Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Consequence	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	t_ref_count	t_alt_count	n_ref_count	n_alt_count	HGVSc	HGVSp	HGVSp_Short	Transcript_ID	RefSeq	Protein_position	Codons	Exon_Number	COMMENTS	PATH_SCORE	AA_MAF	AFR_MAF	ALLELE_NUM	AMR_MAF	ASN_MAF	Allele	Amino_Acid_Change	Amino_acids	BIOTYPE	CANONICAL	CCDS	CDS_position	CLIN_SIG	Comments	DISTANCE	DOMAINS	EAS_MAF	EA_MAF	ENSP	EUR_MAF	EXON	ExAC_AF	ExAC_AF_AFR	ExAC_AF_AMR	ExAC_AF_EAS	ExAC_AF_FIN	ExAC_AF_NFE	ExAC_AF_OTH	ExAC_AF_SAS	Existing_variation	FILTER	Feature	Feature_type	GENE_PHENO	GMAF	Gene	HGNC_ID	HGVS_OFFSET	HIGH_INF_POS	IMPACT	INTRON	IS_NEW	MA:FIS	MA:FImpact	MA:link.MSA	MA:link.PDB	MA:link.var	MA:protein.change	MINIMISED	MOTIF_NAME	MOTIF_POS	MOTIF_SCORE_CHANGE	PHENO	PICK	PUBMED	PolyPhen	SAS_MAF	SIFT	SOMATIC	SWISSPROT	SYMBOL	SYMBOL_SOURCE	TREMBL	TSL	Transcript	UNIPARC	VARIANT_CLASS	all_effects	amino_acid_change	cDNA_Change	cDNA_position	cdna_change	comments	n_depth	t_depth	transcript
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0081657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	288	281	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513271	149513271	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	85	333	0	ENST00000261799.4:c.812A>G	p.His271Arg	p.H271R	ENST00000261799	NM_002609.3	271	cAc/cGc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041565	47041598	+	frameshift_variant	Frame_Shift_Del	DEL	ACTACAATGCTCAGAGCCAGCAGTACCTGTACTG	ACTACAATGCTCAGAGCCAGCAGTACCTGTACTG	-			P-0081657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	150	404	0	ENST00000329236.7:c.1556_1589del	p.Tyr519TrpfsTer96	p.Y519Wfs*96	ENST00000329236	NM_001204466.1	519	tACTACAATGCTCAGAGCCAGCAGTACCTGTACTGg/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0083825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	111	789	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0083825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	125	797	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38798760	38798760	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs968715592		P-0083825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	18	493	0	ENST00000348513.6:c.103G>A	p.Ala35Thr	p.A35T	ENST00000348513	NM_003079.4	35	Gcc/Acc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060999	38061017	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCGGGCCCGGGGGCC	GGCGGCGGGCCCGGGGGCC	-			P-0083825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	219	783	0	ENST00000250448.2:c.972_990del	p.Gly327ArgfsTer17	p.G327Rfs*17	ENST00000250448	NM_004496.3	324	ccGGCCCCCGGGCCCGCCGCC/cc																																																																															
CDH1	999	MSKCC	GRCh37	16	68845732	68845749	+	inframe_deletion	In_Frame_Del	DEL	CAGTGTGGTCACCACTGG	CAGTGTGGTCACCACTGG	-			P-0083825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	14	634	0	ENST00000261769.5:c.978_995del	p.Ile326_Gly332delinsMet	p.I326_G332delinsM	ENST00000261769	NM_004360.3	326	atCAGTGTGGTCACCACTGGg/atg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376137	225376137	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0085255-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			272	19	412	0	ENST00000264414.4:c.817A>C	p.Met273Leu	p.M273L	ENST00000264414	NM_003590.4	273	Atg/Ctg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47139455	47139462	+	frameshift_variant	Frame_Shift_Del	DEL	TTACGAGA	TTACGAGA	-			P-0085255-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			366	31	396	0	ENST00000409792.3:c.5125_5132del	p.Ser1709GlufsTer16	p.S1709Efs*16	ENST00000409792	NM_014159.6	1709	TCTCGTAAg/g																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589340	28589340	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085255-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	23	332	0	ENST00000241453.7:c.2707C>G	p.Gln903Glu	p.Q903E	ENST00000241453	NM_004119.2	903	Caa/Gaa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453125	140453137	+	protein_altering_variant	In_Frame_Del	DEL	ATCGAGATTTCAC	ATCGAGATTTCAC	G			P-0085255-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			324	36	370	0	ENST00000288602.6:c.1798_1810delinsC	p.Val600_Trp604delinsArg	p.V600_W604delinsR	ENST00000288602	NM_004333.4	600	GTGAAATCTCGATgg/Cgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521219	187521219	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs781096830		P-0000106-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			677	82	715	0	ENST00000441802.2:c.11936C>G	p.Ser3979Cys	p.S3979C	ENST00000441802	NM_005245.3	3979	tCc/tGc																																																																															
POLE	5426	MSKCC	GRCh37	12	133212482	133212482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000106-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	61	410	0	ENST00000320574.5:c.5807G>A	p.Gly1936Glu	p.G1936E	ENST00000320574	NM_006231.2	1936	gGa/gAa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17129492	17129492	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000106-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			312	24	379	0	ENST00000285071.4:c.394G>A	p.Glu132Lys	p.E132K	ENST00000285071	NM_144997.5	132	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1060501197		P-0000106-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			169	97	350	0	ENST00000269305.4:c.716del	p.Asn239ThrfsTer8	p.N239Tfs*8	ENST00000269305	NM_001126112.2	239	aAc/ac																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211836	2211836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	174	377	0	ENST00000398665.3:c.1552G>A	p.Glu518Lys	p.E518K	ENST00000398665	NM_032482.2	518	Gag/Aag																																																																															
RAB35	11021	MSKCC	GRCh37	12	120541630	120541630	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0088122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	167	477	0	ENST00000229340.5:c.227C>T	p.Thr76Met	p.T76M	ENST00000229340	NM_006861.6	76	aCg/aTg																																																																															
BBC3	27113	MSKCC	GRCh37	19	47725026	47725052	+	inframe_deletion	In_Frame_Del	DEL	AGTCCCTGACGTCCACCGGGCGGGTGC	AGTCCCTGACGTCCACCGGGCGGGTGC	-			P-0088122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	200	441	0	ENST00000449228.1:c.692_718del	p.Cys231_Asp239del	p.C231_D239del	ENST00000449228	NM_001127240.2	231	tGCACCCGCCCGGTGGACGTCAGGGACTcg/tcg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288165	33288169	+	frameshift_variant	Frame_Shift_Del	DEL	AATCC	AATCC	-			P-0088122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	221	439	0	ENST00000374542.5:c.1239_1243del	p.Leu413PhefsTer3	p.L413Ffs*3	ENST00000374542	NM_001141970.1	413	ttGGATTct/ttct																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71947000	71947000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	134	427	0	ENST00000298229.2:c.2849C>A	p.Ala950Glu	p.A950E	ENST00000298229	NM_001567.3	950	gCa/gAa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212292491	212293152	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTTTTTGAAAGTTGCTTAAAATTAACACCATGAAATTCTATGAAATTGTCCCTAAACTAAAATTGGCTGATTTTTTTTTTTTCTGTCAAAATGATCAGGCAAGTTCCTACAAAACCACAGCTTATGGAAAACATCTTAGCAGAAATATTAGTATATTACATTGTAATAAACCAGGAAAAAAAAAAAAACAGAAAAAGGCAGATAGCAATGCTATTTAGAATATTTTGTTGCTCTTCAATGGGAACACATGGACACAGGGAGGAGAACATCACACATCGGGGCCTGTCGGTGGATGGAGGGCAAGGGGAGGGAGAGCATTAGGACAAATACCTAATGCATGCAGGGCTTAAAACCTAGATGACGGGTTGATAGGTACAGCAAACCACCATGCCACATGTATACCTACGCAACAAACCTGCAGGTTCTGCATGTGTATCGCAGAACTTAAAATAAAATAAAATAAAATAAAATAAAATATTTTTTTTTCATTGAGAAAGCAAAGAGTTAACTGCTTTAGGAAATTAGGCTTATCAATAGGTATTTATAACACAACAAAATAATTTAGCTTAAGATATTTCACATGAACTTAACATATGTATTTTTGCTTTACAAGCTTTAATTCGCAAAGAAGATTTATTTACCATAGCTCCAAACGTCACTC	TGTTTTTGAAAGTTGCTTAAAATTAACACCATGAAATTCTATGAAATTGTCCCTAAACTAAAATTGGCTGATTTTTTTTTTTTCTGTCAAAATGATCAGGCAAGTTCCTACAAAACCACAGCTTATGGAAAACATCTTAGCAGAAATATTAGTATATTACATTGTAATAAACCAGGAAAAAAAAAAAAACAGAAAAAGGCAGATAGCAATGCTATTTAGAATATTTTGTTGCTCTTCAATGGGAACACATGGACACAGGGAGGAGAACATCACACATCGGGGCCTGTCGGTGGATGGAGGGCAAGGGGAGGGAGAGCATTAGGACAAATACCTAATGCATGCAGGGCTTAAAACCTAGATGACGGGTTGATAGGTACAGCAAACCACCATGCCACATGTATACCTACGCAACAAACCTGCAGGTTCTGCATGTGTATCGCAGAACTTAAAATAAAATAAAATAAAATAAAATAAAATATTTTTTTTTCATTGAGAAAGCAAAGAGTTAACTGCTTTAGGAAATTAGGCTTATCAATAGGTATTTATAACACAACAAAATAATTTAGCTTAAGATATTTCACATGAACTTAACATATGTATTTTTGCTTTACAAGCTTTAATTCGCAAAGAAGATTTATTTACCATAGCTCCAAACGTCACTC	-			P-0088122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			2	77	0	0	ENST00000342788.4:c.2700_2719+642del		p.X900_splice	ENST00000342788	NM_005235.2	900																																																																																
AGO2	27161	MSKCC	GRCh37	8	141595282	141595282	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0088122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	144	374	0	ENST00000220592.5:c.151A>C	p.Lys51Gln	p.K51Q	ENST00000220592	NM_012154.3	51	Aaa/Caa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6038842	6038842	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0088122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	165	413	0	ENST00000265849.7:c.602G>C	p.Ser201Thr	p.S201T	ENST00000265849	NM_000535.5	201	aGt/aCt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921937	39922371	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAAGCAGGCAGGCGGGGATGTGTTCGCACAGGCCCCAGAGGGAAGCCGGGGTCAAGAGGTACCTTGCCATCGGCATTCTCCACGTAGTATTCCCCTGTCAGTGGCAATCCCCGCCTGGACTCCTGAGGGATCAAGTGTTTGGTTTTGCACAGTCTCTTCCCGGATGGCTTCTCGCTGTTGTCGGTGTATTTCTGCAGCAGGGAGGCAGCCTGGCAATCCTCTTCTTCGTCTGCACACAGCACATCTGTCTTCTGGTTTTCTTTAATTTTCTGCTGTTTGGCAGGCGGCCTGGAGGCTGGTGCGCAGCTTGGCTGAGCCTGCTTTTTGCCGCCTGCACTGGTGGATGAAAGACTCTTCATGGGCGGAGAGCCGGAGAACACAGGCAAGCCTAAATACGGAGGGGGTGACGGGGTGGCGGGCGGATGGGAGACGGGA	GAAGCAGGCAGGCGGGGATGTGTTCGCACAGGCCCCAGAGGGAAGCCGGGGTCAAGAGGTACCTTGCCATCGGCATTCTCCACGTAGTATTCCCCTGTCAGTGGCAATCCCCGCCTGGACTCCTGAGGGATCAAGTGTTTGGTTTTGCACAGTCTCTTCCCGGATGGCTTCTCGCTGTTGTCGGTGTATTTCTGCAGCAGGGAGGCAGCCTGGCAATCCTCTTCTTCGTCTGCACACAGCACATCTGTCTTCTGGTTTTCTTTAATTTTCTGCTGTTTGGCAGGCGGCCTGGAGGCTGGTGCGCAGCTTGGCTGAGCCTGCTTTTTGCCGCCTGCACTGGTGGATGAAAGACTCTTCATGGGCGGAGAGCCGGAGAACACAGGCAAGCCTAAATACGGAGGGGGTGACGGGGTGGCGGGCGGATGGGAGACGGGA	-			P-0088122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	25	286	0	ENST00000378444.4:c.3848-47_4173+62del		p.X1283_splice	ENST00000378444	NM_001123385.1	1283																																																																																
NSD1	64324	MSKCC	GRCh37	5	176562564	176562564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	53	443	0	ENST00000439151.2:c.460G>A	p.Glu154Lys	p.E154K	ENST00000439151	NM_022455.4	154	Gag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860578	151860578	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0088122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	216	493	0	ENST00000262189.6:c.10084del	p.Thr3362LeufsTer22	p.T3362Lfs*22	ENST00000262189	NM_170606.2	3362	Act/ct																																																																															
NF1	4763	MSKCC	GRCh37	17	29554625	29554626	+	splice_donor_variant	Splice_Site	INS	-	-	A			P-0013978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	56	353	2	ENST00000358273.4:c.2409+1_2409+2insA		p.X803_splice	ENST00000358273	NM_001042492.2	803																																																																																
STK11	6794	MSKCC	GRCh37	19	1221302	1221302	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	93	470	1	ENST00000326873.7:c.827del	p.Gly276AlafsTer11	p.G276Afs*11	ENST00000326873	NM_000455.4	275	ccG/cc																																																																															
ALK	238	MSKCC	GRCh37	2	29754979	29754979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	26	187	0	ENST00000389048.3:c.956C>T	p.Ser319Phe	p.S319F	ENST00000389048	NM_004304.4	319	tCc/tTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524156	187524156	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	60	352	1	ENST00000441802.2:c.11383G>T	p.Glu3795Ter	p.E3795*	ENST00000441802	NM_005245.3	3795	Gaa/Taa																																																																															
CDH1	999	MSKCC	GRCh37	16	68842603	68842603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	63	679	0	ENST00000261769.5:c.539C>T	p.Ser180Phe	p.S180F	ENST00000261769	NM_004360.3	180	tCc/tTc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288725	33288725	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	39	455	0	ENST00000374542.5:c.827A>G	p.Asn276Ser	p.N276S	ENST00000374542	NM_001141970.1	276	aAc/aGc																																																																															
HRAS	3265	MSKCC	GRCh37	11	534289	534289	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs104894229		P-0014370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	204	561	1	ENST00000311189.7:c.34G>T	p.Gly12Cys	p.G12C	ENST00000311189		12	Ggc/Tgc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061121	38061137	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCCTTGGCGCCGCTG	CGCCCTTGGCGCCGCTG	-			P-0014370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	22	127	0	ENST00000250448.2:c.852_868del	p.Ser285ProfsTer2	p.S285Pfs*2	ENST00000250448	NM_004496.3	284	ggCAGCGGCGCCAAGGGCGgc/gggc																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73774932	73774932	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	49	490	0	ENST00000254810.4:c.241A>G	p.Thr81Ala	p.T81A	ENST00000254810	NM_005324.3	81	Acc/Gcc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022400	31022400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	17	165	0	ENST00000375687.4:c.1885G>T	p.Gly629Cys	p.G629C	ENST00000375687	NM_015338.5	629	Ggt/Tgt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541903	187541905	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs1455163228		P-0014370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	43	465	0	ENST00000441802.2:c.5835_5837del	p.Arg1945del	p.R1945del	ENST00000441802	NM_005245.3	1945	agAAGc/agc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227797	53227798	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0014370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	59	621	0	ENST00000375401.3:c.2390_2391del	p.Leu797ArgfsTer3	p.L797Rfs*3	ENST00000375401	NM_004187.3	797	cTA/c																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	168	636	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108153550	108153554	+	frameshift_variant	Frame_Shift_Del	DEL	CTTAT	CTTAT	-			P-0014481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	86	356	0	ENST00000278616.4:c.3693_3697del	p.Leu1231PhefsTer13	p.L1231Ffs*13	ENST00000278616	NM_000051.3	1230	aaCTTATct/aact																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	69	441	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0014509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	169	533	1	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914871	32914871	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	51	456	0	ENST00000380152.3:c.6379A>T	p.Ser2127Cys	p.S2127C	ENST00000380152		2127	Agt/Tgt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346721	89346721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	27	397	0	ENST00000301030.4:c.6229C>A	p.Leu2077Met	p.L2077M	ENST00000301030	NM_001256183.1	2077	Ctg/Atg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798066	32798066	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	90	646	0	ENST00000374899.4:c.1613A>C	p.Glu538Ala	p.E538A	ENST00000374899	NM_018833.2	538	gAa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0014810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	79	516	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	84	358	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37666011	37666011	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	87	312	0	ENST00000447079.4:c.2663A>G	p.Glu888Gly	p.E888G	ENST00000447079	NM_015083.1	888	gAg/gGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0014833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	130	858	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0014833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	751	696	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	65	1048	1	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28929495		P-0014833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	702	578	1	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431322	49431322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	33	307	0	ENST00000301067.7:c.9817G>A	p.Ala3273Thr	p.A3273T	ENST00000301067	NM_003482.3	3273	Gcc/Acc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136841	2136841	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	251	703	0	ENST00000219476.3:c.4958C>A	p.Ser1653Tyr	p.S1653Y	ENST00000219476	NM_000548.3	1653	tCc/tAc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44945112	44945112	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0014833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	11	313	1	ENST00000377967.4:c.3436C>T	p.His1146Tyr	p.H1146Y	ENST00000377967	NM_021140.2	1146	Cat/Tat																																																																															
MED12	9968	MSKCC	GRCh37	X	70354291	70354291	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	90	923	0	ENST00000374080.3:c.4702G>T	p.Gly1568Cys	p.G1568C	ENST00000374080		1568	Ggc/Tgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0014867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	28	271	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0014867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	221	720	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883551	37883551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	76	683	0	ENST00000269571.5:c.3163G>T	p.Gly1055Cys	p.G1055C	ENST00000269571		1055	Ggc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	159	500	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0014940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	179	442	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
NF1	4763	MSKCC	GRCh37	17	29576135	29576135	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs868573462		P-0014940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	24	499	0	ENST00000358273.4:c.4108C>T	p.Gln1370Ter	p.Q1370*	ENST00000358273	NM_001042492.2	1370	Cag/Tag																																																																															
CDH1	999	MSKCC	GRCh37	16	68853329	68853330	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0014940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	274	575	0	ENST00000261769.5:c.1711+2dup		p.X571_splice	ENST00000261769	NM_004360.3	571																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56160661	56160681	+	inframe_deletion	In_Frame_Del	DEL	TGCGGGCCAGACTGTACTTAC	TGCGGGCCAGACTGTACTTAC	-			P-0014955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	147	556	0	ENST00000399503.3:c.938_958del	p.Arg313_Leu319del	p.R313_L319del	ENST00000399503	NM_005921.1	312	aTGCGGGCCAGACTGTACTTACtg/atg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183249	56183249	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	182	565	0	ENST00000399503.3:c.4159G>C	p.Ala1387Pro	p.A1387P	ENST00000399503	NM_005921.1	1387	Gca/Cca																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	104	541	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115904	8115904	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	124	532	0	ENST00000346208.3:c.1251del	p.Thr418ArgfsTer57	p.T418Rfs*57	ENST00000346208		417	aCc/ac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906448	32906448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	134	411	0	ENST00000380152.3:c.833G>A	p.Ser278Asn	p.S278N	ENST00000380152		278	aGc/aAc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78897415	78897415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	299	633	0	ENST00000306801.3:c.2750C>T	p.Thr917Ile	p.T917I	ENST00000306801	NM_020761.2	917	aCc/aTc																																																																															
KIT	3815	MSKCC	GRCh37	4	55604598	55604598	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	138	562	0	ENST00000288135.5:c.2806T>G	p.Tyr936Asp	p.Y936D	ENST00000288135	NM_000222.2	936	Tac/Gac																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981949	70981949	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	85	904	2	ENST00000276594.2:c.147C>A	p.Asp49Glu	p.D49E	ENST00000276594	NM_024504.3	49	gaC/gaA																																																																															
HGF	3082	MSKCC	GRCh37	7	81386579	81386579	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	173	318	1	ENST00000222390.5:c.408C>A	p.Tyr136Ter	p.Y136*	ENST00000222390	NM_000601.4	136	taC/taA																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939371	36939371	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	174	379	0	ENST00000361632.4:c.479G>C	p.Ser160Thr	p.S160T	ENST00000361632		160	aGt/aCt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416731	121416743	+	frameshift_variant	Frame_Shift_Del	DEL	CGAGGGGAGCTGG	CGAGGGGAGCTGG	-			P-0015674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	330	603	0	ENST00000257555.6:c.161_173del	p.Arg54LeufsTer97	p.R54Lfs*97	ENST00000257555		54	CGAGGGGAGCTGGct/ct																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650909	37650909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1639	239	443	1	ENST00000447079.4:c.2381C>A	p.Thr794Lys	p.T794K	ENST00000447079	NM_015083.1	794	aCa/aAa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41256250	41256251	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs80357604		P-0015674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	124	250	0	ENST00000357654.3:c.329dup	p.Glu111GlyfsTer3	p.E111Gfs*3	ENST00000357654	NM_007294.3	110	aag/aaAg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41256279	41256279	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G	rs80358116		P-0015674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	471	144	0	ENST00000357654.3:c.302-1G>C		p.X101_splice	ENST00000357654	NM_007294.3	101																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41514515	41514515	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	657	397	0	ENST00000373198.4:c.146C>A	p.Thr49Asn	p.T49N	ENST00000373198	NM_133170.3	49	aCc/aAc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72890340	72890340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	156	267	0	ENST00000325599.8:c.342G>T	p.Glu114Asp	p.E114D	ENST00000325599	NM_018130.2	114	gaG/gaT																																																																															
TET2	54790	MSKCC	GRCh37	4	106156333	106156333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778934527		P-0015674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	77	238	0	ENST00000380013.4:c.1234C>T	p.Leu412Phe	p.L412F	ENST00000380013	NM_001127208.2	412	Ctt/Ttt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5072580	5072591	+	inframe_deletion	In_Frame_Del	DEL	AAGTTCTTTTAA	AAGTTCTTTTAA	-			P-0015674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	153	264	0	ENST00000381652.3:c.1737_1748del	p.Leu580_Leu583del	p.L580_L583del	ENST00000381652	NM_004972.3	577	gAAGTTCTTTTAAaa/gaa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209315	98209315	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	204	456	0	ENST00000331920.6:c.4223T>G	p.Leu1408Arg	p.L1408R	ENST00000331920	NM_000264.3	1408	cTg/cGg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0016190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	314	529	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0016190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	503	765	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396516	30396516	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs537554301		P-0016190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	336	621	1	ENST00000331968.5:c.203C>T	p.Ser68Leu	p.S68L	ENST00000331968	NM_002742.2	68	tCg/tTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949099	151949100	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0016190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	379	654	0	ENST00000262189.6:c.1545_1546del	p.Met515IlefsTer3	p.M515Ifs*3	ENST00000262189	NM_170606.2	515	atGTat/atat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0016917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	358	634	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0016917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	175	342	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47158118	47158118	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	304	662	0	ENST00000409792.3:c.4581T>G	p.Ile1527Met	p.I1527M	ENST00000409792	NM_014159.6	1527	atT/atG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	137	581	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032474	12032474	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	81	356	0	ENST00000353533.5:c.910C>T	p.Arg304Ter	p.R304*	ENST00000353533	NM_003010.3	304	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692794	89692794	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121909238		P-0017045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	86	436	0	ENST00000371953.3:c.278A>G	p.His93Arg	p.H93R	ENST00000371953	NM_000314.4	93	cAt/cGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38064140	38064140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	160	537	0	ENST00000250448.2:c.38G>A	p.Ser13Asn	p.S13N	ENST00000250448	NM_004496.3	13	aGc/aAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187530336	187530336	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0017045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	64	285	0	ENST00000441802.2:c.10206+1G>C		p.X3402_splice	ENST00000441802	NM_005245.3	3402																																																																																
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	139	518	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008017	29008017	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	42	295	0	ENST00000282397.4:c.752A>T	p.Asn251Ile	p.N251I	ENST00000282397	NM_002019.4	251	aAt/aTt																																																																															
MGA	23269	MSKCC	GRCh37	15	42041687	42041706	+	frameshift_variant	Frame_Shift_Del	DEL	AGCATGTTGCTTCCCTTCAG	AGCATGTTGCTTCCCTTCAG	-			P-0017421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	39	428	0	ENST00000219905.7:c.5883_5902del	p.Gln1961HisfsTer13	p.Q1961Hfs*13	ENST00000219905	NM_001164273.1	1961	cAGCATGTTGCTTCCCTTCAG/c																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923386	9923386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	124	503	0	ENST00000330684.3:c.1901G>T	p.Trp634Leu	p.W634L	ENST00000330684	NM_001134407.1	634	tGg/tTg																																																																															
CBFB	865	MSKCC	GRCh37	16	67063353	67063353	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	142	328	0	ENST00000412916.2:c.43G>C	p.Glu15Gln	p.E15Q	ENST00000412916		15	Gag/Cag																																																																															
ALK	238	MSKCC	GRCh37	2	29456514	29456514	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1213	143	571	0	ENST00000389048.3:c.2404G>C	p.Glu802Gln	p.E802Q	ENST00000389048	NM_004304.4	802	Gaa/Caa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391745	139391753	+	inframe_deletion	In_Frame_Del	DEL	AGGCTGCCC	AGGCTGCCC	-			P-0017421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	66	447	0	ENST00000277541.6:c.6438_6446del	p.Gly2147_Leu2149del	p.G2147_L2149del	ENST00000277541	NM_017617.3	2146	ctGGGCAGCCTc/ctc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727451	66727451	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519729		P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	256	522	0	ENST00000307102.5:c.167A>C	p.Gln56Pro	p.Q56P	ENST00000307102	NM_002755.3	56	cAg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587782082		P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	287	749	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602617	10602617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	271	639	0	ENST00000171111.5:c.961G>C	p.Ala321Pro	p.A321P	ENST00000171111	NM_203500.1	321	Gcg/Ccg																																																																															
MAX	4149	MSKCC	GRCh37	14	65543210	65543210	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876659544		P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	31	319	0	ENST00000358664.4:c.467G>A	p.Arg156Gln	p.R156Q	ENST00000358664	NM_002382.4	156	cGg/cAg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876461	35876461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1426	237	872	0	ENST00000303115.3:c.1253C>T	p.Pro418Leu	p.P418L	ENST00000303115	NM_002185.3	418	cCa/cTa																																																																															
JUN	3725	MSKCC	GRCh37	1	59248409	59248409	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1184098204		P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	28	408	2	ENST00000371222.2:c.334G>A	p.Glu112Lys	p.E112K	ENST00000371222	NM_002228.3	112	Gag/Aag																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056591	26056591	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	84	283	0	ENST00000343677.2:c.66G>C	p.Lys22Asn	p.K22N	ENST00000343677	NM_005319.3	22	aaG/aaC																																																																															
PGR	5241	MSKCC	GRCh37	11	100999201	100999201	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	54	769	0	ENST00000325455.5:c.601G>C	p.Glu201Gln	p.E201Q	ENST00000325455	NM_001202474.3	201	Gag/Cag																																																																															
FLT3	2322	MSKCC	GRCh37	13	28609780	28609780	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	290	742	1	ENST00000241453.7:c.1449G>T	p.Trp483Cys	p.W483C	ENST00000241453	NM_004119.2	483	tgG/tgT																																																																															
BLM	641	MSKCC	GRCh37	15	91303747	91304239	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAACTACAGATTTGCTTTTGTGGCCTACCAGAGTAAACTACTTATATTTAATACGTTGTTCTCTTTTCTCTCTTCAGAAGGAAACTTCTAACGGAAGTAGATTTTAATAAAAGTGATGCCAGTCTTCTTGGCTCATTGTGGAGATACAGGCCTGATTCACTTGATGGCCCTATGGAGGGTGATTCCTGCCCTACAGGGAATTCTATGAAGGAGTTAAATTTTTCACACCTTCCCTCAAATTCTGTTTCTCCTGGGGACTGTTTACTGACTACCACCCTAGGAAAGACAGGATTCTCTGCCACCAGGAAGAATCTTTTTGAAAGGCCTTTATTCAATACCCATTTACAGAAGTCCTTTGTAAGTAGCAACTGGGCTGAAACACCAAGACTAGGAAAAAAAAATGAAAGCTCTTATTTCCCAGGAAATGTTCTCACAAGCACTGCTGTGAAAGATCAGAATAAACATACTGCTTCAATAAATGACTTAGAAAGAG	AAACTACAGATTTGCTTTTGTGGCCTACCAGAGTAAACTACTTATATTTAATACGTTGTTCTCTTTTCTCTCTTCAGAAGGAAACTTCTAACGGAAGTAGATTTTAATAAAAGTGATGCCAGTCTTCTTGGCTCATTGTGGAGATACAGGCCTGATTCACTTGATGGCCCTATGGAGGGTGATTCCTGCCCTACAGGGAATTCTATGAAGGAGTTAAATTTTTCACACCTTCCCTCAAATTCTGTTTCTCCTGGGGACTGTTTACTGACTACCACCCTAGGAAAGACAGGATTCTCTGCCACCAGGAAGAATCTTTTTGAAAGGCCTTTATTCAATACCCATTTACAGAAGTCCTTTGTAAGTAGCAACTGGGCTGAAACACCAAGACTAGGAAAAAAAAATGAAAGCTCTTATTTCCCAGGAAATGTTCTCACAAGCACTGCTGTGAAAGATCAGAATAAACATACTGCTTCAATAAATGACTTAGAAAGAG	-			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	72	121	0	ENST00000355112.3:c.1221-73_1640del		p.X407_splice	ENST00000355112	NM_000057.2	407																																																																																
ANKRD11	29123	MSKCC	GRCh37	16	89351727	89351727	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	170	885	0	ENST00000301030.4:c.1223C>G	p.Ser408Ter	p.S408*	ENST00000301030	NM_001256183.1	408	tCa/tGa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223769	36223769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1618	86	884	0	ENST00000222270.7:c.6319G>A	p.Glu2107Lys	p.E2107K	ENST00000222270	NM_014727.1	2107	Gag/Aag																																																																															
CIC	23152	MSKCC	GRCh37	19	42794670	42794670	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	82	707	0	ENST00000575354.2:c.1750C>A	p.Pro584Thr	p.P584T	ENST00000575354	NM_015125.3	584	Cct/Act																																																																															
ALK	238	MSKCC	GRCh37	2	29606700	29606700	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775514690		P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	203	735	1	ENST00000389048.3:c.1180G>A	p.Gly394Arg	p.G394R	ENST00000389048	NM_004304.4	394	Ggg/Agg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61710172	61710172	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	180	722	0	ENST00000401558.2:c.2732C>G	p.Ala911Gly	p.A911G	ENST00000401558	NM_003400.3	911	gCt/gGt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095541	178095541	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	68	554	0	ENST00000397062.3:c.1790G>C	p.Ser597Thr	p.S597T	ENST00000397062	NM_006164.4	597	aGt/aCt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212483931	212483931	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs182073178		P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	87	883	1	ENST00000342788.4:c.2272G>T	p.Gly758Cys	p.G758C	ENST00000342788	NM_005235.2	758	Ggt/Tgt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47158117	47158117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	63	828	0	ENST00000409792.3:c.4582G>A	p.Glu1528Lys	p.E1528K	ENST00000409792	NM_014159.6	1528	Gaa/Aaa																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045777	26045777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	152	402	2	ENST00000540144.1:c.139G>A	p.Val47Met	p.V47M	ENST00000540144	NM_003531.2	47	Gtg/Atg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056570	26056571	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAG			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	104	323	0	ENST00000343677.2:c.83_86dup	p.Gly30TrpfsTer6	p.G30Wfs*6	ENST00000343677	NM_005319.3	29	ggg/ggCTGGg																																																																															
NBN	4683	MSKCC	GRCh37	8	90967617	90967617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	51	554	0	ENST00000265433.3:c.1291C>T	p.Leu431Phe	p.L431F	ENST00000265433	NM_002485.4	431	Ctt/Ttt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8492907	8492907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	222	691	1	ENST00000356435.5:c.2422G>A	p.Asp808Asn	p.D808N	ENST00000356435		808	Gat/Aat																																																																															
ARAF	369	MSKCC	GRCh37	X	47428194	47428194	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	113	813	0	ENST00000377045.4:c.1154del	p.Cys385LeufsTer59	p.C385Lfs*59	ENST00000377045	NM_001654.4	385	tGt/tt																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47599322	47599322	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs75352463		P-0028369-T11-IM7									Unknown	SOMATIC				MSK-IMPACT			533	131	1183	1	ENST00000395288.2:c.230A>G	p.Asn77Ser	p.N77S	ENST00000395288	NM_016506.5	77	aAc/aGc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0028369-T11-IM7									Unknown	SOMATIC				MSK-IMPACT			331	60	770	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230561499	230561519	+	upstream_gene_variant	5'Flank	DEL	GAGGCGGCCGAGGAGGAGCGC	GAGGCGGCCGAGGAGGAGCGC	-	rs1324708577		P-0028369-T11-IM7									Unknown	SOMATIC				MSK-IMPACT			504	75	2399	0				ENST00000391860	NM_001258311.1																																																																																	
IRS2	8660	MSKCC	GRCh37	13	110436632	110436632	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1026044237		P-0028369-T11-IM7									Unknown	SOMATIC				MSK-IMPACT			522	135	1672	7	ENST00000375856.3:c.1769C>T	p.Pro590Leu	p.P590L	ENST00000375856	NM_003749.2	590	cCc/cTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006873	47006890	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	ATCAGGACATGGAGTATG	ATCAGGACATGGAGTATG	-			P-0028369-T11-IM7									Unknown	SOMATIC				MSK-IMPACT			255	61	551	0	ENST00000329236.7:c.-7_11del		p.*3*	ENST00000329236	NM_001204466.1																																																																																	
IRS2	8660	MSKCC	GRCh37	13	110435219	110435219	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746894027		P-0041434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	10	517	0	ENST00000375856.3:c.3182C>T	p.Ser1061Leu	p.S1061L	ENST00000375856	NM_003749.2	1061	tCg/tTg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40462607	40462607	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1387284839		P-0041434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	10	692	0	ENST00000345506.4:c.2305C>T	p.Arg769Cys	p.R769C	ENST00000345506	NM_003152.3	769	Cgc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221785	55221786	+	missense_variant	Missense_Mutation	DNP	AT	AT	GA			P-0057213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	142	624	1	ENST00000275493.2:c.829_830delinsGA	p.Met277Glu	p.M277E	ENST00000275493	NM_005228.3	277	ATg/GAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151875096	151875097	+	splice_acceptor_variant	Splice_Site	INS	-	-	TT	rs753425356		P-0057213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	16	65	0	ENST00000262189.6:c.7443-3_7443-2dup		p.X2481_splice	ENST00000262189	NM_170606.2	2481																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151884448	151884448	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773744238		P-0057213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	162	295	0	ENST00000262189.6:c.4907C>T	p.Thr1636Met	p.T1636M	ENST00000262189	NM_170606.2	1636	aCg/aTg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249413	110249413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	83	957	0	ENST00000374672.4:c.1160C>T	p.Ser387Leu	p.S387L	ENST00000374672	NM_004235.4	387	tCg/tTg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225314	2225314	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	61	612	1	ENST00000326181.6:c.1399C>T	p.Gln467Ter	p.Q467*	ENST00000326181	NM_032271.2	467	Cag/Tag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627381	37627381	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	229	516	0	ENST00000447079.4:c.1296C>G	p.Asn432Lys	p.N432K	ENST00000447079	NM_015083.1	432	aaC/aaG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49418723	49418723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587783697		P-0061859-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			57	10	637	0	ENST00000301067.7:c.15791G>A	p.Trp5264Ter	p.W5264*	ENST00000301067	NM_003482.3	5264	tGg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0063348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			549	103	1353	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624970	9624970	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			423	50	719	0	ENST00000353224.5:c.7G>T	p.Gly3Trp	p.G3W	ENST00000353224	NM_177990.2	3	Ggg/Tgg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134255	41134255	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs994659376		P-0063348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			695	87	675	0	ENST00000379561.5:c.1373C>T	p.Ala458Val	p.A458V	ENST00000379561	NM_002015.3	458	gCg/gTg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117631323	117631323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	51	722	1	ENST00000368508.3:c.6355G>A	p.Gly2119Arg	p.G2119R	ENST00000368508	NM_002944.2	2119	Ggg/Agg																																																																															
POLE	5426	MSKCC	GRCh37	12	133220544	133220544	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs200776293		P-0063348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			457	135	852	0	ENST00000320574.5:c.4169G>T	p.Arg1390Leu	p.R1390L	ENST00000320574	NM_006231.2	1390	cGc/cTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133248877	133248877	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1054837169		P-0063348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	159	1022	2	ENST00000320574.5:c.1718G>A	p.Arg573Gln	p.R573Q	ENST00000320574	NM_006231.2	573	cGg/cAg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435006	110435006	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1078	258	1712	0	ENST00000375856.3:c.3395G>T	p.Gly1132Val	p.G1132V	ENST00000375856	NM_003749.2	1132	gGc/gTc																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023218	33023218	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			550	91	1100	0	ENST00000300177.4:c.327C>A	p.Asn109Lys	p.N109K	ENST00000300177	NM_001191322.1	109	aaC/aaA																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953124	81953125	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0063348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			506	112	996	1	ENST00000359376.3:c.2090_2091delinsTT	p.Arg697Leu	p.R697L	ENST00000359376	NM_002661.3	697	cGG/cTT																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533034	63533034	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			540	161	1054	0	ENST00000307078.5:c.1860G>C	p.Trp620Cys	p.W620C	ENST00000307078	NM_004655.3	620	tgG/tgC																																																																															
ALK	238	MSKCC	GRCh37	2	30143068	30143068	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			583	318	1379	0	ENST00000389048.3:c.458G>T	p.Gly153Val	p.G153V	ENST00000389048	NM_004304.4	153	gGt/gTt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027670	48027670	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	125	586	0	ENST00000234420.5:c.2548T>A	p.Tyr850Asn	p.Y850N	ENST00000234420	NM_000179.2	850	Tac/Aac																																																																															
EP300	2033	MSKCC	GRCh37	22	41513208	41513208	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	102	639	0	ENST00000263253.7:c.112G>T	p.Asp38Tyr	p.D38Y	ENST00000263253	NM_001429.3	38	Gac/Tac																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31508841	31508841	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1182934007		P-0063348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			700	53	756	0	ENST00000344624.3:c.1474A>T	p.Thr492Ser	p.T492S	ENST00000344624		492	Acc/Tcc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106543518	106543518	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	69	629	0	ENST00000369096.4:c.320T>G	p.Ile107Arg	p.I107R	ENST00000369096	NM_001198.3	107	aTa/aGa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877076	151877076	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			526	172	1080	1	ENST00000262189.6:c.7285A>T	p.Asn2429Tyr	p.N2429Y	ENST00000262189	NM_170606.2	2429	Aac/Tac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341778	8341778	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			468	127	772	0	ENST00000356435.5:c.4862C>A	p.Pro1621Gln	p.P1621Q	ENST00000356435		1621	cCa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0070282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	39	197	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025543	1025543	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	91	501	0	ENST00000358495.3:c.832C>T	p.Arg278Ter	p.R278*	ENST00000358495	NM_134424.2	278	Cga/Tga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061313	38061313	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1204900727		P-0070282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	80	525	0	ENST00000250448.2:c.676G>A	p.Asp226Asn	p.D226N	ENST00000250448	NM_004496.3	226	Gac/Aac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023655	27023655	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1486055371		P-0070282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	57	577	0	ENST00000324856.7:c.761C>T	p.Ser254Phe	p.S254F	ENST00000324856	NM_006015.4	254	tCc/tTc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230435	46230435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	87	358	0	ENST00000334344.6:c.769C>T	p.His257Tyr	p.H257Y	ENST00000334344	NM_152641.2	257	Cat/Tat																																																																															
CDH1	999	MSKCC	GRCh37	16	68857528	68857528	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0070282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	64	295	0	ENST00000261769.5:c.2164del	p.Ile722PhefsTer2	p.I722Ffs*2	ENST00000261769	NM_004360.3	721	ctA/ct																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885262	111885262	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781607793		P-0070282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	65	553	0	ENST00000341259.2:c.1150G>A	p.Asp384Asn	p.D384N	ENST00000341259	NM_005475.2	384	Gat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0071172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			17	17	235	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0076529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			63	43	281	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0076796-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			54	107	211	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
VHL	7428	MSKCC	GRCh37	3	10188251	10188251	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs5030813		P-0076796-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	12	382	0	ENST00000256474.2:c.394C>T	p.Gln132Ter	p.Q132*	ENST00000256474	NM_000551.3	132	Caa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108196143	108196143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs564652222		P-0080119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	28	323	0	ENST00000278616.4:c.6679C>T	p.Arg2227Cys	p.R2227C	ENST00000278616	NM_000051.3	2227	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0083956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	95	192	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0083956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			56	301	307	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0083956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			44	209	274	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																																
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0083956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	243	369	0	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
BRCA2	675	MSKCC	GRCh37	13	32913160	32913160	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	280	397	0	ENST00000380152.3:c.4668C>G	p.Ile1556Met	p.I1556M	ENST00000380152		1556	atC/atG																																																																															
NADK	65220	MSKCC	GRCh37	1	1691201	1691201	+	intron_variant	Intron	SNP	C	C	T	rs745456337		P-0083956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			45	233	434	0	ENST00000341426.5:c.263+2190G>A		p.*88*	ENST00000341426	NM_023018.4																																																																																	
ASXL1	171023	MSKCC	GRCh37	20	31023936	31023936	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	318	436	0	ENST00000375687.4:c.3421G>C	p.Asp1141His	p.D1141H	ENST00000375687	NM_015338.5	1141	Gac/Cac																																																																															
NF1	4763	MSKCC	GRCh37	17	29548916	29548916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	132	142	0	ENST00000358273.4:c.1690G>A	p.Asp564Asn	p.D564N	ENST00000358273	NM_001042492.2	564	Gat/Aat																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750817	57750817	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs926369311		P-0083956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	38	329	0	ENST00000274289.3:c.1787G>A	p.Arg596Gln	p.R596Q	ENST00000274289	NM_006622.3	596	cGa/cAa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366357	15366357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	173	414	0	ENST00000263377.2:c.1798G>A	p.Glu600Lys	p.E600K	ENST00000263377	NM_058243.2	600	Gag/Aag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120290	94120290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	97	399	0	ENST00000369303.4:c.761G>T	p.Gly254Val	p.G254V	ENST00000369303	NM_004440.3	254	gGa/gTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916774	178916774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	239	328	0	ENST00000263967.3:c.161G>A	p.Arg54Lys	p.R54K	ENST00000263967	NM_006218.2	54	aGa/aAa																																																																															
PGR	5241	MSKCC	GRCh37	11	100999317	100999317	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs950020817		P-0083956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	244	495	0	ENST00000325455.5:c.485C>T	p.Ser162Phe	p.S162F	ENST00000325455	NM_001202474.3	162	tCc/tTc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5219458	5219458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	184	452	0	ENST00000357368.4:c.3786C>G	p.Phe1262Leu	p.F1262L	ENST00000357368	NM_002850.3	1262	ttC/ttG																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739389	145739389	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775332504		P-0083956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	139	397	0	ENST00000428558.2:c.1981G>A	p.Glu661Lys	p.E661K	ENST00000428558	NM_004260.3	661	Gag/Aag																																																																															
USP8	9101	MSKCC	GRCh37	15	50789393	50789393	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0083956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	202	340	0	ENST00000307179.4:c.3003G>A	p.Trp1001Ter	p.W1001*	ENST00000307179		1001	tgG/tgA																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275794	38275794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	342	386	0	ENST00000425967.3:c.1475C>T	p.Ser492Phe	p.S492F	ENST00000425967	NM_001174067.1	492	tCt/tTt																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127912125	127912125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			81	289	343	1	ENST00000373547.4:c.745G>A	p.Asp249Asn	p.D249N	ENST00000373547	NM_002721.4	249	Gat/Aat																																																																															
USP8	9101	MSKCC	GRCh37	15	50789335	50789335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	242	340	0	ENST00000307179.4:c.2945G>A	p.Arg982Lys	p.R982K	ENST00000307179		982	aGa/aAa																																																																															
REST	5978	MSKCC	GRCh37	4	57797323	57797323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	25	556	0	ENST00000309042.7:c.2299C>T	p.Pro767Ser	p.P767S	ENST00000309042	NM_005612.4	767	Cct/Tct																																																																															
CDH1	999	MSKCC	GRCh37	16	68862106	68862110	+	frameshift_variant	Frame_Shift_Del	DEL	CGGAG	CGGAG	GGA			P-0083956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	201	346	0	ENST00000261769.5:c.2194_2198delinsGGA	p.Arg732GlyfsTer15	p.R732Gfs*15	ENST00000261769	NM_004360.3	732	CGGAGg/GGAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0089672-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	79	189	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0089676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	44	182	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111489	8111490	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0089676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	76	363	0	ENST00000346208.3:c.978_979del	p.Trp328GlufsTer23	p.W328Efs*23	ENST00000346208		325	acCAca/acca																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266606	198266606	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0089676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	59	319	0	ENST00000335508.6:c.2230G>C	p.Ala744Pro	p.A744P	ENST00000335508	NM_012433.2	744	Gct/Cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0089687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	296	572	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0089687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	38	483	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175606	112175606	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0089687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	247	536	0	ENST00000257430.4:c.4316del	p.Pro1439LeufsTer34	p.P1439Lfs*34	ENST00000257430	NM_000038.5	1439	Cct/ct																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98218673	98218673	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368417828		P-0089687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	146	446	0	ENST00000331920.6:c.3191C>T	p.Thr1064Met	p.T1064M	ENST00000331920	NM_000264.3	1064	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0089687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	162	293	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94197336	94197336	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	36	318	0	ENST00000323929.3:c.1168G>T	p.Ala390Ser	p.A390S	ENST00000323929	NM_005591.3	390	Gct/Tct																																																																															
ATRX	546	MSKCC	GRCh37	X	76849295	76849295	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	37	425	0	ENST00000373344.5:c.5981C>A	p.Pro1994Gln	p.P1994Q	ENST00000373344	NM_000489.3	1994	cCa/cAa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152201888	152201888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	31	325	0	ENST00000206249.3:c.742G>A	p.Val248Met	p.V248M	ENST00000206249	NM_000125.3	248	Gtg/Atg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138474635	138474635	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	40	349	0	ENST00000289153.2:c.358G>T	p.Glu120Ter	p.E120*	ENST00000289153	NM_006219.2	120	Gaa/Taa																																																																															
TET2	54790	MSKCC	GRCh37	4	106190833	106190833	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	41	357	0	ENST00000380013.4:c.4111G>T	p.Val1371Phe	p.V1371F	ENST00000380013	NM_001127208.2	1371	Gtc/Ttc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307649	118307649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	75	398	0	ENST00000534358.1:c.422G>A	p.Gly141Asp	p.G141D	ENST00000534358	NM_005933.3	141	gGc/gAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039686	47039687	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGTTTGCC			P-0089687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	131	493	0	ENST00000329236.7:c.906_913dup	p.Lys305SerfsTer105	p.K305Sfs*105	ENST00000329236	NM_001204466.1	302	gag/gAGTTTGCCag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0089690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	120	486	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724610	162724610	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778566598		P-0089690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			802	44	565	0	ENST00000367921.3:c.382C>T	p.Arg128Cys	p.R128C	ENST00000367921	NM_006182.2	128	Cgc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984742	72984742	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1337540676		P-0089690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	118	598	1	ENST00000268489.5:c.2842G>A	p.Ala948Thr	p.A948T	ENST00000268489	NM_006885.3	948	Gcc/Acc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678773	52678773	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0089690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	33	278	0	ENST00000394830.3:c.846G>C	p.Met282Ile	p.M282I	ENST00000394830	NM_018313.4	282	atG/atC																																																																															
RASA1	5921	MSKCC	GRCh37	5	86633873	86633873	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0089690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	74	345	0	ENST00000274376.6:c.982C>T	p.Gln328Ter	p.Q328*	ENST00000274376	NM_002890.2	328	Caa/Taa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28626812	28626812	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0089690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	22	372	0	ENST00000241453.7:c.485-1G>C		p.X162_splice	ENST00000241453	NM_004119.2	162																																																																																
CDH1	999	MSKCC	GRCh37	16	68862169	68862170	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0089690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	99	527	0	ENST00000261769.5:c.2258_2259del	p.Tyr753LeufsTer3	p.Y753Lfs*3	ENST00000261769	NM_004360.3	753	TAt/t																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641725	23641725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	27	467	0	ENST00000261584.4:c.1750G>A	p.Asp584Asn	p.D584N	ENST00000261584	NM_024675.3	584	Gat/Aat																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206658550	206658550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	93	629	0	ENST00000367120.3:c.1523G>A	p.Arg508Lys	p.R508K	ENST00000367120	NM_014002.3	508	aGa/aAa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214592	5214592	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369295620		P-0033480-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			244	8	539	0	ENST00000357368.4:c.4474C>T	p.Arg1492Trp	p.R1492W	ENST00000357368	NM_002850.3	1492	Cgg/Tgg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275708	41275708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs886039332		P-0033480-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			272	8	502	0	ENST00000349496.5:c.1603C>T	p.Arg535Ter	p.R535*	ENST00000349496	NM_001904.3	535	Cga/Tga																																																																															
ALK	238	MSKCC	GRCh37	2	29443613	29443613	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519783		P-0087669-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			395	172	189	0	ENST00000389048.3:c.3604G>A	p.Gly1202Arg	p.G1202R	ENST00000389048	NM_004304.4	1202	Gga/Aga																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800905	120800905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087669-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			352	151	147	0	ENST00000257552.2:c.343G>A	p.Gly115Arg	p.G115R	ENST00000257552	NM_002442.3	115	Ggg/Agg																																																																															
REL	5966	MSKCC	GRCh37	2	61149044	61149044	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0087669-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			449	189	265	1	ENST00000295025.8:c.1234T>C	p.Trp412Arg	p.W412R	ENST00000295025	NM_002908.2	412	Tgg/Cgg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519968		P-0087885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	61	485	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374084	118374084	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0087885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	79	517	0	ENST00000534358.1:c.7477A>T	p.Lys2493Ter	p.K2493*	ENST00000534358	NM_005933.3	2493	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089479-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			61	30	624	1	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128420047	128420047	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0089479-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	11	399	1	ENST00000265960.3:c.381del	p.Lys127AsnfsTer20	p.K127Nfs*20	ENST00000265960	NM_001006617.1	127	aaA/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175163	112175164	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0089479-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			45	10	435	0	ENST00000257430.4:c.3873_3874del	p.Gln1291HisfsTer9	p.Q1291Hfs*9	ENST00000257430	NM_000038.5	1291	cAG/c																																																																															
CALR	811	MSKCC	GRCh37	19	13049985	13049985	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	61	444	0	ENST00000316448.5:c.129G>T	p.Lys43Asn	p.K43N	ENST00000316448	NM_004343.3	43	aaG/aaT																																																																															
POT1	25913	MSKCC	GRCh37	7	124511069	124511069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	16	338	0	ENST00000357628.3:c.151G>T	p.Asp51Tyr	p.D51Y	ENST00000357628	NM_015450.2	51	Gac/Tac																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435054	110435054	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	53	599	0	ENST00000375856.3:c.3347G>T	p.Gly1116Val	p.G1116V	ENST00000375856	NM_003749.2	1116	gGa/gTa																																																																															
ABL1	25	MSKCC	GRCh37	9	133730365	133730365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	44	446	0	ENST00000318560.5:c.431G>T	p.Gly144Val	p.G144V	ENST00000318560	NM_005157.4	144	gGg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0089574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	24	342	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
POT1	25913	MSKCC	GRCh37	7	124475333	124475333	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0089574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	36	336	0	ENST00000357628.3:c.1505G>T	p.Gly502Val	p.G502V	ENST00000357628	NM_015450.2	502	gGa/gTa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143003313	143003313	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0089574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	31	306	0	ENST00000262992.4:c.2513G>C	p.Arg838Pro	p.R838P	ENST00000262992	NM_001101669.1	838	cGt/cCt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374273	118374273	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0089574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	62	617	0	ENST00000534358.1:c.7666A>G	p.Thr2556Ala	p.T2556A	ENST00000534358	NM_005933.3	2556	Aca/Gca																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039887	47039888	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	G			P-0089574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	29	249	0	ENST00000329236.7:c.996_997delinsG	p.Gln333SerfsTer74	p.Q333Sfs*74	ENST00000329236	NM_001204466.1	332	gcCCag/gcGag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468324	120468324	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587610159		P-0089578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	63	511	0	ENST00000256646.2:c.4115G>A	p.Arg1372Gln	p.R1372Q	ENST00000256646	NM_024408.3	1372	cGg/cAg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26911760	26911760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	121	266	0	ENST00000381527.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000381527	NM_001260.1	62	tCg/tTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934126	39934127	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0089578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			58	212	271	0	ENST00000378444.4:c.472dup	p.Ser158LysfsTer28	p.S158Kfs*28	ENST00000378444	NM_001123385.1	158	agt/aAgt																																																																															
TET2	54790	MSKCC	GRCh37	4	106157540	106157540	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140017616		P-0089578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	216	567	0	ENST00000380013.4:c.2441G>A	p.Arg814His	p.R814H	ENST00000380013	NM_001127208.2	814	cGt/cAt																																																																															
CTR9	9646	MSKCC	GRCh37	11	10785912	10785912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	214	566	0	ENST00000361367.2:c.1342G>A	p.Asp448Asn	p.D448N	ENST00000361367	NM_014633.3	448	Gat/Aat																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024025	31024039	+	inframe_deletion	In_Frame_Del	DEL	AAGGGCTTTGAAGGA	AAGGGCTTTGAAGGA	-			P-0089578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	147	549	0	ENST00000375687.4:c.3510_3524del	p.Arg1171_Glu1175del	p.R1171_E1175del	ENST00000375687	NM_015338.5	1170	ttAAGGGCTTTGAAGGAg/ttg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	10	408	0	ENST00000250448.2:c.655C>T	p.Arg219Cys	p.R219C	ENST00000250448	NM_004496.3	219	Cgc/Tgc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061236	38061237	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCGGAGTCCGGGTGCAGC			P-0089592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	14	452	0	ENST00000250448.2:c.735_752dup	p.Leu246_Gly251dup	p.L246_G251dup	ENST00000250448	NM_004496.3	246	ggc/ggGCTGCACCCGGACTCCGGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033945-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			223	155	364	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
RB1	5925	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0033945-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			72	124	189	0	ENST00000267163.4:c.1215+1G>T		p.X405_splice	ENST00000267163	NM_000321.2	405																																																																																
MAP2K4	6416	MSKCC	GRCh37	17	12013734	12013734	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033945-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			122	71	189	0	ENST00000353533.5:c.676A>T	p.Ile226Phe	p.I226F	ENST00000353533	NM_003010.3	226	Att/Ttt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61717812	61717812	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033945-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			266	17	241	0	ENST00000401558.2:c.1987C>G	p.Gln663Glu	p.Q663E	ENST00000401558	NM_003400.3	663	Caa/Gaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132756	152132756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033945-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			223	78	409	0	ENST00000262189.6:c.116G>T	p.Arg39Leu	p.R39L	ENST00000262189	NM_170606.2	39	cGg/cTg																																																																															
ATR	545	MSKCC	GRCh37	3	142266692	142266692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033945-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			194	73	238	0	ENST00000350721.4:c.3232G>A	p.Glu1078Lys	p.E1078K	ENST00000350721	NM_001184.3	1078	Gaa/Aaa																																																																															
IRF4	3662	MSKCC	GRCh37	6	401778	401778	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0033945-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			406	193	330	0	ENST00000380956.4:c.1099+1G>T		p.X367_splice	ENST00000380956	NM_001195286.1	367																																																																																
STAG2	10735	MSKCC	GRCh37	X	123227982	123227982	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033945-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			139	41	183	0	ENST00000218089.9:c.3693G>T	p.Met1231Ile	p.M1231I	ENST00000218089	NM_001042749.1	1231	atG/atT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433617	49433617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033945-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	109	321	0	ENST00000301067.7:c.7936G>C	p.Glu2646Gln	p.E2646Q	ENST00000301067	NM_003482.3	2646	Gaa/Caa																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73096492	73096493	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033945-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			96	32	153	0	ENST00000356692.5:c.273dup	p.Thr92HisfsTer4	p.T92Hfs*4	ENST00000356692		91	gtc/gtCc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913400		P-0089490-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	187	424	0	ENST00000349496.5:c.98C>A	p.Ser33Tyr	p.S33Y	ENST00000349496	NM_001904.3	33	tCt/tAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0089490-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	579	380	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838024	156838024	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0089490-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			752	213	509	0	ENST00000524377.1:c.557T>C	p.Met186Thr	p.M186T	ENST00000524377	NM_002529.3	186	aTg/aCg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32813483	32813483	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0089490-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	347	385	0	ENST00000354258.4:c.2300A>T	p.Glu767Val	p.E767V	ENST00000354258	NM_000593.5	767	gAg/gTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053213	180053213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089490-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1120	186	541	0	ENST00000261937.6:c.1156C>A	p.Leu386Ile	p.L386I	ENST00000261937	NM_182925.4	386	Ctc/Atc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0089499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	84	290	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0089499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	75	400	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513282	44513287	+	inframe_deletion	In_Frame_Del	DEL	CCACCG	CCACCG	-	rs769920981		P-0089499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	10	412	0	ENST00000291552.4:c.648_653del	p.Gly222_Gly223del	p.G222_G223del	ENST00000291552	NM_006758.2	216	ggCGGTGGt/ggt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101909966	101909967	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGATCTTG			P-0089499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	66	371	0	ENST00000374994.4:c.1288_1295dup	p.Pro433IlefsTer12	p.P433Ifs*12	ENST00000374994	NM_004612.2	429	tat/taTGATCTTGt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719535	61719535	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0089505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	46	379	0	ENST00000401558.2:c.1648C>G	p.Gln550Glu	p.Q550E	ENST00000401558	NM_003400.3	550	Caa/Gaa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865294	57865294	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	77	381	0	ENST00000228682.2:c.2771C>A	p.Ser924Tyr	p.S924Y	ENST00000228682	NM_005269.2	924	tCc/tAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68857380	68857381	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0089505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	154	349	0	ENST00000261769.5:c.2017dup	p.Gln673ProfsTer3	p.Q673Pfs*3	ENST00000261769	NM_004360.3	672	aac/aaCc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945768	38945768	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0089505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	112	368	0	ENST00000357387.3:c.4458G>C	p.Gln1486His	p.Q1486H	ENST00000357387	NM_152756.3	1486	caG/caC																																																																															
PAK1	5058	MSKCC	GRCh37	11	77066720	77066720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0089505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	70	364	0	ENST00000356341.3:c.765G>C	p.Glu255Asp	p.E255D	ENST00000356341	NM_002576.4	255	gaG/gaC																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612630	228612630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			942	100	421	0	ENST00000366696.1:c.397G>A	p.Gly133Arg	p.G133R	ENST00000366696	NM_003493.2	133	Ggg/Agg																																																																															
ATRX	546	MSKCC	GRCh37	X	76952132	76952132	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0089505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	68	277	0	ENST00000373344.5:c.303A>T	p.Glu101Asp	p.E101D	ENST00000373344	NM_000489.3	101	gaA/gaT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610265	10610265	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	130	818	0	ENST00000171111.5:c.445G>T	p.Glu149Ter	p.E149*	ENST00000171111	NM_203500.1	149	Gag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1207029	1207029	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0089661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	107	627	0	ENST00000326873.7:c.118del	p.Arg40AlafsTer11	p.R40Afs*11	ENST00000326873	NM_000455.4	39	cgC/cg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843604	156843604	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1044149705		P-0089661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	126	823	0	ENST00000524377.1:c.1030G>A	p.Gly344Arg	p.G344R	ENST00000524377	NM_002529.3	344	Ggg/Agg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0089661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	51	451	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223610	53223610	+	stop_gained	Nonsense_Mutation	SNP	G	G	C	rs782454131		P-0089661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	24	361	0	ENST00000375401.3:c.3749C>G	p.Ser1250Ter	p.S1250*	ENST00000375401	NM_004187.3	1250	tCa/tGa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671988	30671988	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs142707351		P-0089661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	131	850	0	ENST00000376406.3:c.4972T>C	p.Ser1658Pro	p.S1658P	ENST00000376406	NM_014641.2	1658	Tct/Cct																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903772	114903772	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	119	575	0	ENST00000543371.1:c.776G>T	p.Trp259Leu	p.W259L	ENST00000543371	NM_001198531.1	259	tGg/tTg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1920102	1920102	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0089661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	26	768	0	ENST00000382895.3:c.1162A>G	p.Lys388Glu	p.K388E	ENST00000382895	NM_133330.2	388	Aag/Gag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881114	37881114	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0089661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	102	767	0	ENST00000269571.5:c.2444del	p.Gly815AspfsTer9	p.G815Dfs*9	ENST00000269571		815	Gga/ga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306568	41306568	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0089661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	19	574	0	ENST00000373198.4:c.1091G>C	p.Arg364Pro	p.R364P	ENST00000373198	NM_133170.3	364	cGa/cCa																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741887	17741887	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0089661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	58	539	0	ENST00000250003.3:c.560del	p.Gly187AlafsTer24	p.G187Afs*24	ENST00000250003	NM_002478.4	186	ccG/cc																																																																															
TET1	80312	MSKCC	GRCh37	10	70451227	70451228	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0089661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	120	760	0	ENST00000373644.4:c.6067_6068insT	p.Ala2023ValfsTer12	p.A2023Vfs*12	ENST00000373644	NM_030625.2	2023	gcc/gTcc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971134	21971137	+	frameshift_variant	Frame_Shift_Ins	INS	GGGT	GGGT	AGGGC			P-0089661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	88	679	0	ENST00000304494.5:c.221_224delinsGCCCT	p.Asp74GlyfsTer46	p.D74Gfs*46	ENST00000304494	NM_000077.4	74	gACCCc/gGCCCTc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212224	5212224	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151279682		P-0089665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	301	782	0	ENST00000357368.4:c.4807G>A	p.Asp1603Asn	p.D1603N	ENST00000357368	NM_002850.3	1603	Gac/Aac																																																																															
FH	2271	MSKCC	GRCh37	1	241669445	241669445	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0089665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	355	448	0	ENST00000366560.3:c.762A>T	p.Gln254His	p.Q254H	ENST00000366560	NM_000143.3	254	caA/caT																																																																															
MDM2	4193	MSKCC	GRCh37	12	69222661	69222661	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	277	607	0	ENST00000462284.1:c.634T>G	p.Cys212Gly	p.C212G	ENST00000462284	NM_002392.5	212	Tgt/Ggt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646655	23646655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0089665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	294	661	1	ENST00000261584.4:c.1212del	p.Pro405LeufsTer19	p.P405Lfs*19	ENST00000261584	NM_024675.3	404	ttT/tt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99181120	99181120	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	341	666	0	ENST00000074304.5:c.2061C>A	p.Cys687Ter	p.C687*	ENST00000074304	NM_001134224.1	687	tgC/tgA																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250146	26250629	+	coding_sequence_variant,3_prime_UTR_variant	Frame_Shift_Del	DEL	GAATTCCTGACCTTTGTATAAGTAACCCGCCCTCCTCGGGCTCCCACAGTACTGGGATTACAAGGCGTGAGCCGCCACTATCGGCCATTTTGAAGACAATGGCCAAGACACAAAAGCCTAGTTTAGAAGAGCCACCGGCCCTGCCCCCATCCCCTAACCCTCCACCCTCCTTGTTTTAGGAGACATTACTCCCTAGTGCTACGGCGCTTTCAACTGAAATTGTTGGTGGCTCTGAAAAGAGCCTTTGGTTTAAGTTGGCGCACACCCTCAGTACAACTTATGCCCTCTCTCCGCGAATGCGGCGAGCGAGCTGGATGTCCTTGGGCATGATAGTCACTCGCTTGGCGTGGATAGCACACAGGTTGGTGTCCTCAAAGAGCCCCACCAGGTAAGCCTCGCAGGCCTCCTGCAGCGCCATCACAGCCGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGCGCGATCTCACGTACCAGACGCTG	GAATTCCTGACCTTTGTATAAGTAACCCGCCCTCCTCGGGCTCCCACAGTACTGGGATTACAAGGCGTGAGCCGCCACTATCGGCCATTTTGAAGACAATGGCCAAGACACAAAAGCCTAGTTTAGAAGAGCCACCGGCCCTGCCCCCATCCCCTAACCCTCCACCCTCCTTGTTTTAGGAGACATTACTCCCTAGTGCTACGGCGCTTTCAACTGAAATTGTTGGTGGCTCTGAAAAGAGCCTTTGGTTTAAGTTGGCGCACACCCTCAGTACAACTTATGCCCTCTCTCCGCGAATGCGGCGAGCGAGCTGGATGTCCTTGGGCATGATAGTCACTCGCTTGGCGTGGATAGCACACAGGTTGGTGTCCTCAAAGAGCCCCACCAGGTAAGCCTCGCAGGCCTCCTGCAGCGCCATCACAGCCGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGCGCGATCTCACGTACCAGACGCTG	-			P-0089665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			50	275	52	0				ENST00000446824	NM_021018.2	69		1-Jan																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0087846-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	136	412	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0087846-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	63	406	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579467	7579467	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0087846-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	147	510	0	ENST00000269305.4:c.220del	p.Ala74ProfsTer49	p.A74Pfs*49	ENST00000269305	NM_001126112.2	74	Gcc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0087846-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	69	257	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERF	2077	MSKCC	GRCh37	19	42752943	42752943	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0087846-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	131	516	0	ENST00000222329.4:c.1321A>G	p.Thr441Ala	p.T441A	ENST00000222329	NM_006494.2	441	Act/Gct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0088996-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			407	738	434	0	ENST00000269305.4:c.672G>C	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaC																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741900	17741900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088996-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	357	302	0	ENST00000250003.3:c.571G>A	p.Glu191Lys	p.E191K	ENST00000250003	NM_002478.4	191	Gag/Aag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118380821	118380821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088996-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	64	291	0	ENST00000534358.1:c.11059G>A	p.Glu3687Lys	p.E3687K	ENST00000534358	NM_005933.3	3687	Gaa/Aaa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28979961	28979961	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0088996-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			148	38	343	0	ENST00000282397.4:c.1507G>C	p.Glu503Gln	p.E503Q	ENST00000282397	NM_002019.4	503	Gag/Cag																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607697	46607697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088996-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			930	51	452	0	ENST00000263734.3:c.1886C>A	p.Ser629Tyr	p.S629Y	ENST00000263734	NM_001430.4	629	tCt/tAt																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111907652	111907658	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCCCA	GCGCCCA	-			P-0088996-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			793	107	326	0	ENST00000393256.3:c.427_433del	p.Pro144TyrfsTer24	p.P144Yfs*24	ENST00000393256	NM_006538.4	142	atGCGCCCA/at																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646325	3646325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088996-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			644	157	441	0	ENST00000294008.3:c.1753C>T	p.Pro585Ser	p.P585S	ENST00000294008	NM_032444.2	585	Ccc/Tcc																																																																															
CD274	29126	MSKCC	GRCh37	9	5466819	5466819	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0088996-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			522	46	423	0	ENST00000381577.3:c.840G>C	p.Lys280Asn	p.K280N	ENST00000381577	NM_014143.3	280	aaG/aaC																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435373	18435373	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088996-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	19	344	0	ENST00000266497.5:c.358A>G	p.Thr120Ala	p.T120A	ENST00000266497		120	Acg/Gcg																																																																															
MYC	4609	MSKCC	GRCh37	8	128750684	128750684	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1294281543		P-0089352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	78	457	0	ENST00000377970.2:c.221C>T	p.Pro74Leu	p.P74L	ENST00000377970	NM_002467.4	74	cCg/cTg																																																																															
AXL	558	MSKCC	GRCh37	19	41726618	41726618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	39	400	0	ENST00000301178.4:c.163C>T	p.Arg55Trp	p.R55W	ENST00000301178	NM_021913.4	55	Cgg/Tgg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519968		P-0089514-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	134	445	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																															
B2M	567	MSKCC	GRCh37	15	45007782	45007782	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0089514-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	38	494	0	ENST00000558401.1:c.229A>T	p.Ser77Cys	p.S77C	ENST00000558401	NM_004048.2	77	Agc/Tgc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174420	11174420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587777900		P-0089530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	42	391	0	ENST00000361445.4:c.7255G>A	p.Glu2419Lys	p.E2419K	ENST00000361445	NM_004958.3	2419	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0089530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	212	349	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427279	49427279	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0089530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	148	603	0	ENST00000301067.7:c.11209C>T	p.Gln3737Ter	p.Q3737*	ENST00000301067	NM_003482.3	3737	Cag/Tag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0089530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	12	515	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967255	134967255	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751581569		P-0089530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	127	556	0	ENST00000398015.3:c.2594G>A	p.Arg865Gln	p.R865Q	ENST00000398015	NM_004441.4	865	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0089530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	43	449	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0089530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	88	379	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175531	112175532	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0089530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	184	559	0	ENST00000257430.4:c.4241dup	p.Ser1415LysfsTer8	p.S1415Kfs*8	ENST00000257430	NM_000038.5	1414	gta/gTta																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858393	27858393	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0089530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	114	637	0	ENST00000359303.2:c.178G>C	p.Glu60Gln	p.E60Q	ENST00000359303	NM_003535.2	60	Gag/Cag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0089530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	75	512	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
TEK	7010	MSKCC	GRCh37	9	27212783	27212783	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754385594		P-0089530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	164	465	1	ENST00000380036.4:c.2765C>T	p.Thr922Met	p.T922M	ENST00000380036	NM_000459.3	922	aCg/aTg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7989345	7989345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	32	476	0	ENST00000319144.4:c.341G>T	p.Arg114Leu	p.R114L	ENST00000319144	NM_001139.2	114	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs483352695		P-0089534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	65	319	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0089534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	20	260	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57470677	57470677	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0089534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	30	308	0	ENST00000371085.3:c.150A>T	p.Glu50Asp	p.E50D	ENST00000371085	NM_000516.4	50	gaA/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0089535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	129	495	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0089535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	24	253	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023895	27023895	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0089535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	40	486	0	ENST00000324856.7:c.1001C>G	p.Ser334Trp	p.S334W	ENST00000324856	NM_006015.4	334	tCg/tGg																																																																															
APC	324	MSKCC	GRCh37	5	112163696	112163697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0089535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	44	336	0	ENST00000257430.4:c.1620dup	p.Gln541ThrfsTer19	p.Q541Tfs*19	ENST00000257430	NM_000038.5	540	tta/ttAa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112388	115112388	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs565848855		P-0089535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	73	481	0	ENST00000257566.3:c.1352C>T	p.Ala451Val	p.A451V	ENST00000257566	NM_016569.3	451	gCg/gTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41573382	41573382	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0089535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	87	571	0	ENST00000263253.7:c.5667G>C	p.Arg1889Ser	p.R1889S	ENST00000263253	NM_001429.3	1889	agG/agC																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911623	114911623	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0089535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	151	420	0	ENST00000543371.1:c.1141A>G	p.Asn381Asp	p.N381D	ENST00000543371	NM_001198531.1	381	Aac/Gac																																																																															
APC	324	MSKCC	GRCh37	5	112175514	112175577	+	frameshift_variant	Frame_Shift_Del	DEL	AACCATGCAGTGGAATGGTAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACA	AACCATGCAGTGGAATGGTAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACA	-			P-0089535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	126	443	0	ENST00000257430.4:c.4231_4294del	p.Ser1411HisfsTer41	p.S1411Hfs*41	ENST00000257430	NM_000038.5	1408	gAACCATGCAGTGGAATGGTAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACAa/ga																																																																															
CYLD	1540	MSKCC	GRCh37	16	50828171	50828171	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	65	421	0	ENST00000398568.2:c.2509C>A	p.Leu837Ile	p.L837I	ENST00000398568	NM_001042412.1	837	Ctt/Att																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913315		P-0089538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	41	446	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177998	56177998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	53	433	0	ENST00000399503.3:c.2971C>T	p.Pro991Ser	p.P991S	ENST00000399503	NM_005921.1	991	Cca/Tca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971194	21971194	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs561034503		P-0089538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	26	388	2	ENST00000304494.5:c.164G>A	p.Gly55Asp	p.G55D	ENST00000304494	NM_000077.4	55	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0089538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	58	285	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610353	10610354	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0089538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	29	452	0	ENST00000171111.5:c.356dup	p.Met120HisfsTer7	p.M120Hfs*7	ENST00000171111	NM_203500.1	119	ggc/ggGc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39584480	39584480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	42	411	0	ENST00000262039.4:c.1145C>T	p.Ala382Val	p.A382V	ENST00000262039	NM_002647.2	382	gCc/gTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15297757	15297757	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0089538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	36	359	0	ENST00000263388.2:c.1883C>G	p.Pro628Arg	p.P628R	ENST00000263388	NM_000435.2	628	cCc/cGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0089540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	48	408	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0089540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	54	537	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
TERT	7015	MSKCC	GRCh37	5	1293901	1293901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	49	494	0	ENST00000310581.5:c.1100G>A	p.Gly367Asp	p.G367D	ENST00000310581	NM_198253.2	367	gGt/gAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29653262	29653262	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0089540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	97	437	0	ENST00000358273.4:c.5260T>C	p.Ser1754Pro	p.S1754P	ENST00000358273	NM_001042492.2	1754	Tct/Cct																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150933405	150933405	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0089006-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			140	67	471	0	ENST00000271640.5:c.2867A>G	p.His956Arg	p.H956R	ENST00000271640	NM_001145415.1	956	cAt/cGt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460401	149460401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	375	622	0	ENST00000286301.3:c.236C>T	p.Thr79Met	p.T79M	ENST00000286301	NM_005211.3	79	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0089443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	299	538	0	ENST00000269305.4:c.686_687del	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524486	44524486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0089443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	182	431	0	ENST00000291552.4:c.71T>C	p.Ile24Thr	p.I24T	ENST00000291552	NM_006758.2	24	aTt/aCt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68939478	68939478	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139157434		P-0089443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	192	429	0	ENST00000288368.4:c.463C>T	p.Arg155Trp	p.R155W	ENST00000288368	NM_024870.2	155	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0089443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	220	341	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149436911	149436911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	161	611	0	ENST00000286301.3:c.2258G>A	p.Arg753Gln	p.R753Q	ENST00000286301	NM_005211.3	753	cGg/cAg																																																																															
MSH3	4437	MSKCC	GRCh37	5	80169036	80169036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	266	544	0	ENST00000265081.6:c.3232G>A	p.Val1078Ile	p.V1078I	ENST00000265081	NM_002439.4	1078	Gtt/Att																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575117	48575118	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0089443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	175	471	0	ENST00000342988.3:c.311_312del	p.Leu104ProfsTer4	p.L104Pfs*4	ENST00000342988	NM_005359.5	104	cTT/c																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341772	8341772	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs773553807		P-0089444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	78	501	0	ENST00000356435.5:c.4868G>C	p.Arg1623Thr	p.R1623T	ENST00000356435		1623	aGa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0089444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	171	610	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0089444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	111	269	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218860	36218860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	79	723	0	ENST00000222270.7:c.4471G>T	p.Gly1491Cys	p.G1491C	ENST00000222270	NM_014727.1	1491	Ggc/Tgc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650612	48650612	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0089444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	164	674	4	ENST00000376670.3:c.586del	p.Leu196CysfsTer10	p.L196Cfs*10	ENST00000376670	NM_002049.3	194	ctC/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433686	49433686	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0089444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	80	604	0	ENST00000301067.7:c.7867G>C	p.Gly2623Arg	p.G2623R	ENST00000301067	NM_003482.3	2623	Gga/Cga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390969	89390969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	139	430	0	ENST00000336596.2:c.1035G>T	p.Trp345Cys	p.W345C	ENST00000336596	NM_005233.5	345	tgG/tgT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0089445-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	70	502	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68771319	68771319	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0089445-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	75	333	0	ENST00000261769.5:c.1A>G	p.Met1?	p.M1?	ENST00000261769	NM_004360.3	1	Atg/Gtg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557376	21557376	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0089445-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	29	403	0	ENST00000382592.4:c.2469A>T	p.Lys823Asn	p.K823N	ENST00000382592	NM_014572.2	823	aaA/aaT																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185184615	185184615	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs151275315		P-0089447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			89	48	506	0	ENST00000265026.3:c.1507C>T	p.Arg503Cys	p.R503C	ENST00000265026	NM_004721.4	503	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0089447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	148	600	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913233		P-0089447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	253	734	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89712010	89712011	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	T			P-0089447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			51	24	347	0	ENST00000371953.3:c.628_629delinsT	p.Thr210PhefsTer11	p.T210Ffs*11	ENST00000371953	NM_000314.4	210	ACt/Tt																																																																															
ATM	472	MSKCC	GRCh37	11	108201008	108201008	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730881383		P-0089478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	180	509	0	ENST00000278616.4:c.7375C>T	p.Arg2459Cys	p.R2459C	ENST00000278616	NM_000051.3	2459	Cgt/Tgt																																																																															
AKT1	207	MSKCC	GRCh37	14	105243048	105243048	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519804		P-0089478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	131	598	0	ENST00000349310.3:c.235C>A	p.Gln79Lys	p.Q79K	ENST00000349310	NM_001014432.1	79	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0089478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	189	505	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0089478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	237	541	0	ENST00000257430.4:c.4037C>G	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tGa																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321297	1321297	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370445430		P-0089478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	244	615	0	ENST00000381566.1:c.458G>A	p.Arg153Gln	p.R153Q	ENST00000381566		153	cGg/cAg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573205	64573205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	79	671	0	ENST00000337652.1:c.1102G>A	p.Glu368Lys	p.E368K	ENST00000337652	NM_130803.2	368	Gag/Aag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1422891742		P-0089481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	37	455	0	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368223	45368223	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	79	486	0	ENST00000262160.6:c.1379C>A	p.Ser460Ter	p.S460*	ENST00000262160	NM_005901.5	460	tCa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112175753	112175754	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0089481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	48	628	0	ENST00000257430.4:c.4464_4465dup	p.Leu1489TyrfsTer19	p.L1489Yfs*19	ENST00000257430	NM_000038.5	1488	tta/tTAta																																																																															
STAG2	10735	MSKCC	GRCh37	X	123217393	123217393	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	29	374	0	ENST00000218089.9:c.3047G>T	p.Arg1016Ile	p.R1016I	ENST00000218089	NM_001042749.1	1016	aGa/aTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0089481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	23	320	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118879	70118879	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0089481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			744	57	711	0	ENST00000245479.2:c.451A>G	p.Lys151Glu	p.K151E	ENST00000245479	NM_000346.3	151	Aag/Gag																																																																															
GNA11	2767	MSKCC	GRCh37	19	3119239	3119240	+	missense_variant	Missense_Mutation	DNP	CA	CA	TG			P-0089481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	111	661	0	ENST00000078429.4:c.771_772inv	p.Ile258Val	p.I258V	ENST00000078429	NM_002067.2	257	acCAtc/acTGtc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0081460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	93	394	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175858	112175858	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0081460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	15	481	0	ENST00000257430.4:c.4567A>T	p.Arg1523Ter	p.R1523*	ENST00000257430	NM_000038.5	1523	Aga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175840	112175840	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1114167596		P-0081460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			69	74	464	0	ENST00000257430.4:c.4549C>T	p.Gln1517Ter	p.Q1517*	ENST00000257430	NM_000038.5	1517	Cag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109893	115109893	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	92	475	0	ENST00000257566.3:c.1985C>G	p.Ser662Cys	p.S662C	ENST00000257566	NM_016569.3	662	tCc/tGc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205413	38205413	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	103	491	0	ENST00000317025.8:c.277C>A	p.Pro93Thr	p.P93T	ENST00000317025	NM_023034.1	93	Cct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0088810-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			723	265	570	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0088810-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	209	484	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1218446	1218447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0088810-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	87	401	1	ENST00000326873.7:c.326dup	p.Asn109LysfsTer54	p.N109Kfs*54	ENST00000326873	NM_000455.4	107	-/A																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604797	48604797	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088810-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	181	443	0	ENST00000342988.3:c.1619T>C	p.Leu540Pro	p.L540P	ENST00000342988	NM_005359.5	540	cTt/cCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0088810-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	233	269	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67663404	67663404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088810-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			804	164	445	0	ENST00000264010.4:c.1805T>C	p.Met602Thr	p.M602T	ENST00000264010	NM_006565.3	602	aTg/aCg																																																																															
SMYD3	64754	MSKCC	GRCh37	1	245912966	245912966	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0088810-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			661	123	358	0	ENST00000388985.4:c.1186G>A	p.Ala396Thr	p.A396T	ENST00000388985		396	Gct/Act																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879589	151879590	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0088810-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			829	181	474	0	ENST00000262189.6:c.5355dup	p.Gln1786ThrfsTer19	p.Q1786Tfs*19	ENST00000262189	NM_170606.2	1785	-/A																																																																															
BRCA2	675	MSKCC	GRCh37	13	32945237	32945237	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs398122710		P-0089364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	107	251	0	ENST00000380152.3:c.8632G>A	p.Glu2878Lys	p.E2878K	ENST00000380152		2878	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578397	7578397	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			869	165	455	0	ENST00000269305.4:c.533A>C	p.His178Pro	p.H178P	ENST00000269305	NM_001126112.2	178	cAc/cCc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021182	31021182	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201899433		P-0089364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			833	165	402	0	ENST00000375687.4:c.1181G>A	p.Arg394His	p.R394H	ENST00000375687	NM_015338.5	394	cGt/cAt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135779816	135779816	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768189353		P-0089364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	93	211	0	ENST00000298552.3:c.2023G>A	p.Asp675Asn	p.D675N	ENST00000298552	NM_001162426.1	675	Gac/Aac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949017	44949017	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	102	362	0	ENST00000377967.4:c.3578G>T	p.Trp1193Leu	p.W1193L	ENST00000377967	NM_021140.2	1193	tGg/tTg																																																																															
AR	367	MSKCC	GRCh37	X	66937385	66937385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			773	125	332	0	ENST00000374690.3:c.2239G>T	p.Val747Leu	p.V747L	ENST00000374690	NM_000044.3	747	Gtg/Ttg																																																																															
APLNR	187	MSKCC	GRCh37	11	57003557	57003557	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A			P-0089364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			924	190	512	0	ENST00000257254.3:c.922C>T	p.Leu308Phe	p.L308F	ENST00000257254		308	Ctc/Ttc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821259	72821259	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0089364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	83	368	0	ENST00000268489.5:c.10916C>G	p.Ser3639Ter	p.S3639*	ENST00000268489	NM_006885.3	3639	tCa/tGa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098956	+	inframe_deletion	In_Frame_Del	DEL	GACTTACTCCAA	GACTTACTCCAA	-			P-0089364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			909	56	319	0	ENST00000397062.3:c.89_100del	p.Leu30_Ser33del	p.L30_S33del	ENST00000397062	NM_006164.4	30	cTTGGAGTAAGTCga/cga																																																																															
ALB	213	MSKCC	GRCh37	4	74270094	74270094	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	102	322	0	ENST00000295897.4:c.50A>C	p.Tyr17Ser	p.Y17S	ENST00000295897	NM_000477.5	17	tAt/tCt																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2191295	2191295	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0089364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			806	221	380	0	ENST00000349721.2:c.4624A>G	p.Asn1542Asp	p.N1542D	ENST00000349721	NM_003070.3	1542	Aat/Gat																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15808660	15808660	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0089364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			746	128	298	0	ENST00000307771.7:c.41+1G>A		p.X14_splice	ENST00000307771	NM_005089.3	14																																																																																
AMER1	139285	MSKCC	GRCh37	X	63410428	63410428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			932	150	503	0	ENST00000330258.3:c.2739G>T	p.Gln913His	p.Q913H	ENST00000330258	NM_152424.3	913	caG/caT																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0089372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	254	329	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444384	50444384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761574077		P-0089372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	383	558	1	ENST00000331340.3:c.314C>T	p.Ser105Leu	p.S105L	ENST00000331340	NM_006060.4	105	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0089372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	341	487	0	ENST00000269305.4:c.838A>T	p.Arg280Ter	p.R280*	ENST00000269305	NM_001126112.2	280	Aga/Tga																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552838	106552838	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367766895		P-0089372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	399	555	0	ENST00000369096.4:c.803G>A	p.Arg268His	p.R268H	ENST00000369096	NM_001198.3	268	cGt/cAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858151	9858151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	174	479	0	ENST00000330684.3:c.3250G>T	p.Asp1084Tyr	p.D1084Y	ENST00000330684	NM_001134407.1	1084	Gac/Tac																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563123	21563123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			927	62	539	0	ENST00000382592.4:c.796G>A	p.Gly266Ser	p.G266S	ENST00000382592	NM_014572.2	266	Ggc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0089377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	138	372	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106554258	106554258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	82	377	0	ENST00000369096.4:c.1786G>A	p.Val596Met	p.V596M	ENST00000369096	NM_001198.3	596	Gtg/Atg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521442	187521443	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	T			P-0089377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			705	62	447	0	ENST00000441802.2:c.11712_11713delinsA	p.Gln3905ArgfsTer14	p.Q3905Rfs*14	ENST00000441802	NM_005245.3	3904	atTCag/atAag																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719670	190719670	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	20	367	0	ENST00000441310.2:c.1672G>T	p.Gly558Ter	p.G558*	ENST00000441310	NM_000534.4	558	Gga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0089378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	126	290	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133214619	133214619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	49	443	0	ENST00000320574.5:c.5659G>T	p.Val1887Leu	p.V1887L	ENST00000320574	NM_006231.2	1887	Gtg/Ttg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730072	41730072	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	89	425	0	ENST00000242208.4:c.457G>T	p.Ala153Ser	p.A153S	ENST00000242208	NM_002192.2	153	Gca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0089401-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	319	887	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
AKT3	10000	MSKCC	GRCh37	1	243716094	243716094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089401-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	132	518	0	ENST00000263826.5:c.1100G>A	p.Arg367Gln	p.R367Q	ENST00000263826	NM_005465.4	367	cGa/cAa																																																																															
LYN	4067	MSKCC	GRCh37	8	56910933	56910933	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201895605		P-0089401-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	231	591	0	ENST00000519728.1:c.1079G>A	p.Arg360Gln	p.R360Q	ENST00000519728	NM_002350.3	360	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0089401-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	349	450	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524445	44524445	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089401-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	217	551	0	ENST00000291552.4:c.112A>C	p.Asn38His	p.N38H	ENST00000291552	NM_006758.2	38	Aat/Cat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591961	48591961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089401-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	188	681	0	ENST00000342988.3:c.1124C>T	p.Ala375Val	p.A375V	ENST00000342988	NM_005359.5	375	gCc/gTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971383	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCA	CCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCA	-			P-0089401-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	80	708	0	ENST00000304494.5:c.151-176_262del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	276	754	0	ENST00000269305.4:c.380C>A	p.Ser127Tyr	p.S127Y	ENST00000269305	NM_001126112.2	127	tCc/tAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992719	68992719	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778128731		P-0089403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	168	539	0	ENST00000288368.4:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000288368	NM_024870.2	562	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112111325	112111325	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C	rs397514031		P-0089403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			79	68	287	0	ENST00000257430.4:c.423-1G>C		p.X141_splice	ENST00000257430	NM_000038.5	141																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176522339	176522339	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0089403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	113	610	0	ENST00000292408.4:c.1528T>C	p.Ser510Pro	p.S510P	ENST00000292408	NM_213647.1	510	Tct/Cct																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46740375	46740375	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0089403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	136	685	0	ENST00000371975.4:c.1855T>A	p.Tyr619Asn	p.Y619N	ENST00000371975	NM_003579.3	619	Tac/Aac																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519972		P-0089404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	154	643	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																															
TET2	54790	MSKCC	GRCh37	4	106157953	106157953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0089404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	48	718	0	ENST00000380013.4:c.2854C>G	p.Leu952Val	p.L952V	ENST00000380013	NM_001127208.2	952	Cta/Gta																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832275	72832281	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGACA	GCTGACA	-			P-0089404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	43	664	0	ENST00000268489.5:c.4300_4306del	p.Cys1434AlafsTer9	p.C1434Afs*9	ENST00000268489	NM_006885.3	1434	TGTCAGCgc/gc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248985	55248985	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0089413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1499	186	401	0	ENST00000275493.2:c.2284-1G>A		p.X762_splice	ENST00000275493	NM_005228.3	762																																																																																
MYOD1	4654	MSKCC	GRCh37	11	17741576	17741576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	103	419	0	ENST00000250003.3:c.247G>A	p.Ala83Thr	p.A83T	ENST00000250003	NM_002478.4	83	Gcg/Acg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0089450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	91	287	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs28934577		P-0089450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	137	476	0	ENST00000269305.4:c.770T>G	p.Leu257Arg	p.L257R	ENST00000269305	NM_001126112.2	257	cTg/cGg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249468	153249468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	135	454	0	ENST00000281708.4:c.1310G>A	p.Gly437Glu	p.G437E	ENST00000281708	NM_033632.3	437	gGa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0089450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	93	323	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108142126	108142126	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	90	420	0	ENST00000278616.4:c.3070G>T	p.Ala1024Ser	p.A1024S	ENST00000278616	NM_000051.3	1024	Gca/Tca																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30309687	30309687	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0089450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			743	391	620	0	ENST00000307677.4:c.335T>C	p.Leu112Pro	p.L112P	ENST00000307677	NM_138578.1	112	cTc/cCc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332815	153332818	+	frameshift_variant	Frame_Shift_Del	DEL	TTGT	TTGT	-			P-0089450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	153	562	0	ENST00000281708.4:c.138_141del	p.Arg46SerfsTer16	p.R46Sfs*16	ENST00000281708	NM_033632.3	46	agACAA/ag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267383	198267383	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	207	503	0	ENST00000335508.6:c.1974G>T	p.Trp658Cys	p.W658C	ENST00000335508	NM_012433.2	658	tgG/tgT																																																																															
ATM	472	MSKCC	GRCh37	11	108129798	108129803	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	GTTTAG	GTTTAG	C			P-0089451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	55	349	0	ENST00000278616.4:c.2462_2466+1delinsC		p.X821_splice	ENST00000278616	NM_000051.3	821																																																																																
SETD2	29072	MSKCC	GRCh37	3	47162785	47162785	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	81	431	0	ENST00000409792.3:c.3341A>C	p.Glu1114Ala	p.E1114A	ENST00000409792	NM_014159.6	1114	gAg/gCg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	49	363	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	50	331	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911534	101911534	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111426349		P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	58	386	0	ENST00000374994.4:c.1459C>T	p.Arg487Trp	p.R487W	ENST00000374994	NM_004612.2	487	Cgg/Tgg																																																																															
CCND1	595	MSKCC	GRCh37	11	69466021	69466021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	98	596	0	ENST00000227507.2:c.859C>T	p.Pro287Ser	p.P287S	ENST00000227507	NM_053056.2	287	Ccc/Tcc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	60	386	0	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			815	91	639	1	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																															
B2M	567	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	76	462	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
TSC1	7248	MSKCC	GRCh37	9	135772950	135772951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs118203724		P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	65	375	0	ENST00000298552.3:c.2672dup	p.Asn891LysfsTer13	p.N891Kfs*13	ENST00000298552	NM_001162426.1	891	aac/aaAc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781440	135781440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs118203542		P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	94	532	2	ENST00000298552.3:c.1525C>T	p.Arg509Ter	p.R509*	ENST00000298552	NM_001162426.1	509	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140482926	140482927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs777474487		P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	66	476	1	ENST00000288602.6:c.1208dup	p.Ala404CysfsTer9	p.A404Cfs*9	ENST00000288602	NM_004333.4	403	cct/ccCt																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	83	493	0	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027140	71027140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	86	597	0	ENST00000318789.4:c.1187C>T	p.Ser396Leu	p.S396L	ENST00000318789	NM_032682.5	396	tCg/tTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781321	3781321	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200112956		P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			754	75	572	0	ENST00000262367.5:c.5044C>T	p.Arg1682Cys	p.R1682C	ENST00000262367	NM_004380.2	1682	Cgc/Tgc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962888	2962888	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1016457945		P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	86	525	0	ENST00000396946.4:c.2020G>A	p.Asp674Asn	p.D674N	ENST00000396946	NM_032415.4	674	Gac/Aac																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	100	317	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347752	89347752	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148243995		P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			755	115	644	0	ENST00000301030.4:c.5198C>T	p.Ala1733Val	p.A1733V	ENST00000301030	NM_001256183.1	1733	gCg/gTg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741658	17741658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	91	610	0	ENST00000250003.3:c.329G>A	p.Arg110His	p.R110H	ENST00000250003	NM_002478.4	110	cGc/cAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434477	110434477	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747968639		P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	76	512	1	ENST00000375856.3:c.3924del	p.Pro1309ArgfsTer22	p.P1309Rfs*22	ENST00000375856	NM_003749.2	1308	ggG/gg																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125497572	125497572	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768467449		P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	70	413	2	ENST00000428830.2:c.136G>A	p.Val46Ile	p.V46I	ENST00000428830	NM_001114121.2	46	Gta/Ata																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420204	49420204	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			714	74	626	0	ENST00000301067.7:c.15545del	p.Gly5182AlafsTer61	p.G5182Afs*61	ENST00000301067	NM_003482.3	5182	gGc/gc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751531	57751531	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55645589		P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	78	505	0	ENST00000274289.3:c.1460C>T	p.Pro487Leu	p.P487L	ENST00000274289	NM_006622.3	487	cCg/cTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69002946	69002946	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146486437		P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	63	335	0	ENST00000288368.4:c.2246C>T	p.Thr749Met	p.T749M	ENST00000288368	NM_024870.2	749	aCg/aTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70446447	70446447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	82	485	0	ENST00000373644.4:c.5387C>T	p.Ser1796Leu	p.S1796L	ENST00000373644	NM_030625.2	1796	tCg/tTg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552927	106552927	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776111636		P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			801	92	608	0	ENST00000369096.4:c.892G>A	p.Val298Ile	p.V298I	ENST00000369096	NM_001198.3	298	Gtt/Att																																																																															
EP300	2033	MSKCC	GRCh37	22	41551019	41551019	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs886041830		P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	56	361	0	ENST00000263253.7:c.3163C>T	p.Arg1055Ter	p.R1055*	ENST00000263253	NM_001429.3	1055	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629475	187629475	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765412973		P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	88	527	0	ENST00000441802.2:c.1507G>A	p.Ala503Thr	p.A503T	ENST00000441802	NM_005245.3	503	Gca/Aca																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372112	55372112	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1385441707		P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	101	635	0	ENST00000297316.4:c.802G>A	p.Gly268Ser	p.G268S	ENST00000297316	NM_022454.3	268	Ggt/Agt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434409	49434409	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3741626		P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			777	95	715	0	ENST00000301067.7:c.7144C>T	p.Pro2382Ser	p.P2382S	ENST00000301067	NM_003482.3	2382	Cca/Tca																																																																															
POLE	5426	MSKCC	GRCh37	12	133208998	133208998	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745721448		P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	82	533	0	ENST00000320574.5:c.6233G>A	p.Arg2078Gln	p.R2078Q	ENST00000320574	NM_006231.2	2078	cGg/cAg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17954623	17954623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	111	624	0	ENST00000458235.1:c.271G>A	p.Glu91Lys	p.E91K	ENST00000458235	NM_000215.3	91	Gag/Aag																																																																															
TEK	7010	MSKCC	GRCh37	9	27169624	27169624	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762239847		P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	63	425	0	ENST00000380036.4:c.625C>T	p.Arg209Trp	p.R209W	ENST00000380036	NM_000459.3	209	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604772	48604772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	71	495	1	ENST00000342988.3:c.1594G>A	p.Ala532Thr	p.A532T	ENST00000342988	NM_005359.5	532	Gcc/Acc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650878	37650878	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	80	440	0	ENST00000447079.4:c.2350C>T	p.Arg784Ter	p.R784*	ENST00000447079	NM_015083.1	784	Cga/Tga																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213383	39213383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	90	503	2	ENST00000402219.2:c.3584G>A	p.Arg1195Gln	p.R1195Q	ENST00000402219	NM_005633.3	1195	cGa/cAa																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17384941	17384941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	96	528	0	ENST00000359435.4:c.491G>A	p.Arg164His	p.R164H	ENST00000359435	NM_001033549.1	164	cGc/cAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144049	11144051	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			724	64	605	0	ENST00000344626.4:c.3634_3636del	p.Glu1212del	p.E1212del	ENST00000344626	NM_003072.3	1210	gtGGAg/gtg																																																																															
B2M	567	MSKCC	GRCh37	15	45007811	45007811	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	100	497	0	ENST00000558401.1:c.258C>A	p.Tyr86Ter	p.Y86*	ENST00000558401	NM_004048.2	86	taC/taA																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891286	101891286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	66	471	0	ENST00000374994.4:c.247C>T	p.Pro83Ser	p.P83S	ENST00000374994	NM_004612.2	83	Ccg/Tcg																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652341	48652341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			742	109	676	0	ENST00000376670.3:c.1012G>A	p.Ala338Thr	p.A338T	ENST00000376670	NM_002049.3	338	Gct/Act																																																																															
CASP8	841	MSKCC	GRCh37	2	202149664	202149664	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	110	526	1	ENST00000358485.4:c.1105T>G	p.Phe369Val	p.F369V	ENST00000358485	NM_001080125.1	369	Ttc/Gtc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057698	27057699	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			715	123	622	0	ENST00000324856.7:c.1406_1407del	p.Pro469LeufsTer153	p.P469Lfs*153	ENST00000324856	NM_006015.4	469	cCA/c																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961377	15961377	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	56	410	0	ENST00000268712.3:c.6012T>G	p.Asn2004Lys	p.N2004K	ENST00000268712	NM_006311.3	2004	aaT/aaG																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898391	63898393	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	24	313	0	ENST00000295900.6:c.123_125del	p.Pro43del	p.P43del	ENST00000295900	NM_000333.3	39	caGCCg/cag																																																																															
TCF3	6929	MSKCC	GRCh37	19	1623948	1623948	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	82	352	0	ENST00000344749.5:c.549+2T>C		p.X183_splice	ENST00000344749	NM_001136139.2	183																																																																																
INHBA	3624	MSKCC	GRCh37	7	41729807	41729807	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	73	513	0	ENST00000242208.4:c.722G>T	p.Arg241Leu	p.R241L	ENST00000242208	NM_002192.2	241	cGg/cTg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56865898	56865899	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	58	455	0	ENST00000308159.5:c.1230_1231del	p.Glu411GlyfsTer13	p.E411Gfs*13	ENST00000308159	NM_014669.4	410	acTGag/acag																																																																															
NADK	65220	MSKCC	GRCh37	1	1685554	1685554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			716	65	562	0	ENST00000341426.5:c.1037C>T	p.Thr346Met	p.T346M	ENST00000341426	NM_023018.4	346	aCg/aTg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115272999	115272999	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	69	476	0	ENST00000438362.2:c.1374del	p.Lys458AsnfsTer21	p.K458Nfs*21	ENST00000438362	NM_001242891.1	458	aaA/aa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681567	117681567	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0089256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	63	371	0	ENST00000368508.3:c.3383T>G	p.Val1128Gly	p.V1128G	ENST00000368508	NM_002944.2	1128	gTt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0021896-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			657	53	417	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711876	89711876	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0021896-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			414	35	302	0	ENST00000371953.3:c.494G>A	p.Gly165Glu	p.G165E	ENST00000371953	NM_000314.4	165	gGa/gAa																																																																															
BTK	695	MSKCC	GRCh37	X	100612539	100612539	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021896-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			534	68	311	0	ENST00000308731.7:c.1135C>T	p.Gln379Ter	p.Q379*	ENST00000308731	NM_000061.2	379	Caa/Taa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900915	3900915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021896-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			639	41	358	0	ENST00000262367.5:c.181C>T	p.Pro61Ser	p.P61S	ENST00000262367	NM_004380.2	61	Cca/Tca																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321390	1321390	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021896-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			536	55	334	0	ENST00000381566.1:c.365C>A	p.Pro122Gln	p.P122Q	ENST00000381566		122	cCg/cAg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361245	66361245	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021896-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			501	61	304	0	ENST00000273854.3:c.927C>A	p.Phe309Leu	p.F309L	ENST00000273854	NM_004439.5	309	ttC/ttA																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115262332	115262332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021896-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			517	57	265	0	ENST00000438362.2:c.2222G>T	p.Ser741Ile	p.S741I	ENST00000438362	NM_001242891.1	741	aGc/aTc																																																																															
NADK	65220	MSKCC	GRCh37	1	1686081	1686081	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs75816936		P-0021896-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			597	69	376	0	ENST00000341426.5:c.745C>T	p.Arg249Trp	p.R249W	ENST00000341426	NM_023018.4	249	Cgg/Tgg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149503918	149503918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021896-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			540	50	326	0	ENST00000261799.4:c.1918G>T	p.Ala640Ser	p.A640S	ENST00000261799	NM_002609.3	640	Gcc/Tcc																																																																															
NF1	4763	MSKCC	GRCh37	17	29559828	29559828	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021896-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			704	59	390	0	ENST00000358273.4:c.3426del	p.Arg1142SerfsTer16	p.R1142Sfs*16	ENST00000358273	NM_001042492.2	1142	aGg/ag																																																																															
EP300	2033	MSKCC	GRCh37	22	41574592	41574592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021896-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			690	87	370	0	ENST00000263253.7:c.6877C>A	p.His2293Asn	p.H2293N	ENST00000263253	NM_001429.3	2293	Cac/Aac																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450389	50450389	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021896-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			591	90	365	0	ENST00000331340.3:c.573C>A	p.His191Gln	p.H191Q	ENST00000331340	NM_006060.4	191	caC/caA																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51507943	51507943	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021896-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			493	83	292	0	ENST00000260433.2:c.815T>A	p.Leu272Gln	p.L272Q	ENST00000260433		272	cTg/cAg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213839	66213839	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021896-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			556	31	311	0	ENST00000273854.3:c.2591A>T	p.Tyr864Phe	p.Y864F	ENST00000273854	NM_004439.5	864	tAt/tTt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117596	70117596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021896-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			707	67	382	0	ENST00000245479.2:c.64C>A	p.Pro22Thr	p.P22T	ENST00000245479	NM_000346.3	22	Ccc/Acc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120512182	120512182	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021896-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			762	69	443	0	ENST00000256646.2:c.1060A>T	p.Ile354Phe	p.I354F	ENST00000256646	NM_024408.3	354	Atc/Ttc																																																																															
MGA	23269	MSKCC	GRCh37	15	41991260	41991260	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0021896-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			472	26	294	0	ENST00000219905.7:c.2093-2A>T		p.X698_splice	ENST00000219905	NM_001164273.1	698																																																																																
FLT4	2324	MSKCC	GRCh37	5	180048851	180048852	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0021896-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			605	32	404	0	ENST00000261937.6:c.1710_1711delinsCT	p.Glu570_Gly571delinsAspCys	p.E570_G571delinsDC	ENST00000261937	NM_182925.4	570	gaGGgc/gaCTgc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157505527	157505527	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021896-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			597	32	314	0	ENST00000346085.5:c.3508G>T	p.Gly1170Trp	p.G1170W	ENST00000346085	NM_020732.3	1170	Ggg/Tgg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683756	162683756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021896-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			483	32	314	0	ENST00000366898.1:c.213G>T	p.Gln71His	p.Q71H	ENST00000366898	NM_004562.2	71	caG/caT																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526721	31526721	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021896-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			601	34	330	0	ENST00000344624.3:c.319A>G	p.Met107Val	p.M107V	ENST00000344624		107	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0085172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	15	514	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061223	38061228	+	inframe_deletion	In_Frame_Del	DEL	TCTCGA	TCTCGA	-			P-0087731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	256	593	0	ENST00000250448.2:c.761_766del	p.Phe254_Asn256delinsTyr	p.F254_N256delinsY	ENST00000250448	NM_004496.3	254	tTCGAGAac/tac																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250437	10250437	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	145	611	0	ENST00000340748.4:c.3815T>C	p.Val1272Ala	p.V1272A	ENST00000340748		1272	gTc/gCc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143326397	143326397	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0087731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	51	418	0	ENST00000262992.4:c.217C>T	p.Gln73Ter	p.Q73*	ENST00000262992	NM_001101669.1	73	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087986-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			97	99	425	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																															
TCF3	6929	MSKCC	GRCh37	19	1611662	1611706	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	CACAGGGCTGAAAGCGGGTGGCTCGTCCCACGGAGGCATACCTTT	CACAGGGCTGAAAGCGGGTGGCTCGTCCCACGGAGGCATACCTTT	-			P-0087986-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			130	45	367	0	ENST00000344749.5:c.1956_*44del		p.*652*	ENST00000344749	NM_001136139.2	652																																																																																
RB1	5925	MSKCC	GRCh37	13	48955421	48955421	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0087986-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	17	353	0	ENST00000267163.4:c.1537T>C	p.Ser513Pro	p.S513P	ENST00000267163	NM_000321.2	513	Tct/Cct																																																																															
MET	4233	MSKCC	GRCh37	7	116411865	116411883	+	intron_variant	Intron	DEL	CCGTCTTTAACAAGCTCTT	CCGTCTTTAACAAGCTCTT	-			P-0087986-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			153	489	607	0	ENST00000397752.3:c.2888-38_2888-20del		p.*963*	ENST00000397752	NM_000245.2																																																																																	
PIK3CG	5294	MSKCC	GRCh37	7	106508247	106508268	+	frameshift_variant	Frame_Shift_Del	DEL	ACCAGCGTGGCGGCGGACTTCT	ACCAGCGTGGCGGCGGACTTCT	-			P-0087986-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			128	98	599	0	ENST00000359195.3:c.245_266del	p.Ser82ThrfsTer69	p.S82Tfs*69	ENST00000359195	NM_002649.2	81	ACCAGCGTGGCGGCGGACTTCTac/ac																																																																															
KDM5A	5927	MSKCC	GRCh37	12	432922	432922	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087986-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			205	120	426	0	ENST00000399788.2:c.1994T>C	p.Val665Ala	p.V665A	ENST00000399788	NM_001042603.1	665	gTg/gCg																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39322555	39322556	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGTCAATGA			P-0087986-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			213	106	469	0	ENST00000373001.3:c.428_436dup	p.Val143_Asp145dup	p.V143_D145dup	ENST00000373001	NM_022157.3	143	gca/gTCATTGACGca																																																																															
STK40	83931	MSKCC	GRCh37	1	36820945	36821176	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGGCAGTCCAGGACGAGGCAGATGCGCTTCTTCATCTTCTTAACCATCCGGCTGGATTCTGTGTCCTCAACGATTTCACAGGTGCGGTCCTGGGAGGCAAGGGGGTAGCGCAGGGCTTGGCTGTGAACTTGGCAGGGCCAAGGCCAGGGCCTGGGACTCTCCTCTGGAGTGGGACACTCAAACCAGTGAGGGAGCCTGGAATTAGCCTGCATGTGCGGGCCAGAGAGGACT	GAGGCAGTCCAGGACGAGGCAGATGCGCTTCTTCATCTTCTTAACCATCCGGCTGGATTCTGTGTCCTCAACGATTTCACAGGTGCGGTCCTGGGAGGCAAGGGGGTAGCGCAGGGCTTGGCTGTGAACTTGGCAGGGCCAAGGCCAGGGCCTGGGACTCTCCTCTGGAGTGGGACACTCAAACCAGTGAGGGAGCCTGGAATTAGCCTGCATGTGCGGGCCAGAGAGGACT	-			P-0087986-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	39	532	0	ENST00000373129.3:c.343-142_432del		p.X115_splice	ENST00000373129	NM_032017.1	115																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10597401	10597401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088347-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			614	57	408	0	ENST00000171111.5:c.1802G>T	p.Arg601Leu	p.R601L	ENST00000171111	NM_203500.1	601	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0088347-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			603	70	370	0	ENST00000269305.4:c.376-2A>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15289926	15289926	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758961316		P-0088347-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			696	72	558	0	ENST00000263388.2:c.3628C>T	p.Arg1210Cys	p.R1210C	ENST00000263388	NM_000435.2	1210	Cgc/Tgc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68939504	68939504	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0088347-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			297	22	329	0	ENST00000288368.4:c.489A>T	p.Glu163Asp	p.E163D	ENST00000288368	NM_024870.2	163	gaA/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0089198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			261	167	537	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123164976	123164976	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0089198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	101	433	0	ENST00000218089.9:c.288+1G>T		p.X96_splice	ENST00000218089	NM_001042749.1	96																																																																																
INHBA	3624	MSKCC	GRCh37	7	41730074	41730074	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377167564		P-0089204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	136	449	0	ENST00000242208.4:c.455G>A	p.Arg152His	p.R152H	ENST00000242208	NM_002192.2	152	cGt/cAt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696434	47696434	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0089204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	102	348	0	ENST00000347630.2:c.389A>T	p.Asp130Val	p.D130V	ENST00000347630	NM_001007230.1	130	gAc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0089247-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			70	357	479	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0089247-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	309	494	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0089247-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	187	253	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0089247-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	278	513	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
CBL	867	MSKCC	GRCh37	11	119170354	119170354	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507498		P-0089247-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	362	640	2	ENST00000264033.4:c.2584G>A	p.Glu862Lys	p.E862K	ENST00000264033	NM_005188.3	862	Gag/Aag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593405	48593405	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0089247-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			44	311	406	3	ENST00000342988.3:c.1156G>C	p.Gly386Arg	p.G386R	ENST00000342988	NM_005359.5	386	Ggt/Cgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0089247-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	255	323	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242800934	242800934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089247-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	77	552	0	ENST00000334409.5:c.57G>T	p.Trp19Cys	p.W19C	ENST00000334409	NM_005018.2	19	tgG/tgT																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216980	7216980	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0089248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			699	82	587	0	ENST00000380728.2:c.541C>T	p.Gln181Ter	p.Q181*	ENST00000380728		181	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0089248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	54	349	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ATM	472	MSKCC	GRCh37	11	108218041	108218041	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0089248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	27	443	0	ENST00000278616.4:c.8620C>T	p.Gln2874Ter	p.Q2874*	ENST00000278616	NM_000051.3	2874	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604703	48604703	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	75	579	0	ENST00000342988.3:c.1525T>G	p.Trp509Gly	p.W509G	ENST00000342988	NM_005359.5	509	Tgg/Ggg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509113	66509113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	16	342	0	ENST00000273854.3:c.214G>A	p.Asp72Asn	p.D72N	ENST00000273854	NM_004439.5	72	Gac/Aac																																																																															
REST	5978	MSKCC	GRCh37	4	57785958	57785958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	25	311	0	ENST00000309042.7:c.904C>T	p.Arg302Cys	p.R302C	ENST00000309042	NM_005612.4	302	Cgc/Tgc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117684025	117684025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	26	443	0	ENST00000368508.3:c.3122C>T	p.Pro1041Leu	p.P1041L	ENST00000368508	NM_002944.2	1041	cCa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579378	7579378	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	377	539	0	ENST00000269305.4:c.309C>A	p.Tyr103Ter	p.Y103*	ENST00000269305	NM_001126112.2	103	taC/taA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0089265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	42	251	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0089265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	24	358	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0089265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	148	517	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
KLF5	688	MSKCC	GRCh37	13	73636647	73636647	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0089265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1036	294	654	0	ENST00000377687.4:c.910C>G	p.Pro304Ala	p.P304A	ENST00000377687	NM_001730.3	304	Cca/Gca																																																																															
CUL3	8452	MSKCC	GRCh37	2	225370754	225370754	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0089265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	24	419	0	ENST00000264414.4:c.1125G>C	p.Glu375Asp	p.E375D	ENST00000264414	NM_003590.4	375	gaG/gaC																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047632	180047632	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	124	448	0	ENST00000261937.6:c.2383C>A	p.Leu795Ile	p.L795I	ENST00000261937	NM_182925.4	795	Ctc/Atc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066636	94066637	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	A			P-0089265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			958	59	521	0	ENST00000369303.4:c.1122_1123delinsT	p.Trp374CysfsTer22	p.W374Cfs*22	ENST00000369303	NM_004440.3	374	tgGGag/tgTag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401437	139402459	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTTTCGTCAGTGGCCCAAGCCCGCCACACCCCGGCCCTGCCGTGCCGCGTGTCCGTCCCGGAAGACGAGCGCTCAGGTCTGGGGCTGCACGGACACTCGGGAGAGGCAGGTGTCAAGGGTGCCGTGGAGACGCCCTTCCCACTGGGACCCCCGCTCTGGGCCCTTTCCCTGGGCAGCTGTGAGTCGGCCTTGGCCTCACACAGGAAAATGGGAGTTTCTGGCTGGTTCCTGGATGCCTCTGGCCGGTCCCGGGGTGCCTGCCCTGCCCCTGCCCTGGCCATGGATGGCCAACACCAGCCCTCCGTGCAGCGGCCCTTACCCTGAGTGCCCCGTGGGCAGGAGCACTTGTAGGTGTTGGGGAGGTCGAGGCAGGTGCCCCCGTTCTGGCAGGGGTGGGAGAGGCACTCGTCGATCTCCTCAGAGCAGTTCACCCCGTGGTAGCCGGCCACGCACTGTGCAGGCGACAGAACGAGGGGCCCTTCGGCTCAGCCGGCGCCAGGATGCAGTGCTCCCACACCCCACTGTGAGGGCTGACAGGGCCACATGAGCTGCCCTCAGGTCCAGCGAAGCCACGGGCCCCTCGCTCCTGTCAGACCTGGAGAGAGACCCAGCCCAACAGACCCTGGCGGGGCCTCGGTGACCGGAGTCACTGCCTGTTGGGGGTGGGTGGACCCCGTCCCATAGGATAGAGGTGAGGGCCTCAGGGTAGGTGTTGGCCAAGCCCAGACACAATCTAGGGGAAGGGAAAACCCCATCCCACTTCTCAGTATAGGTACCCTCCTTCAGGCTTTCCACAGGCCACCTCTTCCAGGCAGTCTACCCTGATTACCCCAGCCCTCCCCTAATGAGACTGAACAGTGCATGGGCCTATCAGGTTCAGTTTTCTCCACTGGGCCAGCTCCCAGCCAGGGCCTGGTGTGTGGCAACACTCGTGCCGGCCACAACCCTTACCCTAGGAGGGACCCCCACCTTGCAGGAGTAGCCGCCCAGGTAGTCCGTGCAGGTGGCCCCGTTCTGGCAGG	GGTTTCGTCAGTGGCCCAAGCCCGCCACACCCCGGCCCTGCCGTGCCGCGTGTCCGTCCCGGAAGACGAGCGCTCAGGTCTGGGGCTGCACGGACACTCGGGAGAGGCAGGTGTCAAGGGTGCCGTGGAGACGCCCTTCCCACTGGGACCCCCGCTCTGGGCCCTTTCCCTGGGCAGCTGTGAGTCGGCCTTGGCCTCACACAGGAAAATGGGAGTTTCTGGCTGGTTCCTGGATGCCTCTGGCCGGTCCCGGGGTGCCTGCCCTGCCCCTGCCCTGGCCATGGATGGCCAACACCAGCCCTCCGTGCAGCGGCCCTTACCCTGAGTGCCCCGTGGGCAGGAGCACTTGTAGGTGTTGGGGAGGTCGAGGCAGGTGCCCCCGTTCTGGCAGGGGTGGGAGAGGCACTCGTCGATCTCCTCAGAGCAGTTCACCCCGTGGTAGCCGGCCACGCACTGTGCAGGCGACAGAACGAGGGGCCCTTCGGCTCAGCCGGCGCCAGGATGCAGTGCTCCCACACCCCACTGTGAGGGCTGACAGGGCCACATGAGCTGCCCTCAGGTCCAGCGAAGCCACGGGCCCCTCGCTCCTGTCAGACCTGGAGAGAGACCCAGCCCAACAGACCCTGGCGGGGCCTCGGTGACCGGAGTCACTGCCTGTTGGGGGTGGGTGGACCCCGTCCCATAGGATAGAGGTGAGGGCCTCAGGGTAGGTGTTGGCCAAGCCCAGACACAATCTAGGGGAAGGGAAAACCCCATCCCACTTCTCAGTATAGGTACCCTCCTTCAGGCTTTCCACAGGCCACCTCTTCCAGGCAGTCTACCCTGATTACCCCAGCCCTCCCCTAATGAGACTGAACAGTGCATGGGCCTATCAGGTTCAGTTTTCTCCACTGGGCCAGCTCCCAGCCAGGGCCTGGTGTGTGGCAACACTCGTGCCGGCCACAACCCTTACCCTAGGAGGGACCCCCACCTTGCAGGAGTAGCCGCCCAGGTAGTCCGTGCAGGTGGCCCCGTTCTGGCAGG	-			P-0089265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	41	457	0	ENST00000277541.6:c.3458_3644-12del		p.X1153_splice	ENST00000277541	NM_017617.3	1153																																																																																
RBM10	8241	MSKCC	GRCh37	X	47032567	47032567	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0089265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	56	249	0	ENST00000329236.7:c.242A>T	p.Glu81Val	p.E81V	ENST00000329236	NM_001204466.1	81	gAg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778720		P-0086458-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			600	27	391	0	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061249	38061250	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			P-0089074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	58	333	0	ENST00000250448.2:c.737_739dup	p.Leu246dup	p.L246dup	ENST00000250448	NM_004496.3	246	cac/cTGCac																																																																															
CDH1	999	MSKCC	GRCh37	16	68842715	68842716	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0089078-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	22	331	0	ENST00000261769.5:c.653_654del	p.Glu218AlafsTer4	p.E218Afs*4	ENST00000261769	NM_004360.3	217	acAGag/acag																																																																															
IRF4	3662	MSKCC	GRCh37	6	394846	394846	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0089078-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	36	308	0	ENST00000380956.4:c.242T>C	p.Phe81Ser	p.F81S	ENST00000380956	NM_001195286.1	81	tTc/tCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057520005		P-0089079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	100	346	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																															
CALR	811	MSKCC	GRCh37	19	13054625	13054625	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0089079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			748	106	455	0	ENST00000316448.5:c.1152C>G	p.Asp384Glu	p.D384E	ENST00000316448	NM_004343.3	384	gaC/gaG																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519920		P-0089079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	121	279	0	ENST00000397062.3:c.85G>T	p.Asp29Tyr	p.D29Y	ENST00000397062	NM_006164.4	29	Gat/Tat																																																																															
TP63	8626	MSKCC	GRCh37	3	189607261	189607261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1248	142	449	0	ENST00000264731.3:c.1640G>A	p.Cys547Tyr	p.C547Y	ENST00000264731	NM_003722.4	547	tGc/tAc																																																																															
RET	5979	MSKCC	GRCh37	10	43608372	43608372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	160	564	0	ENST00000355710.3:c.1720G>A	p.Glu574Lys	p.E574K	ENST00000355710	NM_020975.4	574	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717735	89717735	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0089079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	84	235	0	ENST00000371953.3:c.760A>T	p.Lys254Ter	p.K254*	ENST00000371953	NM_000314.4	254	Aaa/Taa																																																																															
CTR9	9646	MSKCC	GRCh37	11	10795583	10795583	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0089079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	113	334	0	ENST00000361367.2:c.2752G>C	p.Asp918His	p.D918H	ENST00000361367	NM_014633.3	918	Gat/Cat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420102	49420102	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0089079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	109	430	0	ENST00000301067.7:c.15647A>G	p.Tyr5216Cys	p.Y5216C	ENST00000301067	NM_003482.3	5216	tAt/tGt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32931914	32931917	+	frameshift_variant	Frame_Shift_Del	DEL	AATT	AATT	-			P-0089079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	97	280	0	ENST00000380152.3:c.7655_7658del	p.Ile2552ThrfsTer95	p.I2552Tfs*95	ENST00000380152		2551	aaAATT/aa																																																																															
RB1	5925	MSKCC	GRCh37	13	48947583	48947583	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0089079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	74	252	0	ENST00000267163.4:c.1171del	p.Ser391GlnfsTer10	p.S391Qfs*10	ENST00000267163	NM_000321.2	390	aaT/aa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	338152	338152	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0089079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	117	434	0	ENST00000262320.3:c.2559G>C	p.Lys853Asn	p.K853N	ENST00000262320	NM_003502.3	853	aaG/aaC																																																																															
AXIN1	8312	MSKCC	GRCh37	16	339561	339561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	83	324	0	ENST00000262320.3:c.2341G>A	p.Asp781Asn	p.D781N	ENST00000262320	NM_003502.3	781	Gac/Aac																																																																															
AXIN1	8312	MSKCC	GRCh37	16	339595	339595	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0089079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	67	268	0	ENST00000262320.3:c.2307G>C	p.Gln769His	p.Q769H	ENST00000262320	NM_003502.3	769	caG/caC																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73046203	73046214	+	inframe_deletion	In_Frame_Del	DEL	GCTCCAGGAGGC	GCTCCAGGAGGC	-			P-0089079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	57	228	0	ENST00000356692.5:c.18_29del	p.Gln7_Leu10del	p.Q7_L10del	ENST00000356692		5	agGCTCCAGGAGGCg/agg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541384	187541384	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	114	434	0	ENST00000441802.2:c.6356A>C	p.Tyr2119Ser	p.Y2119S	ENST00000441802	NM_005245.3	2119	tAc/tCc																																																																															
LYN	4067	MSKCC	GRCh37	8	56922538	56922538	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0089079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	109	357	0	ENST00000519728.1:c.1408G>C	p.Asp470His	p.D470H	ENST00000519728	NM_002350.3	470	Gat/Cat																																																																															
STAG2	10735	MSKCC	GRCh37	X	123196969	123196969	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0089079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	73	275	0	ENST00000218089.9:c.1735T>A	p.Ser579Thr	p.S579T	ENST00000218089	NM_001042749.1	579	Tct/Act																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044873	47044873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	118	486	0	ENST00000329236.7:c.1965C>A	p.Ser655Arg	p.S655R	ENST00000329236	NM_001204466.1	655	agC/agA																																																																															
MED12	9968	MSKCC	GRCh37	X	70340884	70340884	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	89	367	0	ENST00000374080.3:c.617G>T	p.Arg206Leu	p.R206L	ENST00000374080		206	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	11	273	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	105	421	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099871	157099872	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCG	rs776819042		P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	51	262	0	ENST00000346085.5:c.821_823dup	p.Ala274dup	p.A274dup	ENST00000346085	NM_020732.3	274	tcc/tCCGcc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	51	337	0	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs750808726		P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	37	380	1	ENST00000261937.6:c.1267dup	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	31	118	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
CASP8	841	MSKCC	GRCh37	2	202149728	202149728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	72	416	0	ENST00000358485.4:c.1173del	p.Ile392SerfsTer4	p.I392Sfs*4	ENST00000358485	NM_001080125.1	390	gCc/gc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	90	370	0	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	154	392	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	55	349	0	ENST00000331920.6:c.3921del	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			81	23	342	3	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
ARAF	369	MSKCC	GRCh37	X	47422384	47422384	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	40	286	0	ENST00000377045.4:c.23del	p.Pro8LeufsTer26	p.P8Lfs*26	ENST00000377045	NM_001654.4	6	ggC/gg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	38	300	3	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135785964	135785964	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs118203506		P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	105	312	0	ENST00000298552.3:c.1257del	p.Arg420GlyfsTer20	p.R420Gfs*20	ENST00000298552	NM_001162426.1	419	ccC/cc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396792	396792	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	97	375	0	ENST00000262320.3:c.234del	p.Thr79ProfsTer5	p.T79Pfs*5	ENST00000262320	NM_003502.3	78	ccC/cc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030692	48030692	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	21	360	0	ENST00000234420.5:c.3312del	p.Phe1104LeufsTer11	p.F1104Lfs*11	ENST00000234420	NM_000179.2	1102	acT/ac																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	105	321	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686901	37686901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	74	255	0	ENST00000447079.4:c.3810del	p.Gly1271AspfsTer23	p.G1271Dfs*23	ENST00000447079	NM_015083.1	1269	Ccc/cc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139818342	139818342	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs972932325		P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	72	222	0	ENST00000247668.2:c.1177C>T	p.Arg393Cys	p.R393C	ENST00000247668	NM_021138.3	393	Cgt/Tgt																																																																															
SUFU	51684	MSKCC	GRCh37	10	104263974	104263974	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	68	226	3	ENST00000369902.3:c.71del	p.Pro24ArgfsTer72	p.P24Rfs*72	ENST00000369902	NM_016169.3	22	gCc/gc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935322	36935323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs747437399		P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	69	336	1	ENST00000361632.4:c.1404dup	p.Ser469GlnfsTer5	p.S469Qfs*5	ENST00000361632		468	-/C																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942053	71942053	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	63	405	0	ENST00000298229.2:c.1322del	p.Asn441ThrfsTer2	p.N441Tfs*2	ENST00000298229	NM_001567.3	439	ccA/cc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7982767	7982767	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	87	317	0	ENST00000319144.4:c.1018del	p.Leu340SerfsTer12	p.L340Sfs*12	ENST00000319144	NM_001139.2	340	Ctc/tc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	89	349	3	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	66	379	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
CCND3	896	MSKCC	GRCh37	6	41903746	41903746	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	104	360	1	ENST00000372991.4:c.811del	p.Arg271GlyfsTer33	p.R271Gfs*33	ENST00000372991	NM_001760.3	271	Cgg/gg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466420	120466420	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs552225415		P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	78	343	0	ENST00000256646.2:c.4699C>T	p.Arg1567Trp	p.R1567W	ENST00000256646	NM_024408.3	1567	Cgg/Tgg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31521250	31521250	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			44	11	267	0	ENST00000344624.3:c.927del	p.Glu310SerfsTer42	p.E310Sfs*42	ENST00000344624		309	aaA/aa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535316	66535316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	45	269	0	ENST00000273854.3:c.145G>A	p.Ala49Thr	p.A49T	ENST00000273854	NM_004439.5	49	Gca/Aca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435456	56435456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756000629		P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	84	364	1	ENST00000407977.2:c.1681C>T	p.Arg561Trp	p.R561W	ENST00000407977		561	Cgg/Tgg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753567	42753567	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	98	395	0	ENST00000222329.4:c.697C>T	p.Arg233Ter	p.R233*	ENST00000222329	NM_006494.2	233	Cga/Tga																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502612	149502612	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	67	308	0	ENST00000261799.4:c.2176del	p.Leu726CysfsTer7	p.L726Cfs*7	ENST00000261799	NM_002609.3	726	Ctg/tg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438317	110438325	+	inframe_deletion	In_Frame_Del	DEL	GTTGTTGTT	GTTGTTGTT	-	rs1200012987		P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	23	206	0	ENST00000375856.3:c.76_84del	p.Asn26_Asn28del	p.N26_N28del	ENST00000375856	NM_003749.2	26	AACAACAAC/-																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980558	1980559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	46	368	0	ENST00000382895.3:c.4027_4028dup	p.Glu1344GlnfsTer49	p.E1344Qfs*49	ENST00000382895	NM_133330.2	1340	-/CC																																																																															
CIC	23152	MSKCC	GRCh37	19	42793484	42793484	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780297917		P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	92	328	0	ENST00000575354.2:c.1286C>T	p.Ala429Val	p.A429V	ENST00000575354	NM_015125.3	429	gCg/gTg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712793	43712793	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770333392		P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	76	351	0	ENST00000382044.4:c.4391G>A	p.Arg1464His	p.R1464H	ENST00000382044	NM_001141980.1	1464	cGt/cAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347173	89347173	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778991139		P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	99	358	0	ENST00000301030.4:c.5777C>T	p.Pro1926Leu	p.P1926L	ENST00000301030	NM_001256183.1	1926	cCg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229429	36229429	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1356978354		P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	81	332	0	ENST00000222270.7:c.8119G>A	p.Ala2707Thr	p.A2707T	ENST00000222270	NM_014727.1	2707	Gcc/Acc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114155	115114157	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs771239166		P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	62	347	0	ENST00000257566.3:c.1060_1062del	p.Ser354del	p.S354del	ENST00000257566	NM_016569.3	354	TCT/-																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244190	5244190	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760369713		P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	75	337	0	ENST00000357368.4:c.1292G>A	p.Arg431Gln	p.R431Q	ENST00000357368	NM_002850.3	431	cGg/cAg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258735	16258735	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	51	416	0	ENST00000375759.3:c.6005del	p.Asn2002MetfsTer20	p.N2002Mfs*20	ENST00000375759	NM_015001.2	2000	ggA/gg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228594	36228594	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	86	362	0	ENST00000222270.7:c.7612del	p.Ala2538ProfsTer76	p.A2538Pfs*76	ENST00000222270	NM_014727.1	2536	gaG/ga																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348180	348180	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	81	389	0	ENST00000262320.3:c.1326del	p.Ala443LeufsTer37	p.A443Lfs*37	ENST00000262320	NM_003502.3	442	ccC/cc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296357	15296358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	84	380	0	ENST00000263388.2:c.2084dup	p.Ser696GlufsTer7	p.S696Efs*7	ENST00000263388	NM_000435.2	695	ccg/ccCg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324464	31324464	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1168937188		P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	97	238	0	ENST00000412585.2:c.343+1G>A		p.X115_splice	ENST00000412585	NM_005514.6	115																																																																																
FOXO1	2308	MSKCC	GRCh37	13	41240035	41240035	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1238982941		P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	16	121	0	ENST00000379561.5:c.315del	p.Leu106CysfsTer227	p.L106Cfs*227	ENST00000379561	NM_002015.3	105	ggG/gg																																																																															
ERG	2078	MSKCC	GRCh37	21	39764346	39764347	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	56	306	0	ENST00000288319.7:c.765dup	p.Arg256GlnfsTer29	p.R256Qfs*29	ENST00000288319	NM_182918.3	255	-/C																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799219	88799219	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	38	307	0	ENST00000360948.2:c.166del	p.Leu56SerfsTer30	p.L56Sfs*30	ENST00000360948	NM_001012338.2	56	Ctc/tc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639978	3639978	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	79	353	0	ENST00000294008.3:c.3661del	p.Ala1221ArgfsTer67	p.A1221Rfs*67	ENST00000294008	NM_032444.2	1221	Gcg/cg																																																																															
POLE	5426	MSKCC	GRCh37	12	133249224	133249224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	69	296	0	ENST00000320574.5:c.1675C>T	p.Arg559Trp	p.R559W	ENST00000320574	NM_006231.2	559	Cgg/Tgg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605176	46605176	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	67	311	0	ENST00000263734.3:c.1393C>A	p.Pro465Thr	p.P465T	ENST00000263734	NM_001430.4	465	Ccg/Acg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112915534	112915534	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			28	18	264	0	ENST00000351677.2:c.933G>A	p.Met311Ile	p.M311I	ENST00000351677	NM_002834.3	311	atG/atA																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2491364	2491364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	95	375	0	ENST00000355716.4:c.407C>T	p.Ala136Val	p.A136V	ENST00000355716	NM_003820.2	136	gCc/gTc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149436927	149436927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	61	348	0	ENST00000286301.3:c.2242C>T	p.Arg748Trp	p.R748W	ENST00000286301	NM_005211.3	748	Cgg/Tgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628613	187628613	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	40	402	0	ENST00000441802.2:c.2369T>A	p.Leu790Gln	p.L790Q	ENST00000441802	NM_005245.3	790	cTg/cAg																																																																															
GNB1	2782	MSKCC	GRCh37	1	1756870	1756870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	32	228	0	ENST00000378609.4:c.23G>A	p.Arg8Gln	p.R8Q	ENST00000378609	NM_002074.3	8	cGg/cAg																																																																															
ALK	238	MSKCC	GRCh37	2	29462628	29462628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	51	322	0	ENST00000389048.3:c.2273C>A	p.Ser758Tyr	p.S758Y	ENST00000389048	NM_004304.4	758	tCt/tAt																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47599301	47599301	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	87	317	0	ENST00000395288.2:c.251G>T	p.Arg84Leu	p.R84L	ENST00000395288	NM_016506.5	84	cGg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730777	40730777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	27	326	0	ENST00000373198.4:c.3758C>T	p.Ala1253Val	p.A1253V	ENST00000373198	NM_133170.3	1253	gCa/gTa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680760	88680760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	37	265	0	ENST00000360948.2:c.497G>A	p.Cys166Tyr	p.C166Y	ENST00000360948	NM_001012338.2	166	tGt/tAt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615684	1615684	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	63	387	0	ENST00000344749.5:c.1586+1del		p.X529_splice	ENST00000344749	NM_001136139.2	529																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36213561	36213561	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	33	373	0	ENST00000222270.7:c.2663A>C	p.Glu888Ala	p.E888A	ENST00000222270	NM_014727.1	888	gAa/gCa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779142	3779142	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	71	314	0	ENST00000262367.5:c.5906A>G	p.Gln1969Arg	p.Q1969R	ENST00000262367	NM_004380.2	1969	cAg/cGg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221277	36221278	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	80	372	1	ENST00000222270.7:c.5112_5113dup	p.Arg1705ProfsTer17	p.R1705Pfs*17	ENST00000222270	NM_014727.1	1704	cgc/cgCCc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135776977	135776977	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	34	219	0	ENST00000298552.3:c.2501A>G	p.Lys834Arg	p.K834R	ENST00000298552	NM_001162426.1	834	aAg/aGg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873686	151873686	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	65	401	0	ENST00000262189.6:c.8852T>C	p.Val2951Ala	p.V2951A	ENST00000262189	NM_170606.2	2951	gTg/gCg																																																																															
EP300	2033	MSKCC	GRCh37	22	41536262	41536262	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			54	12	241	0	ENST00000263253.7:c.1878+1G>C		p.X626_splice	ENST00000263253	NM_001429.3	626																																																																																
RAD51B	5890	MSKCC	GRCh37	14	68331834	68331834	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			32	10	226	0	ENST00000487270.1:c.430G>T	p.Glu144Ter	p.E144*	ENST00000487270	NM_133509.3	144	Gag/Tag																																																																															
TEK	7010	MSKCC	GRCh37	9	27206760	27206760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	18	308	0	ENST00000380036.4:c.2545C>T	p.Arg849Trp	p.R849W	ENST00000380036	NM_000459.3	849	Cgg/Tgg																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544464	86544464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	64	311	0	ENST00000262426.4:c.289C>T	p.Arg97Cys	p.R97C	ENST00000262426	NM_001451.2	97	Cgc/Tgc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056549	26056573	+	protein_altering_variant	In_Frame_Del	DEL	AGACGCCTTACGAGGCGTACCCCCA	AGACGCCTTACGAGGCGTACCCCCA	GGAC			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	99	314	0	ENST00000343677.2:c.84_108delinsGTCC	p.Gly29_Ala35del	p.G29_A35del	ENST00000343677	NM_005319.3	28	gcTGGGGGTACGCCTCGTAAGGCGTCT/gcGTCC																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910759	29910766	+	frameshift_variant	Frame_Shift_Del	DEL	TGGACCTG	TGGACCTG	CGAACCT			P-0089080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	56	126	0	ENST00000376809.5:c.299_306delinsCGAACCT	p.Val100AlafsTer22	p.V100Afs*22	ENST00000376809	NM_002116.7	100	gTGGACCTG/gCGAACCT																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0089339-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	102	467	0	ENST00000206249.3:c.1607T>A	p.Leu536His	p.L536H	ENST00000206249	NM_000125.3	536	cTc/cAc																																																																															
MPL	4352	MSKCC	GRCh37	1	43812543	43812544	+	missense_variant	Missense_Mutation	DNP	TG	TG	AA			P-0089339-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	87	465	0	ENST00000372470.3:c.1246_1247delinsAA	p.Trp416Lys	p.W416K	ENST00000372470	NM_005373.2	416	TGg/AAg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097719	8097719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089339-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	135	495	0	ENST00000346208.3:c.101C>T	p.Ser34Phe	p.S34F	ENST00000346208		34	tCc/tTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0087347-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			547	140	250	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0087347-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			568	195	357	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983135	201983135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087347-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			597	163	361	0	ENST00000359651.3:c.984G>T	p.Lys328Asn	p.K328N	ENST00000359651		328	aaG/aaT																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31504673	31504673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087347-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			559	77	349	0	ENST00000344624.3:c.1657C>A	p.Pro553Thr	p.P553T	ENST00000344624		553	Cct/Act																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11172459	11172459	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0087347-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			427	108	269	0	ENST00000344626.4:c.4912-1G>T		p.X1638_splice	ENST00000344626	NM_003072.3	1638																																																																																
FLT1	2321	MSKCC	GRCh37	13	28893576	28893577	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0087347-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			454	28	231	1	ENST00000282397.4:c.3269_3270delinsTT	p.Trp1090Phe	p.W1090F	ENST00000282397	NM_002019.4	1090	tGG/tTT																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185161405	185161405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			135	10	337	0	ENST00000265026.3:c.832C>T	p.Arg278Cys	p.R278C	ENST00000265026	NM_004721.4	278	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100208	27100208	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs756511649		P-0088341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	10	544	0	ENST00000324856.7:c.4004G>A	p.Arg1335Gln	p.R1335Q	ENST00000324856	NM_006015.4	1335	cGa/cAa																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913500		P-0089055-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	33	455	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0089055-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	23	345	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41222964	41222964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089055-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	66	531	0	ENST00000357654.3:c.4967G>T	p.Gly1656Val	p.G1656V	ENST00000357654	NM_007294.3	1656	gGc/gTc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821074	32821074	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0089055-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			702	37	484	0	ENST00000354258.4:c.520C>T	p.Arg174Ter	p.R174*	ENST00000354258	NM_000593.5	174	Cga/Tga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044604	47044604	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0089055-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	21	311	0	ENST00000329236.7:c.1866+1G>T		p.X622_splice	ENST00000329236	NM_001204466.1	622																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0089060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	103	305	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KLF5	688	MSKCC	GRCh37	13	73636638	73636638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	876	607	3	ENST00000377687.4:c.901C>T	p.Pro301Ser	p.P301S	ENST00000377687	NM_001730.3	301	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786202962		P-0089060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	268	560	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112174348	112174348	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0089060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	110	451	0	ENST00000257430.4:c.3057del	p.Glu1020AsnfsTer2	p.E1020Nfs*2	ENST00000257430	NM_000038.5	1019	ggA/gg																																																																															
SYK	6850	MSKCC	GRCh37	9	93626935	93626935	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0089060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	116	310	0	ENST00000375746.1:c.782A>G	p.Lys261Arg	p.K261R	ENST00000375746	NM_001174167.1	261	aAa/aGa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965547	93965547	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0089060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	23	343	0	ENST00000369303.4:c.2381C>T	p.Thr794Ile	p.T794I	ENST00000369303	NM_004440.3	794	aCt/aTt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519972		P-0089061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	150	267	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																															
AR	367	MSKCC	GRCh37	X	66931247	66931247	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868669253		P-0089061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	31	119	0	ENST00000374690.3:c.1889G>A	p.Arg630Gln	p.R630Q	ENST00000374690	NM_000044.3	630	cGg/cAg																																																																															
AR	367	MSKCC	GRCh37	X	66931246	66931246	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1085307962		P-0089061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	15	123	0	ENST00000374690.3:c.1888C>T	p.Arg630Trp	p.R630W	ENST00000374690	NM_000044.3	630	Cgg/Tgg																																																																															
MGA	23269	MSKCC	GRCh37	15	42005463	42005463	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0089061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	161	378	0	ENST00000219905.7:c.3199C>T	p.Gln1067Ter	p.Q1067*	ENST00000219905	NM_001164273.1	1067	Caa/Taa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98220484	98220484	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	25	312	0	ENST00000331920.6:c.2979A>C	p.Lys993Asn	p.K993N	ENST00000331920	NM_000264.3	993	aaA/aaC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878396	151878397	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0089061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	283	364	0	ENST00000262189.6:c.6548_6549del	p.Pro2183LeufsTer5	p.P2183Lfs*5	ENST00000262189	NM_170606.2	2183	cCA/c																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111921719	111921719	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0089061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	114	207	0	ENST00000393256.3:c.509del	p.Asn170IlefsTer72	p.N170Ifs*72	ENST00000393256	NM_006538.4	170	Aat/at																																																																															
NF1	4763	MSKCC	GRCh37	17	29422389	29422389	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0089061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	15	176	0	ENST00000358273.4:c.60+2T>C		p.X20_splice	ENST00000358273	NM_001042492.2	20																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0089062-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	112	263	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
MED12	9968	MSKCC	GRCh37	X	70342074	70342074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089062-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	122	414	0	ENST00000374080.3:c.1126G>T	p.Ala376Ser	p.A376S	ENST00000374080		376	Gcc/Tcc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0089119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	119	408	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0042245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			258	62	422	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519991		P-0042245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			458	127	653	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463519	25463519	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	128	633	0	ENST00000264709.3:c.2163G>T	p.Lys721Asn	p.K721N	ENST00000264709	NM_175629.2	721	aaG/aaT																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673281	30673281	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			647	138	644	1	ENST00000376406.3:c.3679G>T	p.Ala1227Ser	p.A1227S	ENST00000376406	NM_014641.2	1227	Gct/Tct																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53231062	53231063	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0042245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			446	90	549	0	ENST00000375401.3:c.1839_1840delinsTT	p.Glu613_Ala614delinsAspSer	p.E613_A614delinsDS	ENST00000375401	NM_004187.3	613	gaGGct/gaTTct																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949323	71949323	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			528	148	637	0	ENST00000298229.2:c.3703G>T	p.Asp1235Tyr	p.D1235Y	ENST00000298229	NM_001567.3	1235	Gac/Tac																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637337	176637337	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			515	233	590	1	ENST00000439151.2:c.1937G>T	p.Ser646Ile	p.S646I	ENST00000439151	NM_022455.4	646	aGc/aTc																																																																															
RB1	5925	MSKCC	GRCh37	13	48955571	48955571	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086787-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1	135	326	0	ENST00000267163.4:c.1687T>A	p.Trp563Arg	p.W563R	ENST00000267163	NM_000321.2	563	Tgg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0086787-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			2	337	520	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
BRAF	673	MSKCC	GRCh37	7	140439727	140439727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086787-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			148	116	254	0	ENST00000288602.6:c.2012G>A	p.Arg671Gln	p.R671Q	ENST00000288602	NM_004333.4	671	cGa/cAa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226351	2226352	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0086787-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	148	562	1	ENST00000326181.6:c.1964_1965delinsTT	p.Arg655Leu	p.R655L	ENST00000326181	NM_032271.2	655	cGA/cTT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630970	187630970	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0086787-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			138	97	459	0	ENST00000441802.2:c.12T>A	p.His4Gln	p.H4Q	ENST00000441802	NM_005245.3	4	caT/caA																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563311	21563311	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77919685		P-0088951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	77	473	0	ENST00000382592.4:c.608C>T	p.Ala203Val	p.A203V	ENST00000382592	NM_014572.2	203	gCg/gTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0088951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	77	235	0	ENST00000329236.7:c.1459+1G>T		p.X487_splice	ENST00000329236	NM_001204466.1	487																																																																																
APC	324	MSKCC	GRCh37	5	112151197	112151197	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0088951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	50	259	0	ENST00000257430.4:c.841del	p.Thr281LeufsTer12	p.T281Lfs*12	ENST00000257430	NM_000038.5	280	tcA/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0088951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	40	216	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372344	55372344	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0088951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	55	497	0	ENST00000297316.4:c.1034G>C	p.Gly345Ala	p.G345A	ENST00000297316	NM_022454.3	345	gGc/gCc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184111	56184111	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0088951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	65	353	0	ENST00000399503.3:c.4316T>A	p.Ile1439Asn	p.I1439N	ENST00000399503	NM_005921.1	1439	aTt/aAt																																																																															
JUN	3725	MSKCC	GRCh37	1	59248053	59248054	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0088951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	103	437	0	ENST00000371222.2:c.689dup	p.Thr231AspfsTer79	p.T231Dfs*79	ENST00000371222	NM_002228.3	230	cag/caAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0088952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	20	383	0	ENST00000269305.4:c.673-1G>C		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0088955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	15	352	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458435	120458436	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs771237928		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	65	490	0	ENST00000256646.2:c.6909dup	p.Ile2304HisfsTer9	p.I2304Hfs*9	ENST00000256646	NM_024408.3	2303	-/C																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120460319	120460319	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1446995271		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	39	357	0	ENST00000256646.2:c.5996del	p.Asn1999MetfsTer32	p.N1999Mfs*32	ENST00000256646	NM_024408.3	1999	aAt/at																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056211	27056211	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs878853088		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	55	447	0	ENST00000324856.7:c.1207C>T	p.Gln403Ter	p.Q403*	ENST00000324856	NM_006015.4	403	Cag/Tag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	48	386	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	41	384	0	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	47	261	0	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118390453	118390453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	100	370	0	ENST00000534358.1:c.11267C>T	p.Ala3756Val	p.A3756V	ENST00000534358	NM_005933.3	3756	gCc/gTc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	96	420	1	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431722	49431722	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	69	421	0	ENST00000301067.7:c.9417del	p.Lys3140ArgfsTer2	p.K3140Rfs*2	ENST00000301067	NM_003482.3	3139	ccC/cc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487322	56487322	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775042280		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	55	303	0	ENST00000267101.3:c.1468C>T	p.Arg490Cys	p.R490C	ENST00000267101	NM_001982.3	490	Cgc/Tgc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	74	289	3	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562285	21562285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749940600		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	63	398	0	ENST00000382592.4:c.1634G>A	p.Arg545His	p.R545H	ENST00000382592	NM_014572.2	545	cGt/cAt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28919595	28919595	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs553261958		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	93	282	0	ENST00000282397.4:c.2342G>A	p.Arg781Gln	p.R781Q	ENST00000282397	NM_002019.4	781	cGa/cAa																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	82	363	1	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2131787	2131787	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1020561347		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	93	393	0	ENST00000219476.3:c.3802C>T	p.Arg1268Cys	p.R1268C	ENST00000219476	NM_000548.3	1268	Cgc/Tgc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639380	3639380	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	113	411	0	ENST00000294008.3:c.4259del	p.Pro1420GlnfsTer30	p.P1420Qfs*30	ENST00000294008	NM_032444.2	1420	cCa/ca																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778099	3778099	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	80	456	0	ENST00000262367.5:c.6949del	p.Gln2317SerfsTer79	p.Q2317Sfs*79	ENST00000262367	NM_004380.2	2317	Cag/ag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	94	444	1	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81946260	81946260	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519831		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	81	335	0	ENST00000359376.3:c.1993C>T	p.Arg665Trp	p.R665W	ENST00000359376	NM_002661.3	665	Cgg/Tgg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627361	37627361	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	88	401	0	ENST00000447079.4:c.1280del	p.Leu427CysfsTer9	p.L427Cfs*9	ENST00000447079	NM_015083.1	426	Ttt/tt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	84	389	0	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	109	354	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	112	527	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532556	63532556	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	111	432	0	ENST00000307078.5:c.2023del	p.Arg675ValfsTer14	p.R675Vfs*14	ENST00000307078	NM_004655.3	675	Cgt/gt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78936750	78936750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	102	370	0	ENST00000306801.3:c.3832G>A	p.Ala1278Thr	p.A1278T	ENST00000306801	NM_020761.2	1278	Gcc/Acc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955111	17955112	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755706305		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	61	358	1	ENST00000458235.1:c.115dup	p.Gln39ProfsTer13	p.Q39Pfs*13	ENST00000458235	NM_000215.3	39	cag/cCag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221315	36221315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	89	430	0	ENST00000222270.7:c.5149C>T	p.Arg1717Trp	p.R1717W	ENST00000222270	NM_014727.1	1717	Cgg/Tgg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086005	16086005	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893648		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	62	375	0	ENST00000281043.3:c.1181G>A	p.Arg394His	p.R394H	ENST00000281043	NM_005378.4	394	cGc/cAc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs748696421		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	58	330	0	ENST00000397062.3:c.100C>T	p.Arg34Ter	p.R34*	ENST00000397062	NM_006164.4	34	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017757	31017757	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1318312862		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	40	299	0	ENST00000375687.4:c.619A>G	p.Ser207Gly	p.S207G	ENST00000375687	NM_015338.5	207	Agc/Ggc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	70	370	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	171	339	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	87	468	2	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499363	89499363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1317589623		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	69	377	0	ENST00000336596.2:c.2538del	p.Met847TrpfsTer10	p.M847Wfs*10	ENST00000336596	NM_005233.5	845	Ccc/cc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467373	66467373	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	59	362	2	ENST00000273854.3:c.896del	p.Asn299MetfsTer123	p.N299Mfs*123	ENST00000273854	NM_004439.5	299	aAt/at																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057035	180057035	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753792784		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	82	382	0	ENST00000261937.6:c.584C>T	p.Thr195Met	p.T195M	ENST00000261937	NM_182925.4	195	aCg/aTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177039	56177039	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777628678		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	52	322	0	ENST00000399503.3:c.2309C>T	p.Ala770Val	p.A770V	ENST00000399503	NM_005921.1	770	gCt/gTt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004349	150004349	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	65	330	0	ENST00000253339.5:c.1876C>T	p.Arg626Ter	p.R626*	ENST00000253339		626	Cga/Tga																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239111	31239111	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	33	385	0	ENST00000376228.5:c.358C>T	p.Gln120Ter	p.Q120*	ENST00000376228	NM_002117.5	120	Cag/Tag																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	32	263	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	73	365	0	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	73	277	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	68	264	0	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120459187	120459187	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	61	413	0	ENST00000256646.2:c.6158G>T	p.Arg2053Leu	p.R2053L	ENST00000256646	NM_024408.3	2053	cGc/cTc																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230492911	230492911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	46	419	0	ENST00000525115.1:c.281C>T	p.Thr94Met	p.T94M	ENST00000525115		94	aCg/aTg																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518493	69518493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	39	272	0	ENST00000294312.3:c.152G>A	p.Gly51Asp	p.G51D	ENST00000294312	NM_005117.2	51	gGc/gAc																																																																															
GAB2	9846	MSKCC	GRCh37	11	77991911	77991911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	53	386	0	ENST00000361507.4:c.112C>T	p.Arg38Trp	p.R38W	ENST00000361507	NM_080491.2	38	Cgg/Tgg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870996	12871010	+	inframe_deletion	In_Frame_Del	DEL	GAGTGGCAAGAGGTG	GAGTGGCAAGAGGTG	-			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	83	391	0	ENST00000228872.4:c.226_240del	p.Trp76_Glu80del	p.W76_E80del	ENST00000228872	NM_004064.3	75	GAGTGGCAAGAGGTG/-																																																																															
POLE	5426	MSKCC	GRCh37	12	133226063	133226065	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs771544067		P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	68	388	0	ENST00000320574.5:c.3832_3834del	p.Lys1278del	p.K1278del	ENST00000320574	NM_006231.2	1278	AAG/-																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492309	56492309	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	75	325	0	ENST00000267101.3:c.2642A>C	p.Glu881Ala	p.E881A	ENST00000267101	NM_001982.3	881	gAg/gCg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56494844	56494844	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	90	318	1	ENST00000267101.3:c.3202-1G>T		p.X1068_splice	ENST00000267101	NM_001982.3	1068																																																																																
NKX2-1	7080	MSKCC	GRCh37	14	36986599	36986599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	22	336	0	ENST00000354822.5:c.1090G>A	p.Ala364Thr	p.A364T	ENST00000354822	NM_001079668.2	364	Gcc/Acc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43714325	43714325	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	21	355	0	ENST00000382044.4:c.3829-1G>T		p.X1277_splice	ENST00000382044	NM_001141980.1	1277																																																																																
RAD51D	5892	MSKCC	GRCh37	17	33428245	33428245	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	33	350	0	ENST00000335858.7:c.542C>A	p.Ala181Glu	p.A181E	ENST00000335858	NM_133629.2	181	gCg/gAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492740	56492740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	85	395	2	ENST00000407977.2:c.199G>A	p.Gly67Ser	p.G67S	ENST00000407977		67	Ggt/Agt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121113	11121113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	96	412	0	ENST00000344626.4:c.2180G>A	p.Gly727Asp	p.G727D	ENST00000344626	NM_003072.3	727	gGc/gAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302357	15302357	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	109	427	0	ENST00000263388.2:c.914G>T	p.Gly305Val	p.G305V	ENST00000263388	NM_000435.2	305	gGc/gTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223144	36223144	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	92	405	0	ENST00000222270.7:c.5697del	p.Thr1900GlnfsTer34	p.T1900Qfs*34	ENST00000222270	NM_014727.1	1898	atC/at																																																																															
INSR	3643	MSKCC	GRCh37	19	7166313	7166313	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	79	348	0	ENST00000302850.5:c.1713A>T	p.Lys571Asn	p.K571N	ENST00000302850	NM_000208.2	571	aaA/aaT																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46588115	46588117	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	31	387	0	ENST00000263734.3:c.672_674del	p.Ile224del	p.I224del	ENST00000263734	NM_001430.4	222	cTCAtc/ctc																																																																															
SRC	6714	MSKCC	GRCh37	20	36012737	36012737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	54	356	0	ENST00000358208.4:c.181C>T	p.Pro61Ser	p.P61S	ENST00000358208		61	Ccc/Tcc																																																																															
EP300	2033	MSKCC	GRCh37	22	41572414	41572414	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	107	440	1	ENST00000263253.7:c.4943A>G	p.Gln1648Arg	p.Q1648R	ENST00000263253	NM_001429.3	1648	cAg/cGg																																																																															
KIT	3815	MSKCC	GRCh37	4	55593635	55593635	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	25	341	0	ENST00000288135.5:c.1701T>A	p.Asn567Lys	p.N567K	ENST00000288135	NM_000222.2	567	aaT/aaA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201845	66201845	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	51	339	0	ENST00000273854.3:c.2659-2A>C		p.X887_splice	ENST00000273854	NM_004439.5	887																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66286233	66286233	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	30	311	0	ENST00000273854.3:c.1453A>G	p.Ile485Val	p.I485V	ENST00000273854	NM_004439.5	485	Atc/Gtc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671843	30671843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	96	427	0	ENST00000376406.3:c.5117C>T	p.Thr1706Ile	p.T1706I	ENST00000376406	NM_014641.2	1706	aCa/aTa																																																																															
SMO	6608	MSKCC	GRCh37	7	128846049	128846049	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	95	465	0	ENST00000249373.3:c.979G>T	p.Ala327Ser	p.A327S	ENST00000249373	NM_005631.4	327	Gct/Tct																																																																															
EZH2	2146	MSKCC	GRCh37	7	148515055	148515055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	88	366	0	ENST00000320356.2:c.1154G>A	p.Ser385Asn	p.S385N	ENST00000320356	NM_004456.4	385	aGt/aAt																																																																															
HGF	3082	MSKCC	GRCh37	7	81392088	81392088	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	50	320	1	ENST00000222390.5:c.189del	p.Val64Ter	p.V64*	ENST00000222390	NM_000601.4	63	aaA/aa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739448	145739448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	82	361	0	ENST00000428558.2:c.1922C>T	p.Thr641Ile	p.T641I	ENST00000428558	NM_004260.3	641	aCa/aTa																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2123873	2123873	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	56	387	0	ENST00000349721.2:c.3921del	p.Ser1308ProfsTer19	p.S1308Pfs*19	ENST00000349721	NM_003070.3	1306	aGg/ag																																																																															
TEK	7010	MSKCC	GRCh37	9	27202899	27202899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	80	376	0	ENST00000380036.4:c.1991G>A	p.Gly664Asp	p.G664D	ENST00000380036	NM_000459.3	664	gGc/gAc																																																																															
ARAF	369	MSKCC	GRCh37	X	47424539	47424539	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0089088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	45	162	0	ENST00000377045.4:c.458+1G>A		p.X153_splice	ENST00000377045	NM_001654.4	153																																																																																
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0089090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	116	465	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																															
APC	324	MSKCC	GRCh37	5	112175756	112175756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0089090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	141	460	0	ENST00000257430.4:c.4466del	p.Leu1489TyrfsTer18	p.L1489Yfs*18	ENST00000257430	NM_000038.5	1489	Tta/ta																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433357	49433357	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774178055		P-0089090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	43	504	0	ENST00000301067.7:c.8090G>A	p.Arg2697His	p.R2697H	ENST00000301067	NM_003482.3	2697	cGc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70360552	70360552	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762612521		P-0089090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	23	248	0	ENST00000374080.3:c.6112G>A	p.Val2038Ile	p.V2038I	ENST00000374080		2038	Gtc/Atc																																																																															
BCL6	604	MSKCC	GRCh37	3	187446297	187446297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	73	426	0	ENST00000232014.4:c.1391G>T	p.Ser464Ile	p.S464I	ENST00000232014	NM_001130845.1	464	aGc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0089091-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	98	313	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0089091-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	88	396	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499772	8499772	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773166856		P-0089091-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	97	397	0	ENST00000356435.5:c.2197C>T	p.Arg733Cys	p.R733C	ENST00000356435		733	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0089091-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	40	259	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374715	149374715	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773592492		P-0089091-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	79	340	0	ENST00000360632.3:c.379C>T	p.Pro127Ser	p.P127S	ENST00000360632	NM_015472.4	127	Ccc/Tcc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249448	153249448	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0089091-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	68	384	0	ENST00000281708.4:c.1330A>G	p.Lys444Glu	p.K444E	ENST00000281708	NM_033632.3	444	Aaa/Gaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245447	153245447	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0089091-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	83	423	0	ENST00000281708.4:c.1744T>A	p.Ser582Thr	p.S582T	ENST00000281708	NM_033632.3	582	Tcg/Acg																																																																															
AR	367	MSKCC	GRCh37	X	66765032	66765032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089091-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	78	386	0	ENST00000374690.3:c.44C>T	p.Pro15Leu	p.P15L	ENST00000374690	NM_000044.3	15	cCg/cTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265823	41266422	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGA	GTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGA	-			P-0089091-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			13	106	85	0	ENST00000349496.5:c.14-192_242-21del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089105-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	203	439	0	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376221	225376221	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0089105-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			55	52	329	0	ENST00000264414.4:c.733A>G	p.Ile245Val	p.I245V	ENST00000264414	NM_003590.4	245	Ata/Gta																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752861	57752861	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0089105-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	75	397	0	ENST00000274289.3:c.1067T>G	p.Leu356Ter	p.L356*	ENST00000274289	NM_006622.3	356	tTa/tGa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753776	42753776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089105-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	219	625	0	ENST00000222329.4:c.488C>T	p.Pro163Leu	p.P163L	ENST00000222329	NM_006494.2	163	cCa/cTa																																																																															
SDHB	6390	MSKCC	GRCh37	1	17355094	17355094	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs398122805		P-0089114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	126	469	0	ENST00000375499.3:c.423+1G>A		p.X141_splice	ENST00000375499	NM_003000.2	141																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0089114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	101	324	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473723	67473723	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223740		P-0089114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	126	462	0	ENST00000327367.4:c.803G>A	p.Arg268His	p.R268H	ENST00000327367	NM_005902.3	268	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0089114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	125	495	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249341	110249341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	255	494	0	ENST00000374672.4:c.1232C>T	p.Ser411Phe	p.S411F	ENST00000374672	NM_004235.4	411	tCc/tTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971037	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0089114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			739	111	536	0	ENST00000304494.5:c.321_322del	p.Asp108CysfsTer11	p.D108Cfs*11	ENST00000304494	NM_000077.4	107	cgCGat/cgat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0089114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	264	529	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30733081	30733081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	92	478	0	ENST00000359013.4:c.1769C>T	p.Thr590Ile	p.T590I	ENST00000359013	NM_001024847.2	590	aCt/aTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0089121-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	100	582	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041618	47041620	+	frameshift_variant	Frame_Shift_Del	DEL	TAT	TAT	A			P-0089121-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	113	370	0	ENST00000329236.7:c.1609_1611delinsA	p.Tyr537SerfsTer12	p.Y537Sfs*12	ENST00000329236	NM_001204466.1	537	TAT/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0089147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	40	340	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508425	106508425	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754761135		P-0089147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	14	389	0	ENST00000359195.3:c.419G>A	p.Arg140Gln	p.R140Q	ENST00000359195	NM_002649.2	140	cGg/cAg																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813418	102813418	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	16	374	0	ENST00000307046.8:c.271A>C	p.Ile91Leu	p.I91L	ENST00000307046	NM_001111285.1	91	Atc/Ctc																																																																															
MGA	23269	MSKCC	GRCh37	15	42042189	42042189	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0089147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	48	405	0	ENST00000219905.7:c.6384del	p.Ser2128ArgfsTer51	p.S2128Rfs*51	ENST00000219905	NM_001164273.1	2128	agT/ag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11169711	11169711	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1375433078		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	97	356	0	ENST00000361445.4:c.7442C>A	p.Ser2481Tyr	p.S2481Y	ENST00000361445	NM_004958.3	2481	tCt/tAt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11184568	11184568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	94	333	0	ENST00000361445.4:c.6649C>T	p.Arg2217Trp	p.R2217W	ENST00000361445	NM_004958.3	2217	Cgg/Tgg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11298651	11298651	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1235010967		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	35	411	0	ENST00000361445.4:c.1810C>T	p.Arg604Cys	p.R604C	ENST00000361445	NM_004958.3	604	Cgc/Tgc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11317186	11317186	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763230714		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	116	452	0	ENST00000361445.4:c.308G>A	p.Arg103Gln	p.R103Q	ENST00000361445	NM_004958.3	103	cGa/cAa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458196	120458196	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	156	525	0	ENST00000256646.2:c.7149C>A	p.Tyr2383Ter	p.Y2383*	ENST00000256646	NM_024408.3	2383	taC/taA																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120491669	120491669	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	103	356	0	ENST00000256646.2:c.2560T>G	p.Phe854Val	p.F854V	ENST00000256646	NM_024408.3	854	Ttt/Gtt																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150921904	150921904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	126	429	0	ENST00000271640.5:c.1483C>T	p.Arg495Ter	p.R495*	ENST00000271640	NM_001145415.1	495	Cga/Tga																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851378	156851378	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374957692		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	118	495	0	ENST00000524377.1:c.2335G>A	p.Ala779Thr	p.A779T	ENST00000524377	NM_002529.3	779	Gcc/Acc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254881	16254881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	38	492	0	ENST00000375759.3:c.2146G>T	p.Asp716Tyr	p.D716Y	ENST00000375759	NM_015001.2	716	Gac/Tac																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256657	16256657	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	124	455	0	ENST00000375759.3:c.3922A>C	p.Lys1308Gln	p.K1308Q	ENST00000375759	NM_015001.2	1308	Aaa/Caa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724427	162724427	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	89	407	0	ENST00000367921.3:c.199G>T	p.Glu67Ter	p.E67*	ENST00000367921	NM_006182.2	67	Gaa/Taa																																																																															
NUF2	83540	MSKCC	GRCh37	1	163297332	163297332	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1292835761		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	16	294	0	ENST00000271452.3:c.178C>T	p.Arg60Ter	p.R60*	ENST00000271452	NM_145697.2	60	Cga/Tga																																																																															
CDC73	79577	MSKCC	GRCh37	1	193104704	193104704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	23	314	0	ENST00000367435.3:c.408G>T	p.Lys136Asn	p.K136N	ENST00000367435	NM_024529.4	136	aaG/aaT																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206651584	206651584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	40	457	0	ENST00000367120.3:c.894C>A	p.Phe298Leu	p.F298L	ENST00000367120	NM_014002.3	298	ttC/ttA																																																																															
PARP1	142	MSKCC	GRCh37	1	226552729	226552729	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746139482		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	159	436	0	ENST00000366794.5:c.2632C>T	p.Arg878Trp	p.R878W	ENST00000366794	NM_001618.3	878	Cgg/Tgg																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231487305	231487305	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752112777		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	82	385	0	ENST00000295050.7:c.706G>A	p.Ala236Thr	p.A236T	ENST00000295050	NM_032018.5	236	Gca/Aca																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716094	243716094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	46	291	0	ENST00000263826.5:c.1100G>A	p.Arg367Gln	p.R367Q	ENST00000263826	NM_005465.4	367	cGa/cAa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828186	243828186	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	22	239	0	ENST00000263826.5:c.173-1G>T		p.X58_splice	ENST00000263826	NM_005465.4	58																																																																																
STK40	83931	MSKCC	GRCh37	1	36807433	36807433	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	49	386	1	ENST00000373129.3:c.1231C>T	p.Arg411Ter	p.R411*	ENST00000373129	NM_032017.1	411	Cga/Tga																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937198	36937198	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	196	507	0	ENST00000361632.4:c.1121C>A	p.Ser374Tyr	p.S374Y	ENST00000361632		374	tCt/tAt																																																																															
MPL	4352	MSKCC	GRCh37	1	43812138	43812138	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139770726		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	39	412	0	ENST00000372470.3:c.1003G>A	p.Glu335Lys	p.E335K	ENST00000372470	NM_005373.2	335	Gaa/Aaa																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45795032	45795032	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs768671057		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	128	412	1	ENST00000372115.3:c.1554C>A	p.Phe518Leu	p.F518L	ENST00000372115	NM_001048171.1	518	ttC/ttA																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521491	46521491	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs942307069		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	28	371	0	ENST00000262741.5:c.917G>A	p.Arg306Gln	p.R306Q	ENST00000262741	NM_003629.3	306	cGa/cAa																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521542	46521542	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs916607718		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	123	359	0	ENST00000262741.5:c.866G>A	p.Arg289Gln	p.R289Q	ENST00000262741	NM_003629.3	289	cGa/cAa																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46724370	46724370	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138566817		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	26	356	0	ENST00000371975.4:c.223C>T	p.Arg75Ter	p.R75*	ENST00000371975	NM_003579.3	75	Cga/Tga																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743910	46743910	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754995325		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	149	443	0	ENST00000371975.4:c.2200G>A	p.Val734Ile	p.V734I	ENST00000371975	NM_003579.3	734	Gtc/Atc																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724416	112724416	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs767508015		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	30	469	0	ENST00000369452.4:c.300G>T	p.Glu100Asp	p.E100D	ENST00000369452	NM_007373.3	100	gaG/gaT																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724495	112724495	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	103	398	0	ENST00000369452.4:c.379G>T	p.Glu127Ter	p.E127*	ENST00000369452	NM_007373.3	127	Gaa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920396	114920396	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	98	321	0	ENST00000543371.1:c.1337A>C	p.Lys446Thr	p.K446T	ENST00000543371	NM_001198531.1	446	aAg/aCg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123239421	123239421	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764959117		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	104	412	0	ENST00000358487.5:c.2416G>A	p.Glu806Lys	p.E806K	ENST00000358487	NM_000141.4	806	Gaa/Aaa																																																																															
RET	5979	MSKCC	GRCh37	10	43615593	43615593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	180	435	0	ENST00000355710.3:c.2672C>T	p.Ser891Leu	p.S891L	ENST00000355710	NM_020975.4	891	tCg/tTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332221	70332221	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1224328336		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	126	412	0	ENST00000373644.4:c.126G>T	p.Lys42Asn	p.K42N	ENST00000373644	NM_030625.2	42	aaG/aaT																																																																															
TET1	80312	MSKCC	GRCh37	10	70333555	70333555	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	150	494	0	ENST00000373644.4:c.1460C>A	p.Ser487Ter	p.S487*	ENST00000373644	NM_030625.2	487	tCa/tAa																																																																															
TET1	80312	MSKCC	GRCh37	10	70404804	70404804	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	105	399	0	ENST00000373644.4:c.2318C>A	p.Ser773Ter	p.S773*	ENST00000373644	NM_030625.2	773	tCa/tAa																																																																															
TET1	80312	MSKCC	GRCh37	10	70406048	70406048	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199726871		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	146	383	0	ENST00000373644.4:c.3562G>A	p.Asp1188Asn	p.D1188N	ENST00000373644	NM_030625.2	1188	Gac/Aac																																																																															
TET1	80312	MSKCC	GRCh37	10	70406337	70406337	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	122	373	0	ENST00000373644.4:c.3851C>A	p.Ser1284Tyr	p.S1284Y	ENST00000373644	NM_030625.2	1284	tCt/tAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653824	89653824	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs794727244		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	37	280	0	ENST00000371953.3:c.122G>T	p.Arg41Ile	p.R41I	ENST00000371953	NM_000314.4	41	aGa/aTa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	50	266	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913294		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	26	317	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																															
PGR	5241	MSKCC	GRCh37	11	100962553	100962553	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778032418		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	33	336	1	ENST00000325455.5:c.1844G>A	p.Arg615His	p.R615H	ENST00000325455	NM_001202474.3	615	cGc/cAc																																																																															
PGR	5241	MSKCC	GRCh37	11	100999560	100999560	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778465984		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	119	574	0	ENST00000325455.5:c.242C>T	p.Ser81Leu	p.S81L	ENST00000325455	NM_001202474.3	81	tCg/tTg																																																																															
YAP1	10413	MSKCC	GRCh37	11	102080254	102080254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193100333		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	119	313	0	ENST00000282441.5:c.991C>T	p.Arg331Trp	p.R331W	ENST00000282441	NM_001130145.2	331	Cgg/Tgg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102201872	102201872	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs749826929		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	29	376	0	ENST00000263464.3:c.1224G>T	p.Glu408Asp	p.E408D	ENST00000263464	NM_001165.4	408	gaG/gaT																																																																															
CTR9	9646	MSKCC	GRCh37	11	10800527	10800527	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768463477		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	142	386	0	ENST00000361367.2:c.3397G>A	p.Glu1133Lys	p.E1133K	ENST00000361367	NM_014633.3	1133	Gaa/Aaa																																																																															
ATM	472	MSKCC	GRCh37	11	108115575	108115575	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	14	314	0	ENST00000278616.4:c.723G>T	p.Lys241Asn	p.K241N	ENST00000278616	NM_000051.3	241	aaG/aaT																																																																															
ATM	472	MSKCC	GRCh37	11	108115594	108115594	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs730881336		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	36	345	0	ENST00000278616.4:c.742C>T	p.Arg248Ter	p.R248*	ENST00000278616	NM_000051.3	248	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108155074	108155074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	61	360	0	ENST00000278616.4:c.3867G>T	p.Lys1289Asn	p.K1289N	ENST00000278616	NM_000051.3	1289	aaG/aaT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343871	118343871	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs782290578		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	153	503	0	ENST00000534358.1:c.1997G>T	p.Gly666Val	p.G666V	ENST00000534358	NM_005933.3	666	gGt/gTt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118370029	118370029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	86	374	0	ENST00000534358.1:c.5973G>T	p.Glu1991Asp	p.E1991D	ENST00000534358	NM_005933.3	1991	gaG/gaT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374471	118374471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			709	39	526	0	ENST00000534358.1:c.7864C>T	p.Arg2622Cys	p.R2622C	ENST00000534358	NM_005933.3	2622	Cgc/Tgc																																																																															
CBL	867	MSKCC	GRCh37	11	119142446	119142446	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs267602720		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	31	317	0	ENST00000264033.4:c.445C>T	p.Arg149Ter	p.R149*	ENST00000264033	NM_005188.3	149	Cga/Tga																																																																															
WT1	7490	MSKCC	GRCh37	11	32456254	32456254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756414084		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	119	387	0	ENST00000332351.3:c.638G>A	p.Arg213His	p.R213H	ENST00000332351	NM_024426.4	213	cGc/cAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944012	71944012	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs777831045		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	34	490	0	ENST00000298229.2:c.1945C>T	p.Arg649Ter	p.R649*	ENST00000298229	NM_001567.3	649	Cga/Tga																																																																															
EED	8726	MSKCC	GRCh37	11	85961451	85961451	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	21	333	0	ENST00000263360.6:c.228G>T	p.Lys76Asn	p.K76N	ENST00000263360	NM_003797.3	76	aaG/aaT																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180417	94180417	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	126	292	0	ENST00000323929.3:c.1751C>A	p.Ser584Ter	p.S584*	ENST00000323929	NM_005591.3	584	tCa/tAa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94224031	94224031	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116679717		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	66	382	0	ENST00000323929.3:c.121G>A	p.Asp41Asn	p.D41N	ENST00000323929	NM_005591.3	41	Gat/Aat																																																																															
RAD52	5893	MSKCC	GRCh37	12	1023124	1023124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	78	412	0	ENST00000358495.3:c.1131G>T	p.Gln377His	p.Q377H	ENST00000358495	NM_134424.2	377	caG/caT																																																																															
RAD52	5893	MSKCC	GRCh37	12	1023606	1023606	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	179	354	0	ENST00000358495.3:c.958G>T	p.Glu320Ter	p.E320*	ENST00000358495	NM_134424.2	320	Gaa/Taa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115436	115115436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	132	334	0	ENST00000257566.3:c.890A>G	p.Asn297Ser	p.N297S	ENST00000257566	NM_016569.3	297	aAc/aGc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431481	121431481	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs769086289		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	146	462	0	ENST00000257555.6:c.685C>T	p.Arg229Ter	p.R229*	ENST00000257555		229	Cga/Tga																																																																															
POLE	5426	MSKCC	GRCh37	12	133219113	133219113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771896231		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	116	484	0	ENST00000320574.5:c.4931C>T	p.Ser1644Leu	p.S1644L	ENST00000320574	NM_006231.2	1644	tCg/tTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519943		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	178	344	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435052	18435052	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	67	361	0	ENST00000266497.5:c.37G>T	p.Glu13Ter	p.E13*	ENST00000266497		13	Gaa/Taa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18466993	18466993	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs370262872		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	99	268	0	ENST00000266497.5:c.1132C>T	p.Arg378Ter	p.R378*	ENST00000266497		378	Cga/Tga																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18656281	18656281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	83	379	0	ENST00000266497.5:c.2960G>A	p.Gly987Glu	p.G987E	ENST00000266497		987	gGa/gAa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18699296	18699296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	102	343	0	ENST00000266497.5:c.3397G>T	p.Asp1133Tyr	p.D1133Y	ENST00000266497		1133	Gac/Tac																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18719930	18719930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	71	254	0	ENST00000266497.5:c.3827G>A	p.Arg1276Lys	p.R1276K	ENST00000266497		1276	aGa/aAa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	402318	402318	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1055745005		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	26	343	0	ENST00000399788.2:c.4473G>T	p.Glu1491Asp	p.E1491D	ENST00000399788	NM_001042603.1	1491	gaG/gaT																																																																															
KDM5A	5927	MSKCC	GRCh37	12	430229	430229	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	47	377	0	ENST00000399788.2:c.2473G>T	p.Glu825Ter	p.E825*	ENST00000399788	NM_001042603.1	825	Gaa/Taa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233172	46233172	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376273452		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	91	379	0	ENST00000334344.6:c.1391C>T	p.Ala464Val	p.A464V	ENST00000334344	NM_152641.2	464	gCg/gTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243514	46243514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140086050		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	100	394	0	ENST00000334344.6:c.1867C>T	p.Arg623Cys	p.R623C	ENST00000334344	NM_152641.2	623	Cgt/Tgt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244436	46244436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	44	435	0	ENST00000334344.6:c.2530G>T	p.Asp844Tyr	p.D844Y	ENST00000334344	NM_152641.2	844	Gat/Tat																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244530	46244530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	188	456	0	ENST00000334344.6:c.2624G>A	p.Gly875Glu	p.G875E	ENST00000334344	NM_152641.2	875	gGa/gAa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245099	46245099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1251425183		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	47	423	0	ENST00000334344.6:c.3193C>T	p.Leu1065Phe	p.L1065F	ENST00000334344	NM_152641.2	1065	Ctt/Ttt																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50488298	50488298	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	98	360	0	ENST00000394963.4:c.1212G>T	p.Met404Ile	p.M404I	ENST00000394963	NM_003076.4	404	atG/atT																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50488303	50488303	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs750857733		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	175	360	0	ENST00000394963.4:c.1217C>A	p.Ser406Tyr	p.S406Y	ENST00000394963	NM_003076.4	406	tCt/tAt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865611	57865611	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1027428919		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	285	491	0	ENST00000228682.2:c.3088G>A	p.Glu1030Lys	p.E1030K	ENST00000228682	NM_005269.2	1030	Gaa/Aaa																																																																															
MDM2	4193	MSKCC	GRCh37	12	69229705	69229705	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs549965230		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	77	334	0	ENST00000462284.1:c.781G>A	p.Asp261Asn	p.D261N	ENST00000462284	NM_002392.5	261	Gac/Aac																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436784	110436784	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	85	452	0	ENST00000375856.3:c.1617C>A	p.Phe539Leu	p.F539L	ENST00000375856	NM_003749.2	539	ttC/ttA																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557776	21557776	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	418	413	0	ENST00000382592.4:c.2069C>A	p.Thr690Asn	p.T690N	ENST00000382592	NM_014572.2	690	aCt/aAt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28883012	28883012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	39	328	0	ENST00000282397.4:c.3688G>T	p.Glu1230Ter	p.E1230*	ENST00000282397	NM_002019.4	1230	Gaa/Taa																																																																															
FLT1	2321	MSKCC	GRCh37	13	29002038	29002038	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757020625		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	67	273	0	ENST00000282397.4:c.1127C>T	p.Ala376Val	p.A376V	ENST00000282397	NM_002019.4	376	gCg/gTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32893291	32893291	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs80358435		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	26	384	0	ENST00000380152.3:c.145G>T	p.Glu49Ter	p.E49*	ENST00000380152		49	Gaa/Taa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906949	32906949	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202373		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	149	400	0	ENST00000380152.3:c.1334C>A	p.Ser445Tyr	p.S445Y	ENST00000380152		445	tCt/tAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911247	32911247	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs431825298		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	20	399	0	ENST00000380152.3:c.2755G>A	p.Glu919Lys	p.E919K	ENST00000380152		919	Gaa/Aaa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911589	32911589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	140	340	0	ENST00000380152.3:c.3097G>T	p.Asp1033Tyr	p.D1033Y	ENST00000380152		1033	Gat/Tat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914550	32914550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80358842		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	50	441	0	ENST00000380152.3:c.6058G>A	p.Glu2020Lys	p.E2020K	ENST00000380152		2020	Gaa/Aaa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32932000	32932000	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	59	372	0	ENST00000380152.3:c.7739A>C	p.Gln2580Pro	p.Q2580P	ENST00000380152		2580	cAg/cCg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134566	41134566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	119	440	0	ENST00000379561.5:c.1062G>T	p.Lys354Asn	p.K354N	ENST00000379561	NM_002015.3	354	aaG/aaT																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134594	41134594	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			724	85	435	0	ENST00000379561.5:c.1034C>A	p.Ser345Tyr	p.S345Y	ENST00000379561	NM_002015.3	345	tCt/tAt																																																																															
RB1	5925	MSKCC	GRCh37	13	48881469	48881469	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	66	331	0	ENST00000267163.4:c.191T>G	p.Leu64Ter	p.L64*	ENST00000267163	NM_000321.2	64	tTa/tGa																																																																															
RB1	5925	MSKCC	GRCh37	13	48937076	48937076	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	22	315	0	ENST00000267163.4:c.844G>T	p.Glu282Ter	p.E282*	ENST00000267163	NM_000321.2	282	Gaa/Taa																																																																															
RB1	5925	MSKCC	GRCh37	13	48951156	48951156	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060503078		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	100	234	0	ENST00000267163.4:c.1318G>A	p.Glu440Lys	p.E440K	ENST00000267163	NM_000321.2	440	Gaa/Aaa																																																																															
RB1	5925	MSKCC	GRCh37	13	49039195	49039195	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754814477		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	218	311	0	ENST00000267163.4:c.2273C>T	p.Ser758Leu	p.S758L	ENST00000267163	NM_000321.2	758	tCg/tTg																																																																															
RB1	5925	MSKCC	GRCh37	13	49050948	49050948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	282	329	0	ENST00000267163.4:c.2632G>A	p.Asp878Asn	p.D878N	ENST00000267163	NM_000321.2	878	Gat/Aat																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281629	49281629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749662416		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	347	445	0	ENST00000282018.3:c.676C>T	p.Arg226Trp	p.R226W	ENST00000282018	NM_020377.2	226	Cgg/Tgg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73349353	73349353	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1026175478		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	27	329	0	ENST00000377767.4:c.983G>A	p.Arg328Gln	p.R328Q	ENST00000377767	NM_014953.3	328	cGa/cAa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355039	73355039	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	31	319	0	ENST00000377767.4:c.331G>T	p.Asp111Tyr	p.D111Y	ENST00000377767	NM_014953.3	111	Gat/Tat																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100143	30100143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs191202207		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	82	391	0	ENST00000331968.5:c.1477G>A	p.Glu493Lys	p.E493K	ENST00000331968	NM_002742.2	493	Gaa/Aaa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562862	95562862	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	110	364	0	ENST00000343455.3:c.4395G>T	p.Lys1465Asn	p.K1465N	ENST00000343455	NM_177438.2	1465	aaG/aaT																																																																															
DICER1	23405	MSKCC	GRCh37	14	95572113	95572113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	23	308	0	ENST00000343455.3:c.2995C>A	p.Leu999Ile	p.L999I	ENST00000343455	NM_177438.2	999	Ctt/Att																																																																															
DICER1	23405	MSKCC	GRCh37	14	95592924	95592924	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755944755		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	16	256	0	ENST00000343455.3:c.896C>T	p.Ser299Leu	p.S299L	ENST00000343455	NM_177438.2	299	tCg/tTg																																																																															
MGA	23269	MSKCC	GRCh37	15	41961791	41961791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	146	410	0	ENST00000219905.7:c.699C>A	p.Phe233Leu	p.F233L	ENST00000219905	NM_001164273.1	233	ttC/ttA																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43705429	43705429	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs752678808		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	142	421	0	ENST00000382044.4:c.5193G>T	p.Lys1731Asn	p.K1731N	ENST00000382044	NM_001141980.1	1731	aaG/aaT																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724685	43724685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	90	432	0	ENST00000382044.4:c.3382G>A	p.Asp1128Asn	p.D1128N	ENST00000382044	NM_001141980.1	1128	Gat/Aat																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724761	43724761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	136	430	0	ENST00000382044.4:c.3306G>T	p.Lys1102Asn	p.K1102N	ENST00000382044	NM_001141980.1	1102	aaG/aaT																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43769884	43769884	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	30	362	0	ENST00000382044.4:c.862G>T	p.Glu288Ter	p.E288*	ENST00000382044	NM_001141980.1	288	Gaa/Taa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43769902	43769902	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	112	357	0	ENST00000382044.4:c.844G>T	p.Glu282Ter	p.E282*	ENST00000382044	NM_001141980.1	282	Gaa/Taa																																																																															
B2M	567	MSKCC	GRCh37	15	45007747	45007747	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	129	378	0	ENST00000558401.1:c.194G>T	p.Arg65Ile	p.R65I	ENST00000558401	NM_004048.2	65	aGa/aTa																																																																															
USP8	9101	MSKCC	GRCh37	15	50782026	50782026	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374126671		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	52	278	0	ENST00000307179.4:c.1919G>A	p.Arg640Gln	p.R640Q	ENST00000307179		640	cGa/cAa																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631671	90631671	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	113	497	0	ENST00000330062.3:c.598G>T	p.Asp200Tyr	p.D200Y	ENST00000330062	NM_002168.2	200	Gat/Tat																																																																															
IDH2	3418	MSKCC	GRCh37	15	90633818	90633818	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371777275		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	97	438	0	ENST00000330062.3:c.266G>A	p.Arg89His	p.R89H	ENST00000330062	NM_002168.2	89	cGt/cAt																																																																															
BLM	641	MSKCC	GRCh37	15	91292938	91292938	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	44	415	0	ENST00000355112.3:c.440C>A	p.Ser147Tyr	p.S147Y	ENST00000355112	NM_000057.2	147	tCt/tAt																																																																															
BLM	641	MSKCC	GRCh37	15	91293070	91293070	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs569086568		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	104	418	0	ENST00000355112.3:c.572G>T	p.Arg191Ile	p.R191I	ENST00000355112	NM_000057.2	191	aGa/aTa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274121	10274121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	118	447	0	ENST00000330684.3:c.148G>A	p.Glu50Lys	p.E50K	ENST00000330684	NM_001134407.1	50	Gaa/Aaa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029408	14029408	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368830992		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	42	433	0	ENST00000311895.7:c.1619C>T	p.Ser540Leu	p.S540L	ENST00000311895	NM_005236.2	540	tCg/tTg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041557	14041557	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1180030515		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	45	384	0	ENST00000311895.7:c.2104C>T	p.Arg702Trp	p.R702W	ENST00000311895	NM_005236.2	702	Cgg/Tgg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641347	23641347	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730881887		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	103	432	0	ENST00000261584.4:c.2128A>G	p.Thr710Ala	p.T710A	ENST00000261584	NM_024675.3	710	Acg/Gcg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641355	23641355	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	34	409	0	ENST00000261584.4:c.2120C>A	p.Pro707His	p.P707H	ENST00000261584	NM_024675.3	707	cCt/cAt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641575	23641575	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	96	406	0	ENST00000261584.4:c.1900C>A	p.Pro634Thr	p.P634T	ENST00000261584	NM_024675.3	634	Cca/Aca																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646559	23646559	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	122	408	0	ENST00000261584.4:c.1308G>T	p.Lys436Asn	p.K436N	ENST00000261584	NM_024675.3	436	aaG/aaT																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2636843	2636843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	114	465	0	ENST00000342085.4:c.1292C>T	p.Ser431Phe	p.S431F	ENST00000342085	NM_002613.4	431	tCc/tTc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779545	3779545	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	42	500	0	ENST00000262367.5:c.5503G>T	p.Glu1835Ter	p.E1835*	ENST00000262367	NM_004380.2	1835	Gaa/Taa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3794922	3794922	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	102	317	0	ENST00000262367.5:c.3955C>T	p.Arg1319Ter	p.R1319*	ENST00000262367	NM_004380.2	1319	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3827632	3827632	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751540839		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	119	309	0	ENST00000262367.5:c.2140C>T	p.Arg714Cys	p.R714C	ENST00000262367	NM_004380.2	714	Cgc/Tgc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50826570	50826570	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	56	242	0	ENST00000398568.2:c.2295A>C	p.Lys765Asn	p.K765N	ENST00000398568	NM_001042412.1	765	aaA/aaC																																																																															
CBFB	865	MSKCC	GRCh37	16	67116170	67116170	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761036715		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	178	338	0	ENST00000412916.2:c.454G>A	p.Glu152Lys	p.E152K	ENST00000412916		152	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68842617	68842617	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	125	461	0	ENST00000261769.5:c.553G>T	p.Glu185Ter	p.E185*	ENST00000261769	NM_004360.3	185	Gaa/Taa																																																																															
CDH1	999	MSKCC	GRCh37	16	68857307	68857307	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	131	299	0	ENST00000261769.5:c.1942G>T	p.Glu648Ter	p.E648*	ENST00000261769	NM_004360.3	648	Gaa/Taa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827862	72827862	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	122	429	0	ENST00000268489.5:c.8719G>T	p.Asp2907Tyr	p.D2907Y	ENST00000268489	NM_006885.3	2907	Gac/Tac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827964	72827964	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768307205		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	114	438	0	ENST00000268489.5:c.8617G>A	p.Glu2873Lys	p.E2873K	ENST00000268489	NM_006885.3	2873	Gaa/Aaa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993158	72993158	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1332687082		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	154	460	0	ENST00000268489.5:c.887C>T	p.Ser296Leu	p.S296L	ENST00000268489	NM_006885.3	296	tCg/tTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942153	81942153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	107	355	0	ENST00000359376.3:c.1690C>T	p.Arg564Trp	p.R564W	ENST00000359376	NM_002661.3	564	Cgg/Tgg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341329	89341329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	18	206	1	ENST00000301030.4:c.7606C>T	p.Arg2536Trp	p.R2536W	ENST00000301030	NM_001256183.1	2536	Cgg/Tgg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349799	89349799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	158	485	0	ENST00000301030.4:c.3151G>T	p.Glu1051Ter	p.E1051*	ENST00000301030	NM_001256183.1	1051	Gaa/Taa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350734	89350734	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146294483		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	93	436	0	ENST00000301030.4:c.2216C>T	p.Ser739Leu	p.S739L	ENST00000301030	NM_001256183.1	739	tCg/tTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858470	9858470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	33	437	0	ENST00000330684.3:c.2931C>A	p.Asn977Lys	p.N977K	ENST00000330684	NM_001134407.1	977	aaC/aaA																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011200	12011200	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	10	281	0	ENST00000353533.5:c.607G>T	p.Glu203Ter	p.E203*	ENST00000353533	NM_003010.3	203	Gaa/Taa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15938210	15938210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	30	349	0	ENST00000268712.3:c.7004C>A	p.Ser2335Tyr	p.S2335Y	ENST00000268712	NM_006311.3	2335	tCt/tAt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004727	16004727	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	118	436	0	ENST00000268712.3:c.2527G>T	p.Glu843Ter	p.E843*	ENST00000268712	NM_006311.3	843	Gaa/Taa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16049724	16049724	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	78	337	0	ENST00000268712.3:c.1048C>T	p.Arg350Ter	p.R350*	ENST00000268712	NM_006311.3	350	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29546044	29546044	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587778548		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	104	401	1	ENST00000358273.4:c.1549G>A	p.Glu517Lys	p.E517K	ENST00000358273	NM_001042492.2	517	Gaa/Aaa																																																																															
NF1	4763	MSKCC	GRCh37	17	29556197	29556197	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	45	210	0	ENST00000358273.4:c.2564G>T	p.Arg855Ile	p.R855I	ENST00000358273	NM_001042492.2	855	aGa/aTa																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690471	33690471	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs577664302		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	134	427	1	ENST00000308377.4:c.356G>A	p.Arg119His	p.R119H	ENST00000308377	NM_152270.3	119	cGc/cAc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37672011	37672011	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	22	283	0	ENST00000447079.4:c.2796G>T	p.Lys932Asn	p.K932N	ENST00000447079	NM_015083.1	932	aaG/aaT																																																																															
EZH1	2145	MSKCC	GRCh37	17	40880881	40880881	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	53	351	0	ENST00000428826.2:c.79C>T	p.Arg27Ter	p.R27*	ENST00000428826		27	Cga/Tga																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243906	41243906	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs398122675		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	163	430	0	ENST00000357654.3:c.3642G>T	p.Glu1214Asp	p.E1214D	ENST00000357654	NM_007294.3	1214	gaG/gaT																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243927	41243927	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	119	455	0	ENST00000357654.3:c.3621G>T	p.Lys1207Asn	p.K1207N	ENST00000357654	NM_007294.3	1207	aaG/aaT																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244664	41244664	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80356955		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	27	442	0	ENST00000357654.3:c.2884G>A	p.Glu962Lys	p.E962K	ENST00000357654	NM_007294.3	962	Gaa/Aaa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740416	58740416	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777279856		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	107	362	0	ENST00000305921.3:c.1321C>T	p.Arg441Cys	p.R441C	ENST00000305921	NM_003620.3	441	Cgt/Tgt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59871053	59871053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	11	305	0	ENST00000259008.2:c.1378G>T	p.Asp460Tyr	p.D460Y	ENST00000259008	NM_032043.2	460	Gat/Tat																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59926518	59926518	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	59	362	0	ENST00000259008.2:c.479G>T	p.Arg160Ile	p.R160I	ENST00000259008	NM_032043.2	160	aGa/aTa																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217654	7217654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	32	405	0	ENST00000380728.2:c.273G>T	p.Lys91Asn	p.K91N	ENST00000380728		91	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs876659802		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	22	409	0	ENST00000269305.4:c.833C>A	p.Pro278His	p.P278H	ENST00000269305	NM_001126112.2	278	cCt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	41	397	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	155	439	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578421	7578421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779000871		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	129	508	0	ENST00000269305.4:c.509C>T	p.Thr170Met	p.T170M	ENST00000269305	NM_001126112.2	170	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	107	423	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7579882	7579882	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201382018		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	155	410	1	ENST00000269305.4:c.31G>A	p.Glu11Lys	p.E11K	ENST00000269305	NM_001126112.2	11	Gag/Aag																																																																															
AURKB	9212	MSKCC	GRCh37	17	8111127	8111127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370931710		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	135	346	0	ENST00000585124.1:c.80G>A	p.Arg27Gln	p.R27Q	ENST00000585124	NM_004217.3	27	cGa/cAa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39575856	39575856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs140660681		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	65	270	0	ENST00000262039.4:c.789G>T	p.Glu263Asp	p.E263D	ENST00000262039	NM_002647.2	263	gaG/gaT																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368208	45368208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	106	342	0	ENST00000262160.6:c.1394G>A	p.Ser465Asn	p.S465N	ENST00000262160	NM_005901.5	465	aGc/aAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581261	48581261	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140743238		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	32	411	0	ENST00000342988.3:c.565C>T	p.Arg189Cys	p.R189C	ENST00000342988	NM_005359.5	189	Cgt/Tgt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56409145	56409145	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1308397244		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	27	287	1	ENST00000348428.3:c.1652G>A	p.Arg551Gln	p.R551Q	ENST00000348428	NM_006785.3	551	cGa/cAa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56409195	56409195	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	56	278	0	ENST00000348428.3:c.1702G>T	p.Glu568Ter	p.E568*	ENST00000348428	NM_006785.3	568	Gaa/Taa																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61305149	61305149	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	165	477	0	ENST00000341074.5:c.977C>A	p.Ser326Tyr	p.S326Y	ENST00000341074	NM_002974.2	326	tCt/tAt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10273405	10273405	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200601847		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	116	364	1	ENST00000340748.4:c.898G>A	p.Glu300Lys	p.E300K	ENST00000340748		300	Gaa/Aaa																																																																															
STK11	6794	MSKCC	GRCh37	19	1218488	1218488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	109	387	0	ENST00000326873.7:c.363G>T	p.Glu121Asp	p.E121D	ENST00000326873	NM_000455.4	121	gaG/gaT																																																																															
CALR	811	MSKCC	GRCh37	19	13050333	13050333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	137	413	0	ENST00000316448.5:c.285C>A	p.Phe95Leu	p.F95L	ENST00000316448	NM_004343.3	95	ttC/ttA																																																																															
BRD4	23476	MSKCC	GRCh37	19	15364969	15364969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1394299823		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	89	307	0	ENST00000263377.2:c.2152G>A	p.Glu718Lys	p.E718K	ENST00000263377	NM_058243.2	718	Gaa/Aaa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619323	1619323	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761667569		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	141	581	0	ENST00000344749.5:c.1318G>A	p.Ala440Thr	p.A440T	ENST00000344749	NM_001136139.2	440	Gca/Aca																																																																															
JAK3	3718	MSKCC	GRCh37	19	17937713	17937713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752088869		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	117	423	0	ENST00000458235.1:c.3214G>A	p.Glu1072Lys	p.E1072K	ENST00000458235	NM_000215.3	1072	Gag/Aag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36217200	36217200	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751755267		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	33	369	0	ENST00000222270.7:c.3949G>A	p.Glu1317Lys	p.E1317K	ENST00000222270	NM_014727.1	1317	Gag/Aag																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45856532	45856532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201165309		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	121	455	0	ENST00000391945.4:c.1726G>A	p.Glu576Lys	p.E576K	ENST00000391945	NM_000400.3	576	Gaa/Aaa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5256125	5256125	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	83	316	0	ENST00000357368.4:c.712C>T	p.Arg238Ter	p.R238*	ENST00000357368	NM_002850.3	238	Cga/Tga																																																																															
INSR	3643	MSKCC	GRCh37	19	7267389	7267389	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767658477		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	121	364	0	ENST00000302850.5:c.619G>A	p.Glu207Lys	p.E207K	ENST00000302850	NM_000208.2	207	Gaa/Aaa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095836	178095836	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1328262363		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	131	435	0	ENST00000397062.3:c.1495C>T	p.Arg499Trp	p.R499W	ENST00000397062	NM_006164.4	499	Cgg/Tgg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190656594	190656594	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768047966		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	37	337	0	ENST00000441310.2:c.59C>T	p.Ser20Leu	p.S20L	ENST00000441310	NM_000534.4	20	tCg/tTg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190682806	190682806	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	30	298	0	ENST00000441310.2:c.482C>A	p.Thr161Asn	p.T161N	ENST00000441310	NM_000534.4	161	aCt/aAt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198273257	198273257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	33	374	0	ENST00000335508.6:c.953G>A	p.Arg318Gln	p.R318Q	ENST00000335508	NM_012433.2	318	cGa/cAa																																																																															
CASP8	841	MSKCC	GRCh37	2	202131412	202131412	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1339962485		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	152	388	0	ENST00000358485.4:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000358485	NM_001080125.1	127	cGa/cAa																																																																															
CASP8	841	MSKCC	GRCh37	2	202137487	202137487	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	89	455	0	ENST00000358485.4:c.715G>T	p.Glu239Ter	p.E239*	ENST00000358485	NM_001080125.1	239	Gaa/Taa																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736158	204736158	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs963824682		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	92	397	0	ENST00000302823.3:c.515C>T	p.Ser172Leu	p.S172L	ENST00000302823	NM_005214.4	172	tCg/tTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426687	212426687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	121	427	0	ENST00000342788.4:c.2428G>A	p.Glu810Lys	p.E810K	ENST00000342788	NM_005235.2	810	Gag/Aag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212589848	212589848	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	147	411	0	ENST00000342788.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000342788	NM_005235.2	232	Cga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812272	212812272	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	119	395	0	ENST00000342788.4:c.304T>G	p.Leu102Val	p.L102V	ENST00000342788	NM_005235.2	102	Tta/Gta																																																																															
BARD1	580	MSKCC	GRCh37	2	215593483	215593483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139785364		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	110	421	0	ENST00000260947.4:c.2251C>T	p.Arg751Trp	p.R751W	ENST00000260947	NM_000465.2	751	Cgg/Tgg																																																																															
BARD1	580	MSKCC	GRCh37	2	215645327	215645327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	106	353	0	ENST00000260947.4:c.1271G>T	p.Arg424Ile	p.R424I	ENST00000260947	NM_000465.2	424	aGa/aTa																																																																															
BARD1	580	MSKCC	GRCh37	2	215657051	215657051	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs758972589		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	53	272	0	ENST00000260947.4:c.334C>T	p.Arg112Ter	p.R112*	ENST00000260947	NM_000465.2	112	Cga/Tga																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371691	225371691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	46	381	0	ENST00000264414.4:c.913C>T	p.Arg305Cys	p.R305C	ENST00000264414	NM_003590.4	305	Cgt/Tgt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225379426	225379426	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	29	354	0	ENST00000264414.4:c.442C>T	p.Arg148Ter	p.R148*	ENST00000264414	NM_003590.4	148	Cga/Tga																																																																															
CUL3	8452	MSKCC	GRCh37	2	225422393	225422393	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1417750087		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	35	288	0	ENST00000264414.4:c.247G>A	p.Glu83Lys	p.E83K	ENST00000264414	NM_003590.4	83	Gaa/Aaa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523037	25523037	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1438813586		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	122	427	0	ENST00000264709.3:c.148C>T	p.Arg50Trp	p.R50W	ENST00000264709	NM_175629.2	50	Cgg/Tgg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965013	25965013	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs190294224		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	116	425	0	ENST00000435504.4:c.4193C>T	p.Ser1398Leu	p.S1398L	ENST00000435504		1398	tCg/tTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068357	26068357	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	55	254	0	ENST00000435504.4:c.133G>T	p.Glu45Ter	p.E45*	ENST00000435504		45	Gaa/Taa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39224174	39224174	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	30	272	0	ENST00000402219.2:c.2970C>A	p.Phe990Leu	p.F990L	ENST00000402219	NM_005633.3	990	ttC/ttA																																																																															
SOS1	6654	MSKCC	GRCh37	2	39234206	39234206	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	52	287	0	ENST00000402219.2:c.2639C>A	p.Ser880Ter	p.S880*	ENST00000402219	NM_005633.3	880	tCa/tAa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39237759	39237759	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	153	331	0	ENST00000402219.2:c.2476C>T	p.Arg826Ter	p.R826*	ENST00000402219	NM_005633.3	826	Cga/Tga																																																																															
SOS1	6654	MSKCC	GRCh37	2	39241084	39241084	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730881024		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	23	312	0	ENST00000402219.2:c.1987A>G	p.Ile663Val	p.I663V	ENST00000402219	NM_005633.3	663	Ata/Gta																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703657	47703657	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	135	358	0	ENST00000233146.2:c.2157G>T	p.Leu719Phe	p.L719F	ENST00000233146	NM_000251.2	719	ttG/ttT																																																																															
MSH6	2956	MSKCC	GRCh37	2	48028263	48028263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	134	367	0	ENST00000234420.5:c.3141G>A	p.Trp1047Ter	p.W1047*	ENST00000234420	NM_000179.2	1047	tgG/tgA																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033753	48033753	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	78	340	0	ENST00000234420.5:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000234420	NM_000179.2	1322	Gaa/Taa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	33	311	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520009		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	73	413	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61724029	61724029	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	29	318	0	ENST00000401558.2:c.873G>T	p.Met291Ile	p.M291I	ENST00000401558	NM_003400.3	291	atG/atT																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024197	31024197	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	121	468	0	ENST00000375687.4:c.3682G>T	p.Glu1228Ter	p.E1228*	ENST00000375687	NM_015338.5	1228	Gaa/Taa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31387976	31387976	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	159	358	0	ENST00000328111.2:c.1777G>T	p.Glu593Ter	p.E593*	ENST00000328111	NM_006892.3	593	Gag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714412	40714412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	124	420	0	ENST00000373198.4:c.3985G>A	p.Glu1329Lys	p.E1329K	ENST00000373198	NM_133170.3	1329	Gag/Aag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419913	41419913	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	137	450	0	ENST00000373198.4:c.408G>A	p.Trp136Ter	p.W136*	ENST00000373198	NM_133170.3	136	tgG/tgA																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265328	46265328	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	128	395	0	ENST00000371998.3:c.2198A>T	p.Glu733Val	p.E733V	ENST00000371998		733	gAg/gTg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546847	9546847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	120	482	0	ENST00000353224.5:c.1175C>T	p.Ser392Leu	p.S392L	ENST00000353224	NM_177990.2	392	tCg/tTg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624965	9624965	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	94	358	0	ENST00000353224.5:c.12G>T	p.Lys4Asn	p.K4N	ENST00000353224	NM_177990.2	4	aaG/aaT																																																																															
ERG	2078	MSKCC	GRCh37	21	39775530	39775530	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769340813		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	122	436	0	ENST00000288319.7:c.490G>A	p.Asp164Asn	p.D164N	ENST00000288319	NM_182918.3	164	Gat/Aat																																																																															
EP300	2033	MSKCC	GRCh37	22	41526007	41526007	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs201341021		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	22	255	0	ENST00000263253.7:c.1282C>T	p.Pro428Ser	p.P428S	ENST00000263253	NM_001429.3	428	Cca/Tca																																																																															
EP300	2033	MSKCC	GRCh37	22	41533773	41533773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	97	346	0	ENST00000263253.7:c.1739G>A	p.Arg580Gln	p.R580Q	ENST00000263253	NM_001429.3	580	cGa/cAa																																																																															
EP300	2033	MSKCC	GRCh37	22	41545060	41545060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	30	399	0	ENST00000263253.7:c.2260C>T	p.Arg754Cys	p.R754C	ENST00000263253	NM_001429.3	754	Cgt/Tgt																																																																															
EP300	2033	MSKCC	GRCh37	22	41565601	41565601	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	20	317	0	ENST00000263253.7:c.4267G>T	p.Glu1423Ter	p.E1423*	ENST00000263253	NM_001429.3	1423	Gaa/Taa																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119721018	119721018	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	37	374	0	ENST00000316626.5:c.157G>T	p.Glu53Ter	p.E53*	ENST00000316626		53	Gaa/Taa																																																																															
RAF1	5894	MSKCC	GRCh37	3	12647698	12647698	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	24	305	0	ENST00000251849.4:c.680+2T>C		p.X227_splice	ENST00000251849	NM_002880.3	227																																																																																
PIK3CB	5291	MSKCC	GRCh37	3	138383891	138383891	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	21	314	0	ENST00000289153.2:c.2659G>T	p.Glu887Ter	p.E887*	ENST00000289153	NM_006219.2	887	Gaa/Taa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138461575	138461575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1225812682		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	67	304	0	ENST00000289153.2:c.446G>A	p.Arg149Gln	p.R149Q	ENST00000289153	NM_006219.2	149	cGa/cAa																																																																															
ATR	545	MSKCC	GRCh37	3	142177859	142177859	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	69	333	0	ENST00000350721.4:c.7444C>A	p.Leu2482Ile	p.L2482I	ENST00000350721	NM_001184.3	2482	Ctc/Atc																																																																															
ATR	545	MSKCC	GRCh37	3	142279197	142279197	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs200968047		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	110	317	0	ENST00000350721.4:c.1449G>T	p.Lys483Asn	p.K483N	ENST00000350721	NM_001184.3	483	aaG/aaT																																																																															
ATR	545	MSKCC	GRCh37	3	142281952	142281952	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	78	283	0	ENST00000350721.4:c.293-1G>T		p.X98_splice	ENST00000350721	NM_001184.3	98																																																																																
WWTR1	25937	MSKCC	GRCh37	3	149260145	149260145	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200641813		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	36	337	1	ENST00000360632.3:c.748C>T	p.Arg250Cys	p.R250C	ENST00000360632	NM_015472.4	250	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178943818	178943818	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs199926184		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	21	298	0	ENST00000263967.3:c.2485C>A	p.Leu829Ile	p.L829I	ENST00000263967	NM_006218.2	829	Ctt/Att																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517202		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	195	379	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185167750	185167750	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	161	331	0	ENST00000265026.3:c.1073C>A	p.Ser358Tyr	p.S358Y	ENST00000265026	NM_004721.4	358	tCt/tAt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185169089	185169089	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746110965		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	131	338	0	ENST00000265026.3:c.1184G>A	p.Arg395Gln	p.R395Q	ENST00000265026	NM_004721.4	395	cGa/cAa																																																																															
BCL6	604	MSKCC	GRCh37	3	187447565	187447565	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151194132		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	58	533	0	ENST00000232014.4:c.628G>A	p.Asp210Asn	p.D210N	ENST00000232014	NM_001130845.1	210	Gat/Aat																																																																															
MYD88	4615	MSKCC	GRCh37	3	38181926	38181926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	227	444	0	ENST00000396334.3:c.550G>A	p.Asp184Asn	p.D184N	ENST00000396334	NM_002468.4	184	Gac/Aac																																																																															
SETD2	29072	MSKCC	GRCh37	3	47144891	47144891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	20	312	0	ENST00000409792.3:c.4862G>T	p.Gly1621Val	p.G1621V	ENST00000409792	NM_014159.6	1621	gGa/gTa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47155492	47155492	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	74	299	0	ENST00000409792.3:c.4589C>A	p.Ser1530Tyr	p.S1530Y	ENST00000409792	NM_014159.6	1530	tCt/tAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162109	47162109	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs748587569		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	106	389	0	ENST00000409792.3:c.4017G>T	p.Glu1339Asp	p.E1339D	ENST00000409792	NM_014159.6	1339	gaG/gaT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162426	47162426	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	118	397	0	ENST00000409792.3:c.3700G>T	p.Glu1234Ter	p.E1234*	ENST00000409792	NM_014159.6	1234	Gaa/Taa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162938	47162938	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	101	430	0	ENST00000409792.3:c.3188G>T	p.Arg1063Ile	p.R1063I	ENST00000409792	NM_014159.6	1063	aGa/aTa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164118	47164118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	123	384	0	ENST00000409792.3:c.2008G>T	p.Glu670Ter	p.E670*	ENST00000409792	NM_014159.6	670	Gaa/Taa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164366	47164366	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1299511576		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	72	354	0	ENST00000409792.3:c.1760C>A	p.Ser587Tyr	p.S587Y	ENST00000409792	NM_014159.6	587	tCt/tAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164855	47164855	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1424607930		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	117	432	0	ENST00000409792.3:c.1271G>A	p.Arg424Gln	p.R424Q	ENST00000409792	NM_014159.6	424	cGa/cAa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52582227	52582227	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1307117980		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	32	344	0	ENST00000394830.3:c.4601C>T	p.Ser1534Leu	p.S1534L	ENST00000394830	NM_018313.4	1534	tCg/tTg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	20	365	0	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620556	52620556	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	34	435	0	ENST00000394830.3:c.3197C>A	p.Pro1066His	p.P1066H	ENST00000394830	NM_018313.4	1066	cCt/cAt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643768	52643768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	146	393	0	ENST00000394830.3:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000394830	NM_018313.4	710	Cga/Tga																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021809	71021809	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	96	376	0	ENST00000318789.4:c.1549C>A	p.Leu517Ile	p.L517I	ENST00000318789	NM_032682.5	517	Ctt/Att																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799700	72799700	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1300888445		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	37	464	0	ENST00000325599.8:c.1469C>A	p.Ser490Tyr	p.S490Y	ENST00000325599	NM_018130.2	490	tCt/tAt																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73112850	73112850	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375938868		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	22	296	0	ENST00000356692.5:c.446G>A	p.Arg149Gln	p.R149Q	ENST00000356692		149	cGa/cAa																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114568	73114568	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	80	284	0	ENST00000356692.5:c.949G>T	p.Glu317Ter	p.E317*	ENST00000356692		317	Gaa/Taa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259384	89259384	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	112	436	0	ENST00000336596.2:c.528G>T	p.Lys176Asn	p.K176N	ENST00000336596	NM_005233.5	176	aaG/aaT																																																																															
TET2	54790	MSKCC	GRCh37	4	106164059	106164059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	16	283	0	ENST00000380013.4:c.3569C>A	p.Ser1190Tyr	p.S1190Y	ENST00000380013	NM_001127208.2	1190	tCt/tAt																																																																															
TET2	54790	MSKCC	GRCh37	4	106193884	106193884	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	36	387	0	ENST00000380013.4:c.4346C>A	p.Ser1449Tyr	p.S1449Y	ENST00000380013	NM_001127208.2	1449	tCt/tAt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143029297	143029297	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757219824		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	50	277	0	ENST00000262992.4:c.2323G>A	p.Glu775Lys	p.E775K	ENST00000262992	NM_001101669.1	775	Gaa/Aaa																																																																															
GAB1	2549	MSKCC	GRCh37	4	144336729	144336729	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1363184155		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	46	334	0	ENST00000262994.4:c.172C>T	p.Arg58Cys	p.R58C	ENST00000262994	NM_002039.3	58	Cgt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244184	153244184	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759610249		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	193	415	0	ENST00000281708.4:c.1973G>A	p.Arg658Gln	p.R658Q	ENST00000281708	NM_033632.3	658	cGa/cAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	32	363	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251901	153251901	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	56	380	0	ENST00000281708.4:c.1105G>T	p.Glu369Ter	p.E369*	ENST00000281708	NM_033632.3	369	Gaa/Taa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510153	187510153	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367799188		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	33	502	0	ENST00000441802.2:c.13360G>A	p.Glu4454Lys	p.E4454K	ENST00000441802	NM_005245.3	4454	Gaa/Aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517847	187517847	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202133523		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	202	448	0	ENST00000441802.2:c.12847G>A	p.Glu4283Lys	p.E4283K	ENST00000441802	NM_005245.3	4283	Gaa/Aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187525580	187525580	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	31	390	0	ENST00000441802.2:c.10499C>A	p.Ser3500Ter	p.S3500*	ENST00000441802	NM_005245.3	3500	tCa/tAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187530342	187530342	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	108	342	0	ENST00000441802.2:c.10201G>T	p.Glu3401Ter	p.E3401*	ENST00000441802	NM_005245.3	3401	Gaa/Taa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539635	187539635	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	36	416	0	ENST00000441802.2:c.8105A>C	p.Lys2702Thr	p.K2702T	ENST00000441802	NM_005245.3	2702	aAa/aCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541295	187541295	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	164	408	0	ENST00000441802.2:c.6445G>T	p.Glu2149Ter	p.E2149*	ENST00000441802	NM_005245.3	2149	Gaa/Taa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542870	187542870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	87	372	0	ENST00000441802.2:c.4870G>T	p.Glu1624Ter	p.E1624*	ENST00000441802	NM_005245.3	1624	Gaa/Taa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187554873	187554873	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1014814755		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	102	369	0	ENST00000441802.2:c.4288G>A	p.Glu1430Lys	p.E1430K	ENST00000441802	NM_005245.3	1430	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187558020	187558020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	95	391	0	ENST00000441802.2:c.3691G>A	p.Val1231Ile	p.V1231I	ENST00000441802	NM_005245.3	1231	Gtc/Atc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629296	187629296	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	134	426	0	ENST00000441802.2:c.1686G>T	p.Leu562Phe	p.L562F	ENST00000441802	NM_005245.3	562	ttG/ttT																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1918635	1918635	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	88	311	0	ENST00000382895.3:c.798C>A	p.Phe266Leu	p.F266L	ENST00000382895	NM_133330.2	266	ttC/ttA																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1941423	1941423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1189008609		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	158	352	0	ENST00000382895.3:c.1799G>A	p.Arg600Gln	p.R600Q	ENST00000382895	NM_133330.2	600	cGa/cAa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1952853	1952853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	131	403	1	ENST00000382895.3:c.1936G>A	p.Glu646Lys	p.E646K	ENST00000382895	NM_133330.2	646	Gaa/Aaa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1956968	1956968	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143360610		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	33	453	0	ENST00000382895.3:c.2419G>A	p.Ala807Thr	p.A807T	ENST00000382895	NM_133330.2	807	Gcc/Acc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139838	55139838	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1308521786		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	131	411	0	ENST00000257290.5:c.1499G>A	p.Arg500Gln	p.R500Q	ENST00000257290	NM_006206.4	500	cGa/cAa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55146636	55146636	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	93	350	0	ENST00000257290.5:c.2310G>T	p.Lys770Asn	p.K770N	ENST00000257290	NM_006206.4	770	aaG/aaT																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161380	55161380	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376544204		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	102	364	0	ENST00000257290.5:c.3211G>A	p.Asp1071Asn	p.D1071N	ENST00000257290	NM_006206.4	1071	Gac/Aac																																																																															
KDR	3791	MSKCC	GRCh37	4	55961766	55961766	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	52	281	0	ENST00000263923.4:c.2795G>T	p.Arg932Ile	p.R932I	ENST00000263923	NM_002253.2	932	aGa/aTa																																																																															
KDR	3791	MSKCC	GRCh37	4	55981193	55981193	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	75	323	0	ENST00000263923.4:c.506G>T	p.Arg169Ile	p.R169I	ENST00000263923	NM_002253.2	169	aGa/aTa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189849	66189849	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139793674		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	29	317	0	ENST00000273854.3:c.3097G>A	p.Gly1033Arg	p.G1033R	ENST00000273854	NM_004439.5	1033	Gga/Aga																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99808246	99808246	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776434815		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	65	227	0	ENST00000280892.6:c.443G>A	p.Arg148His	p.R148H	ENST00000280892	NM_001130678.1	148	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112090654	112090654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	15	278	0	ENST00000257430.4:c.67C>A	p.Leu23Ile	p.L23I	ENST00000257430	NM_000038.5	23	Ctt/Att																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	114	419	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	89	447	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175921	112175921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	163	451	0	ENST00000257430.4:c.4630G>T	p.Glu1544Ter	p.E1544*	ENST00000257430	NM_000038.5	1544	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112177901	112177901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs752654519		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	148	425	0	ENST00000257430.4:c.6610C>T	p.Arg2204Ter	p.R2204*	ENST00000257430	NM_000038.5	2204	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112178541	112178541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	101	396	0	ENST00000257430.4:c.7250C>A	p.Ser2417Tyr	p.S2417Y	ENST00000257430	NM_000038.5	2417	tCt/tAt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131911502	131911502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	65	299	0	ENST00000265335.6:c.247C>T	p.Arg83Cys	p.R83C	ENST00000265335		83	Cgt/Tgt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149501544	149501544	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs537725629		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	169	426	0	ENST00000261799.4:c.2243C>T	p.Ser748Leu	p.S748L	ENST00000261799	NM_002609.3	748	tCg/tTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637379	176637379	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	142	421	0	ENST00000439151.2:c.1979A>G	p.Asn660Ser	p.N660S	ENST00000439151	NM_022455.4	660	aAc/aGc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176665349	176665349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	41	374	0	ENST00000439151.2:c.4033C>A	p.Leu1345Ile	p.L1345I	ENST00000439151	NM_022455.4	1345	Ctt/Att																																																																															
NSD1	64324	MSKCC	GRCh37	5	176666781	176666781	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	51	277	0	ENST00000439151.2:c.4217G>T	p.Arg1406Ile	p.R1406I	ENST00000439151	NM_022455.4	1406	aGa/aTa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176710863	176710863	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1220317485		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	162	373	0	ENST00000439151.2:c.6085A>G	p.Thr2029Ala	p.T2029A	ENST00000439151	NM_022455.4	2029	Aca/Gca																																																																															
NSD1	64324	MSKCC	GRCh37	5	176722165	176722165	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	203	511	0	ENST00000439151.2:c.7796C>A	p.Ser2599Tyr	p.S2599Y	ENST00000439151	NM_022455.4	2599	tCt/tAt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31406984	31406984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	100	350	0	ENST00000344624.3:c.3923G>T	p.Arg1308Ile	p.R1308I	ENST00000344624		1308	aGa/aTa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31437388	31437388	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1303485152		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	87	351	0	ENST00000344624.3:c.2900G>T	p.Arg967Leu	p.R967L	ENST00000344624		967	cGg/cTg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31449442	31449442	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766022493		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	25	343	0	ENST00000344624.3:c.2767C>T	p.Arg923Trp	p.R923W	ENST00000344624		923	Cgg/Tgg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945092	38945092	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769767383		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	35	366	0	ENST00000357387.3:c.4712C>T	p.Ser1571Leu	p.S1571L	ENST00000357387	NM_152756.3	1571	tCg/tTg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945641	38945641	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	28	311	0	ENST00000357387.3:c.4585C>A	p.Leu1529Met	p.L1529M	ENST00000357387	NM_152756.3	1529	Ctg/Atg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950099	38950099	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757900166		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	115	433	0	ENST00000357387.3:c.3851C>T	p.Ser1284Leu	p.S1284L	ENST00000357387	NM_152756.3	1284	tCg/tTg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39002706	39002706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	76	306	0	ENST00000357387.3:c.323G>A	p.Arg108Gln	p.R108Q	ENST00000357387	NM_152756.3	108	cGa/cAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178104	56178104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	153	430	0	ENST00000399503.3:c.3077C>A	p.Ser1026Tyr	p.S1026Y	ENST00000399503	NM_005921.1	1026	tCt/tAt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522657	67522657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	161	421	0	ENST00000274335.5:c.154G>T	p.Glu52Ter	p.E52*	ENST00000274335		52	Gaa/Taa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589283	67589283	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	67	319	0	ENST00000274335.5:c.1271T>G	p.Leu424Ter	p.L424*	ENST00000274335		424	tTa/tGa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589618	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519838		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	36	273	0	ENST00000274335.5:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000274335		461	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67590457	67590457	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	47	365	0	ENST00000274335.5:c.1519G>T	p.Glu507Ter	p.E507*	ENST00000274335		507	Gaa/Taa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79952236	79952236	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1445966245		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	151	370	0	ENST00000265081.6:c.244G>A	p.Glu82Lys	p.E82K	ENST00000265081	NM_002439.4	82	Gaa/Aaa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672330	86672330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	86	315	0	ENST00000274376.6:c.2132G>A	p.Arg711Gln	p.R711Q	ENST00000274376	NM_002890.2	711	cGa/cAa																																																																															
FYN	2534	MSKCC	GRCh37	6	112015851	112015851	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	28	393	0	ENST00000368678.4:c.1090C>A	p.Leu364Ile	p.L364I	ENST00000368678		364	Ctt/Att																																																																															
FYN	2534	MSKCC	GRCh37	6	112024169	112024169	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1465963577		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	91	388	0	ENST00000368678.4:c.616C>T	p.Arg206Cys	p.R206C	ENST00000368678		206	Cgc/Tgc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117642495	117642495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs9489124		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	132	466	0	ENST00000368508.3:c.5704G>A	p.Glu1902Lys	p.E1902K	ENST00000368508	NM_002944.2	1902	Gaa/Aaa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117706977	117706977	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764959275		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	116	392	0	ENST00000368508.3:c.2173G>A	p.Asp725Asn	p.D725N	ENST00000368508	NM_002944.2	725	Gac/Aac																																																																															
ROS1	6098	MSKCC	GRCh37	6	117715410	117715410	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs769599473		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	39	340	0	ENST00000368508.3:c.1079G>T	p.Arg360Ile	p.R360I	ENST00000368508	NM_002944.2	360	aGa/aTa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117718232	117718232	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777419401		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	95	342	0	ENST00000368508.3:c.625G>A	p.Asp209Asn	p.D209N	ENST00000368508	NM_002944.2	209	Gac/Aac																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519502	137519502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	128	419	0	ENST00000367739.4:c.1136C>A	p.Ser379Tyr	p.S379Y	ENST00000367739	NM_000416.2	379	tCt/tAt																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519560	137519560	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	152	413	1	ENST00000367739.4:c.1078G>T	p.Glu360Ter	p.E360*	ENST00000367739	NM_000416.2	360	Gaa/Taa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192435	138192435	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	43	387	0	ENST00000237289.4:c.71G>T	p.Arg24Ile	p.R24I	ENST00000237289	NM_001270507.1	24	aGa/aTa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192545	138192545	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs970781981		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	55	446	0	ENST00000237289.4:c.181C>T	p.Arg61Trp	p.R61W	ENST00000237289	NM_001270507.1	61	Cgg/Tgg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196170	138196170	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs587778710		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	118	429	1	ENST00000237289.4:c.484C>T	p.Arg162Trp	p.R162W	ENST00000237289	NM_001270507.1	162	Cgg/Tgg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138198219	138198219	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763827898		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	91	319	0	ENST00000237289.4:c.812G>A	p.Arg271Gln	p.R271Q	ENST00000237289	NM_001270507.1	271	cGa/cAa																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983016	149983016	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1326200282		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	20	400	0	ENST00000253339.5:c.3242G>A	p.Arg1081Gln	p.R1081Q	ENST00000253339		1081	cGa/cAa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001374	150001374	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	101	382	0	ENST00000253339.5:c.2230C>T	p.Arg744Ter	p.R744*	ENST00000253339		744	Cga/Tga																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001394	150001394	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774100617		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	20	379	0	ENST00000253339.5:c.2210G>A	p.Arg737Gln	p.R737Q	ENST00000253339		737	cGa/cAa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001395	150001395	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	105	380	0	ENST00000253339.5:c.2209C>T	p.Arg737Ter	p.R737*	ENST00000253339		737	Cga/Tga																																																																															
LATS1	9113	MSKCC	GRCh37	6	150022982	150022982	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	58	324	0	ENST00000253339.5:c.281C>A	p.Ser94Tyr	p.S94Y	ENST00000253339		94	tCt/tAt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163749	152163749	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1207112399		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	162	393	0	ENST00000206249.3:c.470G>A	p.Arg157Gln	p.R157Q	ENST00000206249	NM_000125.3	157	cGa/cAa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157192772	157192772	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs201653711		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	24	340	0	ENST00000346085.5:c.1762G>T	p.Glu588Ter	p.E588*	ENST00000346085	NM_020732.3	588	Gaa/Taa																																																																															
E2F3	1871	MSKCC	GRCh37	6	20480168	20480168	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765868574		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	72	301	0	ENST00000346618.3:c.485G>A	p.Arg162Gln	p.R162Q	ENST00000346618	NM_001949.4	162	cGa/cAa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679780	30679780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	166	453	0	ENST00000376406.3:c.1939G>A	p.Asp647Asn	p.D647N	ENST00000376406	NM_014641.2	647	Gat/Aat																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166275	32166275	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs967436228		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	133	428	1	ENST00000375023.3:c.4679C>T	p.Ala1560Val	p.A1560V	ENST00000375023	NM_004557.3	1560	gCg/gTg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166812	32166812	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs917534864		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	120	440	0	ENST00000375023.3:c.4426C>T	p.Arg1476Ter	p.R1476*	ENST00000375023	NM_004557.3	1476	Cga/Tga																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815404	32815404	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	29	356	0	ENST00000354258.4:c.1969G>T	p.Glu657Ter	p.E657*	ENST00000354258	NM_000593.5	657	Gaa/Taa																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816896	32816896	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs1159721335		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	42	300	0	ENST00000354258.4:c.1429-1G>T		p.X477_splice	ENST00000354258	NM_000593.5	477																																																																																
TAP1	6890	MSKCC	GRCh37	6	32818189	32818189	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777683307		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	91	408	0	ENST00000354258.4:c.1336G>A	p.Glu446Lys	p.E446K	ENST00000354258	NM_000593.5	446	Gaa/Aaa																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818728	32818728	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs55955143		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	140	393	0	ENST00000354258.4:c.1223G>T	p.Trp408Leu	p.W408L	ENST00000354258	NM_000593.5	408	tGg/tTg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32819946	32819946	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	122	438	0	ENST00000354258.4:c.964G>T	p.Gly322Ter	p.G322*	ENST00000354258	NM_000593.5	322	Gga/Tga																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93968000	93968000	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	72	281	0	ENST00000369303.4:c.1927G>T	p.Glu643Ter	p.E643*	ENST00000369303	NM_004440.3	643	Gaa/Taa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93969123	93969123	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149602525		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	51	413	0	ENST00000369303.4:c.1873G>A	p.Ala625Thr	p.A625T	ENST00000369303	NM_004440.3	625	Gcc/Acc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509270	106509270	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	102	427	0	ENST00000359195.3:c.1264G>T	p.Asp422Tyr	p.D422Y	ENST00000359195	NM_002649.2	422	Gac/Tac																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106524675	106524675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	29	296	1	ENST00000359195.3:c.2836G>A	p.Asp946Asn	p.D946N	ENST00000359195	NM_002649.2	946	Gac/Aac																																																																															
MET	4233	MSKCC	GRCh37	7	116398529	116398529	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	48	364	1	ENST00000397752.3:c.2119C>A	p.Leu707Ile	p.L707I	ENST00000397752	NM_000245.2	707	Ctt/Att																																																																															
MET	4233	MSKCC	GRCh37	7	116398665	116398665	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1351264833		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	41	319	0	ENST00000397752.3:c.2255C>A	p.Ser752Tyr	p.S752Y	ENST00000397752	NM_000245.2	752	tCt/tAt																																																																															
MET	4233	MSKCC	GRCh37	7	116418997	116418997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	138	302	0	ENST00000397752.3:c.3508C>T	p.Arg1170Ter	p.R1170*	ENST00000397752	NM_000245.2	1170	Cga/Tga																																																																															
SMO	6608	MSKCC	GRCh37	7	128845479	128845479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	95	466	0	ENST00000249373.3:c.776C>T	p.Ser259Leu	p.S259L	ENST00000249373	NM_005631.4	259	tCg/tTg																																																																															
ETV1	2115	MSKCC	GRCh37	7	14027742	14027742	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	21	287	0	ENST00000405192.2:c.102C>A	p.Phe34Leu	p.F34L	ENST00000405192	NM_001163147.1	34	ttC/ttA																																																																															
BRAF	673	MSKCC	GRCh37	7	140476748	140476748	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	73	305	0	ENST00000288602.6:c.1658T>G	p.Leu553Arg	p.L553R	ENST00000288602	NM_004333.4	553	cTt/cGt																																																																															
EZH2	2146	MSKCC	GRCh37	7	148506444	148506444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	20	303	0	ENST00000320356.2:c.2068C>T	p.Arg690Cys	p.R690C	ENST00000320356	NM_004456.4	690	Cgt/Tgt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151896536	151896536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	19	294	0	ENST00000262189.6:c.4101C>A	p.Phe1367Leu	p.F1367L	ENST00000262189	NM_170606.2	1367	ttC/ttA																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346008	152346008	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139219364		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	139	414	0	ENST00000359321.1:c.562C>T	p.Arg188Cys	p.R188C	ENST00000359321	NM_005431.1	188	Cgc/Tgc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459558	50459558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	30	324	0	ENST00000331340.3:c.847C>A	p.Leu283Ile	p.L283I	ENST00000331340	NM_006060.4	283	Ctt/Att																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026397	6026397	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	60	184	0	ENST00000265849.7:c.1999G>T	p.Glu667Ter	p.E667*	ENST00000265849	NM_000535.5	667	Gag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81339547	81339547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	97	326	0	ENST00000222390.5:c.1457C>T	p.Ser486Phe	p.S486F	ENST00000222390	NM_000601.4	486	tCt/tTt																																																																															
HGF	3082	MSKCC	GRCh37	7	81392151	81392151	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	44	334	0	ENST00000222390.5:c.126C>A	p.Phe42Leu	p.F42L	ENST00000222390	NM_000601.4	42	ttC/ttA																																																																															
HGF	3082	MSKCC	GRCh37	7	81392173	81392173	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs758790721		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	14	304	0	ENST00000222390.5:c.104G>T	p.Arg35Ile	p.R35I	ENST00000222390	NM_000601.4	35	aGa/aTa																																																																															
LYN	4067	MSKCC	GRCh37	8	56864653	56864653	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759824481		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	79	344	0	ENST00000519728.1:c.616G>A	p.Asp206Asn	p.D206N	ENST00000519728	NM_002350.3	206	Gac/Aac																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931805	68931805	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	21	346	0	ENST00000288368.4:c.235G>T	p.Asp79Tyr	p.D79Y	ENST00000288368	NM_024870.2	79	Gac/Tac																																																																															
PREX2	80243	MSKCC	GRCh37	8	69011978	69011978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	78	369	0	ENST00000288368.4:c.2615C>A	p.Ser872Tyr	p.S872Y	ENST00000288368	NM_024870.2	872	tCt/tAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020361	69020361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	89	328	1	ENST00000288368.4:c.2733G>T	p.Lys911Asn	p.K911N	ENST00000288368	NM_024870.2	911	aaG/aaT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020534	69020534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	107	356	0	ENST00000288368.4:c.2906C>A	p.Ser969Tyr	p.S969Y	ENST00000288368	NM_024870.2	969	tCt/tAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021782	69021782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	106	352	0	ENST00000288368.4:c.3070G>T	p.Asp1024Tyr	p.D1024Y	ENST00000288368	NM_024870.2	1024	Gac/Tac																																																																															
NBN	4683	MSKCC	GRCh37	8	90971022	90971022	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	99	369	0	ENST00000265433.3:c.1055T>G	p.Leu352Arg	p.L352R	ENST00000265433	NM_002485.4	352	cTa/cGa																																																																															
NBN	4683	MSKCC	GRCh37	8	90983450	90983450	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202250		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	80	289	0	ENST00000265433.3:c.653G>T	p.Arg218Ile	p.R218I	ENST00000265433	NM_002485.4	218	aGa/aTa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891367	101891367	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	25	342	0	ENST00000374994.4:c.328G>T	p.Glu110Ter	p.E110*	ENST00000374994	NM_004612.2	110	Gaa/Taa																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127915951	127915951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	95	396	0	ENST00000373547.4:c.530G>A	p.Arg177Gln	p.R177Q	ENST00000373547	NM_002721.4	177	cGa/cAa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797300	135797300	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs118203402		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	43	394	0	ENST00000298552.3:c.569G>A	p.Arg190His	p.R190H	ENST00000298552	NM_001162426.1	190	cGc/cAc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2123890	2123890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	112	402	0	ENST00000349721.2:c.3934C>T	p.Arg1312Cys	p.R1312C	ENST00000349721	NM_003070.3	1312	Cgt/Tgt																																																																															
TEK	7010	MSKCC	GRCh37	9	27228298	27228298	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	84	297	0	ENST00000380036.4:c.3295C>T	p.Arg1099Ter	p.R1099*	ENST00000380036	NM_000459.3	1099	Cga/Tga																																																																															
JAK2	3717	MSKCC	GRCh37	9	5066740	5066740	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777015472		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	46	301	0	ENST00000381652.3:c.1277G>A	p.Arg426Gln	p.R426Q	ENST00000381652	NM_004972.3	426	cGa/cAa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5123095	5123095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	28	323	2	ENST00000381652.3:c.3151A>G	p.Ile1051Val	p.I1051V	ENST00000381652	NM_004972.3	1051	Att/Gtt																																																																															
CD274	29126	MSKCC	GRCh37	9	5457400	5457400	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1480335907		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	108	342	0	ENST00000381577.3:c.374G>A	p.Arg125Gln	p.R125Q	ENST00000381577	NM_014143.3	125	cGa/cAa																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80412494	80412494	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	33	383	0	ENST00000286548.4:c.547C>T	p.Arg183Ter	p.R183*	ENST00000286548	NM_002072.3	183	Cga/Tga																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80430668	80430668	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	25	219	0	ENST00000286548.4:c.340C>T	p.Arg114Ter	p.R114*	ENST00000286548	NM_002072.3	114	Cga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8339000	8339000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	102	352	0	ENST00000356435.5:c.5301G>T	p.Gln1767His	p.Q1767H	ENST00000356435		1767	caG/caT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8471055	8471055	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	32	354	0	ENST00000356435.5:c.3444G>T	p.Lys1148Asn	p.K1148N	ENST00000356435		1148	aaG/aaT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504401	8504401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757922864		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	27	363	0	ENST00000356435.5:c.1682G>A	p.Arg561Gln	p.R561Q	ENST00000356435		561	cGa/cAa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8633406	8633406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	95	350	0	ENST00000356435.5:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000356435		88	cGg/cAg																																																																															
FANCC	2176	MSKCC	GRCh37	9	97912218	97912218	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374176091		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	157	327	0	ENST00000289081.3:c.673G>A	p.Glu225Lys	p.E225K	ENST00000289081	NM_000136.2	225	Gag/Aag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98240363	98240363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	159	441	0	ENST00000331920.6:c.1321C>T	p.Arg441Cys	p.R441C	ENST00000331920	NM_000264.3	441	Cgc/Tgc																																																																															
XIAP	331	MSKCC	GRCh37	X	123020225	123020225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	50	414	0	ENST00000355640.3:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000355640		238	cGa/cAa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123200218	123200218	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764726360		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	43	336	0	ENST00000218089.9:c.2197G>A	p.Ala733Thr	p.A733T	ENST00000218089	NM_001042749.1	733	Gca/Aca																																																																															
STAG2	10735	MSKCC	GRCh37	X	123217305	123217305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	47	337	0	ENST00000218089.9:c.2959C>T	p.Pro987Ser	p.P987S	ENST00000218089	NM_001042749.1	987	Ccg/Tcg																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15808651	15808651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	100	344	0	ENST00000307771.7:c.33G>T	p.Glu11Asp	p.E11D	ENST00000307771	NM_005089.3	11	gaG/gaT																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921472	39921472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	150	375	1	ENST00000378444.4:c.4348C>T	p.Pro1450Ser	p.P1450S	ENST00000378444	NM_001123385.1	1450	Ccg/Tcg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44732866	44732866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	107	366	0	ENST00000377967.4:c.69G>T	p.Lys23Asn	p.K23N	ENST00000377967	NM_021140.2	23	aaG/aaT																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918695	44918695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746746824		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	101	358	0	ENST00000377967.4:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000377967	NM_021140.2	393	cGa/cAa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44921917	44921917	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	27	243	0	ENST00000377967.4:c.1451G>T	p.Arg484Ile	p.R484I	ENST00000377967	NM_021140.2	484	aGa/aTa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44950000	44950000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	43	329	0	ENST00000377967.4:c.3769G>A	p.Glu1257Lys	p.E1257K	ENST00000377967	NM_021140.2	1257	Gaa/Aaa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53240738	53240738	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	102	366	0	ENST00000375401.3:c.1342G>T	p.Glu448Ter	p.E448*	ENST00000375401	NM_004187.3	448	Gaa/Taa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411783	63411783	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	161	470	0	ENST00000330258.3:c.1384G>T	p.Glu462Ter	p.E462*	ENST00000330258	NM_152424.3	462	Gaa/Taa																																																																															
AR	367	MSKCC	GRCh37	X	66905935	66905935	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1218564193		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	68	359	0	ENST00000374690.3:c.1852C>T	p.Arg618Trp	p.R618W	ENST00000374690	NM_000044.3	618	Cgg/Tgg																																																																															
ATRX	546	MSKCC	GRCh37	X	76938995	76938995	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs886044898		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	142	410	0	ENST00000373344.5:c.1753G>T	p.Glu585Ter	p.E585*	ENST00000373344	NM_000489.3	585	Gaa/Taa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11307769	11307769	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	108	440	0	ENST00000361445.4:c.1138T>G	p.Cys380Gly	p.C380G	ENST00000361445	NM_004958.3	380	Tgc/Ggc																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150900404	150900404	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	116	423	0	ENST00000271640.5:c.214G>T	p.Glu72Ter	p.E72*	ENST00000271640	NM_001145415.1	72	Gaa/Taa																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150915371	150915371	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	41	397	0	ENST00000271640.5:c.717G>T	p.Lys239Asn	p.K239N	ENST00000271640	NM_001145415.1	239	aaG/aaT																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150919389	150919389	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	38	428	0	ENST00000271640.5:c.1168C>T	p.Arg390Ter	p.R390*	ENST00000271640	NM_001145415.1	390	Cga/Tga																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150921721	150921721	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147485893		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	34	410	0	ENST00000271640.5:c.1391C>T	p.Ala464Val	p.A464V	ENST00000271640	NM_001145415.1	464	gCt/gTt																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150923389	150923389	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	39	403	0	ENST00000271640.5:c.2036T>G	p.Ile679Ser	p.I679S	ENST00000271640	NM_001145415.1	679	aTt/aGt																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150931691	150931691	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	165	372	0	ENST00000271640.5:c.2368A>C	p.Asn790His	p.N790H	ENST00000271640	NM_001145415.1	790	Aac/Cac																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150931706	150931706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	105	391	0	ENST00000271640.5:c.2383C>T	p.Arg795Trp	p.R795W	ENST00000271640	NM_001145415.1	795	Cgg/Tgg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936156	150936156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	111	421	0	ENST00000271640.5:c.3608G>T	p.Gly1203Val	p.G1203V	ENST00000271640	NM_001145415.1	1203	gGc/gTc																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936742	150936742	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	45	406	0	ENST00000271640.5:c.3778G>T	p.Glu1260Ter	p.E1260*	ENST00000271640	NM_001145415.1	1260	Gaa/Taa																																																																															
SDHC	6391	MSKCC	GRCh37	1	161332138	161332138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	64	253	0	ENST00000367975.2:c.425G>A	p.Gly142Asp	p.G142D	ENST00000367975	NM_003001.3	142	gGc/gAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259499	16259499	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1438253970		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	38	501	0	ENST00000375759.3:c.6764C>T	p.Ala2255Val	p.A2255V	ENST00000375759	NM_015001.2	2255	gCg/gTg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162743304	162743304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	69	375	0	ENST00000367921.3:c.1774G>T	p.Asp592Tyr	p.D592Y	ENST00000367921	NM_006182.2	592	Gat/Tat																																																																															
SDHB	6390	MSKCC	GRCh37	1	17350548	17350548	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	37	399	0	ENST00000375499.3:c.562C>A	p.Leu188Ile	p.L188I	ENST00000375499	NM_003000.2	188	Ctc/Atc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175956135	175956135	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	35	350	0	ENST00000367669.3:c.2077G>T	p.Glu693Ter	p.E693*	ENST00000367669	NM_022457.5	693	Gaa/Taa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176118177	176118177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	22	299	0	ENST00000367669.3:c.796G>T	p.Glu266Ter	p.E266*	ENST00000367669	NM_022457.5	266	Gaa/Taa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176118186	176118186	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	23	305	0	ENST00000367669.3:c.787A>C	p.Ile263Leu	p.I263L	ENST00000367669	NM_022457.5	263	Att/Ctt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176153803	176153803	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	17	221	0	ENST00000367669.3:c.433G>T	p.Glu145Ter	p.E145*	ENST00000367669	NM_022457.5	145	Gaa/Taa																																																																															
MDM4	4194	MSKCC	GRCh37	1	204501345	204501345	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	30	307	0	ENST00000367182.3:c.314A>C	p.Asn105Thr	p.N105T	ENST00000367182	NM_001278516.1	105	aAt/aCt																																																																															
IL10	3586	MSKCC	GRCh37	1	206943198	206943198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	104	389	0	ENST00000423557.1:c.420G>T	p.Glu140Asp	p.E140D	ENST00000423557	NM_000572.2	140	gaG/gaT																																																																															
CDC42	998	MSKCC	GRCh37	1	22417975	22417975	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	48	128	0	ENST00000344548.3:c.541G>T	p.Glu181Ter	p.E181*	ENST00000344548	NM_001039802.1	181	Gaa/Taa																																																																															
FH	2271	MSKCC	GRCh37	1	241672037	241672037	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	24	293	0	ENST00000366560.3:c.604G>T	p.Glu202Ter	p.E202*	ENST00000366560	NM_000143.3	202	Gaa/Taa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243727105	243727105	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	51	315	0	ENST00000263826.5:c.865G>T	p.Asp289Tyr	p.D289Y	ENST00000263826	NM_005465.4	289	Gat/Tat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106736	27106736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	137	471	0	ENST00000324856.7:c.6347G>A	p.Arg2116Lys	p.R2116K	ENST00000324856	NM_006015.4	2116	aGa/aAa																																																																															
STK40	83931	MSKCC	GRCh37	1	36807418	36807418	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754087375		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	40	374	0	ENST00000373129.3:c.1246G>A	p.Asp416Asn	p.D416N	ENST00000373129	NM_032017.1	416	Gac/Aac																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46511761	46511761	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	51	247	0	ENST00000262741.5:c.1017-1G>T		p.X339_splice	ENST00000262741	NM_003629.3	339																																																																																
RAD54L	8438	MSKCC	GRCh37	1	46736350	46736350	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	94	359	0	ENST00000371975.4:c.1062G>T	p.Lys354Asn	p.K354N	ENST00000371975	NM_003579.3	354	aaG/aaT																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439934	51439934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	89	342	0	ENST00000262662.1:c.499C>A	p.Leu167Ile	p.L167I	ENST00000262662		167	Ctt/Att																																																																															
JAK1	3716	MSKCC	GRCh37	1	65335029	65335029	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	109	361	0	ENST00000342505.4:c.612G>T	p.Lys204Asn	p.K204N	ENST00000342505	NM_002227.2	204	aaG/aaT																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78422349	78422349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	30	386	0	ENST00000370768.2:c.1613C>T	p.Ala538Val	p.A538V	ENST00000370768	NM_003902.3	538	gCt/gTt																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073329	8073329	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	42	386	0	ENST00000377482.5:c.1330A>C	p.Lys444Gln	p.K444Q	ENST00000377482	NM_018948.3	444	Aaa/Caa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775954	9775954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	125	491	0	ENST00000377346.4:c.418C>T	p.Arg140Cys	p.R140C	ENST00000377346	NM_005026.3	140	Cgc/Tgc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63819011	63819011	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	87	247	0	ENST00000279873.7:c.1058G>A	p.Trp353Ter	p.W353*	ENST00000279873	NM_032199.2	353	tGg/tAg																																																																															
TET1	80312	MSKCC	GRCh37	10	70426957	70426957	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	119	402	0	ENST00000373644.4:c.4617G>T	p.Glu1539Asp	p.E1539D	ENST00000373644	NM_030625.2	1539	gaG/gaT																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690823	89690823	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	12	242	0	ENST00000371953.3:c.230A>C	p.Asp77Ala	p.D77A	ENST00000371953	NM_000314.4	77	gAc/gCc																																																																															
PGR	5241	MSKCC	GRCh37	11	100909965	100909965	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	20	355	0	ENST00000325455.5:c.2684T>G	p.Phe895Cys	p.F895C	ENST00000325455	NM_001202474.3	895	tTt/tGt																																																																															
PGR	5241	MSKCC	GRCh37	11	100922267	100922267	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	42	334	0	ENST00000325455.5:c.2245A>G	p.Thr749Ala	p.T749A	ENST00000325455	NM_001202474.3	749	Act/Gct																																																																															
CTR9	9646	MSKCC	GRCh37	11	10786234	10786234	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	101	358	0	ENST00000361367.2:c.1553A>C	p.Lys518Thr	p.K518T	ENST00000361367	NM_014633.3	518	aAa/aCa																																																																															
CTR9	9646	MSKCC	GRCh37	11	10794137	10794137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775426922		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	120	358	0	ENST00000361367.2:c.2515C>T	p.Arg839Trp	p.R839W	ENST00000361367	NM_014633.3	839	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108153551	108153551	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	74	329	0	ENST00000278616.4:c.3691T>G	p.Leu1231Val	p.L1231V	ENST00000278616	NM_000051.3	1231	Tta/Gta																																																																															
ATM	472	MSKCC	GRCh37	11	108199845	108199845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	93	357	0	ENST00000278616.4:c.7187C>A	p.Thr2396Asn	p.T2396N	ENST00000278616	NM_000051.3	2396	aCt/aAt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343074	118343074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	110	407	0	ENST00000534358.1:c.1200G>T	p.Lys400Asn	p.K400N	ENST00000534358	NM_005933.3	400	aaG/aaT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118359467	118359467	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	87	345	0	ENST00000534358.1:c.4471G>T	p.Ala1491Ser	p.A1491S	ENST00000534358	NM_005933.3	1491	Gct/Tct																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118365015	118365015	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	36	348	0	ENST00000534358.1:c.5191G>T	p.Asp1731Tyr	p.D1731Y	ENST00000534358	NM_005933.3	1731	Gat/Tat																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118365039	118365039	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	77	383	0	ENST00000534358.1:c.5215G>T	p.Ala1739Ser	p.A1739S	ENST00000534358	NM_005933.3	1739	Gca/Tca																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118372481	118372481	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	50	467	0	ENST00000534358.1:c.6414T>G	p.Tyr2138Ter	p.Y2138*	ENST00000534358	NM_005933.3	2138	taT/taG																																																																															
CBL	867	MSKCC	GRCh37	11	119103391	119103391	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	70	307	0	ENST00000264033.4:c.429G>T	p.Glu143Asp	p.E143D	ENST00000264033	NM_005188.3	143	gaG/gaT																																																																															
CBL	867	MSKCC	GRCh37	11	119149281	119149281	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	107	411	0	ENST00000264033.4:c.1289T>G	p.Val430Gly	p.V430G	ENST00000264033	NM_005188.3	430	gTg/gGg																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125497597	125497597	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	48	334	0	ENST00000428830.2:c.161A>C	p.Lys54Thr	p.K54T	ENST00000428830	NM_001114121.2	54	aAa/aCa																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205131	61205131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	28	338	0	ENST00000301761.2:c.71C>A	p.Pro24His	p.P24H	ENST00000301761	NM_017841.2	24	cCt/cAt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625146	69625146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	100	410	0	ENST00000334134.2:c.647G>T	p.Ser216Ile	p.S216I	ENST00000334134	NM_005247.2	216	aGc/aTc																																																																															
LMO1	4004	MSKCC	GRCh37	11	8252052	8252052	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	143	410	0	ENST00000335790.3:c.26-1G>T		p.X9_splice	ENST00000335790	NM_002315.2	9																																																																																
EED	8726	MSKCC	GRCh37	11	85975291	85975291	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	101	316	0	ENST00000263360.6:c.712G>T	p.Glu238Ter	p.E238*	ENST00000263360	NM_003797.3	238	Gaa/Taa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94201053	94201053	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	25	296	0	ENST00000323929.3:c.1024G>T	p.Glu342Ter	p.E342*	ENST00000323929	NM_005591.3	342	Gaa/Taa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120706	115120706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	207	472	0	ENST00000257566.3:c.300G>T	p.Glu100Asp	p.E100D	ENST00000257566	NM_016569.3	100	gaG/gaT																																																																															
SETD8	387893	MSKCC	GRCh37	12	123875179	123875179	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	153	290	0	ENST00000330479.4:c.135G>T	p.Glu45Asp	p.E45D	ENST00000330479	NM_020382.3	45	gaG/gaT																																																																															
POLE	5426	MSKCC	GRCh37	12	133244232	133244232	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	216	415	0	ENST00000320574.5:c.2176T>G	p.Tyr726Asp	p.Y726D	ENST00000320574	NM_006231.2	726	Tac/Gac																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435180	18435180	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	53	428	0	ENST00000266497.5:c.165G>T	p.Glu55Asp	p.E55D	ENST00000266497		55	gaG/gaT																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18499658	18499658	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	68	424	0	ENST00000266497.5:c.1513T>G	p.Phe505Val	p.F505V	ENST00000266497		505	Ttt/Gtt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18800927	18800927	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	44	376	0	ENST00000266497.5:c.4303G>T	p.Glu1435Ter	p.E1435*	ENST00000266497		1435	Gaa/Taa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21639467	21639467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	21	258	0	ENST00000421138.2:c.447G>A	p.Met149Ile	p.M149I	ENST00000421138		149	atG/atA																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427561	427561	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	31	421	0	ENST00000399788.2:c.2608G>T	p.Asp870Tyr	p.D870Y	ENST00000399788	NM_001042603.1	870	Gat/Tat																																																																															
KDM5A	5927	MSKCC	GRCh37	12	443466	443466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	37	405	0	ENST00000399788.2:c.1431C>A	p.Phe477Leu	p.F477L	ENST00000399788	NM_001042603.1	477	ttC/ttA																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244748	46244748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	136	485	0	ENST00000334344.6:c.2842C>A	p.Leu948Ile	p.L948I	ENST00000334344	NM_152641.2	948	Ctt/Att																																																																															
ARID2	196528	MSKCC	GRCh37	12	46254639	46254639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	40	357	0	ENST00000334344.6:c.4829C>T	p.Ser1610Phe	p.S1610F	ENST00000334344	NM_152641.2	1610	tCt/tTt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287487	46287487	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	23	275	0	ENST00000334344.6:c.5346T>G	p.Tyr1782Ter	p.Y1782*	ENST00000334344	NM_152641.2	1782	taT/taG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425849	49425849	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	146	489	0	ENST00000301067.7:c.12639C>A	p.His4213Gln	p.H4213Q	ENST00000301067	NM_003482.3	4213	caC/caA																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50488244	50488244	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	81	330	0	ENST00000394963.4:c.1158G>T	p.Lys386Asn	p.K386N	ENST00000394963	NM_003076.4	386	aaG/aaT																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489459	56489459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	34	321	0	ENST00000267101.3:c.1924C>A	p.Leu642Met	p.L642M	ENST00000267101	NM_001982.3	642	Ctg/Atg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864855	57864855	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	148	565	0	ENST00000228682.2:c.2332G>A	p.Glu778Lys	p.E778K	ENST00000228682	NM_005269.2	778	Gaa/Aaa																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233546	69233546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	56	430	0	ENST00000462284.1:c.1411G>A	p.Ala471Thr	p.A471T	ENST00000462284	NM_002392.5	471	Gca/Aca																																																																															
CDK8	1024	MSKCC	GRCh37	13	26927893	26927893	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	62	337	0	ENST00000381527.3:c.332A>G	p.His111Arg	p.H111R	ENST00000381527	NM_001260.1	111	cAc/cGc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26967518	26967518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	66	316	0	ENST00000381527.3:c.661G>T	p.Gly221Trp	p.G221W	ENST00000381527	NM_001260.1	221	Ggg/Tgg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001910	29001910	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	119	315	1	ENST00000282397.4:c.1255A>G	p.Thr419Ala	p.T419A	ENST00000282397	NM_002019.4	419	Act/Gct																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012407	29012407	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	98	348	0	ENST00000282397.4:c.464T>C	p.Val155Ala	p.V155A	ENST00000282397	NM_002019.4	155	gTc/gCc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912499	32912499	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	58	378	0	ENST00000380152.3:c.4007T>G	p.Phe1336Cys	p.F1336C	ENST00000380152		1336	tTt/tGt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913564	32913564	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	27	440	0	ENST00000380152.3:c.5072A>C	p.Lys1691Thr	p.K1691T	ENST00000380152		1691	aAa/aCa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953640	32953640	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	28	400	0	ENST00000380152.3:c.8941G>T	p.Glu2981Ter	p.E2981*	ENST00000380152		2981	Gaa/Taa																																																																															
RB1	5925	MSKCC	GRCh37	13	48934220	48934220	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	93	303	0	ENST00000267163.4:c.675T>G	p.Tyr225Ter	p.Y225*	ENST00000267163	NM_000321.2	225	taT/taG																																																																															
RB1	5925	MSKCC	GRCh37	13	48937061	48937061	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	183	316	0	ENST00000267163.4:c.829C>A	p.Leu277Ile	p.L277I	ENST00000267163	NM_000321.2	277	Ctc/Atc																																																																															
RB1	5925	MSKCC	GRCh37	13	48942677	48942677	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	36	241	0	ENST00000267163.4:c.1064G>T	p.Arg355Ile	p.R355I	ENST00000267163	NM_000321.2	355	aGa/aTa																																																																															
RB1	5925	MSKCC	GRCh37	13	49050934	49050934	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	88	354	0	ENST00000267163.4:c.2618A>C	p.Lys873Thr	p.K873T	ENST00000267163	NM_000321.2	873	aAa/aCa																																																																															
RB1	5925	MSKCC	GRCh37	13	49050937	49050937	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	51	350	0	ENST00000267163.4:c.2621A>G	p.Lys874Arg	p.K874R	ENST00000267163	NM_000321.2	874	aAa/aGa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73352359	73352359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	64	357	0	ENST00000377767.4:c.546G>T	p.Glu182Asp	p.E182D	ENST00000377767	NM_014953.3	182	gaG/gaT																																																																															
TSHR	7253	MSKCC	GRCh37	14	81606141	81606141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	107	455	0	ENST00000298171.2:c.811C>T	p.His271Tyr	p.H271Y	ENST00000298171	NM_000369.2	271	Cac/Tac																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569720	95569720	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766732310		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	112	444	0	ENST00000343455.3:c.4013C>T	p.Ala1338Val	p.A1338V	ENST00000343455	NM_177438.2	1338	gCg/gTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95596406	95596406	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	31	303	0	ENST00000343455.3:c.562G>T	p.Glu188Ter	p.E188*	ENST00000343455	NM_177438.2	188	Gaa/Taa																																																																															
RAD51	5888	MSKCC	GRCh37	15	40991033	40991033	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	92	316	0	ENST00000267868.3:c.77C>A	p.Ser26Ter	p.S26*	ENST00000267868	NM_002875.4	26	tCa/tAa																																																																															
MGA	23269	MSKCC	GRCh37	15	41961625	41961625	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	91	453	0	ENST00000219905.7:c.533A>G	p.Lys178Arg	p.K178R	ENST00000219905	NM_001164273.1	178	aAa/aGa																																																																															
MGA	23269	MSKCC	GRCh37	15	41988696	41988696	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	110	395	0	ENST00000219905.7:c.1488G>T	p.Lys496Asn	p.K496N	ENST00000219905	NM_001164273.1	496	aaG/aaT																																																																															
MGA	23269	MSKCC	GRCh37	15	41988907	41988907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	38	381	0	ENST00000219905.7:c.1699G>A	p.Asp567Asn	p.D567N	ENST00000219905	NM_001164273.1	567	Gac/Aac																																																																															
MGA	23269	MSKCC	GRCh37	15	42026747	42026747	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	59	336	0	ENST00000219905.7:c.3871A>C	p.Lys1291Gln	p.K1291Q	ENST00000219905	NM_001164273.1	1291	Aaa/Caa																																																																															
MGA	23269	MSKCC	GRCh37	15	42042007	42042007	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	50	450	0	ENST00000219905.7:c.6202G>T	p.Glu2068Ter	p.E2068*	ENST00000219905	NM_001164273.1	2068	Gaa/Taa																																																																															
MGA	23269	MSKCC	GRCh37	15	42042357	42042357	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	150	471	0	ENST00000219905.7:c.6552G>T	p.Arg2184Ser	p.R2184S	ENST00000219905	NM_001164273.1	2184	agG/agT																																																																															
USP8	9101	MSKCC	GRCh37	15	50731298	50731298	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	79	263	0	ENST00000307179.4:c.28G>T	p.Glu10Ter	p.E10*	ENST00000307179		10	Gaa/Taa																																																																															
USP8	9101	MSKCC	GRCh37	15	50789339	50789339	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	99	343	0	ENST00000307179.4:c.2949T>G	p.Phe983Leu	p.F983L	ENST00000307179		983	ttT/ttG																																																																															
USP8	9101	MSKCC	GRCh37	15	50790857	50790857	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	39	172	0	ENST00000307179.4:c.3103C>A	p.Leu1035Ile	p.L1035I	ENST00000307179		1035	Ctt/Att																																																																															
IDH2	3418	MSKCC	GRCh37	15	90630384	90630384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	46	445	0	ENST00000330062.3:c.927G>T	p.Lys309Asn	p.K309N	ENST00000330062	NM_002168.2	309	aaG/aaT																																																																															
BLM	641	MSKCC	GRCh37	15	91347404	91347404	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	58	359	0	ENST00000355112.3:c.3566T>A	p.Phe1189Tyr	p.F1189Y	ENST00000355112	NM_000057.2	1189	tTt/tAt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467895	99467895	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	106	401	0	ENST00000268035.6:c.2764T>G	p.Phe922Val	p.F922V	ENST00000268035	NM_000875.3	922	Ttc/Gtc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273936	10273936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	124	414	0	ENST00000330684.3:c.333G>T	p.Gln111His	p.Q111H	ENST00000330684	NM_001134407.1	111	caG/caT																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14022063	14022063	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	11	338	0	ENST00000311895.7:c.763G>T	p.Glu255Ter	p.E255*	ENST00000311895	NM_005236.2	255	Gaa/Taa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029335	14029335	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	138	465	0	ENST00000311895.7:c.1546C>T	p.Arg516Ter	p.R516*	ENST00000311895	NM_005236.2	516	Cga/Tga																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646320	23646320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	35	372	0	ENST00000261584.4:c.1547G>T	p.Arg516Ile	p.R516I	ENST00000261584	NM_024675.3	516	aGa/aTa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646717	23646717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	148	411	0	ENST00000261584.4:c.1150G>A	p.Glu384Lys	p.E384K	ENST00000261584	NM_024675.3	384	Gaa/Aaa																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2645794	2645794	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	94	280	0	ENST00000342085.4:c.1344G>A	p.Trp448Ter	p.W448*	ENST00000342085	NM_002613.4	448	tgG/tgA																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658816	3658816	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	123	394	0	ENST00000294008.3:c.150C>A	p.Asp50Glu	p.D50E	ENST00000294008	NM_032444.2	50	gaC/gaA																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777781	3777781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	34	457	0	ENST00000262367.5:c.7267G>A	p.Glu2423Lys	p.E2423K	ENST00000262367	NM_004380.2	2423	Gaa/Aaa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783901	50783901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	131	465	0	ENST00000398568.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000398568	NM_001042412.1	98	Gag/Aag																																																																															
CYLD	1540	MSKCC	GRCh37	16	50830358	50830358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	38	385	0	ENST00000398568.2:c.2801G>A	p.Arg934Lys	p.R934K	ENST00000398568	NM_001042412.1	934	aGa/aAa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56792538	56792538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	143	376	0	ENST00000308159.5:c.268C>A	p.Leu90Ile	p.L90I	ENST00000308159	NM_014669.4	90	Ctt/Att																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645019	67645019	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	146	462	0	ENST00000264010.4:c.284T>G	p.Ile95Ser	p.I95S	ENST00000264010	NM_006565.3	95	aTt/aGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68855960	68855960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	55	375	0	ENST00000261769.5:c.1768G>T	p.Asp590Tyr	p.D590Y	ENST00000261769	NM_004360.3	590	Gac/Tac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830920	72830920	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	44	534	0	ENST00000268489.5:c.5661A>C	p.Lys1887Asn	p.K1887N	ENST00000268489	NM_006885.3	1887	aaA/aaC																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81916929	81916929	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	99	428	0	ENST00000359376.3:c.748C>A	p.Leu250Ile	p.L250I	ENST00000359376	NM_002661.3	250	Ctc/Atc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351569	89351569	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	123	451	0	ENST00000301030.4:c.1381G>T	p.Glu461Ter	p.E461*	ENST00000301030	NM_001256183.1	461	Gaa/Taa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858603	9858603	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	154	472	0	ENST00000330684.3:c.2798A>G	p.Asp933Gly	p.D933G	ENST00000330684	NM_001134407.1	933	gAc/gGc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9984926	9984926	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	23	307	0	ENST00000330684.3:c.1039G>T	p.Asp347Tyr	p.D347Y	ENST00000330684	NM_001134407.1	347	Gac/Tac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15935783	15935783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	116	336	0	ENST00000268712.3:c.7150C>A	p.Pro2384Thr	p.P2384T	ENST00000268712	NM_006311.3	2384	Cct/Act																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004750	16004750	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	119	440	0	ENST00000268712.3:c.2504A>C	p.Lys835Thr	p.K835T	ENST00000268712	NM_006311.3	835	aAa/aCa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16049752	16049752	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	86	337	0	ENST00000268712.3:c.1020A>C	p.Glu340Asp	p.E340D	ENST00000268712	NM_006311.3	340	gaA/gaC																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16055291	16055291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	14	252	0	ENST00000268712.3:c.811G>T	p.Asp271Tyr	p.D271Y	ENST00000268712	NM_006311.3	271	Gat/Tat																																																																															
NF1	4763	MSKCC	GRCh37	17	29556975	29556975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	44	209	0	ENST00000358273.4:c.2973G>T	p.Met991Ile	p.M991I	ENST00000358273	NM_001042492.2	991	atG/atT																																																																															
NF1	4763	MSKCC	GRCh37	17	29665770	29665770	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	62	296	0	ENST00000358273.4:c.6868C>A	p.Leu2290Met	p.L2290M	ENST00000358273	NM_001042492.2	2290	Ctg/Atg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30323821	30323821	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	39	286	0	ENST00000322652.5:c.1799T>G	p.Ile600Ser	p.I600S	ENST00000322652	NM_015355.2	600	aTt/aGt																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428330	33428330	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140285068		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	43	447	0	ENST00000335858.7:c.457G>A	p.Gly153Arg	p.G153R	ENST00000335858	NM_133629.2	153	Gga/Aga																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33433497	33433497	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	92	351	0	ENST00000335858.7:c.148G>T	p.Glu50Ter	p.E50*	ENST00000335858	NM_133629.2	50	Gaa/Taa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37884261	37884261	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	30	380	0	ENST00000269571.5:c.3732G>T	p.Glu1244Asp	p.E1244D	ENST00000269571		1244	gaG/gaT																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362513	40362513	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	138	345	0	ENST00000293328.3:c.1683G>T	p.Glu561Asp	p.E561D	ENST00000293328	NM_012448.3	561	gaG/gaT																																																																															
BRCA1	672	MSKCC	GRCh37	17	41223084	41223084	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	114	471	0	ENST00000357654.3:c.4847C>A	p.Ala1616Asp	p.A1616D	ENST00000357654	NM_007294.3	1616	gCt/gAt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245990	41245990	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	94	412	0	ENST00000357654.3:c.1558A>G	p.Lys520Glu	p.K520E	ENST00000357654	NM_007294.3	520	Aaa/Gaa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246773	41246773	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	110	419	0	ENST00000357654.3:c.775G>T	p.Glu259Ter	p.E259*	ENST00000357654	NM_007294.3	259	Gaa/Taa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47679291	47679291	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	37	369	0	ENST00000347630.2:c.916C>A	p.Leu306Ile	p.L306I	ENST00000347630	NM_001007230.1	306	Ctc/Atc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58725346	58725346	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	101	362	0	ENST00000305921.3:c.920A>C	p.Lys307Thr	p.K307T	ENST00000305921	NM_003620.3	307	aAg/aCg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760800	59760800	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	75	360	0	ENST00000259008.2:c.3607G>T	p.Glu1203Ter	p.E1203*	ENST00000259008	NM_032043.2	1203	Gaa/Taa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59820440	59820440	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	36	380	0	ENST00000259008.2:c.2313C>A	p.Phe771Leu	p.F771L	ENST00000259008	NM_032043.2	771	ttC/ttA																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59858295	59858295	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	72	358	0	ENST00000259008.2:c.1700A>C	p.Lys567Thr	p.K567T	ENST00000259008	NM_032043.2	567	aAa/aCa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59878673	59878673	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	83	402	0	ENST00000259008.2:c.1081G>T	p.Asp361Tyr	p.D361Y	ENST00000259008	NM_032043.2	361	Gat/Tat																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217833	7217833	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	90	455	0	ENST00000380728.2:c.178A>G	p.Met60Val	p.M60V	ENST00000380728		60	Atg/Gtg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45423071	45423071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	157	392	0	ENST00000262160.6:c.57G>T	p.Lys19Asn	p.K19N	ENST00000262160	NM_005901.5	19	aaG/aaT																																																																															
MALT1	10892	MSKCC	GRCh37	18	56401580	56401580	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	82	324	0	ENST00000348428.3:c.1442A>C	p.Lys481Thr	p.K481T	ENST00000348428	NM_006785.3	481	aAa/aCa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56409161	56409161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	19	297	0	ENST00000348428.3:c.1668G>T	p.Glu556Asp	p.E556D	ENST00000348428	NM_006785.3	556	gaG/gaT																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61306469	61306469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	17	310	0	ENST00000341074.5:c.718G>T	p.Asp240Tyr	p.D240Y	ENST00000341074	NM_002974.2	240	Gat/Tat																																																																															
YES1	7525	MSKCC	GRCh37	18	736883	736883	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	29	340	0	ENST00000314574.4:c.1216G>T	p.Glu406Ter	p.E406*	ENST00000314574	NM_005433.3	406	Gaa/Taa																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031731	11031731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	166	519	0	ENST00000327064.4:c.1543C>T	p.Pro515Ser	p.P515S	ENST00000327064	NM_199141.1	515	Ccg/Tcg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11106922	11106922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	145	432	0	ENST00000344626.4:c.1627G>A	p.Asp543Asn	p.D543N	ENST00000344626	NM_003072.3	543	Gac/Aac																																																																															
CALR	811	MSKCC	GRCh37	19	13050394	13050394	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	44	393	0	ENST00000316448.5:c.346A>C	p.Ser116Arg	p.S116R	ENST00000316448	NM_004343.3	116	Agt/Cgt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296169	15296169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	132	509	0	ENST00000263388.2:c.2195G>A	p.Ser732Asn	p.S732N	ENST00000263388	NM_000435.2	732	aGc/aAc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375299	15375299	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	41	404	0	ENST00000263377.2:c.1128C>A	p.Phe376Leu	p.F376L	ENST00000263377	NM_058243.2	376	ttC/ttA																																																																															
AKT2	208	MSKCC	GRCh37	19	40739806	40739806	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	135	494	0	ENST00000392038.2:c.1419C>A	p.Phe473Leu	p.F473L	ENST00000392038	NM_001626.4	473	ttC/ttA																																																																															
AXL	558	MSKCC	GRCh37	19	41759577	41759577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	96	338	0	ENST00000301178.4:c.2000G>T	p.Arg667Ile	p.R667I	ENST00000301178	NM_021913.4	667	aGa/aTa																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422164	47422164	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	128	374	0	ENST00000404338.3:c.232G>T	p.Glu78Ter	p.E78*	ENST00000404338	NM_004491.4	78	Gaa/Taa																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422416	47422416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	151	420	0	ENST00000404338.3:c.484C>A	p.Leu162Ile	p.L162I	ENST00000404338	NM_004491.4	162	Ctt/Att																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424750	47424750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	128	432	0	ENST00000404338.3:c.2818G>T	p.Asp940Tyr	p.D940Y	ENST00000404338	NM_004491.4	940	Gat/Tat																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128044512	128044512	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	35	378	0	ENST00000285398.2:c.1109C>A	p.Ser370Tyr	p.S370Y	ENST00000285398	NM_000122.1	370	tCt/tAt																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046960	128046960	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	44	402	0	ENST00000285398.2:c.775G>T	p.Glu259Ter	p.E259*	ENST00000285398	NM_000122.1	259	Gaa/Taa																																																																															
ACVR1	90	MSKCC	GRCh37	2	158617503	158617503	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	104	420	0	ENST00000263640.3:c.1153G>T	p.Glu385Ter	p.E385*	ENST00000263640	NM_001105.4	385	Gaa/Taa																																																																															
ACVR1	90	MSKCC	GRCh37	2	158634801	158634801	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	112	381	0	ENST00000263640.3:c.385C>A	p.Leu129Ile	p.L129I	ENST00000263640	NM_001105.4	129	Ctc/Atc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082355	16082355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	38	453	0	ENST00000281043.3:c.169C>T	p.Pro57Ser	p.P57S	ENST00000281043	NM_005378.4	57	Ccc/Tcc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095884	178095884	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	86	424	0	ENST00000397062.3:c.1447G>T	p.Glu483Ter	p.E483*	ENST00000397062	NM_006164.4	483	Gaa/Taa																																																																															
PMS1	5378	MSKCC	GRCh37	2	190717474	190717474	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	62	336	0	ENST00000441310.2:c.793C>T	p.Arg265Ter	p.R265*	ENST00000441310	NM_000534.4	265	Cga/Tga																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198257739	198257739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	36	387	0	ENST00000335508.6:c.3713G>A	p.Arg1238Lys	p.R1238K	ENST00000335508	NM_012433.2	1238	aGa/aAa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248786	212248786	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	66	350	0	ENST00000342788.4:c.3482-1G>T		p.X1161_splice	ENST00000342788	NM_005235.2	1161																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212483995	212483995	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	10	291	0	ENST00000342788.4:c.2208T>G	p.Ile736Met	p.I736M	ENST00000342788	NM_005235.2	736	atT/atG																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812218	212812218	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	31	387	0	ENST00000342788.4:c.358T>A	p.Phe120Ile	p.F120I	ENST00000342788	NM_005235.2	120	Ttt/Att																																																																															
BARD1	580	MSKCC	GRCh37	2	215593551	215593551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	130	433	0	ENST00000260947.4:c.2183C>A	p.Ser728Tyr	p.S728Y	ENST00000260947	NM_000465.2	728	tCt/tAt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225379476	225379476	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	13	306	0	ENST00000264414.4:c.392T>C	p.Val131Ala	p.V131A	ENST00000264414	NM_003590.4	131	gTa/gCa																																																																															
ALK	238	MSKCC	GRCh37	2	29474079	29474079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	132	468	0	ENST00000389048.3:c.2096C>T	p.Ala699Val	p.A699V	ENST00000389048	NM_004304.4	699	gCa/gTa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39241910	39241910	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	14	247	0	ENST00000402219.2:c.1936G>T	p.Glu646Ter	p.E646*	ENST00000402219	NM_005633.3	646	Gaa/Taa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39250159	39250159	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	71	376	0	ENST00000402219.2:c.1410C>A	p.Cys470Ter	p.C470*	ENST00000402219	NM_005633.3	470	tgC/tgA																																																																															
MSH2	4436	MSKCC	GRCh37	2	47690231	47690231	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	60	345	0	ENST00000233146.2:c.1448A>G	p.Glu483Gly	p.E483G	ENST00000233146	NM_000251.2	483	gAa/gGa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61708340	61708340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	18	264	0	ENST00000401558.2:c.3049G>T	p.Asp1017Tyr	p.D1017Y	ENST00000401558	NM_003400.3	1017	Gat/Tat																																																																															
XPO1	7514	MSKCC	GRCh37	2	61721057	61721057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	81	384	0	ENST00000401558.2:c.1217G>A	p.Arg406Lys	p.R406K	ENST00000401558	NM_003400.3	406	aGa/aAa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024121	31024121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	114	481	0	ENST00000375687.4:c.3606G>T	p.Lys1202Asn	p.K1202N	ENST00000375687	NM_015338.5	1202	aaG/aaT																																																																															
TOP1	7150	MSKCC	GRCh37	20	39751860	39751860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	97	357	0	ENST00000361337.2:c.2221G>A	p.Glu741Lys	p.E741K	ENST00000361337	NM_003286.2	741	Gag/Aag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40738974	40738974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	83	303	0	ENST00000373198.4:c.3310A>G	p.Ser1104Gly	p.S1104G	ENST00000373198	NM_133170.3	1104	Agt/Ggt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46271009	46271009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	116	382	0	ENST00000371998.3:c.3133G>A	p.Glu1045Lys	p.E1045K	ENST00000371998		1045	Gaa/Aaa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46275953	46275953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	153	454	0	ENST00000371998.3:c.3389G>A	p.Gly1130Glu	p.G1130E	ENST00000371998		1130	gGa/gAa																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945374	54945374	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	91	365	0	ENST00000312783.6:c.1052T>A	p.Phe351Tyr	p.F351Y	ENST00000312783	NM_198436.1	351	tTt/tAt																																																																															
AURKA	6790	MSKCC	GRCh37	20	54958066	54958066	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	123	349	0	ENST00000312783.6:c.541G>T	p.Glu181Ter	p.E181*	ENST00000312783	NM_198436.1	181	Gaa/Taa																																																																															
AURKA	6790	MSKCC	GRCh37	20	54963222	54963222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	71	296	0	ENST00000312783.6:c.32G>T	p.Gly11Val	p.G11V	ENST00000312783	NM_198436.1	11	gGa/gTa																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326136	62326136	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	95	372	0	ENST00000482936.1:c.3152G>T	p.Arg1051Ile	p.R1051I	ENST00000482936		1051	aGa/aTa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546605	9546605	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	41	456	0	ENST00000353224.5:c.1417A>T	p.Lys473Ter	p.K473*	ENST00000353224	NM_177990.2	473	Aaa/Taa																																																																															
ERG	2078	MSKCC	GRCh37	21	39755550	39755550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	121	458	0	ENST00000288319.7:c.1215G>T	p.Glu405Asp	p.E405D	ENST00000288319	NM_182918.3	405	gaG/gaT																																																																															
NF2	4771	MSKCC	GRCh37	22	30038237	30038237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	32	388	0	ENST00000338641.4:c.410C>T	p.Ala137Val	p.A137V	ENST00000338641	NM_000268.3	137	gCt/gTt																																																																															
VHL	7428	MSKCC	GRCh37	3	10191644	10191644	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	39	334	0	ENST00000256474.2:c.637G>T	p.Asp213Tyr	p.D213Y	ENST00000256474	NM_000551.3	213	Gat/Tat																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119624627	119624627	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	75	398	0	ENST00000316626.5:c.788T>C	p.Val263Ala	p.V263A	ENST00000316626		263	gTg/gCg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12421311	12421311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	110	435	0	ENST00000287820.6:c.191C>T	p.Pro64Leu	p.P64L	ENST00000287820	NM_015869.4	64	cCc/cTc																																																																															
PPARG	5468	MSKCC	GRCh37	3	12421425	12421425	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	154	326	0	ENST00000287820.6:c.305A>G	p.Tyr102Cys	p.Y102C	ENST00000287820	NM_015869.4	102	tAc/tGc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12660033	12660033	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs949944826		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	155	319	0	ENST00000251849.4:c.188C>T	p.Pro63Leu	p.P63L	ENST00000251849	NM_002880.3	63	cCg/cTg																																																																															
ATR	545	MSKCC	GRCh37	3	142176538	142176538	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	126	329	0	ENST00000350721.4:c.7563T>G	p.Asn2521Lys	p.N2521K	ENST00000350721	NM_001184.3	2521	aaT/aaG																																																																															
ATR	545	MSKCC	GRCh37	3	142226814	142226814	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	25	342	0	ENST00000350721.4:c.4990G>T	p.Glu1664Ter	p.E1664*	ENST00000350721	NM_001184.3	1664	Gaa/Taa																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182665053	182665053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	65	331	0	ENST00000292782.4:c.673G>T	p.Asp225Tyr	p.D225Y	ENST00000292782	NM_020640.2	225	Gat/Tat																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155234	185155234	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	117	343	0	ENST00000265026.3:c.476-1G>T		p.X159_splice	ENST00000265026	NM_004721.4	159																																																																																
BCL6	604	MSKCC	GRCh37	3	187440272	187440272	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	104	360	0	ENST00000232014.4:c.2095C>G	p.Pro699Ala	p.P699A	ENST00000232014	NM_001130845.1	699	Cct/Gct																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729966	30729966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	48	352	0	ENST00000359013.4:c.1562G>A	p.Gly521Glu	p.G521E	ENST00000359013	NM_001024847.2	521	gGg/gAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41268738	41268738	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	32	339	0	ENST00000349496.5:c.976A>C	p.Asn326His	p.N326H	ENST00000349496	NM_001904.3	326	Aat/Cat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125371	47125371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	155	442	0	ENST00000409792.3:c.5899G>A	p.Gly1967Ser	p.G1967S	ENST00000409792	NM_014159.6	1967	Ggc/Agc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125866	47125866	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	83	282	0	ENST00000409792.3:c.5404A>C	p.Lys1802Gln	p.K1802Q	ENST00000409792	NM_014159.6	1802	Aag/Cag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47127742	47127742	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	170	366	0	ENST00000409792.3:c.5340G>A	p.Trp1780Ter	p.W1780*	ENST00000409792	NM_014159.6	1780	tgG/tgA																																																																															
SETD2	29072	MSKCC	GRCh37	3	47155456	47155456	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	112	343	0	ENST00000409792.3:c.4625G>T	p.Arg1542Ile	p.R1542I	ENST00000409792	NM_014159.6	1542	aGa/aTa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161946	47161946	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	33	400	0	ENST00000409792.3:c.4180G>T	p.Glu1394Ter	p.E1394*	ENST00000409792	NM_014159.6	1394	Gaa/Taa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164424	47164424	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	105	434	0	ENST00000409792.3:c.1702A>C	p.Lys568Gln	p.K568Q	ENST00000409792	NM_014159.6	568	Aaa/Caa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165114	47165114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	109	356	0	ENST00000409792.3:c.1012G>T	p.Asp338Tyr	p.D338Y	ENST00000409792	NM_014159.6	338	Gat/Tat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165795	47165795	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	123	389	0	ENST00000409792.3:c.331G>T	p.Asp111Tyr	p.D111Y	ENST00000409792	NM_014159.6	111	Gac/Tac																																																																															
RHOA	387	MSKCC	GRCh37	3	49397673	49397673	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	29	359	0	ENST00000418115.1:c.551G>T	p.Gly184Val	p.G184V	ENST00000418115	NM_001664.2	184	gGg/gTg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437509	52437509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759448397		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	144	432	0	ENST00000460680.1:c.1652G>A	p.Arg551His	p.R551H	ENST00000460680	NM_004656.3	551	cGt/cAt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52668761	52668761	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	89	393	0	ENST00000394830.3:c.1158T>G	p.Phe386Leu	p.F386L	ENST00000394830	NM_018313.4	386	ttT/ttG																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52712550	52712550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	31	356	0	ENST00000394830.3:c.202C>A	p.Leu68Ile	p.L68I	ENST00000394830	NM_018313.4	68	Ctc/Atc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898838	63898838	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	27	395	0	ENST00000295900.6:c.331G>T	p.Glu111Ter	p.E111*	ENST00000295900	NM_000333.3	111	Gaa/Taa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71096119	71096119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	150	401	0	ENST00000318789.4:c.638C>T	p.Ala213Val	p.A213V	ENST00000318789	NM_032682.5	213	gCc/gTc																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73112846	73112851	+	missense_variant	Missense_Mutation	ONP	AATCGA	AATCGA	CATCAA			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	22	290	0	ENST00000356692.5:c.442_446delinsCATCA	p.Asn148_Arg149delinsHisGln	p.N148_R149delinsHQ	ENST00000356692		148	AATCGA/CATCAA																																																																															
TET2	54790	MSKCC	GRCh37	4	106155238	106155238	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	147	370	0	ENST00000380013.4:c.139G>T	p.Glu47Ter	p.E47*	ENST00000380013	NM_001127208.2	47	Gaa/Taa																																																																															
TET2	54790	MSKCC	GRCh37	4	106157951	106157951	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	125	463	0	ENST00000380013.4:c.2852C>A	p.Ala951Asp	p.A951D	ENST00000380013	NM_001127208.2	951	gCt/gAt																																																																															
TET2	54790	MSKCC	GRCh37	4	106162568	106162568	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	30	276	0	ENST00000380013.4:c.3482G>T	p.Arg1161Ile	p.R1161I	ENST00000380013	NM_001127208.2	1161	aGa/aTa																																																																															
TET2	54790	MSKCC	GRCh37	4	106190800	106190800	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	104	337	0	ENST00000380013.4:c.4078C>A	p.Leu1360Met	p.L1360M	ENST00000380013	NM_001127208.2	1360	Ctg/Atg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143029278	143029278	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	92	255	0	ENST00000262992.4:c.2342A>G	p.Tyr781Cys	p.Y781C	ENST00000262992	NM_001101669.1	781	tAc/tGc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510152	187510152	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	43	501	0	ENST00000441802.2:c.13361A>G	p.Glu4454Gly	p.E4454G	ENST00000441802	NM_005245.3	4454	gAa/gGa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549819	187549819	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	37	341	0	ENST00000441802.2:c.4422A>C	p.Glu1474Asp	p.E1474D	ENST00000441802	NM_005245.3	1474	gaA/gaC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557250	187557250	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	42	455	1	ENST00000441802.2:c.4112A>G	p.Asp1371Gly	p.D1371G	ENST00000441802	NM_005245.3	1371	gAc/gGc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557970	187557970	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	165	443	0	ENST00000441802.2:c.3741A>C	p.Gln1247His	p.Q1247H	ENST00000441802	NM_005245.3	1247	caA/caC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187558009	187558009	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	96	413	0	ENST00000441802.2:c.3702A>C	p.Lys1234Asn	p.K1234N	ENST00000441802	NM_005245.3	1234	aaA/aaC																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1936958	1936958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	119	384	0	ENST00000382895.3:c.1643G>T	p.Arg548Ile	p.R548I	ENST00000382895	NM_133330.2	548	aGa/aTa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980533	1980533	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs561070783		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	155	437	0	ENST00000382895.3:c.3995C>T	p.Ser1332Leu	p.S1332L	ENST00000382895	NM_133330.2	1332	tCg/tTg																																																																															
KIT	3815	MSKCC	GRCh37	4	55589833	55589833	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	107	350	0	ENST00000288135.5:c.1315G>T	p.Asp439Tyr	p.D439Y	ENST00000288135	NM_000222.2	439	Gat/Tat																																																																															
KIT	3815	MSKCC	GRCh37	4	55593676	55593676	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	28	411	0	ENST00000288135.5:c.1742A>C	p.Lys581Thr	p.K581T	ENST00000288135	NM_000222.2	581	aAa/aCa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280133	66280133	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	33	381	0	ENST00000273854.3:c.1556A>C	p.Lys519Thr	p.K519T	ENST00000273854	NM_004439.5	519	aAa/aCa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286167	66286167	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	42	340	0	ENST00000273854.3:c.1519T>G	p.Phe507Val	p.F507V	ENST00000273854	NM_004439.5	507	Ttt/Gtt																																																																															
APC	324	MSKCC	GRCh37	5	112090644	112090644	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	54	272	0	ENST00000257430.4:c.57G>T	p.Glu19Asp	p.E19D	ENST00000257430	NM_000038.5	19	gaG/gaT																																																																															
APC	324	MSKCC	GRCh37	5	112102022	112102022	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	18	228	0	ENST00000257430.4:c.136-1G>T		p.X46_splice	ENST00000257430	NM_000038.5	46																																																																																
APC	324	MSKCC	GRCh37	5	112175753	112175753	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs765730576		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	114	478	1	ENST00000257430.4:c.4462T>G	p.Leu1488Val	p.L1488V	ENST00000257430	NM_000038.5	1488	Tta/Gta																																																																															
APC	324	MSKCC	GRCh37	5	112176758	112176758	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	96	393	0	ENST00000257430.4:c.5467T>G	p.Phe1823Val	p.F1823V	ENST00000257430	NM_000038.5	1823	Ttc/Gtc																																																																															
APC	324	MSKCC	GRCh37	5	112177918	112177918	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	32	466	0	ENST00000257430.4:c.6627T>G	p.Ile2209Met	p.I2209M	ENST00000257430	NM_000038.5	2209	atT/atG																																																																															
RAD50	10111	MSKCC	GRCh37	5	131915111	131915111	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	19	263	1	ENST00000265335.6:c.468C>A	p.Phe156Leu	p.F156L	ENST00000265335		156	ttC/ttA																																																																															
RAD50	10111	MSKCC	GRCh37	5	131915659	131915659	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	15	324	0	ENST00000265335.6:c.657A>C	p.Lys219Asn	p.K219N	ENST00000265335		219	aaA/aaC																																																																															
RAD50	10111	MSKCC	GRCh37	5	131915672	131915672	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753136372		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	27	353	0	ENST00000265335.6:c.670C>T	p.Arg224Cys	p.R224C	ENST00000265335		224	Cgt/Tgt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131923718	131923718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	50	321	0	ENST00000265335.6:c.988G>A	p.Glu330Lys	p.E330K	ENST00000265335		330	Gaa/Aaa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149501476	149501476	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	34	419	0	ENST00000261799.4:c.2311T>G	p.Tyr771Asp	p.Y771D	ENST00000261799	NM_002609.3	771	Tac/Gac																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636833	176636833	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	116	480	0	ENST00000439151.2:c.1433C>A	p.Ser478Ter	p.S478*	ENST00000439151	NM_022455.4	478	tCa/tAa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637300	176637300	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	41	430	0	ENST00000439151.2:c.1900G>T	p.Asp634Tyr	p.D634Y	ENST00000439151	NM_022455.4	634	Gat/Tat																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31401604	31401604	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	135	340	0	ENST00000344624.3:c.4060G>T	p.Glu1354Ter	p.E1354*	ENST00000344624		1354	Gaa/Taa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31421389	31421389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	73	344	0	ENST00000344624.3:c.3515G>A	p.Gly1172Glu	p.G1172E	ENST00000344624		1172	gGa/gAa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526586	31526586	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	22	277	0	ENST00000344624.3:c.454C>A	p.Pro152Thr	p.P152T	ENST00000344624		152	Cct/Act																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873732	35873732	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	100	335	0	ENST00000303115.3:c.688G>T	p.Glu230Ter	p.E230*	ENST00000303115	NM_002185.3	230	Gag/Tag																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38942964	38942964	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	96	344	0	ENST00000357387.3:c.5023G>T	p.Glu1675Ter	p.E1675*	ENST00000357387	NM_152756.3	1675	Gaa/Taa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38943064	38943064	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	61	277	0	ENST00000357387.3:c.4923G>T	p.Glu1641Asp	p.E1641D	ENST00000357387	NM_152756.3	1641	gaG/gaT																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945032	38945032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	75	398	0	ENST00000357387.3:c.4772G>A	p.Ser1591Asn	p.S1591N	ENST00000357387	NM_152756.3	1591	aGc/aAc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38958890	38958890	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	50	320	0	ENST00000357387.3:c.2222G>T	p.Arg741Ile	p.R741I	ENST00000357387	NM_152756.3	741	aGa/aTa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38964972	38964972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	31	357	0	ENST00000357387.3:c.1322C>T	p.Ser441Leu	p.S441L	ENST00000357387	NM_152756.3	441	tCa/tTa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168684	56168684	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	107	377	0	ENST00000399503.3:c.1538C>A	p.Ser513Tyr	p.S513Y	ENST00000399503	NM_005921.1	513	tCt/tAt																																																																															
MSH3	4437	MSKCC	GRCh37	5	80109424	80109424	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	23	365	0	ENST00000265081.6:c.2677A>C	p.Ile893Leu	p.I893L	ENST00000265081	NM_002439.4	893	Ata/Cta																																																																															
RASA1	5921	MSKCC	GRCh37	5	86670709	86670709	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	64	333	0	ENST00000274376.6:c.1987A>C	p.Lys663Gln	p.K663Q	ENST00000274376	NM_002890.2	663	Aag/Cag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86676403	86676403	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	33	335	0	ENST00000274376.6:c.2681G>T	p.Arg894Ile	p.R894I	ENST00000274376	NM_002890.2	894	aGa/aTa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86686647	86686647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	34	370	0	ENST00000274376.6:c.3091G>A	p.Glu1031Lys	p.E1031K	ENST00000274376	NM_002890.2	1031	Gaa/Aaa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117686847	117686847	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	77	358	0	ENST00000368508.3:c.2870G>T	p.Arg957Met	p.R957M	ENST00000368508	NM_002944.2	957	aGg/aTg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117700304	117700304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	60	324	0	ENST00000368508.3:c.2515G>T	p.Asp839Tyr	p.D839Y	ENST00000368508	NM_002944.2	839	Gac/Tac																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163766	152163766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	121	407	0	ENST00000206249.3:c.487G>A	p.Glu163Lys	p.E163K	ENST00000206249	NM_000125.3	163	Gaa/Aaa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382125	152382125	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	81	303	0	ENST00000206249.3:c.1236-1G>T		p.X412_splice	ENST00000206249	NM_000125.3	412																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157100229	157100229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	40	278	0	ENST00000346085.5:c.1166G>A	p.Ser389Asn	p.S389N	ENST00000346085	NM_020732.3	389	aGc/aAc																																																																															
E2F3	1871	MSKCC	GRCh37	6	20481647	20481647	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	41	380	0	ENST00000346618.3:c.716T>C	p.Val239Ala	p.V239A	ENST00000346618	NM_001949.4	239	gTc/gCc																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225414	26225414	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	128	533	0	ENST00000360408.1:c.32C>A	p.Ser11Tyr	p.S11Y	ENST00000360408	NM_003532.2	11	tCc/tAc																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778221	27778221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	39	477	1	ENST00000369163.2:c.370G>A	p.Asp124Asn	p.D124N	ENST00000369163	NM_003536.2	124	Gac/Aac																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675860	30675860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	133	456	0	ENST00000376406.3:c.2496G>T	p.Glu832Asp	p.E832D	ENST00000376406	NM_014641.2	832	gaG/gaT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165189	32165189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	154	482	0	ENST00000375023.3:c.4939C>T	p.Pro1647Ser	p.P1647S	ENST00000375023	NM_004557.3	1647	Cca/Tca																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818721	32818721	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	160	368	0	ENST00000354258.4:c.1230G>T	p.Gln410His	p.Q410H	ENST00000354258	NM_000593.5	410	caG/caT																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287348	33287348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	41	457	0	ENST00000374542.5:c.1749G>T	p.Glu583Asp	p.E583D	ENST00000374542	NM_001141970.1	583	gaG/gaT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967819	93967819	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs370400794		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	86	326	0	ENST00000369303.4:c.2108G>T	p.Arg703Ile	p.R703I	ENST00000369303	NM_004440.3	703	aGa/aTa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523561	106523561	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	42	346	0	ENST00000359195.3:c.2713G>T	p.Glu905Ter	p.E905*	ENST00000359195	NM_002649.2	905	Gaa/Taa																																																																															
MET	4233	MSKCC	GRCh37	7	116339912	116339912	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	115	405	0	ENST00000397752.3:c.774T>G	p.Phe258Leu	p.F258L	ENST00000397752	NM_000245.2	258	ttT/ttG																																																																															
MET	4233	MSKCC	GRCh37	7	116423522	116423522	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	67	308	0	ENST00000397752.3:c.3797T>C	p.Val1266Ala	p.V1266A	ENST00000397752	NM_000245.2	1266	gTg/gCg																																																																															
BRAF	673	MSKCC	GRCh37	7	140494191	140494191	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	173	463	0	ENST00000288602.6:c.1057C>A	p.His353Asn	p.H353N	ENST00000288602	NM_004333.4	353	Cat/Aat																																																																															
EZH2	2146	MSKCC	GRCh37	7	148506206	148506206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	36	388	0	ENST00000320356.2:c.2152A>G	p.Lys718Glu	p.K718E	ENST00000320356	NM_004456.4	718	Aag/Gag																																																																															
EZH2	2146	MSKCC	GRCh37	7	148507499	148507499	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	97	285	0	ENST00000320356.2:c.1955C>A	p.Ser652Tyr	p.S652Y	ENST00000320356	NM_004456.4	652	tCt/tAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878022	151878022	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	182	471	0	ENST00000262189.6:c.6923C>A	p.Ser2308Tyr	p.S2308Y	ENST00000262189	NM_170606.2	2308	tCt/tAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878301	151878301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	132	441	0	ENST00000262189.6:c.6644C>A	p.Ser2215Tyr	p.S2215Y	ENST00000262189	NM_170606.2	2215	tCt/tAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879324	151879324	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	61	501	0	ENST00000262189.6:c.5621C>A	p.Ser1874Tyr	p.S1874Y	ENST00000262189	NM_170606.2	1874	tCt/tAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151948052	151948052	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	28	227	0	ENST00000262189.6:c.1622-1G>T		p.X541_splice	ENST00000262189	NM_170606.2	541																																																																																
XRCC2	7516	MSKCC	GRCh37	7	152345789	152345789	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	110	371	0	ENST00000359321.1:c.781A>C	p.Lys261Gln	p.K261Q	ENST00000359321	NM_005431.1	261	Aaa/Caa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730069	41730069	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	161	408	0	ENST00000242208.4:c.460G>T	p.Glu154Ter	p.E154*	ENST00000242208	NM_002192.2	154	Gaa/Taa																																																																															
RAC1	5879	MSKCC	GRCh37	7	6438335	6438335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	24	260	0	ENST00000356142.4:c.268G>T	p.Asp90Tyr	p.D90Y	ENST00000356142	NM_018890.3	90	Gac/Tac																																																																															
HGF	3082	MSKCC	GRCh37	7	81335733	81335733	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs769438908		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	71	287	0	ENST00000222390.5:c.1627G>T	p.Asp543Tyr	p.D543Y	ENST00000222390	NM_000601.4	543	Gat/Tat																																																																															
RAD21	5885	MSKCC	GRCh37	8	117875378	117875378	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	91	350	0	ENST00000297338.2:c.265T>C	p.Phe89Leu	p.F89L	ENST00000297338	NM_006265.2	89	Ttt/Ctt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146051	38146051	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777371681		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	32	412	0	ENST00000317025.8:c.3455C>T	p.Thr1152Met	p.T1152M	ENST00000317025	NM_023034.1	1152	aCg/aTg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38184356	38184356	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	20	331	0	ENST00000317025.8:c.1600G>T	p.Glu534Ter	p.E534*	ENST00000317025	NM_023034.1	534	Gaa/Taa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38277197	38277197	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	149	412	0	ENST00000425967.3:c.1231T>G	p.Tyr411Asp	p.Y411D	ENST00000425967	NM_001174067.1	411	Tat/Gat																																																																															
LYN	4067	MSKCC	GRCh37	8	56863025	56863025	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1277517826		P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	85	325	0	ENST00000519728.1:c.292G>A	p.Glu98Lys	p.E98K	ENST00000519728	NM_002350.3	98	Gaa/Aaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68939530	68939530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	31	316	0	ENST00000288368.4:c.515G>T	p.Arg172Ile	p.R172I	ENST00000288368	NM_024870.2	172	aGa/aTa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69009418	69009418	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	86	315	0	ENST00000288368.4:c.2535C>A	p.Phe845Leu	p.F845L	ENST00000288368	NM_024870.2	845	ttC/ttA																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021761	69021761	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	67	358	0	ENST00000288368.4:c.3049G>T	p.Glu1017Ter	p.E1017*	ENST00000288368	NM_024870.2	1017	Gaa/Taa																																																																															
NBN	4683	MSKCC	GRCh37	8	90993032	90993032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	72	333	0	ENST00000265433.3:c.410G>A	p.Gly137Glu	p.G137E	ENST00000265433	NM_002485.4	137	gGa/gAa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911542	101911542	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	192	349	0	ENST00000374994.4:c.1467G>T	p.Lys489Asn	p.K489N	ENST00000374994	NM_004612.2	489	aaG/aaT																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2110341	2110341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	26	362	0	ENST00000349721.2:c.3380G>T	p.Arg1127Ile	p.R1127I	ENST00000349721	NM_003070.3	1127	aGa/aTa																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2119473	2119473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	26	309	0	ENST00000349721.2:c.3700C>T	p.Pro1234Ser	p.P1234S	ENST00000349721	NM_003070.3	1234	Ccg/Tcg																																																																															
TEK	7010	MSKCC	GRCh37	9	27206660	27206660	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	133	389	0	ENST00000380036.4:c.2445T>G	p.Ile815Met	p.I815M	ENST00000380036	NM_000459.3	815	atT/atG																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069025	5069025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	18	320	0	ENST00000381652.3:c.1330G>A	p.Glu444Lys	p.E444K	ENST00000381652	NM_004972.3	444	Gaa/Aaa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080281	5080281	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	72	312	0	ENST00000381652.3:c.2184A>C	p.Lys728Asn	p.K728N	ENST00000381652	NM_004972.3	728	aaA/aaC																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504286	8504286	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	30	411	0	ENST00000356435.5:c.1797A>C	p.Glu599Asp	p.E599D	ENST00000356435		599	gaA/gaC																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229677	98229677	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	158	342	0	ENST00000331920.6:c.2281C>A	p.Leu761Met	p.L761M	ENST00000331920	NM_000264.3	761	Ctg/Atg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98244433	98244433	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	158	354	0	ENST00000331920.6:c.637A>C	p.Thr213Pro	p.T213P	ENST00000331920	NM_000264.3	213	Aca/Cca																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44879914	44879914	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	50	390	0	ENST00000377967.4:c.503A>G	p.Glu168Gly	p.E168G	ENST00000377967	NM_021140.2	168	gAa/gGa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44894206	44894206	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	24	252	1	ENST00000377967.4:c.595C>A	p.Pro199Thr	p.P199T	ENST00000377967	NM_021140.2	199	Ccc/Acc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942001	44942001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	37	374	0	ENST00000377967.4:c.3251T>C	p.Phe1084Ser	p.F1084S	ENST00000377967	NM_021140.2	1084	tTt/tCt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949029	44949029	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	80	338	0	ENST00000377967.4:c.3590T>C	p.Leu1197Pro	p.L1197P	ENST00000377967	NM_021140.2	1197	cTt/cCt																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652408	48652408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	41	426	0	ENST00000376670.3:c.1079C>T	p.Thr360Ile	p.T360I	ENST00000376670	NM_002049.3	360	aCt/aTt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413103	63413103	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	79	393	0	ENST00000330258.3:c.64G>T	p.Glu22Ter	p.E22*	ENST00000330258	NM_152424.3	22	Gaa/Taa																																																																															
AR	367	MSKCC	GRCh37	X	66943671	66943671	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	83	344	0	ENST00000374690.3:c.2751C>A	p.Phe917Leu	p.F917L	ENST00000374690	NM_000044.3	917	ttC/ttA																																																																															
ATRX	546	MSKCC	GRCh37	X	76813117	76813118	+	splice_acceptor_variant	Splice_Site	INS	-	-	T			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	12	318	0	ENST00000373344.5:c.6505-2dup		p.X2169_splice	ENST00000373344	NM_000489.3	2169																																																																																
ATRX	546	MSKCC	GRCh37	X	76890145	76890145	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	75	283	0	ENST00000373344.5:c.4749G>T	p.Lys1583Asn	p.K1583N	ENST00000373344	NM_000489.3	1583	aaG/aaT																																																																															
ATRX	546	MSKCC	GRCh37	X	76937055	76937055	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	49	370	0	ENST00000373344.5:c.3693A>C	p.Glu1231Asp	p.E1231D	ENST00000373344	NM_000489.3	1231	gaA/gaC																																																																															
ATRX	546	MSKCC	GRCh37	X	76939827	76939827	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0089148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	41	445	0	ENST00000373344.5:c.921A>C	p.Lys307Asn	p.K307N	ENST00000373344	NM_000489.3	307	aaA/aaC																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266718	18266718	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1371555508		P-0085318-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	41	531	1	ENST00000222254.8:c.29G>A	p.Arg10His	p.R10H	ENST00000222254	NM_005027.3	10	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0088969-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	10	324	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156713	20156713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	143	384	0	ENST00000379607.5:c.44G>A	p.Gly15Asp	p.G15D	ENST00000379607	NM_001412.3	15	gGt/gAt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303243	15303243	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0088976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	141	599	0	ENST00000263388.2:c.285T>A	p.Ser95Arg	p.S95R	ENST00000263388	NM_000435.2	95	agT/agA																																																																															
RAD21	5885	MSKCC	GRCh37	8	117866594	117866594	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0088976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	120	484	0	ENST00000297338.2:c.1051T>G	p.Leu351Val	p.L351V	ENST00000297338	NM_006265.2	351	Ttg/Gtg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696450	47696450	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0087580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			509	273	327	1	ENST00000347630.2:c.373T>A	p.Phe125Ile	p.F125I	ENST00000347630	NM_001007230.1	125	Ttt/Att																																																																															
KDR	3791	MSKCC	GRCh37	4	55980311	55980311	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0087580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	242	325	0	ENST00000263923.4:c.780G>A	p.Trp260Ter	p.W260*	ENST00000263923	NM_002253.2	260	tgG/tgA																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680178	30680178	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0087580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			507	283	436	0	ENST00000376406.3:c.1541A>C	p.Gln514Pro	p.Q514P	ENST00000376406	NM_014641.2	514	cAa/cCa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106916	27106917	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0087951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	647	530	0	ENST00000324856.7:c.6527_6528del	p.Gln2176ArgfsTer48	p.Q2176Rfs*48	ENST00000324856	NM_006015.4	2176	cAG/c																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111511	8111512	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0087951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	323	360	0	ENST00000346208.3:c.997_998insC	p.Asn333ThrfsTer19	p.N333Tfs*19	ENST00000346208		333	aat/aCat																																																																															
PRDM1	639	MSKCC	GRCh37	6	106547383	106547383	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			828	61	396	0	ENST00000369096.4:c.620G>C	p.Arg207Thr	p.R207T	ENST00000369096	NM_001198.3	207	aGg/aCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0088650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			279	106	299	0	ENST00000256078.4:c.34_35delinsCT	p.Gly12Leu	p.G12L	ENST00000256078	NM_033360.2	12	GGt/CTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528716	8528716	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			480	205	401	0	ENST00000356435.5:c.416G>T	p.Arg139Leu	p.R139L	ENST00000356435		139	cGt/cTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097658	27097658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			696	126	406	0	ENST00000324856.7:c.3247G>A	p.Gly1083Ser	p.G1083S	ENST00000324856	NM_006015.4	1083	Ggc/Agc																																																																															
ATM	472	MSKCC	GRCh37	11	108160495	108160495	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0088650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			420	89	375	0	ENST00000278616.4:c.4403T>A	p.Val1468Asp	p.V1468D	ENST00000278616	NM_000051.3	1468	gTt/gAt																																																																															
GAB2	9846	MSKCC	GRCh37	11	77936165	77936185	+	inframe_deletion	In_Frame_Del	DEL	CAACTCCATCACTCATGGATT	CAACTCCATCACTCATGGATT	-			P-0088650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			551	105	384	0	ENST00000361507.4:c.1271_1291del	p.Glu424_Val430del	p.E424_V430del	ENST00000361507	NM_080491.2	424	gAATCCATGAGTGATGGAGTTGgc/ggc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986607	36986607	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	CC			P-0088650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			508	72	385	0	ENST00000354822.5:c.1082delinsGG	p.Ala361GlyfsTer78	p.A361Gfs*78	ENST00000354822	NM_001079668.2	361	gCg/gGGg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987157	36987157	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			540	204	406	0	ENST00000354822.5:c.532del	p.Asp178ThrfsTer2	p.D178Tfs*2	ENST00000354822	NM_001079668.2	178	Gac/ac																																																																															
APC	324	MSKCC	GRCh37	5	112116507	112116507	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			290	75	275	0	ENST00000257430.4:c.552G>T	p.Met184Ile	p.M184I	ENST00000257430	NM_000038.5	184	atG/atT																																																																															
BTK	695	MSKCC	GRCh37	X	100615091	100615091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0088650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			353	149	288	0	ENST00000308731.7:c.824C>G	p.Ser275Cys	p.S275C	ENST00000308731	NM_000061.2	275	tCc/tGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0088837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	25	207	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0088837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	109	403	0	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173848	112173849	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0088837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	180	440	0	ENST00000257430.4:c.2563_2564del	p.Glu855ThrfsTer56	p.E855Tfs*56	ENST00000257430	NM_000038.5	853	GAg/g																																																																															
UPF1	5976	MSKCC	GRCh37	19	18956798	18956798	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754519840		P-0088837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	237	378	0	ENST00000262803.5:c.241G>A	p.Glu81Lys	p.E81K	ENST00000262803	NM_002911.3	81	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0088837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	146	310	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112593	115112594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0088837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	247	525	0	ENST00000257566.3:c.1146dup	p.Glu383ArgfsTer24	p.E383Rfs*24	ENST00000257566	NM_016569.3	382	-/A																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101267	27101268	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			770	145	609	0	ENST00000324856.7:c.4555dup	p.Gln1519ProfsTer13	p.Q1519Pfs*13	ENST00000324856	NM_006015.4	1517	gcc/gCcc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456524	32456524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	74	391	0	ENST00000332351.3:c.368C>T	p.Ala123Val	p.A123V	ENST00000332351	NM_024426.4	123	gCg/gTg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856434	111856434	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776317487		P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			955	60	591	5	ENST00000341259.2:c.489del	p.Thr165ProfsTer32	p.T165Pfs*32	ENST00000341259	NM_005475.2	162	gCc/gc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112448	115112448	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1398394014		P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	290	580	1	ENST00000257566.3:c.1292C>T	p.Ala431Val	p.A431V	ENST00000257566	NM_016569.3	431	gCg/gTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133245023	133245024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs767646338		P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			866	137	590	1	ENST00000320574.5:c.2091dup	p.Phe699ValfsTer11	p.F699Vfs*11	ENST00000320574	NM_006231.2	697	-/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	188	322	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240069	41240069	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1482440466		P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	67	328	0	ENST00000379561.5:c.281T>C	p.Val94Ala	p.V94A	ENST00000379561	NM_002015.3	94	gTg/gCg																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2647662	2647662	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1389216086		P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	136	449	0	ENST00000342085.4:c.1565C>T	p.Thr522Met	p.T522M	ENST00000342085	NM_002613.4	522	aCg/aTg																																																																															
RARA	5914	MSKCC	GRCh37	17	38512402	38512402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	102	445	1	ENST00000254066.5:c.1319del	p.Pro440ArgfsTer203	p.P440Rfs*203	ENST00000254066	NM_000964.3	438	gCc/gc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs758630849		P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	104	513	0	ENST00000305921.3:c.1349del	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262139	10262139	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			807	161	523	2	ENST00000340748.4:c.2152del	p.Met718CysfsTer59	p.M718Cfs*59	ENST00000340748		718	Atg/tg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18961041	18961041	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	146	424	0	ENST00000262803.5:c.619C>G	p.Leu207Val	p.L207V	ENST00000262803	NM_002911.3	207	Ctg/Gtg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1111	164	698	0	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225343003	225343003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	121	374	0	ENST00000264414.4:c.2089G>A	p.Asp697Asn	p.D697N	ENST00000264414	NM_003590.4	697	Gac/Aac																																																																															
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			777	144	626	1	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																																																															
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	126	384	0	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																															
ATR	545	MSKCC	GRCh37	3	142215954	142215955	+	frameshift_variant	Frame_Shift_Ins	INS	GA	GA	AATG			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	91	391	0	ENST00000350721.4:c.5638_5639delinsCATT	p.Ser1880HisfsTer3	p.S1880Hfs*3	ENST00000350721	NM_001184.3	1880	TCt/CATTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	11	266	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185184646	185184646	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	135	499	0	ENST00000265026.3:c.1538G>T	p.Gly513Val	p.G513V	ENST00000265026	NM_004721.4	513	gGg/gTg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934243	49934243	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1407832113		P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			765	168	615	1	ENST00000296474.3:c.2264del	p.Gly755ValfsTer19	p.G755Vfs*19	ENST00000296474	NM_002447.2	755	gGt/gt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499363	89499363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1317589623		P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			722	98	524	0	ENST00000336596.2:c.2538del	p.Met847TrpfsTer10	p.M847Wfs*10	ENST00000336596	NM_005233.5	845	Ccc/cc																																																																															
APC	324	MSKCC	GRCh37	5	112173830	112173831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	112	455	0	ENST00000257430.4:c.2544dup	p.Asp849ArgfsTer2	p.D849Rfs*2	ENST00000257430	NM_000038.5	847	gaa/gAaa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	111	431	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
MSH3	4437	MSKCC	GRCh37	5	80149965	80149966	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	86	415	0	ENST00000265081.6:c.2838_2839dup	p.Lys947IlefsTer11	p.K947Ifs*11	ENST00000265081	NM_002439.4	944	aat/aATat																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239471	31239471	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs281860388		P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			977	104	635	0	ENST00000376228.5:c.248A>G	p.Tyr83Cys	p.Y83C	ENST00000376228	NM_002117.5	83	tAt/tGt																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815385	32815385	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	140	414	0	ENST00000354258.4:c.1988T>C	p.Leu663Pro	p.L663P	ENST00000354258	NM_000593.5	663	cTg/cCg																																																																															
CCND3	896	MSKCC	GRCh37	6	41903745	41903746	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			801	151	597	0	ENST00000372991.4:c.811dup	p.Arg271ProfsTer53	p.R271Pfs*53	ENST00000372991	NM_001760.3	271	cgg/cCgg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6036958	6036958	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	109	312	0	ENST00000265849.7:c.802del	p.Tyr268ThrfsTer39	p.Y268Tfs*39	ENST00000265849	NM_000535.5	268	Tac/ac																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231105	98231105	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	126	494	0	ENST00000331920.6:c.2178del	p.Cys727ValfsTer19	p.C727Vfs*19	ENST00000331920	NM_000264.3	726	ccC/cc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410267	63410267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	132	363	1	ENST00000330258.3:c.2900C>T	p.Pro967Leu	p.P967L	ENST00000330258	NM_152424.3	967	cCa/cTa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458870	120458870	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	150	577	0	ENST00000256646.2:c.6475A>G	p.Thr2159Ala	p.T2159A	ENST00000256646	NM_024408.3	2159	Acg/Gcg																																																																															
FH	2271	MSKCC	GRCh37	1	241663805	241663805	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	38	121	0	ENST00000366560.3:c.1322A>C	p.Asn441Thr	p.N441T	ENST00000366560	NM_000143.3	441	aAt/aCt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781887	9781887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	118	390	0	ENST00000377346.4:c.2024G>A	p.Ser675Asn	p.S675N	ENST00000377346	NM_005026.3	675	aGc/aAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343252	118343253	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	144	551	0	ENST00000534358.1:c.1383dup	p.Ser462IlefsTer19	p.S462Ifs*19	ENST00000534358	NM_005933.3	460	gaa/gAaa																																																																															
RAD52	5893	MSKCC	GRCh37	12	1042211	1042211	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			794	131	473	0	ENST00000358495.3:c.14A>C	p.Glu5Ala	p.E5A	ENST00000358495	NM_134424.2	5	gAg/gCg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	419126	419126	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	215	470	0	ENST00000399788.2:c.3221T>G	p.Leu1074Arg	p.L1074R	ENST00000399788	NM_001042603.1	1074	cTg/cGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434033	49434033	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			895	152	596	0	ENST00000301067.7:c.7520A>G	p.His2507Arg	p.H2507R	ENST00000301067	NM_003482.3	2507	cAt/cGt																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50484334	50484334	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			727	129	426	0	ENST00000394963.4:c.1094T>C	p.Leu365Pro	p.L365P	ENST00000394963	NM_003076.4	365	cTt/cCt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129399	2129400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	99	500	0	ENST00000219476.3:c.3259dup	p.Glu1087GlyfsTer81	p.E1087Gfs*81	ENST00000219476	NM_000548.3	1085	tcg/tcGg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17122392	17122392	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	141	533	0	ENST00000285071.4:c.1003T>G	p.Cys335Gly	p.C335G	ENST00000285071	NM_144997.5	335	Tgt/Ggt																																																																															
NF1	4763	MSKCC	GRCh37	17	29670113	29670113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	117	397	0	ENST00000358273.4:c.7149C>A	p.Asn2383Lys	p.N2383K	ENST00000358273	NM_001042492.2	2383	aaC/aaA																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78931511	78931511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	112	432	0	ENST00000306801.3:c.3458A>G	p.Asp1153Gly	p.D1153G	ENST00000306801	NM_020761.2	1153	gAc/gGc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221295	1221295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			853	166	621	0	ENST00000326873.7:c.818C>A	p.Ala273Asp	p.A273D	ENST00000326873	NM_000455.4	273	gCc/gAc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308084	30308084	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	151	531	1	ENST00000262643.3:c.221T>C	p.Leu74Pro	p.L74P	ENST00000262643	NM_001238.2	74	cTg/cCg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423701	47423701	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			837	149	488	0	ENST00000404338.3:c.1769T>G	p.Leu590Arg	p.L590R	ENST00000404338	NM_004491.4	590	cTc/cGc																																																																															
CASP8	841	MSKCC	GRCh37	2	202131340	202131340	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	144	532	0	ENST00000358485.4:c.308T>C	p.Leu103Ser	p.L103S	ENST00000358485	NM_001080125.1	103	tTa/tCa																																																																															
BARD1	580	MSKCC	GRCh37	2	215645459	215645459	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	88	491	2	ENST00000260947.4:c.1139del	p.Asn380ThrfsTer20	p.N380Tfs*20	ENST00000260947	NM_000465.2	380	aAc/ac																																																																															
REL	5966	MSKCC	GRCh37	2	61118949	61118949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	131	499	0	ENST00000295025.8:c.142C>T	p.Pro48Ser	p.P48S	ENST00000295025	NM_002908.2	48	Cct/Tct																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770579	40770579	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	105	467	0	ENST00000373198.4:c.2803A>G	p.Asn935Asp	p.N935D	ENST00000373198	NM_133170.3	935	Aat/Gat																																																																															
ATR	545	MSKCC	GRCh37	3	142215929	142215937	+	frameshift_variant	Frame_Shift_Ins	INS	TTCTAGTCG	TTCTAGTCG	GAAGATTCTCTAAACTGGGT			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	93	383	0	ENST00000350721.4:c.5656_5664delinsACCCAGTTTAGAGAATCTTC	p.Arg1886ThrfsTer8	p.R1886Tfs*8	ENST00000350721	NM_001184.3	1886	CGACTAGAA/ACCCAGTTTAGAGAATCTTC																																																																															
ATR	545	MSKCC	GRCh37	3	142215942	142215949	+	frameshift_variant	Frame_Shift_Del	DEL	ACCCAGTT	ACCCAGTT	CGAC			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	86	405	0	ENST00000350721.4:c.5644_5651delinsGTCG	p.Asn1882ValfsTer5	p.N1882Vfs*5	ENST00000350721	NM_001184.3	1882	AACTGGGTa/GTCGa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155406	185155406	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	123	406	0	ENST00000265026.3:c.647T>C	p.Ile216Thr	p.I216T	ENST00000265026	NM_004721.4	216	aTc/aCc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143114333	143114333	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	113	378	0	ENST00000262992.4:c.1088T>C	p.Val363Ala	p.V363A	ENST00000262992	NM_001101669.1	363	gTc/gCc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629126	187629126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	140	481	0	ENST00000441802.2:c.1856C>T	p.Pro619Leu	p.P619L	ENST00000441802	NM_005245.3	619	cCc/cTc																																																																															
SESN1	27244	MSKCC	GRCh37	6	109315779	109315779	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	116	376	0	ENST00000436639.2:c.1006A>G	p.Met336Val	p.M336V	ENST00000436639	NM_014454.2	336	Atg/Gtg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129335	152129335	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	82	512	1	ENST00000206249.3:c.290del	p.Phe97SerfsTer12	p.F97Sfs*12	ENST00000206249	NM_000125.3	96	ggT/gg																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239459	31239459	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1046	57	625	0	ENST00000376228.5:c.260A>T	p.Glu87Val	p.E87V	ENST00000376228	NM_002117.5	87	gAg/gTg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324866	31324866	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	77	321	0	ENST00000412585.2:c.70del	p.Ala24ProfsTer6	p.A24Pfs*6	ENST00000412585	NM_005514.6	24	Gcc/cc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163670	32163671	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	125	520	0	ENST00000375023.3:c.5555dup	p.His1853AlafsTer63	p.H1853Afs*63	ENST00000375023	NM_004557.3	1852	ccg/ccCg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141582912	141582912	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	138	464	0	ENST00000220592.5:c.335A>C	p.Lys112Thr	p.K112T	ENST00000220592	NM_012154.3	112	aAg/aCg																																																																															
BTK	695	MSKCC	GRCh37	X	100611868	100611868	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	50	252	0	ENST00000308731.7:c.1253A>G	p.Tyr418Cys	p.Y418C	ENST00000308731	NM_000061.2	418	tAt/tGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	65	212	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	242	412	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	195	327	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368208	45368208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	116	392	0	ENST00000262160.6:c.1394G>A	p.Ser465Asn	p.S465N	ENST00000262160	NM_005901.5	465	aGc/aAc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	188	356	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621908	1621908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	232	456	0	ENST00000344749.5:c.884C>T	p.Ser295Leu	p.S295L	ENST00000344749	NM_001136139.2	295	tCa/tTa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231375	5231375	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs757257991		P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	179	421	0	ENST00000357368.4:c.2101G>C	p.Glu701Gln	p.E701Q	ENST00000357368	NM_002850.3	701	Gag/Cag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106094	8106094	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	207	371	0	ENST00000346208.3:c.914G>T	p.Arg305Leu	p.R305L	ENST00000346208		305	cGa/cTa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482843	67482843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	211	382	0	ENST00000327367.4:c.1247C>T	p.Ser416Phe	p.S416F	ENST00000327367	NM_005902.3	416	tCc/tTc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061226	38061226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	221	437	0	ENST00000250448.2:c.763G>A	p.Glu255Lys	p.E255K	ENST00000250448	NM_004496.3	255	Gag/Aag																																																																															
AR	367	MSKCC	GRCh37	X	66765521	66765521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	220	449	0	ENST00000374690.3:c.533C>T	p.Ser178Phe	p.S178F	ENST00000374690	NM_000044.3	178	tCc/tTc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438190	56438190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	200	378	0	ENST00000407977.2:c.803C>T	p.Ser268Leu	p.S268L	ENST00000407977		268	tCa/tTa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060638	38060638	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764112817		P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	282	556	1	ENST00000250448.2:c.1351G>A	p.Glu451Lys	p.E451K	ENST00000250448	NM_004496.3	451	Gag/Aag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346775	89346775	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	206	457	0	ENST00000301030.4:c.6175C>G	p.Pro2059Ala	p.P2059A	ENST00000301030	NM_001256183.1	2059	Ccc/Gcc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261225	16261225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	224	458	0	ENST00000375759.3:c.8490C>G	p.Ile2830Met	p.I2830M	ENST00000375759	NM_015001.2	2830	atC/atG																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012253	152012253	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	137	345	0	ENST00000262189.6:c.560C>G	p.Ser187Ter	p.S187*	ENST00000262189	NM_170606.2	187	tCa/tGa																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281980	49281980	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	197	388	0	ENST00000282018.3:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000282018	NM_020377.2	343	Gaa/Taa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261277	16261277	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	206	427	0	ENST00000375759.3:c.8542C>T	p.Gln2848Ter	p.Q2848*	ENST00000375759	NM_015001.2	2848	Cag/Tag																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621184	1621184	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1458537272		P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	209	373	0	ENST00000344749.5:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000344749	NM_001136139.2	321	cGa/cAa																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222367	6222367	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1221083899		P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	174	338	0	ENST00000252674.7:c.875C>T	p.Ser292Leu	p.S292L	ENST00000252674	NM_005934.3	292	tCg/tTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231426	5231426	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1036934835		P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	180	418	0	ENST00000357368.4:c.2050G>C	p.Glu684Gln	p.E684Q	ENST00000357368	NM_002850.3	684	Gag/Cag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830412	72830412	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	136	316	0	ENST00000268489.5:c.6169C>G	p.Gln2057Glu	p.Q2057E	ENST00000268489	NM_006885.3	2057	Cag/Gag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435027	56435027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	476	477	0	ENST00000407977.2:c.2110C>T	p.Pro704Ser	p.P704S	ENST00000407977		704	Cca/Tca																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30293171	30293171	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	104	171	0	ENST00000322652.5:c.461C>G	p.Ser154Ter	p.S154*	ENST00000322652	NM_015355.2	154	tCa/tGa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852562	63852562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	215	392	0	ENST00000279873.7:c.3340C>G	p.Pro1114Ala	p.P1114A	ENST00000279873	NM_032199.2	1114	Cca/Gca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231436	5231436	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	192	385	0	ENST00000357368.4:c.2040G>T	p.Gln680His	p.Q680H	ENST00000357368	NM_002850.3	680	caG/caT																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643664	52643664	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	191	386	0	ENST00000394830.3:c.2232G>C	p.Leu744Phe	p.L744F	ENST00000394830	NM_018313.4	744	ttG/ttC																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465025	120465025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	207	411	0	ENST00000256646.2:c.5047G>A	p.Ala1683Thr	p.A1683T	ENST00000256646	NM_024408.3	1683	Gct/Act																																																																															
YAP1	10413	MSKCC	GRCh37	11	102098248	102098248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	175	339	0	ENST00000282441.5:c.1212G>A	p.Met404Ile	p.M404I	ENST00000282441	NM_001130145.2	404	atG/atA																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821241	72821241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	208	413	0	ENST00000268489.5:c.10934C>T	p.Ser3645Leu	p.S3645L	ENST00000268489	NM_006885.3	3645	tCa/tTa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259375	16259375	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	248	472	0	ENST00000375759.3:c.6640G>T	p.Glu2214Ter	p.E2214*	ENST00000375759	NM_015001.2	2214	Gag/Tag																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482755	67482755	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	203	392	0	ENST00000327367.4:c.1159C>T	p.Gln387Ter	p.Q387*	ENST00000327367	NM_005902.3	387	Cag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260287	16260287	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	265	498	0	ENST00000375759.3:c.7552C>G	p.Leu2518Val	p.L2518V	ENST00000375759	NM_015001.2	2518	Ctt/Gtt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11291361	11291361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	199	407	0	ENST00000361445.4:c.2645G>A	p.Arg882Lys	p.R882K	ENST00000361445	NM_004958.3	882	aGa/aAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0088978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	66	275	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0088978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	141	473	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0088978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	143	423	0	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52582141	52582141	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1164015194		P-0088978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	162	421	0	ENST00000394830.3:c.4687C>T	p.Arg1563Ter	p.R1563*	ENST00000394830	NM_018313.4	1563	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112170863	112170863	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0088978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	88	239	0	ENST00000257430.4:c.1958+1G>T		p.X653_splice	ENST00000257430	NM_000038.5	653																																																																																
APC	324	MSKCC	GRCh37	5	112175959	112175960	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0088978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	110	447	0	ENST00000257430.4:c.4669_4670del	p.Ile1557Ter	p.I1557*	ENST00000257430	NM_000038.5	1556	acTAtt/actt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468116	50468116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	62	483	0	ENST00000331340.3:c.1351G>A	p.Val451Met	p.V451M	ENST00000331340	NM_006060.4	451	Gtg/Atg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0088978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	116	221	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150921597	150921597	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0088978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	93	343	0	ENST00000271640.5:c.1268-1G>C		p.X423_splice	ENST00000271640	NM_001145415.1	423																																																																																
SETD2	29072	MSKCC	GRCh37	3	47144905	47144905	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0088978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	77	333	0	ENST00000409792.3:c.4848T>A	p.Asp1616Glu	p.D1616E	ENST00000409792	NM_014159.6	1616	gaT/gaA																																																																															
TET2	54790	MSKCC	GRCh37	4	106197171	106197171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	96	396	0	ENST00000380013.4:c.5504G>A	p.Gly1835Asp	p.G1835D	ENST00000380013	NM_001127208.2	1835	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0088982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	20	511	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505330	25505330	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745432645		P-0088982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	107	508	0	ENST00000264709.3:c.428G>A	p.Arg143Gln	p.R143Q	ENST00000264709	NM_175629.2	143	cGa/cAa																																																																															
CDH1	999	MSKCC	GRCh37	16	68844247	68844247	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0088982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	80	339	1	ENST00000261769.5:c.832+3A>G		p.X278_splice	ENST00000261769	NM_004360.3	278																																																																																
NCOR1	9611	MSKCC	GRCh37	17	15961818	15961818	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs542449256		P-0088982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	49	445	0	ENST00000268712.3:c.5977C>T	p.Gln1993Ter	p.Q1993*	ENST00000268712	NM_006311.3	1993	Cag/Tag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965421	18965421	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0088982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	55	399	0	ENST00000262803.5:c.1168G>C	p.Glu390Gln	p.E390Q	ENST00000262803	NM_002911.3	390	Gag/Cag																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38966783	38966783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	18	349	1	ENST00000357387.3:c.1259C>T	p.Ser420Leu	p.S420L	ENST00000357387	NM_152756.3	420	tCa/tTa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118710	115118712	+	inframe_deletion	In_Frame_Del	DEL	TGG	TGG	-			P-0088982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	211	561	0	ENST00000257566.3:c.629_631del	p.Thr210del	p.T210del	ENST00000257566	NM_016569.3	210	aCCAac/aac																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169991095	169991095	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0088982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	27	291	0	ENST00000295797.4:c.613C>T	p.Gln205Ter	p.Q205*	ENST00000295797	NM_002740.5	205	Cag/Tag																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858366	27858366	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1225463589		P-0088982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			748	169	760	0	ENST00000359303.2:c.205C>T	p.Gln69Ter	p.Q69*	ENST00000359303	NM_003535.2	69	Cag/Tag																																																																															
SRC	6714	MSKCC	GRCh37	20	36022395	36022395	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0088982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	75	594	0	ENST00000358208.4:c.448G>T	p.Glu150Ter	p.E150*	ENST00000358208		150	Gag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42058533	42058533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	52	525	0	ENST00000219905.7:c.8253G>A	p.Met2751Ile	p.M2751I	ENST00000219905	NM_001164273.1	2751	atG/atA																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671280	30671280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	71	576	0	ENST00000376406.3:c.5597G>A	p.Arg1866Lys	p.R1866K	ENST00000376406	NM_014641.2	1866	aGa/aAa																																																																															
INSR	3643	MSKCC	GRCh37	19	7125496	7125496	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0088982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	76	551	0	ENST00000302850.5:c.3056C>G	p.Ser1019Cys	p.S1019C	ENST00000302850	NM_000208.2	1019	tCt/tGt																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21347103	21347103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	61	484	0	ENST00000215739.8:c.1170C>A	p.Phe390Leu	p.F390L	ENST00000215739	NM_006767.3	390	ttC/ttA																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251126	99251126	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0088982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	75	552	0	ENST00000268035.6:c.430G>T	p.Glu144Ter	p.E144*	ENST00000268035	NM_000875.3	144	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0088999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	89	341	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0088999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	109	399	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247367	153247367	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0088999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	158	358	0	ENST00000281708.4:c.1435C>T	p.Arg479Ter	p.R479*	ENST00000281708	NM_033632.3	479	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916954	178916956	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0088999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	121	333	0	ENST00000263967.3:c.341_343del	p.Asn114del	p.N114del	ENST00000263967	NM_006218.2	114	aATCga/aga																																																																															
APC	324	MSKCC	GRCh37	5	112175604	112175604	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	130	473	0	ENST00000257430.4:c.4313del	p.Thr1438AsnfsTer35	p.T1438Nfs*35	ENST00000257430	NM_000038.5	1438	aCa/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0088999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	173	268	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923820	72923820	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0088999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	28	440	0	ENST00000268489.5:c.3258C>G	p.Cys1086Trp	p.C1086W	ENST00000268489	NM_006885.3	1086	tgC/tgG																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097716	8097716	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0088999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	112	466	0	ENST00000346208.3:c.98A>C	p.His33Pro	p.H33P	ENST00000346208		33	cAc/cCc																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112767304	112767304	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	128	366	0	ENST00000369452.4:c.1177T>C	p.Ser393Pro	p.S393P	ENST00000369452	NM_007373.3	393	Tca/Cca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256033	16256033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	150	467	0	ENST00000375759.3:c.3298G>A	p.Glu1100Lys	p.E1100K	ENST00000375759	NM_015001.2	1100	Gaa/Aaa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086051-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			190	182	539	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																																																															
JAK1	3716	MSKCC	GRCh37	1	65323452	65323452	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765489448		P-0086051-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			424	36	580	0	ENST00000342505.4:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000342505	NM_002227.2	449	Gcc/Acc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240768	55240768	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086051-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			512	105	690	0	ENST00000275493.2:c.2012G>T	p.Arg671Leu	p.R671L	ENST00000275493	NM_005228.3	671	cGc/cTc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156711	55156711	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0086051-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	164	553	0	ENST00000257290.5:c.3112A>C	p.Asn1038His	p.N1038H	ENST00000257290	NM_006206.4	1038	Aac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587782082		P-0088176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	141	480	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0088176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	61	362	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465533	8465533	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	92	534	0	ENST00000356435.5:c.3647A>G	p.Asn1216Ser	p.N1216S	ENST00000356435		1216	aAc/aGc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0088356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	19	394	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55086982	55087002	+	inframe_deletion	In_Frame_Del	DEL	CGGGACGGCCGGGGCAGCGCT	CGGGACGGCCGGGGCAGCGCT	-			P-0088356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	24	245	0	ENST00000275493.2:c.13_33del	p.Gly5_Leu11del	p.G5_L11del	ENST00000275493	NM_005228.3	4	tcCGGGACGGCCGGGGCAGCGCTc/tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0088923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	5	294	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0088927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	26	347	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30047489	30047489	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	41	298	0	ENST00000331968.5:c.2512T>C	p.Trp838Arg	p.W838R	ENST00000331968	NM_002742.2	838	Tgg/Cgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0088801-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	278	334	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0088801-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	168	410	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508080	106508080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088801-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			737	78	413	0	ENST00000359195.3:c.74C>T	p.Pro25Leu	p.P25L	ENST00000359195	NM_002649.2	25	cCg/cTg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300840	137300840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088801-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			743	61	434	0	ENST00000481739.1:c.485C>T	p.Thr162Met	p.T162M	ENST00000481739	NM_002957.4	162	aCg/aTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76814171	76814171	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0088801-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	61	324	0	ENST00000373344.5:c.6473A>T	p.Lys2158Met	p.K2158M	ENST00000373344	NM_000489.3	2158	aAg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0088803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	38	385	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112170747	112170747	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0088803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	26	394	0	ENST00000257430.4:c.1847del	p.Leu616TrpfsTer14	p.L616Wfs*14	ENST00000257430	NM_000038.5	615	Ttt/tt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857232	9857232	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377337296		P-0088803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	41	456	2	ENST00000330684.3:c.4169C>T	p.Ser1390Leu	p.S1390L	ENST00000330684	NM_001134407.1	1390	tCg/tTg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93955104	93955104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	13	331	0	ENST00000369303.4:c.2794C>A	p.Leu932Ile	p.L932I	ENST00000369303	NM_004440.3	932	Cta/Ata																																																																															
TP53	7157	MSKCC	GRCh37	17	7579464	7579956	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	GGGCCACGGGGGGAGCAGCCTCTGGCATTCTGGGAGCTTCATCTGGACCTGGGTCTTCAGTGAACCATTGTTCAATATCGTCCGGGGACAGCATCAAATCATCCATTGCTTGGGACGGCAAGGGGGACTGTAGATGGGTGAAAAGAGCAGTCAGAGGACCAGGTCCTCAGCCCCCCAGCCCCCCAGCCCTCCAGGTCCCCAGCCCTCCAGGTCCCCAGCCCAACCCTTGTCCTTACCAGAACGTTGTTTTCAGGAAGTCTGAAAGACAAGAGCAGAAAGTCAGTCCCATGGAATTTTCGCTTCCCACAGGTCTCTGCTAGGGGGCTGGGGTTGGGGTGGGGGTGGTGGGCCTGCCCTTCCAATGGATCCACTCACAGTTTCCATAGGTCTGAAAATGTTTCCTGACTCAGAGGGGGCTCGACGCTAGGATCTGACTGCGGCTCCTCCATGGCAGTGACCCGGAAGGCAGTCTGGCTGCTGCAAGAGGAAAAGT	GGGCCACGGGGGGAGCAGCCTCTGGCATTCTGGGAGCTTCATCTGGACCTGGGTCTTCAGTGAACCATTGTTCAATATCGTCCGGGGACAGCATCAAATCATCCATTGCTTGGGACGGCAAGGGGGACTGTAGATGGGTGAAAAGAGCAGTCAGAGGACCAGGTCCTCAGCCCCCCAGCCCCCCAGCCCTCCAGGTCCCCAGCCCTCCAGGTCCCCAGCCCAACCCTTGTCCTTACCAGAACGTTGTTTTCAGGAAGTCTGAAAGACAAGAGCAGAAAGTCAGTCCCATGGAATTTTCGCTTCCCACAGGTCTCTGCTAGGGGGCTGGGGTTGGGGTGGGGGTGGTGGGCCTGCCCTTCCAATGGATCCACTCACAGTTTCCATAGGTCTGAAAATGTTTCCTGACTCAGAGGGGGCTCGACGCTAGGATCTGACTGCGGCTCCTCCATGGCAGTGACCCGGAAGGCAGTCTGGCTGCTGCAAGAGGAAAAGT	-			P-0088803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	50	566	0	ENST00000269305.4:c.-28-16_223del		p.X10_splice	ENST00000269305	NM_001126112.2	10																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48593400	48593400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	25	315	0	ENST00000342988.3:c.1151G>A	p.Gly384Asp	p.G384D	ENST00000342988	NM_005359.5	384	gGc/gAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134328	2134328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45517328		P-0088879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			761	78	824	0	ENST00000219476.3:c.4105C>T	p.Arg1369Trp	p.R1369W	ENST00000219476	NM_000548.3	1369	Cgg/Tgg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641735	23641736	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0088879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	143	566	0	ENST00000261584.4:c.1739_1740del	p.Tyr580PhefsTer5	p.Y580Ffs*5	ENST00000261584	NM_024675.3	580	tAT/t																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675438	30675438	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780670990		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	136	496	0	ENST00000376406.3:c.2918C>T	p.Ala973Val	p.A973V	ENST00000376406	NM_014641.2	973	gCg/gTg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			301	36	466	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			103	47	304	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			445	47	521	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	106	655	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	113	486	0	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			458	10	608	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	62	519	0	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	102	563	3	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			315	74	560	9	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
KDM5A	5927	MSKCC	GRCh37	12	420175	420175	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1036242026		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			323	143	439	0	ENST00000399788.2:c.3092G>A	p.Arg1031His	p.R1031H	ENST00000399788	NM_001042603.1	1031	cGc/cAc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			235	71	376	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	86	558	1	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28578289	28578289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373674960		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			247	82	340	0	ENST00000241453.7:c.2882G>A	p.Arg961His	p.R961H	ENST00000241453	NM_004119.2	961	cGt/cAt																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154242	2154242	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1388678905		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			305	68	510	0	ENST00000434045.2:c.686del	p.Pro229GlnfsTer27	p.P229Qfs*27	ENST00000434045	NM_001127598.1	229	cCa/ca																																																																															
ATM	472	MSKCC	GRCh37	11	108216546	108216546	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs529296539		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			175	67	388	0	ENST00000278616.4:c.8495G>A	p.Arg2832His	p.R2832H	ENST00000278616	NM_000051.3	2832	cGt/cAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			177	190	468	0	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs80357522		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			259	88	436	1	ENST00000357654.3:c.1961del	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																															
CIC	23152	MSKCC	GRCh37	19	42796882	42796883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761345552		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	113	635	0	ENST00000575354.2:c.3347dup	p.Ser1117LysfsTer34	p.S1117Kfs*34	ENST00000575354	NM_015125.3	1114	gcc/gCcc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18491390	18491390	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1377942847		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			151	47	370	0	ENST00000266497.5:c.1309del	p.Ile437TyrfsTer5	p.I437Yfs*5	ENST00000266497		435	Aaa/aa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330610	65330611	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			316	103	470	0	ENST00000342505.4:c.1035dup	p.Leu346ThrfsTer4	p.L346Tfs*4	ENST00000342505	NM_002227.2	345	-/A																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411530	63411530	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			136	53	260	1	ENST00000330258.3:c.1637del	p.Leu546CysfsTer16	p.L546Cfs*16	ENST00000330258	NM_152424.3	546	tTg/tg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829974	72829974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			332	52	508	0	ENST00000268489.5:c.6607C>T	p.Arg2203Cys	p.R2203C	ENST00000268489	NM_006885.3	2203	Cgt/Tgt																																																																															
CIC	23152	MSKCC	GRCh37	19	42795608	42795609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			370	106	690	1	ENST00000575354.2:c.2694dup	p.Lys899GlnfsTer32	p.K899Qfs*32	ENST00000575354	NM_015125.3	896	-/C																																																																															
CIC	23152	MSKCC	GRCh37	19	42795006	42795006	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs550975604		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			271	108	567	0	ENST00000575354.2:c.2086C>T	p.Arg696Trp	p.R696W	ENST00000575354	NM_015125.3	696	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604785	48604785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			384	37	491	0	ENST00000342988.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000342988	NM_005359.5	536	cTa/cCa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993515	72993515	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202071159		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			287	110	551	0	ENST00000268489.5:c.530C>T	p.Ala177Val	p.A177V	ENST00000268489	NM_006885.3	177	gCg/gTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			307	60	449	2	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048836	180048836	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			296	85	502	0	ENST00000261937.6:c.1726C>A	p.Leu576Met	p.L576M	ENST00000261937	NM_182925.4	576	Ctg/Atg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060912	38060912	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			225	107	448	0	ENST00000250448.2:c.1077del	p.Ile360Ter	p.I360*	ENST00000250448	NM_004496.3	359	ccC/cc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942053	71942053	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	79	532	1	ENST00000298229.2:c.1322del	p.Asn441ThrfsTer2	p.N441Tfs*2	ENST00000298229	NM_001567.3	439	ccA/cc																																																																															
NF2	4771	MSKCC	GRCh37	22	30057312	30057312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			176	121	464	0	ENST00000338641.4:c.794C>T	p.Ser265Leu	p.S265L	ENST00000338641	NM_000268.3	265	tCg/tTg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743501	46743503	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-	rs746553748		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			321	96	430	0	ENST00000371975.4:c.1885_1887del	p.Glu629del	p.E629del	ENST00000371975	NM_003579.3	628	GAG/-																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998128	169998128	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs753143066		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			259	80	405	3	ENST00000295797.4:c.826del	p.Thr276GlnfsTer7	p.T276Qfs*7	ENST00000295797	NM_002740.5	273	ttA/tt																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38616977	38616977	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			139	51	270	0	ENST00000299084.4:c.395del	p.Asn132MetfsTer20	p.N132Mfs*20	ENST00000299084	NM_152594.2	130	tcA/tc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15995309	15995309	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1366875142		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			383	140	484	0	ENST00000268712.3:c.2884C>T	p.Arg962Ter	p.R962*	ENST00000268712	NM_006311.3	962	Cga/Tga																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9778839	9778839	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			322	102	525	0	ENST00000377346.4:c.1108del	p.Val370CysfsTer28	p.V370Cfs*28	ENST00000377346	NM_005026.3	370	Gtg/tg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932474	39932474	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs398124312		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			128	116	252	0	ENST00000378444.4:c.2125G>A	p.Gly709Ser	p.G709S	ENST00000378444	NM_001123385.1	709	Ggc/Agc																																																																															
RYBP	23429	MSKCC	GRCh37	3	72428494	72428496	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	86	433	0	ENST00000477973.2:c.506_508del	p.Lys170del	p.K170del	ENST00000477973	NM_012234.5	170	AAG/-																																																																															
ALK	238	MSKCC	GRCh37	2	29519919	29519919	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374136388		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			237	59	438	0	ENST00000389048.3:c.1652G>A	p.Arg551Gln	p.R551Q	ENST00000389048	NM_004304.4	551	cGa/cAa																																																																															
ERF	2077	MSKCC	GRCh37	19	42754054	42754055	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			358	21	502	0	ENST00000222329.4:c.297dup	p.Lys100GlufsTer21	p.K100Efs*21	ENST00000222329	NM_006494.2	99	-/G																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576437	67576437	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141981005		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			239	46	376	0	ENST00000274335.5:c.716C>T	p.Thr239Met	p.T239M	ENST00000274335		239	aCg/aTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2193766	2193766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	92	483	0	ENST00000398665.3:c.572C>T	p.Pro191Leu	p.P191L	ENST00000398665	NM_032482.2	191	cCg/cTg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39239433	39239433	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			127	36	308	0	ENST00000402219.2:c.2224del	p.Ile742LeufsTer24	p.I742Lfs*24	ENST00000402219	NM_005633.3	742	Att/tt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523036	25523036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	126	453	0	ENST00000264709.3:c.149G>A	p.Arg50Gln	p.R50Q	ENST00000264709	NM_175629.2	50	cGg/cAg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638998	176638998	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367995675		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			310	100	474	0	ENST00000439151.2:c.3598C>T	p.Arg1200Trp	p.R1200W	ENST00000439151	NM_022455.4	1200	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424443	49424443	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			287	101	463	0	ENST00000301067.7:c.13780del	p.Ala4594ProfsTer23	p.A4594Pfs*23	ENST00000301067	NM_003482.3	4594	Gcc/cc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			237	69	409	2	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
RET	5979	MSKCC	GRCh37	10	43600484	43600484	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	99	462	0	ENST00000355710.3:c.710A>G	p.Tyr237Cys	p.Y237C	ENST00000355710	NM_020975.4	237	tAc/tGc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007315	143007315	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			206	36	302	0	ENST00000262992.4:c.2469T>G	p.Ile823Met	p.I823M	ENST00000262992	NM_001101669.1	823	atT/atG																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118380757	118380758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			285	35	467	0	ENST00000534358.1:c.11001dup	p.Pro3668ThrfsTer8	p.P3668Tfs*8	ENST00000534358	NM_005933.3	3665	-/A																																																																															
PGR	5241	MSKCC	GRCh37	11	100999098	100999098	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750042441		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			194	81	596	0	ENST00000325455.5:c.704C>T	p.Pro235Leu	p.P235L	ENST00000325455	NM_001202474.3	235	cCg/cTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944151	71944151	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1456428824		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			329	78	550	0	ENST00000298229.2:c.1984C>T	p.Arg662Cys	p.R662C	ENST00000298229	NM_001567.3	662	Cgc/Tgc																																																																															
GAB2	9846	MSKCC	GRCh37	11	77937649	77937650	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769890102		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			229	22	333	1	ENST00000361507.4:c.1068dup	p.Lys357GlnfsTer21	p.K357Qfs*21	ENST00000361507	NM_080491.2	356	-/C																																																																															
CDH1	999	MSKCC	GRCh37	16	68847291	68847291	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1336921050		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			306	105	460	2	ENST00000261769.5:c.1213A>G	p.Asn405Asp	p.N405D	ENST00000261769	NM_004360.3	405	Aat/Gat																																																																															
ESR1	2099	MSKCC	GRCh37	6	152415613	152415613	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			296	111	446	0	ENST00000206249.3:c.1463A>C	p.His488Pro	p.H488P	ENST00000206249	NM_000125.3	488	cAc/cCc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47679252	47679252	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			301	24	366	0	ENST00000347630.2:c.955del	p.Thr319LeufsTer53	p.T319Lfs*53	ENST00000347630	NM_001007230.1	319	Act/ct																																																																															
MGA	23269	MSKCC	GRCh37	15	41961795	41961795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			281	91	512	1	ENST00000219905.7:c.703G>A	p.Ala235Thr	p.A235T	ENST00000219905	NM_001164273.1	235	Gca/Aca																																																																															
AXL	558	MSKCC	GRCh37	19	41727952	41727952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			255	60	383	0	ENST00000301178.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000301178	NM_021913.4	193	Cat/Tat																																																																															
CTR9	9646	MSKCC	GRCh37	11	10792083	10792083	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			234	99	471	0	ENST00000361367.2:c.2276T>C	p.Leu759Ser	p.L759S	ENST00000361367	NM_014633.3	759	tTg/tCg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40860921	40860921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			223	77	293	0	ENST00000428826.2:c.1507C>T	p.His503Tyr	p.H503Y	ENST00000428826		503	Cac/Tac																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47425091	47425091	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			353	26	548	0	ENST00000404338.3:c.3163del	p.Asp1055IlefsTer5	p.D1055Ifs*5	ENST00000404338	NM_004491.4	1053	aaG/aa																																																																															
MED12	9968	MSKCC	GRCh37	X	70350038	70350038	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777250096		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			182	11	257	0	ENST00000374080.3:c.4021C>T	p.Arg1341Trp	p.R1341W	ENST00000374080		1341	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56434954	56434954	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			386	114	605	0	ENST00000407977.2:c.2183G>C	p.Cys728Ser	p.C728S	ENST00000407977		728	tGc/tCc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46268698	46268698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	116	496	0	ENST00000371998.3:c.2983G>A	p.Ala995Thr	p.A995T	ENST00000371998		995	Gct/Act																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846319	156846319	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			315	126	452	0	ENST00000524377.1:c.1760T>C	p.Met587Thr	p.M587T	ENST00000524377	NM_002529.3	587	aTg/aCg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148511221	148511221	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			301	77	395	0	ENST00000320356.2:c.1681C>A	p.Arg561Ser	p.R561S	ENST00000320356	NM_004456.4	561	Cgc/Agc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753410	42753410	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1317815490		P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			350	105	618	0	ENST00000222329.4:c.854C>T	p.Pro285Leu	p.P285L	ENST00000222329	NM_006494.2	285	cCg/cTg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88635836	88635836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			162	73	313	0	ENST00000372037.3:c.61G>A	p.Val21Ile	p.V21I	ENST00000372037	NM_004329.2	21	Gtt/Att																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324884	31324884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			268	31	418	0	ENST00000412585.2:c.52G>A	p.Ala18Thr	p.A18T	ENST00000412585	NM_005514.6	18	Gcc/Acc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10260533	10260533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	93	478	0	ENST00000340748.4:c.2329G>A	p.Ala777Thr	p.A777T	ENST00000340748		777	Gca/Aca																																																																															
RAF1	5894	MSKCC	GRCh37	3	12627233	12627233	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs941573221		P-0087744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	23	328	0	ENST00000251849.4:c.1483C>T	p.Arg495Cys	p.R495C	ENST00000251849	NM_002880.3	495	Cgc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831650	72831651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0087744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	111	486	0	ENST00000268489.5:c.4930dup	p.Ser1644LysfsTer18	p.S1644Kfs*18	ENST00000268489	NM_006885.3	1644	agt/aAgt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115263192	115263192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	56	274	0	ENST00000438362.2:c.2158C>T	p.Arg720Cys	p.R720C	ENST00000438362	NM_001242891.1	720	Cgc/Tgc																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150933382	150933382	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1220025296		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	48	367	1	ENST00000271640.5:c.2849del	p.Pro950GlnfsTer16	p.P950Qfs*16	ENST00000271640	NM_001145415.1	948	caC/ca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202858	16202858	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746614090		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	41	322	0	ENST00000375759.3:c.566G>A	p.Arg189Gln	p.R189Q	ENST00000375759	NM_015001.2	189	cGa/cAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	136	436	0	ENST00000324856.7:c.3977dup	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65332758	65332758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	145	342	0	ENST00000342505.4:c.781G>A	p.Val261Met	p.V261M	ENST00000342505	NM_002227.2	261	Gtg/Atg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920413	114920413	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767830105		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	162	288	0	ENST00000543371.1:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000543371	NM_001198531.1	452	Ggg/Agg																																																																															
ATM	472	MSKCC	GRCh37	11	108175528	108175528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs376603775		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	127	301	0	ENST00000278616.4:c.5623C>T	p.Arg1875Ter	p.R1875*	ENST00000278616	NM_000051.3	1875	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108224583	108224583	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730881329		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	148	308	0	ENST00000278616.4:c.8762C>T	p.Thr2921Met	p.T2921M	ENST00000278616	NM_000051.3	2921	aCg/aTg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741925	17741925	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765066996		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	111	282	0	ENST00000250003.3:c.596C>T	p.Ala199Val	p.A199V	ENST00000250003	NM_002478.4	199	gCg/gTg																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154242	2154242	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1388678905		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	142	429	0	ENST00000434045.2:c.686del	p.Pro229GlnfsTer27	p.P229Qfs*27	ENST00000434045	NM_001127598.1	229	cCa/ca																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154760	2154760	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143785521		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	178	391	0	ENST00000434045.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000434045	NM_001127598.1	154	cCg/cTg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138915	64138915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	107	203	0	ENST00000334205.4:c.2287del	p.Arg763AlafsTer21	p.R763Afs*21	ENST00000334205	NM_003942.2	761	gCc/gc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941004	71941004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	204	465	0	ENST00000298229.2:c.884del	p.Pro295GlnfsTer20	p.P295Qfs*20	ENST00000298229	NM_001567.3	294	Ccc/cc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18656263	18656263	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762092026		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	84	267	0	ENST00000266497.5:c.2942G>A	p.Arg981His	p.R981H	ENST00000266497		981	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445500	49445500	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs886042284		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	206	347	1	ENST00000301067.7:c.1966del	p.Leu656CysfsTer274	p.L656Cfs*274	ENST00000301067	NM_003482.3	656	Ctg/tg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	309	376	0	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	140	306	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	198	416	0	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	158	302	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228979	36228979	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	216	407	0	ENST00000222270.7:c.7759C>T	p.Arg2587Ter	p.R2587*	ENST00000222270	NM_014727.1	2587	Cga/Tga																																																																															
CIC	23152	MSKCC	GRCh37	19	42793442	42793442	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748865223		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	145	400	0	ENST00000575354.2:c.1244G>A	p.Arg415Gln	p.R415Q	ENST00000575354	NM_015125.3	415	cGg/cAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231510	5231510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	131	329	0	ENST00000357368.4:c.1966G>A	p.Val656Ile	p.V656I	ENST00000357368	NM_002850.3	656	Gtc/Atc																																																																															
INHA	3623	MSKCC	GRCh37	2	220440081	220440081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	136	401	0	ENST00000243786.2:c.934C>T	p.Pro312Ser	p.P312S	ENST00000243786	NM_002191.3	312	Cct/Tct																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026852	48026852	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376220212		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	44	365	0	ENST00000234420.5:c.1730G>A	p.Arg577His	p.R577H	ENST00000234420	NM_000179.2	577	cGc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101118	41101118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751886972		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	144	387	0	ENST00000373198.4:c.1238C>T	p.Ala413Val	p.A413V	ENST00000373198	NM_133170.3	413	gCg/gTg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252852	36252852	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	118	253	0	ENST00000300305.3:c.508+2T>C		p.X170_splice	ENST00000300305		170																																																																																
ATR	545	MSKCC	GRCh37	3	142177876	142177876	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777776233		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	131	267	0	ENST00000350721.4:c.7427G>A	p.Arg2476His	p.R2476H	ENST00000350721	NM_001184.3	2476	cGt/cAt																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114152	73114152	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777393029		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	165	329	0	ENST00000356692.5:c.788C>T	p.Thr263Met	p.T263M	ENST00000356692		263	aCg/aTg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	194	393	3	ENST00000382895.3:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382895	NM_133330.2	1341	Ccc/cc																																																																															
KDR	3791	MSKCC	GRCh37	4	55972955	55972955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	91	246	0	ENST00000263923.4:c.1435C>T	p.Pro479Ser	p.P479S	ENST00000263923	NM_002253.2	479	Cca/Tca																																																																															
MSH3	4437	MSKCC	GRCh37	5	80064704	80064705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs751236312		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	42	237	0	ENST00000265081.6:c.2141dup	p.Arg715GlufsTer4	p.R715Efs*4	ENST00000265081	NM_002439.4	712	ata/atAa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	127	245	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64288882	64288882	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773307144		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	103	231	0	ENST00000370651.3:c.278G>A	p.Arg93His	p.R93H	ENST00000370651	NM_003463.4	93	cGt/cAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	101	260	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139811047	139811047	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs559816825		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	53	271	0	ENST00000247668.2:c.658G>A	p.Ala220Thr	p.A220T	ENST00000247668	NM_021138.3	220	Gcc/Acc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923680	39923681	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	162	322	0	ENST00000378444.4:c.3410_3411del	p.Lys1137SerfsTer4	p.K1137Sfs*4	ENST00000378444	NM_001123385.1	1137	aAA/a																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411522	63411522	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746279756		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	172	449	0	ENST00000330258.3:c.1645C>T	p.Arg549Trp	p.R549W	ENST00000330258	NM_152424.3	549	Cgg/Tgg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	94	348	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
AR	367	MSKCC	GRCh37	X	66766357	66766365	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-	rs1430200281		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	12	118	0	ENST00000374690.3:c.1412_1420del	p.Gly471_Gly473del	p.G471_G473del	ENST00000374690	NM_000044.3	457	GGCGGCGGC/-																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120510751	120510751	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	143	349	0	ENST00000256646.2:c.1213C>T	p.Gln405Ter	p.Q405*	ENST00000256646	NM_024408.3	405	Caa/Taa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255155	16255155	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149173601		P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	42	443	0	ENST00000375759.3:c.2420G>A	p.Arg807His	p.R807H	ENST00000375759	NM_015001.2	807	cGc/cAc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850682	63850682	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	174	340	0	ENST00000279873.7:c.1460C>A	p.Pro487His	p.P487H	ENST00000279873	NM_032199.2	487	cCt/cAt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118369199	118369199	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	199	337	0	ENST00000534358.1:c.5922del	p.Val1975TyrfsTer9	p.V1975Yfs*9	ENST00000534358	NM_005933.3	1973	Aaa/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437992	49437992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	71	398	1	ENST00000301067.7:c.5179C>T	p.Pro1727Ser	p.P1727S	ENST00000301067	NM_003482.3	1727	Ccc/Tcc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37646869	37646872	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	151	286	0	ENST00000447079.4:c.1994_1997del	p.Leu665SerfsTer87	p.L665Sfs*87	ENST00000447079	NM_015083.1	664	cACTTa/ca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448302	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGG	GGGGG	-			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	361	418	0	ENST00000407977.2:c.345_349del	p.Arg117LeufsTer6	p.R117Lfs*6	ENST00000407977		115	gcCCCCCgc/gcgc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7218276	7218276	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	92	280	0	ENST00000380728.2:c.94+2T>C		p.X32_splice	ENST00000380728		32																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36208996	36209001	+	inframe_deletion	In_Frame_Del	DEL	GGCGCC	GGCGCC	-			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	53	91	0	ENST00000222270.7:c.80_85del	p.Ala27_Gly28del	p.A27_G28del	ENST00000222270	NM_014727.1	26	GGCGCC/-																																																																															
INSR	3643	MSKCC	GRCh37	19	7122943	7122943	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	168	313	0	ENST00000302850.5:c.3316A>G	p.Met1106Val	p.M1106V	ENST00000302850	NM_000208.2	1106	Atg/Gtg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248618	212248618	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	153	336	0	ENST00000342788.4:c.3649G>T	p.Gly1217Ter	p.G1217*	ENST00000342788	NM_005235.2	1217	Gga/Tga																																																																															
CRKL	1399	MSKCC	GRCh37	22	21272508	21272508	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	227	438	0	ENST00000354336.3:c.286A>G	p.Thr96Ala	p.T96A	ENST00000354336	NM_005207.3	96	Acc/Gcc																																																																															
BCL6	604	MSKCC	GRCh37	3	187443366	187443366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	134	356	0	ENST00000232014.4:c.1760C>T	p.Ala587Val	p.A587V	ENST00000232014	NM_001130845.1	587	gCc/gTc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52685772	52685772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	100	289	0	ENST00000394830.3:c.700G>A	p.Ala234Thr	p.A234T	ENST00000394830	NM_018313.4	234	Gcc/Acc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1976648	1976648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	217	342	0	ENST00000382895.3:c.3431G>A	p.Cys1144Tyr	p.C1144Y	ENST00000382895	NM_133330.2	1144	tGc/tAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176639035	176639035	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	202	344	0	ENST00000439151.2:c.3635G>C	p.Ser1212Thr	p.S1212T	ENST00000439151	NM_022455.4	1212	aGc/aCc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502178	157502178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	178	308	0	ENST00000346085.5:c.3211C>T	p.Leu1071Phe	p.L1071F	ENST00000346085	NM_020732.3	1071	Ctc/Ttc																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31238256	31238256	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	187	416	0	ENST00000376228.5:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000376228	NM_002117.5	209	cCa/ca																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966653	36966653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	90	353	0	ENST00000358127.4:c.673C>T	p.Arg225Trp	p.R225W	ENST00000358127	NM_001280556.1	225	Cgg/Tgg																																																																															
BTK	695	MSKCC	GRCh37	X	100609672	100609672	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0088774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	131	268	0	ENST00000308731.7:c.1577del	p.Asn526ThrfsTer4	p.N526Tfs*4	ENST00000308731	NM_000061.2	526	aAc/ac																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174418	11174418	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	105	323	0	ENST00000361445.4:c.7257A>C	p.Glu2419Asp	p.E2419D	ENST00000361445	NM_004958.3	2419	gaA/gaC																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101698	27101701	+	frameshift_variant	Frame_Shift_Del	DEL	AATG	AATG	-			P-0077385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	123	454	0	ENST00000324856.7:c.4982_4985del	p.Met1661LysfsTer11	p.M1661Kfs*11	ENST00000324856	NM_006015.4	1660	acAATG/ac																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627265	14627296	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGGCACCTTACCTCCCGGAGGCTGATCCTG	CCTGGCACCTTACCTCCCGGAGGCTGATCCTG	-			P-0077385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	167	502	0	ENST00000254322.2:c.774_792+13del		p.X258_splice	ENST00000254322	NM_006145.1	258																																																																																
ATM	472	MSKCC	GRCh37	11	108199885	108199885	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	126	384	0	ENST00000278616.4:c.7227A>C	p.Glu2409Asp	p.E2409D	ENST00000278616	NM_000051.3	2409	gaA/gaC																																																																															
ATM	472	MSKCC	GRCh37	11	108199899	108199899	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	132	389	0	ENST00000278616.4:c.7241A>C	p.Gln2414Pro	p.Q2414P	ENST00000278616	NM_000051.3	2414	cAa/cCa																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074148	8074148	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	67	420	0	ENST00000377482.5:c.511G>C	p.Val171Leu	p.V171L	ENST00000377482	NM_018948.3	171	Gtg/Ctg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057642	27057642	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0087631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			386	39	357	0	ENST00000324856.7:c.1351-1G>A		p.X451_splice	ENST00000324856	NM_006015.4	451																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72831096	72831096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			605	33	361	0	ENST00000268489.5:c.5485C>T	p.Pro1829Ser	p.P1829S	ENST00000268489	NM_006885.3	1829	Cca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882019		P-0087631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			701	70	456	0	ENST00000269305.4:c.455dup	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17950459	17950459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			421	37	328	0	ENST00000458235.1:c.1268C>T	p.Pro423Leu	p.P423L	ENST00000458235	NM_000215.3	423	cCt/cTt																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14037526	14038548	+	intron_variant	Intron	DEL	GATGGTTCCTCTTCTGTTCCCCTCACCTTAGTCTGTTTTATCGCAGTTCCTCAGTTCCAGTTGTTTTTTTTTTTCTTCTCATGTTTGCTTTGTTCCCTCGACATCAGTTGTGAACCCAAGCAGGGAAGAGACTCAGCTTATATATCTTTTCTGTCATACCTGGCAGAATTAATTATAACATACTTTATCAATTTTGAAAAATAAAGCTACCGCAAACCTGGCTTACTCTTTCTGTGATTATTGAGGATCTTGTCATGATGTAGTTCCAAATTGCGAATCTTAGTTATGATTGTACTGTCCTCTAGATCTACCGTATAAGATATGAGCCACCTTGAAGACAGGAATTCTTGCGTGATCACGATTATATCCAAAGTACCTAGAGCACCACGCAGGAACACTCCATAAATGTTTTTCAATAAATGCATGAGTGAGTAATGAATGCTGCTCCCAAGGCATAACCTGAGCTGTTGATTTTTTGTTTTAATCTCTGATAGAAATTTGATTTCTTATATCTATTTCAAAATCTTGATCTTGATTTTCCTTTAAAACTCAGGGTGTTTAATGGGACCTCCCACCTGGAGTTTTTAACATCAAAATTCTATCATATATGTTTTTTAGTTTCTTAATGATTTTTAACCACCCCTATTTGTGATTACCCTGAAAATGTTTGAATATAAATGATTTACATTTACACTTTAACCTTACAAACAGTCTCAAGAATCTCTTGGTGGCATTTTTTACATGTGGCATTTTTTGACATGCTTGTGTTGTTTCTTAAATATTTGAATATAAAGTCAAAATAAACAACTGCTTTTTTTACTCTGGAAAATCAAGAAGTAGTATCCGACCAAGGCACTTTTTACTGACTTTTTCTACTTCCTTTACCCATCATTTGTCTTGGCATATTTACTTCTAATATATTCCTTGTTTTTGTTTTTGTTTTTCTCTTACTGCTATCATCATGTAGATCATTTTCAATACTACAATTTACACACAATAAAATCTAGAATTTTGAAATTTGTT	GATGGTTCCTCTTCTGTTCCCCTCACCTTAGTCTGTTTTATCGCAGTTCCTCAGTTCCAGTTGTTTTTTTTTTTCTTCTCATGTTTGCTTTGTTCCCTCGACATCAGTTGTGAACCCAAGCAGGGAAGAGACTCAGCTTATATATCTTTTCTGTCATACCTGGCAGAATTAATTATAACATACTTTATCAATTTTGAAAAATAAAGCTACCGCAAACCTGGCTTACTCTTTCTGTGATTATTGAGGATCTTGTCATGATGTAGTTCCAAATTGCGAATCTTAGTTATGATTGTACTGTCCTCTAGATCTACCGTATAAGATATGAGCCACCTTGAAGACAGGAATTCTTGCGTGATCACGATTATATCCAAAGTACCTAGAGCACCACGCAGGAACACTCCATAAATGTTTTTCAATAAATGCATGAGTGAGTAATGAATGCTGCTCCCAAGGCATAACCTGAGCTGTTGATTTTTTGTTTTAATCTCTGATAGAAATTTGATTTCTTATATCTATTTCAAAATCTTGATCTTGATTTTCCTTTAAAACTCAGGGTGTTTAATGGGACCTCCCACCTGGAGTTTTTAACATCAAAATTCTATCATATATGTTTTTTAGTTTCTTAATGATTTTTAACCACCCCTATTTGTGATTACCCTGAAAATGTTTGAATATAAATGATTTACATTTACACTTTAACCTTACAAACAGTCTCAAGAATCTCTTGGTGGCATTTTTTACATGTGGCATTTTTTGACATGCTTGTGTTGTTTCTTAAATATTTGAATATAAAGTCAAAATAAACAACTGCTTTTTTTACTCTGGAAAATCAAGAAGTAGTATCCGACCAAGGCACTTTTTACTGACTTTTTCTACTTCCTTTACCCATCATTTGTCTTGGCATATTTACTTCTAATATATTCCTTGTTTTTGTTTTTGTTTTTCTCTTACTGCTATCATCATGTAGATCATTTTCAATACTACAATTTACACACAATAAAATCTAGAATTTTGAAATTTGTT	-			P-0087631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	20	256	0	ENST00000311895.7:c.1905-1054_1905-32del		p.*635*	ENST00000311895	NM_005236.2																																																																																	
ALK	238	MSKCC	GRCh37	2	29449805	29449805	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0087631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			911	59	570	0	ENST00000389048.3:c.3050A>T	p.Asp1017Val	p.D1017V	ENST00000389048	NM_004304.4	1017	gAt/gTt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573784	64573784	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0088849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	190	657	0	ENST00000337652.1:c.984C>G	p.Tyr328Ter	p.Y328*	ENST00000337652	NM_130803.2	328	taC/taG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080429-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			440	114	257	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933212	39933212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080429-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			411	50	277	0	ENST00000378444.4:c.1387C>T	p.Pro463Ser	p.P463S	ENST00000378444	NM_001123385.1	463	Ccc/Tcc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732947	30732947	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080429-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			592	109	457	0	ENST00000359013.4:c.1635C>G	p.Cys545Trp	p.C545W	ENST00000359013	NM_001024847.2	545	tgC/tgG																																																																															
APC	324	MSKCC	GRCh37	5	112175391	112175391	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080429-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			678	50	412	0	ENST00000257430.4:c.4100A>G	p.Gln1367Arg	p.Q1367R	ENST00000257430	NM_000038.5	1367	cAg/cGg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148543659	148543659	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs775407864		P-0088298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	36	260	0	ENST00000320356.2:c.149T>C	p.Leu50Ser	p.L50S	ENST00000320356	NM_004456.4	50	tTg/tCg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200914	67200914	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	48	274	0	ENST00000312629.5:c.902A>G	p.Lys301Arg	p.K301R	ENST00000312629	NM_003952.2	301	aAa/aGa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088739	27088739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	105	270	0	ENST00000324856.7:c.2348C>A	p.Thr783Lys	p.T783K	ENST00000324856	NM_006015.4	783	aCa/aAa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198264999	198264999	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	58	334	0	ENST00000335508.6:c.2878G>T	p.Val960Phe	p.V960F	ENST00000335508	NM_012433.2	960	Gtt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786202962		P-0088591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			784	85	464	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209504	98209504	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766315655		P-0088591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	62	448	0	ENST00000331920.6:c.4034G>A	p.Arg1345His	p.R1345H	ENST00000331920	NM_000264.3	1345	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0088591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	44	358	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
CALR	811	MSKCC	GRCh37	19	13054384	13054384	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	66	408	0	ENST00000316448.5:c.994A>G	p.Ile332Val	p.I332V	ENST00000316448	NM_004343.3	332	Atc/Gtc																																																																															
KLF5	688	MSKCC	GRCh37	13	73636451	73636451	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0088591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			884	80	491	0	ENST00000377687.4:c.714T>G	p.Asp238Glu	p.D238E	ENST00000377687	NM_001730.3	238	gaT/gaG																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910647	29910647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	51	1082	0	ENST00000376809.5:c.187G>A	p.Asp63Asn	p.D63N	ENST00000376809	NM_002116.7	63	Gac/Aac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307357	118307357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	36	241	0	ENST00000534358.1:c.130C>T	p.Pro44Ser	p.P44S	ENST00000534358	NM_005933.3	44	Ccc/Tcc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716316	52716316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	28	588	0	ENST00000322088.6:c.760G>A	p.Asp254Asn	p.D254N	ENST00000322088	NM_014225.5	254	Gac/Aac																																																																															
SMO	6608	MSKCC	GRCh37	7	128829015	128829015	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	18	399	0	ENST00000249373.3:c.23G>T	p.Arg8Leu	p.R8L	ENST00000249373	NM_005631.4	8	cGg/cTg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289081	33289081	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	130	778	0	ENST00000374542.5:c.471del	p.Asn158IlefsTer71	p.N158Ifs*71	ENST00000374542	NM_001141970.1	157	ggG/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579440	7579440	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	312	1046	0	ENST00000269305.4:c.247del	p.Ala83ArgfsTer40	p.A83Rfs*40	ENST00000269305	NM_001126112.2	83	Gcg/cg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107095	27107096	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0088739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			908	122	900	0	ENST00000324856.7:c.6711_6712del	p.Leu2238AlafsTer39	p.L2238Afs*39	ENST00000324856	NM_006015.4	2236	CGc/c																																																																															
ATM	472	MSKCC	GRCh37	11	108106477	108106477	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0088739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	86	678	1	ENST00000278616.4:c.412G>T	p.Gly138Ter	p.G138*	ENST00000278616	NM_000051.3	138	Gga/Tga																																																																															
MPL	4352	MSKCC	GRCh37	1	43805740	43805740	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			793	77	789	0	ENST00000372470.3:c.796G>T	p.Gly266Cys	p.G266C	ENST00000372470	NM_005373.2	266	Ggt/Tgt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180040030	180040031	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0088739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	169	857	0	ENST00000261937.6:c.3411_3412delinsTT	p.Glu1138Ter	p.E1138*	ENST00000261937	NM_182925.4	1137	ccGGag/ccTTag																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750479	41750479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	131	772	0	ENST00000226382.2:c.149C>T	p.Thr50Ile	p.T50I	ENST00000226382	NM_003924.3	50	aCt/aTt																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793761	89793761	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			709	173	704	0	ENST00000336032.3:c.830A>G	p.Glu277Gly	p.E277G	ENST00000336032	NM_006813.2	277	gAa/gGa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95599014	95599014	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0088739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	54	531	0	ENST00000343455.3:c.145G>A	p.Val49Ile	p.V49I	ENST00000343455	NM_177438.2	49	Gtt/Att																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781794	3781794	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	80	822	0	ENST00000262367.5:c.4873A>G	p.Met1625Val	p.M1625V	ENST00000262367	NM_004380.2	1625	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0088752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	101	489	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0088753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	1080	311	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0088753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	130	372	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0088758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	32	275	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0088758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	58	456	0	ENST00000269305.4:c.470T>A	p.Val157Asp	p.V157D	ENST00000269305	NM_001126112.2	157	gTc/gAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603035	48603035	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0088758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	52	285	0	ENST00000342988.3:c.1336C>T	p.Gln446Ter	p.Q446*	ENST00000342988	NM_005359.5	446	Cag/Tag																																																																															
CDH1	999	MSKCC	GRCh37	16	68857268	68857331	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGTCTCATCATTTCTTTTTATTGCTTTCTCCAGCCCAAGAATCTATCATTTTGAAGCCAAAGA	TGGTCTCATCATTTCTTTTTATTGCTTTCTCCAGCCCAAGAATCTATCATTTTGAAGCCAAAGA	-			P-0088758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	32	267	0	ENST00000261769.5:c.1937-31_1969del		p.X646_splice	ENST00000261769	NM_004360.3	646																																																																																
TP53	7157	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520001		P-0088764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	195	534	0	ENST00000269305.4:c.645T>G	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agG																																																																															
APC	324	MSKCC	GRCh37	5	112175977	112175977	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	153	501	0	ENST00000257430.4:c.4687del	p.Leu1563TyrfsTer2	p.L1563Yfs*2	ENST00000257430	NM_000038.5	1562	gaC/ga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061214	38061240	+	inframe_deletion	In_Frame_Del	DEL	AGCAGCCGTTCTCGAACATGTTGCCGG	AGCAGCCGTTCTCGAACATGTTGCCGG	-			P-0088764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	130	499	0	ENST00000250448.2:c.749_775del	p.Ser250_Cys258del	p.S250_C258del	ENST00000250448	NM_004496.3	250	tCCGGCAACATGTTCGAGAACGGCTGCTac/tac																																																																															
ATM	472	MSKCC	GRCh37	11	108151759	108151759	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0088764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	81	340	0	ENST00000278616.4:c.3442del	p.Tyr1148IlefsTer8	p.Y1148Ifs*8	ENST00000278616	NM_000051.3	1147	aTt/at																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0088765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	13	348	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101099	27101099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0088765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	39	477	0	ENST00000324856.7:c.4381C>T	p.Arg1461Ter	p.R1461*	ENST00000324856	NM_006015.4	1461	Cga/Tga																																																																															
MSI1	4440	MSKCC	GRCh37	12	120794779	120794779	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768324684		P-0088765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	35	464	0	ENST00000257552.2:c.578C>T	p.Thr193Met	p.T193M	ENST00000257552	NM_002442.3	193	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0088765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	14	313	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157454311	157454311	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150249745		P-0088765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	35	450	0	ENST00000346085.5:c.2521G>A	p.Gly841Ser	p.G841S	ENST00000346085	NM_020732.3	841	Ggt/Agt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247173	153247173	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0088765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	50	368	0	ENST00000281708.4:c.1629A>C	p.Arg543Ser	p.R543S	ENST00000281708	NM_033632.3	543	agA/agC																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374293	138374293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	76	409	0	ENST00000289153.2:c.3151G>A	p.Glu1051Lys	p.E1051K	ENST00000289153	NM_006219.2	1051	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578502	7578502	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0088816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	79	508	0	ENST00000269305.4:c.428T>G	p.Val143Gly	p.V143G	ENST00000269305	NM_001126112.2	143	gTg/gGg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789684	3789684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	26	415	0	ENST00000262367.5:c.4175G>A	p.Arg1392Gln	p.R1392Q	ENST00000262367	NM_004380.2	1392	cGa/cAa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59853848	59853848	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0088816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	19	390	0	ENST00000259008.2:c.2011G>C	p.Glu671Gln	p.E671Q	ENST00000259008	NM_032043.2	671	Gag/Cag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11298651	11298651	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1235010967		P-0088816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	29	413	0	ENST00000361445.4:c.1810C>T	p.Arg604Cys	p.R604C	ENST00000361445	NM_004958.3	604	Cgc/Tgc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10244964	10244964	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1248265917		P-0088816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	43	302	0	ENST00000340748.4:c.4745C>T	p.Pro1582Leu	p.P1582L	ENST00000340748		1582	cCg/cTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3656520	3656520	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0088816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	28	472	0	ENST00000294008.3:c.715G>C	p.Glu239Gln	p.E239Q	ENST00000294008	NM_032444.2	239	Gaa/Caa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740231	162740231	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773598662		P-0088816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	77	499	0	ENST00000367921.3:c.1433G>A	p.Arg478His	p.R478H	ENST00000367921	NM_006182.2	478	cGc/cAc																																																																															
RAD51	5888	MSKCC	GRCh37	15	40998378	40998378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	33	282	0	ENST00000267868.3:c.229G>A	p.Glu77Lys	p.E77K	ENST00000267868	NM_002875.4	77	Gag/Aag																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266822	18266822	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753372060		P-0088816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	115	463	0	ENST00000222254.8:c.133G>A	p.Glu45Lys	p.E45K	ENST00000222254	NM_005027.3	45	Gag/Aag																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646525	23646525	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0088816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	49	375	0	ENST00000261584.4:c.1342A>T	p.Ser448Cys	p.S448C	ENST00000261584	NM_024675.3	448	Agt/Tgt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098979	178098979	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	107	395	0	ENST00000397062.3:c.66A>G	p.Ile22Met	p.I22M	ENST00000397062	NM_006164.4	22	atA/atG																																																																															
BARD1	580	MSKCC	GRCh37	2	215645739	215645739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	57	417	0	ENST00000260947.4:c.859G>A	p.Glu287Lys	p.E287K	ENST00000260947	NM_000465.2	287	Gag/Aag																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630530	47630530	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	115	380	0	ENST00000233146.2:c.200T>C	p.Met67Thr	p.M67T	ENST00000233146	NM_000251.2	67	aTg/aCg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560955	9560955	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	74	449	0	ENST00000353224.5:c.827C>A	p.Thr276Lys	p.T276K	ENST00000353224	NM_177990.2	276	aCa/aAa																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128206872	128206872	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	66	340	1	ENST00000265960.3:c.1351G>T	p.Ala451Ser	p.A451S	ENST00000265960	NM_001006617.1	451	Gca/Tca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549435	187549435	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0088816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	264	422	0	ENST00000441802.2:c.4683G>A	p.Trp1561Ter	p.W1561*	ENST00000441802	NM_005245.3	1561	tgG/tgA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428416	49428417	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0088816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	77	521	0	ENST00000301067.7:c.10388_10389del	p.Ser3463TrpfsTer4	p.S3463Wfs*4	ENST00000301067	NM_003482.3	3463	tCG/t																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38953576	38953576	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0088816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	51	285	0	ENST00000357387.3:c.2777C>G	p.Ser926Cys	p.S926C	ENST00000357387	NM_152756.3	926	tCt/tGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485275	8485275	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	81	341	0	ENST00000356435.5:c.3105G>T	p.Leu1035Phe	p.L1035F	ENST00000356435		1035	ttG/ttT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436663	49436663	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0088816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	32	450	0	ENST00000301067.7:c.5645-2A>G		p.X1882_splice	ENST00000301067	NM_003482.3	1882																																																																																
KLF4	9314	MSKCC	GRCh37	9	110250280	110250280	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0088816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	26	490	0	ENST00000374672.4:c.395C>G	p.Ser132Cys	p.S132C	ENST00000374672	NM_004235.4	132	tCt/tGt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902633	50902633	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs147911699		P-0088816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	70	415	0	ENST00000440232.2:c.208G>T	p.Val70Phe	p.V70F	ENST00000440232	NM_002691.3	70	Gtc/Ttc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18762541	18762541	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	20	291	0	ENST00000266497.5:c.4037T>C	p.Leu1346Pro	p.L1346P	ENST00000266497		1346	cTa/cCa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767345		P-0088679-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	19	422	0	ENST00000342988.3:c.1055G>A	p.Gly352Glu	p.G352E	ENST00000342988	NM_005359.5	352	gGa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519980		P-0088679-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	11	510	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0088679-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	23	214	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111006	193111006	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	104	350	0	ENST00000367435.3:c.544del	p.Ile182LeufsTer20	p.I182Lfs*20	ENST00000367435	NM_024529.4	180	gAa/ga																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2491277	2491277	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374643973		P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	150	414	0	ENST00000355716.4:c.320C>T	p.Ala107Val	p.A107V	ENST00000355716	NM_003820.2	107	gCg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27059207	27059207	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	123	363	0	ENST00000324856.7:c.1848del	p.Ser617GlnfsTer2	p.S617Qfs*2	ENST00000324856	NM_006015.4	615	gCc/gc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101375	27101375	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	168	339	0	ENST00000324856.7:c.4661del	p.Pro1554HisfsTer11	p.P1554Hfs*11	ENST00000324856	NM_006015.4	1553	Ccc/cc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798968	45798968	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781444		P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			802	75	548	0	ENST00000372115.3:c.335G>A	p.Arg112Gln	p.R112Q	ENST00000372115	NM_001048171.1	112	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925402	114925402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs768101780		P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	191	310	0	ENST00000543371.1:c.1485del	p.Ser496ProfsTer5	p.S496Pfs*5	ENST00000543371	NM_001198531.1	494	Ccc/cc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136030	64136030	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1380280944		P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	34	451	0	ENST00000334205.4:c.1291C>T	p.Arg431Cys	p.R431C	ENST00000334205	NM_003942.2	431	Cgc/Tgc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435598	110435598	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	143	357	0	ENST00000375856.3:c.2803G>T	p.Ala935Ser	p.A935S	ENST00000375856	NM_003749.2	935	Gcg/Tcg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913559	32913559	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1376347173		P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	124	377	3	ENST00000380152.3:c.5073del	p.Lys1691AsnfsTer15	p.K1691Nfs*15	ENST00000380152		1689	gcA/gc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41239932	41239933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	40	229	0	ENST00000379561.5:c.417dup	p.Ala140ArgfsTer61	p.A140Rfs*61	ENST00000379561	NM_002015.3	139	-/C																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060881	38060881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs902772971		P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	166	515	0	ENST00000250448.2:c.1108G>A	p.Val370Met	p.V370M	ENST00000250448	NM_004496.3	370	Gtg/Atg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			827	57	490	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	319	459	2	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37882875	37882875	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778243900		P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	161	463	0	ENST00000269571.5:c.2933G>A	p.Arg978His	p.R978H	ENST00000269571		978	cGc/cAc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	162	443	1	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	384	587	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144509	11144509	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587778685		P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	30	334	0	ENST00000344626.4:c.3841G>A	p.Val1281Ile	p.V1281I	ENST00000344626	NM_003072.3	1281	Gtc/Atc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296128	15296128	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1481559244		P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	148	468	0	ENST00000263388.2:c.2236G>A	p.Gly746Ser	p.G746S	ENST00000263388	NM_000435.2	746	Ggt/Agt																																																																															
UPF1	5976	MSKCC	GRCh37	19	18943157	18943157	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	75	193	0	ENST00000262803.5:c.144del	p.Gly49AlafsTer45	p.G49Afs*45	ENST00000262803	NM_002911.3	47	Ccc/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214821	36214821	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	167	354	1	ENST00000222270.7:c.3247C>T	p.Arg1083Ter	p.R1083*	ENST00000222270	NM_014727.1	1083	Cga/Tga																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096503	178096504	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	150	393	0	ENST00000397062.3:c.827_828del	p.Thr276SerfsTer7	p.T276Sfs*7	ENST00000397062	NM_006164.4	276	aCA/a																																																																															
CASP8	841	MSKCC	GRCh37	2	202150022	202150022	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	183	457	0	ENST00000358485.4:c.1463T>C	p.Leu488Pro	p.L488P	ENST00000358485	NM_001080125.1	488	cTg/cCg																																																																															
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	114	306	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																															
CUL3	8452	MSKCC	GRCh37	2	225378265	225378266	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	90	253	0	ENST00000264414.4:c.629dup	p.Leu210PhefsTer20	p.L210Ffs*20	ENST00000264414	NM_003590.4	210	ttg/ttTg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446275	29446275	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	131	450	0	ENST00000544604.2:c.2111del	p.Gly704AlafsTer69	p.G704Afs*69	ENST00000544604	NM_001206998.1	702	aaG/aa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851848	134851848	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	138	543	0	ENST00000398015.3:c.1259del	p.Pro420HisfsTer28	p.P420Hfs*28	ENST00000398015	NM_004441.4	418	ttC/tt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911523	134911523	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749562219		P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	149	449	0	ENST00000398015.3:c.1988G>A	p.Arg663Gln	p.R663Q	ENST00000398015	NM_004441.4	663	cGg/cAg																																																																															
TET2	54790	MSKCC	GRCh37	4	106158231	106158231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	157	441	0	ENST00000380013.4:c.3132G>T	p.Lys1044Asn	p.K1044N	ENST00000380013	NM_001127208.2	1044	aaG/aaT																																																																															
KIT	3815	MSKCC	GRCh37	4	55589809	55589809	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs962542157		P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	95	254	0	ENST00000288135.5:c.1291G>T	p.Ala431Ser	p.A431S	ENST00000288135	NM_000222.2	431	Gca/Tca																																																																															
TERT	7015	MSKCC	GRCh37	5	1294665	1294665	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	135	399	1	ENST00000310581.5:c.336del	p.Glu113ArgfsTer15	p.E113Rfs*15	ENST00000310581	NM_198253.2	112	ccC/cc																																																																															
TERT	7015	MSKCC	GRCh37	5	1296155	1296155	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	194	566	0				ENST00000310581	NM_198253.2																																																																																	
MSH3	4437	MSKCC	GRCh37	5	79970922	79970922	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs71539687		P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	116	320	0	ENST00000265081.6:c.1148A>G	p.Lys383Arg	p.K383R	ENST00000265081	NM_002439.4	383	aAg/aGg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202351	138202351	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	145	448	0	ENST00000237289.4:c.2274del	p.Lys759SerfsTer57	p.K759Sfs*57	ENST00000237289	NM_001270507.1	756	gaC/ga																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910638	29910638	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			807	153	599	0	ENST00000376809.5:c.178T>C	p.Phe60Leu	p.F60L	ENST00000376809	NM_002116.7	60	Ttc/Ctc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800121	32800122	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	184	430	0	ENST00000374899.4:c.1260dup	p.Ser421GlufsTer62	p.S421Efs*62	ENST00000374899	NM_018833.2	420	-/G																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	122	294	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946436	2946436	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761965340		P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	141	447	0	ENST00000396946.4:c.3301C>T	p.Arg1101Cys	p.R1101C	ENST00000396946	NM_032415.4	1101	Cgc/Tgc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	109	357	6	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	252	386	2	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538946	23538946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	146	463	0	ENST00000380871.4:c.493G>A	p.Glu165Lys	p.E165K	ENST00000380871	NM_006167.3	165	Gag/Aag																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772951	135772951	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs397514875		P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	119	305	0	ENST00000298552.3:c.2672del	p.Asn891ThrfsTer40	p.N891Tfs*40	ENST00000298552	NM_001162426.1	891	aAc/ac																																																																															
TSC1	7248	MSKCC	GRCh37	9	135785964	135785964	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs118203506		P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	112	399	0	ENST00000298552.3:c.1257del	p.Arg420GlyfsTer20	p.R420Gfs*20	ENST00000298552	NM_001162426.1	419	ccC/cc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405201	139405201	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767886377		P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	150	421	0	ENST00000277541.6:c.2644G>A	p.Ala882Thr	p.A882T	ENST00000277541	NM_017617.3	882	Gca/Aca																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882050	36882050	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	125	443	5	ENST00000358127.4:c.963del	p.Ala322LeufsTer11	p.A322Lfs*11	ENST00000358127	NM_001280556.1	321	ccC/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	116	401	0	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229649	98229649	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762942660		P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	175	333	0	ENST00000331920.6:c.2309G>A	p.Arg770Gln	p.R770Q	ENST00000331920	NM_000264.3	770	cGa/cAa																																																																															
ATRX	546	MSKCC	GRCh37	X	76889121	76889121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	92	135	0	ENST00000373344.5:c.4889C>T	p.Thr1630Ile	p.T1630I	ENST00000373344	NM_000489.3	1630	aCt/aTt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175957534	175957534	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	126	360	0	ENST00000367669.3:c.1862A>G	p.Gln621Arg	p.Q621R	ENST00000367669	NM_022457.5	621	cAg/cGg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94204883	94204884	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	79	286	0	ENST00000323929.3:c.701dup	p.Leu234PhefsTer3	p.L234Ffs*3	ENST00000323929	NM_005591.3	234	ttg/ttTg																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544630	86544630	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	134	504	0	ENST00000262426.4:c.455A>G	p.Lys152Arg	p.K152R	ENST00000262426	NM_001451.2	152	aAg/aGg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16021339	16021339	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	118	298	0	ENST00000268712.3:c.1918C>G	p.Leu640Val	p.L640V	ENST00000268712	NM_006311.3	640	Cta/Gta																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659854	227659854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	96	199	1	ENST00000305123.5:c.3601C>T	p.Pro1201Ser	p.P1201S	ENST00000305123	NM_005544.2	1201	Cct/Tct																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445244	29445244	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	164	478	0	ENST00000544604.2:c.1075C>T	p.Gln359Ter	p.Q359*	ENST00000544604	NM_001206998.1	359	Cag/Tag																																																																															
RAF1	5894	MSKCC	GRCh37	3	12653530	12653530	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	114	332	1	ENST00000251849.4:c.239A>G	p.Asp80Gly	p.D80G	ENST00000251849	NM_002880.3	80	gAc/gGc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144568	55144568	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	126	373	0	ENST00000257290.5:c.2042A>T	p.Asp681Val	p.D681V	ENST00000257290	NM_006206.4	681	gAt/gTt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131973803	131973803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	105	318	0	ENST00000265335.6:c.3506C>T	p.Ala1169Val	p.A1169V	ENST00000265335		1169	gCc/gTc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526294	31526294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	154	499	0	ENST00000344624.3:c.746G>A	p.Arg249Gln	p.R249Q	ENST00000344624		249	cGg/cAg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797269	32797271	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	185	430	0	ENST00000374899.4:c.1838_1840del	p.Gln613del	p.Q613del	ENST00000374899	NM_018833.2	613	cAACgt/cgt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873869	151873869	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	167	432	0	ENST00000262189.6:c.8669G>T	p.Ser2890Ile	p.S2890I	ENST00000262189	NM_170606.2	2890	aGt/aTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152008933	152008933	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	120	336	0	ENST00000262189.6:c.689T>A	p.Leu230Gln	p.L230Q	ENST00000262189	NM_170606.2	230	cTg/cAg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467711	50467711	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	122	417	0	ENST00000331340.3:c.946A>G	p.Asn316Asp	p.N316D	ENST00000331340	NM_006060.4	316	Aac/Gac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273212	55273212	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	75	483	0	ENST00000275493.2:c.3535A>G	p.Lys1179Glu	p.K1179E	ENST00000275493	NM_005228.3	1179	Aag/Gag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738122	145738122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			801	192	524	0	ENST00000428558.2:c.2788C>T	p.His930Tyr	p.H930Y	ENST00000428558	NM_004260.3	930	Cac/Tac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913251	39913251	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0088681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	193	268	0	ENST00000378444.4:c.4864G>T	p.Gly1622Ter	p.G1622*	ENST00000378444	NM_001123385.1	1622	Gga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0088682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	157	602	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0088682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			888	154	540	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710585	114710585	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0088682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	179	518	0	ENST00000543371.1:c.70G>T	p.Glu24Ter	p.E24*	ENST00000543371	NM_001198531.1	24	Gag/Tag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057755	180057755	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757054474		P-0088682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	116	516	1	ENST00000261937.6:c.200C>T	p.Ala67Val	p.A67V	ENST00000261937	NM_182925.4	67	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175471	112175474	+	frameshift_variant	Frame_Shift_Del	DEL	GATA	GATA	-			P-0088682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	180	491	0	ENST00000257430.4:c.4181_4184del	p.Asp1394ValfsTer20	p.D1394Vfs*20	ENST00000257430	NM_000038.5	1394	GATAgt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0088687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	41	404	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0088687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	80	418	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0088687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	29	460	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884908	134884908	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202034365		P-0088687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	18	362	0	ENST00000398015.3:c.1684G>A	p.Val562Ile	p.V562I	ENST00000398015	NM_004441.4	562	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112174384	112174384	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0088687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	16	444	0	ENST00000257430.4:c.3093T>A	p.Tyr1031Ter	p.Y1031*	ENST00000257430	NM_000038.5	1031	taT/taA																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119790	70119790	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0088687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	81	417	0	ENST00000245479.2:c.792del	p.Arg264SerfsTer15	p.R264Sfs*15	ENST00000245479	NM_000346.3	264	agA/ag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69050744	69050744	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	17	264	0	ENST00000288368.4:c.4079T>C	p.Leu1360Pro	p.L1360P	ENST00000288368	NM_024870.2	1360	cTg/cCg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374914	45374914	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	77	437	0	ENST00000262160.6:c.929G>T	p.Arg310Met	p.R310M	ENST00000262160	NM_005901.5	310	aGg/aTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974696	21974697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0088688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	65	487	0	ENST00000304494.5:c.130dup	p.Tyr44LeufsTer76	p.Y44Lfs*76	ENST00000304494	NM_000077.4	44	tac/tTac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492917	56492917	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0088688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	73	442	0	ENST00000407977.2:c.22C>T	p.Gln8Ter	p.Q8*	ENST00000407977		8	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0088688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	42	282	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28931795	28931795	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780795250		P-0088688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	74	441	2	ENST00000282397.4:c.2144C>T	p.Thr715Met	p.T715M	ENST00000282397	NM_002019.4	715	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578476	7578546	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCA	GGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCA	-			P-0088688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	58	546	0	ENST00000269305.4:c.384_454del	p.Leu130ArgfsTer27	p.L130Rfs*27	ENST00000269305	NM_001126112.2	128	ccTGCCCTCAACAAGATGTTTTGCCAACTGGCCAAGACCTGCCCTGTGCAGCTGTGGGTTGATTCCACACCCCcg/cccg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573644	48573647	+	frameshift_variant	Frame_Shift_Del	DEL	AACA	AACA	-			P-0088688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	74	457	0	ENST00000342988.3:c.228_231del	p.Arg76SerfsTer17	p.R76Sfs*17	ENST00000342988	NM_005359.5	76	agAACA/ag																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589616	67589618	+	inframe_deletion	In_Frame_Del	DEL	GTC	GTC	-			P-0088691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	256	310	0	ENST00000274335.5:c.1380_1382del	p.Ser460del	p.S460del	ENST00000274335		460	aGTCga/aga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152044	11152044	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886054155		P-0088691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	309	493	0	ENST00000344626.4:c.4232G>A	p.Arg1411Gln	p.R1411Q	ENST00000344626	NM_003072.3	1411	cGg/cAg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177695	56177695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	302	636	0	ENST00000399503.3:c.2670del	p.Asn891ThrfsTer18	p.N891Tfs*18	ENST00000399503	NM_005921.1	890	Ccc/cc																																																																															
MET	4233	MSKCC	GRCh37	7	116403236	116403236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	265	440	0	ENST00000397752.3:c.2497C>T	p.Leu833Phe	p.L833F	ENST00000397752	NM_000245.2	833	Ctc/Ttc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575365	64575365	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs794728620		P-0088691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	369	655	0	ENST00000337652.1:c.667C>T	p.Arg223Trp	p.R223W	ENST00000337652	NM_130803.2	223	Cgg/Tgg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041861	14041861	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088692-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	44	577	0	ENST00000311895.7:c.2408G>T	p.Cys803Phe	p.C803F	ENST00000311895	NM_005236.2	803	tGc/tTc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190735	11190735	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1338775745		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	311	371	0	ENST00000361445.4:c.5464G>A	p.Gly1822Arg	p.G1822R	ENST00000361445	NM_004958.3	1822	Ggg/Agg																																																																															
JUN	3725	MSKCC	GRCh37	1	59248126	59248126	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs763958620		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	256	393	4	ENST00000371222.2:c.617A>C	p.Gln206Pro	p.Q206P	ENST00000371222	NM_002228.3	206	cAg/cCg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163309204	163309204	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	45	201	0	ENST00000271452.3:c.543G>T	p.Lys181Asn	p.K181N	ENST00000271452	NM_145697.2	181	aaG/aaT																																																																															
TET1	80312	MSKCC	GRCh37	10	70404833	70404833	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376078561		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	100	193	0	ENST00000373644.4:c.2347G>A	p.Gly783Ser	p.G783S	ENST00000373644	NM_030625.2	783	Ggc/Agc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	414	250	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123246892	123246892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	199	222	0	ENST00000358487.5:c.2033G>A	p.Arg678Lys	p.R678K	ENST00000358487	NM_000141.4	678	aGa/aAa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939260	71939260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	95	409	1	ENST00000298229.2:c.209G>A	p.Arg70His	p.R70H	ENST00000298229	NM_001567.3	70	cGc/cAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	56	451	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307301	118307301	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	51	134	0	ENST00000534358.1:c.77del	p.Gly26AlafsTer2	p.G26Afs*2	ENST00000534358	NM_005933.3	25	cGg/cg																																																																															
CBL	867	MSKCC	GRCh37	11	119168126	119168126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	117	201	0	ENST00000264033.4:c.2186G>A	p.Cys729Tyr	p.C729Y	ENST00000264033	NM_005188.3	729	tGt/tAt																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	161	172	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	406317	406318	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	208	240	0	ENST00000399788.2:c.4123dup	p.Cys1375LeufsTer2	p.C1375Lfs*2	ENST00000399788	NM_001042603.1	1375	tgt/tTgt																																																																															
CCND2	894	MSKCC	GRCh37	12	4398148	4398148	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	73	223	0	ENST00000261254.3:c.712A>G	p.Thr238Ala	p.T238A	ENST00000261254	NM_001759.3	238	Aca/Gca																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123836	46123837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	141	282	0	ENST00000334344.6:c.109dup	p.Ile37AsnfsTer29	p.I37Nfs*29	ENST00000334344	NM_152641.2	34	-/A																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426444	49426444	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	226	405	0	ENST00000301067.7:c.12044T>C	p.Leu4015Pro	p.L4015P	ENST00000301067	NM_003482.3	4015	cTg/cCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	209	355	0	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481857	56481857	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519817		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	287	296	0	ENST00000267101.3:c.785C>A	p.Pro262His	p.P262H	ENST00000267101	NM_001982.3	262	cCt/cAt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56491680	56491682	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-	rs769041526		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	177	254	0	ENST00000267101.3:c.2576_2578del	p.Leu859del	p.L859del	ENST00000267101	NM_001982.3	858	CTG/-																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562750	21562750	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1157842597		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	241	377	1	ENST00000382592.4:c.1169C>T	p.Pro390Leu	p.P390L	ENST00000382592	NM_014572.2	390	cCg/cTg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133898	41133898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	238	333	0	ENST00000379561.5:c.1730del	p.Gly577AlafsTer5	p.G577Afs*5	ENST00000379561	NM_002015.3	577	gGc/gc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609331	81609331	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139286618		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	199	229	0	ENST00000298171.2:c.929G>A	p.Arg310His	p.R310H	ENST00000298171	NM_000369.2	310	cGc/cAc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95572555	95572555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	130	162	0	ENST00000343455.3:c.2810G>A	p.Arg937His	p.R937H	ENST00000343455	NM_177438.2	937	cGc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	41961399	41961399	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748756129		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	60	272	0	ENST00000219905.7:c.307C>T	p.Arg103Cys	p.R103C	ENST00000219905	NM_001164273.1	103	Cgc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42054516	42054516	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	106	219	0	ENST00000219905.7:c.7704del	p.Lys2569AsnfsTer3	p.K2569Nfs*3	ENST00000219905	NM_001164273.1	2567	aGg/ag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43739593	43739593	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1298106514		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	184	183	0	ENST00000382044.4:c.2807T>C	p.Leu936Ser	p.L936S	ENST00000382044	NM_001141980.1	936	tTg/tCg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	229	289	0	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																															
CD276	80381	MSKCC	GRCh37	15	73994652	73994652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	283	405	0	ENST00000318443.5:c.136G>A	p.Ala46Thr	p.A46T	ENST00000318443	NM_001024736.1	46	Gcc/Acc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354374	354374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	168	221	0	ENST00000262320.3:c.1184G>A	p.Arg395His	p.R395H	ENST00000262320	NM_003502.3	395	cGc/cAc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3656556	3656556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147872182		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	333	316	0	ENST00000294008.3:c.679G>A	p.Ala227Thr	p.A227T	ENST00000294008	NM_032444.2	227	Gct/Act																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781866	3781866	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			749	91	321	0	ENST00000262367.5:c.4801A>C	p.Ser1601Arg	p.S1601R	ENST00000262367	NM_004380.2	1601	Agc/Cgc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3790470	3790470	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774076896		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	174	238	0	ENST00000262367.5:c.4063G>A	p.Gly1355Arg	p.G1355R	ENST00000262367	NM_004380.2	1355	Ggg/Agg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23614858	23614858	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	200	209	0	ENST00000261584.4:c.3483del	p.Phe1161LeufsTer2	p.F1161Lfs*2	ENST00000261584	NM_024675.3	1161	ttT/tt																																																																															
NUP93	9688	MSKCC	GRCh37	16	56878430	56878430	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771046738		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	95	269	1	ENST00000308159.5:c.2369G>A	p.Arg790His	p.R790H	ENST00000308159	NM_014669.4	790	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991586	72991586	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768340392		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	288	357	0	ENST00000268489.5:c.2459G>A	p.Arg820His	p.R820H	ENST00000268489	NM_006885.3	820	cGc/cAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346961	89346961	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775491352		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	254	384	0	ENST00000301030.4:c.5989G>A	p.Ala1997Thr	p.A1997T	ENST00000301030	NM_001256183.1	1997	Gcg/Acg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89880998	89880998	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	64	176	0	ENST00000389301.3:c.213del	p.Lys71AsnfsTer7	p.K71Nfs*7	ENST00000389301	NM_000135.2	71	aaA/aa																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679886	33679886	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746690453		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	262	288	0	ENST00000308377.4:c.2195G>A	p.Arg732His	p.R732H	ENST00000308377	NM_152270.3	732	cGc/cAc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657676	37657677	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	116	200	0	ENST00000447079.4:c.2597dup	p.Leu866PhefsTer4	p.L866Ffs*4	ENST00000447079	NM_015083.1	865	att/aTtt																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370236	40370236	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764965457		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	170	355	4	ENST00000293328.3:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000293328	NM_012448.3	368	Cag/ag																																																																															
EZH1	2145	MSKCC	GRCh37	17	40865379	40865379	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	100	242	0	ENST00000428826.2:c.1052A>G	p.His351Arg	p.H351R	ENST00000428826		351	cAc/cGc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	163	313	1	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63537617	63537617	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060502160		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	205	209	0	ENST00000307078.5:c.1015C>T	p.Arg339Cys	p.R339C	ENST00000307078	NM_004655.3	339	Cgc/Tgc																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66526526	66526526	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	193	289	0	ENST00000358598.2:c.1082C>A	p.Pro361Gln	p.P361Q	ENST00000358598	NM_212471.2	361	cCa/cAa																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732442	74732447	+	inframe_deletion	In_Frame_Del	DEL	CGAGAA	CGAGAA	-			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	175	359	0	ENST00000359995.5:c.462_467del	p.Arg158_Ser159del	p.R158_S159del	ENST00000359995	NM_001195427.1	154	cgTTCTCGa/cga																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39609313	39609313	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760479037		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	130	179	0	ENST00000262039.4:c.1615C>T	p.Arg539Cys	p.R539C	ENST00000262039	NM_002647.2	539	Cgt/Tgt																																																																															
INSR	3643	MSKCC	GRCh37	19	7142932	7142932	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs371294434		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	270	346	1	ENST00000302850.5:c.2437C>T	p.Arg813Ter	p.R813*	ENST00000302850	NM_000208.2	813	Cga/Tga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311605	15311605	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1445073298		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	286	533	4	ENST00000263388.2:c.112del	p.Ala38LeufsTer198	p.A38Lfs*198	ENST00000263388	NM_000435.2	38	Gct/ct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214398	36214398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs868041281		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	237	287	0	ENST00000222270.7:c.3057del	p.Gly1020AlafsTer4	p.G1020Afs*4	ENST00000222270	NM_014727.1	1018	Aaa/aa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224568	36224568	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755245377		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	180	385	0	ENST00000222270.7:c.7030G>A	p.Ala2344Thr	p.A2344T	ENST00000222270	NM_014727.1	2344	Gct/Act																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227816	36227816	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1190286476		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	310	404	0	ENST00000222270.7:c.7301C>T	p.Ala2434Val	p.A2434V	ENST00000222270	NM_014727.1	2434	gCg/gTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42795269	42795269	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs34000070		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	69	365	0	ENST00000575354.2:c.2353del	p.Ala785ProfsTer139	p.A785Pfs*139	ENST00000575354	NM_015125.3	783	caG/ca																																																																															
SOS1	6654	MSKCC	GRCh37	2	39241025	39241025	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	40	156	0	ENST00000402219.2:c.2046A>G	p.Ile682Met	p.I682M	ENST00000402219	NM_005633.3	682	atA/atG																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47612329	47612329	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	69	137	0	ENST00000263735.4:c.883G>T	p.Ala295Ser	p.A295S	ENST00000263735	NM_002354.2	295	Gca/Tca																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	68	309	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719061	190719061	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141084536		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	58	179	0	ENST00000441310.2:c.1063G>A	p.Ala355Thr	p.A355T	ENST00000441310	NM_000534.4	355	Gca/Aca																																																																															
CASP8	841	MSKCC	GRCh37	2	202150022	202150022	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			706	80	331	0	ENST00000358485.4:c.1463T>C	p.Leu488Pro	p.L488P	ENST00000358485	NM_001080125.1	488	cTg/cCg																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735313	204735313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	86	284	0	ENST00000302823.3:c.114G>A	p.Met38Ile	p.M38I	ENST00000302823	NM_005214.4	38	atG/atA																																																																															
BARD1	580	MSKCC	GRCh37	2	215645975	215645975	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	55	287	0	ENST00000260947.4:c.623del	p.Lys208ArgfsTer4	p.K208Rfs*4	ENST00000260947	NM_000465.2	208	aAg/ag																																																																															
INHA	3623	MSKCC	GRCh37	2	220440169	220440169	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777288649		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	231	315	0	ENST00000243786.2:c.1022G>A	p.Arg341His	p.R341H	ENST00000243786	NM_002191.3	341	cGc/cAc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	78	357	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	200	366	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485415	57485415	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755974022		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	255	273	1	ENST00000371085.3:c.997C>T	p.Arg333Cys	p.R333C	ENST00000371085	NM_000516.4	333	Cgc/Tgc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62303918	62303918	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs1023502136		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	201	270	0	ENST00000482936.1:c.709G>A	p.Ala237Thr	p.A237T	ENST00000482936		237	Gca/Aca																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21347168	21347168	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	246	311	0	ENST00000215739.8:c.1235G>T	p.Arg412Leu	p.R412L	ENST00000215739	NM_006767.3	412	cGc/cTc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445208	29445209	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	298	333	0	ENST00000544604.2:c.1046_1047del	p.Val349GlyfsTer117	p.V349Gfs*117	ENST00000544604	NM_001206998.1	347	GTg/g																																																																															
RAC2	5880	MSKCC	GRCh37	22	37628864	37628864	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151307781		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	205	271	0	ENST00000249071.6:c.202C>T	p.Arg68Trp	p.R68W	ENST00000249071	NM_002872.4	68	Cgg/Tgg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	364	247	11	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
MLH1	4292	MSKCC	GRCh37	3	37042546	37042546	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	245	144	0	ENST00000231790.2:c.306+2T>C		p.X102_splice	ENST00000231790	NM_000249.3	102																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52582161	52582161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	356	338	0	ENST00000394830.3:c.4667C>T	p.Ala1556Val	p.A1556V	ENST00000394830	NM_018313.4	1556	gCa/gTa																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	271	389	1	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204623	128204623	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	109	338	0	ENST00000341105.2:c.818del	p.Gly273AspfsTer53	p.G273Dfs*53	ENST00000341105	NM_032638.4	273	gGa/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916648	178916648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	79	211	0	ENST00000263967.3:c.35G>A	p.Gly12Asp	p.G12D	ENST00000263967	NM_006218.2	12	gGc/gAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	85	99	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356200	66356200	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770587480		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	189	309	0	ENST00000273854.3:c.1297G>A	p.Ala433Thr	p.A433T	ENST00000273854	NM_004439.5	433	Gct/Act																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509922	187509922	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372186380		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	155	358	0	ENST00000441802.2:c.13591G>A	p.Ala4531Thr	p.A4531T	ENST00000441802	NM_005245.3	4531	Gct/Act																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630783	187630783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	262	302	0	ENST00000441802.2:c.199G>A	p.Ala67Thr	p.A67T	ENST00000441802	NM_005245.3	67	Gcg/Acg																																																																															
TERT	7015	MSKCC	GRCh37	5	1260644	1260644	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	207	376	0	ENST00000310581.5:c.2915G>T	p.Arg972Leu	p.R972L	ENST00000310581	NM_198253.2	972	cGc/cTc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873630	35873631	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	39	241	0	ENST00000303115.3:c.588dup	p.Pro197ThrfsTer6	p.P197Tfs*6	ENST00000303115	NM_002185.3	196	caa/cAaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111414	56111414	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	186	313	1	ENST00000399503.3:c.14C>G	p.Ala5Gly	p.A5G	ENST00000399503	NM_005921.1	5	gCg/gGg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	61	187	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86627198	86627200	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	231	223	0	ENST00000274376.6:c.577_579del	p.Glu193del	p.E193del	ENST00000274376	NM_002890.2	191	gcAGAa/gca																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	267	277	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	161	244	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																															
RAD50	10111	MSKCC	GRCh37	5	131923763	131923763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	37	177	0	ENST00000265335.6:c.1033G>A	p.Glu345Lys	p.E345K	ENST00000265335		345	Gaa/Aaa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131977953	131977953	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375710541		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	145	185	0	ENST00000265335.6:c.3836G>A	p.Arg1279His	p.R1279H	ENST00000265335		1279	cGt/cAt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459680	149459680	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	212	344	0	ENST00000286301.3:c.527A>G	p.Gln176Arg	p.Q176R	ENST00000286301	NM_005211.3	176	cAa/cGa																																																																															
NPM1	4869	MSKCC	GRCh37	5	170827157	170827159	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TGA	TGA	-	rs779471362		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	101	144	0	ENST00000296930.5:c.538_540del	p.Asp180del	p.D180del	ENST00000296930	NM_002520.6	175	gaTGAt/gat																																																																															
FLT4	2324	MSKCC	GRCh37	5	180045918	180045920	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTC	CTC	-	rs746341092		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	203	342	0	ENST00000261937.6:c.2851_2853del	p.Glu951del	p.E951del	ENST00000261937	NM_182925.4	951	GAG/-																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31322261	31322262	+	frameshift_variant,stop_lost	Frame_Shift_Ins	INS	-	-	A			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	36	145	0	ENST00000412585.2:c.1087dup	p.Ter363LeufsTer37	p.*363Lfs*37	ENST00000412585	NM_005514.6	363	tga/tTga																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323288	31323288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	43	119	0	ENST00000412585.2:c.701C>A	p.Pro234His	p.P234H	ENST00000412585	NM_005514.6	234	cCt/cAt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117622135	117622135	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	72	176	0	ENST00000368508.3:c.6733+2T>C		p.X2245_splice	ENST00000368508	NM_002944.2	2245																																																																																
ROS1	6098	MSKCC	GRCh37	6	117674204	117674204	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	69	252	0	ENST00000368508.3:c.4270C>A	p.Leu1424Ile	p.L1424I	ENST00000368508	NM_002944.2	1424	Cta/Ata																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519505	137519506	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs780346130		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	165	274	5	ENST00000367739.4:c.1132_1133del	p.Ser378PhefsTer6	p.S378Ffs*6	ENST00000367739	NM_000416.2	378	AGt/t																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137528164	137528164	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs538147969		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	143	172	0	ENST00000367739.4:c.136G>A	p.Val46Ile	p.V46I	ENST00000367739	NM_000416.2	46	Gta/Ata																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129396	152129396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	230	332	0	ENST00000206249.3:c.349C>A	p.Leu117Met	p.L117M	ENST00000206249	NM_000125.3	117	Ctg/Atg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739873	41739873	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1261664857		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	260	264	0	ENST00000242208.4:c.100G>A	p.Asp34Asn	p.D34N	ENST00000242208	NM_002192.2	34	Gac/Aac																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444246	50444246	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	223	274	0	ENST00000331340.3:c.176T>C	p.Val59Ala	p.V59A	ENST00000331340	NM_006060.4	59	gTa/gCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240738	55240738	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	171	369	0	ENST00000275493.2:c.1982C>T	p.Ala661Val	p.A661V	ENST00000275493	NM_005228.3	661	gCc/gTc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	160	452	7	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
RAD21	5885	MSKCC	GRCh37	8	117862878	117862878	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	24	114	0	ENST00000297338.2:c.1599del	p.Glu534LysfsTer78	p.E534Kfs*78	ENST00000297338	NM_006265.2	533	aaA/aa																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2039776	2039777	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAG	rs745316697		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	170	377	0	ENST00000349721.2:c.705_707dup	p.Gln238dup	p.Q238dup	ENST00000349721	NM_003070.3	238	-/CAG																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8331715	8331715	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	91	240	0	ENST00000356435.5:c.5401A>G	p.Arg1801Gly	p.R1801G	ENST00000356435		1801	Agg/Ggg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389269	8389269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	55	204	0	ENST00000356435.5:c.4349C>T	p.Thr1450Ile	p.T1450I	ENST00000356435		1450	aCa/aTa																																																																															
TEK	7010	MSKCC	GRCh37	9	27172734	27172734	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774928388		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	217	214	0	ENST00000380036.4:c.749C>T	p.Thr250Met	p.T250M	ENST00000380036	NM_000459.3	250	aCg/aTg																																																																															
TEK	7010	MSKCC	GRCh37	9	27185545	27185545	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			727	82	275	0	ENST00000380036.4:c.1250del	p.Pro417LeufsTer10	p.P417Lfs*10	ENST00000380036	NM_000459.3	415	ctC/ct																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321297	1321297	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370445430		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	250	305	0	ENST00000381566.1:c.458G>A	p.Arg153Gln	p.R153Q	ENST00000381566		153	cGg/cAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	262	210	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																															
ATRX	546	MSKCC	GRCh37	X	76891544	76891544	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			59	111	81	0	ENST00000373344.5:c.4561A>T	p.Ile1521Leu	p.I1521L	ENST00000373344	NM_000489.3	1521	Ata/Tta																																																																															
BTK	695	MSKCC	GRCh37	X	100629548	100629549	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs886041148		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	85	113	0	ENST00000308731.7:c.215dup	p.Asn72LysfsTer13	p.N72Kfs*13	ENST00000308731	NM_000061.2	72	aat/aaAt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123215311	123215311	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			58	101	62	0	ENST00000218089.9:c.2857C>T	p.Arg953Ter	p.R953*	ENST00000218089	NM_001042749.1	953	Cga/Tga																																																																															
MST1	4485	MSKCC	GRCh37	3	49724809	49724809	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1243595850		P-0064724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	13	183	0	ENST00000449682.2:c.458C>T	p.Pro153Leu	p.P153L	ENST00000449682	NM_020998.3	153	cCa/cTa																																																																															
MGA	23269	MSKCC	GRCh37	15	42052636	42052636	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1054243525		P-0086989-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			568	205	597	0	ENST00000219905.7:c.7307G>A	p.Arg2436His	p.R2436H	ENST00000219905	NM_001164273.1	2436	cGt/cAt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696638	47696638	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0086989-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			497	187	510	0	ENST00000347630.2:c.310T>G	p.Phe104Val	p.F104V	ENST00000347630	NM_001007230.1	104	Ttc/Gtc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164623	47164624	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0086989-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			485	157	539	0	ENST00000409792.3:c.1502dup	p.Tyr501Ter	p.Y501*	ENST00000409792	NM_014159.6	501	tac/taAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67593425	67593425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086989-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	182	514	0	ENST00000274335.5:c.2171G>A	p.Arg724Gln	p.R724Q	ENST00000274335		724	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0087666-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	31	451	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs587782289		P-0087666-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			606	39	469	0	ENST00000269305.4:c.706T>G	p.Tyr236Asp	p.Y236D	ENST00000269305	NM_001126112.2	236	Tac/Gac																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575040	64575040	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0088020-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			316	83	489	0	ENST00000337652.1:c.782T>G	p.Leu261Arg	p.L261R	ENST00000337652	NM_130803.2	261	cTt/cGt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114917783	114917785	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs773947352		P-0088570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	111	355	2	ENST00000543371.1:c.1283_1285del	p.Lys428del	p.K428del	ENST00000543371	NM_001198531.1	425	AAG/-																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435061	18435061	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0088570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	166	531	0	ENST00000266497.5:c.46G>T	p.Glu16Ter	p.E16*	ENST00000266497		16	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0088570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	125	396	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789597	3789597	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	175	455	0	ENST00000262367.5:c.4262G>T	p.Cys1421Phe	p.C1421F	ENST00000262367	NM_004380.2	1421	tGc/tTc																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544996	86544996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	27	385	0	ENST00000262426.4:c.821C>T	p.Ala274Val	p.A274V	ENST00000262426	NM_001451.2	274	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750600586		P-0088570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	16	518	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0088570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	34	431	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0088570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	24	437	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0088570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	22	466	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs137854575		P-0088570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	148	566	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0088570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	226	575	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
CTR9	9646	MSKCC	GRCh37	11	10800441	10800441	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	186	454	0	ENST00000361367.2:c.3311A>G	p.Asn1104Ser	p.N1104S	ENST00000361367	NM_014633.3	1104	aAt/aGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060793	38060793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	148	595	0	ENST00000250448.2:c.1196C>T	p.Pro399Leu	p.P399L	ENST00000250448	NM_004496.3	399	cCg/cTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264066389		P-0088573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	12	363	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579433	7579433	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1064793279		P-0088573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	98	609	0	ENST00000269305.4:c.254del	p.Pro85LeufsTer38	p.P85Lfs*38	ENST00000269305	NM_001126112.2	85	cCt/ct																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599948	10599948	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs111830952		P-0088573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	93	529	0	ENST00000171111.5:c.1628C>T	p.Thr543Met	p.T543M	ENST00000171111	NM_203500.1	543	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0088573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	83	347	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112176036	112176042	+	frameshift_variant	Frame_Shift_Del	DEL	CCATGCC	CCATGCC	-			P-0088573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	135	548	0	ENST00000257430.4:c.4745_4751del	p.Ala1582GlufsTer66	p.A1582Efs*66	ENST00000257430	NM_000038.5	1582	gCCATGCCa/ga																																																																															
APC	324	MSKCC	GRCh37	5	112173880	112173880	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0088573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	91	503	0	ENST00000257430.4:c.2589C>A	p.Tyr863Ter	p.Y863*	ENST00000257430	NM_000038.5	863	taC/taA																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2185861	2185861	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0088573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	152	435	0	ENST00000398665.3:c.133T>A	p.Cys45Ser	p.C45S	ENST00000398665	NM_032482.2	45	Tgt/Agt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250871	153250872	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	ACTA			P-0088573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	26	391	0	ENST00000281708.4:c.1185_1188dup	p.Gly397Ter	p.G397*	ENST00000281708	NM_033632.3	396	-/TAGT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0088575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	43	486	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115745	8115745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	48	426	0	ENST00000346208.3:c.1091G>A	p.Arg364Lys	p.R364K	ENST00000346208		364	aGa/aAa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64571996	64571996	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	46	469	0	ENST00000337652.1:c.1658del	p.Gly553ValfsTer11	p.G553Vfs*11	ENST00000337652	NM_130803.2	553	gGt/gt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71096235	71096236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0088575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	32	407	0	ENST00000318789.4:c.521dup	p.Ala175GlyfsTer120	p.A175Gfs*120	ENST00000318789	NM_032682.5	174	gtg/gtTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0088577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	96	514	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40864480	40864480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	51	463	0	ENST00000428826.2:c.1228C>T	p.Pro410Ser	p.P410S	ENST00000428826		410	Ccc/Tcc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138407809	138407809	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	55	362	0	ENST00000289153.2:c.2044G>T	p.Val682Leu	p.V682L	ENST00000289153	NM_006219.2	682	Gtg/Ttg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446482	49446487	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGTG	GGGGTG	C			P-0088577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	68	467	0	ENST00000301067.7:c.1118_1123delinsG	p.Ser373CysfsTer9	p.S373Cfs*9	ENST00000301067	NM_003482.3	373	tCACCCCca/tGca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0088578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	217	352	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0088578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	85	297	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591889	48591889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	99	448	0	ENST00000342988.3:c.1052A>G	p.Asp351Gly	p.D351G	ENST00000342988	NM_005359.5	351	gAt/gGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420213	49420213	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267607237		P-0088578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	213	443	0	ENST00000301067.7:c.15536G>A	p.Arg5179His	p.R5179H	ENST00000301067	NM_003482.3	5179	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0088578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	22	318	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22008829	22008829	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0088578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	66	320	0	ENST00000276925.6:c.124G>C	p.Gly42Arg	p.G42R	ENST00000276925	NM_004936.3	42	Gga/Cga																																																																															
APC	324	MSKCC	GRCh37	5	112175532	112175533	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAGTG			P-0088578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	75	416	0	ENST00000257430.4:c.4242_4246dup	p.Gly1416GlufsTer5	p.G1416Efs*5	ENST00000257430	NM_000038.5	1414	gta/gtAAGTGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0088583-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	194	426	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0088583-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	779	238	3	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48556992	48556996	+	splice_donor_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	AGGTA	AGGTA	-			P-0088583-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	98	279	0	ENST00000342988.3:c.-128_-128+4del		p.X43_splice	ENST00000342988	NM_005359.5	43																																																																																
RNF43	54894	MSKCC	GRCh37	17	56436118	56436119	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0088583-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	266	494	0	ENST00000407977.2:c.1018dup	p.His340ProfsTer103	p.H340Pfs*103	ENST00000407977		340	cac/cCac																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	139	497	0	ENST00000269305.4:c.949del	p.Gln317SerfsTer28	p.Q317Sfs*28	ENST00000269305	NM_001126112.2	317	Cag/ag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034471	47034471	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0088584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	250	169	0	ENST00000329236.7:c.325C>T	p.Arg109Ter	p.R109*	ENST00000329236	NM_001204466.1	109	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174437	112174437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs876658667		P-0088584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	93	398	0	ENST00000257430.4:c.3146G>A	p.Trp1049Ter	p.W1049*	ENST00000257430	NM_000038.5	1049	tGg/tAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275279	41275279	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	119	475	0	ENST00000349496.5:c.1445A>G	p.Gln482Arg	p.Q482R	ENST00000349496	NM_001904.3	482	cAg/cGg																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67632074	67632075	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0088584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	42	420	0	ENST00000272342.5:c.2261dup	p.Tyr754Ter	p.Y754*	ENST00000272342	NM_019002.3	754	tat/tAat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106988	27106989	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0088584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	228	532	0	ENST00000324856.7:c.6601dup	p.Asp2201GlyfsTer24	p.D2201Gfs*24	ENST00000324856	NM_006015.4	2200	gag/gaGg																																																																															
MED12	9968	MSKCC	GRCh37	X	70361210	70361210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	40	230	0	ENST00000374080.3:c.6398C>A	p.Ser2133Tyr	p.S2133Y	ENST00000374080		2133	tCc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0088585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	234	459	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0088585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	94	357	1	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
AR	367	MSKCC	GRCh37	X	66766412	66766412	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200390780		P-0088585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	36	213	0	ENST00000374690.3:c.1424C>T	p.Ala475Val	p.A475V	ENST00000374690	NM_000044.3	475	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112157650	112157650	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0088585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	27	205	0	ENST00000257430.4:c.1370C>A	p.Ser457Ter	p.S457*	ENST00000257430	NM_000038.5	457	tCa/tAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0088585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			67	23	251	0	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430515	181430515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	89	400	0	ENST00000325404.1:c.367G>A	p.Asp123Asn	p.D123N	ENST00000325404	NM_003106.3	123	Gat/Aat																																																																															
TP63	8626	MSKCC	GRCh37	3	189586505	189586505	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs576449010		P-0088585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	63	367	0	ENST00000264731.3:c.1129C>T	p.Pro377Ser	p.P377S	ENST00000264731	NM_003722.4	377	Ccg/Tcg																																																																															
EP300	2033	MSKCC	GRCh37	22	41574219	41574219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	98	413	0	ENST00000263253.7:c.6504G>T	p.Met2168Ile	p.M2168I	ENST00000263253	NM_001429.3	2168	atG/atT																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115266560	115266560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	36	327	0	ENST00000438362.2:c.1955G>A	p.Arg652Lys	p.R652K	ENST00000438362	NM_001242891.1	652	aGg/aAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0088585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	61	228	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291118	10291118	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149362098		P-0088585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	422	612	0	ENST00000340748.4:c.353G>A	p.Arg118His	p.R118H	ENST00000340748		118	cGt/cAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42791572	42791573	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0088585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	76	430	0	ENST00000575354.2:c.554_555del	p.Ser185Ter	p.S185*	ENST00000575354	NM_015125.3	185	TCt/t																																																																															
APC	324	MSKCC	GRCh37	5	112154838	112154839	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0088585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	118	389	0	ENST00000257430.4:c.1112dup	p.Asn372LysfsTer6	p.N372Kfs*6	ENST00000257430	NM_000038.5	370	ttg/ttGg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552627	18552627	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	26	286	0	ENST00000266497.5:c.2038T>C	p.Tyr680His	p.Y680H	ENST00000266497		680	Tat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0088589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	72	351	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PARP1	142	MSKCC	GRCh37	1	226578119	226578119	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0088589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	69	310	0	ENST00000366794.5:c.609G>C	p.Lys203Asn	p.K203N	ENST00000366794	NM_001618.3	203	aaG/aaC																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281070	49281071	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0088589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	53	273	0	ENST00000282018.3:c.122dup	p.Ile43AsnfsTer26	p.I43Nfs*26	ENST00000282018	NM_020377.2	39	-/T																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289535	33289535	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0088589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	43	291	0	ENST00000374542.5:c.168G>C	p.Lys56Asn	p.K56N	ENST00000374542	NM_001141970.1	56	aaG/aaC																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150900234	150900234	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0088589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	33	315	0	ENST00000271640.5:c.44C>G	p.Ala15Gly	p.A15G	ENST00000271640	NM_001145415.1	15	gCt/gGt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438312	110438312	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0088589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	27	285	0	ENST00000375856.3:c.89G>C	p.Ser30Thr	p.S30T	ENST00000375856	NM_003749.2	30	aGc/aCc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65301806	65301806	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	23	278	0	ENST00000342505.4:c.3233G>T	p.Cys1078Phe	p.C1078F	ENST00000342505	NM_002227.2	1078	tGt/tTt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048844	180048844	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	85	384	0	ENST00000261937.6:c.1718C>A	p.Pro573Gln	p.P573Q	ENST00000261937	NM_182925.4	573	cCg/cAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399543	139399543	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0088589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	76	401	0	ENST00000277541.6:c.4600C>T	p.Gln1534Ter	p.Q1534*	ENST00000277541	NM_017617.3	1534	Cag/Tag																																																																															
TERT	7015	MSKCC	GRCh37	5	1293440	1293440	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	138	280	0	ENST00000310581.5:c.1561C>A	p.Arg521Ser	p.R521S	ENST00000310581	NM_198253.2	521	Cgc/Agc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371671	55371687	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGAGCGGCTGCGCGT	GCAGAGCGGCTGCGCGT	-			P-0088589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	30	381	0	ENST00000297316.4:c.365_381del	p.Glu122AlafsTer34	p.E122Afs*34	ENST00000297316	NM_022454.3	121	GCAGAGCGGCTGCGCGTg/g																																																																															
BRCA2	675	MSKCC	GRCh37	13	32903579	32903579	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0088589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	32	163	0	ENST00000380152.3:c.632-1G>A		p.X211_splice	ENST00000380152		211																																																																																
NEGR1	257194	MSKCC	GRCh37	1	72400855	72400855	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0088617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	34	419	0	ENST00000357731.5:c.316C>G	p.Gln106Glu	p.Q106E	ENST00000357731	NM_173808.2	106	Cag/Gag																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200859	67200859	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0088617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	66	637	0	ENST00000312629.5:c.847A>T	p.Arg283Trp	p.R283W	ENST00000312629	NM_003952.2	283	Agg/Tgg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0088621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	132	380	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0088621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	156	418	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0088621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	106	237	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710552	114710553	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0088621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	157	395	0	ENST00000543371.1:c.40_41dup	p.Asn15ProfsTer5	p.N15Pfs*5	ENST00000543371	NM_001198531.1	13	ggc/gGCgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0088623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	103	385	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44514651	44514651	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	183	487	0	ENST00000291552.4:c.505T>C	p.Cys169Arg	p.C169R	ENST00000291552	NM_006758.2	169	Tgc/Cgc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061192	38061192	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	11	548	0	ENST00000250448.2:c.797T>C	p.Phe266Ser	p.F266S	ENST00000250448	NM_004496.3	266	tTc/tCc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993548	72993548	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	20	612	0	ENST00000268489.5:c.497T>C	p.Leu166Pro	p.L166P	ENST00000268489	NM_006885.3	166	cTc/cCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	17	248	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	56	550	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			855	87	588	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103504513	103504513	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140917545		P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	33	410	0	ENST00000355739.4:c.134G>A	p.Arg45His	p.R45H	ENST00000355739	NM_000123.3	45	cGc/cAc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111854391		P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	56	484	0	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg																																																																															
YES1	7525	MSKCC	GRCh37	18	743308	743308	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	69	498	1	ENST00000314574.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000314574	NM_005433.3	278	Cga/Tga																																																																															
IRF4	3662	MSKCC	GRCh37	6	405027	405027	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs568315642		P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	55	454	0	ENST00000380956.4:c.1109C>T	p.Ala370Val	p.A370V	ENST00000380956	NM_001195286.1	370	gCg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	59	562	0	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																																																															
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			805	78	547	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																															
MGA	23269	MSKCC	GRCh37	15	42021428	42021428	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	56	561	0	ENST00000219905.7:c.3724C>T	p.Arg1242Ter	p.R1242*	ENST00000219905	NM_001164273.1	1242	Cga/Tga																																																																															
POLE	5426	MSKCC	GRCh37	12	133250213	133250213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	70	633	1	ENST00000320574.5:c.1307C>A	p.Pro436His	p.P436H	ENST00000320574	NM_006231.2	436	cCc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	56	510	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714742	52714742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	59	537	0	ENST00000322088.6:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000322088	NM_014225.5	167	cGa/cAa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028618	12028618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	56	454	0	ENST00000353533.5:c.821G>T	p.Arg274Ile	p.R274I	ENST00000353533	NM_003010.3	274	aGa/aTa																																																																															
PGR	5241	MSKCC	GRCh37	11	100962529	100962529	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767360879		P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	53	442	0	ENST00000325455.5:c.1868G>A	p.Arg623His	p.R623H	ENST00000325455	NM_001202474.3	623	cGc/cAc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907037	101907037	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	49	362	0	ENST00000374994.4:c.997G>T	p.Asp333Tyr	p.D333Y	ENST00000374994	NM_004612.2	333	Gat/Tat																																																																															
ROS1	6098	MSKCC	GRCh37	6	117687431	117687431	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	79	432	1	ENST00000368508.3:c.2620G>T	p.Glu874Ter	p.E874*	ENST00000368508	NM_002944.2	874	Gaa/Taa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86642542	86642542	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	23	271	0	ENST00000274376.6:c.1102+1G>A		p.X368_splice	ENST00000274376	NM_002890.2	368																																																																																
APC	324	MSKCC	GRCh37	5	112174349	112174349	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	54	548	0	ENST00000257430.4:c.3058G>T	p.Glu1020Ter	p.E1020*	ENST00000257430	NM_000038.5	1020	Gaa/Taa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73336276	73336276	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	34	304	0	ENST00000377767.4:c.2128-1G>T		p.X710_splice	ENST00000377767	NM_014953.3	710																																																																																
WHSC1	7468	MSKCC	GRCh37	4	1902676	1902676	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779422565		P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			909	85	698	0	ENST00000382895.3:c.295C>T	p.Arg99Cys	p.R99C	ENST00000382895	NM_133330.2	99	Cgt/Tgt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538990	187538990	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755244994		P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			863	65	643	0	ENST00000441802.2:c.8750G>A	p.Arg2917Gln	p.R2917Q	ENST00000441802	NM_005245.3	2917	cGa/cAa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135325	30135325	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	57	443	0	ENST00000331968.5:c.493G>T	p.Glu165Ter	p.E165*	ENST00000331968	NM_002742.2	165	Gaa/Taa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029183	14029183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			781	72	544	0	ENST00000311895.7:c.1394C>T	p.Ser465Phe	p.S465F	ENST00000311895	NM_005236.2	465	tCt/tTt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384996	31384996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1169940446		P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			724	46	500	0	ENST00000328111.2:c.1381C>T	p.Arg461Cys	p.R461C	ENST00000328111	NM_006892.3	461	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951951	178951951	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	44	505	0	ENST00000263967.3:c.3006C>A	p.Phe1002Leu	p.F1002L	ENST00000263967	NM_006218.2	1002	ttC/ttA																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81819628	81819628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			814	79	537	0	ENST00000359376.3:c.34G>A	p.Glu12Lys	p.E12K	ENST00000359376	NM_002661.3	12	Gaa/Aaa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609450	81609450	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374530434		P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			760	64	629	0	ENST00000298171.2:c.1048G>A	p.Ala350Thr	p.A350T	ENST00000298171	NM_000369.2	350	Gct/Act																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865440	57865440	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			927	73	759	1	ENST00000228682.2:c.2917A>C	p.Asn973His	p.N973H	ENST00000228682	NM_005269.2	973	Aat/Cat																																																																															
EZH2	2146	MSKCC	GRCh37	7	148508738	148508738	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	57	420	0	ENST00000320356.2:c.1926C>A	p.Phe642Leu	p.F642L	ENST00000320356	NM_004456.4	642	ttC/ttA																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3828135	3828135	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	52	419	0	ENST00000262367.5:c.1990G>T	p.Glu664Ter	p.E664*	ENST00000262367	NM_004380.2	664	Gaa/Taa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55131211	55131211	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	53	444	0	ENST00000257290.5:c.754G>T	p.Glu252Ter	p.E252*	ENST00000257290	NM_006206.4	252	Gaa/Taa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979305	93979305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	40	494	0	ENST00000369303.4:c.1523G>A	p.Gly508Glu	p.G508E	ENST00000369303	NM_004440.3	508	gGa/gAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	29	310	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221277	36221277	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1391848136		P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			916	81	744	0	ENST00000222270.7:c.5111G>A	p.Arg1704His	p.R1704H	ENST00000222270	NM_014727.1	1704	cGc/cAc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683680	162683680	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373593750		P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			807	61	506	0	ENST00000366898.1:c.289C>T	p.Arg97Trp	p.R97W	ENST00000366898	NM_004562.2	97	Cgg/Tgg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244626	46244626	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			979	99	687	0	ENST00000334344.6:c.2720C>A	p.Ser907Ter	p.S907*	ENST00000334344	NM_152641.2	907	tCa/tAa																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2115925	2115925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			816	62	515	0	ENST00000349721.2:c.3560C>T	p.Ala1187Val	p.A1187V	ENST00000349721	NM_003070.3	1187	gCc/gTc																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872781	136872781	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			915	75	719	0	ENST00000241393.3:c.717G>T	p.Lys239Asn	p.K239N	ENST00000241393	NM_003467.2	239	aaG/aaT																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913413	32913413	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	44	456	0	ENST00000380152.3:c.4921G>T	p.Glu1641Ter	p.E1641*	ENST00000380152		1641	Gaa/Taa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149441386	149441386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			889	68	642	0	ENST00000286301.3:c.1653G>T	p.Lys551Asn	p.K551N	ENST00000286301	NM_005211.3	551	aaG/aaT																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67632109	67632109	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	37	468	0	ENST00000272342.5:c.2295T>G	p.Ser765Arg	p.S765R	ENST00000272342	NM_019002.3	765	agT/agG																																																																															
FANCC	2176	MSKCC	GRCh37	9	97864009	97864009	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	62	434	0	ENST00000289081.3:c.1657G>T	p.Glu553Ter	p.E553*	ENST00000289081	NM_000136.2	553	Gag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911553	114911553	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	71	580	0	ENST00000543371.1:c.1071C>A	p.Phe357Leu	p.F357L	ENST00000543371	NM_001198531.1	357	ttC/ttA																																																																															
RAD50	10111	MSKCC	GRCh37	5	131930594	131930594	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	31	323	0	ENST00000265335.6:c.1827T>G	p.Asn609Lys	p.N609K	ENST00000265335		609	aaT/aaG																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230734	66230734	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	39	379	0	ENST00000273854.3:c.2236+1G>T		p.X746_splice	ENST00000273854	NM_004439.5	746																																																																																
CYP19A1	1588	MSKCC	GRCh37	15	51535063	51535063	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			788	56	567	0	ENST00000260433.2:c.47T>C	p.Ile16Thr	p.I16T	ENST00000260433		16	aTc/aCc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074086	8074086	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			788	82	622	0	ENST00000377482.5:c.573C>A	p.Phe191Leu	p.F191L	ENST00000377482	NM_018948.3	191	ttC/ttA																																																																															
ROS1	6098	MSKCC	GRCh37	6	117737440	117737440	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	43	297	0	ENST00000368508.3:c.209A>C	p.Lys70Thr	p.K70T	ENST00000368508	NM_002944.2	70	aAa/aCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540440	187540440	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			879	77	635	0	ENST00000441802.2:c.7300G>T	p.Asp2434Tyr	p.D2434Y	ENST00000441802	NM_005245.3	2434	Gat/Tat																																																																															
PREX2	80243	MSKCC	GRCh37	8	69009264	69009264	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	48	417	0	ENST00000288368.4:c.2381A>C	p.Lys794Thr	p.K794T	ENST00000288368	NM_024870.2	794	aAa/aCa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710635	117710635	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			855	67	628	0	ENST00000368508.3:c.1637T>C	p.Val546Ala	p.V546A	ENST00000368508	NM_002944.2	546	gTc/gCc																																																																															
GAB1	2549	MSKCC	GRCh37	4	144359520	144359520	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770936099		P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			822	62	647	0	ENST00000262994.4:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262994	NM_002039.3	321	cGa/cAa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620609	52620609	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			745	81	497	0	ENST00000394830.3:c.3144T>G	p.Ile1048Met	p.I1048M	ENST00000394830	NM_018313.4	1048	atT/atG																																																																															
BRCA2	675	MSKCC	GRCh37	13	32936708	32936708	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0088634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	41	466	0	ENST00000380152.3:c.7854T>G	p.Ile2618Met	p.I2618M	ENST00000380152		2618	atT/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0088636-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	365	708	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153271228	153271228	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs866145254		P-0088636-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	118	277	0	ENST00000281708.4:c.550G>T	p.Gly184Ter	p.G184*	ENST00000281708	NM_033632.3	184	Gga/Tga																																																																															
EP300	2033	MSKCC	GRCh37	22	41527439	41527439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088636-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	218	525	0	ENST00000263253.7:c.1330G>T	p.Gly444Trp	p.G444W	ENST00000263253	NM_001429.3	444	Ggg/Tgg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136261	64136386	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACGACCAGGTGATGGCTTCCGGCCAGGGGAGGGCGGAGAGAAAAGGGGCAGGCGGCGGGGCTTGGGGGCACTATGGGCGGGATCTAGGGGTGAATTGGGCGGGGCCTAGCGTTTGATTCGGGGCC	CACGACCAGGTGATGGCTTCCGGCCAGGGGAGGGCGGAGAGAAAAGGGGCAGGCGGCGGGGCTTGGGGGCACTATGGGCGGGATCTAGGGGTGAATTGGGCGGGGCCTAGCGTTTGATTCGGGGCC	-			P-0088636-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	126	515	0	ENST00000334205.4:c.1422_1428+119del		p.X474_splice	ENST00000334205	NM_003942.2	474																																																																																
CIC	23152	MSKCC	GRCh37	19	42793483	42793483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088636-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	132	617	0	ENST00000575354.2:c.1285G>A	p.Ala429Thr	p.A429T	ENST00000575354	NM_015125.3	429	Gcg/Acg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204881	128204881	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0088636-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	42	611	0	ENST00000341105.2:c.560C>G	p.Thr187Ser	p.T187S	ENST00000341105	NM_032638.4	187	aCc/aGc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290992	15290992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088636-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	117	708	0	ENST00000263388.2:c.3218C>A	p.Pro1073Gln	p.P1073Q	ENST00000263388	NM_000435.2	1073	cCa/cAa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061687	38061687	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088636-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	26	660	0	ENST00000250448.2:c.302T>C	p.Val101Ala	p.V101A	ENST00000250448	NM_004496.3	101	gTg/gCg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163779	32163779	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088636-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	151	546	0	ENST00000375023.3:c.5447T>C	p.Leu1816Pro	p.L1816P	ENST00000375023	NM_004557.3	1816	cTg/cCg																																																																															
IRF4	3662	MSKCC	GRCh37	6	401735	401735	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0088636-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	999	781	0	ENST00000380956.4:c.1057G>C	p.Asp353His	p.D353H	ENST00000380956	NM_001195286.1	353	Gac/Cac																																																																															
POLE	5426	MSKCC	GRCh37	12	133218967	133218967	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0088636-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	53	644	0	ENST00000320574.5:c.4969A>C	p.Ile1657Leu	p.I1657L	ENST00000320574	NM_006231.2	1657	Att/Ctt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69050754	69050754	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0088636-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	130	318	0	ENST00000288368.4:c.4087+2T>A		p.X1363_splice	ENST00000288368	NM_024870.2	1363																																																																																
DDR2	4921	MSKCC	GRCh37	1	162722893	162722893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088636-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	81	541	0	ENST00000367921.3:c.91C>A	p.Arg31Ser	p.R31S	ENST00000367921	NM_006182.2	31	Cgc/Agc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11270923	11270923	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs975845561		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			371	66	360	0	ENST00000361445.4:c.3602G>A	p.Arg1201Gln	p.R1201Q	ENST00000361445	NM_004958.3	1201	cGa/cAa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193107231	193107231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			357	59	420	0	ENST00000367435.3:c.440G>A	p.Arg147His	p.R147H	ENST00000367435	NM_024529.4	147	cGc/cAc																																																																															
STK40	83931	MSKCC	GRCh37	1	36824372	36824372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			365	88	388	0	ENST00000373129.3:c.164G>T	p.Arg55Met	p.R55M	ENST00000373129	NM_032017.1	55	aGg/aTg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429977	78429978	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1200882279		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			363	79	461	0	ENST00000370768.2:c.901dup	p.Ile301AsnfsTer4	p.I301Nfs*4	ENST00000370768	NM_003902.3	301	ata/aAta																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118365442	118365442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			397	38	428	0	ENST00000534358.1:c.5327del	p.Lys1776SerfsTer47	p.K1776Sfs*47	ENST00000534358	NM_005933.3	1775	Aaa/aa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936081	71936081	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			178	34	363	2	ENST00000298229.2:c.57del	p.Ser20ProfsTer7	p.S20Pfs*7	ENST00000298229	NM_001567.3	18	gCc/gc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115111984	115111984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			395	80	475	0	ENST00000257566.3:c.1756G>A	p.Val586Ile	p.V586I	ENST00000257566	NM_016569.3	586	Gtc/Atc																																																																															
POLE	5426	MSKCC	GRCh37	12	133241895	133241895	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1483635586		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			390	82	409	0	ENST00000320574.5:c.2461C>T	p.Arg821Cys	p.R821C	ENST00000320574	NM_006231.2	821	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431843	49431843	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778257510		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			383	77	530	0	ENST00000301067.7:c.9296G>A	p.Arg3099His	p.R3099H	ENST00000301067	NM_003482.3	3099	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448408	49448408	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs797045661		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			382	91	495	1	ENST00000301067.7:c.303del	p.Ser102AlafsTer28	p.S102Afs*28	ENST00000301067	NM_003482.3	101	ggG/gg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			376	75	455	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			366	100	484	2	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
MGA	23269	MSKCC	GRCh37	15	42003137	42003137	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			414	62	538	0	ENST00000219905.7:c.2678del	p.Pro893LeufsTer40	p.P893Lfs*40	ENST00000219905	NM_001164273.1	892	Ccc/cc																																																																															
MGA	23269	MSKCC	GRCh37	15	42059170	42059170	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs756744691		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			489	100	620	1	ENST00000219905.7:c.8895del	p.Thr2966ProfsTer4	p.T2966Pfs*4	ENST00000219905	NM_001164273.1	2964	Ccc/cc																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			319	71	399	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			384	99	479	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																															
TSC2	7249	MSKCC	GRCh37	16	2107113	2107113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45502703		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			302	74	444	0	ENST00000219476.3:c.782G>A	p.Arg261Gln	p.R261Q	ENST00000219476	NM_000548.3	261	cGg/cAg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	341269	341269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371093196		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			266	51	350	0	ENST00000262320.3:c.2215C>T	p.Arg739Cys	p.R739C	ENST00000262320	NM_003502.3	739	Cgc/Tgc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396464	396464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			381	94	557	0	ENST00000262320.3:c.562G>A	p.Glu188Lys	p.E188K	ENST00000262320	NM_003502.3	188	Gaa/Aaa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			413	96	471	3	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			468	93	562	0	ENST00000268489.5:c.5677_5678del	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			329	94	547	2	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			334	83	437	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881329	37881329	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			335	87	489	0	ENST00000269571.5:c.2521C>G	p.Leu841Val	p.L841V	ENST00000269571		841	Ctc/Gtc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs758630849		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			412	39	453	0	ENST00000305921.3:c.1349del	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290061	15290061	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1376652903		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			386	105	607	0	ENST00000263388.2:c.3493G>A	p.Gly1165Ser	p.G1165S	ENST00000263388	NM_000435.2	1165	Ggc/Agc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17954248	17954248	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776850935		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			345	65	483	0	ENST00000458235.1:c.361C>T	p.Arg121Cys	p.R121C	ENST00000458235	NM_000215.3	121	Cgc/Tgc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2223485	2223485	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			272	59	379	0	ENST00000398665.3:c.3596G>A	p.Arg1199Gln	p.R1199Q	ENST00000398665	NM_032482.2	1199	cGa/cAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214660	36214660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			291	89	448	0	ENST00000222270.7:c.3086C>T	p.Pro1029Leu	p.P1029L	ENST00000222270	NM_014727.1	1029	cCc/cTc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			283	78	434	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			400	31	476	3	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
BARD1	580	MSKCC	GRCh37	2	215617226	215617226	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777937955		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			325	81	410	0	ENST00000260947.4:c.1622C>T	p.Ser541Leu	p.S541L	ENST00000260947	NM_000465.2	541	tCg/tTg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			473	77	536	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384651	31384651	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			420	92	515	0	ENST00000328111.2:c.1359del	p.Leu454SerfsTer136	p.L454Sfs*136	ENST00000328111	NM_006892.3	451	gaG/ga																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288141	21288141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			404	102	437	0	ENST00000354336.3:c.386G>A	p.Arg129Gln	p.R129Q	ENST00000354336	NM_005207.3	129	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			432	10	457	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067254	37067254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61751644		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			383	98	473	0	ENST00000231790.2:c.1165C>T	p.Arg389Trp	p.R389W	ENST00000231790	NM_000249.3	389	Cgg/Tgg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934243	49934243	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1407832113		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			416	116	514	3	ENST00000296474.3:c.2264del	p.Gly755ValfsTer19	p.G755Vfs*19	ENST00000296474	NM_002447.2	755	gGt/gt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245359	153245359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			309	61	369	0	ENST00000281708.4:c.1832G>A	p.Gly611Glu	p.G611E	ENST00000281708	NM_033632.3	611	gGa/gAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			377	70	421	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249361	153249361	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			316	71	423	0	ENST00000281708.4:c.1417del	p.Arg473GlufsTer25	p.R473Efs*25	ENST00000281708	NM_033632.3	473	Aga/ga																																																																															
APC	324	MSKCC	GRCh37	5	112170747	112170747	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			349	74	443	0	ENST00000257430.4:c.1847del	p.Leu616TrpfsTer14	p.L616Wfs*14	ENST00000257430	NM_000038.5	615	Ttt/tt																																																																															
APC	324	MSKCC	GRCh37	5	112175909	112175909	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			396	76	492	0	ENST00000257430.4:c.4618G>T	p.Glu1540Ter	p.E1540*	ENST00000257430	NM_000038.5	1540	Gag/Tag																																																																															
TERT	7015	MSKCC	GRCh37	5	1294665	1294665	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			276	41	385	2	ENST00000310581.5:c.336del	p.Glu113ArgfsTer15	p.E113Rfs*15	ENST00000310581	NM_198253.2	112	ccC/cc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31468079	31468079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			355	66	399	0	ENST00000344624.3:c.2333G>A	p.Arg778His	p.R778H	ENST00000344624		778	cGc/cAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589576	67589576	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1289537429		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			241	60	368	0	ENST00000274335.5:c.1344del	p.Lys448AsnfsTer32	p.K448Nfs*32	ENST00000274335		447	Aaa/aa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591246	67591246	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			480	14	420	0	ENST00000274335.5:c.1746-2A>G		p.X582_splice	ENST00000274335		582																																																																																
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			295	94	379	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564511	86564511	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			329	65	526	0	ENST00000274376.6:c.248del	p.Gly83GlufsTer4	p.G83Efs*4	ENST00000274376	NM_002890.2	81	ctG/ct																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199945	138199945	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			342	76	521	0	ENST00000237289.4:c.1368del	p.Pro457LeufsTer20	p.P457Lfs*20	ENST00000237289	NM_001270507.1	455	Ggg/gg																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969983	161969983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			311	70	349	0	ENST00000366898.1:c.986del	p.Gly329AlafsTer106	p.G329Afs*106	ENST00000366898	NM_004562.2	329	gGc/gc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680721	30680721	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61748586		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			388	79	512	0	ENST00000376406.3:c.998C>T	p.Ala333Val	p.A333V	ENST00000376406	NM_014641.2	333	gCg/gTg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32164162	32164162	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			302	78	432	0	ENST00000375023.3:c.5237A>G	p.Asn1746Ser	p.N1746S	ENST00000375023	NM_004557.3	1746	aAc/aGc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821356	32821356	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773916016		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			275	76	456	0	ENST00000354258.4:c.238C>T	p.Leu80Phe	p.L80F	ENST00000354258	NM_000593.5	80	Ctc/Ttc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467637	50467637	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1262982300		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			289	50	389	0	ENST00000331340.3:c.872C>T	p.Thr291Met	p.T291M	ENST00000331340	NM_006060.4	291	aCg/aTg																																																																															
MYC	4609	MSKCC	GRCh37	8	128752729	128752731	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs1203089442		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			384	97	495	0	ENST00000377970.2:c.892_894del	p.Ser298del	p.S298del	ENST00000377970	NM_002467.4	297	cCTTct/cct																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300926	137300926	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748518062		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			307	91	496	0	ENST00000481739.1:c.571C>T	p.Arg191Cys	p.R191C	ENST00000481739	NM_002957.4	191	Cgc/Tgc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223862	53223862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			136	85	242	0	ENST00000375401.3:c.3497G>A	p.Arg1166His	p.R1166H	ENST00000375401	NM_004187.3	1166	cGc/cAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			119	51	226	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241980	72241980	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			309	55	391	0	ENST00000357731.5:c.410T>C	p.Val137Ala	p.V137A	ENST00000357731	NM_173808.2	137	gTt/gCt																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724235	112724237	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			410	90	475	0	ENST00000369452.4:c.121_123del	p.Lys41del	p.K41del	ENST00000369452	NM_007373.3	40	gAAAaa/gaa																																																																															
MSI1	4440	MSKCC	GRCh37	12	120806638	120806638	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			380	77	538	0	ENST00000257552.2:c.98A>G	p.Gln33Arg	p.Q33R	ENST00000257552	NM_002442.3	33	cAg/cGg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99250857	99250857	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			373	97	538	0	ENST00000268035.6:c.161T>C	p.Val54Ala	p.V54A	ENST00000268035	NM_000875.3	54	gTg/gCg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942187	81942187	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			271	62	384	0	ENST00000359376.3:c.1724T>C	p.Leu575Pro	p.L575P	ENST00000359376	NM_002661.3	575	cTg/cCg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879682	37879682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			427	107	621	1	ENST00000269571.5:c.2057C>T	p.Thr686Met	p.T686M	ENST00000269571		686	aCg/aTg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39550346	39550346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			367	94	419	0	ENST00000262039.4:c.457G>A	p.Gly153Arg	p.G153R	ENST00000262039	NM_002647.2	153	Gga/Aga																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39623698	39623698	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			252	51	290	0	ENST00000262039.4:c.2105A>G	p.Asn702Ser	p.N702S	ENST00000262039	NM_002647.2	702	aAc/aGc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144453	11144453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			358	31	370	2	ENST00000344626.4:c.3785G>A	p.Cys1262Tyr	p.C1262Y	ENST00000344626	NM_003072.3	1262	tGc/tAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220096	36220096	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			391	81	578	0	ENST00000222270.7:c.4816T>C	p.Trp1606Arg	p.W1606R	ENST00000222270	NM_014727.1	1606	Tgg/Cgg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503622	47503622	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			323	74	458	0	ENST00000404338.3:c.4177A>G	p.Ser1393Gly	p.S1393G	ENST00000404338	NM_004491.4	1393	Agc/Ggc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5215577	5215577	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200850387		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			358	68	476	0	ENST00000357368.4:c.4126G>A	p.Ala1376Thr	p.A1376T	ENST00000357368	NM_002850.3	1376	Gca/Aca																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662670	227662670	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			374	104	529	0	ENST00000305123.5:c.785A>G	p.Asp262Gly	p.D262G	ENST00000305123	NM_005544.2	262	gAt/gGt																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945387	54945387	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			342	70	432	0	ENST00000312783.6:c.1039A>G	p.Thr347Ala	p.T347A	ENST00000312783	NM_198436.1	347	Aca/Gca																																																																															
ERG	2078	MSKCC	GRCh37	21	39775436	39775436	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			403	105	489	0	ENST00000288319.7:c.584T>C	p.Leu195Pro	p.L195P	ENST00000288319	NM_182918.3	195	cTc/cCc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29442820	29442820	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			463	51	426	0	ENST00000544604.2:c.861C>G	p.Ser287Arg	p.S287R	ENST00000544604	NM_001206998.1	287	agC/agG																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			388	64	424	0	ENST00000289153.2:c.1809_1810dup	p.Arg604ProfsTer5	p.R604Pfs*5	ENST00000289153	NM_006219.2	604	cgg/cCCgg																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260144	149260144	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144141428		P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			297	83	408	0	ENST00000360632.3:c.749G>A	p.Arg250His	p.R250H	ENST00000360632	NM_015472.4	250	cGc/cAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557737	187557737	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			394	75	431	0	ENST00000441802.2:c.3972+2T>C		p.X1324_splice	ENST00000441802	NM_005245.3	1324																																																																																
PHOX2B	8929	MSKCC	GRCh37	4	41748108	41748108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			166	48	307	0	ENST00000226382.2:c.661G>A	p.Ala221Thr	p.A221T	ENST00000226382	NM_003924.3	221	Gct/Act																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31451689	31451689	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			334	61	387	0	ENST00000344624.3:c.2633A>G	p.His878Arg	p.H878R	ENST00000344624		878	cAt/cGt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589561	67589561	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			260	51	357	0	ENST00000274335.5:c.1324A>G	p.Ile442Val	p.I442V	ENST00000274335		442	Att/Gtt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553395	106553395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			311	73	467	0	ENST00000369096.4:c.1360G>T	p.Gly454Cys	p.G454C	ENST00000369096	NM_001198.3	454	Ggc/Tgc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32183058	32183058	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			357	73	469	0	ENST00000375023.3:c.1966C>A	p.Pro656Thr	p.P656T	ENST00000375023	NM_004557.3	656	Cct/Act																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371665	55371665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			284	62	461	0	ENST00000297316.4:c.355G>A	p.Glu119Lys	p.E119K	ENST00000297316	NM_022454.3	119	Gag/Aag																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966696	36966696	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			335	24	402	0	ENST00000358127.4:c.630C>G	p.Asn210Lys	p.N210K	ENST00000358127	NM_001280556.1	210	aaC/aaG																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98244459	98244459	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			295	56	416	0	ENST00000331920.6:c.611A>G	p.Tyr204Cys	p.Y204C	ENST00000331920	NM_000264.3	204	tAc/tGc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39930371	39930374	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0084950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			148	89	253	0	ENST00000378444.4:c.3090_3093del	p.Arg1031LysfsTer23	p.R1031Kfs*23	ENST00000378444	NM_001123385.1	1030	gaAAGA/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0086023-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			210	194	579	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0086023-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			92	73	343	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344498	118344498	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0086023-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			279	91	586	0	ENST00000534358.1:c.2624A>T	p.Glu875Val	p.E875V	ENST00000534358	NM_005933.3	875	gAg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501191		P-0086800-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			508	44	360	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0086800-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	75	316	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0086800-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			423	44	275	1	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455091	50455091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1422790468		P-0086800-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			414	45	324	0	ENST00000331340.3:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000331340	NM_006060.4	213	cGa/cAa																																																																															
RET	5979	MSKCC	GRCh37	10	43612120	43612120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773256580		P-0086800-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			457	45	426	0	ENST00000355710.3:c.2225C>T	p.Thr742Met	p.T742M	ENST00000355710	NM_020975.4	742	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201744589		P-0086800-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			565	61	436	0	ENST00000269305.4:c.892G>A	p.Glu298Lys	p.E298K	ENST00000269305	NM_001126112.2	298	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577599	7577599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086800-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			445	62	324	0	ENST00000269305.4:c.682G>A	p.Asp228Asn	p.D228N	ENST00000269305	NM_001126112.2	228	Gac/Aac																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100451	8100451	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1266983268		P-0086870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	57	766	0	ENST00000346208.3:c.425C>T	p.Ser142Leu	p.S142L	ENST00000346208		142	tCg/tTg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17387338	17387338	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs896136975		P-0086870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	39	579	0	ENST00000359435.4:c.604G>A	p.Val202Met	p.V202M	ENST00000359435	NM_001033549.1	202	Gtg/Atg																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074024	8074037	+	frameshift_variant	Frame_Shift_Del	DEL	AAATATGCATAGTT	AAATATGCATAGTT	-			P-0086870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	169	519	0	ENST00000377482.5:c.622_635del	p.Asn208Ter	p.N208*	ENST00000377482	NM_018948.3	208	AACTATGCATATTTt/t																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39311736	39311736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	33	357	0	ENST00000373001.3:c.923G>A	p.Ser308Asn	p.S308N	ENST00000373001	NM_022157.3	308	aGt/aAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0087968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	8	343	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579542	7579542	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587780728		P-0087968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	9	450	0	ENST00000269305.4:c.145G>A	p.Asp49Asn	p.D49N	ENST00000269305	NM_001126112.2	49	Gat/Aat																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061011	38061011	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0087968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	8	430	0	ENST00000250448.2:c.978del	p.Ala329ProfsTer21	p.A329Pfs*21	ENST00000250448	NM_004496.3	326	ccC/cc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518738	176518738	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200232395		P-0088544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	64	735	0	ENST00000292408.4:c.656G>A	p.Arg219His	p.R219H	ENST00000292408	NM_213647.1	219	cGc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0088544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	28	410	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032566	47032566	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0088544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	66	554	0	ENST00000329236.7:c.241G>T	p.Glu81Ter	p.E81*	ENST00000329236	NM_001204466.1	81	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578218	7578218	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0088562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	336	447	0	ENST00000269305.4:c.631del	p.Thr211LeufsTer36	p.T211Lfs*36	ENST00000269305	NM_001126112.2	211	Act/ct																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955102	17955102	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	121	387	0	ENST00000458235.1:c.125C>A	p.Ser42Tyr	p.S42Y	ENST00000458235	NM_000215.3	42	tCt/tAt																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793326	242793326	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0088562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	123	446	0	ENST00000334409.5:c.751A>T	p.Ile251Phe	p.I251F	ENST00000334409	NM_005018.2	251	Att/Ttt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271217	38271630	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTCATGAGAGAAGACGGAATCCTCCCCTGAGGAGCACGTAGAGCTCCGGGTGTCGGGAAAGCTGGGGGAGTACTGGTCCAGGGGCATGGACAGGTCCAGGTACTCCTGTGATGGGCGAGAGGAAGCAGCGATGGGCCGGGCCCCTCCTCCCTGCTCAGGGAGGTGCGTGCACGCAGTGGGGACGGCCTGAGCTCTGGCTCTGGCACGGGCAGCCTTACCTGGTTGGAGGTCAAGGCCACGATGCGGTCCAGGTCTTCCACCAGCTGCTTGAAGGTGGGTCTCTGTGAGGGCACTGCATGCCAGCAGTCCCGCATCATCATGTACCTGCGGCAGGACTGTAAGGTCAGGGACGTCTCCTGGAGATGGATACTCTCTAGTCTAGCCCCCTGCCCCTCAAGCCCACTCTTGCCCCA	GCTCATGAGAGAAGACGGAATCCTCCCCTGAGGAGCACGTAGAGCTCCGGGTGTCGGGAAAGCTGGGGGAGTACTGGTCCAGGGGCATGGACAGGTCCAGGTACTCCTGTGATGGGCGAGAGGAAGCAGCGATGGGCCGGGCCCCTCCTCCCTGCTCAGGGAGGTGCGTGCACGCAGTGGGGACGGCCTGAGCTCTGGCTCTGGCACGGGCAGCCTTACCTGGTTGGAGGTCAAGGCCACGATGCGGTCCAGGTCTTCCACCAGCTGCTTGAAGGTGGGTCTCTGTGAGGGCACTGCATGCCAGCAGTCCCGCATCATCATGTACCTGCGGCAGGACTGTAAGGTCAGGGACGTCTCCTGGAGATGGATACTCTCTAGTCTAGCCCCCTGCCCCTCAAGCCCACTCTTGCCCCA	-			P-0088562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	103	386	0	ENST00000425967.3:c.2279+40_2491del		p.X760_splice	ENST00000425967	NM_001174067.1	760																																																																																
PTEN	5728	MSKCC	GRCh37	10	89711997	89711997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	31	256	0	ENST00000371953.3:c.615G>A	p.Met205Ile	p.M205I	ENST00000371953	NM_000314.4	205	atG/atA																																																																															
EP300	2033	MSKCC	GRCh37	22	41553266	41553266	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759315982		P-0088566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	54	398	0	ENST00000263253.7:c.3355G>A	p.Asp1119Asn	p.D1119N	ENST00000263253	NM_001429.3	1119	Gat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0088566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	41	299	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434913	49434913	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587783724		P-0088566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	65	415	0	ENST00000301067.7:c.6640G>A	p.Ala2214Thr	p.A2214T	ENST00000301067	NM_003482.3	2214	Gcc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099353	27099353	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	54	400	1	ENST00000324856.7:c.3591del	p.Thr1198HisfsTer8	p.T1198Hfs*8	ENST00000324856	NM_006015.4	1197	tCc/tc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589610	67589618	+	inframe_deletion	In_Frame_Del	DEL	AAAAAAGTC	AAAAAAGTC	-			P-0088566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	67	332	0	ENST00000274335.5:c.1373_1381del	p.Glu458_Arg461delinsGly	p.E458_R461delinsG	ENST00000274335		458	gAAAAAAGTCga/gga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11316202	11316204	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs1170299510		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	32	448	0	ENST00000361445.4:c.550_552del	p.Phe184del	p.F184del	ENST00000361445	NM_004958.3	184	TTC/-																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120460319	120460319	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1446995271		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	73	522	1	ENST00000256646.2:c.5996del	p.Asn1999MetfsTer32	p.N1999Mfs*32	ENST00000256646	NM_024408.3	1999	aAt/at																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258943	16258944	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	37	558	0	ENST00000375759.3:c.6215dup	p.Asn2072LysfsTer51	p.N2072Kfs*51	ENST00000375759	NM_015001.2	2070	gaa/gAaa																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612990	228612990	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1397772335		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	40	523	0	ENST00000366696.1:c.37G>A	p.Gly13Ser	p.G13S	ENST00000366696	NM_003493.2	13	Ggt/Agt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	97	585	1	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46546324	46546324	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	67	456	1	ENST00000262741.5:c.205del	p.Asp69IlefsTer7	p.D69Ifs*7	ENST00000262741	NM_003629.3	69	Gat/at																																																																															
JAK1	3716	MSKCC	GRCh37	1	65312420	65312420	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	30	442	0	ENST00000342505.4:c.1900-1G>T		p.X634_splice	ENST00000342505	NM_002227.2	634																																																																																
SUFU	51684	MSKCC	GRCh37	10	104359295	104359295	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369910221		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	83	372	0	ENST00000369902.3:c.1016G>A	p.Arg339Gln	p.R339Q	ENST00000369902	NM_016169.3	339	cGg/cAg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138915	64138915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	34	267	0	ENST00000334205.4:c.2287del	p.Arg763AlafsTer21	p.R763Afs*21	ENST00000334205	NM_003942.2	761	gCc/gc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	23	565	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426650	121426650	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139016696		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	41	541	0	ENST00000257555.6:c.341G>A	p.Arg114His	p.R114H	ENST00000257555		114	cGt/cAt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	65	454	1	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431721	49431722	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	63	522	0	ENST00000301067.7:c.9417dup	p.Lys3140GlnfsTer36	p.K3140Qfs*36	ENST00000301067	NM_003482.3	3139	-/C																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610116	81610116	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs987282140		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	69	526	0	ENST00000298171.2:c.1714A>G	p.Met572Val	p.M572V	ENST00000298171	NM_000369.2	572	Atg/Gtg																																																																															
BLM	641	MSKCC	GRCh37	15	91347484	91347484	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	34	448	1	ENST00000355112.3:c.3651del	p.Lys1217AsnfsTer62	p.K1217Nfs*62	ENST00000355112	NM_000057.2	1216	Aaa/aa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	69	417	2	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822441	72822441	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	82	602	0	ENST00000268489.5:c.9734A>C	p.Lys3245Thr	p.K3245T	ENST00000268489	NM_006885.3	3245	aAg/aCg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89813084	89813084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs547984666		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	59	408	0	ENST00000389301.3:c.3421G>A	p.Ala1141Thr	p.A1141T	ENST00000389301	NM_000135.2	1141	Gcc/Acc																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690708	33690709	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs746280504		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	36	526	0	ENST00000308377.4:c.118_119del	p.Asp40ProfsTer28	p.D40Pfs*28	ENST00000308377	NM_152270.3	40	GAc/c																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	192	591	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63526126	63526126	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs878854728		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	110	458	0	ENST00000307078.5:c.2500C>T	p.Arg834Trp	p.R834W	ENST00000307078	NM_004655.3	834	Cgg/Tgg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	81	554	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs876659802		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	13	467	0	ENST00000269305.4:c.833C>A	p.Pro278His	p.P278H	ENST00000269305	NM_001126112.2	278	cCt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577144	7577146	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	15	434	0	ENST00000269305.4:c.792_794del	p.Leu265del	p.L265del	ENST00000269305	NM_001126112.2	264	ctACTg/ctg																																																																															
YES1	7525	MSKCC	GRCh37	18	745962	745963	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	38	475	0	ENST00000314574.4:c.559_560del	p.Ser187Ter	p.S187*	ENST00000314574	NM_005433.3	187	AGt/t																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250399	10250399	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755492225		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	70	466	0	ENST00000340748.4:c.3853C>T	p.Arg1285Cys	p.R1285C	ENST00000340748		1285	Cgc/Tgc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265144	10265144	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753235229		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	74	487	0	ENST00000340748.4:c.1796C>T	p.Ala599Val	p.A599V	ENST00000340748		599	gCg/gTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207130	1207130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	35	477	0	ENST00000326873.7:c.218G>A	p.Cys73Tyr	p.C73Y	ENST00000326873	NM_000455.4	73	tGc/tAc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350532	15350532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748633137		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	48	360	1	ENST00000263377.2:c.3383C>T	p.Ser1128Leu	p.S1128L	ENST00000263377	NM_058243.2	1128	tCg/tTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353819	15353819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	18	219	0	ENST00000263377.2:c.3061del	p.His1021IlefsTer47	p.H1021Ifs*47	ENST00000263377	NM_058243.2	1021	Cat/at																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17384941	17384941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	64	463	0	ENST00000359435.4:c.491G>A	p.Arg164His	p.R164H	ENST00000359435	NM_001033549.1	164	cGc/cAc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17950348	17950348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	62	473	0	ENST00000458235.1:c.1379G>T	p.Gly460Val	p.G460V	ENST00000458235	NM_000215.3	460	gGg/gTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	28	177	2	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918796	50918796	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748904485		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	72	459	0	ENST00000440232.2:c.2666G>A	p.Arg889His	p.R889H	ENST00000440232	NM_002691.3	889	cGc/cAc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	64	501	4	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
ASXL2	55252	MSKCC	GRCh37	2	25972584	25972584	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1307171996		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	67	399	0	ENST00000435504.4:c.1841G>A	p.Arg614Gln	p.R614Q	ENST00000435504		614	cGa/cAa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	50	515	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023789	31023789	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771806916		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	81	506	0	ENST00000375687.4:c.3274G>A	p.Val1092Met	p.V1092M	ENST00000375687	NM_015338.5	1092	Gtg/Atg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31379479	31379479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145632647		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	44	411	0	ENST00000328111.2:c.886G>A	p.Val296Ile	p.V296I	ENST00000328111	NM_006892.3	296	Gtc/Atc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264985	46264985	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	26	525	0	ENST00000371998.3:c.1860del	p.Lys620AsnfsTer18	p.K620Nfs*18	ENST00000371998		619	Aaa/aa																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945583	54945583	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	41	372	0	ENST00000312783.6:c.987del	p.Phe329LeufsTer24	p.F329Lfs*24	ENST00000312783	NM_198436.1	329	ttT/tt																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434181	12434182	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	75	449	0	ENST00000287820.6:c.556dup	p.Ser186LysfsTer2	p.S186Kfs*2	ENST00000287820	NM_015869.4	183	-/A																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104893810		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	88	425	0	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098913	47098913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	35	522	0	ENST00000409792.3:c.6361C>T	p.Arg2121Cys	p.R2121C	ENST00000409792	NM_014159.6	2121	Cgc/Tgc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52438566	52438566	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	61	420	0	ENST00000460680.1:c.1153C>T	p.Arg385Ter	p.R385*	ENST00000460680	NM_004656.3	385	Cga/Tga																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	41	612	3	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268144	153268144	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs920052554		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	78	445	0	ENST00000281708.4:c.664C>T	p.Arg222Ter	p.R222*	ENST00000281708	NM_033632.3	222	Cga/Tga																																																																															
TERT	7015	MSKCC	GRCh37	5	1294665	1294665	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	53	446	3	ENST00000310581.5:c.336del	p.Glu113ArgfsTer15	p.E113Rfs*15	ENST00000310581	NM_198253.2	112	ccC/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79961018	79961018	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	83	461	0	ENST00000265081.6:c.415G>T	p.Glu139Ter	p.E139*	ENST00000265081	NM_002439.4	139	Gaa/Taa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324674	31324675	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	42	203	0	ENST00000412585.2:c.133dup	p.Arg45ProfsTer54	p.R45Pfs*54	ENST00000412585	NM_005514.6	45	cgc/cCgc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168767	32168767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	78	495	0	ENST00000375023.3:c.4156G>T	p.Gly1386Cys	p.G1386C	ENST00000375023	NM_004557.3	1386	Ggt/Tgt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	56	425	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271165	38271165	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	36	288	0	ENST00000425967.3:c.2543G>T	p.Gly848Val	p.G848V	ENST00000425967	NM_001174067.1	848	gGc/gTc																																																																															
LYN	4067	MSKCC	GRCh37	8	56910929	56910929	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1218543185		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	61	366	0	ENST00000519728.1:c.1075G>A	p.Glu359Lys	p.E359K	ENST00000519728	NM_002350.3	359	Gag/Aag																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2070461	2070461	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768235436		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	50	343	0	ENST00000349721.2:c.1736C>T	p.Pro579Leu	p.P579L	ENST00000349721	NM_003070.3	579	cCg/cTg																																																																															
CDKN2B-AS1	100048912	MSKCC	GRCh37	9	21994303	21994303	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	19	371	0				ENST00000428597																																																																																		
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	45	470	0	ENST00000331920.6:c.3921del	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98232132	98232132	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778627715		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	25	380	1	ENST00000331920.6:c.1810G>A	p.Glu604Lys	p.E604K	ENST00000331920	NM_000264.3	604	Gag/Aag																																																																															
GATA1	2623	MSKCC	GRCh37	X	48651681	48651681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	58	456	0	ENST00000376670.3:c.847G>A	p.Gly283Ser	p.G283S	ENST00000376670	NM_002049.3	283	Ggc/Agc																																																																															
AR	367	MSKCC	GRCh37	X	66766180	66766180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	67	431	0	ENST00000374690.3:c.1192G>A	p.Ala398Thr	p.A398T	ENST00000374690	NM_000044.3	398	Gcc/Acc																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150935125	150935125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	78	423	0	ENST00000271640.5:c.3221G>A	p.Arg1074His	p.R1074H	ENST00000271640	NM_001145415.1	1074	cGc/cAc																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230493032	230493032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	73	457	1	ENST00000525115.1:c.160G>A	p.Val54Met	p.V54M	ENST00000525115		54	Gtg/Atg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089567	27089567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	25	599	0	ENST00000324856.7:c.2523G>A	p.Met841Ile	p.M841I	ENST00000324856	NM_006015.4	841	atG/atA																																																																															
TET1	80312	MSKCC	GRCh37	10	70332295	70332295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	33	458	0	ENST00000373644.4:c.200C>A	p.Pro67His	p.P67H	ENST00000373644	NM_030625.2	67	cCc/cAc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102206949	102206949	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	72	377	0	ENST00000263464.3:c.1577T>G	p.Phe526Cys	p.F526C	ENST00000263464	NM_001165.4	526	tTt/tGt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118347635	118347635	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	25	471	0	ENST00000534358.1:c.3272C>A	p.Pro1091His	p.P1091H	ENST00000534358	NM_005933.3	1091	cCc/cAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373705	118373705	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	63	481	0	ENST00000534358.1:c.7098G>T	p.Glu2366Asp	p.E2366D	ENST00000534358	NM_005933.3	2366	gaG/gaT																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631147	69631147	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	74	485	0	ENST00000334134.2:c.265A>G	p.Arg89Gly	p.R89G	ENST00000334134	NM_005247.2	89	Agg/Ggg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434414	121434414	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	30	522	0	ENST00000257555.6:c.1181del	p.Pro394GlnfsTer19	p.P394Qfs*19	ENST00000257555		393	tCc/tc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285567	46285567	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	68	378	0	ENST00000334344.6:c.4929del	p.Gln1644ArgfsTer57	p.Q1644Rfs*57	ENST00000334344	NM_152641.2	1643	Ttt/tt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433683	49433683	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	35	515	0	ENST00000301067.7:c.7870T>C	p.Ser2624Pro	p.S2624P	ENST00000301067	NM_003482.3	2624	Tcc/Ccc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445257	49445257	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs539274614		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	96	600	0	ENST00000301067.7:c.2209C>T	p.Arg737Trp	p.R737W	ENST00000301067	NM_003482.3	737	Cgg/Tgg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436728	110436728	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	53	446	0	ENST00000375856.3:c.1673G>T	p.Arg558Leu	p.R558L	ENST00000375856	NM_003749.2	558	cGg/cTg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26967537	26967537	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	85	414	0	ENST00000381527.3:c.680T>C	p.Leu227Pro	p.L227P	ENST00000381527	NM_001260.1	227	cTa/cCa																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134075	41134075	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	75	530	0	ENST00000379561.5:c.1553A>T	p.Asn518Ile	p.N518I	ENST00000379561	NM_002015.3	518	aAt/aTt																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134322	41134322	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	66	525	0	ENST00000379561.5:c.1306del	p.Gln436ArgfsTer17	p.Q436Rfs*17	ENST00000379561	NM_002015.3	436	Cag/ag																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986884	36986884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	31	404	0	ENST00000354822.5:c.805G>A	p.Gly269Ser	p.G269S	ENST00000354822	NM_001079668.2	269	Ggc/Agc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95557638	95557638	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	9	515	0	ENST00000343455.3:c.5429A>G	p.Asp1810Gly	p.D1810G	ENST00000343455	NM_177438.2	1810	gAt/gGt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3832834	3832834	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	21	435	0	ENST00000262367.5:c.1424C>A	p.Pro475His	p.P475H	ENST00000262367	NM_004380.2	475	cCc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828477	72828477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	76	517	0	ENST00000268489.5:c.8104C>T	p.Arg2702Trp	p.R2702W	ENST00000268489	NM_006885.3	2702	Cgg/Tgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991647	72991647	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	33	474	0	ENST00000268489.5:c.2398del	p.Thr800ProfsTer24	p.T800Pfs*24	ENST00000268489	NM_006885.3	800	Acc/cc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350660	89350660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	83	490	0	ENST00000301030.4:c.2290G>A	p.Glu764Lys	p.E764K	ENST00000301030	NM_001256183.1	764	Gag/Aag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15967450	15967450	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369094623		P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	77	399	0	ENST00000268712.3:c.5153G>A	p.Arg1718Gln	p.R1718Q	ENST00000268712	NM_006311.3	1718	cGg/cAg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18280024	18280024	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	54	349	0	ENST00000222254.8:c.2107C>T	p.Gln703Ter	p.Q703*	ENST00000222254	NM_005027.3	703	Cag/Tag																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793154	33793154	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	24	383	0	ENST00000498907.2:c.167G>C	p.Cys56Ser	p.C56S	ENST00000498907	NM_004364.3	56	tGc/tCc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4101037	4101037	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	59	293	0	ENST00000262948.5:c.685G>T	p.Gly229Cys	p.G229C	ENST00000262948	NM_030662.3	229	Ggc/Tgc																																																																															
AXL	558	MSKCC	GRCh37	19	41737093	41737093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	46	485	0	ENST00000301178.4:c.673C>A	p.Pro225Thr	p.P225T	ENST00000301178	NM_021913.4	225	Ccc/Acc																																																																															
BARD1	580	MSKCC	GRCh37	2	215632267	215632267	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	31	412	0	ENST00000260947.4:c.1507A>C	p.Lys503Gln	p.K503Q	ENST00000260947	NM_000465.2	503	Aag/Cag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735427	40735430	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TCTG	TCTG	-			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	55	460	0	ENST00000373198.4:c.3443_3446del	p.Thr1148ArgfsTer56	p.T1148Rfs*56	ENST00000373198	NM_133170.3	1148	aCAGAg/ag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134898722	134898722	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	83	529	0	ENST00000398015.3:c.1780T>C	p.Tyr594His	p.Y594H	ENST00000398015	NM_004441.4	594	Tac/Cac																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275165	41275165	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	107	535	0	ENST00000349496.5:c.1331T>C	p.Ile444Thr	p.I444T	ENST00000349496	NM_001904.3	444	aTa/aCa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162912	47162912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	72	534	0	ENST00000409792.3:c.3214G>A	p.Val1072Met	p.V1072M	ENST00000409792	NM_014159.6	1072	Gtg/Atg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165440	47165440	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	88	567	0	ENST00000409792.3:c.686del	p.Leu229TyrfsTer3	p.L229Yfs*3	ENST00000409792	NM_014159.6	229	tTa/ta																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217297	66217297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	61	407	0	ENST00000273854.3:c.2318C>T	p.Thr773Ile	p.T773I	ENST00000273854	NM_004439.5	773	aCt/aTt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180045830	180045830	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	65	519	0	ENST00000261937.6:c.2941del	p.Leu981SerfsTer26	p.L981Sfs*26	ENST00000261937	NM_182925.4	981	Ctc/tc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046688	180046688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	32	584	0	ENST00000261937.6:c.2624C>T	p.Thr875Ile	p.T875I	ENST00000261937	NM_182925.4	875	aCc/aTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048168	180048168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	59	453	0	ENST00000261937.6:c.2105C>T	p.Ala702Val	p.A702V	ENST00000261937	NM_182925.4	702	gCc/gTc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324905	31324905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	29	411	0	ENST00000412585.2:c.31C>A	p.Leu11Met	p.L11M	ENST00000412585	NM_005514.6	11	Ctg/Atg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818207	32818207	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	93	471	0	ENST00000354258.4:c.1318T>G	p.Phe440Val	p.F440V	ENST00000354258	NM_000593.5	440	Ttt/Gtt																																																																															
BRAF	673	MSKCC	GRCh37	7	140507823	140507823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	69	325	0	ENST00000288602.6:c.648G>T	p.Trp216Cys	p.W216C	ENST00000288602	NM_004333.4	216	tgG/tgT																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38153366	38153366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	55	424	0	ENST00000317025.8:c.2863G>T	p.Gly955Cys	p.G955C	ENST00000317025	NM_023034.1	955	Ggc/Tgc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38186922	38186922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	61	448	0	ENST00000317025.8:c.1555A>G	p.Ile519Val	p.I519V	ENST00000317025	NM_023034.1	519	Atc/Gtc																																																																															
BTK	695	MSKCC	GRCh37	X	100613624	100613624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	61	461	0	ENST00000308731.7:c.955G>A	p.Val319Met	p.V319M	ENST00000308731	NM_000061.2	319	Gtg/Atg																																																																															
PHF6	84295	MSKCC	GRCh37	X	133512129	133512129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	64	360	0	ENST00000332070.3:c.233C>T	p.Thr78Met	p.T78M	ENST00000332070	NM_032458.2	78	aCg/aTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933515	39933515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	83	500	0	ENST00000378444.4:c.1084G>A	p.Ala362Thr	p.A362T	ENST00000378444	NM_001123385.1	362	Gcc/Acc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411723	63411723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	59	587	0	ENST00000330258.3:c.1444G>T	p.Asp482Tyr	p.D482Y	ENST00000330258	NM_152424.3	482	Gat/Tat																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965475	68965475	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760923944		P-0081243-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			429	36	319	0	ENST00000288368.4:c.1087C>T	p.Arg363Trp	p.R363W	ENST00000288368	NM_024870.2	363	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081243-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			293	67	230	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578540	+	inframe_deletion	In_Frame_Del	DEL	ATCTTGTTG	ATCTTGTTG	-			P-0081243-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			568	68	336	0	ENST00000269305.4:c.390_398del	p.Asn131_Met133del	p.N131_M133del	ENST00000269305	NM_001126112.2	130	ctCAACAAGATg/ctg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010894-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			76	23	154	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99193459	99193459	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1330981099		P-0010894-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			455	44	362	0	ENST00000074304.5:c.2654G>A	p.Arg885His	p.R885H	ENST00000074304	NM_001134224.1	885	cGc/cAc																																																																															
BARD1	580	MSKCC	GRCh37	2	215645858	215645858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010894-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			285	44	375	0	ENST00000260947.4:c.740C>T	p.Ser247Phe	p.S247F	ENST00000260947	NM_000465.2	247	tCt/tTt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176696652	176696652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010894-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	60	305	0	ENST00000439151.2:c.5353G>A	p.Asp1785Asn	p.D1785N	ENST00000439151	NM_022455.4	1785	Gat/Aat																																																																															
CDK8	1024	MSKCC	GRCh37	13	26956987	26956987	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010894-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	47	218	0	ENST00000381527.3:c.493G>C	p.Glu165Gln	p.E165Q	ENST00000381527	NM_001260.1	165	Gag/Cag																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012379	29012379	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1387615627		P-0010894-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			202	112	296	0	ENST00000282397.4:c.492C>A	p.Asn164Lys	p.N164K	ENST00000282397	NM_002019.4	164	aaC/aaA																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59885981	59885981	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010894-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	83	398	0	ENST00000259008.2:c.765G>C	p.Gln255His	p.Q255H	ENST00000259008	NM_032043.2	255	caG/caC																																																																															
RB1	5925	MSKCC	GRCh37	13	48934261	48934261	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0010894-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			65	60	233	0	ENST00000267163.4:c.716del	p.Tyr239LeufsTer25	p.Y239Lfs*25	ENST00000267163	NM_000321.2	239	tAt/tt																																																																															
MET	4233	MSKCC	GRCh37	7	116412033	116412048	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTCCAGAAGGTATA	TTTTCCAGAAGGTATA	-			P-0010894-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			179	119	379	0	ENST00000397752.3:c.3021_3028+8del		p.X1007_splice	ENST00000397752	NM_000245.2	1007																																																																																
ELF3	1999	MSKCC	GRCh37	1	201981809	201981809	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010894-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			633	95	357	0	ENST00000359651.3:c.520C>G	p.Gln174Glu	p.Q174E	ENST00000359651		174	Cag/Gag																																																																															
NF1	4763	MSKCC	GRCh37	17	29663375	29663375	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010894-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			226	49	263	0	ENST00000358273.4:c.6031C>G	p.Leu2011Val	p.L2011V	ENST00000358273	NM_001042492.2	2011	Cta/Gta																																																																															
PREX2	80243	MSKCC	GRCh37	8	68999977	68999977	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			395	30	344	0	ENST00000288368.4:c.2046T>G	p.Asp682Glu	p.D682E	ENST00000288368	NM_024870.2	682	gaT/gaG																																																																															
ROS1	6098	MSKCC	GRCh37	6	117709134	117709134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			301	248	396	0	ENST00000368508.3:c.1823G>T	p.Trp608Leu	p.W608L	ENST00000368508	NM_002944.2	608	tGg/tTg																																																																															
RB1	5925	MSKCC	GRCh37	13	49039503	49039503	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0072887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			71	200	278	0	ENST00000267163.4:c.2488A>T	p.Arg830Ter	p.R830*	ENST00000267163	NM_000321.2	830	Aga/Tga																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216718	2216718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			445	307	532	0	ENST00000398665.3:c.2362G>A	p.Asp788Asn	p.D788N	ENST00000398665	NM_032482.2	788	Gac/Aac																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244421	41244422	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0072887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			57	195	418	0	ENST00000357654.3:c.3126_3127del	p.Ser1042ArgfsTer3	p.S1042Rfs*3	ENST00000357654	NM_007294.3	1042	agCAat/agat																																																																															
AGO2	27161	MSKCC	GRCh37	8	141542522	141542522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1787	270	365	0	ENST00000220592.5:c.2464C>T	p.His822Tyr	p.H822Y	ENST00000220592	NM_012154.3	822	Cat/Tat																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495682	72495682	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			80	232	345	0	ENST00000477973.2:c.388C>A	p.Cys130Ter	p.C130*	ENST00000477973	NM_012234.5	130	tgC/tgA																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46277854	46277854	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0072887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1226	373	316	0	ENST00000371998.3:c.3651+1G>A		p.X1217_splice	ENST00000371998		1217																																																																																
RAD51B	5890	MSKCC	GRCh37	14	68353878	68353878	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			54	236	396	0	ENST00000487270.1:c.713A>G	p.Glu238Gly	p.E238G	ENST00000487270	NM_133509.3	238	gAg/gGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584518	48584519	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	T			P-0072887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			92	258	379	0	ENST00000342988.3:c.691_692delinsT	p.Gly231SerfsTer10	p.G231Sfs*10	ENST00000342988	NM_005359.5	231	GGc/Tc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602329	10602329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			245	132	443	0	ENST00000171111.5:c.1249G>T	p.Gly417Trp	p.G417W	ENST00000171111	NM_203500.1	417	Ggg/Tgg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220433	1220433	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881979		P-0086789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	121	477	0	ENST00000326873.7:c.526G>A	p.Asp176Asn	p.D176N	ENST00000326873	NM_000455.4	176	Gac/Aac																																																																															
ATRX	546	MSKCC	GRCh37	X	76937576	76937576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			292	96	394	0	ENST00000373344.5:c.3172G>A	p.Asp1058Asn	p.D1058N	ENST00000373344	NM_000489.3	1058	Gat/Aat																																																																															
FYN	2534	MSKCC	GRCh37	6	112015688	112015688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	51	429	0	ENST00000368678.4:c.1154A>G	p.His385Arg	p.H385R	ENST00000368678		385	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0086789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			151	102	257	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468478	89468478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			213	129	371	1	ENST00000336596.2:c.2012C>A	p.Ala671Glu	p.A671E	ENST00000336596	NM_005233.5	671	gCa/gAa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941511	71941511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0086789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			408	54	455	0	ENST00000298229.2:c.1196G>T	p.Arg399Leu	p.R399L	ENST00000298229	NM_001567.3	399	cGg/cTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467527	66467527	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			373	81	373	0	ENST00000273854.3:c.742A>G	p.Thr248Ala	p.T248A	ENST00000273854	NM_004439.5	248	Act/Gct																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259013	16259013	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	284	432	0	ENST00000375759.3:c.6278T>C	p.Leu2093Pro	p.L2093P	ENST00000375759	NM_015001.2	2093	cTg/cCg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9778839	9778839	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	55	408	0	ENST00000377346.4:c.1108del	p.Val370CysfsTer28	p.V370Cfs*28	ENST00000377346	NM_005026.3	370	Gtg/tg																																																																															
ATM	472	MSKCC	GRCh37	11	108196880	108196880	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	169	287	1	ENST00000278616.4:c.6908del	p.Lys2303ArgfsTer7	p.K2303Rfs*7	ENST00000278616	NM_000051.3	2301	gcA/gc																																																																															
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	101	208	0	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	304	448	2	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
IGF2	3481	MSKCC	GRCh37	11	2156699	2156699	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs975030738		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	279	439	0	ENST00000434045.2:c.223G>A	p.Ala75Thr	p.A75T	ENST00000434045	NM_001127598.1	75	Gcc/Acc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948747	71948748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs760925109		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	214	443	3	ENST00000298229.2:c.3466dup	p.Arg1156ProfsTer59	p.R1156Pfs*59	ENST00000298229	NM_001567.3	1153	-/C																																																																															
GAB2	9846	MSKCC	GRCh37	11	77937649	77937650	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769890102		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	111	257	1	ENST00000361507.4:c.1068dup	p.Lys357GlnfsTer21	p.K357Qfs*21	ENST00000361507	NM_080491.2	356	-/C																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120697	115120697	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	62	425	0	ENST00000257566.3:c.309del	p.Lys104ArgfsTer35	p.K104Rfs*35	ENST00000257566	NM_016569.3	103	ccC/cc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121437091	121437091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs483353044		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	243	330	0	ENST00000257555.6:c.1522G>A	p.Glu508Lys	p.E508K	ENST00000257555		508	Gag/Aag																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	166	329	0	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	106	237	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CCND2	894	MSKCC	GRCh37	12	4385243	4385243	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	250	329	0	ENST00000261254.3:c.271del	p.Val91SerfsTer28	p.V91Sfs*28	ENST00000261254	NM_001759.3	90	Ggg/gg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444378	49444378	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	315	464	0	ENST00000301067.7:c.2993del	p.Pro998LeufsTer2	p.P998Lfs*2	ENST00000301067	NM_003482.3	998	cCt/ct																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972800	32972800	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397507568		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	203	358	0	ENST00000380152.3:c.10150C>T	p.Arg3384Ter	p.R3384*	ENST00000380152		3384	Cga/Tga																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38641674	38641674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	123	286	0	ENST00000299084.4:c.634G>A	p.Val212Ile	p.V212I	ENST00000299084	NM_152594.2	212	Gta/Ata																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779703	3779703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	254	370	0	ENST00000262367.5:c.5345C>T	p.Ala1782Val	p.A1782V	ENST00000262367	NM_004380.2	1782	gCg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781420	3781421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	63	390	0	ENST00000262367.5:c.4944dup	p.Ile1649HisfsTer11	p.I1649Hfs*11	ENST00000262367	NM_004380.2	1648	-/C																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	55	315	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351057	89351057	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	250	410	0	ENST00000301030.4:c.1893del	p.Lys631AsnfsTer22	p.K631Nfs*22	ENST00000301030	NM_001256183.1	631	aaA/aa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131402	17131402	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs398124537		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	258	394	0	ENST00000285071.4:c.50G>A	p.Arg17His	p.R17H	ENST00000285071	NM_144997.5	17	cGc/cAc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs80357522		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	191	368	1	ENST00000357654.3:c.1961del	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	583	473	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	208	274	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216380	7216380	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	298	401	0	ENST00000380728.2:c.868del	p.Gln290SerfsTer55	p.Q290Sfs*55	ENST00000380728		290	Cag/ag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603020	48603020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	159	222	0	ENST00000342988.3:c.1321C>T	p.Arg441Cys	p.R441C	ENST00000342988	NM_005359.5	441	Cgt/Tgt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285030	15285030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	218	328	1	ENST00000263388.2:c.4585G>A	p.Ala1529Thr	p.A1529T	ENST00000263388	NM_000435.2	1529	Gcc/Acc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15308382	15308383	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs749829137		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	223	373	0	ENST00000263388.2:c.125dup	p.Cys43LeufsTer32	p.C43Lfs*32	ENST00000263388	NM_000435.2	42	cct/ccCt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621882	1621882	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs561310316		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	256	420	0	ENST00000344749.5:c.910G>A	p.Val304Ile	p.V304I	ENST00000344749	NM_001136139.2	304	Gtc/Atc																																																																															
CIC	23152	MSKCC	GRCh37	19	42794056	42794056	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763135165		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	230	322	0	ENST00000575354.2:c.1417G>A	p.Asp473Asn	p.D473N	ENST00000575354	NM_015125.3	473	Gac/Aac																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231449	5231449	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	247	339	0	ENST00000357368.4:c.2027del	p.Pro676ArgfsTer134	p.P676Rfs*134	ENST00000357368	NM_002850.3	676	cCg/cg																																																																															
INSR	3643	MSKCC	GRCh37	19	7117120	7117120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	209	308	0	ENST00000302850.5:c.4096G>A	p.Gly1366Arg	p.G1366R	ENST00000302850	NM_000208.2	1366	Gga/Aga																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630511	47630511	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63750951		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	252	360	0	ENST00000233146.2:c.181C>T	p.Gln61Ter	p.Q61*	ENST00000233146	NM_000251.2	61	Cag/Tag																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175788	24175788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	233	422	0	ENST00000263121.7:c.1016C>T	p.Ala339Val	p.A339V	ENST00000263121	NM_003073.3	339	gCc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519930		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	29	312	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																															
KIT	3815	MSKCC	GRCh37	4	55561861	55561861	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201872586		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	47	357	0	ENST00000288135.5:c.251C>T	p.Thr84Met	p.T84M	ENST00000288135	NM_000222.2	84	aCg/aTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	80057491	80057492	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	25	321	0	ENST00000265081.6:c.1896dup	p.Cys633MetfsTer28	p.C633Mfs*28	ENST00000265081	NM_002439.4	630	-/A																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199916	138199916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	260	371	0	ENST00000237289.4:c.1334C>T	p.Pro445Leu	p.P445L	ENST00000237289	NM_001270507.1	445	cCc/cTc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100411	157100411	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752684703		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	112	107	0	ENST00000346085.5:c.1348C>T	p.Pro450Ser	p.P450S	ENST00000346085	NM_020732.3	450	Ccg/Tcg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681594	30681594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762846533		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	283	401	0	ENST00000376406.3:c.503C>T	p.Ser168Leu	p.S168L	ENST00000376406	NM_014641.2	168	tCg/tTg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	264	439	1	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	56	415	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55229246	55229246	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs564398642		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	262	412	0	ENST00000275493.2:c.1553C>T	p.Pro518Leu	p.P518L	ENST00000275493	NM_005228.3	518	cCg/cTg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6042220	6042220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771300829		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	223	323	0	ENST00000265849.7:c.401G>A	p.Arg134Gln	p.R134Q	ENST00000265849	NM_000535.5	134	cGa/cAa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737622	145737624	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs747349932		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	271	475	0	ENST00000428558.2:c.3139_3141del	p.Glu1047del	p.E1047del	ENST00000428558	NM_004260.3	1047	GAG/-																																																																															
PREX2	80243	MSKCC	GRCh37	8	69002940	69002940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	198	288	0	ENST00000288368.4:c.2240G>A	p.Arg747Gln	p.R747Q	ENST00000288368	NM_024870.2	747	cGg/cAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	536	396	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932085	39932085	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	218	407	0	ENST00000378444.4:c.2514del	p.Lys839SerfsTer17	p.K839Sfs*17	ENST00000378444	NM_001123385.1	838	ccC/cc																																																																															
CTR9	9646	MSKCC	GRCh37	11	10800582	10800582	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754443800		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	179	312	0	ENST00000361367.2:c.3452C>T	p.Ser1151Leu	p.S1151L	ENST00000361367	NM_014633.3	1151	tCg/tTg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67198954	67198954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	206	359	0	ENST00000312629.5:c.425G>A	p.Gly142Asp	p.G142D	ENST00000312629	NM_003952.2	142	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49422878	49422879	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	298	414	0	ENST00000301067.7:c.14216dup	p.Val4740CysfsTer42	p.V4740Cfs*42	ENST00000301067	NM_003482.3	4739	cct/ccCt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89858913	89858913	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	207	313	0	ENST00000389301.3:c.1049G>T	p.Arg350Leu	p.R350L	ENST00000389301	NM_000135.2	350	cGg/cTg																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38788559	38788559	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761299232		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	208	304	0	ENST00000348513.6:c.602G>A	p.Arg201His	p.R201H	ENST00000348513	NM_003079.4	201	cGc/cAc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370247	40370247	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	241	314	0	ENST00000293328.3:c.1091T>C	p.Met364Thr	p.M364T	ENST00000293328	NM_012448.3	364	aTg/aCg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11169467	11169467	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs985886104		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	231	298	0	ENST00000344626.4:c.4537C>T	p.Arg1513Cys	p.R1513C	ENST00000344626	NM_003072.3	1513	Cgc/Tgc																																																																															
CIC	23152	MSKCC	GRCh37	19	42794961	42794961	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	252	380	0	ENST00000575354.2:c.2041A>G	p.Ser681Gly	p.S681G	ENST00000575354	NM_015125.3	681	Agc/Ggc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5219993	5219993	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202091186		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	225	321	1	ENST00000357368.4:c.3722G>A	p.Arg1241His	p.R1241H	ENST00000357368	NM_002850.3	1241	cGc/cAc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086181	16086181	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	233	322	0	ENST00000281043.3:c.1357C>T	p.Gln453Ter	p.Q453*	ENST00000281043	NM_005378.4	453	Cag/Tag																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62325743	62325743	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	A			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	171	297	0	ENST00000482936.1:c.3011C>A	p.Pro1004His	p.P1004H	ENST00000482936		1004	cCc/cAc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713925	30713925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	282	433	2	ENST00000359013.4:c.1325G>A	p.Gly442Glu	p.G442E	ENST00000359013	NM_001024847.2	442	gGg/gAg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37058999	37058999	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs63751194		P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	223	292	0	ENST00000231790.2:c.793C>A	p.Arg265Ser	p.R265S	ENST00000231790	NM_000249.3	265	Cgt/Agt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259117	89259117	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	197	342	0	ENST00000336596.2:c.264del	p.Arg89GlyfsTer25	p.R89Gfs*25	ENST00000336596	NM_005233.5	87	gtC/gt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86679533	86679534	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	94	216	0	ENST00000274376.6:c.2696_2697del	p.Phe899CysfsTer36	p.F899Cfs*36	ENST00000274376	NM_002890.2	898	ggTTtt/ggtt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120851	94120851	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	192	340	0	ENST00000369303.4:c.200del	p.Pro67ArgfsTer34	p.P67Rfs*34	ENST00000369303	NM_004440.3	67	cCg/cg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70982002	70982002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	51	342	0	ENST00000276594.2:c.94C>T	p.Pro32Ser	p.P32S	ENST00000276594	NM_024504.3	32	Cct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0088480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	139	248	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0088480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	230	321	0	ENST00000269305.4:c.783-1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0088480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	109	256	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175531	112175532	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0088480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	159	348	0	ENST00000257430.4:c.4241dup	p.Ser1415LysfsTer8	p.S1415Kfs*8	ENST00000257430	NM_000038.5	1414	gta/gTta																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268023	55268023	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201830126		P-0088480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	132	387	0	ENST00000275493.2:c.2863G>A	p.Ala955Thr	p.A955T	ENST00000275493	NM_005228.3	955	Gca/Aca																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798306	45798324	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCTGCAGGGTCTCTGCT	CTGCTGCAGGGTCTCTGCT	-			P-0088480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	336	531	0	ENST00000372115.3:c.570_588del	p.Ala191SerfsTer29	p.A191Sfs*29	ENST00000372115	NM_001048171.1	190	acAGCAGAGACCCTGCAGCAG/ac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56434825	56434851	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCACCAGGCTGGGCCGACAGCACCTGG	TCACCAGGCTGGGCCGACAGCACCTGG	-			P-0088480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	328	411	0	ENST00000407977.2:c.2286_2308+4del		p.X762_splice	ENST00000407977		762																																																																																
PREX2	80243	MSKCC	GRCh37	8	68939500	68939500	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	114	253	0	ENST00000288368.4:c.485T>C	p.Leu162Ser	p.L162S	ENST00000288368	NM_024870.2	162	tTg/tCg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0088504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			44	14	120	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
MGA	23269	MSKCC	GRCh37	15	42005421	42005421	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0088504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	86	516	0	ENST00000219905.7:c.3157C>G	p.Arg1053Gly	p.R1053G	ENST00000219905	NM_001164273.1	1053	Cga/Gga																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279943	18279943	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	72	431	0	ENST00000222254.8:c.2026G>A	p.Gly676Ser	p.G676S	ENST00000222254	NM_005027.3	676	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578227	7578237	+	frameshift_variant	Frame_Shift_Del	DEL	CATCCAAATAC	CATCCAAATAC	-			P-0088504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	62	507	0	ENST00000269305.4:c.612_622del	p.Tyr205GlnfsTer7	p.Y205Qfs*7	ENST00000269305	NM_001126112.2	204	gaGTATTTGGATGac/gaac																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0072414-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	538	353	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851576	63851576	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369904878		P-0072414-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			563	66	381	0	ENST00000279873.7:c.2354G>A	p.Arg785His	p.R785H	ENST00000279873	NM_032199.2	785	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577076	7577083	+	frameshift_variant	Frame_Shift_Del	DEL	TCTCTTCC	TCTCTTCC	-			P-0072414-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			406	177	361	0	ENST00000269305.4:c.855_862del	p.Glu286SerfsTer17	p.E286Sfs*17	ENST00000269305	NM_001126112.2	285	gaGGAAGAGAat/gaat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845625	151845625	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072414-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			710	210	391	0	ENST00000262189.6:c.13387G>C	p.Val4463Leu	p.V4463L	ENST00000262189	NM_170606.2	4463	Gtc/Ctc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141424	11141424	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072414-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			509	47	354	0	ENST00000344626.4:c.3401A>G	p.Asp1134Gly	p.D1134G	ENST00000344626	NM_003072.3	1134	gAc/gGc																																																																															
BBC3	27113	MSKCC	GRCh37	19	47725116	47725116	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072414-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			544	126	384	0	ENST00000449228.1:c.628C>G	p.His210Asp	p.H210D	ENST00000449228	NM_001127240.2	210	Cat/Gat																																																																															
ERG	2078	MSKCC	GRCh37	21	39775575	39775575	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072414-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			609	53	350	0	ENST00000288319.7:c.445G>C	p.Glu149Gln	p.E149Q	ENST00000288319	NM_182918.3	149	Gaa/Caa																																																																															
MAD2L2	10459	MSKCC	GRCh37	1	11736180	11736180	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072414-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			551	112	281	0	ENST00000235310.3:c.350C>G	p.Ser117Cys	p.S117C	ENST00000235310		117	tCt/tGt																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67626691	67626691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072414-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	48	221	0	ENST00000272342.5:c.362G>T	p.Arg121Ile	p.R121I	ENST00000272342	NM_019002.3	121	aGa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084170-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	30	652	0	ENST00000269305.4:c.476C>A	p.Ala159Asp	p.A159D	ENST00000269305	NM_001126112.2	159	gCc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0084170-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			298	33	346	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
LYN	4067	MSKCC	GRCh37	8	56864624	56864624	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084170-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			317	36	439	0	ENST00000519728.1:c.587C>G	p.Ser196Cys	p.S196C	ENST00000519728	NM_002350.3	196	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0086381-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	271	450	0	ENST00000269305.4:c.686_687del	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857326	9857326	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086381-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	169	450	0	ENST00000330684.3:c.4075C>G	p.Pro1359Ala	p.P1359A	ENST00000330684	NM_001134407.1	1359	Cca/Gca																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644930	67644930	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086381-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	185	524	0	ENST00000264010.4:c.195G>C	p.Gln65His	p.Q65H	ENST00000264010	NM_006565.3	65	caG/caC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581157	48581157	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0087994-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			81	103	375	0	ENST00000342988.3:c.461C>G	p.Ser154Ter	p.S154*	ENST00000342988	NM_005359.5	154	tCa/tGa																																																																															
TET2	54790	MSKCC	GRCh37	4	106156003	106156003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087994-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	221	624	0	ENST00000380013.4:c.904G>A	p.Asp302Asn	p.D302N	ENST00000380013	NM_001127208.2	302	Gat/Aat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151849931	151849931	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0087994-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	194	507	0	ENST00000262189.6:c.12385A>G	p.Ser4129Gly	p.S4129G	ENST00000262189	NM_170606.2	4129	Agc/Ggc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873442	151873442	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087994-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			301	193	563	0	ENST00000262189.6:c.9096G>C	p.Met3032Ile	p.M3032I	ENST00000262189	NM_170606.2	3032	atG/atC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891043	151891103	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TATATACACATGTGTGTGAATATAATGTAGAATTATAAAGTCATAACATACCCTGATTGTG	TATATACACATGTGTGTGAATATAATGTAGAATTATAAAGTCATAACATACCCTGATTGTG	-			P-0087994-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			155	130	222	0	ENST00000262189.6:c.4651_4660+51del		p.X1551_splice	ENST00000262189	NM_170606.2	1551																																																																																
KLF5	688	MSKCC	GRCh37	13	73636318	73636318	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087994-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			639	50	586	0	ENST00000377687.4:c.581G>C	p.Ser194Thr	p.S194T	ENST00000377687	NM_001730.3	194	aGc/aCc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456247	32456247	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0087994-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			272	185	534	0	ENST00000332351.3:c.645G>C	p.Gln215His	p.Q215H	ENST00000332351	NM_024426.4	215	caG/caC																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25457242	25457242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147001633		P-0088288-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	25	327	3	ENST00000264709.3:c.2645G>A	p.Arg882His	p.R882H	ENST00000264709	NM_175629.2	882	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0088353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	49	405	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692878	89692882	+	frameshift_variant	Frame_Shift_Del	DEL	CAATT	CAATT	-			P-0088390-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	56	268	0	ENST00000371953.3:c.364_368del	p.Ile122LeufsTer2	p.I122Lfs*2	ENST00000371953	NM_000314.4	121	gCAATT/g																																																																															
JUN	3725	MSKCC	GRCh37	1	59248670	59248670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088390-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			844	46	646	0	ENST00000371222.2:c.73C>T	p.Pro25Ser	p.P25S	ENST00000371222	NM_002228.3	25	Cct/Tct																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061113	38061116	+	frameshift_variant	Frame_Shift_Del	DEL	CTCA	CTCA	-			P-0088390-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	12	624	0	ENST00000250448.2:c.873_876del	p.Glu292AlafsTer28	p.E292Afs*28	ENST00000250448	NM_004496.3	291	ccTGAG/cc																																																																															
ATM	472	MSKCC	GRCh37	11	108158338	108158338	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0088390-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	128	463	0	ENST00000278616.4:c.4005A>T	p.Leu1335Phe	p.L1335F	ENST00000278616	NM_000051.3	1335	ttA/ttT																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061108	38061162	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGC	CGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGC	-			P-0088390-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	28	645	0	ENST00000250448.2:c.827_881del	p.Gly276AlafsTer27	p.G276Afs*27	ENST00000250448	NM_004496.3	276	gGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGCGGCCCTGAGAGCCGc/gc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061140	38061164	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCTTCCGCTCCCGCCCCCGCCG	CCCGCTTCCGCTCCCGCCCCCGCCG	-			P-0088390-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	44	644	0	ENST00000250448.2:c.825_849del	p.Gly276AlafsTer37	p.G276Afs*37	ENST00000250448	NM_004496.3	275	ggCGGCGGGGGCGGGAGCGGAAGCGGG/gg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458578	120458578	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148759277		P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	133	680	1	ENST00000256646.2:c.6767G>A	p.Arg2256His	p.R2256H	ENST00000256646	NM_024408.3	2256	cGc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258894	16258894	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	164	736	1	ENST00000375759.3:c.6164del	p.Pro2055LeufsTer9	p.P2055Lfs*9	ENST00000375759	NM_015001.2	2053	aaC/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	77	422	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27102084	27102084	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	60	555	0	ENST00000324856.7:c.5010G>A	p.Trp1670Ter	p.W1670*	ENST00000324856	NM_006015.4	1670	tgG/tgA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	34	623	1	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																															
STK40	83931	MSKCC	GRCh37	1	36823959	36823959	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	31	545	0	ENST00000373129.3:c.223del	p.Asp75ThrfsTer4	p.D75Tfs*4	ENST00000373129	NM_032017.1	75	Gac/ac																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797418	45797418	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	144	772	0	ENST00000372115.3:c.1059del	p.Arg354GlyfsTer40	p.R354Gfs*40	ENST00000372115	NM_001048171.1	353	ccC/cc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	77	495	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909231		P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	26	155	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108213967	108213967	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876659872		P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	95	445	0	ENST00000278616.4:c.8287C>T	p.Arg2763Ter	p.R2763*	ENST00000278616	NM_000051.3	2763	Cga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112283	115112283	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1018135320		P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	90	633	0	ENST00000257566.3:c.1457C>T	p.Thr486Met	p.T486M	ENST00000257566	NM_016569.3	486	aCg/aTg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	69	647	4	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
POLE	5426	MSKCC	GRCh37	12	133202740	133202740	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs5745068		P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	71	595	1	ENST00000320574.5:c.6494G>A	p.Arg2165His	p.R2165H	ENST00000320574	NM_006231.2	2165	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420204	49420204	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	134	620	0	ENST00000301067.7:c.15545del	p.Gly5182AlafsTer61	p.G5182Afs*61	ENST00000301067	NM_003482.3	5182	gGc/gc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427265	49427266	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC	rs398123707		P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	84	668	0	ENST00000301067.7:c.11220_11222dup	p.Gln3745dup	p.Q3745dup	ENST00000301067	NM_003482.3	3745	caa/caGCAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	41	642	0	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50484048	50484048	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1319486448		P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	150	506	0	ENST00000394963.4:c.898C>T	p.Arg300Cys	p.R300C	ENST00000394963	NM_003076.4	300	Cgc/Tgc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435096	110435096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	88	669	0	ENST00000375856.3:c.3305C>T	p.Thr1102Met	p.T1102M	ENST00000375856	NM_003749.2	1102	aCg/aTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817720	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	65	477	1	ENST00000262367.5:c.3250dup	p.Ile1084AsnfsTer3	p.I1084Nfs*3	ENST00000262367	NM_004380.2	1084	atc/aAtc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843553	3843553	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	54	519	0	ENST00000262367.5:c.1050del	p.Lys350AsnfsTer4	p.K350Nfs*4	ENST00000262367	NM_004380.2	350	aaA/aa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	58	560	1	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	97	456	2	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	107	565	8	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	286	770	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	158	588	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599929	10599929	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	166	554	0	ENST00000171111.5:c.1647del	p.Met550Ter	p.M550*	ENST00000171111	NM_203500.1	549	ccC/cc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031170	11031170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	144	679	0	ENST00000327064.4:c.1255C>T	p.Arg419Trp	p.R419W	ENST00000327064	NM_199141.1	419	Cgg/Tgg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976896	18976896	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1333445130		P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	118	505	0	ENST00000262803.5:c.3281C>T	p.Ala1094Val	p.A1094V	ENST00000262803	NM_002911.3	1094	gCg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223858	36223858	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	145	737	2	ENST00000222270.7:c.6413del	p.Pro2138ArgfsTer15	p.P2138Rfs*15	ENST00000222270	NM_014727.1	2136	ctC/ct																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422128	47422128	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	144	507	0	ENST00000404338.3:c.196C>T	p.Arg66Ter	p.R66*	ENST00000404338	NM_004491.4	66	Cga/Tga																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919734	50919734	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs878854545		P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	50	616	0	ENST00000440232.2:c.2902C>T	p.Arg968Cys	p.R968C	ENST00000440232	NM_002691.3	968	Cgc/Tgc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	83	681	4	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																															
ALK	238	MSKCC	GRCh37	2	29445457	29445457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757580052		P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	32	519	1	ENST00000389048.3:c.3376G>A	p.Ala1126Thr	p.A1126T	ENST00000389048	NM_004304.4	1126	Gcc/Acc																																																																															
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	58	431	0	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																															
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	149	777	2	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200073	128200073	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374457534		P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	142	687	0	ENST00000341105.2:c.1232C>T	p.Ala411Val	p.A411V	ENST00000341105	NM_032638.4	411	gCg/gTg																																																																															
ATR	545	MSKCC	GRCh37	3	142217557	142217557	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	71	374	0	ENST00000350721.4:c.5440del	p.Arg1814GlufsTer10	p.R1814Efs*10	ENST00000350721	NM_001184.3	1814	Aga/ga																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	212	684	1	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468397	89468398	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1467832547		P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	77	431	0	ENST00000336596.2:c.1938dup	p.Glu647ArgfsTer7	p.E647Rfs*7	ENST00000336596	NM_005233.5	644	tca/tcAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521516	187521516	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	21	384	0	ENST00000441802.2:c.11641-2A>G		p.X3881_splice	ENST00000441802	NM_005245.3	3881																																																																																
FAM175A	84142	MSKCC	GRCh37	4	84393376	84393376	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs761514478		P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	90	303	0	ENST00000321945.7:c.281A>G	p.Lys94Arg	p.K94R	ENST00000321945	NM_139076.2	94	aAg/aGg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	107	388	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324114	31324114	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	46	392	0	ENST00000412585.2:c.449T>C	p.Leu150Pro	p.L150P	ENST00000412585	NM_005514.6	150	cTg/cCg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188823	32188823	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs8192585		P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	132	700	0	ENST00000375023.3:c.731C>T	p.Ser244Leu	p.S244L	ENST00000375023	NM_004557.3	244	tCg/tTg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	132	594	2	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	85	400	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874149	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	89	516	1	ENST00000262189.6:c.8389_8390del	p.Lys2797GlyfsTer11	p.K2797Gfs*11	ENST00000262189	NM_170606.2	2797	AAg/g																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	96	782	5	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	88	556	4	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44732910	44732910	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	73	505	0	ENST00000377967.4:c.117del	p.Ser40AlafsTer2	p.S40Afs*2	ENST00000377967	NM_021140.2	38	tCc/tc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156848924	156848924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	29	627	0	ENST00000524377.1:c.1816C>T	p.Pro606Ser	p.P606S	ENST00000524377	NM_002529.3	606	Cct/Tct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+		frameshift_insertion	DNP	CG	CG	CG			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	77	421	1																																																																																						
RAD54L	8438	MSKCC	GRCh37	1	46740346	46740346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	113	559	0	ENST00000371975.4:c.1826G>A	p.Arg609Gln	p.R609Q	ENST00000371975	NM_003579.3	609	cGa/cAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711290	114711290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	107	360	0	ENST00000543371.1:c.305G>A	p.Gly102Asp	p.G102D	ENST00000543371	NM_001198531.1	102	gGc/gAc																																																																															
PGR	5241	MSKCC	GRCh37	11	100999707	100999707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	88	558	0	ENST00000325455.5:c.95C>T	p.Ala32Val	p.A32V	ENST00000325455	NM_001202474.3	32	gCc/gTc																																																																															
YAP1	10413	MSKCC	GRCh37	11	102098208	102098208	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	118	342	0	ENST00000282441.5:c.1172A>G	p.Tyr391Cys	p.Y391C	ENST00000282441	NM_001130145.2	391	tAt/tGt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138876	64138876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	55	445	0	ENST00000334205.4:c.2243C>A	p.Pro748Gln	p.P748Q	ENST00000334205	NM_003942.2	748	cCa/cAa																																																																															
SESN3	143686	MSKCC	GRCh37	11	94918604	94918604	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	77	443	0	ENST00000536441.1:c.578C>A	p.Ala193Asp	p.A193D	ENST00000536441	NM_144665.3	193	gCt/gAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37864620	37864620	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	33	651	0	ENST00000269571.5:c.272T>G	p.Val91Gly	p.V91G	ENST00000269571		91	gTg/gGg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39607480	39607480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	67	357	0	ENST00000262039.4:c.1558G>A	p.Val520Ile	p.V520I	ENST00000262039	NM_002647.2	520	Gta/Ata																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602277	10602277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	137	649	0	ENST00000171111.5:c.1301G>A	p.Cys434Tyr	p.C434Y	ENST00000171111	NM_203500.1	434	tGc/tAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11099995	11099995	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	61	500	0	ENST00000344626.4:c.1121T>C	p.Leu374Pro	p.L374P	ENST00000344626	NM_003072.3	374	cTg/cCg																																																																															
CASP8	841	MSKCC	GRCh37	2	202149556	202149556	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	106	540	0	ENST00000358485.4:c.999del	p.Phe333LeufsTer16	p.F333Lfs*16	ENST00000358485	NM_001080125.1	333	Ttt/tt																																																																															
CASP8	841	MSKCC	GRCh37	2	202149607	202149607	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	108	575	0	ENST00000358485.4:c.1048C>T	p.Gln350Ter	p.Q350*	ENST00000358485	NM_001080125.1	350	Caa/Taa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732985	30732985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	138	557	0	ENST00000359013.4:c.1673G>A	p.Cys558Tyr	p.C558Y	ENST00000359013	NM_001024847.2	558	tGt/tAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1294664	1294665	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	70	605	0	ENST00000310581.5:c.335_336dup	p.Glu113ProfsTer16	p.E113Pfs*16	ENST00000310581	NM_198253.2	112	-/CC																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753397	57753397	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	110	438	0	ENST00000274289.3:c.727A>G	p.Thr243Ala	p.T243A	ENST00000274289	NM_006622.3	243	Acc/Gcc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157525026	157525026	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	125	466	0	ENST00000346085.5:c.4921A>G	p.Met1641Val	p.M1641V	ENST00000346085	NM_020732.3	1641	Atg/Gtg																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239510	31239511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	97	848	0	ENST00000376228.5:c.208dup	p.Glu70GlyfsTer29	p.E70Gfs*29	ENST00000376228	NM_002117.5	70	gag/gGag																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324567	31324568	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	154	793	0	ENST00000412585.2:c.240dup	p.Pro81AlafsTer18	p.P81Afs*18	ENST00000412585	NM_005514.6	80	-/G																																																																															
TAP1	6890	MSKCC	GRCh37	6	32813405	32813405	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	34	555	1	ENST00000354258.4:c.2378A>G	p.Lys793Arg	p.K793R	ENST00000354258	NM_000593.5	793	aAg/aGg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151851095	151851095	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	97	458	0	ENST00000262189.6:c.12276G>T	p.Glu4092Asp	p.E4092D	ENST00000262189	NM_170606.2	4092	gaG/gaT																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741973	145741973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	146	630	0	ENST00000428558.2:c.530C>T	p.Ala177Val	p.A177V	ENST00000428558	NM_004260.3	177	gCa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0088434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	484	619	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778720		P-0088434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	397	634	0	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0088434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	191	312	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175707	112175707	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0088434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	306	600	0	ENST00000257430.4:c.4418del	p.Asn1473MetfsTer34	p.N1473Mfs*34	ENST00000257430	NM_000038.5	1472	gtA/gt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0088434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	179	307	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969968	161969968	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746215864		P-0088434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	219	406	0	ENST00000366898.1:c.1001G>A	p.Arg334His	p.R334H	ENST00000366898	NM_004562.2	334	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519998		P-0049316-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	141	746	0	ENST00000269305.4:c.581T>A	p.Leu194His	p.L194H	ENST00000269305	NM_001126112.2	194	cTt/cAt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049316-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	14	479	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																																																															
APC	324	MSKCC	GRCh37	5	112175918	112175918	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049316-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	81	568	0	ENST00000257430.4:c.4629del	p.Glu1544AsnfsTer21	p.E1544Nfs*21	ENST00000257430	NM_000038.5	1543	Aaa/aa																																																																															
CCNE1	898	MSKCC	GRCh37	19	30311667	30311667	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049316-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	17	415	0	ENST00000262643.3:c.521A>C	p.Asp174Ala	p.D174A	ENST00000262643	NM_001238.2	174	gAc/gCc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212587140	212587142	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-			P-0049316-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	25	472	0	ENST00000342788.4:c.859_861del	p.Ala287del	p.A287del	ENST00000342788	NM_005235.2	287	GCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7579503	7579503	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0086530-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			423	206	797	0	ENST00000269305.4:c.184G>T	p.Glu62Ter	p.E62*	ENST00000269305	NM_001126112.2	62	Gaa/Taa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646811	23646811	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086530-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			729	197	583	0	ENST00000261584.4:c.1056G>C	p.Glu352Asp	p.E352D	ENST00000261584	NM_024675.3	352	gaG/gaC																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43773125	43773125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086530-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			391	84	512	0	ENST00000382044.4:c.467C>T	p.Ser156Leu	p.S156L	ENST00000382044	NM_001141980.1	156	tCa/tTa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52595820	52595820	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0086530-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			415	215	611	0	ENST00000394830.3:c.4095G>A	p.Trp1365Ter	p.W1365*	ENST00000394830	NM_018313.4	1365	tgG/tgA																																																																															
SESN1	27244	MSKCC	GRCh37	6	109309789	109309789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086530-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			390	142	481	0	ENST00000436639.2:c.1526G>A	p.Arg509Lys	p.R509K	ENST00000436639	NM_014454.2	509	aGa/aAa																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88678981	88678981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086530-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			127	55	216	0	ENST00000372037.3:c.921G>C	p.Leu307Phe	p.L307F	ENST00000372037	NM_004329.2	307	ttG/ttC																																																																															
DICER1	23405	MSKCC	GRCh37	14	95556839	95556839	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1220636958		P-0086530-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			350	133	352	0	ENST00000343455.3:c.5765G>A	p.Ser1922Asn	p.S1922N	ENST00000343455	NM_177438.2	1922	aGc/aAc																																																																															
MDM2	4193	MSKCC	GRCh37	12	69230448	69230449	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	TAGGTATATCAAGTTACTGTGTATCAGGCAGGG			P-0086530-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			420	89	356	0	ENST00000462284.1:c.841-3_870dup		p.X281_splice	ENST00000462284	NM_002392.5	281																																																																																
TP53	7157	MSKCC	GRCh37	17	7577507	7577507	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0087889-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			559	89	482	0	ENST00000269305.4:c.774A>T	p.Glu258Asp	p.E258D	ENST00000269305	NM_001126112.2	258	gaA/gaT																																																																															
CDK8	1024	MSKCC	GRCh37	13	26971342	26971342	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087889-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			170	11	385	0	ENST00000381527.3:c.913G>C	p.Asp305His	p.D305H	ENST00000381527	NM_001260.1	305	Gat/Cat																																																																															
CDK8	1024	MSKCC	GRCh37	13	26971320	26971320	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0087889-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			196	11	373	0	ENST00000381527.3:c.892del	p.Glu298LysfsTer24	p.E298Kfs*24	ENST00000381527	NM_001260.1	297	atG/at																																																																															
ABL1	25	MSKCC	GRCh37	9	133759486	133759486	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087889-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			734	130	655	0	ENST00000318560.5:c.1809G>C	p.Leu603Phe	p.L603F	ENST00000318560	NM_005157.4	603	ttG/ttC																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056478	26056478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087889-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			776	43	495	1	ENST00000343677.2:c.179C>A	p.Ala60Asp	p.A60D	ENST00000343677	NM_005319.3	60	gCt/gAt																																																																															
ATR	545	MSKCC	GRCh37	3	142277609	142277609	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0087889-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			272	32	352	0	ENST00000350721.4:c.1742C>G	p.Ser581Ter	p.S581*	ENST00000350721	NM_001184.3	581	tCa/tGa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58734104	58734104	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0087889-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			620	37	509	0	ENST00000305921.3:c.1162G>T	p.Glu388Ter	p.E388*	ENST00000305921	NM_003620.3	388	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0088053-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	197	372	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411489	63411489	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200798538		P-0088053-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	153	459	0	ENST00000330258.3:c.1678C>T	p.Arg560Trp	p.R560W	ENST00000330258	NM_152424.3	560	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0088053-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	120	240	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087483	27087483	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088053-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	172	414	0	ENST00000324856.7:c.2060del	p.Pro687LeufsTer55	p.P687Lfs*55	ENST00000324856	NM_006015.4	686	tCc/tc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101099	27101099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0088291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	148	434	0	ENST00000324856.7:c.4381C>T	p.Arg1461Ter	p.R1461*	ENST00000324856	NM_006015.4	1461	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0088291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	78	288	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098803	178098803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	119	405	0	ENST00000397062.3:c.242G>T	p.Gly81Val	p.G81V	ENST00000397062	NM_006164.4	81	gGt/gTt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0088291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	123	403	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0088291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	50	246	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913396		P-0088291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	128	410	0	ENST00000349496.5:c.95A>T	p.Asp32Val	p.D32V	ENST00000349496	NM_001904.3	32	gAc/gTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0088291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	149	499	1	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0088291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	108	526	0	ENST00000304494.5:c.233dup	p.Thr79HisfsTer41	p.T79Hfs*41	ENST00000304494	NM_000077.4	78	ctc/ctTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27093009	27093018	+	frameshift_variant	Frame_Shift_Del	DEL	AATGAACAAC	AATGAACAAC	-			P-0088291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	113	392	0	ENST00000324856.7:c.2942_2951del	p.Met981ArgfsTer55	p.M981Rfs*55	ENST00000324856	NM_006015.4	980	aaAATGAACAAC/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0088293-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	11	418	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936043	49936043	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088293-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	14	459	0	ENST00000296474.3:c.1627A>G	p.Met543Val	p.M543V	ENST00000296474	NM_002447.2	543	Atg/Gtg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860443	151860443	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0088293-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	21	428	0	ENST00000262189.6:c.10219C>T	p.Gln3407Ter	p.Q3407*	ENST00000262189	NM_170606.2	3407	Cag/Tag																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287893	33287893	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0088329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	401	682	0	ENST00000374542.5:c.1360G>T	p.Glu454Ter	p.E454*	ENST00000374542	NM_001141970.1	454	Gaa/Taa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426745	121426745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	339	699	0	ENST00000257555.6:c.436C>A	p.Gln146Lys	p.Q146K	ENST00000257555		146	Caa/Aaa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163041	47163041	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0088329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	88	503	0	ENST00000409792.3:c.3085G>T	p.Glu1029Ter	p.E1029*	ENST00000409792	NM_014159.6	1029	Gaa/Taa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577257	64577257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0088329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	309	675	0	ENST00000337652.1:c.325G>T	p.Glu109Ter	p.E109*	ENST00000337652	NM_130803.2	109	Gaa/Taa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711983	89711984	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0088329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			79	148	341	0	ENST00000371953.3:c.604dup	p.Thr202AsnfsTer41	p.T202Nfs*41	ENST00000371953	NM_000314.4	201	gaa/gAaa																																																																															
BLM	641	MSKCC	GRCh37	15	91352462	91352462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	106	417	0	ENST00000355112.3:c.3847C>A	p.Gln1283Lys	p.Q1283K	ENST00000355112	NM_000057.2	1283	Cag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0088351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	27	273	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526406	31526406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			715	188	451	0	ENST00000344624.3:c.634C>T	p.Leu212Phe	p.L212F	ENST00000344624		212	Ctc/Ttc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778122	3778122	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			842	80	575	0	ENST00000262367.5:c.6926G>T	p.Gly2309Val	p.G2309V	ENST00000262367	NM_004380.2	2309	gGc/gTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984781	72984781	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0088351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	43	401	0	ENST00000268489.5:c.2803A>C	p.Ile935Leu	p.I935L	ENST00000268489	NM_006885.3	935	Atc/Ctc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217259	7217263	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTC	CTGTC	A			P-0088351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	35	433	0	ENST00000380728.2:c.442_446delinsT	p.Asp148Ter	p.D148*	ENST00000380728		148	GACAGa/Ta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0088354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	33	290	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460446	149460446	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0088354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			716	45	561	0	ENST00000286301.3:c.191G>C	p.Gly64Ala	p.G64A	ENST00000286301	NM_005211.3	64	gGc/gCc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797288	135797289	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0088354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	39	429	0	ENST00000298552.3:c.580dup	p.Met194AsnfsTer24	p.M194Nfs*24	ENST00000298552	NM_001162426.1	194	atg/aAtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0088380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	12	207	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161221	56161221	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781300314		P-0088380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			83	77	312	0	ENST00000399503.3:c.1090C>T	p.Arg364Trp	p.R364W	ENST00000399503	NM_005921.1	364	Cgg/Tgg																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0088380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	103	371	0	ENST00000412916.2:c.165+1del		p.X55_splice	ENST00000412916		55																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151836836	151836837	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0088380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	115	365	0	ENST00000262189.6:c.14383_14384del	p.Thr4795HisfsTer4	p.T4795Hfs*4	ENST00000262189	NM_170606.2	4795	ACc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0088382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			763	47	559	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
CCND2	894	MSKCC	GRCh37	12	4409090	4409090	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142170178		P-0088382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			699	38	479	0	ENST00000261254.3:c.785G>A	p.Arg262His	p.R262H	ENST00000261254	NM_001759.3	262	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0088382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	31	315	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11106935	11107006	+	inframe_deletion	In_Frame_Del	DEL	ACAAGCGCCTGGCCTACCTCTTGCAGCAGACAGACGAGTACGTGGCTAACCTCACGGAGCTGGTGCGGCAGC	ACAAGCGCCTGGCCTACCTCTTGCAGCAGACAGACGAGTACGTGGCTAACCTCACGGAGCTGGTGCGGCAGC	-			P-0088382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			819	30	607	0	ENST00000344626.4:c.1645_1716del	p.Arg549_Lys572del	p.R549_K572del	ENST00000344626	NM_003072.3	547	gACAAGCGCCTGGCCTACCTCTTGCAGCAGACAGACGAGTACGTGGCTAACCTCACGGAGCTGGTGCGGCAGCac/gac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118370123	118370123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	46	432	0	ENST00000534358.1:c.6067C>T	p.His2023Tyr	p.H2023Y	ENST00000534358	NM_005933.3	2023	Cac/Tac																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30102103	30102103	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0088383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	65	307	0	ENST00000331968.5:c.1364A>T	p.Gln455Leu	p.Q455L	ENST00000331968	NM_002742.2	455	cAg/cTg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31437407	31437407	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0088383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	100	366	0	ENST00000344624.3:c.2883-2A>T		p.X961_splice	ENST00000344624		961																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0088383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	44	345	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288574	15288574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	33	250	0	ENST00000263388.2:c.4165C>T	p.Arg1389Cys	p.R1389C	ENST00000263388	NM_000435.2	1389	Cgc/Tgc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426290	47426290	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	70	696	0	ENST00000377045.4:c.707G>T	p.Gly236Val	p.G236V	ENST00000377045	NM_001654.4	236	gGc/gTc																																																																															
INHA	3623	MSKCC	GRCh37	2	220439679	220439679	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	91	758	0	ENST00000243786.2:c.532G>T	p.Val178Leu	p.V178L	ENST00000243786	NM_002191.3	178	Gtg/Ttg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044993	47044993	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	152	630	0	ENST00000329236.7:c.2085del	p.Leu696SerfsTer28	p.L696Sfs*28	ENST00000329236	NM_001204466.1	695	gcG/gc																																																																															
MED12	9968	MSKCC	GRCh37	X	70342433	70342433	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs5981075		P-0088383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	66	540	0	ENST00000374080.3:c.1324G>C	p.Asp442His	p.D442H	ENST00000374080		442	Gat/Cat																																																																															
MSI2	124540	MSKCC	GRCh37	17	55335656	55335656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	36	345	0	ENST00000284073.2:c.211G>A	p.Asp71Asn	p.D71N	ENST00000284073	NM_138962.2	71	Gac/Aac																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412064	63412064	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	138	681	0	ENST00000330258.3:c.1103G>T	p.Gly368Val	p.G368V	ENST00000330258	NM_152424.3	368	gGt/gTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858188	9858188	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	183	611	1	ENST00000330684.3:c.3213C>A	p.His1071Gln	p.H1071Q	ENST00000330684	NM_001134407.1	1071	caC/caA																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288161	21288161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	28	565	0	ENST00000354336.3:c.406G>A	p.Gly136Arg	p.G136R	ENST00000354336	NM_005207.3	136	Ggg/Agg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727523	88727523	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0088383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	102	549	0	ENST00000360948.2:c.256G>T	p.Glu86Ter	p.E86*	ENST00000360948	NM_001012338.2	86	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0088384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	89	304	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105635	11105636	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0088384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			762	117	515	0	ENST00000344626.4:c.1554_1555del	p.Asn519ArgfsTer14	p.N519Rfs*14	ENST00000344626	NM_003072.3	517	aaAGag/aaag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075311	16075311	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0088384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	128	414	0	ENST00000268712.3:c.243-2A>G		p.X81_splice	ENST00000268712	NM_006311.3	81																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32188847	32188847	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			966	189	669	0	ENST00000375023.3:c.707G>T	p.Gly236Val	p.G236V	ENST00000375023	NM_004557.3	236	gGa/gTa																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61305037	61305037	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	136	448	0	ENST00000341074.5:c.1089C>A	p.Phe363Leu	p.F363L	ENST00000341074	NM_002974.2	363	ttC/ttA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517202		P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	55	445	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448592	89448592	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs543425684		P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	66	481	0	ENST00000336596.2:c.1556C>T	p.Thr519Met	p.T519M	ENST00000336596	NM_005233.5	519	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	84	488	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	75	349	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108216596	108216596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587778080		P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	93	391	0	ENST00000278616.4:c.8545C>T	p.Arg2849Ter	p.R2849*	ENST00000278616	NM_000051.3	2849	Cga/Tga																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59821817	59821817	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587780235		P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	65	322	1	ENST00000259008.2:c.2233G>A	p.Ala745Thr	p.A745T	ENST00000259008	NM_032043.2	745	Gca/Aca																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068357	26068357	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	97	248	0	ENST00000435504.4:c.133G>T	p.Glu45Ter	p.E45*	ENST00000435504		45	Gaa/Taa																																																																															
AR	367	MSKCC	GRCh37	X	66942700	66942700	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs200801099		P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			78	34	153	0	ENST00000374690.3:c.2481C>A	p.Phe827Leu	p.F827L	ENST00000374690	NM_000044.3	827	ttC/ttA																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10267124	10267124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751093624		P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	79	390	0	ENST00000340748.4:c.1294G>A	p.Glu432Lys	p.E432K	ENST00000340748		432	Gaa/Aaa																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910563	29910563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			56	30	214	0	ENST00000376809.5:c.103T>C	p.Ser35Pro	p.S35P	ENST00000376809	NM_002116.7	35	Tcc/Ccc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	70	430	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589618	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519838		P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	81	345	0	ENST00000274335.5:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000274335		461	Cga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230813	66230813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	22	410	0	ENST00000273854.3:c.2158G>T	p.Asp720Tyr	p.D720Y	ENST00000273854	NM_004439.5	720	Gat/Tat																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983307	149983307	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	85	419	0	ENST00000253339.5:c.2951T>G	p.Leu984Arg	p.L984R	ENST00000253339		984	cTt/cGt																																																																															
POLE	5426	MSKCC	GRCh37	12	133253151	133253151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	46	374	0	ENST00000320574.5:c.890C>T	p.Ser297Phe	p.S297F	ENST00000320574	NM_006231.2	297	tCc/tTc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134924	41134924	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	61	458	0	ENST00000379561.5:c.704C>A	p.Ser235Tyr	p.S235Y	ENST00000379561	NM_002015.3	235	tCt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112128170	112128170	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768233232		P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	83	319	0	ENST00000257430.4:c.673G>A	p.Glu225Lys	p.E225K	ENST00000257430	NM_000038.5	225	Gaa/Aaa																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733583	85733583	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	63	481	0	ENST00000370580.1:c.429C>A	p.Phe143Leu	p.F143L	ENST00000370580	NM_003921.4	143	ttC/ttA																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552789	106552789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	83	505	1	ENST00000369096.4:c.754G>A	p.Glu252Lys	p.E252K	ENST00000369096	NM_001198.3	252	Gaa/Aaa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	30956904	30956904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	20	390	0	ENST00000375687.4:c.230G>A	p.Arg77Gln	p.R77Q	ENST00000375687	NM_015338.5	77	cGa/cAa																																																																															
POLE	5426	MSKCC	GRCh37	12	133212575	133212575	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	80	475	0	ENST00000320574.5:c.5714T>G	p.Ile1905Ser	p.I1905S	ENST00000320574	NM_006231.2	1905	aTt/aGt																																																																															
MSH3	4437	MSKCC	GRCh37	5	80071530	80071530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	105	312	0	ENST00000265081.6:c.2271G>T	p.Lys757Asn	p.K757N	ENST00000265081	NM_002439.4	757	aaG/aaT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165023	47165023	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1385695873		P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	114	496	0	ENST00000409792.3:c.1103G>A	p.Arg368Gln	p.R368Q	ENST00000409792	NM_014159.6	368	cGa/cAa																																																																															
RB1	5925	MSKCC	GRCh37	13	48955517	48955517	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	69	331	0	ENST00000267163.4:c.1633G>T	p.Glu545Ter	p.E545*	ENST00000267163	NM_000321.2	545	Gaa/Taa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37672011	37672011	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	49	342	0	ENST00000447079.4:c.2796G>T	p.Lys932Asn	p.K932N	ENST00000447079	NM_015083.1	932	aaG/aaT																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849143	156849143	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775191394		P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	81	464	0	ENST00000524377.1:c.2035G>A	p.Asp679Asn	p.D679N	ENST00000524377	NM_002529.3	679	Gac/Aac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910882	114910882	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs572431965		P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	39	438	0	ENST00000543371.1:c.1001C>T	p.Ser334Leu	p.S334L	ENST00000543371	NM_001198531.1	334	tCa/tTa																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112891184	112891184	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369155025		P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	88	420	0	ENST00000351677.2:c.518G>A	p.Arg173His	p.R173H	ENST00000351677	NM_002834.3	173	cGc/cAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117868	70117868	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1407667250		P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	42	522	0	ENST00000245479.2:c.336C>A	p.Phe112Leu	p.F112L	ENST00000245479	NM_000346.3	112	ttC/ttA																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119585438	119585438	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1174225568		P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	49	232	0	ENST00000316626.5:c.947G>A	p.Arg316Gln	p.R316Q	ENST00000316626		316	cGg/cAg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176054983	176054983	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs991566021		P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	164	332	0	ENST00000367669.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000367669	NM_022457.5	357	cGa/cAa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81973652	81973652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	82	430	0	ENST00000359376.3:c.3469G>A	p.Ala1157Thr	p.A1157T	ENST00000359376	NM_002661.3	1157	Gca/Aca																																																																															
REST	5978	MSKCC	GRCh37	4	57796619	57796619	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141001113		P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	77	528	0	ENST00000309042.7:c.1595G>A	p.Gly532Asp	p.G532D	ENST00000309042	NM_005612.4	532	gGt/gAt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245334	46245334	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	81	477	0	ENST00000334344.6:c.3428del	p.Val1143GlyfsTer13	p.V1143Gfs*13	ENST00000334344	NM_152641.2	1143	gTg/gg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168668	56168678	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGTGGATTC	CCTGTGGATTC	-			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	84	469	0	ENST00000399503.3:c.1524_1534del	p.Val509PhefsTer28	p.V509Ffs*28	ENST00000399503	NM_005921.1	508	CCTGTGGATTCc/c																																																																															
SDHB	6390	MSKCC	GRCh37	1	17345438	17345438	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	84	388	0	ENST00000375499.3:c.781A>G	p.Lys261Glu	p.K261E	ENST00000375499	NM_003000.2	261	Aaa/Gaa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28623530	28623530	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	72	399	0	ENST00000241453.7:c.1027A>G	p.Thr343Ala	p.T343A	ENST00000241453	NM_004119.2	343	Acc/Gcc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231802	36231802	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	84	551	0	ENST00000300305.3:c.582A>C	p.Lys194Asn	p.K194N	ENST00000300305		194	aaA/aaC																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30095738	30095738	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	63	276	0	ENST00000331968.5:c.1750T>G	p.Phe584Val	p.F584V	ENST00000331968	NM_002742.2	584	Ttt/Gtt																																																																															
KIT	3815	MSKCC	GRCh37	4	55573296	55573296	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	56	384	0	ENST00000288135.5:c.958A>C	p.Asn320His	p.N320H	ENST00000288135	NM_000222.2	320	Aac/Cac																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245819	41245819	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs397508903		P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	81	436	0	ENST00000357654.3:c.1729G>T	p.Glu577Ter	p.E577*	ENST00000357654	NM_007294.3	577	Gaa/Taa																																																																															
SESN3	143686	MSKCC	GRCh37	11	94911989	94911989	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	40	294	0	ENST00000536441.1:c.941T>C	p.Phe314Ser	p.F314S	ENST00000536441	NM_144665.3	314	tTt/tCt																																																																															
HGF	3082	MSKCC	GRCh37	7	81381578	81381578	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	64	356	0	ENST00000222390.5:c.483C>A	p.Ser161Arg	p.S161R	ENST00000222390	NM_000601.4	161	agC/agA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549401	187549401	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	99	469	0	ENST00000441802.2:c.4717G>T	p.Glu1573Ter	p.E1573*	ENST00000441802	NM_005245.3	1573	Gaa/Taa																																																																															
ATR	545	MSKCC	GRCh37	3	142281759	142281759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	77	438	0	ENST00000350721.4:c.485G>T	p.Arg162Ile	p.R162I	ENST00000350721	NM_001184.3	162	aGa/aTa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162622259	162622259	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	66	426	0	ENST00000366898.1:c.438T>G	p.Phe146Leu	p.F146L	ENST00000366898	NM_004562.2	146	ttT/ttG																																																																															
EZH2	2146	MSKCC	GRCh37	7	148514425	148514425	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	20	385	0	ENST00000320356.2:c.1299G>T	p.Glu433Asp	p.E433D	ENST00000320356	NM_004456.4	433	gaG/gaT																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001508	150001508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	70	408	0	ENST00000253339.5:c.2096A>G	p.Lys699Arg	p.K699R	ENST00000253339		699	aAa/aGa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99250827	99250827	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	65	448	0	ENST00000268035.6:c.131del	p.Gln44ArgfsTer3	p.Q44Rfs*3	ENST00000268035	NM_000875.3	44	cAg/cg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812175	212812175	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0088128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	65	402	0	ENST00000342788.4:c.401T>G	p.Leu134Arg	p.L134R	ENST00000342788	NM_005235.2	134	cTt/cGt																																																																															
PAK1	5058	MSKCC	GRCh37	11	77047283	77047283	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs972319037		P-0088317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	119	550	0	ENST00000356341.3:c.1261C>T	p.Arg421Trp	p.R421W	ENST00000356341	NM_002576.4	421	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0088317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	68	333	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348493	89348493	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1489486003		P-0088317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			815	329	607	0	ENST00000301030.4:c.4457G>A	p.Arg1486Gln	p.R1486Q	ENST00000301030	NM_001256183.1	1486	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0088317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	146	660	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222867	5222867	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1193352037		P-0088317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	119	595	0	ENST00000357368.4:c.2936G>A	p.Arg979Gln	p.R979Q	ENST00000357368	NM_002850.3	979	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0088317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	92	257	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836311	151836311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	168	494	0	ENST00000262189.6:c.14494G>A	p.Asp4832Asn	p.D4832N	ENST00000262189	NM_170606.2	4832	Gac/Aac																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150923412	150923412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			727	39	567	0	ENST00000271640.5:c.2059G>A	p.Glu687Lys	p.E687K	ENST00000271640	NM_001145415.1	687	Gaa/Aaa																																																																															
STK40	83931	MSKCC	GRCh37	1	36807451	36807451	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200773119		P-0088317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	138	527	0	ENST00000373129.3:c.1213G>A	p.Gly405Ser	p.G405S	ENST00000373129	NM_032017.1	405	Ggc/Agc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56494904	56494904	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			799	181	537	0	ENST00000267101.3:c.3261G>T	p.Met1087Ile	p.M1087I	ENST00000267101	NM_001982.3	1087	atG/atT																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24145499	24145499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	124	559	0	ENST00000263121.7:c.518C>T	p.Pro173Leu	p.P173L	ENST00000263121	NM_003073.3	173	cCa/cTa																																																																															
APC	324	MSKCC	GRCh37	5	112174329	112174330	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0088317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	138	587	0	ENST00000257430.4:c.3040_3041del	p.Met1014GlyfsTer2	p.M1014Gfs*2	ENST00000257430	NM_000038.5	1013	cAT/c																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	145	386	2	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	26	208	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	40	478	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	267	641	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	32	332	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	42	299	1	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
APC	324	MSKCC	GRCh37	5	112154942	112154942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779780		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	56	446	0	ENST00000257430.4:c.1213C>T	p.Arg405Ter	p.R405*	ENST00000257430	NM_000038.5	405	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	80	358	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223419	53223419	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370060257		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	66	474	0	ENST00000375401.3:c.3940C>T	p.Arg1314Trp	p.R1314W	ENST00000375401	NM_004187.3	1314	Cgg/Tgg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	183	426	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
TERT	7015	MSKCC	GRCh37	5	1293664	1293664	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111952055		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	61	552	0	ENST00000310581.5:c.1337G>A	p.Arg446His	p.R446H	ENST00000310581	NM_198253.2	446	cGt/cAt																																																																															
IDH2	3418	MSKCC	GRCh37	15	90630791	90630791	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1227626398		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	243	462	0	ENST00000330062.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000330062	NM_002168.2	232	gCg/gTg																																																																															
RET	5979	MSKCC	GRCh37	10	43620335	43620335	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs17158558		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	45	359	0	ENST00000355710.3:c.2944C>T	p.Arg982Cys	p.R982C	ENST00000355710	NM_020975.4	982	Cgc/Tgc																																																																															
TET1	80312	MSKCC	GRCh37	10	70426931	70426931	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144272090		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	111	466	0	ENST00000373644.4:c.4591G>A	p.Asp1531Asn	p.D1531N	ENST00000373644	NM_030625.2	1531	Gac/Aac																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154242	2154242	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1388678905		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	82	564	0	ENST00000434045.2:c.686del	p.Pro229GlnfsTer27	p.P229Qfs*27	ENST00000434045	NM_001127598.1	229	cCa/ca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272337	15272337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs776990686		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	85	626	5	ENST00000263388.2:c.6102del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2034	ccC/cc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	84	346	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	96	448	3	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37042482	37042482	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587778998		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	45	307	0	ENST00000231790.2:c.244A>G	p.Thr82Ala	p.T82A	ENST00000231790	NM_000249.3	82	Act/Gct																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902164	50902164	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3218773		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	98	458	0	ENST00000440232.2:c.56G>A	p.Arg19His	p.R19H	ENST00000440232	NM_002691.3	19	cGt/cAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89337296	89337296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	91	260	2	ENST00000301030.4:c.7735C>T	p.Arg2579Cys	p.R2579C	ENST00000301030	NM_001256183.1	2579	Cgc/Tgc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497358	149497358	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35731372		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	162	475	0	ENST00000261799.4:c.2960G>A	p.Arg987Gln	p.R987Q	ENST00000261799	NM_002609.3	987	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920438	114920438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	65	406	0	ENST00000543371.1:c.1379G>A	p.Cys460Tyr	p.C460Y	ENST00000543371	NM_001198531.1	460	tGc/tAc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246061	41246061	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28897677		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	104	386	0	ENST00000357654.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000357654	NM_007294.3	496	cGt/cAt																																																																															
CBL	867	MSKCC	GRCh37	11	119144724	119144724	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1253824253		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	64	319	0	ENST00000264033.4:c.737G>A	p.Arg246Gln	p.R246Q	ENST00000264033	NM_005188.3	246	cGa/cAa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	154	459	1	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	83	466	2	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900244	101900246	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	30	368	0	ENST00000374994.4:c.683_685del	p.Glu228del	p.E228del	ENST00000374994	NM_004612.2	226	ggAGAa/gga																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	60	449	0	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49418624	49418624	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1459471282		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			891	55	459	0	ENST00000301067.7:c.15890C>T	p.Thr5297Met	p.T5297M	ENST00000301067	NM_003482.3	5297	aCg/aTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11186697	11186697	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	96	418	1	ENST00000361445.4:c.6508del	p.Arg2170GlyfsTer3	p.R2170Gfs*3	ENST00000361445	NM_004958.3	2170	Cgg/gg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753149	42753151	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs199960550		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	146	628	4	ENST00000222329.4:c.1113_1115del	p.Ser373del	p.S373del	ENST00000222329	NM_006494.2	371	tcTTCc/tcc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808391	1808391	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17882190		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	204	653	2	ENST00000260795.2:c.2149G>A	p.Ala717Thr	p.A717T	ENST00000260795		717	Gcc/Acc																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518493	69518493	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	90	382	0	ENST00000294312.3:c.152G>C	p.Gly51Ala	p.G51A	ENST00000294312	NM_005117.2	51	gGc/gCc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784049	9784051	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	166	520	0	ENST00000377346.4:c.2620_2622del	p.Glu874del	p.E874del	ENST00000377346	NM_005026.3	873	GAG/-																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443787	49443787	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1267389918		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			708	132	556	0	ENST00000301067.7:c.3584C>T	p.Thr1195Ile	p.T1195I	ENST00000301067	NM_003482.3	1195	aCa/aTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151875048	151875048	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs531219111		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	61	289	1	ENST00000262189.6:c.7490G>A	p.Arg2497His	p.R2497H	ENST00000262189	NM_170606.2	2497	cGc/cAc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123184041	123184041	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1375196362		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	14	298	0	ENST00000218089.9:c.899C>T	p.Ala300Val	p.A300V	ENST00000218089	NM_001042749.1	300	gCg/gTg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513247	44513247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	121	276	0	ENST00000291552.4:c.688C>T	p.Arg230Trp	p.R230W	ENST00000291552	NM_006758.2	230	Cgg/Tgg																																																																															
IDH2	3418	MSKCC	GRCh37	15	90645619	90645619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	132	343	0	ENST00000330062.3:c.4G>A	p.Ala2Thr	p.A2T	ENST00000330062	NM_002168.2	2	Gcc/Acc																																																																															
EP300	2033	MSKCC	GRCh37	22	41566555	41566555	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1445337631		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	137	329	0	ENST00000263253.7:c.4432C>T	p.Arg1478Cys	p.R1478C	ENST00000263253	NM_001429.3	1478	Cgt/Tgt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633577	69633577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	97	412	0	ENST00000334134.2:c.125C>T	p.Ala42Val	p.A42V	ENST00000334134	NM_005247.2	42	gCg/gTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141492	11141492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	158	541	0	ENST00000344626.4:c.3469C>T	p.Arg1157Trp	p.R1157W	ENST00000344626	NM_003072.3	1157	Cgg/Tgg																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944965	31944965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	75	462	0	ENST00000340398.3:c.136G>A	p.Val46Met	p.V46M	ENST00000340398	NM_001013699.2	46	Gtg/Atg																																																																															
POT1	25913	MSKCC	GRCh37	7	124503600	124503600	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1385542313		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	23	385	0	ENST00000357628.3:c.350G>A	p.Arg117His	p.R117H	ENST00000357628	NM_015450.2	117	cGc/cAc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94209523	94209523	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	24	268	0	ENST00000323929.3:c.591del	p.Val198Ter	p.V198*	ENST00000323929	NM_005591.3	197	aaA/aa																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225387	26225387	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776406667		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1067	188	437	1	ENST00000360408.1:c.5C>T	p.Ala2Val	p.A2V	ENST00000360408	NM_003532.2	2	gCg/gTg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243708813	243708813	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			60	15	214	0	ENST00000263826.5:c.1250del	p.Lys417SerfsTer10	p.K417Sfs*10	ENST00000263826	NM_005465.4	417	aAg/ag																																																																															
TEK	7010	MSKCC	GRCh37	9	27212719	27212719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	49	422	0	ENST00000380036.4:c.2701G>A	p.Ala901Thr	p.A901T	ENST00000380036	NM_000459.3	901	Gcc/Acc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138128	64138128	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764701644		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	184	525	0	ENST00000334205.4:c.2051C>T	p.Pro684Leu	p.P684L	ENST00000334205	NM_003942.2	684	cCg/cTg																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544465	86544465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	71	548	0	ENST00000262426.4:c.290G>A	p.Arg97His	p.R97H	ENST00000262426	NM_001451.2	97	cGc/cAc																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544872	86544872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	69	510	1	ENST00000262426.4:c.697G>A	p.Ala233Thr	p.A233T	ENST00000262426	NM_001451.2	233	Gcc/Acc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739016	145739017	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	175	588	0	ENST00000428558.2:c.2138_2139del	p.Thr713ArgfsTer95	p.T713Rfs*95	ENST00000428558	NM_004260.3	713	aCA/a																																																																															
MLH1	4292	MSKCC	GRCh37	3	37092024	37092025	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	57	353	0	ENST00000231790.2:c.2154_2155del	p.Ile719CysfsTer3	p.I719Cfs*3	ENST00000231790	NM_000249.3	717	gaACac/gaac																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222550	6222550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1052925356		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	137	505	0	ENST00000252674.7:c.692G>A	p.Arg231Gln	p.R231Q	ENST00000252674	NM_005934.3	231	cGg/cAg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59770805	59770805	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	37	308	0	ENST00000259008.2:c.2561G>T	p.Ser854Ile	p.S854I	ENST00000259008	NM_032043.2	854	aGt/aTt																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38787115	38787115	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	101	372	0	ENST00000348513.6:c.878A>C	p.Glu293Ala	p.E293A	ENST00000348513	NM_003079.4	293	gAg/gCg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099005	27099005	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			741	222	520	0	ENST00000324856.7:c.3421A>G	p.Met1141Val	p.M1141V	ENST00000324856	NM_006015.4	1141	Atg/Gtg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11316155	11316155	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	123	435	0	ENST00000361445.4:c.599A>G	p.Asp200Gly	p.D200G	ENST00000361445	NM_004958.3	200	gAc/gGc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438260	56438260	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	199	499	0	ENST00000407977.2:c.733A>G	p.Thr245Ala	p.T245A	ENST00000407977		245	Acc/Gcc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40364033	40364033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	76	207	0	ENST00000293328.3:c.1649G>A	p.Gly550Asp	p.G550D	ENST00000293328	NM_012448.3	550	gGc/gAc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46740261	46740261	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	172	418	0	ENST00000371975.4:c.1741A>G	p.Asn581Asp	p.N581D	ENST00000371975	NM_003579.3	581	Aat/Gat																																																																															
TERT	7015	MSKCC	GRCh37	5	1295656	1295656	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	74	653	1				ENST00000310581	NM_198253.2																																																																																	
TAP1	6890	MSKCC	GRCh37	6	32818120	32818120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	120	454	0	ENST00000354258.4:c.1405G>A	p.Ala469Thr	p.A469T	ENST00000354258	NM_000593.5	469	Gca/Aca																																																																															
EED	8726	MSKCC	GRCh37	11	85977234	85977234	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	17	225	0	ENST00000263360.6:c.836A>C	p.Asp279Ala	p.D279A	ENST00000263360	NM_003797.3	279	gAt/gCt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1632067	1632068	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	175	569	0	ENST00000344749.5:c.267_268del	p.Ser90IlefsTer14	p.S90Ifs*14	ENST00000344749	NM_001136139.2	89	tcTTca/tcca																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594846	47594846	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757481355		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	207	610	0	ENST00000395288.2:c.1193G>A	p.Arg398Gln	p.R398Q	ENST00000395288	NM_016506.5	398	cGa/cAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420974	49420976	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	103	355	0	ENST00000301067.7:c.14773_14775del	p.Pro4925del	p.P4925del	ENST00000301067	NM_003482.3	4925	CCT/-																																																																															
AXIN1	8312	MSKCC	GRCh37	16	364598	364598	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377639730		P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	175	422	0	ENST00000262320.3:c.964G>A	p.Glu322Lys	p.E322K	ENST00000262320	NM_003502.3	322	Gag/Aag																																																																															
MGA	23269	MSKCC	GRCh37	15	42041688	42041688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	38	493	0	ENST00000219905.7:c.5883G>T	p.Gln1961His	p.Q1961H	ENST00000219905	NM_001164273.1	1961	caG/caT																																																																															
SPEN	23013	MSKCC	GRCh37	1	16242773	16242773	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	102	346	2	ENST00000375759.3:c.1394T>C	p.Val465Ala	p.V465A	ENST00000375759	NM_015001.2	465	gTg/gCg																																																																															
GNA11	2767	MSKCC	GRCh37	19	3115039	3115039	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	193	514	0	ENST00000078429.4:c.574T>C	p.Tyr192His	p.Y192H	ENST00000078429	NM_002067.2	192	Tac/Cac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539210	187539210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	158	521	0	ENST00000441802.2:c.8530G>A	p.Val2844Ile	p.V2844I	ENST00000441802	NM_005245.3	2844	Gtt/Att																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955108	17955108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56384680		P-0087475-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	208	473	0	ENST00000458235.1:c.119G>A	p.Arg40His	p.R40H	ENST00000458235	NM_000215.3	40	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579408	7579460	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTG	CAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTG	-			P-0087475-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			233	201	605	0	ENST00000269305.4:c.227_279del	p.Ala76ValfsTer55	p.A76Vfs*55	ENST00000269305	NM_001126112.2	76	gCACCAGCAGCTCCTACACCGGCGGCCCCTGCACCAGCCCCCTCCTGGCCCCTG/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0087475-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			246	106	333	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SYK	6850	MSKCC	GRCh37	9	93607822	93607837	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAAGAATCTGAGCA	GGGAAGAATCTGAGCA	-			P-0087475-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			327	156	389	0	ENST00000375746.1:c.524_539del	p.Arg175GlnfsTer4	p.R175Qfs*4	ENST00000375746	NM_001174167.1	175	cGGGAAGAATCTGAGCAa/ca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16263779	16263779	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087475-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			410	109	536	0	ENST00000375759.3:c.10148G>T	p.Ser3383Ile	p.S3383I	ENST00000375759	NM_015001.2	3383	aGc/aTc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435719	56435719	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0087475-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			185	221	511	0	ENST00000407977.2:c.1418del	p.Gly473AlafsTer29	p.G473Afs*29	ENST00000407977		473	gGc/gc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158636967	158636967	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087475-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			383	324	511	0	ENST00000263640.3:c.213C>G	p.Phe71Leu	p.F71L	ENST00000263640	NM_001105.4	71	ttC/ttG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0088104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	429	516	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223017	5223017	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1313647555		P-0088104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	150	462	1	ENST00000357368.4:c.2786G>A	p.Arg929His	p.R929H	ENST00000357368	NM_002850.3	929	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0088104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	217	576	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120135	70120136	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0088104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	443	451	2	ENST00000245479.2:c.1141_1142dup	p.Leu382ArgfsTer2	p.L382Rfs*2	ENST00000245479	NM_000346.3	379	-/CA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591926	48591926	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0088104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			89	191	477	1	ENST00000342988.3:c.1091del	p.Leu364TrpfsTer20	p.L364Wfs*20	ENST00000342988	NM_005359.5	363	tgT/tg																																																																															
APC	324	MSKCC	GRCh37	5	112154964	112154964	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	173	461	1	ENST00000257430.4:c.1235A>G	p.Gln412Arg	p.Q412R	ENST00000257430	NM_000038.5	412	cAg/cGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs80338963		P-0088106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	28	508	0	ENST00000342988.3:c.1081C>G	p.Arg361Gly	p.R361G	ENST00000342988	NM_005359.5	361	Cgc/Ggc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204753	128204753	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769473824		P-0088106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	88	473	0	ENST00000341105.2:c.688C>T	p.Arg230Cys	p.R230C	ENST00000341105	NM_032638.4	230	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0088106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	54	328	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391196	89391196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	83	392	0	ENST00000336596.2:c.1262C>T	p.Pro421Leu	p.P421L	ENST00000336596	NM_005233.5	421	cCa/cTa																																																																															
CTR9	9646	MSKCC	GRCh37	11	10772961	10772961	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0088106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	76	275	0	ENST00000361367.2:c.2T>A	p.Met1?	p.M1?	ENST00000361367	NM_014633.3	1	aTg/aAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207069	1207070	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0088106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	107	552	0	ENST00000326873.7:c.157_158insTC	p.Asp53ValfsTer12	p.D53Vfs*12	ENST00000326873	NM_000455.4	53	gac/gTCac																																																																															
ATM	472	MSKCC	GRCh37	11	108150294	108150294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	47	388	0	ENST00000278616.4:c.3361G>A	p.Glu1121Lys	p.E1121K	ENST00000278616	NM_000051.3	1121	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0088132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	13	315	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519976		P-0088132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	19	455	0	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0088137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	10	350	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0088141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	149	382	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
APC	324	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0088141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	319	426	2	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs985033810		P-0088141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	153	356	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18650583	18650583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	200	407	0	ENST00000266497.5:c.2794G>A	p.Val932Ile	p.V932I	ENST00000266497		932	Gtt/Att																																																																															
PREX2	80243	MSKCC	GRCh37	8	69009298	69009298	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	110	350	0	ENST00000288368.4:c.2415G>T	p.Lys805Asn	p.K805N	ENST00000288368	NM_024870.2	805	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0088142-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	190	552	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829356	72829356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088142-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	62	450	0	ENST00000268489.5:c.7225C>T	p.Leu2409Phe	p.L2409F	ENST00000268489	NM_006885.3	2409	Ctt/Ttt																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47599341	47599341	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0088142-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	80	485	0	ENST00000395288.2:c.211C>T	p.Arg71Ter	p.R71*	ENST00000395288	NM_016506.5	71	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858034	9858034	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0088142-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	74	509	0	ENST00000330684.3:c.3367G>T	p.Glu1123Ter	p.E1123*	ENST00000330684	NM_001134407.1	1123	Gag/Tag																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176132125	176132125	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0088142-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	43	289	0	ENST00000367669.3:c.643-1G>C		p.X215_splice	ENST00000367669	NM_022457.5	215																																																																																
APC	324	MSKCC	GRCh37	5	112137080	112137080	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0088142-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	115	273	0	ENST00000257430.4:c.834G>C	p.Gln278His	p.Q278H	ENST00000257430	NM_000038.5	278	caG/caC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877930	151877930	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088142-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	148	509	0	ENST00000262189.6:c.7015A>G	p.Asn2339Asp	p.N2339D	ENST00000262189	NM_170606.2	2339	Aac/Gac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390816	139390816	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1292613938		P-0088143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	117	496	0	ENST00000277541.6:c.7375C>T	p.Gln2459Ter	p.Q2459*	ENST00000277541	NM_017617.3	2459	Cag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47058633	47058633	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1210400257		P-0088143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	196	402	0	ENST00000409792.3:c.7645C>T	p.Gln2549Ter	p.Q2549*	ENST00000409792	NM_014159.6	2549	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949069	151949069	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	154	337	0	ENST00000262189.6:c.1576del	p.Arg526ValfsTer10	p.R526Vfs*10	ENST00000262189	NM_170606.2	526	Cgt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0088173-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	272	566	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0088173-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	76	439	1	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0088173-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	77	513	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
KDR	3791	MSKCC	GRCh37	4	55964358	55964358	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0088173-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	87	494	0	ENST00000263923.4:c.2455C>T	p.Arg819Ter	p.R819*	ENST00000263923	NM_002253.2	819	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0088173-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	49	329	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609845	81609845	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0088173-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	135	680	0	ENST00000298171.2:c.1443C>G	p.Tyr481Ter	p.Y481*	ENST00000298171	NM_000369.2	481	taC/taG																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185184691	185184691	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088173-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	256	558	0	ENST00000265026.3:c.1583C>A	p.Ala528Asp	p.A528D	ENST00000265026	NM_004721.4	528	gCc/gAc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068890-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			211	189	373	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0068890-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			43	591	409	0	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41408878	41408878	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068890-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	410	318	0	ENST00000373198.4:c.548G>T	p.Arg183Leu	p.R183L	ENST00000373198	NM_133170.3	183	cGg/cTg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703514	47703514	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs763690339		P-0068890-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			187	828	354	0	ENST00000233146.2:c.2014A>G	p.Met672Val	p.M672V	ENST00000233146	NM_000251.2	672	Atg/Gtg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30133047	30133047	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs765126230		P-0068890-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			207	350	281	0	ENST00000331968.5:c.554A>G	p.His185Arg	p.H185R	ENST00000331968	NM_002742.2	185	cAt/cGt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143043290	143043290	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068890-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	222	242	0	ENST00000262992.4:c.2126C>A	p.Thr709Lys	p.T709K	ENST00000262992	NM_001101669.1	709	aCa/aAa																																																																															
FH	2271	MSKCC	GRCh37	1	241671974	241671974	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068890-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			25	312	246	0	ENST00000366560.3:c.667A>G	p.Lys223Glu	p.K223E	ENST00000366560	NM_000143.3	223	Aaa/Gaa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670252	134670252	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068890-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			903	484	339	0	ENST00000398015.3:c.163A>T	p.Ile55Phe	p.I55F	ENST00000398015	NM_004441.4	55	Atc/Ttc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099303	4099303	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068890-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			682	333	388	0	ENST00000262948.5:c.815C>G	p.Ala272Gly	p.A272G	ENST00000262948	NM_030662.3	272	gCc/gGc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986770	36986770	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068890-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	640	409	0	ENST00000354822.5:c.919C>G	p.Pro307Ala	p.P307A	ENST00000354822	NM_001079668.2	307	Ccg/Gcg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518306	187518306	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068890-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			23	482	323	0	ENST00000441802.2:c.12388G>T	p.Glu4130Ter	p.E4130*	ENST00000441802	NM_005245.3	4130	Gag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653795	89653795	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068890-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			19	184	241	0	ENST00000371953.3:c.93C>A	p.Asn31Lys	p.N31K	ENST00000371953	NM_000314.4	31	aaC/aaA																																																																															
PREX2	80243	MSKCC	GRCh37	8	68989700	68989700	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068890-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			356	352	327	0	ENST00000288368.4:c.1638C>G	p.His546Gln	p.H546Q	ENST00000288368	NM_024870.2	546	caC/caG																																																																															
AXL	558	MSKCC	GRCh37	19	41748824	41748824	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068890-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			298	549	363	1	ENST00000301178.4:c.1349G>T	p.Trp450Leu	p.W450L	ENST00000301178	NM_021913.4	450	tGg/tTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713411	40713413	+	frameshift_variant	Frame_Shift_Del	DEL	GGA	GGA	T			P-0068890-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			697	276	440	0	ENST00000373198.4:c.4102_4104delinsA	p.Ser1368LysfsTer19	p.S1368Kfs*19	ENST00000373198	NM_133170.3	1368	TCC/A																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844417	156844417	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			936	176	736	0	ENST00000524377.1:c.1250G>T	p.Gly417Val	p.G417V	ENST00000524377	NM_002529.3	417	gGg/gTg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849048	156849048	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			839	69	601	0	ENST00000524377.1:c.1940T>G	p.Val647Gly	p.V647G	ENST00000524377	NM_002529.3	647	gTg/gGg																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230459238	230459238	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1448260127		P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			699	130	501	0	ENST00000525115.1:c.1301G>A	p.Arg434Gln	p.R434Q	ENST00000525115		434	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100151	27100151	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			778	183	637	0	ENST00000324856.7:c.3947C>A	p.Ser1316Ter	p.S1316*	ENST00000324856	NM_006015.4	1316	tCg/tAg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29005396	29005396	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			472	90	412	0	ENST00000282397.4:c.865G>C	p.Ala289Pro	p.A289P	ENST00000282397	NM_002019.4	289	Gcc/Ccc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582969	95582969	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			425	132	420	0	ENST00000343455.3:c.1573G>T	p.Gly525Cys	p.G525C	ENST00000343455	NM_177438.2	525	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			696	157	614	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
ARHGAP35	2909	MSKCC	GRCh37	19	47503632	47503632	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			557	201	549	0	ENST00000404338.3:c.4187T>A	p.Leu1396His	p.L1396H	ENST00000404338	NM_004491.4	1396	cTc/cAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41527538	41527538	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			572	100	424	0	ENST00000263253.7:c.1429G>T	p.Val477Leu	p.V477L	ENST00000263253	NM_001429.3	477	Gta/Tta																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540529	187540529	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			768	59	604	0	ENST00000441802.2:c.7211C>A	p.Pro2404His	p.P2404H	ENST00000441802	NM_005245.3	2404	cCt/cAt																																																																															
KDR	3791	MSKCC	GRCh37	4	55948123	55948123	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G	rs1490930990		P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			279	59	241	0	ENST00000263923.4:c.3848G>C	p.Gly1283Ala	p.G1283A	ENST00000263923	NM_002253.2	1283	gGt/gCt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189848	66189848	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			401	83	312	0	ENST00000273854.3:c.3098G>C	p.Gly1033Ala	p.G1033A	ENST00000273854	NM_004439.5	1033	gGa/gCa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217129	66217129	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			483	93	405	0	ENST00000273854.3:c.2486C>A	p.Pro829His	p.P829H	ENST00000273854	NM_004439.5	829	cCc/cAc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871172	35871172	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104893894		P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			463	111	391	0	ENST00000303115.3:c.394C>T	p.Pro132Ser	p.P132S	ENST00000303115	NM_002185.3	132	Cct/Tct																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184105	56184105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			482	75	378	0	ENST00000399503.3:c.4310G>T	p.Cys1437Phe	p.C1437F	ENST00000399503	NM_005921.1	1437	tGt/tTt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382211	152382211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			402	83	397	0	ENST00000206249.3:c.1321C>A	p.Gln441Lys	p.Q441K	ENST00000206249	NM_000125.3	441	Cag/Aag																																																																															
PIM1	5292	MSKCC	GRCh37	6	37139144	37139144	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			746	240	628	0	ENST00000373509.5:c.484G>T	p.Gly162Trp	p.G162W	ENST00000373509	NM_002648.3	162	Ggg/Tgg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2170441	2170441	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			377	54	332	0	ENST00000349721.2:c.4222A>T	p.Ser1408Cys	p.S1408C	ENST00000349721	NM_003070.3	1408	Agt/Tgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971110	21971110	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			640	57	575	0	ENST00000304494.5:c.248A>T	p.His83Leu	p.H83L	ENST00000304494	NM_000077.4	83	cAc/cTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410447	63410447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			380	163	325	0	ENST00000330258.3:c.2720C>A	p.Ser907Tyr	p.S907Y	ENST00000330258	NM_152424.3	907	tCc/tAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413129	63413129	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			268	107	238	0	ENST00000330258.3:c.38G>T	p.Gly13Val	p.G13V	ENST00000330258	NM_152424.3	13	gGa/gTa																																																																															
ATRX	546	MSKCC	GRCh37	X	76937989	76937989	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			250	46	270	0	ENST00000373344.5:c.2759G>T	p.Gly920Val	p.G920V	ENST00000373344	NM_000489.3	920	gGt/gTt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261893	16261893	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			788	66	625	0	ENST00000375759.3:c.9158A>G	p.Asn3053Ser	p.N3053S	ENST00000375759	NM_015001.2	3053	aAc/aGc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176118142	176118142	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			231	25	285	0	ENST00000367669.3:c.831G>T	p.Glu277Asp	p.E277D	ENST00000367669	NM_022457.5	277	gaG/gaT																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350027	89350027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			931	67	655	0	ENST00000301030.4:c.2923G>A	p.Glu975Lys	p.E975K	ENST00000301030	NM_001256183.1	975	Gag/Aag																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736161	204736161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076182-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			571	45	449	0	ENST00000302823.3:c.518G>T	p.Gly173Val	p.G173V	ENST00000302823	NM_005214.4	173	gGg/gTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249012	55249013	+	protein_altering_variant	In_Frame_Ins	INS	CA	CA	TGGCC			P-0086585-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			469	80	405	0	ENST00000275493.2:c.2310_2311delinsTGGCC	p.Asn771delinsGlyHis	p.N771delinsGH	ENST00000275493	NM_005228.3	770	gaCAac/gaTGGCCac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0086654-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			240	134	203	3	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0086654-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			292	259	379	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216388	2216388	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753135719		P-0086654-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			853	186	513	0	ENST00000398665.3:c.2032G>A	p.Ala678Thr	p.A678T	ENST00000398665	NM_032482.2	678	Gcc/Acc																																																																															
ALB	213	MSKCC	GRCh37	4	74277724	74277724	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs75002628		P-0086654-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			206	181	305	0	ENST00000295897.4:c.725G>A	p.Arg242His	p.R242H	ENST00000295897	NM_000477.5	242	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0086654-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			245	49	192	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0086654-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	261	380	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933460	39933463	+	frameshift_variant	Frame_Shift_Del	DEL	CTAA	CTAA	-	rs864309702		P-0086654-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			424	210	529	3	ENST00000378444.4:c.1136_1139del	p.Val379AlafsTer62	p.V379Afs*62	ENST00000378444	NM_001123385.1	379	gTTAGc/gc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243777043	243777043	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0086654-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			220	34	186	0	ENST00000263826.5:c.628-2A>C		p.X210_splice	ENST00000263826	NM_005465.4	210																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49448529	49448529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086654-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			700	173	461	2	ENST00000301067.7:c.182G>A	p.Gly61Asp	p.G61D	ENST00000301067	NM_003482.3	61	gGt/gAt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169940	32169940	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086654-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			906	107	418	0	ENST00000375023.3:c.3668T>C	p.Leu1223Pro	p.L1223P	ENST00000375023	NM_004557.3	1223	cTc/cCc																																																																															
ATM	472	MSKCC	GRCh37	11	108200960	108200960	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121434220		P-0088054-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			20	23	335	0	ENST00000278616.4:c.7327C>T	p.Arg2443Ter	p.R2443*	ENST00000278616	NM_000051.3	2443	Cga/Tga																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2214479	2214479	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088054-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	64	398	0	ENST00000398665.3:c.1807del	p.Arg603AlafsTer18	p.R603Afs*18	ENST00000398665	NM_032482.2	603	Cgc/gc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118372543	118372543	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088054-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			70	98	368	1	ENST00000534358.1:c.6479del	p.Pro2160LeufsTer19	p.P2160Lfs*19	ENST00000534358	NM_005933.3	2159	tCc/tc																																																																															
EED	8726	MSKCC	GRCh37	11	85956282	85956282	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088054-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	85	256	0	ENST00000263360.6:c.13del	p.Glu5LysfsTer19	p.E5Kfs*19	ENST00000263360	NM_003797.3	4	aGg/ag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16235920	16235926	+	frameshift_variant	Frame_Shift_Del	DEL	ATGAGCC	ATGAGCC	-			P-0088056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	118	396	0	ENST00000375759.3:c.986_992del	p.Asp329AlafsTer35	p.D329Afs*35	ENST00000375759	NM_015001.2	329	gATGAGCCc/gc																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0088096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	99	494	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0088096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	231	595	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410714	63410714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	81	257	0	ENST00000330258.3:c.2453G>A	p.Gly818Glu	p.G818E	ENST00000330258	NM_152424.3	818	gGg/gAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212238	5212238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	39	599	0	ENST00000357368.4:c.4793G>A	p.Cys1598Tyr	p.C1598Y	ENST00000357368	NM_002850.3	1598	tGc/tAc																																																																															
ALK	238	MSKCC	GRCh37	2	29551273	29551273	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	79	534	0	ENST00000389048.3:c.1357C>A	p.Gln453Lys	p.Q453K	ENST00000389048	NM_004304.4	453	Cag/Aag																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874607	35874607	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0088096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	73	383	0	ENST00000303115.3:c.763C>G	p.Leu255Val	p.L255V	ENST00000303115	NM_002185.3	255	Ctg/Gtg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295593	1295593	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0088096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	189	662	0				ENST00000310581	NM_198253.2																																																																																	
SLX4	84464	MSKCC	GRCh37	16	3639284	3639284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0088096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	118	564	0	ENST00000294008.3:c.4355G>C	p.Ser1452Thr	p.S1452T	ENST00000294008	NM_032444.2	1452	aGc/aCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0088098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	97	568	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
AMER1	139285	MSKCC	GRCh37	X	63411333	63411333	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0088098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	121	659	0	ENST00000330258.3:c.1834G>T	p.Glu612Ter	p.E612*	ENST00000330258	NM_152424.3	612	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0088098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	70	344	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
ABL1	25	MSKCC	GRCh37	9	133759742	133759742	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0088098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	42	555	0	ENST00000318560.5:c.2066del	p.Lys689SerfsTer5	p.K689Sfs*5	ENST00000318560	NM_005157.4	689	Aag/ag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264066389		P-0088149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			53	41	442	1	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540652		P-0088149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	245	397	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374979	45374980	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	TAC			P-0088149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			70	10	405	0	ENST00000262160.6:c.863_864insGTA	p.Glu288_Thr289insTer	p.E288_T289ins*	ENST00000262160	NM_005901.5	288	gaa/gaGTAa																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0088149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	65	358	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942551	71942554	+	frameshift_variant	Frame_Shift_Del	DEL	CAAT	CAAT	-			P-0088149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	28	415	0	ENST00000298229.2:c.1509_1512del	p.Gln503HisfsTer27	p.Q503Hfs*27	ENST00000298229	NM_001567.3	503	CAATca/ca																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118933	70118934	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0088149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	114	621	0	ENST00000245479.2:c.505_506insT	p.His169LeufsTer83	p.H169Lfs*83	ENST00000245479	NM_000346.3	169	cac/cTac																																																																															
GNA11	2767	MSKCC	GRCh37	19	3119324	3119324	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0088149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	35	531	0	ENST00000078429.4:c.856T>G	p.Ser286Ala	p.S286A	ENST00000078429	NM_002067.2	286	Tcg/Gcg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0086145-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			569	76	484	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0086145-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			628	65	490	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457389	67457389	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0086145-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			604	59	515	0	ENST00000327367.4:c.363C>A	p.Cys121Ter	p.C121*	ENST00000327367	NM_005902.3	121	tgC/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0086145-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			345	40	325	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604783	48604790	+	frameshift_variant	Frame_Shift_Del	DEL	CCTAGACG	CCTAGACG	-			P-0086145-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			643	67	459	0	ENST00000342988.3:c.1605_1612del	p.Leu536SerfsTer38	p.L536Sfs*38	ENST00000342988	NM_005359.5	535	ctCCTAGACGaa/ctaa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120072	70120073	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0086145-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			503	32	417	0	ENST00000245479.2:c.1078_1079dup	p.Gln361ArgfsTer23	p.Q361Rfs*23	ENST00000245479	NM_000346.3	358	-/CC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0086681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	97	489	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649861	88649861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	37	204	0	ENST00000372037.3:c.110C>T	p.Ser37Leu	p.S37L	ENST00000372037	NM_004329.2	37	tCa/tTa																																																																															
AKT2	208	MSKCC	GRCh37	19	40741948	40741948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			861	61	681	0	ENST00000392038.2:c.1024G>A	p.Glu342Lys	p.E342K	ENST00000392038	NM_001626.4	342	Gag/Aag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86659189	86659189	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0086681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	23	330	0	ENST00000274376.6:c.1478T>A	p.Leu493Ter	p.L493*	ENST00000274376	NM_002890.2	493	tTa/tAa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133873	38133873	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0086681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			753	48	450	0	ENST00000317025.8:c.4013A>C	p.Lys1338Thr	p.K1338T	ENST00000317025	NM_023034.1	1338	aAa/aCa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591086	67591087	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAAACGTATGTT			P-0086681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	52	394	0	ENST00000274335.5:c.1689_1690insTTCAAACGTATG	p.Met563_Asn564insPheLysArgMet	p.M563_N564insFKRM	ENST00000274335		560	gac/gaCAAACGTATGTTc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231377	46231377	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	91	620	0	ENST00000334344.6:c.1217A>G	p.His406Arg	p.H406R	ENST00000334344	NM_152641.2	406	cAt/cGt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189927	66189927	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777838691		P-0087705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	145	416	0	ENST00000273854.3:c.3019C>T	p.Arg1007Trp	p.R1007W	ENST00000273854	NM_004439.5	1007	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7572933	7572933	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0087705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	190	577	0	ENST00000269305.4:c.1176del	p.Asp393ThrfsTer29	p.D393Tfs*29	ENST00000269305	NM_001126112.2	392	tcA/tc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061319	38061319	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0087705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	205	681	1	ENST00000250448.2:c.670T>A	p.Phe224Ile	p.F224I	ENST00000250448	NM_004496.3	224	Ttc/Atc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0088062-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	68	390	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0088062-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	32	204	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0088062-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	78	334	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
HRAS	3265	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28933406		P-0088065-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	225	561	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108141794	108141799	+	inframe_deletion	In_Frame_Del	DEL	CTAATG	CTAATG	-			P-0088065-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	78	309	0	ENST00000278616.4:c.2844_2849del	p.Met949_Leu950del	p.M949_L950del	ENST00000278616	NM_000051.3	948	CTAATG/-																																																																															
ATM	472	MSKCC	GRCh37	11	108216523	108216524	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0088065-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	64	334	0	ENST00000278616.4:c.8472_8473delinsTT	p.Gln2825Ter	p.Q2825*	ENST00000278616	NM_000051.3	2824	tgCCaa/tgTTaa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807860	3807860	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0088065-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	127	438	0	ENST00000262367.5:c.3559C>T	p.Gln1187Ter	p.Q1187*	ENST00000262367	NM_004380.2	1187	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249019	55249019	+	protein_altering_variant	In_Frame_Ins	INS	C	C	TACAACCCCT			P-0088066-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	84	483	0	ENST00000275493.2:c.2317delinsTACAACCCCT	p.His773delinsTyrAsnProTyr	p.H773delinsYNPY	ENST00000275493	NM_005228.3	773	Cac/TACAACCCCTac																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412119	63412119	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0088066-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	33	546	0	ENST00000330258.3:c.1048A>T	p.Arg350Ter	p.R350*	ENST00000330258	NM_152424.3	350	Aga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108143320	108143320	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0088066-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	76	353	0	ENST00000278616.4:c.3142del	p.Thr1048LeufsTer16	p.T1048Lfs*16	ENST00000278616	NM_000051.3	1047	Aaa/aa																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858033	152858034	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGC			P-0088066-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	177	462	0	ENST00000406277.2:c.579_581dup	p.Leu194dup	p.L194dup	ENST00000406277	NM_152274.4	194	ctc/ctGCTc																																																																															
ATM	472	MSKCC	GRCh37	11	108121743	108121744	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0088066-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	123	395	0	ENST00000278616.4:c.1551_1552del	p.Glu518GlyfsTer2	p.E518Gfs*2	ENST00000278616	NM_000051.3	517	gtTGag/gtag																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0083984-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			513	83	555	1	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287446	46287446	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs774801990		P-0083984-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	101	468	0	ENST00000334344.6:c.5305C>T	p.Arg1769Ter	p.R1769*	ENST00000334344	NM_152641.2	1769	Cga/Tga																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376325	15376325	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs201031470		P-0083984-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			496	39	442	0	ENST00000263377.2:c.689C>G	p.Pro230Arg	p.P230R	ENST00000263377	NM_058243.2	230	cCg/cGg																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51520083	51520083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083984-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			348	66	351	0	ENST00000260433.2:c.344G>A	p.Arg115Gln	p.R115Q	ENST00000260433		115	cGa/cAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29657492	29657492	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083984-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			289	25	359	0	ENST00000358273.4:c.5788T>C	p.Cys1930Arg	p.C1930R	ENST00000358273	NM_001042492.2	1930	Tgt/Cgt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23634391	23634392	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0083984-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			387	57	321	0	ENST00000261584.4:c.2893_2894dup	p.Asn965LysfsTer3	p.N965Kfs*3	ENST00000261584	NM_024675.3	965	aat/aaAAt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572284	64572284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775922507		P-0083984-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			665	73	600	0	ENST00000337652.1:c.1370G>A	p.Arg457Gln	p.R457Q	ENST00000337652	NM_130803.2	457	cGg/cAg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672800	86672800	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764802465		P-0086359-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			631	62	470	0	ENST00000274376.6:c.2287G>A	p.Glu763Lys	p.E763K	ENST00000274376	NM_002890.2	763	Gaa/Aaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11552822		P-0087586-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			103	278	439	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504371	8504371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087586-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			99	181	318	0	ENST00000356435.5:c.1712G>T	p.Arg571Met	p.R571M	ENST00000356435		571	aGg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0087586-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			171	307	465	0	ENST00000269305.4:c.920-2A>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10599994	10599994	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0087586-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			134	302	447	0	ENST00000171111.5:c.1582C>T	p.Gln528Ter	p.Q528*	ENST00000171111	NM_203500.1	528	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710564	114710564	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0087586-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			220	163	354	0	ENST00000543371.1:c.49G>T	p.Glu17Ter	p.E17*	ENST00000543371	NM_001198531.1	17	Gaa/Taa																																																																															
TERT	7015	MSKCC	GRCh37	5	1280370	1280370	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746434205		P-0087586-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			601	149	390	0	ENST00000310581.5:c.1853C>T	p.Thr618Met	p.T618M	ENST00000310581	NM_198253.2	618	aCg/aTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2106756	2106756	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs45517126		P-0087586-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	325	330	0	ENST00000219476.3:c.760G>T	p.Glu254Ter	p.E254*	ENST00000219476	NM_000548.3	254	Gag/Tag																																																																															
LYN	4067	MSKCC	GRCh37	8	56866528	56866528	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087586-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			463	101	383	0	ENST00000519728.1:c.775G>T	p.Gly259Trp	p.G259W	ENST00000519728	NM_002350.3	259	Ggg/Tgg																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733555	85733555	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0087586-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			114	199	365	0	ENST00000370580.1:c.457A>T	p.Met153Leu	p.M153L	ENST00000370580	NM_003921.4	153	Atg/Ttg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411849	63411849	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087586-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			465	143	535	1	ENST00000330258.3:c.1318G>T	p.Asp440Tyr	p.D440Y	ENST00000330258	NM_152424.3	440	Gac/Tac																																																																															
HGF	3082	MSKCC	GRCh37	7	81386539	81386539	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0087586-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			143	51	279	0	ENST00000222390.5:c.448C>T	p.Gln150Ter	p.Q150*	ENST00000222390	NM_000601.4	150	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0088072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	55	387	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0088072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	47	389	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0088072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	65	440	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577578	7577578	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	108	306	0	ENST00000269305.4:c.703A>G	p.Asn235Asp	p.N235D	ENST00000269305	NM_001126112.2	235	Aac/Gac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921567	178921567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	29	290	0	ENST00000263967.3:c.1049A>G	p.Asp350Gly	p.D350G	ENST00000263967	NM_006218.2	350	gAc/gGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100292	27100292	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0088072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	107	444	0	ENST00000324856.7:c.4005-1G>A		p.X1335_splice	ENST00000324856	NM_006015.4	1335																																																																																
PIK3R2	5296	MSKCC	GRCh37	19	18279639	18279639	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781445775		P-0088072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	47	444	0	ENST00000222254.8:c.1912G>A	p.Gly638Ser	p.G638S	ENST00000222254	NM_005027.3	638	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0088072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	107	270	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40710619	40710619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	155	376	0	ENST00000373198.4:c.4232G>T	p.Cys1411Phe	p.C1411F	ENST00000373198	NM_133170.3	1411	tGc/tTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411960	63411960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	121	544	0	ENST00000330258.3:c.1207G>T	p.Asp403Tyr	p.D403Y	ENST00000330258	NM_152424.3	403	Gat/Tat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907461	32907461	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	59	399	0	ENST00000380152.3:c.1846T>C	p.Cys616Arg	p.C616R	ENST00000380152		616	Tgt/Cgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	22	408	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	195	507	1	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429977	78429978	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1200882279		P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	88	465	0	ENST00000370768.2:c.901dup	p.Ile301AsnfsTer4	p.I301Nfs*4	ENST00000370768	NM_003902.3	301	ata/aAta																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	300	442	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543828	212543828	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371593463		P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	144	423	0	ENST00000342788.4:c.1571G>A	p.Arg524His	p.R524H	ENST00000342788	NM_005235.2	524	cGc/cAc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	122	408	1	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																															
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	352	477	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																															
ATRX	546	MSKCC	GRCh37	X	76764089	76764089	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	16	220	0	ENST00000373344.5:c.7219C>T	p.Arg2407Ter	p.R2407*	ENST00000373344	NM_000489.3	2407	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843495	3843495	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	94	534	0	ENST00000262367.5:c.1108C>T	p.Arg370Ter	p.R370*	ENST00000262367	NM_004380.2	370	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	151	362	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831357	72831358	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTG	rs552138038		P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	76	593	1	ENST00000268489.5:c.5221_5223dup	p.Gln1741dup	p.Q1741dup	ENST00000268489	NM_006885.3	1741	-/CAA																																																																															
NSD1	64324	MSKCC	GRCh37	5	176720964	176720964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	58	538	0	ENST00000439151.2:c.6595C>T	p.Arg2199Cys	p.R2199C	ENST00000439151	NM_022455.4	2199	Cgt/Tgt																																																																															
ALK	238	MSKCC	GRCh37	2	29416532	29416532	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	173	643	0	ENST00000389048.3:c.4421del	p.Gly1474AspfsTer3	p.G1474Dfs*3	ENST00000389048	NM_004304.4	1474	gGa/ga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118924	70118926	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			705	218	660	0	ENST00000245479.2:c.499_501del	p.Lys167del	p.K167del	ENST00000245479	NM_000346.3	166	AAG/-																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936083	178936083	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519927		P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	27	200	0	ENST00000263967.3:c.1625A>T	p.Glu542Val	p.E542V	ENST00000263967	NM_006218.2	542	gAa/gTa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2127724	2127724	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397515306		P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	206	557	0	ENST00000219476.3:c.2963G>A	p.Arg988His	p.R988H	ENST00000219476	NM_000548.3	988	cGc/cAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812259	212812259	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs991337964		P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	108	434	0	ENST00000342788.4:c.317G>A	p.Arg106His	p.R106H	ENST00000342788	NM_005235.2	106	cGt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434959	49434959	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	161	635	0	ENST00000301067.7:c.6594del	p.Tyr2199IlefsTer65	p.Y2199Ifs*65	ENST00000301067	NM_003482.3	2198	ccC/cc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807913	3807913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	159	445	0	ENST00000262367.5:c.3506G>A	p.Arg1169His	p.R1169H	ENST00000262367	NM_004380.2	1169	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424512	49424512	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756908474		P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	165	548	0	ENST00000301067.7:c.13711G>A	p.Ala4571Thr	p.A4571T	ENST00000301067	NM_003482.3	4571	Gcc/Acc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287468	46287469	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	94	368	0	ENST00000334344.6:c.5333dup	p.Asn1778LysfsTer4	p.N1778Kfs*4	ENST00000334344	NM_152641.2	1776	tta/ttAa																																																																															
BTK	695	MSKCC	GRCh37	X	100611138	100611138	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868978699		P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	86	222	0	ENST00000308731.7:c.1468C>T	p.Arg490Cys	p.R490C	ENST00000308731	NM_000061.2	490	Cgc/Tgc																																																																															
CD79B	974	MSKCC	GRCh37	17	62006596	62006596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	157	502	0	ENST00000392795.3:c.683G>A	p.Gly228Asp	p.G228D	ENST00000392795	NM_001039933.1	228	gGc/gAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508068	106508068	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755613711		P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	146	436	3	ENST00000359195.3:c.62G>A	p.Arg21Gln	p.R21Q	ENST00000359195	NM_002649.2	21	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	82	317	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	65	480	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174443	11174443	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1284066170		P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	64	379	0	ENST00000361445.4:c.7232A>G	p.Lys2411Arg	p.K2411R	ENST00000361445	NM_004958.3	2411	aAg/aGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581288	48581288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	69	447	0	ENST00000342988.3:c.592C>A	p.Pro198Thr	p.P198T	ENST00000342988	NM_005359.5	198	Cca/Aca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216152	36216153	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	144	565	0	ENST00000222270.7:c.3566dup	p.Leu1190ProfsTer34	p.L1190Pfs*34	ENST00000222270	NM_014727.1	1187	atg/atGg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029452	14029452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	78	513	0	ENST00000311895.7:c.1663C>T	p.His555Tyr	p.H555Y	ENST00000311895	NM_005236.2	555	Cat/Tat																																																																															
ARAF	369	MSKCC	GRCh37	X	47429308	47429308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	173	263	0	ENST00000377045.4:c.1436G>A	p.Arg479His	p.R479H	ENST00000377045	NM_001654.4	479	cGt/cAt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187164	11187164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	138	414	0	ENST00000361445.4:c.6254G>A	p.Cys2085Tyr	p.C2085Y	ENST00000361445	NM_004958.3	2085	tGc/tAc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63976450	63976450	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	68	445	0	ENST00000295900.6:c.1597T>C	p.Tyr533His	p.Y533H	ENST00000295900	NM_000333.3	533	Tat/Cat																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111164	193111164	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	116	491	0	ENST00000367435.3:c.697A>G	p.Thr233Ala	p.T233A	ENST00000367435	NM_024529.4	233	Aca/Gca																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041797	14041797	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	121	517	0	ENST00000311895.7:c.2344A>G	p.Asn782Asp	p.N782D	ENST00000311895	NM_005236.2	782	Aat/Gat																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637379	176637380	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	192	540	0	ENST00000439151.2:c.1980_1981del	p.Asn660LysfsTer4	p.N660Kfs*4	ENST00000439151	NM_022455.4	660	aAC/a																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022681	12022681	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			688	205	691	0	ENST00000396373.4:c.787A>G	p.Thr263Ala	p.T263A	ENST00000396373	NM_001987.4	263	Aca/Gca																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38968128	38968128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	76	315	0	ENST00000357387.3:c.977G>A	p.Gly326Asp	p.G326D	ENST00000357387	NM_152756.3	326	gGt/gAt																																																																															
CTR9	9646	MSKCC	GRCh37	11	10791790	10791791	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0088074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	64	499	0	ENST00000361367.2:c.2147dup	p.Asn716LysfsTer3	p.N716Kfs*3	ENST00000361367	NM_014633.3	715	caa/cAaa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056053	26056067	+	inframe_deletion	In_Frame_Del	DEL	CCTTGGGCTTAGCGG	CCTTGGGCTTAGCGG	-	rs756916945		P-0088078-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	163	468	0	ENST00000343677.2:c.590_604del	p.Ala197_Lys201del	p.A197_K201del	ENST00000343677	NM_005319.3	197	gCCGCTAAGCCCAAGGtt/gtt																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61305317	61305317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088078-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			91	25	78	0	ENST00000341074.5:c.809C>A	p.Thr270Lys	p.T270K	ENST00000341074	NM_002974.2	270	aCa/aAa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259480	16259480	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	73	519	2	ENST00000375759.3:c.6750del	p.Ala2251GlnfsTer102	p.A2251Qfs*102	ENST00000375759	NM_015001.2	2249	Ccc/cc																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230561649	230561649	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	24	300	0				ENST00000391860	NM_001258311.1																																																																																	
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs769210858		P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	84	432	0	ENST00000361632.4:c.1404del	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925543	114925543	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774534267		P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	136	419	0	ENST00000543371.1:c.1621G>A	p.Ala541Thr	p.A541T	ENST00000543371	NM_001198531.1	541	Gct/Act																																																																															
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	109	365	0	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																															
PAK1	5058	MSKCC	GRCh37	11	77103387	77103387	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs779686585		P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	127	372	0	ENST00000356341.3:c.179C>A	p.Pro60His	p.P60H	ENST00000356341	NM_002576.4	60	cCt/cAt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856254	111856254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	75	399	0	ENST00000341259.2:c.305C>T	p.Ala102Val	p.A102V	ENST00000341259	NM_005475.2	102	gCg/gTg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426644	121426644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137853243		P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	122	432	0	ENST00000257555.6:c.335C>T	p.Pro112Leu	p.P112L	ENST00000257555		112	cCg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434005	49434005	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	52	462	2	ENST00000301067.7:c.7548del	p.Asn2517IlefsTer26	p.N2517Ifs*26	ENST00000301067	NM_003482.3	2516	ccC/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445095	49445095	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	40	470	1	ENST00000301067.7:c.2371del	p.Gln791ArgfsTer139	p.Q791Rfs*139	ENST00000301067	NM_003482.3	791	Cag/ag																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868072	56868072	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771065608		P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	139	390	2	ENST00000308159.5:c.1570C>T	p.Arg524Trp	p.R524W	ENST00000308159	NM_014669.4	524	Cgg/Tgg																																																																															
CDH1	999	MSKCC	GRCh37	16	68842662	68842662	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	124	440	0	ENST00000261769.5:c.602del	p.Pro201LeufsTer14	p.P201Lfs*14	ENST00000261769	NM_004360.3	200	Ccc/cc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	116	444	1	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	295	571	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	77	457	2	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272337	15272337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs776990686		P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	52	530	3	ENST00000263388.2:c.6102del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2034	ccC/cc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622330	1622330	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377067150		P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	105	491	0	ENST00000344749.5:c.634G>A	p.Ala212Thr	p.A212T	ENST00000344749	NM_001136139.2	212	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220070	36220070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	238	548	0	ENST00000222270.7:c.4790G>A	p.Arg1597Gln	p.R1597Q	ENST00000222270	NM_014727.1	1597	cGg/cAg																																																																															
CASP8	841	MSKCC	GRCh37	2	202149917	202149917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	182	471	0	ENST00000358485.4:c.1358C>T	p.Pro453Leu	p.P453L	ENST00000358485	NM_001080125.1	453	cCg/cTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202150030	202150030	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs931648756		P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	89	454	0	ENST00000358485.4:c.1471C>T	p.Arg491Ter	p.R491*	ENST00000358485	NM_001080125.1	491	Cga/Tga																																																																															
SOS1	6654	MSKCC	GRCh37	2	39278406	39278406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775052125		P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	84	295	0	ENST00000402219.2:c.743G>A	p.Arg248His	p.R248H	ENST00000402219	NM_005633.3	248	cGc/cAc																																																																															
REL	5966	MSKCC	GRCh37	2	61149071	61149071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772899527		P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	137	449	0	ENST00000295025.8:c.1261C>T	p.Arg421Cys	p.R421C	ENST00000295025	NM_002908.2	421	Cgc/Tgc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62305428	62305428	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs201365106		P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	113	409	1	ENST00000482936.1:c.901G>A	p.Ala301Thr	p.A301T	ENST00000482936		301	Gcg/Acg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	255	401	9	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437564	52437565	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	132	469	0	ENST00000460680.1:c.1596dup	p.Gly533TrpfsTer4	p.G533Wfs*4	ENST00000460680	NM_004656.3	532	-/T																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	142	366	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526792	31526792	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	81	324	1	ENST00000344624.3:c.248del	p.Pro83HisfsTer25	p.P83Hfs*25	ENST00000344624		83	cCa/ca																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	115	331	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117638325	117638325	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3752566		P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	80	322	0	ENST00000368508.3:c.6116G>A	p.Arg2039His	p.R2039H	ENST00000368508	NM_002944.2	2039	cGt/cAt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150022976	150022976	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373625760		P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	146	314	0	ENST00000253339.5:c.287G>A	p.Arg96Gln	p.R96Q	ENST00000253339		96	cGg/cAg																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26021115	26021116	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-	rs770926417		P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	130	491	0	ENST00000357647.3:c.403_404del	p.Arg135GlyfsTer?	p.R135Gfs*?	ENST00000357647	NM_003529.2	133	gGA/g																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675170	30675172	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs1472156046		P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	130	429	0	ENST00000376406.3:c.3073_3075del	p.Lys1025del	p.K1025del	ENST00000376406	NM_014641.2	1025	AAG/-																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288590	33288590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	116	364	1	ENST00000374542.5:c.962G>A	p.Gly321Asp	p.G321D	ENST00000374542	NM_001141970.1	321	gGc/gAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	123	439	3	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																																																															
AGO2	27161	MSKCC	GRCh37	8	141566342	141566342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	123	398	0	ENST00000220592.5:c.1070C>T	p.Thr357Met	p.T357M	ENST00000220592	NM_012154.3	357	aCg/aTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465651	8465651	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772237001		P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	94	402	0	ENST00000356435.5:c.3529C>T	p.Arg1177Cys	p.R1177C	ENST00000356435		1177	Cgc/Tgc																																																																															
ARAF	369	MSKCC	GRCh37	X	47430770	47430770	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	80	446	0	ENST00000377045.4:c.1735C>T	p.Arg579Trp	p.R579W	ENST00000377045	NM_001654.4	579	Cgg/Tgg																																																																															
ATRX	546	MSKCC	GRCh37	X	76849308	76849308	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs142180002		P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	113	332	0	ENST00000373344.5:c.5968T>A	p.Ser1990Thr	p.S1990T	ENST00000373344	NM_000489.3	1990	Tct/Act																																																																															
MTOR	2475	MSKCC	GRCh37	1	11303238	11303238	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	119	407	0	ENST00000361445.4:c.1345A>G	p.Lys449Glu	p.K449E	ENST00000361445	NM_004958.3	449	Aag/Gag																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856082	111856082	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	87	444	0	ENST00000341259.2:c.133T>C	p.Tyr45His	p.Y45H	ENST00000341259	NM_005475.2	45	Tac/Cac																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858455	57858455	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	102	349	0	ENST00000228682.2:c.194-1G>T		p.X65_splice	ENST00000228682	NM_005269.2	65																																																																																
KLF5	688	MSKCC	GRCh37	13	73633700	73633700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	72	316	0	ENST00000377687.4:c.235C>T	p.Arg79Trp	p.R79W	ENST00000377687	NM_001730.3	79	Cgg/Tgg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10251005	10251005	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	37	335	0	ENST00000340748.4:c.3476-1G>T		p.X1159_splice	ENST00000340748		1159																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36229274	36229274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	68	536	0	ENST00000222270.7:c.7964G>A	p.Cys2655Tyr	p.C2655Y	ENST00000222270	NM_014727.1	2655	tGt/tAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41400166	41400166	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	64	378	0	ENST00000373198.4:c.593T>C	p.Leu198Pro	p.L198P	ENST00000373198	NM_133170.3	198	cTc/cCc																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961520	54961520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	106	396	0	ENST00000312783.6:c.112C>T	p.Pro38Ser	p.P38S	ENST00000312783	NM_198436.1	38	Cct/Tct																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103662	47103662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	59	382	2	ENST00000409792.3:c.6284C>A	p.Pro2095Gln	p.P2095Q	ENST00000409792	NM_014159.6	2095	cCa/cAa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651426	52651426	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	131	343	0	ENST00000394830.3:c.1670A>G	p.Asp557Gly	p.D557G	ENST00000394830	NM_018313.4	557	gAt/gGt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89156926	89156926	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	82	372	0	ENST00000336596.2:c.28C>A	p.Leu10Ile	p.L10I	ENST00000336596	NM_005233.5	10	Ctt/Att																																																																															
KDR	3791	MSKCC	GRCh37	4	55961097	55961097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	108	328	0	ENST00000263923.4:c.2843G>T	p.Gly948Val	p.G948V	ENST00000263923	NM_002253.2	948	gGg/gTg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520459	176520459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	42	425	0	ENST00000292408.4:c.1304G>A	p.Gly435Asp	p.G435D	ENST00000292408	NM_213647.1	435	gGc/gAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179505	56179505	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	132	252	1	ENST00000399503.3:c.3818A>G	p.Gln1273Arg	p.Q1273R	ENST00000399503	NM_005921.1	1273	cAg/cGg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710719	117710719	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	163	426	0	ENST00000368508.3:c.1553T>C	p.Phe518Ser	p.F518S	ENST00000368508	NM_002944.2	518	tTc/tCc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741158	145741158	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	167	439	0	ENST00000428558.2:c.1248T>A	p.Cys416Ter	p.C416*	ENST00000428558	NM_004260.3	416	tgT/tgA																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393591	139393591	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3812597		P-0088123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	122	463	0	ENST00000277541.6:c.6055G>A	p.Ala2019Thr	p.A2019T	ENST00000277541	NM_017617.3	2019	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0088125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	227	526	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767326		P-0088125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	129	313	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100390	27100390	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0088125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	195	464	0	ENST00000324856.7:c.4101+1G>A		p.X1367_splice	ENST00000324856	NM_006015.4	1367																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0088125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	176	302	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518437	204518437	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201947927		P-0088156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	123	779	0	ENST00000367182.3:c.1100C>T	p.Ser367Leu	p.S367L	ENST00000367182	NM_001278516.1	367	tCg/tTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18439830	18439830	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs186647102		P-0088156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	76	507	0	ENST00000266497.5:c.728C>T	p.Thr243Met	p.T243M	ENST00000266497		243	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0088156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	87	518	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395746	45395746	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0088156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	156	680	1	ENST00000262160.6:c.388C>T	p.Arg130Ter	p.R130*	ENST00000262160	NM_005901.5	130	Cga/Tga																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374245	138374245	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	137	615	0	ENST00000289153.2:c.3199G>T	p.Asp1067Tyr	p.D1067Y	ENST00000289153	NM_006219.2	1067	Gac/Tac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0088156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	171	703	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112154942	112154942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779780		P-0088156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	144	648	0	ENST00000257430.4:c.1213C>T	p.Arg405Ter	p.R405*	ENST00000257430	NM_000038.5	405	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175925	112175925	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0088156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	166	751	1	ENST00000257430.4:c.4634C>A	p.Ser1545Ter	p.S1545*	ENST00000257430	NM_000038.5	1545	tCa/tAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140481403	140481403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913357		P-0088156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	161	491	2	ENST00000288602.6:c.1405G>A	p.Gly469Arg	p.G469R	ENST00000288602	NM_004333.4	469	Gga/Aga																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891277	101891277	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0088156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	237	624	0	ENST00000374994.4:c.238C>T	p.Arg80Ter	p.R80*	ENST00000374994	NM_004612.2	80	Cga/Tga																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907161	101907161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	95	469	0	ENST00000374994.4:c.1121G>A	p.Gly374Glu	p.G374E	ENST00000374994	NM_004612.2	374	gGa/gAa																																																																															
TET1	80312	MSKCC	GRCh37	10	70404692	70404692	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	117	658	0	ENST00000373644.4:c.2206T>C	p.Ser736Pro	p.S736P	ENST00000373644	NM_030625.2	736	Tcg/Ccg																																																																															
APC	324	MSKCC	GRCh37	5	112157632	112157633	+	stop_gained	Nonsense_Mutation	DNP	GT	GT	AG			P-0088156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	81	460	0	ENST00000257430.4:c.1352_1353delinsAG	p.Cys451Ter	p.C451*	ENST00000257430	NM_000038.5	451	tGT/tAG																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450397	50450397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088226-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	69	498	1	ENST00000331340.3:c.581C>T	p.Thr194Met	p.T194M	ENST00000331340	NM_006060.4	194	aCg/aTg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136214	64136214	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371615792		P-0088226-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	62	532	0	ENST00000334205.4:c.1373G>A	p.Arg458His	p.R458H	ENST00000334205	NM_003942.2	458	cGc/cAc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446745	29446745	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200918833		P-0088226-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	27	553	0	ENST00000544604.2:c.2576G>A	p.Arg859Gln	p.R859Q	ENST00000544604	NM_001206998.1	859	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0088241-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	84	452	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749500	41749500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088241-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	64	332	0	ENST00000226382.2:c.295C>T	p.Arg99Trp	p.R99W	ENST00000226382	NM_003924.3	99	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0088241-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	166	420	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
ALK	238	MSKCC	GRCh37	2	30143288	30143288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088241-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	61	455	0	ENST00000389048.3:c.238C>A	p.Leu80Met	p.L80M	ENST00000389048	NM_004304.4	80	Ctg/Atg																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84390297	84390298	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0088241-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	39	304	0	ENST00000321945.7:c.483_484del	p.Phe161LeufsTer14	p.F161Lfs*14	ENST00000321945	NM_139076.2	161	ttTCac/ttac																																																																															
TP63	8626	MSKCC	GRCh37	3	189612073	189612073	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0088244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			711	23	551	0	ENST00000264731.3:c.1825G>T	p.Glu609Ter	p.E609*	ENST00000264731	NM_003722.4	609	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0088244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	14	346	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0088245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	74	465	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753660142		P-0088245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	199	470	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858680	9858680	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	30	521	0	ENST00000330684.3:c.2721G>T	p.Met907Ile	p.M907I	ENST00000330684	NM_001134407.1	907	atG/atT																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711873	89711873	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0088245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	19	345	0	ENST00000371953.3:c.493-2A>T		p.X165_splice	ENST00000371953	NM_000314.4	165																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8486255	8486255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	58	456	0	ENST00000356435.5:c.2562G>T	p.Gln854His	p.Q854H	ENST00000356435		854	caG/caT																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692811	89692811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0088245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			89	22	199	0	ENST00000371953.3:c.295G>A	p.Glu99Lys	p.E99K	ENST00000371953	NM_000314.4	99	Gaa/Aaa																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67196474	67196474	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0088245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	137	326	1	ENST00000312629.5:c.100T>G	p.Leu34Val	p.L34V	ENST00000312629	NM_003952.2	34	Ttg/Gtg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5089674	5089674	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0088245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	28	295	0	ENST00000381652.3:c.2572G>T	p.Gly858Cys	p.G858C	ENST00000381652	NM_004972.3	858	Ggt/Tgt																																																																															
ALK	238	MSKCC	GRCh37	2	29543670	29543670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	96	464	0	ENST00000389048.3:c.1493C>A	p.Thr498Asn	p.T498N	ENST00000389048	NM_004304.4	498	aCt/aAt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120509011	120509011	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0088245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	132	446	0	ENST00000256646.2:c.1555C>G	p.Leu519Val	p.L519V	ENST00000256646	NM_024408.3	519	Ctg/Gtg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117629982	117629982	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0088245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	22	387	0	ENST00000368508.3:c.6544C>A	p.Pro2182Thr	p.P2182T	ENST00000368508	NM_002944.2	2182	Cca/Aca																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356119	66356119	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	52	414	0	ENST00000273854.3:c.1378G>T	p.Val460Leu	p.V460L	ENST00000273854	NM_004439.5	460	Gta/Tta																																																																															
RAD21	5885	MSKCC	GRCh37	8	117862999	117862999	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0088245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	28	277	0	ENST00000297338.2:c.1478A>G	p.Gln493Arg	p.Q493R	ENST00000297338	NM_006265.2	493	cAg/cGg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225365125	225365125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	52	477	0	ENST00000264414.4:c.1565G>A	p.Cys522Tyr	p.C522Y	ENST00000264414	NM_003590.4	522	tGc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0085609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	218	348	3	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0086830-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			399	197	329	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123325062	123325062	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086830-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	133	435	0	ENST00000358487.5:c.266G>C	p.Gly89Ala	p.G89A	ENST00000358487	NM_000141.4	89	gGg/gCg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197701	66197701	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086830-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			348	108	344	0	ENST00000273854.3:c.2998G>T	p.Val1000Leu	p.V1000L	ENST00000273854	NM_004439.5	1000	Gtg/Ttg																																																																															
INSR	3643	MSKCC	GRCh37	19	7168070	7168070	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086830-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	86	369	0	ENST00000302850.5:c.1519A>G	p.Thr507Ala	p.T507A	ENST00000302850	NM_000208.2	507	Aca/Gca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860154	151860154	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086830-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			529	236	500	0	ENST00000262189.6:c.10508A>T	p.Gln3503Leu	p.Q3503L	ENST00000262189	NM_170606.2	3503	cAg/cTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139404295	139404295	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086830-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			558	78	417	0	ENST00000277541.6:c.2859del	p.Cys954AlafsTer225	p.C954Afs*225	ENST00000277541	NM_017617.3	953	ccC/cc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27022896	27022896	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0086830-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	84	244	0	ENST00000324856.7:c.2T>A	p.Met1?	p.M1?	ENST00000324856	NM_006015.4	1	aTg/aAg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256644	19256644	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	165	365	0	ENST00000162023.5:c.1069C>G	p.Leu357Val	p.L357V	ENST00000162023		357	Ctg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578277	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0087749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	140	526	0	ENST00000269305.4:c.572_574del	p.Pro191del	p.P191del	ENST00000269305	NM_001126112.2	191	cCTCag/cag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212522509	212522509	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs532377012		P-0087749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	127	391	2	ENST00000342788.4:c.1916C>T	p.Thr639Met	p.T639M	ENST00000342788	NM_005235.2	639	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112155042	112155042	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0087749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	249	295	0	ENST00000257430.4:c.1312+1G>T		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8485846	8485846	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146684382		P-0087749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	141	358	0	ENST00000356435.5:c.2971G>A	p.Asp991Asn	p.D991N	ENST00000356435		991	Gat/Aat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056319	27056319	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0087749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	52	364	0	ENST00000324856.7:c.1315C>T	p.Gln439Ter	p.Q439*	ENST00000324856	NM_006015.4	439	Cag/Tag																																																																															
CYLD	1540	MSKCC	GRCh37	16	50815287	50815287	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	196	358	0	ENST00000398568.2:c.1640C>G	p.Pro547Arg	p.P547R	ENST00000398568	NM_001042412.1	547	cCg/cGg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111546	8111547	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0087750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	102	370	0	ENST00000346208.3:c.1033dup	p.Tyr345LeufsTer7	p.Y345Lfs*7	ENST00000346208		344	-/T																																																																															
CBFB	865	MSKCC	GRCh37	16	67063352	67063352	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0087750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	60	313	0	ENST00000412916.2:c.42del	p.Asn14LysfsTer8	p.N14Kfs*8	ENST00000412916		14	aaC/aa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220703	1220703	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	99	396	0	ENST00000326873.7:c.721G>C	p.Ala241Pro	p.A241P	ENST00000326873	NM_000455.4	241	Gct/Cct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0087752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	153	357	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
KIT	3815	MSKCC	GRCh37	4	55561705	55561705	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	88	390	0	ENST00000288135.5:c.95G>T	p.Gly32Val	p.G32V	ENST00000288135	NM_000222.2	32	gGg/gTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591085	67591085	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519839		P-0087777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	297	584	1	ENST00000274335.5:c.1678G>T	p.Asp560Tyr	p.D560Y	ENST00000274335		560	Gac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0087777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	569	768	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577070	7577070	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0087777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	286	805	2	ENST00000269305.4:c.868del	p.Arg290AlafsTer55	p.R290Afs*55	ENST00000269305	NM_001126112.2	290	Cgc/gc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741363	17741363	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	45	548	0	ENST00000250003.3:c.34G>C	p.Asp12His	p.D12H	ENST00000250003	NM_002478.4	12	Gac/Cac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0087777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	122	427	1	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
MSH3	4437	MSKCC	GRCh37	5	80160758	80160758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	93	579	0	ENST00000265081.6:c.3127C>T	p.Pro1043Ser	p.P1043S	ENST00000265081	NM_002439.4	1043	Cca/Tca																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368259	45368259	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0087777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	375	634	0	ENST00000262160.6:c.1343G>A	p.Trp448Ter	p.W448*	ENST00000262160	NM_005901.5	448	tGg/tAg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2955007	2955007	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0087777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			722	64	650	0	ENST00000396946.4:c.2704-1G>A		p.X902_splice	ENST00000396946	NM_032415.4	902																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0087778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	395	659	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
WT1	7490	MSKCC	GRCh37	11	32414263	32414263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121907906		P-0087778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	141	567	0	ENST00000332351.3:c.1288C>T	p.Arg430Ter	p.R430*	ENST00000332351	NM_024426.4	430	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971194	21971194	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0087778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	251	639	0	ENST00000304494.5:c.164del	p.Gly55AlafsTer91	p.G55Afs*91	ENST00000304494	NM_000077.4	55	gGc/gc																																																																															
BRAF	673	MSKCC	GRCh37	7	140549967	140549967	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	238	485	0	ENST00000288602.6:c.184G>C	p.Glu62Gln	p.E62Q	ENST00000288602	NM_004333.4	62	Gag/Cag																																																																															
JAK3	3718	MSKCC	GRCh37	19	17949113	17949113	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0087778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	167	571	0	ENST00000458235.1:c.1528C>T	p.Gln510Ter	p.Q510*	ENST00000458235	NM_000215.3	510	Cag/Tag																																																																															
ALB	213	MSKCC	GRCh37	4	74283928	74283928	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs75920790		P-0087778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	302	568	0	ENST00000295897.4:c.1552G>A	p.Asp518Asn	p.D518N	ENST00000295897	NM_000477.5	518	Gat/Aat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510177	187510177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	152	714	0	ENST00000441802.2:c.13336G>A	p.Asp4446Asn	p.D4446N	ENST00000441802	NM_005245.3	4446	Gat/Aat																																																																															
XPO1	7514	MSKCC	GRCh37	2	61724048	61724048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	110	515	0	ENST00000401558.2:c.854C>T	p.Thr285Ile	p.T285I	ENST00000401558	NM_003400.3	285	aCa/aTa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983030	201983030	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	398	637	0	ENST00000359651.3:c.879G>T	p.Met293Ile	p.M293I	ENST00000359651		293	atG/atT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117725592	117725592	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0087778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	77	450	0	ENST00000368508.3:c.290-1G>A		p.X97_splice	ENST00000368508	NM_002944.2	97																																																																																
GAB1	2549	MSKCC	GRCh37	4	144390189	144390189	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			879	154	571	0	ENST00000262994.4:c.1932G>C	p.Lys644Asn	p.K644N	ENST00000262994	NM_002039.3	644	aaG/aaC																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289578	33289578	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	168	608	0	ENST00000374542.5:c.125C>G	p.Ser42Cys	p.S42C	ENST00000374542	NM_001141970.1	42	tCt/tGt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118347598	118347598	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	254	574	0	ENST00000534358.1:c.3235C>G	p.Leu1079Val	p.L1079V	ENST00000534358	NM_005933.3	1079	Ctt/Gtt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100022	157100022	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	159	491	0	ENST00000346085.5:c.959G>C	p.Ser320Thr	p.S320T	ENST00000346085	NM_020732.3	320	aGc/aCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0087780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	44	454	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2220700	2220700	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1303783514		P-0087780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			67	31	406	0	ENST00000326181.6:c.317C>T	p.Thr106Ile	p.T106I	ENST00000326181	NM_032271.2	106	aCa/aTa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010443	48010443	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	38	336	0	ENST00000234420.5:c.71C>G	p.Ser24Trp	p.S24W	ENST00000234420	NM_000179.2	24	tCg/tGg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150933321	150933321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	22	524	0	ENST00000271640.5:c.2783G>A	p.Arg928Gln	p.R928Q	ENST00000271640	NM_001145415.1	928	cGg/cAg																																																																															
ETV6	2120	MSKCC	GRCh37	12	11905424	11905424	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	35	340	0	ENST00000396373.4:c.74C>G	p.Pro25Arg	p.P25R	ENST00000396373	NM_001987.4	25	cCg/cGg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422737	47422737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	26	417	0	ENST00000404338.3:c.805C>G	p.Gln269Glu	p.Q269E	ENST00000404338	NM_004491.4	269	Cag/Gag																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs869320707		P-0088044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	38	588	0	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
ERG	2078	MSKCC	GRCh37	21	39775569	39775569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	27	540	0	ENST00000288319.7:c.451G>A	p.Gly151Ser	p.G151S	ENST00000288319	NM_182918.3	151	Ggc/Agc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411087	63411087	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0088044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	22	525	0	ENST00000330258.3:c.2080G>T	p.Asp694Tyr	p.D694Y	ENST00000330258	NM_152424.3	694	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0088045-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	13	299	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911219	29911219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088045-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	16	243	0	ENST00000376809.5:c.518C>T	p.Ala173Val	p.A173V	ENST00000376809	NM_002116.7	173	gCg/gTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0088048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	340	465	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177011	56177014	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0088048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	212	378	0	ENST00000399503.3:c.2286_2289del	p.Arg763CysfsTer35	p.R763Cfs*35	ENST00000399503	NM_005921.1	761	ATAGat/at																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553507	106553507	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775366457		P-0088048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	20	529	2	ENST00000369096.4:c.1472C>T	p.Ala491Val	p.A491V	ENST00000369096	NM_001198.3	491	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578262	7578263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGATAAGATGCTGA			P-0088048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	130	663	0	ENST00000269305.4:c.573_586dup	p.Arg196LeufsTer56	p.R196Lfs*56	ENST00000269305	NM_001126112.2	196	cga/cTCAGCATCTTATCCga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177014	56177016	+	frameshift_variant	Frame_Shift_Del	DEL	GAT	GAT	TA			P-0088048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	216	358	0	ENST00000399503.3:c.2284_2286delinsTA	p.Asp762Ter	p.D762*	ENST00000399503	NM_005921.1	762	GAT/TA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0088049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	10	334	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230468694	230468694	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370203975		P-0088049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	14	618	0	ENST00000525115.1:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000525115		321	cGg/cAg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150917457	150917457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0088049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	58	557	0	ENST00000271640.5:c.1013C>T	p.Thr338Ile	p.T338I	ENST00000271640	NM_001145415.1	338	aCt/aTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0076231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	14	397	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1202793339		P-0076231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			708	34	553	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0081403-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			304	90	283	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25990462	25990463	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0081403-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			420	45	384	0	ENST00000435504.4:c.764_765del	p.Arg255ThrfsTer10	p.R255Tfs*10	ENST00000435504		255	aGA/a																																																																															
EZH1	2145	MSKCC	GRCh37	17	40856679	40856679	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081403-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			348	44	342	0	ENST00000428826.2:c.1958A>G	p.Asp653Gly	p.D653G	ENST00000428826		653	gAt/gGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061724	38061724	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	40	584	0	ENST00000250448.2:c.265T>G	p.Ser89Ala	p.S89A	ENST00000250448	NM_004496.3	89	Tcg/Gcg																																																																															
ERF	2077	MSKCC	GRCh37	19	42752800	42752800	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	29	592	0	ENST00000222329.4:c.1464G>C	p.Trp488Cys	p.W488C	ENST00000222329	NM_006494.2	488	tgG/tgC																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099103	27099103	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			975	181	589	0	ENST00000324856.7:c.3524del	p.Pro1175HisfsTer5	p.P1175Hfs*5	ENST00000324856	NM_006015.4	1173	atC/at																																																																															
CDH1	999	MSKCC	GRCh37	16	68835733	68835733	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0086181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	221	452	0	ENST00000261769.5:c.324A>C	p.Arg108Ser	p.R108S	ENST00000261769	NM_004360.3	108	agA/agC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	347	518	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																															
EP300	2033	MSKCC	GRCh37	22	41513482	41513482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			964	139	504	1	ENST00000263253.7:c.386C>T	p.Ala129Val	p.A129V	ENST00000263253	NM_001429.3	129	gCa/gTa																																																																															
TERT	7015	MSKCC	GRCh37	5	1296132	1296132	+	upstream_gene_variant	5'Flank	SNP	C	C	G			P-0086181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			856	173	550	0				ENST00000310581	NM_198253.2																																																																																	
PIK3R1	5295	MSKCC	GRCh37	5	67591100	67591129	+	inframe_deletion	In_Frame_Del	DEL	AGCATTAAACCAGACCTTATCCAGCTGAGA	AGCATTAAACCAGACCTTATCCAGCTGAGA	-			P-0086181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	60	324	0	ENST00000274335.5:c.1694_1723del	p.Ser565_Arg574del	p.S565_R574del	ENST00000274335		565	AGCATTAAACCAGACCTTATCCAGCTGAGA/-																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685315	89685315	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0087888-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			69	61	212	0	ENST00000371953.3:c.209+1G>C		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																																
TP53	7157	MSKCC	GRCh37	17	7577537	7577538	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0087888-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	242	414	1	ENST00000269305.4:c.743_744delinsTT	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGG/cTT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845813	151845813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087888-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			455	74	522	0	ENST00000262189.6:c.13199G>A	p.Arg4400Gln	p.R4400Q	ENST00000262189	NM_170606.2	4400	cGg/cAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413225	139413225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087888-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	231	451	0	ENST00000277541.6:c.917G>C	p.Cys306Ser	p.C306S	ENST00000277541	NM_017617.3	306	tGc/tCc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11169468	11169468	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087888-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			268	341	366	0	ENST00000344626.4:c.4538G>C	p.Arg1513Pro	p.R1513P	ENST00000344626	NM_003072.3	1513	cGc/cCc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46277837	46277837	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087888-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			960	138	460	0	ENST00000371998.3:c.3635C>G	p.Pro1212Arg	p.P1212R	ENST00000371998		1212	cCc/cGc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902635	1902635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087888-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			692	271	505	0	ENST00000382895.3:c.254G>T	p.Arg85Leu	p.R85L	ENST00000382895	NM_133330.2	85	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0087892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			55	14	283	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578217	7578217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	74	520	0	ENST00000269305.4:c.632C>T	p.Thr211Ile	p.T211I	ENST00000269305	NM_001126112.2	211	aCt/aTt																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0087892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			42	10	452	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0087952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			950	155	509	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0087952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	288	505	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0087952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	120	366	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7579314	7579314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0087952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			847	123	401	0	ENST00000269305.4:c.373A>G	p.Thr125Ala	p.T125A	ENST00000269305	NM_001126112.2	125	Acg/Gcg																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0087952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	74	369	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916124	9916124	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376029542		P-0087952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			724	209	436	0	ENST00000330684.3:c.2165C>T	p.Thr722Met	p.T722M	ENST00000330684	NM_001134407.1	722	aCg/aTg																																																																															
ALK	238	MSKCC	GRCh37	2	29917782	29917782	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56077855		P-0087952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	304	372	0	ENST00000389048.3:c.886G>A	p.Glu296Lys	p.E296K	ENST00000389048	NM_004304.4	296	Gag/Aag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211090	36211090	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776595230		P-0087952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1024	73	476	0	ENST00000222270.7:c.841C>T	p.Arg281Cys	p.R281C	ENST00000222270	NM_014727.1	281	Cgt/Tgt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2977593	2977593	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867822144		P-0087952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			867	111	319	1	ENST00000396946.4:c.1091G>A	p.Arg364His	p.R364H	ENST00000396946	NM_032415.4	364	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0087952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	76	241	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21347168	21347168	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs935736801		P-0087952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			783	149	498	0	ENST00000215739.8:c.1235G>A	p.Arg412His	p.R412H	ENST00000215739	NM_006767.3	412	cGc/cAc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81934333	81934333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	345	392	0	ENST00000359376.3:c.1310G>A	p.Ser437Asn	p.S437N	ENST00000359376	NM_002661.3	437	aGt/aAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919298	178919298	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	71	269	0	ENST00000263967.3:c.783C>A	p.Phe261Leu	p.F261L	ENST00000263967	NM_006218.2	261	ttC/ttA																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679940	33679940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	124	446	0	ENST00000308377.4:c.2141G>A	p.Gly714Asp	p.G714D	ENST00000308377	NM_152270.3	714	gGc/gAc																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47602433	47602434	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGA			P-0087952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	68	263	0	ENST00000263735.4:c.489_491+1dup		p.-162fs	ENST00000263735	NM_002354.2	162	-/CGGA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0087957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	315	565	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs137854575		P-0087957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	234	478	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660045		P-0087957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	163	508	0	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0087957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	96	244	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662313	227662313	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771539785		P-0087957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	197	545	0	ENST00000305123.5:c.1142G>A	p.Arg381His	p.R381H	ENST00000305123	NM_005544.2	381	cGc/cAc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18943098	18943099	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0087957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			729	234	482	0	ENST00000262803.5:c.85_86del	p.Gln29GlyfsTer13	p.Q29Gfs*13	ENST00000262803	NM_002911.3	27	gAC/g																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636758	8636758	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087958-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	156	422	0	ENST00000356435.5:c.151C>A	p.Pro51Thr	p.P51T	ENST00000356435		51	Cca/Aca																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845292	42845294	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0087958-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	275	422	0	ENST00000398585.3:c.968_970del	p.Ile323del	p.I323del	ENST00000398585	NM_001135099.1	323	aTCAcc/acc																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872662	136872662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087958-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	204	451	0	ENST00000241393.3:c.836C>T	p.Thr279Ile	p.T279I	ENST00000241393	NM_003467.2	279	aCt/aTt																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0087964-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	12	456	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30108043	30108043	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762349599		P-0087964-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	12	299	0	ENST00000331968.5:c.764G>A	p.Arg255Gln	p.R255Q	ENST00000331968	NM_002742.2	255	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G	rs587781702		P-0087967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	191	526	0	ENST00000269305.4:c.920-1G>C		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71942051	71942051	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0087967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	168	490	0	ENST00000298229.2:c.1316del	p.Pro439GlnfsTer4	p.P439Qfs*4	ENST00000298229	NM_001567.3	439	Cca/ca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0036861-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			227	31	360	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036861-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			475	160	402	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132751	152132751	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036861-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			239	44	172	0	ENST00000262189.6:c.121C>G	p.Arg41Gly	p.R41G	ENST00000262189	NM_170606.2	41	Cgc/Ggc																																																																															
KDR	3791	MSKCC	GRCh37	4	55953926	55953926	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0036861-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			225	39	241	0	ENST00000263923.4:c.3511-1G>T		p.X1171_splice	ENST00000263923	NM_002253.2	1171																																																																																
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0085852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	92	427	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371815	55371815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			62	41	408	0	ENST00000297316.4:c.505C>T	p.Pro169Ser	p.P169S	ENST00000297316	NM_022454.3	169	Ccc/Tcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs121913274		P-0085852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	109	238	0	ENST00000263967.3:c.1634A>C	p.Glu545Ala	p.E545A	ENST00000263967	NM_006218.2	545	gAg/gCg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246489	41246489	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs80356935		P-0085852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	98	477	0	ENST00000357654.3:c.1059G>A	p.Trp353Ter	p.W353*	ENST00000357654	NM_007294.3	353	tgG/tgA																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15942947	15942969	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TGGCCTCTAGAGCTAACTGAGCC	TGGCCTCTAGAGCTAACTGAGCC	-			P-0085852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	119	455	0	ENST00000268712.3:c.6734-1_6755del		p.X2245_splice	ENST00000268712	NM_006311.3	2245																																																																																
NTRK3	4916	MSKCC	GRCh37	15	88678350	88678350	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	13	420	0	ENST00000360948.2:c.1186C>G	p.Leu396Val	p.L396V	ENST00000360948	NM_001012338.2	396	Ctc/Gtc																																																																															
FH	2271	MSKCC	GRCh37	1	241663776	241663776	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0087759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	26	217	0	ENST00000366560.3:c.1351G>T	p.Glu451Ter	p.E451*	ENST00000366560	NM_000143.3	451	Gag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974780	21974780	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	73	530	0	ENST00000304494.5:c.47T>C	p.Leu16Pro	p.L16P	ENST00000304494	NM_000077.4	16	cTg/cCg																																																																															
MDM2	4193	MSKCC	GRCh37	12	69210700	69210700	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	135	392	0	ENST00000462284.1:c.283C>G	p.Pro95Ala	p.P95A	ENST00000462284	NM_002392.5	95	Cca/Gca																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162990	47162990	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0087759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	124	504	0	ENST00000409792.3:c.3136A>T	p.Asn1046Tyr	p.N1046Y	ENST00000409792	NM_014159.6	1046	Aat/Tat																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948277	71948277	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	170	603	0	ENST00000298229.2:c.2989C>A	p.Leu997Met	p.L997M	ENST00000298229	NM_001567.3	997	Ctg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448467	49448490	+	inframe_deletion	In_Frame_Del	DEL	GCTCCCGCTGCCCGTGTAGACTGG	GCTCCCGCTGCCCGTGTAGACTGG	-			P-0087759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	139	521	0	ENST00000301067.7:c.221_244del	p.Pro74_Glu81del	p.P74_E81del	ENST00000301067	NM_003482.3	74	cCCAGTCTACACGGGCAGCGGGAGCta/cta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1060501197		P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	189	471	0	ENST00000269305.4:c.716del	p.Asn239ThrfsTer8	p.N239Tfs*8	ENST00000269305	NM_001126112.2	239	aAc/ac																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164509	36164509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	76	501	0	ENST00000300305.3:c.1366G>A	p.Glu456Lys	p.E456K	ENST00000300305		456	Gag/Aag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410021	63410021	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1258291174		P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	162	689	43	ENST00000330258.3:c.3146G>A	p.Arg1049Gln	p.R1049Q	ENST00000330258	NM_152424.3	1049	cGa/cAa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16089913	16089913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	83	482	0	ENST00000268712.3:c.197G>A	p.Arg66Gln	p.R66Q	ENST00000268712	NM_006311.3	66	cGa/cAa																																																																															
ATM	472	MSKCC	GRCh37	11	108196143	108196143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs564652222		P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	44	465	0	ENST00000278616.4:c.6679C>T	p.Arg2227Cys	p.R2227C	ENST00000278616	NM_000051.3	2227	Cgc/Tgc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984786	11984786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	120	343	0	ENST00000353533.5:c.332G>A	p.Gly111Glu	p.G111E	ENST00000353533	NM_003010.3	111	gGa/gAa																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430347	78430347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	52	558	0	ENST00000370768.2:c.821G>A	p.Gly274Glu	p.G274E	ENST00000370768	NM_003902.3	274	gGa/gAa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	105	765	0	ENST00000244661.2:c.220G>A	p.Glu74Lys	p.E74K	ENST00000244661	NM_003537.3	74	Gaa/Aaa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983318	15983318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	70	470	0	ENST00000268712.3:c.3461C>T	p.Ser1154Leu	p.S1154L	ENST00000268712	NM_006311.3	1154	tCa/tTa																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30325957	30325957	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	32	576	0	ENST00000322652.5:c.2155G>C	p.Glu719Gln	p.E719Q	ENST00000322652	NM_015355.2	719	Gag/Cag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15952187	15952187	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	101	577	0	ENST00000268712.3:c.6508C>T	p.Gln2170Ter	p.Q2170*	ENST00000268712	NM_006311.3	2170	Cag/Tag																																																																															
CENPA	1058	MSKCC	GRCh37	2	27016074	27016074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	43	498	0	ENST00000335756.4:c.350G>A	p.Gly117Asp	p.G117D	ENST00000335756	NM_001809.3	117	gGc/gAc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755583	57755583	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	62	640	0	ENST00000274289.3:c.204del	p.Ile69SerfsTer31	p.I69Sfs*31	ENST00000274289	NM_006622.3	68	gaG/ga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637612	176637612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	39	615	0	ENST00000439151.2:c.2212C>T	p.Leu738Phe	p.L738F	ENST00000439151	NM_022455.4	738	Ctt/Ttt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38277068	38277068	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	74	582	0	ENST00000425967.3:c.1360C>G	p.Leu454Val	p.L454V	ENST00000425967	NM_001174067.1	454	Ctg/Gtg																																																																															
REST	5978	MSKCC	GRCh37	4	57796138	57796138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	83	530	0	ENST00000309042.7:c.1114G>A	p.Asp372Asn	p.D372N	ENST00000309042	NM_005612.4	372	Gat/Aat																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650837	37650840	+	frameshift_variant	Frame_Shift_Del	DEL	CAGC	CAGC	-			P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	156	541	0	ENST00000447079.4:c.2311_2314del	p.Ala771PhefsTer10	p.A771Ffs*10	ENST00000447079	NM_015083.1	770	aCAGCc/ac																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658492	3658492	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	118	626	0	ENST00000294008.3:c.474A>C	p.Gln158His	p.Q158H	ENST00000294008	NM_032444.2	158	caA/caC																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961818	15961818	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	78	585	0	ENST00000268712.3:c.5977C>G	p.Gln1993Glu	p.Q1993E	ENST00000268712	NM_006311.3	1993	Cag/Gag																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149452927	149452927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	82	572	0	ENST00000286301.3:c.1019G>A	p.Gly340Glu	p.G340E	ENST00000286301	NM_005211.3	340	gGa/gAa																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2060876	2060876	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	88	633	0	ENST00000349721.2:c.1582T>G	p.Tyr528Asp	p.Y528D	ENST00000349721	NM_003070.3	528	Tac/Gac																																																																															
MDM4	4194	MSKCC	GRCh37	1	204511971	204511971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	42	543	0	ENST00000367182.3:c.571G>A	p.Glu191Lys	p.E191K	ENST00000367182	NM_001278516.1	191	Gag/Aag																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439886	51439886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	56	567	0	ENST00000262662.1:c.451G>A	p.Glu151Lys	p.E151K	ENST00000262662		151	Gag/Aag																																																																															
NADK	65220	MSKCC	GRCh37	1	1690646	1690646	+	intron_variant	Intron	SNP	G	G	A			P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	63	527	0	ENST00000341426.5:c.264-1897C>T		p.*88*	ENST00000341426	NM_023018.4																																																																																	
LATS2	26524	MSKCC	GRCh37	13	21562537	21562537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	46	420	0	ENST00000382592.4:c.1382C>T	p.Ser461Leu	p.S461L	ENST00000382592	NM_014572.2	461	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579592	7579592	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0087764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	142	427	0	ENST00000269305.4:c.97-2A>T		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
CDK8	1024	MSKCC	GRCh37	13	26978196	26978196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			3135	244	266	0	ENST00000381527.3:c.1373C>T	p.Ser458Leu	p.S458L	ENST00000381527	NM_001260.1	458	tCa/tTa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223060	5223060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1379163672		P-0087764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	95	520	0	ENST00000357368.4:c.2743G>A	p.Glu915Lys	p.E915K	ENST00000357368	NM_002850.3	915	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256682	16256682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	94	504	0	ENST00000375759.3:c.3947G>A	p.Arg1316Lys	p.R1316K	ENST00000375759	NM_015001.2	1316	aGg/aAg																																																																															
INSR	3643	MSKCC	GRCh37	19	7184544	7184544	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	79	356	0	ENST00000302850.5:c.757G>C	p.Val253Leu	p.V253L	ENST00000302850	NM_000208.2	253	Gtg/Ctg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26978117	26978117	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			3698	270	330	0	ENST00000381527.3:c.1294C>G	p.Pro432Ala	p.P432A	ENST00000381527	NM_001260.1	432	Ccc/Gcc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26978139	26978139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			3681	286	329	0	ENST00000381527.3:c.1316C>T	p.Ser439Leu	p.S439L	ENST00000381527	NM_001260.1	439	tCa/tTa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981833	70981833	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	20	409	0	ENST00000276594.2:c.263C>A	p.Pro88His	p.P88H	ENST00000276594	NM_024504.3	88	cCt/cAt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93969078	93969078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	36	402	0	ENST00000369303.4:c.1918G>T	p.Gly640Cys	p.G640C	ENST00000369303	NM_004440.3	640	Ggt/Tgt																																																																															
CDK8	1024	MSKCC	GRCh37	13	26978201	26978201	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			3106	231	266	0	ENST00000381527.3:c.1378C>G	p.Gln460Glu	p.Q460E	ENST00000381527	NM_001260.1	460	Cag/Gag																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371926	55371926	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0087764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	23	389	0	ENST00000297316.4:c.616T>A	p.Cys206Ser	p.C206S	ENST00000297316	NM_022454.3	206	Tgc/Agc																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182641	38182641	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs387907272		P-0087766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	14	542	0	ENST00000396334.3:c.794T>C	p.Leu265Pro	p.L265P	ENST00000396334	NM_002468.4	265	cTg/cCg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47059145	47059146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0087766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	33	510	0	ENST00000409792.3:c.7515dup	p.Lys2506Ter	p.K2506*	ENST00000409792	NM_014159.6	2505	-/T																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66525028	66525028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	33	460	0	ENST00000358598.2:c.787G>A	p.Glu263Lys	p.E263K	ENST00000358598	NM_212471.2	263	Gaa/Aaa																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665346	138665346	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	31	340	0	ENST00000330315.3:c.219G>C	p.Lys73Asn	p.K73N	ENST00000330315	NM_023067.3	73	aaG/aaC																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252992	36252993	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0087851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	45	338	0	ENST00000300305.3:c.369_370insC	p.Val124ArgfsTer14	p.V124Rfs*14	ENST00000300305		123	-/C																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25458613	25458613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	24	316	0	ENST00000264709.3:c.2560G>A	p.Glu854Lys	p.E854K	ENST00000264709	NM_175629.2	854	Gag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098555	11098555	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060502094		P-0087851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	34	427	0	ENST00000344626.4:c.1073C>T	p.Pro358Leu	p.P358L	ENST00000344626	NM_003072.3	358	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577594	7577606	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	ACAGTCAGAGCCA	ACAGTCAGAGCCA	-			P-0087851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	54	327	0	ENST00000269305.4:c.675_687del	p.Gly226ProfsTer17	p.G226Pfs*17	ENST00000269305	NM_001126112.2	225	gtTGGCTCTGACTGT/gt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144122	11144122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	38	361	0	ENST00000344626.4:c.3703G>A	p.Asp1235Asn	p.D1235N	ENST00000344626	NM_003072.3	1235	Gac/Aac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101517	27101517	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	38	398	0	ENST00000324856.7:c.4799C>G	p.Ser1600Cys	p.S1600C	ENST00000324856	NM_006015.4	1600	tCt/tGt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462962	120462962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	27	370	0	ENST00000256646.2:c.5369C>T	p.Thr1790Ile	p.T1790I	ENST00000256646	NM_024408.3	1790	aCa/aTa																																																																															
CDH1	999	MSKCC	GRCh37	16	68863674	68863675	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGAAATTGGAAATTTTATTGATGA			P-0087851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	45	338	0	ENST00000261769.5:c.2415_2439dup	p.Asn814Ter	p.N814*	ENST00000261769	NM_004360.3	805	gat/gATGAAATTGGAAATTTTATTGATGAat																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138426075	138426075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	20	281	0	ENST00000289153.2:c.1456G>A	p.Glu486Lys	p.E486K	ENST00000289153	NM_006219.2	486	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0087854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			43	153	323	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0087854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			43	58	423	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0087854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			20	50	384	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086002	16086002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893646		P-0087854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	70	384	0	ENST00000281043.3:c.1178G>A	p.Arg393His	p.R393H	ENST00000281043	NM_005378.4	393	cGc/cAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18699323	18699323	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199904184		P-0087854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			59	34	399	0	ENST00000266497.5:c.3424C>T	p.Arg1142Cys	p.R1142C	ENST00000266497		1142	Cgt/Tgt																																																																															
MGA	23269	MSKCC	GRCh37	15	41961438	41961438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	51	384	0	ENST00000219905.7:c.346G>A	p.Asp116Asn	p.D116N	ENST00000219905	NM_001164273.1	116	Gat/Aat																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350532	15350532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748633137		P-0087854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			40	66	316	0	ENST00000263377.2:c.3383C>T	p.Ser1128Leu	p.S1128L	ENST00000263377	NM_058243.2	1128	tCg/tTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868196	37868196	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1308928763		P-0087854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	169	373	0	ENST00000269571.5:c.917C>T	p.Thr306Met	p.T306M	ENST00000269571		306	aCg/aTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275240	41275240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	128	432	0	ENST00000349496.5:c.1406G>A	p.Arg469His	p.R469H	ENST00000349496	NM_001904.3	469	cGt/cAt																																																																															
ABL1	25	MSKCC	GRCh37	9	133760753	133760753	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769680358		P-0087854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	70	369	0	ENST00000318560.5:c.3076G>A	p.Ala1026Thr	p.A1026T	ENST00000318560	NM_005157.4	1026	Gcc/Acc																																																																															
TET1	80312	MSKCC	GRCh37	10	70406295	70406295	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762257556		P-0087854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	54	393	0	ENST00000373644.4:c.3809C>T	p.Thr1270Met	p.T1270M	ENST00000373644	NM_030625.2	1270	aCg/aTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133257834	133257834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	18	387	0	ENST00000320574.5:c.94C>T	p.Leu32Phe	p.L32F	ENST00000320574	NM_006231.2	32	Ctc/Ttc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89831420	89831420	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	116	451	0	ENST00000389301.3:c.2656G>C	p.Glu886Gln	p.E886Q	ENST00000389301	NM_000135.2	886	Gag/Cag																																																																															
STK11	6794	MSKCC	GRCh37	19	1222983	1222983	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs398123406		P-0088051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	68	444	0	ENST00000326873.7:c.921-1G>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10597392	10597413	+	protein_altering_variant	In_Frame_Del	DEL	ACCCCACTCCGGCCCGATGTCA	ACCCCACTCCGGCCCGATGTCA	T			P-0088051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	42	447	0	ENST00000171111.5:c.1790_1811delinsA	p.Met597_Val604delinsLys	p.M597_V604delinsK	ENST00000171111	NM_203500.1	597	aTGACATCGGGCCGGAGTGGGGTg/aAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0085539-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	9	201	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0085539-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			645	7	0	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0085539-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			793	22	457	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0085539-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			454	11	278	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971051	21971058	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCCCCG	GCGCCCCG	-			P-0085539-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			701	19	0	0	ENST00000304494.5:c.300_307del	p.Gly101AlafsTer16	p.G101Afs*16	ENST00000304494	NM_000077.4	100	gcCGGGGCGCgg/gcgg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206648211	206648211	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202128741		P-0086507-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			532	136	515	0	ENST00000367120.3:c.232G>A	p.Gly78Arg	p.G78R	ENST00000367120	NM_014002.3	78	Gga/Aga																																																																															
RET	5979	MSKCC	GRCh37	10	43609972	43609972	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759073728		P-0086507-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			466	154	676	0	ENST00000355710.3:c.1924G>A	p.Val642Ile	p.V642I	ENST00000355710	NM_020975.4	642	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579854	7579854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086507-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	115	566	0	ENST00000269305.4:c.59C>T	p.Ser20Leu	p.S20L	ENST00000269305	NM_001126112.2	20	tCa/tTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29562652	29562653	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0086507-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			239	66	417	0	ENST00000358273.4:c.3733dup	p.Thr1245AsnfsTer4	p.T1245Nfs*4	ENST00000358273	NM_001042492.2	1244	-/A																																																																															
STK11	6794	MSKCC	GRCh37	19	1220630	1220642	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGGCTTTCCAG	CCCGGCTTTCCAG	-			P-0086507-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	142	546	0	ENST00000326873.7:c.650_662del	p.Pro217ArgfsTer66	p.P217Rfs*66	ENST00000326873	NM_000455.4	216	tcCCCGGCTTTCCAG/tc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675551	86675551	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0086507-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			85	30	284	0	ENST00000274376.6:c.2488-1G>C		p.X830_splice	ENST00000274376	NM_002890.2	830																																																																																
RB1	5925	MSKCC	GRCh37	13	48953760	48953760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913302		P-0087935-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	56	196	0	ENST00000267163.4:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000267163	NM_000321.2	455	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577112	7577112	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1131691029		P-0087935-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	73	411	0	ENST00000269305.4:c.826G>C	p.Ala276Pro	p.A276P	ENST00000269305	NM_001126112.2	276	Gcc/Ccc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40727138	40727138	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375402843		P-0087935-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			751	125	556	1	ENST00000373198.4:c.3826G>A	p.Val1276Met	p.V1276M	ENST00000373198	NM_133170.3	1276	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0087935-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	54	316	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949141	44949141	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087935-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	46	178	0	ENST00000377967.4:c.3702C>G	p.Cys1234Trp	p.C1234W	ENST00000377967	NM_021140.2	1234	tgC/tgG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0087940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	299	514	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0087940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	235	468	0	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729607	41729607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	255	524	2	ENST00000242208.4:c.922C>T	p.Arg308Cys	p.R308C	ENST00000242208	NM_002192.2	308	Cgt/Tgt																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793139	33793139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	136	367	0	ENST00000498907.2:c.182C>T	p.Ser61Phe	p.S61F	ENST00000498907	NM_004364.3	61	tCc/tTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528641	89528641	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	124	314	0	ENST00000336596.2:c.2941G>T	p.Val981Phe	p.V981F	ENST00000336596	NM_005233.5	981	Gtt/Ttt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56488226	56488226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	203	407	0	ENST00000267101.3:c.1745G>A	p.Gly582Glu	p.G582E	ENST00000267101	NM_001982.3	582	gGg/gAg																																																																															
KIT	3815	MSKCC	GRCh37	4	55592072	55592072	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	67	350	0	ENST00000288135.5:c.1396G>T	p.Gly466Trp	p.G466W	ENST00000288135	NM_000222.2	466	Ggg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112173452	112173452	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0087940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	158	352	0	ENST00000257430.4:c.2161G>T	p.Gly721Ter	p.G721*	ENST00000257430	NM_000038.5	721	Gga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549887	187549887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	55	299	0	ENST00000441802.2:c.4354C>A	p.His1452Asn	p.H1452N	ENST00000441802	NM_005245.3	1452	Cat/Aat																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519961		P-0086557-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			380	22	430	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0086557-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			224	35	293	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56174928	56174928	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0086557-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			305	30	358	0	ENST00000399503.3:c.2087G>A	p.Ser696Asn	p.S696N	ENST00000399503	NM_005921.1	696	aGc/aAc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188001	32188001	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086557-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			451	49	517	0	ENST00000375023.3:c.1220G>T	p.Cys407Phe	p.C407F	ENST00000375023	NM_004557.3	407	tGc/tTc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981525	201981526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0086557-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			282	30	420	0	ENST00000359651.3:c.440_441dup	p.Met148AlafsTer8	p.M148Afs*8	ENST00000359651		147	ggc/gGCgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425073	49425073	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0086557-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			409	50	566	0	ENST00000301067.7:c.13415T>A	p.Val4472Glu	p.V4472E	ENST00000301067	NM_003482.3	4472	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0087797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	69	592	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
ATM	472	MSKCC	GRCh37	11	108128209	108128209	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0087797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	68	366	0	ENST00000278616.4:c.2252C>G	p.Ser751Cys	p.S751C	ENST00000278616	NM_000051.3	751	tCt/tGt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953942	17953942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	60	536	0	ENST00000458235.1:c.460C>T	p.Leu154Phe	p.L154F	ENST00000458235	NM_000215.3	154	Ctc/Ttc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448357	49448357	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0087797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	31	494	0	ENST00000301067.7:c.354T>G	p.Ile118Met	p.I118M	ENST00000301067	NM_003482.3	118	atT/atG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0087799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	135	573	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178095	56178095	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374455781		P-0087799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	165	524	0	ENST00000399503.3:c.3068G>A	p.Arg1023His	p.R1023H	ENST00000399503	NM_005921.1	1023	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519938		P-0087799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	129	416	0	ENST00000263967.3:c.1034A>C	p.Asn345Thr	p.N345T	ENST00000263967	NM_006218.2	345	aAt/aCt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563114	21563114	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	76	614	0	ENST00000382592.4:c.805G>C	p.Val269Leu	p.V269L	ENST00000382592	NM_014572.2	269	Gtg/Ctg																																																																															
CDH1	999	MSKCC	GRCh37	16	68867263	68867264	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0087799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	132	561	0	ENST00000261769.5:c.2512dup	p.Ser838LysfsTer7	p.S838Kfs*7	ENST00000261769	NM_004360.3	837	gga/ggAa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0087922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	27	531	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943632	9943632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	40	414	0	ENST00000330684.3:c.1309C>T	p.Arg437Trp	p.R437W	ENST00000330684	NM_001134407.1	437	Cgg/Tgg																																																																															
RHOA	387	MSKCC	GRCh37	3	49405963	49405963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	18	342	0	ENST00000418115.1:c.175G>A	p.Asp59Asn	p.D59N	ENST00000418115	NM_001664.2	59	Gac/Aac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435151	56435151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	39	521	0	ENST00000407977.2:c.1986G>T	p.Glu662Asp	p.E662D	ENST00000407977		662	gaG/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0087924-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	95	308	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0087924-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	86	436	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112154967	112154968	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0087924-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	81	293	0	ENST00000257430.4:c.1239dup	p.Arg414ThrfsTer5	p.R414Tfs*5	ENST00000257430	NM_000038.5	413	ata/atAa																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2090028	2090028	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs149287105		P-0087924-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	86	412	0	ENST00000219066.1:c.836A>G	p.Asn279Ser	p.N279S	ENST00000219066	NM_002528.5	279	aAt/aGt																																																																															
APC	324	MSKCC	GRCh37	5	112175618	112175618	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0087924-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	88	399	0	ENST00000257430.4:c.4328del	p.Pro1443LeufsTer30	p.P1443Lfs*30	ENST00000257430	NM_000038.5	1443	Cct/ct																																																																															
ROS1	6098	MSKCC	GRCh37	6	117718102	117718102	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087924-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	14	289	0	ENST00000368508.3:c.755C>A	p.Ser252Tyr	p.S252Y	ENST00000368508	NM_002944.2	252	tCc/tAc																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114587	73114595	+	inframe_deletion	In_Frame_Del	DEL	AAAATCAAG	AAAATCAAG	-			P-0087924-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	29	273	0	ENST00000356692.5:c.972_980del	p.Asn324_Glu326del	p.N324_E326del	ENST00000356692		323	aAAAATCAAGaa/aaa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120460319	120460319	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1446995271		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	167	561	5	ENST00000256646.2:c.5996del	p.Asn1999MetfsTer32	p.N1999Mfs*32	ENST00000256646	NM_024408.3	1999	aAt/at																																																																															
DDR2	4921	MSKCC	GRCh37	1	162735793	162735793	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	106	545	0	ENST00000367921.3:c.1102G>A	p.Ala368Thr	p.A368T	ENST00000367921	NM_006182.2	368	Gct/Act																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105978	27105979	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	124	528	0	ENST00000324856.7:c.5591_5592del	p.Glu1864AlafsTer36	p.E1864Afs*36	ENST00000324856	NM_006015.4	1863	acAGag/acag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	218	436	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692995	89692995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	95	430	0	ENST00000371953.3:c.479C>T	p.Thr160Ile	p.T160I	ENST00000371953	NM_000314.4	160	aCc/aTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	29	172	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	87	396	1	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926270	112926270	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121918457		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	135	397	0	ENST00000351677.2:c.1403C>T	p.Thr468Met	p.T468M	ENST00000351677	NM_002834.3	468	aCg/aTg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	143	459	7	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	74	354	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416542	49416542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	172	567	0	ENST00000301067.7:c.16169G>A	p.Arg5390Gln	p.R5390Q	ENST00000301067	NM_003482.3	5390	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441815	49441816	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs756471180		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	105	470	0	ENST00000301067.7:c.4168dup	p.Ala1390GlyfsTer42	p.A1390Gfs*42	ENST00000301067	NM_003482.3	1390	gca/gGca																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864218	57864218	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	147	633	1	ENST00000228682.2:c.1700del	p.Pro567LeufsTer46	p.P567Lfs*46	ENST00000228682	NM_005269.2	565	ttC/tt																																																																															
B2M	567	MSKCC	GRCh37	15	45003779	45003779	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	124	447	0	ENST00000558401.1:c.35T>G	p.Leu12Arg	p.L12R	ENST00000558401	NM_004048.2	12	cTa/cGa																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	135	532	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858093	9858093	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1064796904		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	120	562	0	ENST00000330684.3:c.3308G>A	p.Arg1103His	p.R1103H	ENST00000330684	NM_001134407.1	1103	cGc/cAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1297203260		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	124	411	0	ENST00000245479.2:c.916del	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120480	70120480	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	149	583	0	ENST00000245479.2:c.1486del	p.Gln496SerfsTer27	p.Q496Sfs*27	ENST00000245479	NM_000346.3	494	agC/ag																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78727981	78727981	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1481790013		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	127	432	0	ENST00000306801.3:c.826C>T	p.Arg276Cys	p.R276C	ENST00000306801	NM_020761.2	276	Cgc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296391	15296391	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770737365		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	155	660	0	ENST00000263388.2:c.2051C>T	p.Pro684Leu	p.P684L	ENST00000263388	NM_000435.2	684	cCg/cTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	73	410	2	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213243	39213243	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	161	568	3	ENST00000402219.2:c.3724del	p.Ser1242ValfsTer37	p.S1242Vfs*37	ENST00000402219	NM_005633.3	1242	Agt/gt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39283850	39283850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	92	417	0	ENST00000402219.2:c.503C>T	p.Ala168Val	p.A168V	ENST00000402219	NM_005633.3	168	gCt/gTt																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46587791	46587791	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	115	444	0	ENST00000263734.3:c.475del	p.Ser159AlafsTer12	p.S159Afs*12	ENST00000263734	NM_001430.4	157	Aaa/aa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46256699	46256699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749607074		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	94	406	1	ENST00000371998.3:c.755G>A	p.Arg252His	p.R252H	ENST00000371998		252	cGc/cAc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732958	30732958	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	145	475	0	ENST00000359013.4:c.1646A>G	p.Asp549Gly	p.D549G	ENST00000359013	NM_001024847.2	549	gAc/gGc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277992	41277992	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	108	572	0	ENST00000349496.5:c.1954+2T>C		p.X652_splice	ENST00000349496	NM_001904.3	652																																																																																
SETD2	29072	MSKCC	GRCh37	3	47164508	47164508	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201756643		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	146	577	0	ENST00000409792.3:c.1618C>T	p.Arg540Ter	p.R540*	ENST00000409792	NM_014159.6	540	Cga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499363	89499363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1317589623		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	125	531	0	ENST00000336596.2:c.2538del	p.Met847TrpfsTer10	p.M847Wfs*10	ENST00000336596	NM_005233.5	845	Ccc/cc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509084	66509085	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	56	403	0	ENST00000273854.3:c.242dup	p.Asn81LysfsTer8	p.N81Kfs*8	ENST00000273854	NM_004439.5	81	aat/aaAt																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	69	353	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112155031	112155032	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	130	428	0	ENST00000257430.4:c.1307dup	p.Asn436LysfsTer8	p.N436Kfs*8	ENST00000257430	NM_000038.5	434	-/A																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31464360	31464360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755033541		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	112	489	0	ENST00000344624.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000344624		853	Cgt/Tgt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	104	486	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	53	365	4	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265522	152265522	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1467954450		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	115	541	0	ENST00000206249.3:c.975del	p.Ile326TyrfsTer17	p.I326Yfs*17	ENST00000206249	NM_000125.3	325	ccG/cc																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839934	27839934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779848426		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	146	619	1	ENST00000328488.2:c.160C>T	p.Arg54Cys	p.R54C	ENST00000328488	NM_003533.2	54	Cgc/Tgc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805787	32805788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1174402903		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	281	589	0	ENST00000374899.4:c.223dup	p.Leu75ProfsTer92	p.L75Pfs*92	ENST00000374899	NM_018833.2	75	ctg/cCtg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2951847	2951847	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868687398		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	146	530	0	ENST00000396946.4:c.3103G>A	p.Glu1035Lys	p.E1035K	ENST00000396946	NM_032415.4	1035	Gaa/Aaa																																																																															
ABL1	25	MSKCC	GRCh37	9	133738370	133738370	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	122	480	0	ENST00000318560.5:c.770A>G	p.Tyr257Cys	p.Y257C	ENST00000318560	NM_005157.4	257	tAc/tGc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2115850	2115850	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs281875186		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	96	508	1	ENST00000349721.2:c.3485G>A	p.Arg1162His	p.R1162H	ENST00000349721	NM_003070.3	1162	cGc/cAc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87636258	87636258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	139	492	0	ENST00000277120.3:c.2423G>A	p.Arg808Gln	p.R808Q	ENST00000277120		808	cGa/cAa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98218623	98218623	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778629		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	57	554	0	ENST00000331920.6:c.3241G>A	p.Val1081Met	p.V1081M	ENST00000331920	NM_000264.3	1081	Gtg/Atg																																																																															
MED12	9968	MSKCC	GRCh37	X	70349689	70349689	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs979229015		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	141	514	0	ENST00000374080.3:c.3851G>A	p.Arg1284His	p.R1284H	ENST00000374080		1284	cGc/cAc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156837970	156837970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	136	537	0	ENST00000524377.1:c.503G>A	p.Gly168Asp	p.G168D	ENST00000524377	NM_002529.3	168	gGc/gAc																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226259080	226259080	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	46	194	0	ENST00000366813.1:c.315del	p.Phe105LeufsTer14	p.F105Lfs*14	ENST00000366813		104	cTt/ct																																																																															
PARP1	142	MSKCC	GRCh37	1	226578127	226578127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	96	484	0	ENST00000366794.5:c.601G>T	p.Gly201Ter	p.G201*	ENST00000366794	NM_001618.3	201	Gga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100492	8100493	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	82	537	0	ENST00000346208.3:c.470dup	p.Pro158AlafsTer145	p.P158Afs*145	ENST00000346208		156	acc/aCcc																																																																															
EED	8726	MSKCC	GRCh37	11	85961339	85961339	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	88	434	0	ENST00000263360.6:c.116A>T	p.Asp39Val	p.D39V	ENST00000263360	NM_003797.3	39	gAt/gTt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552738	18552738	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	96	541	0	ENST00000266497.5:c.2149A>G	p.Thr717Ala	p.T717A	ENST00000266497		717	Aca/Gca																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18656279	18656279	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1213903624		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	117	523	0	ENST00000266497.5:c.2958A>G	p.Ile986Met	p.I986M	ENST00000266497		986	atA/atG																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225892	2225892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	154	532	0	ENST00000326181.6:c.1684G>A	p.Val562Ile	p.V562I	ENST00000326181	NM_032271.2	562	Gtc/Atc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348179	348179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	135	559	0	ENST00000262320.3:c.1327G>A	p.Ala443Thr	p.A443T	ENST00000262320	NM_003502.3	443	Gct/Act																																																																															
NF1	4763	MSKCC	GRCh37	17	29528179	29528179	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	124	461	0	ENST00000358273.4:c.1185+2T>C		p.X395_splice	ENST00000358273	NM_001042492.2	395																																																																																
EZH1	2145	MSKCC	GRCh37	17	40876349	40876349	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	119	487	0	ENST00000428826.2:c.340T>C	p.Trp114Arg	p.W114R	ENST00000428826		114	Tgg/Cgg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39637976	39637976	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	66	437	0	ENST00000262039.4:c.2393T>C	p.Phe798Ser	p.F798S	ENST00000262039	NM_002647.2	798	tTc/tCc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18272778	18272778	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	127	546	0	ENST00000222254.8:c.818G>A	p.Ser273Asn	p.S273N	ENST00000222254	NM_005027.3	273	aGt/aAt																																																																															
UPF1	5976	MSKCC	GRCh37	19	18961619	18961619	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	101	433	0	ENST00000262803.5:c.752A>G	p.Gln251Arg	p.Q251R	ENST00000262803	NM_002911.3	251	cAg/cGg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403212	213403212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	99	417	0	ENST00000342788.4:c.43G>A	p.Val15Met	p.V15M	ENST00000342788	NM_005235.2	15	Gtg/Atg																																																																															
BARD1	580	MSKCC	GRCh37	2	215645546	215645546	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767208122		P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	133	557	0	ENST00000260947.4:c.1052C>T	p.Thr351Met	p.T351M	ENST00000260947	NM_000465.2	351	aCg/aTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41546072	41546072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	125	568	0	ENST00000263253.7:c.2687A>G	p.Gln896Arg	p.Q896R	ENST00000263253	NM_001429.3	896	cAa/cGa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960042	134960042	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	120	545	0	ENST00000398015.3:c.2399A>T	p.Lys800Met	p.K800M	ENST00000398015	NM_004441.4	800	aAg/aTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153252011	153252011	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	93	462	0	ENST00000281708.4:c.995A>G	p.Glu332Gly	p.E332G	ENST00000281708	NM_033632.3	332	gAa/gGa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295794	1295794	+	upstream_gene_variant	5'Flank	DEL	C	C	-			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	131	559	0				ENST00000310581	NM_198253.2																																																																																	
PLK2	10769	MSKCC	GRCh37	5	57754276	57754276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	142	500	0	ENST00000274289.3:c.575G>A	p.Gly192Glu	p.G192E	ENST00000274289	NM_006622.3	192	gGa/gAa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2985555	2985555	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	109	540	1	ENST00000396946.4:c.256A>G	p.Arg86Gly	p.R86G	ENST00000396946	NM_032415.4	86	Agg/Ggg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2039477	2039477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	117	482	0	ENST00000349721.2:c.367C>T	p.Pro123Ser	p.P123S	ENST00000349721	NM_003070.3	123	Cca/Tca																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942842	44942842	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	109	427	0	ENST00000377967.4:c.3422G>T	p.Ser1141Ile	p.S1141I	ENST00000377967	NM_021140.2	1141	aGc/aTc																																																																															
NADK	65220	MSKCC	GRCh37	1	1696680	1696680	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086147-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			362	169	509	0	ENST00000341426.5:c.166A>T	p.Thr56Ser	p.T56S	ENST00000341426	NM_023018.4	56	Acc/Tcc																																																																															
ATM	472	MSKCC	GRCh37	11	108121744	108121744	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0086147-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			333	107	532	0	ENST00000278616.4:c.1552G>T	p.Glu518Ter	p.E518*	ENST00000278616	NM_000051.3	518	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0086147-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			132	243	325	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
BARD1	580	MSKCC	GRCh37	2	215634036	215634036	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0086147-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	81	407	0	ENST00000260947.4:c.1315G>C	p.Gly439Arg	p.G439R	ENST00000260947	NM_000465.2	439	Ggc/Cgc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153253748	153253748	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0086147-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			228	90	339	0	ENST00000281708.4:c.985G>A	p.Gly329Arg	p.G329R	ENST00000281708	NM_033632.3	329	Ggg/Agg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120467953	120467954	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0086147-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			123	176	558	0	ENST00000256646.2:c.4485dup	p.Cys1496MetfsTer11	p.C1496Mfs*11	ENST00000256646	NM_024408.3	1495	-/A																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429357	78429357	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs958512239		P-0086147-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			113	167	471	1	ENST00000370768.2:c.1085G>T	p.Gly362Val	p.G362V	ENST00000370768	NM_003902.3	362	gGt/gTt																																																																															
TP63	8626	MSKCC	GRCh37	3	189586401	189586401	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086147-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			213	132	508	0	ENST00000264731.3:c.1027del	p.Arg343GlyfsTer45	p.R343Gfs*45	ENST00000264731	NM_003722.4	342	gCc/gc																																																																															
FYN	2534	MSKCC	GRCh37	6	112041083	112041083	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086147-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			293	166	509	0	ENST00000368678.4:c.172G>T	p.Gly58Cys	p.G58C	ENST00000368678		58	Ggc/Tgc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0087479-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	120	306	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163720	32163720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087479-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			274	35	298	0	ENST00000375023.3:c.5506G>C	p.Glu1836Gln	p.E1836Q	ENST00000375023	NM_004557.3	1836	Gag/Cag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610415	10610415	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087479-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	150	346	0	ENST00000171111.5:c.295G>T	p.Val99Leu	p.V99L	ENST00000171111	NM_203500.1	99	Gtg/Ttg																																																																															
ATRX	546	MSKCC	GRCh37	X	76891451	76891451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087479-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			142	113	129	0	ENST00000373344.5:c.4654G>T	p.Val1552Phe	p.V1552F	ENST00000373344	NM_000489.3	1552	Gtt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578516	7578531	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCAGTTGGCAAAAC	GGCCAGTTGGCAAAAC	-			P-0087479-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			234	188	371	0	ENST00000269305.4:c.399_414del	p.Met133IlefsTer32	p.M133Ifs*32	ENST00000269305	NM_001126112.2	133	atGTTTTGCCAACTGGCC/at																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30648405	30648405	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0087479-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			177	78	258	0	ENST00000359013.4:c.30G>A	p.Trp10Ter	p.W10*	ENST00000359013	NM_001024847.2	10	tgG/tgA																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618658	37618658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	94	550	0	ENST00000447079.4:c.334C>T	p.Arg112Cys	p.R112C	ENST00000447079	NM_015083.1	112	Cgt/Tgt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619354	37619354	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	92	448	0	ENST00000447079.4:c.1030C>G	p.Arg344Gly	p.R344G	ENST00000447079	NM_015083.1	344	Cgg/Ggg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618776	37618776	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0087625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	85	494	0	ENST00000447079.4:c.452C>G	p.Ser151Ter	p.S151*	ENST00000447079	NM_015083.1	151	tCa/tGa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619016	37619017	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0087625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	92	514	0	ENST00000447079.4:c.692_693delinsAT	p.Ser231Tyr	p.S231Y	ENST00000447079	NM_015083.1	231	tCC/tAT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782620		P-0087691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	134	508	0	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0087691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	66	428	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99486166	99486166	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1287599859		P-0087691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	77	377	0	ENST00000268035.6:c.3472C>T	p.Arg1158Ter	p.R1158*	ENST00000268035	NM_000875.3	1158	Cga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048162	180048162	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773021479		P-0087691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	82	489	0	ENST00000261937.6:c.2111C>T	p.Ala704Val	p.A704V	ENST00000261937	NM_182925.4	704	gCg/gTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8331669	8331669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	75	352	0	ENST00000356435.5:c.5447C>A	p.Ser1816Tyr	p.S1816Y	ENST00000356435		1816	tCc/tAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0087691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	66	262	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MDM4	4194	MSKCC	GRCh37	1	204515962	204515962	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	45	262	0	ENST00000367182.3:c.860C>G	p.Ser287Cys	p.S287C	ENST00000367182	NM_001278516.1	287	tCt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112173874	112173889	+	frameshift_variant	Frame_Shift_Del	DEL	CAACTACCATCCAGCA	CAACTACCATCCAGCA	-			P-0087691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	65	369	0	ENST00000257430.4:c.2583_2598del	p.Asn862GlnfsTer49	p.N862Qfs*49	ENST00000257430	NM_000038.5	861	ggCAACTACCATCCAGCA/gg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562999	176562999	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0087691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	22	360	0	ENST00000439151.2:c.895T>G	p.Ser299Ala	p.S299A	ENST00000439151	NM_022455.4	299	Tca/Gca																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978521	70978521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	243	348	0	ENST00000276594.2:c.1132G>T	p.Val378Leu	p.V378L	ENST00000276594	NM_024504.3	378	Gtg/Ttg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967714	18967714	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0087870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	217	281	0	ENST00000262803.5:c.1853T>G	p.Val618Gly	p.V618G	ENST00000262803	NM_002911.3	618	gTg/gGg																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0087871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	167	274	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0087878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	203	606	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0087878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	163	590	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349194	11349194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	177	439	0	ENST00000332029.2:c.142C>T	p.Pro48Ser	p.P48S	ENST00000332029	NM_003745.1	48	Ccg/Tcg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412231	63412231	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			763	59	726	0	ENST00000330258.3:c.936G>T	p.Leu312Phe	p.L312F	ENST00000330258	NM_152424.3	312	ttG/ttT																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0087879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			51	51	437	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0087879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	56	636	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399191	139399191	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1243453790		P-0087879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	68	459	0	ENST00000277541.6:c.4952C>T	p.Ser1651Leu	p.S1651L	ENST00000277541	NM_017617.3	1651	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs786201057		P-0087879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			58	98	550	0	ENST00000269305.4:c.374C>A	p.Thr125Lys	p.T125K	ENST00000269305	NM_001126112.2	125	aCg/aAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0087879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			46	117	403	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488723	212488723	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0087879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	14	677	0	ENST00000342788.4:c.2126A>C	p.Gln709Pro	p.Q709P	ENST00000342788	NM_005235.2	709	cAa/cCa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11297916	11297916	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	94	474	0	ENST00000361445.4:c.2192G>T	p.Arg731Leu	p.R731L	ENST00000361445	NM_004958.3	731	cGc/cTc																																																																															
GAB2	9846	MSKCC	GRCh37	11	77938080	77938080	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0087879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	106	537	0	ENST00000361507.4:c.638A>C	p.Gln213Pro	p.Q213P	ENST00000361507	NM_080491.2	213	cAg/cCg																																																																															
FH	2271	MSKCC	GRCh37	1	241682970	241682970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201887750		P-0087882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	105	486	0	ENST00000366560.3:c.53C>T	p.Pro18Leu	p.P18L	ENST00000366560	NM_000143.3	18	cCa/cTa																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0087882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	152	605	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057991	27057991	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0087882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	66	617	0	ENST00000324856.7:c.1699C>T	p.Gln567Ter	p.Q567*	ENST00000324856	NM_006015.4	567	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7576895	7576896	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0087882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	203	697	0	ENST00000269305.4:c.950dup	p.Pro318AlafsTer19	p.P318Afs*19	ENST00000269305	NM_001126112.2	317	cag/caAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76891469	76891469	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0087882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	193	463	0	ENST00000373344.5:c.4636A>G	p.Lys1546Glu	p.K1546E	ENST00000373344	NM_000489.3	1546	Aaa/Gaa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508007	106508007	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0087882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			71	280	495	0	ENST00000359195.3:c.1A>G	p.Met1?	p.M1?	ENST00000359195	NM_002649.2	1	Atg/Gtg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15960917	15960918	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0087882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	192	546	1	ENST00000268712.3:c.6302dup	p.Tyr2101Ter	p.Y2101*	ENST00000268712	NM_006311.3	2101	tac/taAc																																																																															
APC	324	MSKCC	GRCh37	5	112128142	112128143	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GC	GC	TT			P-0087882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	114	381	0	ENST00000257430.4:c.646-1_646delinsTT		p.X216_splice	ENST00000257430	NM_000038.5	216																																																																																
SOX9	6662	MSKCC	GRCh37	17	70120388	70120388	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	GA			P-0087882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	199	628	0	ENST00000245479.2:c.1390delinsGA	p.Ser464AspfsTer114	p.S464Dfs*114	ENST00000245479	NM_000346.3	464	Tcc/GAcc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0087883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	99	398	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs876659675		P-0087883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	122	428	0	ENST00000269305.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTc/aCc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0087883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	119	478	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0087883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			67	87	254	0	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187847	11187847	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	97	491	0	ENST00000361445.4:c.6050T>C	p.Ile2017Thr	p.I2017T	ENST00000361445	NM_004958.3	2017	aTc/aCc																																																																															
APC	324	MSKCC	GRCh37	5	112174384	112174384	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0087883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	70	503	0	ENST00000257430.4:c.3093T>A	p.Tyr1031Ter	p.Y1031*	ENST00000257430	NM_000038.5	1031	taT/taA																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212495203	212495203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	46	447	0	ENST00000342788.4:c.2063G>C	p.Arg688Thr	p.R688T	ENST00000342788	NM_005235.2	688	aGa/aCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0087883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	93	285	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112164585	112164585	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs398123116		P-0087909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	95	415	0	ENST00000257430.4:c.1659G>A	p.Trp553Ter	p.W553*	ENST00000257430	NM_000038.5	553	tgG/tgA																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472460	88472460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	123	513	0	ENST00000360948.2:c.2095G>A	p.Gly699Ser	p.G699S	ENST00000360948	NM_001012338.2	699	Ggc/Agc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099981	157099982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGC	rs1296517130		P-0087909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	52	535	0	ENST00000346085.5:c.942_944dup	p.Gly319dup	p.G319dup	ENST00000346085	NM_020732.3	319	-/GGC																																																																															
AR	367	MSKCC	GRCh37	X	66863108	66863108	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1402718521		P-0087909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			66	221	246	0	ENST00000374690.3:c.1627G>T	p.Ala543Ser	p.A543S	ENST00000374690	NM_000044.3	543	Gcc/Tcc																																																																															
B2M	567	MSKCC	GRCh37	15	45003766	45003766	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs369474839		P-0087909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	49	416	0	ENST00000558401.1:c.22G>C	p.Ala8Pro	p.A8P	ENST00000558401	NM_004048.2	8	Gct/Cct																																																																															
CASP8	841	MSKCC	GRCh37	2	202137388	202137388	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0087909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	19	507	0	ENST00000358485.4:c.616G>T	p.Glu206Ter	p.E206*	ENST00000358485	NM_001080125.1	206	Gag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076881	41076881	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0087909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	43	364	0	ENST00000373198.4:c.1539T>A	p.Asn513Lys	p.N513K	ENST00000373198	NM_133170.3	513	aaT/aaA																																																																															
RAD50	10111	MSKCC	GRCh37	5	131976442	131976442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	120	517	0	ENST00000265335.6:c.3697C>T	p.Pro1233Ser	p.P1233S	ENST00000265335		1233	Cca/Tca																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026749	48026752	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0087909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	107	490	0	ENST00000234420.5:c.1630_1633del	p.Glu544LysfsTer26	p.E544Kfs*26	ENST00000234420	NM_000179.2	543	AAAGaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0085182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	19	449	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0085182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	12	320	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105712	27105712	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0087584-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			434	72	580	0	ENST00000324856.7:c.5323G>T	p.Glu1775Ter	p.E1775*	ENST00000324856	NM_006015.4	1775	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578219	7578220	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0087584-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			408	85	556	0	ENST00000269305.4:c.629dup	p.Asn210LysfsTer6	p.N210Kfs*6	ENST00000269305	NM_001126112.2	210	aac/aaAc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256641	19256641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087584-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			324	23	430	0	ENST00000162023.5:c.1072C>T	p.Arg358Cys	p.R358C	ENST00000162023		358	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0087584-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			282	69	302	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444684	49444684	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0087682-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			865	63	502	0	ENST00000301067.7:c.2782C>T	p.Gln928Ter	p.Q928*	ENST00000301067	NM_003482.3	928	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992598	72992598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087682-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			545	187	408	0	ENST00000268489.5:c.1447G>A	p.Glu483Lys	p.E483K	ENST00000268489	NM_006885.3	483	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577016	7577017	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0087682-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			480	260	446	0	ENST00000269305.4:c.919+2dup		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49446805	49446806	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0087682-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			706	141	426	0	ENST00000301067.7:c.1004_1005del	p.Pro335GlnfsTer6	p.P335Qfs*6	ENST00000301067	NM_003482.3	335	cCC/c																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740761	145740761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087682-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			648	233	549	0	ENST00000428558.2:c.1339G>A	p.Asp447Asn	p.D447N	ENST00000428558	NM_004260.3	447	Gac/Aac																																																																															
MALT1	10892	MSKCC	GRCh37	18	56414688	56414688	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087682-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			403	25	292	0	ENST00000348428.3:c.2089G>C	p.Asp697His	p.D697H	ENST00000348428	NM_006785.3	697	Gat/Cat																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0087687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	62	315	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0087687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	135	437	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230486817	230486817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	49	368	0	ENST00000525115.1:c.574G>A	p.Asp192Asn	p.D192N	ENST00000525115		192	Gat/Aat																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934330	39934330	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0087687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	62	418	0	ENST00000378444.4:c.269A>T	p.Tyr90Phe	p.Y90F	ENST00000378444	NM_001123385.1	90	tAt/tTt																																																																															
TERT	7015	MSKCC	GRCh37	5	1293475	1293475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	146	364	0	ENST00000310581.5:c.1526C>A	p.Thr509Lys	p.T509K	ENST00000310581	NM_198253.2	509	aCg/aAg																																																																															
ATM	472	MSKCC	GRCh37	11	108124708	108124708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	66	412	0	ENST00000278616.4:c.2066C>T	p.Ser689Leu	p.S689L	ENST00000278616	NM_000051.3	689	tCa/tTa																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206652312	206652312	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0087687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	131	463	0	ENST00000367120.3:c.1019A>C	p.His340Pro	p.H340P	ENST00000367120	NM_014002.3	340	cAc/cCc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18715656	18715656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	204	342	0	ENST00000266497.5:c.3487G>A	p.Glu1163Lys	p.E1163K	ENST00000266497		1163	Gag/Aag																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894932	101894932	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	153	387	0	ENST00000374994.4:c.485A>G	p.Glu162Gly	p.E162G	ENST00000374994	NM_004612.2	162	gAg/gGg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193104547	193104547	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	38	316	0	ENST00000367435.3:c.334G>C	p.Ala112Pro	p.A112P	ENST00000367435	NM_024529.4	112	Gct/Cct																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468042	50468042	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0087687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	40	456	0	ENST00000331340.3:c.1277T>C	p.Leu426Pro	p.L426P	ENST00000331340	NM_006060.4	426	cTg/cCg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0087741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	82	408	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0087741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	193	559	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0087741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	56	528	1	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821601	72821618	+	inframe_deletion	In_Frame_Del	DEL	CCGCCGCCGCCGCCGCCA	CCGCCGCCGCCGCCGCCA	-	rs778016374		P-0087741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	42	615	0	ENST00000268489.5:c.10557_10574del	p.Gly3522_Gly3527del	p.G3522_G3527del	ENST00000268489	NM_006885.3	3519	ggTGGCGGCGGCGGCGGCGGc/ggc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748068	72748068	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	126	572	1	ENST00000357731.5:c.110G>C	p.Ser37Thr	p.S37T	ENST00000357731	NM_173808.2	37	aGt/aCt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123784	11123792	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCTCGTGA	CTCTCGTGA	-			P-0087741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	133	462	0	ENST00000344626.4:c.2434_2438+4del		p.X812_splice	ENST00000344626	NM_003072.3	812																																																																																
ATM	472	MSKCC	GRCh37	11	108159810	108159810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			16	12	91	0	ENST00000278616.4:c.4216G>A	p.Glu1406Lys	p.E1406K	ENST00000278616	NM_000051.3	1406	Gaa/Aaa																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30253771	30253771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	262	469	0	ENST00000307677.4:c.683C>T	p.Ser228Leu	p.S228L	ENST00000307677	NM_138578.1	228	tCa/tTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0087803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	11	373	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0087803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	119	496	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0087803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	26	180	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112173299	112173299	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0087803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	46	346	0	ENST00000257430.4:c.2008A>T	p.Lys670Ter	p.K670*	ENST00000257430	NM_000038.5	670	Aaa/Taa																																																																															
CDH1	999	MSKCC	GRCh37	16	68844175	68844175	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0087803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	135	419	0	ENST00000261769.5:c.763C>T	p.Gln255Ter	p.Q255*	ENST00000261769	NM_004360.3	255	Cag/Tag																																																																															
REL	5966	MSKCC	GRCh37	2	61149057	61149057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	68	568	1	ENST00000295025.8:c.1247C>T	p.Ala416Val	p.A416V	ENST00000295025	NM_002908.2	416	gCc/gTc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519803		P-0087804-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	156	519	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508389	106508389	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758375337		P-0087804-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	122	537	0	ENST00000359195.3:c.383C>T	p.Thr128Met	p.T128M	ENST00000359195	NM_002649.2	128	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0087804-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	266	491	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0087804-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	82	259	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573609	48573609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087804-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	87	526	0	ENST00000342988.3:c.193G>A	p.Gly65Arg	p.G65R	ENST00000342988	NM_005359.5	65	Gga/Aga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0086456-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	445	493	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0086456-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			535	381	613	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38632052	38632052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086456-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			155	39	393	0	ENST00000299084.4:c.538G>A	p.Asp180Asn	p.D180N	ENST00000299084	NM_152594.2	180	Gat/Aat																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197160	26197160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086456-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			936	137	782	0	ENST00000356476.2:c.319G>A	p.Asp107Asn	p.D107N	ENST00000356476		107	Gac/Aac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717695	89717696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0087716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	179	349	0	ENST00000371953.3:c.723dup	p.Glu242Ter	p.E242*	ENST00000371953	NM_000314.4	240	-/T																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56480320	56480320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	280	447	0	ENST00000267101.3:c.427C>A	p.Leu143Met	p.L143M	ENST00000267101	NM_001982.3	143	Ctg/Atg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016570	12016570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	208	367	0	ENST00000353533.5:c.706C>T	p.Leu236Phe	p.L236F	ENST00000353533	NM_003010.3	236	Ctt/Ttt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161221	56161221	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781300314		P-0087716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	195	323	0	ENST00000399503.3:c.1090C>T	p.Arg364Trp	p.R364W	ENST00000399503	NM_005921.1	364	Cgg/Tgg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591118	67591126	+	inframe_deletion	In_Frame_Del	DEL	ATCCAGCTG	ATCCAGCTG	-			P-0087716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	184	387	0	ENST00000274335.5:c.1712_1720del	p.Ile571_Leu573del	p.I571_L573del	ENST00000274335		571	ATCCAGCTG/-																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419884	152419884	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0087716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	123	450	0	ENST00000206249.3:c.1571A>T	p.His524Leu	p.H524L	ENST00000206249	NM_000125.3	524	cAt/cTt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56167853	56167853	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0087716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	134	439	0	ENST00000399503.3:c.1418C>A	p.Ser473Ter	p.S473*	ENST00000399503	NM_005921.1	473	tCa/tAa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913324		P-0087718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	32	409	0	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678619	88678619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	21	355	0	ENST00000360948.2:c.917G>T	p.Arg306Leu	p.R306L	ENST00000360948	NM_001012338.2	306	cGt/cTt																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729175	66729175	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121908596		P-0087718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	39	448	0	ENST00000307102.5:c.383G>T	p.Gly128Val	p.G128V	ENST00000307102	NM_002755.3	128	gGc/gTc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423399	47423399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	50	403	0	ENST00000404338.3:c.1467G>T	p.Lys489Asn	p.K489N	ENST00000404338	NM_004491.4	489	aaG/aaT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636805	8636805	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1182822834		P-0087718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	37	398	0	ENST00000356435.5:c.104G>T	p.Gly35Val	p.G35V	ENST00000356435		35	gGg/gTg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225368540	225368540	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0087718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	30	311	0	ENST00000264414.4:c.1207-1G>T		p.X403_splice	ENST00000264414	NM_003590.4	403																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81888088	81888088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	42	345	0	ENST00000359376.3:c.233A>G	p.Asn78Ser	p.N78S	ENST00000359376	NM_002661.3	78	aAc/aGc																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17382450	17382451	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AT			P-0087718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	25	301	0	ENST00000359435.4:c.330_331delinsAT	p.Glu111Ter	p.E111*	ENST00000359435	NM_001033549.1	110	ctGGag/ctATag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63662147	63662147	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	53	426	0	ENST00000279873.7:c.251A>G	p.Gln84Arg	p.Q84R	ENST00000279873	NM_032199.2	84	cAg/cGg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30314667	30314667	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	36	408	0	ENST00000262643.3:c.1216G>T	p.Gly406Trp	p.G406W	ENST00000262643	NM_001238.2	406	Ggg/Tgg																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944863	31944863	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0087718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	39	323	0	ENST00000340398.3:c.238A>T	p.Thr80Ser	p.T80S	ENST00000340398	NM_001013699.2	80	Act/Tct																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731031	162731031	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	38	406	0	ENST00000367921.3:c.886G>T	p.Val296Leu	p.V296L	ENST00000367921	NM_006182.2	296	Gtg/Ttg																																																																															
BRAF	673	MSKCC	GRCh37	7	140501347	140501347	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	37	238	0	ENST00000288602.6:c.725T>C	p.Phe242Ser	p.F242S	ENST00000288602	NM_004333.4	242	tTt/tCt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11319339	11319339	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0087718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	39	391	0	ENST00000361445.4:c.128A>T	p.Glu43Val	p.E43V	ENST00000361445	NM_004958.3	43	gAg/gTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341760	8341760	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	45	416	0	ENST00000356435.5:c.4880C>A	p.Ala1627Asp	p.A1627D	ENST00000356435		1627	gCc/gAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467643	66467643	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	38	358	0	ENST00000273854.3:c.626G>T	p.Gly209Val	p.G209V	ENST00000273854	NM_004439.5	209	gGa/gTa																																																																															
TERT	7015	MSKCC	GRCh37	5	1272395	1272395	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0087718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	37	337	0	ENST00000310581.5:c.2287G>T	p.Val763Phe	p.V763F	ENST00000310581	NM_198253.2	763	Gtc/Ttc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660700	227660700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	35	520	0	ENST00000305123.5:c.2755C>T	p.Pro919Ser	p.P919S	ENST00000305123	NM_005544.2	919	Cct/Tct																																																																															
ABL1	25	MSKCC	GRCh37	9	133755981	133755981	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	55	397	0	ENST00000318560.5:c.1608G>T	p.Arg536Ser	p.R536S	ENST00000318560	NM_005157.4	536	agG/agT																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675056	40675056	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	40	367	0	ENST00000249776.8:c.20C>G	p.Pro7Arg	p.P7R	ENST00000249776	NM_033286.3	7	cCg/cGg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242800978	242800978	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0087718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	31	343	0	ENST00000334409.5:c.13C>T	p.Gln5Ter	p.Q5*	ENST00000334409	NM_005018.2	5	Cag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039413	47039415	+	frameshift_variant	Frame_Shift_Del	DEL	GCC	GCC	TT			P-0087718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	36	198	0	ENST00000329236.7:c.805_807delinsTT	p.Ala269PhefsTer138	p.A269Ffs*138	ENST00000329236	NM_001204466.1	269	GCC/TT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928072	178928098	+	inframe_deletion	In_Frame_Del	DEL	TGGATTAGAAGATTTGCTGAACCCTAT	TGGATTAGAAGATTTGCTGAACCCTAT	-			P-0087722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	135	352	0	ENST00000263967.3:c.1353_1379del	p.Leu452_Gly460del	p.L452_G460del	ENST00000263967	NM_006218.2	450	caTGGATTAGAAGATTTGCTGAACCCTATt/cat																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437376	110437376	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776945626		P-0087722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	48	398	1	ENST00000375856.3:c.1025C>T	p.Ser342Leu	p.S342L	ENST00000375856	NM_003749.2	342	tCg/tTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68849417	68849417	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0087722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	137	371	0	ENST00000261769.5:c.1321-1G>A		p.X441_splice	ENST00000261769	NM_004360.3	441																																																																																
ATM	472	MSKCC	GRCh37	11	108106508	108106508	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0087722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	78	373	0	ENST00000278616.4:c.443A>T	p.Asp148Val	p.D148V	ENST00000278616	NM_000051.3	148	gAc/gTc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114148	115114149	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0087722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	209	528	0	ENST00000257566.3:c.1068dup	p.Ala357ArgfsTer18	p.A357Rfs*18	ENST00000257566	NM_016569.3	356	-/C																																																																															
BRAF	673	MSKCC	GRCh37	7	140453148	140453148	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs397507483		P-0087732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	51	378	0	ENST00000288602.6:c.1787G>T	p.Gly596Val	p.G596V	ENST00000288602	NM_004333.4	596	gGt/gTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247294	153247294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	65	513	0	ENST00000281708.4:c.1508C>T	p.Ala503Val	p.A503V	ENST00000281708	NM_033632.3	503	gCa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0087732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	27	320	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652236	48652236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	54	482	0	ENST00000376670.3:c.907C>A	p.Gln303Lys	p.Q303K	ENST00000376670	NM_002049.3	303	Cag/Aag																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115280168	115280168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	42	336	0	ENST00000438362.2:c.464C>T	p.Pro155Leu	p.P155L	ENST00000438362	NM_001242891.1	155	cCt/cTt																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735365	204735365	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0087732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	51	558	0	ENST00000302823.3:c.166T>A	p.Phe56Ile	p.F56I	ENST00000302823	NM_005214.4	56	Ttt/Att																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460490	8460490	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	37	467	0	ENST00000356435.5:c.3796G>T	p.Gly1266Cys	p.G1266C	ENST00000356435		1266	Ggc/Tgc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933693	39933693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			728	52	592	0	ENST00000378444.4:c.906C>A	p.His302Gln	p.H302Q	ENST00000378444	NM_001123385.1	302	caC/caA																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0087736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	12	524	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845583	72845583	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769603301		P-0087736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	39	493	0	ENST00000268489.5:c.3757C>T	p.Arg1253Cys	p.R1253C	ENST00000268489	NM_006885.3	1253	Cgc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992630	72992630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	24	497	0	ENST00000268489.5:c.1415C>A	p.Ala472Glu	p.A472E	ENST00000268489	NM_006885.3	472	gCg/gAg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39262364	39262364	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			58	10	271	0	ENST00000402219.2:c.1063G>C	p.Glu355Gln	p.E355Q	ENST00000402219	NM_005633.3	355	Gaa/Caa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134825410	134825410	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	16	351	0	ENST00000398015.3:c.926G>C	p.Arg309Pro	p.R309P	ENST00000398015	NM_004441.4	309	cGa/cCa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860763	151860763	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0087736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	19	496	0	ENST00000262189.6:c.9899del	p.Ser3300ThrfsTer61	p.S3300Tfs*61	ENST00000262189	NM_170606.2	3300	aGc/ac																																																																															
EZH2	2146	MSKCC	GRCh37	7	148525883	148525883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	16	331	0	ENST00000320356.2:c.574G>T	p.Asp192Tyr	p.D192Y	ENST00000320356	NM_004456.4	192	Gat/Tat																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468455	89468455	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	20	349	0	ENST00000336596.2:c.1989G>C	p.Gln663His	p.Q663H	ENST00000336596	NM_005233.5	663	caG/caC																																																																															
PGR	5241	MSKCC	GRCh37	11	100933338	100933338	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0087736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			94	17	362	0	ENST00000325455.5:c.2052T>G	p.Ile684Met	p.I684M	ENST00000325455	NM_001202474.3	684	atT/atG																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134515	2134515	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375785710		P-0087736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	32	628	0	ENST00000219476.3:c.4292C>T	p.Ser1431Leu	p.S1431L	ENST00000219476	NM_000548.3	1431	tCg/tTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42794662	42794662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	31	415	0	ENST00000575354.2:c.1742C>A	p.Pro581Gln	p.P581Q	ENST00000575354	NM_015125.3	581	cCa/cAa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660777	227660777	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	24	466	0	ENST00000305123.5:c.2678C>G	p.Pro893Arg	p.P893R	ENST00000305123	NM_005544.2	893	cCg/cGg																																																																															
INSR	3643	MSKCC	GRCh37	19	7117292	7117292	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	31	435	0	ENST00000302850.5:c.3924G>C	p.Glu1308Asp	p.E1308D	ENST00000302850	NM_000208.2	1308	gaG/gaC																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38942964	38942964	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	18	252	0	ENST00000357387.3:c.5023G>C	p.Glu1675Gln	p.E1675Q	ENST00000357387	NM_152756.3	1675	Gaa/Caa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123181245	123181245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	21	176	0	ENST00000218089.9:c.709C>T	p.Leu237Phe	p.L237F	ENST00000218089	NM_001042749.1	237	Ctt/Ttt																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42848509	42848511	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0087737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	34	351	0	ENST00000398585.3:c.831_833del	p.Cys278del	p.C278del	ENST00000398585	NM_001135099.1	277	cgCTGt/cgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434851	49434851	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1460481305		P-0087742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			822	88	764	0	ENST00000301067.7:c.6702del	p.Arg2235AspfsTer29	p.R2235Dfs*29	ENST00000301067	NM_003482.3	2234	ccC/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0087742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	96	629	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
TERT	7015	MSKCC	GRCh37	5	1293833	1293833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			924	85	803	0	ENST00000310581.5:c.1168C>T	p.Arg390Trp	p.R390W	ENST00000310581	NM_198253.2	390	Cgg/Tgg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609902	117609902	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781588795		P-0087742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	66	421	0	ENST00000368508.3:c.6797C>T	p.Thr2266Met	p.T2266M	ENST00000368508	NM_002944.2	2266	aCg/aTg																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166140	118166140	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			761	62	710	0	ENST00000369448.3:c.650G>C	p.Gly217Ala	p.G217A	ENST00000369448	NM_017709.3	217	gGg/gCg																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230468768	230468768	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	63	534	0	ENST00000525115.1:c.888G>C	p.Leu296Phe	p.L296F	ENST00000525115		296	ttG/ttC																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285862	46285862	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0087742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	46	430	0	ENST00000334344.6:c.5130T>G	p.Ser1710Arg	p.S1710R	ENST00000334344	NM_152641.2	1710	agT/agG																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041683	29041683	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	102	368	0	ENST00000282397.4:c.136G>T	p.Gly46Cys	p.G46C	ENST00000282397	NM_002019.4	46	Ggc/Tgc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2164209	2164209	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0087742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	42	392	0	ENST00000398665.3:c.26T>G	p.Leu9Arg	p.L9R	ENST00000398665	NM_032482.2	9	cTg/cGg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2213537	2213537	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0087742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	63	557	0	ENST00000398665.3:c.1558-1G>A		p.X520_splice	ENST00000398665	NM_032482.2	520																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212248736	212248736	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1417085142		P-0087742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	51	440	0	ENST00000342788.4:c.3531T>A	p.Asn1177Lys	p.N1177K	ENST00000342788	NM_005235.2	1177	aaT/aaA																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53253990	53253990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	56	572	0	ENST00000375401.3:c.82C>T	p.Leu28Phe	p.L28F	ENST00000375401	NM_004187.3	28	Ctt/Ttt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0087771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	16	348	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986657	36986727	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAAGGCCGGCGCCACCGCTGCCCACGGAGATGGCCGCTGCCGCCGCCTGCGCGGCCTGCGCCTGGTGCT	GCCAAGGCCGGCGCCACCGCTGCCCACGGAGATGGCCGCTGCCGCCGCCTGCGCGGCCTGCGCCTGGTGCT	-			P-0087771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	26	565	0	ENST00000354822.5:c.962_1032del	p.Gln321ArgfsTer94	p.Q321Rfs*94	ENST00000354822	NM_001079668.2	321	cAGCACCAGGCGCAGGCCGCGCAGGCGGCGGCAGCGGCCATCTCCGTGGGCAGCGGTGGCGCCGGCCTTGGC/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0076896-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			731	36	619	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0076896-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			370	11	267	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs786201838		P-0086096-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			127	433	431	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																															
CIC	23152	MSKCC	GRCh37	19	42799231	42799231	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1251828335		P-0086096-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			94	259	259	0	ENST00000575354.2:c.4715C>T	p.Ala1572Val	p.A1572V	ENST00000575354	NM_015125.3	1572	gCc/gTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602767	10602767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086096-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			128	389	362	0	ENST00000171111.5:c.811G>T	p.Val271Leu	p.V271L	ENST00000171111	NM_203500.1	271	Gtg/Ttg																																																																															
STK11	6794	MSKCC	GRCh37	19	1218446	1218447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0086096-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			115	253	310	0	ENST00000326873.7:c.326dup	p.Asn109LysfsTer54	p.N109Kfs*54	ENST00000326873	NM_000455.4	107	-/A																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971035	21971035	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1339792331		P-0086096-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			88	262	298	0	ENST00000304494.5:c.323A>T	p.Asp108Val	p.D108V	ENST00000304494	NM_000077.4	108	gAt/gTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862712	9862712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086096-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			221	149	239	0	ENST00000330684.3:c.2591G>A	p.Ser864Asn	p.S864N	ENST00000330684	NM_001134407.1	864	aGc/aAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0086096-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			37	188	177	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28908189	28908189	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086096-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			128	85	243	0	ENST00000282397.4:c.2566del	p.Arg856GlyfsTer5	p.R856Gfs*5	ENST00000282397	NM_002019.4	856	Cgg/gg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045499	47045502	+	frameshift_variant	Frame_Shift_Del	DEL	AGAA	AGAA	-			P-0086096-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			116	228	429	0	ENST00000329236.7:c.2233_2236del	p.Glu745SerfsTer23	p.E745Sfs*23	ENST00000329236	NM_001204466.1	744	agAGAA/ag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198260909	198260910	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0086096-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			206	126	292	0	ENST00000335508.6:c.3409_3410delinsTT	p.Arg1137Leu	p.R1137L	ENST00000335508	NM_012433.2	1137	AGa/TTa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688771	47688771	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086096-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			367	79	253	0	ENST00000347630.2:c.529A>T	p.Asn177Tyr	p.N177Y	ENST00000347630	NM_001007230.1	177	Aac/Tac																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72891506	72891506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086096-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			310	202	279	0	ENST00000325599.8:c.256G>A	p.Glu86Lys	p.E86K	ENST00000325599	NM_018130.2	86	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295590	1295590	+	upstream_gene_variant	5'Flank	SNP	C	C	T	rs964396448		P-0086096-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			311	226	401	0				ENST00000310581	NM_198253.2																																																																																	
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0087600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	200	192	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0087600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	135	202	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0087601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	161	570	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
TET1	80312	MSKCC	GRCh37	10	70333863	70333863	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs750883311		P-0087601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	58	557	0	ENST00000373644.4:c.1768C>T	p.Arg590Ter	p.R590*	ENST00000373644	NM_030625.2	590	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993903	72993903	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751544438		P-0087601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	60	563	0	ENST00000268489.5:c.142G>A	p.Gly48Arg	p.G48R	ENST00000268489	NM_006885.3	48	Ggg/Agg																																																																															
MED12	9968	MSKCC	GRCh37	X	70344186	70344186	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	49	396	0	ENST00000374080.3:c.1922C>A	p.Ala641Asp	p.A641D	ENST00000374080		641	gCc/gAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539369	187539369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	133	565	0	ENST00000441802.2:c.8371G>A	p.Ala2791Thr	p.A2791T	ENST00000441802	NM_005245.3	2791	Gct/Act																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500537	99500543	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGCCG	AAGGCCG	-			P-0087601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	69	673	0	ENST00000268035.6:c.3971_3977del	p.Lys1324ArgfsTer24	p.K1324Rfs*24	ENST00000268035	NM_000875.3	1324	AAGGCCGag/ag																																																																															
MED12	9968	MSKCC	GRCh37	X	70343078	70343078	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0087601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	89	446	0	ENST00000374080.3:c.1617+2T>C		p.X539_splice	ENST00000374080		539																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178928080	178928106	+	inframe_deletion	In_Frame_Del	DEL	AAGATTTGCTGAACCCTATTGGTGTTA	AAGATTTGCTGAACCCTATTGGTGTTA	-			P-0087601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	162	370	0	ENST00000263967.3:c.1358_1384del	p.Glu453_Thr462delinsAla	p.E453_T462delinsA	ENST00000263967	NM_006218.2	453	gAAGATTTGCTGAACCCTATTGGTGTTAct/gct																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871203	12871203	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0087601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	90	430	0	ENST00000228872.4:c.431del	p.Leu144Ter	p.L144*	ENST00000228872	NM_004064.3	144	Tta/ta																																																																															
PAK1	5058	MSKCC	GRCh37	11	77070041	77070058	+	inframe_deletion	In_Frame_Del	DEL	TCTCAGACACAGCCTTCA	TCTCAGACACAGCCTTCA	-			P-0087601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	70	452	0	ENST00000356341.3:c.482_499del	p.Val161_Thr167delinsAla	p.V161_T167delinsA	ENST00000356341	NM_002576.4	161	gTGAAGGCTGTGTCTGAGAct/gct																																																																															
CCND1	595	MSKCC	GRCh37	11	69465893	69465893	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0087601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	63	401	0	ENST00000227507.2:c.731T>G	p.Leu244Arg	p.L244R	ENST00000227507	NM_053056.2	244	cTc/cGc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0087602-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	140	511	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0087602-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	76	337	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852217		P-0087602-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	174	272	0	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570260	87570260	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777251032		P-0087602-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	41	462	0	ENST00000277120.3:c.2000C>T	p.Ser667Leu	p.S667L	ENST00000277120		667	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112174061	112174061	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0087602-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	104	481	0	ENST00000257430.4:c.2770A>T	p.Arg924Ter	p.R924*	ENST00000257430	NM_000038.5	924	Aga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0087602-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	78	260	2	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119893	70119894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGCCT			P-0087602-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	119	475	0	ENST00000245479.2:c.899_900insTCGCC	p.Asn301ArgfsTer84	p.N301Rfs*84	ENST00000245479	NM_000346.3	299	ccg/cCGCCTcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778720		P-0087603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	20	443	0	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0087613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	405	490	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306602	41306602	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1419824411		P-0087613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	121	354	0	ENST00000373198.4:c.1057G>A	p.Asp353Asn	p.D353N	ENST00000373198	NM_133170.3	353	Gat/Aat																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560902	9560902	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0087613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	325	468	0	ENST00000353224.5:c.880G>T	p.Glu294Ter	p.E294*	ENST00000353224	NM_177990.2	294	Gaa/Taa																																																																															
NBN	4683	MSKCC	GRCh37	8	90967691	90967691	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	38	333	0	ENST00000265433.3:c.1217C>G	p.Ser406Cys	p.S406C	ENST00000265433	NM_002485.4	406	tCc/tGc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1795726	1795726	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1384	365	696	0	ENST00000260795.2:c.65C>G	p.Ser22Trp	p.S22W	ENST00000260795		22	tCg/tGg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730863	40730863	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	118	446	0	ENST00000373198.4:c.3672G>C	p.Lys1224Asn	p.K1224N	ENST00000373198	NM_133170.3	1224	aaG/aaC																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066683	94066683	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	282	400	0	ENST00000369303.4:c.1076G>T	p.Gly359Val	p.G359V	ENST00000369303	NM_004440.3	359	gGa/gTa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256492	115256492	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	98	356	0	ENST00000369535.4:c.219G>T	p.Arg73Ser	p.R73S	ENST00000369535	NM_002524.4	73	agG/agT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845251	151845251	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	146	427	0	ENST00000262189.6:c.13761G>C	p.Trp4587Cys	p.W4587C	ENST00000262189	NM_170606.2	4587	tgG/tgC																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267287	41267287	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	229	412	0	ENST00000349496.5:c.871G>C	p.Val291Leu	p.V291L	ENST00000349496	NM_001904.3	291	Gtt/Ctt																																																																															
RRAS	6237	MSKCC	GRCh37	19	50138865	50138865	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0087613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	187	422	0	ENST00000246792.3:c.625A>C	p.Lys209Gln	p.K209Q	ENST00000246792	NM_006270.3	209	Aag/Cag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458777	120458777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			812	216	521	0	ENST00000256646.2:c.6568C>T	p.Pro2190Ser	p.P2190S	ENST00000256646	NM_024408.3	2190	Cct/Tct																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600330	10600330	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	81	442	0	ENST00000171111.5:c.1525G>T	p.Gly509Trp	p.G509W	ENST00000171111	NM_203500.1	509	Ggg/Tgg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77066824	77066824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779095416		P-0087617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	73	398	0	ENST00000356341.3:c.661C>T	p.Pro221Ser	p.P221S	ENST00000356341	NM_002576.4	221	Ccc/Tcc																																																																															
MGA	23269	MSKCC	GRCh37	15	42058969	42058969	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	85	504	0	ENST00000219905.7:c.8689A>G	p.Ile2897Val	p.I2897V	ENST00000219905	NM_001164273.1	2897	Atc/Gtc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31449510	31449510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	58	267	0	ENST00000344624.3:c.2699C>T	p.Pro900Leu	p.P900L	ENST00000344624		900	cCa/cTa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560815	9560815	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0087617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	162	423	0	ENST00000353224.5:c.967G>T	p.Glu323Ter	p.E323*	ENST00000353224	NM_177990.2	323	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0087617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	63	230	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94194123	94194123	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	60	241	0	ENST00000323929.3:c.1305G>C	p.Gln435His	p.Q435H	ENST00000323929	NM_005591.3	435	caG/caC																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038817	47038817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	70	390	0	ENST00000329236.7:c.593C>A	p.Pro198His	p.P198H	ENST00000329236	NM_001204466.1	198	cCc/cAc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678450	88678450	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0087617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	101	413	2	ENST00000360948.2:c.1086C>A	p.Cys362Ter	p.C362*	ENST00000360948	NM_001012338.2	362	tgC/tgA																																																																															
KIT	3815	MSKCC	GRCh37	4	55573390	55573390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0087617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	97	349	0	ENST00000288135.5:c.1052T>A	p.Met351Lys	p.M351K	ENST00000288135	NM_000222.2	351	aTg/aAg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38153396	38153396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	30	356	0	ENST00000317025.8:c.2833G>T	p.Gly945Cys	p.G945C	ENST00000317025	NM_023034.1	945	Ggc/Tgc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123196759	123196759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	66	270	0	ENST00000218089.9:c.1646C>A	p.Thr549Lys	p.T549K	ENST00000218089	NM_001042749.1	549	aCa/aAa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871145	12871146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0087617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	81	370	0	ENST00000228872.4:c.373dup	p.Ser125PhefsTer2	p.S125Ffs*2	ENST00000228872	NM_004064.3	124	-/T																																																																															
MET	4233	MSKCC	GRCh37	7	116395524	116395524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	81	300	0	ENST00000397752.3:c.1817G>T	p.Gly606Val	p.G606V	ENST00000397752	NM_000245.2	606	gGa/gTa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028815	47028816	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTAC			P-0087617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	90	440	0	ENST00000329236.7:c.121_124dup	p.Arg42LeufsTer16	p.R42Lfs*16	ENST00000329236	NM_001204466.1	40	gac/gaCTACc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515207	149515207	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	103	530	0	ENST00000261799.4:c.275G>T	p.Gly92Val	p.G92V	ENST00000261799	NM_002609.3	92	gGg/gTg																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0079318-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			196	162	288	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
MET	4233	MSKCC	GRCh37	7	116417463	116417463	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913244		P-0079318-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			532	154	249	0	ENST00000397752.3:c.3280C>T	p.His1094Tyr	p.H1094Y	ENST00000397752	NM_000245.2	1094	Cat/Tat																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287194	33287194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079318-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			504	91	292	0	ENST00000374542.5:c.1903G>A	p.Glu635Lys	p.E635K	ENST00000374542	NM_001141970.1	635	Gag/Aag																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079318-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			602	139	510	0	ENST00000244661.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000244661	NM_003537.3	74	Gaa/Caa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147594	47147594	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0079318-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			377	260	295	0	ENST00000409792.3:c.4732G>T	p.Glu1578Ter	p.E1578*	ENST00000409792	NM_014159.6	1578	Gaa/Taa																																																																															
ABL1	25	MSKCC	GRCh37	9	133747537	133747537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079318-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			281	61	155	0	ENST00000318560.5:c.844G>A	p.Glu282Lys	p.E282K	ENST00000318560	NM_005157.4	282	Gag/Aag																																																																															
ATRX	546	MSKCC	GRCh37	X	76909665	76909665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079318-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			214	60	199	0	ENST00000373344.5:c.4240G>A	p.Glu1414Lys	p.E1414K	ENST00000373344	NM_000489.3	1414	Gaa/Aaa																																																																															
RRAS	6237	MSKCC	GRCh37	19	50143274	50143274	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079318-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			254	64	154	0	ENST00000246792.3:c.82G>C	p.Glu28Gln	p.E28Q	ENST00000246792	NM_006270.3	28	Gag/Cag																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62297381	62297381	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T			P-0079318-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			335	165	130	0	ENST00000482936.1:c.563C>T	p.Ala188Val	p.A188V	ENST00000482936		188	gCc/gTc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212159	5212159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079318-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			416	109	187	0	ENST00000357368.4:c.4872G>A	p.Met1624Ile	p.M1624I	ENST00000357368	NM_002850.3	1624	atG/atA																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119631608	119631608	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1289744832		P-0085841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	96	392	1	ENST00000316626.5:c.658C>T	p.Arg220Trp	p.R220W	ENST00000316626		220	Cgg/Tgg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111560	8111560	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0085841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	54	395	0	ENST00000346208.3:c.1046A>C	p.Asn349Thr	p.N349T	ENST00000346208		349	aAt/aCt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0086350-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			114	33	226	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0086350-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			457	279	326	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557891	187557891	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200242253		P-0086350-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			798	90	549	0	ENST00000441802.2:c.3820G>A	p.Val1274Ile	p.V1274I	ENST00000441802	NM_005245.3	1274	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577110	7577110	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086350-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			463	235	431	0	ENST00000269305.4:c.828del	p.Cys277ValfsTer68	p.C277Vfs*68	ENST00000269305	NM_001126112.2	276	gcC/gc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602897	10602931	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGCAGTGGGACAGGTTGAAGAACTCCTCTTGCT	TTGGCAGTGGGACAGGTTGAAGAACTCCTCTTGCT	-			P-0086350-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			490	236	479	0	ENST00000171111.5:c.647_681del	p.Lys216ThrfsTer122	p.K216Tfs*122	ENST00000171111	NM_203500.1	216	aAGCAAGAGGAGTTCTTCAACCTGTCCCACTGCCAA/a																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755627	57755627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086350-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			774	65	554	0	ENST00000274289.3:c.160G>T	p.Ala54Ser	p.A54S	ENST00000274289	NM_006622.3	54	Gcg/Tcg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299819	15299819	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086350-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			703	81	491	0	ENST00000263388.2:c.1359C>G	p.Phe453Leu	p.F453L	ENST00000263388	NM_000435.2	453	ttC/ttG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578467	7578467	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	25	423	0	ENST00000269305.4:c.463A>C	p.Thr155Pro	p.T155P	ENST00000269305	NM_001126112.2	155	Acc/Ccc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518270	8518270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs556357771		P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	30	354	0	ENST00000356435.5:c.1121C>T	p.Ala374Val	p.A374V	ENST00000356435		374	gCg/gTg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546985	9546985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	12	434	0	ENST00000353224.5:c.1037G>A	p.Gly346Glu	p.G346E	ENST00000353224	NM_177990.2	346	gGg/gAg																																																																															
TERT	7015	MSKCC	GRCh37	5	1278791	1278791	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs772070672		P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	17	409	0	ENST00000310581.5:c.2251G>T	p.Ala751Ser	p.A751S	ENST00000310581	NM_198253.2	751	Gcc/Tcc																																																																															
INSR	3643	MSKCC	GRCh37	19	7170683	7170683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	25	390	0	ENST00000302850.5:c.1348C>A	p.Gln450Lys	p.Q450K	ENST00000302850	NM_000208.2	450	Cag/Aag																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439715	51439715	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	12	404	0	ENST00000262662.1:c.280G>T	p.Ala94Ser	p.A94S	ENST00000262662		94	Gct/Tct																																																																															
MPL	4352	MSKCC	GRCh37	1	43814623	43814623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	12	428	0	ENST00000372470.3:c.1418C>A	p.Pro473His	p.P473H	ENST00000372470	NM_005373.2	473	cCc/cAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120794	115120794	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	26	418	0	ENST00000257566.3:c.212C>A	p.Ala71Glu	p.A71E	ENST00000257566	NM_016569.3	71	gCg/gAg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372217	55372217	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	21	454	0	ENST00000297316.4:c.907C>A	p.Pro303Thr	p.P303T	ENST00000297316	NM_022454.3	303	Ccc/Acc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86629096	86629096	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			89	20	281	0	ENST00000274376.6:c.841A>T	p.Arg281Ter	p.R281*	ENST00000274376	NM_002890.2	281	Aga/Tga																																																																															
CD79A	973	MSKCC	GRCh37	19	42383147	42383147	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	35	434	0	ENST00000221972.3:c.167A>G	p.His56Arg	p.H56R	ENST00000221972	NM_021601.3	56	cAc/cGc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748002	72748002	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	13	371	0	ENST00000357731.5:c.176G>C	p.Arg59Thr	p.R59T	ENST00000357731	NM_173808.2	59	aGg/aCg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245895	5245895	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	28	476	0	ENST00000357368.4:c.880G>C	p.Gly294Arg	p.G294R	ENST00000357368	NM_002850.3	294	Ggt/Cgt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106522593	106522593	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			59	19	264	0	ENST00000359195.3:c.2570C>A	p.Thr857Asn	p.T857N	ENST00000359195	NM_002649.2	857	aCt/aAt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2130289	2130289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	15	487	0	ENST00000219476.3:c.3521G>T	p.Arg1174Leu	p.R1174L	ENST00000219476	NM_000548.3	1174	cGg/cTg																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154264	2154264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	16	431	0	ENST00000434045.2:c.664C>A	p.Pro222Thr	p.P222T	ENST00000434045	NM_001127598.1	222	Ccc/Acc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39741420	39741420	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	23	319	0	ENST00000361337.2:c.1309-2A>T		p.X437_splice	ENST00000361337	NM_003286.2	437																																																																																
TRAF7	84231	MSKCC	GRCh37	16	2222248	2222248	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	17	416	0	ENST00000326181.6:c.532G>T	p.Ala178Ser	p.A178S	ENST00000326181	NM_032271.2	178	Gcc/Tcc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609748	81609748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	15	517	0	ENST00000298171.2:c.1346C>T	p.Pro449Leu	p.P449L	ENST00000298171	NM_000369.2	449	cCc/cTc																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80537139	80537139	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	23	283	0	ENST00000286548.4:c.259del	p.Met87CysfsTer4	p.M87Cfs*4	ENST00000286548	NM_002072.3	87	Atg/tg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89838088	89838088	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	12	385	0	ENST00000389301.3:c.2149A>G	p.Met717Val	p.M717V	ENST00000389301	NM_000135.2	717	Atg/Gtg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46268726	46268726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	23	430	0	ENST00000371998.3:c.3011C>A	p.Ser1004Tyr	p.S1004Y	ENST00000371998		1004	tCt/tAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241647	55241647	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	11	459	0	ENST00000275493.2:c.2095C>A	p.Pro699Thr	p.P699T	ENST00000275493	NM_005228.3	699	Ccc/Acc																																																																															
RB1	5925	MSKCC	GRCh37	13	49050916	49050916	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	10	348	0	ENST00000267163.4:c.2600A>T	p.Asn867Ile	p.N867I	ENST00000267163	NM_000321.2	867	aAc/aTc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589181	67589181	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			42	17	351	0	ENST00000274335.5:c.1169A>G	p.Tyr390Cys	p.Y390C	ENST00000274335		390	tAt/tGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29559090	29559090	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0087638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			30	10	99	0	ENST00000358273.4:c.3198-1G>T		p.X1066_splice	ENST00000358273	NM_001042492.2	1066																																																																																
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	15	531	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0087644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	126	456	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591144	67591154	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ATACTTGATGT	ATACTTGATGT	C			P-0087644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	77	497	0	ENST00000274335.5:c.1737_1745+2delinsC		p.X579_splice	ENST00000274335		579																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66535395	66535395	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0087644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	70	504	0	ENST00000273854.3:c.66del	p.Ile23SerfsTer39	p.I23Sfs*39	ENST00000273854	NM_004439.5	22	ccC/cc																																																																															
ATM	472	MSKCC	GRCh37	11	108175528	108175528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs376603775		P-0087654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	38	391	1	ENST00000278616.4:c.5623C>T	p.Arg1875Ter	p.R1875*	ENST00000278616	NM_000051.3	1875	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0087659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	66	316	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67632022	67632022	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	56	465	0	ENST00000272342.5:c.2208G>T	p.Leu736Phe	p.L736F	ENST00000272342	NM_019002.3	736	ttG/ttT																																																																															
SCG5	6447	MSKCC	GRCh37	15	32935801	32935801	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	61	368	0	ENST00000300175.4:c.8C>A	p.Ser3Tyr	p.S3Y	ENST00000300175	NM_001144757.1	3	tCc/tAc																																																																															
STK11	6794	MSKCC	GRCh37	19	1219409	1219409	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0087659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	44	317	1	ENST00000326873.7:c.461A>C	p.His154Pro	p.H154P	ENST00000326873	NM_000455.4	154	cAc/cCc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560857	9560857	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0087659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	76	475	1	ENST00000353224.5:c.925C>T	p.Gln309Ter	p.Q309*	ENST00000353224	NM_177990.2	309	Caa/Taa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89456514	89456514	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0087659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	43	306	1	ENST00000336596.2:c.1690A>T	p.Ile564Phe	p.I564F	ENST00000336596	NM_005233.5	564	Att/Ttt																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199879	138199879	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	72	520	0	ENST00000237289.4:c.1297A>G	p.Met433Val	p.M433V	ENST00000237289	NM_001270507.1	433	Atg/Gtg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086407-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	61	539	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs387906846		P-0086407-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	8	901	1	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175720	112175720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0086407-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	28	667	1	ENST00000257430.4:c.4429C>T	p.Gln1477Ter	p.Q1477*	ENST00000257430	NM_000038.5	1477	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201744589		P-0086407-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	10	710	0	ENST00000269305.4:c.892G>A	p.Glu298Lys	p.E298K	ENST00000269305	NM_001126112.2	298	Gag/Aag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650883	37650885	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0086857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	10	498	0	ENST00000447079.4:c.2359_2361del	p.Val787del	p.V787del	ENST00000447079	NM_015083.1	785	agTGTt/agt																																																																															
ATRX	546	MSKCC	GRCh37	X	76872114	76872114	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0086857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			69	12	225	0	ENST00000373344.5:c.5533A>C	p.Lys1845Gln	p.K1845Q	ENST00000373344	NM_000489.3	1845	Aag/Cag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627587	37627587	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	28	640	0	ENST00000447079.4:c.1502del	p.Arg501LysfsTer6	p.R501Kfs*6	ENST00000447079	NM_015083.1	501	aGa/aa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0087472-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			528	97	526	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0087472-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			471	99	563	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0087472-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	91	496	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																															
MPL	4352	MSKCC	GRCh37	1	43806160	43806160	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087472-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			535	35	573	0	ENST00000372470.3:c.956G>T	p.Arg319Met	p.R319M	ENST00000372470	NM_005373.2	319	aGg/aTg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23614932	23614932	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0087472-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			477	96	510	0	ENST00000261584.4:c.3409A>G	p.Ile1137Val	p.I1137V	ENST00000261584	NM_024675.3	1137	Att/Gtt																																																																															
FH	2271	MSKCC	GRCh37	1	241675313	241675313	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0087472-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			441	80	462	0	ENST00000366560.3:c.509del	p.Gly170AlafsTer32	p.G170Afs*32	ENST00000366560	NM_000143.3	170	gGc/gc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572210	64572210	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs863224526		P-0087562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	218	762	0	ENST00000337652.1:c.1444G>T	p.Glu482Ter	p.E482*	ENST00000337652	NM_130803.2	482	Gaa/Taa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575062	64575063	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0087562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	225	667	0	ENST00000337652.1:c.759_760delinsT	p.Leu254CysfsTer32	p.L254Cfs*32	ENST00000337652	NM_130803.2	253	gaCCtg/gaTtg																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630021	67630021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	46	475	0	ENST00000272342.5:c.457C>G	p.Leu153Val	p.L153V	ENST00000272342	NM_019002.3	153	Ctg/Gtg																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439653	51439654	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0087565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	546	521	0	ENST00000262662.1:c.219_220dup	p.Ile74ThrfsTer51	p.I74Tfs*51	ENST00000262662		73	gtc/gtCAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76777845	76777845	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0087565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			51	100	506	0	ENST00000373344.5:c.6871del	p.Ile2291TyrfsTer29	p.I2291Yfs*29	ENST00000373344	NM_000489.3	2291	Ata/ta																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs193920894		P-0086052-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	101	469	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0086624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	62	183	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ALK	238	MSKCC	GRCh37	2	30143212	30143212	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772569032		P-0086624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	74	323	1	ENST00000389048.3:c.314C>T	p.Ala105Val	p.A105V	ENST00000389048	NM_004304.4	105	gCg/gTg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555125	106555125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			956	76	375	0	ENST00000369096.4:c.2242G>A	p.Asp748Asn	p.D748N	ENST00000369096	NM_001198.3	748	Gac/Aac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075117	16075118	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0086624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	155	281	0	ENST00000268712.3:c.434dup	p.Asp146GlyfsTer9	p.D146Gfs*9	ENST00000268712	NM_006311.3	145	aag/aaAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578383	7578394	+	inframe_deletion	In_Frame_Del	DEL	AGCAGCGCTCAT	AGCAGCGCTCAT	-			P-0086624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	196	365	0	ENST00000269305.4:c.536_547del	p.His179_Ser183delinsPro	p.H179_S183delinsP	ENST00000269305	NM_001126112.2	179	cATGAGCGCTGCTca/cca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437178	49437178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	28	413	0	ENST00000301067.7:c.5501C>T	p.Ser1834Phe	p.S1834F	ENST00000301067	NM_003482.3	1834	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934573		P-0087496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	86	420	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249013	55249014	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACCCCC			P-0087496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	349	504	0	ENST00000275493.2:c.2314_2319dup	p.Pro772_His773dup	p.P772_H773dup	ENST00000275493	NM_005228.3	772	aac/aACCCCCac																																																																															
RB1	5925	MSKCC	GRCh37	13	48916747	48916747	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131690915		P-0087496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	46	257	0	ENST00000267163.4:c.277C>T	p.Gln93Ter	p.Q93*	ENST00000267163	NM_000321.2	93	Caa/Taa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53225997	53225997	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781878921		P-0087496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	42	569	0	ENST00000375401.3:c.2852G>A	p.Arg951Gln	p.R951Q	ENST00000375401	NM_004187.3	951	cGa/cAa																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020724	26020724	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			731	135	516	0	ENST00000357647.3:c.7C>G	p.Arg3Gly	p.R3G	ENST00000357647	NM_003529.2	3	Cgc/Ggc																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233439	69233439	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	44	542	0	ENST00000462284.1:c.1304G>C	p.Ser435Thr	p.S435T	ENST00000462284	NM_002392.5	435	aGt/aCt																																																																															
AR	367	MSKCC	GRCh37	X	66765721	66765721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			735	50	711	0	ENST00000374690.3:c.733G>A	p.Val245Met	p.V245M	ENST00000374690	NM_000044.3	245	Gtg/Atg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589147	67589147	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	20	434	0	ENST00000274335.5:c.1135A>G	p.Lys379Glu	p.K379E	ENST00000274335		379	Aaa/Gaa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138446	2138446	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C	rs1057518103		P-0087497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	46	531	0	ENST00000219476.3:c.5260-1G>C		p.X1754_splice	ENST00000219476	NM_000548.3	1754																																																																																
SETD2	29072	MSKCC	GRCh37	3	47059194	47059194	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0087497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	193	458	0	ENST00000409792.3:c.7467C>G	p.Tyr2489Ter	p.Y2489*	ENST00000409792	NM_014159.6	2489	taC/taG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0087498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	135	567	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26055982	26056473	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	AGAGCCTTTTGGGTTTTAGAAGTAGGCGTTCGCCTATTTCTTCTTGGGCGCCGCCTTCTTAGGCTTGACAACCTTGGGCTTAGCGGCCTTGGGCTTCACAGCCTTAGCAGCACTTTTGGCAGCTTTCTTGGGCTTCGCAACCTTGGCCTTCTTTGGGCTCTTAGCCACTTTCTTGGTTACAGTGGCCGCGGCCGGCTTCTTCGCTTTCTTCGGTGTTTTCTTAGCGCTCTTCTTCGGAGTTGCGCCGCCAGCCGCCTTCTTGGGCTTCTTGGCTGCCCCAACTGGCTTCTTAGGTTTGGTTCCGCCCGCCTTTTTAACCTTGGGCTTGGCTTCCCCGGAGGCTGCCTTCTTGTTGAGTTTAAAGGAGCCAGAAGCACCGGTGCCTTTCGTTTGCACCAGAGTGCCCTTGCTCACCAGGCTCTTGAGACCAAGTTTGATACGGCTGTTGTTTTTCTCCACATCATAGCCGGCGGCAGCCAACGCTTTTTTCAG	AGAGCCTTTTGGGTTTTAGAAGTAGGCGTTCGCCTATTTCTTCTTGGGCGCCGCCTTCTTAGGCTTGACAACCTTGGGCTTAGCGGCCTTGGGCTTCACAGCCTTAGCAGCACTTTTGGCAGCTTTCTTGGGCTTCGCAACCTTGGCCTTCTTTGGGCTCTTAGCCACTTTCTTGGTTACAGTGGCCGCGGCCGGCTTCTTCGCTTTCTTCGGTGTTTTCTTAGCGCTCTTCTTCGGAGTTGCGCCGCCAGCCGCCTTCTTGGGCTTCTTGGCTGCCCCAACTGGCTTCTTAGGTTTGGTTCCGCCCGCCTTTTTAACCTTGGGCTTGGCTTCCCCGGAGGCTGCCTTCTTGTTGAGTTTAAAGGAGCCAGAAGCACCGGTGCCTTTCGTTTGCACCAGAGTGCCCTTGCTCACCAGGCTCTTGAGACCAAGTTTGATACGGCTGTTGTTTTTCTCCACATCATAGCCGGCGGCAGCCAACGCTTTTTTCAG	-			P-0087498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	76	374	0	ENST00000343677.2:c.184_*33del		p.*62*	ENST00000343677	NM_005319.3	62																																																																																
PPP2R1A	5518	MSKCC	GRCh37	19	52723088	52723088	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	233	545	2	ENST00000322088.6:c.1273G>C	p.Glu425Gln	p.E425Q	ENST00000322088	NM_014225.5	425	Gag/Cag																																																																															
BTK	695	MSKCC	GRCh37	X	100615607	100615607	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0087498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	117	529	0	ENST00000308731.7:c.725T>G	p.Phe242Cys	p.F242C	ENST00000308731	NM_000061.2	242	tTt/tGt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94169022	94169022	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	124	385	0	ENST00000323929.3:c.1970C>A	p.Pro657His	p.P657H	ENST00000323929	NM_005591.3	657	cCt/cAt																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424782	47424791	+	frameshift_variant	Frame_Shift_Del	DEL	TACTCATATG	TACTCATATG	-			P-0087498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	133	634	0	ENST00000404338.3:c.2853_2862del	p.His952IlefsTer72	p.H952Ifs*72	ENST00000404338	NM_004491.4	950	gcTACTCATATG/gc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67593381	67593389	+	inframe_deletion	In_Frame_Del	DEL	CCTCAATGT	CCTCAATGT	-			P-0087498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	145	577	0	ENST00000274335.5:c.2128_2136del	p.Leu710_Val712del	p.L710_V712del	ENST00000274335		709	tcCCTCAATGTc/tcc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0087499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	69	492	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830959	72830959	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0087499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	76	612	0	ENST00000268489.5:c.5622del	p.Glu1875LysfsTer39	p.E1875Kfs*39	ENST00000268489	NM_006885.3	1874	ccC/cc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67650717	67650717	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1486997074		P-0087499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	88	440	0	ENST00000264010.4:c.1022G>A	p.Arg341His	p.R341H	ENST00000264010	NM_006565.3	341	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0087500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	150	467	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175213	112175213	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0087500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	128	492	0	ENST00000257430.4:c.3922A>T	p.Lys1308Ter	p.K1308*	ENST00000257430	NM_000038.5	1308	Aaa/Taa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231497	5231497	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200771602		P-0087500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	67	494	0	ENST00000357368.4:c.1979C>T	p.Pro660Leu	p.P660L	ENST00000357368	NM_002850.3	660	cCg/cTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29665818	29665818	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0087500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	76	267	0	ENST00000358273.4:c.6916A>T	p.Asn2306Tyr	p.N2306Y	ENST00000358273	NM_001042492.2	2306	Aat/Tat																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0087502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	23	404	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
MGA	23269	MSKCC	GRCh37	15	42054471	42054471	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	50	399	0	ENST00000219905.7:c.7655C>G	p.Ser2552Cys	p.S2552C	ENST00000219905	NM_001164273.1	2552	tCt/tGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118925	115118925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	37	507	0	ENST00000257566.3:c.416G>A	p.Arg139Lys	p.R139K	ENST00000257566	NM_016569.3	139	aGa/aAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	74	497	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	18	195	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	129	899	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	107	1035	1	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	27	818	4	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	82	773	2	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023769	27023769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	24	735	0	ENST00000324856.7:c.879del	p.Thr294ProfsTer69	p.T294Pfs*69	ENST00000324856	NM_006015.4	292	aCc/ac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535450	66535450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	46	583	0	ENST00000273854.3:c.11C>T	p.Ser4Leu	p.S4L	ENST00000273854	NM_004439.5	4	tCg/tTg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	69	736	1	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961011	15961011	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142717545		P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	109	555	0	ENST00000268712.3:c.6209C>T	p.Ser2070Leu	p.S2070L	ENST00000268712	NM_006311.3	2070	tCg/tTg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563349	21563349	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	101	929	0	ENST00000382592.4:c.570del	p.Tyr191ThrfsTer49	p.Y191Tfs*49	ENST00000382592	NM_014572.2	190	ccC/cc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31493364	31493364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	97	559	0	ENST00000344624.3:c.1792G>A	p.Glu598Lys	p.E598K	ENST00000344624		598	Gag/Aag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	464374	464374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1225548195		P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	96	511	0	ENST00000399788.2:c.820G>A	p.Ala274Thr	p.A274T	ENST00000399788	NM_001042603.1	274	Gca/Aca																																																																															
SDHA	6389	MSKCC	GRCh37	5	226104	226104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139881415		P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	61	439	2	ENST00000264932.6:c.563G>A	p.Arg188Gln	p.R188Q	ENST00000264932	NM_004168.2	188	cGg/cAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692803	89692803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	54	283	1	ENST00000371953.3:c.287C>A	p.Pro96Gln	p.P96Q	ENST00000371953	NM_000314.4	96	cCa/cAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223020	36223020	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	78	985	1	ENST00000222270.7:c.5653del	p.Leu1885CysfsTer10	p.L1885Cfs*10	ENST00000222270	NM_014727.1	1883	ggC/gg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278070	18278070	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs886041602		P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	85	632	0	ENST00000222254.8:c.1690A>G	p.Lys564Glu	p.K564E	ENST00000222254	NM_005027.3	564	Aag/Gag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37672060	37672060	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	23	482	0	ENST00000447079.4:c.2845A>G	p.Ser949Gly	p.S949G	ENST00000447079	NM_015083.1	949	Agc/Ggc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681100	30681100	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765107298		P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	27	663	0	ENST00000376406.3:c.619G>A	p.Gly207Ser	p.G207S	ENST00000376406	NM_014641.2	207	Ggc/Agc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104697	69104697	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148366673		P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	109	646	0	ENST00000288368.4:c.4541C>T	p.Ser1514Phe	p.S1514F	ENST00000288368	NM_024870.2	1514	tCc/tTc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522560	176522560	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201831200		P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	39	890	2	ENST00000292408.4:c.1657G>A	p.Ala553Thr	p.A553T	ENST00000292408	NM_213647.1	553	Gcc/Acc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913265	39913265	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	100	791	0	ENST00000378444.4:c.4850del	p.Leu1617Ter	p.L1617*	ENST00000378444	NM_001123385.1	1617	tTa/ta																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012283	152012283	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	46	634	0	ENST00000262189.6:c.530G>T	p.Ser177Ile	p.S177I	ENST00000262189	NM_170606.2	177	aGc/aTc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3929833	3929833	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	34	536	0	ENST00000262367.5:c.85G>T	p.Asp29Tyr	p.D29Y	ENST00000262367	NM_004380.2	29	Gat/Tat																																																																															
YES1	7525	MSKCC	GRCh37	18	736870	736870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	59	570	0	ENST00000314574.4:c.1229G>A	p.Cys410Tyr	p.C410Y	ENST00000314574	NM_005433.3	410	tGc/tAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409977	139409977	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	99	809	0	ENST00000277541.6:c.1861C>A	p.Arg621Ser	p.R621S	ENST00000277541	NM_017617.3	621	Cgc/Agc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564360	86564360	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	56	799	0	ENST00000274376.6:c.92C>A	p.Pro31His	p.P31H	ENST00000274376	NM_002890.2	31	cCc/cAc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162722965	162722965	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	109	647	0	ENST00000367921.3:c.163T>C	p.Ser55Pro	p.S55P	ENST00000367921	NM_006182.2	55	Tcc/Ccc																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84397797	84397798	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	A			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	63	376	0	ENST00000321945.7:c.213dup	p.Ser72Ter	p.S72*	ENST00000321945	NM_139076.2	71	-/T																																																																															
RASA1	5921	MSKCC	GRCh37	5	86681147	86681147	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	56	500	0	ENST00000274376.6:c.2788C>A	p.Leu930Met	p.L930M	ENST00000274376	NM_002890.2	930	Ctg/Atg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213954	36213954	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	53	861	0	ENST00000222270.7:c.2780T>C	p.Val927Ala	p.V927A	ENST00000222270	NM_014727.1	927	gTg/gCg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805910	89805910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	127	762	1	ENST00000389301.3:c.3986G>A	p.Arg1329Lys	p.R1329K	ENST00000389301	NM_000135.2	1329	aGg/aAg																																																																															
INHA	3623	MSKCC	GRCh37	2	220437289	220437289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	100	818	0	ENST00000243786.2:c.193G>T	p.Gly65Trp	p.G65W	ENST00000243786	NM_002191.3	65	Ggg/Tgg																																																																															
USP8	9101	MSKCC	GRCh37	15	50789365	50789365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	65	530	0	ENST00000307179.4:c.2975G>T	p.Arg992Leu	p.R992L	ENST00000307179		992	cGg/cTg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396311	396311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	92	779	0	ENST00000262320.3:c.715C>T	p.Pro239Ser	p.P239S	ENST00000262320	NM_003502.3	239	Ccg/Tcg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522230	157522230	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	115	871	0	ENST00000346085.5:c.4502T>G	p.Val1501Gly	p.V1501G	ENST00000346085	NM_020732.3	1501	gTa/gGa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57857476	57857476	+	start_lost	Translation_Start_Site	SNP	T	T	C	rs1476283594		P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	101	750	0	ENST00000228682.2:c.2T>C	p.Met1?	p.M1?	ENST00000228682	NM_005269.2	1	aTg/aCg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222742	53222742	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	39	851	0	ENST00000375401.3:c.4194del	p.Leu1399TrpfsTer5	p.L1399Wfs*5	ENST00000375401	NM_004187.3	1398	ccC/cc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	459842	459842	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	90	488	0	ENST00000399788.2:c.1253T>C	p.Phe418Ser	p.F418S	ENST00000399788	NM_001042603.1	418	tTt/tCt																																																																															
ATRX	546	MSKCC	GRCh37	X	76907826	76907828	+	missense_variant	Missense_Mutation	ONP	TTC	TTC	CTT			P-0087511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	91	522	0	ENST00000373344.5:c.4333_4335delinsAAG	p.Glu1445Lys	p.E1445K	ENST00000373344	NM_000489.3	1445	GAA/AAG																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092809	27092809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050413-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			252	129	529	1	ENST00000324856.7:c.2830C>T	p.Gln944Ter	p.Q944*	ENST00000324856	NM_006015.4	944	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050413-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			119	331	539	0	ENST00000269305.4:c.398T>A	p.Met133Lys	p.M133K	ENST00000269305	NM_001126112.2	133	aTg/aAg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267359	198267359	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs377023736		P-0081618-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			302	244	559	0	ENST00000335508.6:c.1998G>C	p.Lys666Asn	p.K666N	ENST00000335508	NM_012433.2	666	aaG/aaC																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	44	508	0	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0086393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	65	546	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0086393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	52	430	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0086393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	49	359	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330611	65330611	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0086393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	24	550	0	ENST00000342505.4:c.1035del	p.Lys345AsnfsTer32	p.K345Nfs*32	ENST00000342505	NM_002227.2	345	aaA/aa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039371	47039371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			26	28	274	0	ENST00000329236.7:c.763C>T	p.Arg255Cys	p.R255C	ENST00000329236	NM_001204466.1	255	Cgc/Tgc																																																																															
CDH1	999	MSKCC	GRCh37	16	68856106	68856106	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0086393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	47	498	0	ENST00000261769.5:c.1914G>A	p.Trp638Ter	p.W638*	ENST00000261769	NM_004360.3	638	tgG/tgA																																																																															
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0086393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	74	526	4	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																															
KDR	3791	MSKCC	GRCh37	4	55960967	55960967	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0086393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	29	380	0	ENST00000263923.4:c.2971+2T>C		p.X991_splice	ENST00000263923	NM_002253.2	991																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27106100	27106100	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0086393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	54	619	1	ENST00000324856.7:c.5715del	p.Lys1905AsnfsTer18	p.K1905Nfs*18	ENST00000324856	NM_006015.4	1904	gAa/ga																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858561	57858561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763470494		P-0086393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	42	549	0	ENST00000228682.2:c.299G>A	p.Arg100His	p.R100H	ENST00000228682	NM_005269.2	100	cGc/cAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862824	9862824	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1404178457		P-0086393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	29	566	0	ENST00000330684.3:c.2479G>A	p.Ala827Thr	p.A827T	ENST00000330684	NM_001134407.1	827	Gcc/Acc																																																																															
MAX	4149	MSKCC	GRCh37	14	65543301	65543301	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779789251		P-0086393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	14	515	0	ENST00000358664.4:c.376G>A	p.Ala126Thr	p.A126T	ENST00000358664	NM_002382.4	126	Gcc/Acc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129255	152129255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	24	535	0	ENST00000206249.3:c.208G>A	p.Ala70Thr	p.A70T	ENST00000206249	NM_000125.3	70	Gcg/Acg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472420	88472420	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0086393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	26	472	0	ENST00000360948.2:c.2133+2T>C		p.X711_splice	ENST00000360948	NM_001012338.2	711																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38061195	38061219	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTTCTGGCGGCGCAAGTAGCAGC	CGCTTCTGGCGGCGCAAGTAGCAGC	-			P-0086393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	148	587	0	ENST00000250448.2:c.770_794del	p.Gly257AlafsTer56	p.G257Afs*56	ENST00000250448	NM_004496.3	257	gGCTGCTACTTGCGCCGCCAGAAGCGc/gc																																																																															
INHA	3623	MSKCC	GRCh37	2	220439826	220439826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	17	602	0	ENST00000243786.2:c.679G>T	p.Gly227Trp	p.G227W	ENST00000243786	NM_002191.3	227	Ggg/Tgg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818857	32818857	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0086393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	18	445	0	ENST00000354258.4:c.1094T>G	p.Leu365Ter	p.L365*	ENST00000354258	NM_000593.5	365	tTa/tGa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393349	139393349	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0086393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	19	484	0	ENST00000277541.6:c.6180+2T>C		p.X2060_splice	ENST00000277541	NM_017617.3	2060																																																																																
TERT	7015	MSKCC	GRCh37	5	1253937	1253937	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	28	553	0	ENST00000310581.5:c.3305A>G	p.Gln1102Arg	p.Q1102R	ENST00000310581	NM_198253.2	1102	cAg/cGg																																																																															
ALK	238	MSKCC	GRCh37	2	29455225	29455225	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	30	523	0	ENST00000389048.3:c.2577G>T	p.Glu859Asp	p.E859D	ENST00000389048	NM_004304.4	859	gaG/gaT																																																																															
ARID2	196528	MSKCC	GRCh37	12	46211603	46211603	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	58	407	0	ENST00000334344.6:c.569T>C	p.Val190Ala	p.V190A	ENST00000334344	NM_152641.2	190	gTc/gCc																																																																															
ATR	545	MSKCC	GRCh37	3	142168402	142168402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	76	416	0	ENST00000350721.4:c.7804G>A	p.Val2602Ile	p.V2602I	ENST00000350721	NM_001184.3	2602	Gta/Ata																																																																															
NBN	4683	MSKCC	GRCh37	8	90967542	90967542	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	84	452	0	ENST00000265433.3:c.1366A>G	p.Arg456Gly	p.R456G	ENST00000265433	NM_002485.4	456	Aga/Gga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577523	7577524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0086772-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	44	425	0	ENST00000269305.4:c.757dup	p.Thr253AsnfsTer11	p.T253Nfs*11	ENST00000269305	NM_001126112.2	253	acc/aAcc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44945176	44945178	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0086772-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	47	361	0	ENST00000377967.4:c.3505_3507del	p.Val1169del	p.V1169del	ENST00000377967	NM_021140.2	1167	tTTGtt/ttt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0086772-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	46	329	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402727	139402727	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0086772-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	60	605	0	ENST00000277541.6:c.3282C>A	p.Cys1094Ter	p.C1094*	ENST00000277541	NM_017617.3	1094	tgC/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0087351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	189	481	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62327179	62327179	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	C			P-0087351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	259	535	0	ENST00000482936.1:c.3871G>C	p.Val1291Leu	p.V1291L	ENST00000482936		1291	Gtc/Ctc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	80	722	1	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																															
RET	5979	MSKCC	GRCh37	10	43597885	43597885	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1311922451		P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	68	673	1	ENST00000355710.3:c.433G>A	p.Val145Ile	p.V145I	ENST00000355710	NM_020975.4	145	Gta/Ata																																																																															
TET1	80312	MSKCC	GRCh37	10	70332759	70332759	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775155506		P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	68	511	1	ENST00000373644.4:c.664C>T	p.Arg222Cys	p.R222C	ENST00000373644	NM_030625.2	222	Cgc/Tgc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940589	71940589	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	48	672	0	ENST00000298229.2:c.743del	p.Leu248CysfsTer14	p.L248Cfs*14	ENST00000298229	NM_001567.3	247	cTt/ct																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948483	71948484	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	56	714	1	ENST00000298229.2:c.3201dup	p.Ser1068GlnfsTer17	p.S1068Qfs*17	ENST00000298229	NM_001567.3	1065	-/C																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444053	49444053	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	49	669	0	ENST00000301067.7:c.3318del	p.Ser1107AlafsTer12	p.S1107Afs*12	ENST00000301067	NM_003482.3	1106	ccC/cc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	30	529	4	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
RB1	5925	MSKCC	GRCh37	13	49030368	49030368	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	77	425	1	ENST00000267163.4:c.1848del	p.Gly617ValfsTer6	p.G617Vfs*6	ENST00000267163	NM_000321.2	615	Aaa/aa																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	86	593	10	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134544	2134544	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201710642		P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	32	721	2	ENST00000219476.3:c.4321C>T	p.Pro1441Ser	p.P1441S	ENST00000219476	NM_000548.3	1441	Ccc/Tcc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs80357522		P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	81	552	2	ENST00000357654.3:c.1961del	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	187	733	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291083	10291084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755889652		P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	124	916	5	ENST00000340748.4:c.387dup	p.Lys130GlnfsTer19	p.K130Qfs*19	ENST00000340748		129	-/C																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376212	15376212	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs551722840		P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	18	383	0	ENST00000263377.2:c.802G>A	p.Val268Ile	p.V268I	ENST00000263377	NM_058243.2	268	Gta/Ata																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792311	33792311	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760372994		P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	24	498	0	ENST00000498907.2:c.1010C>T	p.Thr337Met	p.T337M	ENST00000498907	NM_004364.3	337	aCg/aTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	88	606	2	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223176	5223176	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372181642		P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	48	642	1	ENST00000357368.4:c.2627C>T	p.Thr876Met	p.T876M	ENST00000357368	NM_002850.3	876	aCg/aTg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21349261	21349261	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750813513		P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	92	684	0	ENST00000215739.8:c.1888C>T	p.Arg630Trp	p.R630W	ENST00000215739	NM_006767.3	630	Cgg/Tgg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446744	29446744	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1457204359		P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	53	512	1	ENST00000544604.2:c.2575C>T	p.Arg859Ter	p.R859*	ENST00000544604	NM_001206998.1	859	Cga/Tga																																																																															
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	49	726	2	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																															
ATR	545	MSKCC	GRCh37	3	142184008	142184008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	57	404	0	ENST00000350721.4:c.6972G>A	p.Met2324Ile	p.M2324I	ENST00000350721	NM_001184.3	2324	atG/atA																																																																															
BCL6	604	MSKCC	GRCh37	3	187440364	187440364	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1426858162		P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	78	553	0	ENST00000232014.4:c.2003G>A	p.Arg668His	p.R668H	ENST00000232014	NM_001130845.1	668	cGt/cAt																																																																															
REST	5978	MSKCC	GRCh37	4	57797807	57797807	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747423176		P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	102	561	0	ENST00000309042.7:c.2783C>T	p.Thr928Met	p.T928M	ENST00000309042	NM_005612.4	928	aCg/aTg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	72	472	0	ENST00000303115.3:c.361del	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005365	150005365	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs918439730		P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	79	649	0	ENST00000253339.5:c.860G>A	p.Arg287Gln	p.R287Q	ENST00000253339		287	cGa/cAa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056209	26056211	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-	rs779842031		P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	95	587	0	ENST00000343677.2:c.446_448del	p.Lys149del	p.K149del	ENST00000343677	NM_005319.3	149	aAGAgc/agc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32172106	32172106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	79	610	0	ENST00000375023.3:c.2926C>T	p.Pro976Ser	p.P976S	ENST00000375023	NM_004557.3	976	Ccc/Tcc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	88	450	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	79	453	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
ABL1	25	MSKCC	GRCh37	9	133759398	133759398	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779869434		P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	65	472	0	ENST00000318560.5:c.1721G>A	p.Arg574Gln	p.R574Q	ENST00000318560	NM_005157.4	574	cGa/cAa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923086	39923087	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	96	274	0	ENST00000378444.4:c.3621dup	p.Gln1208ThrfsTer8	p.Q1208Tfs*8	ENST00000378444	NM_001123385.1	1207	-/A																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949107	44949107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			107	71	249	0	ENST00000377967.4:c.3668G>A	p.Gly1223Asp	p.G1223D	ENST00000377967	NM_021140.2	1223	gGc/gAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262507	16262508	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	47	424	0	ENST00000375759.3:c.9776dup	p.Ala3260CysfsTer7	p.A3260Cfs*7	ENST00000375759	NM_015001.2	3258	gcc/gCcc																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366939	40366939	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	57	613	0	ENST00000397332.2:c.258del	p.Ile88LeufsTer52	p.I88Lfs*52	ENST00000397332	NM_001033082.2	86	ccC/cc																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594984	47594984	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773744022		P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	91	640	0	ENST00000395288.2:c.1055G>A	p.Arg352His	p.R352H	ENST00000395288	NM_016506.5	352	cGc/cAc																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205263	61205263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	90	502	2	ENST00000301761.2:c.203C>T	p.Ala68Val	p.A68V	ENST00000301761	NM_017841.2	68	gCc/gTc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112278	115112278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	58	524	0	ENST00000257566.3:c.1462G>A	p.Ala488Thr	p.A488T	ENST00000257566	NM_016569.3	488	Gcg/Acg																																																																															
MGA	23269	MSKCC	GRCh37	15	42003456	42003456	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	31	609	0	ENST00000219905.7:c.2993T>C	p.Leu998Pro	p.L998P	ENST00000219905	NM_001164273.1	998	cTg/cCg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2111993	2111993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	93	589	0	ENST00000219476.3:c.1241G>A	p.Cys414Tyr	p.C414Y	ENST00000219476	NM_000548.3	414	tGt/tAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350614	89350614	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	103	510	0	ENST00000301030.4:c.2336A>C	p.Lys779Thr	p.K779T	ENST00000301030	NM_001256183.1	779	aAg/aCg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119721087	119721087	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	73	411	0	ENST00000316626.5:c.89-1G>A		p.X30_splice	ENST00000316626		30																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153247156	153247156	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	63	431	0	ENST00000281708.4:c.1644+2T>C		p.X548_splice	ENST00000281708	NM_033632.3	548																																																																																
TNFAIP3	7128	MSKCC	GRCh37	6	138202373	138202373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	62	599	0	ENST00000237289.4:c.2290G>A	p.Ala764Thr	p.A764T	ENST00000237289	NM_001270507.1	764	Gcc/Acc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287477	33287477	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	101	664	0	ENST00000374542.5:c.1620del	p.Ser541ProfsTer3	p.S541Pfs*3	ENST00000374542	NM_001141970.1	540	ccC/cc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978624	70978624	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	87	569	0	ENST00000276594.2:c.1029G>C	p.Gln343His	p.Q343H	ENST00000276594	NM_024504.3	343	caG/caC																																																																															
JAK2	3717	MSKCC	GRCh37	9	5044443	5044443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	19	392	0	ENST00000381652.3:c.391G>A	p.Ala131Thr	p.A131T	ENST00000381652	NM_004972.3	131	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750600586		P-0087362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			22	268	392	2	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249037	55249038	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0087362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	357	448	6	ENST00000275493.2:c.2335_2336delinsTT	p.Gly779Phe	p.G779F	ENST00000275493	NM_005228.3	779	GGc/TTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29664845	29664845	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	111	307	0	ENST00000358273.4:c.6651G>C	p.Met2217Ile	p.M2217I	ENST00000358273	NM_001042492.2	2217	atG/atC																																																																															
RET	5979	MSKCC	GRCh37	10	43597915	43597915	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	183	472	2	ENST00000355710.3:c.463C>A	p.Pro155Thr	p.P155T	ENST00000355710	NM_020975.4	155	Cca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112178583	112178583	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	310	360	1	ENST00000257430.4:c.7292G>T	p.Arg2431Ile	p.R2431I	ENST00000257430	NM_000038.5	2431	aGa/aTa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040612	47040612	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0087362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			10	176	231	1	ENST00000329236.7:c.1015-2A>T		p.X339_splice	ENST00000329236	NM_001204466.1	339																																																																																
IKZF1	10320	MSKCC	GRCh37	7	50468107	50468107	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	288	431	2	ENST00000331340.3:c.1342G>T	p.Ala448Ser	p.A448S	ENST00000331340	NM_006060.4	448	Gcg/Tcg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032557	47032557	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0087405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	16	239	0	ENST00000329236.7:c.232C>T	p.Gln78Ter	p.Q78*	ENST00000329236	NM_001204466.1	78	Caa/Taa																																																																															
CBL	867	MSKCC	GRCh37	11	119170432	119170432	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	33	417	0	ENST00000264033.4:c.2662G>T	p.Ala888Ser	p.A888S	ENST00000264033	NM_005188.3	888	Gcc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0087405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	38	294	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0087409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	196	415	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0087409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	63	425	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0087409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	80	281	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
STAT3	6774	MSKCC	GRCh37	17	40476850	40476850	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0087409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	89	521	0	ENST00000264657.5:c.1479del	p.Phe493LeufsTer16	p.F493Lfs*16	ENST00000264657	NM_139276.2	493	ttT/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0087409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	94	309	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
AKT2	208	MSKCC	GRCh37	19	40739806	40739806	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	126	525	0	ENST00000392038.2:c.1419C>G	p.Phe473Leu	p.F473L	ENST00000392038	NM_001626.4	473	ttC/ttG																																																																															
ESR1	2099	MSKCC	GRCh37	6	152415685	152415685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	77	501	0	ENST00000206249.3:c.1535C>T	p.Ser512Phe	p.S512F	ENST00000206249	NM_000125.3	512	tCc/tTc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244319	41244320	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0087409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	71	440	0	ENST00000357654.3:c.3228_3229del	p.Gly1077AlafsTer8	p.G1077Afs*8	ENST00000357654	NM_007294.3	1076	agAGgg/aggg																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944770	31944770	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	122	212	0	ENST00000340398.3:c.331G>T	p.Ala111Ser	p.A111S	ENST00000340398	NM_001013699.2	111	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	113	430	0	ENST00000269305.4:c.542G>C	p.Arg181Pro	p.R181P	ENST00000269305	NM_001126112.2	181	cGc/cCc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602305	10602305	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0087402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	130	382	0	ENST00000171111.5:c.1273A>T	p.Ile425Phe	p.I425F	ENST00000171111	NM_203500.1	425	Atc/Ttc																																																																															
CBL	867	MSKCC	GRCh37	11	119103257	119103257	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0087402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	83	380	0	ENST00000264033.4:c.295T>A	p.Leu99Met	p.L99M	ENST00000264033	NM_005188.3	99	Ttg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0087411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	138	511	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0087411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	59	472	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964125	28964125	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377395740		P-0087411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	50	380	0	ENST00000282397.4:c.1777C>T	p.Arg593Trp	p.R593W	ENST00000282397	NM_002019.4	593	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951964	178951964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	59	400	0	ENST00000263967.3:c.3019G>C	p.Gly1007Arg	p.G1007R	ENST00000263967	NM_006218.2	1007	Ggc/Cgc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435294	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGT	GGCGGCGGT	-	rs538782363		P-0087411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	60	533	0	ENST00000375856.3:c.3099_3107del	p.Pro1034_Pro1036del	p.P1034_P1036del	ENST00000375856	NM_003749.2	1033	ccACCGCCGCCg/ccg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0087411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	65	329	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956777	68956777	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771902674		P-0087411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	37	333	0	ENST00000288368.4:c.895C>T	p.Arg299Trp	p.R299W	ENST00000288368	NM_024870.2	299	Cgg/Tgg																																																																															
PARP1	142	MSKCC	GRCh37	1	226574110	226574110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	96	397	0	ENST00000366794.5:c.751G>A	p.Glu251Lys	p.E251K	ENST00000366794	NM_001618.3	251	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447084	49447084	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0087411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	39	444	0	ENST00000301067.7:c.860A>C	p.Lys287Thr	p.K287T	ENST00000301067	NM_003482.3	287	aAg/aCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25403684	25403684	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0087411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	40	403	0	ENST00000256078.4:c.-12+1G>T		p.X4_splice	ENST00000256078	NM_033360.2	4																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153244224	153244224	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0087411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	146	436	0	ENST00000281708.4:c.1933A>C	p.Thr645Pro	p.T645P	ENST00000281708	NM_033632.3	645	Act/Cct																																																																															
AR	367	MSKCC	GRCh37	X	66931287	66931287	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0087411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	23	212	1	ENST00000374690.3:c.1929A>C	p.Glu643Asp	p.E643D	ENST00000374690	NM_000044.3	643	gaA/gaC																																																																															
TP63	8626	MSKCC	GRCh37	3	189612191	189612191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	33	463	0	ENST00000264731.3:c.1943A>G	p.Gln648Arg	p.Q648R	ENST00000264731	NM_003722.4	648	cAg/cGg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71008439	71008439	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0087411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	44	411	0	ENST00000318789.4:c.1993A>T	p.Arg665Ter	p.R665*	ENST00000318789	NM_032682.5	665	Aga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175462	112175465	+	frameshift_variant	Frame_Shift_Del	DEL	AGTT	AGTT	-			P-0087411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	91	423	0	ENST00000257430.4:c.4171_4174del	p.Ser1391HisfsTer23	p.S1391Hfs*23	ENST00000257430	NM_000038.5	1391	AGTTca/ca																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410797	63410798	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGC			P-0087411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	95	238	0	ENST00000330258.3:c.2366_2369dup	p.Asp791LeufsTer2	p.D791Lfs*2	ENST00000330258	NM_152424.3	790	tct/tcGCTCt																																																																															
TP63	8626	MSKCC	GRCh37	3	189582019	189582019	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0087411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	81	440	0	ENST00000264731.3:c.580-2A>C		p.X194_splice	ENST00000264731	NM_003722.4	194																																																																																
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747342068		P-0086631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	59	516	0	ENST00000269305.4:c.394A>G	p.Lys132Glu	p.K132E	ENST00000269305	NM_001126112.2	132	Aag/Gag																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101908873	101908873	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs200595614		P-0086631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	42	440	0	ENST00000374994.4:c.1237C>T	p.Arg413Ter	p.R413*	ENST00000374994	NM_004612.2	413	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445149	49445149	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	46	613	1	ENST00000301067.7:c.2317del	p.Gln773SerfsTer157	p.Q773Sfs*157	ENST00000301067	NM_003482.3	773	Cag/ag																																																																															
ERG	2078	MSKCC	GRCh37	21	39817460	39817460	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774083516		P-0086631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	48	475	0	ENST00000288319.7:c.103G>A	p.Ala35Thr	p.A35T	ENST00000288319	NM_182918.3	35	Gcg/Acg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0086631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	31	409	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52438530	52438530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	47	555	0	ENST00000460680.1:c.1189G>T	p.Asp397Tyr	p.D397Y	ENST00000460680	NM_004656.3	397	Gat/Tat																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061146	38061186	+	frameshift_variant	Frame_Shift_Del	DEL	TCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGC	TCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGC	-			P-0086758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	113	502	0	ENST00000250448.2:c.803_843del	p.Cys268Ter	p.C268*	ENST00000250448	NM_004496.3	268	tGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGA/t																																																																															
ATR	545	MSKCC	GRCh37	3	142224075	142224075	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	151	541	0	ENST00000350721.4:c.5102C>G	p.Ser1701Cys	p.S1701C	ENST00000350721	NM_001184.3	1701	tCt/tGt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932209	36932209	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	142	591	0	ENST00000361632.4:c.2260C>A	p.Gln754Lys	p.Q754K	ENST00000361632		754	Cag/Aag																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78938101	78938101	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1044306323		P-0086871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			52	24	525	0	ENST00000306801.3:c.3979G>A	p.Val1327Met	p.V1327M	ENST00000306801	NM_020761.2	1327	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7590693	7590693	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0086871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			16	16	556	0	ENST00000269305.4:c.-29+2T>C		p.X10_splice	ENST00000269305	NM_001126112.2	10																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3778653	3778653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			514	166	459	0	ENST00000262367.5:c.6395G>T	p.Gly2132Val	p.G2132V	ENST00000262367	NM_004380.2	2132	gGc/gTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602473	10602473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			273	145	489	0	ENST00000171111.5:c.1105G>T	p.Val369Leu	p.V369L	ENST00000171111	NM_203500.1	369	Gtg/Ttg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112365	115112365	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751549922		P-0087348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	29	399	0	ENST00000257566.3:c.1375C>T	p.Arg459Cys	p.R459C	ENST00000257566	NM_016569.3	459	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0087348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			145	51	288	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1219380	1219381	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0087348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			247	123	363	0	ENST00000326873.7:c.432_433delinsTT	p.Glu145Ter	p.E145*	ENST00000326873	NM_000455.4	144	ccGGag/ccTTag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223968	36223968	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775118818		P-0087348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			431	144	440	0	ENST00000222270.7:c.6518G>A	p.Arg2173Gln	p.R2173Q	ENST00000222270	NM_014727.1	2173	cGg/cAg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437848	52437848	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0087348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			387	31	356	0	ENST00000460680.1:c.1313C>G	p.Ser438Ter	p.S438*	ENST00000460680	NM_004656.3	438	tCa/tGa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562887	21562887	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0087348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			545	30	472	0	ENST00000382592.4:c.1032del	p.Gln345ArgfsTer88	p.Q345Rfs*88	ENST00000382592	NM_014572.2	344	ccG/cc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11129638	11129638	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0087348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	136	395	0	ENST00000344626.4:c.2444T>C	p.Leu815Pro	p.L815P	ENST00000344626	NM_003072.3	815	cTg/cCg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424832	47424832	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0087348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			463	129	407	0	ENST00000404338.3:c.2900T>C	p.Val967Ala	p.V967A	ENST00000404338	NM_004491.4	967	gTg/gCg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953903	17953903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087348-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			279	157	471	0	ENST00000458235.1:c.499G>T	p.Val167Leu	p.V167L	ENST00000458235	NM_000215.3	167	Gtg/Ttg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936080	150936080	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0087382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	30	547	0	ENST00000271640.5:c.3534del	p.Lys1178AsnfsTer140	p.K1178Nfs*140	ENST00000271640	NM_001145415.1	1178	Aaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0087385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	86	458	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0087385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	110	588	3	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
FANCC	2176	MSKCC	GRCh37	9	97888859	97888860	+	missense_variant	Missense_Mutation	DNP	TG	TG	GA			P-0087385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	71	446	0	ENST00000289081.3:c.847_848delinsTC	p.Gln283Ser	p.Q283S	ENST00000289081	NM_000136.2	283	CAa/TCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0087450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	96	541	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
EP300	2033	MSKCC	GRCh37	22	41513296	41513296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	30	513	0	ENST00000263253.7:c.200G>A	p.Ser67Asn	p.S67N	ENST00000263253	NM_001429.3	67	aGt/aAt																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2039838	2039838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780944879		P-0087456-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	96	571	0	ENST00000349721.2:c.728C>T	p.Pro243Leu	p.P243L	ENST00000349721	NM_003070.3	243	cCg/cTg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45658348	45658348	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0087456-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	29	287	0	ENST00000407780.3:c.38T>G	p.Phe13Cys	p.F13C	ENST00000407780	NM_001283052.1	13	tTc/tGc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437734	110437734	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087456-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	62	427	0	ENST00000375856.3:c.667G>C	p.Ala223Pro	p.A223P	ENST00000375856	NM_003749.2	223	Gcg/Ccg																																																																															
ATR	545	MSKCC	GRCh37	3	142171981	142171981	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087456-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	77	318	0	ENST00000350721.4:c.7750G>C	p.Val2584Leu	p.V2584L	ENST00000350721	NM_001184.3	2584	Gtc/Ctc																																																																															
LYN	4067	MSKCC	GRCh37	8	56910946	56910946	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0087456-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	85	417	0	ENST00000519728.1:c.1092T>G	p.Ile364Met	p.I364M	ENST00000519728	NM_002350.3	364	atT/atG																																																																															
MED12	9968	MSKCC	GRCh37	X	70349940	70349941	+	missense_variant	Missense_Mutation	DNP	AA	AA	TT			P-0087456-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	95	272	0	ENST00000374080.3:c.3923_3924inv	p.Gln1308Leu	p.Q1308L	ENST00000374080		1308	cAA/cTT																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465358	120465358	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069580-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			299	163	703	0	ENST00000256646.2:c.4903G>T	p.Asp1635Tyr	p.D1635Y	ENST00000256646	NM_024408.3	1635	Gac/Tac																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150917546	150917546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069580-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			427	137	646	0	ENST00000271640.5:c.1102G>A	p.Glu368Lys	p.E368K	ENST00000271640	NM_001145415.1	368	Gag/Aag																																																																															
AXL	558	MSKCC	GRCh37	19	41748895	41748895	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138883984		P-0069580-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			319	142	622	0	ENST00000301178.4:c.1420C>T	p.Arg474Trp	p.R474W	ENST00000301178	NM_021913.4	474	Cgg/Tgg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24145549	24145549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069580-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			174	129	680	1	ENST00000263121.7:c.568C>T	p.Arg190Trp	p.R190W	ENST00000263121	NM_003073.3	190	Cgg/Tgg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89444989	89444989	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0069580-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			900	74	606	0	ENST00000336596.2:c.1309C>T	p.Pro437Ser	p.P437S	ENST00000336596	NM_005233.5	437	Cca/Tca																																																																															
KDR	3791	MSKCC	GRCh37	4	55980321	55980321	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069580-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			246	75	550	0	ENST00000263923.4:c.770A>C	p.Asp257Ala	p.D257A	ENST00000263923	NM_002253.2	257	gAc/gCc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157505558	157505558	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069580-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			281	106	563	0	ENST00000346085.5:c.3539C>G	p.Pro1180Arg	p.P1180R	ENST00000346085	NM_020732.3	1180	cCg/cGg																																																																															
MET	4233	MSKCC	GRCh37	7	116411875	116411890	+	intron_variant	Intron	DEL	CAAGCTCTTTCTTTCT	CAAGCTCTTTCTTTCT	-			P-0069580-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			137	349	797	0	ENST00000397752.3:c.2888-27_2888-12del		p.*963*	ENST00000397752	NM_000245.2																																																																																	
MET	4233	MSKCC	GRCh37	7	116417463	116417463	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913244		P-0069580-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			83	221	540	0	ENST00000397752.3:c.3280C>T	p.His1094Tyr	p.H1094Y	ENST00000397752	NM_000245.2	1094	Cat/Tat																																																																															
MET	4233	MSKCC	GRCh37	7	116423407	116423407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913671		P-0069580-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			192	120	512	0	ENST00000397752.3:c.3682G>C	p.Asp1228His	p.D1228H	ENST00000397752	NM_000245.2	1228	Gac/Cac																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739879	41739879	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069580-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			404	153	577	0	ENST00000242208.4:c.94G>T	p.Ala32Ser	p.A32S	ENST00000242208	NM_002192.2	32	Gcc/Tcc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021813	69021813	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1335626366		P-0069580-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			208	111	532	0	ENST00000288368.4:c.3101A>C	p.Gln1034Pro	p.Q1034P	ENST00000288368	NM_024870.2	1034	cAg/cCg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021836	69021836	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069580-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			204	107	532	0	ENST00000288368.4:c.3124A>G	p.Met1042Val	p.M1042V	ENST00000288368	NM_024870.2	1042	Atg/Gtg																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643441	38643441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085831-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			610	83	307	4	ENST00000299084.4:c.911C>T	p.Ser304Leu	p.S304L	ENST00000299084	NM_152594.2	304	tCa/tTa																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2047309	2047309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085831-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			131	23	81	2	ENST00000349721.2:c.871C>T	p.Pro291Ser	p.P291S	ENST00000349721	NM_003070.3	291	Ccc/Tcc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47058649	47058650	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TACT			P-0085831-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			619	72	323	4	ENST00000409792.3:c.7625_7628dup	p.Tyr2543Ter	p.Y2543*	ENST00000409792	NM_014159.6	2543	tac/taAGTAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0086141-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			240	95	299	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041049	29041049	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0086141-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	94	374	0	ENST00000282397.4:c.379T>A	p.Phe127Ile	p.F127I	ENST00000282397	NM_002019.4	127	Ttt/Att																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44920586	44920587	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0086141-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			136	80	257	0	ENST00000377967.4:c.1348_1349del	p.Ser450TrpfsTer34	p.S450Wfs*34	ENST00000377967	NM_021140.2	449	tgGAgt/tggt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0086144-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			275	126	625	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0086144-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			310	170	741	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0086144-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			317	180	720	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489541	56489541	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772747085		P-0086144-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			491	141	605	0	ENST00000267101.3:c.2006G>A	p.Arg669His	p.R669H	ENST00000267101	NM_001982.3	669	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0086144-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	70	451	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0086357-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	126	351	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604784	48604807	+	inframe_deletion	In_Frame_Del	DEL	CTAGACGAAGTACTTCATACCATG	CTAGACGAAGTACTTCATACCATG	-			P-0086357-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			280	135	425	0	ENST00000342988.3:c.1607_1630del	p.Leu536_Met543del	p.L536_M543del	ENST00000342988	NM_005359.5	536	CTAGACGAAGTACTTCATACCATG/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0086357-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			294	417	346	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032536	47032536	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0086357-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			428	122	387	0	ENST00000329236.7:c.211C>T	p.Gln71Ter	p.Q71*	ENST00000329236	NM_001204466.1	71	Cag/Tag																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488670	231488670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086357-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			376	71	524	0	ENST00000295050.7:c.1033G>A	p.Gly345Ser	p.G345S	ENST00000295050	NM_032018.5	345	Ggt/Agt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519972		P-0086405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	238	347	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5246039	5246039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	79	361	0	ENST00000357368.4:c.736C>T	p.Arg246Cys	p.R246C	ENST00000357368	NM_002850.3	246	Cgc/Tgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653797	89653797	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0086405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	30	261	0	ENST00000371953.3:c.95T>G	p.Ile32Ser	p.I32S	ENST00000371953	NM_000314.4	32	aTt/aGt																																																																															
PGR	5241	MSKCC	GRCh37	11	100999230	100999231	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0086405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	173	424	0	ENST00000325455.5:c.571_572delinsAA	p.Pro191Lys	p.P191K	ENST00000325455	NM_001202474.3	191	CCa/AAa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324637	31324638	+	missense_variant	Missense_Mutation	DNP	GA	GA	AC			P-0086405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	275	263	0	ENST00000412585.2:c.170_171delinsGT	p.Phe57Cys	p.F57C	ENST00000412585	NM_005514.6	57	tTC/tGT																																																																															
MTOR	2475	MSKCC	GRCh37	1	11303211	11303211	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0086405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	248	390	0	ENST00000361445.4:c.1372A>C	p.Ile458Leu	p.I458L	ENST00000361445	NM_004958.3	458	Atc/Ctc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857917	9857917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	72	425	0	ENST00000330684.3:c.3484G>T	p.Asp1162Tyr	p.D1162Y	ENST00000330684	NM_001134407.1	1162	Gac/Tac																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0086434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	21	257	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221229	1221229	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	34	302	1	ENST00000326873.7:c.752G>T	p.Gly251Val	p.G251V	ENST00000326873	NM_000455.4	251	gGt/gTt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891294	101891308	+	inframe_deletion	In_Frame_Del	DEL	ATGTGCACCCTCTTC	ATGTGCACCCTCTTC	-			P-0086434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	31	263	0	ENST00000374994.4:c.256_270del	p.Cys86_Ser90del	p.C86_S90del	ENST00000374994	NM_004612.2	85	gtATGTGCACCCTCTTCa/gta																																																																															
USP8	9101	MSKCC	GRCh37	15	50788049	50788049	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	24	220	0	ENST00000307179.4:c.2663A>G	p.Asp888Gly	p.D888G	ENST00000307179		888	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs760043106		P-0086734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	158	402	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																															
APC	324	MSKCC	GRCh37	5	112128164	112128164	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0086734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	50	181	0	ENST00000257430.4:c.667C>T	p.Gln223Ter	p.Q223*	ENST00000257430	NM_000038.5	223	Caa/Taa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11168338	11168338	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	92	256	0	ENST00000361445.4:c.7534G>C	p.Asp2512His	p.D2512H	ENST00000361445	NM_004958.3	2512	Gac/Cac																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519617	137519617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	72	301	0	ENST00000367739.4:c.1021G>A	p.Gly341Arg	p.G341R	ENST00000367739	NM_000416.2	341	Gga/Aga																																																																															
TET1	80312	MSKCC	GRCh37	10	70406711	70406711	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0086734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	27	227	0	ENST00000373644.4:c.4225A>T	p.Asn1409Tyr	p.N1409Y	ENST00000373644	NM_030625.2	1409	Aac/Tac																																																																															
RARA	5914	MSKCC	GRCh37	17	38510573	38510573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	18	366	0	ENST00000254066.5:c.827G>A	p.Arg276Gln	p.R276Q	ENST00000254066	NM_000964.3	276	cGg/cAg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176720937	176720937	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	19	440	0	ENST00000439151.2:c.6568A>G	p.Met2190Val	p.M2190V	ENST00000439151	NM_022455.4	2190	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578213	7578214	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-	rs1131691030		P-0086888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	104	691	0	ENST00000269305.4:c.635_636del	p.Phe212SerfsTer3	p.F212Sfs*3	ENST00000269305	NM_001126112.2	212	tTT/t																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0086888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	84	389	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1918707	1918707	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0086888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	52	538	0	ENST00000382895.3:c.870T>G	p.Phe290Leu	p.F290L	ENST00000382895	NM_133330.2	290	ttT/ttG																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741838	145741838	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	118	684	0	ENST00000428558.2:c.665C>G	p.Pro222Arg	p.P222R	ENST00000428558	NM_004260.3	222	cCt/cGt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582834	95582834	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0086888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	38	574	0	ENST00000343455.3:c.1708A>T	p.Lys570Ter	p.K570*	ENST00000343455	NM_177438.2	570	Aaa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0086892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	47	424	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817908	3817908	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0086892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	53	465	0	ENST00000262367.5:c.3063G>A	p.Met1021Ile	p.M1021I	ENST00000262367	NM_004380.2	1021	atG/atA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0086892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	64	571	1	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577359	64577359	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	63	527	0	ENST00000337652.1:c.223C>A	p.Leu75Ile	p.L75I	ENST00000337652	NM_130803.2	75	Ctc/Atc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412637	63412637	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	14	572	0	ENST00000330258.3:c.530G>T	p.Arg177Leu	p.R177L	ENST00000330258	NM_152424.3	177	cGc/cTc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817862	3817862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	48	512	0	ENST00000262367.5:c.3109G>A	p.Asp1037Asn	p.D1037N	ENST00000262367	NM_004380.2	1037	Gac/Aac																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0086918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	95	348	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0087370-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	167	273	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0087370-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	153	418	0	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0087370-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	125	354	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3656642	3656642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087370-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	63	432	0	ENST00000294008.3:c.593C>T	p.Pro198Leu	p.P198L	ENST00000294008	NM_032444.2	198	cCa/cTa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	52	504	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	83	356	0	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	45	355	1	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9783301	9783301	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763402967		P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	75	533	1	ENST00000377346.4:c.2545G>A	p.Ala849Thr	p.A849T	ENST00000377346	NM_005026.3	849	Gcc/Acc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	93	552	0	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	52	389	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	85	588	3	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099332	157099333	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA	rs780268024		P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	26	512	0	ENST00000346085.5:c.285_287dup	p.His96dup	p.H96dup	ENST00000346085	NM_020732.3	96	gcc/gcCCAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	78	446	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932171	39932171	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	79	276	0	ENST00000378444.4:c.2428C>T	p.Arg810Ter	p.R810*	ENST00000378444	NM_001123385.1	810	Cga/Tga																																																																															
ROS1	6098	MSKCC	GRCh37	6	117638420	117638420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	74	483	0	ENST00000368508.3:c.6021del	p.Asn2008ThrfsTer3	p.N2008Tfs*3	ENST00000368508	NM_002944.2	2007	ccC/cc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	39	509	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	49	563	2	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	66	591	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43733757	43733757	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	61	288	0	ENST00000382044.4:c.3065del	p.Asn1022MetfsTer20	p.N1022Mfs*20	ENST00000382044	NM_001141980.1	1022	aAt/at																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15965426	15965426	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	82	435	1	ENST00000268712.3:c.5380C>T	p.Arg1794Ter	p.R1794*	ENST00000268712	NM_006311.3	1794	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332617	153332617	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs769623850		P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	70	567	0	ENST00000281708.4:c.339G>T	p.Glu113Asp	p.E113D	ENST00000281708	NM_033632.3	113	gaG/gaT																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783665	50783665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374624194		P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	48	423	0	ENST00000398568.2:c.56G>A	p.Arg19Gln	p.R19Q	ENST00000398568	NM_001042412.1	19	cGg/cAg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663328	227663328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	53	458	0	ENST00000305123.5:c.127C>T	p.Arg43Cys	p.R43C	ENST00000305123	NM_005544.2	43	Cgc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15284904	15284904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	56	517	0	ENST00000263388.2:c.4711C>T	p.Arg1571Trp	p.R1571W	ENST00000263388	NM_000435.2	1571	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	39	297	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100519	157100519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	14	280	0	ENST00000346085.5:c.1456G>A	p.Ala486Thr	p.A486T	ENST00000346085	NM_020732.3	486	Gcc/Acc																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51504657	51504657	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121434536		P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	63	470	0	ENST00000260433.2:c.1123C>T	p.Arg375Cys	p.R375C	ENST00000260433		375	Cgc/Tgc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77043843	77043843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	66	500	0	ENST00000356341.3:c.1483C>T	p.Arg495Trp	p.R495W	ENST00000356341	NM_002576.4	495	Cgg/Tgg																																																																															
BARD1	580	MSKCC	GRCh37	2	215645472	215645472	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	23	545	0	ENST00000260947.4:c.1126T>C	p.Ser376Pro	p.S376P	ENST00000260947	NM_000465.2	376	Tca/Cca																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719839	61719839	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	60	384	0	ENST00000401558.2:c.1429A>G	p.Thr477Ala	p.T477A	ENST00000401558	NM_003400.3	477	Aca/Gca																																																																															
FYN	2534	MSKCC	GRCh37	6	111983017	111983017	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	63	569	0	ENST00000368678.4:c.1530del	p.Phe510LeufsTer45	p.F510Lfs*45	ENST00000368678		510	ttT/tt																																																																															
CDK8	1024	MSKCC	GRCh37	13	26967645	26967645	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	45	362	0	ENST00000381527.3:c.788C>T	p.Ala263Val	p.A263V	ENST00000381527	NM_001260.1	263	gCa/gTa																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445768	29445769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCCA			P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	29	513	1	ENST00000544604.2:c.1600_1604dup	p.His535GlnfsTer37	p.H535Qfs*37	ENST00000544604	NM_001206998.1	533	-/GGCCA																																																																															
CTR9	9646	MSKCC	GRCh37	11	10794788	10794788	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	68	467	0	ENST00000361367.2:c.2695A>T	p.Lys899Ter	p.K899*	ENST00000361367	NM_014633.3	899	Aaa/Taa																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150933226	150933226	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	87	509	0	ENST00000271640.5:c.2688G>T	p.Glu896Asp	p.E896D	ENST00000271640	NM_001145415.1	896	gaG/gaT																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923059	39923059	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0087372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			32	242	258	1	ENST00000378444.4:c.3649C>T	p.Arg1217Ter	p.R1217*	ENST00000378444	NM_001123385.1	1217	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0087372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	202	440	2	ENST00000269305.4:c.97-1G>T		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
ARHGAP35	2909	MSKCC	GRCh37	19	47423408	47423408	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0087372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	216	385	0	ENST00000404338.3:c.1476T>A	p.Phe492Leu	p.F492L	ENST00000404338	NM_004491.4	492	ttT/ttA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55211010	55211010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	63	378	0	ENST00000275493.2:c.253G>A	p.Val85Met	p.V85M	ENST00000275493	NM_005228.3	85	Gtg/Atg																																																																															
KLF5	688	MSKCC	GRCh37	13	73633700	73633710	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCTGCCTCC	CGGCTGCCTCC	-			P-0087372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	190	232	1	ENST00000377687.4:c.235_245del	p.Leu80GlyfsTer8	p.L80Gfs*8	ENST00000377687	NM_001730.3	79	CGGCTGCCTCCa/a																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060576	38060577	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0087372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	309	589	2	ENST00000250448.2:c.1411_1412dup	p.Ser472LeufsTer13	p.S472Lfs*13	ENST00000250448	NM_004496.3	471	act/acACt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	229	535	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
CDKN2B-AS1	100048912	MSKCC	GRCh37	9	21994138	21994138	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	54	355	0				ENST00000428597																																																																																		
EZH2	2146	MSKCC	GRCh37	7	148523560	148523560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	34	302	0	ENST00000320356.2:c.893G>A	p.Arg298His	p.R298H	ENST00000320356	NM_004456.4	298	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023145	27023162	+	inframe_deletion	In_Frame_Del	DEL	GCGGCGGCGGAGCCGGCA	GCGGCGGCGGAGCCGGCA	-	rs749452696		P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	30	344	0	ENST00000324856.7:c.261_278del	p.Ala88_Gly93del	p.A88_G93del	ENST00000324856	NM_006015.4	84	gGCGGCGGCGGAGCCGGCAgc/ggc																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655194	45655194	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1218803422		P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	96	380	0	ENST00000407780.3:c.658G>A	p.Val220Met	p.V220M	ENST00000407780	NM_001283052.1	220	Gtg/Atg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256219	16256219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	76	455	0	ENST00000375759.3:c.3484G>A	p.Asp1162Asn	p.D1162N	ENST00000375759	NM_015001.2	1162	Gac/Aac																																																																															
ERF	2077	MSKCC	GRCh37	19	42759149	42759149	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	44	265	0	ENST00000222329.4:c.3G>A	p.Met1?	p.M1?	ENST00000222329	NM_006494.2	1	atG/atA																																																																															
KLF5	688	MSKCC	GRCh37	13	73649905	73649905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	104	383	0	ENST00000377687.4:c.1255G>C	p.Glu419Gln	p.E419Q	ENST00000377687	NM_001730.3	419	Gag/Cag																																																																															
BARD1	580	MSKCC	GRCh37	2	215593516	215593516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	71	415	0	ENST00000260947.4:c.2218G>A	p.Glu740Lys	p.E740K	ENST00000260947	NM_000465.2	740	Gaa/Aaa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117715438	117715438	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	81	359	0	ENST00000368508.3:c.1051G>T	p.Ala351Ser	p.A351S	ENST00000368508	NM_002944.2	351	Gcc/Tcc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29442781	29442781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	131	421	0	ENST00000544604.2:c.823del	p.Arg275GlyfsTer64	p.R275Gfs*64	ENST00000544604	NM_001206998.1	274	cgC/cg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349584	89349584	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	62	434	0	ENST00000301030.4:c.3366G>C	p.Glu1122Asp	p.E1122D	ENST00000301030	NM_001256183.1	1122	gaG/gaC																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14031704	14031708	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAC	AAAAC	-			P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	54	316	0	ENST00000311895.7:c.1893_1897del	p.Glu631AspfsTer12	p.E631Dfs*12	ENST00000311895	NM_005236.2	631	gaAAAACtc/gatc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185200197	185200197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	40	331	0	ENST00000265026.3:c.2854G>A	p.Asp952Asn	p.D952N	ENST00000265026	NM_004721.4	952	Gat/Aat																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138375000	138375000	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	55	371	0	ENST00000289153.2:c.3059A>G	p.Asp1020Gly	p.D1020G	ENST00000289153	NM_006219.2	1020	gAt/gGt																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51520040	51520040	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	21	321	0	ENST00000260433.2:c.387G>C	p.Glu129Asp	p.E129D	ENST00000260433		129	gaG/gaC																																																																															
FLT1	2321	MSKCC	GRCh37	13	28979923	28979923	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	38	312	0	ENST00000282397.4:c.1545G>C	p.Lys515Asn	p.K515N	ENST00000282397	NM_002019.4	515	aaG/aaC																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891313	101891313	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	83	343	0	ENST00000374994.4:c.274A>T	p.Thr92Ser	p.T92S	ENST00000374994	NM_004612.2	92	Act/Tct																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46608744	46608744	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	55	392	0	ENST00000263734.3:c.2055G>T	p.Lys685Asn	p.K685N	ENST00000263734	NM_001430.4	685	aaG/aaT																																																																															
PMS1	5378	MSKCC	GRCh37	2	190660502	190660502	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	94	371	0	ENST00000441310.2:c.140A>G	p.Tyr47Cys	p.Y47C	ENST00000441310	NM_000534.4	47	tAt/tGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421682	49421682	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	66	452	0	ENST00000301067.7:c.14547C>G	p.Ser4849Arg	p.S4849R	ENST00000301067	NM_003482.3	4849	agC/agG																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120479914	120479914	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	120	429	0	ENST00000256646.2:c.3513C>G	p.Tyr1171Ter	p.Y1171*	ENST00000256646	NM_024408.3	1171	taC/taG																																																																															
JAK1	3716	MSKCC	GRCh37	1	65301798	65301798	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	59	338	0	ENST00000342505.4:c.3241G>C	p.Asp1081His	p.D1081H	ENST00000342505	NM_002227.2	1081	Gat/Cat																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439671	51439671	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	65	422	0	ENST00000262662.1:c.236G>C	p.Arg79Thr	p.R79T	ENST00000262662		79	aGa/aCa																																																																															
GAB1	2549	MSKCC	GRCh37	4	144336719	144336719	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	38	312	0	ENST00000262994.4:c.162G>C	p.Lys54Asn	p.K54N	ENST00000262994	NM_002039.3	54	aaG/aaC																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347201	347201	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	35	326	0	ENST00000262320.3:c.1810A>T	p.Arg604Ter	p.R604*	ENST00000262320	NM_003502.3	604	Aga/Tga																																																																															
SCG5	6447	MSKCC	GRCh37	15	32972085	32972085	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	50	341	0	ENST00000300175.4:c.345C>A	p.Asp115Glu	p.D115E	ENST00000300175	NM_001144757.1	115	gaC/gaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs530941076		P-0087375-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	44	474	0	ENST00000269305.4:c.658T>A	p.Tyr220Asn	p.Y220N	ENST00000269305	NM_001126112.2	220	Tat/Aat																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0087421-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	46	432	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11217302	11217302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087421-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	51	482	0	ENST00000361445.4:c.4376C>A	p.Ala1459Asp	p.A1459D	ENST00000361445	NM_004958.3	1459	gCc/gAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47059127	47059127	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0087421-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	72	455	0	ENST00000409792.3:c.7533+1G>A		p.X2511_splice	ENST00000409792	NM_014159.6	2511																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151860449	151860449	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1485613651		P-0087421-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	67	583	0	ENST00000262189.6:c.10213C>T	p.Arg3405Ter	p.R3405*	ENST00000262189	NM_170606.2	3405	Cga/Tga																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435544	18435544	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087421-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	49	422	0	ENST00000266497.5:c.529C>A	p.Pro177Thr	p.P177T	ENST00000266497		177	Cca/Aca																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233119	46233119	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0087421-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	56	406	0	ENST00000334344.6:c.1338A>T	p.Leu446Phe	p.L446F	ENST00000334344	NM_152641.2	446	ttA/ttT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965688	93965688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087421-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	51	441	0	ENST00000369303.4:c.2240G>T	p.Arg747Ile	p.R747I	ENST00000369303	NM_004440.3	747	aGa/aTa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47155399	47155399	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0087421-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	40	448	0	ENST00000409792.3:c.4682G>T	p.Gly1561Val	p.G1561V	ENST00000409792	NM_014159.6	1561	gGc/gTc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14028126	14028126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	41	438	0	ENST00000311895.7:c.1180G>A	p.Glu394Lys	p.E394K	ENST00000311895	NM_005236.2	394	Gaa/Aaa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15297754	15297754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0087422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	46	483	0	ENST00000263388.2:c.1886G>A	p.Cys629Tyr	p.C629Y	ENST00000263388	NM_000435.2	629	tGc/tAc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821091	32821091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	47	625	0	ENST00000354258.4:c.503C>T	p.Pro168Leu	p.P168L	ENST00000354258	NM_000593.5	168	cCg/cTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95583964	95583964	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0087422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	33	444	0	ENST00000343455.3:c.1504del	p.Glu502LysfsTer21	p.E502Kfs*21	ENST00000343455	NM_177438.2	502	Gaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0087423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	66	564	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68930087	68930087	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0087423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	18	468	0	ENST00000288368.4:c.148T>G	p.Leu50Val	p.L50V	ENST00000288368	NM_024870.2	50	Tta/Gta																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602293	10602293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1320679251		P-0087423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	84	615	2	ENST00000171111.5:c.1285G>A	p.Gly429Ser	p.G429S	ENST00000171111	NM_203500.1	429	Ggc/Agc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593388	48593388	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0087423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	51	400	0	ENST00000342988.3:c.1140-1G>C		p.X380_splice	ENST00000342988	NM_005359.5	380																																																																																
AR	367	MSKCC	GRCh37	X	66937422	66937422	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0087423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	21	264	0	ENST00000374690.3:c.2276A>C	p.Asn759Thr	p.N759T	ENST00000374690	NM_000044.3	759	aAc/aCc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40864890	40864890	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0087423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	27	453	1	ENST00000373198.4:c.2378C>A	p.Ala793Asp	p.A793D	ENST00000373198	NM_133170.3	793	gCt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0087424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	42	340	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112137081	112137081	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0087424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	31	308	0	ENST00000257430.4:c.834+1G>A		p.X278_splice	ENST00000257430	NM_000038.5	278																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106508842	106508842	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0087424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	27	477	0	ENST00000359195.3:c.836A>G	p.Glu279Gly	p.E279G	ENST00000359195	NM_002649.2	279	gAg/gGg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0087438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	67	447	5	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820852	3820852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0087438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	95	510	0	ENST00000262367.5:c.2599C>T	p.Pro867Ser	p.P867S	ENST00000262367	NM_004380.2	867	Cca/Tca																																																																															
MGA	23269	MSKCC	GRCh37	15	42046753	42046753	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0087438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	85	527	4	ENST00000219905.7:c.7127C>G	p.Ser2376Ter	p.S2376*	ENST00000219905	NM_001164273.1	2376	tCa/tGa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0087441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	121	359	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101611	27101612	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0087441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	96	557	0	ENST00000324856.7:c.4899dup	p.Met1634HisfsTer14	p.M1634Hfs*14	ENST00000324856	NM_006015.4	1631	-/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0087441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	117	367	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59878708	59878708	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1184306036		P-0087441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	111	497	0	ENST00000259008.2:c.1046C>T	p.Ala349Val	p.A349V	ENST00000259008	NM_032043.2	349	gCc/gTc																																																																															
CTR9	9646	MSKCC	GRCh37	11	10797102	10797103	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0087441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	112	482	0	ENST00000361367.2:c.3022dup	p.Ile1008AsnfsTer11	p.I1008Nfs*11	ENST00000361367	NM_014633.3	1006	gga/ggAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0086460-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			178	311	212	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49415876	49415876	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1477916093		P-0086460-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			706	212	356	0	ENST00000301067.7:c.16471G>C	p.Glu5491Gln	p.E5491Q	ENST00000301067	NM_003482.3	5491	Gag/Cag																																																																															
RB1	5925	MSKCC	GRCh37	13	48955417	48955417	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs748352319		P-0086460-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			183	197	252	0	ENST00000267163.4:c.1535del	p.Leu512CysfsTer7	p.L512Cfs*7	ENST00000267163	NM_000321.2	511	gaT/ga																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544183	86544183	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1436850315		P-0086460-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	173	374	0	ENST00000262426.4:c.8C>T	p.Ser3Leu	p.S3L	ENST00000262426	NM_001451.2	3	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0086460-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			356	325	342	0	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
STK11	6794	MSKCC	GRCh37	19	1220579	1220579	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0086460-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			300	376	387	0	ENST00000326873.7:c.598del		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																																
NFE2L2	4780	MSKCC	GRCh37	2	178098807	178098807	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086460-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			446	356	325	0	ENST00000397062.3:c.238A>G	p.Thr80Ala	p.T80A	ENST00000397062	NM_006164.4	80	Aca/Gca																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51507343	51507343	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086460-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			462	122	327	0	ENST00000260433.2:c.945G>T	p.Leu315Phe	p.L315F	ENST00000260433		315	ttG/ttT																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544301	86544333	+	inframe_deletion	In_Frame_Del	DEL	CATCCGGCGCCCGGAGAAGCCGCCCTATTCCTA	CATCCGGCGCCCGGAGAAGCCGCCCTATTCCTA	-			P-0086460-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			471	142	357	1	ENST00000262426.4:c.130_162del	p.Arg44_Ile54del	p.R44_I54del	ENST00000262426	NM_001451.2	42	ggCATCCGGCGCCCGGAGAAGCCGCCCTATTCCTAc/ggc																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544609	86544609	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086460-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			480	152	396	0	ENST00000262426.4:c.434G>T	p.Arg145Leu	p.R145L	ENST00000262426	NM_001451.2	145	cGa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576881	7576881	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	214	462	0	ENST00000269305.4:c.965del	p.Pro322HisfsTer23	p.P322Hfs*23	ENST00000269305	NM_001126112.2	322	cCa/ca																																																																															
TP63	8626	MSKCC	GRCh37	3	189582168	189582168	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121908835		P-0086643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	209	325	0	ENST00000264731.3:c.727C>T	p.Arg243Trp	p.R243W	ENST00000264731	NM_003722.4	243	Cgg/Tgg																																																																															
KDR	3791	MSKCC	GRCh37	4	55976872	55976872	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs551579207		P-0086643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	121	321	0	ENST00000263923.4:c.1040G>A	p.Arg347His	p.R347H	ENST00000263923	NM_002253.2	347	cGt/cAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144147	11144147	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064795161		P-0086643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	373	330	0	ENST00000344626.4:c.3728G>A	p.Arg1243Gln	p.R1243Q	ENST00000344626	NM_003072.3	1243	cGg/cAg																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152861526	152861526	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	159	162	0	ENST00000406277.2:c.226T>C	p.Tyr76His	p.Y76H	ENST00000406277	NM_152274.4	76	Tac/Cac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0086862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	125	374	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	209	472	0	ENST00000269305.4:c.542G>C	p.Arg181Pro	p.R181P	ENST00000269305	NM_001126112.2	181	cGc/cCc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931463	131931463	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	42	299	0	ENST00000265335.6:c.2168A>G	p.Glu723Gly	p.E723G	ENST00000265335		723	gAa/gGa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401891	139401891	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0086862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	127	359	0	ENST00000277541.6:c.3511-2A>C		p.X1171_splice	ENST00000277541	NM_017617.3	1171																																																																																
ROS1	6098	MSKCC	GRCh37	6	117710983	117710983	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	34	326	0	ENST00000368508.3:c.1289G>C	p.Gly430Ala	p.G430A	ENST00000368508	NM_002944.2	430	gGc/gCc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31464344	31464344	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0086862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	44	312	0	ENST00000344624.3:c.2573A>T	p.Gln858Leu	p.Q858L	ENST00000344624		858	cAg/cTg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141078	55141078	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	45	334	0	ENST00000257290.5:c.1724T>A	p.Val575Glu	p.V575E	ENST00000257290	NM_006206.4	575	gTg/gAg																																																																															
CIC	23152	MSKCC	GRCh37	19	42794497	42794497	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0086862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	90	465	0	ENST00000575354.2:c.1577A>T	p.Lys526Ile	p.K526I	ENST00000575354	NM_015125.3	526	aAa/aTa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111467	8111467	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	65	347	0	ENST00000346208.3:c.953C>A	p.Ala318Glu	p.A318E	ENST00000346208		318	gCg/gAg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302914	15302914	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs142778401		P-0086862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	126	454	0	ENST00000263388.2:c.536G>T	p.Gly179Val	p.G179V	ENST00000263388	NM_000435.2	179	gGc/gTc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520283	176520283	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	26	246	0	ENST00000292408.4:c.1202G>T	p.Arg401Leu	p.R401L	ENST00000292408	NM_213647.1	401	cGc/cTc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243809214	243809214	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	61	316	0	ENST00000263826.5:c.410C>A	p.Thr137Lys	p.T137K	ENST00000263826	NM_005465.4	137	aCa/aAa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423565	88423565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	84	328	0	ENST00000360948.2:c.2270G>T	p.Gly757Val	p.G757V	ENST00000360948	NM_001012338.2	757	gGg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	390	269	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967092	25967092	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	124	346	0	ENST00000435504.4:c.2114G>C	p.Gly705Ala	p.G705A	ENST00000435504		705	gGt/gCt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591117	67591118	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	70	259	0	ENST00000274335.5:c.1711_1712del	p.Ile571ProfsTer30	p.I571Pfs*30	ENST00000274335		570	ctTAtc/cttc																																																																															
AR	367	MSKCC	GRCh37	X	66941712	66941712	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	86	303	0	ENST00000374690.3:c.2356G>T	p.Val786Phe	p.V786F	ENST00000374690	NM_000044.3	786	Gtc/Ttc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44732912	44732912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	176	267	0	ENST00000377967.4:c.115C>T	p.Pro39Ser	p.P39S	ENST00000377967	NM_021140.2	39	Ccc/Tcc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714412	40714412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			932	86	357	0	ENST00000373198.4:c.3985G>A	p.Glu1329Lys	p.E1329K	ENST00000373198	NM_133170.3	1329	Gag/Aag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100050	30100050	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369255115		P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			822	199	403	0	ENST00000331968.5:c.1570G>A	p.Val524Ile	p.V524I	ENST00000331968	NM_002742.2	524	Gtt/Att																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348700	11348700	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	107	275	0	ENST00000332029.2:c.636A>G	p.Ter212TrpextTer60	p.*212Wext*60	ENST00000332029	NM_003745.1	212	tgA/tgG																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561319	9561319	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs753315436		P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			935	169	343	0	ENST00000353224.5:c.463G>T	p.Asp155Tyr	p.D155Y	ENST00000353224	NM_177990.2	155	Gat/Tat																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15989749	15989749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	355	262	2	ENST00000268712.3:c.3024G>T	p.Gln1008His	p.Q1008H	ENST00000268712	NM_006311.3	1008	caG/caT																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238975	5238975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	106	300	0	ENST00000357368.4:c.1804C>A	p.Leu602Met	p.L602M	ENST00000357368	NM_002850.3	602	Ctg/Atg																																																																															
KLF5	688	MSKCC	GRCh37	13	73636189	73636189	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	210	343	0	ENST00000377687.4:c.452A>T	p.Tyr151Phe	p.Y151F	ENST00000377687	NM_001730.3	151	tAc/tTc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127577	55127577	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	107	281	0	ENST00000257290.5:c.365C>T	p.Pro122Leu	p.P122L	ENST00000257290	NM_006206.4	122	cCa/cTa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26029190	26029190	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	187	254	0	ENST00000435504.4:c.160G>T	p.Ala54Ser	p.A54S	ENST00000435504		54	Gca/Tca																																																																															
KDR	3791	MSKCC	GRCh37	4	55968085	55968085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760248367		P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	58	224	0	ENST00000263923.4:c.2245G>A	p.Glu749Lys	p.E749K	ENST00000263923	NM_002253.2	749	Gag/Aag																																																																															
SYK	6850	MSKCC	GRCh37	9	93641176	93641176	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	190	278	0	ENST00000375746.1:c.1522G>C	p.Ala508Pro	p.A508P	ENST00000375746	NM_001174167.1	508	Gcc/Ccc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123182925	123182925	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	63	201	0	ENST00000218089.9:c.890A>T	p.Tyr297Phe	p.Y297F	ENST00000218089	NM_001042749.1	297	tAc/tTc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18272266	18272266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	415	378	0	ENST00000222254.8:c.776C>A	p.Pro259Gln	p.P259Q	ENST00000222254	NM_005027.3	259	cCg/cAg																																																																															
TET1	80312	MSKCC	GRCh37	10	70404833	70404833	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	114	298	0	ENST00000373644.4:c.2347G>C	p.Gly783Arg	p.G783R	ENST00000373644	NM_030625.2	783	Ggc/Cgc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28611396	28611396	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	44	236	0	ENST00000241453.7:c.1235A>C	p.Gln412Pro	p.Q412P	ENST00000241453	NM_004119.2	412	cAg/cCg																																																																															
ATRX	546	MSKCC	GRCh37	X	76954068	76954069	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	102	177	0	ENST00000373344.5:c.182dup	p.Glu62GlyfsTer5	p.E62Gfs*5	ENST00000373344	NM_000489.3	61	aag/aaAg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555260	106555260	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	93	303	0	ENST00000369096.4:c.2377G>C	p.Glu793Gln	p.E793Q	ENST00000369096	NM_001198.3	793	Gag/Cag																																																																															
BTK	695	MSKCC	GRCh37	X	100630231	100630232	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	71	305	0	ENST00000308731.7:c.41_42delinsAA	p.Ser14Ter	p.S14*	ENST00000308731	NM_000061.2	14	tCC/tAA																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650343	48650343	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			780	104	377	0	ENST00000376670.3:c.313C>A	p.Pro105Thr	p.P105T	ENST00000376670	NM_002049.3	105	Cct/Act																																																																															
NADK	65220	MSKCC	GRCh37	1	1686895	1686895	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	93	304	0	ENST00000341426.5:c.606G>T	p.Met202Ile	p.M202I	ENST00000341426	NM_023018.4	202	atG/atT																																																																															
NADK	65220	MSKCC	GRCh37	1	1691303	1691303	+	intron_variant	Intron	SNP	G	G	A			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	95	352	0	ENST00000341426.5:c.263+2088C>T		p.*88*	ENST00000341426	NM_023018.4																																																																																	
SOX17	64321	MSKCC	GRCh37	8	55372210	55372210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			762	333	357	0	ENST00000297316.4:c.900G>A	p.Met300Ile	p.M300I	ENST00000297316	NM_022454.3	300	atG/atA																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865434	57865434	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			737	129	415	0	ENST00000228682.2:c.2911C>G	p.His971Asp	p.H971D	ENST00000228682	NM_005269.2	971	Cat/Gat																																																																															
BRCA1	672	MSKCC	GRCh37	17	41197769	41197769	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			699	73	332	0	ENST00000357654.3:c.5518G>C	p.Asp1840His	p.D1840H	ENST00000357654	NM_007294.3	1840	Gac/Cac																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670819	134670819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	95	366	0	ENST00000398015.3:c.730G>A	p.Gly244Arg	p.G244R	ENST00000398015	NM_004441.4	244	Ggg/Agg																																																																															
SDHA	6389	MSKCC	GRCh37	5	224546	224546	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	39	210	0	ENST00000264932.6:c.222G>C	p.Leu74Phe	p.L74F	ENST00000264932	NM_004168.2	74	ttG/ttC																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0085455-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	16	101	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0085455-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	93	425	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3642782	3642782	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753926402		P-0085961-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			487	51	413	4	ENST00000294008.3:c.2245C>T	p.Arg749Cys	p.R749C	ENST00000294008	NM_032444.2	749	Cgc/Tgc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31025067	31025067	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085961-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	113	446	0	ENST00000375687.4:c.4552G>C	p.Gly1518Arg	p.G1518R	ENST00000375687	NM_015338.5	1518	Ggc/Cgc																																																																															
KLF5	688	MSKCC	GRCh37	13	73650024	73650024	+	stop_lost	Nonstop_Mutation	SNP	A	A	T			P-0085961-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	42	374	0	ENST00000377687.4:c.1374A>T	p.Ter458CysextTer5	p.*458Cext*5	ENST00000377687	NM_001730.3	458	tgA/tgT																																																																															
TP53	7157	MSKCC	GRCh37	17	7579415	7579421	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGAGG	CAGGAGG	-			P-0085961-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			385	110	527	0	ENST00000269305.4:c.266_272del	p.Pro89ArgfsTer32	p.P89Rfs*32	ENST00000269305	NM_001126112.2	89	cCCTCCTGg/cg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576760	67576760	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085961-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			245	65	280	0	ENST00000274335.5:c.842A>G	p.Asp281Gly	p.D281G	ENST00000274335		281	gAt/gGt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44928929	44928929	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0086134-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			41	149	106	0	ENST00000377967.4:c.2029C>T	p.Gln677Ter	p.Q677*	ENST00000377967	NM_021140.2	677	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441798	49441798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086134-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			320	182	268	0	ENST00000301067.7:c.4186G>A	p.Ala1396Thr	p.A1396T	ENST00000301067	NM_003482.3	1396	Gcc/Acc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37676318	37676318	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086134-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			307	36	200	0	ENST00000447079.4:c.3073C>G	p.Leu1025Val	p.L1025V	ENST00000447079	NM_015083.1	1025	Ctc/Gtc																																																																															
APC	324	MSKCC	GRCh37	5	112176046	112176059	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGTCATCACGTA	AAAGTCATCACGTA	-			P-0086134-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			231	25	378	0	ENST00000257430.4:c.4757_4770del	p.Lys1586SerfsTer41	p.K1586Sfs*41	ENST00000257430	NM_000038.5	1585	acAAAGTCATCACGTAaa/acaa																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025543	1025543	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0086142-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			422	35	406	0	ENST00000358495.3:c.832C>T	p.Arg278Ter	p.R278*	ENST00000358495	NM_134424.2	278	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0086142-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			144	34	248	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0086142-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			519	58	529	1	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771831816		P-0086142-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			532	71	548	0	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729962	30729962	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs104893819		P-0086142-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			458	44	374	0	ENST00000359013.4:c.1558C>T	p.Arg520Ter	p.R520*	ENST00000359013	NM_001024847.2	520	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971114	21971115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGTCGGGTGAGAGTGGCG			P-0086142-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	51	454	0	ENST00000304494.5:c.225_243dup	p.Val82ArgfsTer44	p.V82Rfs*44	ENST00000304494	NM_000077.4	81	-/CGCCACTCTCACCCGACCC																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713266	30713267	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGTTCAACCTGGGAAACCGGCA			P-0086142-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			524	31	418	0	ENST00000359013.4:c.669_690dup	p.Thr231PhefsTer25	p.T231Ffs*25	ENST00000359013	NM_001024847.2	222	-/AGTTCAACCTGGGAAACCGGCA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49449083	49449083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	43	367	0	ENST00000301067.7:c.25G>A	p.Glu9Lys	p.E9K	ENST00000301067	NM_003482.3	9	Gag/Aag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298078	15298078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	92	446	0	ENST00000263388.2:c.1678G>T	p.Val560Leu	p.V560L	ENST00000263388	NM_000435.2	560	Gtg/Ttg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4123780	4123781	+	stop_gained,frameshift_variant,splice_region_variant	Nonsense_Mutation	INS	-	-	TCAT			P-0086377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	68	383	0	ENST00000262948.5:c.92_92+1insATGA	p.Ala32Ter	p.A32*	ENST00000262948	NM_030662.3	31	gag/gaATGAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517847	187517847	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202133523		P-0086594-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	89	403	0	ENST00000441802.2:c.12847G>A	p.Glu4283Lys	p.E4283K	ENST00000441802	NM_005245.3	4283	Gaa/Aaa																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150931775	150931775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086594-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	115	352	0	ENST00000271640.5:c.2452C>T	p.Arg818Cys	p.R818C	ENST00000271640	NM_001145415.1	818	Cgc/Tgc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870895	12870895	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0086594-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	418	400	0	ENST00000228872.4:c.122T>A	p.Leu41Ter	p.L41*	ENST00000228872	NM_004064.3	41	tTa/tAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923669	72923669	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0086594-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	169	436	0	ENST00000268489.5:c.3409C>T	p.Gln1137Ter	p.Q1137*	ENST00000268489	NM_006885.3	1137	Cag/Tag																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625386	69625386	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782272422		P-0086708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	133	230	0	ENST00000334134.2:c.407C>T	p.Thr136Met	p.T136M	ENST00000334134	NM_005247.2	136	aCg/aTg																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538909	23538909	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs373263457		P-0086709-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	17	370	0	ENST00000380871.4:c.530A>G	p.Tyr177Cys	p.Y177C	ENST00000380871	NM_006167.3	177	tAt/tGt																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727451	66727451	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519729		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	11	340	0	ENST00000307102.5:c.167A>C	p.Gln56Pro	p.Q56P	ENST00000307102	NM_002755.3	56	cAg/cCg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026994	71026994	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147756430		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	117	452	0	ENST00000318789.4:c.1333G>A	p.Val445Met	p.V445M	ENST00000318789	NM_032682.5	445	Gtg/Atg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	52	376	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	184	437	4	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519841		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	21	310	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	95	389	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478786	56478786	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1324972550		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	90	323	0	ENST00000267101.3:c.242G>A	p.Arg81Gln	p.R81Q	ENST00000267101	NM_001982.3	81	cGa/cAa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266134	41266136	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	74	396	0	ENST00000349496.5:c.133_135del	p.Ser45del	p.S45del	ENST00000349496	NM_001904.3	44	cCTTct/cct																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	30	280	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56494873	56494873	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752248295		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	149	324	0	ENST00000267101.3:c.3230G>A	p.Arg1077Gln	p.R1077Q	ENST00000267101	NM_001982.3	1077	cGg/cAg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295801	212295801	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1423325504		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	54	313	0	ENST00000342788.4:c.2512C>T	p.Arg838Ter	p.R838*	ENST00000342788	NM_005235.2	838	Cga/Tga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	65	447	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138096	2138096	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45517391		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	81	433	0	ENST00000219476.3:c.5116C>T	p.Arg1706Cys	p.R1706C	ENST00000219476	NM_000548.3	1706	Cgc/Tgc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022592	31022592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs373221034		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	40	446	2	ENST00000375687.4:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000375687	NM_015338.5	693	Cga/Tga																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	106	422	6	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347748	347748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	59	347	0	ENST00000262320.3:c.1758del	p.Asn587ThrfsTer118	p.N587Tfs*118	ENST00000262320	NM_003502.3	586	ccC/cc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923087	39923087	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	85	186	0	ENST00000378444.4:c.3621del	p.Lys1207AsnfsTer31	p.K1207Nfs*31	ENST00000378444	NM_001123385.1	1207	aaA/aa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417337	139417337	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs537766290		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	52	364	1	ENST00000277541.6:c.707C>T	p.Thr236Met	p.T236M	ENST00000277541	NM_017617.3	236	aCg/aTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120178	70120178	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057518216		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	15	267	1	ENST00000245479.2:c.1180C>T	p.Arg394Ter	p.R394*	ENST00000245479	NM_000346.3	394	Cga/Tga																																																																															
BRD4	23476	MSKCC	GRCh37	19	15374343	15374343	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199679781		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	81	312	0	ENST00000263377.2:c.1229G>A	p.Arg410His	p.R410H	ENST00000263377	NM_058243.2	410	cGt/cAt																																																																															
AKT1	207	MSKCC	GRCh37	14	105241459	105241459	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1200003171		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	77	427	0	ENST00000349310.3:c.521G>A	p.Arg174His	p.R174H	ENST00000349310	NM_001014432.1	174	cGc/cAc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533938	63533939	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	55	324	0	ENST00000307078.5:c.1214_1215dup	p.Gly406ArgfsTer53	p.G406Rfs*53	ENST00000307078	NM_004655.3	405	-/AG																																																																															
BCL10	8915	MSKCC	GRCh37	1	85736510	85736511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs387906351		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	86	370	2	ENST00000370580.1:c.136dup	p.Ile46AsnfsTer4	p.I46Nfs*4	ENST00000370580	NM_003921.4	46	ata/aAta																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266486	41266486	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs775104326		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	68	365	1	ENST00000349496.5:c.283C>T	p.Arg95Ter	p.R95*	ENST00000349496	NM_001904.3	95	Cga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543829	212543829	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771154734		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	28	318	0	ENST00000342788.4:c.1570C>T	p.Arg524Cys	p.R524C	ENST00000342788	NM_005235.2	524	Cgc/Tgc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119582446	119582446	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs768552900		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	57	320	0	ENST00000316626.5:c.955C>T	p.Arg319Ter	p.R319*	ENST00000316626		319	Cga/Tga																																																																															
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	70	284	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																															
MGA	23269	MSKCC	GRCh37	15	42042300	42042301	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs866465268		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	107	432	0	ENST00000219905.7:c.6499_6500del	p.Leu2167GlyfsTer27	p.L2167Gfs*27	ENST00000219905	NM_001164273.1	2165	gaCTct/gact																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738518	145738518	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368611522		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	46	297	0	ENST00000428558.2:c.2467G>A	p.Glu823Lys	p.E823K	ENST00000428558	NM_004260.3	823	Gaa/Aaa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246061	41246061	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28897677		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	105	387	0	ENST00000357654.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000357654	NM_007294.3	496	cGt/cAt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416952	416953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs771545848		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	83	452	4	ENST00000399788.2:c.3597dup	p.Gly1200ArgfsTer7	p.G1200Rfs*7	ENST00000399788	NM_001042603.1	1199	-/A																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395129	139395129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	75	382	0	ENST00000277541.6:c.5809C>T	p.Arg1937Cys	p.R1937C	ENST00000277541	NM_017617.3	1937	Cgc/Tgc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459858	149459858	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs566891025		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	58	328	1	ENST00000286301.3:c.349G>A	p.Val117Met	p.V117M	ENST00000286301	NM_005211.3	117	Gtg/Atg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681829	30681829	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs774216207		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	117	410	0	ENST00000376406.3:c.268C>T	p.Arg90Ter	p.R90*	ENST00000376406	NM_014641.2	90	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589576	67589576	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1289537429		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	59	256	0	ENST00000274335.5:c.1344del	p.Lys448AsnfsTer32	p.K448Nfs*32	ENST00000274335		447	Aaa/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099906	27099906	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140125151		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	100	382	0	ENST00000324856.7:c.3785G>A	p.Arg1262His	p.R1262H	ENST00000324856	NM_006015.4	1262	cGt/cAt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138112	64138112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	54	336	0	ENST00000334205.4:c.2035G>A	p.Ala679Thr	p.A679T	ENST00000334205	NM_003942.2	679	Gcg/Acg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	359972	359972	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	63	306	0	ENST00000262320.3:c.1116+1G>A		p.X372_splice	ENST00000262320	NM_003502.3	372																																																																																
AGO2	27161	MSKCC	GRCh37	8	141561417	141561417	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1487711892		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	87	380	0	ENST00000220592.5:c.1388C>T	p.Thr463Met	p.T463M	ENST00000220592	NM_012154.3	463	aCg/aTg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813797	50813797	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200451975		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	60	387	0	ENST00000398568.2:c.1351G>A	p.Val451Ile	p.V451I	ENST00000398568	NM_001042412.1	451	Gtc/Atc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589609	67589610	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	19	257	0	ENST00000274335.5:c.1378dup	p.Ser460LysfsTer5	p.S460Kfs*5	ENST00000274335		458	gaa/gAaa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99451930	99451930	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752186919		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	42	366	0	ENST00000268035.6:c.1264G>A	p.Val422Ile	p.V422I	ENST00000268035	NM_000875.3	422	Gtc/Atc																																																																															
RARA	5914	MSKCC	GRCh37	17	38511593	38511593	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1353021557		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	25	314	0	ENST00000254066.5:c.1091G>A	p.Arg364Gln	p.R364Q	ENST00000254066	NM_000964.3	364	cGg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	153	349	2	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14015969	14015969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760327512		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	56	300	0	ENST00000311895.7:c.289C>T	p.Arg97Cys	p.R97C	ENST00000311895	NM_005236.2	97	Cgc/Tgc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867355	45867355	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781402308		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	74	414	0	ENST00000391945.4:c.838C>T	p.Arg280Cys	p.R280C	ENST00000391945	NM_000400.3	280	Cgc/Tgc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639237	3639237	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760497928		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	54	403	0	ENST00000294008.3:c.4402C>T	p.Arg1468Cys	p.R1468C	ENST00000294008	NM_032444.2	1468	Cgc/Tgc																																																																															
TEK	7010	MSKCC	GRCh37	9	27158131	27158131	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772321726		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	64	366	2	ENST00000380036.4:c.355C>T	p.Arg119Cys	p.R119C	ENST00000380036	NM_000459.3	119	Cgt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434709	49434709	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587783726		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	62	426	0	ENST00000301067.7:c.6844C>T	p.Arg2282Trp	p.R2282W	ENST00000301067	NM_003482.3	2282	Cgg/Tgg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2124298	2124298	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	13	395	0	ENST00000219476.3:c.2453T>C	p.Ile818Thr	p.I818T	ENST00000219476	NM_000548.3	818	aTc/aCc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77090411	77090411	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs937721392		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	81	327	0	ENST00000356341.3:c.314G>A	p.Arg105His	p.R105H	ENST00000356341	NM_002576.4	105	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5258061	5258061	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773920614		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	46	326	0	ENST00000357368.4:c.673C>T	p.Arg225Cys	p.R225C	ENST00000357368	NM_002850.3	225	Cgc/Tgc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109962	115109962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	48	327	0	ENST00000257566.3:c.1916G>A	p.Arg639His	p.R639H	ENST00000257566	NM_016569.3	639	cGc/cAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211362	98211362	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759791227		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	33	309	0	ENST00000331920.6:c.3793G>A	p.Ala1265Thr	p.A1265T	ENST00000331920	NM_000264.3	1265	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220916	36220918	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	51	385	0	ENST00000222270.7:c.4970_4972del	p.Ser1657del	p.S1657del	ENST00000222270	NM_014727.1	1656	TCC/-																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182683388	182683388	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	30	255	0	ENST00000292782.4:c.157C>T	p.Arg53Ter	p.R53*	ENST00000292782	NM_020640.2	53	Cga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248356	212248356	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760087458		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	56	346	0	ENST00000342788.4:c.3911G>A	p.Arg1304Gln	p.R1304Q	ENST00000342788	NM_005235.2	1304	cGg/cAg																																																																															
BCL6	604	MSKCC	GRCh37	3	187440364	187440364	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1426858162		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	53	316	0	ENST00000232014.4:c.2003G>A	p.Arg668His	p.R668H	ENST00000232014	NM_001130845.1	668	cGt/cAt																																																																															
SDHC	6391	MSKCC	GRCh37	1	161298256	161298256	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778661		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	74	292	2	ENST00000367975.2:c.148C>T	p.Arg50Cys	p.R50C	ENST00000367975	NM_003001.3	50	Cgt/Tgt																																																																															
CASP8	841	MSKCC	GRCh37	2	202137439	202137440	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	71	344	0	ENST00000358485.4:c.669_670del	p.Ala224ProfsTer14	p.A224Pfs*14	ENST00000358485	NM_001080125.1	223	TGt/t																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027021	71027021	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1278430300		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	129	448	0	ENST00000318789.4:c.1306C>T	p.Arg436Cys	p.R436C	ENST00000318789	NM_032682.5	436	Cgc/Tgc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52595935	52595935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	80	351	0	ENST00000394830.3:c.3980G>A	p.Arg1327Gln	p.R1327Q	ENST00000394830	NM_018313.4	1327	cGg/cAg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422684	47422684	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1298488368		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	100	362	0	ENST00000404338.3:c.752G>A	p.Arg251Gln	p.R251Q	ENST00000404338	NM_004491.4	251	cGg/cAg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715721	30715721	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893816		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	87	368	0	ENST00000359013.4:c.1454G>A	p.Arg485His	p.R485H	ENST00000359013	NM_001024847.2	485	cGc/cAc																																																																															
SDHA	6389	MSKCC	GRCh37	5	235282	235282	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	32	233	0	ENST00000264932.6:c.1088A>G	p.His363Arg	p.H363R	ENST00000264932	NM_004168.2	363	cAc/cGc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81929516	81929516	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760949449		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	50	392	0	ENST00000359376.3:c.1177G>A	p.Ala393Thr	p.A393T	ENST00000359376	NM_002661.3	393	Gcc/Acc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	69	435	0	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612866	228612866	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138699472		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	58	489	0	ENST00000366696.1:c.161G>A	p.Arg54His	p.R54H	ENST00000366696	NM_003493.2	54	cGc/cAc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21344765	21344765	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs869320686		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	55	354	0	ENST00000215739.8:c.742G>A	p.Gly248Arg	p.G248R	ENST00000215739	NM_006767.3	248	Gga/Aga																																																																															
SRC	6714	MSKCC	GRCh37	20	36014555	36014555	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772219397		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	66	328	0	ENST00000358208.4:c.328C>T	p.Arg110Trp	p.R110W	ENST00000358208		110	Cgg/Tgg																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63983318	63983318	+	intron_variant	Intron	SNP	C	C	T	rs370385147		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	66	277	0	ENST00000295900.6:c.2661+1159C>T		p.*887*	ENST00000295900	NM_000333.3																																																																																	
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62321444	62321444	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs200003693		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	80	341	0	ENST00000482936.1:c.2146G>A	p.Ala716Thr	p.A716T	ENST00000482936		716	Gcc/Acc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346157	89346157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	38	345	0	ENST00000301030.4:c.6793G>A	p.Ala2265Thr	p.A2265T	ENST00000301030	NM_001256183.1	2265	Gcc/Acc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46205199	46205199	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	73	260	0	ENST00000334344.6:c.285-2A>G		p.X95_splice	ENST00000334344	NM_152641.2	95																																																																																
UPF1	5976	MSKCC	GRCh37	19	18972934	18972934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	57	321	1	ENST00000262803.5:c.2573G>A	p.Arg858His	p.R858H	ENST00000262803	NM_002911.3	858	cGt/cAt																																																																															
GAB2	9846	MSKCC	GRCh37	11	77991935	77991935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	64	387	0	ENST00000361507.4:c.88C>T	p.Arg30Cys	p.R30C	ENST00000361507	NM_080491.2	30	Cgc/Tgc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177588	56177588	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1432892470		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	75	366	0	ENST00000399503.3:c.2561G>A	p.Arg854His	p.R854H	ENST00000399503	NM_005921.1	854	cGc/cAc																																																																															
GAB1	2549	MSKCC	GRCh37	4	144359619	144359619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	36	372	0	ENST00000262994.4:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000262994	NM_002039.3	354	cGa/cAa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513295	44513295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	101	359	0	ENST00000291552.4:c.640G>A	p.Gly214Ser	p.G214S	ENST00000291552	NM_006758.2	214	Ggc/Agc																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225432	26225432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			832	212	482	0	ENST00000360408.1:c.50C>T	p.Pro17Leu	p.P17L	ENST00000360408	NM_003532.2	17	cCg/cTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10244956	10244956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	29	270	0	ENST00000340748.4:c.4753G>A	p.Ala1585Thr	p.A1585T	ENST00000340748		1585	Gcc/Acc																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858422	27858422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	112	481	0	ENST00000359303.2:c.149G>A	p.Arg50His	p.R50H	ENST00000359303	NM_003535.2	50	cGt/cAt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180045853	180045853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768369889		P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	24	389	0	ENST00000261937.6:c.2918G>A	p.Arg973Gln	p.R973Q	ENST00000261937	NM_182925.4	973	cGg/cAg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980565	1980565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	73	365	0	ENST00000382895.3:c.4027C>T	p.Pro1343Ser	p.P1343S	ENST00000382895	NM_133330.2	1343	Cca/Tca																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981473	70981473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	36	408	0	ENST00000276594.2:c.623G>A	p.Gly208Glu	p.G208E	ENST00000276594	NM_024504.3	208	gGg/gAg																																																																															
LMO1	4004	MSKCC	GRCh37	11	8246264	8246265	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	46	319	0	ENST00000335790.3:c.369_370del	p.Phe123LeufsTer20	p.F123Lfs*20	ENST00000335790	NM_002315.2	123	ttTTgt/ttgt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15964816	15964816	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	35	358	0	ENST00000268712.3:c.5780T>C	p.Ile1927Thr	p.I1927T	ENST00000268712	NM_006311.3	1927	aTt/aCt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89156932	89156932	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	48	327	0	ENST00000336596.2:c.34A>G	p.Ser12Gly	p.S12G	ENST00000336596	NM_005233.5	12	Agc/Ggc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344568	118344568	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	89	376	0	ENST00000534358.1:c.2694A>C	p.Glu898Asp	p.E898D	ENST00000534358	NM_005933.3	898	gaA/gaC																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575082	64575083	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	99	375	0	ENST00000337652.1:c.738_739dup	p.Ala247ValfsTer40	p.A247Vfs*40	ENST00000337652	NM_130803.2	247	gcc/gTGcc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324481	31324483	+	inframe_deletion	In_Frame_Del	DEL	GTA	GTA	-			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	22	241	0	ENST00000412585.2:c.325_327del	p.Tyr109del	p.Y109del	ENST00000412585	NM_005514.6	109	TAC/-																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803516	32803516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	87	349	0	ENST00000374899.4:c.643A>G	p.Thr215Ala	p.T215A	ENST00000374899	NM_018833.2	215	Acc/Gcc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47641523	47641525	+	frameshift_variant	Frame_Shift_Del	DEL	ATA	ATA	CT			P-0086713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	50	237	1	ENST00000233146.2:c.908_910delinsCT	p.Asp303AlafsTer28	p.D303Afs*28	ENST00000233146	NM_000251.2	303	gATAtt/gCTtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0086732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	76	418	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210421	2210421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	53	325	0	ENST00000398665.3:c.1028G>T	p.Arg343Leu	p.R343L	ENST00000398665	NM_032482.2	343	cGc/cTc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075120	16075133	+	frameshift_variant	Frame_Shift_Del	DEL	CTTAGCATCTGCAG	CTTAGCATCTGCAG	-			P-0086732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	51	285	0	ENST00000268712.3:c.419_432del	p.Ser140Ter	p.S140*	ENST00000268712	NM_006311.3	140	tCTGCAGATGCTAAG/t																																																																															
NF1	4763	MSKCC	GRCh37	17	29528427	29528427	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T	rs1373365576		P-0086732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	41	242	0	ENST00000358273.4:c.1186-2A>T		p.X396_splice	ENST00000358273	NM_001042492.2	396																																																																																
JAK3	3718	MSKCC	GRCh37	19	17949167	17949167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	41	381	0	ENST00000458235.1:c.1474C>T	p.His492Tyr	p.H492Y	ENST00000458235	NM_000215.3	492	Cac/Tac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488718	212488718	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	43	410	0	ENST00000342788.4:c.2131C>A	p.Arg711Ser	p.R711S	ENST00000342788	NM_005235.2	711	Cgt/Agt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543840	212543840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	132	324	0	ENST00000342788.4:c.1559G>A	p.Cys520Tyr	p.C520Y	ENST00000342788	NM_005235.2	520	tGt/tAt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200026	128200027	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0086732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	61	441	0	ENST00000341105.2:c.1278_1279delinsAG	p.Pro427Ala	p.P427A	ENST00000341105	NM_032638.4	426	tcCCcc/tcAGcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0086735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	37	209	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0086735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	60	391	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1023835002		P-0086735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	20	332	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0086735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	96	436	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0086735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	194	433	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0086735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	70	336	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268138	153268138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1406877044		P-0086735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	74	335	0	ENST00000281708.4:c.670C>T	p.Arg224Ter	p.R224*	ENST00000281708	NM_033632.3	224	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0086735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	196	257	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883786	37883786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	120	437	0	ENST00000269571.5:c.3398G>A	p.Cys1133Tyr	p.C1133Y	ENST00000269571		1133	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112175693	112176060	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCTTGTTCATCCAGCCTGAGTGCTCTGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGGAATGAAACAGAATCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTCATCACGTAA	AAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCTTGTTCATCCAGCCTGAGTGCTCTGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGGAATGAAACAGAATCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTCATCACGTAA	-			P-0086735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	173	440	0	ENST00000257430.4:c.4403_4770del	p.Lys1468SerfsTer41	p.K1468Sfs*41	ENST00000257430	NM_000038.5	1468	AAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCTTGTTCATCCAGCCTGAGTGCTCTGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGGAATGAAACAGAATCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTCATCACGTAAa/a																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857727	9857727	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0086735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	117	488	0	ENST00000330684.3:c.3674C>A	p.Ser1225Ter	p.S1225*	ENST00000330684	NM_001134407.1	1225	tCa/tAa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17948022	17948022	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0086735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	207	311	0	ENST00000458235.1:c.1702T>A	p.Ser568Thr	p.S568T	ENST00000458235	NM_000215.3	568	Tca/Aca																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120051	70120059	+	inframe_deletion	In_Frame_Del	DEL	GGCCCCGCC	GGCCCCGCC	-	rs761585795		P-0086735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	72	362	0	ENST00000245479.2:c.1061_1069del	p.Pro354_Pro356del	p.P354_P356del	ENST00000245479	NM_000346.3	351	caGGCCCCGCCg/cag																																																																															
ATRX	546	MSKCC	GRCh37	X	76912053	76912053	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	43	241	0	ENST00000373344.5:c.4211C>G	p.Thr1404Arg	p.T1404R	ENST00000373344	NM_000489.3	1404	aCa/aGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0086736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	47	331	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
NEGR1	257194	MSKCC	GRCh37	1	71873224	71873224	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756093179		P-0086736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	45	382	0	ENST00000357731.5:c.970G>A	p.Gly324Arg	p.G324R	ENST00000357731	NM_173808.2	324	Ggg/Agg																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154381	2154381	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1372848092		P-0086736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	32	396	0	ENST00000434045.2:c.547C>T	p.Arg183Cys	p.R183C	ENST00000434045	NM_001127598.1	183	Cgc/Tgc																																																																															
MPL	4352	MSKCC	GRCh37	1	43806073	43806073	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0086736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	10	330	0	ENST00000372470.3:c.869A>C	p.Gln290Pro	p.Q290P	ENST00000372470	NM_005373.2	290	cAa/cCa																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321360	1321360	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	62	268	0	ENST00000381566.1:c.395A>G	p.Asp132Gly	p.D132G	ENST00000381566		132	gAt/gGt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007298	143007298	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0086738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	48	238	0	ENST00000262992.4:c.2486C>G	p.Thr829Arg	p.T829R	ENST00000262992	NM_001101669.1	829	aCg/aGg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231764	66231764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	34	254	0	ENST00000273854.3:c.1936G>A	p.Gly646Arg	p.G646R	ENST00000273854	NM_004439.5	646	Gga/Aga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214738	36214738	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	116	279	0	ENST00000222270.7:c.3164G>T	p.Arg1055Leu	p.R1055L	ENST00000222270	NM_014727.1	1055	cGg/cTg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143191857	143191857	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	73	319	0	ENST00000262992.4:c.574G>T	p.Gly192Trp	p.G192W	ENST00000262992	NM_001101669.1	192	Ggg/Tgg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748110	41748110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	49	295	0	ENST00000226382.2:c.659C>T	p.Pro220Leu	p.P220L	ENST00000226382	NM_003924.3	220	cCg/cTg																																																																															
MET	4233	MSKCC	GRCh37	7	116411862	116411862	+	intron_variant	Intron	SNP	T	T	G			P-0086738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	214	460	0	ENST00000397752.3:c.2888-41T>G		p.*963*	ENST00000397752	NM_000245.2																																																																																	
ROS1	6098	MSKCC	GRCh37	6	117717384	117717384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	94	313	0	ENST00000368508.3:c.823G>T	p.Ala275Ser	p.A275S	ENST00000368508	NM_002944.2	275	Gca/Tca																																																																															
RAD50	10111	MSKCC	GRCh37	5	131953935	131953935	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	60	236	0	ENST00000265335.6:c.3338C>A	p.Thr1113Lys	p.T1113K	ENST00000265335		1113	aCa/aAa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610635	10610635	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	68	380	0	ENST00000171111.5:c.75G>T	p.Glu25Asp	p.E25D	ENST00000171111	NM_203500.1	25	gaG/gaT																																																																															
AR	367	MSKCC	GRCh37	X	66765789	66765789	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0086738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	95	451	0	ENST00000374690.3:c.801C>A	p.Cys267Ter	p.C267*	ENST00000374690	NM_000044.3	267	tgC/tgA																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950820	38950820	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0086738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	62	289	0	ENST00000357387.3:c.3130A>T	p.Met1044Leu	p.M1044L	ENST00000357387	NM_152756.3	1044	Atg/Ttg																																																																															
NF1	4763	MSKCC	GRCh37	17	29554299	29554299	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	142	303	0	ENST00000358273.4:c.2315G>T	p.Gly772Val	p.G772V	ENST00000358273	NM_001042492.2	772	gGa/gTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220485	1220505	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CCGACCTGGGCGTGGCCGAGG	CCGACCTGGGCGTGGCCGAGG	-			P-0086738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	143	379	0	ENST00000326873.7:c.578_597+1del		p.X193_splice	ENST00000326873	NM_000455.4	193																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134968201	134968201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	71	355	0	ENST00000398015.3:c.2714G>T	p.Arg905Leu	p.R905L	ENST00000398015	NM_004441.4	905	cGc/cTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518181	8518181	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	104	333	0	ENST00000356435.5:c.1210C>A	p.Pro404Thr	p.P404T	ENST00000356435		404	Ccc/Acc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29444443	29444443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	63	350	0	ENST00000544604.2:c.979C>T	p.His327Tyr	p.H327Y	ENST00000544604	NM_001206998.1	327	Cac/Tac																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157469952	157469952	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	58	416	0	ENST00000346085.5:c.2746A>G	p.Met916Val	p.M916V	ENST00000346085	NM_020732.3	916	Atg/Gtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0086739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	26	152	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907164	101907164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	46	309	0	ENST00000374994.4:c.1124C>A	p.Thr375Lys	p.T375K	ENST00000374994	NM_004612.2	375	aCa/aAa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907037	101907037	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	53	294	0	ENST00000374994.4:c.997G>T	p.Asp333Tyr	p.D333Y	ENST00000374994	NM_004612.2	333	Gat/Tat																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324917	31324917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	96	436	0	ENST00000412585.2:c.19del	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000412585	NM_005514.6	7	Cga/ga																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001429	29001429	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753144948		P-0086739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	74	395	0	ENST00000282397.4:c.1303G>A	p.Val435Met	p.V435M	ENST00000282397	NM_002019.4	435	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0086739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	85	260	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TEK	7010	MSKCC	GRCh37	9	27209157	27209157	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0086739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	41	294	0	ENST00000380036.4:c.2614G>T	p.Glu872Ter	p.E872*	ENST00000380036	NM_000459.3	872	Gaa/Taa																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910700	29910701	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0086739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	74	471	0	ENST00000376809.5:c.242dup	p.Glu82GlyfsTer17	p.E82Gfs*17	ENST00000376809	NM_002116.7	80	-/C																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348201	89348201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	81	451	0	ENST00000301030.4:c.4749C>A	p.Phe1583Leu	p.F1583L	ENST00000301030	NM_001256183.1	1583	ttC/ttA																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557543	21557543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	93	472	0	ENST00000382592.4:c.2302G>T	p.Ala768Ser	p.A768S	ENST00000382592	NM_014572.2	768	Gcc/Tcc																																																																															
APC	324	MSKCC	GRCh37	5	112175735	112175736	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0086739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	75	462	0	ENST00000257430.4:c.4446dup	p.Pro1483SerfsTer4	p.P1483Sfs*4	ENST00000257430	NM_000038.5	1482	ctt/cTtt																																																																															
APC	324	MSKCC	GRCh37	5	112174082	112174084	+	frameshift_variant	Frame_Shift_Del	DEL	CAT	CAT	A			P-0086739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	50	450	0	ENST00000257430.4:c.2791_2793delinsA	p.His931IlefsTer8	p.H931Ifs*8	ENST00000257430	NM_000038.5	931	CAT/A																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29207791	29207794	+	start_lost	Translation_Start_Site	ONP	ACCA	ACCA	GCCG			P-0086739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	56	375	0	ENST00000240100.2:c.2_5delinsCGGC	p.MetVal1_?2	p.MV1_?2	ENST00000240100	NM_001394.6	1	aTGGTg/aCGGCg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112602	115112602	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs865915137		P-0086753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	39	429	1	ENST00000257566.3:c.1138G>A	p.Glu380Lys	p.E380K	ENST00000257566	NM_016569.3	380	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579519	7579519	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0086753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	140	442	0	ENST00000269305.4:c.168del	p.Asp57ThrfsTer66	p.D57Tfs*66	ENST00000269305	NM_001126112.2	56	gaA/ga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610382	10610382	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	125	452	0	ENST00000171111.5:c.328A>G	p.Met110Val	p.M110V	ENST00000171111	NM_203500.1	110	Atg/Gtg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15379846	15379846	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	90	288	0	ENST00000263377.2:c.293A>G	p.Tyr98Cys	p.Y98C	ENST00000263377	NM_058243.2	98	tAt/tGt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120660	94120660	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	36	383	0	ENST00000369303.4:c.391G>T	p.Asp131Tyr	p.D131Y	ENST00000369303	NM_004440.3	131	Gac/Tac																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120512229	120512229	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	72	418	0	ENST00000256646.2:c.1013A>T	p.Asn338Ile	p.N338I	ENST00000256646	NM_024408.3	338	aAc/aTc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243708812	243708813	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0086753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	35	232	0	ENST00000263826.5:c.1250dup	p.Leu418AlafsTer6	p.L418Afs*6	ENST00000263826	NM_005465.4	417	aag/aaAg																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112764509	112764509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	39	311	0	ENST00000369452.4:c.1118G>A	p.Gly373Glu	p.G373E	ENST00000369452	NM_007373.3	373	gGa/gAa																																																																															
TET1	80312	MSKCC	GRCh37	10	70451146	70451146	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	68	447	0	ENST00000373644.4:c.5986G>C	p.Asp1996His	p.D1996H	ENST00000373644	NM_030625.2	1996	Gac/Cac																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610635	52610635	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0086753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	129	361	0	ENST00000394830.3:c.3538G>T	p.Glu1180Ter	p.E1180*	ENST00000394830	NM_018313.4	1180	Gag/Tag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405725	139405725	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0086753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	124	309	0	ENST00000277541.6:c.2468-2A>T		p.X823_splice	ENST00000277541	NM_017617.3	823																																																																																
PTCH1	5727	MSKCC	GRCh37	9	98244424	98244424	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	83	349	0	ENST00000331920.6:c.646A>G	p.Met216Val	p.M216V	ENST00000331920	NM_000264.3	216	Atg/Gtg																																																																															
BTK	695	MSKCC	GRCh37	X	100604932	100604932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	104	309	0	ENST00000308731.7:c.1921C>A	p.Arg641Ser	p.R641S	ENST00000308731	NM_000061.2	641	Cgt/Agt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913296	39913296	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0086753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	46	403	0	ENST00000378444.4:c.4820-1G>C		p.X1607_splice	ENST00000378444	NM_001123385.1	1607																																																																																
PTEN	5728	MSKCC	GRCh37	10	89653808	89653808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	75	296	0	ENST00000371953.3:c.106G>A	p.Gly36Arg	p.G36R	ENST00000371953	NM_000314.4	36	Gga/Aga																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702191	47702191	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs41295288		P-0086754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	58	357	0	ENST00000233146.2:c.1787A>G	p.Asn596Ser	p.N596S	ENST00000233146	NM_000251.2	596	aAt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578440	7578440	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs879254249		P-0086754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	125	444	0	ENST00000269305.4:c.490A>G	p.Lys164Glu	p.K164E	ENST00000269305	NM_001126112.2	164	Aag/Gag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916924	178916924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225060		P-0086754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	62	326	0	ENST00000263967.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000263967	NM_006218.2	104	cCa/cTa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245241	46245241	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	125	421	0	ENST00000334344.6:c.3335A>G	p.Gln1112Arg	p.Q1112R	ENST00000334344	NM_152641.2	1112	cAg/cGg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412260	63412260	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	93	546	0	ENST00000330258.3:c.907G>T	p.Gly303Cys	p.G303C	ENST00000330258	NM_152424.3	303	Ggc/Tgc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526508	31526508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	117	417	0	ENST00000344624.3:c.532C>T	p.Pro178Ser	p.P178S	ENST00000344624		178	Cca/Tca																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804163	46804163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752722523		P-0086754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	84	333	1	ENST00000290295.7:c.844G>A	p.Ala282Thr	p.A282T	ENST00000290295	NM_006361.5	282	Gct/Act																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857703	9857703	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	167	477	0	ENST00000330684.3:c.3698C>A	p.Pro1233His	p.P1233H	ENST00000330684	NM_001134407.1	1233	cCc/cAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923789	39923789	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1192993784		P-0086754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	94	405	0	ENST00000378444.4:c.3302C>T	p.Pro1101Leu	p.P1101L	ENST00000378444	NM_001123385.1	1101	cCt/cTt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876187	35876187	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	93	410	0	ENST00000303115.3:c.979A>G	p.Thr327Ala	p.T327A	ENST00000303115	NM_002185.3	327	Acg/Gcg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500753	8500753	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0086754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	92	330	0	ENST00000356435.5:c.2128+1G>T		p.X710_splice	ENST00000356435		710																																																																																
MGA	23269	MSKCC	GRCh37	15	42058880	42058880	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0086754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	97	411	0	ENST00000219905.7:c.8600T>G	p.Val2867Gly	p.V2867G	ENST00000219905	NM_001164273.1	2867	gTt/gGt																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664631	138664631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	102	312	0	ENST00000330315.3:c.934C>A	p.His312Asn	p.H312N	ENST00000330315	NM_023067.3	312	Cac/Aac																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1953843	1953843	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	85	347	0	ENST00000382895.3:c.2022G>C	p.Glu674Asp	p.E674D	ENST00000382895	NM_133330.2	674	gaG/gaC																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52649472	52649472	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0086754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	61	275	0	ENST00000394830.3:c.1819G>T	p.Val607Phe	p.V607F	ENST00000394830	NM_018313.4	607	Gtt/Ttt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931865	68931865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	67	390	0	ENST00000288368.4:c.295C>A	p.Pro99Thr	p.P99T	ENST00000288368	NM_024870.2	99	Cct/Act																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839862	27839862	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1224149403		P-0086754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	113	473	0	ENST00000328488.2:c.232G>A	p.Asp78Asn	p.D78N	ENST00000328488	NM_003533.2	78	Gac/Aac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440113	49440113	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	101	429	0	ENST00000301067.7:c.4513del	p.Val1505Ter	p.V1505*	ENST00000301067	NM_003482.3	1505	Gtg/tg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964326	70964326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	40	194	0	ENST00000276594.2:c.1702C>T	p.His568Tyr	p.H568Y	ENST00000276594	NM_024504.3	568	Cat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782177		P-0086834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			107	54	574	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																															
IRF4	3662	MSKCC	GRCh37	6	394890	394890	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1459743512		P-0086834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	47	523	2	ENST00000380956.4:c.286C>T	p.Arg96Cys	p.R96C	ENST00000380956	NM_001195286.1	96	Cgc/Tgc																																																																															
MYC	4609	MSKCC	GRCh37	8	128751251	128751251	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	48	477	0	ENST00000377970.2:c.788C>A	p.Thr263Asn	p.T263N	ENST00000377970	NM_002467.4	263	aCc/aAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438298	110438298	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	57	393	0	ENST00000375856.3:c.103G>T	p.Gly35Cys	p.G35C	ENST00000375856	NM_003749.2	35	Ggc/Tgc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370851	55370851	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	45	557	0	ENST00000297316.4:c.153C>G	p.Asn51Lys	p.N51K	ENST00000297316	NM_022454.3	51	aaC/aaG																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206652420	206652420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	118	557	0	ENST00000367120.3:c.1127G>T	p.Ser376Ile	p.S376I	ENST00000367120	NM_014002.3	376	aGc/aTc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39283894	39283895	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0086834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	66	314	0	ENST00000402219.2:c.458_459delinsTT	p.Arg153Leu	p.R153L	ENST00000402219	NM_005633.3	153	cGG/cTT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509836	106509836	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	30	526	0	ENST00000359195.3:c.1830G>T	p.Leu610Phe	p.L610F	ENST00000359195	NM_002649.2	610	ttG/ttT																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63760064	63760099	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TATATGCGATGAGTTTGGTGAGTCTTTTTTTTTTTT	TATATGCGATGAGTTTGGTGAGTCTTTTTTTTTTTT	-			P-0086834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	13	415	0	ENST00000279873.7:c.718_733+20del		p.X240_splice	ENST00000279873	NM_032199.2	240																																																																																
GATA3	2625	MSKCC	GRCh37	10	8115927	8115927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	82	537	1	ENST00000346208.3:c.1273C>T	p.Pro425Ser	p.P425S	ENST00000346208		425	Cca/Tca																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434359	121434359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	32	583	0	ENST00000257555.6:c.1123G>A	p.Gly375Ser	p.G375S	ENST00000257555		375	Ggc/Agc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95574295	95574295	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	22	396	0	ENST00000343455.3:c.2572C>G	p.Leu858Val	p.L858V	ENST00000343455	NM_177438.2	858	Ctt/Gtt																																																																															
APC	324	MSKCC	GRCh37	5	112164598	112164598	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0086834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	17	392	0	ENST00000257430.4:c.1672A>C	p.Asn558His	p.N558H	ENST00000257430	NM_000038.5	558	Aat/Cat																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0086853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	27	260	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0086853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	51	416	0	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204732740	204732741	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0086853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	46	387	0	ENST00000302823.3:c.81dup	p.Leu28SerfsTer32	p.L28Sfs*32	ENST00000302823	NM_005214.4	25	-/T																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123239529	123239529	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs201752803		P-0086853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	59	534	0	ENST00000358487.5:c.2308T>G	p.Leu770Val	p.L770V	ENST00000358487	NM_000141.4	770	Ttg/Gtg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610059	81610059	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121908872		P-0086853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	43	487	0	ENST00000298171.2:c.1657G>A	p.Ala553Thr	p.A553T	ENST00000298171	NM_000369.2	553	Gcc/Acc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030329	180030329	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142322370		P-0086853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	67	465	1	ENST00000261937.6:c.3955C>T	p.Arg1319Trp	p.R1319W	ENST00000261937	NM_182925.4	1319	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0086853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	32	260	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62322173	62322173	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A			P-0086853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	48	314	0	ENST00000482936.1:c.2429G>A	p.Gly810Glu	p.G810E	ENST00000482936		810	gGg/gAg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981757	201981777	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTCTTCCCAGACCAGGGCAG	CCTCTTCCCAGACCAGGGCAG	-			P-0086853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	63	439	0	ENST00000359651.3:c.479-9_490del		p.X160_splice	ENST00000359651		160																																																																																
SOX9	6662	MSKCC	GRCh37	17	70117625	70117625	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	89	462	0	ENST00000245479.2:c.95del	p.Gly32AlafsTer29	p.G32Afs*29	ENST00000245479	NM_000346.3	31	gcG/gc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0086854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	71	458	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
BTK	695	MSKCC	GRCh37	X	100612539	100612539	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0086854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	239	455	0	ENST00000308731.7:c.1135C>T	p.Gln379Ter	p.Q379*	ENST00000308731	NM_000061.2	379	Caa/Taa																																																																															
BTK	695	MSKCC	GRCh37	X	100613387	100613387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	247	541	0	ENST00000308731.7:c.1013C>T	p.Ser338Phe	p.S338F	ENST00000308731	NM_000061.2	338	tCc/tTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340444	8340444	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	74	551	0	ENST00000356435.5:c.5152C>A	p.Gln1718Lys	p.Q1718K	ENST00000356435		1718	Cag/Aag																																																																															
BTK	695	MSKCC	GRCh37	X	100613313	100613313	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0086854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	288	570	0	ENST00000308731.7:c.1087C>T	p.Gln363Ter	p.Q363*	ENST00000308731	NM_000061.2	363	Cag/Tag																																																																															
BTK	695	MSKCC	GRCh37	X	100612517	100612517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	259	468	0	ENST00000308731.7:c.1157C>T	p.Ser386Phe	p.S386F	ENST00000308731	NM_000061.2	386	tCc/tTc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066507	94066507	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	100	521	0	ENST00000369303.4:c.1252G>C	p.Val418Leu	p.V418L	ENST00000369303	NM_004440.3	418	Gta/Cta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0086855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	140	640	0	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986603	36986652	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCGCCAGGTCCGGAGACTGGCCTGCGCTGCCTGGCTGGTGGCCCGGGT	GTGCGCCAGGTCCGGAGACTGGCCTGCGCTGCCTGGCTGGTGGCCCGGGT	-			P-0086855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	67	532	0	ENST00000354822.5:c.1037_1086del	p.His346ProfsTer76	p.H346Pfs*76	ENST00000354822	NM_001079668.2	346	cACCCGGGCCACCAGCCAGGCAGCGCAGGCCAGTCTCCGGACCTGGCGCAC/c																																																																															
CDH1	999	MSKCC	GRCh37	16	68846135	68846135	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	138	459	0	ENST00000261769.5:c.1106A>G	p.Asn369Ser	p.N369S	ENST00000261769	NM_004360.3	369	aAc/aGc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68973010	68973010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	42	294	0	ENST00000288368.4:c.1335C>A	p.His445Gln	p.H445Q	ENST00000288368	NM_024870.2	445	caC/caA																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	115	308	0	ENST00000304494.5:c.238del	p.Arg80AspfsTer66	p.R80Dfs*66	ENST00000304494	NM_000077.4	80	Cga/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	98	258	0	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937076	36937076	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779227407		P-0086861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	109	328	0	ENST00000361632.4:c.1243G>A	p.Gly415Arg	p.G415R	ENST00000361632		415	Ggg/Agg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989619	212989619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	71	267	0	ENST00000342788.4:c.92G>T	p.Gly31Val	p.G31V	ENST00000342788	NM_005235.2	31	gGa/gTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151855979	151855979	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	69	336	0	ENST00000262189.6:c.11639C>G	p.Ser3880Cys	p.S3880C	ENST00000262189	NM_170606.2	3880	tCt/tGt																																																																															
TERT	7015	MSKCC	GRCh37	5	1294774	1294774	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	104	337	0	ENST00000310581.5:c.227G>C	p.Cys76Ser	p.C76S	ENST00000310581	NM_198253.2	76	tGc/tCc																																																																															
EP300	2033	MSKCC	GRCh37	22	41573885	41573886	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0086861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			947	120	355	0	ENST00000263253.7:c.6173_6174del	p.Leu2058GlnfsTer14	p.L2058Qfs*14	ENST00000263253	NM_001429.3	2057	aCT/a																																																																															
MTAP	4507	MSKCC	GRCh37	9	21818101	21818101	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	90	263	0	ENST00000380172.4:c.247G>C	p.Glu83Gln	p.E83Q	ENST00000380172	NM_002451.3	83	Gaa/Caa																																																																															
KLF5	688	MSKCC	GRCh37	13	73636642	73636642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			799	136	408	0	ENST00000377687.4:c.905C>T	p.Pro302Leu	p.P302L	ENST00000377687	NM_001730.3	302	cCg/cTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417525	139417525	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	235	373	0	ENST00000277541.6:c.519del	p.Thr174ProfsTer103	p.T174Pfs*103	ENST00000277541	NM_017617.3	173	ccC/cc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18466915	18466915	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	282	219	0	ENST00000266497.5:c.1054C>A	p.His352Asn	p.H352N	ENST00000266497		352	Cac/Aac																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249941	110249941	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	170	310	0	ENST00000374672.4:c.734C>G	p.Pro245Arg	p.P245R	ENST00000374672	NM_004235.4	245	cCg/cGg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340431	8340431	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	68	295	0	ENST00000356435.5:c.5165C>A	p.Ala1722Glu	p.A1722E	ENST00000356435		1722	gCa/gAa																																																																															
MET	4233	MSKCC	GRCh37	7	116339509	116339509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	102	314	0	ENST00000397752.3:c.371C>G	p.Thr124Ser	p.T124S	ENST00000397752	NM_000245.2	124	aCc/aGc																																																																															
INSR	3643	MSKCC	GRCh37	19	7119474	7119474	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	59	299	0	ENST00000302850.5:c.3780C>G	p.Asn1260Lys	p.N1260K	ENST00000302850	NM_000208.2	1260	aaC/aaG																																																																															
CD274	29126	MSKCC	GRCh37	9	5457279	5457295	+	protein_altering_variant	In_Frame_Del	DEL	GCCCGGCTGTTGAAGGA	GCCCGGCTGTTGAAGGA	CC			P-0086861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	80	332	1	ENST00000381577.3:c.253_269delinsCC	p.Ala85_Asp90delinsPro	p.A85_D90delinsP	ENST00000381577	NM_014143.3	85	GCCCGGCTGTTGAAGGAc/CCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0086866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	307	211	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39916489	39916489	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	151	126	0	ENST00000378444.4:c.4514del	p.Cys1505LeufsTer63	p.C1505Lfs*63	ENST00000378444	NM_001123385.1	1505	tGt/tt																																																																															
POLE	5426	MSKCC	GRCh37	12	133249857	133249857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	51	301	0	ENST00000320574.5:c.1366G>A	p.Ala456Thr	p.A456T	ENST00000320574	NM_006231.2	456	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0086872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	70	276	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0086872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	142	394	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0086872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	73	358	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446767	49446767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	55	416	1	ENST00000301067.7:c.1043G>A	p.Arg348His	p.R348H	ENST00000301067	NM_003482.3	348	cGc/cAc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46583909	46583909	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	57	316	0	ENST00000263734.3:c.416A>G	p.Asp139Gly	p.D139G	ENST00000263734	NM_001430.4	139	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0081060-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			195	406	545	1	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267360	198267360	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs374250186		P-0081060-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			510	164	517	0	ENST00000335508.6:c.1997A>C	p.Lys666Thr	p.K666T	ENST00000335508	NM_012433.2	666	aAg/aCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0081060-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			118	307	334	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420438	49420438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081060-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			195	615	597	1	ENST00000301067.7:c.15311G>A	p.Cys5104Tyr	p.C5104Y	ENST00000301067	NM_003482.3	5104	tGc/tAc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533914	63533914	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751229839		P-0085308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	42	509	0	ENST00000307078.5:c.1240C>T	p.Arg414Trp	p.R414W	ENST00000307078	NM_004655.3	414	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0085308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	155	499	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0085308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	58	303	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622183	1622183	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771354127		P-0085308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	87	582	0	ENST00000344749.5:c.692C>T	p.Pro231Leu	p.P231L	ENST00000344749	NM_001136139.2	231	cCg/cTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299078	15299078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	128	442	0	ENST00000263388.2:c.1460G>T	p.Arg487Leu	p.R487L	ENST00000263388	NM_000435.2	487	cGa/cTa																																																																															
SDHB	6390	MSKCC	GRCh37	1	17380475	17380475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086352-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			416	31	337	0	ENST00000375499.3:c.40C>T	p.Pro14Ser	p.P14S	ENST00000375499	NM_003000.2	14	Ccg/Tcg																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514089	69514089	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086352-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			489	84	437	0	ENST00000294312.3:c.592G>C	p.Asp198His	p.D198H	ENST00000294312	NM_005117.2	198	Gac/Cac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421699	49421699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086352-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			492	78	457	0	ENST00000301067.7:c.14530G>A	p.Gly4844Ser	p.G4844S	ENST00000301067	NM_003482.3	4844	Ggt/Agt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425631	49425631	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086352-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			477	72	529	0	ENST00000301067.7:c.12857del	p.Pro4286HisfsTer98	p.P4286Hfs*98	ENST00000301067	NM_003482.3	4286	cCa/ca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437664	49437664	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086352-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			587	35	506	0	ENST00000301067.7:c.5306del	p.Pro1769LeufsTer16	p.P1769Lfs*16	ENST00000301067	NM_003482.3	1769	cCt/ct																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30325698	30325698	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086352-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	86	275	0	ENST00000322652.5:c.1896G>T	p.Met632Ile	p.M632I	ENST00000322652	NM_015355.2	632	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0086352-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			406	81	453	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61325813	61325813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086352-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			124	14	98	0	ENST00000283752.5:c.403G>A	p.Asp135Asn	p.D135N	ENST00000283752	NM_006919.2	135	Gat/Aat																																																																															
KIT	3815	MSKCC	GRCh37	4	55594267	55594267	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086352-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			272	74	278	0	ENST00000288135.5:c.1970T>C	p.Leu657Pro	p.L657P	ENST00000288135	NM_000222.2	657	cTt/cCt																																																																															
BRAF	673	MSKCC	GRCh37	7	140476713	140476713	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0086352-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			313	51	257	0	ENST00000288602.6:c.1693G>C	p.Asp565His	p.D565H	ENST00000288602	NM_004333.4	565	Gat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380223	25380223	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086352-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			370	84	303	0	ENST00000256078.4:c.235C>G	p.Leu79Val	p.L79V	ENST00000256078	NM_033360.2	79	Ctt/Gtt																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872637	136872638	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0086352-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			659	43	482	0	ENST00000241393.3:c.860_861delinsAA	p.Thr287Lys	p.T287K	ENST00000241393	NM_003467.2	287	aCC/aAA																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007296	143007296	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0086639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	115	199	0	ENST00000262992.4:c.2487+1G>T		p.X829_splice	ENST00000262992	NM_001101669.1	829																																																																																
NTRK1	4914	MSKCC	GRCh37	1	156846223	156846223	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	132	323	1	ENST00000524377.1:c.1664A>G	p.Gln555Arg	p.Q555R	ENST00000524377	NM_002529.3	555	cAg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578351	7578369	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CTCCAGCCCCAGCTGCTCA	CTCCAGCCCCAGCTGCTCA	-			P-0086639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	185	370	0	ENST00000269305.4:c.559+2_559+20del		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
NF1	4763	MSKCC	GRCh37	17	29557277	29557277	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0086639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	83	244	0	ENST00000358273.4:c.2991-1G>C		p.X997_splice	ENST00000358273	NM_001042492.2	997																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139399278	139399279	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	A			P-0086639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	172	292	0	ENST00000277541.6:c.4864_4865delinsT	p.Arg1622SerfsTer27	p.R1622Sfs*27	ENST00000277541	NM_017617.3	1622	CGc/Tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578518	7578518	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs28934875		P-0086640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	426	341	0	ENST00000269305.4:c.412G>C	p.Ala138Pro	p.A138P	ENST00000269305	NM_001126112.2	138	Gcc/Ccc																																																																															
APC	324	MSKCC	GRCh37	5	112162945	112162945	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0086640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	191	210	0	ENST00000257430.4:c.1548+1G>A		p.X516_splice	ENST00000257430	NM_000038.5	516																																																																																
AR	367	MSKCC	GRCh37	X	66937325	66937325	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781301298		P-0086640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	277	294	0	ENST00000374690.3:c.2179C>T	p.Arg727Cys	p.R727C	ENST00000374690	NM_000044.3	727	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112178394	112178394	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	164	365	0	ENST00000257430.4:c.7103C>A	p.Ser2368Tyr	p.S2368Y	ENST00000257430	NM_000038.5	2368	tCt/tAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431684	49431684	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	197	424	1	ENST00000301067.7:c.9455T>C	p.Leu3152Pro	p.L3152P	ENST00000301067	NM_003482.3	3152	cTg/cCg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609951	81609951	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	222	400	0	ENST00000298171.2:c.1549C>A	p.Leu517Met	p.L517M	ENST00000298171	NM_000369.2	517	Ctg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0086641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	123	332	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0086641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	114	368	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0086641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	129	458	4	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523505	106523505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	96	299	3	ENST00000359195.3:c.2657C>T	p.Thr886Met	p.T886M	ENST00000359195	NM_002649.2	886	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0086641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	111	392	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473648	67473648	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223736		P-0086641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	120	373	0	ENST00000327367.4:c.728G>A	p.Arg243His	p.R243H	ENST00000327367	NM_005902.3	243	cGc/cAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912807	32912807	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80358666		P-0086641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	143	355	1	ENST00000380152.3:c.4315G>A	p.Ala1439Thr	p.A1439T	ENST00000380152		1439	Gcc/Acc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46211602	46211602	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766610841		P-0086641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	88	274	0	ENST00000334344.6:c.568G>A	p.Val190Ile	p.V190I	ENST00000334344	NM_152641.2	190	Gtc/Atc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374992	45374992	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0086641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	135	394	4	ENST00000262160.6:c.851A>C	p.Gln284Pro	p.Q284P	ENST00000262160	NM_005901.5	284	cAg/cCg																																																																															
CDH1	999	MSKCC	GRCh37	16	68842466	68842466	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	42	384	0	ENST00000261769.5:c.527T>C	p.Val176Ala	p.V176A	ENST00000261769	NM_004360.3	176	gTt/gCt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251918	153251921	+	frameshift_variant	Frame_Shift_Del	DEL	GTAT	GTAT	ATA			P-0086641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	114	337	2	ENST00000281708.4:c.1085_1088delinsTAT	p.Asp362ValfsTer15	p.D362Vfs*15	ENST00000281708	NM_033632.3	362	gATACt/gTATt																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423234	47423234	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	135	550	0	ENST00000404338.3:c.1302G>C	p.Arg434Ser	p.R434S	ENST00000404338	NM_004491.4	434	agG/agC																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870929	12870929	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086762-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	174	434	0	ENST00000228872.4:c.157del	p.Glu53LysfsTer18	p.E53Kfs*18	ENST00000228872	NM_004064.3	52	atG/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs878854073		P-0086762-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	100	348	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0086762-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	128	250	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207092	1207092	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs778376925		P-0068042-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			413	42	585	0	ENST00000326873.7:c.180C>A	p.Tyr60Ter	p.Y60*	ENST00000326873	NM_000455.4	60	taC/taA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0068042-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			324	35	369	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
WT1	7490	MSKCC	GRCh37	11	32449506	32449506	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068042-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			308	22	371	0	ENST00000332351.3:c.868A>C	p.Ser290Arg	p.S290R	ENST00000332351	NM_024426.4	290	Agc/Cgc																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792755	33792755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068042-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			316	18	306	0	ENST00000498907.2:c.566C>T	p.Pro189Leu	p.P189L	ENST00000498907	NM_004364.3	189	cCc/cTc																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197381	26197381	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068042-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			622	61	704	0	ENST00000356476.2:c.98C>A	p.Thr33Asn	p.T33N	ENST00000356476		33	aCc/aAc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434706	99434706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068042-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			441	24	532	0	ENST00000268035.6:c.793C>T	p.Pro265Ser	p.P265S	ENST00000268035	NM_000875.3	265	Ccg/Tcg																																																																															
ATM	472	MSKCC	GRCh37	11	108173692	108173692	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149569091		P-0084859-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			74	36	385	0	ENST00000278616.4:c.5432G>A	p.Cys1811Tyr	p.C1811Y	ENST00000278616	NM_000051.3	1811	tGt/tAt																																																																															
FYN	2534	MSKCC	GRCh37	6	112015596	112015596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084859-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	107	471	0	ENST00000368678.4:c.1246G>A	p.Glu416Lys	p.E416K	ENST00000368678		416	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398280	25398281	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0086223-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			178	179	264	0	ENST00000256078.4:c.38_39delinsTT	p.Gly13Val	p.G13V	ENST00000256078	NM_033360.2	13	gGC/gTT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821608	+	inframe_deletion	In_Frame_Del	DEL	GCCGCCGCCGCCGCC	GCCGCCGCCGCCGCC	-	rs1313671722		P-0086223-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			171	65	258	0	ENST00000268489.5:c.10567_10581del	p.Gly3523_Gly3527del	p.G3523_G3527del	ENST00000268489	NM_006885.3	3523	GGCGGCGGCGGCGGC/-																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600425	10600425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086223-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			165	310	418	0	ENST00000171111.5:c.1430del	p.Gly477AlafsTer23	p.G477Afs*23	ENST00000171111	NM_203500.1	477	gGc/gc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600432	10600432	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs547713274		P-0086223-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			149	324	420	0	ENST00000171111.5:c.1423G>T	p.Val475Leu	p.V475L	ENST00000171111	NM_203500.1	475	Gtg/Ttg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220622	1220622	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131690923		P-0086223-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			128	259	436	0	ENST00000326873.7:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000326873	NM_000455.4	214	Cag/Tag																																																																															
ETV1	2115	MSKCC	GRCh37	7	14017076	14017076	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1403337828		P-0086223-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	145	256	0	ENST00000405192.2:c.211G>T	p.Val71Leu	p.V71L	ENST00000405192	NM_001163147.1	71	Gta/Tta																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99192818	99192818	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086223-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			146	98	204	0	ENST00000268035.6:c.8C>G	p.Ser3Cys	p.S3C	ENST00000268035	NM_000875.3	3	tCt/tGt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12044572	12044572	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086223-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			183	117	345	0	ENST00000353533.5:c.1195del	p.Asp399IlefsTer14	p.D399Ifs*14	ENST00000353533	NM_003010.3	399	Gat/at																																																																															
NF1	4763	MSKCC	GRCh37	17	29546113	29546113	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0086223-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	241	354	0	ENST00000358273.4:c.1618G>T	p.Glu540Ter	p.E540*	ENST00000358273	NM_001042492.2	540	Gag/Tag																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46267933	46267934	+	stop_gained	Nonsense_Mutation	DNP	TG	TG	AT			P-0086223-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			217	217	360	0	ENST00000371998.3:c.2694_2695delinsAT	p.Tyr898_Gly899delinsTer	p.Y898_G899delins*	ENST00000371998		898	taTGgc/taATgc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956820	68956820	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086223-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			385	91	265	0	ENST00000288368.4:c.938G>T	p.Gly313Val	p.G313V	ENST00000288368	NM_024870.2	313	gGc/gTc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913836	32913836	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs80358757		P-0086225-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	216	491	0	ENST00000380152.3:c.5344C>G	p.Gln1782Glu	p.Q1782E	ENST00000380152		1782	Caa/Gaa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981202	201981202	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086225-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			657	492	639	0	ENST00000359651.3:c.281G>C	p.Arg94Pro	p.R94P	ENST00000359651		94	cGa/cCa																																																																															
ATR	545	MSKCC	GRCh37	3	142222253	142222253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086225-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			749	200	408	0	ENST00000350721.4:c.5239G>T	p.Gly1747Cys	p.G1747C	ENST00000350721	NM_001184.3	1747	Ggt/Tgt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949134	71949134	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0086225-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			201	1922	723	0	ENST00000298229.2:c.3601A>T	p.Met1201Leu	p.M1201L	ENST00000298229	NM_001567.3	1201	Atg/Ttg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396258	139396258	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086225-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			493	218	694	1	ENST00000277541.6:c.5580del	p.Thr1861HisfsTer26	p.T1861Hfs*26	ENST00000277541	NM_017617.3	1860	ccC/cc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597368	10597368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086225-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			325	369	528	0	ENST00000171111.5:c.1835C>T	p.Pro612Leu	p.P612L	ENST00000171111	NM_203500.1	612	cCc/cTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602495	10602495	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086225-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			648	233	667	0	ENST00000171111.5:c.1083del	p.Arg362GlyfsTer38	p.R362Gfs*38	ENST00000171111	NM_203500.1	361	ccG/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577083	7577092	+	protein_altering_variant	In_Frame_Del	DEL	CTCTGTGCGC	CTCTGTGCGC	G			P-0086225-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			182	436	620	0	ENST00000269305.4:c.846_855delinsC	p.Arg283_Glu285del	p.R283_E285del	ENST00000269305	NM_001126112.2	282	cgGCGCACAGAG/cgC																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197072	26197072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086225-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			185	523	623	0	ENST00000356476.2:c.407C>T	p.Ala136Val	p.A136V	ENST00000356476		136	gCg/gTg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12660135	12660135	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086225-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			137	274	512	0	ENST00000251849.4:c.86C>G	p.Ser29Cys	p.S29C	ENST00000251849	NM_002880.3	29	tCt/tGt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18491366	18491366	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086225-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			451	186	362	0	ENST00000266497.5:c.1279G>T	p.Val427Leu	p.V427L	ENST00000266497		427	Gtg/Ttg																																																																															
POT1	25913	MSKCC	GRCh37	7	124503607	124503607	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086225-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			131	216	542	0	ENST00000357628.3:c.343A>G	p.Ile115Val	p.I115V	ENST00000357628	NM_015450.2	115	Ata/Gta																																																																															
AR	367	MSKCC	GRCh37	X	66765349	66765349	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086225-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			238	232	334	0	ENST00000374690.3:c.361T>A	p.Ser121Thr	p.S121T	ENST00000374690	NM_000044.3	121	Tcg/Acg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974683	21974684	+	missense_variant	Missense_Mutation	DNP	CG	CG	AT			P-0086225-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			200	201	582	1	ENST00000304494.5:c.143_144delinsAT	p.Pro48His	p.P48H	ENST00000304494	NM_000077.4	48	cCG/cAT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435049	49435049	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086225-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			338	366	654	0	ENST00000301067.7:c.6504del	p.Ala2169ProfsTer95	p.A2169Pfs*95	ENST00000301067	NM_003482.3	2168	ccC/cc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225449701	225449701	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086225-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			213	192	298	0	ENST00000264414.4:c.26del	p.Gly9AlafsTer15	p.G9Afs*15	ENST00000264414	NM_003590.4	9	gGc/gc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155273	55155273	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086225-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			296	191	587	0	ENST00000257290.5:c.2872T>C	p.Tyr958His	p.Y958H	ENST00000257290	NM_006206.4	958	Tat/Cat																																																																															
ERF	2077	MSKCC	GRCh37	19	42753548	42753548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086225-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			505	247	754	0	ENST00000222329.4:c.716G>T	p.Arg239Leu	p.R239L	ENST00000222329	NM_006494.2	239	cGg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0086535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	43	330	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0086535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	176	609	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0086535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	48	445	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0086537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	74	433	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562973	176562973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	85	372	0	ENST00000439151.2:c.869G>A	p.Gly290Glu	p.G290E	ENST00000439151	NM_022455.4	290	gGa/gAa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589632	67589634	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0086537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	53	264	0	ENST00000274335.5:c.1397_1399del	p.Leu466del	p.L466del	ENST00000274335		465	agATTa/aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577518	7577524	+	frameshift_variant	Frame_Shift_Del	DEL	TGATGGT	TGATGGT	GG			P-0086537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	15	391	1	ENST00000269305.4:c.757_763delinsCC	p.Thr253ProfsTer9	p.T253Pfs*9	ENST00000269305	NM_001126112.2	253	ACCATCAtc/CCtc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0086538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	239	402	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029437	16029439	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-	rs774778469		P-0086538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	42	415	0	ENST00000268712.3:c.1591_1593del	p.Glu531del	p.E531del	ENST00000268712	NM_006311.3	531	GAA/-																																																																															
AXL	558	MSKCC	GRCh37	19	41727073	41727073	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs949895144		P-0086538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	81	359	0	ENST00000301178.4:c.331G>A	p.Asp111Asn	p.D111N	ENST00000301178	NM_021913.4	111	Gac/Aac																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953355	17953355	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs56269787		P-0086538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	66	454	1	ENST00000458235.1:c.631A>G	p.Arg211Gly	p.R211G	ENST00000458235	NM_000215.3	211	Agg/Ggg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976457	18976457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1337899219		P-0086538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	81	503	0	ENST00000262803.5:c.3107C>T	p.Pro1036Leu	p.P1036L	ENST00000262803	NM_002911.3	1036	cCc/cTc																																																																															
RAD51	5888	MSKCC	GRCh37	15	41021753	41021753	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	72	368	0	ENST00000267868.3:c.695A>G	p.Tyr232Cys	p.Y232C	ENST00000267868	NM_002875.4	232	tAc/tGc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115272940	115272940	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	105	398	0	ENST00000438362.2:c.1433T>C	p.Val478Ala	p.V478A	ENST00000438362	NM_001242891.1	478	gTa/gCa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046473	69046473	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	150	354	0	ENST00000288368.4:c.3946G>T	p.Val1316Phe	p.V1316F	ENST00000288368	NM_024870.2	1316	Gtt/Ttt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292549	15292549	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	49	429	0	ENST00000263388.2:c.2630C>A	p.Pro877His	p.P877H	ENST00000263388	NM_000435.2	877	cCt/cAt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701844	43701844	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0086538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	57	310	0	ENST00000382044.4:c.5400+1G>A		p.X1800_splice	ENST00000382044	NM_001141980.1	1800																																																																																
PMS1	5378	MSKCC	GRCh37	2	190717393	190717393	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	81	370	0	ENST00000441310.2:c.713del	p.Gly238AspfsTer25	p.G238Dfs*25	ENST00000441310	NM_000534.4	238	Gga/ga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743943	40743943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs763964405		P-0086542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	27	310	0	ENST00000373198.4:c.3052C>T	p.Arg1018Ter	p.R1018*	ENST00000373198	NM_133170.3	1018	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0086542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	60	434	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118931	70118948	+	inframe_deletion	In_Frame_Del	DEL	ACCACCCGGATTACAAGT	ACCACCCGGATTACAAGT	-			P-0086542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	37	479	0	ENST00000245479.2:c.507_524del	p.His169_Tyr174del	p.H169_Y174del	ENST00000245479	NM_000346.3	168	gACCACCCGGATTACAAGTac/gac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0086542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	34	325	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986645	36986646	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0086542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	42	340	0	ENST00000354822.5:c.1043dup	p.His349ProfsTer90	p.H349Pfs*90	ENST00000354822	NM_001079668.2	348	ggc/ggGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0086544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	32	241	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2B-AS1	100048912	MSKCC	GRCh37	9	21994161	21994161	+	upstream_gene_variant	5'Flank	SNP	T	T	C			P-0086544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	51	385	0				ENST00000428597																																																																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52715980	52715980	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	64	453	0	ENST00000322088.6:c.545G>T	p.Arg182Leu	p.R182L	ENST00000322088	NM_014225.5	182	cGg/cTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628332	187628332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	77	452	0	ENST00000441802.2:c.2650G>T	p.Asp884Tyr	p.D884Y	ENST00000441802	NM_005245.3	884	Gat/Tat																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411263	63411263	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	78	455	0	ENST00000330258.3:c.1904G>T	p.Cys635Phe	p.C635F	ENST00000330258	NM_152424.3	635	tGt/tTt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143129590	143129590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	17	222	0	ENST00000262992.4:c.1060C>T	p.Pro354Ser	p.P354S	ENST00000262992	NM_001101669.1	354	Cct/Tct																																																																															
RARA	5914	MSKCC	GRCh37	17	38512375	38512375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	30	246	0	ENST00000254066.5:c.1286G>T	p.Gly429Val	p.G429V	ENST00000254066	NM_000964.3	429	gGt/gTt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177612	56177612	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0086544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	81	432	0	ENST00000399503.3:c.2585A>T	p.Glu862Val	p.E862V	ENST00000399503	NM_005921.1	862	gAg/gTg																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230492839	230492839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	124	428	0	ENST00000525115.1:c.353G>T	p.Ser118Ile	p.S118I	ENST00000525115		118	aGc/aTc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1327755	1327755	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	47	286	0	ENST00000381566.1:c.126del	p.Gln43ArgfsTer2	p.Q43Rfs*2	ENST00000381566		42	gtG/gt																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61306950	61306950	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0086544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	74	398	0	ENST00000341074.5:c.530T>G	p.Val177Gly	p.V177G	ENST00000341074	NM_002974.2	177	gTg/gGg																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1331461	1331461	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	70	367	0	ENST00000381566.1:c.67C>A	p.Gln23Lys	p.Q23K	ENST00000381566		23	Caa/Aaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0086548-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	55	508	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579407	7579407	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0086548-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	80	619	0	ENST00000269305.4:c.280del	p.Ser94HisfsTer29	p.S94Hfs*29	ENST00000269305	NM_001126112.2	94	Tca/ca																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106046	8106047	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0086548-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	53	551	0	ENST00000346208.3:c.866_867delinsAA	p.Leu289Gln	p.L289Q	ENST00000346208		289	cTC/cAA																																																																															
ATM	472	MSKCC	GRCh37	11	108168013	108168013	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0086548-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	62	278	0	ENST00000278616.4:c.4910-1G>C		p.X1637_splice	ENST00000278616	NM_000051.3	1637																																																																																
BCL2L11	10018	MSKCC	GRCh37	2	111881453	111881453	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086548-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	41	495	0	ENST00000393256.3:c.131C>A	p.Pro44His	p.P44H	ENST00000393256	NM_006538.4	44	cCt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0086673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	48	504	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0086673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	58	266	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781894		P-0086673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	82	537	0	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47129662	47129662	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057523157		P-0086673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	94	455	0	ENST00000409792.3:c.5218C>T	p.Arg1740Trp	p.R1740W	ENST00000409792	NM_014159.6	1740	Cgg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244109	5244109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	95	545	1	ENST00000357368.4:c.1373G>A	p.Arg458His	p.R458H	ENST00000357368	NM_002850.3	458	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108173625	108173626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGATGATATAAATCTG			P-0086673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	39	437	0	ENST00000278616.4:c.5371_5387dup	p.Ile1796MetfsTer3	p.I1796Mfs*3	ENST00000278616	NM_000051.3	1789	ctg/cTGGATGATATAAATCTGtg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117687377	117687378	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	TA	TA	-			P-0086673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	57	440	0	ENST00000368508.3:c.2673_2674del	p.Tyr891Ter	p.Y891*	ENST00000368508	NM_002944.2	891	taTAgt/tagt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637802	176637802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	41	458	0	ENST00000439151.2:c.2402C>A	p.Ala801Glu	p.A801E	ENST00000439151	NM_022455.4	801	gCa/gAa																																																																															
USP8	9101	MSKCC	GRCh37	15	50782658	50782658	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0086673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	99	522	0	ENST00000307179.4:c.2170C>T	p.Gln724Ter	p.Q724*	ENST00000307179		724	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0086674-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	271	450	4	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0086674-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			78	328	516	1	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913385		P-0086674-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			71	275	472	3	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144848	11144848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086674-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	240	405	3	ENST00000344626.4:c.3923G>A	p.Arg1308Gln	p.R1308Q	ENST00000344626	NM_003072.3	1308	cGg/cAg																																																																															
MET	4233	MSKCC	GRCh37	7	116411956	116411956	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086674-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	390	564	1	ENST00000397752.3:c.2941G>C	p.Asp981His	p.D981H	ENST00000397752	NM_000245.2	981	Gat/Cat																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047884	180047884	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086674-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	20	521	0	ENST00000261937.6:c.2291C>A	p.Ala764Asp	p.A764D	ENST00000261937	NM_182925.4	764	gCc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs786203436		P-0086677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	146	584	0	ENST00000269305.4:c.487T>A	p.Tyr163Asn	p.Y163N	ENST00000269305	NM_001126112.2	163	Tac/Aac																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9776099	9776099	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748146002		P-0086677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	44	450	0	ENST00000377346.4:c.563G>A	p.Arg188Gln	p.R188Q	ENST00000377346	NM_005026.3	188	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175770	112175770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	210	533	0	ENST00000257430.4:c.4480del	p.Glu1494LysfsTer13	p.E1494Kfs*13	ENST00000257430	NM_000038.5	1493	acG/ac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1422891742		P-0086677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	45	410	0	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0086677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	109	396	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628367	187628367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	166	575	0	ENST00000441802.2:c.2615G>A	p.Ser872Asn	p.S872N	ENST00000441802	NM_005245.3	872	aGc/aAc																																																																															
PAX5	5079	MSKCC	GRCh37	9	37002653	37002653	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	108	423	0	ENST00000358127.4:c.596G>C	p.Arg199Thr	p.R199T	ENST00000358127	NM_001280556.1	199	aGa/aCa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910831	114910831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	56	473	0	ENST00000543371.1:c.950C>T	p.Pro317Leu	p.P317L	ENST00000543371	NM_001198531.1	317	cCa/cTa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593405	48593406	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0086677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	15	336	0	ENST00000342988.3:c.1156_1157delinsCT	p.Gly386Leu	p.G386L	ENST00000342988	NM_005359.5	386	GGt/CTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0086686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			61	48	265	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0086686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	273	596	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89355004	89355004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	152	579	0	ENST00000301030.4:c.676G>A	p.Glu226Lys	p.E226K	ENST00000301030	NM_001256183.1	226	Gag/Aag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18715785	18715785	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	83	432	0	ENST00000266497.5:c.3616G>C	p.Glu1206Gln	p.E1206Q	ENST00000266497		1206	Gaa/Caa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223431	53223431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	92	507	0	ENST00000375401.3:c.3928G>A	p.Glu1310Lys	p.E1310K	ENST00000375401	NM_004187.3	1310	Gag/Aag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222819	53222819	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0086686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	132	539	0	ENST00000375401.3:c.4118-1G>C		p.X1373_splice	ENST00000375401	NM_004187.3	1373																																																																																
IKZF1	10320	MSKCC	GRCh37	7	50468008	50468008	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	154	624	0	ENST00000331340.3:c.1243A>G	p.Thr415Ala	p.T415A	ENST00000331340	NM_006060.4	415	Acc/Gcc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436317	110436317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	138	646	0	ENST00000375856.3:c.2084C>T	p.Ala695Val	p.A695V	ENST00000375856	NM_003749.2	695	gCc/gTc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39741421	39741421	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0086686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1198	84	455	0	ENST00000361337.2:c.1309-1G>T		p.X437_splice	ENST00000361337	NM_003286.2	437																																																																																
RAD52	5893	MSKCC	GRCh37	12	1039024	1039024	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1339285918		P-0086686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	51	488	0	ENST00000358495.3:c.309C>G	p.Phe103Leu	p.F103L	ENST00000358495	NM_134424.2	103	ttC/ttG																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637744	52637744	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	12	354	0	ENST00000394830.3:c.2572G>C	p.Asp858His	p.D858H	ENST00000394830	NM_018313.4	858	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0086688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	157	542	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425038	49425038	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs587783690		P-0086688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	83	419	0	ENST00000301067.7:c.13450C>T	p.Arg4484Ter	p.R4484*	ENST00000301067	NM_003482.3	4484	Cga/Tga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039904	47039904	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0086688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	88	163	0	ENST00000329236.7:c.1013A>G	p.Gln338Arg	p.Q338R	ENST00000329236	NM_001204466.1	338	cAg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0086688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	112	244	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591802	48591805	+	frameshift_variant	Frame_Shift_Del	DEL	ATTG	ATTG	-			P-0086688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	79	397	0	ENST00000342988.3:c.965_968del	p.Tyr322CysfsTer13	p.Y322Cfs*13	ENST00000342988	NM_005359.5	322	tATTGg/tg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971202	21971202	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	270	377	0	ENST00000304494.5:c.156del	p.Met52IlefsTer2	p.M52Ifs*2	ENST00000304494	NM_000077.4	52	atG/at																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44913096	44913097	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0086688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	69	128	0	ENST00000377967.4:c.772dup	p.Leu258ProfsTer5	p.L258Pfs*5	ENST00000377967	NM_021140.2	257	-/C																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0086690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	55	214	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0086690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	95	545	0	ENST00000275493.2:c.2303_2311dup	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857259	9857259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	115	600	0	ENST00000330684.3:c.4142G>A	p.Arg1381Lys	p.R1381K	ENST00000330684	NM_001134407.1	1381	aGa/aAa																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137528202	137528202	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	75	337	0	ENST00000367739.4:c.98C>G	p.Thr33Ser	p.T33S	ENST00000367739	NM_000416.2	33	aCt/aGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249140	55249140	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	129	528	0	ENST00000275493.2:c.2438A>G	p.Tyr813Cys	p.Y813C	ENST00000275493	NM_005228.3	813	tAc/tGc																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152861557	152861557	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0086690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	221	492	0	ENST00000406277.2:c.195T>G	p.Tyr65Ter	p.Y65*	ENST00000406277	NM_152274.4	65	taT/taG																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156738	20156738	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs868028391		P-0086691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	73	170	0	ENST00000379607.5:c.19A>G	p.Lys7Glu	p.K7E	ENST00000379607	NM_001412.3	7	Aaa/Gaa																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430237	181430237	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	95	420	0	ENST00000325404.1:c.89C>G	p.Ala30Gly	p.A30G	ENST00000325404	NM_003106.3	30	gCc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	141	518	0	ENST00000269305.4:c.503A>T	p.His168Leu	p.H168L	ENST00000269305	NM_001126112.2	168	cAc/cTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593558	48593558	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs587781618		P-0086699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	72	272	0	ENST00000342988.3:c.1308+1G>T		p.X436_splice	ENST00000342988	NM_005359.5	436																																																																																
RUNX1	861	MSKCC	GRCh37	21	36164724	36164724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	111	606	0	ENST00000300305.3:c.1151C>T	p.Pro384Leu	p.P384L	ENST00000300305		384	cCc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0086699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	85	303	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971191	21971191	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	99	465	0	ENST00000304494.5:c.167del	p.Ser56ThrfsTer90	p.S56Tfs*90	ENST00000304494	NM_000077.4	56	aGc/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0086700-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	221	279	3	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0086700-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	264	458	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604674	48604674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086700-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	137	432	0	ENST00000342988.3:c.1496G>A	p.Cys499Tyr	p.C499Y	ENST00000342988	NM_005359.5	499	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0086700-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	289	479	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047966	180047966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086700-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	99	605	0	ENST00000261937.6:c.2209C>T	p.Arg737Cys	p.R737C	ENST00000261937	NM_182925.4	737	Cgc/Tgc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177879	56177879	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0086700-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	156	553	0	ENST00000399503.3:c.2853del	p.Gln951HisfsTer17	p.Q951Hfs*17	ENST00000399503	NM_005921.1	951	cAa/ca																																																																															
TSC2	7249	MSKCC	GRCh37	16	2111891	2111891	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0086775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	249	721	0	ENST00000219476.3:c.1139del	p.Leu380ProfsTer9	p.L380Pfs*9	ENST00000219476	NM_000548.3	380	cTc/cc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33286581	33286581	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0086775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	221	470	0	ENST00000374542.5:c.2164-2A>G		p.X722_splice	ENST00000374542	NM_001141970.1	722																																																																																
TP53	7157	MSKCC	GRCh37	17	7579317	7579317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			70	534	611	0	ENST00000269305.4:c.370del	p.Cys124AlafsTer46	p.C124Afs*46	ENST00000269305	NM_001126112.2	124	Tgc/gc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25497937	25497937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	577	442	0	ENST00000264709.3:c.512G>A	p.Arg171Gln	p.R171Q	ENST00000264709	NM_175629.2	171	cGg/cAg																																																																															
MSI2	124540	MSKCC	GRCh37	17	55478782	55478782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			318	269	475	0	ENST00000284073.2:c.355G>T	p.Ala119Ser	p.A119S	ENST00000284073	NM_138962.2	119	Gcg/Tcg																																																																															
BCL6	604	MSKCC	GRCh37	3	187447369	187447369	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1820	541	643	0	ENST00000232014.4:c.824A>G	p.Tyr275Cys	p.Y275C	ENST00000232014	NM_001130845.1	275	tAc/tGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0047581-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			434	347	323	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047581-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			457	65	320	0	ENST00000269305.4:c.314del	p.Gly105AlafsTer18	p.G105Afs*18	ENST00000269305	NM_001126112.2	105	gGc/gc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	359972	359972	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0047581-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			358	34	246	1	ENST00000262320.3:c.1116+1G>A		p.X372_splice	ENST00000262320	NM_003502.3	372																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27092748	27092764	+	frameshift_variant	Frame_Shift_Del	DEL	GATGGGAACTGGACCTC	GATGGGAACTGGACCTC	-			P-0047581-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			341	76	257	0	ENST00000324856.7:c.2769_2785del	p.Met923IlefsTer7	p.M923Ifs*7	ENST00000324856	NM_006015.4	923	atGATGGGAACTGGACCTCct/atct																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94224103	94224103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047581-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			168	40	281	0	ENST00000323929.3:c.49G>T	p.Val17Phe	p.V17F	ENST00000323929	NM_005591.3	17	Gtt/Ttt																																																																															
GAB2	9846	MSKCC	GRCh37	11	77934685	77934685	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047581-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			444	35	344	0	ENST00000361507.4:c.1340A>G	p.Asn447Ser	p.N447S	ENST00000361507	NM_080491.2	447	aAt/aGt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228197	53228198	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0047581-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			223	46	207	0	ENST00000375401.3:c.2204_2205del	p.Asn735ArgfsTer8	p.N735Rfs*8	ENST00000375401	NM_004187.3	735	aAT/a																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460369	149460369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047581-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			444	45	373	0	ENST00000286301.3:c.268C>T	p.Pro90Ser	p.P90S	ENST00000286301	NM_005211.3	90	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0086776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	191	453	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
RET	5979	MSKCC	GRCh37	10	43596002	43596002	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876658284		P-0086776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	23	486	2	ENST00000355710.3:c.169C>T	p.Arg57Trp	p.R57W	ENST00000355710	NM_020975.4	57	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913273		P-0086776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	36	245	0	ENST00000263967.3:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000263967	NM_006218.2	542	Gaa/Caa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385182	41385182	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367872006		P-0086776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	51	479	0	ENST00000373198.4:c.779G>A	p.Arg260Gln	p.R260Q	ENST00000373198	NM_133170.3	260	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112173263	112173263	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0086776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	46	425	0	ENST00000257430.4:c.1972G>T	p.Glu658Ter	p.E658*	ENST00000257430	NM_000038.5	658	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0086776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	100	336	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175211	112175211	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	AA			P-0086776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	60	494	2	ENST00000257430.4:c.3920delinsAA	p.Ile1307LysfsTer8	p.I1307Kfs*8	ENST00000257430	NM_000038.5	1307	aTa/aAAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245494	153245494	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0086776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	137	484	0	ENST00000281708.4:c.1697G>A	p.Trp566Ter	p.W566*	ENST00000281708	NM_033632.3	566	tGg/tAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822257	72822257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	18	700	0	ENST00000268489.5:c.9918G>T	p.Gln3306His	p.Q3306H	ENST00000268489	NM_006885.3	3306	caG/caT																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900818	3900818	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149092707		P-0086776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	116	564	0	ENST00000262367.5:c.278G>A	p.Ser93Asn	p.S93N	ENST00000262367	NM_004380.2	93	aGc/aAc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898849	63898849	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0086776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	126	453	0	ENST00000295900.6:c.342A>T	p.Glu114Asp	p.E114D	ENST00000295900	NM_000333.3	114	gaA/gaT																																																																															
KLF5	688	MSKCC	GRCh37	13	73633468	73633468	+	start_lost	Translation_Start_Site	SNP	G	G	C			P-0086776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	143	363	0	ENST00000377687.4:c.3G>C	p.Met1?	p.M1?	ENST00000377687	NM_001730.3	1	atG/atC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0086777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	98	548	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654637	67654637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	292	558	0	ENST00000264010.4:c.1124G>T	p.Gly375Val	p.G375V	ENST00000264010	NM_006565.3	375	gGa/gTa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984671	11984674	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGAG	AGAG	-			P-0086777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	28	396	0	ENST00000353533.5:c.222_225del		p.X74_splice	ENST00000353533	NM_003010.3	74																																																																																
FLT1	2321	MSKCC	GRCh37	13	28886164	28886164	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	11	448	0	ENST00000282397.4:c.3458A>T	p.Lys1153Ile	p.K1153I	ENST00000282397	NM_002019.4	1153	aAa/aTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426526	49426526	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0072536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	98	533	0	ENST00000301067.7:c.11962C>T	p.Gln3988Ter	p.Q3988*	ENST00000301067	NM_003482.3	3988	Cag/Tag																																																																															
KIT	3815	MSKCC	GRCh37	4	55589864	55589864	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0072536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	18	290	0	ENST00000288135.5:c.1346G>T	p.Arg449Ile	p.R449I	ENST00000288135	NM_000222.2	449	aGa/aTa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031876	10031876	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	20	491	0	ENST00000330684.3:c.947C>A	p.Ala316Asp	p.A316D	ENST00000330684	NM_001134407.1	316	gCc/gAc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57474004	57474066	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGAGGACCCGCAGGCTGCAAGGAGCAACAGCGATGGGTAGGCACATTCAAAACCAGAAAAAA	AAGAGGACCCGCAGGCTGCAAGGAGCAACAGCGATGGGTAGGCACATTCAAAACCAGAAAAAA	GGT			P-0072536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	42	346	2	ENST00000371085.3:c.221_257+26delinsGGT		p.X74_splice	ENST00000371085	NM_000516.4	74																																																																																
TP53	7157	MSKCC	GRCh37	17	7577029	7577054	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCCCTGGGGGCAGCTCGTGGTGAG	GCTCCCTGGGGGCAGCTCGTGGTGAG	-			P-0074346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	329	676	0	ENST00000269305.4:c.884_909del	p.Pro295HisfsTer2	p.P295Hfs*2	ENST00000269305	NM_001126112.2	295	cCTCACCACGAGCTGCCCCCAGGGAGC/c																																																																															
PREX2	80243	MSKCC	GRCh37	8	68995527	68995527	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0074346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	56	344	0	ENST00000288368.4:c.1931T>G	p.Val644Gly	p.V644G	ENST00000288368	NM_024870.2	644	gTt/gGt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115282399	115282399	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	78	378	0	ENST00000438362.2:c.251G>T	p.Gly84Val	p.G84V	ENST00000438362	NM_001242891.1	84	gGa/gTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630090	187630090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	77	680	0	ENST00000441802.2:c.892G>C	p.Asp298His	p.D298H	ENST00000441802	NM_005245.3	298	Gac/Cac																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647460	23647460	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	143	417	0	ENST00000261584.4:c.407G>C	p.Ser136Thr	p.S136T	ENST00000261584	NM_024675.3	136	aGt/aCt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118354982	118354982	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0074346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	53	447	0	ENST00000534358.1:c.4171C>T	p.Gln1391Ter	p.Q1391*	ENST00000534358	NM_005933.3	1391	Caa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0086565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	82	371	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0086565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	94	253	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0086565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	177	441	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31376745	31376745	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0086565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	29	462	0	ENST00000328111.2:c.740A>T	p.Lys247Met	p.K247M	ENST00000328111	NM_006892.3	247	aAg/aTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0086587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	115	386	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
REL	5966	MSKCC	GRCh37	2	61147532	61147532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs543671237		P-0086587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	31	217	0	ENST00000295025.8:c.937C>T	p.Arg313Cys	p.R313C	ENST00000295025	NM_002908.2	313	Cgc/Tgc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115701	8115701	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0086587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	48	357	0	ENST00000346208.3:c.1048-1G>A		p.X350_splice	ENST00000346208		350																																																																																
UPF1	5976	MSKCC	GRCh37	19	18976101	18976101	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755841787		P-0086587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	143	528	0	ENST00000262803.5:c.2861G>A	p.Arg954Gln	p.R954Q	ENST00000262803	NM_002911.3	954	cGg/cAg																																																																															
SESN1	27244	MSKCC	GRCh37	6	109309846	109309846	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	118	310	0	ENST00000436639.2:c.1469G>T	p.Arg490Leu	p.R490L	ENST00000436639	NM_014454.2	490	cGt/cTt																																																																															
MED12	9968	MSKCC	GRCh37	X	70339981	70339981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	97	421	0	ENST00000374080.3:c.514G>C	p.Glu172Gln	p.E172Q	ENST00000374080		172	Gag/Cag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540254	187540254	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0086587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	68	464	0	ENST00000441802.2:c.7486G>T	p.Glu2496Ter	p.E2496*	ENST00000441802	NM_005245.3	2496	Gaa/Taa																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652557	48652557	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	54	489	0	ENST00000376670.3:c.1228C>G	p.Pro410Ala	p.P410A	ENST00000376670	NM_002049.3	410	Ccg/Gcg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28896927	28896927	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0086587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	40	317	0	ENST00000282397.4:c.2953G>A	p.Asp985Asn	p.D985N	ENST00000282397	NM_002019.4	985	Gat/Aat																																																																															
PGR	5241	MSKCC	GRCh37	11	100920711	100920711	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	90	335	0	ENST00000325455.5:c.2437G>C	p.Val813Leu	p.V813L	ENST00000325455	NM_001202474.3	813	Gtt/Ctt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425122	49425122	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0086587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	145	586	0	ENST00000301067.7:c.13366T>A	p.Ser4456Thr	p.S4456T	ENST00000301067	NM_003482.3	4456	Tca/Aca																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185198204	185198204	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	67	482	0	ENST00000265026.3:c.2686C>G	p.Pro896Ala	p.P896A	ENST00000265026	NM_004721.4	896	Ccc/Gcc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67662403	67662407	+	frameshift_variant	Frame_Shift_Del	DEL	TCGTC	TCGTC	-			P-0086587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	149	531	0	ENST00000264010.4:c.1649_1653del	p.Phe550SerfsTer8	p.F550Sfs*8	ENST00000264010	NM_006565.3	550	tTCGTC/t																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898321	63898321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	79	254	0	ENST00000295900.6:c.47C>T	p.Ala16Val	p.A16V	ENST00000295900	NM_000333.3	16	gCg/gTg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621006	1621006	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	61	664	0	ENST00000344749.5:c.1054A>G	p.Ser352Gly	p.S352G	ENST00000344749	NM_001136139.2	352	Agc/Ggc																																																																															
NF1	4763	MSKCC	GRCh37	17	29657477	29657477	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs137854565		P-0086587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	65	376	0	ENST00000358273.4:c.5773G>T	p.Glu1925Ter	p.E1925*	ENST00000358273	NM_001042492.2	1925	Gaa/Taa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044990	47044990	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	156	573	0	ENST00000329236.7:c.2082G>C	p.Glu694Asp	p.E694D	ENST00000329236	NM_001204466.1	694	gaG/gaC																																																																															
GAB2	9846	MSKCC	GRCh37	11	77938026	77938026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	112	462	0	ENST00000361507.4:c.692C>T	p.Ala231Val	p.A231V	ENST00000361507	NM_080491.2	231	gCc/gTc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112915461	112915461	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	58	308	0	ENST00000351677.2:c.860A>G	p.His287Arg	p.H287R	ENST00000351677	NM_002834.3	287	cAt/cGt																																																																															
BLM	641	MSKCC	GRCh37	15	91293136	91293136	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	143	480	0	ENST00000355112.3:c.638C>G	p.Ser213Cys	p.S213C	ENST00000355112	NM_000057.2	213	tCt/tGt																																																																															
SDHB	6390	MSKCC	GRCh37	1	17371319	17371319	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772551056		P-0086592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	81	304	0	ENST00000375499.3:c.137G>A	p.Arg46Gln	p.R46Q	ENST00000375499	NM_003000.2	46	cGa/cAa																																																																															
ATM	472	MSKCC	GRCh37	11	108186601	108186601	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	73	391	0	ENST00000278616.4:c.6058G>T	p.Gly2020Cys	p.G2020C	ENST00000278616	NM_000051.3	2020	Ggc/Tgc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141566300	141566300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	93	490	0	ENST00000220592.5:c.1112C>T	p.Ser371Leu	p.S371L	ENST00000220592	NM_012154.3	371	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0086597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	115	550	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0086597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	48	458	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
APC	324	MSKCC	GRCh37	5	112157650	112157650	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs1060503333		P-0086597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	25	283	0	ENST00000257430.4:c.1370C>G	p.Ser457Ter	p.S457*	ENST00000257430	NM_000038.5	457	tCa/tGa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0086597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	59	374	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487277	56487277	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1035001455		P-0086597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	63	380	0	ENST00000267101.3:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000267101	NM_001982.3	475	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	75	360	1	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15374337	15374337	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	41	432	0	ENST00000263377.2:c.1235A>G	p.Tyr412Cys	p.Y412C	ENST00000263377	NM_058243.2	412	tAc/tGc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912122	114912122	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0086597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	105	357	0	ENST00000543371.1:c.1194del	p.Lys398AsnfsTer93	p.K398Nfs*93	ENST00000543371	NM_001198531.1	398	Aaa/aa																																																																															
TP63	8626	MSKCC	GRCh37	3	189586401	189586401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	114	372	0	ENST00000264731.3:c.1025C>A	p.Ala342Asp	p.A342D	ENST00000264731	NM_003722.4	342	gCc/gAc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660886	227660886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	53	518	0	ENST00000305123.5:c.2569C>T	p.Arg857Trp	p.R857W	ENST00000305123	NM_005544.2	857	Cgg/Tgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906916	32906919	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-	rs80359277		P-0086599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	39	476	0	ENST00000380152.3:c.1310_1313del	p.Lys437IlefsTer22	p.K437Ifs*22	ENST00000380152		434	aAAAGa/aa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440939	56440939	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	40	441	0	ENST00000407977.2:c.398G>T	p.Gly133Val	p.G133V	ENST00000407977		133	gGa/gTa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118359350	118359351	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0086599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	36	423	0	ENST00000534358.1:c.4356_4357del	p.Cys1452Ter	p.C1452*	ENST00000534358	NM_005933.3	1452	TGt/t																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436074	56436074	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			816	143	663	0	ENST00000407977.2:c.1063G>T	p.Ala355Ser	p.A355S	ENST00000407977		355	Gct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0086600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	18	334	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0085962-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			391	279	533	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																															
RET	5979	MSKCC	GRCh37	10	43615183	43615183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085962-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			440	224	431	0	ENST00000355710.3:c.2597C>T	p.Ala866Val	p.A866V	ENST00000355710	NM_020975.4	866	gCc/gTc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162273	38162273	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0085962-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			306	196	360	0	ENST00000317025.8:c.2443C>T	p.Arg815Cys	p.R815C	ENST00000317025	NM_023034.1	815	Cgc/Tgc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098952	178098957	+	inframe_deletion	In_Frame_Del	DEL	TCCAAG	TCCAAG	-			P-0085962-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			324	220	409	0	ENST00000397062.3:c.88_93del	p.Leu30_Gly31del	p.L30_G31del	ENST00000397062	NM_006164.4	30	CTTGGA/-																																																																															
MET	4233	MSKCC	GRCh37	7	116371903	116371919	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTTCATGCAGGTAAGT	GCTTCATGCAGGTAAGT	-			P-0085962-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			516	291	382	0	ENST00000397752.3:c.1386_1392+10del		p.X462_splice	ENST00000397752	NM_000245.2	462																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32163317	32163317	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085962-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			677	295	504	0	ENST00000375023.3:c.5909C>G	p.Pro1970Arg	p.P1970R	ENST00000375023	NM_004557.3	1970	cCt/cGt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52719902	52719902	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085962-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			352	230	469	0	ENST00000322088.6:c.1114C>G	p.Gln372Glu	p.Q372E	ENST00000322088	NM_014225.5	372	Cag/Gag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738078	145738078	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085962-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			609	349	514	0	ENST00000428558.2:c.2832T>G	p.His944Gln	p.H944Q	ENST00000428558	NM_004260.3	944	caT/caG																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2218112	2218112	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	66	471	0	ENST00000326181.6:c.174G>C	p.Arg58Ser	p.R58S	ENST00000326181	NM_032271.2	58	agG/agC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057520000		P-0086614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	137	452	0	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0086614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	32	264	2	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0086614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	47	377	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729612	41729612	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1202073030		P-0086614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	51	476	0	ENST00000242208.4:c.917G>A	p.Arg306His	p.R306H	ENST00000242208	NM_002192.2	306	cGc/cAc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805398	32805398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	69	389	0	ENST00000374899.4:c.524G>A	p.Arg175His	p.R175H	ENST00000374899	NM_018833.2	175	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs863224499		P-0086627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	52	368	0	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0086627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	20	203	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023839	27023839	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	53	341	0	ENST00000324856.7:c.945del	p.Tyr316ThrfsTer47	p.Y316Tfs*47	ENST00000324856	NM_006015.4	315	gaC/ga																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980421	1980421	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0086627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	35	313	0	ENST00000382895.3:c.3883T>G	p.Phe1295Val	p.F1295V	ENST00000382895	NM_133330.2	1295	Ttt/Gtt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686373	30686373	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	58	389	0	ENST00000359013.4:c.304T>A	p.Cys102Ser	p.C102S	ENST00000359013	NM_001024847.2	102	Tgt/Agt																																																																															
UPF1	5976	MSKCC	GRCh37	19	18968321	18968321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	36	284	0	ENST00000262803.5:c.2161C>T	p.Leu721Phe	p.L721F	ENST00000262803	NM_002911.3	721	Ctc/Ttc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0008984-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			427	126	379	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0008984-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			435	123	456	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852217		P-0085494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	300	192	0	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
TET1	80312	MSKCC	GRCh37	10	70405958	70405958	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370887665		P-0085494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	154	331	0	ENST00000373644.4:c.3472C>T	p.Arg1158Trp	p.R1158W	ENST00000373644	NM_030625.2	1158	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-	rs587780067		P-0085494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	293	336	0	ENST00000269305.4:c.365_366del	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508082	106508082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	121	344	0	ENST00000359195.3:c.76C>T	p.Arg26Cys	p.R26C	ENST00000359195	NM_002649.2	26	Cgc/Tgc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41251801	41251801	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	211	300	0	ENST00000357654.3:c.538A>G	p.Ile180Val	p.I180V	ENST00000357654	NM_007294.3	180	Att/Gtt																																																																															
APC	324	MSKCC	GRCh37	5	112174502	112174508	+	frameshift_variant	Frame_Shift_Del	DEL	CAAAGTA	CAAAGTA	-			P-0085494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	210	378	0	ENST00000257430.4:c.3214_3220del	p.Ser1072LeufsTer52	p.S1072Lfs*52	ENST00000257430	NM_000038.5	1071	CAAAGTAca/ca																																																																															
APC	324	MSKCC	GRCh37	5	112175656	112175661	+	frameshift_variant	Frame_Shift_Ins	INS	TAAAGC	TAAAGC	CAAAAGA			P-0085494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	142	390	1	ENST00000257430.4:c.4365_4370delinsCAAAAGA	p.Ala1457ArgfsTer5	p.A1457Rfs*5	ENST00000257430	NM_000038.5	1455	aaTAAAGCa/aaCAAAAGAa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060786	38060787	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCTC			P-0086042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	207	588	0	ENST00000250448.2:c.1202_1203insGAGA	p.Ile402ArgfsTer14	p.I402Rfs*14	ENST00000250448	NM_004496.3	401	tcc/tcGAGAc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0086046-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	51	300	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
RAD50	10111	MSKCC	GRCh37	5	131973881	131973881	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0086046-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	85	391	0	ENST00000265335.6:c.3584T>G	p.Leu1195Trp	p.L1195W	ENST00000265335		1195	tTg/tGg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931503	131931503	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0086046-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	142	413	0	ENST00000265335.6:c.2207+1G>A		p.X736_splice	ENST00000265335		736																																																																																
RASA1	5921	MSKCC	GRCh37	5	86685337	86685337	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775179017		P-0086046-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	81	333	0	ENST00000274376.6:c.3053C>T	p.Ala1018Val	p.A1018V	ENST00000274376	NM_002890.2	1018	gCa/gTa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602878	10602878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	164	635	0	ENST00000171111.5:c.700C>T	p.Arg234Trp	p.R234W	ENST00000171111	NM_203500.1	234	Cgg/Tgg																																																																															
POT1	25913	MSKCC	GRCh37	7	124503533	124503533	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	117	598	0	ENST00000357628.3:c.417G>T	p.Trp139Cys	p.W139C	ENST00000357628	NM_015450.2	139	tgG/tgT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971099	21971099	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749714198		P-0086047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	149	550	0	ENST00000304494.5:c.259C>T	p.Arg87Trp	p.R87W	ENST00000304494	NM_000077.4	87	Cgg/Tgg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118353175	118353175	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	127	487	0	ENST00000534358.1:c.4051C>G	p.Pro1351Ala	p.P1351A	ENST00000534358	NM_005933.3	1351	Cca/Gca																																																																															
GAB2	9846	MSKCC	GRCh37	11	77991677	77991677	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	180	641	2	ENST00000361507.4:c.346T>C	p.Cys116Arg	p.C116R	ENST00000361507	NM_080491.2	116	Tgt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577483	7577524	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCAAGTGGCTCCTGACCTGGAGTCTTCCAGTGTGATGATGGT	GCAAGTGGCTCCTGACCTGGAGTCTTCCAGTGTGATGATGGT	-			P-0086047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	110	544	0	ENST00000269305.4:c.757_782+16del		p.X253_splice	ENST00000269305	NM_001126112.2	253																																																																																
ALK	238	MSKCC	GRCh37	2	29754892	29754892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	159	651	0	ENST00000389048.3:c.1043C>T	p.Ala348Val	p.A348V	ENST00000389048	NM_004304.4	348	gCc/gTc																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502252	186502252	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	269	587	0	ENST00000323963.5:c.61G>T	p.Asp21Tyr	p.D21Y	ENST00000323963		21	Gat/Tat																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527845	157527845	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0086047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	153	691	0	ENST00000346085.5:c.5570A>T	p.Lys1857Ile	p.K1857I	ENST00000346085	NM_020732.3	1857	aAa/aTa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974679	21974713	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GGATCGGCCTCCGACCGTAACTATTCGGTGCGTTG	GGATCGGCCTCCGACCGTAACTATTCGGTGCGTTG	-			P-0086047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	117	649	0	ENST00000304494.5:c.114_148del	p.Asn39GlyfsTer69	p.N39Gfs*69	ENST00000304494	NM_000077.4	38	ccCAACGCACCGAATAGTTACGGTCGGAGGCCGATCCag/ccag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086307-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	187	478	0	ENST00000347630.2:c.393G>C	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416488	49416488	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086307-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	241	630	0	ENST00000301067.7:c.16223del	p.Gly5408AlafsTer10	p.G5408Afs*10	ENST00000301067	NM_003482.3	5408	gGc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0086550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	248	370	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971170	21971170	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0086550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	140	448	0	ENST00000304494.5:c.188T>A	p.Leu63Gln	p.L63Q	ENST00000304494	NM_000077.4	63	cTg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431721	49431722	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0086550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	246	578	1	ENST00000301067.7:c.9417dup	p.Lys3140GlnfsTer36	p.K3140Qfs*36	ENST00000301067	NM_003482.3	3139	-/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0086550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	81	255	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0086553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	153	450	2	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0086553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			37	77	129	1	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52729232	52729232	+	stop_lost	Nonstop_Mutation	SNP	T	T	G			P-0086553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	417	470	2	ENST00000322088.6:c.1768T>G	p.Ter590GlyextTer74	p.*590Gext*74	ENST00000322088	NM_014225.5	590	Tga/Gga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306509	41306509	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1778	103	360	0	ENST00000373198.4:c.1150G>T	p.Ala384Ser	p.A384S	ENST00000373198	NM_133170.3	384	Gca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs886039484		P-0086555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	156	532	0	ENST00000269305.4:c.643A>C	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	Agt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970951	21970969	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCCCGCAGCCGCGCGCA	CCCCCCGCAGCCGCGCGCA	-			P-0086555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	92	577	1	ENST00000304494.5:c.389_407del	p.Leu130ProfsTer10	p.L130Pfs*10	ENST00000304494	NM_000077.4	130	cTGCGCGCGGCTGCGGGGGGc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446493	49446493	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0086555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	92	542	0	ENST00000301067.7:c.1113-1G>T		p.X371_splice	ENST00000301067	NM_003482.3	371																																																																																
TSC2	7249	MSKCC	GRCh37	16	2112496	2112496	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0086555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	126	415	0	ENST00000219476.3:c.1258-2A>T		p.X420_splice	ENST00000219476	NM_000548.3	420																																																																																
NEGR1	257194	MSKCC	GRCh37	1	72076711	72076711	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0086555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	70	454	0	ENST00000357731.5:c.786G>T	p.Lys262Asn	p.K262N	ENST00000357731	NM_173808.2	262	aaG/aaT																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150933320	150933320	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746536604		P-0086555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	99	671	0	ENST00000271640.5:c.2782C>T	p.Arg928Trp	p.R928W	ENST00000271640	NM_001145415.1	928	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16174587	16174587	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	93	398	0	ENST00000375759.3:c.25T>C	p.Trp9Arg	p.W9R	ENST00000375759	NM_015001.2	9	Tgg/Cgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49439912	49439928	+	frameshift_variant	Frame_Shift_Del	DEL	CACATCGTCCTCTGTGA	CACATCGTCCTCTGTGA	-			P-0086555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	83	553	0	ENST00000301067.7:c.4613_4629del	p.Phe1538Ter	p.F1538*	ENST00000301067	NM_003482.3	1538	tTCACAGAGGACGATGTG/t																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233572	69233572	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	40	477	0	ENST00000462284.1:c.1437G>T	p.Lys479Asn	p.K479N	ENST00000462284	NM_002392.5	479	aaG/aaT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0085639-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	224	332	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TSC2	7249	MSKCC	GRCh37	16	2106696	2106696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085639-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			456	36	292	0	ENST00000219476.3:c.700G>A	p.Glu234Lys	p.E234K	ENST00000219476	NM_000548.3	234	Gag/Aag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733217	40733217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085639-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			510	51	358	0	ENST00000373198.4:c.3589G>A	p.Glu1197Lys	p.E1197K	ENST00000373198	NM_133170.3	1197	Gaa/Aaa																																																																															
MET	4233	MSKCC	GRCh37	7	116409831	116409831	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778115147		P-0085639-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			629	38	349	0	ENST00000397752.3:c.2716G>A	p.Glu906Lys	p.E906K	ENST00000397752	NM_000245.2	906	Gag/Aag																																																																															
MST1R	4486	MSKCC	GRCh37	3	49924754	49924754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085639-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	40	412	0	ENST00000296474.3:c.4189C>T	p.Pro1397Ser	p.P1397S	ENST00000296474	NM_002447.2	1397	Cct/Tct																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18715723	18715723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085639-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			498	34	474	0	ENST00000266497.5:c.3554C>T	p.Ala1185Val	p.A1185V	ENST00000266497		1185	gCc/gTc																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128230261	128230261	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085639-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	79	375	0	ENST00000265960.3:c.1335G>C	p.Glu445Asp	p.E445D	ENST00000265960	NM_001006617.1	445	gaG/gaC																																																																															
SDHA	6389	MSKCC	GRCh37	5	231091	231091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085639-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			210	46	235	0	ENST00000264932.6:c.871G>C	p.Glu291Gln	p.E291Q	ENST00000264932	NM_004168.2	291	Gag/Cag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2098721	2098721	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085639-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			489	27	348	0	ENST00000219476.3:c.105G>C	p.Gln35His	p.Q35H	ENST00000219476	NM_000548.3	35	caG/caC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433860	49433860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085639-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			697	109	546	0	ENST00000301067.7:c.7693C>T	p.His2565Tyr	p.H2565Y	ENST00000301067	NM_003482.3	2565	Cat/Tat																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862879	9862879	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085639-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			751	67	379	0	ENST00000330684.3:c.2424G>C	p.Met808Ile	p.M808I	ENST00000330684	NM_001134407.1	808	atG/atC																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143998	11143998	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085639-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			515	77	384	0	ENST00000344626.4:c.3579C>G	p.Ile1193Met	p.I1193M	ENST00000344626	NM_003072.3	1193	atC/atG																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416854	121416854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085639-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			644	95	402	0	ENST00000257555.6:c.283G>C	p.Glu95Gln	p.E95Q	ENST00000257555		95	Gag/Cag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10266601	10266601	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085639-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			477	40	308	0	ENST00000340748.4:c.1372C>G	p.Leu458Val	p.L458V	ENST00000340748		458	Ctt/Gtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579336	7579336	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	441	579	0	ENST00000269305.4:c.351del	p.Thr118GlnfsTer5	p.T118Qfs*5	ENST00000269305	NM_001126112.2	117	ggG/gg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49418670	49418670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs587783698		P-0086049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	289	538	0	ENST00000301067.7:c.15844C>T	p.Arg5282Ter	p.R5282*	ENST00000301067	NM_003482.3	5282	Cga/Tga																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44919330	44919330	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	114	198	0	ENST00000377967.4:c.1258G>C	p.Glu420Gln	p.E420Q	ENST00000377967	NM_021140.2	420	Gag/Cag																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424811	47424811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	409	599	0	ENST00000404338.3:c.2879C>T	p.Ala960Val	p.A960V	ENST00000404338	NM_004491.4	960	gCc/gTc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528483	157528483	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	120	530	0	ENST00000346085.5:c.6208G>C	p.Val2070Leu	p.V2070L	ENST00000346085	NM_020732.3	2070	Gtg/Ctg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707835	176707835	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0086049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	109	430	0	ENST00000439151.2:c.5892+1del		p.K1964fs	ENST00000439151	NM_022455.4	1964	aaG/aa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223292	36223292	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			749	333	698	0	ENST00000222270.7:c.5842G>T	p.Val1948Phe	p.V1948F	ENST00000222270	NM_014727.1	1948	Gtc/Ttc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63409812	63409812	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	184	628	0	ENST00000330258.3:c.3355T>C	p.Ser1119Pro	p.S1119P	ENST00000330258	NM_152424.3	1119	Tct/Cct																																																																															
CD276	80381	MSKCC	GRCh37	15	73996011	73996011	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	35	507	0	ENST00000318443.5:c.745G>T	p.Val249Phe	p.V249F	ENST00000318443	NM_001024736.1	249	Gtc/Ttc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520209	9520209	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	234	475	0	ENST00000353224.5:c.2060A>G	p.Gln687Arg	p.Q687R	ENST00000353224	NM_177990.2	687	cAg/cGg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245984	46245984	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	94	550	0	ENST00000334344.6:c.4078G>C	p.Gly1360Arg	p.G1360R	ENST00000334344	NM_152641.2	1360	Gga/Cga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484354	8484354	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	390	396	0	ENST00000356435.5:c.3178G>T	p.Val1060Leu	p.V1060L	ENST00000356435		1060	Gta/Tta																																																																															
ATRX	546	MSKCC	GRCh37	X	76856006	76856006	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	94	477	0	ENST00000373344.5:c.5594G>T	p.Arg1865Ile	p.R1865I	ENST00000373344	NM_000489.3	1865	aGa/aTa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437476	52437484	+	frameshift_variant	Frame_Shift_Del	DEL	AGCAGGCCT	AGCAGGCCT	C			P-0086049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	406	537	0	ENST00000460680.1:c.1677_1685delinsG	p.Gly560AlafsTer4	p.G560Afs*4	ENST00000460680	NM_004656.3	559	acAGGCCTGCTg/acGg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174416	11174416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	21	367	0	ENST00000361445.4:c.7259C>T	p.Ala2420Val	p.A2420V	ENST00000361445	NM_004958.3	2420	gCc/gTc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843578	156843578	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758490619		P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	134	552	0	ENST00000524377.1:c.1004C>T	p.Pro335Leu	p.P335L	ENST00000524377	NM_002529.3	335	cCg/cTg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599271	28599271	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1457528646		P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	139	611	0	ENST00000253063.3:c.722del	p.Pro241GlnfsTer6	p.P241Qfs*6	ENST00000253063	NM_031459.4	239	agC/ag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330537	65330537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	141	433	0	ENST00000342505.4:c.1109C>A	p.Pro370His	p.P370H	ENST00000342505	NM_002227.2	370	cCt/cAt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851679	63851679	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	140	529	0	ENST00000279873.7:c.2461del	p.His821IlefsTer61	p.H821Ifs*61	ENST00000279873	NM_032199.2	819	ctC/ct																																																																															
TET1	80312	MSKCC	GRCh37	10	70446284	70446284	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	65	498	2	ENST00000373644.4:c.5230del	p.Arg1744GlufsTer18	p.R1744Efs*18	ENST00000373644	NM_030625.2	1742	Aaa/aa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	113	476	0	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																															
CTR9	9646	MSKCC	GRCh37	11	10800269	10800269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs567678481		P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	163	483	0	ENST00000361367.2:c.3139G>A	p.Glu1047Lys	p.E1047K	ENST00000361367	NM_014633.3	1047	Gaa/Aaa																																																																															
SESN3	143686	MSKCC	GRCh37	11	94918463	94918463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	81	374	0	ENST00000536441.1:c.719A>G	p.Asp240Gly	p.D240G	ENST00000536441	NM_144665.3	240	gAc/gGc																																																																															
POLE	5426	MSKCC	GRCh37	12	133209304	133209304	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	113	484	0	ENST00000320574.5:c.6082A>G	p.Arg2028Gly	p.R2028G	ENST00000320574	NM_006231.2	2028	Agg/Ggg																																																																															
POLE	5426	MSKCC	GRCh37	12	133226031	133226031	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781298285		P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	97	492	0	ENST00000320574.5:c.3866G>A	p.Arg1289His	p.R1289H	ENST00000320574	NM_006231.2	1289	cGc/cAc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56494877	56494877	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	30	401	0	ENST00000267101.3:c.3238del	p.Arg1080ValfsTer22	p.R1080Vfs*22	ENST00000267101	NM_001982.3	1078	tgC/tg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	129	420	2	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28959048	28959048	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	151	442	0	ENST00000282397.4:c.2090del	p.Asn697ThrfsTer13	p.N697Tfs*13	ENST00000282397	NM_002019.4	697	aAc/ac																																																																															
DIS3	22894	MSKCC	GRCh37	13	73336100	73336100	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs117383606		P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	81	460	2	ENST00000377767.4:c.2303C>T	p.Ala768Val	p.A768V	ENST00000377767	NM_014953.3	768	gCg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777838	3777838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863223334		P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	145	624	0	ENST00000262367.5:c.7210G>A	p.Glu2404Lys	p.E2404K	ENST00000262367	NM_004380.2	2404	Gaa/Aaa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843553	3843553	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	139	476	1	ENST00000262367.5:c.1050del	p.Lys350AsnfsTer4	p.K350Nfs*4	ENST00000262367	NM_004380.2	350	aaA/aa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	34	572	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544191	86544191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	55	520	0	ENST00000262426.4:c.16G>A	p.Glu6Lys	p.E6K	ENST00000262426	NM_001451.2	6	Gag/Aag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	264	663	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532556	63532556	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	145	532	2	ENST00000307078.5:c.2023del	p.Arg675ValfsTer14	p.R675Vfs*14	ENST00000307078	NM_004655.3	675	Cgt/gt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	136	521	1	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	13	397	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11024706	11024706	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139789571		P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	27	393	0	ENST00000327064.4:c.823G>A	p.Ala275Thr	p.A275T	ENST00000327064	NM_199141.1	275	Gcc/Acc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276860	15276861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs753725730		P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	116	541	3	ENST00000263388.2:c.5404dup	p.Ala1802GlyfsTer8	p.A1802Gfs*8	ENST00000263388	NM_000435.2	1802	gct/gGct																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967091	18967092	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs1384543747		P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	92	374	3	ENST00000262803.5:c.1814_1815del	p.Glu605AlafsTer17	p.E605Afs*17	ENST00000262803	NM_002911.3	602	gcAGag/gcag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229231	36229231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	144	551	0	ENST00000222270.7:c.7921G>A	p.Ala2641Thr	p.A2641T	ENST00000222270	NM_014727.1	2641	Gcc/Acc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855584	45855584	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	101	479	0	ENST00000391945.4:c.2073del	p.Lys692SerfsTer17	p.K692Sfs*17	ENST00000391945	NM_000400.3	691	ggG/gg																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111907638	111907638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	138	446	0	ENST00000393256.3:c.412G>A	p.Glu138Lys	p.E138K	ENST00000393256	NM_006538.4	138	Gaa/Aaa																																																																															
BARD1	580	MSKCC	GRCh37	2	215645974	215645975	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs587780033		P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	77	421	2	ENST00000260947.4:c.623dup	p.Lys209GlufsTer5	p.K209Efs*5	ENST00000260947	NM_000465.2	208	aag/aaAg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794117	242794117	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773349951		P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	96	290	2	ENST00000334409.5:c.611G>A	p.Arg204His	p.R204H	ENST00000334409	NM_005018.2	204	cGc/cAc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213243	39213243	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	119	538	1	ENST00000402219.2:c.3724del	p.Ser1242ValfsTer37	p.S1242Vfs*37	ENST00000402219	NM_005633.3	1242	Agt/gt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025856	48025857	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	39	414	0	ENST00000234420.5:c.741dup	p.Arg248ThrfsTer8	p.R248Tfs*8	ENST00000234420	NM_000179.2	245	ata/atAa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468398	89468398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	68	394	1	ENST00000336596.2:c.1938del	p.Glu647ArgfsTer9	p.E647Rfs*9	ENST00000336596	NM_005233.5	644	tcA/tc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1962801	1962801	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772470710		P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	166	455	0	ENST00000382895.3:c.3295G>A	p.Glu1099Lys	p.E1099K	ENST00000382895	NM_133330.2	1099	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1294088	1294088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	149	570	0	ENST00000310581.5:c.913G>A	p.Ala305Thr	p.A305T	ENST00000310581	NM_198253.2	305	Gcg/Acg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176631130	176631130	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1217840079		P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	122	375	0	ENST00000439151.2:c.1073G>A	p.Arg358Gln	p.R358Q	ENST00000439151	NM_022455.4	358	cGg/cAg																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31238895	31238895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	28	397	0	ENST00000376228.5:c.574C>T	p.Leu192Phe	p.L192F	ENST00000376228	NM_002117.5	192	Ctc/Ttc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288774	33288774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	122	431	0	ENST00000374542.5:c.778C>T	p.Arg260Cys	p.R260C	ENST00000374542	NM_001141970.1	260	Cgt/Tgt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	85	371	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152027685	152027685	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	142	403	0	ENST00000262189.6:c.389+1G>C		p.X130_splice	ENST00000262189	NM_170606.2	130																																																																																
PMS2	5395	MSKCC	GRCh37	7	6043349	6043349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			60	23	98	0	ENST00000265849.7:c.325del	p.Glu109LysfsTer3	p.E109Kfs*3	ENST00000265849	NM_000535.5	109	Gaa/aa																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300040	137300040	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	86	438	0	ENST00000481739.1:c.331del	p.Leu111TrpfsTer57	p.L111Wfs*57	ENST00000481739	NM_002957.4	109	Ccc/cc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2060970	2060970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758647013		P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	170	553	1	ENST00000349721.2:c.1676G>A	p.Arg559Lys	p.R559K	ENST00000349721	NM_003070.3	559	aGg/aAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971057	21971057	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs104894094		P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	21	483	0	ENST00000304494.5:c.301G>T	p.Gly101Trp	p.G101W	ENST00000304494	NM_000077.4	101	Ggg/Tgg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	94	457	0	ENST00000331920.6:c.3921del	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
MED12	9968	MSKCC	GRCh37	X	70361086	70361091	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	75	571	0	ENST00000374080.3:c.6285_6290del	p.Gln2114_Gln2115del	p.Q2114_Q2115del	ENST00000374080		2092	CAGCAA/-																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115282331	115282331	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	102	324	0	ENST00000438362.2:c.319C>T	p.Gln107Ter	p.Q107*	ENST00000438362	NM_001242891.1	107	Caa/Taa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948617	71948617	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	102	549	0	ENST00000298229.2:c.3329T>C	p.Leu1110Pro	p.L1110P	ENST00000298229	NM_001567.3	1110	cTg/cCg																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66777493	66777493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	85	509	0	ENST00000307102.5:c.859C>T	p.Pro287Ser	p.P287S	ENST00000307102	NM_002755.3	287	Cca/Tca																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098446	11098446	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060502089		P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	80	452	0	ENST00000344626.4:c.964G>A	p.Ala322Thr	p.A322T	ENST00000344626	NM_003072.3	322	Gcc/Acc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662752	227662752	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	108	530	2	ENST00000305123.5:c.703del	p.Glu235SerfsTer26	p.E235Sfs*26	ENST00000305123	NM_005544.2	235	Gag/ag																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793447	242793447	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	34	444	0	ENST00000334409.5:c.630G>T	p.Lys210Asn	p.K210N	ENST00000334409	NM_005018.2	210	aaG/aaT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944439	40944439	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs926421412		P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	119	466	0	ENST00000373198.4:c.2063A>G	p.Asn688Ser	p.N688S	ENST00000373198	NM_133170.3	688	aAt/aGt																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29280019	29280019	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	119	481	0	ENST00000544604.2:c.268del	p.Ala90ProfsTer32	p.A90Pfs*32	ENST00000544604	NM_001206998.1	89	Ggg/gg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12475579	12475579	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	29	467	0	ENST00000287820.6:c.1453A>G	p.Lys485Glu	p.K485E	ENST00000287820	NM_015869.4	485	Aag/Gag																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186507014	186507014	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	62	397	0	ENST00000323963.5:c.1180A>G	p.Thr394Ala	p.T394A	ENST00000323963		394	Act/Gct																																																																															
MITF	4286	MSKCC	GRCh37	3	70014128	70014128	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	122	453	0	ENST00000352241.4:c.1292A>C	p.Gln431Pro	p.Q431P	ENST00000352241	NM_198159.2	431	cAg/cCg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1940176	1940179	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGAG	AGAG	-			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	41	140	0	ENST00000382895.3:c.1676_1679del		p.X559_splice	ENST00000382895	NM_133330.2	559																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66217312	66217312	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	91	378	0	ENST00000273854.3:c.2303A>T	p.Asn768Ile	p.N768I	ENST00000273854	NM_004439.5	768	aAc/aTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356129	66356129	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	103	443	0	ENST00000273854.3:c.1368G>C	p.Gln456His	p.Q456H	ENST00000273854	NM_004439.5	456	caG/caC																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38967295	38967295	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	92	406	0	ENST00000357387.3:c.1186C>G	p.Leu396Val	p.L396V	ENST00000357387	NM_152756.3	396	Ctc/Gtc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161218	56161218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	120	347	0	ENST00000399503.3:c.1087C>T	p.Leu363Phe	p.L363F	ENST00000399503	NM_005921.1	363	Ctc/Ttc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910608	29910608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	168	616	0	ENST00000376809.5:c.148G>T	p.Gly50Cys	p.G50C	ENST00000376809	NM_002116.7	50	Ggc/Tgc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190533	32190533	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	28	555	0	ENST00000375023.3:c.206A>G	p.Gln69Arg	p.Q69R	ENST00000375023	NM_004557.3	69	cAg/cGg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2084105	2084105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	40	316	0	ENST00000349721.2:c.2435G>A	p.Arg812His	p.R812H	ENST00000349721	NM_003070.3	812	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0086501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			51	324	271	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MAX	4149	MSKCC	GRCh37	14	65568287	65568287	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0086501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	76	272	0	ENST00000358664.4:c.40G>T	p.Glu14Ter	p.E14*	ENST00000358664	NM_002382.4	14	Gag/Tag																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39620704	39620704	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0086501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	90	339	0	ENST00000262039.4:c.2102A>G	p.Gln701Arg	p.Q701R	ENST00000262039	NM_002647.2	701	cAg/cGg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2193773	2193773	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	164	417	0	ENST00000398665.3:c.579G>T	p.Lys193Asn	p.K193N	ENST00000398665	NM_032482.2	193	aaG/aaT																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26029154	26029154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	301	352	0	ENST00000435504.4:c.196G>T	p.Gly66Cys	p.G66C	ENST00000435504		66	Ggt/Tgt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1940176	1940176	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0086501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			71	39	137	0	ENST00000382895.3:c.1675-2A>T		p.X559_splice	ENST00000382895	NM_133330.2	559																																																																																
DAXX	1616	MSKCC	GRCh37	6	33289268	33289268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	166	459	0	ENST00000374542.5:c.284C>T	p.Ala95Val	p.A95V	ENST00000374542	NM_001141970.1	95	gCc/gTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21968243	21968243	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0086501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	203	456	0	ENST00000304494.5:c.458-2A>C		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0086502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	91	318	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519986		P-0086502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	107	461	0	ENST00000269305.4:c.809T>G	p.Phe270Cys	p.F270C	ENST00000269305	NM_001126112.2	270	tTt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0086556-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	236	493	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
STK11	6794	MSKCC	GRCh37	19	1219413	1219413	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs730881971		P-0086556-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	105	478	0	ENST00000326873.7:c.464+1G>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
SETD2	29072	MSKCC	GRCh37	3	47144909	47144909	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1373021859		P-0086556-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	107	392	0	ENST00000409792.3:c.4844T>C	p.Ile1615Thr	p.I1615T	ENST00000409792	NM_014159.6	1615	aTa/aCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0086556-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	90	331	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162974	47162974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086556-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	125	512	0	ENST00000409792.3:c.3152C>T	p.Ser1051Leu	p.S1051L	ENST00000409792	NM_014159.6	1051	tCa/tTa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981199	201981199	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0086556-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	149	614	0	ENST00000359651.3:c.278C>A	p.Ser93Ter	p.S93*	ENST00000359651		93	tCa/tAa																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986746	36986746	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086556-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	129	576	1	ENST00000354822.5:c.943del	p.His315ThrfsTer66	p.H315Tfs*66	ENST00000354822	NM_001079668.2	315	Cac/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0085991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	60	315	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ATM	472	MSKCC	GRCh37	11	108150233	108150233	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	72	368	0	ENST00000278616.4:c.3300del	p.Lys1101ArgfsTer8	p.K1101Rfs*8	ENST00000278616	NM_000051.3	1100	acG/ac																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980625	1980625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	110	576	0	ENST00000382895.3:c.4087G>A	p.Glu1363Lys	p.E1363K	ENST00000382895	NM_133330.2	1363	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0086428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	106	420	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0086428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	196	273	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0086429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	55	221	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0086429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	61	418	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0086429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	46	268	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0086429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	69	352	0	ENST00000257430.4:c.4128T>G	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taG																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710517	114710517	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0086429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	88	401	0	ENST00000543371.1:c.2T>A	p.Met1?	p.M1?	ENST00000543371	NM_001198531.1	1	aTg/aAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0086429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	78	359	0	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0086429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	91	260	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0086441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	113	225	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175536	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0086441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	119	424	0	ENST00000257430.4:c.4245del	p.Ser1415ArgfsTer4	p.S1415Rfs*4	ENST00000257430	NM_000038.5	1415	agT/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0086441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	68	197	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435706	49435706	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	171	448	0	ENST00000301067.7:c.6177del	p.Tyr2060ThrfsTer34	p.Y2060Tfs*34	ENST00000301067	NM_003482.3	2059	ccC/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0086464-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	27	356	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045518	47045518	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0086464-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	38	251	0	ENST00000329236.7:c.2251G>T	p.Glu751Ter	p.E751*	ENST00000329236	NM_001204466.1	751	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602926	10602926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086464-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	28	384	0	ENST00000171111.5:c.652G>A	p.Glu218Lys	p.E218K	ENST00000171111	NM_203500.1	218	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0086464-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	66	266	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455081	50455081	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086464-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	24	333	0	ENST00000331340.3:c.628T>A	p.Tyr210Asn	p.Y210N	ENST00000331340	NM_006060.4	210	Tat/Aat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628914	187628914	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086464-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	37	497	0	ENST00000441802.2:c.2068G>T	p.Ala690Ser	p.A690S	ENST00000441802	NM_005245.3	690	Gca/Tca																																																																															
TERT	7015	MSKCC	GRCh37	5	1295648	1295648	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0086464-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	21	511	0				ENST00000310581	NM_198253.2																																																																																	
PTPRD	5789	MSKCC	GRCh37	9	8636793	8636793	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086464-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	39	356	0	ENST00000356435.5:c.116G>T	p.Gly39Val	p.G39V	ENST00000356435		39	gGa/gTa																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281344	49281344	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202077345		P-0086466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	236	492	0	ENST00000282018.3:c.391G>A	p.Val131Met	p.V131M	ENST00000282018	NM_020377.2	131	Gtg/Atg																																																																															
CDH1	999	MSKCC	GRCh37	16	68771367	68771367	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1440280370		P-0086466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	163	310	0	ENST00000261769.5:c.48+1G>A		p.X16_splice	ENST00000261769	NM_004360.3	16																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56482339	56482339	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	223	385	0	ENST00000267101.3:c.887T>A	p.Val296Glu	p.V296E	ENST00000267101	NM_001982.3	296	gTg/gAg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37056036	37056036	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0086466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	107	269	0	ENST00000231790.2:c.790+1del		p.X264_splice	ENST00000231790	NM_000249.3	264																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38061468	38061469	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0086466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	228	427	0	ENST00000250448.2:c.520_521delinsAA	p.Ser174Lys	p.S174K	ENST00000250448	NM_004496.3	174	TCg/AAg																																																																															
FH	2271	MSKCC	GRCh37	1	241661166	241661166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	157	335	1	ENST00000366560.3:c.1495G>A	p.Glu499Lys	p.E499K	ENST00000366560	NM_000143.3	499	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0086468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	839	454	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913381		P-0086468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	140	469	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577537	7577538	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0086468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	97	426	0	ENST00000269305.4:c.743_744delinsAA	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGG/cAA																																																																															
AGO2	27161	MSKCC	GRCh37	8	141551301	141551301	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0086468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	163	554	0	ENST00000220592.5:c.1996T>A	p.Phe666Ile	p.F666I	ENST00000220592	NM_012154.3	666	Ttc/Atc																																																																															
EP300	2033	MSKCC	GRCh37	22	41560070	41560070	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	60	315	0	ENST00000263253.7:c.3742A>G	p.Thr1248Ala	p.T1248A	ENST00000263253	NM_001429.3	1248	Aca/Gca																																																																															
IDH2	3418	MSKCC	GRCh37	15	90645594	90645594	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	67	285	0	ENST00000330062.3:c.29C>G	p.Ser10Trp	p.S10W	ENST00000330062	NM_002168.2	10	tCg/tGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0086470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	61	379	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0086470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	81	545	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039356	47039358	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0086470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	85	433	0	ENST00000329236.7:c.754_756del	p.Ser252del	p.S252del	ENST00000329236	NM_001204466.1	250	TCC/-																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266144	198266144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	47	328	0	ENST00000335508.6:c.2476G>A	p.Asp826Asn	p.D826N	ENST00000335508	NM_012433.2	826	Gat/Aat																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549025	21549025	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	86	318	0	ENST00000382592.4:c.3251A>T	p.Gln1084Leu	p.Q1084L	ENST00000382592	NM_014572.2	1084	cAg/cTg																																																																															
SYK	6850	MSKCC	GRCh37	9	93624511	93624511	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	74	407	0	ENST00000375746.1:c.602G>T	p.Gly201Val	p.G201V	ENST00000375746	NM_001174167.1	201	gGc/gTc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162722972	162722972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	90	366	0	ENST00000367921.3:c.170C>T	p.Ala57Val	p.A57V	ENST00000367921	NM_006182.2	57	gCt/gTt																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1051	226	583	3	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	447	486	7	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250508	110250508	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	193	316	3	ENST00000374672.4:c.167del	p.Pro56GlnfsTer58	p.P56Qfs*58	ENST00000374672	NM_004235.4	56	cCa/ca																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	124	346	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
TET2	54790	MSKCC	GRCh37	4	106156204	106156204	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150072691		P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	186	415	0	ENST00000380013.4:c.1105C>T	p.Arg369Trp	p.R369W	ENST00000380013	NM_001127208.2	369	Cgg/Tgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832031	72832031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144091993		P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	360	409	4	ENST00000268489.5:c.4550C>T	p.Ser1517Leu	p.S1517L	ENST00000268489	NM_006885.3	1517	tCg/tTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	30946592	30946594	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs752094508		P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	107	228	1	ENST00000375687.4:c.25_27del	p.Lys9del	p.K9del	ENST00000375687	NM_015338.5	5	cAGAag/cag																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78866628	78866628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	363	360	1	ENST00000306801.3:c.2201G>A	p.Ser734Asn	p.S734N	ENST00000306801	NM_020761.2	734	aGc/aAc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612352	1612352	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748738693		P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	87	460	1	ENST00000344749.5:c.1667G>A	p.Arg556Gln	p.R556Q	ENST00000344749	NM_001136139.2	556	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023743	27023744	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	230	412	2	ENST00000324856.7:c.854dup	p.Thr286AsnfsTer114	p.T286Nfs*114	ENST00000324856	NM_006015.4	283	-/G																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211183	36211183	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	212	423	3	ENST00000222270.7:c.939del	p.Val314Ter	p.V314*	ENST00000222270	NM_014727.1	312	Aaa/aa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658901	3658901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	301	311	3	ENST00000294008.3:c.65C>T	p.Ala22Val	p.A22V	ENST00000294008	NM_032444.2	22	gCc/gTc																																																																															
MET	4233	MSKCC	GRCh37	7	116403302	116403302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	267	339	1	ENST00000397752.3:c.2563G>A	p.Glu855Lys	p.E855K	ENST00000397752	NM_000245.2	855	Gaa/Aaa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991695	72991695	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1383503121		P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			945	236	515	0	ENST00000268489.5:c.2350G>A	p.Ala784Thr	p.A784T	ENST00000268489	NM_006885.3	784	Gcc/Acc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	331	363	17	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149452997	149452997	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			832	59	426	0	ENST00000286301.3:c.949del	p.Glu317ArgfsTer55	p.E317Rfs*55	ENST00000286301	NM_005211.3	317	Gag/ag																																																																															
NF1	4763	MSKCC	GRCh37	17	29490261	29490261	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	316	325	1	ENST00000358273.4:c.346G>T	p.Glu116Ter	p.E116*	ENST00000358273	NM_001042492.2	116	Gaa/Taa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041702	14041702	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748870665		P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			754	172	416	0	ENST00000311895.7:c.2249G>A	p.Arg750His	p.R750H	ENST00000311895	NM_005236.2	750	cGc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70341001	70341001	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			931	143	397	0	ENST00000374080.3:c.734A>G	p.Gln245Arg	p.Q245R	ENST00000374080		245	cAg/cGg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966114	25966114	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	419	430	7	ENST00000435504.4:c.3092A>C	p.Gln1031Pro	p.Q1031P	ENST00000435504		1031	cAg/cCg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713258	30713258	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	367	400	4	ENST00000359013.4:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000359013	NM_001024847.2	220	Cag/Tag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812242	212812242	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	246	316	4	ENST00000342788.4:c.334G>C	p.Glu112Gln	p.E112Q	ENST00000342788	NM_005235.2	112	Gag/Cag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198274727	198274727	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	145	272	0	ENST00000335508.6:c.671del	p.Pro224LeufsTer7	p.P224Lfs*7	ENST00000335508	NM_012433.2	224	cCt/ct																																																																															
MLH1	4292	MSKCC	GRCh37	3	37055922	37055922	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	191	173	0	ENST00000231790.2:c.678-1G>C		p.X226_splice	ENST00000231790	NM_000249.3	226																																																																																
MSH6	2956	MSKCC	GRCh37	2	48033952	48033952	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	91	229	1	ENST00000234420.5:c.4036G>C	p.Asp1346His	p.D1346H	ENST00000234420	NM_000179.2	1346	Gat/Cat																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223269	2223269	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1181941603		P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			916	214	505	2	ENST00000326181.6:c.881C>T	p.Thr294Met	p.T294M	ENST00000326181	NM_032271.2	294	aCg/aTg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146130	38146130	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	207	423	0	ENST00000317025.8:c.3376C>T	p.Gln1126Ter	p.Q1126*	ENST00000317025	NM_023034.1	1126	Cag/Tag																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589755	69589755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1096	302	668	0	ENST00000168712.1:c.98C>T	p.Thr33Ile	p.T33I	ENST00000168712	NM_002007.2	33	aCt/aTt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462932	120462932	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264016887		P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	197	371	2	ENST00000256646.2:c.5399G>A	p.Arg1800His	p.R1800H	ENST00000256646	NM_024408.3	1800	cGt/cAt																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128347911	128347911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	164	383	0	ENST00000265960.3:c.594G>A	p.Met198Ile	p.M198I	ENST00000265960	NM_001006617.1	198	atG/atA																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10252789	10252789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	183	393	0	ENST00000340748.4:c.3176G>A	p.Arg1059His	p.R1059H	ENST00000340748		1059	cGc/cAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0086472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	78	285	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0086472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	135	493	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TET1	80312	MSKCC	GRCh37	10	70404752	70404752	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376909245		P-0086472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	86	379	1	ENST00000373644.4:c.2266G>A	p.Val756Ile	p.V756I	ENST00000373644	NM_030625.2	756	Gta/Ata																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969947	81969947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	103	405	0	ENST00000359376.3:c.3016G>A	p.Gly1006Ser	p.G1006S	ENST00000359376	NM_002661.3	1006	Ggt/Agt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964514	70964514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762086448		P-0086472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	192	496	0	ENST00000276594.2:c.1514G>A	p.Arg505His	p.R505H	ENST00000276594	NM_024504.3	505	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229189	36229189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	125	433	0	ENST00000222270.7:c.7879G>A	p.Gly2627Arg	p.G2627R	ENST00000222270	NM_014727.1	2627	Ggg/Agg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220382	1220382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0086473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	59	453	0	ENST00000326873.7:c.475C>T	p.Gln159Ter	p.Q159*	ENST00000326873	NM_000455.4	159	Cag/Tag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71096101	71096101	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0086473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	48	360	0	ENST00000318789.4:c.656T>G	p.Leu219Arg	p.L219R	ENST00000318789	NM_032682.5	219	cTt/cGt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347546	89347546	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0086473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	80	437	0	ENST00000301030.4:c.5404G>T	p.Glu1802Ter	p.E1802*	ENST00000301030	NM_001256183.1	1802	Gaa/Taa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162737067	162737067	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	34	504	0	ENST00000367921.3:c.1211G>T	p.Cys404Phe	p.C404F	ENST00000367921	NM_006182.2	404	tGc/tTc																																																																															
IL10	3586	MSKCC	GRCh37	1	206945738	206945738	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145922845		P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	63	547	0	ENST00000423557.1:c.43G>A	p.Gly15Arg	p.G15R	ENST00000423557	NM_000572.2	15	Ggg/Agg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106402	27106402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	51	538	0	ENST00000324856.7:c.6013C>T	p.Pro2005Ser	p.P2005S	ENST00000324856	NM_006015.4	2005	Cca/Tca																																																																															
ATM	472	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	67	380	0	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038900	12038900	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	49	432	0	ENST00000396373.4:c.1193T>A	p.Leu398Gln	p.L398Q	ENST00000396373	NM_001987.4	398	cTg/cAg																																																																															
RB1	5925	MSKCC	GRCh37	13	48881543	48881543	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	62	357	0	ENST00000267163.4:c.264+1G>T		p.X88_splice	ENST00000267163	NM_000321.2	88																																																																																
SCG5	6447	MSKCC	GRCh37	15	32935962	32935962	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs750372565		P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	44	454	0	ENST00000300175.4:c.169C>T	p.Arg57Ter	p.R57*	ENST00000300175	NM_001144757.1	57	Cga/Tga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679747	88679747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	73	444	0	ENST00000360948.2:c.716C>T	p.Pro239Leu	p.P239L	ENST00000360948	NM_001012338.2	239	cCt/cTt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354426	354426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	65	424	0	ENST00000262320.3:c.1132C>T	p.Pro378Ser	p.P378S	ENST00000262320	NM_003502.3	378	Ccg/Tcg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857958	9857958	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs140536516		P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	46	584	0	ENST00000330684.3:c.3443C>A	p.Pro1148Gln	p.P1148Q	ENST00000330684	NM_001134407.1	1148	cCg/cAg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475126	40475126	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	42	546	0	ENST00000264657.5:c.1784G>C	p.Arg595Pro	p.R595P	ENST00000264657	NM_139276.2	595	cGg/cCg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245012	41245012	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	33	526	0	ENST00000357654.3:c.2536G>C	p.Glu846Gln	p.E846Q	ENST00000357654	NM_007294.3	846	Gaa/Caa																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733218	74733218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	26	493	0	ENST00000359995.5:c.25G>A	p.Asp9Asn	p.D9N	ENST00000359995	NM_001195427.1	9	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863224683		P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	108	524	0	ENST00000269305.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000269305	NM_001126112.2	130	Ctc/Ttc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604707	48604707	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs377767371		P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	157	476	0	ENST00000342988.3:c.1529G>T	p.Gly510Val	p.G510V	ENST00000342988	NM_005359.5	510	gGa/gTa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56367746	56367746	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	127	345	1	ENST00000348428.3:c.572G>T	p.Arg191Leu	p.R191L	ENST00000348428	NM_006785.3	191	cGa/cTa																																																																															
CIC	23152	MSKCC	GRCh37	19	42795829	42795829	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	47	525	0	ENST00000575354.2:c.2818C>A	p.Gln940Lys	p.Q940K	ENST00000575354	NM_015125.3	940	Cag/Aag																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47425048	47425048	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758716231		P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	44	485	0	ENST00000404338.3:c.3116C>T	p.Pro1039Leu	p.P1039L	ENST00000404338	NM_004491.4	1039	cCg/cTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212483961	212483961	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	20	449	0	ENST00000342788.4:c.2242G>T	p.Val748Leu	p.V748L	ENST00000342788	NM_005235.2	748	Gtg/Ttg																																																																															
BARD1	580	MSKCC	GRCh37	2	215646134	215646134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	47	367	0	ENST00000260947.4:c.464G>T	p.Arg155Ile	p.R155I	ENST00000260947	NM_000465.2	155	aGa/aTa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467133	25467133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	104	543	0	ENST00000264709.3:c.1742G>T	p.Trp581Leu	p.W581L	ENST00000264709	NM_175629.2	581	tGg/tTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41400152	41400152	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	36	450	0	ENST00000373198.4:c.607G>T	p.Val203Leu	p.V203L	ENST00000373198	NM_133170.3	203	Gtg/Ttg																																																																															
TP63	8626	MSKCC	GRCh37	3	189607190	189607190	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	38	610	0	ENST00000264731.3:c.1569G>T	p.Gln523His	p.Q523H	ENST00000264731	NM_003722.4	523	caG/caT																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56152429	56152429	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs747333403		P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	60	416	0	ENST00000399503.3:c.485G>A	p.Arg162His	p.R162H	ENST00000399503	NM_005921.1	162	cGt/cAt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117665395	117665395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	44	408	0	ENST00000368508.3:c.4352C>T	p.Thr1451Ile	p.T1451I	ENST00000368508	NM_002944.2	1451	aCt/aTt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056500	26056500	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs372319415		P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	257	536	0	ENST00000343677.2:c.157G>C	p.Glu53Gln	p.E53Q	ENST00000343677	NM_005319.3	53	Gag/Cag																																																																															
HGF	3082	MSKCC	GRCh37	7	81392143	81392143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	57	369	0	ENST00000222390.5:c.134C>T	p.Ser45Leu	p.S45L	ENST00000222390	NM_000601.4	45	tCa/tTa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981407	70981407	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	34	534	0	ENST00000276594.2:c.689del	p.Pro230GlnfsTer64	p.P230Qfs*64	ENST00000276594	NM_024504.3	230	cCa/ca																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156686	20156686	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	43	360	0	ENST00000379607.5:c.71G>C	p.Arg24Thr	p.R24T	ENST00000379607	NM_001412.3	24	aGa/aCa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411333	63411333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	75	671	0	ENST00000330258.3:c.1834G>A	p.Glu612Lys	p.E612K	ENST00000330258	NM_152424.3	612	Gag/Aag																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117695772	117695772	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	36	268	1	ENST00000369458.3:c.665C>A	p.Thr222Lys	p.T222K	ENST00000369458	NM_024626.3	222	aCa/aAa																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117695923	117695923	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	65	445	1	ENST00000369458.3:c.514del	p.Arg172AspfsTer30	p.R172Dfs*30	ENST00000369458	NM_024626.3	172	Cga/ga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16242680	16242680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	71	500	0	ENST00000375759.3:c.1301C>T	p.Pro434Leu	p.P434L	ENST00000375759	NM_015001.2	434	cCc/cTc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175826	176175826	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	30	454	0	ENST00000367669.3:c.289G>T	p.Ala97Ser	p.A97S	ENST00000367669	NM_022457.5	97	Gcc/Tcc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246490553	246490554	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	53	443	0	ENST00000388985.4:c.480_481delinsAT	p.Asp161Tyr	p.D161Y	ENST00000388985		160	caGGat/caATat																																																																															
MPL	4352	MSKCC	GRCh37	1	43803847	43803847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	43	478	0	ENST00000372470.3:c.157G>A	p.Asp53Asn	p.D53N	ENST00000372470	NM_005373.2	53	Gat/Aat																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521482	46521482	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	47	375	0	ENST00000262741.5:c.926G>T	p.Arg309Leu	p.R309L	ENST00000262741	NM_003629.3	309	cGa/cTa																																																																															
RET	5979	MSKCC	GRCh37	10	43606844	43606844	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	68	763	0	ENST00000355710.3:c.1453G>T	p.Val485Leu	p.V485L	ENST00000355710	NM_020975.4	485	Gtg/Ttg																																																																															
RET	5979	MSKCC	GRCh37	10	43606878	43606879	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGG			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	63	705	0	ENST00000355710.3:c.1487_1488insAGG	p.Ala496_Gln497insGly	p.A496_Q497insG	ENST00000355710	NM_020975.4	496	gcc/gcAGGc																																																																															
TET1	80312	MSKCC	GRCh37	10	70451287	70451287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	49	643	0	ENST00000373644.4:c.6127C>T	p.Arg2043Cys	p.R2043C	ENST00000373644	NM_030625.2	2043	Cgc/Tgc																																																																															
CTR9	9646	MSKCC	GRCh37	11	10791821	10791821	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	59	464	0	ENST00000361367.2:c.2174G>C	p.Arg725Pro	p.R725P	ENST00000361367	NM_014633.3	725	cGg/cCg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64126760	64126760	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	26	440	0	ENST00000334205.4:c.53A>G	p.Glu18Gly	p.E18G	ENST00000334205	NM_003942.2	18	gAa/gGa																																																																															
PAK1	5058	MSKCC	GRCh37	11	77090375	77090375	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	107	455	0	ENST00000356341.3:c.350A>T	p.Gln117Leu	p.Q117L	ENST00000356341	NM_002576.4	117	cAg/cTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112465	115112465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	35	481	0	ENST00000257566.3:c.1275C>A	p.Ser425Arg	p.S425R	ENST00000257566	NM_016569.3	425	agC/agA																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022891	12022891	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	53	703	0	ENST00000396373.4:c.997G>C	p.Gly333Arg	p.G333R	ENST00000396373	NM_001987.4	333	Ggg/Cgg																																																																															
CCND2	894	MSKCC	GRCh37	12	4409050	4409050	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	49	444	1	ENST00000261254.3:c.745C>T	p.Gln249Ter	p.Q249*	ENST00000261254	NM_001759.3	249	Cag/Tag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245645	46245645	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	83	575	0	ENST00000334344.6:c.3739G>T	p.Glu1247Ter	p.E1247*	ENST00000334344	NM_152641.2	1247	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435048	49435048	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	104	534	0	ENST00000301067.7:c.6505G>T	p.Ala2169Ser	p.A2169S	ENST00000301067	NM_003482.3	2169	Gcc/Tcc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860152	57860152	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	39	388	0	ENST00000228682.2:c.892G>T	p.Glu298Ter	p.E298*	ENST00000228682	NM_005269.2	298	Gag/Tag																																																																															
CDK4	1019	MSKCC	GRCh37	12	58144798	58144798	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	54	701	0	ENST00000257904.6:c.430G>C	p.Glu144Gln	p.E144Q	ENST00000257904	NM_000075.3	144	Gag/Cag																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145042	58145042	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	69	546	0	ENST00000257904.6:c.302G>C	p.Arg101Thr	p.R101T	ENST00000257904	NM_000075.3	101	aGg/aCg																																																																															
RB1	5925	MSKCC	GRCh37	13	48878103	48878103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	36	531	0	ENST00000267163.4:c.55G>C	p.Glu19Gln	p.E19Q	ENST00000267163	NM_000321.2	19	Gaa/Caa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066940	30066940	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	39	372	0	ENST00000331968.5:c.2191G>T	p.Ala731Ser	p.A731S	ENST00000331968	NM_002742.2	731	Gcc/Tcc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061730	38061730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	35	556	0	ENST00000250448.2:c.259G>T	p.Gly87Trp	p.G87W	ENST00000250448	NM_004496.3	87	Ggg/Tgg																																																																															
MGA	23269	MSKCC	GRCh37	15	42042035	42042035	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	129	536	0	ENST00000219905.7:c.6231del	p.Glu2079LysfsTer23	p.E2079Kfs*23	ENST00000219905	NM_001164273.1	2077	tCc/tc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420329	88420329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	43	461	0	ENST00000360948.2:c.2357G>T	p.Gly786Val	p.G786V	ENST00000360948	NM_001012338.2	786	gGt/gTt																																																																															
BLM	641	MSKCC	GRCh37	15	91310245	91310245	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	17	304	0	ENST00000355112.3:c.2299C>A	p.Pro767Thr	p.P767T	ENST00000355112	NM_000057.2	767	Cca/Aca																																																																															
TSC2	7249	MSKCC	GRCh37	16	2125508	2125823	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACAGAGCCAGACTCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAGAGGTGCGGAAGCCTTTCCTCACGGATCACACAAATGGTAGGCGACAGCTCGAATTGGCCCAGAAGCTGTGGTTGGCTGGCCATGGGACCGAGAGTTGAGGCCAGGGTCGGGAAAGCCACGTCCGTGTGGCCGTGGCCTTCTCTCCTCTGCAGCACCCCATCGCTGCCGTGGGCAGAGCAGCCGTGTTGGCCTTCAGAGGCGCTGCACGGGACCCCGGCTCCCCTGACCACCCTCTCCATTACCGCAGCTCTGGCCAGGCTGCCGCACCTCT	ACAGAGCCAGACTCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAGAGGTGCGGAAGCCTTTCCTCACGGATCACACAAATGGTAGGCGACAGCTCGAATTGGCCCAGAAGCTGTGGTTGGCTGGCCATGGGACCGAGAGTTGAGGCCAGGGTCGGGAAAGCCACGTCCGTGTGGCCGTGGCCTTCTCTCCTCTGCAGCACCCCATCGCTGCCGTGGGCAGAGCAGCCGTGTTGGCCTTCAGAGGCGCTGCACGGGACCCCGGCTCCCCTGACCACCCTCTCCATTACCGCAGCTCTGGCCAGGCTGCCGCACCTCT	-			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			3	26	12	0	ENST00000219476.3:c.2546-288_2573del		p.X849_splice	ENST00000219476	NM_000548.3	849																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9923297	9923297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	39	408	0	ENST00000330684.3:c.1990G>T	p.Gly664Cys	p.G664C	ENST00000330684	NM_001134407.1	664	Ggc/Tgc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17118568	17118568	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	61	527	0	ENST00000285071.4:c.1363G>T	p.Glu455Ter	p.E455*	ENST00000285071	NM_144997.5	455	Gag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29654857	29654857	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	44	420	0	ENST00000358273.4:c.5609G>T	p.Arg1870Leu	p.R1870L	ENST00000358273	NM_001042492.2	1870	cGg/cTg																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690497	33690497	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	114	514	0	ENST00000308377.4:c.330G>C	p.Trp110Cys	p.W110C	ENST00000308377	NM_152270.3	110	tgG/tgC																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866422	37866422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	67	456	0	ENST00000269571.5:c.727G>T	p.Gly243Cys	p.G243C	ENST00000269571		243	Ggc/Tgc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40460194	40460194	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	45	440	0	ENST00000345506.4:c.1907-2A>T		p.X636_splice	ENST00000345506	NM_003152.3	636																																																																																
SPOP	8405	MSKCC	GRCh37	17	47684668	47684668	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	41	421	0	ENST00000347630.2:c.781G>T	p.Gly261Trp	p.G261W	ENST00000347630	NM_001007230.1	261	Ggg/Tgg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39623737	39623737	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	29	328	0	ENST00000262039.4:c.2144A>G	p.Asn715Ser	p.N715S	ENST00000262039	NM_002647.2	715	aAt/aGt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302423	15302423	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	60	595	0	ENST00000263388.2:c.848A>G	p.Asn283Ser	p.N283S	ENST00000263388	NM_000435.2	283	aAc/aGc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30303625	30303625	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	39	513	0	ENST00000262643.3:c.53A>G	p.Glu18Gly	p.E18G	ENST00000262643	NM_001238.2	18	gAg/gGg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214897	36214897	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754957565		P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	36	473	0	ENST00000222270.7:c.3323C>T	p.Pro1108Leu	p.P1108L	ENST00000222270	NM_014727.1	1108	cCc/cTc																																																																															
AKT2	208	MSKCC	GRCh37	19	40741031	40741031	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	322	576	0	ENST00000392038.2:c.1287G>C	p.Gln429His	p.Q429H	ENST00000392038	NM_001626.4	429	caG/caC																																																																															
AXL	558	MSKCC	GRCh37	19	41725334	41725334	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	31	434	0	ENST00000301178.4:c.37C>A	p.Leu13Met	p.L13M	ENST00000301178	NM_021913.4	13	Ctg/Atg																																																																															
AXL	558	MSKCC	GRCh37	19	41744445	41744445	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	35	433	0	ENST00000301178.4:c.1065G>T	p.Glu355Asp	p.E355D	ENST00000301178	NM_021913.4	355	gaG/gaT																																																																															
CIC	23152	MSKCC	GRCh37	19	42794851	42794851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	40	513	0	ENST00000575354.2:c.1931G>A	p.Gly644Glu	p.G644E	ENST00000575354	NM_015125.3	644	gGa/gAa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902244	50902244	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	41	552	0	ENST00000440232.2:c.136G>T	p.Ala46Ser	p.A46S	ENST00000440232	NM_002691.3	46	Gca/Tca																																																																															
POLD1	5424	MSKCC	GRCh37	19	50917084	50917084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	57	541	0	ENST00000440232.2:c.2336C>T	p.Ala779Val	p.A779V	ENST00000440232	NM_002691.3	779	gCg/gTg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198274575	198274575	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	29	468	0	ENST00000335508.6:c.823G>T	p.Gly275Cys	p.G275C	ENST00000335508	NM_012433.2	275	Ggc/Tgc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662989	227662989	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	33	497	0	ENST00000305123.5:c.466C>G	p.Pro156Ala	p.P156A	ENST00000305123	NM_005544.2	156	Cca/Gca																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25991658	25991658	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	37	375	0	ENST00000435504.4:c.584C>G	p.Ser195Ter	p.S195*	ENST00000435504		195	tCa/tGa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47705659	47705659	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	60	384	0	ENST00000233146.2:c.2458+1G>T		p.X820_splice	ENST00000233146	NM_000251.2	820																																																																																
XPO1	7514	MSKCC	GRCh37	2	61720169	61720169	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	49	366	0	ENST00000401558.2:c.1265G>C	p.Ser422Thr	p.S422T	ENST00000401558	NM_003400.3	422	aGt/aCt																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30309730	30309730	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	63	616	0	ENST00000307677.4:c.292G>C	p.Glu98Gln	p.E98Q	ENST00000307677	NM_138578.1	98	Gaa/Caa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31020753	31020753	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	35	413	0	ENST00000375687.4:c.1050G>T	p.Trp350Cys	p.W350C	ENST00000375687	NM_015338.5	350	tgG/tgT																																																																															
TOP1	7150	MSKCC	GRCh37	20	39709807	39709807	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	28	345	0	ENST00000361337.2:c.434C>T	p.Ala145Val	p.A145V	ENST00000361337	NM_003286.2	145	gCt/gTt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264386	46264386	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	106	533	0	ENST00000371998.3:c.1433A>G	p.Gln478Arg	p.Q478R	ENST00000371998		478	cAg/cGg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57478629	57478629	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	45	504	0	ENST00000371085.3:c.301G>T	p.Glu101Ter	p.E101*	ENST00000371085	NM_000516.4	101	Gag/Tag																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62292745	62292745	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	45	512	0	ENST00000482936.1:c.197G>T	p.Gly66Val	p.G66V	ENST00000482936		66	gGc/gTc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164823	36164823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	54	698	0	ENST00000300305.3:c.1052G>T	p.Gly351Val	p.G351V	ENST00000300305		351	gGc/gTc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36253012	36253012	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	68	441	0	ENST00000300305.3:c.352-2A>T		p.X118_splice	ENST00000300305		118																																																																																
ICOSLG	23308	MSKCC	GRCh37	21	45655368	45655368	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	81	616	0	ENST00000407780.3:c.484A>T	p.Asn162Tyr	p.N162Y	ENST00000407780	NM_001283052.1	162	Aac/Tac																																																																															
RAF1	5894	MSKCC	GRCh37	3	12650287	12650287	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	35	463	0	ENST00000251849.4:c.559T>C	p.Trp187Arg	p.W187R	ENST00000251849	NM_002880.3	187	Tgg/Cgg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968179	134968179	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	34	512	0	ENST00000398015.3:c.2692C>A	p.Pro898Thr	p.P898T	ENST00000398015	NM_004441.4	898	Cct/Act																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185169139	185169139	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	43	409	0	ENST00000265026.3:c.1234G>T	p.Ala412Ser	p.A412S	ENST00000265026	NM_004721.4	412	Gca/Tca																																																																															
MITF	4286	MSKCC	GRCh37	3	69988289	69988289	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	98	444	0	ENST00000352241.4:c.623A>C	p.Glu208Ala	p.E208A	ENST00000352241	NM_198159.2	208	gAg/gCg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542435	187542435	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	45	590	0	ENST00000441802.2:c.5305G>T	p.Glu1769Ter	p.E1769*	ENST00000441802	NM_005245.3	1769	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112176335	112176335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	44	437	0	ENST00000257430.4:c.5044G>T	p.Gly1682Cys	p.G1682C	ENST00000257430	NM_000038.5	1682	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112176517	112176550	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGAAAAAGATAATGGACCAGGTCCAGCAAGCA	TGTGAAAAAGATAATGGACCAGGTCCAGCAAGCA	-			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	28	470	0	ENST00000257430.4:c.5227_5260del	p.Val1743LeufsTer12	p.V1743Lfs*12	ENST00000257430	NM_000038.5	1742	cgTGTGAAAAAGATAATGGACCAGGTCCAGCAAGCA/cg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520535	176520535	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	53	564	0	ENST00000292408.4:c.1380G>T	p.Trp460Cys	p.W460C	ENST00000292408	NM_213647.1	460	tgG/tgT																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524298	176524298	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs141240325		P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	101	483	0	ENST00000292408.4:c.2159G>T	p.Gly720Val	p.G720V	ENST00000292408	NM_213647.1	720	gGg/gTg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871252	35871252	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	36	393	0	ENST00000303115.3:c.474G>T	p.Lys158Asn	p.K158N	ENST00000303115	NM_002185.3	158	aaG/aaT																																																																															
TRIP13	9319	MSKCC	GRCh37	5	907244	907244	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	36	420	0	ENST00000166345.3:c.609-1G>T		p.X203_splice	ENST00000166345	NM_004237.3	203																																																																																
TNFAIP3	7128	MSKCC	GRCh37	6	138200390	138200390	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	185	618	0	ENST00000237289.4:c.1808G>T	p.Gly603Val	p.G603V	ENST00000237289	NM_001270507.1	603	gGg/gTg																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045789	26045789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			839	60	756	0	ENST00000540144.1:c.151G>C	p.Glu51Gln	p.E51Q	ENST00000540144	NM_003531.2	51	Gaa/Caa																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045952	26045952	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	126	645	0	ENST00000540144.1:c.314T>A	p.Phe105Tyr	p.F105Y	ENST00000540144	NM_003531.2	105	tTc/tAc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169006	32169006	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	128	579	0	ENST00000375023.3:c.4027C>A	p.Pro1343Thr	p.P1343T	ENST00000375023	NM_004557.3	1343	Cct/Act																																																																															
IRF4	3662	MSKCC	GRCh37	6	394882	394882	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	321	465	0	ENST00000380956.4:c.278G>C	p.Trp93Ser	p.W93S	ENST00000380956	NM_001195286.1	93	tGg/tCg																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43746218	43746218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	38	489	0	ENST00000523873.1:c.337C>T	p.Gln113Ter	p.Q113*	ENST00000523873		113	Caa/Taa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509461	106509461	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	86	541	0	ENST00000359195.3:c.1455G>C	p.Trp485Cys	p.W485C	ENST00000359195	NM_002649.2	485	tgG/tgC																																																																															
MET	4233	MSKCC	GRCh37	7	116397565	116397565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	52	402	0	ENST00000397752.3:c.1937C>T	p.Thr646Ile	p.T646I	ENST00000397752	NM_000245.2	646	aCa/aTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151848006	151848006	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	22	350	0	ENST00000262189.6:c.12753A>T	p.Gln4251His	p.Q4251H	ENST00000262189	NM_170606.2	4251	caA/caT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152027798	152027798	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	44	398	0	ENST00000262189.6:c.277G>T	p.Asp93Tyr	p.D93Y	ENST00000262189	NM_170606.2	93	Gat/Tat																																																																															
HGF	3082	MSKCC	GRCh37	7	81392103	81392103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	40	417	0	ENST00000222390.5:c.174G>T	p.Lys58Asn	p.K58N	ENST00000222390	NM_000601.4	58	aaG/aaT																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742879	145742884	+	missense_variant	Missense_Mutation	ONP	TTCCCG	TTCCCG	CTCCCC			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	32	354	0	ENST00000428558.2:c.127_132delinsGGGGAG	p.Arg43Gly	p.R43G	ENST00000428558	NM_004260.3	43	CGGGAA/GGGGAG																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372010	55372010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	77	501	0	ENST00000297316.4:c.700C>A	p.Pro234Thr	p.P234T	ENST00000297316	NM_022454.3	234	Ccg/Acg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70967558	70967558	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	32	399	0	ENST00000276594.2:c.1465T>A	p.Tyr489Asn	p.Y489N	ENST00000276594	NM_024504.3	489	Tac/Aac																																																																															
ABL1	25	MSKCC	GRCh37	9	133759465	133759465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	59	540	0	ENST00000318560.5:c.1788G>T	p.Lys596Asn	p.K596N	ENST00000318560	NM_005157.4	596	aaG/aaT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486136	8486136	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	40	541	0	ENST00000356435.5:c.2681G>C	p.Arg894Thr	p.R894T	ENST00000356435		894	aGg/aCg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500801	8500801	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	95	532	0	ENST00000356435.5:c.2081G>T	p.Gly694Val	p.G694V	ENST00000356435		694	gGc/gTc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342676	87342676	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	49	563	0	ENST00000277120.3:c.961G>C	p.Gly321Arg	p.G321R	ENST00000277120		321	Ggg/Cgg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123210253	123210255	+	frameshift_variant	Frame_Shift_Del	DEL	TGT	TGT	AG			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	52	436	0	ENST00000218089.9:c.2605_2607delinsAG	p.Cys869ArgfsTer3	p.C869Rfs*3	ENST00000218089	NM_001042749.1	869	TGT/AG																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15826377	15826377	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	22	282	0	ENST00000307771.7:c.421G>C	p.Asp141His	p.D141H	ENST00000307771	NM_005089.3	141	Gat/Cat																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931874	39931874	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	31	497	0	ENST00000378444.4:c.2725G>C	p.Gly909Arg	p.G909R	ENST00000378444	NM_001123385.1	909	Ggc/Cgc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933801	39933801	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	130	648	0	ENST00000378444.4:c.798G>T	p.Arg266Ser	p.R266S	ENST00000378444	NM_001123385.1	266	agG/agT																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44732816	44732816	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	53	356	1	ENST00000377967.4:c.19T>C	p.Ser7Pro	p.S7P	ENST00000377967	NM_021140.2	7	Tcg/Ccg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410865	63410865	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	36	526	0	ENST00000330258.3:c.2302A>T	p.Ser768Cys	p.S768C	ENST00000330258	NM_152424.3	768	Agt/Tgt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410951	63410952	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	79	601	2	ENST00000330258.3:c.2215_2216delinsAT	p.Gly739Ile	p.G739I	ENST00000330258	NM_152424.3	739	GGa/ATa																																																																															
MED12	9968	MSKCC	GRCh37	X	70348252	70348252	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	96	591	0	ENST00000374080.3:c.3316G>T	p.Gly1106Cys	p.G1106C	ENST00000374080		1106	Ggc/Tgc																																																																															
MED12	9968	MSKCC	GRCh37	X	70348991	70348991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	86	525	0	ENST00000374080.3:c.3503G>T	p.Gly1168Val	p.G1168V	ENST00000374080		1168	gGg/gTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76812987	76812987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	46	450	0	ENST00000373344.5:c.6634C>A	p.Pro2212Thr	p.P2212T	ENST00000373344	NM_000489.3	2212	Cca/Aca																																																																															
ATRX	546	MSKCC	GRCh37	X	76874407	76874407	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	44	308	0	ENST00000373344.5:c.5315C>A	p.Ser1772Tyr	p.S1772Y	ENST00000373344	NM_000489.3	1772	tCc/tAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76912112	76912112	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0086516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	62	333	0	ENST00000373344.5:c.4152T>A	p.Phe1384Leu	p.F1384L	ENST00000373344	NM_000489.3	1384	ttT/ttA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0086520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	390	463	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0086520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	120	284	2	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175487	112175487	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	88	480	0	ENST00000257430.4:c.4196del	p.Arg1399LeufsTer16	p.R1399Lfs*16	ENST00000257430	NM_000038.5	1399	cGt/ct																																																																															
MTOR	2475	MSKCC	GRCh37	1	11177113	11177113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	100	366	0	ENST00000361445.4:c.6964C>T	p.Arg2322Cys	p.R2322C	ENST00000361445	NM_004958.3	2322	Cgt/Tgt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212576794	212576794	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	103	337	0	ENST00000342788.4:c.1105C>G	p.Leu369Val	p.L369V	ENST00000342788	NM_005235.2	369	Cta/Gta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0086521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	27	395	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0086521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	83	459	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0086521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	49	516	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0086521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	28	336	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120181	70120182	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0086521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	89	544	0	ENST00000245479.2:c.1185_1186dup	p.His396ArgfsTer8	p.H396Rfs*8	ENST00000245479	NM_000346.3	395	acg/aCGcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0086521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	25	273	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0086522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	78	290	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0086522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	92	408	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0086522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	24	236	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0086522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	53	382	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0086522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	89	265	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472586	88472586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	59	484	0	ENST00000360948.2:c.1969C>T	p.Leu657Phe	p.L657F	ENST00000360948	NM_001012338.2	657	Ctc/Ttc																																																																															
APC	324	MSKCC	GRCh37	5	112175599	112175600	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0086522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	92	547	0	ENST00000257430.4:c.4312dup	p.Thr1438AsnfsTer17	p.T1438Nfs*17	ENST00000257430	NM_000038.5	1436	-/A																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0085656-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			530	165	356	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0086024-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	17	247	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0086387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	43	283	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163075	47163075	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0086387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	81	450	0	ENST00000409792.3:c.3051T>G	p.Tyr1017Ter	p.Y1017*	ENST00000409792	NM_014159.6	1017	taT/taG																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112256	115112256	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	27	378	0	ENST00000257566.3:c.1484A>G	p.Gln495Arg	p.Q495R	ENST00000257566	NM_016569.3	495	cAg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578259	7578259	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0086388-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	193	604	0	ENST00000269305.4:c.590T>G	p.Val197Gly	p.V197G	ENST00000269305	NM_001126112.2	197	gTg/gGg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436117	56436118	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0086388-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	147	550	1	ENST00000407977.2:c.1019_1020del	p.His340ProfsTer102	p.H340Pfs*102	ENST00000407977		340	cAC/c																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038780	47038780	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086388-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	113	209	0	ENST00000329236.7:c.556C>G	p.Arg186Gly	p.R186G	ENST00000329236	NM_001204466.1	186	Cgg/Ggg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0086391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	65	364	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
SDHB	6390	MSKCC	GRCh37	1	17350532	17350532	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	229	350	0	ENST00000375499.3:c.578G>C	p.Ser193Thr	p.S193T	ENST00000375499	NM_003000.2	193	aGc/aCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0086391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	72	320	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983028	201983029	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0086391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	90	459	0	ENST00000359651.3:c.878dup	p.Met293IlefsTer8	p.M293Ifs*8	ENST00000359651		293	atg/aTtg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653780	89653781	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0086396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	48	267	0	ENST00000371953.3:c.80-1_80del		p.X27_splice	ENST00000371953	NM_000314.4	27																																																																																
SETD2	29072	MSKCC	GRCh37	3	47158246	47158246	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0086396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	56	232	0	ENST00000409792.3:c.4455-2A>T		p.X1485_splice	ENST00000409792	NM_014159.6	1485																																																																																
SETD2	29072	MSKCC	GRCh37	3	47155365	47155365	+	splice_donor_variant	Splice_Site	SNP	C	C	G	rs1485723437		P-0086396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	60	292	0	ENST00000409792.3:c.4715+1G>C		p.X1572_splice	ENST00000409792	NM_014159.6	1572																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0086396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	49	260	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630036	67630036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	43	346	0	ENST00000272342.5:c.472G>A	p.Gly158Ser	p.G158S	ENST00000272342	NM_019002.3	158	Ggt/Agt																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230561351	230561351	+	5_prime_UTR_variant	5'UTR	SNP	A	A	T			P-0086396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	85	576	0	ENST00000391860.1:c.-22T>A		p.*8*	ENST00000391860	NM_001258311.1																																																																																	
BTK	695	MSKCC	GRCh37	X	100608187	100608187	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	79	334	0	ENST00000308731.7:c.1903C>A	p.His635Asn	p.H635N	ENST00000308731	NM_000061.2	635	Cat/Aat																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246106	46246106	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0086396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	89	406	0	ENST00000334344.6:c.4200del	p.Asp1400GlufsTer13	p.D1400Efs*13	ENST00000334344	NM_152641.2	1400	gaT/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0086397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	275	506	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KDR	3791	MSKCC	GRCh37	4	55968597	55968597	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34038364		P-0086397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	94	385	1	ENST00000263923.4:c.2066C>T	p.Thr689Met	p.T689M	ENST00000263923	NM_002253.2	689	aCg/aTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405868	157405868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	171	514	0	ENST00000346085.5:c.2110G>A	p.Gly704Arg	p.G704R	ENST00000346085	NM_020732.3	704	Ggg/Agg																																																																															
APC	324	MSKCC	GRCh37	5	112170762	112170765	+	frameshift_variant	Frame_Shift_Del	DEL	CTTA	CTTA	-			P-0086397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	67	369	0	ENST00000257430.4:c.1863_1866del	p.Tyr622GlyfsTer7	p.Y622Gfs*7	ENST00000257430	NM_000038.5	620	CTTAct/ct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0086397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	121	269	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112102913	112102913	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	91	304	0	ENST00000257430.4:c.248C>A	p.Pro83His	p.P83H	ENST00000257430	NM_000038.5	83	cCt/cAt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230761	46230761	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	87	363	0	ENST00000334344.6:c.1010A>G	p.Asn337Ser	p.N337S	ENST00000334344	NM_152641.2	337	aAt/aGt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206837	162206837	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs72480422		P-0086397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	144	448	0	ENST00000366898.1:c.838G>A	p.Asp280Asn	p.D280N	ENST00000366898	NM_004562.2	280	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0086398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	74	428	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717661	89717661	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0086398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	46	412	0	ENST00000371953.3:c.686C>G	p.Ser229Ter	p.S229*	ENST00000371953	NM_000314.4	229	tCa/tGa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412345	139412345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	61	509	0	ENST00000277541.6:c.1300G>T	p.Gly434Cys	p.G434C	ENST00000277541	NM_017617.3	434	Ggc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420547	49420547	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0086398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			715	98	501	0	ENST00000301067.7:c.15202G>T	p.Glu5068Ter	p.E5068*	ENST00000301067	NM_003482.3	5068	Gag/Tag																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627313	14627313	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			855	65	648	0	ENST00000254322.2:c.757G>C	p.Asp253His	p.D253H	ENST00000254322	NM_006145.1	253	Gat/Cat																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627326	14627326	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			797	75	630	0	ENST00000254322.2:c.744G>T	p.Lys248Asn	p.K248N	ENST00000254322	NM_006145.1	248	aaG/aaT																																																																															
JAK2	3717	MSKCC	GRCh37	9	5055780	5055780	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	52	319	0	ENST00000381652.3:c.1048A>G	p.Lys350Glu	p.K350E	ENST00000381652	NM_004972.3	350	Aaa/Gaa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100053	30100053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	82	489	0	ENST00000331968.5:c.1567G>A	p.Gly523Ser	p.G523S	ENST00000331968	NM_002742.2	523	Ggc/Agc																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5557620	5557620	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0086398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	118	423	0	ENST00000397747.3:c.634C>G	p.Gln212Glu	p.Q212E	ENST00000397747	NM_025239.3	212	Cag/Gag																																																																															
RAD52	5893	MSKCC	GRCh37	12	1036345	1036345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	77	374	0	ENST00000358495.3:c.433G>A	p.Glu145Lys	p.E145K	ENST00000358495	NM_134424.2	145	Gag/Aag																																																																															
HGF	3082	MSKCC	GRCh37	7	81335742	81335742	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0086398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	53	341	0	ENST00000222390.5:c.1618G>T	p.Asp540Tyr	p.D540Y	ENST00000222390	NM_000601.4	540	Gac/Tac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120669	115120669	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0086402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	225	420	0	ENST00000257566.3:c.337T>G	p.Trp113Gly	p.W113G	ENST00000257566	NM_016569.3	113	Tgg/Ggg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060779	38060810	+	frameshift_variant	Frame_Shift_Del	DEL	TGTTGATGGAGAACGGGTGGTTGAAGGAGTAG	TGTTGATGGAGAACGGGTGGTTGAAGGAGTAG	-			P-0086402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	231	517	0	ENST00000250448.2:c.1179_1210del	p.His393GlnfsTer11	p.H393Qfs*11	ENST00000250448	NM_004496.3	393	caCTACTCCTTCAACCACCCGTTCTCCATCAACAac/caac																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2491327	2491327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	150	394	0	ENST00000355716.4:c.370G>A	p.Gly124Ser	p.G124S	ENST00000355716	NM_003820.2	124	Ggc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0086409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	335	298	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716214	52716214	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	101	453	0	ENST00000322088.6:c.658G>T	p.Val220Leu	p.V220L	ENST00000322088	NM_014225.5	220	Gtg/Ttg																																																																															
ATM	472	MSKCC	GRCh37	11	108196850	108196850	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0086412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	30	294	0	ENST00000278616.4:c.6873G>A	p.Trp2291Ter	p.W2291*	ENST00000278616	NM_000051.3	2291	tgG/tgA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0028151-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			552	41	421	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057520007		P-0085959-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			265	251	570	0	ENST00000269305.4:c.614A>C	p.Tyr205Ser	p.Y205S	ENST00000269305	NM_001126112.2	205	tAt/tCt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65349016	65349016	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085959-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			295	175	471	0	ENST00000342505.4:c.149T>C	p.Leu50Pro	p.L50P	ENST00000342505	NM_002227.2	50	cTg/cCg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15300150	15300150	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1392159114		P-0085959-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			798	41	0	0	ENST00000263388.2:c.1126A>G	p.Ile376Val	p.I376V	ENST00000263388	NM_000435.2	376	Att/Gtt																																																																															
EZH1	2145	MSKCC	GRCh37	17	40879736	40879746	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGGGTTTTT	TCTGGGTTTTT	-			P-0085959-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			258	210	385	0	ENST00000428826.2:c.153_163del	p.Glu51AspfsTer4	p.E51Dfs*4	ENST00000428826		51	gaAAAAACCCAGAtc/gatc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662715	117662715	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085959-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			459	94	422	0	ENST00000368508.3:c.4750C>G	p.Pro1584Ala	p.P1584A	ENST00000368508	NM_002944.2	1584	Cca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0082172-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			120	50	289	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	TG			P-0082172-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			128	85	167	0	ENST00000256078.4:c.34_35delinsCA	p.Gly12His	p.G12H	ENST00000256078	NM_033360.2	12	GGt/CAt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137326029	137326029	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082172-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			186	29	284	0	ENST00000481739.1:c.1217A>G	p.His406Arg	p.H406R	ENST00000481739	NM_002957.4	406	cAc/cGc																																																																															
CCND2	894	MSKCC	GRCh37	12	4385218	4385227	+	frameshift_variant	Frame_Shift_Del	DEL	GAATTACCTG	GAATTACCTG	-			P-0082172-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			164	55	249	0	ENST00000261254.3:c.245_254del	p.Asn82ThrfsTer34	p.N82Tfs*34	ENST00000261254	NM_001759.3	81	atGAATTACCTG/at																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30648416	30648416	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0082172-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			155	39	257	0	ENST00000359013.4:c.41T>G	p.Ile14Ser	p.I14S	ENST00000359013	NM_001024847.2	14	aTc/aGc																																																																															
PARP1	142	MSKCC	GRCh37	1	226568861	226568861	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082172-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			178	57	257	0	ENST00000366794.5:c.1208G>C	p.Arg403Pro	p.R403P	ENST00000366794	NM_001618.3	403	cGg/cCg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144805	11144819	+	inframe_deletion	In_Frame_Del	DEL	GACGAGGTGCCCGAC	GACGAGGTGCCCGAC	-			P-0082172-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			180	42	284	0	ENST00000344626.4:c.3886_3900del	p.Val1296_Glu1300del	p.V1296_E1300del	ENST00000344626	NM_003072.3	1294	GACGAGGTGCCCGAC/-																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158411	26158411	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1050932839		P-0082172-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			207	71	261	0	ENST00000289316.2:c.14C>T	p.Thr5Ile	p.T5I	ENST00000289316	NM_138720.2	5	aCc/aTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0084869-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			220	70	202	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MED12	9968	MSKCC	GRCh37	X	70356076	70356519	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGTCTTCTGTTTTCTAAGTCCCAACAGCTTATTGTTTTTCATTTTCTGGAGCAGGGTCTACAGGTTTCCACCAAACAGAAGATCTCGCCCTGGGATCTTTTTGAGGGGTTGAAGCCGTCAGCACCACTCTCTTGGGGCTGGTTTGGAACAGTCCGAGTGGACCGGCGAGTGGCTCGAGGAGAGGAGCAGCAGCGGTTGCTGCTCTACCACACACACCTGAGGCCCCGGCCCCGCGCCTATTACCTGGAGCCACTGCCACTGCCCCCAGAAGATGAGGAGCCGCCTGCTCCTACCCTGCTAGAGCCTGAGAAAAAGGCTCCAGAGCCCCCCAAAACTGACAAACCGGGGGCTGCTCCACCCAGTACTGAGGAACGCAAGAAGAAGTCCACCAAGGGCAAGAAACGCAGCCAGCCAGCTACCAAGACAGAGGTGAGCGCCTCCCC	CAGTCTTCTGTTTTCTAAGTCCCAACAGCTTATTGTTTTTCATTTTCTGGAGCAGGGTCTACAGGTTTCCACCAAACAGAAGATCTCGCCCTGGGATCTTTTTGAGGGGTTGAAGCCGTCAGCACCACTCTCTTGGGGCTGGTTTGGAACAGTCCGAGTGGACCGGCGAGTGGCTCGAGGAGAGGAGCAGCAGCGGTTGCTGCTCTACCACACACACCTGAGGCCCCGGCCCCGCGCCTATTACCTGGAGCCACTGCCACTGCCCCCAGAAGATGAGGAGCCGCCTGCTCCTACCCTGCTAGAGCCTGAGAAAAAGGCTCCAGAGCCCCCCAAAACTGACAAACCGGGGGCTGCTCCACCCAGTACTGAGGAACGCAAGAAGAAGTCCACCAAGGGCAAGAAACGCAGCCAGCCAGCTACCAAGACAGAGGTGAGCGCCTCCCC	-			P-0084869-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	26	184	0	ENST00000374080.3:c.5026-54_5400+15del		p.X1676_splice	ENST00000374080		1676																																																																																
GSK3B	2932	MSKCC	GRCh37	3	119720892	119720892	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0084869-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	39	236	0	ENST00000316626.5:c.282+1G>T		p.X94_splice	ENST00000316626		94																																																																																
CHEK1	1111	MSKCC	GRCh37	11	125513696	125513696	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084869-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			229	31	280	0	ENST00000428830.2:c.824G>C	p.Arg275Thr	p.R275T	ENST00000428830	NM_001114121.2	275	aGg/aCg																																																																															
SDHC	6391	MSKCC	GRCh37	1	161326580	161326580	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084869-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			158	21	104	0	ENST00000367975.2:c.355G>T	p.Ala119Ser	p.A119S	ENST00000367975	NM_003001.3	119	Gca/Tca																																																																															
CBL	867	MSKCC	GRCh37	11	119170448	119170448	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084869-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			384	52	348	0	ENST00000264033.4:c.2678G>C	p.Arg893Pro	p.R893P	ENST00000264033	NM_005188.3	893	cGg/cCg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39742509	39742617	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGACTGTCTCAAAAAAAAAAAAAAAAAAAACACAGAACGAAATTGTGTAAGGATCATGTCTCTTCCATTCATGCTCATCTTTTCTTTCTTTCCTGGGCAGCTTGCTCT	GAGACTGTCTCAAAAAAAAAAAAAAAAAAAACACAGAACGAAATTGTGTAAGGATCATGTCTCTTCCATTCATGCTCATCTTTTCTTTCTTTCCTGGGCAGCTTGCTCT	-			P-0084869-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			98	38	47	0	ENST00000361337.2:c.1453-97_1464del		p.X485_splice	ENST00000361337	NM_003286.2	485																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81904505	81904505	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0084869-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			179	16	228	0	ENST00000359376.3:c.613T>G	p.Phe205Val	p.F205V	ENST00000359376	NM_002661.3	205	Ttc/Gtc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044497	47044497	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0085365-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	36	346	0	ENST00000329236.7:c.1764del	p.Glu589LysfsTer37	p.E589Kfs*37	ENST00000329236	NM_001204466.1	587	cAa/ca																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123837	46123837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0085365-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			366	85	350	1	ENST00000334344.6:c.109del	p.Ile37SerfsTer21	p.I37Sfs*21	ENST00000334344	NM_152641.2	35	Aaa/aa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044973	47044973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0085365-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			429	52	420	0	ENST00000329236.7:c.2065C>T	p.Gln689Ter	p.Q689*	ENST00000329236	NM_001204466.1	689	Cag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47155483	47155483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085365-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			165	19	290	0	ENST00000409792.3:c.4598G>T	p.Cys1533Phe	p.C1533F	ENST00000409792	NM_014159.6	1533	tGt/tTt																																																																															
ABL1	25	MSKCC	GRCh37	9	133760132	133760132	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373527910		P-0085365-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	22	335	0	ENST00000318560.5:c.2455C>T	p.Arg819Trp	p.R819W	ENST00000318560	NM_005157.4	819	Cgg/Tgg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347891	347891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085365-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			429	80	497	0	ENST00000262320.3:c.1615G>T	p.Val539Phe	p.V539F	ENST00000262320	NM_003502.3	539	Gtc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0085365-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			114	30	273	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562446	95562446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085365-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			376	39	397	0	ENST00000343455.3:c.4811G>T	p.Cys1604Phe	p.C1604F	ENST00000343455	NM_177438.2	1604	tGc/tTc																																																																															
ATRX	546	MSKCC	GRCh37	X	76937566	76937566	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085365-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	44	327	0	ENST00000373344.5:c.3182C>A	p.Ser1061Tyr	p.S1061Y	ENST00000373344	NM_000489.3	1061	tCt/tAt																																																																															
GAB2	9846	MSKCC	GRCh37	11	77934590	77934590	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085365-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			442	48	359	0	ENST00000361507.4:c.1435A>G	p.Met479Val	p.M479V	ENST00000361507	NM_080491.2	479	Atg/Gtg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0085606-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			174	43	315	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0085606-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			356	71	366	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366871	40366871	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs753802769		P-0085606-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			199	13	390	0	ENST00000397332.2:c.326C>G	p.Ser109Trp	p.S109W	ENST00000397332	NM_001033082.2	109	tCg/tGg																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29195877	29195877	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085606-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	58	396	0	ENST00000240100.2:c.721C>G	p.Gln241Glu	p.Q241E	ENST00000240100	NM_001394.6	241	Cag/Gag																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21347190	21347190	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085606-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			187	46	346	0	ENST00000215739.8:c.1257C>A	p.Phe419Leu	p.F419L	ENST00000215739	NM_006767.3	419	ttC/ttA																																																																															
ATRX	546	MSKCC	GRCh37	X	76874279	76874279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085606-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			263	20	274	0	ENST00000373344.5:c.5443G>T	p.Val1815Phe	p.V1815F	ENST00000373344	NM_000489.3	1815	Gtt/Ttt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11298594	11298594	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085606-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			218	35	388	0	ENST00000361445.4:c.1867G>C	p.Ala623Pro	p.A623P	ENST00000361445	NM_004958.3	623	Gcc/Ccc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0085651-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			71	28	204	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573652	48573652	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085651-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			32	30	335	0	ENST00000342988.3:c.236A>T	p.Asp79Val	p.D79V	ENST00000342988	NM_005359.5	79	gAt/gTt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519961		P-0085651-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			219	66	317	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42795229	42795229	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	103	319	1	ENST00000575354.2:c.2309A>G	p.Tyr770Cys	p.Y770C	ENST00000575354	NM_015125.3	770	tAt/tGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115718	8115719	+	inframe_insertion	In_Frame_Ins	INS	-	-	TAT			P-0086252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	127	287	2	ENST00000346208.3:c.1065_1067dup	p.Thr355_Met356insIle	p.T355_M356insI	ENST00000346208		355	act/acTATt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853409	151853409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	91	288	0	ENST00000262189.6:c.11693C>T	p.Pro3898Leu	p.P3898L	ENST00000262189	NM_170606.2	3898	cCa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0086264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	160	386	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	82	366	0	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591116	67591120	+	frameshift_variant	Frame_Shift_Del	DEL	TTATC	TTATC	GAA			P-0086264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	197	289	0	ENST00000274335.5:c.1709_1713delinsGAA	p.Leu570ArgfsTer31	p.L570Rfs*31	ENST00000274335		570	cTTATC/cGAA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0086340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	60	252	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
ATM	472	MSKCC	GRCh37	11	108173675	108173675	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0086340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	64	268	0	ENST00000278616.4:c.5415G>A	p.Trp1805Ter	p.W1805*	ENST00000278616	NM_000051.3	1805	tgG/tgA																																																																															
ATM	472	MSKCC	GRCh37	11	108188116	108188116	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	56	243	0	ENST00000278616.4:c.6215G>T	p.Gly2072Val	p.G2072V	ENST00000278616	NM_000051.3	2072	gGa/gTa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069049	5069052	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-	rs759468230		P-0086340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	62	302	0	ENST00000381652.3:c.1356_1359del	p.Cys452Ter	p.C452*	ENST00000381652	NM_004972.3	452	TGTTtg/tg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2182151	2182151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	47	243	0	ENST00000349721.2:c.4370G>A	p.Arg1457His	p.R1457H	ENST00000349721	NM_003070.3	1457	cGt/cAt																																																																															
SESN1	27244	MSKCC	GRCh37	6	109311995	109311995	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0086340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	59	305	0	ENST00000436639.2:c.1277T>G	p.Leu426Arg	p.L426R	ENST00000436639	NM_014454.2	426	cTt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0086341-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	11	383	0	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																															
TP63	8626	MSKCC	GRCh37	3	189582020	189582020	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0086341-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	40	335	0	ENST00000264731.3:c.580-1G>A		p.X194_splice	ENST00000264731	NM_003722.4	194																																																																																
KDR	3791	MSKCC	GRCh37	4	55955560	55955560	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086341-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	24	300	0	ENST00000263923.4:c.3385G>T	p.Asp1129Tyr	p.D1129Y	ENST00000263923	NM_002253.2	1129	Gat/Tat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0081480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	36	447	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118704	115118706	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0081480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	38	433	0	ENST00000257566.3:c.635_637del	p.Asn212del	p.N212del	ENST00000257566	NM_016569.3	212	aACAtt/att																																																																															
CDH1	999	MSKCC	GRCh37	16	68845757	68845757	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587780784		P-0081480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	40	341	0	ENST00000261769.5:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000261769	NM_004360.3	335	Cga/Tga																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598357	28598357	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748874332		P-0081480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	24	485	0	ENST00000253063.3:c.329C>T	p.Ser110Phe	p.S110F	ENST00000253063	NM_031459.4	110	tCc/tTc																																																																															
CBFB	865	MSKCC	GRCh37	16	67100590	67100590	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0081480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	33	342	0	ENST00000412916.2:c.288T>A	p.Tyr96Ter	p.Y96*	ENST00000412916		96	taT/taA																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482843	67482843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086149-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	43	392	0	ENST00000327367.4:c.1247C>T	p.Ser416Phe	p.S416F	ENST00000327367	NM_005902.3	416	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0086149-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			346	108	353	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026165	48026165	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758432113		P-0086149-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			692	52	456	0	ENST00000234420.5:c.1043C>T	p.Ser348Phe	p.S348F	ENST00000234420	NM_000179.2	348	tCc/tTc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125367	47125367	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086149-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			499	63	474	0	ENST00000409792.3:c.5903C>A	p.Thr1968Lys	p.T1968K	ENST00000409792	NM_014159.6	1968	aCa/aAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164722	47164729	+	frameshift_variant	Frame_Shift_Del	DEL	TGTCTTCT	TGTCTTCT	-			P-0086149-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			466	98	439	0	ENST00000409792.3:c.1397_1404del	p.Lys466IlefsTer22	p.K466Ifs*22	ENST00000409792	NM_014159.6	466	aAGAAGACA/a																																																																															
TET2	54790	MSKCC	GRCh37	4	106158159	106158159	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086149-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			622	61	474	0	ENST00000380013.4:c.3060G>T	p.Gln1020His	p.Q1020H	ENST00000380013	NM_001127208.2	1020	caG/caT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0086299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	119	236	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0086299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	102	437	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149453003	149453003	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756763314		P-0086299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	57	364	0	ENST00000286301.3:c.943G>A	p.Val315Met	p.V315M	ENST00000286301	NM_005211.3	315	Gtg/Atg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610047	81610047	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	50	468	0	ENST00000298171.2:c.1645T>A	p.Cys549Ser	p.C549S	ENST00000298171	NM_000369.2	549	Tgc/Agc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198265449	198265449	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	22	291	0	ENST00000335508.6:c.2708A>G	p.Gln903Arg	p.Q903R	ENST00000335508	NM_012433.2	903	cAg/cGg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630795	187630795	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	52	452	0	ENST00000441802.2:c.187A>T	p.Ile63Phe	p.I63F	ENST00000441802	NM_005245.3	63	Att/Ttt																																																																															
NBN	4683	MSKCC	GRCh37	8	90983507	90983507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	55	203	0	ENST00000265433.3:c.596C>T	p.Pro199Leu	p.P199L	ENST00000265433	NM_002485.4	199	cCt/cTt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5123008	5123008	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	18	292	0	ENST00000381652.3:c.3064G>T	p.Ala1022Ser	p.A1022S	ENST00000381652	NM_004972.3	1022	Gct/Tct																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931956	39931956	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	27	426	0	ENST00000378444.4:c.2643C>A	p.Asp881Glu	p.D881E	ENST00000378444	NM_001123385.1	881	gaC/gaA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0086300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	5117	438	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0086300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	665	608	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021433	31021433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	611	614	0	ENST00000375687.4:c.1432G>T	p.Gly478Cys	p.G478C	ENST00000375687	NM_015338.5	478	Ggt/Tgt																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032006	26032006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			998	183	695	0	ENST00000244661.2:c.283G>A	p.Glu95Lys	p.E95K	ENST00000244661	NM_003537.3	95	Gag/Aag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098609	47098609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	328	633	0	ENST00000409792.3:c.6665C>T	p.Pro2222Leu	p.P2222L	ENST00000409792	NM_014159.6	2222	cCa/cTa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244433	46244433	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0086315-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	73	481	0	ENST00000334344.6:c.2527C>T	p.Gln843Ter	p.Q843*	ENST00000334344	NM_152641.2	843	Caa/Taa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023388	31023388	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0086315-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	69	429	1	ENST00000375687.4:c.2873C>A	p.Ser958Ter	p.S958*	ENST00000375687	NM_015338.5	958	tCa/tAa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061215	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCAGCCGTTCTCGAACATGTT	GCAGCCGTTCTCGAACATGTT	-			P-0086324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	107	528	0	ENST00000250448.2:c.754_774del	p.Asn252_Cys258del	p.N252_C258del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTGC/-																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44950067	44950068	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0086324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	72	199	0	ENST00000377967.4:c.3839dup	p.Asn1280LysfsTer11	p.N1280Kfs*11	ENST00000377967	NM_021140.2	1279	cga/cgAa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115982	8115983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0086325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	108	551	0	ENST00000346208.3:c.1330dup	p.Ter444LeufsTer63	p.*444Lfs*63	ENST00000346208		443	ggt/ggTt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149514571	149514571	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs540587683		P-0086325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	44	485	0	ENST00000261799.4:c.373G>A	p.Val125Met	p.V125M	ENST00000261799	NM_002609.3	125	Gtg/Atg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26928015	26928015	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0086325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	15	345	0	ENST00000381527.3:c.454T>A	p.Leu152Met	p.L152M	ENST00000381527	NM_001260.1	152	Ttg/Atg																																																																															
CIC	23152	MSKCC	GRCh37	19	42794974	42794974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	30	548	0	ENST00000575354.2:c.2054C>T	p.Pro685Leu	p.P685L	ENST00000575354	NM_015125.3	685	cCc/cTc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434211	121434211	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	22	656	0	ENST00000257555.6:c.1102A>G	p.Lys368Glu	p.K368E	ENST00000257555		368	Aag/Gag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101421	27101422	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0086325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	19	318	0	ENST00000324856.7:c.4704dup	p.Pro1569SerfsTer3	p.P1569Sfs*3	ENST00000324856	NM_006015.4	1568	cct/ccTt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30668410	30668410	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0086325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	31	414	0	ENST00000376406.3:c.6103-1G>C		p.X2035_splice	ENST00000376406	NM_014641.2	2035																																																																																
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0056181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			89	135	236	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
GAB1	2549	MSKCC	GRCh37	4	144336756	144336756	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	35	231	0	ENST00000262994.4:c.199C>G	p.Gln67Glu	p.Q67E	ENST00000262994	NM_002039.3	67	Caa/Gaa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0066677-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			474	40	416	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0066677-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			297	51	278	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438242	56438242	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066677-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	74	412	0	ENST00000407977.2:c.751del	p.Ser251AlafsTer168	p.S251Afs*168	ENST00000407977		251	Agc/gc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249156	55249156	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0066677-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			472	27	419	0	ENST00000275493.2:c.2454T>A	p.Cys818Ter	p.C818*	ENST00000275493	NM_005228.3	818	tgT/tgA																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971192	21971194	+	frameshift_variant	Frame_Shift_Del	DEL	TGC	TGC	AG			P-0066677-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			436	27	414	0	ENST00000304494.5:c.164_166delinsCT	p.Gly55AlafsTer91	p.G55Afs*91	ENST00000304494	NM_000077.4	55	gGCAgc/gCTgc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0083108-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			261	84	404	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778720		P-0083108-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			426	95	426	0	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399458	139399458	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752839680		P-0083108-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			439	148	441	0	ENST00000277541.6:c.4685C>T	p.Ala1562Val	p.A1562V	ENST00000277541	NM_017617.3	1562	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0083108-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			51	38	236	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575089	48575090	+	missense_variant	Missense_Mutation	DNP	TA	TA	AT			P-0083108-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			102	15	273	0	ENST00000342988.3:c.283_284delinsAT	p.Tyr95Ile	p.Y95I	ENST00000342988	NM_005359.5	95	TAt/ATt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0086197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	115	449	0	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag																																																																															
AGO2	27161	MSKCC	GRCh37	8	141570474	141570474	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0086197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	88	308	0	ENST00000220592.5:c.654T>A	p.Asp218Glu	p.D218E	ENST00000220592	NM_012154.3	218	gaT/gaA																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643659	52643660	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	AGATC			P-0086197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	47	405	0	ENST00000394830.3:c.2232_2236dup	p.Tyr746Ter	p.Y746*	ENST00000394830	NM_018313.4	746	tac/tGATCTac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112395	115112395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	294	329	0	ENST00000257566.3:c.1345C>A	p.Leu449Met	p.L449M	ENST00000257566	NM_016569.3	449	Ctg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431193	49431193	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	208	396	0	ENST00000301067.7:c.9946G>T	p.Gly3316Cys	p.G3316C	ENST00000301067	NM_003482.3	3316	Ggt/Tgt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223541	2223541	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	366	311	0	ENST00000326181.6:c.1072G>T	p.Ala358Ser	p.A358S	ENST00000326181	NM_032271.2	358	Gca/Tca																																																																															
BRCA1	672	MSKCC	GRCh37	17	41276094	41276094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs144792613		P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	121	231	0	ENST00000357654.3:c.20G>T	p.Arg7Leu	p.R7L	ENST00000357654	NM_007294.3	7	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7573991	7573991	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	325	239	0	ENST00000269305.4:c.1036G>T	p.Glu346Ter	p.E346*	ENST00000269305	NM_001126112.2	346	Gag/Tag																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872936	136872936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	533	474	0	ENST00000241393.3:c.562C>T	p.Arg188Cys	p.R188C	ENST00000241393	NM_003467.2	188	Cgc/Tgc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230759	66230759	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	115	376	0	ENST00000273854.3:c.2212C>A	p.His738Asn	p.H738N	ENST00000273854	NM_004439.5	738	Cat/Aat																																																																															
FLT4	2324	MSKCC	GRCh37	5	180055955	180055955	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	363	278	0	ENST00000261937.6:c.1030G>C	p.Glu344Gln	p.E344Q	ENST00000261937	NM_182925.4	344	Gag/Cag																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115267841	115267841	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs112658464		P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	227	282	0	ENST00000438362.2:c.1891+1G>T		p.X631_splice	ENST00000438362	NM_001242891.1	631																																																																																
APLNR	187	MSKCC	GRCh37	11	57003527	57003527	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	C			P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	397	429	0	ENST00000257254.3:c.952C>G	p.Gln318Glu	p.Q318E	ENST00000257254		318	Cag/Gag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984520	72984520	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	207	342	0	ENST00000268489.5:c.3064G>T	p.Gly1022Cys	p.G1022C	ENST00000268489	NM_006885.3	1022	Ggc/Tgc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81990333	81990333	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	171	332	0	ENST00000359376.3:c.3604C>T	p.Gln1202Ter	p.Q1202*	ENST00000359376	NM_002661.3	1202	Cag/Tag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37665984	37665984	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	133	268	0	ENST00000447079.4:c.2636G>C	p.Gly879Ala	p.G879A	ENST00000447079	NM_015083.1	879	gGa/gCa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152041	11152041	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	335	264	0	ENST00000344626.4:c.4229C>G	p.Ser1410Ter	p.S1410*	ENST00000344626	NM_003072.3	1410	tCa/tGa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612306	1612307	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	158	258	0	ENST00000344749.5:c.1712_1713del	p.Arg571HisfsTer127	p.R571Hfs*127	ENST00000344749	NM_001136139.2	571	cGC/c																																																																															
CIC	23152	MSKCC	GRCh37	19	42796296	42796296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			924	54	356	0	ENST00000575354.2:c.2945G>A	p.Ser982Asn	p.S982N	ENST00000575354	NM_015125.3	982	aGc/aAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5225787	5225787	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	129	219	0	ENST00000357368.4:c.2445G>C	p.Lys815Asn	p.K815N	ENST00000357368	NM_002850.3	815	aaG/aaC																																																																															
ATR	545	MSKCC	GRCh37	3	142168301	142168301	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	194	332	0	ENST00000350721.4:c.7905G>C	p.Gln2635His	p.Q2635H	ENST00000350721	NM_001184.3	2635	caG/caC																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156615	55156615	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	192	359	0	ENST00000257290.5:c.3016G>C	p.Gly1006Arg	p.G1006R	ENST00000257290	NM_006206.4	1006	Ggt/Cgt																																																																															
REST	5978	MSKCC	GRCh37	4	57797379	57797379	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	215	512	0	ENST00000309042.7:c.2355G>T	p.Met785Ile	p.M785I	ENST00000309042	NM_005612.4	785	atG/atT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93953214	93953214	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	281	322	0	ENST00000369303.4:c.2927A>T	p.Lys976Ile	p.K976I	ENST00000369303	NM_004440.3	976	aAa/aTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55210074	55210074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	6631	276	0	ENST00000275493.2:c.184C>G	p.Leu62Val	p.L62V	ENST00000275493	NM_005228.3	62	Ctt/Gtt																																																																															
RAC1	5879	MSKCC	GRCh37	7	6441601	6441601	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	78	93	0	ENST00000356142.4:c.448G>T	p.Glu150Ter	p.E150*	ENST00000356142	NM_018890.3	150	Gag/Tag																																																																															
ATRX	546	MSKCC	GRCh37	X	76931728	76931728	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	173	258	0	ENST00000373344.5:c.3802G>C	p.Glu1268Gln	p.E1268Q	ENST00000373344	NM_000489.3	1268	Gag/Cag																																																																															
ATRX	546	MSKCC	GRCh37	X	76952131	76952131	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	92	259	0	ENST00000373344.5:c.304A>T	p.Thr102Ser	p.T102S	ENST00000373344	NM_000489.3	102	Act/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0086234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	10	308	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0086234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	16	401	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46574146	46574146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	20	446	0	ENST00000263734.3:c.161C>T	p.Ala54Val	p.A54V	ENST00000263734	NM_001430.4	54	gCc/gTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591937	48591945	+	inframe_deletion	In_Frame_Del	DEL	TCTCCAATG	TCTCCAATG	-			P-0086234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	23	405	0	ENST00000342988.3:c.1102_1110del	p.Ser368_Val370del	p.S368_V370del	ENST00000342988	NM_005359.5	367	cTCTCCAATGtc/ctc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022365	31022367	+	frameshift_variant	Frame_Shift_Del	DEL	TTA	TTA	CT			P-0086234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	21	393	0	ENST00000375687.4:c.1850_1852delinsCT	p.Ile617ThrfsTer86	p.I617Tfs*86	ENST00000375687	NM_015338.5	617	aTTAaa/aCTaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0086237-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	36	297	1	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0086237-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	39	362	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0086237-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	20	243	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112174384	112174384	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0086237-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	29	386	0	ENST00000257430.4:c.3094del	p.Ser1032GlnfsTer5	p.S1032Qfs*5	ENST00000257430	NM_000038.5	1031	taT/ta																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0086238-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	34	323	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
MED12	9968	MSKCC	GRCh37	X	70356485	70356485	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0086238-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	21	251	0	ENST00000374080.3:c.5380C>T	p.Gln1794Ter	p.Q1794*	ENST00000374080		1794	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0086271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	12	269	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579361	7579361	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1064796722		P-0086271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	26	474	0	ENST00000269305.4:c.326T>C	p.Phe109Ser	p.F109S	ENST00000269305	NM_001126112.2	109	tTc/tCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0086271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	13	252	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473750	67473750	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	14	358	0	ENST00000327367.4:c.830T>C	p.Val277Ala	p.V277A	ENST00000327367	NM_005902.3	277	gTc/gCc																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913500		P-0028004-T22-IM7									Unknown	SOMATIC				MSK-IMPACT			543	21	426	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																															
SMO	6608	MSKCC	GRCh37	7	128843381	128843381	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028004-T22-IM7									Unknown	SOMATIC				MSK-IMPACT			376	157	458	0	ENST00000249373.3:c.488G>A	p.Trp163Ter	p.W163*	ENST00000249373	NM_005631.4	163	tGg/tAg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0028004-T22-IM7									Unknown	SOMATIC				MSK-IMPACT			315	16	405	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217041	7217041	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0085777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	66	335	0	ENST00000380728.2:c.481-1G>C		p.X161_splice	ENST00000380728		161																																																																																
PHF6	84295	MSKCC	GRCh37	X	133547621	133547621	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	45	166	0	ENST00000332070.3:c.519A>T	p.Lys173Asn	p.K173N	ENST00000332070	NM_032458.2	173	aaA/aaT																																																																															
STAG2	10735	MSKCC	GRCh37	X	123190012	123190012	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	39	155	0	ENST00000218089.9:c.1231del	p.Glu411LysfsTer14	p.E411Kfs*14	ENST00000218089	NM_001042749.1	411	Gaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576926	7576927	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CT			P-0085777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			752	44	401	0	ENST00000269305.4:c.920-2_920-1dup	p.Ala307GlufsTer39	p.A307Efs*39	ENST00000269305	NM_001126112.2	307	gca/gAGca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs864622237		P-0085111-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			141	97	241	0	ENST00000269305.4:c.700T>G	p.Tyr234Asp	p.Y234D	ENST00000269305	NM_001126112.2	234	Tac/Gac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249020	55249022	+	missense_variant	Missense_Mutation	ONP	ACG	ACG	TCA			P-0085111-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			201	624	267	0	ENST00000275493.2:c.2318_2320delinsTCA	p.His773_Val774delinsLeuMet	p.H773_V774delinsLM	ENST00000275493	NM_005228.3	773	cACGtg/cTCAtg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134256	41134256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085111-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			127	144	302	0	ENST00000379561.5:c.1372G>A	p.Ala458Thr	p.A458T	ENST00000379561	NM_002015.3	458	Gcg/Acg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458185	120458185	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085111-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	94	337	0	ENST00000256646.2:c.7160C>G	p.Pro2387Arg	p.P2387R	ENST00000256646	NM_024408.3	2387	cCt/cGt																																																																															
KIT	3815	MSKCC	GRCh37	4	55561879	55561879	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085111-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			133	89	258	0	ENST00000288135.5:c.269C>A	p.Thr90Asn	p.T90N	ENST00000288135	NM_000222.2	90	aCc/aAc																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594531	47594531	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085111-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			217	115	276	0	ENST00000395288.2:c.1508C>A	p.Thr503Lys	p.T503K	ENST00000395288	NM_016506.5	503	aCa/aAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085652-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			546	9	0	0	ENST00000269305.4:c.273del	p.Trp91CysfsTer32	p.W91Cfs*32	ENST00000269305	NM_001126112.2	91	tgG/tg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0085652-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			403	11	342	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0085652-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			498	21	412	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103504612	103504612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			435	36	329	0	ENST00000355739.4:c.233G>T	p.Gly78Val	p.G78V	ENST00000355739	NM_000123.3	78	gGg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578482	7578522	+	frameshift_variant	Frame_Shift_Del	DEL	TGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGT	TGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGT	-			P-0085903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			702	66	488	0	ENST00000269305.4:c.408_448del	p.Gln136HisfsTer31	p.Q136Hfs*31	ENST00000269305	NM_001126112.2	136	caACTGGCCAAGACCTGCCCTGTGCAGCTGTGGGTTGATTCCAca/caca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272366	15272366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			588	63	439	0	ENST00000263388.2:c.6073G>T	p.Asp2025Tyr	p.D2025Y	ENST00000263388	NM_000435.2	2025	Gat/Tat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971098	21971098	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs878853647		P-0085903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			518	60	379	0	ENST00000304494.5:c.260G>C	p.Arg87Pro	p.R87P	ENST00000304494	NM_000077.4	87	cGg/cCg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628435	187628435	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0085903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			654	63	488	0	ENST00000441802.2:c.2547del	p.Asp850ThrfsTer8	p.D850Tfs*8	ENST00000441802	NM_005245.3	849	aaA/aa																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0086096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	25	298	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0086096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	32	251	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
CBFB	865	MSKCC	GRCh37	16	67070575	67070575	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0086096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	40	275	0	ENST00000412916.2:c.199C>T	p.Gln67Ter	p.Q67*	ENST00000412916		67	Cag/Tag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226199	53226199	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0086096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	25	252	0	ENST00000375401.3:c.2650C>T	p.Gln884Ter	p.Q884*	ENST00000375401	NM_004187.3	884	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115703	8115704	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0086096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	27	284	0	ENST00000346208.3:c.1049_1050del	p.Ile350LysfsTer20	p.I350Kfs*20	ENST00000346208		350	aTT/a																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0086098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	127	334	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247367	153247367	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs747241612		P-0086098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	32	291	0	ENST00000281708.4:c.1435C>G	p.Arg479Gly	p.R479G	ENST00000281708	NM_033632.3	479	Cga/Gga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0086098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			67	36	258	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BTK	695	MSKCC	GRCh37	X	100613685	100613685	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0086098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	71	266	0	ENST00000308731.7:c.895-1G>T		p.X299_splice	ENST00000308731	NM_000061.2	299																																																																																
SH2B3	10019	MSKCC	GRCh37	12	111886043	111886043	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0086098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	125	383	0	ENST00000341259.2:c.1665C>A	p.Tyr555Ter	p.Y555*	ENST00000341259	NM_005475.2	555	taC/taA																																																																															
RAF1	5894	MSKCC	GRCh37	3	12627251	12627251	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0086098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	71	271	0	ENST00000251849.4:c.1465T>A	p.Leu489Met	p.L489M	ENST00000251849	NM_002880.3	489	Ttg/Atg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412353	63412353	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	106	464	0	ENST00000330258.3:c.814C>A	p.Pro272Thr	p.P272T	ENST00000330258	NM_152424.3	272	Ccc/Acc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162135	38162135	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0086098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	48	307	0	ENST00000317025.8:c.2581A>C	p.Asn861His	p.N861H	ENST00000317025	NM_023034.1	861	Aat/Cat																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727480	66727480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	42	379	0	ENST00000307102.5:c.196G>A	p.Asp66Asn	p.D66N	ENST00000307102	NM_002755.3	66	Gac/Aac																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870955	12870956	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0086098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	25	406	0	ENST00000228872.4:c.182_183del	p.Asn61IlefsTer63	p.N61Ifs*63	ENST00000228872	NM_004064.3	61	aAT/a																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573168	64573168	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086101-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	126	351	0	ENST00000337652.1:c.1139T>C	p.Leu380Pro	p.L380P	ENST00000337652	NM_130803.2	380	cTg/cCg																																																																															
RARA	5914	MSKCC	GRCh37	17	38487554	38487554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	55	443	0	ENST00000254066.5:c.89del	p.Pro30LeufsTer12	p.P30Lfs*12	ENST00000254066	NM_000964.3	28	ttC/tt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	149	414	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	109	547	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023559	27023560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	28	394	0	ENST00000324856.7:c.671dup	p.Pro225AlafsTer175	p.P225Afs*175	ENST00000324856	NM_006015.4	222	tac/taCc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	76	412	0	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																															
CDH1	999	MSKCC	GRCh37	16	68849663	68849663	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587780113		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	66	396	0	ENST00000261769.5:c.1565+1G>A		p.X522_splice	ENST00000261769	NM_004360.3	522																																																																																
GSK3B	2932	MSKCC	GRCh37	3	119562107	119562107	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139402886		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	36	327	0	ENST00000316626.5:c.1229C>T	p.Ala410Val	p.A410V	ENST00000316626		410	gCg/gTg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	47	285	0	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	73	402	2	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	56	469	0	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997826	149997826	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	24	395	3	ENST00000253339.5:c.2641del	p.Asp881IlefsTer11	p.D881Ifs*11	ENST00000253339		881	Gat/at																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136949	64136949	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749917386		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	66	324	0	ENST00000334205.4:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000334205	NM_003942.2	487	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	132	353	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	78	419	8	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30314670	30314670	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	68	422	0	ENST00000262643.3:c.1219C>T	p.Pro407Ser	p.P407S	ENST00000262643	NM_001238.2	407	Ccg/Tcg																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	58	377	0	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793677	89793677	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	69	393	0	ENST00000336032.3:c.752del	p.Lys251SerfsTer14	p.K251Sfs*14	ENST00000336032	NM_006813.2	249	gAa/ga																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202731	128202731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	30	428	0	ENST00000341105.2:c.989G>A	p.Arg330Gln	p.R330Q	ENST00000341105	NM_032638.4	330	cGa/cAa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1297203260		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	79	396	0	ENST00000245479.2:c.916del	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37053348	37053348	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1192414628		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	108	360	0	ENST00000231790.2:c.588del	p.Lys196AsnfsTer6	p.K196Nfs*6	ENST00000231790	NM_000249.3	195	Aaa/aa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259480	16259480	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	88	495	1	ENST00000375759.3:c.6750del	p.Ala2251GlnfsTer102	p.A2251Qfs*102	ENST00000375759	NM_015001.2	2249	Ccc/cc																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346220	152346220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	62	403	5	ENST00000359321.1:c.350del	p.Leu117TrpfsTer17	p.L117Wfs*17	ENST00000359321	NM_005431.1	117	tTg/tg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115397	115115397	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866796237		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	48	317	0	ENST00000257566.3:c.929G>A	p.Arg310Gln	p.R310Q	ENST00000257566	NM_016569.3	310	cGa/cAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	23	473	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998128	169998128	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs753143066		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	54	340	3	ENST00000295797.4:c.826del	p.Thr276GlnfsTer7	p.T276Qfs*7	ENST00000295797	NM_002740.5	273	ttA/tt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190747	11190747	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759603938		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	85	457	1	ENST00000361445.4:c.5452C>T	p.Arg1818Cys	p.R1818C	ENST00000361445	NM_004958.3	1818	Cgt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426778	49426778	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	89	536	0	ENST00000301067.7:c.11710C>T	p.Gln3904Ter	p.Q3904*	ENST00000301067	NM_003482.3	3904	Cag/Tag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289953	15289953	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772172068		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	102	513	0	ENST00000263388.2:c.3601C>T	p.Arg1201Cys	p.R1201C	ENST00000263388	NM_000435.2	1201	Cgc/Tgc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190682809	190682810	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1275949235		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	46	273	0	ENST00000441310.2:c.492dup	p.Cys165MetfsTer2	p.C165Mfs*2	ENST00000441310	NM_000534.4	162	gca/gcAa																																																																															
EP300	2033	MSKCC	GRCh37	22	41525977	41525977	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	16	327	0	ENST00000263253.7:c.1256del	p.Asn419MetfsTer12	p.N419Mfs*12	ENST00000263253	NM_001429.3	418	Aaa/aa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852250	63852250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	66	387	0	ENST00000279873.7:c.3028C>T	p.Arg1010Trp	p.R1010W	ENST00000279873	NM_032199.2	1010	Cgg/Tgg																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652527	48652527	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	67	430	0	ENST00000376670.3:c.1203del	p.Thr402ProfsTer30	p.T402Pfs*30	ENST00000376670	NM_002049.3	400	Ccc/cc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522328	157522328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs542516057		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	79	471	0	ENST00000346085.5:c.4600C>T	p.Arg1534Cys	p.R1534C	ENST00000346085	NM_020732.3	1534	Cgc/Tgc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87339190	87339190	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200636057		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	20	330	0	ENST00000277120.3:c.772G>A	p.Asp258Asn	p.D258N	ENST00000277120		258	Gat/Aat																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324684	31324684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	39	199	0	ENST00000412585.2:c.124G>A	p.Gly42Arg	p.G42R	ENST00000412585	NM_005514.6	42	Ggg/Agg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942172	71942172	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs896238433		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	101	437	0	ENST00000298229.2:c.1436G>A	p.Arg479His	p.R479H	ENST00000298229	NM_001567.3	479	cGc/cAc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99456457	99456457	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376607968		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	90	420	0	ENST00000268035.6:c.1774G>A	p.Asp592Asn	p.D592N	ENST00000268035	NM_000875.3	592	Gac/Aac																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2096331	2096331	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773364076		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	81	359	0	ENST00000219066.1:c.176G>A	p.Arg59Gln	p.R59Q	ENST00000219066	NM_002528.5	59	cGg/cAg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95574405	95574405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	21	269	0	ENST00000343455.3:c.2462G>A	p.Arg821His	p.R821H	ENST00000343455	NM_177438.2	821	cGc/cAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29585395	29585395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138227618		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	66	345	0	ENST00000358273.4:c.4207G>A	p.Gly1403Ser	p.G1403S	ENST00000358273	NM_001042492.2	1403	Ggt/Agt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15383895	15383895	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	21	373	1	ENST00000263377.2:c.16G>T	p.Gly6Cys	p.G6C	ENST00000263377	NM_058243.2	6	Ggc/Tgc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348863	89348863	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1364690005		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	72	454	0	ENST00000301030.4:c.4087C>T	p.Arg1363Ter	p.R1363*	ENST00000301030	NM_001256183.1	1363	Cga/Tga																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202212	138202212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	90	420	0	ENST00000237289.4:c.2129G>A	p.Ser710Asn	p.S710N	ENST00000237289	NM_001270507.1	710	aGc/aAc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31421482	31421482	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	36	317	0	ENST00000344624.3:c.3422G>A	p.Gly1141Asp	p.G1141D	ENST00000344624		1141	gGc/gAc																																																																															
MST1	4485	MSKCC	GRCh37	3	49723357	49723357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	43	240	0	ENST00000449682.2:c.1186G>A	p.Val396Ile	p.V396I	ENST00000449682	NM_020998.3	396	Gtc/Atc																																																																															
BTK	695	MSKCC	GRCh37	X	100615707	100615707	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs138352992		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	77	368	0	ENST00000308731.7:c.625G>T	p.Ala209Ser	p.A209S	ENST00000308731	NM_000061.2	209	Gca/Tca																																																																															
TAP1	6890	MSKCC	GRCh37	6	32819946	32819946	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	38	376	0	ENST00000354258.4:c.964G>T	p.Gly322Ter	p.G322*	ENST00000354258	NM_000593.5	322	Gga/Tga																																																																															
DIS3	22894	MSKCC	GRCh37	13	73349358	73349359	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	48	328	0	ENST00000377767.4:c.977_978del	p.Thr326ArgfsTer5	p.T326Rfs*5	ENST00000377767	NM_014953.3	326	aCA/a																																																																															
ETV6	2120	MSKCC	GRCh37	12	12043940	12043940	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	19	353	0	ENST00000396373.4:c.1319A>C	p.Gln440Pro	p.Q440P	ENST00000396373	NM_001987.4	440	cAg/cCg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25991738	25991738	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	56	285	0	ENST00000435504.4:c.505-1G>T		p.X169_splice	ENST00000435504		169																																																																																
PTCH1	5727	MSKCC	GRCh37	9	98268689	98268689	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	66	355	0	ENST00000331920.6:c.394G>T	p.Val132Phe	p.V132F	ENST00000331920	NM_000264.3	132	Gtt/Ttt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117650558	117650558	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	24	457	0	ENST00000368508.3:c.5300del	p.Asn1767IlefsTer22	p.N1767Ifs*22	ENST00000368508	NM_002944.2	1767	aAt/at																																																																															
POT1	25913	MSKCC	GRCh37	7	124464119	124464119	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779050803		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	33	279	0	ENST00000357628.3:c.1802C>T	p.Pro601Leu	p.P601L	ENST00000357628	NM_015450.2	601	cCg/cTg																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724670	112724670	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	56	358	0	ENST00000369452.4:c.554C>A	p.Pro185His	p.P185H	ENST00000369452	NM_007373.3	185	cCt/cAt																																																																															
IRF4	3662	MSKCC	GRCh37	6	407497	407498	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	47	336	0	ENST00000380956.4:c.1259dup	p.Asn420LysfsTer112	p.N420Kfs*112	ENST00000380956	NM_001195286.1	419	caa/cAaa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119888	70119888	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	85	426	0	ENST00000245479.2:c.890A>G	p.Tyr297Cys	p.Y297C	ENST00000245479	NM_000346.3	297	tAc/tGc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850886	63850886	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	92	432	0	ENST00000279873.7:c.1664T>G	p.Leu555Trp	p.L555W	ENST00000279873	NM_032199.2	555	tTg/tGg																																																																															
FYN	2534	MSKCC	GRCh37	6	112015691	112015691	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	78	407	0	ENST00000368678.4:c.1151T>A	p.Ile384Asn	p.I384N	ENST00000368678		384	aTc/aAc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867548	45867548	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775864354		P-0086102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	84	478	0	ENST00000391945.4:c.760C>T	p.Arg254Trp	p.R254W	ENST00000391945	NM_000400.3	254	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0086103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	59	263	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
BLM	641	MSKCC	GRCh37	15	91347589	91347589	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0086103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	33	325	0	ENST00000355112.3:c.3751G>T	p.Glu1251Ter	p.E1251*	ENST00000355112	NM_000057.2	1251	Gaa/Taa																																																																															
APLNR	187	MSKCC	GRCh37	11	57003426	57003426	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	C			P-0086103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	143	447	0	ENST00000257254.3:c.1053C>G	p.Ser351Arg	p.S351R	ENST00000257254		351	agC/agG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0086104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	291	342	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0086104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	92	284	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17951119	17951119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	82	300	0	ENST00000458235.1:c.1174G>A	p.Gly392Arg	p.G392R	ENST00000458235	NM_000215.3	392	Ggg/Agg																																																																															
BRAF	673	MSKCC	GRCh37	7	140534564	140534564	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	369	363	0	ENST00000288602.6:c.349A>G	p.Met117Val	p.M117V	ENST00000288602	NM_004333.4	117	Atg/Gtg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023182	27023183	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0086104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	82	295	0	ENST00000324856.7:c.288_289delinsTT	p.Glu97Ter	p.E97*	ENST00000324856	NM_006015.4	96	gcGGag/gcTTag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55138657	55138657	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	107	286	0	ENST00000257290.5:c.1334T>C	p.Ile445Thr	p.I445T	ENST00000257290	NM_006206.4	445	aTt/aCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0086169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	85	264	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501191		P-0086169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	159	415	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	164	373	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0086169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	175	399	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175240	112175240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0086169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	200	418	0	ENST00000257430.4:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000257430	NM_000038.5	1317	Gaa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910993	114911577	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCAGCCAATACCCAGCCTGTGTGGGCTCTTCACTCCCTTACAAAGAGAGAGAGAGTGCACAGTGGCAGAATCTCACTGTACCACCGTGGGTTAGAACAGAACTGTTTTTTGTGTGTGTACTTGGATACACTGGGATTTGCAACCACTTCCCTGCCCCCTAACCGCATCATTGAACATTTAGAGCTTTGTTCTGCAAGCAGGAGAAAACCCTGCCGAGGTGAAGACAGCAACCATGTGCTTTCCCCTCTGGCTTGGGAAAATTGTATATTTGTGAAACTTGAGGAAGTGATTGCAAAATCCCTCTCTTCCCCCAACCCCTCCCCAAGCTATTTTTGTTCCATTTTCCGGGGTGCAGAAGAACTAAAAGCATGCTTTTTAATCCAAAACTGCTAGGCTTGGGGGTTATGAGACAAGGAGATACGTTCCCTGCCATGGAGGAAGTTGGACCACGACCTTGTTTATTGGGTTGCGTCTGTTTTGTCTATCTCCAGAAAGCATCAGGACTCCAAAAAGGAAGAAGAAAAGAAGAAGCCCCACATAAAGAAACCTCTTAATGCATTCATGTTGTATATGAAGGAAATGAGA	GCAGCCAATACCCAGCCTGTGTGGGCTCTTCACTCCCTTACAAAGAGAGAGAGAGTGCACAGTGGCAGAATCTCACTGTACCACCGTGGGTTAGAACAGAACTGTTTTTTGTGTGTGTACTTGGATACACTGGGATTTGCAACCACTTCCCTGCCCCCTAACCGCATCATTGAACATTTAGAGCTTTGTTCTGCAAGCAGGAGAAAACCCTGCCGAGGTGAAGACAGCAACCATGTGCTTTCCCCTCTGGCTTGGGAAAATTGTATATTTGTGAAACTTGAGGAAGTGATTGCAAAATCCCTCTCTTCCCCCAACCCCTCCCCAAGCTATTTTTGTTCCATTTTCCGGGGTGCAGAAGAACTAAAAGCATGCTTTTTAATCCAAAACTGCTAGGCTTGGGGGTTATGAGACAAGGAGATACGTTCCCTGCCATGGAGGAAGTTGGACCACGACCTTGTTTATTGGGTTGCGTCTGTTTTGTCTATCTCCAGAAAGCATCAGGACTCCAAAAAGGAAGAAGAAAAGAAGAAGCCCCACATAAAGAAACCTCTTAATGCATTCATGTTGTATATGAAGGAAATGAGA	-			P-0086169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	113	136	0	ENST00000543371.1:c.1001+114_1098del		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																																
APC	324	MSKCC	GRCh37	5	112174618	112174618	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0086169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	161	502	0	ENST00000257430.4:c.3328del	p.Ser1110GlnfsTer16	p.S1110Qfs*16	ENST00000257430	NM_000038.5	1109	ggT/gg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0086174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	122	299	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112771460	112771460	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs778280516		P-0086174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	157	389	0	ENST00000369452.4:c.1633A>G	p.Ile545Val	p.I545V	ENST00000369452	NM_007373.3	545	Atc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577522	7577531	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGAGGATG	GGTGAGGATG	-			P-0086174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	78	331	0	ENST00000269305.4:c.750_759del	p.Ile251SerfsTer91	p.I251Sfs*91	ENST00000269305	NM_001126112.2	250	ccCATCCTCACC/cc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519739		P-0086176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	52	398	0	ENST00000342988.3:c.1051G>C	p.Asp351His	p.D351H	ENST00000342988	NM_005359.5	351	Gat/Cat																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395186	139395186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	50	393	0	ENST00000277541.6:c.5752G>A	p.Ala1918Thr	p.A1918T	ENST00000277541	NM_017617.3	1918	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579592	7579592	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs879254212		P-0086176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	67	378	0	ENST00000269305.4:c.97-2A>G		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
EGFR	1956	MSKCC	GRCh37	7	55249012	55249013	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGG			P-0086176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	103	340	0	ENST00000275493.2:c.2310_2311insGGG	p.Asp770_Asn771insGly	p.D770_N771insG	ENST00000275493	NM_005228.3	770	-/GGG																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18762480	18762480	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	30	294	0	ENST00000266497.5:c.3976C>A	p.Pro1326Thr	p.P1326T	ENST00000266497		1326	Cca/Aca																																																																															
CUL3	8452	MSKCC	GRCh37	2	225400286	225400286	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0086176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	23	303	0	ENST00000264414.4:c.337C>T	p.Gln113Ter	p.Q113*	ENST00000264414	NM_003590.4	113	Caa/Taa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0086178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	69	274	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0086178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	151	214	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112178117	112178117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	97	404	0	ENST00000257430.4:c.6826C>T	p.Pro2276Ser	p.P2276S	ENST00000257430	NM_000038.5	2276	Cca/Tca																																																																															
PALB2	79728	MSKCC	GRCh37	16	23619200	23619200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	53	317	0	ENST00000261584.4:c.3335C>T	p.Pro1112Leu	p.P1112L	ENST00000261584	NM_024675.3	1112	cCa/cTa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	341260	341271	+	inframe_deletion	In_Frame_Del	DEL	CGCAGGCGCGTC	CGCAGGCGCGTC	-			P-0086178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	116	296	0	ENST00000262320.3:c.2213_2224del	p.Gly738_Cys741del	p.G738_C741del	ENST00000262320	NM_003502.3	738	gGACGCGCCTGCGtc/gtc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62323128	62323130	+	inframe_deletion,NMD_transcript_variant	In_Frame_Del	DEL	GAG	GAG	-			P-0086178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	29	299	0	ENST00000482936.1:c.2590_2592del	p.Glu864del	p.E864del	ENST00000482936		864	GAG/-																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081643	143081643	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	108	306	0	ENST00000262992.4:c.1431del	p.Arg477SerfsTer27	p.R477Sfs*27	ENST00000262992	NM_001101669.1	477	agG/ag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248390	212248390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	80	406	0	ENST00000342788.4:c.3877G>C	p.Gly1293Arg	p.G1293R	ENST00000342788	NM_005235.2	1293	Ggc/Cgc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274102	10274102	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	153	421	0	ENST00000330684.3:c.167G>C	p.Gly56Ala	p.G56A	ENST00000330684	NM_001134407.1	56	gGc/gCc																																																																															
ATM	472	MSKCC	GRCh37	11	108128321	108128321	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	155	179	0	ENST00000278616.4:c.2364del	p.Ser788ArgfsTer20	p.S788Rfs*20	ENST00000278616	NM_000051.3	788	agC/ag																																																																															
POLE	5426	MSKCC	GRCh37	12	133256567	133256567	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	97	326	0	ENST00000320574.5:c.396G>T	p.Glu132Asp	p.E132D	ENST00000320574	NM_006231.2	132	gaG/gaT																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114164	115114164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	107	356	0	ENST00000257566.3:c.1053G>T	p.Gln351His	p.Q351H	ENST00000257566	NM_016569.3	351	caG/caT																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31387059	31387059	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0086178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	62	383	0	ENST00000328111.2:c.1684A>T	p.Lys562Ter	p.K562*	ENST00000328111	NM_006892.3	562	Aag/Tag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918517	44918517	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030906-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			176	39	197	0	ENST00000377967.4:c.1002del	p.Met335TrpfsTer24	p.M335Wfs*24	ENST00000377967	NM_021140.2	334	Ccc/cc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95577721	95577721	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030906-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			405	49	396	1	ENST00000343455.3:c.2189A>G	p.Asp730Gly	p.D730G	ENST00000343455	NM_177438.2	730	gAt/gGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0037856-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			445	357	390	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0037856-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			319	209	506	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037856-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			515	113	482	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143130095	143130095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037856-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			196	36	312	0	ENST00000262992.4:c.921G>A	p.Met307Ile	p.M307I	ENST00000262992	NM_001101669.1	307	atG/atA																																																																															
NF1	4763	MSKCC	GRCh37	17	29652920	29652920	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037856-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			414	70	411	0	ENST00000358273.4:c.4918G>T	p.Glu1640Ter	p.E1640*	ENST00000358273	NM_001042492.2	1640	Gaa/Taa																																																																															
GATA1	2623	MSKCC	GRCh37	X	48649526	48649526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037856-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			489	68	466	0	ENST00000376670.3:c.10C>T	p.Pro4Ser	p.P4S	ENST00000376670	NM_002049.3	4	Cct/Tct																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424894	47424894	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037856-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			500	118	476	0	ENST00000404338.3:c.2962G>C	p.Asp988His	p.D988H	ENST00000404338	NM_004491.4	988	Gat/Cat																																																																															
MED12	9968	MSKCC	GRCh37	X	70354297	70354297	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037856-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			458	70	424	0	ENST00000374080.3:c.4708G>T	p.Val1570Phe	p.V1570F	ENST00000374080		1570	Gtc/Ttc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139397739	139397739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037856-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			552	113	520	0	ENST00000277541.6:c.5062G>A	p.Ala1688Thr	p.A1688T	ENST00000277541	NM_017617.3	1688	Gcc/Acc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166466	118166466	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750335875		P-0037856-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			476	337	547	0	ENST00000369448.3:c.976C>T	p.Arg326Cys	p.R326C	ENST00000369448	NM_017709.3	326	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs780442292		P-0080789-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			265	195	444	0	ENST00000269305.4:c.401T>G	p.Phe134Cys	p.F134C	ENST00000269305	NM_001126112.2	134	tTt/tGt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31376690	31376690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080789-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			311	31	385	0	ENST00000328111.2:c.685G>A	p.Val229Met	p.V229M	ENST00000328111	NM_006892.3	229	Gtg/Atg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0080789-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			526	39	414	0	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59858267	59858268	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs587778131		P-0080789-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			375	171	328	0	ENST00000259008.2:c.1727dup	p.Asn576LysfsTer2	p.N576Kfs*2	ENST00000259008	NM_032043.2	576	aat/aaAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0082406-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			465	49	450	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552822		P-0082406-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			346	43	363	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398282	+	missense_variant	Missense_Mutation	DNP	CC	CC	GG			P-0082406-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			305	15	226	0	ENST00000256078.4:c.37_38inv	p.Gly13Pro	p.G13P	ENST00000256078	NM_033360.2	13	GGc/CCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0083220-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			210	193	436	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0083220-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	153	343	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265344	152265344	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0083220-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			263	39	343	0	ENST00000206249.3:c.797A>C	p.Lys266Thr	p.K266T	ENST00000206249	NM_000125.3	266	aAa/aCa																																																																															
TRIP13	9319	MSKCC	GRCh37	5	914679	914679	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0083220-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			163	127	337	0	ENST00000166345.3:c.1121del	p.Asn374MetfsTer15	p.N374Mfs*15	ENST00000166345	NM_004237.3	374	Aat/at																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110662	8110662	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0083220-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			323	26	343	0	ENST00000585124.1:c.230T>A	p.Phe77Tyr	p.F77Y	ENST00000585124	NM_004217.3	77	tTt/tAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0085465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	176	518	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631102	69631102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121917704		P-0085465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	180	483	0	ENST00000334134.2:c.310C>T	p.Arg104Ter	p.R104*	ENST00000334134	NM_005247.2	104	Cga/Tga																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	106	434	0	ENST00000347630.2:c.260A>T	p.Tyr87Phe	p.Y87F	ENST00000347630	NM_001007230.1	87	tAc/tTc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89813084	89813084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs547984666		P-0085465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	40	444	0	ENST00000389301.3:c.3421G>A	p.Ala1141Thr	p.A1141T	ENST00000389301	NM_000135.2	1141	Gcc/Acc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131924558	131924558	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	116	363	0	ENST00000265335.6:c.1231G>C	p.Ala411Pro	p.A411P	ENST00000265335		411	Gcc/Ccc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845888	72845888	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	164	436	0	ENST00000268489.5:c.3579del	p.Lys1194AsnfsTer50	p.K1194Nfs*50	ENST00000268489	NM_006885.3	1193	tcC/tc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	319	426	0	ENST00000347630.2:c.304T>C	p.Phe102Leu	p.F102L	ENST00000347630	NM_001007230.1	102	Ttc/Ctc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178169	56178169	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0085963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	242	533	0	ENST00000399503.3:c.3142C>T	p.Gln1048Ter	p.Q1048*	ENST00000399503	NM_005921.1	1048	Cag/Tag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189448	56189448	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0085963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	187	465	0	ENST00000399503.3:c.4480C>T	p.Gln1494Ter	p.Q1494*	ENST00000399503	NM_005921.1	1494	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921539	178921540	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAACCTACGTGA			P-0085963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	62	360	0	ENST00000263967.3:c.1022_1033dup	p.Val344_Asn345insThrThrTyrVal	p.V344_N345insTTYV	ENST00000263967	NM_006218.2	341	gca/gCAACCTACGTGAca																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177784	56177785	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0085963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	102	518	0	ENST00000399503.3:c.2757_2758del	p.Lys919AsnfsTer10	p.K919Nfs*10	ENST00000399503	NM_005921.1	919	aaATtg/aatg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177920	56177920	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	255	619	0	ENST00000399503.3:c.2893C>A	p.Gln965Lys	p.Q965K	ENST00000399503	NM_005921.1	965	Cag/Aag																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955109	17955109	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140784576		P-0085964-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	29	570	0	ENST00000458235.1:c.118C>T	p.Arg40Cys	p.R40C	ENST00000458235	NM_000215.3	40	Cgc/Tgc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028883	47028883	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085964-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	23	219	0	ENST00000329236.7:c.187G>T	p.Glu63Ter	p.E63*	ENST00000329236	NM_001204466.1	63	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0085964-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	40	297	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016550	12016550	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0085964-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	25	322	0	ENST00000353533.5:c.686A>G	p.Asp229Gly	p.D229G	ENST00000353533	NM_003010.3	229	gAt/gGt																																																																															
MYC	4609	MSKCC	GRCh37	8	128753048	128753048	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085964-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	37	487	0	ENST00000377970.2:c.1209A>C	p.Glu403Asp	p.E403D	ENST00000377970	NM_002467.4	403	gaA/gaC																																																																															
NF1	4763	MSKCC	GRCh37	17	29496907	29496907	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0085965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	76	234	0	ENST00000358273.4:c.480-2A>T		p.X160_splice	ENST00000358273	NM_001042492.2	160																																																																																
PAK7	57144	MSKCC	GRCh37	20	9624840	9624840	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	128	483	0	ENST00000353224.5:c.137C>G	p.Thr46Arg	p.T46R	ENST00000353224	NM_177990.2	46	aCg/aGg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934885	9934885	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0085965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	46	466	0	ENST00000330684.3:c.1405A>T	p.Arg469Ter	p.R469*	ENST00000330684	NM_001134407.1	469	Aga/Tga																																																																															
EP300	2033	MSKCC	GRCh37	22	41547856	41547856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	116	415	0	ENST00000263253.7:c.2837G>A	p.Ser946Asn	p.S946N	ENST00000263253	NM_001429.3	946	aGc/aAc																																																																															
MSH3	4437	MSKCC	GRCh37	5	80083407	80083407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	29	407	0	ENST00000265081.6:c.2459C>T	p.Ser820Phe	p.S820F	ENST00000265081	NM_002439.4	820	tCc/tTc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146626	185146626	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	156	501	0	ENST00000265026.3:c.257A>T	p.Gln86Leu	p.Q86L	ENST00000265026	NM_004721.4	86	cAg/cTg																																																																															
SMO	6608	MSKCC	GRCh37	7	128845055	128845055	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	130	460	0	ENST00000249373.3:c.549G>T	p.Gln183His	p.Q183H	ENST00000249373	NM_005631.4	183	caG/caT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188823	32188823	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs8192585		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	168	434	0	ENST00000375023.3:c.731C>T	p.Ser244Leu	p.S244L	ENST00000375023	NM_004557.3	244	tCg/tTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	76	192	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951919	178951919	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	81	289	0	ENST00000263967.3:c.2974C>T	p.Arg992Ter	p.R992*	ENST00000263967	NM_006218.2	992	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913294		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	132	277	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845431	156845431	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144901788		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			731	377	517	0	ENST00000524377.1:c.1474G>A	p.Glu492Lys	p.E492K	ENST00000524377	NM_002529.3	492	Gag/Aag																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	86	351	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375168	31375168	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147591633		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	189	488	0	ENST00000328111.2:c.565G>A	p.Ala189Thr	p.A189T	ENST00000328111	NM_006892.3	189	Gcc/Acc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298003	15298003	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752404540		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	84	400	0	ENST00000263388.2:c.1753G>A	p.Glu585Lys	p.E585K	ENST00000263388	NM_000435.2	585	Gaa/Aaa																																																																															
ALK	238	MSKCC	GRCh37	2	29606679	29606679	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs865931787		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	129	326	0	ENST00000389048.3:c.1201C>T	p.Arg401Ter	p.R401*	ENST00000389048	NM_004304.4	401	Cga/Tga																																																																															
KIT	3815	MSKCC	GRCh37	4	55561827	55561827	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	137	344	0	ENST00000288135.5:c.217G>T	p.Glu73Ter	p.E73*	ENST00000288135	NM_000222.2	73	Gaa/Taa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337650	73337650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	137	320	0	ENST00000377767.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000377767	NM_014953.3	689	cGa/cAa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196170	138196170	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs587778710		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	171	380	0	ENST00000237289.4:c.484C>T	p.Arg162Trp	p.R162W	ENST00000237289	NM_001270507.1	162	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175945	112175945	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	164	367	0	ENST00000257430.4:c.4654G>T	p.Glu1552Ter	p.E1552*	ENST00000257430	NM_000038.5	1552	Gag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108172385	108172385	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs764389018		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	79	256	1	ENST00000278616.4:c.5188C>T	p.Arg1730Ter	p.R1730*	ENST00000278616	NM_000051.3	1730	Cga/Tga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16021323	16021323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	140	300	0	ENST00000268712.3:c.1934G>A	p.Arg645His	p.R645H	ENST00000268712	NM_006311.3	645	cGt/cAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42790944	42790944	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367972487		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	70	309	0	ENST00000575354.2:c.89G>A	p.Arg30His	p.R30H	ENST00000575354	NM_015125.3	30	cGc/cAc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374245	138374245	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	67	266	0	ENST00000289153.2:c.3199G>T	p.Asp1067Tyr	p.D1067Y	ENST00000289153	NM_006219.2	1067	Gac/Tac																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643768	52643768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	155	295	0	ENST00000394830.3:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000394830	NM_018313.4	710	Cga/Tga																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	194	357	0	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719580	61719580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	116	313	0	ENST00000401558.2:c.1603G>T	p.Asp535Tyr	p.D535Y	ENST00000401558	NM_003400.3	535	Gat/Tat																																																																															
ATM	472	MSKCC	GRCh37	11	108141873	108141873	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs538105098		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	119	264	0	ENST00000278616.4:c.2921C>T	p.Ser974Phe	p.S974F	ENST00000278616	NM_000051.3	974	tCc/tTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519945		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	167	319	0	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																																																															
RB1	5925	MSKCC	GRCh37	13	48953748	48953748	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759079385		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	66	163	0	ENST00000267163.4:c.1351C>T	p.Arg451Cys	p.R451C	ENST00000267163	NM_000321.2	451	Cgc/Tgc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36421162	36421162	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750755857		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	191	371	0	ENST00000300305.3:c.35C>T	p.Ser12Leu	p.S12L	ENST00000300305		12	tCg/tTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528608	157528608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	180	380	0	ENST00000346085.5:c.6333C>A	p.Phe2111Leu	p.F2111L	ENST00000346085	NM_020732.3	2111	ttC/ttA																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913023	32913023	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376338226		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	146	350	0	ENST00000380152.3:c.4531G>A	p.Glu1511Lys	p.E1511K	ENST00000380152		1511	Gaa/Aaa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161380	55161380	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376544204		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	133	318	0	ENST00000257290.5:c.3211G>A	p.Asp1071Asn	p.D1071N	ENST00000257290	NM_006206.4	1071	Gac/Aac																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864196	57864196	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs972690369		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			734	209	471	0	ENST00000228682.2:c.1673G>A	p.Arg558His	p.R558H	ENST00000228682	NM_005269.2	558	cGc/cAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	126	281	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																															
RAD21	5885	MSKCC	GRCh37	8	117875450	117875450	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	74	311	0	ENST00000297338.2:c.193C>T	p.Arg65Ter	p.R65*	ENST00000297338	NM_006265.2	65	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517847	187517847	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202133523		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	52	380	0	ENST00000441802.2:c.12847G>A	p.Glu4283Lys	p.E4283K	ENST00000441802	NM_005245.3	4283	Gaa/Aaa																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971370	13971370	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748346103		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	148	330	2	ENST00000405192.2:c.559C>T	p.Arg187Cys	p.R187C	ENST00000405192	NM_001163147.1	187	Cgc/Tgc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266828	198266828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs16865307		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	146	291	0	ENST00000335508.6:c.2104C>T	p.Arg702Trp	p.R702W	ENST00000335508	NM_012433.2	702	Cgg/Tgg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45651293	45651293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	62	344	0	ENST00000407780.3:c.732G>T	p.Glu244Asp	p.E244D	ENST00000407780	NM_001283052.1	244	gaG/gaT																																																																															
ALK	238	MSKCC	GRCh37	2	30142990	30142990	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1316424431		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	169	460	0	ENST00000389048.3:c.536G>A	p.Arg179His	p.R179H	ENST00000389048	NM_004304.4	179	cGc/cAc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524735	103524735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	85	322	0	ENST00000355739.4:c.2866G>A	p.Asp956Asn	p.D956N	ENST00000355739	NM_000123.3	956	Gac/Aac																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950648	38950648	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776074870		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	123	301	0	ENST00000357387.3:c.3302C>T	p.Ser1101Leu	p.S1101L	ENST00000357387	NM_152756.3	1101	tCg/tTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857020	9857020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	102	279	0	ENST00000330684.3:c.4381G>A	p.Glu1461Lys	p.E1461K	ENST00000330684	NM_001134407.1	1461	Gaa/Aaa																																																																															
HGF	3082	MSKCC	GRCh37	7	81355310	81355310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	101	289	1	ENST00000222390.5:c.1064G>A	p.Arg355Gln	p.R355Q	ENST00000222390	NM_000601.4	355	cGa/cAa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117718123	117718123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	108	290	0	ENST00000368508.3:c.734G>T	p.Arg245Ile	p.R245I	ENST00000368508	NM_002944.2	245	aGa/aTa																																																																															
CCND2	894	MSKCC	GRCh37	12	4409047	4409047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	138	297	0	ENST00000261254.3:c.742G>A	p.Glu248Lys	p.E248K	ENST00000261254	NM_001759.3	248	Gag/Aag																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589618	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519838		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	103	232	0	ENST00000274335.5:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000274335		461	Cga/Tga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685312	86685312	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	144	250	0	ENST00000274376.6:c.3028C>T	p.Arg1010Ter	p.R1010*	ENST00000274376	NM_002890.2	1010	Cga/Tga																																																																															
ARAF	369	MSKCC	GRCh37	X	47428244	47428244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	43	218	0	ENST00000377045.4:c.1204G>A	p.Asp402Asn	p.D402N	ENST00000377045	NM_001654.4	402	Gac/Aac																																																																															
KDR	3791	MSKCC	GRCh37	4	55958788	55958788	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780764266		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	128	235	0	ENST00000263923.4:c.3065G>A	p.Arg1022Gln	p.R1022Q	ENST00000263923	NM_002253.2	1022	cGa/cAa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518106	103518106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759972289		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	148	332	0	ENST00000355739.4:c.2044G>A	p.Glu682Lys	p.E682K	ENST00000355739	NM_000123.3	682	Gaa/Aaa																																																																															
KIT	3815	MSKCC	GRCh37	4	55599285	55599285	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777616126		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	85	300	0	ENST00000288135.5:c.2411G>A	p.Arg804Gln	p.R804Q	ENST00000288135	NM_000222.2	804	cGg/cAg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115751	8115751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	64	348	0	ENST00000346208.3:c.1097G>A	p.Arg366Gln	p.R366Q	ENST00000346208		366	cGa/cAa																																																																															
ATM	472	MSKCC	GRCh37	11	108115595	108115595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769166447		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	96	276	0	ENST00000278616.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000278616	NM_000051.3	248	cGa/cAa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609893	117609893	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771217753		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	106	320	0	ENST00000368508.3:c.6806G>A	p.Arg2269Gln	p.R2269Q	ENST00000368508	NM_002944.2	2269	cGa/cAa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275649	41275649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	167	323	0	ENST00000349496.5:c.1544G>A	p.Arg515Gln	p.R515Q	ENST00000349496	NM_001904.3	515	cGa/cAa																																																																															
AR	367	MSKCC	GRCh37	X	66905935	66905935	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1218564193		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	50	152	0	ENST00000374690.3:c.1852C>T	p.Arg618Trp	p.R618W	ENST00000374690	NM_000044.3	618	Cgg/Tgg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754575	57754575	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	134	268	0	ENST00000274289.3:c.472C>A	p.Leu158Ile	p.L158I	ENST00000274289	NM_006622.3	158	Ctc/Atc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66233097	66233097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	74	207	0	ENST00000273854.3:c.1902G>T	p.Lys634Asn	p.K634N	ENST00000273854	NM_004439.5	634	aaG/aaT																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246490640	246490640	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	125	240	0	ENST00000388985.4:c.395-1G>T		p.X132_splice	ENST00000388985		132																																																																																
LYN	4067	MSKCC	GRCh37	8	56912075	56912075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	124	271	0	ENST00000519728.1:c.1303G>A	p.Glu435Lys	p.E435K	ENST00000519728	NM_002350.3	435	Gaa/Aaa																																																																															
CD274	29126	MSKCC	GRCh37	9	5457399	5457399	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs897885359		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	155	295	0	ENST00000381577.3:c.373C>T	p.Arg125Ter	p.R125*	ENST00000381577	NM_014143.3	125	Cga/Tga																																																																															
SESN1	27244	MSKCC	GRCh37	6	109315802	109315802	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	55	291	1	ENST00000436639.2:c.983C>A	p.Ser328Tyr	p.S328Y	ENST00000436639	NM_014454.2	328	tCt/tAt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31410987	31410987	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1236254462		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	129	331	0	ENST00000344624.3:c.3533G>A	p.Arg1178Gln	p.R1178Q	ENST00000344624		1178	cGa/cAa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198262755	198262755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	126	305	0	ENST00000335508.6:c.3220C>T	p.Arg1074Cys	p.R1074C	ENST00000335508	NM_012433.2	1074	Cgt/Tgt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637786	176637786	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	62	380	0	ENST00000439151.2:c.2386G>T	p.Glu796Ter	p.E796*	ENST00000439151	NM_022455.4	796	Gaa/Taa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965644	93965644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	83	298	0	ENST00000369303.4:c.2284C>T	p.Arg762Cys	p.R762C	ENST00000369303	NM_004440.3	762	Cgc/Tgc																																																																															
RB1	5925	MSKCC	GRCh37	13	48954199	48954199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	71	161	0	ENST00000267163.4:c.1400G>A	p.Arg467Gln	p.R467Q	ENST00000267163	NM_000321.2	467	cGa/cAa																																																																															
BARD1	580	MSKCC	GRCh37	2	215645382	215645382	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs377153250		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	53	375	0	ENST00000260947.4:c.1216C>T	p.Arg406Ter	p.R406*	ENST00000260947	NM_000465.2	406	Cga/Tga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638731	176638731	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151165525		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	143	379	0	ENST00000439151.2:c.3331G>A	p.Asp1111Asn	p.D1111N	ENST00000439151	NM_022455.4	1111	Gat/Aat																																																																															
TET2	54790	MSKCC	GRCh37	4	106196349	106196349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	179	410	0	ENST00000380013.4:c.4682C>T	p.Ser1561Phe	p.S1561F	ENST00000380013	NM_001127208.2	1561	tCt/tTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845580	151845580	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1287135873		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	184	387	0	ENST00000262189.6:c.13432C>T	p.Arg4478Ter	p.R4478*	ENST00000262189	NM_170606.2	4478	Cga/Tga																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956522	93956522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	99	278	0	ENST00000369303.4:c.2714G>A	p.Gly905Glu	p.G905E	ENST00000369303	NM_004440.3	905	gGa/gAa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30108080	30108080	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1239799730		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	32	131	1	ENST00000331968.5:c.727C>T	p.Arg243Ter	p.R243*	ENST00000331968	NM_002742.2	243	Cga/Tga																																																																															
MET	4233	MSKCC	GRCh37	7	116418986	116418986	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199763277		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	150	279	0	ENST00000397752.3:c.3497G>A	p.Arg1166Gln	p.R1166Q	ENST00000397752	NM_000245.2	1166	cGa/cAa																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246498697	246498697	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143920876		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	178	275	0	ENST00000388985.4:c.308G>A	p.Arg103Gln	p.R103Q	ENST00000388985		103	cGa/cAa																																																																															
ATM	472	MSKCC	GRCh37	11	108196825	108196825	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	102	312	0	ENST00000278616.4:c.6848C>A	p.Ser2283Ter	p.S2283*	ENST00000278616	NM_000051.3	2283	tCa/tAa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090886	5090886	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	98	289	0	ENST00000381652.3:c.3034G>T	p.Glu1012Ter	p.E1012*	ENST00000381652	NM_004972.3	1012	Gaa/Taa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9547018	9547018	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11700112		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	102	339	0	ENST00000353224.5:c.1004G>A	p.Arg335Gln	p.R335Q	ENST00000353224	NM_177990.2	335	cGa/cAa																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121112	29121112	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs587782560		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	62	301	0	ENST00000328354.6:c.445G>A	p.Glu149Lys	p.E149K	ENST00000328354	NM_007194.3	149	Gaa/Aaa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131923668	131923668	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	87	239	0	ENST00000265335.6:c.938G>T	p.Arg313Ile	p.R313I	ENST00000265335		313	aGa/aTa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054648	5054648	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765286468		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	125	301	0	ENST00000381652.3:c.700C>T	p.Arg234Cys	p.R234C	ENST00000381652	NM_004972.3	234	Cgc/Tgc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528631	89528631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	66	278	0	ENST00000336596.2:c.2931G>T	p.Lys977Asn	p.K977N	ENST00000336596	NM_005233.5	977	aaG/aaT																																																																															
PREX2	80243	MSKCC	GRCh37	8	68950493	68950493	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760821149		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	83	272	0	ENST00000288368.4:c.805G>A	p.Asp269Asn	p.D269N	ENST00000288368	NM_024870.2	269	Gat/Aat																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19258560	19258560	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372543417		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	180	410	0	ENST00000162023.5:c.340C>T	p.Arg114Trp	p.R114W	ENST00000162023		114	Cgg/Tgg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230728	46230728	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	119	291	0	ENST00000334344.6:c.977C>A	p.Ser326Tyr	p.S326Y	ENST00000334344	NM_152641.2	326	tCt/tAt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123227989	123227989	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			83	115	112	0	ENST00000218089.9:c.3700G>T	p.Asp1234Tyr	p.D1234Y	ENST00000218089	NM_001042749.1	1234	Gat/Tat																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1327757	1327757	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1178003047		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	122	233	0	ENST00000381566.1:c.124G>A	p.Val42Met	p.V42M	ENST00000381566		42	Gtg/Atg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31431719	31431719	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	107	296	0	ENST00000344624.3:c.3109C>T	p.Arg1037Ter	p.R1037*	ENST00000344624		1037	Cga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261767	16261767	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759881159		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	200	418	0	ENST00000375759.3:c.9032G>A	p.Arg3011Gln	p.R3011Q	ENST00000375759	NM_015001.2	3011	cGa/cAa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100211	30100211	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	96	273	0	ENST00000331968.5:c.1409A>C	p.Glu470Ala	p.E470A	ENST00000331968	NM_002742.2	470	gAa/gCa																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145099	58145099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3211612		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	215	388	0	ENST00000257904.6:c.245G>A	p.Arg82Gln	p.R82Q	ENST00000257904	NM_000075.3	82	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112174893	112174893	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs730881247		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	146	375	0	ENST00000257430.4:c.3602C>A	p.Ser1201Ter	p.S1201*	ENST00000257430	NM_000038.5	1201	tCa/tAa																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68353772	68353772	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	38	266	1	ENST00000487270.1:c.607G>T	p.Gly203Ter	p.G203*	ENST00000487270	NM_133509.3	203	Gga/Tga																																																																															
MGA	23269	MSKCC	GRCh37	15	42058229	42058229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	77	311	0	ENST00000219905.7:c.7949G>A	p.Arg2650Gln	p.R2650Q	ENST00000219905	NM_001164273.1	2650	cGa/cAa																																																																															
FYN	2534	MSKCC	GRCh37	6	112024144	112024144	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs761344763		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	136	307	0	ENST00000368678.4:c.641A>G	p.Tyr214Cys	p.Y214C	ENST00000368678		214	tAc/tGc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701149	43701149	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756730049		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	165	367	0	ENST00000382044.4:c.5546G>A	p.Arg1849His	p.R1849H	ENST00000382044	NM_001141980.1	1849	cGt/cAt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99193462	99193462	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746015383		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	154	358	0	ENST00000074304.5:c.2657G>A	p.Arg886His	p.R886H	ENST00000074304	NM_001134224.1	886	cGc/cAc																																																																															
AXL	558	MSKCC	GRCh37	19	41726555	41726555	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	126	282	0	ENST00000301178.4:c.100G>T	p.Glu34Ter	p.E34*	ENST00000301178	NM_021913.4	34	Gaa/Taa																																																																															
BTK	695	MSKCC	GRCh37	X	100630191	100630191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	186	146	0	ENST00000308731.7:c.82C>T	p.Arg28Cys	p.R28C	ENST00000308731	NM_000061.2	28	Cgc/Tgc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098948	47098948	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs967982470		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	149	350	0	ENST00000409792.3:c.6326G>A	p.Arg2109Gln	p.R2109Q	ENST00000409792	NM_014159.6	2109	cGa/cAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29576111	29576111	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854560		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	151	298	0	ENST00000358273.4:c.4084C>T	p.Arg1362Ter	p.R1362*	ENST00000358273	NM_001042492.2	1362	Cga/Tga																																																																															
CTR9	9646	MSKCC	GRCh37	11	10789919	10789919	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1391585643		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	124	272	0	ENST00000361367.2:c.1990C>T	p.Arg664Cys	p.R664C	ENST00000361367	NM_014633.3	664	Cgt/Tgt																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748122	72748122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	59	301	0	ENST00000357731.5:c.56C>T	p.Ala19Val	p.A19V	ENST00000357731	NM_173808.2	19	gCg/gTg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423517	47423517	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	176	353	0	ENST00000404338.3:c.1585C>T	p.Arg529Ter	p.R529*	ENST00000404338	NM_004491.4	529	Cga/Tga																																																																															
MGA	23269	MSKCC	GRCh37	15	41988607	41988607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	152	354	0	ENST00000219905.7:c.1399C>T	p.Pro467Ser	p.P467S	ENST00000219905	NM_001164273.1	467	Cca/Tca																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349114	89349115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	184	439	0	ENST00000301030.4:c.3835dup	p.Ser1279LysfsTer4	p.S1279Kfs*4	ENST00000301030	NM_001256183.1	1279	agc/aAgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894365		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	77	230	2	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata																																																																															
ALK	238	MSKCC	GRCh37	2	29498359	29498359	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	98	306	0	ENST00000389048.3:c.1821C>A	p.Phe607Leu	p.F607L	ENST00000389048	NM_004304.4	607	ttC/ttA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187516852	187516852	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776855582		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	149	305	0	ENST00000441802.2:c.13129G>A	p.Asp4377Asn	p.D4377N	ENST00000441802	NM_005245.3	4377	Gat/Aat																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187117	38187117	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1481024329		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	186	362	0	ENST00000317025.8:c.1360C>T	p.Arg454Trp	p.R454W	ENST00000317025	NM_023034.1	454	Cgg/Tgg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127435	55127435	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	129	331	0	ENST00000257290.5:c.223G>T	p.Glu75Ter	p.E75*	ENST00000257290	NM_006206.4	75	Gaa/Taa																																																																															
RYBP	23429	MSKCC	GRCh37	3	72428210	72428210	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777422482		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	44	293	0	ENST00000477973.2:c.680G>A	p.Glu228Lys	p.E228K	ENST00000477973	NM_012234.5	228	Gaa/Aaa																																																																															
NF1	4763	MSKCC	GRCh37	17	29685536	29685536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1131691074		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	88	288	0	ENST00000358273.4:c.8009C>A	p.Ser2670Ter	p.S2670*	ENST00000358273	NM_001042492.2	2670	tCa/tAa																																																																															
NEGR1	257194	MSKCC	GRCh37	1	71873142	71873142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	38	308	0	ENST00000357731.5:c.1052C>T	p.Ala351Val	p.A351V	ENST00000357731	NM_173808.2	351	gCc/gTc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176132950	176132950	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs150041404		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	132	200	1	ENST00000367669.3:c.642+1G>A		p.X214_splice	ENST00000367669	NM_022457.5	214																																																																																
SMARCA2	6595	MSKCC	GRCh37	9	2056777	2056777	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	191	363	0	ENST00000349721.2:c.1279C>T	p.Arg427Cys	p.R427C	ENST00000349721	NM_003070.3	427	Cgc/Tgc																																																																															
NADK	65220	MSKCC	GRCh37	1	1685723	1685723	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	92	404	0	ENST00000341426.5:c.943G>A	p.Gly315Arg	p.G315R	ENST00000341426	NM_023018.4	315	Gga/Aga																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176105673	176105673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	108	201	0	ENST00000367669.3:c.842A>G	p.Gln281Arg	p.Q281R	ENST00000367669	NM_022457.5	281	cAg/cGg																																																																															
TET2	54790	MSKCC	GRCh37	4	106156285	106156285	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			772	222	434	0	ENST00000380013.4:c.1186A>G	p.Thr396Ala	p.T396A	ENST00000380013	NM_001127208.2	396	Acc/Gcc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517393	176517393	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	97	339	0	ENST00000292408.4:c.94C>T	p.Pro32Ser	p.P32S	ENST00000292408	NM_213647.1	32	Ccc/Tcc																																																																															
BLM	641	MSKCC	GRCh37	15	91346823	91346823	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	57	291	0	ENST00000355112.3:c.3431G>T	p.Arg1144Ile	p.R1144I	ENST00000355112	NM_000057.2	1144	aGa/aTa																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125513772	125513772	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	93	303	2	ENST00000428830.2:c.900C>A	p.Phe300Leu	p.F300L	ENST00000428830	NM_001114121.2	300	ttC/ttA																																																																															
NF1	4763	MSKCC	GRCh37	17	29683520	29683520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	85	267	0	ENST00000358273.4:c.7658C>T	p.Ala2553Val	p.A2553V	ENST00000358273	NM_001042492.2	2553	gCt/gTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29541484	29541484	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	25	88	0	ENST00000358273.4:c.1408G>T	p.Glu470Ter	p.E470*	ENST00000358273	NM_001042492.2	470	Gaa/Taa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18691164	18691164	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	95	265	0	ENST00000266497.5:c.3275T>G	p.Phe1092Cys	p.F1092C	ENST00000266497		1092	tTt/tGt																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281923	49281923	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	83	346	0	ENST00000282018.3:c.970C>A	p.His324Asn	p.H324N	ENST00000282018	NM_020377.2	324	Cat/Aat																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3799638	3799638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	48	142	0	ENST00000262367.5:c.3826G>T	p.Asp1276Tyr	p.D1276Y	ENST00000262367	NM_004380.2	1276	Gac/Tac																																																																															
SOS1	6654	MSKCC	GRCh37	2	39216423	39216423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	91	205	0	ENST00000402219.2:c.3379C>T	p.Pro1127Ser	p.P1127S	ENST00000402219	NM_005633.3	1127	Ccc/Tcc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28644708	28644708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	107	228	1	ENST00000241453.7:c.85G>T	p.Asp29Tyr	p.D29Y	ENST00000241453	NM_004119.2	29	Gat/Tat																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61308212	61308212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	88	168	0	ENST00000341074.5:c.365C>T	p.Ala122Val	p.A122V	ENST00000341074	NM_002974.2	122	gCc/gTc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7984098	7984098	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	151	412	0	ENST00000319144.4:c.528G>C	p.Glu176Asp	p.E176D	ENST00000319144	NM_001139.2	176	gaG/gaC																																																																															
TOP1	7150	MSKCC	GRCh37	20	39708813	39708813	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	81	273	0	ENST00000361337.2:c.424G>T	p.Glu142Ter	p.E142*	ENST00000361337	NM_003286.2	142	Gag/Tag																																																																															
TET1	80312	MSKCC	GRCh37	10	70404565	70404565	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	80	328	0	ENST00000373644.4:c.2079A>C	p.Glu693Asp	p.E693D	ENST00000373644	NM_030625.2	693	gaA/gaC																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38178633	38178633	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	106	267	0	ENST00000317025.8:c.1766A>C	p.Lys589Thr	p.K589T	ENST00000317025	NM_023034.1	589	aAa/aCa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67358612	67358612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	99	385	0	ENST00000327367.4:c.120G>T	p.Lys40Asn	p.K40N	ENST00000327367	NM_005902.3	40	aaG/aaT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11169500	11169500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	171	316	0	ENST00000344626.4:c.4570G>A	p.Asp1524Asn	p.D1524N	ENST00000344626	NM_003072.3	1524	Gac/Aac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858554	9858554	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	151	402	0	ENST00000330684.3:c.2847T>G	p.Phe949Leu	p.F949L	ENST00000330684	NM_001134407.1	949	ttT/ttG																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541415	187541415	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	45	401	0	ENST00000441802.2:c.6325G>T	p.Asp2109Tyr	p.D2109Y	ENST00000441802	NM_005245.3	2109	Gac/Tac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937396	32937396	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	154	343	0	ENST00000380152.3:c.8057T>G	p.Leu2686Arg	p.L2686R	ENST00000380152		2686	cTt/cGt																																																																															
EP300	2033	MSKCC	GRCh37	22	41553396	41553396	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	148	300	0	ENST00000263253.7:c.3485A>G	p.Tyr1162Cys	p.Y1162C	ENST00000263253	NM_001429.3	1162	tAc/tGc																																																																															
POT1	25913	MSKCC	GRCh37	7	124481101	124481101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772590775		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	78	259	0	ENST00000357628.3:c.1295G>A	p.Arg432Gln	p.R432Q	ENST00000357628	NM_015450.2	432	cGa/cAa																																																																															
SCG5	6447	MSKCC	GRCh37	15	32972012	32972012	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	151	334	0	ENST00000300175.4:c.272T>C	p.Ile91Thr	p.I91T	ENST00000300175	NM_001144757.1	91	aTc/aCc																																																																															
ATR	545	MSKCC	GRCh37	3	142168422	142168422	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	122	270	0	ENST00000350721.4:c.7784T>G	p.Ile2595Ser	p.I2595S	ENST00000350721	NM_001184.3	2595	aTt/aGt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286272	66286272	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	89	294	0	ENST00000273854.3:c.1414G>T	p.Val472Phe	p.V472F	ENST00000273854	NM_004439.5	472	Gtc/Ttc																																																																															
NF2	4771	MSKCC	GRCh37	22	30061002	30061002	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	69	269	0	ENST00000338641.4:c.834G>T	p.Lys278Asn	p.K278N	ENST00000338641	NM_000268.3	278	aaG/aaT																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740282	162740282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			781	82	425	0	ENST00000367921.3:c.1484C>T	p.Ala495Val	p.A495V	ENST00000367921	NM_006182.2	495	gCt/gTt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965463	68965463	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1206854674		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	98	375	0	ENST00000288368.4:c.1075G>T	p.Glu359Ter	p.E359*	ENST00000288368	NM_024870.2	359	Gaa/Taa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900741	3900741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			784	197	435	0	ENST00000262367.5:c.355G>A	p.Gly119Ser	p.G119S	ENST00000262367	NM_004380.2	119	Ggc/Agc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552903	106552903	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775868156		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	187	428	0	ENST00000369096.4:c.868G>A	p.Glu290Lys	p.E290K	ENST00000369096	NM_001198.3	290	Gaa/Aaa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30105599	30105599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	53	339	0	ENST00000331968.5:c.1087G>A	p.Ala363Thr	p.A363T	ENST00000331968	NM_002742.2	363	Gca/Aca																																																																															
MET	4233	MSKCC	GRCh37	7	116371768	116371768	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	143	252	0	ENST00000397752.3:c.1247A>G	p.Tyr416Cys	p.Y416C	ENST00000397752	NM_000245.2	416	tAt/tGt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913606	32913606	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	97	336	0	ENST00000380152.3:c.5114T>G	p.Ile1705Arg	p.I1705R	ENST00000380152		1705	aTa/aGa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671423	30671423	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	184	422	0	ENST00000376406.3:c.5537C>G	p.Thr1846Ser	p.T1846S	ENST00000376406	NM_014641.2	1846	aCt/aGt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955088	17955088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	148	367	0	ENST00000458235.1:c.139G>A	p.Asp47Asn	p.D47N	ENST00000458235	NM_000215.3	47	Gac/Aac																																																																															
CASP8	841	MSKCC	GRCh37	2	202141590	202141590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	67	295	0	ENST00000358485.4:c.878G>A	p.Gly293Glu	p.G293E	ENST00000358485	NM_001080125.1	293	gGa/gAa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43784628	43784628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	170	266	0	ENST00000382044.4:c.46G>T	p.Asp16Tyr	p.D16Y	ENST00000382044	NM_001141980.1	16	Gat/Tat																																																																															
MGA	23269	MSKCC	GRCh37	15	42042663	42042663	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	160	420	0	ENST00000219905.7:c.6858G>T	p.Glu2286Asp	p.E2286D	ENST00000219905	NM_001164273.1	2286	gaG/gaT																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31485064	31485064	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	83	245	0	ENST00000344624.3:c.1920T>G	p.Phe640Leu	p.F640L	ENST00000344624		640	ttT/ttG																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14317365	14317365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	113	234	0	ENST00000256196.4:c.145G>T	p.Asp49Tyr	p.D49Y	ENST00000256196		49	Gat/Tat																																																																															
NF1	4763	MSKCC	GRCh37	17	29490295	29490295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	137	278	0	ENST00000358273.4:c.380G>A	p.Gly127Glu	p.G127E	ENST00000358273	NM_001042492.2	127	gGa/gAa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867523	35867523	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	92	249	0	ENST00000303115.3:c.337G>T	p.Glu113Ter	p.E113*	ENST00000303115	NM_002185.3	113	Gaa/Taa																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257447	19257447	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	206	431	0	ENST00000162023.5:c.686A>G	p.Tyr229Cys	p.Y229C	ENST00000162023		229	tAc/tGc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21643307	21643307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	42	226	0	ENST00000421138.2:c.220C>T	p.Pro74Ser	p.P74S	ENST00000421138		74	Cca/Tca																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856140	111856140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	67	417	0	ENST00000341259.2:c.191C>T	p.Ser64Leu	p.S64L	ENST00000341259	NM_005475.2	64	tCg/tTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972768	25972768	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	153	316	0	ENST00000435504.4:c.1657G>T	p.Glu553Ter	p.E553*	ENST00000435504		553	Gaa/Taa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198281632	198281632	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	105	253	1	ENST00000335508.6:c.499G>T	p.Glu167Ter	p.E167*	ENST00000335508	NM_012433.2	167	Gaa/Taa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163518	47163518	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	73	333	0	ENST00000409792.3:c.2608T>G	p.Leu870Val	p.L870V	ENST00000409792	NM_014159.6	870	Tta/Gta																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110513	8110513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	81	347	0	ENST00000585124.1:c.379G>A	p.Glu127Lys	p.E127K	ENST00000585124	NM_004217.3	127	Gaa/Aaa																																																																															
ALB	213	MSKCC	GRCh37	4	74283987	74283987	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	129	301	0	ENST00000295897.4:c.1611A>G	p.Ile537Met	p.I537M	ENST00000295897	NM_000477.5	537	atA/atG																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260125	16260125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	224	472	0	ENST00000375759.3:c.7390G>A	p.Asp2464Asn	p.D2464N	ENST00000375759	NM_015001.2	2464	Gat/Aat																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902740	1902740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	108	389	0	ENST00000382895.3:c.359G>A	p.Gly120Asp	p.G120D	ENST00000382895	NM_133330.2	120	gGc/gAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255656	16255656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	88	382	0	ENST00000375759.3:c.2921G>A	p.Ser974Asn	p.S974N	ENST00000375759	NM_015001.2	974	aGt/aAt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89877139	89877139	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	54	275	0	ENST00000389301.3:c.498C>A	p.Phe166Leu	p.F166L	ENST00000389301	NM_000135.2	166	ttC/ttA																																																																															
USP8	9101	MSKCC	GRCh37	15	50757309	50757309	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	25	172	0	ENST00000307179.4:c.607G>T	p.Asp203Tyr	p.D203Y	ENST00000307179		203	Gat/Tat																																																																															
PGR	5241	MSKCC	GRCh37	11	100933238	100933238	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	106	329	0	ENST00000325455.5:c.2152C>A	p.Leu718Ile	p.L718I	ENST00000325455	NM_001202474.3	718	Ctt/Att																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082286	16082286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	157	361	0	ENST00000281043.3:c.100G>T	p.Asp34Tyr	p.D34Y	ENST00000281043	NM_005378.4	34	Gac/Tac																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59876600	59876600	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	129	297	0	ENST00000259008.2:c.1201T>G	p.Cys401Gly	p.C401G	ENST00000259008	NM_032043.2	401	Tgt/Ggt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670353	134670353	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	157	332	0	ENST00000398015.3:c.264G>T	p.Glu88Asp	p.E88D	ENST00000398015	NM_004441.4	88	gaG/gaT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545659	106545659	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	95	309	0	ENST00000359195.3:c.3136G>T	p.Glu1046Ter	p.E1046*	ENST00000359195	NM_002649.2	1046	Gaa/Taa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526711	106526711	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	123	322	0	ENST00000359195.3:c.3004A>G	p.Thr1002Ala	p.T1002A	ENST00000359195	NM_002649.2	1002	Aca/Gca																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33680076	33680076	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1321441845		P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	83	194	0	ENST00000308377.4:c.2005G>A	p.Glu669Lys	p.E669K	ENST00000308377	NM_152270.3	669	Gaa/Aaa																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690742	33690742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	177	343	0	ENST00000308377.4:c.85G>A	p.Glu29Lys	p.E29K	ENST00000308377	NM_152270.3	29	Gaa/Aaa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1952841	1952841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	173	324	0	ENST00000382895.3:c.1924G>A	p.Glu642Lys	p.E642K	ENST00000382895	NM_133330.2	642	Gaa/Aaa																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5549379	5549379	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	118	300	0	ENST00000397747.3:c.406A>T	p.Thr136Ser	p.T136S	ENST00000397747	NM_025239.3	136	Aca/Tca																																																																															
POT1	25913	MSKCC	GRCh37	7	124503412	124503412	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	89	252	0	ENST00000357628.3:c.538C>A	p.Leu180Ile	p.L180I	ENST00000357628	NM_015450.2	180	Ctt/Att																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851276	156851276	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	161	395	0	ENST00000524377.1:c.2233G>T	p.Glu745Ter	p.E745*	ENST00000524377	NM_002529.3	745	Gag/Tag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65323422	65323422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	157	403	0	ENST00000342505.4:c.1375G>A	p.Glu459Lys	p.E459K	ENST00000342505	NM_002227.2	459	Gag/Aag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153259085	153259085	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	72	274	0	ENST00000281708.4:c.730T>G	p.Trp244Gly	p.W244G	ENST00000281708	NM_033632.3	244	Tgg/Ggg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552745	18552745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	82	325	0	ENST00000266497.5:c.2156C>T	p.Ser719Phe	p.S719F	ENST00000266497		719	tCt/tTt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965674	25965674	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	172	345	0	ENST00000435504.4:c.3532G>T	p.Glu1178Ter	p.E1178*	ENST00000435504		1178	Gaa/Taa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68930099	68930099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	116	273	0	ENST00000288368.4:c.160A>G	p.Asn54Asp	p.N54D	ENST00000288368	NM_024870.2	54	Aac/Gac																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30047549	30047549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	54	195	0	ENST00000331968.5:c.2452A>G	p.Asn818Asp	p.N818D	ENST00000331968	NM_002742.2	818	Aat/Gat																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939857	71939857	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	208	478	0	ENST00000298229.2:c.484G>T	p.Ala162Ser	p.A162S	ENST00000298229	NM_001567.3	162	Gct/Tct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0085977-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	53	345	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0086110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			342	128	533	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	16	465	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0086110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			182	84	305	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554630	63554630	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0086110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			475	121	552	0	ENST00000307078.5:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000307078	NM_004655.3	37	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175466	112175466	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs786204170		P-0086110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	77	505	0	ENST00000257430.4:c.4175C>A	p.Ser1392Ter	p.S1392*	ENST00000257430	NM_000038.5	1392	tCa/tAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593505	48593505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			367	8	357	0	ENST00000342988.3:c.1256G>T	p.Gly419Val	p.G419V	ENST00000342988	NM_005359.5	419	gGg/gTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045656	47045656	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0086110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			386	128	568	0	ENST00000329236.7:c.2304-1G>C		p.X768_splice	ENST00000329236	NM_001204466.1	768																																																																																
HIST1H3C	8352	MSKCC	GRCh37	6	26045748	26045748	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0086110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			583	157	578	0	ENST00000540144.1:c.110A>T	p.Lys37Met	p.K37M	ENST00000540144	NM_003531.2	37	aAg/aTg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0086111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	24	467	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0086111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	31	469	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0086111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	467	505	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714631	52714631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	218	553	1	ENST00000322088.6:c.389C>T	p.Pro130Leu	p.P130L	ENST00000322088	NM_014225.5	130	cCg/cTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411276	63411276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0086111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	262	303	0	ENST00000330258.3:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000330258	NM_152424.3	631	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478928	56478928	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	254	453	0	ENST00000267101.3:c.384C>G	p.Ser128Arg	p.S128R	ENST00000267101	NM_001982.3	128	agC/agG																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962788	2962788	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201948130		P-0086111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	127	358	0	ENST00000396946.4:c.2120G>A	p.Arg707His	p.R707H	ENST00000396946	NM_032415.4	707	cGt/cAt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88669526	88669526	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0086111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	176	389	0	ENST00000360948.2:c.1372C>T	p.Arg458Ter	p.R458*	ENST00000360948	NM_001012338.2	458	Cga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048638	180048638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	170	535	0	ENST00000261937.6:c.1924C>T	p.Arg642Cys	p.R642C	ENST00000261937	NM_182925.4	642	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0086111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	140	305	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0086130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	29	364	1	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55136826	55136826	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1368411882		P-0086130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	13	257	0	ENST00000257290.5:c.1148G>A	p.Arg383His	p.R383H	ENST00000257290	NM_006206.4	383	cGt/cAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913079	32913080	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs745456776		P-0086130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	20	357	0	ENST00000380152.3:c.4593dup	p.Val1532SerfsTer2	p.V1532Sfs*2	ENST00000380152		1529	-/A																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0086130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	22	275	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MGA	23269	MSKCC	GRCh37	15	41961930	41961930	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0086130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	20	356	0	ENST00000219905.7:c.838G>T	p.Glu280Ter	p.E280*	ENST00000219905	NM_001164273.1	280	Gaa/Taa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117784	70117785	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GACTG			P-0086130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	23	367	0	ENST00000245479.2:c.256_260dup	p.Leu88GlyfsTer24	p.L88Gfs*24	ENST00000245479	NM_000346.3	84	-/GACTG																																																																															
RRAS	6237	MSKCC	GRCh37	19	50139971	50139971	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	26	337	0	ENST00000246792.3:c.358G>T	p.Gly120Cys	p.G120C	ENST00000246792	NM_006270.3	120	Ggc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0086162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			64	13	216	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	19	463	0	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372254	55372254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1358462345		P-0086162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	44	585	0	ENST00000297316.4:c.944C>T	p.Pro315Leu	p.P315L	ENST00000297316	NM_022454.3	315	cCg/cTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168749	56168749	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0086162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	66	442	0	ENST00000399503.3:c.1603C>T	p.Gln535Ter	p.Q535*	ENST00000399503	NM_005921.1	535	Caa/Taa																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733113	74733113	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	54	497	0	ENST00000359995.5:c.130T>C	p.Tyr44His	p.Y44H	ENST00000359995	NM_001195427.1	44	Tac/Cac																																																																															
APC	324	MSKCC	GRCh37	5	112175863	112175863	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0086162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	65	536	0	ENST00000257430.4:c.4573del	p.Met1525CysfsTer40	p.M1525Cfs*40	ENST00000257430	NM_000038.5	1524	atA/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0086162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	68	309	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041528	14041528	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777853585		P-0086162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	37	417	0	ENST00000311895.7:c.2075G>A	p.Arg692Gln	p.R692Q	ENST00000311895	NM_005236.2	692	cGa/cAa																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230493014	230493014	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	19	511	0	ENST00000525115.1:c.178T>C	p.Phe60Leu	p.F60L	ENST00000525115		60	Ttt/Ctt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99456425	99456425	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0086162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	13	519	0	ENST00000268035.6:c.1742T>G	p.Val581Gly	p.V581G	ENST00000268035	NM_000875.3	581	gTc/gGc																																																																															
APC	324	MSKCC	GRCh37	5	112173591	112173591	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0086162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	42	492	0	ENST00000257430.4:c.2300del	p.Gln767ArgfsTer10	p.Q767Rfs*10	ENST00000257430	NM_000038.5	767	cAg/cg																																																																															
CDH1	999	MSKCC	GRCh37	16	68857346	68857346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	24	465	0	ENST00000261769.5:c.1981G>A	p.Gly661Ser	p.G661S	ENST00000261769	NM_004360.3	661	Ggt/Agt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	-	rs121913425		P-0085115-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			493	207	374	0	ENST00000275493.2:c.2237_2251del	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577076	7577097	+	frameshift_variant	Frame_Shift_Del	DEL	TCTCTTCCTCTGTGCGCCGGTC	TCTCTTCCTCTGTGCGCCGGTC	-			P-0085115-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			695	16	522	0	ENST00000269305.4:c.841_862del	p.Asp281IlefsTer57	p.D281Ifs*57	ENST00000269305	NM_001126112.2	281	GACCGGCGCACAGAGGAAGAGAat/at																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0085636-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			672	430	414	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0085636-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			453	273	319	2	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
ATM	472	MSKCC	GRCh37	11	108129764	108129764	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0085636-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			259	188	288	1	ENST00000278616.4:c.2428A>T	p.Lys810Ter	p.K810*	ENST00000278616	NM_000051.3	810	Aag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575116	48575119	+	missense_variant	Missense_Mutation	ONP	CTTC	CTTC	TTTT			P-0085636-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			218	90	305	0	ENST00000342988.3:c.310_313delinsTTTT	p.Leu104_His105delinsPheTyr	p.L104_H105delinsFY	ENST00000342988	NM_005359.5	104	CTTCac/TTTTac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212587244	212587244	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085636-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	78	372	0	ENST00000342788.4:c.757A>G	p.Asn253Asp	p.N253D	ENST00000342788	NM_005235.2	253	Aat/Gat																																																																															
MGA	23269	MSKCC	GRCh37	15	42003420	42003436	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGCTTGTCTAAATCT	CAGGCTTGTCTAAATCT	-			P-0085636-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	181	430	1	ENST00000219905.7:c.2961_2977del	p.Leu988GlufsTer41	p.L988Efs*41	ENST00000219905	NM_001164273.1	986	cCAGGCTTGTCTAAATCT/c																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967922	93967922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085636-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			310	83	354	0	ENST00000369303.4:c.2005G>T	p.Val669Phe	p.V669F	ENST00000369303	NM_004440.3	669	Gtt/Ttt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0085645-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			282	211	358	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057520006		P-0085645-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	172	370	0	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025856	48025857	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0085645-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			409	172	342	0	ENST00000234420.5:c.741dup	p.Arg248ThrfsTer8	p.R248Tfs*8	ENST00000234420	NM_000179.2	245	ata/atAa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971122	21971123	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0085645-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			354	214	569	0	ENST00000304494.5:c.235_236del	p.Thr79ProfsTer40	p.T79Pfs*40	ENST00000304494	NM_000077.4	79	ACc/c																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0085645-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			304	180	202	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859450	151859450	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0085645-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			527	220	394	2	ENST00000262189.6:c.11212G>T	p.Glu3738Ter	p.E3738*	ENST00000262189	NM_170606.2	3738	Gaa/Taa																																																																															
MGA	23269	MSKCC	GRCh37	15	42028841	42028841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	258	465	0	ENST00000219905.7:c.4379G>A	p.Gly1460Glu	p.G1460E	ENST00000219905	NM_001164273.1	1460	gGg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578175	7578175	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0085765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	26	452	0	ENST00000269305.4:c.672+2T>C		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
RBM10	8241	MSKCC	GRCh37	X	47039883	47039883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	22	279	0	ENST00000329236.7:c.992C>A	p.Ala331Glu	p.A331E	ENST00000329236	NM_001204466.1	331	gCg/gAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0085765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	19	238	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584795	48584807	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCTATGCCG	CCCGCCTATGCCG	-			P-0085765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	38	378	0	ENST00000342988.3:c.876_888del	p.Pro293IlefsTer39	p.P293Ifs*39	ENST00000342988	NM_005359.5	291	caCCCGCCTATGCCG/ca																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46281788	46281788	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	99	399	0	ENST00000371998.3:c.4235T>C	p.Met1412Thr	p.M1412T	ENST00000371998		1412	aTg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0086014-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	174	387	1	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250119	110250119	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086014-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	163	428	2	ENST00000374672.4:c.556A>T	p.Asn186Tyr	p.N186Y	ENST00000374672	NM_004235.4	186	Aac/Tac																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508903	106508903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086014-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	200	507	0	ENST00000359195.3:c.897C>A	p.Asn299Lys	p.N299K	ENST00000359195	NM_002649.2	299	aaC/aaA																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519920		P-0086014-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	211	288	0	ENST00000397062.3:c.85G>A	p.Asp29Asn	p.D29N	ENST00000397062	NM_006164.4	29	Gat/Aat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540539	187540539	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0086014-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	472	487	0	ENST00000441802.2:c.7201G>T	p.Glu2401Ter	p.E2401*	ENST00000441802	NM_005245.3	2401	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440544	49440544	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0086014-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	486	489	0	ENST00000301067.7:c.4266G>A	p.Trp1422Ter	p.W1422*	ENST00000301067	NM_003482.3	1422	tgG/tgA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873671	151873671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086014-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	229	525	0	ENST00000262189.6:c.8867C>T	p.Pro2956Leu	p.P2956L	ENST00000262189	NM_170606.2	2956	cCt/cTt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5246038	5246038	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086014-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	152	459	0	ENST00000357368.4:c.737G>T	p.Arg246Leu	p.R246L	ENST00000357368	NM_002850.3	246	cGc/cTc																																																																															
TET2	54790	MSKCC	GRCh37	4	106156409	106156410	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0086014-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	213	475	0	ENST00000380013.4:c.1314dup	p.Asn439GlnfsTer4	p.N439Qfs*4	ENST00000380013	NM_001127208.2	437	tac/taCc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874341	151874341	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086014-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	177	362	0	ENST00000262189.6:c.8197G>C	p.Asp2733His	p.D2733H	ENST00000262189	NM_170606.2	2733	Gat/Cat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593435	48593435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086014-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	201	360	0	ENST00000342988.3:c.1186G>A	p.Asp396Asn	p.D396N	ENST00000342988	NM_005359.5	396	Gat/Aat																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45872390	45872390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086014-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	185	423	0	ENST00000391945.4:c.121G>C	p.Glu41Gln	p.E41Q	ENST00000391945	NM_000400.3	41	Gag/Cag																																																																															
MGA	23269	MSKCC	GRCh37	15	42054471	42054471	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086014-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	194	281	0	ENST00000219905.7:c.7655C>G	p.Ser2552Cys	p.S2552C	ENST00000219905	NM_001164273.1	2552	tCt/tGt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40710541	40710541	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086014-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	156	336	0	ENST00000373198.4:c.4310C>A	p.Ser1437Tyr	p.S1437Y	ENST00000373198	NM_133170.3	1437	tCc/tAc																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031971	26031971	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086014-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	225	562	0	ENST00000244661.2:c.318G>T	p.Glu106Asp	p.E106D	ENST00000244661	NM_003537.3	106	gaG/gaT																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742130	145742130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086014-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	210	443	0	ENST00000428558.2:c.373C>A	p.Arg125Ser	p.R125S	ENST00000428558	NM_004260.3	125	Cgc/Agc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0086087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	74	373	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0086087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	31	402	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0086087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	87	428	0	ENST00000257430.4:c.4473dup	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0086087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	36	282	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856340	111856340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	111	333	0	ENST00000341259.2:c.391G>A	p.Gly131Arg	p.G131R	ENST00000341259	NM_005475.2	131	Ggg/Agg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120141	70120142	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0086087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	211	280	0	ENST00000245479.2:c.1144_1145dup	p.Thr383Ter	p.T383*	ENST00000245479	NM_000346.3	381	-/CT																																																																															
SESN1	27244	MSKCC	GRCh37	6	109315712	109315712	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0086087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			73	102	305	0	ENST00000436639.2:c.1073C>G	p.Ser358Ter	p.S358*	ENST00000436639	NM_014454.2	358	tCa/tGa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs879255270		P-0086090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			714	110	379	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111921737	111921737	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1170116948		P-0086090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	78	254	0	ENST00000393256.3:c.526G>A	p.Glu176Lys	p.E176K	ENST00000393256	NM_006538.4	176	Gaa/Aaa																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538882	23538882	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1254712780		P-0086090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	100	360	0	ENST00000380871.4:c.557C>T	p.Ser186Leu	p.S186L	ENST00000380871	NM_006167.3	186	tCg/tTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624255	89624255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	63	106	0	ENST00000371953.3:c.29G>A	p.Ser10Asn	p.S10N	ENST00000371953	NM_000314.4	10	aGc/aAc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227949	53227949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			745	108	401	0	ENST00000375401.3:c.2365C>T	p.Arg789Cys	p.R789C	ENST00000375401	NM_004187.3	789	Cgc/Tgc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245373	153245373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	80	318	0	ENST00000281708.4:c.1818G>T	p.Trp606Cys	p.W606C	ENST00000281708	NM_033632.3	606	tgG/tgT																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589616	67589618	+	inframe_deletion	In_Frame_Del	DEL	GTC	GTC	-			P-0086090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	62	257	0	ENST00000274335.5:c.1380_1382del	p.Ser460del	p.S460del	ENST00000274335		460	aGTCga/aga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554466	63554467	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCGTCTTGATCGCCCAATAAG			P-0086090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			838	81	465	0	ENST00000307078.5:c.252_272dup	p.Leu85_Gly91dup	p.L85_G91dup	ENST00000307078	NM_004655.3	85	ggt/ggCTTATTGGGCGATCAAGACGGt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149452957	149452957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	71	335	0	ENST00000286301.3:c.989G>A	p.Gly330Asp	p.G330D	ENST00000286301	NM_005211.3	330	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0086091-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	133	423	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0086091-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	62	251	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112176030	112176030	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0086091-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	235	385	0	ENST00000257430.4:c.4741del	p.Ser1581LeufsTer69	p.S1581Lfs*69	ENST00000257430	NM_000038.5	1580	aTt/at																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468309	50468309	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1159541845		P-0086091-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	102	319	0	ENST00000331340.3:c.1544G>A	p.Arg515His	p.R515H	ENST00000331340	NM_006060.4	515	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0086091-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	59	243	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604746	48604746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086091-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	129	340	0	ENST00000342988.3:c.1568G>A	p.Cys523Tyr	p.C523Y	ENST00000342988	NM_005359.5	523	tGc/tAc																																																																															
IRF4	3662	MSKCC	GRCh37	6	401472	401485	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTGACCACGTCC	AGCTGACCACGTCC	-			P-0086091-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	24	369	0	ENST00000380956.4:c.797_810del	p.Leu266ProfsTer13	p.L266Pfs*13	ENST00000380956	NM_001195286.1	265	gAGCTGACCACGTCC/g																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944797	31944797	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086091-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	106	304	0	ENST00000340398.3:c.304G>T	p.Gly102Cys	p.G102C	ENST00000340398	NM_001013699.2	102	Ggt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	160	363	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs769210858		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	36	349	0	ENST00000361632.4:c.1404del	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46725734	46725734	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	175	354	0	ENST00000371975.4:c.374del	p.Pro125ArgfsTer2	p.P125Rfs*2	ENST00000371975	NM_003579.3	124	Ccc/cc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72076826	72076826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	162	297	0	ENST00000357731.5:c.671C>A	p.Ala224Asp	p.A224D	ENST00000357731	NM_173808.2	224	gCt/gAt																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	204	352	0	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																																																															
BCL10	8915	MSKCC	GRCh37	1	85736510	85736511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs387906351		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	103	343	1	ENST00000370580.1:c.136dup	p.Ile46AsnfsTer4	p.I46Nfs*4	ENST00000370580	NM_003921.4	46	ata/aAta																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63810751	63810751	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143185576		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	147	233	0	ENST00000279873.7:c.838G>A	p.Val280Ile	p.V280I	ENST00000279873	NM_032199.2	280	Gtt/Att																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106073	8106073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	139	309	0	ENST00000346208.3:c.893G>A	p.Arg298Gln	p.R298Q	ENST00000346208		298	cGg/cAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	38	183	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	30	237	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	89	327	4	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	166	330	0	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
POLE	5426	MSKCC	GRCh37	12	133253148	133253148	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	130	231	0	ENST00000320574.5:c.893A>G	p.Tyr298Cys	p.Y298C	ENST00000320574	NM_006231.2	298	tAc/tGc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	114	284	1	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944961	31944961	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1441610501		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	173	287	0	ENST00000340398.3:c.140C>T	p.Ala47Val	p.A47V	ENST00000340398	NM_001013699.2	47	gCg/gTg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416952	416953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs771545848		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	164	346	2	ENST00000399788.2:c.3597dup	p.Gly1200ArgfsTer7	p.G1200Rfs*7	ENST00000399788	NM_001042603.1	1199	-/A																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434054	49434054	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369604891		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	45	398	0	ENST00000301067.7:c.7499C>T	p.Ala2500Val	p.A2500V	ENST00000301067	NM_003482.3	2500	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	52	398	1	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489534	56489534	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775164134		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	194	309	0	ENST00000267101.3:c.1999C>T	p.Arg667Cys	p.R667C	ENST00000267101	NM_001982.3	667	Cgt/Tgt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43730536	43730536	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			661	50	279	0	ENST00000382044.4:c.3177del	p.Thr1060ProfsTer36	p.T1060Pfs*36	ENST00000382044	NM_001141980.1	1059	ccC/cc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473648	67473648	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223736		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	164	280	0	ENST00000327367.4:c.728G>A	p.Arg243His	p.R243H	ENST00000327367	NM_005902.3	243	cGc/cAc																																																																															
BLM	641	MSKCC	GRCh37	15	91292842	91292842	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371100621		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	158	344	0	ENST00000355112.3:c.344C>T	p.Pro115Leu	p.P115L	ENST00000355112	NM_000057.2	115	cCg/cTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632599	3632599	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745421287		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	37	365	0	ENST00000294008.3:c.5249C>T	p.Ala1750Val	p.A1750V	ENST00000294008	NM_032444.2	1750	gCg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781375	3781375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	41	385	0	ENST00000262367.5:c.4990C>T	p.Arg1664Cys	p.R1664C	ENST00000262367	NM_004380.2	1664	Cgc/Tgc																																																																															
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	197	374	2	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346158	89346158	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	172	382	0	ENST00000301030.4:c.6792del	p.Ala2265ProfsTer72	p.A2265Pfs*72	ENST00000301030	NM_001256183.1	2264	ccC/cc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89352560	89352560	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768058427		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	155	275	0	ENST00000301030.4:c.779C>T	p.Pro260Leu	p.P260L	ENST00000301030	NM_001256183.1	260	cCg/cTg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	154	307	2	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	405	473	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	81	258	1	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	77	297	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	237	360	0	ENST00000269305.4:c.880del	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	294	Gag/ag																																																																															
STK11	6794	MSKCC	GRCh37	19	1223054	1223054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	185	409	0	ENST00000326873.7:c.991C>T	p.Arg331Trp	p.R331W	ENST00000326873	NM_000455.4	331	Cgg/Tgg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276861	15276861	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			753	65	421	1	ENST00000263388.2:c.5404del	p.Ala1802LeufsTer23	p.A1802Lfs*23	ENST00000263388	NM_000435.2	1802	Gct/ct																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15308383	15308383	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	149	343	0	ENST00000263388.2:c.125del	p.Pro42LeufsTer194	p.P42Lfs*194	ENST00000263388	NM_000435.2	42	cCt/ct																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	77	265	1	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																																																															
AKT2	208	MSKCC	GRCh37	19	40741870	40741870	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144444132		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	191	426	0	ENST00000392038.2:c.1102C>T	p.Arg368Cys	p.R368C	ENST00000392038	NM_001626.4	368	Cgc/Tgc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	200	399	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
CIC	23152	MSKCC	GRCh37	19	42794499	42794499	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	71	404	1	ENST00000575354.2:c.1579G>T	p.Gly527Cys	p.G527C	ENST00000575354	NM_015125.3	527	Ggc/Tgc																																																																															
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	211	400	1	ENST00000575354.2:c.3743del	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45856051	45856051	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	40	316	1	ENST00000391945.4:c.1855A>G	p.Ile619Val	p.I619V	ENST00000391945	NM_000400.3	619	Atc/Gtc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503884	47503884	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	245	278	1	ENST00000404338.3:c.4444del	p.Gln1482SerfsTer317	p.Q1482Sfs*317	ENST00000404338	NM_004491.4	1480	aCc/ac																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231449	5231449	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	166	312	0	ENST00000357368.4:c.2027del	p.Pro676ArgfsTer134	p.P676Rfs*134	ENST00000357368	NM_002850.3	676	cCg/cg																																																																															
ACVR1	90	MSKCC	GRCh37	2	158637067	158637068	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA	rs1428881481		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	336	352	0	ENST00000263640.3:c.111_112dup	p.Glu38ValfsTer21	p.E38Vfs*21	ENST00000263640	NM_001105.4	38	gaa/gTGaa																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	36	391	1	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403206	213403206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	125	257	0	ENST00000342788.4:c.49G>A	p.Ala17Thr	p.A17T	ENST00000342788	NM_005235.2	17	Gcg/Acg																																																																															
REL	5966	MSKCC	GRCh37	2	61149089	61149089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	222	378	0	ENST00000295025.8:c.1279C>A	p.Pro427Thr	p.P427T	ENST00000295025	NM_002908.2	427	Cca/Aca																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31016154	31016154	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777619874		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	187	314	0	ENST00000375687.4:c.400G>A	p.Ala134Thr	p.A134T	ENST00000375687	NM_015338.5	134	Gca/Aca																																																																															
TOP1	7150	MSKCC	GRCh37	20	39728847	39728847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	160	319	0	ENST00000361337.2:c.1127G>A	p.Arg376Gln	p.R376Q	ENST00000361337	NM_003286.2	376	cGa/cAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713340	40713340	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1272852268		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	198	343	1	ENST00000373198.4:c.4175G>A	p.Arg1392His	p.R1392H	ENST00000373198	NM_133170.3	1392	cGt/cAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	135	305	1	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21336681	21336681	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1366986114		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	151	329	0	ENST00000215739.8:c.27del	p.Gln10ArgfsTer15	p.Q10Rfs*15	ENST00000215739	NM_006767.3	7	acG/ac																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445998	29445999	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	129	369	0	ENST00000544604.2:c.1835dup	p.Ser613LeufsTer68	p.S613Lfs*68	ENST00000544604	NM_001206998.1	610	gcg/gcGg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138382756	138382756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	132	232	1	ENST00000289153.2:c.2788del	p.Thr930LeufsTer62	p.T930Lfs*62	ENST00000289153	NM_006219.2	930	Act/ct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	148	281	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52677264	52677264	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs748174546		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	167	239	0	ENST00000394830.3:c.995G>A	p.Arg332His	p.R332H	ENST00000394830	NM_018313.4	332	cGt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	162	290	0	ENST00000281708.4:c.1634A>T	p.Tyr545Phe	p.Y545F	ENST00000281708	NM_033632.3	545	tAt/tTt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808311	1808312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	203	504	0	ENST00000260795.2:c.2075dup	p.Ser693LeufsTer124	p.S693Lfs*124	ENST00000260795		690	ctg/ctGg																																																																															
REST	5978	MSKCC	GRCh37	4	57796354	57796355	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	138	320	0	ENST00000309042.7:c.1336dup	p.Thr446AsnfsTer18	p.T446Nfs*18	ENST00000309042	NM_005612.4	444	gaa/gAaa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149499679	149499679	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	128	246	0	ENST00000261799.4:c.2594del	p.Leu865CysfsTer3	p.L865Cfs*3	ENST00000261799	NM_002609.3	865	tTg/tg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	117	250	0	ENST00000303115.3:c.361del	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38982115	38982115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	120	274	0	ENST00000357387.3:c.607G>A	p.Ala203Thr	p.A203T	ENST00000357387	NM_152756.3	203	Gcc/Acc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	270	248	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
PARK2	5071	MSKCC	GRCh37	6	161781122	161781122	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	53	256	1	ENST00000366898.1:c.1283del	p.Asn428MetfsTer7	p.N428Mfs*7	ENST00000366898	NM_004562.2	428	aAt/at																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675170	30675172	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs1472156046		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	148	336	0	ENST00000376406.3:c.3073_3075del	p.Lys1025del	p.K1025del	ENST00000376406	NM_014641.2	1025	AAG/-																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120579	94120579	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	148	332	0	ENST00000369303.4:c.472G>T	p.Gly158Cys	p.G158C	ENST00000369303	NM_004440.3	158	Ggt/Tgt																																																																															
POT1	25913	MSKCC	GRCh37	7	124532409	124532409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	63	219	0	ENST00000357628.3:c.35C>T	p.Thr12Ile	p.T12I	ENST00000357628	NM_015450.2	12	aCa/aTa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	132	220	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	157	236	0	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737596	145737596	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs773143092		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			796	76	489	0	ENST00000428558.2:c.3167A>G	p.Tyr1056Cys	p.Y1056C	ENST00000428558	NM_004260.3	1056	tAt/tGt																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	116	248	1	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
CD274	29126	MSKCC	GRCh37	9	5462929	5462929	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146495642		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	179	315	0	ENST00000381577.3:c.490G>A	p.Glu164Lys	p.E164K	ENST00000381577	NM_014143.3	164	Gaa/Aaa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923699	39923699	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758883383		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	193	193	0	ENST00000378444.4:c.3392G>A	p.Arg1131Gln	p.R1131Q	ENST00000378444	NM_001123385.1	1131	cGg/cAg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932085	39932085	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	31	198	0	ENST00000378444.4:c.2514del	p.Lys839SerfsTer17	p.K839Sfs*17	ENST00000378444	NM_001123385.1	838	ccC/cc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	147	164	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
AR	367	MSKCC	GRCh37	X	66765589	66765589	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs770573613		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	149	201	0	ENST00000374690.3:c.601G>T	p.Ala201Ser	p.A201S	ENST00000374690	NM_000044.3	201	Gca/Tca																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740125	162740125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	195	299	0	ENST00000367921.3:c.1327G>A	p.Val443Ile	p.V443I	ENST00000367921	NM_006182.2	443	Gtc/Atc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246091337	246091337	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	125	238	0	ENST00000388985.4:c.600-2A>T		p.X200_splice	ENST00000388985		200																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114910849	114910849	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761420878		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			770	65	351	0	ENST00000543371.1:c.968C>T	p.Ser323Leu	p.S323L	ENST00000543371	NM_001198531.1	323	tCg/tTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097670	8097670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	145	310	0	ENST00000346208.3:c.52G>A	p.Val18Met	p.V18M	ENST00000346208		18	Gtg/Atg																																																																															
ATM	472	MSKCC	GRCh37	11	108129740	108129740	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	41	230	0	ENST00000278616.4:c.2408del	p.Phe803SerfsTer5	p.F803Sfs*5	ENST00000278616	NM_000051.3	802	Ttt/tt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625353	69625353	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	80	368	0	ENST00000334134.2:c.440C>A	p.Pro147His	p.P147H	ENST00000334134	NM_005247.2	147	cCc/cAc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21619886	21619886	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	70	332	0	ENST00000382592.4:c.280T>G	p.Ser94Ala	p.S94A	ENST00000382592	NM_014572.2	94	Tct/Gct																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51529096	51529096	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	63	309	0	ENST00000260433.2:c.256C>T	p.Arg86Ter	p.R86*	ENST00000260433		86	Cga/Tga																																																																															
CD276	80381	MSKCC	GRCh37	15	74000705	74000705	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	198	370	0	ENST00000318443.5:c.1395G>T	p.Glu465Asp	p.E465D	ENST00000318443	NM_001024736.1	465	gaG/gaT																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349044	11349044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	137	304	0	ENST00000332029.2:c.292G>A	p.Val98Met	p.V98M	ENST00000332029	NM_003745.1	98	Gtg/Atg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2124199	2124199	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	46	349	1	ENST00000219476.3:c.2356-2A>G		p.X786_splice	ENST00000219476	NM_000548.3	786																																																																																
AXIN1	8312	MSKCC	GRCh37	16	348085	348085	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	159	409	0	ENST00000262320.3:c.1421A>G	p.His474Arg	p.H474R	ENST00000262320	NM_003502.3	474	cAc/cGc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028663	12028663	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	63	272	0	ENST00000353533.5:c.866A>C	p.Asp289Ala	p.D289A	ENST00000353533	NM_003010.3	289	gAt/gCt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16062130	16062130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	155	302	0	ENST00000268712.3:c.676C>T	p.Pro226Ser	p.P226S	ENST00000268712	NM_006311.3	226	Cct/Tct																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33689943	33689943	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	165	364	0	ENST00000308377.4:c.884T>C	p.Phe295Ser	p.F295S	ENST00000308377	NM_152270.3	295	tTc/tCc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687276	37687276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	179	380	0	ENST00000447079.4:c.4180T>C	p.Ser1394Pro	p.S1394P	ENST00000447079	NM_015083.1	1394	Tca/Cca																																																																															
CD79B	974	MSKCC	GRCh37	17	62007586	62007586	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	189	395	0	ENST00000392795.3:c.281del	p.Lys94ArgfsTer59	p.K94Rfs*59	ENST00000392795	NM_001039933.1	94	aAg/ag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18956892	18956892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	59	276	0	ENST00000262803.5:c.335C>T	p.Thr112Ile	p.T112I	ENST00000262803	NM_002911.3	112	aCc/aTc																																																																															
AXL	558	MSKCC	GRCh37	19	41758853	41758853	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768766039		P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	169	313	0	ENST00000301178.4:c.1907G>A	p.Arg636Gln	p.R636Q	ENST00000301178	NM_021913.4	636	cGg/cAg																																																																															
CIC	23152	MSKCC	GRCh37	19	42799287	42799287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	85	240	0	ENST00000575354.2:c.4771G>A	p.Ala1591Thr	p.A1591T	ENST00000575354	NM_015125.3	1591	Gct/Act																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096620	178096620	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	57	314	1	ENST00000397062.3:c.711del	p.Glu238LysfsTer2	p.E238Kfs*2	ENST00000397062	NM_006164.4	237	aaA/aa																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795058	242795058	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	57	390	0	ENST00000334409.5:c.151A>G	p.Thr51Ala	p.T51A	ENST00000334409	NM_005018.2	51	Acc/Gcc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46275845	46275845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	155	329	0	ENST00000371998.3:c.3281C>A	p.Ala1094Asp	p.A1094D	ENST00000371998		1094	gCt/gAt																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42839813	42839813	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	194	271	0	ENST00000398585.3:c.1426G>A	p.Gly476Ser	p.G476S	ENST00000398585	NM_001135099.1	476	Ggt/Agt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801083	1801083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	160	354	0	ENST00000260795.2:c.212C>T	p.Pro71Leu	p.P71L	ENST00000260795		71	cCc/cTc																																																																															
KIT	3815	MSKCC	GRCh37	4	55592097	55592097	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	45	264	0	ENST00000288135.5:c.1421T>C	p.Val474Ala	p.V474A	ENST00000288135	NM_000222.2	474	gTt/gCt																																																																															
KIT	3815	MSKCC	GRCh37	4	55592160	55592160	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	145	245	0	ENST00000288135.5:c.1484A>G	p.Asn495Ser	p.N495S	ENST00000288135	NM_000222.2	495	aAc/aGc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467694	66467694	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	55	291	0	ENST00000273854.3:c.575T>C	p.Val192Ala	p.V192A	ENST00000273854	NM_004439.5	192	gTt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112178051	112178051	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	64	377	0	ENST00000257430.4:c.6760A>T	p.Lys2254Ter	p.K2254*	ENST00000257430	NM_000038.5	2254	Aag/Tag																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522702	176522702	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	166	403	0	ENST00000292408.4:c.1799T>C	p.Met600Thr	p.M600T	ENST00000292408	NM_213647.1	600	aTg/aCg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912378	29912378	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	111	300	0	ENST00000376809.5:c.997A>G	p.Arg333Gly	p.R333G	ENST00000376809	NM_002116.7	333	Agg/Ggg																																																																															
PIM1	5292	MSKCC	GRCh37	6	37139183	37139183	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	167	367	0	ENST00000373509.5:c.523A>G	p.Ile175Val	p.I175V	ENST00000373509	NM_002648.3	175	Atc/Gtc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508581	106508581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	151	347	0	ENST00000359195.3:c.575A>G	p.Asp192Gly	p.D192G	ENST00000359195	NM_002649.2	192	gAc/gGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55232976	55232976	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	179	268	0	ENST00000275493.2:c.1726C>G	p.Pro576Ala	p.P576A	ENST00000275493	NM_005228.3	576	Cca/Gca																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046485	69046485	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	139	270	0	ENST00000288368.4:c.3958T>G	p.Phe1320Val	p.F1320V	ENST00000288368	NM_024870.2	1320	Ttt/Gtt																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80646058	80646058	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	14	135	0	ENST00000286548.4:c.94G>C	p.Asp32His	p.D32H	ENST00000286548	NM_002072.3	32	Gac/Cac																																																																															
AR	367	MSKCC	GRCh37	X	66765581	66765581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	153	194	0	ENST00000374690.3:c.593A>G	p.Gln198Arg	p.Q198R	ENST00000374690	NM_000044.3	198	cAg/cGg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256510	115256510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			383	88	324	0	ENST00000369535.4:c.201G>A	p.Met67Ile	p.M67I	ENST00000369535	NM_002524.4	67	atG/atA																																																																															
CDC73	79577	MSKCC	GRCh37	1	193110988	193110988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			617	48	341	0	ENST00000367435.3:c.521C>T	p.Ser174Phe	p.S174F	ENST00000367435	NM_024529.4	174	tCt/tTt																																																																															
MPL	4352	MSKCC	GRCh37	1	43812567	43812567	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			396	77	430	0	ENST00000372470.3:c.1270C>T	p.Gln424Ter	p.Q424*	ENST00000372470	NM_005373.2	424	Caa/Taa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870853	12870853	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			577	89	375	0	ENST00000228872.4:c.80C>A	p.Ser27Ter	p.S27*	ENST00000228872	NM_004064.3	27	tCg/tAg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870853	12870853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060500190		P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			593	73	375	0	ENST00000228872.4:c.80C>T	p.Ser27Leu	p.S27L	ENST00000228872	NM_004064.3	27	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			310	107	274	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433827	49433827	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs761581210		P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			599	103	459	0	ENST00000301067.7:c.7726C>G	p.Gln2576Glu	p.Q2576E	ENST00000301067	NM_003482.3	2576	Caa/Gaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436964	49436964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			452	63	336	0	ENST00000301067.7:c.5539G>A	p.Glu1847Lys	p.E1847K	ENST00000301067	NM_003482.3	1847	Gag/Aag																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988327	36988327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			320	53	357	0	ENST00000354822.5:c.326C>T	p.Ser109Leu	p.S109L	ENST00000354822	NM_001079668.2	109	tCg/tTg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749392	43749392	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	78	350	0	ENST00000382044.4:c.1414C>G	p.Leu472Val	p.L472V	ENST00000382044	NM_001141980.1	472	Ctg/Gtg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786144	3786144	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			900	108	416	0	ENST00000262367.5:c.4621G>C	p.Glu1541Gln	p.E1541Q	ENST00000262367	NM_004380.2	1541	Gaa/Caa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396257	396257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1025	86	430	0	ENST00000262320.3:c.769G>A	p.Asp257Asn	p.D257N	ENST00000262320	NM_003502.3	257	Gat/Aat																																																																															
CDH1	999	MSKCC	GRCh37	16	68855984	68855984	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121964877		P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			265	176	365	0	ENST00000261769.5:c.1792C>T	p.Arg598Ter	p.R598*	ENST00000261769	NM_004360.3	598	Cga/Tga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347299	89347299	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	105	429	0	ENST00000301030.4:c.5651C>G	p.Ser1884Ter	p.S1884*	ENST00000301030	NM_001256183.1	1884	tCa/tGa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682125	37682125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			346	78	401	0	ENST00000447079.4:c.3316G>A	p.Asp1106Asn	p.D1106N	ENST00000447079	NM_015083.1	1106	Gac/Aac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37884226	37884226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			441	71	425	0	ENST00000269571.5:c.3697C>A	p.Pro1233Thr	p.P1233T	ENST00000269571		1233	Cca/Aca																																																																															
BRCA1	672	MSKCC	GRCh37	17	41256219	41256219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			334	75	290	0	ENST00000357654.3:c.361G>A	p.Glu121Lys	p.E121K	ENST00000357654	NM_007294.3	121	Gaa/Aaa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120527	70120527	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			429	103	433	0	ENST00000245479.2:c.1529G>C	p.Ter510SerextTer49	p.*510Sext*49	ENST00000245479	NM_000346.3	510	tGa/tCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			217	82	410	0	ENST00000269305.4:c.811G>C	p.Glu271Gln	p.E271Q	ENST00000269305	NM_001126112.2	271	Gag/Cag																																																																															
CARM1	10498	MSKCC	GRCh37	19	11030327	11030327	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			442	82	420	0	ENST00000327064.4:c.1077C>G	p.Phe359Leu	p.F359L	ENST00000327064	NM_199141.1	359	ttC/ttG																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266845	18266845	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	66	377	0	ENST00000222254.8:c.156G>C	p.Gln52His	p.Q52H	ENST00000222254	NM_005027.3	52	caG/caC																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222199	6222199	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867264888		P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			531	81	491	0	ENST00000252674.7:c.1043G>A	p.Arg348Gln	p.R348Q	ENST00000252674	NM_005934.3	348	cGg/cAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40789994	40789994	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs746391800		P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			552	65	365	0	ENST00000373198.4:c.2737G>A	p.Glu913Lys	p.E913K	ENST00000373198	NM_133170.3	913	Gag/Aag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41408930	41408930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			501	63	335	0	ENST00000373198.4:c.496G>A	p.Glu166Lys	p.E166K	ENST00000373198	NM_133170.3	166	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			177	80	183	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021779	71021779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			423	71	435	0	ENST00000318789.4:c.1579G>A	p.Glu527Lys	p.E527K	ENST00000318789	NM_032682.5	527	Gaa/Aaa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021828	71021828	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			373	55	329	0	ENST00000318789.4:c.1531-1G>C		p.X511_splice	ENST00000318789	NM_032682.5	511																																																																																
FAT1	2195	MSKCC	GRCh37	4	187628235	187628235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			323	94	432	0	ENST00000441802.2:c.2747C>T	p.Ser916Leu	p.S916L	ENST00000441802	NM_005245.3	916	tCa/tTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628449	187628449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1346000368		P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			332	85	450	0	ENST00000441802.2:c.2533G>A	p.Glu845Lys	p.E845K	ENST00000441802	NM_005245.3	845	Gaa/Aaa																																																																															
KIT	3815	MSKCC	GRCh37	4	55561681	55561681	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			305	64	310	0	ENST00000288135.5:c.71C>G	p.Ser24Cys	p.S24C	ENST00000288135	NM_000222.2	24	tCt/tGt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513233	149513233	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			378	81	397	0	ENST00000261799.4:c.850G>C	p.Glu284Gln	p.E284Q	ENST00000261799	NM_002609.3	284	Gaa/Caa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176720911	176720911	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	69	429	0	ENST00000439151.2:c.6542C>G	p.Ser2181Cys	p.S2181C	ENST00000439151	NM_022455.4	2181	tCc/tGc																																																																															
MSH3	4437	MSKCC	GRCh37	5	80063812	80063812	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	74	331	0	ENST00000265081.6:c.1957C>G	p.Gln653Glu	p.Q653E	ENST00000265081	NM_002439.4	653	Caa/Gaa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679698	30679698	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771332562		P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			545	105	482	0	ENST00000376406.3:c.2021G>A	p.Arg674Lys	p.R674K	ENST00000376406	NM_014641.2	674	aGa/aAa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962271	2962271	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867239716		P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			352	72	307	0	ENST00000396946.4:c.2266G>A	p.Glu756Lys	p.E756K	ENST00000396946	NM_032415.4	756	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55260515	55260515	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			291	54	228	0	ENST00000275493.2:c.2682G>C	p.Gln894His	p.Q894H	ENST00000275493	NM_005228.3	894	caG/caC																																																																															
JAK2	3717	MSKCC	GRCh37	9	5044416	5044416	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			334	44	231	0	ENST00000381652.3:c.364C>G	p.Arg122Gly	p.R122G	ENST00000381652	NM_004972.3	122	Cgt/Ggt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53253957	53253957	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			430	60	392	0	ENST00000375401.3:c.115G>C	p.Glu39Gln	p.E39Q	ENST00000375401	NM_004187.3	39	Gag/Cag																																																																															
AR	367	MSKCC	GRCh37	X	66765742	66765742	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			600	99	503	0	ENST00000374690.3:c.754G>T	p.Glu252Ter	p.E252*	ENST00000374690	NM_000044.3	252	Gag/Tag																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115266527	115266527	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			308	65	285	0	ENST00000438362.2:c.1988G>C	p.Gly663Ala	p.G663A	ENST00000438362	NM_001242891.1	663	gGa/gCa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120510111	120510111	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			452	95	392	0	ENST00000256646.2:c.1398G>C	p.Gln466His	p.Q466H	ENST00000256646	NM_024408.3	466	caG/caC																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150900344	150900344	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			898	65	420	0	ENST00000271640.5:c.154G>C	p.Asp52His	p.D52H	ENST00000271640	NM_001145415.1	52	Gat/Cat																																																																															
DDR2	4921	MSKCC	GRCh37	1	162741975	162741975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			657	149	391	0	ENST00000367921.3:c.1666G>A	p.Glu556Lys	p.E556K	ENST00000367921	NM_006182.2	556	Gag/Aag																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518400	204518400	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			894	177	457	0	ENST00000367182.3:c.1063G>C	p.Glu355Gln	p.E355Q	ENST00000367182	NM_001278516.1	355	Gaa/Caa																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518452	204518452	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			781	163	441	0	ENST00000367182.3:c.1115G>C	p.Arg372Thr	p.R372T	ENST00000367182	NM_001278516.1	372	aGa/aCa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851958	63851958	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			399	120	425	0	ENST00000279873.7:c.2736G>C	p.Lys912Asn	p.K912N	ENST00000279873	NM_032199.2	912	aaG/aaC																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374267	118374267	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	95	464	0	ENST00000534358.1:c.7660G>C	p.Glu2554Gln	p.E2554Q	ENST00000534358	NM_005933.3	2554	Gag/Cag																																																																															
WT1	7490	MSKCC	GRCh37	11	32410712	32410712	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			431	73	353	0	ENST00000332351.3:c.1446C>A	p.Phe482Leu	p.F482L	ENST00000332351	NM_024426.4	482	ttC/ttA																																																																															
KDM5A	5927	MSKCC	GRCh37	12	432929	432929	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			558	102	368	0	ENST00000399788.2:c.1987G>C	p.Glu663Gln	p.E663Q	ENST00000399788	NM_001042603.1	663	Gaa/Caa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	442772	442772	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			544	67	377	1	ENST00000399788.2:c.1534G>C	p.Glu512Gln	p.E512Q	ENST00000399788	NM_001042603.1	512	Gag/Cag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	498164	498164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			487	140	341	0	ENST00000399788.2:c.94C>T	p.Pro32Ser	p.P32S	ENST00000399788	NM_001042603.1	32	Ccg/Tcg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134177	41134177	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	83	454	0	ENST00000379561.5:c.1451T>G	p.Val484Gly	p.V484G	ENST00000379561	NM_002015.3	484	gTa/gGa																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240171	41240171	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			218	58	238	0	ENST00000379561.5:c.179C>G	p.Ser60Trp	p.S60W	ENST00000379561	NM_002015.3	60	tCg/tGg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988563	36988563	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			458	78	431	0	ENST00000354822.5:c.90C>G	p.Ile30Met	p.I30M	ENST00000354822	NM_001079668.2	30	atC/atG																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748653	43748653	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			488	91	463	0	ENST00000382044.4:c.2153C>G	p.Ser718Ter	p.S718*	ENST00000382044	NM_001141980.1	718	tCa/tGa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749080	43749080	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			471	98	441	0	ENST00000382044.4:c.1726C>G	p.Pro576Ala	p.P576A	ENST00000382044	NM_001141980.1	576	Cca/Gca																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14026115	14026115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			959	60	313	0	ENST00000311895.7:c.1075G>A	p.Glu359Lys	p.E359K	ENST00000311895	NM_005236.2	359	Gaa/Aaa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029423	14029423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1149	95	448	0	ENST00000311895.7:c.1634G>A	p.Gly545Glu	p.G545E	ENST00000311895	NM_005236.2	545	gGa/gAa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3830805	3830805	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			904	195	461	0	ENST00000262367.5:c.1751C>G	p.Ser584Cys	p.S584C	ENST00000262367	NM_004380.2	584	tCt/tGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68867311	68867311	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			304	88	351	0	ENST00000261769.5:c.2558C>G	p.Ser853Ter	p.S853*	ENST00000261769	NM_004360.3	853	tCa/tGa																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428366	33428366	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137886232		P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	81	350	0	ENST00000335858.7:c.421C>T	p.Arg141Ter	p.R141*	ENST00000335858	NM_133629.2	141	Cga/Tga																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61305069	61305069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			352	78	497	0	ENST00000341074.5:c.1057G>C	p.Glu353Gln	p.E353Q	ENST00000341074	NM_002974.2	353	Gaa/Caa																																																																															
YES1	7525	MSKCC	GRCh37	18	736883	736883	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			490	2306	322	0	ENST00000314574.4:c.1216G>C	p.Glu406Gln	p.E406Q	ENST00000314574	NM_005433.3	406	Gaa/Caa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597412	10597412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			467	75	372	0	ENST00000171111.5:c.1791G>A	p.Met597Ile	p.M597I	ENST00000171111	NM_203500.1	597	atG/atA																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4117548	4117548	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	37	156	0	ENST00000262948.5:c.172C>A	p.Leu58Ile	p.L58I	ENST00000262948	NM_030662.3	58	Ctc/Atc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225368430	225368430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			441	78	279	0	ENST00000264414.4:c.1316G>C	p.Arg439Thr	p.R439T	ENST00000264414	NM_003590.4	439	aGa/aCa																																																																															
ALK	238	MSKCC	GRCh37	2	30142968	30142968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	284	474	0	ENST00000389048.3:c.558G>T	p.Arg186Ser	p.R186S	ENST00000389048	NM_004304.4	186	agG/agT																																																																															
TOP1	7150	MSKCC	GRCh37	20	39704842	39704842	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			648	97	368	0	ENST00000361337.2:c.187G>C	p.Glu63Gln	p.E63Q	ENST00000361337	NM_003286.2	63	Gag/Cag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484220	57484220	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			531	64	297	0	ENST00000371085.3:c.534C>G	p.Phe178Leu	p.F178L	ENST00000371085	NM_000516.4	178	ttC/ttG																																																																															
ERG	2078	MSKCC	GRCh37	21	39817505	39817505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			415	85	340	0	ENST00000288319.7:c.58G>A	p.Glu20Lys	p.E20K	ENST00000288319	NM_182918.3	20	Gag/Aag																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21351190	21351190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			439	82	441	0	ENST00000215739.8:c.2341G>A	p.Asp781Asn	p.D781N	ENST00000215739	NM_006767.3	781	Gac/Aac																																																																															
EP300	2033	MSKCC	GRCh37	22	41564603	41564603	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			320	83	399	0	ENST00000263253.7:c.4025G>A	p.Arg1342Lys	p.R1342K	ENST00000263253	NM_001429.3	1342	aGg/aAg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119585460	119585460	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			264	66	203	0	ENST00000316626.5:c.925G>C	p.Gly309Arg	p.G309R	ENST00000316626		309	Gga/Cga																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933798	49933798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			431	86	479	0	ENST00000296474.3:c.2479C>T	p.Pro827Ser	p.P827S	ENST00000296474	NM_002447.2	827	Cct/Tct																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637615	52637615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			496	95	390	0	ENST00000394830.3:c.2701G>A	p.Asp901Asn	p.D901N	ENST00000394830	NM_018313.4	901	Gat/Aat																																																																															
REST	5978	MSKCC	GRCh37	4	57777588	57777588	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			469	88	379	0	ENST00000309042.7:c.784C>A	p.His262Asn	p.H262N	ENST00000309042	NM_005612.4	262	Cac/Aac																																																																															
ALB	213	MSKCC	GRCh37	4	74285271	74285271	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			409	88	339	0	ENST00000295897.4:c.1700A>T	p.Gln567Leu	p.Q567L	ENST00000295897	NM_000477.5	567	cAa/cTa																																																																															
NPM1	4869	MSKCC	GRCh37	5	170819939	170819939	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			487	55	347	0	ENST00000296930.5:c.481G>C	p.Asp161His	p.D161H	ENST00000296930	NM_002520.6	161	Gat/Cat																																																																															
NSD1	64324	MSKCC	GRCh37	5	176673775	176673775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	70	318	0	ENST00000439151.2:c.4475C>T	p.Ser1492Leu	p.S1492L	ENST00000439151	NM_022455.4	1492	tCa/tTa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38942955	38942955	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			411	77	302	0	ENST00000357387.3:c.5032C>G	p.Gln1678Glu	p.Q1678E	ENST00000357387	NM_152756.3	1678	Caa/Gaa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755521	57755521	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			374	67	369	0	ENST00000274289.3:c.266G>C	p.Gly89Ala	p.G89A	ENST00000274289	NM_006622.3	89	gGa/gCa																																																																															
TRIP13	9319	MSKCC	GRCh37	5	912112	912112	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			455	58	329	0	ENST00000166345.3:c.1020+1G>A		p.X340_splice	ENST00000166345	NM_004237.3	340																																																																																
ROS1	6098	MSKCC	GRCh37	6	117708157	117708157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			364	68	273	0	ENST00000368508.3:c.2020G>A	p.Glu674Lys	p.E674K	ENST00000368508	NM_002944.2	674	Gaa/Aaa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528745	157528745	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			512	86	431	0	ENST00000346085.5:c.6470G>C	p.Gly2157Ala	p.G2157A	ENST00000346085	NM_020732.3	2157	gGa/gCa																																																																															
E2F3	1871	MSKCC	GRCh37	6	20486942	20486942	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	43	279	0	ENST00000346618.3:c.907G>C	p.Asp303His	p.D303H	ENST00000346618	NM_001949.4	303	Gat/Cat																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816891	32816891	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			421	74	296	0	ENST00000354258.4:c.1433C>A	p.Ser478Ter	p.S478*	ENST00000354258	NM_000593.5	478	tCa/tAa																																																																															
POT1	25913	MSKCC	GRCh37	7	124503670	124503670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			383	59	255	0	ENST00000357628.3:c.280C>T	p.Gln94Ter	p.Q94*	ENST00000357628	NM_015450.2	94	Cag/Tag																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444248	50444248	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	59	370	0	ENST00000331340.3:c.178G>C	p.Glu60Gln	p.E60Q	ENST00000331340	NM_006060.4	60	Gag/Cag																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2039740	2039740	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			578	105	489	0	ENST00000349721.2:c.630G>C	p.Arg210Ser	p.R210S	ENST00000349721	NM_003070.3	210	agG/agC																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2181664	2181664	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			357	56	277	0	ENST00000349721.2:c.4347C>G	p.Phe1449Leu	p.F1449L	ENST00000349721	NM_003070.3	1449	ttC/ttG																																																																															
TEK	7010	MSKCC	GRCh37	9	27197433	27197433	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			375	66	367	0	ENST00000380036.4:c.1745C>G	p.Ser582Cys	p.S582C	ENST00000380036	NM_000459.3	582	tCt/tGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507365	8507365	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			428	45	348	0	ENST00000356435.5:c.1613C>G	p.Pro538Arg	p.P538R	ENST00000356435		538	cCt/cGt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44919330	44919330	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			200	28	152	0	ENST00000377967.4:c.1258G>C	p.Glu420Gln	p.E420Q	ENST00000377967	NM_021140.2	420	Gag/Cag																																																																															
ATRX	546	MSKCC	GRCh37	X	76814280	76814280	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			367	64	287	0	ENST00000373344.5:c.6364C>G	p.Leu2122Val	p.L2122V	ENST00000373344	NM_000489.3	2122	Cta/Gta																																																																															
ATRX	546	MSKCC	GRCh37	X	76829802	76829802	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053631-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			279	47	275	1	ENST00000373344.5:c.6239A>G	p.Asn2080Ser	p.N2080S	ENST00000373344	NM_000489.3	2080	aAc/aGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062918-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			881	120	433	2	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0062918-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			805	149	442	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0062918-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			841	395	434	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022238	31022238	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs747847938		P-0062918-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			746	45	316	0	ENST00000375687.4:c.1723C>T	p.Gln575Ter	p.Q575*	ENST00000375687	NM_015338.5	575	Caa/Taa																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46611675	46611675	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1327397090		P-0062918-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			942	19	0	0	ENST00000263734.3:c.2489C>T	p.Ser830Leu	p.S830L	ENST00000263734	NM_001430.4	830	tCa/tTa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868066	56868066	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0062918-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1028	60	407	0	ENST00000308159.5:c.1564T>G	p.Cys522Gly	p.C522G	ENST00000308159	NM_014669.4	522	Tgc/Ggc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101867515	101867515	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062918-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			530	52	287	0	ENST00000374994.4:c.28C>A	p.Pro10Thr	p.P10T	ENST00000374994	NM_004612.2	10	Ccc/Acc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912291	29912291	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062918-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	27	210	0	ENST00000376809.5:c.910C>G	p.Pro304Ala	p.P304A	ENST00000376809	NM_002116.7	304	Ccc/Gcc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43700244	43700244	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064951-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			468	189	476	0	ENST00000382044.4:c.5643G>C	p.Leu1881Phe	p.L1881F	ENST00000382044	NM_001141980.1	1881	ttG/ttC																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62319508	62319508	+	frameshift_variant,NMD_transcript_variant	Frame_Shift_Del	DEL	T	T	-			P-0064951-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			1857	213	507	0	ENST00000482936.1:c.1613del	p.Leu538TyrfsTer20	p.L538Yfs*20	ENST00000482936		538	Tta/ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0071529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	397	426	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0071529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	51	301	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175225	112175225	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0071529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	68	408	0	ENST00000257430.4:c.3934G>T	p.Gly1312Ter	p.G1312*	ENST00000257430	NM_000038.5	1312	Gga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115975	8115975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	29	452	0	ENST00000346208.3:c.1321G>A	p.Ala441Thr	p.A441T	ENST00000346208		441	Gcc/Acc																																																																															
ALK	238	MSKCC	GRCh37	2	30143479	30143479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs542229113		P-0071529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			74	59	348	0	ENST00000389048.3:c.47C>T	p.Thr16Met	p.T16M	ENST00000389048	NM_004304.4	16	aCg/aTg																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858237	27858238	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-	rs763163035		P-0071529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			858	148	570	0	ENST00000359303.2:c.333_334del	p.Ala112TyrfsTer11	p.A112Yfs*11	ENST00000359303	NM_003535.2	111	tgTGct/tgct																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422935	47422935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	65	478	0	ENST00000404338.3:c.1003C>T	p.Arg335Cys	p.R335C	ENST00000404338	NM_004491.4	335	Cgt/Tgt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0071548-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			434	98	453	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
ATM	472	MSKCC	GRCh37	11	108205807	108205807	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782719		P-0071548-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			169	194	485	0	ENST00000278616.4:c.8122G>A	p.Asp2708Asn	p.D2708N	ENST00000278616	NM_000051.3	2708	Gat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0071548-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			321	492	398	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201831	66201831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071548-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			232	213	596	0	ENST00000273854.3:c.2671G>T	p.Val891Leu	p.V891L	ENST00000273854	NM_004439.5	891	Gta/Tta																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81922808	81922808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071548-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			398	118	517	0	ENST00000359376.3:c.797G>A	p.Arg266His	p.R266H	ENST00000359376	NM_002661.3	266	cGt/cAt																																																																															
TET1	80312	MSKCC	GRCh37	10	70405017	70405030	+	frameshift_variant	Frame_Shift_Del	DEL	ATCATCATGCTAGT	ATCATCATGCTAGT	-			P-0071548-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			456	111	592	0	ENST00000373644.4:c.2533_2546del	p.His845ThrfsTer3	p.H845Tfs*3	ENST00000373644	NM_030625.2	844	aATCATCATGCTAGT/a																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612741	228612741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071548-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			1126	169	802	0	ENST00000366696.1:c.286G>A	p.Ala96Thr	p.A96T	ENST00000366696	NM_003493.2	96	Gcg/Acg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777838	3777838	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0071548-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			442	341	618	0	ENST00000262367.5:c.7210G>T	p.Glu2404Ter	p.E2404*	ENST00000262367	NM_004380.2	2404	Gaa/Taa																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871603	35871603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071548-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			531	181	463	0	ENST00000216797.5:c.903C>A	p.Asp301Glu	p.D301E	ENST00000216797	NM_020529.2	301	gaC/gaA																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118380674	118380674	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071548-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			158	200	433	0	ENST00000534358.1:c.10912G>C	p.Val3638Leu	p.V3638L	ENST00000534358	NM_005933.3	3638	Gtg/Ctg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573728	64573728	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377715802		P-0075136-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			624	85	433	0	ENST00000337652.1:c.1040C>T	p.Ala347Val	p.A347V	ENST00000337652	NM_130803.2	347	gCg/gTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65307191	65307191	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075136-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			622	80	387	0	ENST00000342505.4:c.2497A>T	p.Asn833Tyr	p.N833Y	ENST00000342505	NM_002227.2	833	Aat/Tat																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032266	26032267	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0075136-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			595	68	438	0	ENST00000244661.2:c.22_23delinsAA	p.Ala8Asn	p.A8N	ENST00000244661	NM_003537.3	8	GCt/AAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0080526-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			267	253	566	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602286	10602286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080526-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			288	249	513	0	ENST00000171111.5:c.1292C>T	p.Ser431Phe	p.S431F	ENST00000171111	NM_203500.1	431	tCc/tTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220410	1220410	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080526-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			278	256	505	0	ENST00000326873.7:c.503A>G	p.His168Arg	p.H168R	ENST00000326873	NM_000455.4	168	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0080526-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			419	208	305	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11151995	11151998	+	frameshift_variant	Frame_Shift_Del	DEL	GGCA	GGCA	-			P-0080526-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			314	230	407	0	ENST00000344626.4:c.4183_4186del	p.Gly1395ArgfsTer67	p.G1395Rfs*67	ENST00000344626	NM_003072.3	1395	GGCAcg/cg																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs869025608		P-0082915-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			152	32	311	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619280	37619280	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0082915-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			210	35	402	0	ENST00000447079.4:c.956A>T	p.Tyr319Phe	p.Y319F	ENST00000447079	NM_015083.1	319	tAc/tTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600505	10600505	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082915-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			202	46	448	0	ENST00000171111.5:c.1350G>T	p.Trp450Cys	p.W450C	ENST00000171111	NM_203500.1	450	tgG/tgT																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635191	87635191	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367769334		P-0082915-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			138	15	296	0	ENST00000277120.3:c.2243C>T	p.Thr748Met	p.T748M	ENST00000277120		748	aCg/aTg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162725472	162725472	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082915-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			154	43	306	0	ENST00000367921.3:c.584A>G	p.Asn195Ser	p.N195S	ENST00000367921	NM_006182.2	195	aAt/aGt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859031	57859031	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082915-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			158	29	294	0	ENST00000228682.2:c.527C>G	p.Thr176Ser	p.T176S	ENST00000228682	NM_005269.2	176	aCt/aGt																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627806	14627806	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082915-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			299	19	536	0	ENST00000254322.2:c.264del	p.Ser89LeufsTer56	p.S89Lfs*56	ENST00000254322	NM_006145.1	88	acC/ac																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317476	1317476	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0082915-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			93	28	285	0				ENST00000381566																																																																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0084786-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			79	264	440	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
RB1	5925	MSKCC	GRCh37	13	48936949	48936949	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0084786-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			35	97	314	0	ENST00000267163.4:c.719-2A>G		p.X240_splice	ENST00000267163	NM_000321.2	240																																																																																
STAT5A	6776	MSKCC	GRCh37	17	40441469	40441469	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084786-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			67	176	379	0	ENST00000345506.4:c.40G>T	p.Ala14Ser	p.A14S	ENST00000345506	NM_003152.3	14	Gcg/Tcg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78432588	78432588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084786-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			162	289	420	1	ENST00000370768.2:c.395G>A	p.Cys132Tyr	p.C132Y	ENST00000370768	NM_003902.3	132	tGc/tAc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458115	120458121	+	frameshift_variant	Frame_Shift_Del	DEL	ACCCTGG	ACCCTGG	-			P-0084786-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			74	341	557	0	ENST00000256646.2:c.7224_7230del	p.Gln2409SerfsTer5	p.Q2409Sfs*5	ENST00000256646	NM_024408.3	2408	ctCCAGGGT/ct																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080251	5080254	+	frameshift_variant	Frame_Shift_Del	DEL	GGTA	GGTA	-			P-0084786-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			10	48	373	0	ENST00000381652.3:c.2154_2157del	p.Trp718CysfsTer12	p.W718Cfs*12	ENST00000381652	NM_004972.3	718	tgGGTA/tg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347279	89347279	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0084786-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			153	70	553	0	ENST00000301030.4:c.5671del	p.Ser1891ProfsTer72	p.S1891Pfs*72	ENST00000301030	NM_001256183.1	1891	Tcc/cc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220488	1220488	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0084904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			766	74	485	0	ENST00000326873.7:c.581A>C	p.Asp194Ala	p.D194A	ENST00000326873	NM_000455.4	194	gAc/gCc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220433	1220433	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881979		P-0084904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			780	71	533	0	ENST00000326873.7:c.526G>A	p.Asp176Asn	p.D176N	ENST00000326873	NM_000455.4	176	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0084904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	37	303	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120752	115120758	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTGGG	GCCTGGG	-			P-0085304-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			543	68	402	0	ENST00000257566.3:c.248_254del	p.Pro83ArgfsTer3	p.P83Rfs*3	ENST00000257566	NM_016569.3	83	cCCCAGGCg/cg																																																																															
CDH1	999	MSKCC	GRCh37	16	68845764	68845764	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0085304-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			419	66	342	0	ENST00000261769.5:c.1008+2T>A		p.X336_splice	ENST00000261769	NM_004360.3	336																																																																																
CBFB	865	MSKCC	GRCh37	16	67100682	67100682	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0085304-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			485	61	367	0	ENST00000412916.2:c.380T>G	p.Phe127Cys	p.F127C	ENST00000412916		127	tTt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0085309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	84	469	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038912	12038912	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	90	399	0	ENST00000396373.4:c.1205A>G	p.Tyr402Cys	p.Y402C	ENST00000396373	NM_001987.4	402	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0085309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	29	275	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575071	48575071	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	49	282	0	ENST00000342988.3:c.265G>A	p.Gly89Arg	p.G89R	ENST00000342988	NM_005359.5	89	Gga/Aga																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96920627	96920627	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769359648		P-0085309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	94	435	0	ENST00000258439.3:c.353C>T	p.Pro118Leu	p.P118L	ENST00000258439	NM_001193304.2	118	cCg/cTg																																																																															
ATM	472	MSKCC	GRCh37	11	108202712	108202712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	31	358	0	ENST00000278616.4:c.7736G>A	p.Arg2579Lys	p.R2579K	ENST00000278616	NM_000051.3	2579	aGa/aAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575176	48575176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	26	266	0	ENST00000342988.3:c.370G>A	p.Asp124Asn	p.D124N	ENST00000342988	NM_005359.5	124	Gat/Aat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575687	48575687	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	20	318	0	ENST00000342988.3:c.447G>C	p.Gln149His	p.Q149H	ENST00000342988	NM_005359.5	149	caG/caC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573570	48573573	+	frameshift_variant	Frame_Shift_Del	DEL	GATG	GATG	AAA			P-0085309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	18	390	0	ENST00000342988.3:c.154_157delinsAAA	p.Asp52LysfsTer6	p.D52Kfs*6	ENST00000342988	NM_005359.5	52	GATGaa/AAAaa																																																																															
MED12	9968	MSKCC	GRCh37	X	70349913	70349913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085319-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			367	77	353	0	ENST00000374080.3:c.3896C>T	p.Ser1299Phe	p.S1299F	ENST00000374080		1299	tCt/tTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220463	1220464	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0085319-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			369	68	343	0	ENST00000326873.7:c.558dup	p.Gly187ArgfsTer79	p.G187Rfs*79	ENST00000326873	NM_000455.4	186	acc/aCcc																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0085488-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	142	262	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779649	3779649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085488-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	206	509	0	ENST00000262367.5:c.5399G>A	p.Arg1800Gln	p.R1800Q	ENST00000262367	NM_004380.2	1800	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0085488-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	262	227	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932350	36932350	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085488-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	281	442	0	ENST00000361632.4:c.2119G>C	p.Val707Leu	p.V707L	ENST00000361632		707	Gtg/Ctg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	-	rs121913425		P-0085491-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	42	323	0	ENST00000275493.2:c.2237_2251del	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gca																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719793	190719793	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085491-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	18	273	0	ENST00000441310.2:c.1795G>C	p.Glu599Gln	p.E599Q	ENST00000441310	NM_000534.4	599	Gag/Cag																																																																															
APC	324	MSKCC	GRCh37	5	112151228	112151234	+	frameshift_variant	Frame_Shift_Del	DEL	GTTTTGA	GTTTTGA	-			P-0085491-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	39	256	0	ENST00000257430.4:c.874_880del	p.Ser293ValfsTer10	p.S293Vfs*10	ENST00000257430	NM_000038.5	291	GTTTTGAgt/gt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572567	64572567	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	182	507	0	ENST00000337652.1:c.1304del	p.Pro435LeufsTer15	p.P435Lfs*15	ENST00000337652	NM_130803.2	435	cCt/ct																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900360	101900360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	39	266	0	ENST00000374994.4:c.794C>T	p.Ala265Val	p.A265V	ENST00000374994	NM_004612.2	265	gCa/gTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0085637-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			146	307	336	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0085637-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			357	239	430	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934976	49934976	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1277564624		P-0085637-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			575	144	488	0	ENST00000296474.3:c.2023G>A	p.Val675Met	p.V675M	ENST00000296474	NM_002447.2	675	Gtg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0085648-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			492	55	291	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577512	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0085648-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			405	6	0	0	ENST00000269305.4:c.769_770del	p.Leu257GlyfsTer6	p.L257Gfs*6	ENST00000269305	NM_001126112.2	257	CTg/g																																																																															
ATM	472	MSKCC	GRCh37	11	108150234	108150234	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0085653-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			87	36	278	0	ENST00000278616.4:c.3301A>T	p.Lys1101Ter	p.K1101*	ENST00000278616	NM_000051.3	1101	Aag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602799	10602799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085653-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			271	15	462	0	ENST00000171111.5:c.779G>A	p.Arg260Gln	p.R260Q	ENST00000171111	NM_203500.1	260	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085653-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			219	44	265	0	ENST00000263967.3:c.1031T>A	p.Val344Glu	p.V344E	ENST00000263967	NM_006218.2	344	gTg/gAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0085653-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			195	172	319	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0085653-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			189	231	316	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883704	37883704	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085653-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			251	116	428	0	ENST00000269571.5:c.3316C>A	p.Pro1106Thr	p.P1106T	ENST00000269571		1106	Ccc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579575	7579575	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			72	334	392	0	ENST00000269305.4:c.112del	p.Gln38LysfsTer6	p.Q38Kfs*6	ENST00000269305	NM_001126112.2	38	Caa/aa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0085661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	93	339	1	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0085661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	133	385	1	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503760	47503760	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs986522562		P-0085661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	176	393	0	ENST00000404338.3:c.4315C>T	p.Arg1439Trp	p.R1439W	ENST00000404338	NM_004491.4	1439	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112174695	112174696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGAAGATG			P-0085661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	237	466	0	ENST00000257430.4:c.3405_3412dup	p.Asp1138ValfsTer30	p.D1138Vfs*30	ENST00000257430	NM_000038.5	1135	tat/taTGAAGATGt																																																																															
NUF2	83540	MSKCC	GRCh37	1	163313531	163313531	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0085661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	81	247	0	ENST00000271452.3:c.681del	p.Lys227AsnfsTer7	p.K227Nfs*7	ENST00000271452	NM_145697.2	226	ctA/ct																																																																															
MDM2	4193	MSKCC	GRCh37	12	69214154	69214154	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0085661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	55	248	0	ENST00000462284.1:c.358G>T	p.Glu120Ter	p.E120*	ENST00000462284	NM_002392.5	120	Gaa/Taa																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699327	117699327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	179	369	0	ENST00000369458.3:c.314C>A	p.Ala105Asp	p.A105D	ENST00000369458	NM_024626.3	105	gCt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0085675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	191	232	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748092	41748092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	62	128	0	ENST00000226382.2:c.677C>T	p.Ala226Val	p.A226V	ENST00000226382	NM_003924.3	226	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112173661	112173662	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0085675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	88	376	0	ENST00000257430.4:c.2373_2374del	p.His791GlnfsTer7	p.H791Qfs*7	ENST00000257430	NM_000038.5	790	agACac/agac																																																																															
APC	324	MSKCC	GRCh37	5	112175758	112175759	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0085675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	129	384	0	ENST00000257430.4:c.4468_4469del	p.His1490PhefsTer23	p.H1490Ffs*23	ENST00000257430	NM_000038.5	1489	ttACat/ttat																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468083	50468083	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775617502		P-0085675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	102	405	0	ENST00000331340.3:c.1318G>A	p.Ala440Thr	p.A440T	ENST00000331340	NM_006060.4	440	Gcc/Acc																																																																															
NF1	4763	MSKCC	GRCh37	17	29556175	29556175	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	27	133	0	ENST00000358273.4:c.2546del	p.Gly849GlufsTer29	p.G849Efs*29	ENST00000358273	NM_001042492.2	848	Ggg/gg																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402513	20402513	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	84	277	0	ENST00000346618.3:c.50G>T	p.Gly17Val	p.G17V	ENST00000346618	NM_001949.4	17	gGg/gTg																																																																															
AR	367	MSKCC	GRCh37	X	66941699	66941699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137852589		P-0085675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	87	319	0	ENST00000374690.3:c.2343G>A	p.Met781Ile	p.M781I	ENST00000374690	NM_000044.3	781	atG/atA																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551730	150551730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	21	311	0	ENST00000369026.2:c.277C>T	p.Pro93Ser	p.P93S	ENST00000369026	NM_021960.4	93	Ccc/Tcc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144113	11144113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	15	338	0	ENST00000358026.2:c.3694G>A	p.Gly1232Ser	p.G1232S	ENST00000358026	NM_001128849.1	1232	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0085677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	63	217	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
ATM	472	MSKCC	GRCh37	11	108225557	108225557	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	72	268	0	ENST00000278616.4:c.8806G>T	p.Glu2936Ter	p.E2936*	ENST00000278616	NM_000051.3	2936	Gaa/Taa																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133715	41133715	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	24	377	0	ENST00000379561.5:c.1913A>G	p.Asn638Ser	p.N638S	ENST00000379561	NM_002015.3	638	aAc/aGc																																																																															
ATM	472	MSKCC	GRCh37	11	108175529	108175529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762304746		P-0085677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	63	306	0	ENST00000278616.4:c.5624G>A	p.Arg1875Gln	p.R1875Q	ENST00000278616	NM_000051.3	1875	cGa/cAa																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260250	149260250	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	23	336	0	ENST00000360632.3:c.643C>A	p.Pro215Thr	p.P215T	ENST00000360632	NM_015472.4	215	Ccc/Acc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193107258	193107258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	121	272	2	ENST00000367435.3:c.467G>A	p.Arg156His	p.R156H	ENST00000367435	NM_024529.4	156	cGt/cAt																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246078852	246078852	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150058397		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	90	255	0	ENST00000388985.4:c.793C>T	p.Arg265Cys	p.R265C	ENST00000388985		265	Cgt/Tgt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1181132297		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	151	326	0	ENST00000342505.4:c.1016del	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925318	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	98	306	0	ENST00000543371.1:c.1402_1403del	p.Lys468ValfsTer8	p.K468Vfs*8	ENST00000543371	NM_001198531.1	465	agAAaa/agaa																																																																															
RET	5979	MSKCC	GRCh37	10	43597981	43597981	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765654609		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	29	442	0	ENST00000355710.3:c.529C>T	p.Arg177Trp	p.R177W	ENST00000355710	NM_020975.4	177	Cgg/Tgg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	37	132	1	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109887	115109887	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762342872		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	85	385	0	ENST00000257566.3:c.1991C>T	p.Ala664Val	p.A664V	ENST00000257566	NM_016569.3	664	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	18	234	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
ARID2	196528	MSKCC	GRCh37	12	46211626	46211626	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	98	214	0	ENST00000334344.6:c.595del	p.Ile199SerfsTer16	p.I199Sfs*16	ENST00000334344	NM_152641.2	198	Aaa/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49442997	49442997	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760202783		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	122	303	0	ENST00000301067.7:c.3911G>A	p.Arg1304His	p.R1304H	ENST00000301067	NM_003482.3	1304	cGc/cAc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864588	57864588	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	117	370	0	ENST00000228682.2:c.2070del	p.Ser691AlafsTer28	p.S691Afs*28	ENST00000228682	NM_005269.2	689	Ccc/cc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563349	21563349	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	143	444	0	ENST00000382592.4:c.570del	p.Tyr191ThrfsTer49	p.Y191Tfs*49	ENST00000382592	NM_014572.2	190	ccC/cc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28624345	28624348	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	318	281	0	ENST00000241453.7:c.626_629del	p.Glu209ValfsTer20	p.E209Vfs*20	ENST00000241453	NM_004119.2	209	gAAAGt/gt																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643296	38643296	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1331443136		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	95	305	0	ENST00000299084.4:c.766C>T	p.Arg256Cys	p.R256C	ENST00000299084	NM_152594.2	256	Cgt/Tgt																																																																															
MGA	23269	MSKCC	GRCh37	15	42042077	42042077	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	145	412	0	ENST00000219905.7:c.6276del	p.Ala2093ProfsTer9	p.A2093Pfs*9	ENST00000219905	NM_001164273.1	2091	gAa/ga																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640560	3640560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	143	410	0	ENST00000294008.3:c.3079G>A	p.Ala1027Thr	p.A1027T	ENST00000294008	NM_032444.2	1027	Gca/Aca																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819310	3819310	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	168	359	0	ENST00000262367.5:c.2925del	p.Ser976ProfsTer22	p.S976Pfs*22	ENST00000262367	NM_004380.2	975	ccC/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984685	72984685	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776123634		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	123	366	0	ENST00000268489.5:c.2899G>A	p.Val967Met	p.V967M	ENST00000268489	NM_006885.3	967	Gtg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993623	72993623	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750671779		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	134	402	0	ENST00000268489.5:c.422C>T	p.Ala141Val	p.A141V	ENST00000268489	NM_006885.3	141	gCg/gTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	34	310	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	127	372	1	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	157	355	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579383	7579383	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	130	321	0	ENST00000269305.4:c.304del	p.Thr102ProfsTer21	p.T102Pfs*21	ENST00000269305	NM_001126112.2	102	Acc/cc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281154	15281154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	131	363	0	ENST00000263388.2:c.5102C>T	p.Ala1701Val	p.A1701V	ENST00000263388	NM_000435.2	1701	gCg/gTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15374343	15374343	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199679781		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	99	328	0	ENST00000263377.2:c.1229G>A	p.Arg410His	p.R410H	ENST00000263377	NM_058243.2	410	cGt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213358	36213359	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	92	339	0	ENST00000222270.7:c.2561_2562del	p.Glu854AlafsTer34	p.E854Afs*34	ENST00000222270	NM_014727.1	852	aAG/a																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	109	315	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905173	50905173	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41563714		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	131	440	0	ENST00000440232.2:c.455C>T	p.Ala152Val	p.A152V	ENST00000440232	NM_002691.3	152	gCg/gTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222730	5222731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs766222935		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	80	310	0	ENST00000357368.4:c.3072dup	p.Val1025ArgfsTer34	p.V1025Rfs*34	ENST00000357368	NM_002850.3	1024	-/C																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5240271	5240271	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	84	291	0	ENST00000357368.4:c.1643del	p.Pro548ArgfsTer37	p.P548Rfs*37	ENST00000357368	NM_002850.3	548	cCg/cg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	74	365	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164563	36164563	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1340631548		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	75	240	1	ENST00000300305.3:c.1312G>A	p.Gly438Ser	p.G438S	ENST00000300305		438	Ggc/Agc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164863	36164863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	107	327	0	ENST00000300305.3:c.1012G>A	p.Ala338Thr	p.A338T	ENST00000300305		338	Gcg/Acg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446595	29446595	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1236517906		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	87	354	0	ENST00000544604.2:c.2426C>T	p.Thr809Met	p.T809M	ENST00000544604	NM_001206998.1	809	aCg/aTg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458270	12458270	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	223	345	0	ENST00000287820.6:c.892del	p.Leu298CysfsTer38	p.L298Cfs*38	ENST00000287820	NM_015869.4	296	aCc/ac																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	15	319	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	120	296	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																															
RHOA	387	MSKCC	GRCh37	3	49413010	49413010	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519952		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	147	259	0	ENST00000418115.1:c.13C>T	p.Arg5Trp	p.R5W	ENST00000418115	NM_001664.2	5	Cgg/Tgg																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898361	63898369	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCA	GCAGCAGCA	-			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			43	15	23	1	ENST00000295900.6:c.110_118del	p.Gln37_Gln39del	p.Q37_Q39del	ENST00000295900	NM_000333.3	29	cgGCAGCAGCAg/cgg																																																																															
GAB1	2549	MSKCC	GRCh37	4	144258385	144258385	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs777158611		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	42	242	2	ENST00000262994.4:c.50del	p.Pro17ArgfsTer5	p.P17Rfs*5	ENST00000262994	NM_002039.3	15	tCc/tc																																																																															
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	150	383	0	ENST00000257430.4:c.4393_4394dup	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31493321	31493322	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1330233722		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	108	299	0	ENST00000344624.3:c.1834dup	p.Leu612ProfsTer8	p.L612Pfs*8	ENST00000344624		612	ctg/cCtg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31495433	31495433	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	148	285	0	ENST00000344624.3:c.1715del	p.Phe572SerfsTer14	p.F572Sfs*14	ENST00000344624		572	tTc/tc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	152	262	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845959	151845959	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	152	434	0	ENST00000262189.6:c.13053del	p.Lys4351AsnfsTer5	p.K4351Nfs*5	ENST00000262189	NM_170606.2	4351	aaA/aa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873309	151873309	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145953124		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	157	305	0	ENST00000262189.6:c.9229C>T	p.Arg3077Cys	p.R3077C	ENST00000262189	NM_170606.2	3077	Cgt/Tgt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968322	2968323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762770988		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	81	281	2	ENST00000396946.4:c.1663dup	p.Arg555ProfsTer38	p.R555Pfs*38	ENST00000396946	NM_032415.4	555	cgg/cCgg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864800	117864800	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs905123790		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			711	135	240	0	ENST00000297338.2:c.1309C>T	p.Arg437Cys	p.R437C	ENST00000297338	NM_006265.2	437	Cgt/Tgt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372287	55372288	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1170462661		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	142	446	0	ENST00000297316.4:c.983dup	p.Gly331ArgfsTer34	p.G331Rfs*34	ENST00000297316	NM_022454.3	326	cac/caCc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	123	268	0	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499828	8499828	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	51	280	0	ENST00000356435.5:c.2141C>A	p.Pro714His	p.P714H	ENST00000356435		714	cCt/cAt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44970643	44970643	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	79	212	0	ENST00000377967.4:c.4194del	p.Ala1399ProfsTer139	p.A1399Pfs*139	ENST00000377967	NM_021140.2	1398	tCc/tc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175786	176175786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	86	262	0	ENST00000367669.3:c.329G>A	p.Ser110Asn	p.S110N	ENST00000367669	NM_022457.5	110	aGc/aAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099304	27099304	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	123	327	0	ENST00000324856.7:c.3541A>G	p.Arg1181Gly	p.R1181G	ENST00000324856	NM_006015.4	1181	Agg/Ggg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330624	65330624	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	156	317	0	ENST00000342505.4:c.1022T>C	p.Leu341Pro	p.L341P	ENST00000342505	NM_002227.2	341	cTg/cCg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999491	100999491	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	133	371	0	ENST00000325455.5:c.311del	p.Pro104GlnfsTer62	p.P104Qfs*62	ENST00000325455	NM_001202474.3	104	cCa/ca																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577385	64577385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	67	310	0	ENST00000337652.1:c.197G>A	p.Ser66Asn	p.S66N	ENST00000337652	NM_130803.2	66	aGc/aAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942179	71942179	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	39	368	0	ENST00000298229.2:c.1443G>A	p.Trp481Ter	p.W481*	ENST00000298229	NM_001567.3	481	tgG/tgA																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246044	46246044	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	95	379	0	ENST00000334344.6:c.4141del	p.Thr1381LeufsTer5	p.T1381Lfs*5	ENST00000334344	NM_152641.2	1380	Aaa/aa																																																																															
BLM	641	MSKCC	GRCh37	15	91303869	91303871	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	154	339	0	ENST00000355112.3:c.1270_1272del	p.Leu424del	p.L424del	ENST00000355112	NM_000057.2	422	agTCTt/agt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17937649	17937649	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	126	353	0	ENST00000458235.1:c.3278C>A	p.Pro1093His	p.P1093H	ENST00000458235	NM_000215.3	1093	cCc/cAc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945522	17945522	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	26	264	1	ENST00000458235.1:c.2208A>C	p.Gln736His	p.Q736H	ENST00000458235	NM_000215.3	736	caA/caC																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6230615	6230615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	118	313	0	ENST00000252674.7:c.386C>T	p.Thr129Met	p.T129M	ENST00000252674	NM_005934.3	129	aCg/aTg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48023171	48023171	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	149	289	0	ENST00000234420.5:c.596C>A	p.Pro199His	p.P199H	ENST00000234420	NM_000179.2	199	cCc/cAc																																																																															
ERG	2078	MSKCC	GRCh37	21	39755530	39755530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	128	430	1	ENST00000288319.7:c.1235C>A	p.Pro412His	p.P412H	ENST00000288319	NM_182918.3	412	cCc/cAc																																																																															
ATR	545	MSKCC	GRCh37	3	142238559	142238561	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	74	242	0	ENST00000350721.4:c.4332_4334del	p.Arg1445del	p.R1445del	ENST00000350721	NM_001184.3	1444	agGAGa/aga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928245	178928248	+	frameshift_variant	Frame_Shift_Del	DEL	TGAC	TGAC	-			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	110	299	0	ENST00000263967.3:c.1433_1436del	p.Asp478GlyfsTer6	p.D478Gfs*6	ENST00000263967	NM_006218.2	477	ttTGAC/tt																																																																															
MST1	4485	MSKCC	GRCh37	3	49721857	49721857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	28	115	0	ENST00000449682.2:c.1906G>A	p.Ala636Thr	p.A636T	ENST00000449682	NM_020998.3	636	Gcc/Acc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63968100	63968100	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	110	291	0	ENST00000295900.6:c.991T>A	p.Phe331Ile	p.F331I	ENST00000295900	NM_000333.3	331	Ttt/Att																																																																															
GAB1	2549	MSKCC	GRCh37	4	144361523	144361523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	150	298	0	ENST00000262994.4:c.1573C>T	p.Pro525Ser	p.P525S	ENST00000262994	NM_002039.3	525	Cca/Tca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629484	187629484	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	173	372	0	ENST00000441802.2:c.1498T>C	p.Tyr500His	p.Y500H	ENST00000441802	NM_005245.3	500	Tac/Cac																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673139	30673139	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	181	408	0	ENST00000376406.3:c.3821del	p.Asn1274IlefsTer87	p.N1274Ifs*87	ENST00000376406	NM_014641.2	1274	aAt/at																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006161	22006161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	153	439	0	ENST00000276925.6:c.242C>T	p.Thr81Ile	p.T81I	ENST00000276925	NM_004936.3	81	aCc/aTc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882049	36882050	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGG			P-0085699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	59	302	0	ENST00000358127.4:c.961_963dup	p.Pro321dup	p.P321dup	ENST00000358127	NM_001280556.1	321	-/CCC																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0085737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	310	378	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0085737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	84	294	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175226	112175227	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0085737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	92	399	0	ENST00000257430.4:c.3937dup	p.Thr1313AsnfsTer2	p.T1313Nfs*2	ENST00000257430	NM_000038.5	1312	gga/ggAa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266670	41266670	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	127	411	0	ENST00000349496.5:c.467T>A	p.Leu156Gln	p.L156Q	ENST00000349496	NM_001904.3	156	cTg/cAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1222983	1222983	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs398123406		P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	236	416	0	ENST00000326873.7:c.921-1G>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27023735	27023735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	230	463	0	ENST00000324856.7:c.841G>T	p.Ala281Ser	p.A281S	ENST00000324856	NM_006015.4	281	Gcg/Tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	317	533	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563018	21563018	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	125	544	0	ENST00000382592.4:c.901G>T	p.Gly301Cys	p.G301C	ENST00000382592	NM_014572.2	301	Ggc/Tgc																																																																															
HGF	3082	MSKCC	GRCh37	7	81392050	81392050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	179	320	0	ENST00000222390.5:c.227G>A	p.Arg76Lys	p.R76K	ENST00000222390	NM_000601.4	76	aGg/aAg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836312	89836312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			961	174	595	0	ENST00000389301.3:c.2437C>T	p.Pro813Ser	p.P813S	ENST00000389301	NM_000135.2	813	Cct/Tct																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270169	66270169	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	249	313	0	ENST00000273854.3:c.1713G>T	p.Gln571His	p.Q571H	ENST00000273854	NM_004439.5	571	caG/caT																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618494	37618494	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			857	158	513	0	ENST00000447079.4:c.174del	p.Glu59LysfsTer33	p.E59Kfs*33	ENST00000447079	NM_015083.1	57	aCc/ac																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520158	9520158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	101	379	0	ENST00000353224.5:c.2111G>T	p.Gly704Val	p.G704V	ENST00000353224	NM_177990.2	704	gGt/gTt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223535	2223535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			769	138	557	0	ENST00000326181.6:c.1066C>T	p.Arg356Trp	p.R356W	ENST00000326181	NM_032271.2	356	Cgg/Tgg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149504328	149504328	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	214	391	0	ENST00000261799.4:c.1874C>A	p.Ser625Tyr	p.S625Y	ENST00000261799	NM_002609.3	625	tCt/tAt																																																																															
NUF2	83540	MSKCC	GRCh37	1	163307858	163307858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	182	330	0	ENST00000271452.3:c.484G>A	p.Ala162Thr	p.A162T	ENST00000271452	NM_145697.2	162	Gca/Aca																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935655	13935655	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	197	432	0	ENST00000405192.2:c.1201A>G	p.Met401Val	p.M401V	ENST00000405192	NM_001163147.1	401	Atg/Gtg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3795278	3795278	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	135	408	0	ENST00000262367.5:c.3914G>T	p.Gly1305Val	p.G1305V	ENST00000262367	NM_004380.2	1305	gGt/gTt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714369	40714369	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	220	452	0	ENST00000373198.4:c.4028G>T	p.Arg1343Leu	p.R1343L	ENST00000373198	NM_133170.3	1343	cGg/cTg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131911560	131911560	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	204	331	0	ENST00000265335.6:c.305G>T	p.Cys102Phe	p.C102F	ENST00000265335		102	tGt/tTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040794	47040794	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	170	268	0	ENST00000329236.7:c.1195G>T	p.Gly399Ter	p.G399*	ENST00000329236	NM_001204466.1	399	Gga/Tga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610097	10610097	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	137	418	0	ENST00000171111.5:c.613G>T	p.Glu205Ter	p.E205*	ENST00000171111	NM_203500.1	205	Gag/Tag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526746	31526746	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	100	417	0	ENST00000344624.3:c.294C>G	p.Ile98Met	p.I98M	ENST00000344624		98	atC/atG																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89176352	89176381	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTTTAGTCAATCTACTGGATTCAAAAACA	ATTTTAGTCAATCTACTGGATTCAAAAACA	-			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	37	263	0	ENST00000336596.2:c.89-4_114del		p.X30_splice	ENST00000336596	NM_005233.5	30																																																																																
FAM58A	92002	MSKCC	GRCh37	X	152861466	152861466	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	129	198	0	ENST00000406277.2:c.286A>T	p.Asn96Tyr	p.N96Y	ENST00000406277	NM_152274.4	96	Aac/Tac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912790	32912790	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	141	398	0	ENST00000380152.3:c.4298G>C	p.Gly1433Ala	p.G1433A	ENST00000380152		1433	gGg/gCg																																																																															
POLE	5426	MSKCC	GRCh37	12	133209327	133209327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			855	135	487	0	ENST00000320574.5:c.6059C>T	p.Pro2020Leu	p.P2020L	ENST00000320574	NM_006231.2	2020	cCa/cTa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361229	66361229	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	112	403	0	ENST00000273854.3:c.943C>A	p.His315Asn	p.H315N	ENST00000273854	NM_004439.5	315	Cac/Aac																																																																															
DIS3	22894	MSKCC	GRCh37	13	73350183	73350183	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	78	316	0	ENST00000377767.4:c.702A>T	p.Leu234Phe	p.L234F	ENST00000377767	NM_014953.3	234	ttA/ttT																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31451676	31451676	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	153	294	0	ENST00000344624.3:c.2646G>C	p.Leu882Phe	p.L882F	ENST00000344624		882	ttG/ttC																																																																															
FYN	2534	MSKCC	GRCh37	6	112020718	112020718	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1488200068		P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	97	361	0	ENST00000368678.4:c.853G>T	p.Gly285Cys	p.G285C	ENST00000368678		285	Ggt/Tgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133209367	133209367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	212	447	0	ENST00000320574.5:c.6019G>A	p.Val2007Met	p.V2007M	ENST00000320574	NM_006231.2	2007	Gtg/Atg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101136	41101136	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	225	465	0	ENST00000373198.4:c.1220G>C	p.Trp407Ser	p.W407S	ENST00000373198	NM_133170.3	407	tGg/tCg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117724427	117724427	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	119	432	0	ENST00000368508.3:c.452C>A	p.Pro151Gln	p.P151Q	ENST00000368508	NM_002944.2	151	cCg/cAg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	394642	394642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	230	405	0	ENST00000399788.2:c.5053G>T	p.Asp1685Tyr	p.D1685Y	ENST00000399788	NM_001042603.1	1685	Gat/Tat																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256348	16256349	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTAGCCTCGTTCACGAGGTAGGCAAACCCCCTCAA			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			814	82	497	0	ENST00000375759.3:c.3615_3649dup	p.Asp1217ValfsTer7	p.D1217Vfs*7	ENST00000375759	NM_015001.2	1205	cgt/cGTAGCCTCGTTCACGAGGTAGGCAAACCCCCTCAAgt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742013	145742013	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1030	152	538	0	ENST00000428558.2:c.490G>C	p.Glu164Gln	p.E164Q	ENST00000428558	NM_004260.3	164	Gag/Cag																																																																															
KDR	3791	MSKCC	GRCh37	4	55964928	55964929	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	149	293	0	ENST00000263923.4:c.2308_2309delinsTT	p.Gly770Phe	p.G770F	ENST00000263923	NM_002253.2	770	GGc/TTc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26978126	26978126	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	105	359	0	ENST00000381527.3:c.1303G>T	p.Gly435Ter	p.G435*	ENST00000381527	NM_001260.1	435	Gga/Tga																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865110	57865110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	239	459	0	ENST00000228682.2:c.2587G>T	p.Gly863Cys	p.G863C	ENST00000228682	NM_005269.2	863	Ggc/Tgc																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61305018	61305018	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	214	334	0	ENST00000341074.5:c.1108C>G	p.Leu370Val	p.L370V	ENST00000341074	NM_002974.2	370	Cta/Gta																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72076799	72076800	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			795	116	439	0	ENST00000357731.5:c.697_698delinsCT	p.Gly233Leu	p.G233L	ENST00000357731	NM_173808.2	233	GGc/CTc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798405	32798405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			918	71	500	0	ENST00000374899.4:c.1451C>T	p.Pro484Leu	p.P484L	ENST00000374899	NM_018833.2	484	cCt/cTt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112495	115112495	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			765	96	474	0	ENST00000257566.3:c.1245C>A	p.His415Gln	p.H415Q	ENST00000257566	NM_016569.3	415	caC/caA																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112194	115112194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	232	530	0	ENST00000257566.3:c.1546C>A	p.His516Asn	p.H516N	ENST00000257566	NM_016569.3	516	Cac/Aac																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563240	21563240	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	151	566	0	ENST00000382592.4:c.679C>T	p.Gln227Ter	p.Q227*	ENST00000382592	NM_014572.2	227	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524077	187524077	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	112	393	0	ENST00000441802.2:c.11462del	p.Gly3821AlafsTer12	p.G3821Afs*12	ENST00000441802	NM_005245.3	3821	gGc/gc																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551908	150551909	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			959	93	470	0	ENST00000369026.2:c.98_99delinsTT	p.Gly33Val	p.G33V	ENST00000369026	NM_021960.4	33	gGG/gTT																																																																															
MET	4233	MSKCC	GRCh37	7	116380139	116380139	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	114	386	0	ENST00000397752.3:c.1527+1G>T		p.X509_splice	ENST00000397752	NM_000245.2	509																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41400074	41400074	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	92	326	0	ENST00000373198.4:c.684+1G>T		p.X228_splice	ENST00000373198	NM_133170.3	228																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72845883	72845883	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	99	458	0	ENST00000268489.5:c.3584G>C	p.Arg1195Pro	p.R1195P	ENST00000268489	NM_006885.3	1195	cGc/cCc																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792623	33792623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	113	216	0	ENST00000498907.2:c.698C>G	p.Pro233Arg	p.P233R	ENST00000498907	NM_004364.3	233	cCc/cGc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349594	15349594	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	270	504	0	ENST00000263377.2:c.3980T>C	p.Leu1327Ser	p.L1327S	ENST00000263377	NM_058243.2	1327	tTg/tCg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256390	16256396	+	frameshift_variant	Frame_Shift_Del	DEL	ACTGATG	ACTGATG	-			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			794	97	563	0	ENST00000375759.3:c.3658_3664del	p.Asp1220LeufsTer55	p.D1220Lfs*55	ENST00000375759	NM_015001.2	1219	ACTGATGac/ac																																																																															
TERT	7015	MSKCC	GRCh37	5	1294484	1294484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	238	530	0	ENST00000310581.5:c.517C>G	p.Pro173Ala	p.P173A	ENST00000310581	NM_198253.2	173	Ccg/Gcg																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551670	150551670	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			826	125	402	0	ENST00000369026.2:c.337G>T	p.Ala113Ser	p.A113S	ENST00000369026	NM_021960.4	113	Gcc/Tcc																																																																															
MSI2	124540	MSKCC	GRCh37	17	55729516	55729516	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	218	423	0	ENST00000284073.2:c.784G>T	p.Gly262Ter	p.G262*	ENST00000284073	NM_138962.2	262	Gga/Tga																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100009	30100009	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	234	414	0	ENST00000331968.5:c.1611G>T	p.Gln537His	p.Q537H	ENST00000331968	NM_002742.2	537	caG/caT																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348746	89348746	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			826	138	537	0	ENST00000301030.4:c.4204T>A	p.Tyr1402Asn	p.Y1402N	ENST00000301030	NM_001256183.1	1402	Tac/Aac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857298	9857299	+	missense_variant	Missense_Mutation	DNP	AG	AG	GA			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			747	119	544	0	ENST00000330684.3:c.4102_4103delinsTC	p.Leu1368Ser	p.L1368S	ENST00000330684	NM_001134407.1	1368	CTc/TCc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389365	8389365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	168	329	0	ENST00000356435.5:c.4253G>T	p.Gly1418Val	p.G1418V	ENST00000356435		1418	gGg/gTg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59853762	59853762	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	163	289	0	ENST00000259008.2:c.2097G>T	p.Lys699Asn	p.K699N	ENST00000259008	NM_032043.2	699	aaG/aaT																																																																															
PPARG	5468	MSKCC	GRCh37	3	12475530	12475530	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	357	440	0	ENST00000287820.6:c.1404del	p.Asp469ThrfsTer15	p.D469Tfs*15	ENST00000287820	NM_015869.4	468	acA/ac																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508697	106508697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			785	134	499	0	ENST00000359195.3:c.691C>A	p.Gln231Lys	p.Q231K	ENST00000359195	NM_002649.2	231	Cag/Aag																																																																															
PIM1	5292	MSKCC	GRCh37	6	37140870	37140871	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			785	270	502	0	ENST00000373509.5:c.711_712del	p.Cys237TrpfsTer8	p.C237Wfs*8	ENST00000373509	NM_002648.3	236	GTg/g																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72076787	72076787	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	364	445	0	ENST00000357731.5:c.710C>G	p.Pro237Arg	p.P237R	ENST00000357731	NM_173808.2	237	cCc/cGc																																																																															
TET1	80312	MSKCC	GRCh37	10	70333290	70333290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	133	463	0	ENST00000373644.4:c.1195C>A	p.Pro399Thr	p.P399T	ENST00000373644	NM_030625.2	399	Cct/Act																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170543	11170543	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	306	578	0	ENST00000344626.4:c.4750G>T	p.Glu1584Ter	p.E1584*	ENST00000344626	NM_003072.3	1584	Gaa/Taa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21628703	21628703	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	173	356	0	ENST00000421138.2:c.1005G>T	p.Gln335His	p.Q335H	ENST00000421138		335	caG/caT																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47425432	47425432	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			742	263	516	0	ENST00000404338.3:c.3500G>T	p.Arg1167Leu	p.R1167L	ENST00000404338	NM_004491.4	1167	cGg/cTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41536260	41536260	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	115	335	0	ENST00000263253.7:c.1877G>T	p.Arg626Leu	p.R626L	ENST00000263253	NM_001429.3	626	cGa/cTa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65351943	65351943	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0085754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	146	272	0	ENST00000342505.4:c.5A>T	p.Gln2Leu	p.Q2L	ENST00000342505	NM_002227.2	2	cAg/cTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0085783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	95	465	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0085783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	98	524	1	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0085783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			78	96	295	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																															
MDC1	9656	MSKCC	GRCh37	6	30682856	30682856	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113702536		P-0085783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	109	427	0	ENST00000376406.3:c.97C>T	p.Arg33Trp	p.R33W	ENST00000376406	NM_014641.2	33	Cgg/Tgg																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111921773	111921773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765527733		P-0085783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	109	375	0	ENST00000393256.3:c.562C>T	p.Arg188Cys	p.R188C	ENST00000393256	NM_006538.4	188	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112174424	112174424	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0085783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	107	469	0	ENST00000257430.4:c.3133C>T	p.Gln1045Ter	p.Q1045*	ENST00000257430	NM_000038.5	1045	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0085783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	99	341	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553533	106553533	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	106	512	0	ENST00000369096.4:c.1498G>C	p.Gly500Arg	p.G500R	ENST00000369096	NM_001198.3	500	Ggg/Cgg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119777	70119790	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAGGGGGGCAGA	CAGAGGGGGGCAGA	-			P-0085783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	87	360	0	ENST00000245479.2:c.782_795del	p.Glu261AlafsTer30	p.E261Afs*30	ENST00000245479	NM_000346.3	260	cCAGAGGGGGGCAGA/c																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259287	89259287	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	66	511	0	ENST00000336596.2:c.431A>G	p.Asp144Gly	p.D144G	ENST00000336596	NM_005233.5	144	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786202962		P-0085788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	230	473	1	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
CALR	811	MSKCC	GRCh37	19	13051645	13051645	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375135016		P-0085788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	208	364	0	ENST00000316448.5:c.904G>A	p.Asp302Asn	p.D302N	ENST00000316448	NM_004343.3	302	Gat/Aat																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553533	106553533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	190	446	0	ENST00000369096.4:c.1498G>A	p.Gly500Arg	p.G500R	ENST00000369096	NM_001198.3	500	Ggg/Agg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741406	17741406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs993043194		P-0085788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	99	380	0	ENST00000250003.3:c.77C>T	p.Thr26Met	p.T26M	ENST00000250003	NM_002478.4	26	aCg/aTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251596	212251596	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1170963831		P-0085788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	84	367	0	ENST00000342788.4:c.3463C>T	p.Arg1155Ter	p.R1155*	ENST00000342788	NM_005235.2	1155	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175241	112175241	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0085788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	249	409	0	ENST00000257430.4:c.3951del	p.Asp1318IlefsTer3	p.D1318Ifs*3	ENST00000257430	NM_000038.5	1317	gAa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0085788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	84	259	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78681711	78681711	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	98	332	0	ENST00000306801.3:c.419A>G	p.Asn140Ser	p.N140S	ENST00000306801	NM_020761.2	140	aAc/aGc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94204801	94204801	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	42	353	0	ENST00000323929.3:c.784T>C	p.Tyr262His	p.Y262H	ENST00000323929	NM_005591.3	262	Tat/Cat																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0085799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	187	336	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
EZH2	2146	MSKCC	GRCh37	7	148524277	148524277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	35	264	0	ENST00000320356.2:c.707C>T	p.Thr236Ile	p.T236I	ENST00000320356	NM_004456.4	236	aCa/aTa																																																																															
FH	2271	MSKCC	GRCh37	1	241661270	241661270	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	129	347	0	ENST00000366560.3:c.1391G>T	p.Gly464Val	p.G464V	ENST00000366560	NM_000143.3	464	gGg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106616	27106616	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	101	637	0	ENST00000324856.7:c.6227A>T	p.Tyr2076Phe	p.Y2076F	ENST00000324856	NM_006015.4	2076	tAc/tTc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	82	533	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520017		P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	166	603	0	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106621	27106621	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	103	668	0	ENST00000324856.7:c.6232G>T	p.Glu2078Ter	p.E2078*	ENST00000324856	NM_006015.4	2078	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578254	7578254	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	147	739	0	ENST00000269305.4:c.595G>T	p.Gly199Ter	p.G199*	ENST00000269305	NM_001126112.2	199	Gga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812340	212812340	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	69	450	0	ENST00000342788.4:c.236C>A	p.Ser79Tyr	p.S79Y	ENST00000342788	NM_005235.2	79	tCt/tAt																																																																															
CD274	29126	MSKCC	GRCh37	9	5462858	5462858	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs747598352		P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	90	458	0	ENST00000381577.3:c.419G>C	p.Arg140Thr	p.R140T	ENST00000381577	NM_014143.3	140	aGa/aCa																																																																															
MGA	23269	MSKCC	GRCh37	15	42041704	42041704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	140	652	0	ENST00000219905.7:c.5899C>T	p.Gln1967Ter	p.Q1967*	ENST00000219905	NM_001164273.1	1967	Cag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41514459	41514459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	118	485	0	ENST00000373198.4:c.202G>T	p.Ala68Ser	p.A68S	ENST00000373198	NM_133170.3	68	Gca/Tca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151841846	151841846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	121	542	0	ENST00000262189.6:c.14295G>A	p.Met4765Ile	p.M4765I	ENST00000262189	NM_170606.2	4765	atG/atA																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43749781	43749781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	44	583	0	ENST00000523873.1:c.634C>T	p.Arg212Cys	p.R212C	ENST00000523873		212	Cgt/Tgt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248156	110248156	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	94	481	0	ENST00000374672.4:c.1316G>T	p.Arg439Leu	p.R439L	ENST00000374672	NM_004235.4	439	cGc/cTc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216379	2216379	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	178	625	0	ENST00000398665.3:c.2023G>T	p.Gly675Trp	p.G675W	ENST00000398665	NM_032482.2	675	Ggg/Tgg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868137	56868137	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	178	680	0	ENST00000308159.5:c.1635G>C	p.Arg545Ser	p.R545S	ENST00000308159	NM_014669.4	545	agG/agC																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38959881	38959881	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	146	476	0	ENST00000357387.3:c.2051G>A	p.Cys684Tyr	p.C684Y	ENST00000357387	NM_152756.3	684	tGt/tAt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39644703	39644703	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	35	359	0	ENST00000262039.4:c.2433-1G>T		p.X811_splice	ENST00000262039	NM_002647.2	811																																																																																
ETV1	2115	MSKCC	GRCh37	7	13946198	13946198	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	55	470	0	ENST00000405192.2:c.898T>A	p.Tyr300Asn	p.Y300N	ENST00000405192	NM_001163147.1	300	Tat/Aat																																																																															
ATM	472	MSKCC	GRCh37	11	108124737	108124737	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	145	533	0	ENST00000278616.4:c.2095G>T	p.Glu699Ter	p.E699*	ENST00000278616	NM_000051.3	699	Gaa/Taa																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64288923	64288923	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	112	428	0	ENST00000370651.3:c.319G>T	p.Gly107Cys	p.G107C	ENST00000370651	NM_003463.4	107	Ggc/Tgc																																																																															
GAB1	2549	MSKCC	GRCh37	4	144361332	144361332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	52	649	0	ENST00000262994.4:c.1382G>T	p.Ser461Ile	p.S461I	ENST00000262994	NM_002039.3	461	aGc/aTc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563266	21563266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	92	692	0	ENST00000382592.4:c.653G>T	p.Gly218Val	p.G218V	ENST00000382592	NM_014572.2	218	gGa/gTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340342	8340342	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	35	560	0	ENST00000356435.5:c.5253+1G>A		p.X1751_splice	ENST00000356435		1751																																																																																
AMER1	139285	MSKCC	GRCh37	X	63410604	63410604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	39	368	0	ENST00000330258.3:c.2563C>T	p.His855Tyr	p.H855Y	ENST00000330258	NM_152424.3	855	Cat/Tat																																																																															
MPL	4352	MSKCC	GRCh37	1	43803860	43803860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	104	565	0	ENST00000372470.3:c.170C>A	p.Ala57Glu	p.A57E	ENST00000372470	NM_005373.2	57	gCa/gAa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176105663	176105663	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	48	373	0	ENST00000367669.3:c.852G>T	p.Lys284Asn	p.K284N	ENST00000367669	NM_022457.5	284	aaG/aaT																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256598	16256598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	62	676	0	ENST00000375759.3:c.3863C>T	p.Pro1288Leu	p.P1288L	ENST00000375759	NM_015001.2	1288	cCt/cTt																																																																															
HGF	3082	MSKCC	GRCh37	7	81358982	81358982	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	185	435	0	ENST00000222390.5:c.979C>T	p.Gln327Ter	p.Q327*	ENST00000222390	NM_000601.4	327	Cag/Tag																																																																															
AR	367	MSKCC	GRCh37	X	66766118	66766118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			67	80	316	0	ENST00000374690.3:c.1130C>T	p.Pro377Leu	p.P377L	ENST00000374690	NM_000044.3	377	cCt/cTt																																																																															
MPL	4352	MSKCC	GRCh37	1	43812183	43812183	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	98	619	1	ENST00000372470.3:c.1048T>A	p.Ser350Thr	p.S350T	ENST00000372470	NM_005373.2	350	Tct/Act																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540198	23540198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	35	541	0	ENST00000380871.4:c.205G>T	p.Ala69Ser	p.A69S	ENST00000380871	NM_006167.3	69	Gcc/Tcc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971038	21971038	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	116	560	0	ENST00000304494.5:c.320G>T	p.Arg107Leu	p.R107L	ENST00000304494	NM_000077.4	107	cGc/cTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602642	10602642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	109	651	0	ENST00000171111.5:c.936G>T	p.Lys312Asn	p.K312N	ENST00000171111	NM_203500.1	312	aaG/aaT																																																																															
ERG	2078	MSKCC	GRCh37	21	39817330	39817330	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	119	489	0	ENST00000288319.7:c.233C>A	p.Ser78Ter	p.S78*	ENST00000288319	NM_182918.3	78	tCa/tAa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117384	115117384	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	21	586	0	ENST00000257566.3:c.790C>A	p.Pro264Thr	p.P264T	ENST00000257566	NM_016569.3	264	Cct/Act																																																																															
MALT1	10892	MSKCC	GRCh37	18	56390473	56390473	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	41	392	0	ENST00000348428.3:c.1212G>T	p.Lys404Asn	p.K404N	ENST00000348428	NM_006785.3	404	aaG/aaT																																																																															
PGR	5241	MSKCC	GRCh37	11	100999183	100999183	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs567928186		P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	20	695	0	ENST00000325455.5:c.619G>A	p.Gly207Arg	p.G207R	ENST00000325455	NM_001202474.3	207	Ggg/Agg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160570	56160570	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	121	562	0	ENST00000399503.3:c.845del	p.Gly282AlafsTer30	p.G282Afs*30	ENST00000399503	NM_005921.1	282	Ggc/gc																																																																															
APC	324	MSKCC	GRCh37	5	112178918	112178918	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	142	586	0	ENST00000257430.4:c.7627A>G	p.Arg2543Gly	p.R2543G	ENST00000257430	NM_000038.5	2543	Agg/Ggg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78935195	78935195	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	185	493	0	ENST00000306801.3:c.3607C>T	p.Arg1203Cys	p.R1203C	ENST00000306801	NM_020761.2	1203	Cgc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42000365	42000367	+	missense_variant	Missense_Mutation	ONP	GGA	GGA	TGG			P-0085834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	119	414	0	ENST00000219905.7:c.2384_2386delinsTGG	p.Trp795_Arg796delinsLeuGly	p.W795_R796delinsLG	ENST00000219905	NM_001164273.1	795	tGGAgg/tTGGgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0085838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	260	671	0	ENST00000269305.4:c.321C>G	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taG																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015177	37015177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	62	561	0	ENST00000358127.4:c.227G>A	p.Gly76Glu	p.G76E	ENST00000358127	NM_001280556.1	76	gGa/gAa																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78432432	78432432	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	63	471	0	ENST00000370768.2:c.419G>T	p.Ser140Ile	p.S140I	ENST00000370768	NM_003902.3	140	aGt/aTt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280139	66280139	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	36	525	0	ENST00000273854.3:c.1550T>C	p.Ile517Thr	p.I517T	ENST00000273854	NM_004439.5	517	aTt/aCt																																																																															
MGA	23269	MSKCC	GRCh37	15	41989127	41989127	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	66	576	0	ENST00000219905.7:c.1919A>G	p.Lys640Arg	p.K640R	ENST00000219905	NM_001164273.1	640	aAg/aGg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860764	151860764	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	135	700	0	ENST00000262189.6:c.9898A>T	p.Ser3300Cys	p.S3300C	ENST00000262189	NM_170606.2	3300	Agc/Tgc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865455	57865455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	137	702	0	ENST00000228682.2:c.2932G>T	p.Ala978Ser	p.A978S	ENST00000228682	NM_005269.2	978	Gca/Tca																																																																															
AKT2	208	MSKCC	GRCh37	19	40747862	40747862	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0085838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	144	661	0	ENST00000392038.2:c.556G>T	p.Glu186Ter	p.E186*	ENST00000392038	NM_001626.4	186	Gaa/Taa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751526	57751526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	110	557	0	ENST00000274289.3:c.1465G>A	p.Ala489Thr	p.A489T	ENST00000274289	NM_006622.3	489	Gct/Act																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37872139	37872139	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	108	728	0	ENST00000269571.5:c.1460G>T	p.Arg487Leu	p.R487L	ENST00000269571		487	cGg/cTg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46271085	46271085	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	66	546	0	ENST00000371998.3:c.3209A>C	p.Glu1070Ala	p.E1070A	ENST00000371998		1070	gAa/gCa																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679482	33679482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	41	333	0	ENST00000308377.4:c.2599G>A	p.Gly867Arg	p.G867R	ENST00000308377	NM_152270.3	867	Ggg/Agg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274339	5274339	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	91	503	0	ENST00000357368.4:c.108C>G	p.Ile36Met	p.I36M	ENST00000357368	NM_002850.3	36	atC/atG																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2029025	2029025	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0085838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	490	694	0	ENST00000349721.2:c.3G>T	p.Met1?	p.M1?	ENST00000349721	NM_003070.3	1	atG/atT																																																																															
RB1	5925	MSKCC	GRCh37	13	48954374	48954377	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AGCA	AGCA	-			P-0085838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			63	46	438	0	ENST00000267163.4:c.1495_1498del	p.Ser499GlufsTer19	p.S499Efs*19	ENST00000267163	NM_000321.2	499	AGCAga/ga																																																																															
POLE	5426	MSKCC	GRCh37	12	133257867	133257867	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0085838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	131	670	0	ENST00000320574.5:c.63-2A>T		p.X21_splice	ENST00000320574	NM_006231.2	21																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27023151	27023179	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	-			P-0085848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	56	348	0	ENST00000324856.7:c.267_295del	p.Ser90ProfsTer11	p.S90Pfs*11	ENST00000324856	NM_006015.4	86	gGCGGAGCCGGCAGCGGCGGCGGGCCCGGC/g																																																																															
RET	5979	MSKCC	GRCh37	10	43617398	43617398	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs78347871		P-0085848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	49	397	0	ENST00000355710.3:c.2735G>A	p.Arg912Gln	p.R912Q	ENST00000355710	NM_020975.4	912	cGg/cAg																																																																															
CBL	867	MSKCC	GRCh37	11	119146718	119146718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	87	464	0	ENST00000264033.4:c.881G>A	p.Arg294Gln	p.R294Q	ENST00000264033	NM_005188.3	294	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0085848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	117	310	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
KLF5	688	MSKCC	GRCh37	13	73636639	73636639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			942	245	638	0	ENST00000377687.4:c.902C>T	p.Pro301Leu	p.P301L	ENST00000377687	NM_001730.3	301	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0085848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	181	595	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	114	477	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0085848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	185	388	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
PARP1	142	MSKCC	GRCh37	1	226568778	226568778	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0085848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	82	422	0	ENST00000366794.5:c.1291A>C	p.Ser431Arg	p.S431R	ENST00000366794	NM_001618.3	431	Agc/Cgc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15942866	15942866	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	150	410	0	ENST00000268712.3:c.6836T>C	p.Val2279Ala	p.V2279A	ENST00000268712	NM_006311.3	2279	gTt/gCt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119941	70119941	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0085848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	135	378	0	ENST00000245479.2:c.943del	p.Tyr315ThrfsTer68	p.Y315Tfs*68	ENST00000245479	NM_000346.3	315	Tac/ac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0085850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	103	373	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0085850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	190	411	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0085921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	92	250	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0085921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	205	456	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604773	48604773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	209	398	0	ENST00000342988.3:c.1595C>A	p.Ala532Asp	p.A532D	ENST00000342988	NM_005359.5	532	gCc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0085921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	44	289	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0085921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	184	447	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371807	55371807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	343	365	0	ENST00000297316.4:c.497C>T	p.Ala166Val	p.A166V	ENST00000297316	NM_022454.3	166	gCg/gTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69136816	69136816	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200020354		P-0085921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	295	296	0	ENST00000288368.4:c.4730C>T	p.Ala1577Val	p.A1577V	ENST00000288368	NM_024870.2	1577	gCg/gTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411411	63411411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0085921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	225	246	0	ENST00000330258.3:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000330258	NM_152424.3	586	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0085926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			777	32	362	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
NADK	65220	MSKCC	GRCh37	1	1696821	1696821	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	37	301	0	ENST00000341426.5:c.25A>T	p.Thr9Ser	p.T9S	ENST00000341426	NM_023018.4	9	Acc/Tcc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690802	89690802	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs1114167621		P-0085926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	16	224	1	ENST00000371953.3:c.210-1G>T		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																																
POT1	25913	MSKCC	GRCh37	7	124511090	124511092	+	inframe_deletion	In_Frame_Del	DEL	AAT	AAT	-			P-0085926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	15	303	0	ENST00000357628.3:c.128_130del	p.Tyr43del	p.Y43del	ENST00000357628	NM_015450.2	43	tATTgc/tgc																																																																															
SMO	6608	MSKCC	GRCh37	7	128850367	128850371	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTG	ATCTG	-			P-0085926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	47	341	0	ENST00000249373.3:c.1630_1634del	p.Ile544GlufsTer12	p.I544Efs*12	ENST00000249373	NM_005631.4	544	ATCTGg/g																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735510	40735510	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			747	52	414	0	ENST00000373198.4:c.3363C>A	p.Asp1121Glu	p.D1121E	ENST00000373198	NM_133170.3	1121	gaC/gaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0085929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	15	277	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0085929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	79	424	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0085929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	26	430	1	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370802	55370802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	32	414	0	ENST00000297316.4:c.104C>T	p.Ser35Leu	p.S35L	ENST00000297316	NM_022454.3	35	tCg/tTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266861	41266861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	38	478	0	ENST00000349496.5:c.532C>T	p.Leu178Phe	p.L178F	ENST00000349496	NM_001904.3	178	Ctt/Ttt																																																																															
MET	4233	MSKCC	GRCh37	7	116409772	116409772	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	26	418	0	ENST00000397752.3:c.2657A>G	p.His886Arg	p.H886R	ENST00000397752	NM_000245.2	886	cAc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0085931-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	298	468	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859016	57859016	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765428970		P-0085931-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	215	348	0	ENST00000228682.2:c.512G>A	p.Arg171Gln	p.R171Q	ENST00000228682	NM_005269.2	171	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175215	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0085931-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	420	367	0	ENST00000257430.4:c.3925_3926del	p.Glu1309LysfsTer5	p.E1309Kfs*5	ENST00000257430	NM_000038.5	1308	aaAGaa/aaaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0085931-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	130	286	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2086950	2086950	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs281875188		P-0085931-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	209	466	0	ENST00000349721.2:c.2648C>T	p.Pro883Leu	p.P883L	ENST00000349721	NM_003070.3	883	cCg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739046	40739046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085931-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	238	418	0	ENST00000373198.4:c.3238G>A	p.Gly1080Ser	p.G1080S	ENST00000373198	NM_133170.3	1080	Ggc/Agc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			81	31	237	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs869025608		P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			69	39	425	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																															
MET	4233	MSKCC	GRCh37	7	116371903	116371903	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs544274181		P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	12	404	0	ENST00000397752.3:c.1382G>A	p.Arg461His	p.R461H	ENST00000397752	NM_000245.2	461	cGc/cAc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			64	62	411	0	ENST00000262160.6:c.1391C>A	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	43	487	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs794727798		P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	9	391	0	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158622516	158622516	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs387906589		P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	18	388	0	ENST00000263640.3:c.983G>T	p.Gly328Val	p.G328V	ENST00000263640	NM_001105.4	328	gGg/gTg																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006224	22006224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			74	102	604	0	ENST00000276925.6:c.179G>A	p.Arg60His	p.R60H	ENST00000276925	NM_004936.3	60	cGc/cAc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39708807	39708807	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	42	340	0	ENST00000361337.2:c.418C>T	p.Arg140Ter	p.R140*	ENST00000361337	NM_003286.2	140	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175909	112175909	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	32	503	0	ENST00000257430.4:c.4618G>T	p.Glu1540Ter	p.E1540*	ENST00000257430	NM_000038.5	1540	Gag/Tag																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610413	81610413	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	15	506	0	ENST00000298171.2:c.2011T>C	p.Ser671Pro	p.S671P	ENST00000298171	NM_000369.2	671	Tcc/Ccc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133364	38133364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	27	512	0	ENST00000317025.8:c.4109G>A	p.Cys1370Tyr	p.C1370Y	ENST00000317025	NM_023034.1	1370	tGc/tAc																																																																															
TET2	54790	MSKCC	GRCh37	4	106157433	106157433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	26	515	0	ENST00000380013.4:c.2334G>T	p.Gln778His	p.Q778H	ENST00000380013	NM_001127208.2	778	caG/caT																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46583322	46583322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	30	271	0	ENST00000263734.3:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000263734	NM_001430.4	84	Gac/Tac																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477189	67477189	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	57	471	0	ENST00000327367.4:c.996C>A	p.Cys332Ter	p.C332*	ENST00000327367	NM_005902.3	332	tgC/tgA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411987	63411987	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			71	35	612	0	ENST00000330258.3:c.1180G>T	p.Glu394Ter	p.E394*	ENST00000330258	NM_152424.3	394	Gaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108202702	108202702	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	40	407	0	ENST00000278616.4:c.7726G>T	p.Glu2576Ter	p.E2576*	ENST00000278616	NM_000051.3	2576	Gag/Tag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218611	36218611	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	69	566	0	ENST00000222270.7:c.4315G>T	p.Gly1439Trp	p.G1439W	ENST00000222270	NM_014727.1	1439	Ggg/Tgg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39729969	39729969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	27	415	1	ENST00000361337.2:c.1284G>T	p.Met428Ile	p.M428I	ENST00000361337	NM_003286.2	428	atG/atT																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125514150	125514150	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	28	416	0	ENST00000428830.2:c.1088C>A	p.Pro363Gln	p.P363Q	ENST00000428830	NM_001114121.2	363	cCa/cAa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99204027	99204027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			91	23	395	0	ENST00000074304.5:c.2890C>A	p.His964Asn	p.H964N	ENST00000074304	NM_001134224.1	964	Cat/Aat																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146928	38146928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	21	415	0	ENST00000317025.8:c.3214C>A	p.Pro1072Thr	p.P1072T	ENST00000317025	NM_023034.1	1072	Ccc/Acc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120343	70120343	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	101	492	0	ENST00000245479.2:c.1345del	p.Ser449AlafsTer21	p.S449Afs*21	ENST00000245479	NM_000346.3	449	Agc/gc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822712	72822712	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	20	465	0	ENST00000268489.5:c.9463C>A	p.Pro3155Thr	p.P3155T	ENST00000268489	NM_006885.3	3155	Ccc/Acc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178424	56178424	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	39	423	1	ENST00000399503.3:c.3397G>T	p.Glu1133Ter	p.E1133*	ENST00000399503	NM_005921.1	1133	Gag/Tag																																																																															
CASP8	841	MSKCC	GRCh37	2	202149706	202149706	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	37	526	0	ENST00000358485.4:c.1147T>G	p.Tyr383Asp	p.Y383D	ENST00000358485	NM_001080125.1	383	Tat/Gat																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67358515	67358519	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCC	CTCCC	-			P-0085943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	19	437	0	ENST00000327367.4:c.24_28del	p.Pro9AspfsTer100	p.P9Dfs*100	ENST00000327367	NM_005902.3	8	aCTCCC/a																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	30	586	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	40	638	2	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429957	78429957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	78	503	0	ENST00000370768.2:c.922C>T	p.Arg308Cys	p.R308C	ENST00000370768	NM_003902.3	308	Cgc/Tgc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074435	8074435	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs980250925		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	24	429	0	ENST00000377482.5:c.224C>T	p.Pro75Leu	p.P75L	ENST00000377482	NM_018948.3	75	cCg/cTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912189	114912189	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867720073		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	43	348	0	ENST00000543371.1:c.1259G>A	p.Arg420Gln	p.R420Q	ENST00000543371	NM_001198531.1	420	cGg/cAg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	26	562	2	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	36	313	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
WT1	7490	MSKCC	GRCh37	11	32421514	32421514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	38	478	0	ENST00000332351.3:c.1078G>A	p.Gly360Ser	p.G360S	ENST00000332351	NM_024426.4	360	Ggt/Agt																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594882	47594883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs756343868		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	61	554	0	ENST00000395288.2:c.1156dup	p.Glu386GlyfsTer4	p.E386Gfs*4	ENST00000395288	NM_016506.5	386	gag/gGag																																																																															
POLE	5426	MSKCC	GRCh37	12	133218333	133218333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373272795		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	86	440	0	ENST00000320574.5:c.5278G>A	p.Val1760Met	p.V1760M	ENST00000320574	NM_006231.2	1760	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	44	310	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246557	46246557	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1161560614		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	49	493	0	ENST00000334344.6:c.4651G>A	p.Ala1551Thr	p.A1551T	ENST00000334344	NM_152641.2	1551	Gca/Aca																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864328	57864328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201538749		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	98	649	0	ENST00000228682.2:c.1805C>T	p.Ser602Leu	p.S602L	ENST00000228682	NM_005269.2	602	tCg/tTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28959145	28959145	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs745886558		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	115	459	0	ENST00000282397.4:c.1993C>T	p.Arg665Ter	p.R665*	ENST00000282397	NM_002019.4	665	Cga/Tga																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337684	73337684	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771690280		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	84	384	2	ENST00000377767.4:c.2032del	p.Ile678PhefsTer59	p.I678Ffs*59	ENST00000377767	NM_014953.3	678	Att/tt																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	35	520	1	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	33	530	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467824	99467824	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142608976		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	90	519	0	ENST00000268035.6:c.2693C>T	p.Pro898Leu	p.P898L	ENST00000268035	NM_000875.3	898	cCg/cTg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500430	99500430	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1412431600		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	36	527	0	ENST00000268035.6:c.3863C>T	p.Pro1288Leu	p.P1288L	ENST00000268035	NM_000875.3	1288	cCc/cTc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	81	533	2	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	78	488	5	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30293209	30293209	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	52	199	2	ENST00000322652.5:c.503del	p.Asn168MetfsTer22	p.N168Mfs*22	ENST00000322652	NM_015355.2	167	Aaa/aa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	83	665	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	91	509	0	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492937	56492937	+	start_lost	Translation_Start_Site	SNP	A	A	C			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	57	447	0	ENST00000407977.2:c.2T>G	p.Met1?	p.M1?	ENST00000407977		1	aTg/aGg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	31	571	0	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	38	564	1	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	53	465	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39647367	39647367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373107502		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	75	426	1	ENST00000262039.4:c.2539C>T	p.Arg847Cys	p.R847C	ENST00000262039	NM_002647.2	847	Cgc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220661	1220661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	54	522	0	ENST00000326873.7:c.679G>A	p.Gly227Ser	p.G227S	ENST00000326873	NM_000455.4	227	Ggc/Agc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15284907	15284907	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs551991530		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	41	500	0	ENST00000263388.2:c.4708C>T	p.Arg1570Cys	p.R1570C	ENST00000263388	NM_000435.2	1570	Cgt/Tgt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210869	36210869	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369788045		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	32	547	0	ENST00000222270.7:c.620G>A	p.Arg207Gln	p.R207Q	ENST00000222270	NM_014727.1	207	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	95	678	3	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
CD79A	973	MSKCC	GRCh37	19	42383128	42383128	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs557160710		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	31	457	0	ENST00000221972.3:c.148G>A	p.Ala50Thr	p.A50T	ENST00000221972	NM_021601.3	50	Gcc/Acc																																																																															
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	35	545	0	ENST00000575354.2:c.3743del	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423229	47423229	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	48	509	0	ENST00000404338.3:c.1297C>T	p.Arg433Ter	p.R433*	ENST00000404338	NM_004491.4	433	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	23	447	1	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719755	190719755	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750449314		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	35	418	0	ENST00000441310.2:c.1757G>A	p.Arg586His	p.R586H	ENST00000441310	NM_000534.4	586	cGt/cAt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660067	227660067	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145977916		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	64	547	0	ENST00000305123.5:c.3388G>A	p.Gly1130Ser	p.G1130S	ENST00000305123	NM_005544.2	1130	Ggt/Agt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965359	25965359	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377609636		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	31	531	1	ENST00000435504.4:c.3847C>T	p.Arg1283Cys	p.R1283C	ENST00000435504		1283	Cgt/Tgt																																																																															
ALK	238	MSKCC	GRCh37	2	29456453	29456453	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	40	584	0	ENST00000389048.3:c.2465del	p.Gly822ValfsTer9	p.G822Vfs*9	ENST00000389048	NM_004304.4	822	gGt/gt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025850	48025850	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370157832		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	94	499	1	ENST00000234420.5:c.728G>A	p.Arg243His	p.R243H	ENST00000234420	NM_000179.2	243	cGc/cAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	81	544	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384651	31384651	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	32	540	0	ENST00000328111.2:c.1359del	p.Leu454SerfsTer136	p.L454Sfs*136	ENST00000328111	NM_006892.3	451	gaG/ga																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29444383	29444383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	76	398	0	ENST00000544604.2:c.919C>T	p.Arg307Trp	p.R307W	ENST00000544604	NM_001206998.1	307	Cgg/Tgg																																																																															
EP300	2033	MSKCC	GRCh37	22	41513701	41513701	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773342339		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	76	544	0	ENST00000263253.7:c.605G>A	p.Arg202Gln	p.R202Q	ENST00000263253	NM_001429.3	202	cGa/cAa																																																																															
EP300	2033	MSKCC	GRCh37	22	41553320	41553320	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754143540		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	69	437	0	ENST00000263253.7:c.3409C>T	p.Arg1137Trp	p.R1137W	ENST00000263253	NM_001429.3	1137	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	30	345	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	12	272	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430938	181430938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	36	558	0	ENST00000325404.1:c.790C>T	p.Pro264Ser	p.P264S	ENST00000325404	NM_003106.3	264	Ccc/Tcc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715721	30715721	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893816		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	40	413	0	ENST00000359013.4:c.1454G>A	p.Arg485His	p.R485H	ENST00000359013	NM_001024847.2	485	cGc/cAc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37035147	37035147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs63751012		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	78	365	0	ENST00000231790.2:c.109G>T	p.Glu37Ter	p.E37*	ENST00000231790	NM_000249.3	37	Gag/Tag																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437627	52437627	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747938225		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	50	571	0	ENST00000460680.1:c.1534C>T	p.Arg512Cys	p.R512C	ENST00000460680	NM_004656.3	512	Cgc/Tgc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	36	597	3	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31508780	31508780	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	44	390	0	ENST00000344624.3:c.1535del	p.Lys512ArgfsTer19	p.K512Rfs*19	ENST00000344624		512	aAg/ag																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589576	67589576	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1289537429		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	18	337	0	ENST00000274335.5:c.1344del	p.Lys448AsnfsTer32	p.K448Nfs*32	ENST00000274335		447	Aaa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672366	86672366	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	26	410	0	ENST00000274376.6:c.2168A>G	p.Tyr723Cys	p.Y723C	ENST00000274376	NM_002890.2	723	tAc/tGc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001358	150001358	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	56	497	0	ENST00000253339.5:c.2246A>G	p.His749Arg	p.H749R	ENST00000253339		749	cAt/cGt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508226	106508226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	87	593	0	ENST00000359195.3:c.220G>A	p.Val74Met	p.V74M	ENST00000359195	NM_002649.2	74	Gtg/Atg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945667	151945668	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	16	346	0	ENST00000262189.6:c.1851dup	p.Gln618ThrfsTer4	p.Q618Tfs*4	ENST00000262189	NM_170606.2	617	-/A																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249022	55249022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs567477136		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	75	537	0	ENST00000275493.2:c.2320G>A	p.Val774Met	p.V774M	ENST00000275493	NM_005228.3	774	Gtg/Atg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146109	38146109	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1159628992		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	86	522	1	ENST00000317025.8:c.3397C>T	p.Arg1133Cys	p.R1133C	ENST00000317025	NM_023034.1	1133	Cgt/Tgt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	55	492	4	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933692	39933692	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1284842198		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	87	269	0	ENST00000378444.4:c.907G>A	p.Ala303Thr	p.A303T	ENST00000378444	NM_001123385.1	303	Gcc/Acc																																																																															
AR	367	MSKCC	GRCh37	X	66941758	66941758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	12	204	0	ENST00000374690.3:c.2407del	p.Gln803ArgfsTer6	p.Q803Rfs*6	ENST00000374690	NM_000044.3	801	aCc/ac																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458344	120458344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	97	656	1	ENST00000256646.2:c.7001G>A	p.Gly2334Asp	p.G2334D	ENST00000256646	NM_024408.3	2334	gGc/gAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16237694	16237694	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	25	450	0	ENST00000375759.3:c.1141G>T	p.Val381Leu	p.V381L	ENST00000375759	NM_015001.2	381	Gta/Tta																																																																															
FH	2271	MSKCC	GRCh37	1	241661128	241661128	+	stop_lost	Nonstop_Mutation	SNP	T	T	G			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	25	378	0	ENST00000366560.3:c.1533A>C	p.Ter511CysextTer3	p.*511Cext*3	ENST00000366560	NM_000143.3	511	tgA/tgC																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39322646	39322646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	52	500	0	ENST00000373001.3:c.346G>A	p.Asp116Asn	p.D116N	ENST00000373001	NM_022157.3	116	Gat/Aat																																																																															
JAK1	3716	MSKCC	GRCh37	1	65334997	65334997	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	40	364	0	ENST00000342505.4:c.644T>C	p.Ile215Thr	p.I215T	ENST00000342505	NM_002227.2	215	aTc/aCc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137190	64137190	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs946014920		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	28	473	0	ENST00000334205.4:c.1622A>G	p.Asp541Gly	p.D541G	ENST00000334205	NM_003942.2	541	gAc/gGc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28611409	28611409	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	30	359	0	ENST00000241453.7:c.1222A>G	p.Asn408Asp	p.N408D	ENST00000241453	NM_004119.2	408	Aat/Gat																																																																															
DICER1	23405	MSKCC	GRCh37	14	95572400	95572400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	28	421	0	ENST00000343455.3:c.2965G>A	p.Asp989Asn	p.D989N	ENST00000343455	NM_177438.2	989	Gat/Aat																																																																															
CD276	80381	MSKCC	GRCh37	15	73996005	73996005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	40	492	1	ENST00000318443.5:c.739G>A	p.Val247Met	p.V247M	ENST00000318443	NM_001024736.1	247	Gtg/Atg																																																																															
CD276	80381	MSKCC	GRCh37	15	74000695	74000695	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	27	547	0	ENST00000318443.5:c.1385T>C	p.Phe462Ser	p.F462S	ENST00000318443	NM_001024736.1	462	tTc/tCc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3831308	3831308	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	48	338	0	ENST00000262367.5:c.1574-1G>T		p.X525_splice	ENST00000262367	NM_004380.2	525																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72991361	72991361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	27	514	0	ENST00000268489.5:c.2684C>A	p.Pro895His	p.P895H	ENST00000268489	NM_006885.3	895	cCc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993935	72993935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	54	607	0	ENST00000268489.5:c.110G>A	p.Ser37Asn	p.S37N	ENST00000268489	NM_006885.3	37	aGt/aAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29556463	29556463	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	51	441	0	ENST00000358273.4:c.2835del	p.Phe945LeufsTer9	p.F945Lfs*9	ENST00000358273	NM_001042492.2	944	Ttt/tt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602695	10602695	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	32	609	0	ENST00000171111.5:c.883T>C	p.Ser295Pro	p.S295P	ENST00000171111	NM_203500.1	295	Tcc/Ccc																																																																															
GNA11	2767	MSKCC	GRCh37	19	3119237	3119237	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	46	548	0	ENST00000078429.4:c.769A>G	p.Thr257Ala	p.T257A	ENST00000078429	NM_002067.2	257	Acc/Gcc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45860918	45860918	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	51	593	0	ENST00000391945.4:c.1277del	p.Pro426ArgfsTer58	p.P426Rfs*58	ENST00000391945	NM_000400.3	426	cCg/cg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244133	5244133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	35	594	0	ENST00000357368.4:c.1349C>T	p.Pro450Leu	p.P450L	ENST00000357368	NM_002850.3	450	cCg/cTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202141692	202141692	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	23	475	0	ENST00000358485.4:c.979+1G>A		p.X327_splice	ENST00000358485	NM_001080125.1	327																																																																																
ALK	238	MSKCC	GRCh37	2	29456534	29456534	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	32	487	0	ENST00000389048.3:c.2384T>C	p.Ile795Thr	p.I795T	ENST00000389048	NM_004304.4	795	aTt/aCt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61715776	61715776	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	35	480	0	ENST00000401558.2:c.2153T>G	p.Leu718Arg	p.L718R	ENST00000401558	NM_003400.3	718	cTt/cGt																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62305417	62305417	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs748022323		P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	113	561	0	ENST00000482936.1:c.890C>T	p.Pro297Leu	p.P297L	ENST00000482936		297	cCg/cTg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29444440	29444440	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	50	456	0	ENST00000544604.2:c.976C>T	p.Gln326Ter	p.Q326*	ENST00000544604	NM_001206998.1	326	Cag/Tag																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185200201	185200201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	83	420	0	ENST00000265026.3:c.2858C>T	p.Ala953Val	p.A953V	ENST00000265026	NM_004721.4	953	gCc/gTc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713826	30713826	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	47	590	1	ENST00000359013.4:c.1226A>C	p.Asn409Thr	p.N409T	ENST00000359013	NM_001024847.2	409	aAt/aCt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933639	49933639	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	41	538	0	ENST00000296474.3:c.2638A>G	p.Ile880Val	p.I880V	ENST00000296474	NM_002447.2	880	Att/Gtt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934165	49934165	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	34	528	0	ENST00000296474.3:c.2342A>G	p.Tyr781Cys	p.Y781C	ENST00000296474	NM_002447.2	781	tAc/tGc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026138	71026138	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	20	350	0	ENST00000318789.4:c.1484T>C	p.Phe495Ser	p.F495S	ENST00000318789	NM_032682.5	495	tTc/tCc																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427720	72427720	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	87	464	0	ENST00000477973.2:c.768T>C	p.Val257Ala	p.V257A	ENST00000477973	NM_012234.5	257	gTc/gCc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187519188	187519189	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	33	424	0	ENST00000441802.2:c.12194dup	p.Thr4066HisfsTer14	p.T4066Hfs*14	ENST00000441802	NM_005245.3	4065	ggc/ggGc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129852	55129852	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	27	491	0	ENST00000257290.5:c.386T>C	p.Val129Ala	p.V129A	ENST00000257290	NM_006206.4	129	gTa/gCa																																																																															
KDR	3791	MSKCC	GRCh37	4	55946187	55946187	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	27	509	0	ENST00000263923.4:c.3992A>G	p.Glu1331Gly	p.E1331G	ENST00000263923	NM_002253.2	1331	gAg/gGg																																																																															
ALB	213	MSKCC	GRCh37	4	74283382	74283382	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	26	336	0	ENST00000295897.4:c.1424A>G	p.Asp475Gly	p.D475G	ENST00000295897	NM_000477.5	475	gAc/gGc																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519701	137519701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	37	483	0	ENST00000367739.4:c.937C>T	p.Pro313Ser	p.P313S	ENST00000367739	NM_000416.2	313	Cca/Tca																																																																															
ABL1	25	MSKCC	GRCh37	9	133760232	133760232	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	20	473	0	ENST00000318560.5:c.2559del	p.Thr854ProfsTer22	p.T854Pfs*22	ENST00000318560	NM_005157.4	852	aCc/ac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391121	139391121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	49	555	0	ENST00000277541.6:c.7070G>A	p.Ser2357Asn	p.S2357N	ENST00000277541	NM_017617.3	2357	aGc/aAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391171	139391171	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	33	650	0	ENST00000277541.6:c.7020del	p.Ser2341ProfsTer7	p.S2341Pfs*7	ENST00000277541	NM_017617.3	2340	ccC/cc																																																																															
MED12	9968	MSKCC	GRCh37	X	70347952	70347952	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	64	245	0	ENST00000374080.3:c.3191G>T	p.Gly1064Val	p.G1064V	ENST00000374080		1064	gGg/gTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0085950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	59	306	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0085954-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			686	121	385	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911535	101911535	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113605875		P-0085954-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			537	12	269	1	ENST00000374994.4:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000374994	NM_004612.2	487	cGg/cAg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2116002	2116002	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs281875238		P-0085954-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			512	116	456	0	ENST00000349721.2:c.3637C>T	p.Arg1213Trp	p.R1213W	ENST00000349721	NM_003070.3	1213	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACC			P-0085954-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1079	348	508	0	ENST00000275493.2:c.2309_2314dup	p.Asn771_Pro772insHisAsn	p.N771_P772insHN	ENST00000275493	NM_005228.3	770	gac/gACAACCac																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138124	64138124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085954-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1112	113	494	0	ENST00000334205.4:c.2047C>T	p.Pro683Ser	p.P683S	ENST00000334205	NM_003942.2	683	Ccc/Tcc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984707	11984707	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085954-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			231	71	152	0	ENST00000353533.5:c.253G>T	p.Gly85Ter	p.G85*	ENST00000353533	NM_003010.3	85	Gga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0085981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	22	250	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604827	48604828	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0085981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	28	319	0	ENST00000342988.3:c.1652dup	p.Leu551PhefsTer26	p.L551Ffs*26	ENST00000342988	NM_005359.5	550	cct/ccTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578395	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0085981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	37	354	2	ENST00000269305.4:c.535_536delinsAG	p.His179Ser	p.H179S	ENST00000269305	NM_001126112.2	179	CAt/AGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0085982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	58	381	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0085982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	274	552	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121909229		P-0085982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	55	321	0	ENST00000371953.3:c.389G>T	p.Arg130Leu	p.R130L	ENST00000371953	NM_000314.4	130	cGa/cTa																																																																															
BCL6	604	MSKCC	GRCh37	3	187442854	187442854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867576130		P-0085982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	12	426	0	ENST00000232014.4:c.1852C>T	p.Arg618Cys	p.R618C	ENST00000232014	NM_001130845.1	618	Cgt/Tgt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211880	36211880	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759918812		P-0085982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	109	450	0	ENST00000222270.7:c.1631G>A	p.Arg544Gln	p.R544Q	ENST00000222270	NM_014727.1	544	cGg/cAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711874	89711874	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0085982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	129	343	0	ENST00000371953.3:c.493-1G>T		p.X165_splice	ENST00000371953	NM_000314.4	165																																																																																
POT1	25913	MSKCC	GRCh37	7	124503404	124503404	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0085982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	149	275	0	ENST00000357628.3:c.546G>T	p.Lys182Asn	p.K182N	ENST00000357628	NM_015450.2	182	aaG/aaT																																																																															
NF1	4763	MSKCC	GRCh37	17	29654516	29654516	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0085982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	104	364	0	ENST00000358273.4:c.5269-1G>T		p.X1757_splice	ENST00000358273	NM_001042492.2	1757																																																																																
ATR	545	MSKCC	GRCh37	3	142281702	142281702	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	109	404	0	ENST00000350721.4:c.542A>T	p.Gln181Leu	p.Q181L	ENST00000350721	NM_001184.3	181	cAa/cTa																																																																															
NUF2	83540	MSKCC	GRCh37	1	163298084	163298084	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	38	344	0	ENST00000271452.3:c.265G>C	p.Val89Leu	p.V89L	ENST00000271452	NM_145697.2	89	Gtt/Ctt																																																																															
ACVR1	90	MSKCC	GRCh37	2	158637070	158637070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	28	417	0	ENST00000263640.3:c.110G>A	p.Cys37Tyr	p.C37Y	ENST00000263640	NM_001105.4	37	tGt/tAt																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38591737	38591737	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	119	319	0	ENST00000299084.4:c.196A>T	p.Arg66Trp	p.R66W	ENST00000299084	NM_152594.2	66	Agg/Tgg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47144914	47144914	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0085982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	25	343	0	ENST00000409792.3:c.4840-1G>A		p.X1614_splice	ENST00000409792	NM_014159.6	1614																																																																																
MSH3	4437	MSKCC	GRCh37	5	79960965	79960965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	88	371	0	ENST00000265081.6:c.362C>T	p.Pro121Leu	p.P121L	ENST00000265081	NM_002439.4	121	cCa/cTa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41247901	41247902	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0085982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	109	328	0	ENST00000357654.3:c.631_632delinsTT	p.Gly211Leu	p.G211L	ENST00000357654	NM_007294.3	211	GGa/TTa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560944	9560945	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0085982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	68	439	1	ENST00000353224.5:c.837_838delinsAA	p.Pro280Thr	p.P280T	ENST00000353224	NM_177990.2	279	caGCcc/caAAcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0085997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	61	479	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68845585	68845585	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0085997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	71	329	0	ENST00000261769.5:c.833-2A>G		p.X278_splice	ENST00000261769	NM_004360.3	278																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27087417	27087417	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0085997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	78	486	0	ENST00000324856.7:c.1991C>G	p.Ser664Ter	p.S664*	ENST00000324856	NM_006015.4	664	tCa/tGa																																																																															
CBL	867	MSKCC	GRCh37	11	119170297	119170297	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	86	497	0	ENST00000264033.4:c.2527G>C	p.Gly843Arg	p.G843R	ENST00000264033	NM_005188.3	843	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0085998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	74	550	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32968840	32968840	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80359194		P-0085998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	39	481	0	ENST00000380152.3:c.9271G>A	p.Val3091Ile	p.V3091I	ENST00000380152		3091	Gtc/Atc																																																																															
MYC	4609	MSKCC	GRCh37	8	128751173	128751173	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			838	48	492	0	ENST00000377970.2:c.710C>G	p.Ser237Cys	p.S237C	ENST00000377970	NM_002467.4	237	tCt/tGt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106543533	106543533	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	41	398	0	ENST00000369096.4:c.335G>C	p.Arg112Pro	p.R112P	ENST00000369096	NM_001198.3	112	cGt/cCt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244286	41244286	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	89	431	0	ENST00000357654.3:c.3262del	p.Val1088PhefsTer21	p.V1088Ffs*21	ENST00000357654	NM_007294.3	1088	Gtt/tt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs786203436		P-0085999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	293	505	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023895	27023895	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0085999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	150	435	0	ENST00000324856.7:c.1001C>A	p.Ser334Ter	p.S334*	ENST00000324856	NM_006015.4	334	tCg/tAg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29099543	29099543	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	75	334	0	ENST00000328354.6:c.858C>G	p.Ile286Met	p.I286M	ENST00000328354	NM_007194.3	286	atC/atG																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326695	62326695	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs140411308		P-0085999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	128	513	0	ENST00000482936.1:c.3514G>A	p.Glu1172Lys	p.E1172K	ENST00000482936		1172	Gag/Aag																																																																															
GAB1	2549	MSKCC	GRCh37	4	144387332	144387385	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTTAGATCTCGACTTAGATTCTGGGAAATCCACACCACCACGTAAGGTGAGTG	ACTTAGATCTCGACTTAGATTCTGGGAAATCCACACCACCACGTAAGGTGAGTG	-			P-0085999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	35	434	0	ENST00000262994.4:c.1882_1926+9del		p.X628_splice	ENST00000262994	NM_002039.3	628																																																																																
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0086000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	21	593	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820966	3820966	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	42	298	0	ENST00000262367.5:c.2485C>G	p.Leu829Val	p.L829V	ENST00000262367	NM_004380.2	829	Ctt/Gtt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245476	41245476	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	20	361	0	ENST00000357654.3:c.2072G>C	p.Arg691Thr	p.R691T	ENST00000357654	NM_007294.3	691	aGa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7573996	7573996	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0086005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			66	200	297	0	ENST00000269305.4:c.1031T>A	p.Leu344Gln	p.L344Q	ENST00000269305	NM_001126112.2	344	cTg/cAg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599952	10599952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	138	422	0	ENST00000171111.5:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000171111	NM_203500.1	542	Gag/Aag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25462004	25462004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	104	376	0	ENST00000264709.3:c.2403G>A	p.Met801Ile	p.M801I	ENST00000264709	NM_175629.2	801	atG/atA																																																																															
NBN	4683	MSKCC	GRCh37	8	90947814	90947814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	17	187	0	ENST00000265433.3:c.2261G>A	p.Arg754Lys	p.R754K	ENST00000265433	NM_002485.4	754	aGa/aAa																																																																															
ATRX	546	MSKCC	GRCh37	X	76778777	76778777	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			69	51	349	0	ENST00000373344.5:c.6802G>A	p.Glu2268Lys	p.E2268K	ENST00000373344	NM_000489.3	2268	Gaa/Aaa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724556	162724556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	45	354	0	ENST00000367921.3:c.328C>T	p.His110Tyr	p.H110Y	ENST00000367921	NM_006182.2	110	Cat/Tat																																																																															
DICER1	23405	MSKCC	GRCh37	14	95572505	95572505	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	16	317	0	ENST00000343455.3:c.2860C>G	p.Leu954Val	p.L954V	ENST00000343455	NM_177438.2	954	Ctt/Gtt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	339472	339472	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	89	278	0	ENST00000262320.3:c.2430C>G	p.Phe810Leu	p.F810L	ENST00000262320	NM_003502.3	810	ttC/ttG																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15995284	15995284	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0086005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	78	352	0	ENST00000268712.3:c.2909C>G	p.Ser970Ter	p.S970*	ENST00000268712	NM_006311.3	970	tCa/tGa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41215930	41215930	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs80356858		P-0086005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	30	284	0	ENST00000357654.3:c.5113C>G	p.Leu1705Val	p.L1705V	ENST00000357654	NM_007294.3	1705	Cta/Gta																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422875	47422875	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	101	296	0	ENST00000404338.3:c.943C>G	p.Gln315Glu	p.Q315E	ENST00000404338	NM_004491.4	315	Cag/Gag																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46588156	46588156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	94	375	0	ENST00000263734.3:c.706G>T	p.Asp236Tyr	p.D236Y	ENST00000263734	NM_001430.4	236	Gac/Tac																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1905941	1905941	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0086005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	37	325	0	ENST00000382895.3:c.598-2A>T		p.X200_splice	ENST00000382895	NM_133330.2	200																																																																																
HIST1H1C	3006	MSKCC	GRCh37	6	26056611	26056611	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0086005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	45	343	0	ENST00000343677.2:c.46G>T	p.Glu16Ter	p.E16*	ENST00000343677	NM_005319.3	16	Gag/Tag																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117695839	117695839	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	178	333	0	ENST00000369458.3:c.598G>C	p.Glu200Gln	p.E200Q	ENST00000369458	NM_024626.3	200	Gag/Cag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424123	49424123	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0086064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	165	252	0	ENST00000301067.7:c.13939G>T	p.Glu4647Ter	p.E4647*	ENST00000301067	NM_003482.3	4647	Gag/Tag																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0086064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	260	349	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900486	3900486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	265	450	0	ENST00000262367.5:c.610G>T	p.Gly204Trp	p.G204W	ENST00000262367	NM_004380.2	204	Ggg/Tgg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825537	50825537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	156	270	0	ENST00000398568.2:c.2168G>T	p.Gly723Val	p.G723V	ENST00000398568	NM_001042412.1	723	gGc/gTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29486070	29486070	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs746824139		P-0086064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	162	275	0	ENST00000358273.4:c.247C>T	p.Gln83Ter	p.Q83*	ENST00000358273	NM_001042492.2	83	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	247	462	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675562	86675562	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0086064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	166	239	0	ENST00000274376.6:c.2498C>G	p.Ser833Ter	p.S833*	ENST00000274376	NM_002890.2	833	tCa/tGa																																																																															
AR	367	MSKCC	GRCh37	X	66766238	66766238	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1327366080		P-0086064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	188	154	0	ENST00000374690.3:c.1250C>T	p.Ala417Val	p.A417V	ENST00000374690	NM_000044.3	417	gCg/gTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16265879	16265879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	209	418	0	ENST00000375759.3:c.10952C>T	p.Ser3651Phe	p.S3651F	ENST00000375759	NM_015001.2	3651	tCc/tTc																																																																															
EED	8726	MSKCC	GRCh37	11	85977243	85977243	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	134	188	0	ENST00000263360.6:c.845C>G	p.Pro282Arg	p.P282R	ENST00000263360	NM_003797.3	282	cCa/cGa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18443868	18443868	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	189	306	0	ENST00000266497.5:c.841C>G	p.Gln281Glu	p.Q281E	ENST00000266497		281	Cag/Gag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244317	46244317	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			661	276	428	0	ENST00000334344.6:c.2411G>C	p.Arg804Thr	p.R804T	ENST00000334344	NM_152641.2	804	aGa/aCa																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134108	41134108	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	239	411	0	ENST00000379561.5:c.1520A>G	p.Tyr507Cys	p.Y507C	ENST00000379561	NM_002015.3	507	tAt/tGt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476328	88476328	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	188	341	0	ENST00000360948.2:c.1804A>G	p.Lys602Glu	p.K602E	ENST00000360948	NM_001012338.2	602	Aag/Gag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927462	178927462	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	318	258	0	ENST00000263967.3:c.1225G>T	p.Val409Phe	p.V409F	ENST00000263967	NM_006218.2	409	Gtt/Ttt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673559	30673559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			829	354	528	2	ENST00000376406.3:c.3401C>A	p.Ala1134Asp	p.A1134D	ENST00000376406	NM_014641.2	1134	gCc/gAc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5066740	5066740	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	130	288	0	ENST00000381652.3:c.1277G>C	p.Arg426Pro	p.R426P	ENST00000381652	NM_004972.3	426	cGa/cCa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602581	10602581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			762	196	430	0	ENST00000171111.5:c.997G>T	p.Gly333Cys	p.G333C	ENST00000171111	NM_203500.1	333	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934574		P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	110	325	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188818	32188818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			911	68	417	0	ENST00000375023.3:c.736G>A	p.Gly246Arg	p.G246R	ENST00000375023	NM_004557.3	246	Ggg/Agg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044967	47044967	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	103	205	0	ENST00000329236.7:c.2059C>T	p.Arg687Ter	p.R687*	ENST00000329236	NM_001204466.1	687	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105667	27105667	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			855	119	397	0	ENST00000324856.7:c.5278G>T	p.Glu1760Ter	p.E1760*	ENST00000324856	NM_006015.4	1760	Gag/Tag																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435882	149435882	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587777247		P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	42	315	0	ENST00000286301.3:c.2342C>T	p.Ala781Val	p.A781V	ENST00000286301	NM_005211.3	781	gCg/gTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680722	88680722	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	67	288	0	ENST00000360948.2:c.535del	p.Glu179ArgfsTer24	p.E179Rfs*24	ENST00000360948	NM_001012338.2	179	Gag/ag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46298716	46298716	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	110	189	0	ENST00000334344.6:c.5364-1G>A		p.X1788_splice	ENST00000334344	NM_152641.2	1788																																																																																
BRCA1	672	MSKCC	GRCh37	17	41256900	41256900	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	43	211	0	ENST00000357654.3:c.286G>C	p.Asp96His	p.D96H	ENST00000357654	NM_007294.3	96	Gac/Cac																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865041	57865041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			975	70	396	0	ENST00000228682.2:c.2518G>T	p.Gly840Trp	p.G840W	ENST00000228682	NM_005269.2	840	Ggg/Tgg																																																																															
TEK	7010	MSKCC	GRCh37	9	27220097	27220097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	43	298	0	ENST00000380036.4:c.3154C>T	p.Pro1052Ser	p.P1052S	ENST00000380036	NM_000459.3	1052	Ccc/Tcc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	55	327	0	ENST00000304494.5:c.151-2A>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
TNFAIP3	7128	MSKCC	GRCh37	6	138200123	138200123	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			864	65	368	0	ENST00000237289.4:c.1541G>T	p.Arg514Met	p.R514M	ENST00000237289	NM_001270507.1	514	aGg/aTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118347686	118347686	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	39	235	0	ENST00000534358.1:c.3323T>A	p.Met1108Lys	p.M1108K	ENST00000534358	NM_005933.3	1108	aTg/aAg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276900	15276900	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			750	159	294	0	ENST00000263388.2:c.5365G>T	p.Gly1789Cys	p.G1789C	ENST00000263388	NM_000435.2	1789	Ggc/Tgc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158627018	158627018	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			805	45	259	0	ENST00000263640.3:c.652A>T	p.Arg218Trp	p.R218W	ENST00000263640	NM_001105.4	218	Agg/Tgg																																																																															
POLE	5426	MSKCC	GRCh37	12	133240636	133240636	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			743	57	291	0	ENST00000320574.5:c.2660A>G	p.Lys887Arg	p.K887R	ENST00000320574	NM_006231.2	887	aAa/aGa																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125525207	125525207	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			725	39	266	0	ENST00000428830.2:c.1423G>T	p.Ala475Ser	p.A475S	ENST00000428830	NM_001114121.2	475	Gcc/Tcc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741380	17741380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	43	284	0	ENST00000250003.3:c.51C>A	p.Asp17Glu	p.D17E	ENST00000250003	NM_002478.4	17	gaC/gaA																																																																															
TERT	7015	MSKCC	GRCh37	5	1268650	1268650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			750	41	297	0	ENST00000310581.5:c.2567G>A	p.Gly856Glu	p.G856E	ENST00000310581	NM_198253.2	856	gGg/gAg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244700	46244700	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1101	66	380	0	ENST00000334344.6:c.2794C>A	p.Pro932Thr	p.P932T	ENST00000334344	NM_152641.2	932	Cca/Aca																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133837	41133837	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	122	338	0	ENST00000379561.5:c.1791G>T	p.Lys597Asn	p.K597N	ENST00000379561	NM_002015.3	597	aaG/aaT																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2161878	2161878	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			728	46	245	0	ENST00000349721.2:c.4174G>T	p.Asp1392Tyr	p.D1392Y	ENST00000349721	NM_003070.3	1392	Gat/Tat																																																																															
WT1	7490	MSKCC	GRCh37	11	32417844	32417844	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	48	278	0	ENST00000332351.3:c.1208T>C	p.Phe403Ser	p.F403S	ENST00000332351	NM_024426.4	403	tTt/tCt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625469	69625469	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	82	262	0	ENST00000334134.2:c.325-1G>T		p.X109_splice	ENST00000334134	NM_005247.2	109																																																																																
FAT1	2195	MSKCC	GRCh37	4	187534364	187534364	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			829	59	365	0	ENST00000441802.2:c.9362A>G	p.Asn3121Ser	p.N3121S	ENST00000441802	NM_005245.3	3121	aAc/aGc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343377	118343377	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			806	56	355	0	ENST00000534358.1:c.1503G>C	p.Glu501Asp	p.E501D	ENST00000534358	NM_005933.3	501	gaG/gaC																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500857	8500857	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	49	297	0	ENST00000356435.5:c.2025A>T	p.Glu675Asp	p.E675D	ENST00000356435		675	gaA/gaT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828821	72828821	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			905	54	360	0	ENST00000268489.5:c.7760A>G	p.Gln2587Arg	p.Q2587R	ENST00000268489	NM_006885.3	2587	cAg/cGg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161294	55161294	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	41	284	0	ENST00000257290.5:c.3125C>A	p.Ser1042Ter	p.S1042*	ENST00000257290	NM_006206.4	1042	tCg/tAg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225370839	225370839	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			661	44	214	0	ENST00000264414.4:c.1040A>G	p.Asp347Gly	p.D347G	ENST00000264414	NM_003590.4	347	gAt/gGt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61711192	61711192	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			727	44	289	0	ENST00000401558.2:c.2557C>G	p.Gln853Glu	p.Q853E	ENST00000401558	NM_003400.3	853	Cag/Gag																																																																															
RET	5979	MSKCC	GRCh37	10	43607663	43607663	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1237	148	532	0	ENST00000355710.3:c.1639G>C	p.Asp547His	p.D547H	ENST00000355710	NM_020975.4	547	Gat/Cat																																																																															
TEK	7010	MSKCC	GRCh37	9	27212766	27212766	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	49	322	0	ENST00000380036.4:c.2748G>T	p.Lys916Asn	p.K916N	ENST00000380036	NM_000459.3	916	aaG/aaT																																																																															
RECQL	5965	MSKCC	GRCh37	12	21643258	21643258	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			727	41	265	0	ENST00000421138.2:c.269A>T	p.Glu90Val	p.E90V	ENST00000421138		90	gAa/gTa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561072	9561072	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	100	347	0	ENST00000353224.5:c.710C>G	p.Ser237Cys	p.S237C	ENST00000353224	NM_177990.2	237	tCt/tGt																																																																															
SRC	6714	MSKCC	GRCh37	20	36031275	36031275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	62	301	0	ENST00000358208.4:c.1394C>T	p.Pro465Leu	p.P465L	ENST00000358208		465	cCc/cTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1293932	1293932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			839	128	389	2	ENST00000310581.5:c.1069G>A	p.Ala357Thr	p.A357T	ENST00000310581	NM_198253.2	357	Gct/Act																																																																															
ATR	545	MSKCC	GRCh37	3	142281312	142281312	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			951	68	337	0	ENST00000350721.4:c.932G>C	p.Arg311Thr	p.R311T	ENST00000350721	NM_001184.3	311	aGa/aCa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2164218	2164218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	60	169	0	ENST00000398665.3:c.35C>T	p.Pro12Leu	p.P12L	ENST00000398665	NM_032482.2	12	cCc/cTc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214689	5214689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			838	56	369	0	ENST00000357368.4:c.4377C>A	p.Asn1459Lys	p.N1459K	ENST00000357368	NM_002850.3	1459	aaC/aaA																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2220209	2220209	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	131	332	0	ENST00000398665.3:c.2794C>A	p.Leu932Met	p.L932M	ENST00000398665	NM_032482.2	932	Ctg/Atg																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61308113	61308113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	17	111	0	ENST00000341074.5:c.464C>A	p.Thr155Lys	p.T155K	ENST00000341074	NM_002974.2	155	aCg/aAg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138198374	138198374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			761	88	270	0	ENST00000237289.4:c.967C>T	p.His323Tyr	p.H323Y	ENST00000237289	NM_001270507.1	323	Cat/Tat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971183	21971185	+	frameshift_variant	Frame_Shift_Del	DEL	CTC	CTC	AT			P-0086068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	53	365	1	ENST00000304494.5:c.173_175delinsAT	p.Arg58HisfsTer88	p.R58Hfs*88	ENST00000304494	NM_000077.4	58	cGAGtg/cATtg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0086069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	157	314	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241678	55241678	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs397517085		P-0086069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	180	359	0	ENST00000275493.2:c.2126A>C	p.Glu709Ala	p.E709A	ENST00000275493	NM_005228.3	709	gAa/gCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28929495		P-0086069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	141	298	0	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643800	38643800	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	128	355	1	ENST00000299084.4:c.1270A>G	p.Arg424Gly	p.R424G	ENST00000299084	NM_152594.2	424	Aga/Gga																																																																															
MED12	9968	MSKCC	GRCh37	X	70361122	70361122	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0086069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			884	211	518	0	ENST00000374080.3:c.6310C>T	p.Gln2104Ter	p.Q2104*	ENST00000374080		2104	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0086116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	120	409	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0086116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	179	328	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576982	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCCT	CTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCCT	-			P-0086116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	176	528	0	ENST00000269305.4:c.919+37_920-1del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48603035	48603035	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0086116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	99	296	0	ENST00000342988.3:c.1336C>T	p.Gln446Ter	p.Q446*	ENST00000342988	NM_005359.5	446	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112179093	112179093	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			821	88	340	0	ENST00000257430.4:c.7802G>C	p.Ser2601Thr	p.S2601T	ENST00000257430	NM_000038.5	2601	aGt/aCt																																																																															
FYN	2534	MSKCC	GRCh37	6	112041163	112041163	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			902	96	485	0	ENST00000368678.4:c.92G>T	p.Gly31Val	p.G31V	ENST00000368678		31	gGc/gTc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913587	39913587	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0086116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	82	292	0	ENST00000378444.4:c.4742-1G>C		p.X1581_splice	ENST00000378444	NM_001123385.1	1581																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0086117-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	74	224	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391057	139391057	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086117-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			930	135	602	0	ENST00000277541.6:c.7134C>G	p.His2378Gln	p.H2378Q	ENST00000277541	NM_017617.3	2378	caC/caG																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041702	47041703	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0086117-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	133	480	0	ENST00000329236.7:c.1695_1696del	p.His565GlnfsTer29	p.H565Qfs*29	ENST00000329236	NM_001204466.1	565	CAc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	561	508	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911254	29911254	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs41541015		P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			841	95	248	0	ENST00000376809.5:c.553G>C	p.Asp185His	p.D185H	ENST00000376809	NM_002116.7	185	Gat/Cat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584497	48584497	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	163	327	0	ENST00000342988.3:c.670C>T	p.Gln224Ter	p.Q224*	ENST00000342988	NM_005359.5	224	Cag/Tag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861936	57861936	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1285	417	487	0	ENST00000228682.2:c.1237G>T	p.Glu413Ter	p.E413*	ENST00000228682	NM_005269.2	413	Gag/Tag																																																																															
BTK	695	MSKCC	GRCh37	X	100608277	100608277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	153	409	0	ENST00000308731.7:c.1813G>A	p.Glu605Lys	p.E605K	ENST00000308731	NM_000061.2	605	Gag/Aag																																																																															
MET	4233	MSKCC	GRCh37	7	116339926	116339926	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764052874		P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	77	373	0	ENST00000397752.3:c.788C>T	p.Thr263Met	p.T263M	ENST00000397752	NM_000245.2	263	aCg/aTg																																																																															
CD79B	974	MSKCC	GRCh37	17	62007526	62007526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147236129		P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1096	155	473	0	ENST00000392795.3:c.341G>A	p.Arg114Gln	p.R114Q	ENST00000392795	NM_001039933.1	114	cGg/cAg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41234460	41234460	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	57	347	0	ENST00000357654.3:c.4318G>C	p.Glu1440Gln	p.E1440Q	ENST00000357654	NM_007294.3	1440	Gag/Cag																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194601	29194601	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1489348650		P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1101	116	458	0	ENST00000240100.2:c.1127C>T	p.Ser376Leu	p.S376L	ENST00000240100	NM_001394.6	376	tCg/tTg																																																																															
PARP1	142	MSKCC	GRCh37	1	226578119	226578119	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1097	151	398	0	ENST00000366794.5:c.609G>C	p.Lys203Asn	p.K203N	ENST00000366794	NM_001618.3	203	aaG/aaC																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262538	16262538	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375130938		P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			851	68	433	1	ENST00000375759.3:c.9803G>A	p.Arg3268His	p.R3268H	ENST00000375759	NM_015001.2	3268	cGt/cAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37873690	37873690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1181	93	455	0	ENST00000269571.5:c.1855G>A	p.Glu619Lys	p.E619K	ENST00000269571		619	Gag/Aag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176665268	176665268	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	87	364	0	ENST00000439151.2:c.3952C>G	p.Leu1318Val	p.L1318V	ENST00000439151	NM_022455.4	1318	Cta/Gta																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645084	67645084	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	574	446	0	ENST00000264010.4:c.349C>T	p.Gln117Ter	p.Q117*	ENST00000264010	NM_006565.3	117	Caa/Taa																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082749	16082749	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	22	145	0	ENST00000281043.3:c.563A>C	p.Asp188Ala	p.D188A	ENST00000281043	NM_005378.4	188	gAt/gCt																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502252	186502252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			934	81	338	0	ENST00000323963.5:c.61G>A	p.Asp21Asn	p.D21N	ENST00000323963		21	Gat/Aat																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391279	139391279	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			968	163	567	0	ENST00000277541.6:c.6912G>C	p.Leu2304Phe	p.L2304F	ENST00000277541	NM_017617.3	2304	ttG/ttC																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99152300	99152300	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1247867306		P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	95	267	0	ENST00000074304.5:c.379C>T	p.Gln127Ter	p.Q127*	ENST00000074304	NM_001134224.1	127	Cag/Tag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230637	46230637	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	56	385	0	ENST00000334344.6:c.886C>G	p.Leu296Val	p.L296V	ENST00000334344	NM_152641.2	296	Ctt/Gtt																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29280037	29280037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1035	133	389	0	ENST00000544604.2:c.283G>A	p.Glu95Lys	p.E95K	ENST00000544604	NM_001206998.1	95	Gag/Aag																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38991089	38991089	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	17	269	0	ENST00000357387.3:c.545G>C	p.Arg182Thr	p.R182T	ENST00000357387	NM_152756.3	182	aGa/aCa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287315	46287315	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	73	343	0	ENST00000334344.6:c.5260C>G	p.Arg1754Gly	p.R1754G	ENST00000334344	NM_152641.2	1754	Cga/Gga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937531	32937531	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	56	400	0	ENST00000380152.3:c.8192A>T	p.Gln2731Leu	p.Q2731L	ENST00000380152		2731	cAg/cTg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17382437	17382437	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1004	87	298	0	ENST00000359435.4:c.317C>G	p.Ser106Ter	p.S106*	ENST00000359435	NM_001033549.1	106	tCa/tGa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760779	59760779	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	37	289	0	ENST00000259008.2:c.3628G>C	p.Asp1210His	p.D1210H	ENST00000259008	NM_032043.2	1210	Gat/Cat																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87563538	87563538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	411	310	0	ENST00000277120.3:c.1926C>A	p.Asn642Lys	p.N642K	ENST00000277120		642	aaC/aaA																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948241	71948241	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			932	586	490	0	ENST00000298229.2:c.2953G>T	p.Ala985Ser	p.A985S	ENST00000298229	NM_001567.3	985	Gcc/Tcc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914650	32914650	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	73	379	0	ENST00000380152.3:c.6158C>G	p.Ser2053Cys	p.S2053C	ENST00000380152		2053	tCt/tGt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230772	46230772	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	115	348	0	ENST00000334344.6:c.1021G>A	p.Glu341Lys	p.E341K	ENST00000334344	NM_152641.2	341	Gag/Aag																																																																															
TET1	80312	MSKCC	GRCh37	10	70406399	70406399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			964	99	401	0	ENST00000373644.4:c.3913C>T	p.Pro1305Ser	p.P1305S	ENST00000373644	NM_030625.2	1305	Cca/Tca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923703	72923703	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1350	117	393	0	ENST00000268489.5:c.3375G>C	p.Gln1125His	p.Q1125H	ENST00000268489	NM_006885.3	1125	caG/caC																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920459	134920459	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			798	425	423	0	ENST00000398015.3:c.2274C>G	p.Cys758Trp	p.C758W	ENST00000398015	NM_004441.4	758	tgC/tgG																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372347	55372347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1968	175	546	0	ENST00000297316.4:c.1037C>A	p.Thr346Lys	p.T346K	ENST00000297316	NM_022454.3	346	aCg/aAg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52713648	52713648	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	114	328	0	ENST00000394830.3:c.80C>G	p.Ser27Ter	p.S27*	ENST00000394830	NM_018313.4	27	tCa/tGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178941956	178941956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	66	232	0	ENST00000263967.3:c.2275C>T	p.His759Tyr	p.H759Y	ENST00000263967	NM_006218.2	759	Cat/Tat																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535297	66535297	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	440	425	0	ENST00000273854.3:c.164C>A	p.Ala55Asp	p.A55D	ENST00000273854	NM_004439.5	55	gCc/gAc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95574256	95574256	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	193	319	0	ENST00000343455.3:c.2611G>C	p.Asp871His	p.D871H	ENST00000343455	NM_177438.2	871	Gac/Cac																																																																															
SESN3	143686	MSKCC	GRCh37	11	94917722	94917722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	19	327	0	ENST00000536441.1:c.799G>A	p.Glu267Lys	p.E267K	ENST00000536441	NM_144665.3	267	Gaa/Aaa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533627	63533627	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1056	146	464	0	ENST00000307078.5:c.1527G>C	p.Gln509His	p.Q509H	ENST00000307078	NM_004655.3	509	caG/caC																																																																															
RIT1	6016	MSKCC	GRCh37	1	155870325	155870325	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1135	70	377	0	ENST00000368323.3:c.514G>C	p.Asp172His	p.D172H	ENST00000368323	NM_006912.5	172	Gat/Cat																																																																															
NF1	4763	MSKCC	GRCh37	17	29556195	29556195	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	28	157	0	ENST00000358273.4:c.2562G>C	p.Gln854His	p.Q854H	ENST00000358273	NM_001042492.2	854	caG/caC																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191439	185191439	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1020	119	435	0	ENST00000265026.3:c.2320G>C	p.Glu774Gln	p.E774Q	ENST00000265026	NM_004721.4	774	Gag/Cag																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753037	57753037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	63	411	0	ENST00000274289.3:c.979G>A	p.Asp327Asn	p.D327N	ENST00000274289	NM_006622.3	327	Gac/Aac																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628295	90628295	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1111	161	518	0	ENST00000330062.3:c.1116C>G	p.Ile372Met	p.I372M	ENST00000330062	NM_002168.2	372	atC/atG																																																																															
MPL	4352	MSKCC	GRCh37	1	43812475	43812475	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1088	171	496	0	ENST00000372470.3:c.1181del	p.Pro394GlnfsTer102	p.P394Qfs*102	ENST00000372470	NM_005373.2	393	aCc/ac																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40461076	40461076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	219	272	0	ENST00000345506.4:c.2074G>A	p.Asp692Asn	p.D692N	ENST00000345506	NM_003152.3	692	Gat/Aat																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63985207	63985207	+	3_prime_UTR_variant	3'UTR	SNP	C	C	G			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			742	97	350	0	ENST00000295900.6:c.*64C>G			ENST00000295900	NM_000333.3																																																																																	
APC	324	MSKCC	GRCh37	5	112177205	112177205	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	98	397	0	ENST00000257430.4:c.5914C>G	p.Leu1972Val	p.L1972V	ENST00000257430	NM_000038.5	1972	Ctc/Gtc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391100	89391100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	430	382	0	ENST00000336596.2:c.1166T>C	p.Leu389Pro	p.L389P	ENST00000336596	NM_005233.5	389	cTc/cCc																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51507277	51507277	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	55	260	0	ENST00000260433.2:c.1011G>C	p.Gln337His	p.Q337H	ENST00000260433		337	caG/caC																																																																															
RET	5979	MSKCC	GRCh37	10	43619223	43619223	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1373	200	509	0	ENST00000355710.3:c.2906G>T	p.Arg969Leu	p.R969L	ENST00000355710	NM_020975.4	969	cGg/cTg																																																																															
RIT1	6016	MSKCC	GRCh37	1	155870180	155870180	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	48	280	0	ENST00000368323.3:c.659G>C	p.Ter220SerextTer24	p.*220Sext*24	ENST00000368323	NM_006912.5	220	tGa/tCa																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446414	29446414	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	642	470	0	ENST00000544604.2:c.2245G>T	p.Glu749Ter	p.E749*	ENST00000544604	NM_001206998.1	749	Gag/Tag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302646	15302646	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	382	551	0	ENST00000263388.2:c.712G>T	p.Asp238Tyr	p.D238Y	ENST00000263388	NM_000435.2	238	Gac/Tac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467498	66467498	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			994	105	412	0	ENST00000273854.3:c.771A>T	p.Glu257Asp	p.E257D	ENST00000273854	NM_004439.5	257	gaA/gaT																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502834	186502834	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			782	105	323	0	ENST00000323963.5:c.292G>C	p.Glu98Gln	p.E98Q	ENST00000323963		98	Gag/Cag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645090	67645090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	571	449	0	ENST00000264010.4:c.355C>T	p.Pro119Ser	p.P119S	ENST00000264010	NM_006565.3	119	Cct/Tct																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	48	406	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213872	66213872	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772452750		P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	47	283	0	ENST00000273854.3:c.2558G>A	p.Arg853Gln	p.R853Q	ENST00000273854	NM_004439.5	853	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	83	368	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	39	299	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs879255270		P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			843	131	442	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532867	187532867	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762890230		P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	101	295	0	ENST00000441802.2:c.9526G>A	p.Glu3176Lys	p.E3176K	ENST00000441802	NM_005245.3	3176	Gaa/Aaa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	52	340	0	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023264	31023264	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			803	103	426	0	ENST00000375687.4:c.2749G>T	p.Glu917Ter	p.E917*	ENST00000375687	NM_015338.5	917	Gaa/Taa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274877	41274877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	106	344	0	ENST00000349496.5:c.1127G>A	p.Arg376His	p.R376H	ENST00000349496	NM_001904.3	376	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	53	338	0	ENST00000263967.3:c.3132T>G	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaG																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231773	36231773	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1058	34	477	0	ENST00000300305.3:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000300305		204	cGa/cAa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843480	3843480	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756844215		P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			769	129	364	0	ENST00000262367.5:c.1123G>A	p.Gly375Arg	p.G375R	ENST00000262367	NM_004380.2	375	Gga/Aga																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223725	53223725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	22	228	0	ENST00000375401.3:c.3634C>T	p.Arg1212Trp	p.R1212W	ENST00000375401	NM_004187.3	1212	Cgg/Tgg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134681	41134681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			746	113	384	0	ENST00000379561.5:c.947G>A	p.Arg316Gln	p.R316Q	ENST00000379561	NM_002015.3	316	cGa/cAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251901	153251901	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	48	292	0	ENST00000281708.4:c.1105G>T	p.Glu369Ter	p.E369*	ENST00000281708	NM_033632.3	369	Gaa/Taa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295755	212295755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	35	299	0	ENST00000342788.4:c.2558C>T	p.Ser853Phe	p.S853F	ENST00000342788	NM_005235.2	853	tCt/tTt																																																																															
POLE	5426	MSKCC	GRCh37	12	133252328	133252328	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	209	356	0	ENST00000320574.5:c.1099T>G	p.Phe367Val	p.F367V	ENST00000320574	NM_006231.2	367	Ttt/Gtt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927439	178927439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	41	259	0	ENST00000263967.3:c.1202G>A	p.Arg401Gln	p.R401Q	ENST00000263967	NM_006218.2	401	cGa/cAa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135804190	135804190	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs984306144		P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	130	418	0	ENST00000298552.3:c.70G>A	p.Asp24Asn	p.D24N	ENST00000298552	NM_001162426.1	24	Gac/Aac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467884	66467884	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	73	342	0	ENST00000273854.3:c.385G>T	p.Glu129Ter	p.E129*	ENST00000273854	NM_004439.5	129	Gaa/Taa																																																																															
ETV6	2120	MSKCC	GRCh37	12	11992217	11992217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			780	110	314	1	ENST00000396373.4:c.307C>T	p.Arg103Cys	p.R103C	ENST00000396373	NM_001987.4	103	Cgc/Tgc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68972915	68972915	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs201372935		P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	35	242	0	ENST00000288368.4:c.1240G>A	p.Glu414Lys	p.E414K	ENST00000288368	NM_024870.2	414	Gaa/Aaa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375002	45375002	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	58	327	0	ENST00000262160.6:c.841G>T	p.Glu281Ter	p.E281*	ENST00000262160	NM_005901.5	281	Gaa/Taa																																																																															
MSI2	124540	MSKCC	GRCh37	17	55339540	55339540	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1439557709		P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	73	274	0	ENST00000284073.2:c.299G>A	p.Arg100Gln	p.R100Q	ENST00000284073	NM_138962.2	100	cGa/cAa																																																																															
TERT	7015	MSKCC	GRCh37	5	1293847	1293847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			785	142	554	0	ENST00000310581.5:c.1154G>A	p.Arg385His	p.R385H	ENST00000310581	NM_198253.2	385	cGc/cAc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37089156	37089156	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs63751214		P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	80	286	0	ENST00000231790.2:c.1878C>A	p.Phe626Leu	p.F626L	ENST00000231790	NM_000249.3	626	ttC/ttA																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58711239	58711239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	83	220	0	ENST00000305921.3:c.727C>T	p.Arg243Cys	p.R243C	ENST00000305921	NM_003620.3	243	Cgt/Tgt																																																																															
CDK8	1024	MSKCC	GRCh37	13	26967513	26967513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	45	193	0	ENST00000381527.3:c.656C>T	p.Ala219Val	p.A219V	ENST00000381527	NM_001260.1	219	gCt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	64	232	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350618	89350618	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1433758363		P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	98	339	0	ENST00000301030.4:c.2332A>G	p.Lys778Glu	p.K778E	ENST00000301030	NM_001256183.1	778	Aag/Gag																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969968	161969968	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746215864		P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	90	290	0	ENST00000366898.1:c.1001G>A	p.Arg334His	p.R334H	ENST00000366898	NM_004562.2	334	cGc/cAc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125497646	125497646	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	45	305	0	ENST00000428830.2:c.210C>A	p.Phe70Leu	p.F70L	ENST00000428830	NM_001114121.2	70	ttC/ttA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467853	66467853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	70	346	0	ENST00000273854.3:c.416G>A	p.Ser139Asn	p.S139N	ENST00000273854	NM_004439.5	139	aGc/aAc																																																																															
ATM	472	MSKCC	GRCh37	11	108173757	108173757	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	34	285	0	ENST00000278616.4:c.5496+1G>T		p.X1832_splice	ENST00000278616	NM_000051.3	1832																																																																																
CDK8	1024	MSKCC	GRCh37	13	26957006	26957006	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	32	202	0	ENST00000381527.3:c.512T>G	p.Ile171Ser	p.I171S	ENST00000381527	NM_001260.1	171	aTt/aGt																																																																															
TET1	80312	MSKCC	GRCh37	10	70404827	70404827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	49	348	0	ENST00000373644.4:c.2341G>A	p.Glu781Lys	p.E781K	ENST00000373644	NM_030625.2	781	Gaa/Aaa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43707984	43707984	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	104	382	0	ENST00000382044.4:c.4897A>G	p.Lys1633Glu	p.K1633E	ENST00000382044	NM_001141980.1	1633	Aaa/Gaa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498516	89498516	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	18	272	0	ENST00000336596.2:c.2488A>G	p.Asn830Asp	p.N830D	ENST00000336596	NM_005233.5	830	Aat/Gat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581180	48581180	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	87	331	0	ENST00000342988.3:c.484T>C	p.Tyr162His	p.Y162H	ENST00000342988	NM_005359.5	162	Tat/Cat																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14024614	14024614	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	24	261	0	ENST00000311895.7:c.840G>T	p.Lys280Asn	p.K280N	ENST00000311895	NM_005236.2	280	aaG/aaT																																																																															
NF1	4763	MSKCC	GRCh37	17	29553665	29553665	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	119	355	0	ENST00000358273.4:c.2214C>A	p.Phe738Leu	p.F738L	ENST00000358273	NM_001042492.2	738	ttC/ttA																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914127	32914127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	23	345	0	ENST00000380152.3:c.5635G>A	p.Glu1879Lys	p.E1879K	ENST00000380152		1879	Gag/Aag																																																																															
JAK3	3718	MSKCC	GRCh37	19	17950373	17950373	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			763	41	394	0	ENST00000458235.1:c.1354G>T	p.Glu452Ter	p.E452*	ENST00000458235	NM_000215.3	452	Gag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332556	153332556	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	117	394	0	ENST00000281708.4:c.400G>T	p.Glu134Ter	p.E134*	ENST00000281708	NM_033632.3	134	Gaa/Taa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608231	28608231	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	102	390	0	ENST00000241453.7:c.1825A>C	p.Asn609His	p.N609H	ENST00000241453	NM_004119.2	609	Aat/Cat																																																																															
SMO	6608	MSKCC	GRCh37	7	128850862	128850862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	90	378	0	ENST00000249373.3:c.1709C>T	p.Ala570Val	p.A570V	ENST00000249373	NM_005631.4	570	gCc/gTc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637979	176637979	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	78	326	0	ENST00000439151.2:c.2579T>C	p.Val860Ala	p.V860A	ENST00000439151	NM_022455.4	860	gTt/gCt																																																																															
NF1	4763	MSKCC	GRCh37	17	29509597	29509597	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	63	323	0	ENST00000358273.4:c.802C>A	p.Pro268Thr	p.P268T	ENST00000358273	NM_001042492.2	268	Cca/Aca																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94203640	94203640	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	34	219	0	ENST00000323929.3:c.1014G>T	p.Glu338Asp	p.E338D	ENST00000323929	NM_005591.3	338	gaG/gaT																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112760181	112760181	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	42	242	0	ENST00000369452.4:c.850T>C	p.Ser284Pro	p.S284P	ENST00000369452	NM_007373.3	284	Tcc/Ccc																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33680970	33680970	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146126445		P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	87	353	0	ENST00000308377.4:c.1307G>A	p.Arg436Gln	p.R436Q	ENST00000308377	NM_152270.3	436	cGg/cAg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067429	37067429	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			737	129	414	0	ENST00000231790.2:c.1340T>C	p.Leu447Ser	p.L447S	ENST00000231790	NM_000249.3	447	tTg/tCg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95578513	95578513	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	36	252	0	ENST00000343455.3:c.2112A>C	p.Lys704Asn	p.K704N	ENST00000343455	NM_177438.2	704	aaA/aaC																																																																															
RB1	5925	MSKCC	GRCh37	13	48937051	48937051	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	58	217	0	ENST00000267163.4:c.819T>G	p.Ile273Met	p.I273M	ENST00000267163	NM_000321.2	273	atT/atG																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18658243	18658243	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	41	304	0	ENST00000266497.5:c.3048C>A	p.Phe1016Leu	p.F1016L	ENST00000266497		1016	ttC/ttA																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026213	48026213	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0086124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			766	77	425	0	ENST00000234420.5:c.1091T>A	p.Val364Asp	p.V364D	ENST00000234420	NM_000179.2	364	gTt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1131691025		P-0086125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	236	366	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123243237	123243237	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55774317		P-0086125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1390	75	471	0	ENST00000358487.5:c.2276G>A	p.Arg759Gln	p.R759Q	ENST00000358487	NM_000141.4	759	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175193	112175193	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			933	171	356	0	ENST00000257430.4:c.3904del	p.Leu1302CysfsTer3	p.L1302Cfs*3	ENST00000257430	NM_000038.5	1301	aCc/ac																																																																															
APC	324	MSKCC	GRCh37	5	112151223	112151223	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0086125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	120	235	0	ENST00000257430.4:c.867del	p.Ser290ValfsTer3	p.S290Vfs*3	ENST00000257430	NM_000038.5	289	gCc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876658483		P-0086126-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			924	351	435	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0086126-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	52	116	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962846	2962846	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0086126-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			851	185	279	0	ENST00000396946.4:c.2062C>T	p.Arg688Ter	p.R688*	ENST00000396946	NM_032415.4	688	Cga/Tga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16021253	16021263	+	frameshift_variant	Frame_Shift_Del	DEL	GTTAAAATAGA	GTTAAAATAGA	C			P-0086126-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	181	263	0	ENST00000268712.3:c.1994_2004delinsG	p.Phe665CysfsTer100	p.F665Cfs*100	ENST00000268712	NM_006311.3	665	tTCTATTTTAAC/tG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0086127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	616	516	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0086127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	193	230	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857311	9857311	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1245573153		P-0086127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	261	510	0	ENST00000330684.3:c.4090G>A	p.Asp1364Asn	p.D1364N	ENST00000330684	NM_001134407.1	1364	Gat/Aat																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15833898	15833898	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			27	15	15	0	ENST00000307771.7:c.656A>G	p.Tyr219Cys	p.Y219C	ENST00000307771	NM_005089.3	219	tAt/tGt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38186921	38186921	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0086127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	34	294	0	ENST00000317025.8:c.1556T>C	p.Ile519Thr	p.I519T	ENST00000317025	NM_023034.1	519	aTc/aCc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221465	1222487	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGGAGAGGCCGACCTCCCCGCAGGGCCTGGTTTGCCAGGTCCCTCAGCTCCACCCTGCTTCTGGGCCCTGTTCACCCTCCGAACTCCCACCCCAGAGGGCAGTGCTGCCCTGCGCCTCCCCCAGCCCCACCCTCGGGGGCTCCCTGGCTTGCAGGGTCTGTCAGGGTTGTCCTGCTGCACTTCCTACGCATGGCAGCAGGTGGCACTGGCCGTCCGTCCATCTGCCCAGTGGCCTTGGGAGAACGGAACCGCCCTGGCCGTCCAGCCCAGCCCTGTCTCCCTGCCAGCCGCGCACAGGCTGTCCCCGGCATGTCCCAGGAGTGGAGTGGCCTCTGTCAGGGAGACCGCCTGTGCGCGGGGTCCCCCTTAGGAGCGTCCAGGTATCACCCAGGGCCTGACAACAGAGGCTGGGCAGGCGGGGACGGTTGGTGGGGTCTCAGGCCTGTGCCCAGCTGACAGGCTCCTCGCCGGCTTCTCCTCAGGGATGCTTGAGTACGAACCGGCCAAGAGGTTCTCCATCCGGCAGATCCGGCAGCACAGGTGAGCGGCCCCTGGGGGCAGTGGGGCCGAGGCTGCAGGGAGGCCGGCCATGTGGGCAGCTGGTTGAGCGGGCGCTAGAGCAGGGCGTGGTGGGGGTGCCAGGCTGGGCTGGGGCCAGACCCCGTGCAGCGCCCGCAGTTCTCGGGGCCCGAGTGGGGTCTCTGGGCAGTGTCCTGTTACCGGCCAGACCCAGGCGCCTTGTCCGAACTGGGGTCTGAGTGAGGACATGCGTCCGTCCCTGCCCTAGGCATGGAGATGCGCCAGGAAGGGCACAGCTGGTCCCAAACACTGGCGAGAGCCTCTCTTTTTCCCCTCCTCCTGGGGCTCCCAGCAGCAGGGTGTGGCTGGGATCCAGCCCAGGGCCCCCAGCTCCATGACAGGGAAGACAGAGCAGCGGACGGGGTCAGCAGGCCCCACAGTGCCGCCTCCCTCACTTCGTGGGCTCTGCTCCTCTGCACCAGCCCCTGGAGGCCCTTGAGCCG	GTGGAGAGGCCGACCTCCCCGCAGGGCCTGGTTTGCCAGGTCCCTCAGCTCCACCCTGCTTCTGGGCCCTGTTCACCCTCCGAACTCCCACCCCAGAGGGCAGTGCTGCCCTGCGCCTCCCCCAGCCCCACCCTCGGGGGCTCCCTGGCTTGCAGGGTCTGTCAGGGTTGTCCTGCTGCACTTCCTACGCATGGCAGCAGGTGGCACTGGCCGTCCGTCCATCTGCCCAGTGGCCTTGGGAGAACGGAACCGCCCTGGCCGTCCAGCCCAGCCCTGTCTCCCTGCCAGCCGCGCACAGGCTGTCCCCGGCATGTCCCAGGAGTGGAGTGGCCTCTGTCAGGGAGACCGCCTGTGCGCGGGGTCCCCCTTAGGAGCGTCCAGGTATCACCCAGGGCCTGACAACAGAGGCTGGGCAGGCGGGGACGGTTGGTGGGGTCTCAGGCCTGTGCCCAGCTGACAGGCTCCTCGCCGGCTTCTCCTCAGGGATGCTTGAGTACGAACCGGCCAAGAGGTTCTCCATCCGGCAGATCCGGCAGCACAGGTGAGCGGCCCCTGGGGGCAGTGGGGCCGAGGCTGCAGGGAGGCCGGCCATGTGGGCAGCTGGTTGAGCGGGCGCTAGAGCAGGGCGTGGTGGGGGTGCCAGGCTGGGCTGGGGCCAGACCCCGTGCAGCGCCCGCAGTTCTCGGGGCCCGAGTGGGGTCTCTGGGCAGTGTCCTGTTACCGGCCAGACCCAGGCGCCTTGTCCGAACTGGGGTCTGAGTGAGGACATGCGTCCGTCCCTGCCCTAGGCATGGAGATGCGCCAGGAAGGGCACAGCTGGTCCCAAACACTGGCGAGAGCCTCTCTTTTTCCCCTCCTCCTGGGGCTCCCAGCAGCAGGGTGTGGCTGGGATCCAGCCCAGGGCCCCCAGCTCCATGACAGGGAAGACAGAGCAGCGGACGGGGTCAGCAGGCCCCACAGTGCCGCCTCCCTCACTTCGTGGGCTCTGCTCCTCTGCACCAGCCCCTGGAGGCCCTTGAGCCG	-			P-0086127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	60	204	0	ENST00000326873.7:c.862+126_920+482del		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																																
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0085356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	82	404	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974739	21974739	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	61	472	0	ENST00000304494.5:c.88del	p.Ala30ArgfsTer23	p.A30Rfs*23	ENST00000304494	NM_000077.4	30	Gcg/cg																																																																															
ATRX	546	MSKCC	GRCh37	X	76813088	76813088	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	43	199	0	ENST00000373344.5:c.6533G>T	p.Arg2178Leu	p.R2178L	ENST00000373344	NM_000489.3	2178	cGg/cTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542680	187542680	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	76	450	0	ENST00000441802.2:c.5060G>T	p.Gly1687Val	p.G1687V	ENST00000441802	NM_005245.3	1687	gGg/gTg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193218949	193218949	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	126	391	0	ENST00000367435.3:c.1507A>G	p.Lys503Glu	p.K503E	ENST00000367435	NM_024529.4	503	Aaa/Gaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436112	49436112	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0085356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	89	407	0	ENST00000301067.7:c.5869G>T	p.Glu1957Ter	p.E1957*	ENST00000301067	NM_003482.3	1957	Gag/Tag																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59938806	59938806	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0085356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	31	308	0	ENST00000259008.2:c.93+2T>C		p.X31_splice	ENST00000259008	NM_032043.2	31																																																																																
KDM5A	5927	MSKCC	GRCh37	12	498248	498248	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	40	311	0	ENST00000399788.2:c.10G>T	p.Val4Leu	p.V4L	ENST00000399788	NM_001042603.1	4	Gtg/Ttg																																																																															
GAB1	2549	MSKCC	GRCh37	4	144336869	144336869	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	79	411	0	ENST00000262994.4:c.312G>T	p.Met104Ile	p.M104I	ENST00000262994	NM_002039.3	104	atG/atT																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422125	47422125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	69	405	0	ENST00000404338.3:c.193G>T	p.Gly65Trp	p.G65W	ENST00000404338	NM_004491.4	65	Ggg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603082	48603082	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	60	332	0	ENST00000342988.3:c.1383G>T	p.Gln461His	p.Q461H	ENST00000342988	NM_005359.5	461	caG/caT																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911680	32911680	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs775030825		P-0085356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	62	376	0	ENST00000380152.3:c.3188A>T	p.Gln1063Leu	p.Q1063L	ENST00000380152		1063	cAg/cTg																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733667	85733667	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0085356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	40	347	0	ENST00000370580.1:c.347-2A>G		p.X116_splice	ENST00000370580	NM_003921.4	116																																																																																
MEN1	4221	MSKCC	GRCh37	11	64577222	64577224	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs794728657		P-0085434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	114	564	0	ENST00000337652.1:c.358_360del	p.Lys120del	p.K120del	ENST00000337652	NM_130803.2	120	AAG/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0084240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	163	331	0	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
MYD88	4615	MSKCC	GRCh37	3	38182734	38182734	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	184	451	0	ENST00000396334.3:c.887C>G	p.Ser296Cys	p.S296C	ENST00000396334	NM_002468.4	296	tCt/tGt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246587	41246600	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTGTTATGTTGG	ATCTGTTATGTTGG	-			P-0084240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	190	500	0	ENST00000357654.3:c.948_961del	p.Ser316ArgfsTer5	p.S316Rfs*5	ENST00000357654	NM_007294.3	316	agCCAACATAACAGATgg/aggg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918211	50918211	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	128	475	0	ENST00000440232.2:c.2528T>C	p.Leu843Pro	p.L843P	ENST00000440232	NM_002691.3	843	cTg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0085591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	168	183	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0085591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	235	280	0	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412743	63412743	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0085591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			51	343	143	0	ENST00000330258.3:c.424A>T	p.Arg142Ter	p.R142*	ENST00000330258	NM_152424.3	142	Aga/Tga																																																																															
CTR9	9646	MSKCC	GRCh37	11	10794726	10794726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1397467879		P-0085591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	465	209	0	ENST00000361367.2:c.2633G>A	p.Arg878Gln	p.R878Q	ENST00000361367	NM_014633.3	878	cGg/cAg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93974408	93974408	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	113	178	0	ENST00000369303.4:c.1646C>G	p.Ser549Cys	p.S549C	ENST00000369303	NM_004440.3	549	tCc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112174178	112174179	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTTTAAAT			P-0085591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	303	292	0	ENST00000257430.4:c.2888_2895dup	p.Ser966ValfsTer2	p.S966Vfs*2	ENST00000257430	NM_000038.5	963	agt/aGTTTAAATgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0085592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	316	234	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
BCL2	596	MSKCC	GRCh37	18	60985740	60985740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	147	206	0	ENST00000333681.4:c.160G>A	p.Gly54Arg	p.G54R	ENST00000333681		54	Ggg/Agg																																																																															
NF1	4763	MSKCC	GRCh37	17	29592251	29592251	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs797044942		P-0085592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	218	194	0	ENST00000358273.4:c.4729C>T	p.Gln1577Ter	p.Q1577*	ENST00000358273	NM_001042492.2	1577	Cag/Tag																																																																															
YES1	7525	MSKCC	GRCh37	18	739788	739788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	143	192	0	ENST00000314574.4:c.1084G>A	p.Glu362Lys	p.E362K	ENST00000314574	NM_005433.3	362	Gaa/Aaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685301	89685301	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0085592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	152	169	0	ENST00000371953.3:c.196A>T	p.Lys66Ter	p.K66*	ENST00000371953	NM_000314.4	66	Aag/Tag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52597429	52597429	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0085592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	330	265	0	ENST00000394830.3:c.3881T>G	p.Leu1294Ter	p.L1294*	ENST00000394830	NM_018313.4	1294	tTa/tGa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600339	10600339	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0085592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	251	236	0	ENST00000171111.5:c.1516del	p.Ile506SerfsTer26	p.I506Sfs*26	ENST00000171111	NM_203500.1	506	Atc/tc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0085593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	124	233	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056274	180056274	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770915197		P-0085593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	35	318	0	ENST00000261937.6:c.970G>A	p.Glu324Lys	p.E324K	ENST00000261937	NM_182925.4	324	Gag/Aag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868282	37868282	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	115	277	0	ENST00000269571.5:c.1003A>T	p.Ser335Cys	p.S335C	ENST00000269571		335	Agc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256528	16256528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0085593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	61	324	0	ENST00000375759.3:c.3793C>T	p.Arg1265Ter	p.R1265*	ENST00000375759	NM_015001.2	1265	Cga/Tga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165290	47165290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	41	287	1	ENST00000409792.3:c.836C>T	p.Ser279Leu	p.S279L	ENST00000409792	NM_014159.6	279	tCa/tTa																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540159	23540159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	112	241	0	ENST00000380871.4:c.244G>A	p.Ala82Thr	p.A82T	ENST00000380871	NM_006167.3	82	Gcc/Acc																																																																															
CBFB	865	MSKCC	GRCh37	16	67063378	67063379	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0085593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	104	245	0	ENST00000412916.2:c.69dup	p.Glu24ArgfsTer3	p.E24Rfs*3	ENST00000412916		23	cgc/cgCc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347647	89347647	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0085593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	54	334	0	ENST00000301030.4:c.5303C>G	p.Ser1768Ter	p.S1768*	ENST00000301030	NM_001256183.1	1768	tCa/tGa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830226	72830226	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0085593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	146	296	0	ENST00000268489.5:c.6355G>T	p.Gly2119Ter	p.G2119*	ENST00000268489	NM_006885.3	2119	Gga/Tga																																																																															
CTR9	9646	MSKCC	GRCh37	11	10785695	10785695	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	131	277	0	ENST00000361367.2:c.1231G>C	p.Asp411His	p.D411H	ENST00000361367	NM_014633.3	411	Gat/Cat																																																																															
ALK	238	MSKCC	GRCh37	2	29420477	29420477	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	131	250	0	ENST00000389048.3:c.4004A>G	p.Asn1335Ser	p.N1335S	ENST00000389048	NM_004304.4	1335	aAc/aGc																																																																															
CDH1	999	MSKCC	GRCh37	16	68844247	68844247	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	T			P-0085593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	106	188	0	ENST00000261769.5:c.832+3A>T		p.X278_splice	ENST00000261769	NM_004360.3	278																																																																																
TRAF2	7186	MSKCC	GRCh37	9	139815538	139815538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	137	257	0	ENST00000247668.2:c.1009G>A	p.Asp337Asn	p.D337N	ENST00000247668	NM_021138.3	337	Gac/Aac																																																																															
STK11	6794	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs878853247		P-0075307-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			463	283	388	0	ENST00000326873.7:c.709G>T	p.Asp237Tyr	p.D237Y	ENST00000326873	NM_000455.4	237	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0075307-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			427	49	228	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7976584	7976584	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075307-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			505	70	336	0	ENST00000319144.4:c.1808C>G	p.Pro603Arg	p.P603R	ENST00000319144	NM_001139.2	603	cCg/cGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0079253-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			585	112	265	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079253-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			362	95	291	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101054	27101054	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079253-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			612	146	418	0	ENST00000324856.7:c.4336C>T	p.Arg1446Ter	p.R1446*	ENST00000324856	NM_006015.4	1446	Cga/Tga																																																																															
SLX4	84464	MSKCC	GRCh37	16	3652140	3652140	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759447034		P-0079253-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			785	114	400	0	ENST00000294008.3:c.929G>A	p.Arg310Gln	p.R310Q	ENST00000294008	NM_032444.2	310	cGa/cAa																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976100	18976100	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs750432625		P-0079253-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			675	138	457	0	ENST00000262803.5:c.2860C>T	p.Arg954Trp	p.R954W	ENST00000262803	NM_002911.3	954	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434181	49434181	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079253-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			788	148	573	0	ENST00000301067.7:c.7372C>T	p.Gln2458Ter	p.Q2458*	ENST00000301067	NM_003482.3	2458	Cag/Tag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060728	38060728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079253-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			929	212	538	0	ENST00000250448.2:c.1261G>A	p.Glu421Lys	p.E421K	ENST00000250448	NM_004496.3	421	Gaa/Aaa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37649003	37649003	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0079253-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	90	197	0	ENST00000447079.4:c.2109-1G>C		p.X703_splice	ENST00000447079	NM_015083.1	703																																																																																
TBX3	6926	MSKCC	GRCh37	12	115109901	115109902	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0079253-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			606	124	360	0	ENST00000257566.3:c.1975_1976dup	p.Leu660ProfsTer230	p.L660Pfs*230	ENST00000257566	NM_016569.3	659	gcc/gcGCc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852110	63852110	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0079253-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			727	131	442	0	ENST00000279873.7:c.2888C>G	p.Ser963Ter	p.S963*	ENST00000279873	NM_032199.2	963	tCa/tGa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487277	56487277	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1035001455		P-0085256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	8	259	0	ENST00000267101.3:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000267101	NM_001982.3	475	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579592	7579592	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0085256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			213	10	272	0	ENST00000269305.4:c.97-2A>T		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
RAD54L	8438	MSKCC	GRCh37	1	46715679	46715679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			213	18	231	0	ENST00000371975.4:c.98G>A	p.Arg33Lys	p.R33K	ENST00000371975	NM_003579.3	33	aGg/aAg																																																																															
POT1	25913	MSKCC	GRCh37	7	124510965	124510965	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0085256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			151	10	222	0	ENST00000357628.3:c.255G>T	p.Lys85Asn	p.K85N	ENST00000357628	NM_015450.2	85	aaG/aaT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120300	94120300	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	21	382	0	ENST00000369303.4:c.751A>G	p.Ser251Gly	p.S251G	ENST00000369303	NM_004440.3	251	Agt/Ggt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180593	94180593	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			245	29	283	0	ENST00000323929.3:c.1575G>T	p.Arg525Ser	p.R525S	ENST00000323929	NM_005591.3	525	agG/agT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584642	187584643	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0085256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			286	20	298	0	ENST00000441802.2:c.3390_3391delinsTT	p.Glu1130_Asp1131delinsAspTyr	p.E1130_D1131delinsDY	ENST00000441802	NM_005245.3	1130	gaGGat/gaTTat																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713295	30713295	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			431	38	398	0	ENST00000359013.4:c.695G>C	p.Arg232Pro	p.R232P	ENST00000359013	NM_001024847.2	232	cGg/cCg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504320	8504320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			313	21	319	0	ENST00000356435.5:c.1763G>T	p.Arg588Leu	p.R588L	ENST00000356435		588	cGc/cTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8317900	8317900	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			265	22	247	0	ENST00000356435.5:c.5713G>T	p.Gly1905Cys	p.G1905C	ENST00000356435		1905	Ggc/Tgc																																																																															
HGF	3082	MSKCC	GRCh37	7	81359060	81359060	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0085256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			206	22	295	0	ENST00000222390.5:c.901G>T	p.Glu301Ter	p.E301*	ENST00000222390	NM_000601.4	301	Gaa/Taa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046511	69046511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0085256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			228	17	283	0	ENST00000288368.4:c.3984G>T	p.Leu1328Phe	p.L1328F	ENST00000288368	NM_024870.2	1328	ttG/ttT																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871241	35871241	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			479	36	224	0	ENST00000216797.5:c.932G>C	p.Gly311Ala	p.G311A	ENST00000216797	NM_020529.2	311	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0085712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	320	376	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210834	2210834	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374446300		P-0085712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	182	354	0	ENST00000398665.3:c.1331C>T	p.Thr444Met	p.T444M	ENST00000398665	NM_032482.2	444	aCg/aTg																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961562	54961562	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188825988		P-0085712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	189	341	0	ENST00000312783.6:c.70C>T	p.Arg24Cys	p.R24C	ENST00000312783	NM_198436.1	24	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0085712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	171	280	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175417	112175418	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0085712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	191	341	0	ENST00000257430.4:c.4127_4128del	p.Tyr1376CysfsTer9	p.Y1376Cfs*9	ENST00000257430	NM_000038.5	1376	TAt/t																																																																															
RAD21	5885	MSKCC	GRCh37	8	117878848	117878848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	265	332	0	ENST00000297338.2:c.121G>A	p.Val41Met	p.V41M	ENST00000297338	NM_006265.2	41	Gtg/Atg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989590	212989591	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0085713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			714	83	354	1	ENST00000342788.4:c.119_120dup	p.Asp41LeufsTer26	p.D41Lfs*26	ENST00000342788	NM_005235.2	40	-/CT																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0085728-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	70	287	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0085728-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	81	357	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56482552	56482552	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1439217874		P-0085728-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	77	336	0	ENST00000267101.3:c.1009G>C	p.Gly337Arg	p.G337R	ENST00000267101	NM_001982.3	337	Ggg/Cgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0085728-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	113	290	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
CYLD	1540	MSKCC	GRCh37	16	50785715	50785715	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085728-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	86	280	0	ENST00000398568.2:c.705A>C	p.Arg235Ser	p.R235S	ENST00000398568	NM_001042412.1	235	agA/agC																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041739	29041739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066267-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			353	89	241	0	ENST00000282397.4:c.80C>T	p.Ser27Leu	p.S27L	ENST00000282397	NM_002019.4	27	tCa/tTa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267698	198267698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066267-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			519	106	378	0	ENST00000335508.6:c.1781G>A	p.Arg594Gln	p.R594Q	ENST00000335508	NM_012433.2	594	cGa/cAa																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21345976	21345976	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768361273		P-0066267-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			527	133	451	0	ENST00000215739.8:c.851G>A	p.Arg284His	p.R284H	ENST00000215739	NM_006767.3	284	cGc/cAc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52696220	52696220	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066267-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	148	340	0	ENST00000394830.3:c.457C>T	p.Gln153Ter	p.Q153*	ENST00000394830	NM_018313.4	153	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539114	187539114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066267-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			416	134	447	0	ENST00000441802.2:c.8626G>A	p.Asp2876Asn	p.D2876N	ENST00000441802	NM_005245.3	2876	Gac/Aac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873549	151873549	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066267-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			534	157	447	0	ENST00000262189.6:c.8989C>T	p.Gln2997Ter	p.Q2997*	ENST00000262189	NM_170606.2	2997	Caa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877860	151877878	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGTTGGCACAGGTCCAG	GAAGTTGGCACAGGTCCAG	-			P-0066267-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			611	128	449	0	ENST00000262189.6:c.7067_7085del	p.Pro2356GlnfsTer3	p.P2356Qfs*3	ENST00000262189	NM_170606.2	2356	cCTGGACCTGTGCCAACTTCa/ca																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112495	115112496	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0066267-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			453	185	413	0	ENST00000257566.3:c.1244dup	p.His415GlnfsTer6	p.H415Qfs*6	ENST00000257566	NM_016569.3	415	cac/caAc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647364	23647364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066267-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			583	97	366	0	ENST00000261584.4:c.503C>T	p.Ser168Leu	p.S168L	ENST00000261584	NM_024675.3	168	tCa/tTa																																																																															
CDH1	999	MSKCC	GRCh37	16	68853317	68853321	+	frameshift_variant	Frame_Shift_Del	DEL	CTACA	CTACA	TTAC			P-0066267-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	152	305	0	ENST00000261769.5:c.1700_1704delinsTTAC	p.Ala567ValfsTer17	p.A567Vfs*17	ENST00000261769	NM_004360.3	567	gCTACA/gTTAC																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40364003	40364003	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0066267-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			493	87	297	0	ENST00000293328.3:c.1679G>A	p.Arg560Lys	p.R560K	ENST00000293328	NM_012448.3	560	aGg/aAg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905887	50905887	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066267-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			571	147	417	0	ENST00000440232.2:c.859G>C	p.Glu287Gln	p.E287Q	ENST00000440232	NM_002691.3	287	Gag/Cag																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271237	26271237	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066267-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1091	225	439	0	ENST00000305910.3:c.376C>T	p.Gln126Ter	p.Q126*	ENST00000305910	NM_003534.2	126	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151846212	151846212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066267-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			549	127	353	0	ENST00000262189.6:c.12800C>T	p.Ser4267Leu	p.S4267L	ENST00000262189	NM_170606.2	4267	tCa/tTa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0083593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	140	342	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0083593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	115	314	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858738	9858738	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149698593		P-0083593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			41	118	422	0	ENST00000330684.3:c.2663C>T	p.Thr888Met	p.T888M	ENST00000330684	NM_001134407.1	888	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0083593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	164	517	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212537939	212537939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	69	360	0	ENST00000342788.4:c.1666G>A	p.Asp556Asn	p.D556N	ENST00000342788	NM_005235.2	556	Gac/Aac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974679	21974679	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A	rs864622636		P-0083593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	150	488	0	ENST00000304494.5:c.148C>T	p.Gln50Ter	p.Q50*	ENST00000304494	NM_000077.4	50	Cag/Tag																																																																															
FH	2271	MSKCC	GRCh37	1	241682985	241682985	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	102	405	0	ENST00000366560.3:c.38C>A	p.Pro13His	p.P13H	ENST00000366560	NM_000143.3	13	cCc/cAc																																																																															
RET	5979	MSKCC	GRCh37	10	43596168	43596168	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0083593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	60	433	0	ENST00000355710.3:c.335G>A	p.Arg112His	p.R112H	ENST00000355710	NM_020975.4	112	cGc/cAc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0083884-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			247	87	389	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs926053251		P-0083884-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			383	144	413	0	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68842438	68842438	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0083884-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			302	98	397	0	ENST00000261769.5:c.499G>T	p.Glu167Ter	p.E167*	ENST00000261769	NM_004360.3	167	Gaa/Taa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829616	72829616	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745878919		P-0083884-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			316	63	398	0	ENST00000268489.5:c.6965G>A	p.Arg2322Gln	p.R2322Q	ENST00000268489	NM_006885.3	2322	cGa/cAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48602981	48603014	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATAGTATGAAATGTTTTTTCTTAAAAGGTCTTTG	ATAGTATGAAATGTTTTTTCTTAAAAGGTCTTTG	-			P-0083884-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			65	343	260	0	ENST00000342988.3:c.1309-25_1317del		p.X437_splice	ENST00000342988	NM_005359.5	437																																																																																
TP53	7157	MSKCC	GRCh37	17	7577099	7577100	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0083884-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			172	315	464	0	ENST00000269305.4:c.838dup	p.Arg280LysfsTer26	p.R280Kfs*26	ENST00000269305	NM_001126112.2	280	aga/aAga																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560476	95560476	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083884-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			133	279	393	0	ENST00000343455.3:c.5113G>C	p.Glu1705Gln	p.E1705Q	ENST00000343455	NM_177438.2	1705	Gaa/Caa																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858494	27858494	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188857118		P-0083884-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			300	340	624	1	ENST00000359303.2:c.77C>T	p.Ala26Val	p.A26V	ENST00000359303	NM_003535.2	26	gCg/gTg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760977	59760977	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1279870189		P-0083884-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			63	152	473	0	ENST00000259008.2:c.3430G>A	p.Glu1144Lys	p.E1144K	ENST00000259008	NM_032043.2	1144	Gaa/Aaa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760986	59760986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083884-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			57	154	485	0	ENST00000259008.2:c.3421G>T	p.Asp1141Tyr	p.D1141Y	ENST00000259008	NM_032043.2	1141	Gat/Tat																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989496	212989496	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083884-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	41	377	0	ENST00000342788.4:c.215G>T	p.Arg72Leu	p.R72L	ENST00000342788	NM_005235.2	72	cGg/cTg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225360640	225360657	+	inframe_deletion	In_Frame_Del	DEL	CCAGTTACTTGTGCACCT	CCAGTTACTTGTGCACCT	-			P-0083884-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			335	29	323	0	ENST00000264414.4:c.1734_1751del	p.Gly579_Gly584del	p.G579_G584del	ENST00000264414	NM_003590.4	578	ggAGGTGCACAAGTAACTGGc/ggc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106522562	106522562	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0083884-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			134	33	233	0	ENST00000359195.3:c.2539A>G	p.Ile847Val	p.I847V	ENST00000359195	NM_002649.2	847	Att/Gtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0085401-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			584	155	298	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468028	50468029	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0085401-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			763	127	393	0	ENST00000331340.3:c.1268_1269del	p.Arg423GlnfsTer65	p.R423Qfs*65	ENST00000331340	NM_006060.4	421	caCGcg/cacg																																																																															
CCND2	894	MSKCC	GRCh37	12	4383306	4383306	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085401-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			678	60	310	0	ENST00000261254.3:c.100G>C	p.Glu34Gln	p.E34Q	ENST00000261254	NM_001759.3	34	Gag/Cag																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38172952	38172952	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085401-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			559	72	242	0	ENST00000317025.8:c.2097G>C	p.Lys699Asn	p.K699N	ENST00000317025	NM_023034.1	699	aaG/aaC																																																																															
STK11	6794	MSKCC	GRCh37	19	1207040	1207040	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085401-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			552	155	327	0	ENST00000326873.7:c.129del	p.Lys44SerfsTer7	p.K44Sfs*7	ENST00000326873	NM_000455.4	43	gCc/gc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447268	49447268	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085401-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			801	100	324	0	ENST00000301067.7:c.830A>G	p.Gln277Arg	p.Q277R	ENST00000301067	NM_003482.3	277	cAa/cGa																																																																															
RET	5979	MSKCC	GRCh37	10	43598018	43598018	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085401-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			775	154	354	0	ENST00000355710.3:c.566G>T	p.Arg189Leu	p.R189L	ENST00000355710	NM_020975.4	189	cGc/cTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216378	36216378	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0085401-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			749	147	354	0	ENST00000222270.7:c.3643-2A>G		p.X1215_splice	ENST00000222270	NM_014727.1	1215																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10610235	10610235	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085401-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			643	176	376	0	ENST00000171111.5:c.475G>T	p.Ala159Ser	p.A159S	ENST00000171111	NM_203500.1	159	Gct/Tct																																																																															
SOS1	6654	MSKCC	GRCh37	2	39285844	39285845	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGAGATAAAGGGTTTCTTCGCTTCCTCTTTTCA			P-0085401-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			551	61	221	0	ENST00000402219.2:c.282_314dup	p.Glu95_Leu105dup	p.E95_L105dup	ENST00000402219	NM_005633.3	95	ctc/ctTGAAAAGAGGAAGCGAAGAAACCCTTTATCTCTc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488672	212488672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085401-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			749	76	354	0	ENST00000342788.4:c.2177C>T	p.Ser726Leu	p.S726L	ENST00000342788	NM_005235.2	726	tCa/tTa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675892	30675892	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0085401-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			776	74	333	0	ENST00000376406.3:c.2464G>T	p.Glu822Ter	p.E822*	ENST00000376406	NM_014641.2	822	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0085456-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	54	324	3	ENST00000257430.4:c.3919dup	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0085456-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	67	373	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0085456-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	102	428	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026204	48026204	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs63750440		P-0085456-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	51	385	0	ENST00000234420.5:c.1082G>A	p.Arg361His	p.R361H	ENST00000234420	NM_000179.2	361	cGc/cAc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104375147	104375148	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0085456-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	16	331	0	ENST00000369902.3:c.1149_1150del	p.Cys384ProfsTer14	p.C384Pfs*14	ENST00000369902	NM_016169.3	382	cCT/c																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38591735	38591735	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085456-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	42	237	0	ENST00000299084.4:c.194T>A	p.Leu65His	p.L65H	ENST00000299084	NM_152594.2	65	cTc/cAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69009375	69009375	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085456-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	22	328	0	ENST00000288368.4:c.2492T>C	p.Ile831Thr	p.I831T	ENST00000288368	NM_024870.2	831	aTc/aCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0085480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	192	380	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0085480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	88	382	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953334	17953334	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs553739688		P-0085480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	74	324	0	ENST00000458235.1:c.652C>T	p.Arg218Cys	p.R218C	ENST00000458235	NM_000215.3	218	Cgc/Tgc																																																																															
STK19	8859	MSKCC	GRCh37	6	31939823	31939823	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs34548063		P-0085480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	194	289	0	ENST00000375331.2:c.50G>A	p.Trp17Ter	p.W17*	ENST00000375331	NM_004197.1	17	tGg/tAg																																																																															
ATM	472	MSKCC	GRCh37	11	108173724	108173724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	77	271	0	ENST00000278616.4:c.5464G>A	p.Glu1822Lys	p.E1822K	ENST00000278616	NM_000051.3	1822	Gaa/Aaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971024	21971024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	191	290	0	ENST00000304494.5:c.334del	p.Arg112ValfsTer34	p.R112Vfs*34	ENST00000304494	NM_000077.4	112	Cgt/gt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953094	81953094	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	90	313	0	ENST00000359376.3:c.2063del	p.Gly688AlafsTer3	p.G688Afs*3	ENST00000359376	NM_002661.3	687	aGg/ag																																																																															
KDR	3791	MSKCC	GRCh37	4	55955857	55955857	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0085480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	157	212	0	ENST00000263923.4:c.3304+1G>A		p.X1102_splice	ENST00000263923	NM_002253.2	1102																																																																																
BRCA2	675	MSKCC	GRCh37	13	32907311	32907311	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	246	367	0	ENST00000380152.3:c.1696A>G	p.Thr566Ala	p.T566A	ENST00000380152		566	Acc/Gcc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18691213	18691213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	300	282	0	ENST00000266497.5:c.3324G>T	p.Lys1108Asn	p.K1108N	ENST00000266497		1108	aaG/aaT																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061522	38061522	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	149	312	0	ENST00000250448.2:c.467G>T	p.Gly156Val	p.G156V	ENST00000250448	NM_004496.3	156	gGc/gTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292490	15292490	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	96	404	0	ENST00000263388.2:c.2689G>T	p.Gly897Cys	p.G897C	ENST00000263388	NM_000435.2	897	Ggc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629967	187629967	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	232	364	0	ENST00000441802.2:c.1015A>G	p.Lys339Glu	p.K339E	ENST00000441802	NM_005245.3	339	Aaa/Gaa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56872927	56872927	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	173	289	0	ENST00000308159.5:c.2082C>A	p.Asp694Glu	p.D694E	ENST00000308159	NM_014669.4	694	gaC/gaA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411792	63411792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	195	200	0	ENST00000330258.3:c.1375G>A	p.Asp459Asn	p.D459N	ENST00000330258	NM_152424.3	459	Gac/Aac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110017	115110017	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0085480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	147	260	0	ENST00000257566.3:c.1861A>C	p.Ser621Arg	p.S621R	ENST00000257566	NM_016569.3	621	Agc/Cgc																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230561565	230561565	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0085480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	125	296	0				ENST00000391860	NM_001258311.1																																																																																	
TP53	7157	MSKCC	GRCh37	17	7579494	7579494	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0085517-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	150	409	0	ENST00000269305.4:c.193A>T	p.Arg65Ter	p.R65*	ENST00000269305	NM_001126112.2	65	Aga/Tga																																																																															
RB1	5925	MSKCC	GRCh37	13	48936995	48936995	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587778842		P-0085517-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	127	271	0	ENST00000267163.4:c.763C>T	p.Arg255Ter	p.R255*	ENST00000267163	NM_000321.2	255	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242485	+	protein_altering_variant	In_Frame_Del	DEL	GAATTAAGAGAAGCAACATC	GAATTAAGAGAAGCAACATC	AT			P-0085517-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	94	273	1	ENST00000275493.2:c.2236_2255delinsAT	p.Glu746_Ser752delinsIle	p.E746_S752delinsI	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCAACATCt/ATt																																																																															
BLM	641	MSKCC	GRCh37	15	91303862	91303862	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085517-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	128	350	0	ENST00000355112.3:c.1259A>T	p.Asp420Val	p.D420V	ENST00000355112	NM_000057.2	420	gAt/gTt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115269693	115269693	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085517-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	99	289	0	ENST00000438362.2:c.1513A>G	p.Ile505Val	p.I505V	ENST00000438362	NM_001242891.1	505	Att/Gtt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2104421	2104421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085517-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	87	343	0	ENST00000219476.3:c.461C>T	p.Thr154Ile	p.T154I	ENST00000219476	NM_000548.3	154	aCc/aTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40828002	40828002	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085517-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	81	310	0	ENST00000373198.4:c.2426C>G	p.Thr809Ser	p.T809S	ENST00000373198	NM_133170.3	809	aCc/aGc																																																																															
ATRX	546	MSKCC	GRCh37	X	76937035	76937035	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0085517-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	100	151	0	ENST00000373344.5:c.3713A>C	p.His1238Pro	p.H1238P	ENST00000373344	NM_000489.3	1238	cAt/cCt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801107	1801107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085579-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	81	299	0	ENST00000260795.2:c.236C>T	p.Thr79Ile	p.T79I	ENST00000260795		79	aCa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121912651		P-0085598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	68	291	0	ENST00000269305.4:c.742C>G	p.Arg248Gly	p.R248G	ENST00000269305	NM_001126112.2	248	Cgg/Ggg																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281040	49281040	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	49	365	0	ENST00000282018.3:c.87G>T	p.Arg29Ser	p.R29S	ENST00000282018	NM_020377.2	29	agG/agT																																																																															
APC	324	MSKCC	GRCh37	5	112151191	112151191	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0085598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	21	197	0	ENST00000257430.4:c.835-1G>A		p.X279_splice	ENST00000257430	NM_000038.5	279																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114912158	114912158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	49	246	0	ENST00000543371.1:c.1228C>T	p.His410Tyr	p.H410Y	ENST00000543371	NM_001198531.1	410	Cat/Tat																																																																															
NF1	4763	MSKCC	GRCh37	17	29496997	29496997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0085598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	43	193	0	ENST00000358273.4:c.569del	p.Leu190Ter	p.L190*	ENST00000358273	NM_001042492.2	190	Tta/ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0085600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	235	425	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100177	157100177	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1487267556		P-0085600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	47	233	0	ENST00000346085.5:c.1114C>T	p.Arg372Trp	p.R372W	ENST00000346085	NM_020732.3	372	Cgg/Tgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524815	187524815	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778212581		P-0085600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	139	418	0	ENST00000441802.2:c.10865C>T	p.Thr3622Met	p.T3622M	ENST00000441802	NM_005245.3	3622	aCg/aTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55948168	55948168	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	23	223	0	ENST00000263923.4:c.3803A>T	p.Glu1268Val	p.E1268V	ENST00000263923	NM_002253.2	1268	gAg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175244	112175244	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0085600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	231	405	0	ENST00000257430.4:c.3953del	p.Asp1318ValfsTer3	p.D1318Vfs*3	ENST00000257430	NM_000038.5	1318	gAt/gt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212293145	212293145	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764667767		P-0085604-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	98	221	0	ENST00000342788.4:c.2707G>A	p.Val903Ile	p.V903I	ENST00000342788	NM_005235.2	903	Gtt/Att																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877366	28877366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1392528455		P-0085614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	350	359	0	ENST00000282397.4:c.3955G>A	p.Ala1319Thr	p.A1319T	ENST00000282397	NM_002019.4	1319	Gcg/Acg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577123	7577123	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs876660333		P-0085614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	181	475	0	ENST00000269305.4:c.815T>G	p.Val272Gly	p.V272G	ENST00000269305	NM_001126112.2	272	gTg/gGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0085614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	261	305	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581147	48581160	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATAGCTCCATCAAG	ATAGCTCCATCAAG	-			P-0085614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	98	300	0	ENST00000342988.3:c.455-4_464del		p.X152_splice	ENST00000342988	NM_005359.5	152																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21974818	21975453	+	coding_sequence_variant,5_prime_UTR_variant	In_Frame_Del	DEL	CGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCTCTGGTGACCAGCCAGCCCCTCCTCTTTCTTCCTCCGGTGCTGGCGGAAGAGCCCCCTCCGACCCTGTCCCTCAAATCCTCTGGAGGGACCGCGGTATCTTTCCAGGCAAGGGGACGCCGTGAGCGAGTGCTCGGAGGAGGTGCTATTAACTCCGAGCACTTAGCGAATGTGGCACCCCTGAAGTCGCCCCAGGTTGGGTCTCCCCCGGGGGCACCAGCCGGAAGCAGCCCTCGCCAGAGCCAGCGTTGGCAAGGAAGGAGGACTGGGCTCCTCCCCACCTGCCCCCCACACCGCCCTCCGGCCTCCCTGCTCCCAGCCGCGCTCCCCCGCCTGCCAGCAAAGGCGTGTTTGAGTGCGTTCACTCTGTTAAAAAGAAATCCGCCCCCGCCCCGTTTCCTTCCTCCGCGATACAACCTTCCTAACTGCCAAATTGAATCGGGGTGTTTGGTGTCATAGGGAAAGTATGGCTTCTTCTTTTAATCATAAGAAAAAGCAAAACTATTCTTTCCTAGTTGTGAGAGCCCCACCGAGAATCGAAATCACCTGTACGACTA	CGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCTCTGGTGACCAGCCAGCCCCTCCTCTTTCTTCCTCCGGTGCTGGCGGAAGAGCCCCCTCCGACCCTGTCCCTCAAATCCTCTGGAGGGACCGCGGTATCTTTCCAGGCAAGGGGACGCCGTGAGCGAGTGCTCGGAGGAGGTGCTATTAACTCCGAGCACTTAGCGAATGTGGCACCCCTGAAGTCGCCCCAGGTTGGGTCTCCCCCGGGGGCACCAGCCGGAAGCAGCCCTCGCCAGAGCCAGCGTTGGCAAGGAAGGAGGACTGGGCTCCTCCCCACCTGCCCCCCACACCGCCCTCCGGCCTCCCTGCTCCCAGCCGCGCTCCCCCGCCTGCCAGCAAAGGCGTGTTTGAGTGCGTTCACTCTGTTAAAAAGAAATCCGCCCCCGCCCCGTTTCCTTCCTCCGCGATACAACCTTCCTAACTGCCAAATTGAATCGGGGTGTTTGGTGTCATAGGGAAAGTATGGCTTCTTCTTTTAATCATAAGAAAAAGCAAAACTATTCTTTCCTAGTTGTGAGAGCCCCACCGAGAATCGAAATCACCTGTACGACTA	-			P-0085614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	122	502	0				ENST00000304494	NM_000077.4			3-Jan																																																																														
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078656-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			272	148	461	0	ENST00000269305.4:c.528C>A	p.Cys176Ter	p.C176*	ENST00000269305	NM_001126112.2	176	tgC/tgA																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120461101	120461101	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs312262796		P-0078656-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			499	35	438	0	ENST00000256646.2:c.5857C>T	p.Arg1953Cys	p.R1953C	ENST00000256646	NM_024408.3	1953	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0078656-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			177	63	245	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2161722	2161722	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078656-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			297	131	375	0	ENST00000349721.2:c.4018G>T	p.Glu1340Ter	p.E1340*	ENST00000349721	NM_003070.3	1340	Gaa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057941	27057954	+	frameshift_variant	Frame_Shift_Del	DEL	CCTACTCACAGCCA	CCTACTCACAGCCA	-			P-0078656-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			522	155	496	0	ENST00000324856.7:c.1650_1663del	p.Tyr551GlyfsTer67	p.Y551Gfs*67	ENST00000324856	NM_006015.4	550	cCCTACTCACAGCCA/c																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63537635	63538270	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTGTTTCTTACTGCCCACACGATAAGGAGGAATTCCATCTCTAAGGGAAAGGAAAAGACAGAATCCACAGGCTTACGAGGATGTTTTCAGCACATCACATGGGCTACTGTCATATGCCATCTTGAGATCCCGCCGACAGGGCCACATGCTTCCATAGGAGTGTCACATGTCTCCAGATACCATCGGTGCTCCCACAGGGAAGGACCCACCCAAGGTCAAATTTAAATCCTGCCCATCAATCATCTATGGAAACTTGGCTTCCTTGGATGCAGAAGCATCAACTTGGAAAGAGCCTGGAAAGTTAATCTCTCGGACTGTTGTCTTAGAACTGGGTTACACTCCAGCCAGCCCAGGCAGAGCAAAGGCTCCCCTATTTTACAGGTGCCCTAAGTAGGAGATTCTCAGGCCCCACTGGTCCTCCCACTTGTTCCCACTGCTTCAAACCAGGAACCAGTGCCTTATGGATAGGGCCAGGGCAGAAAGTTGTAGGGATAAGAACCAAACCTACAGAGGGCTAAATCAGGCATTAGTGAAGCATGCATAACTCTCCAAGTCAACCTCCTAGTCATTTCCAAATGTATTTCTTTTTATAAACCAGTACAGCGTGATTAATAAAAAGAATATATAACATTTAG	GCTGTTTCTTACTGCCCACACGATAAGGAGGAATTCCATCTCTAAGGGAAAGGAAAAGACAGAATCCACAGGCTTACGAGGATGTTTTCAGCACATCACATGGGCTACTGTCATATGCCATCTTGAGATCCCGCCGACAGGGCCACATGCTTCCATAGGAGTGTCACATGTCTCCAGATACCATCGGTGCTCCCACAGGGAAGGACCCACCCAAGGTCAAATTTAAATCCTGCCCATCAATCATCTATGGAAACTTGGCTTCCTTGGATGCAGAAGCATCAACTTGGAAAGAGCCTGGAAAGTTAATCTCTCGGACTGTTGTCTTAGAACTGGGTTACACTCCAGCCAGCCCAGGCAGAGCAAAGGCTCCCCTATTTTACAGGTGCCCTAAGTAGGAGATTCTCAGGCCCCACTGGTCCTCCCACTTGTTCCCACTGCTTCAAACCAGGAACCAGTGCCTTATGGATAGGGCCAGGGCAGAAAGTTGTAGGGATAAGAACCAAACCTACAGAGGGCTAAATCAGGCATTAGTGAAGCATGCATAACTCTCCAAGTCAACCTCCTAGTCATTTCCAAATGTATTTCTTTTTATAAACCAGTACAGCGTGATTAATAAAAAGAATATATAACATTTAG	-			P-0078656-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			308	18	340	0	ENST00000307078.5:c.957-595_997del		p.X319_splice	ENST00000307078	NM_004655.3	319																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66535420	66535420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078656-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			212	62	343	0	ENST00000273854.3:c.41C>T	p.Pro14Leu	p.P14L	ENST00000273854	NM_004439.5	14	cCc/cTc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10259638	10259638	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078656-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	87	351	0	ENST00000340748.4:c.2594A>G	p.Tyr865Cys	p.Y865C	ENST00000340748		865	tAc/tGc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939161	36939161	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078656-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			340	79	525	0	ENST00000361632.4:c.548A>G	p.Gln183Arg	p.Q183R	ENST00000361632		183	cAg/cGg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914800	32914800	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078656-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			324	141	411	0	ENST00000380152.3:c.6308C>A	p.Ser2103Ter	p.S2103*	ENST00000380152		2103	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0079108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	87	323	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs864622007		P-0079108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	48	225	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0085336-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	259	382	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0085336-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	508	201	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73336094	73336094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085336-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	51	269	0	ENST00000377767.4:c.2309C>T	p.Pro770Leu	p.P770L	ENST00000377767	NM_014953.3	770	cCa/cTa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609568	81609568	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085336-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	134	394	0	ENST00000298171.2:c.1166T>C	p.Ile389Thr	p.I389T	ENST00000298171	NM_000369.2	389	aTa/aCa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857037	9857037	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	25	318	0	ENST00000330684.3:c.4364A>G	p.Lys1455Arg	p.K1455R	ENST00000330684	NM_001134407.1	1455	aAg/aGg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178155	56178155	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	181	410	0	ENST00000399503.3:c.3131del	p.Pro1044GlnfsTer38	p.P1044Qfs*38	ENST00000399503	NM_005921.1	1043	tCc/tc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	48	352	0	ENST00000347630.2:c.392G>T	p.Trp131Leu	p.W131L	ENST00000347630	NM_001007230.1	131	tGg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0085475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	199	330	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11177098	11177098	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	141	302	0	ENST00000361445.4:c.6979A>G	p.Met2327Val	p.M2327V	ENST00000361445	NM_004958.3	2327	Atg/Gtg																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0085475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	181	237	1	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0085475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	170	333	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0085475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	216	274	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0085475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			71	144	226	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0085475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	243	371	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0085477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	172	523	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP63	8626	MSKCC	GRCh37	3	189587118	189587118	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761885185		P-0085477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	91	345	0	ENST00000264731.3:c.1135C>T	p.Arg379Cys	p.R379C	ENST00000264731	NM_003722.4	379	Cgt/Tgt																																																																															
RET	5979	MSKCC	GRCh37	10	43615578	43615578	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373594744		P-0085477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	92	479	0	ENST00000355710.3:c.2657G>A	p.Arg886Gln	p.R886Q	ENST00000355710	NM_020975.4	886	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112174675	112174676	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0085477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	70	485	0	ENST00000257430.4:c.3385_3386del	p.Leu1129ValfsTer5	p.L1129Vfs*5	ENST00000257430	NM_000038.5	1128	tcTTtg/tctg																																																																															
APC	324	MSKCC	GRCh37	5	112175291	112175292	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0085477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	116	426	0	ENST00000257430.4:c.4000_4001insA	p.Ser1334TyrfsTer8	p.S1334Yfs*8	ENST00000257430	NM_000038.5	1334	tcc/tAcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0085478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	24	388	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467497	25467497	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1372858208		P-0085479-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	66	408	0	ENST00000264709.3:c.1579C>T	p.Gln527Ter	p.Q527*	ENST00000264709	NM_175629.2	527	Cag/Tag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0085479-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	30	246	0				ENST00000310581	NM_198253.2																																																																																	
EGFR	1956	MSKCC	GRCh37	7	55242467	55242487	+	frameshift_variant	Frame_Shift_Del	DEL	AATTAAGAGAAGCAACATCTC	AATTAAGAGAAGCAACATCTC	T	rs121913422		P-0085479-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	72	271	0	ENST00000275493.2:c.2237_2257delinsT	p.Glu746ValfsTer10	p.E746Vfs*10	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCTCcg/gTcg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0085489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	373	157	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207077	1207077	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	670	292	0	ENST00000326873.7:c.169del	p.Glu57LysfsTer7	p.E57Kfs*7	ENST00000326873	NM_000455.4	55	ctG/ct																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227000	53227000	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0085489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			45	197	97	0	ENST00000375401.3:c.2575C>T	p.Gln859Ter	p.Q859*	ENST00000375401	NM_004187.3	859	Cag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112209	115112209	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	395	340	0	ENST00000257566.3:c.1531C>A	p.Gln511Lys	p.Q511K	ENST00000257566	NM_016569.3	511	Cag/Aag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597400	10597401	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0085489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			91	424	261	0	ENST00000171111.5:c.1802_1803delinsTT	p.Arg601Leu	p.R601L	ENST00000171111	NM_203500.1	601	cGG/cTT																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38943063	38943063	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0085489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	141	129	0	ENST00000357387.3:c.4924A>T	p.Lys1642Ter	p.K1642*	ENST00000357387	NM_152756.3	1642	Aag/Tag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89833550	89833550	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0085489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	335	221	0	ENST00000389301.3:c.2600A>T	p.Lys867Met	p.K867M	ENST00000389301	NM_000135.2	867	aAg/aTg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557777	21557777	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	474	308	0	ENST00000382592.4:c.2068A>T	p.Thr690Ser	p.T690S	ENST00000382592	NM_014572.2	690	Act/Tct																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864403	162864403	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	220	252	0	ENST00000366898.1:c.110C>A	p.Pro37Gln	p.P37Q	ENST00000366898	NM_004562.2	37	cCg/cAg																																																																															
ATM	472	MSKCC	GRCh37	11	108205714	108205714	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			54	336	181	0	ENST00000278616.4:c.8029T>C	p.Tyr2677His	p.Y2677H	ENST00000278616	NM_000051.3	2677	Tat/Cat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8492954	8492954	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			71	341	167	0	ENST00000356435.5:c.2375C>A	p.Pro792His	p.P792H	ENST00000356435		792	cCt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0085490-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	497	310	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TERT	7015	MSKCC	GRCh37	5	1294529	1294530	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0085490-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1377	104	390	0	ENST00000310581.5:c.471_472del	p.Phe159CysfsTer32	p.F159Cfs*32	ENST00000310581	NM_198253.2	157	gcGCtc/gctc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106519986	106519986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085490-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	53	243	0	ENST00000359195.3:c.2414C>T	p.Ala805Val	p.A805V	ENST00000359195	NM_002649.2	805	gCc/gTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55270231	55270231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085490-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1149	65	397	0	ENST00000275493.2:c.3184G>A	p.Glu1062Lys	p.E1062K	ENST00000275493	NM_005228.3	1062	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0085492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	155	443	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0085492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	101	241	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479795	67479795	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs757106110		P-0085492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	279	431	0	ENST00000327367.4:c.1102C>T	p.Arg368Ter	p.R368*	ENST00000327367	NM_005902.3	368	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0085492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	71	309	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0085492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	114	307	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852217		P-0085492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	157	216	0	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178941917	178941917	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	106	275	0	ENST00000263967.3:c.2236G>T	p.Asp746Tyr	p.D746Y	ENST00000263967	NM_006218.2	746	Gat/Tat																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45371848	45371849	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0085492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	131	300	0	ENST00000262160.6:c.1142dup	p.Asn381LysfsTer19	p.N381Kfs*19	ENST00000262160	NM_005901.5	381	aat/aaAt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117698	70117699	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGAC			P-0085492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	169	438	0	ENST00000245479.2:c.170_171insCGCGA	p.Glu57AspfsTer6	p.E57Dfs*6	ENST00000245479	NM_000346.3	56	ggc/gGCGACgc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098954	178098954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	33	157	0	ENST00000397062.3:c.91G>A	p.Gly31Arg	p.G31R	ENST00000397062	NM_006164.4	31	Gga/Aga																																																																															
MET	4233	MSKCC	GRCh37	7	116339864	116339864	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	48	204	0	ENST00000397752.3:c.726A>T	p.Arg242Ser	p.R242S	ENST00000397752	NM_000245.2	242	agA/agT																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78796930	78796930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	70	223	0	ENST00000306801.3:c.1043G>A	p.Arg348Gln	p.R348Q	ENST00000306801	NM_020761.2	348	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0085493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	51	172	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422637	47422637	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	34	259	0	ENST00000404338.3:c.705C>A	p.Asn235Lys	p.N235K	ENST00000404338	NM_004491.4	235	aaC/aaA																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134335	41134335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	64	276	0	ENST00000379561.5:c.1293G>T	p.Met431Ile	p.M431I	ENST00000379561	NM_002015.3	431	atG/atT																																																																															
STK11	6794	MSKCC	GRCh37	19	1221294	1221295	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCATC			P-0085493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	94	299	0	ENST00000326873.7:c.820_824dup	p.Gly276SerfsTer13	p.G276Sfs*13	ENST00000326873	NM_000455.4	273	gcc/gCCATCcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0085495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	172	464	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0085495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	57	225	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222708	5222708	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370399999		P-0085495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	78	272	0	ENST00000357368.4:c.3095G>A	p.Arg1032Gln	p.R1032Q	ENST00000357368	NM_002850.3	1032	cGg/cAg																																																																															
AR	367	MSKCC	GRCh37	X	66863124	66863124	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	132	209	0	ENST00000374690.3:c.1643T>C	p.Leu548Ser	p.L548S	ENST00000374690	NM_000044.3	548	tTg/tCg																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0085496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	98	238	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs794727798		P-0085496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	121	296	0	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175223	112175223	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0085496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	54	320	0	ENST00000257430.4:c.3933del	p.Ile1311MetfsTer10	p.I1311Mfs*10	ENST00000257430	NM_000038.5	1311	aTt/at																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347780	347780	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs754357905		P-0085496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	136	297	0	ENST00000262320.3:c.1726C>T	p.Arg576Ter	p.R576*	ENST00000262320	NM_003502.3	576	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29553492	29553492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs768638173		P-0085496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	100	290	0	ENST00000358273.4:c.2041C>T	p.Arg681Ter	p.R681*	ENST00000358273	NM_001042492.2	681	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578459	7578460	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGC			P-0085496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			789	99	362	0	ENST00000269305.4:c.432_470dup	p.Leu145_Val157dup	p.L145_V157dup	ENST00000269305	NM_001126112.2	145	gtc/gtGCTGTGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTc																																																																															
KDR	3791	MSKCC	GRCh37	4	55962480	55962480	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	153	245	0	ENST00000263923.4:c.2644C>G	p.Leu882Val	p.L882V	ENST00000263923	NM_002253.2	882	Ctc/Gtc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870953	12870953	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0085497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	223	357	0	ENST00000228872.4:c.180G>A	p.Trp60Ter	p.W60*	ENST00000228872	NM_004064.3	60	tgG/tgA																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577296	64577296	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0085497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	225	422	0	ENST00000337652.1:c.286C>T	p.Gln96Ter	p.Q96*	ENST00000337652	NM_130803.2	96	Cag/Tag																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46268726	46268726	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	224	366	0	ENST00000371998.3:c.3011C>G	p.Ser1004Cys	p.S1004C	ENST00000371998		1004	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0085498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	396	455	3	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
WT1	7490	MSKCC	GRCh37	11	32413538	32413538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	102	307	0	ENST00000332351.3:c.1412G>A	p.Arg471Lys	p.R471K	ENST00000332351	NM_024426.4	471	aGg/aAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578507	7578507	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	270	523	0	ENST00000269305.4:c.423C>A	p.Cys141Ter	p.C141*	ENST00000269305	NM_001126112.2	141	tgC/tgA																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231337	46231337	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	242	400	0	ENST00000334344.6:c.1177G>T	p.Glu393Ter	p.E393*	ENST00000334344	NM_152641.2	393	Gaa/Taa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941511	71941511	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0085617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	319	508	0	ENST00000298229.2:c.1197+1del		p.R399fs	ENST00000298229	NM_001567.3	399	cGg/cg																																																																															
CCND2	894	MSKCC	GRCh37	12	4385291	4385291	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	153	466	0	ENST00000261254.3:c.316A>T	p.Met106Leu	p.M106L	ENST00000261254	NM_001759.3	106	Atg/Ttg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18650638	18650638	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	102	347	0	ENST00000266497.5:c.2849T>A	p.Met950Lys	p.M950K	ENST00000266497		950	aTg/aAg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47425035	47425039	+	frameshift_variant	Frame_Shift_Del	DEL	AACAA	AACAA	-			P-0085617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	288	536	0	ENST00000404338.3:c.3104_3108del	p.Asn1035SerfsTer14	p.N1035Sfs*14	ENST00000404338	NM_004491.4	1035	AACAAa/a																																																																															
ALK	238	MSKCC	GRCh37	2	30143359	30143359	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	20	367	0	ENST00000389048.3:c.167T>G	p.Val56Gly	p.V56G	ENST00000389048	NM_004304.4	56	gTt/gGt																																																																															
RET	5979	MSKCC	GRCh37	10	43572709	43572709	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0085617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	69	301	0	ENST00000355710.3:c.3G>A	p.Met1?	p.M1?	ENST00000355710	NM_020975.4	1	atG/atA																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117428	115117428	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	246	400	0	ENST00000257566.3:c.746A>T	p.Gln249Leu	p.Q249L	ENST00000257566	NM_016569.3	249	cAg/cTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29653083	29653415	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGCGGCTGCTGACTGGCCTCAAAGGTAGCAAAAGGCTTGTTTTCATAGACTGTCCTGGGAAACTGGCTGAGCACATAGAGCATGAACAACAGAAACTACCTGCTGCCACCTTGGCTTTAGAAGAGGACCTGAAGGTATTCCACAATGCTCTCAAGCTAGCTCACAAAGACACCAAAGTTTCTATTAAAGTAAGTTCCAGTCTGTGTTTTGTAAACGATTCATTGCTTTTCTTGACTAACTAGACTATATCCTGGCCTCCCTAGGTGTCCTACCCCTATAGTGGTGTATAAAATGTCACGTAAGGCTGTCGCGGTGGCTCACGCCTGTAATCCA	AGCGGCTGCTGACTGGCCTCAAAGGTAGCAAAAGGCTTGTTTTCATAGACTGTCCTGGGAAACTGGCTGAGCACATAGAGCATGAACAACAGAAACTACCTGCTGCCACCTTGGCTTTAGAAGAGGACCTGAAGGTATTCCACAATGCTCTCAAGCTAGCTCACAAAGACACCAAAGTTTCTATTAAAGTAAGTTCCAGTCTGTGTTTTGTAAACGATTCATTGCTTTTCTTGACTAACTAGACTATATCCTGGCCTCCCTAGGTGTCCTACCCCTATAGTGGTGTATAAAATGTCACGTAAGGCTGTCGCGGTGGCTCACGCCTGTAATCCA	-			P-0085617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			728	122	476	0	ENST00000358273.4:c.5084_5268+148del		p.X1695_splice	ENST00000358273	NM_001042492.2	1695																																																																																
KDR	3791	MSKCC	GRCh37	4	55960975	55960975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	51	298	0	ENST00000263923.4:c.2965G>A	p.Glu989Lys	p.E989K	ENST00000263923	NM_002253.2	989	Gag/Aag																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150923080	150923080	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			983	186	383	0	ENST00000271640.5:c.1727A>G	p.His576Arg	p.H576R	ENST00000271640	NM_001145415.1	576	cAt/cGt																																																																															
PARP1	142	MSKCC	GRCh37	1	226564979	226564979	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752905479		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			991	183	364	0	ENST00000366794.5:c.1771C>T	p.Arg591Cys	p.R591C	ENST00000366794	NM_001618.3	591	Cgt/Tgt																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230493045	230493045	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1053	189	351	2	ENST00000525115.1:c.147del	p.Ser50AlafsTer44	p.S50Afs*44	ENST00000525115		49	ccC/cc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716229	243716229	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	102	280	0	ENST00000263826.5:c.965A>G	p.Asp322Gly	p.D322G	ENST00000263826	NM_005465.4	322	gAc/gGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023559	27023560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	85	313	0	ENST00000324856.7:c.671dup	p.Pro225AlafsTer175	p.P225Afs*175	ENST00000324856	NM_006015.4	222	tac/taCc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	219	434	0	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
TET1	80312	MSKCC	GRCh37	10	70451194	70451194	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1202179982		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	235	414	0	ENST00000373644.4:c.6034G>A	p.Ala2012Thr	p.A2012T	ENST00000373644	NM_030625.2	2012	Gca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428610	49428610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	216	451	0	ENST00000301067.7:c.10340C>T	p.Ala3447Val	p.A3447V	ENST00000301067	NM_003482.3	3447	gCa/gTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438262	49438262	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	160	391	0	ENST00000301067.7:c.5007del	p.Val1670SerfsTer52	p.V1670Sfs*52	ENST00000301067	NM_003482.3	1669	ccC/cc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482369	56482369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	162	394	0	ENST00000267101.3:c.917C>T	p.Pro306Leu	p.P306L	ENST00000267101	NM_001982.3	306	cCt/cTt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56488226	56488226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	201	323	0	ENST00000267101.3:c.1745G>A	p.Gly582Glu	p.G582E	ENST00000267101	NM_001982.3	582	gGg/gAg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103519135	103519135	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1372499985		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	150	312	0	ENST00000355739.4:c.2478del	p.Phe826LeufsTer7	p.F826Lfs*7	ENST00000355739	NM_000123.3	825	Ttt/tt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562307	21562307	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs532409148		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	170	405	0	ENST00000382592.4:c.1612G>A	p.Ala538Thr	p.A538T	ENST00000382592	NM_014572.2	538	Gca/Aca																																																																															
FLT1	2321	MSKCC	GRCh37	13	28897046	28897047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	126	337	0	ENST00000282397.4:c.2833dup	p.Met945AsnfsTer15	p.M945Nfs*15	ENST00000282397	NM_002019.4	945	atg/aAtg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912346	32912346	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs80359406		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	162	333	0	ENST00000380152.3:c.3860del	p.Asn1287IlefsTer6	p.N1287Ifs*6	ENST00000380152		1285	gAa/ga																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43700201	43700201	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	145	339	0	ENST00000382044.4:c.5686A>C	p.Ile1896Leu	p.I1896L	ENST00000382044	NM_001141980.1	1896	Atc/Ctc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813746	50813746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	173	344	0	ENST00000398568.2:c.1300C>T	p.Pro434Ser	p.P434S	ENST00000398568	NM_001042412.1	434	Cca/Tca																																																																															
CBFB	865	MSKCC	GRCh37	16	67063359	67063359	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	131	259	0	ENST00000412916.2:c.54del	p.Phe18LeufsTer4	p.F18Lfs*4	ENST00000412916		17	Ttt/tt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67646013	67646014	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-	rs1470210640		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	158	308	1	ENST00000264010.4:c.950_951del	p.Thr317ArgfsTer91	p.T317Rfs*91	ENST00000264010	NM_006565.3	314	aAC/a																																																																															
CTCF	10664	MSKCC	GRCh37	16	67655481	67655481	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs34679888		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	177	324	0	ENST00000264010.4:c.1348del	p.Ser450ValfsTer61	p.S450Vfs*61	ENST00000264010	NM_006565.3	448	cgA/cg																																																																															
NF1	4763	MSKCC	GRCh37	17	29586149	29586149	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	111	259	0	ENST00000358273.4:c.4430+2T>C		p.X1477_splice	ENST00000358273	NM_001042492.2	1477																																																																																
RNF43	54894	MSKCC	GRCh37	17	56435443	56435443	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	229	446	0	ENST00000407977.2:c.1694A>G	p.His565Arg	p.H565R	ENST00000407977		565	cAt/cGt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78796099	78796099	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	150	333	0	ENST00000306801.3:c.991+1del		p.R330fs	ENST00000306801	NM_020761.2	330	cGg/cg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78867596	78867596	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	174	415	0	ENST00000306801.3:c.2332A>G	p.Ile778Val	p.I778V	ENST00000306801	NM_020761.2	778	Atc/Gtc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600032	10600032	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	218	400	0	ENST00000171111.5:c.1544T>C	p.Leu515Pro	p.L515P	ENST00000171111	NM_203500.1	515	cTg/cCg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612359	1612359	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1341689226		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	197	398	1	ENST00000344749.5:c.1660C>T	p.Arg554Trp	p.R554W	ENST00000344749	NM_001136139.2	554	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224554	36224554	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751409145		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	210	398	0	ENST00000222270.7:c.7016G>A	p.Arg2339Gln	p.R2339Q	ENST00000222270	NM_014727.1	2339	cGg/cAg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753384	42753385	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	211	454	0	ENST00000222329.4:c.879dup	p.Pro294AlafsTer15	p.P294Afs*15	ENST00000222329	NM_006494.2	293	-/G																																																																															
CIC	23152	MSKCC	GRCh37	19	42798217	42798217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	182	406	0	ENST00000575354.2:c.4171C>T	p.Arg1391Cys	p.R1391C	ENST00000575354	NM_015125.3	1391	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210769	5210769	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770699501		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	169	426	0	ENST00000357368.4:c.5282C>T	p.Thr1761Met	p.T1761M	ENST00000357368	NM_002850.3	1761	aCg/aTg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715979	52715979	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786205227		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	383	326	0	ENST00000322088.6:c.544C>T	p.Arg182Trp	p.R182W	ENST00000322088	NM_014225.5	182	Cgg/Tgg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267481	198267481	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs769888451		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	193	370	0	ENST00000335508.6:c.1876A>G	p.Asn626Asp	p.N626D	ENST00000335508	NM_012433.2	626	Aac/Gac																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661663	227661664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761880048		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	133	360	8	ENST00000305123.5:c.1791dup	p.His598AlafsTer13	p.H598Afs*13	ENST00000305123	NM_005544.2	597	-/G																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279870	29279870	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	42	118	0	ENST00000544604.2:c.116T>C	p.Leu39Pro	p.L39P	ENST00000544604	NM_001206998.1	39	cTg/cCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519925		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	174	333	0	ENST00000263967.3:c.1357G>C	p.Glu453Gln	p.E453Q	ENST00000263967	NM_006218.2	453	Gaa/Caa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	154	345	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332463	153332463	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	194	336	0	ENST00000281708.4:c.493del	p.Thr165GlnfsTer4	p.T165Qfs*4	ENST00000281708	NM_033632.3	165	Aca/ca																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs758740142		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	139	273	4	ENST00000265335.6:c.2801del	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183340	56183340	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1358646708		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	179	313	0	ENST00000399503.3:c.4250C>T	p.Ala1417Val	p.A1417V	ENST00000399503	NM_005921.1	1417	gCa/gTa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099579	157099579	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	117	240	0	ENST00000346085.5:c.521del	p.Pro174ArgfsTer6	p.P174Rfs*6	ENST00000346085	NM_020732.3	172	gaC/ga																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323262	31323262	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77665001		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	143	370	0	ENST00000412585.2:c.727C>T	p.Arg243Trp	p.R243W	ENST00000412585	NM_005514.6	243	Cgg/Tgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178669	32178669	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766521222		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	175	334	0	ENST00000375023.3:c.2725G>A	p.Asp909Asn	p.D909N	ENST00000375023	NM_004557.3	909	Gac/Aac																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188404	32188404	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763926116		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			761	197	457	0	ENST00000375023.3:c.937G>A	p.Glu313Lys	p.E313K	ENST00000375023	NM_004557.3	313	Gaa/Aaa																																																																															
POT1	25913	MSKCC	GRCh37	7	124465309	124465309	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	81	233	0	ENST00000357628.3:c.1789A>G	p.Ile597Val	p.I597V	ENST00000357628	NM_015450.2	597	Att/Gtt																																																																															
SMO	6608	MSKCC	GRCh37	7	128829039	128829040	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs570242755		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	57	219	0	ENST00000249373.3:c.67_69dup	p.Leu23dup	p.L23dup	ENST00000249373	NM_005631.4	23	ggg/ggGCTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221800	55221800	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199796955		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	238	485	0	ENST00000275493.2:c.844G>A	p.Glu282Lys	p.E282K	ENST00000275493	NM_005228.3	282	Gag/Aag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742857	145742857	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1331238003		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	129	309	0	ENST00000428558.2:c.154A>G	p.Thr52Ala	p.T52A	ENST00000428558	NM_004260.3	52	Acg/Gcg																																																																															
NBN	4683	MSKCC	GRCh37	8	90993640	90993640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	146	257	0	ENST00000265433.3:c.283del	p.Asp95MetfsTer14	p.D95Mfs*14	ENST00000265433	NM_002485.4	95	Gat/at																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390794	139390794	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	210	450	0	ENST00000277541.6:c.7397del	p.Thr2466SerfsTer11	p.T2466Sfs*11	ENST00000277541	NM_017617.3	2466	aCg/ag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399366	139399366	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	181	388	0	ENST00000277541.6:c.4777C>A	p.Leu1593Met	p.L1593M	ENST00000277541	NM_017617.3	1593	Ctg/Atg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399422	139399422	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	202	385	1	ENST00000277541.6:c.4721T>C	p.Leu1574Pro	p.L1574P	ENST00000277541	NM_017617.3	1574	cTg/cCg																																																																															
MED12	9968	MSKCC	GRCh37	X	70349002	70349002	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	194	408	0	ENST00000374080.3:c.3514A>G	p.Thr1172Ala	p.T1172A	ENST00000374080		1172	Acc/Gcc																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150915053	150915053	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			899	154	291	0	ENST00000271640.5:c.562A>G	p.Met188Val	p.M188V	ENST00000271640	NM_001145415.1	188	Atg/Gtg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150933404	150933404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			956	171	344	0	ENST00000271640.5:c.2866C>T	p.His956Tyr	p.H956Y	ENST00000271640	NM_001145415.1	956	Cat/Tat																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936180	150936180	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1172	185	382	0	ENST00000271640.5:c.3632A>G	p.Asp1211Gly	p.D1211G	ENST00000271640	NM_001145415.1	1211	gAt/gGt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845914	156845914	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1336	195	440	0	ENST00000524377.1:c.1544A>G	p.Glu515Gly	p.E515G	ENST00000524377	NM_002529.3	515	gAg/gGg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175958535	175958535	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	173	287	0	ENST00000367669.3:c.1810T>C	p.Tyr604His	p.Y604H	ENST00000367669	NM_022457.5	604	Tat/Cat																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176104209	176104209	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	106	242	0	ENST00000367669.3:c.905T>C	p.Leu302Ser	p.L302S	ENST00000367669	NM_022457.5	302	tTa/tCa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176176114	176176114	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	111	284	0	ENST00000367669.3:c.1A>G	p.Met1?	p.M1?	ENST00000367669	NM_022457.5	1	Atg/Gtg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193117021	193117021	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			861	72	268	0	ENST00000367435.3:c.754A>C	p.Ile252Leu	p.I252L	ENST00000367435	NM_024529.4	252	Att/Ctt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982140	201982140	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1131	200	382	0	ENST00000359651.3:c.664A>G	p.Thr222Ala	p.T222A	ENST00000359651		222	Act/Gct																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206648241	206648241	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1026	196	388	0	ENST00000367120.3:c.262T>C	p.Tyr88His	p.Y88H	ENST00000367120	NM_014002.3	88	Tac/Cac																																																																															
CDC42	998	MSKCC	GRCh37	1	22405078	22405078	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	107	233	0	ENST00000344548.3:c.105+2T>C		p.X35_splice	ENST00000344548	NM_001039802.1	35																																																																																
PGBD5	79605	MSKCC	GRCh37	1	230561647	230561647	+	upstream_gene_variant	5'Flank	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	47	132	0				ENST00000391860	NM_001258311.1																																																																																	
FH	2271	MSKCC	GRCh37	1	241682917	241682917	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	147	267	0	ENST00000366560.3:c.106T>C	p.Phe36Leu	p.F36L	ENST00000366560	NM_000143.3	36	Ttt/Ctt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101343	27101343	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	82	415	0	ENST00000324856.7:c.4625A>G	p.Glu1542Gly	p.E1542G	ENST00000324856	NM_006015.4	1542	gAa/gGa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63661933	63661933	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	211	376	0	ENST00000279873.7:c.37T>A	p.Cys13Ser	p.C13S	ENST00000279873	NM_032199.2	13	Tgt/Agt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851258	63851258	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	206	418	0	ENST00000279873.7:c.2036A>G	p.Tyr679Cys	p.Y679C	ENST00000279873	NM_032199.2	679	tAc/tGc																																																																															
PGR	5241	MSKCC	GRCh37	11	100933444	100933444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	141	277	0	ENST00000325455.5:c.1946G>A	p.Arg649Lys	p.R649K	ENST00000325455	NM_001202474.3	649	aGa/aAa																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125499326	125499326	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	149	336	0	ENST00000428830.2:c.395A>G	p.Lys132Arg	p.K132R	ENST00000428830	NM_001114121.2	132	aAa/aGa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137042	64137042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	183	355	0	ENST00000334205.4:c.1553G>A	p.Ser518Asn	p.S518N	ENST00000334205	NM_003942.2	518	aGc/aAc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588193	69588193	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	176	336	0	ENST00000168712.1:c.505T>C	p.Tyr169His	p.Y169H	ENST00000168712	NM_002007.2	169	Tac/Cac																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94179006	94179006	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	53	241	0	ENST00000323929.3:c.1837T>C	p.Ser613Pro	p.S613P	ENST00000323929	NM_005591.3	613	Tca/Cca																																																																															
POLE	5426	MSKCC	GRCh37	12	133210810	133210810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	157	386	0	ENST00000320574.5:c.5966C>T	p.Ala1989Val	p.A1989V	ENST00000320574	NM_006231.2	1989	gCa/gTa																																																																															
POLE	5426	MSKCC	GRCh37	12	133249235	133249235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	163	384	0	ENST00000320574.5:c.1664A>G	p.Asp555Gly	p.D555G	ENST00000320574	NM_006231.2	555	gAt/gGt																																																																															
POLE	5426	MSKCC	GRCh37	12	133253148	133253148	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	157	339	0	ENST00000320574.5:c.893A>G	p.Tyr298Cys	p.Y298C	ENST00000320574	NM_006231.2	298	tAc/tGc																																																																															
POLE	5426	MSKCC	GRCh37	12	133256131	133256131	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	154	369	0	ENST00000320574.5:c.530A>G	p.Asn177Ser	p.N177S	ENST00000320574	NM_006231.2	177	aAc/aGc																																																																															
POLE	5426	MSKCC	GRCh37	12	133256804	133256804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	186	285	0	ENST00000320574.5:c.290C>T	p.Ala97Val	p.A97V	ENST00000320574	NM_006231.2	97	gCt/gTt																																																																															
CCND2	894	MSKCC	GRCh37	12	4398010	4398010	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	147	278	0	ENST00000261254.3:c.574T>C	p.Phe192Leu	p.F192L	ENST00000261254	NM_001759.3	192	Ttt/Ctt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46205227	46205227	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	154	273	0	ENST00000334344.6:c.311A>G	p.His104Arg	p.H104R	ENST00000334344	NM_152641.2	104	cAt/cGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445344	49445344	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			699	239	580	0	ENST00000301067.7:c.2122T>C	p.Ser708Pro	p.S708P	ENST00000301067	NM_003482.3	708	Tcc/Ccc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478920	56478920	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	178	329	0	ENST00000267101.3:c.376A>T	p.Asn126Tyr	p.N126Y	ENST00000267101	NM_001982.3	126	Aac/Tac																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434862	110434862	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	189	437	0	ENST00000375856.3:c.3539T>C	p.Val1180Ala	p.V1180A	ENST00000375856	NM_003749.2	1180	gTc/gCc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436783	110436783	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	161	385	0	ENST00000375856.3:c.1618T>G	p.Tyr540Asp	p.Y540D	ENST00000375856	NM_003749.2	540	Tac/Gac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32893436	32893436	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	53	310	0	ENST00000380152.3:c.290A>G	p.Glu97Gly	p.E97G	ENST00000380152		97	gAa/gGa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900249	32900249	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs539929888		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	119	284	0	ENST00000380152.3:c.437T>C	p.Leu146Pro	p.L146P	ENST00000380152		146	cTa/cCa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910633	32910633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	195	380	0	ENST00000380152.3:c.2141A>G	p.Glu714Gly	p.E714G	ENST00000380152		714	gAa/gGa																																																																															
AKT1	207	MSKCC	GRCh37	14	105241426	105241426	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	199	411	0	ENST00000349310.3:c.554T>A	p.Val185Asp	p.V185D	ENST00000349310	NM_001014432.1	185	gTc/gAc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061364	38061364	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	146	353	0	ENST00000250448.2:c.625C>T	p.Gln209Ter	p.Q209*	ENST00000250448	NM_004496.3	209	Cag/Tag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061419	38061419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	150	361	0	ENST00000250448.2:c.570G>A	p.Met190Ile	p.M190I	ENST00000250448	NM_004496.3	190	atG/atA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061492	38061492	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	151	366	0	ENST00000250448.2:c.497A>G	p.Tyr166Cys	p.Y166C	ENST00000250448	NM_004496.3	166	tAc/tGc																																																																															
MGA	23269	MSKCC	GRCh37	15	41961432	41961432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	184	367	0	ENST00000219905.7:c.340G>A	p.Gly114Ser	p.G114S	ENST00000219905	NM_001164273.1	114	Ggt/Agt																																																																															
MGA	23269	MSKCC	GRCh37	15	42003207	42003207	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	207	441	0	ENST00000219905.7:c.2744A>G	p.Tyr915Cys	p.Y915C	ENST00000219905	NM_001164273.1	915	tAt/tGt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646978	23646978	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	215	413	0	ENST00000261584.4:c.889A>G	p.Thr297Ala	p.T297A	ENST00000261584	NM_024675.3	297	Act/Gct																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647926	3647926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	174	374	0	ENST00000294008.3:c.1238T>C	p.Val413Ala	p.V413A	ENST00000294008	NM_032444.2	413	gTg/gCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821106	72821106	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	152	320	0	ENST00000268489.5:c.11069A>G	p.Asp3690Gly	p.D3690G	ENST00000268489	NM_006885.3	3690	gAc/gGc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821706	72821706	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	97	320	0	ENST00000268489.5:c.10469T>C	p.Phe3490Ser	p.F3490S	ENST00000268489	NM_006885.3	3490	tTc/tCc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346739	89346739	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	169	411	0	ENST00000301030.4:c.6211T>C	p.Ser2071Pro	p.S2071P	ENST00000301030	NM_001256183.1	2071	Tca/Cca																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89354961	89354961	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	168	397	0	ENST00000301030.4:c.719A>G	p.Asp240Gly	p.D240G	ENST00000301030	NM_001256183.1	240	gAc/gGc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357051	89357051	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	206	381	0	ENST00000301030.4:c.583A>G	p.Asn195Asp	p.N195D	ENST00000301030	NM_001256183.1	195	Aac/Gac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858139	9858139	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	199	376	0	ENST00000330684.3:c.3262A>G	p.Arg1088Gly	p.R1088G	ENST00000330684	NM_001134407.1	1088	Agg/Ggg																																																																															
NF1	4763	MSKCC	GRCh37	17	29556466	29556466	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	223	312	0	ENST00000358273.4:c.2833T>A	p.Phe945Ile	p.F945I	ENST00000358273	NM_001042492.2	945	Ttt/Att																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38787094	38787094	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	181	371	0	ENST00000348513.6:c.899A>C	p.Gln300Pro	p.Q300P	ENST00000348513	NM_003079.4	300	cAg/cCg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40462605	40462605	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	202	357	0	ENST00000345506.4:c.2303T>G	p.Leu768Ter	p.L768*	ENST00000345506	NM_003152.3	768	tTa/tGa																																																																															
STAT3	6774	MSKCC	GRCh37	17	40478204	40478204	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	98	207	0	ENST00000264657.5:c.1295T>C	p.Val432Ala	p.V432A	ENST00000264657	NM_139276.2	432	gTg/gCg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246197	41246197	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	164	358	1	ENST00000357654.3:c.1351T>C	p.Ser451Pro	p.S451P	ENST00000357654	NM_007294.3	451	Tca/Cca																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78938095	78938095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	35	360	0	ENST00000306801.3:c.3973A>G	p.Ile1325Val	p.I1325V	ENST00000306801	NM_020761.2	1325	Atc/Gtc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7990622	7990622	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	88	166	0	ENST00000319144.4:c.139A>G	p.Thr47Ala	p.T47A	ENST00000319144	NM_001139.2	47	Act/Gct																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575216	48575216	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	143	238	0	ENST00000342988.3:c.410T>C	p.Val137Ala	p.V137A	ENST00000342988	NM_005359.5	137	gTa/gCa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603059	48603059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	168	295	2	ENST00000342988.3:c.1360G>A	p.Ala454Thr	p.A454T	ENST00000342988	NM_005359.5	454	Gca/Aca																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61328333	61328333	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	131	237	0	ENST00000283752.5:c.118A>G	p.Met40Val	p.M40V	ENST00000283752	NM_006919.2	40	Atg/Gtg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250737	10250737	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	168	354	0	ENST00000340748.4:c.3743T>C	p.Val1248Ala	p.V1248A	ENST00000340748		1248	gTg/gCg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130339	11130339	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	168	369	0	ENST00000344626.4:c.2578T>A	p.Tyr860Asn	p.Y860N	ENST00000344626	NM_003072.3	860	Tac/Aac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144086	11144086	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	183	392	0	ENST00000344626.4:c.3667A>G	p.Asn1223Asp	p.N1223D	ENST00000344626	NM_003072.3	1223	Aac/Gac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292497	15292497	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	211	388	0	ENST00000263388.2:c.2682C>G	p.Asn894Lys	p.N894K	ENST00000263388	NM_000435.2	894	aaC/aaG																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350749	15350749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	164	367	0	ENST00000263377.2:c.3254C>T	p.Pro1085Leu	p.P1085L	ENST00000263377	NM_058243.2	1085	cCc/cTc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354073	15354073	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	106	268	0	ENST00000263377.2:c.2807A>G	p.Gln936Arg	p.Q936R	ENST00000263377	NM_058243.2	936	cAg/cGg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15383730	15383730	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	198	413	0	ENST00000263377.2:c.181A>G	p.Asn61Asp	p.N61D	ENST00000263377	NM_058243.2	61	Aac/Gac																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953156	17953156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	158	355	0	ENST00000458235.1:c.830G>A	p.Gly277Asp	p.G277D	ENST00000458235	NM_000215.3	277	gGc/gAc																																																																															
ERF	2077	MSKCC	GRCh37	19	42752966	42752966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	196	437	0	ENST00000222329.4:c.1298G>A	p.Gly433Asp	p.G433D	ENST00000222329	NM_006494.2	433	gGc/gAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5215567	5215567	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373247829		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	194	361	0	ENST00000357368.4:c.4136C>T	p.Ala1379Val	p.A1379V	ENST00000357368	NM_002850.3	1379	gCg/gTg																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6270653	6270653	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			705	41	384	0	ENST00000252674.7:c.130A>G	p.Ile44Val	p.I44V	ENST00000252674	NM_005934.3	44	Atc/Gtc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812289	212812289	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	158	331	0	ENST00000342788.4:c.287A>G	p.Tyr96Cys	p.Y96C	ENST00000342788	NM_005235.2	96	tAc/tGc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989532	212989532	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	137	319	0	ENST00000342788.4:c.179T>C	p.Met60Thr	p.M60T	ENST00000342788	NM_005235.2	60	aTg/aCg																																																																															
BARD1	580	MSKCC	GRCh37	2	215645589	215645589	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	178	389	0	ENST00000260947.4:c.1009A>G	p.Arg337Gly	p.R337G	ENST00000260947	NM_000465.2	337	Aga/Gga																																																																															
CUL3	8452	MSKCC	GRCh37	2	225379389	225379389	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	124	317	0	ENST00000264414.4:c.479A>T	p.His160Leu	p.H160L	ENST00000264414	NM_003590.4	160	cAt/cTt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26101077	26101081	+	frameshift_variant	Frame_Shift_Del	DEL	TCCCT	TCCCT	CCCC			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	114	292	1	ENST00000435504.4:c.11_15delinsGGGG	p.Lys4ArgfsTer18	p.K4Rfs*18	ENST00000435504		4	aAGGGA/aGGGG																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213033	39213033	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	221	401	0	ENST00000402219.2:c.3934A>G	p.Arg1312Gly	p.R1312G	ENST00000402219	NM_005633.3	1312	Agg/Ggg																																																																															
REL	5966	MSKCC	GRCh37	2	61149608	61149608	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	179	362	1	ENST00000295025.8:c.1798A>G	p.Ile600Val	p.I600V	ENST00000295025	NM_002908.2	600	Att/Gtt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61710210	61710210	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	128	281	0	ENST00000401558.2:c.2694del	p.Phe898LeufsTer33	p.F898Lfs*33	ENST00000401558	NM_003400.3	898	ttT/tt																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631605	67631605	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	138	459	0	ENST00000272342.5:c.1791T>A	p.Asp597Glu	p.D597E	ENST00000272342	NM_019002.3	597	gaT/gaA																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30253757	30253757	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	188	357	0	ENST00000307677.4:c.697A>G	p.Lys233Glu	p.K233E	ENST00000307677	NM_138578.1	233	Aaa/Gaa																																																																															
SRC	6714	MSKCC	GRCh37	20	36012591	36012591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	118	308	0	ENST00000358208.4:c.35G>A	p.Ser12Asn	p.S12N	ENST00000358208		12	aGc/aAc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39709847	39709847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	41	294	0	ENST00000361337.2:c.474G>T	p.Lys158Asn	p.K158N	ENST00000361337	NM_003286.2	158	aaG/aaT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306592	41306592	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	68	353	0	ENST00000373198.4:c.1067A>T	p.Tyr356Phe	p.Y356F	ENST00000373198	NM_133170.3	356	tAt/tTt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46277816	46277816	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	149	343	0	ENST00000371998.3:c.3614T>C	p.Val1205Ala	p.V1205A	ENST00000371998		1205	gTg/gCg																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945539	54945539	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	165	369	0	ENST00000312783.6:c.1029+2T>C		p.X343_splice	ENST00000312783	NM_198436.1	343																																																																																
LZTR1	8216	MSKCC	GRCh37	22	21336757	21336757	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	179	369	0	ENST00000215739.8:c.97A>G	p.Ser33Gly	p.S33G	ENST00000215739	NM_006767.3	33	Agc/Ggc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130634	29130634	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	193	380	0	ENST00000328354.6:c.76A>G	p.Thr26Ala	p.T26A	ENST00000328354	NM_007194.3	26	Acc/Gcc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279920	29279920	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	101	223	0	ENST00000544604.2:c.166A>G	p.Lys56Glu	p.K56E	ENST00000544604	NM_001206998.1	56	Aag/Gag																																																																															
EP300	2033	MSKCC	GRCh37	22	41548319	41548319	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	190	316	0	ENST00000263253.7:c.3107A>G	p.Gln1036Arg	p.Q1036R	ENST00000263253	NM_001429.3	1036	cAg/cGg																																																																															
VHL	7428	MSKCC	GRCh37	3	10188208	10188208	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs727504215		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	37	300	0	ENST00000256474.2:c.351G>A	p.Trp117Ter	p.W117*	ENST00000256474	NM_000551.3	117	tgG/tgA																																																																															
RAF1	5894	MSKCC	GRCh37	3	12632435	12632435	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	193	408	0	ENST00000251849.4:c.1232A>G	p.Tyr411Cys	p.Y411C	ENST00000251849	NM_002880.3	411	tAc/tGc																																																																															
ATR	545	MSKCC	GRCh37	3	142278192	142278192	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	154	333	0	ENST00000350721.4:c.1633A>G	p.Lys545Glu	p.K545E	ENST00000350721	NM_001184.3	545	Aag/Gag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259545	89259545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	124	402	0	ENST00000336596.2:c.689G>A	p.Cys230Tyr	p.C230Y	ENST00000336596	NM_005233.5	230	tGt/tAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509873	187509873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	215	442	0	ENST00000441802.2:c.13640C>T	p.Ser4547Phe	p.S4547F	ENST00000441802	NM_005245.3	4547	tCt/tTt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1962768	1962768	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	162	358	0	ENST00000382895.3:c.3262T>C	p.Phe1088Leu	p.F1088L	ENST00000382895	NM_133330.2	1088	Ttt/Ctt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1978352	1978352	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	206	377	0	ENST00000382895.3:c.3772T>C	p.Phe1258Leu	p.F1258L	ENST00000382895	NM_133330.2	1258	Ttc/Ctc																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84384736	84384736	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	131	205	0	ENST00000321945.7:c.707G>T	p.Ser236Ile	p.S236I	ENST00000321945	NM_139076.2	236	aGt/aTt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512502	149512503	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	163	394	0	ENST00000261799.4:c.937_938del	p.Ser313ArgfsTer16	p.S313Rfs*16	ENST00000261799	NM_002609.3	313	AGc/c																																																																															
NSD1	64324	MSKCC	GRCh37	5	176631147	176631147	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	195	381	0	ENST00000439151.2:c.1090T>C	p.Tyr364His	p.Y364H	ENST00000439151	NM_022455.4	364	Tac/Cac																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637751	176637751	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	178	441	0	ENST00000439151.2:c.2351A>G	p.Gln784Arg	p.Q784R	ENST00000439151	NM_022455.4	784	cAg/cGg																																																																															
SESN1	27244	MSKCC	GRCh37	6	109319912	109319912	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	184	333	0	ENST00000436639.2:c.776T>C	p.Val259Ala	p.V259A	ENST00000436639	NM_014454.2	259	gTa/gCa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117632238	117632238	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	137	265	0	ENST00000368508.3:c.6178T>C	p.Cys2060Arg	p.C2060R	ENST00000368508	NM_002944.2	2060	Tgt/Cgt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001440	150001440	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	161	398	0	ENST00000253339.5:c.2164G>T	p.Ala722Ser	p.A722S	ENST00000253339		722	Gca/Tca																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056281	26056281	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs79208414		P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			715	186	414	0	ENST00000343677.2:c.376A>G	p.Thr126Ala	p.T126A	ENST00000343677	NM_005319.3	126	Acc/Gcc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056431	26056431	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	164	364	0	ENST00000343677.2:c.226A>G	p.Asn76Asp	p.N76D	ENST00000343677	NM_005319.3	76	Aac/Gac																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225470	26225470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			936	237	518	0	ENST00000360408.1:c.88G>A	p.Ala30Thr	p.A30T	ENST00000360408	NM_003532.2	30	Gct/Act																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27840026	27840026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			876	210	502	0	ENST00000328488.2:c.68C>T	p.Thr23Ile	p.T23I	ENST00000328488	NM_003533.2	23	aCc/aTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32181934	32181934	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	157	365	0	ENST00000375023.3:c.2120A>G	p.Tyr707Cys	p.Y707C	ENST00000375023	NM_004557.3	707	tAc/tGc																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43749818	43749818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			794	194	415	0	ENST00000523873.1:c.671C>T	p.Thr224Ile	p.T224I	ENST00000523873		224	aCt/aTt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93953177	93953177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	105	239	0	ENST00000369303.4:c.2964G>A	p.Met988Ile	p.M988I	ENST00000369303	NM_004440.3	988	atG/atA																																																																															
MET	4233	MSKCC	GRCh37	7	116380094	116380094	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	183	338	0	ENST00000397752.3:c.1483A>G	p.Thr495Ala	p.T495A	ENST00000397752	NM_000245.2	495	Aca/Gca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860250	151860250	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	188	463	0	ENST00000262189.6:c.10412A>G	p.Gln3471Arg	p.Q3471R	ENST00000262189	NM_170606.2	3471	cAg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249140	55249140	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	197	370	0	ENST00000275493.2:c.2438A>G	p.Tyr813Cys	p.Y813C	ENST00000275493	NM_005228.3	813	tAc/tGc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739848	145739848	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			727	205	439	0	ENST00000428558.2:c.1682A>C	p.Gln561Pro	p.Q561P	ENST00000428558	NM_004260.3	561	cAa/cCa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741374	145741374	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			803	219	435	0	ENST00000428558.2:c.1129C>T	p.Gln377Ter	p.Q377*	ENST00000428558	NM_004260.3	377	Cag/Tag																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194833	29194833	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	183	404	0	ENST00000240100.2:c.895A>G	p.Lys299Glu	p.K299E	ENST00000240100	NM_001394.6	299	Aaa/Gaa																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29197733	29197733	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	159	342	0	ENST00000240100.2:c.461A>G	p.Tyr154Cys	p.Y154C	ENST00000240100	NM_001394.6	154	tAc/tGc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38287248	38287248	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			709	174	411	0	ENST00000425967.3:c.409A>G	p.Ser137Gly	p.S137G	ENST00000425967	NM_001174067.1	137	Agc/Ggc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372124	55372124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	182	426	0	ENST00000297316.4:c.814C>A	p.Pro272Thr	p.P272T	ENST00000297316	NM_022454.3	272	Ccc/Acc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70971000	70971000	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	186	377	0	ENST00000276594.2:c.1261T>C	p.Tyr421His	p.Y421H	ENST00000276594	NM_024504.3	421	Tac/Cac																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128206845	128206845	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	152	325	0	ENST00000265960.3:c.1378A>G	p.Asn460Asp	p.N460D	ENST00000265960	NM_001006617.1	460	Aat/Gat																																																																															
ABL1	25	MSKCC	GRCh37	9	133760489	133760489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	152	361	0	ENST00000318560.5:c.2812G>T	p.Val938Phe	p.V938F	ENST00000318560	NM_005157.4	938	Gtt/Ttt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390932	139390932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	262	524	0	ENST00000277541.6:c.7259G>A	p.Gly2420Asp	p.G2420D	ENST00000277541	NM_017617.3	2420	gGc/gAc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2186156	2186156	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	179	375	0	ENST00000349721.2:c.4522A>G	p.Lys1508Glu	p.K1508E	ENST00000349721	NM_003070.3	1508	Aaa/Gaa																																																																															
MED12	9968	MSKCC	GRCh37	X	70341586	70341586	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	213	435	0	ENST00000374080.3:c.1021A>G	p.Thr341Ala	p.T341A	ENST00000374080		341	Aca/Gca																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0080774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	19	373	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0085436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	154	543	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	143	481	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0085557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	268	339	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0085557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	239	340	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38178687	38178687	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761714577		P-0085557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	39	182	0	ENST00000317025.8:c.1712C>T	p.Ser571Leu	p.S571L	ENST00000317025	NM_023034.1	571	tCa/tTa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197842	123197842	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0085561-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	36	95	0	ENST00000218089.9:c.1966C>T	p.Gln656Ter	p.Q656*	ENST00000218089	NM_001042749.1	656	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0085562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	71	323	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549403	21549403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765566250		P-0085562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	137	452	0	ENST00000382592.4:c.2873G>A	p.Arg958His	p.R958H	ENST00000382592	NM_014572.2	958	cGc/cAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111503	8111503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			771	76	381	0	ENST00000346208.3:c.989G>T	p.Arg330Met	p.R330M	ENST00000346208		330	aGg/aTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266041	41266672	+	splice_acceptor_variant,splice_donor_variant,stop_lost,protein_altering_variant,intron_variant	Splice_Site	DEL	CCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGTGCAATCCCTGAACTGA	CCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGTGCAATCCCTGAACTGA	-			P-0085562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	44	339	0	ENST00000349496.5:c.39_470del		p.X13_splice	ENST00000349496	NM_001904.3	13	gCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGTGCAATCCCTGAACTGAca/gca																																																																															
AR	367	MSKCC	GRCh37	X	66863108	66863108	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1402718521		P-0085562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	64	362	0	ENST00000374690.3:c.1627G>T	p.Ala543Ser	p.A543S	ENST00000374690	NM_000044.3	543	Gcc/Tcc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2130366	2130366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45438205		P-0085562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	58	457	0	ENST00000219476.3:c.3598C>T	p.Arg1200Trp	p.R1200W	ENST00000219476	NM_000548.3	1200	Cgg/Tgg																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112760236	112760236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	27	310	0	ENST00000369452.4:c.905C>T	p.Ser302Leu	p.S302L	ENST00000369452	NM_007373.3	302	tCa/tTa																																																																															
RET	5979	MSKCC	GRCh37	10	43608310	43608310	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	61	658	0	ENST00000355710.3:c.1658G>T	p.Arg553Met	p.R553M	ENST00000355710	NM_020975.4	553	aGg/aTg																																																																															
PGR	5241	MSKCC	GRCh37	11	100933252	100933252	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	24	362	0	ENST00000325455.5:c.2138C>A	p.Ser713Tyr	p.S713Y	ENST00000325455	NM_001202474.3	713	tCt/tAt																																																																															
WT1	7490	MSKCC	GRCh37	11	32413610	32413610	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	28	349	0	ENST00000332351.3:c.1340G>T	p.Gly447Val	p.G447V	ENST00000332351	NM_024426.4	447	gGt/gTt																																																																															
APLNR	187	MSKCC	GRCh37	11	57004294	57004294	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	A			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	56	459	0	ENST00000257254.3:c.185G>T	p.Arg62Leu	p.R62L	ENST00000257254		62	cGc/cTc																																																																															
CDK4	1019	MSKCC	GRCh37	12	58143020	58143020	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	54	524	0	ENST00000257904.6:c.764G>T	p.Arg255Leu	p.R255L	ENST00000257904	NM_000075.3	255	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			731	62	452	0	ENST00000269305.4:c.920-2A>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602449	10602449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	59	455	0	ENST00000171111.5:c.1129G>A	p.Val377Met	p.V377M	ENST00000171111	NM_203500.1	377	Gtg/Atg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376300	225376300	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	21	295	0	ENST00000264414.4:c.655-1G>A		p.X219_splice	ENST00000264414	NM_003590.4	219																																																																																
DNMT3A	1788	MSKCC	GRCh37	2	25469134	25469134	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	41	429	0	ENST00000264709.3:c.1324G>T	p.Glu442Ter	p.E442*	ENST00000264709	NM_175629.2	442	Gaa/Taa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40709545	40709545	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	30	335	0	ENST00000373198.4:c.4357G>T	p.Ala1453Ser	p.A1453S	ENST00000373198	NM_133170.3	1453	Gca/Tca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733217	40733217	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	40	374	0	ENST00000373198.4:c.3589G>T	p.Glu1197Ter	p.E1197*	ENST00000373198	NM_133170.3	1197	Gaa/Taa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162666	47162666	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	58	332	0	ENST00000409792.3:c.3460G>C	p.Asp1154His	p.D1154H	ENST00000409792	NM_014159.6	1154	Gat/Cat																																																																															
BRAF	673	MSKCC	GRCh37	7	140453149	140453149	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913361		P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	16	398	0	ENST00000288602.6:c.1786G>T	p.Gly596Cys	p.G596C	ENST00000288602	NM_004333.4	596	Ggt/Tgt																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346298	152346298	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776959023		P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	92	455	0	ENST00000359321.1:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000359321	NM_005431.1	91	cGg/cAg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845999	156845999	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	135	502	0	ENST00000524377.1:c.1629del	p.Lys544ArgfsTer3	p.K544Rfs*3	ENST00000524377	NM_002529.3	543	gtC/gt																																																																															
PARP1	142	MSKCC	GRCh37	1	226551773	226551773	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	58	353	0	ENST00000366794.5:c.2659-2A>G		p.X887_splice	ENST00000366794	NM_001618.3	887																																																																																
ID3	3399	MSKCC	GRCh37	1	23885901	23885901	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	39	360	0	ENST00000374561.5:c.17C>G	p.Pro6Arg	p.P6R	ENST00000374561	NM_002167.4	6	cCg/cGg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102207490	102207490	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	28	293	0	ENST00000263464.3:c.1580-1G>T		p.X527_splice	ENST00000263464	NM_001165.4	527																																																																																
FGF3	2248	MSKCC	GRCh37	11	69625141	69625141	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	24	388	0	ENST00000334134.2:c.652G>C	p.Asp218His	p.D218H	ENST00000334134	NM_005247.2	218	Gat/Cat																																																																															
FLT1	2321	MSKCC	GRCh37	13	28903863	28903863	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	76	332	0	ENST00000282397.4:c.2596G>C	p.Gly866Arg	p.G866R	ENST00000282397	NM_002019.4	866	Ggg/Cgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912001	32912001	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	60	423	0	ENST00000380152.3:c.3512del	p.Pro1171HisfsTer6	p.P1171Hfs*6	ENST00000380152		1170	gCc/gc																																																																															
RB1	5925	MSKCC	GRCh37	13	49039399	49039400	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	T			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	100	421	0	ENST00000267163.4:c.2384_2385delinsT	p.Ser795PhefsTer15	p.S795Ffs*15	ENST00000267163	NM_000321.2	795	tCA/tT																																																																															
DICER1	23405	MSKCC	GRCh37	14	95579500	95579500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	22	329	0	ENST00000343455.3:c.1969G>A	p.Glu657Lys	p.E657K	ENST00000343455	NM_177438.2	657	Gag/Aag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88726672	88726672	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	42	342	0	ENST00000360948.2:c.372del	p.Lys125ArgfsTer8	p.K125Rfs*8	ENST00000360948	NM_001012338.2	124	gcC/gc																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86545137	86545137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	45	427	1	ENST00000262426.4:c.962C>A	p.Ala321Asp	p.A321D	ENST00000262426	NM_001451.2	321	gCc/gAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29490280	29490284	+	missense_variant	Missense_Mutation	ONP	ACACC	ACACC	TCACA			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	42	387	0	ENST00000358273.4:c.365_369delinsTCACA	p.His122Leu	p.H122L	ENST00000358273	NM_001042492.2	122	cACACC/cTCACA																																																																															
RARA	5914	MSKCC	GRCh37	17	38487511	38487511	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	62	371	0	ENST00000254066.5:c.41G>T	p.Gly14Val	p.G14V	ENST00000254066	NM_000964.3	14	gGg/gTg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245801	41245801	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	51	385	0	ENST00000357654.3:c.1747A>T	p.Lys583Ter	p.K583*	ENST00000357654	NM_007294.3	583	Aaa/Taa																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804304	46804304	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	37	387	0	ENST00000290295.7:c.703T>A	p.Tyr235Asn	p.Y235N	ENST00000290295	NM_006361.5	235	Tat/Aat																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212289027	212289027	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	17	294	0	ENST00000342788.4:c.2720-1G>T		p.X907_splice	ENST00000342788	NM_005235.2	907																																																																																
INHA	3623	MSKCC	GRCh37	2	220439640	220439640	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	63	495	0	ENST00000243786.2:c.493G>T	p.Val165Leu	p.V165L	ENST00000243786	NM_002191.3	165	Gtg/Ttg																																																																															
ALK	238	MSKCC	GRCh37	2	29940507	29940507	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	25	423	0	ENST00000389048.3:c.724A>G	p.Thr242Ala	p.T242A	ENST00000389048	NM_004304.4	242	Aca/Gca																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920380	134920380	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	47	445	0	ENST00000398015.3:c.2195T>A	p.Met732Lys	p.M732K	ENST00000398015	NM_004441.4	732	aTg/aAg																																																																															
ATR	545	MSKCC	GRCh37	3	142204090	142204090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	44	370	0	ENST00000350721.4:c.6113G>T	p.Gly2038Val	p.G2038V	ENST00000350721	NM_001184.3	2038	gGg/gTg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504369	186504369	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	32	229	0	ENST00000323963.5:c.706C>G	p.Leu236Val	p.L236V	ENST00000323963		236	Ctg/Gtg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259422	89259422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	47	478	0	ENST00000336596.2:c.566G>T	p.Cys189Phe	p.C189F	ENST00000336596	NM_005233.5	189	tGt/tTt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149452874	149452874	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	63	383	0	ENST00000286301.3:c.1072G>C	p.Asp358His	p.D358H	ENST00000286301	NM_005211.3	358	Gac/Cac																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149510120	149510120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	42	283	0	ENST00000261799.4:c.1349C>T	p.Ala450Val	p.A450V	ENST00000261799	NM_002609.3	450	gCc/gTc																																																																															
NPM1	4869	MSKCC	GRCh37	5	170832393	170832393	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	11	136	0	ENST00000296930.5:c.757G>T	p.Ala253Ser	p.A253S	ENST00000296930	NM_002520.6	253	Gca/Tca																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2081839	2081839	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	91	326	0	ENST00000349721.2:c.2192G>T	p.Gly731Val	p.G731V	ENST00000349721	NM_003070.3	731	gGc/gTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521484	8521484	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	105	349	0	ENST00000356435.5:c.754A>T	p.Ser252Cys	p.S252C	ENST00000356435		252	Agc/Tgc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87636209	87636209	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	40	389	0	ENST00000277120.3:c.2374C>A	p.Arg792Ser	p.R792S	ENST00000277120		792	Cgc/Agc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459462	50459462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	73	370	0	ENST00000331340.3:c.751G>A	p.Glu251Lys	p.E251K	ENST00000331340	NM_006060.4	251	Gaa/Aaa																																																																															
POT1	25913	MSKCC	GRCh37	7	124493075	124493075	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1296966928		P-0085468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	52	279	0	ENST00000357628.3:c.820G>A	p.Gly274Arg	p.G274R	ENST00000357628	NM_015450.2	274	Gga/Aga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398278	25398279	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGC			P-0085468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	60	263	0	ENST00000256078.4:c.38_40dup	p.Gly13dup	p.G13dup	ENST00000256078	NM_033360.2	13	gta/gGCGta																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395104	139395104	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	53	453	0	ENST00000277541.6:c.5834A>G	p.Lys1945Arg	p.K1945R	ENST00000277541	NM_017617.3	1945	aAg/aGg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89845374	89845374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			718	56	486	0	ENST00000389301.3:c.1753C>T	p.Pro585Ser	p.P585S	ENST00000389301	NM_000135.2	585	Ccc/Tcc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039708	47039708	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0085468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	76	422	0	ENST00000329236.7:c.926G>C	p.Arg309Thr	p.R309T	ENST00000329236	NM_001204466.1	309	aGg/aCg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39570490	39570490	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	59	312	0	ENST00000262039.4:c.686A>T	p.Lys229Met	p.K229M	ENST00000262039	NM_002647.2	229	aAg/aTg																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30309790	30309790	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	73	537	0	ENST00000307677.4:c.232C>G	p.Arg78Gly	p.R78G	ENST00000307677	NM_138578.1	78	Cgg/Ggg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341305	89341336	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTGGCCGCCCGGCAGTGAACCCGCAGAATC	TCCTGGCCGCCCGGCAGTGAACCCGCAGAATC	-			P-0085468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	12	143	0	ENST00000301030.4:c.7599_7630del	p.Glu2533AspfsTer30	p.E2533Dfs*30	ENST00000301030	NM_001256183.1	2533	gaGATTCTGCGGGTTCACTGCCGGGCGGCCAGGAcc/gacc																																																																															
BTK	695	MSKCC	GRCh37	X	100626636	100626636	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	51	302	0	ENST00000308731.7:c.294C>A	p.Phe98Leu	p.F98L	ENST00000308731	NM_000061.2	98	ttC/ttA																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112317	115112318	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0085468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	24	380	0	ENST00000257566.3:c.1422_1423delinsTT	p.Gly475Cys	p.G475C	ENST00000257566	NM_016569.3	474	ccGGgc/ccTTgc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41223165	41223165	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	76	416	0	ENST00000357654.3:c.4766G>T	p.Arg1589Leu	p.R1589L	ENST00000357654	NM_007294.3	1589	cGt/cTt																																																																															
YES1	7525	MSKCC	GRCh37	18	751798	751798	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	38	260	0	ENST00000314574.4:c.278T>G	p.Val93Gly	p.V93G	ENST00000314574	NM_005433.3	93	gTt/gGt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258746	16258746	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs528055288		P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	87	535	0	ENST00000375759.3:c.6011C>T	p.Pro2004Leu	p.P2004L	ENST00000375759	NM_015001.2	2004	cCg/cTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258894	16258894	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	188	591	2	ENST00000375759.3:c.6164del	p.Pro2055LeufsTer9	p.P2055Lfs*9	ENST00000375759	NM_015001.2	2053	aaC/aa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243809254	243809254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	103	388	0	ENST00000263826.5:c.370C>A	p.Gln124Lys	p.Q124K	ENST00000263826	NM_005465.4	124	Caa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100982	27100983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	137	387	0	ENST00000324856.7:c.4268dup	p.Gln1424SerfsTer21	p.Q1424Sfs*21	ENST00000324856	NM_006015.4	1422	tcc/tCcc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	93	494	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154241	2154242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755455183		P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	107	501	2	ENST00000434045.2:c.686dup	p.Glu230ArgfsTer50	p.E230Rfs*50	ENST00000434045	NM_001127598.1	229	cca/ccCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	113	308	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1023835002		P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	175	400	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	132	488	3	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	189	534	2	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831446	72831446	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143025874		P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	32	479	0	ENST00000268489.5:c.5135G>A	p.Arg1712Gln	p.R1712Q	ENST00000268489	NM_006885.3	1712	cGg/cAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347452	89347452	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368237393		P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	188	495	0	ENST00000301030.4:c.5498C>T	p.Ala1833Val	p.A1833V	ENST00000301030	NM_001256183.1	1833	gCg/gTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	141	402	2	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	83	492	0	ENST00000293328.3:c.1101_1102dup	p.Gln368ProfsTer3	p.Q368Pfs*3	ENST00000293328	NM_012448.3	368	cag/cCCag																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740623	58740624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs763475304		P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	95	467	0	ENST00000305921.3:c.1535dup	p.Asn512LysfsTer16	p.N512Kfs*16	ENST00000305921	NM_003620.3	510	caa/cAaa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59924571	59924571	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761432927		P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	34	269	0	ENST00000259008.2:c.518G>A	p.Arg173His	p.R173H	ENST00000259008	NM_032043.2	173	cGt/cAt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78831653	78831653	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758599889		P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	37	404	0	ENST00000306801.3:c.1462C>T	p.Arg488Trp	p.R488W	ENST00000306801	NM_020761.2	488	Cgg/Tgg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303191	15303191	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs781622431		P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	179	503	0	ENST00000263388.2:c.337C>T	p.Arg113Ter	p.R113*	ENST00000263388	NM_000435.2	113	Cga/Tga																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353959	15353959	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1354137520		P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	52	142	0	ENST00000263377.2:c.2921C>A	p.Pro974Gln	p.P974Q	ENST00000263377	NM_058243.2	974	cCg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	165	504	1	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216188	36216188	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	176	493	0	ENST00000222270.7:c.3596G>C	p.Gly1199Ala	p.G1199A	ENST00000222270	NM_014727.1	1199	gGc/gCc																																																																															
INSR	3643	MSKCC	GRCh37	19	7267424	7267424	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	51	365	0	ENST00000302850.5:c.584A>G	p.Asn195Ser	p.N195S	ENST00000302850	NM_000208.2	195	aAc/aGc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	176	482	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	105	492	0	ENST00000375687.4:c.1933_1934dup	p.Gly646ValfsTer58	p.G646Vfs*58	ENST00000375687	NM_015338.5	642	-/GG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	123	324	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	88	390	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524734	187524734	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	195	424	0	ENST00000441802.2:c.10946A>G	p.Asn3649Ser	p.N3649S	ENST00000441802	NM_005245.3	3649	aAc/aGc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	151	397	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	137	479	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053023	180053023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	30	536	0	ENST00000261937.6:c.1267del	p.Gln423ArgfsTer70	p.Q423Rfs*70	ENST00000261937	NM_182925.4	423	Cag/ag																																																																															
PMS2	5395	MSKCC	GRCh37	7	6035204	6035207	+	frameshift_variant	Frame_Shift_Del	DEL	CTGT	CTGT	-	rs267608154		P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	91	443	0	ENST00000265849.7:c.861_864del	p.Arg287SerfsTer19	p.R287Sfs*19	ENST00000265849	NM_000535.5	287	agACAG/ag																																																																															
PMS2	5395	MSKCC	GRCh37	7	6042170	6042170	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	186	396	0	ENST00000265849.7:c.451del	p.Arg151AlafsTer50	p.R151Afs*50	ENST00000265849	NM_000535.5	151	Cgc/gc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417611	139417611	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1388726872		P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	137	387	0	ENST00000277541.6:c.433G>A	p.Ala145Thr	p.A145T	ENST00000277541	NM_017617.3	145	Gcc/Acc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426120	47426120	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519876		P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			48	228	239	0	ENST00000377045.4:c.640T>G	p.Ser214Ala	p.S214A	ENST00000377045	NM_001654.4	214	Tcc/Gcc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412647	63412648	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			53	116	206	0	ENST00000330258.3:c.519dup	p.Ser174Ter	p.S174*	ENST00000330258	NM_152424.3	173	-/T																																																																															
MTOR	2475	MSKCC	GRCh37	1	11308136	11308136	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	134	379	0	ENST00000361445.4:c.856A>C	p.Met286Leu	p.M286L	ENST00000361445	NM_004958.3	286	Atg/Ctg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458764	120458764	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	299	577	0	ENST00000256646.2:c.6581A>G	p.His2194Arg	p.H2194R	ENST00000256646	NM_024408.3	2194	cAt/cGt																																																																															
CTR9	9646	MSKCC	GRCh37	11	10785078	10785078	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	76	391	0	ENST00000361367.2:c.950A>G	p.His317Arg	p.H317R	ENST00000361367	NM_014633.3	317	cAt/cGt																																																																															
LMO1	4004	MSKCC	GRCh37	11	8248562	8248562	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	194	425	0	ENST00000335790.3:c.325T>C	p.Tyr109His	p.Y109H	ENST00000335790	NM_002315.2	109	Tat/Cat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438677	49438677	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	251	417	0	ENST00000301067.7:c.4813A>G	p.Met1605Val	p.M1605V	ENST00000301067	NM_003482.3	1605	Atg/Gtg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807290	3807290	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	145	308	0	ENST00000262367.5:c.3697A>G	p.Arg1233Gly	p.R1233G	ENST00000262367	NM_004380.2	1233	Agg/Ggg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30321739	30321739	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	86	305	0	ENST00000322652.5:c.1594A>G	p.Arg532Gly	p.R532G	ENST00000322652	NM_015355.2	532	Agg/Ggg																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33687310	33687310	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	18	398	0	ENST00000308377.4:c.1150A>G	p.Lys384Glu	p.K384E	ENST00000308377	NM_152270.3	384	Aag/Gag																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24145577	24145577	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	36	435	0	ENST00000263121.7:c.596A>C	p.Lys199Thr	p.K199T	ENST00000263121	NM_003073.3	199	aAg/aCg																																																																															
VHL	7428	MSKCC	GRCh37	3	10183856	10183856	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	150	358	0	ENST00000256474.2:c.325A>G	p.Ile109Val	p.I109V	ENST00000256474	NM_000551.3	109	Atc/Gtc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52668702	52668702	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	103	406	0	ENST00000394830.3:c.1217A>G	p.Glu406Gly	p.E406G	ENST00000394830	NM_018313.4	406	gAa/gGa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117683935	117683935	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	83	402	0	ENST00000368508.3:c.3212A>C	p.Lys1071Thr	p.K1071T	ENST00000368508	NM_002944.2	1071	aAa/aCa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864654	68864654	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	109	211	0	ENST00000288368.4:c.25A>C	p.Ser9Arg	p.S9R	ENST00000288368	NM_024870.2	9	Agc/Cgc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044541	47044541	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0084513-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			204	32	236	0	ENST00000329236.7:c.1804C>T	p.Arg602Ter	p.R602*	ENST00000329236	NM_001204466.1	602	Cga/Tga																																																																															
MET	4233	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	T			P-0084513-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	43	244	0	ENST00000397752.3:c.3028+3A>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
TAP2	6891	MSKCC	GRCh37	6	32798139	32798139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084513-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	40	439	0	ENST00000374899.4:c.1540G>A	p.Ala514Thr	p.A514T	ENST00000374899	NM_018833.2	514	Gcc/Acc																																																																															
MED12	9968	MSKCC	GRCh37	X	70339728	70339728	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0084513-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			199	30	180	0	ENST00000374080.3:c.396+1G>T		p.X132_splice	ENST00000374080		132																																																																																
FLT3	2322	MSKCC	GRCh37	13	28626735	28626735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			222	52	354	0	ENST00000241453.7:c.561G>T	p.Glu187Asp	p.E187D	ENST00000241453	NM_004119.2	187	gaG/gaT																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39647380	39647380	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1306170227		P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			243	60	327	0	ENST00000262039.4:c.2552C>T	p.Ser851Leu	p.S851L	ENST00000262039	NM_002647.2	851	tCg/tTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600446	10600446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			208	44	424	1	ENST00000171111.5:c.1409G>A	p.Arg470His	p.R470H	ENST00000171111	NM_203500.1	470	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578483	7578483	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			160	119	434	0	ENST00000269305.4:c.447del	p.Thr150HisfsTer20	p.T150Hfs*20	ENST00000269305	NM_001126112.2	149	tcC/tc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39721144	39721144	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			334	49	378	0	ENST00000361337.2:c.647A>C	p.Lys216Thr	p.K216T	ENST00000361337	NM_003286.2	216	aAg/aCg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221711	55221711	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			280	123	415	0	ENST00000275493.2:c.755G>T	p.Arg252Leu	p.R252L	ENST00000275493	NM_005228.3	252	cGc/cTc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248708	212248708	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	34	438	0	ENST00000342788.4:c.3559G>T	p.Glu1187Ter	p.E1187*	ENST00000342788	NM_005235.2	1187	Gaa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094447	27094447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			232	88	395	0	ENST00000324856.7:c.3155A>G	p.Tyr1052Cys	p.Y1052C	ENST00000324856	NM_006015.4	1052	tAt/tGt																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082749	16082749	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			80	12	169	0	ENST00000281043.3:c.563A>C	p.Asp188Ala	p.D188A	ENST00000281043	NM_005378.4	188	gAt/gCt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542692	187542692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			207	68	412	0	ENST00000441802.2:c.5048G>T	p.Gly1683Val	p.G1683V	ENST00000441802	NM_005245.3	1683	gGg/gTg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18943124	18943124	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			119	10	302	0	ENST00000262803.5:c.106A>C	p.Thr36Pro	p.T36P	ENST00000262803	NM_002911.3	36	Acc/Ccc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223542	36223542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			198	53	442	0	ENST00000222270.7:c.6092C>A	p.Thr2031Asn	p.T2031N	ENST00000222270	NM_014727.1	2031	aCc/aAc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38591596	38591596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	31	274	0	ENST00000299084.4:c.55G>A	p.Ala19Thr	p.A19T	ENST00000299084	NM_152594.2	19	Gct/Act																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212576839	212576839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			157	24	314	0	ENST00000342788.4:c.1060G>T	p.Asp354Tyr	p.D354Y	ENST00000342788	NM_005235.2	354	Gac/Tac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041398	47041398	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			154	59	232	0	ENST00000329236.7:c.1508A>G	p.Tyr503Cys	p.Y503C	ENST00000329236	NM_001204466.1	503	tAc/tGc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670795	134670795	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			168	81	398	0	ENST00000398015.3:c.706A>G	p.Ile236Val	p.I236V	ENST00000398015	NM_004441.4	236	Atc/Gtc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747951	41747951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			129	51	225	0	ENST00000226382.2:c.818G>A	p.Trp273Ter	p.W273*	ENST00000226382	NM_003924.3	273	tGg/tAg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37856518	37856518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	65	314	0	ENST00000269571.5:c.27G>T	p.Trp9Cys	p.W9C	ENST00000269571		9	tgG/tgT																																																																															
EP300	2033	MSKCC	GRCh37	22	41489034	41489034	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			129	87	274	0	ENST00000263253.7:c.26G>T	p.Gly9Val	p.G9V	ENST00000263253	NM_001429.3	9	gGg/gTg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998906	100998906	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			222	79	329	0	ENST00000325455.5:c.896C>A	p.Thr299Lys	p.T299K	ENST00000325455	NM_001202474.3	299	aCg/aAg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13940466	13940466	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	42	282	0	ENST00000405192.2:c.1042-2A>T		p.X348_splice	ENST00000405192	NM_001163147.1	348																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212251782	212251782	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			323	49	431	0	ENST00000342788.4:c.3277G>T	p.Val1093Leu	p.V1093L	ENST00000342788	NM_005235.2	1093	Gtg/Ttg																																																																															
KIT	3815	MSKCC	GRCh37	4	55575675	55575675	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	34	266	0	ENST00000288135.5:c.1201G>T	p.Ala401Ser	p.A401S	ENST00000288135	NM_000222.2	401	Gct/Tct																																																																															
HGF	3082	MSKCC	GRCh37	7	81331935	81331935	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			234	32	308	0	ENST00000222390.5:c.2149C>G	p.His717Asp	p.H717D	ENST00000222390	NM_000601.4	717	Cac/Gac																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690724	33690724	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			317	91	385	0	ENST00000308377.4:c.103C>A	p.Gln35Lys	p.Q35K	ENST00000308377	NM_152270.3	35	Cag/Aag																																																																															
SMO	6608	MSKCC	GRCh37	7	128851596	128851596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			156	120	317	0	ENST00000249373.3:c.1921C>A	p.Pro641Thr	p.P641T	ENST00000249373	NM_005631.4	641	Cct/Act																																																																															
IL10	3586	MSKCC	GRCh37	1	206945680	206945680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			246	47	428	0	ENST00000423557.1:c.101C>A	p.Pro34Gln	p.P34Q	ENST00000423557	NM_000572.2	34	cCa/cAa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217857	2217857	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			189	35	358	0	ENST00000398665.3:c.2631C>G	p.Asn877Lys	p.N877K	ENST00000398665	NM_032482.2	877	aaC/aaG																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868310	45868310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			199	35	321	0	ENST00000391945.4:c.467G>T	p.Arg156Leu	p.R156L	ENST00000391945	NM_000400.3	156	cGa/cTa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622416	1622416	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			87	58	220	1	ENST00000344749.5:c.550-2A>T		p.X184_splice	ENST00000344749	NM_001136139.2	184																																																																																
FLT3	2322	MSKCC	GRCh37	13	28644751	28644751	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			149	66	315	0	ENST00000241453.7:c.44-2A>T		p.X15_splice	ENST00000241453	NM_004119.2	15																																																																																
IL7R	3575	MSKCC	GRCh37	5	35876113	35876113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			252	187	343	0	ENST00000303115.3:c.905G>T	p.Ser302Ile	p.S302I	ENST00000303115	NM_002185.3	302	aGt/aTt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120460327	120460327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			308	46	386	0	ENST00000256646.2:c.5988G>T	p.Leu1996Phe	p.L1996F	ENST00000256646	NM_024408.3	1996	ttG/ttT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530048	212530048	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	119	339	0	ENST00000342788.4:c.1871G>C	p.Gly624Ala	p.G624A	ENST00000342788	NM_005235.2	624	gGg/gCg																																																																															
MITF	4286	MSKCC	GRCh37	3	69988315	69988316	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			178	59	341	0	ENST00000352241.4:c.649_650delinsAA	p.Arg217Lys	p.R217K	ENST00000352241	NM_198159.2	217	CGa/AAa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851017	63851017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			311	52	402	0	ENST00000279873.7:c.1795C>T	p.Pro599Ser	p.P599S	ENST00000279873	NM_032199.2	599	Ccc/Tcc																																																																															
BARD1	580	MSKCC	GRCh37	2	215645596	215645596	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			274	52	384	0	ENST00000260947.4:c.1002G>C	p.Lys334Asn	p.K334N	ENST00000260947	NM_000465.2	334	aaG/aaC																																																																															
NRAS	4893	MSKCC	GRCh37	1	115252276	115252276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			276	36	357	0	ENST00000369535.4:c.364A>G	p.Thr122Ala	p.T122A	ENST00000369535	NM_002524.4	122	Aca/Gca																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94204809	94204809	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			205	18	325	0	ENST00000323929.3:c.776A>T	p.Gln259Leu	p.Q259L	ENST00000323929	NM_005591.3	259	cAg/cTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096037	11096037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			187	48	351	0	ENST00000344626.4:c.311C>T	p.Ala104Val	p.A104V	ENST00000344626	NM_003072.3	104	gCt/gTt																																																																															
ACVR1	90	MSKCC	GRCh37	2	158595023	158595023	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			245	84	387	0	ENST00000263640.3:c.1324G>C	p.Glu442Gln	p.E442Q	ENST00000263640	NM_001105.4	442	Gaa/Caa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38960635	38960635	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			247	80	305	0	ENST00000357387.3:c.1716G>T	p.Arg572Ser	p.R572S	ENST00000357387	NM_152756.3	572	agG/agT																																																																															
UPF1	5976	MSKCC	GRCh37	19	18961610	18961610	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			182	34	295	0	ENST00000262803.5:c.743A>T	p.Glu248Val	p.E248V	ENST00000262803	NM_002911.3	248	gAg/gTg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44515553	44515553	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	38	335	0	ENST00000291552.4:c.343G>C	p.Val115Leu	p.V115L	ENST00000291552	NM_006758.2	115	Gtc/Ctc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95556924	95556924	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			186	27	231	0	ENST00000343455.3:c.5680G>T	p.Gly1894Cys	p.G1894C	ENST00000343455	NM_177438.2	1894	Ggt/Tgt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18715685	18715685	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			147	111	382	0	ENST00000266497.5:c.3516G>C	p.Leu1172Phe	p.L1172F	ENST00000266497		1172	ttG/ttC																																																																															
AGO2	27161	MSKCC	GRCh37	8	141561499	141561499	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			268	83	427	0	ENST00000220592.5:c.1306del	p.Asp436ThrfsTer32	p.D436Tfs*32	ENST00000220592	NM_012154.3	436	Gac/ac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106460	27106460	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065815-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			303	58	425	0	ENST00000324856.7:c.6071G>T	p.Arg2024Leu	p.R2024L	ENST00000324856	NM_006015.4	2024	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			326	94	478	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs79184941		P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	61	460	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55223550	55223550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			338	19	477	0	ENST00000275493.2:c.917C>T	p.Ser306Leu	p.S306L	ENST00000275493	NM_005228.3	306	tCg/tTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600329	10600329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			271	55	473	0	ENST00000171111.5:c.1526G>A	p.Gly509Glu	p.G509E	ENST00000171111	NM_203500.1	509	gGg/gAg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86649000	86649000	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755634472		P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			172	23	345	0	ENST00000274376.6:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000274376	NM_002890.2	427	cGa/cAa																																																																															
STK11	6794	MSKCC	GRCh37	19	1221302	1221302	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			228	73	499	1	ENST00000326873.7:c.827del	p.Gly276AlafsTer11	p.G276Afs*11	ENST00000326873	NM_000455.4	275	ccG/cc																																																																															
INSR	3643	MSKCC	GRCh37	19	7125473	7125473	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913144		P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			332	111	471	0	ENST00000302850.5:c.3079C>T	p.Arg1027Ter	p.R1027*	ENST00000302850	NM_000208.2	1027	Cga/Tga																																																																															
TEK	7010	MSKCC	GRCh37	9	27212783	27212783	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754385594		P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	95	426	0	ENST00000380036.4:c.2765C>T	p.Thr922Met	p.T922M	ENST00000380036	NM_000459.3	922	aCg/aTg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182167	99182167	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			320	99	380	0	ENST00000074304.5:c.2232C>G	p.Phe744Leu	p.F744L	ENST00000074304	NM_001134224.1	744	ttC/ttG																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736113	204736113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			266	87	382	0	ENST00000302823.3:c.470G>T	p.Cys157Phe	p.C157F	ENST00000302823	NM_005214.4	157	tGc/tTc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69009400	69009400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			307	95	394	0	ENST00000288368.4:c.2517G>A	p.Met839Ile	p.M839I	ENST00000288368	NM_024870.2	839	atG/atA																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741620	145741620	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755963144		P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			294	84	430	0	ENST00000428558.2:c.883G>A	p.Glu295Lys	p.E295K	ENST00000428558	NM_004260.3	295	Gag/Aag																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206653438	206653438	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200663079		P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	19	403	0	ENST00000367120.3:c.1322G>A	p.Arg441Gln	p.R441Q	ENST00000367120	NM_014002.3	441	cGg/cAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11129671	11129671	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			286	63	446	0	ENST00000344626.4:c.2481del	p.Ser828ProfsTer3	p.S828Pfs*3	ENST00000344626	NM_003072.3	826	gCc/gc																																																																															
YES1	7525	MSKCC	GRCh37	18	724587	724587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			165	42	296	0	ENST00000314574.4:c.1469G>A	p.Arg490Lys	p.R490K	ENST00000314574	NM_005433.3	490	aGg/aAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213474	36213474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			290	26	451	0	ENST00000222270.7:c.2576C>T	p.Pro859Leu	p.P859L	ENST00000222270	NM_014727.1	859	cCc/cTc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660896	227660896	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			418	52	426	0	ENST00000305123.5:c.2559C>A	p.Ser853Arg	p.S853R	ENST00000305123	NM_005544.2	853	agC/agA																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599905	28599905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			241	95	327	0	ENST00000253063.3:c.787G>C	p.Glu263Gln	p.E263Q	ENST00000253063	NM_031459.4	263	Gag/Cag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357096	89357096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			312	60	458	0	ENST00000301030.4:c.538G>A	p.Asp180Asn	p.D180N	ENST00000301030	NM_001256183.1	180	Gac/Aac																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62292820	62292820	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	A	A	T			P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			302	34	404	0	ENST00000482936.1:c.272A>T	p.Asn91Ile	p.N91I	ENST00000482936		91	aAc/aTc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637300	176637300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	52	442	0	ENST00000439151.2:c.1900G>A	p.Asp634Asn	p.D634N	ENST00000439151	NM_022455.4	634	Gat/Aat																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988432	36988432	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			280	47	322	0	ENST00000354822.5:c.221G>T	p.Gly74Val	p.G74V	ENST00000354822	NM_001079668.2	74	gGc/gTc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332331	70332331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			308	65	383	0	ENST00000373644.4:c.236C>A	p.Ala79Glu	p.A79E	ENST00000373644	NM_030625.2	79	gCa/gAa																																																																															
SCG5	6447	MSKCC	GRCh37	15	32935816	32935816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			260	40	359	0	ENST00000300175.4:c.23C>T	p.Thr8Ile	p.T8I	ENST00000300175	NM_001144757.1	8	aCc/aTc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2977655	2977655	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			291	18	293	0	ENST00000396946.4:c.1029G>T	p.Glu343Asp	p.E343D	ENST00000396946	NM_032415.4	343	gaG/gaT																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25471043	25471044	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			335	104	474	0	ENST00000264709.3:c.717_718delinsTT	p.Glu240Ter	p.E240*	ENST00000264709	NM_175629.2	239	gtGGag/gtTTag																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563209	21563209	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			321	33	459	0	ENST00000382592.4:c.710C>G	p.Ala237Gly	p.A237G	ENST00000382592	NM_014572.2	237	gCc/gGc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136045	64136045	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			246	139	379	0	ENST00000334205.4:c.1306G>C	p.Glu436Gln	p.E436Q	ENST00000334205	NM_003942.2	436	Gag/Cag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992764	68992764	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	18	420	0	ENST00000288368.4:c.1729C>G	p.Arg577Gly	p.R577G	ENST00000288368	NM_024870.2	577	Cga/Gga																																																																															
RET	5979	MSKCC	GRCh37	10	43600585	43600585	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068398-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			298	50	410	0	ENST00000355710.3:c.811A>G	p.Thr271Ala	p.T271A	ENST00000355710	NM_020975.4	271	Acc/Gcc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918491	44918491	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0085141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	63	151	0	ENST00000377967.4:c.975-1G>A		p.X325_splice	ENST00000377967	NM_021140.2	325																																																																																
CDK8	1024	MSKCC	GRCh37	13	26959350	26959350	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0085141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	67	238	0	ENST00000381527.3:c.517G>A	p.Asp173Asn	p.D173N	ENST00000381527	NM_001260.1	173	Gac/Aac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949021	44949021	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0085141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	83	137	0	ENST00000377967.4:c.3582G>A	p.Trp1194Ter	p.W1194*	ENST00000377967	NM_021140.2	1194	tgG/tgA																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742827	145742827	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	82	277	0	ENST00000428558.2:c.184T>C	p.Ser62Pro	p.S62P	ENST00000428558	NM_004260.3	62	Tcc/Ccc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524862	187524862	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	149	405	0	ENST00000441802.2:c.10818C>A	p.Asp3606Glu	p.D3606E	ENST00000441802	NM_005245.3	3606	gaC/gaA																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351500	89351500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	98	347	0	ENST00000301030.4:c.1450G>A	p.Glu484Lys	p.E484K	ENST00000301030	NM_001256183.1	484	Gag/Aag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526651	31526651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	88	252	0	ENST00000344624.3:c.389C>T	p.Pro130Leu	p.P130L	ENST00000344624		130	cCc/cTc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577329	64577330	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs386134253		P-0085408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			50	69	278	0	ENST00000337652.1:c.252dup	p.Ile85TyrfsTer32	p.I85Yfs*32	ENST00000337652	NM_130803.2	84	-/T																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041190	47041190	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0085412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	58	311	0	ENST00000329236.7:c.1384C>T	p.Gln462Ter	p.Q462*	ENST00000329236	NM_001204466.1	462	Cag/Tag																																																																															
MAX	4149	MSKCC	GRCh37	14	65560524	65560524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	48	266	0	ENST00000358664.4:c.73C>T	p.Arg25Trp	p.R25W	ENST00000358664	NM_002382.4	25	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0085412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	45	246	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0085452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	35	321	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435611	56435611	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	51	472	0	ENST00000407977.2:c.1526T>C	p.Val509Ala	p.V509A	ENST00000407977		509	gTg/gCg																																																																															
MED12	9968	MSKCC	GRCh37	X	70338695	70338695	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	48	373	0	ENST00000374080.3:c.91C>G	p.Gln31Glu	p.Q31E	ENST00000374080		31	Cag/Gag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30194772	30194772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	47	471	0	ENST00000331968.5:c.373G>A	p.Glu125Lys	p.E125K	ENST00000331968	NM_002742.2	125	Gaa/Aaa																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981689	63981689	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			799	76	600	0	ENST00000295900.6:c.2191A>T	p.Met731Leu	p.M731L	ENST00000295900	NM_000333.3	731	Atg/Ttg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111782	56111782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	32	237	0	ENST00000399503.3:c.382G>T	p.Val128Leu	p.V128L	ENST00000399503	NM_005921.1	128	Gtg/Ttg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492856	56492856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	59	531	0	ENST00000407977.2:c.83C>T	p.Thr28Ile	p.T28I	ENST00000407977		28	aCa/aTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151843818	151843818	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0085452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	39	391	0	ENST00000262189.6:c.13897G>T	p.Val4633Phe	p.V4633F	ENST00000262189	NM_170606.2	4633	Gtc/Ttc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23649245	23649245	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0085452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	48	418	0	ENST00000261584.4:c.137del	p.His46LeufsTer7	p.H46Lfs*7	ENST00000261584	NM_024675.3	46	cAt/ct																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396739	139396766	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTCGCCGAGGGGCTCCCGCCGCTTCT	TCCTCGCCGAGGGGCTCCCGCCGCTTCT	-			P-0085452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	41	429	0	ENST00000277541.6:c.5342_5369del	p.Lys1781ThrfsTer8	p.K1781Tfs*8	ENST00000277541	NM_017617.3	1781	aAGAAGCGGCGGGAGCCCCTCGGCGAGGAc/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs863224499		P-0058449-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			265	150	414	0	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
SLX4	84464	MSKCC	GRCh37	16	3640985	3640985	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147492092		P-0058449-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			354	33	470	0	ENST00000294008.3:c.2654C>T	p.Pro885Leu	p.P885L	ENST00000294008	NM_032444.2	885	cCg/cTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933342	39933342	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058449-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	68	359	0	ENST00000378444.4:c.1257A>T	p.Lys419Asn	p.K419N	ENST00000378444	NM_001123385.1	419	aaA/aaT																																																																															
ATM	472	MSKCC	GRCh37	11	108196894	108196894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058449-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			214	117	416	0	ENST00000278616.4:c.6917G>A	p.Ser2306Asn	p.S2306N	ENST00000278616	NM_000051.3	2306	aGt/aAt																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858184	152858184	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058449-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			195	35	282	0	ENST00000406277.2:c.431T>A	p.Leu144His	p.L144H	ENST00000406277	NM_152274.4	144	cTc/cAc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0059659-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			4	676	229	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66526085	66526086	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0059659-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			56	851	308	0	ENST00000358598.2:c.918dup	p.Ser307ValfsTer4	p.S307Vfs*4	ENST00000358598	NM_212471.2	306	cgg/cGgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0082765-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	89	416	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593405	48593405	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519962		P-0082765-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			415	56	410	0	ENST00000342988.3:c.1156G>T	p.Gly386Cys	p.G386C	ENST00000342988	NM_005359.5	386	Ggt/Tgt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302946	15302946	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0082765-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			517	35	586	0	ENST00000263388.2:c.504C>A	p.Cys168Ter	p.C168*	ENST00000263388	NM_000435.2	168	tgC/tgA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151919124	151919124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082765-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			315	68	363	0	ENST00000262189.6:c.3461C>T	p.Ser1154Leu	p.S1154L	ENST00000262189	NM_170606.2	1154	tCa/tTa																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0082969-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	70	324	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115871	8115872	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0082969-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	61	424	0	ENST00000346208.3:c.1219_1220del	p.Ser407AlafsTer99	p.S407Afs*99	ENST00000346208		406	aTC/a																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874038	151874038	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0082969-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	23	392	1	ENST00000262189.6:c.8500G>T	p.Glu2834Ter	p.E2834*	ENST00000262189	NM_170606.2	2834	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0085267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	82	504	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650559	48650559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	98	286	0	ENST00000376670.3:c.529G>A	p.Gly177Arg	p.G177R	ENST00000376670	NM_002049.3	177	Ggg/Agg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0085267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	56	274	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691838	30691838	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	99	331	0	ENST00000359013.4:c.415G>T	p.Glu139Ter	p.E139*	ENST00000359013	NM_001024847.2	139	Gaa/Taa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435512	56435518	+	frameshift_variant	Frame_Shift_Del	DEL	GTTTCCC	GTTTCCC	-			P-0085267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	56	435	0	ENST00000407977.2:c.1619_1625del	p.Gly540AlafsTer158	p.G540Afs*158	ENST00000407977		540	gGGGAAACc/gc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0085268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	10	401	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0085269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	108	287	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0085269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			70	298	376	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
TERT	7015	MSKCC	GRCh37	5	1293592	1293592	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1013341756		P-0085269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	72	427	1	ENST00000310581.5:c.1409G>A	p.Arg470His	p.R470H	ENST00000310581	NM_198253.2	470	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971114	21971114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501269		P-0085269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			107	148	489	0	ENST00000304494.5:c.244G>A	p.Val82Met	p.V82M	ENST00000304494	NM_000077.4	82	Gtg/Atg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023339	31023339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	53	395	0	ENST00000375687.4:c.2824G>T	p.Gly942Trp	p.G942W	ENST00000375687	NM_015338.5	942	Ggg/Tgg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649926	88649926	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			74	28	206	0	ENST00000372037.3:c.175T>A	p.Leu59Ile	p.L59I	ENST00000372037	NM_004329.2	59	Tta/Ata																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25536798	25536798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1290646331		P-0085269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	120	383	0	ENST00000264709.3:c.56G>A	p.Arg19Gln	p.R19Q	ENST00000264709	NM_175629.2	19	cGg/cAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5240215	5240215	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141697567		P-0085269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	17	388	0	ENST00000357368.4:c.1699C>T	p.Arg567Trp	p.R567W	ENST00000357368	NM_002850.3	567	Cgg/Tgg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742503	17742503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	60	367	0	ENST00000250003.3:c.685G>A	p.Ala229Thr	p.A229T	ENST00000250003	NM_002478.4	229	Gcc/Acc																																																																															
AXL	558	MSKCC	GRCh37	19	41726618	41726618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	112	343	0	ENST00000301178.4:c.163C>T	p.Arg55Trp	p.R55W	ENST00000301178	NM_021913.4	55	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435933	56435933	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0085269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			57	554	513	0	ENST00000407977.2:c.1204C>T	p.Gln402Ter	p.Q402*	ENST00000407977		402	Cag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42041683	42041683	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	79	432	0	ENST00000219905.7:c.5878C>A	p.Leu1960Ile	p.L1960I	ENST00000219905	NM_001164273.1	1960	Ctt/Att																																																																															
ATM	472	MSKCC	GRCh37	11	108216616	108216616	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0085269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	49	328	0	ENST00000278616.4:c.8565T>G	p.Ser2855Arg	p.S2855R	ENST00000278616	NM_000051.3	2855	agT/agG																																																																															
CTR9	9646	MSKCC	GRCh37	11	10800490	10800490	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	75	349	0	ENST00000361367.2:c.3360C>A	p.Asp1120Glu	p.D1120E	ENST00000361367	NM_014633.3	1120	gaC/gaA																																																																															
TEK	7010	MSKCC	GRCh37	9	27157831	27157831	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0085269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	63	340	0	ENST00000380036.4:c.55A>T	p.Thr19Ser	p.T19S	ENST00000380036	NM_000459.3	19	Act/Tct																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920413	114920413	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767830105		P-0085322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	190	296	0	ENST00000543371.1:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000543371	NM_001198531.1	452	Ggg/Agg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0085322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	255	303	3	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001373	150001373	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200119992		P-0085322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	35	332	0	ENST00000253339.5:c.2231G>A	p.Arg744Gln	p.R744Q	ENST00000253339		744	cGa/cAa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562576	21562576	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762484566		P-0085322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	157	243	0	ENST00000382592.4:c.1343G>A	p.Arg448His	p.R448H	ENST00000382592	NM_014572.2	448	cGt/cAt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15935659	15935659	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745396360		P-0085322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	128	306	0	ENST00000268712.3:c.7274C>T	p.Ala2425Val	p.A2425V	ENST00000268712	NM_006311.3	2425	gCc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112174776	112174793	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	ATAGCATAAAATATAATG	ATAGCATAAAATATAATG	-			P-0085322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	95	378	0	ENST00000257430.4:c.3486_3503del	p.Tyr1162_Glu1168delinsTer	p.Y1162_E1168delins*	ENST00000257430	NM_000038.5	1162	tATAGCATAAAATATAATGaa/taa																																																																															
BBC3	27113	MSKCC	GRCh37	19	47729850	47729852	+	inframe_deletion	In_Frame_Del	DEL	CCG	CCG	-			P-0085322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	103	345	0	ENST00000449228.1:c.537_539del	p.Gly180del	p.G180del	ENST00000449228	NM_001127240.2	179	ggCGGa/gga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0085327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	474	412	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11269480	11269480	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	253	354	0	ENST00000361445.4:c.3690G>T	p.Leu1230Phe	p.L1230F	ENST00000361445	NM_004958.3	1230	ttG/ttT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49439954	49439954	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0085327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	327	371	0	ENST00000301067.7:c.4587G>A	p.Trp1529Ter	p.W1529*	ENST00000301067	NM_003482.3	1529	tgG/tgA																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260233	16260233	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	355	492	0	ENST00000375759.3:c.7498G>C	p.Glu2500Gln	p.E2500Q	ENST00000375759	NM_015001.2	2500	Gag/Cag																																																																															
PPARG	5468	MSKCC	GRCh37	3	12421290	12421290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	333	391	0	ENST00000287820.6:c.170C>A	p.Ser57Tyr	p.S57Y	ENST00000287820	NM_015869.4	57	tCc/tAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058707	180058707	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	265	343	0	ENST00000261937.6:c.130G>T	p.Gly44Cys	p.G44C	ENST00000261937	NM_182925.4	44	Ggt/Tgt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15273353	15273353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	134	280	0	ENST00000263388.2:c.5836G>A	p.Ala1946Thr	p.A1946T	ENST00000263388	NM_000435.2	1946	Gct/Act																																																																															
ARID2	196528	MSKCC	GRCh37	12	46254645	46254645	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	241	316	0	ENST00000334344.6:c.4835C>G	p.Pro1612Arg	p.P1612R	ENST00000334344	NM_152641.2	1612	cCt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579369	7579369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	461	400	0	ENST00000269305.4:c.318C>G	p.Ser106Arg	p.S106R	ENST00000269305	NM_001126112.2	106	agC/agG																																																																															
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1023835002		P-0085329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	203	340	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69028112	69028112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	163	357	0	ENST00000288368.4:c.3271G>A	p.Gly1091Arg	p.G1091R	ENST00000288368	NM_024870.2	1091	Gga/Aga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970934	21971019	+	frameshift_variant	Frame_Shift_Del	DEL	GGTTACTGCCTCTGGTGCCCCCCGCAGCCGCGCGCAGGTACCGTGCGACATCGCGATGGCCCAGCTCCTCAGCCAGGTCCACGGGC	GGTTACTGCCTCTGGTGCCCCCCGCAGCCGCGCGCAGGTACCGTGCGACATCGCGATGGCCCAGCTCCTCAGCCAGGTCCACGGGC	-			P-0085329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	106	371	0	ENST00000304494.5:c.339_424del	p.Pro114CysfsTer22	p.P114Cfs*22	ENST00000304494	NM_000077.4	113	ctGCCCGTGGACCTGGCTGAGGAGCTGGGCCATCGCGATGTCGCACGGTACCTGCGCGCGGCTGCGGGGGGCACCAGAGGCAGTAACCat/ctat																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500582	99500582	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	254	408	0	ENST00000268035.6:c.4015A>G	p.Ser1339Gly	p.S1339G	ENST00000268035	NM_000875.3	1339	Agc/Ggc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63760054	63760054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0085329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	248	294	0	ENST00000279873.7:c.710del	p.Asn237ThrfsTer47	p.N237Tfs*47	ENST00000279873	NM_032199.2	236	gAa/ga																																																																															
CYLD	1540	MSKCC	GRCh37	16	50830419	50830422	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	ACTG	ACTG	CCT			P-0085329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	205	327	1	ENST00000398568.2:c.2862_*3delinsCCT		p.*954*	ENST00000398568	NM_001042412.1	954																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31024614	31024614	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147456014		P-0085343-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	326	271	0	ENST00000375687.4:c.4099G>A	p.Val1367Ile	p.V1367I	ENST00000375687	NM_015338.5	1367	Gtc/Atc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900977	3900978	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0085343-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	23	198	0	ENST00000262367.5:c.118_119insCG	p.Leu40ProfsTer6	p.L40Pfs*6	ENST00000262367	NM_004380.2	40	ctt/cCGtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577600	7577601	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0085343-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			55	260	202	0	ENST00000269305.4:c.680_681insAT	p.Asp228LeufsTer20	p.D228Lfs*20	ENST00000269305	NM_001126112.2	227	tct/tcATt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0085347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	73	254	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55238896	55238896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	45	180	0	ENST00000275493.2:c.1909C>T	p.Pro637Ser	p.P637S	ENST00000275493	NM_005228.3	637	Cca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577601	7577601	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	44	232	0	ENST00000269305.4:c.680del	p.Ser227LeufsTer20	p.S227Lfs*20	ENST00000269305	NM_001126112.2	227	tCt/tt																																																																															
XIAP	331	MSKCC	GRCh37	X	123019833	123019833	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	40	299	0	ENST00000355640.3:c.321T>A	p.Asn107Lys	p.N107K	ENST00000355640		107	aaT/aaA																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006868	47006868	+	5_prime_UTR_variant	5'UTR	SNP	G	G	T			P-0085347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	28	285	0	ENST00000329236.7:c.-13G>T		p.*5*	ENST00000329236	NM_001204466.1																																																																																	
FAT1	2195	MSKCC	GRCh37	4	187521413	187521415	+	frameshift_variant	Frame_Shift_Del	DEL	CAC	CAC	T			P-0085347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	30	265	0	ENST00000441802.2:c.11740_11742delinsA	p.Val3914SerfsTer34	p.V3914Sfs*34	ENST00000441802	NM_005245.3	3914	GTG/A																																																																															
APC	324	MSKCC	GRCh37	5	112174217	112174217	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0085349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	123	328	0	ENST00000257430.4:c.2926A>T	p.Arg976Ter	p.R976*	ENST00000257430	NM_000038.5	976	Aga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0085349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	156	377	0	ENST00000257430.4:c.4473dup	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72058517	72058517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372023233		P-0085349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	166	293	0	ENST00000357731.5:c.923C>T	p.Ala308Val	p.A308V	ENST00000357731	NM_173808.2	308	gCg/gTg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701889	43701889	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0085349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	140	223	0	ENST00000382044.4:c.5356C>T	p.Arg1786Ter	p.R1786*	ENST00000382044	NM_001141980.1	1786	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521256	187521256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	120	358	0	ENST00000441802.2:c.11899C>T	p.Pro3967Ser	p.P3967S	ENST00000441802	NM_005245.3	3967	Cct/Tct																																																																															
KDM5A	5927	MSKCC	GRCh37	12	472161	472162	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0085349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	341	319	0	ENST00000399788.2:c.639dup	p.Leu214SerfsTer19	p.L214Sfs*19	ENST00000399788	NM_001042603.1	213	-/T																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983056	201983056	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0085349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	151	322	0	ENST00000359651.3:c.905del	p.Val302AlafsTer23	p.V302Afs*23	ENST00000359651		302	gTc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0085354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	184	383	0	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589812	69589812	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1158890592		P-0085354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	70	662	0	ENST00000168712.1:c.41C>T	p.Ala14Val	p.A14V	ENST00000168712	NM_002007.2	14	gCg/gTg																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514296	69514296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	48	509	0	ENST00000294312.3:c.385G>A	p.Asp129Asn	p.D129N	ENST00000294312	NM_005117.2	129	Gat/Aat																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589594	67589611	+	inframe_deletion	In_Frame_Del	DEL	AACACTCAGTTTCAAGAA	AACACTCAGTTTCAAGAA	-			P-0085354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	331	350	0	ENST00000274335.5:c.1359_1376del	p.Asn453_Glu458del	p.N453_E458del	ENST00000274335		453	AACACTCAGTTTCAAGAA/-																																																																															
AR	367	MSKCC	GRCh37	X	66941793	66941793	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			959	123	396	0	ENST00000374690.3:c.2437C>A	p.Leu813Ile	p.L813I	ENST00000374690	NM_000044.3	813	Ctc/Atc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0085359-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	108	319	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
AR	367	MSKCC	GRCh37	X	66942737	66942737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085359-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	77	367	0	ENST00000374690.3:c.2518G>T	p.Asp840Tyr	p.D840Y	ENST00000374690	NM_000044.3	840	Gat/Tat																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685297	86685297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085359-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	377	348	0	ENST00000274376.6:c.3013C>T	p.His1005Tyr	p.H1005Y	ENST00000274376	NM_002890.2	1005	Cat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0085359-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	191	292	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175825	176175825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085359-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	254	352	1	ENST00000367669.3:c.290C>T	p.Ala97Val	p.A97V	ENST00000367669	NM_022457.5	97	gCc/gTc																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379766	17379766	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085359-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	152	456	0	ENST00000359435.4:c.151G>T	p.Gly51Cys	p.G51C	ENST00000359435	NM_001033549.1	51	Ggt/Tgt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097630	8097634	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGG	GGCGG	A			P-0085359-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	101	324	0	ENST00000346208.3:c.12_16delinsA	p.Ala5ThrfsTer6	p.A5Tfs*6	ENST00000346208		4	acGGCGGac/acAac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0085385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	62	374	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636805	8636805	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1182822834		P-0085385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	99	528	0	ENST00000356435.5:c.104G>T	p.Gly35Val	p.G35V	ENST00000356435		35	gGg/gTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221341	1221341	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0085385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	57	631	0	ENST00000326873.7:c.862+2T>A		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																																
HGF	3082	MSKCC	GRCh37	7	81399271	81399271	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	71	531	0	ENST00000222390.5:c.17T>A	p.Leu6His	p.L6H	ENST00000222390	NM_000601.4	6	cTc/cAc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31388652	31388652	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	41	434	0	ENST00000328111.2:c.1917G>T	p.Trp639Cys	p.W639C	ENST00000328111	NM_006892.3	639	tgG/tgT																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279330	18279330	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	67	563	0	ENST00000222254.8:c.1782G>T	p.Trp594Cys	p.W594C	ENST00000222254	NM_005027.3	594	tgG/tgT																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0085394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	50	245	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0085394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	39	407	1	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
RB1	5925	MSKCC	GRCh37	13	48951156	48951156	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060503078		P-0085394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	23	188	0	ENST00000267163.4:c.1318G>A	p.Glu440Lys	p.E440K	ENST00000267163	NM_000321.2	440	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs864622237		P-0085394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	83	330	0	ENST00000269305.4:c.700T>G	p.Tyr234Asp	p.Y234D	ENST00000269305	NM_001126112.2	234	Tac/Gac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925318	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0085394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	72	277	0	ENST00000543371.1:c.1402_1403del	p.Lys468ValfsTer8	p.K468Vfs*8	ENST00000543371	NM_001198531.1	465	agAAaa/agaa																																																																															
HGF	3082	MSKCC	GRCh37	7	81374373	81374373	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	49	224	0	ENST00000222390.5:c.689A>T	p.Lys230Met	p.K230M	ENST00000222390	NM_000601.4	230	aAg/aTg																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61306439	61306439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868227362		P-0085394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	50	225	0	ENST00000341074.5:c.748G>A	p.Glu250Lys	p.E250K	ENST00000341074	NM_002974.2	250	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0085447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	2010	406	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0085448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	201	412	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508034	106508034	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	202	416	0	ENST00000359195.3:c.28G>T	p.Val10Leu	p.V10L	ENST00000359195	NM_002649.2	10	Gtg/Ttg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227729	36227729	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0085448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	84	525	0	ENST00000222270.7:c.7297+1G>T		p.X2433_splice	ENST00000222270	NM_014727.1	2433																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41101140	41101140	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0085448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	64	473	0	ENST00000373198.4:c.1216C>T	p.Gln406Ter	p.Q406*	ENST00000373198	NM_133170.3	406	Cag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110034	115110034	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	100	429	0	ENST00000257566.3:c.1844C>A	p.Ser615Tyr	p.S615Y	ENST00000257566	NM_016569.3	615	tCc/tAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230777	66230777	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	92	387	0	ENST00000273854.3:c.2194G>C	p.Asp732His	p.D732H	ENST00000273854	NM_004439.5	732	Gat/Cat																																																																															
JAK2	3717	MSKCC	GRCh37	9	5078414	5078414	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	176	343	0	ENST00000381652.3:c.2101G>T	p.Gly701Cys	p.G701C	ENST00000381652	NM_004972.3	701	Ggc/Tgc																																																																															
POT1	25913	MSKCC	GRCh37	7	124503657	124503657	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	90	393	0	ENST00000357628.3:c.293G>C	p.Ser98Thr	p.S98T	ENST00000357628	NM_015450.2	98	aGc/aCc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99172269	99172269	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0085448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	50	580	0	ENST00000074304.5:c.1835C>G	p.Thr612Arg	p.T612R	ENST00000074304	NM_001134224.1	612	aCa/aGa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41514553	41514553	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	89	381	0	ENST00000373198.4:c.108G>T	p.Glu36Asp	p.E36D	ENST00000373198	NM_133170.3	36	gaG/gaT																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62292834	62292834	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	T			P-0085448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	69	454	0	ENST00000482936.1:c.286G>T	p.Ala96Ser	p.A96S	ENST00000482936		96	Gct/Tct																																																																															
CD79A	973	MSKCC	GRCh37	19	42383102	42383102	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0085448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	84	332	0	ENST00000221972.3:c.122C>A	p.Ser41Ter	p.S41*	ENST00000221972	NM_021601.3	41	tCa/tAa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100594	8100594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	112	601	0	ENST00000346208.3:c.568C>A	p.Leu190Met	p.L190M	ENST00000346208		190	Ctg/Atg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741150	145741150	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0085448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	80	433	0	ENST00000428558.2:c.1256C>T	p.Pro419Leu	p.P419L	ENST00000428558	NM_004260.3	419	cCa/cTa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399201	139399201	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	65	449	0	ENST00000277541.6:c.4942G>T	p.Val1648Leu	p.V1648L	ENST00000277541	NM_017617.3	1648	Gtg/Ttg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730095	41730095	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	100	452	0	ENST00000242208.4:c.434G>T	p.Ser145Ile	p.S145I	ENST00000242208	NM_002192.2	145	aGt/aTt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004883	150004883	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	105	532	0	ENST00000253339.5:c.1342G>C	p.Gly448Arg	p.G448R	ENST00000253339		448	Ggg/Cgg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729786	41729786	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	159	487	0	ENST00000242208.4:c.743A>T	p.Gln248Leu	p.Q248L	ENST00000242208	NM_002192.2	248	cAg/cTg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21349180	21349180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	99	567	0	ENST00000215739.8:c.1807G>A	p.Val603Ile	p.V603I	ENST00000215739	NM_006767.3	603	Gta/Ata																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589831	69589831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	133	700	0	ENST00000168712.1:c.22G>T	p.Ala8Ser	p.A8S	ENST00000168712	NM_002007.2	8	Gcg/Tcg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560898	9560898	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767455314		P-0085451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	312	613	0	ENST00000353224.5:c.884C>T	p.Pro295Leu	p.P295L	ENST00000353224	NM_177990.2	295	cCg/cTg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519971		P-0085451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	17	462	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																															
CBL	867	MSKCC	GRCh37	11	119148943	119148943	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	146	383	0	ENST00000264033.4:c.1163A>T	p.Asp388Val	p.D388V	ENST00000264033	NM_005188.3	388	gAt/gTt																																																																															
MGA	23269	MSKCC	GRCh37	15	41988691	41988691	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0085451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	95	488	0	ENST00000219905.7:c.1483C>T	p.Arg495Ter	p.R495*	ENST00000219905	NM_001164273.1	495	Cga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110001	115110001	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	372	501	0	ENST00000257566.3:c.1877A>T	p.His626Leu	p.H626L	ENST00000257566	NM_016569.3	626	cAc/cTc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061277	38061282	+	inframe_deletion	In_Frame_Del	DEL	GCTTGT	GCTTGT	-			P-0085451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	268	607	0	ENST00000250448.2:c.707_712del	p.Asp236_Pro238delinsAla	p.D236_P238delinsA	ENST00000250448	NM_004496.3	236	gACAAGCcg/gcg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413921	139413921	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0085451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	206	458	0	ENST00000277541.6:c.839A>C	p.Asn280Thr	p.N280T	ENST00000277541	NM_017617.3	280	aAc/aCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0044034-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			83	35	121	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
KIT	3815	MSKCC	GRCh37	4	55595614	55595614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044034-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	81	209	0	ENST00000288135.5:c.2104C>T	p.Leu702Phe	p.L702F	ENST00000288135	NM_000222.2	702	Ctt/Ttt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27022913	27022938	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCGCCGCCAGCAGCCTGGGCAA	CCCGCCGCCGCCAGCAGCCTGGGCAA	-			P-0060224-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			92	190	179	0	ENST00000324856.7:c.31_56del	p.Ser11AlafsTer91	p.S11Afs*91	ENST00000324856	NM_006015.4	7	CCCGCCGCCGCCAGCAGCCTGGGCAAc/c																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118902	115118903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0060224-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			507	468	350	0	ENST00000257566.3:c.438dup	p.Ala147SerfsTer13	p.A147Sfs*13	ENST00000257566	NM_016569.3	146	-/A																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593478	48593479	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0067779-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			142	155	339	0	ENST00000342988.3:c.1231_1232del	p.Ser411LeufsTer17	p.S411Lfs*17	ENST00000342988	NM_005359.5	410	cAG/c																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719659	190719659	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs749568233		P-0067779-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			215	114	378	0	ENST00000441310.2:c.1661A>G	p.Asp554Gly	p.D554G	ENST00000441310	NM_000534.4	554	gAt/gGt																																																																															
MET	4233	MSKCC	GRCh37	7	116411875	116411892	+	intron_variant	Intron	DEL	CAAGCTCTTTCTTTCTCT	CAAGCTCTTTCTTTCTCT	-			P-0067779-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			170	210	540	0	ENST00000397752.3:c.2888-27_2888-10del		p.*963*	ENST00000397752	NM_000245.2																																																																																	
SETD2	29072	MSKCC	GRCh37	3	47098729	47098738	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTTGCTGG	GGGTTGCTGG	-			P-0067779-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			290	131	497	0	ENST00000409792.3:c.6536_6545del	p.Pro2179LeufsTer66	p.P2179Lfs*66	ENST00000409792	NM_014159.6	2179	cCCAGCAACCCt/ct																																																																															
SETD2	29072	MSKCC	GRCh37	3	47127736	47127736	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067779-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			280	143	377	0	ENST00000409792.3:c.5346G>A	p.Trp1782Ter	p.W1782*	ENST00000409792	NM_014159.6	1782	tgG/tgA																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239127	98239127	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067779-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			237	122	339	0	ENST00000331920.6:c.1516C>G	p.Leu506Val	p.L506V	ENST00000331920	NM_000264.3	506	Ctc/Gtc																																																																															
ATRX	546	MSKCC	GRCh37	X	76939858	76939858	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067779-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	133	395	0	ENST00000373344.5:c.890A>G	p.Lys297Arg	p.K297R	ENST00000373344	NM_000489.3	297	aAg/aGg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0075812-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			685	272	586	1	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170013729	170013729	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1389006052		P-0075812-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			370	182	282	0	ENST00000295797.4:c.1448G>A	p.Arg483His	p.R483H	ENST00000295797	NM_002740.5	483	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075812-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			258	199	241	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981618	63981618	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368917711		P-0075812-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			636	301	565	0	ENST00000295900.6:c.2120G>A	p.Arg707His	p.R707H	ENST00000295900	NM_000333.3	707	cGc/cAc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233207	46233207	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075812-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			458	259	396	0	ENST00000334344.6:c.1426C>T	p.Gln476Ter	p.Q476*	ENST00000334344	NM_152641.2	476	Caa/Taa																																																																															
SYK	6850	MSKCC	GRCh37	9	93627360	93627360	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075812-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			180	159	265	0	ENST00000375746.1:c.827T>C	p.Leu276Pro	p.L276P	ENST00000375746	NM_001174167.1	276	cTt/cCt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225343057	225343057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075812-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			331	150	297	0	ENST00000264414.4:c.2035G>A	p.Ala679Thr	p.A679T	ENST00000264414	NM_003590.4	679	Gcc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023597	27023631	+	frameshift_variant	Frame_Shift_Del	DEL	AGAGGTGGCACTCCGGGCTCCGGCGCGGCGGCGGC	AGAGGTGGCACTCCGGGCTCCGGCGCGGCGGCGGC	CCG			P-0075812-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			473	215	402	1	ENST00000324856.7:c.703_737delinsCCG	p.Arg235ProfsTer154	p.R235Pfs*154	ENST00000324856	NM_006015.4	235	AGAGGTGGCACTCCGGGCTCCGGCGCGGCGGCGGCt/CCGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576915	7576916	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0082264-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			639	154	440	0	ENST00000269305.4:c.930_931del	p.Asn310LysfsTer26	p.N310Kfs*26	ENST00000269305	NM_001126112.2	310	aaCAac/aaac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971035	21971035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082264-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			525	142	434	0	ENST00000304494.5:c.323A>G	p.Asp108Gly	p.D108G	ENST00000304494	NM_000077.4	108	gAt/gGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591977	48591977	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs377767354		P-0082264-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	108	303	0	ENST00000342988.3:c.1139+1G>A		p.X380_splice	ENST00000342988	NM_005359.5	380																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0082264-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			342	80	228	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0083393-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			238	111	489	0	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
FOXO1	2308	MSKCC	GRCh37	13	41134459	41134459	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756553520		P-0083393-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	76	461	0	ENST00000379561.5:c.1169C>T	p.Ser390Leu	p.S390L	ENST00000379561	NM_002015.3	390	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0083393-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			171	99	275	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604837	48604837	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0083393-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			212	30	353	0	ENST00000342988.3:c.1659A>G	p.Ter553TrpextTer40	p.*553Wext*40	ENST00000342988	NM_005359.5	553	tgA/tgG																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155249	55155249	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083393-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			301	78	416	0	ENST00000257290.5:c.2848G>T	p.Val950Leu	p.V950L	ENST00000257290	NM_006206.4	950	Gtg/Ttg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591809	48591810	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCC			P-0083393-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			260	9	446	0	ENST00000342988.3:c.973_975dup	p.Ser325dup	p.S325dup	ENST00000342988	NM_005359.5	325	-/TCC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0083740-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	13	226	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0083784-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			415	693	239	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0083784-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			390	696	404	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156735	20156735	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083784-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			334	178	221	0	ENST00000379607.5:c.22G>C	p.Gly8Arg	p.G8R	ENST00000379607	NM_001412.3	8	Gga/Cga																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056652	26056652	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083784-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			758	188	222	0	ENST00000343677.2:c.5C>G	p.Ser2Cys	p.S2C	ENST00000343677	NM_005319.3	2	tCc/tGc																																																																															
KDR	3791	MSKCC	GRCh37	4	55961830	55961830	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0083784-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			152	272	193	0	ENST00000263923.4:c.2731C>A	p.Pro911Thr	p.P911T	ENST00000263923	NM_002253.2	911	Cca/Aca																																																																															
MEN1	4221	MSKCC	GRCh37	11	64571855	64571855	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083784-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			1367	272	287	0	ENST00000337652.1:c.1799C>A	p.Pro600His	p.P600H	ENST00000337652	NM_130803.2	600	cCt/cAt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272525	15272525	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0083784-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			524	274	265	0	ENST00000263388.2:c.5914G>T	p.Glu1972Ter	p.E1972*	ENST00000263388	NM_000435.2	1972	Gag/Tag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850889	63850889	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0083784-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			679	249	374	0	ENST00000279873.7:c.1667T>A	p.Val556Asp	p.V556D	ENST00000279873	NM_032199.2	556	gTc/gAc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30676128	30676128	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0083784-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			927	268	323	0	ENST00000376406.3:c.2228del	p.Leu743GlnfsTer15	p.L743Qfs*15	ENST00000376406	NM_014641.2	743	cTa/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0084284-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			155	39	262	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577102	7577103	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGGA			P-0084284-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			285	74	444	0	ENST00000269305.4:c.831_835dup	p.Gly279ValfsTer68	p.G279Vfs*68	ENST00000269305	NM_001126112.2	279	ggg/gTCCTGgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0084664-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			281	20	196	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380268	25380268	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0084664-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			439	6	0	0	ENST00000256078.4:c.190T>G	p.Tyr64Asp	p.Y64D	ENST00000256078	NM_033360.2	64	Tac/Gac																																																																															
TERT	7015	MSKCC	GRCh37	5	1296020	1296020	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0084664-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			644	42	440	0				ENST00000310581	NM_198253.2																																																																																	
ERBB2	2064	MSKCC	GRCh37	17	37866065	37866065	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0084664-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			612	34	353	0	ENST00000269571.5:c.575-1G>T		p.X192_splice	ENST00000269571		192																																																																																
NPM1	4869	MSKCC	GRCh37	5	170837564	170837564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084871-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			122	11	85	0	ENST00000296930.5:c.880C>A	p.Leu294Ile	p.L294I	ENST00000296930	NM_002520.6	294	Ctt/Att																																																																															
ATM	472	MSKCC	GRCh37	11	108186749	108186749	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs786204141		P-0084871-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			605	63	441	0	ENST00000278616.4:c.6107A>G	p.Tyr2036Cys	p.Y2036C	ENST00000278616	NM_000051.3	2036	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0084871-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			313	48	290	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821544	72821544	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0084871-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			629	57	455	0	ENST00000268489.5:c.10631T>A	p.Leu3544Gln	p.L3544Q	ENST00000268489	NM_006885.3	3544	cTg/cAg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163306621	163306621	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084871-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	28	294	0	ENST00000271452.3:c.418G>C	p.Glu140Gln	p.E140Q	ENST00000271452	NM_145697.2	140	Gaa/Caa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412524	63412524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084871-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			645	40	431	0	ENST00000330258.3:c.643C>A	p.Pro215Thr	p.P215T	ENST00000330258	NM_152424.3	215	Ccc/Acc																																																																															
PHF6	84295	MSKCC	GRCh37	X	133559353	133559353	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084871-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			361	44	364	0	ENST00000332070.3:c.1091G>T	p.Gly364Val	p.G364V	ENST00000332070	NM_032458.2	364	gGa/gTa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356248	66356248	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202046693		P-0084903-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1076	97	447	0	ENST00000273854.3:c.1249C>T	p.Arg417Trp	p.R417W	ENST00000273854	NM_004439.5	417	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0084903-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	32	268	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
XIAP	331	MSKCC	GRCh37	X	123022504	123022504	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0084903-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	35	302	0	ENST00000355640.3:c.913G>T	p.Gly305Ter	p.G305*	ENST00000355640		305	Gga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578194	7578195	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0084903-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			889	79	453	0	ENST00000269305.4:c.653_654dup	p.Pro219CysfsTer29	p.P219Cfs*29	ENST00000269305	NM_001126112.2	218	-/TG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49442985	49442987	+	frameshift_variant	Frame_Shift_Del	DEL	AAA	AAA	T			P-0084903-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			771	65	398	0	ENST00000301067.7:c.3921_3923delinsA	p.Ser1307ArgfsTer17	p.S1307Rfs*17	ENST00000301067	NM_003482.3	1307	agTTTc/agAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876658483		P-0085049-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			296	45	485	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0085049-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	62	266	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960111	134960111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085049-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			264	32	478	0	ENST00000398015.3:c.2468G>T	p.Arg823Ile	p.R823I	ENST00000398015	NM_004441.4	823	aGa/aTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29588760	29588760	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085049-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			279	23	343	0	ENST00000358273.4:c.4609G>T	p.Asp1537Tyr	p.D1537Y	ENST00000358273	NM_001042492.2	1537	Gat/Tat																																																																															
KDR	3791	MSKCC	GRCh37	4	55963897	55963897	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085049-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			207	39	362	0	ENST00000263923.4:c.2546T>A	p.Ile849Asn	p.I849N	ENST00000263923	NM_002253.2	849	aTt/aAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295962	1295963	+	upstream_gene_variant	5'Flank	DEL	CA	CA	-			P-0085049-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	51	540	0				ENST00000310581	NM_198253.2																																																																																	
SOS1	6654	MSKCC	GRCh37	2	39278338	39278338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085049-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			186	13	361	1	ENST00000402219.2:c.811G>A	p.Asp271Asn	p.D271N	ENST00000402219	NM_005633.3	271	Gat/Aat																																																																															
MAX	4149	MSKCC	GRCh37	14	65544667	65544667	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085049-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			282	29	465	0	ENST00000358664.4:c.259G>T	p.Asp87Tyr	p.D87Y	ENST00000358664	NM_002382.4	87	Gac/Tac																																																																															
JAK3	3718	MSKCC	GRCh37	19	17952506	17952506	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0085049-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	43	504	0	ENST00000458235.1:c.927del	p.Gly310AlafsTer19	p.G310Afs*19	ENST00000458235	NM_000215.3	309	gtT/gt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100023	30100023	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085049-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	21	463	0	ENST00000331968.5:c.1597del	p.Glu533ArgfsTer2	p.E533Rfs*2	ENST00000331968	NM_002742.2	533	Gag/ag																																																																															
PGR	5241	MSKCC	GRCh37	11	100920672	100920672	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085049-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	13	283	0	ENST00000325455.5:c.2476C>A	p.Leu826Ile	p.L826I	ENST00000325455	NM_001202474.3	826	Ctt/Att																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50479318	50479319	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0085049-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			175	49	282	0	ENST00000394963.4:c.166_167delinsTT	p.Ala56Leu	p.A56L	ENST00000394963	NM_003076.4	56	GCg/TTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81346551	81346551	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085049-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			245	22	334	0	ENST00000222390.5:c.1402C>G	p.Arg468Gly	p.R468G	ENST00000222390	NM_000601.4	468	Cgt/Ggt																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61322942	61322942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085049-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			147	27	265	0	ENST00000283752.5:c.1122G>T	p.Arg374Ser	p.R374S	ENST00000283752	NM_006919.2	374	agG/agT																																																																															
APC	324	MSKCC	GRCh37	5	112175600	112175600	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0085169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	143	492	0	ENST00000257430.4:c.4312del	p.Thr1438HisfsTer35	p.T1438Hfs*35	ENST00000257430	NM_000038.5	1437	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0085169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	115	294	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
JAK3	3718	MSKCC	GRCh37	19	17951089	17951089	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750687910		P-0085169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	164	288	1	ENST00000458235.1:c.1204C>T	p.Arg402Cys	p.R402C	ENST00000458235	NM_000215.3	402	Cgc/Tgc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509556	106509556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	142	407	0	ENST00000359195.3:c.1550C>T	p.Ser517Phe	p.S517F	ENST00000359195	NM_002649.2	517	tCc/tTc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554669	63554669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	159	502	0	ENST00000307078.5:c.70C>T	p.Pro24Ser	p.P24S	ENST00000307078	NM_004655.3	24	Ccc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0085169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	113	268	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56434942	56434942	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	164	442	0	ENST00000407977.2:c.2195G>C	p.Arg732Pro	p.R732P	ENST00000407977		732	cGc/cCc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871205	35871205	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	77	327	0	ENST00000303115.3:c.427G>T	p.Ala143Ser	p.A143S	ENST00000303115	NM_002185.3	143	Gcc/Tcc																																																																															
EP300	2033	MSKCC	GRCh37	22	41523729	41523729	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	267	304	0	ENST00000263253.7:c.1145G>T	p.Cys382Phe	p.C382F	ENST00000263253	NM_001429.3	382	tGc/tTc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174395	11174395	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	23	331	0	ENST00000361445.4:c.7280T>G	p.Leu2427Arg	p.L2427R	ENST00000361445	NM_004958.3	2427	cTg/cGg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424070	47424071	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0085201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	200	430	0	ENST00000404338.3:c.2140_2141del	p.Leu714AlafsTer2	p.L714Afs*2	ENST00000404338	NM_004491.4	713	aCT/a																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212568845	212568845	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0085201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	85	270	0	ENST00000342788.4:c.1273G>T	p.Gly425Ter	p.G425*	ENST00000342788	NM_005235.2	425	Gga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0085202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	114	420	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0085202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	265	439	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0085202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	124	237	0	ENST00000288602.6:c.1742A>T	p.Asn581Ile	p.N581I	ENST00000288602	NM_004333.4	581	aAt/aTt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149516594	149516594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150173975		P-0085202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	154	339	1	ENST00000261799.4:c.17C>T	p.Ala6Val	p.A6V	ENST00000261799	NM_002609.3	6	gCg/gTg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88676897	88676897	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782682		P-0085202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	151	215	0	ENST00000372037.3:c.682C>T	p.Arg228Ter	p.R228*	ENST00000372037	NM_004329.2	228	Cga/Tga																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463308	25463308	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200018028		P-0085202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	226	382	0	ENST00000264709.3:c.2185C>T	p.Arg729Trp	p.R729W	ENST00000264709	NM_175629.2	729	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0085202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	130	238	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434991	49434991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	115	424	0	ENST00000301067.7:c.6562C>A	p.Arg2188Ser	p.R2188S	ENST00000301067	NM_003482.3	2188	Cgc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0085205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	381	367	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0085205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	297	380	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133793	41133793	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	50	314	0	ENST00000379561.5:c.1835G>T	p.Cys612Phe	p.C612F	ENST00000379561	NM_002015.3	612	tGt/tTt																																																																															
MPL	4352	MSKCC	GRCh37	1	43814975	43814975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	51	365	0	ENST00000372470.3:c.1510C>T	p.Leu504Phe	p.L504F	ENST00000372470	NM_005373.2	504	Ctc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0085213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	6	229	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0085232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	162	360	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0085232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	120	328	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276746	15276746	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	137	467	0	ENST00000263388.2:c.5519A>G	p.Glu1840Gly	p.E1840G	ENST00000263388	NM_000435.2	1840	gAg/gGg																																																																															
CDH1	999	MSKCC	GRCh37	16	68845677	68845678	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0085232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	126	412	0	ENST00000261769.5:c.924dup	p.Pro309SerfsTer2	p.P309Sfs*2	ENST00000261769	NM_004360.3	308	gat/gaTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29560110	29560110	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs199474741		P-0085232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	121	434	0	ENST00000358273.4:c.3587T>G	p.Leu1196Arg	p.L1196R	ENST00000358273	NM_001042492.2	1196	cTt/cGt																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165599	118165599	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779398843		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	63	529	0	ENST00000369448.3:c.109G>A	p.Gly37Arg	p.G37R	ENST00000369448	NM_017709.3	37	Gga/Aga																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150933333	150933333	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773137921		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	25	537	0	ENST00000271640.5:c.2795G>A	p.Arg932Gln	p.R932Q	ENST00000271640	NM_001145415.1	932	cGg/cAg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258436	16258436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	75	523	0	ENST00000375759.3:c.5701C>T	p.Arg1901Cys	p.R1901C	ENST00000375759	NM_015001.2	1901	Cgc/Tgc																																																																															
PARP1	142	MSKCC	GRCh37	1	226576415	226576415	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139232092		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	49	390	1	ENST00000366794.5:c.659C>T	p.Ala220Val	p.A220V	ENST00000366794	NM_001618.3	220	gCg/gTg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939043	36939043	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	36	533	0	ENST00000361632.4:c.666G>T	p.Met222Ile	p.M222I	ENST00000361632		222	atG/atT																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739824	46739824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764040025		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	63	438	0	ENST00000371975.4:c.1625G>A	p.Arg542His	p.R542H	ENST00000371975	NM_003579.3	542	cGc/cAc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	80	445	4	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784870	9784870	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142907633		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	92	375	0	ENST00000377346.4:c.2873G>A	p.Gly958Asp	p.G958D	ENST00000377346	NM_005026.3	958	gGc/gAc																																																																															
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	37	376	2	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																															
CBL	867	MSKCC	GRCh37	11	119155954	119155954	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs980503623		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	73	601	0	ENST00000264033.4:c.1619G>A	p.Arg540Gln	p.R540Q	ENST00000264033	NM_005188.3	540	cGa/cAa																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631128	69631128	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs558206333		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	91	495	0	ENST00000334134.2:c.284G>A	p.Arg95Gln	p.R95Q	ENST00000334134	NM_005247.2	95	cGg/cAg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631176	69631176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	70	418	0	ENST00000334134.2:c.236C>T	p.Thr79Met	p.T79M	ENST00000334134	NM_005247.2	79	aCg/aTg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77047151	77047151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	27	480	0	ENST00000356341.3:c.1393C>T	p.Leu465Phe	p.L465F	ENST00000356341	NM_002576.4	465	Ctc/Ttc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94192626	94192626	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781378		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	32	323	0	ENST00000323929.3:c.1448G>A	p.Arg483Gln	p.R483Q	ENST00000323929	NM_005591.3	483	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	49	300	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432651	49432651	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs727503983		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	109	595	0	ENST00000301067.7:c.8488C>T	p.Arg2830Ter	p.R2830*	ENST00000301067	NM_003482.3	2830	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	51	562	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434525	49434525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	86	547	0	ENST00000301067.7:c.7028C>T	p.Pro2343Leu	p.P2343L	ENST00000301067	NM_003482.3	2343	cCg/cTg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	498235	498235	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	25	335	0	ENST00000399788.2:c.23del	p.Gly8AlafsTer58	p.G8Afs*58	ENST00000399788	NM_001042603.1	8	gGc/gc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	30	415	2	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346314	73346314	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs575448022		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	48	355	0	ENST00000377767.4:c.1486G>A	p.Glu496Lys	p.E496K	ENST00000377767	NM_014953.3	496	Gaa/Aaa																																																																															
MGA	23269	MSKCC	GRCh37	15	42035256	42035256	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374543045		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	52	509	0	ENST00000219905.7:c.5098G>A	p.Val1700Met	p.V1700M	ENST00000219905	NM_001164273.1	1700	Gtg/Atg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434736	99434736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374358935		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	87	456	2	ENST00000268035.6:c.823C>T	p.Arg275Cys	p.R275C	ENST00000268035	NM_000875.3	275	Cgc/Tgc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121791	2121792	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	58	427	0	ENST00000219476.3:c.1959_1960del	p.Gly654LeufsTer2	p.G654Lfs*2	ENST00000219476	NM_000548.3	651	ccAGag/ccag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658541	3658541	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs757662453		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	99	468	2	ENST00000294008.3:c.425del	p.Gly142ValfsTer52	p.G142Vfs*52	ENST00000294008	NM_032444.2	142	gGt/gt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822008	72822009	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC	rs745803083		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	50	460	0	ENST00000268489.5:c.10164_10166dup	p.Gln3389dup	p.Q3389dup	ENST00000268489	NM_006885.3	3389	caa/caGCAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	79	543	3	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829643	72829643	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763494543		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	38	499	0	ENST00000268489.5:c.6938G>A	p.Arg2313His	p.R2313H	ENST00000268489	NM_006885.3	2313	cGt/cAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349640	89349641	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs772267579		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	54	500	9	ENST00000301030.4:c.3309dup	p.Asp1104ArgfsTer2	p.D1104Rfs*2	ENST00000301030	NM_001256183.1	1103	-/A																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453398	40453399	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs773909918		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	37	476	2	ENST00000345506.4:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000345506	NM_003152.3	365	-/C																																																																															
STAT3	6774	MSKCC	GRCh37	17	40474351	40474351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	47	501	0	ENST00000264657.5:c.2050G>A	p.Gly684Arg	p.G684R	ENST00000264657	NM_139276.2	684	Gga/Aga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	416	509	0	ENST00000407977.2:c.349del	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66526486	66526486	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772571340		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	114	451	0	ENST00000358598.2:c.1042G>A	p.Val348Ile	p.V348I	ENST00000358598	NM_212471.2	348	Gtt/Att																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7989402	7989402	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150641093		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	73	455	2	ENST00000319144.4:c.284G>A	p.Arg95His	p.R95H	ENST00000319144	NM_001139.2	95	cGt/cAt																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110129	8110130	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs745673717		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	103	471	0	ENST00000585124.1:c.475dup	p.Arg159ProfsTer15	p.R159Pfs*15	ENST00000585124	NM_004217.3	159	cgc/cCgc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10246949	10246949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	99	485	0	ENST00000340748.4:c.4456G>A	p.Asp1486Asn	p.D1486N	ENST00000340748		1486	Gac/Aac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271700	15271700	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	59	554	0	ENST00000263388.2:c.6739C>A	p.Pro2247Thr	p.P2247T	ENST00000263388	NM_000435.2	2247	Cca/Aca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271961	15271961	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	48	475	0	ENST00000263388.2:c.6478C>A	p.Leu2160Met	p.L2160M	ENST00000263388	NM_000435.2	2160	Ctg/Atg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18277972	18277972	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1193898416		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	110	355	0	ENST00000222254.8:c.1592G>A	p.Arg531His	p.R531H	ENST00000222254	NM_005027.3	531	cGc/cAc																																																																															
AXL	558	MSKCC	GRCh37	19	41727800	41727800	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	85	334	0	ENST00000301178.4:c.425T>C	p.Leu142Pro	p.L142P	ENST00000301178	NM_021913.4	142	cTg/cCg																																																																															
CIC	23152	MSKCC	GRCh37	19	42796619	42796619	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	33	503	0	ENST00000575354.2:c.3175+1G>A		p.X1059_splice	ENST00000575354	NM_015125.3	1059																																																																																
ARHGAP35	2909	MSKCC	GRCh37	19	47425432	47425432	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759708637		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	147	473	0	ENST00000404338.3:c.3500G>A	p.Arg1167Gln	p.R1167Q	ENST00000404338	NM_004491.4	1167	cGg/cAg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905960	50905960	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777944185		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	94	462	0	ENST00000440232.2:c.932G>A	p.Arg311His	p.R311H	ENST00000440232	NM_002691.3	311	cGc/cAc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	83	454	0	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5212209	5212209	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142364974		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	87	504	0	ENST00000357368.4:c.4822C>T	p.Arg1608Trp	p.R1608W	ENST00000357368	NM_002850.3	1608	Cgg/Tgg																																																																															
INSR	3643	MSKCC	GRCh37	19	7293878	7293878	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	113	471	0	ENST00000302850.5:c.25del	p.Ala9ArgfsTer56	p.A9Rfs*56	ENST00000302850	NM_000208.2	9	Gcg/cg																																																																															
BARD1	580	MSKCC	GRCh37	2	215645974	215645975	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs587780033		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	26	474	1	ENST00000260947.4:c.623dup	p.Lys209GlufsTer5	p.K209Efs*5	ENST00000260947	NM_000465.2	208	aag/aaAg																																																																															
INHA	3623	MSKCC	GRCh37	2	220439701	220439702	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	69	574	0	ENST00000243786.2:c.562_563del	p.Leu188AlafsTer22	p.L188Afs*22	ENST00000243786	NM_002191.3	185	gCT/g																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469633	25469633	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754459010		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	97	468	0	ENST00000264709.3:c.1135C>T	p.Arg379Cys	p.R379C	ENST00000264709	NM_175629.2	379	Cgc/Tgc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	29	537	4	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631744	67631744	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs914758392		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	33	490	1	ENST00000272342.5:c.1930G>A	p.Glu644Lys	p.E644K	ENST00000272342	NM_019002.3	644	Gaa/Aaa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022443	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-	rs750318549		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	99	532	0	ENST00000375687.4:c.1933_1934del	p.Gly645TrpfsTer12	p.G645Wfs*12	ENST00000375687	NM_015338.5	643	GGg/g																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31387093	31387093	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143300013		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	66	473	0	ENST00000328111.2:c.1718G>A	p.Arg573Gln	p.R573Q	ENST00000328111	NM_006892.3	573	cGg/cAg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44514891	44514891	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1392951313		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	60	403	0	ENST00000291552.4:c.356G>A	p.Arg119His	p.R119H	ENST00000291552	NM_006758.2	119	cGt/cAt																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21345925	21345925	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754364555		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	79	466	1	ENST00000215739.8:c.800G>A	p.Arg267His	p.R267H	ENST00000215739	NM_006767.3	267	cGc/cAc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29440867	29440867	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1188411932		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	80	328	0	ENST00000544604.2:c.733C>T	p.Arg245Ter	p.R245*	ENST00000544604	NM_001206998.1	245	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936096	178936096	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519940		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			73	20	237	0	ENST00000263967.3:c.1638G>T	p.Gln546His	p.Q546H	ENST00000263967	NM_006218.2	546	caG/caT																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155378	185155378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	54	394	0	ENST00000265026.3:c.619C>T	p.His207Tyr	p.H207Y	ENST00000265026	NM_004721.4	207	Cat/Tat																																																																															
TP63	8626	MSKCC	GRCh37	3	189526295	189526295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	175	529	0	ENST00000264731.3:c.559G>A	p.Ala187Thr	p.A187T	ENST00000264731	NM_003722.4	187	Gcc/Acc																																																																															
MST1	4485	MSKCC	GRCh37	3	49722761	49722761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			42	10	28	0	ENST00000449682.2:c.1478G>A	p.Arg493His	p.R493H	ENST00000449682	NM_020998.3	493	cGt/cAt																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	71	546	1	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
GAB1	2549	MSKCC	GRCh37	4	144381537	144381537	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1314151809		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	50	439	0	ENST00000262994.4:c.1705del	p.Arg569AspfsTer24	p.R569Dfs*24	ENST00000262994	NM_002039.3	567	tCc/tc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803120	1803120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1162571458		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	118	461	0	ENST00000260795.2:c.472C>T	p.Arg158Trp	p.R158W	ENST00000260795		158	Cgg/Tgg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957874	1957874	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1157864395		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	71	412	0	ENST00000382895.3:c.2840G>A	p.Arg947His	p.R947H	ENST00000382895	NM_133330.2	947	cGc/cAc																																																																															
TERT	7015	MSKCC	GRCh37	5	1254594	1254594	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35719940		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	70	316	0	ENST00000310581.5:c.3184G>A	p.Ala1062Thr	p.A1062T	ENST00000310581	NM_198253.2	1062	Gcc/Acc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056285	180056285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762045883		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	66	451	0	ENST00000261937.6:c.959G>A	p.Arg320Gln	p.R320Q	ENST00000261937	NM_182925.4	320	cGg/cAg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181839	56181839	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756966178		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	31	343	0	ENST00000399503.3:c.4063C>T	p.Arg1355Cys	p.R1355C	ENST00000399503	NM_005921.1	1355	Cgt/Tgt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564511	86564511	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	25	505	0	ENST00000274376.6:c.248del	p.Gly83GlufsTer4	p.G83Efs*4	ENST00000274376	NM_002890.2	81	ctG/ct																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519505	137519506	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs780346130		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	115	450	9	ENST00000367739.4:c.1132_1133del	p.Ser378PhefsTer6	p.S378Ffs*6	ENST00000367739	NM_000416.2	378	AGt/t																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864389	162864389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs577232474		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	60	379	0	ENST00000366898.1:c.124C>T	p.Arg42Cys	p.R42C	ENST00000366898	NM_004562.2	42	Cgt/Tgt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	32	395	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166742	32166742	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369417177		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	85	531	0	ENST00000375023.3:c.4496G>A	p.Arg1499Gln	p.R1499Q	ENST00000375023	NM_004557.3	1499	cGa/cAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140439695	140439695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776664982		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			38	10	161	0	ENST00000288602.6:c.2044C>T	p.Arg682Trp	p.R682W	ENST00000288602	NM_004333.4	682	Cgg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	44	550	1	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																																																															
HGF	3082	MSKCC	GRCh37	7	81374404	81374404	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1486090533		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	17	325	0	ENST00000222390.5:c.658C>T	p.Arg220Ter	p.R220*	ENST00000222390	NM_000601.4	220	Cga/Tga																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38273432	38273432	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1412996644		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	52	519	0	ENST00000425967.3:c.1903G>A	p.Ala635Thr	p.A635T	ENST00000425967	NM_001174067.1	635	Gcc/Acc																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127912061	127912061	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1481246558		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	34	422	0	ENST00000373547.4:c.809C>T	p.Ser270Leu	p.S270L	ENST00000373547	NM_002721.4	270	tCg/tTg																																																																															
ABL1	25	MSKCC	GRCh37	9	133759623	133759623	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	60	466	0	ENST00000318560.5:c.1950del	p.Leu651TrpfsTer43	p.L651Wfs*43	ENST00000318560	NM_005157.4	649	aCc/ac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395186	139395186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	123	514	0	ENST00000277541.6:c.5752G>A	p.Ala1918Thr	p.A1918T	ENST00000277541	NM_017617.3	1918	Gcc/Acc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882050	36882050	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	76	395	3	ENST00000358127.4:c.963del	p.Ala322LeufsTer11	p.A322Lfs*11	ENST00000358127	NM_001280556.1	321	ccC/cc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285704	87285704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	119	405	0	ENST00000277120.3:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000277120		14	cGg/cAg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	99	432	2	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
ATRX	546	MSKCC	GRCh37	X	76937287	76937287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			33	53	242	0	ENST00000373344.5:c.3461C>T	p.Ser1154Leu	p.S1154L	ENST00000373344	NM_000489.3	1154	tCa/tTa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11272863	11272863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	49	394	0	ENST00000361445.4:c.3388C>T	p.Pro1130Ser	p.P1130S	ENST00000361445	NM_004958.3	1130	Cca/Tca																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36934850	36934850	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	41	363	0	ENST00000361632.4:c.1483A>G	p.Arg495Gly	p.R495G	ENST00000361632		495	Agg/Ggg																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074362	8074363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	94	423	0	ENST00000377482.5:c.296dup	p.Ser100LysfsTer2	p.S100Kfs*2	ENST00000377482	NM_018948.3	99	cca/ccCa																																																																															
RET	5979	MSKCC	GRCh37	10	43606864	43606864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	63	612	0	ENST00000355710.3:c.1473G>T	p.Gln491His	p.Q491H	ENST00000355710	NM_020975.4	491	caG/caT																																																																															
TET1	80312	MSKCC	GRCh37	10	70411601	70411601	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			91	42	314	0	ENST00000373644.4:c.4277-2A>C		p.X1426_splice	ENST00000373644	NM_030625.2	1426																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118367078	118367078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	41	356	0	ENST00000534358.1:c.5660C>T	p.Ala1887Val	p.A1887V	ENST00000534358	NM_005933.3	1887	gCt/gTt																																																																															
WT1	7490	MSKCC	GRCh37	11	32456488	32456488	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1164390603		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	31	322	0	ENST00000332351.3:c.404C>T	p.Pro135Leu	p.P135L	ENST00000332351	NM_024426.4	135	cCg/cTg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	402240	402240	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	55	481	0	ENST00000399788.2:c.4551del	p.Phe1517LeufsTer11	p.F1517Lfs*11	ENST00000399788	NM_001042603.1	1517	ttT/tt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434913	110434913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	168	499	0	ENST00000375856.3:c.3488C>T	p.Pro1163Leu	p.P1163L	ENST00000375856	NM_003749.2	1163	cCg/cTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435442	110435443	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	115	455	0	ENST00000375856.3:c.2958dup	p.Lys987GlnfsTer4	p.K987Qfs*4	ENST00000375856	NM_003749.2	986	-/C																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133843	41133843	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	85	402	0	ENST00000379561.5:c.1785G>T	p.Gln595His	p.Q595H	ENST00000379561	NM_002015.3	595	caG/caT																																																																															
DIS3	22894	MSKCC	GRCh37	13	73345225	73345225	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	56	383	0	ENST00000377767.4:c.1664T>C	p.Val555Ala	p.V555A	ENST00000377767	NM_014953.3	555	gTg/gCg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346408	73346408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	25	282	0	ENST00000377767.4:c.1392G>A	p.Met464Ile	p.M464I	ENST00000377767	NM_014953.3	464	atG/atA																																																																															
KLF5	688	MSKCC	GRCh37	13	73636804	73636804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	158	528	0	ENST00000377687.4:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000377687	NM_001730.3	356	cCt/cTt																																																																															
AKT1	207	MSKCC	GRCh37	14	105241491	105241491	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	86	453	0	ENST00000349310.3:c.489G>T	p.Lys163Asn	p.K163N	ENST00000349310	NM_001014432.1	163	aaG/aaT																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873781	35873781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	150	344	0	ENST00000216797.5:c.70C>T	p.Arg24Trp	p.R24W	ENST00000216797	NM_020529.2	24	Cgg/Tgg																																																																															
MGA	23269	MSKCC	GRCh37	15	42042214	42042214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	53	468	0	ENST00000219905.7:c.6409G>A	p.Glu2137Lys	p.E2137K	ENST00000219905	NM_001164273.1	2137	Gaa/Aaa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223837	2223837	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	98	497	0	ENST00000326181.6:c.1135T>A	p.Ser379Thr	p.S379T	ENST00000326181	NM_032271.2	379	Tcc/Acc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831259	72831259	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	38	513	0	ENST00000268489.5:c.5322del	p.Thr1775ProfsTer8	p.T1775Pfs*8	ENST00000268489	NM_006885.3	1774	ccC/cc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81888139	81888139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	45	387	0	ENST00000359376.3:c.284G>A	p.Cys95Tyr	p.C95Y	ENST00000359376	NM_002661.3	95	tGc/tAc																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544428	86544428	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	113	434	0	ENST00000262426.4:c.253T>G	p.Phe85Val	p.F85V	ENST00000262426	NM_001451.2	85	Ttc/Gtc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89371668	89371668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	67	484	0	ENST00000301030.4:c.172C>T	p.Arg58Trp	p.R58W	ENST00000301030	NM_001256183.1	58	Cgg/Tgg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17125839	17125839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	21	473	0	ENST00000285071.4:c.755C>T	p.Ala252Val	p.A252V	ENST00000285071	NM_144997.5	252	gCg/gTg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41234486	41234486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	69	445	0	ENST00000357654.3:c.4292C>T	p.Ser1431Phe	p.S1431F	ENST00000357654	NM_007294.3	1431	tCc/tTc																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73775203	73775204	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs779064600		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	170	589	0	ENST00000254810.4:c.52dup	p.Arg18ProfsTer80	p.R18Pfs*80	ENST00000254810	NM_005324.3	18	cgc/cCgc																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61324640	61324640	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			56	16	321	0	ENST00000283752.5:c.476T>A	p.Ile159Asn	p.I159N	ENST00000283752	NM_006919.2	159	aTt/aAt																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881681	111881681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	74	467	0	ENST00000393256.3:c.359C>A	p.Pro120His	p.P120H	ENST00000393256	NM_006538.4	120	cCt/cAt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198270013	198270013	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	39	395	0	ENST00000335508.6:c.1423T>G	p.Phe475Val	p.F475V	ENST00000335508	NM_012433.2	475	Ttt/Gtt																																																																															
BARD1	580	MSKCC	GRCh37	2	215646192	215646192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			69	36	361	0	ENST00000260947.4:c.406G>A	p.Ala136Thr	p.A136T	ENST00000260947	NM_000465.2	136	Gca/Aca																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31386400	31386400	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	78	431	0	ENST00000328111.2:c.1625G>A	p.Trp542Ter	p.W542*	ENST00000328111	NM_006892.3	542	tGg/tAg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62293259	62293259	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	A	A	G			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	130	460	0	ENST00000482936.1:c.358A>G	p.Thr120Ala	p.T120A	ENST00000482936		120	Aca/Gca																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62322208	62322208	+	stop_gained,NMD_transcript_variant	Nonsense_Mutation	SNP	C	C	T			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	145	364	0	ENST00000482936.1:c.2464C>T	p.Gln822Ter	p.Q822*	ENST00000482936		822	Cag/Tag																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279840	29279846	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCCT	GCCGCCT	-			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	32	55	0	ENST00000544604.2:c.92_98del	p.Leu31ArgfsTer89	p.L31Rfs*89	ENST00000544604	NM_001206998.1	29	aGCCGCCTg/ag																																																																															
MST1R	4486	MSKCC	GRCh37	3	49924780	49924780	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750299816		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	106	500	0	ENST00000296474.3:c.4163G>A	p.Arg1388His	p.R1388H	ENST00000296474	NM_002447.2	1388	cGc/cAc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149456988	149456988	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs17855673		P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	36	480	0	ENST00000286301.3:c.740C>A	p.Pro247His	p.P247H	ENST00000286301	NM_005211.3	247	cCt/cAt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149499678	149499679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	53	292	0	ENST00000261799.4:c.2594dup	p.Leu865PhefsTer71	p.L865Ffs*71	ENST00000261799	NM_002609.3	865	ttg/ttTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180041157	180041157	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	80	594	0	ENST00000261937.6:c.3242T>G	p.Met1081Arg	p.M1081R	ENST00000261937	NM_182925.4	1081	aTg/aGg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177748	56177748	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	37	489	0	ENST00000399503.3:c.2723del	p.Leu908Ter	p.L908*	ENST00000399503	NM_005921.1	907	caT/ca																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753061	57753061	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	107	541	0	ENST00000274289.3:c.955C>A	p.Pro319Thr	p.P319T	ENST00000274289	NM_006622.3	319	Cca/Aca																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912328	29912328	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	77	465	0	ENST00000376809.5:c.947T>A	p.Val316Asp	p.V316D	ENST00000376809	NM_002116.7	316	gTt/gAt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324061	31324061	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	58	282	0	ENST00000412585.2:c.502C>T	p.Gln168Ter	p.Q168*	ENST00000412585	NM_005514.6	168	Cag/Tag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93955172	93955172	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	24	281	0	ENST00000369303.4:c.2727-1G>T		p.X909_splice	ENST00000369303	NM_004440.3	909																																																																																
POT1	25913	MSKCC	GRCh37	7	124532339	124532340	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	25	318	0	ENST00000357628.3:c.104dup	p.Tyr36IlefsTer7	p.Y36Ifs*7	ENST00000357628	NM_015450.2	35	cca/ccCa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741235	145741236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	173	532	0	ENST00000428558.2:c.1170_1171insA	p.Gly391ArgfsTer32	p.G391Rfs*32	ENST00000428558	NM_004260.3	390	-/A																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162219	38162219	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	27	416	0	ENST00000317025.8:c.2497A>G	p.Ile833Val	p.I833V	ENST00000317025	NM_023034.1	833	Att/Gtt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391755	139391755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	113	540	0	ENST00000277541.6:c.6436C>A	p.Leu2146Met	p.L2146M	ENST00000277541	NM_017617.3	2146	Ctg/Atg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045924	47045924	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	91	259	0	ENST00000329236.7:c.2488del	p.Val830SerfsTer16	p.V830Sfs*16	ENST00000329236	NM_001204466.1	829	Ggg/gg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741730	17741730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	15	416	0	ENST00000250003.3:c.401G>A	p.Arg134His	p.R134H	ENST00000250003	NM_002478.4	134	cGc/cAc																																																																															
KLF5	688	MSKCC	GRCh37	13	73636651	73636651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1104	772	603	0	ENST00000377687.4:c.914C>T	p.Pro305Leu	p.P305L	ENST00000377687	NM_001730.3	305	cCa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0085234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	153	563	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131691026		P-0085234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	315	505	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0085234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			57	51	326	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509619	106509619	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142822484		P-0085234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	78	492	0	ENST00000359195.3:c.1613C>T	p.Pro538Leu	p.P538L	ENST00000359195	NM_002649.2	538	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0085236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	84	404	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971107	21971107	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	79	422	0	ENST00000304494.5:c.251A>T	p.Asp84Val	p.D84V	ENST00000304494	NM_000077.4	84	gAc/gTc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112892398	112892398	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143433437		P-0085236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	99	322	0	ENST00000351677.2:c.556C>T	p.Arg186Trp	p.R186W	ENST00000351677	NM_002834.3	186	Cgg/Tgg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922049	39922049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	44	217	0	ENST00000378444.4:c.4123C>T	p.Arg1375Trp	p.R1375W	ENST00000378444	NM_001123385.1	1375	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211823	36211823	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1007147127		P-0085236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			766	132	441	0	ENST00000222270.7:c.1574G>A	p.Arg525Gln	p.R525Q	ENST00000222270	NM_014727.1	525	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0085236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	46	260	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906565	32906566	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0085236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	54	375	0	ENST00000380152.3:c.956dup	p.Asn319LysfsTer8	p.N319Kfs*8	ENST00000380152		317	aca/acAa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981665	70981665	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	42	416	0	ENST00000276594.2:c.431G>T	p.Cys144Phe	p.C144F	ENST00000276594	NM_024504.3	144	tGt/tTt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0085244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	47	343	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	61	450	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																															
APC	324	MSKCC	GRCh37	5	112137079	112137079	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0085244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	27	226	0	ENST00000257430.4:c.833del	p.Gln278ArgfsTer15	p.Q278Rfs*15	ENST00000257430	NM_000038.5	278	cAg/cg																																																																															
EP300	2033	MSKCC	GRCh37	22	41543869	41543869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	78	331	0	ENST00000263253.7:c.2160G>A	p.Met720Ile	p.M720I	ENST00000263253	NM_001429.3	720	atG/atA																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696438	47696438	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	106	350	0	ENST00000347630.2:c.385A>G	p.Lys129Glu	p.K129E	ENST00000347630	NM_001007230.1	129	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0085266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			52	174	358	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509256	106509256	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	223	369	0	ENST00000359195.3:c.1250del	p.Ser417IlefsTer13	p.S417Ifs*13	ENST00000359195	NM_002649.2	417	aGt/at																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0085275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	16	295	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0085275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	18	308	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0085277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	51	244	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578192	7578192	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	89	523	0	ENST00000269305.4:c.657del	p.Tyr220MetfsTer27	p.Y220Mfs*27	ENST00000269305	NM_001126112.2	219	ccC/cc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115745	8115745	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	88	474	0	ENST00000346208.3:c.1091G>C	p.Arg364Thr	p.R364T	ENST00000346208		364	aGa/aCa																																																																															
AR	367	MSKCC	GRCh37	X	66765853	66765853	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750324117		P-0085277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	19	538	0	ENST00000374690.3:c.865G>A	p.Glu289Lys	p.E289K	ENST00000374690	NM_000044.3	289	Gaa/Aaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945637	151945637	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	43	251	0	ENST00000262189.6:c.1882del	p.Leu628Ter	p.L628*	ENST00000262189	NM_170606.2	628	Ctg/tg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056405	180056405	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	31	442	0	ENST00000261937.6:c.839C>A	p.Pro280His	p.P280H	ENST00000261937	NM_182925.4	280	cCc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0085279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	88	554	1	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127698	64127706	+	inframe_deletion	In_Frame_Del	DEL	TGAAGGTGC	TGAAGGTGC	-			P-0085279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	30	469	0	ENST00000334205.4:c.193_201del	p.Lys65_Leu67del	p.K65_L67del	ENST00000334205	NM_003942.2	64	aTGAAGGTGCtg/atg																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793104	33793104	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	54	376	0	ENST00000498907.2:c.217T>G	p.Phe73Val	p.F73V	ENST00000498907	NM_004364.3	73	Ttc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0085282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	97	468	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0085282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	107	510	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0085282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	79	556	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112175288	112175288	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0085282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	142	560	0	ENST00000257430.4:c.3997A>T	p.Lys1333Ter	p.K1333*	ENST00000257430	NM_000038.5	1333	Aaa/Taa																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926888	112926888	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs397507546		P-0085282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	58	483	0	ENST00000351677.2:c.1508G>T	p.Gly503Val	p.G503V	ENST00000351677	NM_002834.3	503	gGg/gTg																																																																															
TP63	8626	MSKCC	GRCh37	3	189582162	189582162	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	109	552	0	ENST00000264731.3:c.721G>T	p.Val241Leu	p.V241L	ENST00000264731	NM_003722.4	241	Gtg/Ttg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120167	70120168	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAGT			P-0085282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	174	589	0	ENST00000245479.2:c.1172_1176dup	p.Gln393SerfsTer12	p.Q393Sfs*12	ENST00000245479	NM_000346.3	390	ggc/ggCCAGTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0085283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	150	384	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045533	47045533	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0085283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	137	572	0	ENST00000329236.7:c.2266A>T	p.Lys756Ter	p.K756*	ENST00000329236	NM_001204466.1	756	Aag/Tag																																																																															
ATRX	546	MSKCC	GRCh37	X	76939448	76939448	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	169	453	0	ENST00000373344.5:c.1300G>T	p.Val434Phe	p.V434F	ENST00000373344	NM_000489.3	434	Gtc/Ttc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47155495	47155495	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0085283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	142	344	0	ENST00000409792.3:c.4587-1G>T		p.X1529_splice	ENST00000409792	NM_014159.6	1529																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134920436	134920436	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	135	432	0	ENST00000398015.3:c.2251C>G	p.Leu751Val	p.L751V	ENST00000398015	NM_004441.4	751	Ctg/Gtg																																																																															
INSR	3643	MSKCC	GRCh37	19	7170683	7170683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	189	489	0	ENST00000302850.5:c.1348C>A	p.Gln450Lys	p.Q450K	ENST00000302850	NM_000208.2	450	Cag/Aag																																																																															
FANCC	2176	MSKCC	GRCh37	9	98011523	98011523	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	150	465	0	ENST00000289081.3:c.51G>C	p.Gln17His	p.Q17H	ENST00000289081	NM_000136.2	17	caG/caC																																																																															
SETD2	29072	MSKCC	GRCh37	3	47059230	47059230	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0085283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	129	429	0	ENST00000409792.3:c.7432-1G>C		p.X2478_splice	ENST00000409792	NM_014159.6	2478																																																																																
VEGFA	7422	MSKCC	GRCh37	6	43745330	43745330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	115	532	0	ENST00000523873.1:c.243G>A	p.Met81Ile	p.M81I	ENST00000523873		81	atG/atA																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012323	176012323	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0085283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	122	362	0	ENST00000367669.3:c.1611A>T	p.Lys537Asn	p.K537N	ENST00000367669	NM_022457.5	537	aaA/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578188	7578188	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs786201592		P-0085294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	431	501	0	ENST00000269305.4:c.661G>T	p.Glu221Ter	p.E221*	ENST00000269305	NM_001126112.2	221	Gag/Tag																																																																															
RB1	5925	MSKCC	GRCh37	13	48951171	48951171	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587778846		P-0085294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	138	209	0	ENST00000267163.4:c.1332+1G>A		p.X444_splice	ENST00000267163	NM_000321.2	444																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0085294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	447	253	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CTR9	9646	MSKCC	GRCh37	11	10785247	10785247	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	232	373	1	ENST00000361367.2:c.1015T>C	p.Ser339Pro	p.S339P	ENST00000361367	NM_014633.3	339	Tct/Cct																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0085295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	137	321	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0085295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	365	477	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578397	7578398	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0085295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	208	493	1	ENST00000269305.4:c.532dup	p.His178ProfsTer3	p.H178Pfs*3	ENST00000269305	NM_001126112.2	178	cac/cCac																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs794727798		P-0085295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	151	404	0	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265569	152265569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	157	398	0	ENST00000206249.3:c.1022C>T	p.Ser341Leu	p.S341L	ENST00000206249	NM_000125.3	341	tCg/tTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528910	157528910	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146468586		P-0085295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	192	397	0	ENST00000346085.5:c.6635G>A	p.Arg2212His	p.R2212H	ENST00000346085	NM_020732.3	2212	cGc/cAc																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33680061	33680061	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201406101		P-0085295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	112	284	0	ENST00000308377.4:c.2020C>T	p.Arg674Cys	p.R674C	ENST00000308377	NM_152270.3	674	Cgt/Tgt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061245	38061247	+	inframe_deletion	In_Frame_Del	DEL	CGG	CGG	-			P-0085296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	31	464	0	ENST00000250448.2:c.742_744del	p.Pro248del	p.P248del	ENST00000250448	NM_004496.3	248	CCG/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs967461896		P-0085301-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	84	491	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0085301-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	461	252	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753930	57753930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085301-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	43	387	0	ENST00000274289.3:c.694C>A	p.Pro232Thr	p.P232T	ENST00000274289	NM_006622.3	232	Ccc/Acc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096426	178096426	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085301-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	113	489	0	ENST00000397062.3:c.905C>G	p.Pro302Arg	p.P302R	ENST00000397062	NM_006164.4	302	cCt/cGt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138433450	138433450	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063503-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			149	28	324	0	ENST00000289153.2:c.1162G>C	p.Asp388His	p.D388H	ENST00000289153	NM_006219.2	388	Gat/Cat																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118363925	118363925	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0063503-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			112	95	194	0	ENST00000534358.1:c.5158C>T	p.Gln1720Ter	p.Q1720*	ENST00000534358	NM_005933.3	1720	Caa/Taa																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38591602	38591602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063503-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			133	56	280	0	ENST00000299084.4:c.61G>A	p.Val21Met	p.V21M	ENST00000299084	NM_152594.2	21	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0085129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	78	499	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265616	10265616	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767797868		P-0085129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	99	358	0	ENST00000340748.4:c.1561G>A	p.Asp521Asn	p.D521N	ENST00000340748		521	Gac/Aac																																																																															
RARA	5914	MSKCC	GRCh37	17	38506066	38506066	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	44	384	0	ENST00000254066.5:c.358A>G	p.Met120Val	p.M120V	ENST00000254066	NM_000964.3	120	Atg/Gtg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391655	139391655	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778571		P-0085129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	35	412	0	ENST00000277541.6:c.6536G>A	p.Arg2179Gln	p.R2179Q	ENST00000277541	NM_017617.3	2179	cGg/cAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118870	70118870	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs886041242		P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	132	368	0	ENST00000245479.2:c.442G>T	p.Glu148Ter	p.E148*	ENST00000245479	NM_000346.3	148	Gag/Tag																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652129	36652129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34916193		P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	108	324	0	ENST00000244741.5:c.251G>A	p.Arg84Gln	p.R84Q	ENST00000244741	NM_000389.4	84	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs587782289		P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	223	283	0	ENST00000269305.4:c.706T>G	p.Tyr236Asp	p.Y236D	ENST00000269305	NM_001126112.2	236	Tac/Gac																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754304	57754304	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	127	340	0	ENST00000274289.3:c.547C>T	p.Arg183Ter	p.R183*	ENST00000274289	NM_006622.3	183	Cga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521716	89521716	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	92	271	0	ENST00000336596.2:c.2793C>G	p.Ile931Met	p.I931M	ENST00000336596	NM_005233.5	931	atC/atG																																																																															
ATRX	546	MSKCC	GRCh37	X	76872192	76872192	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	53	216	0	ENST00000373344.5:c.5455G>C	p.Asp1819His	p.D1819H	ENST00000373344	NM_000489.3	1819	Gat/Cat																																																																															
CDH1	999	MSKCC	GRCh37	16	68844139	68844139	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	253	306	0	ENST00000261769.5:c.727G>T	p.Glu243Ter	p.E243*	ENST00000261769	NM_004360.3	243	Gag/Tag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67670670	67670670	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1314705510		P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	96	306	0	ENST00000264010.4:c.1915C>G	p.Gln639Glu	p.Q639E	ENST00000264010	NM_006565.3	639	Cag/Gag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509523	106509523	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	129	341	2	ENST00000359195.3:c.1517C>G	p.Thr506Ser	p.T506S	ENST00000359195	NM_002649.2	506	aCt/aGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088697	27088697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	272	286	0	ENST00000324856.7:c.2306C>T	p.Ser769Leu	p.S769L	ENST00000324856	NM_006015.4	769	tCa/tTa																																																																															
ATM	472	MSKCC	GRCh37	11	108170545	108170545	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	76	239	0	ENST00000278616.4:c.5110G>T	p.Glu1704Ter	p.E1704*	ENST00000278616	NM_000051.3	1704	Gaa/Taa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21630748	21630748	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	156	269	0	ENST00000421138.2:c.856C>G	p.Leu286Val	p.L286V	ENST00000421138		286	Cta/Gta																																																																															
CTR9	9646	MSKCC	GRCh37	11	10773002	10773002	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	131	141	0	ENST00000361367.2:c.43G>C	p.Glu15Gln	p.E15Q	ENST00000361367	NM_014633.3	15	Gag/Cag																																																																															
KDR	3791	MSKCC	GRCh37	4	55946259	55946259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	136	355	0	ENST00000263923.4:c.3920C>A	p.Ser1307Tyr	p.S1307Y	ENST00000263923	NM_002253.2	1307	tCc/tAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952093	178952094	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCTGGACAACAAAAATGGATTGGATCTTCCACACAATTAAACAGA			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			841	337	294	0	ENST00000263967.3:c.3192_3193insAGCTGGACAACAAAAATGGATTGGATCTTCCACACAATTAAACAG	p.Gln1064_His1065insSerTrpThrThrLysMetAspTrpIlePheHisThrIleLysGln	p.Q1064_H1065insSWTTKMDWIFHTIKQ	ENST00000263967	NM_006218.2	1050	ggc/gGCTGGACAACAAAAATGGATTGGATCTTCCACACAATTAAACAGAgc																																																																															
POLE	5426	MSKCC	GRCh37	12	133219161	133219161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	132	287	0	ENST00000320574.5:c.4883G>A	p.Gly1628Glu	p.G1628E	ENST00000320574	NM_006231.2	1628	gGa/gAa																																																																															
CIC	23152	MSKCC	GRCh37	19	42791810	42791810	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			744	162	383	0	ENST00000575354.2:c.696G>C	p.Lys232Asn	p.K232N	ENST00000575354	NM_015125.3	232	aaG/aaC																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644949	67644949	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	120	350	0	ENST00000264010.4:c.214C>T	p.Gln72Ter	p.Q72*	ENST00000264010	NM_006565.3	72	Cag/Tag																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801518	1801518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	110	305	0	ENST00000260795.2:c.424G>A	p.Glu142Lys	p.E142K	ENST00000260795		142	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49423243	49423243	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	465	296	1	ENST00000301067.7:c.14016G>C	p.Lys4672Asn	p.K4672N	ENST00000301067	NM_003482.3	4672	aaG/aaC																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070386	37070386	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	119	266	0	ENST00000231790.2:c.1521G>C	p.Leu507Phe	p.L507F	ENST00000231790	NM_000249.3	507	ttG/ttC																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971357	13971357	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	97	325	0	ENST00000405192.2:c.572C>G	p.Ser191Cys	p.S191C	ENST00000405192	NM_001163147.1	191	tCt/tGt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801494	1801494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	98	316	1	ENST00000260795.2:c.400G>A	p.Asp134Asn	p.D134N	ENST00000260795		134	Gac/Aac																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281297	49281297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	127	365	0	ENST00000282018.3:c.344C>T	p.Ser115Phe	p.S115F	ENST00000282018	NM_020377.2	115	tCt/tTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29684314	29684314	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	156	288	0	ENST00000358273.4:c.7897G>T	p.Glu2633Ter	p.E2633*	ENST00000358273	NM_001042492.2	2633	Gag/Tag																																																																															
STK40	83931	MSKCC	GRCh37	1	36809722	36809722	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	83	245	0	ENST00000373129.3:c.883G>C	p.Glu295Gln	p.E295Q	ENST00000373129	NM_032017.1	295	Gag/Cag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44950074	44950074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	76	230	0	ENST00000377967.4:c.3843C>G	p.Ile1281Met	p.I1281M	ENST00000377967	NM_021140.2	1281	atC/atG																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561268	9561268	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	132	334	0	ENST00000353224.5:c.514G>T	p.Val172Leu	p.V172L	ENST00000353224	NM_177990.2	172	Gta/Tta																																																																															
SESN3	143686	MSKCC	GRCh37	11	94918452	94918452	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	38	261	0	ENST00000536441.1:c.730G>C	p.Glu244Gln	p.E244Q	ENST00000536441	NM_144665.3	244	Gag/Cag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0085133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	257	366	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0085133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	202	512	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174091	112174094	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0085133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	71	374	0	ENST00000257430.4:c.2802_2805del	p.Tyr935IlefsTer19	p.Y935Ifs*19	ENST00000257430	NM_000038.5	934	ACTTac/ac																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0085133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	135	401	0	ENST00000257430.4:c.4473del	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934602	9934602	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397518470		P-0085133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	66	340	0	ENST00000330684.3:c.1553G>A	p.Arg518His	p.R518H	ENST00000330684	NM_001134407.1	518	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0085133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	51	218	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EP300	2033	MSKCC	GRCh37	22	41574619	41574622	+	frameshift_variant	Frame_Shift_Del	DEL	TCTC	TCTC	-			P-0085133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	102	551	0	ENST00000263253.7:c.6908_6911del	p.Leu2303ProfsTer49	p.L2303Pfs*49	ENST00000263253	NM_001429.3	2302	TCTCtc/tc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0085159-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	121	170	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
SMYD3	64754	MSKCC	GRCh37	1	245912867	245912867	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0085159-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	69	213	0	ENST00000388985.4:c.1285T>C	p.Ter429GlnextTer?	p.*429Qext*?	ENST00000388985		429	Taa/Caa																																																																															
RIT1	6016	MSKCC	GRCh37	1	155870180	155870181	+	frameshift_variant,stop_lost	Frame_Shift_Ins	INS	-	-	A			P-0085159-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	67	185	0	ENST00000368323.3:c.658dup	p.Ter220LeufsTer21	p.*220Lfs*21	ENST00000368323	NM_006912.5	220	tga/tTga																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719619	190719619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085159-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	59	257	0	ENST00000441310.2:c.1621C>T	p.Leu541Phe	p.L541F	ENST00000441310	NM_000534.4	541	Ctt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	226	379	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444492	50444492	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	168	389	0	ENST00000331340.3:c.421+1G>T		p.X141_splice	ENST00000331340	NM_006060.4	141																																																																																
MUTYH	4595	MSKCC	GRCh37	1	45799143	45799143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755653922		P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	96	468	0	ENST00000372115.3:c.248G>A	p.Arg83Gln	p.R83Q	ENST00000372115	NM_001048171.1	83	cGa/cAa																																																																															
MGA	23269	MSKCC	GRCh37	15	42000307	42000307	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	153	275	0	ENST00000219905.7:c.2326G>T	p.Gly776Ter	p.G776*	ENST00000219905	NM_001164273.1	776	Gga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431834	49431834	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	95	440	0	ENST00000301067.7:c.9305del	p.Pro3102LeufsTer17	p.P3102Lfs*17	ENST00000301067	NM_003482.3	3102	cCt/ct																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066534	94066534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1402331883		P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	166	414	0	ENST00000369303.4:c.1225G>T	p.Ala409Ser	p.A409S	ENST00000369303	NM_004440.3	409	Gct/Tct																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056237	26056245	+	inframe_deletion	In_Frame_Del	DEL	CTTCTTGGG	CTTCTTGGG	-	rs749190253		P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			824	95	455	0	ENST00000343677.2:c.412_420del	p.Pro138_Lys140del	p.P138_K140del	ENST00000343677	NM_005319.3	138	CCCAAGAAG/-																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434993	49434993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	85	433	0	ENST00000301067.7:c.6560C>T	p.Pro2187Leu	p.P2187L	ENST00000301067	NM_003482.3	2187	cCc/cTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188779	32188779	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			736	86	532	0	ENST00000375023.3:c.775T>C	p.Phe259Leu	p.F259L	ENST00000375023	NM_004557.3	259	Ttt/Ctt																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631355	67631355	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	149	398	0	ENST00000272342.5:c.1541C>G	p.Ser514Cys	p.S514C	ENST00000272342	NM_019002.3	514	tCt/tGt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478819	56478819	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			736	101	322	0	ENST00000267101.3:c.275A>G	p.Asn92Ser	p.N92S	ENST00000267101	NM_001982.3	92	aAt/aGt																																																																															
BTK	695	MSKCC	GRCh37	X	100608340	100608340	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	57	131	0	ENST00000308731.7:c.1751-1G>T		p.X584_splice	ENST00000308731	NM_000061.2	584																																																																																
TCEB1	6921	MSKCC	GRCh37	8	74858954	74858954	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	89	246	0	ENST00000518127.1:c.250A>T	p.Thr84Ser	p.T84S	ENST00000518127	NM_001204857.1	84	Act/Tct																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347741	347741	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	83	378	0	ENST00000262320.3:c.1765A>T	p.Ser589Cys	p.S589C	ENST00000262320	NM_003502.3	589	Agt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993012	72993012	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	85	452	0	ENST00000268489.5:c.1033A>G	p.Lys345Glu	p.K345E	ENST00000268489	NM_006885.3	345	Aaa/Gaa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251854	212251854	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			699	71	408	0	ENST00000342788.4:c.3205G>T	p.Gly1069Ter	p.G1069*	ENST00000342788	NM_005235.2	1069	Gga/Tga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627383	37627383	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			738	202	437	0	ENST00000447079.4:c.1298G>T	p.Ser433Ile	p.S433I	ENST00000447079	NM_015083.1	433	aGt/aTt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18491389	18491390	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	66	280	0	ENST00000266497.5:c.1303_1304insCA	p.Lys435ThrfsTer8	p.K435Tfs*8	ENST00000266497		434	-/AC																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18473948	18473948	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	48	264	0	ENST00000266497.5:c.1190A>T	p.His397Leu	p.H397L	ENST00000266497		397	cAt/cTt																																																																															
APLNR	187	MSKCC	GRCh37	11	57003550	57003550	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	T			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			777	119	463	0	ENST00000257254.3:c.929C>A	p.Ala310Asp	p.A310D	ENST00000257254		310	gCc/gAc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424728	47424728	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	204	447	0	ENST00000404338.3:c.2796G>T	p.Glu932Asp	p.E932D	ENST00000404338	NM_004491.4	932	gaG/gaT																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450344	50450344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	178	467	0	ENST00000331340.3:c.528C>G	p.His176Gln	p.H176Q	ENST00000331340	NM_006060.4	176	caC/caG																																																																															
SYK	6850	MSKCC	GRCh37	9	93650876	93650876	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	69	293	0	ENST00000375746.1:c.1802T>C	p.Met601Thr	p.M601T	ENST00000375746	NM_001174167.1	601	aTg/aCg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539872	187539872	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	110	415	0	ENST00000441802.2:c.7868C>A	p.Ala2623Asp	p.A2623D	ENST00000441802	NM_005245.3	2623	gCc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434916	49434916	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	101	457	0	ENST00000301067.7:c.6637G>T	p.Gly2213Cys	p.G2213C	ENST00000301067	NM_003482.3	2213	Ggc/Tgc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934536	9934536	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	87	332	0	ENST00000330684.3:c.1619G>T	p.Ser540Ile	p.S540I	ENST00000330684	NM_001134407.1	540	aGt/aTt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552682	18552682	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	191	481	0	ENST00000266497.5:c.2093C>A	p.Ala698Asp	p.A698D	ENST00000266497		698	gCc/gAc																																																																															
TP63	8626	MSKCC	GRCh37	3	189526304	189526304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			753	131	447	1	ENST00000264731.3:c.568G>A	p.Ala190Thr	p.A190T	ENST00000264731	NM_003722.4	190	Gcc/Acc																																																																															
TET1	80312	MSKCC	GRCh37	10	70404844	70404844	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	99	363	0	ENST00000373644.4:c.2358G>T	p.Leu786Phe	p.L786F	ENST00000373644	NM_030625.2	786	ttG/ttT																																																																															
NF1	4763	MSKCC	GRCh37	17	29684388	29684388	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	225	298	0	ENST00000358273.4:c.7970+1G>T		p.X2657_splice	ENST00000358273	NM_001042492.2	2657																																																																																
SETD2	29072	MSKCC	GRCh37	3	47129667	47129667	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	96	334	0	ENST00000409792.3:c.5213T>A	p.Leu1738Ter	p.L1738*	ENST00000409792	NM_014159.6	1738	tTa/tAa																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206649598	206649598	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	169	513	0	ENST00000367120.3:c.433G>T	p.Val145Leu	p.V145L	ENST00000367120	NM_014002.3	145	Gta/Tta																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627979	37627979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			823	93	478	0	ENST00000447079.4:c.1894C>T	p.Leu632Phe	p.L632F	ENST00000447079	NM_015083.1	632	Ctc/Ttc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285748	87285748	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	78	440	0	ENST00000277120.3:c.85G>T	p.Ala29Ser	p.A29S	ENST00000277120		29	Gct/Tct																																																																															
WT1	7490	MSKCC	GRCh37	11	32456661	32456661	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	43	261	0	ENST00000332351.3:c.231C>A	p.Asn77Lys	p.N77K	ENST00000332351	NM_024426.4	77	aaC/aaA																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212568844	212568844	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	50	348	0	ENST00000342788.4:c.1274del	p.Gly425GlufsTer26	p.G425Efs*26	ENST00000342788	NM_005235.2	425	gGa/ga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881392	37881392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0085176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	60	492	0	ENST00000269571.5:c.2584A>G	p.Thr862Ala	p.T862A	ENST00000269571		862	Aca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578499	7578499	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs786203071		P-0085176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	100	519	0	ENST00000269305.4:c.431A>C	p.Gln144Pro	p.Q144P	ENST00000269305	NM_001126112.2	144	cAg/cCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0085176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	49	265	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845693	151845693	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	104	496	0	ENST00000262189.6:c.13319A>G	p.Tyr4440Cys	p.Y4440C	ENST00000262189	NM_170606.2	4440	tAt/tGt																																																																															
HGF	3082	MSKCC	GRCh37	7	81346614	81346614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	78	384	0	ENST00000222390.5:c.1339G>A	p.Ala447Thr	p.A447T	ENST00000222390	NM_000601.4	447	Gct/Act																																																																															
MGA	23269	MSKCC	GRCh37	15	42019537	42019537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	39	465	0	ENST00000219905.7:c.3590C>T	p.Thr1197Ile	p.T1197I	ENST00000219905	NM_001164273.1	1197	aCt/aTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0085212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	69	248	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152055756	152055756	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1283285486		P-0085212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	43	159	0	ENST00000262189.6:c.166C>T	p.Arg56Ter	p.R56*	ENST00000262189	NM_170606.2	56	Cga/Tga																																																																															
HRAS	3265	MSKCC	GRCh37	11	534318	534318	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1447218022		P-0085212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	20	224	0	ENST00000311189.7:c.5C>T	p.Thr2Met	p.T2M	ENST00000311189		2	aCg/aTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56174927	56174943	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTAAGGCTTTATTGA	AGGTAAGGCTTTATTGA	C			P-0085212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	75	215	0	ENST00000399503.3:c.2086_2087+15delinsC		p.X696_splice	ENST00000399503	NM_005921.1	696																																																																																
CXCR4	7852	MSKCC	GRCh37	2	136872450	136872450	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1344271734		P-0085215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	62	292	0	ENST00000241393.3:c.1048C>T	p.His350Tyr	p.H350Y	ENST00000241393	NM_003467.2	350	Cac/Tac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431060	49431074	+	inframe_deletion	In_Frame_Del	DEL	TGCCCACTTAGCATA	TGCCCACTTAGCATA	-			P-0085215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			760	71	389	0	ENST00000301067.7:c.10065_10079del	p.His3355_Gly3359del	p.H3355_G3359del	ENST00000301067	NM_003482.3	3355	caTATGCTAAGTGGGCAg/cag																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50488218	50488218	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0085215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	111	282	0	ENST00000394963.4:c.1134-2A>T		p.X378_splice	ENST00000394963	NM_003076.4	378																																																																																
GNAQ	2776	MSKCC	GRCh37	9	80412454	80412454	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0085215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	70	309	0	ENST00000286548.4:c.587T>G	p.Leu196Ter	p.L196*	ENST00000286548	NM_002072.3	196	tTa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0084358-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			215	162	343	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0084358-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	239	299	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
RB1	5925	MSKCC	GRCh37	13	48919331	48919331	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1131690874		P-0084358-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			113	336	222	0	ENST00000267163.4:c.496G>T	p.Glu166Ter	p.E166*	ENST00000267163	NM_000321.2	166	Gaa/Taa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53244011	53244011	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377276125		P-0084358-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			75	264	183	0	ENST00000375401.3:c.982C>T	p.Arg328Trp	p.R328W	ENST00000375401	NM_004187.3	328	Cgg/Tgg																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799445	72799445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084358-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			162	181	303	0	ENST00000325599.8:c.1724C>T	p.Pro575Leu	p.P575L	ENST00000325599	NM_018130.2	575	cCa/cTa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907395	32907395	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0084358-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			555	152	327	0	ENST00000380152.3:c.1780A>G	p.Ile594Val	p.I594V	ENST00000380152		594	Ata/Gta																																																																															
CASP8	841	MSKCC	GRCh37	2	202151316	202151316	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	41	296	0	ENST00000358485.4:c.1616G>C	p.Ter539SerextTer88	p.*539Sext*88	ENST00000358485	NM_001080125.1	539	tGa/tCa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52443892	52443892	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			784	69	392	0	ENST00000460680.1:c.3G>A	p.Met1?	p.M1?	ENST00000460680	NM_004656.3	1	atG/atA																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226021	53226021	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781785252		P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			714	71	399	0	ENST00000375401.3:c.2828G>A	p.Arg943Gln	p.R943Q	ENST00000375401	NM_004187.3	943	cGa/cAa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121909229		P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	68	275	0	ENST00000371953.3:c.389G>T	p.Arg130Leu	p.R130L	ENST00000371953	NM_000314.4	130	cGa/cTa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610554	81610554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	109	383	0	ENST00000298171.2:c.2152G>A	p.Asp718Asn	p.D718N	ENST00000298171	NM_000369.2	718	Gat/Aat																																																																															
RAD52	5893	MSKCC	GRCh37	12	1042200	1042200	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			749	58	327	0	ENST00000358495.3:c.25C>G	p.Leu9Val	p.L9V	ENST00000358495	NM_134424.2	9	Ctt/Gtt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883158	37883158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	50	343	0	ENST00000269571.5:c.3061G>A	p.Glu1021Lys	p.E1021K	ENST00000269571		1021	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			907	69	408	0	ENST00000269305.4:c.472del	p.Arg158AlafsTer12	p.R158Afs*12	ENST00000269305	NM_001126112.2	158	Cgc/gc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30321730	30321730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	37	275	1	ENST00000322652.5:c.1585C>A	p.Leu529Ile	p.L529I	ENST00000322652	NM_015355.2	529	Ctt/Att																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55154999	55154999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	63	335	0	ENST00000257290.5:c.2708C>T	p.Ser903Phe	p.S903F	ENST00000257290	NM_006206.4	903	tCt/tTt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020396	69020396	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	95	337	0	ENST00000288368.4:c.2768C>G	p.Ser923Cys	p.S923C	ENST00000288368	NM_024870.2	923	tCt/tGt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16264380	16264380	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	57	359	0	ENST00000375759.3:c.10583C>G	p.Ser3528Cys	p.S3528C	ENST00000375759	NM_015001.2	3528	tCt/tGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29550464	29550464	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	37	283	0	ENST00000358273.4:c.1724C>G	p.Ser575Ter	p.S575*	ENST00000358273	NM_001042492.2	575	tCa/tGa																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78426128	78426128	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	70	371	0	ENST00000370768.2:c.1397C>G	p.Pro466Arg	p.P466R	ENST00000370768	NM_003902.3	466	cCa/cGa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508246	106508246	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			929	66	404	0	ENST00000359195.3:c.240G>T	p.Glu80Asp	p.E80D	ENST00000359195	NM_002649.2	80	gaG/gaT																																																																															
XIAP	331	MSKCC	GRCh37	X	123034443	123034444	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	27	266	0	ENST00000355640.3:c.1200_1201delinsCT	p.Gly401Trp	p.G401W	ENST00000355640		400	tcTGgg/tcCTgg																																																																															
CTR9	9646	MSKCC	GRCh37	11	10785047	10785047	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	48	320	0	ENST00000361367.2:c.919G>T	p.Glu307Ter	p.E307*	ENST00000361367	NM_014633.3	307	Gag/Tag																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30323864	30323864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	48	268	0	ENST00000322652.5:c.1842G>C	p.Met614Ile	p.M614I	ENST00000322652	NM_015355.2	614	atG/atC																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504426	186504429	+	frameshift_variant	Frame_Shift_Del	DEL	GAGA	GAGA	-			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	46	279	0	ENST00000323963.5:c.768_771del	p.Glu257AsnfsTer14	p.E257Nfs*14	ENST00000323963		255	GAGAga/ga																																																																															
MDM2	4193	MSKCC	GRCh37	12	69203016	69203016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	48	300	0	ENST00000462284.1:c.43C>T	p.Pro15Ser	p.P15S	ENST00000462284	NM_002392.5	15	Cct/Tct																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186503961	186503961	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	61	324	0	ENST00000323963.5:c.526T>A	p.Trp176Arg	p.W176R	ENST00000323963		176	Tgg/Agg																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61322947	61322947	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	23	279	0	ENST00000283752.5:c.1117A>G	p.Ile373Val	p.I373V	ENST00000283752	NM_006919.2	373	Ata/Gta																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46268417	46268417	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	80	362	0	ENST00000371998.3:c.2804C>G	p.Ser935Ter	p.S935*	ENST00000371998		935	tCa/tGa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87482344	87482344	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	48	355	0	ENST00000277120.3:c.1631C>A	p.Thr544Lys	p.T544K	ENST00000277120		544	aCa/aAa																																																																															
IRF4	3662	MSKCC	GRCh37	6	407494	407494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	56	287	0	ENST00000380956.4:c.1252C>G	p.Gln418Glu	p.Q418E	ENST00000380956	NM_001195286.1	418	Caa/Gaa																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156737	20156737	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	40	248	0	ENST00000379607.5:c.20A>T	p.Lys7Ile	p.K7I	ENST00000379607	NM_001412.3	7	aAa/aTa																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30323844	30323844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	46	264	0	ENST00000322652.5:c.1822G>A	p.Glu608Lys	p.E608K	ENST00000322652	NM_015355.2	608	Gaa/Aaa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933493	39933493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			878	76	479	0	ENST00000378444.4:c.1106C>T	p.Ser369Leu	p.S369L	ENST00000378444	NM_001123385.1	369	tCa/tTa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117439	115117439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	48	400	0	ENST00000257566.3:c.735G>T	p.Met245Ile	p.M245I	ENST00000257566	NM_016569.3	245	atG/atT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189931	66189931	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	46	300	0	ENST00000273854.3:c.3015G>C	p.Leu1005Phe	p.L1005F	ENST00000273854	NM_004439.5	1005	ttG/ttC																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0081386-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			354	25	278	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
CBL	867	MSKCC	GRCh37	11	119170274	119170274	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057518072		P-0081386-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			694	49	339	1	ENST00000264033.4:c.2504G>A	p.Arg835Gln	p.R835Q	ENST00000264033	NM_005188.3	835	cGg/cAg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170013720	170013720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081386-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	39	258	0	ENST00000295797.4:c.1439G>A	p.Arg480His	p.R480H	ENST00000295797	NM_002740.5	480	cGc/cAc																																																																															
ERG	2078	MSKCC	GRCh37	21	39795449	39795449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144012510		P-0081386-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			462	74	355	0	ENST00000288319.7:c.271G>A	p.Gly91Arg	p.G91R	ENST00000288319	NM_182918.3	91	Ggg/Agg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056237	26056245	+	inframe_deletion	In_Frame_Del	DEL	CTTCTTGGG	CTTCTTGGG	-	rs749190253		P-0081386-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			850	53	431	0	ENST00000343677.2:c.412_420del	p.Pro138_Lys140del	p.P138_K140del	ENST00000343677	NM_005319.3	138	CCCAAGAAG/-																																																																															
POLE	5426	MSKCC	GRCh37	12	133218811	133218811	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs572502366		P-0081386-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			493	70	330	0	ENST00000320574.5:c.5125G>A	p.Asp1709Asn	p.D1709N	ENST00000320574	NM_006231.2	1709	Gat/Aat																																																																															
APLNR	187	MSKCC	GRCh37	11	57004130	57004130	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs750760773		P-0081386-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			492	51	361	0	ENST00000257254.3:c.349G>A	p.Val117Ile	p.V117I	ENST00000257254		117	Gtc/Atc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114901012	114901012	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081386-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			619	121	337	0	ENST00000543371.1:c.622A>G	p.Asn208Asp	p.N208D	ENST00000543371	NM_001198531.1	208	Aat/Gat																																																																															
MGA	23269	MSKCC	GRCh37	15	42026774	42026774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084662-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			286	184	224	0	ENST00000219905.7:c.3898G>A	p.Asp1300Asn	p.D1300N	ENST00000219905	NM_001164273.1	1300	Gat/Aat																																																																															
RARA	5914	MSKCC	GRCh37	17	38512376	38512377	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0084662-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			225	104	207	0	ENST00000254066.5:c.1293dup	p.Arg432AlafsTer14	p.R432Afs*14	ENST00000254066	NM_000964.3	429	-/G																																																																															
RAD50	10111	MSKCC	GRCh37	5	131953856	131953856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084662-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			410	158	169	0	ENST00000265335.6:c.3259C>T	p.His1087Tyr	p.H1087Y	ENST00000265335		1087	Cat/Tat																																																																															
RET	5979	MSKCC	GRCh37	10	43613859	43613859	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084662-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			584	198	263	0	ENST00000355710.3:c.2323G>C	p.Glu775Gln	p.E775Q	ENST00000355710	NM_020975.4	775	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577077	7577091	+	inframe_deletion	In_Frame_Del	DEL	CTCTTCCTCTGTGCG	CTCTTCCTCTGTGCG	-			P-0084662-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			103	522	430	0	ENST00000269305.4:c.847_861del	p.Arg283_Glu287del	p.R283_E287del	ENST00000269305	NM_001126112.2	283	CGCACAGAGGAAGAG/-																																																																															
ALB	213	MSKCC	GRCh37	4	74277834	74277834	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084662-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			279	230	300	0	ENST00000295897.4:c.835G>C	p.Asp279His	p.D279H	ENST00000295897	NM_000477.5	279	Gat/Cat																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056240	26056240	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084662-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1023	279	450	0	ENST00000343677.2:c.417G>T	p.Lys139Asn	p.K139N	ENST00000343677	NM_005319.3	139	aaG/aaT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099103	27099103	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			835	437	516	0	ENST00000324856.7:c.3524del	p.Pro1175HisfsTer5	p.P1175Hfs*5	ENST00000324856	NM_006015.4	1173	atC/at																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427932	49427932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	163	425	0	ENST00000301067.7:c.10658G>A	p.Gly3553Asp	p.G3553D	ENST00000301067	NM_003482.3	3553	gGc/gAc																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50488298	50488298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	103	352	0	ENST00000394963.4:c.1212G>A	p.Met404Ile	p.M404I	ENST00000394963	NM_003076.4	404	atG/atA																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678344	88678344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1205263292		P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	160	363	0	ENST00000360948.2:c.1192G>A	p.Glu398Lys	p.E398K	ENST00000360948	NM_001012338.2	398	Gag/Aag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984817	72984817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	255	412	0	ENST00000268489.5:c.2767G>T	p.Val923Leu	p.V923L	ENST00000268489	NM_006885.3	923	Gtg/Ttg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17118378	17118378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	295	487	1	ENST00000285071.4:c.1459G>A	p.Glu487Lys	p.E487K	ENST00000285071	NM_144997.5	487	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574027	7574027	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882028		P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	231	369	0	ENST00000269305.4:c.1000G>T	p.Gly334Trp	p.G334W	ENST00000269305	NM_001126112.2	334	Ggg/Tgg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164727	36164727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			976	292	541	0	ENST00000300305.3:c.1148C>T	p.Pro383Leu	p.P383L	ENST00000300305		383	cCg/cTg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	176	318	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480480	89480480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	186	370	0	ENST00000336596.2:c.2317G>T	p.Asp773Tyr	p.D773Y	ENST00000336596	NM_005233.5	773	Gat/Tat																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499325	89499325	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	209	378	0	ENST00000336596.2:c.2497-2A>T		p.X833_splice	ENST00000336596	NM_005233.5	833																																																																																
FAT1	2195	MSKCC	GRCh37	4	187509914	187509914	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			731	51	472	0	ENST00000441802.2:c.13599G>C	p.Glu4533Asp	p.E4533D	ENST00000441802	NM_005245.3	4533	gaG/gaC																																																																															
EZH2	2146	MSKCC	GRCh37	7	148543564	148543566	+	stop_gained	Nonsense_Mutation	ONP	CCC	CCC	ACA			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	112	374	0	ENST00000320356.2:c.242_244delinsTGT	p.Arg81_Glu82delinsMetTer	p.R81_E82delinsM*	ENST00000320356	NM_004456.4	81	aGGGag/aTGTag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11259316	11259316	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	345	418	0	ENST00000361445.4:c.4252A>T	p.Ser1418Cys	p.S1418C	ENST00000361445	NM_004958.3	1418	Agc/Tgc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206652458	206652458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			859	309	456	0	ENST00000367120.3:c.1165G>T	p.Gly389Trp	p.G389W	ENST00000367120	NM_014002.3	389	Ggg/Tgg																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612889	228612890	+	missense_variant	Missense_Mutation	DNP	CG	CG	TT			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1113	323	679	1	ENST00000366696.1:c.137_138delinsAA	p.Thr46Lys	p.T46K	ENST00000366696	NM_003493.2	46	aCG/aAA																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241970	72241970	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	67	338	0	ENST00000357731.5:c.420G>C	p.Lys140Asn	p.K140N	ENST00000357731	NM_173808.2	140	aaG/aaC																																																																															
RET	5979	MSKCC	GRCh37	10	43602014	43602014	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			773	81	418	0	ENST00000355710.3:c.1058A>T	p.Asp353Val	p.D353V	ENST00000355710	NM_020975.4	353	gAc/gTc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102198824	102198824	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	103	329	0	ENST00000263464.3:c.995G>T	p.Arg332Leu	p.R332L	ENST00000263464	NM_001165.4	332	cGt/cTt																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944853	31944853	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			750	135	419	0	ENST00000340398.3:c.248G>T	p.Arg83Met	p.R83M	ENST00000340398	NM_001013699.2	83	aGg/aTg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28624232	28624232	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	121	395	0	ENST00000241453.7:c.742G>T	p.Asp248Tyr	p.D248Y	ENST00000241453	NM_004119.2	248	Gat/Tat																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43720340	43720340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	107	394	0	ENST00000382044.4:c.3702G>T	p.Gln1234His	p.Q1234H	ENST00000382044	NM_001141980.1	1234	caG/caT																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51504608	51504608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	139	374	0	ENST00000260433.2:c.1172G>T	p.Gly391Val	p.G391V	ENST00000260433		391	gGg/gTg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14014221	14014221	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	138	393	0	ENST00000311895.7:c.199G>C	p.Ala67Pro	p.A67P	ENST00000311895	NM_005236.2	67	Gcc/Ccc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223182	2223182	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			760	140	495	0	ENST00000326181.6:c.795-1G>T		p.X265_splice	ENST00000326181	NM_032271.2	265																																																																																
FLCN	201163	MSKCC	GRCh37	17	17120394	17120394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	185	336	0	ENST00000285071.4:c.1165G>A	p.Glu389Lys	p.E389K	ENST00000285071	NM_144997.5	389	Gaa/Aaa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17122381	17122381	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	273	395	0	ENST00000285071.4:c.1014G>A	p.Trp338Ter	p.W338*	ENST00000285071	NM_144997.5	338	tgG/tgA																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870051	40870051	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	293	366	0	ENST00000428826.2:c.966G>C	p.Lys322Asn	p.K322N	ENST00000428826		322	aaG/aaC																																																																															
SPOP	8405	MSKCC	GRCh37	17	47677821	47677821	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1043	111	410	0	ENST00000347630.2:c.1044G>C	p.Leu348Phe	p.L348F	ENST00000347630	NM_001007230.1	348	ttG/ttC																																																																															
CIC	23152	MSKCC	GRCh37	19	42798795	42798806	+	inframe_deletion	In_Frame_Del	DEL	ACAAGGTGCCAT	ACAAGGTGCCAT	-			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	800	381	0	ENST00000575354.2:c.4369_4380del	p.Lys1457_Tyr1460del	p.K1457_Y1460del	ENST00000575354	NM_015125.3	1456	gACAAGGTGCCATac/gac																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52723049	52723049	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			705	530	447	0	ENST00000322088.6:c.1234G>T	p.Ala412Ser	p.A412S	ENST00000322088	NM_014225.5	412	Gct/Tct																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128047383	128047383	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	262	434	0	ENST00000285398.2:c.539G>T	p.Cys180Phe	p.C180F	ENST00000285398	NM_000122.1	180	tGc/tTc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158626970	158626970	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	241	435	0	ENST00000263640.3:c.700G>T	p.Val234Leu	p.V234L	ENST00000263640	NM_001105.4	234	Gtg/Ttg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225365191	225365191	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	258	351	0	ENST00000264414.4:c.1499G>T	p.Gly500Val	p.G500V	ENST00000264414	NM_003590.4	500	gGt/gTt																																																																															
ALK	238	MSKCC	GRCh37	2	29519886	29519886	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			786	160	445	0	ENST00000389048.3:c.1685G>T	p.Gly562Val	p.G562V	ENST00000389048	NM_004304.4	562	gGa/gTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944399	40944399	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			731	192	394	0	ENST00000373198.4:c.2103C>A	p.Tyr701Ter	p.Y701*	ENST00000373198	NM_133170.3	701	taC/taA																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204642	128204642	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	297	529	0	ENST00000341105.2:c.799C>A	p.Pro267Thr	p.P267T	ENST00000341105	NM_032638.4	267	Ccc/Acc																																																																															
MITF	4286	MSKCC	GRCh37	3	69987040	69987040	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			910	122	422	0	ENST00000352241.4:c.422A>T	p.Gln141Leu	p.Q141L	ENST00000352241	NM_198159.2	141	cAg/cTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541013	187541013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			725	145	522	0	ENST00000441802.2:c.6727G>T	p.Asp2243Tyr	p.D2243Y	ENST00000441802	NM_005245.3	2243	Gac/Tac																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149452870	149452870	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	221	412	0	ENST00000286301.3:c.1076C>A	p.Thr359Lys	p.T359K	ENST00000286301	NM_005211.3	359	aCa/aAa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670418	30670418	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			833	232	457	0	ENST00000376406.3:c.6014C>G	p.Pro2005Arg	p.P2005R	ENST00000376406	NM_014641.2	2005	cCt/cGt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166702	32166702	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			820	173	433	0	ENST00000375023.3:c.4535+1G>A		p.X1512_splice	ENST00000375023	NM_004557.3	1512																																																																																
IRF4	3662	MSKCC	GRCh37	6	397219	397219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			961	154	556	0	ENST00000380956.4:c.604G>T	p.Gly202Cys	p.G202C	ENST00000380956	NM_001195286.1	202	Ggc/Tgc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066515	94066515	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	111	435	0	ENST00000369303.4:c.1244T>A	p.Val415Asp	p.V415D	ENST00000369303	NM_004440.3	415	gTt/gAt																																																																															
MET	4233	MSKCC	GRCh37	7	116436165	116436165	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	87	348	0	ENST00000397752.3:c.4160G>T	p.Trp1387Leu	p.W1387L	ENST00000397752	NM_000245.2	1387	tGg/tTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151880103	151880103	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	123	366	0	ENST00000262189.6:c.5221A>T	p.Lys1741Ter	p.K1741*	ENST00000262189	NM_170606.2	1741	Aag/Tag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2963998	2963998	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			841	257	440	0	ENST00000396946.4:c.1809T>A	p.Asp603Glu	p.D603E	ENST00000396946	NM_032415.4	603	gaT/gaA																																																																															
MED12	9968	MSKCC	GRCh37	X	70346965	70346965	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	287	204	0	ENST00000374080.3:c.2832G>T	p.Met944Ile	p.M944I	ENST00000374080		944	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0085095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	159	277	0	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508903	106508903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	216	292	0	ENST00000359195.3:c.897C>A	p.Asn299Lys	p.N299K	ENST00000359195	NM_002649.2	299	aaC/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7576853	7576853	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs11575996		P-0085095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	228	298	2	ENST00000269305.4:c.993G>T	p.Gln331His	p.Q331H	ENST00000269305	NM_001126112.2	331	caG/caT																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807494	1807494	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1474187970		P-0085095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	263	298	0	ENST00000260795.2:c.1663G>A	p.Val555Met	p.V555M	ENST00000260795		555	Gtg/Atg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40359733	40359733	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0085095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	311	227	0	ENST00000293328.3:c.1920T>G	p.Phe640Leu	p.F640L	ENST00000293328	NM_012448.3	640	ttT/ttG																																																																															
RB1	5925	MSKCC	GRCh37	13	49037906	49037906	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0085095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	84	206	0	ENST00000267163.4:c.2147del	p.Asn716IlefsTer2	p.N716Ifs*2	ENST00000267163	NM_000321.2	716	Aat/at																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38173059	38173059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	191	214	0	ENST00000317025.8:c.1990G>T	p.Gly664Cys	p.G664C	ENST00000317025	NM_023034.1	664	Ggc/Tgc																																																																															
ABL1	25	MSKCC	GRCh37	9	133753947	133753947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	476	205	0	ENST00000318560.5:c.1416G>A	p.Met472Ile	p.M472I	ENST00000318560	NM_005157.4	472	atG/atA																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527449	157527449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0085095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	154	280	0	ENST00000346085.5:c.5174C>A	p.Ala1725Glu	p.A1725E	ENST00000346085	NM_020732.3	1725	gCa/gAa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21629923	21629923	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140033676		P-0085095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	68	181	0	ENST00000421138.2:c.871C>T	p.Arg291Trp	p.R291W	ENST00000421138		291	Cgg/Tgg																																																																															
MSH3	4437	MSKCC	GRCh37	5	80160755	80160755	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	202	214	0	ENST00000265081.6:c.3124G>C	p.Asp1042His	p.D1042H	ENST00000265081	NM_002439.4	1042	Gat/Cat																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39629543	39629543	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	134	181	0	ENST00000262039.4:c.2237T>C	p.Leu746Pro	p.L746P	ENST00000262039	NM_002647.2	746	cTg/cCg																																																																															
FH	2271	MSKCC	GRCh37	1	241665782	241665782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0085095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	326	224	0	ENST00000366560.3:c.1197C>A	p.Ser399Arg	p.S399R	ENST00000366560	NM_000143.3	399	agC/agA																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670340	134670340	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0085095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			919	108	265	0	ENST00000398015.3:c.251G>C	p.Arg84Pro	p.R84P	ENST00000398015	NM_004441.4	84	cGc/cCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0085117-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	35	216	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0085117-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	96	305	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47087994	47087994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085117-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	92	313	0	ENST00000409792.3:c.7081C>T	p.Pro2361Ser	p.P2361S	ENST00000409792	NM_014159.6	2361	Cct/Tct																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346298	152346298	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776959023		P-0085117-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	83	264	0	ENST00000359321.1:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000359321	NM_005431.1	91	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0085120-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	42	299	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112175417	112175418	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0085120-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	19	375	0	ENST00000257430.4:c.4127_4128del	p.Tyr1376CysfsTer9	p.Y1376Cfs*9	ENST00000257430	NM_000038.5	1376	TAt/t																																																																															
APC	324	MSKCC	GRCh37	5	112163698	112163698	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854572		P-0085120-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	14	225	0	ENST00000257430.4:c.1621C>T	p.Gln541Ter	p.Q541*	ENST00000257430	NM_000038.5	541	Cag/Tag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46242662	46242662	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0085120-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	9	0	0	ENST00000334344.6:c.1624C>T	p.Arg542Ter	p.R542*	ENST00000334344	NM_152641.2	542	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733279	40733279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201275244		P-0085120-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	30	386	0	ENST00000373198.4:c.3527G>A	p.Arg1176His	p.R1176H	ENST00000373198	NM_133170.3	1176	cGt/cAt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981167	201981168	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0085120-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	60	380	0	ENST00000359651.3:c.248dup	p.Asn83LysfsTer9	p.N83Kfs*9	ENST00000359651		82	-/A																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711361	114711361	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0085120-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	27	233	0	ENST00000543371.1:c.376C>T	p.Arg126Ter	p.R126*	ENST00000543371	NM_001198531.1	126	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs876659675		P-0085123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	121	332	0	ENST00000269305.4:c.764T>G	p.Ile255Ser	p.I255S	ENST00000269305	NM_001126112.2	255	aTc/aGc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098625	47098625	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0085123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	122	496	0	ENST00000409792.3:c.6649del	p.Leu2217PhefsTer31	p.L2217Ffs*31	ENST00000409792	NM_014159.6	2217	Ctt/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0085123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	74	366	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
ATM	472	MSKCC	GRCh37	11	108122687	108122687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	23	303	0	ENST00000278616.4:c.1731G>A	p.Met577Ile	p.M577I	ENST00000278616	NM_000051.3	577	atG/atA																																																																															
APC	324	MSKCC	GRCh37	5	112173364	112173364	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0085123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	28	367	0	ENST00000257430.4:c.2073T>A	p.Asn691Lys	p.N691K	ENST00000257430	NM_000038.5	691	aaT/aaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380270	25380270	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0085123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	74	371	0	ENST00000256078.4:c.188A>G	p.Glu63Gly	p.E63G	ENST00000256078	NM_033360.2	63	gAg/gGg																																																																															
ALB	213	MSKCC	GRCh37	4	74283958	74283958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0085123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	32	303	0	ENST00000295897.4:c.1582G>A	p.Ala528Thr	p.A528T	ENST00000295897	NM_000477.5	528	Gct/Act																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27840087	27840087	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs745307657		P-0085123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	151	456	0	ENST00000328488.2:c.7C>T	p.Arg3Ter	p.R3*	ENST00000328488	NM_003533.2	3	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28929495		P-0055332-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			317	105	447	0	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241678	55241678	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs397517085		P-0055332-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	101	554	0	ENST00000275493.2:c.2126A>C	p.Glu709Ala	p.E709A	ENST00000275493	NM_005228.3	709	gAa/gCa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220115	36220115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055332-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	104	621	0	ENST00000222270.7:c.4835C>T	p.Ala1612Val	p.A1612V	ENST00000222270	NM_014727.1	1612	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs876658468		P-0072650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			259	335	465	0	ENST00000269305.4:c.577C>A	p.His193Asn	p.H193N	ENST00000269305	NM_001126112.2	193	Cat/Aat																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672780	30672780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			765	412	443	0	ENST00000376406.3:c.4180G>A	p.Gly1394Arg	p.G1394R	ENST00000376406	NM_014641.2	1394	Gga/Aga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097622	8097622	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			175	243	289	0	ENST00000346208.3:c.4G>T	p.Glu2Ter	p.E2*	ENST00000346208		2	Gag/Tag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913140	39913140	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0072650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			442	117	321	0	ENST00000378444.4:c.4975G>T	p.Gly1659Trp	p.G1659W	ENST00000378444	NM_001123385.1	1659	Ggg/Tgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610153	10610153	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			268	471	381	0	ENST00000171111.5:c.557G>C	p.Gly186Ala	p.G186A	ENST00000171111	NM_203500.1	186	gGc/gCc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940615	49940615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			217	693	406	0	ENST00000296474.3:c.428G>T	p.Cys143Phe	p.C143F	ENST00000296474	NM_002447.2	143	tGc/tTc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518181	103518181	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0072650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			164	217	357	0	ENST00000355739.4:c.2119A>T	p.Arg707Trp	p.R707W	ENST00000355739	NM_000123.3	707	Agg/Tgg																																																																															
IGF2	3481	MSKCC	GRCh37	11	2156713	2156714	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0072650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			473	193	398	0	ENST00000434045.2:c.208dup	p.Thr70AsnfsTer17	p.T70Nfs*17	ENST00000434045	NM_001127598.1	70	acc/aAcc																																																																															
RB1	5925	MSKCC	GRCh37	13	48919254	48919254	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			101	100	194	0	ENST00000267163.4:c.420del	p.Ser141ValfsTer12	p.S141Vfs*12	ENST00000267163	NM_000321.2	140	aCc/ac																																																																															
ALK	238	MSKCC	GRCh37	2	29541242	29541242	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0072650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			306	140	342	0	ENST00000389048.3:c.1575T>A	p.Asp525Glu	p.D525E	ENST00000389048	NM_004304.4	525	gaT/gaA																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2224251	2224251	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0072650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	282	318	0	ENST00000326181.6:c.1264-1G>A		p.X422_splice	ENST00000326181	NM_032271.2	422																																																																																
PGBD5	79605	MSKCC	GRCh37	1	230561370	230561370	+	5_prime_UTR_variant	5'UTR	SNP	G	G	T			P-0072650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			455	201	519	0	ENST00000391860.1:c.-41C>A		p.*14*	ENST00000391860	NM_001258311.1																																																																																	
KDM6A	7403	MSKCC	GRCh37	X	44969488	44969489	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			204	63	252	0	ENST00000377967.4:c.4171dup	p.Thr1391AsnfsTer19	p.T1391Nfs*19	ENST00000377967	NM_021140.2	1390	-/A																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78857644	78857644	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			697	104	359	0	ENST00000306801.3:c.1715del	p.Leu572CysfsTer25	p.L572Cfs*25	ENST00000306801	NM_020761.2	572	Ttg/tg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993948	72993948	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757253419		P-0072650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	153	426	0	ENST00000268489.5:c.97C>T	p.Pro33Ser	p.P33S	ENST00000268489	NM_006885.3	33	Cct/Tct																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371816	55371816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			569	113	323	0	ENST00000297316.4:c.506C>G	p.Pro169Arg	p.P169R	ENST00000297316	NM_022454.3	169	cCc/cGc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264662	46264662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			395	150	313	0	ENST00000371998.3:c.1532G>T	p.Gly511Val	p.G511V	ENST00000371998		511	gGc/gTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197787	66197787	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			121	185	291	0	ENST00000273854.3:c.2912G>C	p.Gly971Ala	p.G971A	ENST00000273854	NM_004439.5	971	gGt/gCt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119078	70119078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			417	241	367	0	ENST00000245479.2:c.650G>T	p.Gly217Val	p.G217V	ENST00000245479	NM_000346.3	217	gGc/gTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390993	89390994	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	A			P-0072650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			239	142	275	0	ENST00000336596.2:c.1059_1060delinsA	p.Arg354GlyfsTer17	p.R354Gfs*17	ENST00000336596	NM_005233.5	353	ggCCgg/ggAgg																																																																															
RHOA	387	MSKCC	GRCh37	3	49412929	49412929	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0072650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			390	146	286	0	ENST00000418115.1:c.94G>T	p.Glu32Ter	p.E32*	ENST00000418115	NM_001664.2	32	Gag/Tag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0072854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	73	268	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061192	38061192	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	360	337	0	ENST00000250448.2:c.797T>C	p.Phe266Ser	p.F266S	ENST00000250448	NM_004496.3	266	tTc/tCc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877148	151877148	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0072854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	152	334	0	ENST00000262189.6:c.7213G>T	p.Glu2405Ter	p.E2405*	ENST00000262189	NM_170606.2	2405	Gag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132862	152132862	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	111	187	0	ENST00000262189.6:c.10del	p.Glu4ArgfsTer101	p.E4Rfs*101	ENST00000262189	NM_170606.2	4	Gag/ag																																																																															
ATM	472	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			263	204	349	0	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																																																															
INHA	3623	MSKCC	GRCh37	2	220437230	220437230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs960266462		P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			226	89	406	0	ENST00000243786.2:c.134C>T	p.Ala45Val	p.A45V	ENST00000243786	NM_002191.3	45	gCg/gTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660075	227660075	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462380251		P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	107	590	0	ENST00000305123.5:c.3380del	p.Gly1127AlafsTer12	p.G1127Afs*12	ENST00000305123	NM_005544.2	1127	gGc/gc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207204	1207204	+	splice_donor_variant	Splice_Site	DEL	T	T	-			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			80	152	291	0	ENST00000326873.7:c.290+2del		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10610396	10610396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			112	197	407	0	ENST00000171111.5:c.314C>T	p.Pro105Leu	p.P105L	ENST00000171111	NM_203500.1	105	cCt/cTt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239917	98239917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			112	166	392	0	ENST00000331920.6:c.1415C>T	p.Ala472Val	p.A472V	ENST00000331920	NM_000264.3	472	gCt/gTt																																																																															
ATM	472	MSKCC	GRCh37	11	108206609	108206609	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs762154857		P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	175	409	0	ENST00000278616.4:c.8189A>G	p.Gln2730Arg	p.Q2730R	ENST00000278616	NM_000051.3	2730	cAg/cGg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39914661	39914661	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			224	94	313	0	ENST00000378444.4:c.4701G>T	p.Met1567Ile	p.M1567I	ENST00000378444	NM_001123385.1	1567	atG/atT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27058015	27058015	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			137	240	424	0	ENST00000324856.7:c.1723C>T	p.Gln575Ter	p.Q575*	ENST00000324856	NM_006015.4	575	Cag/Tag																																																																															
MSH2	4436	MSKCC	GRCh37	2	47693802	47693802	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs63750492		P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			248	194	411	0	ENST00000233146.2:c.1516G>T	p.Asp506Tyr	p.D506Y	ENST00000233146	NM_000251.2	506	Gac/Tac																																																																															
ATRX	546	MSKCC	GRCh37	X	76777855	76777855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			304	292	370	0	ENST00000373344.5:c.6861G>A	p.Met2287Ile	p.M2287I	ENST00000373344	NM_000489.3	2287	atG/atA																																																																															
CDC73	79577	MSKCC	GRCh37	1	193181207	193181207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			387	125	321	0	ENST00000367435.3:c.1043G>A	p.Arg348Lys	p.R348K	ENST00000367435	NM_024529.4	348	aGa/aAa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411800	63411800	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			452	49	516	0	ENST00000330258.3:c.1367C>A	p.Pro456His	p.P456H	ENST00000330258	NM_152424.3	456	cCt/cAt																																																																															
NPM1	4869	MSKCC	GRCh37	5	170832328	170832328	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			119	66	158	0	ENST00000296930.5:c.692A>C	p.Gln231Pro	p.Q231P	ENST00000296930	NM_002520.6	231	cAg/cCg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14026139	14026139	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	239	389	0	ENST00000311895.7:c.1099G>T	p.Glu367Ter	p.E367*	ENST00000311895	NM_005236.2	367	Gaa/Taa																																																																															
CARM1	10498	MSKCC	GRCh37	19	11019830	11019830	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			135	216	362	0	ENST00000327064.4:c.505A>C	p.Thr169Pro	p.T169P	ENST00000327064	NM_199141.1	169	Aca/Cca																																																																															
NSD1	64324	MSKCC	GRCh37	5	176700757	176700757	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			243	144	360	0	ENST00000439151.2:c.5594A>G	p.Lys1865Arg	p.K1865R	ENST00000439151	NM_022455.4	1865	aAg/aGg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940705	71940705	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			365	104	478	0	ENST00000298229.2:c.754-2A>G		p.X252_splice	ENST00000298229	NM_001567.3	252																																																																																
MGA	23269	MSKCC	GRCh37	15	42042362	42042362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			342	151	545	0	ENST00000219905.7:c.6557G>A	p.Cys2186Tyr	p.C2186Y	ENST00000219905	NM_001164273.1	2186	tGt/tAt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411177	63411177	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			367	27	412	0	ENST00000330258.3:c.1990A>T	p.Met664Leu	p.M664L	ENST00000330258	NM_152424.3	664	Atg/Ttg																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2494690	2494690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			139	151	352	0	ENST00000355716.4:c.830C>A	p.Thr277Lys	p.T277K	ENST00000355716	NM_003820.2	277	aCg/aAg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156830734	156830734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			151	46	256	0	ENST00000524377.1:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000524377	NM_002529.3	3	cGa/cAa																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023326	33023326	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			296	154	523	0	ENST00000300177.4:c.435G>T	p.Lys145Asn	p.K145N	ENST00000300177	NM_001191322.1	145	aaG/aaT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714383	40714383	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	84	401	0	ENST00000373198.4:c.4014C>G	p.Ile1338Met	p.I1338M	ENST00000373198	NM_133170.3	1338	atC/atG																																																																															
ALB	213	MSKCC	GRCh37	4	74280818	74280818	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			379	128	410	0	ENST00000295897.4:c.1125G>T	p.Lys375Asn	p.K375N	ENST00000295897	NM_000477.5	375	aaG/aaT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117674255	117674255	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			332	164	496	0	ENST00000368508.3:c.4219A>G	p.Ile1407Val	p.I1407V	ENST00000368508	NM_002944.2	1407	Att/Gtt																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458245	12458245	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			286	107	378	0	ENST00000287820.6:c.862G>C	p.Asp288His	p.D288H	ENST00000287820	NM_015869.4	288	Gat/Cat																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130397	29130397	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			157	512	382	0	ENST00000328354.6:c.313A>T	p.Asn105Tyr	p.N105Y	ENST00000328354	NM_007194.3	105	Aat/Tat																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658818	3658818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	58	416	0	ENST00000294008.3:c.148G>T	p.Asp50Tyr	p.D50Y	ENST00000294008	NM_032444.2	50	Gac/Tac																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828180	243828180	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076967-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	52	327	0	ENST00000263826.5:c.178C>T	p.Gln60Ter	p.Q60*	ENST00000263826	NM_005465.4	60	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0082827-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			639	7	0	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
AR	367	MSKCC	GRCh37	X	66765699	66765699	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082827-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	9	0	0	ENST00000374690.3:c.711G>T	p.Lys237Asn	p.K237N	ENST00000374690	NM_000044.3	237	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082878-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			567	179	470	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29422382	29422382	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs786203307		P-0082878-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			366	44	292	0	ENST00000358273.4:c.55G>T	p.Glu19Ter	p.E19*	ENST00000358273	NM_001042492.2	19	Gag/Tag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11272469	11272469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082878-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			619	49	345	0	ENST00000361445.4:c.3461G>A	p.Arg1154Gln	p.R1154Q	ENST00000361445	NM_004958.3	1154	cGg/cAg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864361	162864361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082878-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	75	337	0	ENST00000366898.1:c.152G>T	p.Arg51Met	p.R51M	ENST00000366898	NM_004562.2	51	aGg/aTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140508773	140508773	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082878-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			361	104	232	0	ENST00000288602.6:c.527C>G	p.Thr176Arg	p.T176R	ENST00000288602	NM_004333.4	176	aCa/aGa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187234	38187234	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1430504174		P-0082878-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			643	86	378	0	ENST00000317025.8:c.1243G>A	p.Glu415Lys	p.E415K	ENST00000317025	NM_023034.1	415	Gaa/Aaa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109936	115109936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082878-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			373	85	445	0	ENST00000257566.3:c.1942C>A	p.Pro648Thr	p.P648T	ENST00000257566	NM_016569.3	648	Ccg/Acg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602764	10602764	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082878-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			618	166	493	0	ENST00000171111.5:c.814C>A	p.Arg272Ser	p.R272S	ENST00000171111	NM_203500.1	272	Cgc/Agc																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873097	136873097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082878-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			631	80	406	0	ENST00000241393.3:c.401G>T	p.Arg134Leu	p.R134L	ENST00000241393	NM_003467.2	134	cGc/cTc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444281	50444281	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0082878-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			762	69	364	0	ENST00000331340.3:c.211T>A	p.Cys71Ser	p.C71S	ENST00000331340	NM_006060.4	71	Tgt/Agt																																																																															
TET1	80312	MSKCC	GRCh37	10	70332337	70332337	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082878-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			706	116	343	0	ENST00000373644.4:c.242G>T	p.Arg81Leu	p.R81L	ENST00000373644	NM_030625.2	81	cGc/cTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720649	89720649	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T	rs587782455		P-0078271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	59	236	1	ENST00000371953.3:c.802-2A>T		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																																
HGF	3082	MSKCC	GRCh37	7	81358978	81358978	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374484762		P-0078271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	148	442	0	ENST00000222390.5:c.983G>A	p.Arg328His	p.R328H	ENST00000222390	NM_000601.4	328	cGt/cAt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119807	70119808	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	AA			P-0078271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	130	464	0	ENST00000245479.2:c.809_810delinsAA	p.Phe270Ter	p.F270*	ENST00000245479	NM_000346.3	270	tTC/tAA																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983060	201983060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	201	535	0	ENST00000359651.3:c.909C>A	p.Phe303Leu	p.F303L	ENST00000359651		303	ttC/ttA																																																																															
APC	324	MSKCC	GRCh37	5	112175152	112175153	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0078271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	138	495	0	ENST00000257430.4:c.3863dup	p.Cys1289MetfsTer2	p.C1289Mfs*2	ENST00000257430	NM_000038.5	1287	-/G																																																																															
MSH3	4437	MSKCC	GRCh37	5	80083393	80083393	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	126	435	0	ENST00000265081.6:c.2445T>A	p.Ser815Arg	p.S815R	ENST00000265081	NM_002439.4	815	agT/agA																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005086	150005086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	213	680	0	ENST00000253339.5:c.1139C>T	p.Ala380Val	p.A380V	ENST00000253339		380	gCa/gTa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829512	72829512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	174	494	0	ENST00000268489.5:c.7069G>A	p.Glu2357Lys	p.E2357K	ENST00000268489	NM_006885.3	2357	Gag/Aag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55151622	55151622	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082912-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			346	5	0	0	ENST00000257290.5:c.2408C>A	p.Ala803Asp	p.A803D	ENST00000257290	NM_006206.4	803	gCc/gAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29585423	29585423	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082912-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	20	339	0	ENST00000358273.4:c.4235G>T	p.Arg1412Ile	p.R1412I	ENST00000358273	NM_001042492.2	1412	aGa/aTa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098957	178098957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			462	117	483	0	ENST00000397062.3:c.88C>T	p.Leu30Phe	p.L30F	ENST00000397062	NM_006164.4	30	Ctt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0084650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			574	83	606	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78727981	78727981	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1481790013		P-0084650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			411	96	441	1	ENST00000306801.3:c.826C>T	p.Arg276Cys	p.R276C	ENST00000306801	NM_020761.2	276	Cgc/Tgc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198257079	198257079	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			323	38	388	0	ENST00000335508.6:c.3863A>G	p.Tyr1288Cys	p.Y1288C	ENST00000335508	NM_012433.2	1288	tAc/tGc																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020774	26020774	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0084650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			545	33	562	0	ENST00000357647.3:c.57A>T	p.Lys19Asn	p.K19N	ENST00000357647	NM_003529.2	19	aaA/aaT																																																																															
BARD1	580	MSKCC	GRCh37	2	215661825	215661825	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			289	40	310	0	ENST00000260947.4:c.175G>C	p.Glu59Gln	p.E59Q	ENST00000260947	NM_000465.2	59	Gag/Cag																																																																															
EZH1	2145	MSKCC	GRCh37	17	40857122	40857122	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			437	25	368	0	ENST00000428826.2:c.1919C>G	p.Ser640Cys	p.S640C	ENST00000428826		640	tCt/tGt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21643196	21643196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084650-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			415	28	403	0	ENST00000421138.2:c.331C>T	p.Leu111Phe	p.L111F	ENST00000421138		111	Ctt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0084803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	68	451	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
MGA	23269	MSKCC	GRCh37	15	42052636	42052636	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1054243525		P-0084803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	113	529	0	ENST00000219905.7:c.7307G>A	p.Arg2436His	p.R2436H	ENST00000219905	NM_001164273.1	2436	cGt/cAt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131973835	131973835	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1333645178		P-0084803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	73	464	0	ENST00000265335.6:c.3538C>T	p.Arg1180Trp	p.R1180W	ENST00000265335		1180	Cgg/Tgg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67201475	67201475	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776029111		P-0084803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	78	652	0	ENST00000312629.5:c.916C>T	p.Arg306Trp	p.R306W	ENST00000312629	NM_003952.2	306	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0084807-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	203	598	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0084807-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	151	462	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984024	2984024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084807-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	112	411	0	ENST00000396946.4:c.506C>T	p.Thr169Met	p.T169M	ENST00000396946	NM_032415.4	169	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0084807-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	166	460	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0084807-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	126	292	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GNA11	2767	MSKCC	GRCh37	19	3094771	3094772	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			P-0084807-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	115	436	0	ENST00000078429.4:c.132_134dup	p.Leu45dup	p.L45dup	ENST00000078429	NM_002067.2	45	aag/aaGCTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0084917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	123	359	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0084917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	113	378	0	ENST00000257430.4:c.4063dup	p.Ser1355PhefsTer20	p.S1355Ffs*20	ENST00000257430	NM_000038.5	1353	-/T																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0084917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	131	257	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254702	16254702	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0084917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	162	397	0	ENST00000375759.3:c.1967A>T	p.Glu656Val	p.E656V	ENST00000375759	NM_015001.2	656	gAg/gTg																																																																															
SESN3	143686	MSKCC	GRCh37	11	94917698	94917698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	37	370	0	ENST00000536441.1:c.823G>A	p.Glu275Lys	p.E275K	ENST00000536441	NM_144665.3	275	Gaa/Aaa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0084894-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			903	39	370	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578446	7578446	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0084894-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			814	33	414	1	ENST00000269305.4:c.484A>T	p.Ile162Phe	p.I162F	ENST00000269305	NM_001126112.2	162	Atc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0084895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	27	307	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060746	38060746	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	31	388	0	ENST00000250448.2:c.1243C>G	p.Leu415Val	p.L415V	ENST00000250448	NM_004496.3	415	Ctg/Gtg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30325747	30325749	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0084898-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	81	289	0	ENST00000322652.5:c.1950_1952del	p.Lys650del	p.K650del	ENST00000322652	NM_015355.2	649	AAG/-																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396326	139396327	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0084898-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	123	403	0	ENST00000277541.6:c.5511dup	p.Thr1838AspfsTer15	p.T1838Dfs*15	ENST00000277541	NM_017617.3	1837	-/G																																																																															
STK19	8859	MSKCC	GRCh37	6	31940512	31940517	+	inframe_deletion	In_Frame_Del	DEL	GGACCG	GGACCG	-			P-0084898-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	101	341	0	ENST00000375331.2:c.545_550del	p.Arg182_Val184delinsMet	p.R182_V184delinsM	ENST00000375331	NM_004197.1	182	aGGACCGtg/atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578175	7578175	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0084908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	149	514	1	ENST00000269305.4:c.672+2T>C		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
NCOA3	8202	MSKCC	GRCh37	20	46256434	46256434	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0084908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	141	451	0	ENST00000371998.3:c.662A>G	p.Tyr221Cys	p.Y221C	ENST00000371998		221	tAt/tGt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391199	89391199	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	26	421	0	ENST00000336596.2:c.1265C>A	p.Pro422Gln	p.P422Q	ENST00000336596	NM_005233.5	422	cCa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0084921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	79	187	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0084921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	73	143	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584560	48584560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0084921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	90	172	0	ENST00000342988.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000342988	NM_005359.5	245	Cag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247367	153247367	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0084921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	81	136	0	ENST00000281708.4:c.1435C>T	p.Arg479Ter	p.R479*	ENST00000281708	NM_033632.3	479	Cga/Tga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564680	86564680	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0084921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	63	186	0	ENST00000274376.6:c.416del	p.Pro139LeufsTer35	p.P139Lfs*35	ENST00000274376	NM_002890.2	138	Ccc/cc																																																																															
EP300	2033	MSKCC	GRCh37	22	41536145	41536145	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1457616974		P-0084921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	26	116	0	ENST00000263253.7:c.1762G>A	p.Val588Ile	p.V588I	ENST00000263253	NM_001429.3	588	Gtc/Atc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0084921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	54	103	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175618	112175618	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0084921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	80	156	0	ENST00000257430.4:c.4328del	p.Pro1443LeufsTer30	p.P1443Lfs*30	ENST00000257430	NM_000038.5	1443	Cct/ct																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210669	2210669	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773997638		P-0084921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	101	195	0	ENST00000398665.3:c.1166C>T	p.Pro389Leu	p.P389L	ENST00000398665	NM_032482.2	389	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112175720	112175720	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0084921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	57	156	0	ENST00000257430.4:c.4429del	p.Gln1477ArgfsTer30	p.Q1477Rfs*30	ENST00000257430	NM_000038.5	1477	Cag/ag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624228	89624228	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0084921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	18	40	0	ENST00000371953.3:c.2T>A	p.Met1?	p.M1?	ENST00000371953	NM_000314.4	1	aTg/aAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3842097	3842097	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0084921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	72	126	0	ENST00000262367.5:c.1217-2A>G		p.X406_splice	ENST00000262367	NM_004380.2	406																																																																																
PMS2	5395	MSKCC	GRCh37	7	6027071	6027071	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	36	52	0	ENST00000265849.7:c.1325C>T	p.Pro442Leu	p.P442L	ENST00000265849	NM_000535.5	442	cCa/cTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs397517199		P-0083591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	57	236	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs985033810		P-0083591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	38	308	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0083834-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			653	47	335	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0084617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	28	428	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T	rs730881673		P-0084617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	31	472	0	ENST00000304494.5:c.131dup	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481403	+	missense_variant	Missense_Mutation	DNP	CC	CC	GA	rs1057519720		P-0084617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	14	351	0	ENST00000288602.6:c.1405_1406delinsTC	p.Gly469Ser	p.G469S	ENST00000288602	NM_004333.4	469	GGa/TCa																																																																															
RARA	5914	MSKCC	GRCh37	17	38512270	38512270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866777491		P-0084617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	26	391	0	ENST00000254066.5:c.1181G>A	p.Arg394Gln	p.R394Q	ENST00000254066	NM_000964.3	394	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs104886003		P-0084721-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	17	208	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0084721-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	128	418	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967350	134967350	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs61736108		P-0084721-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	96	365	0	ENST00000398015.3:c.2689G>A	p.Val897Met	p.V897M	ENST00000398015	NM_004441.4	897	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0084721-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	155	249	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ERG	2078	MSKCC	GRCh37	21	39755599	39755599	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0084721-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	34	466	0	ENST00000288319.7:c.1166A>C	p.Lys389Thr	p.K389T	ENST00000288319	NM_182918.3	389	aAg/aCg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938590	44938590	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0084721-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	57	141	0	ENST00000377967.4:c.3138del	p.Leu1047Ter	p.L1047*	ENST00000377967	NM_021140.2	1046	tcA/tc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0084765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	14	325	1				ENST00000310581	NM_198253.2																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0084765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	8	155	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692794	89692794	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121909238		P-0084765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	12	210	0	ENST00000371953.3:c.278A>G	p.His93Arg	p.H93R	ENST00000371953	NM_000314.4	93	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111759	56111759	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	14	236	0	ENST00000399503.3:c.359G>T	p.Gly120Val	p.G120V	ENST00000399503	NM_005921.1	120	gGc/gTc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	30954224	30954224	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0084765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	33	314	0	ENST00000375687.4:c.95A>C	p.Lys32Thr	p.K32T	ENST00000375687	NM_015338.5	32	aAa/aCa																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139566447	139566447	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	19	406	0	ENST00000308874.7:c.706C>A	p.Pro236Thr	p.P236T	ENST00000308874		236	Ccc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0084769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	266	580	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0084769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	69	312	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0084769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	192	503	1	ENST00000257430.4:c.4473dup	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711296	114711296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	44	331	0	ENST00000543371.1:c.311C>T	p.Pro104Leu	p.P104L	ENST00000543371	NM_001198531.1	104	cCc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0084769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	118	324	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41400152	41400152	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			732	39	441	0	ENST00000373198.4:c.607G>T	p.Val203Leu	p.V203L	ENST00000373198	NM_133170.3	203	Gtg/Ttg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0084787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			35	11	144	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100928	27100928	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0084787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	146	460	0	ENST00000324856.7:c.4210C>T	p.Gln1404Ter	p.Q1404*	ENST00000324856	NM_006015.4	1404	Cag/Tag																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350274	15350274	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1334182511		P-0084787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	93	462	0	ENST00000263377.2:c.3505G>A	p.Ala1169Thr	p.A1169T	ENST00000263377	NM_058243.2	1169	Gca/Aca																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155624	56155625	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0084787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	96	401	0	ENST00000399503.3:c.717dup	p.Ala240CysfsTer61	p.A240Cfs*61	ENST00000399503	NM_005921.1	239	agt/agTt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123196845	123196846	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0084787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			73	30	322	0	ENST00000218089.9:c.1731+2dup		p.X577_splice	ENST00000218089	NM_001042749.1	577																																																																																
IDH1	3417	MSKCC	GRCh37	2	209106838	209106838	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0084787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	20	442	0	ENST00000345146.2:c.730A>T	p.Ile244Phe	p.I244F	ENST00000345146	NM_005896.2	244	Atc/Ttc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538326	187538326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	50	439	0	ENST00000441802.2:c.8908G>A	p.Glu2970Lys	p.E2970K	ENST00000441802	NM_005245.3	2970	Gaa/Aaa																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424087	47424088	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0084788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	63	593	0	ENST00000404338.3:c.2156dup	p.Gln720AlafsTer7	p.Q720Afs*7	ENST00000404338	NM_004491.4	719	cag/cAag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610478	10610478	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0084788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	64	550	0	ENST00000171111.5:c.232del	p.Asp78ThrfsTer79	p.D78Tfs*79	ENST00000171111	NM_203500.1	78	Gac/ac																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31437361	31437361	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0084788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	40	435	0	ENST00000344624.3:c.2927T>C	p.Val976Ala	p.V976A	ENST00000344624		976	gTt/gCt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944298	81944298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	46	499	0	ENST00000359376.3:c.1907C>T	p.Pro636Leu	p.P636L	ENST00000359376	NM_002661.3	636	cCc/cTc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435898	149435898	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	54	527	0	ENST00000286301.3:c.2326C>G	p.His776Asp	p.H776D	ENST00000286301	NM_005211.3	776	Cac/Gac																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546917	9546917	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	78	578	0	ENST00000353224.5:c.1105A>G	p.Ser369Gly	p.S369G	ENST00000353224	NM_177990.2	369	Agc/Ggc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519997		P-0084789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	183	520	0	ENST00000269305.4:c.332T>C	p.Leu111Pro	p.L111P	ENST00000269305	NM_001126112.2	111	cTg/cCg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135801072	135801072	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	86	411	0	ENST00000298552.3:c.265A>G	p.Ile89Val	p.I89V	ENST00000298552	NM_001162426.1	89	Atc/Gtc																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61306493	61306493	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	141	402	0	ENST00000341074.5:c.694C>G	p.Leu232Val	p.L232V	ENST00000341074	NM_002974.2	232	Ctg/Gtg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357553	89357553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	141	414	0	ENST00000301030.4:c.265C>T	p.Pro89Ser	p.P89S	ENST00000301030	NM_001256183.1	89	Cct/Tct																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857650	9857650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	122	503	0	ENST00000330684.3:c.3751G>T	p.Asp1251Tyr	p.D1251Y	ENST00000330684	NM_001134407.1	1251	Gac/Tac																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38614560	38614560	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	81	344	0	ENST00000299084.4:c.326C>G	p.Ala109Gly	p.A109G	ENST00000299084	NM_152594.2	109	gCt/gGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444853	49444853	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0084789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	159	628	0	ENST00000301067.7:c.2613del	p.Gly872AlafsTer58	p.G872Afs*58	ENST00000301067	NM_003482.3	871	ccA/cc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267499	198267499	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084802-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			569	109	521	0	ENST00000335508.6:c.1858A>G	p.Met620Val	p.M620V	ENST00000335508	NM_012433.2	620	Atg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0084839-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	131	270	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0084839-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	195	504	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190801	11190801	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084839-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	241	460	0	ENST00000361445.4:c.5398G>T	p.Ala1800Ser	p.A1800S	ENST00000361445	NM_004958.3	1800	Gct/Tct																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724551	162724551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084839-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	336	481	0	ENST00000367921.3:c.323G>T	p.Gly108Val	p.G108V	ENST00000367921	NM_006182.2	108	gGa/gTa																																																																															
YES1	7525	MSKCC	GRCh37	18	736861	736861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084839-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	214	397	0	ENST00000314574.4:c.1238C>T	p.Ala413Val	p.A413V	ENST00000314574	NM_005433.3	413	gCa/gTa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130282	11130282	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0084839-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	182	316	0	ENST00000344626.4:c.2521A>T	p.Arg841Ter	p.R841*	ENST00000344626	NM_003072.3	841	Aga/Tga																																																																															
ALK	238	MSKCC	GRCh37	2	29416593	29416593	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0084839-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	347	524	0	ENST00000389048.3:c.4360A>C	p.Lys1454Gln	p.K1454Q	ENST00000389048	NM_004304.4	1454	Aag/Cag																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21343965	21343967	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0084841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	143	370	0	ENST00000215739.8:c.650_651+1del		p.WEdel	ENST00000215739	NM_006767.3	215	tgGGAg/tgg																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2647711	2647711	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	119	291	0	ENST00000342085.4:c.1614G>C	p.Lys538Asn	p.K538N	ENST00000342085	NM_002613.4	538	aaG/aaC																																																																															
GAB2	9846	MSKCC	GRCh37	11	77937753	77937753	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0084841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			853	162	425	0	ENST00000361507.4:c.965C>G	p.Ser322Ter	p.S322*	ENST00000361507	NM_080491.2	322	tCa/tGa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576422	67576422	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs746719882		P-0084841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	162	315	0	ENST00000274335.5:c.701A>G	p.His234Arg	p.H234R	ENST00000274335		234	cAt/cGt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18443788	18443788	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0084841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	67	273	0	ENST00000266497.5:c.762-1G>C		p.X254_splice	ENST00000266497		254																																																																																
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0084843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			877	70	404	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0084843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	44	226	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0084845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	66	544	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52702576	52702576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	31	332	0	ENST00000394830.3:c.322G>A	p.Asp108Asn	p.D108N	ENST00000394830	NM_018313.4	108	Gat/Aat																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344574	118344574	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	100	564	0	ENST00000534358.1:c.2700G>T	p.Gln900His	p.Q900H	ENST00000534358	NM_005933.3	900	caG/caT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0084845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	26	320	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32181947	32181947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	41	516	0	ENST00000375023.3:c.2107G>A	p.Gly703Arg	p.G703R	ENST00000375023	NM_004557.3	703	Ggg/Agg																																																																															
MAX	4149	MSKCC	GRCh37	14	65560500	65560514	+	inframe_deletion	In_Frame_Del	DEL	GTTCCAGTGCATTAT	GTTCCAGTGCATTAT	-			P-0084845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	49	411	0	ENST00000358664.4:c.83_97del	p.His28_Glu32del	p.H28_E32del	ENST00000358664	NM_002382.4	28	cATAATGCACTGGAACga/cga																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246021963	246021963	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	49	408	0	ENST00000388985.4:c.911A>G	p.Gln304Arg	p.Q304R	ENST00000388985		304	cAg/cGg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981770	70981770	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	42	504	0	ENST00000276594.2:c.326G>A	p.Arg109Lys	p.R109K	ENST00000276594	NM_024504.3	109	aGg/aAg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17952337	17952337	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	52	498	0	ENST00000458235.1:c.1003C>A	p.Leu335Met	p.L335M	ENST00000458235	NM_000215.3	335	Ctg/Atg																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30253784	30253785	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0084845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	89	440	0	ENST00000307677.4:c.669_670delinsTT	p.Val224Phe	p.V224F	ENST00000307677	NM_138578.1	223	gtGGtt/gtTTtt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542831	187542831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	45	488	1	ENST00000441802.2:c.4909G>T	p.Val1637Leu	p.V1637L	ENST00000441802	NM_005245.3	1637	Gta/Tta																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858915	57858916	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0084845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	48	546	0	ENST00000228682.2:c.411_412delinsAA	p.Gln138Lys	p.Q138K	ENST00000228682	NM_005269.2	137	gcCCag/gcAAag																																																																															
TP63	8626	MSKCC	GRCh37	3	189456478	189456478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	55	419	0	ENST00000264731.3:c.239C>T	p.Pro80Leu	p.P80L	ENST00000264731	NM_003722.4	80	cCa/cTa																																																																															
CIC	23152	MSKCC	GRCh37	19	42796952	42796952	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			775	55	671	0	ENST00000575354.2:c.3410G>T	p.Gly1137Val	p.G1137V	ENST00000575354	NM_015125.3	1137	gGc/gTc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828123	243828123	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0084845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	36	352	0	ENST00000263826.5:c.235T>G	p.Trp79Gly	p.W79G	ENST00000263826	NM_005465.4	79	Tgg/Ggg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0057992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	99	368	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576896	7576897	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGGAGAGGAG			P-0057992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	97	644	0	ENST00000269305.4:c.939_949dup	p.Gln317ProfsTer32	p.Q317Pfs*32	ENST00000269305	NM_001126112.2	317	cag/cCTCCTCTCCCCag																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62322274	62322274	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs368297230		P-0057992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	55	482	0	ENST00000482936.1:c.2530C>T	p.Arg844Trp	p.R844W	ENST00000482936		844	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0084746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	107	727	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540704	187540704	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	132	714	0	ENST00000441802.2:c.7036A>G	p.Arg2346Gly	p.R2346G	ENST00000441802	NM_005245.3	2346	Aga/Gga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40709545	40709545	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	122	478	0	ENST00000373198.4:c.4357G>T	p.Ala1453Ser	p.A1453S	ENST00000373198	NM_133170.3	1453	Gca/Tca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538913	187538913	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	120	583	0	ENST00000441802.2:c.8827A>G	p.Thr2943Ala	p.T2943A	ENST00000441802	NM_005245.3	2943	Acg/Gcg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560261	95560261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	92	550	0	ENST00000343455.3:c.5328G>T	p.Gln1776His	p.Q1776H	ENST00000343455	NM_177438.2	1776	caG/caT																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64288866	64288866	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	106	454	0	ENST00000370651.3:c.262G>C	p.Val88Leu	p.V88L	ENST00000370651	NM_003463.4	88	Gtg/Ctg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717764	89717764	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0084746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	105	344	0	ENST00000371953.3:c.789del	p.Met264CysfsTer2	p.M264Cfs*2	ENST00000371953	NM_000314.4	263	aaG/aa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55227963	55227963	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	221	527	0	ENST00000275493.2:c.1430G>T	p.Trp477Leu	p.W477L	ENST00000275493	NM_005228.3	477	tGg/tTg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39618790	39618790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	94	339	0	ENST00000262039.4:c.2014G>T	p.Val672Leu	p.V672L	ENST00000262039	NM_002647.2	672	Gtg/Ttg																																																																															
POT1	25913	MSKCC	GRCh37	7	124493159	124493159	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	279	426	0	ENST00000357628.3:c.736A>G	p.Thr246Ala	p.T246A	ENST00000357628	NM_015450.2	246	Acc/Gcc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190656554	190656554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	96	407	0	ENST00000441310.2:c.19G>T	p.Ala7Ser	p.A7S	ENST00000441310	NM_000534.4	7	Gca/Tca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538923	187538923	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	120	593	0	ENST00000441802.2:c.8817C>G	p.Ile2939Met	p.I2939M	ENST00000441802	NM_005245.3	2939	atC/atG																																																																															
ATM	472	MSKCC	GRCh37	11	108205702	108205702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	111	430	0	ENST00000278616.4:c.8017C>T	p.His2673Tyr	p.H2673Y	ENST00000278616	NM_000051.3	2673	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0084777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	281	597	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0084777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	136	480	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0084777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	126	457	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35875645	35875645	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201449880		P-0084777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	74	407	0	ENST00000303115.3:c.832G>A	p.Asp278Asn	p.D278N	ENST00000303115	NM_002185.3	278	Gat/Aat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993710	72993710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	28	578	0	ENST00000268489.5:c.335G>A	p.Ser112Asn	p.S112N	ENST00000268489	NM_006885.3	112	aGc/aAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499814	8499814	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750362550		P-0084777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	65	396	0	ENST00000356435.5:c.2155G>A	p.Glu719Lys	p.E719K	ENST00000356435		719	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129133	152129133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	113	471	1	ENST00000206249.3:c.86C>T	p.Pro29Leu	p.P29L	ENST00000206249	NM_000125.3	29	cCg/cTg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467445	25467445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	112	537	0	ENST00000264709.3:c.1631G>A	p.Arg544His	p.R544H	ENST00000264709	NM_175629.2	544	cGt/cAt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	422282	422282	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	88	420	0	ENST00000399788.2:c.2976G>T	p.Leu992Phe	p.L992F	ENST00000399788	NM_001042603.1	992	ttG/ttT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8526635	8526635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	68	260	0	ENST00000356435.5:c.560C>T	p.Pro187Leu	p.P187L	ENST00000356435		187	cCa/cTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790131	40790131	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	226	498	0	ENST00000373198.4:c.2600A>G	p.His867Arg	p.H867R	ENST00000373198	NM_133170.3	867	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913240		P-0084811-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	89	314	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
MAX	4149	MSKCC	GRCh37	14	65560491	65560491	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0084811-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	78	350	0	ENST00000358664.4:c.106A>T	p.Arg36Trp	p.R36W	ENST00000358664	NM_002382.4	36	Agg/Tgg																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316116	14316116	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0084811-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	12	174	0	ENST00000256196.4:c.309A>C	p.Glu103Asp	p.E103D	ENST00000256196		103	gaA/gaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380303	25380303	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0084811-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	94	295	0	ENST00000256078.4:c.155T>G	p.Leu52Arg	p.L52R	ENST00000256078	NM_033360.2	52	cTc/cGc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986809	36986809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084811-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	26	330	0	ENST00000354822.5:c.880G>A	p.Val294Met	p.V294M	ENST00000354822	NM_001079668.2	294	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0084813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	111	354	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100133	30100133	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370296777		P-0084813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	114	388	0	ENST00000331968.5:c.1487C>T	p.Thr496Met	p.T496M	ENST00000331968	NM_002742.2	496	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0084813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	151	349	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101193	41101193	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	113	376	0	ENST00000373198.4:c.1163A>G	p.His388Arg	p.H388R	ENST00000373198	NM_133170.3	388	cAt/cGt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101199	41101199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368237025		P-0084813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	111	363	0	ENST00000373198.4:c.1157C>T	p.Pro386Leu	p.P386L	ENST00000373198	NM_133170.3	386	cCg/cTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0084813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	104	329	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518900	187518900	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745695748		P-0084813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	33	364	0	ENST00000441802.2:c.12304G>A	p.Gly4102Arg	p.G4102R	ENST00000441802	NM_005245.3	4102	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0084813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	152	391	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0084813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	173	466	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0084813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	138	490	1	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230353	46230378	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAATAATTTATCATTACAGTTTTGGA	AAATAATTTATCATTACAGTTTTGGA	-			P-0084813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	111	255	0	ENST00000334344.6:c.706-17_714del		p.X236_splice	ENST00000334344	NM_152641.2	236																																																																																
IDH2	3418	MSKCC	GRCh37	15	90628072	90628083	+	inframe_deletion	In_Frame_Del	DEL	GCCAGGTCCTTG	GCCAGGTCCTTG	-			P-0084813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	175	526	0	ENST00000330062.3:c.1236_1247del	p.Lys413_Ala416del	p.K413_A416del	ENST00000330062	NM_002168.2	412	acCAAGGACCTGGCg/acg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225360667	225360667	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0084813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	113	306	0	ENST00000264414.4:c.1724T>A	p.Val575Asp	p.V575D	ENST00000264414	NM_003590.4	575	gTt/gAt																																																																															
BCL6	604	MSKCC	GRCh37	3	187444561	187444561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1248764498		P-0084820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	26	524	1	ENST00000232014.4:c.1666C>T	p.Arg556Cys	p.R556C	ENST00000232014	NM_001130845.1	556	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428593	49428594	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0084820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	78	611	0	ENST00000301067.7:c.10355+1_10355+2insA		p.X3452_splice	ENST00000301067	NM_003482.3	3452																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151860126	151860126	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0084820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	114	603	0	ENST00000262189.6:c.10536del	p.Pro3513LeufsTer20	p.P3513Lfs*20	ENST00000262189	NM_170606.2	3512	ccT/cc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061137	38061185	+	stop_gained	Nonsense_Mutation	DEL	GCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCG	GCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCG	T			P-0084820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	41	517	0	ENST00000250448.2:c.804_852delinsA	p.Cys268_Gly284delinsTer	p.C268_G284delins*	ENST00000250448	NM_004496.3	268	tgCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGC/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0084821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	73	536	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49439917	49439917	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1433378692		P-0084821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	62	496	0	ENST00000301067.7:c.4624G>A	p.Asp1542Asn	p.D1542N	ENST00000301067	NM_003482.3	1542	Gat/Aat																																																																															
RB1	5925	MSKCC	GRCh37	13	49039437	49039437	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0084821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	21	376	0	ENST00000267163.4:c.2425del	p.Leu809Ter	p.L809*	ENST00000267163	NM_000321.2	808	Ccc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0084822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	178	543	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0084822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	233	345	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0084822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	165	590	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021250	31021250	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs375215583		P-0084822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	364	492	0	ENST00000375687.4:c.1249C>T	p.Arg417Ter	p.R417*	ENST00000375687	NM_015338.5	417	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862754	9862754	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060503230		P-0084822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	135	475	1	ENST00000330684.3:c.2549C>T	p.Thr850Met	p.T850M	ENST00000330684	NM_001134407.1	850	aCg/aTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056349	27056349	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0084822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	228	478	0	ENST00000324856.7:c.1345C>T	p.Gln449Ter	p.Q449*	ENST00000324856	NM_006015.4	449	Cag/Tag																																																																															
POLE	5426	MSKCC	GRCh37	12	133256114	133256114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs993340577		P-0084822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	183	393	0	ENST00000320574.5:c.547G>A	p.Ala183Thr	p.A183T	ENST00000320574	NM_006231.2	183	Gcc/Acc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120172	70120173	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCAG			P-0084822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	229	438	0	ENST00000245479.2:c.1176_1180dup	p.Arg394ProfsTer11	p.R394Pfs*11	ENST00000245479	NM_000346.3	392	tcc/tCCCAGcc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576812	67576812	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	15	333	0	ENST00000274335.5:c.894G>C	p.Trp298Cys	p.W298C	ENST00000274335		298	tgG/tgC																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739845	46739845	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0084822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	147	488	0	ENST00000371975.4:c.1646T>A	p.Ile549Asn	p.I549N	ENST00000371975	NM_003579.3	549	aTt/aAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578515	7578515	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1212996409		P-0084875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	102	576	0	ENST00000269305.4:c.415A>G	p.Lys139Glu	p.K139E	ENST00000269305	NM_001126112.2	139	Aag/Gag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670377	134670377	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0084875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	49	457	0	ENST00000398015.3:c.288C>A	p.Cys96Ter	p.C96*	ENST00000398015	NM_004441.4	96	tgC/tgA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0084875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	162	336	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PGR	5241	MSKCC	GRCh37	11	100962501	100962501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	34	334	0	ENST00000325455.5:c.1896G>A	p.Met632Ile	p.M632I	ENST00000325455	NM_001202474.3	632	atG/atA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467428	66467428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	46	488	1	ENST00000273854.3:c.841G>A	p.Glu281Lys	p.E281K	ENST00000273854	NM_004439.5	281	Gag/Aag																																																																															
ALB	213	MSKCC	GRCh37	4	74276032	74276032	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768525028		P-0084875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	39	323	0	ENST00000295897.4:c.619G>A	p.Asp207Asn	p.D207N	ENST00000295897	NM_000477.5	207	Gat/Aat																																																																															
SMO	6608	MSKCC	GRCh37	7	128846206	128846206	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761081288		P-0084876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			850	51	528	0	ENST00000249373.3:c.1136C>T	p.Ala379Val	p.A379V	ENST00000249373	NM_005631.4	379	gCg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878176	151878176	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0084876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			815	75	555	0	ENST00000262189.6:c.6769C>T	p.Arg2257Ter	p.R2257*	ENST00000262189	NM_170606.2	2257	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0084876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	22	274	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222334	2222334	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	49	513	0	ENST00000326181.6:c.618C>A	p.Asp206Glu	p.D206E	ENST00000326181	NM_032271.2	206	gaC/gaA																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098968	178098968	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0084876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	39	400	0	ENST00000397062.3:c.77A>C	p.Gln26Pro	p.Q26P	ENST00000397062	NM_006164.4	26	cAa/cCa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732934	30732934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	43	356	0	ENST00000359013.4:c.1622C>A	p.Thr541Lys	p.T541K	ENST00000359013	NM_001024847.2	541	aCg/aAg																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0084885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	57	242	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0084885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	139	394	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912580		P-0084885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	118	264	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578433	7578434	+	stop_gained	Nonsense_Mutation	INS	-	-	ACTGCT			P-0084885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	190	497	0	ENST00000269305.4:c.491_496dup	p.Gln165_Ser166insTer	p.Q165_S166ins*	ENST00000269305	NM_001126112.2	166	tca/tAGCAGTca																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805773	32805773	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0084885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	187	466	0	ENST00000374899.4:c.238A>T	p.Arg80Ter	p.R80*	ENST00000374899	NM_018833.2	80	Aga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0051420-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			602	83	502	0	ENST00000269305.4:c.823dup	p.Cys275LeufsTer31	p.C275Lfs*31	ENST00000269305	NM_001126112.2	275	tgt/tTgt																																																																															
RB1	5925	MSKCC	GRCh37	13	48941638	48941641	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0051420-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			284	48	232	0	ENST00000267163.4:c.951_954del	p.Ser318AsnfsTer13	p.S318Nfs*13	ENST00000267163	NM_000321.2	316	aaTCTT/aa																																																																															
MED12	9968	MSKCC	GRCh37	X	70349948	70349948	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051420-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			289	95	276	0	ENST00000374080.3:c.3931G>T	p.Val1311Leu	p.V1311L	ENST00000374080		1311	Gtg/Ttg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259334	89259334	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051420-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			517	156	487	0	ENST00000336596.2:c.478C>G	p.Arg160Gly	p.R160G	ENST00000336596	NM_005233.5	160	Cgt/Ggt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435608	18435608	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051420-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			629	83	501	0	ENST00000266497.5:c.593T>A	p.Val198Glu	p.V198E	ENST00000266497		198	gTg/gAg																																																																															
HGF	3082	MSKCC	GRCh37	7	81381448	81381448	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051420-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			477	71	377	0	ENST00000222390.5:c.613C>G	p.Gln205Glu	p.Q205E	ENST00000222390	NM_000601.4	205	Cag/Gag																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905991	50905991	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051420-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			671	109	511	0	ENST00000440232.2:c.964del	p.Arg322AlafsTer71	p.R322Afs*71	ENST00000440232	NM_002691.3	321	ggC/gg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266158	198266158	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051420-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			467	84	408	0	ENST00000335508.6:c.2462A>C	p.His821Pro	p.H821P	ENST00000335508	NM_012433.2	821	cAc/cCc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52676029	52676029	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051420-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			393	65	308	0	ENST00000394830.3:c.1028C>A	p.Ser343Ter	p.S343*	ENST00000394830	NM_018313.4	343	tCa/tAa																																																																															
AXL	558	MSKCC	GRCh37	19	41727900	41727900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051420-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			584	80	473	0	ENST00000301178.4:c.525G>T	p.Gln175His	p.Q175H	ENST00000301178	NM_021913.4	175	caG/caT																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968090	68968090	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051420-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			503	51	351	0	ENST00000288368.4:c.1119T>A	p.Asp373Glu	p.D373E	ENST00000288368	NM_024870.2	373	gaT/gaA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0081797-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			212	29	315	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0081797-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			91	26	197	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0081797-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			356	29	327	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439692	51439692	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1363868066		P-0081797-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			366	77	532	0	ENST00000262662.1:c.257T>C	p.Leu86Ser	p.L86S	ENST00000262662		86	tTa/tCa																																																																															
APC	324	MSKCC	GRCh37	5	112173560	112173560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081797-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	63	483	0	ENST00000257430.4:c.2269C>T	p.Gln757Ter	p.Q757*	ENST00000257430	NM_000038.5	757	Caa/Taa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30047521	30047521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081797-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			148	36	282	0	ENST00000331968.5:c.2480G>A	p.Arg827His	p.R827H	ENST00000331968	NM_002742.2	827	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175909	112175909	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0081797-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			338	59	439	0	ENST00000257430.4:c.4618G>T	p.Glu1540Ter	p.E1540*	ENST00000257430	NM_000038.5	1540	Gag/Tag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107939	30107939	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081797-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			453	71	461	0	ENST00000331968.5:c.868C>A	p.Leu290Ile	p.L290I	ENST00000331968	NM_002742.2	290	Ctt/Att																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081797-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			212	103	299	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ETV6	2120	MSKCC	GRCh37	12	11992196	11992197	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0081797-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			398	189	420	0	ENST00000396373.4:c.287dup	p.Leu97AlafsTer15	p.L97Afs*15	ENST00000396373	NM_001987.4	96	ctg/cTtg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710707	117710707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081797-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			361	78	487	1	ENST00000368508.3:c.1565C>T	p.Ala522Val	p.A522V	ENST00000368508	NM_002944.2	522	gCt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579359	7579359	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587780066		P-0084668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	200	477	0	ENST00000269305.4:c.328del	p.Arg110ValfsTer13	p.R110Vfs*13	ENST00000269305	NM_001126112.2	110	Cgt/gt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319965	8319965	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs141403124		P-0084668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	49	338	0	ENST00000356435.5:c.5536G>A	p.Ala1846Thr	p.A1846T	ENST00000356435		1846	Gcg/Acg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852590	63852590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	95	421	0	ENST00000279873.7:c.3368C>T	p.Ser1123Leu	p.S1123L	ENST00000279873	NM_032199.2	1123	tCg/tTg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120851	94120851	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	79	392	0	ENST00000369303.4:c.200C>G	p.Pro67Arg	p.P67R	ENST00000369303	NM_004440.3	67	cCg/cGg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323357	31323357	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	55	355	0	ENST00000412585.2:c.632C>G	p.Thr211Arg	p.T211R	ENST00000412585	NM_005514.6	211	aCa/aGa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411119	63411119	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0084668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	175	485	0	ENST00000330258.3:c.2048C>G	p.Ser683Ter	p.S683*	ENST00000330258	NM_152424.3	683	tCa/tGa																																																																															
MST1	4485	MSKCC	GRCh37	3	49724992	49724993	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	AG			P-0084668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	71	334	0	ENST00000449682.2:c.351_352delinsCT	p.Lys117_Lys118delinsAsnTer	p.K117_K118delinsN*	ENST00000449682	NM_020998.3	117	aaGAaa/aaCTaa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78933992	78933992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	101	405	0	ENST00000306801.3:c.3592G>T	p.Ala1198Ser	p.A1198S	ENST00000306801	NM_020761.2	1198	Gca/Tca																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554347	141554347	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1326373134		P-0084668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	79	377	0	ENST00000220592.5:c.1804C>A	p.Pro602Thr	p.P602T	ENST00000220592	NM_012154.3	602	Ccc/Acc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176709505	176709507	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0084668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			69	83	297	0	ENST00000439151.2:c.5938_5940del	p.Glu1980del	p.E1980del	ENST00000439151	NM_022455.4	1978	GAA/-																																																																															
CASP8	841	MSKCC	GRCh37	2	202149542	202149542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	50	428	0	ENST00000358485.4:c.983C>A	p.Ala328Asp	p.A328D	ENST00000358485	NM_001080125.1	328	gCt/gAt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277852	41277852	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	70	384	0	ENST00000349496.5:c.1816C>G	p.Pro606Ala	p.P606A	ENST00000349496	NM_001904.3	606	Ccc/Gcc																																																																															
RB1	5925	MSKCC	GRCh37	13	48881489	48881490	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0084671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	296	273	0	ENST00000267163.4:c.219_220del	p.Arg73SerfsTer36	p.R73Sfs*36	ENST00000267163	NM_000321.2	71	AGa/a																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692884	89692884	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0084671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			62	155	156	0	ENST00000371953.3:c.368A>C	p.His123Pro	p.H123P	ENST00000371953	NM_000314.4	123	cAc/cCc																																																																															
NF1	4763	MSKCC	GRCh37	17	29554138	29554314	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGCTCTTCCTACTCCTTTTGGGTGGAGCTTATCAGGTTCTCCATTGGCAGGCAGGGCTCTAAGTGCAGTAACTTGATTTGCTGTTGTATTTGCTTAGGAAGAGCAGCACTTCAGAAAAGAGTGATGGCACTGCTGAGGCGCATTGAGCATCCCACTGCAGGAAACACTGAGGTATG	CTGCTCTTCCTACTCCTTTTGGGTGGAGCTTATCAGGTTCTCCATTGGCAGGCAGGGCTCTAAGTGCAGTAACTTGATTTGCTGTTGTATTTGCTTAGGAAGAGCAGCACTTCAGAAAAGAGTGATGGCACTGCTGAGGCGCATTGAGCATCCCACTGCAGGAAACACTGAGGTATG	-			P-0084671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			50	68	143	0	ENST00000358273.4:c.2252-97_2325+6del		p.X751_splice	ENST00000358273	NM_001042492.2	751																																																																																
NF1	4763	MSKCC	GRCh37	17	29665752	29665755	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0084713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	160	376	0	ENST00000358273.4:c.6852_6855del	p.Tyr2285ThrfsTer5	p.Y2285Tfs*5	ENST00000358273	NM_001042492.2	2284	ACTTac/ac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610265	10610265	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0084713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	392	600	0	ENST00000171111.5:c.445G>T	p.Glu149Ter	p.E149*	ENST00000171111	NM_203500.1	149	Gag/Tag																																																																															
AXL	558	MSKCC	GRCh37	19	41754689	41754689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			755	178	534	0	ENST00000301178.4:c.1675G>T	p.Asp559Tyr	p.D559Y	ENST00000301178	NM_021913.4	559	Gac/Tac																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519963		P-0084713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	108	291	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55227977	55227977	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	208	375	0	ENST00000275493.2:c.1444G>T	p.Gly482Trp	p.G482W	ENST00000275493	NM_005228.3	482	Ggg/Tgg																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724698	112724699	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0084713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	157	443	0	ENST00000369452.4:c.583_584del	p.Thr195HisfsTer7	p.T195Hfs*7	ENST00000369452	NM_007373.3	194	ctCAcc/ctcc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221300	1221301	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0084713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	318	576	0	ENST00000326873.7:c.823_824insT	p.Pro275LeufsTer10	p.P275Lfs*10	ENST00000326873	NM_000455.4	275	ccg/cTcg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17389702	17389702	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0084713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	356	486	0	ENST00000359435.4:c.835A>T	p.Lys279Ter	p.K279*	ENST00000359435	NM_001033549.1	279	Aag/Tag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2194513	2194513	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0084713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	241	381	0	ENST00000398665.3:c.589-1G>C		p.X197_splice	ENST00000398665	NM_032482.2	197																																																																																
IDH1	3417	MSKCC	GRCh37	2	209103864	209103864	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0084713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	198	412	0	ENST00000345146.2:c.1085T>C	p.Val362Ala	p.V362A	ENST00000345146	NM_005896.2	362	gTc/gCc																																																																															
NF2	4771	MSKCC	GRCh37	22	30069385	30069385	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0084713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	310	562	0	ENST00000338641.4:c.1251del	p.Arg418AlafsTer8	p.R418Afs*8	ENST00000338641	NM_000268.3	417	aTt/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7579415	7579415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0084719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	189	387	0	ENST00000269305.4:c.272G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tGg/tAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0084719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	63	128	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0084719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	49	146	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	328	350	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640662	3640662	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	153	460	0	ENST00000294008.3:c.2977G>C	p.Glu993Gln	p.E993Q	ENST00000294008	NM_032444.2	993	Gag/Cag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120491091	120491091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	73	362	0	ENST00000256646.2:c.2698C>T	p.Pro900Ser	p.P900S	ENST00000256646	NM_024408.3	900	Cca/Tca																																																																															
CDH1	999	MSKCC	GRCh37	16	68849647	68849663	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TGGAACAGAAAATAACG	TGGAACAGAAAATAACG	-			P-0084719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	125	389	0	ENST00000261769.5:c.1551_1565+2del		p.X517_splice	ENST00000261769	NM_004360.3	517																																																																																
NCOR1	9611	MSKCC	GRCh37	17	16068296	16068299	+	frameshift_variant	Frame_Shift_Del	DEL	TTTC	TTTC	-			P-0084719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	51	121	0	ENST00000268712.3:c.612_615del	p.Lys204AsnfsTer80	p.K204Nfs*80	ENST00000268712	NM_006311.3	204	aaGAAA/aa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACCCCC			P-0084731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	43	481	0	ENST00000275493.2:c.2311_2319dup	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	gac/gACAACCCCCac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0084733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	254	535	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112154935	112154935	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0084733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	262	470	2	ENST00000257430.4:c.1206del	p.Glu403LysfsTer51	p.E403Kfs*51	ENST00000257430	NM_000038.5	402	cgT/cg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354248	15354248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764128043		P-0084733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	182	517	0	ENST00000263377.2:c.2632G>A	p.Ala878Thr	p.A878T	ENST00000263377	NM_058243.2	878	Gct/Act																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001304	150001304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	167	438	0	ENST00000253339.5:c.2300G>T	p.Arg767Leu	p.R767L	ENST00000253339		767	cGt/cTt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41818357	41818357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	185	459	0	ENST00000373198.4:c.17C>T	p.Ala6Val	p.A6V	ENST00000373198	NM_133170.3	6	gCg/gTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100378	157100378	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0084733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	12	146	0	ENST00000346085.5:c.1315G>T	p.Glu439Ter	p.E439*	ENST00000346085	NM_020732.3	439	Gag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACCCCC			P-0084896-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	131	421	0	ENST00000275493.2:c.2311_2319dup	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	gac/gACAACCCCCac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579390	7579393	+	frameshift_variant	Frame_Shift_Del	DEL	GGAA	GGAA	-	rs730882015		P-0084896-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	58	477	0	ENST00000269305.4:c.294_297del	p.Ser99ArgfsTer23	p.S99Rfs*23	ENST00000269305	NM_001126112.2	98	ccTTCC/cc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730778	40730778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084896-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	76	429	0	ENST00000373198.4:c.3757G>A	p.Ala1253Thr	p.A1253T	ENST00000373198	NM_133170.3	1253	Gca/Aca																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374909	149374909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084896-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	30	384	0	ENST00000360632.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000360632	NM_015472.4	62	tCg/tTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934948	9934948	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084896-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	35	304	0	ENST00000330684.3:c.1342G>C	p.Glu448Gln	p.E448Q	ENST00000330684	NM_001134407.1	448	Gag/Cag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484752	57484752	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084896-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	48	429	0	ENST00000371085.3:c.732C>G	p.Ile244Met	p.I244M	ENST00000371085	NM_000516.4	244	atC/atG																																																																															
TOP1	7150	MSKCC	GRCh37	20	39709769	39709809	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTATGTTAACTGTGTATTCATGTTCCCCTTTCTAGTGCTG	ATTATGTTAACTGTGTATTCATGTTCCCCTTTCTAGTGCTG	-			P-0084896-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	14	199	0	ENST00000361337.2:c.432-31_441del		p.X144_splice	ENST00000361337	NM_003286.2	144																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81969832	81969832	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084896-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	31	377	0	ENST00000359376.3:c.2901C>G	p.Ile967Met	p.I967M	ENST00000359376	NM_002661.3	967	atC/atG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0084910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	103	508	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70360547	70360548	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGCGTC			P-0084910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	104	498	0	ENST00000374080.3:c.6108_6114dup	p.Gln2039GlyfsTer14	p.Q2039Gfs*14	ENST00000374080		2036	cag/caGGGCGTCg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539602	187539602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			94	20	504	0	ENST00000441802.2:c.8138C>T	p.Ser2713Leu	p.S2713L	ENST00000441802	NM_005245.3	2713	tCa/tTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242488	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAGCAACATCTCC	TTAAGAGAAGCAACATCTCC	CA	rs121913437		P-0084910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	107	446	1	ENST00000275493.2:c.2239_2258delinsCA	p.Leu747_Pro753delinsGln	p.L747_P753delinsQ	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAACATCTCCg/CAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0080643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	28	251	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs121913468		P-0080643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	27	324	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881329	37881329	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	37	399	0	ENST00000269571.5:c.2521C>G	p.Leu841Val	p.L841V	ENST00000269571		841	Ctc/Gtc																																																																															
RHOA	387	MSKCC	GRCh37	3	49412958	49412958	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0080643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	42	360	0	ENST00000418115.1:c.65T>G	p.Leu22Arg	p.L22R	ENST00000418115	NM_001664.2	22	cTc/cGc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56477566	56477566	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	35	360	0	ENST00000267101.3:c.114del	p.Thr39ProfsTer21	p.T39Pfs*21	ENST00000267101	NM_001982.3	38	gtG/gt																																																																															
CDH1	999	MSKCC	GRCh37	16	68847282	68847288	+	frameshift_variant	Frame_Shift_Del	DEL	GATGCCC	GATGCCC	-			P-0080643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	33	363	0	ENST00000261769.5:c.1204_1210del	p.Asp402ProfsTer13	p.D402Pfs*13	ENST00000261769	NM_004360.3	402	GATGCCCcc/cc																																																																															
CBFB	865	MSKCC	GRCh37	16	67100584	67100584	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0080643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	36	241	0	ENST00000412916.2:c.283-1G>C		p.X95_splice	ENST00000412916		95																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0084485-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			415	188	398	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0084485-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			273	151	486	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																															
BLM	641	MSKCC	GRCh37	15	91337480	91337480	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs764965627		P-0084485-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			281	23	356	0	ENST00000355112.3:c.3103G>C	p.Glu1035Gln	p.E1035Q	ENST00000355112	NM_000057.2	1035	Gaa/Caa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180555	94180555	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084485-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			421	25	312	0	ENST00000323929.3:c.1613C>A	p.Ser538Tyr	p.S538Y	ENST00000323929	NM_005591.3	538	tCt/tAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42058946	42058946	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0084485-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			385	48	461	0	ENST00000219905.7:c.8666A>T	p.Asp2889Val	p.D2889V	ENST00000219905	NM_001164273.1	2889	gAt/gTt																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230492967	230492967	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084485-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			570	128	524	0	ENST00000525115.1:c.225G>C	p.Met75Ile	p.M75I	ENST00000525115		75	atG/atC																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89345553	89345553	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0084485-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			121	18	135	0	ENST00000301030.4:c.7397A>T	p.Tyr2466Phe	p.Y2466F	ENST00000301030	NM_001256183.1	2466	tAc/tTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	71	326	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0084646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	62	258	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291509	15291509	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0084646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	29	406	0	ENST00000263388.2:c.3125A>T	p.Glu1042Val	p.E1042V	ENST00000263388	NM_000435.2	1042	gAg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211354	36211355	+	protein_altering_variant	In_Frame_Ins	INS	-	-	ATG			P-0084646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	123	422	0	ENST00000222270.7:c.1106_1107insTGA	p.Lys369delinsAsnGlu	p.K369delinsNE	ENST00000222270	NM_014727.1	369	aaa/aATGaa																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652410	48652410	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	86	386	0	ENST00000376670.3:c.1081G>T	p.Ala361Ser	p.A361S	ENST00000376670	NM_002049.3	361	Gcc/Tcc																																																																															
APC	324	MSKCC	GRCh37	5	112157654	112157656	+	frameshift_variant	Frame_Shift_Del	DEL	TGA	TGA	GG			P-0084646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	55	264	0	ENST00000257430.4:c.1374_1376delinsGG	p.Phe458LeufsTer9	p.F458Lfs*9	ENST00000257430	NM_000038.5	458	ttTGAt/ttGGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0084702-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	56	293	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0084702-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	107	436	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368317	45368317	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1420438415		P-0084702-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	54	349	0	ENST00000262160.6:c.1285C>T	p.Gln429Ter	p.Q429*	ENST00000262160	NM_005901.5	429	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0084702-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	31	474	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
SUFU	51684	MSKCC	GRCh37	10	104268976	104268977	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGCCCTTCT			P-0084702-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	121	413	0	ENST00000369902.3:c.235_244dup	p.Ala82GlufsTer5	p.A82Efs*5	ENST00000369902	NM_016169.3	78	ggg/ggGAGCCCTTCTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133249329	133249329	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0084702-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	88	531	0	ENST00000320574.5:c.1570T>A	p.Phe524Ile	p.F524I	ENST00000320574	NM_006231.2	524	Ttc/Atc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098814	178098814	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0084702-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	26	392	0	ENST00000397062.3:c.231T>G	p.Asp77Glu	p.D77E	ENST00000397062	NM_006164.4	77	gaT/gaG																																																																															
MET	4233	MSKCC	GRCh37	7	116411887	116411901	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TTCTCTCTGTTTTAA	TTCTCTCTGTTTTAA	-			P-0084704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	23	575	0	ENST00000397752.3:c.2888-16_2888-2del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134873005	134873005	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183234182		P-0084705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	58	502	1	ENST00000398015.3:c.1309G>A	p.Val437Ile	p.V437I	ENST00000398015	NM_004441.4	437	Gtt/Att																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0084705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	110	306	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ATM	472	MSKCC	GRCh37	11	108206578	108206578	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876659942		P-0084705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	38	347	0	ENST00000278616.4:c.8158G>C	p.Asp2720His	p.D2720H	ENST00000278616	NM_000051.3	2720	Gat/Cat																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4094473	4094473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	44	361	0	ENST00000262948.5:c.1070G>T	p.Arg357Leu	p.R357L	ENST00000262948	NM_030662.3	357	cGg/cTg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46281299	46281299	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	60	409	0	ENST00000371998.3:c.4096C>G	p.Pro1366Ala	p.P1366A	ENST00000371998		1366	Cca/Gca																																																																															
TET1	80312	MSKCC	GRCh37	10	70404584	70404584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	54	405	0	ENST00000373644.4:c.2098G>A	p.Asp700Asn	p.D700N	ENST00000373644	NM_030625.2	700	Gac/Aac																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61306975	61306975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	58	473	0	ENST00000341074.5:c.505G>T	p.Gly169Cys	p.G169C	ENST00000341074	NM_002974.2	169	Ggc/Tgc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40451794	40451794	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0084705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	46	399	0	ENST00000345506.4:c.576del	p.Ser193AlafsTer6	p.S193Afs*6	ENST00000345506	NM_003152.3	192	ctG/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0082916-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			241	90	404	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0082916-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			174	82	314	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578466	7578466	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs786202752		P-0083888-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			571	117	640	0	ENST00000269305.4:c.464C>A	p.Thr155Asn	p.T155N	ENST00000269305	NM_001126112.2	155	aCc/aAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0083888-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			450	94	634	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0083888-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			255	44	300	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70352336	70352336	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0084360-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	35	452	0	ENST00000374080.3:c.4363C>T	p.Gln1455Ter	p.Q1455*	ENST00000374080		1455	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115947	8115948	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0084360-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			350	116	418	0	ENST00000346208.3:c.1295dup	p.His433ThrfsTer74	p.H433Tfs*74	ENST00000346208		431	-/C																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111454	8111454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084360-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	54	391	0	ENST00000346208.3:c.940G>T	p.Gly314Trp	p.G314W	ENST00000346208		314	Ggg/Tgg																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33680024	33680024	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs764089655		P-0084360-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			432	39	369	0	ENST00000308377.4:c.2057G>C	p.Ser686Thr	p.S686T	ENST00000308377	NM_152270.3	686	aGc/aCc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61725851	61725851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084360-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			291	43	333	0	ENST00000401558.2:c.716G>A	p.Gly239Glu	p.G239E	ENST00000401558	NM_003400.3	239	gGa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577560	7577560	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0084670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	92	366	0	ENST00000269305.4:c.721del	p.Ser241ProfsTer6	p.S241Pfs*6	ENST00000269305	NM_001126112.2	241	Tcc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0084670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	99	363	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0084670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	196	491	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264066389		P-0084670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	156	395	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
CIC	23152	MSKCC	GRCh37	19	42791714	42791714	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	88	547	0	ENST00000575354.2:c.600C>G	p.Ile200Met	p.I200M	ENST00000575354	NM_015125.3	200	atC/atG																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99152614	99152614	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61757084		P-0084670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	82	464	0	ENST00000074304.5:c.410C>T	p.Thr137Met	p.T137M	ENST00000074304	NM_001134224.1	137	aCg/aTg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39262629	39262629	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	59	331	0	ENST00000402219.2:c.877G>C	p.Asp293His	p.D293H	ENST00000402219	NM_005633.3	293	Gat/Cat																																																																															
ALK	238	MSKCC	GRCh37	2	29416527	29416527	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1353772576		P-0084670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	99	550	0	ENST00000389048.3:c.4426G>A	p.Val1476Met	p.V1476M	ENST00000389048	NM_004304.4	1476	Gtg/Atg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49924744	49924744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	89	498	0	ENST00000296474.3:c.4199C>T	p.Thr1400Ile	p.T1400I	ENST00000296474	NM_002447.2	1400	aCt/aTt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733279	40733279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201275244		P-0084689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	194	511	0	ENST00000373198.4:c.3527G>A	p.Arg1176His	p.R1176H	ENST00000373198	NM_133170.3	1176	cGt/cAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5207965	5207965	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0084689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	135	526	0	ENST00000357368.4:c.5746C>T	p.Arg1916Ter	p.R1916*	ENST00000357368	NM_002850.3	1916	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0084689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	151	318	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472501	88472501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	119	550	0	ENST00000360948.2:c.2054G>A	p.Cys685Tyr	p.C685Y	ENST00000360948	NM_001012338.2	685	tGc/tAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0079607-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	218	475	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0079607-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	95	179	1	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079607-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	24	579	0	ENST00000304494.5:c.242C>G	p.Pro81Arg	p.P81R	ENST00000304494	NM_000077.4	81	cCc/cGc																																																																															
ATM	472	MSKCC	GRCh37	11	108123635	108123635	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079607-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			94	124	324	0	ENST00000278616.4:c.1894G>C	p.Glu632Gln	p.E632Q	ENST00000278616	NM_000051.3	632	Gaa/Caa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911572	114911572	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079607-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	222	501	0	ENST00000543371.1:c.1090A>T	p.Met364Leu	p.M364L	ENST00000543371	NM_001198531.1	364	Atg/Ttg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874168	151874169	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079607-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	327	469	0	ENST00000262189.6:c.8369dup	p.Ser2791IlefsTer3	p.S2791Ifs*3	ENST00000262189	NM_170606.2	2790	gta/gtTa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0063353-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			53	138	331	0				ENST00000310581	NM_198253.2																																																																																	
ERBB2	2064	MSKCC	GRCh37	17	37880219	37880220	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC	rs121913469		P-0063353-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			75	161	370	0	ENST00000269571.5:c.2263_2264delinsCC	p.Leu755Pro	p.L755P	ENST00000269571		755	TTg/CCg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8492958	8492958	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0063353-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			11	60	321	0	ENST00000356435.5:c.2371C>T	p.Gln791Ter	p.Q791*	ENST00000356435		791	Cag/Tag																																																																															
MED12	9968	MSKCC	GRCh37	X	70360666	70360666	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063353-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			95	69	553	0	ENST00000374080.3:c.6226C>A	p.Gln2076Lys	p.Q2076K	ENST00000374080		2076	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs483352695		P-0071041-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			376	99	311	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0071041-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			406	132	350	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866662	37866662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071041-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1387	141	426	0	ENST00000269571.5:c.829G>T	p.Asp277Tyr	p.D277Y	ENST00000269571		277	Gac/Tac																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687502	37687502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071041-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			932	63	364	0	ENST00000447079.4:c.4406G>A	p.Gly1469Glu	p.G1469E	ENST00000447079	NM_015083.1	1469	gGa/gAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268151	153268151	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071041-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			528	68	320	0	ENST00000281708.4:c.657del	p.Gln220AsnfsTer19	p.Q220Nfs*19	ENST00000281708	NM_033632.3	219	ggG/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071041-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			324	36	211	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573614	48573636	+	frameshift_variant	Frame_Shift_Del	DEL	TCATCCTAGTAAATGTGTTACCA	TCATCCTAGTAAATGTGTTACCA	-			P-0071041-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			325	85	326	0	ENST00000342988.3:c.199_221del	p.His67ThrfsTer29	p.H67Tfs*29	ENST00000342988	NM_005359.5	66	gcTCATCCTAGTAAATGTGTTACCAta/gcta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0082279-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			411	57	512	1	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625330	69625330	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082279-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			330	74	472	1	ENST00000334134.2:c.463G>T	p.Val155Leu	p.V155L	ENST00000334134	NM_005247.2	155	Gtg/Ttg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602763	10602763	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082279-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			408	122	471	2	ENST00000171111.5:c.815G>C	p.Arg272Pro	p.R272P	ENST00000171111	NM_203500.1	272	cGc/cCc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467824	99467824	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142608976		P-0082279-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	28	416	0	ENST00000268035.6:c.2693C>T	p.Pro898Leu	p.P898L	ENST00000268035	NM_000875.3	898	cCg/cTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0082279-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			385	70	433	0	ENST00000326873.7:c.841_842dup	p.Leu282ArgfsTer6	p.L282Rfs*6	ENST00000326873	NM_000455.4	279	ggc/ggCCc																																																																															
APC	324	MSKCC	GRCh37	5	112174947	112174947	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082279-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			400	23	404	0	ENST00000257430.4:c.3656C>G	p.Ser1219Cys	p.S1219C	ENST00000257430	NM_000038.5	1219	tCc/tGc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029422	14029422	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0082279-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			508	35	459	0	ENST00000311895.7:c.1633G>T	p.Gly545Ter	p.G545*	ENST00000311895	NM_005236.2	545	Gga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425652	49425652	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082279-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			443	44	513	0	ENST00000301067.7:c.12836C>G	p.Ala4279Gly	p.A4279G	ENST00000301067	NM_003482.3	4279	gCa/gGa																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250602	26250602	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082279-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			474	51	578	0	ENST00000446824.2:c.232G>C	p.Asp78His	p.D78H	ENST00000446824	NM_021018.2	78	Gac/Cac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272459	15272459	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082279-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			454	27	470	0	ENST00000263388.2:c.5980C>G	p.His1994Asp	p.H1994D	ENST00000263388	NM_000435.2	1994	Cac/Gac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943624	9943624	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082279-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			328	53	414	0	ENST00000330684.3:c.1317C>A	p.Phe439Leu	p.F439L	ENST00000330684	NM_001134407.1	439	ttC/ttA																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729887	41729887	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082279-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			338	36	399	0	ENST00000242208.4:c.642del	p.Lys215ArgfsTer144	p.K215Rfs*144	ENST00000242208	NM_002192.2	214	cgG/cg																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770103	56770103	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	124	295	0	ENST00000337432.4:c.99G>T	p.Gln33His	p.Q33H	ENST00000337432	NM_058216.2	33	caG/caT																																																																															
SESN2	83667	MSKCC	GRCh37	1	28586328	28586445	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	GGCGAGCCGCGACCGGGTCCTGGCGCGCACCATGATCGTGGCGGACTCCGAGTGCCGCGCAGAGCTCAAGGACTACCTGCGGTTCGCCCCGGGCGGCGTCGGCGACTCGGGCCCCGGA	GGCGAGCCGCGACCGGGTCCTGGCGCGCACCATGATCGTGGCGGACTCCGAGTGCCGCGCAGAGCTCAAGGACTACCTGCGGTTCGCCCCGGGCGGCGTCGGCGACTCGGGCCCCGGA	-			P-0083138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	26	215	0	ENST00000253063.3:c.-30_88del		p.*10*	ENST00000253063	NM_031459.4																																																																																	
ATM	472	MSKCC	GRCh37	11	108142124	108142125	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0083138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	117	297	0	ENST00000278616.4:c.3069dup	p.Ala1024SerfsTer24	p.A1024Sfs*24	ENST00000278616	NM_000051.3	1023	gga/ggAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0084036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	62	206	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0084036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	152	413	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
NADK	65220	MSKCC	GRCh37	1	1693424	1693424	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	63	248	0	ENST00000341426.5:c.230A>G	p.Lys77Arg	p.K77R	ENST00000341426	NM_023018.4	77	aAg/aGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0084150-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			224	33	295	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0084522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	25	185	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0084522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	78	344	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974676	21974676	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0084522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	67	297	0	ENST00000304494.5:c.150+1G>T		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0084606-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	107	224	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0084606-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	153	401	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591930	48591930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084606-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	72	302	0	ENST00000342988.3:c.1093G>T	p.Gly365Cys	p.G365C	ENST00000342988	NM_005359.5	365	Ggt/Tgt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214463	5214463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084606-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	94	374	0	ENST00000357368.4:c.4523G>A	p.Arg1508Lys	p.R1508K	ENST00000357368	NM_002850.3	1508	aGa/aAa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129888	55129888	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0084606-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	114	307	0	ENST00000257290.5:c.422A>T	p.Glu141Val	p.E141V	ENST00000257290	NM_006206.4	141	gAg/gTg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170145	32170145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084606-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	46	339	0	ENST00000375023.3:c.3463C>T	p.Pro1155Ser	p.P1155S	ENST00000375023	NM_004557.3	1155	Cca/Tca																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195278	102195278	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0084613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	65	317	0	ENST00000263464.3:c.38T>G	p.Leu13Trp	p.L13W	ENST00000263464	NM_001165.4	13	tTg/tGg																																																																															
NF1	4763	MSKCC	GRCh37	17	29556445	29556453	+	frameshift_variant	Frame_Shift_Ins	INS	AAGAATACC	AAGAATACC	CTATTAACAA			P-0084613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	35	326	0	ENST00000358273.4:c.2812_2820delinsCTATTAACAA	p.Lys938LeufsTer9	p.K938Lfs*9	ENST00000358273	NM_001042492.2	938	AAGAATACC/CTATTAACAA																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0084625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	34	259	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0084625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	56	450	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0084625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	48	429	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29546044	29546044	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0084625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	45	356	0	ENST00000358273.4:c.1549G>T	p.Glu517Ter	p.E517*	ENST00000358273	NM_001042492.2	517	Gaa/Taa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146072	38146072	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			798	48	408	0	ENST00000317025.8:c.3434C>G	p.Pro1145Arg	p.P1145R	ENST00000317025	NM_023034.1	1145	cCt/cGt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198273212	198273212	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	45	430	0	ENST00000335508.6:c.998A>G	p.Lys333Arg	p.K333R	ENST00000335508	NM_012433.2	333	aAa/aGa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348020	89348020	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	39	626	0	ENST00000301030.4:c.4930G>T	p.Gly1644Trp	p.G1644W	ENST00000301030	NM_001256183.1	1644	Ggg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604784	48604790	+	frameshift_variant	Frame_Shift_Del	DEL	CTAGACG	CTAGACG	-			P-0084629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	71	517	0	ENST00000342988.3:c.1606_1612del	p.Leu536LysfsTer14	p.L536Kfs*14	ENST00000342988	NM_005359.5	536	CTAGACGaa/aa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936051	71936051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	21	337	0	ENST00000298229.2:c.23C>T	p.Pro8Leu	p.P8L	ENST00000298229	NM_001567.3	8	cCg/cTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	80171640	80171640	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0084629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	55	391	0	ENST00000265081.6:c.3373G>T	p.Glu1125Ter	p.E1125*	ENST00000265081	NM_002439.4	1125	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0084632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	51	372	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0084632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	55	371	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807081	1807081	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0084632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	72	466	0	ENST00000260795.2:c.1413-1G>A		p.X471_splice	ENST00000260795		471																																																																																
KRAS	3845	MSKCC	GRCh37	12	25380254	25380254	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084635-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	28	370	0	ENST00000256078.4:c.204G>C	p.Arg68Ser	p.R68S	ENST00000256078	NM_033360.2	68	agG/agC																																																																															
STK11	6794	MSKCC	GRCh37	19	1207200	1207200	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0084635-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	57	423	0	ENST00000326873.7:c.288del	p.Lys97ArgfsTer6	p.K97Rfs*6	ENST00000326873	NM_000455.4	96	aaG/aa																																																																															
TAP1	6890	MSKCC	GRCh37	6	32820915	32820915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084635-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	19	485	1	ENST00000354258.4:c.679G>A	p.Gly227Ser	p.G227S	ENST00000354258	NM_000593.5	227	Ggc/Agc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0084637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	59	383	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692968	89692968	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0084637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	48	357	0	ENST00000371953.3:c.454del	p.Leu152Ter	p.L152*	ENST00000371953	NM_000314.4	151	gCc/gc																																																																															
ATRX	546	MSKCC	GRCh37	X	76888731	76888731	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			81	60	155	0	ENST00000373344.5:c.5098C>G	p.Leu1700Val	p.L1700V	ENST00000373344	NM_000489.3	1700	Ctt/Gtt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479795	67479795	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs757106110		P-0084647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	59	242	0	ENST00000327367.4:c.1102C>T	p.Arg368Ter	p.R368*	ENST00000327367	NM_005902.3	368	Cga/Tga																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455118	50455118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200163039		P-0084647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	21	203	0	ENST00000331340.3:c.665G>A	p.Arg222His	p.R222H	ENST00000331340	NM_006060.4	222	cGc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199450	16199450	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200367310		P-0084647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	53	286	0	ENST00000375759.3:c.223C>T	p.Arg75Cys	p.R75C	ENST00000375759	NM_015001.2	75	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0084647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	36	224	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
NF1	4763	MSKCC	GRCh37	17	29556461	29556461	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0084647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	37	252	0	ENST00000358273.4:c.2828A>G	p.Lys943Arg	p.K943R	ENST00000358273	NM_001042492.2	943	aAg/aGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0084649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	69	363	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635188	87635188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	46	255	0	ENST00000277120.3:c.2240C>T	p.Thr747Met	p.T747M	ENST00000277120		747	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0084649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	22	189	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575204	48575204	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0084649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	26	211	0	ENST00000342988.3:c.398A>G	p.Tyr133Cys	p.Y133C	ENST00000342988	NM_005359.5	133	tAc/tGc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713609	30713609	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0084649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	26	334	0	ENST00000359013.4:c.1009G>T	p.Glu337Ter	p.E337*	ENST00000359013	NM_001024847.2	337	Gag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0084680-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	76	352	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0084680-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	79	377	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433639	49433639	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084680-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	25	507	1	ENST00000301067.7:c.7914C>G	p.Ile2638Met	p.I2638M	ENST00000301067	NM_003482.3	2638	atC/atG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0084037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	9	252	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119894	70119894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	52	419	0	ENST00000245479.2:c.896C>T	p.Pro299Leu	p.P299L	ENST00000245479	NM_000346.3	299	cCg/cTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11113781	11113781	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	59	448	0	ENST00000344626.4:c.1889G>T	p.Gly630Val	p.G630V	ENST00000344626	NM_003072.3	630	gGc/gTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41408514	41408914	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACAAGATTCTATCCAAAGCCCTCTAATTCTACCACTTCAGTGGTCTGAATCCCACTAATAAACAATCAGGACTTTAGACTCCCTTAATAATGGAGAGAGATTCAAACAAAGATGTTTTGCCACTCTCTGCAAATTCCTGGAGGTGCTGCCTGTTGAACAGGCCGGCAAAATTATGGATTTATTCAGGACTGATTGCATTGAGTATGTAAGCATTTCTGAAGGATTCAAAGAGAAAGAGAGAGTGAGAGATGTTTGTAAGCTGAATGAATGGAAGGGATTGCAGGCTCTATGCTACCCAGTCTGGCATGGATCAAGGCTGTGTTGGGAGGAAGGGAAAGACTTACTGCATGGATGAGCAAGGACCCGGACCTCGTCCACGGCGATGTAGCCAGGATGACCCT	ACAAGATTCTATCCAAAGCCCTCTAATTCTACCACTTCAGTGGTCTGAATCCCACTAATAAACAATCAGGACTTTAGACTCCCTTAATAATGGAGAGAGATTCAAACAAAGATGTTTTGCCACTCTCTGCAAATTCCTGGAGGTGCTGCCTGTTGAACAGGCCGGCAAAATTATGGATTTATTCAGGACTGATTGCATTGAGTATGTAAGCATTTCTGAAGGATTCAAAGAGAAAGAGAGAGTGAGAGATGTTTGTAAGCTGAATGAATGGAAGGGATTGCAGGCTCTATGCTACCCAGTCTGGCATGGATCAAGGCTGTGTTGGGAGGAAGGGAAAGACTTACTGCATGGATGAGCAAGGACCCGGACCTCGTCCACGGCGATGTAGCCAGGATGACCCT	-			P-0084037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			7	25	14	0	ENST00000373198.4:c.512_568+344del		p.X171_splice	ENST00000373198	NM_133170.3	171																																																																																
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0084533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	217	503	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
ERF	2077	MSKCC	GRCh37	19	42754002	42754002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	65	518	0	ENST00000222329.4:c.350C>T	p.Pro117Leu	p.P117L	ENST00000222329	NM_006494.2	117	cCa/cTa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138478063	138478063	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0084534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	28	356	0	ENST00000289153.2:c.123T>G	p.Tyr41Ter	p.Y41*	ENST00000289153	NM_006219.2	41	taT/taG																																																																															
PGR	5241	MSKCC	GRCh37	11	100999096	100999096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	16	486	0	ENST00000325455.5:c.706C>T	p.Leu236Phe	p.L236F	ENST00000325455	NM_001202474.3	236	Ctt/Ttt																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805576	46805576	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0084239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	142	485	0	ENST00000290295.7:c.380T>C	p.Phe127Ser	p.F127S	ENST00000290295	NM_006361.5	127	tTt/tCt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710682	114710682	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0084239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	30	401	0	ENST00000543371.1:c.167A>G	p.Gln56Arg	p.Q56R	ENST00000543371	NM_001198531.1	56	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7572956	7572956	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0084239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	203	436	0	ENST00000269305.4:c.1153T>G	p.Phe385Val	p.F385V	ENST00000269305	NM_001126112.2	385	Ttc/Gtc																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61324142	61324142	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0084239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	163	376	0	ENST00000283752.5:c.691del	p.Val231SerfsTer11	p.V231Sfs*11	ENST00000283752	NM_006919.2	231	Gtc/tc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137313539	137313541	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-			P-0084239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	104	541	0	ENST00000481739.1:c.800_802del	p.Asn267del	p.N267del	ENST00000481739	NM_002957.4	266	acCAAc/acc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0084263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	47	366	0	ENST00000346208.3:c.1003dup	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238758086		P-0084263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	9	453	2	ENST00000358026.2:c.2729C>T	p.Thr910Met	p.T910M	ENST00000358026	NM_001128849.1	910	aCg/aTg																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250649	26250649	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0084263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	59	502	0	ENST00000446824.2:c.185T>A	p.Leu62Gln	p.L62Q	ENST00000446824	NM_021018.2	62	cTg/cAg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960138	134960138	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0084263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			74	23	399	0	ENST00000398015.3:c.2495A>T	p.Asp832Val	p.D832V	ENST00000398015	NM_004441.4	832	gAt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0084424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	522	450	20	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TET1	80312	MSKCC	GRCh37	10	70405777	70405778	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0084424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			789	128	412	0	ENST00000373644.4:c.3297dup	p.Val1100SerfsTer2	p.V1100Sfs*2	ENST00000373644	NM_030625.2	1097	-/A																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610227	10610227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	45	298	0	ENST00000171111.5:c.483G>A	p.Met161Ile	p.M161I	ENST00000171111	NM_203500.1	161	atG/atA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410936	63410936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	41	277	0	ENST00000330258.3:c.2231C>A	p.Ala744Asp	p.A744D	ENST00000330258	NM_152424.3	744	gCc/gAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41551056	41551056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	30	232	0	ENST00000263253.7:c.3200G>A	p.Arg1067His	p.R1067H	ENST00000263253	NM_001429.3	1067	cGt/cAt																																																																															
RB1	5925	MSKCC	GRCh37	13	48954361	48954362	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGG			P-0084468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	24	204	0	ENST00000267163.4:c.1483_1486dup	p.Ala496AspfsTer5	p.A496Dfs*5	ENST00000267163	NM_000321.2	494	-/ATGG																																																																															
TP53	7157	MSKCC	GRCh37	17	7579319	7579320	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TCACAGACTTGGCTGTCCCAGAA			P-0084468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	39	289	0	ENST00000269305.4:c.345_367dup	p.Thr123IlefsTer8	p.T123Ifs*8	ENST00000269305	NM_001126112.2	123	act/aTTCTGGGACAGCCAAGTCTGTGAct																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246093190	246093190	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	41	224	0	ENST00000388985.4:c.581G>T	p.Gly194Val	p.G194V	ENST00000388985		194	gGt/gTt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10252848	10252848	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	89	526	0	ENST00000340748.4:c.3117C>G	p.Ile1039Met	p.I1039M	ENST00000340748		1039	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0084471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	227	471	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0084471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	98	428	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770587	40770587	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776338672		P-0084471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			762	54	401	1	ENST00000373198.4:c.2795G>A	p.Arg932His	p.R932H	ENST00000373198	NM_133170.3	932	cGc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807902	3807902	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0084471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	119	457	0	ENST00000262367.5:c.3517C>T	p.Arg1173Ter	p.R1173*	ENST00000262367	NM_004380.2	1173	Cga/Tga																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749443	41749443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	79	265	0	ENST00000226382.2:c.352G>A	p.Ala118Thr	p.A118T	ENST00000226382	NM_003924.3	118	Gcg/Acg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089777	27089777	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0084471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	124	492	0	ENST00000324856.7:c.2732+1G>A		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0084474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	219	498	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517201		P-0084474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	96	287	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																															
TP63	8626	MSKCC	GRCh37	3	189586425	189586425	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	27	448	0	ENST00000264731.3:c.1049G>C	p.Arg350Thr	p.R350T	ENST00000264731	NM_003722.4	350	aGa/aCa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717609	89717609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs876661024		P-0084474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	32	352	0	ENST00000371953.3:c.635-1G>A		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																																
SMAD3	4088	MSKCC	GRCh37	15	67473672	67473672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	76	478	0	ENST00000327367.4:c.752C>T	p.Ser251Leu	p.S251L	ENST00000327367	NM_005902.3	251	tCg/tTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112287	115112287	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0084474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	97	499	0	ENST00000257566.3:c.1453C>T	p.Gln485Ter	p.Q485*	ENST00000257566	NM_016569.3	485	Cag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247321	153247321	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0084474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	205	503	0	ENST00000281708.4:c.1481T>A	p.Leu494Ter	p.L494*	ENST00000281708	NM_033632.3	494	tTa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0084500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	77	473	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578509	7578509	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519978		P-0084500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	146	521	0	ENST00000269305.4:c.421T>C	p.Cys141Arg	p.C141R	ENST00000269305	NM_001126112.2	141	Tgc/Cgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0084546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	120	484	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
JUN	3725	MSKCC	GRCh37	1	59248385	59248385	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs370449022		P-0084546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	102	477	0	ENST00000371222.2:c.358G>T	p.Glu120Ter	p.E120*	ENST00000371222	NM_002228.3	120	Gaa/Taa																																																																															
RB1	5925	MSKCC	GRCh37	13	49027190	49027194	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAA	TTGAA	-			P-0084546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	39	327	0	ENST00000267163.4:c.1758_1762del	p.Glu587CysfsTer5	p.E587Cfs*5	ENST00000267163	NM_000321.2	586	cTTGAA/c																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138453580	138453580	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0084546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	40	386	0	ENST00000289153.2:c.868A>T	p.Lys290Ter	p.K290*	ENST00000289153	NM_006219.2	290	Aag/Tag																																																																															
FLT3	2322	MSKCC	GRCh37	13	28588682	28588682	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	24	319	0	ENST00000241453.7:c.2766G>T	p.Met922Ile	p.M922I	ENST00000241453	NM_004119.2	922	atG/atT																																																																															
UPF1	5976	MSKCC	GRCh37	19	18966766	18966766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	74	454	0	ENST00000262803.5:c.1577C>T	p.Ala526Val	p.A526V	ENST00000262803	NM_002911.3	526	gCc/gTc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225346753	225346753	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0084546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	37	318	0	ENST00000264414.4:c.1885A>T	p.Arg629Ter	p.R629*	ENST00000264414	NM_003590.4	629	Aga/Tga																																																																															
SESN3	143686	MSKCC	GRCh37	11	94917757	94917757	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0084546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	18	362	0	ENST00000536441.1:c.764T>C	p.Ile255Thr	p.I255T	ENST00000536441	NM_144665.3	255	aTt/aCt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416711	121416711	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	62	476	0	ENST00000257555.6:c.140G>T	p.Gly47Val	p.G47V	ENST00000257555		47	gGg/gTg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187218	38187218	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	63	461	0	ENST00000317025.8:c.1259G>T	p.Arg420Leu	p.R420L	ENST00000317025	NM_023034.1	420	cGa/cTa																																																																															
JUN	3725	MSKCC	GRCh37	1	59248288	59248288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	51	461	0	ENST00000371222.2:c.455G>T	p.Gly152Val	p.G152V	ENST00000371222	NM_002228.3	152	gGg/gTg																																																																															
ATR	545	MSKCC	GRCh37	3	142222282	142222282	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	29	345	0	ENST00000350721.4:c.5210A>G	p.His1737Arg	p.H1737R	ENST00000350721	NM_001184.3	1737	cAt/cGt																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519912		P-0084589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			78	119	242	0	ENST00000374080.3:c.3670C>G	p.Leu1224Val	p.L1224V	ENST00000374080		1224	Ctc/Gtc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249396	153249396	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	29	386	0	ENST00000281708.4:c.1382C>G	p.Thr461Ser	p.T461S	ENST00000281708	NM_033632.3	461	aCt/aGt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157488206	157488206	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	148	435	0	ENST00000346085.5:c.2912G>T	p.Gly971Val	p.G971V	ENST00000346085	NM_020732.3	971	gGa/gTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151960210	151960210	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0084589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			74	45	115	0	ENST00000262189.6:c.1190C>A	p.Ser397Ter	p.S397*	ENST00000262189	NM_170606.2	397	tCg/tAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604789	48604789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	147	492	0	ENST00000342988.3:c.1611C>G	p.Asp537Glu	p.D537E	ENST00000342988	NM_005359.5	537	gaC/gaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578552	7578552	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	370	522	0	ENST00000269305.4:c.378C>A	p.Tyr126Ter	p.Y126*	ENST00000269305	NM_001126112.2	126	taC/taA																																																																															
APC	324	MSKCC	GRCh37	5	112174268	112174268	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	187	533	0	ENST00000257430.4:c.2977A>T	p.Lys993Ter	p.K993*	ENST00000257430	NM_000038.5	993	Aag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112174310	112174310	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	149	543	0	ENST00000257430.4:c.3022del	p.Ile1008TyrfsTer14	p.I1008Yfs*14	ENST00000257430	NM_000038.5	1007	Aaa/aa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69129929	69129929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	120	423	0	ENST00000288368.4:c.4683G>T	p.Gln1561His	p.Q1561H	ENST00000288368	NM_024870.2	1561	caG/caT																																																																															
KDR	3791	MSKCC	GRCh37	4	55981161	55981161	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	23	433	0	ENST00000263923.4:c.538G>T	p.Asp180Tyr	p.D180Y	ENST00000263923	NM_002253.2	180	Gac/Tac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044700	47044700	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	171	731	0	ENST00000329236.7:c.1867-1G>T		p.X623_splice	ENST00000329236	NM_001204466.1	623																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	133	309	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920377	114920377	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	157	378	0	ENST00000543371.1:c.1319-1G>A		p.X440_splice	ENST00000543371	NM_001198531.1	440																																																																																
CTR9	9646	MSKCC	GRCh37	11	10777241	10777241	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	118	363	0	ENST00000361367.2:c.401G>C	p.Arg134Thr	p.R134T	ENST00000361367	NM_014633.3	134	aGa/aCa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162394447	162394447	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	77	375	0	ENST00000366898.1:c.621A>T	p.Glu207Asp	p.E207D	ENST00000366898	NM_004562.2	207	gaA/gaT																																																																															
KLF5	688	MSKCC	GRCh37	13	73636668	73636668	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	545	619	0	ENST00000377687.4:c.931A>C	p.Ser311Arg	p.S311R	ENST00000377687	NM_001730.3	311	Agt/Cgt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131976419	131976419	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	195	463	0	ENST00000265335.6:c.3674G>C	p.Cys1225Ser	p.C1225S	ENST00000265335		1225	tGt/tCt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981833	70981833	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	97	598	0	ENST00000276594.2:c.263C>G	p.Pro88Arg	p.P88R	ENST00000276594	NM_024504.3	88	cCt/cGt																																																																															
MET	4233	MSKCC	GRCh37	7	116397770	116397770	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	181	433	0	ENST00000397752.3:c.2044C>A	p.Leu682Ile	p.L682I	ENST00000397752	NM_000245.2	682	Cta/Ata																																																																															
CTR9	9646	MSKCC	GRCh37	11	10777280	10777280	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	155	430	0	ENST00000361367.2:c.440A>C	p.Gln147Pro	p.Q147P	ENST00000361367	NM_014633.3	147	cAa/cCa																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139794937	139794937	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	190	456	0	ENST00000247668.2:c.331G>T	p.Gly111Ter	p.G111*	ENST00000247668	NM_021138.3	111	Gga/Tga																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609684	117609684	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	132	409	0	ENST00000368508.3:c.7015C>A	p.His2339Asn	p.H2339N	ENST00000368508	NM_002944.2	2339	Cac/Aac																																																																															
ERG	2078	MSKCC	GRCh37	21	39763597	39763597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	139	356	0	ENST00000288319.7:c.855C>A	p.Asp285Glu	p.D285E	ENST00000288319	NM_182918.3	285	gaC/gaA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628095	187628095	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	240	558	0	ENST00000441802.2:c.2887A>G	p.Arg963Gly	p.R963G	ENST00000441802	NM_005245.3	963	Aga/Gga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180049759	180049759	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	90	464	0	ENST00000261937.6:c.1629T>G	p.Asp543Glu	p.D543E	ENST00000261937	NM_182925.4	543	gaT/gaG																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902537	1902537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	50	578	0	ENST00000382895.3:c.156G>T	p.Gln52His	p.Q52H	ENST00000382895	NM_133330.2	52	caG/caT																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239775	31239775	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	169	446	0	ENST00000376228.5:c.73+1G>C		p.X25_splice	ENST00000376228	NM_002117.5	25																																																																																
MYC	4609	MSKCC	GRCh37	8	128753136	128753136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			739	251	509	0	ENST00000377970.2:c.1297G>A	p.Asp433Asn	p.D433N	ENST00000377970	NM_002467.4	433	Gac/Aac																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781212	135781212	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	347	553	0	ENST00000298552.3:c.1753C>G	p.Pro585Ala	p.P585A	ENST00000298552	NM_001162426.1	585	Cct/Gct																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0083851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	312	335	0	ENST00000346208.3:c.1003dup	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
SESN1	27244	MSKCC	GRCh37	6	109322510	109322510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	22	385	0	ENST00000436639.2:c.527G>A	p.Arg176His	p.R176H	ENST00000436639	NM_014454.2	176	cGt/cAt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0084425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	46	415	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115955	8115956	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0084426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	98	547	0	ENST00000346208.3:c.1305dup	p.Ser436LeufsTer71	p.S436Lfs*71	ENST00000346208		434	cac/caCc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514386	103514388	+	missense_variant	Missense_Mutation	ONP	AAG	AAG	CAT			P-0084426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	57	345	0	ENST00000355739.4:c.887_889delinsCAT	p.Gln296_Ala297delinsProSer	p.Q296_A297delinsPS	ENST00000355739	NM_000123.3	296	cAAGct/cCATct																																																																															
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0084480-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			66	129	426	0	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0084480-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			105	240	473	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374245	138374245	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084480-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			174	57	316	0	ENST00000289153.2:c.3199G>T	p.Asp1067Tyr	p.D1067Y	ENST00000289153	NM_006219.2	1067	Gac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112174253	112174253	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0084480-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			94	37	432	0	ENST00000257430.4:c.2962G>T	p.Glu988Ter	p.E988*	ENST00000257430	NM_000038.5	988	Gaa/Taa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866632	37866632	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773759626		P-0084480-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			147	104	460	0	ENST00000269571.5:c.799C>T	p.His267Tyr	p.H267Y	ENST00000269571		267	Cac/Tac																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468118	120468118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084480-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			231	69	482	0	ENST00000256646.2:c.4321G>A	p.Glu1441Lys	p.E1441K	ENST00000256646	NM_024408.3	1441	Gag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108196922	108196922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084480-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			182	49	326	0	ENST00000278616.4:c.6945G>A	p.Met2315Ile	p.M2315I	ENST00000278616	NM_000051.3	2315	atG/atA																																																																															
NF1	4763	MSKCC	GRCh37	17	29560043	29560043	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs868450405		P-0084480-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	64	403	0	ENST00000358273.4:c.3520C>T	p.Gln1174Ter	p.Q1174*	ENST00000358273	NM_001042492.2	1174	Cag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29554557	29554557	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs199474763		P-0084480-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			124	62	256	0	ENST00000358273.4:c.2342A>C	p.His781Pro	p.H781P	ENST00000358273	NM_001042492.2	781	cAt/cCt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374291	138374291	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0084480-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			172	42	314	0	ENST00000289153.2:c.3153A>T	p.Glu1051Asp	p.E1051D	ENST00000289153	NM_006219.2	1051	gaA/gaT																																																																															
MED12	9968	MSKCC	GRCh37	X	70354958	70354958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084480-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			207	38	428	0	ENST00000374080.3:c.4880G>T	p.Arg1627Leu	p.R1627L	ENST00000374080		1627	cGc/cTc																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40683755	40683755	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0084480-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			137	35	320	0	ENST00000249776.8:c.747G>T	p.Met249Ile	p.M249I	ENST00000249776	NM_033286.3	249	atG/atT																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943713	71943713	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084480-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			176	120	403	0	ENST00000298229.2:c.1756G>T	p.Gly586Cys	p.G586C	ENST00000298229	NM_001567.3	586	Ggc/Tgc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729337	41729337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084480-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			195	51	351	0	ENST00000242208.4:c.1192C>T	p.Pro398Ser	p.P398S	ENST00000242208	NM_002192.2	398	Ccc/Tcc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672711	86672719	+	inframe_deletion	In_Frame_Del	DEL	AGGAACTTC	AGGAACTTC	-			P-0084480-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			58	79	343	0	ENST00000274376.6:c.2199_2207del	p.Lys733_His736delinsAsn	p.K733_H736delinsN	ENST00000274376	NM_002890.2	733	aAGGAACTTCat/aat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528675	8528675	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084480-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			138	37	396	0	ENST00000356435.5:c.457C>A	p.Pro153Thr	p.P153T	ENST00000356435		153	Ccg/Acg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448625	89448626	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0084480-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			135	77	364	1	ENST00000336596.2:c.1589_1590delinsAG	p.Pro530Gln	p.P530Q	ENST00000336596	NM_005233.5	530	cCA/cAG																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105929	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	GTG	GTG	TT			P-0084480-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			153	115	461	3	ENST00000324856.7:c.5540_5542delinsTT	p.Gly1847ValfsTer36	p.G1847Vfs*36	ENST00000324856	NM_006015.4	1847	gGTGgg/gTTgg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570242	87570244	+	missense_variant	Missense_Mutation	ONP	CCA	CCA	ACC			P-0084480-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			91	156	395	0	ENST00000277120.3:c.1982_1984delinsACC	p.Pro661_Thr662delinsHisPro	p.P661_T662delinsHP	ENST00000277120		661	cCCAcg/cACCcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587782289		P-0084517-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	78	364	0	ENST00000269305.4:c.706T>C	p.Tyr236His	p.Y236H	ENST00000269305	NM_001126112.2	236	Tac/Cac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0084517-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	46	388	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969330	44969330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084517-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	34	342	0	ENST00000377967.4:c.4012G>A	p.Val1338Ile	p.V1338I	ENST00000377967	NM_021140.2	1338	Gtt/Att																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521549	46521549	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	27	330	0	ENST00000262741.5:c.859G>T	p.Asp287Tyr	p.D287Y	ENST00000262741	NM_003629.3	287	Gac/Tac																																																																															
PHF6	84295	MSKCC	GRCh37	X	133547644	133547644	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	60	375	0	ENST00000332070.3:c.542C>G	p.Ser181Cys	p.S181C	ENST00000332070	NM_032458.2	181	tCc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0084536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	80	250	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30325846	30325846	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763509688		P-0084536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	64	378	0	ENST00000322652.5:c.2044C>T	p.Arg682Cys	p.R682C	ENST00000322652	NM_015355.2	682	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578247	7578247	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0084536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	80	503	0	ENST00000269305.4:c.602del	p.Leu201CysfsTer46	p.L201Cfs*46	ENST00000269305	NM_001126112.2	201	tTg/tg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913382		P-0084536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	96	454	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63553984	63553985	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	G			P-0084536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	107	461	0	ENST00000307078.5:c.754_755delinsC	p.Ser252ProfsTer4	p.S252Pfs*4	ENST00000307078	NM_004655.3	252	AGc/Cc																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43738991	43738992	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0084536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	84	392	0	ENST00000523873.1:c.8_9insA	p.Phe3LeufsTer65	p.F3Lfs*65	ENST00000523873		3	ttt/ttAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0083119-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			321	69	315	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0083892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			176	164	364	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138453486	138453486	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1451809865		P-0083892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			342	72	222	0	ENST00000289153.2:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000289153	NM_006219.2	321	cGa/cAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519739		P-0083892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			190	152	339	0	ENST00000342988.3:c.1051G>A	p.Asp351Asn	p.D351N	ENST00000342988	NM_005359.5	351	Gat/Aat																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670708	134670708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			539	93	426	0	ENST00000398015.3:c.619C>T	p.Pro207Ser	p.P207S	ENST00000398015	NM_004441.4	207	Cca/Tca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717730	89717731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0083892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			170	92	249	0	ENST00000371953.3:c.756dup	p.Ile253TyrfsTer45	p.I253Yfs*45	ENST00000371953	NM_000314.4	252	gat/gaTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47139446	47139446	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0083892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			191	129	265	0	ENST00000409792.3:c.5141C>G	p.Ser1714Ter	p.S1714*	ENST00000409792	NM_014159.6	1714	tCa/tGa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410136	139410136	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs562413261		P-0083892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			385	116	381	0	ENST00000277541.6:c.1702G>A	p.Asp568Asn	p.D568N	ENST00000277541	NM_017617.3	568	Gat/Aat																																																																															
DDR2	4921	MSKCC	GRCh37	1	162749990	162749990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			298	300	342	0	ENST00000367921.3:c.2522C>T	p.Ser841Leu	p.S841L	ENST00000367921	NM_006182.2	841	tCa/tTa																																																																															
ABL1	25	MSKCC	GRCh37	9	133730235	133730235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			298	118	281	0	ENST00000318560.5:c.301G>A	p.Glu101Lys	p.E101K	ENST00000318560	NM_005157.4	101	Gaa/Aaa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5123014	5123014	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			176	97	247	0	ENST00000381652.3:c.3070G>C	p.Glu1024Gln	p.E1024Q	ENST00000381652	NM_004972.3	1024	Gaa/Caa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118390509	118390510	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	CT			P-0083892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			204	127	388	0	ENST00000534358.1:c.11321+2_11321+3insCT		p.X3774_splice	ENST00000534358	NM_005933.3	3774																																																																																
BCL6	604	MSKCC	GRCh37	3	187451392	187451392	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			489	143	326	0	ENST00000232014.4:c.90C>G	p.Ile30Met	p.I30M	ENST00000232014	NM_001130845.1	30	atC/atG																																																																															
NUF2	83540	MSKCC	GRCh37	1	163317552	163317552	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0083892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			294	54	256	0	ENST00000271452.3:c.949-1G>C		p.X317_splice	ENST00000271452	NM_145697.2	317																																																																																
NUF2	83540	MSKCC	GRCh37	1	163317586	163317586	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	68	280	0	ENST00000271452.3:c.982G>C	p.Glu328Gln	p.E328Q	ENST00000271452	NM_145697.2	328	Gag/Cag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0084265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	66	543	0	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151891600	151891600	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0084265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	63	454	0	ENST00000262189.6:c.4432C>T	p.Gln1478Ter	p.Q1478*	ENST00000262189	NM_170606.2	1478	Cag/Tag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934028	39934028	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0084265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	119	609	2	ENST00000378444.4:c.571T>A	p.Trp191Arg	p.W191R	ENST00000378444	NM_001123385.1	191	Tgg/Agg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747975	41747975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	27	240	0	ENST00000226382.2:c.794C>T	p.Ala265Val	p.A265V	ENST00000226382	NM_003924.3	265	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112178439	112178439	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754320004		P-0084265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	117	564	0	ENST00000257430.4:c.7148G>A	p.Gly2383Asp	p.G2383D	ENST00000257430	NM_000038.5	2383	gGt/gAt																																																																															
NUF2	83540	MSKCC	GRCh37	1	163317715	163317715	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199764107		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	73	300	0	ENST00000271452.3:c.1111C>T	p.Arg371Cys	p.R371C	ENST00000271452	NM_145697.2	371	Cgc/Tgc																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230493045	230493045	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	136	356	0	ENST00000525115.1:c.147del	p.Ser50AlafsTer44	p.S50Afs*44	ENST00000525115		49	ccC/cc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106730	27106730	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773818181		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	114	494	0	ENST00000324856.7:c.6341C>T	p.Pro2114Leu	p.P2114L	ENST00000324856	NM_006015.4	2114	cCg/cTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	127	406	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																															
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	102	363	5	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692940	89692940	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746152219		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	80	337	1	ENST00000371953.3:c.424C>T	p.Arg142Trp	p.R142W	ENST00000371953	NM_000314.4	142	Cgg/Tgg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913294		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	93	301	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	98	324	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108142001	108142001	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749471737		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	123	302	0	ENST00000278616.4:c.2945G>A	p.Arg982His	p.R982H	ENST00000278616	NM_000051.3	982	cGt/cAt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	171	454	1	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	93	312	1	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	123	352	0	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	111	418	1	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287469	46287469	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	91	341	0	ENST00000334344.6:c.5333del	p.Asn1778IlefsTer13	p.N1778Ifs*13	ENST00000334344	NM_152641.2	1776	ttA/tt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	498235	498235	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	98	282	0	ENST00000399788.2:c.23del	p.Gly8AlafsTer58	p.G8Afs*58	ENST00000399788	NM_001042603.1	8	gGc/gc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864218	57864218	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	145	523	3	ENST00000228682.2:c.1700del	p.Pro567LeufsTer46	p.P567Lfs*46	ENST00000228682	NM_005269.2	565	ttC/tt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524568	103524568	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	101	317	1	ENST00000355739.4:c.2705del	p.Asn902IlefsTer4	p.N902Ifs*4	ENST00000355739	NM_000123.3	900	cAa/ca																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435550	110435550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746157298		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	113	311	0	ENST00000375856.3:c.2851G>A	p.Ala951Thr	p.A951T	ENST00000375856	NM_003749.2	951	Gcc/Acc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26970492	26970492	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	32	252	0	ENST00000381527.3:c.860+1G>A		p.X287_splice	ENST00000381527	NM_001260.1	287																																																																																
FOXO1	2308	MSKCC	GRCh37	13	41134159	41134159	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140386357		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	135	453	0	ENST00000379561.5:c.1469G>A	p.Arg490Gln	p.R490Q	ENST00000379561	NM_002015.3	490	cGg/cAg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060912	38060912	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	9	418	0	ENST00000250448.2:c.1077del	p.Ile360Ter	p.I360*	ENST00000250448	NM_004496.3	359	ccC/cc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609330	81609330	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121908882		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	136	372	0	ENST00000298171.2:c.928C>T	p.Arg310Cys	p.R310C	ENST00000298171	NM_000369.2	310	Cgc/Tgc																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51514572	51514572	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28757184		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	118	331	0	ENST00000260433.2:c.602C>T	p.Thr201Met	p.T201M	ENST00000260433		201	aCg/aTg																																																																															
BLM	641	MSKCC	GRCh37	15	91310208	91310208	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs747341586		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	72	318	1	ENST00000355112.3:c.2268del	p.Asp757ThrfsTer4	p.D757Tfs*4	ENST00000355112	NM_000057.2	754	tcA/tc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467855	99467856	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	103	399	0	ENST00000268035.6:c.2732_2733dup	p.Gly912LeufsTer26	p.G912Lfs*26	ENST00000268035	NM_000875.3	908	-/TC																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89371649	89371649	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750217123		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	138	398	0	ENST00000301030.4:c.191C>T	p.Ala64Val	p.A64V	ENST00000301030	NM_001256183.1	64	gCg/gTg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264357	30264357	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	93	275	0	ENST00000322652.5:c.92T>C	p.Val31Ala	p.V31A	ENST00000322652	NM_015355.2	31	gTg/gCg																																																																															
RARA	5914	MSKCC	GRCh37	17	38512369	38512370	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	77	219	0	ENST00000254066.5:c.1286dup	p.Gly430TrpfsTer16	p.G430Wfs*16	ENST00000254066	NM_000964.3	427	ccg/ccGg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370236	40370236	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764965457		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	75	461	10	ENST00000293328.3:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000293328	NM_012448.3	368	Cag/ag																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40458461	40458461	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	94	341	0	ENST00000345506.4:c.1676A>G	p.Asn559Ser	p.N559S	ENST00000345506	NM_003152.3	559	aAc/aGc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40462611	40462611	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149261935		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	143	386	0	ENST00000345506.4:c.2309G>A	p.Arg770Gln	p.R770Q	ENST00000345506	NM_003152.3	770	cGa/cAa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	176	454	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492782	56492783	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	158	390	0	ENST00000407977.2:c.156dup	p.Lys54GlufsTer21	p.K54Efs*21	ENST00000407977		52	-/C																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533732	63533733	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGG	rs570443161		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	111	500	0	ENST00000307078.5:c.1419_1421dup	p.His474dup	p.H474dup	ENST00000307078	NM_004655.3	474	cat/caCCAt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533904	63533904	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201460658		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	109	404	0	ENST00000307078.5:c.1250C>T	p.Ala417Val	p.A417V	ENST00000307078	NM_004655.3	417	gCg/gTg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39609395	39609395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	93	244	0	ENST00000262039.4:c.1697G>A	p.Arg566His	p.R566H	ENST00000262039	NM_002647.2	566	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584514	48584514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	40	376	0	ENST00000342988.3:c.692del	p.Gly231AlafsTer10	p.G231Afs*10	ENST00000342988	NM_005359.5	229	ctG/ct																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	110	372	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604668	48604668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	70	397	0	ENST00000342988.3:c.1490G>A	p.Arg497His	p.R497H	ENST00000342988	NM_005359.5	497	cGc/cAc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250770	10250770	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1290055474		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	145	393	0	ENST00000340748.4:c.3710C>T	p.Ser1237Leu	p.S1237L	ENST00000340748		1237	tCg/tTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132617	11132617	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1445478818		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	117	422	1	ENST00000344626.4:c.2833G>A	p.Ala945Thr	p.A945T	ENST00000344626	NM_003072.3	945	Gca/Aca																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355204	15355204	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147958185		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	104	414	0	ENST00000263377.2:c.2419G>A	p.Val807Ile	p.V807I	ENST00000263377	NM_058243.2	807	Gtc/Atc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1620978	1620979	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	131	514	0	ENST00000344749.5:c.1081dup	p.Gln361ProfsTer32	p.Q361Pfs*32	ENST00000344749	NM_001136139.2	361	cag/cCag																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621869	1621869	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1477354195		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	122	397	0	ENST00000344749.5:c.923C>T	p.Thr308Met	p.T308M	ENST00000344749	NM_001136139.2	308	aCg/aTg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19258515	19258515	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146991038		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	112	448	0	ENST00000162023.5:c.385C>T	p.Arg129Trp	p.R129W	ENST00000162023		129	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224152	36224153	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	63	319	0	ENST00000222270.7:c.6707dup	p.Gly2237ArgfsTer66	p.G2237Rfs*66	ENST00000222270	NM_014727.1	2234	-/C																																																																															
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	102	380	2	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753351	42753353	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	163	484	0	ENST00000222329.4:c.911_913del	p.Ser304del	p.S304del	ENST00000222329	NM_006494.2	304	tCCTtc/ttc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50921136	50921136	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs963136799		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	100	322	0	ENST00000440232.2:c.3256C>T	p.Arg1086Trp	p.R1086W	ENST00000440232	NM_002691.3	1086	Cgg/Tgg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716241	52716241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	54	434	0	ENST00000322088.6:c.685G>A	p.Val229Met	p.V229M	ENST00000322088	NM_014225.5	229	Gtg/Atg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225365174	225365174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	124	344	0	ENST00000264414.4:c.1516C>T	p.Arg506Trp	p.R506W	ENST00000264414	NM_003590.4	506	Cgg/Tgg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660037	227660037	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763295813		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	161	460	0	ENST00000305123.5:c.3418C>T	p.Arg1140Cys	p.R1140C	ENST00000305123	NM_005544.2	1140	Cgc/Tgc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794922	242794922	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs568397742		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	143	450	0	ENST00000334409.5:c.287G>A	p.Arg96His	p.R96H	ENST00000334409	NM_005018.2	96	cGt/cAt																																																																															
ALK	238	MSKCC	GRCh37	2	30143052	30143052	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	62	459	0	ENST00000389048.3:c.474del	p.Glu160ArgfsTer26	p.E160Rfs*26	ENST00000389048	NM_004304.4	158	ccC/cc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703631	47703631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63750636		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	130	357	0	ENST00000233146.2:c.2131C>T	p.Arg711Ter	p.R711*	ENST00000233146	NM_000251.2	711	Cga/Tga																																																																															
MSH6	2956	MSKCC	GRCh37	2	48028049	48028049	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs63751113		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	131	442	0	ENST00000234420.5:c.2927G>A	p.Arg976His	p.R976H	ENST00000234420	NM_000179.2	976	cGt/cAt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	133	446	8	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31386391	31386391	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1051749732		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	125	376	1	ENST00000328111.2:c.1616G>A	p.Arg539Gln	p.R539Q	ENST00000328111	NM_006892.3	539	cGg/cAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790066	40790066	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1357627666		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	111	448	0	ENST00000373198.4:c.2665C>T	p.Arg889Trp	p.R889W	ENST00000373198	NM_133170.3	889	Cgg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877391	40877391	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372713520		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	117	373	0	ENST00000373198.4:c.2305G>A	p.Val769Met	p.V769M	ENST00000373198	NM_133170.3	769	Gtg/Atg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279814	46279815	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA	rs761922431		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	101	496	1	ENST00000371998.3:c.3759_3761dup	p.Gln1276dup	p.Q1276dup	ENST00000371998		1276	atg/atGCAg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42852527	42852527	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs748560513		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	103	337	0	ENST00000398585.3:c.559C>T	p.Arg187Cys	p.R187C	ENST00000398585	NM_001135099.1	187	Cgc/Tgc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29383181	29383181	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	143	395	0	ENST00000544604.2:c.418C>A	p.Leu140Ile	p.L140I	ENST00000544604	NM_001206998.1	140	Cta/Ata																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445207	29445208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	137	361	0	ENST00000544604.2:c.1046_1047dup	p.Glu350TrpfsTer14	p.E350Wfs*14	ENST00000544604	NM_001206998.1	346	-/GT																																																																															
MLH1	4292	MSKCC	GRCh37	3	37055966	37055966	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	72	255	0	ENST00000231790.2:c.724del	p.Met242Ter	p.M242*	ENST00000231790	NM_000249.3	241	Aaa/aa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067243	37067243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs63750430		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	134	326	0	ENST00000231790.2:c.1154G>A	p.Arg385His	p.R385H	ENST00000231790	NM_000249.3	385	cGt/cAt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437697	52437697	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	132	468	0	ENST00000460680.1:c.1464del	p.Ser489AlafsTer82	p.S489Afs*82	ENST00000460680	NM_004656.3	488	ccC/cc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52613085	52613085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1318993618		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	132	361	0	ENST00000394830.3:c.3443G>A	p.Arg1148His	p.R1148H	ENST00000394830	NM_018313.4	1148	cGt/cAt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499363	89499363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1317589623		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	121	391	0	ENST00000336596.2:c.2538del	p.Met847TrpfsTer10	p.M847Wfs*10	ENST00000336596	NM_005233.5	845	Ccc/cc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541660	187541660	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745765579		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	138	399	0	ENST00000441802.2:c.6080G>A	p.Arg2027His	p.R2027H	ENST00000441802	NM_005245.3	2027	cGc/cAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187560874	187560874	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	38	295	0	ENST00000441802.2:c.3642+2T>C		p.X1214_splice	ENST00000441802	NM_005245.3	1214																																																																																
PHOX2B	8929	MSKCC	GRCh37	4	41748320	41748320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	101	309	0	ENST00000226382.2:c.449G>A	p.Arg150His	p.R150H	ENST00000226382	NM_003924.3	150	cGc/cAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180045800	180045800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1416698957		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	114	416	0	ENST00000261937.6:c.2971G>A	p.Gly991Arg	p.G991R	ENST00000261937	NM_182925.4	991	Gga/Aga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	108	433	3	ENST00000261937.6:c.89del	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	73	425	6	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591259	67591259	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	52	351	0	ENST00000274335.5:c.1761del	p.Gly588ValfsTer7	p.G588Vfs*7	ENST00000274335		586	cAa/ca																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	81	340	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405954	157405954	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	151	485	0	ENST00000346085.5:c.2201del	p.Gly734AlafsTer11	p.G734Afs*11	ENST00000346085	NM_020732.3	732	ccG/cc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288332	33288332	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772837276		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	139	405	0	ENST00000374542.5:c.1076G>A	p.Arg359Gln	p.R359Q	ENST00000374542	NM_001141970.1	359	cGg/cAg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508059	106508059	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142380460		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	125	330	0	ENST00000359195.3:c.53G>A	p.Arg18Gln	p.R18Q	ENST00000359195	NM_002649.2	18	cGa/cAa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508733	106508733	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1207051578		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	134	445	1	ENST00000359195.3:c.727G>A	p.Ala243Thr	p.A243T	ENST00000359195	NM_002649.2	243	Gcc/Acc																																																																															
MET	4233	MSKCC	GRCh37	7	116397808	116397808	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	83	359	0	ENST00000397752.3:c.2086del	p.Thr696HisfsTer4	p.T696Hfs*4	ENST00000397752	NM_000245.2	694	ggA/gg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874147	151874148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs771193709		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	96	418	6	ENST00000262189.6:c.8390dup	p.Glu2798GlyfsTer11	p.E2798Gfs*11	ENST00000262189	NM_170606.2	2797	aag/aaAg																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346220	152346220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	121	414	3	ENST00000359321.1:c.350del	p.Leu117TrpfsTer17	p.L117Wfs*17	ENST00000359321	NM_005431.1	117	tTg/tg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2952993	2952993	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369115970		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	109	330	0	ENST00000396946.4:c.2947G>A	p.Val983Met	p.V983M	ENST00000396946	NM_032415.4	983	Gtg/Atg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978405	2978405	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370704955		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	143	382	0	ENST00000396946.4:c.925C>T	p.Arg309Cys	p.R309C	ENST00000396946	NM_032415.4	309	Cgc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55227986	55227986	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769434273		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	106	326	0	ENST00000275493.2:c.1453G>A	p.Gly485Ser	p.G485S	ENST00000275493	NM_005228.3	485	Ggt/Agt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	108	522	6	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
ABL1	25	MSKCC	GRCh37	9	133729579	133729579	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	114	349	0	ENST00000318560.5:c.208T>C	p.Tyr70His	p.Y70H	ENST00000318560	NM_005157.4	70	Tat/Cat																																																																															
ABL1	25	MSKCC	GRCh37	9	133759481	133759481	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755568851		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	146	508	0	ENST00000318560.5:c.1804G>A	p.Ala602Thr	p.A602T	ENST00000318560	NM_005157.4	602	Gcc/Acc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300040	137300040	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	115	335	1	ENST00000481739.1:c.331del	p.Leu111TrpfsTer57	p.L111Wfs*57	ENST00000481739	NM_002957.4	109	Ccc/cc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5022007	5022007	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770579392		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	85	334	0	ENST00000381652.3:c.20C>T	p.Thr7Met	p.T7M	ENST00000381652	NM_004972.3	7	aCg/aTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	62	394	0	ENST00000331920.6:c.3921del	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98215821	98215821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766037357		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	120	299	0	ENST00000331920.6:c.3388G>A	p.Ala1130Thr	p.A1130T	ENST00000331920	NM_000264.3	1130	Gcc/Acc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44937722	44937722	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	43	111	0	ENST00000377967.4:c.2910A>G	p.Ile970Met	p.I970M	ENST00000377967	NM_021140.2	970	atA/atG																																																																															
ATRX	546	MSKCC	GRCh37	X	76920172	76920173	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	51	166	0	ENST00000373344.5:c.3904dup	p.Arg1302LysfsTer7	p.R1302Kfs*7	ENST00000373344	NM_000489.3	1302	aga/aAga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11307914	11307914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	42	444	0	ENST00000361445.4:c.1078C>T	p.Arg360Trp	p.R360W	ENST00000361445	NM_004958.3	360	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16264302	16264304	+	splice_region_variant,intron_variant	Splice_Region	DEL	AGC	AGC	-			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	120	381	0	ENST00000375759.3:c.10510-3_10510-1del		p.X3504_splice	ENST00000375759	NM_015001.2	3504																																																																																
CDC73	79577	MSKCC	GRCh37	1	193094264	193094265	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	35	319	0	ENST00000367435.3:c.158_159del	p.Glu53ValfsTer12	p.E53Vfs*12	ENST00000367435	NM_024529.4	52	AGa/a																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612623	228612623	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1277450211		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	40	409	0	ENST00000366696.1:c.404G>A	p.Arg135Gln	p.R135Q	ENST00000366696	NM_003493.2	135	cGg/cAg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118392110	118392110	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140845031		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	128	387	0	ENST00000534358.1:c.11621G>A	p.Arg3874Gln	p.R3874Q	ENST00000534358	NM_005933.3	3874	cGg/cAg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941408	71941408	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	160	444	0	ENST00000298229.2:c.1093C>A	p.Arg365Ser	p.R365S	ENST00000298229	NM_001567.3	365	Cgc/Agc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433592	49433592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	134	507	0	ENST00000301067.7:c.7961G>T	p.Ser2654Ile	p.S2654I	ENST00000301067	NM_003482.3	2654	aGc/aTc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562516	21562516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	61	203	0	ENST00000382592.4:c.1403C>T	p.Ala468Val	p.A468V	ENST00000382592	NM_014572.2	468	gCg/gTg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355847	73355847	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	103	293	0	ENST00000377767.4:c.124del	p.Ala42ArgfsTer47	p.A42Rfs*47	ENST00000377767	NM_014953.3	42	Gcg/cg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817722	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	A			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	124	357	0	ENST00000262367.5:c.3249_3250insT	p.Ile1084TyrfsTer3	p.I1084Yfs*3	ENST00000262367	NM_004380.2	1083	-/T																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991935	72991935	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	129	380	0	ENST00000268489.5:c.2110T>G	p.Cys704Gly	p.C704G	ENST00000268489	NM_006885.3	704	Tgc/Ggc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351865	89351865	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	151	467	0	ENST00000301030.4:c.1085A>G	p.Asp362Gly	p.D362G	ENST00000301030	NM_001256183.1	362	gAc/gGc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89833613	89833614	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	102	293	0	ENST00000389301.3:c.2535_2536dup	p.Cys846SerfsTer44	p.C846Sfs*44	ENST00000389301	NM_000135.2	846	tgc/tCTgc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41234454	41234454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	83	377	0	ENST00000357654.3:c.4324C>A	p.Leu1442Met	p.L1442M	ENST00000357654	NM_007294.3	1442	Ctg/Atg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437564	56437564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	148	399	0	ENST00000407977.2:c.898G>A	p.Asp300Asn	p.D300N	ENST00000407977		300	Gac/Aac																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554664	63554665	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	148	453	0	ENST00000307078.5:c.74dup	p.Val26SerfsTer115	p.V26Sfs*115	ENST00000307078	NM_004655.3	25	cca/ccCa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17941395	17941395	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	136	412	0	ENST00000458235.1:c.3013T>G	p.Ser1005Ala	p.S1005A	ENST00000458235	NM_000215.3	1005	Tct/Gct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213914	36213914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	68	397	2	ENST00000222270.7:c.2740G>A	p.Glu914Lys	p.E914K	ENST00000222270	NM_014727.1	914	Gag/Aag																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424802	47424802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	129	389	0	ENST00000404338.3:c.2870C>T	p.Ala957Val	p.A957V	ENST00000404338	NM_004491.4	957	gCt/gTt																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128051630	128051630	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	90	266	0	ENST00000285398.2:c.28G>A	p.Asp10Asn	p.D10N	ENST00000285398	NM_000122.1	10	Gac/Aac																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631957	67631957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	82	455	0	ENST00000272342.5:c.2143C>T	p.Pro715Ser	p.P715S	ENST00000272342	NM_019002.3	715	Cca/Tca																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024556	31024557	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	150	407	0	ENST00000375687.4:c.4045dup	p.Val1349GlyfsTer22	p.V1349Gfs*22	ENST00000375687	NM_015338.5	1347	-/G																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264455	46264455	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	109	401	0	ENST00000371998.3:c.1502C>T	p.Ala501Val	p.A501V	ENST00000371998		501	gCa/gTa																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326775	62326775	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	T			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	155	460	0	ENST00000482936.1:c.3594G>T	p.Glu1198Asp	p.E1198D	ENST00000482936		1198	gaG/gaT																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21342319	21342319	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	118	365	0	ENST00000215739.8:c.421T>C	p.Tyr141His	p.Y141H	ENST00000215739	NM_006767.3	141	Tat/Cat																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30733046	30733048	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-	rs752315892		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	117	376	0	ENST00000359013.4:c.1738_1740del	p.Glu580del	p.E580del	ENST00000359013	NM_001024847.2	578	tcGGAg/tcg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933468	49933468	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372578503		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	165	477	0	ENST00000296474.3:c.2722G>A	p.Glu908Lys	p.E908K	ENST00000296474	NM_002447.2	908	Gag/Aag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153259048	153259048	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	48	366	0	ENST00000281708.4:c.767T>G	p.Leu256Arg	p.L256R	ENST00000281708	NM_033632.3	256	cTc/cGc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1952896	1952896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	143	406	0	ENST00000382895.3:c.1979G>A	p.Arg660Gln	p.R660Q	ENST00000382895	NM_133330.2	660	cGa/cAa																																																																															
TERT	7015	MSKCC	GRCh37	5	1294909	1294909	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	99	279	0	ENST00000310581.5:c.196C>G	p.Pro66Ala	p.P66A	ENST00000310581	NM_198253.2	66	Ccc/Gcc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046303	180046303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	84	277	0	ENST00000261937.6:c.2711G>A	p.Gly904Asp	p.G904D	ENST00000261937	NM_182925.4	904	gGc/gAc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31466300	31466300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	104	288	0	ENST00000344624.3:c.2455G>A	p.Ala819Thr	p.A819T	ENST00000344624		819	Gca/Aca																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519602	137519602	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	64	393	0	ENST00000367739.4:c.1036A>G	p.Thr346Ala	p.T346A	ENST00000367739	NM_000416.2	346	Aca/Gca																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32171976	32171976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	154	382	0	ENST00000375023.3:c.3056G>A	p.Gly1019Asp	p.G1019D	ENST00000375023	NM_004557.3	1019	gGc/gAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859863	151859863	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	85	507	0	ENST00000262189.6:c.10799A>G	p.Glu3600Gly	p.E3600G	ENST00000262189	NM_170606.2	3600	gAa/gGa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945381	151945381	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	10	166	0	ENST00000262189.6:c.2138A>G	p.Glu713Gly	p.E713G	ENST00000262189	NM_170606.2	713	gAa/gGa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737639	145737639	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	154	570	0	ENST00000428558.2:c.3124del	p.Asp1042ThrfsTer2	p.D1042Tfs*2	ENST00000428558	NM_004260.3	1042	Gac/ac																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564131	139564131	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs117990760		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	101	334	0	ENST00000308874.7:c.271G>A	p.Gly91Ser	p.G91S	ENST00000308874		91	Ggc/Agc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2081996	2081996	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	86	316	0	ENST00000349721.2:c.2348+1G>A		p.X783_splice	ENST00000349721	NM_003070.3	783																																																																																
SMARCA2	6595	MSKCC	GRCh37	9	2191350	2191350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	136	437	0	ENST00000349721.2:c.4679G>A	p.Arg1560Gln	p.R1560Q	ENST00000349721	NM_003070.3	1560	cGa/cAa																																																																															
TEK	7010	MSKCC	GRCh37	9	27180282	27180282	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	138	347	0	ENST00000380036.4:c.946A>C	p.Ser316Arg	p.S316R	ENST00000380036	NM_000459.3	316	Agc/Cgc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069022	5069022	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	71	293	0	ENST00000381652.3:c.1327C>T	p.Arg443Ter	p.R443*	ENST00000381652	NM_004972.3	443	Cga/Tga																																																																															
SYK	6850	MSKCC	GRCh37	9	93657832	93657832	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139348511		P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	157	397	0	ENST00000375746.1:c.1858G>A	p.Ala620Thr	p.A620T	ENST00000375746	NM_001174167.1	620	Gca/Aca																																																																															
PHF6	84295	MSKCC	GRCh37	X	133551220	133551220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			43	86	127	0	ENST00000332070.3:c.856C>T	p.Pro286Ser	p.P286S	ENST00000332070	NM_032458.2	286	Cct/Tct																																																																															
AR	367	MSKCC	GRCh37	X	66942770	66942770	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0084386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			55	97	147	0	ENST00000374690.3:c.2551A>G	p.Thr851Ala	p.T851A	ENST00000374690	NM_000044.3	851	Aca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0084388-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	462	446	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
AR	367	MSKCC	GRCh37	X	66766357	66766371	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCGGC	GGCGGCGGCGGCGGC	-	rs768867084		P-0084388-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	27	100	0	ENST00000374690.3:c.1406_1420del	p.Gly469_Gly473del	p.G469_G473del	ENST00000374690	NM_000044.3	457	GGCGGCGGCGGCGGC/-																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0084388-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	485	407	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
BCL2	596	MSKCC	GRCh37	18	60985400	60985400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084388-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	89	489	0	ENST00000333681.4:c.500C>T	p.Ser167Leu	p.S167L	ENST00000333681		167	tCg/tTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7267416	7267416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084388-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	106	396	1	ENST00000302850.5:c.592G>A	p.Ala198Thr	p.A198T	ENST00000302850	NM_000208.2	198	Gcc/Acc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103528113	103528113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084388-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	111	393	1	ENST00000355739.4:c.3421G>A	p.Gly1141Arg	p.G1141R	ENST00000355739	NM_000123.3	1141	Gga/Aga																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747989	41747990	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCTGCCGCCGCTGCC			P-0084388-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	12	159	0	ENST00000226382.2:c.765_779dup	p.Ala256_Ala260dup	p.A256_A260dup	ENST00000226382	NM_003924.3	256	gct/gcGGCAGCGGCGGCAGCt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38064150	38064150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084388-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	444	428	3	ENST00000250448.2:c.28C>T	p.His10Tyr	p.H10Y	ENST00000250448	NM_004496.3	10	Cat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0084403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	139	503	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584605	48584606	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0084403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	142	455	0	ENST00000342988.3:c.779dup	p.Tyr260Ter	p.Y260*	ENST00000342988	NM_005359.5	260	tac/tAac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0084403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	73	262	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672969	30672969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			829	108	561	1	ENST00000376406.3:c.3991G>A	p.Glu1331Lys	p.E1331K	ENST00000376406	NM_014641.2	1331	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0084404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			17	12	392	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0084404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			15	13	303	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519841		P-0084404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			17	15	359	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249077	55249077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0084404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			17	13	389	0	ENST00000275493.2:c.2375T>A	p.Leu792His	p.L792H	ENST00000275493	NM_005228.3	792	cTc/cAc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193121527	193121527	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0084404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			4	26	325	0	ENST00000367435.3:c.925A>T	p.Ile309Phe	p.I309F	ENST00000367435	NM_024529.4	309	Att/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0084414-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	124	367	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0084414-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	144	255	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120318	94120318	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41273629		P-0084414-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	30	430	0	ENST00000369303.4:c.733G>A	p.Ala245Thr	p.A245T	ENST00000369303	NM_004440.3	245	Gcc/Acc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166769	32166769	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs527962523		P-0084414-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	63	415	0	ENST00000375023.3:c.4469G>A	p.Arg1490Gln	p.R1490Q	ENST00000375023	NM_004557.3	1490	cGg/cAg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528647	89528647	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs536144760		P-0084414-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	29	283	1	ENST00000336596.2:c.2947G>A	p.Val983Met	p.V983M	ENST00000336596	NM_005233.5	983	Gtg/Atg																																																																															
MED12	9968	MSKCC	GRCh37	X	70356228	70356230	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0084414-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	94	394	0	ENST00000374080.3:c.5123_5125del	p.Val1708_Arg1709delinsGly	p.V1708_R1709delinsG	ENST00000374080		1708	gTCCga/gga																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291496	10291496	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0084414-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	107	339	0	ENST00000340748.4:c.183A>C	p.Leu61Phe	p.L61F	ENST00000340748		61	ttA/ttC																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249879	110249879	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0084414-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	24	363	0	ENST00000374672.4:c.796T>C	p.Tyr266His	p.Y266H	ENST00000374672	NM_004235.4	266	Tac/Cac																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26029175	26029201	+	inframe_deletion	In_Frame_Del	DEL	TTGCATTCAGGCATGCAAGAGGAGAAG	TTGCATTCAGGCATGCAAGAGGAGAAG	-			P-0084414-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	82	331	0	ENST00000435504.4:c.149_175del	p.Thr50_Ala58del	p.T50_A58del	ENST00000435504		50	aCTTCTCCTCTTGCATGCCTGAATGCAAtg/atg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266083	41266097	+	inframe_deletion	In_Frame_Del	DEL	AACAGTCTTACCTGG	AACAGTCTTACCTGG	-			P-0084414-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	33	387	0	ENST00000349496.5:c.81_95del	p.Gln27_Asp32delinsHis	p.Q27_D32delinsH	ENST00000349496	NM_001904.3	27	cAACAGTCTTACCTGGac/cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577152	7577154	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ACC	ACC	-			P-0084433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	173	402	0	ENST00000269305.4:c.784_786del	p.Gly262del	p.G262del	ENST00000269305	NM_001126112.2	262	GGT/-																																																																															
APC	324	MSKCC	GRCh37	5	112173747	112173748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0084433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	191	427	0	ENST00000257430.4:c.2457dup	p.Thr820AspfsTer24	p.T820Dfs*24	ENST00000257430	NM_000038.5	819	atg/atGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0084433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	133	327	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398315	25398315	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	157	264	0	ENST00000256078.4:c.4A>G	p.Thr2Ala	p.T2A	ENST00000256078	NM_033360.2	2	Act/Gct																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980599	1980599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	65	480	0	ENST00000382895.3:c.4061G>A	p.Arg1354Gln	p.R1354Q	ENST00000382895	NM_133330.2	1354	cGg/cAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401085	139401085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768775024		P-0084433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	65	515	0	ENST00000277541.6:c.3908G>A	p.Arg1303His	p.R1303H	ENST00000277541	NM_017617.3	1303	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0084435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	124	361	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175481	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0084435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	165	432	0	ENST00000257430.4:c.4190del	p.Glu1397GlyfsTer18	p.E1397Gfs*18	ENST00000257430	NM_000038.5	1397	gAg/gg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120003	70120003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0084435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	174	314	0	ENST00000245479.2:c.1005G>A	p.Trp335Ter	p.W335*	ENST00000245479	NM_000346.3	335	tgG/tgA																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984672	11984672	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0084435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	103	309	0	ENST00000353533.5:c.219-1G>C		p.X73_splice	ENST00000353533	NM_003010.3	73																																																																																
SPEN	23013	MSKCC	GRCh37	1	16202927	16202927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	83	506	0	ENST00000375759.3:c.635C>T	p.Pro212Leu	p.P212L	ENST00000375759	NM_015001.2	212	cCc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112162858	112162861	+	frameshift_variant	Frame_Shift_Del	DEL	CTTA	CTTA	-			P-0084435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	87	332	0	ENST00000257430.4:c.1464_1467del	p.Thr489MetfsTer8	p.T489Mfs*8	ENST00000257430	NM_000038.5	488	CTTAct/ct																																																																															
MTOR	2475	MSKCC	GRCh37	1	11300431	11300431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	172	417	0	ENST00000361445.4:c.1715C>T	p.Thr572Ile	p.T572I	ENST00000361445	NM_004958.3	572	aCc/aTc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120502047	120502047	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs189684879		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	157	293	0	ENST00000256646.2:c.1994G>A	p.Arg665His	p.R665H	ENST00000256646	NM_024408.3	665	cGc/cAc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589545	69589545	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1331436166		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	184	603	2	ENST00000168712.1:c.308G>A	p.Arg103His	p.R103H	ENST00000168712	NM_002007.2	103	cGc/cAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941304	71941304	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372182741		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	199	553	0	ENST00000298229.2:c.1079C>T	p.Thr360Met	p.T360M	ENST00000298229	NM_001567.3	360	aCg/aTg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94201032	94201032	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs570102851		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	183	274	0	ENST00000323929.3:c.1045C>T	p.Arg349Trp	p.R349W	ENST00000323929	NM_005591.3	349	Cgg/Tgg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	186	380	1	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988364	36988364	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762924398		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	115	345	2	ENST00000354822.5:c.289G>A	p.Ala97Thr	p.A97T	ENST00000354822	NM_001079668.2	97	Gcc/Acc																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	249	399	0	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs794727798		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	169	362	0	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89845230	89845230	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374968669		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	38	346	0	ENST00000389301.3:c.1805C>T	p.Ala602Val	p.A602V	ENST00000389301	NM_000135.2	602	gCg/gTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857075	9857075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	153	336	0	ENST00000330684.3:c.4326del	p.Arg1443GlyfsTer3	p.R1443Gfs*3	ENST00000330684	NM_001134407.1	1442	ccC/cc																																																																															
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	158	379	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																															
MSI2	124540	MSKCC	GRCh37	17	55752364	55752364	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	135	333	0	ENST00000284073.2:c.826del	p.Ala276ProfsTer24	p.A276Pfs*24	ENST00000284073	NM_138962.2	274	ccG/cc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	224	573	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440643	56440643	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	212	461	0	ENST00000407977.2:c.575del	p.Pro192ArgfsTer11	p.P192Rfs*11	ENST00000407977		192	cCg/cg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	188	503	0	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119909	70119910	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	117	346	0	ENST00000245479.2:c.916dup	p.Val306GlyfsTer272	p.V306Gfs*272	ENST00000245479	NM_000346.3	304	ccg/ccGg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10246943	10246943	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749413587		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	105	413	0	ENST00000340748.4:c.4462G>A	p.Ala1488Thr	p.A1488T	ENST00000340748		1488	Gca/Aca																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278091	18278091	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1165324884		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	45	361	0	ENST00000222254.8:c.1711C>T	p.Arg571Cys	p.R571C	ENST00000222254	NM_005027.3	571	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214899	36214899	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	145	397	0	ENST00000222270.7:c.3325C>T	p.Arg1109Ter	p.R1109*	ENST00000222270	NM_014727.1	1109	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	51	137	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	34	488	1	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	117	454	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279756	29279756	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			61	35	78	0	ENST00000544604.2:c.2T>C	p.Met1?	p.M1?	ENST00000544604	NM_001206998.1	1	aTg/aCg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445999	29445999	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	132	399	3	ENST00000544604.2:c.1835del	p.Gly612AlafsTer54	p.G612Afs*54	ENST00000544604	NM_001206998.1	610	gcG/gc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873058	134873058	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	161	333	0	ENST00000398015.3:c.1362G>C	p.Trp454Cys	p.W454C	ENST00000398015	NM_004441.4	454	tgG/tgC																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146703	185146703	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	213	377	0	ENST00000265026.3:c.334G>T	p.Gly112Ter	p.G112*	ENST00000265026	NM_004721.4	112	Gga/Tga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	392	368	13	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
MITF	4286	MSKCC	GRCh37	3	69987147	69987147	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760770591		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	196	425	0	ENST00000352241.4:c.529G>A	p.Ala177Thr	p.A177T	ENST00000352241	NM_198159.2	177	Gca/Aca																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515151	149515151	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs558122968		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	234	396	0	ENST00000261799.4:c.331G>A	p.Asp111Asn	p.D111N	ENST00000261799	NM_002609.3	111	Gat/Aat																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589576	67589576	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1289537429		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	30	302	0	ENST00000274335.5:c.1344del	p.Lys448AsnfsTer32	p.K448Nfs*32	ENST00000274335		447	Aaa/aa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117678076	117678076	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs373090808		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	156	274	0	ENST00000368508.3:c.3857G>A	p.Arg1286His	p.R1286H	ENST00000368508	NM_002944.2	1286	cGc/cAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	152	313	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	154	321	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467828	50467828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1040607869		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	121	443	0	ENST00000331340.3:c.1063G>A	p.Ala355Thr	p.A355T	ENST00000331340	NM_006060.4	355	Gcg/Acg																																																																															
RAC1	5879	MSKCC	GRCh37	7	6431665	6431665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	161	247	0	ENST00000356142.4:c.218C>T	p.Pro73Leu	p.P73L	ENST00000356142	NM_018890.3	73	cCg/cTg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1019	160	340	2	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141557661	141557661	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759579021		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1087	192	418	0	ENST00000220592.5:c.1654G>A	p.Val552Met	p.V552M	ENST00000220592	NM_012154.3	552	Gtg/Atg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738482	145738482	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373187237		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			931	135	512	0	ENST00000428558.2:c.2503G>A	p.Asp835Asn	p.D835N	ENST00000428558	NM_004260.3	835	Gac/Aac																																																																															
LYN	4067	MSKCC	GRCh37	8	56922484	56922484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	218	387	0	ENST00000519728.1:c.1354G>A	p.Val452Met	p.V452M	ENST00000519728	NM_002350.3	452	Gtg/Atg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112942560	112942560	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	30	254	0	ENST00000351677.2:c.1774T>C	p.Phe592Leu	p.F592L	ENST00000351677	NM_002834.3	592	Ttc/Ctc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15964942	15964944	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	189	403	0	ENST00000268712.3:c.5652_5654del	p.Ser1885del	p.S1885del	ENST00000268712	NM_006311.3	1884	tcTTCa/tca																																																																															
NF1	4763	MSKCC	GRCh37	17	29556310	29556310	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	216	412	0	ENST00000358273.4:c.2677A>C	p.Lys893Gln	p.K893Q	ENST00000358273	NM_001042492.2	893	Aaa/Caa																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61310396	61310396	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	58	143	0	ENST00000341074.5:c.221A>G	p.His74Arg	p.H74R	ENST00000341074	NM_002974.2	74	cAt/cGt																																																																															
GNA11	2767	MSKCC	GRCh37	19	3121011	3121011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	190	449	1	ENST00000078429.4:c.914C>T	p.Ala305Val	p.A305V	ENST00000078429	NM_002067.2	305	gCg/gTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134514488	134514488	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	76	228	0	ENST00000398015.3:c.15T>A	p.Tyr5Ter	p.Y5*	ENST00000398015	NM_004441.4	5	taT/taA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230777	66230777	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	178	357	0	ENST00000273854.3:c.2194G>T	p.Asp732Tyr	p.D732Y	ENST00000273854	NM_004439.5	732	Gat/Tat																																																																															
BRAF	673	MSKCC	GRCh37	7	140482915	140482915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	269	484	0	ENST00000288602.6:c.1220C>A	p.Pro407His	p.P407H	ENST00000288602	NM_004333.4	407	cCt/cAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391145	139391145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	157	528	0	ENST00000277541.6:c.7046C>A	p.Pro2349Gln	p.P2349Q	ENST00000277541	NM_017617.3	2349	cCg/cAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401207	139401207	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752264096		P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	161	511	0	ENST00000277541.6:c.3862G>A	p.Val1288Ile	p.V1288I	ENST00000277541	NM_017617.3	1288	Gtc/Atc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932209	39932210	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0084439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	225	201	0	ENST00000378444.4:c.2389_2390del	p.Val797CysfsTer19	p.V797Cfs*19	ENST00000378444	NM_001123385.1	797	GTt/t																																																																															
ALK	238	MSKCC	GRCh37	2	29443679	29443679	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	46	477	0	ENST00000389048.3:c.3538G>C	p.Val1180Leu	p.V1180L	ENST00000389048	NM_004304.4	1180	Gtt/Ctt																																																																															
NF1	4763	MSKCC	GRCh37	17	29554310	29554310	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0084458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	31	409	0	ENST00000358273.4:c.2325+1G>A		p.X775_splice	ENST00000358273	NM_001042492.2	775																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44935959	44935959	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	69	308	0	ENST00000377967.4:c.2720G>C	p.Gly907Ala	p.G907A	ENST00000377967	NM_021140.2	907	gGc/gCc																																																																															
AKT2	208	MSKCC	GRCh37	19	40762959	40762959	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs387906659		P-0084463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	504	480	0	ENST00000392038.2:c.49G>A	p.Glu17Lys	p.E17K	ENST00000392038	NM_001626.4	17	Gaa/Aaa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858313	9858313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			781	243	490	0	ENST00000330684.3:c.3088C>T	p.Pro1030Ser	p.P1030S	ENST00000330684	NM_001134407.1	1030	Cca/Tca																																																																															
CDH1	999	MSKCC	GRCh37	16	68849493	68849493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	238	476	0	ENST00000261769.5:c.1396C>T	p.Leu466Phe	p.L466F	ENST00000261769	NM_004360.3	466	Ctc/Ttc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858050	9858050	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1462511588		P-0084463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			758	203	528	0	ENST00000330684.3:c.3351C>G	p.Ile1117Met	p.I1117M	ENST00000330684	NM_001134407.1	1117	atC/atG																																																																															
MGA	23269	MSKCC	GRCh37	15	42054538	42054539	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGAAAAAAAGACCAGGCCA			P-0084463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	131	308	0	ENST00000219905.7:c.7723_7741dup	p.Thr2581LysfsTer48	p.T2581Kfs*48	ENST00000219905	NM_001164273.1	2574	-/AGAAAAAAAGACCAGGCCA																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45854937	45854937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	37	377	0	ENST00000391945.4:c.2233G>A	p.Glu745Lys	p.E745K	ENST00000391945	NM_000400.3	745	Gaa/Aaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873352	151873354	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0084463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	252	463	0	ENST00000262189.6:c.9184_9186del	p.Glu3062del	p.E3062del	ENST00000262189	NM_170606.2	3062	GAA/-																																																																															
MTOR	2475	MSKCC	GRCh37	1	11182177	11182177	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	206	414	0	ENST00000361445.4:c.6669G>C	p.Gln2223His	p.Q2223H	ENST00000361445	NM_004958.3	2223	caG/caC																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321312	1321312	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0084463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	227	448	0	ENST00000381566.1:c.443A>T	p.Tyr148Phe	p.Y148F	ENST00000381566		148	tAt/tTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034440	47034440	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	21	345	0	ENST00000329236.7:c.294C>A	p.Phe98Leu	p.F98L	ENST00000329236	NM_001204466.1	98	ttC/ttA																																																																															
CDH1	999	MSKCC	GRCh37	16	68844201	68844202	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGGAGGTCTTTAAGGGGTCTGT			P-0084463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	136	425	0	ENST00000261769.5:c.792_814dup	p.Met272ArgfsTer18	p.M272Rfs*18	ENST00000261769	NM_004360.3	263	-/CAGGAGGTCTTTAAGGGGTCTGT																																																																															
TEK	7010	MSKCC	GRCh37	9	27197324	27197324	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	136	340	0	ENST00000380036.4:c.1636C>G	p.Pro546Ala	p.P546A	ENST00000380036	NM_000459.3	546	Cca/Gca																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252890	36252891	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0084464-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	193	457	0	ENST00000300305.3:c.471dup	p.Phe158IlefsTer2	p.F158Ifs*2	ENST00000300305		157	-/A																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0012792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	1424	415	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265352	152265352	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142712646		P-0012792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	78	487	0	ENST00000206249.3:c.805C>T	p.Arg269Cys	p.R269C	ENST00000206249	NM_000125.3	269	Cgc/Tgc																																																																															
RHOA	387	MSKCC	GRCh37	3	49405962	49405962	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			376	95	430	0	ENST00000418115.1:c.176A>G	p.Asp59Gly	p.D59G	ENST00000418115	NM_001664.2	59	gAc/gGc																																																																															
CDH1	999	MSKCC	GRCh37	16	68867377	68867377	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs900118000		P-0012792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			521	62	460	0	ENST00000261769.5:c.2624T>G	p.Met875Arg	p.M875R	ENST00000261769	NM_004360.3	875	aTg/aGg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38942410	38942410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	43	307	0	ENST00000357387.3:c.5123C>T	p.Ser1708Phe	p.S1708F	ENST00000357387	NM_152756.3	1708	tCc/tTc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610616	52610616	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			378	74	442	0	ENST00000394830.3:c.3557A>G	p.Tyr1186Cys	p.Y1186C	ENST00000394830	NM_018313.4	1186	tAc/tGc																																																																															
BTK	695	MSKCC	GRCh37	X	100612571	100612571	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1057517710		P-0012792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			365	77	414	0	ENST00000308731.7:c.1103G>A	p.Gly368Glu	p.G368E	ENST00000308731	NM_000061.2	368	gGa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0078855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	88	534	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933472	39933473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	62	280	0	ENST00000378444.4:c.1126dup	p.Tyr376LeufsTer5	p.Y376Lfs*5	ENST00000378444	NM_001123385.1	376	tac/tTac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	67	513	0	ENST00000269305.4:c.799C>G	p.Arg267Gly	p.R267G	ENST00000269305	NM_001126112.2	267	Cgg/Ggg																																																																															
ATM	472	MSKCC	GRCh37	11	108127032	108127032	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0082613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	81	378	0	ENST00000278616.4:c.2215G>T	p.Glu739Ter	p.E739*	ENST00000278616	NM_000051.3	739	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0084204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			69	91	260	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0084204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	8	514	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
ATM	472	MSKCC	GRCh37	11	108216546	108216546	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs529296539		P-0084204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	8	420	0	ENST00000278616.4:c.8495G>A	p.Arg2832His	p.R2832H	ENST00000278616	NM_000051.3	2832	cGt/cAt																																																																															
EP300	2033	MSKCC	GRCh37	22	41568582	41568582	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs763860567		P-0084204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	90	484	0	ENST00000263253.7:c.4532A>G	p.Asn1511Ser	p.N1511S	ENST00000263253	NM_001429.3	1511	aAt/aGt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79968102	79968102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	44	440	0	ENST00000265081.6:c.832C>T	p.His278Tyr	p.H278Y	ENST00000265081	NM_002439.4	278	Cac/Tac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653862	89653863	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0084204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	28	320	0	ENST00000371953.3:c.161_162dup	p.Arg55Ter	p.R55*	ENST00000371953	NM_000314.4	54	gta/gTAta																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0084222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	158	445	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0084222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	39	298	2	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748583	40748583	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1444440253		P-0084222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	112	338	0	ENST00000373198.4:c.2933C>T	p.Ala978Val	p.A978V	ENST00000373198	NM_133170.3	978	gCg/gTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591925	48591925	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660556		P-0084222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	171	585	0	ENST00000342988.3:c.1088G>A	p.Cys363Tyr	p.C363Y	ENST00000342988	NM_005359.5	363	tGt/tAt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98238339	98238339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753240797		P-0084222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	53	556	0	ENST00000331920.6:c.1705G>A	p.Ala569Thr	p.A569T	ENST00000331920	NM_000264.3	569	Gct/Act																																																																															
POLE	5426	MSKCC	GRCh37	12	133226031	133226031	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781298285		P-0084222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	140	605	0	ENST00000320574.5:c.3866G>A	p.Arg1289His	p.R1289H	ENST00000320574	NM_006231.2	1289	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577087	7577090	+	frameshift_variant	Frame_Shift_Del	DEL	GTGC	GTGC	-			P-0084222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	163	625	0	ENST00000269305.4:c.848_851del	p.Arg283GlnfsTer61	p.R283Qfs*61	ENST00000269305	NM_001126112.2	283	cGCACa/ca																																																																															
REST	5978	MSKCC	GRCh37	4	57797911	57797911	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0084222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	178	528	0	ENST00000309042.7:c.2887A>T	p.Asn963Tyr	p.N963Y	ENST00000309042	NM_005612.4	963	Aat/Tat																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343387	118343387	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0084222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	177	566	0	ENST00000534358.1:c.1513del	p.Asp505IlefsTer62	p.D505Ifs*62	ENST00000534358	NM_005933.3	505	Gat/at																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38145701	38146179	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAAAAGAAAATAAAAATAAAACAATAAAAAAAACAAGTAAAAACCATTTCACATAGAAATTACCAGTGTCCCCTCTCTCCTTTTTATGACTAGCCACTGGACACTCAAAGTTTAAGCACATTTTATCACTATCTTCTTCCTACTACTCTTCTTTGCTCAAGAAGTACCAAACTCTCAACATGGAAAGTTTTAACATTTTACCACAAATTCCTGCTGATTTTATCCCTAGAACTATACCCTACTGAAGCATTCCTGAAAAGCCAGGTTCTGGTCTCTTCCACCCCCCACCACCATCCCATGCTACCTTCTTAATGCTCCTTTTGGTCCTGAGGCCCCAGCCTCTCCGCTCCGTTTTGATGATCTCTGCATCAGGGTATAGTCTCTTTGTAAAGCACTGGTTCTGACAACGATCTCCAGCTGGGCACACCTGCGGGTGGCATTCATACTGCAACATTCTGTTCAGGCACTCCGATTCCAAG	TAAAAGAAAATAAAAATAAAACAATAAAAAAAACAAGTAAAAACCATTTCACATAGAAATTACCAGTGTCCCCTCTCTCCTTTTTATGACTAGCCACTGGACACTCAAAGTTTAAGCACATTTTATCACTATCTTCTTCCTACTACTCTTCTTTGCTCAAGAAGTACCAAACTCTCAACATGGAAAGTTTTAACATTTTACCACAAATTCCTGCTGATTTTATCCCTAGAACTATACCCTACTGAAGCATTCCTGAAAAGCCAGGTTCTGGTCTCTTCCACCCCCCACCACCATCCCATGCTACCTTCTTAATGCTCCTTTTGGTCCTGAGGCCCCAGCCTCTCCGCTCCGTTTTGATGATCTCTGCATCAGGGTATAGTCTCTTTGTAAAGCACTGGTTCTGACAACGATCTCCAGCTGGGCACACCTGCGGGTGGCATTCATACTGCAACATTCTGTTCAGGCACTCCGATTCCAAG	-			P-0084222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			6	113	23	0	ENST00000317025.8:c.3327_3501+304del		p.X1109_splice	ENST00000317025	NM_023034.1	1109																																																																																
NF1	4763	MSKCC	GRCh37	17	29670115	29670115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	54	416	0	ENST00000358273.4:c.7151C>T	p.Ser2384Phe	p.S2384F	ENST00000358273	NM_001042492.2	2384	tCt/tTt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998922	11998923	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0084222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	83	410	0	ENST00000353533.5:c.429dup	p.Gln144ThrfsTer13	p.Q144Tfs*13	ENST00000353533	NM_003010.3	142	caa/cAaa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193218932	193218933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0084254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	37	452	0	ENST00000367435.3:c.1491dup	p.Glu498ArgfsTer11	p.E498Rfs*11	ENST00000367435	NM_024529.4	497	tta/ttAa																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0084255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	157	466	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0084255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			834	180	594	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81929432	81929432	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775728338		P-0084255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			753	211	453	0	ENST00000359376.3:c.1093G>A	p.Asp365Asn	p.D365N	ENST00000359376	NM_002661.3	365	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0084255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	294	426	0	ENST00000269305.4:c.783-1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0084255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	100	287	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295674	1295674	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0084255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			773	224	584	0				ENST00000310581	NM_198253.2																																																																																	
BCOR	54880	MSKCC	GRCh37	X	39932663	39932664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGCC			P-0084255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	255	352	0	ENST00000378444.4:c.1932_1935dup	p.Phe646GlyfsTer20	p.F646Gfs*20	ENST00000378444	NM_001123385.1	645	-/GGCA																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481882	56481882	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			877	244	486	0	ENST00000267101.3:c.810C>A	p.Phe270Leu	p.F270L	ENST00000267101	NM_001982.3	270	ttC/ttA																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911535	101911536	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0084255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	190	387	0	ENST00000374994.4:c.1460_1461delinsTT	p.Arg487Leu	p.R487L	ENST00000374994	NM_004612.2	487	cGG/cTT																																																																															
APC	324	MSKCC	GRCh37	5	112174053	112174054	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACTTAGAAGAAGCTCTGCT			P-0084255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	93	530	0	ENST00000257430.4:c.2763_2781dup	p.Ala928ThrfsTer2	p.A928Tfs*2	ENST00000257430	NM_000038.5	921	gca/gcACTTAGAAGAAGCTCTGCTa																																																																															
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs864622007		P-0084256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	103	286	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123505233	123505233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	146	363	0	ENST00000371139.4:c.379G>A	p.Ala127Thr	p.A127T	ENST00000371139	NM_001114937.2	127	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578483	7578483	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0084258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	213	621	0	ENST00000269305.4:c.447del	p.Thr150HisfsTer20	p.T150Hfs*20	ENST00000269305	NM_001126112.2	149	tcC/tc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115852	8115853	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-	rs1085307641		P-0084258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	130	626	0	ENST00000346208.3:c.1198_1199del	p.Met400ValfsTer106	p.M400Vfs*106	ENST00000346208		400	ATg/g																																																																															
CTR9	9646	MSKCC	GRCh37	11	10785395	10785395	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746306809		P-0084258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	176	514	0	ENST00000361367.2:c.1163C>T	p.Ser388Leu	p.S388L	ENST00000361367	NM_014633.3	388	tCa/tTa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347641	89347641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	184	662	0	ENST00000301030.4:c.5309G>A	p.Gly1770Glu	p.G1770E	ENST00000301030	NM_001256183.1	1770	gGg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750600586		P-0084314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	110	418	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354350	354350	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764120241		P-0084314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	60	298	0	ENST00000262320.3:c.1208G>A	p.Arg403Gln	p.R403Q	ENST00000262320	NM_003502.3	403	cGg/cAg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11924264	11924264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	46	373	0	ENST00000353533.5:c.61C>T	p.Pro21Ser	p.P21S	ENST00000353533	NM_003010.3	21	Ccc/Tcc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664918	138664918	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs565208053		P-0084314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	45	207	0	ENST00000330315.3:c.647C>T	p.Ala216Val	p.A216V	ENST00000330315	NM_023067.3	216	gCc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0084314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	49	313	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584578	48584578	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0084314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	54	464	0	ENST00000342988.3:c.752del	p.Asn251MetfsTer85	p.N251Mfs*85	ENST00000342988	NM_005359.5	251	Aat/at																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0084365-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	72	323	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197867	123197867	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0084365-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	49	277	0	ENST00000218089.9:c.1991A>C	p.Lys664Thr	p.K664T	ENST00000218089	NM_001042749.1	664	aAa/aCa																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798302	45798302	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084365-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	62	575	0	ENST00000372115.3:c.592C>G	p.Leu198Val	p.L198V	ENST00000372115	NM_001048171.1	198	Ctg/Gtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259439	55259439	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs397517126		P-0084367-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	164	343	0	ENST00000275493.2:c.2497T>G	p.Leu833Val	p.L833V	ENST00000275493	NM_005228.3	833	Ttg/Gtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0084367-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	167	374	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
MED12	9968	MSKCC	GRCh37	X	70356220	70356222	+	inframe_deletion	In_Frame_Del	DEL	TGG	TGG	-			P-0084367-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	65	228	0	ENST00000374080.3:c.5115_5117del	p.Phe1705_Gly1706delinsLeu	p.F1705_G1706delinsL	ENST00000374080		1705	ttTGGa/tta																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374882	45374882	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084367-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	75	350	0	ENST00000262160.6:c.961C>G	p.Arg321Gly	p.R321G	ENST00000262160	NM_005901.5	321	Cga/Gga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0084368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	307	355	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788605	3788605	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	296	319	0	ENST00000262367.5:c.4349A>G	p.Tyr1450Cys	p.Y1450C	ENST00000262367	NM_004380.2	1450	tAc/tGc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39262448	39262448	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs758546951		P-0084368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	236	327	0	ENST00000402219.2:c.979A>G	p.Ile327Val	p.I327V	ENST00000402219	NM_005633.3	327	Ata/Gta																																																																															
ATM	472	MSKCC	GRCh37	11	108178707	108178707	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0084368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			920	69	317	0	ENST00000278616.4:c.5758A>C	p.Lys1920Gln	p.K1920Q	ENST00000278616	NM_000051.3	1920	Aag/Cag																																																																															
NF2	4771	MSKCC	GRCh37	22	30069351	30069351	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0084368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	466	427	0	ENST00000338641.4:c.1216G>T	p.Glu406Ter	p.E406*	ENST00000338641	NM_000268.3	406	Gag/Tag																																																																															
PMS1	5378	MSKCC	GRCh37	2	190682829	190682829	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0084368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	243	299	0	ENST00000441310.2:c.505A>T	p.Ile169Leu	p.I169L	ENST00000441310	NM_000534.4	169	Ata/Tta																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945036	151945036	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	21	177	0	ENST00000262189.6:c.2483C>G	p.Pro828Arg	p.P828R	ENST00000262189	NM_170606.2	828	cCa/cGa																																																																															
SDHA	6389	MSKCC	GRCh37	5	236591	236591	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	82	102	0	ENST00000264932.6:c.1309G>T	p.Ala437Ser	p.A437S	ENST00000264932	NM_004168.2	437	Gcc/Tcc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400927	72400927	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	272	357	0	ENST00000357731.5:c.244G>T	p.Gly82Cys	p.G82C	ENST00000357731	NM_173808.2	82	Ggt/Tgt																																																																															
BTK	695	MSKCC	GRCh37	X	100613257	100613384	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGTGTCTGTAACTCCCTTCTCAGTTGCCCCTGGTACTCACCTGCAGAGTTGTGCTGATGGTAGTTAATGAGCTCAGGGATGGTGCTGAAAAGGTGCTTCTCAGCCAGGTAATACTGGCTCTGAGGTG	TGGTGTCTGTAACTCCCTTCTCAGTTGCCCCTGGTACTCACCTGCAGAGTTGTGCTGATGGTAGTTAATGAGCTCAGGGATGGTGCTGAAAAGGTGCTTCTCAGCCAGGTAATACTGGCTCTGAGGTG	-			P-0084368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	73	295	0	ENST00000308731.7:c.1016_1102+41del		p.X339_splice	ENST00000308731	NM_000061.2	339																																																																																
GSK3B	2932	MSKCC	GRCh37	3	119582355	119582355	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			936	348	385	0	ENST00000316626.5:c.1046C>A	p.Ala349Glu	p.A349E	ENST00000316626		349	gCa/gAa																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63968614	63968614	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0084368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	32	267	0	ENST00000295900.6:c.1013-1G>A		p.X338_splice	ENST00000295900	NM_000333.3	338																																																																																
CSDE1	7812	MSKCC	GRCh37	1	115261240	115261240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	238	349	0	ENST00000438362.2:c.2481C>A	p.Asn827Lys	p.N827K	ENST00000438362	NM_001242891.1	827	aaC/aaA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927439	178927439	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	193	284	0	ENST00000263967.3:c.1202G>C	p.Arg401Pro	p.R401P	ENST00000263967	NM_006218.2	401	cGa/cCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510174	187510174	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0084368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	330	447	0	ENST00000441802.2:c.13339G>T	p.Glu4447Ter	p.E4447*	ENST00000441802	NM_005245.3	4447	Gag/Tag																																																																															
POT1	25913	MSKCC	GRCh37	7	124532354	124532354	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			63	216	279	0	ENST00000357628.3:c.90G>T	p.Lys30Asn	p.K30N	ENST00000357628	NM_015450.2	30	aaG/aaT																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839790	27839790	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	903	550	0	ENST00000328488.2:c.304G>T	p.Val102Leu	p.V102L	ENST00000328488	NM_003533.2	102	Gtg/Ttg																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800875	120800875	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	278	406	0	ENST00000257552.2:c.373G>T	p.Val125Leu	p.V125L	ENST00000257552	NM_002442.3	125	Gtg/Ttg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289669	33289669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0084368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	509	384	0	ENST00000374542.5:c.34G>T	p.Asp12Tyr	p.D12Y	ENST00000374542	NM_001141970.1	12	Gat/Tat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0084380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	165	427	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0084380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	420	402	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0084380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	87	178	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259861	16259861	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0084380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	225	532	0	ENST00000375759.3:c.7126C>T	p.Gln2376Ter	p.Q2376*	ENST00000375759	NM_015001.2	2376	Cag/Tag																																																																															
CDH1	999	MSKCC	GRCh37	16	68867311	68867314	+	frameshift_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0084380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	228	482	0	ENST00000261769.5:c.2560_2563del	p.Asp854LysfsTer8	p.D854Kfs*8	ENST00000261769	NM_004360.3	853	tCAGAc/tc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467206	99467206	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	182	303	0	ENST00000268035.6:c.2587C>G	p.Leu863Val	p.L863V	ENST00000268035	NM_000875.3	863	Cta/Gta																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577204	64577204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0084380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	200	439	0	ENST00000337652.1:c.378G>A	p.Trp126Ter	p.W126*	ENST00000337652	NM_130803.2	126	tgG/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0084381-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	178	209	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47502598	47502599	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	CT			P-0084381-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	105	280	0	ENST00000404338.3:c.4074_4075delinsCT	p.Lys1358_Glu1359delinsAsnTer	p.K1358_E1359delinsN*	ENST00000404338	NM_004491.4	1358	aaGGag/aaCTag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657693	37657693	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0084381-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	491	300	0	ENST00000447079.4:c.2609+1G>C		p.X870_splice	ENST00000447079	NM_015083.1	870																																																																																
SMO	6608	MSKCC	GRCh37	7	128845590	128845590	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772693769		P-0068903-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			419	34	342	0	ENST00000249373.3:c.887G>A	p.Arg296His	p.R296H	ENST00000249373	NM_005631.4	296	cGt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0068903-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			413	89	239	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023054	150023054	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068903-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			519	50	330	0	ENST00000253339.5:c.209A>T	p.Lys70Ile	p.K70I	ENST00000253339		70	aAa/aTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057811	27057811	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074440-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			335	184	497	0	ENST00000324856.7:c.1519C>G	p.Gln507Glu	p.Q507E	ENST00000324856	NM_006015.4	507	Caa/Gaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27059176	27059176	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0074440-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			263	33	267	0	ENST00000324856.7:c.1813C>T	p.Gln605Ter	p.Q605*	ENST00000324856	NM_006015.4	605	Caa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27059194	27059194	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0074440-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			189	129	304	1	ENST00000324856.7:c.1831C>T	p.Gln611Ter	p.Q611*	ENST00000324856	NM_006015.4	611	Cag/Tag																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50484057	50484057	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0074440-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			201	130	371	0	ENST00000394963.4:c.907C>T	p.Arg303Ter	p.R303*	ENST00000394963	NM_003076.4	303	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912660		P-0074440-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			176	171	388	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18274088	18274088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074440-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			344	75	437	0	ENST00000222254.8:c.1306G>A	p.Glu436Lys	p.E436K	ENST00000222254	NM_005027.3	436	Gag/Aag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164447	47164447	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0074440-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			188	98	443	0	ENST00000409792.3:c.1679C>G	p.Ser560Ter	p.S560*	ENST00000409792	NM_014159.6	560	tCa/tGa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057256	180057256	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074440-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			324	53	388	0	ENST00000261937.6:c.482C>G	p.Ser161Cys	p.S161C	ENST00000261937	NM_182925.4	161	tCc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs780442292		P-0081918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	118	498	0	ENST00000269305.4:c.401T>G	p.Phe134Cys	p.F134C	ENST00000269305	NM_001126112.2	134	tTt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578514	7578514	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0082375-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	61	415	1	ENST00000269305.4:c.416del	p.Lys139ArgfsTer31	p.K139Rfs*31	ENST00000269305	NM_001126112.2	139	aAg/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0082375-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	114	244	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180045863	180045863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082375-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	93	497	0	ENST00000261937.6:c.2908G>T	p.Asp970Tyr	p.D970Y	ENST00000261937	NM_182925.4	970	Gat/Tat																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645121	86645121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			35	32	645	0	ENST00000274376.6:c.1193G>A	p.Arg398Gln	p.R398Q	ENST00000274376	NM_002890.2	398	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			194	265	772	0	ENST00000269305.4:c.560-1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602822	10602822	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			199	200	618	0	ENST00000171111.5:c.756G>T	p.Trp252Cys	p.W252C	ENST00000171111	NM_203500.1	252	tgG/tgT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420939	49420939	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1481351694		P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	156	459	0	ENST00000301067.7:c.14810C>T	p.Pro4937Leu	p.P4937L	ENST00000301067	NM_003482.3	4937	cCc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112174759	112174759	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			200	135	736	0	ENST00000257430.4:c.3468A>T	p.Glu1156Asp	p.E1156D	ENST00000257430	NM_000038.5	1156	gaA/gaT																																																																															
RAD21	5885	MSKCC	GRCh37	8	117868887	117868887	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			180	115	446	0	ENST00000297338.2:c.812C>G	p.Ser271Ter	p.S271*	ENST00000297338	NM_006265.2	271	tCa/tGa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943784	9943784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			156	253	593	0	ENST00000330684.3:c.1157G>A	p.Arg386Lys	p.R386K	ENST00000330684	NM_001134407.1	386	aGg/aAg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14014201	14014201	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			142	250	527	0	ENST00000311895.7:c.179T>A	p.Leu60Gln	p.L60Q	ENST00000311895	NM_005236.2	60	cTg/cAg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126710	5126710	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			32	48	508	0	ENST00000381652.3:c.3318G>A	p.Trp1106Ter	p.W1106*	ENST00000381652	NM_004972.3	1106	tgG/tgA																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981741	101981741	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			304	192	510	0	ENST00000282441.5:c.162C>G	p.Ile54Met	p.I54M	ENST00000282441	NM_001130145.2	54	atC/atG																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89352521	89352521	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			141	220	526	0	ENST00000301030.4:c.818T>C	p.Val273Ala	p.V273A	ENST00000301030	NM_001256183.1	273	gTg/gCg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55130071	55130071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			106	123	597	0	ENST00000257290.5:c.605C>T	p.Pro202Leu	p.P202L	ENST00000257290	NM_006206.4	202	cCa/cTa																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230459268	230459268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			328	207	649	0	ENST00000525115.1:c.1271C>T	p.Ser424Leu	p.S424L	ENST00000525115		424	tCa/tTa																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51507373	51507373	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			190	136	478	0	ENST00000260433.2:c.915C>G	p.Ile305Met	p.I305M	ENST00000260433		305	atC/atG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178943792	178943792	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			84	41	370	0	ENST00000263967.3:c.2459T>A	p.Met820Lys	p.M820K	ENST00000263967	NM_006218.2	820	aTg/aAg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424083	47424083	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			147	322	624	0	ENST00000404338.3:c.2151A>T	p.Leu717Phe	p.L717F	ENST00000404338	NM_004491.4	717	ttA/ttT																																																																															
CARD11	84433	MSKCC	GRCh37	7	2954996	2954996	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			314	217	618	0	ENST00000396946.4:c.2714G>T	p.Arg905Met	p.R905M	ENST00000396946	NM_032415.4	905	aGg/aTg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78857714	78857714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	171	594	0	ENST00000306801.3:c.1784G>T	p.Gly595Val	p.G595V	ENST00000306801	NM_020761.2	595	gGc/gTc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56486605	56486605	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			299	193	563	0	ENST00000267101.3:c.1183+1G>A		p.X395_splice	ENST00000267101	NM_001982.3	395																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5212216	5212216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			128	234	624	0	ENST00000357368.4:c.4815G>T	p.Met1605Ile	p.M1605I	ENST00000357368	NM_002850.3	1605	atG/atT																																																																															
TERT	7015	MSKCC	GRCh37	5	1294138	1294138	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			485	209	600	0	ENST00000310581.5:c.863C>A	p.Ala288Glu	p.A288E	ENST00000310581	NM_198253.2	288	gCg/gAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041391	47041391	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			95	257	376	0	ENST00000329236.7:c.1501G>T	p.Gly501Cys	p.G501C	ENST00000329236	NM_001204466.1	501	Ggc/Tgc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719286	61719286	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			79	171	564	0	ENST00000401558.2:c.1771A>G	p.Ile591Val	p.I591V	ENST00000401558	NM_003400.3	591	Ata/Gta																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910362	29910362	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	228	1148	0	ENST00000376809.5:c.32T>A	p.Leu11Gln	p.L11Q	ENST00000376809	NM_002116.7	11	cTg/cAg																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30128062	30128062	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			178	291	633	0	ENST00000263025.4:c.1067C>A	p.Pro356His	p.P356H	ENST00000263025	NM_002746.2	356	cCt/cAt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16089905	16089905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			123	178	484	0	ENST00000268712.3:c.205C>T	p.Pro69Ser	p.P69S	ENST00000268712	NM_006311.3	69	Cct/Tct																																																																															
CDC42	998	MSKCC	GRCh37	1	22413288	22413288	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			15	55	99	0	ENST00000344548.3:c.415C>G	p.Pro139Ala	p.P139A	ENST00000344548	NM_001039802.1	139	Cca/Gca																																																																															
STK11	6794	MSKCC	GRCh37	19	1221302	1221303	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0082829-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			190	213	679	0	ENST00000326873.7:c.825_826delinsA	p.Gly276AlafsTer11	p.G276Afs*11	ENST00000326873	NM_000455.4	275	ccGGgc/ccAgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0084079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	209	430	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0084079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	143	342	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112154963	112154963	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660802		P-0084079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	148	350	0	ENST00000257430.4:c.1234C>T	p.Gln412Ter	p.Q412*	ENST00000257430	NM_000038.5	412	Cag/Tag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0084080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	31	389	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0084080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	94	233	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0084080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	79	403	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0084080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	62	410	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579533	7579533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0084080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	128	492	0	ENST00000269305.4:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000269305	NM_001126112.2	52	Caa/Taa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805318	89805318	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201494304		P-0084080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	182	445	0	ENST00000389301.3:c.4232C>T	p.Pro1411Leu	p.P1411L	ENST00000389301	NM_000135.2	1411	cCg/cTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66233141	66233141	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs146757388		P-0084080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	20	244	0	ENST00000273854.3:c.1858C>T	p.Arg620Trp	p.R620W	ENST00000273854	NM_004439.5	620	Cgg/Tgg																																																																															
RET	5979	MSKCC	GRCh37	10	43601998	43601998	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1183365192		P-0084080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	132	405	0	ENST00000355710.3:c.1042C>T	p.Arg348Trp	p.R348W	ENST00000355710	NM_020975.4	348	Cgg/Tgg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900335	3900335	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199768244		P-0084080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	37	405	0	ENST00000262367.5:c.761C>T	p.Ala254Val	p.A254V	ENST00000262367	NM_004380.2	254	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0084080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	65	230	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997798	149997799	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0084080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	150	354	0	ENST00000253339.5:c.2668dup	p.Arg890LysfsTer31	p.R890Kfs*31	ENST00000253339		890	aga/aAga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0084082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	191	325	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105553	27105553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0084082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	194	343	0	ENST00000324856.7:c.5164C>T	p.Arg1722Ter	p.R1722*	ENST00000324856	NM_006015.4	1722	Cga/Tga																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933459	49933459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	102	470	0	ENST00000296474.3:c.2731G>A	p.Gly911Arg	p.G911R	ENST00000296474	NM_002447.2	911	Ggg/Agg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231708	66231708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	33	291	0	ENST00000273854.3:c.1992C>G	p.His664Gln	p.H664Q	ENST00000273854	NM_004439.5	664	caC/caG																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500519	149500519	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200077894		P-0084082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	101	440	0	ENST00000261799.4:c.2518G>A	p.Val840Ile	p.V840I	ENST00000261799	NM_002609.3	840	Gtc/Atc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341183	8341183	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0084082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	88	384	0	ENST00000356435.5:c.5033T>C	p.Ile1678Thr	p.I1678T	ENST00000356435		1678	aTt/aCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	194	572	0	ENST00000269305.4:c.406C>G	p.Gln136Glu	p.Q136E	ENST00000269305	NM_001126112.2	136	Caa/Gaa																																																																															
BIRC3	330	MSKCC	GRCh37	11	102206786	102206786	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145025961		P-0084093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	73	427	0	ENST00000263464.3:c.1414G>A	p.Gly472Arg	p.G472R	ENST00000263464	NM_001165.4	472	Gga/Aga																																																																															
LYN	4067	MSKCC	GRCh37	8	56879393	56879393	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0084093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1177	103	471	0	ENST00000519728.1:c.910A>T	p.Arg304Trp	p.R304W	ENST00000519728	NM_002350.3	304	Agg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579349	7579349	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0084095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	71	502	0	ENST00000269305.4:c.338T>G	p.Phe113Cys	p.F113C	ENST00000269305	NM_001126112.2	113	tTc/tGc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717650	89717650	+	stop_gained	Nonsense_Mutation	SNP	T	T	G	rs1057520900		P-0084095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	55	359	0	ENST00000371953.3:c.675T>G	p.Tyr225Ter	p.Y225*	ENST00000371953	NM_000314.4	225	taT/taG																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33430327	33430328	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0084095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	65	485	0	ENST00000335858.7:c.347_348delinsAT	p.Met116Asn	p.M116N	ENST00000335858	NM_133629.2	116	aTG/aAT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610228	10610228	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0084095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	65	533	0	ENST00000171111.5:c.482T>C	p.Met161Thr	p.M161T	ENST00000171111	NM_203500.1	161	aTg/aCg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577290	64577290	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0084118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			50	201	466	0	ENST00000337652.1:c.292del	p.Arg98GlufsTer21	p.R98Efs*21	ENST00000337652	NM_130803.2	98	Cga/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0084135-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			216	42	549	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0084135-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	53	599	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																															
KDR	3791	MSKCC	GRCh37	4	55980402	55980402	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1357848255		P-0084135-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			203	38	494	0	ENST00000263923.4:c.689C>T	p.Pro230Leu	p.P230L	ENST00000263923	NM_002253.2	230	cCg/cTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920437	114920437	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0084135-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			452	72	487	0	ENST00000543371.1:c.1378T>C	p.Cys460Arg	p.C460R	ENST00000543371	NM_001198531.1	460	Tgc/Cgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0084135-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			249	52	581	0	ENST00000342988.3:c.1572G>A	p.Trp524Ter	p.W524*	ENST00000342988	NM_005359.5	524	tgG/tgA																																																																															
KDR	3791	MSKCC	GRCh37	4	55953900	55953900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1308888714		P-0084135-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			191	38	456	0	ENST00000263923.4:c.3536C>T	p.Pro1179Leu	p.P1179L	ENST00000263923	NM_002253.2	1179	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0084135-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	34	414	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MET	4233	MSKCC	GRCh37	7	116423458	116423458	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084135-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			335	25	478	0	ENST00000397752.3:c.3733C>G	p.Leu1245Val	p.L1245V	ENST00000397752	NM_000245.2	1245	Ctg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577095	7577096	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0084156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			57	418	610	0	ENST00000269305.4:c.842_843del	p.Asp281AlafsTer24	p.D281Afs*24	ENST00000269305	NM_001126112.2	281	gAC/g																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771987	135771988	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs118203743		P-0084156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	137	614	2	ENST00000298552.3:c.3127_3129dup	p.Ser1043dup	p.S1043dup	ENST00000298552	NM_001162426.1	1043	-/AGC																																																																															
CALR	811	MSKCC	GRCh37	19	13051472	13051940	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTTTGGGGCTCTGAGCAGGGCTGGGGCTCACAGTGGGGAGTGCACCAACCTTACTCACCCTTCGGTTTCCTTCTCCCTTCTGCAGGGTGAGTGGAAGCCCCGGCAGATCGACAACCCAGATTACAAGGGCACTTGGATCCACCCAGAAATTGACAACCCCGAGTATTCTCCCGATCCCAGTATCTATGCCTATGATAACTTTGGCGTGCTGGGCCTGGACCTCTGGCAGGTGAGACTTGGAGGAAAAAGGAGGATCCCTGGGGTACCTCAAGTGCATAAGATCACCCAAGAGGAAAGGGACAGGGTAGGCACCCCAGGTGAGTCTGACTCAAAAATGGTACTTCTTGTAAACAGTACTTCCTGGTCTGTCCCTGTGAAGTCCTCACAGCAACCCCTTTAAGGTTATACTTGCTGTGCACCAAGTACTTCCCCAAGTACTTTTATGCAAATCAACTTCTTTACCCCCAA	AGTTTGGGGCTCTGAGCAGGGCTGGGGCTCACAGTGGGGAGTGCACCAACCTTACTCACCCTTCGGTTTCCTTCTCCCTTCTGCAGGGTGAGTGGAAGCCCCGGCAGATCGACAACCCAGATTACAAGGGCACTTGGATCCACCCAGAAATTGACAACCCCGAGTATTCTCCCGATCCCAGTATCTATGCCTATGATAACTTTGGCGTGCTGGGCCTGGACCTCTGGCAGGTGAGACTTGGAGGAAAAAGGAGGATCCCTGGGGTACCTCAAGTGCATAAGATCACCCAAGAGGAAAGGGACAGGGTAGGCACCCCAGGTGAGTCTGACTCAAAAATGGTACTTCTTGTAAACAGTACTTCCTGGTCTGTCCCTGTGAAGTCCTCACAGCAACCCCTTTAAGGTTATACTTGCTGTGCACCAAGTACTTCCCCAAGTACTTTTATGCAAATCAACTTCTTTACCCCCAA	-			P-0084156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	176	637	0	ENST00000316448.5:c.816+6_960+241del		p.X272_splice	ENST00000316448	NM_004343.3	272																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0084157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	66	298	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523143	176523143	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	150	685	0	ENST00000292408.4:c.1907G>T	p.Gly636Val	p.G636V	ENST00000292408	NM_213647.1	636	gGc/gTc																																																																															
MED12	9968	MSKCC	GRCh37	X	70347896	70347896	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	40	509	0	ENST00000374080.3:c.3135G>C	p.Glu1045Asp	p.E1045D	ENST00000374080		1045	gaG/gaC																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609722	117609722	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1430294646		P-0084157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	46	534	0	ENST00000368508.3:c.6977C>T	p.Ser2326Phe	p.S2326F	ENST00000368508	NM_002944.2	2326	tCt/tTt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176675323	176675323	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0084157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	56	509	0	ENST00000439151.2:c.4639C>G	p.Gln1547Glu	p.Q1547E	ENST00000439151	NM_022455.4	1547	Cag/Gag																																																																															
REST	5978	MSKCC	GRCh37	4	57798093	57798093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	100	523	0	ENST00000309042.7:c.3069G>T	p.Met1023Ile	p.M1023I	ENST00000309042	NM_005612.4	1023	atG/atT																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119631609	119631611	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0084157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	102	428	0	ENST00000316626.5:c.655_657del	p.Ser219del	p.S219del	ENST00000316626		219	TCT/-																																																																															
STAG2	10735	MSKCC	GRCh37	X	123191723	123191723	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs762549395		P-0084157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	67	374	0	ENST00000218089.9:c.1312A>T	p.Ser438Cys	p.S438C	ENST00000218089	NM_001042749.1	438	Agt/Tgt																																																																															
RAD21	5885	MSKCC	GRCh37	8	117874162	117874162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	68	423	0	ENST00000297338.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000297338	NM_006265.2	98	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0084160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	94	486	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0084160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	81	541	0	ENST00000257430.4:c.4473del	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0084160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	14	627	0	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0084160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	66	339	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300028	137300028	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771630609		P-0084160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	43	398	0	ENST00000481739.1:c.313G>A	p.Glu105Lys	p.E105K	ENST00000481739	NM_002957.4	105	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112174022	112174023	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	AATTACATT			P-0084160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	72	527	0	ENST00000257430.4:c.2732_2740dup	p.His913_Cys914insTer	p.H913_C914ins*	ENST00000257430	NM_000038.5	911	gaa/gAATTACATTaa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0084164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	11	542	2	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729181	66729181	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121908595		P-0084164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	34	575	0	ENST00000307102.5:c.389A>G	p.Tyr130Cys	p.Y130C	ENST00000307102	NM_002755.3	130	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0084164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	49	335	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988457	36988457	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0084164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	42	507	0	ENST00000354822.5:c.196del	p.Ala66LeufsTer35	p.A66Lfs*35	ENST00000354822	NM_001079668.2	66	Gct/ct																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986757	36986758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0084164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	41	518	0	ENST00000354822.5:c.931dup	p.Ser311LysfsTer128	p.S311Kfs*128	ENST00000354822	NM_001079668.2	311	agc/aAgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0084234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	298	507	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121912580		P-0084234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	302	368	0	ENST00000342988.3:c.1157G>T	p.Gly386Val	p.G386V	ENST00000342988	NM_005359.5	386	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112173835	112173838	+	frameshift_variant	Frame_Shift_Del	DEL	AGAT	AGAT	-			P-0084234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	284	590	0	ENST00000257430.4:c.2547_2550del	p.Asp849GlufsTer11	p.D849Efs*11	ENST00000257430	NM_000038.5	848	aaAGAT/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175776	112175776	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0084234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	193	611	0	ENST00000257430.4:c.4485del	p.Ser1495ArgfsTer12	p.S1495Rfs*12	ENST00000257430	NM_000038.5	1495	agT/ag																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971306	13971306	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs959752124		P-0084234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	273	525	0	ENST00000405192.2:c.623G>A	p.Arg208His	p.R208H	ENST00000405192	NM_001163147.1	208	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089664	27089665	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0084234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	199	688	1	ENST00000324856.7:c.2623_2624dup	p.Met875IlefsTer17	p.M875Ifs*17	ENST00000324856	NM_006015.4	874	aat/aATat																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43738645	43738648	+	frameshift_variant	Frame_Shift_Del	DEL	TTCT	TTCT	-			P-0084234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	163	477	0	ENST00000382044.4:c.2977_2980del	p.Arg993Ter	p.R993*	ENST00000382044	NM_001141980.1	993	AGAAtg/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0084237-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	558	507	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0084237-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	458	529	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864457	162864457	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084237-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	136	426	0	ENST00000366898.1:c.56C>A	p.Ser19Tyr	p.S19Y	ENST00000366898	NM_004562.2	19	tCt/tAt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162622200	162622200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084237-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	324	573	1	ENST00000366898.1:c.497G>A	p.Cys166Tyr	p.C166Y	ENST00000366898	NM_004562.2	166	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0084288-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	199	384	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112154942	112154942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779780		P-0084288-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	176	290	0	ENST00000257430.4:c.1213C>T	p.Arg405Ter	p.R405*	ENST00000257430	NM_000038.5	405	Cga/Tga																																																																															
IGF1	3479	MSKCC	GRCh37	12	102869478	102869478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084288-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	101	288	0	ENST00000307046.8:c.163G>A	p.Gly55Arg	p.G55R	ENST00000307046	NM_001111285.1	55	Ggg/Agg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0084288-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	81	215	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366899	40366899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084288-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	61	284	0	ENST00000397332.2:c.298G>A	p.Gly100Arg	p.G100R	ENST00000397332	NM_001033082.2	100	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934874		P-0084329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	142	517	0	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578217	7578217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	145	469	0	ENST00000269305.4:c.632C>T	p.Thr211Ile	p.T211I	ENST00000269305	NM_001126112.2	211	aCt/aTt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289223	33289223	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	128	427	0	ENST00000374542.5:c.329C>G	p.Ser110Cys	p.S110C	ENST00000374542	NM_001141970.1	110	tCt/tGt																																																																															
SDHA	6389	MSKCC	GRCh37	5	223625	223625	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	65	257	0	ENST00000264932.6:c.92G>T	p.Arg31Leu	p.R31L	ENST00000264932	NM_004168.2	31	cGa/cTa																																																																															
ARAF	369	MSKCC	GRCh37	X	47424670	47424670	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	146	419	0	ENST00000377045.4:c.478G>C	p.Asp160His	p.D160H	ENST00000377045	NM_001654.4	160	Gat/Cat																																																																															
PARP1	142	MSKCC	GRCh37	1	226553696	226553696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	111	345	0	ENST00000366794.5:c.2464C>T	p.His822Tyr	p.H822Y	ENST00000366794	NM_001618.3	822	Cat/Tat																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790026	40790026	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	127	443	0	ENST00000373198.4:c.2705G>C	p.Arg902Thr	p.R902T	ENST00000373198	NM_133170.3	902	aGa/aCa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753516	42753516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	123	596	0	ENST00000222329.4:c.748G>A	p.Val250Met	p.V250M	ENST00000222329	NM_006494.2	250	Gtg/Atg																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363441	40363441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084173-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	25	370	0	ENST00000397332.2:c.788C>T	p.Pro263Leu	p.P263L	ENST00000397332	NM_001033082.2	263	cCc/cTc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130702	29130702	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779607427		P-0082514-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	92	406	0	ENST00000328354.6:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000328354	NM_007194.3	3	cGg/cAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15943759	15943759	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082514-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	118	220	0	ENST00000268712.3:c.6729del	p.Ser2244GlnfsTer49	p.S2244Qfs*49	ENST00000268712	NM_006311.3	2243	acG/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577524	7577534	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGGATGGGC	TGAGGATGGGC	-			P-0082514-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	164	375	0	ENST00000269305.4:c.747_757del	p.Arg249SerfsTer11	p.R249Sfs*11	ENST00000269305	NM_001126112.2	249	agGCCCATCCTCAcc/agcc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2221594	2221594	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			116	105	324	0	ENST00000326181.6:c.463G>T	p.Ala155Ser	p.A155S	ENST00000326181	NM_032271.2	155	Gcc/Tcc																																																																															
NF1	4763	MSKCC	GRCh37	17	29553465	29553465	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			44	35	312	0	ENST00000358273.4:c.2014G>T	p.Gly672Ter	p.G672*	ENST00000358273	NM_001042492.2	672	Gga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29554309	29554309	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			58	31	288	0	ENST00000358273.4:c.2325G>T	p.Glu775Asp	p.E775D	ENST00000358273	NM_001042492.2	775	gaG/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			148	90	268	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519999		P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			175	55	270	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																															
AKT2	208	MSKCC	GRCh37	19	40743886	40743886	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434593		P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			132	80	330	0	ENST00000392038.2:c.821G>A	p.Arg274His	p.R274H	ENST00000392038	NM_001626.4	274	cGc/cAc																																																																															
FYN	2534	MSKCC	GRCh37	6	112025220	112025220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			109	10	294	0	ENST00000368678.4:c.529G>A	p.Glu177Lys	p.E177K	ENST00000368678		177	Gag/Aag																																																																															
ETV1	2115	MSKCC	GRCh37	7	13978749	13978749	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			80	137	265	0	ENST00000405192.2:c.358A>G	p.Asn120Asp	p.N120D	ENST00000405192	NM_001163147.1	120	Aat/Gat																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933497	39933497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			211	47	467	0	ENST00000378444.4:c.1102C>T	p.Pro368Ser	p.P368S	ENST00000378444	NM_001123385.1	368	Cct/Tct																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439882	51439882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			120	83	323	0	ENST00000262662.1:c.447G>T	p.Arg149Ser	p.R149S	ENST00000262662		149	agG/agT																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114116	115114116	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			77	25	298	0	ENST00000257566.3:c.1099+2T>A		p.X367_splice	ENST00000257566	NM_016569.3	367																																																																																
ETV6	2120	MSKCC	GRCh37	12	12022733	12022734	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			121	54	451	0	ENST00000396373.4:c.844dup	p.Arg282ProfsTer18	p.R282Pfs*18	ENST00000396373	NM_001987.4	280	aac/aaCc																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945015	31945015	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			169	79	434	0	ENST00000340398.3:c.86G>T	p.Ser29Ile	p.S29I	ENST00000340398	NM_001013699.2	29	aGc/aTc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008335	29008335	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			71	57	296	0	ENST00000282397.4:c.536C>G	p.Pro179Arg	p.P179R	ENST00000282397	NM_002019.4	179	cCt/cGt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43766924	43766924	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			55	77	274	0	ENST00000382044.4:c.1127G>T	p.Arg376Leu	p.R376L	ENST00000382044	NM_001141980.1	376	cGa/cTa																																																																															
B2M	567	MSKCC	GRCh37	15	45003795	45003795	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			188	14	339	0	ENST00000558401.1:c.52del	p.Leu18TrpfsTer26	p.L18Wfs*26	ENST00000558401	NM_004048.2	17	ggC/gg																																																																															
USP8	9101	MSKCC	GRCh37	15	50782652	50782652	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			36	54	409	0	ENST00000307179.4:c.2164A>T	p.Ile722Leu	p.I722L	ENST00000307179		722	Ata/Tta																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618910	37618910	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			121	69	398	0	ENST00000447079.4:c.586G>C	p.Asp196His	p.D196H	ENST00000447079	NM_015083.1	196	Gac/Cac																																																																															
AXL	558	MSKCC	GRCh37	19	41727838	41727838	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			161	74	323	0	ENST00000301178.4:c.463C>A	p.Pro155Thr	p.P155T	ENST00000301178	NM_021913.4	155	Ccc/Acc																																																																															
BARD1	580	MSKCC	GRCh37	2	215610521	215610521	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			60	11	240	0	ENST00000260947.4:c.1735T>G	p.Ser579Ala	p.S579A	ENST00000260947	NM_000465.2	579	Tca/Gca																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965356	25965356	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			117	70	470	0	ENST00000435504.4:c.3850A>T	p.Ser1284Cys	p.S1284C	ENST00000435504		1284	Agc/Tgc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47084082	47084082	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			46	63	430	0	ENST00000409792.3:c.7207G>T	p.Gly2403Trp	p.G2403W	ENST00000409792	NM_014159.6	2403	Ggg/Tgg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71015171	71015171	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			26	37	297	0	ENST00000318789.4:c.1759A>T	p.Thr587Ser	p.T587S	ENST00000318789	NM_032682.5	587	Acc/Tcc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197773	66197773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			10	14	323	0	ENST00000273854.3:c.2926G>T	p.Ala976Ser	p.A976S	ENST00000273854	NM_004439.5	976	Gca/Tca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402784	139402784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			193	51	368	0	ENST00000277541.6:c.3225G>T	p.Trp1075Cys	p.W1075C	ENST00000277541	NM_017617.3	1075	tgG/tgT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389331	8389331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			55	29	272	0	ENST00000356435.5:c.4287G>T	p.Gln1429His	p.Q1429H	ENST00000356435		1429	caG/caT																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473653	67473653	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223737		P-0084171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	105	413	0	ENST00000327367.4:c.733G>A	p.Gly245Arg	p.G245R	ENST00000327367	NM_005902.3	245	Ggg/Agg																																																																															
BRAF	673	MSKCC	GRCh37	7	140494163	140494163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	86	577	0	ENST00000288602.6:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000288602	NM_004333.4	362	cGa/cAa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368203	45368203	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0084171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	68	386	0	ENST00000262160.6:c.1399del	p.Ser467HisfsTer13	p.S467Hfs*13	ENST00000262160	NM_005901.5	467	Tca/ca																																																																															
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0084171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	48	472	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																															
PREX2	80243	MSKCC	GRCh37	8	68972969	68972969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751789846		P-0084171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	29	329	0	ENST00000288368.4:c.1294G>A	p.Val432Met	p.V432M	ENST00000288368	NM_024870.2	432	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0084171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	27	289	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151896364	151896364	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0084171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	45	388	0	ENST00000262189.6:c.4273G>T	p.Gly1425Cys	p.G1425C	ENST00000262189	NM_170606.2	1425	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112174131	112174131	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0084171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	48	527	0	ENST00000257430.4:c.2840del	p.Cys947PhefsTer8	p.C947Ffs*8	ENST00000257430	NM_000038.5	947	tGt/tt																																																																															
CDK8	1024	MSKCC	GRCh37	13	26971364	26971364	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0084171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	33	376	0	ENST00000381527.3:c.933+2T>C		p.X311_splice	ENST00000381527	NM_001260.1	311																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0084172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	55	397	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368208	45368208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	120	394	0	ENST00000262160.6:c.1394G>A	p.Ser465Asn	p.S465N	ENST00000262160	NM_005901.5	465	aGc/aAc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473635	67473635	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906853		P-0084172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	116	408	0	ENST00000327367.4:c.715G>A	p.Glu239Lys	p.E239K	ENST00000327367	NM_005902.3	239	Gag/Aag																																																																															
RXRA	6256	MSKCC	GRCh37	9	137293553	137293553	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750305277		P-0084172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	35	569	0	ENST00000481739.1:c.104C>T	p.Pro35Leu	p.P35L	ENST00000481739	NM_002957.4	35	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0084172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	65	297	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175800	112175801	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCCAGCCTGAGTGCTCT			P-0084172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	47	489	0	ENST00000257430.4:c.4510_4526dup	p.Ser1510ProfsTer3	p.S1510Pfs*3	ENST00000257430	NM_000038.5	1503	-/TCCAGCCTGAGTGCTCT																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910792	29910792	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0084172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	109	309	0	ENST00000376809.5:c.332A>G	p.Gln111Arg	p.Q111R	ENST00000376809	NM_002116.7	111	cAg/cGg																																																																															
ATM	472	MSKCC	GRCh37	11	108172413	108172413	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0084172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	35	379	0	ENST00000278616.4:c.5216A>G	p.Asn1739Ser	p.N1739S	ENST00000278616	NM_000051.3	1739	aAc/aGc																																																																															
APC	324	MSKCC	GRCh37	5	112164574	112164574	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0084172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	59	392	0	ENST00000257430.4:c.1649del	p.Asn550IlefsTer8	p.N550Ifs*8	ENST00000257430	NM_000038.5	550	Aat/at																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549470	187549470	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0084172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	59	485	0	ENST00000441802.2:c.4648G>C	p.Val1550Leu	p.V1550L	ENST00000441802	NM_005245.3	1550	Gtc/Ctc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094360	27094360	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0084172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	52	506	0	ENST00000324856.7:c.3068G>T	p.Trp1023Leu	p.W1023L	ENST00000324856	NM_006015.4	1023	tGg/tTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972954	25972954	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0084172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	62	481	0	ENST00000435504.4:c.1471C>T	p.Gln491Ter	p.Q491*	ENST00000435504		491	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0081380-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			345	67	331	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0081380-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			477	239	567	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0084119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	14	350	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0084119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	47	221	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0084201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	42	330	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24134080	24134080	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0084201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	31	550	0	ENST00000263121.7:c.231G>T	p.Lys77Asn	p.K77N	ENST00000263121	NM_003073.3	77	aaG/aaT																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0084203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	222	447	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266711	198266711	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0084203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	191	493	0	ENST00000335508.6:c.2221A>G	p.Lys741Glu	p.K741E	ENST00000335508	NM_012433.2	741	Aag/Gag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0084203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	155	387	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591865	48591866	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAGCTGCCCTATTGTTACTGTTGATGGAT			P-0084203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	167	628	0	ENST00000342988.3:c.1030_1058dup	p.Tyr353Ter	p.Y353*	ENST00000342988	NM_005359.5	343	tca/tcAAGCTGCCCTATTGTTACTGTTGATGGATa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266007	41266408	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGA	GTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGA	-			P-0084203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	268	411	0	ENST00000349496.5:c.14-10_242-37del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
DOT1L	84444	MSKCC	GRCh37	19	2210726	2210726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0084203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	143	641	0	ENST00000398665.3:c.1223G>A	p.Gly408Asp	p.G408D	ENST00000398665	NM_032482.2	408	gGc/gAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044719	47044719	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0084205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	25	412	0	ENST00000329236.7:c.1885C>T	p.Gln629Ter	p.Q629*	ENST00000329236	NM_001204466.1	629	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398286	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0084205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	8	403	0	ENST00000256078.4:c.33_34delinsCT	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	11	gcTGgt/gcCTgt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729393	41729393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0084205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	20	566	1	ENST00000242208.4:c.1136G>A	p.Arg379Gln	p.R379Q	ENST00000242208	NM_002192.2	379	cGg/cAg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467761	99467761	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0084205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	20	560	0	ENST00000268035.6:c.2630G>C	p.Arg877Pro	p.R877P	ENST00000268035	NM_000875.3	877	cGa/cCa																																																																															
EP300	2033	MSKCC	GRCh37	22	41531880	41531880	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0068311-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			64	221	256	0	ENST00000263253.7:c.1592C>G	p.Ser531Ter	p.S531*	ENST00000263253	NM_001429.3	531	tCa/tGa																																																																															
NF2	4771	MSKCC	GRCh37	22	30061031	30061031	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0068311-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			68	255	252	0	ENST00000338641.4:c.863C>G	p.Ser288Ter	p.S288*	ENST00000338641	NM_000268.3	288	tCa/tGa																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46511735	46511735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068311-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			173	75	234	0	ENST00000262741.5:c.1042G>A	p.Glu348Lys	p.E348K	ENST00000262741	NM_003629.3	348	Gaa/Aaa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618598	37618598	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068311-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			375	124	387	0	ENST00000447079.4:c.274G>C	p.Asp92His	p.D92H	ENST00000447079	NM_015083.1	92	Gac/Cac																																																																															
MGA	23269	MSKCC	GRCh37	15	42042472	42042472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068311-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			89	259	386	0	ENST00000219905.7:c.6667G>A	p.Asp2223Asn	p.D2223N	ENST00000219905	NM_001164273.1	2223	Gac/Aac																																																																															
KIT	3815	MSKCC	GRCh37	4	55602964	55602964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068311-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			237	75	287	0	ENST00000288135.5:c.2674C>A	p.Pro892Thr	p.P892T	ENST00000288135	NM_000222.2	892	Cct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0068311-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			217	339	222	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108117703	108117703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068311-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			126	76	242	0	ENST00000278616.4:c.914C>T	p.Ser305Leu	p.S305L	ENST00000278616	NM_000051.3	305	tCa/tTa																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300792	137300792	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068311-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			251	211	303	0	ENST00000481739.1:c.437A>T	p.His146Leu	p.H146L	ENST00000481739	NM_002957.4	146	cAc/cTc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912835	50912835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068311-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			55	153	300	0	ENST00000440232.2:c.2066G>T	p.Arg689Leu	p.R689L	ENST00000440232	NM_002691.3	689	cGg/cTg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123202414	123202414	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0068311-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			193	52	191	0	ENST00000218089.9:c.2266G>T	p.Glu756Ter	p.E756*	ENST00000218089	NM_001042749.1	756	Gag/Tag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820748	3820749	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068311-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			320	181	411	0	ENST00000262367.5:c.2702dup	p.Thr902AspfsTer68	p.T902Dfs*68	ENST00000262367	NM_004380.2	901	ccg/ccCg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95578527	95578527	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068311-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			169	137	260	0	ENST00000343455.3:c.2098G>C	p.Glu700Gln	p.E700Q	ENST00000343455	NM_177438.2	700	Gag/Cag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187699	11187699	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068311-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			189	72	316	0	ENST00000361445.4:c.6198G>T	p.Lys2066Asn	p.K2066N	ENST00000361445	NM_004958.3	2066	aaG/aaT																																																																															
CD276	80381	MSKCC	GRCh37	15	73996023	73996023	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068311-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			142	171	348	0	ENST00000318443.5:c.757G>T	p.Glu253Ter	p.E253*	ENST00000318443	NM_001024736.1	253	Gag/Tag																																																																															
POT1	25913	MSKCC	GRCh37	7	124492007	124492013	+	splice_acceptor_variant,intron_variant	Splice_Site	ONP	TATAATT	TATAATT	CAAAATA			P-0068311-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			150	135	180	0	ENST00000357628.3:c.870-8_870-2delinsTATTTTG		p.X290_splice	ENST00000357628	NM_015450.2	290																																																																																
TNFRSF14	8764	MSKCC	GRCh37	1	2494684	2494684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	46	645	0	ENST00000355716.4:c.824C>T	p.Ser275Leu	p.S275L	ENST00000355716	NM_003820.2	275	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0080632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	123	553	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0080632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	79	429	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	104	399	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0080632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	12	540	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0080632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	63	380	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31405796	31405796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	98	321	0	ENST00000344624.3:c.3982G>A	p.Ala1328Thr	p.A1328T	ENST00000344624		1328	Gcg/Acg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519997		P-0082689-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			287	354	545	0	ENST00000269305.4:c.332T>G	p.Leu111Arg	p.L111R	ENST00000269305	NM_001126112.2	111	cTg/cGg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44896898	44896898	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0082689-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			189	131	242	0	ENST00000377967.4:c.620-2A>G		p.X207_splice	ENST00000377967	NM_021140.2	207																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48604632	48604632	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0082689-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			229	249	418	0	ENST00000342988.3:c.1454C>G	p.Ser485Ter	p.S485*	ENST00000342988	NM_005359.5	485	tCa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0082689-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			259	180	264	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472619	88472619	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0083041-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	18	530	0	ENST00000360948.2:c.1936C>T	p.Gln646Ter	p.Q646*	ENST00000360948	NM_001012338.2	646	Cag/Tag																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149437134	149437134	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083041-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			209	11	554	0	ENST00000286301.3:c.2154G>C	p.Gln718His	p.Q718H	ENST00000286301	NM_005211.3	718	caG/caC																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737349	145737358	+	frameshift_variant	Frame_Shift_Del	DEL	CCTTCCTCTT	CCTTCCTCTT	-			P-0083041-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	15	738	0	ENST00000428558.2:c.3329_3338del	p.Glu1110GlyfsTer37	p.E1110Gfs*37	ENST00000428558	NM_004260.3	1110	gAAGAGGAAGGg/gg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47699360	47699360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083118-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			242	23	351	0	ENST00000347630.2:c.148G>A	p.Glu50Lys	p.E50K	ENST00000347630	NM_001007230.1	50	Gaa/Aaa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028895	47028895	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0083118-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			554	163	410	0	ENST00000329236.7:c.199G>T	p.Glu67Ter	p.E67*	ENST00000329236	NM_001204466.1	67	Gag/Tag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2202730	2202730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083118-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			484	154	431	0	ENST00000398665.3:c.739C>T	p.Pro247Ser	p.P247S	ENST00000398665	NM_032482.2	247	Cct/Tct																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40710521	40710521	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0083118-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			268	31	428	0	ENST00000373198.4:c.4329+1G>T		p.X1443_splice	ENST00000373198	NM_133170.3	1443																																																																																
TP53BP1	7158	MSKCC	GRCh37	15	43738759	43738759	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766450587		P-0083118-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			300	44	483	0	ENST00000382044.4:c.2866G>A	p.Ala956Thr	p.A956T	ENST00000382044	NM_001141980.1	956	Gca/Aca																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602391	10602391	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083118-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			856	235	605	0	ENST00000171111.5:c.1187A>G	p.Tyr396Cys	p.Y396C	ENST00000171111	NM_203500.1	396	tAc/tGc																																																																															
NF1	4763	MSKCC	GRCh37	17	29592358	29592358	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs1085307819		P-0083118-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			132	24	295	0	ENST00000358273.4:c.4835+1G>T		p.X1612_splice	ENST00000358273	NM_001042492.2	1612																																																																																
PAK7	57144	MSKCC	GRCh37	20	9543602	9543602	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0083118-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			217	20	366	0	ENST00000353224.5:c.1552G>T	p.Glu518Ter	p.E518*	ENST00000353224	NM_177990.2	518	Gag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29508796	29508804	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TATGGCTGG	TATGGCTGG	-			P-0083118-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			277	22	339	0	ENST00000358273.4:c.725_730+3del		p.X242_splice	ENST00000358273	NM_001042492.2	242																																																																																
ATM	472	MSKCC	GRCh37	11	108186595	108186595	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0083118-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			326	22	419	0	ENST00000278616.4:c.6052T>A	p.Leu2018Met	p.L2018M	ENST00000278616	NM_000051.3	2018	Ttg/Atg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101988	11101988	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083118-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			710	195	454	0	ENST00000344626.4:c.1408C>T	p.Gln470Ter	p.Q470*	ENST00000344626	NM_003072.3	470	Cag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29684029	29684029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083118-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			151	18	372	0	ENST00000358273.4:c.7790C>T	p.Ser2597Leu	p.S2597L	ENST00000358273	NM_001042492.2	2597	tCa/tTa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31386420	31386420	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083118-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			789	156	428	0	ENST00000328111.2:c.1645T>C	p.Phe549Leu	p.F549L	ENST00000328111	NM_006892.3	549	Ttc/Ctc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220590	1220591	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0083118-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			798	198	580	0	ENST00000326873.7:c.608_609insT	p.Phe204ValfsTer62	p.F204Vfs*62	ENST00000326873	NM_000455.4	203	ccg/ccTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0083120-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			545	40	490	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060815	38060819	+	frameshift_variant	Frame_Shift_Del	DEL	GGTCC	GGTCC	ACT			P-0083141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	49	572	1	ENST00000250448.2:c.1170_1174delinsAGT	p.Asp391ValfsTer23	p.D391Vfs*23	ENST00000250448	NM_004496.3	390	ggGGACCcc/ggAGTcc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087940	27087940	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083555-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			627	42	386	0	ENST00000324856.7:c.2227C>T	p.Gln743Ter	p.Q743*	ENST00000324856	NM_006015.4	743	Caa/Taa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944557	40944557	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083555-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			557	108	410	0	ENST00000373198.4:c.1945C>A	p.Pro649Thr	p.P649T	ENST00000373198	NM_133170.3	649	Ccc/Acc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212522534	212522534	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs878927700		P-0083555-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			622	151	410	0	ENST00000342788.4:c.1891C>T	p.His631Tyr	p.H631Y	ENST00000342788	NM_005235.2	631	Cat/Tat																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139562789	139562789	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375577490		P-0083555-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			631	47	526	1	ENST00000308874.7:c.55G>A	p.Gly19Ser	p.G19S	ENST00000308874		19	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0083555-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			323	89	227	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38279332	38279332	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083555-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			491	112	425	0	ENST00000425967.3:c.1157G>C	p.Trp386Ser	p.W386S	ENST00000425967	NM_001174067.1	386	tGg/tCg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115385	115115385	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0083555-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			390	43	245	0	ENST00000257566.3:c.941G>T	p.Arg314Ile	p.R314I	ENST00000257566	NM_016569.3	314	aGa/aTa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163923	152163923	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0083555-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			370	91	307	1	ENST00000206249.3:c.643+1G>T		p.X215_splice	ENST00000206249	NM_000125.3	215																																																																																
XIAP	331	MSKCC	GRCh37	X	123019793	123019793	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0083555-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			422	35	372	0	ENST00000355640.3:c.281A>T	p.Asn94Ile	p.N94I	ENST00000355640		94	aAc/aTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188880	32188880	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083555-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			523	125	575	0	ENST00000375023.3:c.674G>T	p.Gly225Val	p.G225V	ENST00000375023	NM_004557.3	225	gGg/gTg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459511	50459511	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0083555-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			581	123	341	0	ENST00000331340.3:c.800T>A	p.Leu267Gln	p.L267Q	ENST00000331340	NM_006060.4	267	cTa/cAa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43700158	43700158	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0083555-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			523	28	316	0	ENST00000382044.4:c.5729C>G	p.Ser1910Ter	p.S1910*	ENST00000382044	NM_001141980.1	1910	tCa/tGa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039441	47039441	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	C			P-0083555-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			350	97	447	0	ENST00000329236.7:c.828+5T>C		p.X276_splice	ENST00000329236	NM_001204466.1	276																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0083907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	51	658	2	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0083907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	28	401	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDK8	1024	MSKCC	GRCh37	13	26970491	26970491	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs201577656		P-0083907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	10	360	0	ENST00000381527.3:c.860C>T	p.Thr287Met	p.T287M	ENST00000381527	NM_001260.1	287	aCg/aTg																																																																															
AKT1	207	MSKCC	GRCh37	14	105236728	105236728	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770370100		P-0083907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	47	529	0	ENST00000349310.3:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000349310	NM_001014432.1	465	Cgc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829114	72829115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0083907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	35	728	0	ENST00000268489.5:c.7466dup	p.Pro2490SerfsTer44	p.P2490Sfs*44	ENST00000268489	NM_006885.3	2489	cct/ccCt																																																																															
EZH1	2145	MSKCC	GRCh37	17	40860063	40860063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	45	524	0	ENST00000428826.2:c.1573G>A	p.Asp525Asn	p.D525N	ENST00000428826		525	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0083907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	63	648	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17950344	17950344	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	29	596	0	ENST00000458235.1:c.1383del	p.Leu462CysfsTer3	p.L462Cfs*3	ENST00000458235	NM_000215.3	461	ggG/gg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295795	212295795	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369248674		P-0083907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	40	507	0	ENST00000342788.4:c.2518G>A	p.Val840Ile	p.V840I	ENST00000342788	NM_005235.2	840	Gtt/Att																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0083907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	58	591	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0083910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	87	541	0	ENST00000257430.4:c.4128T>A	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taA																																																																															
TP53	7157	MSKCC	GRCh37	17	7579554	7579555	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0083910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	183	648	0	ENST00000269305.4:c.132dup	p.Leu45AlafsTer7	p.L45Afs*7	ENST00000269305	NM_001126112.2	44	-/G																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851273	156851273	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763591781		P-0083910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	62	488	0	ENST00000524377.1:c.2230C>T	p.Arg744Cys	p.R744C	ENST00000524377	NM_002529.3	744	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0083910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	98	355	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112162825	112162825	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0083910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	144	370	0	ENST00000257430.4:c.1429G>T	p.Glu477Ter	p.E477*	ENST00000257430	NM_000038.5	477	Gaa/Taa																																																																															
ATRX	546	MSKCC	GRCh37	X	76952109	76952109	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0083910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	21	194	0	ENST00000373344.5:c.326A>C	p.Asn109Thr	p.N109T	ENST00000373344	NM_000489.3	109	aAt/aCt																																																																															
APC	324	MSKCC	GRCh37	5	112178177	112178177	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0083910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	83	551	0	ENST00000257430.4:c.6886A>T	p.Ser2296Cys	p.S2296C	ENST00000257430	NM_000038.5	2296	Agt/Tgt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68930131	68930131	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0083910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	24	394	0	ENST00000288368.4:c.192T>A	p.Asn64Lys	p.N64K	ENST00000288368	NM_024870.2	64	aaT/aaA																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554193	63554195	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0083910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	96	687	0	ENST00000307078.5:c.544_546del	p.Met182del	p.M182del	ENST00000307078	NM_004655.3	182	ATG/-																																																																															
AGO2	27161	MSKCC	GRCh37	8	141557616	141557616	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	28	525	0	ENST00000220592.5:c.1699A>G	p.Ile567Val	p.I567V	ENST00000220592	NM_012154.3	567	Atc/Gtc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0083928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	77	509	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0083928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	43	535	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047963	180047963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	30	639	0	ENST00000261937.6:c.2212G>A	p.Val738Met	p.V738M	ENST00000261937	NM_182925.4	738	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0083928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	60	344	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0083930-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	171	422	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127411	55127411	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0083930-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	112	458	0	ENST00000257290.5:c.199T>A	p.Ser67Thr	p.S67T	ENST00000257290	NM_006206.4	67	Tcc/Acc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0083932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	154	356	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
RET	5979	MSKCC	GRCh37	10	43614979	43614979	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0083932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	138	408	0	ENST00000355710.3:c.2393G>T	p.Gly798Val	p.G798V	ENST00000355710	NM_020975.4	798	gGc/gTc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456449	32456449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	134	401	0	ENST00000332351.3:c.443G>T	p.Gly148Val	p.G148V	ENST00000332351	NM_024426.4	148	gGc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0083932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	106	300	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602645	10602645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	173	471	0	ENST00000171111.5:c.933C>A	p.His311Gln	p.H311Q	ENST00000171111	NM_203500.1	311	caC/caA																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62321140	62321140	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T			P-0083932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			813	188	510	0	ENST00000482936.1:c.2063C>T	p.Ser688Phe	p.S688F	ENST00000482936		688	tCc/tTc																																																																															
STK40	83931	MSKCC	GRCh37	1	36820983	36820983	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs781374833		P-0083932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	183	469	0	ENST00000373129.3:c.394A>G	p.Lys132Glu	p.K132E	ENST00000373129	NM_032017.1	132	Aag/Gag																																																																															
TERT	7015	MSKCC	GRCh37	5	1296080	1296080	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0083932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	193	529	0				ENST00000310581	NM_198253.2																																																																																	
INHBA	3624	MSKCC	GRCh37	7	41729546	41729546	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	165	566	0	ENST00000242208.4:c.983T>C	p.Val328Ala	p.V328A	ENST00000242208	NM_002192.2	328	gTc/gCc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62294226	62294226	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	G	rs1372480426		P-0083932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			728	199	394	0	ENST00000482936.1:c.522C>G	p.Phe174Leu	p.F174L	ENST00000482936		174	ttC/ttG																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151851394	151851394	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	177	450	0	ENST00000262189.6:c.12097C>G	p.Pro4033Ala	p.P4033A	ENST00000262189	NM_170606.2	4033	Ccg/Gcg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39576603	39576603	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0083932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	111	311	0	ENST00000262039.4:c.893T>C	p.Ile298Thr	p.I298T	ENST00000262039	NM_002647.2	298	aTt/aCt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207158	1207161	+	frameshift_variant	Frame_Shift_Del	DEL	GAAG	GAAG	AAA			P-0083932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	166	480	0	ENST00000326873.7:c.246_249delinsAAA	p.Lys84SerfsTer12	p.K84Sfs*12	ENST00000326873	NM_000455.4	82	aaGAAG/aaAAA																																																																															
RB1	5925	MSKCC	GRCh37	13	48955538	48955538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913303		P-0083938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			89	422	370	0	ENST00000267163.4:c.1654C>T	p.Arg552Ter	p.R552*	ENST00000267163	NM_000321.2	552	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0083938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	378	450	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27107195	27107195	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0083938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	420	541	0	ENST00000324856.7:c.6806C>A	p.Ser2269Ter	p.S2269*	ENST00000324856	NM_006015.4	2269	tCa/tAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0083938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	199	336	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873734	151873734	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200545875		P-0083938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			761	207	563	0	ENST00000262189.6:c.8804C>T	p.Ser2935Leu	p.S2935L	ENST00000262189	NM_170606.2	2935	tCg/tTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49442958	49442958	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781066696		P-0083938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	102	461	0	ENST00000301067.7:c.3950G>A	p.Gly1317Glu	p.G1317E	ENST00000301067	NM_003482.3	1317	gGa/gAa																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793211	139793211	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	111	344	0	ENST00000247668.2:c.19A>G	p.Thr7Ala	p.T7A	ENST00000247668	NM_021138.3	7	Acc/Gcc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135100	11135100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	171	371	0	ENST00000344626.4:c.3067G>A	p.Glu1023Lys	p.E1023K	ENST00000344626	NM_003072.3	1023	Gag/Aag																																																																															
CIC	23152	MSKCC	GRCh37	19	42793517	42793517	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	107	504	0	ENST00000575354.2:c.1319G>C	p.Arg440Pro	p.R440P	ENST00000575354	NM_015125.3	440	cGc/cCc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89839754	89839754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	108	416	0	ENST00000389301.3:c.1939G>A	p.Glu647Lys	p.E647K	ENST00000389301	NM_000135.2	647	Gag/Aag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857196	9857196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	133	536	0	ENST00000330684.3:c.4205G>T	p.Arg1402Leu	p.R1402L	ENST00000330684	NM_001134407.1	1402	cGg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420547	49420547	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0083949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	124	540	0	ENST00000301067.7:c.15202G>T	p.Glu5068Ter	p.E5068*	ENST00000301067	NM_003482.3	5068	Gag/Tag																																																																															
CD79A	973	MSKCC	GRCh37	19	42383128	42383128	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs557160710		P-0083949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	107	460	0	ENST00000221972.3:c.148G>A	p.Ala50Thr	p.A50T	ENST00000221972	NM_021601.3	50	Gcc/Acc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508881	106508881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	122	522	0	ENST00000359195.3:c.875G>T	p.Trp292Leu	p.W292L	ENST00000359195	NM_002649.2	292	tGg/tTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101086	41101086	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs776769442		P-0083949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	102	513	0	ENST00000373198.4:c.1270G>T	p.Val424Leu	p.V424L	ENST00000373198	NM_133170.3	424	Gtg/Ttg																																																																															
ATM	472	MSKCC	GRCh37	11	108173675	108173675	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	70	424	0	ENST00000278616.4:c.5415G>T	p.Trp1805Cys	p.W1805C	ENST00000278616	NM_000051.3	1805	tgG/tgT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444861	49444861	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0083949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	154	664	0	ENST00000301067.7:c.2605G>T	p.Glu869Ter	p.E869*	ENST00000301067	NM_003482.3	869	Gag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873428	151873428	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0083949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	369	508	0	ENST00000262189.6:c.9110T>A	p.Leu3037Ter	p.L3037*	ENST00000262189	NM_170606.2	3037	tTa/tAa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103504542	103504542	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	71	390	0	ENST00000355739.4:c.163C>G	p.Leu55Val	p.L55V	ENST00000355739	NM_000123.3	55	Ctt/Gtt																																																																															
CDK8	1024	MSKCC	GRCh37	13	26974624	26974624	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	77	329	0	ENST00000381527.3:c.968G>T	p.Arg323Leu	p.R323L	ENST00000381527	NM_001260.1	323	cGa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577605	7577619	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAACCTAGGAGATAA	CAACCTAGGAGATAA	-			P-0083949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	96	392	0	ENST00000269305.4:c.673-11_676del		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
MSI1	4440	MSKCC	GRCh37	12	120783979	120783979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	124	467	0	ENST00000257552.2:c.1006G>T	p.Ala336Ser	p.A336S	ENST00000257552	NM_002442.3	336	Gcc/Tcc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672749	30672749	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1331735866		P-0083949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	150	739	0	ENST00000376406.3:c.4211C>T	p.Pro1404Leu	p.P1404L	ENST00000376406	NM_014641.2	1404	cCt/cTt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964515	70964515	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	123	503	0	ENST00000276594.2:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000276594	NM_024504.3	505	Cgc/Ggc																																																																															
CD79B	974	MSKCC	GRCh37	17	62006793	62006793	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0083949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	132	511	0	ENST00000392795.3:c.594+1G>T		p.X198_splice	ENST00000392795	NM_001039933.1	198																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212289004	212289004	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs374581758		P-0083949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	78	409	0	ENST00000342788.4:c.2742G>T	p.Met914Ile	p.M914I	ENST00000342788	NM_005235.2	914	atG/atT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853346	151853346	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	346	479	0	ENST00000262189.6:c.11756G>C	p.Gly3919Ala	p.G3919A	ENST00000262189	NM_170606.2	3919	gGt/gCt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860102	57860102	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	105	431	0	ENST00000228682.2:c.842C>A	p.Pro281His	p.P281H	ENST00000228682	NM_005269.2	281	cCc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0083955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	59	221	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	83	280	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870985	12870986	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0083955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	116	452	0	ENST00000228872.4:c.215dup	p.Lys73GlnfsTer52	p.K73Qfs*52	ENST00000228872	NM_004064.3	71	gag/gaGg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101195	27101195	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	114	536	0	ENST00000324856.7:c.4477C>T	p.Gln1493Ter	p.Q1493*	ENST00000324856	NM_006015.4	1493	Cag/Tag																																																																															
RET	5979	MSKCC	GRCh37	10	43623634	43623634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	109	458	0	ENST00000355710.3:c.3262C>T	p.Pro1088Ser	p.P1088S	ENST00000355710	NM_020975.4	1088	Cca/Tca																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061168	38061169	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0083955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	96	446	0	ENST00000250448.2:c.820dup	p.Ala274GlyfsTer19	p.A274Gfs*19	ENST00000250448	NM_004496.3	274	gcc/gGcc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624257	89624257	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0083955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	79	161	0	ENST00000371953.3:c.31A>T	p.Arg11Ter	p.R11*	ENST00000371953	NM_000314.4	11	Aga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117457	115117457	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0083955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	147	409	0	ENST00000257566.3:c.718-1G>A		p.X240_splice	ENST00000257566	NM_016569.3	240																																																																																
DICER1	23405	MSKCC	GRCh37	14	95582041	95582041	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs754818927		P-0083955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	159	503	0	ENST00000343455.3:c.1870C>T	p.Arg624Ter	p.R624*	ENST00000343455	NM_177438.2	624	Cga/Tga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56167856	56167856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0083955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	90	386	0	ENST00000399503.3:c.1421T>A	p.Ile474Asn	p.I474N	ENST00000399503	NM_005921.1	474	aTt/aAt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110057	115110057	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0083955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	97	413	0	ENST00000257566.3:c.1821C>G	p.Tyr607Ter	p.Y607*	ENST00000257566	NM_016569.3	607	taC/taG																																																																															
AKT1	207	MSKCC	GRCh37	14	105246436	105246436	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0083960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	206	521	0	ENST00000349310.3:c.164T>A	p.Phe55Tyr	p.F55Y	ENST00000349310	NM_001014432.1	55	tTc/tAc																																																																															
FYN	2534	MSKCC	GRCh37	6	112041103	112041103	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	160	479	0	ENST00000368678.4:c.152A>G	p.Asn51Ser	p.N51S	ENST00000368678		51	aAc/aGc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913382		P-0083991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	170	293	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0083991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	105	216	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513240	44513240	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	115	185	0	ENST00000291552.4:c.695G>C	p.Arg232Thr	p.R232T	ENST00000291552	NM_006758.2	232	aGa/aCa																																																																															
ATM	472	MSKCC	GRCh37	11	108117753	108117753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	28	280	0	ENST00000278616.4:c.964G>A	p.Glu322Lys	p.E322K	ENST00000278616	NM_000051.3	322	Gag/Aag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212578349	212578349	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1484791833		P-0083991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	161	264	0	ENST00000342788.4:c.908C>T	p.Ser303Phe	p.S303F	ENST00000342788	NM_005235.2	303	tCt/tTt																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805422	46805422	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	187	374	0	ENST00000290295.7:c.534G>C	p.Trp178Cys	p.W178C	ENST00000290295	NM_006361.5	178	tgG/tgC																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217686	7217686	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0083991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	228	354	0	ENST00000380728.2:c.241G>T	p.Glu81Ter	p.E81*	ENST00000380728		81	Gaa/Taa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65348959	65348959	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0083991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			83	147	272	0	ENST00000342505.4:c.205+1G>A		p.X69_splice	ENST00000342505	NM_002227.2	69																																																																																
CDH1	999	MSKCC	GRCh37	16	68862111	68862112	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0083991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	201	314	0	ENST00000261769.5:c.2202_2203del	p.Arg734SerfsTer13	p.R734Sfs*13	ENST00000261769	NM_004360.3	733	agGAga/agga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118705	115118706	+	missense_variant	Missense_Mutation	DNP	GT	GT	AA			P-0083991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	223	400	0	ENST00000257566.3:c.635_636delinsTT	p.Asn212Ile	p.N212I	ENST00000257566	NM_016569.3	212	aAC/aTT																																																																															
CTR9	9646	MSKCC	GRCh37	11	10773002	10773002	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0083991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	117	199	0	ENST00000361367.2:c.43G>A	p.Glu15Lys	p.E15K	ENST00000361367	NM_014633.3	15	Gag/Aag																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031946	26031946	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs202032296		P-0083991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	228	380	0	ENST00000244661.2:c.343G>T	p.Ala115Ser	p.A115S	ENST00000244661	NM_003537.3	115	Gct/Tct																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417304	139417304	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0083991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	145	295	0	ENST00000277541.6:c.740C>T	p.Pro247Leu	p.P247L	ENST00000277541	NM_017617.3	247	cCa/cTa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099277	157099277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	215	254	0	ENST00000346085.5:c.214G>T	p.Val72Phe	p.V72F	ENST00000346085	NM_020732.3	72	Gtt/Ttt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114229	115114230	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0083991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	198	303	0	ENST00000257566.3:c.987_988del	p.His329GlnfsTer8	p.H329Qfs*8	ENST00000257566	NM_016569.3	329	caCAaa/caaa																																																																															
RET	5979	MSKCC	GRCh37	10	43595941	43595941	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0083991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	153	300	0	ENST00000355710.3:c.108C>A	p.Tyr36Ter	p.Y36*	ENST00000355710	NM_020975.4	36	taC/taA																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605038	46605038	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	92	306	0	ENST00000263734.3:c.1255C>G	p.Gln419Glu	p.Q419E	ENST00000263734	NM_001430.4	419	Cag/Gag																																																																															
ARAF	369	MSKCC	GRCh37	X	47428203	47428203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	97	313	0	ENST00000377045.4:c.1163C>G	p.Ser388Cys	p.S388C	ENST00000377045	NM_001654.4	388	tCc/tGc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115266549	115266549	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	150	311	0	ENST00000438362.2:c.1966C>G	p.Pro656Ala	p.P656A	ENST00000438362	NM_001242891.1	656	Cca/Gca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218865	36218865	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs370466290		P-0083991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	204	347	0	ENST00000222270.7:c.4476G>T	p.Gln1492His	p.Q1492H	ENST00000222270	NM_014727.1	1492	caG/caT																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206658359	206658359	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	176	341	0	ENST00000367120.3:c.1453G>C	p.Glu485Gln	p.E485Q	ENST00000367120	NM_014002.3	485	Gag/Cag																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67201520	67201520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	267	449	0	ENST00000312629.5:c.961G>A	p.Asp321Asn	p.D321N	ENST00000312629	NM_003952.2	321	Gat/Aat																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202995	16202995	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200777699		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			748	78	453	0	ENST00000375759.3:c.703C>T	p.Arg235Trp	p.R235W	ENST00000375759	NM_015001.2	235	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259480	16259480	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			789	55	595	1	ENST00000375759.3:c.6750del	p.Ala2251GlnfsTer102	p.A2251Qfs*102	ENST00000375759	NM_015001.2	2249	Ccc/cc																																																																															
IL10	3586	MSKCC	GRCh37	1	206944260	206944260	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746523858		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	44	434	0	ENST00000423557.1:c.370C>T	p.Arg124Trp	p.R124W	ENST00000423557	NM_000572.2	124	Cgg/Tgg																																																																															
MPL	4352	MSKCC	GRCh37	1	43814553	43814553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	129	481	0	ENST00000372470.3:c.1348G>A	p.Glu450Lys	p.E450K	ENST00000372470	NM_005373.2	450	Gag/Aag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306941	65306941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	126	405	0	ENST00000342505.4:c.2636G>A	p.Arg879His	p.R879H	ENST00000342505	NM_002227.2	879	cGt/cAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912189	114912189	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867720073		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	150	305	0	ENST00000543371.1:c.1259G>A	p.Arg420Gln	p.R420Q	ENST00000543371	NM_001198531.1	420	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	190	357	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	81	415	1	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	239	512	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434965	110434965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	154	571	0	ENST00000375856.3:c.3436C>T	p.Arg1146Cys	p.R1146C	ENST00000375856	NM_003749.2	1146	Cgc/Tgc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73335809	73335809	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144010862		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	106	389	0	ENST00000377767.4:c.2486G>A	p.Arg829His	p.R829H	ENST00000377767	NM_014953.3	829	cGt/cAt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2213961	2213961	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756584430		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	43	533	2	ENST00000326181.6:c.45del	p.Ser17AlafsTer111	p.S17Afs*111	ENST00000326181	NM_032271.2	14	Ggg/gg																																																																															
CDH1	999	MSKCC	GRCh37	16	68842633	68842633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	47	450	0	ENST00000261769.5:c.569A>G	p.Tyr190Cys	p.Y190C	ENST00000261769	NM_004360.3	190	tAc/tGc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37884217	37884217	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769940977		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	145	533	0	ENST00000269571.5:c.3688C>T	p.Arg1230Trp	p.R1230W	ENST00000269571		1230	Cgg/Tgg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40468879	40468879	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1293678815		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	41	392	0	ENST00000264657.5:c.2185C>T	p.Arg729Cys	p.R729C	ENST00000264657	NM_139276.2	729	Cgc/Tgc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	187	609	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs758630849		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	69	379	0	ENST00000305921.3:c.1349del	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740698	58740698	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	56	424	0	ENST00000305921.3:c.1606del	p.Arg536GlyfsTer3	p.R536Gfs*3	ENST00000305921	NM_003620.3	535	Aaa/aa																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61323102	61323102	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140650845		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	181	533	0	ENST00000283752.5:c.962G>A	p.Arg321His	p.R321H	ENST00000283752	NM_006919.2	321	cGc/cAc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945696	17945696	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3213409		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	56	511	0	ENST00000458235.1:c.2164G>A	p.Val722Ile	p.V722I	ENST00000458235	NM_000215.3	722	Gtc/Atc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212149	36212149	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	53	255	0	ENST00000222270.7:c.1904del	p.Pro635LeufsTer25	p.P635Lfs*25	ENST00000222270	NM_014727.1	634	Ccc/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214887	36214887	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1303371875		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	139	435	0	ENST00000222270.7:c.3313C>T	p.Arg1105Cys	p.R1105C	ENST00000222270	NM_014727.1	1105	Cgt/Tgt																																																																															
CIC	23152	MSKCC	GRCh37	19	42799098	42799098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	121	422	0	ENST00000575354.2:c.4586del	p.Pro1529LeufsTer91	p.P1529Lfs*91	ENST00000575354	NM_015125.3	1528	Ccc/cc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424760	47424760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	172	457	1	ENST00000404338.3:c.2834del	p.Lys945ArgfsTer3	p.K945Rfs*3	ENST00000404338	NM_004491.4	943	gAa/ga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231449	5231449	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376058028		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	174	461	0	ENST00000357368.4:c.2027C>T	p.Pro676Leu	p.P676L	ENST00000357368	NM_002850.3	676	cCg/cTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231588	5231588	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772048652		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	71	260	0	ENST00000357368.4:c.1888G>A	p.Val630Met	p.V630M	ENST00000357368	NM_002850.3	630	Gtg/Atg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244191	5244191	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1237664443		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	147	525	0	ENST00000357368.4:c.1291C>T	p.Arg431Trp	p.R431W	ENST00000357368	NM_002850.3	431	Cgg/Tgg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52724339	52724339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs969720045		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	149	492	0	ENST00000322088.6:c.1471G>A	p.Gly491Arg	p.G491R	ENST00000322088	NM_014225.5	491	Gga/Aga																																																																															
CASP8	841	MSKCC	GRCh37	2	202139625	202139626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	35	379	0	ENST00000358485.4:c.790dup	p.Val264GlyfsTer13	p.V264Gfs*13	ENST00000358485	NM_001080125.1	262	-/G																																																																															
IDH1	3417	MSKCC	GRCh37	2	209104655	209104655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	94	431	0	ENST00000345146.2:c.923C>T	p.Ala308Val	p.A308V	ENST00000345146	NM_005896.2	308	gCc/gTc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225339038	225339038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	119	287	0	ENST00000264414.4:c.2231G>A	p.Arg744His	p.R744H	ENST00000264414	NM_003590.4	744	cGt/cAt																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605218	46605218	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1373712541		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	30	393	0	ENST00000263734.3:c.1435T>A	p.Cys479Ser	p.C479S	ENST00000263734	NM_001430.4	479	Tgc/Agc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022443	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-	rs750318549		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	168	566	0	ENST00000375687.4:c.1933_1934del	p.Gly645TrpfsTer12	p.G645Wfs*12	ENST00000375687	NM_015338.5	643	GGg/g																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41818336	41818336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	52	556	1	ENST00000373198.4:c.38T>C	p.Leu13Pro	p.L13P	ENST00000373198	NM_133170.3	13	cTg/cCg																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961561	54961561	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779597046		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	86	423	0	ENST00000312783.6:c.71G>A	p.Arg24His	p.R24H	ENST00000312783	NM_198436.1	24	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	31	303	0	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185183632	185183632	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746343770		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	110	327	0	ENST00000265026.3:c.1486C>T	p.Arg496Trp	p.R496W	ENST00000265026	NM_004721.4	496	Cgg/Tgg																																																																															
BCL6	604	MSKCC	GRCh37	3	187447715	187447715	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778509539		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			767	66	574	0	ENST00000232014.4:c.478C>T	p.Arg160Cys	p.R160C	ENST00000232014	NM_001130845.1	160	Cgt/Tgt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643780	52643780	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	135	385	0	ENST00000394830.3:c.2116A>G	p.Met706Val	p.M706V	ENST00000394830	NM_018313.4	706	Atg/Gtg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	184	478	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs750808726		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	41	624	1	ENST00000261937.6:c.1267dup	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111736	56111737	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	83	342	0	ENST00000399503.3:c.340dup	p.His114ProfsTer50	p.H114Pfs*50	ENST00000399503	NM_005921.1	112	-/C																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	178	242	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553707	106553707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753053806		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	69	475	0	ENST00000369096.4:c.1672G>A	p.Gly558Ser	p.G558S	ENST00000369096	NM_001198.3	558	Ggc/Agc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910615	29910615	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	67	618	0	ENST00000376809.5:c.155T>C	p.Val52Ala	p.V52A	ENST00000376809	NM_002116.7	52	gTg/gCg																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36651972	36651972	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373450720		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			705	65	537	0	ENST00000244741.5:c.94C>T	p.Arg32Cys	p.R32C	ENST00000244741	NM_000389.4	32	Cgc/Tgc																																																																															
POT1	25913	MSKCC	GRCh37	7	124482943	124482943	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372317646		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	64	288	0	ENST00000357628.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000357628	NM_015450.2	361	Cgc/Tgc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	170	450	3	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874149	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	35	397	1	ENST00000262189.6:c.8389_8390del	p.Lys2797GlyfsTer11	p.K2797Gfs*11	ENST00000262189	NM_170606.2	2797	AAg/g																																																																															
CARD11	84433	MSKCC	GRCh37	7	2954952	2954952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	175	607	1	ENST00000396946.4:c.2758C>T	p.Arg920Cys	p.R920C	ENST00000396946	NM_032415.4	920	Cgc/Tgc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2958127	2958127	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs769192567		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	126	419	0	ENST00000396946.4:c.2605C>T	p.Arg869Trp	p.R869W	ENST00000396946	NM_032415.4	869	Cgg/Tgg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968322	2968323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762770988		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	40	399	3	ENST00000396946.4:c.1663dup	p.Arg555ProfsTer38	p.R555Pfs*38	ENST00000396946	NM_032415.4	555	cgg/cCgg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455075	50455075	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	113	331	0	ENST00000331340.3:c.622C>T	p.Arg208Ter	p.R208*	ENST00000331340	NM_006060.4	208	Cga/Tga																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467693	50467693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	113	475	0	ENST00000331340.3:c.928G>T	p.Val310Leu	p.V310L	ENST00000331340	NM_006060.4	310	Gtg/Ttg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55220320	55220320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	103	332	0	ENST00000275493.2:c.710C>T	p.Ala237Val	p.A237V	ENST00000275493	NM_005228.3	237	gCt/gTt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371995	55371995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	42	452	0	ENST00000297316.4:c.685G>A	p.Gly229Ser	p.G229S	ENST00000297316	NM_022454.3	229	Ggc/Agc																																																																															
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	39	331	1	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2056778	2056778	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs865840815		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	154	431	1	ENST00000349721.2:c.1280G>A	p.Arg427His	p.R427H	ENST00000349721	NM_003070.3	427	cGc/cAc																																																																															
SYK	6850	MSKCC	GRCh37	9	93606343	93606343	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200078199		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	131	568	0	ENST00000375746.1:c.163G>A	p.Val55Met	p.V55M	ENST00000375746	NM_001174167.1	55	Gtg/Atg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53241079	53241079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782110533		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	42	402	2	ENST00000375401.3:c.1132C>T	p.Arg378Trp	p.R378W	ENST00000375401	NM_004187.3	378	Cgg/Tgg																																																																															
AR	367	MSKCC	GRCh37	X	66942759	66942760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	64	345	0	ENST00000374690.3:c.2546dup	p.Asn849LysfsTer32	p.N849Kfs*32	ENST00000374690	NM_000044.3	847	aga/agAa																																																																															
MED12	9968	MSKCC	GRCh37	X	70349689	70349689	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs979229015		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	109	467	0	ENST00000374080.3:c.3851G>A	p.Arg1284His	p.R1284H	ENST00000374080		1284	cGc/cAc																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230472864	230472865	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	134	417	0	ENST00000525115.1:c.857_858del	p.Phe286Ter	p.F286*	ENST00000525115		286	tTT/t																																																																															
CTR9	9646	MSKCC	GRCh37	11	10800527	10800527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	125	337	0	ENST00000361367.2:c.3397G>A	p.Glu1133Lys	p.E1133K	ENST00000361367	NM_014633.3	1133	Gaa/Aaa																																																																															
KLF5	688	MSKCC	GRCh37	13	73636269	73636271	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	191	526	0	ENST00000377687.4:c.537_539del	p.Pro180del	p.P180del	ENST00000377687	NM_001730.3	178	CCT/-																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778391	3778392	+	missense_variant	Missense_Mutation	DNP	GG	GG	CC			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	131	650	1	ENST00000262367.5:c.6656_6657inv	p.Ala2219Gly	p.A2219G	ENST00000262367	NM_004380.2	2219	gCC/gGG																																																																															
CDH1	999	MSKCC	GRCh37	16	68844203	68844205	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	119	389	0	ENST00000261769.5:c.794_796del	p.Glu265del	p.E265del	ENST00000261769	NM_004360.3	264	cAGGag/cag																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805874	46805874	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	174	502	0	ENST00000290295.7:c.82G>T	p.Val28Phe	p.V28F	ENST00000290295	NM_006361.5	28	Gtc/Ttc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349691	15349691	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	37	556	0	ENST00000263377.2:c.3883C>G	p.Gln1295Glu	p.Q1295E	ENST00000263377	NM_058243.2	1295	Cag/Gag																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503685	47503685	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11548676		P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	147	532	0	ENST00000404338.3:c.4240G>A	p.Ala1414Thr	p.A1414T	ENST00000404338	NM_004491.4	1414	Gcc/Acc																																																																															
CASP8	841	MSKCC	GRCh37	2	202149868	202149868	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	37	535	0	ENST00000358485.4:c.1309C>T	p.Gln437Ter	p.Q437*	ENST00000358485	NM_001080125.1	437	Caa/Taa																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62309623	62309623	+	missense_variant,splice_region_variant,NMD_transcript_variant	Missense_Mutation	SNP	A	A	G			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	148	482	0	ENST00000482936.1:c.961A>G	p.Ile321Val	p.I321V	ENST00000482936		321	Atc/Gtc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561082	9561082	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	44	443	0	ENST00000353224.5:c.700T>A	p.Phe234Ile	p.F234I	ENST00000353224	NM_177990.2	234	Ttc/Atc																																																																															
BCL6	604	MSKCC	GRCh37	3	187442814	187442814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	141	523	0	ENST00000232014.4:c.1892C>A	p.Pro631His	p.P631H	ENST00000232014	NM_001130845.1	631	cCc/cAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275723	41275723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			787	62	418	0	ENST00000349496.5:c.1618C>T	p.Leu540Phe	p.L540F	ENST00000349496	NM_001904.3	540	Ctt/Ttt																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799892	72799892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	119	372	0	ENST00000325599.8:c.1277C>T	p.Ala426Val	p.A426V	ENST00000325599	NM_018130.2	426	gCa/gTa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807865	1807865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	248	832	0	ENST00000260795.2:c.1924G>A	p.Val642Met	p.V642M	ENST00000260795		642	Gtg/Atg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808951	1808951	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	56	540	0	ENST00000260795.2:c.2383C>G	p.Pro795Ala	p.P795A	ENST00000260795		795	Ccc/Gcc																																																																															
KDR	3791	MSKCC	GRCh37	4	55974018	55974018	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	122	417	0	ENST00000263923.4:c.1298A>T	p.Asp433Val	p.D433V	ENST00000263923	NM_002253.2	433	gAt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112164603	112164604	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	85	277	0	ENST00000257430.4:c.1682dup	p.Thr562AspfsTer19	p.T562Dfs*19	ENST00000257430	NM_000038.5	559	-/A																																																																															
TERT	7015	MSKCC	GRCh37	5	1295377	1295377	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	136	512	0				ENST00000310581	NM_198253.2																																																																																	
MSH3	4437	MSKCC	GRCh37	5	79961012	79961012	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	109	380	0	ENST00000265081.6:c.409T>A	p.Leu137Met	p.L137M	ENST00000265081	NM_002439.4	137	Ttg/Atg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921500	39921501	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0083995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	161	437	0	ENST00000378444.4:c.4319dup	p.Gln1441SerfsTer20	p.Q1441Sfs*20	ENST00000378444	NM_001123385.1	1440	cct/ccCt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11217302	11217302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	29	433	0	ENST00000361445.4:c.4376C>A	p.Ala1459Asp	p.A1459D	ENST00000361445	NM_004958.3	1459	gCc/gAc																																																																															
AKT2	208	MSKCC	GRCh37	19	40762959	40762959	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs387906659		P-0083997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	37	460	0	ENST00000392038.2:c.49G>A	p.Glu17Lys	p.E17K	ENST00000392038	NM_001626.4	17	Gaa/Aaa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18491450	18491450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	138	268	0	ENST00000266497.5:c.1363G>A	p.Glu455Lys	p.E455K	ENST00000266497		455	Gaa/Aaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151856028	151856028	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144222590		P-0083997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			961	54	436	0	ENST00000262189.6:c.11590C>T	p.Arg3864Cys	p.R3864C	ENST00000262189	NM_170606.2	3864	Cgc/Tgc																																																																															
JUN	3725	MSKCC	GRCh37	1	59248740	59248740	+	start_lost	Translation_Start_Site	SNP	C	C	A			P-0083997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	131	409	0	ENST00000371222.2:c.3G>T	p.Met1?	p.M1?	ENST00000371222	NM_002228.3	1	atG/atT																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0083998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	122	390	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149514363	149514363	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs2229560		P-0083998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	105	564	0	ENST00000261799.4:c.581T>C	p.Ile194Thr	p.I194T	ENST00000261799	NM_002609.3	194	aTt/aCt																																																																															
APC	324	MSKCC	GRCh37	5	112175735	112175750	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCCAGATGCTGATA	CTTCCAGATGCTGATA	-			P-0083998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	129	585	0	ENST00000257430.4:c.4447_4462del	p.Pro1483TyrfsTer19	p.P1483Yfs*19	ENST00000257430	NM_000038.5	1482	CTTCCAGATGCTGATAct/ct																																																																															
RB1	5925	MSKCC	GRCh37	13	48955490	48955490	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0083998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	87	290	0	ENST00000267163.4:c.1606A>T	p.Ile536Phe	p.I536F	ENST00000267163	NM_000321.2	536	Atc/Ttc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028670	12028670	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	116	401	0	ENST00000353533.5:c.873G>C	p.Trp291Cys	p.W291C	ENST00000353533	NM_003010.3	291	tgG/tgC																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482399	56482399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	153	488	0	ENST00000267101.3:c.947G>A	p.Gly316Glu	p.G316E	ENST00000267101	NM_001982.3	316	gGg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577095	7577096	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0083998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	294	529	0	ENST00000269305.4:c.841_842dup	p.Asp281GlufsTer65	p.D281Efs*65	ENST00000269305	NM_001126112.2	281	gac/gaGAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0079085-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			305	174	466	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249014	55249015	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCCCCACGTGTG			P-0079085-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			617	275	593	0	ENST00000275493.2:c.2315_2326dup	p.Pro772_Cys775dup	p.P772_C775dup	ENST00000275493	NM_005228.3	772	aac/aaCCCCCACGTGTGc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913558	32913559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1265028174		P-0083600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	63	597	0	ENST00000380152.3:c.5073dup	p.Trp1692MetfsTer3	p.W1692Mfs*3	ENST00000380152		1689	gca/gcAa																																																																															
MGA	23269	MSKCC	GRCh37	15	42046766	42046766	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0083600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	101	559	1	ENST00000219905.7:c.7139+1G>A		p.X2380_splice	ENST00000219905	NM_001164273.1	2380																																																																																
MET	4233	MSKCC	GRCh37	7	116411928	116411928	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0083600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			961	110	812	0	ENST00000397752.3:c.2913C>A	p.Tyr971Ter	p.Y971*	ENST00000397752	NM_000245.2	971	taC/taA																																																																															
CD79B	974	MSKCC	GRCh37	17	62007239	62007239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			746	50	649	0	ENST00000392795.3:c.443C>T	p.Thr148Ile	p.T148I	ENST00000392795	NM_001039933.1	148	aCc/aTc																																																																															
EP300	2033	MSKCC	GRCh37	22	41568562	41568563	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAGGGTGATTTCTGGCCCAATGTTCTG			P-0083600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			722	61	604	0	ENST00000263253.7:c.4515_4541dup	p.Gly1506_Glu1514dup	p.G1506_E1514dup	ENST00000263253	NM_001429.3	1506	-/GAGGGTGATTTCTGGCCCAATGTTCTG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0083897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	120	638	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138426123	138426123	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1217537873		P-0083897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	34	355	2	ENST00000289153.2:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000289153	NM_006219.2	470	Gaa/Aaa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351098	89351098	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140370885		P-0083897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	67	550	3	ENST00000301030.4:c.1852G>A	p.Ala618Thr	p.A618T	ENST00000301030	NM_001256183.1	618	Gct/Act																																																																															
APC	324	MSKCC	GRCh37	5	112173992	112173992	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1114167559		P-0083897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	70	533	0	ENST00000257430.4:c.2701C>T	p.Gln901Ter	p.Q901*	ENST00000257430	NM_000038.5	901	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175193	112175193	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	46	571	0	ENST00000257430.4:c.3904del	p.Leu1302CysfsTer3	p.L1302Cfs*3	ENST00000257430	NM_000038.5	1301	aCc/ac																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026115	71026115	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs797045584		P-0083897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	55	378	1	ENST00000318789.4:c.1507C>T	p.Arg503Ter	p.R503*	ENST00000318789	NM_032682.5	503	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114917819	114917819	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0083897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	58	365	0	ENST00000543371.1:c.1309G>T	p.Glu437Ter	p.E437*	ENST00000543371	NM_001198531.1	437	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0083899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	130	440	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0083899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			67	32	251	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0083899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	260	526	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212578349	212578349	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1484791833		P-0083899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	105	376	0	ENST00000342788.4:c.908C>T	p.Ser303Phe	p.S303F	ENST00000342788	NM_005235.2	303	tCt/tTt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163282	32163282	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs577160458		P-0083899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	292	516	0	ENST00000375023.3:c.5944C>G	p.Gln1982Glu	p.Q1982E	ENST00000375023	NM_004557.3	1982	Caa/Gaa																																																																															
EP300	2033	MSKCC	GRCh37	22	41513289	41513289	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	181	493	0	ENST00000263253.7:c.193C>T	p.Gln65Ter	p.Q65*	ENST00000263253	NM_001429.3	65	Cag/Tag																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067371	37067371	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs989382971		P-0083899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	111	492	0	ENST00000231790.2:c.1282G>A	p.Asp428Asn	p.D428N	ENST00000231790	NM_000249.3	428	Gat/Aat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27058015	27058015	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	285	565	0	ENST00000324856.7:c.1723C>T	p.Gln575Ter	p.Q575*	ENST00000324856	NM_006015.4	575	Cag/Tag																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551879	150551879	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1267652025		P-0083899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	241	514	1	ENST00000369026.2:c.128C>T	p.Ser43Leu	p.S43L	ENST00000369026	NM_021960.4	43	tCg/tTg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56864542	56864542	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	211	435	0	ENST00000308159.5:c.1030C>T	p.Gln344Ter	p.Q344*	ENST00000308159	NM_014669.4	344	Cag/Tag																																																																															
PARP1	142	MSKCC	GRCh37	1	226552749	226552749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	199	598	0	ENST00000366794.5:c.2612G>T	p.Gly871Val	p.G871V	ENST00000366794	NM_001618.3	871	gGg/gTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163899	47163918	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CTGACTTCTTATGCAGCATG	CTGACTTCTTATGCAGCATG	-			P-0083899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	230	531	0	ENST00000409792.3:c.2208_2227del	p.Cys736Ter	p.C736*	ENST00000409792	NM_014159.6	736	tgCATGCTGCATAAGAAGTCAGaa/tgaa																																																																															
KDR	3791	MSKCC	GRCh37	4	55946116	55946116	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs747831962		P-0083899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	129	439	0	ENST00000263923.4:c.4063C>G	p.Pro1355Ala	p.P1355A	ENST00000263923	NM_002253.2	1355	Cct/Gct																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46608758	46608758	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1021730994		P-0083899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	184	476	0	ENST00000263734.3:c.2069G>A	p.Arg690Gln	p.R690Q	ENST00000263734	NM_001430.4	690	cGa/cAa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16012124	16012124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	105	421	0	ENST00000268712.3:c.2158G>A	p.Glu720Lys	p.E720K	ENST00000268712	NM_006311.3	720	Gaa/Aaa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14015951	14015951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	141	395	0	ENST00000311895.7:c.271G>A	p.Glu91Lys	p.E91K	ENST00000311895	NM_005236.2	91	Gaa/Aaa																																																																															
PARP1	142	MSKCC	GRCh37	1	226552714	226552714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	204	584	0	ENST00000366794.5:c.2647G>A	p.Glu883Lys	p.E883K	ENST00000366794	NM_001618.3	883	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0083927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	239	544	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112157650	112157650	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs1060503333		P-0083927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	71	384	0	ENST00000257430.4:c.1370C>G	p.Ser457Ter	p.S457*	ENST00000257430	NM_000038.5	457	tCa/tGa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660045		P-0083927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	233	543	0	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt																																																																															
TET2	54790	MSKCC	GRCh37	4	106164733	106164733	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1373336171		P-0083927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	178	387	0	ENST00000380013.4:c.3601C>T	p.Arg1201Cys	p.R1201C	ENST00000380013	NM_001127208.2	1201	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579447	7579447	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0083927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	635	708	1	ENST00000269305.4:c.240del	p.Thr81HisfsTer42	p.T81Hfs*42	ENST00000269305	NM_001126112.2	80	ccT/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0083927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	107	349	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69103967	69103967	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0083927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	138	462	0	ENST00000288368.4:c.4357T>A	p.Leu1453Met	p.L1453M	ENST00000288368	NM_024870.2	1453	Ttg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0007921-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			348	129	406	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964076	28964076	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007921-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			453	77	513	0	ENST00000282397.4:c.1826T>A	p.Met609Lys	p.M609K	ENST00000282397	NM_002019.4	609	aTg/aAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0083822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	9	545	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061313	38061313	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1204900727		P-0083822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	414	573	1	ENST00000250448.2:c.676G>A	p.Asp226Asn	p.D226N	ENST00000250448	NM_004496.3	226	Gac/Aac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591894	48591894	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	35	581	0	ENST00000342988.3:c.1057T>C	p.Tyr353His	p.Y353H	ENST00000342988	NM_005359.5	353	Tac/Cac																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870779	12870779	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0083822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	172	446	0	ENST00000228872.4:c.8del	p.Asn3ThrfsTer39	p.N3Tfs*39	ENST00000228872	NM_004064.3	2	tcA/tc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0083824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	116	411	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087390	27087396	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCTCT	GAGCTCT	-			P-0083824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	110	499	0	ENST00000324856.7:c.1967_1973del	p.Ala656ValfsTer4	p.A656Vfs*4	ENST00000324856	NM_006015.4	655	gGAGCTCTg/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0083843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	104	135	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0083843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	171	413	0	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178937422	178937422	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	65	75	0	ENST00000263967.3:c.1810T>C	p.Cys604Arg	p.C604R	ENST00000263967	NM_006218.2	604	Tgt/Cgt																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264425	30264426	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCT	rs1313089631		P-0083843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	79	357	1	ENST00000322652.5:c.175_177dup	p.Ser59dup	p.S59dup	ENST00000322652	NM_015355.2	59	gcc/gCCTcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0083845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	27	138	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0083845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	106	323	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0083845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	31	429	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP63	8626	MSKCC	GRCh37	3	189586497	189586497	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199807776		P-0083845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	103	332	0	ENST00000264731.3:c.1121C>T	p.Thr374Met	p.T374M	ENST00000264731	NM_003722.4	374	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0083845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	142	225	2	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945076	31945076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			751	106	401	1	ENST00000340398.3:c.25C>T	p.Arg9Cys	p.R9C	ENST00000340398	NM_001013699.2	9	Cgt/Tgt																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46531828	46531828	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0083845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	44	236	0	ENST00000262741.5:c.519T>A	p.Asn173Lys	p.N173K	ENST00000262741	NM_003629.3	173	aaT/aaA																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026702	48026702	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0083845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	96	352	0	ENST00000234420.5:c.1580T>G	p.Leu527Arg	p.L527R	ENST00000234420	NM_000179.2	527	cTg/cGg																																																																															
APC	324	MSKCC	GRCh37	5	112173677	112173678	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0083845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	100	308	0	ENST00000257430.4:c.2387_2388del	p.Tyr796TrpfsTer2	p.Y796Wfs*2	ENST00000257430	NM_000038.5	796	TAt/t																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49415647	49415648	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0083845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	21	303	0	ENST00000301067.7:c.16529_16530del	p.Tyr5510Ter	p.Y5510*	ENST00000301067	NM_003482.3	5510	tAT/t																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265700	10265700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	90	323	1	ENST00000340748.4:c.1477C>T	p.Pro493Ser	p.P493S	ENST00000340748		493	Ccc/Tcc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0083857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	61	241	3	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs267605076		P-0083857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	219	355	2	ENST00000269305.4:c.672G>T	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaT																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0083857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	178	342	5	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588172	69588172	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs550329316		P-0083857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	171	380	2	ENST00000168712.1:c.526G>A	p.Gly176Ser	p.G176S	ENST00000168712	NM_002007.2	176	Ggc/Agc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048162	180048162	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773021479		P-0083857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	97	423	1	ENST00000261937.6:c.2111C>T	p.Ala704Val	p.A704V	ENST00000261937	NM_182925.4	704	gCg/gTg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40476762	40476762	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759053963		P-0083857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	279	365	1	ENST00000264657.5:c.1567G>A	p.Glu523Lys	p.E523K	ENST00000264657	NM_139276.2	523	Gag/Aag																																																																															
AR	367	MSKCC	GRCh37	X	66765425	66765426	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			P-0083857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	130	198	3	ENST00000374690.3:c.443_445dup	p.Gln148dup	p.Q148dup	ENST00000374690	NM_000044.3	148	ccg/ccGCAg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935509	13935509	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	57	343	2	ENST00000405192.2:c.1347C>A	p.Asn449Lys	p.N449K	ENST00000405192	NM_001163147.1	449	aaC/aaA																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0080928-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			397	70	384	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041652	47041653	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0080928-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			450	65	457	0	ENST00000329236.7:c.1644_1645del	p.His548GlnfsTer46	p.H548Qfs*46	ENST00000329236	NM_001204466.1	548	cAT/c																																																																															
GATA3	2625	MSKCC	GRCh37	10	8105995	8105995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080928-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			510	27	438	0	ENST00000346208.3:c.815C>T	p.Pro272Leu	p.P272L	ENST00000346208		272	cCa/cTa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984022	2984022	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs753614569		P-0080928-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			392	60	381	0	ENST00000396946.4:c.508C>A	p.Arg170Ser	p.R170S	ENST00000396946	NM_032415.4	170	Cgc/Agc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87359960	87359960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080928-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			422	72	325	0	ENST00000277120.3:c.1268C>A	p.Thr423Asn	p.T423N	ENST00000277120		423	aCt/aAt																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690028	33690028	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080928-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			640	51	441	0	ENST00000308377.4:c.799C>A	p.Pro267Thr	p.P267T	ENST00000308377	NM_152270.3	267	Cct/Act																																																																															
MST1R	4486	MSKCC	GRCh37	3	49935984	49935984	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080928-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			390	63	423	0	ENST00000296474.3:c.1686G>C	p.Trp562Cys	p.W562C	ENST00000296474	NM_002447.2	562	tgG/tgC																																																																															
TEK	7010	MSKCC	GRCh37	9	27206659	27206659	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080928-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			445	67	364	0	ENST00000380036.4:c.2444T>C	p.Ile815Thr	p.I815T	ENST00000380036	NM_000459.3	815	aTt/aCt																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858170	152858170	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080928-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			377	58	427	0	ENST00000406277.2:c.445del	p.Ser149ProfsTer6	p.S149Pfs*6	ENST00000406277	NM_152274.4	149	Tcc/cc																																																																															
AKT1	207	MSKCC	GRCh37	14	105243048	105243048	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519804		P-0081761-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			138	16	493	0	ENST00000349310.3:c.235C>A	p.Gln79Lys	p.Q79K	ENST00000349310	NM_001014432.1	79	Cag/Aag																																																																															
NF2	4771	MSKCC	GRCh37	22	30051626	30051626	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081761-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			156	66	345	0	ENST00000338641.4:c.560G>T	p.Arg187Ile	p.R187I	ENST00000338641	NM_000268.3	187	aGa/aTa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974759	15974759	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081761-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			106	73	440	0	ENST00000268712.3:c.4116G>C	p.Gln1372His	p.Q1372H	ENST00000268712	NM_006311.3	1372	caG/caC																																																																															
ATRX	546	MSKCC	GRCh37	X	76777761	76777761	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081761-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			61	26	227	0	ENST00000373344.5:c.6955A>G	p.Met2319Val	p.M2319V	ENST00000373344	NM_000489.3	2319	Atg/Gtg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23634408	23634408	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081761-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			184	22	403	0	ENST00000261584.4:c.2878C>A	p.Leu960Ile	p.L960I	ENST00000261584	NM_024675.3	960	Cta/Ata																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50484138	50484138	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081761-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			201	24	494	0	ENST00000394963.4:c.988G>C	p.Asp330His	p.D330H	ENST00000394963	NM_003076.4	330	Gac/Cac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817763	3817763	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081761-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			293	42	472	0	ENST00000262367.5:c.3208A>G	p.Thr1070Ala	p.T1070A	ENST00000262367	NM_004380.2	1070	Aca/Gca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0081796-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			161	9	291	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231740	66231740	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081796-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			126	11	366	0	ENST00000273854.3:c.1960C>A	p.His654Asn	p.H654N	ENST00000273854	NM_004439.5	654	Cat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0082473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	58	278	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0082473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	26	448	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
CDH1	999	MSKCC	GRCh37	16	68842468	68842468	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0082473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	62	603	0	ENST00000261769.5:c.529C>T	p.Gln177Ter	p.Q177*	ENST00000261769	NM_004360.3	177	Cag/Tag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984696	11984702	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAGTC	TTGAGTC	-			P-0082473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	16	296	0	ENST00000353533.5:c.242_248del	p.Ile81AsnfsTer5	p.I81Nfs*5	ENST00000353533	NM_003010.3	81	aTTGAGTCa/aa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2979498	2979498	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	345	416	0	ENST00000396946.4:c.749C>A	p.Ser250Tyr	p.S250Y	ENST00000396946	NM_032415.4	250	tCt/tAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577519	7577527	+	inframe_deletion	In_Frame_Del	DEL	GATGGTGAG	GATGGTGAG	-			P-0083763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	528	414	0	ENST00000269305.4:c.754_762del	p.Leu252_Ile254del	p.L252_I254del	ENST00000269305	NM_001126112.2	252	CTCACCATC/-																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27093057	27093062	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTAGT	GGTAGT	-			P-0083763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	245	349	0	ENST00000324856.7:c.2988+1_2988+6del		p.X996_splice	ENST00000324856	NM_006015.4	996																																																																																
SETD2	29072	MSKCC	GRCh37	3	47165223	47165223	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	491	382	0	ENST00000409792.3:c.903C>G	p.Ser301Arg	p.S301R	ENST00000409792	NM_014159.6	301	agC/agG																																																																															
APLNR	187	MSKCC	GRCh37	11	57003803	57003803	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	C			P-0083763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	132	531	0	ENST00000257254.3:c.676C>G	p.Gln226Glu	p.Q226E	ENST00000257254		226	Caa/Gaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261649	16261649	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	147	543	0	ENST00000375759.3:c.8914G>C	p.Val2972Leu	p.V2972L	ENST00000375759	NM_015001.2	2972	Gtc/Ctc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171648	36171648	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	179	431	0	ENST00000300305.3:c.917G>C	p.Arg306Pro	p.R306P	ENST00000300305		306	cGt/cCt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740530	145740540	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCACCAGACAG	TCACCAGACAG	-			P-0083763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1781	303	634	0	ENST00000428558.2:c.1477_1483+4del		p.X493_splice	ENST00000428558	NM_004260.3	493																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0083770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	50	452	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034475	47034475	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0083770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	64	179	0	ENST00000329236.7:c.329G>A	p.Trp110Ter	p.W110*	ENST00000329236	NM_001204466.1	110	tGg/tAg																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30253759	30253759	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1388146136		P-0083770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	62	408	0	ENST00000307677.4:c.695G>A	p.Arg232Gln	p.R232Q	ENST00000307677	NM_138578.1	232	cGg/cAg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16235973	16235973	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	39	395	0	ENST00000375759.3:c.1039A>G	p.Thr347Ala	p.T347A	ENST00000375759	NM_015001.2	347	Aca/Gca																																																																															
MGA	23269	MSKCC	GRCh37	15	41989087	41989087	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	46	470	0	ENST00000219905.7:c.1879C>T	p.Arg627Ter	p.R627*	ENST00000219905	NM_001164273.1	627	Cga/Tga																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519963		P-0083771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	27	266	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0083771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	19	316	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646530	23646530	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs146434474		P-0083771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	50	450	0	ENST00000261584.4:c.1337A>T	p.Asp446Val	p.D446V	ENST00000261584	NM_024675.3	446	gAt/gTt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149441081	149441081	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	24	395	0	ENST00000286301.3:c.1831C>A	p.Leu611Met	p.L611M	ENST00000286301	NM_005211.3	611	Ctg/Atg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864321	57864321	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			776	80	634	0	ENST00000228682.2:c.1798G>C	p.Gly600Arg	p.G600R	ENST00000228682	NM_005269.2	600	Ggt/Cgt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88670394	88670394	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0083771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	37	387	0	ENST00000360948.2:c.1292G>T	p.Gly431Val	p.G431V	ENST00000360948	NM_001012338.2	431	gGg/gTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462080	120462080	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0083771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	74	508	0	ENST00000256646.2:c.5636T>A	p.Met1879Lys	p.M1879K	ENST00000256646	NM_024408.3	1879	aTg/aAg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485798	57485798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			708	61	453	0	ENST00000371085.3:c.1099G>T	p.Val367Leu	p.V367L	ENST00000371085	NM_000516.4	367	Gtg/Ttg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29068963	29068963	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	60	402	0	ENST00000282397.4:c.18C>A	p.Asp6Glu	p.D6E	ENST00000282397	NM_002019.4	6	gaC/gaA																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783972	50783972	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0083771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	30	469	0	ENST00000398568.2:c.363A>T	p.Lys121Asn	p.K121N	ENST00000398568	NM_001042412.1	121	aaA/aaT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006804	47006804	+	5_prime_UTR_variant	5'UTR	SNP	G	G	T			P-0083771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	57	486	0	ENST00000329236.7:c.-77G>T		p.*26*	ENST00000329236	NM_001204466.1																																																																																	
MAP3K1	4214	MSKCC	GRCh37	5	56111866	56111866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	41	315	0	ENST00000399503.3:c.466G>T	p.Ala156Ser	p.A156S	ENST00000399503	NM_005921.1	156	Gca/Tca																																																																															
XIAP	331	MSKCC	GRCh37	X	123019845	123019845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	52	461	0	ENST00000355640.3:c.333G>T	p.Gln111His	p.Q111H	ENST00000355640		111	caG/caT																																																																															
MED12	9968	MSKCC	GRCh37	X	70338657	70338657	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	31	364	0	ENST00000374080.3:c.53G>T	p.Arg18Leu	p.R18L	ENST00000374080		18	cGg/cTg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612297	1612297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	75	486	0	ENST00000344749.5:c.1722G>T	p.Gln574His	p.Q574H	ENST00000344749	NM_001136139.2	574	caG/caT																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs869320707		P-0083774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	89	628	0	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0083790-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	150	331	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0083791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	252	498	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
CTCF	10664	MSKCC	GRCh37	16	67663371	67663371	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139828150		P-0083791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	77	418	0	ENST00000264010.4:c.1772C>T	p.Thr591Met	p.T591M	ENST00000264010	NM_006565.3	591	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112173388	112173388	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1060503282		P-0083791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	49	481	0	ENST00000257430.4:c.2097G>A	p.Trp699Ter	p.W699*	ENST00000257430	NM_000038.5	699	tgG/tgA																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5246039	5246039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	69	444	0	ENST00000357368.4:c.736C>T	p.Arg246Cys	p.R246C	ENST00000357368	NM_002850.3	246	Cgc/Tgc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53253957	53253957	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	58	388	0	ENST00000375401.3:c.115G>C	p.Glu39Gln	p.E39Q	ENST00000375401	NM_004187.3	39	Gag/Cag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289941	15289941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	43	580	1	ENST00000263388.2:c.3613G>A	p.Asp1205Asn	p.D1205N	ENST00000263388	NM_000435.2	1205	Gac/Aac																																																																															
APC	324	MSKCC	GRCh37	5	112175227	112175228	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0083791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	160	457	0	ENST00000257430.4:c.3936_3937del	p.Thr1313Ter	p.T1313*	ENST00000257430	NM_000038.5	1312	ggAAct/ggct																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061220	38061225	+	inframe_deletion	In_Frame_Del	DEL	CGTTCT	CGTTCT	-			P-0083792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			819	36	441	0	ENST00000250448.2:c.764_769del	p.Glu255_Asn256del	p.E255_N256del	ENST00000250448	NM_004496.3	255	gAGAACGgc/ggc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061185	38061202	+	inframe_deletion	In_Frame_Del	DEL	GCACTTGAAGCGCTTCTG	GCACTTGAAGCGCTTCTG	-			P-0083792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	277	441	0	ENST00000250448.2:c.787_804del	p.Gln263_Cys268del	p.Q263_C268del	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTCAAGTGC/-																																																																															
CDH1	999	MSKCC	GRCh37	16	68857527	68857530	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TAAG	TAAG	-	rs1415253676		P-0083792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	159	267	0	ENST00000261769.5:c.2164+3_2164+6del		p.X722_splice	ENST00000261769	NM_004360.3	722																																																																																
SLX4	84464	MSKCC	GRCh37	16	3646376	3646376	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371825444		P-0083792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	85	392	0	ENST00000294008.3:c.1702G>A	p.Val568Met	p.V568M	ENST00000294008	NM_032444.2	568	Gtg/Atg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589733	28589733	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	160	362	0	ENST00000241453.7:c.2647T>C	p.Ser883Pro	p.S883P	ENST00000241453	NM_004119.2	883	Tca/Cca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0083862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	24	542	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0083862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	21	515	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589304	28589304	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	87	293	0	ENST00000241453.7:c.2743A>G	p.Thr915Ala	p.T915A	ENST00000241453	NM_004119.2	915	Aca/Gca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435272	56435827	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTCAGGGAGGGCCCTGGGGCACTGTGGGTTAGAGAGCCGCCCCGAAGGGGCTGCTGAGTTGGATCTGGTGACTTGCTGATCAGGAGAAGGTGGCTCTGGCTGGGGCTGTGTCCGAGGAATAGGAGGCCTGGACTGGGGGACTCCGGTTTCTGGGCCAGGCTTCCTGCCATGCCACTGGAACCGCTTTTTGTAGTGGTGGTGCCGGTGGCGGTGGTAGTGGACATGGCTGGAAACCTGGGTTTCCCCTGTGGGCACCACCGAGTCCAAGGAACGAGGCCGAGAGGTCACACTAGGCTGCATGTCCACTCGCTGGGGATCCCCTTTAGGGCTGCAGTACACTAGGGGGTCAAAGTCACTGCTTAGGGAGCTGCAGAAAGTAGAACTGCTGCCATGGACCCCCTGTAGGCTGATGTCCGTGCAGTTGACCACAGAGTCACTGGAAGAGCCATGACAGGGCCCTGAGCTGGAGTCACTGGCTGGCCCATCTGCCAGGTACCCACTGCGTTCTGTGCAATAGCTTTCTCCAGATCCACTGCTGTCAGGGGGCCTGGCCC	GGCTCAGGGAGGGCCCTGGGGCACTGTGGGTTAGAGAGCCGCCCCGAAGGGGCTGCTGAGTTGGATCTGGTGACTTGCTGATCAGGAGAAGGTGGCTCTGGCTGGGGCTGTGTCCGAGGAATAGGAGGCCTGGACTGGGGGACTCCGGTTTCTGGGCCAGGCTTCCTGCCATGCCACTGGAACCGCTTTTTGTAGTGGTGGTGCCGGTGGCGGTGGTAGTGGACATGGCTGGAAACCTGGGTTTCCCCTGTGGGCACCACCGAGTCCAAGGAACGAGGCCGAGAGGTCACACTAGGCTGCATGTCCACTCGCTGGGGATCCCCTTTAGGGCTGCAGTACACTAGGGGGTCAAAGTCACTGCTTAGGGAGCTGCAGAAAGTAGAACTGCTGCCATGGACCCCCTGTAGGCTGATGTCCGTGCAGTTGACCACAGAGTCACTGGAAGAGCCATGACAGGGCCCTGAGCTGGAGTCACTGGCTGGCCCATCTGCCAGGTACCCACTGCGTTCTGTGCAATAGCTTTCTCCAGATCCACTGCTGTCAGGGGGCCTGGCCC	-			P-0083862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	32	665	0	ENST00000407977.2:c.1310_1865del	p.Arg437GlnfsTer78	p.R437Qfs*78	ENST00000407977		437	cGGGCCAGGCCCCCTGACAGCAGTGGATCTGGAGAAAGCTATTGCACAGAACGCAGTGGGTACCTGGCAGATGGGCCAGCCAGTGACTCCAGCTCAGGGCCCTGTCATGGCTCTTCCAGTGACTCTGTGGTCAACTGCACGGACATCAGCCTACAGGGGGTCCATGGCAGCAGTTCTACTTTCTGCAGCTCCCTAAGCAGTGACTTTGACCCCCTAGTGTACTGCAGCCCTAAAGGGGATCCCCAGCGAGTGGACATGCAGCCTAGTGTGACCTCTCGGCCTCGTTCCTTGGACTCGGTGGTGCCCACAGGGGAAACCCAGGTTTCCAGCCATGTCCACTACCACCGCCACCGGCACCACCACTACAAAAAGCGGTTCCAGTGGCATGGCAGGAAGCCTGGCCCAGAAACCGGAGTCCCCCAGTCCAGGCCTCCTATTCCTCGGACACAGCCCCAGCCAGAGCCACCTTCTCCTGATCAGCAAGTCACCAGATCCAACTCAGCAGCCCCTTCGGGGCGGCTCTCTAACCCACAGTGCCCCAGGGCCCTCCCTGAGCCa/ca																																																																															
USP8	9101	MSKCC	GRCh37	15	50781939	50782012	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGAAAAATCAGATTTAAAAAAAATTTTTTTTTAATTTTTTTTATTTTATTTTAATTAGGCTCAACGAGAACCT	TTGAAAAATCAGATTTAAAAAAAATTTTTTTTTAATTTTTTTTATTTTATTTTAATTAGGCTCAACGAGAACCT	-			P-0083862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	12	134	0	ENST00000307179.4:c.1891-55_1909del		p.X631_splice	ENST00000307179		631																																																																																
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0081667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	33	557	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0081667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	36	366	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
ATR	545	MSKCC	GRCh37	3	142261523	142261523	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs377698546		P-0083693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	10	329	0	ENST00000350721.4:c.3434T>C	p.Ile1145Thr	p.I1145T	ENST00000350721	NM_001184.3	1145	aTt/aCt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0083694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	103	196	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
RARA	5914	MSKCC	GRCh37	17	38510683	38510683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	185	443	0	ENST00000254066.5:c.937G>A	p.Ala313Thr	p.A313T	ENST00000254066	NM_000964.3	313	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7573979	7573980	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTCCAAGGCCTCATTCAGCTCTCGGAACATCTC			P-0083694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	38	416	0	ENST00000269305.4:c.1015_1047dup	p.Glu339_Glu349dup	p.E339_E349dup	ENST00000269305	NM_001126112.2	339	-/GAGATGTTCCGAGAGCTGAATGAGGCCTTGGAA																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31380534	31380534	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	69	498	0	ENST00000328111.2:c.1024C>G	p.Pro342Ala	p.P342A	ENST00000328111	NM_006892.3	342	Ccc/Gcc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81927366	81927366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	50	401	0	ENST00000359376.3:c.1039C>T	p.Arg347Cys	p.R347C	ENST00000359376	NM_002661.3	347	Cgc/Tgc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749433	41749433	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0083695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	41	376	0	ENST00000226382.2:c.362A>T	p.His121Leu	p.H121L	ENST00000226382	NM_003924.3	121	cAc/cTc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986707	36986707	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0083698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	104	333	0	ENST00000354822.5:c.982C>T	p.Gln328Ter	p.Q328*	ENST00000354822	NM_001079668.2	328	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0083698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	89	273	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987085	36987137	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCCTGCGAGAAGAGCACCCGGCGCTTCCTGCGCGGCGCGCTTGGCAGCGGG	GCGCCTGCGAGAAGAGCACCCGGCGCTTCCTGCGCGGCGCGCTTGGCAGCGGG	-			P-0083698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	114	442	0	ENST00000354822.5:c.552_604del	p.Pro185GlyfsTer236	p.P185Gfs*236	ENST00000354822	NM_001079668.2	184	gcCCCGCTGCCAAGCGCGCCGCGCAGGAAGCGCCGGGTGCTCTTCTCGCAGGCGCag/gcag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382239	152382239	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	93	359	0	ENST00000206249.3:c.1349C>G	p.Ser450Cys	p.S450C	ENST00000206249	NM_000125.3	450	tCt/tGt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105589	11105589	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0083698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	134	513	0	ENST00000344626.4:c.1505A>T	p.Lys502Met	p.K502M	ENST00000344626	NM_003072.3	502	aAg/aTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112122	115112122	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	140	614	0	ENST00000257566.3:c.1618G>T	p.Gly540Cys	p.G540C	ENST00000257566	NM_016569.3	540	Ggt/Tgt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223935	36223935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	151	677	0	ENST00000222270.7:c.6485C>T	p.Thr2162Ile	p.T2162I	ENST00000222270	NM_014727.1	2162	aCa/aTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0083706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	22	212	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0083706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	87	475	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868404	45868404	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372425466		P-0083706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	59	387	0	ENST00000391945.4:c.373C>T	p.Arg125Cys	p.R125C	ENST00000391945	NM_000400.3	125	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0083706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	25	208	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141007	55141007	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0083706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	49	293	0	ENST00000257290.5:c.1654-1G>T		p.X552_splice	ENST00000257290	NM_006206.4	552																																																																																
APC	324	MSKCC	GRCh37	5	112173830	112173830	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0083706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	17	301	0	ENST00000257430.4:c.2539G>T	p.Glu847Ter	p.E847*	ENST00000257430	NM_000038.5	847	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175991	112175991	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0083706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	44	412	0	ENST00000257430.4:c.4700C>A	p.Ser1567Ter	p.S1567*	ENST00000257430	NM_000038.5	1567	tCa/tAa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752909	57752909	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151304321		P-0083706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	30	363	0	ENST00000274289.3:c.1019C>T	p.Pro340Leu	p.P340L	ENST00000274289	NM_006622.3	340	cCg/cTg																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031930	26031931	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-	rs777929235		P-0083706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	93	485	0	ENST00000244661.2:c.358_359del	p.Ile120TyrfsTer27	p.I120Yfs*27	ENST00000244661	NM_003537.3	120	ATt/t																																																																															
TET1	80312	MSKCC	GRCh37	10	70333223	70333223	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	97	435	0	ENST00000373644.4:c.1128G>T	p.Trp376Cys	p.W376C	ENST00000373644	NM_030625.2	376	tgG/tgT																																																																															
APLNR	187	MSKCC	GRCh37	11	57004408	57004408	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	A			P-0083706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	72	373	0	ENST00000257254.3:c.71G>T	p.Trp24Leu	p.W24L	ENST00000257254		24	tGg/tTg																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281431	49281431	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	71	447	0	ENST00000282018.3:c.478G>T	p.Gly160Trp	p.G160W	ENST00000282018	NM_020377.2	160	Ggg/Tgg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348163	348163	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	76	455	0	ENST00000262320.3:c.1343C>A	p.Pro448Gln	p.P448Q	ENST00000262320	NM_003502.3	448	cCg/cAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411182	63411182	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0083706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	84	392	0	ENST00000330258.3:c.1985C>A	p.Ser662Ter	p.S662*	ENST00000330258	NM_152424.3	662	tCa/tAa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931588		P-0083710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	13	424	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																															
ERF	2077	MSKCC	GRCh37	19	42753086	42753087	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0083710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	133	532	0	ENST00000222329.4:c.1177dup	p.Glu393GlyfsTer8	p.E393Gfs*8	ENST00000222329	NM_006494.2	393	gag/gGag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163757	47163757	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0083710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	97	407	0	ENST00000409792.3:c.2369A>T	p.Asp790Val	p.D790V	ENST00000409792	NM_014159.6	790	gAt/gTt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775623976		P-0083746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	72	334	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0083746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	41	348	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591931	48591931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	85	317	0	ENST00000342988.3:c.1094G>A	p.Gly365Asp	p.G365D	ENST00000342988	NM_005359.5	365	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089730	27089730	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0083746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	54	470	0	ENST00000324856.7:c.2686G>T	p.Glu896Ter	p.E896*	ENST00000324856	NM_006015.4	896	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913240		P-0083746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	60	332	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47058741	47058741	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0083746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	72	336	0	ENST00000409792.3:c.7537A>C	p.Thr2513Pro	p.T2513P	ENST00000409792	NM_014159.6	2513	Act/Cct																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971099	21971100	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCAGCGTCGTGCACGGGTCGGGTGAGA			P-0083746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	26	340	0	ENST00000304494.5:c.231_258dup	p.Arg87SerfsTer42	p.R87Sfs*42	ENST00000304494	NM_000077.4	86	-/TCTCACCCGACCCGTGCACGACGCTGCC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242478	+	frameshift_variant	Frame_Shift_Del	DEL	GAATTAAGAGAAG	GAATTAAGAGAAG	AAC			P-0083749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	169	333	0	ENST00000275493.2:c.2236_2248delinsAAC	p.Glu746AsnfsTer17	p.E746Nfs*17	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGca/AACca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0083751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	133	276	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274290	5274290	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368676720		P-0083751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	188	485	0	ENST00000357368.4:c.157G>A	p.Val53Met	p.V53M	ENST00000357368	NM_002850.3	53	Gtg/Atg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046378	69046378	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375506738		P-0083751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	211	413	1	ENST00000288368.4:c.3851C>T	p.Ala1284Val	p.A1284V	ENST00000288368	NM_024870.2	1284	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579439	7579440	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCGGT			P-0083751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	232	584	0	ENST00000269305.4:c.243_247dup	p.Ala83AspfsTer42	p.A83Dfs*42	ENST00000269305	NM_001126112.2	83	gcg/gACCGGcg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37061886	37061886	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082612-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	69	453	0	ENST00000231790.2:c.970G>C	p.Glu324Gln	p.E324Q	ENST00000231790	NM_000249.3	324	Gag/Cag																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379712	17379712	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082612-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			771	50	422	0	ENST00000359435.4:c.97G>C	p.Gly33Arg	p.G33R	ENST00000359435	NM_001033549.1	33	Ggg/Cgg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337650	73337650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083506-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	18	450	1	ENST00000377767.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000377767	NM_014953.3	689	cGa/cAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573563	48573564	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0083506-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	39	478	0	ENST00000342988.3:c.153dup	p.Asp52ArgfsTer2	p.D52Rfs*2	ENST00000342988	NM_005359.5	49	-/A																																																																															
RARA	5914	MSKCC	GRCh37	17	38508656	38508656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083506-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	60	484	0	ENST00000254066.5:c.704G>A	p.Cys235Tyr	p.C235Y	ENST00000254066	NM_000964.3	235	tGc/tAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0083506-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	24	364	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660470	227660470	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0083506-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	51	614	0	ENST00000305123.5:c.2985T>A	p.Ser995Arg	p.S995R	ENST00000305123	NM_005544.2	995	agT/agA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105553	27105553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	65	545	0	ENST00000324856.7:c.5164C>T	p.Arg1722Ter	p.R1722*	ENST00000324856	NM_006015.4	1722	Cga/Tga																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14042061	14042061	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs562305007		P-0083667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			793	42	588	0	ENST00000311895.7:c.2608G>A	p.Val870Ile	p.V870I	ENST00000311895	NM_005236.2	870	Gtt/Att																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627788	37627790	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs587778181		P-0083667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			901	70	669	0	ENST00000447079.4:c.1705_1707del	p.Ser569del	p.S569del	ENST00000447079	NM_015083.1	568	cCTTct/cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0083667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			825	78	693	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175225	112175225	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0083667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	42	497	0	ENST00000257430.4:c.3935del	p.Gly1312GlufsTer9	p.G1312Efs*9	ENST00000257430	NM_000038.5	1312	Gga/ga																																																																															
WT1	7490	MSKCC	GRCh37	11	32456350	32456350	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	48	506	0	ENST00000332351.3:c.542G>C	p.Gly181Ala	p.G181A	ENST00000332351	NM_024426.4	181	gGt/gCt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197716	123197716	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	89	415	0	ENST00000218089.9:c.1840C>T	p.Arg614Ter	p.R614*	ENST00000218089	NM_001042749.1	614	Cga/Tga																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200284	67200284	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs187592167		P-0083668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	234	635	0	ENST00000312629.5:c.592G>A	p.Glu198Lys	p.E198K	ENST00000312629	NM_003952.2	198	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs137854575		P-0083672-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	113	435	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0083672-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	161	557	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118901	70118902	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0083672-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	147	605	0	ENST00000245479.2:c.474_475dup	p.Glu159GlyfsTer25	p.E159Gfs*25	ENST00000245479	NM_000346.3	158	gcg/gcGGg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120241	70120241	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083672-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	143	540	0	ENST00000245479.2:c.1246del	p.Gln416AsnfsTer54	p.Q416Nfs*54	ENST00000245479	NM_000346.3	415	Ccc/cc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022592	31022592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs373221034		P-0083672-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	139	578	0	ENST00000375687.4:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000375687	NM_015338.5	693	Cga/Tga																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25978935	25978935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083672-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	100	329	0	ENST00000435504.4:c.988G>A	p.Glu330Lys	p.E330K	ENST00000435504		330	Gaa/Aaa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138839	64138839	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1321401996		P-0083672-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	17	413	0	ENST00000334205.4:c.2206C>T	p.Arg736Trp	p.R736W	ENST00000334205	NM_003942.2	736	Cgg/Tgg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26927896	26927896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083672-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	218	332	0	ENST00000381527.3:c.335G>A	p.Arg112Lys	p.R112K	ENST00000381527	NM_001260.1	112	aGa/aAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0083672-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	112	289	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112170811	112170811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083672-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	94	397	0	ENST00000257430.4:c.1907G>A	p.Gly636Asp	p.G636D	ENST00000257430	NM_000038.5	636	gGt/gAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70357426	70357426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069667-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			92	13	201	0	ENST00000374080.3:c.5767G>T	p.Gly1923Ter	p.G1923*	ENST00000374080		1923	Gga/Tga																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745559	162745559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069667-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			209	23	471	0	ENST00000367921.3:c.1974G>T	p.Glu658Asp	p.E658D	ENST00000367921	NM_006182.2	658	gaG/gaT																																																																															
MET	4233	MSKCC	GRCh37	7	116411889	116411900	+	splice_region_variant,intron_variant	Splice_Region	DEL	CTCTCTGTTTTA	CTCTCTGTTTTA	-			P-0069667-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			214	48	517	1	ENST00000397752.3:c.2888-14_2888-3del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
RBM10	8241	MSKCC	GRCh37	X	47044476	47044476	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069667-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			92	19	188	0	ENST00000329236.7:c.1741del	p.Ala581ProfsTer45	p.A581Pfs*45	ENST00000329236	NM_001204466.1	580	tGg/tg																																																																															
CTR9	9646	MSKCC	GRCh37	11	10776586	10776586	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0069667-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			144	12	411	0	ENST00000361367.2:c.226A>T	p.Arg76Ter	p.R76*	ENST00000361367	NM_014633.3	76	Aga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108224493	108224493	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs748192003		P-0080775-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	35	369	0	ENST00000278616.4:c.8672G>A	p.Gly2891Asp	p.G2891D	ENST00000278616	NM_000051.3	2891	gGt/gAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0080775-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			370	43	382	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
MED12	9968	MSKCC	GRCh37	X	70356781	70356781	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761189421		P-0080775-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			242	55	286	0	ENST00000374080.3:c.5453C>T	p.Pro1818Leu	p.P1818L	ENST00000374080		1818	cCg/cTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217078	2217078	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080775-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			496	65	529	0	ENST00000398665.3:c.2533A>G	p.Ser845Gly	p.S845G	ENST00000398665	NM_032482.2	845	Agc/Ggc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52584646	52584646	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080775-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			520	74	605	0	ENST00000394830.3:c.4367T>C	p.Val1456Ala	p.V1456A	ENST00000394830	NM_018313.4	1456	gTt/gCt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52584655	52584655	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0080775-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			507	74	597	0	ENST00000394830.3:c.4360-2A>T		p.X1454_splice	ENST00000394830	NM_018313.4	1454																																																																																
APC	324	MSKCC	GRCh37	5	112177289	112177289	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080775-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			525	64	579	0	ENST00000257430.4:c.5998A>G	p.Ser2000Gly	p.S2000G	ENST00000257430	NM_000038.5	2000	Agt/Ggt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0082278-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	157	292	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479774	67479774	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906856		P-0082278-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			531	286	480	0	ENST00000327367.4:c.1081G>A	p.Glu361Lys	p.E361K	ENST00000327367	NM_005902.3	361	Gag/Aag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591881	48591882	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0082278-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			184	270	515	0	ENST00000342988.3:c.1045dup	p.Thr349AsnfsTer3	p.T349Nfs*3	ENST00000342988	NM_005359.5	348	-/A																																																																															
FLT1	2321	MSKCC	GRCh37	13	28895649	28895649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082278-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			472	252	420	0	ENST00000282397.4:c.3125G>T	p.Gly1042Val	p.G1042V	ENST00000282397	NM_002019.4	1042	gGc/gTc																																																																															
BCL6	604	MSKCC	GRCh37	3	187446275	187446275	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082278-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			542	287	495	0	ENST00000232014.4:c.1413C>A	p.His471Gln	p.H471Q	ENST00000232014	NM_001130845.1	471	caC/caA																																																																															
BCL2	596	MSKCC	GRCh37	18	60985799	60985799	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	61	452	0	ENST00000333681.4:c.101A>G	p.Asp34Gly	p.D34G	ENST00000333681		34	gAt/gGt																																																																															
ATM	472	MSKCC	GRCh37	11	108199967	108199967	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0083275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	44	449	0	ENST00000278616.4:c.7307+2T>C		p.X2436_splice	ENST00000278616	NM_000051.3	2436																																																																																
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	292	566	2	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435880	149435880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	183	417	0	ENST00000286301.3:c.2344C>T	p.Arg782Cys	p.R782C	ENST00000286301	NM_005211.3	782	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0083507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	248	302	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0083527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	187	536	0	ENST00000269305.4:c.737T>A	p.Met246Lys	p.M246K	ENST00000269305	NM_001126112.2	246	aTg/aAg																																																																															
CDH1	999	MSKCC	GRCh37	16	68844127	68844127	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780537		P-0083527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	108	591	0	ENST00000261769.5:c.715G>A	p.Gly239Arg	p.G239R	ENST00000261769	NM_004360.3	239	Ggg/Agg																																																																															
AURKA	6790	MSKCC	GRCh37	20	54959378	54959378	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0083527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	138	312	0	ENST00000312783.6:c.322A>G	p.Asn108Asp	p.N108D	ENST00000312783	NM_198436.1	108	Aat/Gat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0083540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	31	386	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220612	1220612	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs786201213		P-0083544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	120	448	0	ENST00000326873.7:c.630C>A	p.Cys210Ter	p.C210*	ENST00000326873	NM_000455.4	210	tgC/tgA																																																																															
KDR	3791	MSKCC	GRCh37	4	55968566	55968566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	97	341	0	ENST00000263923.4:c.2097G>A	p.Met699Ile	p.M699I	ENST00000263923	NM_002253.2	699	atG/atA																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0083599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	77	643	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163720	32163720	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1253487294		P-0083599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	106	689	0	ENST00000375023.3:c.5506G>A	p.Glu1836Lys	p.E1836K	ENST00000375023	NM_004557.3	1836	Gag/Aag																																																																															
NF2	4771	MSKCC	GRCh37	22	30038240	30038240	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	58	598	0	ENST00000338641.4:c.413C>T	p.Ser138Phe	p.S138F	ENST00000338641	NM_000268.3	138	tCt/tTt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16022773	16022773	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0083599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	55	628	0	ENST00000268712.3:c.1879C>T	p.Arg627Ter	p.R627*	ENST00000268712	NM_006311.3	627	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579716	7579716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	78	645	0	ENST00000269305.4:c.80C>T	p.Pro27Leu	p.P27L	ENST00000269305	NM_001126112.2	27	cCt/cTt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193099303	193099303	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0083599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	47	421	0	ENST00000367435.3:c.238-1G>C		p.X80_splice	ENST00000367435	NM_024529.4	80																																																																																
TCF3	6929	MSKCC	GRCh37	19	1611758	1611758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	98	711	0	ENST00000344749.5:c.1904C>T	p.Ser635Leu	p.S635L	ENST00000344749	NM_001136139.2	635	tCa/tTa																																																																															
RRAS	6237	MSKCC	GRCh37	19	50139022	50139022	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1428526675		P-0083599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	101	731	0	ENST00000246792.3:c.541G>A	p.Glu181Lys	p.E181K	ENST00000246792	NM_006270.3	181	Gag/Aag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162735812	162735812	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	175	692	0	ENST00000367921.3:c.1121C>G	p.Ser374Cys	p.S374C	ENST00000367921	NM_006182.2	374	tCt/tGt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838020	156838020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			699	119	839	0	ENST00000524377.1:c.553C>T	p.His185Tyr	p.H185Y	ENST00000524377	NM_002529.3	185	Cac/Tac																																																																															
EZH2	2146	MSKCC	GRCh37	7	148543564	148543564	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0083599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	76	607	0	ENST00000320356.2:c.244G>T	p.Glu82Ter	p.E82*	ENST00000320356	NM_004456.4	82	Gag/Tag																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271357	26271357	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0083599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			805	101	1005	0	ENST00000305910.3:c.256C>T	p.Gln86Ter	p.Q86*	ENST00000305910	NM_003534.2	86	Cag/Tag																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46262921	46262921	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0083599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	67	601	0	ENST00000371998.3:c.1094C>G	p.Ser365Ter	p.S365*	ENST00000371998		365	tCa/tGa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120478106	120478106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	91	714	0	ENST00000256646.2:c.3644C>T	p.Pro1215Leu	p.P1215L	ENST00000256646	NM_024408.3	1215	cCa/cTa																																																																															
KIT	3815	MSKCC	GRCh37	4	55592111	55592111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	68	570	0	ENST00000288135.5:c.1435G>C	p.Asp479His	p.D479H	ENST00000288135	NM_000222.2	479	Gat/Cat																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265112	46265112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			913	125	797	0	ENST00000371998.3:c.1982C>T	p.Ser661Phe	p.S661F	ENST00000371998		661	tCc/tTc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866285	42866285	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0083599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	95	741	0	ENST00000398585.3:c.347C>G	p.Ser116Ter	p.S116*	ENST00000398585	NM_001135099.1	116	tCa/tGa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721495	176721495	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0083599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	113	844	0	ENST00000439151.2:c.7126G>T	p.Glu2376Ter	p.E2376*	ENST00000439151	NM_022455.4	2376	Gag/Tag																																																																															
RAD21	5885	MSKCC	GRCh37	8	117859924	117859924	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	152	585	0	ENST00000297338.2:c.1711C>G	p.Leu571Val	p.L571V	ENST00000297338	NM_006265.2	571	Ctt/Gtt																																																																															
NF1	4763	MSKCC	GRCh37	17	29677221	29677221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	28	542	0	ENST00000358273.4:c.7342G>A	p.Glu2448Lys	p.E2448K	ENST00000358273	NM_001042492.2	2448	Gaa/Aaa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46262935	46262935	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	55	553	0	ENST00000371998.3:c.1108C>T	p.Gln370Ter	p.Q370*	ENST00000371998		370	Cag/Tag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212087	36212087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	90	781	0	ENST00000222270.7:c.1838C>T	p.Ser613Leu	p.S613L	ENST00000222270	NM_014727.1	613	tCa/tTa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061211	38061240	+	inframe_deletion	In_Frame_Del	DEL	AGTAGCAGCCGTTCTCGAACATGTTGCCGG	AGTAGCAGCCGTTCTCGAACATGTTGCCGG	-			P-0083647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	21	416	0	ENST00000250448.2:c.749_778del	p.Ser250_Tyr259del	p.S250_Y259del	ENST00000250448	NM_004496.3	250	tCCGGCAACATGTTCGAGAACGGCTGCTACTtg/ttg																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0083648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	29	537	0	ENST00000397752.3:c.3028G>T	p.Asp1010Tyr	p.D1010Y	ENST00000397752	NM_000245.2	1010	Gat/Tat																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25497836	25497836	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0083648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	14	432	0	ENST00000264709.3:c.613G>T	p.Glu205Ter	p.E205*	ENST00000264709	NM_175629.2	205	Gag/Tag																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342655	87342655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	24	450	0	ENST00000277120.3:c.940G>T	p.Ala314Ser	p.A314S	ENST00000277120		314	Gcg/Tcg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280067	66280067	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1342407694		P-0083682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	46	531	0	ENST00000273854.3:c.1622G>A	p.Arg541Gln	p.R541Q	ENST00000273854	NM_004439.5	541	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0083682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	56	321	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577466	7577531	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCCAGTGTGCAGGGTGGCAAGTGGCTCCTGACCTGGAGTCTTCCAGTGTGATGATGGTGAGGATG	GGCCAGTGTGCAGGGTGGCAAGTGGCTCCTGACCTGGAGTCTTCCAGTGTGATGATGGTGAGGATG	-			P-0083682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	111	516	0	ENST00000269305.4:c.750_782+33del		p.X250_splice	ENST00000269305	NM_001126112.2	250																																																																																
DDR2	4921	MSKCC	GRCh37	1	162724541	162724541	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759709680		P-0083684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	60	673	2	ENST00000367921.3:c.313C>T	p.Arg105Cys	p.R105C	ENST00000367921	NM_006182.2	105	Cgc/Tgc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044595	47044595	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0083684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	72	873	0	ENST00000329236.7:c.1858G>T	p.Glu620Ter	p.E620*	ENST00000329236	NM_001204466.1	620	Gag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108206593	108206593	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs587782049		P-0083684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	63	472	0	ENST00000278616.4:c.8173G>C	p.Asp2725His	p.D2725H	ENST00000278616	NM_000051.3	2725	Gat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913240		P-0083684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	106	450	1	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
TOP1	7150	MSKCC	GRCh37	20	39721147	39721147	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	51	508	0	ENST00000361337.2:c.650G>T	p.Trp217Leu	p.W217L	ENST00000361337	NM_003286.2	217	tGg/tTg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162954	38162954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	32	514	0	ENST00000317025.8:c.2252C>T	p.Pro751Leu	p.P751L	ENST00000317025	NM_023034.1	751	cCa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0083687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	58	590	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039893	47039893	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0083687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	44	448	0	ENST00000329236.7:c.1002G>A	p.Trp334Ter	p.W334*	ENST00000329236	NM_001204466.1	334	tgG/tgA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs80338963		P-0083687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	64	612	0	ENST00000342988.3:c.1081C>G	p.Arg361Gly	p.R361G	ENST00000342988	NM_005359.5	361	Cgc/Ggc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0083687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	48	357	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs760043106		P-0083691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	47	801	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393659	139393659	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773137647		P-0083691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	95	683	0	ENST00000277541.6:c.5987C>T	p.Thr1996Met	p.T1996M	ENST00000277541	NM_017617.3	1996	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0083124-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			196	17	640	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
NF2	4771	MSKCC	GRCh37	22	30070881	30070881	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866689896		P-0083124-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			134	11	546	0	ENST00000338641.4:c.1397G>A	p.Arg466Gln	p.R466Q	ENST00000338641	NM_000268.3	466	cGa/cAa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10267073	10267073	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083124-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			168	12	472	0	ENST00000340748.4:c.1345C>G	p.Leu449Val	p.L449V	ENST00000340748		449	Ctt/Gtt																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169991081	169991081	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs774546861		P-0083435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	33	191	0	ENST00000295797.4:c.599T>C	p.Val200Ala	p.V200A	ENST00000295797	NM_002740.5	200	gTg/gCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398280	25398281	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0083435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	165	291	0	ENST00000256078.4:c.38_39delinsTT	p.Gly13Val	p.G13V	ENST00000256078	NM_033360.2	13	gGC/gTT																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679697	33679697	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201730196		P-0083435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	61	436	0	ENST00000308377.4:c.2384C>T	p.Thr795Met	p.T795M	ENST00000308377	NM_152270.3	795	aCg/aTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221330	1221338	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTGCTGAAA	CTGCTGAAA	-			P-0083435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	181	364	0	ENST00000326873.7:c.853_861del	p.Leu285_Lys287del	p.L285_K287del	ENST00000326873	NM_000455.4	285	CTGCTGAAA/-																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9786995	9786995	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	71	362	0	ENST00000377346.4:c.3026A>G	p.Glu1009Gly	p.E1009G	ENST00000377346	NM_005026.3	1009	gAg/gGg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123164967	123164967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	200	278	0	ENST00000218089.9:c.280G>T	p.Ala94Ser	p.A94S	ENST00000218089	NM_001042749.1	94	Gct/Tct																																																																															
GNA11	2767	MSKCC	GRCh37	19	3118934	3118934	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	45	345	2	ENST00000078429.4:c.623del	p.Gly208AlafsTer16	p.G208Afs*16	ENST00000078429	NM_002067.2	206	gtG/gt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	75	313	0	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	119	224	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	105	456	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	56	259	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	56	318	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
ATR	545	MSKCC	GRCh37	3	142261554	142261555	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1043355995		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	73	291	0	ENST00000350721.4:c.3402dup	p.Asn1135Ter	p.N1135*	ENST00000350721	NM_001184.3	1134	-/T																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	65	400	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
FLT3	2322	MSKCC	GRCh37	13	28578215	28578216	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	71	337	0	ENST00000241453.7:c.2955_2956del	p.Pro986AlafsTer27	p.P986Afs*27	ENST00000241453	NM_004119.2	985	tcTCcg/tccg																																																																															
RB1	5925	MSKCC	GRCh37	13	48878069	48878069	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	46	343	0	ENST00000267163.4:c.25del	p.Thr9ArgfsTer56	p.T9Rfs*56	ENST00000267163	NM_000321.2	7	cgA/cg																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	55	448	0	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
ATM	472	MSKCC	GRCh37	11	108153473	108153473	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760928285		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	77	359	0	ENST00000278616.4:c.3613C>T	p.Arg1205Cys	p.R1205C	ENST00000278616	NM_000051.3	1205	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	85	354	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	65	329	2	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99170914	99170914	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1227700629		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	83	348	0	ENST00000074304.5:c.1543C>T	p.Arg515Ter	p.R515*	ENST00000074304	NM_001134224.1	515	Cga/Tga																																																																															
CDH1	999	MSKCC	GRCh37	16	68845757	68845757	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587780784		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	43	286	0	ENST00000261769.5:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000261769	NM_004360.3	335	Cga/Tga																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	76	306	4	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	45	270	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	73	480	0	ENST00000575354.2:c.3743del	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																															
SMO	6608	MSKCC	GRCh37	7	128843237	128843237	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	58	361	0	ENST00000249373.3:c.349del	p.Arg117AlafsTer5	p.R117Afs*5	ENST00000249373	NM_005631.4	115	gCc/gc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99169316	99169316	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1320693278		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	82	385	0	ENST00000074304.5:c.1246G>A	p.Ala416Thr	p.A416T	ENST00000074304	NM_001134224.1	416	Gcc/Acc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046958	128046958	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs772883177		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	82	340	0	ENST00000285398.2:c.777A>T	p.Glu259Asp	p.E259D	ENST00000285398	NM_000122.1	259	gaA/gaT																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	66	381	3	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																																																															
MSH2	4436	MSKCC	GRCh37	2	47639588	47639588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	52	252	0	ENST00000233146.2:c.687del	p.Ala230LeufsTer16	p.A230Lfs*16	ENST00000233146	NM_000251.2	227	agA/ag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271747	15271747	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	74	485	1	ENST00000263388.2:c.6692del	p.Pro2231GlnfsTer15	p.P2231Qfs*15	ENST00000263388	NM_000435.2	2231	cCa/ca																																																																															
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	77	316	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384651	31384651	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	72	391	0	ENST00000328111.2:c.1359del	p.Leu454SerfsTer136	p.L454Sfs*136	ENST00000328111	NM_006892.3	451	gaG/ga																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972669	25972669	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369844902		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	95	360	1	ENST00000435504.4:c.1756C>T	p.Arg586Cys	p.R586C	ENST00000435504		586	Cgt/Tgt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533850	63533850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	126	395	0	ENST00000307078.5:c.1304C>T	p.Pro435Leu	p.P435L	ENST00000307078	NM_004655.3	435	cCg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420661	49420661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	77	381	0	ENST00000301067.7:c.15088C>T	p.Arg5030Cys	p.R5030C	ENST00000301067	NM_003482.3	5030	Cgt/Tgt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81558901	81558901	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772600260		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	74	301	0	ENST00000298171.2:c.494C>T	p.Thr165Met	p.T165M	ENST00000298171	NM_000369.2	165	aCg/aTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214728	36214728	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	109	343	0	ENST00000222270.7:c.3159del	p.Arg1055GlyfsTer127	p.R1055Gfs*127	ENST00000222270	NM_014727.1	1052	Ggg/gg																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30134505	30134505	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	29	188	0	ENST00000263025.4:c.26del	p.Gly9AlafsTer23	p.G9Afs*23	ENST00000263025	NM_002746.2	9	gGc/gc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033781	48033781	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs184131049		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	72	337	0	ENST00000234420.5:c.3992G>A	p.Arg1331Gln	p.R1331Q	ENST00000234420	NM_000179.2	1331	cGa/cAa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778282	3778282	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	76	429	0	ENST00000262367.5:c.6766del	p.Leu2256SerfsTer46	p.L2256Sfs*46	ENST00000262367	NM_004380.2	2256	Ctc/tc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128044417	128044417	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1805162		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	91	436	0	ENST00000285398.2:c.1204G>A	p.Gly402Ser	p.G402S	ENST00000285398	NM_000122.1	402	Ggc/Agc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119582440	119582440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	63	360	0	ENST00000316626.5:c.961C>T	p.Arg321Ter	p.R321*	ENST00000316626		321	Cga/Tga																																																																															
MSI2	124540	MSKCC	GRCh37	17	55752444	55752444	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1422545682		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	62	360	0	ENST00000284073.2:c.902C>T	p.Ala301Val	p.A301V	ENST00000284073	NM_138962.2	301	gCg/gTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10277332	10277332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1430311136		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	81	412	0	ENST00000340748.4:c.785C>T	p.Pro262Leu	p.P262L	ENST00000340748		262	cCg/cTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633501	3633501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs560866356		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	51	286	0	ENST00000294008.3:c.4750C>T	p.Arg1584Cys	p.R1584C	ENST00000294008	NM_032444.2	1584	Cgc/Tgc																																																																															
HGF	3082	MSKCC	GRCh37	7	81355326	81355326	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	53	302	0	ENST00000222390.5:c.1048C>T	p.Arg350Ter	p.R350*	ENST00000222390	NM_000601.4	350	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140534476	140534476	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs557241012		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	66	366	0	ENST00000288602.6:c.437G>A	p.Arg146Gln	p.R146Q	ENST00000288602	NM_004333.4	146	cGg/cAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346588	89346588	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747992186		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	68	406	1	ENST00000301030.4:c.6362C>T	p.Ala2121Val	p.A2121V	ENST00000301030	NM_001256183.1	2121	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434175	49434175	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs570260017		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	85	517	0	ENST00000301067.7:c.7378C>T	p.Arg2460Cys	p.R2460C	ENST00000301067	NM_003482.3	2460	Cgt/Tgt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879618	37879618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	177	457	0	ENST00000269571.5:c.1993G>A	p.Val665Met	p.V665M	ENST00000269571		665	Gtg/Atg																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643300	38643300	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750832911		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	65	326	1	ENST00000299084.4:c.770G>A	p.Arg257His	p.R257H	ENST00000299084	NM_152594.2	257	cGc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157517313	157517313	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752398721		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	54	235	0	ENST00000346085.5:c.3877G>A	p.Glu1293Lys	p.E1293K	ENST00000346085	NM_020732.3	1293	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254653	16254653	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	85	347	0	ENST00000375759.3:c.1918G>T	p.Gly640Cys	p.G640C	ENST00000375759	NM_015001.2	640	Ggc/Tgc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798340	45798340	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	67	547	0	ENST00000372115.3:c.554del	p.Gly185AlafsTer41	p.G185Afs*41	ENST00000372115	NM_001048171.1	185	gGc/gc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436027	110436027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	74	449	0	ENST00000375856.3:c.2374G>A	p.Gly792Arg	p.G792R	ENST00000375856	NM_003749.2	792	Ggg/Agg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244386	5244386	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1383575470		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	67	463	0	ENST00000357368.4:c.1096G>A	p.Glu366Lys	p.E366K	ENST00000357368	NM_002850.3	366	Gaa/Aaa																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422257	47422257	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1324454897		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	142	373	0	ENST00000404338.3:c.325C>T	p.Arg109Ter	p.R109*	ENST00000404338	NM_004491.4	109	Cga/Tga																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182683417	182683417	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	86	275	0	ENST00000292782.4:c.128A>T	p.Asn43Ile	p.N43I	ENST00000292782	NM_020640.2	43	aAt/aTt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056577	26056577	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	58	349	0	ENST00000343677.2:c.80del	p.Lys27ArgfsTer36	p.K27Rfs*36	ENST00000343677	NM_005319.3	27	aAg/ag																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40685709	40685709	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	82	321	0	ENST00000249776.8:c.862C>T	p.Arg288Ter	p.R288*	ENST00000249776	NM_033286.3	288	Cga/Tga																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165644	118165644	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs538766512		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	92	438	0	ENST00000369448.3:c.154G>A	p.Val52Ile	p.V52I	ENST00000369448	NM_017709.3	52	Gtc/Atc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411245	63411245	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1329771600		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	79	447	0	ENST00000330258.3:c.1922G>A	p.Arg641Gln	p.R641Q	ENST00000330258	NM_152424.3	641	cGa/cAa																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47599392	47599392	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368260283		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	70	384	0	ENST00000395288.2:c.160C>T	p.Arg54Trp	p.R54W	ENST00000395288	NM_016506.5	54	Cgg/Tgg																																																																															
GAB2	9846	MSKCC	GRCh37	11	77930356	77930356	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747450985		P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	65	384	0	ENST00000361507.4:c.1993C>T	p.Arg665Trp	p.R665W	ENST00000361507	NM_080491.2	665	Cgg/Tgg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98220342	98220342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	51	351	0	ENST00000331920.6:c.3121C>A	p.Leu1041Ile	p.L1041I	ENST00000331920	NM_000264.3	1041	Ctc/Atc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43766883	43766884	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	61	373	0	ENST00000382044.4:c.1167dup	p.Glu390ArgfsTer6	p.E390Rfs*6	ENST00000382044	NM_001141980.1	389	-/A																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118365454	118365454	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	66	331	0	ENST00000534358.1:c.5338del	p.Trp1780GlyfsTer43	p.W1780Gfs*43	ENST00000534358	NM_005933.3	1779	Ttt/tt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311692	15311692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	39	309	0	ENST00000263388.2:c.25C>T	p.Arg9Cys	p.R9C	ENST00000263388	NM_000435.2	9	Cgc/Tgc																																																																															
GAB2	9846	MSKCC	GRCh37	11	77938022	77938022	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	84	413	0	ENST00000361507.4:c.696G>T	p.Gln232His	p.Q232H	ENST00000361507	NM_080491.2	232	caG/caT																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10247791	10247791	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	59	414	0	ENST00000340748.4:c.4411del	p.Ala1471ProfsTer78	p.A1471Pfs*78	ENST00000340748		1471	Gcc/cc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703547	47703547	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	67	343	0	ENST00000233146.2:c.2047G>C	p.Gly683Arg	p.G683R	ENST00000233146	NM_000251.2	683	Ggg/Cgg																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981625	101981625	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	67	325	0	ENST00000282441.5:c.46C>T	p.Gln16Ter	p.Q16*	ENST00000282441	NM_001130145.2	16	Caa/Taa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43767876	43767876	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	79	297	0	ENST00000382044.4:c.972C>A	p.Cys324Ter	p.C324*	ENST00000382044	NM_001141980.1	324	tgC/tgA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853041	151853041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	89	366	0	ENST00000262189.6:c.11914C>T	p.Pro3972Ser	p.P3972S	ENST00000262189	NM_170606.2	3972	Cca/Tca																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127754	64127754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	37	292	0	ENST00000334205.4:c.247C>T	p.Arg83Cys	p.R83C	ENST00000334205	NM_003942.2	83	Cgc/Tgc																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544876	86544876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	39	348	0	ENST00000262426.4:c.701G>A	p.Gly234Asp	p.G234D	ENST00000262426	NM_001451.2	234	gGc/gAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213992	36213992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	81	422	0	ENST00000222270.7:c.2818G>T	p.Gly940Cys	p.G940C	ENST00000222270	NM_014727.1	940	Ggt/Tgt																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870505	40870505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	122	368	0	ENST00000428826.2:c.898C>T	p.Arg300Trp	p.R300W	ENST00000428826		300	Cgg/Tgg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128051097	128051097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	66	299	0	ENST00000285398.2:c.226C>A	p.Leu76Ile	p.L76I	ENST00000285398	NM_000122.1	76	Ctc/Atc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256773	16256773	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	26	441	0	ENST00000375759.3:c.4038G>T	p.Gln1346His	p.Q1346H	ENST00000375759	NM_015001.2	1346	caG/caT																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081539	143081539	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	64	313	0	ENST00000262992.4:c.1535A>C	p.His512Pro	p.H512P	ENST00000262992	NM_001101669.1	512	cAt/cCt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111624	56111624	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0083640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	43	275	0	ENST00000399503.3:c.224A>T	p.Glu75Val	p.E75V	ENST00000399503	NM_005921.1	75	gAg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0083654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	205	784	0	ENST00000269305.4:c.672G>C	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaC																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0083654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	38	555	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	116	664	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94068088	94068088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	31	534	0	ENST00000369303.4:c.874C>A	p.Gln292Lys	p.Q292K	ENST00000369303	NM_004440.3	292	Cag/Aag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94068103	94068103	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0083654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	31	529	0	ENST00000369303.4:c.859T>G	p.Ser287Ala	p.S287A	ENST00000369303	NM_004440.3	287	Tcc/Gcc																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127920639	127920639	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	21	446	0	ENST00000373547.4:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000373547	NM_002721.4	87	tAc/tGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0083659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	164	571	0	ENST00000346208.3:c.1300dup	p.His434ProfsTer73	p.H434Pfs*73	ENST00000346208		433	cac/caCc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717777	89717777	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs786204873		P-0083659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	10	379	0	ENST00000371953.3:c.801+1G>A		p.X267_splice	ENST00000371953	NM_000314.4	267																																																																																
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0078911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	392	567	1	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372232	55372232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1522	141	608	3	ENST00000297316.4:c.922G>A	p.Gly308Arg	p.G308R	ENST00000297316	NM_022454.3	308	Ggg/Agg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271922	18271922	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			948	246	660	2	ENST00000222254.8:c.525G>C	p.Lys175Asn	p.K175N	ENST00000222254	NM_005027.3	175	aaG/aaC																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061193	38061208	+	frameshift_variant	Frame_Shift_Del	DEL	AGCGCTTCTGGCGGCG	AGCGCTTCTGGCGGCG	GCGCTT			P-0081242-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			386	360	534	0	ENST00000250448.2:c.781_796delinsAAGCGC	p.Arg261LysfsTer57	p.R261Kfs*57	ENST00000250448	NM_004496.3	261	CGCCGCCAGAAGCGCTtc/AAGCGCtc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39741530	39741530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081242-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			243	86	454	0	ENST00000361337.2:c.1417C>T	p.Arg473Trp	p.R473W	ENST00000361337	NM_003286.2	473	Cgg/Tgg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808308	1808308	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1455074121		P-0081242-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			308	18	670	0	ENST00000260795.2:c.2066C>T	p.Thr689Met	p.T689M	ENST00000260795		689	aCg/aTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793478	18793478	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081242-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			201	73	341	0	ENST00000266497.5:c.4175A>G	p.Tyr1392Cys	p.Y1392C	ENST00000266497		1392	tAc/tGc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061136	38061248	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGGCGGCGCAAGTAGCAGCCGTTCTCGAACATGTTGCCGGAGTCCGGG	TGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGGCGGCGCAAGTAGCAGCCGTTCTCGAACATGTTGCCGGAGTCCGGG	-			P-0081242-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			685	17	467	0	ENST00000250448.2:c.741_853del	p.His247GlnfsTer8	p.H247Qfs*8	ENST00000250448	NM_004496.3	247	caCCCGGACTCCGGCAACATGTTCGAGAACGGCTGCTACTTGCGCCGCCAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAgc/cagc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627980	37627980	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081242-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			291	92	604	0	ENST00000447079.4:c.1895del	p.Leu632ProfsTer23	p.L632Pfs*23	ENST00000447079	NM_015083.1	632	cTc/cc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650905	37650906	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0081242-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			191	60	400	0	ENST00000447079.4:c.2378dup	p.Thr794HisfsTer3	p.T794Hfs*3	ENST00000447079	NM_015083.1	793	gtc/gTtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0083561-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	238	613	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0083561-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	32	489	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0083561-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	87	445	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910883	114910883	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1477809102		P-0083561-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	229	425	0	ENST00000543371.1:c.1001+1G>A		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																																
FGFR1	2260	MSKCC	GRCh37	8	38275777	38275777	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs923019674		P-0083561-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	100	507	0	ENST00000425967.3:c.1492G>A	p.Glu498Lys	p.E498K	ENST00000425967	NM_001174067.1	498	Gaa/Aaa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385257	41385257	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1293875597		P-0083561-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	39	441	1	ENST00000373198.4:c.704C>T	p.Thr235Met	p.T235M	ENST00000373198	NM_133170.3	235	aCg/aTg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18272846	18272846	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0083561-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	90	520	0	ENST00000222254.8:c.886G>T	p.Glu296Ter	p.E296*	ENST00000222254	NM_005027.3	296	Gag/Tag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163383	32163383	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083561-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	266	511	0	ENST00000375023.3:c.5843A>G	p.Asp1948Gly	p.D1948G	ENST00000375023	NM_004557.3	1948	gAc/gGc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946346	2946346	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083561-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	32	425	0	ENST00000396946.4:c.3391C>A	p.Leu1131Met	p.L1131M	ENST00000396946	NM_032415.4	1131	Ctg/Atg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533904	63533905	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0083561-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	152	490	2	ENST00000307078.5:c.1249dup	p.Ala417GlyfsTer45	p.A417Gfs*45	ENST00000307078	NM_004655.3	417	gcg/gGcg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575071	48575071	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0083561-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	124	296	0	ENST00000342988.3:c.265G>T	p.Gly89Ter	p.G89*	ENST00000342988	NM_005359.5	89	Gga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0083563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	90	381	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467870	50467870	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1483931742		P-0083563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	30	312	0	ENST00000331340.3:c.1105G>A	p.Ala369Thr	p.A369T	ENST00000331340	NM_006060.4	369	Gcc/Acc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653852	89653854	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0083563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	66	209	0	ENST00000371953.3:c.155_157del	p.Asp52del	p.D52del	ENST00000371953	NM_000314.4	50	atTGAt/att																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0083563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	92	200	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625251	69625251	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782147248		P-0083565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	40	430	0	ENST00000334134.2:c.542G>A	p.Arg181His	p.R181H	ENST00000334134	NM_005247.2	181	cGc/cAc																																																																															
MET	4233	MSKCC	GRCh37	7	116412045	116412048	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TATA	TATA	-			P-0083565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	80	374	0	ENST00000397752.3:c.3028+3_3028+6del		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41101127	41101127	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	27	405	0	ENST00000373198.4:c.1229T>C	p.Phe410Ser	p.F410S	ENST00000373198	NM_133170.3	410	tTc/tCc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082254	16082254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083568-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	70	366	0	ENST00000281043.3:c.68C>T	p.Ser23Leu	p.S23L	ENST00000281043	NM_005378.4	23	tCg/tTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881002	37881003	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTCCCCA			P-0083568-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	1884	475	0	ENST00000269571.5:c.2332_2340dup	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	-/GGCTCCCCA																																																																															
RET	5979	MSKCC	GRCh37	10	43609105	43609105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1228204486		P-0083568-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	85	523	0	ENST00000355710.3:c.1861G>A	p.Glu621Lys	p.E621K	ENST00000355710	NM_020975.4	621	Gag/Aag																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164877	36164877	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200104203		P-0083568-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	83	465	0	ENST00000300305.3:c.998C>T	p.Pro333Leu	p.P333L	ENST00000300305		333	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579405	7579417	+	frameshift_variant	Frame_Shift_Del	DEL	TGACAGGGGCCAG	TGACAGGGGCCAG	-			P-0083568-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	237	487	1	ENST00000269305.4:c.270_282del	p.Trp91LeufsTer28	p.W91Lfs*28	ENST00000269305	NM_001126112.2	90	tcCTGGCCCCTGTCA/tc																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551720	150551720	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083568-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	78	472	0	ENST00000369026.2:c.287T>C	p.Leu96Pro	p.L96P	ENST00000369026	NM_021960.4	96	cTg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0083569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	60	597	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
MET	4233	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0083569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	216	539	0	ENST00000397752.3:c.3028+2T>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
NF1	4763	MSKCC	GRCh37	17	29661948	29661948	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	44	433	0	ENST00000358273.4:c.5905C>T	p.Gln1969Ter	p.Q1969*	ENST00000358273	NM_001042492.2	1969	Caa/Taa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440894	52440894	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	25	516	0	ENST00000460680.1:c.610G>C	p.Asp204His	p.D204H	ENST00000460680	NM_004656.3	204	Gac/Cac																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366954	15366954	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0083569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	22	568	0	ENST00000263377.2:c.1672G>T	p.Glu558Ter	p.E558*	ENST00000263377	NM_058243.2	558	Gaa/Taa																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273875	18273875	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0083569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	23	574	0	ENST00000222254.8:c.1208A>T	p.Asn403Ile	p.N403I	ENST00000222254	NM_005027.3	403	aAt/aTt																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78426066	78426066	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	52	554	0	ENST00000370768.2:c.1459G>T	p.Ala487Ser	p.A487S	ENST00000370768	NM_003902.3	487	Gca/Tca																																																																															
BRCA1	672	MSKCC	GRCh37	17	41228598	41228598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	42	377	0	ENST00000357654.3:c.4391C>T	p.Pro1464Leu	p.P1464L	ENST00000357654	NM_007294.3	1464	cCt/cTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934948	9934948	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	26	413	0	ENST00000330684.3:c.1342G>C	p.Glu448Gln	p.E448Q	ENST00000330684	NM_001134407.1	448	Gag/Cag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0083570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	19	309	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
ATM	472	MSKCC	GRCh37	11	108172405	108172405	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0083570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	31	278	0	ENST00000278616.4:c.5210del	p.Leu1737Ter	p.L1737*	ENST00000278616	NM_000051.3	1736	tgT/tg																																																																															
ATM	472	MSKCC	GRCh37	11	108172413	108172414	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0083570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	32	294	0	ENST00000278616.4:c.5217_5218del	p.Ile1740PhefsTer8	p.I1740Ffs*8	ENST00000278616	NM_000051.3	1739	aAC/a																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187153	11187153	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	227	380	0	ENST00000361445.4:c.6265A>G	p.Met2089Val	p.M2089V	ENST00000361445	NM_004958.3	2089	Atg/Gtg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255141	16255142	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			734	90	599	0	ENST00000375759.3:c.2417_2418dup	p.Arg807AspfsTer3	p.R807Dfs*3	ENST00000375759	NM_015001.2	802	-/GA																																																																															
FH	2271	MSKCC	GRCh37	1	241675283	241675283	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs863224015		P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	94	368	0	ENST00000366560.3:c.539A>G	p.His180Arg	p.H180R	ENST00000366560	NM_000143.3	180	cAt/cGt																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51436084	51436084	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			699	40	422	0	ENST00000262662.1:c.49del	p.Asp17ThrfsTer2	p.D17Tfs*2	ENST00000262662		15	aGg/ag																																																																															
PGR	5241	MSKCC	GRCh37	11	100998292	100998292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	73	337	0	ENST00000325455.5:c.1510G>A	p.Ala504Thr	p.A504T	ENST00000325455	NM_001202474.3	504	Gcc/Acc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138858	64138858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	170	349	0	ENST00000334205.4:c.2225G>A	p.Arg742His	p.R742H	ENST00000334205	NM_003942.2	742	cGc/cAc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	69	412	2	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			760	110	577	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435129	110435129	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	198	590	1	ENST00000375856.3:c.3272del	p.Pro1091ArgfsTer15	p.P1091Rfs*15	ENST00000375856	NM_003749.2	1091	cCg/cg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954273	32954273	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1253685848		P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	65	373	1	ENST00000380152.3:c.9253del	p.Thr3085GlnfsTer19	p.T3085Qfs*19	ENST00000380152		3083	Aaa/aa																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	27	480	1	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
MGA	23269	MSKCC	GRCh37	15	42059170	42059170	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs756744691		P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	274	508	2	ENST00000219905.7:c.8895del	p.Thr2966ProfsTer4	p.T2966Pfs*4	ENST00000219905	NM_001164273.1	2964	Ccc/cc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639155	3639155	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777033175		P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			773	82	507	0	ENST00000294008.3:c.4484C>T	p.Ala1495Val	p.A1495V	ENST00000294008	NM_032444.2	1495	gCg/gTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351595	89351595	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	65	484	1	ENST00000301030.4:c.1355del	p.Asn452IlefsTer3	p.N452Ifs*3	ENST00000301030	NM_001256183.1	452	aAt/at																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	541	558	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533938	63533939	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	79	492	0	ENST00000307078.5:c.1214_1215dup	p.Gly406ArgfsTer53	p.G406Rfs*53	ENST00000307078	NM_004655.3	405	-/AG																																																																															
BCL2	596	MSKCC	GRCh37	18	60985713	60985713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	215	434	0	ENST00000333681.4:c.187C>T	p.Arg63Trp	p.R63W	ENST00000333681		63	Cgg/Tgg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349555	15349555	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	190	429	0	ENST00000263377.2:c.4019C>T	p.Ala1340Val	p.A1340V	ENST00000263377	NM_058243.2	1340	gCc/gTc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18971687	18971687	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1273688735		P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	28	422	1	ENST00000262803.5:c.2353G>A	p.Ala785Thr	p.A785T	ENST00000262803	NM_002911.3	785	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214067	36214067	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	237	518	0	ENST00000222270.7:c.2893C>T	p.Arg965Ter	p.R965*	ENST00000222270	NM_014727.1	965	Cga/Tga																																																																															
AXL	558	MSKCC	GRCh37	19	41758348	41758348	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs762510681		P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	206	399	0	ENST00000301178.4:c.1804G>A	p.Gly602Ser	p.G602S	ENST00000301178	NM_021913.4	602	Ggt/Agt																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	277	555	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403254	213403254	+	frameshift_variant,start_lost,start_retained_variant	Frame_Shift_Del	DEL	T	T	-			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	182	393	2	ENST00000342788.4:c.1del	p.Met1?	p.M1?	ENST00000342788	NM_005235.2	1	Atg/tg																																																																															
ALK	238	MSKCC	GRCh37	2	30142982	30142982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1229550831		P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	236	565	0	ENST00000389048.3:c.544G>A	p.Glu182Lys	p.E182K	ENST00000389048	NM_004304.4	182	Gaa/Aaa																																																																															
ALK	238	MSKCC	GRCh37	2	30143051	30143051	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367875912		P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	218	545	0	ENST00000389048.3:c.475G>A	p.Gly159Arg	p.G159R	ENST00000389048	NM_004304.4	159	Ggg/Agg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	191	492	0	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12641190	12641190	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	61	325	0	ENST00000251849.4:c.1108G>A	p.Gly370Arg	p.G370R	ENST00000251849	NM_002880.3	370	Gga/Aga																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138426123	138426123	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1217537873		P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	55	263	0	ENST00000289153.2:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000289153	NM_006219.2	470	Gaa/Aaa																																																																															
MST1	4485	MSKCC	GRCh37	3	49722906	49722906	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	14	117	0	ENST00000449682.2:c.1421del	p.Pro474GlnfsTer52	p.P474Qfs*52	ENST00000449682	NM_020998.3	474	cCa/ca																																																																															
TET2	54790	MSKCC	GRCh37	4	106197506	106197506	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	135	459	0	ENST00000380013.4:c.5844del	p.Val1949Ter	p.V1949*	ENST00000380013	NM_001127208.2	1947	Aaa/aa																																																																															
REST	5978	MSKCC	GRCh37	4	57796750	57796750	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1199978831		P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	146	573	1	ENST00000309042.7:c.1732del	p.Ser578ValfsTer7	p.S578Vfs*7	ENST00000309042	NM_005612.4	576	Aaa/aa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048145	180048145	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758234191		P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	81	537	0	ENST00000261937.6:c.2128G>A	p.Val710Met	p.V710M	ENST00000261937	NM_182925.4	710	Gtg/Atg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048638	180048638	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	122	479	0	ENST00000261937.6:c.1924del	p.Arg642AlafsTer43	p.R642Afs*43	ENST00000261937	NM_182925.4	642	Cgc/gc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177644	56177644	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149242419		P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	249	471	0	ENST00000399503.3:c.2617G>A	p.Val873Ile	p.V873I	ENST00000399503	NM_005921.1	873	Gta/Ata																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	97	350	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821054	32821055	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	41	547	0	ENST00000354258.4:c.539dup	p.Ala181SerfsTer7	p.A181Sfs*7	ENST00000354258	NM_000593.5	180	gga/ggGa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	207	352	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	39	420	1	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																															
ABL1	25	MSKCC	GRCh37	9	133760927	133760927	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	209	429	0	ENST00000318560.5:c.3250C>T	p.Arg1084Ter	p.R1084*	ENST00000318560	NM_005157.4	1084	Cga/Tga																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395054	139395054	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	130	388	0	ENST00000277541.6:c.5884C>A	p.Arg1962Ser	p.R1962S	ENST00000277541	NM_017617.3	1962	Cgc/Agc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98218682	98218682	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1409913416		P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	98	395	0	ENST00000331920.6:c.3182C>T	p.Ala1061Val	p.A1061V	ENST00000331920	NM_000264.3	1061	gCg/gTg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	273	614	0	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
AR	367	MSKCC	GRCh37	X	66941680	66941680	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137852572		P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	187	404	1	ENST00000374690.3:c.2324G>A	p.Arg775His	p.R775H	ENST00000374690	NM_000044.3	775	cGc/cAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76938088	76938089	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	28	419	0	ENST00000373344.5:c.2658_2659dup	p.Thr887ArgfsTer19	p.T887Rfs*19	ENST00000373344	NM_000489.3	887	act/aGAct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106942	27106942	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	208	559	0	ENST00000324856.7:c.6553A>G	p.Ile2185Val	p.I2185V	ENST00000324856	NM_006015.4	2185	Att/Gtt																																																																															
JUN	3725	MSKCC	GRCh37	1	59248412	59248412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	292	524	1	ENST00000371222.2:c.331G>A	p.Ala111Thr	p.A111T	ENST00000371222	NM_002228.3	111	Gcc/Acc																																																																															
RET	5979	MSKCC	GRCh37	10	43572759	43572759	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	20	230	0	ENST00000355710.3:c.53T>C	p.Leu18Pro	p.L18P	ENST00000355710	NM_020975.4	18	cTg/cCg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344558	118344558	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	237	573	0	ENST00000534358.1:c.2684A>T	p.Lys895Met	p.K895M	ENST00000534358	NM_005933.3	895	aAg/aTg																																																																															
WT1	7490	MSKCC	GRCh37	11	32456726	32456726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	160	343	0	ENST00000332351.3:c.166C>T	p.Arg56Trp	p.R56W	ENST00000332351	NM_024426.4	56	Cgg/Tgg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575112	64575112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	185	527	0	ENST00000337652.1:c.710G>A	p.Arg237His	p.R237H	ENST00000337652	NM_130803.2	237	cGc/cAc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200242	67200242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	147	546	0	ENST00000312629.5:c.550C>A	p.His184Asn	p.H184N	ENST00000312629	NM_003952.2	184	Cat/Aat																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67201718	67201718	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	183	532	0	ENST00000312629.5:c.1019del	p.Arg340LeufsTer16	p.R340Lfs*16	ENST00000312629	NM_003952.2	340	cGt/ct																																																																															
SETD8	387893	MSKCC	GRCh37	12	123874022	123874022	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1164517572		P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	182	320	0	ENST00000330479.4:c.53C>T	p.Ala18Val	p.A18V	ENST00000330479	NM_020382.3	18	gCg/gTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18762555	18762555	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	53	298	0	ENST00000266497.5:c.4055del	p.Asn1352ThrfsTer45	p.N1352Tfs*45	ENST00000266497		1351	Aaa/aa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246234	46246234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	122	493	0	ENST00000334344.6:c.4328G>A	p.Ser1443Asn	p.S1443N	ENST00000334344	NM_152641.2	1443	aGt/aAt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778660	3778660	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	152	567	0	ENST00000262367.5:c.6388del	p.Gln2130SerfsTer13	p.Q2130Sfs*13	ENST00000262367	NM_004380.2	2130	Cag/ag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827898	72827898	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	243	447	0	ENST00000268489.5:c.8683G>T	p.Val2895Phe	p.V2895F	ENST00000268489	NM_006885.3	2895	Gtc/Ttc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30325784	30325784	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	60	319	0	ENST00000322652.5:c.1982T>C	p.Val661Ala	p.V661A	ENST00000322652	NM_015355.2	661	gTc/gCc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15295154	15295154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	108	453	0	ENST00000263388.2:c.2518G>T	p.Gly840Trp	p.G840W	ENST00000263388	NM_000435.2	840	Ggg/Tgg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349896	15349898	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	64	436	0	ENST00000263377.2:c.3754_3756del	p.Lys1252del	p.K1252del	ENST00000263377	NM_058243.2	1252	AAG/-																																																																															
PMS1	5378	MSKCC	GRCh37	2	190742031	190742031	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	54	338	0	ENST00000441310.2:c.2668A>G	p.Met890Val	p.M890V	ENST00000441310	NM_000534.4	890	Atg/Gtg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607703	46607704	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	219	516	1	ENST00000263734.3:c.1898dup	p.Arg634GlnfsTer82	p.R634Qfs*82	ENST00000263734	NM_001430.4	631	atg/atGg																																																																															
ATR	545	MSKCC	GRCh37	3	142279132	142279132	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	72	345	0	ENST00000350721.4:c.1514T>C	p.Val505Ala	p.V505A	ENST00000350721	NM_001184.3	505	gTt/gCt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181431095	181431095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	87	424	0	ENST00000325404.1:c.947A>G	p.His316Arg	p.H316R	ENST00000325404	NM_003106.3	316	cAc/cGc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713478	30713478	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	183	595	0	ENST00000359013.4:c.878C>G	p.Ser293Ter	p.S293*	ENST00000359013	NM_001024847.2	293	tCa/tGa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528001	157528007	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCCAA	AAGCCAA	-			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	259	516	0	ENST00000346085.5:c.5729_5735del	p.Ala1910ValfsTer62	p.A1910Vfs*62	ENST00000346085	NM_020732.3	1909	cAAGCCAAa/ca																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679896	30679896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			771	67	596	0	ENST00000376406.3:c.1823C>T	p.Ala608Val	p.A608V	ENST00000376406	NM_014641.2	608	gCa/gTa																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239645	31239645	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			74	15	77	0	ENST00000376228.5:c.74G>A	p.Cys25Tyr	p.C25Y	ENST00000376228	NM_002117.5	25	tGc/tAc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372163	55372163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	240	492	0	ENST00000297316.4:c.853G>A	p.Gly285Ser	p.G285S	ENST00000297316	NM_022454.3	285	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0083580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	357	476	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0083580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	249	461	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244235	153244235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	282	513	1	ENST00000281708.4:c.1922C>T	p.Ser641Leu	p.S641L	ENST00000281708	NM_033632.3	641	tCa/tTa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73350160	73350160	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0083580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	40	374	0	ENST00000377767.4:c.725A>C	p.Lys242Thr	p.K242T	ENST00000377767	NM_014953.3	242	aAa/aCa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056652	26056652	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778314704		P-0083580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	142	411	0	ENST00000343677.2:c.5C>T	p.Ser2Phe	p.S2F	ENST00000343677	NM_005319.3	2	tCc/tTc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162902	47162902	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0083580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	319	480	0	ENST00000409792.3:c.3224A>T	p.Asn1075Ile	p.N1075I	ENST00000409792	NM_014159.6	1075	aAt/aTt																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166094	118166094	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0083508-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	37	522	0	ENST00000369448.3:c.604del	p.Ile202SerfsTer9	p.I202Sfs*9	ENST00000369448	NM_017709.3	202	Atc/tc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0083510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	23	256	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720699	89720699	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs786202840		P-0083510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			55	20	47	0	ENST00000371953.3:c.850G>T	p.Glu284Ter	p.E284*	ENST00000371953	NM_000314.4	284	Gag/Tag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16042449	16042449	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	17	267	0	ENST00000268712.3:c.1225G>C	p.Asp409His	p.D409H	ENST00000268712	NM_006311.3	409	Gat/Cat																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16042443	16042443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	18	254	0	ENST00000268712.3:c.1231G>A	p.Glu411Lys	p.E411K	ENST00000268712	NM_006311.3	411	Gaa/Aaa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016658	12016658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	39	313	0	ENST00000353533.5:c.794G>A	p.Gly265Asp	p.G265D	ENST00000353533	NM_003010.3	265	gGc/gAc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082781-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			604	127	418	0	ENST00000397062.3:c.101G>C	p.Arg34Pro	p.R34P	ENST00000397062	NM_006164.4	34	cGa/cCa																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439730	51439730	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0082781-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			702	128	486	0	ENST00000262662.1:c.295G>T	p.Glu99Ter	p.E99*	ENST00000262662		99	Gag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1219321	1219321	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0082781-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			406	137	392	0	ENST00000326873.7:c.375-2A>C		p.X125_splice	ENST00000326873	NM_000455.4	125																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66231763	66231763	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082781-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			215	44	352	0	ENST00000273854.3:c.1937G>T	p.Gly646Val	p.G646V	ENST00000273854	NM_004439.5	646	gGa/gTa																																																																															
HGF	3082	MSKCC	GRCh37	7	81381534	81381534	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082781-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			447	91	422	0	ENST00000222390.5:c.527A>G	p.Tyr176Cys	p.Y176C	ENST00000222390	NM_000601.4	176	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0082781-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			283	131	324	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732409	74732409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082781-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			858	164	534	0	ENST00000359995.5:c.500G>T	p.Arg167Leu	p.R167L	ENST00000359995	NM_001195427.1	167	cGa/cTa																																																																															
HGF	3082	MSKCC	GRCh37	7	81358985	81358985	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082781-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			479	99	390	0	ENST00000222390.5:c.976T>C	p.Cys326Arg	p.C326R	ENST00000222390	NM_000601.4	326	Tgt/Cgt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144051	11144051	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0082781-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			533	140	522	0	ENST00000344626.4:c.3632A>T	p.Glu1211Val	p.E1211V	ENST00000344626	NM_003072.3	1211	gAg/gTg																																																																															
KIT	3815	MSKCC	GRCh37	4	55595603	55595603	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs780329057		P-0082781-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	28	317	0	ENST00000288135.5:c.2093C>G	p.Ala698Gly	p.A698G	ENST00000288135	NM_000222.2	698	gCa/gGa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28602363	28602364	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0082781-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			474	100	390	0	ENST00000241453.7:c.2004_2005delinsTT	p.Gly669Ter	p.G669*	ENST00000241453	NM_004119.2	668	ctGGga/ctTTga																																																																															
CDH1	999	MSKCC	GRCh37	16	68772221	68772221	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121964876		P-0082781-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			421	117	357	0	ENST00000261769.5:c.70G>T	p.Glu24Ter	p.E24*	ENST00000261769	NM_004360.3	24	Gag/Tag																																																																															
FLT1	2321	MSKCC	GRCh37	13	28903843	28903843	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0082781-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			564	95	457	0	ENST00000282397.4:c.2616C>A	p.Tyr872Ter	p.Y872*	ENST00000282397	NM_002019.4	872	taC/taA																																																																															
MPL	4352	MSKCC	GRCh37	1	43805735	43805735	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082781-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			618	88	491	0	ENST00000372470.3:c.793del	p.Leu265SerfsTer12	p.L265Sfs*12	ENST00000372470	NM_005373.2	264	tCc/tc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943815	9943815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082781-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			539	59	441	0	ENST00000330684.3:c.1126G>T	p.Gly376Cys	p.G376C	ENST00000330684	NM_001134407.1	376	Ggc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0083399-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			118	76	308	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
KDR	3791	MSKCC	GRCh37	4	55976723	55976723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083399-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			129	29	303	1	ENST00000263923.4:c.1102G>A	p.Gly368Arg	p.G368R	ENST00000263923	NM_002253.2	368	Gga/Aga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554136	63554136	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083399-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			334	157	448	0	ENST00000307078.5:c.603del	p.Ser202ValfsTer9	p.S202Vfs*9	ENST00000307078	NM_004655.3	201	agG/ag																																																																															
APC	324	MSKCC	GRCh37	5	112176863	112176863	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083440-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	39	399	0	ENST00000257430.4:c.5572C>T	p.Arg1858Ter	p.R1858*	ENST00000257430	NM_000038.5	1858	Cga/Tga																																																																															
MSI2	124540	MSKCC	GRCh37	17	55752461	55752461	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083440-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	44	310	0	ENST00000284073.2:c.919G>T	p.Gly307Cys	p.G307C	ENST00000284073	NM_138962.2	307	Ggc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398280	25398281	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0083440-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	29	287	0	ENST00000256078.4:c.38_39delinsAA	p.Gly13Glu	p.G13E	ENST00000256078	NM_033360.2	13	gGC/gAA																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430330	78430330	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0083440-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	30	293	0	ENST00000370768.2:c.837+1G>T		p.X279_splice	ENST00000370768	NM_003902.3	279																																																																																
FLT3	2322	MSKCC	GRCh37	13	28623809	28623809	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083440-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	44	400	0	ENST00000241453.7:c.845G>T	p.Gly282Val	p.G282V	ENST00000241453	NM_004119.2	282	gGg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578462	7578465	+	frameshift_variant	Frame_Shift_Del	DEL	GCGG	GCGG	-			P-0083440-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	44	424	0	ENST00000269305.4:c.465_468del	p.Arg156SerfsTer13	p.R156Sfs*13	ENST00000269305	NM_001126112.2	155	acCCGC/ac																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128038204	128038204	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs115481013		P-0083442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	111	338	0	ENST00000285398.2:c.1346A>G	p.Lys449Arg	p.K449R	ENST00000285398	NM_000122.1	449	aAg/aGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786204041		P-0083442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	77	498	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0083443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	74	426	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591925	48591925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	38	409	0	ENST00000342988.3:c.1088G>T	p.Cys363Phe	p.C363F	ENST00000342988	NM_005359.5	363	tGt/tTt																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793431	242793431	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376257658		P-0083443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	26	376	0	ENST00000334409.5:c.646G>A	p.Val216Met	p.V216M	ENST00000334409	NM_005018.2	216	Gtg/Atg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48586253	48586254	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0083443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	18	266	0	ENST00000342988.3:c.924dup	p.Ala309CysfsTer13	p.A309Cfs*13	ENST00000342988	NM_005359.5	308	ctt/cTtt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0083443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	52	237	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120433	70120433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	45	461	0	ENST00000245479.2:c.1435C>T	p.Pro479Ser	p.P479S	ENST00000245479	NM_000346.3	479	Ccc/Tcc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0083443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	118	376	0	ENST00000304494.5:c.233dup	p.Thr79HisfsTer41	p.T79Hfs*41	ENST00000304494	NM_000077.4	78	ctc/ctTc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135403	30135403	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0083443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	41	297	0	ENST00000331968.5:c.415T>A	p.Phe139Ile	p.F139I	ENST00000331968	NM_002742.2	139	Ttt/Att																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0083444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	59	361	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0083444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	48	242	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993506	72993506	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	32	371	0	ENST00000268489.5:c.539A>G	p.Lys180Arg	p.K180R	ENST00000268489	NM_006885.3	180	aAg/aGg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742462	17742462	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	97	315	0	ENST00000250003.3:c.644G>C	p.Gly215Ala	p.G215A	ENST00000250003	NM_002478.4	215	gGc/gCc																																																																															
GNB1	2782	MSKCC	GRCh37	1	1735887	1735887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	81	319	0	ENST00000378609.4:c.401G>A	p.Arg134His	p.R134H	ENST00000378609	NM_002074.3	134	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578185	7578186	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CTCA			P-0083447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	234	371	0	ENST00000269305.4:c.660_663dup	p.Pro222Ter	p.P222*	ENST00000269305	NM_001126112.2	221	-/TGAG																																																																															
APC	324	MSKCC	GRCh37	5	112175352	112175361	+	frameshift_variant	Frame_Shift_Del	DEL	TTTCTTCAGG	TTTCTTCAGG	-			P-0083447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	152	330	0	ENST00000257430.4:c.4061_4070del	p.Phe1354Ter	p.F1354*	ENST00000257430	NM_000038.5	1354	tTTTCTTCAGGa/ta																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285698	46285698	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	56	375	0	ENST00000334344.6:c.5058G>T	p.Leu1686Phe	p.L1686F	ENST00000334344	NM_152641.2	1686	ttG/ttT																																																																															
AR	367	MSKCC	GRCh37	X	66941771	66941771	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	178	171	0	ENST00000374690.3:c.2415C>A	p.Phe805Leu	p.F805L	ENST00000374690	NM_000044.3	805	ttC/ttA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0083470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	602	415	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245456	153245456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	305	335	0	ENST00000281708.4:c.1735G>A	p.Gly579Arg	p.G579R	ENST00000281708	NM_033632.3	579	Ggg/Agg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0083470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	318	437	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0083493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	50	476	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0083493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	111	541	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0083500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	10	248	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs149680468		P-0083500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	32	436	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670615	134670615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	51	474	0	ENST00000398015.3:c.526G>T	p.Ala176Ser	p.A176S	ENST00000398015	NM_004441.4	176	Gct/Tct																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5218521	5218521	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772880114		P-0083500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	30	509	0	ENST00000357368.4:c.3958C>T	p.Arg1320Cys	p.R1320C	ENST00000357368	NM_002850.3	1320	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112177397	112177397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	42	475	0	ENST00000257430.4:c.6106G>A	p.Asp2036Asn	p.D2036N	ENST00000257430	NM_000038.5	2036	Gat/Aat																																																																															
AURKA	6790	MSKCC	GRCh37	20	54959374	54959374	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	18	281	0	ENST00000312783.6:c.326A>G	p.Asn109Ser	p.N109S	ENST00000312783	NM_198436.1	109	aAt/aGt																																																																															
APC	324	MSKCC	GRCh37	5	112175182	112175182	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0083503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	453	543	0	ENST00000257430.4:c.3892del	p.Ser1298LeufsTer7	p.S1298Lfs*7	ENST00000257430	NM_000038.5	1297	gaT/ga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480468	89480468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	267	496	0	ENST00000336596.2:c.2305C>T	p.Arg769Cys	p.R769C	ENST00000336596	NM_005233.5	769	Cgt/Tgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47035979	47035979	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0083503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			94	309	289	0	ENST00000329236.7:c.426C>A	p.Cys142Ter	p.C142*	ENST00000329236	NM_001204466.1	142	tgC/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0083503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	274	362	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TEK	7010	MSKCC	GRCh37	9	27168496	27168496	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	215	416	0	ENST00000380036.4:c.368C>G	p.Ser123Cys	p.S123C	ENST00000380036	NM_000459.3	123	tCc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112177290	112177290	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	147	537	0	ENST00000257430.4:c.5999G>C	p.Ser2000Thr	p.S2000T	ENST00000257430	NM_000038.5	2000	aGt/aCt																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445774	29445774	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083523-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	65	444	0	ENST00000544604.2:c.1606del	p.Arg536AlafsTer34	p.R536Afs*34	ENST00000544604	NM_001206998.1	535	caC/ca																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43746238	43746238	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083523-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	53	475	0	ENST00000523873.1:c.357G>C	p.Glu119Asp	p.E119D	ENST00000523873		119	gaG/gaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0078178-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			443	28	193	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593466	48593466	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1064796102		P-0078178-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			528	53	258	0	ENST00000342988.3:c.1217C>T	p.Ala406Val	p.A406V	ENST00000342988	NM_005359.5	406	gCg/gTg																																																																															
AR	367	MSKCC	GRCh37	X	66905951	66905951	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078178-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			564	46	278	0	ENST00000374690.3:c.1868C>A	p.Ala623Glu	p.A623E	ENST00000374690	NM_000044.3	623	gCa/gAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0081244-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			399	73	312	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244612	41244612	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80356985		P-0081244-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			407	36	322	1	ENST00000357654.3:c.2936G>A	p.Arg979His	p.R979H	ENST00000357654	NM_007294.3	979	cGt/cAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044470	47044470	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081244-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	53	360	0	ENST00000329236.7:c.1734del	p.Glu578AspfsTer48	p.E578Dfs*48	ENST00000329236	NM_001204466.1	578	gAa/ga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913389		P-0083352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	97	367	1	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7579348	7579352	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGC	GAAGC	-			P-0083352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	112	309	0	ENST00000269305.4:c.335_339del	p.Gly112ValfsTer35	p.G112Vfs*35	ENST00000269305	NM_001126112.2	112	gGCTTC/g																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602620	10602620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	73	362	0	ENST00000171111.5:c.958C>T	p.Arg320Trp	p.R320W	ENST00000171111	NM_203500.1	320	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420213	49420213	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267607237		P-0083352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			661	69	390	0	ENST00000301067.7:c.15536G>A	p.Arg5179His	p.R5179H	ENST00000301067	NM_003482.3	5179	cGt/cAt																																																																															
PHF6	84295	MSKCC	GRCh37	X	133551246	133551246	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	44	199	0	ENST00000332070.3:c.882A>G	p.Ile294Met	p.I294M	ENST00000332070	NM_032458.2	294	atA/atG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424780	49424780	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0083352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	36	316	0	ENST00000301067.7:c.13567A>T	p.Lys4523Ter	p.K4523*	ENST00000301067	NM_003482.3	4523	Aag/Tag																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4123794	4123794	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1414051360		P-0083352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	43	270	0	ENST00000262948.5:c.79G>A	p.Glu27Lys	p.E27K	ENST00000262948	NM_030662.3	27	Gag/Aag																																																																															
ATRX	546	MSKCC	GRCh37	X	76939771	76939771	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	55	305	0	ENST00000373344.5:c.977G>T	p.Gly326Val	p.G326V	ENST00000373344	NM_000489.3	326	gGa/gTa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68950394	68950394	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0083352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	52	238	1	ENST00000288368.4:c.706G>T	p.Gly236Trp	p.G236W	ENST00000288368	NM_024870.2	236	Ggg/Tgg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165998	47165998	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	60	280	1	ENST00000409792.3:c.128G>T	p.Gly43Val	p.G43V	ENST00000409792	NM_014159.6	43	gGa/gTa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259016	89259016	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0083352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	59	204	0	ENST00000336596.2:c.160G>T	p.Glu54Ter	p.E54*	ENST00000336596	NM_005233.5	54	Gag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0083353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	76	254	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0083353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	96	332	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249091	55249091	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519861		P-0083353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	38	384	0	ENST00000275493.2:c.2389T>A	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	Tgc/Agc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581156	48581169	+	frameshift_variant	Frame_Shift_Del	DEL	TCAAGTATGATGGT	TCAAGTATGATGGT	-			P-0083353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	76	200	0	ENST00000342988.3:c.460_473del	p.Ser154GlufsTer3	p.S154Efs*3	ENST00000342988	NM_005359.5	154	TCAAGTATGATGGTg/g																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31495419	31495419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	107	274	0	ENST00000344624.3:c.1729A>G	p.Thr577Ala	p.T577A	ENST00000344624		577	Aca/Gca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8331652	8331652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	72	265	0	ENST00000356435.5:c.5464G>T	p.Asp1822Tyr	p.D1822Y	ENST00000356435		1822	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0083356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	64	214	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038761	47038773	+	frameshift_variant	Frame_Shift_Del	DEL	GACACTGCCACTG	GACACTGCCACTG	-			P-0083356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	78	279	0	ENST00000329236.7:c.538_550del	p.Thr180ValfsTer5	p.T180Vfs*5	ENST00000329236	NM_001204466.1	179	caGACACTGCCACTG/ca																																																																															
MED12	9968	MSKCC	GRCh37	X	70340878	70340878	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	62	345	0	ENST00000374080.3:c.611A>G	p.Tyr204Cys	p.Y204C	ENST00000374080		204	tAc/tGc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50784087	50784087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1209659369		P-0083356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	78	255	0	ENST00000398568.2:c.478G>A	p.Gly160Arg	p.G160R	ENST00000398568	NM_001042412.1	160	Gga/Aga																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100010	30100010	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0083356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	60	298	0	ENST00000331968.5:c.1610A>T	p.Gln537Leu	p.Q537L	ENST00000331968	NM_002742.2	537	cAg/cTg																																																																															
GAB1	2549	MSKCC	GRCh37	4	144359630	144359630	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0083356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	83	326	0	ENST00000262994.4:c.1072G>T	p.Glu358Ter	p.E358*	ENST00000262994	NM_002039.3	358	Gaa/Taa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44514642	44514642	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0083356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	84	293	0	ENST00000291552.4:c.514A>C	p.Met172Leu	p.M172L	ENST00000291552	NM_006758.2	172	Atg/Ctg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0083421-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	116	232	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40456572	40456572	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083421-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	112	303	0	ENST00000345506.4:c.1282G>C	p.Asp428His	p.D428H	ENST00000345506	NM_003152.3	428	Gac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587780075		P-0083424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	45	398	0	ENST00000269305.4:c.800G>A	p.Arg267Gln	p.R267Q	ENST00000269305	NM_001126112.2	267	cGg/cAg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125317	47125317	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0083424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	59	373	0	ENST00000409792.3:c.5953G>T	p.Glu1985Ter	p.E1985*	ENST00000409792	NM_014159.6	1985	Gag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81372734	81372734	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs771889279		P-0083424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	56	366	0	ENST00000222390.5:c.800C>A	p.Pro267Gln	p.P267Q	ENST00000222390	NM_000601.4	267	cCg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0083424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	46	275	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37038192	37038193	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0083424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	38	369	0	ENST00000231790.2:c.199_200delinsTT	p.Gly67Leu	p.G67L	ENST00000231790	NM_000249.3	67	GGg/TTg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101908792	101908792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	56	331	2	ENST00000374994.4:c.1156G>A	p.Asp386Asn	p.D386N	ENST00000374994	NM_004612.2	386	Gat/Aat																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212289014	212289014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	53	292	1	ENST00000342788.4:c.2732G>T	p.Trp911Leu	p.W911L	ENST00000342788	NM_005235.2	911	tGg/tTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865279	57865279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	49	371	0	ENST00000228682.2:c.2756C>A	p.Pro919His	p.P919H	ENST00000228682	NM_005269.2	919	cCc/cAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518093	8518093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	58	364	0	ENST00000356435.5:c.1298C>T	p.Thr433Ile	p.T433I	ENST00000356435		433	aCc/aTc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112004	115112004	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	49	462	0	ENST00000257566.3:c.1736C>G	p.Pro579Arg	p.P579R	ENST00000257566	NM_016569.3	579	cCc/cGc																																																																															
HGF	3082	MSKCC	GRCh37	7	81339541	81339541	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	52	297	0	ENST00000222390.5:c.1463C>G	p.Ala488Gly	p.A488G	ENST00000222390	NM_000601.4	488	gCc/gGc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245099	53245099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			661	51	379	0	ENST00000375401.3:c.841G>A	p.Val281Met	p.V281M	ENST00000375401	NM_004187.3	281	Gtg/Atg																																																																															
ATM	472	MSKCC	GRCh37	11	108124734	108124734	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	58	360	0	ENST00000278616.4:c.2092T>C	p.Ser698Pro	p.S698P	ENST00000278616	NM_000051.3	698	Tca/Cca																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31504700	31504700	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	167	329	0	ENST00000344624.3:c.1630C>A	p.Arg544Ser	p.R544S	ENST00000344624		544	Cgc/Agc																																																																															
XIAP	331	MSKCC	GRCh37	X	123019947	123019947	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	63	443	0	ENST00000355640.3:c.435G>T	p.Gln145His	p.Q145H	ENST00000355640		145	caG/caT																																																																															
ATRX	546	MSKCC	GRCh37	X	76845409	76845409	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0083424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	36	284	0	ENST00000373344.5:c.6112C>A	p.Leu2038Ile	p.L2038I	ENST00000373344	NM_000489.3	2038	Ctt/Att																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308362	30308362	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0083424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	59	412	0	ENST00000262643.3:c.376A>T	p.Thr126Ser	p.T126S	ENST00000262643	NM_001238.2	126	Aca/Tca																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222436	53222436	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			708	58	434	0	ENST00000375401.3:c.4396G>T	p.Gly1466Cys	p.G1466C	ENST00000375401	NM_004187.3	1466	Ggt/Tgt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119768	70119768	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	61	312	0	ENST00000245479.2:c.770G>T	p.Arg257Leu	p.R257L	ENST00000245479	NM_000346.3	257	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0083458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	64	63	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0083458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	18	119	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266916	41266916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			828	102	115	0	ENST00000349496.5:c.587C>T	p.Ser196Phe	p.S196F	ENST00000349496	NM_001904.3	196	tCt/tTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584514	48584514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			204	242	398	0	ENST00000342988.3:c.692del	p.Gly231AlafsTer10	p.G231Afs*10	ENST00000342988	NM_005359.5	229	ctG/ct																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78796929	78796929	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			348	211	345	0	ENST00000306801.3:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000306801	NM_020761.2	348	Cga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89462302	89462302	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1463230067		P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			257	181	354	0	ENST00000336596.2:c.1774G>T	p.Gly592Cys	p.G592C	ENST00000336596	NM_005233.5	592	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579503	7579503	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			282	268	482	0	ENST00000269305.4:c.184G>T	p.Glu62Ter	p.E62*	ENST00000269305	NM_001126112.2	62	Gaa/Taa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974759	21974759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			213	306	396	0	ENST00000304494.5:c.68G>T	p.Gly23Val	p.G23V	ENST00000304494	NM_000077.4	23	gGt/gTt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067281	37067281	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63750483		P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			439	101	395	0	ENST00000231790.2:c.1192C>T	p.Gln398Ter	p.Q398*	ENST00000231790	NM_000249.3	398	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			93	202	272	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540308	23540308	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			219	231	404	0	ENST00000380871.4:c.95A>T	p.Gln32Leu	p.Q32L	ENST00000380871	NM_006167.3	32	cAg/cTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376653	8376653	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs760081989		P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			396	88	346	0	ENST00000356435.5:c.4460C>A	p.Thr1487Asn	p.T1487N	ENST00000356435		1487	aCt/aAt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434369	121434369	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766036978		P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			431	368	371	0	ENST00000257555.6:c.1133C>T	p.Pro378Leu	p.P378L	ENST00000257555		378	cCc/cTc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610412	81610412	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			336	225	455	0	ENST00000298171.2:c.2010C>A	p.Asn670Lys	p.N670K	ENST00000298171	NM_000369.2	670	aaC/aaA																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991505	72991505	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			477	108	387	0	ENST00000268489.5:c.2540A>T	p.His847Leu	p.H847L	ENST00000268489	NM_006885.3	847	cAc/cTc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664469	138664469	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			271	47	229	0	ENST00000330315.3:c.1096A>G	p.Lys366Glu	p.K366E	ENST00000330315	NM_023067.3	366	Aag/Gag																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156848918	156848918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			466	189	403	0	ENST00000524377.1:c.1810C>A	p.His604Asn	p.H604N	ENST00000524377	NM_002529.3	604	Cat/Aat																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682417	37682417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			512	245	456	0	ENST00000447079.4:c.3608C>T	p.Pro1203Leu	p.P1203L	ENST00000447079	NM_015083.1	1203	cCa/cTa																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872634	136872634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			519	120	440	0	ENST00000241393.3:c.864G>T	p.Glu288Asp	p.E288D	ENST00000241393	NM_003467.2	288	gaG/gaT																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599149	28599149	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			452	278	499	0	ENST00000253063.3:c.595G>T	p.Val199Phe	p.V199F	ENST00000253063	NM_031459.4	199	Gtc/Ttc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464391	120464391	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			298	174	352	0	ENST00000256646.2:c.5255C>G	p.Thr1752Ser	p.T1752S	ENST00000256646	NM_024408.3	1752	aCt/aGt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193104583	193104583	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			355	130	345	0	ENST00000367435.3:c.370G>T	p.Val124Phe	p.V124F	ENST00000367435	NM_024529.4	124	Gtc/Ttc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131924481	131924481	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			156	178	355	0	ENST00000265335.6:c.1154G>T	p.Arg385Leu	p.R385L	ENST00000265335		385	cGt/cTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162340	47162340	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			346	257	418	0	ENST00000409792.3:c.3786C>G	p.Phe1262Leu	p.F1262L	ENST00000409792	NM_014159.6	1262	ttC/ttG																																																																															
PAK7	57144	MSKCC	GRCh37	20	9543614	9543614	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			387	125	357	0	ENST00000353224.5:c.1540C>A	p.Leu514Ile	p.L514I	ENST00000353224	NM_177990.2	514	Ctt/Att																																																																															
FANCC	2176	MSKCC	GRCh37	9	98002976	98002976	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			125	158	305	0	ENST00000289081.3:c.300A>T	p.Lys100Asn	p.K100N	ENST00000289081	NM_000136.2	100	aaA/aaT																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45651217	45651217	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1193851481		P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			365	213	420	0	ENST00000407780.3:c.808G>T	p.Ala270Ser	p.A270S	ENST00000407780	NM_001283052.1	270	Gcg/Tcg																																																																															
RAC2	5880	MSKCC	GRCh37	22	37637628	37637628	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			454	107	418	0	ENST00000249071.6:c.106G>C	p.Val36Leu	p.V36L	ENST00000249071	NM_002872.4	36	Gtg/Ctg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55151632	55151632	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066493-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			217	144	288	0	ENST00000257290.5:c.2418G>C	p.Met806Ile	p.M806I	ENST00000257290	NM_006206.4	806	atG/atC																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0083250-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	89	635	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0083250-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	393	976	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604778	48604778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767383		P-0083250-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	212	780	0	ENST00000342988.3:c.1600C>T	p.Gln534Ter	p.Q534*	ENST00000342988	NM_005359.5	534	Cag/Tag																																																																															
RAD50	10111	MSKCC	GRCh37	5	131951721	131951721	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083250-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	133	576	0	ENST00000265335.6:c.3063C>A	p.Asn1021Lys	p.N1021K	ENST00000265335		1021	aaC/aaA																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127484	55127484	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs538480165		P-0083250-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			803	135	829	0	ENST00000257290.5:c.272C>T	p.Ser91Leu	p.S91L	ENST00000257290	NM_006206.4	91	tCg/tTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440006	56440006	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083250-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	288	745	0	ENST00000407977.2:c.586del	p.Asp196IlefsTer7	p.D196Ifs*7	ENST00000407977		196	Gat/at																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51514665	51514666	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0083250-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			768	254	795	0	ENST00000260433.2:c.508dup	p.Thr170AsnfsTer12	p.T170Nfs*12	ENST00000260433		170	aca/aAca																																																																															
ERF	2077	MSKCC	GRCh37	19	42753291	42753291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	76	845	0	ENST00000222329.4:c.973C>T	p.His325Tyr	p.H325Y	ENST00000222329	NM_006494.2	325	Cac/Tac																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150922986	150922986	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	24	673	0	ENST00000271640.5:c.1633C>G	p.Pro545Ala	p.P545A	ENST00000271640	NM_001145415.1	545	Cct/Gct																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016565	12016565	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	28	335	0	ENST00000353533.5:c.701A>G	p.Asn234Ser	p.N234S	ENST00000353533	NM_003010.3	234	aAt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	21	367	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	28	173	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	43	404	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
MED12	9968	MSKCC	GRCh37	X	70347819	70347819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	18	361	0	ENST00000374080.3:c.3058G>A	p.Glu1020Lys	p.E1020K	ENST00000374080		1020	Gag/Aag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5260818	5260818	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G	rs747842113		P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	73	280	0	ENST00000357368.4:c.593G>C	p.Arg198Pro	p.R198P	ENST00000357368	NM_002850.3	198	cGa/cCa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245891	5245891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	74	312	0	ENST00000357368.4:c.884G>A	p.Arg295Gln	p.R295Q	ENST00000357368	NM_002850.3	295	cGg/cAg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112614	115112614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	23	304	0	ENST00000257566.3:c.1126G>A	p.Asp376Asn	p.D376N	ENST00000257566	NM_016569.3	376	Gac/Aac																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216947	7216947	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	54	326	0	ENST00000380728.2:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000380728		192	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	15	341	0	ENST00000342988.3:c.988G>C	p.Glu330Gln	p.E330Q	ENST00000342988	NM_005359.5	330	Gaa/Caa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156837904	156837904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41267427		P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	69	358	0	ENST00000524377.1:c.437C>T	p.Ser146Leu	p.S146L	ENST00000524377	NM_002529.3	146	tCg/tTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115462	115115462	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	83	241	0	ENST00000257566.3:c.865-1G>C		p.X289_splice	ENST00000257566	NM_016569.3	289																																																																																
SMARCB1	6598	MSKCC	GRCh37	22	24145515	24145515	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	61	328	0	ENST00000263121.7:c.534G>T	p.Glu178Asp	p.E178D	ENST00000263121	NM_003073.3	178	gaG/gaT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832614	72832614	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	39	191	0	ENST00000268489.5:c.3968-1G>C		p.X1323_splice	ENST00000268489	NM_006885.3	1323																																																																																
RAD21	5885	MSKCC	GRCh37	8	117859888	117859888	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	75	286	0	ENST00000297338.2:c.1747G>C	p.Glu583Gln	p.E583Q	ENST00000297338	NM_006265.2	583	Gag/Cag																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197881	123197881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	12	210	0	ENST00000218089.9:c.2005C>T	p.Leu669Phe	p.L669F	ENST00000218089	NM_001042749.1	669	Ctt/Ttt																																																																															
INSR	3643	MSKCC	GRCh37	19	7132309	7132309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	60	302	0	ENST00000302850.5:c.2702C>T	p.Ser901Phe	p.S901F	ENST00000302850	NM_000208.2	901	tCc/tTc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21348492	21348492	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748528782		P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	75	383	0	ENST00000215739.8:c.1549G>A	p.Glu517Lys	p.E517K	ENST00000215739	NM_006767.3	517	Gag/Aag																																																																															
DICER1	23405	MSKCC	GRCh37	14	95557630	95557630	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	9	349	0	ENST00000343455.3:c.5437G>C	p.Glu1813Gln	p.E1813Q	ENST00000343455	NM_177438.2	1813	Gag/Cag																																																																															
USP8	9101	MSKCC	GRCh37	15	50773735	50773735	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	19	292	0	ENST00000307179.4:c.1276G>C	p.Glu426Gln	p.E426Q	ENST00000307179		426	Gaa/Caa																																																																															
AKT1	207	MSKCC	GRCh37	14	105239905	105239905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	22	339	0	ENST00000349310.3:c.715C>G	p.Leu239Val	p.L239V	ENST00000349310	NM_001014432.1	239	Ctg/Gtg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131940508	131940508	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	32	235	0	ENST00000265335.6:c.2535G>C	p.Lys845Asn	p.K845N	ENST00000265335		845	aaG/aaC																																																																															
POLE	5426	MSKCC	GRCh37	12	133250280	133250280	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	92	294	0	ENST00000320574.5:c.1240G>T	p.Asp414Tyr	p.D414Y	ENST00000320574	NM_006231.2	414	Gac/Tac																																																																															
ATRX	546	MSKCC	GRCh37	X	76938141	76938141	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	20	299	0	ENST00000373344.5:c.2607G>C	p.Lys869Asn	p.K869N	ENST00000373344	NM_000489.3	869	aaG/aaC																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900459	3900459	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	29	336	0	ENST00000262367.5:c.637C>G	p.Leu213Val	p.L213V	ENST00000262367	NM_004380.2	213	Ctt/Gtt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52598199	52598199	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	31	319	0	ENST00000394830.3:c.3667G>T	p.Glu1223Ter	p.E1223*	ENST00000394830	NM_018313.4	1223	Gaa/Taa																																																																															
CDH1	999	MSKCC	GRCh37	16	68845714	68845715	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	63	312	0	ENST00000261769.5:c.961dup	p.Arg321LysfsTer29	p.R321Kfs*29	ENST00000261769	NM_004360.3	320	-/A																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223048	5223048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	26	341	0	ENST00000357368.4:c.2755G>A	p.Glu919Lys	p.E919K	ENST00000357368	NM_002850.3	919	Gag/Aag																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502756	186502756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	19	304	0	ENST00000323963.5:c.214G>A	p.Asp72Asn	p.D72N	ENST00000323963		72	Gat/Aat																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150931787	150931787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	64	353	0	ENST00000271640.5:c.2464G>T	p.Asp822Tyr	p.D822Y	ENST00000271640	NM_001145415.1	822	Gac/Tac																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231475598	231475598	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	52	263	0	ENST00000295050.7:c.305G>C	p.Arg102Thr	p.R102T	ENST00000295050	NM_032018.5	102	aGa/aCa																																																																															
ATRX	546	MSKCC	GRCh37	X	76937104	76937104	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	49	267	0	ENST00000373344.5:c.3644C>G	p.Ser1215Cys	p.S1215C	ENST00000373344	NM_000489.3	1215	tCt/tGt																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965773	18965773	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	34	327	0	ENST00000262803.5:c.1351G>C	p.Glu451Gln	p.E451Q	ENST00000262803	NM_002911.3	451	Gag/Cag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32932039	32932039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	25	306	0	ENST00000380152.3:c.7778G>A	p.Gly2593Glu	p.G2593E	ENST00000380152		2593	gGa/gAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944602	40944602	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	19	284	0	ENST00000373198.4:c.1900C>T	p.Gln634Ter	p.Q634*	ENST00000373198	NM_133170.3	634	Cag/Tag																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538366	9538366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	30	249	0	ENST00000353224.5:c.1632G>C	p.Gln544His	p.Q544H	ENST00000353224	NM_177990.2	544	caG/caC																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729160	66729160	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs778650731		P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	22	322	0	ENST00000307102.5:c.368C>G	p.Ser123Cys	p.S123C	ENST00000307102	NM_002755.3	123	tCt/tGt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376197	225376197	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	14	246	0	ENST00000264414.4:c.757G>C	p.Asp253His	p.D253H	ENST00000264414	NM_003590.4	253	Gac/Cac																																																																															
RHOA	387	MSKCC	GRCh37	3	49397743	49397743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	46	391	0	ENST00000418115.1:c.481G>A	p.Ala161Thr	p.A161T	ENST00000418115	NM_001664.2	161	Gca/Aca																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044850	47044850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	36	287	0	ENST00000329236.7:c.1942C>T	p.Arg648Ter	p.R648*	ENST00000329236	NM_001204466.1	648	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	29	406	0	ENST00000269305.4:c.799C>G	p.Arg267Gly	p.R267G	ENST00000269305	NM_001126112.2	267	Cgg/Ggg																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813396	102813396	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1316717107		P-0083290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	32	456	2	ENST00000307046.8:c.293G>A	p.Arg98Gln	p.R98Q	ENST00000307046	NM_001111285.1	98	cGg/cAg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907037	101907037	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	15	308	1	ENST00000374994.4:c.997G>C	p.Asp333His	p.D333H	ENST00000374994	NM_004612.2	333	Gat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380276	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC			P-0083290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	24	354	1	ENST00000256078.4:c.182_183delinsGG	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAA/cGG																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261326	16261326	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760319148		P-0083296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	218	535	0	ENST00000375759.3:c.8591C>T	p.Ser2864Leu	p.S2864L	ENST00000375759	NM_015001.2	2864	tCg/tTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0083296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	91	213	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68849545	68849546	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0083296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	155	582	0	ENST00000261769.5:c.1451_1452del	p.Pro484HisfsTer6	p.P484Hfs*6	ENST00000261769	NM_004360.3	483	gCC/g																																																																															
NF1	4763	MSKCC	GRCh37	17	29553704	29553704	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0083296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	133	415	0	ENST00000358273.4:c.2251+2T>A		p.X751_splice	ENST00000358273	NM_001042492.2	751																																																																																
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0083364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	207	303	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0083387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	39	133	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0083387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	36	272	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
CDH1	999	MSKCC	GRCh37	16	68844127	68844127	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780537		P-0083387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	39	244	0	ENST00000261769.5:c.715G>A	p.Gly239Arg	p.G239R	ENST00000261769	NM_004360.3	239	Ggg/Agg																																																																															
RHOA	387	MSKCC	GRCh37	3	49399972	49399972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	25	265	0	ENST00000418115.1:c.365G>A	p.Arg122Gln	p.R122Q	ENST00000418115	NM_001664.2	122	cGg/cAg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123159747	123159747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	23	187	0	ENST00000218089.9:c.102C>A	p.Asn34Lys	p.N34K	ENST00000218089	NM_001042749.1	34	aaC/aaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0083387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	75	178	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123205044	123205044	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	27	237	0	ENST00000218089.9:c.2404A>G	p.Ile802Val	p.I802V	ENST00000218089	NM_001042749.1	802	Att/Gtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730882026		P-0083427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	61	349	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0083427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	133	375	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0083427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	51	287	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0083428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	310	351	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs786201057		P-0083428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	152	356	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0083428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	205	366	0	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0083428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	168	254	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274907	41274907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	153	444	0	ENST00000349496.5:c.1157G>A	p.Arg386Lys	p.R386K	ENST00000349496	NM_001904.3	386	aGg/aAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578284	7578284	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	171	484	0	ENST00000269305.4:c.565G>T	p.Ala189Ser	p.A189S	ENST00000269305	NM_001126112.2	189	Gcc/Tcc																																																																															
EP300	2033	MSKCC	GRCh37	22	41513223	41513224	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0083428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	143	289	0	ENST00000263253.7:c.127_128del	p.Leu43ThrfsTer3	p.L43Tfs*3	ENST00000263253	NM_001429.3	43	TTa/a																																																																															
MAD2L2	10459	MSKCC	GRCh37	1	11736105	11736105	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	84	356	1	ENST00000235310.3:c.425del	p.Pro142GlnfsTer45	p.P142Qfs*45	ENST00000235310		142	cCa/ca																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729662	162729662	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1484743299		P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	94	394	0	ENST00000367921.3:c.748G>A	p.Val250Met	p.V250M	ENST00000367921	NM_006182.2	250	Gtg/Atg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981852	201981852	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	114	449	0	ENST00000359651.3:c.567del	p.Ser190ProfsTer64	p.S190Pfs*64	ENST00000359651		188	gCc/gc																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488893	231488894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs567805129		P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	185	385	0	ENST00000295050.7:c.1263dup	p.Ile422TyrfsTer11	p.I422Yfs*11	ENST00000295050	NM_032018.5	419	aat/aaTt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	154	341	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	96	410	1	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307309	118307309	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	33	153	0	ENST00000534358.1:c.86del	p.Gly29AlafsTer121	p.G29Afs*121	ENST00000534358	NM_005933.3	28	Ggg/gg																																																																															
WT1	7490	MSKCC	GRCh37	11	32410611	32410611	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749266841		P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	86	398	0	ENST00000332351.3:c.1547C>T	p.Ala516Val	p.A516V	ENST00000332351	NM_024426.4	516	gCg/gTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	79	447	1	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	73	285	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424178	49424178	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs886040960		P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	49	270	0	ENST00000301067.7:c.13884del	p.Thr4629ProfsTer11	p.T4629Pfs*11	ENST00000301067	NM_003482.3	4628	ccC/cc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	127	496	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435263	110435263	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	142	562	0	ENST00000375856.3:c.3138del	p.Ala1047ProfsTer59	p.A1047Pfs*59	ENST00000375856	NM_003749.2	1046	ccC/cc																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	265	464	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544618	86544618	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs918429732		P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	89	431	0	ENST00000262426.4:c.443G>A	p.Cys148Tyr	p.C148Y	ENST00000262426	NM_001451.2	148	tGc/tAc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	65	404	2	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
YES1	7525	MSKCC	GRCh37	18	724597	724597	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	71	265	0	ENST00000314574.4:c.1459C>T	p.Arg487Ter	p.R487*	ENST00000314574	NM_005433.3	487	Cga/Tga																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265415	10265415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	133	466	1	ENST00000340748.4:c.1631G>A	p.Arg544His	p.R544H	ENST00000340748		544	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	128	521	3	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																															
SOS1	6654	MSKCC	GRCh37	2	39222519	39222520	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	33	329	1	ENST00000402219.2:c.3090dup	p.Tyr1031IlefsTer2	p.Y1031Ifs*2	ENST00000402219	NM_005633.3	1030	-/A																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	22	213	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
MST1	4485	MSKCC	GRCh37	3	49722906	49722906	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	20	98	0	ENST00000449682.2:c.1421del	p.Pro474GlnfsTer52	p.P474Qfs*52	ENST00000449682	NM_020998.3	474	cCa/ca																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249456	153249456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	91	366	0	ENST00000281708.4:c.1322G>A	p.Arg441Gln	p.R441Q	ENST00000281708	NM_033632.3	441	cGg/cAg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1953898	1953898	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760749890		P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	101	466	0	ENST00000382895.3:c.2077G>A	p.Ala693Thr	p.A693T	ENST00000382895	NM_133330.2	693	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	73	307	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173835	112173838	+	frameshift_variant	Frame_Shift_Del	DEL	AGAT	AGAT	-			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	85	367	0	ENST00000257430.4:c.2547_2550del	p.Asp849GlufsTer11	p.D849Efs*11	ENST00000257430	NM_000038.5	848	aaAGAT/aa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	104	370	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	109	434	3	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
HGF	3082	MSKCC	GRCh37	7	81392165	81392165	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	90	303	0	ENST00000222390.5:c.112A>G	p.Thr38Ala	p.T38A	ENST00000222390	NM_000601.4	38	Aca/Gca																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462885	120462885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	93	374	0	ENST00000256646.2:c.5446G>T	p.Val1816Leu	p.V1816L	ENST00000256646	NM_024408.3	1816	Gtg/Ttg																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46509453	46509455	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	132	424	0	ENST00000262741.5:c.1276_1278del	p.Lys426del	p.K426del	ENST00000262741	NM_003629.3	426	AAG/-																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137177	64137177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	97	407	0	ENST00000334205.4:c.1609C>A	p.Leu537Met	p.L537M	ENST00000334205	NM_003942.2	537	Ctg/Atg																																																																															
CCND1	595	MSKCC	GRCh37	11	69458642	69458642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	80	380	0	ENST00000227507.2:c.457G>A	p.Ala153Thr	p.A153T	ENST00000227507	NM_053056.2	153	Gcc/Acc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641522	18641522	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	87	373	0	ENST00000266497.5:c.2521A>G	p.Ile841Val	p.I841V	ENST00000266497		841	Att/Gtt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425864	49425865	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	97	480	0	ENST00000301067.7:c.12623dup	p.Asn4208LysfsTer126	p.N4208Kfs*126	ENST00000301067	NM_003482.3	4208	aac/aaAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132610	11132610	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	120	445	0	ENST00000344626.4:c.2826G>A	p.Trp942Ter	p.W942*	ENST00000344626	NM_003072.3	942	tgG/tgA																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178129261	178129261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	32	270	0	ENST00000397062.3:c.44A>G	p.Gln15Arg	p.Q15R	ENST00000397062	NM_006164.4	15	cAg/cGg																																																																															
AURKA	6790	MSKCC	GRCh37	20	54956614	54956614	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	111	363	0	ENST00000312783.6:c.580C>A	p.Leu194Ile	p.L194I	ENST00000312783	NM_198436.1	194	Ctt/Att																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119562155	119562155	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs201010589		P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	31	397	0	ENST00000316626.5:c.1181A>G	p.His394Arg	p.H394R	ENST00000316626		394	cAt/cGt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49924887	49924887	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	118	448	0	ENST00000296474.3:c.4056T>G	p.His1352Gln	p.H1352Q	ENST00000296474	NM_002447.2	1352	caT/caG																																																																															
SDHA	6389	MSKCC	GRCh37	5	225679	225679	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	87	406	0	ENST00000264932.6:c.456+2T>A		p.X152_splice	ENST00000264932	NM_004168.2	152																																																																																
PARK2	5071	MSKCC	GRCh37	6	162622177	162622177	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1485637704		P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	96	420	0	ENST00000366898.1:c.520C>T	p.Leu174Phe	p.L174F	ENST00000366898	NM_004562.2	174	Ctc/Ttc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911083	29911083	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs199474492		P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	100	486	0	ENST00000376809.5:c.382G>T	p.Gly128Trp	p.G128W	ENST00000376809	NM_002116.7	128	Ggg/Tgg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270561	98270561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1220641430		P-0083432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	57	249	0	ENST00000331920.6:c.83C>T	p.Ala28Val	p.A28V	ENST00000331920	NM_000264.3	28	gCt/gTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0083436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	134	319	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913500		P-0083436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	108	314	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577084	7577084	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	174	421	0	ENST00000269305.4:c.854A>G	p.Glu285Gly	p.E285G	ENST00000269305	NM_001126112.2	285	gAg/gGg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210426	36210426	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750794495		P-0083436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	94	378	0	ENST00000222270.7:c.419C>T	p.Ala140Val	p.A140V	ENST00000222270	NM_014727.1	140	gCg/gTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7267401	7267401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs545565240		P-0083436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	49	364	0	ENST00000302850.5:c.607G>A	p.Gly203Arg	p.G203R	ENST00000302850	NM_000208.2	203	Ggg/Agg																																																																															
STK11	6794	MSKCC	GRCh37	19	1206988	1206988	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0083436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	86	341	0	ENST00000326873.7:c.76A>C	p.Ile26Leu	p.I26L	ENST00000326873	NM_000455.4	26	Atc/Ctc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121437362	121437362	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1025148917		P-0083436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	50	383	0	ENST00000257555.6:c.1700T>C	p.Val567Ala	p.V567A	ENST00000257555		567	gTc/gCc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202895	16202895	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0083436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	118	461	0	ENST00000375759.3:c.603T>G	p.Tyr201Ter	p.Y201*	ENST00000375759	NM_015001.2	201	taT/taG																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143988	11143988	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1196923492		P-0083436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	91	349	0	ENST00000344626.4:c.3569C>T	p.Ala1190Val	p.A1190V	ENST00000344626	NM_003072.3	1190	gCc/gTc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627149	37627149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	57	329	0	ENST00000447079.4:c.1064C>T	p.Ser355Phe	p.S355F	ENST00000447079	NM_015083.1	355	tCc/tTc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58701037	58701037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	62	340	0	ENST00000305921.3:c.628G>A	p.Ala210Thr	p.A210T	ENST00000305921	NM_003620.3	210	Gct/Act																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0083162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	178	199	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56434943	56434943	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775335997		P-0083162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	137	513	2	ENST00000407977.2:c.2194C>T	p.Arg732Cys	p.R732C	ENST00000407977		732	Cgc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42052653	42052653	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	165	386	0	ENST00000219905.7:c.7324C>G	p.Leu2442Val	p.L2442V	ENST00000219905	NM_001164273.1	2442	Ctc/Gtc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138409908	138409908	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	80	382	0	ENST00000289153.2:c.1970C>G	p.Ser657Cys	p.S657C	ENST00000289153	NM_006219.2	657	tCt/tGt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942190	17942190	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	81	355	0	ENST00000458235.1:c.2825C>A	p.Ser942Tyr	p.S942Y	ENST00000458235	NM_000215.3	942	tCc/tAc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31508834	31508834	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	65	372	0	ENST00000344624.3:c.1481C>G	p.Ser494Cys	p.S494C	ENST00000344624		494	tCt/tGt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522513	67522513	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762586316		P-0083162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	126	351	0	ENST00000274335.5:c.10G>A	p.Glu4Lys	p.E4K	ENST00000274335		4	Gag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878094	151878094	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0083162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	122	485	0	ENST00000262189.6:c.6851C>G	p.Ser2284Ter	p.S2284*	ENST00000262189	NM_170606.2	2284	tCa/tGa																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31237139	31237139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	163	427	0	ENST00000376228.5:c.1072G>A	p.Asp358Asn	p.D358N	ENST00000376228	NM_002117.5	358	Gat/Aat																																																																															
AGO2	27161	MSKCC	GRCh37	8	141542657	141542657	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	88	464	0	ENST00000220592.5:c.2329G>T	p.Asp777Tyr	p.D777Y	ENST00000220592	NM_012154.3	777	Gat/Tat																																																																															
ATM	472	MSKCC	GRCh37	11	108213968	108213968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	128	375	0	ENST00000278616.4:c.8288G>A	p.Arg2763Gln	p.R2763Q	ENST00000278616	NM_000051.3	2763	cGa/cAa																																																																															
BLM	641	MSKCC	GRCh37	15	91295069	91295069	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	150	313	0	ENST00000355112.3:c.852G>C	p.Glu284Asp	p.E284D	ENST00000355112	NM_000057.2	284	gaG/gaC																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164577	47164577	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	123	350	0	ENST00000409792.3:c.1549G>C	p.Glu517Gln	p.E517Q	ENST00000409792	NM_014159.6	517	Gaa/Caa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99149925	99149925	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	103	374	0	ENST00000074304.5:c.237C>A	p.Phe79Leu	p.F79L	ENST00000074304	NM_001134224.1	79	ttC/ttA																																																																															
MGA	23269	MSKCC	GRCh37	15	42054042	42054042	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	118	276	0	ENST00000219905.7:c.7504C>G	p.Leu2502Val	p.L2502V	ENST00000219905	NM_001164273.1	2502	Ctt/Gtt																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68290322	68290322	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	172	286	0	ENST00000487270.1:c.62G>C	p.Arg21Thr	p.R21T	ENST00000487270	NM_133509.3	21	aGa/aCa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244930	41244930	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0083162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	67	449	0	ENST00000357654.3:c.2618C>G	p.Ser873Ter	p.S873*	ENST00000357654	NM_007294.3	873	tCa/tGa																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2039651	2039651	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	114	508	0	ENST00000349721.2:c.541C>G	p.Gln181Glu	p.Q181E	ENST00000349721	NM_003070.3	181	Cag/Gag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434666	49434666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	89	514	0	ENST00000301067.7:c.6887C>T	p.Ser2296Phe	p.S2296F	ENST00000301067	NM_003482.3	2296	tCt/tTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845479	72845479	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	69	455	0	ENST00000268489.5:c.3861G>C	p.Met1287Ile	p.M1287I	ENST00000268489	NM_006885.3	1287	atG/atC																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630673	67630673	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	128	370	0	ENST00000272342.5:c.859G>C	p.Asp287His	p.D287H	ENST00000272342	NM_019002.3	287	Gat/Cat																																																																															
CDH1	999	MSKCC	GRCh37	16	68849491	68849491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	158	442	0	ENST00000261769.5:c.1394C>T	p.Ser465Phe	p.S465F	ENST00000261769	NM_004360.3	465	tCt/tTt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059246-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			654	143	591	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0059246-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			305	4676	531	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059246-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			297	297	491	0	ENST00000269305.4:c.380C>A	p.Ser127Tyr	p.S127Y	ENST00000269305	NM_001126112.2	127	tCc/tAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858758	9858760	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs766019656		P-0059246-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			425	117	458	0	ENST00000330684.3:c.2641_2643del	p.Lys881del	p.K881del	ENST00000330684	NM_001134407.1	881	AAG/-																																																																															
TERT	7015	MSKCC	GRCh37	5	1282578	1282578	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059246-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			690	133	533	0	ENST00000310581.5:c.1735A>G	p.Ser579Gly	p.S579G	ENST00000310581	NM_198253.2	579	Agt/Ggt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18524176	18524176	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059246-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			189	45	459	0	ENST00000266497.5:c.1688T>A	p.Phe563Tyr	p.F563Y	ENST00000266497		563	tTt/tAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223655	36223655	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059246-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			739	172	743	0	ENST00000222270.7:c.6205G>C	p.Asp2069His	p.D2069H	ENST00000222270	NM_014727.1	2069	Gac/Cac																																																																															
RB1	5925	MSKCC	GRCh37	13	48955454	48955454	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0059246-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			122	115	404	0	ENST00000267163.4:c.1570A>T	p.Lys524Ter	p.K524*	ENST00000267163	NM_000321.2	524	Aaa/Taa																																																																															
CTR9	9646	MSKCC	GRCh37	11	10800515	10800515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059246-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			490	106	484	0	ENST00000361367.2:c.3385G>A	p.Glu1129Lys	p.E1129K	ENST00000361367	NM_014633.3	1129	Gaa/Aaa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943666	9943667	+	missense_variant	Missense_Mutation	DNP	CA	CA	TG			P-0059246-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			492	102	504	0	ENST00000330684.3:c.1274_1275inv	p.Leu425Pro	p.L425P	ENST00000330684	NM_001134407.1	425	cTG/cCA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0082759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	19	637	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992630	72992630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	26	598	0	ENST00000268489.5:c.1415C>A	p.Ala472Glu	p.A472E	ENST00000268489	NM_006885.3	472	gCg/gAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807902	3807902	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0082759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	11	515	0	ENST00000262367.5:c.3517C>T	p.Arg1173Ter	p.R1173*	ENST00000262367	NM_004380.2	1173	Cga/Tga																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0082998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	113	502	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117878869	117878869	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0082998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	57	397	0	ENST00000297338.2:c.100G>T	p.Glu34Ter	p.E34*	ENST00000297338	NM_006265.2	34	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083099-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			243	55	527	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0083099-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			293	89	373	2	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197717	66197717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083099-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			185	62	381	0	ENST00000273854.3:c.2982G>T	p.Met994Ile	p.M994I	ENST00000273854	NM_004439.5	994	atG/atT																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123247602	123247602	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083099-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			417	59	318	0	ENST00000358487.5:c.1889G>C	p.Arg630Thr	p.R630T	ENST00000358487	NM_000141.4	630	aGa/aCa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252856	36252856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0083099-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			293	60	341	0	ENST00000300305.3:c.506G>C	p.Arg169Thr	p.R169T	ENST00000300305		169	aGa/aCa																																																																															
POLE	5426	MSKCC	GRCh37	12	133263850	133263850	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083099-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			182	40	316	0	ENST00000320574.5:c.52G>C	p.Glu18Gln	p.E18Q	ENST00000320574	NM_006231.2	18	Gag/Cag																																																																															
STK11	6794	MSKCC	GRCh37	19	1207051	1207051	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0083099-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			241	73	514	0	ENST00000326873.7:c.140del	p.Gly47AlafsTer4	p.G47Afs*4	ENST00000326873	NM_000455.4	47	Ggc/gc																																																																															
NF1	4763	MSKCC	GRCh37	17	29665110	29665110	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876658541		P-0083099-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			300	55	338	0	ENST00000358273.4:c.6772C>T	p.Arg2258Ter	p.R2258*	ENST00000358273	NM_001042492.2	2258	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108142077	108142077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083099-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	80	392	0	ENST00000278616.4:c.3021C>A	p.Asp1007Glu	p.D1007E	ENST00000278616	NM_000051.3	1007	gaC/gaA																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589274	67589274	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083099-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			277	82	396	0	ENST00000274335.5:c.1262A>G	p.Asp421Gly	p.D421G	ENST00000274335		421	gAt/gGt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230548	46230548	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0083099-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	76	469	0	ENST00000334344.6:c.797G>A	p.Trp266Ter	p.W266*	ENST00000334344	NM_152641.2	266	tGg/tAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420835	49420835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083099-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	73	562	0	ENST00000301067.7:c.14914G>A	p.Glu4972Lys	p.E4972K	ENST00000301067	NM_003482.3	4972	Gaa/Aaa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609724	81609724	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083099-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			265	68	537	0	ENST00000298171.2:c.1322C>G	p.Thr441Ser	p.T441S	ENST00000298171	NM_000369.2	441	aCc/aGc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252884	36252884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083099-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			300	68	376	0	ENST00000300305.3:c.478G>A	p.Asp160Asn	p.D160N	ENST00000300305		160	Gac/Aac																																																																															
NF1	4763	MSKCC	GRCh37	17	29592301	29592301	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083099-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	88	304	0	ENST00000358273.4:c.4779C>G	p.Phe1593Leu	p.F1593L	ENST00000358273	NM_001042492.2	1593	ttC/ttG																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879856	37879856	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083099-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			301	83	587	0	ENST00000269571.5:c.2151G>T	p.Glu717Asp	p.E717D	ENST00000269571		717	gaG/gaT																																																																															
TRIP13	9319	MSKCC	GRCh37	5	908475	908475	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083099-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			287	49	426	0	ENST00000166345.3:c.765G>C	p.Glu255Asp	p.E255D	ENST00000166345	NM_004237.3	255	gaG/gaC																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508083	106508083	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1339698935		P-0083101-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	85	362	0	ENST00000359195.3:c.77G>A	p.Arg26His	p.R26H	ENST00000359195	NM_002649.2	26	cGc/cAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0083101-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	101	430	0	ENST00000346208.3:c.1275dup	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256993	16256993	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0083101-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	129	458	0	ENST00000375759.3:c.4258G>T	p.Glu1420Ter	p.E1420*	ENST00000375759	NM_015001.2	1420	Gaa/Taa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797302	135797319	+	inframe_deletion	In_Frame_Del	DEL	ATGAAAGAGTGCGTACAC	ATGAAAGAGTGCGTACAC	-			P-0083105-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	21	418	0	ENST00000298552.3:c.550_567del	p.Val184_His189del	p.V184_H189del	ENST00000298552	NM_001162426.1	184	GTGTACGCACTCTTTCAT/-																																																																															
RB1	5925	MSKCC	GRCh37	13	49030390	49030391	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0083105-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	134	344	0	ENST00000267163.4:c.1868dup	p.Asn623LysfsTer30	p.N623Kfs*30	ENST00000267163	NM_000321.2	622	gta/gtAa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	54	374	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111510	8111511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0083106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	19	307	0	ENST00000346208.3:c.998dup	p.Asn333LysfsTer19	p.N333Kfs*19	ENST00000346208		332	-/A																																																																															
AR	367	MSKCC	GRCh37	X	66765446	66765446	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765142941		P-0083106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	19	370	0	ENST00000374690.3:c.458C>T	p.Pro153Leu	p.P153L	ENST00000374690	NM_000044.3	153	cCg/cTg																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800912	120800912	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0083106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	15	329	0	ENST00000257552.2:c.336T>A	p.Phe112Leu	p.F112L	ENST00000257552	NM_002442.3	112	ttT/ttA																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422821	47422821	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	12	345	0	ENST00000404338.3:c.889C>G	p.Arg297Gly	p.R297G	ENST00000404338	NM_004491.4	297	Cga/Gga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0083172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	47	347	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0083172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	66	427	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0083172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	28	314	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SDHA	6389	MSKCC	GRCh37	5	218471	218471	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1061517		P-0083172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	58	337	0	ENST00000264932.6:c.1A>G	p.Met1?	p.M1?	ENST00000264932	NM_004168.2	1	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0083176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	236	569	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0083176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	79	654	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844747	156844747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771342578		P-0083176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			979	180	709	0	ENST00000524377.1:c.1301C>T	p.Thr434Met	p.T434M	ENST00000524377	NM_002529.3	434	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112173968	112173968	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs199740875		P-0083176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	116	606	0	ENST00000257430.4:c.2677G>T	p.Glu893Ter	p.E893*	ENST00000257430	NM_000038.5	893	Gaa/Taa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0083176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	251	656	1	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857968	9857968	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779746293		P-0083176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	270	620	1	ENST00000330684.3:c.3433G>A	p.Val1145Met	p.V1145M	ENST00000330684	NM_001134407.1	1145	Gtg/Atg																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38614513	38614513	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	36	416	0	ENST00000299084.4:c.279G>T	p.Lys93Asn	p.K93N	ENST00000299084	NM_152594.2	93	aaG/aaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0083176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	69	348	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106524711	106524711	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0083176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	92	306	0	ENST00000359195.3:c.2872G>A	p.Gly958Arg	p.G958R	ENST00000359195	NM_002649.2	958	Gga/Aga																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546588	9546588	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	122	588	0	ENST00000353224.5:c.1434G>T	p.Lys478Asn	p.K478N	ENST00000353224	NM_177990.2	478	aaG/aaT																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692881	89692881	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0083176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	41	266	0	ENST00000371953.3:c.365T>G	p.Ile122Ser	p.I122S	ENST00000371953	NM_000314.4	122	aTt/aGt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117639402	117639402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	42	387	0	ENST00000368508.3:c.5954G>C	p.Gly1985Ala	p.G1985A	ENST00000368508	NM_002944.2	1985	gGt/gCt																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2489899	2489899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	79	457	0	ENST00000355716.4:c.296G>A	p.Cys99Tyr	p.C99Y	ENST00000355716	NM_003820.2	99	tGt/tAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	64	417	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	81	500	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	52	344	0	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925621	114925621	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763934346		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	36	376	0	ENST00000543371.1:c.1699G>A	p.Ala567Thr	p.A567T	ENST00000543371	NM_001198531.1	567	Gcc/Acc																																																																															
RET	5979	MSKCC	GRCh37	10	43615077	43615077	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	49	486	0	ENST00000355710.3:c.2491G>T	p.Gly831Cys	p.G831C	ENST00000355710	NM_020975.4	831	Ggc/Tgc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332415	70332415	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1419371452		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	67	365	0	ENST00000373644.4:c.320G>A	p.Arg107Gln	p.R107Q	ENST00000373644	NM_030625.2	107	cGa/cAa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	50	432	1	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625348	69625348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	75	445	0	ENST00000334134.2:c.445G>A	p.Ala149Thr	p.A149T	ENST00000334134	NM_005247.2	149	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	38	293	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444378	49444378	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	87	540	0	ENST00000301067.7:c.2993del	p.Pro998LeufsTer2	p.P998Lfs*2	ENST00000301067	NM_003482.3	998	cCt/ct																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	68	379	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515036	103515036	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775996769		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	83	430	0	ENST00000355739.4:c.1537G>A	p.Ala513Thr	p.A513T	ENST00000355739	NM_000123.3	513	Gca/Aca																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	100	428	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	88	423	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500476	99500476	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	42	493	0	ENST00000268035.6:c.3913del	p.Leu1305TrpfsTer45	p.L1305Wfs*45	ENST00000268035	NM_000875.3	1303	gtC/gt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3651100	3651100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	70	339	0	ENST00000294008.3:c.1043G>A	p.Ser348Asn	p.S348N	ENST00000294008	NM_032444.2	348	aGc/aAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827367	72827367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368568803		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	61	467	0	ENST00000268489.5:c.9214G>A	p.Val3072Ile	p.V3072I	ENST00000268489	NM_006885.3	3072	Gta/Ata																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351703	89351703	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773132293		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	72	443	1	ENST00000301030.4:c.1247C>T	p.Ala416Val	p.A416V	ENST00000301030	NM_001256183.1	416	gCg/gTg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17125885	17125885	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1257705335		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	82	396	0	ENST00000285071.4:c.709G>A	p.Ala237Thr	p.A237T	ENST00000285071	NM_144997.5	237	Gcc/Acc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	96	559	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	116	273	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367969	15367969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759001252		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	68	327	0	ENST00000263377.2:c.1357C>T	p.Arg453Cys	p.R453C	ENST00000263377	NM_058243.2	453	Cgc/Tgc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271764	18271764	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143873873		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	62	405	0	ENST00000222254.8:c.451C>T	p.Pro151Ser	p.P151S	ENST00000222254	NM_005027.3	151	Ccc/Tcc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18280055	18280055	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763521018		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	55	321	0	ENST00000222254.8:c.2138C>T	p.Ala713Val	p.A713V	ENST00000222254	NM_005027.3	713	gCg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214871	36214871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	64	409	6	ENST00000222270.7:c.3302del	p.Pro1101LeufsTer81	p.P1101Lfs*81	ENST00000222270	NM_014727.1	1099	ggC/gg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	82	489	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
CIC	23152	MSKCC	GRCh37	19	42797375	42797376	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	83	463	0	ENST00000575354.2:c.3743dup	p.Leu1249ThrfsTer6	p.L1249Tfs*6	ENST00000575354	NM_015125.3	1246	agc/agCc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422505	47422505	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	92	411	0	ENST00000404338.3:c.578del	p.Lys193SerfsTer3	p.K193Sfs*3	ENST00000404338	NM_004491.4	191	acA/ac																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422638	47422638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	66	410	0	ENST00000404338.3:c.706G>A	p.Val236Met	p.V236M	ENST00000404338	NM_004491.4	236	Gtg/Atg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424020	47424020	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	56	459	0	ENST00000404338.3:c.2092del	p.Thr699HisfsTer2	p.T699Hfs*2	ENST00000404338	NM_004491.4	696	ctC/ct																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902266	50902268	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs766482335		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	59	424	1	ENST00000440232.2:c.169_171del	p.Glu57del	p.E57del	ENST00000440232	NM_002691.3	53	cAGGag/cag																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664819	138664819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	19	259	0	ENST00000330315.3:c.746C>T	p.Ala249Val	p.A249V	ENST00000330315	NM_023067.3	249	gCg/gTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936093	178936093	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913275		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	45	228	0	ENST00000263967.3:c.1635G>C	p.Glu545Asp	p.E545D	ENST00000263967	NM_006218.2	545	gaG/gaC																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165212	47165213	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	43	364	0	ENST00000409792.3:c.913dup	p.Thr305AsnfsTer4	p.T305Nfs*4	ENST00000409792	NM_014159.6	305	aca/aAca																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52595976	52595977	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	53	355	0	ENST00000394830.3:c.3938dup	p.Ser1315ValfsTer26	p.S1315Vfs*26	ENST00000394830	NM_018313.4	1313	cca/ccCa																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	93	456	0	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539266	187539266	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	68	464	0	ENST00000441802.2:c.8474del	p.Gly2825GlufsTer4	p.G2825Efs*4	ENST00000441802	NM_005245.3	2825	gGa/ga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509084	66509085	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	36	302	0	ENST00000273854.3:c.242dup	p.Asn81LysfsTer8	p.N81Kfs*8	ENST00000273854	NM_004439.5	81	aat/aaAt																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	40	321	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174867	112174868	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	80	403	0	ENST00000257430.4:c.3577_3578del	p.Gln1193ValfsTer14	p.Q1193Vfs*14	ENST00000257430	NM_000038.5	1192	aaACag/aaag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066683	94066683	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	46	391	0	ENST00000369303.4:c.1076del	p.Gly359GlufsTer5	p.G359Efs*5	ENST00000369303	NM_004440.3	359	gGa/ga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	51	344	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2983911	2983911	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1237589286		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	68	354	0	ENST00000396946.4:c.619C>T	p.Arg207Cys	p.R207C	ENST00000396946	NM_032415.4	207	Cgc/Tgc																																																																															
NBN	4683	MSKCC	GRCh37	8	90994994	90994994	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs200287925		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	53	315	0	ENST00000265433.3:c.127C>T	p.Arg43Ter	p.R43*	ENST00000265433	NM_002485.4	43	Cga/Tga																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80409422	80409422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	22	181	0	ENST00000286548.4:c.692C>T	p.Ala231Val	p.A231V	ENST00000286548	NM_002072.3	231	gCg/gTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11300387	11300387	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	56	408	0	ENST00000361445.4:c.1759C>T	p.Arg587Ter	p.R587*	ENST00000361445	NM_004958.3	587	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11316236	11316236	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774585197		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	73	384	0	ENST00000361445.4:c.518G>A	p.Arg173His	p.R173H	ENST00000361445	NM_004958.3	173	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106802	27106802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			699	72	498	0	ENST00000324856.7:c.6413C>T	p.Thr2138Ile	p.T2138I	ENST00000324856	NM_006015.4	2138	aCa/aTa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63810736	63810736	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	74	345	0	ENST00000279873.7:c.823T>C	p.Ser275Pro	p.S275P	ENST00000279873	NM_032199.2	275	Tcc/Ccc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106045	8106045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	71	395	0	ENST00000346208.3:c.865C>T	p.Leu289Phe	p.L289F	ENST00000346208		289	Ctc/Ttc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138914	64138915	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775563793		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	27	236	1	ENST00000334205.4:c.2287dup	p.Arg763ProfsTer41	p.R763Pfs*41	ENST00000334205	NM_003942.2	761	gcc/gCcc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572161	64572161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	76	435	0	ENST00000337652.1:c.1493C>A	p.Pro498Gln	p.P498Q	ENST00000337652	NM_130803.2	498	cCg/cAg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121435447	121435447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	107	438	1	ENST00000257555.6:c.1480G>A	p.Ala494Thr	p.A494T	ENST00000257555		494	Gct/Act																																																																															
BLM	641	MSKCC	GRCh37	15	91304228	91304228	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	91	486	0	ENST00000355112.3:c.1625A>G	p.Asp542Gly	p.D542G	ENST00000355112	NM_000057.2	542	gAc/gGc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225567	2225567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	58	483	1	ENST00000326181.6:c.1570C>T	p.Arg524Trp	p.R524W	ENST00000326181	NM_032271.2	524	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219791	36219791	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	71	471	0	ENST00000222270.7:c.4687+1G>A		p.X1563_splice	ENST00000222270	NM_014727.1	1563																																																																																
SOS1	6654	MSKCC	GRCh37	2	39224413	39224413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	60	330	0	ENST00000402219.2:c.2945G>A	p.Arg982Gln	p.R982Q	ENST00000402219	NM_005633.3	982	cGa/cAa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067258	37067258	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	71	350	0	ENST00000231790.2:c.1170del	p.Glu390AspfsTer11	p.E390Dfs*11	ENST00000231790	NM_000249.3	390	gAa/ga																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070422	37070422	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	57	332	0	ENST00000231790.2:c.1558+1del		p.E519fs	ENST00000231790	NM_000249.3	519	gaG/ga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52595843	52595843	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs111345980		P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	98	428	0	ENST00000394830.3:c.4072A>G	p.Ser1358Gly	p.S1358G	ENST00000394830	NM_018313.4	1358	Agc/Ggc																																																																															
MITF	4286	MSKCC	GRCh37	3	70014280	70014280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	75	399	0	ENST00000352241.4:c.1444G>A	p.Asp482Asn	p.D482N	ENST00000352241	NM_198159.2	482	Gac/Aac																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801147	1801147	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	70	400	0	ENST00000260795.2:c.276G>T	p.Gln92His	p.Q92H	ENST00000260795		92	caG/caT																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871288	35871288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	40	346	0	ENST00000303115.3:c.511del	p.Gln171ArgfsTer11	p.Q171Rfs*11	ENST00000303115	NM_002185.3	170	cgC/cg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79952294	79952294	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	71	403	0	ENST00000265081.6:c.302T>C	p.Val101Ala	p.V101A	ENST00000265081	NM_002439.4	101	gTa/gCa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509840	106509840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	78	445	0	ENST00000359195.3:c.1834G>A	p.Ala612Thr	p.A612T	ENST00000359195	NM_002649.2	612	Gcc/Acc																																																																															
SMO	6608	MSKCC	GRCh37	7	128845239	128845239	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	62	404	0	ENST00000249373.3:c.733A>G	p.Thr245Ala	p.T245A	ENST00000249373	NM_005631.4	245	Acg/Gcg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793367	139793367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	60	307	0	ENST00000247668.2:c.175G>A	p.Ala59Thr	p.A59T	ENST00000247668	NM_021138.3	59	Gcc/Acc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98221968	98221968	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	48	416	0	ENST00000331920.6:c.2801A>G	p.Tyr934Cys	p.Y934C	ENST00000331920	NM_000264.3	934	tAt/tGt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123199753	123199753	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	33	245	0	ENST00000218089.9:c.2053T>C	p.Tyr685His	p.Y685H	ENST00000218089	NM_001042749.1	685	Tat/Cat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030533	47030533	+	intron_variant	Intron	SNP	G	G	T			P-0083178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	33	434	0	ENST00000329236.7:c.201+1636G>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0083195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	53	470	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591901	48591901	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	60	509	0	ENST00000342988.3:c.1064A>G	p.Asp355Gly	p.D355G	ENST00000342988	NM_005359.5	355	gAc/gGc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244946	46244946	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	74	702	0	ENST00000334344.6:c.3040C>T	p.Gln1014Ter	p.Q1014*	ENST00000334344	NM_152641.2	1014	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0083195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	59	429	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028767	47028767	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0083195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	61	295	0	ENST00000329236.7:c.71A>T	p.Asp24Val	p.D24V	ENST00000329236	NM_001204466.1	24	gAt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0083200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	148	537	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057229	180057229	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754692331		P-0083200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	77	510	0	ENST00000261937.6:c.509G>A	p.Arg170His	p.R170H	ENST00000261937	NM_182925.4	170	cGc/cAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968233	134968233	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753895808		P-0083200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	84	503	0	ENST00000398015.3:c.2746G>A	p.Val916Met	p.V916M	ENST00000398015	NM_004441.4	916	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112137009	112137009	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	66	341	0	ENST00000257430.4:c.763del	p.His255MetfsTer38	p.H255Mfs*38	ENST00000257430	NM_000038.5	255	Cat/at																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0083201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	19	501	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777838	3777838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863223334		P-0083201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	17	541	0	ENST00000262367.5:c.7210G>A	p.Glu2404Lys	p.E2404K	ENST00000262367	NM_004380.2	2404	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519998		P-0083216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	295	643	0	ENST00000269305.4:c.581T>A	p.Leu194His	p.L194H	ENST00000269305	NM_001126112.2	194	cTt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	113	446	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112170863	112170863	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1114167569		P-0083216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	102	351	0	ENST00000257430.4:c.1958+1G>A		p.X653_splice	ENST00000257430	NM_000038.5	653																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48584782	48584783	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0083216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	71	463	0	ENST00000342988.3:c.862_863dup	p.Gln289PhefsTer48	p.Q289Ffs*48	ENST00000342988	NM_005359.5	287	cat/caTCt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912123	114912128	+	inframe_deletion	In_Frame_Del	DEL	AATACT	AATACT	-			P-0083216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	99	410	0	ENST00000543371.1:c.1194_1199del	p.Lys398_Tyr400delinsAsn	p.K398_Y400delinsN	ENST00000543371	NM_001198531.1	398	aAATACTac/aac																																																																															
ETV1	2115	MSKCC	GRCh37	7	13978868	13978868	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	88	320	0	ENST00000405192.2:c.239C>G	p.Ala80Gly	p.A80G	ENST00000405192	NM_001163147.1	80	gCt/gGt																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182681816	182681816	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	106	338	0	ENST00000292782.4:c.242T>C	p.Ile81Thr	p.I81T	ENST00000292782	NM_020640.2	81	aTt/aCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0083218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	18	409	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0083218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	10	428	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083219-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	244	598	0	ENST00000269305.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000269305	NM_001126112.2	105	Ggc/Tgc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479811	67479811	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060500766		P-0083219-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	299	484	0	ENST00000327367.4:c.1118G>A	p.Arg373His	p.R373H	ENST00000327367	NM_005902.3	373	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0083219-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	195	538	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982096	93982096	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1484017296		P-0083219-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	64	476	2	ENST00000369303.4:c.1369C>T	p.Arg457Trp	p.R457W	ENST00000369303	NM_004440.3	457	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425365	49425365	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0083219-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	128	627	0	ENST00000301067.7:c.13123G>T	p.Gly4375Ter	p.G4375*	ENST00000301067	NM_003482.3	4375	Gga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0083219-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	210	372	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21348913	21348913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083219-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	162	552	0	ENST00000215739.8:c.1682G>A	p.Arg561His	p.R561H	ENST00000215739	NM_006767.3	561	cGc/cAc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368207	45368207	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083219-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	188	446	0	ENST00000262160.6:c.1395C>A	p.Ser465Arg	p.S465R	ENST00000262160	NM_005901.5	465	agC/agA																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38967305	38967305	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083219-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			815	97	443	0	ENST00000357387.3:c.1176G>T	p.Leu392Phe	p.L392F	ENST00000357387	NM_152756.3	392	ttG/ttT																																																																															
TEK	7010	MSKCC	GRCh37	9	27185489	27185489	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083219-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	81	388	0	ENST00000380036.4:c.1189G>C	p.Asp397His	p.D397H	ENST00000380036	NM_000459.3	397	Gac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0083222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	217	336	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	218	472	0	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0083222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			35	17	209	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0083222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	25	311	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821615	72821638	+	inframe_deletion	In_Frame_Del	DEL	GCCACCGCCGCCGCCGCCGCCACT	GCCACCGCCGCCGCCGCCGCCACT	-	rs750348888		P-0083222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	21	259	0	ENST00000268489.5:c.10537_10560del	p.Ser3513_Gly3520del	p.S3513_G3520del	ENST00000268489	NM_006885.3	3513	AGTGGCGGCGGCGGCGGCGGTGGC/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0083222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			47	60	310	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
XIAP	331	MSKCC	GRCh37	X	123020225	123020225	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	51	413	0	ENST00000355640.3:c.713G>C	p.Arg238Pro	p.R238P	ENST00000355640		238	cGa/cCa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87563464	87563464	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0083222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	171	440	0	ENST00000277120.3:c.1852A>T	p.Lys618Ter	p.K618*	ENST00000277120		618	Aag/Tag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176722330	176722330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083228-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	197	564	0	ENST00000439151.2:c.7961G>A	p.Ser2654Asn	p.S2654N	ENST00000439151	NM_022455.4	2654	aGc/aAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398286	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0083232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	8	312	0	ENST00000256078.4:c.33_34delinsCT	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	11	gcTGgt/gcCTgt																																																																															
SMO	6608	MSKCC	GRCh37	7	128851985	128851985	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778688		P-0083240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	163	619	1	ENST00000249373.3:c.2057C>T	p.Ala686Val	p.A686V	ENST00000249373	NM_005631.4	686	gCg/gTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610389	10610389	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0083240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	192	611	0	ENST00000171111.5:c.321del	p.Phe107LeufsTer50	p.F107Lfs*50	ENST00000171111	NM_203500.1	107	ttC/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0083240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	18	354	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0082790-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	284	321	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162743362	162743362	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372362070		P-0082790-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			815	284	325	0	ENST00000367921.3:c.1832G>A	p.Arg611Gln	p.R611Q	ENST00000367921	NM_006182.2	611	cGa/cAa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971032	21971032	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082790-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	290	398	0	ENST00000304494.5:c.326C>A	p.Ala109Asp	p.A109D	ENST00000304494	NM_000077.4	109	gCc/gAc																																																																															
RB1	5925	MSKCC	GRCh37	13	49033944	49033944	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0082790-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	310	245	0	ENST00000267163.4:c.2081T>G	p.Leu694Arg	p.L694R	ENST00000267163	NM_000321.2	694	cTc/cGc																																																																															
USP8	9101	MSKCC	GRCh37	15	50763943	50763943	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0082790-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	59	290	0	ENST00000307179.4:c.800A>T	p.Asp267Val	p.D267V	ENST00000307179		267	gAt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs786203436		P-0082992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	227	424	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913286		P-0082992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	66	168	0	ENST00000263967.3:c.1636C>G	p.Gln546Glu	p.Q546E	ENST00000263967	NM_006218.2	546	Cag/Gag																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40375399	40375399	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0082992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	178	404	0	ENST00000293328.3:c.550+1G>T		p.X184_splice	ENST00000293328	NM_012448.3	184																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27105520	27105520	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	140	318	0	ENST00000324856.7:c.5133del	p.Leu1712CysfsTer2	p.L1712Cfs*2	ENST00000324856	NM_006015.4	1711	Ggg/gg																																																																															
ATRX	546	MSKCC	GRCh37	X	76763955	76763955	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0082992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			790	48	406	0	ENST00000373344.5:c.7353C>G	p.Tyr2451Ter	p.Y2451*	ENST00000373344	NM_000489.3	2451	taC/taG																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53230908	53230925	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ACTGGCGCCCAGCAGGCA	ACTGGCGCCCAGCAGGCA	-			P-0082992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	155	376	0	ENST00000375401.3:c.1868_1885del	p.Leu623_Gln628del	p.L623_Q628del	ENST00000375401	NM_004187.3	623	tTGCCTGCTGGGCGCCAGTgc/tgc																																																																															
MPL	4352	MSKCC	GRCh37	1	43803896	43803896	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0082992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	124	371	0	ENST00000372470.3:c.206A>C	p.Tyr69Ser	p.Y69S	ENST00000372470	NM_005373.2	69	tAc/tCc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53230860	53230860	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0082992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	181	394	0	ENST00000375401.3:c.1933G>T	p.Glu645Ter	p.E645*	ENST00000375401	NM_004187.3	645	Gag/Tag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211280	36211280	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0082992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			804	187	476	0	ENST00000222270.7:c.1031T>G	p.Val344Gly	p.V344G	ENST00000222270	NM_014727.1	344	gTt/gGt																																																																															
STK19	8859	MSKCC	GRCh37	6	31940138	31940138	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			822	190	476	0	ENST00000375331.2:c.280T>C	p.Phe94Leu	p.F94L	ENST00000375331	NM_004197.1	94	Ttc/Ctc																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0082995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			771	144	369	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174384	112174384	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0082995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	169	283	0	ENST00000257430.4:c.3093T>A	p.Tyr1031Ter	p.Y1031*	ENST00000257430	NM_000038.5	1031	taT/taA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0082995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	92	195	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541202	187541202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	131	331	0	ENST00000441802.2:c.6538C>T	p.Pro2180Ser	p.P2180S	ENST00000441802	NM_005245.3	2180	Cct/Tct																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061550	38061550	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0082995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	106	295	0	ENST00000250448.2:c.439A>C	p.Asn147His	p.N147H	ENST00000250448	NM_004496.3	147	Aac/Cac																																																																															
MGA	23269	MSKCC	GRCh37	15	41961346	41961347	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAAT			P-0082995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			768	111	285	0	ENST00000219905.7:c.257_260dup	p.Phe88Ter	p.F88*	ENST00000219905	NM_001164273.1	85	tgg/tgGAATg																																																																															
MGA	23269	MSKCC	GRCh37	15	42002888	42002888	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0082995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	93	211	0	ENST00000219905.7:c.2426-1G>T		p.X809_splice	ENST00000219905	NM_001164273.1	809																																																																																
SOS1	6654	MSKCC	GRCh37	2	39250268	39250268	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264285931		P-0082996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	115	409	0	ENST00000402219.2:c.1301G>A	p.Gly434Glu	p.G434E	ENST00000402219	NM_005633.3	434	gGa/gAa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467466	25467466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			844	58	470	0	ENST00000264709.3:c.1610G>A	p.Cys537Tyr	p.C537Y	ENST00000264709	NM_175629.2	537	tGc/tAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42021428	42021428	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	122	407	0	ENST00000219905.7:c.3724del	p.Arg1242GlufsTer49	p.R1242Efs*49	ENST00000219905	NM_001164273.1	1242	Cga/ga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604701	48604701	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	122	434	0	ENST00000342988.3:c.1523G>C	p.Gly508Ala	p.G508A	ENST00000342988	NM_005359.5	508	gGc/gCc																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31237115	31237115	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0082996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	176	411	0	ENST00000376228.5:c.1096G>A	p.Ala366Thr	p.A366T	ENST00000376228	NM_002117.5	366	Gcc/Acc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165644	118165644	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs538766512		P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	87	518	1	ENST00000369448.3:c.154G>A	p.Val52Ile	p.V52I	ENST00000369448	NM_017709.3	52	Gtc/Atc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	121	607	2	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	96	509	0	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426771	49426772	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs944680171		P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	56	562	0	ENST00000301067.7:c.11714_11716dup	p.Gln3905dup	p.Q3905dup	ENST00000301067	NM_003482.3	3905	ctg/cAGCtg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647028	23647028	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	77	478	0	ENST00000261584.4:c.839del	p.Asn280ThrfsTer8	p.N280Tfs*8	ENST00000261584	NM_024675.3	280	aAc/ac																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	26	577	1	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																															
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	157	522	1	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33446562	33446562	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	43	391	0	ENST00000335858.7:c.71G>T	p.Arg24Met	p.R24M	ENST00000335858	NM_133629.2	24	aGg/aTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	238	615	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217705	7217707	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs757139280		P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	115	480	0	ENST00000380728.2:c.220_222del	p.Glu74del	p.E74del	ENST00000380728		74	GAG/-																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217855	7217858	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	-			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	102	493	0	ENST00000380728.2:c.153_156del	p.Lys53ArgfsTer9	p.K53Rfs*9	ENST00000380728		51	agGAAG/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	136	510	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138729528		P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	139	524	0	ENST00000269305.4:c.523C>T	p.Arg175Cys	p.R175C	ENST00000269305	NM_001126112.2	175	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	114	462	0	ENST00000269305.4:c.406C>G	p.Gln136Glu	p.Q136E	ENST00000269305	NM_001126112.2	136	Caa/Gaa																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7982763	7982763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	78	439	0	ENST00000319144.4:c.1022G>A	p.Cys341Tyr	p.C341Y	ENST00000319144	NM_001139.2	341	tGc/tAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	111	480	0	ENST00000171111.5:c.959G>A	p.Arg320Gln	p.R320Q	ENST00000171111	NM_203500.1	320	cGg/cAg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967091	18967092	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs1384543747		P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	53	354	0	ENST00000262803.5:c.1814_1815del	p.Glu605AlafsTer17	p.E605Afs*17	ENST00000262803	NM_002911.3	602	gcAGag/gcag																																																																															
CIC	23152	MSKCC	GRCh37	19	42793516	42793516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	112	488	0	ENST00000575354.2:c.1318C>T	p.Arg440Cys	p.R440C	ENST00000575354	NM_015125.3	440	Cgc/Tgc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	89	486	4	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5231588	5231588	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772048652		P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	62	270	0	ENST00000357368.4:c.1888G>A	p.Val630Met	p.V630M	ENST00000357368	NM_002850.3	630	Gtg/Atg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661396	227661401	+	inframe_deletion	In_Frame_Del	DEL	TGCTGC	TGCTGC	-	rs770640480		P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	61	567	1	ENST00000305123.5:c.2054_2059del	p.Ser685_Ser686del	p.S685_S686del	ENST00000305123	NM_005544.2	685	aGCAGCAac/aac																																																																															
APC	324	MSKCC	GRCh37	5	112175509	112175509	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	13	494	0	ENST00000257430.4:c.4218G>C	p.Gln1406His	p.Q1406H	ENST00000257430	NM_000038.5	1406	caG/caC																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32184830	32184830	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150609093		P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	101	533	1	ENST00000375023.3:c.1753C>T	p.Arg585Cys	p.R585C	ENST00000375023	NM_004557.3	585	Cgc/Tgc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	48	361	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391832	139391832	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766836819		P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	91	526	0	ENST00000277541.6:c.6359G>A	p.Arg2120His	p.R2120H	ENST00000277541	NM_017617.3	2120	cGc/cAc																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006081	22006081	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202221094		P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	28	449	0	ENST00000276925.6:c.322G>A	p.Val108Met	p.V108M	ENST00000276925	NM_004936.3	108	Gtg/Atg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931787	39931788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	44	451	0	ENST00000378444.4:c.2811dup	p.Thr938HisfsTer8	p.T938Hfs*8	ENST00000378444	NM_001123385.1	937	-/C																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257754	16257755	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	29	538	0	ENST00000375759.3:c.5021_5022del	p.Val1674GlyfsTer14	p.V1674Gfs*14	ENST00000375759	NM_015001.2	1673	acTGtg/actg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609561	81609561	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	123	540	0	ENST00000298171.2:c.1159T>C	p.Tyr387His	p.Y387H	ENST00000298171	NM_000369.2	387	Tac/Cac																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476246	88476246	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	75	320	0	ENST00000360948.2:c.1886T>C	p.Leu629Pro	p.L629P	ENST00000360948	NM_001012338.2	629	cTc/cCc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15938213	15938213	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	29	372	0	ENST00000268712.3:c.7001A>G	p.Lys2334Arg	p.K2334R	ENST00000268712	NM_006311.3	2334	aAa/aGa																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428246	33428246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	24	461	0	ENST00000335858.7:c.541G>A	p.Ala181Thr	p.A181T	ENST00000335858	NM_133629.2	181	Gcg/Acg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59878611	59878612	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	24	403	0	ENST00000259008.2:c.1140+2_1140+3del		p.X380_splice	ENST00000259008	NM_032043.2	380																																																																																
DNMT1	1786	MSKCC	GRCh37	19	10250951	10250951	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	70	426	0	ENST00000340748.4:c.3529T>C	p.Phe1177Leu	p.F1177L	ENST00000340748		1177	Ttc/Ctc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303199	15303200	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	77	496	1	ENST00000263388.2:c.328dup	p.Arg110ProfsTer7	p.R110Pfs*7	ENST00000263388	NM_000435.2	110	cgt/cCgt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311685	15311685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	24	564	0	ENST00000263388.2:c.32G>A	p.Arg11His	p.R11H	ENST00000263388	NM_000435.2	11	cGc/cAc																																																																															
INSR	3643	MSKCC	GRCh37	19	7132196	7132196	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	112	501	0	ENST00000302850.5:c.2815C>A	p.Pro939Thr	p.P939T	ENST00000302850	NM_000208.2	939	Ccc/Acc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326951	62326951	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	98	451	0	ENST00000482936.1:c.3770G>A	p.Cys1257Tyr	p.C1257Y	ENST00000482936		1257	tGc/tAc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29444402	29444402	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	100	437	0	ENST00000544604.2:c.938A>G	p.His313Arg	p.H313R	ENST00000544604	NM_001206998.1	313	cAc/cGc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446378	29446378	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	69	402	1	ENST00000544604.2:c.2212del	p.His738ThrfsTer35	p.H738Tfs*35	ENST00000544604	NM_001206998.1	737	Ccc/cc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715703	30715703	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	119	454	0	ENST00000359013.4:c.1436T>G	p.Leu479Arg	p.L479R	ENST00000359013	NM_001024847.2	479	cTc/cGc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163099	47163099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	12	457	0	ENST00000409792.3:c.3027G>A	p.Met1009Ile	p.M1009I	ENST00000409792	NM_014159.6	1009	atG/atA																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391092	89391092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	88	440	0	ENST00000336596.2:c.1158G>T	p.Gln386His	p.Q386H	ENST00000336596	NM_005233.5	386	caG/caT																																																																															
KDR	3791	MSKCC	GRCh37	4	55972089	55972089	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	94	373	0	ENST00000263923.4:c.1555A>G	p.Ile519Val	p.I519V	ENST00000263923	NM_002253.2	519	Atc/Gtc																																																																															
SDHA	6389	MSKCC	GRCh37	5	228318	228318	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	62	173	0	ENST00000264932.6:c.640A>G	p.Ser214Gly	p.S214G	ENST00000264932	NM_004168.2	214	Agc/Ggc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31472257	31472259	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	132	473	0	ENST00000344624.3:c.2152_2154del	p.Glu718del	p.E718del	ENST00000344624		718	GAG/-																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874591	35874591	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs748801798		P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	54	417	0	ENST00000303115.3:c.752del	p.Phe251SerfsTer44	p.F251Sfs*44	ENST00000303115	NM_002185.3	249	agT/ag																																																																															
PIM1	5292	MSKCC	GRCh37	6	37141760	37141760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	63	464	0	ENST00000373509.5:c.835C>T	p.Pro279Ser	p.P279S	ENST00000373509	NM_002648.3	279	Cca/Tca																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372296	55372297	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	88	560	0	ENST00000297316.4:c.990dup	p.Gly331ArgfsTer34	p.G331Rfs*34	ENST00000297316	NM_022454.3	329	ggc/ggCc																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139563067	139563067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	101	483	0	ENST00000308874.7:c.139C>T	p.Arg47Cys	p.R47C	ENST00000308874		47	Cgt/Tgt																																																																															
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	20	376	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955207	17955207	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	125	375	0	ENST00000458235.1:c.20A>G	p.Glu7Gly	p.E7G	ENST00000458235	NM_000215.3	7	gAg/gGg																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30128028	30128028	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	83	338	0	ENST00000263025.4:c.1101G>C	p.Glu367Asp	p.E367D	ENST00000263025	NM_002746.2	367	gaG/gaC																																																																															
CDK12	51755	MSKCC	GRCh37	17	37667871	37667871	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0083102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	105	322	0	ENST00000447079.4:c.2758del	p.Trp920GlyfsTer26	p.W920Gfs*26	ENST00000447079	NM_015083.1	919	gTt/gt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618689	37618689	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0083102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	182	540	0	ENST00000447079.4:c.365T>A	p.Leu122Ter	p.L122*	ENST00000447079	NM_015083.1	122	tTa/tAa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913381		P-0083163-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	83	461	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578410	7578410	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0083163-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	93	481	0	ENST00000269305.4:c.520A>T	p.Arg174Trp	p.R174W	ENST00000269305	NM_001126112.2	174	Agg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0083163-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	38	285	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047190	180047190	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770500099		P-0083164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	131	474	0	ENST00000261937.6:c.2525G>A	p.Arg842Gln	p.R842Q	ENST00000261937	NM_182925.4	842	cGa/cAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152007146	152007146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	95	387	0	ENST00000262189.6:c.754C>T	p.His252Tyr	p.H252Y	ENST00000262189	NM_170606.2	252	Cat/Tat																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376363	15376398	+	inframe_deletion	In_Frame_Del	DEL	AGGAGGAGGATTCGGCTGAGGGGTCTGGGTCTGCGG	AGGAGGAGGATTCGGCTGAGGGGTCTGGGTCTGCGG	-			P-0083164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	57	481	0	ENST00000263377.2:c.616_651del	p.Pro206_Pro217del	p.P206_P217del	ENST00000263377	NM_058243.2	206	CCGCAGACCCAGACCCCTCAGCCGAATCCTCCTCCT/-																																																																															
TET1	80312	MSKCC	GRCh37	10	70406677	70406677	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0083164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	29	395	0	ENST00000373644.4:c.4191T>A	p.Asp1397Glu	p.D1397E	ENST00000373644	NM_030625.2	1397	gaT/gaA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653802	89653803	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0083164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	131	286	0	ENST00000371953.3:c.100_101del	p.Ala34TyrfsTer9	p.A34Yfs*9	ENST00000371953	NM_000314.4	34	GCt/t																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0078262-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			178	58	471	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112422	115112422	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775182377		P-0078262-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			189	27	626	0	ENST00000257566.3:c.1318G>A	p.Ala440Thr	p.A440T	ENST00000257566	NM_016569.3	440	Gcc/Acc																																																																															
KLF5	688	MSKCC	GRCh37	13	73649905	73649905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078262-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			205	74	475	0	ENST00000377687.4:c.1255G>C	p.Glu419Gln	p.E419Q	ENST00000377687	NM_001730.3	419	Gag/Cag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922321	178922324	+	missense_variant	Missense_Mutation	ONP	GGAG	GGAG	AGAA			P-0078262-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			175	35	255	0	ENST00000263967.3:c.1090_1093delinsAGAA	p.Gly364_Glu365delinsArgLys	p.G364_E365delinsRK	ENST00000263967	NM_006218.2	364	GGAGaa/AGAAaa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98268707	98268707	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078262-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			245	16	466	0	ENST00000331920.6:c.376G>C	p.Glu126Gln	p.E126Q	ENST00000331920	NM_000264.3	126	Gag/Cag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47155412	47155412	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0078262-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			260	65	537	0	ENST00000409792.3:c.4669del	p.Thr1557GlnfsTer8	p.T1557Qfs*8	ENST00000409792	NM_014159.6	1557	Aca/ca																																																																															
SETD2	29072	MSKCC	GRCh37	3	47084124	47084125	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0078262-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			297	81	602	0	ENST00000409792.3:c.7164_7165del	p.Ile2389CysfsTer39	p.I2389Cfs*39	ENST00000409792	NM_014159.6	2388	acCAtt/actt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28609722	28609722	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1192006372		P-0078262-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			226	60	587	0	ENST00000241453.7:c.1507A>G	p.Met503Val	p.M503V	ENST00000241453	NM_004119.2	503	Atg/Gtg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097195	11097195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078262-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			137	53	531	0	ENST00000344626.4:c.686G>T	p.Gly229Val	p.G229V	ENST00000344626	NM_003072.3	229	gGa/gTa																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627703	14627703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078262-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			307	76	723	0	ENST00000254322.2:c.367G>A	p.Glu123Lys	p.E123K	ENST00000254322	NM_006145.1	123	Gaa/Aaa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139895	55139896	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CC	CC	AG			P-0078262-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			157	57	510	0	ENST00000257290.5:c.1556_1557delinsAG	p.Pro519Gln	p.P519Q	ENST00000257290	NM_006206.4	519	cCC/cAG																																																																															
MDM2	4193	MSKCC	GRCh37	12	69230455	69230455	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078262-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	24	423	0	ENST00000462284.1:c.844T>G	p.Tyr282Asp	p.Y282D	ENST00000462284	NM_002392.5	282	Tat/Gat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433619	49433619	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375980443		P-0082423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	10	614	0	ENST00000301067.7:c.7934G>A	p.Arg2645Gln	p.R2645Q	ENST00000301067	NM_003482.3	2645	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0082661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	220	634	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
ERF	2077	MSKCC	GRCh37	19	42754048	42754048	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0082661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	411	504	0	ENST00000222329.4:c.304T>G	p.Phe102Val	p.F102V	ENST00000222329	NM_006494.2	102	Ttc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730882026		P-0082828-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			144	303	401	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0082828-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			163	471	444	0	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883720	37883720	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763276772		P-0082828-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			865	50	604	0	ENST00000269571.5:c.3332G>A	p.Arg1111Gln	p.R1111Q	ENST00000269571		1111	cGg/cAg																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631556	67631556	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082828-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	289	479	1	ENST00000272342.5:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000272342	NM_019002.3	581	aAt/aGt																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38787115	38787127	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGCCTGTGCAA	TCTGCCTGTGCAA	-			P-0082828-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			164	533	401	0	ENST00000348513.6:c.866_878del	p.Ile289ArgfsTer149	p.I289Rfs*149	ENST00000348513	NM_003079.4	289	aTTGCACAGGCAGAg/ag																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971202	13971202	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082828-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			559	244	439	0	ENST00000405192.2:c.727G>C	p.Gly243Arg	p.G243R	ENST00000405192	NM_001163147.1	243	Ggc/Cgc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456338	32456338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082828-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			398	229	517	0	ENST00000332351.3:c.554C>T	p.Pro185Leu	p.P185L	ENST00000332351	NM_024426.4	185	cCc/cTc																																																																															
APLNR	187	MSKCC	GRCh37	11	57004051	57004051	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	A			P-0082828-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			477	294	576	0	ENST00000257254.3:c.428G>T	p.Arg143Leu	p.R143L	ENST00000257254		143	cGg/cTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448366	56448366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082828-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			170	540	534	0	ENST00000407977.2:c.281G>A	p.Ser94Asn	p.S94N	ENST00000407977		94	aGt/aAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393437	139393437	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082828-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			188	487	554	0	ENST00000277541.6:c.6094del	p.Leu2032CysfsTer7	p.L2032Cfs*7	ENST00000277541	NM_017617.3	2032	Ctg/tg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821701	72821705	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCG	GGCCG	-			P-0082828-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			446	360	512	0	ENST00000268489.5:c.10470_10474del	p.Phe3490LeufsTer79	p.F3490Lfs*79	ENST00000268489	NM_006885.3	3490	ttCGGCCag/ttag																																																																															
TET2	54790	MSKCC	GRCh37	4	106180869	106180869	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082828-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			277	261	374	0	ENST00000380013.4:c.3897G>C	p.Lys1299Asn	p.K1299N	ENST00000380013	NM_001127208.2	1299	aaG/aaC																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150923367	150923367	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082828-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			993	57	501	0	ENST00000271640.5:c.2014C>A	p.Pro672Thr	p.P672T	ENST00000271640	NM_001145415.1	672	Ccc/Acc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435566	18435566	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082828-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	171	480	0	ENST00000266497.5:c.551G>T	p.Ser184Ile	p.S184I	ENST00000266497		184	aGt/aTt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52719828	52719828	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0082828-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			559	108	467	0	ENST00000322088.6:c.1040C>G	p.Ser347Ter	p.S347*	ENST00000322088	NM_014225.5	347	tCa/tGa																																																																															
PAX5	5079	MSKCC	GRCh37	9	37006478	37006478	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082828-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			259	164	401	0	ENST00000358127.4:c.467A>G	p.His156Arg	p.H156R	ENST00000358127	NM_001280556.1	156	cAc/cGc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44941830	44941831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0082977-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	31	201	0	ENST00000377967.4:c.3160dup	p.Arg1054LysfsTer5	p.R1054Kfs*5	ENST00000377967	NM_021140.2	1052	gaa/gAaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061217	38061234	+	inframe_deletion	In_Frame_Del	DEL	AGCCGTTCTCGAACATGT	AGCCGTTCTCGAACATGT	-			P-0082977-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	41	493	0	ENST00000250448.2:c.755_772del	p.Asn252_Cys258delinsSer	p.N252_C258delinsS	ENST00000250448	NM_004496.3	252	aACATGTTCGAGAACGGCTgc/agc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061215	38061226	+	inframe_deletion	In_Frame_Del	DEL	GCAGCCGTTCTC	GCAGCCGTTCTC	-			P-0082977-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	20	494	0	ENST00000250448.2:c.763_774del	p.Glu255_Cys258del	p.E255_C258del	ENST00000250448	NM_004496.3	255	GAGAACGGCTGC/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0082994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	219	454	0	ENST00000269305.4:c.376T>C	p.Tyr126His	p.Y126H	ENST00000269305	NM_001126112.2	126	Tac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0082997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	143	317	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0082997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	39	337	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174268	112174268	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0082997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	158	341	0	ENST00000257430.4:c.2977A>T	p.Lys993Ter	p.K993*	ENST00000257430	NM_000038.5	993	Aag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873303	151873303	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0082997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	195	315	0	ENST00000262189.6:c.9235C>T	p.Arg3079Ter	p.R3079*	ENST00000262189	NM_170606.2	3079	Cga/Tga																																																																															
GNA11	2767	MSKCC	GRCh37	19	3115012	3115012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	8	612	1	ENST00000078429.4:c.547C>T	p.Arg183Cys	p.R183C	ENST00000078429	NM_002067.2	183	Cgc/Tgc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913382		P-0073618-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	44	389	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0073618-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			204	89	474	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584514	48584514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073618-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			185	27	379	0	ENST00000342988.3:c.692del	p.Gly231AlafsTer10	p.G231Afs*10	ENST00000342988	NM_005359.5	229	ctG/ct																																																																															
AR	367	MSKCC	GRCh37	X	66942785	66942785	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs886041132		P-0073618-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			115	26	180	0	ENST00000374690.3:c.2566C>T	p.Arg856Cys	p.R856C	ENST00000374690	NM_000044.3	856	Cgc/Tgc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971147	21971148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073618-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			226	53	381	0	ENST00000304494.5:c.210dup	p.Asn71GlnfsTer49	p.N71Qfs*49	ENST00000304494	NM_000077.4	70	-/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0073618-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			155	84	271	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61724084	61724084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073618-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			328	33	349	0	ENST00000401558.2:c.818G>T	p.Gly273Val	p.G273V	ENST00000401558	NM_003400.3	273	gGt/gTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426268	49426269	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073618-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			313	46	474	0	ENST00000301067.7:c.12219dup	p.Gln4074ThrfsTer33	p.Q4074Tfs*33	ENST00000301067	NM_003482.3	4073	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	172	503	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48586237	48586237	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A	rs878854769		P-0081378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	46	301	0	ENST00000342988.3:c.906G>A	p.Trp302Ter	p.W302*	ENST00000342988	NM_005359.5	302	tgG/tgA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101195	27101195	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	96	481	0	ENST00000324856.7:c.4477C>T	p.Gln1493Ter	p.Q1493*	ENST00000324856	NM_006015.4	1493	Cag/Tag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724599	162724599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	123	503	0	ENST00000367921.3:c.371G>A	p.Arg124Gln	p.R124Q	ENST00000367921	NM_006182.2	124	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	163	330	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10273392	10273392	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	76	341	0	ENST00000340748.4:c.911C>G	p.Pro304Arg	p.P304R	ENST00000340748		304	cCt/cGt																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125497716	125497716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	71	382	0	ENST00000428830.2:c.280G>A	p.Asp94Asn	p.D94N	ENST00000428830	NM_001114121.2	94	Gac/Aac																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748960	43748960	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	254	513	0	ENST00000382044.4:c.1846del	p.Val616Ter	p.V616*	ENST00000382044	NM_001141980.1	616	Gta/ta																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78933956	78933956	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771660225		P-0082497-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			617	38	435	0	ENST00000306801.3:c.3556G>A	p.Gly1186Ser	p.G1186S	ENST00000306801	NM_020761.2	1186	Ggt/Agt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0082497-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			611	56	398	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032579	47032580	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0082497-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			563	85	404	0	ENST00000329236.7:c.255dup	p.Arg86AlafsTer17	p.R86Afs*17	ENST00000329236	NM_001204466.1	85	atg/atGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0082767-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	375	241	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0082767-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	155	342	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56477631	56477631	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0082767-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	466	459	0	ENST00000267101.3:c.179T>A	p.Met60Lys	p.M60K	ENST00000267101	NM_001982.3	60	aTg/aAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132714	152132714	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0082767-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	247	103	0	ENST00000262189.6:c.158del	p.Lys53ArgfsTer52	p.K53Rfs*52	ENST00000262189	NM_170606.2	53	aAg/ag																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740665	58740665	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082767-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	361	492	0	ENST00000305921.3:c.1570C>G	p.Gln524Glu	p.Q524E	ENST00000305921	NM_003620.3	524	Caa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0082860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	150	480	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434325	49434325	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0082860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			906	121	696	0	ENST00000301067.7:c.7228C>T	p.Arg2410Ter	p.R2410*	ENST00000301067	NM_003482.3	2410	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0082860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	59	336	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243584	41243584	+	stop_gained	Nonsense_Mutation	SNP	T	T	A	rs80357343		P-0082860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	184	560	0	ENST00000357654.3:c.3964A>T	p.Lys1322Ter	p.K1322*	ENST00000357654	NM_007294.3	1322	Aaa/Taa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0082911-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			813	899	312	1				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0082911-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			260	323	377	0	ENST00000269305.4:c.377A>C	p.Tyr126Ser	p.Y126S	ENST00000269305	NM_001126112.2	126	tAc/tCc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294389	1294389	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082911-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1341	1897	481	0	ENST00000310581.5:c.612C>A	p.Asn204Lys	p.N204K	ENST00000310581	NM_198253.2	204	aaC/aaA																																																																															
TRIP13	9319	MSKCC	GRCh37	5	895007	895007	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082911-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1684	161	305	0	ENST00000166345.3:c.198G>C	p.Leu66Phe	p.L66F	ENST00000166345	NM_004237.3	66	ttG/ttC																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073589	8073589	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0082911-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			608	306	432	0	ENST00000377482.5:c.1070A>C	p.Lys357Thr	p.K357T	ENST00000377482	NM_018948.3	357	aAg/aCg																																																																															
TERT	7015	MSKCC	GRCh37	5	1294472	1294472	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082911-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1339	1871	499	0	ENST00000310581.5:c.529C>G	p.Gln177Glu	p.Q177E	ENST00000310581	NM_198253.2	177	Cag/Gag																																																																															
TRIP13	9319	MSKCC	GRCh37	5	894983	894983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0082911-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1761	165	317	0	ENST00000166345.3:c.174G>A	p.Trp58Ter	p.W58*	ENST00000166345	NM_004237.3	58	tgG/tgA																																																																															
TRIP13	9319	MSKCC	GRCh37	5	895052	895052	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082911-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1528	164	292	0	ENST00000166345.3:c.243G>C	p.Lys81Asn	p.K81N	ENST00000166345	NM_004237.3	81	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587782082		P-0082971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	59	415	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152420001	152420001	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763337967		P-0082971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	29	457	0	ENST00000206249.3:c.1688C>T	p.Thr563Met	p.T563M	ENST00000206249	NM_000125.3	563	aCg/aTg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463308	25463308	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200018028		P-0082971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	51	420	2	ENST00000264709.3:c.2185C>T	p.Arg729Trp	p.R729W	ENST00000264709	NM_175629.2	729	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0082971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	32	240	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0082974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	94	387	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41400185	41400185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	111	384	0	ENST00000373198.4:c.574G>A	p.Ala192Thr	p.A192T	ENST00000373198	NM_133170.3	192	Gca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0082974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	124	390	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
PARP1	142	MSKCC	GRCh37	1	226578325	226578325	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0082974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			832	121	425	0	ENST00000366794.5:c.403G>T	p.Gly135Cys	p.G135C	ENST00000366794	NM_001618.3	135	Ggc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0082981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	179	490	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679814	88679814	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753910026		P-0082981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	29	383	0	ENST00000360948.2:c.649G>A	p.Val217Ile	p.V217I	ENST00000360948	NM_001012338.2	217	Gtc/Atc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421698	49421698	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	26	567	0	ENST00000301067.7:c.14531G>C	p.Gly4844Ala	p.G4844A	ENST00000301067	NM_003482.3	4844	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0082999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	86	535	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0082999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	43	279	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65301800	65301800	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0082999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	16	426	0	ENST00000342505.4:c.3239C>G	p.Ser1080Ter	p.S1080*	ENST00000342505	NM_002227.2	1080	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578213	7578214	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-	rs1131691030		P-0083000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	206	486	0	ENST00000269305.4:c.635_636del	p.Phe212SerfsTer3	p.F212Sfs*3	ENST00000269305	NM_001126112.2	212	tTT/t																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266525	198266526	+	missense_variant	Missense_Mutation	DNP	AC	AC	GG			P-0083000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	168	390	0	ENST00000335508.6:c.2310_2311delinsCC	p.Met770Ile	p.M770I	ENST00000335508	NM_012433.2	770	atGTta/atCCta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0083023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	10	271	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0083023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	123	429	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0083023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	104	339	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112155042	112155042	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0083023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	100	363	0	ENST00000257430.4:c.1312+1G>T		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
FLCN	201163	MSKCC	GRCh37	17	17131368	17131369	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGGCGTGCAA			P-0083023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	117	530	0	ENST00000285071.4:c.83_84insTTGCACGCCCC	p.Leu29CysfsTer30	p.L29Cfs*30	ENST00000285071	NM_144997.5	28	cca/ccTTGCACGCCCCa																																																																															
PPARG	5468	MSKCC	GRCh37	3	12421334	12421334	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1391398513		P-0083023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	124	480	0	ENST00000287820.6:c.214A>G	p.Ser72Gly	p.S72G	ENST00000287820	NM_015869.4	72	Agc/Ggc																																																																															
INHA	3623	MSKCC	GRCh37	2	220440072	220440072	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0083023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	42	569	0	ENST00000243786.2:c.928del	p.Ala310LeufsTer26	p.A310Lfs*26	ENST00000243786	NM_002191.3	309	Ggg/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0083025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			53	347	395	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
RHOA	387	MSKCC	GRCh37	3	49400015	49400015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			75	248	418	0	ENST00000418115.1:c.322C>T	p.Pro108Ser	p.P108S	ENST00000418115	NM_001664.2	108	Ccc/Tcc																																																																															
RB1	5925	MSKCC	GRCh37	13	48881469	48881469	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0083025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			47	152	358	0	ENST00000267163.4:c.191T>G	p.Leu64Ter	p.L64*	ENST00000267163	NM_000321.2	64	tTa/tGa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151871291	151871291	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	182	294	0	ENST00000262189.6:c.9299A>G	p.Lys3100Arg	p.K3100R	ENST00000262189	NM_170606.2	3100	aAa/aGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0083026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	162	467	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0083026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			69	186	359	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992764	68992765	+	stop_gained	Nonsense_Mutation	DNP	CG	CG	TA			P-0083026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	54	438	0	ENST00000288368.4:c.1729_1730delinsTA	p.Arg577Ter	p.R577*	ENST00000288368	NM_024870.2	577	CGa/TAa																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793094	33793095	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0083026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	102	373	0	ENST00000498907.2:c.226_227delinsTT	p.Glu76Leu	p.E76L	ENST00000498907	NM_004364.3	76	GAg/TTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0083040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	75	268	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578402	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	GGGGG	GGGGG	-			P-0083040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	256	584	0	ENST00000269305.4:c.528_532del	p.Cys176Ter	p.C176*	ENST00000269305	NM_001126112.2	176	tgCCCCCac/tgac																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0083085-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	67	370	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563018	21563018	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083085-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	70	497	0	ENST00000382592.4:c.901G>T	p.Gly301Cys	p.G301C	ENST00000382592	NM_014572.2	301	Ggc/Tgc																																																																															
AXL	558	MSKCC	GRCh37	19	41763407	41763407	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1371273703		P-0083085-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	102	476	0	ENST00000301178.4:c.2206G>A	p.Gly736Arg	p.G736R	ENST00000301178	NM_021913.4	736	Ggg/Agg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149514571	149514571	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs540587683		P-0083085-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	59	407	0	ENST00000261799.4:c.373G>A	p.Val125Met	p.V125M	ENST00000261799	NM_002609.3	125	Gtg/Atg																																																																															
ATRX	546	MSKCC	GRCh37	X	76813059	76813059	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0083085-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	34	360	1	ENST00000373344.5:c.6562C>T	p.Arg2188Ter	p.R2188*	ENST00000373344	NM_000489.3	2188	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0083085-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	67	251	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11269370	11269370	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0083085-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	76	352	0	ENST00000361445.4:c.3800del	p.Lys1267ArgfsTer18	p.K1267Rfs*18	ENST00000361445	NM_004958.3	1267	aAg/ag																																																																															
STK11	6794	MSKCC	GRCh37	19	1207183	1207183	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0083085-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	67	430	0	ENST00000326873.7:c.274del	p.Glu92ArgfsTer4	p.E92Rfs*4	ENST00000326873	NM_000455.4	91	Ggg/gg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497272	149497272	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083085-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	92	399	0	ENST00000261799.4:c.3046G>C	p.Glu1016Gln	p.E1016Q	ENST00000261799	NM_002609.3	1016	Gag/Cag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433958	49433958	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083085-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	97	521	0	ENST00000301067.7:c.7595C>G	p.Ser2532Cys	p.S2532C	ENST00000301067	NM_003482.3	2532	tCt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0083087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	50	299	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28893590	28893590	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752645756		P-0083087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	34	380	0	ENST00000282397.4:c.3256G>A	p.Gly1086Arg	p.G1086R	ENST00000282397	NM_002019.4	1086	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660548		P-0083087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	84	602	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523552	106523552	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	40	464	0	ENST00000359195.3:c.2704T>C	p.Phe902Leu	p.F902L	ENST00000359195	NM_002649.2	902	Ttt/Ctt																																																																															
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs137854575		P-0083089-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	133	143	0	ENST00000257430.4:c.2805C>G	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taG																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372550	55372550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759208720		P-0083089-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	69	73	0	ENST00000297316.4:c.1240G>A	p.Val414Met	p.V414M	ENST00000297316	NM_022454.3	414	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579482	7579482	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083089-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	158	143	0	ENST00000269305.4:c.205del	p.Ala69LeufsTer54	p.A69Lfs*54	ENST00000269305	NM_001126112.2	69	Gct/ct																																																																															
APC	324	MSKCC	GRCh37	5	112175631	112175631	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0083089-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	111	141	0	ENST00000257430.4:c.4342del	p.Thr1448ProfsTer25	p.T1448Pfs*25	ENST00000257430	NM_000038.5	1447	cAa/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0083089-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	112	72	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SCG5	6447	MSKCC	GRCh37	15	32988799	32988799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083089-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	43	108	0	ENST00000300175.4:c.628G>A	p.Asp210Asn	p.D210N	ENST00000300175	NM_001144757.1	210	Gat/Aat																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987127	36987127	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0083089-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	38	106	0	ENST00000354822.5:c.562A>C	p.Ser188Arg	p.S188R	ENST00000354822	NM_001079668.2	188	Agc/Cgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0083103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	39	216	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0083103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	346	413	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0083103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	274	428	0	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348116	348116	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762212925		P-0083103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	161	530	0	ENST00000262320.3:c.1390G>A	p.Glu464Lys	p.E464K	ENST00000262320	NM_003502.3	464	Gag/Aag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710666	114710666	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0083103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	136	425	0	ENST00000543371.1:c.151G>T	p.Glu51Ter	p.E51*	ENST00000543371	NM_001198531.1	51	Gaa/Taa																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115263315	115263315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	114	385	0	ENST00000438362.2:c.2035C>T	p.Pro679Ser	p.P679S	ENST00000438362	NM_001242891.1	679	Cca/Tca																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2076269	2076269	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	83	296	0	ENST00000349721.2:c.1976A>G	p.Lys659Arg	p.K659R	ENST00000349721	NM_003070.3	659	aAa/aGa																																																																															
BCL10	8915	MSKCC	GRCh37	1	85741986	85741986	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1169292747		P-0083103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	30	292	0	ENST00000370580.1:c.50A>G	p.Lys17Arg	p.K17R	ENST00000370580	NM_003921.4	17	aAg/aGg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59885825	59885826	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0083103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	114	399	0	ENST00000259008.2:c.918+2dup		p.X306_splice	ENST00000259008	NM_032043.2	306																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72992559	72992560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0083112-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	38	208	0	ENST00000268489.5:c.1485dup	p.Pro496SerfsTer6	p.P496Sfs*6	ENST00000268489	NM_006885.3	495	-/T																																																																															
ROS1	6098	MSKCC	GRCh37	6	117739624	117739624	+	splice_donor_variant	Splice_Site	SNP	C	C	G	rs1450017093		P-0083112-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	39	134	0	ENST00000368508.3:c.168+1G>C		p.X56_splice	ENST00000368508	NM_002944.2	56																																																																																
PIK3C3	5289	MSKCC	GRCh37	18	39550367	39550367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141481378		P-0083113-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	66	204	0	ENST00000262039.4:c.478C>T	p.Pro160Ser	p.P160S	ENST00000262039	NM_002647.2	160	Cct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0083113-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	101	254	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034459	47034459	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083113-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	44	178	0	ENST00000329236.7:c.313C>T	p.Gln105Ter	p.Q105*	ENST00000329236	NM_001204466.1	105	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0083134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			749	88	539	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0083134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	65	442	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0083134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	65	415	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15964793	15964793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	65	422	0	ENST00000268712.3:c.5803G>A	p.Val1935Met	p.V1935M	ENST00000268712	NM_006311.3	1935	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0083134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	37	261	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112177247	112177247	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs745885287		P-0083134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	58	495	0	ENST00000257430.4:c.5956C>A	p.Pro1986Thr	p.P1986T	ENST00000257430	NM_000038.5	1986	Cct/Act																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024029	27024029	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0083187-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	50	279	0	ENST00000324856.7:c.1135C>G	p.Gln379Glu	p.Q379E	ENST00000324856	NM_006015.4	379	Cag/Gag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11106958	11106958	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083187-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	101	550	0	ENST00000344626.4:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000344626	NM_003072.3	555	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600475	10600497	+	frameshift_variant	Frame_Shift_Del	DEL	CCTTCGTGTCAGCATTGGGGCCA	CCTTCGTGTCAGCATTGGGGCCA	-			P-0083187-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	120	499	0	ENST00000171111.5:c.1358_1380del	p.Val453AspfsTer19	p.V453Dfs*19	ENST00000171111	NM_203500.1	453	gTGGCCCCAATGCTGACACGAAGG/g																																																																															
MYC	4609	MSKCC	GRCh37	8	128750513	128750513	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083187-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	74	481	0	ENST00000377970.2:c.50C>G	p.Pro17Arg	p.P17R	ENST00000377970	NM_002467.4	17	cCc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0079195-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			202	138	393	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974715	21974732	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCCCCCGCCTCCA	GCAGCGCCCCCGCCTCCA	-			P-0079195-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			305	146	524	0	ENST00000304494.5:c.95_112del	p.Leu32_Leu37del	p.L32_L37del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCcc/ccc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855787	45855787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079195-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			403	145	520	0	ENST00000391945.4:c.2023G>A	p.Gly675Ser	p.G675S	ENST00000391945	NM_000400.3	675	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0079195-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			200	94	304	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78811766	78811766	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766132128		P-0079195-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			353	45	367	1	ENST00000306801.3:c.1181C>T	p.Pro394Leu	p.P394L	ENST00000306801	NM_020761.2	394	cCg/cTg																																																																															
GNB1	2782	MSKCC	GRCh37	1	1721901	1721901	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079195-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			361	74	450	0	ENST00000378609.4:c.632G>C	p.Trp211Ser	p.W211S	ENST00000378609	NM_002074.3	211	tGg/tCg																																																																															
CALR	811	MSKCC	GRCh37	19	13051097	13051097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079195-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			367	198	512	0	ENST00000316448.5:c.533C>A	p.Pro178Gln	p.P178Q	ENST00000316448	NM_004343.3	178	cCa/cAa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437602	56437603	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0079195-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	145	442	0	ENST00000407977.2:c.859dup	p.Val287GlyfsTer7	p.V287Gfs*7	ENST00000407977		287	gtc/gGtc																																																																															
EED	8726	MSKCC	GRCh37	11	85989562	85989562	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs767548896		P-0082657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			31	10	274	0	ENST00000263360.6:c.1321C>T	p.Arg441Ter	p.R441*	ENST00000263360	NM_003797.3	441	Cga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1219413	1219413	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs730881971		P-0082657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	25	331	0	ENST00000326873.7:c.464+1G>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0082657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			28	5	257	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MED12	9968	MSKCC	GRCh37	X	70361152	70361153	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0082657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	39	608	0	ENST00000374080.3:c.6341dup	p.Gln2115AlafsTer50	p.Q2115Afs*50	ENST00000374080		2114	cag/cAag																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78829300	78829300	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	25	339	0	ENST00000306801.3:c.1351G>T	p.Asp451Tyr	p.D451Y	ENST00000306801	NM_020761.2	451	Gac/Tac																																																																															
NBN	4683	MSKCC	GRCh37	8	90993637	90993637	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			40	12	220	0	ENST00000265433.3:c.286G>T	p.Gly96Cys	p.G96C	ENST00000265433	NM_002485.4	96	Ggt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0082933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	34	444	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912660		P-0082933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	38	493	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0082933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	82	397	0				ENST00000310581	NM_198253.2																																																																																	
JAK2	3717	MSKCC	GRCh37	9	5090838	5090838	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	30	384	0	ENST00000381652.3:c.2986G>T	p.Gly996Trp	p.G996W	ENST00000381652	NM_004972.3	996	Ggg/Tgg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745994	162745994	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	59	428	0	ENST00000367921.3:c.2117T>C	p.Phe706Ser	p.F706S	ENST00000367921	NM_006182.2	706	tTt/tCt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200709	128200709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758912342		P-0082933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	33	433	0	ENST00000341105.2:c.1096G>A	p.Gly366Arg	p.G366R	ENST00000341105	NM_032638.4	366	Ggg/Agg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17122337	17122337	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083046-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	73	492	0	ENST00000285071.4:c.1058G>C	p.Arg353Thr	p.R353T	ENST00000285071	NM_144997.5	353	aGg/aCg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404643	8404643	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083046-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	108	379	0	ENST00000356435.5:c.4104G>T	p.Gln1368His	p.Q1368H	ENST00000356435		1368	caG/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578485	7578485	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1064793929		P-0083047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	314	539	0	ENST00000269305.4:c.445del	p.Ser149ProfsTer21	p.S149Pfs*21	ENST00000269305	NM_001126112.2	149	Tcc/cc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133806	55133806	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77524207		P-0083047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	109	480	0	ENST00000257290.5:c.1019G>A	p.Arg340Gln	p.R340Q	ENST00000257290	NM_006206.4	340	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175349	112175350	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0083047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	247	408	0	ENST00000257430.4:c.4058_4059del	p.Glu1353ValfsTer21	p.E1353Vfs*21	ENST00000257430	NM_000038.5	1353	gAA/g																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856439	111856439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	107	525	0	ENST00000341259.2:c.490G>A	p.Gly164Arg	p.G164R	ENST00000341259	NM_005475.2	164	Ggg/Agg																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137524761	137524761	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1258321707		P-0083047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	31	423	0	ENST00000367739.4:c.608C>T	p.Ala203Val	p.A203V	ENST00000367739	NM_000416.2	203	gCg/gTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410910	63410910	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	43	526	0	ENST00000330258.3:c.2257G>T	p.Asp753Tyr	p.D753Y	ENST00000330258	NM_152424.3	753	Gat/Tat																																																																															
ATRX	546	MSKCC	GRCh37	X	76907632	76907632	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	48	362	0	ENST00000373344.5:c.4529G>C	p.Arg1510Thr	p.R1510T	ENST00000373344	NM_000489.3	1510	aGg/aCg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	109	521	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	25	510	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	126	608	0	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	124	738	2	ENST00000268489.5:c.5677_5678del	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348566	89348568	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-	rs753054998		P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	71	590	1	ENST00000301030.4:c.4382_4384del	p.Lys1461del	p.K1461del	ENST00000301030	NM_001256183.1	1461	aAGAga/aga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101117	27101117	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	106	562	0	ENST00000324856.7:c.4403del	p.Pro1468LeufsTer13	p.P1468Lfs*13	ENST00000324856	NM_006015.4	1467	Ccc/cc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384651	31384651	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	52	555	2	ENST00000328111.2:c.1359del	p.Leu454SerfsTer136	p.L454Sfs*136	ENST00000328111	NM_006892.3	451	gaG/ga																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752411	57752412	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	63	374	0	ENST00000274289.3:c.1161_1162del	p.Arg387SerfsTer3	p.R387Sfs*3	ENST00000274289	NM_006622.3	387	agAGtg/agtg																																																																															
CD79B	974	MSKCC	GRCh37	17	62007249	62007249	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			928	76	571	0	ENST00000392795.3:c.434-1G>T		p.X145_splice	ENST00000392795	NM_001039933.1	145																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27057803	27057804	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	58	619	0	ENST00000324856.7:c.1513_1514del	p.Gln505ValfsTer117	p.Q505Vfs*117	ENST00000324856	NM_006015.4	504	cCA/c																																																																															
TP63	8626	MSKCC	GRCh37	3	189526301	189526301	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	69	595	0	ENST00000264731.3:c.565T>C	p.Ser189Pro	p.S189P	ENST00000264731	NM_003722.4	189	Tcg/Ccg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78704403	78704403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374764141		P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	110	470	0	ENST00000306801.3:c.551C>T	p.Thr184Met	p.T184M	ENST00000306801	NM_020761.2	184	aCg/aTg																																																																															
STK19	8859	MSKCC	GRCh37	6	31947212	31947212	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs775212501		P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	39	521	0	ENST00000375331.2:c.685C>T	p.Arg229Ter	p.R229*	ENST00000375331	NM_004197.1	229	Cga/Tga																																																																															
MSI2	124540	MSKCC	GRCh37	17	55729508	55729508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	106	465	0	ENST00000284073.2:c.776C>T	p.Ala259Val	p.A259V	ENST00000284073	NM_138962.2	259	gCa/gTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434082	49434082	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	65	547	0	ENST00000301067.7:c.7471del	p.Ala2491LeufsTer52	p.A2491Lfs*52	ENST00000301067	NM_003482.3	2491	Gct/ct																																																																															
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	81	502	1	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111886027	111886027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	125	580	0	ENST00000341259.2:c.1649C>T	p.Ala550Val	p.A550V	ENST00000341259	NM_005475.2	550	gCc/gTc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104386997	104386997	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	58	437	0	ENST00000369902.3:c.1362G>T	p.Glu454Asp	p.E454D	ENST00000369902	NM_016169.3	454	gaG/gaT																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332639	153332639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	144	589	0	ENST00000281708.4:c.317G>A	p.Gly106Asp	p.G106D	ENST00000281708	NM_033632.3	106	gGt/gAt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941312	71941312	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs761025371		P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	67	641	0	ENST00000298229.2:c.1087C>A	p.Arg363Ser	p.R363S	ENST00000298229	NM_001567.3	363	Cgc/Agc																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33445580	33445580	+	intron_variant	Intron	SNP	C	C	T			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	45	492	0	ENST00000335858.7:c.144+550G>A		p.*48*	ENST00000335858	NM_133629.2																																																																																	
FANCA	2175	MSKCC	GRCh37	16	89877342	89877342	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	137	498	0	ENST00000389301.3:c.421C>T	p.Gln141Ter	p.Q141*	ENST00000389301	NM_000135.2	141	Cag/Tag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302309	15302309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	48	532	0	ENST00000263388.2:c.962C>T	p.Ala321Val	p.A321V	ENST00000263388	NM_000435.2	321	gCc/gTc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524704	103524704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	64	473	0	ENST00000355739.4:c.2835G>T	p.Lys945Asn	p.K945N	ENST00000355739	NM_000123.3	945	aaG/aaT																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067466	37067467	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	123	511	0	ENST00000231790.2:c.1380_1381del	p.Lys461GlufsTer17	p.K461Efs*17	ENST00000231790	NM_000249.3	459	tcAGag/tcag																																																																															
KIT	3815	MSKCC	GRCh37	4	55565874	55565874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	65	379	0	ENST00000288135.5:c.698G>A	p.Cys233Tyr	p.C233Y	ENST00000288135	NM_000222.2	233	tGc/tAc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46587842	46587842	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	106	486	0	ENST00000263734.3:c.520T>C	p.Cys174Arg	p.C174R	ENST00000263734	NM_001430.4	174	Tgc/Cgc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332532	153332533	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	58	524	0	ENST00000281708.4:c.423_424del	p.Asn141LysfsTer7	p.N141Kfs*7	ENST00000281708	NM_033632.3	141	aaCAgt/aagt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38148103	38148105	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1064	91	436	0	ENST00000317025.8:c.3006_3008del	p.Phe1003del	p.F1003del	ENST00000317025	NM_023034.1	1002	ttCTTt/ttt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032543	12032543	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	59	344	0	ENST00000353533.5:c.979C>T	p.Gln327Ter	p.Q327*	ENST00000353533	NM_003010.3	327	Cag/Tag																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182565	99182565	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	37	526	0	ENST00000074304.5:c.2368A>G	p.Met790Val	p.M790V	ENST00000074304	NM_001134224.1	790	Atg/Gtg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89811433	89811435	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	53	480	0	ENST00000389301.3:c.3558_3560del	p.Arg1187del	p.R1187del	ENST00000389301	NM_000135.2	1186	agGAGa/aga																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748462	43748462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	66	600	0	ENST00000382044.4:c.2344G>A	p.Gly782Arg	p.G782R	ENST00000382044	NM_001141980.1	782	Gga/Aga																																																																															
NF1	4763	MSKCC	GRCh37	17	29657488	29657489	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	43	385	0	ENST00000358273.4:c.5786_5787del	p.Glu1929ValfsTer6	p.E1929Vfs*6	ENST00000358273	NM_001042492.2	1928	gaAGag/gaag																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200369	138200369	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	152	645	0	ENST00000237289.4:c.1787G>T	p.Arg596Leu	p.R596L	ENST00000237289	NM_001270507.1	596	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0083049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	179	498	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0083049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	227	447	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0083049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	131	417	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45422959	45422959	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0083049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	75	417	0	ENST00000262160.6:c.169C>T	p.Arg57Ter	p.R57*	ENST00000262160	NM_005901.5	57	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730876	40730876	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372862828		P-0083049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			767	243	491	0	ENST00000373198.4:c.3659G>A	p.Arg1220Gln	p.R1220Q	ENST00000373198	NM_133170.3	1220	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0083049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	58	287	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411940	63411940	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0083049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	267	632	0	ENST00000330258.3:c.1227del	p.Trp410GlyfsTer12	p.W410Gfs*12	ENST00000330258	NM_152424.3	409	ctG/ct																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0083056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	45	539	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs863224499		P-0083056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	50	616	0	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
BCL2L11	10018	MSKCC	GRCh37	2	111907683	111907683	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146318804		P-0083063-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	76	214	1	ENST00000393256.3:c.457C>T	p.Arg153Trp	p.R153W	ENST00000393256	NM_006538.4	153	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577536	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0083063-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			107	148	188	0	ENST00000269305.4:c.745_747del	p.Arg249del	p.R249del	ENST00000269305	NM_001126112.2	249	AGG/-																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933428	39933428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083063-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	66	277	0	ENST00000378444.4:c.1171G>A	p.Gly391Ser	p.G391S	ENST00000378444	NM_001123385.1	391	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0083067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	43	326	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0083067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	21	160	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056490	26056490	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs138831824		P-0083067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	34	244	0	ENST00000343677.2:c.167G>C	p.Gly56Ala	p.G56A	ENST00000343677	NM_005319.3	56	gGa/gCa																																																																															
EP300	2033	MSKCC	GRCh37	22	41573800	41573800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	42	322	0	ENST00000263253.7:c.6085C>T	p.Pro2029Ser	p.P2029S	ENST00000263253	NM_001429.3	2029	Cca/Tca																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591895	48591900	+	inframe_deletion	In_Frame_Del	DEL	ACGTGG	ACGTGG	-			P-0083067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	14	473	0	ENST00000342988.3:c.1060_1065del	p.Val354_Asp355del	p.V354_D355del	ENST00000342988	NM_005359.5	353	tACGTGGac/tac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929275	32929275	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0083067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	27	249	0	ENST00000380152.3:c.7285G>T	p.Glu2429Ter	p.E2429*	ENST00000380152		2429	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	74	170	0	ENST00000269305.4:c.772G>C	p.Glu258Gln	p.E258Q	ENST00000269305	NM_001126112.2	258	Gaa/Caa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024759	31024759	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143328954		P-0083069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	122	246	1	ENST00000375687.4:c.4244G>A	p.Arg1415Gln	p.R1415Q	ENST00000375687	NM_015338.5	1415	cGa/cAa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231776	36231776	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	74	328	0	ENST00000300305.3:c.608C>A	p.Pro203His	p.P203H	ENST00000300305		203	cCt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781845		P-0083069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	89	330	0	ENST00000269305.4:c.511G>A	p.Glu171Lys	p.E171K	ENST00000269305	NM_001126112.2	171	Gag/Aag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41818361	41818361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	58	255	0	ENST00000373198.4:c.13G>A	p.Ala5Thr	p.A5T	ENST00000373198	NM_133170.3	5	Gcc/Acc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244208	41244208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	179	289	0	ENST00000357654.3:c.3340G>A	p.Glu1114Lys	p.E1114K	ENST00000357654	NM_007294.3	1114	Gaa/Aaa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828081	243828081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	204	129	0	ENST00000263826.5:c.277G>A	p.Glu93Lys	p.E93K	ENST00000263826	NM_005465.4	93	Gag/Aag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922063	39922063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	78	138	0	ENST00000378444.4:c.4109C>T	p.Pro1370Leu	p.P1370L	ENST00000378444	NM_001123385.1	1370	cCt/cTt																																																																															
EP300	2033	MSKCC	GRCh37	22	41489079	41489079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0083069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	56	148	0	ENST00000263253.7:c.71C>A	p.Ser24Ter	p.S24*	ENST00000263253	NM_001429.3	24	tCg/tAg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41219643	41219643	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	52	199	0	ENST00000357654.3:c.5056C>G	p.His1686Asp	p.H1686D	ENST00000357654	NM_007294.3	1686	Cat/Gat																																																																															
MET	4233	MSKCC	GRCh37	7	116411884	116411895	+	splice_region_variant,intron_variant	Splice_Region	DEL	TCTTTCTCTCTG	TCTTTCTCTCTG	-			P-0083069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	809	320	0	ENST00000397752.3:c.2888-18_2888-7del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
TBX3	6926	MSKCC	GRCh37	12	115117734	115117734	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0083069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	64	198	0	ENST00000257566.3:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000257566	NM_016569.3	234	tAt/tGt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337668	73337668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	74	205	0	ENST00000377767.4:c.2048C>T	p.Ser683Phe	p.S683F	ENST00000377767	NM_014953.3	683	tCt/tTt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680903	30680904	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0083069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	178	283	0	ENST00000376406.3:c.815_816del	p.Thr272LysfsTer28	p.T272Kfs*28	ENST00000376406	NM_014641.2	272	aCA/a																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637489	47637489	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	74	222	0	ENST00000233146.2:c.623G>C	p.Gly208Ala	p.G208A	ENST00000233146	NM_000251.2	208	gGa/gCa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243908	41243908	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0083069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	196	254	0	ENST00000357654.3:c.3640G>C	p.Glu1214Gln	p.E1214Q	ENST00000357654	NM_007294.3	1214	Gag/Cag																																																																															
SESN1	27244	MSKCC	GRCh37	6	109415108	109415108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	120	275	0	ENST00000436639.2:c.169G>A	p.Glu57Lys	p.E57K	ENST00000436639	NM_014454.2	57	Gag/Aag																																																																															
MSH6	2956	MSKCC	GRCh37	2	48023133	48023133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	133	238	0	ENST00000234420.5:c.558C>A	p.Asp186Glu	p.D186E	ENST00000234420	NM_000179.2	186	gaC/gaA																																																																															
FLT1	2321	MSKCC	GRCh37	13	28891687	28891687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0083070-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	64	175	0	ENST00000282397.4:c.3334C>T	p.Arg1112Cys	p.R1112C	ENST00000282397	NM_002019.4	1112	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112170646	112170646	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs587783035		P-0083070-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	82	150	0	ENST00000257430.4:c.1744-2A>G		p.X582_splice	ENST00000257430	NM_000038.5	582																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0083070-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	46	147	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578414	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0083070-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	83	242	0	ENST00000269305.4:c.516dup	p.Val173CysfsTer8	p.V173Cfs*8	ENST00000269305	NM_001126112.2	172	-/T																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911561	114911561	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0083070-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	52	212	0	ENST00000543371.1:c.1079A>G	p.Tyr360Cys	p.Y360C	ENST00000543371	NM_001198531.1	360	tAt/tGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0082917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	124	254	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926897	112926897	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	55	257	0	ENST00000351677.2:c.1517A>G	p.Gln506Arg	p.Q506R	ENST00000351677	NM_002834.3	506	cAg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0082922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	121	570	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0082922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	88	423	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0082922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	33	488	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
ATM	472	MSKCC	GRCh37	11	108199881	108199881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730881315		P-0082922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	59	326	0	ENST00000278616.4:c.7223C>T	p.Ser2408Leu	p.S2408L	ENST00000278616	NM_000051.3	2408	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112174131	112174131	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	61	454	0	ENST00000257430.4:c.2840del	p.Cys947PhefsTer8	p.C947Ffs*8	ENST00000257430	NM_000038.5	947	tGt/tt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593387	48593387	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0082924-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	274	356	0	ENST00000342988.3:c.1140-2A>G		p.X380_splice	ENST00000342988	NM_005359.5	380																																																																																
MEN1	4221	MSKCC	GRCh37	11	64577560	64577561	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0082924-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			74	177	338	0	ENST00000337652.1:c.21_22del	p.Lys8AspfsTer108	p.K8Dfs*108	ENST00000337652	NM_130803.2	7	caGAag/caag																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288894	33288894	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0082924-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	264	450	0	ENST00000374542.5:c.658T>G	p.Ser220Ala	p.S220A	ENST00000374542	NM_001141970.1	220	Tcc/Gcc																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	182	474	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	142	442	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	189	544	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15308383	15308383	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	40	512	0	ENST00000263388.2:c.125del	p.Pro42LeufsTer194	p.P42Lfs*194	ENST00000263388	NM_000435.2	42	cCt/ct																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	128	504	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	183	467	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968322	2968323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762770988		P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	111	397	2	ENST00000396946.4:c.1663dup	p.Arg555ProfsTer38	p.R555Pfs*38	ENST00000396946	NM_032415.4	555	cgg/cCgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249360	153249361	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	259	416	0	ENST00000281708.4:c.1417dup	p.Arg473LysfsTer4	p.R473Kfs*4	ENST00000281708	NM_033632.3	473	aga/aAga																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs758630849		P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	44	443	0	ENST00000305921.3:c.1349del	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	250	473	3	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	139	387	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
B2M	567	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	191	414	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
RPTOR	57521	MSKCC	GRCh37	17	78681725	78681725	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	44	433	0	ENST00000306801.3:c.433C>T	p.Arg145Ter	p.R145*	ENST00000306801	NM_020761.2	145	Cga/Tga																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806180	1806181	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775260779		P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	162	541	3	ENST00000260795.2:c.1206dup	p.Lys403GlnfsTer93	p.K403Qfs*93	ENST00000260795		400	agc/agCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057520008		P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	55	525	0	ENST00000269305.4:c.613T>C	p.Tyr205His	p.Y205H	ENST00000269305	NM_001126112.2	205	Tat/Cat																																																																															
AKT1	207	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	167	508	0	ENST00000349310.3:c.155T>G	p.Leu52Arg	p.L52R	ENST00000349310	NM_001014432.1	52	cTc/cGc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200073	128200073	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374457534		P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	189	567	0	ENST00000341105.2:c.1232C>T	p.Ala411Val	p.A411V	ENST00000341105	NM_032638.4	411	gCg/gTg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	145	350	4	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37665993	37665993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	42	342	0	ENST00000447079.4:c.2645G>A	p.Arg882Gln	p.R882Q	ENST00000447079	NM_015083.1	882	cGg/cAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539257	187539257	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	61	528	0	ENST00000441802.2:c.8483T>C	p.Val2828Ala	p.V2828A	ENST00000441802	NM_005245.3	2828	gTa/gCa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046343	180046343	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1489676984		P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	73	387	1	ENST00000261937.6:c.2671C>T	p.Arg891Cys	p.R891C	ENST00000261937	NM_182925.4	891	Cgc/Tgc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780039	9780039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	167	536	0	ENST00000377346.4:c.1303G>A	p.Gly435Arg	p.G435R	ENST00000377346	NM_005026.3	435	Ggg/Agg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412721	139412721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	182	498	0	ENST00000277541.6:c.1123G>A	p.Ala375Thr	p.A375T	ENST00000277541	NM_017617.3	375	Gca/Aca																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098956	47098957	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	33	422	0	ENST00000409792.3:c.6317dup	p.Lys2107GlufsTer5	p.K2107Efs*5	ENST00000409792	NM_014159.6	2106	aag/aaAg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78858928	78858928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	141	429	0	ENST00000306801.3:c.1963G>A	p.Gly655Arg	p.G655R	ENST00000306801	NM_020761.2	655	Ggg/Agg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	109	294	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40353863	40353863	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs760069627		P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	40	429	0	ENST00000293328.3:c.2257A>G	p.Thr753Ala	p.T753A	ENST00000293328	NM_012448.3	753	Acc/Gcc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6038757	6038758	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	152	391	0	ENST00000265849.7:c.686_687del	p.Ser229CysfsTer19	p.S229Cfs*19	ENST00000265849	NM_000535.5	229	tCT/t																																																																															
TERT	7015	MSKCC	GRCh37	5	1296332	1296333	+	upstream_gene_variant	5'Flank	INS	-	-	A			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	62	449	0				ENST00000310581	NM_198253.2																																																																																	
SMARCA4	6597	MSKCC	GRCh37	19	11169486	11169486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	166	414	0	ENST00000344626.4:c.4556A>G	p.Tyr1519Cys	p.Y1519C	ENST00000344626	NM_003072.3	1519	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112175759	112175760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	161	485	0	ENST00000257430.4:c.4469dup	p.His1490GlnfsTer24	p.H1490Qfs*24	ENST00000257430	NM_000038.5	1490	cat/cAat																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900220	101900220	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	46	429	0	ENST00000374994.4:c.654A>C	p.Glu218Asp	p.E218D	ENST00000374994	NM_004612.2	218	gaA/gaC																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2039735	2039735	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	103	559	0	ENST00000349721.2:c.625A>G	p.Lys209Glu	p.K209E	ENST00000349721	NM_003070.3	209	Aaa/Gaa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264305	46264305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	164	476	0	ENST00000371998.3:c.1352C>T	p.Pro451Leu	p.P451L	ENST00000371998		451	cCa/cTa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713673	30713673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	206	575	0	ENST00000359013.4:c.1073T>C	p.Leu358Pro	p.L358P	ENST00000359013	NM_001024847.2	358	cTa/cCa																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186507017	186507017	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	44	391	0	ENST00000323963.5:c.1183A>G	p.Thr395Ala	p.T395A	ENST00000323963		395	Aca/Gca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912336	32912336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	45	401	0	ENST00000380152.3:c.3844A>G	p.Thr1282Ala	p.T1282A	ENST00000380152		1282	Act/Gct																																																																															
AR	367	MSKCC	GRCh37	X	66765326	66765326	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	150	550	0	ENST00000374690.3:c.338A>G	p.Glu113Gly	p.E113G	ENST00000374690	NM_000044.3	113	gAa/gGa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123171410	123171410	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	123	348	0	ENST00000218089.9:c.322C>G	p.His108Asp	p.H108D	ENST00000218089	NM_001042749.1	108	Cat/Gat																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304140	+	missense_variant	Missense_Mutation	DNP	AA	AA	GG			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	62	505	0	ENST00000355112.3:c.1536_1537delinsGG	p.Lys513Glu	p.K513E	ENST00000355112	NM_000057.2	512	ggAAaa/ggGGaa																																																																															
MSH3	4437	MSKCC	GRCh37	5	80024742	80024742	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	146	295	0	ENST00000265081.6:c.1526A>G	p.Tyr509Cys	p.Y509C	ENST00000265081	NM_002439.4	509	tAc/tGc																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27840075	27840075	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	196	603	2	ENST00000328488.2:c.19A>G	p.Thr7Ala	p.T7A	ENST00000328488	NM_003533.2	7	Aca/Gca																																																																															
JAK1	3716	MSKCC	GRCh37	1	65303753	65303753	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	53	405	0	ENST00000342505.4:c.3002A>G	p.His1001Arg	p.H1001R	ENST00000342505	NM_002227.2	1001	cAc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131691026		P-0082962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	95	595	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141012	55141012	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501502		P-0082962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	62	377	0	ENST00000257290.5:c.1658C>T	p.Pro553Leu	p.P553L	ENST00000257290	NM_006206.4	553	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112174117	112174117	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0082962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	60	528	0	ENST00000257430.4:c.2827del	p.Ser943GlnfsTer12	p.S943Qfs*12	ENST00000257430	NM_000038.5	942	aaT/aa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239945	98239945	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0082962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	67	418	0	ENST00000331920.6:c.1387T>A	p.Ser463Thr	p.S463T	ENST00000331920	NM_000264.3	463	Tcc/Acc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858477	9858477	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	56	565	0	ENST00000330684.3:c.2924T>C	p.Leu975Pro	p.L975P	ENST00000330684	NM_001134407.1	975	cTc/cCc																																																																															
APC	324	MSKCC	GRCh37	5	112175778	112175780	+	frameshift_variant	Frame_Shift_Del	DEL	CTC	CTC	T			P-0082962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	44	575	0	ENST00000257430.4:c.4487_4489delinsT	p.Thr1496IlefsTer17	p.T1496Ifs*17	ENST00000257430	NM_000038.5	1496	aCTCca/aTca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0082966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	12	236	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0082966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			849	42	473	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0082966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	243	560	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0082966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	12	363	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0082966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	73	558	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11169377	11169377	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519916		P-0082966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	119	369	0	ENST00000361445.4:c.7498A>T	p.Ile2500Phe	p.I2500F	ENST00000361445	NM_004958.3	2500	Att/Ttt																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2636803	2636803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			835	63	496	0	ENST00000342085.4:c.1252G>A	p.Asp418Asn	p.D418N	ENST00000342085	NM_002613.4	418	Gat/Aat																																																																															
PARP1	142	MSKCC	GRCh37	1	226578316	226578316	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs193238922		P-0082966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	115	387	0	ENST00000366794.5:c.412C>T	p.Arg138Cys	p.R138C	ENST00000366794	NM_001618.3	138	Cgc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302992	15302992	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755685473		P-0082966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	139	584	0	ENST00000263388.2:c.458G>A	p.Arg153His	p.R153H	ENST00000263388	NM_000435.2	153	cGc/cAc																																																																															
HGF	3082	MSKCC	GRCh37	7	81388044	81388044	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0082966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	17	287	0	ENST00000222390.5:c.331G>T	p.Glu111Ter	p.E111*	ENST00000222390	NM_000601.4	111	Gaa/Taa																																																																															
SESN1	27244	MSKCC	GRCh37	6	109315685	109315688	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-	rs751167597		P-0082966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	41	342	0	ENST00000436639.2:c.1097_1100del	p.Glu366ValfsTer57	p.E366Vfs*57	ENST00000436639	NM_014454.2	366	gAGAGt/gt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0082966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	208	276	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127933419	127933419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	35	368	0	ENST00000373547.4:c.116C>T	p.Ser39Leu	p.S39L	ENST00000373547	NM_002721.4	39	tCa/tTa																																																																															
APC	324	MSKCC	GRCh37	5	112174973	112174974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0082966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	190	432	0	ENST00000257430.4:c.3683dup	p.Asn1229GlufsTer11	p.N1229Efs*11	ENST00000257430	NM_000038.5	1228	cag/cAag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603012	48603012	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	23	330	0	ENST00000342988.3:c.1313T>C	p.Phe438Ser	p.F438S	ENST00000342988	NM_005359.5	438	tTt/tCt																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2191388	2191388	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61736899		P-0082966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	59	459	0	ENST00000349721.2:c.4717G>A	p.Asp1573Asn	p.D1573N	ENST00000349721	NM_003070.3	1573	Gat/Aat																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411135	63411135	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	217	283	0	ENST00000330258.3:c.2032del	p.His678ThrfsTer41	p.H678Tfs*41	ENST00000330258	NM_152424.3	678	Cac/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0082967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	177	424	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0082967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	76	611	2	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423601	88423601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	61	485	0	ENST00000360948.2:c.2234G>A	p.Arg745Gln	p.R745Q	ENST00000360948	NM_001012338.2	745	cGg/cAg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0082967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	194	371	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	141	552	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251595	212251595	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1044752647		P-0082967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	160	555	0	ENST00000342788.4:c.3464G>A	p.Arg1155Gln	p.R1155Q	ENST00000342788	NM_005235.2	1155	cGa/cAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101681	27101681	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0082967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	252	593	0	ENST00000324856.7:c.4963C>T	p.Gln1655Ter	p.Q1655*	ENST00000324856	NM_006015.4	1655	Cag/Tag																																																																															
SESN3	143686	MSKCC	GRCh37	11	94918482	94918482	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368962287		P-0082967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	87	451	0	ENST00000536441.1:c.700G>A	p.Val234Ile	p.V234I	ENST00000536441	NM_144665.3	234	Gtt/Att																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711240	114711240	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0082967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	59	304	0	ENST00000543371.1:c.257-2A>G		p.X86_splice	ENST00000543371	NM_001198531.1	86																																																																																
NTRK1	4914	MSKCC	GRCh37	1	156845423	156845424	+	missense_variant	Missense_Mutation	DNP	AC	AC	CA			P-0082967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	52	767	1	ENST00000524377.1:c.1466_1467delinsCA	p.His489Pro	p.H489P	ENST00000524377	NM_002529.3	489	cAC/cCA																																																																															
USP8	9101	MSKCC	GRCh37	15	50784972	50784972	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	50	413	0	ENST00000307179.4:c.2309G>C	p.Gly770Ala	p.G770A	ENST00000307179		770	gGa/gCa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257968	16257968	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	83	571	0	ENST00000375759.3:c.5233G>C	p.Ala1745Pro	p.A1745P	ENST00000375759	NM_015001.2	1745	Gca/Cca																																																																															
APC	324	MSKCC	GRCh37	5	112170701	112170701	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0082967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	149	453	2	ENST00000257430.4:c.1797C>A	p.Cys599Ter	p.C599*	ENST00000257430	NM_000038.5	599	tgC/tgA																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0082968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	36	311	0	ENST00000397752.3:c.3028G>T	p.Asp1010Tyr	p.D1010Y	ENST00000397752	NM_000245.2	1010	Gat/Tat																																																																															
FLT3	2322	MSKCC	GRCh37	13	28599073	28599073	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	22	203	0	ENST00000241453.7:c.2215G>T	p.Gly739Cys	p.G739C	ENST00000241453	NM_004119.2	739	Ggt/Tgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045134	47045134	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	37	310	0	ENST00000329236.7:c.2141G>T	p.Arg714Leu	p.R714L	ENST00000329236	NM_001204466.1	714	cGg/cTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133235911	133235911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	33	316	0	ENST00000320574.5:c.3245G>T	p.Arg1082Leu	p.R1082L	ENST00000320574	NM_006231.2	1082	cGc/cTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0083072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	5081	213	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0083072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	351	245	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42796547	42796547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0083072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	70	255	1	ENST00000575354.2:c.3104C>T	p.Thr1035Met	p.T1035M	ENST00000575354	NM_015125.3	1035	aCg/aTg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44945218	44945218	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	63	166	0	ENST00000377967.4:c.3542G>T	p.Cys1181Phe	p.C1181F	ENST00000377967	NM_021140.2	1181	tGt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577088	7577088	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1204379654		P-0083073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	113	240	0	ENST00000269305.4:c.850A>C	p.Thr284Pro	p.T284P	ENST00000269305	NM_001126112.2	284	Aca/Cca																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805653	32805653	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0083073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	63	225	0	ENST00000374899.4:c.358A>T	p.Ser120Cys	p.S120C	ENST00000374899	NM_018833.2	120	Agc/Tgc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56401602	56401603	+	stop_gained	Nonsense_Mutation	DNP	TG	TG	GT			P-0083073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	40	233	0	ENST00000348428.3:c.1464_1465delinsGT	p.Phe488_Gly489delinsLeuTer	p.F488_G489delinsL*	ENST00000348428	NM_006785.3	488	ttTGga/ttGTga																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891182	101891182	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0083073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	93	211	0	ENST00000374994.4:c.143G>T	p.Cys48Phe	p.C48F	ENST00000374994	NM_004612.2	48	tGt/tTt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149439266	149439266	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201569135		P-0083073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	42	177	0	ENST00000286301.3:c.2129G>A	p.Arg710His	p.R710H	ENST00000286301	NM_005211.3	710	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222909	36222918	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAGATTCA	GCCAGATTCA	-			P-0083073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	93	264	0	ENST00000222270.7:c.5539_5548del	p.Pro1847AlafsTer45	p.P1847Afs*45	ENST00000222270	NM_014727.1	1846	cgGCCAGATTCA/cg																																																																															
MGA	23269	MSKCC	GRCh37	15	42028837	42028837	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0083073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	38	252	0	ENST00000219905.7:c.4375G>C	p.Ala1459Pro	p.A1459P	ENST00000219905	NM_001164273.1	1459	Gca/Cca																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900316	3900316	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0083073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	79	212	0	ENST00000262367.5:c.780G>T	p.Gln260His	p.Q260H	ENST00000262367	NM_004380.2	260	caG/caT																																																																															
MPL	4352	MSKCC	GRCh37	1	43803817	43803817	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs148434485		P-0051617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			26	19	652	0	ENST00000372470.3:c.127C>T	p.Arg43Ter	p.R43*	ENST00000372470	NM_005373.2	43	Cga/Tga																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396585	30396585	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1339474902		P-0051617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			50	16	428	0	ENST00000331968.5:c.134C>T	p.Pro45Leu	p.P45L	ENST00000331968	NM_002742.2	45	cCg/cTg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217705	7217707	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs757139280		P-0051617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			32	22	694	0	ENST00000380728.2:c.220_222del	p.Glu74del	p.E74del	ENST00000380728		74	GAG/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0051617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			11	34	659	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180055948	180055948	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1309857166		P-0051617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			56	25	642	0	ENST00000261937.6:c.1037C>T	p.Thr346Met	p.T346M	ENST00000261937	NM_182925.4	346	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242487	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATCTC	AATTAAGAGAAGCAACATCTC	TCT	rs727504282		P-0051617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			60	274	388	0	ENST00000275493.2:c.2237_2257delinsTCT	p.Glu746_Pro753delinsValSer	p.E746_P753delinsVS	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCTCcg/gTCTcg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913382		P-0082870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	123	487	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0082870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	87	441	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0082870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	135	283	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579575	7579579	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAC	GGGAC	-			P-0082870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	122	506	0	ENST00000269305.4:c.108_112del	p.Gln38AsnfsTer3	p.Q38Nfs*3	ENST00000269305	NM_001126112.2	36	ccGTCCCaa/ccaa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1422891742		P-0082872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	114	431	0	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0082872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	124	417	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0082872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	284	533	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SDHA	6389	MSKCC	GRCh37	5	233697	233697	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765180271		P-0082872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	72	289	0	ENST00000264932.6:c.1001C>T	p.Ala334Val	p.A334V	ENST00000264932	NM_004168.2	334	gCg/gTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81355257	81355257	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0082872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	81	436	0	ENST00000222390.5:c.1117C>T	p.Arg373Ter	p.R373*	ENST00000222390	NM_000601.4	373	Cga/Tga																																																																															
NUF2	83540	MSKCC	GRCh37	1	163325123	163325123	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0082872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	42	344	0	ENST00000271452.3:c.1261-2A>T		p.X421_splice	ENST00000271452	NM_145697.2	421																																																																																
AXL	558	MSKCC	GRCh37	19	41748913	41748913	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766672148		P-0082872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	305	609	0	ENST00000301178.4:c.1438C>T	p.Arg480Cys	p.R480C	ENST00000301178	NM_021913.4	480	Cgt/Tgt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459526	50459526	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			803	109	471	0	ENST00000331340.3:c.815C>A	p.Ala272Asp	p.A272D	ENST00000331340	NM_006060.4	272	gCc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0082875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	201	467	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0082875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	234	390	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52693388	52693388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	95	563	0	ENST00000322088.6:c.39C>G	p.Ile13Met	p.I13M	ENST00000322088	NM_014225.5	13	atC/atG																																																																															
DIS3	22894	MSKCC	GRCh37	13	73348143	73348143	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0082875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	33	385	0	ENST00000377767.4:c.1042A>C	p.Ile348Leu	p.I348L	ENST00000377767	NM_014953.3	348	Ata/Cta																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416080	49416080	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	99	532	0	ENST00000301067.7:c.16395G>T	p.Leu5465Phe	p.L5465F	ENST00000301067	NM_003482.3	5465	ttG/ttT																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250530	26250530	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1445488826		P-0082875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	142	706	0	ENST00000446824.2:c.304G>T	p.Val102Leu	p.V102L	ENST00000446824	NM_021018.2	102	Gtg/Ttg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001435	29001435	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0082875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			893	113	466	0	ENST00000282397.4:c.1297A>T	p.Lys433Ter	p.K433*	ENST00000282397	NM_002019.4	433	Aag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175000	112175000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0082877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	229	380	0	ENST00000257430.4:c.3709C>T	p.Gln1237Ter	p.Q1237*	ENST00000257430	NM_000038.5	1237	Cag/Tag																																																																															
KDR	3791	MSKCC	GRCh37	4	55968660	55968660	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199774865		P-0082877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	235	352	1	ENST00000263923.4:c.2003C>T	p.Thr668Met	p.T668M	ENST00000263923	NM_002253.2	668	aCg/aTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910789	32910789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	140	414	0	ENST00000380152.3:c.2297C>T	p.Ala766Val	p.A766V	ENST00000380152		766	gCc/gTc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95591005	95591005	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0082877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	127	324	0	ENST00000343455.3:c.904del	p.Ile302TyrfsTer10	p.I302Yfs*10	ENST00000343455	NM_177438.2	302	Ata/ta																																																																															
NF2	4771	MSKCC	GRCh37	22	30032845	30032845	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	174	420	0	ENST00000338641.4:c.220T>C	p.Trp74Arg	p.W74R	ENST00000338641	NM_000268.3	74	Tgg/Cgg																																																																															
APC	324	MSKCC	GRCh37	5	112151292	112151292	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0082877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	118	286	0	ENST00000257430.4:c.933+2T>C		p.X311_splice	ENST00000257430	NM_000038.5	311																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0082897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	21	252	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057520000		P-0082897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	50	474	0	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440430	49440431	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0082897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	114	486	0	ENST00000301067.7:c.4379dup	p.Leu1461ThrfsTer30	p.L1461Tfs*30	ENST00000301067	NM_003482.3	1460	cca/ccCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0082897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	50	284	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971185	21971194	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGCGCTGC	CGGGCGCTGC	-			P-0082897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	56	453	0	ENST00000304494.5:c.164_173del	p.Gly55GlufsTer88	p.G55Efs*88	ENST00000304494	NM_000077.4	55	gGCAGCGCCCGa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0082900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	54	290	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640502	3640502	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1008752654		P-0082900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	87	564	3	ENST00000294008.3:c.3137G>A	p.Arg1046His	p.R1046H	ENST00000294008	NM_032444.2	1046	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	86	464	3	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468516	89468516	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1453560937		P-0082900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	56	429	2	ENST00000336596.2:c.2050C>T	p.Arg684Ter	p.R684*	ENST00000336596	NM_005233.5	684	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173590	112173590	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0082900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	58	447	0	ENST00000257430.4:c.2299C>T	p.Gln767Ter	p.Q767*	ENST00000257430	NM_000038.5	767	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0082900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	106	542	2	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968293	2968293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	27	353	0	ENST00000396946.4:c.1693G>A	p.Ala565Thr	p.A565T	ENST00000396946	NM_032415.4	565	Gcc/Acc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10259678	10259678	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0082900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	47	341	0	ENST00000340748.4:c.2554G>T	p.Glu852Ter	p.E852*	ENST00000340748		852	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0082901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	52	502	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0082901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	41	250	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CIC	23152	MSKCC	GRCh37	19	42796732	42796741	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCTGGCTC	CTGCTGGCTC	-			P-0082901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	37	487	0	ENST00000575354.2:c.3191_3200del	p.Leu1064ProfsTer26	p.L1064Pfs*26	ENST00000575354	NM_015125.3	1064	CTGCTGGCTCcc/cc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0082903-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	86	350	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082903-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	63	338	0	ENST00000281708.4:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000281708	NM_033632.3	545	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0082903-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	106	385	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0082904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	101	318	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93969185	93969185	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	130	454	0	ENST00000369303.4:c.1811G>T	p.Gly604Val	p.G604V	ENST00000369303	NM_004440.3	604	gGc/gTc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59857726	59857726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	87	344	0	ENST00000259008.2:c.1831G>T	p.Val611Phe	p.V611F	ENST00000259008	NM_032043.2	611	Gtt/Ttt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38188997	38188997	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0082904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	98	383	0	ENST00000317025.8:c.1017A>T	p.Leu339Phe	p.L339F	ENST00000317025	NM_023034.1	339	ttA/ttT																																																																															
TSC2	7249	MSKCC	GRCh37	16	2127688	2127688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	357	553	0	ENST00000219476.3:c.2927G>T	p.Arg976Leu	p.R976L	ENST00000219476	NM_000548.3	976	cGg/cTg																																																																															
ATR	545	MSKCC	GRCh37	3	142188280	142188280	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	67	425	0	ENST00000350721.4:c.6451C>G	p.His2151Asp	p.H2151D	ENST00000350721	NM_001184.3	2151	Cat/Gat																																																																															
POT1	25913	MSKCC	GRCh37	7	124499049	124499049	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	52	354	0	ENST00000357628.3:c.664G>T	p.Val222Phe	p.V222F	ENST00000357628	NM_015450.2	222	Gtc/Ttc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115940	8115940	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	163	574	0	ENST00000346208.3:c.1287del	p.Phe430LeufsTer45	p.F430Lfs*45	ENST00000346208		429	tCc/tc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0062171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	112	525	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0062171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	154	438	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911108	29911108	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199474502		P-0062171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	114	558	1	ENST00000376809.5:c.407G>A	p.Gly136Glu	p.G136E	ENST00000376809	NM_002116.7	136	gGg/gAg																																																																															
ARAF	369	MSKCC	GRCh37	X	47430797	47430797	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1168869454		P-0062171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	142	608	0	ENST00000377045.4:c.1762C>T	p.Arg588Cys	p.R588C	ENST00000377045	NM_001654.4	588	Cgc/Tgc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109873	115109874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0062171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	130	560	0	ENST00000257566.3:c.2004dup	p.Pro669AlafsTer23	p.P669Afs*23	ENST00000257566	NM_016569.3	668	-/G																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513442	149513442	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0062171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	202	586	0	ENST00000261799.4:c.759+2T>A		p.X253_splice	ENST00000261799	NM_002609.3	253																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176520177	176520177	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	164	566	0	ENST00000292408.4:c.1096A>G	p.Arg366Gly	p.R366G	ENST00000292408	NM_213647.1	366	Agg/Ggg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0082498-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			233	142	310	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37863249	37863249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082498-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			354	42	412	0	ENST00000269571.5:c.80C>T	p.Thr27Ile	p.T27I	ENST00000269571		27	aCc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577091	7577092	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCGGTCTCTCCCAGGACAGGCACAAACACGCACCTCAAAGCTGTT			P-0082498-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			498	49	463	0	ENST00000269305.4:c.802_846dup	p.Asn268_Arg282dup	p.N268_R282dup	ENST00000269305	NM_001126112.2	268	-/AACAGCTTTGAGGTGCGTGTTTGTGCCTGTCCTGGGAGAGACCGG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0082815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	105	551	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0082815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	51	280	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112155032	112155032	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0082815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	127	409	0	ENST00000257430.4:c.1307del	p.Asn436IlefsTer18	p.N436Ifs*18	ENST00000257430	NM_000038.5	435	Aaa/aa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945733	38945733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	165	410	0	ENST00000357387.3:c.4493C>T	p.Ser1498Leu	p.S1498L	ENST00000357387	NM_152756.3	1498	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579315	7579316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1267047192		P-0082818-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	197	376	0	ENST00000269305.4:c.371dup	p.Cys124TrpfsTer25	p.C124Wfs*25	ENST00000269305	NM_001126112.2	124	tgc/tgGc																																																																															
APC	324	MSKCC	GRCh37	5	112175536	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0082818-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	152	352	0	ENST00000257430.4:c.4245del	p.Ser1415ArgfsTer4	p.S1415Rfs*4	ENST00000257430	NM_000038.5	1415	agT/ag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0082818-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	92	319	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624783	9624783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082818-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	78	336	0	ENST00000353224.5:c.194C>T	p.Ala65Val	p.A65V	ENST00000353224	NM_177990.2	65	gCt/gTt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86676332	86676332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082818-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	176	286	0	ENST00000274376.6:c.2610G>T	p.Leu870Phe	p.L870F	ENST00000274376	NM_002890.2	870	ttG/ttT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211268	36211268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082818-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	230	447	0	ENST00000222270.7:c.1019C>T	p.Pro340Leu	p.P340L	ENST00000222270	NM_014727.1	340	cCc/cTc																																																																															
RAC1	5879	MSKCC	GRCh37	7	6441505	6441507	+	frameshift_variant	Frame_Shift_Ins	INS	CCT	CCT	TCTGAGGTGC			P-0082818-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	67	280	0	ENST00000356142.4:c.352_354delinsTCTGAGGTGC	p.Pro118SerfsTer20	p.P118Sfs*20	ENST00000356142	NM_018890.3	118	CCT/TCTGAGGTGC																																																																															
TP53	7157	MSKCC	GRCh37	17	7574026	7574026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	132	419	0	ENST00000269305.4:c.1001G>T	p.Gly334Val	p.G334V	ENST00000269305	NM_001126112.2	334	gGg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057727	27057727	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0082884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	185	677	0	ENST00000324856.7:c.1435C>T	p.Gln479Ter	p.Q479*	ENST00000324856	NM_006015.4	479	Cag/Tag																																																																															
RB1	5925	MSKCC	GRCh37	13	49030378	49030378	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0082884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	113	461	0	ENST00000267163.4:c.1853C>G	p.Ser618Ter	p.S618*	ENST00000267163	NM_000321.2	618	tCa/tGa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251742	212251742	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	114	532	0	ENST00000342788.4:c.3317G>T	p.Cys1106Phe	p.C1106F	ENST00000342788	NM_005235.2	1106	tGc/tTc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530084	212530084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	89	471	0	ENST00000342788.4:c.1835G>T	p.Arg612Leu	p.R612L	ENST00000342788	NM_005235.2	612	cGg/cTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290954	15290954	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	147	643	0	ENST00000263388.2:c.3256del	p.Asp1086ThrfsTer186	p.D1086Tfs*186	ENST00000263388	NM_000435.2	1086	Gac/ac																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514608	103514608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	92	583	0	ENST00000355739.4:c.1109G>T	p.Arg370Leu	p.R370L	ENST00000355739	NM_000123.3	370	cGt/cTt																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47601064	47601065	+	missense_variant	Missense_Mutation	DNP	AG	AG	TT			P-0082884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	51	510	0	ENST00000263735.4:c.302_303delinsTT	p.Glu101Val	p.E101V	ENST00000263735	NM_002354.2	101	gAG/gTT																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569751	95569751	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0082884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	193	591	0	ENST00000343455.3:c.3982A>T	p.Thr1328Ser	p.T1328S	ENST00000343455	NM_177438.2	1328	Acc/Tcc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738281	145738281	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	150	634	0	ENST00000428558.2:c.2704C>G	p.Arg902Gly	p.R902G	ENST00000428558	NM_004260.3	902	Cgg/Ggg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3795316	3795490	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGATGCATCTTCCGGCCACACTCCTTGCAATCAACGAAACTAGGAGGCAAAGAAGGCGCACTGTTAAAGCACACGGAACCACAAGACCAGAGTCACTTGTAGAAGTCTGTGTGTGCGTCCACACCTTGTTCTCTGGGTTACTTTGAGTAGTGCTGACATTAATGCGTGTGTTGG	CTGATGCATCTTCCGGCCACACTCCTTGCAATCAACGAAACTAGGAGGCAAAGAAGGCGCACTGTTAAAGCACACGGAACCACAAGACCAGAGTCACTTGTAGAAGTCTGTGTGTGCGTCCACACCTTGTTCTCTGGGTTACTTTGAGTAGTGCTGACATTAATGCGTGTGTTGG	-			P-0082884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	67	549	0	ENST00000262367.5:c.3837-135_3876del		p.X1279_splice	ENST00000262367	NM_004380.2	1279																																																																																
ALB	213	MSKCC	GRCh37	4	74280813	74280813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	57	443	0	ENST00000295897.4:c.1120G>A	p.Ala374Thr	p.A374T	ENST00000295897	NM_000477.5	374	Gcc/Acc																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488893	231488894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs567805129		P-0082885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	90	390	0	ENST00000295050.7:c.1263dup	p.Ile422TyrfsTer11	p.I422Yfs*11	ENST00000295050	NM_032018.5	419	aat/aaTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0082885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	121	541	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458467	120458500	+	frameshift_variant	Frame_Shift_Del	DEL	TGCTTCCCTTCAGGTGGCCTGCTCTGGGGAGCTA	TGCTTCCCTTCAGGTGGCCTGCTCTGGGGAGCTA	-			P-0082885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	156	564	0	ENST00000256646.2:c.6845_6878del	p.Ile2282ThrfsTer2	p.I2282Tfs*2	ENST00000256646	NM_024408.3	2282	aTAGCTCCCCAGAGCAGGCCACCTGAAGGGAAGCAc/ac																																																																															
NF1	4763	MSKCC	GRCh37	17	29684355	29684355	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TAAGTATT			P-0082885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	26	394	0	ENST00000358273.4:c.7938delinsTAAGTATT	p.Ser2647LysfsTer3	p.S2647Kfs*3	ENST00000358273	NM_001042492.2	2646	gcC/gcTAAGTATT																																																																															
HGF	3082	MSKCC	GRCh37	7	81374327	81374418	+	frameshift_variant	Frame_Shift_Del	DEL	GAATTTGTGCCGGTGTGGTGTCTGATGATCCCAGCGCTGACAAATCTTGCCTGATTCTGTATGATCCATGAGACCTCGATAACTCTCCCCAT	GAATTTGTGCCGGTGTGGTGTCTGATGATCCCAGCGCTGACAAATCTTGCCTGATTCTGTATGATCCATGAGACCTCGATAACTCTCCCCAT	ATTATTAGTTGAA			P-0082885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	45	271	0	ENST00000222390.5:c.644_735delinsTTCAACTAATAAT	p.Asn215IlefsTer53	p.N215Ifs*53	ENST00000222390	NM_000601.4	215	aATGGGGAGAGTTATCGAGGTCTCATGGATCATACAGAATCAGGCAAGATTTGTCAGCGCTGGGATCATCAGACACCACACCGGCACAAATTC/aTTCAACTAATAAT																																																																															
ABL1	25	MSKCC	GRCh37	9	133750327	133750327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	100	410	0	ENST00000318560.5:c.1158G>T	p.Arg386Ser	p.R386S	ENST00000318560	NM_005157.4	386	agG/agT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0082886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			30	102	221	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68849663	68849663	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587780113		P-0082886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			28	165	442	0	ENST00000261769.5:c.1565+1G>A		p.X522_splice	ENST00000261769	NM_004360.3	522																																																																																
TP53	7157	MSKCC	GRCh37	17	7577123	7577123	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			49	173	476	0	ENST00000269305.4:c.815T>C	p.Val272Ala	p.V272A	ENST00000269305	NM_001126112.2	272	gTg/gCg																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239081	31239081	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41544015		P-0082886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	166	591	0	ENST00000376228.5:c.388G>A	p.Asp130Asn	p.D130N	ENST00000376228	NM_002117.5	130	Gac/Aac																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013744	12013744	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0082886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			15	52	278	0	ENST00000353533.5:c.685+1G>T		p.X229_splice	ENST00000353533	NM_003010.3	229																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0082886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	110	267	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KDR	3791	MSKCC	GRCh37	4	55955914	55955914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	77	361	0	ENST00000263923.4:c.3248C>T	p.Thr1083Ile	p.T1083I	ENST00000263923	NM_002253.2	1083	aCa/aTa																																																																															
RB1	5925	MSKCC	GRCh37	13	48919307	48919307	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0082886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			57	59	303	0	ENST00000267163.4:c.473del	p.Leu158CysfsTer17	p.L158Cfs*17	ENST00000267163	NM_000321.2	158	Ttg/tg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171706	36171706	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	58	513	0	ENST00000300305.3:c.859T>C	p.Tyr287His	p.Y287H	ENST00000300305		287	Tac/Cac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044943	47044943	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0082891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	113	305	0	ENST00000329236.7:c.2035C>T	p.Gln679Ter	p.Q679*	ENST00000329236	NM_001204466.1	679	Cag/Tag																																																																															
RAC1	5879	MSKCC	GRCh37	7	6414399	6414399	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0082891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	20	227	0	ENST00000356142.4:c.33C>A	p.Asp11Glu	p.D11E	ENST00000356142	NM_018890.3	11	gaC/gaA																																																																															
STK11	6794	MSKCC	GRCh37	19	1207020	1207020	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0082891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	108	512	0	ENST00000326873.7:c.108C>G	p.Tyr36Ter	p.Y36*	ENST00000326873	NM_000455.4	36	taC/taG																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602301	10602301	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	90	556	0	ENST00000171111.5:c.1277A>G	p.Tyr426Cys	p.Y426C	ENST00000171111	NM_203500.1	426	tAt/tGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822328	72822328	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	95	679	0	ENST00000268489.5:c.9847del	p.Val3283Ter	p.V3283*	ENST00000268489	NM_006885.3	3283	Gta/ta																																																																															
RHOA	387	MSKCC	GRCh37	3	49412941	49412941	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	93	453	0	ENST00000418115.1:c.82G>T	p.Asp28Tyr	p.D28Y	ENST00000418115	NM_001664.2	28	Gac/Tac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057934	27057946	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCCCCCCTACT	CAGCCCCCCTACT	-			P-0082891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	46	716	0	ENST00000324856.7:c.1644_1656del	p.Gln548HisfsTer67	p.Q548Hfs*67	ENST00000324856	NM_006015.4	548	CAGCCCCCCTACTca/ca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485845	8485845	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0082891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	67	466	0	ENST00000356435.5:c.2972A>C	p.Asp991Ala	p.D991A	ENST00000356435		991	gAt/gCt																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699240	117699240	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	82	370	0	ENST00000369458.3:c.401C>G	p.Thr134Ser	p.T134S	ENST00000369458	NM_024626.3	134	aCt/aGt																																																																															
GAB1	2549	MSKCC	GRCh37	4	144361478	144361478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	80	554	0	ENST00000262994.4:c.1528C>T	p.Pro510Ser	p.P510S	ENST00000262994	NM_002039.3	510	Cct/Tct																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2494626	2494626	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0082891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	86	503	0	ENST00000355716.4:c.766G>T	p.Glu256Ter	p.E256*	ENST00000355716	NM_003820.2	256	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446434	49446434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	95	525	0	ENST00000301067.7:c.1171G>A	p.Ala391Thr	p.A391T	ENST00000301067	NM_003482.3	391	Gca/Aca																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612740	228612740	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747322437		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			571	263	701	1	ENST00000366696.1:c.287C>T	p.Ala96Val	p.A96V	ENST00000366696	NM_003493.2	96	gCg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092739	27092740	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			583	44	513	0	ENST00000324856.7:c.2765dup	p.Met923HisfsTer13	p.M923Hfs*13	ENST00000324856	NM_006015.4	920	-/G																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			667	142	603	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101282	27101282	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199776442		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			489	209	644	0	ENST00000324856.7:c.4564G>A	p.Ala1522Thr	p.A1522T	ENST00000324856	NM_006015.4	1522	Gcc/Acc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123260369	123260369	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770309121		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	215	447	0	ENST00000358487.5:c.1532C>T	p.Ala511Val	p.A511V	ENST00000358487	NM_000141.4	511	gCg/gTg																																																																															
EED	8726	MSKCC	GRCh37	11	85961344	85961344	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138343311		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	137	445	0	ENST00000263360.6:c.121G>A	p.Ala41Thr	p.A41T	ENST00000263360	NM_003797.3	41	Gct/Act																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811605	102811605	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			568	277	603	4	ENST00000307046.8:c.579del	p.Gly194GlufsTer8	p.G194Efs*8	ENST00000307046	NM_001111285.1	193	aaA/aa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871053	12871053	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	431	584	0	ENST00000228872.4:c.285del	p.Gly97ValfsTer22	p.G97Vfs*22	ENST00000228872	NM_004064.3	94	Ccc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420203	49420204	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			563	343	663	0	ENST00000301067.7:c.15545dup	p.Leu5183ProfsTer16	p.L5183Pfs*16	ENST00000301067	NM_003482.3	5182	ggc/ggGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427360	49427360	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757243984		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			508	264	572	0	ENST00000301067.7:c.11128G>A	p.Gly3710Arg	p.G3710R	ENST00000301067	NM_003482.3	3710	Gga/Aga																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864118	57864118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200306754		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			546	323	577	0	ENST00000228682.2:c.1595G>A	p.Arg532His	p.R532H	ENST00000228682	NM_005269.2	532	cGc/cAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435300	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-	rs765493638		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			482	243	612	8	ENST00000375856.3:c.3099_3101del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1033	ccACCg/ccg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2124201	2124201	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs767252128		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			534	127	526	0	ENST00000219476.3:c.2356C>T	p.Arg786Cys	p.R786C	ENST00000219476	NM_000548.3	786	Cgc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829302	72829302	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs924588701		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			413	215	502	0	ENST00000268489.5:c.7279G>A	p.Asp2427Asn	p.D2427N	ENST00000268489	NM_006885.3	2427	Gat/Aat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			548	282	706	0	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544624	86544624	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1484329217		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	205	604	0	ENST00000262426.4:c.449C>T	p.Ala150Val	p.A150V	ENST00000262426	NM_001451.2	150	gCg/gTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89857881	89857881	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772567344		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	278	546	0	ENST00000389301.3:c.1289C>T	p.Ala430Val	p.A430V	ENST00000389301	NM_000135.2	430	gCg/gTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89871699	89871699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			407	218	462	0	ENST00000389301.3:c.698C>T	p.Ala233Val	p.A233V	ENST00000389301	NM_000135.2	233	gCc/gTc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436098	56436098	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780224400		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			550	427	720	0	ENST00000407977.2:c.1039G>A	p.Gly347Ser	p.G347S	ENST00000407977		347	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			209	320	484	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39542545	39542545	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750067845		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			595	49	474	1	ENST00000262039.4:c.349G>A	p.Gly117Arg	p.G117R	ENST00000262039	NM_002647.2	117	Gga/Aga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276647	15276647	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780169747		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			623	66	681	0	ENST00000263388.2:c.5618G>A	p.Arg1873His	p.R1873H	ENST00000263388	NM_000435.2	1873	cGc/cAc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226881	2226881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1303690024		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			443	228	670	0	ENST00000398665.3:c.4361C>T	p.Ala1454Val	p.A1454V	ENST00000398665	NM_032482.2	1454	gCg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36215971	36215971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			532	228	584	0	ENST00000222270.7:c.3511G>A	p.Val1171Ile	p.V1171I	ENST00000222270	NM_014727.1	1171	Gtc/Atc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224677	36224677	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199585947		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			540	197	667	0	ENST00000222270.7:c.7063C>T	p.Arg2355Trp	p.R2355W	ENST00000222270	NM_014727.1	2355	Cgg/Tgg																																																																															
CD79A	973	MSKCC	GRCh37	19	42383182	42383182	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782657641		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			660	80	615	0	ENST00000221972.3:c.202C>T	p.Arg68Cys	p.R68C	ENST00000221972	NM_021601.3	68	Cgc/Tgc																																																																															
ERF	2077	MSKCC	GRCh37	19	42752817	42752817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			556	239	689	0	ENST00000222329.4:c.1447C>T	p.Arg483Cys	p.R483C	ENST00000222329	NM_006494.2	483	Cgc/Tgc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			514	325	681	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464463	25464463	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758490363		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			294	235	472	0	ENST00000264709.3:c.2050G>A	p.Val684Ile	p.V684I	ENST00000264709	NM_175629.2	684	Gtc/Atc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637384	47637384	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs63750070		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			201	247	579	0	ENST00000233146.2:c.518T>C	p.Leu173Pro	p.L173P	ENST00000233146	NM_000251.2	173	cTa/cCa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			451	63	599	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			585	193	673	10	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928978	49928978	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs200454353		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			490	326	657	0	ENST00000296474.3:c.3388C>T	p.Arg1130Ter	p.R1130*	ENST00000296474	NM_002447.2	1130	Cga/Tga																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934279	49934279	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757719557		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			716	96	635	1	ENST00000296474.3:c.2228C>T	p.Thr743Met	p.T743M	ENST00000296474	NM_002447.2	743	aCg/aTg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498522	89498522	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			392	156	372	0	ENST00000336596.2:c.2494G>A	p.Asp832Asn	p.D832N	ENST00000336596	NM_005233.5	832	Gat/Aat																																																																															
GAB1	2549	MSKCC	GRCh37	4	144336666	144336666	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs529157593		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			349	58	435	0	ENST00000262994.4:c.109C>T	p.Arg37Cys	p.R37C	ENST00000262994	NM_002039.3	37	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112116551	112116551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748193367		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			264	188	426	0	ENST00000257430.4:c.596C>T	p.Ala199Val	p.A199V	ENST00000257430	NM_000038.5	199	gCg/gTg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520274	176520274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	235	516	0	ENST00000292408.4:c.1193G>A	p.Arg398Gln	p.R398Q	ENST00000292408	NM_213647.1	398	cGg/cAg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057281	180057281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142252978		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			536	113	596	0	ENST00000261937.6:c.457G>A	p.Ala153Thr	p.A153T	ENST00000261937	NM_182925.4	153	Gcc/Acc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31409427	31409427	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1195955783		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			346	182	491	0	ENST00000344624.3:c.3680C>T	p.Ala1227Val	p.A1227V	ENST00000344624		1227	gCg/gTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56152491	56152491	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			550	263	527	0	ENST00000399503.3:c.547C>T	p.Arg183Ter	p.R183*	ENST00000399503	NM_005921.1	183	Cga/Tga																																																																															
MSH3	4437	MSKCC	GRCh37	5	80057459	80057459	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200337887		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			314	242	443	1	ENST00000265081.6:c.1858G>A	p.Asp620Asn	p.D620N	ENST00000265081	NM_002439.4	620	Gac/Aac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			533	295	643	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874147	151874148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs771193709		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			516	199	547	14	ENST00000262189.6:c.8390dup	p.Glu2798GlyfsTer11	p.E2798Gfs*11	ENST00000262189	NM_170606.2	2797	aag/aaAg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026958	6026958	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146848345		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			88	44	97	0	ENST00000265849.7:c.1438G>A	p.Gly480Arg	p.G480R	ENST00000265849	NM_000535.5	480	Gga/Aga																																																																															
SYK	6850	MSKCC	GRCh37	9	93624537	93624537	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1237227040		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			490	179	526	1	ENST00000375746.1:c.628G>A	p.Glu210Lys	p.E210K	ENST00000375746	NM_001174167.1	210	Gaa/Aaa																																																																															
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137852581		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			185	184	237	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																															
AR	367	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs137852578		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			290	100	238	1	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256244	16256245	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			599	131	645	0	ENST00000375759.3:c.3513dup	p.Gln1172ThrfsTer7	p.Q1172Tfs*7	ENST00000375759	NM_015001.2	1170	cga/cgAa																																																																															
ATM	472	MSKCC	GRCh37	11	108123605	108123605	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			281	33	368	0	ENST00000278616.4:c.1864G>T	p.Ala622Ser	p.A622S	ENST00000278616	NM_000051.3	622	Gct/Tct																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94203744	94203744	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770429536		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	106	436	0	ENST00000323929.3:c.910G>A	p.Val304Met	p.V304M	ENST00000323929	NM_005591.3	304	Gtg/Atg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863217	57863217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			433	300	556	0	ENST00000228682.2:c.1312C>T	p.Pro438Ser	p.P438S	ENST00000228682	NM_005269.2	438	Cca/Tca																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103504607	103504609	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			358	190	441	0	ENST00000355739.4:c.230_232del	p.Asp77del	p.D77del	ENST00000355739	NM_000123.3	76	ttTGAt/ttt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953994	32953994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	200	499	0	ENST00000380152.3:c.9061G>A	p.Glu3021Lys	p.E3021K	ENST00000380152		3021	Gaa/Aaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060669	38060671	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			671	307	711	0	ENST00000250448.2:c.1318_1320del	p.Gly440del	p.G440del	ENST00000250448	NM_004496.3	440	GGC/-																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15935642	15935642	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			203	375	580	0	ENST00000268712.3:c.7291C>T	p.Gln2431Ter	p.Q2431*	ENST00000268712	NM_006311.3	2431	Cag/Tag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18974252	18974252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			543	46	510	0	ENST00000262803.5:c.2606G>A	p.Gly869Asp	p.G869D	ENST00000262803	NM_002911.3	869	gGc/gAc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30314667	30314667	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs926232732		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			466	183	573	0	ENST00000262643.3:c.1216G>A	p.Gly406Arg	p.G406R	ENST00000262643	NM_001238.2	406	Ggg/Agg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219774	36219775	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			484	215	614	0	ENST00000222270.7:c.4675dup	p.Asp1559GlyfsTer119	p.D1559Gfs*119	ENST00000222270	NM_014727.1	1557	-/G																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906340	50906340	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			446	132	515	0	ENST00000440232.2:c.1001T>A	p.Val334Asp	p.V334D	ENST00000440232	NM_002691.3	334	gTc/gAc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445986	29445986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	268	534	0	ENST00000544604.2:c.1817G>A	p.Arg606His	p.R606H	ENST00000544604	NM_001206998.1	606	cGt/cAt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933220	49933220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			497	355	699	0	ENST00000296474.3:c.2890C>T	p.Pro964Ser	p.P964S	ENST00000296474	NM_002447.2	964	Cct/Tct																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155737	56155737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			480	203	439	0	ENST00000399503.3:c.829G>A	p.Val277Met	p.V277M	ENST00000399503	NM_005921.1	277	Gtg/Atg																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032285	26032285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			485	237	468	0	ENST00000244661.2:c.4G>A	p.Ala2Thr	p.A2T	ENST00000244661	NM_003537.3	2	Gct/Act																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672353	30672353	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs9262151		P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			690	489	854	0	ENST00000376406.3:c.4607A>T	p.Glu1536Val	p.E1536V	ENST00000376406	NM_014641.2	1536	gAg/gTg																																																																															
IRF4	3662	MSKCC	GRCh37	6	393159	393159	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			508	51	481	0	ENST00000380956.4:c.7C>A	p.Leu3Met	p.L3M	ENST00000380956	NM_001195286.1	3	Ctg/Atg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38139097	38139097	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			301	232	430	0	ENST00000317025.8:c.3506A>G	p.Glu1169Gly	p.E1169G	ENST00000317025	NM_023034.1	1169	gAa/gGa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410904	63410904	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			86	273	323	0	ENST00000330258.3:c.2263G>T	p.Glu755Ter	p.E755*	ENST00000330258	NM_152424.3	755	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0082784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	23	256	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0082784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	27	319	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851558	134851558	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs770155473		P-0082784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	53	372	0	ENST00000398015.3:c.964G>A	p.Val322Ile	p.V322I	ENST00000398015	NM_004441.4	322	Gtc/Atc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426420	47426420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1020990103		P-0082784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			842	79	738	0	ENST00000377045.4:c.763C>T	p.Arg255Trp	p.R255W	ENST00000377045	NM_001654.4	255	Cgg/Tgg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295246	1295246	+	upstream_gene_variant	5'Flank	SNP	C	C	T	rs1245142830		P-0082784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	31	462	0				ENST00000310581	NM_198253.2																																																																																	
EPHA7	2045	MSKCC	GRCh37	6	94066686	94066686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	59	465	0	ENST00000369303.4:c.1073G>A	p.Gly358Glu	p.G358E	ENST00000369303	NM_004440.3	358	gGg/gAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0082784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	54	274	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ARAF	369	MSKCC	GRCh37	X	47424651	47424651	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs779536112		P-0082784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	53	602	0	ENST00000377045.4:c.459G>T	p.Gln153His	p.Q153H	ENST00000377045	NM_001654.4	153	caG/caT																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789643	3789643	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	84	531	0	ENST00000262367.5:c.4216G>C	p.Asp1406His	p.D1406H	ENST00000262367	NM_004380.2	1406	Gat/Cat																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416188	416188	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	65	450	1	ENST00000399788.2:c.3998G>C	p.Arg1333Pro	p.R1333P	ENST00000399788	NM_001042603.1	1333	cGa/cCa																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818923	32818923	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0082784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	131	464	0	ENST00000354258.4:c.1028A>C	p.Asn343Thr	p.N343T	ENST00000354258	NM_000593.5	343	aAc/aCc																																																																															
JUN	3725	MSKCC	GRCh37	1	59248437	59248438	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTCT			P-0082784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	42	677	0	ENST00000371222.2:c.302_305dup	p.Asn102LysfsTer6	p.N102Kfs*6	ENST00000371222	NM_002228.3	102	aac/aaAGAAc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066719	94066719	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	54	491	0	ENST00000369303.4:c.1040T>C	p.Val347Ala	p.V347A	ENST00000369303	NM_004440.3	347	gTa/gCa																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926922	112926922	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	56	379	0	ENST00000351677.2:c.1542C>G	p.Ile514Met	p.I514M	ENST00000351677	NM_002834.3	514	atC/atG																																																																															
APC	324	MSKCC	GRCh37	5	112163704	112163704	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0082784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	35	289	0	ENST00000257430.4:c.1626+1G>A		p.X542_splice	ENST00000257430	NM_000038.5	542																																																																																
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0082847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	348	488	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0082847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	218	506	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0082847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	175	551	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs760043106		P-0082847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	207	602	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974721	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	204	512	1	ENST00000304494.5:c.106del	p.Ala36ArgfsTer17	p.A36Rfs*17	ENST00000304494	NM_000077.4	36	Gcg/cg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49419968	49419968	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	165	513	0	ENST00000301067.7:c.15781del	p.Gln5261ArgfsTer14	p.Q5261Rfs*14	ENST00000301067	NM_003482.3	5261	Cag/ag																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805695	46805695	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0082847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	159	520	0	ENST00000290295.7:c.261C>A	p.Tyr87Ter	p.Y87*	ENST00000290295	NM_006361.5	87	taC/taA																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240343	41240343	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	79	340	0	ENST00000379561.5:c.7G>C	p.Glu3Gln	p.E3Q	ENST00000379561	NM_002015.3	3	Gag/Cag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096105	178096106	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0082847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	237	587	0	ENST00000397062.3:c.1224_1225dup	p.Pro409HisfsTer25	p.P409Hfs*25	ENST00000397062	NM_006164.4	409	cca/cACca																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223538	53223538	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0082847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	141	271	0	ENST00000375401.3:c.3821A>T	p.Glu1274Val	p.E1274V	ENST00000375401	NM_004187.3	1274	gAg/gTg																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230468649	230468649	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	204	583	0	ENST00000525115.1:c.1007G>C	p.Cys336Ser	p.C336S	ENST00000525115		336	tGc/tCc																																																																															
KIT	3815	MSKCC	GRCh37	4	55569902	55569902	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	100	314	0	ENST00000288135.5:c.769G>C	p.Glu257Gln	p.E257Q	ENST00000288135	NM_000222.2	257	Gag/Cag																																																																															
NUF2	83540	MSKCC	GRCh37	1	163295860	163295860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	118	379	0	ENST00000271452.3:c.19C>T	p.Pro7Ser	p.P7S	ENST00000271452	NM_145697.2	7	Ccc/Tcc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18966754	18966754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	55	455	0	ENST00000262803.5:c.1565C>T	p.Pro522Leu	p.P522L	ENST00000262803	NM_002911.3	522	cCg/cTg																																																																															
ATM	472	MSKCC	GRCh37	11	108178711	108178711	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0082849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	54	324	0	ENST00000278616.4:c.5762G>A	p.Arg1921Lys	p.R1921K	ENST00000278616	NM_000051.3	1921	aGa/aAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0082849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	29	315	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912126	114912126	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	62	405	0	ENST00000543371.1:c.1196A>G	p.Tyr399Cys	p.Y399C	ENST00000543371	NM_001198531.1	399	tAc/tGc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291471	10291471	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	47	384	0	ENST00000340748.4:c.208A>G	p.Lys70Glu	p.K70E	ENST00000340748		70	Aaa/Gaa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46256696	46256696	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768977330		P-0080895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	27	393	0	ENST00000371998.3:c.752G>A	p.Arg251His	p.R251H	ENST00000371998		251	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579346	7579346	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0082344-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	129	621	0	ENST00000269305.4:c.341T>A	p.Leu114Ter	p.L114*	ENST00000269305	NM_001126112.2	114	tTg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0082344-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	34	369	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089679	27089731	+	frameshift_variant	Frame_Shift_Del	DEL	GTTGGGTCAGGGATGTGTCCCCCACCAGGGGGCATGAACCGGAAAACCCAAGA	GTTGGGTCAGGGATGTGTCCCCCACCAGGGGGCATGAACCGGAAAACCCAAGA	-			P-0082344-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	123	699	0	ENST00000324856.7:c.2635_2687del	p.Val879AsnfsTer39	p.V879Nfs*39	ENST00000324856	NM_006015.4	879	GTTGGGTCAGGGATGTGTCCCCCACCAGGGGGCATGAACCGGAAAACCCAAGAa/a																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860399	151860402	+	frameshift_variant	Frame_Shift_Del	DEL	TCTA	TCTA	-			P-0082344-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	111	666	0	ENST00000262189.6:c.10260_10263del	p.Arg3421LysfsTer20	p.R3421Kfs*20	ENST00000262189	NM_170606.2	3420	gaTAGA/ga																																																																															
ATRX	546	MSKCC	GRCh37	X	76813055	76813055	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082344-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	18	308	0	ENST00000373344.5:c.6566T>C	p.Val2189Ala	p.V2189A	ENST00000373344	NM_000489.3	2189	gTt/gCt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11307727	11307727	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	48	520	0	ENST00000361445.4:c.1180A>G	p.Asn394Asp	p.N394D	ENST00000361445	NM_004958.3	394	Aat/Gat																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0082770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	320	503	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645875	67645875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	165	476	0	ENST00000264010.4:c.803G>T	p.Cys268Phe	p.C268F	ENST00000264010	NM_006565.3	268	tGt/tTt																																																																															
MYC	4609	MSKCC	GRCh37	8	128752902	128752902	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0082770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1100	84	564	0	ENST00000377970.2:c.1063C>T	p.Arg355Ter	p.R355*	ENST00000377970	NM_002467.4	355	Cga/Tga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184086	56184086	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	133	467	0	ENST00000399503.3:c.4291G>C	p.Asp1431His	p.D1431H	ENST00000399503	NM_005921.1	1431	Gat/Cat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168715	56168730	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGCAGCAGCCTTTG	ACAGCAGCAGCCTTTG	-			P-0082770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	160	486	0	ENST00000399503.3:c.1569_1584del	p.Gln524LeufsTer28	p.Q524Lfs*28	ENST00000399503	NM_005921.1	523	gtACAGCAGCAGCCTTTG/gt																																																																															
ATRX	546	MSKCC	GRCh37	X	76849194	76849194	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082773-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	242	461	0	ENST00000373344.5:c.6082del	p.Arg2028GlufsTer22	p.R2028Efs*22	ENST00000373344	NM_000489.3	2028	Cga/ga																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572288	64572291	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTG	CCTG	T			P-0082773-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	322	914	0	ENST00000337652.1:c.1366-3_1366delinsA		p.X456_splice	ENST00000337652	NM_130803.2	456																																																																																
TP53	7157	MSKCC	GRCh37	17	7578410	7578410	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0082775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	86	774	0	ENST00000269305.4:c.520A>T	p.Arg174Trp	p.R174W	ENST00000269305	NM_001126112.2	174	Agg/Tgg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061001	38061001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	180	767	2	ENST00000250448.2:c.988G>A	p.Ala330Thr	p.A330T	ENST00000250448	NM_004496.3	330	Gcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0082777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	46	315	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15976826	15976826	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0082777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	97	510	0	ENST00000268712.3:c.3728T>A	p.Leu1243Ter	p.L1243*	ENST00000268712	NM_006311.3	1243	tTa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0082800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	186	659	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106066	8106066	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	137	566	0	ENST00000346208.3:c.886C>A	p.Gln296Lys	p.Q296K	ENST00000346208		296	Cag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151960203	151960203	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0082800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	36	169	0	ENST00000262189.6:c.1197A>C	p.Glu399Asp	p.E399D	ENST00000262189	NM_170606.2	399	gaA/gaC																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781632	9781632	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	97	536	1	ENST00000377346.4:c.1942T>C	p.Phe648Leu	p.F648L	ENST00000377346	NM_005026.3	648	Ttc/Ctc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905534	50905534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	188	719	0	ENST00000440232.2:c.662C>T	p.Ala221Val	p.A221V	ENST00000440232	NM_002691.3	221	gCc/gTc																																																																															
CDH1	999	MSKCC	GRCh37	16	68845582	68845593	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCAGGAACCTC	TCCAGGAACCTC	-			P-0062003-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	62	302	1	ENST00000261769.5:c.833-4_840del		p.X278_splice	ENST00000261769	NM_004360.3	278																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	19	427	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	16	435	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279674	123279674	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs77543610		P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	33	459	0	ENST00000358487.5:c.758C>G	p.Pro253Arg	p.P253R	ENST00000358487	NM_000141.4	253	cCt/cGt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892162	9892162	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	26	466	0	ENST00000330684.3:c.2328C>A	p.Asp776Glu	p.D776E	ENST00000330684	NM_001134407.1	776	gaC/gaA																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72058592	72058592	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	20	357	0	ENST00000357731.5:c.848C>A	p.Thr283Asn	p.T283N	ENST00000357731	NM_173808.2	283	aCt/aAt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978681	70978681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	18	503	0	ENST00000276594.2:c.972G>T	p.Trp324Cys	p.W324C	ENST00000276594	NM_024504.3	324	tgG/tgT																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730075	41730075	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	15	462	0	ENST00000242208.4:c.454C>A	p.Arg152Ser	p.R152S	ENST00000242208	NM_002192.2	152	Cgt/Agt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G	rs730881677		P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	15	424	0	ENST00000304494.5:c.151-1G>C		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32190320	32190320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	15	405	0	ENST00000375023.3:c.419G>T	p.Arg140Leu	p.R140L	ENST00000375023	NM_004557.3	140	cGc/cTc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45799218	45799218	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	19	523	0	ENST00000372115.3:c.173C>A	p.Pro58Gln	p.P58Q	ENST00000372115	NM_001048171.1	58	cCg/cAg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865480	57865480	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	48	584	0	ENST00000228682.2:c.2957C>G	p.Ala986Gly	p.A986G	ENST00000228682	NM_005269.2	986	gCa/gGa																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17384766	17384767	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	44	475	1	ENST00000359435.4:c.398_399delinsCT	p.Arg133Pro	p.R133P	ENST00000359435	NM_001033549.1	133	cGG/cCT																																																																															
GNB1	2782	MSKCC	GRCh37	1	1736001	1736001	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	51	375	0	ENST00000378609.4:c.287G>T	p.Arg96Leu	p.R96L	ENST00000378609	NM_002074.3	96	cGc/cTc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858456	57858456	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	36	436	1	ENST00000228682.2:c.194G>T	p.Gly65Val	p.G65V	ENST00000228682	NM_005269.2	65	gGc/gTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29560109	29560109	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	22	454	0	ENST00000358273.4:c.3586C>G	p.Leu1196Val	p.L1196V	ENST00000358273	NM_001042492.2	1196	Ctt/Gtt																																																																															
ETV1	2115	MSKCC	GRCh37	7	14017103	14017103	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	19	298	0	ENST00000405192.2:c.184C>T	p.Gln62Ter	p.Q62*	ENST00000405192	NM_001163147.1	62	Cag/Tag																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873751	35873751	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	25	380	0	ENST00000303115.3:c.706+1G>T		p.X236_splice	ENST00000303115	NM_002185.3	236																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66356109	66356109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	14	412	0	ENST00000273854.3:c.1388C>A	p.Thr463Asn	p.T463N	ENST00000273854	NM_004439.5	463	aCc/aAc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190670399	190670399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	27	337	0	ENST00000441310.2:c.337G>T	p.Ala113Ser	p.A113S	ENST00000441310	NM_000534.4	113	Gct/Tct																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742504	17742504	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	15	415	0	ENST00000250003.3:c.687del	p.Tyr230ThrfsTer20	p.Y230Tfs*20	ENST00000250003	NM_002478.4	229	gCc/gc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39575935	39575935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	25	341	0	ENST00000262039.4:c.868G>A	p.Ala290Thr	p.A290T	ENST00000262039	NM_002647.2	290	Gct/Act																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306508	41306508	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	11	311	0	ENST00000373198.4:c.1151C>T	p.Ala384Val	p.A384V	ENST00000373198	NM_133170.3	384	gCa/gTa																																																																															
CUL3	8452	MSKCC	GRCh37	2	225368540	225368540	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	15	299	0	ENST00000264414.4:c.1207-1G>T		p.X403_splice	ENST00000264414	NM_003590.4	403																																																																																
BRCA2	675	MSKCC	GRCh37	13	32929098	32929098	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	27	380	0	ENST00000380152.3:c.7108A>G	p.Lys2370Glu	p.K2370E	ENST00000380152		2370	Aaa/Gaa																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544234	86544234	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	12	460	0	ENST00000262426.4:c.59G>T	p.Gly20Val	p.G20V	ENST00000262426	NM_001451.2	20	gGg/gTg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39222277	39222277	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	25	354	0	ENST00000402219.2:c.3333C>G	p.Ser1111Arg	p.S1111R	ENST00000402219	NM_005633.3	1111	agC/agG																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518458	69518458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	16	333	0	ENST00000294312.3:c.187C>A	p.Arg63Ser	p.R63S	ENST00000294312	NM_005117.2	63	Cgt/Agt																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47606978	47606978	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	15	361	0	ENST00000263735.4:c.728A>T	p.Asp243Val	p.D243V	ENST00000263735	NM_002354.2	243	gAt/gTt																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158656	26158656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	11	66	0	ENST00000289316.2:c.259C>G	p.Arg87Gly	p.R87G	ENST00000289316	NM_138720.2	87	Cgc/Ggc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87482302	87482302	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	23	426	0	ENST00000277120.3:c.1589C>A	p.Pro530His	p.P530H	ENST00000277120		530	cCc/cAc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867434	35867434	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0082638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	23	322	0	ENST00000303115.3:c.248T>A	p.Leu83Gln	p.L83Q	ENST00000303115	NM_002185.3	83	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0082654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	133	307	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
ALK	238	MSKCC	GRCh37	2	29917776	29917776	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	99	397	0	ENST00000389048.3:c.892G>T	p.Ala298Ser	p.A298S	ENST00000389048	NM_004304.4	298	Gcc/Tcc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149441355	149441355	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	362	430	0	ENST00000286301.3:c.1684A>G	p.Thr562Ala	p.T562A	ENST00000286301	NM_005211.3	562	Act/Gct																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729700	41729700	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	63	475	0	ENST00000242208.4:c.829G>C	p.Gly277Arg	p.G277R	ENST00000242208	NM_002192.2	277	Ggt/Cgt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41234436	41234436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	135	359	0	ENST00000357654.3:c.4342A>G	p.Ser1448Gly	p.S1448G	ENST00000357654	NM_007294.3	1448	Agc/Ggc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426075	49426075	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1281537769		P-0082654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	65	434	0	ENST00000301067.7:c.12413C>T	p.Ser4138Phe	p.S4138F	ENST00000301067	NM_003482.3	4138	tCt/tTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098691	47098691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	254	479	0	ENST00000409792.3:c.6583G>A	p.Asp2195Asn	p.D2195N	ENST00000409792	NM_014159.6	2195	Gac/Aac																																																																															
STK11	6794	MSKCC	GRCh37	19	1220675	1220675	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	99	410	0	ENST00000326873.7:c.693C>G	p.Phe231Leu	p.F231L	ENST00000326873	NM_000455.4	231	ttC/ttG																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884861	134884900	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCGGCCGGGGTCGTGTTCGTTGTGTCCTTGGTGGCCAT	CAGCGGCCGGGGTCGTGTTCGTTGTGTCCTTGGTGGCCAT	-			P-0082654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	206	372	0	ENST00000398015.3:c.1638_1677del	p.Ala547LeufsTer32	p.A547Lfs*32	ENST00000398015	NM_004441.4	546	gCAGCGGCCGGGGTCGTGTTCGTTGTGTCCTTGGTGGCCATc/gc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749470	41749470	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0082654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	235	303	0	ENST00000226382.2:c.325C>T	p.Gln109Ter	p.Q109*	ENST00000226382	NM_003924.3	109	Cag/Tag																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372172	55372172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	38	468	0	ENST00000297316.4:c.862G>T	p.Ala288Ser	p.A288S	ENST00000297316	NM_022454.3	288	Gcg/Tcg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147488	47147488	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0082654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	339	683	0	ENST00000409792.3:c.4838A>C	p.Glu1613Ala	p.E1613A	ENST00000409792	NM_014159.6	1613	gAg/gCg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482751	67482751	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0082654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	25	388	0	ENST00000327367.4:c.1155G>C	p.Arg385Ser	p.R385S	ENST00000327367	NM_005902.3	385	agG/agC																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477077	67477077	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772730200		P-0082654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	51	385	0	ENST00000327367.4:c.884G>A	p.Arg295Gln	p.R295Q	ENST00000327367	NM_005902.3	295	cGg/cAg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307496	118307496	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	28	309	0	ENST00000534358.1:c.269C>G	p.Ser90Trp	p.S90W	ENST00000534358	NM_005933.3	90	tCg/tGg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2977545	2977550	+	inframe_deletion	In_Frame_Del	DEL	TCCCGC	TCCCGC	-			P-0082654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	17	251	0	ENST00000396946.4:c.1134_1139del	p.Glu378_Arg379del	p.E378_R379del	ENST00000396946	NM_032415.4	378	gaGCGGGAc/gac																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115862	8115882	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGCCACATCTCGCCCTTCA	TGAGCCACATCTCGCCCTTCA	AAGG			P-0082656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	146	565	2	ENST00000346208.3:c.1208_1228delinsAAGG	p.Leu403GlnfsTer98	p.L403Qfs*98	ENST00000346208		403	cTGAGCCACATCTCGCCCTTCAgc/cAAGGgc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45872380	45872380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	108	397	0	ENST00000391945.4:c.131C>T	p.Ser44Leu	p.S44L	ENST00000391945	NM_000400.3	44	tCa/tTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874952	151874952	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0082656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	257	392	0	ENST00000262189.6:c.7586C>A	p.Ser2529Ter	p.S2529*	ENST00000262189	NM_170606.2	2529	tCa/tAa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265269	152265342	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAAAATAAACTAATTTTTTTTTCCACCTGTGTTTTCAGGGATACGAAAAGACCGAAGAGGAGGGAGAATGTTG	AAAAAATAAACTAATTTTTTTTTCCACCTGTGTTTTCAGGGATACGAAAAGACCGAAGAGGAGGGAGAATGTTG	-			P-0082656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	49	171	0	ENST00000206249.3:c.761-36_798del		p.X254_splice	ENST00000206249	NM_000125.3	254																																																																																
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0082658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	69	400	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
JAK3	3718	MSKCC	GRCh37	19	17949084	17949084	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	111	395	0	ENST00000458235.1:c.1557C>G	p.Asp519Glu	p.D519E	ENST00000458235	NM_000215.3	519	gaC/gaG																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044877	47044877	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0082658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			38	120	588	0	ENST00000329236.7:c.1969G>T	p.Glu657Ter	p.E657*	ENST00000329236	NM_001204466.1	657	Gag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165333	47165333	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0082658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	157	466	0	ENST00000409792.3:c.793G>T	p.Glu265Ter	p.E265*	ENST00000409792	NM_014159.6	265	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0082658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	154	296	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120484228	120484228	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	132	485	0	ENST00000256646.2:c.2902G>C	p.Val968Leu	p.V968L	ENST00000256646	NM_024408.3	968	Gtc/Ctc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374953	118374953	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			38	232	437	0	ENST00000534358.1:c.8346G>T	p.Lys2782Asn	p.K2782N	ENST00000534358	NM_005933.3	2782	aaG/aaT																																																																															
STAG2	10735	MSKCC	GRCh37	X	123229280	123229280	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	25	346	0	ENST00000218089.9:c.3764C>A	p.Ala1255Asp	p.A1255D	ENST00000218089	NM_001042749.1	1255	gCt/gAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47058679	47058680	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0082658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	134	445	0	ENST00000409792.3:c.7598_7599del	p.Asn2533ArgfsTer12	p.N2533Rfs*12	ENST00000409792	NM_014159.6	2533	aAT/a																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690028	33690028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	82	390	0	ENST00000308377.4:c.799C>T	p.Pro267Ser	p.P267S	ENST00000308377	NM_152270.3	267	Cct/Tct																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932990	39932990	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	31	531	0	ENST00000378444.4:c.1609C>A	p.Pro537Thr	p.P537T	ENST00000378444	NM_001123385.1	537	Cca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0082660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	11	253	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0081444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	73	431	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943789	71943789	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs773085707		P-0081444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	68	407	0	ENST00000298229.2:c.1832G>T	p.Arg611Leu	p.R611L	ENST00000298229	NM_001567.3	611	cGc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0082334-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			182	68	239	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0082334-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			330	11	308	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112102895	112102898	+	frameshift_variant	Frame_Shift_Del	DEL	TAGA	TAGA	-			P-0082334-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			214	90	228	0	ENST00000257430.4:c.233_236del	p.Asp78AlafsTer7	p.D78Afs*7	ENST00000257430	NM_000038.5	77	tTAGAt/tt																																																																															
APC	324	MSKCC	GRCh37	5	112173497	112173497	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0082334-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			280	118	370	0	ENST00000257430.4:c.2206A>T	p.Lys736Ter	p.K736*	ENST00000257430	NM_000038.5	736	Aag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175903	112175903	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0082334-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			342	154	395	0	ENST00000257430.4:c.4612G>T	p.Glu1538Ter	p.E1538*	ENST00000257430	NM_000038.5	1538	Gaa/Taa																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166005	118166005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082334-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			384	183	442	0	ENST00000369448.3:c.515C>T	p.Ser172Phe	p.S172F	ENST00000369448	NM_017709.3	172	tCc/tTc																																																																															
ATR	545	MSKCC	GRCh37	3	142254970	142254970	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377689383		P-0082334-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			199	101	215	0	ENST00000350721.4:c.3799G>A	p.Val1267Ile	p.V1267I	ENST00000350721	NM_001184.3	1267	Gtt/Att																																																																															
STK11	6794	MSKCC	GRCh37	19	1220644	1220644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1167609100		P-0082405-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			241	49	338	0	ENST00000326873.7:c.662C>T	p.Pro221Leu	p.P221L	ENST00000326873	NM_000455.4	221	cCg/cTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610162	10610162	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082405-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			282	80	356	0	ENST00000171111.5:c.548A>G	p.Asn183Ser	p.N183S	ENST00000171111	NM_203500.1	183	aAt/aGt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044559	47044559	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0082405-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			207	64	215	0	ENST00000329236.7:c.1822G>T	p.Glu608Ter	p.E608*	ENST00000329236	NM_001204466.1	608	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0082405-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			300	43	237	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TET2	54790	MSKCC	GRCh37	4	106157461	106157461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082405-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	45	392	0	ENST00000380013.4:c.2362G>A	p.Glu788Lys	p.E788K	ENST00000380013	NM_001127208.2	788	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27102176	27102177	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATGA			P-0082405-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	34	357	0	ENST00000324856.7:c.5104_5108dup	p.Phe1704Ter	p.F1704*	ENST00000324856	NM_006015.4	1701	atc/atCATGAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0082637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			729	119	625	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs121913370		P-0082637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	85	372	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974724	21974724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	60	514	0	ENST00000304494.5:c.103G>T	p.Gly35Trp	p.G35W	ENST00000304494	NM_000077.4	35	Ggg/Tgg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645690	12645690	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs869025501		P-0082637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	44	521	0	ENST00000251849.4:c.779C>T	p.Thr260Ile	p.T260I	ENST00000251849	NM_002880.3	260	aCa/aTa																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793257	242793257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	60	472	0	ENST00000334409.5:c.820G>T	p.Ala274Ser	p.A274S	ENST00000334409	NM_005018.2	274	Gcc/Tcc																																																																															
POLE	5426	MSKCC	GRCh37	12	133248861	133248871	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGGTCTTCT	CAAGGTCTTCT	-			P-0082637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	61	488	0	ENST00000320574.5:c.1724_1734del	p.Glu575AlafsTer5	p.E575Afs*5	ENST00000320574	NM_006231.2	575	gAGAAGACCTTG/g																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134898755	134898755	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs546798910		P-0061462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	115	520	0	ENST00000398015.3:c.1813G>A	p.Glu605Lys	p.E605K	ENST00000398015	NM_004441.4	605	Gaa/Aaa																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30322719	30322719	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	92	415	0	ENST00000322652.5:c.1732G>T	p.Glu578Ter	p.E578*	ENST00000322652	NM_015355.2	578	Gaa/Taa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610499	10610499	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs541663797		P-0061462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	140	463	0	ENST00000171111.5:c.211C>T	p.Arg71Trp	p.R71W	ENST00000171111	NM_203500.1	71	Cgg/Tgg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861964	57861964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	300	524	0	ENST00000228682.2:c.1265C>T	p.Pro422Leu	p.P422L	ENST00000228682	NM_005269.2	422	cCc/cTc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2202697	2202697	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0061462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	102	472	0	ENST00000398665.3:c.708-2A>T		p.X236_splice	ENST00000398665	NM_032482.2	236																																																																																
MAPK3	5595	MSKCC	GRCh37	16	30134484	30134484	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	113	330	0	ENST00000263025.4:c.47G>C	p.Arg16Thr	p.R16T	ENST00000263025	NM_002746.2	16	aGa/aCa																																																																															
NF1	4763	MSKCC	GRCh37	17	29483100	29483100	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1060500330		P-0061462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	79	364	0	ENST00000358273.4:c.160G>T	p.Val54Phe	p.V54F	ENST00000358273	NM_001042492.2	54	Gtt/Ttt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11095002	11095002	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1315494799		P-0061462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	125	548	0	ENST00000344626.4:c.175C>T	p.Gln59Ter	p.Q59*	ENST00000344626	NM_003072.3	59	Cag/Tag																																																																															
AXL	558	MSKCC	GRCh37	19	41759516	41759516	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	119	504	0	ENST00000301178.4:c.1939C>G	p.Gln647Glu	p.Q647E	ENST00000301178	NM_021913.4	647	Cag/Gag																																																																															
CASP8	841	MSKCC	GRCh37	2	202149787	202149792	+	inframe_deletion	In_Frame_Del	DEL	AAACCC	AAACCC	-			P-0061462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	128	595	0	ENST00000358485.4:c.1231_1236del	p.Pro411_Lys412del	p.P411_K412del	ENST00000358485	NM_001080125.1	410	AAACCC/-																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44514820	44514820	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	158	573	0	ENST00000291552.4:c.427G>T	p.Glu143Ter	p.E143*	ENST00000291552	NM_006758.2	143	Gag/Tag																																																																															
SDHA	6389	MSKCC	GRCh37	5	236600	236600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	31	152	0	ENST00000264932.6:c.1318G>A	p.Glu440Lys	p.E440K	ENST00000264932	NM_004168.2	440	Gag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859846	151859846	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0061462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	130	563	0	ENST00000262189.6:c.10816del	p.Arg3606GlufsTer24	p.R3606Efs*24	ENST00000262189	NM_170606.2	3606	Aga/ga																																																																															
STAG2	10735	MSKCC	GRCh37	X	123184087	123184087	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	100	438	0	ENST00000218089.9:c.945G>C	p.Trp315Cys	p.W315C	ENST00000218089	NM_001042749.1	315	tgG/tgC																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0061622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	113	370	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	52	462	1	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112173947	112173947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	55	499	0	ENST00000257430.4:c.2656C>T	p.Gln886Ter	p.Q886*	ENST00000257430	NM_000038.5	886	Cag/Tag																																																																															
TET1	80312	MSKCC	GRCh37	10	70450876	70450876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757931991		P-0061622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	47	502	0	ENST00000373644.4:c.5716G>A	p.Glu1906Lys	p.E1906K	ENST00000373644	NM_030625.2	1906	Gaa/Aaa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149436861	149436861	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs281860271		P-0061622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	18	450	0	ENST00000286301.3:c.2308G>A	p.Ala770Thr	p.A770T	ENST00000286301	NM_005211.3	770	Gct/Act																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119769	70119794	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCTTGCCAGAGGGGGGCAGACAGC	CCCCTTGCCAGAGGGGGGCAGACAGC	-			P-0061622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	87	425	0	ENST00000245479.2:c.776_801del	p.Leu259TyrfsTer28	p.L259Yfs*28	ENST00000245479	NM_000346.3	257	cgCCCCTTGCCAGAGGGGGGCAGACAGCcc/cgcc																																																																															
BTK	695	MSKCC	GRCh37	X	100611167	100611167	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	42	456	0	ENST00000308731.7:c.1439G>T	p.Gly480Val	p.G480V	ENST00000308731	NM_000061.2	480	gGc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0061934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	8	439	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157488190	157488190	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34786733		P-0061934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	8	445	0	ENST00000346085.5:c.2896G>A	p.Gly966Ser	p.G966S	ENST00000346085	NM_020732.3	966	Ggc/Agc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696742	47696742	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	25	318	1	ENST00000347630.2:c.206T>C	p.Leu69Ser	p.L69S	ENST00000347630	NM_001007230.1	69	tTg/tCg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65304160	65304160	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	26	323	0	ENST00000342505.4:c.2955del	p.Gln986ArgfsTer32	p.Q986Rfs*32	ENST00000342505	NM_002227.2	985	gtT/gt																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719427	190719427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	13	467	0	ENST00000441310.2:c.1429G>A	p.Glu477Lys	p.E477K	ENST00000441310	NM_000534.4	477	Gag/Aag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743837	40743837	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0061935-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	127	256	0	ENST00000373198.4:c.3156+2T>C		p.X1052_splice	ENST00000373198	NM_133170.3	1052																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0061977-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	177	583	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0061977-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	118	403	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0061977-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	89	517	0	ENST00000257430.4:c.4128T>A	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taA																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371942	55371942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061977-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			718	62	692	0	ENST00000297316.4:c.632C>T	p.Ala211Val	p.A211V	ENST00000297316	NM_022454.3	211	gCg/gTg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12037475	12037475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs724159946		P-0061977-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			792	150	526	0	ENST00000396373.4:c.1106G>A	p.Arg369Gln	p.R369Q	ENST00000396373	NM_001987.4	369	cGg/cAg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563267	21563267	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1365471980		P-0061977-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			986	71	745	0	ENST00000382592.4:c.652G>A	p.Gly218Arg	p.G218R	ENST00000382592	NM_014572.2	218	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934573		P-0062280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	205	429	1	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0062280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	282	543	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112137036	112137036	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			25	245	343	1	ENST00000257430.4:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000257430	NM_000038.5	264	Caa/Taa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39278407	39278407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	122	288	1	ENST00000402219.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000402219	NM_005633.3	248	Cgc/Tgc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306956	65306956	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	230	493	0	ENST00000342505.4:c.2621T>G	p.Phe874Cys	p.F874C	ENST00000342505	NM_002227.2	874	tTc/tGc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041144	29041144	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1057	106	434	0	ENST00000282397.4:c.284A>G	p.Asn95Ser	p.N95S	ENST00000282397	NM_002019.4	95	aAc/aGc																																																																															
POT1	25913	MSKCC	GRCh37	7	124469379	124469379	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	57	279	0	ENST00000357628.3:c.1523G>C	p.Ser508Thr	p.S508T	ENST00000357628	NM_015450.2	508	aGt/aCt																																																																															
AR	367	MSKCC	GRCh37	X	66863108	66863108	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1402718521		P-0062280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	180	226	0	ENST00000374690.3:c.1627G>T	p.Ala543Ser	p.A543S	ENST00000374690	NM_000044.3	543	Gcc/Tcc																																																																															
RET	5979	MSKCC	GRCh37	10	43615014	43615014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	143	656	0	ENST00000355710.3:c.2428G>T	p.Gly810Cys	p.G810C	ENST00000355710	NM_020975.4	810	Ggc/Tgc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94211949	94211949	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs587782758		P-0062318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	137	402	0	ENST00000323929.3:c.496C>G	p.Pro166Ala	p.P166A	ENST00000323929	NM_005591.3	166	Ccg/Gcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0062318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	200	701	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5219475	5219475	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	143	543	0	ENST00000357368.4:c.3769T>G	p.Phe1257Val	p.F1257V	ENST00000357368	NM_002850.3	1257	Ttt/Gtt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11106922	11106931	+	frameshift_variant	Frame_Shift_Del	DEL	GACCAGAAGA	GACCAGAAGA	-			P-0062318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	169	612	0	ENST00000344626.4:c.1627_1636del	p.Asp543ArgfsTer67	p.D543Rfs*67	ENST00000344626	NM_003072.3	543	GACCAGAAGAag/ag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663346	227663346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1024227751		P-0062318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	126	604	0	ENST00000305123.5:c.109G>A	p.Glu37Lys	p.E37K	ENST00000305123	NM_005544.2	37	Gag/Aag																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62292751	62292751	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	G			P-0062318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	153	627	0	ENST00000482936.1:c.203C>G	p.Ser68Cys	p.S68C	ENST00000482936		68	tCt/tGt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30733020	30733020	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	169	623	1	ENST00000359013.4:c.1708G>C	p.Asp570His	p.D570H	ENST00000359013	NM_001024847.2	570	Gac/Cac																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670792	134670792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	151	614	0	ENST00000398015.3:c.703C>T	p.Pro235Ser	p.P235S	ENST00000398015	NM_004441.4	235	Ccc/Tcc																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84390273	84390273	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs141624154		P-0062318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	70	339	0	ENST00000321945.7:c.508A>C	p.Asn170His	p.N170H	ENST00000321945	NM_139076.2	170	Aat/Cat																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602688	10602688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062348-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	99	718	0	ENST00000171111.5:c.890G>T	p.Cys297Phe	p.C297F	ENST00000171111	NM_203500.1	297	tGc/tTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29486044	29486044	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062348-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	55	371	0	ENST00000358273.4:c.221del	p.Ala74ValfsTer11	p.A74Vfs*11	ENST00000358273	NM_001042492.2	74	gCt/gt																																																																															
NF1	4763	MSKCC	GRCh37	17	29490345	29490346	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0062348-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	89	591	0	ENST00000358273.4:c.434_435del	p.Leu145GlnfsTer10	p.L145Qfs*10	ENST00000358273	NM_001042492.2	144	TCt/t																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61323022	61323022	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062348-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	97	758	0	ENST00000283752.5:c.1042G>T	p.Ala348Ser	p.A348S	ENST00000283752	NM_006919.2	348	Gct/Tct																																																																															
STK11	6794	MSKCC	GRCh37	19	1219367	1219368	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0062348-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	94	698	3	ENST00000326873.7:c.419_420delinsCT	p.Leu140Pro	p.L140P	ENST00000326873	NM_000455.4	140	cTG/cCT																																																																															
INSR	3643	MSKCC	GRCh37	19	7267568	7267568	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062348-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	109	662	0	ENST00000302850.5:c.440A>G	p.Glu147Gly	p.E147G	ENST00000302850	NM_000208.2	147	gAg/gGg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275768	38275830	+	protein_altering_variant	In_Frame_Del	DEL	GAGGGTCTTCGGGAAGCTCATACTCAGAGACCCCTGCTAGCATGGGAGTCCCACTGGAGGAGA	GAGGGTCTTCGGGAAGCTCATACTCAGAGACCCCTGCTAGCATGGGAGTCCCACTGGAGGAGA	AGGAGG			P-0062348-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	75	747	1	ENST00000425967.3:c.1439_1501delinsCCTCCT	p.Leu480_Arg501delinsProSerCys	p.L480_R501delinsPSC	ENST00000425967	NM_001174067.1	480	cTCTCCTCCAGTGGGACTCCCATGCTAGCAGGGGTCTCTGAGTATGAGCTTCCCGAAGACCCTCgc/cCCTCCTgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0062729-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1026	216	559	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30194865	30194865	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062729-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			626	33	401	0	ENST00000331968.5:c.280T>G	p.Phe94Val	p.F94V	ENST00000331968	NM_002742.2	94	Ttc/Gtc																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919631	96919631	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062729-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1017	99	598	0	ENST00000258439.3:c.632T>G	p.Leu211Arg	p.L211R	ENST00000258439	NM_001193304.2	211	cTc/cGc																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0062868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	109	613	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0062868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	248	1041	1	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
RET	5979	MSKCC	GRCh37	10	43622081	43622081	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0062868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			755	57	826	0	ENST00000355710.3:c.3098T>A	p.Leu1033His	p.L1033H	ENST00000355710	NM_020975.4	1033	cTc/cAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120883	115120887	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGA	GAAGA	-			P-0062868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	130	942	0	ENST00000257566.3:c.119_123del	p.Phe40SerfsTer69	p.F40Sfs*69	ENST00000257566	NM_016569.3	40	tTCTTC/t																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913153	32913153	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876661225		P-0062868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	146	654	0	ENST00000380152.3:c.4661G>C	p.Ser1554Thr	p.S1554T	ENST00000380152		1554	aGt/aCt																																																																															
MGA	23269	MSKCC	GRCh37	15	41961985	41961985	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	65	781	0	ENST00000219905.7:c.893A>G	p.Gln298Arg	p.Q298R	ENST00000219905	NM_001164273.1	298	cAg/cGg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940880	49940880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			876	104	1055	0	ENST00000296474.3:c.163G>A	p.Val55Ile	p.V55I	ENST00000296474	NM_002447.2	55	Gta/Ata																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680727	30680727	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			764	104	896	0	ENST00000376406.3:c.992C>G	p.Thr331Ser	p.T331S	ENST00000376406	NM_014641.2	331	aCt/aGt																																																																															
PARK2	5071	MSKCC	GRCh37	6	161990395	161990395	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1168877682		P-0062868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	44	615	0	ENST00000366898.1:c.925G>T	p.Glu309Ter	p.E309*	ENST00000366898	NM_004562.2	309	Gaa/Taa																																																																															
AGO2	27161	MSKCC	GRCh37	8	141595340	141595340	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			968	66	902	0	ENST00000220592.5:c.93T>A	p.Phe31Leu	p.F31L	ENST00000220592	NM_012154.3	31	ttT/ttA																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402536	139402536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	80	944	0	ENST00000277541.6:c.3381C>A	p.Asn1127Lys	p.N1127K	ENST00000277541	NM_017617.3	1127	aaC/aaA																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355276	15355276	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	25	512	0	ENST00000263377.2:c.2347C>A	p.Pro783Thr	p.P783T	ENST00000263377	NM_058243.2	783	Ccc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	34	599	0	ENST00000269305.4:c.398T>G	p.Met133Arg	p.M133R	ENST00000269305	NM_001126112.2	133	aTg/aGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	91	710	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517201		P-0062959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			35	21	329	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202365	138202365	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368859219		P-0062959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	18	706	0	ENST00000237289.4:c.2282G>A	p.Arg761His	p.R761H	ENST00000237289	NM_001270507.1	761	cGt/cAt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061209	38061210	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAGTAGCAGCCGTTCTCG			P-0062959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	15	626	0	ENST00000250448.2:c.762_779dup	p.Phe254_Tyr259dup	p.F254_Y259dup	ENST00000250448	NM_004496.3	254	ttg/ttCGAGAACGGCTGCTACTTg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199744	138199744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	41	849	0	ENST00000237289.4:c.1162G>A	p.Glu388Lys	p.E388K	ENST00000237289	NM_001270507.1	388	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	122	547	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665015	138665015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	59	532	0	ENST00000330315.3:c.550G>A	p.Asp184Asn	p.D184N	ENST00000330315	NM_023067.3	184	Gac/Aac																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157256700	157256700	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	30	460	0	ENST00000346085.5:c.2027C>G	p.Ser676Ter	p.S676*	ENST00000346085	NM_020732.3	676	tCa/tGa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445051	89445051	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	354	665	0	ENST00000336596.2:c.1371G>T	p.Trp457Cys	p.W457C	ENST00000336596	NM_005233.5	457	tgG/tgT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32164124	32164124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773802121		P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	356	704	0	ENST00000375023.3:c.5275G>A	p.Asp1759Asn	p.D1759N	ENST00000375023	NM_004557.3	1759	Gat/Aat																																																																															
AR	367	MSKCC	GRCh37	X	66765955	66765955	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1021234843		P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	42	423	0	ENST00000374690.3:c.967G>A	p.Glu323Lys	p.E323K	ENST00000374690	NM_000044.3	323	Gag/Aag																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513238	44513238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	80	404	1	ENST00000291552.4:c.697G>A	p.Asp233Asn	p.D233N	ENST00000291552	NM_006758.2	233	Gat/Aat																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112919968	112919968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	81	273	0	ENST00000351677.2:c.1183G>T	p.Asp395Tyr	p.D395Y	ENST00000351677	NM_002834.3	395	Gac/Tac																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32184818	32184818	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			789	53	718	0	ENST00000375023.3:c.1765G>C	p.Glu589Gln	p.E589Q	ENST00000375023	NM_004557.3	589	Gag/Cag																																																																															
SDHB	6390	MSKCC	GRCh37	1	17345397	17345397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	32	468	0	ENST00000375499.3:c.822G>T	p.Lys274Asn	p.K274N	ENST00000375499	NM_003000.2	274	aaG/aaT																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231487251	231487251	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	49	624	0	ENST00000295050.7:c.652T>G	p.Tyr218Asp	p.Y218D	ENST00000295050	NM_032018.5	218	Tac/Gac																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851740	63851740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	261	836	0	ENST00000279873.7:c.2518C>T	p.Leu840Phe	p.L840F	ENST00000279873	NM_032199.2	840	Ctc/Ttc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77066739	77066739	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	195	587	0	ENST00000356341.3:c.746C>A	p.Ser249Tyr	p.S249Y	ENST00000356341	NM_002576.4	249	tCt/tAt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243532	46243532	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	170	507	0	ENST00000334344.6:c.1885G>T	p.Asp629Tyr	p.D629Y	ENST00000334344	NM_152641.2	629	Gat/Tat																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562952	95562952	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	117	654	0	ENST00000343455.3:c.4305G>T	p.Glu1435Asp	p.E1435D	ENST00000343455	NM_177438.2	1435	gaG/gaT																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66777487	66777487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	47	762	0	ENST00000307102.5:c.853G>A	p.Glu285Lys	p.E285K	ENST00000307102	NM_002755.3	285	Gag/Aag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639432	3639433	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	316	872	0	ENST00000294008.3:c.4206_4207delinsTT	p.Gln1402_Glu1403delinsHisTer	p.Q1402_E1403delinsH*	ENST00000294008	NM_032444.2	1402	caGGag/caTTag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602726	10602726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	197	806	0	ENST00000171111.5:c.852G>T	p.Gln284His	p.Q284H	ENST00000171111	NM_203500.1	284	caG/caT																																																																															
CIC	23152	MSKCC	GRCh37	19	42796881	42796881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	305	976	0	ENST00000575354.2:c.3339G>T	p.Gln1113His	p.Q1113H	ENST00000575354	NM_015125.3	1113	caG/caT																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906838	50906838	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	65	548	0	ENST00000440232.2:c.1226G>T	p.Arg409Leu	p.R409L	ENST00000440232	NM_002691.3	409	cGg/cTg																																																																															
ALK	238	MSKCC	GRCh37	2	29917880	29917880	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	118	620	0	ENST00000389048.3:c.788G>T	p.Gly263Val	p.G263V	ENST00000389048	NM_004304.4	263	gGt/gTt																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919402	96919883	+	splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant	Splice_Site	DEL	GGCAGAGTCTCTCCTGGGGAAGGTTTGGAGAAGATGGTCAGGATCCTACCAGTGAGGCCTGCTGGGGAAAGGAGCTCCTCTGGGTGCGAGAGGAGCTGCAGAGTTGAGGGAGGGGCTGCCGAGGAAGAGAGCCCAGGGCTGGCATTAGGGTGTGTAAGCAGGGGGTGGCTGGAACTGGTTGATGACCTCATATTCCGCCGGGTAGGGCTCGTTCTCTTCCATCTCTGAGAGCAGCTCCAGCGCCTGCTCCTCTTCCTCTGTGGGGTAGTGGCGCAGGAGGTTGGCTGCCGTGGCCAGGATTGAGGCTCCACCAGCTCCTGCCACCAGGTAGAAGCTAACGGCGAAGGTGACATAGACCTGGGATCCATGGTACTTCTTATGCTGCTGCTGCTGGGCCAAGATGAGTTCAGAAGCCCAATAAGAAAAGCCAATGACGGTGGCACACTGCAGAACTAGGAGACAGAGGGACAGCACAGAAGGGG	GGCAGAGTCTCTCCTGGGGAAGGTTTGGAGAAGATGGTCAGGATCCTACCAGTGAGGCCTGCTGGGGAAAGGAGCTCCTCTGGGTGCGAGAGGAGCTGCAGAGTTGAGGGAGGGGCTGCCGAGGAAGAGAGCCCAGGGCTGGCATTAGGGTGTGTAAGCAGGGGGTGGCTGGAACTGGTTGATGACCTCATATTCCGCCGGGTAGGGCTCGTTCTCTTCCATCTCTGAGAGCAGCTCCAGCGCCTGCTCCTCTTCCTCTGTGGGGTAGTGGCGCAGGAGGTTGGCTGCCGTGGCCAGGATTGAGGCTCCACCAGCTCCTGCCACCAGGTAGAAGCTAACGGCGAAGGTGACATAGACCTGGGATCCATGGTACTTCTTATGCTGCTGCTGCTGGGCCAAGATGAGTTCAGAAGCCCAATAAGAAAAGCCAATGACGGTGGCACACTGCAGAACTAGGAGACAGAGGGACAGCACAGAAGGGG	-			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	46	218	0	ENST00000258439.3:c.410-30_*144del		p.X137_splice	ENST00000258439	NM_001193304.2	137																																																																																
PAK7	57144	MSKCC	GRCh37	20	9561313	9561313	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	68	700	0	ENST00000353224.5:c.469G>T	p.Asp157Tyr	p.D157Y	ENST00000353224	NM_177990.2	157	Gat/Tat																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100921	41100921	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	205	742	0	ENST00000373198.4:c.1435C>A	p.Gln479Lys	p.Q479K	ENST00000373198	NM_133170.3	479	Cag/Aag																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500850	149500850	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	226	622	0	ENST00000261799.4:c.2380G>C	p.Glu794Gln	p.E794Q	ENST00000261799	NM_002609.3	794	Gag/Cag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157256625	157256625	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	39	540	0	ENST00000346085.5:c.1952C>G	p.Thr651Ser	p.T651S	ENST00000346085	NM_020732.3	651	aCt/aGt																																																																															
HGF	3082	MSKCC	GRCh37	7	81340818	81340818	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	221	269	0	ENST00000222390.5:c.1423C>A	p.Pro475Thr	p.P475T	ENST00000222390	NM_000601.4	475	Cct/Act																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411605	63411605	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	195	430	0	ENST00000330258.3:c.1562G>C	p.Gly521Ala	p.G521A	ENST00000330258	NM_152424.3	521	gGa/gCa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411915	63411915	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372775016		P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	31	459	0	ENST00000330258.3:c.1252C>T	p.Arg418Trp	p.R418W	ENST00000330258	NM_152424.3	418	Cgg/Tgg																																																																															
ATRX	546	MSKCC	GRCh37	X	76953083	76953083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	11	182	0	ENST00000373344.5:c.230C>T	p.Ser77Leu	p.S77L	ENST00000373344	NM_000489.3	77	tCa/tTa																																																																															
BTK	695	MSKCC	GRCh37	X	100617161	100617161	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0063282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	179	299	0	ENST00000308731.7:c.588G>T	p.Gln196His	p.Q196H	ENST00000308731	NM_000061.2	196	caG/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0063640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	173	642	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99189364	99189364	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371978515		P-0063640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	188	646	0	ENST00000074304.5:c.2620G>A	p.Val874Ile	p.V874I	ENST00000074304	NM_001134224.1	874	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112175750	112175751	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTTTATT			P-0063640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	137	698	0	ENST00000257430.4:c.4460_4466dup	p.Leu1489PhefsTer27	p.L1489Ffs*27	ENST00000257430	NM_000038.5	1487	act/aCTTTATTct																																																																															
POT1	25913	MSKCC	GRCh37	7	124503463	124503463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	41	560	0	ENST00000357628.3:c.487G>T	p.Asp163Tyr	p.D163Y	ENST00000357628	NM_015450.2	163	Gac/Tac																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274745	123274745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	53	600	0	ENST00000358487.5:c.1173G>T	p.Met391Ile	p.M391I	ENST00000358487	NM_000141.4	391	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577111	7577112	+	missense_variant	Missense_Mutation	DNP	GC	GC	TA			P-0063653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	99	637	0	ENST00000269305.4:c.826_827delinsTA	p.Ala276Tyr	p.A276Y	ENST00000269305	NM_001126112.2	276	GCc/TAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29527560	29527560	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	36	445	0	ENST00000358273.4:c.1009G>T	p.Glu337Ter	p.E337*	ENST00000358273	NM_001042492.2	337	Gaa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29559158	29559158	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	28	247	0	ENST00000358273.4:c.3265G>T	p.Glu1089Ter	p.E1089*	ENST00000358273	NM_001042492.2	1089	Gaa/Taa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78617533	78617533	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	36	627	0	ENST00000306801.3:c.271C>G	p.Leu91Val	p.L91V	ENST00000306801	NM_020761.2	91	Ctg/Gtg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86648993	86648993	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	39	396	0	ENST00000274376.6:c.1273C>A	p.His425Asn	p.H425N	ENST00000274376	NM_002890.2	425	Cac/Aac																																																																															
ATRX	546	MSKCC	GRCh37	X	76776369	76776369	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	49	513	0	ENST00000373344.5:c.7097A>T	p.Glu2366Val	p.E2366V	ENST00000373344	NM_000489.3	2366	gAg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0063805-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	186	409	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602856	10602856	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063805-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	49	545	0	ENST00000171111.5:c.722G>T	p.Cys241Phe	p.C241F	ENST00000171111	NM_203500.1	241	tGc/tTc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200877	67200877	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063805-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	69	565	0	ENST00000312629.5:c.870del	p.Tyr291ThrfsTer14	p.Y291Tfs*14	ENST00000312629	NM_003952.2	289	Ccc/cc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212381	5212381	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372226485		P-0063805-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	101	567	0	ENST00000357368.4:c.4736C>T	p.Pro1579Leu	p.P1579L	ENST00000357368	NM_002850.3	1579	cCg/cTg																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073424	8073424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063805-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	49	444	0	ENST00000377482.5:c.1235G>A	p.Arg412Lys	p.R412K	ENST00000377482	NM_018948.3	412	aGg/aAg																																																																															
ID3	3399	MSKCC	GRCh37	1	23885650	23885650	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0063805-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	100	584	0	ENST00000374561.5:c.268G>T	p.Gly90Ter	p.G90*	ENST00000374561	NM_002167.4	90	Gga/Tga																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123246892	123246892	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063805-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	36	424	0	ENST00000358487.5:c.2033G>C	p.Arg678Thr	p.R678T	ENST00000358487	NM_000141.4	678	aGa/aCa																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589663	69589663	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063805-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	155	830	0	ENST00000168712.1:c.190C>G	p.Pro64Ala	p.P64A	ENST00000168712	NM_002007.2	64	Ccc/Gcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427509	49427510	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0063805-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	103	528	0	ENST00000301067.7:c.10978_10979delinsTT	p.Gly3660Leu	p.G3660L	ENST00000301067	NM_003482.3	3660	GGg/TTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435018	110435018	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1255377313		P-0063805-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	45	557	0	ENST00000375856.3:c.3383A>C	p.Asp1128Ala	p.D1128A	ENST00000375856	NM_003749.2	1128	gAc/gCc																																																																															
KDR	3791	MSKCC	GRCh37	4	55968651	55968651	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063805-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	144	381	0	ENST00000263923.4:c.2012G>T	p.Gly671Val	p.G671V	ENST00000263923	NM_002253.2	671	gGa/gTa																																																																															
KDR	3791	MSKCC	GRCh37	4	55968660	55968660	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063805-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	132	374	0	ENST00000263923.4:c.2003C>A	p.Thr668Lys	p.T668K	ENST00000263923	NM_002253.2	668	aCg/aAg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048572	180048572	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs774487220		P-0063805-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	82	573	0	ENST00000261937.6:c.1990C>A	p.His664Asn	p.H664N	ENST00000261937	NM_182925.4	664	Cac/Aac																																																																															
MDC1	9656	MSKCC	GRCh37	6	30668291	30668291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063805-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	46	392	1	ENST00000376406.3:c.6221C>T	p.Ala2074Val	p.A2074V	ENST00000376406	NM_014641.2	2074	gCc/gTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971102	21971102	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063805-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	148	445	0	ENST00000304494.5:c.256G>C	p.Ala86Pro	p.A86P	ENST00000304494	NM_000077.4	86	Gcc/Ccc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139780992	139780992	+	splice_region_variant,5_prime_UTR_variant	Splice_Region	DEL	G	G	-			P-0063805-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	26	148	0	ENST00000247668.2:c.-29+1del		p.X10_splice	ENST00000247668	NM_021138.3	10																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53245105	53245105	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063805-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	54	271	0	ENST00000375401.3:c.835G>T	p.Gly279Trp	p.G279W	ENST00000375401	NM_004187.3	279	Ggg/Tgg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410881	63410881	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063805-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	109	244	0	ENST00000330258.3:c.2286A>T	p.Glu762Asp	p.E762D	ENST00000330258	NM_152424.3	762	gaA/gaT																																																																															
PHF6	84295	MSKCC	GRCh37	X	133547973	133547973	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs794727878		P-0063805-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	33	154	0	ENST00000332070.3:c.706G>A	p.Ala236Thr	p.A236T	ENST00000332070	NM_032458.2	236	Gca/Aca																																																																															
PARK2	5071	MSKCC	GRCh37	6	161990431	161990433	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	AGG	AGG	TT			P-0063805-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	28	421	0	ENST00000366898.1:c.887_889delinsAA	p.Ser296Ter	p.S296*	ENST00000366898	NM_004562.2	296	tCCTtg/tAAtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0063996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			107	557	600	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	140	498	2	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139818373	139818373	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754210099		P-0063996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	334	417	3	ENST00000247668.2:c.1208G>A	p.Arg403Gln	p.R403Q	ENST00000247668	NM_021138.3	403	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112164559	112164560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0063996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	304	338	1	ENST00000257430.4:c.1634dup	p.Ser546GlufsTer14	p.S546Efs*14	ENST00000257430	NM_000038.5	545	gcg/gCcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0064171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	215	661	2	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0064171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	117	464	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0064171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	58	505	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FLT1	2321	MSKCC	GRCh37	13	28919596	28919596	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1244106213		P-0064171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	51	453	0	ENST00000282397.4:c.2341C>T	p.Arg781Ter	p.R781*	ENST00000282397	NM_002019.4	781	Cga/Tga																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775941	9775941	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0064171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	84	584	0	ENST00000377346.4:c.405A>C	p.Glu135Asp	p.E135D	ENST00000377346	NM_005026.3	135	gaA/gaC																																																																															
KLF5	688	MSKCC	GRCh37	13	73637974	73637974	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	46	409	0	ENST00000377687.4:c.1148T>A	p.Val383Asp	p.V383D	ENST00000377687	NM_001730.3	383	gTt/gAt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99185032	99185032	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0064171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	59	436	0	ENST00000074304.5:c.2436-2A>C		p.X812_splice	ENST00000074304	NM_001134224.1	812																																																																																
INPP4A	3631	MSKCC	GRCh37	2	99193503	99193503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	63	633	0	ENST00000074304.5:c.2698G>T	p.Asp900Tyr	p.D900Y	ENST00000074304	NM_001134224.1	900	Gac/Tac																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023028	31023028	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1331	79	680	0	ENST00000375687.4:c.2513A>T	p.Lys838Met	p.K838M	ENST00000375687	NM_015338.5	838	aAg/aTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161965	47161965	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0064171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	65	543	0	ENST00000409792.3:c.4161A>C	p.Lys1387Asn	p.K1387N	ENST00000409792	NM_014159.6	1387	aaA/aaC																																																																															
REST	5978	MSKCC	GRCh37	4	57797800	57797800	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0064171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	72	590	0	ENST00000309042.7:c.2776T>G	p.Leu926Val	p.L926V	ENST00000309042	NM_005612.4	926	Ttg/Gtg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515187	149515187	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	80	673	1	ENST00000261799.4:c.295T>C	p.Phe99Leu	p.F99L	ENST00000261799	NM_002609.3	99	Ttt/Ctt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371819	55371819	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	77	603	0	ENST00000297316.4:c.509A>G	p.Glu170Gly	p.E170G	ENST00000297316	NM_022454.3	170	gAg/gGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0064300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	191	691	0	ENST00000269305.4:c.673-2A>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
AXL	558	MSKCC	GRCh37	19	41748850	41748850	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138698106		P-0064300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	219	938	1	ENST00000301178.4:c.1375G>A	p.Val459Met	p.V459M	ENST00000301178	NM_021913.4	459	Gtg/Atg																																																																															
CIC	23152	MSKCC	GRCh37	19	42794439	42794439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370252719		P-0064300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	244	1074	2	ENST00000575354.2:c.1519C>T	p.Arg507Cys	p.R507C	ENST00000575354	NM_015125.3	507	Cgc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735466	40735466	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182388300		P-0064300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			731	165	866	5	ENST00000373198.4:c.3407G>A	p.Arg1136His	p.R1136H	ENST00000373198	NM_133170.3	1136	cGt/cAt																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21347150	21347150	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375451574		P-0064300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	261	941	5	ENST00000215739.8:c.1217C>T	p.Thr406Met	p.T406M	ENST00000215739	NM_006767.3	406	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175456	112175457	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0064300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	121	321	1	ENST00000257430.4:c.4166_4167del	p.Ser1389CysfsTer5	p.S1389Cfs*5	ENST00000257430	NM_000038.5	1389	TCt/t																																																																															
ABL1	25	MSKCC	GRCh37	9	133738165	133738165	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0064300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	142	599	2	ENST00000318560.5:c.565G>T	p.Glu189Ter	p.E189*	ENST00000318560	NM_005157.4	189	Gag/Tag																																																																															
ABL1	25	MSKCC	GRCh37	9	133760019	133760019	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753588128		P-0064300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	218	760	3	ENST00000318560.5:c.2342C>T	p.Thr781Met	p.T781M	ENST00000318560	NM_005157.4	781	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0064396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	174	517	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0064396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	204	697	3	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2133731	2133731	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62642481		P-0064396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	106	687	0	ENST00000219476.3:c.3919G>A	p.Glu1307Lys	p.E1307K	ENST00000219476	NM_000548.3	1307	Gag/Aag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423602	88423602	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767450627		P-0064396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	134	518	0	ENST00000360948.2:c.2233C>T	p.Arg745Trp	p.R745W	ENST00000360948	NM_001012338.2	745	Cgg/Tgg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99486217	99486217	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	78	604	0	ENST00000268035.6:c.3523C>G	p.Pro1175Ala	p.P1175A	ENST00000268035	NM_000875.3	1175	Ccc/Gcc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781812	3781812	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	66	619	0	ENST00000262367.5:c.4855C>T	p.Gln1619Ter	p.Q1619*	ENST00000262367	NM_004380.2	1619	Cag/Tag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11924223	11924223	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	85	749	0	ENST00000353533.5:c.20G>C	p.Ser7Thr	p.S7T	ENST00000353533	NM_003010.3	7	aGc/aCc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185198189	185198189	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	112	585	0	ENST00000265026.3:c.2671C>T	p.Gln891Ter	p.Q891*	ENST00000265026	NM_004721.4	891	Cag/Tag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152415702	152415702	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0064396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	159	548	0	ENST00000206249.3:c.1552A>G	p.Ser518Gly	p.S518G	ENST00000206249	NM_000125.3	518	Agt/Ggt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0064537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	221	681	0	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
NFE2L2	4780	MSKCC	GRCh37	2	178098803	178098803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	264	594	0	ENST00000397062.3:c.242G>T	p.Gly81Val	p.G81V	ENST00000397062	NM_006164.4	81	gGt/gTt																																																																															
MDM4	4194	MSKCC	GRCh37	1	204513697	204513711	+	inframe_deletion	In_Frame_Del	DEL	ATGACTTGTGGTTTT	ATGACTTGTGGTTTT	-			P-0064537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	179	493	0	ENST00000367182.3:c.707_721del	p.Asp236_Leu241delinsVal	p.D236_L241delinsV	ENST00000367182	NM_001278516.1	236	gATGACTTGTGGTTTTtg/gtg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098380	11098380	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	261	757	0	ENST00000344626.4:c.898C>T	p.Gln300Ter	p.Q300*	ENST00000344626	NM_003072.3	300	Cag/Tag																																																																															
BRD4	23476	MSKCC	GRCh37	19	15378350	15378350	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	254	519	0	ENST00000263377.2:c.436A>G	p.Ile146Val	p.I146V	ENST00000263377	NM_058243.2	146	Ata/Gta																																																																															
ROS1	6098	MSKCC	GRCh37	6	117708990	117708990	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	242	561	0	ENST00000368508.3:c.1967G>T	p.Arg656Met	p.R656M	ENST00000368508	NM_002944.2	656	aGg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874839	151874839	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1278081629		P-0064537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	281	664	0	ENST00000262189.6:c.7699G>A	p.Asp2567Asn	p.D2567N	ENST00000262189	NM_170606.2	2567	Gac/Aac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0064627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			69	21	175	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0064627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	269	664	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47061259	47061259	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	243	538	0	ENST00000409792.3:c.7422C>G	p.Phe2474Leu	p.F2474L	ENST00000409792	NM_014159.6	2474	ttC/ttG																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845748	151845751	+	frameshift_variant	Frame_Shift_Del	DEL	GGTT	GGTT	-			P-0064627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	272	652	0	ENST00000262189.6:c.13261_13264del	p.Asn4421LeufsTer9	p.N4421Lfs*9	ENST00000262189	NM_170606.2	4421	AACCtt/tt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65344736	65344736	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	237	543	0	ENST00000342505.4:c.301A>T	p.Met101Leu	p.M101L	ENST00000342505	NM_002227.2	101	Atg/Ttg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162722922	162722922	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			770	147	585	0	ENST00000367921.3:c.120G>T	p.Gln40His	p.Q40H	ENST00000367921	NM_006182.2	40	caG/caT																																																																															
ELF3	1999	MSKCC	GRCh37	1	201980415	201980416	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	183	621	0	ENST00000359651.3:c.152_153dup	p.Glu52TrpfsTer104	p.E52Wfs*104	ENST00000359651		51	ttg/tTGtg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243809238	243809238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	172	380	0	ENST00000263826.5:c.386G>T	p.Gly129Val	p.G129V	ENST00000263826	NM_005465.4	129	gGa/gTa																																																																															
RET	5979	MSKCC	GRCh37	10	43608311	43608311	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1095	70	970	0	ENST00000355710.3:c.1659G>C	p.Arg553Ser	p.R553S	ENST00000355710	NM_020975.4	553	agG/agC																																																																															
TET1	80312	MSKCC	GRCh37	10	70332790	70332790	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs545216411		P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	126	468	0	ENST00000373644.4:c.695C>T	p.Thr232Ile	p.T232I	ENST00000373644	NM_030625.2	232	aCa/aTa																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514068	69514068	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	150	618	0	ENST00000294312.3:c.613G>T	p.Gly205Ter	p.G205*	ENST00000294312	NM_005117.2	205	Gga/Tga																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936113	71936113	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	157	531	0	ENST00000298229.2:c.85G>C	p.Ala29Pro	p.A29P	ENST00000298229	NM_001567.3	29	Gcg/Ccg																																																																															
ATM	472	MSKCC	GRCh37	11	108119741	108119741	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs864622650		P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	89	272	0	ENST00000278616.4:c.1147C>T	p.Pro383Ser	p.P383S	ENST00000278616	NM_000051.3	383	Cct/Tct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440420	49440420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			737	211	684	0	ENST00000301067.7:c.4390G>T	p.Val1464Phe	p.V1464F	ENST00000301067	NM_003482.3	1464	Gtc/Ttc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444172	49444172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			723	226	769	0	ENST00000301067.7:c.3199G>A	p.Glu1067Lys	p.E1067K	ENST00000301067	NM_003482.3	1067	Gag/Aag																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856313	111856313	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747913408		P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	30	590	1	ENST00000341259.2:c.364G>A	p.Glu122Lys	p.E122K	ENST00000341259	NM_005475.2	122	Gag/Aag																																																																															
POLE	5426	MSKCC	GRCh37	12	133212510	133212510	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	99	487	0	ENST00000320574.5:c.5779G>T	p.Gly1927Ter	p.G1927*	ENST00000320574	NM_006231.2	1927	Gga/Tga																																																																															
FLT3	2322	MSKCC	GRCh37	13	28636140	28636140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	246	564	0	ENST00000241453.7:c.232G>T	p.Ala78Ser	p.A78S	ENST00000241453	NM_004119.2	78	Gct/Tct																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436045	110436045	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	374	741	0	ENST00000375856.3:c.2356G>C	p.Ala786Pro	p.A786P	ENST00000375856	NM_003749.2	786	Gca/Cca																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609750	81609750	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	262	730	0	ENST00000298171.2:c.1348C>A	p.Arg450Ser	p.R450S	ENST00000298171	NM_000369.2	450	Cgc/Agc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423546	88423546	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	184	517	0	ENST00000360948.2:c.2289C>G	p.Ile763Met	p.I763M	ENST00000360948	NM_001012338.2	763	atC/atG																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472538	88472538	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	193	604	0	ENST00000360948.2:c.2017C>A	p.Gln673Lys	p.Q673K	ENST00000360948	NM_001012338.2	673	Cag/Aag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	341227	341227	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1362608628		P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	95	472	0	ENST00000262320.3:c.2257G>T	p.Val753Leu	p.V753L	ENST00000262320	NM_003502.3	753	Gta/Tta																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639677	3639677	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs778781581		P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			861	134	864	0	ENST00000294008.3:c.3962C>G	p.Pro1321Arg	p.P1321R	ENST00000294008	NM_032444.2	1321	cCg/cGg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943772	9943772	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	108	632	0	ENST00000330684.3:c.1169G>T	p.Trp390Leu	p.W390L	ENST00000330684	NM_001134407.1	390	tGg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	222	680	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29552174	29552174	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs780412565		P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	88	427	0	ENST00000358273.4:c.1907C>G	p.Ser636Cys	p.S636C	ENST00000358273	NM_001042492.2	636	tCt/tGt																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690784	33690784	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774335910		P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	158	563	0	ENST00000308377.4:c.43C>T	p.Pro15Ser	p.P15S	ENST00000308377	NM_152270.3	15	Cca/Tca																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602504	10602504	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	228	732	0	ENST00000171111.5:c.1074del	p.Gln359ArgfsTer41	p.Q359Rfs*41	ENST00000171111	NM_203500.1	358	ctG/ct																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292495	15292495	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144732188		P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	250	734	0	ENST00000263388.2:c.2684C>T	p.Pro895Leu	p.P895L	ENST00000263388	NM_000435.2	895	cCc/cTc																																																																															
ALK	238	MSKCC	GRCh37	2	29448414	29448414	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			927	304	882	0	ENST00000389048.3:c.3085C>A	p.Pro1029Thr	p.P1029T	ENST00000389048	NM_004304.4	1029	Cca/Aca																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873267	136873267	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	218	670	0	ENST00000241393.3:c.231G>T	p.Arg77Ser	p.R77S	ENST00000241393	NM_003467.2	77	agG/agT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739075	40739075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	167	518	0	ENST00000373198.4:c.3209C>T	p.Pro1070Leu	p.P1070L	ENST00000373198	NM_133170.3	1070	cCt/cTt																																																																															
EP300	2033	MSKCC	GRCh37	22	41573999	41573999	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			739	40	697	0	ENST00000263253.7:c.6284C>G	p.Ser2095Cys	p.S2095C	ENST00000263253	NM_001429.3	2095	tCt/tGt																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169999684	169999684	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	78	199	0	ENST00000295797.4:c.995T>A	p.Ile332Lys	p.I332K	ENST00000295797	NM_002740.5	332	aTa/aAa																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170020899	170020899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	30	63	0	ENST00000295797.4:c.1775C>T	p.Ala592Val	p.A592V	ENST00000295797	NM_002740.5	592	gCa/gTa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1955231	1955231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	184	589	0	ENST00000382895.3:c.2318C>T	p.Ser773Leu	p.S773L	ENST00000382895	NM_133330.2	773	tCa/tTa																																																																															
KDR	3791	MSKCC	GRCh37	4	55955054	55955054	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	165	443	0	ENST00000263923.4:c.3491T>A	p.Leu1164Ter	p.L1164*	ENST00000263923	NM_002253.2	1164	tTg/tAg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	165	564	0				ENST00000310581	NM_198253.2																																																																																	
IL7R	3575	MSKCC	GRCh37	5	35875673	35875673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	201	367	0	ENST00000303115.3:c.860G>T	p.Cys287Phe	p.C287F	ENST00000303115	NM_002185.3	287	tGt/tTt																																																																															
IRF4	3662	MSKCC	GRCh37	6	401502	401502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	366	592	0	ENST00000380956.4:c.824G>T	p.Arg275Leu	p.R275L	ENST00000380956	NM_001195286.1	275	cGg/cTg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190423	32190423	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs140979766		P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	405	815	0	ENST00000375023.3:c.316C>A	p.Leu106Ile	p.L106I	ENST00000375023	NM_004557.3	106	Ctc/Atc																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64286793	64286793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	91	360	0	ENST00000370651.3:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000370651	NM_003463.4	3	cGa/cAa																																																																															
CDK6	1021	MSKCC	GRCh37	7	92462507	92462507	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	182	552	0	ENST00000265734.4:c.131G>T	p.Arg44Leu	p.R44L	ENST00000265734	NM_001259.6	44	cGc/cTc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68930139	68930139	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	65	458	0	ENST00000288368.4:c.200A>G	p.Glu67Gly	p.E67G	ENST00000288368	NM_024870.2	67	gAa/gGa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741824	145741824	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	459	692	0	ENST00000428558.2:c.679G>C	p.Val227Leu	p.V227L	ENST00000428558	NM_004260.3	227	Gtc/Ctc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971056	21971056	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	233	686	0	ENST00000304494.5:c.302G>T	p.Gly101Val	p.G101V	ENST00000304494	NM_000077.4	101	gGg/gTg																																																																															
TEK	7010	MSKCC	GRCh37	9	27206623	27206623	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	174	446	1	ENST00000380036.4:c.2408T>A	p.Leu803Gln	p.L803Q	ENST00000380036	NM_000459.3	803	cTa/cAa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922253	39922253	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs769942209		P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	179	513	0	ENST00000378444.4:c.3919G>T	p.Ala1307Ser	p.A1307S	ENST00000378444	NM_001123385.1	1307	Gct/Tct																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931691	39931691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	104	522	0	ENST00000378444.4:c.2908G>A	p.Ala970Thr	p.A970T	ENST00000378444	NM_001123385.1	970	Gcg/Acg																																																																															
BTK	695	MSKCC	GRCh37	X	100611108	100611108	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	203	589	0	ENST00000308731.7:c.1498G>T	p.Glu500Ter	p.E500*	ENST00000308731	NM_000061.2	500	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444307	49444307	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	AA			P-0064661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			785	262	788	0	ENST00000301067.7:c.3064delinsTT	p.Pro1022PhefsTer46	p.P1022Ffs*46	ENST00000301067	NM_003482.3	1022	Cct/TTct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0064785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	111	466	6	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175536	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0064785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	72	469	0	ENST00000257430.4:c.4245del	p.Ser1415ArgfsTer4	p.S1415Rfs*4	ENST00000257430	NM_000038.5	1415	agT/ag																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625251	69625251	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782147248		P-0064785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	122	552	2	ENST00000334134.2:c.542G>A	p.Arg181His	p.R181H	ENST00000334134	NM_005247.2	181	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993300	72993300	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745631900		P-0064785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	46	556	1	ENST00000268489.5:c.745G>A	p.Gly249Ser	p.G249S	ENST00000268489	NM_006885.3	249	Ggt/Agt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499651	8499651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	92	472	1	ENST00000356435.5:c.2318C>T	p.Ala773Val	p.A773V	ENST00000356435		773	gCa/gTa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103519132	103519132	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	142	398	1	ENST00000355739.4:c.2470A>G	p.Asn824Asp	p.N824D	ENST00000355739	NM_000123.3	824	Aac/Gac																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67358539	67358539	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0064785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	150	549	1	ENST00000327367.4:c.47del	p.Leu16ArgfsTer100	p.L16Rfs*100	ENST00000327367	NM_005902.3	16	cTg/cg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117543	70117543	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	91	570	2	ENST00000245479.2:c.11T>A	p.Leu4Gln	p.L4Q	ENST00000245479	NM_000346.3	4	cTg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112174035	112174035	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0064785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	68	548	0	ENST00000257430.4:c.2744del	p.Val915GlyfsTer40	p.V915Gfs*40	ENST00000257430	NM_000038.5	915	gTg/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0064885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	100	209	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49423200	49423200	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	212	497	0	ENST00000301067.7:c.14059C>G	p.Gln4687Glu	p.Q4687E	ENST00000301067	NM_003482.3	4687	Cag/Gag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0064974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	355	809	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
TP63	8626	MSKCC	GRCh37	3	189582193	189582193	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1198643405		P-0064974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	101	636	0	ENST00000264731.3:c.752G>A	p.Arg251His	p.R251H	ENST00000264731	NM_003722.4	251	cGt/cAt																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023364	33023364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	150	815	0	ENST00000300177.4:c.473G>T	p.Cys158Phe	p.C158F	ENST00000300177	NM_001191322.1	158	tGc/tTc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23614864	23614864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	138	590	0	ENST00000261584.4:c.3477G>T	p.Trp1159Cys	p.W1159C	ENST00000261584	NM_024675.3	1159	tgG/tgT																																																																															
CIC	23152	MSKCC	GRCh37	19	42791276	42791276	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	173	834	0	ENST00000575354.2:c.336C>G	p.His112Gln	p.H112Q	ENST00000575354	NM_015125.3	112	caC/caG																																																																															
AXL	558	MSKCC	GRCh37	19	41762464	41762464	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0065010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	167	539	0	ENST00000301178.4:c.2144G>A	p.Trp715Ter	p.W715*	ENST00000301178	NM_021913.4	715	tGg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112173835	112173838	+	frameshift_variant	Frame_Shift_Del	DEL	AGAT	AGAT	-			P-0065010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	111	463	0	ENST00000257430.4:c.2547_2550del	p.Asp849GlufsTer11	p.D849Efs*11	ENST00000257430	NM_000038.5	848	aaAGAT/aa																																																																															
GAB2	9846	MSKCC	GRCh37	11	77937766	77937775	+	frameshift_variant	Frame_Shift_Del	DEL	CCGGAACATC	CCGGAACATC	-			P-0065010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	142	550	0	ENST00000361507.4:c.943_952del	p.Asp315ProfsTer22	p.D315Pfs*22	ENST00000361507	NM_080491.2	315	GATGTTCCGGcc/cc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120843	115120843	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	154	621	0	ENST00000257566.3:c.163T>G	p.Ser55Ala	p.S55A	ENST00000257566	NM_016569.3	55	Tcg/Gcg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14014063	14014063	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754622238		P-0065010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	160	464	0	ENST00000311895.7:c.41C>T	p.Pro14Leu	p.P14L	ENST00000311895	NM_005236.2	14	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578521	7578522	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTGGCAAAAAAAA			P-0065010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	295	619	0	ENST00000269305.4:c.408_409insTTTTTTTTGCCAA	p.Leu137PhefsTer16	p.L137Ffs*16	ENST00000269305	NM_001126112.2	136	-/TTTTTTTTGCCAA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573604	48573604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	91	473	0	ENST00000342988.3:c.188C>T	p.Thr63Ile	p.T63I	ENST00000342988	NM_005359.5	63	aCa/aTa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162275	38162275	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0065010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	100	360	0	ENST00000317025.8:c.2441G>A	p.Gly814Asp	p.G814D	ENST00000317025	NM_023034.1	814	gGc/gAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32903612	32903612	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397507873		P-0065035-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	23	235	0	ENST00000380152.3:c.664C>T	p.Pro222Ser	p.P222S	ENST00000380152		222	Cct/Tct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097665	27097665	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0065035-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			536	89	502	0	ENST00000324856.7:c.3254C>G	p.Ser1085Ter	p.S1085*	ENST00000324856	NM_006015.4	1085	tCa/tGa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984368	201984368	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065035-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			517	103	446	0	ENST00000359651.3:c.1033G>C	p.Val345Leu	p.V345L	ENST00000359651		345	Gtg/Ctg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041376	47041376	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0065035-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			614	90	569	0	ENST00000329236.7:c.1486T>G	p.Tyr496Asp	p.Y496D	ENST00000329236	NM_001204466.1	496	Tac/Gac																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30194826	30194826	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	58	476	0	ENST00000331968.5:c.319G>T	p.Asp107Tyr	p.D107Y	ENST00000331968	NM_002742.2	107	Gac/Tac																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245832	46245832	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0065147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	66	511	0	ENST00000334344.6:c.3926C>G	p.Ser1309Ter	p.S1309*	ENST00000334344	NM_152641.2	1309	tCa/tGa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231349	46231349	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	79	410	0	ENST00000334344.6:c.1189C>T	p.Gln397Ter	p.Q397*	ENST00000334344	NM_152641.2	397	Cag/Tag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390779	139390779	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771318379		P-0065147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	187	611	0	ENST00000277541.6:c.7412C>T	p.Ser2471Leu	p.S2471L	ENST00000277541	NM_017617.3	2471	tCg/tTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039278	47039278	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0065147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	65	529	0	ENST00000329236.7:c.671-1G>A		p.X224_splice	ENST00000329236	NM_001204466.1	224																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49415843	49415843	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	64	523	0	ENST00000301067.7:c.16504A>G	p.Ile5502Val	p.I5502V	ENST00000301067	NM_003482.3	5502	Atc/Gtc																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68352596	68352596	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	44	430	0	ENST00000487270.1:c.463A>T	p.Ile155Leu	p.I155L	ENST00000487270	NM_133509.3	155	Ata/Tta																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51503086	51503086	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	75	454	0	ENST00000260433.2:c.1431G>T	p.Leu477Phe	p.L477F	ENST00000260433		477	ttG/ttT																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396605	396606	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0065147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	69	536	1	ENST00000262320.3:c.420_421delinsTT	p.Ala141Ser	p.A141S	ENST00000262320	NM_003502.3	140	ctGGcg/ctTTcg																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61306924	61306924	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	74	484	0	ENST00000341074.5:c.556T>A	p.Trp186Arg	p.W186R	ENST00000341074	NM_002974.2	186	Tgg/Agg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220378	1220378	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	230	531	0	ENST00000326873.7:c.471del	p.Cys158ValfsTer3	p.C158Vfs*3	ENST00000326873	NM_000455.4	157	ttC/tt																																																																															
UPF1	5976	MSKCC	GRCh37	19	18974277	18974277	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	77	490	0	ENST00000262803.5:c.2631G>C	p.Lys877Asn	p.K877N	ENST00000262803	NM_002911.3	877	aaG/aaC																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743908	40743908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	75	470	0	ENST00000373198.4:c.3087C>A	p.Asp1029Glu	p.D1029E	ENST00000373198	NM_133170.3	1029	gaC/gaA																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522680	176522680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	72	602	0	ENST00000292408.4:c.1777G>T	p.Ala593Ser	p.A593S	ENST00000292408	NM_213647.1	593	Gcc/Tcc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120785	94120785	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	74	482	0	ENST00000369303.4:c.266G>A	p.Trp89Ter	p.W89*	ENST00000369303	NM_004440.3	89	tGg/tAg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1920274	1920274	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	43	431	0	ENST00000382895.3:c.1334C>G	p.Thr445Arg	p.T445R	ENST00000382895	NM_133330.2	445	aCa/aGa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52598082	52598082	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	171	454	0	ENST00000394830.3:c.3784G>C	p.Glu1262Gln	p.E1262Q	ENST00000394830	NM_018313.4	1262	Gaa/Caa																																																																															
EZH2	2146	MSKCC	GRCh37	7	148515086	148515086	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	234	601	0	ENST00000320356.2:c.1123A>T	p.Ile375Phe	p.I375F	ENST00000320356	NM_004456.4	375	Att/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577152	7577152	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	TG			P-0065465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	221	550	2	ENST00000269305.4:c.786delinsCA	p.Asn263LysfsTer9	p.N263Kfs*9	ENST00000269305	NM_001126112.2	262	ggT/ggCA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1202793339		P-0065526-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	553	636	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
ERCC5	2073	MSKCC	GRCh37	13	103525620	103525620	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149859074		P-0065526-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	129	322	0	ENST00000355739.4:c.2891G>A	p.Arg964Gln	p.R964Q	ENST00000355739	NM_000123.3	964	cGg/cAg																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33680364	33680364	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0065526-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			51	29	64	0	ENST00000308377.4:c.1913A>C	p.Asn638Thr	p.N638T	ENST00000308377	NM_152270.3	638	aAc/aCc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435736	56435949	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGGAGTCACTGGCTGGCCCATCTGCCAGGTACCCACTGCGTTCTGTGCAATAGCTTTCTCCAGATCCACTGCTGTCAGGGGGCCTGGCCCGGCGTAGGGGCACTGGGCAAGCAGCAGGGTGCTGTGAGGTGGATTGGAGGTGGCTCAGTCCCCAGCCTTGTGCATAGGGGTGCTGGGCTCCTGCCAGGCGCTGCTGCTCTCCTGGAGCCCGG	GCTGGAGTCACTGGCTGGCCCATCTGCCAGGTACCCACTGCGTTCTGTGCAATAGCTTTCTCCAGATCCACTGCTGTCAGGGGGCCTGGCCCGGCGTAGGGGCACTGGGCAAGCAGCAGGGTGCTGTGAGGTGGATTGGAGGTGGCTCAGTCCCCAGCCTTGTGCATAGGGGTGCTGGGCTCCTGCCAGGCGCTGCTGCTCTCCTGGAGCCCGG	-			P-0065526-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	256	471	0	ENST00000407977.2:c.1188_1401del	p.Arg397GlnfsTer34	p.R397Qfs*34	ENST00000407977		396	ccCCGGGCTCCAGGAGAGCAGCAGCGCCTGGCAGGAGCCCAGCACCCCTATGCACAAGGCTGGGGACTGAGCCACCTCCAATCCACCTCACAGCACCCTGCTGCTTGCCCAGTGCCCCTACGCCGGGCCAGGCCCCCTGACAGCAGTGGATCTGGAGAAAGCTATTGCACAGAACGCAGTGGGTACCTGGCAGATGGGCCAGCCAGTGACTCCAGC/cc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31401666	31401666	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065526-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	100	249	0	ENST00000344624.3:c.3998A>T	p.Asn1333Ile	p.N1333I	ENST00000344624		1333	aAt/aTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0065550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	52	218	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640008	3640008	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202032197		P-0065550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	81	490	0	ENST00000294008.3:c.3631G>A	p.Glu1211Lys	p.E1211K	ENST00000294008	NM_032444.2	1211	Gaa/Aaa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176176059	176176059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	66	485	0	ENST00000367669.3:c.56C>T	p.Ser19Leu	p.S19L	ENST00000367669	NM_022457.5	19	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0065954-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			252	141	467	0	ENST00000269305.4:c.782+1G>C		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
ETV1	2115	MSKCC	GRCh37	7	13940465	13940465	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0065954-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			203	35	407	0	ENST00000405192.2:c.1042-1G>T		p.X348_splice	ENST00000405192	NM_001163147.1	348																																																																																
HGF	3082	MSKCC	GRCh37	7	81332075	81332075	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-			P-0065954-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			150	14	396	0	ENST00000222390.5:c.2011-2del		p.X671_splice	ENST00000222390	NM_000601.4	671																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56161177	56161177	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065954-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			209	20	333	0	ENST00000399503.3:c.1046G>C	p.Cys349Ser	p.C349S	ENST00000399503	NM_005921.1	349	tGt/tCt																																																																															
ARAF	369	MSKCC	GRCh37	X	47426045	47426045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065954-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			358	21	470	0	ENST00000377045.4:c.565A>G	p.Thr189Ala	p.T189A	ENST00000377045	NM_001654.4	189	Acc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934874		P-0065997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	105	488	0	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39742679	39742679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	49	425	0	ENST00000361337.2:c.1522C>T	p.Arg508Cys	p.R508C	ENST00000361337	NM_003286.2	508	Cgt/Tgt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30102089	30102089	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0065997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	13	333	0	ENST00000331968.5:c.1378A>C	p.Ser460Arg	p.S460R	ENST00000331968	NM_002742.2	460	Agc/Cgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097790	27097790	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	71	481	0	ENST00000324856.7:c.3379C>T	p.Gln1127Ter	p.Q1127*	ENST00000324856	NM_006015.4	1127	Cag/Tag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032525	12032525	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			79	23	243	0	ENST00000353533.5:c.961del	p.Val321Ter	p.V321*	ENST00000353533	NM_003010.3	321	Gtg/tg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342693	87342693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	30	385	0	ENST00000277120.3:c.978G>T	p.Glu326Asp	p.E326D	ENST00000277120		326	gaG/gaT																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264281	30264281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	35	234	0	ENST00000322652.5:c.16C>T	p.His6Tyr	p.H6Y	ENST00000322652	NM_015355.2	6	Cac/Tac																																																																															
PARP1	142	MSKCC	GRCh37	1	226566850	226566850	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	26	389	0	ENST00000366794.5:c.1738G>C	p.Glu580Gln	p.E580Q	ENST00000366794	NM_001618.3	580	Gaa/Caa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0066248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	20	201	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68835596	68835596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587783047		P-0066248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	159	457	0	ENST00000261769.5:c.187C>T	p.Arg63Ter	p.R63*	ENST00000261769	NM_004360.3	63	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0066248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	59	478	0	ENST00000269305.4:c.497C>G	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tGa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021828	71021828	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0066248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	139	305	0	ENST00000318789.4:c.1531-1G>C		p.X511_splice	ENST00000318789	NM_032682.5	511																																																																																
BRAF	673	MSKCC	GRCh37	7	140501213	140501213	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0066248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	47	256	0	ENST00000288602.6:c.859G>C	p.Asp287His	p.D287H	ENST00000288602	NM_004333.4	287	Gat/Cat																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070315	37070315	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs730881741		P-0066248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	181	403	0	ENST00000231790.2:c.1450G>T	p.Asp484Tyr	p.D484Y	ENST00000231790	NM_000249.3	484	Gat/Tat																																																																															
TET1	80312	MSKCC	GRCh37	10	70333096	70333096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	200	381	0	ENST00000373644.4:c.1001C>T	p.Ser334Leu	p.S334L	ENST00000373644	NM_030625.2	334	tCa/tTa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52668677	52668677	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	57	292	0	ENST00000394830.3:c.1242G>C	p.Lys414Asn	p.K414N	ENST00000394830	NM_018313.4	414	aaG/aaC																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52668799	52668799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	49	332	0	ENST00000394830.3:c.1120G>A	p.Glu374Lys	p.E374K	ENST00000394830	NM_018313.4	374	Gaa/Aaa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52668805	52668805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	44	326	0	ENST00000394830.3:c.1114G>A	p.Glu372Lys	p.E372K	ENST00000394830	NM_018313.4	372	Gaa/Aaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467493	66467493	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1208833706		P-0066248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	176	409	0	ENST00000273854.3:c.776C>T	p.Ser259Leu	p.S259L	ENST00000273854	NM_004439.5	259	tCa/tTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087944	27087944	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	127	443	0	ENST00000324856.7:c.2231C>G	p.Ser744Ter	p.S744*	ENST00000324856	NM_006015.4	744	tCa/tGa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913381		P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	343	461	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	379	630	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225379426	225379426	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	128	358	0	ENST00000264414.4:c.442C>T	p.Arg148Ter	p.R148*	ENST00000264414	NM_003590.4	148	Cga/Tga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610499	10610499	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs541663797		P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	302	446	0	ENST00000171111.5:c.211C>T	p.Arg71Trp	p.R71W	ENST00000171111	NM_203500.1	71	Cgg/Tgg																																																																															
AXL	558	MSKCC	GRCh37	19	41763447	41763447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	323	489	0	ENST00000301178.4:c.2246C>T	p.Pro749Leu	p.P749L	ENST00000301178	NM_021913.4	749	cCa/cTa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39241084	39241084	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730881024		P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	197	320	0	ENST00000402219.2:c.1987A>G	p.Ile663Val	p.I663V	ENST00000402219	NM_005633.3	663	Ata/Gta																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464953	120464953	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	124	415	0	ENST00000256646.2:c.5119G>T	p.Gly1707Cys	p.G1707C	ENST00000256646	NM_024408.3	1707	Ggc/Tgc																																																																															
NF1	4763	MSKCC	GRCh37	17	29533378	29533378	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs878853865		P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	132	394	0	ENST00000358273.4:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000358273	NM_001042492.2	461	Cga/Tga																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250440	26250440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	186	571	0	ENST00000446824.2:c.394C>G	p.Arg132Gly	p.R132G	ENST00000446824	NM_021018.2	132	Cgc/Ggc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29005299	29005299	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	253	325	0	ENST00000282397.4:c.962C>G	p.Ser321Cys	p.S321C	ENST00000282397	NM_002019.4	321	tCt/tGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177993	56177993	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	284	474	0	ENST00000399503.3:c.2966C>A	p.Ser989Tyr	p.S989Y	ENST00000399503	NM_005921.1	989	tCt/tAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105598	11105598	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	327	460	0	ENST00000344626.4:c.1515del	p.Thr506ArgfsTer107	p.T506Rfs*107	ENST00000344626	NM_003072.3	505	gCc/gc																																																																															
SDHC	6391	MSKCC	GRCh37	1	161326518	161326518	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	107	126	0	ENST00000367975.2:c.293C>G	p.Ser98Cys	p.S98C	ENST00000367975	NM_003001.3	98	tCt/tGt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149456895	149456895	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	348	532	0	ENST00000286301.3:c.833G>C	p.Cys278Ser	p.C278S	ENST00000286301	NM_005211.3	278	tGc/tCc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390219	89390219	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	211	389	0	ENST00000336596.2:c.968C>A	p.Thr323Asn	p.T323N	ENST00000336596	NM_005233.5	323	aCc/aAc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937973	36937973	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	334	626	0	ENST00000361632.4:c.863A>T	p.Glu288Val	p.E288V	ENST00000361632		288	gAg/gTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212154	5212154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	47	558	0	ENST00000357368.4:c.4877C>T	p.Ser1626Phe	p.S1626F	ENST00000357368	NM_002850.3	1626	tCc/tTc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212140	5212140	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1455190303		P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	48	560	0	ENST00000357368.4:c.4891A>G	p.Met1631Val	p.M1631V	ENST00000357368	NM_002850.3	1631	Atg/Gtg																																																																															
CTR9	9646	MSKCC	GRCh37	11	10794131	10794131	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	25	393	0	ENST00000361367.2:c.2509G>C	p.Glu837Gln	p.E837Q	ENST00000361367	NM_014633.3	837	Gaa/Caa																																																																															
ATM	472	MSKCC	GRCh37	11	108127063	108127063	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	25	267	0	ENST00000278616.4:c.2246C>G	p.Ala749Gly	p.A749G	ENST00000278616	NM_000051.3	749	gCc/gGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432237	49432237	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	324	588	0	ENST00000301067.7:c.8902C>G	p.Pro2968Ala	p.P2968A	ENST00000301067	NM_003482.3	2968	Ccg/Gcg																																																																															
NPM1	4869	MSKCC	GRCh37	5	170827897	170827897	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	181	243	0	ENST00000296930.5:c.637G>C	p.Asp213His	p.D213H	ENST00000296930	NM_002520.6	213	Gac/Cac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012416	152012416	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	94	393	0	ENST00000262189.6:c.397C>A	p.Leu133Ile	p.L133I	ENST00000262189	NM_170606.2	133	Ctc/Atc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46255786	46255786	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	126	323	0	ENST00000371998.3:c.398A>T	p.Asn133Ile	p.N133I	ENST00000371998		133	aAc/aTc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225338987	225338987	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs766471279		P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	161	334	0	ENST00000264414.4:c.2282G>T	p.Arg761Leu	p.R761L	ENST00000264414	NM_003590.4	761	cGc/cTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444943	49444996	+	inframe_deletion	In_Frame_Del	DEL	GCATGGCTCCTCAGACTGGGGGGACAGGTGTGATTCCTCAGGTTGGGGGGACAA	GCATGGCTCCTCAGACTGGGGGGACAGGTGTGATTCCTCAGGTTGGGGGGACAA	-			P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	224	529	0	ENST00000301067.7:c.2470_2523del	p.Gln827_Pro844del	p.Q827_P844del	ENST00000301067	NM_003482.3	824	TTGTCCCCCCAACCTGAGGAATCACACCTGTCCCCCCAGTCTGAGGAGCCATGC/-																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502708	149502708	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	341	444	0	ENST00000261799.4:c.2080C>A	p.His694Asn	p.H694N	ENST00000261799	NM_002609.3	694	Cac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	439	496	0	ENST00000269305.4:c.589G>C	p.Val197Leu	p.V197L	ENST00000269305	NM_001126112.2	197	Gtg/Ctg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060568	38060613	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	AGCTAGGAAGTGTTTAGGACGGGTCTGGAATACACACCTTGGTAGT	AGCTAGGAAGTGTTTAGGACGGGTCTGGAATACACACCTTGGTAGT	-			P-0066350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	245	588	0	ENST00000250448.2:c.1376_*2del		p.*459*	ENST00000250448	NM_004496.3	459																																																																																
SETD2	29072	MSKCC	GRCh37	3	47163714	47163714	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	131	374	0	ENST00000409792.3:c.2412G>T	p.Leu804Phe	p.L804F	ENST00000409792	NM_014159.6	804	ttG/ttT																																																																															
SMO	6608	MSKCC	GRCh37	7	128845593	128845593	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	40	432	0	ENST00000249373.3:c.890C>G	p.Ala297Gly	p.A297G	ENST00000249373	NM_005631.4	297	gCa/gGa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98220424	98220424	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs779388970		P-0066350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	52	358	0	ENST00000331920.6:c.3039C>A	p.Tyr1013Ter	p.Y1013*	ENST00000331920	NM_000264.3	1013	taC/taA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0066455-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	125	588	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286219	66286219	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066455-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	77	378	0	ENST00000273854.3:c.1467G>A	p.Trp489Ter	p.W489*	ENST00000273854	NM_004439.5	489	tgG/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066455-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	135	421	0	ENST00000257430.4:c.3871del	p.Gln1291ArgfsTer14	p.Q1291Rfs*14	ENST00000257430	NM_000038.5	1291	Cag/ag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115930	8115931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAGCCTGTCCTTTGGACCACA			P-0066911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	30	449	0	ENST00000346208.3:c.1280_1301dup	p.His434GlnfsTer80	p.H434Qfs*80	ENST00000346208		426	tcc/tCCAGCCTGTCCTTTGGACCACAcc																																																																															
KIT	3815	MSKCC	GRCh37	4	55565875	55565875	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	22	305	0	ENST00000288135.5:c.699C>G	p.Cys233Trp	p.C233W	ENST00000288135	NM_000222.2	233	tgC/tgG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753660142		P-0067056-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			299	191	621	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128347973	128347973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757433296		P-0067056-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	136	532	0	ENST00000265960.3:c.532G>A	p.Asp178Asn	p.D178N	ENST00000265960	NM_001006617.1	178	Gat/Aat																																																																															
FH	2271	MSKCC	GRCh37	1	241676902	241676902	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0067056-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			321	171	365	0	ENST00000366560.3:c.378+1del		p.X126_splice	ENST00000366560	NM_000143.3	126																																																																																
ARID2	196528	MSKCC	GRCh37	12	46242699	46242699	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067056-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			211	94	481	0	ENST00000334344.6:c.1661G>T	p.Ser554Ile	p.S554I	ENST00000334344	NM_152641.2	554	aGt/aTt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38963030	38963030	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067056-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	117	513	0	ENST00000357387.3:c.1514A>C	p.His505Pro	p.H505P	ENST00000357387	NM_152756.3	505	cAc/cCc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373398	118373398	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067066-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	107	541	0	ENST00000534358.1:c.6792del	p.Thr2265ProfsTer12	p.T2265Pfs*12	ENST00000534358	NM_005933.3	2264	tCc/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753660142		P-0067146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	62	585	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																															
TP63	8626	MSKCC	GRCh37	3	189586422	189586422	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866267914		P-0067146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	1977	574	0	ENST00000264731.3:c.1046G>A	p.Gly349Glu	p.G349E	ENST00000264731	NM_003722.4	349	gGa/gAa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682187	37682187	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	20	547	0	ENST00000447079.4:c.3378A>C	p.Gln1126His	p.Q1126H	ENST00000447079	NM_015083.1	1126	caA/caC																																																																															
EP300	2033	MSKCC	GRCh37	22	41564500	41564500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	59	519	0	ENST00000263253.7:c.3922G>A	p.Asp1308Asn	p.D1308N	ENST00000263253	NM_001429.3	1308	Gac/Aac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484260	8484260	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	22	408	0	ENST00000356435.5:c.3272G>T	p.Ser1091Ile	p.S1091I	ENST00000356435		1091	aGt/aTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140624496	140624498	+	missense_variant	Missense_Mutation	ONP	GCC	GCC	TTT			P-0067146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	33	523	1	ENST00000288602.6:c.6_8delinsAAA	p.Ala3Lys	p.A3K	ENST00000288602	NM_004333.4	2	gcGGCg/gcAAAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433019	49433019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	51	574	0	ENST00000301067.7:c.8352G>T	p.Met2784Ile	p.M2784I	ENST00000301067	NM_003482.3	2784	atG/atT																																																																															
CASP8	841	MSKCC	GRCh37	2	202131505	202131505	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	26	545	0	ENST00000358485.4:c.473del	p.Ser158LeufsTer14	p.S158Lfs*14	ENST00000358485	NM_001080125.1	158	tCt/tt																																																																															
TEK	7010	MSKCC	GRCh37	9	27209139	27209139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	27	429	0	ENST00000380036.4:c.2596C>T	p.His866Tyr	p.H866Y	ENST00000380036	NM_000459.3	866	Cac/Tac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918313	44918313	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	44	355	0	ENST00000377967.4:c.938A>T	p.Lys313Ile	p.K313I	ENST00000377967	NM_021140.2	313	aAa/aTa																																																																															
ATRX	546	MSKCC	GRCh37	X	76907812	76907812	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	39	470	0	ENST00000373344.5:c.4349A>C	p.Glu1450Ala	p.E1450A	ENST00000373344	NM_000489.3	1450	gAa/gCa																																																																															
UPF1	5976	MSKCC	GRCh37	19	18966733	18966733	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0067146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	31	548	0	ENST00000262803.5:c.1545-1G>A		p.X515_splice	ENST00000262803	NM_002911.3	515																																																																																
STK11	6794	MSKCC	GRCh37	19	1218492	1218492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131690925		P-0067214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	30	426	0	ENST00000326873.7:c.367C>T	p.Gln123Ter	p.Q123*	ENST00000326873	NM_000455.4	123	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0067214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	52	318	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
LYN	4067	MSKCC	GRCh37	8	56864525	56864525	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs868430124		P-0067214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	54	377	0	ENST00000519728.1:c.488G>A	p.Gly163Glu	p.G163E	ENST00000519728	NM_002350.3	163	gGa/gAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118392729	118392729	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	38	470	0	ENST00000534358.1:c.11761A>T	p.Ile3921Phe	p.I3921F	ENST00000534358	NM_005933.3	3921	Atc/Ttc																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96931076	96931076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	42	458	0	ENST00000258439.3:c.44G>A	p.Arg15Gln	p.R15Q	ENST00000258439	NM_001193304.2	15	cGg/cAg																																																																															
RET	5979	MSKCC	GRCh37	10	43596005	43596005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	64	455	0	ENST00000355710.3:c.172G>T	p.Asp58Tyr	p.D58Y	ENST00000355710	NM_020975.4	58	Gac/Tac																																																																															
ATM	472	MSKCC	GRCh37	11	108165703	108165703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	31	450	0	ENST00000278616.4:c.4826C>T	p.Thr1609Ile	p.T1609I	ENST00000278616	NM_000051.3	1609	aCa/aTa																																																																															
NBN	4683	MSKCC	GRCh37	8	90967613	90967614	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	50	415	0	ENST00000265433.3:c.1294dup	p.Ser432PhefsTer4	p.S432Ffs*4	ENST00000265433	NM_002485.4	432	tca/tTca																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317464	1317464	+	downstream_gene_variant	3'Flank	SNP	T	T	A			P-0067214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	42	473	0				ENST00000381566																																																																																		
WT1	7490	MSKCC	GRCh37	11	32456455	32456455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	33	428	0	ENST00000332351.3:c.437G>C	p.Trp146Ser	p.W146S	ENST00000332351	NM_024426.4	146	tGg/tCg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110585	8110585	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	33	450	0	ENST00000585124.1:c.307G>T	p.Val103Leu	p.V103L	ENST00000585124	NM_004217.3	103	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0067314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	68	433	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0067314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	19	359	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112174658	112174658	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	61	377	0	ENST00000257430.4:c.3367C>T	p.Gln1123Ter	p.Q1123*	ENST00000257430	NM_000038.5	1123	Caa/Taa																																																																															
TP63	8626	MSKCC	GRCh37	3	189604298	189604298	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138832017		P-0067314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	37	413	0	ENST00000264731.3:c.1465G>A	p.Ala489Thr	p.A489T	ENST00000264731	NM_003722.4	489	Gcc/Acc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50827554	50827555	+	missense_variant	Missense_Mutation	DNP	TT	TT	CG			P-0067314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	33	298	1	ENST00000398568.2:c.2439_2440delinsCG	p.Cys814Gly	p.C814G	ENST00000398568	NM_001042412.1	813	ttTTgt/ttCGgt																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150921665	150921665	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	32	419	0	ENST00000271640.5:c.1335C>G	p.Phe445Leu	p.F445L	ENST00000271640	NM_001145415.1	445	ttC/ttG																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0067327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	143	391	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786204041		P-0067327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	197	528	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024354	31024354	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1327515633		P-0067327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	457	448	0	ENST00000375687.4:c.3839T>C	p.Ile1280Thr	p.I1280T	ENST00000375687	NM_015338.5	1280	aTc/aCc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509384	106509384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1388270746		P-0067327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	154	472	0	ENST00000359195.3:c.1378C>T	p.Leu460Phe	p.L460F	ENST00000359195	NM_002649.2	460	Ctt/Ttt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141595381	141595382	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0067327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			859	72	538	0	ENST00000220592.5:c.51dup	p.Ile18HisfsTer11	p.I18Hfs*11	ENST00000220592	NM_012154.3	17	-/C																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	271	754	0	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5265145	5265145	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748255589		P-0067352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	103	736	0	ENST00000357368.4:c.442C>T	p.Arg148Trp	p.R148W	ENST00000357368	NM_002850.3	148	Cgg/Tgg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692917	89692917	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1085308046		P-0067352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	139	589	0	ENST00000371953.3:c.401T>C	p.Met134Thr	p.M134T	ENST00000371953	NM_000314.4	134	aTg/aCg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736248	243736248	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0067352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	187	512	0	ENST00000263826.5:c.799A>T	p.Ile267Phe	p.I267F	ENST00000263826	NM_005465.4	267	Att/Ttt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38272101	38272101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771078736		P-0067352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	109	603	0	ENST00000425967.3:c.2117G>A	p.Arg706Gln	p.R706Q	ENST00000425967	NM_001174067.1	706	cGg/cAg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591103	67591104	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTAAACCAGACC			P-0067352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	69	576	0	ENST00000274335.5:c.1700_1711dup	p.Lys567_Leu570dup	p.K567_L570dup	ENST00000274335		567	att/aTTAAACCAGACCtt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588950	67588951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGAG			P-0067352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	89	588	0	ENST00000274335.5:c.1042_1045dup	p.Asp349AlafsTer16	p.D349Afs*16	ENST00000274335		347	-/CGAG																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0067395-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	115	133	1	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564083	139564083	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs574267042		P-0067395-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	53	350	0	ENST00000308874.7:c.223C>T	p.Arg75Cys	p.R75C	ENST00000308874		75	Cgc/Tgc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067395-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	136	230	0	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956825	68956825	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs184081186		P-0067395-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	50	130	0	ENST00000288368.4:c.943G>A	p.Ala315Thr	p.A315T	ENST00000288368	NM_024870.2	315	Gct/Act																																																																															
APC	324	MSKCC	GRCh37	5	112175759	112175759	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067395-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	32	179	0	ENST00000257430.4:c.4468del	p.His1490IlefsTer17	p.H1490Ifs*17	ENST00000257430	NM_000038.5	1490	Cat/at																																																																															
PTEN	5728	MSKCC	GRCh37	10	89725055	89725055	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0067395-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	29	56	0	ENST00000371953.3:c.1038C>A	p.Tyr346Ter	p.Y346*	ENST00000371953	NM_000314.4	346	taC/taA																																																																															
TP53	7157	MSKCC	GRCh37	17	7590693	7590693	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0067395-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	125	308	0	ENST00000269305.4:c.-29+2T>G		p.X10_splice	ENST00000269305	NM_001126112.2	10																																																																																
NF1	4763	MSKCC	GRCh37	17	29678311	29679333	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAAAATAGCTACGAGTAGATTTTAAGTATTCTCACCACAAAAGATAAATATATGAGGTAACACATATGTTAATTTGCTTGATTTAGCCATTCTACAATGTAAACATTTTATTTATTTTTATTTTTCTTTATTAATTTTTTTTGAGACAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTAACACAATCTCGGCTCACTACAACCTCCGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCATCCTCCCGAGTAGCTGGGATTACAGGCGCGTGCCACCATGCCCAGCTAATTTTTGTATTTTTGTAGAGATGGGGTTTCACCATGTTGGGCAAGCTGGTCTTGAACTCCTGACCTCAGGTGATCCGCCTGCCTCGGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACAGCGCCCAGCCAATGTAAACATATTTTAAAACATCATGTTGTACACCAAGCTTGCTCAACCCATGGCCTGCAGGCCGCACGCAGCCCAGGATGGCTTTGAATGCAGCCCAACACAAATTTGTAAACTTTCTTAAAACATTAAGTGATTTTTTGGGGTTTTTTTTTTTTTTTAAGCTCATCAACTGTAGTTAGTGTTAGTGTATTTTATATGTGGCCCAGTATATTCTTCTAATTCCAGTGTGGCCCAGGAAAGCTAAGAGATTGGACACCCCTGTTGCTATACCTTTTTATTTGTCAGCTTTTAAAAATTGCAGTACAGATCTTTTTGTTCAGCATTTGGTGAGTACCTACTATGTGCAAGATACTATGGCAAGAAAGTTGATAATTCCTAGGGATACACCAAGAGTTTGTATCCTAAAGCCCTTTAAAGTGCAATTTTAAAATTAATTGATTGCTGTTGTTAGGAAATAGGACAGCCACTTGGAAGGAGCAAACGATGGTTGTATTTGTCACCATATTAATTGATTTTTCTCTATTGTTTTCATCTTTCAGGACACTAAAGGAGACTCAGCCATGGTCCTCTCCCAAAGGTTCTGAAGGATACCTTGCAG	GAAAATAGCTACGAGTAGATTTTAAGTATTCTCACCACAAAAGATAAATATATGAGGTAACACATATGTTAATTTGCTTGATTTAGCCATTCTACAATGTAAACATTTTATTTATTTTTATTTTTCTTTATTAATTTTTTTTGAGACAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTAACACAATCTCGGCTCACTACAACCTCCGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCATCCTCCCGAGTAGCTGGGATTACAGGCGCGTGCCACCATGCCCAGCTAATTTTTGTATTTTTGTAGAGATGGGGTTTCACCATGTTGGGCAAGCTGGTCTTGAACTCCTGACCTCAGGTGATCCGCCTGCCTCGGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACAGCGCCCAGCCAATGTAAACATATTTTAAAACATCATGTTGTACACCAAGCTTGCTCAACCCATGGCCTGCAGGCCGCACGCAGCCCAGGATGGCTTTGAATGCAGCCCAACACAAATTTGTAAACTTTCTTAAAACATTAAGTGATTTTTTGGGGTTTTTTTTTTTTTTTAAGCTCATCAACTGTAGTTAGTGTTAGTGTATTTTATATGTGGCCCAGTATATTCTTCTAATTCCAGTGTGGCCCAGGAAAGCTAAGAGATTGGACACCCCTGTTGCTATACCTTTTTATTTGTCAGCTTTTAAAAATTGCAGTACAGATCTTTTTGTTCAGCATTTGGTGAGTACCTACTATGTGCAAGATACTATGGCAAGAAAGTTGATAATTCCTAGGGATACACCAAGAGTTTGTATCCTAAAGCCCTTTAAAGTGCAATTTTAAAATTAATTGATTGCTGTTGTTAGGAAATAGGACAGCCACTTGGAAGGAGCAAACGATGGTTGTATTTGTCACCATATTAATTGATTTTTCTCTATTGTTTTCATCTTTCAGGACACTAAAGGAGACTCAGCCATGGTCCTCTCCCAAAGGTTCTGAAGGATACCTTGCAG	-			P-0067395-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			24	125	0	0	ENST00000358273.4:c.7458-964_7516del		p.X2486_splice	ENST00000358273	NM_001042492.2	2486																																																																																
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0067489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	219	368	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112177620	112177620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	116	393	0	ENST00000257430.4:c.6329C>T	p.Ser2110Phe	p.S2110F	ENST00000257430	NM_000038.5	2110	tCc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112174637	112174637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	258	451	0	ENST00000257430.4:c.3346G>T	p.Gly1116Cys	p.G1116C	ENST00000257430	NM_000038.5	1116	Ggt/Tgt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745553	162745553	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0067489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	261	408	0	ENST00000367921.3:c.1968C>A	p.Tyr656Ter	p.Y656*	ENST00000367921	NM_006182.2	656	taC/taA																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641402	23641402	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	125	456	0	ENST00000261584.4:c.2073C>A	p.Ser691Arg	p.S691R	ENST00000261584	NM_024675.3	691	agC/agA																																																																															
APC	324	MSKCC	GRCh37	5	112177696	112177696	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	214	435	0	ENST00000257430.4:c.6405C>G	p.Ile2135Met	p.I2135M	ENST00000257430	NM_000038.5	2135	atC/atG																																																																															
CARD11	84433	MSKCC	GRCh37	7	2952926	2952926	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	98	306	0	ENST00000396946.4:c.3014A>C	p.Lys1005Thr	p.K1005T	ENST00000396946	NM_032415.4	1005	aAg/aCg																																																																															
APC	324	MSKCC	GRCh37	5	112177640	112177640	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587780546		P-0067489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	161	395	0	ENST00000257430.4:c.6349C>G	p.Gln2117Glu	p.Q2117E	ENST00000257430	NM_000038.5	2117	Caa/Gaa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56862945	56862945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	106	387	0	ENST00000308159.5:c.851G>T	p.Gly284Val	p.G284V	ENST00000308159	NM_014669.4	284	gGc/gTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295904	1295904	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0067489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			723	307	550	0				ENST00000310581	NM_198253.2																																																																																	
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0067525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	20	515	1	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577555	7577555	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs375874539		P-0067525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	267	568	0	ENST00000269305.4:c.726C>G	p.Cys242Trp	p.C242W	ENST00000269305	NM_001126112.2	242	tgC/tgG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936096	178936096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	39	189	0	ENST00000263967.3:c.1638G>C	p.Gln546His	p.Q546H	ENST00000263967	NM_006218.2	546	caG/caC																																																																															
STK11	6794	MSKCC	GRCh37	19	1219384	1219384	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0067525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	166	649	0	ENST00000326873.7:c.436A>T	p.Lys146Ter	p.K146*	ENST00000326873	NM_000455.4	146	Aag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591916	48591916	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	318	631	0	ENST00000342988.3:c.1079A>T	p.Asp360Val	p.D360V	ENST00000342988	NM_005359.5	360	gAt/gTt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101008	41101008	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	88	574	0	ENST00000373198.4:c.1348C>T	p.Arg450Ter	p.R450*	ENST00000373198	NM_133170.3	450	Cga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217293	66217294	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0067525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	85	530	0	ENST00000273854.3:c.2321_2322del	p.Val774AspfsTer19	p.V774Dfs*19	ENST00000273854	NM_004439.5	774	gTG/g																																																																															
DDR2	4921	MSKCC	GRCh37	1	162725040	162725040	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs149052593		P-0067525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	251	666	0	ENST00000367921.3:c.512A>G	p.Asp171Gly	p.D171G	ENST00000367921	NM_006182.2	171	gAc/gGc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	419087	419087	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs764882331		P-0067525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	30	617	0	ENST00000399788.2:c.3260A>G	p.Lys1087Arg	p.K1087R	ENST00000399788	NM_001042603.1	1087	aAa/aGa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49415885	49415885	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	91	676	0	ENST00000301067.7:c.16462T>A	p.Phe5488Ile	p.F5488I	ENST00000301067	NM_003482.3	5488	Ttt/Att																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46597072	46597073	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TG	TG	-			P-0067525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	37	458	0	ENST00000263734.3:c.886+2_886+3del		p.X296_splice	ENST00000263734	NM_001430.4	296																																																																																
MAP2K4	6416	MSKCC	GRCh37	17	12032593	12032594	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0067525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	192	549	0	ENST00000353533.5:c.1030_1031del	p.Val344GlnfsTer8	p.V344Qfs*8	ENST00000353533	NM_003010.3	343	ttTGtc/tttc																																																																															
ALK	238	MSKCC	GRCh37	2	30143060	30143060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761318889		P-0067525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	253	841	0	ENST00000389048.3:c.466G>A	p.Gly156Arg	p.G156R	ENST00000389048	NM_004304.4	156	Ggg/Agg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880254	37880254	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	176	613	0	ENST00000269571.5:c.2298A>T	p.Glu766Asp	p.E766D	ENST00000269571		766	gaA/gaT																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468000	50468000	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0067525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			823	97	686	0	ENST00000331340.3:c.1235T>A	p.Ile412Asn	p.I412N	ENST00000331340	NM_006060.4	412	aTc/aAc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73336247	73336247	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0067525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	149	401	0	ENST00000377767.4:c.2156A>T	p.Lys719Met	p.K719M	ENST00000377767	NM_014953.3	719	aAg/aTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662526	227662526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			753	257	797	0	ENST00000305123.5:c.929C>A	p.Ala310Asp	p.A310D	ENST00000305123	NM_005544.2	310	gCc/gAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045484	47045493	+	frameshift_variant	Frame_Shift_Del	DEL	TGCAGCTGAA	TGCAGCTGAA	-			P-0067525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	220	748	0	ENST00000329236.7:c.2217_2226del	p.Ala741GlufsTer25	p.A741Efs*25	ENST00000329236	NM_001204466.1	739	cgTGCAGCTGAA/cg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0067550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	118	418	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3824629	3824629	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778882385		P-0067550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	52	476	0	ENST00000262367.5:c.2224C>T	p.Arg742Cys	p.R742C	ENST00000262367	NM_004380.2	742	Cgt/Tgt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89337298	89337298	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	57	294	0	ENST00000301030.4:c.7733T>C	p.Val2578Ala	p.V2578A	ENST00000301030	NM_001256183.1	2578	gTg/gCg																																																																															
SYK	6850	MSKCC	GRCh37	9	93650030	93650030	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0067550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	32	372	0	ENST00000375746.1:c.1582-1G>C		p.X528_splice	ENST00000375746	NM_001174167.1	528																																																																																
POLE	5426	MSKCC	GRCh37	12	133248889	133248889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	63	489	0	ENST00000320574.5:c.1706T>C	p.Phe569Ser	p.F569S	ENST00000320574	NM_006231.2	569	tTc/tCc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851382	63851382	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	67	532	0	ENST00000279873.7:c.2160G>C	p.Lys720Asn	p.K720N	ENST00000279873	NM_032199.2	720	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs876660254		P-0067668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	273	523	0	ENST00000269305.4:c.568C>A	p.Pro190Thr	p.P190T	ENST00000269305	NM_001126112.2	190	Cct/Act																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58677990	58677990	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1375271471		P-0067668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			702	64	375	0	ENST00000305921.3:c.215C>T	p.Ala72Val	p.A72V	ENST00000305921	NM_003620.3	72	gCc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112173730	112173730	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	178	358	0	ENST00000257430.4:c.2442del	p.Phe814LeufsTer6	p.F814Lfs*6	ENST00000257430	NM_000038.5	813	aaT/aa																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46509408	46509410	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0067668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	118	460	0	ENST00000262741.5:c.1321_1323del	p.Asn441del	p.N441del	ENST00000262741	NM_003629.3	441	AAC/-																																																																															
AKT2	208	MSKCC	GRCh37	19	40761150	40761150	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	87	410	0	ENST00000392038.2:c.202C>G	p.Pro68Ala	p.P68A	ENST00000392038	NM_001626.4	68	Ccg/Gcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0067823-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	116	408	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112175378	112175378	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0067823-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	90	383	0	ENST00000257430.4:c.4087A>T	p.Lys1363Ter	p.K1363*	ENST00000257430	NM_000038.5	1363	Aaa/Taa																																																																															
TET1	80312	MSKCC	GRCh37	10	70405884	70405884	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs748349829		P-0067823-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	56	403	0	ENST00000373644.4:c.3398A>G	p.Asn1133Ser	p.N1133S	ENST00000373644	NM_030625.2	1133	aAt/aGt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920447	114920447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067823-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	90	334	0	ENST00000543371.1:c.1388G>T	p.Cys463Phe	p.C463F	ENST00000543371	NM_001198531.1	463	tGc/tTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045134	47045134	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782351435		P-0067823-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	79	511	0	ENST00000329236.7:c.2141G>A	p.Arg714Gln	p.R714Q	ENST00000329236	NM_001204466.1	714	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112174983	112174986	+	frameshift_variant	Frame_Shift_Del	DEL	TCCA	TCCA	-			P-0067823-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	49	422	0	ENST00000257430.4:c.3696_3699del	p.His1232GlnfsTer32	p.H1232Qfs*32	ENST00000257430	NM_000038.5	1231	cTCCAt/ct																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15967461	15967461	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067823-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	103	355	0	ENST00000268712.3:c.5142G>C	p.Arg1714Ser	p.R1714S	ENST00000268712	NM_006311.3	1714	agG/agC																																																																															
HRAS	3265	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28933406		P-0067916-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	159	415	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912120	114912120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067916-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	153	314	0	ENST00000543371.1:c.1190C>T	p.Ala397Val	p.A397V	ENST00000543371	NM_001198531.1	397	gCg/gTg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090515	5090516	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0067916-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	63	312	0	ENST00000381652.3:c.2832_2833del	p.His944GlnfsTer47	p.H944Qfs*47	ENST00000381652	NM_004972.3	944	cAT/c																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111481	8111484	+	frameshift_variant	Frame_Shift_Ins	INS	ACCA	ACCA	TTTCG			P-0067916-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	161	363	2	ENST00000346208.3:c.967_970delinsTTTCG	p.Thr323PhefsTer29	p.T323Ffs*29	ENST00000346208		323	ACCAca/TTTCGca																																																																															
TP53	7157	MSKCC	GRCh37	17	7590694	7590694	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0067932-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			452	59	312	3	ENST00000269305.4:c.-29+1G>A		p.X10_splice	ENST00000269305	NM_001126112.2	10																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134911564	134911564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067932-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			498	42	368	0	ENST00000398015.3:c.2029C>T	p.His677Tyr	p.H677Y	ENST00000398015	NM_004441.4	677	Cat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0067969-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	260	532	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2956956	2956956	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs750486472		P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	128	717	0	ENST00000396946.4:c.2671C>T	p.Arg891Ter	p.R891*	ENST00000396946	NM_032415.4	891	Cga/Tga																																																																															
INSR	3643	MSKCC	GRCh37	19	7119467	7119467	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	144	762	0	ENST00000302850.5:c.3787G>C	p.Glu1263Gln	p.E1263Q	ENST00000302850	NM_000208.2	1263	Gag/Cag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881392	37881392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	109	910	0	ENST00000269571.5:c.2584A>G	p.Thr862Ala	p.T862A	ENST00000269571		862	Aca/Gca																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217180	66217180	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	89	711	0	ENST00000273854.3:c.2435T>C	p.Leu812Pro	p.L812P	ENST00000273854	NM_004439.5	812	cTt/cCt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123164865	123164865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	169	331	0	ENST00000218089.9:c.178G>A	p.Gly60Arg	p.G60R	ENST00000218089	NM_001042749.1	60	Gga/Aga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101427	27101427	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	71	573	0	ENST00000324856.7:c.4709C>G	p.Ser1570Cys	p.S1570C	ENST00000324856	NM_006015.4	1570	tCt/tGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100378	27100378	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	175	826	0	ENST00000324856.7:c.4090C>T	p.Gln1364Ter	p.Q1364*	ENST00000324856	NM_006015.4	1364	Cag/Tag																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912288	29912288	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	119	1041	0	ENST00000376809.5:c.907C>T	p.Gln303Ter	p.Q303*	ENST00000376809	NM_002116.7	303	Cag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877449	40877449	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201441123		P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	141	815	0	ENST00000373198.4:c.2247G>T	p.Gln749His	p.Q749H	ENST00000373198	NM_133170.3	749	caG/caT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	125	542	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PARK2	5071	MSKCC	GRCh37	6	161781146	161781146	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs531247345		P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	112	727	1	ENST00000366898.1:c.1259G>A	p.Arg420His	p.R420H	ENST00000366898	NM_004562.2	420	cGc/cAc																																																																															
KLF5	688	MSKCC	GRCh37	13	73633662	73633662	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	26	547	2	ENST00000377687.4:c.197A>G	p.Gln66Arg	p.Q66R	ENST00000377687	NM_001730.3	66	cAg/cGg																																																																															
FANCC	2176	MSKCC	GRCh37	9	97897720	97897720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	129	657	0	ENST00000289081.3:c.751G>A	p.Glu251Lys	p.E251K	ENST00000289081	NM_000136.2	251	Gaa/Aaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361184	66361184	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	134	792	0	ENST00000273854.3:c.988G>T	p.Glu330Ter	p.E330*	ENST00000273854	NM_004439.5	330	Gag/Tag																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2191335	2191335	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			706	79	852	0	ENST00000349721.2:c.4664A>T	p.Lys1555Met	p.K1555M	ENST00000349721	NM_003070.3	1555	aAg/aTg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396631	30396631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	32	573	0	ENST00000331968.5:c.88G>A	p.Gly30Arg	p.G30R	ENST00000331968	NM_002742.2	30	Ggg/Agg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680458	30680458	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	193	854	0	ENST00000376406.3:c.1261G>C	p.Glu421Gln	p.E421Q	ENST00000376406	NM_014641.2	421	Gag/Cag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99439989	99439989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	119	627	0	ENST00000268035.6:c.957G>A	p.Met319Ile	p.M319I	ENST00000268035	NM_000875.3	319	atG/atA																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900155	101900155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	70	548	0	ENST00000374994.4:c.589G>T	p.Val197Phe	p.V197F	ENST00000374994	NM_004612.2	197	Gtt/Ttt																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80412542	80412542	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1402276757		P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	126	703	0	ENST00000286548.4:c.499G>A	p.Val167Ile	p.V167I	ENST00000286548	NM_002072.3	167	Gta/Ata																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332558	153332558	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	122	800	0	ENST00000281708.4:c.398G>C	p.Arg133Thr	p.R133T	ENST00000281708	NM_033632.3	133	aGa/aCa																																																																															
ATM	472	MSKCC	GRCh37	11	108196850	108196850	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	77	677	0	ENST00000278616.4:c.6873G>A	p.Trp2291Ter	p.W2291*	ENST00000278616	NM_000051.3	2291	tgG/tgA																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801476	1801476	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	74	796	0	ENST00000260795.2:c.382G>T	p.Ala128Ser	p.A128S	ENST00000260795		128	Gct/Tct																																																																															
AR	367	MSKCC	GRCh37	X	66941782	66941782	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	84	340	0	ENST00000374690.3:c.2426A>C	p.Lys809Thr	p.K809T	ENST00000374690	NM_000044.3	809	aAa/aCa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828165	243828165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	107	464	0	ENST00000263826.5:c.193G>A	p.Glu65Lys	p.E65K	ENST00000263826	NM_005465.4	65	Gaa/Aaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68950488	68950488	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			716	40	602	0	ENST00000288368.4:c.800T>A	p.Leu267His	p.L267H	ENST00000288368	NM_024870.2	267	cTt/cAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0068064-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			607	47	287	0				ENST00000310581	NM_198253.2																																																																																	
NFE2L2	4780	MSKCC	GRCh37	2	178098949	178098978	+	inframe_deletion	In_Frame_Del	DEL	TACTCCAAGATCTATATCTTGCCTCCAAAG	TACTCCAAGATCTATATCTTGCCTCCAAAG	-			P-0068064-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			652	80	306	0	ENST00000397062.3:c.67_96del	p.Leu23_Val32del	p.L23_V32del	ENST00000397062	NM_006164.4	23	CTTTGGAGGCAAGATATAGATCTTGGAGTA/-																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094483	27094483	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068064-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			740	78	368	0	ENST00000324856.7:c.3191T>G	p.Leu1064Trp	p.L1064W	ENST00000324856	NM_006015.4	1064	tTg/tGg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717764	89717780	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATGCTAAAAAAGGTTT	GATGCTAAAAAAGGTTT	-			P-0068064-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			377	40	197	0	ENST00000371953.3:c.790_801+5del		p.X264_splice	ENST00000371953	NM_000314.4	264																																																																																
EPHA7	2045	MSKCC	GRCh37	6	94066736	94066736	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068064-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			618	33	322	0	ENST00000369303.4:c.1023C>G	p.Asn341Lys	p.N341K	ENST00000369303	NM_004440.3	341	aaC/aaG																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622133	1622133	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068064-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			746	57	448	0	ENST00000344749.5:c.742C>G	p.Pro248Ala	p.P248A	ENST00000344749	NM_001136139.2	248	Ccc/Gcc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411711	63411711	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068064-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			357	101	215	0	ENST00000330258.3:c.1456G>T	p.Ala486Ser	p.A486S	ENST00000330258	NM_152424.3	486	Gcc/Tcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218502	36218502	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068064-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			655	61	354	0	ENST00000222270.7:c.4283del	p.Pro1428HisfsTer25	p.P1428Hfs*25	ENST00000222270	NM_014727.1	1427	ggC/gg																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72891511	72891511	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068064-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			688	94	295	0	ENST00000325599.8:c.251A>G	p.His84Arg	p.H84R	ENST00000325599	NM_018130.2	84	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0068155-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			690	102	715	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0068155-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			599	104	669	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
ALK	238	MSKCC	GRCh37	2	29443697	29443697	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs281864719		P-0068155-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			551	108	447	0	ENST00000389048.3:c.3520T>G	p.Phe1174Val	p.F1174V	ENST00000389048	NM_004304.4	1174	Ttc/Gtc																																																																															
ALK	238	MSKCC	GRCh37	2	29445213	29445213	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519698		P-0068155-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			566	65	520	0	ENST00000389048.3:c.3512T>A	p.Ile1171Asn	p.I1171N	ENST00000389048	NM_004304.4	1171	aTc/aAc																																																																															
STK11	6794	MSKCC	GRCh37	19	1219381	1219381	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	59	334	0	ENST00000326873.7:c.433G>T	p.Glu145Ter	p.E145*	ENST00000326873	NM_000455.4	145	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600364	10600364	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	59	456	0	ENST00000171111.5:c.1491G>A	p.Trp497Ter	p.W497*	ENST00000171111	NM_203500.1	497	tgG/tgA																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259111	89259111	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	50	381	0	ENST00000336596.2:c.255C>A	p.Asn85Lys	p.N85K	ENST00000336596	NM_005233.5	85	aaC/aaA																																																																															
AR	367	MSKCC	GRCh37	X	66766261	66766261	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	42	344	0	ENST00000374690.3:c.1273G>T	p.Gly425Trp	p.G425W	ENST00000374690	NM_000044.3	425	Ggg/Tgg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061486	38061486	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	63	380	0	ENST00000250448.2:c.503A>T	p.His168Leu	p.H168L	ENST00000250448	NM_004496.3	168	cAc/cTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923417	9923417	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	47	382	0	ENST00000330684.3:c.1870G>C	p.Gly624Arg	p.G624R	ENST00000330684	NM_001134407.1	624	Ggg/Cgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145645	11145645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	66	382	0	ENST00000344626.4:c.4007G>T	p.Arg1336Leu	p.R1336L	ENST00000344626	NM_003072.3	1336	cGc/cTc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47491296	47491296	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	60	292	0	ENST00000404338.3:c.3877G>T	p.Glu1293Ter	p.E1293*	ENST00000404338	NM_004491.4	1293	Gag/Tag																																																																															
EP300	2033	MSKCC	GRCh37	22	41568653	41568653	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	32	378	0	ENST00000263253.7:c.4603A>C	p.Asn1535His	p.N1535H	ENST00000263253	NM_001429.3	1535	Aat/Cat																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259018	89259018	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	40	335	0	ENST00000336596.2:c.162G>T	p.Glu54Asp	p.E54D	ENST00000336596	NM_005233.5	54	gaG/gaT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484366	8484366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	56	323	0	ENST00000356435.5:c.3166G>A	p.Asp1056Asn	p.D1056N	ENST00000356435		1056	Gat/Aat																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913548	39913548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs768510508		P-0068283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	41	345	0	ENST00000378444.4:c.4780G>T	p.Ala1594Ser	p.A1594S	ENST00000378444	NM_001123385.1	1594	Gcc/Tcc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044699	47044700	+	splice_acceptor_variant	Splice_Site	INS	-	-	G			P-0068283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	76	495	0	ENST00000329236.7:c.1868dup		p.X623_splice	ENST00000329236	NM_001204466.1	623																																																																																
ATRX	546	MSKCC	GRCh37	X	76939735	76939735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	41	374	0	ENST00000373344.5:c.1013C>A	p.Ser338Tyr	p.S338Y	ENST00000373344	NM_000489.3	338	tCt/tAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934574		P-0068289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	104	473	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21968233	21968233	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	109	358	0	ENST00000304494.5:c.466del	p.Asp156IlefsTer37	p.D156Ifs*37	ENST00000304494	NM_000077.4	156	Gat/at																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988270	36988270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	73	342	0	ENST00000354822.5:c.383C>T	p.Pro128Leu	p.P128L	ENST00000354822	NM_001079668.2	128	cCg/cTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819207	3819207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	37	394	0	ENST00000262367.5:c.3028C>T	p.Pro1010Ser	p.P1010S	ENST00000262367	NM_004380.2	1010	Cct/Tct																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983281	149983281	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	45	481	0	ENST00000253339.5:c.2977G>T	p.Glu993Ter	p.E993*	ENST00000253339		993	Gaa/Taa																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38788459	38788459	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	60	327	0	ENST00000348513.6:c.702A>T	p.Leu234Phe	p.L234F	ENST00000348513	NM_003079.4	234	ttA/ttT																																																																															
PMS2	5395	MSKCC	GRCh37	7	6027078	6027078	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs762894051		P-0068289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	25	144	0	ENST00000265849.7:c.1318C>G	p.Pro440Ala	p.P440A	ENST00000265849	NM_000535.5	440	Cca/Gca																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343503	343503	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1328741594		P-0068289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	55	368	0	ENST00000262320.3:c.2171C>T	p.Ala724Val	p.A724V	ENST00000262320	NM_003502.3	724	gCa/gTa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371866	55371866	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	16	378	0	ENST00000297316.4:c.556C>T	p.Gln186Ter	p.Q186*	ENST00000297316	NM_022454.3	186	Cag/Tag																																																																															
APLNR	187	MSKCC	GRCh37	11	57004166	57004166	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	T	T	A			P-0068289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	24	475	0	ENST00000257254.3:c.313A>T	p.Ser105Cys	p.S105C	ENST00000257254		105	Agc/Tgc																																																																															
CIC	23152	MSKCC	GRCh37	19	42791989	42791989	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	45	494	0	ENST00000575354.2:c.793C>G	p.Pro265Ala	p.P265A	ENST00000575354	NM_015125.3	265	Cca/Gca																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109833	115109833	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	102	401	0	ENST00000257566.3:c.2045C>A	p.Ala682Asp	p.A682D	ENST00000257566	NM_016569.3	682	gCc/gAc																																																																															
ATM	472	MSKCC	GRCh37	11	108196935	108196935	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	53	387	0	ENST00000278616.4:c.6958G>T	p.Asp2320Tyr	p.D2320Y	ENST00000278616	NM_000051.3	2320	Gat/Tat																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47440581	47440582	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0068289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	55	353	0	ENST00000404338.3:c.3742_3743delinsTT	p.Gly1248Leu	p.G1248L	ENST00000404338	NM_004491.4	1248	GGg/TTg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800459	32800459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	119	452	0	ENST00000374899.4:c.1088G>T	p.Arg363Leu	p.R363L	ENST00000374899	NM_018833.2	363	cGg/cTg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17387719	17387719	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0068289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	106	394	0	ENST00000359435.4:c.786+1G>T		p.X262_splice	ENST00000359435	NM_001033549.1	262																																																																																
SOX17	64321	MSKCC	GRCh37	8	55372161	55372161	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	15	391	0	ENST00000297316.4:c.851C>G	p.Pro284Arg	p.P284R	ENST00000297316	NM_022454.3	284	cCg/cGg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0068367-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			70	18	168	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2951847	2951847	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868687398		P-0068367-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	41	649	0	ENST00000396946.4:c.3103G>A	p.Glu1035Lys	p.E1035K	ENST00000396946	NM_032415.4	1035	Gaa/Aaa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63810716	63810716	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068367-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	31	517	0	ENST00000279873.7:c.803T>G	p.Val268Gly	p.V268G	ENST00000279873	NM_032199.2	268	gTt/gGt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86665639	86665716	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TTTTCAGATAGTAGTTCAGCACTTTAGTGAAGAACATTACATCTTTTACTTTGCAGGAGAAACTCCAGAACAAGCAGA	TTTTCAGATAGTAGTTCAGCACTTTAGTGAAGAACATTACATCTTTTACTTTGCAGGAGAAACTCCAGAACAAGCAGA	-			P-0068367-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	23	380	0	ENST00000274376.6:c.1620_1697del	p.Cys540_Glu566delinsTrp	p.C540_E566delinsW	ENST00000274376	NM_002890.2	540	tgTTTTCAGATAGTAGTTCAGCACTTTAGTGAAGAACATTACATCTTTTACTTTGCAGGAGAAACTCCAGAACAAGCAGAg/tgg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998354	100998354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068367-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	26	571	0	ENST00000325455.5:c.1448C>T	p.Pro483Leu	p.P483L	ENST00000325455	NM_001202474.3	483	cCg/cTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0068469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			37	58	82	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0068469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	49	172	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0068469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			100	122	218	0	ENST00000269305.4:c.560-1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176522423	176522423	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			211	62	195	0	ENST00000292408.4:c.1612G>C	p.Gly538Arg	p.G538R	ENST00000292408	NM_213647.1	538	Ggt/Cgt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131895039	131895039	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			80	63	102	0	ENST00000265335.6:c.193A>C	p.Thr65Pro	p.T65P	ENST00000265335		65	Aca/Cca																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0068574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	126	291	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579316	7579317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0068574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	194	325	0	ENST00000269305.4:c.370dup	p.Cys124LeufsTer25	p.C124Lfs*25	ENST00000269305	NM_001126112.2	124	tgc/tTgc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412243	139412243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			716	115	352	0	ENST00000277541.6:c.1402C>A	p.Leu468Met	p.L468M	ENST00000277541	NM_017617.3	468	Ctg/Atg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911644	114911644	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0068574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	103	273	0	ENST00000543371.1:c.1161+1G>A		p.X387_splice	ENST00000543371	NM_001198531.1	387																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9857044	9857044	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201707833		P-0068574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	68	361	1	ENST00000330684.3:c.4357G>A	p.Val1453Met	p.V1453M	ENST00000330684	NM_001134407.1	1453	Gtg/Atg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117861	70117861	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	97	370	0	ENST00000245479.2:c.329A>C	p.Asn110Thr	p.N110T	ENST00000245479	NM_000346.3	110	aAc/aCc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31016181	31016181	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1179121574		P-0068574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	375	331	2	ENST00000375687.4:c.427C>T	p.Arg143Ter	p.R143*	ENST00000375687	NM_015338.5	143	Cga/Tga																																																																															
BLM	641	MSKCC	GRCh37	15	91333877	91333880	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGGT	AGGT	-			P-0068574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	85	295	0	ENST00000355112.3:c.2824-2_2825del		p.X942_splice	ENST00000355112	NM_000057.2	942																																																																																
ZRSR2	8233	MSKCC	GRCh37	X	15827443	15827443	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0068638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	41	125	0	ENST00000307771.7:c.557+2T>G		p.X186_splice	ENST00000307771	NM_005089.3	186																																																																																
ATR	545	MSKCC	GRCh37	3	142257365	142257365	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	113	305	0	ENST00000350721.4:c.3684A>T	p.Lys1228Asn	p.K1228N	ENST00000350721	NM_001184.3	1228	aaA/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0068715-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	252	295	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
PIK3R2	5296	MSKCC	GRCh37	19	18278074	18278074	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1131691683		P-0068715-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	49	251	0	ENST00000222254.8:c.1694C>G	p.Pro565Arg	p.P565R	ENST00000222254	NM_005027.3	565	cCg/cGg																																																																															
TRIP13	9319	MSKCC	GRCh37	5	908102	908102	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C	rs1131692330		P-0068715-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	30	241	0	ENST00000166345.3:c.673-1G>C		p.X225_splice	ENST00000166345	NM_004237.3	225																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49432273	49432273	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs777346353		P-0068715-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	42	358	0	ENST00000301067.7:c.8866A>G	p.Thr2956Ala	p.T2956A	ENST00000301067	NM_003482.3	2956	Acc/Gcc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416152	416152	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs759860948		P-0068715-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	51	283	0	ENST00000399788.2:c.4034C>G	p.Ser1345Cys	p.S1345C	ENST00000399788	NM_001042603.1	1345	tCt/tGt																																																																															
RB1	5925	MSKCC	GRCh37	13	48919337	48919337	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0068715-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	49	167	0	ENST00000267163.4:c.500+2T>C		p.X167_splice	ENST00000267163	NM_000321.2	167																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0068749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	128	189	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998898	11998898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	94	326	0	ENST00000353533.5:c.400C>T	p.Arg134Trp	p.R134W	ENST00000353533	NM_003010.3	134	Cgg/Tgg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115711	8115711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	74	372	0	ENST00000346208.3:c.1057C>T	p.Pro353Ser	p.P353S	ENST00000346208		353	Ccc/Tcc																																																																															
HGF	3082	MSKCC	GRCh37	7	81355239	81355239	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	94	310	0	ENST00000222390.5:c.1135C>T	p.Gln379Ter	p.Q379*	ENST00000222390	NM_000601.4	379	Caa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945589	151945602	+	frameshift_variant	Frame_Shift_Del	DEL	CAATTTGATCTTCG	CAATTTGATCTTCG	A			P-0068749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	53	109	0	ENST00000262189.6:c.1917_1930delinsT	p.Glu640LysfsTer6	p.E640Kfs*6	ENST00000262189	NM_170606.2	639	ggCGAAGATCAAATTGaa/ggTaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061028	38061031	+	frameshift_variant	Frame_Shift_Del	DEL	CTAG	CTAG	-			P-0068842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	188	577	0	ENST00000250448.2:c.958_961del	p.Leu320ArgfsTer29	p.L320Rfs*29	ENST00000250448	NM_004496.3	320	CTAGag/ag																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127912030	127912030	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	64	423	0	ENST00000373547.4:c.840A>T	p.Arg280Ser	p.R280S	ENST00000373547	NM_002721.4	280	agA/agT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49449064	49449067	+	frameshift_variant	Frame_Shift_Del	DEL	GGTT	GGTT	-			P-0068842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	81	344	0	ENST00000301067.7:c.41_44del	p.Glu14GlyfsTer115	p.E14Gfs*115	ENST00000301067	NM_003482.3	14	gAACCg/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0068921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	604	414	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
ROS1	6098	MSKCC	GRCh37	6	117683824	117683824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754292558		P-0068921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			828	109	458	0	ENST00000368508.3:c.3323C>T	p.Pro1108Leu	p.P1108L	ENST00000368508	NM_002944.2	1108	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0069084-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	102	393	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0069084-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	158	381	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268138	153268138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1406877044		P-0069084-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	79	363	0	ENST00000281708.4:c.670C>T	p.Arg224Ter	p.R224*	ENST00000281708	NM_033632.3	224	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244214	153244214	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069084-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	124	390	0	ENST00000281708.4:c.1943T>G	p.Leu648Arg	p.L648R	ENST00000281708	NM_033632.3	648	cTa/cGa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048797	180048797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069084-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	69	450	0	ENST00000261937.6:c.1765C>T	p.Arg589Cys	p.R589C	ENST00000261937	NM_182925.4	589	Cgc/Tgc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098557	11098557	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1213473194		P-0069084-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	126	424	0	ENST00000344626.4:c.1075C>T	p.Arg359Trp	p.R359W	ENST00000344626	NM_003072.3	359	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577505	7577505	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	282	296	0	ENST00000269305.4:c.776A>T	p.Asp259Val	p.D259V	ENST00000269305	NM_001126112.2	259	gAc/gTc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89869717	89869717	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs760744752		P-0069103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	282	275	0	ENST00000389301.3:c.742C>T	p.Gln248Ter	p.Q248*	ENST00000389301	NM_000135.2	248	Cag/Tag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18961653	18961653	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	223	294	0	ENST00000262803.5:c.786C>G	p.Ile262Met	p.I262M	ENST00000262803	NM_002911.3	262	atC/atG																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858759	9858759	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	37	353	0	ENST00000330684.3:c.2642A>C	p.Lys881Thr	p.K881T	ENST00000330684	NM_001134407.1	881	aAg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0069195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	83	550	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482537	56482537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	195	381	0	ENST00000267101.3:c.994G>A	p.Glu332Lys	p.E332K	ENST00000267101	NM_001982.3	332	Gag/Aag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15938198	15938202	+	frameshift_variant	Frame_Shift_Del	DEL	ATAGG	ATAGG	-			P-0069195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	35	327	0	ENST00000268712.3:c.7012_7016del	p.Pro2338ThrfsTer25	p.P2338Tfs*25	ENST00000268712	NM_006311.3	2338	CCTATa/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0069368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	52	419	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0069368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	12	294	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630085	67630085	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	12	269	0	ENST00000272342.5:c.521G>C	p.Arg174Thr	p.R174T	ENST00000272342	NM_019002.3	174	aGa/aCa																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18272171	18272190	+	frameshift_variant	Frame_Shift_Del	DEL	GCACCTGGGCCGCGTGGCCA	GCACCTGGGCCGCGTGGCCA	C			P-0069368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	55	501	0	ENST00000222254.8:c.681_700delinsC	p.Gln227HisfsTer108	p.Q227Hfs*108	ENST00000222254	NM_005027.3	227	caGCACCTGGGCCGCGTGGCCAgc/caCgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0069404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	8	308	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577514	7577515	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGAT			P-0069680-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	178	405	0	ENST00000269305.4:c.763_766dup	p.Thr256AsnfsTer9	p.T256Nfs*9	ENST00000269305	NM_001126112.2	256	aca/aATCAca																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099329	157099329	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069680-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	381	461	0	ENST00000346085.5:c.266A>G	p.His89Arg	p.H89R	ENST00000346085	NM_020732.3	89	cAt/cGt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440844	52440844	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0069680-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	225	415	0	ENST00000460680.1:c.659+1G>A		p.X220_splice	ENST00000460680	NM_004656.3	220																																																																																
TAP1	6890	MSKCC	GRCh37	6	32815370	32815370	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069680-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	52	384	0	ENST00000354258.4:c.2003C>A	p.Thr668Asn	p.T668N	ENST00000354258	NM_000593.5	668	aCt/aAt																																																																															
POT1	25913	MSKCC	GRCh37	7	124499124	124499125	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0069680-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	35	282	0	ENST00000357628.3:c.588dup	p.Ile198AsnfsTer7	p.I198Nfs*7	ENST00000357628	NM_015450.2	196	-/C																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871053	12871053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069680-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	585	470	0	ENST00000228872.4:c.280C>A	p.Pro94Thr	p.P94T	ENST00000228872	NM_004064.3	94	Ccc/Acc																																																																															
LATS1	9113	MSKCC	GRCh37	6	149982905	149982905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069680-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	168	374	0	ENST00000253339.5:c.3353C>A	p.Thr1118Lys	p.T1118K	ENST00000253339		1118	aCa/aAa																																																																															
NF2	4771	MSKCC	GRCh37	22	30057312	30057312	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069680-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	66	404	0	ENST00000338641.4:c.794C>G	p.Ser265Trp	p.S265W	ENST00000338641	NM_000268.3	265	tCg/tGg																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023055	33023055	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069680-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	93	477	0	ENST00000300177.4:c.164C>G	p.Ser55Cys	p.S55C	ENST00000300177	NM_001191322.1	55	tCc/tGc																																																																															
BTK	695	MSKCC	GRCh37	X	100604887	100604887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069680-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	56	292	0	ENST00000308731.7:c.1966G>A	p.Asp656Asn	p.D656N	ENST00000308731	NM_000061.2	656	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0069973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	100	318	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
SRC	6714	MSKCC	GRCh37	20	36012632	36012632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	71	311	0	ENST00000358208.4:c.76G>A	p.Gly26Ser	p.G26S	ENST00000358208		26	Ggc/Agc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538982	187538982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	122	362	0	ENST00000441802.2:c.8758G>A	p.Ala2920Thr	p.A2920T	ENST00000441802	NM_005245.3	2920	Gcc/Acc																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612819	228612819	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761689329		P-0069973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	108	462	0	ENST00000366696.1:c.208C>T	p.Arg70Trp	p.R70W	ENST00000366696	NM_003493.2	70	Cgg/Tgg																																																																															
KDR	3791	MSKCC	GRCh37	4	55955921	55955921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	30	319	0	ENST00000263923.4:c.3241G>T	p.Val1081Leu	p.V1081L	ENST00000263923	NM_002253.2	1081	Gtg/Ttg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123191744	123191744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	20	253	0	ENST00000218089.9:c.1333G>A	p.Asp445Asn	p.D445N	ENST00000218089	NM_001042749.1	445	Gat/Aat																																																																															
NADK	65220	MSKCC	GRCh37	1	1690587	1690587	+	intron_variant	Intron	SNP	C	C	A			P-0069973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	76	287	0	ENST00000341426.5:c.264-1838G>T		p.*88*	ENST00000341426	NM_023018.4																																																																																	
SH2D1A	4068	MSKCC	GRCh37	X	123480596	123480596	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	32	329	0	ENST00000371139.4:c.104A>T	p.Glu35Val	p.E35V	ENST00000371139	NM_001114937.2	35	gAg/gTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245292	53245292	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	64	339	0	ENST00000375401.3:c.745G>T	p.Gly249Cys	p.G249C	ENST00000375401	NM_004187.3	249	Ggc/Tgc																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56772500	56772500	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	46	325	0	ENST00000337432.4:c.354G>T	p.Met118Ile	p.M118I	ENST00000337432	NM_058216.2	118	atG/atT																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981801	70981801	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	29	362	0	ENST00000276594.2:c.295C>A	p.Pro99Thr	p.P99T	ENST00000276594	NM_024504.3	99	Cca/Aca																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239504	31239504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	99	432	0	ENST00000376228.5:c.215G>T	p.Arg72Leu	p.R72L	ENST00000376228	NM_002117.5	72	cGg/cTg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243809317	243809317	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	22	293	0	ENST00000263826.5:c.307C>T	p.Gln103Ter	p.Q103*	ENST00000263826	NM_005465.4	103	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992447	72992447	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	38	360	0	ENST00000268489.5:c.1598C>G	p.Ser533Cys	p.S533C	ENST00000268489	NM_006885.3	533	tCc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0070059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	130	486	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0070059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	23	201	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
EP300	2033	MSKCC	GRCh37	22	41533736	41533736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1046073854		P-0070059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	37	384	0	ENST00000263253.7:c.1702C>T	p.Arg568Trp	p.R568W	ENST00000263253	NM_001429.3	568	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55224280	55224280	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753466844		P-0070059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	38	440	0	ENST00000275493.2:c.1061C>T	p.Thr354Met	p.T354M	ENST00000275493	NM_005228.3	354	aCg/aTg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134672	41134672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	120	480	0	ENST00000379561.5:c.956C>T	p.Ser319Leu	p.S319L	ENST00000379561	NM_002015.3	319	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0070121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			671	65	409	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55233009	55233009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			632	31	0	0	ENST00000275493.2:c.1759G>A	p.Asp587Asn	p.D587N	ENST00000275493	NM_005228.3	587	Gac/Aac																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140165	50140165	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			605	98	430	1	ENST00000246792.3:c.260A>T	p.Gln87Leu	p.Q87L	ENST00000246792	NM_006270.3	87	cAg/cTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046717	180046717	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			574	38	468	0	ENST00000261937.6:c.2595C>A	p.Phe865Leu	p.F865L	ENST00000261937	NM_182925.4	865	ttC/ttA																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032546	47032546	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			544	61	315	0	ENST00000329236.7:c.221C>A	p.Ser74Ter	p.S74*	ENST00000329236	NM_001204466.1	74	tCg/tAg																																																																															
NF1	4763	MSKCC	GRCh37	17	29585447	29585447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			507	33	291	0	ENST00000358273.4:c.4259C>T	p.Ser1420Leu	p.S1420L	ENST00000358273	NM_001042492.2	1420	tCa/tTa																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15836763	15836763	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0070121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			349	20	215	0	ENST00000307771.7:c.825G>C	p.Gln275His	p.Q275H	ENST00000307771	NM_005089.3	275	caG/caC																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066465	94066465	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			495	53	352	0	ENST00000369303.4:c.1294G>C	p.Ala432Pro	p.A432P	ENST00000369303	NM_004440.3	432	Gct/Cct																																																																															
ROS1	6098	MSKCC	GRCh37	6	117631410	117631410	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			357	54	228	0	ENST00000368508.3:c.6268A>C	p.Lys2090Gln	p.K2090Q	ENST00000368508	NM_002944.2	2090	Aaa/Caa																																																																															
ATRX	546	MSKCC	GRCh37	X	76931794	76931794	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0070121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			402	25	325	0	ENST00000373344.5:c.3737-1G>T		p.X1246_splice	ENST00000373344	NM_000489.3	1246																																																																																
MEN1	4221	MSKCC	GRCh37	11	64577431	64577431	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			636	72	331	0	ENST00000337652.1:c.151A>T	p.Asn51Tyr	p.N51Y	ENST00000337652	NM_130803.2	51	Aac/Tac																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986982	36986982	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	34	282	0	ENST00000354822.5:c.707A>C	p.Lys236Thr	p.K236T	ENST00000354822	NM_001079668.2	236	aAg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0070197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	313	488	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0070197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	154	350	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	279	398	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955130	17955130	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs565783591		P-0070197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	135	453	1	ENST00000458235.1:c.97C>T	p.Arg33Trp	p.R33W	ENST00000458235	NM_000215.3	33	Cgg/Tgg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134018	41134018	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144016210		P-0070197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	458	566	0	ENST00000379561.5:c.1610G>A	p.Arg537His	p.R537H	ENST00000379561	NM_002015.3	537	cGt/cAt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933560	36933560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	344	592	3	ENST00000361632.4:c.1727C>T	p.Ala576Val	p.A576V	ENST00000361632		576	gCc/gTc																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96930978	96930978	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1281039889		P-0070197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	260	478	0	ENST00000258439.3:c.142C>T	p.Leu48Phe	p.L48F	ENST00000258439	NM_001193304.2	48	Ctc/Ttc																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858296	27858296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1105	110	598	0	ENST00000359303.2:c.275C>T	p.Ala92Val	p.A92V	ENST00000359303	NM_003535.2	92	gCg/gTg																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230492702	230492702	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	54	488	0	ENST00000525115.1:c.490C>A	p.Gln164Lys	p.Q164K	ENST00000525115		164	Cag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0070629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	132	383	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs397517199		P-0070629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	96	275	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233390	69233390	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	126	456	0	ENST00000462284.1:c.1255G>C	p.Glu419Gln	p.E419Q	ENST00000462284	NM_002392.5	419	Gag/Cag																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798154	45798154	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377639760		P-0070629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	98	526	1	ENST00000372115.3:c.655G>A	p.Gly219Ser	p.G219S	ENST00000372115	NM_001048171.1	219	Ggt/Agt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741490	17741490	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	161	381	0	ENST00000250003.3:c.161G>C	p.Gly54Ala	p.G54A	ENST00000250003	NM_002478.4	54	gGc/gCc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62322294	62322294	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	C			P-0070629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	79	424	0	ENST00000482936.1:c.2550G>C	p.Glu850Asp	p.E850D	ENST00000482936		850	gaG/gaC																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755707	57755707	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	126	392	0	ENST00000274289.3:c.80G>C	p.Gly27Ala	p.G27A	ENST00000274289	NM_006622.3	27	gGa/gCa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138201207	138201207	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0070629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	124	392	0	ENST00000237289.4:c.1907-1G>C		p.X636_splice	ENST00000237289	NM_001270507.1	636																																																																																
ESR1	2099	MSKCC	GRCh37	6	152419745	152420067	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGAAGAAAGAAAGATTGCTAAGTGTCTTTGGAGTTCCTCTTCCTTCCCCTTCTAGGGATTTCAGCACTCCTGGGGCTCGGGTTGGCTCTAAAGTAGTCCTTTCTGTGTCTTCCCACCTACAGTAACAAAGGCATGGAGCATCTGTACAGCATGAAGTGCAAGAACGTGGTGCCCCTCTATGACCTGCTGCTGGAGATGCTGGACGCCCACCGCCTACATGCGCCCACTAGCCGTGGAGGGGCATCCGTGGAGGAGACGGACCAAAGCCACTTGGCCACTGCGGGCTCTACTTCATCGCATTCCTTGCAAAAGTATTACATCAC	GGAAGAAAGAAAGATTGCTAAGTGTCTTTGGAGTTCCTCTTCCTTCCCCTTCTAGGGATTTCAGCACTCCTGGGGCTCGGGTTGGCTCTAAAGTAGTCCTTTCTGTGTCTTCCCACCTACAGTAACAAAGGCATGGAGCATCTGTACAGCATGAAGTGCAAGAACGTGGTGCCCCTCTATGACCTGCTGCTGGAGATGCTGGACGCCCACCGCCTACATGCGCCCACTAGCCGTGGAGGGGCATCCGTGGAGGAGACGGACCAAAGCCACTTGGCCACTGCGGGCTCTACTTCATCGCATTCCTTGCAAAAGTATTACATCAC	-			P-0070629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	35	118	0	ENST00000206249.3:c.1554-120_1756del		p.X518_splice	ENST00000206249	NM_000125.3	518																																																																																
NADK	65220	MSKCC	GRCh37	1	1696653	1696738	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTCCCAGTTGTACCTGAACTCCTTGGTGCTCCCCAGGGCGGGCGAGGCAGACAGGCTGCGAGACTTGGCCCGGCCCCGGATGGGG	CCTCCCAGTTGTACCTGAACTCCTTGGTGCTCCCCAGGGCGGGCGAGGCAGACAGGCTGCGAGACTTGGCCCGGCCCCGGATGGGG	-			P-0070629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	45	385	0	ENST00000341426.5:c.108_179+14del		p.X36_splice	ENST00000341426	NM_023018.4	36																																																																																
SPRED1	161742	MSKCC	GRCh37	15	38591689	38591689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	38	344	0	ENST00000299084.4:c.148C>A	p.Gln50Lys	p.Q50K	ENST00000299084	NM_152594.2	50	Cag/Aag																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2119524	2119524	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	107	284	0	ENST00000349721.2:c.3751G>C	p.Asp1251His	p.D1251H	ENST00000349721	NM_003070.3	1251	Gac/Cac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230845	66230848	+	missense_variant	Missense_Mutation	ONP	AGGG	AGGG	TGGT			P-0070629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	103	361	0	ENST00000273854.3:c.2123_2126delinsACCA	p.Thr708_Leu709delinsAsnHis	p.T708_L709delinsNH	ENST00000273854	NM_004439.5	708	aCCCTt/aACCAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417596	139417596	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372660483		P-0070771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	167	492	0	ENST00000277541.6:c.448G>A	p.Ala150Thr	p.A150T	ENST00000277541	NM_017617.3	150	Gcc/Acc																																																																															
RB1	5925	MSKCC	GRCh37	13	49033967	49033967	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs1131690865		P-0070771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	180	375	0	ENST00000267163.4:c.2104C>T	p.Gln702Ter	p.Q702*	ENST00000267163	NM_000321.2	702	Caa/Taa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65300929	65301138	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTATGTGAAATTCAGCTTCAGAAAACTATTTTACAAGGACTTCACTGCATCATTTCCTCGCTCTCCCCTCTACCCATTGCTGGACAACTCAAGCTGCGAAAACATAATAGAAATGGAGTGTTATTACTGTGACGTGGCCCATAGATACCTCATCTGGACAGTTAGGTGGGCACGGCAGGCGTTTTCCTTCTTTTAACGTATTCACAAG	TCTTATGTGAAATTCAGCTTCAGAAAACTATTTTACAAGGACTTCACTGCATCATTTCCTCGCTCTCCCCTCTACCCATTGCTGGACAACTCAAGCTGCGAAAACATAATAGAAATGGAGTGTTATTACTGTGACGTGGCCCATAGATACCTCATCTGGACAGTTAGGTGGGCACGGCAGGCGTTTTCCTTCTTTTAACGTATTCACAAG	-			P-0070771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	13	94	0	ENST00000342505.4:c.3310_3369+150del		p.X1104_splice	ENST00000342505	NM_002227.2	1104																																																																																
TP53	7157	MSKCC	GRCh37	17	7577067	7577068	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0070771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	233	546	0	ENST00000269305.4:c.870dup	p.Lys291GlnfsTer15	p.K291Qfs*15	ENST00000269305	NM_001126112.2	290	-/C																																																																															
TET1	80312	MSKCC	GRCh37	10	70446235	70446236	+	missense_variant	Missense_Mutation	DNP	GG	GG	TC			P-0070771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	196	506	0	ENST00000373644.4:c.5175_5176delinsTC	p.Met1725_Glu1726delinsIleGln	p.M1725_E1726delinsIQ	ENST00000373644	NM_030625.2	1725	atGGaa/atTCaa																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0070813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	135	375	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519991		P-0070813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	117	577	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189936	66189936	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0070813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	82	299	0	ENST00000273854.3:c.3010G>T	p.Asp1004Tyr	p.D1004Y	ENST00000273854	NM_004439.5	1004	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	47	582	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																															
ALK	238	MSKCC	GRCh37	2	29451888	29451888	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	94	441	0	ENST00000389048.3:c.2677G>T	p.Gly893Ter	p.G893*	ENST00000389048	NM_004304.4	893	Gga/Tga																																																																															
MAX	4149	MSKCC	GRCh37	14	65560441	65560441	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	124	381	0	ENST00000358664.4:c.156del	p.Leu53SerfsTer12	p.L53Sfs*12	ENST00000358664	NM_002382.4	52	tcA/tc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128044448	128044448	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	75	536	0	ENST00000285398.2:c.1173del	p.Phe392SerfsTer47	p.F392Sfs*47	ENST00000285398	NM_000122.1	391	cgG/cg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923504	9923504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	85	381	0	ENST00000330684.3:c.1783C>A	p.His595Asn	p.H595N	ENST00000330684	NM_001134407.1	595	Cat/Aat																																																																															
FLT3	2322	MSKCC	GRCh37	13	28636176	28636176	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	88	462	0	ENST00000241453.7:c.196G>C	p.Ala66Pro	p.A66P	ENST00000241453	NM_004119.2	66	Gcg/Ccg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138139	2138139	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0070813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	47	586	0	ENST00000219476.3:c.5159A>T	p.Asn1720Ile	p.N1720I	ENST00000219476	NM_000548.3	1720	aAt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0070907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	241	476	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600378	10600378	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	181	522	0	ENST00000171111.5:c.1477G>C	p.Glu493Gln	p.E493Q	ENST00000171111	NM_203500.1	493	Gag/Cag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47158246	47158246	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0070907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	137	306	0	ENST00000409792.3:c.4455-2A>T		p.X1485_splice	ENST00000409792	NM_014159.6	1485																																																																																
KDM5A	5927	MSKCC	GRCh37	12	417120	417120	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	161	519	0	ENST00000399788.2:c.3430C>G	p.Leu1144Val	p.L1144V	ENST00000399788	NM_001042603.1	1144	Ctc/Gtc																																																																															
MDM4	4194	MSKCC	GRCh37	1	204499857	204499857	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	121	440	0	ENST00000367182.3:c.199G>C	p.Asp67His	p.D67H	ENST00000367182	NM_001278516.1	67	Gat/Cat																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023218	31023218	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	186	531	0	ENST00000375687.4:c.2703C>G	p.Ile901Met	p.I901M	ENST00000375687	NM_015338.5	901	atC/atG																																																																															
STAG2	10735	MSKCC	GRCh37	X	123217344	123217344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	38	180	0	ENST00000218089.9:c.2998C>G	p.Leu1000Val	p.L1000V	ENST00000218089	NM_001042749.1	1000	Ctt/Gtt																																																																															
ATR	545	MSKCC	GRCh37	3	142266571	142266571	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	93	425	0	ENST00000350721.4:c.3353T>A	p.Leu1118Gln	p.L1118Q	ENST00000350721	NM_001184.3	1118	cTg/cAg																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51504581	51504581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	46	441	0	ENST00000260433.2:c.1199G>A	p.Arg400Lys	p.R400K	ENST00000260433		400	aGg/aAg																																																																															
TET1	80312	MSKCC	GRCh37	10	70446350	70446350	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	54	516	0	ENST00000373644.4:c.5290G>T	p.Glu1764Ter	p.E1764*	ENST00000373644	NM_030625.2	1764	Gag/Tag																																																																															
MYC	4609	MSKCC	GRCh37	8	128751005	128751005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	103	512	0	ENST00000377970.2:c.542G>T	p.Arg181Leu	p.R181L	ENST00000377970	NM_002467.4	181	cGc/cTc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245880	5245880	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	67	540	0	ENST00000357368.4:c.895G>C	p.Glu299Gln	p.E299Q	ENST00000357368	NM_002850.3	299	Gaa/Caa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627699	37627699	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0071007-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	179	311	0	ENST00000447079.4:c.1614del	p.Leu539TyrfsTer71	p.L539Yfs*71	ENST00000447079	NM_015083.1	538	ccT/cc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650849	37650849	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071007-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	254	423	0	ENST00000447079.4:c.2321A>T	p.Glu774Val	p.E774V	ENST00000447079	NM_015083.1	774	gAa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782329		P-0071122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	315	391	0	ENST00000269305.4:c.746G>C	p.Arg249Thr	p.R249T	ENST00000269305	NM_001126112.2	249	aGg/aCg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23649275	23649275	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs730881897		P-0071122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	32	246	0	ENST00000261584.4:c.109-2A>G		p.X37_splice	ENST00000261584	NM_024675.3	37																																																																																
CYSLTR2	57105	MSKCC	GRCh37	13	49281339	49281339	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	312	371	0	ENST00000282018.3:c.386T>A	p.Leu129Gln	p.L129Q	ENST00000282018	NM_020377.2	129	cTg/cAg																																																																															
AKT2	208	MSKCC	GRCh37	19	40741237	40741237	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	253	360	0	ENST00000392038.2:c.1196A>T	p.Asp399Val	p.D399V	ENST00000392038	NM_001626.4	399	gAt/gTt																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626772	14626772	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0071122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	247	321	0	ENST00000254322.2:c.1003G>T	p.Glu335Ter	p.E335*	ENST00000254322	NM_006145.1	335	Gag/Tag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936210	71936210	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0071122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			728	248	484	0	ENST00000298229.2:c.182T>A	p.Leu61Gln	p.L61Q	ENST00000298229	NM_001567.3	61	cTg/cAg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681000	117681000	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0071122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	49	257	0	ENST00000368508.3:c.3620T>G	p.Leu1207Arg	p.L1207R	ENST00000368508	NM_002944.2	1207	cTg/cGg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181431048	181431048	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	366	459	0	ENST00000325404.1:c.900C>G	p.Ser300Arg	p.S300R	ENST00000325404	NM_003106.3	300	agC/agG																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944842	31944842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			951	89	470	1	ENST00000340398.3:c.259G>A	p.Ala87Thr	p.A87T	ENST00000340398	NM_001013699.2	87	Gca/Aca																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81962167	81962167	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	171	272	0	ENST00000359376.3:c.2519T>C	p.Ile840Thr	p.I840T	ENST00000359376	NM_002661.3	840	aTt/aCt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32181950	32181950	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	210	403	0	ENST00000375023.3:c.2104del	p.His702MetfsTer29	p.H702Mfs*29	ENST00000375023	NM_004557.3	702	Cat/at																																																																															
RASA1	5921	MSKCC	GRCh37	5	86674266	86674266	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	144	274	0	ENST00000274376.6:c.2398C>T	p.Gln800Ter	p.Q800*	ENST00000274376	NM_002890.2	800	Cag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163731	47163731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	243	214	1	ENST00000409792.3:c.2395G>T	p.Asp799Tyr	p.D799Y	ENST00000409792	NM_014159.6	799	Gat/Tat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097704	27097704	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			893	152	465	0	ENST00000324856.7:c.3293A>T	p.Gln1098Leu	p.Q1098L	ENST00000324856	NM_006015.4	1098	cAg/cTg																																																																															
MYC	4609	MSKCC	GRCh37	8	128750729	128750729	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1107	982	441	0	ENST00000377970.2:c.266A>G	p.Tyr89Cys	p.Y89C	ENST00000377970	NM_002467.4	89	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0071168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	100	282	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112174559	112174559	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	76	347	0	ENST00000257430.4:c.3268C>T	p.Gln1090Ter	p.Q1090*	ENST00000257430	NM_000038.5	1090	Caa/Taa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5050689	5050689	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765494796		P-0071168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	40	230	0	ENST00000381652.3:c.472C>T	p.Arg158Trp	p.R158W	ENST00000381652	NM_004972.3	158	Cgg/Tgg																																																																															
INSR	3643	MSKCC	GRCh37	19	7267523	7267523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	139	345	0	ENST00000302850.5:c.485G>A	p.Arg162His	p.R162H	ENST00000302850	NM_000208.2	162	cGt/cAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0071268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	123	296	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984337	201984338	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0071268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	42	317	0	ENST00000359651.3:c.1003dup	p.Tyr335LeufsTer136	p.Y335Lfs*136	ENST00000359651		334	-/T																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604715	48604715	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	42	353	0	ENST00000342988.3:c.1537T>A	p.Tyr513Asn	p.Y513N	ENST00000342988	NM_005359.5	513	Tac/Aac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141475	11141475	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	42	357	0	ENST00000344626.4:c.3452T>A	p.Ile1151Asn	p.I1151N	ENST00000344626	NM_003072.3	1151	aTc/aAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0071350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	430	403	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0071350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			54	218	536	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628376	187628376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	61	495	0	ENST00000441802.2:c.2606C>T	p.Ser869Leu	p.S869L	ENST00000441802	NM_005245.3	869	tCa/tTa																																																																															
EZH2	2146	MSKCC	GRCh37	7	148507497	148507497	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0071350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	32	314	0	ENST00000320356.2:c.1957C>T	p.Gln653Ter	p.Q653*	ENST00000320356	NM_004456.4	653	Caa/Taa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2972178	2972178	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	36	319	0	ENST00000396946.4:c.1561G>C	p.Asp521His	p.D521H	ENST00000396946	NM_032415.4	521	Gat/Cat																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182683497	182683497	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	54	330	0	ENST00000292782.4:c.48G>C	p.Met16Ile	p.M16I	ENST00000292782	NM_020640.2	16	atG/atC																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600417	10600417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071389-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			719	54	347	0	ENST00000171111.5:c.1438G>T	p.Gly480Trp	p.G480W	ENST00000171111	NM_203500.1	480	Ggg/Tgg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039888	47039888	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071389-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			224	22	120	0	ENST00000329236.7:c.997C>T	p.Gln333Ter	p.Q333*	ENST00000329236	NM_001204466.1	333	Cag/Tag																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422055	81422055	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071389-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			562	38	286	0	ENST00000298171.2:c.31C>A	p.Leu11Met	p.L11M	ENST00000298171	NM_000369.2	11	Ctg/Atg																																																																															
STK11	6794	MSKCC	GRCh37	19	1219520	1220468	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCCCAAGTTTTTTTGTTTTTTTGTTTTTTTGTGTTTTTTTTCGAGATGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAATGGTGCGATCTCGGCTCACTGCAAGCTCCGCCTCCGAGGTTCACGCCATTCTTCTGCCTCAGCTTCCCGAGTAGCTGGGATTACAGGCGCCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCAAACTCCTGACCTCGTGATCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCTACCACGCCCGGCCTTGTAAAGGCCCAAGTTTTTAAAAACAGTTTTGGGGTCCCCCATGTGTGGCATCCACAGGCAGGGCTGCTGCCAACCTCCCGCCTCCATCTTTGCTGGGCCTGCTGCCTGAGGCCAGTGGCCTGCTTCCAGCCCATCGCTGGCAGCCGCCTGCCCTGACCAGATCTCCTGGATGCAGGTCTGTGGCCTCAGAGTCAGGGCCCCTTGCTGCTGCAGGACCACAGGGGCAGGGAGGGGCCTGCTGTTCCAGCAAGACTTTGGGGTGCAGCCGGCCTGTGGCCCACAGGAAAATGAGACCTGTGGACATCCGGGGCCCTGCCAGACGTGGCTCGGCCGGACGAGGGTGGCCACTGCAGGCGCAGGTGTGGCTCCCTGCTGGACCTAGCCTTTCCTCTGTCCTGTGTGCCTGGACTTCTGTGACTTCCCAGCTGGGCCTGTGGTGTTTGGGAGGCTCCCAGGCAGCTGCAAAGGGGACCCCTGTGAGGGGCAGGGAGGCCTCGGCCCCAGGACGGGTGTGTGCTGCCCGCAGGTACTTCTGTCAGCTGATTGACGGCCTGGAGTACCTGCATAGCCAGGGCATTGTGCACAAGGACATCAAGCCGGGGAACCTGCTGCTCACCACCGGT	GGCCCAAGTTTTTTTGTTTTTTTGTTTTTTTGTGTTTTTTTTCGAGATGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAATGGTGCGATCTCGGCTCACTGCAAGCTCCGCCTCCGAGGTTCACGCCATTCTTCTGCCTCAGCTTCCCGAGTAGCTGGGATTACAGGCGCCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCAAACTCCTGACCTCGTGATCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCTACCACGCCCGGCCTTGTAAAGGCCCAAGTTTTTAAAAACAGTTTTGGGGTCCCCCATGTGTGGCATCCACAGGCAGGGCTGCTGCCAACCTCCCGCCTCCATCTTTGCTGGGCCTGCTGCCTGAGGCCAGTGGCCTGCTTCCAGCCCATCGCTGGCAGCCGCCTGCCCTGACCAGATCTCCTGGATGCAGGTCTGTGGCCTCAGAGTCAGGGCCCCTTGCTGCTGCAGGACCACAGGGGCAGGGAGGGGCCTGCTGTTCCAGCAAGACTTTGGGGTGCAGCCGGCCTGTGGCCCACAGGAAAATGAGACCTGTGGACATCCGGGGCCCTGCCAGACGTGGCTCGGCCGGACGAGGGTGGCCACTGCAGGCGCAGGTGTGGCTCCCTGCTGGACCTAGCCTTTCCTCTGTCCTGTGTGCCTGGACTTCTGTGACTTCCCAGCTGGGCCTGTGGTGTTTGGGAGGCTCCCAGGCAGCTGCAAAGGGGACCCCTGTGAGGGGCAGGGAGGCCTCGGCCCCAGGACGGGTGTGTGCTGCCCGCAGGTACTTCTGTCAGCTGATTGACGGCCTGGAGTACCTGCATAGCCAGGGCATTGTGCACAAGGACATCAAGCCGGGGAACCTGCTGCTCACCACCGGT	-			P-0071389-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			234	23	127	0	ENST00000326873.7:c.464+111_564del		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
TAP2	6891	MSKCC	GRCh37	6	32800582	32800582	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs770542409		P-0071389-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			743	45	316	0	ENST00000374899.4:c.965A>G	p.Gln322Arg	p.Q322R	ENST00000374899	NM_018833.2	322	cAg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0071454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	111	318	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117622160	117622160	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs564889461		P-0071454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	31	201	0	ENST00000368508.3:c.6710G>A	p.Gly2237Glu	p.G2237E	ENST00000368508	NM_002944.2	2237	gGa/gAa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6036950	6036995	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TACTTACTAAAAAAGATTATGCAGAGCATCGGAACAGCTCAAACCG	TACTTACTAAAAAAGATTATGCAGAGCATCGGAACAGCTCAAACCG	-			P-0071454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	26	156	0	ENST00000265849.7:c.765_803+7del		p.X255_splice	ENST00000265849	NM_000535.5	255																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134884901	134884901	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	135	206	0	ENST00000398015.3:c.1677C>G	p.Ile559Met	p.I559M	ENST00000398015	NM_004441.4	559	atC/atG																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983969	15983969	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0071454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	121	286	0	ENST00000268712.3:c.3250G>T	p.Gly1084Ter	p.G1084*	ENST00000268712	NM_006311.3	1084	Gga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	71	477	0	ENST00000269305.4:c.406C>G	p.Gln136Glu	p.Q136E	ENST00000269305	NM_001126112.2	136	Caa/Gaa																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204760	128204760	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	68	431	0	ENST00000341105.2:c.681T>A	p.Ser227Arg	p.S227R	ENST00000341105	NM_032638.4	227	agT/agA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591928	48591936	+	inframe_deletion	In_Frame_Del	DEL	TGGGTCAAC	TGGGTCAAC	-			P-0071510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	64	377	0	ENST00000342988.3:c.1092_1100del	p.Leu364_Leu367delinsPhe	p.L364_L367delinsF	ENST00000342988	NM_005359.5	364	tTGGGTCAACtc/ttc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259275	36259275	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	33	410	0	ENST00000300305.3:c.216G>C	p.Arg72Ser	p.R72S	ENST00000300305		72	agG/agC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0071558-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			69	43	435	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0071558-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			83	18	253	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175391	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0071558-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			94	24	386	0	ENST00000257430.4:c.4100dup	p.Thr1368AspfsTer7	p.T1368Dfs*7	ENST00000257430	NM_000038.5	1367	cag/cAag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628317	187628317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071558-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	45	487	5	ENST00000441802.2:c.2665C>A	p.His889Asn	p.H889N	ENST00000441802	NM_005245.3	889	Cat/Aat																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006002	22006002	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	75	543	0	ENST00000276925.6:c.401C>G	p.Thr134Arg	p.T134R	ENST00000276925	NM_004936.3	134	aCa/aGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540652		P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	124	414	0	ENST00000269305.4:c.743G>C	p.Arg248Pro	p.R248P	ENST00000269305	NM_001126112.2	248	cGg/cCg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8331710	8331710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			738	58	411	0	ENST00000356435.5:c.5406G>T	p.Gln1802His	p.Q1802H	ENST00000356435		1802	caG/caT																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317461	1317461	+	downstream_gene_variant	3'Flank	SNP	C	C	A	rs781459586		P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	71	449	0				ENST00000381566																																																																																		
GATA3	2625	MSKCC	GRCh37	10	8100429	8100429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			709	70	626	0	ENST00000346208.3:c.403C>A	p.Pro135Thr	p.P135T	ENST00000346208		135	Ccg/Acg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18719923	18719923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	119	277	0	ENST00000266497.5:c.3820C>T	p.His1274Tyr	p.H1274Y	ENST00000266497		1274	Cac/Tac																																																																															
KIT	3815	MSKCC	GRCh37	4	55593607	55593607	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	166	453	0	ENST00000288135.5:c.1673A>G	p.Lys558Arg	p.K558R	ENST00000288135	NM_000222.2	558	aAg/aGg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522357	176522357	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34158682		P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	29	433	0	ENST00000292408.4:c.1546G>A	p.Asp516Asn	p.D516N	ENST00000292408	NM_213647.1	516	Gac/Aac																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632585	3632585	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs780678810		P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	138	493	0	ENST00000294008.3:c.5263G>T	p.Ala1755Ser	p.A1755S	ENST00000294008	NM_032444.2	1755	Gcg/Tcg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395745	45395745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	156	413	0	ENST00000262160.6:c.389G>T	p.Arg130Leu	p.R130L	ENST00000262160	NM_005901.5	130	cGa/cTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484181	8484181	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1025234387		P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	60	453	0	ENST00000356435.5:c.3351G>T	p.Lys1117Asn	p.K1117N	ENST00000356435		1117	aaG/aaT																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98221975	98221975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	217	420	0	ENST00000331920.6:c.2794G>T	p.Val932Phe	p.V932F	ENST00000331920	NM_000264.3	932	Gtc/Ttc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78858949	78858949	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	65	476	0	ENST00000306801.3:c.1983+1G>T		p.X661_splice	ENST00000306801	NM_020761.2	661																																																																																
LATS2	26524	MSKCC	GRCh37	13	21562051	21562051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	146	471	0	ENST00000382592.4:c.1868G>T	p.Arg623Leu	p.R623L	ENST00000382592	NM_014572.2	623	cGg/cTg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138197171	138197171	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751503246		P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	99	499	0	ENST00000237289.4:c.673G>A	p.Ala225Thr	p.A225T	ENST00000237289	NM_001270507.1	225	Gcc/Acc																																																																															
CIC	23152	MSKCC	GRCh37	19	42796730	42796730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	68	543	0	ENST00000575354.2:c.3188C>A	p.Pro1063Gln	p.P1063Q	ENST00000575354	NM_015125.3	1063	cCa/cAa																																																																															
WT1	7490	MSKCC	GRCh37	11	32456275	32456275	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	60	450	0	ENST00000332351.3:c.617T>A	p.Leu206His	p.L206H	ENST00000332351	NM_024426.4	206	cTc/cAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521297	187521297	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	71	424	0	ENST00000441802.2:c.11858G>C	p.Gly3953Ala	p.G3953A	ENST00000441802	NM_005245.3	3953	gGt/gCt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630521	187630521	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	82	528	0	ENST00000441802.2:c.461A>T	p.Tyr154Phe	p.Y154F	ENST00000441802	NM_005245.3	154	tAc/tTc																																																																															
MGA	23269	MSKCC	GRCh37	15	42054551	42054551	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	88	335	0	ENST00000219905.7:c.7735C>T	p.Gln2579Ter	p.Q2579*	ENST00000219905	NM_001164273.1	2579	Cag/Tag																																																																															
RET	5979	MSKCC	GRCh37	10	43614977	43614977	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	41	429	0	ENST00000355710.3:c.2393-2A>T		p.X798_splice	ENST00000355710	NM_020975.4	798																																																																																
SUZ12	23512	MSKCC	GRCh37	17	30325847	30325847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	92	354	0	ENST00000322652.5:c.2045G>T	p.Arg682Leu	p.R682L	ENST00000322652	NM_015355.2	682	cGt/cTt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535293	66535293	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	100	406	0	ENST00000273854.3:c.168C>A	p.Ser56Arg	p.S56R	ENST00000273854	NM_004439.5	56	agC/agA																																																																															
KDR	3791	MSKCC	GRCh37	4	55946163	55946163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	137	446	0	ENST00000263923.4:c.4016C>T	p.Thr1339Ile	p.T1339I	ENST00000263923	NM_002253.2	1339	aCa/aTa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739660	41739660	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	67	380	0	ENST00000242208.4:c.313G>C	p.Asp105His	p.D105H	ENST00000242208	NM_002192.2	105	Gat/Cat																																																																															
ROS1	6098	MSKCC	GRCh37	6	117708163	117708163	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	88	307	0	ENST00000368508.3:c.2015-1G>T		p.X672_splice	ENST00000368508	NM_002944.2	672																																																																																
GATA3	2625	MSKCC	GRCh37	10	8115834	8115834	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			739	94	552	0	ENST00000346208.3:c.1180G>T	p.Ala394Ser	p.A394S	ENST00000346208		394	Gcc/Tcc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55138633	55138633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	111	366	0	ENST00000257290.5:c.1310C>A	p.Ala437Asp	p.A437D	ENST00000257290	NM_006206.4	437	gCt/gAt																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50488355	50488356	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	214	356	0	ENST00000394963.4:c.1269_1269+1delinsTT		p.X423_splice	ENST00000394963	NM_003076.4	423																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151873276	151873276	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	60	338	0	ENST00000262189.6:c.9262G>T	p.Asp3088Tyr	p.D3088Y	ENST00000262189	NM_170606.2	3088	Gat/Tat																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435146	110435146	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	138	518	0	ENST00000375856.3:c.3255A>T	p.Gln1085His	p.Q1085H	ENST00000375856	NM_003749.2	1085	caA/caT																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200135	128200135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	85	472	0	ENST00000341105.2:c.1170G>T	p.Lys390Asn	p.K390N	ENST00000341105	NM_032638.4	390	aaG/aaT																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166550	118166550	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	106	523	0	ENST00000369448.3:c.1060A>T	p.Thr354Ser	p.T354S	ENST00000369448	NM_017709.3	354	Acc/Tcc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112424	115112424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	170	517	0	ENST00000257566.3:c.1316C>A	p.Pro439His	p.P439H	ENST00000257566	NM_016569.3	439	cCc/cAc																																																																															
TET1	80312	MSKCC	GRCh37	10	70333890	70333890	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	74	527	0	ENST00000373644.4:c.1795C>G	p.Gln599Glu	p.Q599E	ENST00000373644	NM_030625.2	599	Cag/Gag																																																																															
NF1	4763	MSKCC	GRCh37	17	29653170	29653170	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	154	493	0	ENST00000358273.4:c.5168A>T	p.Gln1723Leu	p.Q1723L	ENST00000358273	NM_001042492.2	1723	cAa/cTa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480310	89480310	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	63	349	0	ENST00000336596.2:c.2147C>G	p.Ala716Gly	p.A716G	ENST00000336596	NM_005233.5	716	gCc/gGc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412381	63412381	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	133	562	0	ENST00000330258.3:c.786G>T	p.Met262Ile	p.M262I	ENST00000330258	NM_152424.3	262	atG/atT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341964	8341964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	264	421	0	ENST00000356435.5:c.4676G>T	p.Arg1559Leu	p.R1559L	ENST00000356435		1559	cGg/cTg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664708	138664708	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	142	343	0	ENST00000330315.3:c.857C>A	p.Pro286His	p.P286H	ENST00000330315	NM_023067.3	286	cCt/cAt																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99823071	99823071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	38	253	0	ENST00000280892.6:c.141G>T	p.Glu47Asp	p.E47D	ENST00000280892	NM_001130678.1	47	gaG/gaT																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589522	69589522	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs757882735		P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	216	713	0	ENST00000168712.1:c.331A>T	p.Thr111Ser	p.T111S	ENST00000168712	NM_002007.2	111	Acc/Tcc																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805523	46805523	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	67	496	0	ENST00000290295.7:c.433G>T	p.Asp145Tyr	p.D145Y	ENST00000290295	NM_006361.5	145	Gac/Tac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788621	3788628	+	frameshift_variant	Frame_Shift_Del	DEL	GGCAACGT	GGCAACGT	-			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	65	345	0	ENST00000262367.5:c.4326_4333del	p.Arg1443ProfsTer7	p.R1443Pfs*7	ENST00000262367	NM_004380.2	1442	ccACGTTGCCtc/cctc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38283679	38283679	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	104	421	0	ENST00000425967.3:c.799T>A	p.Tyr267Asn	p.Y267N	ENST00000425967	NM_001174067.1	267	Tac/Aac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187525068	187525068	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	41	404	0	ENST00000441802.2:c.10612G>T	p.Glu3538Ter	p.E3538*	ENST00000441802	NM_005245.3	3538	Gag/Tag																																																																															
ARAF	369	MSKCC	GRCh37	X	47424451	47424451	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	86	537	0	ENST00000377045.4:c.371G>T	p.Arg124Leu	p.R124L	ENST00000377045	NM_001654.4	124	cGt/cTt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225367713	225367714	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	94	317	0	ENST00000264414.4:c.1453dup	p.Asp485GlyfsTer2	p.D485Gfs*2	ENST00000264414	NM_003590.4	485	gat/gGat																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865557	57865557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	333	606	0	ENST00000228682.2:c.3034G>A	p.Gly1012Ser	p.G1012S	ENST00000228682	NM_005269.2	1012	Ggt/Agt																																																																															
MPL	4352	MSKCC	GRCh37	1	43805752	43805752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	57	418	0	ENST00000372470.3:c.808G>A	p.Gly270Arg	p.G270R	ENST00000372470	NM_005373.2	270	Gga/Aga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374058	118374058	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs782475453		P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	192	441	0	ENST00000534358.1:c.7451A>G	p.Asn2484Ser	p.N2484S	ENST00000534358	NM_005933.3	2484	aAt/aGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831104	72831104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	148	489	0	ENST00000268489.5:c.5477G>T	p.Gly1826Val	p.G1826V	ENST00000268489	NM_006885.3	1826	gGg/gTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540384	187540386	+	missense_variant	Missense_Mutation	ONP	CAG	CAG	AAT			P-0071752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			714	121	504	0	ENST00000441802.2:c.7354_7356delinsATT	p.Leu2452Ile	p.L2452I	ENST00000441802	NM_005245.3	2452	CTG/ATT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577500	7577500	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0071985-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	214	353	0	ENST00000269305.4:c.781del	p.Ser261ValfsTer84	p.S261Vfs*84	ENST00000269305	NM_001126112.2	261	Agt/gt																																																																															
ATRX	546	MSKCC	GRCh37	X	76939369	76939369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071985-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	33	367	0	ENST00000373344.5:c.1379C>T	p.Ser460Leu	p.S460L	ENST00000373344	NM_000489.3	460	tCa/tTa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94163118	94163118	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071985-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	67	305	0	ENST00000323929.3:c.2029C>G	p.Gln677Glu	p.Q677E	ENST00000323929	NM_005591.3	677	Cag/Gag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198285830	198285830	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071985-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	85	338	0	ENST00000335508.6:c.223A>G	p.Ser75Gly	p.S75G	ENST00000335508	NM_012433.2	75	Agt/Ggt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066883	30066883	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1394155854		P-0071985-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	67	348	0	ENST00000331968.5:c.2248C>G	p.Leu750Val	p.L750V	ENST00000331968	NM_002742.2	750	Ctg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	45	288	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790176	40790176	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	36	282	0	ENST00000373198.4:c.2555G>T	p.Gly852Val	p.G852V	ENST00000373198	NM_133170.3	852	gGc/gTc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216782	7216782	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1324992597		P-0072074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	64	398	0	ENST00000380728.2:c.641C>T	p.Ser214Leu	p.S214L	ENST00000380728		214	tCg/tTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509127	106509127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	54	391	0	ENST00000359195.3:c.1121C>A	p.Pro374His	p.P374H	ENST00000359195	NM_002649.2	374	cCt/cAt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509292	106509292	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	46	348	0	ENST00000359195.3:c.1286T>G	p.Leu429Arg	p.L429R	ENST00000359195	NM_002649.2	429	cTg/cGg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430877	78430877	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			661	39	340	0	ENST00000370768.2:c.512del	p.Gly171GlufsTer21	p.G171Efs*21	ENST00000370768	NM_003902.3	171	gGa/ga																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013691	12013691	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0072074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	60	294	0	ENST00000353533.5:c.634-1G>T		p.X212_splice	ENST00000353533	NM_003010.3	212																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3820764	3820765	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0072074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	35	355	0	ENST00000262367.5:c.2686_2687delinsTT	p.Gly896Leu	p.G896L	ENST00000262367	NM_004380.2	896	GGg/TTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9928001	9928001	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	50	311	0	ENST00000330684.3:c.1738A>T	p.Ser580Cys	p.S580C	ENST00000330684	NM_001134407.1	580	Agc/Tgc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867757	45867757	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780519795		P-0072074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	36	342	0	ENST00000391945.4:c.643C>T	p.Pro215Ser	p.P215S	ENST00000391945	NM_000400.3	215	Ccc/Tcc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902164	50902164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	28	317	0	ENST00000440232.2:c.56G>T	p.Arg19Leu	p.R19L	ENST00000440232	NM_002691.3	19	cGt/cTt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100453	8100453	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1321349240		P-0072074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	38	426	0	ENST00000346208.3:c.427G>C	p.Gly143Arg	p.G143R	ENST00000346208		143	Ggg/Cgg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929165	44929165	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	28	150	0	ENST00000377967.4:c.2266del	p.Ala756GlnfsTer18	p.A756Qfs*18	ENST00000377967	NM_021140.2	755	acG/ac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860461	151860461	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0072074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			855	63	457	0	ENST00000262189.6:c.10201A>T	p.Lys3401Ter	p.K3401*	ENST00000262189	NM_170606.2	3401	Aag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974778	21974778	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	26	364	0	ENST00000304494.5:c.49del	p.Ala17ProfsTer9	p.A17Pfs*9	ENST00000304494	NM_000077.4	17	Gcc/cc																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96931038	96931038	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs776127077		P-0072074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	23	220	0	ENST00000258439.3:c.82G>T	p.Glu28Ter	p.E28*	ENST00000258439	NM_001193304.2	28	Gag/Tag																																																																															
BTK	695	MSKCC	GRCh37	X	100611246	100611246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	22	129	0	ENST00000308731.7:c.1360C>T	p.His454Tyr	p.H454Y	ENST00000308731	NM_000061.2	454	Cat/Tat																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880874	134880874	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	30	291	0	ENST00000398015.3:c.1437C>A	p.Phe479Leu	p.F479L	ENST00000398015	NM_004441.4	479	ttC/ttA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023327	27023327	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			378	36	303	0	ENST00000324856.7:c.437del	p.Pro146GlnfsTer86	p.P146Qfs*86	ENST00000324856	NM_006015.4	145	Ccc/cc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			642	59	444	3	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			193	44	145	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
SUFU	51684	MSKCC	GRCh37	10	104356987	104356987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			459	88	368	0	ENST00000369902.3:c.847G>A	p.Glu283Lys	p.E283K	ENST00000369902	NM_016169.3	283	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			545	60	573	1	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43733757	43733757	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			252	23	218	0	ENST00000382044.4:c.3065del	p.Asn1022MetfsTer20	p.N1022Mfs*20	ENST00000382044	NM_001141980.1	1022	aAt/at																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			639	75	558	1	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																															
STAT3	6774	MSKCC	GRCh37	17	40476850	40476850	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			429	47	461	1	ENST00000264657.5:c.1479del	p.Phe493LeufsTer16	p.F493Lfs*16	ENST00000264657	NM_139276.2	493	ttT/tt																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66511578	66511578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			509	58	335	2	ENST00000358598.2:c.38G>A	p.Arg13His	p.R13H	ENST00000358598	NM_212471.2	13	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223967	36223967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			558	75	602	2	ENST00000222270.7:c.6517C>T	p.Arg2173Trp	p.R2173W	ENST00000222270	NM_014727.1	2173	Cgg/Tgg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			609	60	541	2	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
CIC	23152	MSKCC	GRCh37	19	42793472	42793472	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201067032		P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			497	53	519	0	ENST00000575354.2:c.1274G>A	p.Arg425His	p.R425H	ENST00000575354	NM_015125.3	425	cGt/cAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			175	34	195	3	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485766	57485766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			509	43	423	1	ENST00000371085.3:c.1067G>A	p.Arg356His	p.R356H	ENST00000371085	NM_000516.4	356	cGt/cAt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564345	86564345	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765793195		P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			463	97	425	1	ENST00000274376.6:c.77G>A	p.Gly26Asp	p.G26D	ENST00000274376	NM_002890.2	26	gGc/gAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55220328	55220328	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	110	282	2	ENST00000275493.2:c.718T>C	p.Cys240Arg	p.C240R	ENST00000275493	NM_005228.3	240	Tgc/Cgc																																																																															
BRAF	673	MSKCC	GRCh37	7	140494247	140494247	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730880418		P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			652	136	401	2	ENST00000288602.6:c.1001C>T	p.Pro334Leu	p.P334L	ENST00000288602	NM_004333.4	334	cCg/cTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845959	151845959	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			587	132	456	5	ENST00000262189.6:c.13053del	p.Lys4351AsnfsTer5	p.K4351Nfs*5	ENST00000262189	NM_170606.2	4351	aaA/aa																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			616	65	432	2	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391968	139391968	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs549258808		P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			400	50	468	2	ENST00000277541.6:c.6223G>A	p.Glu2075Lys	p.E2075K	ENST00000277541	NM_017617.3	2075	Gag/Aag																																																																															
NADK	65220	MSKCC	GRCh37	1	1685592	1685597	+	inframe_deletion	In_Frame_Del	DEL	GGCCCC	GGCCCC	-			P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			391	51	458	3	ENST00000341426.5:c.994_999del	p.Gly332_Ala333del	p.G332_A333del	ENST00000341426	NM_023018.4	332	GGGGCC/-																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260646	16260646	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			552	31	534	0	ENST00000375759.3:c.7911A>G	p.Ile2637Met	p.I2637M	ENST00000375759	NM_015001.2	2637	atA/atG																																																																															
PGR	5241	MSKCC	GRCh37	11	100999583	100999584	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			558	56	494	2	ENST00000325455.5:c.218dup	p.Thr74AspfsTer18	p.T74Dfs*18	ENST00000325455	NM_001202474.3	73	aag/aaAg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42852460	42852461	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			492	69	403	5	ENST00000398585.3:c.625_626del	p.Cys209ProfsTer19	p.C209Pfs*19	ENST00000398585	NM_001135099.1	209	TGc/c																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458630	12458630	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			386	47	346	0	ENST00000287820.6:c.1247T>A	p.Ile416Asn	p.I416N	ENST00000287820	NM_015869.4	416	aTt/aAt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940927	49940927	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1358452249		P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			505	51	483	5	ENST00000296474.3:c.116A>G	p.Asp39Gly	p.D39G	ENST00000296474	NM_002447.2	39	gAc/gGc																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84390236	84390237	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-	rs1340107537		P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			223	24	181	0	ENST00000321945.7:c.544_545del	p.Val182IlefsTer10	p.V182Ifs*10	ENST00000321945	NM_139076.2	182	GTa/a																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180400	32180400	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			543	67	438	1	ENST00000375023.3:c.2531T>C	p.Leu844Pro	p.L844P	ENST00000375023	NM_004557.3	844	cTg/cCg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117679162	117679162	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			307	38	128	0	ENST00000368508.3:c.3659A>T	p.Asp1220Val	p.D1220V	ENST00000368508	NM_002944.2	1220	gAt/gTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0072140-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	78	378	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578277	+	stop_gained	Nonsense_Mutation	ONP	GAG	GAG	AAA			P-0072140-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	62	637	0	ENST00000269305.4:c.572_574delinsTTT	p.Pro191_Gln192delinsLeuTer	p.P191_Q192delinsL*	ENST00000269305	NM_001126112.2	191	cCTCag/cTTTag																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123325021	123325021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072152-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			577	137	428	0	ENST00000358487.5:c.307G>A	p.Gly103Ser	p.G103S	ENST00000358487	NM_000141.4	103	Ggc/Agc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94963987	94963987	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs746445662		P-0072152-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			332	98	316	0	ENST00000536441.1:c.38A>G	p.Asn13Ser	p.N13S	ENST00000536441	NM_144665.3	13	aAc/aGc																																																																															
RB1	5925	MSKCC	GRCh37	13	48953730	48953730	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs3092891		P-0072152-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			180	87	181	0	ENST00000267163.4:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000267163	NM_000321.2	445	Cga/Tga																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046617	30046617	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149150061		P-0072152-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			611	97	411	0	ENST00000331968.5:c.2566G>A	p.Gly856Arg	p.G856R	ENST00000331968	NM_002742.2	856	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs879253942		P-0072152-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			292	341	349	0	ENST00000269305.4:c.794T>C	p.Leu265Pro	p.L265P	ENST00000269305	NM_001126112.2	265	cTg/cCg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610129	10610129	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0072152-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	361	418	0	ENST00000171111.5:c.581T>G	p.Ile194Ser	p.I194S	ENST00000171111	NM_203500.1	194	aTt/aGt																																																																															
KIT	3815	MSKCC	GRCh37	4	55564618	55564618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072152-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			634	125	348	0	ENST00000288135.5:c.506G>A	p.Gly169Asp	p.G169D	ENST00000288135	NM_000222.2	169	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072152-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			432	133	454	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256514	16256514	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1440344407		P-0072152-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			609	182	555	0	ENST00000375759.3:c.3779G>T	p.Gly1260Val	p.G1260V	ENST00000375759	NM_015001.2	1260	gGt/gTt																																																																															
MYCL	4610	MSKCC	GRCh37	1	40367518	40367518	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0072152-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			665	216	679	0	ENST00000397332.2:c.43G>T	p.Gly15Ter	p.G15*	ENST00000397332	NM_001033082.2	15	Gga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435943	49435943	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072152-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	325	438	0	ENST00000301067.7:c.6038del	p.Gly2013AlafsTer34	p.G2013Afs*34	ENST00000301067	NM_003482.3	2013	gGc/gc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176722428	176722428	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0072152-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			403	212	437	0	ENST00000439151.2:c.8059A>T	p.Ser2687Cys	p.S2687C	ENST00000439151	NM_022455.4	2687	Agt/Tgt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250410	110250410	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072152-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			272	241	396	0	ENST00000374672.4:c.265G>C	p.Ala89Pro	p.A89P	ENST00000374672	NM_004235.4	89	Gcg/Ccg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396450	139396452	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CAC	CAC	-			P-0072152-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			544	170	501	1	ENST00000277541.6:c.5472+1_5472+3del		p.X1824_splice	ENST00000277541	NM_017617.3	1824																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139438487	139438494	+	frameshift_variant	Frame_Shift_Del	DEL	CGTGCCAT	CGTGCCAT	-			P-0072152-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			305	244	352	0	ENST00000277541.6:c.122_129del	p.Asn41ArgfsTer99	p.N41Rfs*99	ENST00000277541	NM_017617.3	41	aATGGCACG/a																																																																															
PAX5	5079	MSKCC	GRCh37	9	37002723	37002723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072152-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			499	172	428	0	ENST00000358127.4:c.526G>A	p.Gly176Ser	p.G176S	ENST00000358127	NM_001280556.1	176	Ggc/Agc																																																																															
CBL	867	MSKCC	GRCh37	11	119169166	119169166	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140725852		P-0072396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	180	396	0	ENST00000264033.4:c.2350G>A	p.Val784Met	p.V784M	ENST00000264033	NM_005188.3	784	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0072396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	248	438	1	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147534	47147534	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0072396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	136	520	0	ENST00000409792.3:c.4792C>T	p.Arg1598Ter	p.R1598*	ENST00000409792	NM_014159.6	1598	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0072396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	79	271	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46597525	46597525	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	134	285	0	ENST00000262741.5:c.100C>A	p.Pro34Thr	p.P34T	ENST00000262741	NM_003629.3	34	Cct/Act																																																																															
ATM	472	MSKCC	GRCh37	11	108204660	108204660	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	106	256	0	ENST00000278616.4:c.7975T>A	p.Leu2659Ile	p.L2659I	ENST00000278616	NM_000051.3	2659	Tta/Ata																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30102132	30102132	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	15	261	1	ENST00000331968.5:c.1335A>T	p.Arg445Ser	p.R445S	ENST00000331968	NM_002742.2	445	agA/agT																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61304985	61304985	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1438171301		P-0072396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	75	231	0	ENST00000341074.5:c.1141A>C	p.Ile381Leu	p.I381L	ENST00000341074	NM_002974.2	381	Atc/Ctc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672234	86672234	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762279462		P-0072396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	140	337	0	ENST00000274376.6:c.2036G>A	p.Arg679Gln	p.R679Q	ENST00000274376	NM_002890.2	679	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175534	112175535	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0072396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	165	396	0	ENST00000257430.4:c.4245_4246dup	p.Gly1416ValfsTer4	p.G1416Vfs*4	ENST00000257430	NM_000038.5	1415	agt/aGTgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0072574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	198	405	0	ENST00000269305.4:c.389T>G	p.Leu130Arg	p.L130R	ENST00000269305	NM_001126112.2	130	cTc/cGc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941459	71941459	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	77	459	0	ENST00000298229.2:c.1144G>C	p.Glu382Gln	p.E382Q	ENST00000298229	NM_001567.3	382	Gag/Cag																																																																															
B2M	567	MSKCC	GRCh37	15	45003755	45003755	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	129	400	0	ENST00000558401.1:c.11C>G	p.Ser4Cys	p.S4C	ENST00000558401	NM_004048.2	4	tCc/tGc																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158473	26158473	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770688022		P-0072574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	187	456	0	ENST00000289316.2:c.76G>A	p.Asp26Asn	p.D26N	ENST00000289316	NM_138720.2	26	Gac/Aac																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78923320	78923320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	110	371	0	ENST00000306801.3:c.3343C>A	p.Leu1115Ile	p.L1115I	ENST00000306801	NM_020761.2	1115	Ctc/Atc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748230	41748230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	19	458	0	ENST00000226382.2:c.539G>A	p.Arg180Lys	p.R180K	ENST00000226382	NM_003924.3	180	aGg/aAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0072644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	247	430	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499772	8499772	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773166856		P-0072644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	71	321	0	ENST00000356435.5:c.2197C>T	p.Arg733Cys	p.R733C	ENST00000356435		733	Cgc/Tgc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206650070	206650070	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782265530		P-0072662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	34	710	0	ENST00000367120.3:c.590C>T	p.Ala197Val	p.A197V	ENST00000367120	NM_014002.3	197	gCg/gTg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871060	12871070	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGTGCCTGC	AAGGTGCCTGC	-			P-0072662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	160	684	0	ENST00000228872.4:c.295_305del	p.Cys99GlyfsTer22	p.C99Gfs*22	ENST00000228872	NM_004064.3	96	aAAGGTGCCTGC/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7577112	7577113	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0072662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	196	703	0	ENST00000269305.4:c.825_826del	p.Ala276LeufsTer29	p.A276Lfs*29	ENST00000269305	NM_001126112.2	275	tgTGcc/tgcc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0072662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			91	73	237	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
WT1	7490	MSKCC	GRCh37	11	32450122	32450122	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	175	662	0	ENST00000332351.3:c.690C>G	p.His230Gln	p.H230Q	ENST00000332351	NM_024426.4	230	caC/caG																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045673	26045673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	208	685	1	ENST00000540144.1:c.35C>T	p.Thr12Ile	p.T12I	ENST00000540144	NM_003531.2	12	aCc/aTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	36	299	0	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578469	+	inframe_deletion	In_Frame_Del	DEL	CGCGGGTGC	CGCGGGTGC	-			P-0072667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	165	585	0	ENST00000269305.4:c.461_469del	p.Gly154_Arg156del	p.G154_R156del	ENST00000269305	NM_001126112.2	154	gGCACCCGCGtc/gtc																																																																															
APC	324	MSKCC	GRCh37	5	112163683	112163683	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	65	340	0	ENST00000257430.4:c.1606G>T	p.Glu536Ter	p.E536*	ENST00000257430	NM_000038.5	536	Gaa/Taa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098604	47098604	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1304905045		P-0072667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	192	650	0	ENST00000409792.3:c.6670C>T	p.Pro2224Ser	p.P2224S	ENST00000409792	NM_014159.6	2224	Cca/Tca																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279878	29279878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	88	314	0	ENST00000544604.2:c.124G>A	p.Gly42Arg	p.G42R	ENST00000544604	NM_001206998.1	42	Ggg/Agg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0072745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			44	140	198	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
ALK	238	MSKCC	GRCh37	2	29462643	29462643	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187200776		P-0072745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	105	421	0	ENST00000389048.3:c.2258G>A	p.Arg753Gln	p.R753Q	ENST00000389048	NM_004304.4	753	cGg/cAg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372230	55372230	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	142	478	0	ENST00000297316.4:c.920G>C	p.Gly307Ala	p.G307A	ENST00000297316	NM_022454.3	307	gGc/gCc																																																																															
APC	324	MSKCC	GRCh37	5	112151191	112151191	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0072745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			18	33	116	0	ENST00000257430.4:c.835-1G>A		p.X279_splice	ENST00000257430	NM_000038.5	279																																																																																
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0072769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	291	545	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846291	156846291	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760764097		P-0072769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	213	461	0	ENST00000524377.1:c.1732G>A	p.Val578Ile	p.V578I	ENST00000524377	NM_002529.3	578	Gtc/Atc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878144	151878171	+	frameshift_variant	Frame_Shift_Del	DEL	CCTTACCAACGGGCCAGGTAAAGCTGGT	CCTTACCAACGGGCCAGGTAAAGCTGGT	-			P-0072769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	236	455	0	ENST00000262189.6:c.6774_6801del	p.Pro2259HisfsTer37	p.P2259Hfs*37	ENST00000262189	NM_170606.2	2258	ggACCAGCTTTACCTGGCCCGTTGGTAAGG/gg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100727	8100728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs771019738		P-0072775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	97	414	2	ENST00000346208.3:c.708dup	p.Ser237GlnfsTer66	p.S237Qfs*66	ENST00000346208		234	ttc/ttCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0072775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	412	493	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46262366	46262366	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200506500		P-0072775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	60	341	0	ENST00000371998.3:c.950G>A	p.Arg317His	p.R317H	ENST00000371998		317	cGt/cAt																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195763	102195763	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	107	417	0	ENST00000263464.3:c.523A>G	p.Thr175Ala	p.T175A	ENST00000263464	NM_001165.4	175	Act/Gct																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39573235	39573235	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G	rs1431291285		P-0072775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	10	262	0	ENST00000262039.4:c.716A>G	p.Asp239Gly	p.D239G	ENST00000262039	NM_002647.2	239	gAc/gGc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86670702	86670702	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	25	236	0	ENST00000274376.6:c.1980T>G	p.Asn660Lys	p.N660K	ENST00000274376	NM_002890.2	660	aaT/aaG																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786204864		P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	197	284	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs863224683		P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	310	416	0	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135777011	135777011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	332	292	0	ENST00000298552.3:c.2467C>T	p.His823Tyr	p.H823Y	ENST00000298552	NM_001162426.1	823	Cac/Tac																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523310	9523311	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	137	398	1	ENST00000353224.5:c.1926dup	p.Tyr643LeufsTer4	p.Y643Lfs*4	ENST00000353224	NM_177990.2	642	-/C																																																																															
ATRX	546	MSKCC	GRCh37	X	76940499	76940499	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			50	165	88	0	ENST00000373344.5:c.595-1G>T		p.X199_splice	ENST00000373344	NM_000489.3	199																																																																																
PPP2R1A	5518	MSKCC	GRCh37	19	52716334	52716334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	416	400	0	ENST00000322088.6:c.778C>T	p.Arg260Cys	p.R260C	ENST00000322088	NM_014225.5	260	Cgc/Tgc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146845	185146845	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1399368807		P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	208	301	0	ENST00000265026.3:c.475+1G>A		p.X159_splice	ENST00000265026	NM_004721.4	159																																																																																
JAK3	3718	MSKCC	GRCh37	19	17947943	17947943	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	225	307	0	ENST00000458235.1:c.1781G>C	p.Gly594Ala	p.G594A	ENST00000458235	NM_000215.3	594	gGa/gCa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17949174	17949174	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	316	417	0	ENST00000458235.1:c.1467G>C	p.Gln489His	p.Q489H	ENST00000458235	NM_000215.3	489	caG/caC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914473	32914473	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs80358832		P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	219	376	0	ENST00000380152.3:c.5981A>G	p.Gln1994Arg	p.Q1994R	ENST00000380152		1994	cAa/cGa																																																																															
POT1	25913	MSKCC	GRCh37	7	124493081	124493081	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781279819		P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	56	297	0	ENST00000357628.3:c.814G>A	p.Gly272Ser	p.G272S	ENST00000357628	NM_015450.2	272	Ggt/Agt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145764	11145764	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	220	417	0	ENST00000344626.4:c.4126G>T	p.Glu1376Ter	p.E1376*	ENST00000344626	NM_003072.3	1376	Gag/Tag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118377030	118377030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	441	479	0	ENST00000534358.1:c.10423C>T	p.Leu3475Phe	p.L3475F	ENST00000534358	NM_005933.3	3475	Ctt/Ttt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117633	70117633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	166	470	0	ENST00000245479.2:c.101C>A	p.Pro34His	p.P34H	ENST00000245479	NM_000346.3	34	cCc/cAc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2088551	2088551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	439	236	0	ENST00000349721.2:c.2821G>T	p.Val941Leu	p.V941L	ENST00000349721	NM_003070.3	941	Gtg/Ttg																																																																															
POLE	5426	MSKCC	GRCh37	12	133245240	133245240	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	326	400	0	ENST00000320574.5:c.2007G>T	p.Trp669Cys	p.W669C	ENST00000320574	NM_006231.2	669	tgG/tgT																																																																															
SDHA	6389	MSKCC	GRCh37	5	218507	218507	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	245	272	0	ENST00000264932.6:c.37G>C	p.Ala13Pro	p.A13P	ENST00000264932	NM_004168.2	13	Gct/Cct																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411899	63411899	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	349	248	0	ENST00000330258.3:c.1268T>C	p.Leu423Pro	p.L423P	ENST00000330258	NM_152424.3	423	cTg/cCg																																																																															
ATRX	546	MSKCC	GRCh37	X	76939723	76939723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	284	162	0	ENST00000373344.5:c.1025C>T	p.Ser342Phe	p.S342F	ENST00000373344	NM_000489.3	342	tCt/tTt																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230492897	230492897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	118	413	0	ENST00000525115.1:c.295A>G	p.Lys99Glu	p.K99E	ENST00000525115		99	Aag/Gag																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729981	41729981	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	264	485	0	ENST00000242208.4:c.548A>T	p.Gln183Leu	p.Q183L	ENST00000242208	NM_002192.2	183	cAg/cTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375832	118375832	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	505	501	0	ENST00000534358.1:c.9225G>T	p.Lys3075Asn	p.K3075N	ENST00000534358	NM_005933.3	3075	aaG/aaT																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551949	150551949	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	79	410	1	ENST00000369026.2:c.58G>C	p.Gly20Arg	p.G20R	ENST00000369026	NM_021960.4	20	Ggc/Cgc																																																																															
REST	5978	MSKCC	GRCh37	4	57777248	57777249	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	169	474	1	ENST00000309042.7:c.444_445delinsAT	p.Asp149Tyr	p.D149Y	ENST00000309042	NM_005612.4	148	gaGGac/gaATac																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861254	57861254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			759	237	356	0	ENST00000228682.2:c.1051C>A	p.His351Asn	p.H351N	ENST00000228682	NM_005269.2	351	Cac/Aac																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861242	57861244	+	missense_variant	Missense_Mutation	ONP	GAC	GAC	AAA			P-0072861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			763	234	387	0	ENST00000228682.2:c.1039_1041delinsAAA	p.Asp347Lys	p.D347K	ENST00000228682	NM_005269.2	347	GAC/AAA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107113	27107113	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072890-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			540	86	959	0	ENST00000324856.7:c.6724G>C	p.Ala2242Pro	p.A2242P	ENST00000324856	NM_006015.4	2242	Gcc/Ccc																																																																															
REST	5978	MSKCC	GRCh37	4	57796054	57796054	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072890-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			310	96	479	0	ENST00000309042.7:c.1030C>T	p.Gln344Ter	p.Q344*	ENST00000309042	NM_005612.4	344	Caa/Taa																																																																															
TERT	7015	MSKCC	GRCh37	5	1253902	1253902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072890-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			513	121	872	0	ENST00000310581.5:c.3340G>T	p.Ala1114Ser	p.A1114S	ENST00000310581	NM_198253.2	1114	Gcc/Tcc																																																																															
JUN	3725	MSKCC	GRCh37	1	59248409	59248409	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1184098204		P-0072894-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	174	501	0	ENST00000371222.2:c.334G>A	p.Glu112Lys	p.E112K	ENST00000371222	NM_002228.3	112	Gag/Aag																																																																															
MGA	23269	MSKCC	GRCh37	15	42041410	42041410	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072894-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	173	490	0	ENST00000219905.7:c.5605C>T	p.Gln1869Ter	p.Q1869*	ENST00000219905	NM_001164273.1	1869	Caa/Taa																																																																															
MGA	23269	MSKCC	GRCh37	15	42041449	42041449	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072894-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	183	517	0	ENST00000219905.7:c.5644C>G	p.Gln1882Glu	p.Q1882E	ENST00000219905	NM_001164273.1	1882	Cag/Gag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117638347	117638347	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519788		P-0072894-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	259	389	0	ENST00000368508.3:c.6094G>A	p.Gly2032Arg	p.G2032R	ENST00000368508	NM_002944.2	2032	Gga/Aga																																																																															
EP300	2033	MSKCC	GRCh37	22	41560094	41560094	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072894-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	122	359	0	ENST00000263253.7:c.3766C>G	p.Gln1256Glu	p.Q1256E	ENST00000263253	NM_001429.3	1256	Cag/Gag																																																																															
POT1	25913	MSKCC	GRCh37	7	124492004	124492004	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0072894-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	59	243	0	ENST00000357628.3:c.871G>C	p.Asp291His	p.D291H	ENST00000357628	NM_015450.2	291	Gat/Cat																																																																															
SESN3	143686	MSKCC	GRCh37	11	94922945	94922945	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0072907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	24	302	0	ENST00000536441.1:c.523C>A	p.Gln175Lys	p.Q175K	ENST00000536441	NM_144665.3	175	Cag/Aag																																																																															
MGA	23269	MSKCC	GRCh37	15	41988764	41988764	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs541917777		P-0072907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	47	455	0	ENST00000219905.7:c.1556C>T	p.Ala519Val	p.A519V	ENST00000219905	NM_001164273.1	519	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0073020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	437	451	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
CBL	867	MSKCC	GRCh37	11	119148486	119148486	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs765471101		P-0073020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	114	274	0	ENST00000264033.4:c.1027C>T	p.Arg343Ter	p.R343*	ENST00000264033	NM_005188.3	343	Cga/Tga																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922880	44922880	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			53	641	211	0	ENST00000377967.4:c.1741del	p.Thr581HisfsTer12	p.T581Hfs*12	ENST00000377967	NM_021140.2	581	Aca/ca																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187458	32187459	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0073020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	336	511	0	ENST00000375023.3:c.1420_1421delinsAA	p.Ala474Asn	p.A474N	ENST00000375023	NM_004557.3	474	GCt/AAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0073168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	140	809	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098948	47098948	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs967982470		P-0073168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	102	450	0	ENST00000409792.3:c.6326G>A	p.Arg2109Gln	p.R2109Q	ENST00000409792	NM_014159.6	2109	cGa/cAa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016548	12016548	+	splice_acceptor_variant	Splice_Site	DEL	A	A	-			P-0073168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	85	361	0	ENST00000353533.5:c.686-2del		p.X229_splice	ENST00000353533	NM_003010.3	229																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27087574	27087577	+	frameshift_variant	Frame_Shift_Del	DEL	TGCT	TGCT	-			P-0073168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	124	697	0	ENST00000324856.7:c.2148_2151del	p.Ala717GlnfsTer24	p.A717Qfs*24	ENST00000324856	NM_006015.4	716	ccTGCT/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0073321-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	89	436	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874713	151874713	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0073321-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	76	499	0	ENST00000262189.6:c.7825C>T	p.Arg2609Ter	p.R2609*	ENST00000262189	NM_170606.2	2609	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0073373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	138	362	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117755	70117755	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	74	625	0	ENST00000245479.2:c.223G>T	p.Glu75Ter	p.E75*	ENST00000245479	NM_000346.3	75	Gag/Tag																																																																															
AKT3	10000	MSKCC	GRCh37	1	243858938	243858938	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	46	435	0	ENST00000263826.5:c.127C>G	p.Gln43Glu	p.Q43E	ENST00000263826	NM_005465.4	43	Caa/Gaa																																																																															
KDR	3791	MSKCC	GRCh37	4	55968153	55968153	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	26	413	0	ENST00000263923.4:c.2177G>C	p.Arg726Thr	p.R726T	ENST00000263923	NM_002253.2	726	aGa/aCa																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665048	138665048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	40	339	0	ENST00000330315.3:c.517G>A	p.Ala173Thr	p.A173T	ENST00000330315	NM_023067.3	173	Gca/Aca																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0073412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	60	387	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	187	404	0	ENST00000263967.3:c.3132T>G	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433960	49433960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	236	541	0	ENST00000301067.7:c.7593del	p.Ser2532LeufsTer11	p.S2532Lfs*11	ENST00000301067	NM_003482.3	2531	ccC/cc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111556	8111556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	160	363	0	ENST00000346208.3:c.1042C>A	p.His348Asn	p.H348N	ENST00000346208		348	Cac/Aac																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946749	71946749	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	221	537	0	ENST00000298229.2:c.2690G>C	p.Gly897Ala	p.G897A	ENST00000298229	NM_001567.3	897	gGa/gCa																																																																															
CDH1	999	MSKCC	GRCh37	16	68863647	68863648	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	196	359	0	ENST00000261769.5:c.2388dup	p.Tyr797ValfsTer10	p.Y797Vfs*10	ENST00000261769	NM_004360.3	796	cgg/cGgg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465265	120465265	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	204	453	0	ENST00000256646.2:c.4996G>T	p.Val1666Phe	p.V1666F	ENST00000256646	NM_024408.3	1666	Gtc/Ttc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250343	110250343	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	185	417	0	ENST00000374672.4:c.332A>G	p.Asn111Ser	p.N111S	ENST00000374672	NM_004235.4	111	aAt/aGt																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21350101	21350122	+	stop_gained,protein_altering_variant	Nonsense_Mutation	DEL	CTCTGTTGCTTGACGGGCACCC	CTCTGTTGCTTGACGGGCACCC	TTCTGTG			P-0073412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	138	495	1	ENST00000215739.8:c.2009_2030delinsTTCTGTG	p.Thr670_Pro677delinsIleLeuTer	p.T670_P677delinsIL*	ENST00000215739	NM_006767.3	670	aCTCTGTTGCTTGACGGGCACCCa/aTTCTGTGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs942158624		P-0073575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	352	704	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																															
ATM	472	MSKCC	GRCh37	11	108196053	108196053	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	111	397	1	ENST00000278616.4:c.6589C>G	p.Gln2197Glu	p.Q2197E	ENST00000278616	NM_000051.3	2197	Caa/Gaa																																																																															
APC	324	MSKCC	GRCh37	5	112174663	112174663	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	129	547	0	ENST00000257430.4:c.3372del	p.Asn1124LysfsTer2	p.N1124Kfs*2	ENST00000257430	NM_000038.5	1124	aaT/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175375	112175375	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	65	463	0	ENST00000257430.4:c.4084del	p.Ser1362ProfsTer53	p.S1362Pfs*53	ENST00000257430	NM_000038.5	1362	Tcc/cc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029511	16029511	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0073616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			282	30	280	0	ENST00000268712.3:c.1519C>T	p.Arg507Ter	p.R507*	ENST00000268712	NM_006311.3	507	Cga/Tga																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940967	71940967	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0073616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			374	89	393	0	ENST00000298229.2:c.844-1G>A		p.X282_splice	ENST00000298229	NM_001567.3	282																																																																																
LZTR1	8216	MSKCC	GRCh37	22	21350355	21350355	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778626874		P-0073616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			374	103	324	0	ENST00000215739.8:c.2173C>T	p.Arg725Cys	p.R725C	ENST00000215739	NM_006767.3	725	Cgc/Tgc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139820220	139820220	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			571	99	384	0	ENST00000247668.2:c.1373G>C	p.Arg458Thr	p.R458T	ENST00000247668	NM_021138.3	458	aGg/aCg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141561478	141561478	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			825	87	356	0	ENST00000220592.5:c.1327C>G	p.His443Asp	p.H443D	ENST00000220592	NM_012154.3	443	Cac/Gac																																																																															
NF1	4763	MSKCC	GRCh37	17	29556320	29556320	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			458	33	348	0	ENST00000358273.4:c.2687A>T	p.Asp896Val	p.D896V	ENST00000358273	NM_001042492.2	896	gAt/gTt																																																																															
KDR	3791	MSKCC	GRCh37	4	55946186	55946186	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1204534386		P-0073616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			485	46	334	0	ENST00000263923.4:c.3993G>C	p.Glu1331Asp	p.E1331D	ENST00000263923	NM_002253.2	1331	gaG/gaC																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713441	30713456	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGAGGTCTATAAGG	GCTGAGGTCTATAAGG	-			P-0073616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			427	65	455	0	ENST00000359013.4:c.841_856del	p.Ala281ProfsTer3	p.A281Pfs*3	ENST00000359013	NM_001024847.2	281	GCTGAGGTCTATAAGGcc/cc																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40682121	40682121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			310	32	244	0	ENST00000249776.8:c.676C>T	p.Leu226Phe	p.L226F	ENST00000249776	NM_033286.3	226	Ctt/Ttt																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085629	16085629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			534	84	282	0	ENST00000281043.3:c.805G>A	p.Glu269Lys	p.E269K	ENST00000281043	NM_005378.4	269	Gaa/Aaa																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279610	18279610	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			498	98	357	0	ENST00000222254.8:c.1883A>T	p.Asn628Ile	p.N628I	ENST00000222254	NM_005027.3	628	aAc/aTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047986	180047986	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			474	49	388	0	ENST00000261937.6:c.2189A>T	p.Asn730Ile	p.N730I	ENST00000261937	NM_182925.4	730	aAc/aTc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987272	2987272	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			413	44	275	0	ENST00000396946.4:c.157G>C	p.Asp53His	p.D53H	ENST00000396946	NM_032415.4	53	Gat/Cat																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943773	71943773	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs768702912		P-0073616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			385	44	336	0	ENST00000298229.2:c.1816G>C	p.Gly606Arg	p.G606R	ENST00000298229	NM_001567.3	606	Ggg/Cgg																																																																															
BCL6	604	MSKCC	GRCh37	3	187447517	187447517	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0073616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			492	66	448	0	ENST00000232014.4:c.676A>T	p.Lys226Ter	p.K226*	ENST00000232014	NM_001130845.1	226	Aag/Tag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465484	99465539	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTGGAGACAGAGTACCCTTTCTTTGAGAGCAGAGTGGATAACAAGGAGAGAACT	AGCTGGAGACAGAGTACCCTTTCTTTGAGAGCAGAGTGGATAACAAGGAGAGAACT	-			P-0073616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			685	49	333	0	ENST00000268035.6:c.2309_2364del	p.Glu770GlyfsTer4	p.E770Gfs*4	ENST00000268035	NM_000875.3	770	gAGCTGGAGACAGAGTACCCTTTCTTTGAGAGCAGAGTGGATAACAAGGAGAGAACT/g																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941867	71941867	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0073670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	203	331	1	ENST00000298229.2:c.1225C>T	p.Gln409Ter	p.Q409*	ENST00000298229	NM_001567.3	409	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120132	70120133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0073822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	224	416	0	ENST00000245479.2:c.1137_1138dup	p.His380ArgfsTer4	p.H380Rfs*4	ENST00000245479	NM_000346.3	378	-/GC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0073822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	144	437	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375016	45375016	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1226662382		P-0073822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	115	328	0	ENST00000262160.6:c.827C>T	p.Ser276Leu	p.S276L	ENST00000262160	NM_005901.5	276	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112173956	112173957	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0073822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	114	371	0	ENST00000257430.4:c.2666_2667del	p.Lys889SerfsTer22	p.K889Sfs*22	ENST00000257430	NM_000038.5	889	AAa/a																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919770	50919770	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373389672		P-0073822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	96	416	0	ENST00000440232.2:c.2938G>A	p.Glu980Lys	p.E980K	ENST00000440232	NM_002691.3	980	Gag/Aag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139779	55139779	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	113	377	0	ENST00000257290.5:c.1440C>A	p.Asp480Glu	p.D480E	ENST00000257290	NM_006206.4	480	gaC/gaA																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681119	30681119	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	84	300	0	ENST00000376406.3:c.600del	p.His201IlefsTer16	p.H201Ifs*16	ENST00000376406	NM_014641.2	200	ggG/gg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163720	32163720	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1253487294		P-0073868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	175	323	0	ENST00000375023.3:c.5506G>A	p.Glu1836Lys	p.E1836K	ENST00000375023	NM_004557.3	1836	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912664		P-0073868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	252	298	0	ENST00000269305.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000269305	NM_001126112.2	337	cGc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157511270	157511270	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	397	336	0	ENST00000346085.5:c.3788G>T	p.Gly1263Val	p.G1263V	ENST00000346085	NM_020732.3	1263	gGc/gTc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349114	89349115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	66	423	0	ENST00000301030.4:c.3835dup	p.Ser1279LysfsTer4	p.S1279Kfs*4	ENST00000301030	NM_001256183.1	1279	agc/aAgc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40491390	40491390	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	98	302	2	ENST00000264657.5:c.410T>C	p.Val137Ala	p.V137A	ENST00000264657	NM_139276.2	137	gTg/gCg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151843791	151843791	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	230	269	0	ENST00000262189.6:c.13924G>C	p.Ala4642Pro	p.A4642P	ENST00000262189	NM_170606.2	4642	Gca/Cca																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0073981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	162	393	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0073981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	107	515	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519803		P-0073981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	121	452	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12044491	12044491	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	47	320	1	ENST00000353533.5:c.1114G>T	p.Glu372Ter	p.E372*	ENST00000353533	NM_003010.3	372	Gaa/Taa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129198	152129198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	45	498	1	ENST00000206249.3:c.151G>A	p.Val51Met	p.V51M	ENST00000206249	NM_000125.3	51	Gtg/Atg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458071	120458071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	76	473	0	ENST00000256646.2:c.7274G>T	p.Trp2425Leu	p.W2425L	ENST00000256646	NM_024408.3	2425	tGg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0074135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	111	430	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112174471	112174475	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAC	AAAAC	-	rs1162672416		P-0074135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	65	395	0	ENST00000257430.4:c.3183_3187del	p.Gln1062Ter	p.Q1062*	ENST00000257430	NM_000038.5	1060	atAAAACaa/ataa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738644	145738644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs571684398		P-0074135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	237	443	1	ENST00000428558.2:c.2420G>A	p.Arg807His	p.R807H	ENST00000428558	NM_004260.3	807	cGt/cAt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120611999	120611999	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	10	50	0	ENST00000256646.2:c.22C>G	p.Leu8Val	p.L8V	ENST00000256646	NM_024408.3	8	Ctg/Gtg																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225386	26225386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	94	351	0	ENST00000360408.1:c.4G>T	p.Ala2Ser	p.A2S	ENST00000360408	NM_003532.2	2	Gcg/Tcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0074268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	50	136	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93964495	93964495	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	21	205	0	ENST00000369303.4:c.2402G>T	p.Arg801Met	p.R801M	ENST00000369303	NM_004440.3	801	aGg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443806	49443806	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs556879323		P-0074288-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	64	363	0	ENST00000301067.7:c.3565C>T	p.Arg1189Cys	p.R1189C	ENST00000301067	NM_003482.3	1189	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574004	7574005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0074288-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	174	228	0	ENST00000269305.4:c.1022dup	p.Arg342ProfsTer5	p.R342Pfs*5	ENST00000269305	NM_001126112.2	341	ttc/ttTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0074288-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	1154	259	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741701	145741701	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs561010978		P-0074288-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	80	384	0	ENST00000428558.2:c.802C>T	p.Pro268Ser	p.P268S	ENST00000428558	NM_004260.3	268	Ccc/Tcc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37884017	37884017	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074288-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	60	426	0	ENST00000269571.5:c.3488C>G	p.Ala1163Gly	p.A1163G	ENST00000269571		1163	gCt/gGt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024384	31024384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779080154		P-0074288-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			75	293	296	0	ENST00000375687.4:c.3869C>T	p.Ala1290Val	p.A1290V	ENST00000375687	NM_015338.5	1290	gCc/gTc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21348468	21348468	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074288-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	52	437	0	ENST00000215739.8:c.1525C>G	p.Leu509Val	p.L509V	ENST00000215739	NM_006767.3	509	Ctg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0074579-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	293	392	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55138642	55138642	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143344944		P-0074579-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	60	331	0	ENST00000257290.5:c.1319C>T	p.Thr440Met	p.T440M	ENST00000257290	NM_006206.4	440	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0074579-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	297	396	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004766	16004766	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0074579-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	405	442	0	ENST00000268712.3:c.2488G>T	p.Glu830Ter	p.E830*	ENST00000268712	NM_006311.3	830	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112116486	112116486	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0074579-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	34	219	0	ENST00000257430.4:c.532-1G>C		p.X178_splice	ENST00000257430	NM_000038.5	178																																																																																
PMS1	5378	MSKCC	GRCh37	2	190728911	190728911	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs188947672		P-0074579-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	99	338	0	ENST00000441310.2:c.2299C>G	p.Leu767Val	p.L767V	ENST00000441310	NM_000534.4	767	Ctt/Gtt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426103	49426104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0074579-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	78	501	0	ENST00000301067.7:c.12384_12385insC	p.Ser4129LeufsTer39	p.S4129Lfs*39	ENST00000301067	NM_003482.3	4128	-/C																																																																															
IRF4	3662	MSKCC	GRCh37	6	393309	393309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074579-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	285	424	0	ENST00000380956.4:c.157C>T	p.Pro53Ser	p.P53S	ENST00000380956	NM_001195286.1	53	Ccc/Tcc																																																																															
ATM	472	MSKCC	GRCh37	11	108139240	108139246	+	frameshift_variant	Frame_Shift_Del	DEL	TACTGTG	TACTGTG	-			P-0074579-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	26	409	0	ENST00000278616.4:c.2743_2749del	p.Thr915ProfsTer12	p.T915Pfs*12	ENST00000278616	NM_000051.3	914	aaTACTGTG/aa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2223313	2223313	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074579-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	56	451	0	ENST00000398665.3:c.3424del	p.Ala1142ProfsTer9	p.A1142Pfs*9	ENST00000398665	NM_032482.2	1142	Gcc/cc																																																																															
AURKA	6790	MSKCC	GRCh37	20	54956566	54956566	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074579-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	123	347	0	ENST00000312783.6:c.628C>G	p.Leu210Val	p.L210V	ENST00000312783	NM_198436.1	210	Ctg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0074722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	202	436	1	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0074722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	166	424	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508253	106508253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	151	515	0	ENST00000359195.3:c.247G>A	p.Val83Met	p.V83M	ENST00000359195	NM_002649.2	83	Gtg/Atg																																																																															
SDHA	6389	MSKCC	GRCh37	5	228307	228307	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762108779		P-0074722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	38	260	0	ENST00000264932.6:c.629G>A	p.Arg210Gln	p.R210Q	ENST00000264932	NM_004168.2	210	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112174143	112174143	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0074722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	257	437	0	ENST00000257430.4:c.2852del	p.Tyr951LeufsTer4	p.Y951Lfs*4	ENST00000257430	NM_000038.5	951	tAt/tt																																																																															
HGF	3082	MSKCC	GRCh37	7	81350137	81350137	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0074722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	113	354	0	ENST00000222390.5:c.1195T>G	p.Tyr399Asp	p.Y399D	ENST00000222390	NM_000601.4	399	Tat/Gat																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30321674	30321674	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	123	394	0	ENST00000322652.5:c.1529C>A	p.Pro510His	p.P510H	ENST00000322652	NM_015355.2	510	cCt/cAt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372142	45372142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	31	395	0	ENST00000262160.6:c.1027G>A	p.Gly343Arg	p.G343R	ENST00000262160	NM_005901.5	343	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0074775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	133	667	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811776	102811776	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	38	593	1	ENST00000307046.8:c.408G>T	p.Gln136His	p.Q136H	ENST00000307046	NM_001111285.1	136	caG/caT																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81927385	81927385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	51	349	0	ENST00000359376.3:c.1058G>T	p.Cys353Phe	p.C353F	ENST00000359376	NM_002661.3	353	tGt/tTt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176104189	176104189	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	96	373	0	ENST00000367669.3:c.925G>A	p.Asp309Asn	p.D309N	ENST00000367669	NM_022457.5	309	Gat/Aat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821750	72821750	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	58	602	0	ENST00000268489.5:c.10425C>G	p.Ser3475Arg	p.S3475R	ENST00000268489	NM_006885.3	3475	agC/agG																																																																															
TP53	7157	MSKCC	GRCh37	17	7579312	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CG	CG	GT			P-0074775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	85	468	0	ENST00000269305.4:c.374_375delinsAC	p.Thr125Asn	p.T125N	ENST00000269305	NM_001126112.2	125	aCG/aAC																																																																															
RAD51	5888	MSKCC	GRCh37	15	40993367	40993367	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	54	364	0	ENST00000267868.3:c.193G>C	p.Gly65Arg	p.G65R	ENST00000267868	NM_002875.4	65	Gga/Cga																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469573	25469573	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1277241617		P-0074775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	42	551	0	ENST00000264709.3:c.1195G>A	p.Val399Met	p.V399M	ENST00000264709	NM_175629.2	399	Gtg/Atg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437161	52437161	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0074775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	115	469	0	ENST00000460680.1:c.1883C>G	p.Ser628Ter	p.S628*	ENST00000460680	NM_004656.3	628	tCa/tGa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989616	212989616	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	45	409	0	ENST00000342788.4:c.95C>A	p.Thr32Lys	p.T32K	ENST00000342788	NM_005235.2	32	aCg/aAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486035	8486035	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0074775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	188	572	0	ENST00000356435.5:c.2782G>T	p.Glu928Ter	p.E928*	ENST00000356435		928	Gaa/Taa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31019456	31019456	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0074775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	46	404	0	ENST00000375687.4:c.953A>C	p.Gln318Pro	p.Q318P	ENST00000375687	NM_015338.5	318	cAg/cCg																																																																															
IRF4	3662	MSKCC	GRCh37	6	394966	394966	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	41	495	0	ENST00000380956.4:c.362C>G	p.Pro121Arg	p.P121R	ENST00000380956	NM_001195286.1	121	cCg/cGg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12447468	12447468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	108	494	0	ENST00000287820.6:c.707C>A	p.Ser236Tyr	p.S236Y	ENST00000287820	NM_015869.4	236	tCc/tAc																																																																															
SMO	6608	MSKCC	GRCh37	7	128846208	128846208	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0074775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	120	582	0	ENST00000249373.3:c.1138C>A	p.Gln380Lys	p.Q380K	ENST00000249373	NM_005631.4	380	Cag/Aag																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61305214	61305214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	79	398	0	ENST00000341074.5:c.912G>T	p.Met304Ile	p.M304I	ENST00000341074	NM_002974.2	304	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0074778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			718	230	538	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220698	1220698	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs730881975		P-0074778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	165	339	0	ENST00000326873.7:c.716G>C	p.Trp239Ser	p.W239S	ENST00000326873	NM_000455.4	239	tGg/tCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0074778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	195	362	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
NTRK1	4914	MSKCC	GRCh37	1	156851288	156851288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	471	356	0	ENST00000524377.1:c.2245C>A	p.Pro749Thr	p.P749T	ENST00000524377	NM_002529.3	749	Cca/Aca																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514186	69514186	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	225	410	0	ENST00000294312.3:c.495C>G	p.Phe165Leu	p.F165L	ENST00000294312	NM_005117.2	165	ttC/ttG																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346415	73346415	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0074778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	65	216	0	ENST00000377767.4:c.1387-2A>G		p.X463_splice	ENST00000377767	NM_014953.3	463																																																																																
AXL	558	MSKCC	GRCh37	19	41743886	41743886	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	216	386	0	ENST00000301178.4:c.821G>T	p.Gly274Val	p.G274V	ENST00000301178	NM_021913.4	274	gGa/gTa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751598	57751598	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	194	327	0	ENST00000274289.3:c.1393G>T	p.Asp465Tyr	p.D465Y	ENST00000274289	NM_006622.3	465	Gac/Tac																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265599	152265599	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	183	301	0	ENST00000206249.3:c.1052A>T	p.Asp351Val	p.D351V	ENST00000206249	NM_000125.3	351	gAc/gTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165155	32165155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			705	200	398	0	ENST00000375023.3:c.4973C>A	p.Ala1658Asp	p.A1658D	ENST00000375023	NM_004557.3	1658	gCc/gAc																																																																															
RB1	5925	MSKCC	GRCh37	13	48955394	48955394	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs886043247		P-0074845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	275	288	0	ENST00000267163.4:c.1510C>T	p.Gln504Ter	p.Q504*	ENST00000267163	NM_000321.2	504	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131691026		P-0074845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	478	497	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																															
MDC1	9656	MSKCC	GRCh37	6	30676047	30676047	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs529970009		P-0074845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	428	464	0	ENST00000376406.3:c.2309C>T	p.Thr770Met	p.T770M	ENST00000376406	NM_014641.2	770	aCg/aTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023582	27023603	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCTGAGCTCCCCGAGAGGTG	GCGCTGAGCTCCCCGAGAGGTG	AC			P-0074845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	500	425	1	ENST00000324856.7:c.688_709delinsAC	p.Ala230ThrfsTer163	p.A230Tfs*163	ENST00000324856	NM_006015.4	230	GCGCTGAGCTCCCCGAGAGGTGgc/ACgc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115975	8116023	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	GCCATGGGTTAGAGCCCTGCTCGATGCTCACAGGGCCCCCAGCGAGAGT	GCCATGGGTTAGAGCCCTGCTCGATGCTCACAGGGCCCCCAGCGAGAGT	AC			P-0074845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	421	455	2	ENST00000346208.3:c.1321_*37delinsAC		p.*441*	ENST00000346208		441																																																																																
PTEN	5728	MSKCC	GRCh37	10	89624271	89624272	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0074845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			57	219	212	0	ENST00000371953.3:c.47_48del	p.Tyr16SerfsTer27	p.Y16Sfs*27	ENST00000371953	NM_000314.4	15	agATat/agat																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15965035	15965035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	140	469	0	ENST00000268712.3:c.5561G>A	p.Arg1854Lys	p.R1854K	ENST00000268712	NM_006311.3	1854	aGa/aAa																																																																															
ATR	545	MSKCC	GRCh37	3	142281388	142281388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			789	76	412	0	ENST00000350721.4:c.856G>C	p.Asp286His	p.D286H	ENST00000350721	NM_001184.3	286	Gac/Cac																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100429	157100464	+	inframe_deletion	In_Frame_Del	DEL	CAGGCGGCGGCGGCGGGGGCGGCGGCGGGCGGCCAG	CAGGCGGCGGCGGCGGGGGCGGCGGCGGGCGGCCAG	-			P-0074845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	74	197	0	ENST00000346085.5:c.1374_1409del	p.Ala460_Ala471del	p.A460_A471del	ENST00000346085	NM_020732.3	456	CAGGCGGCGGCGGCGGGGGCGGCGGCGGGCGGCCAG/-																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	263	408	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021727	71021727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	109	354	0	ENST00000318789.4:c.1631G>A	p.Arg544Gln	p.R544Q	ENST00000318789	NM_032682.5	544	cGa/cAa																																																																															
ATM	472	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782292		P-0077710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	104	370	0	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																																																															
HGF	3082	MSKCC	GRCh37	7	81381558	81381558	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773949476		P-0077710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	79	268	0	ENST00000222390.5:c.503G>A	p.Arg168Gln	p.R168Q	ENST00000222390	NM_000601.4	168	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	107	193	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11136143	11136143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	217	349	0	ENST00000344626.4:c.3127C>T	p.Arg1043Trp	p.R1043W	ENST00000344626	NM_003072.3	1043	Cgg/Tgg																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222212	6222212	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1237687182		P-0077710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	292	516	0	ENST00000252674.7:c.1030G>A	p.Glu344Lys	p.E344K	ENST00000252674	NM_005934.3	344	Gag/Aag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86670726	86670739	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGATATCTGTAAGT	TGATATCTGTAAGT	-			P-0077710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	39	248	0	ENST00000274376.6:c.2009_2011+11del		p.X670_splice	ENST00000274376	NM_002890.2	670																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15272487	15272487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	125	462	0	ENST00000263388.2:c.5952C>A	p.Ser1984Arg	p.S1984R	ENST00000263388	NM_000435.2	1984	agC/agA																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544833	86544833	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752504125		P-0077710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	86	436	0	ENST00000262426.4:c.658G>A	p.Gly220Ser	p.G220S	ENST00000262426	NM_001451.2	220	Ggc/Agc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557908	21557908	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	117	337	0	ENST00000382592.4:c.1937A>C	p.Lys646Thr	p.K646T	ENST00000382592	NM_014572.2	646	aAg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0048700-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			507	79	606	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206804	162206804	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1262180713		P-0048700-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			313	27	362	0	ENST00000366898.1:c.871G>T	p.Ala291Ser	p.A291S	ENST00000366898	NM_004562.2	291	Gct/Tct																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576195	88576195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048700-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			462	52	649	1	ENST00000360948.2:c.1478C>T	p.Ser493Leu	p.S493L	ENST00000360948	NM_001012338.2	493	tCa/tTa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11317024	11317024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048700-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			375	29	480	0	ENST00000361445.4:c.470G>T	p.Gly157Val	p.G157V	ENST00000361445	NM_004958.3	157	gGt/gTt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112259	115112259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048700-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			173	10	272	0	ENST00000257566.3:c.1481C>A	p.Ala494Asp	p.A494D	ENST00000257566	NM_016569.3	494	gCc/gAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112404	115112404	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048700-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			387	24	769	0	ENST00000257566.3:c.1336A>T	p.Thr446Ser	p.T446S	ENST00000257566	NM_016569.3	446	Act/Tct																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061892	38061892	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048700-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			698	63	830	0	ENST00000250448.2:c.97A>C	p.Asn33His	p.N33H	ENST00000250448	NM_004496.3	33	Aac/Cac																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632482	3632482	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048700-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			683	91	967	1	ENST00000294008.3:c.5366G>T	p.Gly1789Val	p.G1789V	ENST00000294008	NM_032444.2	1789	gGc/gTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832029	72832029	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048700-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			328	84	523	0	ENST00000268489.5:c.4552G>T	p.Gly1518Cys	p.G1518C	ENST00000268489	NM_006885.3	1518	Ggc/Tgc																																																																															
CALR	811	MSKCC	GRCh37	19	13051698	13051698	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048700-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			370	20	492	1	ENST00000316448.5:c.957G>T	p.Trp319Cys	p.W319C	ENST00000316448	NM_004343.3	319	tgG/tgT																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25458648	25458648	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048700-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			309	37	460	0	ENST00000264709.3:c.2525A>T	p.Gln842Leu	p.Q842L	ENST00000264709	NM_175629.2	842	cAg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40828028	40828028	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0048700-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			191	28	380	0	ENST00000373198.4:c.2400G>T	p.Leu800Phe	p.L800F	ENST00000373198	NM_133170.3	800	ttG/ttT																																																																															
APC	324	MSKCC	GRCh37	5	112175415	112175415	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048700-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			201	34	278	0	ENST00000257430.4:c.4124A>T	p.His1375Leu	p.H1375L	ENST00000257430	NM_000038.5	1375	cAc/cTc																																																																															
IRF4	3662	MSKCC	GRCh37	6	401518	401518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048700-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			295	24	499	0	ENST00000380956.4:c.840T>A	p.His280Gln	p.H280Q	ENST00000380956	NM_001195286.1	280	caT/caA																																																																															
MED12	9968	MSKCC	GRCh37	X	70361796	70361796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048700-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			474	32	680	0	ENST00000374080.3:c.6472C>A	p.Leu2158Ile	p.L2158I	ENST00000374080		2158	Ctt/Att																																																																															
ATRX	546	MSKCC	GRCh37	X	76938007	76938007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048700-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			431	41	579	0	ENST00000373344.5:c.2741C>T	p.Ala914Val	p.A914V	ENST00000373344	NM_000489.3	914	gCa/gTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	173	322	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0048727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	272	606	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29576111	29576111	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854560		P-0048727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	200	436	0	ENST00000358273.4:c.4084C>T	p.Arg1362Ter	p.R1362*	ENST00000358273	NM_001042492.2	1362	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	140	421	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186506946	186506946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	32	84	0	ENST00000323963.5:c.1112G>A	p.Gly371Asp	p.G371D	ENST00000323963		371	gGt/gAt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922704	44922704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	27	321	1	ENST00000377967.4:c.1565G>A	p.Gly522Glu	p.G522E	ENST00000377967	NM_021140.2	522	gGa/gAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29663906	29663906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	27	171	0	ENST00000358273.4:c.6401G>A	p.Cys2134Tyr	p.C2134Y	ENST00000358273	NM_001042492.2	2134	tGt/tAt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008036	29008036	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754160537		P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			323	36	356	0	ENST00000282397.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000282397	NM_002019.4	245	Ggc/Agc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499345	89499345	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			455	84	493	0	ENST00000336596.2:c.2515G>T	p.Glu839Ter	p.E839*	ENST00000336596	NM_005233.5	839	Gag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			505	252	593	2	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945066	31945066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			921	157	673	0	ENST00000340398.3:c.35C>A	p.Thr12Asn	p.T12N	ENST00000340398	NM_001013699.2	12	aCc/aAc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245300	41245300	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			582	198	601	0	ENST00000357654.3:c.2248C>A	p.Leu750Ile	p.L750I	ENST00000357654	NM_007294.3	750	Ctc/Atc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974769	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs760065045		P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			232	217	268	0	ENST00000304494.5:c.58G>T	p.Ala20Ser	p.A20S	ENST00000304494	NM_000077.4	20	Gcg/Tcg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515100	31515100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1199	64	539	0	ENST00000344624.3:c.1285C>G	p.Gln429Glu	p.Q429E	ENST00000344624		429	Cag/Gag																																																																															
KDR	3791	MSKCC	GRCh37	4	55987320	55987320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			384	53	448	0	ENST00000263923.4:c.105C>A	p.Ser35Arg	p.S35R	ENST00000263923	NM_002253.2	35	agC/agA																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98218695	98218696	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			274	150	420	0	ENST00000331920.6:c.3169-1_3169delinsTT		p.X1057_splice	ENST00000331920	NM_000264.3	1057																																																																																
ATM	472	MSKCC	GRCh37	11	108199749	108199749	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			184	32	266	0	ENST00000278616.4:c.7091C>T	p.Ala2364Val	p.A2364V	ENST00000278616	NM_000051.3	2364	gCa/gTa																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741683	17741683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			421	550	413	0	ENST00000250003.3:c.354G>T	p.Glu118Asp	p.E118D	ENST00000250003	NM_002478.4	118	gaG/gaT																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117753474	117753474	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			561	50	617	2	ENST00000369458.3:c.4G>T	p.Ala2Ser	p.A2S	ENST00000369458	NM_024626.3	2	Gct/Tct																																																																															
PARP1	142	MSKCC	GRCh37	1	226567636	226567636	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			474	297	672	0	ENST00000366794.5:c.1530G>T	p.Gln510His	p.Q510H	ENST00000366794	NM_001618.3	510	caG/caT																																																																															
PGR	5241	MSKCC	GRCh37	11	100999332	100999332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			690	235	989	0	ENST00000325455.5:c.470C>A	p.Thr157Asn	p.T157N	ENST00000325455	NM_001202474.3	157	aCc/aAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18658360	18658360	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			409	58	403	0	ENST00000266497.5:c.3165C>G	p.Phe1055Leu	p.F1055L	ENST00000266497		1055	ttC/ttG																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988558	36988558	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1481	176	692	0	ENST00000354822.5:c.95C>A	p.Ser32Ter	p.S32*	ENST00000354822	NM_001079668.2	32	tCg/tAg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95577713	95577713	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			356	67	402	0	ENST00000343455.3:c.2197G>C	p.Glu733Gln	p.E733Q	ENST00000343455	NM_177438.2	733	Gag/Cag																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14028139	14028139	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			175	113	462	0	ENST00000311895.7:c.1193G>C	p.Ser398Thr	p.S398T	ENST00000311895	NM_005236.2	398	aGt/aCt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100905	41100905	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			653	117	612	0	ENST00000373198.4:c.1450+1G>T		p.X484_splice	ENST00000373198	NM_133170.3	484																																																																																
TP63	8626	MSKCC	GRCh37	3	189590707	189590707	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			582	145	552	0	ENST00000264731.3:c.1272G>C	p.Met424Ile	p.M424I	ENST00000264731	NM_003722.4	424	atG/atC																																																																															
KIT	3815	MSKCC	GRCh37	4	55561765	55561765	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			468	88	422	0	ENST00000288135.5:c.155A>T	p.Asp52Val	p.D52V	ENST00000288135	NM_000222.2	52	gAc/gTc																																																																															
KDR	3791	MSKCC	GRCh37	4	55972024	55972024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			446	204	493	0	ENST00000263923.4:c.1620G>T	p.Glu540Asp	p.E540D	ENST00000263923	NM_002253.2	540	gaG/gaT																																																																															
PRDM1	639	MSKCC	GRCh37	6	106543541	106543541	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			198	69	323	0	ENST00000369096.4:c.343C>G	p.Pro115Ala	p.P115A	ENST00000369096	NM_001198.3	115	Ccc/Gcc																																																																															
CDK6	1021	MSKCC	GRCh37	7	92462502	92462502	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1290397698		P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			862	99	678	1	ENST00000265734.4:c.136C>T	p.Arg46Trp	p.R46W	ENST00000265734	NM_001259.6	46	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974763	21974768	+	inframe_deletion	In_Frame_Del	DEL	GGGCCG	GGGCCG	-			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			249	233	308	0	ENST00000304494.5:c.59_64del	p.Ala20_Arg22delinsGly	p.A20_R22delinsG	ENST00000304494	NM_000077.4	20	gCGGCCCgg/ggg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128434776	128434776	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			628	120	614	0	ENST00000265960.3:c.78G>C	p.Met26Ile	p.M26I	ENST00000265960	NM_001006617.1	26	atG/atC																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974763	21974763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			453	29	308	0	ENST00000304494.5:c.64C>T	p.Arg22Trp	p.R22W	ENST00000304494	NM_000077.4	22	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577536	+	frameshift_variant	Frame_Shift_Del	DEL	CCT	CCT	TC			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			475	300	654	2	ENST00000269305.4:c.745_747delinsGA	p.Arg249AspfsTer96	p.R249Dfs*96	ENST00000269305	NM_001126112.2	249	AGG/GA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0048889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	116	332	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252988	36252988	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	63	337	0	ENST00000300305.3:c.374del	p.Pro125GlnfsTer8	p.P125Qfs*8	ENST00000300305		125	cCa/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577579	7577579	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0048889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	123	504	0	ENST00000269305.4:c.702C>G	p.Tyr234Ter	p.Y234*	ENST00000269305	NM_001126112.2	234	taC/taG																																																																															
PARP1	142	MSKCC	GRCh37	1	226561941	226561941	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	43	412	0	ENST00000366794.5:c.2056A>T	p.Met686Leu	p.M686L	ENST00000366794	NM_001618.3	686	Atg/Ttg																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627538	14627538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	103	454	0	ENST00000254322.2:c.532G>T	p.Gly178Cys	p.G178C	ENST00000254322	NM_006145.1	178	Ggc/Tgc																																																																															
ALK	238	MSKCC	GRCh37	2	29436929	29436929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	59	443	0	ENST00000389048.3:c.3664G>A	p.Ala1222Thr	p.A1222T	ENST00000389048	NM_004304.4	1222	Gcc/Acc																																																																															
BARD1	580	MSKCC	GRCh37	2	215645700	215645700	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793050		P-0048889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	65	422	0	ENST00000260947.4:c.898C>T	p.Pro300Ser	p.P300S	ENST00000260947	NM_000465.2	300	Cct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0048958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	313	644	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112163701	112163701	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0048958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	56	280	0	ENST00000257430.4:c.1624C>T	p.Gln542Ter	p.Q542*	ENST00000257430	NM_000038.5	542	Cag/Tag																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459776	149459776	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765232439		P-0048958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	326	768	0	ENST00000286301.3:c.431G>A	p.Arg144His	p.R144H	ENST00000286301	NM_005211.3	144	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs397517201		P-0048958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	125	394	0	ENST00000263967.3:c.1637A>T	p.Gln546Leu	p.Q546L	ENST00000263967	NM_006218.2	546	cAg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112175770	112175771	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0048958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	66	300	0	ENST00000257430.4:c.4479_4480del	p.Glu1494LysfsTer19	p.E1494Kfs*19	ENST00000257430	NM_000038.5	1493	acGGaa/acaa																																																																															
APC	324	MSKCC	GRCh37	5	112175136	112175136	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	46	229	0	ENST00000257430.4:c.3845C>G	p.Ser1282Ter	p.S1282*	ENST00000257430	NM_000038.5	1282	tCa/tGa																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813315	102813315	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761462868		P-0048958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	247	588	1	ENST00000307046.8:c.374G>A	p.Arg125His	p.R125H	ENST00000307046	NM_001111285.1	125	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579462	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGGCCACG	AGGGGCCACG	-			P-0048958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	205	722	0	ENST00000269305.4:c.216_225del	p.Val73HisfsTer47	p.V73Hfs*47	ENST00000269305	NM_001126112.2	72	ccCGTGGCCCCT/cc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118871	70118871	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	147	547	0	ENST00000245479.2:c.443A>G	p.Glu148Gly	p.E148G	ENST00000245479	NM_000346.3	148	gAg/gGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0049071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	41	556	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0049071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	57	662	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402595	20402595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	76	471	0	ENST00000346618.3:c.132C>A	p.Phe44Leu	p.F44L	ENST00000346618	NM_001949.4	44	ttC/ttA																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736256	243736256	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	22	340	0	ENST00000263826.5:c.791C>A	p.Ser264Tyr	p.S264Y	ENST00000263826	NM_005465.4	264	tCc/tAc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95574663	95574663	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0049071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	11	298	0	ENST00000343455.3:c.2434C>T	p.Gln812Ter	p.Q812*	ENST00000343455	NM_177438.2	812	Cag/Tag																																																																															
CIC	23152	MSKCC	GRCh37	19	42790923	42790932	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TGTGGACGAA	TGTGGACGAA	-			P-0049071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	43	663	0	ENST00000575354.2:c.74_83del	p.Thr25AsnfsTer13	p.T25Nfs*13	ENST00000575354	NM_015125.3	23	gTGTGGACGAAt/gt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151882712	151882712	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	28	245	0	ENST00000262189.6:c.5013G>A	p.Trp1671Ter	p.W1671*	ENST00000262189	NM_170606.2	1671	tgG/tgA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0049183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	169	500	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68771344	68771344	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	126	484	3	ENST00000261769.5:c.26C>A	p.Ser9Ter	p.S9*	ENST00000261769	NM_004360.3	9	tCg/tAg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100691	8100692	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	194	889	0	ENST00000346208.3:c.668dup	p.Pro224AlafsTer79	p.P224Afs*79	ENST00000346208		222	tac/taCc																																																																															
ATM	472	MSKCC	GRCh37	11	108196845	108196845	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1479339581		P-0049183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	133	448	0	ENST00000278616.4:c.6868G>A	p.Glu2290Lys	p.E2290K	ENST00000278616	NM_000051.3	2290	Gag/Aag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120620	115120620	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	234	745	0	ENST00000257566.3:c.386G>C	p.Gly129Ala	p.G129A	ENST00000257566	NM_016569.3	129	gGa/gCa																																																																															
NF1	4763	MSKCC	GRCh37	17	29683508	29683508	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0049183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	114	368	0	ENST00000358273.4:c.7646C>G	p.Ser2549Ter	p.S2549*	ENST00000358273	NM_001042492.2	2549	tCa/tGa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881007	37881007	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775190312		P-0049183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			4708	359	885	0	ENST00000269571.5:c.2336C>T	p.Ser779Phe	p.S779F	ENST00000269571		779	tCc/tTc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554439	63554439	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2452	285	705	0	ENST00000307078.5:c.300G>C	p.Glu100Asp	p.E100D	ENST00000307078	NM_004655.3	100	gaG/gaC																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198263292	198263292	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	123	436	0	ENST00000335508.6:c.3027G>T	p.Met1009Ile	p.M1009I	ENST00000335508	NM_012433.2	1009	atG/atT																																																																															
TEK	7010	MSKCC	GRCh37	9	27192559	27192559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766717660		P-0049183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	142	577	1	ENST00000380036.4:c.1562G>A	p.Arg521His	p.R521H	ENST00000380036	NM_000459.3	521	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0049305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			527	229	610	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
LMO1	4004	MSKCC	GRCh37	11	8248573	8248573	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780757257		P-0049305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			838	93	754	1	ENST00000335790.3:c.314G>A	p.Arg105Gln	p.R105Q	ENST00000335790	NM_002315.2	105	cGg/cAg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120732	94120732	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	134	403	0	ENST00000369303.4:c.319A>T	p.Arg107Trp	p.R107W	ENST00000369303	NM_004440.3	107	Agg/Tgg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220463	1220464	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			676	296	827	0	ENST00000326873.7:c.558dup	p.Gly187ArgfsTer79	p.G187Rfs*79	ENST00000326873	NM_000455.4	186	acc/aCcc																																																																															
KIT	3815	MSKCC	GRCh37	4	55589779	55589779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			281	130	339	0	ENST00000288135.5:c.1261C>T	p.Leu421Phe	p.L421F	ENST00000288135	NM_000222.2	421	Ctc/Ttc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600015	10600015	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			650	331	759	0	ENST00000171111.5:c.1561G>C	p.Ala521Pro	p.A521P	ENST00000171111	NM_203500.1	521	Gct/Cct																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156834536	156834536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			798	232	779	1	ENST00000524377.1:c.304G>T	p.Gly102Cys	p.G102C	ENST00000524377	NM_002529.3	102	Ggt/Tgt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498388	89498388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			174	75	181	0	ENST00000336596.2:c.2360C>T	p.Pro787Leu	p.P787L	ENST00000336596	NM_005233.5	787	cCa/cTa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967332	134967332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			511	45	381	0	ENST00000398015.3:c.2671G>T	p.Val891Leu	p.V891L	ENST00000398015	NM_004441.4	891	Gtg/Ttg																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149375020	149375020	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	108	862	0	ENST00000360632.3:c.74A>T	p.Asp25Val	p.D25V	ENST00000360632	NM_015472.4	25	gAc/gTc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143066998	143066998	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			230	93	289	0	ENST00000262992.4:c.1715C>G	p.Pro572Arg	p.P572R	ENST00000262992	NM_001101669.1	572	cCa/cGa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38978707	38978707	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	72	315	0	ENST00000357387.3:c.799G>T	p.Asp267Tyr	p.D267Y	ENST00000357387	NM_152756.3	267	Gat/Tat																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564587	86564587	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138308013		P-0049305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			652	100	691	0	ENST00000274376.6:c.319G>C	p.Val107Leu	p.V107L	ENST00000274376	NM_002890.2	107	Gtt/Ctt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2951932	2951932	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0049305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			519	201	465	0	ENST00000396946.4:c.3020-2A>T		p.X1007_splice	ENST00000396946	NM_032415.4	1007																																																																																
PTEN	5728	MSKCC	GRCh37	10	89685307	89685307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	75	224	0	ENST00000371953.3:c.202T>C	p.Tyr68His	p.Y68H	ENST00000371953	NM_000314.4	68	Tac/Cac																																																																															
KDM5A	5927	MSKCC	GRCh37	12	422239	422248	+	frameshift_variant	Frame_Shift_Del	DEL	TAGCGGTCCA	TAGCGGTCCA	-			P-0049363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	27	420	0	ENST00000399788.2:c.3010_3019del	p.Trp1004LysfsTer41	p.W1004Kfs*41	ENST00000399788	NM_001042603.1	1004	TGGACCGCTAaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0049363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	52	598	0	ENST00000269305.4:c.890_891dup	p.Glu298ThrfsTer48	p.E298Tfs*48	ENST00000269305	NM_001126112.2	297	-/AC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0049509-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			968	51	735	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50917096	50917096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049509-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	74	856	0	ENST00000440232.2:c.2348C>T	p.Ser783Leu	p.S783L	ENST00000440232	NM_002691.3	783	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579359	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGTTTT			P-0049596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	319	1005	3	ENST00000269305.4:c.328_329insAAAACC	p.Phe109_Arg110insGlnAsn	p.F109_R110insQN	ENST00000269305	NM_001126112.2	110	cgt/cAAAACCgt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1632386	1632386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	142	1065	0	ENST00000344749.5:c.164G>T	p.Ser55Ile	p.S55I	ENST00000344749	NM_001136139.2	55	aGc/aTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390879	139390880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTCTC			P-0049596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	492	1411	8	ENST00000277541.6:c.7307_7311dup	p.Pro2438GlufsTer41	p.P2438Efs*41	ENST00000277541	NM_017617.3	2437	-/GAGAG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0049640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	74	747	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
JUN	3725	MSKCC	GRCh37	1	59248409	59248409	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1184098204		P-0049640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	37	472	0	ENST00000371222.2:c.334G>C	p.Glu112Gln	p.E112Q	ENST00000371222	NM_002228.3	112	Gag/Cag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564698	86564698	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	58	620	0	ENST00000274376.6:c.434del	p.Pro145LeufsTer29	p.P145Lfs*29	ENST00000274376	NM_002890.2	144	Ccc/cc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405180	139405180	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs557590721		P-0049640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	66	870	1	ENST00000277541.6:c.2665G>A	p.Gly889Ser	p.G889S	ENST00000277541	NM_017617.3	889	Ggc/Agc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11169359	11169359	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	26	386	0	ENST00000361445.4:c.7516G>C	p.Asp2506His	p.D2506H	ENST00000361445	NM_004958.3	2506	Gat/Cat																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257746	16257746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	36	391	0	ENST00000375759.3:c.5011G>A	p.Glu1671Lys	p.E1671K	ENST00000375759	NM_015001.2	1671	Gag/Aag																																																																															
CASP8	841	MSKCC	GRCh37	2	202136259	202136259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	40	420	0	ENST00000358485.4:c.503C>T	p.Ser168Leu	p.S168L	ENST00000358485	NM_001080125.1	168	tCa/tTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484233	8484233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	220	501	0	ENST00000356435.5:c.3299C>A	p.Thr1100Lys	p.T1100K	ENST00000356435		1100	aCg/aAg																																																																															
MSI2	124540	MSKCC	GRCh37	17	55704641	55704641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	72	741	0	ENST00000284073.2:c.704C>T	p.Pro235Leu	p.P235L	ENST00000284073	NM_138962.2	235	cCa/cTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29684286	29684286	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	220	343	0	ENST00000358273.4:c.7870-1G>T		p.X2624_splice	ENST00000358273	NM_001042492.2	2624																																																																																
NF1	4763	MSKCC	GRCh37	17	29665042	29665042	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	154	362	0	ENST00000358273.4:c.6705-1G>A		p.X2235_splice	ENST00000358273	NM_001042492.2	2235																																																																																
PGR	5241	MSKCC	GRCh37	11	100933447	100933447	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	61	287	0	ENST00000325455.5:c.1943T>A	p.Val648Glu	p.V648E	ENST00000325455	NM_001202474.3	648	gTg/gAg																																																																															
ATM	472	MSKCC	GRCh37	11	108163474	108163474	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	112	412	0	ENST00000278616.4:c.4565G>T	p.Gly1522Val	p.G1522V	ENST00000278616	NM_000051.3	1522	gGt/gTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433887	49433887	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	121	1025	0	ENST00000301067.7:c.7666C>G	p.Leu2556Val	p.L2556V	ENST00000301067	NM_003482.3	2556	Ctc/Gtc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433976	49433976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	113	915	1	ENST00000301067.7:c.7577C>T	p.Ala2526Val	p.A2526V	ENST00000301067	NM_003482.3	2526	gCa/gTa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637633	52637633	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	232	459	0	ENST00000394830.3:c.2683A>G	p.Thr895Ala	p.T895A	ENST00000394830	NM_018313.4	895	Aca/Gca																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143029317	143029317	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	32	204	0	ENST00000262992.4:c.2303G>C	p.Ser768Thr	p.S768T	ENST00000262992	NM_001101669.1	768	aGt/aCt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628932	187628932	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1207942250		P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	194	595	0	ENST00000441802.2:c.2050G>T	p.Ala684Ser	p.A684S	ENST00000441802	NM_005245.3	684	Gca/Tca																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523681	176523681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	307	908	1	ENST00000292408.4:c.2092C>A	p.Leu698Met	p.L698M	ENST00000292408	NM_213647.1	698	Ctg/Atg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468255	50468255	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	200	660	0	ENST00000331340.3:c.1490A>T	p.Tyr497Phe	p.Y497F	ENST00000331340	NM_006060.4	497	tAc/tTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376651	8376651	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	236	454	0	ENST00000356435.5:c.4462G>T	p.Val1488Leu	p.V1488L	ENST00000356435		1488	Gtg/Ttg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504332	8504332	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs139581216		P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	218	520	1	ENST00000356435.5:c.1751G>T	p.Arg584Leu	p.R584L	ENST00000356435		584	cGt/cTt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39937131	39937131	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	95	814	0	ENST00000378444.4:c.52G>T	p.Glu18Ter	p.E18*	ENST00000378444	NM_001123385.1	18	Gag/Tag																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123504139	123504139	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	44	375	0	ENST00000371139.4:c.315G>T	p.Lys105Asn	p.K105N	ENST00000371139	NM_001114937.2	105	aaG/aaT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106789	27106789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	220	729	0	ENST00000324856.7:c.6400C>G	p.Leu2134Val	p.L2134V	ENST00000324856	NM_006015.4	2134	Ctg/Gtg																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205254	61205281	+	frameshift_variant	Frame_Shift_Del	DEL	CCAAAAGAGCCCGCCTGCTCTATGAGAG	CCAAAAGAGCCCGCCTGCTCTATGAGAG	-			P-0049764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	49	509	0	ENST00000301761.2:c.195_222del	p.Lys66GlufsTer23	p.K66Efs*23	ENST00000301761	NM_017841.2	65	aCCAAAAGAGCCCGCCTGCTCTATGAGAGc/ac																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233378	69233378	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	98	231	0	ENST00000462284.1:c.1243G>C	p.Glu415Gln	p.E415Q	ENST00000462284	NM_002392.5	415	Gaa/Caa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569813	95569813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	109	396	0	ENST00000343455.3:c.3920G>T	p.Ser1307Ile	p.S1307I	ENST00000343455	NM_177438.2	1307	aGt/aTt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41209095	41209095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs80357123		P-0049764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	163	505	0	ENST00000357654.3:c.5251C>T	p.Arg1751Ter	p.R1751*	ENST00000357654	NM_007294.3	1751	Cga/Tga																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266965	18266965	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	140	542	2	ENST00000222254.8:c.280del	p.Arg94AlafsTer36	p.R94Afs*36	ENST00000222254	NM_005027.3	92	ggC/gg																																																																															
CD79A	973	MSKCC	GRCh37	19	42383617	42383617	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	158	567	0	ENST00000221972.3:c.392G>C	p.Arg131Thr	p.R131T	ENST00000221972	NM_021601.3	131	aGg/aCg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191378	185191378	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	209	702	0	ENST00000265026.3:c.2259G>C	p.Arg753Ser	p.R753S	ENST00000265026	NM_004721.4	753	agG/agC																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519997		P-0049956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	517	826	1	ENST00000269305.4:c.332T>A	p.Leu111Gln	p.L111Q	ENST00000269305	NM_001126112.2	111	cTg/cAg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128268652	128268652	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145885264		P-0049956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	297	891	0	ENST00000265960.3:c.1003G>A	p.Val335Ile	p.V335I	ENST00000265960	NM_001006617.1	335	Gtt/Att																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93969190	93969190	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	191	324	0	ENST00000369303.4:c.1806del	p.Pro603GlnfsTer26	p.P603Qfs*26	ENST00000369303	NM_004440.3	602	ttT/tt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0050023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			507	63	1042	1	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244664	46244664	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	20	750	0	ENST00000334344.6:c.2758C>T	p.Gln920Ter	p.Q920*	ENST00000334344	NM_152641.2	920	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599874	10599874	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	45	1103	0	ENST00000171111.5:c.1702G>T	p.Val568Phe	p.V568F	ENST00000171111	NM_203500.1	568	Gtc/Ttc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260837	16260837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			465	26	935	1	ENST00000375759.3:c.8102C>T	p.Thr2701Met	p.T2701M	ENST00000375759	NM_015001.2	2701	aCg/aTg																																																																															
SETD8	387893	MSKCC	GRCh37	12	123874031	123874031	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1447464550		P-0050023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			96	16	45	0	ENST00000330479.4:c.62C>T	p.Ala21Val	p.A21V	ENST00000330479	NM_020382.3	21	gCg/gTg																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51436084	51436084	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			304	32	559	0	ENST00000262662.1:c.44G>T	p.Arg15Met	p.R15M	ENST00000262662		15	aGg/aTg																																																																															
ALK	238	MSKCC	GRCh37	2	29436923	29436923	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	30	872	0	ENST00000389048.3:c.3670C>A	p.Leu1224Met	p.L1224M	ENST00000389048	NM_004304.4	1224	Ctg/Atg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163310199	163310199	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			201	12	622	1	ENST00000271452.3:c.652G>T	p.Glu218Ter	p.E218*	ENST00000271452	NM_145697.2	218	Gag/Tag																																																																															
CDC73	79577	MSKCC	GRCh37	1	193091340	193091340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	31	432	0	ENST00000367435.3:c.10G>A	p.Val4Met	p.V4M	ENST00000367435	NM_024529.4	4	Gtg/Atg																																																																															
PGR	5241	MSKCC	GRCh37	11	100920771	100920771	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			153	22	556	0	ENST00000325455.5:c.2377T>A	p.Ser793Thr	p.S793T	ENST00000325455	NM_001202474.3	793	Tca/Aca																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373892	118373892	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			102	13	434	1	ENST00000534358.1:c.7285A>G	p.Arg2429Gly	p.R2429G	ENST00000534358	NM_005933.3	2429	Aga/Gga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109958	115109958	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			467	103	1039	0	ENST00000257566.3:c.1920C>A	p.Tyr640Ter	p.Y640*	ENST00000257566	NM_016569.3	640	taC/taA																																																																															
DIS3	22894	MSKCC	GRCh37	13	73335921	73335921	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			155	23	530	0	ENST00000377767.4:c.2374G>C	p.Ala792Pro	p.A792P	ENST00000377767	NM_014953.3	792	Gct/Cct																																																																															
DIS3	22894	MSKCC	GRCh37	13	73343030	73343030	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			104	12	414	1	ENST00000377767.4:c.1776A>T	p.Glu592Asp	p.E592D	ENST00000377767	NM_014953.3	592	gaA/gaT																																																																															
CTCF	10664	MSKCC	GRCh37	16	67655480	67655480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			174	18	595	0	ENST00000264010.4:c.1343G>T	p.Arg448Leu	p.R448L	ENST00000264010	NM_006565.3	448	cGa/cTa																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805398	46805399	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0050023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			463	38	1330	0	ENST00000290295.7:c.557dup	p.Glu187ArgfsTer23	p.E187Rfs*23	ENST00000290295	NM_006361.5	186	gga/ggGa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291542	15291542	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1242208956		P-0050023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			479	53	1259	0	ENST00000263388.2:c.3092G>T	p.Arg1031Leu	p.R1031L	ENST00000263388	NM_000435.2	1031	cGc/cTc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45860887	45860887	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0050023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			489	78	1190	0	ENST00000391945.4:c.1307+1G>A		p.X436_splice	ENST00000391945	NM_000400.3	436																																																																																
NCOA3	8202	MSKCC	GRCh37	20	46281745	46281745	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			359	48	952	0	ENST00000371998.3:c.4192A>G	p.Ser1398Gly	p.S1398G	ENST00000371998		1398	Agc/Ggc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162176	47162176	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			190	26	649	0	ENST00000409792.3:c.3950G>T	p.Gly1317Val	p.G1317V	ENST00000409792	NM_014159.6	1317	gGg/gTg																																																																															
ATR	545	MSKCC	GRCh37	3	142172026	142172026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			236	26	678	0	ENST00000350721.4:c.7705G>A	p.Val2569Met	p.V2569M	ENST00000350721	NM_001184.3	2569	Gtg/Atg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117715464	117715464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			130	10	574	2	ENST00000368508.3:c.1025G>T	p.Gly342Val	p.G342V	ENST00000368508	NM_002944.2	342	gGa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0050392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	152	725	31	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112173251	112173251	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0050392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	12	175	0	ENST00000257430.4:c.1960C>T	p.Gln654Ter	p.Q654*	ENST00000257430	NM_000038.5	654	Caa/Taa																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137528128	137528128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	98	253	0	ENST00000367739.4:c.172G>A	p.Val58Ile	p.V58I	ENST00000367739	NM_000416.2	58	Gtt/Att																																																																															
TP53	7157	MSKCC	GRCh37	17	7579367	7579370	+	frameshift_variant	Frame_Shift_Del	DEL	TAGC	TAGC	-			P-0050537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	187	745	1	ENST00000269305.4:c.317_320del	p.Ser106ThrfsTer16	p.S106Tfs*16	ENST00000269305	NM_001126112.2	106	aGCTAc/ac																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38967492	38967492	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	72	321	0	ENST00000357387.3:c.1098T>G	p.Asp366Glu	p.D366E	ENST00000357387	NM_152756.3	366	gaT/gaG																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591107	67591121	+	inframe_deletion	In_Frame_Del	DEL	AACCAGACCTTATCC	AACCAGACCTTATCC	-			P-0050537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	47	283	0	ENST00000274335.5:c.1701_1715del	p.Pro568_Gln572del	p.P568_Q572del	ENST00000274335		567	aAACCAGACCTTATCCag/aag																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056083	26056121	+	inframe_deletion	In_Frame_Del	DEL	CCTTAGCAGCACTTTTGGCAGCTTTCTTGGGCTTCGCAA	CCTTAGCAGCACTTTTGGCAGCTTTCTTGGGCTTCGCAA	-			P-0050537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	162	441	0	ENST00000343677.2:c.536_574del	p.Val179_Lys191del	p.V179_K191del	ENST00000343677	NM_005319.3	179	gTTGCGAAGCCCAAGAAAGCTGCCAAAAGTGCTGCTAAGGct/gct																																																																															
STAG2	10735	MSKCC	GRCh37	X	123200026	123200027	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GC	GC	TT			P-0050537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	44	276	1	ENST00000218089.9:c.2098_2099delinsTT	p.Ala700Phe	p.A700F	ENST00000218089	NM_001042749.1	700	GCc/TTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0050573-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			713	269	808	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050573-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			831	236	836	2	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050573-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			689	229	759	0	ENST00000269305.4:c.811G>C	p.Glu271Gln	p.E271Q	ENST00000269305	NM_001126112.2	271	Gag/Cag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610322	10610322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050573-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			796	380	1022	0	ENST00000171111.5:c.388C>T	p.Pro130Ser	p.P130S	ENST00000171111	NM_203500.1	130	Ccc/Tcc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21553861	21553862	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0050573-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			512	104	562	0	ENST00000382592.4:c.2740_2741del	p.Leu914GlyfsTer29	p.L914Gfs*29	ENST00000382592	NM_014572.2	914	TTg/g																																																																															
B2M	567	MSKCC	GRCh37	15	45003183	45003745	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	TGTCCTCAGGATGCTTTTGGGACTATTTTTCTTACCCAGAGAATGGAGAAACCCTGCAGGGAATTCCCAAGCTGTAGTTATAAACAGAAGTTCTCCTTCTGCTAGGTAGCATTCAAAGATCTTAATCTTCTGGGTTTCCGTTTTCTCGAATGAAAAATGCAGGTCCGAGCAGTTAACTGGCTGGGGCACCATTAGCAAGTCACTTAGCATCTCTGGGGCCAGTCTGCAAAGCGAGGGGGCAGCCTTAATGTGCCTCCAGCCTGAAGTCCTAGAATGAGCGCCCGGTGTCCCAAGCTGGGGCGCGCACCCCAGATCGGAGGGCGCCGATGTACAGACAGCAAACTCACCCAGTCTAGTGCATGCCTTCTTAAACATCACGAGACTCTAAGAAAAGGAAACTGAAAACGGGAAAGTCCCTCTCTCTAACCTGGCACTGCGTCGCTGGCTTGGAGACAGGTGACGGTCCCTGCGGGCCTTGTCCTGATTGGCTGGGCACGCGTTTAATATAAGTGGAGGCGTCGCGCTGGCGGGCATTCCTGAAGCTGACAGCATTCGGGCCGAGA	TGTCCTCAGGATGCTTTTGGGACTATTTTTCTTACCCAGAGAATGGAGAAACCCTGCAGGGAATTCCCAAGCTGTAGTTATAAACAGAAGTTCTCCTTCTGCTAGGTAGCATTCAAAGATCTTAATCTTCTGGGTTTCCGTTTTCTCGAATGAAAAATGCAGGTCCGAGCAGTTAACTGGCTGGGGCACCATTAGCAAGTCACTTAGCATCTCTGGGGCCAGTCTGCAAAGCGAGGGGGCAGCCTTAATGTGCCTCCAGCCTGAAGTCCTAGAATGAGCGCCCGGTGTCCCAAGCTGGGGCGCGCACCCCAGATCGGAGGGCGCCGATGTACAGACAGCAAACTCACCCAGTCTAGTGCATGCCTTCTTAAACATCACGAGACTCTAAGAAAAGGAAACTGAAAACGGGAAAGTCCCTCTCTCTAACCTGGCACTGCGTCGCTGGCTTGGAGACAGGTGACGGTCCCTGCGGGCCTTGTCCTGATTGGCTGGGCACGCGTTTAATATAAGTGGAGGCGTCGCGCTGGCGGGCATTCCTGAAGCTGACAGCATTCGGGCCGAGA	-			P-0050573-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			0	79	3	0				ENST00000558401	NM_004048.2																																																																																	
ANKRD11	29123	MSKCC	GRCh37	16	89348800	89348800	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050573-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			714	165	869	0	ENST00000301030.4:c.4150G>C	p.Gly1384Arg	p.G1384R	ENST00000301030	NM_001256183.1	1384	Ggt/Cgt																																																																															
INSR	3643	MSKCC	GRCh37	19	7122765	7122765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050573-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			679	224	794	0	ENST00000302850.5:c.3389C>T	p.Pro1130Leu	p.P1130L	ENST00000302850	NM_000208.2	1130	cCc/cTc																																																																															
AXL	558	MSKCC	GRCh37	19	41765756	41765756	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050573-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			908	127	872	0	ENST00000301178.4:c.2632C>T	p.Gln878Ter	p.Q878*	ENST00000301178	NM_021913.4	878	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587782082		P-0050837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	138	707	1	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519930		P-0050837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	15	462	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																															
IRF4	3662	MSKCC	GRCh37	6	398917	398917	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1356308443		P-0050837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	76	624	0	ENST00000380956.4:c.727G>A	p.Glu243Lys	p.E243K	ENST00000380956	NM_001195286.1	243	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68862107	68862107	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060501244		P-0050837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	181	493	0	ENST00000261769.5:c.2195G>A	p.Arg732Gln	p.R732Q	ENST00000261769	NM_004360.3	732	cGg/cAg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508490	106508490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	61	387	0	ENST00000359195.3:c.484G>A	p.Val162Ile	p.V162I	ENST00000359195	NM_002649.2	162	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	87	277	0	ENST00000257430.4:c.4063dup	p.Ser1355PhefsTer20	p.S1355Ffs*20	ENST00000257430	NM_000038.5	1353	-/T																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291617	15291617	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150941674		P-0050837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	371	1086	5	ENST00000263388.2:c.3017G>A	p.Arg1006His	p.R1006H	ENST00000263388	NM_000435.2	1006	cGc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522119	157522119	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	123	737	0	ENST00000346085.5:c.4391del	p.Met1464SerfsTer30	p.M1464Sfs*30	ENST00000346085	NM_020732.3	1464	aTg/ag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0050927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	3374	535	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
MED12	9968	MSKCC	GRCh37	X	70360504	70360504	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	301	1087	1	ENST00000374080.3:c.6064C>T	p.Gln2022Ter	p.Q2022*	ENST00000374080		2022	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575104	48575114	+	frameshift_variant	Frame_Shift_Del	DEL	AGGTGGCCTGA	AGGTGGCCTGA	-			P-0050927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	102	312	0	ENST00000342988.3:c.298_308del	p.Arg100SerfsTer5	p.R100Sfs*5	ENST00000342988	NM_005359.5	100	AGGTGGCCTGAt/t																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138554	11138554	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	236	821	0	ENST00000344626.4:c.3310C>G	p.Gln1104Glu	p.Q1104E	ENST00000344626	NM_003072.3	1104	Caa/Gaa																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29085197	29085197	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12	16	11	0	ENST00000328354.6:c.1468G>C	p.Asp490His	p.D490H	ENST00000328354	NM_007194.3	490	Gac/Cac																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27840032	27840032	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	73	621	0	ENST00000328488.2:c.62T>A	p.Leu21Gln	p.L21Q	ENST00000328488	NM_003533.2	21	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	161	686	0	ENST00000269305.4:c.532C>G	p.His178Asp	p.H178D	ENST00000269305	NM_001126112.2	178	Cac/Gac																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	104	390	0	ENST00000347630.2:c.393G>C	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgC																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696450	47696450	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	53	342	0	ENST00000347630.2:c.373T>G	p.Phe125Val	p.F125V	ENST00000347630	NM_001007230.1	125	Ttt/Gtt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624942	9624942	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	98	316	0	ENST00000353224.5:c.35C>A	p.Ser12Tyr	p.S12Y	ENST00000353224	NM_177990.2	12	tCt/tAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0051356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	156	303	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0051356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	372	592	0	ENST00000269305.4:c.321C>G	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taG																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627654	37627654	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	151	511	1	ENST00000447079.4:c.1569G>T	p.Lys523Asn	p.K523N	ENST00000447079	NM_015083.1	523	aaG/aaT																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288306	21288306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	135	483	0	ENST00000354336.3:c.551C>T	p.Ser184Phe	p.S184F	ENST00000354336	NM_005207.3	184	tCc/tTc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11273609	11273609	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs532979867		P-0051356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	104	289	0	ENST00000361445.4:c.3132G>A	p.Met1044Ile	p.M1044I	ENST00000361445	NM_004958.3	1044	atG/atA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593387	48593387	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0051529-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			159	59	279	0	ENST00000342988.3:c.1140-2A>T		p.X380_splice	ENST00000342988	NM_005359.5	380																																																																																
HIST1H1C	3006	MSKCC	GRCh37	6	26056404	26056404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051529-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			351	106	405	0	ENST00000343677.2:c.253A>G	p.Lys85Glu	p.K85E	ENST00000343677	NM_005319.3	85	Aag/Gag																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981565	201981565	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0051529-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	158	806	0	ENST00000359651.3:c.478+1G>C		p.X160_splice	ENST00000359651		160																																																																																
SDHD	6392	MSKCC	GRCh37	11	111965564	111965564	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051529-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			180	32	222	0	ENST00000375549.3:c.350G>C	p.Gly117Ala	p.G117A	ENST00000375549	NM_003002.3	117	gGg/gCg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533469	63533469	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051529-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			600	164	808	0	ENST00000307078.5:c.1685C>G	p.Pro562Arg	p.P562R	ENST00000307078	NM_004655.3	562	cCg/cGg																																																																															
SMO	6608	MSKCC	GRCh37	7	128850333	128850333	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051529-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			415	85	700	0	ENST00000249373.3:c.1596G>C	p.Met532Ile	p.M532I	ENST00000249373	NM_005631.4	532	atG/atC																																																																															
PREX2	80243	MSKCC	GRCh37	8	68934301	68934301	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051529-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	92	485	0	ENST00000288368.4:c.367T>A	p.Cys123Ser	p.C123S	ENST00000288368	NM_024870.2	123	Tgt/Agt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970955	21971355	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCGCAGCCGCGCGCAGGTACCGTGCGACATCGCGATGGCCCAGCTCCTCAGCCAGGTCCACGGGCAGACGGCCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTT	CCGCAGCCGCGCGCAGGTACCGTGCGACATCGCGATGGCCCAGCTCCTCAGCCAGGTCCACGGGCAGACGGCCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTT	-			P-0051529-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			371	143	814	0	ENST00000304494.5:c.151-148_403del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
ELF3	1999	MSKCC	GRCh37	1	201981464	201981471	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTTGTCAG	CTTGTCAG	-			P-0051529-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			333	147	642	0	ENST00000359651.3:c.386-5_388del		p.X129_splice	ENST00000359651		129																																																																																
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0051593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	34	454	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
AGO2	27161	MSKCC	GRCh37	8	141572597	141572597	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376660302		P-0051593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	150	571	0	ENST00000220592.5:c.473C>T	p.Thr158Met	p.T158M	ENST00000220592	NM_012154.3	158	aCg/aTg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726574	46726574	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145410495		P-0051593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	73	478	0	ENST00000371975.4:c.653C>T	p.Ser218Leu	p.S218L	ENST00000371975	NM_003579.3	218	tCg/tTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991700	72991711	+	inframe_deletion	In_Frame_Del	DEL	GCCGCCGCCGCA	GCCGCCGCCGCA	-			P-0051593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	66	298	0	ENST00000268489.5:c.2334_2345del	p.Ala781_Ala784del	p.A781_A784del	ENST00000268489	NM_006885.3	778	gcTGCGGCGGCGGCg/gcg																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50481245	50481287	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTAGAAGGACGGCTCCTGGAGGATGTGAGTTCAAGGTCCACAA	GTAGAAGGACGGCTCCTGGAGGATGTGAGTTCAAGGTCCACAA	-			P-0051593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	45	418	0	ENST00000394963.4:c.631_654+19del		p.X211_splice	ENST00000394963	NM_003076.4	211																																																																																
RB1	5925	MSKCC	GRCh37	13	48916841	48916841	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1271889879		P-0051593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	30	399	0	ENST00000267163.4:c.371T>C	p.Ile124Thr	p.I124T	ENST00000267163	NM_000321.2	124	aTa/aCa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356369	66356369	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	38	447	1	ENST00000273854.3:c.1128A>T	p.Glu376Asp	p.E376D	ENST00000273854	NM_004439.5	376	gaA/gaT																																																																															
APC	324	MSKCC	GRCh37	5	112175629	112175629	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0051593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	50	345	0	ENST00000257430.4:c.4338del	p.Gln1447LysfsTer26	p.Q1447Kfs*26	ENST00000257430	NM_000038.5	1446	gcT/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	340	538	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069060	5069060	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	30	275	0	ENST00000381652.3:c.1370del	p.Asn457MetfsTer22	p.N457Mfs*22	ENST00000381652	NM_004972.3	455	acA/ac																																																																															
MTOR	2475	MSKCC	GRCh37	1	11308032	11308032	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	690	491	0	ENST00000361445.4:c.960G>T	p.Gln320His	p.Q320H	ENST00000361445	NM_004958.3	320	caG/caT																																																																															
AKT1	207	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	554	455	0	ENST00000349310.3:c.155T>A	p.Leu52His	p.L52H	ENST00000349310	NM_001014432.1	52	cTc/cAc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39542509	39542509	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	100	318	0	ENST00000262039.4:c.313C>T	p.Gln105Ter	p.Q105*	ENST00000262039	NM_002647.2	105	Caa/Taa																																																																															
KIT	3815	MSKCC	GRCh37	4	55573393	55573393	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	289	349	0	ENST00000288135.5:c.1055A>G	p.Asn352Ser	p.N352S	ENST00000288135	NM_000222.2	352	aAc/aGc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562443	95562443	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs939314926		P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	562	364	0	ENST00000343455.3:c.4814C>G	p.Pro1605Arg	p.P1605R	ENST00000343455	NM_177438.2	1605	cCt/cGt																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78426087	78426087	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	164	436	0	ENST00000370768.2:c.1438C>G	p.Pro480Ala	p.P480A	ENST00000370768	NM_003902.3	480	Cca/Gca																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115275422	115275422	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	190	344	0	ENST00000438362.2:c.991G>T	p.Gly331Ter	p.G331*	ENST00000438362	NM_001242891.1	331	Gga/Tga																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18477968	18477968	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	45	285	0	ENST00000266497.5:c.1209-1G>A		p.X403_splice	ENST00000266497		403																																																																																
PIK3C2G	5288	MSKCC	GRCh37	12	18691146	18691146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	152	340	0	ENST00000266497.5:c.3257G>T	p.Gly1086Val	p.G1086V	ENST00000266497		1086	gGg/gTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95596452	95596452	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	268	241	0	ENST00000343455.3:c.516G>T	p.Leu172Phe	p.L172F	ENST00000343455	NM_177438.2	172	ttG/ttT																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81926767	81927326	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAACACAAATTTTAAAAAAGTTGGGGTGAATCATGACAAGGAGGAAAGTGCATTAAAGAGTCATTCTTACGGCAGTTTTGGTGGATATGGCTCCTAGCATAGCCGATTGCACCAACAGTTGTTGAATATCTGTTCTGTGCCTGGCCTCAAGCCTTGATATCAAAAGAAGTGCCCATCTTTGTTTAGACCGAGGACCCAGAGAGCGGCCATGGGGCCTTGTTAATTCATCTTCTGCAGCTTTTTTTGCTTCTGACGTGCTTTGACCAACTTCTCCTCAAAAGAACACGTCCTCTCCACGCTTGCATTGCCCAGGTGGTCAGCAGTCACTTCCTGCGATTGTGGCCTGACTTCAGAGCTCATGCCCAGTGTGACCGTGGGATTGTGTATTTCTGTCCTAGGCCTTAGCTTTGAGTCTTTCTACATGGAAGAACTCAGAGCTTTGGCGGCTCGGGCGGAGAAGTTCCCCCACAACACCCTGAGGTGCAGGCTTGCCCCCCAACCCCTGTGGCTGCCACTCTCACACGGCCACCTGCCTTCTCTCCTGCAGGTACCTTACAGGT	GAACACAAATTTTAAAAAAGTTGGGGTGAATCATGACAAGGAGGAAAGTGCATTAAAGAGTCATTCTTACGGCAGTTTTGGTGGATATGGCTCCTAGCATAGCCGATTGCACCAACAGTTGTTGAATATCTGTTCTGTGCCTGGCCTCAAGCCTTGATATCAAAAGAAGTGCCCATCTTTGTTTAGACCGAGGACCCAGAGAGCGGCCATGGGGCCTTGTTAATTCATCTTCTGCAGCTTTTTTTGCTTCTGACGTGCTTTGACCAACTTCTCCTCAAAAGAACACGTCCTCTCCACGCTTGCATTGCCCAGGTGGTCAGCAGTCACTTCCTGCGATTGTGGCCTGACTTCAGAGCTCATGCCCAGTGTGACCGTGGGATTGTGTATTTCTGTCCTAGGCCTTAGCTTTGAGTCTTTCTACATGGAAGAACTCAGAGCTTTGGCGGCTCGGGCGGAGAAGTTCCCCCACAACACCCTGAGGTGCAGGCTTGCCCCCCAACCCCTGTGGCTGCCACTCTCACACGGCCACCTGCCTTCTCTCCTGCAGGTACCTTACAGGT	-			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2	32	0	0	ENST00000359376.3:c.987-545_1001del		p.X329_splice	ENST00000359376	NM_002661.3	329																																																																																
NCOR1	9611	MSKCC	GRCh37	17	15960975	15960975	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	229	288	0	ENST00000268712.3:c.6245A>C	p.Gln2082Pro	p.Q2082P	ENST00000268712	NM_006311.3	2082	cAg/cCg																																																																															
NF1	4763	MSKCC	GRCh37	17	29557870	29557870	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	95	200	0	ENST00000358273.4:c.3124G>T	p.Val1042Leu	p.V1042L	ENST00000358273	NM_001042492.2	1042	Gta/Tta																																																																															
STAT3	6774	MSKCC	GRCh37	17	40474351	40474351	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	281	370	1	ENST00000264657.5:c.2050G>T	p.Gly684Ter	p.G684*	ENST00000264657	NM_139276.2	684	Gga/Tga																																																																															
CD79B	974	MSKCC	GRCh37	17	62007658	62007659	+	missense_variant	Missense_Mutation	DNP	CT	CT	AG			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	165	467	1	ENST00000392795.3:c.208_209inv	p.Ser70Leu	p.S70L	ENST00000392795	NM_001039933.1	70	AGc/CTc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10270433	10270433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	116	530	0	ENST00000340748.4:c.1133C>T	p.Pro378Leu	p.P378L	ENST00000340748		378	cCa/cTa																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627458	14627458	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	167	454	0	ENST00000254322.2:c.612G>C	p.Leu204Phe	p.L204F	ENST00000254322	NM_006145.1	204	ttG/ttC																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288846	15288846	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	78	146	0	ENST00000263388.2:c.3893G>T	p.Cys1298Phe	p.C1298F	ENST00000263388	NM_000435.2	1298	tGc/tTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306506	41306506	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	52	284	0	ENST00000373198.4:c.1153G>T	p.Asp385Tyr	p.D385Y	ENST00000373198	NM_133170.3	385	Gat/Tat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518201	187518201	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	95	276	0	ENST00000441802.2:c.12493G>C	p.Ala4165Pro	p.A4165P	ENST00000441802	NM_005245.3	4165	Gct/Cct																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969924	161969924	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	152	407	0	ENST00000366898.1:c.1045A>G	p.Lys349Glu	p.K349E	ENST00000366898	NM_004562.2	349	Aaa/Gaa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367331	50367331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	110	304	0	ENST00000331340.3:c.138C>A	p.Ser46Arg	p.S46R	ENST00000331340	NM_006060.4	46	agC/agA																																																																															
RHEB	6009	MSKCC	GRCh37	7	151167723	151167723	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	68	266	0	ENST00000262187.5:c.396del	p.Glu133LysfsTer31	p.E133Kfs*31	ENST00000262187	NM_005614.3	132	gaA/ga																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275512	38276059	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCGGGGGAAACAGAGAGTGGCATAAGTTGGGGCTGGTGAAGTTCAAACCTTGAGAGGCACCCCATCTCCACCTCTCTGTATTTCACCCAACTGCGAGCAGAAAGTGGAATGAATGTTTCTGCAGGCATTTCATGAACCTTCACCGCCCAGAAGGTGTTAGTATACACACCTTCCACCACTAGAATAGCAAGCAAGGAATGCCTTCAAAAAGTTGGGAGTCAAAGTATTATTACCTGTCCCGAGGCAGCTCCCAGCGAGGGTCTTCGGGAAGCTCATACTCAGAGACCCCTGCTAGCATGGGAGTCCCACTGGAGGAGAGCCGTGATGGCCGAACCAGAAGAACCCCAGAGTTCATGGATGCACTGGAGTCAGCAGACACCTGCAAGGAAGAGTGGGGTCACCCTAGAGCAAGGAGGGGGGACGGGGTGACTCCTTCCCATTCTTAGTCAGGGCTTCCCAACAATGGCAGAGGCACATGTCTGTGTATCTGATGTTCTTTCCTCAACACAGAGTGGTCCAAAGACCATGGTAGGCCAGGAGGCCCAAC	TTCGGGGGAAACAGAGAGTGGCATAAGTTGGGGCTGGTGAAGTTCAAACCTTGAGAGGCACCCCATCTCCACCTCTCTGTATTTCACCCAACTGCGAGCAGAAAGTGGAATGAATGTTTCTGCAGGCATTTCATGAACCTTCACCGCCCAGAAGGTGTTAGTATACACACCTTCCACCACTAGAATAGCAAGCAAGGAATGCCTTCAAAAAGTTGGGAGTCAAAGTATTATTACCTGTCCCGAGGCAGCTCCCAGCGAGGGTCTTCGGGAAGCTCATACTCAGAGACCCCTGCTAGCATGGGAGTCCCACTGGAGGAGAGCCGTGATGGCCGAACCAGAAGAACCCCAGAGTTCATGGATGCACTGGAGTCAGCAGACACCTGCAAGGAAGAGTGGGGTCACCCTAGAGCAAGGAGGGGGGACGGGGTGACTCCTTCCCATTCTTAGTCAGGGCTTCCCAACAATGGCAGAGGCACATGTCTGTGTATCTGATGTTCTTTCCTCAACACAGAGTGGTCCAAAGACCATGGTAGGCCAGGAGGCCCAAC	-			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	120	393	0	ENST00000425967.3:c.1378-168_1524-3del		p.X460_splice	ENST00000425967	NM_001174067.1	460																																																																																
STAG2	10735	MSKCC	GRCh37	X	123220423	123220423	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	66	205	0	ENST00000218089.9:c.3080C>G	p.Thr1027Ser	p.T1027S	ENST00000218089	NM_001042749.1	1027	aCc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912660		P-0051860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	98	822	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913355		P-0051860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	53	386	0	ENST00000288602.6:c.1406G>T	p.Gly469Val	p.G469V	ENST00000288602	NM_004333.4	469	gGa/gTa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18691105	18691105	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	42	459	0	ENST00000266497.5:c.3216C>A	p.Phe1072Leu	p.F1072L	ENST00000266497		1072	ttC/ttA																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50484043	50484043	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	80	681	1	ENST00000394963.4:c.893A>T	p.Asp298Val	p.D298V	ENST00000394963	NM_003076.4	298	gAc/gTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274078	10274078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	56	850	0	ENST00000330684.3:c.191C>A	p.Pro64His	p.P64H	ENST00000330684	NM_001134407.1	64	cCc/cAc																																																																															
STK11	6794	MSKCC	GRCh37	19	1219345	1219345	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	110	707	0	ENST00000326873.7:c.397G>C	p.Val133Leu	p.V133L	ENST00000326873	NM_000455.4	133	Gtg/Ctg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587782289		P-0051869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	174	517	1	ENST00000269305.4:c.706T>C	p.Tyr236His	p.Y236H	ENST00000269305	NM_001126112.2	236	Tac/Cac																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520273	176520273	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759709290		P-0051869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	88	640	0	ENST00000292408.4:c.1192C>T	p.Arg398Trp	p.R398W	ENST00000292408	NM_213647.1	398	Cgg/Tgg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026524	48026524	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369456858		P-0051869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	36	489	0	ENST00000234420.5:c.1402C>T	p.Arg468Cys	p.R468C	ENST00000234420	NM_000179.2	468	Cgt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831629	72831629	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs117283459		P-0051869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	93	612	0	ENST00000268489.5:c.4952C>T	p.Thr1651Met	p.T1651M	ENST00000268489	NM_006885.3	1651	aCg/aTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710622	114710622	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1282664682		P-0051869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	68	454	0	ENST00000543371.1:c.107C>T	p.Ser36Leu	p.S36L	ENST00000543371	NM_001198531.1	36	tCg/tTg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382185	152382185	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	80	458	0	ENST00000206249.3:c.1295C>A	p.Ser432Ter	p.S432*	ENST00000206249	NM_000125.3	432	tCa/tAa																																																																															
JUN	3725	MSKCC	GRCh37	1	59248111	59248111	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	43	250	0	ENST00000371222.2:c.632T>G	p.Leu211Arg	p.L211R	ENST00000371222	NM_002228.3	211	cTg/cGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446857	49446857	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0051869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	88	497	0	ENST00000301067.7:c.955-2A>G		p.X319_splice	ENST00000301067	NM_003482.3	319																																																																																
PRKD1	5587	MSKCC	GRCh37	14	30103732	30103732	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	13	374	0	ENST00000331968.5:c.1206C>A	p.Asn402Lys	p.N402K	ENST00000331968	NM_002742.2	402	aaC/aaA																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16062129	16062129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	48	499	0	ENST00000268712.3:c.677C>T	p.Pro226Leu	p.P226L	ENST00000268712	NM_006311.3	226	cCt/cTt																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326568	62326568	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	A			P-0051869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	331	715	2	ENST00000482936.1:c.3493C>A	p.Gln1165Lys	p.Q1165K	ENST00000482936		1165	Caa/Aaa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515146	149515146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	71	554	0	ENST00000261799.4:c.336G>T	p.Glu112Asp	p.E112D	ENST00000261799	NM_002609.3	112	gaG/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs483352695		P-0051979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	347	561	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0051979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	73	329	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398280	25398281	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0051979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	119	423	0	ENST00000256078.4:c.38_39delinsTT	p.Gly13Val	p.G13V	ENST00000256078	NM_033360.2	13	gGC/gTT																																																																															
APC	324	MSKCC	GRCh37	5	112175588	112175588	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	155	343	0	ENST00000257430.4:c.4298del	p.Pro1433GlnfsTer40	p.P1433Qfs*40	ENST00000257430	NM_000038.5	1433	Cca/ca																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349019	89349019	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	216	706	0	ENST00000301030.4:c.3931C>T	p.Arg1311Ter	p.R1311*	ENST00000301030	NM_001256183.1	1311	Cga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201828	66201828	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779738574		P-0051979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	134	371	0	ENST00000273854.3:c.2674G>A	p.Glu892Lys	p.E892K	ENST00000273854	NM_004439.5	892	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121912651		P-0052095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	369	716	0	ENST00000269305.4:c.742C>G	p.Arg248Gly	p.R248G	ENST00000269305	NM_001126112.2	248	Cgg/Ggg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0052095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	249	662	3	ENST00000324856.7:c.3977dup	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																															
RET	5979	MSKCC	GRCh37	10	43596057	43596057	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	71	872	0	ENST00000355710.3:c.224C>A	p.Thr75Lys	p.T75K	ENST00000355710	NM_020975.4	75	aCg/aAg																																																																															
TET1	80312	MSKCC	GRCh37	10	70441196	70441196	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	40	513	0	ENST00000373644.4:c.4865del	p.Arg1622HisfsTer2	p.R1622Hfs*2	ENST00000373644	NM_030625.2	1622	cGa/ca																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562218	95562218	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	68	420	1	ENST00000343455.3:c.5039A>T	p.Lys1680Met	p.K1680M	ENST00000343455	NM_177438.2	1680	aAg/aTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222196	5222196	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0052095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	306	718	0	ENST00000357368.4:c.3139A>T	p.Lys1047Ter	p.K1047*	ENST00000357368	NM_002850.3	1047	Aag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11107035	11107038	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0052095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	276	598	0	ENST00000344626.4:c.1742_1745del	p.Lys581ArgfsTer31	p.K581Rfs*31	ENST00000344626	NM_003072.3	580	aaAAAG/aa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965237	25965237	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	470	635	0	ENST00000435504.4:c.3969A>G	p.Ile1323Met	p.I1323M	ENST00000435504		1323	atA/atG																																																																															
ALK	238	MSKCC	GRCh37	2	29754890	29754890	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	311	618	0	ENST00000389048.3:c.1045G>T	p.Val349Phe	p.V349F	ENST00000389048	NM_004304.4	349	Gtc/Ttc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138384010	138384010	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	74	576	0	ENST00000289153.2:c.2540G>C	p.Arg847Pro	p.R847P	ENST00000289153	NM_006219.2	847	cGc/cCc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169953106	169953106	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	61	531	0	ENST00000295797.4:c.190C>G	p.Gln64Glu	p.Q64E	ENST00000295797	NM_002740.5	64	Cag/Gag																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430354	181430354	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0052095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	225	479	0	ENST00000325404.1:c.206C>A	p.Ser69Ter	p.S69*	ENST00000325404	NM_003106.3	69	tCg/tAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557738	187557738	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0052095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	81	373	0	ENST00000441802.2:c.3972+1G>T		p.X1324_splice	ENST00000441802	NM_005245.3	1324																																																																																
TAP2	6891	MSKCC	GRCh37	6	32803101	32803101	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	67	798	0	ENST00000374899.4:c.775del	p.Leu259Ter	p.L259*	ENST00000374899	NM_018833.2	259	Ctg/tg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023210	150023210	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	110	534	0	ENST00000253339.5:c.53T>C	p.Phe18Ser	p.F18S	ENST00000253339		18	tTt/tCt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0052121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	11	57	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584754	48584754	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	20	427	0	ENST00000342988.3:c.833del	p.Pro278LeufsTer58	p.P278Lfs*58	ENST00000342988	NM_005359.5	278	Cct/ct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0052133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	27	480	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463181	25463181	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757823678		P-0052133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	61	625	1	ENST00000264709.3:c.2312G>A	p.Arg771Gln	p.R771Q	ENST00000264709	NM_175629.2	771	cGa/cAa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013728	12013728	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	38	426	0	ENST00000353533.5:c.673del	p.Ile225LeufsTer51	p.I225Lfs*51	ENST00000353533	NM_003010.3	224	Aaa/aa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370918	55370918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	62	785	1	ENST00000297316.4:c.220G>A	p.Ala74Thr	p.A74T	ENST00000297316	NM_022454.3	74	Gct/Act																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27022932	27022932	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	12	72	1	ENST00000324856.7:c.38T>A	p.Leu13Gln	p.L13Q	ENST00000324856	NM_006015.4	13	cTg/cAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16024570	16024570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	44	549	0	ENST00000268712.3:c.1648G>A	p.Glu550Lys	p.E550K	ENST00000268712	NM_006311.3	550	Gaa/Aaa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227887	36227887	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0052133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	34	869	0	ENST00000222270.7:c.7372+1del		p.G2458fs	ENST00000222270	NM_014727.1	2458	Gga/ga																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0052218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	117	472	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0052218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	160	732	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
E2F3	1871	MSKCC	GRCh37	6	20402540	20402540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	118	675	0	ENST00000346618.3:c.77C>T	p.Ala26Val	p.A26V	ENST00000346618	NM_001949.4	26	gCc/gTc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998873	100998968	+	inframe_deletion	In_Frame_Del	DEL	GGCAGGATAGGCACGTGGATGAAATCCATCACCGTGGTGGCCAGCGGGGAGCGCCCGGGCGCCATCGGCGCGTCCTGCTCCACCAGGGCGACCCTG	GGCAGGATAGGCACGTGGATGAAATCCATCACCGTGGTGGCCAGCGGGGAGCGCCCGGGCGCCATCGGCGCGTCCTGCTCCACCAGGGCGACCCTG	-			P-0052218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	170	1248	0	ENST00000325455.5:c.834_929del	p.Arg279_Pro310del	p.R279_P310del	ENST00000325455	NM_001202474.3	278	ccCAGGGTCGCCCTGGTGGAGCAGGACGCGCCGATGGCGCCCGGGCGCTCCCCGCTGGCCACCACGGTGATGGATTTCATCCACGTGCCTATCCTGCCt/cct																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119751	70119751	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	282	767	0	ENST00000245479.2:c.754del	p.Leu252Ter	p.L252*	ENST00000245479	NM_000346.3	251	gaC/ga																																																																															
EP300	2033	MSKCC	GRCh37	22	41544688	41545044	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATGACCTCATGAAATTGTGATTAACTCTCCTCACTTAACAGAGCATGCAAAGAAAATTACCTGCTATCCTTGTGCTAGGCATATTTGTGTACCAAGAGAATGTGTGTTCCATCCTCTTACTATTTCTTGGAGTAGGCCTAGGTAAACTGTGAGGCTATTTCTCTTTATCTTGGCACAAGAGTCAGTTGTTCTACAACTTTCTTCCTTCTCCTCTTCAGCCCTCTTCACCTATACTCCTGTCTTTGGCTTTTCTCTACTTAATAAGCCTGACGTTAGGAGCATTTGATGATTTTAGTTATAGTAGAATAACTATAATGAAGCAGTTTGGTGATTTGTGTTTTTTTTTTTTTTCAGCCT	ATGACCTCATGAAATTGTGATTAACTCTCCTCACTTAACAGAGCATGCAAAGAAAATTACCTGCTATCCTTGTGCTAGGCATATTTGTGTACCAAGAGAATGTGTGTTCCATCCTCTTACTATTTCTTGGAGTAGGCCTAGGTAAACTGTGAGGCTATTTCTCTTTATCTTGGCACAAGAGTCAGTTGTTCTACAACTTTCTTCCTTCTCCTCTTCAGCCCTCTTCACCTATACTCCTGTCTTTGGCTTTTCTCTACTTAATAAGCCTGACGTTAGGAGCATTTGATGATTTTAGTTATAGTAGAATAACTATAATGAAGCAGTTTGGTGATTTGTGTTTTTTTTTTTTTTCAGCCT	-			P-0052218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3	147	12	1	ENST00000263253.7:c.2242-351_2247del		p.X748_splice	ENST00000263253	NM_001429.3	748																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53243998	53243998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	249	557	0	ENST00000375401.3:c.995G>A	p.Arg332Gln	p.R332Q	ENST00000375401	NM_004187.3	332	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0052383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	811	798	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0052383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	124	389	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
EP300	2033	MSKCC	GRCh37	22	41513663	41513663	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0052383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	285	720	0	ENST00000263253.7:c.567T>G	p.Asn189Lys	p.N189K	ENST00000263253	NM_001429.3	189	aaT/aaG																																																																															
RAD21	5885	MSKCC	GRCh37	8	117874123	117874123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	119	436	0	ENST00000297338.2:c.331C>T	p.Pro111Ser	p.P111S	ENST00000297338	NM_006265.2	111	Cct/Tct																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0052432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	23	594	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161324	55161324	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514550		P-0052432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	73	635	0	ENST00000257290.5:c.3155C>T	p.Thr1052Met	p.T1052M	ENST00000257290	NM_006206.4	1052	aCg/aTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942122	71942123	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0052432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	71	972	0	ENST00000298229.2:c.1390dup	p.His464ProfsTer2	p.H464Pfs*2	ENST00000298229	NM_001567.3	462	-/C																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949108	71949108	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	81	1031	0	ENST00000298229.2:c.3577del	p.Ala1193ProfsTer9	p.A1193Pfs*9	ENST00000298229	NM_001567.3	1192	cGg/cg																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40678575	40678575	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs557155424		P-0052432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	88	655	0	ENST00000249776.8:c.317G>A	p.Arg106Gln	p.R106Q	ENST00000249776	NM_033286.3	106	cGg/cAg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715715	30715715	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	70	532	0	ENST00000359013.4:c.1448C>A	p.Thr483Lys	p.T483K	ENST00000359013	NM_001024847.2	483	aCa/aAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0052609-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			65	43	286	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0052609-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			17	58	469	1	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0052609-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			50	29	489	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0052609-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			15	22	185	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																																
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519989		P-0052609-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			21	31	475	0	ENST00000269305.4:c.730G>C	p.Gly244Arg	p.G244R	ENST00000269305	NM_001126112.2	244	Ggc/Cgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100988	27100988	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052609-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			58	41	573	0	ENST00000324856.7:c.4270C>T	p.Gln1424Ter	p.Q1424*	ENST00000324856	NM_006015.4	1424	Cag/Tag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482556	56482556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052609-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			74	41	440	0	ENST00000267101.3:c.1013G>A	p.Ser338Asn	p.S338N	ENST00000267101	NM_001982.3	338	aGc/aAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68847219	68847220	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0052609-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			21	41	382	0	ENST00000261769.5:c.1141_1142del	p.Lys381GlyfsTer5	p.K381Gfs*5	ENST00000261769	NM_004360.3	381	AAg/g																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115267935	115267935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052609-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			76	34	338	0	ENST00000438362.2:c.1798G>A	p.Asp600Asn	p.D600N	ENST00000438362	NM_001242891.1	600	Gat/Aat																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31380546	31380546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052609-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			48	28	615	1	ENST00000328111.2:c.1036G>A	p.Glu346Lys	p.E346K	ENST00000328111	NM_006892.3	346	Gag/Aag																																																																															
ATR	545	MSKCC	GRCh37	3	142176516	142176516	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052609-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			46	35	321	0	ENST00000350721.4:c.7585G>C	p.Glu2529Gln	p.E2529Q	ENST00000350721	NM_001184.3	2529	Gag/Cag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0052625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1191	388	711	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0052625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	365	804	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175852	112175852	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0052721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	55	383	0	ENST00000257430.4:c.4561G>T	p.Glu1521Ter	p.E1521*	ENST00000257430	NM_000038.5	1521	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	359	1103	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589629	67589630	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGATTATATGAAGAATATACCCGCACA			P-0052721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	17	414	0	ENST00000274335.5:c.1393_1419dup	p.Arg465_Thr473dup	p.R465_T473dup	ENST00000274335		465	-/AGATTATATGAAGAATATACCCGCACA																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0052865-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			619	78	595	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0052865-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			384	25	370	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584825	48584825	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G	rs746084369		P-0052865-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			388	23	309	0	ENST00000342988.3:c.903C>G	p.Tyr301Ter	p.Y301*	ENST00000342988	NM_005359.5	301	taC/taG																																																																															
SETD2	29072	MSKCC	GRCh37	3	47155395	47155395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052865-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			438	33	428	0	ENST00000409792.3:c.4686G>T	p.Trp1562Cys	p.W1562C	ENST00000409792	NM_014159.6	1562	tgG/tgT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0052888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	294	516	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112173847	112173848	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0052888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	96	214	0	ENST00000257430.4:c.2563_2564dup	p.Arg856AsnfsTer6	p.R856Nfs*6	ENST00000257430	NM_000038.5	852	-/GA																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114901003	114901004	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGAC			P-0052888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	201	491	0	ENST00000543371.1:c.615_616insACCG	p.Tyr206ThrfsTer5	p.Y206Tfs*5	ENST00000543371	NM_001198531.1	205	acg/aCGACcg																																																																															
APC	324	MSKCC	GRCh37	5	112175422	112175423	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0052888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	46	222	0	ENST00000257430.4:c.4131_4132del	p.Gln1378GlyfsTer7	p.Q1378Gfs*7	ENST00000257430	NM_000038.5	1377	gtTCag/gtag																																																																															
BRAF	673	MSKCC	GRCh37	7	140624434	140624434	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	25	83	0	ENST00000288602.6:c.70G>C	p.Glu24Gln	p.E24Q	ENST00000288602	NM_004333.4	24	Gag/Cag																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519912		P-0053002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	20	382	0	ENST00000374080.3:c.3670C>G	p.Leu1224Val	p.L1224V	ENST00000374080		1224	Ctc/Gtc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0053129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	9	392	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0053129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	174	605	4	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0053129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	67	277	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0053129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	57	395	1	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
JAK2	3717	MSKCC	GRCh37	9	5078361	5078361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	8	388	0	ENST00000381652.3:c.2048G>T	p.Arg683Ile	p.R683I	ENST00000381652	NM_004972.3	683	aGa/aTa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37676309	37676309	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	66	517	2	ENST00000447079.4:c.3064G>T	p.Asp1022Tyr	p.D1022Y	ENST00000447079	NM_015083.1	1022	Gat/Tat																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412680	63412680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	85	545	2	ENST00000330258.3:c.487C>A	p.Pro163Thr	p.P163T	ENST00000330258	NM_152424.3	163	Ccc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112155042	112155042	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs863225310		P-0053138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	156	404	0	ENST00000257430.4:c.1312+1G>A		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	292	624	0	ENST00000269305.4:c.814G>C	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ctg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982021	93982021	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867625037		P-0053138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	176	262	1	ENST00000369303.4:c.1444G>A	p.Glu482Lys	p.E482K	ENST00000369303	NM_004440.3	482	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175346	112175350	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAA	TTGAA	-			P-0053138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	41	258	0	ENST00000257430.4:c.4057_4061del	p.Glu1353PhefsTer20	p.E1353Ffs*20	ENST00000257430	NM_000038.5	1352	gTTGAA/g																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066846	30066846	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758982696		P-0053138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	226	501	1	ENST00000331968.5:c.2285G>A	p.Arg762His	p.R762H	ENST00000331968	NM_002742.2	762	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056265	27056265	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	127	541	2	ENST00000324856.7:c.1261C>T	p.Pro421Ser	p.P421S	ENST00000324856	NM_006015.4	421	Cca/Tca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420735	49420735	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	39	640	0	ENST00000301067.7:c.15014A>G	p.Asp5005Gly	p.D5005G	ENST00000301067	NM_003482.3	5005	gAt/gGt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16021264	16021264	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	127	294	0	ENST00000268712.3:c.1993T>C	p.Phe665Leu	p.F665L	ENST00000268712	NM_006311.3	665	Ttc/Ctc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619471	1619471	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0053138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	45	525	0	ENST00000344749.5:c.1170G>C	p.Gln390His	p.Q390H	ENST00000344749	NM_001136139.2	390	caG/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0053249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	186	638	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683688	162683688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	156	532	0	ENST00000366898.1:c.281G>A	p.Gly94Asp	p.G94D	ENST00000366898	NM_004562.2	94	gGc/gAc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010375	48010375	+	start_lost	Translation_Start_Site	SNP	G	G	A	rs876660095		P-0053249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	146	619	0	ENST00000234420.5:c.3G>A	p.Met1?	p.M1?	ENST00000234420	NM_000179.2	1	atG/atA																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255418	16255418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	84	379	0	ENST00000375759.3:c.2683C>T	p.Pro895Ser	p.P895S	ENST00000375759	NM_015001.2	895	Cct/Tct																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920413	114920413	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767830105		P-0053276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	105	391	0	ENST00000543371.1:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000543371	NM_001198531.1	452	Ggg/Agg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99452048	99452048	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs187980012		P-0053276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	58	321	0	ENST00000268035.6:c.1382G>A	p.Arg461His	p.R461H	ENST00000268035	NM_000875.3	461	cGc/cAc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987340	2987340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	211	531	0	ENST00000396946.4:c.89G>A	p.Arg30Gln	p.R30Q	ENST00000396946	NM_032415.4	30	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023810	27023810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	39	238	0	ENST00000324856.7:c.916C>G	p.Arg306Gly	p.R306G	ENST00000324856	NM_006015.4	306	Cgg/Ggg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	71873248	71873248	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	46	381	1	ENST00000357731.5:c.946A>T	p.Ser316Cys	p.S316C	ENST00000357731	NM_173808.2	316	Agt/Tgt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981855	201981855	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771105129		P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	381	862	1	ENST00000359651.3:c.566C>T	p.Pro189Leu	p.P189L	ENST00000359651		189	cCc/cTc																																																																															
PARP1	142	MSKCC	GRCh37	1	226579937	226579937	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1481258529		P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	124	611	1	ENST00000366794.5:c.365G>A	p.Arg122Lys	p.R122K	ENST00000366794	NM_001618.3	122	aGa/aAa																																																																															
TET1	80312	MSKCC	GRCh37	10	70404563	70404563	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	39	441	0	ENST00000373644.4:c.2077G>T	p.Glu693Ter	p.E693*	ENST00000373644	NM_030625.2	693	Gaa/Taa																																																																															
WT1	7490	MSKCC	GRCh37	11	32449502	32449502	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	118	775	2	ENST00000332351.3:c.872G>A	p.Ser291Asn	p.S291N	ENST00000332351	NM_024426.4	291	aGt/aAt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631086	69631086	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	49	546	0	ENST00000334134.2:c.324+2T>C		p.X108_splice	ENST00000334134	NM_005247.2	108																																																																																
IGF1	3479	MSKCC	GRCh37	12	102869552	102869552	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	178	562	0	ENST00000307046.8:c.89C>A	p.Ser30Ter	p.S30*	ENST00000307046	NM_001111285.1	30	tCg/tAg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112128	115112128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	163	510	0	ENST00000257566.3:c.1612G>A	p.Gly538Ser	p.G538S	ENST00000257566	NM_016569.3	538	Ggc/Agc																																																																															
POLE	5426	MSKCC	GRCh37	12	133257865	133257865	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	105	385	0	ENST00000320574.5:c.63G>T	p.Arg21Ser	p.R21S	ENST00000320574	NM_006231.2	21	agG/agT																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38614513	38614513	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	112	509	0	ENST00000299084.4:c.279G>T	p.Lys93Asn	p.K93N	ENST00000299084	NM_152594.2	93	aaG/aaT																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813807	50813812	+	frameshift_variant	Frame_Shift_Del	DEL	GTCCAC	GTCCAC	TTCTT			P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	111	733	3	ENST00000398568.2:c.1361_1366delinsTTCTT	p.Ser454IlefsTer14	p.S454Ifs*14	ENST00000398568	NM_001042412.1	454	aGTCCACcc/aTTCTTcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	143	634	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
INSR	3643	MSKCC	GRCh37	19	7267400	7267400	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	202	533	0	ENST00000302850.5:c.608G>T	p.Gly203Val	p.G203V	ENST00000302850	NM_000208.2	203	gGg/gTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11169040	11169040	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	228	637	0	ENST00000344626.4:c.4533+1G>C		p.X1511_splice	ENST00000344626	NM_003072.3	1511																																																																																
BRD4	23476	MSKCC	GRCh37	19	15366207	15366207	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	186	639	0	ENST00000263377.2:c.1948G>T	p.Asp650Tyr	p.D650Y	ENST00000263377	NM_058243.2	650	Gac/Tac																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010508	48010508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	19	191	0	ENST00000234420.5:c.136G>T	p.Gly46Trp	p.G46W	ENST00000234420	NM_000179.2	46	Ggg/Tgg																																																																															
TP63	8626	MSKCC	GRCh37	3	189584563	189584563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	33	385	0	ENST00000264731.3:c.859C>A	p.Leu287Met	p.L287M	ENST00000264731	NM_003722.4	287	Ctg/Atg																																																																															
TP63	8626	MSKCC	GRCh37	3	189587118	189587118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	72	377	0	ENST00000264731.3:c.1135C>A	p.Arg379Ser	p.R379S	ENST00000264731	NM_003722.4	379	Cgt/Agt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249505	153249505	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	121	452	1	ENST00000281708.4:c.1273T>A	p.Trp425Arg	p.W425R	ENST00000281708	NM_033632.3	425	Tgg/Agg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683610	162683610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	48	557	0	ENST00000366898.1:c.359C>A	p.Ala120Asp	p.A120D	ENST00000366898	NM_004562.2	120	gCt/gAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55220286	55220286	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1299	132	717	0	ENST00000275493.2:c.676A>T	p.Lys226Ter	p.K226*	ENST00000275493	NM_005228.3	226	Aag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81372734	81372734	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs771889279		P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	36	408	0	ENST00000222390.5:c.800C>A	p.Pro267Gln	p.P267Q	ENST00000222390	NM_000601.4	267	cCg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877938	151877938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	78	405	0	ENST00000262189.6:c.7007C>A	p.Ala2336Glu	p.A2336E	ENST00000262189	NM_170606.2	2336	gCa/gAa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68989645	68989645	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	42	529	0	ENST00000288368.4:c.1583C>A	p.Thr528Asn	p.T528N	ENST00000288368	NM_024870.2	528	aCc/aAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992992	68992992	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	54	345	0	ENST00000288368.4:c.1797T>A	p.Asn599Lys	p.N599K	ENST00000288368	NM_024870.2	599	aaT/aaA																																																																															
PREX2	80243	MSKCC	GRCh37	8	69031713	69031713	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	72	523	0	ENST00000288368.4:c.3468C>G	p.Asp1156Glu	p.D1156E	ENST00000288368	NM_024870.2	1156	gaC/gaG																																																																															
CD274	29126	MSKCC	GRCh37	9	5456129	5456129	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	40	243	0	ENST00000381577.3:c.16G>C	p.Val6Leu	p.V6L	ENST00000381577	NM_014143.3	6	Gtc/Ctc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578466	7578466	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs786202752		P-0053863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	443	991	1	ENST00000269305.4:c.464C>A	p.Thr155Asn	p.T155N	ENST00000269305	NM_001126112.2	155	aCc/aAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29004242	29004242	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766441216		P-0053863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	269	401	2	ENST00000282397.4:c.1051C>T	p.Arg351Trp	p.R351W	ENST00000282397	NM_002019.4	351	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112174437	112174437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs876658667		P-0053863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	90	244	0	ENST00000257430.4:c.3146G>A	p.Trp1049Ter	p.W1049*	ENST00000257430	NM_000038.5	1049	tGg/tAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541975	187541975	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	113	539	0	ENST00000441802.2:c.5765A>G	p.Asn1922Ser	p.N1922S	ENST00000441802	NM_005245.3	1922	aAc/aGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151848088	151848088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	214	313	0	ENST00000262189.6:c.12671C>T	p.Ser4224Phe	p.S4224F	ENST00000262189	NM_170606.2	4224	tCc/tTc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061225	38061242	+	inframe_deletion	In_Frame_Del	DEL	TCGAACATGTTGCCGGAG	TCGAACATGTTGCCGGAG	-			P-0053983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	87	660	0	ENST00000250448.2:c.747_764del	p.Asp249_Phe254del	p.D249_F254del	ENST00000250448	NM_004496.3	249	gaCTCCGGCAACATGTTCGAg/gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578464	7578476	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGCCGGGCGG	GGGTGCCGGGCGG	-	rs876659215		P-0054139-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			106	1054	761	1	ENST00000269305.4:c.454_466del	p.Pro152AlafsTer14	p.P152Afs*14	ENST00000269305	NM_001126112.2	152	CCGCCCGGCACCCgc/gc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458315	120458315	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054139-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			620	526	574	0	ENST00000256646.2:c.7030G>T	p.Glu2344Ter	p.E2344*	ENST00000256646	NM_024408.3	2344	Gaa/Taa																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217811	7217812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054139-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			411	611	584	0	ENST00000380728.2:c.199_200insT	p.Glu67ValfsTer30	p.E67Vfs*30	ENST00000380728		67	gaa/gTaa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933056	39933056	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054139-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			386	343	719	1	ENST00000378444.4:c.1543A>T	p.Ser515Cys	p.S515C	ENST00000378444	NM_001123385.1	515	Agt/Tgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1294665	1294665	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			581	126	853	4	ENST00000310581.5:c.336del	p.Glu113ArgfsTer15	p.E113Rfs*15	ENST00000310581	NM_198253.2	112	ccC/cc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			211	42	536	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			740	201	737	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			769	176	734	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250883	153250883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			143	32	444	0	ENST00000281708.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000281708	NM_033632.3	393	Cga/Tga																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			664	157	843	5	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
BCOR	54880	MSKCC	GRCh37	X	39932085	39932085	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			772	210	869	0	ENST00000378444.4:c.2514del	p.Lys839SerfsTer17	p.K839Sfs*17	ENST00000378444	NM_001123385.1	838	ccC/cc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843724	156843724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			791	232	1045	0	ENST00000524377.1:c.1150G>A	p.Glu384Lys	p.E384K	ENST00000524377	NM_002529.3	384	Gag/Aag																																																																															
MSH2	4436	MSKCC	GRCh37	2	47693887	47693887	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587778523		P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			93	16	331	0	ENST00000233146.2:c.1601G>A	p.Arg534His	p.R534H	ENST00000233146	NM_000251.2	534	cGt/cAt																																																																															
PGR	5241	MSKCC	GRCh37	11	100999006	100999006	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1333528332		P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			580	161	884	0	ENST00000325455.5:c.796G>A	p.Ala266Thr	p.A266T	ENST00000325455	NM_001202474.3	266	Gcc/Acc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104263974	104263974	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			494	128	638	5	ENST00000369902.3:c.71del	p.Pro24ArgfsTer72	p.P24Rfs*72	ENST00000369902	NM_016169.3	22	gCc/gc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991949	72991949	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs757302188		P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			579	176	759	1	ENST00000268489.5:c.2096del	p.Gly699AlafsTer125	p.G699Afs*125	ENST00000268489	NM_006885.3	699	gGc/gc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			812	79	1069	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			181	42	412	0	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351595	89351595	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			497	151	688	1	ENST00000301030.4:c.1355del	p.Asn452IlefsTer3	p.N452Ifs*3	ENST00000301030	NM_001256183.1	452	aAt/at																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399876	139399876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369915496		P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			641	173	830	0	ENST00000277541.6:c.4472C>T	p.Thr1491Met	p.T1491M	ENST00000277541	NM_017617.3	1491	aCg/aTg																																																																															
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			272	25	468	1	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211899	36211899	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			794	158	835	2	ENST00000222270.7:c.1656del	p.Lys553AsnfsTer52	p.K553Nfs*52	ENST00000222270	NM_014727.1	550	gaC/ga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341261	8341261	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759691127		P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			218	43	579	0	ENST00000356435.5:c.4955C>T	p.Ala1652Val	p.A1652V	ENST00000356435		1652	gCc/gTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180049755	180049755	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776380290		P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			675	39	624	0	ENST00000261937.6:c.1633C>T	p.Arg545Trp	p.R545W	ENST00000261937	NM_182925.4	545	Cgg/Tgg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120100	70120100	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			579	180	816	0	ENST00000245479.2:c.1102C>T	p.Gln368Ter	p.Q368*	ENST00000245479	NM_000346.3	368	Cag/Tag																																																																															
CASP8	841	MSKCC	GRCh37	2	202150001	202150001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			714	161	795	0	ENST00000358485.4:c.1442T>C	p.Ile481Thr	p.I481T	ENST00000358485	NM_001080125.1	481	aTc/aCc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258735	16258735	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			747	209	980	1	ENST00000375759.3:c.6005del	p.Asn2002MetfsTer20	p.N2002Mfs*20	ENST00000375759	NM_015001.2	2000	ggA/gg																																																																															
ETV6	2120	MSKCC	GRCh37	12	11905432	11905432	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34966596		P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			651	42	531	0	ENST00000396373.4:c.82G>A	p.Ala28Thr	p.A28T	ENST00000396373	NM_001987.4	28	Gct/Act																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057933	27057933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			936	101	929	0	ENST00000324856.7:c.1641C>A	p.Ser547Arg	p.S547R	ENST00000324856	NM_006015.4	547	agC/agA																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984451	201984451	+	stop_lost	Nonstop_Mutation	SNP	A	A	G	rs1314587735		P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			733	120	710	0	ENST00000359651.3:c.1116A>G	p.Ter372TrpextTer43	p.*372Wext*43	ENST00000359651		372	tgA/tgG																																																																															
IL10	3586	MSKCC	GRCh37	1	206942003	206942003	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	36	478	0	ENST00000423557.1:c.515T>C	p.Met172Thr	p.M172T	ENST00000423557	NM_000572.2	172	aTg/aCg																																																																															
CCND1	595	MSKCC	GRCh37	11	69456148	69456148	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753863475		P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			835	80	872	0	ENST00000227507.2:c.67C>T	p.Leu23Phe	p.L23F	ENST00000227507	NM_053056.2	23	Ctc/Ttc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643756	38643756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			581	163	654	0	ENST00000299084.4:c.1226C>A	p.Ala409Asp	p.A409D	ENST00000299084	NM_152594.2	409	gCt/gAt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99456477	99456477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			621	164	701	0	ENST00000268035.6:c.1794G>T	p.Lys598Asn	p.K598N	ENST00000268035	NM_000875.3	598	aaG/aaT																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7984272	7984272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			654	185	772	1	ENST00000319144.4:c.457C>A	p.Leu153Met	p.L153M	ENST00000319144	NM_001139.2	153	Ctg/Atg																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38788581	38788581	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753397709		P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			462	141	530	0	ENST00000348513.6:c.580G>A	p.Ala194Thr	p.A194T	ENST00000348513	NM_003079.4	194	Gcc/Acc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40441475	40441475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			604	194	636	0	ENST00000345506.4:c.46C>T	p.Arg16Cys	p.R16C	ENST00000345506	NM_003152.3	16	Cgc/Tgc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39609397	39609397	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			303	95	441	0	ENST00000262039.4:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000262039	NM_002647.2	567	Aag/Gag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271817	15271817	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1222453157		P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			769	204	1079	0	ENST00000263388.2:c.6622C>T	p.Pro2208Ser	p.P2208S	ENST00000263388	NM_000435.2	2208	Ccc/Tcc																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47601043	47601043	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			696	55	608	0	ENST00000263735.4:c.281T>G	p.Leu94Arg	p.L94R	ENST00000263735	NM_002354.2	94	cTt/cGt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212286823	212286823	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			153	23	467	0	ENST00000342788.4:c.2873T>G	p.Met958Arg	p.M958R	ENST00000342788	NM_005235.2	958	aTg/aGg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31368136	31368136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			651	152	862	0	ENST00000328111.2:c.7G>A	p.Gly3Arg	p.G3R	ENST00000328111	NM_006892.3	3	Gga/Aga																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138407782	138407782	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	103	512	0	ENST00000289153.2:c.2071T>A	p.Phe691Ile	p.F691I	ENST00000289153	NM_006219.2	691	Ttt/Att																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149238663	149238663	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			402	131	601	1	ENST00000360632.3:c.1132G>T	p.Asp378Tyr	p.D378Y	ENST00000360632	NM_015472.4	378	Gac/Tac																																																																															
ALB	213	MSKCC	GRCh37	4	74279161	74279162	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			273	75	559	0	ENST00000295897.4:c.872dup	p.Asn291LysfsTer8	p.N291Kfs*8	ENST00000295897	NM_000477.5	290	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112175022	112175022	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			290	83	493	0	ENST00000257430.4:c.3734del	p.Lys1245ArgfsTer20	p.K1245Rfs*20	ENST00000257430	NM_000038.5	1244	cAa/ca																																																																															
FLT4	2324	MSKCC	GRCh37	5	180076530	180076530	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1356792862		P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			812	90	1237	0	ENST00000261937.6:c.16G>A	p.Ala6Thr	p.A6T	ENST00000261937	NM_182925.4	6	Gcg/Acg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797759	32797759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			752	60	748	0	ENST00000374899.4:c.1743G>T	p.Gln581His	p.Q581H	ENST00000374899	NM_018833.2	581	caG/caT																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38173510	38173510	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752707421		P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			326	75	533	0	ENST00000317025.8:c.1906G>A	p.Ala636Thr	p.A636T	ENST00000317025	NM_023034.1	636	Gcc/Acc																																																																															
NBN	4683	MSKCC	GRCh37	8	90967683	90967683	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			153	18	413	0	ENST00000265433.3:c.1225del	p.Thr409GlnfsTer16	p.T409Qfs*16	ENST00000265433	NM_002485.4	409	Aca/ca																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87317093	87317093	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			441	49	545	0	ENST00000277120.3:c.232A>G	p.Arg78Gly	p.R78G	ENST00000277120		78	Agg/Ggg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139404325	139404325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			722	190	973	0	ENST00000277541.6:c.2829G>T	p.Glu943Asp	p.E943D	ENST00000277541	NM_017617.3	943	gaG/gaT																																																																															
GATA1	2623	MSKCC	GRCh37	X	48649611	48649611	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			585	155	754	0	ENST00000376670.3:c.95T>C	p.Val32Ala	p.V32A	ENST00000376670	NM_002049.3	32	gTt/gCt																																																																															
BTK	695	MSKCC	GRCh37	X	100608957	100608957	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			484	42	530	0	ENST00000308731.7:c.1651T>C	p.Tyr551His	p.Y551H	ENST00000308731	NM_000061.2	551	Tac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0054455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	253	652	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175175	112175175	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	176	222	0	ENST00000257430.4:c.3885del	p.Ala1296GlnfsTer9	p.A1296Qfs*9	ENST00000257430	NM_000038.5	1295	gAa/ga																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852605	63852605	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	155	527	0	ENST00000279873.7:c.3383G>C	p.Arg1128Thr	p.R1128T	ENST00000279873	NM_032199.2	1128	aGa/aCa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435301	110435303	+	missense_variant	Missense_Mutation	ONP	GTG	GTG	AGC			P-0054455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	59	120	0	ENST00000375856.3:c.3098_3100delinsGCT	p.Pro1033_Pro1034delinsArgSer	p.P1033_P1034delinsRS	ENST00000375856	NM_003749.2	1033	cCACcg/cGCTcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576888	7576888	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0054600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	125	1020	0	ENST00000269305.4:c.958A>T	p.Lys320Ter	p.K320*	ENST00000269305	NM_001126112.2	320	Aag/Tag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509367	106509367	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	182	887	0	ENST00000359195.3:c.1361C>A	p.Ser454Tyr	p.S454Y	ENST00000359195	NM_002649.2	454	tCc/tAc																																																																															
MET	4233	MSKCC	GRCh37	7	116412023	116412023	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	322	953	0	ENST00000397752.3:c.3008A>T	p.Tyr1003Phe	p.Y1003F	ENST00000397752	NM_000245.2	1003	tAc/tTc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228340	53228340	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0054600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	64	743	0	ENST00000375401.3:c.2062G>T	p.Gly688Cys	p.G688C	ENST00000375401	NM_004187.3	688	Ggt/Tgt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89462330	89462330	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	89	675	0	ENST00000336596.2:c.1802C>A	p.Thr601Lys	p.T601K	ENST00000336596	NM_005233.5	601	aCa/aAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578502	7578502	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	57	1309	1	ENST00000269305.4:c.428del	p.Val143GlyfsTer27	p.V143Gfs*27	ENST00000269305	NM_001126112.2	143	gTg/gg																																																																															
MET	4233	MSKCC	GRCh37	7	116397759	116397760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0054600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	118	786	0	ENST00000397752.3:c.2034dup	p.Gly679TrpfsTer10	p.G679Wfs*10	ENST00000397752	NM_000245.2	678	act/acTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0054839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	355	856	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0054839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	112	425	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
SETD8	387893	MSKCC	GRCh37	12	123874011	123874013	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs780061449		P-0054839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	10	53	0	ENST00000330479.4:c.62_64del	p.Ala21del	p.A21del	ENST00000330479	NM_020382.3	14	gaGGCg/gag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106882	27106882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	453	807	0	ENST00000324856.7:c.6493G>A	p.Glu2165Lys	p.E2165K	ENST00000324856	NM_006015.4	2165	Gag/Aag																																																																															
AGO2	27161	MSKCC	GRCh37	8	141572507	141572567	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTGCAGGGGAGTCCCCCGCCCTTGGTCCCGTGTGGCGCCCTCACCTCATGGATGGCAAGT	GCTGCAGGGGAGTCCCCCGCCCTTGGTCCCGTGTGGCGCCCTCACCTCATGGATGGCAAGT	-			P-0054839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	98	417	0	ENST00000220592.5:c.503_518+45del		p.X168_splice	ENST00000220592	NM_012154.3	168																																																																																
RARA	5914	MSKCC	GRCh37	17	38511575	38511575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866375031		P-0055025-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			820	90	778	0	ENST00000254066.5:c.1073C>T	p.Ala358Val	p.A358V	ENST00000254066	NM_000964.3	358	gCg/gTg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12006373	12006373	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055025-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			471	85	411	0	ENST00000396373.4:c.341A>G	p.Tyr114Cys	p.Y114C	ENST00000396373	NM_001987.4	114	tAt/tGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828131	72828131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055025-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			612	62	705	0	ENST00000268489.5:c.8450C>T	p.Ser2817Phe	p.S2817F	ENST00000268489	NM_006885.3	2817	tCc/tTc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30325990	30325990	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055025-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			385	65	315	0	ENST00000322652.5:c.2188G>C	p.Val730Leu	p.V730L	ENST00000322652	NM_015355.2	730	Gtt/Ctt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276777	15276777	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0055025-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			670	95	908	1	ENST00000263388.2:c.5488C>T	p.Gln1830Ter	p.Q1830*	ENST00000263388	NM_000435.2	1830	Cag/Tag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52595922	52595922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055025-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			818	67	668	1	ENST00000394830.3:c.3993G>A	p.Met1331Ile	p.M1331I	ENST00000394830	NM_018313.4	1331	atG/atA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509997	187509997	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0055025-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			537	42	548	0	ENST00000441802.2:c.13516A>T	p.Thr4506Ser	p.T4506S	ENST00000441802	NM_005245.3	4506	Act/Tct																																																																															
IL7R	3575	MSKCC	GRCh37	5	35861032	35861032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055025-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			569	48	417	0	ENST00000303115.3:c.161C>T	p.Ser54Leu	p.S54L	ENST00000303115	NM_002185.3	54	tCa/tTa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53246447	53246448	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0055025-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			240	123	378	0	ENST00000375401.3:c.534dup	p.Arg179ThrfsTer4	p.R179Tfs*4	ENST00000375401	NM_004187.3	178	-/A																																																																															
AR	367	MSKCC	GRCh37	X	66766333	66766333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055025-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			82	22	128	0	ENST00000374690.3:c.1345C>A	p.Pro449Thr	p.P449T	ENST00000374690	NM_000044.3	449	Ccg/Acg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578181	7578207	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCTCATAGGGCACCACCACACTA	GGCGGCTCATAGGGCACCACCACACTA	C			P-0055025-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			576	147	727	0	ENST00000269305.4:c.642_668delinsG	p.His214GlnfsTer2	p.H214Qfs*2	ENST00000269305	NM_001126112.2	214	caTAGTGTGGTGGTGCCCTATGAGCCGCCt/caGt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52719287	52719287	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760606403		P-0055173-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			716	89	474	0	ENST00000322088.6:c.953G>A	p.Arg318Gln	p.R318Q	ENST00000322088	NM_014225.5	318	cGg/cAg																																																																															
CCND1	595	MSKCC	GRCh37	11	69458683	69458684	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0055173-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			837	63	484	0	ENST00000227507.2:c.498_499del	p.Lys167AsnfsTer73	p.K167Nfs*73	ENST00000227507	NM_053056.2	166	tcCAaa/tcaa																																																																															
NF2	4771	MSKCC	GRCh37	22	30077494	30077494	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055173-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	74	332	0	ENST00000338641.4:c.1642del	p.Ala548ProfsTer2	p.A548Pfs*2	ENST00000338641	NM_000268.3	547	gaG/ga																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056484	26056484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs550065694		P-0055173-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	31	214	0	ENST00000343677.2:c.173C>T	p.Ser58Phe	p.S58F	ENST00000343677	NM_005319.3	58	tCt/tTt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411216	63411216	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778026		P-0055397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	181	635	0	ENST00000330258.3:c.1951G>A	p.Val651Ile	p.V651I	ENST00000330258	NM_152424.3	651	Gtc/Atc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435086	49435086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	100	568	0	ENST00000301067.7:c.6467C>T	p.Pro2156Leu	p.P2156L	ENST00000301067	NM_003482.3	2156	cCt/cTt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112516	115112517	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0055397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	222	619	0	ENST00000257566.3:c.1223dup	p.Ser409GlnfsTer12	p.S409Qfs*12	ENST00000257566	NM_016569.3	408	ggc/ggGc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993464	72993464	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	111	663	0	ENST00000268489.5:c.581T>C	p.Ile194Thr	p.I194T	ENST00000268489	NM_006885.3	194	aTc/aCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577565	7577566	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0055397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	403	520	0	ENST00000269305.4:c.715_716del	p.Asn239GlnfsTer24	p.N239Qfs*24	ENST00000269305	NM_001126112.2	239	AAc/c																																																																															
TOP1	7150	MSKCC	GRCh37	20	39750369	39750369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	57	310	0	ENST00000361337.2:c.1984C>T	p.Arg662Trp	p.R662W	ENST00000361337	NM_003286.2	662	Cgg/Tgg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620443	52620443	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0055397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	73	383	0	ENST00000394830.3:c.3310A>G	p.Lys1104Glu	p.K1104E	ENST00000394830	NM_018313.4	1104	Aag/Gag																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0055491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	123	332	0	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061141	38061149	+	inframe_deletion	In_Frame_Del	DEL	CCGCTTCCG	CCGCTTCCG	-			P-0055491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	91	162	0	ENST00000250448.2:c.840_848del	p.Ser280_Gly283delinsArg	p.S280_G283delinsR	ENST00000250448	NM_004496.3	280	agCGGAAGCGGg/agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579410	7579410	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	199	763	0	ENST00000269305.4:c.277del	p.Leu93CysfsTer30	p.L93Cfs*30	ENST00000269305	NM_001126112.2	93	Ctg/tg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624199	89624349	+	splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	CTTTTTCTTCAGCCACAGGCTCCCAGACATGACAGCCATCATCAAAGAGATCGTTAGCAGAAACAAAAGGAGATATCAAGAGGATGGATTCGACTTAGACTTGACCTGTATCCATTTCTGCGGCTGCTCCTCTTTACCTTTCTGTCACTCT	CTTTTTCTTCAGCCACAGGCTCCCAGACATGACAGCCATCATCAAAGAGATCGTTAGCAGAAACAAAAGGAGATATCAAGAGGATGGATTCGACTTAGACTTGACCTGTATCCATTTCTGCGGCTGCTCCTCTTTACCTTTCTGTCACTCT	-			P-0055520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	11	67	0	ENST00000371953.3:c.-25_79+47del		p.X9_splice	ENST00000371953	NM_000314.4	9																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5223030	5223030	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	45	410	0	ENST00000357368.4:c.2773G>C	p.Glu925Gln	p.E925Q	ENST00000357368	NM_002850.3	925	Gag/Cag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413096	139413096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	56	842	0	ENST00000277541.6:c.1046C>G	p.Thr349Ser	p.T349S	ENST00000277541	NM_017617.3	349	aCc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0055533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	134	846	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0055533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	100	582	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663346	227663346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1024227751		P-0055533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	57	564	0	ENST00000305123.5:c.109G>A	p.Glu37Lys	p.E37K	ENST00000305123	NM_005544.2	37	Gag/Aag																																																																															
STK11	6794	MSKCC	GRCh37	19	1219381	1219381	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0055533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	96	474	0	ENST00000326873.7:c.433G>T	p.Glu145Ter	p.E145*	ENST00000326873	NM_000455.4	145	Gag/Tag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401856	139401856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	130	811	0	ENST00000277541.6:c.3544G>A	p.Glu1182Lys	p.E1182K	ENST00000277541	NM_017617.3	1182	Gag/Aag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344036	118344036	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	30	369	0	ENST00000534358.1:c.2162G>C	p.Arg721Pro	p.R721P	ENST00000534358	NM_005933.3	721	cGa/cCa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95595882	95595882	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	37	353	0	ENST00000343455.3:c.661G>C	p.Glu221Gln	p.E221Q	ENST00000343455	NM_177438.2	221	Gaa/Caa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43767824	43767824	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0055533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	81	548	0	ENST00000382044.4:c.1024A>C	p.Thr342Pro	p.T342P	ENST00000382044	NM_001141980.1	342	Acc/Ccc																																																																															
TP53	7157	MSKCC	GRCh37	17	7572947	7572947	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	51	485	0	ENST00000269305.4:c.1162G>C	p.Glu388Gln	p.E388Q	ENST00000269305	NM_001126112.2	388	Gaa/Caa																																																																															
NF1	4763	MSKCC	GRCh37	17	29560161	29560161	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	51	285	0	ENST00000358273.4:c.3638C>G	p.Thr1213Arg	p.T1213R	ENST00000358273	NM_001042492.2	1213	aCa/aGa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59885962	59885962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	66	474	0	ENST00000259008.2:c.784G>A	p.Glu262Lys	p.E262K	ENST00000259008	NM_032043.2	262	Gag/Aag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120362	70120362	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	140	723	0	ENST00000245479.2:c.1364del	p.Ala455GlyfsTer15	p.A455Gfs*15	ENST00000245479	NM_000346.3	455	gCg/gg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2164242	2164242	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	65	429	0	ENST00000398665.3:c.59A>C	p.Tyr20Ser	p.Y20S	ENST00000398665	NM_032482.2	20	tAc/tCc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11095003	11095004	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0055533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	128	887	0	ENST00000344626.4:c.180dup	p.Pro61AlafsTer21	p.P61Afs*21	ENST00000344626	NM_003072.3	59	cag/caGg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18968241	18968241	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	107	802	0	ENST00000262803.5:c.2081G>T	p.Arg694Leu	p.R694L	ENST00000262803	NM_002911.3	694	cGg/cTg																																																																															
PARK2	5071	MSKCC	GRCh37	6	161990423	161990423	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0055533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	38	459	1	ENST00000366898.1:c.897A>T	p.Lys299Asn	p.K299N	ENST00000366898	NM_004562.2	299	aaA/aaT																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956778	68956778	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	53	580	0	ENST00000288368.4:c.896G>C	p.Arg299Pro	p.R299P	ENST00000288368	NM_024870.2	299	cGg/cCg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591085	67591085	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519839		P-0055542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	89	288	1	ENST00000274335.5:c.1678G>T	p.Asp560Tyr	p.D560Y	ENST00000274335		560	Gac/Tac																																																																															
POLE	5426	MSKCC	GRCh37	12	133263850	133263850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	48	326	0	ENST00000320574.5:c.52G>A	p.Glu18Lys	p.E18K	ENST00000320574	NM_006231.2	18	Gag/Aag																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502264	186502264	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0055542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	46	376	0	ENST00000323963.5:c.73G>C	p.Glu25Gln	p.E25Q	ENST00000323963		25	Gag/Cag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164142	47164142	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0055542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	19	342	0	ENST00000409792.3:c.1984C>T	p.Gln662Ter	p.Q662*	ENST00000409792	NM_014159.6	662	Caa/Taa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910239	50910239	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0055542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	58	539	0	ENST00000440232.2:c.1495-1G>A		p.X499_splice	ENST00000440232	NM_002691.3	499																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134670334	134670334	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	78	538	0	ENST00000398015.3:c.245C>G	p.Ala82Gly	p.A82G	ENST00000398015	NM_004441.4	82	gCc/gGc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399991	139399991	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746144524		P-0055542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	58	972	0	ENST00000277541.6:c.4357G>A	p.Glu1453Lys	p.E1453K	ENST00000277541	NM_017617.3	1453	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16248841	16248841	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	27	405	0	ENST00000375759.3:c.1847G>C	p.Arg616Thr	p.R616T	ENST00000375759	NM_015001.2	616	aGa/aCa																																																																															
RIT1	6016	MSKCC	GRCh37	1	155870376	155870376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	69	567	0	ENST00000368323.3:c.463G>A	p.Glu155Lys	p.E155K	ENST00000368323	NM_006912.5	155	Gaa/Aaa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123310884	123310884	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200766273		P-0055542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	82	642	1	ENST00000358487.5:c.544G>A	p.Gly182Arg	p.G182R	ENST00000358487	NM_000141.4	182	Ggg/Agg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444764	49444764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	111	928	1	ENST00000301067.7:c.2702C>T	p.Ser901Phe	p.S901F	ENST00000301067	NM_003482.3	901	tCt/tTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603114	48603114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	51	531	0	ENST00000342988.3:c.1415C>T	p.Pro472Leu	p.P472L	ENST00000342988	NM_005359.5	472	cCa/cTa																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46609717	46609717	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765717751		P-0055542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	59	885	0	ENST00000263734.3:c.2441C>T	p.Ser814Leu	p.S814L	ENST00000263734	NM_001430.4	814	tCg/tTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662539	227662539	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	62	799	0	ENST00000305123.5:c.916G>C	p.Glu306Gln	p.E306Q	ENST00000305123	NM_005544.2	306	Gag/Cag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017163	31017163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	48	377	0	ENST00000375687.4:c.494C>T	p.Thr165Ile	p.T165I	ENST00000375687	NM_015338.5	165	aCt/aTt																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326162	62326162	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs116768542		P-0055542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1332	109	1045	1	ENST00000482936.1:c.3178G>A	p.Val1060Met	p.V1060M	ENST00000482936		1060	Gtg/Atg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12650348	12650348	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	48	584	0	ENST00000251849.4:c.498G>C	p.Gln166His	p.Q166H	ENST00000251849	NM_002880.3	166	caG/caC																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38968075	38968075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	10	368	0	ENST00000357387.3:c.1030G>A	p.Glu344Lys	p.E344K	ENST00000357387	NM_152756.3	344	Gag/Aag																																																																															
EP300	2033	MSKCC	GRCh37	22	41566507	41566507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0055716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	214	355	1	ENST00000263253.7:c.4384C>T	p.Arg1462Ter	p.R1462*	ENST00000263253	NM_001429.3	1462	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577095	7577095	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519984		P-0055716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	413	773	0	ENST00000269305.4:c.843C>G	p.Asp281Glu	p.D281E	ENST00000269305	NM_001126112.2	281	gaC/gaG																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111493	8111494	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0055716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	334	741	0	ENST00000346208.3:c.981_982del	p.Trp328GlufsTer23	p.W328Efs*23	ENST00000346208		327	CTc/c																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492725	56492725	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1478237679		P-0055716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1526	508	564	0	ENST00000407977.2:c.214G>A	p.Val72Ile	p.V72I	ENST00000407977		72	Gtt/Att																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367306	50367306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	116	513	0	ENST00000331340.3:c.113C>T	p.Ser38Phe	p.S38F	ENST00000331340	NM_006060.4	38	tCc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0055952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	41	330	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1188	53	901	0	ENST00000269305.4:c.379T>C	p.Ser127Pro	p.S127P	ENST00000269305	NM_001126112.2	127	Tcc/Ccc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660548		P-0056105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	365	847	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103513879	103513879	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0056105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	114	294	0	ENST00000355739.4:c.695A>T	p.Tyr232Phe	p.Y232F	ENST00000355739	NM_000123.3	232	tAc/tTc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682443	37682443	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	218	464	0	ENST00000447079.4:c.3634G>C	p.Val1212Leu	p.V1212L	ENST00000447079	NM_015083.1	1212	Gtt/Ctt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244669	41244669	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	252	659	0	ENST00000357654.3:c.2879del	p.Gly960AlafsTer40	p.G960Afs*40	ENST00000357654	NM_007294.3	960	gGc/gc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78681752	78681763	+	inframe_deletion	In_Frame_Del	DEL	GGGGTGCCCCGG	GGGGTGCCCCGG	-			P-0056105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	270	692	0	ENST00000306801.3:c.460_471del	p.Gly154_Arg157del	p.G154_R157del	ENST00000306801	NM_020761.2	154	GGGGTGCCCCGG/-																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182630	99182630	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0056105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	144	473	0	ENST00000074304.5:c.2433G>T	p.Glu811Asp	p.E811D	ENST00000074304	NM_001134224.1	811	gaG/gaT																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46255846	46255846	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	149	364	0	ENST00000371998.3:c.458T>C	p.Val153Ala	p.V153A	ENST00000371998		153	gTt/gCt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527299	157527299	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0056105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	109	266	0	ENST00000346085.5:c.5026-2A>T		p.X1676_splice	ENST00000346085	NM_020732.3	1676																																																																																
LMO1	4004	MSKCC	GRCh37	11	8248544	8248544	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	109	593	0	ENST00000335790.3:c.343G>T	p.Ala115Ser	p.A115S	ENST00000335790	NM_002315.2	115	Gcc/Tcc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934038	49934038	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	55	671	0	ENST00000296474.3:c.2374C>G	p.His792Asp	p.H792D	ENST00000296474	NM_002447.2	792	Cat/Gat																																																																															
CDH1	999	MSKCC	GRCh37	16	68857532	68857532	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	C			P-0056502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	190	446	0	ENST00000261769.5:c.2164+3A>C		p.X722_splice	ENST00000261769	NM_004360.3	722																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178928065	178928085	+	inframe_deletion	In_Frame_Del	DEL	TACCTCATGGATTAGAAGATT	TACCTCATGGATTAGAAGATT	-			P-0056502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	175	535	0	ENST00000263967.3:c.1344_1364del	p.Pro449_Leu455del	p.P449_L455del	ENST00000263967	NM_006218.2	448	gTACCTCATGGATTAGAAGATTtg/gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7572986	7572986	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0056623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	297	441	0	ENST00000269305.4:c.1123C>T	p.Gln375Ter	p.Q375*	ENST00000269305	NM_001126112.2	375	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916926	178916937	+	inframe_deletion	In_Frame_Del	DEL	GTAGGCAACCGT	GTAGGCAACCGT	-			P-0056623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	765	346	0	ENST00000263967.3:c.314_325del	p.Val105_Arg108del	p.V105_R108del	ENST00000263967	NM_006218.2	105	GTAGGCAACCGT/-																																																																															
RB1	5925	MSKCC	GRCh37	13	48881495	48881496	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0056623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	166	231	0	ENST00000267163.4:c.218_219insGG	p.Ala74GlufsTer4	p.A74Efs*4	ENST00000267163	NM_000321.2	73	aga/aGGga																																																																															
RB1	5925	MSKCC	GRCh37	13	49054170	49054170	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1475201975		P-0056623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	190	182	0	ENST00000267163.4:c.2750A>G	p.Asn917Ser	p.N917S	ENST00000267163	NM_000321.2	917	aAt/aGt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206729	36206730	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0056623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1671	214	713	0	ENST00000300305.3:c.781_782dup	p.Gln262LeufsTer50	p.Q262Lfs*50	ENST00000300305		261	cct/ccCCt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115972	8115973	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0056667-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			498	199	452	0	ENST00000346208.3:c.1320dup	p.Ala441ArgfsTer66	p.A441Rfs*66	ENST00000346208		440	acc/aCcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433370	49433370	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0056667-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			806	407	896	1	ENST00000301067.7:c.8077C>T	p.Gln2693Ter	p.Q2693*	ENST00000301067	NM_003482.3	2693	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	74	859	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	80	915	1	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934578		P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	85	877	1	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																															
E2F3	1871	MSKCC	GRCh37	6	20488404	20488404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	54	487	1	ENST00000346618.3:c.1060G>A	p.Glu354Lys	p.E354K	ENST00000346618	NM_001949.4	354	Gag/Aag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030293	180030293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	175	1106	0	ENST00000261937.6:c.3991G>T	p.Val1331Leu	p.V1331L	ENST00000261937	NM_182925.4	1331	Gtg/Ttg																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031997	26031997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	40	526	0	ENST00000244661.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000244661	NM_003537.3	98	Gag/Aag																																																																															
NF1	4763	MSKCC	GRCh37	17	29490319	29490319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	56	480	0	ENST00000358273.4:c.404G>T	p.Arg135Leu	p.R135L	ENST00000358273	NM_001042492.2	135	cGg/cTg																																																																															
ARAF	369	MSKCC	GRCh37	X	47428208	47428208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1180	103	1052	0	ENST00000377045.4:c.1168C>A	p.Leu390Ile	p.L390I	ENST00000377045	NM_001654.4	390	Ctc/Atc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563036	21563036	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1169	110	1214	2	ENST00000382592.4:c.883G>T	p.Gly295Ter	p.G295*	ENST00000382592	NM_014572.2	295	Gga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9984850	9984850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	102	548	1	ENST00000330684.3:c.1115G>A	p.Trp372Ter	p.W372*	ENST00000330684	NM_001134407.1	372	tGg/tAg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258568	16258568	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	76	743	0	ENST00000375759.3:c.5833C>G	p.Pro1945Ala	p.P1945A	ENST00000375759	NM_015001.2	1945	Ccc/Gcc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925601	114925601	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749702260		P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	311	907	0	ENST00000543371.1:c.1679C>T	p.Pro560Leu	p.P560L	ENST00000543371	NM_001198531.1	560	cCa/cTa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946975	71946975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1159	104	1032	1	ENST00000298229.2:c.2824G>T	p.Gly942Trp	p.G942W	ENST00000298229	NM_001567.3	942	Ggg/Tgg																																																																															
PGR	5241	MSKCC	GRCh37	11	100922234	100922234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	115	441	0	ENST00000325455.5:c.2278G>T	p.Val760Leu	p.V760L	ENST00000325455	NM_001202474.3	760	Gtg/Ttg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343008	118343008	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	76	297	0	ENST00000534358.1:c.1134G>T	p.Arg378Ser	p.R378S	ENST00000534358	NM_005933.3	378	agG/agT																																																																															
POLE	5426	MSKCC	GRCh37	12	133202319	133202319	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	88	881	0	ENST00000320574.5:c.6569G>C	p.Cys2190Ser	p.C2190S	ENST00000320574	NM_006231.2	2190	tGt/tCt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32945173	32945173	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs878853610		P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	93	353	1	ENST00000380152.3:c.8568G>T	p.Glu2856Asp	p.E2856D	ENST00000380152		2856	gaG/gaT																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100133	30100135	+	missense_variant	Missense_Mutation	ONP	GTA	GTA	AGG			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	122	699	2	ENST00000331968.5:c.1485_1487delinsCCT	p.Thr496Leu	p.T496L	ENST00000331968	NM_002742.2	495	acTACg/acCCTg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986773	36986773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	31	249	0	ENST00000354822.5:c.916G>T	p.Ala306Ser	p.A306S	ENST00000354822	NM_001079668.2	306	Gcg/Tcg																																																																															
MGA	23269	MSKCC	GRCh37	15	41961649	41961650	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	41	462	0	ENST00000219905.7:c.559dup	p.Asp187GlyfsTer46	p.D187Gfs*46	ENST00000219905	NM_001164273.1	186	ctg/ctGg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88726657	88726657	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	79	507	0	ENST00000360948.2:c.387G>T	p.Leu129Phe	p.L129F	ENST00000360948	NM_001012338.2	129	ttG/ttT																																																																															
TSC2	7249	MSKCC	GRCh37	16	2115636	2115636	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	167	963	0	ENST00000219476.3:c.1716G>T	p.Gln572His	p.Q572H	ENST00000219476	NM_000548.3	572	caG/caT																																																																															
NF1	4763	MSKCC	GRCh37	17	29665816	29665816	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	24	285	1	ENST00000358273.4:c.6915del	p.Asn2306IlefsTer13	p.N2306Ifs*13	ENST00000358273	NM_001042492.2	2305	cTt/ct																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39537662	39537662	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	68	381	0	ENST00000262039.4:c.196G>T	p.Glu66Ter	p.E66*	ENST00000262039	NM_002647.2	66	Gaa/Taa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45423102	45423102	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	21	305	0	ENST00000262160.6:c.26C>A	p.Pro9Gln	p.P9Q	ENST00000262160	NM_005901.5	9	cCg/cAg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2191239	2191239	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	66	699	0	ENST00000398665.3:c.493G>T	p.Gly165Cys	p.G165C	ENST00000398665	NM_032482.2	165	Ggt/Tgt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134254	11134254	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	64	776	0	ENST00000344626.4:c.2922del	p.Phe975SerfsTer44	p.F975Sfs*44	ENST00000344626	NM_003072.3	974	Ccc/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212078	36212078	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766234703		P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	80	888	3	ENST00000222270.7:c.1829G>A	p.Arg610His	p.R610H	ENST00000222270	NM_014727.1	610	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218352	36218352	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	176	1010	0	ENST00000222270.7:c.4131G>C	p.Glu1377Asp	p.E1377D	ENST00000222270	NM_014727.1	1377	gaG/gaC																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224061	36224061	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1314	135	1225	0	ENST00000222270.7:c.6611T>C	p.Met2204Thr	p.M2204T	ENST00000222270	NM_014727.1	2204	aTg/aCg																																																																															
AKT2	208	MSKCC	GRCh37	19	40741869	40741869	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	167	985	0	ENST00000392038.2:c.1103G>T	p.Arg368Leu	p.R368L	ENST00000392038	NM_001626.4	368	cGc/cTc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902166	50902166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	189	1029	0	ENST00000440232.2:c.58G>A	p.Gly20Arg	p.G20R	ENST00000440232	NM_002691.3	20	Ggg/Agg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560932	9560932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	74	551	0	ENST00000353224.5:c.850C>A	p.Gln284Lys	p.Q284K	ENST00000353224	NM_177990.2	284	Cag/Aag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739075	40739075	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	163	865	0	ENST00000373198.4:c.3209C>A	p.Pro1070His	p.P1070H	ENST00000373198	NM_133170.3	1070	cCt/cAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162624	47162624	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	85	466	0	ENST00000409792.3:c.3502G>T	p.Val1168Phe	p.V1168F	ENST00000409792	NM_014159.6	1168	Gtt/Ttt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851877	134851877	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	56	661	0	ENST00000398015.3:c.1283C>A	p.Thr428Asn	p.T428N	ENST00000398015	NM_004441.4	428	aCc/aAc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430725	181430725	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	197	1016	1	ENST00000325404.1:c.577C>A	p.Gln193Lys	p.Q193K	ENST00000325404	NM_003106.3	193	Cag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630592	187630592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	128	728	0	ENST00000441802.2:c.390G>T	p.Glu130Asp	p.E130D	ENST00000441802	NM_005245.3	130	gaG/gaT																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518041	176518041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	155	944	0	ENST00000292408.4:c.539C>A	p.Pro180His	p.P180H	ENST00000292408	NM_213647.1	180	cCc/cAc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30676014	30676014	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	129	654	0	ENST00000376406.3:c.2342del	p.Pro781HisfsTer66	p.P781Hfs*66	ENST00000376406	NM_014641.2	781	cCa/ca																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652080	36652080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1337	119	1232	0	ENST00000244741.5:c.202G>A	p.Val68Met	p.V68M	ENST00000244741	NM_000389.4	68	Gtg/Atg																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652485	48652485	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	103	1070	0	ENST00000376670.3:c.1156C>A	p.Leu386Ile	p.L386I	ENST00000376670	NM_002049.3	386	Cta/Ata																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245264	53245264	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	98	963	0	ENST00000375401.3:c.773G>T	p.Arg258Leu	p.R258L	ENST00000375401	NM_004187.3	258	cGg/cTg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115272929	115272930	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	A			P-0056737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	139	721	0	ENST00000438362.2:c.1443_1444delinsT	p.Glu481AspfsTer32	p.E481Dfs*32	ENST00000438362	NM_001242891.1	481	gaAGcc/gaTcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0056854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	64	1042	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46531766	46531766	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	23	389	0	ENST00000262741.5:c.581A>G	p.Glu194Gly	p.E194G	ENST00000262741	NM_003629.3	194	gAg/gGg																																																																															
APC	324	MSKCC	GRCh37	5	112176601	112176601	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	107	227	0	ENST00000257430.4:c.5310G>C	p.Lys1770Asn	p.K1770N	ENST00000257430	NM_000038.5	1770	aaG/aaC																																																																															
POLE	5426	MSKCC	GRCh37	12	133250250	133250250	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs483352909		P-0056931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	137	775	0	ENST00000320574.5:c.1270C>G	p.Leu424Val	p.L424V	ENST00000320574	NM_006231.2	424	Ctc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs879253942		P-0056931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	406	622	0	ENST00000269305.4:c.794T>C	p.Leu265Pro	p.L265P	ENST00000269305	NM_001126112.2	265	cTg/cCg																																																																															
APC	324	MSKCC	GRCh37	5	112174438	112174438	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs863225340		P-0056931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	122	245	0	ENST00000257430.4:c.3147G>A	p.Trp1049Ter	p.W1049*	ENST00000257430	NM_000038.5	1049	tgG/tgA																																																																															
RYBP	23429	MSKCC	GRCh37	3	72428194	72428194	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0056931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	53	410	0	ENST00000477973.2:c.696C>G	p.Ser233Ter	p.S233*	ENST00000477973	NM_012234.5	233	tCa/tGa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162426	47162426	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0056931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	136	403	0	ENST00000409792.3:c.3700G>T	p.Glu1234Ter	p.E1234*	ENST00000409792	NM_014159.6	1234	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	108	211	0	ENST00000257430.4:c.3916G>C	p.Glu1306Gln	p.E1306Q	ENST00000257430	NM_000038.5	1306	Gaa/Caa																																																																															
KDR	3791	MSKCC	GRCh37	4	55955601	55955601	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0056931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	72	418	0	ENST00000263923.4:c.3344T>A	p.Phe1115Tyr	p.F1115Y	ENST00000263923	NM_002253.2	1115	tTt/tAt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67575504	67575505	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0056931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	270	398	0	ENST00000274335.5:c.577_578del	p.Leu193ThrfsTer12	p.L193Tfs*12	ENST00000274335		193	TTa/a																																																																															
APC	324	MSKCC	GRCh37	5	112173548	112173548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	138	276	0	ENST00000257430.4:c.2257C>T	p.His753Tyr	p.H753Y	ENST00000257430	NM_000038.5	753	Cat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112174937	112174937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	101	214	0	ENST00000257430.4:c.3646G>A	p.Glu1216Lys	p.E1216K	ENST00000257430	NM_000038.5	1216	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175109	112175109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	88	172	0	ENST00000257430.4:c.3818G>A	p.Arg1273Lys	p.R1273K	ENST00000257430	NM_000038.5	1273	aGa/aAa																																																																															
APC	324	MSKCC	GRCh37	5	112175984	112175984	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	108	225	0	ENST00000257430.4:c.4693G>C	p.Asp1565His	p.D1565H	ENST00000257430	NM_000038.5	1565	Gat/Cat																																																																															
APC	324	MSKCC	GRCh37	5	112176368	112176368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	156	277	0	ENST00000257430.4:c.5077G>A	p.Glu1693Lys	p.E1693K	ENST00000257430	NM_000038.5	1693	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112176408	112176408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	135	275	0	ENST00000257430.4:c.5117C>T	p.Ser1706Leu	p.S1706L	ENST00000257430	NM_000038.5	1706	tCa/tTa																																																																															
APC	324	MSKCC	GRCh37	5	112177217	112177217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	123	298	0	ENST00000257430.4:c.5926G>A	p.Asp1976Asn	p.D1976N	ENST00000257430	NM_000038.5	1976	Gac/Aac																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52621416	52621423	+	frameshift_variant	Frame_Shift_Ins	INS	CTTTGTTG	CTTTGTTG	TAATAGTAA			P-0056931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	157	479	2	ENST00000394830.3:c.2994_3001delinsTTACTATTA	p.Asn999TyrfsTer6	p.N999Yfs*6	ENST00000394830	NM_018313.4	998	taCAACAAAGtt/taTTACTATTAtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0057027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	160	595	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0057027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	95	172	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
SMYD3	64754	MSKCC	GRCh37	1	245912885	245912885	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374803671		P-0057027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	70	267	0	ENST00000388985.4:c.1267G>A	p.Ala423Thr	p.A423T	ENST00000388985		423	Gcc/Acc																																																																															
RET	5979	MSKCC	GRCh37	10	43607643	43607643	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	189	1121	0	ENST00000355710.3:c.1619G>T	p.Arg540Met	p.R540M	ENST00000355710	NM_020975.4	540	aGg/aTg																																																																															
ATM	472	MSKCC	GRCh37	11	108151716	108151731	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTAAGTCCCATAGTG	TTTAAGTCCCATAGTG	-			P-0057027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	35	174	0	ENST00000278616.4:c.3403-6_3412del		p.X1135_splice	ENST00000278616	NM_000051.3	1135																																																																																
ERCC5	2073	MSKCC	GRCh37	13	103527988	103527988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	84	308	0	ENST00000355739.4:c.3296G>T	p.Gly1099Val	p.G1099V	ENST00000355739	NM_000123.3	1099	gGa/gTa																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273241	18273241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	183	656	0	ENST00000222254.8:c.1034G>A	p.Arg345Gln	p.R345Q	ENST00000222254	NM_005027.3	345	cGg/cAg																																																																															
SRC	6714	MSKCC	GRCh37	20	36022614	36022636	+	frameshift_variant	Frame_Shift_Del	DEL	CGGTTACTGCTCAATGCAGAGAA	CGGTTACTGCTCAATGCAGAGAA	-			P-0057027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	375	712	0	ENST00000358208.4:c.488_510del	p.Arg163ProfsTer11	p.R163Pfs*11	ENST00000358208		163	CGGTTACTGCTCAATGCAGAGAAc/c																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52613216	52613217	+	splice_acceptor_variant	Splice_Site	INS	-	-	TGTTGTAAAGAAAACTGGCTGAAGAAAGGTAGT			P-0057027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	83	473	0	ENST00000394830.3:c.3313-34_3313-2dup		p.X1105_splice	ENST00000394830	NM_018313.4	1105																																																																																
PDGFRA	5156	MSKCC	GRCh37	4	55144103	55144103	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	98	420	0	ENST00000257290.5:c.1932A>C	p.Glu644Asp	p.E644D	ENST00000257290	NM_006206.4	644	gaA/gaC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0057045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	134	376	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
AGO2	27161	MSKCC	GRCh37	8	141549424	141549424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	108	269	0	ENST00000220592.5:c.2164G>A	p.Glu722Lys	p.E722K	ENST00000220592	NM_012154.3	722	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115892	8115893	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0057256-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			602	121	665	0	ENST00000346208.3:c.1240dup	p.His414ProfsTer93	p.H414Pfs*93	ENST00000346208		413	agc/agCc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539759	187539759	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057256-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			507	85	459	2	ENST00000441802.2:c.7981C>A	p.Leu2661Ile	p.L2661I	ENST00000441802	NM_005245.3	2661	Ctc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs1427441061		P-0057262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	246	329	0	ENST00000269305.4:c.560-2A>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
TP63	8626	MSKCC	GRCh37	3	189586404	189586404	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121908841		P-0057262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	74	210	0	ENST00000264731.3:c.1028G>A	p.Arg343Gln	p.R343Q	ENST00000264731	NM_003722.4	343	cGg/cAg																																																																															
RB1	5925	MSKCC	GRCh37	13	48953760	48953760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913302		P-0057275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	148	192	0	ENST00000267163.4:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000267163	NM_000321.2	455	Cga/Tga																																																																															
WT1	7490	MSKCC	GRCh37	11	32450048	32450048	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1444869026		P-0057275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	259	543	0	ENST00000332351.3:c.764C>T	p.Ser255Leu	p.S255L	ENST00000332351	NM_024426.4	255	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0057275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	287	608	1	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
TERT	7015	MSKCC	GRCh37	5	1295241	1295241	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0057275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	87	228	1				ENST00000310581	NM_198253.2																																																																																	
AMER1	139285	MSKCC	GRCh37	X	63410043	63410043	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1486040300		P-0057275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	308	645	0	ENST00000330258.3:c.3124C>A	p.Gln1042Lys	p.Q1042K	ENST00000330258	NM_152424.3	1042	Cag/Aag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18576952	18576952	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	187	385	0	ENST00000266497.5:c.2360A>T	p.Gln787Leu	p.Q787L	ENST00000266497		787	cAg/cTg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30132940	30132940	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	46	515	0	ENST00000331968.5:c.661G>C	p.Glu221Gln	p.E221Q	ENST00000331968	NM_002742.2	221	Gaa/Caa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687249	37687249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	320	600	0	ENST00000447079.4:c.4153G>A	p.Glu1385Lys	p.E1385K	ENST00000447079	NM_015083.1	1385	Gag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096012	11096012	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1247	308	727	0	ENST00000344626.4:c.286A>G	p.Met96Val	p.M96V	ENST00000344626	NM_003072.3	96	Atg/Gtg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291916	15291916	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1983	513	910	0	ENST00000263388.2:c.2850C>G	p.Cys950Trp	p.C950W	ENST00000263388	NM_000435.2	950	tgC/tgG																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223681	36223681	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	403	933	0	ENST00000222270.7:c.6231G>C	p.Gln2077His	p.Q2077H	ENST00000222270	NM_014727.1	2077	caG/caC																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637344	176637344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	219	467	0	ENST00000439151.2:c.1944C>G	p.Asp648Glu	p.D648E	ENST00000439151	NM_022455.4	648	gaC/gaG																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163524	32163524	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	109	608	0	ENST00000375023.3:c.5702C>G	p.Ser1901Trp	p.S1901W	ENST00000375023	NM_004557.3	1901	tCg/tGg																																																																															
ARAF	369	MSKCC	GRCh37	X	47429415	47429415	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	169	498	0	ENST00000377045.4:c.1543C>G	p.Arg515Gly	p.R515G	ENST00000377045	NM_001654.4	515	Cgt/Ggt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0057563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	198	333	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	206	434	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647027	23647028	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0057563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	407	395	0	ENST00000261584.4:c.839dup	p.Asn280LysfsTer3	p.N280Kfs*3	ENST00000261584	NM_024675.3	280	aac/aaAc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740459	58740459	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	94	386	0	ENST00000305921.3:c.1364A>C	p.Glu455Ala	p.E455A	ENST00000305921	NM_003620.3	455	gAg/gCg																																																																															
REL	5966	MSKCC	GRCh37	2	61147183	61147183	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	66	295	0	ENST00000295025.8:c.861del	p.Tyr287Ter	p.Y287*	ENST00000295025	NM_002908.2	287	taC/ta																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157505503	157505503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	232	387	1	ENST00000346085.5:c.3484C>T	p.Pro1162Ser	p.P1162S	ENST00000346085	NM_020732.3	1162	Ccc/Tcc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157505509	157505524	+	frameshift_variant	Frame_Shift_Del	DEL	CCGGAAGTCTTCAGCA	CCGGAAGTCTTCAGCA	-			P-0057563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	202	395	0	ENST00000346085.5:c.3494_3509del	p.Glu1165GlyfsTer41	p.E1165Gfs*41	ENST00000346085	NM_020732.3	1164	CCGGAAGTCTTCAGCAcc/cc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545692	106545692	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	91	334	0	ENST00000359195.3:c.3169G>C	p.Val1057Leu	p.V1057L	ENST00000359195	NM_002649.2	1057	Gtg/Ctg																																																																															
HGF	3082	MSKCC	GRCh37	7	81374316	81374316	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0057591-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			134	27	246	0	ENST00000222390.5:c.746G>T	p.Arg249Ile	p.R249I	ENST00000222390	NM_000601.4	249	aGa/aTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879337	151879337	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057591-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			155	35	507	1	ENST00000262189.6:c.5608C>T	p.Gln1870Ter	p.Q1870*	ENST00000262189	NM_170606.2	1870	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878287	151878287	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057591-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			182	39	465	0	ENST00000262189.6:c.6658C>T	p.Gln2220Ter	p.Q2220*	ENST00000262189	NM_170606.2	2220	Cag/Tag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69009251	69009251	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0057591-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			134	170	232	0	ENST00000288368.4:c.2369-1G>A		p.X790_splice	ENST00000288368	NM_024870.2	790																																																																																
RAF1	5894	MSKCC	GRCh37	3	12647756	12647758	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-			P-0057591-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			77	78	266	0	ENST00000251849.4:c.622_624del	p.Ala208del	p.A208del	ENST00000251849	NM_002880.3	208	GCA/-																																																																															
SPEN	23013	MSKCC	GRCh37	1	16235929	16235929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057591-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			137	62	290	0	ENST00000375759.3:c.995G>T	p.Arg332Leu	p.R332L	ENST00000375759	NM_015001.2	332	cGt/cTt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69009413	69009413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057591-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			130	181	361	0	ENST00000288368.4:c.2530G>A	p.Gly844Ser	p.G844S	ENST00000288368	NM_024870.2	844	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0057601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	346	679	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0057601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	577	322	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	793	398	0	ENST00000263967.3:c.3012G>A	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atA																																																																															
CIC	23152	MSKCC	GRCh37	19	42791024	42791024	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1361309406		P-0057601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	278	851	0	ENST00000575354.2:c.169G>A	p.Glu57Lys	p.E57K	ENST00000575354	NM_015125.3	57	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0057601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	240	642	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011144	12011144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	123	340	0	ENST00000353533.5:c.551C>T	p.Ser184Leu	p.S184L	ENST00000353533	NM_003010.3	184	tCg/tTg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71008412	71008412	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368167189		P-0057601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	149	357	0	ENST00000318789.4:c.2020G>A	p.Glu674Lys	p.E674K	ENST00000318789	NM_032682.5	674	Gag/Aag																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054660	5054660	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1466480406		P-0057601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	135	289	0	ENST00000381652.3:c.712C>T	p.Gln238Ter	p.Q238*	ENST00000381652	NM_004972.3	238	Cag/Tag																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68331767	68331767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	55	438	0	ENST00000487270.1:c.363G>A	p.Met121Ile	p.M121I	ENST00000487270	NM_133509.3	121	atG/atA																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711032	114711032	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0057601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	33	308	0	ENST00000543371.1:c.256G>C	p.Ala86Pro	p.A86P	ENST00000543371	NM_001198531.1	86	Gcg/Ccg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948196	71948196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	498	1073	0	ENST00000298229.2:c.2908G>A	p.Glu970Lys	p.E970K	ENST00000298229	NM_001567.3	970	Gaa/Aaa																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217674	7217674	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	268	554	0	ENST00000380728.2:c.253C>T	p.Gln85Ter	p.Q85*	ENST00000380728		85	Cag/Tag																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19258578	19258578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	475	1243	0	ENST00000162023.5:c.322G>A	p.Glu108Lys	p.E108K	ENST00000162023		108	Gag/Aag																																																																															
ACVR1	90	MSKCC	GRCh37	2	158655960	158655960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	103	368	0	ENST00000263640.3:c.46C>A	p.Leu16Ile	p.L16I	ENST00000263640	NM_001105.4	16	Ctc/Atc																																																																															
EP300	2033	MSKCC	GRCh37	22	41560073	41560073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	152	297	0	ENST00000263253.7:c.3745G>A	p.Glu1249Lys	p.E1249K	ENST00000263253	NM_001429.3	1249	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628542	187628542	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	78	781	0	ENST00000441802.2:c.2440G>C	p.Asp814His	p.D814H	ENST00000441802	NM_005245.3	814	Gat/Cat																																																																															
RAD21	5885	MSKCC	GRCh37	8	117862994	117862994	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	183	381	0	ENST00000297338.2:c.1483G>C	p.Glu495Gln	p.E495Q	ENST00000297338	NM_006265.2	495	Gag/Cag																																																																															
TEK	7010	MSKCC	GRCh37	9	27192495	27192495	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	198	461	0	ENST00000380036.4:c.1498G>C	p.Glu500Gln	p.E500Q	ENST00000380036	NM_000459.3	500	Gag/Cag																																																																															
ATRX	546	MSKCC	GRCh37	X	76849182	76849182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	124	341	0	ENST00000373344.5:c.6094G>A	p.Glu2032Lys	p.E2032K	ENST00000373344	NM_000489.3	2032	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1131691025		P-0057653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	432	595	2	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112174091	112174094	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0057653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	47	336	0	ENST00000257430.4:c.2802_2805del	p.Tyr935IlefsTer19	p.Y935Ifs*19	ENST00000257430	NM_000038.5	934	ACTTac/ac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264066389		P-0057653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	112	673	2	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
MST1	4485	MSKCC	GRCh37	3	49721812	49721812	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs142690032		P-0057653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			13	11	28	2	ENST00000449682.2:c.1951C>T	p.Arg651Ter	p.R651*	ENST00000449682	NM_020998.3	651	Cga/Tga																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460552	149460552	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148727692		P-0057653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	129	815	0	ENST00000286301.3:c.85G>A	p.Glu29Lys	p.E29K	ENST00000286301	NM_005211.3	29	Gag/Aag																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988334	36988334	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058066-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			356	21	593	0	ENST00000354822.5:c.319C>T	p.Gln107Ter	p.Q107*	ENST00000354822	NM_001079668.2	107	Cag/Tag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246301	46246323	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTGTAGTTGTCTCACCACATT	AAGTGTAGTTGTCTCACCACATT	-			P-0058066-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			472	43	576	0	ENST00000334344.6:c.4395_4417del	p.Ser1466TyrfsTer29	p.S1466Yfs*29	ENST00000334344	NM_152641.2	1465	ccAAGTGTAGTTGTCTCACCACATTct/ccct																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482537	56482537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			608	169	526	0	ENST00000267101.3:c.994G>A	p.Glu332Lys	p.E332K	ENST00000267101	NM_001982.3	332	Gag/Aag																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402491	20402491	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1304084051		P-0058086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			806	196	628	0	ENST00000346618.3:c.28G>A	p.Glu10Lys	p.E10K	ENST00000346618	NM_001949.4	10	Gag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151851177	151851177	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141966811		P-0058086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			252	49	239	2	ENST00000262189.6:c.12194C>T	p.Ala4065Val	p.A4065V	ENST00000262189	NM_170606.2	4065	gCg/gTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2983981	2983981	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866164446		P-0058086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			974	214	832	0	ENST00000396946.4:c.549G>A	p.Met183Ile	p.M183I	ENST00000396946	NM_032415.4	183	atG/atA																																																																															
FLCN	201163	MSKCC	GRCh37	17	17127318	17127318	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369906553		P-0058086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			817	248	735	0	ENST00000285071.4:c.536G>A	p.Arg179Gln	p.R179Q	ENST00000285071	NM_144997.5	179	cGg/cAg																																																																															
KIT	3815	MSKCC	GRCh37	4	55595542	55595542	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	28	320	0	ENST00000288135.5:c.2032C>G	p.Leu678Val	p.L678V	ENST00000288135	NM_000222.2	678	Ctt/Gtt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057904	27057904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058090-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			692	310	772	0	ENST00000324856.7:c.1612C>T	p.Gln538Ter	p.Q538*	ENST00000324856	NM_006015.4	538	Cag/Tag																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400827	72400827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058090-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			542	106	424	0	ENST00000357731.5:c.344C>T	p.Pro115Leu	p.P115L	ENST00000357731	NM_173808.2	115	cCa/cTa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112401	115112401	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs888338239		P-0058090-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			754	104	720	0	ENST00000257566.3:c.1339C>T	p.Arg447Cys	p.R447C	ENST00000257566	NM_016569.3	447	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876659802		P-0058090-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			178	590	564	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306661	41306661	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755794681		P-0058090-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			821	185	528	0	ENST00000373198.4:c.998C>T	p.Thr333Met	p.T333M	ENST00000373198	NM_133170.3	333	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0058090-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			4862	653	527	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151846107	151846107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058090-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			565	283	653	0	ENST00000262189.6:c.12905C>T	p.Pro4302Leu	p.P4302L	ENST00000262189	NM_170606.2	4302	cCt/cTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044898	47044898	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058090-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			96	750	390	0	ENST00000329236.7:c.1990C>T	p.Gln664Ter	p.Q664*	ENST00000329236	NM_001204466.1	664	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0058302-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			281	303	556	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68981360	68981360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1474820456		P-0058302-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			132	75	279	0	ENST00000288368.4:c.1432G>A	p.Val478Met	p.V478M	ENST00000288368	NM_024870.2	478	Gtg/Atg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45795022	45795022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746159001		P-0058302-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			613	335	635	0	ENST00000372115.3:c.1564C>T	p.His522Tyr	p.H522Y	ENST00000372115	NM_001048171.1	522	Cac/Tac																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728578	190728578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	33	296	0	ENST00000441310.2:c.1966C>A	p.Pro656Thr	p.P656T	ENST00000441310	NM_000534.4	656	Ccc/Acc																																																																															
B2M	567	MSKCC	GRCh37	15	45003747	45003747	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0058415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	72	444	0	ENST00000558401.1:c.3G>T	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	421	672	0	ENST00000269305.4:c.298del	p.Gln100ArgfsTer23	p.Q100Rfs*23	ENST00000269305	NM_001126112.2	100	Cag/ag																																																																															
ERF	2077	MSKCC	GRCh37	19	42754067	42754067	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			766	295	494	0	ENST00000222329.4:c.285C>G	p.His95Gln	p.H95Q	ENST00000222329	NM_006494.2	95	caC/caG																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953038	2953038	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747530675		P-0058481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	431	594	2	ENST00000396946.4:c.2902G>A	p.Ala968Thr	p.A968T	ENST00000396946	NM_032415.4	968	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0058481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	268	508	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	182	501	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268138	153268138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1406877044		P-0058481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	360	487	0	ENST00000281708.4:c.670C>T	p.Arg224Ter	p.R224*	ENST00000281708	NM_033632.3	224	Cga/Tga																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78831645	78831645	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs572833876		P-0058481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			729	182	556	0	ENST00000306801.3:c.1454G>A	p.Arg485Gln	p.R485Q	ENST00000306801	NM_020761.2	485	cGa/cAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420598	49420598	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1013	96	694	0	ENST00000301067.7:c.15151A>G	p.Asn5051Asp	p.N5051D	ENST00000301067	NM_003482.3	5051	Aac/Gac																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514784	103514784	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			790	112	633	0	ENST00000355739.4:c.1285G>T	p.Asp429Tyr	p.D429Y	ENST00000355739	NM_000123.3	429	Gat/Tat																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533631	63533631	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0058481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			987	55	699	0	ENST00000307078.5:c.1523A>C	p.Lys508Thr	p.K508T	ENST00000307078	NM_004655.3	508	aAg/aCg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396230	139396230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1313068805		P-0058481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			912	93	650	0	ENST00000277541.6:c.5608G>A	p.Asp1870Asn	p.D1870N	ENST00000277541	NM_017617.3	1870	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579426	7579426	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0058768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			862	57	598	0	ENST00000269305.4:c.261del	p.Ala88ProfsTer35	p.A88Pfs*35	ENST00000269305	NM_001126112.2	87	ccA/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0058859-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	101	598	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828108	243828108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058859-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	39	271	0	ENST00000263826.5:c.250G>A	p.Glu84Lys	p.E84K	ENST00000263826	NM_005465.4	84	Gag/Aag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599904	10599904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058859-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	85	620	0	ENST00000171111.5:c.1672G>C	p.Gly558Arg	p.G558R	ENST00000171111	NM_203500.1	558	Ggg/Cgg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220651	1220651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058859-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	90	736	0	ENST00000326873.7:c.669G>T	p.Glu223Asp	p.E223D	ENST00000326873	NM_000455.4	223	gaG/gaT																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260177	19260177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058859-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	138	661	1	ENST00000162023.5:c.116G>T	p.Cys39Phe	p.C39F	ENST00000162023		39	tGt/tTt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950583	38950583	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0058859-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	65	479	0	ENST00000357387.3:c.3367G>T	p.Glu1123Ter	p.E1123*	ENST00000357387	NM_152756.3	1123	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913273		P-0058883-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			143	39	184	0	ENST00000263967.3:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000263967	NM_006218.2	542	Gaa/Caa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99442820	99442820	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148662051		P-0058883-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	117	517	0	ENST00000268035.6:c.1217G>A	p.Arg406His	p.R406H	ENST00000268035	NM_000875.3	406	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48586250	48586250	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058883-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			213	72	294	0	ENST00000342988.3:c.919G>T	p.Glu307Ter	p.E307*	ENST00000342988	NM_005359.5	307	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0058883-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			262	64	310	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249356	110249356	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201645553		P-0058883-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			565	141	595	0	ENST00000374672.4:c.1217C>T	p.Thr406Ile	p.T406I	ENST00000374672	NM_004235.4	406	aCc/aTc																																																																															
B2M	567	MSKCC	GRCh37	15	45007731	45007731	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058883-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			469	101	439	0	ENST00000558401.1:c.178del	p.Leu60Ter	p.L60*	ENST00000558401	NM_004048.2	60	Ctg/tg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455144	50455144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058925-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			432	39	510	0	ENST00000331340.3:c.691G>A	p.Gly231Ser	p.G231S	ENST00000331340	NM_006060.4	231	Ggc/Agc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682400	52682400	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0058925-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			298	21	392	1	ENST00000394830.3:c.773del	p.Asn258MetfsTer25	p.N258Mfs*25	ENST00000394830	NM_018313.4	258	aAt/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520008		P-0058925-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			710	88	707	0	ENST00000269305.4:c.613T>G	p.Tyr205Asp	p.Y205D	ENST00000269305	NM_001126112.2	205	Tat/Gat																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55146538	55146538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058925-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			494	28	498	0	ENST00000257290.5:c.2212G>A	p.Asp738Asn	p.D738N	ENST00000257290	NM_006206.4	738	Gat/Aat																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024426	31024426	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0058925-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			618	35	649	0	ENST00000375687.4:c.3915del	p.Phe1305LeufsTer145	p.F1305Lfs*145	ENST00000375687	NM_015338.5	1304	cTt/ct																																																																															
NF2	4771	MSKCC	GRCh37	22	30050680	30050680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058925-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			570	59	521	0	ENST00000338641.4:c.482G>T	p.Gly161Val	p.G161V	ENST00000338641	NM_000268.3	161	gGa/gTa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672384	86672384	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0058925-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			286	24	336	0	ENST00000274376.6:c.2184+2T>C		p.X728_splice	ENST00000274376	NM_002890.2	728																																																																																
MSH6	2956	MSKCC	GRCh37	2	48026753	48026753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058925-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			618	46	627	0	ENST00000234420.5:c.1635del	p.Glu546ArgfsTer25	p.E546Rfs*25	ENST00000234420	NM_000179.2	544	gAa/ga																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798962	45798962	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058925-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			753	85	798	0	ENST00000372115.3:c.341A>T	p.Tyr114Phe	p.Y114F	ENST00000372115	NM_001048171.1	114	tAt/tTt																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230486754	230486754	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058925-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			526	43	610	1	ENST00000525115.1:c.637A>G	p.Lys213Glu	p.K213E	ENST00000525115		213	Aaa/Gaa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136195	64136195	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1170953272		P-0058925-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			573	49	748	0	ENST00000334205.4:c.1354C>T	p.Arg452Cys	p.R452C	ENST00000334205	NM_003942.2	452	Cgc/Tgc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605185	46605185	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058925-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			586	32	612	0	ENST00000263734.3:c.1402A>G	p.Thr468Ala	p.T468A	ENST00000263734	NM_001430.4	468	Acc/Gcc																																																																															
SDHA	6389	MSKCC	GRCh37	5	251137	251137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058925-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			259	23	262	0	ENST00000264932.6:c.1582G>T	p.Val528Leu	p.V528L	ENST00000264932	NM_004168.2	528	Gtg/Ttg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248087	110248087	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058925-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			522	36	523	0	ENST00000374672.4:c.1385A>T	p.Asp462Val	p.D462V	ENST00000374672	NM_004235.4	462	gAc/gTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410312	63410312	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058925-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			673	42	784	0	ENST00000330258.3:c.2855C>G	p.Pro952Arg	p.P952R	ENST00000330258	NM_152424.3	952	cCc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0058933-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			40	259	384	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0058933-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			290	215	319	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243484	46243484	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058933-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			408	317	392	0	ENST00000334344.6:c.1837C>T	p.Gln613Ter	p.Q613*	ENST00000334344	NM_152641.2	613	Cag/Tag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222265	2222265	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369350082		P-0058933-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			53	270	451	2	ENST00000398665.3:c.3097G>A	p.Gly1033Ser	p.G1033S	ENST00000398665	NM_032482.2	1033	Ggc/Agc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244184	46244184	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058933-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			339	318	469	0	ENST00000334344.6:c.2278C>G	p.Gln760Glu	p.Q760E	ENST00000334344	NM_152641.2	760	Cag/Gag																																																																															
TP63	8626	MSKCC	GRCh37	3	189582127	189582127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058933-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			529	312	432	0	ENST00000264731.3:c.686C>G	p.Pro229Arg	p.P229R	ENST00000264731	NM_003722.4	229	cCt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112174175	112174175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058933-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			818	166	398	0	ENST00000257430.4:c.2884G>A	p.Asp962Asn	p.D962N	ENST00000257430	NM_000038.5	962	Gat/Aat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971121	21971121	+	inframe_insertion	In_Frame_Ins	INS	G	G	AGTGAGA			P-0058933-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			93	86	486	0	ENST00000304494.5:c.237delinsTCTCACT	p.Leu78_Thr79dup	p.L78_T79dup	ENST00000304494	NM_000077.4	78	acC/acTCTCACT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0059129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	161	662	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864769	68864769	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0059129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	55	390	0	ENST00000288368.4:c.140C>T	p.Ser47Leu	p.S47L	ENST00000288368	NM_024870.2	47	tCg/tTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70404761	70404761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	60	426	0	ENST00000373644.4:c.2275G>A	p.Gly759Ser	p.G759S	ENST00000373644	NM_030625.2	759	Ggc/Agc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913386	32913386	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	46	425	0	ENST00000380152.3:c.4894A>G	p.Ser1632Gly	p.S1632G	ENST00000380152		1632	Agt/Ggt																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288153	21288153	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	80	486	0	ENST00000354336.3:c.398A>G	p.Asp133Gly	p.D133G	ENST00000354336	NM_005207.3	133	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579485	7579485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs869312782		P-0059154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	256	598	0	ENST00000269305.4:c.202G>T	p.Glu68Ter	p.E68*	ENST00000269305	NM_001126112.2	68	Gag/Tag																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115279379	115279379	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0059154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	56	233	0	ENST00000438362.2:c.638A>G	p.His213Arg	p.H213R	ENST00000438362	NM_001242891.1	213	cAt/cGt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731065	162731065	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	170	479	0	ENST00000367921.3:c.920G>T	p.Arg307Leu	p.R307L	ENST00000367921	NM_006182.2	307	cGc/cTc																																																																															
RB1	5925	MSKCC	GRCh37	13	48919332	48919332	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0059154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	23	174	0	ENST00000267163.4:c.499del	p.Arg167GlyfsTer8	p.R167Gfs*8	ENST00000267163	NM_000321.2	166	gAa/ga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347933	89347933	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1482549571		P-0059154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			705	131	547	0	ENST00000301030.4:c.5017G>C	p.Gly1673Arg	p.G1673R	ENST00000301030	NM_001256183.1	1673	Ggt/Cgt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998937	11998937	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	66	304	0	ENST00000353533.5:c.439A>G	p.Met147Val	p.M147V	ENST00000353533	NM_003010.3	147	Atg/Gtg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220475	1220475	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	139	651	0	ENST00000326873.7:c.568C>G	p.Leu190Val	p.L190V	ENST00000326873	NM_000455.4	190	Ctc/Gtc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220485	1220485	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	135	657	0	ENST00000326873.7:c.578C>A	p.Ser193Tyr	p.S193Y	ENST00000326873	NM_000455.4	193	tCc/tAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141511	11141511	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0059154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	129	486	0	ENST00000344626.4:c.3488T>G	p.Leu1163Arg	p.L1163R	ENST00000344626	NM_003072.3	1163	cTg/cGg																																																																															
RAC1	5879	MSKCC	GRCh37	7	6438327	6438327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	73	283	0	ENST00000356142.4:c.260G>T	p.Arg87Leu	p.R87L	ENST00000356142	NM_018890.3	87	cGg/cTg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148511172	148511172	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			731	112	421	0	ENST00000320356.2:c.1730C>G	p.Pro577Arg	p.P577R	ENST00000320356	NM_004456.4	577	cCg/cGg																																																																															
MED12	9968	MSKCC	GRCh37	X	70345232	70345232	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761529397		P-0059154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	113	471	0	ENST00000374080.3:c.2258G>A	p.Arg753Gln	p.R753Q	ENST00000374080		753	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101037	27101037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	62	486	0	ENST00000324856.7:c.4319C>T	p.Thr1440Ile	p.T1440I	ENST00000324856	NM_006015.4	1440	aCa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578400	7578400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	114	645	1	ENST00000269305.4:c.530C>A	p.Pro177His	p.P177H	ENST00000269305	NM_001126112.2	177	cCc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121912580		P-0059172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	150	381	0	ENST00000342988.3:c.1157G>T	p.Gly386Val	p.G386V	ENST00000342988	NM_005359.5	386	gGt/gTt																																																																															
UPF1	5976	MSKCC	GRCh37	19	18943047	18943047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	126	583	0	ENST00000262803.5:c.29C>T	p.Ser10Leu	p.S10L	ENST00000262803	NM_002911.3	10	tCg/tTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721166	176721166	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	47	535	0	ENST00000439151.2:c.6797A>G	p.Lys2266Arg	p.K2266R	ENST00000439151	NM_022455.4	2266	aAa/aGa																																																																															
MED12	9968	MSKCC	GRCh37	X	70342174	70342174	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	44	511	0	ENST00000374080.3:c.1226G>T	p.Gly409Val	p.G409V	ENST00000374080		409	gGt/gTt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15971266	15971278	+	frameshift_variant	Frame_Shift_Del	DEL	CCGATAAACCTCG	CCGATAAACCTCG	-			P-0059442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	88	526	0	ENST00000268712.3:c.4671_4683del	p.Glu1558AlafsTer53	p.E1558Afs*53	ENST00000268712	NM_006311.3	1557	ggCGAGGTTTATCGG/gg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0059449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	84	513	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0059449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	208	709	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0059449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	51	100	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0059449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	78	506	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
PALB2	79728	MSKCC	GRCh37	16	23635370	23635370	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45624036		P-0059449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	47	212	0	ENST00000261584.4:c.2794G>A	p.Val932Met	p.V932M	ENST00000261584	NM_024675.3	932	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112116538	112116538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs749479682		P-0059449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	78	239	0	ENST00000257430.4:c.583C>T	p.Gln195Ter	p.Q195*	ENST00000257430	NM_000038.5	195	Caa/Taa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65309749	65309749	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0059449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	95	532	0	ENST00000342505.4:c.2401G>A	p.Glu801Lys	p.E801K	ENST00000342505	NM_002227.2	801	Gag/Aag																																																																															
GNA11	2767	MSKCC	GRCh37	19	3115036	3115036	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1317391449		P-0059468-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1057	101	589	0	ENST00000078429.4:c.571G>A	p.Glu191Lys	p.E191K	ENST00000078429	NM_002067.2	191	Gag/Aag																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123239397	123239397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059468-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			636	48	437	0	ENST00000358487.5:c.2440C>T	p.His814Tyr	p.H814Y	ENST00000358487	NM_000141.4	814	Cac/Tac																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21346018	21346018	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0059468-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			879	181	563	0	ENST00000215739.8:c.893T>G	p.Val298Gly	p.V298G	ENST00000215739	NM_006767.3	298	gTg/gGg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0059478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	91	391	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0059478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	108	532	0	ENST00000269305.4:c.686_687del	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																																																															
JAK1	3716	MSKCC	GRCh37	1	65301888	65301888	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	66	391	0	ENST00000342505.4:c.3151G>C	p.Glu1051Gln	p.E1051Q	ENST00000342505	NM_002227.2	1051	Gaa/Caa																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429361	78429361	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1158364154		P-0059478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	172	475	0	ENST00000370768.2:c.1081A>G	p.Arg361Gly	p.R361G	ENST00000370768	NM_003902.3	361	Aga/Gga																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741370	17741370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	142	576	0	ENST00000250003.3:c.41C>T	p.Thr14Met	p.T14M	ENST00000250003	NM_002478.4	14	aCg/aTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118361941	118361946	+	inframe_deletion	In_Frame_Del	DEL	ATGATG	ATGATG	-			P-0059478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	137	436	0	ENST00000534358.1:c.4734_4739del	p.Asp1579_Asp1580del	p.D1579_D1580del	ENST00000534358	NM_005933.3	1576	tATGATGat/tat																																																																															
KDM5A	5927	MSKCC	GRCh37	12	430214	430214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	98	480	0	ENST00000399788.2:c.2488G>T	p.Val830Phe	p.V830F	ENST00000399788	NM_001042603.1	830	Gtc/Ttc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856239	111856239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	33	598	0	ENST00000341259.2:c.290C>A	p.Pro97Gln	p.P97Q	ENST00000341259	NM_005475.2	97	cCa/cAa																																																																															
RAB35	11021	MSKCC	GRCh37	12	120536676	120536676	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	218	696	0	ENST00000229340.5:c.416C>A	p.Ala139Asp	p.A139D	ENST00000229340	NM_006861.6	139	gCc/gAc																																																																															
CBFB	865	MSKCC	GRCh37	16	67132612	67132612	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0059478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	72	409	0	ENST00000412916.2:c.496-1G>C		p.X166_splice	ENST00000412916		166																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31025059	31025059	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			792	158	575	0	ENST00000375687.4:c.4544T>A	p.Met1515Lys	p.M1515K	ENST00000375687	NM_015338.5	1515	aTg/aAg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505326	186505326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	90	428	0	ENST00000323963.5:c.952G>A	p.Glu318Lys	p.E318K	ENST00000323963		318	Gaa/Aaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230840	66230840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	103	421	0	ENST00000273854.3:c.2131G>A	p.Val711Ile	p.V711I	ENST00000273854	NM_004439.5	711	Gta/Ata																																																																															
ROS1	6098	MSKCC	GRCh37	6	117746720	117746720	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	86	377	0	ENST00000368508.3:c.100C>A	p.Leu34Ile	p.L34I	ENST00000368508	NM_002944.2	34	Cta/Ata																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0059570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	304	511	20	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0059570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	215	581	12	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89456425	89456425	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	46	285	3	ENST00000336596.2:c.1601C>G	p.Ser534Cys	p.S534C	ENST00000336596	NM_005233.5	534	tCc/tGc																																																																															
ATRX	546	MSKCC	GRCh37	X	76891448	76891448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	37	247	3	ENST00000373344.5:c.4657C>T	p.His1553Tyr	p.H1553Y	ENST00000373344	NM_000489.3	1553	Cat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0059585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	83	608	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0059585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	97	567	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0059585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	68	483	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	106	676	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267359	198267359	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs377023736		P-0059585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	77	586	0	ENST00000335508.6:c.1998G>T	p.Lys666Asn	p.K666N	ENST00000335508	NM_012433.2	666	aaG/aaT																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181857	56181857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	53	440	0	ENST00000399503.3:c.4081C>T	p.His1361Tyr	p.H1361Y	ENST00000399503	NM_005921.1	1361	Cat/Tat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168785	56168785	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	74	550	1	ENST00000399503.3:c.1639C>T	p.Gln547Ter	p.Q547*	ENST00000399503	NM_005921.1	547	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830365	72830371	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGATG	GGTGATG	-			P-0059585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	117	764	0	ENST00000268489.5:c.6210_6216del	p.Ile2071HisfsTer28	p.I2071Hfs*28	ENST00000268489	NM_006885.3	2070	ccCATCACC/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0059710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	165	462	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39609305	39609305	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	138	320	0	ENST00000262039.4:c.1607G>C	p.Arg536Thr	p.R536T	ENST00000262039	NM_002647.2	536	aGa/aCa																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115268925	115268925	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	206	355	0	ENST00000438362.2:c.1685C>G	p.Ser562Cys	p.S562C	ENST00000438362	NM_001242891.1	562	tCc/tGc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246274	46246274	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	113	410	0	ENST00000334344.6:c.4368G>C	p.Leu1456Phe	p.L1456F	ENST00000334344	NM_152641.2	1456	ttG/ttC																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864799	57864799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	229	574	0	ENST00000228682.2:c.2276C>A	p.Thr759Asn	p.T759N	ENST00000228682	NM_005269.2	759	aCc/aAc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39618766	39618766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	49	237	0	ENST00000262039.4:c.1990G>A	p.Asp664Asn	p.D664N	ENST00000262039	NM_002647.2	664	Gac/Aac																																																																															
KDR	3791	MSKCC	GRCh37	4	55991415	55991415	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	201	488	0	ENST00000263923.4:c.46G>T	p.Glu16Ter	p.E16*	ENST00000263923	NM_002253.2	16	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	224	434	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532653	63532654	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1301294410		P-0059904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	169	482	0	ENST00000307078.5:c.1925dup	p.Ala643GlyfsTer64	p.A643Gfs*64	ENST00000307078	NM_004655.3	642	aag/aaAg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17951085	17951085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	194	340	0	ENST00000458235.1:c.1208G>A	p.Arg403His	p.R403H	ENST00000458235	NM_000215.3	403	cGc/cAc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793386	242793386	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs756100729		P-0059904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	210	515	0	ENST00000334409.5:c.691C>T	p.Arg231Ter	p.R231*	ENST00000334409	NM_005018.2	231	Cga/Tga																																																																															
PGR	5241	MSKCC	GRCh37	11	100998516	100998516	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749208871		P-0059904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	182	545	0	ENST00000325455.5:c.1286C>T	p.Ala429Val	p.A429V	ENST00000325455	NM_001202474.3	429	gCg/gTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs80338963		P-0059904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	180	422	0	ENST00000342988.3:c.1081C>G	p.Arg361Gly	p.R361G	ENST00000342988	NM_005359.5	361	Cgc/Ggc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256529	16256529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749587229		P-0059904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	37	532	0	ENST00000375759.3:c.3794G>A	p.Arg1265Gln	p.R1265Q	ENST00000375759	NM_015001.2	1265	cGa/cAa																																																																															
EED	8726	MSKCC	GRCh37	11	85961344	85961344	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138343311		P-0059904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	27	277	0	ENST00000263360.6:c.121G>A	p.Ala41Thr	p.A41T	ENST00000263360	NM_003797.3	41	Gct/Act																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212652803	212652803	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200302763		P-0059904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	79	342	0	ENST00000342788.4:c.503G>A	p.Arg168Gln	p.R168Q	ENST00000342788	NM_005235.2	168	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	82	232	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CASP8	841	MSKCC	GRCh37	2	202141580	202141580	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0059904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	46	376	0	ENST00000358485.4:c.868A>T	p.Lys290Ter	p.K290*	ENST00000358485	NM_001080125.1	290	Aaa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023559	27023560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0059932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	109	747	0	ENST00000324856.7:c.671dup	p.Pro225AlafsTer175	p.P225Afs*175	ENST00000324856	NM_006015.4	222	tac/taCc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845910	156845910	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0059932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			815	51	960	0	ENST00000524377.1:c.1540T>G	p.Trp514Gly	p.W514G	ENST00000524377	NM_002529.3	514	Tgg/Ggg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243778435	243778435	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1360057195		P-0059932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	93	432	0	ENST00000263826.5:c.590G>A	p.Ser197Asn	p.S197N	ENST00000263826	NM_005465.4	197	aGc/aAc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43767884	43767884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	182	611	0	ENST00000382044.4:c.964G>A	p.Asp322Asn	p.D322N	ENST00000382044	NM_001141980.1	322	Gat/Aat																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350611	15350611	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	131	645	0	ENST00000263377.2:c.3304G>C	p.Val1102Leu	p.V1102L	ENST00000263377	NM_058243.2	1102	Gtc/Ctc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260149	19260149	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	181	715	0	ENST00000162023.5:c.144del	p.Phe48LeufsTer20	p.F48Lfs*20	ENST00000162023		48	ttC/tt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106547248	106547248	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	153	632	0	ENST00000369096.4:c.485T>A	p.Val162Glu	p.V162E	ENST00000369096	NM_001198.3	162	gTg/gAg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6029523	6029523	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0059932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	119	503	0	ENST00000265849.7:c.1052T>G	p.Leu351Trp	p.L351W	ENST00000265849	NM_000535.5	351	tTg/tGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55211106	55211106	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0059932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	99	592	0	ENST00000275493.2:c.349T>G	p.Tyr117Asp	p.Y117D	ENST00000275493	NM_005228.3	117	Tat/Gat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900150	151900150	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0059932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	100	396	0	ENST00000262189.6:c.3962-1G>T		p.X1321_splice	ENST00000262189	NM_170606.2	1321																																																																																
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0060174-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			314	47	501	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257633	19257633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060174-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			375	62	688	0	ENST00000162023.5:c.593C>T	p.Pro198Leu	p.P198L	ENST00000162023		198	cCc/cTc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3831203	3831203	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0060174-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			299	57	406	0	ENST00000262367.5:c.1676+2T>G		p.X559_splice	ENST00000262367	NM_004380.2	559																																																																																
ALK	238	MSKCC	GRCh37	2	29541171	29541171	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0060174-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			330	18	538	0	ENST00000389048.3:c.1646A>G	p.Glu549Gly	p.E549G	ENST00000389048	NM_004304.4	549	gAg/gGg																																																																															
EP300	2033	MSKCC	GRCh37	22	41566511	41566511	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0060174-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	68	452	0	ENST00000263253.7:c.4388T>A	p.Leu1463Gln	p.L1463Q	ENST00000263253	NM_001429.3	1463	cTg/cAg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945644	38945644	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060174-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			361	29	510	0	ENST00000357387.3:c.4582A>C	p.Ile1528Leu	p.I1528L	ENST00000357387	NM_152756.3	1528	Att/Ctt																																																																															
SESN1	27244	MSKCC	GRCh37	6	109415024	109415024	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060174-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	22	456	0	ENST00000436639.2:c.253A>C	p.Ser85Arg	p.S85R	ENST00000436639	NM_014454.2	85	Agt/Cgt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001203	150001203	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060174-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			345	24	522	0	ENST00000253339.5:c.2401C>A	p.Pro801Thr	p.P801T	ENST00000253339		801	Cca/Aca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878772	151878772	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060174-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			446	48	599	0	ENST00000262189.6:c.6173G>C	p.Gly2058Ala	p.G2058A	ENST00000262189	NM_170606.2	2058	gGa/gCa																																																																															
STK11	6794	MSKCC	GRCh37	19	1222001	1222001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060320-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	31	499	0	ENST00000326873.7:c.916C>T	p.His306Tyr	p.H306Y	ENST00000326873	NM_000455.4	306	Cac/Tac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600336	10600336	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs751088754		P-0060320-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			434	61	623	0	ENST00000171111.5:c.1519C>T	p.Arg507Ter	p.R507*	ENST00000171111	NM_203500.1	507	Cga/Tga																																																																															
BLM	641	MSKCC	GRCh37	15	91310181	91310181	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0060320-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			262	39	378	0	ENST00000355112.3:c.2235A>C	p.Glu745Asp	p.E745D	ENST00000355112	NM_000057.2	745	gaA/gaC																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023679	27023679	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771542513		P-0060320-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			448	25	643	0	ENST00000324856.7:c.785C>T	p.Ser262Leu	p.S262L	ENST00000324856	NM_006015.4	262	tCg/tTg																																																																															
EED	8726	MSKCC	GRCh37	11	85956296	85956296	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs374657922		P-0060320-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			299	44	455	0	ENST00000263360.6:c.25G>T	p.Ala9Ser	p.A9S	ENST00000263360	NM_003797.3	9	Gcg/Tcg																																																																															
CBL	867	MSKCC	GRCh37	11	119149102	119149275	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTGGGGTTAGGTTTAAACTTTTACTTTTTTTTGATCTCTAGGAAATGTATTTTCTAGTAGATTAATATTTTAAGTATTTTCAGATGCATCTGTTACTATCTTTTGCTTCTTCTGCAGGAATCAGAAGGTCAGGGCTGTCCTTTCTGCCGATGTGAAATTAAAGGTACTGAACC	TTTGGGGTTAGGTTTAAACTTTTACTTTTTTTTGATCTCTAGGAAATGTATTTTCTAGTAGATTAATATTTTAAGTATTTTCAGATGCATCTGTTACTATCTTTTGCTTCTTCTGCAGGAATCAGAAGGTCAGGGCTGTCCTTTCTGCCGATGTGAAATTAAAGGTACTGAACC	-			P-0060320-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			334	49	320	0	ENST00000264033.4:c.1227+95_1283del		p.X409_splice	ENST00000264033	NM_005188.3	409																																																																																
ALK	238	MSKCC	GRCh37	2	29455296	29455296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060320-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			410	45	569	0	ENST00000389048.3:c.2506G>A	p.Val836Met	p.V836M	ENST00000389048	NM_004304.4	836	Gtg/Atg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527946	157527946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060320-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			476	51	628	0	ENST00000346085.5:c.5671G>T	p.Asp1891Tyr	p.D1891Y	ENST00000346085	NM_020732.3	1891	Gac/Tac																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			789	502	185	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																																																															
YAP1	10413	MSKCC	GRCh37	11	102080257	102080762	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATATCAATCCCAGCACAGCAAATTCTCCAAAATGTCAGGTAGGCTCTTATCTGATGTTTTAGCACTGGAAAAAAAAAAAAAAAGATATTAAATTAGGAAAGAGAAACTTACATTCCAGGGTCCTGTCCTTATTGGACATTAGCCCAGAGAATAACTTTGAGCCATCTTTCTACCAAGATACTCAGGTTAACATTGCCCTTCCAAGAAAGTCTACACAGTCTGCTCCCTCCCTGCTCCTCCTAGGGAGTTTCTGTTTATTTTGATTCCATGGAGGTCTTTTTTATTCTATATTTAAATGTATTGTGTCTCAGTTGTACATCCTATCAGCTAGGTATGCCTAATTTTTATTTGAATAGCTTAAAATAGTATGTGTAATGATTTAAAGGAATTAATAAATTGAACAGTAACAAAAGCAGTATTTACTTGGATAGGCTACTTTAGGAAATTTTAGAGTCATGATACTATGAGGAAGAGAAAAATTCTTTCTAGTGGACATTCCAAAGGA	AATATCAATCCCAGCACAGCAAATTCTCCAAAATGTCAGGTAGGCTCTTATCTGATGTTTTAGCACTGGAAAAAAAAAAAAAAAGATATTAAATTAGGAAAGAGAAACTTACATTCCAGGGTCCTGTCCTTATTGGACATTAGCCCAGAGAATAACTTTGAGCCATCTTTCTACCAAGATACTCAGGTTAACATTGCCCTTCCAAGAAAGTCTACACAGTCTGCTCCCTCCCTGCTCCTCCTAGGGAGTTTCTGTTTATTTTGATTCCATGGAGGTCTTTTTTATTCTATATTTAAATGTATTGTGTCTCAGTTGTACATCCTATCAGCTAGGTATGCCTAATTTTTATTTGAATAGCTTAAAATAGTATGTGTAATGATTTAAAGGAATTAATAAATTGAACAGTAACAAAAGCAGTATTTACTTGGATAGGCTACTTTAGGAAATTTTAGAGTCATGATACTATGAGGAAGAGAAAAATTCTTTCTAGTGGACATTCCAAAGGA	-			P-0060393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	65	110	0	ENST00000282441.5:c.996_1032+469del		p.X332_splice	ENST00000282441	NM_001130145.2	332																																																																																
BRCA2	675	MSKCC	GRCh37	13	32911316	32911329	+	frameshift_variant	Frame_Shift_Del	DEL	TCAATTAAAAAAGA	TCAATTAAAAAAGA	-			P-0060393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	85	82	0	ENST00000380152.3:c.2825_2838del	p.Ser942PhefsTer12	p.S942Ffs*12	ENST00000380152		942	TCAATTAAAAAAGAt/t																																																																															
MAX	4149	MSKCC	GRCh37	14	65544710	65544710	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			867	372	179	0	ENST00000358664.4:c.216G>C	p.Gln72His	p.Q72H	ENST00000358664	NM_002382.4	72	caG/caC																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279777	46279777	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0060393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			2319	251	136	0	ENST00000371998.3:c.3703A>C	p.Ser1235Arg	p.S1235R	ENST00000371998		1235	Agt/Cgt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411977	63411977	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	140	228	0	ENST00000330258.3:c.1190T>C	p.Val397Ala	p.V397A	ENST00000330258	NM_152424.3	397	gTt/gCt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0060464-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			617	369	771	0	ENST00000346208.3:c.1220_1221insA	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044967	47044967	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0060483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1003	215	902	1	ENST00000329236.7:c.2059C>T	p.Arg687Ter	p.R687*	ENST00000329236	NM_001204466.1	687	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692900	89692900	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1114167645		P-0060483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	132	267	0	ENST00000371953.3:c.384G>C	p.Lys128Asn	p.K128N	ENST00000371953	NM_000314.4	128	aaG/aaC																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0060483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			740	69	491	0	ENST00000257430.4:c.4063del	p.Ser1355LeufsTer60	p.S1355Lfs*60	ENST00000257430	NM_000038.5	1354	Ttt/tt																																																																															
KDR	3791	MSKCC	GRCh37	4	55955906	55955906	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	72	428	0	ENST00000263923.4:c.3256A>G	p.Ser1086Gly	p.S1086G	ENST00000263923	NM_002253.2	1086	Agt/Ggt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs760043106		P-0060531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1046	53	692	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564119	139564119	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780712884		P-0060531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			773	55	529	0	ENST00000308874.7:c.259G>A	p.Ala87Thr	p.A87T	ENST00000308874		87	Gcg/Acg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057230	180057230	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780661773		P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	75	512	1	ENST00000261937.6:c.508C>T	p.Arg170Cys	p.R170C	ENST00000261937	NM_182925.4	170	Cgc/Tgc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144589	55144589	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	33	378	0	ENST00000257290.5:c.2063A>C	p.Lys688Thr	p.K688T	ENST00000257290	NM_006206.4	688	aAg/aCg																																																																															
HGF	3082	MSKCC	GRCh37	7	81372768	81372768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			706	225	420	0	ENST00000222390.5:c.766G>T	p.Asp256Tyr	p.D256Y	ENST00000222390	NM_000601.4	256	Gat/Tat																																																																															
HGF	3082	MSKCC	GRCh37	7	81372707	81372707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	156	399	0	ENST00000222390.5:c.827C>A	p.Pro276His	p.P276H	ENST00000222390	NM_000601.4	276	cCt/cAt																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14020477	14020477	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145402255		P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	184	432	0	ENST00000311895.7:c.448C>T	p.Arg150Cys	p.R150C	ENST00000311895	NM_005236.2	150	Cgc/Tgc																																																																															
EP300	2033	MSKCC	GRCh37	22	41525927	41525927	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	40	292	0	ENST00000263253.7:c.1202C>A	p.Ser401Ter	p.S401*	ENST00000263253	NM_001429.3	401	tCa/tAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023274	27023274	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	139	467	0	ENST00000324856.7:c.380G>C	p.Gly127Ala	p.G127A	ENST00000324856	NM_006015.4	127	gGc/gCc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46527745	46527745	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	136	239	0	ENST00000262741.5:c.622-2A>T		p.X208_splice	ENST00000262741	NM_003629.3	208																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120466577	120466577	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	45	463	0	ENST00000256646.2:c.4542A>C	p.Lys1514Asn	p.K1514N	ENST00000256646	NM_024408.3	1514	aaA/aaC																																																																															
RET	5979	MSKCC	GRCh37	10	43608412	43608412	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			819	189	834	0	ENST00000355710.3:c.1759+1G>T		p.X587_splice	ENST00000355710	NM_020975.4	587																																																																																
GAB2	9846	MSKCC	GRCh37	11	77991659	77991659	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			782	126	486	0	ENST00000361507.4:c.364G>C	p.Glu122Gln	p.E122Q	ENST00000361507	NM_080491.2	122	Gag/Cag																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125507343	125507343	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	149	242	0	ENST00000428830.2:c.719-1G>A		p.X240_splice	ENST00000428830	NM_001114121.2	240																																																																																
ARID2	196528	MSKCC	GRCh37	12	46298727	46298727	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	141	322	0	ENST00000334344.6:c.5374A>T	p.Arg1792Ter	p.R1792*	ENST00000334344	NM_152641.2	1792	Aga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118799	115118799	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	301	535	0	ENST00000257566.3:c.542C>A	p.Pro181Gln	p.P181Q	ENST00000257566	NM_016569.3	181	cCa/cAa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30108043	30108043	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	150	317	0	ENST00000331968.5:c.764G>C	p.Arg255Pro	p.R255P	ENST00000331968	NM_002742.2	255	cGa/cCa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569714	95569714	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			767	91	503	1	ENST00000343455.3:c.4019A>T	p.Glu1340Val	p.E1340V	ENST00000343455	NM_177438.2	1340	gAg/gTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472437	88472437	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	261	512	0	ENST00000360948.2:c.2118C>G	p.Ser706Arg	p.S706R	ENST00000360948	NM_001012338.2	706	agC/agG																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858251	9858251	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	282	572	0	ENST00000330684.3:c.3150G>C	p.Arg1050Ser	p.R1050S	ENST00000330684	NM_001134407.1	1050	agG/agC																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274073	10274073	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			795	79	572	0	ENST00000330684.3:c.196G>C	p.Asp66His	p.D66H	ENST00000330684	NM_001134407.1	66	Gac/Cac																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347480	89347480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	431	648	0	ENST00000301030.4:c.5470C>A	p.Pro1824Thr	p.P1824T	ENST00000301030	NM_001256183.1	1824	Ccc/Acc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89838090	89838090	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	359	552	0	ENST00000389301.3:c.2147A>T	p.His716Leu	p.H716L	ENST00000389301	NM_000135.2	716	cAc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576889	7576904	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTGGCTGGGGAGAG	CTTTGGCTGGGGAGAG	-			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	191	675	0	ENST00000269305.4:c.942_957del	p.Ser315ArgfsTer25	p.S315Rfs*25	ENST00000269305	NM_001126112.2	314	tcCTCTCCCCAGCCAAAG/tc																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679559	33679559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376285868		P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	464	518	0	ENST00000308377.4:c.2522C>T	p.Ala841Val	p.A841V	ENST00000308377	NM_152270.3	841	gCa/gTa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761066	59761066	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	43	419	0	ENST00000259008.2:c.3341A>T	p.Gln1114Leu	p.Q1114L	ENST00000259008	NM_032043.2	1114	cAg/cTg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763304	59763304	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	45	458	0	ENST00000259008.2:c.2798A>G	p.Asn933Ser	p.N933S	ENST00000259008	NM_032043.2	933	aAt/aGt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955193	17955193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	229	501	2	ENST00000458235.1:c.34C>A	p.Pro12Thr	p.P12T	ENST00000458235	NM_000215.3	12	Cct/Act																																																																															
MSH2	4436	MSKCC	GRCh37	2	47635681	47635681	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	45	290	0	ENST00000233146.2:c.353A>T	p.Tyr118Phe	p.Y118F	ENST00000233146	NM_000251.2	118	tAt/tTt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499497	89499497	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	279	475	0	ENST00000336596.2:c.2667G>T	p.Lys889Asn	p.K889N	ENST00000336596	NM_005233.5	889	aaG/aaT																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876388	35876388	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			734	500	583	2	ENST00000303115.3:c.1180G>T	p.Gly394Cys	p.G394C	ENST00000303115	NM_002185.3	394	Ggc/Tgc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2983910	2983910	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			896	205	450	0	ENST00000396946.4:c.620G>T	p.Arg207Leu	p.R207L	ENST00000396946	NM_032415.4	207	cGc/cTc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444413	50444413	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			863	222	502	0	ENST00000331340.3:c.343G>C	p.Gly115Arg	p.G115R	ENST00000331340	NM_006060.4	115	Gga/Cga																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046431	69046431	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			708	86	432	0	ENST00000288368.4:c.3904G>C	p.Glu1302Gln	p.E1302Q	ENST00000288368	NM_024870.2	1302	Gaa/Caa																																																																															
AGO2	27161	MSKCC	GRCh37	8	141551426	141551426	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	364	422	0	ENST00000220592.5:c.1871G>T	p.Arg624Leu	p.R624L	ENST00000220592	NM_012154.3	624	cGc/cTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486095	8486095	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	115	570	0	ENST00000356435.5:c.2722G>T	p.Val908Leu	p.V908L	ENST00000356435		908	Gtg/Ttg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401270	139401270	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	301	612	0	ENST00000277541.6:c.3799del	p.Asp1267MetfsTer178	p.D1267Mfs*178	ENST00000277541	NM_017617.3	1267	Gat/at																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153271229	153271229	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AA			P-0060661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	53	281	0	ENST00000281708.4:c.549delinsTT	p.Leu183PhefsTer73	p.L183Ffs*73	ENST00000281708	NM_033632.3	183	ttG/ttTT																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0060677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	71	349	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0060677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	122	459	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
BARD1	580	MSKCC	GRCh37	2	215595163	215595163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377227840		P-0060677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	89	422	0	ENST00000260947.4:c.1973G>A	p.Arg658His	p.R658H	ENST00000260947	NM_000465.2	658	cGc/cAc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185183567	185183567	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199572011		P-0060677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	89	442	0	ENST00000265026.3:c.1421G>A	p.Arg474Gln	p.R474Q	ENST00000265026	NM_004721.4	474	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087555	27087555	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1171422700		P-0060677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	62	603	0	ENST00000324856.7:c.2129G>A	p.Arg710His	p.R710H	ENST00000324856	NM_006015.4	710	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0060823-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	206	534	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0060823-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	298	459	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0060823-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	73	350	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11186802	11186802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060823-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	96	496	0	ENST00000361445.4:c.6403G>T	p.Asp2135Tyr	p.D2135Y	ENST00000361445	NM_004958.3	2135	Gac/Tac																																																																															
KDR	3791	MSKCC	GRCh37	4	55955043	55955043	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060823-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	81	435	0	ENST00000263923.4:c.3502G>T	p.Ala1168Ser	p.A1168S	ENST00000263923	NM_002253.2	1168	Gct/Tct																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845262	151845262	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747850540		P-0060823-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	417	682	0	ENST00000262189.6:c.13750C>T	p.Arg4584Trp	p.R4584W	ENST00000262189	NM_170606.2	4584	Cgg/Tgg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662226	227662226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060823-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	336	795	0	ENST00000305123.5:c.1229G>A	p.Arg410Gln	p.R410Q	ENST00000305123	NM_005544.2	410	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0060830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	188	710	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0060830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	40	405	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0060830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	80	645	0	ENST00000257430.4:c.4192_4193del	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
NF2	4771	MSKCC	GRCh37	22	30038233	30038233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	64	464	0	ENST00000338641.4:c.406G>A	p.Glu136Lys	p.E136K	ENST00000338641	NM_000268.3	136	Gag/Aag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099552	157099552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			878	93	655	0	ENST00000346085.5:c.489G>T	p.Lys163Asn	p.K163N	ENST00000346085	NM_020732.3	163	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0060877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	346	671	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0060877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	58	566	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0060877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	89	484	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119884	70119884	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0060877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	335	700	0	ENST00000245479.2:c.886C>T	p.Gln296Ter	p.Q296*	ENST00000245479	NM_000346.3	296	Cag/Tag																																																																															
B2M	567	MSKCC	GRCh37	15	45003749	45003749	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs368160918		P-0060877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	131	591	0	ENST00000558401.1:c.5C>G	p.Ser2Cys	p.S2C	ENST00000558401	NM_004048.2	2	tCt/tGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0060918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	34	235	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0060918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	56	529	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0060918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	74	422	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0060918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	12	319	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0060918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	48	491	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048632	180048632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	60	669	2	ENST00000261937.6:c.1930G>A	p.Ala644Thr	p.A644T	ENST00000261937	NM_182925.4	644	Gcg/Acg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563012	21563012	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371362441		P-0060918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			795	58	834	1	ENST00000382592.4:c.907G>A	p.Ala303Thr	p.A303T	ENST00000382592	NM_014572.2	303	Gct/Act																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971039	21971039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	60	660	0	ENST00000304494.5:c.319C>T	p.Arg107Cys	p.R107C	ENST00000304494	NM_000077.4	107	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27102089	27102090	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0060918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	78	555	0	ENST00000324856.7:c.5016_5017dup	p.Met1673LysfsTer2	p.M1673Kfs*2	ENST00000324856	NM_006015.4	1672	gta/gtAAa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852443	63852443	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	251	687	0	ENST00000279873.7:c.3221C>G	p.Ser1074Cys	p.S1074C	ENST00000279873	NM_032199.2	1074	tCc/tGc																																																																															
NF1	4763	MSKCC	GRCh37	17	29587412	29587412	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0060918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	40	334	1	ENST00000358273.4:c.4456T>A	p.Cys1486Ser	p.C1486S	ENST00000358273	NM_001042492.2	1486	Tgt/Agt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127460	55127460	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779332376		P-0060951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	129	463	3	ENST00000257290.5:c.248C>T	p.Thr83Met	p.T83M	ENST00000257290	NM_006206.4	83	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578232	7578232	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0060951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	532	611	0	ENST00000269305.4:c.617T>A	p.Leu206Ter	p.L206*	ENST00000269305	NM_001126112.2	206	tTg/tAg																																																																															
SRC	6714	MSKCC	GRCh37	20	36026152	36026152	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0060951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			750	246	587	0	ENST00000358208.4:c.754A>C	p.Lys252Gln	p.K252Q	ENST00000358208		252	Aag/Cag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86679542	86679542	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0060951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			52	80	203	0	ENST00000274376.6:c.2703T>A	p.Phe901Leu	p.F901L	ENST00000274376	NM_002890.2	901	ttT/ttA																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858047	152858047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			740	181	590	0	ENST00000406277.2:c.568G>A	p.Ala190Thr	p.A190T	ENST00000406277	NM_152274.4	190	Gcc/Acc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	258	482	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0037968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	386	713	1	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																															
MGA	23269	MSKCC	GRCh37	15	42052626	42052626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	154	582	4	ENST00000219905.7:c.7297C>T	p.Arg2433Trp	p.R2433W	ENST00000219905	NM_001164273.1	2433	Cgg/Tgg																																																																															
KDR	3791	MSKCC	GRCh37	4	55948737	55948737	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150847930		P-0037968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	91	675	0	ENST00000263923.4:c.3728C>T	p.Pro1243Leu	p.P1243L	ENST00000263923	NM_002253.2	1243	cCg/cTg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176132959	176132959	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	166	486	0	ENST00000367669.3:c.634A>C	p.Ser212Arg	p.S212R	ENST00000367669	NM_022457.5	212	Agt/Cgt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969817	81969817	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	81	618	0	ENST00000359376.3:c.2886G>C	p.Lys962Asn	p.K962N	ENST00000359376	NM_002661.3	962	aaG/aaC																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836417	89836417	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1242381795		P-0037968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	271	613	0	ENST00000389301.3:c.2332G>A	p.Ala778Thr	p.A778T	ENST00000389301	NM_000135.2	778	Gcc/Acc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097131	11097131	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748298484		P-0037968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	372	851	0	ENST00000344626.4:c.622C>T	p.Arg208Trp	p.R208W	ENST00000344626	NM_003072.3	208	Cgg/Tgg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117663651	117663651	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	55	488	0	ENST00000368508.3:c.4581G>C	p.Met1527Ile	p.M1527I	ENST00000368508	NM_002944.2	1527	atG/atC																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987388	2987388	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1192456063		P-0037968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	252	600	0	ENST00000396946.4:c.41C>T	p.Thr14Met	p.T14M	ENST00000396946	NM_032415.4	14	aCg/aTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274171	10274171	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs960622904		P-0038044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	99	562	0	ENST00000330684.3:c.98C>T	p.Ala33Val	p.A33V	ENST00000330684	NM_001134407.1	33	gCg/gTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11177076	11177076	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	51	430	0	ENST00000361445.4:c.7001del	p.Leu2334Ter	p.L2334*	ENST00000361445	NM_004958.3	2334	tTa/ta																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935714	13935716	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TGA	TGA	-			P-0038044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	116	393	0	ENST00000405192.2:c.1144-4_1144-2del		p.X382_splice	ENST00000405192	NM_001163147.1	382																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	263	394	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735458	40735458	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1243407933		P-0038162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1201	581	655	1	ENST00000373198.4:c.3415C>T	p.Arg1139Trp	p.R1139W	ENST00000373198	NM_133170.3	1139	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578476	7578477	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGTGT			P-0038162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	652	827	0	ENST00000269305.4:c.448_453dup	p.Thr150_Pro151dup	p.T150_P151dup	ENST00000269305	NM_001126112.2	150	-/ACACCC																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174395	11174395	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	121	820	0	ENST00000361445.4:c.7280T>G	p.Leu2427Arg	p.L2427R	ENST00000361445	NM_004958.3	2427	cTg/cGg																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66737033	66737033	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	230	585	0	ENST00000307102.5:c.556A>T	p.Ile186Phe	p.I186F	ENST00000307102	NM_002755.3	186	Atc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0038349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	160	799	1	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521543	8521543	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868728165		P-0038349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	101	503	0	ENST00000356435.5:c.695G>A	p.Arg232His	p.R232H	ENST00000356435		232	cGc/cAc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455090	50455090	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	87	423	1	ENST00000331340.3:c.637C>T	p.Arg213Ter	p.R213*	ENST00000331340	NM_006060.4	213	Cga/Tga																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	263	425	0				ENST00000310581	NM_198253.2																																																																																	
ATRX	546	MSKCC	GRCh37	X	76938948	76938948	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	139	714	0	ENST00000373344.5:c.1800T>G	p.Ile600Met	p.I600M	ENST00000373344	NM_000489.3	600	atT/atG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0038436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	122	498	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934573		P-0038436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	212	674	0	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130268	11130268	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	127	586	0	ENST00000344626.4:c.2507G>A	p.Gly836Glu	p.G836E	ENST00000344626	NM_003072.3	836	gGa/gAa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37871562	37871562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748700504		P-0038436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	137	845	2	ENST00000269571.5:c.1172C>T	p.Pro391Leu	p.P391L	ENST00000269571		391	cCg/cTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120496288	120496288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782151048		P-0038436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	104	528	0	ENST00000256646.2:c.2243G>A	p.Gly748Asp	p.G748D	ENST00000256646	NM_024408.3	748	gGc/gAc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193107284	193107284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	79	413	0	ENST00000367435.3:c.493G>A	p.Val165Ile	p.V165I	ENST00000367435	NM_024529.4	165	Gta/Ata																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0038514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	285	552	2	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0038514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	354	881	1	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
TSC1	7248	MSKCC	GRCh37	9	135801080	135801080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	116	710	0	ENST00000298552.3:c.257G>A	p.Arg86His	p.R86H	ENST00000298552	NM_001162426.1	86	cGt/cAt																																																																															
RET	5979	MSKCC	GRCh37	10	43615117	43615117	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55947360		P-0038514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	123	1085	0	ENST00000355710.3:c.2531G>A	p.Arg844Gln	p.R844Q	ENST00000355710	NM_020975.4	844	cGg/cAg																																																																															
TERT	7015	MSKCC	GRCh37	5	1279449	1279449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756152343		P-0038514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	81	1169	1	ENST00000310581.5:c.2087G>A	p.Arg696His	p.R696H	ENST00000310581	NM_198253.2	696	cGt/cAt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675668	86675669	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0038514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	213	431	0	ENST00000274376.6:c.2603+2dup		p.X868_splice	ENST00000274376	NM_002890.2	868																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44922682	44922682	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	101	253	0	ENST00000377967.4:c.1543G>C	p.Val515Leu	p.V515L	ENST00000377967	NM_021140.2	515	Gtt/Ctt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	558	496	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30103666	30103666	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1434071220		P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	44	390	0	ENST00000331968.5:c.1272G>A	p.Met424Ile	p.M424I	ENST00000331968	NM_002742.2	424	atG/atA																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435374	18435374	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs369286185		P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	126	222	0	ENST00000266497.5:c.359C>A	p.Thr120Lys	p.T120K	ENST00000266497		120	aCg/aAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229346	36229346	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1452431678		P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	83	422	4	ENST00000222270.7:c.8036G>A	p.Arg2679His	p.R2679H	ENST00000222270	NM_014727.1	2679	cGc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55266446	55266446	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	383	420	0	ENST00000275493.2:c.2738A>T	p.Lys913Met	p.K913M	ENST00000275493	NM_005228.3	913	aAg/aTg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72076752	72076752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	457	413	0	ENST00000357731.5:c.745G>T	p.Gly249Cys	p.G249C	ENST00000357731	NM_173808.2	249	Ggt/Tgt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396362	139396362	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	610	575	0	ENST00000277541.6:c.5476G>T	p.Glu1826Ter	p.E1826*	ENST00000277541	NM_017617.3	1826	Gag/Tag																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39322688	39322688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	532	364	0	ENST00000373001.3:c.304G>A	p.Asp102Asn	p.D102N	ENST00000373001	NM_022157.3	102	Gat/Aat																																																																															
SDHC	6391	MSKCC	GRCh37	1	161293439	161293439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	130	240	0	ENST00000367975.2:c.56G>A	p.Ser19Asn	p.S19N	ENST00000367975	NM_003001.3	19	aGc/aAc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724418	162724418	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1261100286		P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	149	279	0	ENST00000367921.3:c.190G>A	p.Asp64Asn	p.D64N	ENST00000367921	NM_006182.2	64	Gac/Aac																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748457	162748457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	620	276	0	ENST00000367921.3:c.2371C>A	p.Gln791Lys	p.Q791K	ENST00000367921	NM_006182.2	791	Cag/Aag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136180	64136180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	477	506	0	ENST00000334205.4:c.1339G>A	p.Glu447Lys	p.E447K	ENST00000334205	NM_003942.2	447	Gag/Aag																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022660	12022660	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	201	414	0	ENST00000396373.4:c.766T>G	p.Ser256Ala	p.S256A	ENST00000396373	NM_001987.4	256	Tcc/Gcc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865807	57865807	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	189	470	0	ENST00000228682.2:c.3284T>C	p.Leu1095Pro	p.L1095P	ENST00000228682	NM_005269.2	1095	cTa/cCa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557717	21557717	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	628	538	0	ENST00000382592.4:c.2128del	p.Val710TrpfsTer35	p.V710Wfs*35	ENST00000382592	NM_014572.2	710	Gtg/tg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436355	110436355	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	383	361	0	ENST00000375856.3:c.2046C>G	p.Ser682Arg	p.S682R	ENST00000375856	NM_003749.2	682	agC/agG																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30093394	30093394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	273	365	0	ENST00000331968.5:c.1869A>T	p.Gln623His	p.Q623H	ENST00000331968	NM_002742.2	623	caA/caT																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88669547	88669547	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	171	323	0	ENST00000360948.2:c.1351G>T	p.Val451Phe	p.V451F	ENST00000360948	NM_001012338.2	451	Gtc/Ttc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348068	89348068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	695	716	1	ENST00000301030.4:c.4882G>A	p.Asp1628Asn	p.D1628N	ENST00000301030	NM_001256183.1	1628	Gac/Aac																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58677824	58677824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	525	522	2	ENST00000305921.3:c.49G>A	p.Gly17Arg	p.G17R	ENST00000305921	NM_003620.3	17	Ggg/Agg																																																																															
STK11	6794	MSKCC	GRCh37	19	1223020	1223020	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	1155	547	0	ENST00000326873.7:c.957del	p.Val320CysfsTer16	p.V320Cfs*16	ENST00000326873	NM_000455.4	319	ccA/cc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152016	11152016	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	563	409	0	ENST00000344626.4:c.4204G>T	p.Glu1402Ter	p.E1402*	ENST00000344626	NM_003072.3	1402	Gag/Tag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292444	15292444	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	919	578	0	ENST00000263388.2:c.2735G>T	p.Cys912Phe	p.C912F	ENST00000263388	NM_000435.2	912	tGc/tTc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279578	18279578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	815	580	0	ENST00000222254.8:c.1851C>A	p.His617Gln	p.H617Q	ENST00000222254	NM_005027.3	617	caC/caA																																																																															
ALK	238	MSKCC	GRCh37	2	29498270	29498270	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	269	326	1	ENST00000389048.3:c.1910C>A	p.Thr637Asn	p.T637N	ENST00000389048	NM_004304.4	637	aCc/aAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739118	40739118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	389	374	0	ENST00000373198.4:c.3166C>T	p.His1056Tyr	p.H1056Y	ENST00000373198	NM_133170.3	1056	Cat/Tat																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143043301	143043301	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	62	234	0	ENST00000262992.4:c.2115G>T	p.Leu705Phe	p.L705F	ENST00000262992	NM_001101669.1	705	ttG/ttT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628987	187628987	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	75	344	0	ENST00000441802.2:c.1995del	p.Ser666ValfsTer5	p.S666Vfs*5	ENST00000441802	NM_005245.3	665	gcC/gc																																																																															
TERT	7015	MSKCC	GRCh37	5	1278821	1278821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150819225		P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1441	478	496	0	ENST00000310581.5:c.2221G>A	p.Val741Met	p.V741M	ENST00000310581	NM_198253.2	741	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112176343	112176343	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	84	271	0	ENST00000257430.4:c.5052T>A	p.Phe1684Leu	p.F1684L	ENST00000257430	NM_000038.5	1684	ttT/ttA																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449859	149449859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	307	580	0	ENST00000286301.3:c.1205C>T	p.Pro402Leu	p.P402L	ENST00000286301	NM_005211.3	402	cCa/cTa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497230	149497231	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	193	526	0	ENST00000261799.4:c.3087dup	p.Pro1030ThrfsTer5	p.P1030Tfs*5	ENST00000261799	NM_002609.3	1029	-/A																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158731	26158731	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	453	337	1	ENST00000289316.2:c.334G>T	p.Val112Leu	p.V112L	ENST00000289316	NM_138720.2	112	Gtg/Ttg																																																																															
FYN	2534	MSKCC	GRCh37	6	112041184	112041184	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	187	346	0	ENST00000368678.4:c.71A>G	p.Gln24Arg	p.Q24R	ENST00000368678		24	cAg/cGg																																																																															
PAX5	5079	MSKCC	GRCh37	9	36923478	36923478	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	483	474	0	ENST00000358127.4:c.784A>G	p.Thr262Ala	p.T262A	ENST00000358127	NM_001280556.1	262	Aca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0038588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	154	569	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs79184941		P-0038588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	30	324	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178948136	178948136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	27	182	0	ENST00000263967.3:c.2908G>A	p.Glu970Lys	p.E970K	ENST00000263967	NM_006218.2	970	Gaa/Aaa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589555	67589557	+	inframe_deletion	In_Frame_Del	DEL	GAT	GAT	-			P-0038588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	37	187	0	ENST00000274335.5:c.1318_1320del	p.Asp440del	p.D440del	ENST00000274335		440	GAT/-																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222796	5222796	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756049037		P-0038588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	76	506	0	ENST00000357368.4:c.3007G>A	p.Asp1003Asn	p.D1003N	ENST00000357368	NM_002850.3	1003	Gac/Aac																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048166	180048166	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1369049878		P-0038588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	91	659	0	ENST00000261937.6:c.2107G>A	p.Gly703Arg	p.G703R	ENST00000261937	NM_182925.4	703	Gga/Aga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717679	89717679	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	94	440	0	ENST00000371953.3:c.705del	p.Asp236ThrfsTer20	p.D236Tfs*20	ENST00000371953	NM_000314.4	235	gAa/ga																																																																															
CBL	867	MSKCC	GRCh37	11	119156083	119156083	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	154	560	0	ENST00000264033.4:c.1748C>G	p.Ser583Cys	p.S583C	ENST00000264033	NM_005188.3	583	tCt/tGt																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217236	7217236	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	155	585	0	ENST00000380728.2:c.469C>T	p.Gln157Ter	p.Q157*	ENST00000380728		157	Caa/Taa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513512	149513512	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	72	506	0	ENST00000261799.4:c.691del	p.Ile231SerfsTer7	p.I231Sfs*7	ENST00000261799	NM_002609.3	231	Atc/tc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971173	21971173	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	143	325	0	ENST00000304494.5:c.185T>C	p.Leu62Pro	p.L62P	ENST00000304494	NM_000077.4	62	cTg/cCg																																																																															
RB1	5925	MSKCC	GRCh37	13	48955465	48955467	+	inframe_deletion	In_Frame_Del	DEL	TTT	TTT	-			P-0038798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	153	341	0	ENST00000267163.4:c.1583_1585del	p.Phe528del	p.F528del	ENST00000267163	NM_000321.2	527	gaTTTt/gat																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3794922	3794922	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	47	394	0	ENST00000262367.5:c.3955C>T	p.Arg1319Ter	p.R1319*	ENST00000262367	NM_004380.2	1319	Cga/Tga																																																																															
BRD4	23476	MSKCC	GRCh37	19	15378326	15378326	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	143	243	0	ENST00000263377.2:c.460G>C	p.Glu154Gln	p.E154Q	ENST00000263377	NM_058243.2	154	Gaa/Caa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2956999	2956999	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	198	509	0	ENST00000396946.4:c.2628A>C	p.Glu876Asp	p.E876D	ENST00000396946	NM_032415.4	876	gaA/gaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0038819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	294	362	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572002	64572002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779413959		P-0038819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	323	726	7	ENST00000337652.1:c.1652C>T	p.Pro551Leu	p.P551L	ENST00000337652	NM_130803.2	551	cCg/cTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519852		P-0038819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	245	468	1	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894916	101894916	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1060502040		P-0038819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	121	291	0	ENST00000374994.4:c.469C>T	p.Arg157Ter	p.R157*	ENST00000374994	NM_004612.2	157	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0039295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	279	431	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1264586	1264586	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs547377569		P-0039295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	192	528	0	ENST00000310581.5:c.2776G>A	p.Gly926Ser	p.G926S	ENST00000310581	NM_198253.2	926	Ggc/Agc																																																																															
PARP1	142	MSKCC	GRCh37	1	226595555	226595555	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	75	354	0	ENST00000366794.5:c.76G>C	p.Glu26Gln	p.E26Q	ENST00000366794	NM_001618.3	26	Gag/Cag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088677	27088677	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0039564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	45	632	0	ENST00000324856.7:c.2286C>G	p.Tyr762Ter	p.Y762*	ENST00000324856	NM_006015.4	762	taC/taG																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43771650	43771650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	76	549	1	ENST00000382044.4:c.733G>A	p.Ala245Thr	p.A245T	ENST00000382044	NM_001141980.1	245	Gca/Aca																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786890	135786893	+	frameshift_variant	Frame_Shift_Del	DEL	GTAG	GTAG	AGT			P-0039564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	30	429	1	ENST00000298552.3:c.976_979delinsACT	p.Leu326ThrfsTer5	p.L326Tfs*5	ENST00000298552	NM_001162426.1	326	CTACct/ACTct																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31374366	31374366	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757657111		P-0039604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	287	641	0	ENST00000328111.2:c.365G>A	p.Arg122His	p.R122H	ENST00000328111	NM_006892.3	122	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0039604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	137	263	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575168	48575168	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0039604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	146	264	0	ENST00000342988.3:c.362T>G	p.Leu121Ter	p.L121*	ENST00000342988	NM_005359.5	121	tTa/tGa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467978	50467978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	239	544	0	ENST00000331340.3:c.1213G>A	p.Glu405Lys	p.E405K	ENST00000331340	NM_006060.4	405	Gag/Aag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222222	53222222	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782534108		P-0039604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	181	959	0	ENST00000375401.3:c.4610C>T	p.Ser1537Leu	p.S1537L	ENST00000375401	NM_004187.3	1537	tCg/tTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5273455	5273455	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs758669308		P-0039630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	250	923	1	ENST00000357368.4:c.377G>A	p.Arg126Gln	p.R126Q	ENST00000357368	NM_002850.3	126	cGa/cAa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171709	36171736	+	frameshift_variant	Frame_Shift_Del	DEL	GGTAGGACTGATCGTAGGACCACGGTGG	GGTAGGACTGATCGTAGGACCACGGTGG	-			P-0039630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	47	594	0	ENST00000300305.3:c.829_856del	p.Pro277AsnfsTer25	p.P277Nfs*25	ENST00000300305		277	CCACCGTGGTCCTACGATCAGTCCTACCaa/aa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2979529	2979529	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	153	666	0	ENST00000396946.4:c.718G>C	p.Glu240Gln	p.E240Q	ENST00000396946	NM_032415.4	240	Gag/Cag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0039644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	378	386	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0039644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	263	823	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224357	36224357	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1640	205	1142	0	ENST00000222270.7:c.6907G>C	p.Asp2303His	p.D2303H	ENST00000222270	NM_014727.1	2303	Gat/Cat																																																																															
BCOR	54880	MSKCC	GRCh37	X	39914722	39914722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	100	294	0	ENST00000378444.4:c.4640G>A	p.Arg1547Gln	p.R1547Q	ENST00000378444	NM_001123385.1	1547	cGa/cAa																																																																															
BTK	695	MSKCC	GRCh37	X	100608960	100608960	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	80	252	0	ENST00000308731.7:c.1648G>T	p.Glu550Ter	p.E550*	ENST00000308731	NM_000061.2	550	Gaa/Taa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11189895	11189895	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	27	472	0	ENST00000361445.4:c.5614G>C	p.Asp1872His	p.D1872H	ENST00000361445	NM_004958.3	1872	Gat/Cat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27059215	27059215	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	52	554	0	ENST00000324856.7:c.1852A>G	p.Met618Val	p.M618V	ENST00000324856	NM_006015.4	618	Atg/Gtg																																																																															
PGR	5241	MSKCC	GRCh37	11	100962520	100962520	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	50	527	0	ENST00000325455.5:c.1877A>T	p.Lys626Met	p.K626M	ENST00000325455	NM_001202474.3	626	aAg/aTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285612	46285612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	79	365	0	ENST00000334344.6:c.4972G>A	p.Gly1658Arg	p.G1658R	ENST00000334344	NM_152641.2	1658	Gga/Aga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2108770	2108770	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	69	761	1	ENST00000219476.3:c.871C>A	p.Leu291Met	p.L291M	ENST00000219476	NM_000548.3	291	Ctg/Atg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226166	2226166	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	96	936	0	ENST00000326181.6:c.1863C>A	p.Tyr621Ter	p.Y621*	ENST00000326181	NM_032271.2	621	taC/taA																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984534	72984534	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	169	936	1	ENST00000268489.5:c.3050A>T	p.His1017Leu	p.H1017L	ENST00000268489	NM_006885.3	1017	cAc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	DEL	C	C	-			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	224	869	0	ENST00000269305.4:c.376-1del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
NCOR1	9611	MSKCC	GRCh37	17	16022782	16022782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	96	387	0	ENST00000268712.3:c.1870G>A	p.Glu624Lys	p.E624K	ENST00000268712	NM_006311.3	624	Gag/Aag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2207598	2207599	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	192	803	2	ENST00000398665.3:c.882_883delinsTT	p.Glu295Ter	p.E295*	ENST00000398665	NM_032482.2	294	gtGGag/gtTTag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602322	10602322	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs779729664		P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	241	1018	0	ENST00000171111.5:c.1256G>C	p.Gly419Ala	p.G419A	ENST00000171111	NM_203500.1	419	gGg/gCg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11107188	11107188	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	159	710	1	ENST00000344626.4:c.1780G>T	p.Gly594Ter	p.G594*	ENST00000344626	NM_003072.3	594	Gga/Tga																																																																															
CIC	23152	MSKCC	GRCh37	19	42799342	42799342	+	stop_lost	Nonstop_Mutation	SNP	G	G	T			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	73	386	0	ENST00000575354.2:c.4826G>T	p.Ter1609LeuextTer63	p.*1609Lext*63	ENST00000575354	NM_015125.3	1609	tGa/tTa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022283	31022283	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	84	393	0	ENST00000375687.4:c.1768A>G	p.Thr590Ala	p.T590A	ENST00000375687	NM_015338.5	590	Act/Gct																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933708	49933708	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	77	991	0	ENST00000296474.3:c.2569T>C	p.Phe857Leu	p.F857L	ENST00000296474	NM_002447.2	857	Ttt/Ctt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205023	128205023	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	69	857	0	ENST00000341105.2:c.418G>C	p.Val140Leu	p.V140L	ENST00000341105	NM_032638.4	140	Gtg/Ctg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32185028	32185028	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs140082058		P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	159	764	1	ENST00000375023.3:c.1640G>T	p.Arg547Leu	p.R547L	ENST00000375023	NM_004557.3	547	cGa/cTa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982102	93982102	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	85	439	0	ENST00000369303.4:c.1363C>G	p.Leu455Val	p.L455V	ENST00000369303	NM_004440.3	455	Ctg/Gtg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453081	140453081	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	70	342	0	ENST00000288602.6:c.1854G>T	p.Leu618Phe	p.L618F	ENST00000288602	NM_004333.4	618	ttG/ttT																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0039657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	53	283	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	217	688	0	ENST00000346208.3:c.1220dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729515	41729515	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	193	681	0	ENST00000242208.4:c.1014G>C	p.Trp338Cys	p.W338C	ENST00000242208	NM_002192.2	338	tgG/tgC																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233525	69233525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	153	369	0	ENST00000462284.1:c.1390C>T	p.Leu464Phe	p.L464F	ENST00000462284	NM_002392.5	464	Ctt/Ttt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32969019	32969020	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0039706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	156	371	0	ENST00000380152.3:c.9452_9453del	p.Lys3151ArgfsTer16	p.K3151Rfs*16	ENST00000380152		3150	ccAAaa/ccaa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828423	72828423	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	205	626	0	ENST00000268489.5:c.8158T>C	p.Phe2720Leu	p.F2720L	ENST00000268489	NM_006885.3	2720	Ttc/Ctc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934231	49934231	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs768326110		P-0039706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	260	870	0	ENST00000296474.3:c.2276C>A	p.Pro759His	p.P759H	ENST00000296474	NM_002447.2	759	cCt/cAt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026111	71026111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	186	395	0	ENST00000318789.4:c.1511G>A	p.Arg504His	p.R504H	ENST00000318789	NM_032682.5	504	cGc/cAc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680291	30680291	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	259	842	0	ENST00000376406.3:c.1428G>C	p.Lys476Asn	p.K476N	ENST00000376406	NM_014641.2	476	aaG/aaC																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411920	63411920	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1460320166		P-0039706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	316	1091	0	ENST00000330258.3:c.1247A>G	p.Tyr416Cys	p.Y416C	ENST00000330258	NM_152424.3	416	tAt/tGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0039732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	82	121	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944178	71944178	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs748455961		P-0039732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	208	944	0	ENST00000298229.2:c.2011T>C	p.Tyr671His	p.Y671H	ENST00000298229	NM_001567.3	671	Tat/Cat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900017	151900017	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0039732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	67	101	0	ENST00000262189.6:c.4092+2T>G		p.X1364_splice	ENST00000262189	NM_170606.2	1364																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139396760	139396760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	274	1226	0	ENST00000277541.6:c.5348G>A	p.Arg1783Gln	p.R1783Q	ENST00000277541	NM_017617.3	1783	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0039738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	215	728	8	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112170683	112170683	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	80	313	0	ENST00000257430.4:c.1779G>A	p.Trp593Ter	p.W593*	ENST00000257430	NM_000038.5	593	tgG/tgA																																																																															
RB1	5925	MSKCC	GRCh37	13	48939040	48939041	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0039738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	25	100	0	ENST00000267163.4:c.873_874del	p.Tyr292PhefsTer17	p.Y292Ffs*17	ENST00000267163	NM_000321.2	291	gTT/g																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204737446	204737447	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0039738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	53	296	0	ENST00000302823.3:c.583_584delinsAA	p.Pro195Asn	p.P195N	ENST00000302823	NM_005214.4	195	CCt/AAt																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505015	186505015	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	98	304	0	ENST00000323963.5:c.871G>T	p.Glu291Ter	p.E291*	ENST00000323963		291	Gag/Tag																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38975650	38975650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	68	433	0	ENST00000357387.3:c.878G>T	p.Arg293Leu	p.R293L	ENST00000357387	NM_152756.3	293	cGa/cTa																																																																															
APC	324	MSKCC	GRCh37	5	112176959	112176959	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1060503265		P-0039738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	79	279	1	ENST00000257430.4:c.5668T>C	p.Ser1890Pro	p.S1890P	ENST00000257430	NM_000038.5	1890	Tca/Cca																																																																															
NSD1	64324	MSKCC	GRCh37	5	176710800	176710800	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	36	329	0	ENST00000439151.2:c.6022G>C	p.Asp2008His	p.D2008H	ENST00000439151	NM_022455.4	2008	Gat/Cat																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205112	38205112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	117	539	0	ENST00000317025.8:c.578G>A	p.Arg193Lys	p.R193K	ENST00000317025	NM_023034.1	193	aGa/aAa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65301888	65301888	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039776-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			165	16	371	0	ENST00000342505.4:c.3151G>C	p.Glu1051Gln	p.E1051Q	ENST00000342505	NM_002227.2	1051	Gaa/Caa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65309866	65309866	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039776-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			241	27	509	0	ENST00000342505.4:c.2284G>C	p.Glu762Gln	p.E762Q	ENST00000342505	NM_002227.2	762	Gag/Cag																																																																															
GAB2	9846	MSKCC	GRCh37	11	78128764	78128764	+	start_lost	Translation_Start_Site	SNP	C	C	G			P-0039776-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			429	58	690	0	ENST00000361507.4:c.3G>C	p.Met1?	p.M1?	ENST00000361507	NM_080491.2	1	atG/atC																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632636	3632636	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs556217576		P-0039776-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			463	61	642	0	ENST00000294008.3:c.5212G>A	p.Gly1738Arg	p.G1738R	ENST00000294008	NM_032444.2	1738	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519975		P-0039776-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			229	84	697	0	ENST00000269305.4:c.403T>C	p.Cys135Arg	p.C135R	ENST00000269305	NM_001126112.2	135	Tgc/Cgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303277	15303277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039776-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			314	21	634	0	ENST00000263388.2:c.251C>T	p.Ser84Leu	p.S84L	ENST00000263388	NM_000435.2	84	tCa/tTa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220868	36220868	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039776-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			584	66	519	0	ENST00000222270.7:c.4918C>T	p.Arg1640Cys	p.R1640C	ENST00000222270	NM_014727.1	1640	Cgc/Tgc																																																																															
ALK	238	MSKCC	GRCh37	2	29917736	29917736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150966028		P-0039776-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			305	26	528	1	ENST00000389048.3:c.932G>A	p.Arg311His	p.R311H	ENST00000389048	NM_004304.4	311	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0039776-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			238	303	452	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748066	41748066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039776-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			163	39	290	0	ENST00000226382.2:c.703G>A	p.Glu235Lys	p.E235K	ENST00000226382	NM_003924.3	235	Gaa/Aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628235	187628235	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039776-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			213	13	655	0	ENST00000441802.2:c.2747C>G	p.Ser916Ter	p.S916*	ENST00000441802	NM_005245.3	916	tCa/tGa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155725	56155726	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0039776-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			143	152	398	0	ENST00000399503.3:c.819_820del	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	273	AGa/a																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197136	26197136	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs535488676		P-0039776-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	112	808	0	ENST00000356476.2:c.343G>T	p.Ala115Ser	p.A115S	ENST00000356476		115	Gcc/Tcc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93974393	93974393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039776-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			169	43	281	0	ENST00000369303.4:c.1661C>T	p.Pro554Leu	p.P554L	ENST00000369303	NM_004440.3	554	cCt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0039794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	52	358	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984848	11984848	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0039794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	128	330	0	ENST00000353533.5:c.393+1G>A		p.X131_splice	ENST00000353533	NM_003010.3	131																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0039794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	158	408	1	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
TP53	7157	MSKCC	GRCh37	17	7577561	7577561	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	203	527	0	ENST00000269305.4:c.720T>A	p.Ser240Arg	p.S240R	ENST00000269305	NM_001126112.2	240	agT/agA																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115280675	115280675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	71	394	0	ENST00000438362.2:c.356T>C	p.Val119Ala	p.V119A	ENST00000438362	NM_001242891.1	119	gTa/gCa																																																																															
RET	5979	MSKCC	GRCh37	10	43604650	43604650	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	79	567	0	ENST00000355710.3:c.1235T>C	p.Val412Ala	p.V412A	ENST00000355710	NM_020975.4	412	gTg/gCg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603127	48603127	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	63	388	0	ENST00000342988.3:c.1428del	p.Gly477GlufsTer2	p.G477Efs*2	ENST00000342988	NM_005359.5	476	ggT/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0039853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	648	968	1	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
NF1	4763	MSKCC	GRCh37	17	29486070	29486070	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs746824139		P-0039853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	363	387	0	ENST00000358273.4:c.247C>T	p.Gln83Ter	p.Q83*	ENST00000358273	NM_001042492.2	83	Cag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29661946	29661946	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868094590		P-0039853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	605	495	1	ENST00000358273.4:c.5903G>A	p.Arg1968Gln	p.R1968Q	ENST00000358273	NM_001042492.2	1968	cGa/cAa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9778894	9778894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	321	648	0	ENST00000377346.4:c.1163C>T	p.Ala388Val	p.A388V	ENST00000377346	NM_005026.3	388	gCc/gTc																																																																															
ATM	472	MSKCC	GRCh37	11	108098423	108098423	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0039853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	39	410	0	ENST00000278616.4:c.72G>C	p.Lys24Asn	p.K24N	ENST00000278616	NM_000051.3	24	aaG/aaC																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552716	18552716	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	493	613	0	ENST00000266497.5:c.2127G>T	p.Met709Ile	p.M709I	ENST00000266497		709	atG/atT																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3827660	3827660	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0039853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	88	385	1	ENST00000262367.5:c.2114-2A>G		p.X705_splice	ENST00000262367	NM_004380.2	705																																																																																
FANCA	2175	MSKCC	GRCh37	16	89836306	89836306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	424	829	0	ENST00000389301.3:c.2443C>T	p.Pro815Ser	p.P815S	ENST00000389301	NM_000135.2	815	Cct/Tct																																																																															
ATR	545	MSKCC	GRCh37	3	142217590	142217590	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0039853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	33	518	0	ENST00000350721.4:c.5407A>T	p.Arg1803Ter	p.R1803*	ENST00000350721	NM_001184.3	1803	Aga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230913	66230937	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAATTCACCTTGTGATAAAGATGAA	AAATTCACCTTGTGATAAAGATGAA	-			P-0039853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	20	391	0	ENST00000273854.3:c.2051-17_2058del		p.X684_splice	ENST00000273854	NM_004439.5	684																																																																																
PREX2	80243	MSKCC	GRCh37	8	69021651	69021651	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0039853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1173	344	446	0	ENST00000288368.4:c.2939G>T	p.Gly980Val	p.G980V	ENST00000288368	NM_024870.2	980	gGg/gTg																																																																															
SDHC	6391	MSKCC	GRCh37	1	161326556	161326556	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	44	185	0	ENST00000367975.2:c.331G>T	p.Ala111Ser	p.A111S	ENST00000367975	NM_003001.3	111	Gca/Tca																																																																															
DDR2	4921	MSKCC	GRCh37	1	162722914	162722914	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	328	624	0	ENST00000367921.3:c.112G>T	p.Gly38Ter	p.G38*	ENST00000367921	NM_006182.2	38	Gga/Tga																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716134	243716134	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	144	625	0	ENST00000263826.5:c.1060C>G	p.Leu354Val	p.L354V	ENST00000263826	NM_005465.4	354	Ctt/Gtt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115790	8115790	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	420	630	0	ENST00000346208.3:c.1136A>T	p.His379Leu	p.H379L	ENST00000346208		379	cAt/cTt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115803	8115803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	315	619	0	ENST00000346208.3:c.1149G>T	p.Glu383Asp	p.E383D	ENST00000346208		383	gaG/gaT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448089	49448089	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	140	496	0	ENST00000301067.7:c.510+1G>A		p.X170_splice	ENST00000301067	NM_003482.3	170																																																																																
MDM2	4193	MSKCC	GRCh37	12	69233078	69233078	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	131	330	0	ENST00000462284.1:c.943A>G	p.Asn315Asp	p.N315D	ENST00000462284	NM_002392.5	315	Aat/Gat																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103528225	103528225	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	92	321	0	ENST00000355739.4:c.3533G>T	p.Arg1178Leu	p.R1178L	ENST00000355739	NM_000123.3	1178	cGt/cTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032128	10032128	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	89	709	0	ENST00000330684.3:c.695C>G	p.Ser232Cys	p.S232C	ENST00000330684	NM_001134407.1	232	tCc/tGc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30129400	30129400	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	86	772	0	ENST00000263025.4:c.628T>C	p.Tyr210His	p.Y210H	ENST00000263025	NM_002746.2	210	Tac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	1014	837	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59861713	59861713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	228	496	0	ENST00000259008.2:c.1546G>A	p.Val516Ile	p.V516I	ENST00000259008	NM_032043.2	516	Gta/Ata																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11129661	11129661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	514	747	1	ENST00000344626.4:c.2467G>A	p.Asp823Asn	p.D823N	ENST00000344626	NM_003072.3	823	Gac/Aac																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023962	31023962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	177	666	0	ENST00000375687.4:c.3447G>A	p.Met1149Ile	p.M1149I	ENST00000375687	NM_015338.5	1149	atG/atA																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44514823	44514823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	200	583	0	ENST00000291552.4:c.424G>T	p.Ala142Ser	p.A142S	ENST00000291552	NM_006758.2	142	Gcc/Tcc																																																																															
TP63	8626	MSKCC	GRCh37	3	189526100	189526100	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	639	642	0	ENST00000264731.3:c.364C>A	p.Gln122Lys	p.Q122K	ENST00000264731	NM_003722.4	122	Cag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1254515	1254524	+	frameshift_variant	Frame_Shift_Del	DEL	GTGACACGGT	GTGACACGGT	-			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1862	104	981	0	ENST00000310581.5:c.3254_3263del	p.His1085ProfsTer16	p.H1085Pfs*16	ENST00000310581	NM_198253.2	1085	cACCGTGTCACc/cc																																																																															
TERT	7015	MSKCC	GRCh37	5	1279534	1279534	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1810	250	961	0	ENST00000310581.5:c.2002G>T	p.Glu668Ter	p.E668*	ENST00000310581	NM_198253.2	668	Gag/Tag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184096	56184096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	33	406	0	ENST00000399503.3:c.4301G>T	p.Ser1434Ile	p.S1434I	ENST00000399503	NM_005921.1	1434	aGt/aTt																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36651959	36651959	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762818650		P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	212	671	1	ENST00000244741.5:c.81C>A	p.Ser27Arg	p.S27R	ENST00000244741	NM_000389.4	27	agC/agA																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953012	2953012	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	215	798	0	ENST00000396946.4:c.2928del	p.Val977CysfsTer88	p.V977Cfs*88	ENST00000396946	NM_032415.4	976	ccC/cc																																																																															
MET	4233	MSKCC	GRCh37	7	116340029	116340029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	78	334	0	ENST00000397752.3:c.891G>T	p.Glu297Asp	p.E297D	ENST00000397752	NM_000245.2	297	gaG/gaT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412055	63412055	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747944110		P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	186	812	0	ENST00000330258.3:c.1112A>G	p.Glu371Gly	p.E371G	ENST00000330258	NM_152424.3	371	gAg/gGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579406	7579406	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	231	790	0	ENST00000269305.4:c.281C>A	p.Ser94Ter	p.S94*	ENST00000269305	NM_001126112.2	94	tCa/tAa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78897445	78897445	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1334868419		P-0040032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	57	713	0	ENST00000306801.3:c.2780G>A	p.Arg927Gln	p.R927Q	ENST00000306801	NM_020761.2	927	cGg/cAg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143226689	143226689	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs149208667		P-0040032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	97	310	0	ENST00000262992.4:c.425G>A	p.Arg142Gln	p.R142Q	ENST00000262992	NM_001101669.1	142	cGa/cAa																																																																															
CDK4	1019	MSKCC	GRCh37	12	58143273	58143273	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	40	336	2	ENST00000257904.6:c.647G>C	p.Gly216Ala	p.G216A	ENST00000257904	NM_000075.3	216	gGa/gCa																																																																															
TET1	80312	MSKCC	GRCh37	10	70442624	70442624	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755430373		P-0040032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	96	476	0	ENST00000373644.4:c.4946G>A	p.Arg1649Gln	p.R1649Q	ENST00000373644	NM_030625.2	1649	cGg/cAg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	465622	465622	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2724	171	563	0	ENST00000399788.2:c.754G>T	p.Ala252Ser	p.A252S	ENST00000399788	NM_001042603.1	252	Gca/Tca																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18439796	18439796	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	29	339	0	ENST00000266497.5:c.694A>C	p.Ile232Leu	p.I232L	ENST00000266497		232	Att/Ctt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436322	110436322	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	104	331	0	ENST00000375856.3:c.2079G>T	p.Arg693Ser	p.R693S	ENST00000375856	NM_003749.2	693	agG/agT																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987012	36987012	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	176	582	0	ENST00000354822.5:c.677G>T	p.Ser226Ile	p.S226I	ENST00000354822	NM_001079668.2	226	aGc/aTc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534319	63534549	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCTCTCGGATCTGCTGCAGGCGCTCCTCCAGGCTGTGGCGGCTCTCCAACTCCAGCTTCAGCTTTTCCAGCCTCGAGATCAGCTCAGCTGCAAAGGTGGCGGGTTCCACGGGGGTCATCTCCTTGGGCAGGCGGTGGGTTCTCTACAGGACGTGGAAAGGAAAGGGAGGAGGCACGTTCAGCAGGCTAGGTGGGCGGTGGCTTGGCCGGAGCTTCCCGCACCAGGCGCTG	ACCTCTCGGATCTGCTGCAGGCGCTCCTCCAGGCTGTGGCGGCTCTCCAACTCCAGCTTCAGCTTTTCCAGCCTCGAGATCAGCTCAGCTGCAAAGGTGGCGGGTTCCACGGGGGTCATCTCCTTGGGCAGGCGGTGGGTTCTCTACAGGACGTGGAAAGGAAAGGGAGGAGGCACGTTCAGCAGGCTAGGTGGGCGGTGGCTTGGCCGGAGCTTCCCGCACCAGGCGCTG	-			P-0040032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	108	693	0	ENST00000307078.5:c.1060-88_1200+2del		p.X354_splice	ENST00000307078	NM_004655.3	354																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0040328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	15	279	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	181	644	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	186	515	0	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589663	67589663	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587777709		P-0040328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	23	161	0	ENST00000274335.5:c.1425+1G>A		p.X475_splice	ENST00000274335		475																																																																																
CIC	23152	MSKCC	GRCh37	19	42791190	42791190	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1225908345		P-0040328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	229	784	2	ENST00000575354.2:c.250C>T	p.Arg84Trp	p.R84W	ENST00000575354	NM_015125.3	84	Cgg/Tgg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223810	2223810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	203	873	2	ENST00000326181.6:c.1108G>A	p.Ala370Thr	p.A370T	ENST00000326181	NM_032271.2	370	Gcg/Acg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291104	10291104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	185	664	0	ENST00000340748.4:c.367G>A	p.Ala123Thr	p.A123T	ENST00000340748		123	Gca/Aca																																																																															
CDK4	1019	MSKCC	GRCh37	12	58144533	58144533	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs375372343		P-0040328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	80	347	0	ENST00000257904.6:c.538T>C	p.Tyr180His	p.Y180H	ENST00000257904	NM_000075.3	180	Tac/Cac																																																																															
POLE	5426	MSKCC	GRCh37	12	133233825	133233825	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757902862		P-0040328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	224	747	1	ENST00000320574.5:c.3479G>A	p.Arg1160His	p.R1160H	ENST00000320574	NM_006231.2	1160	cGt/cAt																																																																															
CD276	80381	MSKCC	GRCh37	15	73995395	73995395	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs774649242		P-0040328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	275	474	0	ENST00000318443.5:c.701C>G	p.Ser234Cys	p.S234C	ENST00000318443	NM_001024736.1	234	tCt/tGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68842735	68842735	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201511530		P-0040328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	159	371	0	ENST00000261769.5:c.671G>A	p.Arg224His	p.R224H	ENST00000261769	NM_004360.3	224	cGc/cAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41573344	41573344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779646635		P-0040328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	216	706	0	ENST00000263253.7:c.5629C>T	p.Pro1877Ser	p.P1877S	ENST00000263253	NM_001429.3	1877	Cct/Tct																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52713589	52713589	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0040328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	123	344	0	ENST00000394830.3:c.138+1G>T		p.X46_splice	ENST00000394830	NM_018313.4	46																																																																																
PREX2	80243	MSKCC	GRCh37	8	69028047	69028047	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	179	379	0	ENST00000288368.4:c.3206T>C	p.Ile1069Thr	p.I1069T	ENST00000288368	NM_024870.2	1069	aTa/aCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0040350-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			283	97	432	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519991		P-0040350-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			413	146	808	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212483964	212483964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040350-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			118	39	470	0	ENST00000342788.4:c.2239C>T	p.Pro747Ser	p.P747S	ENST00000342788	NM_005235.2	747	Cct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0040366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	10	332	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
CDH1	999	MSKCC	GRCh37	16	68853288	68853288	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	55	366	0	ENST00000261769.5:c.1671G>C	p.Lys557Asn	p.K557N	ENST00000261769	NM_004360.3	557	aaG/aaC																																																																															
APC	324	MSKCC	GRCh37	5	112176739	112176739	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	17	128	0	ENST00000257430.4:c.5448G>C	p.Leu1816Phe	p.L1816F	ENST00000257430	NM_000038.5	1816	ttG/ttC																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610498	10610498	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	111	413	1	ENST00000171111.5:c.212G>T	p.Arg71Leu	p.R71L	ENST00000171111	NM_203500.1	71	cGg/cTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81925096	81925096	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867804190		P-0040366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	33	278	0	ENST00000359376.3:c.887C>T	p.Ser296Leu	p.S296L	ENST00000359376	NM_002661.3	296	tCa/tTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106069	27106069	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	27	347	0	ENST00000324856.7:c.5680C>T	p.Gln1894Ter	p.Q1894*	ENST00000324856	NM_006015.4	1894	Cag/Tag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484436	57484436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	41	286	0	ENST00000371085.3:c.617G>A	p.Gly206Glu	p.G206E	ENST00000371085	NM_000516.4	206	gGa/gAa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104700	69104700	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149428879		P-0040366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	76	362	0	ENST00000288368.4:c.4544C>T	p.Ser1515Leu	p.S1515L	ENST00000288368	NM_024870.2	1515	tCg/tTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436052	56436052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	84	315	0	ENST00000407977.2:c.1085C>A	p.Ser362Tyr	p.S362Y	ENST00000407977		362	tCc/tAc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027529	48027529	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	37	185	0	ENST00000234420.5:c.2407G>C	p.Asp803His	p.D803H	ENST00000234420	NM_000179.2	803	Gac/Cac																																																																															
MET	4233	MSKCC	GRCh37	7	116340144	116340144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	37	158	0	ENST00000397752.3:c.1006A>G	p.Ser336Gly	p.S336G	ENST00000397752	NM_000245.2	336	Agc/Ggc																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5549382	5549382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	101	360	0	ENST00000397747.3:c.409G>A	p.Asp137Asn	p.D137N	ENST00000397747	NM_025239.3	137	Gat/Aat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376083	8376083	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1337096946		P-0040366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	17	148	0	ENST00000356435.5:c.4514C>T	p.Ser1505Leu	p.S1505L	ENST00000356435		1505	tCa/tTa																																																																															
AR	367	MSKCC	GRCh37	X	66931333	66931333	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0040366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	20	161	0	ENST00000374690.3:c.1975A>T	p.Lys659Ter	p.K659*	ENST00000374690	NM_000044.3	659	Aag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720649	89720649	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T	rs587782455		P-0040413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	42	189	1	ENST00000371953.3:c.802-2A>T		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																																
MAP2K4	6416	MSKCC	GRCh37	17	12028682	12028683	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	111	354	0	ENST00000353533.5:c.886dup	p.Thr296AsnfsTer4	p.T296Nfs*4	ENST00000353533	NM_003010.3	295	-/A																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119886	70119886	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	70	461	0	ENST00000245479.2:c.888G>T	p.Gln296His	p.Q296H	ENST00000245479	NM_000346.3	296	caG/caT																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10247926	10247926	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139918621		P-0040413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	56	571	0	ENST00000340748.4:c.4276C>T	p.Arg1426Trp	p.R1426W	ENST00000340748		1426	Cgg/Tgg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308112	30308112	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	82	650	0	ENST00000262643.3:c.249T>A	p.Asp83Glu	p.D83E	ENST00000262643	NM_001238.2	83	gaT/gaA																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936532	49936533	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0040413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	74	699	1	ENST00000296474.3:c.1394_1395delinsTT	p.Gly465Val	p.G465V	ENST00000296474	NM_002447.2	465	gGC/gTT																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175957472	175957472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	65	389	0	ENST00000367669.3:c.1924G>A	p.Glu642Lys	p.E642K	ENST00000367669	NM_022457.5	642	Gaa/Aaa																																																																															
IL10	3586	MSKCC	GRCh37	1	206942002	206942002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	52	272	0	ENST00000423557.1:c.516G>A	p.Met172Ile	p.M172I	ENST00000423557	NM_000572.2	172	atG/atA																																																																															
FH	2271	MSKCC	GRCh37	1	241675413	241675413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	58	228	0	ENST00000366560.3:c.409C>T	p.Pro137Ser	p.P137S	ENST00000366560	NM_000143.3	137	Cct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577093	7577119	+	inframe_deletion	In_Frame_Del	DEL	CGGTCTCTCCCAGGACAGGCACAAACA	CGGTCTCTCCCAGGACAGGCACAAACA	-			P-0040788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	194	678	0	ENST00000269305.4:c.819_845del	p.Val274_Arg282del	p.V274_R282del	ENST00000269305	NM_001126112.2	273	cgTGTTTGTGCCTGTCCTGGGAGAGACCGg/cgg																																																																															
YES1	7525	MSKCC	GRCh37	18	746014	746014	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	65	376	0	ENST00000314574.4:c.508A>G	p.Arg170Gly	p.R170G	ENST00000314574	NM_005433.3	170	Aga/Gga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221326	36221326	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	142	697	0	ENST00000222270.7:c.5160G>C	p.Leu1720Phe	p.L1720F	ENST00000222270	NM_014727.1	1720	ttG/ttC																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251698	212251698	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	80	356	0	ENST00000342788.4:c.3361G>C	p.Glu1121Gln	p.E1121Q	ENST00000342788	NM_005235.2	1121	Gag/Cag																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252902	36252902	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	137	320	0	ENST00000300305.3:c.460C>T	p.Gln154Ter	p.Q154*	ENST00000300305		154	Cag/Tag																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259215	36259237	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGCGCACCAGCTCGCCCGGGT	GGTGCGCACCAGCTCGCCCGGGT	-			P-0040788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	250	640	0	ENST00000300305.3:c.254_276del	p.His85ArgfsTer45	p.H85Rfs*45	ENST00000300305		85	cACCCGGGCGAGCTGGTGCGCACC/c																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89156947	89156947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	70	459	0	ENST00000336596.2:c.49G>A	p.Asp17Asn	p.D17N	ENST00000336596	NM_005233.5	17	Gac/Aac																																																																															
APC	324	MSKCC	GRCh37	5	112174218	112174218	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	52	318	0	ENST00000257430.4:c.2927G>C	p.Arg976Thr	p.R976T	ENST00000257430	NM_000038.5	976	aGa/aCa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552789	106552789	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	98	541	0	ENST00000369096.4:c.754G>T	p.Glu252Ter	p.E252*	ENST00000369096	NM_001198.3	252	Gaa/Taa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710944	117710944	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1287758562		P-0040788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	66	295	0	ENST00000368508.3:c.1328G>T	p.Cys443Phe	p.C443F	ENST00000368508	NM_002944.2	443	tGt/tTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152055726	152055726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	94	421	0	ENST00000262189.6:c.196G>A	p.Glu66Lys	p.E66K	ENST00000262189	NM_170606.2	66	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs267605076		P-0040965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	226	749	0	ENST00000269305.4:c.672G>T	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaT																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731202	162731202	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs766637472		P-0040965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	40	448	1	ENST00000367921.3:c.1057G>T	p.Ala353Ser	p.A353S	ENST00000367921	NM_006182.2	353	Gca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0040988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	168	800	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
YAP1	10413	MSKCC	GRCh37	11	102056833	102056844	+	inframe_deletion	In_Frame_Del	DEL	GGCTAGACCCAA	GGCTAGACCCAA	-			P-0040988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	67	558	0	ENST00000282441.5:c.777_788del	p.Leu263_Arg266del	p.L263_R266del	ENST00000282441	NM_001130145.2	258	tGGCTAGACCCAAgg/tgg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41256966	41256966	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs80357234		P-0040988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	81	488	0	ENST00000357654.3:c.220C>T	p.Gln74Ter	p.Q74*	ENST00000357654	NM_007294.3	74	Caa/Taa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938399	44938405	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTTCT	CTTTTCT	-			P-0040988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	79	424	0	ENST00000377967.4:c.2949_2955del	p.Phe984LeufsTer13	p.F984Lfs*13	ENST00000377967	NM_021140.2	983	CTTTTCTct/ct																																																																															
STAG2	10735	MSKCC	GRCh37	X	123217312	123217312	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	133	527	0	ENST00000218089.9:c.2966G>T	p.Gly989Val	p.G989V	ENST00000218089	NM_001042749.1	989	gGg/gTg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781878	9781878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	230	1102	1	ENST00000377346.4:c.2015G>A	p.Cys672Tyr	p.C672Y	ENST00000377346	NM_005026.3	672	tGc/tAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	26	102	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057937	27057937	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	211	813	0	ENST00000324856.7:c.1650del	p.Tyr551ThrfsTer68	p.Y551Tfs*68	ENST00000324856	NM_006015.4	549	Ccc/cc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36941090	36941090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	208	899	0	ENST00000361632.4:c.249G>T	p.Gln83His	p.Q83H	ENST00000361632		83	caG/caT																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78433329	78433329	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs537242451		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	148	479	2	ENST00000370768.2:c.272C>T	p.Pro91Leu	p.P91L	ENST00000370768	NM_003902.3	91	cCg/cTg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163315481	163315481	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	84	445	0	ENST00000271452.3:c.821A>C	p.Glu274Ala	p.E274A	ENST00000271452	NM_145697.2	274	gAg/gCg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	250	990	4	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																															
RET	5979	MSKCC	GRCh37	10	43604533	43604533	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs546866208		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	263	969	1	ENST00000355710.3:c.1118C>T	p.Ala373Val	p.A373V	ENST00000355710	NM_020975.4	373	gCg/gTg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63661491	63661491	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	111	385	0	ENST00000279873.7:c.21+2T>C		p.X7_splice	ENST00000279873	NM_032199.2	7																																																																																
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	74	423	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683144	88683144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	128	599	0	ENST00000372037.3:c.1354G>A	p.Glu452Lys	p.E452K	ENST00000372037	NM_004329.2	452	Gaa/Aaa																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683253	88683253	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	152	844	0	ENST00000372037.3:c.1463A>G	p.Asn488Ser	p.N488S	ENST00000372037	NM_004329.2	488	aAc/aGc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114799886	114799886	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs377242639		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	209	680	0	ENST00000543371.1:c.552+1G>A		p.X184_splice	ENST00000543371	NM_001198531.1	184																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	326	582	11	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
LMO1	4004	MSKCC	GRCh37	11	8284885	8284885	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	115	648	3	ENST00000335790.3:c.25G>A	p.Gly9Ser	p.G9S	ENST00000335790	NM_002315.2	9	Ggc/Agc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200877	67200877	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	244	906	1	ENST00000312629.5:c.870del	p.Tyr291ThrfsTer14	p.Y291Tfs*14	ENST00000312629	NM_003952.2	289	Ccc/cc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944515	71944515	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs878853123		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	209	902	1	ENST00000298229.2:c.2071C>T	p.Arg691Trp	p.R691W	ENST00000298229	NM_001567.3	691	Cgg/Tgg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115385	115115386	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	177	637	0	ENST00000257566.3:c.940dup	p.Arg314LysfsTer13	p.R314Kfs*13	ENST00000257566	NM_016569.3	314	aga/aAga																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	241	1003	11	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73334684	73334684	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	84	334	0	ENST00000377767.4:c.2776T>C	p.Ser926Pro	p.S926P	ENST00000377767	NM_014953.3	926	Tcc/Ccc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355942	73355942	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	257	958	1	ENST00000377767.4:c.29del	p.Lys10ArgfsTer7	p.K10Rfs*7	ENST00000377767	NM_014953.3	10	aAg/ag																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518645	103518645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	106	386	0	ENST00000355739.4:c.2233G>A	p.Ala745Thr	p.A745T	ENST00000355739	NM_000123.3	745	Gca/Aca																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609957	81609957	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756016910		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	111	439	0	ENST00000298171.2:c.1555C>T	p.Arg519Cys	p.R519C	ENST00000298171	NM_000369.2	519	Cgc/Tgc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38614463	38614463	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	114	523	0	ENST00000299084.4:c.234del	p.Asp79ThrfsTer42	p.D79Tfs*42	ENST00000299084	NM_152594.2	77	Aaa/aa																																																																															
MGA	23269	MSKCC	GRCh37	15	41961400	41961400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	150	564	0	ENST00000219905.7:c.308G>A	p.Arg103His	p.R103H	ENST00000219905	NM_001164273.1	103	cGc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42019477	42019477	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	176	699	0	ENST00000219905.7:c.3530C>A	p.Pro1177His	p.P1177H	ENST00000219905	NM_001164273.1	1177	cCt/cAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42028735	42028735	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	161	685	0	ENST00000219905.7:c.4276del	p.Met1426TrpfsTer15	p.M1426Wfs*15	ENST00000219905	NM_001164273.1	1425	Aaa/aa																																																																															
CD276	80381	MSKCC	GRCh37	15	73996790	73996790	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775147523		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	128	467	0	ENST00000318443.5:c.1346C>T	p.Ala449Val	p.A449V	ENST00000318443	NM_001024736.1	449	gCg/gTg																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	118	627	10	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347924	347924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756071423		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	328	1309	0	ENST00000262320.3:c.1582G>A	p.Gly528Ser	p.G528S	ENST00000262320	NM_003502.3	528	Ggc/Agc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788617	3788617	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519884		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	188	526	1	ENST00000262367.5:c.4337G>A	p.Arg1446His	p.R1446H	ENST00000262367	NM_004380.2	1446	cGc/cAc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	176	628	1	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822585	72822586	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs764626362		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	45	689	0	ENST00000268489.5:c.9589dup	p.Gln3197ProfsTer42	p.Q3197Pfs*42	ENST00000268489	NM_006885.3	3197	cag/cCag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357101	89357101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	283	910	1	ENST00000301030.4:c.533G>A	p.Arg178His	p.R178H	ENST00000301030	NM_001256183.1	178	cGc/cAc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89877120	89877120	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	155	449	0	ENST00000389301.3:c.517del	p.Ile173TyrfsTer19	p.I173Yfs*19	ENST00000389301	NM_000135.2	173	Ata/ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	252	1013	1	ENST00000269305.4:c.337T>C	p.Phe113Leu	p.F113L	ENST00000269305	NM_001126112.2	113	Ttc/Ctc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7983099	7983099	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	166	724	0	ENST00000319144.4:c.915A>C	p.Gln305His	p.Q305H	ENST00000319144	NM_001139.2	305	caA/caC																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	157	783	10	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428014	33428014	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	209	806	1	ENST00000335858.7:c.609del	p.Thr204ProfsTer35	p.T204Pfs*35	ENST00000335858	NM_133629.2	203	ggG/gg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	212	969	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	224	772	2	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246532	41246532	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs80357618		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	171	801	2	ENST00000357654.3:c.1016del	p.Lys339ArgfsTer2	p.K339Rfs*2	ENST00000357654	NM_007294.3	339	aAg/ag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	230	938	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581306	48581306	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	169	581	0	ENST00000342988.3:c.610T>C	p.Ser204Pro	p.S204P	ENST00000342988	NM_005359.5	204	Tct/Cct																																																																															
MALT1	10892	MSKCC	GRCh37	18	56401588	56401588	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367866327		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	105	447	1	ENST00000348428.3:c.1450G>A	p.Ala484Thr	p.A484T	ENST00000348428	NM_006785.3	484	Gcc/Acc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2213955	2213955	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	267	1017	0	ENST00000398665.3:c.1767C>G	p.Asn589Lys	p.N589K	ENST00000398665	NM_032482.2	589	aaC/aaG																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222490	2222490	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs995952663		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	291	895	1	ENST00000398665.3:c.3322C>T	p.Arg1108Ter	p.R1108*	ENST00000398665	NM_032482.2	1108	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5211698	5211698	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	246	941	0	ENST00000357368.4:c.5137A>G	p.Asn1713Asp	p.N1713D	ENST00000357368	NM_002850.3	1713	Aac/Gac																																																																															
CARM1	10498	MSKCC	GRCh37	19	11018786	11018786	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762459878		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	364	1187	3	ENST00000327064.4:c.418C>T	p.Arg140Trp	p.R140W	ENST00000327064	NM_199141.1	140	Cgg/Tgg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367954	15367954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	232	1055	2	ENST00000263377.2:c.1372C>T	p.Pro458Ser	p.P458S	ENST00000263377	NM_058243.2	458	Ccg/Tcg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18277075	18277075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	216	682	0	ENST00000222254.8:c.1522C>A	p.Arg508Ser	p.R508S	ENST00000222254	NM_005027.3	508	Cgc/Agc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256769	19256769	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	172	704	5	ENST00000162023.5:c.944del	p.Pro315GlnfsTer?	p.P315Qfs*?	ENST00000162023		315	cCa/ca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	291	1247	7	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221276	36221276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	285	954	1	ENST00000222270.7:c.5110C>T	p.Arg1704Cys	p.R1704C	ENST00000222270	NM_014727.1	1704	Cgc/Tgc																																																																															
AXL	558	MSKCC	GRCh37	19	41727880	41727880	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756018335		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	301	1157	2	ENST00000301178.4:c.505G>A	p.Val169Met	p.V169M	ENST00000301178	NM_021913.4	169	Gtg/Atg																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	301	607	8	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
CIC	23152	MSKCC	GRCh37	19	42795609	42795609	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	466	1067	7	ENST00000575354.2:c.2694del	p.Ala900ProfsTer24	p.A900Pfs*24	ENST00000575354	NM_015125.3	897	Ccc/cc																																																																															
CIC	23152	MSKCC	GRCh37	19	42796957	42796957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	642	1141	0	ENST00000575354.2:c.3415C>T	p.Pro1139Ser	p.P1139S	ENST00000575354	NM_015125.3	1139	Cca/Tca																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905055	50905055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	198	807	1	ENST00000440232.2:c.342del	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	113	Ggg/gg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910391	50910391	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201038430		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	592	1059	1	ENST00000440232.2:c.1646G>A	p.Arg549His	p.R549H	ENST00000440232	NM_002691.3	549	cGt/cAt																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	316	1261	7	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
ALK	238	MSKCC	GRCh37	2	29456453	29456453	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	233	877	2	ENST00000389048.3:c.2465del	p.Gly822ValfsTer9	p.G822Vfs*9	ENST00000389048	NM_004304.4	822	gGt/gt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48028231	48028231	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	136	430	0	ENST00000234420.5:c.3109T>A	p.Phe1037Ile	p.F1037I	ENST00000234420	NM_000179.2	1037	Ttc/Atc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128050347	128050347	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1479291031		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	110	671	1	ENST00000285398.2:c.310G>A	p.Ala104Thr	p.A104T	ENST00000285398	NM_000122.1	104	Gca/Aca																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719755	190719755	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750449314		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	63	298	0	ENST00000441310.2:c.1757G>A	p.Arg586His	p.R586H	ENST00000441310	NM_000534.4	586	cGt/cAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944554	40944554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	173	634	0	ENST00000373198.4:c.1948del	p.Val650Ter	p.V650*	ENST00000373198	NM_133170.3	650	Gtg/tg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419957	41419957	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369230837		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	220	767	1	ENST00000373198.4:c.364G>A	p.Val122Ile	p.V122I	ENST00000373198	NM_133170.3	122	Gtc/Atc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	126	456	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
MLH1	4292	MSKCC	GRCh37	3	37045935	37045935	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs63750781		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	142	512	0	ENST00000231790.2:c.350C>T	p.Thr117Met	p.T117M	ENST00000231790	NM_000249.3	117	aCg/aTg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067433	37067433	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	175	698	1	ENST00000231790.2:c.1348del	p.Asp450IlefsTer41	p.D450Ifs*41	ENST00000231790	NM_000249.3	448	gaG/ga																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437768	52437768	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs150029305		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	199	898	0	ENST00000460680.1:c.1393A>G	p.Ile465Val	p.I465V	ENST00000460680	NM_004656.3	465	Atc/Gtc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468381	89468381	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754102338		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	102	256	1	ENST00000336596.2:c.1915C>T	p.Arg639Cys	p.R639C	ENST00000336596	NM_005233.5	639	Cgc/Tgc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169953087	169953087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	158	597	0	ENST00000295797.4:c.171G>A	p.Met57Ile	p.M57I	ENST00000295797	NM_002740.5	57	atG/atA																																																																															
KDR	3791	MSKCC	GRCh37	4	55984966	55984966	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	106	466	0	ENST00000263923.4:c.163G>A	p.Gly55Arg	p.G55R	ENST00000263923	NM_002253.2	55	Gga/Aga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535280	66535280	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs527913976		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	239	791	1	ENST00000273854.3:c.181G>A	p.Val61Met	p.V61M	ENST00000273854	NM_004439.5	61	Gtg/Atg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	184	596	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539266	187539266	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	92	459	0	ENST00000441802.2:c.8474del	p.Gly2825GlufsTer4	p.G2825Efs*4	ENST00000441802	NM_005245.3	2825	gGa/ga																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751906	57751906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	180	543	1	ENST00000274289.3:c.1331C>T	p.Ala444Val	p.A444V	ENST00000274289	NM_006622.3	444	gCt/gTt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	282	688	10	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112151262	112151262	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764841552		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	143	480	0	ENST00000257430.4:c.905G>A	p.Arg302Gln	p.R302Q	ENST00000257430	NM_000038.5	302	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112164604	112164604	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	115	340	0	ENST00000257430.4:c.1682del	p.Lys561ArgfsTer9	p.K561Rfs*9	ENST00000257430	NM_000038.5	560	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	116	412	1	ENST00000257430.4:c.4364del	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515273	149515273	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	252	896	0	ENST00000261799.4:c.209del	p.Pro70HisfsTer18	p.P70Hfs*18	ENST00000261799	NM_002609.3	70	cCa/ca																																																																															
NSD1	64324	MSKCC	GRCh37	5	176720865	176720865	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	195	641	0	ENST00000439151.2:c.6496A>G	p.Ile2166Val	p.I2166V	ENST00000439151	NM_022455.4	2166	Atc/Gtc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755445139		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	223	963	1	ENST00000261937.6:c.89dup	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324006	31324006	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41543920		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	33	133	0	ENST00000412585.2:c.557G>A	p.Gly186Asp	p.G186D	ENST00000412585	NM_005514.6	186	gGc/gAc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800512	32800512	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	297	1225	0	ENST00000374899.4:c.1035del	p.Phe345LeufsTer35	p.F345Lfs*35	ENST00000374899	NM_018833.2	345	ttT/tt																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	227	1159	0	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
LATS1	9113	MSKCC	GRCh37	6	149982926	149982926	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777519756		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	111	484	0	ENST00000253339.5:c.3332C>T	p.Ser1111Leu	p.S1111L	ENST00000253339		1111	tCg/tTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157525077	157525077	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1484341574		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	110	362	0	ENST00000346085.5:c.4972A>G	p.Ile1658Val	p.I1658V	ENST00000346085	NM_020732.3	1658	Att/Gtt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	467	1010	9	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2974121	2974121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760308478		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	106	643	0	ENST00000396946.4:c.1484C>T	p.Pro495Leu	p.P495L	ENST00000396946	NM_032415.4	495	cCg/cTg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6045646	6045646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	37	108	0	ENST00000265849.7:c.40G>A	p.Ala14Thr	p.A14T	ENST00000265849	NM_000535.5	14	Gcc/Acc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	181	826	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	300	489	17	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																															
JAK2	3717	MSKCC	GRCh37	9	5073768	5073768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	133	470	0	ENST00000381652.3:c.1847G>A	p.Cys616Tyr	p.C616Y	ENST00000381652	NM_004972.3	616	tGt/tAt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209465	98209465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	238	945	1	ENST00000331920.6:c.4073G>A	p.Gly1358Asp	p.G1358D	ENST00000331920	NM_000264.3	1358	gGc/gAc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797261	135797261	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	84	325	0	ENST00000298552.3:c.608del	p.Leu203CysfsTer7	p.L203Cfs*7	ENST00000298552	NM_001162426.1	203	tTg/tg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390805	139390805	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	148	1156	0	ENST00000277541.6:c.7386del	p.Ala2463ProfsTer14	p.A2463Pfs*14	ENST00000277541	NM_017617.3	2462	ccC/cc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139811026	139811026	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	249	986	1	ENST00000247668.2:c.637C>T	p.Arg213Ter	p.R213*	ENST00000247668	NM_021138.3	213	Cga/Tga																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139820312	139820312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	226	915	0	ENST00000247668.2:c.1465G>A	p.Ala489Thr	p.A489T	ENST00000247668	NM_021138.3	489	Gcc/Acc																																																																															
AR	367	MSKCC	GRCh37	X	66765142	66765142	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747293337		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	147	310	0	ENST00000374690.3:c.154G>A	p.Ala52Thr	p.A52T	ENST00000374690	NM_000044.3	52	Gcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0041193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	1257	582	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs1057517840		P-0041193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	293	765	1	ENST00000269305.4:c.626_627del	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0041210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	139	743	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0041210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	116	472	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578400	7578400	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs751477326		P-0041210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	24	758	0	ENST00000269305.4:c.530C>G	p.Pro177Arg	p.P177R	ENST00000269305	NM_001126112.2	177	cCc/cGc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610363	10610363	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	292	649	0	ENST00000171111.5:c.347G>C	p.Arg116Pro	p.R116P	ENST00000171111	NM_203500.1	116	cGg/cCg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	258	692	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123205071	123205071	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	151	230	0	ENST00000218089.9:c.2431G>T	p.Glu811Ter	p.E811*	ENST00000218089	NM_001042749.1	811	Gag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259227	89259227	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	150	438	0	ENST00000336596.2:c.371A>T	p.Tyr124Phe	p.Y124F	ENST00000336596	NM_005233.5	124	tAc/tTc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097619	8097619	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0041484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	76	241	0	ENST00000346208.3:c.1A>G	p.Met1?	p.M1?	ENST00000346208		1	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	319	905	2	ENST00000269305.4:c.497C>A	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tAa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261448	16261448	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1456771008		P-0041510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	206	786	1	ENST00000375759.3:c.8713G>A	p.Asp2905Asn	p.D2905N	ENST00000375759	NM_015001.2	2905	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112173388	112173388	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1060503282		P-0041510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	138	413	0	ENST00000257430.4:c.2097G>A	p.Trp699Ter	p.W699*	ENST00000257430	NM_000038.5	699	tgG/tgA																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462861	120462861	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1392588923		P-0041510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	150	418	0	ENST00000256646.2:c.5470C>T	p.Arg1824Cys	p.R1824C	ENST00000256646	NM_024408.3	1824	Cgt/Tgt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	422316	422316	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	1516	602	0	ENST00000399788.2:c.2942C>G	p.Ala981Gly	p.A981G	ENST00000399788	NM_001042603.1	981	gCc/gGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593452	48593452	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	34	546	0	ENST00000342988.3:c.1203C>G	p.Cys401Trp	p.C401W	ENST00000342988	NM_005359.5	401	tgC/tgG																																																																															
ALK	238	MSKCC	GRCh37	2	29416647	29416647	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	367	606	0	ENST00000389048.3:c.4306C>G	p.Arg1436Gly	p.R1436G	ENST00000389048	NM_004304.4	1436	Cgc/Ggc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411995	63411997	+	missense_variant	Missense_Mutation	ONP	TCT	TCT	ACA			P-0041510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	200	414	0	ENST00000330258.3:c.1170_1172delinsTGT	p.Leu390_Glu391delinsPheVal	p.L390_E391delinsFV	ENST00000330258	NM_152424.3	390	ttAGAg/ttTGTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0041623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	451	578	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251730	212251730	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	64	353	0	ENST00000342788.4:c.3329C>G	p.Thr1110Ser	p.T1110S	ENST00000342788	NM_005235.2	1110	aCc/aGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0041666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	154	357	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0041666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	147	946	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025570	1025570	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	158	1071	3	ENST00000358495.3:c.805del	p.Arg269GlyfsTer28	p.R269Gfs*28	ENST00000358495	NM_134424.2	269	Cgg/gg																																																																															
RB1	5925	MSKCC	GRCh37	13	48916752	48916752	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	51	329	0	ENST00000267163.4:c.282del	p.Lys96ArgfsTer15	p.K96Rfs*15	ENST00000267163	NM_000321.2	94	aaG/aa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138484	2138484	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs748936673		P-0041666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	84	1169	0	ENST00000219476.3:c.5297C>G	p.Pro1766Arg	p.P1766R	ENST00000219476	NM_000548.3	1766	cCt/cGt																																																																															
EZH2	2146	MSKCC	GRCh37	7	148514430	148514430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	93	499	0	ENST00000320356.2:c.1294C>T	p.Pro432Ser	p.P432S	ENST00000320356	NM_004456.4	432	Cct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0042166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	172	767	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175466	112175466	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs786204170		P-0042166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	87	423	1	ENST00000257430.4:c.4175C>A	p.Ser1392Ter	p.S1392*	ENST00000257430	NM_000038.5	1392	tCa/tAa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969884	81969884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199840870		P-0042166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	186	749	0	ENST00000359376.3:c.2953G>A	p.Val985Ile	p.V985I	ENST00000359376	NM_002661.3	985	Gtc/Atc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581171	48581171	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0042166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	130	392	0	ENST00000342988.3:c.475A>T	p.Lys159Ter	p.K159*	ENST00000342988	NM_005359.5	159	Aag/Tag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30194800	30194800	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	141	707	0	ENST00000331968.5:c.345G>T	p.Gln115His	p.Q115H	ENST00000331968	NM_002742.2	115	caG/caT																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350554	15350554	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199839337		P-0042166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	195	884	0	ENST00000263377.2:c.3361C>T	p.Arg1121Cys	p.R1121C	ENST00000263377	NM_058243.2	1121	Cgc/Tgc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468095	50468095	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	127	613	0	ENST00000331340.3:c.1330A>T	p.Asn444Tyr	p.N444Y	ENST00000331340	NM_006060.4	444	Aac/Tac																																																																															
AGO2	27161	MSKCC	GRCh37	8	141542702	141542702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1271	109	683	0	ENST00000220592.5:c.2284C>T	p.Pro762Ser	p.P762S	ENST00000220592	NM_012154.3	762	Cct/Tct																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0042261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	440	510	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0042261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	92	288	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012397	176012397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	85	304	0	ENST00000367669.3:c.1537G>A	p.Glu513Lys	p.E513K	ENST00000367669	NM_022457.5	513	Gag/Aag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673130	30673130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	210	542	0	ENST00000376406.3:c.3830C>T	p.Ser1277Phe	p.S1277F	ENST00000376406	NM_014641.2	1277	tCt/tTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29528086	29528086	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0042261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	80	230	0	ENST00000358273.4:c.1094C>G	p.Ser365Ter	p.S365*	ENST00000358273	NM_001042492.2	365	tCa/tGa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49422703	49422703	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	225	654	0	ENST00000301067.7:c.14290G>C	p.Glu4764Gln	p.E4764Q	ENST00000301067	NM_003482.3	4764	Gag/Cag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10284510	10284546	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CGTAGAACAAAAAGAAAGGTATAGTAACTATTCTTAC	CGTAGAACAAAAAGAAAGGTATAGTAACTATTCTTAC	-			P-0042261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	15	216	0	ENST00000340748.4:c.635+1_635+37del		p.X212_splice	ENST00000340748		212																																																																																
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326306	62326306	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	C	rs945952564		P-0042261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	291	869	0	ENST00000482936.1:c.3322G>C	p.Glu1108Gln	p.E1108Q	ENST00000482936		1108	Gag/Cag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176618953	176618953	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	184	413	0	ENST00000439151.2:c.996G>C	p.Lys332Asn	p.K332N	ENST00000439151	NM_022455.4	332	aaG/aaC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878754	151878754	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0042261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	85	405	0	ENST00000262189.6:c.6191C>G	p.Ser2064Ter	p.S2064*	ENST00000262189	NM_170606.2	2064	tCa/tGa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949731	151949731	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	147	394	0	ENST00000262189.6:c.1369G>C	p.Asp457His	p.D457H	ENST00000262189	NM_170606.2	457	Gac/Cac																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964526	70964526	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	224	510	0	ENST00000276594.2:c.1502C>G	p.Ser501Cys	p.S501C	ENST00000276594	NM_024504.3	501	tCc/tGc																																																																															
SYK	6850	MSKCC	GRCh37	9	93606214	93606214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	245	608	1	ENST00000375746.1:c.34C>T	p.His12Tyr	p.H12Y	ENST00000375746	NM_001174167.1	12	Cac/Tac																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625164	69625164	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115452181		P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	41	851	0	ENST00000334134.2:c.629G>A	p.Arg210Gln	p.R210Q	ENST00000334134	NM_005247.2	210	cGg/cAg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600369	10600369	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	289	850	0	ENST00000171111.5:c.1486G>T	p.Glu496Ter	p.E496*	ENST00000171111	NM_203500.1	496	Gag/Tag																																																																															
POLD1	5424	MSKCC	GRCh37	19	50917023	50917023	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145473716		P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	47	692	0	ENST00000440232.2:c.2275G>A	p.Val759Ile	p.V759I	ENST00000440232	NM_002691.3	759	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519976		P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	274	936	0	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449727	8449727	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs772305581		P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	174	494	0	ENST00000356435.5:c.3986C>T	p.Pro1329Leu	p.P1329L	ENST00000356435		1329	cCg/cTg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72076745	72076745	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	98	560	0	ENST00000357731.5:c.752C>A	p.Pro251Gln	p.P251Q	ENST00000357731	NM_173808.2	251	cCg/cAg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12627284	12627284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	111	414	0	ENST00000251849.4:c.1432G>A	p.Glu478Lys	p.E478K	ENST00000251849	NM_002880.3	478	Gaa/Aaa																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612754	228612754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	284	698	0	ENST00000366696.1:c.273G>A	p.Met91Ile	p.M91I	ENST00000366696	NM_003493.2	91	atG/atA																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682371	52682371	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	80	300	0	ENST00000394830.3:c.802C>T	p.Gln268Ter	p.Q268*	ENST00000394830	NM_018313.4	268	Caa/Taa																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66519036	66519036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	49	431	0	ENST00000358598.2:c.317C>T	p.Thr106Met	p.T106M	ENST00000358598	NM_212471.2	106	aCg/aTg																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699514	117699514	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	33	361	0	ENST00000369458.3:c.127G>T	p.Ala43Ser	p.A43S	ENST00000369458	NM_024626.3	43	Gcc/Tcc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748370	162748370	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	123	342	0	ENST00000367921.3:c.2284G>T	p.Gly762Cys	p.G762C	ENST00000367921	NM_006182.2	762	Ggc/Tgc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175916375	175916375	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	98	331	0	ENST00000367669.3:c.2134G>T	p.Glu712Ter	p.E712*	ENST00000367669	NM_022457.5	712	Gag/Tag																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607728	46607728	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	152	771	0	ENST00000263734.3:c.1917G>C	p.Trp639Cys	p.W639C	ENST00000263734	NM_001430.4	639	tgG/tgC																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356293	66356293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	51	516	0	ENST00000273854.3:c.1204G>T	p.Ala402Ser	p.A402S	ENST00000273854	NM_004439.5	402	Gca/Tca																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361213	66361213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	76	349	0	ENST00000273854.3:c.959G>T	p.Gly320Val	p.G320V	ENST00000273854	NM_004439.5	320	gGc/gTc																																																																															
FYN	2534	MSKCC	GRCh37	6	112025243	112025244	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	178	590	1	ENST00000368678.4:c.505_506delinsAA	p.Pro169Lys	p.P169K	ENST00000368678		169	CCa/AAa																																																																															
CDK6	1021	MSKCC	GRCh37	7	92300822	92300822	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	68	436	1	ENST00000265734.4:c.565G>T	p.Glu189Ter	p.E189*	ENST00000265734	NM_001259.6	189	Gaa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945075	151945075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	31	430	0	ENST00000262189.6:c.2444C>T	p.Thr815Ile	p.T815I	ENST00000262189	NM_170606.2	815	aCt/aTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485295	8485295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	130	482	0	ENST00000356435.5:c.3085G>T	p.Val1029Leu	p.V1029L	ENST00000356435		1029	Gta/Tta																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499700	8499700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	148	532	0	ENST00000356435.5:c.2269G>A	p.Gly757Ser	p.G757S	ENST00000356435		757	Ggt/Agt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0042780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	37	50	0	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711891	89711891	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs876660507		P-0042780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	19	34	0	ENST00000371953.3:c.509G>T	p.Ser170Ile	p.S170I	ENST00000371953	NM_000314.4	170	aGt/aTt																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0042818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	118	449	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	255	554	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0042818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	373	746	1	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372070	55372070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	264	587	0	ENST00000297316.4:c.760G>A	p.Ala254Thr	p.A254T	ENST00000297316	NM_022454.3	254	Gcg/Acg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971023	21971023	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782797		P-0042818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	59	581	0	ENST00000304494.5:c.335G>A	p.Arg112His	p.R112H	ENST00000304494	NM_000077.4	112	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175377	112175378	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	81	282	0	ENST00000257430.4:c.4090dup	p.Ser1364LysfsTer11	p.S1364Kfs*11	ENST00000257430	NM_000038.5	1362	-/A																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	122	585	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	106	450	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	93	283	2	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103755	47103756	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	114	407	0	ENST00000409792.3:c.6190_6191del	p.Asp2064ProfsTer8	p.D2064Pfs*8	ENST00000409792	NM_014159.6	2064	GAc/c																																																																															
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	101	377	2	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	175	695	3	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874637	35874637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	54	282	1	ENST00000303115.3:c.799del	p.Arg267GlyfsTer28	p.R267Gfs*28	ENST00000303115	NM_002185.3	265	Aaa/aa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989482	212989482	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	54	285	0	ENST00000342788.4:c.229C>A	p.Leu77Met	p.L77M	ENST00000342788	NM_005235.2	77	Ctg/Atg																																																																															
ATRX	546	MSKCC	GRCh37	X	76890150	76890150	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	83	373	0	ENST00000373344.5:c.4744del	p.Thr1582GlnfsTer24	p.T1582Qfs*24	ENST00000373344	NM_000489.3	1582	Aca/ca																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136949	64136949	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749917386		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	109	528	0	ENST00000334205.4:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000334205	NM_003942.2	487	cGg/cAg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129338	152129338	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1361952517		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	105	522	1	ENST00000206249.3:c.296del	p.Pro99HisfsTer10	p.P99Hfs*10	ENST00000206249	NM_000125.3	97	ttC/tt																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	100	471	10	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs771001164		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	75	379	0	ENST00000307078.5:c.1214_1215del	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	33	140	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	360055	360055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	137	576	0	ENST00000262320.3:c.1034del	p.Pro345HisfsTer69	p.P345Hfs*69	ENST00000262320	NM_003502.3	345	cCa/ca																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226253377	226253377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	48	203	0	ENST00000366813.1:c.149G>A	p.Arg50His	p.R50H	ENST00000366813		50	cGt/cAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044511	47044511	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	95	617	0	ENST00000329236.7:c.1778del	p.Asn593IlefsTer33	p.N593Ifs*33	ENST00000329236	NM_001204466.1	592	Aaa/aa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs767319284		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	120	655	2	ENST00000337652.1:c.1561dup	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	498235	498235	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	53	235	2	ENST00000399788.2:c.23del	p.Gly8AlafsTer58	p.G8Afs*58	ENST00000399788	NM_001042603.1	8	gGc/gc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781321	3781321	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200112956		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	186	806	0	ENST00000262367.5:c.5044C>T	p.Arg1682Cys	p.R1682C	ENST00000262367	NM_004380.2	1682	Cgc/Tgc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	87	438	1	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
MED12	9968	MSKCC	GRCh37	X	70339722	70339722	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	102	552	2	ENST00000374080.3:c.395del	p.Lys132ArgfsTer15	p.K132Rfs*15	ENST00000374080		131	Aaa/aa																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2492097	2492097	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	132	611	2	ENST00000355716.4:c.500del	p.Pro167ArgfsTer23	p.P167Rfs*23	ENST00000355716	NM_003820.2	165	tgC/tg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240163	41240163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	28	77	0	ENST00000379561.5:c.187G>A	p.Ala63Thr	p.A63T	ENST00000379561	NM_002015.3	63	Gct/Act																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214398	36214398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs868041281		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	113	494	0	ENST00000222270.7:c.3057del	p.Gly1020AlafsTer4	p.G1020Afs*4	ENST00000222270	NM_014727.1	1018	Aaa/aa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	359972	359972	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	96	563	0	ENST00000262320.3:c.1116+1G>A		p.X372_splice	ENST00000262320	NM_003502.3	372																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81929495	81929495	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769180169		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	110	420	0	ENST00000359376.3:c.1156G>A	p.Val386Met	p.V386M	ENST00000359376	NM_002661.3	386	Gtg/Atg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925402	114925402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs768101780		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	148	605	2	ENST00000543371.1:c.1485del	p.Ser496ProfsTer5	p.S496Pfs*5	ENST00000543371	NM_001198531.1	494	Ccc/cc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347191	89347191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	106	565	0	ENST00000301030.4:c.5759C>T	p.Thr1920Met	p.T1920M	ENST00000301030	NM_001256183.1	1920	aCg/aTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918125	50918127	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs763850764		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	142	710	0	ENST00000440232.2:c.2446_2448del	p.Ser816del	p.S816del	ENST00000440232	NM_002691.3	814	ttCTCc/ttc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356254	66356254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	73	466	0	ENST00000273854.3:c.1243C>A	p.Leu415Ile	p.L415I	ENST00000273854	NM_004439.5	415	Ctt/Att																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187222	38187222	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	297	654	0	ENST00000317025.8:c.1255del	p.Thr419ProfsTer8	p.T419Pfs*8	ENST00000317025	NM_023034.1	419	Acc/cc																																																																															
HGF	3082	MSKCC	GRCh37	7	81374338	81374338	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202185530		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	78	284	0	ENST00000222390.5:c.724C>T	p.Arg242Trp	p.R242W	ENST00000222390	NM_000601.4	242	Cgg/Tgg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741646	145741646	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757320755		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	132	637	0	ENST00000428558.2:c.857C>T	p.Ser286Leu	p.S286L	ENST00000428558	NM_004260.3	286	tCg/tTg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563285	21563285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1207863433		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	146	710	3	ENST00000382592.4:c.634G>A	p.Val212Met	p.V212M	ENST00000382592	NM_014572.2	212	Gtg/Atg																																																																															
KIT	3815	MSKCC	GRCh37	4	55597498	55597498	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769701248		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	50	299	0	ENST00000288135.5:c.2146G>A	p.Asp716Asn	p.D716N	ENST00000288135	NM_000222.2	716	Gat/Aat																																																																															
JUN	3725	MSKCC	GRCh37	1	59248139	59248139	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	27	113	0	ENST00000371222.2:c.604del	p.Gln202SerfsTer24	p.Q202Sfs*24	ENST00000371222	NM_002228.3	202	Cag/ag																																																																															
CDC73	79577	MSKCC	GRCh37	1	193218901	193218901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	44	203	0	ENST00000367435.3:c.1459C>T	p.Pro487Ser	p.P487S	ENST00000367435	NM_024529.4	487	Cca/Tca																																																																															
PARP1	142	MSKCC	GRCh37	1	226579958	226579958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	96	471	0	ENST00000366794.5:c.344C>T	p.Ala115Val	p.A115V	ENST00000366794	NM_001618.3	115	gCa/gTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49415936	49415936	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	35	366	0	ENST00000301067.7:c.16413-2A>G		p.X5471_splice	ENST00000301067	NM_003482.3	5471																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56493620	56493621	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-	rs766102716		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	60	324	0	ENST00000267101.3:c.2944_2945del		p.X982_splice	ENST00000267101	NM_001982.3	982																																																																																
FOXO1	2308	MSKCC	GRCh37	13	41240345	41240345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	36	313	1	ENST00000379561.5:c.5C>T	p.Ala2Val	p.A2V	ENST00000379561	NM_002015.3	2	gCc/gTc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724871	43724872	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	78	339	0	ENST00000382044.4:c.3195dup	p.Asn1066GlufsTer20	p.N1066Efs*20	ENST00000382044	NM_001141980.1	1065	-/G																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43769865	43769865	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	79	367	0	ENST00000382044.4:c.881T>G	p.Leu294Arg	p.L294R	ENST00000382044	NM_001141980.1	294	cTg/cGg																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348954	11348954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	121	486	0	ENST00000332029.2:c.382G>A	p.Val128Met	p.V128M	ENST00000332029	NM_003745.1	128	Gtg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829466	72829466	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1337139331		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	120	505	0	ENST00000268489.5:c.7115T>C	p.Met2372Thr	p.M2372T	ENST00000268489	NM_006885.3	2372	aTg/aCg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350510	89350510	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	170	607	0	ENST00000301030.4:c.2440T>C	p.Phe814Leu	p.F814L	ENST00000301030	NM_001256183.1	814	Ttt/Ctt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533648	63533649	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	106	628	0	ENST00000307078.5:c.1505dup	p.Lys503GlnfsTer125	p.K503Qfs*125	ENST00000307078	NM_004655.3	502	ggc/ggGc																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30309511	30309511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	315	584	0	ENST00000307677.4:c.511G>A	p.Ala171Thr	p.A171T	ENST00000307677	NM_138578.1	171	Gcc/Acc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391023	89391024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	88	438	0	ENST00000336596.2:c.1095dup	p.Cys366MetfsTer9	p.C366Mfs*9	ENST00000336596	NM_005233.5	363	-/A																																																																															
TERT	7015	MSKCC	GRCh37	5	1272361	1272361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	143	758	0	ENST00000310581.5:c.2321G>A	p.Arg774Gln	p.R774Q	ENST00000310581	NM_198253.2	774	cGa/cAa																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790754	89790754	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	141	722	0	ENST00000336032.3:c.145del	p.Arg49GlyfsTer13	p.R49Gfs*13	ENST00000336032	NM_006813.2	47	gaC/ga																																																																															
ROS1	6098	MSKCC	GRCh37	6	117663641	117663641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	41	339	1	ENST00000368508.3:c.4591G>T	p.Ala1531Ser	p.A1531S	ENST00000368508	NM_002944.2	1531	Gct/Tct																																																																															
MET	4233	MSKCC	GRCh37	7	116339939	116339939	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	71	289	0	ENST00000397752.3:c.801A>C	p.Glu267Asp	p.E267D	ENST00000397752	NM_000245.2	267	gaA/gaC																																																																															
MED12	9968	MSKCC	GRCh37	X	70343060	70343060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	86	431	0	ENST00000374080.3:c.1601C>T	p.Ala534Val	p.A534V	ENST00000374080		534	gCg/gTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70344618	70344618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	88	441	0	ENST00000374080.3:c.1979C>T	p.Pro660Leu	p.P660L	ENST00000374080		660	cCa/cTa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2108827	2108834	+	frameshift_variant	Frame_Shift_Del	DEL	TATTCTCT	TATTCTCT	C			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	96	645	0	ENST00000219476.3:c.928_935delinsC	p.Tyr310ProfsTer51	p.Y310Pfs*51	ENST00000219476	NM_000548.3	310	TATTCTCTc/Cc																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551410	150551410	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs769198905		P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2340	250	970	0	ENST00000369026.2:c.597G>T	p.Met199Ile	p.M199I	ENST00000369026	NM_021960.4	199	atG/atT																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175942	176175942	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	40	162	0	ENST00000367669.3:c.173C>A	p.Ser58Ter	p.S58*	ENST00000367669	NM_022457.5	58	tCg/tAg																																																																															
TET1	80312	MSKCC	GRCh37	10	70450735	70450735	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs774165175		P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	131	558	0	ENST00000373644.4:c.5575C>G	p.Pro1859Ala	p.P1859A	ENST00000373644	NM_030625.2	1859	Cca/Gca																																																																															
WT1	7490	MSKCC	GRCh37	11	32456371	32456371	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	205	831	0	ENST00000332351.3:c.521C>G	p.Ala174Gly	p.A174G	ENST00000332351	NM_024426.4	174	gCc/gGc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138148	64138148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	197	820	0	ENST00000334205.4:c.2071C>T	p.Leu691Phe	p.L691F	ENST00000334205	NM_003942.2	691	Ctc/Ttc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445092	49445092	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs201778313		P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	163	747	0	ENST00000301067.7:c.2374G>C	p.Ala792Pro	p.A792P	ENST00000301067	NM_003482.3	792	Gct/Cct																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514403	103514403	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	42	234	0	ENST00000355739.4:c.904G>T	p.Glu302Ter	p.E302*	ENST00000355739	NM_000123.3	302	Gaa/Taa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678427	88678427	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	214	918	0	ENST00000360948.2:c.1109A>T	p.His370Leu	p.H370L	ENST00000360948	NM_001012338.2	370	cAc/cTc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99478227	99478227	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	91	431	0	ENST00000268035.6:c.3131G>C	p.Arg1044Thr	p.R1044T	ENST00000268035	NM_000875.3	1044	aGg/aCg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778858	3778858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	345	775	1	ENST00000262367.5:c.6190C>T	p.Pro2064Ser	p.P2064S	ENST00000262367	NM_004380.2	2064	Ccc/Tcc																																																																															
CBFB	865	MSKCC	GRCh37	16	67116212	67116212	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	154	625	0	ENST00000412916.2:c.495+1G>T		p.X165_splice	ENST00000412916		165																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72993287	72993287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	255	949	0	ENST00000268489.5:c.758G>A	p.Ser253Asn	p.S253N	ENST00000268489	NM_006885.3	253	aGc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	385	833	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41258490	41258490	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	380	494	0	ENST00000357654.3:c.195G>C	p.Lys65Asn	p.K65N	ENST00000357654	NM_007294.3	65	aaG/aaC																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78704506	78704506	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	202	433	0	ENST00000306801.3:c.654G>T	p.Glu218Asp	p.E218D	ENST00000306801	NM_020761.2	218	gaG/gaT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238758086		P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	434	779	2	ENST00000358026.2:c.2729C>T	p.Thr910Met	p.T910M	ENST00000358026	NM_001128849.1	910	aCg/aTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214173	36214173	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	637	784	0	ENST00000222270.7:c.2999G>T	p.Cys1000Phe	p.C1000F	ENST00000222270	NM_014727.1	1000	tGt/tTt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214678	36214678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	314	709	0	ENST00000222270.7:c.3104C>T	p.Ser1035Phe	p.S1035F	ENST00000222270	NM_014727.1	1035	tCt/tTt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212289026	212289026	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	106	422	0	ENST00000342788.4:c.2720G>A	p.Gly907Glu	p.G907E	ENST00000342788	NM_005235.2	907	gGa/gAa																																																																															
INHA	3623	MSKCC	GRCh37	2	220439904	220439904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	457	928	0	ENST00000243786.2:c.757C>A	p.Pro253Thr	p.P253T	ENST00000243786	NM_002191.3	253	Ccg/Acg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445035	89445035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	93	549	0	ENST00000336596.2:c.1355G>T	p.Ser452Ile	p.S452I	ENST00000336596	NM_005233.5	452	aGc/aTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89456522	89456522	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	86	305	0	ENST00000336596.2:c.1697+1G>T		p.X566_splice	ENST00000336596	NM_005233.5	566																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134968183	134968183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	755	483	1	ENST00000398015.3:c.2696C>T	p.Ser899Phe	p.S899F	ENST00000398015	NM_004441.4	899	tCc/tTc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664981	138664981	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	88	349	0	ENST00000330315.3:c.584T>A	p.Leu195Gln	p.L195Q	ENST00000330315	NM_023067.3	195	cTg/cAg																																																																															
TP63	8626	MSKCC	GRCh37	3	189582193	189582193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	125	462	0	ENST00000264731.3:c.752G>T	p.Arg251Leu	p.R251L	ENST00000264731	NM_003722.4	251	cGt/cTt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808870	1808870	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs560280646		P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	250	870	1	ENST00000260795.2:c.2302G>A	p.Glu768Lys	p.E768K	ENST00000260795		768	Gag/Aag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31485003	31485003	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	89	331	0	ENST00000344624.3:c.1981G>T	p.Asp661Tyr	p.D661Y	ENST00000344624		661	Gac/Tac																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680482	30680482	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	159	611	0	ENST00000376406.3:c.1237G>T	p.Ala413Ser	p.A413S	ENST00000376406	NM_014641.2	413	Gcg/Tcg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202200	138202200	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3734553		P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	151	549	0	ENST00000237289.4:c.2117G>A	p.Arg706Gln	p.R706Q	ENST00000237289	NM_001270507.1	706	cGa/cAa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026850	6026850	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	468	532	0	ENST00000265849.7:c.1546A>C	p.Ser516Arg	p.S516R	ENST00000265849	NM_000535.5	516	Agc/Cgc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148512086	148512086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	126	522	0	ENST00000320356.2:c.1592C>T	p.Pro531Leu	p.P531L	ENST00000320356	NM_004456.4	531	cCa/cTa																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80336316	80336316	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	219	342	1	ENST00000286548.4:c.1003G>T	p.Glu335Ter	p.E335*	ENST00000286548	NM_002072.3	335	Gag/Tag																																																																															
AR	367	MSKCC	GRCh37	X	66766111	66766111	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	382	387	0	ENST00000374690.3:c.1124del	p.Pro375ArgfsTer104	p.P375Rfs*104	ENST00000374690	NM_000044.3	375	Ccg/cg																																																																															
AR	367	MSKCC	GRCh37	X	66766228	66766228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	172	332	0	ENST00000374690.3:c.1240C>A	p.Leu414Met	p.L414M	ENST00000374690	NM_000044.3	414	Ctg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0043229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	171	676	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175746	112175746	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	48	348	0	ENST00000257430.4:c.4455del	p.Asp1486IlefsTer21	p.D1486Ifs*21	ENST00000257430	NM_000038.5	1485	gcT/gc																																																																															
APC	324	MSKCC	GRCh37	5	112174091	112174094	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0043229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	57	385	0	ENST00000257430.4:c.2802_2805del	p.Tyr935IlefsTer19	p.Y935Ifs*19	ENST00000257430	NM_000038.5	934	ACTTac/ac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259328	89259328	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	26	442	0	ENST00000336596.2:c.472G>T	p.Gly158Trp	p.G158W	ENST00000336596	NM_005233.5	158	Ggg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249460	153249460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	96	601	1	ENST00000281708.4:c.1318G>A	p.Asp440Asn	p.D440N	ENST00000281708	NM_033632.3	440	Gat/Aat																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964055	28964055	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	66	507	0	ENST00000282397.4:c.1847C>G	p.Ser616Cys	p.S616C	ENST00000282397	NM_002019.4	616	tCc/tGc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554003	63554003	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	110	534	0	ENST00000307078.5:c.736A>G	p.Thr246Ala	p.T246A	ENST00000307078	NM_004655.3	246	Acc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786202962		P-0043253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	148	649	2	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0043253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	61	398	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0043253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	39	214	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741849	17741849	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750173588		P-0043253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	36	117	1	ENST00000250003.3:c.520G>A	p.Ala174Thr	p.A174T	ENST00000250003	NM_002478.4	174	Gcc/Acc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350983	89350983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	110	776	0	ENST00000301030.4:c.1967G>A	p.Ser656Asn	p.S656N	ENST00000301030	NM_001256183.1	656	aGt/aAt																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73775146	73775146	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	100	580	0	ENST00000254810.4:c.110A>T	p.Lys37Met	p.K37M	ENST00000254810	NM_005324.3	37	aAg/aTg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710882	117710886	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGT	CTTGT	-			P-0043253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	68	424	0	ENST00000368508.3:c.1386_1390del	p.Lys465AsnfsTer6	p.K465Nfs*6	ENST00000368508	NM_002944.2	462	ccACAAGcc/cccc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739872	41739872	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	63	412	0	ENST00000242208.4:c.101A>G	p.Asp34Gly	p.D34G	ENST00000242208	NM_002192.2	34	gAc/gGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859509	151859509	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	90	521	1	ENST00000262189.6:c.11153T>A	p.Ile3718Lys	p.I3718K	ENST00000262189	NM_170606.2	3718	aTa/aAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0043367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	287	651	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0043367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	142	264	0				ENST00000310581	NM_198253.2																																																																																	
EPHB1	2047	MSKCC	GRCh37	3	134670527	134670527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	161	688	0	ENST00000398015.3:c.438C>A	p.Phe146Leu	p.F146L	ENST00000398015	NM_004441.4	146	ttC/ttA																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156742	20156742	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0043422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	44	152	0	ENST00000379607.5:c.17-2A>G		p.X6_splice	ENST00000379607	NM_001412.3	6																																																																																
SOX9	6662	MSKCC	GRCh37	17	70120146	70120146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	53	270	0	ENST00000245479.2:c.1148C>T	p.Thr383Ile	p.T383I	ENST00000245479	NM_000346.3	383	aCc/aTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0043532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	23	260	3	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0043532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	187	582	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0043532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	17	160	1	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175749	112175756	+	frameshift_variant	Frame_Shift_Del	DEL	TACTTTAT	TACTTTAT	-			P-0043532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	13	190	0	ENST00000257430.4:c.4461_4468del	p.Leu1488PhefsTer23	p.L1488Ffs*23	ENST00000257430	NM_000038.5	1486	gaTACTTTATta/gata																																																																															
BBC3	27113	MSKCC	GRCh37	19	47735855	47735855	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	157	499	1	ENST00000449228.1:c.5A>T	p.Lys2Ile	p.K2I	ENST00000449228	NM_001127240.2	2	aAa/aTa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38172194	38172195	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0043532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	70	233	0	ENST00000317025.8:c.2212_2213del	p.Ser738GlnfsTer8	p.S738Qfs*8	ENST00000317025	NM_023034.1	738	AGc/c																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38172997	38173013	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCACATCAGAAACGT	CTGCACATCAGAAACGT	-			P-0043532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	83	321	0	ENST00000317025.8:c.2036_2052del	p.Asp679ValfsTer15	p.D679Vfs*15	ENST00000317025	NM_023034.1	679	gACGTTTCTGATGTGCAG/g																																																																															
TET2	54790	MSKCC	GRCh37	4	106155385	106155385	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1187881284		P-0043556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	61	478	0	ENST00000380013.4:c.286C>T	p.Arg96Cys	p.R96C	ENST00000380013	NM_001127208.2	96	Cgc/Tgc																																																																															
EP300	2033	MSKCC	GRCh37	22	41574829	41574829	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs768061933		P-0043583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	373	449	0	ENST00000263253.7:c.7114A>G	p.Met2372Val	p.M2372V	ENST00000263253	NM_001429.3	2372	Atg/Gtg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69009261	69009261	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	185	96	0	ENST00000288368.4:c.2378A>G	p.Asp793Gly	p.D793G	ENST00000288368	NM_024870.2	793	gAc/gGc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216554	7216567	+	frameshift_variant	Frame_Shift_Del	DEL	GGTTAGCATGTTCC	GGTTAGCATGTTCC	T			P-0043583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	273	355	0	ENST00000380728.2:c.768_781delinsA	p.Met256IlefsTer85	p.M256Ifs*85	ENST00000380728		256	atGGAACATGCTAACCag/atAag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	248	567	0	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0043591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	595	633	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61753649	61753649	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	85	321	0	ENST00000401558.2:c.134T>A	p.Met45Lys	p.M45K	ENST00000401558	NM_003400.3	45	aTg/aAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0043591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	497	407	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168490	56168491	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	270	282	0	ENST00000399503.3:c.1447dup	p.Arg483LysfsTer10	p.R483Kfs*10	ENST00000399503	NM_005921.1	482	-/A																																																																															
BRAF	673	MSKCC	GRCh37	7	140453149	140453149	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913361		P-0043628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	18	388	0	ENST00000288602.6:c.1786G>C	p.Gly596Arg	p.G596R	ENST00000288602	NM_004333.4	596	Ggt/Cgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133226321	133226321	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750902578		P-0043628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	53	1005	1	ENST00000320574.5:c.3737C>T	p.Thr1246Met	p.T1246M	ENST00000320574	NM_006231.2	1246	aCg/aTg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793364	242793364	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1298132910		P-0043628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	56	1104	1	ENST00000334409.5:c.713C>A	p.Pro238His	p.P238H	ENST00000334409	NM_005018.2	238	cCc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70342357	70342357	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0043628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	34	296	0	ENST00000374080.3:c.1249-1G>T		p.X417_splice	ENST00000374080		417																																																																																
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0043747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	423	862	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53231106	53231106	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			385	165	275	0	ENST00000375401.3:c.1796G>T	p.Arg599Leu	p.R599L	ENST00000375401	NM_004187.3	599	cGt/cTt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41215376	41215376	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			356	164	330	0	ENST00000357654.3:c.5167A>T	p.Ile1723Phe	p.I1723F	ENST00000357654	NM_007294.3	1723	Att/Ttt																																																																															
WT1	7490	MSKCC	GRCh37	11	32456320	32456320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			923	183	745	1	ENST00000332351.3:c.572G>T	p.Gly191Val	p.G191V	ENST00000332351	NM_024426.4	191	gGc/gTc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661605	227661605	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1205996251		P-0043747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			445	313	756	0	ENST00000305123.5:c.1850C>T	p.Pro617Leu	p.P617L	ENST00000305123	NM_005544.2	617	cCa/cTa																																																																															
ATR	545	MSKCC	GRCh37	3	142204000	142204000	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	79	297	0	ENST00000350721.4:c.6203T>C	p.Ile2068Thr	p.I2068T	ENST00000350721	NM_001184.3	2068	aTa/aCa																																																																															
ATR	545	MSKCC	GRCh37	3	142274743	142274743	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0043747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			156	241	242	0	ENST00000350721.4:c.2317A>T	p.Lys773Ter	p.K773*	ENST00000350721	NM_001184.3	773	Aaa/Taa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31322873	31322915	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCTTCCCTACCTGAACTCTTCCTCCTACACATCACAGCAGCG	CCCTTCCCTACCTGAACTCTTCCTCCTACACATCACAGCAGCG	-			P-0043747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	151	490	0	ENST00000412585.2:c.981_1012+11del		p.X327_splice	ENST00000412585	NM_005514.6	327																																																																																
SMO	6608	MSKCC	GRCh37	7	128850814	128850814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			618	74	531	0	ENST00000249373.3:c.1661G>A	p.Gly554Glu	p.G554E	ENST00000249373	NM_005631.4	554	gGg/gAg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5029907	5029907	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0043747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			125	127	285	0	ENST00000381652.3:c.350+1G>A		p.X117_splice	ENST00000381652	NM_004972.3	117																																																																																
CRLF2	64109	MSKCC	GRCh37	X	1331479	1331479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			600	149	540	0	ENST00000381566.1:c.49G>T	p.Gly17Cys	p.G17C	ENST00000381566		17	Ggc/Tgc																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20148681	20148681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			173	88	161	0	ENST00000379607.5:c.382G>A	p.Glu128Lys	p.E128K	ENST00000379607	NM_001412.3	128	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0043823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	185	503	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290070	15290070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	375	618	0	ENST00000263388.2:c.3484G>A	p.Asp1162Asn	p.D1162N	ENST00000263388	NM_000435.2	1162	Gat/Aat																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932488	39932488	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	91	649	0	ENST00000378444.4:c.2111A>T	p.Tyr704Phe	p.Y704F	ENST00000378444	NM_001123385.1	704	tAt/tTt																																																																															
AXL	558	MSKCC	GRCh37	19	41736935	41736935	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776682499		P-0043829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	248	591	2	ENST00000301178.4:c.650G>A	p.Arg217His	p.R217H	ENST00000301178	NM_021913.4	217	cGc/cAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412156	63412156	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	262	768	2	ENST00000330258.3:c.1011G>T	p.Met337Ile	p.M337I	ENST00000330258	NM_152424.3	337	atG/atT																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24159103	24159103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	167	424	0	ENST00000263121.7:c.775G>C	p.Asp259His	p.D259H	ENST00000263121	NM_003073.3	259	Gac/Cac																																																																															
MGA	23269	MSKCC	GRCh37	15	42041647	42041647	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	176	449	1	ENST00000219905.7:c.5842C>T	p.Gln1948Ter	p.Q1948*	ENST00000219905	NM_001164273.1	1948	Cag/Tag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472583	88472583	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	68	474	0	ENST00000360948.2:c.1972C>A	p.His658Asn	p.H658N	ENST00000360948	NM_001012338.2	658	Cac/Aac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600528	10600528	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0043829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	195	419	0	ENST00000171111.5:c.1327T>A	p.Tyr443Asn	p.Y443N	ENST00000171111	NM_203500.1	443	Tat/Aat																																																																															
DAXX	1616	MSKCC	GRCh37	6	33286776	33286776	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0043829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	182	480	0	ENST00000374542.5:c.2161A>C	p.Lys721Gln	p.K721Q	ENST00000374542	NM_001141970.1	721	Aag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0044143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	314	806	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175153	112175153	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	37	208	1	ENST00000257430.4:c.3862G>T	p.Gly1288Ter	p.G1288*	ENST00000257430	NM_000038.5	1288	Gga/Tga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303270	15303270	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	297	1008	0	ENST00000263388.2:c.258del	p.Cys87ValfsTer149	p.C87Vfs*149	ENST00000263388	NM_000435.2	86	ccC/cc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0044144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	84	423	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138773	64138773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs568464055		P-0044144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	225	825	1	ENST00000334205.4:c.2140C>T	p.Arg714Trp	p.R714W	ENST00000334205	NM_003942.2	714	Cgg/Tgg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120346	70120347	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	576	1272	0	ENST00000245479.2:c.1350dup	p.Tyr451LeufsTer127	p.Y451Lfs*127	ENST00000245479	NM_000346.3	450	tcc/tCcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0044317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	158	417	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141426	11141426	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11537676		P-0044317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	313	694	0	ENST00000344626.4:c.3403C>T	p.Arg1135Trp	p.R1135W	ENST00000344626	NM_003072.3	1135	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs267605077		P-0044317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	525	808	0	ENST00000269305.4:c.400T>C	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	Ttt/Ctt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121541	2121541	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1334081822		P-0044317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	418	716	0	ENST00000219476.3:c.1870G>A	p.Asp624Asn	p.D624N	ENST00000219476	NM_000548.3	624	Gac/Aac																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133483	55133483	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	284	351	0	ENST00000257290.5:c.787G>T	p.Glu263Ter	p.E263*	ENST00000257290	NM_006206.4	263	Gaa/Taa																																																																															
RB1	5925	MSKCC	GRCh37	13	49039399	49039399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	81	483	0	ENST00000267163.4:c.2384C>T	p.Ser795Leu	p.S795L	ENST00000267163	NM_000321.2	795	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	231	387	1	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	587	578	1	ENST00000269305.4:c.472del	p.Arg158AlafsTer12	p.R158Afs*12	ENST00000269305	NM_001126112.2	158	Cgc/gc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350431	89350431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	198	642	0	ENST00000301030.4:c.2519G>T	p.Arg840Leu	p.R840L	ENST00000301030	NM_001256183.1	840	cGg/cTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76845358	76845358	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	112	113	0	ENST00000373344.5:c.6163G>T	p.Glu2055Ter	p.E2055*	ENST00000373344	NM_000489.3	2055	Gaa/Taa																																																																															
RB1	5925	MSKCC	GRCh37	13	49038250	49039272	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CATGAGTCATAGAACATTAGATATTCTTTGAAGTTATTTTTATTACTTTATAGGAAAAGCCAGTATAAATGCAGCCTTGCAAATCAATAATACAAATGTTCAGTATAAACACATTTTGTGTTTCCGGTTTACCTTCCCTTTAGAGAAATAGTAGTAGTAAAATATACTTGGTATGACACATTTCATATTGTTCTGTGGAAAGTGAGTTGAGGGGTATTTTTCCCATTTATTATTGGAGTTTTCAAAAGTAATACAAACCAAGTCATTTTTGTTTGTATGTTTGAAGTTATTTTCTAAATTCAATCATTTTAATTGTATATATCAGAGGCATCTGATATAACCTCTGTGTTTTTCCCTAAAATTTGAGTGAAATCTAACTATCACTAAAATATAGTGCTTTTACTAAATGTCTACTTCTTGCAATTGCGTAATGTATACTGAAACCCTTATAGATTGGGGGGGATACCGGGAGGTACAGGCCAGAGAATGTAGTCCAAATATTGGTGGATAATATTATTGGCTTTCGCTCAGCTCTGGCCCTTTGATTCCCATCATGCTTTCCATTCTACCAGTCTATCTACTCCTCTCTTCCCAGTCTATATACTCTTCTCTTCTTGGATGGCCAGCTCTTCCATCTGCTGCTGCCTGGCTATTTCTCTCAATCATTCTGTGACATTTCACTTCTAGAAGAGCAGCTATAATCCAAGCCTAAGAAGTAATTTTATTTATTTATTATTTTTTCCTTTATAATATGTGCTTCTTACCAGTCAAAAAGTATTATAAACTATTAGAAAAGAAAATCTAAAGGTAGAAATTTTAAAATTCATTTAACAAGTAAATTTTACTTTTTTTTTTTTTTTTTTTTTTTTACTGTTCTTCCTCAGACATTCAAACGTGTTTTGATCAAAGAAGAGGAGTATGATTCTATTATAGTATTCTATAACTCGGTCTTCATGCAGAGACTGAAAACAAATATTTTGCAGTATGCTTCCACCAGGGTAGGTCAAAAGTATCCTTTGATTG	CATGAGTCATAGAACATTAGATATTCTTTGAAGTTATTTTTATTACTTTATAGGAAAAGCCAGTATAAATGCAGCCTTGCAAATCAATAATACAAATGTTCAGTATAAACACATTTTGTGTTTCCGGTTTACCTTCCCTTTAGAGAAATAGTAGTAGTAAAATATACTTGGTATGACACATTTCATATTGTTCTGTGGAAAGTGAGTTGAGGGGTATTTTTCCCATTTATTATTGGAGTTTTCAAAAGTAATACAAACCAAGTCATTTTTGTTTGTATGTTTGAAGTTATTTTCTAAATTCAATCATTTTAATTGTATATATCAGAGGCATCTGATATAACCTCTGTGTTTTTCCCTAAAATTTGAGTGAAATCTAACTATCACTAAAATATAGTGCTTTTACTAAATGTCTACTTCTTGCAATTGCGTAATGTATACTGAAACCCTTATAGATTGGGGGGGATACCGGGAGGTACAGGCCAGAGAATGTAGTCCAAATATTGGTGGATAATATTATTGGCTTTCGCTCAGCTCTGGCCCTTTGATTCCCATCATGCTTTCCATTCTACCAGTCTATCTACTCCTCTCTTCCCAGTCTATATACTCTTCTCTTCTTGGATGGCCAGCTCTTCCATCTGCTGCTGCCTGGCTATTTCTCTCAATCATTCTGTGACATTTCACTTCTAGAAGAGCAGCTATAATCCAAGCCTAAGAAGTAATTTTATTTATTTATTATTTTTTCCTTTATAATATGTGCTTCTTACCAGTCAAAAAGTATTATAAACTATTAGAAAAGAAAATCTAAAGGTAGAAATTTTAAAATTCATTTAACAAGTAAATTTTACTTTTTTTTTTTTTTTTTTTTTTTTACTGTTCTTCCTCAGACATTCAAACGTGTTTTGATCAAAGAAGAGGAGTATGATTCTATTATAGTATTCTATAACTCGGTCTTCATGCAGAGACTGAAAACAAATATTTTGCAGTATGCTTCCACCAGGGTAGGTCAAAAGTATCCTTTGATTG	-			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	59	4	0	ENST00000267163.4:c.2211+279_2325+25del		p.X737_splice	ENST00000267163	NM_000321.2	737																																																																																
RB1	5925	MSKCC	GRCh37	13	49039435	49039435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	87	347	0	ENST00000267163.4:c.2420C>T	p.Ser807Leu	p.S807L	ENST00000267163	NM_000321.2	807	tCa/tTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207086	1207102	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTTACGGCAAGGTGA	CTCTTACGGCAAGGTGA	-			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	483	563	0	ENST00000326873.7:c.174_190del	p.Ser59GlyfsTer98	p.S59Gfs*98	ENST00000326873	NM_000455.4	58	ggCTCTTACGGCAAGGTGAag/ggag																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279582	18279582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	181	479	0	ENST00000222254.8:c.1855G>A	p.Glu619Lys	p.E619K	ENST00000222254	NM_005027.3	619	Gaa/Aaa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681650	30681650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	165	347	0	ENST00000376406.3:c.447G>T	p.Glu149Asp	p.E149D	ENST00000376406	NM_014641.2	149	gaG/gaT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170307	32170307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	249	551	0	ENST00000375023.3:c.3301C>A	p.Leu1101Met	p.L1101M	ENST00000375023	NM_004557.3	1101	Ctg/Atg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971289	13971289	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	105	362	0	ENST00000405192.2:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000405192	NM_001163147.1	214	Cag/Tag																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090805	5090807	+	frameshift_variant	Frame_Shift_Del	DEL	GAG	GAG	AA			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	47	256	0	ENST00000381652.3:c.2953_2955delinsAA	p.Glu985LysfsTer13	p.E985Kfs*13	ENST00000381652	NM_004972.3	985	GAG/AA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0044568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	106	549	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
ATM	472	MSKCC	GRCh37	11	108164079	108164079	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	30	147	0	ENST00000278616.4:c.4651G>C	p.Asp1551His	p.D1551H	ENST00000278616	NM_000051.3	1551	Gat/Cat																																																																															
EZH1	2145	MSKCC	GRCh37	17	40856618	40856618	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0044568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	43	322	0	ENST00000428826.2:c.2017+2T>C		p.X673_splice	ENST00000428826		673																																																																																
DOT1L	84444	MSKCC	GRCh37	19	2222082	2222082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	117	625	1	ENST00000398665.3:c.2914G>A	p.Gly972Arg	p.G972R	ENST00000398665	NM_032482.2	972	Ggg/Agg																																																																															
APC	324	MSKCC	GRCh37	5	112175075	112175076	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0044568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	17	132	0	ENST00000257430.4:c.3785dup	p.Tyr1262Ter	p.Y1262*	ENST00000257430	NM_000038.5	1262	tat/tAat																																																																															
CDK6	1021	MSKCC	GRCh37	7	92300746	92300746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	36	228	0	ENST00000265734.4:c.641G>A	p.Arg214His	p.R214H	ENST00000265734	NM_001259.6	214	cGt/cAt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458087	120458087	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	287	496	0	ENST00000256646.2:c.7258G>T	p.Glu2420Ter	p.E2420*	ENST00000256646	NM_024408.3	2420	Gag/Tag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0044793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	109	494	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578464	7578476	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGCCGGGCGG	GGGTGCCGGGCGG	-	rs876659215		P-0044793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	230	801	0	ENST00000269305.4:c.454_466del	p.Pro152AlafsTer14	p.P152Afs*14	ENST00000269305	NM_001126112.2	152	CCGCCCGGCACCCgc/gc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0044824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	168	356	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577520	7577520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	269	694	0	ENST00000269305.4:c.761T>A	p.Ile254Asn	p.I254N	ENST00000269305	NM_001126112.2	254	aTc/aAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190645	11190645	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745409542		P-0044824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	325	695	1	ENST00000361445.4:c.5554G>A	p.Glu1852Lys	p.E1852K	ENST00000361445	NM_004958.3	1852	Gag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11118674	11118674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	306	751	0	ENST00000344626.4:c.2098G>A	p.Glu700Lys	p.E700K	ENST00000344626	NM_003072.3	700	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097722	8097722	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	127	572	0	ENST00000346208.3:c.104A>T	p.Tyr35Phe	p.Y35F	ENST00000346208		35	tAc/tTc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435424	18435424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	34	275	0	ENST00000266497.5:c.409G>T	p.Asp137Tyr	p.D137Y	ENST00000266497		137	Gat/Tat																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14014044	14014044	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs774510191		P-0044824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	109	598	0	ENST00000311895.7:c.22C>G	p.Arg8Gly	p.R8G	ENST00000311895	NM_005236.2	8	Cga/Gga																																																																															
TEK	7010	MSKCC	GRCh37	9	27206583	27206583	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	29	346	0	ENST00000380036.4:c.2368G>T	p.Glu790Ter	p.E790*	ENST00000380036	NM_000459.3	790	Gaa/Taa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87563420	87563420	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183344464		P-0044824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	91	574	0	ENST00000277120.3:c.1808G>A	p.Arg603His	p.R603H	ENST00000277120		603	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578252	7578270	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTTCCACTCGGATAAGA	TCCTTCCACTCGGATAAGA	-			P-0044843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	357	829	0	ENST00000269305.4:c.579_597del	p.His193GlnfsTer48	p.H193Qfs*48	ENST00000269305	NM_001126112.2	193	caTCTTATCCGAGTGGAAGGA/ca																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942091	17942091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745535201		P-0044843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	142	960	1	ENST00000458235.1:c.2924C>T	p.Pro975Leu	p.P975L	ENST00000458235	NM_000215.3	975	cCg/cTg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0044901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	86	503	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936103	178936103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	94	674	0	ENST00000263967.3:c.1645G>C	p.Asp549His	p.D549H	ENST00000263967	NM_006218.2	549	Gat/Cat																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946375	2946375	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	143	924	0	ENST00000396946.4:c.3362A>G	p.Glu1121Gly	p.E1121G	ENST00000396946	NM_032415.4	1121	gAa/gGa																																																																															
MED12	9968	MSKCC	GRCh37	X	70348991	70348991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	118	726	0	ENST00000374080.3:c.3503G>A	p.Gly1168Glu	p.G1168E	ENST00000374080		1168	gGg/gAg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44966764	44966778	+	frameshift_variant	Frame_Shift_Del	DEL	TACTGTAGCATTTGT	TACTGTAGCATTTGT	C			P-0044901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	32	550	0	ENST00000377967.4:c.3988_4002delinsC	p.Tyr1330ArgfsTer6	p.Y1330Rfs*6	ENST00000377967	NM_021140.2	1330	TACTGTAGCATTTGT/C																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	protein_altering_variant	In_Frame_Ins	INS	G	G	AAAAGATTCA			P-0044901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	175	453	0	ENST00000263967.3:c.1357delinsAAAAGATTCA	p.Glu453delinsLysArgPheLys	p.E453delinsKRFK	ENST00000263967	NM_006218.2	453	Gaa/AAAAGATTCAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	214	712	1	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934578		P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	174	637	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346338	73346338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	101	264	0	ENST00000377767.4:c.1462G>A	p.Asp488Asn	p.D488N	ENST00000377767	NM_014953.3	488	Gat/Aat																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665015	138665015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	54	152	0	ENST00000330315.3:c.550G>A	p.Asp184Asn	p.D184N	ENST00000330315	NM_023067.3	184	Gac/Aac																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815776	32815776	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1172	118	686	0	ENST00000354258.4:c.1840C>G	p.Leu614Val	p.L614V	ENST00000354258	NM_000593.5	614	Ctg/Gtg																																																																															
ATRX	546	MSKCC	GRCh37	X	76813029	76813029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	37	224	0	ENST00000373344.5:c.6592C>T	p.His2198Tyr	p.H2198Y	ENST00000373344	NM_000489.3	2198	Cat/Tat																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115272884	115272884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	58	463	0	ENST00000438362.2:c.1489G>A	p.Glu497Lys	p.E497K	ENST00000438362	NM_001242891.1	497	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100450	8100450	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1547	191	775	0	ENST00000346208.3:c.424T>C	p.Ser142Pro	p.S142P	ENST00000346208		142	Tcg/Ccg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742857	17742857	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	200	753	0	ENST00000250003.3:c.765C>G	p.Ile255Met	p.I255M	ENST00000250003	NM_002478.4	255	atC/atG																																																																															
ATM	472	MSKCC	GRCh37	11	108119829	108119829	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	37	175	0	ENST00000278616.4:c.1235G>C	p.Trp412Ser	p.W412S	ENST00000278616	NM_000051.3	412	tGg/tCg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118362546	118362546	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	178	397	0	ENST00000534358.1:c.4907G>T	p.Arg1636Leu	p.R1636L	ENST00000534358	NM_005933.3	1636	cGa/cTa																																																																															
FLT1	2321	MSKCC	GRCh37	13	29068953	29068953	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	41	267	0	ENST00000282397.4:c.28C>A	p.Leu10Met	p.L10M	ENST00000282397	NM_002019.4	10	Ctg/Atg																																																																															
CDH1	999	MSKCC	GRCh37	16	68867272	68867272	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	137	490	0	ENST00000261769.5:c.2519C>G	p.Ser840Cys	p.S840C	ENST00000261769	NM_004360.3	840	tCc/tGc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40858148	40858148	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	820	678	0	ENST00000428826.2:c.1716T>A	p.Cys572Ter	p.C572*	ENST00000428826		572	tgT/tgA																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799528	72799528	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	222	552	0	ENST00000325599.8:c.1641G>C	p.Lys547Asn	p.K547N	ENST00000325599	NM_018130.2	547	aaG/aaC																																																																															
RASA1	5921	MSKCC	GRCh37	5	86658371	86658371	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	36	104	0	ENST00000274376.6:c.1336C>T	p.Gln446Ter	p.Q446*	ENST00000274376	NM_002890.2	446	Caa/Taa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86670004	86670004	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	59	197	0	ENST00000274376.6:c.1801G>T	p.Glu601Ter	p.E601*	ENST00000274376	NM_002890.2	601	Gaa/Taa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467771	50467771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	380	524	0	ENST00000331340.3:c.1006G>A	p.Gly336Ser	p.G336S	ENST00000331340	NM_006060.4	336	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	27	325	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0045139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	37	707	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136841	2136841	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	40	735	1	ENST00000219476.3:c.4958C>A	p.Ser1653Tyr	p.S1653Y	ENST00000219476	NM_000548.3	1653	tCc/tAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0045190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	104	215	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967350	134967350	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs61736108		P-0045190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	129	413	0	ENST00000398015.3:c.2689G>A	p.Val897Met	p.V897M	ENST00000398015	NM_004441.4	897	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175219	112175219	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0045190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	70	192	1	ENST00000257430.4:c.3928A>T	p.Lys1310Ter	p.K1310*	ENST00000257430	NM_000038.5	1310	Aag/Tag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351178	89351178	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	85	667	0	ENST00000301030.4:c.1772C>G	p.Pro591Arg	p.P591R	ENST00000301030	NM_001256183.1	591	cCa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577547	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-			P-0045190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	201	580	0	ENST00000269305.4:c.734_736del	p.Gly245_Met246delinsVal	p.G245_M246delinsV	ENST00000269305	NM_001126112.2	245	gGCAtg/gtg																																																																															
APC	324	MSKCC	GRCh37	5	112175225	112175225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	70	198	0	ENST00000257430.4:c.3934G>A	p.Gly1312Arg	p.G1312R	ENST00000257430	NM_000038.5	1312	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0045221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	305	818	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0045221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	149	494	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604785	48604785	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	133	411	0	ENST00000342988.3:c.1607T>G	p.Leu536Arg	p.L536R	ENST00000342988	NM_005359.5	536	cTa/cGa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3808853	3808853	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0045221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	81	439	0	ENST00000262367.5:c.3369+2T>G		p.X1123_splice	ENST00000262367	NM_004380.2	1123																																																																																
AXL	558	MSKCC	GRCh37	19	41765717	41765717	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1466592724		P-0045221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	204	663	1	ENST00000301178.4:c.2593C>T	p.Arg865Cys	p.R865C	ENST00000301178	NM_021913.4	865	Cgc/Tgc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602328	10602328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	57	834	0	ENST00000171111.5:c.1250G>T	p.Gly417Val	p.G417V	ENST00000171111	NM_203500.1	417	gGg/gTg																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38631974	38631974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	32	530	0	ENST00000299084.4:c.460G>A	p.Asp154Asn	p.D154N	ENST00000299084	NM_152594.2	154	Gat/Aat																																																																															
STK11	6794	MSKCC	GRCh37	19	1220578	1220578	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0045256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	30	764	0	ENST00000326873.7:c.598-2A>C		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																																
DOT1L	84444	MSKCC	GRCh37	19	2202722	2202722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	34	590	1	ENST00000398665.3:c.731C>T	p.Ala244Val	p.A244V	ENST00000398665	NM_032482.2	244	gCc/gTc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61706062	61706062	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	52	451	0	ENST00000401558.2:c.3109G>C	p.Glu1037Gln	p.E1037Q	ENST00000401558	NM_003400.3	1037	Gag/Cag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678369	88678370	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	A			P-0045256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	55	726	0	ENST00000360948.2:c.1166_1167delinsT	p.Gln389LeufsTer25	p.Q389Lfs*25	ENST00000360948	NM_001012338.2	389	cAG/cT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0045318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	469	752	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112175492	112175493	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	214	393	0	ENST00000257430.4:c.4203dup	p.Ala1402CysfsTer7	p.A1402Cfs*7	ENST00000257430	NM_000038.5	1401	att/aTtt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18466993	18466993	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs370262872		P-0045318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	113	379	0	ENST00000266497.5:c.1132C>T	p.Arg378Ter	p.R378*	ENST00000266497		378	Cga/Tga																																																																															
TOP1	7150	MSKCC	GRCh37	20	39741455	39741455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	163	472	0	ENST00000361337.2:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000361337	NM_003286.2	448	Cgg/Tgg																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793202	33793202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	40	84	0	ENST00000498907.2:c.119C>T	p.Ala40Val	p.A40V	ENST00000498907	NM_004364.3	40	gCg/gTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117868	70117868	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1407667250		P-0045318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	375	500	0	ENST00000245479.2:c.336C>A	p.Phe112Leu	p.F112L	ENST00000245479	NM_000346.3	112	ttC/ttA																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281592	49281593	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1240	128	750	0	ENST00000282018.3:c.639_640insG	p.Phe214ValfsTer72	p.F214Vfs*72	ENST00000282018	NM_020377.2	213	-/G																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	233	795	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	68	218	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	159	538	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020768	37020769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs767894241		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	138	474	0	ENST00000358127.4:c.76dup	p.Val26GlyfsTer49	p.V26Gfs*49	ENST00000358127	NM_001280556.1	26	gtt/gGtt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	246	859	11	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852248	63852248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145564601		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	192	554	0	ENST00000279873.7:c.3026C>T	p.Ala1009Val	p.A1009V	ENST00000279873	NM_032199.2	1009	gCg/gTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	312	741	3	ENST00000407977.2:c.349del	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	360	933	4	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225342967	225342967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	51	292	1	ENST00000264414.4:c.2125C>T	p.Arg709Trp	p.R709W	ENST00000264414	NM_003590.4	709	Cgg/Tgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	29	301	0	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100727	8100728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs771019738		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	203	796	0	ENST00000346208.3:c.708dup	p.Ser237GlnfsTer66	p.S237Qfs*66	ENST00000346208		234	ttc/ttCc																																																																															
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	85	298	1	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863319	57863319	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	260	730	2	ENST00000228682.2:c.1418del	p.Gly473AlafsTer40	p.G473Afs*40	ENST00000228682	NM_005269.2	472	Ggg/gg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	248	730	2	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443617	49443617	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs727503987		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	98	739	1	ENST00000301067.7:c.3754C>T	p.Arg1252Ter	p.R1252*	ENST00000301067	NM_003482.3	1252	Cga/Tga																																																																															
CUL3	8452	MSKCC	GRCh37	2	225378265	225378266	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	78	197	0	ENST00000264414.4:c.629dup	p.Leu210PhefsTer20	p.L210Ffs*20	ENST00000264414	NM_003590.4	210	ttg/ttTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376248	15376248	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	141	561	0	ENST00000263377.2:c.766del	p.Gln256SerfsTer27	p.Q256Sfs*27	ENST00000263377	NM_058243.2	256	Cag/ag																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133898	41133898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	42	422	0	ENST00000379561.5:c.1730del	p.Gly577AlafsTer5	p.G577Afs*5	ENST00000379561	NM_002015.3	577	gGc/gc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175759	176175760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1373807885		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	256	732	1	ENST00000367669.3:c.355dup	p.Leu119ProfsTer23	p.L119Pfs*23	ENST00000367669	NM_022457.5	119	ctc/cCtc																																																																															
SDHA	6389	MSKCC	GRCh37	5	226016	226016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	35	93	0	ENST00000264932.6:c.475C>T	p.Pro159Ser	p.P159S	ENST00000264932	NM_004168.2	159	Ccg/Tcg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515167	31515169	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-	rs760849334		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	193	575	0	ENST00000344624.3:c.1216_1218del	p.Glu406del	p.E406del	ENST00000344624		406	GAA/-																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981892	70981892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	216	886	0	ENST00000276594.2:c.204del	p.Phe69SerfsTer10	p.F69Sfs*10	ENST00000276594	NM_024504.3	68	ccC/cc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56494872	56494872	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112651994		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	195	521	1	ENST00000267101.3:c.3229C>T	p.Arg1077Trp	p.R1077W	ENST00000267101	NM_001982.3	1077	Cgg/Tgg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47685275	47685275	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	81	288	0	ENST00000347630.2:c.675del	p.Phe225LeufsTer30	p.F225Lfs*30	ENST00000347630	NM_001007230.1	225	ttT/tt																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202555	67202555	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201231114		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	292	922	0	ENST00000312629.5:c.1364C>T	p.Pro455Leu	p.P455L	ENST00000312629	NM_003952.2	455	cCg/cTg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098037	178098037	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	21	269	0	ENST00000397062.3:c.343T>A	p.Tyr115Asn	p.Y115N	ENST00000397062	NM_006164.4	115	Tac/Aac																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469931	25469931	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1290621612		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	210	635	0	ENST00000264709.3:c.1111G>A	p.Glu371Lys	p.E371K	ENST00000264709	NM_175629.2	371	Gag/Aag																																																																															
MPL	4352	MSKCC	GRCh37	1	43804993	43804993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	145	495	0	ENST00000372470.3:c.443G>A	p.Gly148Glu	p.G148E	ENST00000372470	NM_005373.2	148	gGg/gAg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115263266	115263266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	216	641	0	ENST00000438362.2:c.2084G>A	p.Gly695Glu	p.G695E	ENST00000438362	NM_001242891.1	695	gGg/gAg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462092	120462092	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148613210		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	229	714	1	ENST00000256646.2:c.5624G>A	p.Arg1875Gln	p.R1875Q	ENST00000256646	NM_024408.3	1875	cGg/cAg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102196288	102196288	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	68	205	0	ENST00000263464.3:c.945G>A	p.Trp315Ter	p.W315*	ENST00000263464	NM_001165.4	315	tgG/tgA																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376795	118376795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	140	339	0	ENST00000534358.1:c.10188G>T	p.Gln3396His	p.Q3396H	ENST00000534358	NM_005933.3	3396	caG/caT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446120	49446121	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	75	882	0	ENST00000301067.7:c.1345dup	p.Leu449ProfsTer6	p.L449Pfs*6	ENST00000301067	NM_003482.3	449	ctg/cCtg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914328	32914328	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs80358811		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	93	338	0	ENST00000380152.3:c.5836T>C	p.Ser1946Pro	p.S1946P	ENST00000380152		1946	Tca/Cca																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643701	38643701	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	221	563	0	ENST00000299084.4:c.1171T>C	p.Cys391Arg	p.C391R	ENST00000299084	NM_152594.2	391	Tgt/Cgt																																																																															
MGA	23269	MSKCC	GRCh37	15	42042241	42042242	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	116	331	0	ENST00000219905.7:c.6437_6438del	p.Lys2146SerfsTer7	p.K2146Sfs*7	ENST00000219905	NM_001164273.1	2146	AAa/a																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99460036	99460036	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777846544		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	180	348	0	ENST00000268035.6:c.2132C>T	p.Ala711Val	p.A711V	ENST00000268035	NM_000875.3	711	gCc/gTc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3645677	3645677	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755500401		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	293	767	0	ENST00000294008.3:c.1942G>A	p.Gly648Ser	p.G648S	ENST00000294008	NM_032444.2	648	Ggc/Agc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032156	10032156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	176	539	0	ENST00000330684.3:c.667C>A	p.His223Asn	p.H223N	ENST00000330684	NM_001134407.1	223	Cac/Aac																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGG			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	73	735	0	ENST00000285071.4:c.1283_1285dup	p.Pro428dup	p.P428dup	ENST00000285071	NM_144997.5	428	cac/cCCCac																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760927	59760927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	107	407	0	ENST00000259008.2:c.3480C>A	p.Asn1160Lys	p.N1160K	ENST00000259008	NM_032043.2	1160	aaC/aaA																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271755	15271755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	327	1190	0	ENST00000263388.2:c.6684C>A	p.Ser2228Arg	p.S2228R	ENST00000263388	NM_000435.2	2228	agC/agA																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260136	19260136	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	82	735	1	ENST00000162023.5:c.157C>A	p.Arg53Ser	p.R53S	ENST00000162023		53	Cgc/Agc																																																																															
CIC	23152	MSKCC	GRCh37	19	42795322	42795322	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	249	921	0	ENST00000575354.2:c.2402G>C	p.Gly801Ala	p.G801A	ENST00000575354	NM_015125.3	801	gGc/gCc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905183	50905183	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	109	935	1	ENST00000440232.2:c.463+2T>C		p.X155_splice	ENST00000440232	NM_002691.3	155																																																																																
PDCD1	5133	MSKCC	GRCh37	2	242793220	242793220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	274	934	0	ENST00000334409.5:c.857G>T	p.Trp286Leu	p.W286L	ENST00000334409	NM_005018.2	286	tGg/tTg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026821	71026823	+	inframe_deletion	In_Frame_Del	DEL	TGG	TGG	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	41	183	0	ENST00000318789.4:c.1399_1401del	p.Pro467del	p.P467del	ENST00000318789	NM_032682.5	467	CCA/-																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31435883	31435883	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	101	317	0	ENST00000344624.3:c.3031A>G	p.Met1011Val	p.M1011V	ENST00000344624		1011	Atg/Gtg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721760	176721760	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587784216		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	130	452	0	ENST00000439151.2:c.7391G>A	p.Arg2464His	p.R2464H	ENST00000439151	NM_022455.4	2464	cGc/cAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453142	140453142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	65	273	0	ENST00000288602.6:c.1793C>T	p.Ala598Val	p.A598V	ENST00000288602	NM_004333.4	598	gCt/gTt																																																																															
FANCC	2176	MSKCC	GRCh37	9	97887441	97887441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	153	429	1	ENST00000289081.3:c.923C>T	p.Ala308Val	p.A308V	ENST00000289081	NM_000136.2	308	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0045466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	70	734	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913386		P-0045466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	69	506	0	ENST00000304494.5:c.341C>A	p.Pro114His	p.P114H	ENST00000304494	NM_000077.4	114	cCc/cAc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894876	101894876	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	28	276	1	ENST00000374994.4:c.429G>T	p.Leu143Phe	p.L143F	ENST00000374994	NM_004612.2	143	ttG/ttT																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894934	101894934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	28	259	0	ENST00000374994.4:c.487G>A	p.Asp163Asn	p.D163N	ENST00000374994	NM_004612.2	163	Gac/Aac																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894946	101894946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	29	247	0	ENST00000374994.4:c.499G>T	p.Asp167Tyr	p.D167Y	ENST00000374994	NM_004612.2	167	Gat/Tat																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894964	101894964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	26	233	0	ENST00000374994.4:c.517G>C	p.Glu173Gln	p.E173Q	ENST00000374994	NM_004612.2	173	Gag/Cag																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894982	101894982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	24	203	0	ENST00000374994.4:c.535G>A	p.Asp179Asn	p.D179N	ENST00000374994	NM_004612.2	179	Gac/Aac																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894994	101894994	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1452337021		P-0045466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	20	191	0	ENST00000374994.4:c.547G>A	p.Asp183Asn	p.D183N	ENST00000374994	NM_004612.2	183	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0045550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	112	523	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0045550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	60	328	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56486587	56486587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	72	553	0	ENST00000267101.3:c.1166C>T	p.Thr389Ile	p.T389I	ENST00000267101	NM_001982.3	389	aCa/aTa																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68758694	68758694	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	78	182	0	ENST00000487270.1:c.850G>C	p.Glu284Gln	p.E284Q	ENST00000487270	NM_133509.3	284	Gaa/Caa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350358	89350358	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	206	492	0	ENST00000301030.4:c.2592C>G	p.Asp864Glu	p.D864E	ENST00000301030	NM_001256183.1	864	gaC/gaG																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099931	157099931	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	100	221	0	ENST00000346085.5:c.868T>G	p.Tyr290Asp	p.Y290D	ENST00000346085	NM_020732.3	290	Tac/Gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs985033810		P-0045660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	201	509	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247373	153247373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	40	199	0	ENST00000281708.4:c.1429G>A	p.Gly477Ser	p.G477S	ENST00000281708	NM_033632.3	477	Ggt/Agt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120258	70120259	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	484	539	0	ENST00000245479.2:c.1261dup	p.Ser421LysfsTer157	p.S421Kfs*157	ENST00000245479	NM_000346.3	420	-/A																																																																															
ALK	238	MSKCC	GRCh37	2	29917730	29917730	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	132	579	0	ENST00000389048.3:c.938A>C	p.Lys313Thr	p.K313T	ENST00000389048	NM_004304.4	313	aAg/aCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420432	49420432	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778486		P-0045660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	177	599	1	ENST00000301067.7:c.15317G>A	p.Arg5106His	p.R5106H	ENST00000301067	NM_003482.3	5106	cGc/cAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008044	29008044	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0045660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	46	298	0	ENST00000282397.4:c.725T>A	p.Leu242Ter	p.L242*	ENST00000282397	NM_002019.4	242	tTa/tAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72863717	72863717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	239	497	0	ENST00000268489.5:c.3490G>A	p.Ala1164Thr	p.A1164T	ENST00000268489	NM_006885.3	1164	Gct/Act																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119936	70119937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0045660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	55	385	0	ENST00000245479.2:c.940_941dup	p.Tyr315ProfsTer69	p.Y315Pfs*69	ENST00000245479	NM_000346.3	313	gtc/gtCAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249400	153249400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	84	362	0	ENST00000281708.4:c.1378C>T	p.His460Tyr	p.H460Y	ENST00000281708	NM_033632.3	460	Cat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0045717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	56	175	2	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0045717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	274	470	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448570	89448570	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1472226095		P-0045717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	111	357	0	ENST00000336596.2:c.1534C>T	p.Arg512Ter	p.R512*	ENST00000336596	NM_005233.5	512	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	45	158	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195475	102195475	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	67	305	0	ENST00000263464.3:c.235G>C	p.Gly79Arg	p.G79R	ENST00000263464	NM_001165.4	79	Gga/Cga																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675215	30675215	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	112	416	0	ENST00000376406.3:c.3030G>C	p.Lys1010Asn	p.K1010N	ENST00000376406	NM_014641.2	1010	aaG/aaC																																																																															
CARD11	84433	MSKCC	GRCh37	7	2956983	2956983	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1223006535		P-0045717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	98	424	0	ENST00000396946.4:c.2644G>A	p.Asp882Asn	p.D882N	ENST00000396946	NM_032415.4	882	Gac/Aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0045809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			570	191	439	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0045809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			710	118	495	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783730	50783730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			738	40	488	0	ENST00000398568.2:c.121G>A	p.Val41Ile	p.V41I	ENST00000398568	NM_001042412.1	41	Gta/Ata																																																																															
MSH3	4437	MSKCC	GRCh37	5	79974795	79974795	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			824	47	508	0	ENST00000265081.6:c.1223C>G	p.Ser408Cys	p.S408C	ENST00000265081	NM_002439.4	408	tCt/tGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0045858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	24	252	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610486	81610486	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	25	233	0	ENST00000298171.2:c.2084A>C	p.Lys695Thr	p.K695T	ENST00000298171	NM_000369.2	695	aAg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579533	7579533	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	135	488	0	ENST00000269305.4:c.154del	p.Gln52AsnfsTer71	p.Q52Nfs*71	ENST00000269305	NM_001126112.2	52	Caa/aa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264890	46264890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	25	279	0	ENST00000371998.3:c.1760C>T	p.Ser587Leu	p.S587L	ENST00000371998		587	tCa/tTa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591891	48591891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912581		P-0045898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	135	428	0	ENST00000342988.3:c.1054G>A	p.Gly352Arg	p.G352R	ENST00000342988	NM_005359.5	352	Gga/Aga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0045898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	93	325	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C	rs886039483		P-0045898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	171	577	0	ENST00000269305.4:c.376T>G	p.Tyr126Asp	p.Y126D	ENST00000269305	NM_001126112.2	126	Tac/Gac																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120460349	120460349	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	122	437	0	ENST00000256646.2:c.5966A>C	p.Asn1989Thr	p.N1989T	ENST00000256646	NM_024408.3	1989	aAt/aCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578181	7578181	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138983188		P-0046055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	214	649	1	ENST00000269305.4:c.668C>T	p.Pro223Leu	p.P223L	ENST00000269305	NM_001126112.2	223	cCt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0046055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	329	1061	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	127	230	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727513	88727513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374069724		P-0046055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	159	602	0	ENST00000360948.2:c.266G>A	p.Arg89His	p.R89H	ENST00000360948	NM_001012338.2	89	cGc/cAc																																																																															
BCL6	604	MSKCC	GRCh37	3	187440334	187440334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	76	573	0	ENST00000232014.4:c.2033G>A	p.Arg678His	p.R678H	ENST00000232014	NM_001130845.1	678	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882025		P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	208	349	0	ENST00000269305.4:c.646G>C	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ctg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11129671	11129671	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	287	385	0	ENST00000344626.4:c.2481del	p.Ser828ProfsTer3	p.S828Pfs*3	ENST00000344626	NM_003072.3	826	gCc/gc																																																																															
APC	324	MSKCC	GRCh37	5	112111390	112111390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs863225362		P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	55	120	0	ENST00000257430.4:c.487C>T	p.Gln163Ter	p.Q163*	ENST00000257430	NM_000038.5	163	Cag/Tag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672767	30672767	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1300485516		P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	111	347	1	ENST00000376406.3:c.4193G>T	p.Arg1398Ile	p.R1398I	ENST00000376406	NM_014641.2	1398	aGa/aTa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111168	193111168	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	162	108	0	ENST00000367435.3:c.701G>C	p.Arg234Pro	p.R234P	ENST00000367435	NM_024529.4	234	cGa/cCa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118372403	118372403	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	112	241	1	ENST00000534358.1:c.6336G>C	p.Glu2112Asp	p.E2112D	ENST00000534358	NM_005933.3	2112	gaG/gaC																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641506	18641506	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	41	154	0	ENST00000266497.5:c.2505C>G	p.Ile835Met	p.I835M	ENST00000266497		835	atC/atG																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856026	111856026	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	233	351	0	ENST00000341259.2:c.77G>T	p.Trp26Leu	p.W26L	ENST00000341259	NM_005475.2	26	tGg/tTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562804	95562804	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs772462662		P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	59	180	0	ENST00000343455.3:c.4453A>C	p.Lys1485Gln	p.K1485Q	ENST00000343455	NM_177438.2	1485	Aaa/Caa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724623	43724623	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	246	430	0	ENST00000382044.4:c.3444G>C	p.Leu1148Phe	p.L1148F	ENST00000382044	NM_001141980.1	1148	ttG/ttC																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43733751	43733751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	108	190	0	ENST00000382044.4:c.3071C>T	p.Ser1024Phe	p.S1024F	ENST00000382044	NM_001141980.1	1024	tCt/tTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831674	72831674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	216	356	0	ENST00000268489.5:c.4907G>A	p.Ser1636Asn	p.S1636N	ENST00000268489	NM_006885.3	1636	aGc/aAc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11999012	11999012	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	87	135	0	ENST00000353533.5:c.513+1G>T		p.X171_splice	ENST00000353533	NM_003010.3	171																																																																																
SPOP	8405	MSKCC	GRCh37	17	47679358	47679358	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	181	225	0	ENST00000347630.2:c.849G>C	p.Glu283Asp	p.E283D	ENST00000347630	NM_001007230.1	283	gaG/gaC																																																																															
ACVR1	90	MSKCC	GRCh37	2	158622538	158622538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	301	272	0	ENST00000263640.3:c.961A>G	p.Ile321Val	p.I321V	ENST00000263640	NM_001105.4	321	Ata/Gta																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119595335	119595335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	120	144	0	ENST00000316626.5:c.834G>T	p.Arg278Ser	p.R278S	ENST00000316626		278	agG/agT																																																																															
TP63	8626	MSKCC	GRCh37	3	189526299	189526299	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	91	284	0	ENST00000264731.3:c.563A>T	p.Lys188Met	p.K188M	ENST00000264731	NM_003722.4	188	aAg/aTg																																																																															
TP63	8626	MSKCC	GRCh37	3	189582116	189582117	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	65	262	0	ENST00000264731.3:c.675_676delinsAA	p.Arg226Ser	p.R226S	ENST00000264731	NM_003722.4	225	atCCgc/atAAgc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980496	1980496	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151213547		P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	215	530	0	ENST00000382895.3:c.3958C>T	p.Arg1320Trp	p.R1320W	ENST00000382895	NM_133330.2	1320	Cgg/Tgg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133583	55133583	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	68	264	0	ENST00000257290.5:c.887C>A	p.Thr296Asn	p.T296N	ENST00000257290	NM_006206.4	296	aCc/aAc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131940638	131940638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	127	187	0	ENST00000265335.6:c.2665G>A	p.Glu889Lys	p.E889K	ENST00000265335		889	Gag/Aag																																																																															
IRF4	3662	MSKCC	GRCh37	6	397235	397235	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	112	216	0	ENST00000380956.4:c.620G>T	p.Gly207Val	p.G207V	ENST00000380956	NM_001195286.1	207	gGc/gTc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675492	30675492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	272	410	0	ENST00000376406.3:c.2864G>A	p.Ser955Asn	p.S955N	ENST00000376406	NM_014641.2	955	aGc/aAc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32181023	32181023	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	296	455	0	ENST00000375023.3:c.2327G>T	p.Cys776Phe	p.C776F	ENST00000375023	NM_004557.3	776	tGc/tTc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157222519	157222519	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	287	289	0	ENST00000346085.5:c.1786C>G	p.Gln596Glu	p.Q596E	ENST00000346085	NM_020732.3	596	Cag/Gag																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864481	162864481	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	138	218	1	ENST00000366898.1:c.32A>T	p.His11Leu	p.H11L	ENST00000366898	NM_004562.2	11	cAt/cTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949733	151949733	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	138	196	0	ENST00000262189.6:c.1367G>C	p.Cys456Ser	p.C456S	ENST00000262189	NM_170606.2	456	tGt/tCt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38315034	38315034	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	222	343	0	ENST00000425967.3:c.30G>C	p.Arg10Ser	p.R10S	ENST00000425967	NM_001174067.1	10	agG/agC																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70971032	70971032	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	147	323	0	ENST00000276594.2:c.1229C>A	p.Thr410Asn	p.T410N	ENST00000276594	NM_024504.3	410	aCc/aAc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739643	145739643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1544	357	561	0	ENST00000428558.2:c.1808G>A	p.Cys603Tyr	p.C603Y	ENST00000428558	NM_004260.3	603	tGc/tAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039873	47039873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	314	480	0	ENST00000329236.7:c.982G>A	p.Ala328Thr	p.A328T	ENST00000329236	NM_001204466.1	328	Gcc/Acc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044531	47044531	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	208	448	0	ENST00000329236.7:c.1794C>G	p.Ile598Met	p.I598M	ENST00000329236	NM_001204466.1	598	atC/atG																																																																															
ATM	472	MSKCC	GRCh37	11	108199901	108199901	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046178-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			42	108	181	0	ENST00000278616.4:c.7243G>C	p.Ala2415Pro	p.A2415P	ENST00000278616	NM_000051.3	2415	Gct/Cct																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572140	64572153	+	frameshift_variant	Frame_Shift_Del	DEL	AGTGCTGGCTTCTT	AGTGCTGGCTTCTT	-			P-0046178-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			142	276	817	0	ENST00000337652.1:c.1501_1514del	p.Lys501GlyfsTer30	p.K501Gfs*30	ENST00000337652	NM_130803.2	501	AAGAAGCCAGCACTg/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	584	824	0	ENST00000269305.4:c.298del	p.Gln100ArgfsTer23	p.Q100Rfs*23	ENST00000269305	NM_001126112.2	100	Cag/ag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27058004	27058004	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	405	601	0	ENST00000324856.7:c.1712C>A	p.Ser571Ter	p.S571*	ENST00000324856	NM_006015.4	571	tCg/tAg																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612790	228612790	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	522	796	0	ENST00000366696.1:c.237T>A	p.Phe79Leu	p.F79L	ENST00000366696	NM_003493.2	79	ttT/ttA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437988	49437988	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	259	690	1	ENST00000301067.7:c.5183A>G	p.Asp1728Gly	p.D1728G	ENST00000301067	NM_003482.3	1728	gAc/gGc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991861	72991861	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	231	626	1	ENST00000268489.5:c.2184C>G	p.Cys728Trp	p.C728W	ENST00000268489	NM_006885.3	728	tgC/tgG																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78599536	78599536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	184	562	0	ENST00000306801.3:c.208G>A	p.Val70Met	p.V70M	ENST00000306801	NM_020761.2	70	Gtg/Atg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298723	15298723	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	339	899	0	ENST00000263388.2:c.1575G>C	p.Gln525His	p.Q525H	ENST00000263388	NM_000435.2	525	caG/caC																																																																															
BCL6	604	MSKCC	GRCh37	3	187449717	187449717	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	174	318	0	ENST00000232014.4:c.163G>C	p.Gly55Arg	p.G55R	ENST00000232014	NM_001130845.1	55	Ggc/Cgc																																																																															
TP63	8626	MSKCC	GRCh37	3	189586386	189586386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	123	323	0	ENST00000264731.3:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000264731	NM_003722.4	337	cGa/cTa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280034	66280034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	51	221	0	ENST00000273854.3:c.1655G>A	p.Ser552Asn	p.S552N	ENST00000273854	NM_004439.5	552	aGt/aAt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609752	117609752	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs773542381		P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	165	412	0	ENST00000368508.3:c.6947G>T	p.Cys2316Phe	p.C2316F	ENST00000368508	NM_002944.2	2316	tGc/tTc																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540131	23540131	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	88	261	0	ENST00000380871.4:c.272del	p.Ala91GlufsTer46	p.A91Efs*46	ENST00000380871	NM_006167.3	91	gCa/ga																																																																															
ARAF	369	MSKCC	GRCh37	X	47426451	47426451	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1229309673		P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	265	382	0	ENST00000377045.4:c.794C>T	p.Ser265Leu	p.S265L	ENST00000377045	NM_001654.4	265	tCg/tTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443617	49443618	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	240	680	2	ENST00000301067.7:c.3753_3754delinsT	p.Arg1252GlufsTer78	p.R1252Efs*78	ENST00000301067	NM_003482.3	1251	gcCCga/gcTga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242478	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAG	AATTAAGAGAAG	CAC	rs727503015		P-0046296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	121	309	0	ENST00000275493.2:c.2237_2248delinsCAC	p.Glu746_Ala750delinsAlaPro	p.E746_A750delinsAP	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGca/gCACca																																																																															
MED12	9968	MSKCC	GRCh37	X	70356394	70356412	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAGAGCCCCCCAAAACT	TCCAGAGCCCCCCAAAACT	CGGCTCCAG			P-0046296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	160	679	0	ENST00000374080.3:c.5289_5307delinsCGGCTCCAG	p.Pro1764GlyfsTer48	p.P1764Gfs*48	ENST00000374080		1763	gcTCCAGAGCCCCCCAAAACT/gcCGGCTCCAG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0046327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	243	549	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114905847	114905847	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	246	567	0	ENST00000543371.1:c.866C>G	p.Ser289Cys	p.S289C	ENST00000543371	NM_001198531.1	289	tCc/tGc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40354401	40354401	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	211	1036	0	ENST00000293328.3:c.2194C>G	p.Pro732Ala	p.P732A	ENST00000293328	NM_012448.3	732	Cca/Gca																																																																															
BCL6	604	MSKCC	GRCh37	3	187444589	187444589	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0046327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	147	680	0	ENST00000232014.4:c.1638C>G	p.Tyr546Ter	p.Y546*	ENST00000232014	NM_001130845.1	546	taC/taG																																																																															
TET2	54790	MSKCC	GRCh37	4	106182986	106182986	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	59	264	0	ENST00000380013.4:c.4025C>G	p.Pro1342Arg	p.P1342R	ENST00000380013	NM_001127208.2	1342	cCt/cGt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117631339	117631339	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	86	396	0	ENST00000368508.3:c.6339T>A	p.Asp2113Glu	p.D2113E	ENST00000368508	NM_002944.2	2113	gaT/gaA																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139397668	139397668	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	98	688	0	ENST00000277541.6:c.5133C>A	p.Ser1711Arg	p.S1711R	ENST00000277541	NM_017617.3	1711	agC/agA																																																																															
RB1	5925	MSKCC	GRCh37	13	49050819	49050876	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAATTCTGTAATTTGTAGACTTCTGAGAAGTTCCAGAAAATAAATCAGATGGTATGTA	GAATTCTGTAATTTGTAGACTTCTGAGAAGTTCCAGAAAATAAATCAGATGGTATGTA	TCATTTGAGC			P-0046327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	41	335	1	ENST00000267163.4:c.2521-18_2560delinsTCATTTGAGC		p.X841_splice	ENST00000267163	NM_000321.2	841																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0046454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	237	173	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579330	7579330	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	673	635	1	ENST00000269305.4:c.357del	p.Lys120SerfsTer3	p.K120Sfs*3	ENST00000269305	NM_001126112.2	119	gcC/gc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	-	rs121913425		P-0046454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	216	319	0	ENST00000275493.2:c.2237_2251del	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gca																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106074	8106075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	175	535	0	ENST00000346208.3:c.898dup	p.Leu300ProfsTer3	p.L300Pfs*3	ENST00000346208		298	-/C																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125513705	125513705	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	80	399	0	ENST00000428830.2:c.833T>A	p.Val278Asp	p.V278D	ENST00000428830	NM_001114121.2	278	gTc/gAc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89849269	89849269	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0046560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	136	577	0	ENST00000389301.3:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000389301	NM_000135.2	542	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0046560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	231	814	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214646	5214646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	234	981	0	ENST00000357368.4:c.4420G>A	p.Asp1474Asn	p.D1474N	ENST00000357368	NM_002850.3	1474	Gac/Aac																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222841	5222841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	126	307	0	ENST00000357368.4:c.2962G>A	p.Glu988Lys	p.E988K	ENST00000357368	NM_002850.3	988	Gag/Aag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223186	5223186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	184	705	0	ENST00000357368.4:c.2617G>A	p.Glu873Lys	p.E873K	ENST00000357368	NM_002850.3	873	Gag/Aag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5225855	5225856	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TA			P-0046560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	213	746	0	ENST00000357368.4:c.2377-1_2377delinsTA		p.X793_splice	ENST00000357368	NM_002850.3	793																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5229552	5229552	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	57	121	0	ENST00000357368.4:c.2299G>T	p.Glu767Ter	p.E767*	ENST00000357368	NM_002850.3	767	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0046560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	339	518	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671263	30671263	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	353	647	0	ENST00000376406.3:c.5614G>C	p.Glu1872Gln	p.E1872Q	ENST00000376406	NM_014641.2	1872	Gag/Cag																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864788	117864788	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0046560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	122	343	0	ENST00000297338.2:c.1321G>A	p.Asp441Asn	p.D441N	ENST00000297338	NM_006265.2	441	Gat/Aat																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139403423	139403423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	226	995	0	ENST00000277541.6:c.3070G>A	p.Glu1024Lys	p.E1024K	ENST00000277541	NM_017617.3	1024	Gag/Aag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678515	88678516	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0046736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	21	519	1	ENST00000360948.2:c.1020_1021delinsTT	p.Gln340_Pro341delinsHisSer	p.Q340_P341delinsHS	ENST00000360948	NM_001012338.2	340	caGCct/caTTct																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170360	32170360	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	31	757	0	ENST00000375023.3:c.3248C>G	p.Thr1083Ser	p.T1083S	ENST00000375023	NM_004557.3	1083	aCc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0046931-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			686	363	709	5	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0046931-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	57	308	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604789	48604789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046931-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	180	384	0	ENST00000342988.3:c.1611C>A	p.Asp537Glu	p.D537E	ENST00000342988	NM_005359.5	537	gaC/gaA																																																																															
MGA	23269	MSKCC	GRCh37	15	42054377	42054377	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046931-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			285	147	296	0	ENST00000219905.7:c.7561C>T	p.Gln2521Ter	p.Q2521*	ENST00000219905	NM_001164273.1	2521	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112170717	112170718	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATAT			P-0046931-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			654	270	501	1	ENST00000257430.4:c.1816_1819dup	p.Cys607TyrfsTer28	p.C607Yfs*28	ENST00000257430	NM_000038.5	605	gat/gATATat																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519912		P-0046943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	240	332	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353879	15353879	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753808683		P-0046943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	152	468	0	ENST00000263377.2:c.3001C>T	p.Pro1001Ser	p.P1001S	ENST00000263377	NM_058243.2	1001	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0046952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	525	757	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0046952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	41	204	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8492861	8492861	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0046952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	113	463	0	ENST00000356435.5:c.2467+1G>T		p.X823_splice	ENST00000356435		823																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0047012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	137	108	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0047012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	363	720	0	ENST00000269305.4:c.376-2A>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
TEK	7010	MSKCC	GRCh37	9	27158132	27158132	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773256013		P-0047012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	73	333	0	ENST00000380036.4:c.356G>A	p.Arg119His	p.R119H	ENST00000380036	NM_000459.3	119	cGt/cAt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16001703	16001703	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1176533842		P-0047012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	94	274	0	ENST00000268712.3:c.2798G>A	p.Arg933Gln	p.R933Q	ENST00000268712	NM_006311.3	933	cGa/cAa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061086	38061186	+	frameshift_variant	Frame_Shift_Del	DEL	AGAGGCGCCAGAGGGGTCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGC	AGAGGCGCCAGAGGGGTCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGC	-			P-0047012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	143	335	0	ENST00000250448.2:c.803_903del	p.Cys268Ter	p.C268*	ENST00000250448	NM_004496.3	268	tGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGCGGCCCTGAGAGCCGCAAGGACCCCTCTGGCGCCTCT/t																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	129	523	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912660		P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	157	576	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732318	74732318	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	82	339	0	ENST00000359995.5:c.591G>C	p.Lys197Asn	p.K197N	ENST00000359995	NM_001195427.1	197	aaG/aaC																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535450	66535450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	78	400	0	ENST00000273854.3:c.11C>T	p.Ser4Leu	p.S4L	ENST00000273854	NM_004439.5	4	tCg/tTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105685	27105685	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	95	299	0	ENST00000324856.7:c.5296G>T	p.Glu1766Ter	p.E1766*	ENST00000324856	NM_006015.4	1766	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579418	7579418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	152	679	0	ENST00000269305.4:c.269C>T	p.Ser90Phe	p.S90F	ENST00000269305	NM_001126112.2	90	tCc/tTc																																																																															
CASP8	841	MSKCC	GRCh37	2	202139650	202139650	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	70	249	0	ENST00000358485.4:c.811C>G	p.Pro271Ala	p.P271A	ENST00000358485	NM_001080125.1	271	Cca/Gca																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259172	36259172	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	143	629	0	ENST00000300305.3:c.319C>G	p.Arg107Gly	p.R107G	ENST00000300305		107	Cgc/Ggc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106387	27106387	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	106	464	0	ENST00000324856.7:c.5998G>C	p.Glu2000Gln	p.E2000Q	ENST00000324856	NM_006015.4	2000	Gag/Cag																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39321501	39321501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	77	401	0	ENST00000373001.3:c.520G>A	p.Glu174Lys	p.E174K	ENST00000373001	NM_022157.3	174	Gag/Aag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65310500	65310500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	98	465	0	ENST00000342505.4:c.2188G>A	p.Glu730Lys	p.E730K	ENST00000342505	NM_002227.2	730	Gag/Aag																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176176059	176176059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	148	532	0	ENST00000367669.3:c.56C>T	p.Ser19Leu	p.S19L	ENST00000367669	NM_022457.5	19	tCg/tTg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123325023	123325023	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	100	525	0	ENST00000358487.5:c.305C>G	p.Ser102Cys	p.S102C	ENST00000358487	NM_000141.4	102	tCc/tGc																																																																															
RB1	5925	MSKCC	GRCh37	13	48955539	48955539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146236493		P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	32	270	0	ENST00000267163.4:c.1655G>A	p.Arg552Gln	p.R552Q	ENST00000267163	NM_000321.2	552	cGa/cAa																																																																															
RAD51	5888	MSKCC	GRCh37	15	41022122	41022122	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	118	500	0	ENST00000267868.3:c.846T>A	p.Asp282Glu	p.D282E	ENST00000267868	NM_002875.4	282	gaT/gaA																																																																															
NUP93	9688	MSKCC	GRCh37	16	56875655	56875655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	80	456	0	ENST00000308159.5:c.2259G>A	p.Met753Ile	p.M753I	ENST00000308159	NM_014669.4	753	atG/atA																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645927	67645927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	103	464	0	ENST00000264010.4:c.855G>T	p.Met285Ile	p.M285I	ENST00000264010	NM_006565.3	285	atG/atT																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348701	89348701	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs151040526		P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	147	757	0	ENST00000301030.4:c.4249G>C	p.Asp1417His	p.D1417H	ENST00000301030	NM_001256183.1	1417	Gat/Cat																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349070	89349070	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs144053389		P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	201	780	0	ENST00000301030.4:c.3880G>C	p.Glu1294Gln	p.E1294Q	ENST00000301030	NM_001256183.1	1294	Gaa/Caa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349405	89349405	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	181	843	0	ENST00000301030.4:c.3545G>C	p.Arg1182Thr	p.R1182T	ENST00000301030	NM_001256183.1	1182	aGa/aCa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350609	89350609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	189	727	1	ENST00000301030.4:c.2341G>A	p.Asp781Asn	p.D781N	ENST00000301030	NM_001256183.1	781	Gat/Aat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125671	47125671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	81	312	0	ENST00000409792.3:c.5599G>A	p.Glu1867Lys	p.E1867K	ENST00000409792	NM_014159.6	1867	Gaa/Aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187522556	187522556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	90	338	0	ENST00000441802.2:c.11507G>C	p.Gly3836Ala	p.G3836A	ENST00000441802	NM_005245.3	3836	gGa/gCa																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250101	110250101	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1169388589		P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	115	652	0	ENST00000374672.4:c.574G>T	p.Asp192Tyr	p.D192Y	ENST00000374672	NM_004235.4	192	Gac/Tac																																																																															
POLE	5426	MSKCC	GRCh37	12	133220115	133220115	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047288-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			813	60	784	0	ENST00000320574.5:c.4322T>A	p.Leu1441Gln	p.L1441Q	ENST00000320574	NM_006231.2	1441	cTg/cAg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988331	36988331	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047288-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			415	39	377	0	ENST00000354822.5:c.322del	p.Leu108SerfsTer17	p.L108Sfs*17	ENST00000354822	NM_001079668.2	108	Ctc/tc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519920		P-0047504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	85	314	1	ENST00000397062.3:c.85G>T	p.Asp29Tyr	p.D29Y	ENST00000397062	NM_006164.4	29	Gat/Tat																																																																															
MGA	23269	MSKCC	GRCh37	15	41989060	41989060	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	154	468	0	ENST00000219905.7:c.1852C>T	p.Arg618Ter	p.R618*	ENST00000219905	NM_001164273.1	618	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0047598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	498	617	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166118	118166118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	144	450	0	ENST00000369448.3:c.628G>A	p.Val210Met	p.V210M	ENST00000369448	NM_017709.3	210	Gtg/Atg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	443406	443406	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0047598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	107	275	0	ENST00000399788.2:c.1490+1G>C		p.X497_splice	ENST00000399788	NM_001042603.1	497																																																																																
WHSC1L1	54904	MSKCC	GRCh37	8	38153464	38153464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	70	365	0	ENST00000317025.8:c.2765G>T	p.Arg922Ile	p.R922I	ENST00000317025	NM_023034.1	922	aGa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0047634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	284	591	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																															
ATM	472	MSKCC	GRCh37	11	108188136	108188136	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1800060		P-0047634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	45	214	0	ENST00000278616.4:c.6235G>A	p.Val2079Ile	p.V2079I	ENST00000278616	NM_000051.3	2079	Gtc/Atc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021817	71021817	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs797045586		P-0047634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	49	185	0	ENST00000318789.4:c.1541G>A	p.Arg514His	p.R514H	ENST00000318789	NM_032682.5	514	cGt/cAt																																																																															
RET	5979	MSKCC	GRCh37	10	43609990	43609990	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77711105		P-0047634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	176	817	1	ENST00000355710.3:c.1942G>A	p.Val648Ile	p.V648I	ENST00000355710	NM_020975.4	648	Gtc/Atc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56494908	56494908	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs551223118		P-0047634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	159	502	0	ENST00000267101.3:c.3265C>T	p.Arg1089Trp	p.R1089W	ENST00000267101	NM_001982.3	1089	Cgg/Tgg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28623858	28623858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	74	389	0	ENST00000241453.7:c.796G>A	p.Glu266Lys	p.E266K	ENST00000241453	NM_004119.2	266	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097796	27097796	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0047634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	246	351	0	ENST00000324856.7:c.3385A>T	p.Lys1129Ter	p.K1129*	ENST00000324856	NM_006015.4	1129	Aag/Tag																																																																															
FLT1	2321	MSKCC	GRCh37	13	28883002	28883002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs115595062		P-0047634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	408	410	0	ENST00000282397.4:c.3698C>T	p.Pro1233Leu	p.P1233L	ENST00000282397	NM_002019.4	1233	cCg/cTg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701190	43701190	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	136	445	0	ENST00000382044.4:c.5505G>A	p.Trp1835Ter	p.W1835*	ENST00000382044	NM_001141980.1	1835	tgG/tgA																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5215597	5215597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	164	718	0	ENST00000357368.4:c.4106G>A	p.Ser1369Asn	p.S1369N	ENST00000357368	NM_002850.3	1369	aGc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	282	656	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913315		P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	351	761	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699237	117699237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	61	320	0	ENST00000369458.3:c.404C>T	p.Ser135Phe	p.S135F	ENST00000369458	NM_024626.3	135	tCt/tTt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180052917	180052917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	458	846	0	ENST00000261937.6:c.1373G>T	p.Trp458Leu	p.W458L	ENST00000261937	NM_182925.4	458	tGg/tTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435146	18435146	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	54	265	0	ENST00000266497.5:c.131T>C	p.Val44Ala	p.V44A	ENST00000266497		44	gTa/gCa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679173	88679173	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	94	430	0	ENST00000360948.2:c.864C>A	p.Asn288Lys	p.N288K	ENST00000360948	NM_001012338.2	288	aaC/aaA																																																																															
JAK1	3716	MSKCC	GRCh37	1	65321353	65321353	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	122	518	0	ENST00000342505.4:c.1487A>T	p.Lys496Met	p.K496M	ENST00000342505	NM_002227.2	496	aAg/aTg																																																																															
PARP1	142	MSKCC	GRCh37	1	226567713	226567713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	197	553	1	ENST00000366794.5:c.1453G>T	p.Val485Leu	p.V485L	ENST00000366794	NM_001618.3	485	Gtg/Ttg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416864	121416864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1304	178	835	0	ENST00000257555.6:c.293C>A	p.Ala98Asp	p.A98D	ENST00000257555		98	gCc/gAc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28623615	28623615	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	41	419	0	ENST00000241453.7:c.942T>A	p.Phe314Leu	p.F314L	ENST00000241453	NM_004119.2	314	ttT/ttA																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582969	95582969	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	91	210	0	ENST00000343455.3:c.1573G>C	p.Gly525Arg	p.G525R	ENST00000343455	NM_177438.2	525	Ggt/Cgt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438164	56438164	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	295	766	0	ENST00000407977.2:c.829G>T	p.Glu277Ter	p.E277*	ENST00000407977		277	Gag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144113	11144113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	340	694	1	ENST00000344626.4:c.3694G>T	p.Gly1232Cys	p.G1232C	ENST00000344626	NM_003072.3	1232	Ggc/Tgc																																																																															
ERF	2077	MSKCC	GRCh37	19	42752639	42752639	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1178888044		P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	273	633	0	ENST00000222329.4:c.1625C>T	p.Ser542Phe	p.S542F	ENST00000222329	NM_006494.2	542	tCc/tTc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022714	31022714	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs768911270		P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	208	535	1	ENST00000375687.4:c.2199G>T	p.Gln733His	p.Q733H	ENST00000375687	NM_015338.5	733	caG/caT																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672380	86672380	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	48	208	0	ENST00000274376.6:c.2182G>T	p.Glu728Ter	p.E728*	ENST00000274376	NM_002890.2	728	Gag/Tag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68942864	68942864	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	165	424	1	ENST00000288368.4:c.676G>T	p.Glu226Ter	p.E226*	ENST00000288368	NM_024870.2	226	Gaa/Taa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971042	21971042	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	136	575	0	ENST00000304494.5:c.316del	p.Val106CysfsTer40	p.V106Cfs*40	ENST00000304494	NM_000077.4	106	Gtg/tg																																																																															
MPL	4352	MSKCC	GRCh37	1	43812204	43812204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs751975712		P-0047732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	72	552	0	ENST00000372470.3:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000372470	NM_005373.2	357	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0047732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	136	576	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36216497	36216497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	59	1015	0	ENST00000222270.7:c.3760G>A	p.Val1254Ile	p.V1254I	ENST00000222270	NM_014727.1	1254	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934571		P-0047733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	424	672	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
STAT3	6774	MSKCC	GRCh37	17	40481601	40481601	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	155	559	0	ENST00000264657.5:c.1204G>C	p.Gly402Arg	p.G402R	ENST00000264657	NM_139276.2	402	Ggc/Cgc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40497650	40497650	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	466	529	0	ENST00000264657.5:c.299A>G	p.Glu100Gly	p.E100G	ENST00000264657	NM_139276.2	100	gAg/gGg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57480499	57480499	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	126	322	0	ENST00000371085.3:c.494G>C	p.Arg165Pro	p.R165P	ENST00000371085	NM_000516.4	165	cGc/cCc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396917	139396928	+	inframe_deletion	In_Frame_Del	DEL	GCGGGGGCGGCT	GCGGGGGCGGCT	-			P-0047733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	105	540	0	ENST00000277541.6:c.5180_5191del	p.Glu1727_Pro1731delinsAla	p.E1727_P1731delinsA	ENST00000277541	NM_017617.3	1727	gAGCCGCCCCCGCcg/gcg																																																																															
ATM	472	MSKCC	GRCh37	11	108115670	108115670	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	61	293	0	ENST00000278616.4:c.818A>G	p.Asp273Gly	p.D273G	ENST00000278616	NM_000051.3	273	gAt/gGt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0047742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	650	557	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577095	7577095	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519984		P-0047742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	459	721	1	ENST00000269305.4:c.843C>A	p.Asp281Glu	p.D281E	ENST00000269305	NM_001126112.2	281	gaC/gaA																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521729	89521729	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369167718		P-0047742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	103	353	0	ENST00000336596.2:c.2806G>A	p.Glu936Lys	p.E936K	ENST00000336596	NM_005233.5	936	Gag/Aag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161739	56161751	+	frameshift_variant	Frame_Shift_Del	DEL	TTCACGCATGTCA	TTCACGCATGTCA	-			P-0047742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	162	346	0	ENST00000399503.3:c.1236_1248del	p.Ser413IlefsTer19	p.S413Ifs*19	ENST00000399503	NM_005921.1	412	gtTTCACGCATGTCA/gt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189433	56189439	+	frameshift_variant	Frame_Shift_Del	DEL	TTAGAAC	TTAGAAC	-			P-0047742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	242	425	2	ENST00000399503.3:c.4467_4473del	p.Leu1489PhefsTer13	p.L1489Ffs*13	ENST00000399503	NM_005921.1	1489	TTAGAACtt/tt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0047755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	142	216	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670840	134670840	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	97	407	0	ENST00000398015.3:c.751G>T	p.Gly251Trp	p.G251W	ENST00000398015	NM_004441.4	251	Ggg/Tgg																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045882	26045882	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	101	482	0	ENST00000540144.1:c.244del	p.Asp82ThrfsTer9	p.D82Tfs*9	ENST00000540144	NM_003531.2	82	Gac/ac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660045		P-0047795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	82	260	0	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt																																																																															
ATM	472	MSKCC	GRCh37	11	108186757	108186757	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs864622251		P-0047795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	85	324	0	ENST00000278616.4:c.6115G>A	p.Glu2039Lys	p.E2039K	ENST00000278616	NM_000051.3	2039	Gaa/Aaa																																																																															
ATM	472	MSKCC	GRCh37	11	108129714	108129715	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0047795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	100	276	0	ENST00000278616.4:c.2380_2381del	p.Pro795LysfsTer2	p.P795Kfs*2	ENST00000278616	NM_000051.3	793	aAG/a																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442564	52442575	+	inframe_deletion	In_Frame_Del	DEL	TTCGCCGGGACC	TTCGCCGGGACC	-			P-0047795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	96	311	0	ENST00000460680.1:c.170_181del	p.Arg57_Lys61delinsGln	p.R57_K61delinsQ	ENST00000460680	NM_004656.3	57	cGGTCCCGGCGAAag/cag																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349256	11349256	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047833-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	78	267	0	ENST00000332029.2:c.80C>G	p.Ser27Cys	p.S27C	ENST00000332029	NM_003745.1	27	tCc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	179	346	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767345		P-0047902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	186	385	0	ENST00000342988.3:c.1055G>A	p.Gly352Glu	p.G352E	ENST00000342988	NM_005359.5	352	gGa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0047902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	314	760	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579439	7579439	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201717599		P-0047902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	44	616	0	ENST00000269305.4:c.248C>T	p.Ala83Val	p.A83V	ENST00000269305	NM_001126112.2	83	gCg/gTg																																																																															
CBL	867	MSKCC	GRCh37	11	119149250	119149250	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs200341293		P-0047902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	300	490	1	ENST00000264033.4:c.1258C>T	p.Arg420Ter	p.R420*	ENST00000264033	NM_005188.3	420	Cga/Tga																																																																															
ALK	238	MSKCC	GRCh37	2	29446295	29446295	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1252535185		P-0047902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	133	680	0	ENST00000389048.3:c.3272A>G	p.Asp1091Gly	p.D1091G	ENST00000389048	NM_004304.4	1091	gAc/gGc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488647	212488647	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0047902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	170	283	0	ENST00000342788.4:c.2202A>T	p.Lys734Asn	p.K734N	ENST00000342788	NM_005235.2	734	aaA/aaT																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197246	26197246	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	84	372	0	ENST00000356476.2:c.233A>T	p.Asp78Val	p.D78V	ENST00000356476		78	gAc/gTc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553252	106553252	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	82	577	0	ENST00000369096.4:c.1217A>T	p.Tyr406Phe	p.Y406F	ENST00000369096	NM_001198.3	406	tAc/tTc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729696	41729696	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	257	606	0	ENST00000242208.4:c.833G>C	p.Gly278Ala	p.G278A	ENST00000242208	NM_002192.2	278	gGg/gCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578266	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	269	519	0	ENST00000269305.4:c.583dup	p.Ile195AsnfsTer14	p.I195Nfs*14	ENST00000269305	NM_001126112.2	195	atc/aAtc																																																																															
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	67	135	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665501	138665501	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	188	687	0	ENST00000330315.3:c.64C>G	p.Arg22Gly	p.R22G	ENST00000330315	NM_023067.3	22	Cgc/Ggc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163561	32163561	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	80	617	0	ENST00000375023.3:c.5665C>G	p.Arg1889Gly	p.R1889G	ENST00000375023	NM_004557.3	1889	Cgg/Ggg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743924	40743924	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199514226		P-0048004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	49	593	0	ENST00000373198.4:c.3071C>T	p.Thr1024Met	p.T1024M	ENST00000373198	NM_133170.3	1024	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175756	112175756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	104	306	0	ENST00000257430.4:c.4466del	p.Leu1489TyrfsTer18	p.L1489Yfs*18	ENST00000257430	NM_000038.5	1489	Tta/ta																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262745	16262745	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	41	439	0	ENST00000375759.3:c.10010C>G	p.Thr3337Ser	p.T3337S	ENST00000375759	NM_015001.2	3337	aCc/aGc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482426	56482426	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	164	662	0	ENST00000267101.3:c.974G>C	p.Gly325Ala	p.G325A	ENST00000267101	NM_001982.3	325	gGa/gCa																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112915709	112915709	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	59	452	0	ENST00000351677.2:c.982A>C	p.Ile328Leu	p.I328L	ENST00000351677	NM_002834.3	328	Att/Ctt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562068	21562068	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0048004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1258	138	1319	0	ENST00000382592.4:c.1851C>G	p.Tyr617Ter	p.Y617*	ENST00000382592	NM_014572.2	617	taC/taG																																																																															
CCNE1	898	MSKCC	GRCh37	19	30303600	30303600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	48	486	0	ENST00000262643.3:c.28G>A	p.Ala10Thr	p.A10T	ENST00000262643	NM_001238.2	10	Gcg/Acg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152201847	152201847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	26	399	0	ENST00000206249.3:c.701G>T	p.Arg234Met	p.R234M	ENST00000206249	NM_000125.3	234	aGg/aTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76939074	76939074	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	65	231	0	ENST00000373344.5:c.1674T>G	p.Ser558Arg	p.S558R	ENST00000373344	NM_000489.3	558	agT/agG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0048115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	439	643	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0048115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	125	169	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73351584	73351584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	150	179	0	ENST00000377767.4:c.628C>T	p.Arg210Cys	p.R210C	ENST00000377767	NM_014953.3	210	Cgt/Tgt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81971495	81971495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767605816		P-0048115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	115	394	0	ENST00000359376.3:c.3185C>T	p.Thr1062Met	p.T1062M	ENST00000359376	NM_002661.3	1062	aCg/aTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81374383	81374383	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	184	309	0	ENST00000222390.5:c.679G>T	p.Glu227Ter	p.E227*	ENST00000222390	NM_000601.4	227	Gaa/Taa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970966	21970966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	124	587	1	ENST00000304494.5:c.392G>A	p.Arg131His	p.R131H	ENST00000304494	NM_000077.4	131	cGc/cAc																																																																															
CD79B	974	MSKCC	GRCh37	17	62007581	62007581	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1277301487		P-0048115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	570	714	1	ENST00000392795.3:c.286C>T	p.Arg96Cys	p.R96C	ENST00000392795	NM_001039933.1	96	Cgc/Tgc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119634940	119634940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	71	253	0	ENST00000316626.5:c.559C>T	p.Leu187Phe	p.L187F	ENST00000316626		187	Ctc/Ttc																																																																															
ATR	545	MSKCC	GRCh37	3	142275399	142275399	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202162034		P-0048139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	21	251	0	ENST00000350721.4:c.1904G>A	p.Arg635Gln	p.R635Q	ENST00000350721	NM_001184.3	635	cGa/cAa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967831	93967831	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	69	339	0	ENST00000369303.4:c.2096G>C	p.Gly699Ala	p.G699A	ENST00000369303	NM_004440.3	699	gGg/gCg																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46511591	46511591	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs778594341		P-0048139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	67	318	0	ENST00000262741.5:c.1186G>A	p.Val396Met	p.V396M	ENST00000262741	NM_003629.3	396	Gtg/Atg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929053	32929053	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	39	386	0	ENST00000380152.3:c.7063G>C	p.Glu2355Gln	p.E2355Q	ENST00000380152		2355	Gaa/Caa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098928	178098928	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	25	272	0	ENST00000397062.3:c.117C>G	p.Phe39Leu	p.F39L	ENST00000397062	NM_006164.4	39	ttC/ttG																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022910	31022910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	121	431	1	ENST00000375687.4:c.2395G>A	p.Asp799Asn	p.D799N	ENST00000375687	NM_015338.5	799	Gat/Aat																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72842140	72842140	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	76	240	0	ENST00000325599.8:c.1108C>A	p.Gln370Lys	p.Q370K	ENST00000325599	NM_018130.2	370	Cag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524927	187524927	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	108	506	0	ENST00000441802.2:c.10753C>T	p.Gln3585Ter	p.Q3585*	ENST00000441802	NM_005245.3	3585	Cag/Tag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86667964	86667964	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	73	258	0	ENST00000274376.6:c.1728C>A	p.Cys576Ter	p.C576*	ENST00000274376	NM_002890.2	576	tgC/tgA																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402854	20402854	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	10	18	0	ENST00000346618.3:c.391C>T	p.Pro131Ser	p.P131S	ENST00000346618	NM_001949.4	131	Ccg/Tcg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555351	106555351	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	55	305	1	ENST00000369096.4:c.2468T>A	p.Met823Lys	p.M823K	ENST00000369096	NM_001198.3	823	aTg/aAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341734	8341734	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	21	451	0	ENST00000356435.5:c.4906G>T	p.Glu1636Ter	p.E1636*	ENST00000356435		1636	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	432	637	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175136	112175136	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	78	183	0	ENST00000257430.4:c.3845C>G	p.Ser1282Ter	p.S1282*	ENST00000257430	NM_000038.5	1282	tCa/tGa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672341	86672342	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	66	253	0	ENST00000274376.6:c.2149dup	p.Ile717AsnfsTer9	p.I717Nfs*9	ENST00000274376	NM_002890.2	715	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0048170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	341	543	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0048170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	40	192	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0048170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	86	225	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	529	619	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28959044	28959044	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	95	296	0	ENST00000282397.4:c.2094C>A	p.Asn698Lys	p.N698K	ENST00000282397	NM_002019.4	698	aaC/aaA																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423519	88423519	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	304	559	0	ENST00000360948.2:c.2316C>A	p.Phe772Leu	p.F772L	ENST00000360948	NM_001012338.2	772	ttC/ttA																																																																															
SETD2	29072	MSKCC	GRCh37	3	47127717	47127717	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759310174		P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	37	439	0	ENST00000409792.3:c.5365G>A	p.Gly1789Ser	p.G1789S	ENST00000409792	NM_014159.6	1789	Ggc/Agc																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2493143	2493143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	195	661	0	ENST00000355716.4:c.583G>A	p.Gly195Arg	p.G195R	ENST00000355716	NM_003820.2	195	Ggg/Agg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435110	49435110	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	570	763	0	ENST00000301067.7:c.6443G>T	p.Gly2148Val	p.G2148V	ENST00000301067	NM_003482.3	2148	gGc/gTc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964103	28964103	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs776472661		P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	112	372	2	ENST00000282397.4:c.1799T>C	p.Met600Thr	p.M600T	ENST00000282397	NM_002019.4	600	aTg/aCg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73335619	73335619	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs764019855		P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	49	194	0	ENST00000377767.4:c.2552A>G	p.Tyr851Cys	p.Y851C	ENST00000377767	NM_014953.3	851	tAt/tGt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251019	99251019	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	191	552	0	ENST00000268035.6:c.323G>C	p.Gly108Ala	p.G108A	ENST00000268035	NM_000875.3	108	gGc/gCc																																																																															
CBFB	865	MSKCC	GRCh37	16	67100642	67100642	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	70	489	0	ENST00000412916.2:c.340A>T	p.Ile114Phe	p.I114F	ENST00000412916		114	Att/Ttt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16068448	16068448	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	16	111	0	ENST00000268712.3:c.463G>T	p.Ala155Ser	p.A155S	ENST00000268712	NM_006311.3	155	Gct/Tct																																																																															
NF1	4763	MSKCC	GRCh37	17	29653001	29653001	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	260	394	0	ENST00000358273.4:c.4999C>A	p.Pro1667Thr	p.P1667T	ENST00000358273	NM_001042492.2	1667	Cct/Act																																																																															
ALK	238	MSKCC	GRCh37	2	29754910	29754910	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	172	526	0	ENST00000389048.3:c.1025G>C	p.Ser342Thr	p.S342T	ENST00000389048	NM_004304.4	342	aGt/aCt																																																																															
EP300	2033	MSKCC	GRCh37	22	41566504	41566504	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	112	294	0	ENST00000263253.7:c.4381A>C	p.Lys1461Gln	p.K1461Q	ENST00000263253	NM_001429.3	1461	Aag/Cag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356113	66356113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	280	428	0	ENST00000273854.3:c.1384G>T	p.Val462Leu	p.V462L	ENST00000273854	NM_004439.5	462	Gta/Tta																																																																															
APC	324	MSKCC	GRCh37	5	112173376	112173377	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	124	268	0	ENST00000257430.4:c.2085_2086delinsTT	p.Gln695_Glu696delinsHisTer	p.Q695_E696delinsH*	ENST00000257430	NM_000038.5	695	caGGaa/caTTaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859414	151859414	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	128	411	0	ENST00000262189.6:c.11248del	p.Ala3750ProfsTer28	p.A3750Pfs*28	ENST00000262189	NM_170606.2	3750	Gcc/cc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518082	8518082	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	242	398	0	ENST00000356435.5:c.1309C>G	p.Gln437Glu	p.Q437E	ENST00000356435		437	Cag/Gag																																																																															
STAG2	10735	MSKCC	GRCh37	X	123185070	123185070	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	98	183	0	ENST00000218089.9:c.1116+1G>A		p.X372_splice	ENST00000218089	NM_001042749.1	372																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	308	300	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RB1	5925	MSKCC	GRCh37	13	48916747	48916747	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131690915		P-0048317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	60	307	0	ENST00000267163.4:c.277C>T	p.Gln93Ter	p.Q93*	ENST00000267163	NM_000321.2	93	Caa/Taa																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115280679	115280679	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	151	431	0	ENST00000438362.2:c.352G>C	p.Glu118Gln	p.E118Q	ENST00000438362	NM_001242891.1	118	Gaa/Caa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	112	226	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs483352697		P-0048489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	21	543	0	ENST00000269305.4:c.587G>A	p.Arg196Gln	p.R196Q	ENST00000269305	NM_001126112.2	196	cGa/cAa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176665358	176665358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	166	272	0	ENST00000439151.2:c.4042G>A	p.Glu1348Lys	p.E1348K	ENST00000439151	NM_022455.4	1348	Gag/Aag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	59	636	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578464	7578464	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	62	744	0	ENST00000269305.4:c.466del	p.Arg156AlafsTer14	p.R156Afs*14	ENST00000269305	NM_001126112.2	156	Cgc/gc																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0048621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	22	331	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																															
MGA	23269	MSKCC	GRCh37	15	42041419	42041419	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	48	416	0	ENST00000219905.7:c.5614G>T	p.Gly1872Trp	p.G1872W	ENST00000219905	NM_001164273.1	1872	Ggg/Tgg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38949913	38949913	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	49	314	0	ENST00000357387.3:c.4037C>G	p.Ser1346Cys	p.S1346C	ENST00000357387	NM_152756.3	1346	tCt/tGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0048692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	51	372	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398278	25398279	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGC			P-0048692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	186	377	0	ENST00000256078.4:c.38_40dup	p.Gly13dup	p.G13dup	ENST00000256078	NM_033360.2	13	gta/gGCGta																																																																															
PIM1	5292	MSKCC	GRCh37	6	37140915	37140915	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	68	474	0	ENST00000373509.5:c.751G>C	p.Gly251Arg	p.G251R	ENST00000373509	NM_002648.3	251	Ggc/Cgc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440904	56440904	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1458799446		P-0033575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	172	621	0	ENST00000407977.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000407977		145	Cga/Tga																																																																															
MET	4233	MSKCC	GRCh37	7	116339565	116339565	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs779093896		P-0033575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	73	331	0	ENST00000397752.3:c.427C>T	p.Arg143Ter	p.R143*	ENST00000397752	NM_000245.2	143	Cga/Tga																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624783	9624783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	84	418	0	ENST00000353224.5:c.194C>T	p.Ala65Val	p.A65V	ENST00000353224	NM_177990.2	65	gCt/gTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627933	187627933	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	141	658	1	ENST00000441802.2:c.3049T>C	p.Tyr1017His	p.Y1017H	ENST00000441802	NM_005245.3	1017	Tat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0033669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	283	800	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94068121	94068121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	87	205	0	ENST00000369303.4:c.841C>G	p.Arg281Gly	p.R281G	ENST00000369303	NM_004440.3	281	Cgt/Ggt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372044	55372044	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	57	246	0	ENST00000297316.4:c.734G>C	p.Cys245Ser	p.C245S	ENST00000297316	NM_022454.3	245	tGc/tCc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137293628	137293628	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs560113107		P-0033669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	247	1024	1	ENST00000481739.1:c.179G>T	p.Gly60Val	p.G60V	ENST00000481739	NM_002957.4	60	gGc/gTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828504	72828504	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			381	372	680	1	ENST00000268489.5:c.8077C>T	p.Arg2693Ter	p.R2693*	ENST00000268489	NM_006885.3	2693	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720869	89720869	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			220	207	405	0	ENST00000371953.3:c.1023del	p.Phe341LeufsTer3	p.F341Lfs*3	ENST00000371953	NM_000314.4	340	aaT/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420880	49420892	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGATGAGGC	CAGGGGATGAGGC	-			P-0033701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	242	569	1	ENST00000301067.7:c.14857_14869del	p.Ala4953AsnfsTer38	p.A4953Nfs*38	ENST00000301067	NM_003482.3	4953	GCCTCATCCCCTGaa/aa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909660	50909684	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTAGGTGCTGCTGCGGGAGTACAAG	CTAGGTGCTGCTGCGGGAGTACAAG	-			P-0033701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			861	135	627	0	ENST00000440232.2:c.1384-2_1406del		p.X462_splice	ENST00000440232	NM_002691.3	462																																																																																
TERT	7015	MSKCC	GRCh37	5	1280272	1280272	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0033701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1203	458	729	1	ENST00000310581.5:c.1950+1G>C		p.X650_splice	ENST00000310581	NM_198253.2	650																																																																																
NBN	4683	MSKCC	GRCh37	8	90982755	90982755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			622	485	343	0	ENST00000265433.3:c.733G>A	p.Gly245Arg	p.G245R	ENST00000265433	NM_002485.4	245	Gga/Aga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914412	32914438	+	protein_altering_variant	In_Frame_Del	DEL	ACTTGTGGGATTTTTAGCACAGCAAGT	ACTTGTGGGATTTTTAGCACAGCAAGT	CTG			P-0033701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			541	139	607	0	ENST00000380152.3:c.5920_5946delinsCTG	p.Thr1974_Ser1982delinsLeu	p.T1974_S1982delinsL	ENST00000380152		1974	ACTTGTGGGATTTTTAGCACAGCAAGT/CTG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs876660821		P-0033711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	518	543	0	ENST00000269305.4:c.537T>A	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caA																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254992	16254992	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	127	343	0	ENST00000375759.3:c.2257A>G	p.Arg753Gly	p.R753G	ENST00000375759	NM_015001.2	753	Agg/Ggg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115263258	115263258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	270	653	0	ENST00000438362.2:c.2092G>A	p.Val698Ile	p.V698I	ENST00000438362	NM_001242891.1	698	Gtc/Atc																																																																															
ATM	472	MSKCC	GRCh37	11	108175432	108175432	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1060501607		P-0033711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	518	417	0	ENST00000278616.4:c.5527C>G	p.Pro1843Ala	p.P1843A	ENST00000278616	NM_000051.3	1843	Cca/Gca																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436293	110436293	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	65	173	0	ENST00000375856.3:c.2108C>A	p.Pro703His	p.P703H	ENST00000375856	NM_003749.2	703	cCt/cAt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2131662	2131662	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	258	660	0	ENST00000219476.3:c.3677T>G	p.Met1226Arg	p.M1226R	ENST00000219476	NM_000548.3	1226	aTg/aGg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993437	72993437	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1186	237	697	0	ENST00000268489.5:c.608C>A	p.Ser203Tyr	p.S203Y	ENST00000268489	NM_006885.3	203	tCc/tAc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15365062	15365081	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAACTTTCTCAGCTGCAATC	CAACTTTCTCAGCTGCAATC	-			P-0033711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	149	572	0	ENST00000263377.2:c.2048-8_2059del		p.X683_splice	ENST00000263377	NM_058243.2	683																																																																																
CCNE1	898	MSKCC	GRCh37	19	30308324	30308324	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	197	521	0	ENST00000262643.3:c.338G>C	p.Arg113Thr	p.R113T	ENST00000262643	NM_001238.2	113	aGa/aCa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39237845	39237845	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0033711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	206	422	0	ENST00000402219.2:c.2391-1G>C		p.X797_splice	ENST00000402219	NM_005633.3	797																																																																																
NF2	4771	MSKCC	GRCh37	22	30067862	30067881	+	frameshift_variant	Frame_Shift_Del	DEL	TGAACGCACGAGGGATGAGT	TGAACGCACGAGGGATGAGT	-			P-0033711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	171	439	0	ENST00000338641.4:c.1049_1068del	p.Glu350GlyfsTer22	p.E350Gfs*22	ENST00000338641	NM_000268.3	349	gcTGAACGCACGAGGGATGAGTtg/gctg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52612543	52613155	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCTGCTGTGTTTGCCATTCAACCATACTGTCATCCTTTTGTCATTTACTTGTTCATCAAATATCTGAGGCCCTACTATGTTTCATGCACTATGATTTGAGCAGGGAATACAAGGGTGAAACCTGACAATAACACAATGAACACCGATATGTGATATATACGCTAAGGAGAAGGAAATATGTGGTGCTTTGAGAGTGTGCAACAGGGAGACTTAACCCATTCTGCAGTGGACAGGAAAGACTTCCTTTTAAGAAAGTGTCACTTCAAATTTATGCTAAAGGAGTTTACTGTATGAAGTAGGCAGGGAGATTTCTGAGCTGAAAGTTCTGTAAATAGTGGAAGAAAACAAAAGAGCCCAAAGGGATAATTTAAGGAAGAAAGTGTGGTTGGAGGGGAACATGGTGTGAGAAGAAGCTGGAGAAACTGCCAGGGGAAGGACTTTTGTCTTCATCCGAAGGGTGACTAATTTCTACTGGTTCCAAATTTCTCAGATTCAACCTCATCTTCCCTAATTCAATGACACTCACCTGCCCACACGAGGACGCACCAGGCCATGGGACTTGATGAAGACACAGTCGCCAACCTTCAGCCACATGTCATTGTAATGGAGCTG	CTCTGCTGTGTTTGCCATTCAACCATACTGTCATCCTTTTGTCATTTACTTGTTCATCAAATATCTGAGGCCCTACTATGTTTCATGCACTATGATTTGAGCAGGGAATACAAGGGTGAAACCTGACAATAACACAATGAACACCGATATGTGATATATACGCTAAGGAGAAGGAAATATGTGGTGCTTTGAGAGTGTGCAACAGGGAGACTTAACCCATTCTGCAGTGGACAGGAAAGACTTCCTTTTAAGAAAGTGTCACTTCAAATTTATGCTAAAGGAGTTTACTGTATGAAGTAGGCAGGGAGATTTCTGAGCTGAAAGTTCTGTAAATAGTGGAAGAAAACAAAAGAGCCCAAAGGGATAATTTAAGGAAGAAAGTGTGGTTGGAGGGGAACATGGTGTGAGAAGAAGCTGGAGAAACTGCCAGGGGAAGGACTTTTGTCTTCATCCGAAGGGTGACTAATTTCTACTGGTTCCAAATTTCTCAGATTCAACCTCATCTTCCCTAATTCAATGACACTCACCTGCCCACACGAGGACGCACCAGGCCATGGGACTTGATGAAGACACAGTCGCCAACCTTCAGCCACATGTCATTGTAATGGAGCTG	-			P-0033711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			4	198	0	0	ENST00000394830.3:c.3373_3458+527del		p.X1125_splice	ENST00000394830	NM_018313.4	1125																																																																																
EIF4A2	1974	MSKCC	GRCh37	3	186505488	186505599	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGTGGGCTATACCACTTAGTATAGTTCGCTACTATTTTGTGGCCTACATGACAGGTGTCAAGTTTTTTTGAATCAATTTTTAAAACATGCCATTGTGTTTCAGGCTCGCGG	CAGTGGGCTATACCACTTAGTATAGTTCGCTACTATTTTGTGGCCTACATGACAGGTGTCAAGTTTTTTTGAATCAATTTTTAAAACATGCCATTGTGTTTCAGGCTCGCGG	-			P-0033711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	132	187	0	ENST00000323963.5:c.1000-104_1007del		p.X334_splice	ENST00000323963		334																																																																																
RICTOR	253260	MSKCC	GRCh37	5	39074430	39074430	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0033711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	168	415	0	ENST00000357387.3:c.49+1G>A		p.X17_splice	ENST00000357387	NM_152756.3	17																																																																																
ROS1	6098	MSKCC	GRCh37	6	117642439	117642439	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	518	658	0	ENST00000368508.3:c.5760T>A	p.Asn1920Lys	p.N1920K	ENST00000368508	NM_002944.2	1920	aaT/aaA																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450378	50450378	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	141	413	0	ENST00000331340.3:c.562C>A	p.Leu188Ile	p.L188I	ENST00000331340	NM_006060.4	188	Ctc/Atc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509913	106509913	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0033711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	453	576	0	ENST00000359195.3:c.1907C>G	p.Ser636Ter	p.S636*	ENST00000359195	NM_002649.2	636	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576900	7576901	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0033720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	93	703	0	ENST00000269305.4:c.945_946del	p.Gln317AlafsTer19	p.Q317Afs*19	ENST00000269305	NM_001126112.2	315	tcTCcc/tccc																																																																															
APC	324	MSKCC	GRCh37	5	112173837	112173838	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0033720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	33	429	0	ENST00000257430.4:c.2547_2548del	p.Asp849GlufsTer62	p.D849Efs*62	ENST00000257430	NM_000038.5	849	gAT/g																																																																															
BLM	641	MSKCC	GRCh37	15	91293134	91293135	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0033720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	28	511	0	ENST00000355112.3:c.638_639del	p.Ser213Ter	p.S213*	ENST00000355112	NM_000057.2	212	tcCTct/tcct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0033749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	90	314	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0033749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	562	532	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445035	89445035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	115	405	0	ENST00000336596.2:c.1355G>T	p.Ser452Ile	p.S452I	ENST00000336596	NM_005233.5	452	aGc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	542	509	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	15	47	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157510914	157510914	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	54	372	0	ENST00000346085.5:c.3689G>T	p.Arg1230Ile	p.R1230I	ENST00000346085	NM_020732.3	1230	aGa/aTa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50920518	50920518	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	46	463	0	ENST00000440232.2:c.3210C>G	p.Ile1070Met	p.I1070M	ENST00000440232	NM_002691.3	1070	atC/atG																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372049	55372049	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1254366651		P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	51	281	0	ENST00000297316.4:c.739G>A	p.Ala247Thr	p.A247T	ENST00000297316	NM_022454.3	247	Gcg/Acg																																																																															
CD79B	974	MSKCC	GRCh37	17	62009619	62009619	+	start_lost	Translation_Start_Site	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	140	486	0	ENST00000392795.3:c.3G>T	p.Met1?	p.M1?	ENST00000392795	NM_001039933.1	1	atG/atT																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612870	228612870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	123	454	0	ENST00000366696.1:c.157C>T	p.Arg53Cys	p.R53C	ENST00000366696	NM_003493.2	53	Cgc/Tgc																																																																															
AR	367	MSKCC	GRCh37	X	66863241	66863241	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs750677165		P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	100	456	0	ENST00000374690.3:c.1760C>A	p.Ala587Asp	p.A587D	ENST00000374690	NM_000044.3	587	gCc/gAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29687607	29687607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	177	539	0	ENST00000358273.4:c.8263C>T	p.Leu2755Phe	p.L2755F	ENST00000358273	NM_001042492.2	2755	Ctc/Ttc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789643	3789643	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	82	384	1	ENST00000262367.5:c.4216G>T	p.Asp1406Tyr	p.D1406Y	ENST00000262367	NM_004380.2	1406	Gat/Tat																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412500	63412500	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	68	518	0	ENST00000330258.3:c.667G>T	p.Ala223Ser	p.A223S	ENST00000330258	NM_152424.3	223	Gcc/Tcc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78426050	78426050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	150	463	0	ENST00000370768.2:c.1475G>T	p.Gly492Val	p.G492V	ENST00000370768	NM_003902.3	492	gGa/gTa																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115273043	115273043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	79	440	0	ENST00000438362.2:c.1330G>T	p.Asp444Tyr	p.D444Y	ENST00000438362	NM_001242891.1	444	Gat/Tat																																																																															
NUF2	83540	MSKCC	GRCh37	1	163297320	163297320	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs142683655		P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	114	439	1	ENST00000271452.3:c.166G>T	p.Val56Leu	p.V56L	ENST00000271452	NM_145697.2	56	Gta/Tta																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981145	201981145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	171	589	1	ENST00000359651.3:c.224G>T	p.Trp75Leu	p.W75L	ENST00000359651		75	tGg/tTg																																																																															
PARP1	142	MSKCC	GRCh37	1	226578289	226578289	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	137	463	0	ENST00000366794.5:c.439G>T	p.Glu147Ter	p.E147*	ENST00000366794	NM_001618.3	147	Gag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108115582	108115582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	67	430	0	ENST00000278616.4:c.730G>A	p.Ala244Thr	p.A244T	ENST00000278616	NM_000051.3	244	Gct/Act																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245271	46245271	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	123	377	0	ENST00000334344.6:c.3366del	p.Gln1124SerfsTer32	p.Q1124Sfs*32	ENST00000334344	NM_152641.2	1122	gTt/gt																																																																															
RAB35	11021	MSKCC	GRCh37	12	120541629	120541629	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1416625402		P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	35	393	1	ENST00000229340.5:c.227+1G>A		p.X76_splice	ENST00000229340	NM_006861.6	76																																																																																
IRS2	8660	MSKCC	GRCh37	13	110434437	110434437	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	65	459	0	ENST00000375856.3:c.3964A>T	p.Ser1322Cys	p.S1322C	ENST00000375856	NM_003749.2	1322	Agc/Tgc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434482	110434482	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	50	399	0	ENST00000375856.3:c.3919G>T	p.Gly1307Trp	p.G1307W	ENST00000375856	NM_003749.2	1307	Ggg/Tgg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30105602	30105602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	96	732	0	ENST00000331968.5:c.1084G>A	p.Glu362Lys	p.E362K	ENST00000331968	NM_002742.2	362	Gaa/Aaa																																																																															
B2M	567	MSKCC	GRCh37	15	45003788	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	123	496	0	ENST00000558401.1:c.45_46del	p.Ser16TrpfsTer40	p.S16Wfs*40	ENST00000558401	NM_004048.2	15	cTT/c																																																																															
CDH1	999	MSKCC	GRCh37	16	68844199	68844199	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	151	521	0	ENST00000261769.5:c.787A>T	p.Thr263Ser	p.T263S	ENST00000261769	NM_004360.3	263	Acc/Tcc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923730	72923730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	64	533	0	ENST00000268489.5:c.3348G>T	p.Glu1116Asp	p.E1116D	ENST00000268489	NM_006885.3	1116	gaG/gaT																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428357	33428357	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	171	537	0	ENST00000335858.7:c.430G>C	p.Asp144His	p.D144H	ENST00000335858	NM_133629.2	144	Gac/Cac																																																																															
BRCA1	672	MSKCC	GRCh37	17	41209073	41209073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	159	514	1	ENST00000357654.3:c.5273G>A	p.Arg1758Lys	p.R1758K	ENST00000357654	NM_007294.3	1758	aGa/aAa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435252	56435252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	192	549	0	ENST00000407977.2:c.1885G>T	p.Ala629Ser	p.A629S	ENST00000407977		629	Gcc/Tcc																																																																															
YES1	7525	MSKCC	GRCh37	18	742925	742925	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1388595429		P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	30	342	0	ENST00000314574.4:c.1053G>A	p.Met351Ile	p.M351I	ENST00000314574	NM_005433.3	351	atG/atA																																																																															
MALT1	10892	MSKCC	GRCh37	18	56415048	56415048	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	111	357	0	ENST00000348428.3:c.2449G>C	p.Asp817His	p.D817H	ENST00000348428	NM_006785.3	817	Gac/Cac																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214706	5214706	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1457749790		P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	270	522	1	ENST00000357368.4:c.4360G>T	p.Gly1454Cys	p.G1454C	ENST00000357368	NM_002850.3	1454	Ggc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5215604	5215604	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	193	480	0	ENST00000357368.4:c.4099A>G	p.Met1367Val	p.M1367V	ENST00000357368	NM_002850.3	1367	Atg/Gtg																																																																															
CARM1	10498	MSKCC	GRCh37	19	10982542	10982542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	66	105	0	ENST00000327064.4:c.164C>T	p.Ala55Val	p.A55V	ENST00000327064	NM_199141.1	55	gCg/gTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144471	11144471	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	270	504	0	ENST00000344626.4:c.3803G>C	p.Ser1268Thr	p.S1268T	ENST00000344626	NM_003072.3	1268	aGt/aCt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366933	15366933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	288	661	0	ENST00000263377.2:c.1693G>T	p.Ala565Ser	p.A565S	ENST00000263377	NM_058243.2	565	Gcc/Tcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222928	36222928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	305	726	1	ENST00000222270.7:c.5557C>T	p.Pro1853Ser	p.P1853S	ENST00000222270	NM_014727.1	1853	Cct/Tct																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47601021	47601021	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	84	508	0	ENST00000263735.4:c.259G>T	p.Ala87Ser	p.A87S	ENST00000263735	NM_002354.2	87	Gcc/Tcc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659821	227659821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	130	332	0	ENST00000305123.5:c.3634G>A	p.Gly1212Ser	p.G1212S	ENST00000305123	NM_005544.2	1212	Ggc/Agc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560966	9560966	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	124	504	1	ENST00000353224.5:c.816C>A	p.Tyr272Ter	p.Y272*	ENST00000353224	NM_177990.2	272	taC/taA																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30309898	30309898	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	63	526	0	ENST00000307677.4:c.124G>C	p.Glu42Gln	p.E42Q	ENST00000307677	NM_138578.1	42	Gaa/Caa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37050305	37050305	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs748417604		P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	34	251	0	ENST00000231790.2:c.454G>T	p.Val152Leu	p.V152L	ENST00000231790	NM_000249.3	152	Gtg/Ttg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71064709	71064709	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	71	334	0	ENST00000318789.4:c.965C>A	p.Ser322Ter	p.S322*	ENST00000318789	NM_032682.5	322	tCa/tAa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134825440	134825440	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	51	424	2	ENST00000398015.3:c.956G>T	p.Cys319Phe	p.C319F	ENST00000398015	NM_004441.4	319	tGc/tTc																																																																															
ATR	545	MSKCC	GRCh37	3	142226945	142226945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	106	325	0	ENST00000350721.4:c.4859C>T	p.Thr1620Ile	p.T1620I	ENST00000350721	NM_001184.3	1620	aCt/aTt																																																																															
KDR	3791	MSKCC	GRCh37	4	55962504	55962504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	125	422	0	ENST00000263923.4:c.2620G>T	p.Ala874Ser	p.A874S	ENST00000263923	NM_002253.2	874	Gca/Tca																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143326395	143326395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	50	415	0	ENST00000262992.4:c.219G>T	p.Gln73His	p.Q73H	ENST00000262992	NM_001101669.1	73	caG/caT																																																																															
TERT	7015	MSKCC	GRCh37	5	1264591	1264592	+	missense_variant	Missense_Mutation	DNP	GC	GC	AG			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	70	530	1	ENST00000310581.5:c.2770_2771delinsCT	p.Ala924Leu	p.A924L	ENST00000310581	NM_198253.2	924	GCc/CTc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31435899	31435899	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	139	362	0	ENST00000344624.3:c.3015G>C	p.Gln1005His	p.Q1005H	ENST00000344624		1005	caG/caC																																																																															
IL7R	3575	MSKCC	GRCh37	5	35861056	35861056	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	147	363	0	ENST00000303115.3:c.185C>A	p.Pro62Gln	p.P62Q	ENST00000303115	NM_002185.3	62	cCa/cAa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871289	35871289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	91	270	0	ENST00000303115.3:c.511C>A	p.Gln171Lys	p.Q171K	ENST00000303115	NM_002185.3	171	Cag/Aag																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754357	57754357	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	137	308	0	ENST00000274289.3:c.496-2A>T		p.X166_splice	ENST00000274289	NM_006622.3	166																																																																																
FLT4	2324	MSKCC	GRCh37	5	180046043	180046043	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	32	106	1	ENST00000261937.6:c.2828G>T	p.Arg943Leu	p.R943L	ENST00000261937	NM_182925.4	943	cGg/cTg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673738	30673738	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1339693761		P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	95	441	0	ENST00000376406.3:c.3222C>G	p.Ile1074Met	p.I1074M	ENST00000376406	NM_014641.2	1074	atC/atG																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168999	32168999	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	101	656	2	ENST00000375023.3:c.4034C>A	p.Ala1345Asp	p.A1345D	ENST00000375023	NM_004557.3	1345	gCc/gAc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287964	33287964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	59	432	0	ENST00000374542.5:c.1289C>T	p.Ala430Val	p.A430V	ENST00000374542	NM_001141970.1	430	gCc/gTc																																																																															
HGF	3082	MSKCC	GRCh37	7	81336627	81336627	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	101	245	0	ENST00000222390.5:c.1595C>A	p.Ala532Glu	p.A532E	ENST00000222390	NM_000601.4	532	gCa/gAa																																																																															
HGF	3082	MSKCC	GRCh37	7	81372738	81372739	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	116	344	2	ENST00000222390.5:c.795_796delinsTT	p.Gln266Ter	p.Q266*	ENST00000222390	NM_000601.4	265	ggCCag/ggTTag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508430	106508430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	65	229	0	ENST00000359195.3:c.424C>G	p.Pro142Ala	p.P142A	ENST00000359195	NM_002649.2	142	Ccg/Gcg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931877	68931877	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	60	463	0	ENST00000288368.4:c.307C>G	p.Gln103Glu	p.Q103E	ENST00000288368	NM_024870.2	103	Caa/Gaa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864194	117864194	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	59	429	0	ENST00000297338.2:c.1463T>G	p.Val488Gly	p.V488G	ENST00000297338	NM_006265.2	488	gTg/gGg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486044	8486044	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	134	537	0	ENST00000356435.5:c.2773C>A	p.Leu925Ile	p.L925I	ENST00000356435		925	Ctt/Att																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518175	8518179	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTG	CGCTG	TGCT			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	104	433	1	ENST00000356435.5:c.1212_1216delinsAGCA	p.Ser405AlafsTer5	p.S405Afs*5	ENST00000356435		404	ccCAGCGaa/ccAGCAaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	55	147	0	ENST00000304494.5:c.58G>A	p.Ala20Thr	p.A20T	ENST00000304494	NM_000077.4	20	Gcg/Acg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87339241	87339241	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	63	488	0	ENST00000277120.3:c.823G>T	p.Asp275Tyr	p.D275Y	ENST00000277120		275	Gat/Tat																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781208	135781208	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	59	539	0	ENST00000298552.3:c.1757G>C	p.Cys586Ser	p.C586S	ENST00000298552	NM_001162426.1	586	tGt/tCt																																																																															
MED12	9968	MSKCC	GRCh37	X	70356169	70356169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	152	671	0	ENST00000374080.3:c.5064G>T	p.Trp1688Cys	p.W1688C	ENST00000374080		1688	tgG/tgT																																																																															
BTK	695	MSKCC	GRCh37	X	100604929	100604929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	26	393	0	ENST00000308731.7:c.1924C>A	p.Pro642Thr	p.P642T	ENST00000308731	NM_000061.2	642	Ccc/Acc																																																																															
XIAP	331	MSKCC	GRCh37	X	123019892	123019892	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	94	601	0	ENST00000355640.3:c.380T>A	p.Phe127Tyr	p.F127Y	ENST00000355640		127	tTt/tAt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0033812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	178	614	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0033812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	89	228	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578412	7578412	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519747		P-0033812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	221	576	0	ENST00000269305.4:c.518T>C	p.Val173Ala	p.V173A	ENST00000269305	NM_001126112.2	173	gTg/gCg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120181	70120182	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0033812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	181	378	0	ENST00000245479.2:c.1185_1186dup	p.His396ArgfsTer8	p.H396Rfs*8	ENST00000245479	NM_000346.3	395	acg/aCGcg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735458	40735458	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1243407933		P-0033812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	397	581	0	ENST00000373198.4:c.3415C>T	p.Arg1139Trp	p.R1139W	ENST00000373198	NM_133170.3	1139	Cgg/Tgg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	212	611	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																															
BCOR	54880	MSKCC	GRCh37	X	39914723	39914723	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	162	413	1	ENST00000378444.4:c.4639C>T	p.Arg1547Ter	p.R1547*	ENST00000378444	NM_001123385.1	1547	Cga/Tga																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197353	26197353	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0033812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	52	318	0	ENST00000356476.2:c.126C>G	p.Tyr42Ter	p.Y42*	ENST00000356476		42	taC/taG																																																																															
FLCN	201163	MSKCC	GRCh37	17	17118377	17118380	+	frameshift_variant	Frame_Shift_Del	DEL	TCAA	TCAA	-			P-0033812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	185	625	0	ENST00000285071.4:c.1457_1460del	p.Ile486LysfsTer4	p.I486Kfs*4	ENST00000285071	NM_144997.5	486	aTTGAa/aa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41420107	41420107	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0033812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	140	221	1	ENST00000373198.4:c.215-1G>A		p.X72_splice	ENST00000373198	NM_133170.3	72																																																																																
INPP4B	8821	MSKCC	GRCh37	4	143045766	143045766	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	45	349	0	ENST00000262992.4:c.1868G>C	p.Arg623Thr	p.R623T	ENST00000262992	NM_001101669.1	623	aGa/aCa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509870	106509870	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	181	502	0	ENST00000359195.3:c.1864T>G	p.Leu622Val	p.L622V	ENST00000359195	NM_002649.2	622	Ttg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579349	7579349	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	474	610	0	ENST00000269305.4:c.338T>C	p.Phe113Ser	p.F113S	ENST00000269305	NM_001126112.2	113	tTc/tCc																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51436086	51436086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	51	270	0	ENST00000262662.1:c.46G>A	p.Gly16Arg	p.G16R	ENST00000262662		16	Ggg/Agg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50826520	50826520	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	104	335	0	ENST00000398568.2:c.2245C>G	p.Leu749Val	p.L749V	ENST00000398568	NM_001042412.1	749	Ctg/Gtg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243801005	243801005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	130	482	0	ENST00000263826.5:c.469G>A	p.Gly157Ser	p.G157S	ENST00000263826	NM_005465.4	157	Ggc/Agc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749149	43749150	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0033818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	219	737	0	ENST00000382044.4:c.1656_1657del	p.Thr553GlyfsTer10	p.T553Gfs*10	ENST00000382044	NM_001141980.1	552	gaTAcg/gacg																																																																															
ERF	2077	MSKCC	GRCh37	19	42754047	42754047	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	194	611	0	ENST00000222329.4:c.305T>A	p.Phe102Tyr	p.F102Y	ENST00000222329	NM_006494.2	102	tTc/tAc																																																																															
ALK	238	MSKCC	GRCh37	2	29456523	29456523	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	170	579	0	ENST00000389048.3:c.2395A>C	p.Asn799His	p.N799H	ENST00000389048	NM_004304.4	799	Aat/Cat																																																																															
PRDM1	639	MSKCC	GRCh37	6	106554955	106554955	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs750519043		P-0033818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	79	376	0	ENST00000369096.4:c.2072A>G	p.Gln691Arg	p.Q691R	ENST00000369096	NM_001198.3	691	cAg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	2585	411	2	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
HGF	3082	MSKCC	GRCh37	7	81372744	81372744	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1168082930		P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	34	324	1	ENST00000222390.5:c.790G>A	p.Asp264Asn	p.D264N	ENST00000222390	NM_000601.4	264	Gat/Aat																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271969	18271969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1418268495		P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	49	291	0	ENST00000222254.8:c.572C>T	p.Ser191Leu	p.S191L	ENST00000222254	NM_005027.3	191	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs876659802		P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	157	675	2	ENST00000269305.4:c.833C>A	p.Pro278His	p.P278H	ENST00000269305	NM_001126112.2	278	cCt/cAt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81957138	81957138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	131	426	0	ENST00000359376.3:c.2356G>A	p.Asp786Asn	p.D786N	ENST00000359376	NM_002661.3	786	Gat/Aat																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445091	89445091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	50	321	0	ENST00000336596.2:c.1411G>A	p.Glu471Lys	p.E471K	ENST00000336596	NM_005233.5	471	Gag/Aag																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67198897	67198897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	61	425	0	ENST00000312629.5:c.368T>C	p.Leu123Pro	p.L123P	ENST00000312629	NM_003952.2	123	cTa/cCa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569984	95569984	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	66	517	0	ENST00000343455.3:c.3749C>A	p.Ser1250Tyr	p.S1250Y	ENST00000343455	NM_177438.2	1250	tCt/tAt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223514	2223514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	87	608	1	ENST00000326181.6:c.1045G>A	p.Glu349Lys	p.E349K	ENST00000326181	NM_032271.2	349	Gag/Aag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641289	3641289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	76	549	0	ENST00000294008.3:c.2350C>T	p.His784Tyr	p.H784Y	ENST00000294008	NM_032444.2	784	Cac/Tac																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367906	15367906	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	113	664	1	ENST00000263377.2:c.1420C>A	p.Pro474Thr	p.P474T	ENST00000263377	NM_058243.2	474	Ccc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224552	36224552	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1421	76	800	1	ENST00000222270.7:c.7014T>A	p.Asp2338Glu	p.D2338E	ENST00000222270	NM_014727.1	2338	gaT/gaA																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664901	138664901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	22	141	0	ENST00000330315.3:c.664G>A	p.Ala222Thr	p.A222T	ENST00000330315	NM_023067.3	222	Gca/Aca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27102121	27102121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	347	572	0	ENST00000324856.7:c.5047G>A	p.Glu1683Lys	p.E1683K	ENST00000324856	NM_006015.4	1683	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89725046	89725054	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GAAGCTGTA	GAAGCTGTA	-			P-0033848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	58	205	0	ENST00000371953.3:c.1029_1037del	p.Lys344_Tyr346del	p.K344_Y346del	ENST00000371953	NM_000314.4	343	gtGAAGCTGTAc/gtc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104357006	104357006	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149016373		P-0033848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	162	465	1	ENST00000369902.3:c.866G>A	p.Arg289Gln	p.R289Q	ENST00000369902	NM_016169.3	289	cGg/cAg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95566153	95566153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	198	472	0	ENST00000343455.3:c.4170C>A	p.Asp1390Glu	p.D1390E	ENST00000343455	NM_177438.2	1390	gaC/gaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0033848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	519	740	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750390	41750390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	135	378	0	ENST00000226382.2:c.238G>C	p.Ala80Pro	p.A80P	ENST00000226382	NM_003924.3	80	Gca/Cca																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004918	150004918	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	262	541	0	ENST00000253339.5:c.1307C>A	p.Ser436Ter	p.S436*	ENST00000253339		436	tCa/tAa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970951	21970973	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCCCGCAGCCGCGCGCAGGTA	CCCCCCGCAGCCGCGCGCAGGTA	-			P-0033848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	568	589	0	ENST00000304494.5:c.385_407del	p.Tyr129HisfsTer5	p.Y129Hfs*5	ENST00000304494	NM_000077.4	129	TACCTGCGCGCGGCTGCGGGGGGc/c																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139815613	139815613	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs374009362		P-0033848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	168	609	0	ENST00000247668.2:c.1084G>T	p.Ala362Ser	p.A362S	ENST00000247668	NM_021138.3	362	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540652		P-0033884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	153	572	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578188	7578188	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs786201592		P-0033884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	349	566	0	ENST00000269305.4:c.661G>T	p.Glu221Ter	p.E221*	ENST00000269305	NM_001126112.2	221	Gag/Tag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46205211	46205211	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0033884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	445	343	0	ENST00000334344.6:c.295A>T	p.Lys99Ter	p.K99*	ENST00000334344	NM_152641.2	99	Aag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602284	10602302	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAGCCGCCGACGGCATA	GGGAGCCGCCGACGGCATA	-			P-0033884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	339	614	0	ENST00000171111.5:c.1276_1294del	p.Tyr426ThrfsTer26	p.Y426Tfs*26	ENST00000171111	NM_203500.1	426	TATGCCGTCGGCGGCTCCCac/ac																																																																															
AKT2	208	MSKCC	GRCh37	19	40744858	40744865	+	frameshift_variant	Frame_Shift_Del	DEL	GTCTGGAA	GTCTGGAA	CTCT			P-0033884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	296	530	2	ENST00000392038.2:c.655_662delinsAGAG	p.Phe219ArgfsTer9	p.F219Rfs*9	ENST00000392038	NM_001626.4	219	TTCCAGACc/AGAGc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868196	45868196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	347	663	0	ENST00000391945.4:c.494G>T	p.Gly165Val	p.G165V	ENST00000391945	NM_000400.3	165	gGg/gTg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89456429	89456429	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1257548456		P-0033884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	221	325	0	ENST00000336596.2:c.1605C>G	p.Ile535Met	p.I535M	ENST00000336596	NM_005233.5	535	atC/atG																																																																															
ARAF	369	MSKCC	GRCh37	X	47424216	47424216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	192	472	0	ENST00000377045.4:c.221G>T	p.Trp74Leu	p.W74L	ENST00000377045	NM_001654.4	74	tGg/tTg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123179176	123179176	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	102	517	0	ENST00000218089.9:c.625G>T	p.Asp209Tyr	p.D209Y	ENST00000218089	NM_001042749.1	209	Gac/Tac																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968233	134968233	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753895808		P-0033924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	127	566	0	ENST00000398015.3:c.2746G>A	p.Val916Met	p.V916M	ENST00000398015	NM_004441.4	916	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112174253	112174253	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	103	423	1	ENST00000257430.4:c.2962G>T	p.Glu988Ter	p.E988*	ENST00000257430	NM_000038.5	988	Gaa/Taa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608544	28608544	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs763688464		P-0033924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	307	507	0	ENST00000241453.7:c.1598G>A	p.Gly533Asp	p.G533D	ENST00000241453	NM_004119.2	533	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	189	656	0	ENST00000269305.4:c.659del	p.Tyr220LeufsTer27	p.Y220Lfs*27	ENST00000269305	NM_001126112.2	220	tAt/tt																																																																															
MST1	4485	MSKCC	GRCh37	3	49723144	49723148	+	frameshift_variant	Frame_Shift_Del	DEL	CGGTT	CGGTT	-			P-0033924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	146	578	0	ENST00000449682.2:c.1268_1272del	p.Glu423AlafsTer16	p.E423Afs*16	ENST00000449682	NM_020998.3	423	gAACCG/g																																																																															
APC	324	MSKCC	GRCh37	5	112176427	112176427	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	67	304	0	ENST00000257430.4:c.5136A>C	p.Glu1712Asp	p.E1712D	ENST00000257430	NM_000038.5	1712	gaA/gaC																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741986	145741986	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1189	149	610	0	ENST00000428558.2:c.517C>G	p.Gln173Glu	p.Q173E	ENST00000428558	NM_004260.3	173	Cag/Gag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	136	599	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0033937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	140	744	1	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573586	48573586	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	20	369	0	ENST00000342988.3:c.170T>C	p.Leu57Ser	p.L57S	ENST00000342988	NM_005359.5	57	tTa/tCa																																																																															
PGR	5241	MSKCC	GRCh37	11	100999062	100999062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	22	631	0	ENST00000325455.5:c.740C>T	p.Ala247Val	p.A247V	ENST00000325455	NM_001202474.3	247	gCg/gTg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21565492	21565492	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	58	799	1	ENST00000382592.4:c.394G>T	p.Ala132Ser	p.A132S	ENST00000382592	NM_014572.2	132	Gcc/Tcc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89851354	89851354	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1438828232		P-0033937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	95	579	2	ENST00000389301.3:c.1378C>T	p.Arg460Ter	p.R460*	ENST00000389301	NM_000135.2	460	Cga/Tga																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626792	14626793	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0033937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	55	664	0	ENST00000254322.2:c.981_982dup	p.Gln328ProfsTer79	p.Q328Pfs*79	ENST00000254322	NM_006145.1	328	cag/cCCag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039413	47039413	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	53	348	0	ENST00000329236.7:c.805G>C	p.Ala269Pro	p.A269P	ENST00000329236	NM_001204466.1	269	Gcc/Ccc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	142	484	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0034063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	99	277	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866359	37866359	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	27	488	0	ENST00000269571.5:c.664G>T	p.Gly222Cys	p.G222C	ENST00000269571		222	Ggt/Tgt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640660	3640660	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	87	621	0	ENST00000294008.3:c.2979G>T	p.Glu993Asp	p.E993D	ENST00000294008	NM_032444.2	993	gaG/gaT																																																																															
ALK	238	MSKCC	GRCh37	2	30143479	30143479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs542229113		P-0034063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	21	224	0	ENST00000389048.3:c.47C>T	p.Thr16Met	p.T16M	ENST00000389048	NM_004304.4	16	aCg/aTg																																																																															
TP63	8626	MSKCC	GRCh37	3	189612188	189612188	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774550896		P-0034063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	33	400	0	ENST00000264731.3:c.1940G>A	p.Arg647His	p.R647H	ENST00000264731	NM_003722.4	647	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245512	153245512	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	100	289	0	ENST00000281708.4:c.1679A>T	p.Asp560Val	p.D560V	ENST00000281708	NM_033632.3	560	gAt/gTt																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031930	26031930	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	65	225	0	ENST00000244661.2:c.359T>C	p.Ile120Thr	p.I120T	ENST00000244661	NM_003537.3	120	aTt/aCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	193	539	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249510	153249510	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1157879635		P-0034092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	273	673	0	ENST00000281708.4:c.1268G>T	p.Gly423Val	p.G423V	ENST00000281708	NM_033632.3	423	gGa/gTa																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0034092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	141	328	0	ENST00000257430.4:c.4391_4394del	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863224683		P-0034092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	543	945	0	ENST00000269305.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000269305	NM_001126112.2	130	Ctc/Ttc																																																																															
APC	324	MSKCC	GRCh37	5	112164565	112164566	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	65	260	0	ENST00000257430.4:c.1643dup	p.Leu548PhefsTer12	p.L548Ffs*12	ENST00000257430	NM_000038.5	547	gtt/gTtt																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370254	40370254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750053820		P-0034092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	194	763	1	ENST00000293328.3:c.1084G>A	p.Val362Met	p.V362M	ENST00000293328	NM_012448.3	362	Gtg/Atg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411832	63411832	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0034092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	455	559	0	ENST00000330258.3:c.1335T>G	p.Tyr445Ter	p.Y445*	ENST00000330258	NM_152424.3	445	taT/taG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0034144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	92	546	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242478	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAG	AATTAAGAGAAG	CAC	rs727503015		P-0034144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	78	343	0	ENST00000275493.2:c.2237_2248delinsCAC	p.Glu746_Ala750delinsAlaPro	p.E746_A750delinsAP	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGca/gCACca																																																																															
RET	5979	MSKCC	GRCh37	10	43610038	43610038	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1357060080		P-0034144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	27	683	0	ENST00000355710.3:c.1990G>T	p.Ala664Ser	p.A664S	ENST00000355710	NM_020975.4	664	Gcc/Tcc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31372646	31372646	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs775213720		P-0034144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	23	430	0	ENST00000328111.2:c.287C>G	p.Thr96Ser	p.T96S	ENST00000328111	NM_006892.3	96	aCt/aGt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743924	40743924	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199514226		P-0034236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	53	709	0	ENST00000373198.4:c.3071C>T	p.Thr1024Met	p.T1024M	ENST00000373198	NM_133170.3	1024	aCg/aTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115903	8115904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0034236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	163	599	0	ENST00000346208.3:c.1251dup	p.Thr418HisfsTer89	p.T418Hfs*89	ENST00000346208		417	acc/aCcc																																																																															
TET2	54790	MSKCC	GRCh37	4	106196879	106196881	+	frameshift_variant	Frame_Shift_Del	DEL	TCT	TCT	CC			P-0034296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	59	349	0	ENST00000380013.4:c.5212_5214delinsCC	p.Ser1738ProfsTer7	p.S1738Pfs*7	ENST00000380013	NM_001127208.2	1738	TCT/CC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876658468		P-0034298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	173	809	0	ENST00000269305.4:c.577C>G	p.His193Asp	p.H193D	ENST00000269305	NM_001126112.2	193	Cat/Gat																																																																															
MTOR	2475	MSKCC	GRCh37	1	11168283	11168283	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	185	886	0	ENST00000361445.4:c.7589A>G	p.Lys2530Arg	p.K2530R	ENST00000361445	NM_004958.3	2530	aAa/aGa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28592644	28592644	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	23	640	0	ENST00000241453.7:c.2501G>C	p.Arg834Pro	p.R834P	ENST00000241453	NM_004119.2	834	cGa/cCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1202793339		P-0034374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	401	392	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89391103	89391103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	92	415	0	ENST00000336596.2:c.1169C>A	p.Thr390Asn	p.T390N	ENST00000336596	NM_005233.5	390	aCc/aAc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647949	3647949	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	150	526	0	ENST00000294008.3:c.1215G>C	p.Lys405Asn	p.K405N	ENST00000294008	NM_032444.2	405	aaG/aaC																																																																															
ROS1	6098	MSKCC	GRCh37	6	117725482	117725482	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	99	397	0	ENST00000368508.3:c.399G>C	p.Trp133Cys	p.W133C	ENST00000368508	NM_002944.2	133	tgG/tgC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0034385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	232	431	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	366	633	2	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct																																																																															
STK11	6794	MSKCC	GRCh37	19	1220711	1220714	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CACC	CACC	-			P-0034385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	192	529	0	ENST00000326873.7:c.730_733del	p.Thr244SerfsTer42	p.T244Sfs*42	ENST00000326873	NM_000455.4	243	gtCACC/gt																																																																															
BARD1	580	MSKCC	GRCh37	2	215593455	215593455	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881425		P-0034385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	90	286	0	ENST00000260947.4:c.2279C>T	p.Ser760Leu	p.S760L	ENST00000260947	NM_000465.2	760	tCg/tTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209525	98209525	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771238114		P-0034391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	67	591	0	ENST00000331920.6:c.4013G>A	p.Arg1338His	p.R1338H	ENST00000331920	NM_000264.3	1338	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576910	7576981	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCC	GGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCC	-			P-0034391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	191	620	0	ENST00000269305.4:c.919+38_936del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
EPHA7	2045	MSKCC	GRCh37	6	94120330	94120330	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1465849290		P-0034391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	40	389	0	ENST00000369303.4:c.721G>A	p.Glu241Lys	p.E241K	ENST00000369303	NM_004440.3	241	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	172	593	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	441	765	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
HGF	3082	MSKCC	GRCh37	7	81381436	81381436	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0034394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	112	332	0	ENST00000222390.5:c.625G>A	p.Val209Ile	p.V209I	ENST00000222390	NM_000601.4	209	Gtt/Att																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0034476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	181	588	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260094	16260138	+	inframe_deletion	In_Frame_Del	DEL	CATTGAAAGTGACCCGGTGACCCCACCCAGCGATCCAAGCATCCC	CATTGAAAGTGACCCGGTGACCCCACCCAGCGATCCAAGCATCCC	-			P-0034476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	53	531	0	ENST00000375759.3:c.7362_7406del	p.Glu2455_Ile2469del	p.E2455_I2469del	ENST00000375759	NM_015001.2	2453	atCATTGAAAGTGACCCGGTGACCCCACCCAGCGATCCAAGCATCCCc/atc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797522	45797522	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0034476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	75	615	0	ENST00000372115.3:c.956-1G>A		p.X319_splice	ENST00000372115	NM_001048171.1	319																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3820793	3820820	+	frameshift_variant	Frame_Shift_Del	DEL	AGTGGGAGCTGCTGGCTGGGGAGGAGTC	AGTGGGAGCTGCTGGCTGGGGAGGAGTC	-			P-0034476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1354	76	937	0	ENST00000262367.5:c.2631_2658del	p.Met877IlefsTer41	p.M877Ifs*41	ENST00000262367	NM_004380.2	877	atGACTCCTCCCCAGCCAGCAGCTCCCACT/at																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152179	11152179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	53	503	0	ENST00000344626.4:c.4367C>T	p.Pro1456Leu	p.P1456L	ENST00000344626	NM_003072.3	1456	cCc/cTc																																																																															
CENPA	1058	MSKCC	GRCh37	2	27015107	27015107	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0034476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	36	271	2	ENST00000335756.4:c.209T>C	p.Leu70Pro	p.L70P	ENST00000335756	NM_001809.3	70	cTg/cCg																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402489	20402489	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	66	493	0	ENST00000346618.3:c.26T>C	p.Leu9Pro	p.L9P	ENST00000346618	NM_001949.4	9	cTg/cCg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68972921	68972921	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	131	387	0	ENST00000288368.4:c.1246G>T	p.Val416Leu	p.V416L	ENST00000288368	NM_024870.2	416	Gtg/Ttg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426465	47426465	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs923151586		P-0034476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	77	568	0	ENST00000377045.4:c.808C>G	p.Pro270Ala	p.P270A	ENST00000377045	NM_001654.4	270	Cca/Gca																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11136173	11136173	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	115	519	0	ENST00000344626.4:c.3157C>T	p.Gln1053Ter	p.Q1053*	ENST00000344626	NM_003072.3	1053	Cag/Tag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786767	3786767	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs587783495		P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	44	501	0	ENST00000262367.5:c.4444T>G	p.Tyr1482Asp	p.Y1482D	ENST00000262367	NM_004380.2	1482	Tac/Gac																																																																															
RHOA	387	MSKCC	GRCh37	3	49397719	49397719	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	71	565	0	ENST00000418115.1:c.505G>T	p.Glu169Ter	p.E169*	ENST00000418115	NM_001664.2	169	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	113	544	0	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																																
FAT1	2195	MSKCC	GRCh37	4	187539267	187539267	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202043464		P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	38	422	0	ENST00000441802.2:c.8473G>A	p.Gly2825Arg	p.G2825R	ENST00000441802	NM_005245.3	2825	Gga/Aga																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229688	98229688	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs547954117		P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	20	214	0	ENST00000331920.6:c.2270T>C	p.Phe757Ser	p.F757S	ENST00000331920	NM_000264.3	757	tTt/tCt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257167	16257167	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	49	475	0	ENST00000375759.3:c.4432A>G	p.Lys1478Glu	p.K1478E	ENST00000375759	NM_015001.2	1478	Aaa/Gaa																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46511657	46511657	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	134	550	0	ENST00000262741.5:c.1120G>C	p.Gly374Arg	p.G374R	ENST00000262741	NM_003629.3	374	Ggg/Cgg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332984	70332984	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	129	654	2	ENST00000373644.4:c.889T>C	p.Tyr297His	p.Y297H	ENST00000373644	NM_030625.2	297	Tac/Cac																																																																															
FLT1	2321	MSKCC	GRCh37	13	28891691	28891691	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	159	596	0	ENST00000282397.4:c.3330C>A	p.Cys1110Ter	p.C1110*	ENST00000282397	NM_002019.4	1110	tgC/tgA																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437968	110437968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	17	149	0	ENST00000375856.3:c.433G>A	p.Glu145Lys	p.E145K	ENST00000375856	NM_003749.2	145	Gag/Aag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30069011	30069011	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1278395721		P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	35	420	0	ENST00000331968.5:c.1918C>T	p.Pro640Ser	p.P640S	ENST00000331968	NM_002742.2	640	Cct/Tct																																																																															
TSC2	7249	MSKCC	GRCh37	16	2120456	2120456	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs45517192		P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	61	524	0	ENST00000219476.3:c.1717-1G>T		p.X573_splice	ENST00000219476	NM_000548.3	573																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3786752	3786752	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	52	542	0	ENST00000262367.5:c.4459C>A	p.His1487Asn	p.H1487N	ENST00000262367	NM_004380.2	1487	Cac/Aac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984640	72984640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	146	714	1	ENST00000268489.5:c.2944del	p.Asp982ThrfsTer87	p.D982Tfs*87	ENST00000268489	NM_006885.3	982	Gac/ac																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836623	89836623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	544	652	0	ENST00000389301.3:c.2267G>T	p.Arg756Leu	p.R756L	ENST00000389301	NM_000135.2	756	cGt/cTt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89871762	89871762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	299	516	0	ENST00000389301.3:c.635G>C	p.Arg212Thr	p.R212T	ENST00000389301	NM_000135.2	212	aGg/aCg																																																																															
NF1	4763	MSKCC	GRCh37	17	29654551	29654551	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	71	222	0	ENST00000358273.4:c.5303A>T	p.Glu1768Val	p.E1768V	ENST00000358273	NM_001042492.2	1768	gAg/gTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440741	56440741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	56	503	0	ENST00000407977.2:c.477G>T	p.Trp159Cys	p.W159C	ENST00000407977		159	tgG/tgT																																																																															
BRD4	23476	MSKCC	GRCh37	19	15383634	15383634	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	34	405	0	ENST00000263377.2:c.277A>T	p.Asn93Tyr	p.N93Y	ENST00000263377	NM_058243.2	93	Aac/Tac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248393	212248393	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	21	282	0	ENST00000342788.4:c.3874C>A	p.Pro1292Thr	p.P1292T	ENST00000342788	NM_005235.2	1292	Cca/Aca																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967176	134967176	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	31	349	0	ENST00000398015.3:c.2515C>A	p.Gln839Lys	p.Q839K	ENST00000398015	NM_004441.4	839	Cag/Aag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967333	134967333	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	92	401	0	ENST00000398015.3:c.2672T>C	p.Val891Ala	p.V891A	ENST00000398015	NM_004441.4	891	gTg/gCg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510201	187510201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	34	454	0	ENST00000441802.2:c.13312C>A	p.Pro4438Thr	p.P4438T	ENST00000441802	NM_005245.3	4438	Ccc/Acc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31493340	31493340	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs745898205		P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	25	272	0	ENST00000344624.3:c.1816A>G	p.Met606Val	p.M606V	ENST00000344624		606	Atg/Gtg																																																																															
APC	324	MSKCC	GRCh37	5	112176294	112176294	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	75	263	0	ENST00000257430.4:c.5003A>T	p.Glu1668Val	p.E1668V	ENST00000257430	NM_000038.5	1668	gAg/gTg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120249	94120249	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	31	308	0	ENST00000369303.4:c.802G>T	p.Gly268Cys	p.G268C	ENST00000369303	NM_004440.3	268	Ggc/Tgc																																																																															
MET	4233	MSKCC	GRCh37	7	116423470	116423470	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	35	320	0	ENST00000397752.3:c.3745T>C	p.Trp1249Arg	p.W1249R	ENST00000397752	NM_000245.2	1249	Tgg/Cgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879241	151879241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	92	510	0	ENST00000262189.6:c.5704G>A	p.Val1902Ile	p.V1902I	ENST00000262189	NM_170606.2	1902	Gtt/Att																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0034683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	1162	603	2	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287446	46287446	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs774801990		P-0034683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	143	354	0	ENST00000334344.6:c.5305C>T	p.Arg1769Ter	p.R1769*	ENST00000334344	NM_152641.2	1769	Cga/Tga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152201873	152201873	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779180038		P-0034683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	45	326	0	ENST00000206249.3:c.727C>T	p.Arg243Cys	p.R243C	ENST00000206249	NM_000125.3	243	Cgt/Tgt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36989302	36989303	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	48	561	0	ENST00000354822.5:c.32_33insT	p.Trp12LeufsTer34	p.W12Lfs*34	ENST00000354822	NM_001079668.2	11	ggc/ggTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574013	7574014	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAGCGCTCA			P-0034683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	145	756	0	ENST00000269305.4:c.1005_1013dup	p.Arg337_Glu339dup	p.R337_E339dup	ENST00000269305	NM_001126112.2	337	ttc/ttTGAGCGCTTc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660661	227660661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	65	692	1	ENST00000305123.5:c.2794A>G	p.Arg932Gly	p.R932G	ENST00000305123	NM_005544.2	932	Aga/Gga																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62320991	62320991	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs1405025025		P-0034683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	61	723	0	ENST00000482936.1:c.2015C>T	p.Ala672Val	p.A672V	ENST00000482936		672	gCt/gTt																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271371	26271421	+	inframe_deletion	In_Frame_Del	DEL	GTCTTGAAGTCCTGAGCGATTTCTCGCACCAGGCGTTGGAAAGGCAACTTG	GTCTTGAAGTCCTGAGCGATTTCTCGCACCAGGCGTTGGAAAGGCAACTTG	-			P-0034683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	76	649	0	ENST00000305910.3:c.192_242del	p.Lys65_Thr81del	p.K65_T81del	ENST00000305910	NM_003534.2	64	cgCAAGTTGCCTTTCCAACGCCTGGTGCGAGAAATCGCTCAGGACTTCAAGACa/cga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443674	49443674	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	157	654	0	ENST00000301067.7:c.3697G>T	p.Glu1233Ter	p.E1233*	ENST00000301067	NM_003482.3	1233	Gag/Tag																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14016045	14016045	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	77	211	0	ENST00000311895.7:c.365G>C	p.Arg122Thr	p.R122T	ENST00000311895	NM_005236.2	122	aGa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578266	7578267	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	412	661	0	ENST00000269305.4:c.582dup	p.Ile195TyrfsTer14	p.I195Yfs*14	ENST00000269305	NM_001126112.2	194	-/T																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245091	41245091	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80357669		P-0034685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	564	758	0	ENST00000357654.3:c.2457del	p.Asp821IlefsTer25	p.D821Ifs*25	ENST00000357654	NM_007294.3	819	tcC/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579381	7579381	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	161	690	0	ENST00000269305.4:c.306del	p.Tyr103ThrfsTer20	p.Y103Tfs*20	ENST00000269305	NM_001126112.2	102	acC/ac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878176	151878176	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	90	558	0	ENST00000262189.6:c.6769C>T	p.Arg2257Ter	p.R2257*	ENST00000262189	NM_170606.2	2257	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0034727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	269	826	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0034727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	33	238	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78931459	78931459	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761590823		P-0034727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	176	762	3	ENST00000306801.3:c.3406G>A	p.Gly1136Ser	p.G1136S	ENST00000306801	NM_020761.2	1136	Ggc/Agc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95593044	95593046	+	missense_variant	Missense_Mutation	ONP	GGT	GGT	CCA			P-0034727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	136	677	1	ENST00000343455.3:c.774_776delinsTGG	p.Pro259Gly	p.P259G	ENST00000343455	NM_177438.2	258	ggACCa/ggTGGa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827888	72827888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	187	852	0	ENST00000268489.5:c.8693C>T	p.Ala2898Val	p.A2898V	ENST00000268489	NM_006885.3	2898	gCc/gTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575673	48575673	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	136	763	2	ENST00000342988.3:c.433G>T	p.Gly145Ter	p.G145*	ENST00000342988	NM_005359.5	145	Gga/Tga																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128047332	128047332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	144	632	0	ENST00000285398.2:c.590G>A	p.Cys197Tyr	p.C197Y	ENST00000285398	NM_000122.1	197	tGc/tAc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs483352822		P-0034750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	20	539	0	ENST00000368323.3:c.270G>C	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atC																																																																															
STK11	6794	MSKCC	GRCh37	19	1220706	1220706	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	50	726	0	ENST00000326873.7:c.727del	p.Val243SerfsTer44	p.V243Sfs*44	ENST00000326873	NM_000455.4	242	Ggg/gg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600408	10600408	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1412883238		P-0034750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	85	905	1	ENST00000171111.5:c.1447C>T	p.Arg483Cys	p.R483C	ENST00000171111	NM_203500.1	483	Cgc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	41988724	41988724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	30	490	1	ENST00000219905.7:c.1516G>A	p.Glu506Lys	p.E506K	ENST00000219905	NM_001164273.1	506	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273269	55273269	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs142188270		P-0034750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	57	518	0	ENST00000275493.2:c.3592C>G	p.Leu1198Val	p.L1198V	ENST00000275493	NM_005228.3	1198	Cta/Gta																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039611	47039611	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0034750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	47	600	0	ENST00000329236.7:c.829G>C	p.Glu277Gln	p.E277Q	ENST00000329236	NM_001204466.1	277	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	62	797	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0034763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	28	415	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822033	72822033	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	37	471	0	ENST00000268489.5:c.10142G>C	p.Arg3381Pro	p.R3381P	ENST00000268489	NM_006885.3	3381	cGg/cCg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41223238	41223238	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224762		P-0034763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	47	544	0	ENST00000357654.3:c.4693G>A	p.Glu1565Lys	p.E1565K	ENST00000357654	NM_007294.3	1565	Gaa/Aaa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222738	53222738	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	52	514	0	ENST00000375401.3:c.4198G>T	p.Glu1400Ter	p.E1400*	ENST00000375401	NM_004187.3	1400	Gag/Tag																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78936768	78936768	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs987417975		P-0034876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	29	775	1	ENST00000306801.3:c.3850G>A	p.Gly1284Arg	p.G1284R	ENST00000306801	NM_020761.2	1284	Gga/Aga																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512352	149512352	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	75	614	0	ENST00000261799.4:c.1088G>T	p.Gly363Val	p.G363V	ENST00000261799	NM_002609.3	363	gGc/gTc																																																																															
AR	367	MSKCC	GRCh37	X	66931258	66931258	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	44	187	0	ENST00000374690.3:c.1900A>C	p.Lys634Gln	p.K634Q	ENST00000374690	NM_000044.3	634	Aaa/Caa																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22162107	22162107	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	209	389	0	ENST00000215832.6:c.148C>G	p.Arg50Gly	p.R50G	ENST00000215832	NM_002745.4	50	Cga/Gga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115848	8115849	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CACATGTCCT			P-0034920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	205	511	2	ENST00000346208.3:c.1196_1205dup	p.Leu403HisfsTer107	p.L403Hfs*107	ENST00000346208		398	-/CACATGTCCT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55229302	55229302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	212	394	0	ENST00000275493.2:c.1609G>T	p.Asp537Tyr	p.D537Y	ENST00000275493	NM_005228.3	537	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0035003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	170	578	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55143599	55143599	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	91	294	0	ENST00000257290.5:c.1831A>G	p.Thr611Ala	p.T611A	ENST00000257290	NM_006206.4	611	Aca/Gca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221240	5221240	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	137	525	0	ENST00000357368.4:c.3226G>A	p.Asp1076Asn	p.D1076N	ENST00000357368	NM_002850.3	1076	Gat/Aat																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17386615	17386615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	170	616	0	ENST00000359435.4:c.550G>A	p.Glu184Lys	p.E184K	ENST00000359435	NM_001033549.1	184	Gaa/Aaa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5055682	5055682	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	79	257	0	ENST00000381652.3:c.950A>T	p.Tyr317Phe	p.Y317F	ENST00000381652	NM_004972.3	317	tAt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	973	331	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602354	10602354	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	169	713	0	ENST00000171111.5:c.1224del	p.Met409Ter	p.M409*	ENST00000171111	NM_203500.1	408	ccC/cc																																																																															
STK11	6794	MSKCC	GRCh37	19	1219336	1219336	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	169	683	1	ENST00000326873.7:c.388G>T	p.Glu130Ter	p.E130*	ENST00000326873	NM_000455.4	130	Gag/Tag																																																																															
CIC	23152	MSKCC	GRCh37	19	42795382	42795382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	115	529	1	ENST00000575354.2:c.2462G>A	p.Gly821Glu	p.G821E	ENST00000575354	NM_015125.3	821	gGa/gAa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851249	63851249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	66	552	0	ENST00000279873.7:c.2027C>T	p.Pro676Leu	p.P676L	ENST00000279873	NM_032199.2	676	cCc/cTc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549097	21549097	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762135360		P-0035013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	59	482	0	ENST00000382592.4:c.3179G>T	p.Gly1060Val	p.G1060V	ENST00000382592	NM_014572.2	1060	gGa/gTa																																																																															
MGA	23269	MSKCC	GRCh37	15	42000020	42000020	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	140	431	0	ENST00000219905.7:c.2287del	p.Trp763GlyfsTer54	p.W763Gfs*54	ENST00000219905	NM_001164273.1	761	ccT/cc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144106	11144106	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	170	686	0	ENST00000344626.4:c.3687C>G	p.Ile1229Met	p.I1229M	ENST00000344626	NM_003072.3	1229	atC/atG																																																																															
KDR	3791	MSKCC	GRCh37	4	55972103	55972103	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	80	375	0	ENST00000263923.4:c.1541T>A	p.Val514Glu	p.V514E	ENST00000263923	NM_002253.2	514	gTa/gAa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555033	106555033	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	67	459	0	ENST00000369096.4:c.2150G>T	p.Gly717Val	p.G717V	ENST00000369096	NM_001198.3	717	gGg/gTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104012	69104012	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	80	267	1	ENST00000288368.4:c.4402T>A	p.Tyr1468Asn	p.Y1468N	ENST00000288368	NM_024870.2	1468	Tat/Aat																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463296	25463297	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	T			P-0035013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	105	387	0	ENST00000264709.3:c.2196_2197delinsA	p.Phe732LeufsTer47	p.F732Lfs*47	ENST00000264709	NM_175629.2	732	ttTGag/ttAag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	192	776	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	40	352	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
ARAF	369	MSKCC	GRCh37	X	47429346	47429346	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755229896		P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	189	962	0	ENST00000377045.4:c.1474G>A	p.Val492Ile	p.V492I	ENST00000377045	NM_001654.4	492	Gtc/Atc																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427784	72427784	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1438865674		P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	47	287	0	ENST00000477973.2:c.704C>T	p.Arg236Trp	p.R236W	ENST00000477973	NM_012234.5	236	Cgg/Tgg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65313336	65313336	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1163622258		P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	46	611	0	ENST00000342505.4:c.1778C>T	p.Thr593Met	p.T593M	ENST00000342505	NM_002227.2	593	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112178033	112178033	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs773874693		P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	27	381	2	ENST00000257430.4:c.6747del	p.Gly2250AlafsTer29	p.G2250Afs*29	ENST00000257430	NM_000038.5	2248	Aaa/aa																																																																															
CIC	23152	MSKCC	GRCh37	19	42798142	42798142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	182	857	1	ENST00000575354.2:c.4096C>T	p.Arg1366Trp	p.R1366W	ENST00000575354	NM_015125.3	1366	Cgg/Tgg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223769	53223769	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376572303		P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	94	1159	2	ENST00000375401.3:c.3590C>T	p.Ala1197Val	p.A1197V	ENST00000375401	NM_004187.3	1197	gCg/gTg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225379485	225379485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	77	503	2	ENST00000264414.4:c.383G>A	p.Arg128His	p.R128H	ENST00000264414	NM_003590.4	128	cGt/cAt																																																																															
ATM	472	MSKCC	GRCh37	11	108201089	108201089	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779865		P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	64	547	3	ENST00000278616.4:c.7456C>T	p.Arg2486Ter	p.R2486*	ENST00000278616	NM_000051.3	2486	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432420	49432420	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	66	888	1	ENST00000301067.7:c.8719del	p.Tyr2907ThrfsTer3	p.Y2907Tfs*3	ENST00000301067	NM_003482.3	2907	Tac/ac																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62323173	62323173	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs142877871		P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	104	413	0	ENST00000482936.1:c.2635C>T	p.Arg879Trp	p.R879W	ENST00000482936		879	Cgg/Tgg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793286	242793286	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757334336		P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	210	990	1	ENST00000334409.5:c.791G>A	p.Arg264His	p.R264H	ENST00000334409	NM_005018.2	264	cGc/cAc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702205	47702205	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63750047		P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	132	570	0	ENST00000233146.2:c.1801C>T	p.Gln601Ter	p.Q601*	ENST00000233146	NM_000251.2	601	Cag/Tag																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775779	9775779	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1205317546		P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	79	933	0	ENST00000377346.4:c.322C>T	p.Arg108Cys	p.R108C	ENST00000377346	NM_005026.3	108	Cgc/Tgc																																																																															
XIAP	331	MSKCC	GRCh37	X	123040881	123040881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	122	1132	0	ENST00000355640.3:c.1344G>T	p.Lys448Asn	p.K448N	ENST00000355640		448	aaG/aaT																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645701	12645701	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs397516826		P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	24	343	0	ENST00000251849.4:c.768G>T	p.Arg256Ser	p.R256S	ENST00000251849	NM_002880.3	256	agG/agT																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94197308	94197308	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	138	516	1	ENST00000323929.3:c.1196del	p.Phe399SerfsTer29	p.F399Sfs*29	ENST00000323929	NM_005591.3	399	tTc/tc																																																																															
CCND1	595	MSKCC	GRCh37	11	69457951	69457951	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	43	524	0	ENST00000227507.2:c.355del	p.Leu119Ter	p.L119*	ENST00000227507	NM_053056.2	117	atC/at																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272513	15272513	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	68	665	0	ENST00000263388.2:c.5926del	p.Leu1976TyrfsTer36	p.L1976Yfs*36	ENST00000263388	NM_000435.2	1976	Cta/ta																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112445	115112445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	83	677	1	ENST00000257566.3:c.1295C>T	p.Ser432Leu	p.S432L	ENST00000257566	NM_016569.3	432	tCg/tTg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798271	45798271	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	34	645	1	ENST00000372115.3:c.623C>A	p.Ala208Asp	p.A208D	ENST00000372115	NM_001048171.1	208	gCc/gAc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115260812	115260812	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375339756		P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	78	652	0	ENST00000438362.2:c.2513G>A	p.Arg838His	p.R838H	ENST00000438362	NM_001242891.1	838	cGt/cAt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115261305	115261306	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	128	563	1	ENST00000438362.2:c.2415dup	p.Ile806TyrfsTer5	p.I806Yfs*5	ENST00000438362	NM_001242891.1	805	-/T																																																																															
DDR2	4921	MSKCC	GRCh37	1	162749908	162749908	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	44	479	0	ENST00000367921.3:c.2440C>A	p.Leu814Ile	p.L814I	ENST00000367921	NM_006182.2	814	Ctc/Atc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946996	71946996	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs754591389		P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	114	958	2	ENST00000298229.2:c.2845C>T	p.Arg949Ter	p.R949*	ENST00000298229	NM_001567.3	949	Cga/Tga																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134271	41134271	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs138145556		P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	47	519	0	ENST00000379561.5:c.1357A>C	p.Ser453Arg	p.S453R	ENST00000379561	NM_002015.3	453	Agt/Cgt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518688	103518688	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770594395		P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	22	336	0	ENST00000355739.4:c.2276G>A	p.Arg759Gln	p.R759Q	ENST00000355739	NM_000123.3	759	cGg/cAg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396562	396562	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	72	965	0	ENST00000262320.3:c.464T>C	p.Ile155Thr	p.I155T	ENST00000262320	NM_003502.3	155	aTc/aCc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37672060	37672060	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	112	540	0	ENST00000447079.4:c.2845A>G	p.Ser949Gly	p.S949G	ENST00000447079	NM_015083.1	949	Agc/Ggc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15383885	15383885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	59	606	1	ENST00000263377.2:c.26C>T	p.Thr9Met	p.T9M	ENST00000263377	NM_058243.2	9	aCg/aTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218848	36218848	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774736378		P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	49	805	1	ENST00000222270.7:c.4459C>T	p.Arg1487Cys	p.R1487C	ENST00000222270	NM_014727.1	1487	Cgc/Tgc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99185084	99185084	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775014766		P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	50	561	0	ENST00000074304.5:c.2486G>A	p.Arg829Gln	p.R829Q	ENST00000074304	NM_001134224.1	829	cGg/cAg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713651	30713651	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769750420		P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	75	509	0	ENST00000359013.4:c.1051G>A	p.Ala351Thr	p.A351T	ENST00000359013	NM_001024847.2	351	Gcc/Acc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928060	49928060	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	80	684	0	ENST00000296474.3:c.3668A>G	p.Lys1223Arg	p.K1223R	ENST00000296474	NM_002447.2	1223	aAg/aGg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356413	66356413	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764384268		P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	33	413	0	ENST00000273854.3:c.1084C>T	p.Arg362Trp	p.R362W	ENST00000273854	NM_004439.5	362	Cgg/Tgg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38954955	38954955	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111974076		P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	14	259	0	ENST00000357387.3:c.2618G>A	p.Arg873His	p.R873H	ENST00000357387	NM_152756.3	873	cGt/cAt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38968107	38968107	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	24	377	0	ENST00000357387.3:c.998A>G	p.Asp333Gly	p.D333G	ENST00000357387	NM_152756.3	333	gAt/gGt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679755	30679756	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	110	683	0	ENST00000376406.3:c.1963_1964del	p.Leu655ArgfsTer30	p.L655Rfs*30	ENST00000376406	NM_014641.2	655	CTa/a																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151856054	151856054	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	34	594	1	ENST00000262189.6:c.11564A>G	p.Gln3855Arg	p.Q3855R	ENST00000262189	NM_170606.2	3855	cAg/cGg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151917624	151917624	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	45	817	0	ENST00000262189.6:c.3696A>C	p.Glu1232Asp	p.E1232D	ENST00000262189	NM_170606.2	1232	gaA/gaC																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70982004	70982004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	108	1016	2	ENST00000276594.2:c.92C>T	p.Thr31Met	p.T31M	ENST00000276594	NM_024504.3	31	aCg/aTg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141568597	141568597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	67	638	0	ENST00000220592.5:c.865G>A	p.Ala289Thr	p.A289T	ENST00000220592	NM_012154.3	289	Gcc/Acc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786923	135786923	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs535868591		P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	31	430	0	ENST00000298552.3:c.946C>T	p.Arg316Trp	p.R316W	ENST00000298552	NM_001162426.1	316	Cgg/Tgg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391001	139391001	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	135	1107	2	ENST00000277541.6:c.7190T>C	p.Leu2397Pro	p.L2397P	ENST00000277541	NM_017617.3	2397	cTg/cCg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401333	139401333	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	221	918	0	ENST00000277541.6:c.3736del	p.Asp1246ThrfsTer199	p.D1246Tfs*199	ENST00000277541	NM_017617.3	1246	Gac/ac																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80646135	80646135	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1264916735		P-0035031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	16	88	0	ENST00000286548.4:c.17T>C	p.Ile6Thr	p.I6T	ENST00000286548	NM_002072.3	6	aTc/aCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	502	555	2	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CASP8	841	MSKCC	GRCh37	2	202141586	202141586	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760898260		P-0035093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	207	354	0	ENST00000358485.4:c.874C>T	p.Arg292Trp	p.R292W	ENST00000358485	NM_001080125.1	292	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0035093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	451	490	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100436	8100436	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1220437638		P-0035093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	352	643	1	ENST00000346208.3:c.410C>T	p.Ser137Leu	p.S137L	ENST00000346208		137	tCg/tTg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740875	58740875	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	206	396	0	ENST00000305921.3:c.1780T>G	p.Leu594Val	p.L594V	ENST00000305921	NM_003620.3	594	Tta/Gta																																																																															
PGR	5241	MSKCC	GRCh37	11	100912717	100912717	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1181450031		P-0035163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	122	501	0	ENST00000325455.5:c.2605C>T	p.Arg869Cys	p.R869C	ENST00000325455	NM_001202474.3	869	Cgt/Tgt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641058	23641058	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45464991		P-0035163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	388	676	0	ENST00000261584.4:c.2417C>T	p.Pro806Leu	p.P806L	ENST00000261584	NM_024675.3	806	cCg/cTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120675	115120676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	160	648	0	ENST00000257566.3:c.330dup	p.Glu111ArgfsTer27	p.E111Rfs*27	ENST00000257566	NM_016569.3	110	-/A																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115944	8115945	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	116	404	0	ENST00000346208.3:c.1292dup	p.Pro432ThrfsTer75	p.P432Tfs*75	ENST00000346208		430	-/G																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366959	15366959	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	232	697	0	ENST00000263377.2:c.1667A>G	p.Glu556Gly	p.E556G	ENST00000263377	NM_058243.2	556	gAa/gGa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123217303	123217303	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	107	559	0	ENST00000218089.9:c.2957A>G	p.Asn986Ser	p.N986S	ENST00000218089	NM_001042749.1	986	aAt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0035167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	442	805	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0035167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	560	679	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																															
KDR	3791	MSKCC	GRCh37	4	55961002	55961002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	321	665	2	ENST00000263923.4:c.2938G>A	p.Glu980Lys	p.E980K	ENST00000263923	NM_002253.2	980	Gag/Aag																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80343568	80343568	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	157	474	0	ENST00000286548.4:c.751A>T	p.Ser251Cys	p.S251C	ENST00000286548	NM_002072.3	251	Agc/Tgc																																																																															
FANCC	2176	MSKCC	GRCh37	9	97912356	97912356	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs769039987		P-0035167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	236	423	0	ENST00000289081.3:c.535C>T	p.Arg179Ter	p.R179*	ENST00000289081	NM_000136.2	179	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519991		P-0035219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	41	489	0	ENST00000269305.4:c.536A>C	p.His179Pro	p.H179P	ENST00000269305	NM_001126112.2	179	cAt/cCt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026123	71026124	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAAA			P-0035219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	116	329	0	ENST00000318789.4:c.1495_1498dup	p.Ala500ValfsTer18	p.A500Vfs*18	ENST00000318789	NM_032682.5	500	gct/gTTTGct																																																																															
APC	324	MSKCC	GRCh37	5	112175153	112175153	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	27	194	0	ENST00000257430.4:c.3862G>T	p.Gly1288Ter	p.G1288*	ENST00000257430	NM_000038.5	1288	Gga/Tga																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484634	57484737	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTAGGATGCTGTGGGCTTGGCTGTTCGTAAAGAACGCTTTGCTTCTGTGTTGTTAGGGATCAGGGTCGCTGCTCACGCTCTTGGCTTTGCTCTCTTTGGTTAA	GGTAGGATGCTGTGGGCTTGGCTGTTCGTAAAGAACGCTTTGCTTCTGTGTTGTTAGGGATCAGGGTCGCTGCTCACGCTCTTGGCTTTGCTCTCTTTGGTTAA	-			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	63	450	0	ENST00000371085.3:c.718+1_719-1del		p.X240_splice	ENST00000371085	NM_000516.4	240																																																																																
GNAS	2778	MSKCC	GRCh37	20	57484858	57485003	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTTTGTGGAGTGACCGCCCACCCCCTGCGCTTGCCCAGGAGGCCCTGGTCTGCACTGTTTATAGAGAAGAACCCCGTGCAAGCATTCCAGACCCCTGGCCGAAAGCGCGCTTCTCCCAAGCATTCACACGGCCTCCCTTCTTGT	AGGTTTGTGGAGTGACCGCCCACCCCCTGCGCTTGCCCAGGAGGCCCTGGTCTGCACTGTTTATAGAGAAGAACCCCGTGCAAGCATTCCAGACCCCTGGCCGAAAGCGCGCTTCTCCCAAGCATTCACACGGCCTCCCTTCTTGT	-			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	79	371	0	ENST00000371085.3:c.839+1_840-1del		p.X280_splice	ENST00000371085	NM_000516.4	280																																																																																
GNAS	2778	MSKCC	GRCh37	20	57485136	57485387	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGTGTATGGCTTCCACTCTTGCTGGCTGTTCATTGCGGTGGTTCTTTTTCAAACGGTCAGGCTGAAAACCCCCATCCCCCTCCCACCACCAAACCATAAAGGATCTATAAGAGAAGCAAGAAAAACGCACTCCCACTAATTCTCATATGGAAAAATCAGGGTTTTGAAGACTTCAGGAGCTACAGAGATGCTAGCACCCCAGCTCTGCTTGAATTTTAAATTACATTAATATGTATTCCCTTTTTATATA	GGTGTGTATGGCTTCCACTCTTGCTGGCTGTTCATTGCGGTGGTTCTTTTTCAAACGGTCAGGCTGAAAACCCCCATCCCCCTCCCACCACCAAACCATAAAGGATCTATAAGAGAAGCAAGAAAAACGCACTCCCACTAATTCTCATATGGAAAAATCAGGGTTTTGAAGACTTCAGGAGCTACAGAGATGCTAGCACCCCAGCTCTGCTTGAATTTTAAATTACATTAATATGTATTCCCTTTTTATATA	-			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	48	250	0	ENST00000371085.3:c.970+1_971-1del		p.X324_splice	ENST00000371085	NM_000516.4	324																																																																																
ALK	238	MSKCC	GRCh37	2	29474041	29474041	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs78723472		P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	127	591	0	ENST00000389048.3:c.2134G>A	p.Val712Met	p.V712M	ENST00000389048	NM_004304.4	712	Gtg/Atg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761381	59761381	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	214	426	1	ENST00000259008.2:c.3026del	p.Gly1009AspfsTer50	p.G1009Dfs*50	ENST00000259008	NM_032043.2	1009	gGa/ga																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965707	93965707	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752253692		P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	94	282	0	ENST00000369303.4:c.2221G>A	p.Gly741Arg	p.G741R	ENST00000369303	NM_004440.3	741	Gga/Aga																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485456	57485736	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGAGTCGAGCCTGTCTTTAGTTTCCTCTCTTGTTCCTCCTCTTTTTCTCATGGATGTAAATTTACTTAATTCCAAATTCAGGGGTTCAGCTACCCAGTTCCATGGTTTTAGTTCACGCACATCCAGTGTGGATTTGAGCTCTTTGCGCCCCTCTTTTTGCTTTTGTTTTCATATGACATCAGAGGCTGGCTGACAGCCGTCCCTGGTAGGTGTCCCCATCAGGGATAGGGTGGTTCCTGGCGAGGGTGTCACTGACAAGTCCCCTTGTTTGTGCCCGCA	GGTGAGTCGAGCCTGTCTTTAGTTTCCTCTCTTGTTCCTCCTCTTTTTCTCATGGATGTAAATTTACTTAATTCCAAATTCAGGGGTTCAGCTACCCAGTTCCATGGTTTTAGTTCACGCACATCCAGTGTGGATTTGAGCTCTTTGCGCCCCTCTTTTTGCTTTTGTTTTCATATGACATCAGAGGCTGGCTGACAGCCGTCCCTGGTAGGTGTCCCCATCAGGGATAGGGTGGTTCCTGGCGAGGGTGTCACTGACAAGTCCCCTTGTTTGTGCCCGCA	-			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	65	250	0	ENST00000371085.3:c.1038+1_1039-1del		p.X346_splice	ENST00000371085	NM_000516.4	346																																																																																
DICER1	23405	MSKCC	GRCh37	14	95593014	95593014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	87	377	0	ENST00000343455.3:c.806G>T	p.Arg269Ile	p.R269I	ENST00000343455	NM_177438.2	269	aGa/aTa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121536	2121536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	311	632	0	ENST00000219476.3:c.1865G>T	p.Arg622Leu	p.R622L	ENST00000219476	NM_000548.3	622	cGg/cTg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89457216	89457216	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	84	329	0	ENST00000336596.2:c.1698-1G>T		p.X566_splice	ENST00000336596	NM_005233.5	566																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27106495	27106495	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	238	438	2	ENST00000324856.7:c.6106G>T	p.Glu2036Ter	p.E2036*	ENST00000324856	NM_006015.4	2036	Gaa/Taa																																																																															
FH	2271	MSKCC	GRCh37	1	241669312	241669312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	54	309	0	ENST00000366560.3:c.895G>T	p.Ala299Ser	p.A299S	ENST00000366560	NM_000143.3	299	Gca/Tca																																																																															
SUFU	51684	MSKCC	GRCh37	10	104269045	104269045	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	202	410	0	ENST00000369902.3:c.302del	p.Asp101AlafsTer20	p.D101Afs*20	ENST00000369902	NM_016169.3	101	gAc/gc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572252	64572252	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	288	296	0	ENST00000337652.1:c.1402G>T	p.Glu468Ter	p.E468*	ENST00000337652	NM_130803.2	468	Gag/Tag																																																																															
PGR	5241	MSKCC	GRCh37	11	100998274	100998275	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	58	60	0	ENST00000325455.5:c.1527dup	p.Ala510ArgfsTer64	p.A510Rfs*64	ENST00000325455	NM_001202474.3	509	-/C																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118360559	118360559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	152	325	0	ENST00000534358.1:c.4532G>T	p.Gly1511Val	p.G1511V	ENST00000534358	NM_005933.3	1511	gGa/gTa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858625	57858625	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs150011919		P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	354	436	0	ENST00000228682.2:c.363C>A	p.Tyr121Ter	p.Y121*	ENST00000228682	NM_005269.2	121	taC/taA																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112418	115112418	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	503	419	0	ENST00000257566.3:c.1322C>A	p.Thr441Asn	p.T441N	ENST00000257566	NM_016569.3	441	aCc/aAc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423637	88423637	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	85	294	0	ENST00000360948.2:c.2198C>G	p.Pro733Arg	p.P733R	ENST00000360948	NM_001012338.2	733	cCc/cGc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476354	88476354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	305	482	1	ENST00000360948.2:c.1778C>A	p.Thr593Asn	p.T593N	ENST00000360948	NM_001012338.2	593	aCc/aAc																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2093595	2093595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	302	547	0	ENST00000219066.1:c.682G>T	p.Val228Leu	p.V228L	ENST00000219066	NM_002528.5	228	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576849	7576874	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTACCTGAAGGGTGAAATATTCTCCA	GTACCTGAAGGGTGAAATATTCTCCA	TCCT			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	150	518	1	ENST00000269305.4:c.972_993+4delinsAGGA		p.X324_splice	ENST00000269305	NM_001126112.2	324																																																																																
SMAD2	4087	MSKCC	GRCh37	18	45371855	45372032	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTATGATTAAAAAAGGTAAAAGAAATTGTCAAAAGAGTATCATTATTAAAAAGTAATTTTAAAAGGGTTACAAGTTTTAGAATATGAGCATGCAATCATCTACTGATTCCTAAAATTAGCAACAAGAAAAACTAAGCAAGTTGACATGATAGGTTTATGTACATTATTGAATCCATA	CCTATGATTAAAAAAGGTAAAAGAAATTGTCAAAAGAGTATCATTATTAAAAAGTAATTTTAAAAGGGTTACAAGTTTTAGAATATGAGCATGCAATCATCTACTGATTCCTAAAATTAGCAACAAGAAAAACTAAGCAAGTTGACATGATAGGTTTATGTACATTATTGAATCCATA	-			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	17	243	0	ENST00000262160.6:c.1135+2_1136del		p.X379_splice	ENST00000262160	NM_005901.5	379																																																																																
ALK	238	MSKCC	GRCh37	2	29519840	29519840	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	204	422	0	ENST00000389048.3:c.1731A>T	p.Gln577His	p.Q577H	ENST00000389048	NM_004304.4	577	caA/caT																																																																															
ALK	238	MSKCC	GRCh37	2	29940457	29940457	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	64	239	0	ENST00000389048.3:c.774T>A	p.His258Gln	p.H258Q	ENST00000389048	NM_004304.4	258	caT/caA																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403171	213403171	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	135	244	0	ENST00000342788.4:c.82+2T>A		p.X28_splice	ENST00000342788	NM_005235.2	28																																																																																
GNAS	2778	MSKCC	GRCh37	20	57484479	57484575	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	GTAAGCCAACTGTTACCTTTTTATATAACAGAGATCATGGTTTCTTGACATTCACCCCAGTCCCTCTGGAATAACCAGCTGTCCTCCTCCCCACCAG	GTAAGCCAACTGTTACCTTTTTATATAACAGAGATCATGGTTTCTTGACATTCACCCCAGTCCCTCTGGAATAACCAGCTGTCCTCCTCCCCACCAG	-			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	27	367	0	ENST00000371085.3:c.659+1_660-1del		p.X220_splice	ENST00000371085	NM_000516.4	220																																																																																
EP300	2033	MSKCC	GRCh37	22	41513510	41513510	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	173	413	0	ENST00000263253.7:c.416del	p.Gly139AlafsTer15	p.G139Afs*15	ENST00000263253	NM_001429.3	138	atG/at																																																																															
GATA2	2624	MSKCC	GRCh37	3	128199923	128199923	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	180	407	0	ENST00000341105.2:c.1382C>A	p.Pro461His	p.P461H	ENST00000341105	NM_032638.4	461	cCc/cAc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202797	128202797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	248	501	0	ENST00000341105.2:c.923G>A	p.Arg308Gln	p.R308Q	ENST00000341105	NM_032638.4	308	cGg/cAg																																																																															
TET2	54790	MSKCC	GRCh37	4	106196877	106196877	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1371075754		P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	78	238	0	ENST00000380013.4:c.5210C>T	p.Thr1737Ile	p.T1737I	ENST00000380013	NM_001127208.2	1737	aCc/aTc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31483684	31483684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	27	136	0	ENST00000344624.3:c.2048C>T	p.Pro683Leu	p.P683L	ENST00000344624		683	cCa/cTa																																																																															
APC	324	MSKCC	GRCh37	5	112177725	112177725	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	37	244	0	ENST00000257430.4:c.6434G>C	p.Gly2145Ala	p.G2145A	ENST00000257430	NM_000038.5	2145	gGa/gCa																																																																															
E2F3	1871	MSKCC	GRCh37	6	20483034	20483034	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	105	267	0	ENST00000346618.3:c.767G>A	p.Cys256Tyr	p.C256Y	ENST00000346618	NM_001949.4	256	tGt/tAt																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197445	26197445	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1258094123		P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	92	249	0	ENST00000356476.2:c.34A>T	p.Thr12Ser	p.T12S	ENST00000356476		12	Acg/Tcg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148529772	148529772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	81	269	0	ENST00000320356.2:c.317C>T	p.Ser106Leu	p.S106L	ENST00000320356	NM_004456.4	106	tCa/tTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860713	151860713	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	184	426	0	ENST00000262189.6:c.9949A>T	p.Thr3317Ser	p.T3317S	ENST00000262189	NM_170606.2	3317	Aca/Tca																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046368	69046368	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	103	420	0	ENST00000288368.4:c.3841C>G	p.Gln1281Glu	p.Q1281E	ENST00000288368	NM_024870.2	1281	Cag/Gag																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080579	5080579	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	26	291	0	ENST00000381652.3:c.2330G>A	p.Trp777Ter	p.W777*	ENST00000381652	NM_004972.3	777	tGg/tAg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53247149	53247149	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	112	267	0	ENST00000375401.3:c.352-1G>T		p.X118_splice	ENST00000375401	NM_004187.3	118																																																																																
MED12	9968	MSKCC	GRCh37	X	70351955	70351955	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	227	479	1	ENST00000374080.3:c.4152G>T	p.Lys1384Asn	p.K1384N	ENST00000374080		1384	aaG/aaT																																																																															
BTK	695	MSKCC	GRCh37	X	100612517	100612517	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	145	434	0	ENST00000308731.7:c.1157C>A	p.Ser386Tyr	p.S386Y	ENST00000308731	NM_000061.2	386	tCc/tAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	52	314	0	ENST00000263967.3:c.333G>T	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	70	552	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	44	331	1	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93953233	93953233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	58	459	0	ENST00000369303.4:c.2908C>A	p.Leu970Met	p.L970M	ENST00000369303	NM_004440.3	970	Ctg/Atg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27102066	27102066	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	49	465	0	ENST00000324856.7:c.4994-2A>T		p.X1665_splice	ENST00000324856	NM_006015.4	1665																																																																																
MYCL	4610	MSKCC	GRCh37	1	40363564	40363564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	65	550	0	ENST00000397332.2:c.665G>T	p.Arg222Leu	p.R222L	ENST00000397332	NM_001033082.2	222	cGa/cTa																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400971	72400971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	32	264	0	ENST00000357731.5:c.200C>T	p.Ser67Leu	p.S67L	ENST00000357731	NM_173808.2	67	tCa/tTa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910588	32910588	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	42	347	0	ENST00000380152.3:c.2096A>T	p.Gln699Leu	p.Q699L	ENST00000380152		699	cAg/cTg																																																																															
RB1	5925	MSKCC	GRCh37	13	48937089	48937089	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	29	189	0	ENST00000267163.4:c.857A>T	p.Asp286Val	p.D286V	ENST00000267163	NM_000321.2	286	gAt/gTt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95578585	95578585	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	37	248	0	ENST00000343455.3:c.2041-1G>T		p.X681_splice	ENST00000343455	NM_177438.2	681																																																																																
MAP2K1	5604	MSKCC	GRCh37	15	66727421	66727421	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	29	354	0	ENST00000307102.5:c.137A>G	p.Gln46Arg	p.Q46R	ENST00000307102	NM_002755.3	46	cAg/cGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593533	48593533	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	32	207	1	ENST00000342988.3:c.1284G>T	p.Lys428Asn	p.K428N	ENST00000342988	NM_005359.5	428	aaG/aaT																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198273159	198273159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	83	582	0	ENST00000335508.6:c.1051C>T	p.Pro351Ser	p.P351S	ENST00000335508	NM_012433.2	351	Cca/Tca																																																																															
TOP1	7150	MSKCC	GRCh37	20	39704928	39704928	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	12	132	0	ENST00000361337.2:c.273G>C	p.Glu91Asp	p.E91D	ENST00000361337	NM_003286.2	91	gaG/gaC																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729941	30729941	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	40	267	0	ENST00000359013.4:c.1537A>T	p.Lys513Ter	p.K513*	ENST00000359013	NM_001024847.2	513	Aag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468376	89468376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	22	178	0	ENST00000336596.2:c.1910G>A	p.Ser637Asn	p.S637N	ENST00000336596	NM_005233.5	637	aGt/aAt																																																																															
TP63	8626	MSKCC	GRCh37	3	189526130	189526130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	46	538	0	ENST00000264731.3:c.394A>C	p.Ser132Arg	p.S132R	ENST00000264731	NM_003722.4	132	Agt/Cgt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187522464	187522464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	69	619	0	ENST00000441802.2:c.11599G>T	p.Val3867Phe	p.V3867F	ENST00000441802	NM_005245.3	3867	Gtt/Ttt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524165	187524165	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	32	364	0	ENST00000441802.2:c.11374C>A	p.His3792Asn	p.H3792N	ENST00000441802	NM_005245.3	3792	Cat/Aat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155713	56155713	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	34	273	0	ENST00000399503.3:c.805G>T	p.Val269Leu	p.V269L	ENST00000399503	NM_005921.1	269	Gta/Tta																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637957	176637957	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	57	538	0	ENST00000439151.2:c.2557G>C	p.Glu853Gln	p.E853Q	ENST00000439151	NM_022455.4	853	Gaa/Caa																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158628	26158629	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	21	210	0	ENST00000289316.2:c.231_232delinsTT	p.Glu77_Ala78delinsAspSer	p.E77_A78delinsDS	ENST00000289316	NM_138720.2	77	gaGGct/gaTTct																																																																															
MET	4233	MSKCC	GRCh37	7	116395465	116395465	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	114	479	0	ENST00000397752.3:c.1758G>C	p.Trp586Cys	p.W586C	ENST00000397752	NM_000245.2	586	tgG/tgC																																																																															
PREX2	80243	MSKCC	GRCh37	8	68989678	68989678	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	60	588	0	ENST00000288368.4:c.1616T>A	p.Leu539His	p.L539H	ENST00000288368	NM_024870.2	539	cTc/cAc																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123504102	123504102	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	63	223	0	ENST00000371139.4:c.278G>T	p.Gly93Val	p.G93V	ENST00000371139	NM_001114937.2	93	gGc/gTc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438164	110438164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	39	287	0	ENST00000375856.3:c.237G>T	p.Glu79Asp	p.E79D	ENST00000375856	NM_003749.2	79	gaG/gaT																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438159	110438159	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	37	322	0	ENST00000375856.3:c.242del	p.Lys81SerfsTer12	p.K81Sfs*12	ENST00000375856	NM_003749.2	81	aAg/ag																																																																															
TAP2	6891	MSKCC	GRCh37	6	32802930	32802932	+	splice_donor_variant,coding_sequence_variant	Splice_Site	ONP	CCT	CCT	ACA			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	32	319	0	ENST00000374899.4:c.944_945+1delinsTGT		p.X315_splice	ENST00000374899	NM_018833.2	315																																																																																
TP53	7157	MSKCC	GRCh37	17	7578188	7578188	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs786201592		P-0035270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	382	567	0	ENST00000269305.4:c.661G>T	p.Glu221Ter	p.E221*	ENST00000269305	NM_001126112.2	221	Gag/Tag																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0035272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	151	387	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402595	20402603	+	inframe_deletion	In_Frame_Del	DEL	CGCCGCCGC	CGCCGCCGC	-	rs559169760		P-0035272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	298	186	0	ENST00000346618.3:c.141_149del	p.Ala51_Ala53del	p.A51_A53del	ENST00000346618	NM_001949.4	44	ttCGCCGCCGCc/ttc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163309193	163309193	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	150	432	0	ENST00000271452.3:c.532G>C	p.Glu178Gln	p.E178Q	ENST00000271452	NM_145697.2	178	Gaa/Caa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193218946	193218946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	113	268	0	ENST00000367435.3:c.1504C>T	p.His502Tyr	p.H502Y	ENST00000367435	NM_024529.4	502	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578459	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAC			P-0035272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	210	660	0	ENST00000269305.4:c.469_471dup	p.Val157dup	p.V157dup	ENST00000269305	NM_001126112.2	157	-/GTC																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046488	69046488	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	188	470	0	ENST00000288368.4:c.3961C>G	p.Gln1321Glu	p.Q1321E	ENST00000288368	NM_024870.2	1321	Cag/Gag																																																																															
ABL1	25	MSKCC	GRCh37	9	133710900	133710900	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	118	260	0	ENST00000318560.5:c.67T>A	p.Cys23Ser	p.C23S	ENST00000318560	NM_005157.4	23	Tgt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0035283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	361	889	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PGR	5241	MSKCC	GRCh37	11	100998222	100998222	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	158	282	0	ENST00000325455.5:c.1580C>A	p.Ala527Asp	p.A527D	ENST00000325455	NM_001202474.3	527	gCc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0035288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	162	526	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14303198	14303198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	40	536	0	ENST00000256196.4:c.477G>T	p.Lys159Asn	p.K159N	ENST00000256196		159	aaG/aaT																																																																															
APC	324	MSKCC	GRCh37	5	112175483	112175483	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	38	279	0	ENST00000257430.4:c.4192del	p.Ser1398ValfsTer17	p.S1398Vfs*17	ENST00000257430	NM_000038.5	1398	Agt/gt																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8075673	8075673	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	34	326	0	ENST00000377482.5:c.7A>T	p.Ile3Leu	p.I3L	ENST00000377482	NM_018948.3	3	Ata/Tta																																																																															
NF1	4763	MSKCC	GRCh37	17	29508443	29508443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	19	236	0	ENST00000358273.4:c.590C>T	p.Thr197Ile	p.T197I	ENST00000358273	NM_001042492.2	197	aCa/aTa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533458	63533458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	283	543	0	ENST00000307078.5:c.1696C>T	p.Pro566Ser	p.P566S	ENST00000307078	NM_004655.3	566	Ccc/Tcc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542897	187542898	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	AGGATCA			P-0035288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	14	262	0	ENST00000441802.2:c.4836_4842dup	p.Val1615Ter	p.V1615*	ENST00000441802	NM_005245.3	1614	-/TGATCCT																																																																															
APC	324	MSKCC	GRCh37	5	112116598	112116598	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs137854577		P-0035288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	20	234	0	ENST00000257430.4:c.643C>T	p.Gln215Ter	p.Q215*	ENST00000257430	NM_000038.5	215	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	328	626	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508059	106508059	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs142380460		P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	79	210	0	ENST00000359195.3:c.53G>T	p.Arg18Leu	p.R18L	ENST00000359195	NM_002649.2	18	cGa/cTa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299836	15299836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	253	648	0	ENST00000263388.2:c.1342G>A	p.Asp448Asn	p.D448N	ENST00000263388	NM_000435.2	448	Gac/Aac																																																																															
PMS1	5378	MSKCC	GRCh37	2	190738293	190738293	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	46	360	0	ENST00000441310.2:c.2545G>T	p.Asp849Tyr	p.D849Y	ENST00000441310	NM_000534.4	849	Gat/Tat																																																																															
NF1	4763	MSKCC	GRCh37	17	29664557	29664557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	141	502	0	ENST00000358273.4:c.6599C>A	p.Thr2200Lys	p.T2200K	ENST00000358273	NM_001042492.2	2200	aCa/aAa																																																																															
RARA	5914	MSKCC	GRCh37	17	38506139	38506139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	241	496	0	ENST00000254066.5:c.431G>A	p.Arg144Gln	p.R144Q	ENST00000254066	NM_000964.3	144	cGa/cAa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207119	1207122	+	frameshift_variant	Frame_Shift_Del	DEL	GGAG	GGAG	-			P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	256	724	0	ENST00000326873.7:c.207_210del	p.Glu70ArgfsTer25	p.E70Rfs*25	ENST00000326873	NM_000455.4	69	tcGGAG/tc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176521304	176522326	+	splice_region_variant,intron_variant	Splice_Region	DEL	CTCCCAGCCCAAGGATTGTGGAAAGTGCCTGGCTCATAGTCAGGGCTCAATAAATCTTCACCACTGGGGTGATGATGATGAGAAGAATTTGGTGTGACAGGCTTGATATCCTGTGTCAGCATTAGTCTGTGTCAGCTTTGACTTCACATCTCCTTGTCAGCCTCACAGGCCCTCTACCTCCTTCCTTATGGTTCCCCCCAGACACACCCTCAGCCTCCCTTGGACCCTCCCTAGGTCTGCCCCCCACGTCCACTGCTGTAGGAGGACAGCCCTTCTGCTTGCACCCAGGCCCAGCCCCGGGGTGCTCTTGCTGGGCACTCCTGCACCCCACCCATCAGGGCCTCTCCTTGCAGTTCCCCAGCCCCCTCTGCAAGAATGGCCTCCACTGCTCTTCTGCTCCTCCCCTCCTCTCTACACAGCTGGGGCCACCTGGTGCTCCCTGGGAGGCAGGGATTGAGAAATGCACATTGTGTCATTGGCCCAGGGCCACAGGTCAGCCCCAGGGGCTCAGCCAGAGAAGCCAAAGCAGCCTTCTTCCCAAGCTCCCCGGCTGCACCCGGCCTGCCGCCAGCTCCCTGAATTCCCAGGCCAGTTGGAAGCCAGGCCCTGGTCAAACAGACCCCAGGGCGCCAGCCTGCTTTCCGCACCCAGAAGCTCTGACCCCATGCGGGGACTACCGCTGACCCCTCCAGCGGCAGCTTCCTTCCTTCCTTCCTGCTCCGAGCTCTTCCCCTCTCTCCTGTGTCCTGGGCCTGCCCGCTGGAAGGCCTGCCTCTTAGATCCTTGATACAGTTGCATCCTTGCAACTGCTGTGACAGGCAGGGTGTGACCCACTGCTCTGTTTCCCACAAGACGAACCTGAGGTTCAGAGACGCTAGGAGACTTTTTCAAGGCCACACAGCCTAGCAAGGATTCAGCCCTAGACCTACGTAGCCCTGGTCCAGTGCTGCTTGTCCTGCACCTGCCTCTGCATGCTCCCTCGTGCAGTTGGAGGGCAGCCTCTTCACCCCGTCTGCTGCCCTT	CTCCCAGCCCAAGGATTGTGGAAAGTGCCTGGCTCATAGTCAGGGCTCAATAAATCTTCACCACTGGGGTGATGATGATGAGAAGAATTTGGTGTGACAGGCTTGATATCCTGTGTCAGCATTAGTCTGTGTCAGCTTTGACTTCACATCTCCTTGTCAGCCTCACAGGCCCTCTACCTCCTTCCTTATGGTTCCCCCCAGACACACCCTCAGCCTCCCTTGGACCCTCCCTAGGTCTGCCCCCCACGTCCACTGCTGTAGGAGGACAGCCCTTCTGCTTGCACCCAGGCCCAGCCCCGGGGTGCTCTTGCTGGGCACTCCTGCACCCCACCCATCAGGGCCTCTCCTTGCAGTTCCCCAGCCCCCTCTGCAAGAATGGCCTCCACTGCTCTTCTGCTCCTCCCCTCCTCTCTACACAGCTGGGGCCACCTGGTGCTCCCTGGGAGGCAGGGATTGAGAAATGCACATTGTGTCATTGGCCCAGGGCCACAGGTCAGCCCCAGGGGCTCAGCCAGAGAAGCCAAAGCAGCCTTCTTCCCAAGCTCCCCGGCTGCACCCGGCCTGCCGCCAGCTCCCTGAATTCCCAGGCCAGTTGGAAGCCAGGCCCTGGTCAAACAGACCCCAGGGCGCCAGCCTGCTTTCCGCACCCAGAAGCTCTGACCCCATGCGGGGACTACCGCTGACCCCTCCAGCGGCAGCTTCCTTCCTTCCTTCCTGCTCCGAGCTCTTCCCCTCTCTCCTGTGTCCTGGGCCTGCCCGCTGGAAGGCCTGCCTCTTAGATCCTTGATACAGTTGCATCCTTGCAACTGCTGTGACAGGCAGGGTGTGACCCACTGCTCTGTTTCCCACAAGACGAACCTGAGGTTCAGAGACGCTAGGAGACTTTTTCAAGGCCACACAGCCTAGCAAGGATTCAGCCCTAGACCTACGTAGCCCTGGTCCAGTGCTGCTTGTCCTGCACCTGCCTCTGCATGCTCCCTCGTGCAGTTGGAGGGCAGCCTCTTCACCCCGTCTGCTGCCCTT	-			P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	26	1	0	ENST00000292408.4:c.1519+528_1520-5del		p.X507_splice	ENST00000292408	NM_213647.1	507																																																																																
INHBA	3624	MSKCC	GRCh37	7	41729255	41729255	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	83	470	0	ENST00000242208.4:c.1274G>C	p.Cys425Ser	p.C425S	ENST00000242208	NM_002192.2	425	tGc/tCc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509637	106509637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	218	466	0	ENST00000359195.3:c.1631G>T	p.Arg544Leu	p.R544L	ENST00000359195	NM_002649.2	544	cGa/cTa																																																																															
NBN	4683	MSKCC	GRCh37	8	90995060	90995060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	55	426	0	ENST00000265433.3:c.61G>T	p.Gly21Cys	p.G21C	ENST00000265433	NM_002485.4	21	Ggc/Tgc																																																																															
MYC	4609	MSKCC	GRCh37	8	128751075	128751076	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1418	141	542	0	ENST00000377970.2:c.613dup	p.Asp205GlyfsTer53	p.D205Gfs*53	ENST00000377970	NM_002467.4	204	-/G																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376651	8376651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	111	572	1	ENST00000356435.5:c.4462G>A	p.Val1488Met	p.V1488M	ENST00000356435		1488	Gtg/Atg																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152857997	152857997	+	synonymous_variant	Silent	SNP	G	G	A	rs201983563		P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	107	123	0	ENST00000406277.2:c.618C>T	p.Pro206=	p.P206=	ENST00000406277	NM_152274.4	206	ccC/ccT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0035466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	57	728	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0035466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	29	458	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641180	3641180	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	167	1217	1	ENST00000294008.3:c.2459G>C	p.Arg820Thr	p.R820T	ENST00000294008	NM_032444.2	820	aGg/aCg																																																																															
SRC	6714	MSKCC	GRCh37	20	36022653	36022653	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	50	502	0	ENST00000358208.4:c.526C>G	p.Leu176Val	p.L176V	ENST00000358208		176	Ctc/Gtc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0035484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	305	626	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0035484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	240	787	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
ATRX	546	MSKCC	GRCh37	X	76890105	76890105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	271	618	0	ENST00000373344.5:c.4789G>A	p.Gly1597Ser	p.G1597S	ENST00000373344	NM_000489.3	1597	Ggc/Agc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44921918	44921918	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	200	576	1	ENST00000377967.4:c.1452A>T	p.Arg484Ser	p.R484S	ENST00000377967	NM_021140.2	484	agA/agT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934571		P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	81	682	1	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602488	10602488	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1397945617		P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	66	628	0	ENST00000171111.5:c.1090G>T	p.Gly364Cys	p.G364C	ENST00000171111	NM_203500.1	364	Ggc/Tgc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467207	25467207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	39	399	0	ENST00000264709.3:c.1668G>T	p.Arg556Ser	p.R556S	ENST00000264709	NM_175629.2	556	agG/agT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212537945	212537945	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	78	364	0	ENST00000342788.4:c.1660G>T	p.Glu554Ter	p.E554*	ENST00000342788	NM_005235.2	554	Gag/Tag																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140165	50140165	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	50	582	1	ENST00000246792.3:c.260A>T	p.Gln87Leu	p.Q87L	ENST00000246792	NM_006270.3	87	cAg/cTg																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961321	54961321	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs2230743		P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	58	601	0	ENST00000312783.6:c.311C>T	p.Ser104Leu	p.S104L	ENST00000312783	NM_198436.1	104	tCg/tTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047245	180047245	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs796052104		P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	96	773	1	ENST00000261937.6:c.2470C>A	p.Leu824Met	p.L824M	ENST00000261937	NM_182925.4	824	Ctg/Atg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18473912	18473912	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	30	453	0	ENST00000266497.5:c.1154G>T	p.Ser385Ile	p.S385I	ENST00000266497		385	aGt/aTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433349	49433349	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	45	634	0	ENST00000301067.7:c.8098C>G	p.Leu2700Val	p.L2700V	ENST00000301067	NM_003482.3	2700	Ctg/Gtg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26828902	26828908	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	GATGGGT	GATGGGT	-			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	37	257	0	ENST00000381527.3:c.126_128+4del		p.X42_splice	ENST00000381527	NM_001260.1	42																																																																																
IRS2	8660	MSKCC	GRCh37	13	110436935	110436935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	39	344	0	ENST00000375856.3:c.1466C>T	p.Ser489Leu	p.S489L	ENST00000375856	NM_003749.2	489	tCg/tTg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724866	43724866	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	39	505	0	ENST00000382044.4:c.3201G>T	p.Leu1067Phe	p.L1067F	ENST00000382044	NM_001141980.1	1067	ttG/ttT																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476377	88476377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	62	584	0	ENST00000360948.2:c.1755C>A	p.Phe585Leu	p.F585L	ENST00000360948	NM_001012338.2	585	ttC/ttA																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12044488	12044488	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1168805084		P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	37	406	0	ENST00000353533.5:c.1111G>A	p.Glu371Lys	p.E371K	ENST00000353533	NM_003010.3	371	Gaa/Aaa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615755	1615755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	91	739	0	ENST00000344749.5:c.1516G>A	p.Glu506Lys	p.E506K	ENST00000344749	NM_001136139.2	506	Gag/Aag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214046	36214046	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	74	823	1	ENST00000222270.7:c.2872G>T	p.Gly958Cys	p.G958C	ENST00000222270	NM_014727.1	958	Ggc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216516	36216516	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	95	814	0	ENST00000222270.7:c.3779G>T	p.Arg1260Leu	p.R1260L	ENST00000222270	NM_014727.1	1260	cGt/cTt																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182666	38182666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	67	444	0	ENST00000396334.3:c.819G>A	p.Met273Ile	p.M273I	ENST00000396334	NM_002468.4	273	atG/atA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916803	178916803	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	48	578	0	ENST00000263967.3:c.190G>C	p.Asp64His	p.D64H	ENST00000263967	NM_006218.2	64	Gat/Cat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922297	178922297	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	40	349	0	ENST00000263967.3:c.1066G>C	p.Val356Leu	p.V356L	ENST00000263967	NM_006218.2	356	Gtt/Ctt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430672	181430672	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	159	664	0	ENST00000325404.1:c.524A>T	p.Gln175Leu	p.Q175L	ENST00000325404	NM_003106.3	175	cAg/cTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55970988	55970988	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	76	591	0	ENST00000263923.4:c.1809C>A	p.Cys603Ter	p.C603*	ENST00000263923	NM_002253.2	603	tgC/tgA																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143094828	143094828	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	39	472	0	ENST00000262992.4:c.1316C>G	p.Ser439Cys	p.S439C	ENST00000262992	NM_001101669.1	439	tCt/tGt																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64288384	64288384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	15	346	0	ENST00000370651.3:c.148G>A	p.Glu50Lys	p.E50K	ENST00000370651	NM_003463.4	50	Gaa/Aaa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162622183	162622184	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	53	422	0	ENST00000366898.1:c.513_514delinsAT	p.Ala172Ser	p.A172S	ENST00000366898	NM_004562.2	171	caGGca/caATca																																																																															
HGF	3082	MSKCC	GRCh37	7	81388121	81388121	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	25	334	0	ENST00000222390.5:c.255-1G>T		p.X85_splice	ENST00000222390	NM_000601.4	85																																																																																
LYN	4067	MSKCC	GRCh37	8	56864534	56864534	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	119	567	0	ENST00000519728.1:c.497C>G	p.Ser166Cys	p.S166C	ENST00000519728	NM_002350.3	166	tCt/tGt																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128434627	128434627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	50	597	0	ENST00000265960.3:c.227G>T	p.Trp76Leu	p.W76L	ENST00000265960	NM_001006617.1	76	tGg/tTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410642	63410642	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	63	411	0	ENST00000330258.3:c.2525A>T	p.Glu842Val	p.E842V	ENST00000330258	NM_152424.3	842	gAg/gTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70345304	70345304	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	76	315	0	ENST00000374080.3:c.2330A>G	p.Asp777Gly	p.D777G	ENST00000374080		777	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0035528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	79	607	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																															
TSC2	7249	MSKCC	GRCh37	16	2100400	2100400	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0035528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	54	424	0	ENST00000219476.3:c.139-1G>C		p.X47_splice	ENST00000219476	NM_000548.3	47																																																																																
NF1	4763	MSKCC	GRCh37	17	29490346	29490346	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	40	565	1	ENST00000358273.4:c.431del	p.Ser144PhefsTer21	p.S144Ffs*21	ENST00000358273	NM_001042492.2	144	tCt/tt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584532	187584532	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	25	522	0	ENST00000441802.2:c.3501T>G	p.Asp1167Glu	p.D1167E	ENST00000441802	NM_005245.3	1167	gaT/gaG																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720833	89720836	+	frameshift_variant	Frame_Shift_Del	DEL	AAAT	AAAT	-	rs587782304		P-0035533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	73	315	0	ENST00000371953.3:c.987_990del	p.Asn329LysfsTer14	p.N329Kfs*14	ENST00000371953	NM_000314.4	328	gcAAAT/gc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	103	494	1	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65307173	65307173	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs181919006		P-0035533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	78	411	0	ENST00000342505.4:c.2515C>T	p.Arg839Ter	p.R839*	ENST00000342505	NM_002227.2	839	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221279	36221279	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	197	793	0	ENST00000222270.7:c.5113C>T	p.Arg1705Ter	p.R1705*	ENST00000222270	NM_014727.1	1705	Cga/Tga																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929036	44929037	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	115	414	0	ENST00000377967.4:c.2136_2137insG	p.Thr713AspfsTer17	p.T713Dfs*17	ENST00000377967	NM_021140.2	712	-/G																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0035552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	295	451	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270593	98270595	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs756897237		P-0035552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	10	60	0	ENST00000331920.6:c.49_51del	p.Gly17del	p.G17del	ENST00000331920	NM_000264.3	17	GGC/-																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713544	30713546	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0035552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	118	383	0	ENST00000359013.4:c.946_948del	p.Lys316del	p.K316del	ENST00000359013	NM_001024847.2	315	gAGAag/gag																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1181	258	1038	0	ENST00000374672.4:c.1225A>G	p.Lys409Glu	p.K409E	ENST00000374672	NM_004235.4	409	Aag/Gag																																																																															
MSI1	4440	MSKCC	GRCh37	12	120784089	120784089	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1265704785		P-0035552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	232	916	1	ENST00000257552.2:c.896C>T	p.Ser299Leu	p.S299L	ENST00000257552	NM_002442.3	299	tCg/tTg																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14303236	14303236	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782047286		P-0035552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	162	673	1	ENST00000256196.4:c.439C>T	p.Arg147Trp	p.R147W	ENST00000256196		147	Cgg/Tgg																																																																															
RB1	5925	MSKCC	GRCh37	13	48881478	48881478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	66	306	1	ENST00000267163.4:c.200C>T	p.Pro67Leu	p.P67L	ENST00000267163	NM_000321.2	67	cCa/cTa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492802	56492802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	327	559	0	ENST00000407977.2:c.137C>G	p.Ala46Gly	p.A46G	ENST00000407977		46	gCt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs863224499		P-0035586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	83	623	0	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
NCOR1	9611	MSKCC	GRCh37	17	15989600	15989600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	37	272	0	ENST00000268712.3:c.3173C>T	p.Ser1058Leu	p.S1058L	ENST00000268712	NM_006311.3	1058	tCa/tTa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120255	70120278	+	inframe_deletion	In_Frame_Del	DEL	CTACAGCCCCTTCAACCTCCCACA	CTACAGCCCCTTCAACCTCCCACA	-			P-0035586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	108	838	0	ENST00000245479.2:c.1268_1291del	p.Phe423_Pro430del	p.F423_P430del	ENST00000245479	NM_000346.3	419	gcCTACAGCCCCTTCAACCTCCCACAc/gcc																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379622	17379622	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1267028244		P-0035586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	21	334	0	ENST00000359435.4:c.7G>A	p.Val3Met	p.V3M	ENST00000359435	NM_001033549.1	3	Gtg/Atg																																																																															
ALK	238	MSKCC	GRCh37	2	30143113	30143113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	71	620	0	ENST00000389048.3:c.413C>A	p.Ala138Asp	p.A138D	ENST00000389048	NM_004304.4	138	gCc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112174201	112174201	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	59	329	0	ENST00000257430.4:c.2910del	p.Ser970ArgfsTer10	p.S970Rfs*10	ENST00000257430	NM_000038.5	970	agT/ag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522328	157522328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs542516057		P-0035586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	83	763	0	ENST00000346085.5:c.4600C>T	p.Arg1534Cys	p.R1534C	ENST00000346085	NM_020732.3	1534	Cgc/Tgc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0035591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	224	428	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
CBFB	865	MSKCC	GRCh37	16	67070577	67070577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	116	254	1	ENST00000412916.2:c.201G>T	p.Gln67His	p.Q67H	ENST00000412916		67	caG/caT																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16012172	16012172	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	188	461	0	ENST00000268712.3:c.2110del	p.Ser704ProfsTer64	p.S704Pfs*64	ENST00000268712	NM_006311.3	704	Tcc/cc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40485925	40485926	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	225	585	0	ENST00000264657.5:c.939dup	p.Arg314Ter	p.R314*	ENST00000264657	NM_139276.2	313	-/T																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89156987	89156987	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0035591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	54	363	0	ENST00000336596.2:c.88+1G>A		p.X30_splice	ENST00000336596	NM_005233.5	30																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0035619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	135	605	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517202		P-0035619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	47	407	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																															
BCL6	604	MSKCC	GRCh37	3	187446313	187446313	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137878288		P-0035619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	75	594	0	ENST00000232014.4:c.1375C>T	p.Arg459Cys	p.R459C	ENST00000232014	NM_001130845.1	459	Cgc/Tgc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391881	139391881	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1307220376		P-0035619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	84	568	0	ENST00000277541.6:c.6310C>T	p.Arg2104Cys	p.R2104C	ENST00000277541	NM_017617.3	2104	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0035619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	35	387	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086076	16086076	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760647298		P-0035619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	70	540	0	ENST00000281043.3:c.1252G>A	p.Ala418Thr	p.A418T	ENST00000281043	NM_005378.4	418	Gcc/Acc																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111907654	111907654	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141962978		P-0035619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	100	447	0	ENST00000393256.3:c.428G>A	p.Arg143His	p.R143H	ENST00000393256	NM_006538.4	143	cGc/cAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29685515	29685516	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	62	339	0	ENST00000358273.4:c.7989dup	p.Lys2664Ter	p.K2664*	ENST00000358273	NM_001042492.2	2663	tct/tcTt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65349020	65349020	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754991396		P-0035619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	97	462	0	ENST00000342505.4:c.145C>T	p.Arg49Trp	p.R49W	ENST00000342505	NM_002227.2	49	Cgg/Tgg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851903	63851903	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776160603		P-0035619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	63	482	4	ENST00000279873.7:c.2681C>T	p.Ser894Leu	p.S894L	ENST00000279873	NM_032199.2	894	tCg/tTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641054	3641054	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143558209		P-0035619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	129	813	0	ENST00000294008.3:c.2585G>A	p.Arg862Gln	p.R862Q	ENST00000294008	NM_032444.2	862	cGa/cAa																																																																															
CDH1	999	MSKCC	GRCh37	16	68853277	68853277	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	112	540	0	ENST00000261769.5:c.1660G>T	p.Glu554Ter	p.E554*	ENST00000261769	NM_004360.3	554	Gag/Tag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81957192	81957192	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1216454496		P-0035619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	55	524	0	ENST00000359376.3:c.2410G>A	p.Gly804Arg	p.G804R	ENST00000359376	NM_002661.3	804	Ggg/Agg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419875	152419875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	47	495	0	ENST00000206249.3:c.1562G>T	p.Gly521Val	p.G521V	ENST00000206249	NM_000125.3	521	gGc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	221	535	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231437	46231437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	91	435	0	ENST00000334344.6:c.1277C>T	p.Thr426Met	p.T426M	ENST00000334344	NM_152641.2	426	aCg/aTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68847333	68847333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	287	506	0	ENST00000261769.5:c.1255G>A	p.Asp419Asn	p.D419N	ENST00000261769	NM_004360.3	419	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	379	740	1	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs45476696		P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	369	689	0	ENST00000304494.5:c.457G>T	p.Asp153Tyr	p.D153Y	ENST00000304494	NM_000077.4	153	Gac/Tac																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949125	71949125	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745724027		P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	151	745	1	ENST00000298229.2:c.3592G>A	p.Glu1198Lys	p.E1198K	ENST00000298229	NM_001567.3	1198	Gag/Aag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469629	25469629	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750837407		P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	67	591	2	ENST00000264709.3:c.1139C>T	p.Ala380Val	p.A380V	ENST00000264709	NM_175629.2	380	gCg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212581	36212581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	212	865	1	ENST00000222270.7:c.2332G>A	p.Ala778Thr	p.A778T	ENST00000222270	NM_014727.1	778	Gcg/Acg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11168242	11168242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	199	552	0	ENST00000361445.4:c.7630G>T	p.Gly2544Cys	p.G2544C	ENST00000361445	NM_004958.3	2544	Ggc/Tgc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46511672	46511672	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	82	643	0	ENST00000262741.5:c.1105G>T	p.Glu369Ter	p.E369*	ENST00000262741	NM_003629.3	369	Gag/Tag																																																																															
RET	5979	MSKCC	GRCh37	10	43615613	43615613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	44	474	0	ENST00000355710.3:c.2692G>A	p.Asp898Asn	p.D898N	ENST00000355710	NM_020975.4	898	Gat/Aat																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342983	118342983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	27	239	0	ENST00000534358.1:c.1109C>A	p.Thr370Asn	p.T370N	ENST00000534358	NM_005933.3	370	aCc/aAc																																																																															
CBL	867	MSKCC	GRCh37	11	119148501	119148501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	168	442	0	ENST00000264033.4:c.1042G>T	p.Asp348Tyr	p.D348Y	ENST00000264033	NM_005188.3	348	Gat/Tat																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18762537	18762537	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	151	373	0	ENST00000266497.5:c.4033A>C	p.Ile1345Leu	p.I1345L	ENST00000266497		1345	Ata/Cta																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49415566	49415566	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	74	365	0	ENST00000301067.7:c.16611C>A	p.Asn5537Lys	p.N5537K	ENST00000301067	NM_003482.3	5537	aaC/aaA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424113	49424114	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	78	769	0	ENST00000301067.7:c.13948_13949insT	p.Glu4650ValfsTer12	p.E4650Vfs*12	ENST00000301067	NM_003482.3	4650	gag/gTag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435483	49435483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	139	634	0	ENST00000301067.7:c.6189G>T	p.Lys2063Asn	p.K2063N	ENST00000301067	NM_003482.3	2063	aaG/aaT																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432048	121432048	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	95	768	0	ENST00000257555.6:c.795C>A	p.Tyr265Ter	p.Y265*	ENST00000257555		265	taC/taA																																																																															
POLE	5426	MSKCC	GRCh37	12	133208923	133208924	+	missense_variant	Missense_Mutation	DNP	TC	TC	AT			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	115	520	2	ENST00000320574.5:c.6307_6308delinsAT	p.Glu2103Met	p.E2103M	ENST00000320574	NM_006231.2	2103	GAg/ATg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30102088	30102088	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	132	492	0	ENST00000331968.5:c.1379G>T	p.Ser460Ile	p.S460I	ENST00000331968	NM_002742.2	460	aGc/aTc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95566220	95566220	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs767112987		P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	63	528	1	ENST00000343455.3:c.4103G>T	p.Arg1368Leu	p.R1368L	ENST00000343455	NM_177438.2	1368	cGc/cTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827169	72827169	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	63	461	0	ENST00000268489.5:c.9412A>C	p.Thr3138Pro	p.T3138P	ENST00000268489	NM_006885.3	3138	Act/Cct																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604707	48604707	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs377767371		P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	50	389	0	ENST00000342988.3:c.1529G>T	p.Gly510Val	p.G510V	ENST00000342988	NM_005359.5	510	gGa/gTa																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4110507	4110507	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	67	401	0	ENST00000262948.5:c.450G>T	p.Met150Ile	p.M150I	ENST00000262948	NM_030662.3	150	atG/atT																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256700	19256700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	137	537	0	ENST00000162023.5:c.1013C>T	p.Pro338Leu	p.P338L	ENST00000162023		338	cCc/cTc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47127780	47127780	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	167	420	0	ENST00000409792.3:c.5302A>G	p.Lys1768Glu	p.K1768E	ENST00000409792	NM_014159.6	1768	Aag/Gag																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119720921	119720921	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	53	491	0	ENST00000316626.5:c.254A>T	p.Lys85Met	p.K85M	ENST00000316626		85	aAg/aTg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200005	128200005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	53	627	1	ENST00000341105.2:c.1300G>T	p.Ala434Ser	p.A434S	ENST00000341105	NM_032638.4	434	Gct/Tct																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138433508	138433508	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	54	441	0	ENST00000289153.2:c.1104C>G	p.Ile368Met	p.I368M	ENST00000289153	NM_006219.2	368	atC/atG																																																																															
KDR	3791	MSKCC	GRCh37	4	55955922	55955922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	106	508	0	ENST00000263923.4:c.3240A>T	p.Arg1080Ser	p.R1080S	ENST00000263923	NM_002253.2	1080	agA/agT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467454	66467455	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	49	297	0	ENST00000273854.3:c.814_815delinsAA	p.Pro272Asn	p.P272N	ENST00000273854	NM_004439.5	272	CCc/AAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510059	187510059	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	44	422	0	ENST00000441802.2:c.13454A>C	p.Asn4485Thr	p.N4485T	ENST00000441802	NM_005245.3	4485	aAc/aCc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187530997	187530997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	83	492	0	ENST00000441802.2:c.10026del	p.Val3343SerfsTer33	p.V3343Sfs*33	ENST00000441802	NM_005245.3	3342	acA/ac																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38952498	38952498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	29	301	1	ENST00000357387.3:c.2927C>T	p.Ala976Val	p.A976V	ENST00000357387	NM_152756.3	976	gCt/gTt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176665508	176665508	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	159	381	0	ENST00000439151.2:c.4192G>T	p.Gly1398Ter	p.G1398*	ENST00000439151	NM_022455.4	1398	Gga/Tga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176696808	176696808	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	18	217	0	ENST00000439151.2:c.5509G>C	p.Ala1837Pro	p.A1837P	ENST00000439151	NM_022455.4	1837	Gct/Cct																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004544	150004544	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	305	698	0	ENST00000253339.5:c.1681A>T	p.Lys561Ter	p.K561*	ENST00000253339		561	Aaa/Taa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419904	152419904	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	63	508	0	ENST00000206249.3:c.1591A>C	p.Lys531Gln	p.K531Q	ENST00000206249	NM_000125.3	531	Aag/Cag																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729960	41729960	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	138	589	1	ENST00000242208.4:c.569A>C	p.Glu190Ala	p.E190A	ENST00000242208	NM_002192.2	190	gAa/gCa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467850	50467850	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	182	338	0	ENST00000331340.3:c.1085A>G	p.Asn362Ser	p.N362S	ENST00000331340	NM_006060.4	362	aAc/aGc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467988	50467988	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	124	352	0	ENST00000331340.3:c.1223G>C	p.Arg408Pro	p.R408P	ENST00000331340	NM_006060.4	408	cGc/cCc																																																																															
HGF	3082	MSKCC	GRCh37	7	81355239	81355239	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	104	323	0	ENST00000222390.5:c.1135C>G	p.Gln379Glu	p.Q379E	ENST00000222390	NM_000601.4	379	Caa/Gaa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508883	106508883	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	37	384	0	ENST00000359195.3:c.877G>C	p.Val293Leu	p.V293L	ENST00000359195	NM_002649.2	293	Gtg/Ctg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151880087	151880087	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	77	546	0	ENST00000262189.6:c.5237A>T	p.Glu1746Val	p.E1746V	ENST00000262189	NM_170606.2	1746	gAa/gTa																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5549436	5549436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	76	623	1	ENST00000397747.3:c.463T>C	p.Trp155Arg	p.W155R	ENST00000397747	NM_025239.3	155	Tgg/Cgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C	rs786201057		P-0035779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	318	630	0	ENST00000269305.4:c.374C>G	p.Thr125Arg	p.T125R	ENST00000269305	NM_001126112.2	125	aCg/aGg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458418	120458452	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCTGGAAAGTCACAATGGGGGGCAAGGGCTCCC	GAGCTGGAAAGTCACAATGGGGGGCAAGGGCTCCC	-			P-0035779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	808	699	0	ENST00000256646.2:c.6893_6927del	p.Arg2298HisfsTer3	p.R2298Hfs*3	ENST00000256646	NM_024408.3	2298	cGGGAGCCCTTGCCCCCCATTGTGACTTTCCAGCTC/c																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589744	69589744	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	15	120	0	ENST00000168712.1:c.109G>T	p.Gly37Cys	p.G37C	ENST00000168712	NM_002007.2	37	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	326	1159	2	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602488	10602488	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1397945617		P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	197	947	0	ENST00000171111.5:c.1090G>T	p.Gly364Cys	p.G364C	ENST00000171111	NM_203500.1	364	Ggc/Tgc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085656	16085656	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201115523		P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	179	723	0	ENST00000281043.3:c.832G>A	p.Asp278Asn	p.D278N	ENST00000281043	NM_005378.4	278	Gac/Aac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916788	178916788	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1266632047		P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	184	487	0	ENST00000263967.3:c.175C>T	p.His59Tyr	p.H59Y	ENST00000263967	NM_006218.2	59	Cat/Tat																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081573	143081573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	224	744	0	ENST00000262992.4:c.1501C>T	p.Pro501Ser	p.P501S	ENST00000262992	NM_001101669.1	501	Ccc/Tcc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47142964	47142964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	168	440	0	ENST00000409792.3:c.4999C>G	p.Gln1667Glu	p.Q1667E	ENST00000409792	NM_014159.6	1667	Cag/Gag																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430557	78430557	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	151	452	1	ENST00000370768.2:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000370768	NM_003902.3	245	Caa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425664	49425664	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	212	810	0	ENST00000301067.7:c.12824A>G	p.Gln4275Arg	p.Q4275R	ENST00000301067	NM_003482.3	4275	cAg/cGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434378	49434378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	307	976	1	ENST00000301067.7:c.7175C>T	p.Pro2392Leu	p.P2392L	ENST00000301067	NM_003482.3	2392	cCt/cTt																																																																															
POLE	5426	MSKCC	GRCh37	12	133240963	133240963	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	208	800	0	ENST00000320574.5:c.2554C>T	p.Gln852Ter	p.Q852*	ENST00000320574	NM_006231.2	852	Cag/Tag																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001934	29001934	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	218	596	1	ENST00000282397.4:c.1231C>A	p.Gln411Lys	p.Q411K	ENST00000282397	NM_002019.4	411	Cag/Aag																																																																															
DICER1	23405	MSKCC	GRCh37	14	95571433	95571433	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	124	291	0	ENST00000343455.3:c.3244G>T	p.Val1082Phe	p.V1082F	ENST00000343455	NM_177438.2	1082	Gtc/Ttc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679173	88679173	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	217	695	2	ENST00000360948.2:c.864C>A	p.Asn288Lys	p.N288K	ENST00000360948	NM_001012338.2	288	aaC/aaA																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2647264	2647264	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1291358013		P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	200	717	0	ENST00000342085.4:c.1542C>G	p.Phe514Leu	p.F514L	ENST00000342085	NM_002613.4	514	ttC/ttG																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858417	9858417	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	216	680	1	ENST00000330684.3:c.2984C>A	p.Thr995Lys	p.T995K	ENST00000330684	NM_001134407.1	995	aCg/aAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827301	72827301	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	240	938	0	ENST00000268489.5:c.9280G>T	p.Ala3094Ser	p.A3094S	ENST00000268489	NM_006885.3	3094	Gca/Tca																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16068447	16068447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	16	136	0	ENST00000268712.3:c.464C>A	p.Ala155Asp	p.A155D	ENST00000268712	NM_006311.3	155	gCt/gAt																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804307	46804307	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	59	967	0	ENST00000290295.7:c.700G>C	p.Glu234Gln	p.E234Q	ENST00000290295	NM_006361.5	234	Gag/Cag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438235	56438235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	52	897	0	ENST00000407977.2:c.758G>A	p.Arg253Lys	p.R253K	ENST00000407977		253	aGg/aAg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59861731	59861731	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	238	458	0	ENST00000259008.2:c.1528A>T	p.Lys510Ter	p.K510*	ENST00000259008	NM_032043.2	510	Aaa/Taa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220378	1220378	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	296	966	0	ENST00000326873.7:c.471C>G	p.Phe157Leu	p.F157L	ENST00000326873	NM_000455.4	157	ttC/ttG																																																																															
CENPA	1058	MSKCC	GRCh37	2	27016119	27016119	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	217	613	0	ENST00000335756.4:c.395T>A	p.Ile132Asn	p.I132N	ENST00000335756	NM_001809.3	132	aTc/aAc																																																																															
CENPA	1058	MSKCC	GRCh37	2	27016121	27016122	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	180	597	0	ENST00000335756.4:c.401dup	p.Leu135ProfsTer2	p.L135Pfs*2	ENST00000335756	NM_001809.3	133	cgg/cGgg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128044330	128044330	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	213	768	0	ENST00000285398.2:c.1291A>G	p.Lys431Glu	p.K431E	ENST00000285398	NM_000122.1	431	Aag/Gag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248579	212248579	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	281	759	0	ENST00000342788.4:c.3688C>A	p.Pro1230Thr	p.P1230T	ENST00000342788	NM_005235.2	1230	Cca/Aca																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212252683	212252683	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs766441342		P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	88	170	0	ENST00000342788.4:c.3170C>A	p.Thr1057Asn	p.T1057N	ENST00000342788	NM_005235.2	1057	aCc/aAc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225368461	225368462	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	185	464	0	ENST00000264414.4:c.1284dup	p.Glu429Ter	p.E429*	ENST00000264414	NM_003590.4	428	-/T																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867502	35867502	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	95	293	0	ENST00000303115.3:c.316A>T	p.Asn106Tyr	p.N106Y	ENST00000303115	NM_002185.3	106	Aat/Tat																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867560	35867560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	70	205	0	ENST00000303115.3:c.374C>T	p.Thr125Ile	p.T125I	ENST00000303115	NM_002185.3	125	aCt/aTt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131895004	131895004	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	45	265	0	ENST00000265335.6:c.158G>T	p.Cys53Phe	p.C53F	ENST00000265335		53	tGt/tTt																																																																															
FYN	2534	MSKCC	GRCh37	6	112024205	112024205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	131	470	0	ENST00000368678.4:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000368678		194	Gat/Tat																																																																															
FYN	2534	MSKCC	GRCh37	6	112024214	112024214	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	119	447	0	ENST00000368678.4:c.571G>C	p.Asp191His	p.D191H	ENST00000368678		191	Gat/Cat																																																																															
ROS1	6098	MSKCC	GRCh37	6	117684019	117684019	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	207	450	0	ENST00000368508.3:c.3128C>T	p.Ala1043Val	p.A1043V	ENST00000368508	NM_002944.2	1043	gCa/gTa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005306	150005306	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	232	714	0	ENST00000253339.5:c.919A>T	p.Thr307Ser	p.T307S	ENST00000253339		307	Act/Tct																																																																															
NBN	4683	MSKCC	GRCh37	8	90971075	90971075	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	272	336	0	ENST00000265433.3:c.1002G>C	p.Lys334Asn	p.K334N	ENST00000265433	NM_002485.4	334	aaG/aaC																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8517947	8517947	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	194	542	0	ENST00000356435.5:c.1444T>G	p.Leu482Val	p.L482V	ENST00000356435		482	Tta/Gta																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226186	53226186	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs375850872		P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	227	438	0	ENST00000375401.3:c.2663G>T	p.Arg888Leu	p.R888L	ENST00000375401	NM_004187.3	888	cGt/cTt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482437	56482437	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	107	564	0	ENST00000267101.3:c.985A>G	p.Lys329Glu	p.K329E	ENST00000267101	NM_001982.3	329	Aaa/Gaa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637689	52637689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	54	547	0	ENST00000394830.3:c.2627G>A	p.Arg876His	p.R876H	ENST00000394830	NM_018313.4	876	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175372	112175372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	102	278	0	ENST00000257430.4:c.4081C>T	p.Pro1361Ser	p.P1361S	ENST00000257430	NM_000038.5	1361	Ccc/Tcc																																																																															
APC	324	MSKCC	GRCh37	5	112175093	112175093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	84	244	0	ENST00000257430.4:c.3802C>T	p.Pro1268Ser	p.P1268S	ENST00000257430	NM_000038.5	1268	Cca/Tca																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661120	227661120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	143	659	1	ENST00000305123.5:c.2335G>A	p.Glu779Lys	p.E779K	ENST00000305123	NM_005544.2	779	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112174053	112174053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	125	375	0	ENST00000257430.4:c.2762C>T	p.Ala921Val	p.A921V	ENST00000257430	NM_000038.5	921	gCa/gTa																																																																															
APC	324	MSKCC	GRCh37	5	112174558	112174558	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs757020768		P-0035867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	152	383	0	ENST00000257430.4:c.3267C>G	p.Phe1089Leu	p.F1089L	ENST00000257430	NM_000038.5	1089	ttC/ttG																																																																															
APC	324	MSKCC	GRCh37	5	112174973	112174973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	83	264	0	ENST00000257430.4:c.3682C>G	p.Gln1228Glu	p.Q1228E	ENST00000257430	NM_000038.5	1228	Cag/Gag																																																																															
APC	324	MSKCC	GRCh37	5	112175046	112175046	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	81	226	0	ENST00000257430.4:c.3755C>G	p.Ser1252Cys	p.S1252C	ENST00000257430	NM_000038.5	1252	tCt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112175370	112175370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	104	273	0	ENST00000257430.4:c.4079C>T	p.Ser1360Phe	p.S1360F	ENST00000257430	NM_000038.5	1360	tCt/tTt																																																																															
APC	324	MSKCC	GRCh37	5	112175466	112175466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	186	407	0	ENST00000257430.4:c.4175C>T	p.Ser1392Leu	p.S1392L	ENST00000257430	NM_000038.5	1392	tCa/tTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	107	586	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0035926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	337	642	1	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884864	134884864	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1257672576		P-0035926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	135	564	0	ENST00000398015.3:c.1640C>T	p.Ala547Val	p.A547V	ENST00000398015	NM_004441.4	547	gCg/gTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502244	157502244	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370283707		P-0035926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	255	469	2	ENST00000346085.5:c.3277G>A	p.Val1093Met	p.V1093M	ENST00000346085	NM_020732.3	1093	Gtg/Atg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911641	114911642	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GG			P-0035926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	35	392	0	ENST00000543371.1:c.1161_1161+1dup		p.R387fs	ENST00000543371	NM_001198531.1	387	agg/aGGgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29652947	29652947	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770124316		P-0035926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	105	524	0	ENST00000358273.4:c.4945G>A	p.Gly1649Arg	p.G1649R	ENST00000358273	NM_001042492.2	1649	Ggg/Agg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850900	63850900	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	94	371	0	ENST00000279873.7:c.1678A>C	p.Ser560Arg	p.S560R	ENST00000279873	NM_032199.2	560	Agc/Cgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	113	391	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	130	535	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089730	27089730	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	146	431	1	ENST00000324856.7:c.2686G>T	p.Glu896Ter	p.E896*	ENST00000324856	NM_006015.4	896	Gaa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912173	114912173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	91	379	0	ENST00000543371.1:c.1243C>T	p.Pro415Ser	p.P415S	ENST00000543371	NM_001198531.1	415	Ccc/Tcc																																																																															
APC	324	MSKCC	GRCh37	5	112175770	112175770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	42	207	0	ENST00000257430.4:c.4480del	p.Glu1494LysfsTer13	p.E1494Kfs*13	ENST00000257430	NM_000038.5	1493	acG/ac																																																																															
SPEN	23013	MSKCC	GRCh37	1	16237635	16237635	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	140	362	0	ENST00000375759.3:c.1082A>T	p.Lys361Ile	p.K361I	ENST00000375759	NM_015001.2	361	aAa/aTa																																																																															
CDK4	1019	MSKCC	GRCh37	12	58144438	58144438	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	19	210	0	ENST00000257904.6:c.632+1G>A		p.X211_splice	ENST00000257904	NM_000075.3	211																																																																																
RAD51D	5892	MSKCC	GRCh37	17	33428225	33428225	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs750621215		P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	64	341	0	ENST00000335858.7:c.562C>T	p.Arg188Ter	p.R188*	ENST00000335858	NM_133629.2	188	Cga/Tga																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763503	59763503	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	109	427	0	ENST00000259008.2:c.2599C>T	p.Gln867Ter	p.Q867*	ENST00000259008	NM_032043.2	867	Cag/Tag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285123	15285123	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	60	676	1	ENST00000263388.2:c.4492C>A	p.Leu1498Met	p.L1498M	ENST00000263388	NM_000435.2	1498	Ctg/Atg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71090611	71090611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	126	409	0	ENST00000318789.4:c.737G>A	p.Gly246Asp	p.G246D	ENST00000318789	NM_032682.5	246	gGc/gAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916855	178916855	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	117	555	1	ENST00000263967.3:c.242A>T	p.Glu81Val	p.E81V	ENST00000263967	NM_006218.2	81	gAa/gTa																																																																															
APC	324	MSKCC	GRCh37	5	112151286	112151286	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	52	239	0	ENST00000257430.4:c.930del	p.Lys311ArgfsTer25	p.K311Rfs*25	ENST00000257430	NM_000038.5	310	aCc/ac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039291	47039291	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	151	587	0	ENST00000329236.7:c.683G>C	p.Arg228Pro	p.R228P	ENST00000329236	NM_001204466.1	228	cGc/cCc																																																																															
APC	324	MSKCC	GRCh37	5	112175771	112175771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	45	204	0	ENST00000257430.4:c.4480G>A	p.Glu1494Lys	p.E1494K	ENST00000257430	NM_000038.5	1494	Gaa/Aaa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519972		P-0036170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	172	679	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																															
JAK1	3716	MSKCC	GRCh37	1	65321305	65321305	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368776025		P-0036170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	205	844	3	ENST00000342505.4:c.1535C>T	p.Ser512Leu	p.S512L	ENST00000342505	NM_002227.2	512	tCg/tTg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44941838	44941838	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	100	254	0	ENST00000377967.4:c.3163del	p.Ser1055ValfsTer28	p.S1055Vfs*28	ENST00000377967	NM_021140.2	1054	agA/ag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212537966	212537966	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	52	491	1	ENST00000342788.4:c.1639del	p.Glu547ArgfsTer106	p.E547Rfs*106	ENST00000342788	NM_005235.2	547	Gag/ag																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591104	67591115	+	inframe_deletion	In_Frame_Del	DEL	TTAAACCAGACC	TTAAACCAGACC	-			P-0036178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	263	350	0	ENST00000274335.5:c.1700_1711del	p.Lys567_Leu570del	p.K567_L570del	ENST00000274335		566	aTTAAACCAGACCtt/att																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023168	27023184	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGGCCCGGCGCGGA	GGCGGGCCCGGCGCGGA	-			P-0036178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	213	66	0	ENST00000324856.7:c.275_291del	p.Gly92AlafsTer13	p.G92Afs*13	ENST00000324856	NM_006015.4	92	GGCGGGCCCGGCGCGGAg/g																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206653830	206653830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	269	655	0	ENST00000367120.3:c.1381G>T	p.Ala461Ser	p.A461S	ENST00000367120	NM_014002.3	461	Gca/Tca																																																																															
BCL6	604	MSKCC	GRCh37	3	187444665	187444665	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs560242782		P-0036178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	259	441	0	ENST00000232014.4:c.1562A>G	p.Asn521Ser	p.N521S	ENST00000232014	NM_001130845.1	521	aAt/aGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115955	8115956	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	25	364	0	ENST00000346208.3:c.1305dup	p.Ser436LeufsTer71	p.S436Lfs*71	ENST00000346208		434	cac/caCc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	72	374	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0036261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	72	588	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0036261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	169	394	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355353	15355353	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201062276		P-0036261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	73	346	0	ENST00000263377.2:c.2270C>T	p.Pro757Leu	p.P757L	ENST00000263377	NM_058243.2	757	cCg/cTg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23614940	23614940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	97	407	0	ENST00000261584.4:c.3401C>T	p.Ser1134Phe	p.S1134F	ENST00000261584	NM_024675.3	1134	tCt/tTt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213962	36213962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	197	651	0	ENST00000222270.7:c.2788G>T	p.Ala930Ser	p.A930S	ENST00000222270	NM_014727.1	930	Gca/Tca																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499426	89499426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	85	478	1	ENST00000336596.2:c.2596A>C	p.Asn866His	p.N866H	ENST00000336596	NM_005233.5	866	Aac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	140	710	1	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221975	1221975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	74	679	0	ENST00000326873.7:c.890G>A	p.Arg297Lys	p.R297K	ENST00000326873	NM_000455.4	297	aGg/aAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76776364	76776364	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	76	256	1	ENST00000373344.5:c.7102C>T	p.Gln2368Ter	p.Q2368*	ENST00000373344	NM_000489.3	2368	Caa/Taa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131939630	131939630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	31	221	0	ENST00000265335.6:c.2416G>A	p.Glu806Lys	p.E806K	ENST00000265335		806	Gaa/Aaa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782404	9782405	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	47	750	1	ENST00000377346.4:c.2337_2338delinsAT	p.Asn780Tyr	p.N780Y	ENST00000377346	NM_005026.3	779	aaGAac/aaATac																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699313	117699313	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	85	583	0	ENST00000369458.3:c.328G>T	p.Val110Phe	p.V110F	ENST00000369458	NM_024626.3	110	Gtt/Ttt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95590636	95590636	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	67	389	0	ENST00000343455.3:c.1273G>T	p.Glu425Ter	p.E425*	ENST00000343455	NM_177438.2	425	Gaa/Taa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37672036	37672036	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	38	503	0	ENST00000447079.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000447079	NM_015083.1	941	Gaa/Taa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467116	25467116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	44	598	0	ENST00000264709.3:c.1759G>T	p.Gly587Trp	p.G587W	ENST00000264709	NM_175629.2	587	Ggg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40727189	40727189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	33	479	0	ENST00000373198.4:c.3775C>T	p.His1259Tyr	p.H1259Y	ENST00000373198	NM_133170.3	1259	Cac/Tac																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206141	36206738	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCCCATGGGCTGGGGGGACCTGCATTCTCTATTGATTTGCAAATAACACCCTTGATGTGATGACATCCATACATTTCAACTATTTCTTAATAATAAAAAAACACTAGATACAAAACCCACAAATAATCTGGCAATAGCGAGAACTTGAAACATCCCATCTTCACTTTGCTTGACGTGTGTGTGTGTGTGTGTCTGCGTGTGTGTCTTCAAGCCTAATGGGTAGGTAAAAAAATAGCATAGCCAAAGCTAACTCTTAAAAAATTCAAGAGAGCTATCTATCCAATATGGATATCCATACCCAGAGCTCCTCGTATCCTCTGTAGCAGTGCTTTTCCTTGTGGGGATCTGGTTACAATGCAGATCTGACTCGGTGGGTCTGGGGTGGGTGGGGCCCAAGACTCTGCATTTCCAACAGCTCCCAGGTGGTGCTGTTGGTTCGAGGCCTTTCTCTGAGCATCAAGGGGAAACCCCAGTTGGTCTGGGAAGGTGTGTGCACATGGGGGCCAGTTGTGGGTGGTGGCCCAGGTGCAGGAGAGGCGGGCAGTGGGCTCCATCTGGTACTTACCCTGCATCTGACTCTGAGGCTGAGGGTTAAAG	GCCCCATGGGCTGGGGGGACCTGCATTCTCTATTGATTTGCAAATAACACCCTTGATGTGATGACATCCATACATTTCAACTATTTCTTAATAATAAAAAAACACTAGATACAAAACCCACAAATAATCTGGCAATAGCGAGAACTTGAAACATCCCATCTTCACTTTGCTTGACGTGTGTGTGTGTGTGTGTCTGCGTGTGTGTCTTCAAGCCTAATGGGTAGGTAAAAAAATAGCATAGCCAAAGCTAACTCTTAAAAAATTCAAGAGAGCTATCTATCCAATATGGATATCCATACCCAGAGCTCCTCGTATCCTCTGTAGCAGTGCTTTTCCTTGTGGGGATCTGGTTACAATGCAGATCTGACTCGGTGGGTCTGGGGTGGGTGGGGCCCAAGACTCTGCATTTCCAACAGCTCCCAGGTGGTGCTGTTGGTTCGAGGCCTTTCTCTGAGCATCAAGGGGAAACCCCAGTTGGTCTGGGAAGGTGTGTGCACATGGGGGCCAGTTGTGGGTGGTGGCCCAGGTGCAGGAGAGGCGGGCAGTGGGCTCCATCTGGTACTTACCCTGCATCTGACTCTGAGGCTGAGGGTTAAAG	-			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	10	17	0	ENST00000300305.3:c.774_805+566del		p.X258_splice	ENST00000300305		258																																																																																
KIT	3815	MSKCC	GRCh37	4	55602737	55602737	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	92	511	0	ENST00000288135.5:c.2558G>C	p.Trp853Ser	p.W853S	ENST00000288135	NM_000222.2	853	tGg/tCg																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158469	26158469	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	114	654	0	ENST00000289316.2:c.72G>C	p.Lys24Asn	p.K24N	ENST00000289316	NM_138720.2	24	aaG/aaC																																																																															
SMO	6608	MSKCC	GRCh37	7	128846362	128846362	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	60	710	1	ENST00000249373.3:c.1198C>A	p.Arg400Ser	p.R400S	ENST00000249373	NM_005631.4	400	Cgt/Agt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0036349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	257	688	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519976		P-0036349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	233	951	0	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033245	69033245	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs530869739		P-0036349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	302	541	0	ENST00000288368.4:c.3685G>A	p.Val1229Ile	p.V1229I	ENST00000288368	NM_024870.2	1229	Gtc/Atc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37882870	37882870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	189	731	0	ENST00000269571.5:c.2928C>A	p.Phe976Leu	p.F976L	ENST00000269571		976	ttC/ttA																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437568	56437568	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	37	556	0	ENST00000407977.2:c.894T>G	p.Cys298Trp	p.C298W	ENST00000407977		298	tgT/tgG																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36217174	36217174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	191	813	0	ENST00000222270.7:c.3923C>T	p.Ala1308Val	p.A1308V	ENST00000222270	NM_014727.1	1308	gCa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577587	7577587	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	182	566	0	ENST00000269305.4:c.694A>T	p.Ile232Phe	p.I232F	ENST00000269305	NM_001126112.2	232	Atc/Ttc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0036368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	134	306	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0036368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	49	304	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715979	52715979	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786205227		P-0036368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	147	488	1	ENST00000322088.6:c.544C>T	p.Arg182Trp	p.R182W	ENST00000322088	NM_014225.5	182	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108128310	108128310	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778065		P-0036368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	88	311	1	ENST00000278616.4:c.2353C>T	p.Arg785Cys	p.R785C	ENST00000278616	NM_000051.3	785	Cgt/Tgt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21630741	21630741	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs748842496		P-0036368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	77	258	0	ENST00000421138.2:c.863A>T	p.Tyr288Phe	p.Y288F	ENST00000421138		288	tAt/tTt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964013	28964013	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	112	461	0	ENST00000282397.4:c.1889A>T	p.Asp630Val	p.D630V	ENST00000282397	NM_002019.4	630	gAt/gTt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37672016	37672016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	131	554	0	ENST00000447079.4:c.2801C>T	p.Pro934Leu	p.P934L	ENST00000447079	NM_015083.1	934	cCt/cTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	56	375	0	ENST00000263967.3:c.3062A>C	p.Tyr1021Ser	p.Y1021S	ENST00000263967	NM_006218.2	1021	tAc/tCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs104886003		P-0036378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	190	514	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0036378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	175	622	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838389	156838389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1357016517		P-0036378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	55	753	0	ENST00000524377.1:c.667G>A	p.Glu223Lys	p.E223K	ENST00000524377	NM_002529.3	223	Gag/Aag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2227019	2227019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	118	643	0	ENST00000398665.3:c.4499C>G	p.Ser1500Cys	p.S1500C	ENST00000398665	NM_032482.2	1500	tCt/tGt																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675071	40675071	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	63	621	0	ENST00000249776.8:c.35T>G	p.Val12Gly	p.V12G	ENST00000249776	NM_033286.3	12	gTt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112177488	112177488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	19	286	0	ENST00000257430.4:c.6197G>A	p.Arg2066Lys	p.R2066K	ENST00000257430	NM_000038.5	2066	aGa/aAa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028623	12028623	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	26	314	0	ENST00000353533.5:c.826G>T	p.Asp276Tyr	p.D276Y	ENST00000353533	NM_003010.3	276	Gac/Tac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120929	115120939	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGCCCGGTG	GGCGCCCGGTG	-			P-0036378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	135	457	0	ENST00000257566.3:c.67_77del	p.His23GlyfsTer84	p.H23Gfs*84	ENST00000257566	NM_016569.3	23	CACCGGGCGCCg/g																																																																															
POLE	5426	MSKCC	GRCh37	12	133226024	133226024	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	62	703	0	ENST00000320574.5:c.3873G>C	p.Lys1291Asn	p.K1291N	ENST00000320574	NM_006231.2	1291	aaG/aaC																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061385	38061385	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	95	592	0	ENST00000250448.2:c.604G>T	p.Asp202Tyr	p.D202Y	ENST00000250448	NM_004496.3	202	Gac/Tac																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30134383	30134383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	141	658	1	ENST00000263025.4:c.148G>A	p.Glu50Lys	p.E50K	ENST00000263025	NM_002746.2	50	Gag/Aag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15950277	15950277	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1325864679		P-0036378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	62	613	2	ENST00000268712.3:c.6667G>A	p.Asp2223Asn	p.D2223N	ENST00000268712	NM_006311.3	2223	Gac/Aac																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30325702	30325702	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	32	191	0	ENST00000322652.5:c.1900C>G	p.His634Asp	p.H634D	ENST00000322652	NM_015355.2	634	Cat/Gat																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589249	67589249	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	14	198	0	ENST00000274335.5:c.1237del	p.Leu413Ter	p.L413*	ENST00000274335		413	Cta/ta																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020880	26020880	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	37	279	0	ENST00000357647.3:c.163T>C	p.Tyr55His	p.Y55H	ENST00000357647	NM_003529.2	55	Tat/Cat																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900251	101900251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	100	314	0	ENST00000374994.4:c.685G>T	p.Val229Phe	p.V229F	ENST00000374994	NM_004612.2	229	Gtt/Ttt																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0036553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	143	321	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0036553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	206	621	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40979319	40979319	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1217327426		P-0036553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	170	533	1	ENST00000373198.4:c.1814C>T	p.Thr605Met	p.T605M	ENST00000373198	NM_133170.3	605	aCg/aTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42792016	42792017	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAAA			P-0036553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	51	534	0	ENST00000575354.2:c.824_827dup	p.Ser277GlufsTer39	p.S277Efs*39	ENST00000575354	NM_015125.3	274	cga/cGAAAga																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31383490	31383490	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	59	486	0	ENST00000328111.2:c.1287C>A	p.Ser429Arg	p.S429R	ENST00000328111	NM_006892.3	429	agC/agA																																																																															
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	33	407	1	ENST00000288319.7:c.1211C>A	p.Pro404Gln	p.P404Q	ENST00000288319	NM_182918.3	404	cCg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900135	151900171	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTGCTCACTCCAGCCTGAAACAACAGTCACATTTAT	ACTGCTCACTCCAGCCTGAAACAACAGTCACATTTAT	-			P-0036553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	41	279	0	ENST00000262189.6:c.3962-22_3976del		p.X1321_splice	ENST00000262189	NM_170606.2	1321																																																																																
BIRC3	330	MSKCC	GRCh37	11	102198835	102198835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	63	354	0	ENST00000263464.3:c.1006G>T	p.Ala336Ser	p.A336S	ENST00000263464	NM_001165.4	336	Gcc/Tcc																																																																															
MGA	23269	MSKCC	GRCh37	15	41961970	41961970	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	132	408	1	ENST00000219905.7:c.878G>T	p.Arg293Leu	p.R293L	ENST00000219905	NM_001164273.1	293	cGt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	391	684	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098806	178098806	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	378	617	0	ENST00000397062.3:c.239C>G	p.Thr80Arg	p.T80R	ENST00000397062	NM_006164.4	80	aCa/aGa																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430393	181430393	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	245	575	0	ENST00000325404.1:c.245T>C	p.Leu82Ser	p.L82S	ENST00000325404	NM_003106.3	82	tTg/tCg																																																																															
TET2	54790	MSKCC	GRCh37	4	106158118	106158118	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	166	268	0	ENST00000380013.4:c.3019A>G	p.Thr1007Ala	p.T1007A	ENST00000380013	NM_001127208.2	1007	Act/Gct																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151917664	151917664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	110	392	1	ENST00000262189.6:c.3656C>T	p.Thr1219Ile	p.T1219I	ENST00000262189	NM_170606.2	1219	aCc/aTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409031	139409031	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	290	778	0	ENST00000277541.6:c.2138G>T	p.Cys713Phe	p.C713F	ENST00000277541	NM_017617.3	713	tGc/tTc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938567	44938567	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	78	386	0	ENST00000377967.4:c.3115C>T	p.Gln1039Ter	p.Q1039*	ENST00000377967	NM_021140.2	1039	Cag/Tag																																																																															
XIAP	331	MSKCC	GRCh37	X	123020163	123020163	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	118	691	0	ENST00000355640.3:c.651G>T	p.Trp217Cys	p.W217C	ENST00000355640		217	tgG/tgT																																																																															
PGR	5241	MSKCC	GRCh37	11	100998264	100998264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	58	244	0	ENST00000325455.5:c.1538C>A	p.Pro513His	p.P513H	ENST00000325455	NM_001202474.3	513	cCt/cAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152027728	152027728	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	237	735	0	ENST00000262189.6:c.347C>A	p.Ser116Ter	p.S116*	ENST00000262189	NM_170606.2	116	tCg/tAg																																																																															
CBL	867	MSKCC	GRCh37	11	119142542	119142542	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	138	395	0	ENST00000264033.4:c.541A>T	p.Ile181Phe	p.I181F	ENST00000264033	NM_005188.3	181	Att/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579574	7579575	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	183	643	0	ENST00000269305.4:c.112dup	p.Gln38ProfsTer5	p.Q38Pfs*5	ENST00000269305	NM_001126112.2	38	caa/cCaa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15943758	15943758	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	165	369	0	ENST00000268712.3:c.6730del	p.Ser2244GlnfsTer49	p.S2244Qfs*49	ENST00000268712	NM_006311.3	2244	Tca/ca																																																																															
TOP1	7150	MSKCC	GRCh37	20	39741455	39741455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	96	350	0	ENST00000361337.2:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000361337	NM_003286.2	448	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0036702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	455	317	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SYK	6850	MSKCC	GRCh37	9	93607878	93607878	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0036702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	101	347	0	ENST00000375746.1:c.578+2T>A		p.X193_splice	ENST00000375746	NM_001174167.1	193																																																																																
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0036726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	395	551	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2239	58	456	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0036726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	228	317	0	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81990417	81990417	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	72	406	0	ENST00000359376.3:c.3688G>T	p.Ala1230Ser	p.A1230S	ENST00000359376	NM_002661.3	1230	Gcc/Tcc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777747	3777747	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367899910		P-0036732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	82	934	0	ENST00000262367.5:c.7301C>T	p.Thr2434Met	p.T2434M	ENST00000262367	NM_004380.2	2434	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0036732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	385	663	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605102	46605102	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs540130771		P-0036732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	63	694	0	ENST00000263734.3:c.1319C>T	p.Thr440Met	p.T440M	ENST00000263734	NM_001430.4	440	aCg/aTg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719504	61719504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	376	555	0	ENST00000401558.2:c.1679A>G	p.Lys560Arg	p.K560R	ENST00000401558	NM_003400.3	560	aAa/aGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0036732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	184	522	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KIT	3815	MSKCC	GRCh37	4	55573291	55573291	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	24	345	0	ENST00000288135.5:c.953T>C	p.Met318Thr	p.M318T	ENST00000288135	NM_000222.2	318	aTg/aCg																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84388636	84388636	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	66	506	0	ENST00000321945.7:c.652A>G	p.Met218Val	p.M218V	ENST00000321945	NM_139076.2	218	Atg/Gtg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0036732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	141	487	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538178	187538178	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	171	553	0	ENST00000441802.2:c.9056A>G	p.Asn3019Ser	p.N3019S	ENST00000441802	NM_005245.3	3019	aAc/aGc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39074230	39074230	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	66	386	0	ENST00000357387.3:c.80C>G	p.Pro27Arg	p.P27R	ENST00000357387	NM_152756.3	27	cCg/cGg																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0036732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	212	360	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057599	180057599	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751885535		P-0036732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	493	860	0	ENST00000261937.6:c.356G>A	p.Arg119His	p.R119H	ENST00000261937	NM_182925.4	119	cGc/cAc																																																																															
MET	4233	MSKCC	GRCh37	7	116411877	116411899	+	splice_region_variant,intron_variant	Splice_Region	DEL	AGCTCTTTCTTTCTCTCTGTTTT	AGCTCTTTCTTTCTCTCTGTTTT	-			P-0036746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	122	869	0	ENST00000397752.3:c.2888-25_2888-3del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0036807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	356	619	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
RB1	5925	MSKCC	GRCh37	13	48941628	48941628	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0036807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	304	217	0	ENST00000267163.4:c.940-2A>G		p.X314_splice	ENST00000267163	NM_000321.2	314																																																																																
POLE	5426	MSKCC	GRCh37	12	133220467	133220467	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146711942		P-0036807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	153	560	1	ENST00000320574.5:c.4246G>A	p.Ala1416Thr	p.A1416T	ENST00000320574	NM_006231.2	1416	Gct/Act																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874542	155874542	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	264	574	0	ENST00000368323.3:c.217A>G	p.Ile73Val	p.I73V	ENST00000368323	NM_006912.5	73	Att/Gtt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18691119	18691119	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	197	437	0	ENST00000266497.5:c.3230A>T	p.Glu1077Val	p.E1077V	ENST00000266497		1077	gAg/gTg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32184963	32184963	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	46	610	0	ENST00000375023.3:c.1705C>A	p.Gln569Lys	p.Q569K	ENST00000375023	NM_004557.3	569	Cag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261523	16261523	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0036850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	351	487	0	ENST00000375759.3:c.8788A>T	p.Lys2930Ter	p.K2930*	ENST00000375759	NM_015001.2	2930	Aag/Tag																																																																															
MED12	9968	MSKCC	GRCh37	X	70346965	70346965	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	289	429	0	ENST00000374080.3:c.2832G>C	p.Met944Ile	p.M944I	ENST00000374080		944	atG/atC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	182	498	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NUF2	83540	MSKCC	GRCh37	1	163298694	163298694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	680	554	0	ENST00000271452.3:c.334C>T	p.Pro112Ser	p.P112S	ENST00000271452	NM_145697.2	112	Cca/Tca																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988334	36988334	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	134	414	1	ENST00000354822.5:c.319C>T	p.Gln107Ter	p.Q107*	ENST00000354822	NM_001079668.2	107	Cag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100971	41100971	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	90	551	0	ENST00000373198.4:c.1385T>C	p.Leu462Pro	p.L462P	ENST00000373198	NM_133170.3	462	cTc/cCc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747970	41747970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	53	135	0	ENST00000226382.2:c.799G>A	p.Gly267Arg	p.G267R	ENST00000226382	NM_003924.3	267	Ggg/Agg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0036887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	705	484	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578445	7578450	+	inframe_deletion	In_Frame_Del	DEL	ATGGCC	ATGGCC	-			P-0036887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	372	663	0	ENST00000269305.4:c.480_485del	p.Met160_Ala161del	p.M160_A161del	ENST00000269305	NM_001126112.2	160	atGGCCATc/atc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488730	212488730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	333	579	0	ENST00000342788.4:c.2119C>A	p.Gln707Lys	p.Q707K	ENST00000342788	NM_005235.2	707	Caa/Aaa																																																																															
WT1	7490	MSKCC	GRCh37	11	32421569	32421569	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	208	504	1	ENST00000332351.3:c.1023C>A	p.Ser341Arg	p.S341R	ENST00000332351	NM_024426.4	341	agC/agA																																																																															
XPO1	7514	MSKCC	GRCh37	2	61727007	61727007	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	63	509	0	ENST00000401558.2:c.431A>C	p.Lys144Thr	p.K144T	ENST00000401558	NM_003400.3	144	aAa/aCa																																																																															
BARD1	580	MSKCC	GRCh37	2	215593546	215593546	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	49	367	0	ENST00000260947.4:c.2188C>G	p.Gln730Glu	p.Q730E	ENST00000260947	NM_000465.2	730	Cag/Gag																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321361	1321361	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763768038		P-0036887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	129	456	0	ENST00000381566.1:c.394G>A	p.Asp132Asn	p.D132N	ENST00000381566		132	Gat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	167	307	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16001793	16001793	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0036893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	31	289	0	ENST00000268712.3:c.2708C>G	p.Ser903Ter	p.S903*	ENST00000268712	NM_006311.3	903	tCa/tGa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348849	89348849	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	56	399	0	ENST00000301030.4:c.4101G>C	p.Lys1367Asn	p.K1367N	ENST00000301030	NM_001256183.1	1367	aaG/aaC																																																																															
KDM5A	5927	MSKCC	GRCh37	12	495101	495101	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201821956		P-0036893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	34	309	0	ENST00000399788.2:c.205C>T	p.Arg69Cys	p.R69C	ENST00000399788	NM_001042603.1	69	Cgt/Tgt																																																																															
NF1	4763	MSKCC	GRCh37	17	29483100	29483100	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1060500330		P-0036893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	124	334	0	ENST00000358273.4:c.160G>T	p.Val54Phe	p.V54F	ENST00000358273	NM_001042492.2	54	Gtt/Ttt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187803	11187804	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0036893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	91	354	0	ENST00000361445.4:c.6093_6094delinsTT	p.Glu2032Ter	p.E2032*	ENST00000361445	NM_004958.3	2031	ctGGaa/ctTTaa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468423	120468423	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	95	333	0	ENST00000256646.2:c.4016G>T	p.Gly1339Val	p.G1339V	ENST00000256646	NM_024408.3	1339	gGg/gTg																																																																															
PARP1	142	MSKCC	GRCh37	1	226590028	226590028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	34	359	0	ENST00000366794.5:c.173G>A	p.Trp58Ter	p.W58*	ENST00000366794	NM_001618.3	58	tGg/tAg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18534803	18534803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	138	264	0	ENST00000266497.5:c.1861G>T	p.Val621Leu	p.V621L	ENST00000266497		621	Gtg/Ttg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32903615	32903615	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	46	372	0	ENST00000380152.3:c.667C>G	p.His223Asp	p.H223D	ENST00000380152		223	Cat/Gat																																																																															
EP300	2033	MSKCC	GRCh37	22	41572824	41572825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	45	370	0	ENST00000263253.7:c.5113dup	p.Met1705AsnfsTer10	p.M1705Nfs*10	ENST00000263253	NM_001429.3	1703	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131691026		P-0036920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	382	574	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	166	381	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
PRDM1	639	MSKCC	GRCh37	6	106554919	106554919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368754839		P-0036920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	142	440	0	ENST00000369096.4:c.2036G>A	p.Arg679His	p.R679H	ENST00000369096	NM_001198.3	679	cGt/cAt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44921958	44921958	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	29	246	0	ENST00000377967.4:c.1492C>A	p.Leu498Met	p.L498M	ENST00000377967	NM_021140.2	498	Ctg/Atg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31468154	31468154	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1226092566		P-0036960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	176	443	2	ENST00000344624.3:c.2258G>A	p.Arg753His	p.R753H	ENST00000344624		753	cGt/cAt																																																																															
ABL1	25	MSKCC	GRCh37	9	133750323	133750323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	64	469	0	ENST00000318560.5:c.1154G>A	p.Ser385Asn	p.S385N	ENST00000318560	NM_005157.4	385	aGc/aAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913399		P-0036970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	74	298	0	ENST00000349496.5:c.100G>C	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Cga																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868124	56868124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	150	487	3	ENST00000308159.5:c.1622C>T	p.Ser541Phe	p.S541F	ENST00000308159	NM_014669.4	541	tCc/tTc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933192	39933192	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	186	677	4	ENST00000378444.4:c.1407C>A	p.Ser469Arg	p.S469R	ENST00000378444	NM_001123385.1	469	agC/agA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55223600	55223600	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	54	412	0	ENST00000275493.2:c.967G>C	p.Val323Leu	p.V323L	ENST00000275493	NM_005228.3	323	Gtc/Ctc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123179180	123179180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	156	303	0	ENST00000218089.9:c.629C>T	p.Ser210Leu	p.S210L	ENST00000218089	NM_001042749.1	210	tCa/tTa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711990	89711990	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	126	428	0	ENST00000371953.3:c.609del	p.Pro204GlnfsTer17	p.P204Qfs*17	ENST00000371953	NM_000314.4	203	aTt/at																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279929	18279929	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	327	665	0	ENST00000222254.8:c.2012A>G	p.Tyr671Cys	p.Y671C	ENST00000222254	NM_005027.3	671	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0037044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	378	665	1	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579340	7579340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	120	640	0	ENST00000269305.4:c.347C>T	p.Ser116Phe	p.S116F	ENST00000269305	NM_001126112.2	116	tCt/tTt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633551	69633551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1886	100	226	0	ENST00000334134.2:c.151G>A	p.Ala51Thr	p.A51T	ENST00000334134	NM_005247.2	51	Gcc/Acc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376430	118376430	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	106	597	0	ENST00000534358.1:c.9823G>T	p.Gly3275Trp	p.G3275W	ENST00000534358	NM_005933.3	3275	Ggg/Tgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911675	32911675	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	95	675	1	ENST00000380152.3:c.3183G>T	p.Lys1061Asn	p.K1061N	ENST00000380152		1061	aaG/aaT																																																																															
PAX5	5079	MSKCC	GRCh37	9	36846865	36846865	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	79	456	0	ENST00000358127.4:c.1074G>C	p.Trp358Cys	p.W358C	ENST00000358127	NM_001280556.1	358	tgG/tgC																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0037120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	160	291	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	464	590	1	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120451	70120452	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0037120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1132	391	851	0	ENST00000245479.2:c.1455_1456del	p.Val486ProfsTer91	p.V486Pfs*91	ENST00000245479	NM_000346.3	485	GGg/g																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5258120	5258120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	248	670	0	ENST00000357368.4:c.614G>T	p.Ser205Ile	p.S205I	ENST00000357368	NM_002850.3	205	aGc/aTc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080325	5080325	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	76	289	0	ENST00000381652.3:c.2228T>C	p.Leu743Ser	p.L743S	ENST00000381652	NM_004972.3	743	tTg/tCg																																																																															
TEK	7010	MSKCC	GRCh37	9	27158045	27158045	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	367	582	0	ENST00000380036.4:c.269G>C	p.Arg90Thr	p.R90T	ENST00000380036	NM_000459.3	90	aGa/aCa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220400	1220400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	244	608	1	ENST00000326873.7:c.493G>A	p.Glu165Lys	p.E165K	ENST00000326873	NM_000455.4	165	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579533	7579533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	255	663	0	ENST00000269305.4:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000269305	NM_001126112.2	52	Caa/Taa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89845395	89845395	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	214	446	0	ENST00000389301.3:c.1732T>C	p.Tyr578His	p.Y578H	ENST00000389301	NM_000135.2	578	Tac/Cac																																																																															
FANCA	2175	MSKCC	GRCh37	16	89845397	89845398	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCTCCTGAATAT			P-0037146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	156	431	0	ENST00000389301.3:c.1717_1729dup	p.Pro577HisfsTer26	p.P577Hfs*26	ENST00000389301	NM_000135.2	577	cct/cATATTCAGGAGGCct																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56772535	56772535	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	403	374	0	ENST00000337432.4:c.389G>C	p.Gly130Ala	p.G130A	ENST00000337432	NM_058216.2	130	gGa/gCa																																																																															
TERT	7015	MSKCC	GRCh37	5	1282623	1282641	+	frameshift_variant	Frame_Shift_Del	DEL	TGACATAAAAGAAAGACCT	TGACATAAAAGAAAGACCT	-			P-0037146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	179	547	0	ENST00000310581.5:c.1672_1690del	p.Ser559ArgfsTer29	p.S559Rfs*29	ENST00000310581	NM_198253.2	558	AGGTCTTTCTTTTATGTCAcg/cg																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652095	36652103	+	inframe_deletion	In_Frame_Del	DEL	CTGCCCAAG	CTGCCCAAG	-			P-0037146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	113	538	0	ENST00000244741.5:c.219_227del	p.Pro74_Leu76del	p.P74_L76del	ENST00000244741	NM_000389.4	73	CTGCCCAAG/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0037180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	212	647	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	74	374	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946435	2946435	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751651073		P-0037180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	476	632	0	ENST00000396946.4:c.3302G>A	p.Arg1101His	p.R1101H	ENST00000396946	NM_032415.4	1101	cGc/cAc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30134512	30134512	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	29	243	0	ENST00000263025.4:c.19C>T	p.Gln7Ter	p.Q7*	ENST00000263025	NM_002746.2	7	Cag/Tag																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88651956	88651957	+	stop_gained	Nonsense_Mutation	DNP	GA	GA	TT			P-0037180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	58	374	0	ENST00000372037.3:c.303_304delinsTT	p.Met101_Lys102delinsIleTer	p.M101_K102delinsI*	ENST00000372037	NM_004329.2	101	atGAaa/atTTaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593391	48593391	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0037180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	59	304	0	ENST00000342988.3:c.1142T>C	p.Leu381Ser	p.L381S	ENST00000342988	NM_005359.5	381	tTg/tCg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004945	150004945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	145	443	0	ENST00000253339.5:c.1280C>G	p.Pro427Arg	p.P427R	ENST00000253339		427	cCt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0037339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	135	302	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881329	37881329	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	290	575	0	ENST00000269571.5:c.2521C>G	p.Leu841Val	p.L841V	ENST00000269571		841	Ctc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0037343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	648	758	0	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga																																																																															
RB1	5925	MSKCC	GRCh37	13	49039179	49039179	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	33	436	2	ENST00000267163.4:c.2257del	p.Ile753Ter	p.I753*	ENST00000267163	NM_000321.2	753	Ata/ta																																																																															
MED12	9968	MSKCC	GRCh37	X	70361799	70361799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	330	770	1	ENST00000374080.3:c.6475C>A	p.Gln2159Lys	p.Q2159K	ENST00000374080		2159	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578528	7578528	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	177	681	0	ENST00000269305.4:c.402T>G	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	ttT/ttG																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10283800	10283800	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143598088		P-0037389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	110	502	0	ENST00000340748.4:c.686C>T	p.Thr229Met	p.T229M	ENST00000340748		229	aCg/aTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41564525	41564526	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0037389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	50	391	0	ENST00000263253.7:c.3947_3948del	p.Pro1316ArgfsTer8	p.P1316Rfs*8	ENST00000263253	NM_001429.3	1316	cCT/c																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920413	114920413	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767830105		P-0037541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	127	578	0	ENST00000543371.1:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000543371	NM_001198531.1	452	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs587780074		P-0037541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	100	677	1	ENST00000269305.4:c.737T>G	p.Met246Arg	p.M246R	ENST00000269305	NM_001126112.2	246	aTg/aGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579722	7579722	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0037541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	94	554	0	ENST00000269305.4:c.75-1G>A		p.X25_splice	ENST00000269305	NM_001126112.2	25																																																																																
APC	324	MSKCC	GRCh37	5	112174291	112174291	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	125	347	0	ENST00000257430.4:c.3002del	p.Pro1001GlnfsTer4	p.P1001Qfs*4	ENST00000257430	NM_000038.5	1000	taC/ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0037571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	84	825	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79966025	79966025	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763873895		P-0037571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	40	497	0	ENST00000265081.6:c.689C>T	p.Thr230Met	p.T230M	ENST00000265081	NM_002439.4	230	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	121	793	0	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602329	10602329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	134	800	0	ENST00000171111.5:c.1249G>T	p.Gly417Trp	p.G417W	ENST00000171111	NM_203500.1	417	Ggg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108236109	108236109	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	105	597	0	ENST00000278616.4:c.9045G>C	p.Glu3015Asp	p.E3015D	ENST00000278616	NM_000051.3	3015	gaG/gaC																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643510	52643510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	40	587	0	ENST00000394830.3:c.2386G>A	p.Glu796Lys	p.E796K	ENST00000394830	NM_018313.4	796	Gag/Aag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162741912	162741912	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	46	424	0	ENST00000367921.3:c.1603G>T	p.Gly535Cys	p.G535C	ENST00000367921	NM_006182.2	535	Ggc/Tgc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861141	57861141	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1541	122	432	0	ENST00000228682.2:c.938C>G	p.Ser313Ter	p.S313*	ENST00000228682	NM_005269.2	313	tCa/tGa																																																																															
POLE	5426	MSKCC	GRCh37	12	133220070	133220070	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	33	720	0	ENST00000320574.5:c.4367C>G	p.Ser1456Ter	p.S1456*	ENST00000320574	NM_006231.2	1456	tCa/tGa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28896939	28896939	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	46	470	0	ENST00000282397.4:c.2941G>T	p.Glu981Ter	p.E981*	ENST00000282397	NM_002019.4	981	Gag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832614	72832614	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	22	217	0	ENST00000268489.5:c.3968-1G>C		p.X1323_splice	ENST00000268489	NM_006885.3	1323																																																																																
TP53	7157	MSKCC	GRCh37	17	7579485	7579486	+	stop_gained	Nonsense_Mutation	DNP	CT	CT	AA			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	60	801	1	ENST00000269305.4:c.201_202delinsTT	p.Glu68Ter	p.E68*	ENST00000269305	NM_001126112.2	67	ccAGag/ccTTag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448395	56448396	+	splice_acceptor_variant	Splice_Site	DNP	CT	CT	AG			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	55	704	1	ENST00000407977.2:c.253-2_253-1inv		p.X85_splice	ENST00000407977		85																																																																																
DOT1L	84444	MSKCC	GRCh37	19	2223304	2223304	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	124	779	1	ENST00000398665.3:c.3415G>T	p.Glu1139Ter	p.E1139*	ENST00000398665	NM_032482.2	1139	Gag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098469	11098469	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1187772743		P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	63	346	0	ENST00000344626.4:c.987G>T	p.Gln329His	p.Q329H	ENST00000344626	NM_003072.3	329	caG/caT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218513	36218513	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	42	645	0	ENST00000222270.7:c.4292T>C	p.Leu1431Pro	p.L1431P	ENST00000222270	NM_014727.1	1431	cTc/cCc																																																																															
BBC3	27113	MSKCC	GRCh37	19	47729885	47729886	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	60	376	0	ENST00000449228.1:c.503dup	p.Asp171ArgfsTer79	p.D171Rfs*79	ENST00000449228	NM_001127240.2	168	ggc/ggGc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498376	89498376	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	60	260	0	ENST00000336596.2:c.2348G>T	p.Gly783Val	p.G783V	ENST00000336596	NM_005233.5	783	gGa/gTa																																																																															
ATR	545	MSKCC	GRCh37	3	142212078	142212078	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	122	653	2	ENST00000350721.4:c.5974G>T	p.Glu1992Ter	p.E1992*	ENST00000350721	NM_001184.3	1992	Gag/Tag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55131139	55131140	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	94	575	0	ENST00000257290.5:c.682_683delinsCT	p.Gly228Leu	p.G228L	ENST00000257290	NM_006206.4	228	GGg/CTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576754	67576754	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	38	388	0	ENST00000274335.5:c.837-1G>C		p.X279_splice	ENST00000274335		279																																																																																
SMO	6608	MSKCC	GRCh37	7	128845240	128845240	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	29	467	0	ENST00000249373.3:c.734C>A	p.Thr245Lys	p.T245K	ENST00000249373	NM_005631.4	245	aCg/aAg																																																																															
SMO	6608	MSKCC	GRCh37	7	128852054	128852054	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369342481		P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	48	755	0	ENST00000249373.3:c.2126G>A	p.Arg709Gln	p.R709Q	ENST00000249373	NM_005631.4	709	cGg/cAg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117868465	117868465	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	102	612	0	ENST00000297338.2:c.877C>G	p.Gln293Glu	p.Q293E	ENST00000297338	NM_006265.2	293	Caa/Gaa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8525014	8525014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	30	417	0	ENST00000356435.5:c.590G>A	p.Ser197Asn	p.S197N	ENST00000356435		197	aGt/aAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0037729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	44	597	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0037729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	129	698	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																															
NF1	4763	MSKCC	GRCh37	17	29667521	29667521	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0037729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	36	429	0	ENST00000358273.4:c.6922-2A>C		p.X2308_splice	ENST00000358273	NM_001042492.2	2308																																																																																
EZH1	2145	MSKCC	GRCh37	17	40865263	40865263	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	65	552	0	ENST00000428826.2:c.1168A>T	p.Arg390Trp	p.R390W	ENST00000428826		390	Agg/Tgg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57466795	57466795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	20	140	0	ENST00000371085.3:c.14G>A	p.Gly5Glu	p.G5E	ENST00000371085	NM_000516.4	5	gGg/gAg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205175	128205175	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	64	668	0	ENST00000341105.2:c.266T>A	p.Leu89Ter	p.L89*	ENST00000341105	NM_032638.4	89	tTg/tAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542166	187542166	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	81	383	0	ENST00000441802.2:c.5574del	p.Phe1858LeufsTer8	p.F1858Lfs*8	ENST00000441802	NM_005245.3	1858	ttT/tt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149439405	149439405	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	164	566	0	ENST00000286301.3:c.1990G>C	p.Glu664Gln	p.E664Q	ENST00000286301	NM_005211.3	664	Gag/Cag																																																																															
SMO	6608	MSKCC	GRCh37	7	128852183	128852183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	255	845	0	ENST00000249373.3:c.2255C>A	p.Ala752Glu	p.A752E	ENST00000249373	NM_005631.4	752	gCa/gAa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227777	53227777	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	135	703	0	ENST00000375401.3:c.2411G>C	p.Arg804Pro	p.R804P	ENST00000375401	NM_004187.3	804	cGg/cCg																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025621	1025621	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763842232		P-0037834-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			467	121	655	0	ENST00000358495.3:c.754G>A	p.Glu252Lys	p.E252K	ENST00000358495	NM_134424.2	252	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577148	7577148	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1060501194		P-0037834-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			359	201	648	0	ENST00000269305.4:c.790del	p.Leu264TyrfsTer81	p.L264Yfs*81	ENST00000269305	NM_001126112.2	264	Cta/ta																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346246	89346246	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1394383095		P-0037834-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			217	179	432	0	ENST00000301030.4:c.6704C>T	p.Pro2235Leu	p.P2235L	ENST00000301030	NM_001256183.1	2235	cCg/cTg																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799518	72799518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037834-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			510	157	689	0	ENST00000325599.8:c.1651C>A	p.Gln551Lys	p.Q551K	ENST00000325599	NM_018130.2	551	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0037865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	398	793	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0037865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	409	821	1	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748309	41748309	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs894529129		P-0037865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	214	844	0	ENST00000226382.2:c.460C>T	p.Arg154Cys	p.R154C	ENST00000226382	NM_003924.3	154	Cgc/Tgc																																																																															
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	132	513	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468275	50468275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	285	638	0	ENST00000331340.3:c.1510G>A	p.Glu504Lys	p.E504K	ENST00000331340	NM_006060.4	504	Gag/Aag																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522551	176522551	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774571806		P-0037865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	374	821	0	ENST00000292408.4:c.1648G>A	p.Val550Met	p.V550M	ENST00000292408	NM_213647.1	550	Gtg/Atg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112888166	112888166	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121918461		P-0037865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	215	623	0	ENST00000351677.2:c.182A>T	p.Asp61Val	p.D61V	ENST00000351677	NM_002834.3	61	gAt/gTt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523142	176523142	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778323767		P-0037865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	339	787	0	ENST00000292408.4:c.1906G>A	p.Gly636Ser	p.G636S	ENST00000292408	NM_213647.1	636	Ggc/Agc																																																																															
POLE	5426	MSKCC	GRCh37	12	133252745	133252745	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116162724		P-0037865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	83	516	0	ENST00000320574.5:c.955G>A	p.Asp319Asn	p.D319N	ENST00000320574	NM_006231.2	319	Gat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	149	396	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0037919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	22	242	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578194	7578195	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAC			P-0037919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	58	780	0	ENST00000269305.4:c.652_654dup	p.Val218dup	p.V218dup	ENST00000269305	NM_001126112.2	218	-/GTG																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267351	41267351	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0037919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	19	193	0	ENST00000349496.5:c.935A>T	p.Lys312Met	p.K312M	ENST00000349496	NM_001904.3	312	aAg/aTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111499	8111500	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	364	427	0	ENST00000346208.3:c.987dup	p.Arg330GlufsTer22	p.R330Efs*22	ENST00000346208		329	agg/aGgg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068863	30068866	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TGAG	TGAG	-			P-0029353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	109	358	0	ENST00000331968.5:c.2063_2066del	p.Thr688ArgfsTer26	p.T688Rfs*26	ENST00000331968	NM_002742.2	688	aCTCAg/ag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47684692	47684692	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	261	366	0	ENST00000347630.2:c.757G>T	p.Glu253Ter	p.E253*	ENST00000347630	NM_001007230.1	253	Gaa/Taa																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62311237	62311237	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs760939207		P-0029353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1176	118	276	1	ENST00000482936.1:c.1073C>T	p.Thr358Met	p.T358M	ENST00000482936		358	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029357-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			413	180	439	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411411	63411411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029357-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			165	259	326	10	ENST00000330258.3:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000330258	NM_152424.3	586	Cga/Tga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163461	47163461	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029357-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	88	312	0	ENST00000409792.3:c.2665G>T	p.Gly889Ter	p.G889*	ENST00000409792	NM_014159.6	889	Gga/Tga																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876533	35876533	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1329173277		P-0029357-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			531	384	547	0	ENST00000303115.3:c.1325G>A	p.Gly442Glu	p.G442E	ENST00000303115	NM_002185.3	442	gGa/gAa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678335	88678335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029357-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			582	109	572	0	ENST00000360948.2:c.1201C>A	p.Pro401Thr	p.P401T	ENST00000360948	NM_001012338.2	401	Cca/Aca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993348	72993348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029357-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			750	288	758	0	ENST00000268489.5:c.697G>T	p.Val233Leu	p.V233L	ENST00000268489	NM_006885.3	233	Gtg/Ttg																																																																															
KDR	3791	MSKCC	GRCh37	4	55984968	55984968	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0029357-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	154	340	0	ENST00000263923.4:c.162-1G>T		p.X54_splice	ENST00000263923	NM_002253.2	54																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66242767	66242767	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029357-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			395	132	364	0	ENST00000273854.3:c.1805G>C	p.Gly602Ala	p.G602A	ENST00000273854	NM_004439.5	602	gGc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0029391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	241	551	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056314	26056314	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1355795147		P-0029391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	143	327	0	ENST00000343677.2:c.343G>A	p.Glu115Lys	p.E115K	ENST00000343677	NM_005319.3	115	Gaa/Aaa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852737	63852737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	171	418	0	ENST00000279873.7:c.3515C>T	p.Ala1172Val	p.A1172V	ENST00000279873	NM_032199.2	1172	gCt/gTt																																																																															
MSI2	124540	MSKCC	GRCh37	17	55752376	55752376	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	304	777	0	ENST00000284073.2:c.834C>G	p.Ser278Arg	p.S278R	ENST00000284073	NM_138962.2	278	agC/agG																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15280910	15280910	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761061422		P-0029391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2821	325	720	0	ENST00000263388.2:c.5186C>T	p.Ala1729Val	p.A1729V	ENST00000263388	NM_000435.2	1729	gCc/gTc																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504977	186504977	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	165	353	0	ENST00000323963.5:c.837del	p.Leu280SerfsTer10	p.L280Sfs*10	ENST00000323963		278	aTt/at																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742490	145742490	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776385170		P-0029391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1602	296	604	1	ENST00000428558.2:c.298G>A	p.Gly100Ser	p.G100S	ENST00000428558	NM_004260.3	100	Ggc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0029402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	125	532	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36941195	36941196	+	missense_variant	Missense_Mutation	DNP	GA	GA	CC			P-0029402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	62	545	1	ENST00000361632.4:c.143_144delinsGG	p.Ile48Arg	p.I48R	ENST00000361632		48	aTC/aGG																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36941205	36941205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	64	573	0	ENST00000361632.4:c.134C>T	p.Ser45Phe	p.S45F	ENST00000361632		45	tCc/tTc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36941230	36941230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	62	579	0	ENST00000361632.4:c.109C>T	p.His37Tyr	p.H37Y	ENST00000361632		37	Cac/Tac																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99486176	99486176	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs769891354		P-0029402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	44	413	1	ENST00000268035.6:c.3482A>G	p.Tyr1161Cys	p.Y1161C	ENST00000268035	NM_000875.3	1161	tAt/tGt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137325974	137325974	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	96	662	2	ENST00000481739.1:c.1162G>T	p.Glu388Ter	p.E388*	ENST00000481739	NM_002957.4	388	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0029460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	102	630	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0029460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	253	805	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0029460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	105	353	2	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	143	739	0	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557569	21557569	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750816560		P-0029460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	123	745	3	ENST00000382592.4:c.2276G>A	p.Arg759Gln	p.R759Q	ENST00000382592	NM_014572.2	759	cGg/cAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028790	47028790	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	328	461	2	ENST00000329236.7:c.94C>T	p.Arg32Ter	p.R32*	ENST00000329236	NM_001204466.1	32	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249007	55249007	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147149347		P-0029460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	278	610	0	ENST00000275493.2:c.2305G>A	p.Val769Met	p.V769M	ENST00000275493	NM_005228.3	769	Gtg/Atg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71945409	71945411	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0029460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	146	845	0	ENST00000298229.2:c.2299_2301del	p.Ile767del	p.I767del	ENST00000298229	NM_001567.3	766	tTCAtc/ttc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500519	99500519	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138696883		P-0029460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	198	724	4	ENST00000268035.6:c.3952G>A	p.Asp1318Asn	p.D1318N	ENST00000268035	NM_000875.3	1318	Gac/Aac																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967244	134967244	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs151302345		P-0029460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	106	648	0	ENST00000398015.3:c.2583G>A	p.Trp861Ter	p.W861*	ENST00000398015	NM_004441.4	861	tgG/tgA																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638411	176638411	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	41	721	1	ENST00000439151.2:c.3011A>G	p.Asp1004Gly	p.D1004G	ENST00000439151	NM_022455.4	1004	gAc/gGc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468215	50468215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	360	754	1	ENST00000331340.3:c.1450C>A	p.His484Asn	p.H484N	ENST00000331340	NM_006060.4	484	Cac/Aac																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0029465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	74	351	3	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs149680468		P-0029465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	388	497	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																															
TET2	54790	MSKCC	GRCh37	4	106182928	106182928	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	161	495	0	ENST00000380013.4:c.3967G>T	p.Glu1323Ter	p.E1323*	ENST00000380013	NM_001127208.2	1323	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs397516439		P-0029465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	458	615	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27097782	27097782	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	400	560	1	ENST00000324856.7:c.3371A>T	p.Lys1124Met	p.K1124M	ENST00000324856	NM_006015.4	1124	aAg/aTg																																																																															
TP63	8626	MSKCC	GRCh37	3	189604233	189604233	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1694	284	798	0	ENST00000264731.3:c.1400A>C	p.Asn467Thr	p.N467T	ENST00000264731	NM_003722.4	467	aAc/aCc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1906005	1906005	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	208	870	0	ENST00000382895.3:c.660C>A	p.Tyr220Ter	p.Y220*	ENST00000382895	NM_133330.2	220	taC/taA																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84384055	84384645	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTAAACAAAATAGAATAACAGTTCAACATATAACATTTCTTCTACAAAGCTTTTATAATTAACTATTTGTAAGTAAAATTAAGTCAAAAAGATTTTAACAGTTGTATTATCTAAAGTGAGGATAACATACATAATTCTGAATTCTAATTTATATGCCACAGTATTCTAAGACAAAATTAAAGTTGTGTTCTTTCATGTCAGCAATATAGCTACCATAGTATTATGTTCTTTAAAAGCACAGAAAGGGCCGAGCGCAGTGGCTCACACCTATAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACTTGAGGTCAGAAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTATTAAAAATACAAAAAAAATTAGCCAGGCATGGTGGCAGGCACCTGGAATCCCAGCGTTTCAGGAGGCTGAGGCAGGAGAATCGCTTGACCCCAGGAGGCAGAGGTTGCAGTAAGCTGAGATCACACCTTTGCACTCCAACCTAGGCGACAGAGCGAGACTCCGTCTCAAAAATAAATAAATAAATAAAAATTTTTAGCACAGAAAGTAGAGATGTGTTGTTTACTTA	CCTAAACAAAATAGAATAACAGTTCAACATATAACATTTCTTCTACAAAGCTTTTATAATTAACTATTTGTAAGTAAAATTAAGTCAAAAAGATTTTAACAGTTGTATTATCTAAAGTGAGGATAACATACATAATTCTGAATTCTAATTTATATGCCACAGTATTCTAAGACAAAATTAAAGTTGTGTTCTTTCATGTCAGCAATATAGCTACCATAGTATTATGTTCTTTAAAAGCACAGAAAGGGCCGAGCGCAGTGGCTCACACCTATAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACTTGAGGTCAGAAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTATTAAAAATACAAAAAAAATTAGCCAGGCATGGTGGCAGGCACCTGGAATCCCAGCGTTTCAGGAGGCTGAGGCAGGAGAATCGCTTGACCCCAGGAGGCAGAGGTTGCAGTAAGCTGAGATCACACCTTTGCACTCCAACCTAGGCGACAGAGCGAGACTCCGTCTCAAAAATAAATAAATAAATAAAAATTTTTAGCACAGAAAGTAGAGATGTGTTGTTTACTTA	-			P-0029465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	28	569	0	ENST00000321945.7:c.796+2_797del		p.X266_splice	ENST00000321945	NM_139076.2	266																																																																																
IL7R	3575	MSKCC	GRCh37	5	35876167	35876167	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	608	596	1	ENST00000303115.3:c.959T>A	p.Val320Glu	p.V320E	ENST00000303115	NM_002185.3	320	gTg/gAg																																																																															
BRAF	673	MSKCC	GRCh37	7	140494266	140494266	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	68	863	1	ENST00000288602.6:c.982C>T	p.Pro328Ser	p.P328S	ENST00000288602	NM_004333.4	328	Ccc/Tcc																																																																															
ARAF	369	MSKCC	GRCh37	X	47424299	47424383	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	GTGAGTGCAGGGTGGACGGTGGGGGTGGACCATGGTTGGGGGTGTCCTTGACCAGGTCTCAAACTTCCCTGCTCTGTGGCATCAG	GTGAGTGCAGGGTGGACGGTGGGGGTGGACCATGGTTGGGGGTGTCCTTGACCAGGTCTCAAACTTCCCTGCTCTGTGGCATCAG	-			P-0029465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	57	611	0	ENST00000377045.4:c.303+3_305del		p.X101_splice	ENST00000377045	NM_001654.4	101																																																																																
ARAF	369	MSKCC	GRCh37	X	47424539	47424650	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	GTGAGCCCAGCCTGGGGTGGGTGGGGGGATGGGGAGCACAGAGGCCCAGCCACGAGGCCCTTACAGACAGCTGACCCGTGTCCCCTTGCTTTATACCCTTCATGCCCTCAAG	GTGAGCCCAGCCTGGGGTGGGTGGGGGGATGGGGAGCACAGAGGCCCAGCCACGAGGCCCTTACAGACAGCTGACCCGTGTCCCCTTGCTTTATACCCTTCATGCCCTCAAG	-			P-0029465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	103	467	0	ENST00000377045.4:c.458+3_460del		p.X153_splice	ENST00000377045	NM_001654.4	153																																																																																
TP53	7157	MSKCC	GRCh37	17	7576889	7576890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	106	596	0	ENST00000269305.4:c.956dup	p.Lys320GlufsTer17	p.K320Efs*17	ENST00000269305	NM_001126112.2	319	aag/aaAg																																																																															
CD79B	974	MSKCC	GRCh37	17	62006799	62006799	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	79	549	0	ENST00000392795.3:c.589T>G	p.Tyr197Asp	p.Y197D	ENST00000392795	NM_001039933.1	197	Tac/Gac																																																																															
LMO1	4004	MSKCC	GRCh37	11	8252006	8252006	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	54	647	1	ENST00000335790.3:c.71G>T	p.Cys24Phe	p.C24F	ENST00000335790	NM_002315.2	24	tGt/tTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48951123	48951123	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	23	357	0	ENST00000267163.4:c.1285A>T	p.Lys429Ter	p.K429*	ENST00000267163	NM_000321.2	429	Aaa/Taa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514688	103514688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	77	357	0	ENST00000355739.4:c.1189G>T	p.Asp397Tyr	p.D397Y	ENST00000355739	NM_000123.3	397	Gat/Tat																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138407752	138407752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	37	444	0	ENST00000289153.2:c.2101G>A	p.Gly701Arg	p.G701R	ENST00000289153	NM_006219.2	701	Gga/Aga																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876400	35876400	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	88	553	0	ENST00000303115.3:c.1192C>A	p.Pro398Thr	p.P398T	ENST00000303115	NM_002185.3	398	Cct/Act																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046041	180046041	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	38	196	0	ENST00000261937.6:c.2830del	p.Asp944ThrfsTer63	p.D944Tfs*63	ENST00000261937	NM_182925.4	944	Gac/ac																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047945	180047946	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AT			P-0029585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	152	664	1	ENST00000261937.6:c.2229_2230delinsAT	p.Gly744Ter	p.G744*	ENST00000261937	NM_182925.4	743	gcGGga/gcATga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163886	152163886	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	38	447	0	ENST00000206249.3:c.607G>T	p.Glu203Ter	p.E203*	ENST00000206249	NM_000125.3	203	Gag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81374333	81374333	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	46	334	1	ENST00000222390.5:c.729C>A	p.His243Gln	p.H243Q	ENST00000222390	NM_000601.4	243	caC/caA																																																																															
BRAF	673	MSKCC	GRCh37	7	140508791	140508791	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1409723450		P-0029585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	41	373	0	ENST00000288602.6:c.509C>T	p.Pro170Leu	p.P170L	ENST00000288602	NM_004333.4	170	cCt/cTt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0029594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	212	564	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0029594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	325	649	1	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638795	176638795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1195	262	645	0	ENST00000439151.2:c.3395G>A	p.Gly1132Glu	p.G1132E	ENST00000439151	NM_022455.4	1132	gGa/gAa																																																																															
MED12	9968	MSKCC	GRCh37	X	70356266	70356301	+	inframe_deletion	In_Frame_Del	DEL	CAGCGGTTGCTGCTCTACCACACACACCTGAGGCCC	CAGCGGTTGCTGCTCTACCACACACACCTGAGGCCC	-			P-0029594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	239	629	0	ENST00000374080.3:c.5162_5197del	p.Gln1721_Pro1732del	p.Q1721_P1732del	ENST00000374080		1721	CAGCGGTTGCTGCTCTACCACACACACCTGAGGCCC/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	132	435	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0029597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	247	683	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67650717	67650717	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	108	552	1	ENST00000264010.4:c.1022G>T	p.Arg341Leu	p.R341L	ENST00000264010	NM_006565.3	341	cGt/cTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581256	48581265	+	frameshift_variant	Frame_Shift_Del	DEL	GTAATCGTGC	GTAATCGTGC	-			P-0029597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	63	518	0	ENST00000342988.3:c.560_569del	p.Ser187AsnfsTer12	p.S187Nfs*12	ENST00000342988	NM_005359.5	187	aGTAATCGTGCa/aa																																																																															
STK11	6794	MSKCC	GRCh37	19	1218417	1218418	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	A			P-0029597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	164	586	0	ENST00000326873.7:c.295dup	p.Ile99AsnfsTer64	p.I99Nfs*64	ENST00000326873	NM_000455.4	98	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	59	370	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	200	906	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	20	393	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	37	674	1	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
ERG	2078	MSKCC	GRCh37	21	39775467	39775467	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1048054600		P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	191	656	3	ENST00000288319.7:c.553G>A	p.Ala185Thr	p.A185T	ENST00000288319	NM_182918.3	185	Gcc/Acc																																																																															
TERT	7015	MSKCC	GRCh37	5	1279516	1279516	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773813809		P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	220	1013	3	ENST00000310581.5:c.2020G>A	p.Gly674Ser	p.G674S	ENST00000310581	NM_198253.2	674	Ggc/Agc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	243	610	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779253	3779253	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867074201		P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	47	496	0	ENST00000262367.5:c.5795C>T	p.Thr1932Met	p.T1932M	ENST00000262367	NM_004380.2	1932	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828024	72828024	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200701402		P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	64	930	2	ENST00000268489.5:c.8557G>A	p.Ala2853Thr	p.A2853T	ENST00000268489	NM_006885.3	2853	Gca/Aca																																																																															
ERF	2077	MSKCC	GRCh37	19	42754484	42754484	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	68	721	3	ENST00000222329.4:c.256C>T	p.Arg86Cys	p.R86C	ENST00000222329	NM_006494.2	86	Cgc/Tgc																																																																															
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	146	764	2	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827474	72827474	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749152788		P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	94	682	0	ENST00000268489.5:c.9107G>A	p.Arg3036Gln	p.R3036Q	ENST00000268489	NM_006885.3	3036	cGg/cAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16097786	16097786	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201037902		P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	32	708	2	ENST00000268712.3:c.98G>A	p.Arg33His	p.R33H	ENST00000268712	NM_006311.3	33	cGc/cAc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798968	45798968	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781444		P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	80	828	1	ENST00000372115.3:c.335G>A	p.Arg112Gln	p.R112Q	ENST00000372115	NM_001048171.1	112	cGg/cAg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933540	36933540	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3917997		P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	243	972	0	ENST00000361632.4:c.1747C>T	p.Arg583Cys	p.R583C	ENST00000361632		583	Cgt/Tgt																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699223	117699224	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	158	490	0	ENST00000369458.3:c.417dup	p.Asn140GlufsTer3	p.N140Efs*3	ENST00000369458	NM_024626.3	139	-/G																																																																															
PARP1	142	MSKCC	GRCh37	1	226576422	226576430	+	inframe_deletion	In_Frame_Del	DEL	CATCCACTC	CATCCACTC	-			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	44	625	0	ENST00000366794.5:c.644_652del	p.Gly215_Asp217del	p.G215_D217del	ENST00000366794	NM_001618.3	215	gGAGTGGATGaa/gaa																																																																															
CBL	867	MSKCC	GRCh37	11	119155685	119155685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	44	464	2	ENST00000264033.4:c.1438C>T	p.Arg480Trp	p.R480W	ENST00000264033	NM_005188.3	480	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427612	49427612	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	135	550	0	ENST00000301067.7:c.10876del	p.Arg3626GlyfsTer32	p.R3626Gfs*32	ENST00000301067	NM_003482.3	3626	Cgg/gg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041756	29041756	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	126	343	0	ENST00000282397.4:c.65-2A>G		p.X22_splice	ENST00000282397	NM_002019.4	22																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38060611	38060611	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	251	1168	0	ENST00000250448.2:c.1378T>C	p.Tyr460His	p.Y460H	ENST00000250448	NM_004496.3	460	Tac/Cac																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647433	23647433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	202	572	1	ENST00000261584.4:c.434G>A	p.Ser145Asn	p.S145N	ENST00000261584	NM_024675.3	145	aGc/aAc																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627769	14627769	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs756719881		P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	41	698	0	ENST00000254322.2:c.301A>G	p.Met101Val	p.M101V	ENST00000254322	NM_006145.1	101	Atg/Gtg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024605	31024605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	60	567	0	ENST00000375687.4:c.4090G>A	p.Val1364Ile	p.V1364I	ENST00000375687	NM_015338.5	1364	Gtt/Att																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026859	71026859	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	120	326	0	ENST00000318789.4:c.1363A>G	p.Asn455Asp	p.N455D	ENST00000318789	NM_032682.5	455	Aac/Gac																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526816	31526816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	74	875	1	ENST00000344624.3:c.224G>A	p.Arg75Gln	p.R75Q	ENST00000344624		75	cGa/cAa																																																																															
RXRA	6256	MSKCC	GRCh37	9	137293517	137293517	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747209166		P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	125	1184	0	ENST00000481739.1:c.68C>T	p.Thr23Met	p.T23M	ENST00000481739	NM_002957.4	23	aCg/aTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16247449	16247449	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	51	277	0	ENST00000375759.3:c.1720G>C	p.Gly574Arg	p.G574R	ENST00000375759	NM_015001.2	574	Ggg/Cgg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58677780	58677780	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	87	431	0	ENST00000305921.3:c.5C>A	p.Ala2Glu	p.A2E	ENST00000305921	NM_003620.3	2	gCg/gAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221327	1221343	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACCTGCTGAAAGGTGG	GACCTGCTGAAAGGTGG	-			P-0029798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	155	455	0	ENST00000326873.7:c.852_862+6del		p.X284_splice	ENST00000326873	NM_000455.4	284																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66197814	66197814	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	46	296	0	ENST00000273854.3:c.2885T>A	p.Leu962Gln	p.L962Q	ENST00000273854	NM_004439.5	962	cTa/cAa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149499667	149499667	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	54	489	0	ENST00000261799.4:c.2606G>A	p.Trp869Ter	p.W869*	ENST00000261799	NM_002609.3	869	tGg/tAg																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731631	47731631	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	26	148	0	ENST00000449228.1:c.161G>C	p.Arg54Pro	p.R54P	ENST00000449228	NM_001127240.2	54	cGa/cCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0029814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	63	335	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0029814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	199	667	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29663669	29663669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	39	341	1	ENST00000358273.4:c.6164G>T	p.Cys2055Phe	p.C2055F	ENST00000358273	NM_001042492.2	2055	tGc/tTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181757	56181757	+	splice_acceptor_variant	Splice_Site	DEL	A	A	-			P-0029814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	87	248	0	ENST00000399503.3:c.3983-2del		p.X1328_splice	ENST00000399503	NM_005921.1	1328																																																																																
ETV1	2115	MSKCC	GRCh37	7	13975459	13975459	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80157564		P-0029814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	53	283	1	ENST00000405192.2:c.428C>T	p.Thr143Met	p.T143M	ENST00000405192	NM_001163147.1	143	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	104	432	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0029823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	168	582	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928226	178928226	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519872		P-0029823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	42	334	0	ENST00000263967.3:c.1412C>T	p.Pro471Leu	p.P471L	ENST00000263967	NM_006218.2	471	cCa/cTa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180038349	180038349	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373742042		P-0029823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	283	513	1	ENST00000261937.6:c.3668G>A	p.Arg1223His	p.R1223H	ENST00000261937	NM_182925.4	1223	cGc/cAc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220718	1220718	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0029823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	146	563	0	ENST00000326873.7:c.734+2T>A		p.X245_splice	ENST00000326873	NM_000455.4	245																																																																																
MYOD1	4654	MSKCC	GRCh37	11	17741472	17741472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1428517652		P-0029823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	189	658	0	ENST00000250003.3:c.143C>T	p.Pro48Leu	p.P48L	ENST00000250003	NM_002478.4	48	cCg/cTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69129867	69129867	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	56	206	0	ENST00000288368.4:c.4621A>G	p.Thr1541Ala	p.T1541A	ENST00000288368	NM_024870.2	1541	Acg/Gcg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115871	8115872	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0029831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	156	431	0	ENST00000346208.3:c.1219_1220del	p.Ser407AlafsTer99	p.S407Afs*99	ENST00000346208		406	aTC/a																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78435650	78435650	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1218224822		P-0029831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	166	479	0	ENST00000370768.2:c.170A>G	p.Asp57Gly	p.D57G	ENST00000370768	NM_003902.3	57	gAc/gGc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227707	36227707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1454808380		P-0029831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	228	590	0	ENST00000222270.7:c.7276G>A	p.Val2426Ile	p.V2426I	ENST00000222270	NM_014727.1	2426	Gtt/Att																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909677	50909678	+	missense_variant	Missense_Mutation	DNP	AG	AG	TT			P-0029831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	226	663	1	ENST00000440232.2:c.1397_1398delinsTT	p.Glu466Val	p.E466V	ENST00000440232	NM_002691.3	466	gAG/gTT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0029839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	181	507	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0029839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	116	450	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411900	63411900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	92	799	0	ENST00000330258.3:c.1267C>A	p.Leu423Met	p.L423M	ENST00000330258	NM_152424.3	423	Ctg/Atg																																																																															
RARA	5914	MSKCC	GRCh37	17	38508264	38508285	+	frameshift_variant	Frame_Shift_Del	DEL	TGCGCAAAGCGCACCAGGAAAC	TGCGCAAAGCGCACCAGGAAAC	-			P-0029839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	69	488	0	ENST00000254066.5:c.572_593del	p.Val191AlafsTer72	p.V191Afs*72	ENST00000254066	NM_000964.3	191	gTGCGCAAAGCGCACCAGGAAACc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0029928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	472	684	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748309	41748309	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs894529129		P-0029928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	129	631	0	ENST00000226382.2:c.460C>T	p.Arg154Cys	p.R154C	ENST00000226382	NM_003924.3	154	Cgc/Tgc																																																																															
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	113	439	1	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188183	11188183	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1057524049		P-0029928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	116	429	0	ENST00000361445.4:c.5911G>A	p.Ala1971Thr	p.A1971T	ENST00000361445	NM_004958.3	1971	Gcc/Acc																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2090156	2090156	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148474733		P-0029928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	357	847	3	ENST00000219066.1:c.793G>A	p.Ala265Thr	p.A265T	ENST00000219066	NM_002528.5	265	Gcc/Acc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288999	33288999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766610163		P-0029928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	131	516	0	ENST00000374542.5:c.553C>T	p.Arg185Trp	p.R185W	ENST00000374542	NM_001141970.1	185	Cgg/Tgg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436331	110436331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	106	280	0	ENST00000375856.3:c.2070G>T	p.Leu690Phe	p.L690F	ENST00000375856	NM_003749.2	690	ttG/ttT																																																																															
APC	324	MSKCC	GRCh37	5	112173625	112173625	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	117	409	0	ENST00000257430.4:c.2336del	p.Leu779Ter	p.L779*	ENST00000257430	NM_000038.5	778	aaT/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175329	112175534	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCAGGCACAAAGCTGTTGAATTTTCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTATGTTCAGGAGACCCCACTCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAGTCGTTCGATTGCCAGCTCCGTTCAGAGTGAACCATGCAGTGGAATGGTAA	AGCCAGGCACAAAGCTGTTGAATTTTCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTATGTTCAGGAGACCCCACTCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAGTCGTTCGATTGCCAGCTCCGTTCAGAGTGAACCATGCAGTGGAATGGTAA	-			P-0029928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	44	298	0	ENST00000257430.4:c.4038_4243del	p.Ala1347TrpfsTer7	p.A1347Wfs*7	ENST00000257430	NM_000038.5	1346	tcAGCCAGGCACAAAGCTGTTGAATTTTCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTATGTTCAGGAGACCCCACTCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAGTCGTTCGATTGCCAGCTCCGTTCAGAGTGAACCATGCAGTGGAATGGTAAgt/tcgt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155725	56155726	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0029981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	192	293	0	ENST00000399503.3:c.819_820del	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	273	AGa/a																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881002	37881003	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTCCCCA			P-0029981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	1259	497	0	ENST00000269571.5:c.2332_2340dup	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	-/GGCTCCCCA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578273	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0029981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	569	456	0	ENST00000269305.4:c.576_577delinsTT	p.Gln192_His193delinsHisTyr	p.Q192_H193delinsHY	ENST00000269305	NM_001126112.2	192	caGCat/caTTat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435005	49435005	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1281047785		P-0029981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	296	383	0	ENST00000301067.7:c.6548A>G	p.Tyr2183Cys	p.Y2183C	ENST00000301067	NM_003482.3	2183	tAt/tGt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435201	110435201	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	164	318	1	ENST00000375856.3:c.3200G>T	p.Gly1067Val	p.G1067V	ENST00000375856	NM_003749.2	1067	gGg/gTg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246569	41246569	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	314	494	0	ENST00000357654.3:c.979A>T	p.Thr327Ser	p.T327S	ENST00000357654	NM_007294.3	327	Aca/Tca																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161268	56161278	+	frameshift_variant	Frame_Shift_Del	DEL	TTTAAAGAATT	TTTAAAGAATT	-			P-0029981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	159	304	0	ENST00000399503.3:c.1139_1149del	p.Leu380Ter	p.L380*	ENST00000399503	NM_005921.1	379	acTTTAAAGAATTtt/actt																																																																															
SESN1	27244	MSKCC	GRCh37	6	109322462	109322566	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAACAATTTTTCACTGAATGTTTACAAACCATTATTCCAATGTAGTGACGATAATGTAGGGGTAACGGCCCATCCATTTGCAGTAGATAGTGCTGAGTTTTTAAG	AAACAATTTTTCACTGAATGTTTACAAACCATTATTCCAATGTAGTGACGATAATGTAGGGGTAACGGCCCATCCATTTGCAGTAGATAGTGCTGAGTTTTTAAG	-			P-0029981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	158	266	0	ENST00000436639.2:c.471_546+29del		p.X157_splice	ENST00000436639	NM_014454.2	157																																																																																
TNFAIP3	7128	MSKCC	GRCh37	6	138202341	138202341	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	329	435	0	ENST00000237289.4:c.2258C>A	p.Ala753Asp	p.A753D	ENST00000237289	NM_001270507.1	753	gCc/gAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27058033	27058033	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	93	620	0	ENST00000324856.7:c.1741C>T	p.Gln581Ter	p.Q581*	ENST00000324856	NM_006015.4	581	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692794	89692794	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121909238		P-0029997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	91	363	0	ENST00000371953.3:c.278A>G	p.His93Arg	p.H93R	ENST00000371953	NM_000314.4	93	cAt/cGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	172	535	3	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	185	377	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
ERG	2078	MSKCC	GRCh37	21	39755611	39755611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	255	571	0	ENST00000288319.7:c.1154G>A	p.Arg385His	p.R385H	ENST00000288319	NM_182918.3	385	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	105	543	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	232	768	11	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	313	684	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	256	536	2	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	69	277	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	73	358	3	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	167	325	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857974	9857974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61758996		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	241	603	1	ENST00000330684.3:c.3427G>A	p.Glu1143Lys	p.E1143K	ENST00000330684	NM_001134407.1	1143	Gag/Aag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2108765	2108765	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755631210		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	287	670	2	ENST00000219476.3:c.866C>T	p.Ala289Val	p.A289V	ENST00000219476	NM_000548.3	289	gCg/gTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39937164	39937164	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	132	366	0	ENST00000378444.4:c.19del	p.Leu7CysfsTer9	p.L7Cfs*9	ENST00000378444	NM_001123385.1	7	Ctg/tg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	164	518	9	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	396	430	7	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs80357522		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	132	771	4	ENST00000357654.3:c.1961del	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63537616	63537616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	105	592	2	ENST00000307078.5:c.1016G>A	p.Arg339His	p.R339H	ENST00000307078	NM_004655.3	339	cGc/cAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346158	89346158	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	91	235	1	ENST00000301030.4:c.6792del	p.Ala2265ProfsTer72	p.A2265Pfs*72	ENST00000301030	NM_001256183.1	2264	ccC/cc																																																																															
EED	8726	MSKCC	GRCh37	11	85989562	85989562	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs767548896		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	151	371	0	ENST00000263360.6:c.1321C>T	p.Arg441Ter	p.R441*	ENST00000263360	NM_003797.3	441	Cga/Tga																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008200	29008200	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1014160326		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	178	309	0	ENST00000282397.4:c.671G>A	p.Arg224Gln	p.R224Q	ENST00000282397	NM_002019.4	224	cGa/cAa																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111921750	111921750	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185078669		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	184	434	0	ENST00000393256.3:c.539G>A	p.Arg180Gln	p.R180Q	ENST00000393256	NM_006538.4	180	cGa/cAa																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732279	74732279	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	72	305	0	ENST00000359995.5:c.630del	p.Lys211SerfsTer21	p.K211Sfs*21	ENST00000359995	NM_001195427.1	210	ccC/cc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885970	111885970	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371681526		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	215	585	0	ENST00000341259.2:c.1592C>T	p.Ser531Leu	p.S531L	ENST00000341259	NM_005475.2	531	tCg/tTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272266	15272266	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1363323415		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	265	764	0	ENST00000263388.2:c.6173C>T	p.Ser2058Leu	p.S2058L	ENST00000263388	NM_000435.2	2058	tCg/tTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42005513	42005517	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAA	GAAAA	-			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	298	654	0	ENST00000219905.7:c.3255_3259del	p.Arg1085SerfsTer5	p.R1085Sfs*5	ENST00000219905	NM_001164273.1	1083	ttGAAAAga/ttga																																																																															
RARA	5914	MSKCC	GRCh37	17	38506128	38506128	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	305	627	0	ENST00000254066.5:c.420C>A	p.Cys140Ter	p.C140*	ENST00000254066	NM_000964.3	140	tgC/tgA																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93969087	93969087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1270476760		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	127	269	0	ENST00000369303.4:c.1909C>T	p.Arg637Cys	p.R637C	ENST00000369303	NM_004440.3	637	Cgt/Tgt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681120	117681120	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772514180		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	183	516	0	ENST00000368508.3:c.3500del	p.Leu1167Ter	p.L1167*	ENST00000368508	NM_002944.2	1167	tTa/ta																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	326	729	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2104304	2104304	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764529584		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	235	553	0	ENST00000219476.3:c.344G>A	p.Arg115His	p.R115H	ENST00000219476	NM_000548.3	115	cGt/cAt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89156926	89156928	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs1257815746		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	384	510	0	ENST00000336596.2:c.30_32del	p.Leu11del	p.L11del	ENST00000336596	NM_005233.5	10	CTT/-																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444933	49444933	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746841307		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	277	618	0	ENST00000301067.7:c.2533C>T	p.Arg845Trp	p.R845W	ENST00000301067	NM_003482.3	845	Cgg/Tgg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111487	8111487	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	253	655	0	ENST00000346208.3:c.973A>G	p.Thr325Ala	p.T325A	ENST00000346208		325	Acc/Gcc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	292	677	3	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012386	152012386	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	119	333	2	ENST00000262189.6:c.427del	p.Ser143ValfsTer3	p.S143Vfs*3	ENST00000262189	NM_170606.2	143	Agt/gt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	404	508	21	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18968144	18968144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	195	603	1	ENST00000262803.5:c.1984G>A	p.Asp662Asn	p.D662N	ENST00000262803	NM_002911.3	662	Gac/Aac																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721771	176721771	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767815479		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	195	446	2	ENST00000439151.2:c.7402C>T	p.Arg2468Trp	p.R2468W	ENST00000439151	NM_022455.4	2468	Cgg/Tgg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980614	1980614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	174	493	1	ENST00000382895.3:c.4076G>A	p.Arg1359Gln	p.R1359Q	ENST00000382895	NM_133330.2	1359	cGg/cAg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187222	38187222	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1412	118	818	1	ENST00000317025.8:c.1255del	p.Thr419ProfsTer8	p.T419Pfs*8	ENST00000317025	NM_023034.1	419	Acc/cc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264407	46264407	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs529456958		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	197	465	1	ENST00000371998.3:c.1454G>A	p.Arg485His	p.R485H	ENST00000371998		485	cGt/cAt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279920	18279920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	151	727	2	ENST00000222254.8:c.2003G>A	p.Cys668Tyr	p.C668Y	ENST00000222254	NM_005027.3	668	tGc/tAc																																																																															
AURKA	6790	MSKCC	GRCh37	20	54958198	54958198	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756121188		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	220	522	1	ENST00000312783.6:c.409C>T	p.Arg137Cys	p.R137C	ENST00000312783	NM_198436.1	137	Cgc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256528	16256528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	300	659	1	ENST00000375759.3:c.3793C>T	p.Arg1265Ter	p.R1265*	ENST00000375759	NM_015001.2	1265	Cga/Tga																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38272320	38272320	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751038400		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	117	659	0	ENST00000425967.3:c.2047G>A	p.Asp683Asn	p.D683N	ENST00000425967	NM_001174067.1	683	Gac/Aac																																																																															
TET1	80312	MSKCC	GRCh37	10	70333089	70333089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	131	716	0	ENST00000373644.4:c.994G>A	p.Ala332Thr	p.A332T	ENST00000373644	NM_030625.2	332	Gca/Aca																																																																															
TET1	80312	MSKCC	GRCh37	10	70441223	70441223	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	251	558	0	ENST00000373644.4:c.4892C>A	p.Ala1631Asp	p.A1631D	ENST00000373644	NM_030625.2	1631	gCt/gAt																																																																															
PGR	5241	MSKCC	GRCh37	11	100933297	100933297	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	114	582	0	ENST00000325455.5:c.2093T>C	p.Val698Ala	p.V698A	ENST00000325455	NM_001202474.3	698	gTg/gCg																																																																															
ATM	472	MSKCC	GRCh37	11	108153507	108153507	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	210	434	0	ENST00000278616.4:c.3647A>G	p.Tyr1216Cys	p.Y1216C	ENST00000278616	NM_000051.3	1216	tAt/tGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416537	49416537	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761987042		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	250	543	0	ENST00000301067.7:c.16174C>T	p.Arg5392Cys	p.R5392C	ENST00000301067	NM_003482.3	5392	Cgc/Tgc																																																																															
POLE	5426	MSKCC	GRCh37	12	133249308	133249308	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748489355		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	339	783	0	ENST00000320574.5:c.1591G>A	p.Gly531Arg	p.G531R	ENST00000320574	NM_006231.2	531	Gga/Aga																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569817	95569817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	55	369	0	ENST00000343455.3:c.3916G>A	p.Ala1306Thr	p.A1306T	ENST00000343455	NM_177438.2	1306	Gct/Act																																																																															
MGA	23269	MSKCC	GRCh37	15	42005668	42005668	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1042566083		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	23	283	2	ENST00000219905.7:c.3404A>G	p.Lys1135Arg	p.K1135R	ENST00000219905	NM_001164273.1	1135	aAa/aGa																																																																															
CD276	80381	MSKCC	GRCh37	15	73996708	73996708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	22	110	0	ENST00000318443.5:c.1264G>A	p.Val422Met	p.V422M	ENST00000318443	NM_001024736.1	422	Gtg/Atg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89825027	89825027	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773070418		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	284	573	4	ENST00000389301.3:c.2939C>T	p.Ala980Val	p.A980V	ENST00000389301	NM_000135.2	980	gCg/gTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15942868	15942868	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1290753263		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	120	542	0	ENST00000268712.3:c.6834A>T	p.Lys2278Asn	p.K2278N	ENST00000268712	NM_006311.3	2278	aaA/aaT																																																																															
FLCN	201163	MSKCC	GRCh37	17	17129522	17129522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	65	641	1	ENST00000285071.4:c.364C>T	p.Arg122Cys	p.R122C	ENST00000285071	NM_144997.5	122	Cgc/Tgc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687507	37687508	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	140	408	0	ENST00000447079.4:c.4413_4414del	p.Tyr1472SerfsTer40	p.Y1472Sfs*40	ENST00000447079	NM_015083.1	1471	CTc/c																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40371821	40371821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1326533398		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	286	704	0	ENST00000293328.3:c.590G>A	p.Arg197His	p.R197H	ENST00000293328	NM_012448.3	197	cGt/cAt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220680	1220680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	317	781	1	ENST00000326873.7:c.698G>A	p.Gly233Asp	p.G233D	ENST00000326873	NM_000455.4	233	gGc/gAc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262170	10262172	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	300	723	0	ENST00000340748.4:c.2119_2121del	p.Asp707del	p.D707del	ENST00000340748		707	GAT/-																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11118628	11118630	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	273	684	3	ENST00000344626.4:c.2056_2058del	p.Glu686del	p.E686del	ENST00000344626	NM_003072.3	684	gtGGAg/gtg																																																																															
CALR	811	MSKCC	GRCh37	19	13054389	13054390	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	107	548	0	ENST00000316448.5:c.1001dup	p.Asn334LysfsTer3	p.N334Kfs*3	ENST00000316448	NM_004343.3	333	-/A																																																																															
AXL	558	MSKCC	GRCh37	19	41727800	41727800	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	287	824	0	ENST00000301178.4:c.425T>C	p.Leu142Pro	p.L142P	ENST00000301178	NM_021913.4	142	cTg/cCg																																																																															
ERF	2077	MSKCC	GRCh37	19	42754520	42754520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	296	810	0	ENST00000222329.4:c.220C>T	p.Pro74Ser	p.P74S	ENST00000222329	NM_006494.2	74	Ccc/Tcc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918709	50918709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501818		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	92	511	3	ENST00000440232.2:c.2579C>T	p.Ala860Val	p.A860V	ENST00000440232	NM_002691.3	860	gCg/gTg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31381401	31381401	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs201681031		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	199	427	0	ENST00000328111.2:c.1126G>A	p.Glu376Lys	p.E376K	ENST00000328111	NM_006892.3	376	Gag/Aag																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46268333	46268333	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747268479		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	157	404	0	ENST00000371998.3:c.2720G>A	p.Arg907Gln	p.R907Q	ENST00000371998		907	cGa/cAa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37055932	37055932	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	281	359	0	ENST00000231790.2:c.687A>G	p.Ile229Met	p.I229M	ENST00000231790	NM_000249.3	229	atA/atG																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119582341	119582342	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	100	349	0	ENST00000316626.5:c.1059dup	p.Asp354Ter	p.D354*	ENST00000316626		353	-/T																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803351	1803351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	269	718	0	ENST00000260795.2:c.620G>A	p.Arg207Gln	p.R207Q	ENST00000260795		207	cGg/cAg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957897	1957897	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs934745655		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	262	533	0	ENST00000382895.3:c.2863G>A	p.Gly955Arg	p.G955R	ENST00000382895	NM_133330.2	955	Gga/Aga																																																																															
IL7R	3575	MSKCC	GRCh37	5	35857110	35857111	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	135	246	0	ENST00000303115.3:c.37dup	p.Ser13PhefsTer25	p.S13Ffs*25	ENST00000303115	NM_002185.3	11	gtt/gTtt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149441113	149441113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200788902		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	328	849	2	ENST00000286301.3:c.1799C>T	p.Thr600Met	p.T600M	ENST00000286301	NM_005211.3	600	aCg/aTg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149503812	149503812	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	206	506	0	ENST00000261799.4:c.2023+1G>A		p.X675_splice	ENST00000261799	NM_002609.3	675																																																																																
NSD1	64324	MSKCC	GRCh37	5	176562195	176562195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	297	685	0	ENST00000439151.2:c.91C>T	p.Pro31Ser	p.P31S	ENST00000439151	NM_022455.4	31	Cct/Tct																																																																															
E2F3	1871	MSKCC	GRCh37	6	20481463	20481463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	154	338	0	ENST00000346618.3:c.532C>T	p.Arg178Trp	p.R178W	ENST00000346618	NM_001949.4	178	Cgg/Tgg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157517316	157517316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	94	425	0	ENST00000346085.5:c.3880C>T	p.Pro1294Ser	p.P1294S	ENST00000346085	NM_020732.3	1294	Ccc/Tcc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513001	106513001	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs770625280		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	28	263	0	ENST00000359195.3:c.2015A>G	p.Tyr672Cys	p.Y672C	ENST00000359195	NM_002649.2	672	tAc/tGc																																																																															
MET	4233	MSKCC	GRCh37	7	116381017	116381017	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	343	641	0	ENST00000397752.3:c.1639C>T	p.Arg547Ter	p.R547*	ENST00000397752	NM_000245.2	547	Cga/Tga																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275747	38275747	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	217	575	0	ENST00000425967.3:c.1522A>G	p.Arg508Gly	p.R508G	ENST00000425967	NM_001174067.1	508	Aga/Gga																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372007	55372007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	418	499	1	ENST00000297316.4:c.697G>A	p.Asp233Asn	p.D233N	ENST00000297316	NM_022454.3	233	Gac/Aac																																																																															
PREX2	80243	MSKCC	GRCh37	8	68950475	68950475	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371711855		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	543	459	0	ENST00000288368.4:c.787C>T	p.Arg263Trp	p.R263W	ENST00000288368	NM_024870.2	263	Cgg/Tgg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741256	145741256	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766026341		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	699	823	4	ENST00000428558.2:c.1150C>T	p.Arg384Trp	p.R384W	ENST00000428558	NM_004260.3	384	Cgg/Tgg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390963	139390963	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1379904495		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	332	894	1	ENST00000277541.6:c.7228C>T	p.Pro2410Ser	p.P2410S	ENST00000277541	NM_017617.3	2410	Ccg/Tcg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410144	139410144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	513	614	0	ENST00000277541.6:c.1694T>C	p.Val565Ala	p.V565A	ENST00000277541	NM_017617.3	565	gTg/gCg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139566450	139566450	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370929489		P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	148	750	1	ENST00000308874.7:c.709G>A	p.Gly237Ser	p.G237S	ENST00000308874		237	Ggc/Agc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922980	44922983	+	frameshift_variant	Frame_Shift_Del	DEL	CACT	CACT	-			P-0030013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	271	327	0	ENST00000377967.4:c.1846_1849del	p.Thr616TyrfsTer8	p.T616Yfs*8	ENST00000377967	NM_021140.2	614	gCACTc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0030086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	573	645	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
ALK	238	MSKCC	GRCh37	2	29450536	29450536	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs372008367		P-0030086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	247	567	0	ENST00000389048.3:c.2818G>A	p.Gly940Ser	p.G940S	ENST00000389048	NM_004304.4	940	Ggc/Agc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0030109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	36	237	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458330	12458330	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	166	558	0	ENST00000287820.6:c.947G>C	p.Arg316Pro	p.R316P	ENST00000287820	NM_015869.4	316	cGc/cCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	188	670	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0030169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	94	585	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952086	178952086	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	16	503	0	ENST00000263967.3:c.3141T>A	p.His1047Gln	p.H1047Q	ENST00000263967	NM_006218.2	1047	caT/caA																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200493	67200493	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	185	729	0	ENST00000312629.5:c.687C>G	p.Phe229Leu	p.F229L	ENST00000312629	NM_003952.2	229	ttC/ttG																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120836	115120865	+	inframe_deletion	In_Frame_Del	DEL	GGCAGCGAGAGCGCCGCCGCGCCGTTGGGA	GGCAGCGAGAGCGCCGCCGCGCCGTTGGGA	-			P-0030169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	43	454	0	ENST00000257566.3:c.141_170del	p.Pro48_Pro57del	p.P48_P57del	ENST00000257566	NM_016569.3	47	ccTCCCAACGGCGCGGCGGCGCTCTCGCTGCCg/ccg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48586274	48586274	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	27	488	0	ENST00000342988.3:c.943T>C	p.Ser315Pro	p.S315P	ENST00000342988	NM_005359.5	315	Tcc/Ccc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739066	40739066	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	174	564	1	ENST00000373198.4:c.3218G>T	p.Gly1073Val	p.G1073V	ENST00000373198	NM_133170.3	1073	gGc/gTc																																																																															
ATR	545	MSKCC	GRCh37	3	142278285	142278285	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0030169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	145	515	0	ENST00000350721.4:c.1542-2A>C		p.X514_splice	ENST00000350721	NM_001184.3	514																																																																																
TP53	7157	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	302	693	0	ENST00000269305.4:c.400T>G	p.Phe134Val	p.F134V	ENST00000269305	NM_001126112.2	134	Ttt/Gtt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610227	81610227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs763679435		P-0030184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	32	379	0	ENST00000298171.2:c.1825C>T	p.Arg609Ter	p.R609*	ENST00000298171	NM_000369.2	609	Cga/Tga																																																																															
ERF	2077	MSKCC	GRCh37	19	42753567	42753567	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	190	700	0	ENST00000222329.4:c.697C>T	p.Arg233Ter	p.R233*	ENST00000222329	NM_006494.2	233	Cga/Tga																																																																															
YAP1	10413	MSKCC	GRCh37	11	102098222	102098222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	40	525	0	ENST00000282441.5:c.1186G>A	p.Glu396Lys	p.E396K	ENST00000282441	NM_001130145.2	396	Gag/Aag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147512	47147512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	63	576	0	ENST00000409792.3:c.4814A>G	p.Tyr1605Cys	p.Y1605C	ENST00000409792	NM_014159.6	1605	tAt/tGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29679274	29679274	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0030303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	135	342	0	ENST00000358273.4:c.7458-1G>T		p.X2486_splice	ENST00000358273	NM_001042492.2	2486																																																																																
NEGR1	257194	MSKCC	GRCh37	1	72241974	72241974	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	64	299	0	ENST00000357731.5:c.416del	p.Pro139LeufsTer10	p.P139Lfs*10	ENST00000357731	NM_173808.2	139	cCt/ct																																																																															
POLE	5426	MSKCC	GRCh37	12	133214715	133214715	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	64	515	0	ENST00000320574.5:c.5563G>A	p.Glu1855Lys	p.E1855K	ENST00000320574	NM_006231.2	1855	Gag/Aag																																																																															
CIC	23152	MSKCC	GRCh37	19	42799024	42799024	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1200	140	823	0	ENST00000575354.2:c.4508C>G	p.Ser1503Cys	p.S1503C	ENST00000575354	NM_015125.3	1503	tCc/tGc																																																																															
NBN	4683	MSKCC	GRCh37	8	90993102	90993102	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	76	397	0	ENST00000265433.3:c.340del	p.Val114LeufsTer7	p.V114Lfs*7	ENST00000265433	NM_002485.4	114	Gtt/tt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518229	8518229	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs368577359		P-0030303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	143	467	0	ENST00000356435.5:c.1162G>T	p.Asp388Tyr	p.D388Y	ENST00000356435		388	Gat/Tat																																																																															
ATM	472	MSKCC	GRCh37	11	108198374	108198374	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0030303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	30	452	0	ENST00000278616.4:c.6978C>A	p.Asn2326Lys	p.N2326K	ENST00000278616	NM_000051.3	2326	aaC/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	213	625	0	ENST00000269305.4:c.470T>G	p.Val157Gly	p.V157G	ENST00000269305	NM_001126112.2	157	gTc/gGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs397517201		P-0030363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	145	554	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587782082		P-0030417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	37	576	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	204	584	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0030439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	269	606	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944315	81944315	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367884906		P-0030439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	113	500	0	ENST00000359376.3:c.1924G>A	p.Glu642Lys	p.E642K	ENST00000359376	NM_002661.3	642	Gag/Aag																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78919473	78919473	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752129121		P-0030439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1210	139	548	1	ENST00000306801.3:c.3032C>T	p.Thr1011Met	p.T1011M	ENST00000306801	NM_020761.2	1011	aCg/aTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106164751	106164751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	83	319	0	ENST00000380013.4:c.3619G>A	p.Glu1207Lys	p.E1207K	ENST00000380013	NM_001127208.2	1207	Gag/Aag																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199655	138199655	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	97	522	0	ENST00000237289.4:c.1073A>C	p.Glu358Ala	p.E358A	ENST00000237289	NM_001270507.1	358	gAa/gCa																																																																															
SMO	6608	MSKCC	GRCh37	7	128829252	128829648	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCACCTCCACACTGCTGGCCGGAGACTCGGACTCCCAGGAGGAAGCGCACGGCAAGCTCGTGCTCTGGTCGGGTAAGTGCGGCGGAGCCGGGTCTGGGGGGCGGGAGGTGCCGCGGTAAGATGGGGGCACCCTTGGAAAGAACAGGCTCAGGCCTGAGTTTTGGAGAGGGCGGGGACAGCACCCGGGAGAGTTGGAGGGACAGATCCCGAAACTTTGGGGGCAGGTTACGTGCAGGATGGGACCCTCGGTCATGGGAAAAGGAGGGCAAGGAAGTTGACGAAGCGGGTCACAAAGGGCCTGAGCTGGTGGGTGAGCAAAGGATGGCGGGGATGAGGGGCCCGTGAGGAGGTGGCTCTAAGCCACGGGAAAAGACATTTTGTAAGAAGAGGAGATGCT	CCACCTCCACACTGCTGGCCGGAGACTCGGACTCCCAGGAGGAAGCGCACGGCAAGCTCGTGCTCTGGTCGGGTAAGTGCGGCGGAGCCGGGTCTGGGGGGCGGGAGGTGCCGCGGTAAGATGGGGGCACCCTTGGAAAGAACAGGCTCAGGCCTGAGTTTTGGAGAGGGCGGGGACAGCACCCGGGAGAGTTGGAGGGACAGATCCCGAAACTTTGGGGGCAGGTTACGTGCAGGATGGGACCCTCGGTCATGGGAAAAGGAGGGCAAGGAAGTTGACGAAGCGGGTCACAAAGGGCCTGAGCTGGTGGGTGAGCAAAGGATGGCGGGGATGAGGGGCCCGTGAGGAGGTGGCTCTAAGCCACGGGAAAAGACATTTTGTAAGAAGAGGAGATGCT	-			P-0030439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	49	497	0	ENST00000249373.3:c.266_331+331del		p.X89_splice	ENST00000249373	NM_005631.4	89																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	24	381	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	41	555	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0030449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	86	622	1	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	42	343	1	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713589	30713589	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	97	380	2	ENST00000359013.4:c.989T>G	p.Leu330Arg	p.L330R	ENST00000359013	NM_001024847.2	330	cTc/cGc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199502	16199502	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	46	402	0	ENST00000375759.3:c.275A>C	p.Asp92Ala	p.D92A	ENST00000375759	NM_015001.2	92	gAt/gCt																																																																															
CDK8	1024	MSKCC	GRCh37	13	26975681	26975681	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	45	436	0	ENST00000381527.3:c.1189C>T	p.Gln397Ter	p.Q397*	ENST00000381527	NM_001260.1	397	Cag/Tag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223228	5223228	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1224185745		P-0030449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	86	623	1	ENST00000357368.4:c.2575G>A	p.Ala859Thr	p.A859T	ENST00000357368	NM_002850.3	859	Gcg/Acg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249504	153249504	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	85	491	2	ENST00000281708.4:c.1274G>A	p.Trp425Ter	p.W425*	ENST00000281708	NM_033632.3	425	tGg/tAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0030471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	84	551	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057520000		P-0030471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	160	690	0	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061099	38061099	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs577631417		P-0030471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	13	60	0	ENST00000250448.2:c.890C>A	p.Pro297His	p.P297H	ENST00000250448	NM_004496.3	297	cCc/cAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0030473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	158	655	0	ENST00000346208.3:c.1003dup	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
FANCC	2176	MSKCC	GRCh37	9	97912229	97912229	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	130	523	0	ENST00000289081.3:c.662A>T	p.Glu221Val	p.E221V	ENST00000289081	NM_000136.2	221	gAg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0030526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	336	619	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0030526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	71	451	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	83	559	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120139	70120140	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0030526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	82	228	0	ENST00000245479.2:c.1143_1144dup	p.Leu382ArgfsTer2	p.L382Rfs*2	ENST00000245479	NM_000346.3	381	acg/aCGcg																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588868	69588868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	132	588	0	ENST00000168712.1:c.368G>A	p.Arg123Gln	p.R123Q	ENST00000168712	NM_002007.2	123	cGg/cAg																																																																															
SRC	6714	MSKCC	GRCh37	20	36031634	36031634	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750108303		P-0030526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	116	689	1	ENST00000358208.4:c.1463C>T	p.Pro488Leu	p.P488L	ENST00000358208		488	cCg/cTg																																																																															
AR	367	MSKCC	GRCh37	X	66863201	66863201	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057521121		P-0030526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	91	503	0	ENST00000374690.3:c.1720G>A	p.Ala574Thr	p.A574T	ENST00000374690	NM_000044.3	574	Gct/Act																																																																															
ATM	472	MSKCC	GRCh37	11	108099946	108099946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	12	266	0	ENST00000278616.4:c.227G>A	p.Arg76Lys	p.R76K	ENST00000278616	NM_000051.3	76	aGa/aAa																																																																															
ATM	472	MSKCC	GRCh37	11	108218071	108218071	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	24	288	0	ENST00000278616.4:c.8650G>C	p.Glu2884Gln	p.E2884Q	ENST00000278616	NM_000051.3	2884	Gaa/Caa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	72	389	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133210771	133210771	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0030592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	82	342	0	ENST00000320574.5:c.6004+1G>T		p.X2002_splice	ENST00000320574	NM_006231.2	2002																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0030592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	113	574	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185161300	185161300	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1363166292		P-0030592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	31	536	0	ENST00000265026.3:c.727G>A	p.Glu243Lys	p.E243K	ENST00000265026	NM_004721.4	243	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541622	187541622	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	22	288	0	ENST00000441802.2:c.6118G>T	p.Asp2040Tyr	p.D2040Y	ENST00000441802	NM_005245.3	2040	Gat/Tat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044901	47044901	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	81	767	1	ENST00000329236.7:c.1993G>T	p.Glu665Ter	p.E665*	ENST00000329236	NM_001204466.1	665	Gag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	205	478	0	ENST00000346208.3:c.1220dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906916	32906919	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-	rs80359277		P-0030617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	158	450	0	ENST00000380152.3:c.1310_1313del	p.Lys437IlefsTer22	p.K437Ifs*22	ENST00000380152		434	aAAAGa/aa																																																																															
IRF4	3662	MSKCC	GRCh37	6	397163	397163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	158	365	0	ENST00000380956.4:c.548C>T	p.Pro183Leu	p.P183L	ENST00000380956	NM_001195286.1	183	cCg/cTg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561076	9561076	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	121	322	0	ENST00000353224.5:c.706C>A	p.Pro236Thr	p.P236T	ENST00000353224	NM_177990.2	236	Cct/Act																																																																															
FLT4	2324	MSKCC	GRCh37	5	180038473	180038473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	186	628	0	ENST00000261937.6:c.3544G>A	p.Glu1182Lys	p.E1182K	ENST00000261937	NM_182925.4	1182	Gag/Aag																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	25	266	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578446	7578446	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	63	594	0	ENST00000269305.4:c.484A>T	p.Ile162Phe	p.I162F	ENST00000269305	NM_001126112.2	162	Atc/Ttc																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	24	379	0	ENST00000244661.2:c.220G>A	p.Glu74Lys	p.E74K	ENST00000244661	NM_003537.3	74	Gaa/Aaa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857250	9857250	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866228360		P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	41	453	0	ENST00000330684.3:c.4151C>T	p.Ser1384Leu	p.S1384L	ENST00000330684	NM_001134407.1	1384	tCg/tTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602859	10602859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	65	778	1	ENST00000171111.5:c.719G>T	p.Arg240Leu	p.R240L	ENST00000171111	NM_203500.1	240	cGc/cTc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376352	15376352	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776261114		P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	90	824	1	ENST00000263377.2:c.662C>T	p.Thr221Met	p.T221M	ENST00000263377	NM_058243.2	221	aCg/aTg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012340	176012340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	46	396	0	ENST00000367669.3:c.1594G>T	p.Gly532Cys	p.G532C	ENST00000367669	NM_022457.5	532	Ggt/Tgt																																																																															
TET1	80312	MSKCC	GRCh37	10	70450603	70450603	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	44	440	0	ENST00000373644.4:c.5443G>T	p.Glu1815Ter	p.E1815*	ENST00000373644	NM_030625.2	1815	Gaa/Taa																																																																															
WT1	7490	MSKCC	GRCh37	11	32449523	32449524	+	missense_variant	Missense_Mutation	DNP	AG	AG	CT			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	52	604	1	ENST00000332351.3:c.850_851inv	p.Leu284Arg	p.L284R	ENST00000332351	NM_024426.4	284	CTg/AGg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949170	71949171	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-	rs1484650919		P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	56	726	0	ENST00000298229.2:c.3638_3639del	p.Tyr1213Ter	p.Y1213*	ENST00000298229	NM_001567.3	1213	TAt/t																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865095	57865095	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	64	753	1	ENST00000228682.2:c.2572C>T	p.Gln858Ter	p.Q858*	ENST00000228682	NM_005269.2	858	Caa/Taa																																																																															
MSI1	4440	MSKCC	GRCh37	12	120785269	120785269	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	44	490	0	ENST00000257552.2:c.839C>G	p.Ala280Gly	p.A280G	ENST00000257552	NM_002442.3	280	gCg/gGg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900402	32900402	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	31	361	0	ENST00000380152.3:c.499A>T	p.Thr167Ser	p.T167S	ENST00000380152		167	Aca/Tca																																																																															
B2M	567	MSKCC	GRCh37	15	45003736	45003752	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	CGGGCCGAGATGTCTCG	CGGGCCGAGATGTCTCG	-			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	32	291	0	ENST00000558401.1:c.-8_9del		p.*3*	ENST00000558401	NM_004048.2																																																																																	
ZFHX3	463	MSKCC	GRCh37	16	72828694	72828694	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	56	464	0	ENST00000268489.5:c.7887C>G	p.Asn2629Lys	p.N2629K	ENST00000268489	NM_006885.3	2629	aaC/aaG																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091794	29091794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	55	508	0	ENST00000328354.6:c.1163C>T	p.Pro388Leu	p.P388L	ENST00000328354	NM_007194.3	388	cCc/cTc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143044568	143044568	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	21	291	0	ENST00000262992.4:c.1894C>A	p.Leu632Ile	p.L632I	ENST00000262992	NM_001101669.1	632	Ctt/Att																																																																															
MSH3	4437	MSKCC	GRCh37	5	79965916	79965916	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	42	390	1	ENST00000265081.6:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000265081	NM_002439.4	194	Gac/Tac																																																																															
RAD50	10111	MSKCC	GRCh37	5	131925496	131925496	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	29	331	0	ENST00000265335.6:c.1419G>C	p.Arg473Ser	p.R473S	ENST00000265335		473	agG/agC																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672375	30672375	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	99	563	0	ENST00000376406.3:c.4585A>G	p.Thr1529Ala	p.T1529A	ENST00000376406	NM_014641.2	1529	Aca/Gca																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188949	32188950	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	93	636	2	ENST00000375023.3:c.604_605delinsAA	p.Pro202Lys	p.P202K	ENST00000375023	NM_004557.3	202	CCa/AAa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468024	50468024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	35	391	0	ENST00000331340.3:c.1259C>A	p.Pro420Gln	p.P420Q	ENST00000331340	NM_006060.4	420	cCg/cAg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015065	37015065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	31	483	0	ENST00000358127.4:c.339G>T	p.Glu113Asp	p.E113D	ENST00000358127	NM_001280556.1	113	gaG/gaT																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0030699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	300	741	0	ENST00000346208.3:c.1003dup	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106412	27106412	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	223	690	0	ENST00000324856.7:c.6023T>G	p.Leu2008Arg	p.L2008R	ENST00000324856	NM_006015.4	2008	cTg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0030773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	103	426	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0030773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	109	534	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575675	48575676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	77	381	0	ENST00000342988.3:c.437dup	p.Leu146PhefsTer6	p.L146Ffs*6	ENST00000342988	NM_005359.5	145	-/T																																																																															
CIC	23152	MSKCC	GRCh37	19	42799021	42799021	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1171990316		P-0030773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	309	768	0	ENST00000575354.2:c.4505C>T	p.Pro1502Leu	p.P1502L	ENST00000575354	NM_015125.3	1502	cCc/cTc																																																																															
CIC	23152	MSKCC	GRCh37	19	42799306	42799306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	115	413	1	ENST00000575354.2:c.4790C>T	p.Pro1597Leu	p.P1597L	ENST00000575354	NM_015125.3	1597	cCa/cTa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971155	21971156	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	A			P-0030773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	107	302	0	ENST00000304494.5:c.202_203delinsT	p.Ala68TrpfsTer78	p.A68Wfs*78	ENST00000304494	NM_000077.4	68	GCg/Tg																																																																															
ATM	472	MSKCC	GRCh37	11	108205807	108205807	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782719		P-0030792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	123	509	0	ENST00000278616.4:c.8122G>A	p.Asp2708Asn	p.D2708N	ENST00000278616	NM_000051.3	2708	Gat/Aat																																																																															
SUFU	51684	MSKCC	GRCh37	10	104377138	104377138	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	78	719	1	ENST00000369902.3:c.1249T>G	p.Phe417Val	p.F417V	ENST00000369902	NM_016169.3	417	Ttt/Gtt																																																																															
MGA	23269	MSKCC	GRCh37	15	42054048	42054048	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0030792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	83	326	0	ENST00000219905.7:c.7510G>C	p.Gly2504Arg	p.G2504R	ENST00000219905	NM_001164273.1	2504	Ggt/Cgt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500435	99500435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	187	777	0	ENST00000268035.6:c.3868C>T	p.Pro1290Ser	p.P1290S	ENST00000268035	NM_000875.3	1290	Ccg/Tcg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178943755	178943755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200671228		P-0030808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	139	450	1	ENST00000263967.3:c.2422C>T	p.Arg808Trp	p.R808W	ENST00000263967	NM_006218.2	808	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443923	49443924	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0030808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	217	922	0	ENST00000301067.7:c.3446_3447dup	p.Gly1150LysfsTer15	p.G1150Kfs*15	ENST00000301067	NM_003482.3	1149	-/AA																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546959	9546959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	100	442	0	ENST00000353224.5:c.1063G>A	p.Ala355Thr	p.A355T	ENST00000353224	NM_177990.2	355	Gcc/Acc																																																																															
TET2	54790	MSKCC	GRCh37	4	106196889	106196889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	94	409	0	ENST00000380013.4:c.5222C>T	p.Pro1741Leu	p.P1741L	ENST00000380013	NM_001127208.2	1741	cCa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514495		P-0030812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	127	686	1	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134606	2134606	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs397514977		P-0030812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	196	855	0	ENST00000219476.3:c.4383C>G	p.Tyr1461Ter	p.Y1461*	ENST00000219476	NM_000548.3	1461	taC/taG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919264	178919264	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	66	287	0	ENST00000263967.3:c.749A>G	p.Tyr250Cys	p.Y250C	ENST00000263967	NM_006218.2	250	tAt/tGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	12	405	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0030872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	72	472	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
MET	4233	MSKCC	GRCh37	7	116340214	116340214	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201274041		P-0030872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	49	307	0	ENST00000397752.3:c.1076G>A	p.Arg359Gln	p.R359Q	ENST00000397752	NM_000245.2	359	cGa/cAa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043925	180043925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	85	560	0	ENST00000261937.6:c.3071G>A	p.Gly1024Glu	p.G1024E	ENST00000261937	NM_182925.4	1024	gGg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579417	7579418	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0030965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	204	493	0	ENST00000269305.4:c.268_269dup	p.Trp91ProfsTer33	p.W91Pfs*33	ENST00000269305	NM_001126112.2	90	tcc/tcTCc																																																																															
CASP8	841	MSKCC	GRCh37	2	202149595	202149595	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs768612301		P-0030965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	134	346	0	ENST00000358485.4:c.1036T>C	p.Cys346Arg	p.C346R	ENST00000358485	NM_001080125.1	346	Tgc/Cgc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288899	212288904	+	inframe_deletion	In_Frame_Del	DEL	AACGTC	AACGTC	-			P-0030965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	42	184	0	ENST00000342788.4:c.2842_2847del	p.Asp948_Val949del	p.D948_V949del	ENST00000342788	NM_005235.2	948	GACGTT/-																																																																															
BARD1	580	MSKCC	GRCh37	2	215645760	215645760	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	110	423	0	ENST00000260947.4:c.838T>G	p.Leu280Val	p.L280V	ENST00000260947	NM_000465.2	280	Tta/Gta																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520476	176520476	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	189	501	0	ENST00000292408.4:c.1321A>G	p.Ser441Gly	p.S441G	ENST00000292408	NM_213647.1	441	Agc/Ggc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs1057517840		P-0030980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	282	479	0	ENST00000269305.4:c.626_627del	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538257	9538257	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs746240534		P-0030980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	34	382	0	ENST00000353224.5:c.1741C>T	p.Arg581Trp	p.R581W	ENST00000353224	NM_177990.2	581	Cgg/Tgg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032602	12032604	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GTG	GTG	-			P-0030980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	72	340	0	ENST00000353533.5:c.1040+1_1040+3del		p.LCdel	ENST00000353533	NM_003010.3	346	ttGTGc/ttc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266039	41266305	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAA	GGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAA	-			P-0030980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	31	180	0	ENST00000349496.5:c.37_241+62del		p.X13_splice	ENST00000349496	NM_001904.3	13																																																																																
WHSC1L1	54904	MSKCC	GRCh37	8	38137179	38137187	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGGCATC	GCCGGCATC	A			P-0030980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	64	389	0	ENST00000317025.8:c.3631_3639delinsT	p.Asp1211SerfsTer14	p.D1211Sfs*14	ENST00000317025	NM_023034.1	1211	GATGCCGGC/T																																																																															
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs1427441061		P-0031005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	196	575	0	ENST00000269305.4:c.560-2A>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242469	55242481	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAGCAA	TTAAGAGAAGCAA	C	rs397509368		P-0031005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	402	589	0	ENST00000275493.2:c.2239_2251delinsC	p.Leu747_Thr751delinsPro	p.L747_T751delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAAca/Cca																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3860717	3860717	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs749031320		P-0031005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	71	498	0	ENST00000262367.5:c.862A>G	p.Met288Val	p.M288V	ENST00000262367	NM_004380.2	288	Atg/Gtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519936		P-0031007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	156	440	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	195	691	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0031038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	271	741	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175271	112175271	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	184	234	1	ENST00000257430.4:c.3980C>A	p.Ser1327Ter	p.S1327*	ENST00000257430	NM_000038.5	1327	tCa/tAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211109	36211109	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756303519		P-0031038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	273	879	1	ENST00000222270.7:c.860G>A	p.Arg287His	p.R287H	ENST00000222270	NM_014727.1	287	cGt/cAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145623	11145623	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs878854219		P-0031038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	235	712	0	ENST00000344626.4:c.3985C>T	p.Arg1329Cys	p.R1329C	ENST00000344626	NM_003072.3	1329	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0031153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	89	546	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0031153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	408	538	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88690572	88690600	+	frameshift_variant	Frame_Shift_Del	DEL	CGAAGACTCAGCGTCTGGAAGAGCTGCCA	CGAAGACTCAGCGTCTGGAAGAGCTGCCA	-			P-0031153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	73	459	0	ENST00000360948.2:c.430_458del	p.Trp144GlyfsTer14	p.W144Gfs*14	ENST00000360948	NM_001012338.2	144	TGGCAGCTCTTCCAGACGCTGAGTCTTCGg/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0031202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	351	655	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0031202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	212	545	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445091	89445091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	198	441	2	ENST00000336596.2:c.1411G>A	p.Glu471Lys	p.E471K	ENST00000336596	NM_005233.5	471	Gag/Aag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127460	55127460	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779332376		P-0031202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	428	593	1	ENST00000257290.5:c.248C>T	p.Thr83Met	p.T83M	ENST00000257290	NM_006206.4	83	aCg/aTg																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46509349	46509349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	351	518	0	ENST00000262741.5:c.1382G>A	p.Arg461Lys	p.R461K	ENST00000262741	NM_003629.3	461	aGa/aAa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266049	41266300	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACT	CCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACT	-			P-0031202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	26	344	0	ENST00000349496.5:c.46_241+56del		p.X16_splice	ENST00000349496	NM_001904.3	16																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	647	525	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131976439	131976439	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660400		P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	271	690	0	ENST00000265335.6:c.3694G>A	p.Glu1232Lys	p.E1232K	ENST00000265335		1232	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68844139	68844139	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	264	690	0	ENST00000261769.5:c.727G>C	p.Glu243Gln	p.E243Q	ENST00000261769	NM_004360.3	243	Gag/Cag																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94209488	94209488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	164	485	0	ENST00000323929.3:c.626C>T	p.Ser209Phe	p.S209F	ENST00000323929	NM_005591.3	209	tCt/tTt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982329	201982329	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1471	310	822	0	ENST00000359651.3:c.708G>C	p.Lys236Asn	p.K236N	ENST00000359651		236	aaG/aaC																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226253394	226253394	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	101	227	0	ENST00000366813.1:c.166C>G	p.Gln56Glu	p.Q56E	ENST00000366813		56	Cag/Gag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906690	32906690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	43	622	0	ENST00000380152.3:c.1075G>A	p.Glu359Lys	p.E359K	ENST00000380152		359	Gaa/Aaa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640164	3640164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	380	977	0	ENST00000294008.3:c.3475G>A	p.Glu1159Lys	p.E1159K	ENST00000294008	NM_032444.2	1159	Gag/Aag																																																																															
CYLD	1540	MSKCC	GRCh37	16	50816324	50816324	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	223	609	0	ENST00000398568.2:c.1764G>C	p.Lys588Asn	p.K588N	ENST00000398568	NM_001042412.1	588	aaG/aaC																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351830	89351830	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	67	918	0	ENST00000301030.4:c.1120G>C	p.Glu374Gln	p.E374Q	ENST00000301030	NM_001256183.1	374	Gaa/Caa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351884	89351884	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	64	944	0	ENST00000301030.4:c.1066G>C	p.Asp356His	p.D356H	ENST00000301030	NM_001256183.1	356	Gac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578456	7578465	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGACGCGG	GCGGACGCGG	-			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	609	782	0	ENST00000269305.4:c.465_474del	p.Arg156ProfsTer11	p.R156Pfs*11	ENST00000269305	NM_001126112.2	155	acCCGCGTCCGC/ac																																																																															
GNA11	2767	MSKCC	GRCh37	19	3113385	3113385	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	63	702	0	ENST00000078429.4:c.379C>G	p.Gln127Glu	p.Q127E	ENST00000078429	NM_002067.2	127	Cag/Gag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47129691	47129691	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	243	537	0	ENST00000409792.3:c.5189C>G	p.Ser1730Cys	p.S1730C	ENST00000409792	NM_014159.6	1730	tCt/tGt																																																																															
ATR	545	MSKCC	GRCh37	3	142269135	142269135	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	177	409	0	ENST00000350721.4:c.2815G>T	p.Glu939Ter	p.E939*	ENST00000350721	NM_001184.3	939	Gaa/Taa																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815305	32815305	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	334	816	0	ENST00000354258.4:c.2068C>A	p.Gln690Lys	p.Q690K	ENST00000354258	NM_000593.5	690	Cag/Aag																																																																															
FYN	2534	MSKCC	GRCh37	6	112035614	112035614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	164	538	0	ENST00000368678.4:c.280G>A	p.Glu94Lys	p.E94K	ENST00000368678		94	Gaa/Aaa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117868444	117868444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	294	663	0	ENST00000297338.2:c.898G>A	p.Glu300Lys	p.E300K	ENST00000297338	NM_006265.2	300	Gag/Aag																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22221645	22221647	+	stop_gained	Nonsense_Mutation	ONP	GAG	GAG	TAA			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	111	296	1	ENST00000215832.6:c.84_86delinsTTA	p.Ser29Ter	p.S29*	ENST00000215832	NM_002745.4	28	ctCTCg/ctTTAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0031243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	204	431	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579386	7579386	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0031243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	178	618	0	ENST00000269305.4:c.301A>T	p.Lys101Ter	p.K101*	ENST00000269305	NM_001126112.2	101	Aaa/Taa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0031243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	122	439	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0031243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	98	433	0	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
ATR	545	MSKCC	GRCh37	3	142266718	142266718	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	91	459	0	ENST00000350721.4:c.3206G>C	p.Arg1069Thr	p.R1069T	ENST00000350721	NM_001184.3	1069	aGa/aCa																																																																															
STK11	6794	MSKCC	GRCh37	19	1221322	1221322	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	170	596	0	ENST00000326873.7:c.845T>G	p.Leu282Arg	p.L282R	ENST00000326873	NM_000455.4	282	cTc/cGc																																																																															
ATM	472	MSKCC	GRCh37	11	108201110	108201110	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	86	391	0	ENST00000278616.4:c.7477G>C	p.Glu2493Gln	p.E2493Q	ENST00000278616	NM_000051.3	2493	Gaa/Caa																																																																															
ATM	472	MSKCC	GRCh37	11	108201120	108201120	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	86	372	0	ENST00000278616.4:c.7487G>C	p.Gly2496Ala	p.G2496A	ENST00000278616	NM_000051.3	2496	gGa/gCa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21643313	21643313	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0031243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	49	459	0	ENST00000421138.2:c.215-1G>T		p.X72_splice	ENST00000421138		72																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3900813	3900813	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756802946		P-0031243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	115	508	1	ENST00000262367.5:c.283G>A	p.Val95Met	p.V95M	ENST00000262367	NM_004380.2	95	Gtg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832035	72832035	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763864463		P-0031243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	115	504	0	ENST00000268489.5:c.4546G>T	p.Asp1516Tyr	p.D1516Y	ENST00000268489	NM_006885.3	1516	Gac/Tac																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53254021	53254021	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	150	574	0	ENST00000375401.3:c.51C>G	p.Phe17Leu	p.F17L	ENST00000375401	NM_004187.3	17	ttC/ttG																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0031270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	52	622	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508860	106508860	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1251220989		P-0031270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	49	649	1	ENST00000359195.3:c.854C>T	p.Thr285Met	p.T285M	ENST00000359195	NM_002649.2	285	aCg/aTg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73349488	73349488	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0031270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	50	550	0	ENST00000377767.4:c.848T>G	p.Leu283Ter	p.L283*	ENST00000377767	NM_014953.3	283	tTa/tGa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060751	38060756	+	inframe_deletion	In_Frame_Del	DEL	TGCTGC	TGCTGC	-			P-0031270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	394	1138	0	ENST00000250448.2:c.1233_1238del	p.Gln411_Gln412del	p.Q411_Q412del	ENST00000250448	NM_004496.3	411	caGCAGCAt/cat																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62324185	62324185	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A			P-0031270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	66	948	1	ENST00000482936.1:c.2680G>A	p.Asp894Asn	p.D894N	ENST00000482936		894	Gac/Aac																																																																															
ERG	2078	MSKCC	GRCh37	21	39817460	39817460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	215	674	0	ENST00000288319.7:c.103G>T	p.Ala35Ser	p.A35S	ENST00000288319	NM_182918.3	35	Gcg/Tcg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435155	56435155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	115	687	0	ENST00000407977.2:c.1982C>T	p.Ser661Phe	p.S661F	ENST00000407977		661	tCc/tTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29508741	29508741	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	283	548	0	ENST00000358273.4:c.668G>A	p.Trp223Ter	p.W223*	ENST00000358273	NM_001042492.2	223	tGg/tAg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858570	57858570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	492	637	0	ENST00000228682.2:c.308C>A	p.Pro103His	p.P103H	ENST00000228682	NM_005269.2	103	cCc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133233736	133233736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	284	391	0	ENST00000320574.5:c.3568G>A	p.Glu1190Lys	p.E1190K	ENST00000320574	NM_006231.2	1190	Gag/Aag																																																																															
POLE	5426	MSKCC	GRCh37	12	133233839	133233839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	346	478	1	ENST00000320574.5:c.3465G>T	p.Lys1155Asn	p.K1155N	ENST00000320574	NM_006231.2	1155	aaG/aaT																																																																															
POLE	5426	MSKCC	GRCh37	12	133234009	133234009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	338	514	0	ENST00000320574.5:c.3385G>A	p.Asp1129Asn	p.D1129N	ENST00000320574	NM_006231.2	1129	Gat/Aat																																																																															
RB1	5925	MSKCC	GRCh37	13	49037880	49037880	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	125	375	0	ENST00000267163.4:c.2120C>G	p.Ser707Cys	p.S707C	ENST00000267163	NM_000321.2	707	tCc/tGc																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732891	74732891	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	60	162	0	ENST00000359995.5:c.352C>G	p.Arg118Gly	p.R118G	ENST00000359995	NM_001195427.1	118	Cgg/Ggg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56411677	56411677	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	288	458	0	ENST00000348428.3:c.1861A>C	p.Lys621Gln	p.K621Q	ENST00000348428	NM_006785.3	621	Aaa/Caa																																																																															
APC	324	MSKCC	GRCh37	5	112173835	112173835	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs764867930		P-0031357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	179	354	1	ENST00000257430.4:c.2544A>T	p.Lys848Asn	p.K848N	ENST00000257430	NM_000038.5	848	aaA/aaT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120834	94120835	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTG			P-0031357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	235	539	0	ENST00000369303.4:c.214_216dup	p.Gln72dup	p.Q72dup	ENST00000369303	NM_004440.3	72	-/CAG																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805684	46805713	+	inframe_deletion	In_Frame_Del	DEL	CGGCAGGAGTAGTACCCGCCTCCAAAGTAA	CGGCAGGAGTAGTACCCGCCTCCAAAGTAA	-			P-0031419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	425	866	0	ENST00000290295.7:c.243_272del	p.Tyr82_Arg91del	p.Y82_R91del	ENST00000290295	NM_006361.5	81	ggTTACTTTGGAGGCGGGTACTACTCCTGCCGa/gga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165153	47165153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	197	358	0	ENST00000409792.3:c.973G>A	p.Glu325Lys	p.E325K	ENST00000409792	NM_014159.6	325	Gaa/Aaa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445082	89445082	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	295	536	0	ENST00000336596.2:c.1402T>A	p.Leu468Met	p.L468M	ENST00000336596	NM_005233.5	468	Ttg/Atg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467759	50467759	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	51	689	0	ENST00000331340.3:c.994C>T	p.Gln332Ter	p.Q332*	ENST00000331340	NM_006060.4	332	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0031431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	69	391	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36938248	36938248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	287	630	1	ENST00000361632.4:c.713G>A	p.Ser238Asn	p.S238N	ENST00000361632		238	aGc/aAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29664463	29664463	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	283	455	0	ENST00000358273.4:c.6505A>T	p.Lys2169Ter	p.K2169*	ENST00000358273	NM_001042492.2	2169	Aaa/Taa																																																																															
CD79B	974	MSKCC	GRCh37	17	62006656	62006656	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	278	546	0	ENST00000392795.3:c.623A>C	p.Tyr208Ser	p.Y208S	ENST00000392795	NM_001039933.1	208	tAt/tCt																																																																															
ERG	2078	MSKCC	GRCh37	21	39817519	39817519	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	74	488	0	ENST00000288319.7:c.44A>G	p.Asp15Gly	p.D15G	ENST00000288319	NM_182918.3	15	gAc/gGc																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271376	26271408	+	inframe_deletion	In_Frame_Del	DEL	GAAGTCCTGAGCGATTTCTCGCACCAGGCGTTG	GAAGTCCTGAGCGATTTCTCGCACCAGGCGTTG	-			P-0031431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	26	441	0	ENST00000305910.3:c.205_237del	p.Gln69_Phe79del	p.Q69_F79del	ENST00000305910	NM_003534.2	69	CAACGCCTGGTGCGAGAAATCGCTCAGGACTTC/-																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974787	21974788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	51	168	0	ENST00000304494.5:c.39dup	p.Asp14Ter	p.D14*	ENST00000304494	NM_000077.4	13	-/T																																																																															
TEK	7010	MSKCC	GRCh37	9	27168596	27168596	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	137	490	0	ENST00000380036.4:c.468C>G	p.Tyr156Ter	p.Y156*	ENST00000380036	NM_000459.3	156	taC/taG																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923199	39923199	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	83	210	0	ENST00000378444.4:c.3509G>T	p.Trp1170Leu	p.W1170L	ENST00000378444	NM_001123385.1	1170	tGg/tTg																																																																															
ARAF	369	MSKCC	GRCh37	X	47422727	47422727	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0031431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	106	269	0	ENST00000377045.4:c.199G>T	p.Gly67Ter	p.G67*	ENST00000377045	NM_001654.4	67	Gga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0031476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	298	341	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	290	583	2	ENST00000269305.4:c.497C>A	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177681	56177682	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAG			P-0031476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	137	356	0	ENST00000399503.3:c.2654_2655insCCAG	p.Leu885PhefsTer20	p.L885Ffs*20	ENST00000399503	NM_005921.1	885	ttg/ttCCAGg																																																																															
BTK	695	MSKCC	GRCh37	X	100611808	100611808	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	197	424	0	ENST00000308731.7:c.1313C>A	p.Ser438Tyr	p.S438Y	ENST00000308731	NM_000061.2	438	tCt/tAt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255220	16255220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1482043812		P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	295	496	0	ENST00000375759.3:c.2485C>T	p.His829Tyr	p.H829Y	ENST00000375759	NM_015001.2	829	Cac/Tac																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255496	16255496	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	324	543	0	ENST00000375759.3:c.2761C>T	p.Gln921Ter	p.Q921*	ENST00000375759	NM_015001.2	921	Cag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255934	16255934	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	282	569	0	ENST00000375759.3:c.3199C>T	p.Gln1067Ter	p.Q1067*	ENST00000375759	NM_015001.2	1067	Cag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256568	16256568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	311	529	0	ENST00000375759.3:c.3833C>A	p.Ser1278Tyr	p.S1278Y	ENST00000375759	NM_015001.2	1278	tCc/tAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256750	16256750	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760134992		P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	323	507	0	ENST00000375759.3:c.4015C>T	p.Arg1339Cys	p.R1339C	ENST00000375759	NM_015001.2	1339	Cgt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257014	16257014	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	309	495	0	ENST00000375759.3:c.4279G>C	p.Glu1427Gln	p.E1427Q	ENST00000375759	NM_015001.2	1427	Gaa/Caa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257102	16257102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	343	500	0	ENST00000375759.3:c.4367C>T	p.Ser1456Leu	p.S1456L	ENST00000375759	NM_015001.2	1456	tCa/tTa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257434	16257434	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	310	485	0	ENST00000375759.3:c.4699G>A	p.Glu1567Lys	p.E1567K	ENST00000375759	NM_015001.2	1567	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257797	16257797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	302	512	0	ENST00000375759.3:c.5062G>A	p.Glu1688Lys	p.E1688K	ENST00000375759	NM_015001.2	1688	Gaa/Aaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257971	16257971	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1444111349		P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	251	540	0	ENST00000375759.3:c.5236G>A	p.Glu1746Lys	p.E1746K	ENST00000375759	NM_015001.2	1746	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257975	16257975	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768562805		P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	251	524	0	ENST00000375759.3:c.5240G>A	p.Ser1747Asn	p.S1747N	ENST00000375759	NM_015001.2	1747	aGc/aAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258091	16258091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	248	491	0	ENST00000375759.3:c.5356G>A	p.Asp1786Asn	p.D1786N	ENST00000375759	NM_015001.2	1786	Gat/Aat																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258820	16258820	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	648	701	1	ENST00000375759.3:c.6085G>T	p.Glu2029Ter	p.E2029*	ENST00000375759	NM_015001.2	2029	Gaa/Taa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258869	16258869	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	705	720	0	ENST00000375759.3:c.6134G>C	p.Arg2045Thr	p.R2045T	ENST00000375759	NM_015001.2	2045	aGa/aCa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259043	16259043	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	542	680	0	ENST00000375759.3:c.6313del	p.Ala2105LeufsTer33	p.A2105Lfs*33	ENST00000375759	NM_015001.2	2103	aGg/ag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259068	16259068	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1172519195		P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	595	677	0	ENST00000375759.3:c.6333G>C	p.Glu2111Asp	p.E2111D	ENST00000375759	NM_015001.2	2111	gaG/gaC																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259573	16259573	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1461527382		P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	578	543	0	ENST00000375759.3:c.6838G>C	p.Glu2280Gln	p.E2280Q	ENST00000375759	NM_015001.2	2280	Gaa/Caa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259654	16259654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	706	615	0	ENST00000375759.3:c.6919G>A	p.Glu2307Lys	p.E2307K	ENST00000375759	NM_015001.2	2307	Gaa/Aaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259893	16259893	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	638	627	0	ENST00000375759.3:c.7158G>C	p.Gln2386His	p.Q2386H	ENST00000375759	NM_015001.2	2386	caG/caC																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260485	16260485	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	423	471	0	ENST00000375759.3:c.7750del	p.Glu2584LysfsTer7	p.E2584Kfs*7	ENST00000375759	NM_015001.2	2584	Gaa/aa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260485	16260491	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAAAA	GAAAAAA	AAAAAC			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	428	487	0	ENST00000375759.3:c.7750_7756delinsAAAAAC	p.Glu2584LysfsTer7	p.E2584Kfs*7	ENST00000375759	NM_015001.2	2584	GAAAAAAca/AAAAACca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260491	16260491	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	428	487	0	ENST00000375759.3:c.7756A>C	p.Thr2586Pro	p.T2586P	ENST00000375759	NM_015001.2	2586	Aca/Cca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260546	16260546	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	582	576	0	ENST00000375759.3:c.7811C>A	p.Ala2604Asp	p.A2604D	ENST00000375759	NM_015001.2	2604	gCt/gAt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16264028	16264028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	942	864	1	ENST00000375759.3:c.10397G>A	p.Ser3466Asn	p.S3466N	ENST00000375759	NM_015001.2	3466	aGc/aAc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852551	63852551	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	1479	467	0	ENST00000279873.7:c.3329C>G	p.Thr1110Ser	p.T1110S	ENST00000279873	NM_032199.2	1110	aCt/aGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720709	89720709	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs863224909		P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	131	93	0	ENST00000371953.3:c.860C>G	p.Ser287Ter	p.S287*	ENST00000371953	NM_000314.4	287	tCa/tGa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527783	103527783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	225	397	0	ENST00000355739.4:c.3091G>T	p.Ala1031Ser	p.A1031S	ENST00000355739	NM_000123.3	1031	Gcc/Tcc																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873653	35873653	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	166	358	0	ENST00000216797.5:c.198G>A	p.Trp66Ter	p.W66*	ENST00000216797	NM_020529.2	66	tgG/tgA																																																																															
MGA	23269	MSKCC	GRCh37	15	41961164	41961164	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	181	335	0	ENST00000219905.7:c.72C>G	p.Phe24Leu	p.F24L	ENST00000219905	NM_001164273.1	24	ttC/ttG																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43714084	43714084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	295	700	0	ENST00000382044.4:c.4069C>T	p.Pro1357Ser	p.P1357S	ENST00000382044	NM_001141980.1	1357	Ccc/Tcc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123685	11123685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	239	609	3	ENST00000344626.4:c.2335G>A	p.Asp779Asn	p.D779N	ENST00000344626	NM_003072.3	779	Gac/Aac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211387	36211387	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	390	821	0	ENST00000222270.7:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000222270	NM_014727.1	380	Gag/Cag																																																																															
REL	5966	MSKCC	GRCh37	2	61144012	61144013	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	180	287	0	ENST00000295025.8:c.395_396insG	p.Glu134Ter	p.E134*	ENST00000295025	NM_002908.2	132	gtc/gtGc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371721	225371721	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	216	368	0	ENST00000264414.4:c.884-1G>C		p.X295_splice	ENST00000264414	NM_003590.4	295																																																																																
TERT	7015	MSKCC	GRCh37	5	1254522	1254522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	359	824	2	ENST00000310581.5:c.3256C>T	p.Arg1086Cys	p.R1086C	ENST00000310581	NM_198253.2	1086	Cgt/Tgt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117679009	117679009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	254	296	0	ENST00000368508.3:c.3812G>A	p.Arg1271Lys	p.R1271K	ENST00000368508	NM_002944.2	1271	aGg/aAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578533	7578553	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TCTTGTTGAGGGCAGGGGAGT	TCTTGTTGAGGGCAGGGGAGT	-			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	323	897	0	ENST00000269305.4:c.377_397del	p.Tyr126_Met133delinsLeu	p.Y126_M133delinsL	ENST00000269305	NM_001126112.2	126	tACTCCCCTGCCCTCAACAAGAtg/ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0031529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	502	709	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245738	46245738	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	104	536	0	ENST00000334344.6:c.3832A>T	p.Thr1278Ser	p.T1278S	ENST00000334344	NM_152641.2	1278	Acc/Tcc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90630694	90630694	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	102	638	0	ENST00000330062.3:c.792C>A	p.Asp264Glu	p.D264E	ENST00000330062	NM_002168.2	264	gaC/gaA																																																																															
ATR	545	MSKCC	GRCh37	3	142284974	142284974	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1335528590		P-0031529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	162	474	0	ENST00000350721.4:c.281G>C	p.Gly94Ala	p.G94A	ENST00000350721	NM_001184.3	94	gGc/gCc																																																																															
TET2	54790	MSKCC	GRCh37	4	106197115	106197115	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs202035674		P-0031529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	55	338	0	ENST00000380013.4:c.5448A>T	p.Leu1816Phe	p.L1816F	ENST00000380013	NM_001127208.2	1816	ttA/ttT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934874		P-0031535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	20	671	0	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578179	7578179	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0031560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	602	746	0	ENST00000269305.4:c.670G>T	p.Glu224Ter	p.E224*	ENST00000269305	NM_001126112.2	224	Gag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115967	8115968	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	112	327	0	ENST00000346208.3:c.1315dup	p.Val439GlyfsTer68	p.V439Gfs*68	ENST00000346208		438	atg/atGg																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519308	137519308	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	211	528	0	ENST00000367739.4:c.1330G>T	p.Glu444Ter	p.E444*	ENST00000367739	NM_000416.2	444	Gag/Tag																																																																															
RXRA	6256	MSKCC	GRCh37	9	137321067	137321067	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	100	580	0	ENST00000481739.1:c.1024G>A	p.Val342Met	p.V342M	ENST00000481739	NM_002957.4	342	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578512	7578512	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	962	708	0	ENST00000269305.4:c.418del	p.Thr140ProfsTer30	p.T140Pfs*30	ENST00000269305	NM_001126112.2	140	Acc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0031714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	270	573	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133201368	133201368	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	268	592	0	ENST00000320574.5:c.6776G>C	p.Arg2259Pro	p.R2259P	ENST00000320574	NM_006231.2	2259	cGg/cCg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751709	57751878	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAACTCAAGATTATTTTCCAATTCCTGTAATCTTACTACTTCTATGTTAAATTAAGCTACAAAGTAAATTGACTTAAATTATTATGTATTTAGCACTGGCATTTCGAGTTTCATTATTTAAAATACGATTGACAACCACTTACATTCACTGCTGCTGCTACAGCTGCCA	AGAACTCAAGATTATTTTCCAATTCCTGTAATCTTACTACTTCTATGTTAAATTAAGCTACAAAGTAAATTGACTTAAATTATTATGTATTTAGCACTGGCATTTCGAGTTTCATTATTTAAAATACGATTGACAACCACTTACATTCACTGCTGCTGCTACAGCTGCCA	-			P-0031714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	68	140	0	ENST00000274289.3:c.1359_1385-103del		p.X453_splice	ENST00000274289	NM_006622.3	453																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157488183	157488183	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	99	517	0	ENST00000346085.5:c.2889T>G	p.Ser963Arg	p.S963R	ENST00000346085	NM_020732.3	963	agT/agG																																																																															
TET1	80312	MSKCC	GRCh37	10	70332108	70332108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140156594		P-0031716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	19	265	0	ENST00000373644.4:c.13C>T	p.Arg5Cys	p.R5C	ENST00000373644	NM_030625.2	5	Cgc/Tgc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94163112	94163112	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	40	503	0	ENST00000323929.3:c.2035C>G	p.Gln679Glu	p.Q679E	ENST00000323929	NM_005591.3	679	Caa/Gaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443475	49443475	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1266718915		P-0031716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	71	486	0	ENST00000301067.7:c.3896G>A	p.Arg1299His	p.R1299H	ENST00000301067	NM_003482.3	1299	cGc/cAc																																																																															
CBFB	865	MSKCC	GRCh37	16	67100590	67100590	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0031716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	30	439	0	ENST00000412916.2:c.288T>A	p.Tyr96Ter	p.Y96*	ENST00000412916		96	taT/taA																																																																															
CIC	23152	MSKCC	GRCh37	19	42796856	42796856	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	43	693	1	ENST00000575354.2:c.3314C>A	p.Ser1105Ter	p.S1105*	ENST00000575354	NM_015125.3	1105	tCa/tAa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969391	44969391	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	113	334	0	ENST00000377967.4:c.4073G>C	p.Cys1358Ser	p.C1358S	ENST00000377967	NM_021140.2	1358	tGc/tCc																																																																															
AR	367	MSKCC	GRCh37	X	66863243	66863243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1034866440		P-0031716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	30	261	0	ENST00000374690.3:c.1762G>A	p.Ala588Thr	p.A588T	ENST00000374690	NM_000044.3	588	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	418	836	1	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881002	37881003	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTCCCCC			P-0031757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	2297	799	0	ENST00000269571.5:c.2339_2340insCGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	-/GGCTCCCCC																																																																															
NSD1	64324	MSKCC	GRCh37	5	176631283	176631283	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	71	433	0	ENST00000439151.2:c.1226A>C	p.Tyr409Ser	p.Y409S	ENST00000439151	NM_022455.4	409	tAt/tCt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	109	412	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434779	99434779	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			6773	431	472	0	ENST00000268035.6:c.866A>G	p.Glu289Gly	p.E289G	ENST00000268035	NM_000875.3	289	gAg/gGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579362	7579362	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057523496		P-0031871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	203	575	0	ENST00000269305.4:c.325T>G	p.Phe109Val	p.F109V	ENST00000269305	NM_001126112.2	109	Ttc/Gtc																																																																															
ATM	472	MSKCC	GRCh37	11	108122649	108122649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	71	363	0	ENST00000278616.4:c.1693G>A	p.Glu565Lys	p.E565K	ENST00000278616	NM_000051.3	565	Gaa/Aaa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23634330	23634330	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	86	552	0	ENST00000261584.4:c.2956G>C	p.Asp986His	p.D986H	ENST00000261584	NM_024675.3	986	Gat/Cat																																																																															
BRCA1	672	MSKCC	GRCh37	17	41242998	41242998	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80357071		P-0031871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	50	436	0	ENST00000357654.3:c.4148C>T	p.Ser1383Leu	p.S1383L	ENST00000357654	NM_007294.3	1383	tCa/tTa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243023	41243213	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACTCTCACACCCAGATGCTGCTTCACCTTAAATAACAAAAACAGAGGTTCAGATGTAAAAGCAGACTATAAACGCTGCAACTTGCTGTGTCTTTTTCTTCTCATTGGCAGGACTGGATTTACTTTCATGTCACACAAAATGATTAAATTCCTTGCTTTGGGACACCTGGATTTGCTTTTATAAAATGAAA	CACTCTCACACCCAGATGCTGCTTCACCTTAAATAACAAAAACAGAGGTTCAGATGTAAAAGCAGACTATAAACGCTGCAACTTGCTGTGTCTTTTTCTTCTCATTGGCAGGACTGGATTTACTTTCATGTCACACAAAATGATTAAATTCCTTGCTTTGGGACACCTGGATTTGCTTTTATAAAATGAAA	-			P-0031871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	46	437	0	ENST00000357654.3:c.4097-164_4123del		p.X1366_splice	ENST00000357654	NM_007294.3	1366																																																																																
ALK	238	MSKCC	GRCh37	2	29451761	29451761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	86	506	0	ENST00000389048.3:c.2804G>T	p.Gly935Val	p.G935V	ENST00000389048	NM_004304.4	935	gGa/gTa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99136516	99136516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	94	500	1	ENST00000074304.5:c.5C>T	p.Thr2Ile	p.T2I	ENST00000074304	NM_001134224.1	2	aCa/aTa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37038154	37038154	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	29	189	0	ENST00000231790.2:c.161G>C	p.Gly54Ala	p.G54A	ENST00000231790	NM_000249.3	54	gGa/gCa																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7978975	7978975	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769562383		P-0031936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	667	638	1	ENST00000319144.4:c.1592C>T	p.Pro531Leu	p.P531L	ENST00000319144	NM_001139.2	531	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	790	685	0	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502163	157502163	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	162	527	0	ENST00000346085.5:c.3196G>T	p.Glu1066Ter	p.E1066*	ENST00000346085	NM_020732.3	1066	Gag/Tag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390861	139390861	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	664	788	1	ENST00000277541.6:c.7330C>T	p.Gln2444Ter	p.Q2444*	ENST00000277541	NM_017617.3	2444	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100406	8100406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	118	782	0	ENST00000346208.3:c.380C>A	p.Pro127Gln	p.P127Q	ENST00000346208		127	cCg/cAg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376221	118376221	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	144	470	0	ENST00000534358.1:c.9614del	p.Ser3205ThrfsTer10	p.S3205Tfs*10	ENST00000534358	NM_005933.3	3205	aGc/ac																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244852	46244852	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	98	718	0	ENST00000334344.6:c.2946C>A	p.Asn982Lys	p.N982K	ENST00000334344	NM_152641.2	982	aaC/aaA																																																																															
NF1	4763	MSKCC	GRCh37	17	29497016	29497016	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0031936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	236	368	0	ENST00000358273.4:c.586+1G>T		p.X196_splice	ENST00000358273	NM_001042492.2	196																																																																																
RNF43	54894	MSKCC	GRCh37	17	56435483	56435483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746033324		P-0031936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	97	795	1	ENST00000407977.2:c.1654C>T	p.Arg552Cys	p.R552C	ENST00000407977		552	Cgc/Tgc																																																																															
CIC	23152	MSKCC	GRCh37	19	42793397	42793397	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767293276		P-0031936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	51	630	1	ENST00000575354.2:c.1199C>T	p.Pro400Leu	p.P400L	ENST00000575354	NM_015125.3	400	cCc/cTc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803356	1803356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	78	668	0	ENST00000260795.2:c.625C>G	p.Gln209Glu	p.Q209E	ENST00000260795		209	Cag/Gag																																																																															
FANCC	2176	MSKCC	GRCh37	9	97912331	97912331	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	170	430	0	ENST00000289081.3:c.560G>C	p.Cys187Ser	p.C187S	ENST00000289081	NM_000136.2	187	tGt/tCt																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871222	35871222	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	34	395	0	ENST00000216797.5:c.951A>T	p.Leu317Phe	p.L317F	ENST00000216797	NM_020529.2	317	ttA/ttT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55210026	55210026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	304	346	0	ENST00000275493.2:c.136G>A	p.Asp46Asn	p.D46N	ENST00000275493	NM_005228.3	46	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112175000	112175000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	76	216	0	ENST00000257430.4:c.3709C>T	p.Gln1237Ter	p.Q1237*	ENST00000257430	NM_000038.5	1237	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242444	55242445	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAAATTCCCGTCGCTATC			P-0032014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	161	440	0	ENST00000275493.2:c.2217_2234dup	p.Ile740_Lys745dup	p.I740_K745dup	ENST00000275493	NM_005228.3	740	-/AAAATTCCCGTCGCTATC																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0032014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	152	467	1	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
HLA-B	3106	MSKCC	GRCh37	6	31324496	31324496	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs2308559		P-0032014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	15	70	0	ENST00000412585.2:c.312C>A	p.Asn104Lys	p.N104K	ENST00000412585	NM_005514.6	104	aaC/aaA																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627453	14627453	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	227	682	0	ENST00000254322.2:c.617T>A	p.Ile206Asn	p.I206N	ENST00000254322	NM_006145.1	206	aTc/aAc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139818337	139818337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	75	641	0	ENST00000247668.2:c.1172G>A	p.Cys391Tyr	p.C391Y	ENST00000247668	NM_021138.3	391	tGt/tAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0032044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	31	296	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372254	55372254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1358462345		P-0032044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	22	165	0	ENST00000297316.4:c.944C>T	p.Pro315Leu	p.P315L	ENST00000297316	NM_022454.3	315	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579485	7579485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs869312782		P-0032044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	161	748	0	ENST00000269305.4:c.202G>T	p.Glu68Ter	p.E68*	ENST00000269305	NM_001126112.2	68	Gag/Tag																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31368230	31368230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766920119		P-0032044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	187	535	1	ENST00000328111.2:c.101C>T	p.Ser34Leu	p.S34L	ENST00000328111	NM_006892.3	34	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0032065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	245	522	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
NF1	4763	MSKCC	GRCh37	17	29553590	29553591	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTGAGGAAGCAGA			P-0032065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	65	233	0	ENST00000358273.4:c.2141_2154dup	p.Ile719ValfsTer34	p.I719Vfs*34	ENST00000358273	NM_001042492.2	713	-/TGTGAGGAAGCAGA																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622018	1622143	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCGCCCACCCCCTGCCCCCTGCCCTGGGTCCTACCATACGCTCGTGCTGGTGCAGGCCACCAAACGTGCTGCTGCTTCCACTGCTGCCCACCGGGCCGCTACCGGGCGGGAGGGGCAGCGGGGAT	TCCGCCCACCCCCTGCCCCCTGCCCTGGGTCCTACCATACGCTCGTGCTGGTGCAGGCCACCAAACGTGCTGCTGCTTCCACTGCTGCCCACCGGGCCGCTACCGGGCGGGAGGGGCAGCGGGGAT	-			P-0032065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	166	536	2	ENST00000344749.5:c.732_822+35del		p.X244_splice	ENST00000344749	NM_001136139.2	244																																																																																
IRS1	3667	MSKCC	GRCh37	2	227660637	227660637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	197	476	1	ENST00000305123.5:c.2818G>A	p.Glu940Lys	p.E940K	ENST00000305123	NM_005544.2	940	Gag/Aag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527327	157527330	+	protein_altering_variant	In_Frame_Del	DEL	CGAG	CGAG	T			P-0032065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	144	333	1	ENST00000346085.5:c.5052_5055delinsT	p.Glu1685del	p.E1685del	ENST00000346085	NM_020732.3	1684	gtCGAG/gtT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	54	380	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ALK	238	MSKCC	GRCh37	2	29443675	29443675	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1034835558		P-0032076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	33	459	2	ENST00000389048.3:c.3542G>A	p.Arg1181His	p.R1181H	ENST00000389048	NM_004304.4	1181	cGc/cAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375401	118375401	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	42	284	0	ENST00000534358.1:c.8794T>C	p.Ser2932Pro	p.S2932P	ENST00000534358	NM_005933.3	2932	Tct/Cct																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712510	43712511	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0032076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	85	494	0	ENST00000382044.4:c.4673_4674del	p.Phe1558Ter	p.F1558*	ENST00000382044	NM_001141980.1	1558	tTC/t																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549890	187549890	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	55	419	0	ENST00000441802.2:c.4351G>T	p.Asp1451Tyr	p.D1451Y	ENST00000441802	NM_005245.3	1451	Gac/Tac																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402561	20402561	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	31	322	0	ENST00000346618.3:c.98T>C	p.Met33Thr	p.M33T	ENST00000346618	NM_001949.4	33	aTg/aCg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045002	47045003	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0032076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	87	342	1	ENST00000329236.7:c.2094_2095delinsTT	p.His699Tyr	p.H699Y	ENST00000329236	NM_001204466.1	698	cgGCac/cgTTac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0032098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	461	754	6	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143094782	143094783	+	splice_donor_variant,intron_variant	Splice_Site	DNP	TA	TA	AC			P-0032098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	110	364	2	ENST00000262992.4:c.1359+2_1359+3delinsGT		p.X453_splice	ENST00000262992	NM_001101669.1	453																																																																																
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	134	516	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0032156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	127	599	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587782289		P-0032230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	228	579	0	ENST00000269305.4:c.706T>C	p.Tyr236His	p.Y236H	ENST00000269305	NM_001126112.2	236	Tac/Cac																																																																															
KIT	3815	MSKCC	GRCh37	4	55602967	55602967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	19	266	0	ENST00000288135.5:c.2677G>A	p.Glu893Lys	p.E893K	ENST00000288135	NM_000222.2	893	Gaa/Aaa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991999	72991999	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0032230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	44	558	0	ENST00000268489.5:c.2046C>G	p.Tyr682Ter	p.Y682*	ENST00000268489	NM_006885.3	682	taC/taG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0032233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	210	605	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189387	56189387	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	346	520	0	ENST00000399503.3:c.4421del	p.Pro1474LeufsTer16	p.P1474Lfs*16	ENST00000399503	NM_005921.1	1473	atC/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0032269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	285	609	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14380346	14380346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1523	1065	214	0	ENST00000256196.4:c.71G>A	p.Gly24Asp	p.G24D	ENST00000256196		24	gGc/gAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492920	56492920	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	19	194	0	ENST00000407977.2:c.19C>G	p.Leu7Val	p.L7V	ENST00000407977		7	Ctg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs863224499		P-0032336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	552	513	0	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15281281	15281281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776163983		P-0032336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	365	533	0	ENST00000263388.2:c.4975G>A	p.Val1659Ile	p.V1659I	ENST00000263388	NM_000435.2	1659	Gtc/Atc																																																																															
STK11	6794	MSKCC	GRCh37	19	1226539	1226539	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	235	523	1	ENST00000326873.7:c.1195C>T	p.Gln399Ter	p.Q399*	ENST00000326873	NM_000455.4	399	Cag/Tag																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289324	33289324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	74	340	2	ENST00000374542.5:c.228G>A	p.Met76Ile	p.M76I	ENST00000374542	NM_001141970.1	76	atG/atA																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455054	50455054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	225	286	0	ENST00000331340.3:c.601C>T	p.His201Tyr	p.H201Y	ENST00000331340	NM_006060.4	201	Cac/Tac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933376	39933376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	44	284	0	ENST00000378444.4:c.1223G>A	p.Gly408Glu	p.G408E	ENST00000378444	NM_001123385.1	408	gGg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578234	7578234	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs786202222		P-0032410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	191	525	0	ENST00000269305.4:c.615T>A	p.Tyr205Ter	p.Y205*	ENST00000269305	NM_001126112.2	205	taT/taA																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612665	228612665	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	195	612	0	ENST00000366696.1:c.362T>C	p.Met121Thr	p.M121T	ENST00000366696	NM_003493.2	121	aTg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578229	7578229	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	186	515	0	ENST00000269305.4:c.620A>G	p.Asp207Gly	p.D207G	ENST00000269305	NM_001126112.2	207	gAt/gGt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267723	198267723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	47	267	0	ENST00000335508.6:c.1756G>A	p.Asp586Asn	p.D586N	ENST00000335508	NM_012433.2	586	Gat/Aat																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43752288	43752288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	53	390	0	ENST00000523873.1:c.689del	p.Pro230ArgfsTer?	p.P230Rfs*?	ENST00000523873		230	Ccg/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0032467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	98	685	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0032467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	46	459	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	49	226	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11300486	11300486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	84	693	0	ENST00000361445.4:c.1660C>T	p.His554Tyr	p.H554Y	ENST00000361445	NM_004958.3	554	Cac/Tac																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804303	46804303	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	84	632	0	ENST00000290295.7:c.704A>C	p.Tyr235Ser	p.Y235S	ENST00000290295	NM_006361.5	235	tAt/tCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	88	737	0	ENST00000269305.4:c.379T>C	p.Ser127Pro	p.S127P	ENST00000269305	NM_001126112.2	127	Tcc/Ccc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579356	7579356	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	109	625	0	ENST00000269305.4:c.331C>A	p.Leu111Met	p.L111M	ENST00000269305	NM_001126112.2	111	Ctg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431943	49431943	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	113	809	0	ENST00000301067.7:c.9196T>G	p.Phe3066Val	p.F3066V	ENST00000301067	NM_003482.3	3066	Ttc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578545	7578546	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0032478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	89	760	3	ENST00000269305.4:c.384_385delinsCT	p.Ala129Ser	p.A129S	ENST00000269305	NM_001126112.2	128	ccTGcc/ccCTcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435471	49435471	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	189	747	0	ENST00000301067.7:c.6201C>G	p.Asn2067Lys	p.N2067K	ENST00000301067	NM_003482.3	2067	aaC/aaG																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118941	115118941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	44	299	0	ENST00000257566.3:c.400C>A	p.Pro134Thr	p.P134T	ENST00000257566	NM_016569.3	134	Cct/Act																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953517	32953517	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0032480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	71	515	0	ENST00000380152.3:c.8818A>T	p.Lys2940Ter	p.K2940*	ENST00000380152		2940	Aaa/Taa																																																																															
CIC	23152	MSKCC	GRCh37	19	42791019	42791019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	21	550	0	ENST00000575354.2:c.164C>G	p.Pro55Arg	p.P55R	ENST00000575354	NM_015125.3	55	cCg/cGg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279876	46279876	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	81	621	0	ENST00000371998.3:c.3802C>T	p.Gln1268Ter	p.Q1268*	ENST00000371998		1268	Caa/Taa																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84384033	84384033	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1454080702		P-0032480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	100	678	0	ENST00000321945.7:c.819C>A	p.Asp273Glu	p.D273E	ENST00000321945	NM_139076.2	273	gaC/gaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs786201057		P-0032500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	261	603	2	ENST00000269305.4:c.374C>A	p.Thr125Lys	p.T125K	ENST00000269305	NM_001126112.2	125	aCg/aAg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134514496	134514496	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1245944825		P-0032500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	208	435	1	ENST00000398015.3:c.23T>C	p.Leu8Pro	p.L8P	ENST00000398015	NM_004441.4	8	cTg/cCg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711939	89711965	+	inframe_deletion	In_Frame_Del	DEL	TGGATTATAGACCAGTGGCACTGTTGT	TGGATTATAGACCAGTGGCACTGTTGT	-			P-0032500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	313	631	2	ENST00000371953.3:c.558_584del	p.Asp187_Phe195del	p.D187_F195del	ENST00000371953	NM_000314.4	186	cTGGATTATAGACCAGTGGCACTGTTGTtt/ctt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967092	25967092	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	289	615	0	ENST00000435504.4:c.2114G>T	p.Gly705Val	p.G705V	ENST00000435504		705	gGt/gTt																																																																															
ERG	2078	MSKCC	GRCh37	21	39772522	39772522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	349	674	1	ENST00000288319.7:c.719C>T	p.Ala240Val	p.A240V	ENST00000288319	NM_182918.3	240	gCt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0032550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	41	413	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38957801	38957801	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	54	371	0	ENST00000357387.3:c.2452C>G	p.Leu818Val	p.L818V	ENST00000357387	NM_152756.3	818	Ctg/Gtg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056498	26056498	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	47	295	0	ENST00000343677.2:c.159G>T	p.Glu53Asp	p.E53D	ENST00000343677	NM_005319.3	53	gaG/gaT																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157150470	157150470	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	57	545	0	ENST00000346085.5:c.1652G>C	p.Gly551Ala	p.G551A	ENST00000346085	NM_020732.3	551	gGc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs867114783		P-0032607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	350	724	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522274	157522274	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs567836947		P-0032607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	224	652	0	ENST00000346085.5:c.4546G>A	p.Val1516Ile	p.V1516I	ENST00000346085	NM_020732.3	1516	Gtc/Atc																																																																															
TP63	8626	MSKCC	GRCh37	3	189582030	189582030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	99	353	0	ENST00000264731.3:c.589G>A	p.Glu197Lys	p.E197K	ENST00000264731	NM_003722.4	197	Gaa/Aaa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038881	12038881	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	35	283	0	ENST00000396373.4:c.1174G>C	p.Glu392Gln	p.E392Q	ENST00000396373	NM_001987.4	392	Gag/Cag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416417	49416417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	151	615	1	ENST00000301067.7:c.16294C>T	p.Arg5432Trp	p.R5432W	ENST00000301067	NM_003482.3	5432	Cgg/Tgg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52443761	52443761	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0032607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	294	548	1	ENST00000460680.1:c.38-2A>G		p.X13_splice	ENST00000460680	NM_004656.3	13																																																																																
DAXX	1616	MSKCC	GRCh37	6	33286516	33286536	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	GCAGCTAATCAGAGTCTGAGA	GCAGCTAATCAGAGTCTGAGA	-			P-0032607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	166	333	0	ENST00000374542.5:c.2207_*4del		p.*736*	ENST00000374542	NM_001141970.1	736																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8389335	8389335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	161	725	0	ENST00000356435.5:c.4283C>T	p.Thr1428Ile	p.T1428I	ENST00000356435		1428	aCa/aTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8436624	8436624	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	130	601	0	ENST00000356435.5:c.4054A>C	p.Asn1352His	p.N1352H	ENST00000356435		1352	Aat/Cat																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44894177	44894201	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	ATTTTCAGTTAGCTTTGGTTGACTG	ATTTTCAGTTAGCTTTGGTTGACTG	-			P-0032607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	77	642	0	ENST00000377967.4:c.566_590del	p.His189LeufsTer45	p.H189Lfs*45	ENST00000377967	NM_021140.2	189	cATTTTCAGTTAGCTTTGGTTGACTGt/ct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	18	515	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	10	443	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89337314	89337314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	24	393	0	ENST00000301030.4:c.7717G>A	p.Asp2573Asn	p.D2573N	ENST00000301030	NM_001256183.1	2573	Gac/Aac																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564633	86564633	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	36	609	0	ENST00000274376.6:c.365C>A	p.Ser122Ter	p.S122*	ENST00000274376	NM_002890.2	122	tCg/tAg																																																																															
EP300	2033	MSKCC	GRCh37	22	41533772	41533772	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137853038		P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	20	420	0	ENST00000263253.7:c.1738C>T	p.Arg580Ter	p.R580*	ENST00000263253	NM_001429.3	580	Cga/Tga																																																																															
RAD51	5888	MSKCC	GRCh37	15	41011095	41011095	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	34	458	0	ENST00000267868.3:c.528G>C	p.Glu176Asp	p.E176D	ENST00000267868	NM_002875.4	176	gaG/gaC																																																																															
TCF3	6929	MSKCC	GRCh37	19	1611758	1611758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	48	649	0	ENST00000344749.5:c.1904C>T	p.Ser635Leu	p.S635L	ENST00000344749	NM_001136139.2	635	tCa/tTa																																																																															
ATM	472	MSKCC	GRCh37	11	108168092	108168092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	26	294	0	ENST00000278616.4:c.4988G>A	p.Gly1663Asp	p.G1663D	ENST00000278616	NM_000051.3	1663	gGt/gAt																																																																															
C1orf147	574431	MSKCC	GRCh37	1	206666374	206666374	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	40	535	1	ENST00000367119.1:c.160C>A	p.Pro54Thr	p.P54T	ENST00000367119		54	Cct/Act																																																																															
PAK1	5058	MSKCC	GRCh37	11	77066809	77066809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	52	388	0	ENST00000356341.3:c.676G>A	p.Glu226Lys	p.E226K	ENST00000356341	NM_002576.4	226	Gaa/Aaa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	464338	464338	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	40	598	0	ENST00000399788.2:c.856C>G	p.Leu286Val	p.L286V	ENST00000399788	NM_001042603.1	286	Ctc/Gtc																																																																															
RB1	5925	MSKCC	GRCh37	13	48916825	48916825	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	25	349	0	ENST00000267163.4:c.355G>T	p.Glu119Ter	p.E119*	ENST00000267163	NM_000321.2	119	Gag/Tag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068864	30068864	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	11	489	0	ENST00000331968.5:c.2065C>T	p.Gln689Ter	p.Q689*	ENST00000331968	NM_002742.2	689	Cag/Tag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2133764	2133764	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1064793797		P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	37	681	0	ENST00000219476.3:c.3952G>T	p.Glu1318Ter	p.E1318*	ENST00000219476	NM_000548.3	1318	Gag/Tag																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647331	23647331	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	33	582	0	ENST00000261584.4:c.536A>G	p.Gln179Arg	p.Q179R	ENST00000261584	NM_024675.3	179	cAg/cGg																																																																															
NF1	4763	MSKCC	GRCh37	17	29483022	29483022	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs771764281		P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	14	314	1	ENST00000358273.4:c.82C>T	p.Gln28Ter	p.Q28*	ENST00000358273	NM_001042492.2	28	Cag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37865624	37865624	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	66	619	0	ENST00000269571.5:c.493G>T	p.Asp165Tyr	p.D165Y	ENST00000269571		165	Gac/Tac																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095749	178095749	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	19	381	0	ENST00000397062.3:c.1582G>C	p.Asp528His	p.D528H	ENST00000397062	NM_006164.4	528	Gat/Cat																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252903	36252904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	33	380	0	ENST00000300305.3:c.458dup	p.Asn153LysfsTer7	p.N153Kfs*7	ENST00000300305		153	aac/aaAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41523735	41523735	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	28	577	0	ENST00000263253.7:c.1151C>G	p.Ser384Ter	p.S384*	ENST00000263253	NM_001429.3	384	tCa/tGa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165347	47165347	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	19	399	0	ENST00000409792.3:c.779C>G	p.Ser260Cys	p.S260C	ENST00000409792	NM_014159.6	260	tCt/tGt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808320	1808320	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760292339		P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	47	845	0	ENST00000260795.2:c.2078C>T	p.Ser693Phe	p.S693F	ENST00000260795		693	tCc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112176210	112176210	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs529480958		P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	45	351	1	ENST00000257430.4:c.4919G>A	p.Arg1640Gln	p.R1640Q	ENST00000257430	NM_000038.5	1640	cGg/cAg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149439357	149439357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	52	578	0	ENST00000286301.3:c.2038G>A	p.Glu680Lys	p.E680K	ENST00000286301	NM_005211.3	680	Gag/Aag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056403	180056403	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	30	488	0	ENST00000261937.6:c.841G>C	p.Glu281Gln	p.E281Q	ENST00000261937	NM_182925.4	281	Gag/Cag																																																																															
DIS3	22894	MSKCC	GRCh37	13	73345240	73345240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	135	273	0	ENST00000377767.4:c.1649C>T	p.Ser550Phe	p.S550F	ENST00000377767	NM_014953.3	550	tCc/tTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0032682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	97	297	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217652	7217654	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0032682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	21	416	1	ENST00000380728.2:c.273_275del	p.Lys92del	p.K92del	ENST00000380728		91	aaGAAa/aaa																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871599	35871599	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0032682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	53	259	0	ENST00000216797.5:c.906+1G>T		p.X302_splice	ENST00000216797	NM_020529.2	302																																																																																
TP53	7157	MSKCC	GRCh37	17	7572926	7572935	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	GTCAGTCTGA	GTCAGTCTGA	-			P-0032682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	53	433	0	ENST00000269305.4:c.1174_*1del		p.*392*	ENST00000269305	NM_001126112.2	392																																																																																
SRSF2	6427	MSKCC	GRCh37	17	74732265	74732265	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	94	227	0	ENST00000359995.5:c.644A>T	p.Glu215Val	p.E215V	ENST00000359995	NM_001195427.1	215	gAg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	117	465	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0032702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	33	502	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0032702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	308	669	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0032702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	54	239	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	79	313	0	ENST00000257430.4:c.4473del	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
NF1	4763	MSKCC	GRCh37	17	29552198	29552198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	28	442	0	ENST00000358273.4:c.1931C>T	p.Ser644Phe	p.S644F	ENST00000358273	NM_001042492.2	644	tCc/tTc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450363	50450363	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1441542459		P-0032702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	205	427	0	ENST00000331340.3:c.547C>T	p.Arg183Cys	p.R183C	ENST00000331340	NM_006060.4	183	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229244	36229245	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAATGCCGCCCGCTTCAT			P-0032702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	67	674	0	ENST00000222270.7:c.7938_7955dup	p.Ala2647_Asn2652dup	p.A2647_N2652dup	ENST00000222270	NM_014727.1	2647	ggc/ggCAATGCCGCCCGCTTCATc																																																																															
ATRX	546	MSKCC	GRCh37	X	76856028	76856028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	97	386	0	ENST00000373344.5:c.5572G>A	p.Gly1858Ser	p.G1858S	ENST00000373344	NM_000489.3	1858	Ggc/Agc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0032721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	125	422	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578509	7578509	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519978		P-0032721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	250	574	0	ENST00000269305.4:c.421T>C	p.Cys141Arg	p.C141R	ENST00000269305	NM_001126112.2	141	Tgc/Cgc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163318754	163318755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	100	329	0	ENST00000271452.3:c.1150dup	p.Arg384LysfsTer6	p.R384Kfs*6	ENST00000271452	NM_145697.2	382	gaa/gAaa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213345	36213345	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	121	619	0	ENST00000222270.7:c.2542T>C	p.Ser848Pro	p.S848P	ENST00000222270	NM_014727.1	848	Tcg/Ccg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228801	36228801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	111	587	0	ENST00000222270.7:c.7700G>A	p.Arg2567His	p.R2567H	ENST00000222270	NM_014727.1	2567	cGt/cAt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342860	87342860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	71	436	0	ENST00000277120.3:c.1145C>T	p.Pro382Leu	p.P382L	ENST00000277120		382	cCt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578509	7578509	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519978		P-0032753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	182	603	0	ENST00000269305.4:c.421T>G	p.Cys141Gly	p.C141G	ENST00000269305	NM_001126112.2	141	Tgc/Ggc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023249	27023249	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	44	113	0	ENST00000324856.7:c.355G>T	p.Glu119Ter	p.E119*	ENST00000324856	NM_006015.4	119	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610093	10610093	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	143	499	1	ENST00000171111.5:c.617A>G	p.Tyr206Cys	p.Y206C	ENST00000171111	NM_203500.1	206	tAc/tGc																																																																															
NF1	4763	MSKCC	GRCh37	17	29562747	29562747	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137854556		P-0032779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	112	435	0	ENST00000358273.4:c.3827G>A	p.Arg1276Gln	p.R1276Q	ENST00000358273	NM_001042492.2	1276	cGa/cAa																																																																															
RB1	5925	MSKCC	GRCh37	13	48941629	48941629	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs1131690860		P-0032779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	48	196	0	ENST00000267163.4:c.940-1G>A		p.X314_splice	ENST00000267163	NM_000321.2	314																																																																																
CDH1	999	MSKCC	GRCh37	16	68857402	68857403	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACCTTAGAGGTCAGCGTGTGTGACTGGG			P-0032779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	116	438	0	ENST00000261769.5:c.2063_2064insGGACCTTAGAGGTCAGCGTGTGTGACTG	p.Cys688TrpfsTer9	p.C688Wfs*9	ENST00000261769	NM_004360.3	679	-/ACCTTAGAGGTCAGCGTGTGTGACTGGG																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252853	36252854	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CT			P-0032779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	176	249	0	ENST00000300305.3:c.507_508dup	p.Gly170GlufsTer7	p.G170Efs*7	ENST00000300305		170	ggg/gAGgg																																																																															
ABL1	25	MSKCC	GRCh37	9	133759580	133759580	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771154274		P-0032779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	100	538	0	ENST00000318560.5:c.1903G>A	p.Glu635Lys	p.E635K	ENST00000318560	NM_005157.4	635	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	80	226	1	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0032801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	181	634	1	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
MPL	4352	MSKCC	GRCh37	1	43814548	43814548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1445777626		P-0032801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	102	346	0	ENST00000372470.3:c.1343C>T	p.Thr448Ile	p.T448I	ENST00000372470	NM_005373.2	448	aCc/aTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16235922	16235922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	100	502	0	ENST00000375759.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000375759	NM_015001.2	330	Gag/Aag																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	408	493	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643371	38643371	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	83	508	0	ENST00000299084.4:c.841C>G	p.Gln281Glu	p.Q281E	ENST00000299084	NM_152594.2	281	Cag/Gag																																																																															
MGA	23269	MSKCC	GRCh37	15	42041686	42041686	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	163	455	2	ENST00000219905.7:c.5881C>T	p.Gln1961Ter	p.Q1961*	ENST00000219905	NM_001164273.1	1961	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	282	627	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584560	48584560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	219	474	0	ENST00000342988.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000342988	NM_005359.5	245	Cag/Tag																																																																															
NF2	4771	MSKCC	GRCh37	22	30057292	30057292	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	145	397	0	ENST00000338641.4:c.774G>C	p.Trp258Cys	p.W258C	ENST00000338641	NM_000268.3	258	tgG/tgC																																																																															
EP300	2033	MSKCC	GRCh37	22	41564849	41564849	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	221	634	0	ENST00000263253.7:c.4150G>C	p.Asp1384His	p.D1384H	ENST00000263253	NM_001429.3	1384	Gac/Cac																																																																															
MLH1	4292	MSKCC	GRCh37	3	37035095	37035095	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	188	414	0	ENST00000231790.2:c.57C>G	p.Ile19Met	p.I19M	ENST00000231790	NM_000249.3	19	atC/atG																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098382	47098382	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	234	634	0	ENST00000409792.3:c.6892C>T	p.Gln2298Ter	p.Q2298*	ENST00000409792	NM_014159.6	2298	Caa/Taa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164118	47164118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	116	362	0	ENST00000409792.3:c.2008G>T	p.Glu670Ter	p.E670*	ENST00000409792	NM_014159.6	670	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112178410	112178410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	111	311	1	ENST00000257430.4:c.7119G>A	p.Met2373Ile	p.M2373I	ENST00000257430	NM_000038.5	2373	atG/atA																																																																															
RAD50	10111	MSKCC	GRCh37	5	131911487	131911487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	146	382	0	ENST00000265335.6:c.232G>T	p.Val78Leu	p.V78L	ENST00000265335		78	Gtg/Ttg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	134	346	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859845	151859845	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1421487755		P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	143	395	0	ENST00000262189.6:c.10817G>C	p.Arg3606Thr	p.R3606T	ENST00000262189	NM_170606.2	3606	aGa/aCa																																																																															
ATRX	546	MSKCC	GRCh37	X	76812923	76812964	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TTTGGCAGCATGGGAGTATCCCTCTTCTTCTTCTTTTCTGAA	TTTGGCAGCATGGGAGTATCCCTCTTCTTCTTCTTTTCTGAA	-			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	58	611	0	ENST00000373344.5:c.6657_6698del	p.Asn2219_Pro2232del	p.N2219_P2232del	ENST00000373344	NM_000489.3	2219	aaTTCAGAAAAGAAGAAGAAGAGGGATACTCCCATGCTGCCAAAg/aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060610	38060611	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	195	994	0	ENST00000250448.2:c.1378dup	p.Tyr460LeufsTer98	p.Y460Lfs*98	ENST00000250448	NM_004496.3	460	tac/tTac																																																																															
CDH1	999	MSKCC	GRCh37	16	68857530	68857530	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0032957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	111	391	0	ENST00000261769.5:c.2164+1G>A		p.X722_splice	ENST00000261769	NM_004360.3	722																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49447791	49447791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	99	441	0	ENST00000301067.7:c.643C>T	p.Pro215Ser	p.P215S	ENST00000301067	NM_003482.3	215	Cca/Tca																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341506	89341506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	104	474	0	ENST00000301030.4:c.7564G>A	p.Glu2522Lys	p.E2522K	ENST00000301030	NM_001256183.1	2522	Gag/Aag																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252856	36252856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0032957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	86	278	0	ENST00000300305.3:c.506G>T	p.Arg169Ile	p.R169I	ENST00000300305		169	aGa/aTa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505513	25505513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	52	673	1	ENST00000264709.3:c.245C>T	p.Ser82Leu	p.S82L	ENST00000264709	NM_175629.2	82	tCa/tTa																																																																															
MET	4233	MSKCC	GRCh37	7	116411927	116411976	+	frameshift_variant	Frame_Shift_Del	DEL	ACGATGCAAGAGTACACACTCCTCATTTGGATAGGCTTGTAAGTGCCCGA	ACGATGCAAGAGTACACACTCCTCATTTGGATAGGCTTGTAAGTGCCCGA	-			P-0033072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	160	847	0	ENST00000397752.3:c.2913_2962del	p.Tyr971Ter	p.Y971*	ENST00000397752	NM_000245.2	971	tACGATGCAAGAGTACACACTCCTCATTTGGATAGGCTTGTAAGTGCCCGA/t																																																																															
TP53	7157	MSKCC	GRCh37	17	7577157	7577157	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0033126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	205	422	0	ENST00000269305.4:c.783-2A>C		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
MGA	23269	MSKCC	GRCh37	15	42042193	42042193	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	85	482	1	ENST00000219905.7:c.6390del	p.Pro2131GlnfsTer48	p.P2131Qfs*48	ENST00000219905	NM_001164273.1	2130	Ttt/tt																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913233		P-0033175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	229	789	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627647	37627647	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	226	624	1	ENST00000447079.4:c.1562del	p.Ser521Ter	p.S521*	ENST00000447079	NM_015083.1	521	tCa/ta																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250471	26250471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	116	504	1	ENST00000446824.2:c.363G>T	p.Met121Ile	p.M121I	ENST00000446824	NM_021018.2	121	atG/atT																																																																															
BTK	695	MSKCC	GRCh37	X	100615644	100615644	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	137	358	0	ENST00000308731.7:c.688G>T	p.Ala230Ser	p.A230S	ENST00000308731	NM_000061.2	230	Gca/Tca																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0033178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	167	233	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039347	47039347	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	196	369	0	ENST00000329236.7:c.739G>C	p.Ala247Pro	p.A247P	ENST00000329236	NM_001204466.1	247	Gcg/Ccg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244361	46244361	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	39	387	0	ENST00000334344.6:c.2455C>T	p.Gln819Ter	p.Q819*	ENST00000334344	NM_152641.2	819	Caa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108114719	108114719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	65	435	0	ENST00000278616.4:c.536C>T	p.Ser179Leu	p.S179L	ENST00000278616	NM_000051.3	179	tCa/tTa																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78425869	78425869	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0033178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	96	326	0	ENST00000370768.2:c.1576G>T	p.Ala526Ser	p.A526S	ENST00000370768	NM_003902.3	526	Gct/Tct																																																																															
TET1	80312	MSKCC	GRCh37	10	70405889	70405889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	54	534	0	ENST00000373644.4:c.3403C>T	p.His1135Tyr	p.H1135Y	ENST00000373644	NM_030625.2	1135	Cat/Tat																																																																															
STK11	6794	MSKCC	GRCh37	19	1219321	1219334	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	ACGTATATGGTGAT	ACGTATATGGTGAT	-			P-0033178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	125	450	0	ENST00000326873.7:c.375-2_386del		p.X125_splice	ENST00000326873	NM_000455.4	125																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10600527	10600527	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0033178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	150	468	0	ENST00000171111.5:c.1328A>G	p.Tyr443Cys	p.Y443C	ENST00000171111	NM_203500.1	443	tAt/tGt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170550	11170550	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs773055372		P-0033178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	138	562	0	ENST00000344626.4:c.4757C>G	p.Ser1586Cys	p.S1586C	ENST00000344626	NM_003072.3	1586	tCc/tGc																																																																															
TERT	7015	MSKCC	GRCh37	5	1268709	1268709	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	176	713	0	ENST00000310581.5:c.2508C>G	p.Ile836Met	p.I836M	ENST00000310581	NM_198253.2	836	atC/atG																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0033180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	94	240	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075128	16075128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	46	292	0	ENST00000268712.3:c.424G>A	p.Asp142Asn	p.D142N	ENST00000268712	NM_006311.3	142	Gat/Aat																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26029178	26029194	+	protein_altering_variant	In_Frame_Del	DEL	CATTCAGGCATGCAAGA	CATTCAGGCATGCAAGA	TT			P-0033180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	48	394	2	ENST00000435504.4:c.156_172delinsAA	p.Leu53_Ala58delinsThr	p.L53_A58delinsT	ENST00000435504		52	ccTCTTGCATGCCTGAATGca/ccAAca																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020724	26020724	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1426138687		P-0033180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	38	261	0	ENST00000357647.3:c.7C>T	p.Arg3Cys	p.R3C	ENST00000357647	NM_003529.2	3	Cgc/Tgc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396462	139396462	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	126	695	0	ENST00000277541.6:c.5463G>C	p.Lys1821Asn	p.K1821N	ENST00000277541	NM_017617.3	1821	aaG/aaC																																																																															
ARID2	196528	MSKCC	GRCh37	12	46242716	46242716	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	96	293	0	ENST00000334344.6:c.1678G>T	p.Gly560Ter	p.G560*	ENST00000334344	NM_152641.2	560	Gga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579362	7579363	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	T			P-0033207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	229	460	0	ENST00000269305.4:c.324_325delinsA	p.Phe109SerfsTer14	p.F109Sfs*14	ENST00000269305	NM_001126112.2	108	ggTTtc/ggAtc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	52	352	5	ENST00000342505.4:c.2580dup	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349562	15349562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	48	847	0	ENST00000263377.2:c.4012C>T	p.Arg1338Trp	p.R1338W	ENST00000263377	NM_058243.2	1338	Cgg/Tgg																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288341	21288341	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	102	647	0	ENST00000354336.3:c.586A>G	p.Asn196Asp	p.N196D	ENST00000354336	NM_005207.3	196	Aac/Gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730882026		P-0033300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	173	820	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61710176	61710177	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0033300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	118	398	0	ENST00000401558.2:c.2726_2727dup	p.Ala910LeufsTer22	p.A910Lfs*22	ENST00000401558	NM_003400.3	909	-/CT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0033315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	1415	295	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748576	40748576	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0033315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	95	295	0	ENST00000373198.4:c.2940A>C	p.Gln980His	p.Q980H	ENST00000373198	NM_133170.3	980	caA/caC																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36941068	36941068	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779487638		P-0033315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	176	701	0	ENST00000361632.4:c.271C>T	p.His91Tyr	p.H91Y	ENST00000361632		91	Cac/Tac																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81925123	81925123	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	290	437	0	ENST00000359376.3:c.914A>C	p.Lys305Thr	p.K305T	ENST00000359376	NM_002661.3	305	aAg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578246	7578247	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	359	615	0	ENST00000269305.4:c.602dup	p.Leu201PhefsTer8	p.L201Ffs*8	ENST00000269305	NM_001126112.2	201	ttg/ttTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25978973	25978973	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	190	351	0	ENST00000435504.4:c.950A>G	p.Asp317Gly	p.D317G	ENST00000435504		317	gAt/gGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971147	21971225	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAA	TGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAA	-			P-0033315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	115	352	0	ENST00000304494.5:c.151-18_211del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0033383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	378	1038	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	305	602	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518024	187518024	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147405100		P-0033383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	152	776	3	ENST00000441802.2:c.12670G>A	p.Ala4224Thr	p.A4224T	ENST00000441802	NM_005245.3	4224	Gct/Act																																																																															
RB1	5925	MSKCC	GRCh37	13	49030378	49030378	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs267603840		P-0033383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	235	380	0	ENST00000267163.4:c.1853C>A	p.Ser618Ter	p.S618*	ENST00000267163	NM_000321.2	618	tCa/tAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827804	72827804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	519	1023	0	ENST00000268489.5:c.8777C>T	p.Pro2926Leu	p.P2926L	ENST00000268489	NM_006885.3	2926	cCg/cTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0033417-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			62	10	392	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483984	88483984	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0033417-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			169	11	410	0	ENST00000360948.2:c.1586A>C	p.Tyr529Ser	p.Y529S	ENST00000360948	NM_001012338.2	529	tAt/tCt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224766	36224767	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAG			P-0033417-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			70	21	829	0	ENST00000222270.7:c.7152_7153insCAG	p.His2384_Tyr2385insGln	p.H2384_Y2385insQ	ENST00000222270	NM_014727.1	2384	-/CAG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs876659675		P-0033429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	118	691	0	ENST00000269305.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTc/aCc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11259397	11259397	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	134	656	0	ENST00000361445.4:c.4171C>G	p.Arg1391Gly	p.R1391G	ENST00000361445	NM_004958.3	1391	Cga/Gga																																																																															
APC	324	MSKCC	GRCh37	5	112175096	112175097	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0033429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	43	264	0	ENST00000257430.4:c.3807_3808del	p.Ile1269MetfsTer6	p.I1269Mfs*6	ENST00000257430	NM_000038.5	1269	ATa/a																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621866	1621866	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376627351		P-0033429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	22	621	0	ENST00000344749.5:c.926C>T	p.Pro309Leu	p.P309L	ENST00000344749	NM_001136139.2	309	cCg/cTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7152906	7152906	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761229082		P-0033429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	34	600	0	ENST00000302850.5:c.2062C>T	p.Pro688Ser	p.P688S	ENST00000302850	NM_000208.2	688	Cca/Tca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	495	550	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913407		P-0033465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	366	390	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0033465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	91	239	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
PGR	5241	MSKCC	GRCh37	11	100999551	100999551	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	598	969	0	ENST00000325455.5:c.251A>G	p.Glu84Gly	p.E84G	ENST00000325455	NM_001202474.3	84	gAg/gGg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134112	41134112	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	367	544	0	ENST00000379561.5:c.1516A>G	p.Thr506Ala	p.T506A	ENST00000379561	NM_002015.3	506	Acc/Gcc																																																																															
RB1	5925	MSKCC	GRCh37	13	49039401	49039401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	465	721	0	ENST00000267163.4:c.2386C>T	p.Pro796Ser	p.P796S	ENST00000267163	NM_000321.2	796	Ccc/Tcc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982376	25982376	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	217	348	0	ENST00000435504.4:c.914del	p.Leu305TyrfsTer6	p.L305Yfs*6	ENST00000435504		305	tTa/ta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	63	354	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs587782082		P-0033492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	77	617	0	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060743	38060743	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	54	841	1	ENST00000250448.2:c.1246G>T	p.Asp416Tyr	p.D416Y	ENST00000250448	NM_004496.3	416	Gac/Tac																																																																															
EP300	2033	MSKCC	GRCh37	22	41574649	41574649	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	46	715	0	ENST00000263253.7:c.6934C>G	p.Pro2312Ala	p.P2312A	ENST00000263253	NM_001429.3	2312	Cct/Gct																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520735	176520735	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750637669		P-0033492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	65	550	0	ENST00000292408.4:c.1478G>A	p.Arg493Gln	p.R493Q	ENST00000292408	NM_213647.1	493	cGg/cAg																																																																															
MGA	23269	MSKCC	GRCh37	15	42034816	42034818	+	missense_variant	Missense_Mutation	ONP	TAC	TAC	AAG			P-0033492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	57	571	0	ENST00000219905.7:c.4658_4660delinsAAG	p.Ile1553_Pro1554delinsLysAla	p.I1553_P1554delinsKA	ENST00000219905	NM_001164273.1	1553	aTACct/aAAGct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0033496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	179	563	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
INHA	3623	MSKCC	GRCh37	2	220439769	220439769	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111982983		P-0033496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	213	698	0	ENST00000243786.2:c.622C>T	p.Arg208Trp	p.R208W	ENST00000243786	NM_002191.3	208	Cgg/Tgg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789597	3789597	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	116	368	0	ENST00000262367.5:c.4262G>T	p.Cys1421Phe	p.C1421F	ENST00000262367	NM_004380.2	1421	tGc/tTc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945702	17945702	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs905946477		P-0033496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	65	695	0	ENST00000458235.1:c.2158A>T	p.Ser720Cys	p.S720C	ENST00000458235	NM_000215.3	720	Agt/Tgt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467418	25467418	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs773613277		P-0033496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	55	508	0	ENST00000264709.3:c.1658A>G	p.Asn553Ser	p.N553S	ENST00000264709	NM_175629.2	553	aAc/aGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0025601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	522	453	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	478	563	0	ENST00000269305.4:c.517G>C	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ctg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910387	29910392	+	inframe_deletion	In_Frame_Del	DEL	GACCCA	GACCCA	-			P-0025601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1359	164	678	0	ENST00000376809.5:c.61_66del	p.Gln21_Thr22del	p.Q21_T22del	ENST00000376809	NM_002116.7	19	ctGACCCAg/ctg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	25	647	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827958	40827958	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs200990749		P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	43	515	0	ENST00000373198.4:c.2470G>T	p.Asp824Tyr	p.D824Y	ENST00000373198	NM_133170.3	824	Gac/Tac																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140165	50140165	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	63	581	0	ENST00000246792.3:c.260A>T	p.Gln87Leu	p.Q87L	ENST00000246792	NM_006270.3	87	cAg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	54	573	1	ENST00000269305.4:c.994-1G>T		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81953115	81953115	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1336595726		P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	27	280	0	ENST00000359376.3:c.2081G>A	p.Arg694His	p.R694H	ENST00000359376	NM_002661.3	694	cGc/cAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18650671	18650671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	26	432	0	ENST00000266497.5:c.2882G>T	p.Gly961Val	p.G961V	ENST00000266497		961	gGa/gTa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716199	243716199	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	43	638	0	ENST00000263826.5:c.995T>C	p.Leu332Pro	p.L332P	ENST00000263826	NM_005465.4	332	cTa/cCa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112575	115112575	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	67	694	0	ENST00000257566.3:c.1165G>T	p.Ala389Ser	p.A389S	ENST00000257566	NM_016569.3	389	Gcc/Tcc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953262	81953262	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	28	294	1	ENST00000359376.3:c.2228A>T	p.Tyr743Phe	p.Y743F	ENST00000359376	NM_002661.3	743	tAc/tTc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716302	52716302	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	66	578	0	ENST00000322088.6:c.746G>C	p.Arg249Pro	p.R249P	ENST00000322088	NM_014225.5	249	cGc/cCc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714388	40714388	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	44	586	0	ENST00000373198.4:c.4009C>A	p.Arg1337Ser	p.R1337S	ENST00000373198	NM_133170.3	1337	Cgc/Agc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62294205	62294205	+	frameshift_variant,NMD_transcript_variant	Frame_Shift_Del	DEL	G	G	-			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	43	659	0	ENST00000482936.1:c.502del	p.Ala168GlnfsTer11	p.A168Qfs*11	ENST00000482936		167	gtG/gt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133836	55133836	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	34	415	0	ENST00000257290.5:c.1049T>A	p.Leu350Gln	p.L350Q	ENST00000257290	NM_006206.4	350	cTg/cAg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86681116	86681116	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	30	311	0	ENST00000274376.6:c.2759-2A>G		p.X920_splice	ENST00000274376	NM_002890.2	920																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106522603	106522603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	40	552	0	ENST00000359195.3:c.2580G>T	p.Leu860Phe	p.L860F	ENST00000359195	NM_002649.2	860	ttG/ttT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974760	21974760	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691186		P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	30	228	0	ENST00000304494.5:c.67G>T	p.Gly23Cys	p.G23C	ENST00000304494	NM_000077.4	23	Ggt/Tgt																																																																															
TEK	7010	MSKCC	GRCh37	9	27218804	27218804	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	40	577	0	ENST00000380036.4:c.3092T>C	p.Ile1031Thr	p.I1031T	ENST00000380036	NM_000459.3	1031	aTt/aCt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390997	139390997	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	58	803	1	ENST00000277541.6:c.7194G>T	p.Gln2398His	p.Q2398H	ENST00000277541	NM_017617.3	2398	caG/caT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0025663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	57	313	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	72	473	0	ENST00000269305.4:c.814G>C	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ctg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0025683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	362	565	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0025683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	42	229	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631101	69631101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150581924		P-0025683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	128	476	1	ENST00000334134.2:c.311G>A	p.Arg104Gln	p.R104Q	ENST00000334134	NM_005247.2	104	cGa/cAa																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200305	67200305	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1007508504		P-0025683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	118	433	0	ENST00000312629.5:c.613C>T	p.Gln205Ter	p.Q205*	ENST00000312629	NM_003952.2	205	Cag/Tag																																																																															
XPO1	7514	MSKCC	GRCh37	2	61711103	61711103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	70	455	0	ENST00000401558.2:c.2646C>G	p.Phe882Leu	p.F882L	ENST00000401558	NM_003400.3	882	ttC/ttG																																																																															
TP63	8626	MSKCC	GRCh37	3	189585706	189585706	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	92	448	0	ENST00000264731.3:c.967A>C	p.Ile323Leu	p.I323L	ENST00000264731	NM_003722.4	323	Atc/Ctc																																																																															
APC	324	MSKCC	GRCh37	5	112173780	112173780	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	112	328	0	ENST00000257430.4:c.2489del	p.Val830GlyfsTer12	p.V830Gfs*12	ENST00000257430	NM_000038.5	830	gTg/gg																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858443	27858443	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750959072		P-0025683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	146	343	0	ENST00000359303.2:c.128G>A	p.Arg43Lys	p.R43K	ENST00000359303	NM_003535.2	43	aGg/aAg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508508	106508508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	99	171	0	ENST00000359195.3:c.502G>A	p.Val168Met	p.V168M	ENST00000359195	NM_002649.2	168	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0025684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	457	522	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29588751	29588751	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs760703505		P-0025684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	41	362	1	ENST00000358273.4:c.4600C>T	p.Arg1534Ter	p.R1534*	ENST00000358273	NM_001042492.2	1534	Cga/Tga																																																																															
RAD52	5893	MSKCC	GRCh37	12	1023154	1023154	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs766789173		P-0025684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	77	560	0	ENST00000358495.3:c.1101G>C	p.Gln367His	p.Q367H	ENST00000358495	NM_134424.2	367	caG/caC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433005	49433005	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1208681909		P-0025684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	34	497	2	ENST00000301067.7:c.8366G>A	p.Arg2789Gln	p.R2789Q	ENST00000301067	NM_003482.3	2789	cGg/cAg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47698153	47698154	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0025684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	69	533	3	ENST00000233146.2:c.1711_1712delinsAT	p.Glu571Ile	p.E571I	ENST00000233146	NM_000251.2	571	GAa/ATa																																																																															
TOP1	7150	MSKCC	GRCh37	20	39726902	39726902	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0025684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	39	372	0	ENST00000361337.2:c.900T>A	p.Cys300Ter	p.C300*	ENST00000361337	NM_003286.2	300	tgT/tgA																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670337	30670337	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	97	462	0	ENST00000376406.3:c.6095C>G	p.Ser2032Cys	p.S2032C	ENST00000376406	NM_014641.2	2032	tCc/tGc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673400	30673400	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	358	615	1	ENST00000376406.3:c.3560C>G	p.Thr1187Ser	p.T1187S	ENST00000376406	NM_014641.2	1187	aCt/aGt																																																																															
ARAF	369	MSKCC	GRCh37	X	47429397	47429397	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	27	561	0	ENST00000377045.4:c.1525T>C	p.Tyr509His	p.Y509H	ENST00000377045	NM_001654.4	509	Tac/Cac																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	234	482	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430422	181430422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	184	677	2	ENST00000325404.1:c.274G>T	p.Asp92Tyr	p.D92Y	ENST00000325404	NM_003106.3	92	Gac/Tac																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346947	73346947	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	49	345	0	ENST00000377767.4:c.1270G>T	p.Gly424Ter	p.G424*	ENST00000377767	NM_014953.3	424	Gga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390201	89390201	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1167543166		P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	37	368	0	ENST00000336596.2:c.950C>A	p.Pro317His	p.P317H	ENST00000336596	NM_005233.5	317	cCt/cAt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894934	101894934	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	79	399	0	ENST00000374994.4:c.487G>T	p.Asp163Tyr	p.D163Y	ENST00000374994	NM_004612.2	163	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	37	527	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
SUZ12	23512	MSKCC	GRCh37	17	30264360	30264360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	21	164	0	ENST00000322652.5:c.95C>T	p.Ala32Val	p.A32V	ENST00000322652	NM_015355.2	32	gCg/gTg																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46546326	46546326	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	63	444	0	ENST00000262741.5:c.203G>T	p.Gly68Val	p.G68V	ENST00000262741	NM_003629.3	68	gGg/gTg																																																																															
FH	2271	MSKCC	GRCh37	1	241671911	241671911	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	31	470	0	ENST00000366560.3:c.730C>G	p.Leu244Val	p.L244V	ENST00000366560	NM_000143.3	244	Ctt/Gtt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941007	71941007	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1179011278		P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	59	912	1	ENST00000298229.2:c.883C>T	p.Pro295Ser	p.P295S	ENST00000298229	NM_001567.3	295	Cca/Tca																																																																															
FLT3	2322	MSKCC	GRCh37	13	28624231	28624231	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs1214984827		P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	44	472	0	ENST00000241453.7:c.742+1G>T		p.X248_splice	ENST00000241453	NM_004119.2	248																																																																																
TSHR	7253	MSKCC	GRCh37	14	81558891	81558891	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121908863		P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	134	511	0	ENST00000298171.2:c.484C>A	p.Pro162Thr	p.P162T	ENST00000298171	NM_000369.2	162	Cct/Act																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246696	41246696	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	52	498	0	ENST00000357654.3:c.852G>C	p.Gln284His	p.Q284H	ENST00000357654	NM_007294.3	284	caG/caC																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214607	5214607	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1326918817		P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	144	643	0	ENST00000357368.4:c.4459A>G	p.Ile1487Val	p.I1487V	ENST00000357368	NM_002850.3	1487	Atc/Gtc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99155386	99155386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	30	523	0	ENST00000074304.5:c.612G>T	p.Glu204Asp	p.E204D	ENST00000074304	NM_001134224.1	204	gaG/gaT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739113	40739113	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	319	556	0	ENST00000373198.4:c.3171G>C	p.Glu1057Asp	p.E1057D	ENST00000373198	NM_133170.3	1057	gaG/gaC																																																																															
EP300	2033	MSKCC	GRCh37	22	41564533	41564533	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	42	564	0	ENST00000263253.7:c.3955G>C	p.Gly1319Arg	p.G1319R	ENST00000263253	NM_001429.3	1319	Gga/Cga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713741	30713742	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	33	461	0	ENST00000359013.4:c.1146dup	p.Ile383AspfsTer7	p.I383Dfs*7	ENST00000359013	NM_001024847.2	381	cgg/cGgg																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799503	72799503	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	64	692	0	ENST00000325599.8:c.1666A>G	p.Lys556Glu	p.K556E	ENST00000325599	NM_018130.2	556	Aag/Gag																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957019	1957019	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	97	527	0	ENST00000382895.3:c.2470C>T	p.Arg824Ter	p.R824*	ENST00000382895	NM_133330.2	824	Cga/Tga																																																																															
KIT	3815	MSKCC	GRCh37	4	55564574	55564574	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	146	624	0	ENST00000288135.5:c.462G>C	p.Lys154Asn	p.K154N	ENST00000288135	NM_000222.2	154	aaG/aaC																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31451746	31451746	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	68	295	0	ENST00000344624.3:c.2576del	p.His859LeufsTer3	p.H859Lfs*3	ENST00000344624		859	cAt/ct																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876395	35876395	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	43	579	0	ENST00000303115.3:c.1187A>G	p.Asn396Ser	p.N396S	ENST00000303115	NM_002185.3	396	aAt/aGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853063	151853063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	116	437	0	ENST00000262189.6:c.11892G>T	p.Gln3964His	p.Q3964H	ENST00000262189	NM_170606.2	3964	caG/caT																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992720	68992720	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	120	652	1	ENST00000288368.4:c.1685G>T	p.Arg562Leu	p.R562L	ENST00000288368	NM_024870.2	562	cGt/cTt																																																																															
RAD21	5885	MSKCC	GRCh37	8	117868981	117868981	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	59	427	0	ENST00000297338.2:c.718G>T	p.Gly240Cys	p.G240C	ENST00000297338	NM_006265.2	240	Ggt/Tgt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742488	145742501	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCTGGCGGCTCC	GCCCTGGCGGCTCC	-			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	43	718	0	ENST00000428558.2:c.287_300del	p.Arg96LeufsTer36	p.R96Lfs*36	ENST00000428558	NM_004260.3	96	cGGAGCCGCCAGGGC/c																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486097	8486097	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	70	496	0	ENST00000356435.5:c.2720T>A	p.Met907Lys	p.M907K	ENST00000356435		907	aTg/aAg																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165806	118165806	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	96	486	0	ENST00000369448.3:c.316C>T	p.Gln106Ter	p.Q106*	ENST00000369448	NM_017709.3	106	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831980	72831980	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	148	547	0	ENST00000268489.5:c.4601C>G	p.Thr1534Ser	p.T1534S	ENST00000268489	NM_006885.3	1534	aCt/aGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845890	72845890	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	263	540	1	ENST00000268489.5:c.3577T>A	p.Ser1193Thr	p.S1193T	ENST00000268489	NM_006885.3	1193	Tcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577085	+	missense_variant	Missense_Mutation	ONP	CCTC	CCTC	TCTT			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	404	592	1	ENST00000269305.4:c.853_856delinsAAGA	p.Glu285_Glu286delinsLysLys	p.E285_E286delinsKK	ENST00000269305	NM_001126112.2	285	GAGGaa/AAGAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579437	7579437	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781307		P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	146	577	1	ENST00000269305.4:c.250G>A	p.Ala84Thr	p.A84T	ENST00000269305	NM_001126112.2	84	Gcc/Acc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16042450	16042450	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	139	554	0	ENST00000268712.3:c.1224T>A	p.Phe408Leu	p.F408L	ENST00000268712	NM_006311.3	408	ttT/ttA																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918795	50918795	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777468034		P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1326	151	565	1	ENST00000440232.2:c.2665C>T	p.Arg889Cys	p.R889C	ENST00000440232	NM_002691.3	889	Cgc/Tgc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936030	49936030	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	157	586	0	ENST00000296474.3:c.1640G>C	p.Trp547Ser	p.W547S	ENST00000296474	NM_002447.2	547	tGg/tCg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936367	49936367	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	162	588	1	ENST00000296474.3:c.1481G>T	p.Ser494Ile	p.S494I	ENST00000296474	NM_002447.2	494	aGt/aTt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940933	49940933	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1391612870		P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	166	532	0	ENST00000296474.3:c.110C>G	p.Ser37Cys	p.S37C	ENST00000296474	NM_002447.2	37	tCt/tGt																																																																															
KDR	3791	MSKCC	GRCh37	4	55981132	55981132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	132	551	0	ENST00000263923.4:c.567C>A	p.Ser189Arg	p.S189R	ENST00000263923	NM_002253.2	189	agC/agA																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31449513	31449513	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	92	313	0	ENST00000344624.3:c.2696A>C	p.His899Pro	p.H899P	ENST00000344624		899	cAt/cCt																																																																															
APC	324	MSKCC	GRCh37	5	112137040	112137040	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	142	574	0	ENST00000257430.4:c.794G>C	p.Gly265Ala	p.G265A	ENST00000257430	NM_000038.5	265	gGa/gCa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	159	576	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874689	151874689	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	209	438	0	ENST00000262189.6:c.7849A>G	p.Asn2617Asp	p.N2617D	ENST00000262189	NM_170606.2	2617	Aat/Gat																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980483	70980483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1484	158	636	1	ENST00000276594.2:c.894C>A	p.Asp298Glu	p.D298E	ENST00000276594	NM_024504.3	298	gaC/gaA																																																																															
AGO2	27161	MSKCC	GRCh37	8	141551357	141551357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1552	150	629	1	ENST00000220592.5:c.1940G>A	p.Arg647His	p.R647H	ENST00000220592	NM_012154.3	647	cGc/cAc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891228	101891228	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	125	440	0	ENST00000374994.4:c.189C>G	p.Asp63Glu	p.D63E	ENST00000374994	NM_004612.2	63	gaC/gaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0025783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	86	642	4	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	61	457	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
E2F3	1871	MSKCC	GRCh37	6	20481526	20481526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	67	365	0	ENST00000346618.3:c.595G>A	p.Asp199Asn	p.D199N	ENST00000346618	NM_001949.4	199	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0025791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	328	804	0	ENST00000269305.4:c.376T>C	p.Tyr126His	p.Y126H	ENST00000269305	NM_001126112.2	126	Tac/Cac																																																																															
TP63	8626	MSKCC	GRCh37	3	189612157	189612157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	83	572	1	ENST00000264731.3:c.1909C>T	p.Arg637Cys	p.R637C	ENST00000264731	NM_003722.4	637	Cgt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256239	16256239	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	140	642	0	ENST00000375759.3:c.3504T>G	p.Ser1168Arg	p.S1168R	ENST00000375759	NM_015001.2	1168	agT/agG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433872	49433872	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747213352		P-0025791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	114	808	0	ENST00000301067.7:c.7681G>A	p.Gly2561Arg	p.G2561R	ENST00000301067	NM_003482.3	2561	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0025824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1273	210	965	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876449	35876449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	77	637	0	ENST00000303115.3:c.1241C>A	p.Thr414Lys	p.T414K	ENST00000303115	NM_002185.3	414	aCg/aAg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937465	32937465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	96	692	1	ENST00000380152.3:c.8126G>T	p.Ser2709Ile	p.S2709I	ENST00000380152		2709	aGt/aTt																																																																															
BARD1	580	MSKCC	GRCh37	2	215632303	215632303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	128	554	1	ENST00000260947.4:c.1471G>T	p.Gly491Trp	p.G491W	ENST00000260947	NM_000465.2	491	Ggg/Tgg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707797	176707797	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	49	431	0	ENST00000439151.2:c.5854C>G	p.Arg1952Gly	p.R1952G	ENST00000439151	NM_022455.4	1952	Cgg/Ggg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117647387	117647387	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0025824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	152	754	0	ENST00000368508.3:c.5557G>T	p.Asp1853Tyr	p.D1853Y	ENST00000368508	NM_002944.2	1853	Gat/Tat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528723	8528723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	44	408	0	ENST00000356435.5:c.409G>T	p.Val137Phe	p.V137F	ENST00000356435		137	Gtt/Ttt																																																																															
ATRX	546	MSKCC	GRCh37	X	76938857	76938857	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	58	626	0	ENST00000373344.5:c.1891C>T	p.Gln631Ter	p.Q631*	ENST00000373344	NM_000489.3	631	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0025921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	47	880	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	41	620	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981535	201981536	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	65	946	0	ENST00000359651.3:c.451dup	p.Gln151ProfsTer10	p.Q151Pfs*10	ENST00000359651		150	ttc/ttCc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650325	48650325	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs184815507		P-0025921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	48	418	0	ENST00000376670.3:c.295G>A	p.Gly99Ser	p.G99S	ENST00000376670	NM_002049.3	99	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	436	639	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0025935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1129	60	863	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0025935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	287	341	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433722	49433722	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs572359740		P-0025935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1237	632	1111	4	ENST00000301067.7:c.7831C>T	p.Arg2611Cys	p.R2611C	ENST00000301067	NM_003482.3	2611	Cgc/Tgc																																																																															
BCL10	8915	MSKCC	GRCh37	1	85736555	85736555	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	98	278	0	ENST00000370580.1:c.92A>G	p.Lys31Arg	p.K31R	ENST00000370580	NM_003921.4	31	aAa/aGa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711026	114711026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	44	347	1	ENST00000543371.1:c.250G>A	p.Glu84Lys	p.E84K	ENST00000543371	NM_001198531.1	84	Gaa/Aaa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871108	12871109	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	67	294	0	ENST00000228872.4:c.337dup	p.Arg113ProfsTer12	p.R113Pfs*12	ENST00000228872	NM_004064.3	112	agc/agCc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81888106	81888106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746298243		P-0025935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	172	619	0	ENST00000359376.3:c.251G>A	p.Arg84Gln	p.R84Q	ENST00000359376	NM_002661.3	84	cGa/cAa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523329	9523329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	317	492	0	ENST00000353224.5:c.1908G>T	p.Met636Ile	p.M636I	ENST00000353224	NM_177990.2	636	atG/atT																																																																															
NF2	4771	MSKCC	GRCh37	22	30032752	30032752	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	144	392	0	ENST00000338641.4:c.127G>T	p.Gly43Trp	p.G43W	ENST00000338641	NM_000268.3	43	Ggg/Tgg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965602	93965602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	297	642	0	ENST00000369303.4:c.2326G>T	p.Asp776Tyr	p.D776Y	ENST00000369303	NM_004440.3	776	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	142	495	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	109	322	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	129	409	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206647680	206647680	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs549538401		P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	74	346	0	ENST00000367120.3:c.94G>A	p.Gly32Arg	p.G32R	ENST00000367120	NM_014002.3	32	Gga/Aga																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396528	30396528	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	19	458	0	ENST00000331968.5:c.191T>A	p.Leu64Gln	p.L64Q	ENST00000331968	NM_002742.2	64	cTg/cAg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482815	67482815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	208	468	0	ENST00000327367.4:c.1219C>T	p.Leu407Phe	p.L407F	ENST00000327367	NM_005902.3	407	Ctt/Ttt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244068	5244068	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747170106		P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	179	634	1	ENST00000357368.4:c.1414G>A	p.Val472Met	p.V472M	ENST00000357368	NM_002850.3	472	Gtg/Atg																																																																															
ALK	238	MSKCC	GRCh37	2	29419706	29419706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	55	404	0	ENST00000389048.3:c.4094G>T	p.Cys1365Phe	p.C1365F	ENST00000389048	NM_004304.4	1365	tGc/tTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468364	89468364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	61	204	0	ENST00000336596.2:c.1898G>T	p.Gly633Val	p.G633V	ENST00000336596	NM_005233.5	633	gGa/gTa																																																																															
ATR	545	MSKCC	GRCh37	3	142186834	142186834	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	19	366	0	ENST00000350721.4:c.6629A>C	p.Lys2210Thr	p.K2210T	ENST00000350721	NM_001184.3	2210	aAg/aCg																																																																															
APC	324	MSKCC	GRCh37	5	112173622	112173623	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	141	270	0	ENST00000257430.4:c.2333dup	p.Asn778LysfsTer10	p.N778Kfs*10	ENST00000257430	NM_000038.5	777	-/A																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15838412	15838412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	128	193	0	ENST00000307771.7:c.910G>A	p.Val304Met	p.V304M	ENST00000307771	NM_005089.3	304	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112173625	112173625	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	149	269	0	ENST00000257430.4:c.2334T>A	p.Asn778Lys	p.N778K	ENST00000257430	NM_000038.5	778	aaT/aaA																																																																															
RXRA	6256	MSKCC	GRCh37	9	137309018	137309018	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771883272		P-0025988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	448	840	2	ENST00000481739.1:c.625C>T	p.Arg209Trp	p.R209W	ENST00000481739	NM_002957.4	209	Cgg/Tgg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639441	3639441	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376112909		P-0025988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	233	787	1	ENST00000294008.3:c.4198G>A	p.Asp1400Asn	p.D1400N	ENST00000294008	NM_032444.2	1400	Gat/Aat																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618876	37618877	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0025988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	245	752	0	ENST00000447079.4:c.552_553del	p.Arg185GlufsTer14	p.R185Efs*14	ENST00000447079	NM_015083.1	184	acCAgg/acgg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37672049	37672049	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	191	625	0	ENST00000447079.4:c.2834T>C	p.Leu945Pro	p.L945P	ENST00000447079	NM_015083.1	945	cTa/cCa																																																																															
BCL6	604	MSKCC	GRCh37	3	187447439	187447439	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747597566		P-0025988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	283	697	2	ENST00000232014.4:c.754A>G	p.Asn252Asp	p.N252D	ENST00000232014	NM_001130845.1	252	Aat/Gat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0026033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	196	497	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0026033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	165	468	2	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0026050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	1435	748	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579585	7579585	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	187	677	0	ENST00000269305.4:c.102del	p.Leu35CysfsTer9	p.L35Cfs*9	ENST00000269305	NM_001126112.2	34	ccC/cc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5265138	5265138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	241	1043	0	ENST00000357368.4:c.449G>T	p.Arg150Leu	p.R150L	ENST00000357368	NM_002850.3	150	cGg/cTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42040903	42040903	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	157	661	1	ENST00000219905.7:c.5281C>T	p.Arg1761Ter	p.R1761*	ENST00000219905	NM_001164273.1	1761	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577137	7577137	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	82	858	0	ENST00000269305.4:c.801del	p.Asn268ThrfsTer77	p.N268Tfs*77	ENST00000269305	NM_001126112.2	267	cgG/cg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914526	32914526	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	123	823	0	ENST00000380152.3:c.6034T>C	p.Ser2012Pro	p.S2012P	ENST00000380152		2012	Tcc/Ccc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781345	3781345	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1160	146	1101	0	ENST00000262367.5:c.5020A>G	p.Lys1674Glu	p.K1674E	ENST00000262367	NM_004380.2	1674	Aag/Gag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391196	89391196	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs144998277		P-0026050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	53	489	0	ENST00000336596.2:c.1262C>A	p.Pro421Gln	p.P421Q	ENST00000336596	NM_005233.5	421	cCa/cAa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512360	149512361	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0026050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	56	739	2	ENST00000261799.4:c.1079_1080delinsAA	p.Ser360Ter	p.S360*	ENST00000261799	NM_002609.3	360	tCC/tAA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878233	151878233	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs762198582		P-0026050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	217	684	0	ENST00000262189.6:c.6712A>G	p.Met2238Val	p.M2238V	ENST00000262189	NM_170606.2	2238	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587782082		P-0026062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	789	711	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65303763	65303763	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	325	596	0	ENST00000342505.4:c.2992C>T	p.Gln998Ter	p.Q998*	ENST00000342505	NM_002227.2	998	Caa/Taa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024647	31024647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	370	651	0	ENST00000375687.4:c.4132C>T	p.Leu1378Phe	p.L1378F	ENST00000375687	NM_015338.5	1378	Ctt/Ttt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949046	151949047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	1046	592	0	ENST00000262189.6:c.1598dup	p.Glu534GlyfsTer4	p.E534Gfs*4	ENST00000262189	NM_170606.2	533	gtg/gtTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0026108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	126	454	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																															
MPL	4352	MSKCC	GRCh37	1	43817960	43817960	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752258550		P-0026108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	73	331	1	ENST00000372470.3:c.1639G>A	p.Ala547Thr	p.A547T	ENST00000372470	NM_005373.2	547	Gca/Aca																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505474	25505474	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	70	279	0	ENST00000264709.3:c.284A>G	p.Lys95Arg	p.K95R	ENST00000264709	NM_175629.2	95	aAg/aGg																																																																															
LYN	4067	MSKCC	GRCh37	8	56912094	56912094	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	57	338	0	ENST00000519728.1:c.1322A>C	p.Lys441Thr	p.K441T	ENST00000519728	NM_002350.3	441	aAa/aCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	124	274	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0026123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	150	375	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0026123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	31	81	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609902	117609902	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781588795		P-0026139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	201	494	0	ENST00000368508.3:c.6797C>T	p.Thr2266Met	p.T2266M	ENST00000368508	NM_002944.2	2266	aCg/aTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0026253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	51	244	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0026253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	205	337	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1206165503		P-0026253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	220	488	2	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255092	16255093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	71	297	0	ENST00000375759.3:c.2363dup	p.Asn788LysfsTer2	p.N788Kfs*2	ENST00000375759	NM_015001.2	786	aca/acAa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245183	46245183	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	65	266	0	ENST00000334344.6:c.3277C>G	p.Pro1093Ala	p.P1093A	ENST00000334344	NM_152641.2	1093	Cct/Gct																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151843806	151843807	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0026253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	39	210	0	ENST00000262189.6:c.13908_13909del	p.Lys4636AsnfsTer13	p.K4636Nfs*13	ENST00000262189	NM_170606.2	4636	aaGAtt/aatt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0026351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	57	302	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25457243	25457243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377577594		P-0026351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	21	281	1	ENST00000264709.3:c.2644C>T	p.Arg882Cys	p.R882C	ENST00000264709	NM_175629.2	882	Cgc/Tgc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98218623	98218623	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778629		P-0026351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	37	247	1	ENST00000331920.6:c.3241G>A	p.Val1081Met	p.V1081M	ENST00000331920	NM_000264.3	1081	Gtg/Atg																																																																															
RB1	5925	MSKCC	GRCh37	13	49030384	49030384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs554834063		P-0026351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	35	253	0	ENST00000267163.4:c.1859C>T	p.Thr620Met	p.T620M	ENST00000267163	NM_000321.2	620	aCg/aTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202136247	202136247	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	50	246	0	ENST00000358485.4:c.491T>A	p.Leu164His	p.L164H	ENST00000358485	NM_001080125.1	164	cTc/cAc																																																																															
STK40	83931	MSKCC	GRCh37	1	36820829	36820829	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777336899		P-0026351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	25	207	0	ENST00000373129.3:c.548G>A	p.Arg183His	p.R183H	ENST00000373129	NM_032017.1	183	cGc/cAc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41226539	41226539	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs80358189		P-0026351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	37	228	0	ENST00000357654.3:c.4485-1G>A		p.X1495_splice	ENST00000357654	NM_007294.3	1495																																																																																
PTEN	5728	MSKCC	GRCh37	10	89717661	89717675	+	inframe_deletion	In_Frame_Del	DEL	CAGGACCCACACGAC	CAGGACCCACACGAC	-			P-0026409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	242	754	0	ENST00000371953.3:c.686_700del	p.Ser229_Arg234delinsTrp	p.S229_R234delinsW	ENST00000371953	NM_000314.4	229	tCAGGACCCACACGACgg/tgg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0026409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	143	339	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0026409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	300	595	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952117	178952117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	318	522	0	ENST00000263967.3:c.3172A>C	p.Ile1058Leu	p.I1058L	ENST00000263967	NM_006218.2	1058	Atc/Ctc																																																																															
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137852581		P-0026409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	310	275	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0026422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	86	295	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0026422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	127	463	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5243944	5243944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	109	549	1	ENST00000357368.4:c.1538C>T	p.Ser513Leu	p.S513L	ENST00000357368	NM_002850.3	513	tCg/tTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306574	41306575	+	missense_variant	Missense_Mutation	DNP	AG	AG	CA			P-0026422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	151	646	2	ENST00000373198.4:c.1084_1085delinsTG	p.Leu362Cys	p.L362C	ENST00000373198	NM_133170.3	362	CTc/TGc																																																																															
APC	324	MSKCC	GRCh37	5	112170727	112170728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTA			P-0026422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	86	573	0	ENST00000257430.4:c.1824_1827dup	p.Asp610CysfsTer25	p.D610Cfs*25	ENST00000257430	NM_000038.5	608	gct/gcTGTAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	255	684	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	102	611	5	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916706	178916706	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	25	380	0	ENST00000263967.3:c.93A>G	p.Ile31Met	p.I31M	ENST00000263967	NM_006218.2	31	atA/atG																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	122	420	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739374	145739374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776218553		P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	153	733	3	ENST00000428558.2:c.1996G>A	p.Gly666Arg	p.G666R	ENST00000428558	NM_004260.3	666	Ggg/Agg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771827	135771827	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs118203750		P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	126	710	2	ENST00000298552.3:c.3290G>A	p.Arg1097His	p.R1097H	ENST00000298552	NM_001162426.1	1097	cGt/cAt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11181367	11181367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	117	652	0	ENST00000361445.4:c.6869C>T	p.Ala2290Val	p.A2290V	ENST00000361445	NM_004958.3	2290	gCc/gTc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798993	45798993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	183	688	0	ENST00000372115.3:c.310G>A	p.Glu104Lys	p.E104K	ENST00000372115	NM_001048171.1	104	Gaa/Aaa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120479979	120479979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	123	676	0	ENST00000256646.2:c.3448C>T	p.Leu1150Phe	p.L1150F	ENST00000256646	NM_024408.3	1150	Ctc/Ttc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041927	14041927	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765253522		P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	74	320	1	ENST00000311895.7:c.2474C>T	p.Ala825Val	p.A825V	ENST00000311895	NM_005236.2	825	gCg/gTg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7983221	7983221	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	105	598	0	ENST00000319144.4:c.793G>C	p.Gly265Arg	p.G265R	ENST00000319144	NM_001139.2	265	Ggg/Cgg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619253	37619253	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs964263389		P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1999	188	382	0	ENST00000447079.4:c.929C>T	p.Ser310Leu	p.S310L	ENST00000447079	NM_015083.1	310	tCg/tTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222272	2222272	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	297	785	0	ENST00000398665.3:c.3104C>G	p.Ser1035Ter	p.S1035*	ENST00000398665	NM_032482.2	1035	tCa/tGa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11094975	11094975	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	125	746	0	ENST00000344626.4:c.148C>G	p.Pro50Ala	p.P50A	ENST00000344626	NM_003072.3	50	Ccc/Gcc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170431	11170431	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	177	545	0	ENST00000344626.4:c.4638C>G	p.Ile1546Met	p.I1546M	ENST00000344626	NM_003072.3	1546	atC/atG																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266796	18266796	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768075445		P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	86	619	0	ENST00000222254.8:c.107C>T	p.Ala36Val	p.A36V	ENST00000222254	NM_005027.3	36	gCg/gTg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39294835	39294835	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	34	471	0	ENST00000402219.2:c.147A>C	p.Glu49Asp	p.E49D	ENST00000402219	NM_005633.3	49	gaA/gaC																																																																															
SOS1	6654	MSKCC	GRCh37	2	39294861	39294861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	26	477	1	ENST00000402219.2:c.121A>G	p.Asn41Asp	p.N41D	ENST00000402219	NM_005633.3	41	Aat/Gat																																																																															
SOS1	6654	MSKCC	GRCh37	2	39294866	39294871	+	frameshift_variant	Frame_Shift_Del	DEL	TCGAGA	TCGAGA	ACGAG			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	27	471	2	ENST00000402219.2:c.111_116delinsCTCGT	p.Leu38SerfsTer14	p.L38Sfs*14	ENST00000402219	NM_005633.3	37	acTCTCGAg/acCTCGTg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46268749	46268749	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1410071299		P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	199	638	0	ENST00000371998.3:c.3034G>A	p.Asp1012Asn	p.D1012N	ENST00000371998		1012	Gat/Aat																																																																															
MLH1	4292	MSKCC	GRCh37	3	37091976	37091976	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	142	351	0	ENST00000231790.2:c.2104-1G>A		p.X702_splice	ENST00000231790	NM_000249.3	702																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178916948	178916948	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	40	356	0	ENST00000263967.3:c.335T>C	p.Ile112Thr	p.I112T	ENST00000263967	NM_006218.2	112	aTc/aCc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180040054	180040054	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	169	804	2	ENST00000261937.6:c.3388G>T	p.Asp1130Tyr	p.D1130Y	ENST00000261937	NM_182925.4	1130	Gac/Tac																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056551	26056551	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1393266086		P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	34	222	0	ENST00000343677.2:c.106T>C	p.Ser36Pro	p.S36P	ENST00000343677	NM_005319.3	36	Tct/Cct																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864407	162864407	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	107	592	4	ENST00000366898.1:c.106del	p.Val36PhefsTer8	p.V36Ffs*8	ENST00000366898	NM_004562.2	36	Gtt/tt																																																																															
ATM	472	MSKCC	GRCh37	11	108213949	108213949	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs761625350		P-0026500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	113	281	0	ENST00000278616.4:c.8269G>A	p.Val2757Met	p.V2757M	ENST00000278616	NM_000051.3	2757	Gtg/Atg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0026652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	583	580	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
ATR	545	MSKCC	GRCh37	3	142286917	142286917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	490	433	0	ENST00000350721.4:c.139G>A	p.Asp47Asn	p.D47N	ENST00000350721	NM_001184.3	47	Gat/Aat																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs121913396		P-0026673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	115	224	0	ENST00000349496.5:c.95A>C	p.Asp32Ala	p.D32A	ENST00000349496	NM_001904.3	32	gAc/gCc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519325	176519325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	195	333	1	ENST00000292408.4:c.731G>A	p.Arg244Gln	p.R244Q	ENST00000292408	NM_213647.1	244	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	12	395	1	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																															
RHOA	387	MSKCC	GRCh37	3	49405954	49405954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	300	618	0	ENST00000418115.1:c.184G>A	p.Gly62Arg	p.G62R	ENST00000418115	NM_001664.2	62	Ggg/Agg																																																																															
CBFB	865	MSKCC	GRCh37	16	67070608	67070608	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	90	225	0	ENST00000412916.2:c.232C>T	p.Arg78Ter	p.R78*	ENST00000412916		78	Cga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115806	8115809	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	-			P-0026763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	170	575	0	ENST00000346208.3:c.1153_1156del	p.Phe385ProfsTer18	p.F385Pfs*18	ENST00000346208		384	gaCTTC/ga																																																																															
CDH1	999	MSKCC	GRCh37	16	68844202	68844202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	191	629	0	ENST00000261769.5:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000261769	NM_004360.3	264	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	156	524	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RB1	5925	MSKCC	GRCh37	13	48947603	48947603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	44	418	0	ENST00000267163.4:c.1190C>T	p.Ser397Leu	p.S397L	ENST00000267163	NM_000321.2	397	tCa/tTa																																																																															
EED	8726	MSKCC	GRCh37	11	85961354	85961354	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1420554958		P-0026831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	54	316	0	ENST00000263360.6:c.131T>C	p.Ile44Thr	p.I44T	ENST00000263360	NM_003797.3	44	aTa/aCa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226080	2226080	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1397292006		P-0026831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	46	665	2	ENST00000326181.6:c.1777C>T	p.Arg593Trp	p.R593W	ENST00000326181	NM_032271.2	593	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577139	7577145	+	frameshift_variant	Frame_Shift_Del	DEL	GTCCCAG	GTCCCAG	-			P-0026831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	98	589	0	ENST00000269305.4:c.793_799del	p.Leu265GlyfsTer78	p.L265Gfs*78	ENST00000269305	NM_001126112.2	265	CTGGGACgg/gg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152055686	152055686	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748418114		P-0026831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	53	570	0	ENST00000262189.6:c.236C>T	p.Thr79Met	p.T79M	ENST00000262189	NM_170606.2	79	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0026847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	383	423	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579315	7579316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1267047192		P-0026847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	266	491	0	ENST00000269305.4:c.371dup	p.Cys124TrpfsTer25	p.C124Wfs*25	ENST00000269305	NM_001126112.2	124	tgc/tgGc																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0026847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	131	237	1	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591246	67591246	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0026847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	176	420	0	ENST00000274335.5:c.1746-2A>T		p.X582_splice	ENST00000274335		582																																																																																
TGFBR1	7046	MSKCC	GRCh37	9	101891188	101891188	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	164	365	0	ENST00000374994.4:c.149C>G	p.Thr50Arg	p.T50R	ENST00000374994	NM_004612.2	50	aCa/aGa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63553923	63553923	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0026847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	203	367	0	ENST00000307078.5:c.815+1G>T		p.X272_splice	ENST00000307078	NM_004655.3	272																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5222876	5222876	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs986697718		P-0026847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	93	487	0	ENST00000357368.4:c.2927G>T	p.Gly976Val	p.G976V	ENST00000357368	NM_002850.3	976	gGc/gTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56176621	56176621	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	208	350	0	ENST00000399503.3:c.2171T>C	p.Leu724Pro	p.L724P	ENST00000399503	NM_005921.1	724	cTa/cCa																																																																															
FH	2271	MSKCC	GRCh37	1	241669450	241669450	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1131691239		P-0027011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	108	273	1	ENST00000366560.3:c.757C>T	p.Gln253Ter	p.Q253*	ENST00000366560	NM_000143.3	253	Caa/Taa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871837	12871837	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	118	342	0	ENST00000228872.4:c.554A>T	p.Glu185Val	p.E185V	ENST00000228872	NM_004064.3	185	gAg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445961	49445961	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1449395575		P-0027011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	192	616	1	ENST00000301067.7:c.1505C>T	p.Pro502Leu	p.P502L	ENST00000301067	NM_003482.3	502	cCt/cTt																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281214	49281214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	188	533	1	ENST00000282018.3:c.261C>A	p.Phe87Leu	p.F87L	ENST00000282018	NM_020377.2	87	ttC/ttA																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346978	89346978	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	114	324	0	ENST00000301030.4:c.5972C>A	p.Pro1991Gln	p.P1991Q	ENST00000301030	NM_001256183.1	1991	cCa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0027011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	321	476	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881370	37881370	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	151	608	0	ENST00000269571.5:c.2562G>C	p.Lys854Asn	p.K854N	ENST00000269571		854	aaG/aaC																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40459460	40459460	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	161	531	0	ENST00000345506.4:c.1721T>G	p.Phe574Cys	p.F574C	ENST00000345506	NM_003152.3	574	tTt/tGt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602757	10602757	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	367	604	0	ENST00000171111.5:c.821A>G	p.His274Arg	p.H274R	ENST00000171111	NM_203500.1	274	cAc/cGc																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731679	47731679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	81	343	0	ENST00000449228.1:c.113G>A	p.Arg38His	p.R38H	ENST00000449228	NM_001127240.2	38	cGc/cAc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39234297	39234297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	135	402	0	ENST00000402219.2:c.2548G>A	p.Ala850Thr	p.A850T	ENST00000402219	NM_005633.3	850	Gct/Act																																																																															
REL	5966	MSKCC	GRCh37	2	61149077	61149077	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	136	410	1	ENST00000295025.8:c.1267G>T	p.Gly423Cys	p.G423C	ENST00000295025	NM_002908.2	423	Ggc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0027011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	115	445	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043408	180043408	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778806900		P-0027011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	331	585	0	ENST00000261937.6:c.3178C>T	p.Arg1060Trp	p.R1060W	ENST00000261937	NM_182925.4	1060	Cgg/Tgg																																																																															
CDK6	1021	MSKCC	GRCh37	7	92244481	92244481	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	81	269	0	ENST00000265734.4:c.954G>C	p.Gln318His	p.Q318H	ENST00000265734	NM_001259.6	318	caG/caC																																																																															
NBN	4683	MSKCC	GRCh37	8	90955492	90955492	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	24	358	0	ENST00000265433.3:c.2173C>T	p.Gln725Ter	p.Q725*	ENST00000265433	NM_002485.4	725	Cag/Tag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500833	8500833	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0027011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	123	391	0	ENST00000356435.5:c.2049C>G	p.Tyr683Ter	p.Y683*	ENST00000356435		683	taC/taG																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139820290	139820290	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1265393184		P-0027011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	175	538	0	ENST00000247668.2:c.1443G>T	p.Lys481Asn	p.K481N	ENST00000247668	NM_021138.3	481	aaG/aaT																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692937	89692937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	94	453	0	ENST00000371953.3:c.421C>T	p.His141Tyr	p.H141Y	ENST00000371953	NM_000314.4	141	Cat/Tat																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692940	89692941	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0027011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	99	439	0	ENST00000371953.3:c.424_425del	p.Arg142GlyfsTer37	p.R142Gfs*37	ENST00000371953	NM_000314.4	142	CGg/g																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	274	525	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683680	162683680	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373593750		P-0027079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	61	440	2	ENST00000366898.1:c.289C>T	p.Arg97Trp	p.R97W	ENST00000366898	NM_004562.2	97	Cgg/Tgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925700	114925700	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1003928208		P-0027079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	54	511	0	ENST00000543371.1:c.1778C>T	p.Pro593Leu	p.P593L	ENST00000543371	NM_001198531.1	593	cCg/cTg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120812	94120812	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200883289		P-0027079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	54	402	0	ENST00000369303.4:c.239A>G	p.Asn80Ser	p.N80S	ENST00000369303	NM_004440.3	80	aAc/aGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151947980	151947981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	267	452	0	ENST00000262189.6:c.1692dup	p.Asp565ArgfsTer21	p.D565Rfs*21	ENST00000262189	NM_170606.2	564	-/A																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395158	139395158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	99	743	1	ENST00000277541.6:c.5780C>T	p.Thr1927Met	p.T1927M	ENST00000277541	NM_017617.3	1927	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0027081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	392	523	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110028	115110028	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200821102		P-0027081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	105	737	3	ENST00000257566.3:c.1850C>T	p.Ala617Val	p.A617V	ENST00000257566	NM_016569.3	617	gCg/gTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259187	16259187	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	81	494	0	ENST00000375759.3:c.6452A>C	p.Glu2151Ala	p.E2151A	ENST00000375759	NM_015001.2	2151	gAa/gCa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16265833	16265834	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-	rs972442854		P-0027081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	221	561	0	ENST00000375759.3:c.10909_10910del	p.His3638ProfsTer7	p.H3638Pfs*7	ENST00000375759	NM_015001.2	3636	GAg/g																																																																															
TET1	80312	MSKCC	GRCh37	10	70405514	70405515	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	92	456	0	ENST00000373644.4:c.3029dup	p.Asn1011LysfsTer6	p.N1011Kfs*6	ENST00000373644	NM_030625.2	1010	tca/tCca																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43749601	43749756	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCGGACATGTTAGGGGGTGTTGCATGGTGATTTTTTTTCTCTCTCTCTGCTGATGCTCTAGCTTAGATGTCTTTCCTTTTGCCTTTTTGCAGTCCCTGTGGGCCTTGCTCAGAGCGGAGAAAGCATTTGTTTGTACAAGATCCGCAGACGTGTAAA	GCGGACATGTTAGGGGGTGTTGCATGGTGATTTTTTTTCTCTCTCTCTGCTGATGCTCTAGCTTAGATGTCTTTCCTTTTGCCTTTTTGCAGTCCCTGTGGGCCTTGCTCAGAGCGGAGAAAGCATTTGTTTGTACAAGATCCGCAGACGTGTAAA	-			P-0027081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	45	66	0	ENST00000523873.1:c.546-92_609del		p.X182_splice	ENST00000523873		182																																																																																
TP53	7157	MSKCC	GRCh37	17	7577520	7577521	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	145	603	0	ENST00000269305.4:c.760_761insG	p.Ile254SerfsTer10	p.I254Sfs*10	ENST00000269305	NM_001126112.2	254	atc/aGtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579590	7579590	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0027082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	98	467	2	ENST00000269305.4:c.97del	p.Ser33ProfsTer11	p.S33Pfs*11	ENST00000269305	NM_001126112.2	33	Tcc/cc																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945618	54945618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	31	322	0	ENST00000312783.6:c.952C>A	p.Leu318Ile	p.L318I	ENST00000312783	NM_198436.1	318	Ctt/Att																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174416	11174416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	157	563	0	ENST00000361445.4:c.7259C>T	p.Ala2420Val	p.A2420V	ENST00000361445	NM_004958.3	2420	gCc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49418376	49418376	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	38	360	0	ENST00000301067.7:c.16037T>G	p.Leu5346Arg	p.L5346R	ENST00000301067	NM_003482.3	5346	cTc/cGc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680655	88680655	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142726068		P-0027086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	65	434	1	ENST00000360948.2:c.602G>A	p.Arg201His	p.R201H	ENST00000360948	NM_001012338.2	201	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934571		P-0027086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	218	543	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46281279	46281279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	56	258	0	ENST00000371998.3:c.4076C>T	p.Ser1359Phe	p.S1359F	ENST00000371998		1359	tCc/tTc																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84390204	84390204	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201698934		P-0027086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	77	369	0	ENST00000321945.7:c.577C>T	p.Arg193Ter	p.R193*	ENST00000321945	NM_139076.2	193	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	90	379	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112174973	112174973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	116	211	1	ENST00000257430.4:c.3682C>T	p.Gln1228Ter	p.Q1228*	ENST00000257430	NM_000038.5	1228	Cag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911538	32911538	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs748508287		P-0027098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	83	294	0	ENST00000380152.3:c.3046G>T	p.Glu1016Ter	p.E1016*	ENST00000380152		1016	Gaa/Taa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348077	348077	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	420	605	0	ENST00000262320.3:c.1429C>G	p.Arg477Gly	p.R477G	ENST00000262320	NM_003502.3	477	Cgt/Ggt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576860	7576873	+	frameshift_variant	Frame_Shift_Del	DEL	GTGAAATATTCTCC	GTGAAATATTCTCC	-			P-0027098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	110	479	0	ENST00000269305.4:c.973_986del	p.Gly325ProfsTer7	p.G325Pfs*7	ENST00000269305	NM_001126112.2	325	GGAGAATATTTCACc/c																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711873	89711873	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs587781784		P-0027193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	66	305	2	ENST00000371953.3:c.493-2A>G		p.X165_splice	ENST00000371953	NM_000314.4	165																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37863257	37863261	+	frameshift_variant	Frame_Shift_Del	DEL	GACAT	GACAT	-			P-0027193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	213	533	5	ENST00000269571.5:c.90_94del	p.Asp30GlufsTer78	p.D30Efs*78	ENST00000269571		30	GACATg/g																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438288	56438289	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0027193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	104	556	8	ENST00000407977.2:c.704_705del	p.Arg235AsnfsTer23	p.R235Nfs*23	ENST00000407977		235	aGA/a																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944503	40944503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	79	542	1	ENST00000373198.4:c.1999G>A	p.Glu667Lys	p.E667K	ENST00000373198	NM_133170.3	667	Gag/Aag																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271910	18271910	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	95	565	0	ENST00000222254.8:c.513del	p.Asp172ThrfsTer15	p.D172Tfs*15	ENST00000222254	NM_005027.3	171	gcT/gc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0027226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	36	484	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750439	57750439	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	92	457	0	ENST00000274289.3:c.2029C>G	p.Leu677Val	p.L677V	ENST00000274289	NM_006622.3	677	Ctg/Gtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240681	55240681	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	157	680	0	ENST00000275493.2:c.1925A>C	p.Lys642Thr	p.K642T	ENST00000275493	NM_005228.3	642	aAg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0027245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	134	659	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0027245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	25	540	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0027245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	38	776	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690806	89690806	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	98	399	0	ENST00000371953.3:c.213T>G	p.Cys71Trp	p.C71W	ENST00000371953	NM_000314.4	71	tgT/tgG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0027251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	419	615	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0027251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	195	514	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
EED	8726	MSKCC	GRCh37	11	85963188	85963188	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0027251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	92	292	0	ENST00000263360.6:c.268-2A>G		p.X90_splice	ENST00000263360	NM_003797.3	90																																																																																
JUN	3725	MSKCC	GRCh37	1	59248633	59248634	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0027293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	193	913	0	ENST00000371222.2:c.109_110del	p.Ser37HisfsTer69	p.S37Hfs*69	ENST00000371222	NM_002228.3	37	AGc/c																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435201	18435202	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	58	316	0	ENST00000266497.5:c.192dup	p.Val65CysfsTer16	p.V65Cfs*16	ENST00000266497		62	-/T																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0027293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	489	876	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134920495	134920495	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	116	670	0	ENST00000398015.3:c.2310G>T	p.Gln770His	p.Q770H	ENST00000398015	NM_004441.4	770	caG/caT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509850	187509850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	155	301	0	ENST00000441802.2:c.13663G>A	p.Val4555Met	p.V4555M	ENST00000441802	NM_005245.3	4555	Gtg/Atg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	88	305	0	ENST00000263967.3:c.278G>T	p.Arg93Leu	p.R93L	ENST00000263967	NM_006218.2	93	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs942158624		P-0027307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	58	386	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148507443	148507443	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	43	310	0	ENST00000320356.2:c.2011C>G	p.Leu671Val	p.L671V	ENST00000320356	NM_004456.4	671	Ctg/Gtg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582990	95582990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	30	151	0	ENST00000343455.3:c.1552G>A	p.Ala518Thr	p.A518T	ENST00000343455	NM_177438.2	518	Gca/Aca																																																																															
BLM	641	MSKCC	GRCh37	15	91304069	91304069	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	47	361	0	ENST00000355112.3:c.1467del	p.Arg489SerfsTer13	p.R489Sfs*13	ENST00000355112	NM_000057.2	489	aGg/ag																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855832	45855832	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs761085729		P-0027307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	94	521	0	ENST00000391945.4:c.1978G>T	p.Ala660Ser	p.A660S	ENST00000391945	NM_000400.3	660	Gcg/Tcg																																																																															
CASP8	841	MSKCC	GRCh37	2	202141680	202141680	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	31	190	0	ENST00000358485.4:c.968A>T	p.His323Leu	p.H323L	ENST00000358485	NM_001080125.1	323	cAc/cTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790179	40790179	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs762081981		P-0027307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	25	251	0	ENST00000373198.4:c.2552A>T	p.Asp851Val	p.D851V	ENST00000373198	NM_133170.3	851	gAt/gTt																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24135779	24135779	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	45	295	0	ENST00000263121.7:c.266C>G	p.Thr89Ser	p.T89S	ENST00000263121	NM_003073.3	89	aCc/aGc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968096	68968096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	74	273	0	ENST00000288368.4:c.1125G>C	p.Trp375Cys	p.W375C	ENST00000288368	NM_024870.2	375	tgG/tgC																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045134	47045134	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	85	208	0	ENST00000329236.7:c.2141G>T	p.Arg714Leu	p.R714L	ENST00000329236	NM_001204466.1	714	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	101	481	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0027311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	126	679	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121912580		P-0027311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	53	321	0	ENST00000342988.3:c.1157G>T	p.Gly386Val	p.G386V	ENST00000342988	NM_005359.5	386	gGt/gTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48937040	48937046	+	frameshift_variant	Frame_Shift_Del	DEL	GATACAA	GATACAA	-			P-0027350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	186	478	0	ENST00000267163.4:c.810_816del	p.Asp270GlufsTer14	p.D270Efs*14	ENST00000267163	NM_000321.2	270	GATACAAga/ga																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396664	396664	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	274	555	0	ENST00000262320.3:c.362G>T	p.Cys121Phe	p.C121F	ENST00000262320	NM_003502.3	121	tGc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577142	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TA			P-0027350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	301	644	2	ENST00000269305.4:c.796_797delinsTA	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	GGa/TAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0027353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	192	707	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0027353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	94	886	4	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55210075	55210075	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	206	623	0	ENST00000275493.2:c.185T>G	p.Leu62Arg	p.L62R	ENST00000275493	NM_005228.3	62	cTt/cGt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47705596	47705596	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	97	419	0	ENST00000233146.2:c.2396A>G	p.Asn799Ser	p.N799S	ENST00000233146	NM_000251.2	799	aAt/aGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0027411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	341	585	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587780070		P-0027411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	129	587	0	ENST00000269305.4:c.535C>A	p.His179Asn	p.H179N	ENST00000269305	NM_001126112.2	179	Cat/Aat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974697	21974699	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0027411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	84	449	0	ENST00000304494.5:c.128_130del	p.Ser43_Tyr44delinsAsn	p.S43_Y44delinsN	ENST00000304494	NM_000077.4	43	aGTTac/aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	369	885	5	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0027454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	87	354	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038935	12038935	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	122	436	0	ENST00000396373.4:c.1228G>T	p.Glu410Ter	p.E410*	ENST00000396373	NM_001987.4	410	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0027627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	96	710	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0027627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	77	633	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27022898	27022950	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCGCAGGTCGCCCCCGCCGCCGCCAGCAGCCTGGGCAACCCGCCGCCGCC	GCCGCGCAGGTCGCCCCCGCCGCCGCCAGCAGCCTGGGCAACCCGCCGCCGCC	-			P-0027627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	16	73	0	ENST00000324856.7:c.9_61del	p.Gln4LeufsTer89	p.Q4Lfs*89	ENST00000324856	NM_006015.4	2	GCCGCGCAGGTCGCCCCCGCCGCCGCCAGCAGCCTGGGCAACCCGCCGCCGCCg/g																																																																															
REL	5966	MSKCC	GRCh37	2	61147181	61147182	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A	rs778615617		P-0027627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	69	477	0	ENST00000295025.8:c.860dup	p.Tyr287Ter	p.Y287*	ENST00000295025	NM_002908.2	287	tac/tAac																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965936	25965936	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	85	549	0	ENST00000435504.4:c.3270del	p.Phe1090LeufsTer37	p.F1090Lfs*37	ENST00000435504		1090	ttC/tt																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs113954997		P-0027657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	90	509	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073647	8073647	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	58	395	0	ENST00000377482.5:c.1012C>G	p.Leu338Val	p.L338V	ENST00000377482	NM_018948.3	338	Ctt/Gtt																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551366	150551366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	121	672	0	ENST00000369026.2:c.641G>C	p.Arg214Pro	p.R214P	ENST00000369026	NM_021960.4	214	cGa/cCa																																																																															
ATM	472	MSKCC	GRCh37	11	108235861	108235861	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	60	406	0	ENST00000278616.4:c.8903T>G	p.Leu2968Trp	p.L2968W	ENST00000278616	NM_000051.3	2968	tTg/tGg																																																																															
RB1	5925	MSKCC	GRCh37	13	48954319	48954319	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	108	351	0	ENST00000267163.4:c.1440C>A	p.Asn480Lys	p.N480K	ENST00000267163	NM_000321.2	480	aaC/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	190	598	0	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa																																																																															
BARD1	580	MSKCC	GRCh37	2	215632241	215632241	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs371785856		P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	55	367	0	ENST00000260947.4:c.1533G>T	p.Lys511Asn	p.K511N	ENST00000260947	NM_000465.2	511	aaG/aaT																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62319334	62319334	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	A	A	C			P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1352	80	573	0	ENST00000482936.1:c.1526A>C	p.His509Pro	p.H509P	ENST00000482936		509	cAc/cCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	82	405	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112090669	112090669	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	52	401	0	ENST00000257430.4:c.82G>T	p.Glu28Ter	p.E28*	ENST00000257430	NM_000038.5	28	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112173783	112173783	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	60	319	0	ENST00000257430.4:c.2492T>A	p.Leu831Ter	p.L831*	ENST00000257430	NM_000038.5	831	tTa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	56	308	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450405	50450405	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1271463285		P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	103	354	0	ENST00000331340.3:c.589G>A	p.Val197Ile	p.V197I	ENST00000331340	NM_006060.4	197	Gtt/Att																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884798	151884798	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	55	309	0	ENST00000262189.6:c.4793+2T>A		p.X1598_splice	ENST00000262189	NM_170606.2	1598																																																																																
JAK2	3717	MSKCC	GRCh37	9	5050744	5050744	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	153	451	0	ENST00000381652.3:c.527A>T	p.Glu176Val	p.E176V	ENST00000381652	NM_004972.3	176	gAa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	214	511	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499520	89499520	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	49	235	0	ENST00000336596.2:c.2690G>T	p.Arg897Met	p.R897M	ENST00000336596	NM_005233.5	897	aGg/aTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133226046	133226046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	102	474	0	ENST00000320574.5:c.3851G>T	p.Arg1284Leu	p.R1284L	ENST00000320574	NM_006231.2	1284	cGg/cTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023916	27023916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs974979838		P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	27	59	1	ENST00000324856.7:c.1022C>T	p.Ala341Val	p.A341V	ENST00000324856	NM_006015.4	341	gCg/gTg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935320	36935321	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	175	411	0	ENST00000361632.4:c.1406dup	p.Ser469ArgfsTer5	p.S469Rfs*5	ENST00000361632		469	agc/agGc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724481	162724481	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	164	376	0	ENST00000367921.3:c.253G>T	p.Glu85Ter	p.E85*	ENST00000367921	NM_006182.2	85	Gag/Tag																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724337	112724337	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	175	471	1	ENST00000369452.4:c.221G>T	p.Arg74Leu	p.R74L	ENST00000369452	NM_007373.3	74	cGg/cTg																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588865	69588865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	290	397	0	ENST00000168712.1:c.371G>A	p.Gly124Asp	p.G124D	ENST00000168712	NM_002007.2	124	gGc/gAc																																																																															
ATM	472	MSKCC	GRCh37	11	108188146	108188146	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	179	309	0	ENST00000278616.4:c.6245A>T	p.Lys2082Ile	p.K2082I	ENST00000278616	NM_000051.3	2082	aAa/aTa																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68878140	68878140	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	77	223	0	ENST00000487270.1:c.854-1G>T		p.X285_splice	ENST00000487270	NM_133509.3	285																																																																																
SRC	6714	MSKCC	GRCh37	20	36026167	36026168	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	416	514	1	ENST00000358208.4:c.769_770delinsTT	p.Gly257Phe	p.G257F	ENST00000358208		257	GGc/TTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739104	40739104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	265	365	0	ENST00000373198.4:c.3180G>T	p.Glu1060Asp	p.E1060D	ENST00000373198	NM_133170.3	1060	gaG/gaT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944539	40944539	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	72	368	0	ENST00000373198.4:c.1963G>T	p.Ala655Ser	p.A655S	ENST00000373198	NM_133170.3	655	Gcc/Tcc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448571	89448571	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	121	388	0	ENST00000336596.2:c.1535G>T	p.Arg512Leu	p.R512L	ENST00000336596	NM_005233.5	512	cGa/cTa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920418	134920418	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	121	408	0	ENST00000398015.3:c.2233C>G	p.Leu745Val	p.L745V	ENST00000398015	NM_004441.4	745	Ctg/Gtg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138400848	138400848	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	58	390	0	ENST00000289153.2:c.2465T>A	p.Leu822Ter	p.L822*	ENST00000289153	NM_006219.2	822	tTg/tAg																																																																															
TP63	8626	MSKCC	GRCh37	3	189612122	189612122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	151	406	0	ENST00000264731.3:c.1874C>T	p.Thr625Ile	p.T625I	ENST00000264731	NM_003722.4	625	aCa/aTa																																																																															
SDHA	6389	MSKCC	GRCh37	5	225612	225612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	80	220	0	ENST00000264932.6:c.391G>T	p.Asp131Tyr	p.D131Y	ENST00000264932	NM_004168.2	131	Gac/Tac																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513239	149513239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	87	464	0	ENST00000261799.4:c.844G>T	p.Glu282Ter	p.E282*	ENST00000261799	NM_002609.3	282	Gag/Tag																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515139	149515139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776224834		P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	209	388	0	ENST00000261799.4:c.343C>T	p.Arg115Trp	p.R115W	ENST00000261799	NM_002609.3	115	Cgg/Tgg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710528	117710528	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	58	153	0	ENST00000368508.3:c.1744C>G	p.Leu582Val	p.L582V	ENST00000368508	NM_002944.2	582	Ctt/Gtt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38315002	38315002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	117	441	0	ENST00000425967.3:c.62G>T	p.Cys21Phe	p.C21F	ENST00000425967	NM_001174067.1	21	tGt/tTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0027759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	116	445	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0027759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	318	580	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120674	115120675	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TAA			P-0027759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	377	783	0	ENST00000257566.3:c.331_332insTTA	p.Glu111delinsValLys	p.E111delinsVK	ENST00000257566	NM_016569.3	111	gaa/gTTAaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0027811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	47	586	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0027811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	382	554	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0027811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	109	488	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
RARA	5914	MSKCC	GRCh37	17	38508266	38508266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	103	543	2	ENST00000254066.5:c.574C>T	p.Arg192Cys	p.R192C	ENST00000254066	NM_000964.3	192	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577571	7577571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	224	687	0	ENST00000269305.4:c.710del	p.Met237SerfsTer10	p.M237Sfs*10	ENST00000269305	NM_001126112.2	237	aTg/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579383	7579383	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	168	743	0	ENST00000269305.4:c.304A>G	p.Thr102Ala	p.T102A	ENST00000269305	NM_001126112.2	102	Acc/Gcc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164348	47164348	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1317109866		P-0027823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	187	395	0	ENST00000409792.3:c.1778C>G	p.Pro593Arg	p.P593R	ENST00000409792	NM_014159.6	593	cCt/cGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	288	610	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151946975	151946978	+	frameshift_variant	Frame_Shift_Del	DEL	CTAT	CTAT	-			P-0027879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	208	534	0	ENST00000262189.6:c.1796_1799del	p.Asp599ValfsTer12	p.D599Vfs*12	ENST00000262189	NM_170606.2	599	gATAGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0027944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	225	612	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
FYN	2534	MSKCC	GRCh37	6	112017552	112017552	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373817482		P-0027944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	56	507	1	ENST00000368678.4:c.961G>A	p.Asp321Asn	p.D321N	ENST00000368678		321	Gac/Aac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971142	21971142	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	69	442	1	ENST00000304494.5:c.216C>A	p.Cys72Ter	p.C72*	ENST00000304494	NM_000077.4	72	tgC/tgA																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176085770	176085770	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	127	492	1	ENST00000367669.3:c.1016G>A	p.Gly339Asp	p.G339D	ENST00000367669	NM_022457.5	339	gGc/gAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18719971	18719971	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	106	481	0	ENST00000266497.5:c.3868G>C	p.Val1290Leu	p.V1290L	ENST00000266497		1290	Gta/Cta																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9928076	9928076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	72	417	0	ENST00000330684.3:c.1663G>T	p.Ala555Ser	p.A555S	ENST00000330684	NM_001134407.1	555	Gcc/Tcc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993684	72993684	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	68	532	2	ENST00000268489.5:c.361del	p.Asp121ThrfsTer27	p.D121Tfs*27	ENST00000268489	NM_006885.3	121	Gac/ac																																																																															
NF1	4763	MSKCC	GRCh37	17	29541547	29541547	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	53	659	0	ENST00000358273.4:c.1471T>C	p.Tyr491His	p.Y491H	ENST00000358273	NM_001042492.2	491	Tat/Cat																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73775209	73775209	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	129	568	0	ENST00000254810.4:c.47C>A	p.Ala16Asp	p.A16D	ENST00000254810	NM_005324.3	16	gCc/gAc																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17389834	17389834	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	66	823	0	ENST00000359435.4:c.967A>T	p.Ile323Phe	p.I323F	ENST00000359435	NM_001033549.1	323	Att/Ttt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523701	176523701	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	60	687	2	ENST00000292408.4:c.2112G>T	p.Glu704Asp	p.E704D	ENST00000292408	NM_213647.1	704	gaG/gaT																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225783	26225783	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	120	418	0	ENST00000360408.1:c.401A>T	p.Glu134Val	p.E134V	ENST00000360408	NM_003532.2	134	gAg/gTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81346570	81346571	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0027944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	39	375	1	ENST00000222390.5:c.1382_1383delinsAT	p.Trp461Tyr	p.W461Y	ENST00000222390	NM_000601.4	461	tGG/tAT																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87636251	87636251	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	136	522	0	ENST00000277120.3:c.2416T>A	p.Trp806Arg	p.W806R	ENST00000277120		806	Tgg/Agg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028816	47028816	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	152	759	0	ENST00000329236.7:c.120C>A	p.Asp40Glu	p.D40E	ENST00000329236	NM_001204466.1	40	gaC/gaA																																																																															
AR	367	MSKCC	GRCh37	X	66765686	66765686	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	86	934	1	ENST00000374690.3:c.698C>A	p.Ser233Tyr	p.S233Y	ENST00000374690	NM_000044.3	233	tCt/tAt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123210181	123210181	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0027944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	134	549	0	ENST00000218089.9:c.2534-1G>A		p.X845_splice	ENST00000218089	NM_001042749.1	845																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49425208	49425209	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	G			P-0027944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	498	862	0	ENST00000301067.7:c.13279_13280delinsC	p.Gly4427GlnfsTer5	p.G4427Qfs*5	ENST00000301067	NM_003482.3	4427	GGa/Ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540652		P-0027995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	182	545	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0027995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	139	493	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
PGR	5241	MSKCC	GRCh37	11	100998739	100998739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	82	604	0	ENST00000325455.5:c.1063G>T	p.Val355Leu	p.V355L	ENST00000325455	NM_001202474.3	355	Gta/Tta																																																																															
DICER1	23405	MSKCC	GRCh37	14	95595913	95595913	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	98	499	0	ENST00000343455.3:c.630A>T	p.Leu210Phe	p.L210F	ENST00000343455	NM_177438.2	210	ttA/ttT																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259570	89259570	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs769787086		P-0027995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	62	327	1	ENST00000336596.2:c.714T>A	p.Asp238Glu	p.D238E	ENST00000336596	NM_005233.5	238	gaT/gaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0028065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	110	784	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522059	157522059	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770643408		P-0028065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	33	514	0	ENST00000346085.5:c.4331C>T	p.Pro1444Leu	p.P1444L	ENST00000346085	NM_020732.3	1444	cCg/cTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11227521	11227521	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	38	713	0	ENST00000361445.4:c.4307C>G	p.Ala1436Gly	p.A1436G	ENST00000361445	NM_004958.3	1436	gCc/gGc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344077	118344082	+	inframe_deletion	In_Frame_Del	DEL	AAAAGG	AAAAGG	-			P-0028065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	27	371	0	ENST00000534358.1:c.2208_2213del	p.Arg738_Lys739del	p.R738_K739del	ENST00000534358	NM_005933.3	735	AAAAGG/-																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117733	115117733	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	35	574	0	ENST00000257566.3:c.702del	p.Tyr234Ter	p.Y234*	ENST00000257566	NM_016569.3	234	taT/ta																																																																															
BLM	641	MSKCC	GRCh37	15	91298089	91298090	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0028065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	28	429	0	ENST00000355112.3:c.1010_1011del	p.Thr337IlefsTer9	p.T337Ifs*9	ENST00000355112	NM_000057.2	336	agCAca/agca																																																																															
SESN1	27244	MSKCC	GRCh37	6	109309684	109309793	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGAAGGAGACTACGAATCATTGCTAAGTTACAAAGTAAATAAGCCACAATAGGCACATACCTTCTCAGAGTGCTTGAACTGCCTCCAGAAGCTATCATACATTCTTTT	GGTGAAGGAGACTACGAATCATTGCTAAGTTACAAAGTAAATAAGCCACAATAGGCACATACCTTCTCAGAGTGCTTGAACTGCCTCCAGAAGCTATCATACATTCTTTT	-			P-0028065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	18	200	0	ENST00000436639.2:c.1522_1569+62del		p.X508_splice	ENST00000436639	NM_014454.2	508																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	276	554	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0028118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	381	623	1	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100080	157100094	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCCGC	GGCGGCGGCGGCCGC	-	rs775733700		P-0028118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	92	59	0	ENST00000346085.5:c.1029_1043del	p.Ala346_Ala350del	p.A346_A350del	ENST00000346085	NM_020732.3	339	gtGGCGGCGGCGGCCGCg/gtg																																																																															
BLM	641	MSKCC	GRCh37	15	91292797	91292798	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs1489224386		P-0028118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	156	532	0	ENST00000355112.3:c.303_304del	p.Gly102TrpfsTer40	p.G102Wfs*40	ENST00000355112	NM_000057.2	100	cAG/c																																																																															
EZH1	2145	MSKCC	GRCh37	17	40876321	40876321	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0028118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	304	534	0	ENST00000428826.2:c.366+2T>C		p.X122_splice	ENST00000428826		122																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52651430	52651430	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	349	593	0	ENST00000394830.3:c.1666C>A	p.Pro556Thr	p.P556T	ENST00000394830	NM_018313.4	556	Cct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7578539	7578539	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs587782160		P-0028119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	365	816	1	ENST00000269305.4:c.391A>T	p.Asn131Tyr	p.N131Y	ENST00000269305	NM_001126112.2	131	Aac/Tac																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50483670	50483670	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	47	310	0	ENST00000394963.4:c.775C>G	p.His259Asp	p.H259D	ENST00000394963	NM_003076.4	259	Cac/Gac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211985	36211985	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761171846		P-0028119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	114	917	1	ENST00000222270.7:c.1736C>T	p.Pro579Leu	p.P579L	ENST00000222270	NM_014727.1	579	cCa/cTa																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128036933	128036933	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs747849600		P-0028119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	147	415	0	ENST00000285398.2:c.1546C>G	p.Pro516Ala	p.P516A	ENST00000285398	NM_000122.1	516	Cct/Gct																																																																															
BCL6	604	MSKCC	GRCh37	3	187443314	187443314	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	54	305	0	ENST00000232014.4:c.1812C>G	p.Cys604Trp	p.C604W	ENST00000232014	NM_001130845.1	604	tgC/tgG																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5557668	5557672	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTT	CCCTT	-			P-0028119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	158	549	0	ENST00000397747.3:c.683_687del	p.Pro228LeufsTer54	p.P228Lfs*54	ENST00000397747	NM_025239.3	228	CCCTTc/c																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762108866		P-0028160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	42	296	3	ENST00000268489.5:c.10215dup	p.Gly3406ArgfsTer25	p.G3406Rfs*25	ENST00000268489	NM_006885.3	3405	-/C																																																																															
NF1	4763	MSKCC	GRCh37	17	29527462	29527462	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs76015786		P-0028160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	20	448	0	ENST00000358273.4:c.911G>A	p.Arg304Gln	p.R304Q	ENST00000358273	NM_001042492.2	304	cGa/cAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118380683	118380683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	21	453	1	ENST00000534358.1:c.10921G>A	p.Glu3641Lys	p.E3641K	ENST00000534358	NM_005933.3	3641	Gag/Aag																																																																															
DICER1	23405	MSKCC	GRCh37	14	95574369	95574369	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	18	292	0	ENST00000343455.3:c.2498A>T	p.Lys833Met	p.K833M	ENST00000343455	NM_177438.2	833	aAg/aTg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39729866	39729866	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs990347811		P-0028160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	53	433	0	ENST00000361337.2:c.1181C>T	p.Ser394Phe	p.S394F	ENST00000361337	NM_003286.2	394	tCt/tTt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87366947	87366961	+	inframe_deletion	In_Frame_Del	DEL	TGGTAATGCTGTTTC	TGGTAATGCTGTTTC	-			P-0028160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	48	572	0	ENST00000277120.3:c.1345_1359del	p.Val449_Leu453del	p.V449_L453del	ENST00000277120		448	tTGGTAATGCTGTTTCtg/ttg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510309	187510309	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	133	290	0	ENST00000441802.2:c.13204A>T	p.Asn4402Tyr	p.N4402Y	ENST00000441802	NM_005245.3	4402	Aac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	598	451	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	264	412	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	175	369	1	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	161	301	1	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	66	324	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	70	426	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18524215	18524215	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769408892		P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	55	475	1	ENST00000266497.5:c.1727C>T	p.Ala576Val	p.A576V	ENST00000266497		576	gCg/gTg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372184	55372184	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs915105324		P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	20	153	0	ENST00000297316.4:c.874G>A	p.Ala292Thr	p.A292T	ENST00000297316	NM_022454.3	292	Gcc/Acc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	67	397	2	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912580		P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	138	310	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686901	37686901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	97	338	0	ENST00000447079.4:c.3810del	p.Gly1271AspfsTer23	p.G1271Dfs*23	ENST00000447079	NM_015083.1	1269	Ccc/cc																																																																															
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	37	380	1	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743520	46743520	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141523334		P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	93	398	0	ENST00000371975.4:c.1901G>A	p.Arg634His	p.R634H	ENST00000371975	NM_003579.3	634	cGt/cAt																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186503787	186503789	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	54	435	0	ENST00000323963.5:c.470_472del	p.Val157del	p.V157del	ENST00000323963		155	aTTGtt/att																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366389	15366389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs577973488		P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	53	282	3	ENST00000263377.2:c.1766C>T	p.Ala589Val	p.A589V	ENST00000263377	NM_058243.2	589	gCg/gTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39911630	39911630	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754470140		P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	77	204	0	ENST00000378444.4:c.5000C>T	p.Ser1667Leu	p.S1667L	ENST00000378444	NM_001123385.1	1667	tCg/tTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515045	103515045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	34	294	0	ENST00000355739.4:c.1546C>T	p.Leu516Phe	p.L516F	ENST00000355739	NM_000123.3	516	Ctc/Ttc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609856	81609856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	101	290	1	ENST00000298171.2:c.1454C>T	p.Ala485Val	p.A485V	ENST00000298171	NM_000369.2	485	gCc/gTc																																																																															
MGA	23269	MSKCC	GRCh37	15	42021525	42021525	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	66	488	0	ENST00000219905.7:c.3821C>A	p.Pro1274His	p.P1274H	ENST00000219905	NM_001164273.1	1274	cCt/cAt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712782	43712783	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	85	492	0	ENST00000382044.4:c.4401_4402del	p.Pro1468ArgfsTer12	p.P1468Rfs*12	ENST00000382044	NM_001141980.1	1467	tcTCca/tcca																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43733754	43733754	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	33	385	0	ENST00000382044.4:c.3068G>T	p.Gly1023Val	p.G1023V	ENST00000382044	NM_001141980.1	1023	gGa/gTa																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217409	7217411	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-	rs776495886		P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	81	376	0	ENST00000380728.2:c.385_387del	p.Leu129del	p.L129del	ENST00000380728		129	CTC/-																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78858812	78858812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	45	381	1	ENST00000306801.3:c.1847G>A	p.Arg616His	p.R616H	ENST00000306801	NM_020761.2	616	cGc/cAc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367902	15367902	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	78	457	1	ENST00000263377.2:c.1424del	p.Pro475LeufsTer109	p.P475Lfs*109	ENST00000263377	NM_058243.2	475	cCt/ct																																																																															
CENPA	1058	MSKCC	GRCh37	2	27009126	27009138	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCGACCCCCGG	CCCCGACCCCCGG	-			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	61	125	0	ENST00000335756.4:c.66_78del	p.Thr23ProfsTer7	p.T23Pfs*7	ENST00000335756	NM_001809.3	21	aCCCCGACCCCCGGc/ac																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99181112	99181112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	237	453	0	ENST00000074304.5:c.2053C>A	p.Leu685Ile	p.L685I	ENST00000074304	NM_001134224.1	685	Ctc/Atc																																																																															
BARD1	580	MSKCC	GRCh37	2	215634033	215634033	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876658999		P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	23	365	1	ENST00000260947.4:c.1318G>A	p.Asp440Asn	p.D440N	ENST00000260947	NM_000465.2	440	Gac/Aac																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46281315	46281315	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1387775662		P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	60	249	0	ENST00000371998.3:c.4112C>T	p.Ala1371Val	p.A1371V	ENST00000371998		1371	gCc/gTc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524474	44524474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	52	280	0	ENST00000291552.4:c.83G>A	p.Arg28His	p.R28H	ENST00000291552	NM_006758.2	28	cGt/cAt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707779	176707779	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	192	401	0	ENST00000439151.2:c.5836A>G	p.Ile1946Val	p.I1946V	ENST00000439151	NM_022455.4	1946	Att/Gtt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205092	38205092	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	58	485	1	ENST00000317025.8:c.598del	p.Ser200AlafsTer20	p.S200Afs*20	ENST00000317025	NM_023034.1	200	Agc/gc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864745	68864745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	38	268	0	ENST00000288368.4:c.116T>C	p.Val39Ala	p.V39A	ENST00000288368	NM_024870.2	39	gTg/gCg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222486	53222486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	461	236	0	ENST00000375401.3:c.4346G>A	p.Arg1449Gln	p.R1449Q	ENST00000375401	NM_004187.3	1449	cGg/cAg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37673809	37673823	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTGAGTTTGGGGAA	TGTGAGTTTGGGGAA	G			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	181	466	0	ENST00000447079.4:c.2963_2963+14delinsG		p.X988_splice	ENST00000447079	NM_015083.1	988																																																																																
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0028377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	160	580	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
INSR	3643	MSKCC	GRCh37	19	7126642	7126642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	72	760	1	ENST00000302850.5:c.2966G>T	p.Gly989Val	p.G989V	ENST00000302850	NM_000208.2	989	gGa/gTa																																																																															
MED12	9968	MSKCC	GRCh37	X	70351993	70351993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	113	827	0	ENST00000374080.3:c.4190G>A	p.Gly1397Glu	p.G1397E	ENST00000374080		1397	gGg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0028489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	555	679	2	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
ALK	238	MSKCC	GRCh37	2	29416378	29416380	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs755556501		P-0028489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	630	739	2	ENST00000389048.3:c.4573_4575del	p.Lys1525del	p.K1525del	ENST00000389048	NM_004304.4	1525	AAG/-																																																																															
TSC2	7249	MSKCC	GRCh37	16	2113054	2113054	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0028489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	639	708	0	ENST00000219476.3:c.1443G>T	p.Glu481Asp	p.E481D	ENST00000219476	NM_000548.3	481	gaG/gaT																																																																															
HGF	3082	MSKCC	GRCh37	7	81331979	81331979	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763933267		P-0028489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	214	337	0	ENST00000222390.5:c.2105G>A	p.Arg702His	p.R702H	ENST00000222390	NM_000601.4	702	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0028516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	315	609	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98220333	98220333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138458710		P-0028516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	111	424	0	ENST00000331920.6:c.3130G>A	p.Ala1044Thr	p.A1044T	ENST00000331920	NM_000264.3	1044	Gct/Act																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195838	102195838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	55	403	0	ENST00000263464.3:c.598G>A	p.Gly200Arg	p.G200R	ENST00000263464	NM_001165.4	200	Gga/Aga																																																																															
TEK	7010	MSKCC	GRCh37	9	27220088	27220088	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760667841		P-0028516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	115	699	0	ENST00000380036.4:c.3145G>A	p.Glu1049Lys	p.E1049K	ENST00000380036	NM_000459.3	1049	Gag/Aag																																																																															
NF1	4763	MSKCC	GRCh37	17	29576111	29576111	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854560		P-0028529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	31	533	0	ENST00000358273.4:c.4084C>T	p.Arg1362Ter	p.R1362*	ENST00000358273	NM_001042492.2	1362	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579592	7579592	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs879254212		P-0028529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	38	593	0	ENST00000269305.4:c.97-2A>G		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0028576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	147	704	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0028576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	89	252	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061213	38061213	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	148	445	0	ENST00000250448.2:c.776A>G	p.Tyr259Cys	p.Y259C	ENST00000250448	NM_004496.3	259	tAc/tGc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519970		P-0028576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	203	518	1	ENST00000347630.2:c.393G>T	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgT																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162820	38162820	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	447	579	0	ENST00000317025.8:c.2386C>G	p.Gln796Glu	p.Q796E	ENST00000317025	NM_023034.1	796	Cag/Gag																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162848	38162848	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs757817622		P-0028576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	507	666	0	ENST00000317025.8:c.2358C>G	p.Ile786Met	p.I786M	ENST00000317025	NM_023034.1	786	atC/atG																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127915940	127915940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	266	503	1	ENST00000373547.4:c.541C>T	p.Arg181Trp	p.R181W	ENST00000373547	NM_002721.4	181	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	42	364	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271321	26271321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	35	454	0	ENST00000305910.3:c.292G>A	p.Glu98Lys	p.E98K	ENST00000305910	NM_003534.2	98	Gag/Aag																																																																															
TET2	54790	MSKCC	GRCh37	4	106155491	106155491	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	29	334	0	ENST00000380013.4:c.392G>T	p.Arg131Ile	p.R131I	ENST00000380013	NM_001127208.2	131	aGa/aTa																																																																															
EZH1	2145	MSKCC	GRCh37	17	40874888	40874888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	51	476	1	ENST00000428826.2:c.412G>A	p.Glu138Lys	p.E138K	ENST00000428826		138	Gaa/Aaa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710987	114710987	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	37	363	0	ENST00000543371.1:c.211C>G	p.Arg71Gly	p.R71G	ENST00000543371	NM_001198531.1	71	Cgc/Ggc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099423	27099423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1384822065		P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	60	512	0	ENST00000324856.7:c.3660G>A	p.Met1220Ile	p.M1220I	ENST00000324856	NM_006015.4	1220	atG/atA																																																																															
IL10	3586	MSKCC	GRCh37	1	206945760	206945761	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	112	422	0	ENST00000423557.1:c.20_21delinsAT	p.Leu7His	p.L7H	ENST00000423557	NM_000572.2	7	cTC/cAT																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940151	71940151	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs145769072		P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	60	713	0	ENST00000298229.2:c.536G>C	p.Ser179Thr	p.S179T	ENST00000298229	NM_001567.3	179	aGc/aCc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940566	71940566	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	71	603	0	ENST00000298229.2:c.717G>C	p.Gln239His	p.Q239H	ENST00000298229	NM_001567.3	239	caG/caC																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56787283	56787283	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs750551012		P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	43	441	0	ENST00000337432.4:c.769C>G	p.Leu257Val	p.L257V	ENST00000337432	NM_058216.2	257	Ctt/Gtt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910632	50910632	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1354117345		P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	68	677	0	ENST00000440232.2:c.1735G>A	p.Glu579Lys	p.E579K	ENST00000440232	NM_002691.3	579	Gag/Aag																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205192	128205192	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	52	476	0	ENST00000341105.2:c.249G>C	p.Gln83His	p.Q83H	ENST00000341105	NM_032638.4	83	caG/caC																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201794	66201794	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	43	462	0	ENST00000273854.3:c.2708G>T	p.Cys903Phe	p.C903F	ENST00000273854	NM_004439.5	903	tGt/tTt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741458	145741458	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1045634487		P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	83	776	0	ENST00000428558.2:c.1045G>A	p.Asp349Asn	p.D349N	ENST00000428558	NM_004260.3	349	Gac/Aac																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741857	145741857	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201301365		P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	54	673	0	ENST00000428558.2:c.646G>A	p.Glu216Lys	p.E216K	ENST00000428558	NM_004260.3	216	Gaa/Aaa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742108	145742108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	76	566	0	ENST00000428558.2:c.395G>A	p.Arg132Lys	p.R132K	ENST00000428558	NM_004260.3	132	aGa/aAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519989		P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	193	545	1	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17743021	17743021	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	124	673	0	ENST00000250003.3:c.929G>T	p.Gly310Val	p.G310V	ENST00000250003	NM_002478.4	310	gGt/gTt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212570070	212570070	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs745408040		P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	74	387	0	ENST00000342788.4:c.1171G>T	p.Val391Phe	p.V391F	ENST00000342788	NM_005235.2	391	Gtc/Ttc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105973	27105973	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	71	457	0	ENST00000324856.7:c.5584A>T	p.Lys1862Ter	p.K1862*	ENST00000324856	NM_006015.4	1862	Aag/Tag																																																																															
TET1	80312	MSKCC	GRCh37	10	70332390	70332390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	154	525	0	ENST00000373644.4:c.295T>A	p.Cys99Ser	p.C99S	ENST00000373644	NM_030625.2	99	Tgc/Agc																																																																															
SDHD	6392	MSKCC	GRCh37	11	111958623	111958623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	132	355	0	ENST00000375549.3:c.95C>T	p.Ser32Leu	p.S32L	ENST00000375549	NM_003002.3	32	tCa/tTa																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50484327	50484328	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	111	460	3	ENST00000394963.4:c.1087_1088delinsAT	p.Ala363Ile	p.A363I	ENST00000394963	NM_003076.4	363	GCc/ATc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434783	110434783	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	165	746	1	ENST00000375856.3:c.3618G>T	p.Gln1206His	p.Q1206H	ENST00000375856	NM_003749.2	1206	caG/caT																																																																															
FANCA	2175	MSKCC	GRCh37	16	89846317	89846317	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201323171		P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	133	644	0	ENST00000389301.3:c.1675G>A	p.Glu559Lys	p.E559K	ENST00000389301	NM_000135.2	559	Gag/Aag																																																																															
RARA	5914	MSKCC	GRCh37	17	38510593	38510593	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	131	652	0	ENST00000254066.5:c.847A>C	p.Thr283Pro	p.T283P	ENST00000254066	NM_000964.3	283	Acc/Ccc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78796039	78796039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	167	598	0	ENST00000306801.3:c.929G>A	p.Gly310Asp	p.G310D	ENST00000306801	NM_020761.2	310	gGt/gAt																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17389793	17389793	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	222	836	0	ENST00000359435.4:c.926G>T	p.Ser309Ile	p.S309I	ENST00000359435	NM_001033549.1	309	aGc/aTc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128030511	128030511	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	113	533	0	ENST00000285398.2:c.1757A>C	p.Gln586Pro	p.Q586P	ENST00000285398	NM_000122.1	586	cAg/cCg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566833	212566833	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	51	287	0	ENST00000342788.4:c.1348C>A	p.Leu450Met	p.L450M	ENST00000342788	NM_005235.2	450	Ctg/Atg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225368527	225368527	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	16	206	0	ENST00000264414.4:c.1219G>T	p.Glu407Ter	p.E407*	ENST00000264414	NM_003590.4	407	Gaa/Taa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790084	40790085	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AT			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	116	575	0	ENST00000373198.4:c.2646_2647delinsAT	p.Asp882_Gln883delinsGluTer	p.D882_Q883delinsE*	ENST00000373198	NM_133170.3	882	gaCCag/gaATag																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72861859	72861859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	145	560	0	ENST00000325599.8:c.1023G>A	p.Met341Ile	p.M341I	ENST00000325599	NM_018130.2	341	atG/atA																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205121	128205121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	127	557	0	ENST00000341105.2:c.320C>A	p.Ala107Asp	p.A107D	ENST00000341105	NM_032638.4	107	gCc/gAc																																																																															
BCL6	604	MSKCC	GRCh37	3	187447565	187447565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	83	542	0	ENST00000232014.4:c.628G>T	p.Asp210Tyr	p.D210Y	ENST00000232014	NM_001130845.1	210	Gat/Tat																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155245	55155245	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	98	505	0	ENST00000257290.5:c.2844G>T	p.Glu948Asp	p.E948D	ENST00000257290	NM_006206.4	948	gaG/gaT																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405809	157405809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	117	334	0	ENST00000346085.5:c.2051C>T	p.Ser684Phe	p.S684F	ENST00000346085	NM_020732.3	684	tCc/tTc																																																																															
SYK	6850	MSKCC	GRCh37	9	93640032	93640032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	50	267	0	ENST00000375746.1:c.1361G>A	p.Gly454Asp	p.G454D	ENST00000375746	NM_001174167.1	454	gGt/gAt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911461	101911461	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs1249384165		P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	46	232	0	ENST00000374994.4:c.1387-1G>T		p.X463_splice	ENST00000374994	NM_004612.2	463																																																																																
RAD54L	8438	MSKCC	GRCh37	1	46714262	46714262	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	98	358	0	ENST00000371975.4:c.82G>T	p.Gly28Cys	p.G28C	ENST00000371975	NM_003579.3	28	Ggc/Tgc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515263	103515263	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	68	330	0	ENST00000355739.4:c.1764C>A	p.Ser588Arg	p.S588R	ENST00000355739	NM_000123.3	588	agC/agA																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631837	90631837	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	123	431	0	ENST00000330062.3:c.516G>T	p.Arg172Ser	p.R172S	ENST00000330062	NM_002168.2	172	agG/agT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138572	11138572	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	116	532	0	ENST00000344626.4:c.3328A>G	p.Thr1110Ala	p.T1110A	ENST00000344626	NM_003072.3	1110	Acc/Gcc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52719125	52719125	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771769470		P-0028743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	129	528	0	ENST00000322088.6:c.901G>A	p.Ala301Thr	p.A301T	ENST00000322088	NM_014225.5	301	Gca/Aca																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0028743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	152	350	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570377	87570377	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	139	552	1	ENST00000277120.3:c.2117T>C	p.Val706Ala	p.V706A	ENST00000277120		706	gTg/gCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	63	314	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0028779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	75	312	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390072	89390072	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765502894		P-0028779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	27	157	0	ENST00000336596.2:c.821G>A	p.Arg274Gln	p.R274Q	ENST00000336596	NM_005233.5	274	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520008		P-0028779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	92	390	1	ENST00000269305.4:c.613T>G	p.Tyr205Asp	p.Y205D	ENST00000269305	NM_001126112.2	205	Tat/Gat																																																																															
SRC	6714	MSKCC	GRCh37	20	36030038	36030038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	88	382	0	ENST00000358208.4:c.1073G>A	p.Gly358Asp	p.G358D	ENST00000358208		358	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	32	169	0	ENST00000257430.4:c.3919dup	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	393	593	0	ENST00000269305.4:c.799C>G	p.Arg267Gly	p.R267G	ENST00000269305	NM_001126112.2	267	Cgg/Ggg																																																																															
APC	324	MSKCC	GRCh37	5	112173470	112174424	+	frameshift_variant	Frame_Shift_Del	DEL	AGGAATCTCATGGCAAATAGGCCTGCGAAGTACAAGGATGCCAATATTATGTCTCCTGGCTCAAGCTTGCCATCTCTTCATGTTAGGAAACAAAAAGCCCTAGAAGCAGAATTAGATGCTCAGCACTTATCAGAAACTTTTGACAATATAGACAATTTAAGTCCCAAGGCATCTCATCGTAGTAAGCAGAGACACAAGCAAAGTCTCTATGGTGATTATGTTTTTGACACCAATCGACATGATGATAATAGGTCAGACAATTTTAATACTGGCAACATGACTGTCCTTTCACCATATTTGAATACTACAGTGTTACCCAGCTCCTCTTCATCAAGAGGAAGCTTAGATAGTTCTCGTTCTGAAAAAGATAGAAGTTTGGAGAGAGAACGCGGAATTGGTCTAGGCAACTACCATCCAGCAACAGAAAATCCAGGAACTTCTTCAAAGCGAGGTTTGCAGATCTCCACCACTGCAGCCCAGATTGCCAAAGTCATGGAAGAAGTGTCAGCCATTCATACCTCTCAGGAAGACAGAAGTTCTGGGTCTACCACTGAATTACATTGTGTGACAGATGAGAGAAATGCACTTAGAAGAAGCTCTGCTGCCCATACACATTCAAACACTTACAATTTCACTAAGTCGGAAAATTCAAATAGGACATGTTCTATGCCTTATGCCAAATTAGAATACAAGAGATCTTCAAATGATAGTTTAAATAGTGTCAGTAGTAGTGATGGTTATGGTAAAAGAGGTCAAATGAAACCCTCGATTGAATCCTATTCTGAAGATGATGAAAGTAAGTTTTGCAGTTATGGTCAATACCCAGCCGACCTAGCCCATAAAATACATAGTGCAAATCATATGGATGATAATGATGGAGAACTAGATACACCAATAAATTATAGTCTTAAATATTCAGATGAGCAGTTGAACTCTGGAAGGCAAAGTCCTTCAC	AGGAATCTCATGGCAAATAGGCCTGCGAAGTACAAGGATGCCAATATTATGTCTCCTGGCTCAAGCTTGCCATCTCTTCATGTTAGGAAACAAAAAGCCCTAGAAGCAGAATTAGATGCTCAGCACTTATCAGAAACTTTTGACAATATAGACAATTTAAGTCCCAAGGCATCTCATCGTAGTAAGCAGAGACACAAGCAAAGTCTCTATGGTGATTATGTTTTTGACACCAATCGACATGATGATAATAGGTCAGACAATTTTAATACTGGCAACATGACTGTCCTTTCACCATATTTGAATACTACAGTGTTACCCAGCTCCTCTTCATCAAGAGGAAGCTTAGATAGTTCTCGTTCTGAAAAAGATAGAAGTTTGGAGAGAGAACGCGGAATTGGTCTAGGCAACTACCATCCAGCAACAGAAAATCCAGGAACTTCTTCAAAGCGAGGTTTGCAGATCTCCACCACTGCAGCCCAGATTGCCAAAGTCATGGAAGAAGTGTCAGCCATTCATACCTCTCAGGAAGACAGAAGTTCTGGGTCTACCACTGAATTACATTGTGTGACAGATGAGAGAAATGCACTTAGAAGAAGCTCTGCTGCCCATACACATTCAAACACTTACAATTTCACTAAGTCGGAAAATTCAAATAGGACATGTTCTATGCCTTATGCCAAATTAGAATACAAGAGATCTTCAAATGATAGTTTAAATAGTGTCAGTAGTAGTGATGGTTATGGTAAAAGAGGTCAAATGAAACCCTCGATTGAATCCTATTCTGAAGATGATGAAAGTAAGTTTTGCAGTTATGGTCAATACCCAGCCGACCTAGCCCATAAAATACATAGTGCAAATCATATGGATGATAATGATGGAGAACTAGATACACCAATAAATTATAGTCTTAAATATTCAGATGAGCAGTTGAACTCTGGAAGGCAAAGTCCTTCAC	-			P-0028842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	22	301	0	ENST00000257430.4:c.2181_3135del	p.Asn728MetfsTer10	p.N728Mfs*10	ENST00000257430	NM_000038.5	727	AGGAATCTCATGGCAAATAGGCCTGCGAAGTACAAGGATGCCAATATTATGTCTCCTGGCTCAAGCTTGCCATCTCTTCATGTTAGGAAACAAAAAGCCCTAGAAGCAGAATTAGATGCTCAGCACTTATCAGAAACTTTTGACAATATAGACAATTTAAGTCCCAAGGCATCTCATCGTAGTAAGCAGAGACACAAGCAAAGTCTCTATGGTGATTATGTTTTTGACACCAATCGACATGATGATAATAGGTCAGACAATTTTAATACTGGCAACATGACTGTCCTTTCACCATATTTGAATACTACAGTGTTACCCAGCTCCTCTTCATCAAGAGGAAGCTTAGATAGTTCTCGTTCTGAAAAAGATAGAAGTTTGGAGAGAGAACGCGGAATTGGTCTAGGCAACTACCATCCAGCAACAGAAAATCCAGGAACTTCTTCAAAGCGAGGTTTGCAGATCTCCACCACTGCAGCCCAGATTGCCAAAGTCATGGAAGAAGTGTCAGCCATTCATACCTCTCAGGAAGACAGAAGTTCTGGGTCTACCACTGAATTACATTGTGTGACAGATGAGAGAAATGCACTTAGAAGAAGCTCTGCTGCCCATACACATTCAAACACTTACAATTTCACTAAGTCGGAAAATTCAAATAGGACATGTTCTATGCCTTATGCCAAATTAGAATACAAGAGATCTTCAAATGATAGTTTAAATAGTGTCAGTAGTAGTGATGGTTATGGTAAAAGAGGTCAAATGAAACCCTCGATTGAATCCTATTCTGAAGATGATGAAAGTAAGTTTTGCAGTTATGGTCAATACCCAGCCGACCTAGCCCATAAAATACATAGTGCAAATCATATGGATGATAATGATGGAGAACTAGATACACCAATAAATTATAGTCTTAAATATTCAGATGAGCAGTTGAACTCTGGAAGGCAAAGTCCTTCACag/ag																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287955	33287955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	32	418	0	ENST00000374542.5:c.1298C>T	p.Ala433Val	p.A433V	ENST00000374542	NM_001141970.1	433	gCt/gTt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956557	93956557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	158	334	0	ENST00000369303.4:c.2679G>T	p.Met893Ile	p.M893I	ENST00000369303	NM_004440.3	893	atG/atT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	157	594	0	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	85	351	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
ATRX	546	MSKCC	GRCh37	X	76888799	76888799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	82	274	0	ENST00000373344.5:c.5030G>A	p.Gly1677Asp	p.G1677D	ENST00000373344	NM_000489.3	1677	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023968	27023975	+	frameshift_variant	Frame_Shift_Del	DEL	CCACGCGC	CCACGCGC	-			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	11	98	0	ENST00000324856.7:c.1077_1084del	p.Ala360GlufsTer37	p.A360Efs*37	ENST00000324856	NM_006015.4	358	caCCACGCGCcc/cacc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4101030	4101030	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730880511		P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	24	498	0	ENST00000262948.5:c.692G>T	p.Arg231Leu	p.R231L	ENST00000262948	NM_030662.3	231	cGc/cTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023571	27023571	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	22	336	0	ENST00000324856.7:c.680del	p.Pro227ArgfsTer5	p.P227Rfs*5	ENST00000324856	NM_006015.4	226	gCc/gc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433844	49433844	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	211	908	2	ENST00000301067.7:c.7709C>A	p.Pro2570His	p.P2570H	ENST00000301067	NM_003482.3	2570	cCc/cAc																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811685	102811685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	157	697	0	ENST00000307046.8:c.499G>A	p.Ala167Thr	p.A167T	ENST00000307046	NM_001111285.1	167	Gca/Aca																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3790472	3790472	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	128	602	1	ENST00000262367.5:c.4061C>A	p.Ala1354Asp	p.A1354D	ENST00000262367	NM_004380.2	1354	gCc/gAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351780	89351780	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1486498219		P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	221	889	0	ENST00000301030.4:c.1170T>G	p.Ser390Arg	p.S390R	ENST00000301030	NM_001256183.1	390	agT/agG																																																																															
CD79B	974	MSKCC	GRCh37	17	62006596	62006596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	94	504	1	ENST00000392795.3:c.683G>A	p.Gly228Asp	p.G228D	ENST00000392795	NM_001039933.1	228	gGc/gAc																																																																															
BARD1	580	MSKCC	GRCh37	2	215646047	215646047	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	77	549	0	ENST00000260947.4:c.551C>A	p.Ser184Tyr	p.S184Y	ENST00000260947	NM_000465.2	184	tCc/tAc																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495661	72495661	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	86	337	0	ENST00000477973.2:c.409A>T	p.Lys137Asn	p.K137N	ENST00000477973	NM_012234.5	137	aaA/aaT																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202822	128202822	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	80	625	0	ENST00000341105.2:c.898G>T	p.Ala300Ser	p.A300S	ENST00000341105	NM_032638.4	300	Gcc/Tcc																																																																															
TP63	8626	MSKCC	GRCh37	3	189584582	189584582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	31	409	1	ENST00000264731.3:c.878C>A	p.Pro293His	p.P293H	ENST00000264731	NM_003722.4	293	cCc/cAc																																																																															
KDR	3791	MSKCC	GRCh37	4	55972092	55972092	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs765996740		P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	87	423	0	ENST00000263923.4:c.1552G>T	p.Val518Phe	p.V518F	ENST00000263923	NM_002253.2	518	Gtt/Ttt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250823	153250823	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1159697496		P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	19	383	0	ENST00000281708.4:c.1236+1G>A		p.X412_splice	ENST00000281708	NM_033632.3	412																																																																																
APC	324	MSKCC	GRCh37	5	112174771	112174771	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	75	361	0	ENST00000257430.4:c.3482del	p.Asn1161IlefsTer4	p.N1161Ifs*4	ENST00000257430	NM_000038.5	1160	acA/ac																																																																															
APC	324	MSKCC	GRCh37	5	112178105	112178105	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	113	396	0	ENST00000257430.4:c.6814A>T	p.Arg2272Ter	p.R2272*	ENST00000257430	NM_000038.5	2272	Aga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2974217	2974217	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	129	700	0	ENST00000396946.4:c.1388G>T	p.Gly463Val	p.G463V	ENST00000396946	NM_032415.4	463	gGg/gTg																																																																															
MYC	4609	MSKCC	GRCh37	8	128750547	128750547	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	141	582	0	ENST00000377970.2:c.84C>A	p.Asp28Glu	p.D28E	ENST00000377970	NM_002467.4	28	gaC/gaA																																																																															
TEK	7010	MSKCC	GRCh37	9	27180361	27180361	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373027386		P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	70	353	0	ENST00000380036.4:c.1025G>A	p.Arg342Lys	p.R342K	ENST00000380036	NM_000459.3	342	aGa/aAa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390632	139390632	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	173	856	0	ENST00000277541.6:c.7559G>T	p.Trp2520Leu	p.W2520L	ENST00000277541	NM_017617.3	2520	tGg/tTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399786	139399786	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	132	592	0	ENST00000277541.6:c.4562G>C	p.Cys1521Ser	p.C1521S	ENST00000277541	NM_017617.3	1521	tGc/tCc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841196	15841196	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	69	194	0	ENST00000307771.7:c.1280G>T	p.Arg427Met	p.R427M	ENST00000307771	NM_005089.3	427	aGg/aTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0028926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	260	576	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0028926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	56	427	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016647	12016648	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0028926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	72	338	0	ENST00000353533.5:c.783_784del	p.Asp263CysfsTer4	p.D263Cfs*4	ENST00000353533	NM_003010.3	261	acAAga/acga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106081	8106083	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0028926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	36	477	0	ENST00000346208.3:c.902_904del	p.Ile301del	p.I301del	ENST00000346208		301	ATT/-																																																																															
BARD1	580	MSKCC	GRCh37	2	215674280	215674280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	97	483	0	ENST00000260947.4:c.14G>A	p.Arg5Gln	p.R5Q	ENST00000260947	NM_000465.2	5	cGg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0028938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	198	659	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0028938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	273	525	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
SDHB	6390	MSKCC	GRCh37	1	17355219	17355219	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121917755		P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	44	426	0	ENST00000375499.3:c.299C>T	p.Ser100Phe	p.S100F	ENST00000375499	NM_003000.2	100	tCt/tTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106915	27106915	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	151	411	0	ENST00000324856.7:c.6526C>T	p.Gln2176Ter	p.Q2176*	ENST00000324856	NM_006015.4	2176	Cag/Tag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63661961	63661961	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	121	390	0	ENST00000279873.7:c.65A>T	p.Tyr22Phe	p.Y22F	ENST00000279873	NM_032199.2	22	tAc/tTc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518211	103518211	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	25	310	0	ENST00000355739.4:c.2149G>T	p.Ala717Ser	p.A717S	ENST00000355739	NM_000123.3	717	Gct/Tct																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438216	110438216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	84	172	1	ENST00000375856.3:c.185C>A	p.Ala62Glu	p.A62E	ENST00000375856	NM_003749.2	62	gCg/gAg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724513	43724513	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	248	907	0	ENST00000382044.4:c.3554A>G	p.Gln1185Arg	p.Q1185R	ENST00000382044	NM_001141980.1	1185	cAg/cGg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858447	9858447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	93	470	0	ENST00000330684.3:c.2954C>A	p.Pro985His	p.P985H	ENST00000330684	NM_001134407.1	985	cCt/cAt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644758	67644758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	159	526	0	ENST00000264010.4:c.24del	p.Ile9LeufsTer53	p.I9Lfs*53	ENST00000264010	NM_006565.3	8	gCc/gc																																																																															
CDH1	999	MSKCC	GRCh37	16	68835795	68835798	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	AGGT	AGGT	-			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	43	499	0	ENST00000261769.5:c.387_387+3del		p.X129_splice	ENST00000261769	NM_004360.3	129																																																																																
TP53	7157	MSKCC	GRCh37	17	7577591	7577591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	167	580	0	ENST00000269305.4:c.690del	p.Thr231ProfsTer16	p.T231Pfs*16	ENST00000269305	NM_001126112.2	230	acC/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057520007		P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	76	719	0	ENST00000269305.4:c.614A>C	p.Tyr205Ser	p.Y205S	ENST00000269305	NM_001126112.2	205	tAt/tCt																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131409	17131409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	151	605	1	ENST00000285071.4:c.43G>T	p.Gly15Cys	p.G15C	ENST00000285071	NM_144997.5	15	Ggc/Tgc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119695	70119695	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	60	741	0	ENST00000245479.2:c.697G>T	p.Gly233Cys	p.G233C	ENST00000245479	NM_000346.3	233	Ggc/Tgc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295800	212295800	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	95	487	0	ENST00000342788.4:c.2513G>T	p.Arg838Leu	p.R838L	ENST00000342788	NM_005235.2	838	cGa/cTa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661111	227661111	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	134	640	0	ENST00000305123.5:c.2344G>T	p.Glu782Ter	p.E782*	ENST00000305123	NM_005544.2	782	Gag/Tag																																																																															
SRC	6714	MSKCC	GRCh37	20	36022674	36022674	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	79	551	0	ENST00000358208.4:c.547A>T	p.Thr183Ser	p.T183S	ENST00000358208		183	Acg/Tcg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827904	40827904	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	144	528	0	ENST00000373198.4:c.2524A>C	p.Ser842Arg	p.S842R	ENST00000373198	NM_133170.3	842	Agt/Cgt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230906	66230906	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	20	275	0	ENST00000273854.3:c.2065G>T	p.Val689Phe	p.V689F	ENST00000273854	NM_004439.5	689	Gtt/Ttt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524759	187524759	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	104	597	1	ENST00000441802.2:c.10921C>A	p.His3641Asn	p.H3641N	ENST00000441802	NM_005245.3	3641	Cac/Aac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187554975	187554975	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	34	231	0	ENST00000441802.2:c.4186G>A	p.Gly1396Ser	p.G1396S	ENST00000441802	NM_005245.3	1396	Ggc/Agc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946192	13946192	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	46	490	2	ENST00000405192.2:c.904G>T	p.Glu302Ter	p.E302*	ENST00000405192	NM_001163147.1	302	Gaa/Taa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528699	8528699	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	73	350	1	ENST00000356435.5:c.433A>T	p.Met145Leu	p.M145L	ENST00000356435		145	Atg/Ttg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635161	87635161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	101	402	0	ENST00000277120.3:c.2213C>T	p.Pro738Leu	p.P738L	ENST00000277120		738	cCa/cTa																																																																															
XIAP	331	MSKCC	GRCh37	X	123019994	123019994	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	113	365	0	ENST00000355640.3:c.482A>G	p.Tyr161Cys	p.Y161C	ENST00000355640		161	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0028989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	635	523	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342446	118342446	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0028989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	295	374	0	ENST00000534358.1:c.572C>G	p.Ser191Ter	p.S191*	ENST00000534358	NM_005933.3	191	tCa/tGa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781210	3781210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	576	600	0	ENST00000262367.5:c.5155C>A	p.His1719Asn	p.H1719N	ENST00000262367	NM_004380.2	1719	Cac/Aac																																																																															
CIC	23152	MSKCC	GRCh37	19	42799188	42799188	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1376	563	522	0	ENST00000575354.2:c.4672G>T	p.Asp1558Tyr	p.D1558Y	ENST00000575354	NM_015125.3	1558	Gac/Tac																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139794970	139794970	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0028989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	534	556	0	ENST00000247668.2:c.364G>T	p.Glu122Ter	p.E122*	ENST00000247668	NM_021138.3	122	Gag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256735	16256735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	192	375	0	ENST00000375759.3:c.4000G>A	p.Glu1334Lys	p.E1334K	ENST00000375759	NM_015001.2	1334	Gaa/Aaa																																																																															
WT1	7490	MSKCC	GRCh37	11	32456384	32456384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	226	285	0	ENST00000332351.3:c.508G>T	p.Gly170Cys	p.G170C	ENST00000332351	NM_024426.4	170	Ggc/Tgc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118366231	118366975	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTGAGATATTTTTTAAAATATTGAGTTCTGTGTACTTCAGCAATTTTCAAACGCTGTGACTTGTTCTTATATTCTGTGAATGGCTCCTACATGGGGCAACAGGTGATATCAAGAATTTATTTTATACAGTTCTAGGTATACTGTAGGAGTTCAATAAATGCTTGTTGAATCAATTATTTTCAGCAGTGGGATGTTACCAAACGCAGTGCTTCCACCTTCACTTGACCATAATTATGCTCAGTGGCAGGAGCGAGAGGAAAACAGCCACACTGAGCAGCCTCCTTTAATGAAGAAAATCATTCCAGCTCCCAAACCCAAAGGTCCTGGAGAACCAGACTCACCAACTCCTCTGCATCCTCCTACACCACCAATTTTGAGTAAGCCACCAAAAGGAGAGTCGTCACCCATTTCCCTCTAGATGCAGATGATTGACTTCGTGAATCCAATTCACTAAAATTAGATATACTTGGATATCAGAAAGGAATTTTCAGGTCATCCTTAAATGTAATACCATCATTAATTTTGCTTCACTTGAGGTGTTAATGAGGACTTGATATAAATACTCTGGAGTATTGTAACATAGATGATGAGGTAGCGTAACTCTGAACACTTTTTGAAAAGTGGTTATTTTATAGGCTGTGGGCTATGTAAGCTGAATTATTTCTTTTTTCCTTGAAATCAGACATAGTATTGCCAATTTTAACTGGATCTCAAGGTATTGATGGGAGTCTTTTGGATTTCAAG	GTTGAGATATTTTTTAAAATATTGAGTTCTGTGTACTTCAGCAATTTTCAAACGCTGTGACTTGTTCTTATATTCTGTGAATGGCTCCTACATGGGGCAACAGGTGATATCAAGAATTTATTTTATACAGTTCTAGGTATACTGTAGGAGTTCAATAAATGCTTGTTGAATCAATTATTTTCAGCAGTGGGATGTTACCAAACGCAGTGCTTCCACCTTCACTTGACCATAATTATGCTCAGTGGCAGGAGCGAGAGGAAAACAGCCACACTGAGCAGCCTCCTTTAATGAAGAAAATCATTCCAGCTCCCAAACCCAAAGGTCCTGGAGAACCAGACTCACCAACTCCTCTGCATCCTCCTACACCACCAATTTTGAGTAAGCCACCAAAAGGAGAGTCGTCACCCATTTCCCTCTAGATGCAGATGATTGACTTCGTGAATCCAATTCACTAAAATTAGATATACTTGGATATCAGAAAGGAATTTTCAGGTCATCCTTAAATGTAATACCATCATTAATTTTGCTTCACTTGAGGTGTTAATGAGGACTTGATATAAATACTCTGGAGTATTGTAACATAGATGATGAGGTAGCGTAACTCTGAACACTTTTTGAAAAGTGGTTATTTTATAGGCTGTGGGCTATGTAAGCTGAATTATTTCTTTTTTCCTTGAAATCAGACATAGTATTGCCAATTTTAACTGGATCTCAAGGTATTGATGGGAGTCTTTTGGATTTCAAG	-			P-0028994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	116	7	0	ENST00000534358.1:c.5364-182_5559del		p.X1788_splice	ENST00000534358	NM_005933.3	1788																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134825431	134825447	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	AAGTGGCATGCACTAGT	AAGTGGCATGCACTAGT	-			P-0028994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	50	226	0	ENST00000398015.3:c.952_961+7del		p.X318_splice	ENST00000398015	NM_004441.4	318																																																																																
BTK	695	MSKCC	GRCh37	X	100611880	100611880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	84	415	1	ENST00000308731.7:c.1241G>A	p.Gly414Glu	p.G414E	ENST00000308731	NM_000061.2	414	gGg/gAg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264145	46264145	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	165	302	0	ENST00000371998.3:c.1192G>C	p.Val398Leu	p.V398L	ENST00000371998		398	Gta/Cta																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522087	157522087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	253	442	0	ENST00000346085.5:c.4359G>T	p.Gln1453His	p.Q1453H	ENST00000346085	NM_020732.3	1453	caG/caT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	96	483	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ATM	472	MSKCC	GRCh37	11	108216596	108216596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587778080		P-0029022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	85	354	0	ENST00000278616.4:c.8545C>T	p.Arg2849Ter	p.R2849*	ENST00000278616	NM_000051.3	2849	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112154981	112154981	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	121	481	1	ENST00000257430.4:c.1252G>T	p.Glu418Ter	p.E418*	ENST00000257430	NM_000038.5	418	Gaa/Taa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589553	67589612	+	inframe_deletion	In_Frame_Del	DEL	AAGATAATATTGAAGCTGTAGGGAAAAAATTACATGAATATAACACTCAGTTTCAAGAAA	AAGATAATATTGAAGCTGTAGGGAAAAAATTACATGAATATAACACTCAGTTTCAAGAAA	-			P-0029022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	50	325	0	ENST00000274335.5:c.1318_1377del	p.Asp440_Lys459del	p.D440_K459del	ENST00000274335		439	gAAGATAATATTGAAGCTGTAGGGAAAAAATTACATGAATATAACACTCAGTTTCAAGAAAaa/gaa																																																																															
APC	324	MSKCC	GRCh37	5	112175865	112175867	+	frameshift_variant	Frame_Shift_Del	DEL	TGC	TGC	A			P-0029022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	46	292	0	ENST00000257430.4:c.4574_4576delinsA	p.Met1525AsnfsTer7	p.M1525Nfs*7	ENST00000257430	NM_000038.5	1525	aTGCct/aAct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	260	498	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0029023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	780	800	0	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag																																																																															
DICER1	23405	MSKCC	GRCh37	14	95596457	95596457	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	225	570	0	ENST00000343455.3:c.511C>G	p.Leu171Val	p.L171V	ENST00000343455	NM_177438.2	171	Ctt/Gtt																																																																															
NBN	4683	MSKCC	GRCh37	8	90965548	90965548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	189	479	0	ENST00000265433.3:c.1769G>A	p.Arg590Lys	p.R590K	ENST00000265433	NM_002485.4	590	aGa/aAa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068405	26068405	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	295	607	0	ENST00000435504.4:c.85A>G	p.Met29Val	p.M29V	ENST00000435504		29	Atg/Gtg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696466	47696466	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	231	361	0	ENST00000347630.2:c.357T>A	p.Ser119Arg	p.S119R	ENST00000347630	NM_001007230.1	119	agT/agA																																																																															
HGF	3082	MSKCC	GRCh37	7	81334852	81334852	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0029059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	91	320	0	ENST00000222390.5:c.1865-1G>A		p.X622_splice	ENST00000222390	NM_000601.4	622																																																																																
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	534	702	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
AGO2	27161	MSKCC	GRCh37	8	141551295	141551295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	248	769	1	ENST00000220592.5:c.2002C>T	p.Arg668Cys	p.R668C	ENST00000220592	NM_012154.3	668	Cgc/Tgc																																																																															
RB1	5925	MSKCC	GRCh37	13	49030378	49030378	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0029140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	143	338	0	ENST00000267163.4:c.1853C>G	p.Ser618Ter	p.S618*	ENST00000267163	NM_000321.2	618	tCa/tGa																																																																															
AXL	558	MSKCC	GRCh37	19	41762511	41762511	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200253980		P-0029140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	85	297	0	ENST00000301178.4:c.2191G>A	p.Asp731Asn	p.D731N	ENST00000301178	NM_021913.4	731	Gat/Aat																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31431696	31431696	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs776346705		P-0029140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	74	399	0	ENST00000344624.3:c.3132T>G	p.Phe1044Leu	p.F1044L	ENST00000344624		1044	ttT/ttG																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945702	151945702	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0029140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	86	286	0	ENST00000262189.6:c.1817C>G	p.Ser606Ter	p.S606*	ENST00000262189	NM_170606.2	606	tCa/tGa																																																																															
NBN	4683	MSKCC	GRCh37	8	90965627	90965627	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	93	290	0	ENST00000265433.3:c.1690G>T	p.Glu564Ter	p.E564*	ENST00000265433	NM_002485.4	564	Gaa/Taa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771839	135771839	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs550526986		P-0029140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	162	564	0	ENST00000298552.3:c.3278G>C	p.Arg1093Pro	p.R1093P	ENST00000298552	NM_001162426.1	1093	cGa/cCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0029141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	114	313	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508563	106508563	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757016725		P-0029141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	31	304	0	ENST00000359195.3:c.557C>T	p.Ala186Val	p.A186V	ENST00000359195	NM_002649.2	186	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577531	7577531	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	94	628	0	ENST00000269305.4:c.750del	p.Ile251SerfsTer94	p.I251Sfs*94	ENST00000269305	NM_001126112.2	250	ccC/cc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838003	156838003	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761633256		P-0029141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	52	827	0	ENST00000524377.1:c.536G>A	p.Gly179Glu	p.G179E	ENST00000524377	NM_002529.3	179	gGg/gAg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302866	15302866	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	55	774	1	ENST00000263388.2:c.584A>T	p.Glu195Val	p.E195V	ENST00000263388	NM_000435.2	195	gAg/gTg																																																																															
HRAS	3265	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28933406		P-0029183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	37	831	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984021	2984021	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766268425		P-0029183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	30	636	0	ENST00000396946.4:c.509G>A	p.Arg170His	p.R170H	ENST00000396946	NM_032415.4	170	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578456	7578464	+	inframe_deletion	In_Frame_Del	DEL	GCGGACGCG	GCGGACGCG	-			P-0029183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	297	786	0	ENST00000269305.4:c.466_474del	p.Arg156_Arg158del	p.R156_R158del	ENST00000269305	NM_001126112.2	156	CGCGTCCGC/-																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696450	47696450	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	40	474	0	ENST00000347630.2:c.373T>C	p.Phe125Leu	p.F125L	ENST00000347630	NM_001007230.1	125	Ttt/Ctt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969384	44969384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	25	351	0	ENST00000377967.4:c.4066G>A	p.Val1356Ile	p.V1356I	ENST00000377967	NM_021140.2	1356	Gta/Ata																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52595810	52595810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	107	443	0	ENST00000394830.3:c.4105G>C	p.Glu1369Gln	p.E1369Q	ENST00000394830	NM_018313.4	1369	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519997		P-0029291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	337	650	1	ENST00000269305.4:c.332T>A	p.Leu111Gln	p.L111Q	ENST00000269305	NM_001126112.2	111	cTg/cAg																																																																															
SDHB	6390	MSKCC	GRCh37	1	17355174	17355174	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200973284		P-0029291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	325	477	0	ENST00000375499.3:c.344G>A	p.Arg115Gln	p.R115Q	ENST00000375499	NM_003000.2	115	cGa/cAa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52595786	52595786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	85	377	0	ENST00000394830.3:c.4129G>A	p.Glu1377Lys	p.E1377K	ENST00000394830	NM_018313.4	1377	Gaa/Aaa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805979	32805979	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1293561966		P-0029291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	132	609	0	ENST00000374899.4:c.32C>T	p.Ser11Phe	p.S11F	ENST00000374899	NM_018833.2	11	tCc/tTc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881027	37881027	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8159	4436	662	0	ENST00000269571.5:c.2356C>G	p.Leu786Val	p.L786V	ENST00000269571		786	Ctg/Gtg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883793	37884641	+	splice_donor_variant,splice_acceptor_variant,stop_lost,3_prime_UTR_variant,intron_variant	Splice_Site	DEL	CCAGCCTGGTATGGAGTCCAGTCTAAGCAGAGAGACTGATGGGCAGGGGAGGTGGGACCTTCAGCCCAGGGTCCACTGTGGGGGCAGAGGGAGTGGCAGAGACACCGGGGTTCCTTCCCCTAATGGGTCACCTTCTCTTGACCTTTCAGAATATGTGAACCAGCCAGATGTTCGGCCCCAGCCCCCTTCGCCCCGAGAGGGCCCTCTGCCTGCTGCCCGACCTGCTGGTGCCACTCTGGAAAGGCCCAAGACTCTCTCCCCAGGGAAGAATGGGGTCGTCAAAGACGTTTTTGCCTTTGGGGGTGCCGTGGAGAACCCCGAGTACTTGACACCCCAGGGAGGAGCTGCCCCTCAGCCCCACCCTCCTCCTGCCTTCAGCCCAGCCTTCGACAACCTCTATTACTGGGACCAGGACCCACCAGAGCGGGGGGCTCCACCCAGCACCTTCAAAGGGACACCTACGGCAGAGAACCCAGAGTACCTGGGTCTGGACGTGCCAGTGTGAACCAGAAGGCCAAGTCCGCAGAAGCCCTGATGTGTCCTCAGGGAGCAGGGAAGGCCTGACTTCTGCTGGCATCAAGAGGTGGGAGGGCCCTCCGACCACTTCCAGGGGAACCTGCCATGCCAGGAACCTGTCCTAAGGAACCTTCCTTCCTGCTTGAGTTCCCAGATGGCTGGAAGGGGTCCAGCCTCGTTGGAAGAGGAACAGCACTGGGGAGTCTTTGTGGATTCTGAGGCCCTGCCCAATGAGACTCTAGGGTCCAGTGGATGCCACAGCCCAGCTTGGCCCTTTCCTTCCAGATCCTGGGTACTGAAAGCCTTAGGGAAGCTGGCCTGAGAGGGGAAGCG	CCAGCCTGGTATGGAGTCCAGTCTAAGCAGAGAGACTGATGGGCAGGGGAGGTGGGACCTTCAGCCCAGGGTCCACTGTGGGGGCAGAGGGAGTGGCAGAGACACCGGGGTTCCTTCCCCTAATGGGTCACCTTCTCTTGACCTTTCAGAATATGTGAACCAGCCAGATGTTCGGCCCCAGCCCCCTTCGCCCCGAGAGGGCCCTCTGCCTGCTGCCCGACCTGCTGGTGCCACTCTGGAAAGGCCCAAGACTCTCTCCCCAGGGAAGAATGGGGTCGTCAAAGACGTTTTTGCCTTTGGGGGTGCCGTGGAGAACCCCGAGTACTTGACACCCCAGGGAGGAGCTGCCCCTCAGCCCCACCCTCCTCCTGCCTTCAGCCCAGCCTTCGACAACCTCTATTACTGGGACCAGGACCCACCAGAGCGGGGGGCTCCACCCAGCACCTTCAAAGGGACACCTACGGCAGAGAACCCAGAGTACCTGGGTCTGGACGTGCCAGTGTGAACCAGAAGGCCAAGTCCGCAGAAGCCCTGATGTGTCCTCAGGGAGCAGGGAAGGCCTGACTTCTGCTGGCATCAAGAGGTGGGAGGGCCCTCCGACCACTTCCAGGGGAACCTGCCATGCCAGGAACCTGTCCTAAGGAACCTTCCTTCCTGCTTGAGTTCCCAGATGGCTGGAAGGGGTCCAGCCTCGTTGGAAGAGGAACAGCACTGGGGAGTCTTTGTGGATTCTGAGGCCCTGCCCAATGAGACTCTAGGGTCCAGTGGATGCCACAGCCCAGCTTGGCCCTTTCCTTCCAGATCCTGGGTACTGAAAGCCTTAGGGAAGCTGGCCTGAGAGGGGAAGCG	-			P-0029291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8361	3604	688	1	ENST00000269571.5:c.3405_*344del		p.X1135_splice	ENST00000269571		1135																																																																																
EPAS1	2034	MSKCC	GRCh37	2	46603835	46603835	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1283870670		P-0029291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	111	511	0	ENST00000263734.3:c.1192G>A	p.Glu398Lys	p.E398K	ENST00000263734	NM_001430.4	398	Gag/Aag																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719181	61719181	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	46	326	0	ENST00000401558.2:c.1876C>T	p.Gln626Ter	p.Q626*	ENST00000401558	NM_003400.3	626	Cag/Tag																																																																															
MST1	4485	MSKCC	GRCh37	3	49723585	49723585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	17	49	0	ENST00000449682.2:c.1057G>A	p.Glu353Lys	p.E353K	ENST00000449682	NM_020998.3	353	Gag/Aag																																																																															
ATR	545	MSKCC	GRCh37	3	142168426	142168426	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1227410272		P-0029291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	45	332	0	ENST00000350721.4:c.7780G>C	p.Asp2594His	p.D2594H	ENST00000350721	NM_001184.3	2594	Gac/Cac																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045953	26045953	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	111	397	0	ENST00000540144.1:c.315C>A	p.Phe105Leu	p.F105L	ENST00000540144	NM_003531.2	105	ttC/ttA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	231	728	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112174580	112174580	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	34	509	0	ENST00000257430.4:c.3289G>T	p.Glu1097Ter	p.E1097*	ENST00000257430	NM_000038.5	1097	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579440	7579440	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	246	892	0	ENST00000269305.4:c.247del	p.Ala83ArgfsTer40	p.A83Rfs*40	ENST00000269305	NM_001126112.2	83	Gcg/cg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523645	176523645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	223	913	0	ENST00000292408.4:c.2056G>A	p.Gly686Arg	p.G686R	ENST00000292408	NM_213647.1	686	Ggg/Agg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267710	198267710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	70	446	0	ENST00000335508.6:c.1769G>T	p.Arg590Ile	p.R590I	ENST00000335508	NM_012433.2	590	aGa/aTa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039888	47039888	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	249	476	0	ENST00000329236.7:c.997C>T	p.Gln333Ter	p.Q333*	ENST00000329236	NM_001204466.1	333	Cag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29657369	29657369	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	129	684	0	ENST00000358273.4:c.5665G>T	p.Glu1889Ter	p.E1889*	ENST00000358273	NM_001042492.2	1889	Gag/Tag																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983018	201983018	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	66	947	0	ENST00000359651.3:c.867C>G	p.Asn289Lys	p.N289K	ENST00000359651		289	aaC/aaG																																																																															
AKT3	10000	MSKCC	GRCh37	1	243809238	243809238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	75	517	0	ENST00000263826.5:c.386G>T	p.Gly129Val	p.G129V	ENST00000263826	NM_005465.4	129	gGa/gTa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344803	118344803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	112	473	1	ENST00000534358.1:c.2929G>T	p.Gly977Cys	p.G977C	ENST00000534358	NM_005933.3	977	Ggc/Tgc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281653	49281653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	230	855	0	ENST00000282018.3:c.700C>A	p.Pro234Thr	p.P234T	ENST00000282018	NM_020377.2	234	Cca/Aca																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436516	110436516	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1204315518		P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	231	868	0	ENST00000375856.3:c.1885C>T	p.Pro629Ser	p.P629S	ENST00000375856	NM_003749.2	629	Cca/Tca																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128050268	128050268	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1211945316		P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	168	597	0	ENST00000285398.2:c.389G>T	p.Gly130Val	p.G130V	ENST00000285398	NM_000122.1	130	gGg/gTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713470	40713470	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1318044562		P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	165	668	0	ENST00000373198.4:c.4045C>G	p.Arg1349Gly	p.R1349G	ENST00000373198	NM_133170.3	1349	Cgt/Ggt																																																																															
APC	324	MSKCC	GRCh37	5	112174494	112174494	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	60	431	0	ENST00000257430.4:c.3203C>G	p.Ser1068Ter	p.S1068*	ENST00000257430	NM_000038.5	1068	tCa/tGa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149514331	149514331	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	135	542	0	ENST00000261799.4:c.613T>G	p.Tyr205Asp	p.Y205D	ENST00000261799	NM_002609.3	205	Tat/Gat																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522717	176522717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	169	810	0	ENST00000292408.4:c.1814C>A	p.Ser605Tyr	p.S605Y	ENST00000292408	NM_213647.1	605	tCc/tAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518430	8518430	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	49	229	0	ENST00000356435.5:c.962-1G>T		p.X321_splice	ENST00000356435		321																																																																																
FANCC	2176	MSKCC	GRCh37	9	97869526	97869526	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	141	568	0	ENST00000289081.3:c.1355A>T	p.His452Leu	p.H452L	ENST00000289081	NM_000136.2	452	cAc/cTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409106	139409106	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	200	957	0	ENST00000277541.6:c.2063A>G	p.His688Arg	p.H688R	ENST00000277541	NM_017617.3	688	cAc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577111	7577111	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs786202082		P-0022110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	214	872	7	ENST00000269305.4:c.827C>A	p.Ala276Asp	p.A276D	ENST00000269305	NM_001126112.2	276	gCc/gAc																																																																															
ERF	2077	MSKCC	GRCh37	19	42752627	42752627	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs936669722		P-0022110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	55	672	0	ENST00000222329.4:c.1637G>A	p.Arg546Gln	p.R546Q	ENST00000222329	NM_006494.2	546	cGa/cAa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489095	56489095	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1427383787		P-0022110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	107	635	1	ENST00000267101.3:c.1913+1G>A		p.X638_splice	ENST00000267101	NM_001982.3	638																																																																																
RNF43	54894	MSKCC	GRCh37	17	56435744	56435744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	26	618	0	ENST00000407977.2:c.1393G>A	p.Asp465Asn	p.D465N	ENST00000407977		465	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0022117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	243	672	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856394	111856394	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1194532448		P-0022117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	107	216	0	ENST00000341259.2:c.445C>T	p.Arg149Cys	p.R149C	ENST00000341259	NM_005475.2	149	Cgc/Tgc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281855	49281855	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	138	691	0	ENST00000282018.3:c.902A>C	p.Asn301Thr	p.N301T	ENST00000282018	NM_020377.2	301	aAt/aCt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061023	38061024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0022117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	52	362	0	ENST00000250448.2:c.964_965dup	p.Pro324ArgfsTer27	p.P324Rfs*27	ENST00000250448	NM_004496.3	322	ggc/ggGGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	107	816	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577562	7577563	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGT			P-0022128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	187	770	0	ENST00000269305.4:c.716_718dup	p.Asn239dup	p.N239dup	ENST00000269305	NM_001126112.2	239	agt/aACAgt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44935940	44935940	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0022128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	43	211	0	ENST00000377967.4:c.2703-2A>G		p.X901_splice	ENST00000377967	NM_021140.2	901																																																																																
RNF43	54894	MSKCC	GRCh37	17	56492891	56492891	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	21	400	0	ENST00000407977.2:c.48del	p.Leu17Ter	p.L17*	ENST00000407977		16	ctG/ct																																																																															
BRCA2	675	MSKCC	GRCh37	13	32944566	32944566	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	190	762	0	ENST00000380152.3:c.8359C>G	p.Arg2787Gly	p.R2787G	ENST00000380152		2787	Cgc/Ggc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32944589	32944589	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs80359084		P-0022156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	208	820	0	ENST00000380152.3:c.8382C>G	p.Phe2794Leu	p.F2794L	ENST00000380152		2794	ttC/ttG																																																																															
RB1	5925	MSKCC	GRCh37	13	48936950	48936950	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0022156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	23	413	0	ENST00000267163.4:c.719-1G>A		p.X240_splice	ENST00000267163	NM_000321.2	240																																																																																
MGA	23269	MSKCC	GRCh37	15	42058897	42058897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	26	499	0	ENST00000219905.7:c.8617G>A	p.Ala2873Thr	p.A2873T	ENST00000219905	NM_001164273.1	2873	Gca/Aca																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591826	48591826	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	161	611	0	ENST00000342988.3:c.989A>T	p.Glu330Val	p.E330V	ENST00000342988	NM_005359.5	330	gAa/gTa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41268826	41268826	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	25	679	0	ENST00000349496.5:c.1064C>A	p.Pro355Gln	p.P355Q	ENST00000349496	NM_001904.3	355	cCg/cAg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992664	68992676	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	GTCTTTTTCTGTA	GTCTTTTTCTGTA	-			P-0022156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	40	636	0	ENST00000288368.4:c.1643-11_1644del		p.X548_splice	ENST00000288368	NM_024870.2	548																																																																																
SYK	6850	MSKCC	GRCh37	9	93624605	93624605	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs746979231		P-0022156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	118	671	0	ENST00000375746.1:c.696G>C	p.Lys232Asn	p.K232N	ENST00000375746	NM_001174167.1	232	aaG/aaC																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188804	32188821	+	inframe_deletion	In_Frame_Del	DEL	CTGGCAGGTGCCCCCATT	CTGGCAGGTGCCCCCATT	-			P-0022156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	35	932	0	ENST00000375023.3:c.733_750del	p.Asn245_Gln250del	p.N245_Q250del	ENST00000375023	NM_004557.3	245	AATGGGGGCACCTGCCAG/-																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256670	16256670	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	134	553	1	ENST00000375759.3:c.3935A>T	p.Tyr1312Phe	p.Y1312F	ENST00000375759	NM_015001.2	1312	tAt/tTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827928	72827929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	188	756	0	ENST00000268489.5:c.8652dup	p.Glu2885Ter	p.E2885*	ENST00000268489	NM_006885.3	2884	-/T																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832341	72832341	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375134893		P-0022197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	48	529	0	ENST00000268489.5:c.4240G>A	p.Glu1414Lys	p.E1414K	ENST00000268489	NM_006885.3	1414	Gaa/Aaa																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0022291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	165	435	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220578	1220578	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0022291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	261	696	1	ENST00000326873.7:c.598-2A>T		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																																
TSC1	7248	MSKCC	GRCh37	9	135781380	135781380	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751125011		P-0022291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	149	568	1	ENST00000298552.3:c.1585G>A	p.Ala529Thr	p.A529T	ENST00000298552	NM_001162426.1	529	Gcc/Acc																																																																															
STK40	83931	MSKCC	GRCh37	1	36826887	36826887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	326	754	0	ENST00000373129.3:c.47G>T	p.Arg16Met	p.R16M	ENST00000373129	NM_032017.1	16	aGg/aTg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206651643	206651643	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	176	801	0	ENST00000367120.3:c.953A>T	p.Gln318Leu	p.Q318L	ENST00000367120	NM_014002.3	318	cAg/cTg																																																																															
ATM	472	MSKCC	GRCh37	11	108186757	108186757	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	42	468	0	ENST00000278616.4:c.6115G>T	p.Glu2039Ter	p.E2039*	ENST00000278616	NM_000051.3	2039	Gaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108218027	108218027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	116	375	0	ENST00000278616.4:c.8606G>A	p.Gly2869Asp	p.G2869D	ENST00000278616	NM_000051.3	2869	gGt/gAt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302935	15302936	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0022291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	358	879	1	ENST00000263388.2:c.514_515delinsTT	p.Gly172Phe	p.G172F	ENST00000263388	NM_000435.2	172	GGc/TTc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31388732	31388732	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0022291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	119	528	0	ENST00000328111.2:c.1996+1G>A		p.X666_splice	ENST00000328111	NM_006892.3	666																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	268	477	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1131691023		P-0022337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	50	895	0	ENST00000269305.4:c.470T>C	p.Val157Ala	p.V157A	ENST00000269305	NM_001126112.2	157	gTc/gCc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984825	72984825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	141	663	0	ENST00000268489.5:c.2759G>A	p.Gly920Glu	p.G920E	ENST00000268489	NM_006885.3	920	gGg/gAg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111514	8111515	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0022364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	577	710	0	ENST00000346208.3:c.1002_1003del	p.Asp335ProfsTer16	p.D335Pfs*16	ENST00000346208		334	GGg/g																																																																															
MSI1	4440	MSKCC	GRCh37	12	120796817	120796817	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1210336675		P-0022364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	77	749	2	ENST00000257552.2:c.442C>T	p.Arg148Trp	p.R148W	ENST00000257552	NM_002442.3	148	Cgg/Tgg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497284	149497284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	53	704	0	ENST00000261799.4:c.3034G>C	p.Val1012Leu	p.V1012L	ENST00000261799	NM_002609.3	1012	Gtg/Ctg																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612923	228612923	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1201973529		P-0022372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	145	730	2	ENST00000366696.1:c.104G>A	p.Gly35Asp	p.G35D	ENST00000366696	NM_003493.2	35	gGc/gAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056279	27056279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	125	621	0	ENST00000324856.7:c.1275G>T	p.Gln425His	p.Q425H	ENST00000324856	NM_006015.4	425	caG/caT																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946465	71946465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	80	999	0	ENST00000298229.2:c.2629G>A	p.Glu877Lys	p.E877K	ENST00000298229	NM_001567.3	877	Gag/Aag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949125	71949125	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745724027		P-0022372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	83	905	1	ENST00000298229.2:c.3592G>A	p.Glu1198Lys	p.E1198K	ENST00000298229	NM_001567.3	1198	Gag/Aag																																																																															
FLT3	2322	MSKCC	GRCh37	13	28609656	28609656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	57	739	1	ENST00000241453.7:c.1573G>A	p.Glu525Lys	p.E525K	ENST00000241453	NM_004119.2	525	Gag/Aag																																																																															
NF1	4763	MSKCC	GRCh37	17	29652842	29652842	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	49	268	0	ENST00000358273.4:c.4843del	p.Thr1615LeufsTer9	p.T1615Lfs*9	ENST00000358273	NM_001042492.2	1614	Aaa/aa																																																																															
STAT3	6774	MSKCC	GRCh37	17	40477038	40477038	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	76	737	0	ENST00000264657.5:c.1407G>C	p.Gln469His	p.Q469H	ENST00000264657	NM_139276.2	469	caG/caC																																																																															
STAT3	6774	MSKCC	GRCh37	17	40478175	40478175	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	80	863	0	ENST00000264657.5:c.1324G>C	p.Glu442Gln	p.E442Q	ENST00000264657	NM_139276.2	442	Gag/Cag																																																																															
HGF	3082	MSKCC	GRCh37	7	81359074	81359074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1410083247		P-0022372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	89	522	0	ENST00000222390.5:c.887C>T	p.Thr296Ile	p.T296I	ENST00000222390	NM_000601.4	296	aCt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0022377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	438	681	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151851424	151851436	+	frameshift_variant	Frame_Shift_Del	DEL	ATGACAGATCTGG	ATGACAGATCTGG	-			P-0022377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	77	694	0	ENST00000262189.6:c.12055_12067del	p.Pro4019TrpfsTer60	p.P4019Wfs*60	ENST00000262189	NM_170606.2	4019	CCAGATCTGTCATtg/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863224683		P-0022420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	183	1222	2	ENST00000269305.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000269305	NM_001126112.2	130	Ctc/Ttc																																																																															
MPL	4352	MSKCC	GRCh37	1	43814532	43814532	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs895171793		P-0022420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	67	642	0	ENST00000372470.3:c.1327G>C	p.Gly443Arg	p.G443R	ENST00000372470	NM_005373.2	443	Ggg/Cgg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56390460	56390692	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCTTTTAGACAAGGGAGTATATGGTAAGATATTTATAATGTTTGTTTTTACAATTATCCATTATTCTTTTCATTATACAAGTTAGGTTAAGAATTGAAAATCAGATAAAGATAAGGTAAACATGTTGTTGAATGGAAGAGTTTTATTTTTCTTATTAAGATGATACATTTGATCTTCATTCCATCTGAATAACTAATTAGCTTCATGTCTTTACTTTTATGTTTCCTGTTTT	TCCTTTTAGACAAGGGAGTATATGGTAAGATATTTATAATGTTTGTTTTTACAATTATCCATTATTCTTTTCATTATACAAGTTAGGTTAAGAATTGAAAATCAGATAAAGATAAGGTAAACATGTTGTTGAATGGAAGAGTTTTATTTTTCTTATTAAGATGATACATTTGATCTTCATTCCATCTGAATAACTAATTAGCTTCATGTCTTTACTTTTATGTTTCCTGTTTT	-			P-0022420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	152	549	0	ENST00000348428.3:c.1199_1222+209del		p.X400_splice	ENST00000348428	NM_006785.3	400																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36212673	36212673	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1342415250		P-0022420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	32	1139	2	ENST00000222270.7:c.2424G>T	p.Gln808His	p.Q808H	ENST00000222270	NM_014727.1	808	caG/caT																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922669	44922670	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	245	197	0	ENST00000377967.4:c.1531dup	p.Arg511LysfsTer15	p.R511Kfs*15	ENST00000377967	NM_021140.2	510	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	483	729	2	ENST00000269305.4:c.542G>C	p.Arg181Pro	p.R181P	ENST00000269305	NM_001126112.2	181	cGc/cCc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95590816	95590816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	543	560	3	ENST00000343455.3:c.1093C>T	p.Pro365Ser	p.P365S	ENST00000343455	NM_177438.2	365	Cct/Tct																																																																															
NF2	4771	MSKCC	GRCh37	22	30050667	30050667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	135	600	1	ENST00000338641.4:c.469G>A	p.Val157Ile	p.V157I	ENST00000338641	NM_000268.3	157	Gtt/Att																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	83	318	0	ENST00000257430.4:c.3919dup	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0022456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	163	467	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
RET	5979	MSKCC	GRCh37	10	43595926	43595926	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2342	263	791	0	ENST00000355710.3:c.93C>G	p.Phe31Leu	p.F31L	ENST00000355710	NM_020975.4	31	ttC/ttG																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562493	21562493	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1417916199		P-0022456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	12	99	1	ENST00000382592.4:c.1426G>A	p.Ala476Thr	p.A476T	ENST00000382592	NM_014572.2	476	Gcc/Acc																																																																															
MGA	23269	MSKCC	GRCh37	15	42041546	42041546	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	221	745	0	ENST00000219905.7:c.5741G>T	p.Ser1914Ile	p.S1914I	ENST00000219905	NM_001164273.1	1914	aGt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	895	886	0	ENST00000269305.4:c.159del	p.Trp53CysfsTer70	p.W53Cfs*70	ENST00000269305	NM_001126112.2	53	tgG/tg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5240320	5240320	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1456886552		P-0022456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	331	796	1	ENST00000357368.4:c.1594C>T	p.Arg532Trp	p.R532W	ENST00000357368	NM_002850.3	532	Cgg/Tgg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225379420	225379420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	133	861	1	ENST00000264414.4:c.448C>A	p.Gln150Lys	p.Q150K	ENST00000264414	NM_003590.4	150	Caa/Aaa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57466808	57466822	+	inframe_deletion	In_Frame_Del	DEL	CGAGGACCAGCGCAA	CGAGGACCAGCGCAA	-			P-0022456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1333	117	369	1	ENST00000371085.3:c.33_47del	p.Asp11_Glu15del	p.D11_E15del	ENST00000371085	NM_000516.4	9	acCGAGGACCAGCGCAAc/acc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753960	57753960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	149	547	0	ENST00000274289.3:c.664G>T	p.Gly222Trp	p.G222W	ENST00000274289	NM_006622.3	222	Ggg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0022458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	74	671	2	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242478	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAG	AATTAAGAGAAG	CAC	rs727503015		P-0022458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	833	675	2	ENST00000275493.2:c.2237_2248delinsCAC	p.Glu746_Ala750delinsAlaPro	p.E746_A750delinsAP	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGca/gCACca																																																																															
NBN	4683	MSKCC	GRCh37	8	90955585	90955585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	62	499	0	ENST00000265433.3:c.2080C>T	p.Pro694Ser	p.P694S	ENST00000265433	NM_002485.4	694	Cct/Tct																																																																															
NBN	4683	MSKCC	GRCh37	8	90995077	90995077	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	47	479	0	ENST00000265433.3:c.44C>A	p.Pro15Gln	p.P15Q	ENST00000265433	NM_002485.4	15	cCa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916947	178916947	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	89	310	0	ENST00000263967.3:c.334A>T	p.Ile112Phe	p.I112F	ENST00000263967	NM_006218.2	112	Atc/Ttc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589623	67589634	+	inframe_deletion	In_Frame_Del	DEL	ATATGATAGATT	ATATGATAGATT	-			P-0022475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	73	269	0	ENST00000274335.5:c.1392_1403del	p.Asp464_Tyr467del	p.D464_Y467del	ENST00000274335		462	gaATATGATAGATTa/gaa																																																																															
MGA	23269	MSKCC	GRCh37	15	42005553	42005553	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	110	464	1	ENST00000219905.7:c.3289A>G	p.Lys1097Glu	p.K1097E	ENST00000219905	NM_001164273.1	1097	Aag/Gag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	341251	341251	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	102	652	0	ENST00000262320.3:c.2233G>C	p.Ala745Pro	p.A745P	ENST00000262320	NM_003502.3	745	Gcg/Ccg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615802	1615802	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	84	491	2	ENST00000344749.5:c.1469C>A	p.Ala490Asp	p.A490D	ENST00000344749	NM_001136139.2	490	gCc/gAc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12641857	12641906	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTGTTGGCTAAATGACTATGGAAAAGTACCTGATTCGCTGTGACTTCGA	ATTGTTGGCTAAATGACTATGGAAAAGTACCTGATTCGCTGTGACTTCGA	-			P-0022475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	94	213	0	ENST00000251849.4:c.843_862+30del		p.X281_splice	ENST00000251849	NM_002880.3	281																																																																																
CSF1R	1436	MSKCC	GRCh37	5	149453016	149453016	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	59	349	0	ENST00000286301.3:c.930C>G	p.Ile310Met	p.I310M	ENST00000286301	NM_005211.3	310	atC/atG																																																																															
TCEB1	6921	MSKCC	GRCh37	8	74868231	74868231	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	59	281	0	ENST00000518127.1:c.63G>C	p.Leu21Phe	p.L21F	ENST00000518127	NM_001204857.1	21	ttG/ttC																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871092	12871115	+	inframe_deletion	In_Frame_Del	DEL	CAGGATGTCAGCGGGAGCCGCCCG	CAGGATGTCAGCGGGAGCCGCCCG	-			P-0022475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	82	219	0	ENST00000228872.4:c.319_342del	p.Gln107_Pro114del	p.Q107_P114del	ENST00000228872	NM_004064.3	107	CAGGATGTCAGCGGGAGCCGCCCG/-																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98220339	98220339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772406487		P-0022482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	147	452	0	ENST00000331920.6:c.3124G>A	p.Val1042Met	p.V1042M	ENST00000331920	NM_000264.3	1042	Gtg/Atg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115262240	115262240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	231	565	0	ENST00000438362.2:c.2314C>T	p.Arg772Cys	p.R772C	ENST00000438362	NM_001242891.1	772	Cgc/Tgc																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22008901	22008901	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1588	318	876	0	ENST00000276925.6:c.52C>G	p.Leu18Val	p.L18V	ENST00000276925	NM_004936.3	18	Ctg/Gtg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914562	32914562	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	108	849	0	ENST00000380152.3:c.6070C>A	p.Gln2024Lys	p.Q2024K	ENST00000380152		2024	Cag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68847224	68847232	+	inframe_deletion	In_Frame_Del	DEL	TCAGGTGCC	TCAGGTGCC	-			P-0022521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	107	712	0	ENST00000261769.5:c.1147_1155del	p.Gln383_Pro385del	p.Q383_P385del	ENST00000261769	NM_004360.3	382	ggTCAGGTGCCt/ggt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881002	37881003	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTCCCCC			P-0022521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	197	1153	0	ENST00000269571.5:c.2339_2340insCGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	-/GGCTCCCCC																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171628	36171628	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	87	516	0	ENST00000300305.3:c.937del	p.Leu313SerfsTer15	p.L313Sfs*15	ENST00000300305		313	Ctc/tc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101048	27101048	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	74	954	1	ENST00000324856.7:c.4330G>T	p.Glu1444Ter	p.E1444*	ENST00000324856	NM_006015.4	1444	Gag/Tag																																																																															
CD79B	974	MSKCC	GRCh37	17	62006644	62006644	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	62	852	0	ENST00000392795.3:c.635T>C	p.Val212Ala	p.V212A	ENST00000392795	NM_001039933.1	212	gTg/gCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	300	798	0	ENST00000269305.4:c.838del	p.Arg280GlufsTer65	p.R280Efs*65	ENST00000269305	NM_001126112.2	280	Aga/ga																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44937723	44937723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	54	643	0	ENST00000377967.4:c.2911C>T	p.Arg971Cys	p.R971C	ENST00000377967	NM_021140.2	971	Cgt/Tgt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110046	115110046	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867049310		P-0022566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	119	906	0	ENST00000257566.3:c.1832C>T	p.Ala611Val	p.A611V	ENST00000257566	NM_016569.3	611	gCg/gTg																																																																															
CCND2	894	MSKCC	GRCh37	12	4385308	4385308	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	20	417	0	ENST00000261254.3:c.333A>C	p.Lys111Asn	p.K111N	ENST00000261254	NM_001759.3	111	aaA/aaC																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027730	48027730	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0022566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	71	435	0	ENST00000234420.5:c.2608A>T	p.Lys870Ter	p.K870*	ENST00000234420	NM_000179.2	870	Aaa/Taa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230655	46230949	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATGTTAAGCTCTTGGCAGCTAATCGTACCTGTCTTCGTTTCCTATTACTTTCTGCACATAGTCATTTTATTTCTTTAAGGCAATTAGGCCTTGACACATTAGGAAATATTGCAGCTGAGGTAAGCATGTGACTGTACCTTAAACTAGTTTTTATAGTTAGCAACATTTATGTTACAATTTTAGGATGTGGCATTTTATAGTTGCCATATTTATAGACTATTAAATGCTTACATGTATTAGTTGCTAAAAATGGTGATGTAGAAGTATCACATACTTTTATGGAAAAAAGTATTT	AATGTTAAGCTCTTGGCAGCTAATCGTACCTGTCTTCGTTTCCTATTACTTTCTGCACATAGTCATTTTATTTCTTTAAGGCAATTAGGCCTTGACACATTAGGAAATATTGCAGCTGAGGTAAGCATGTGACTGTACCTTAAACTAGTTTTTATAGTTAGCAACATTTATGTTACAATTTTAGGATGTGGCATTTTATAGTTGCCATATTTATAGACTATTAAATGCTTACATGTATTAGTTGCTAAAAATGGTGATGTAGAAGTATCACATACTTTTATGGAAAAAAGTATTT	-			P-0022569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	68	637	0	ENST00000334344.6:c.904_1024-155del		p.X302_splice	ENST00000334344	NM_152641.2	302																																																																																
GREM1	26585	MSKCC	GRCh37	15	33023329	33023337	+	inframe_deletion	In_Frame_Del	DEL	CAAGAAATT	CAAGAAATT	-			P-0022569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	73	979	0	ENST00000300177.4:c.440_448del	p.Lys147_Phe149del	p.K147_F149del	ENST00000300177	NM_001191322.1	146	ccCAAGAAATTc/ccc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56870591	56870591	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	148	644	0	ENST00000308159.5:c.1861C>A	p.Leu621Met	p.L621M	ENST00000308159	NM_014669.4	621	Ctg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578510	7578515	+	inframe_deletion	In_Frame_Del	DEL	GGTCTT	GGTCTT	-			P-0022569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	532	1055	0	ENST00000269305.4:c.415_420del	p.Lys139_Thr140del	p.K139_T140del	ENST00000269305	NM_001126112.2	139	AAGACC/-																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200161	128200161	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0022569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	188	740	1	ENST00000341105.2:c.1144G>T	p.Val382Phe	p.V382F	ENST00000341105	NM_032638.4	382	Gtt/Ttt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206658563	206658563	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	233	647	0	ENST00000367120.3:c.1536T>G	p.Asn512Lys	p.N512K	ENST00000367120	NM_014002.3	512	aaT/aaG																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061214	38061214	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	100	598	0	ENST00000250448.2:c.775T>A	p.Tyr259Asn	p.Y259N	ENST00000250448	NM_004496.3	259	Tac/Aac																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618626	37618627	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	303	784	0	ENST00000447079.4:c.302_303insT	p.Ser102IlefsTer25	p.S102Ifs*25	ENST00000447079	NM_015083.1	101	gga/ggTa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657501	37657501	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0022798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	232	579	0	ENST00000447079.4:c.2420-2A>G		p.X807_splice	ENST00000447079	NM_015083.1	807																																																																																
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0022800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	162	1081	1	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949125	71949125	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	66	879	0	ENST00000298229.2:c.3592G>C	p.Glu1198Gln	p.E1198Q	ENST00000298229	NM_001567.3	1198	Gag/Cag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118369196	118369196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	58	723	1	ENST00000534358.1:c.5914G>A	p.Asp1972Asn	p.D1972N	ENST00000534358	NM_005933.3	1972	Gat/Aat																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373923	118373923	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	31	525	0	ENST00000534358.1:c.7316C>G	p.Thr2439Ser	p.T2439S	ENST00000534358	NM_005933.3	2439	aCt/aGt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95597878	95597878	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs768445477		P-0022800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	70	924	0	ENST00000343455.3:c.406G>C	p.Glu136Gln	p.E136Q	ENST00000343455	NM_177438.2	136	Gag/Cag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686937	37686937	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	87	813	0	ENST00000447079.4:c.3841C>G	p.Leu1281Val	p.L1281V	ENST00000447079	NM_015083.1	1281	Ctg/Gtg																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804398	46804398	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1343659361		P-0022800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	71	641	1	ENST00000290295.7:c.609C>A	p.Ser203Arg	p.S203R	ENST00000290295	NM_006361.5	203	agC/agA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591966	48591966	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	29	565	0	ENST00000342988.3:c.1129G>T	p.Glu377Ter	p.E377*	ENST00000342988	NM_005359.5	377	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600475	10600475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	92	946	1	ENST00000171111.5:c.1380G>T	p.Arg460Ser	p.R460S	ENST00000171111	NM_203500.1	460	agG/agT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221474	36221474	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1280	104	1181	1	ENST00000222270.7:c.5233G>T	p.Asp1745Tyr	p.D1745Y	ENST00000222270	NM_014727.1	1745	Gat/Tat																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786892	135786892	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	77	780	0	ENST00000298552.3:c.977del	p.Leu326HisfsTer5	p.L326Hfs*5	ENST00000298552	NM_001162426.1	326	cTa/ca																																																																															
ATRX	546	MSKCC	GRCh37	X	76939639	76939639	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	74	536	0	ENST00000373344.5:c.1109A>G	p.Tyr370Cys	p.Y370C	ENST00000373344	NM_000489.3	370	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	368	723	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508946	106508946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	70	425	0	ENST00000359195.3:c.940G>A	p.Ala314Thr	p.A314T	ENST00000359195	NM_002649.2	314	Gcc/Acc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541475	187541475	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs76613365		P-0022996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	84	512	1	ENST00000441802.2:c.6265G>A	p.Val2089Ile	p.V2089I	ENST00000441802	NM_005245.3	2089	Gtt/Att																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372071	55372071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	188	539	0	ENST00000297316.4:c.761C>T	p.Ala254Val	p.A254V	ENST00000297316	NM_022454.3	254	gCg/gTg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981096	201981096	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	126	635	0	ENST00000359651.3:c.175T>A	p.Trp59Arg	p.W59R	ENST00000359651		59	Tgg/Agg																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73774929	73774929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	173	597	0	ENST00000254810.4:c.244G>A	p.Asp82Asn	p.D82N	ENST00000254810	NM_005324.3	82	Gac/Aac																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71090658	71090658	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	123	398	0	ENST00000318789.4:c.690G>T	p.Gln230His	p.Q230H	ENST00000318789	NM_032682.5	230	caG/caT																																																																															
MET	4233	MSKCC	GRCh37	7	116339367	116339367	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372320153		P-0022996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	69	454	0	ENST00000397752.3:c.229G>A	p.Asp77Asn	p.D77N	ENST00000397752	NM_000245.2	77	Gac/Aac																																																																															
SYK	6850	MSKCC	GRCh37	9	93641164	93641167	+	frameshift_variant	Frame_Shift_Del	DEL	ACCC	ACCC	-			P-0022996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	106	621	0	ENST00000375746.1:c.1511_1514del	p.Thr504AsnfsTer57	p.T504Nfs*57	ENST00000375746	NM_001174167.1	504	ACCCaa/aa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610468	10610468	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	129	819	0	ENST00000171111.5:c.242T>G	p.Leu81Arg	p.L81R	ENST00000171111	NM_203500.1	81	cTg/cGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0023031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	149	420	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0023031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	396	1067	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																															
CASP8	841	MSKCC	GRCh37	2	202137620	202137620	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0023031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	527	655	0	ENST00000358485.4:c.728-1G>C		p.X243_splice	ENST00000358485	NM_001080125.1	243																																																																																
ARAF	369	MSKCC	GRCh37	X	47426638	47426638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	62	747	0	ENST00000377045.4:c.883G>T	p.Gly295Trp	p.G295W	ENST00000377045	NM_001654.4	295	Ggg/Tgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912113	32912113	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0023031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	333	856	0	ENST00000380152.3:c.3621T>A	p.Tyr1207Ter	p.Y1207*	ENST00000380152		1207	taT/taA																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041923	14041923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	32	380	0	ENST00000311895.7:c.2470G>A	p.Asp824Asn	p.D824N	ENST00000311895	NM_005236.2	824	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578242	7578242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	110	771	0	ENST00000269305.4:c.607G>T	p.Val203Leu	p.V203L	ENST00000269305	NM_001126112.2	203	Gtg/Ttg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902419	1902420	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs1324457447		P-0023102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	170	778	0	ENST00000382895.3:c.40_41del	p.Ser14CysfsTer42	p.S14Cfs*42	ENST00000382895	NM_133330.2	13	cAG/c																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259516	+	missense_variant	Missense_Mutation	DNP	TG	TG	GT	rs1057519848		P-0023102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	2465	723	0	ENST00000275493.2:c.2573_2574delinsGT	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTG/cGT																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528335	157528335	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	41	900	0	ENST00000346085.5:c.6060G>C	p.Leu2020Phe	p.L2020F	ENST00000346085	NM_020732.3	2020	ttG/ttC																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602767	10602767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	42	930	3	ENST00000171111.5:c.811G>T	p.Val271Leu	p.V271L	ENST00000171111	NM_203500.1	271	Gtg/Ttg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728616	190728616	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	57	743	0	ENST00000441310.2:c.2004A>C	p.Leu668Phe	p.L668F	ENST00000441310	NM_000534.4	668	ttA/ttC																																																																															
ATR	545	MSKCC	GRCh37	3	142279214	142279214	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	47	841	0	ENST00000350721.4:c.1432G>T	p.Glu478Ter	p.E478*	ENST00000350721	NM_001184.3	478	Gaa/Taa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453118	140453118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	43	687	0	ENST00000288602.6:c.1817G>T	p.Gly606Val	p.G606V	ENST00000288602	NM_004333.4	606	gGg/gTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020414	69020414	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	66	893	0	ENST00000288368.4:c.2786A>C	p.His929Pro	p.H929P	ENST00000288368	NM_024870.2	929	cAc/cCc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141546	11141546	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1298515852		P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	196	953	0	ENST00000344626.4:c.3523G>A	p.Asp1175Asn	p.D1175N	ENST00000344626	NM_003072.3	1175	Gac/Aac																																																																															
CASP8	841	MSKCC	GRCh37	2	202151270	202151270	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	191	900	1	ENST00000358485.4:c.1570C>T	p.Gln524Ter	p.Q524*	ENST00000358485	NM_001080125.1	524	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1220394	1220394	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs730881972		P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	249	1011	0	ENST00000326873.7:c.487G>C	p.Gly163Arg	p.G163R	ENST00000326873	NM_000455.4	163	Ggc/Cgc																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770065	56770065	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752608224		P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	180	778	2	ENST00000337432.4:c.61C>T	p.Pro21Ser	p.P21S	ENST00000337432	NM_058216.2	21	Cca/Tca																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661663	227661664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761880048		P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	125	682	13	ENST00000305123.5:c.1791dup	p.His598AlafsTer13	p.H598Afs*13	ENST00000305123	NM_005544.2	597	-/G																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37876038	37876038	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	217	1064	0	ENST00000269571.5:c.1899-2A>G		p.X633_splice	ENST00000269571		633																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602939	10602939	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	239	1068	0	ENST00000171111.5:c.640-1G>T		p.X214_splice	ENST00000171111	NM_203500.1	214																																																																																
RB1	5925	MSKCC	GRCh37	13	48947596	48947596	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	110	756	0	ENST00000267163.4:c.1183C>G	p.Gln395Glu	p.Q395E	ENST00000267163	NM_000321.2	395	Caa/Gaa																																																																															
NF1	4763	MSKCC	GRCh37	17	29654796	29654796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	147	581	0	ENST00000358273.4:c.5548G>A	p.Val1850Ile	p.V1850I	ENST00000358273	NM_001042492.2	1850	Gtc/Atc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211749	2211749	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	219	1142	0	ENST00000398665.3:c.1466-1G>A		p.X489_splice	ENST00000398665	NM_032482.2	489																																																																																
CIC	23152	MSKCC	GRCh37	19	42791157	42791157	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	192	909	0	ENST00000575354.2:c.218-1G>C		p.X73_splice	ENST00000575354	NM_015125.3	73																																																																																
CIC	23152	MSKCC	GRCh37	19	42799167	42799167	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	200	1051	0	ENST00000575354.2:c.4651C>G	p.Pro1551Ala	p.P1551A	ENST00000575354	NM_015125.3	1551	Ccc/Gcc																																																																															
REL	5966	MSKCC	GRCh37	2	61144151	61144151	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	157	762	0	ENST00000295025.8:c.534C>G	p.Asn178Lys	p.N178K	ENST00000295025	NM_002908.2	178	aaC/aaG																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212495239	212495239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	155	920	0	ENST00000342788.4:c.2027G>A	p.Arg676Lys	p.R676K	ENST00000342788	NM_005235.2	676	aGa/aAa																																																																															
NF2	4771	MSKCC	GRCh37	22	30069270	30069270	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	371	829	1	ENST00000338641.4:c.1135G>T	p.Glu379Ter	p.E379*	ENST00000338641	NM_000268.3	379	Gag/Tag																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155359	185155359	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	158	651	0	ENST00000265026.3:c.600G>C	p.Gln200His	p.Q200H	ENST00000265026	NM_004721.4	200	caG/caC																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55153668	55153669	+	missense_variant	Missense_Mutation	DNP	CT	CT	AC			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	200	933	2	ENST00000257290.5:c.2634_2635delinsAC	p.Trp879Arg	p.W879R	ENST00000257290	NM_006206.4	878	gtCTgg/gtACgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152007146	152007146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	141	731	0	ENST00000262189.6:c.754C>T	p.His252Tyr	p.H252Y	ENST00000262189	NM_170606.2	252	Cat/Tat																																																																															
MED12	9968	MSKCC	GRCh37	X	70344020	70344025	+	inframe_deletion	In_Frame_Del	DEL	AGTGAG	AGTGAG	-			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	222	614	0	ENST00000374080.3:c.1762_1767del	p.Ser588_Glu589del	p.S588_E589del	ENST00000374080		586	AGTGAG/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	65	735	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0023215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	67	453	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944547	71944547	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	116	1019	1	ENST00000298229.2:c.2103del	p.His701GlnfsTer57	p.H701Qfs*57	ENST00000298229	NM_001567.3	701	caC/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25368383	25368383	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	85	537	0	ENST00000256078.4:c.562A>C	p.Ile188Leu	p.I188L	ENST00000256078	NM_033360.2	188	Ata/Cta																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016600	12016600	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	98	623	0	ENST00000353533.5:c.736T>C	p.Cys246Arg	p.C246R	ENST00000353533	NM_003010.3	246	Tgt/Cgt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210769	5210769	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770699501		P-0023215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	157	1073	1	ENST00000357368.4:c.5282C>T	p.Thr1761Met	p.T1761M	ENST00000357368	NM_002850.3	1761	aCg/aTg																																																																															
AXL	558	MSKCC	GRCh37	19	41748899	41748899	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750167315		P-0023215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	65	877	1	ENST00000301178.4:c.1424G>A	p.Arg475Gln	p.R475Q	ENST00000301178	NM_021913.4	475	cGa/cAa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61721038	61721038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	82	633	0	ENST00000401558.2:c.1236G>A	p.Met412Ile	p.M412I	ENST00000401558	NM_003400.3	412	atG/atA																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43772110	43772110	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756804341		P-0023273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	381	1023	1	ENST00000382044.4:c.605C>T	p.Ser202Leu	p.S202L	ENST00000382044	NM_001141980.1	202	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057520005		P-0023281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	125	837	0	ENST00000269305.4:c.820G>C	p.Val274Leu	p.V274L	ENST00000269305	NM_001126112.2	274	Gtt/Ctt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910884	114910896	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TAAGTGTTGCTGT	TAAGTGTTGCTGT	-			P-0023281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	77	619	0	ENST00000543371.1:c.1001+3_1001+15del		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9862844	9862844	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs74458073		P-0023281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	118	850	0	ENST00000330684.3:c.2459T>G	p.Val820Gly	p.V820G	ENST00000330684	NM_001134407.1	820	gTa/gGa																																																																															
ALK	238	MSKCC	GRCh37	2	29432691	29432691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	99	759	1	ENST00000389048.3:c.3797C>T	p.Ala1266Val	p.A1266V	ENST00000389048	NM_004304.4	1266	gCc/gTc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665372	138665372	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	137	855	1	ENST00000330315.3:c.193A>T	p.Met65Leu	p.M65L	ENST00000330315	NM_023067.3	65	Atg/Ttg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0023314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7012	243	539	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
CBFB	865	MSKCC	GRCh37	16	67063372	67063372	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	218	308	0	ENST00000412916.2:c.62T>G	p.Leu21Arg	p.L21R	ENST00000412916		21	cTg/cGg																																																																															
CDH1	999	MSKCC	GRCh37	16	68844175	68844175	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	306	592	0	ENST00000261769.5:c.763C>T	p.Gln255Ter	p.Q255*	ENST00000261769	NM_004360.3	255	Cag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117408	115117408	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	235	428	1	ENST00000257566.3:c.766del	p.Arg256GlufsTer6	p.R256Efs*6	ENST00000257566	NM_016569.3	256	Aga/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579865	7579868	+	frameshift_variant	Frame_Shift_Del	DEL	CTGA	CTGA	-			P-0023314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	287	581	1	ENST00000269305.4:c.45_48del	p.Ser15ArgfsTer28	p.S15Rfs*28	ENST00000269305	NM_001126112.2	15	agTCAG/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	354	1119	0	ENST00000269305.4:c.388del	p.Leu130SerfsTer40	p.L130Sfs*40	ENST00000269305	NM_001126112.2	130	Ctc/tc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602329	10602329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	175	1074	0	ENST00000171111.5:c.1249G>A	p.Gly417Arg	p.G417R	ENST00000171111	NM_203500.1	417	Ggg/Agg																																																																															
POLE	5426	MSKCC	GRCh37	12	133226049	133226049	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	145	912	5	ENST00000320574.5:c.3848C>A	p.Ala1283Asp	p.A1283D	ENST00000320574	NM_006231.2	1283	gCc/gAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350234	89350234	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	75	1101	2	ENST00000301030.4:c.2716C>T	p.Arg906Ter	p.R906*	ENST00000301030	NM_001256183.1	906	Cga/Tga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627730	37627730	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	346	1169	0	ENST00000447079.4:c.1649del	p.Pro550LeufsTer60	p.P550Lfs*60	ENST00000447079	NM_015083.1	549	Ccc/cc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610264	10610264	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	129	985	2	ENST00000171111.5:c.446A>T	p.Glu149Val	p.E149V	ENST00000171111	NM_203500.1	149	gAg/gTg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965421	18965421	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	108	540	2	ENST00000262803.5:c.1168G>T	p.Glu390Ter	p.E390*	ENST00000262803	NM_002911.3	390	Gag/Tag																																																																															
CUL3	8452	MSKCC	GRCh37	2	225422454	225422456	+	inframe_deletion	In_Frame_Del	DEL	ATA	ATA	-			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	112	969	0	ENST00000264414.4:c.184_186del	p.Tyr62del	p.Y62del	ENST00000264414	NM_003590.4	62	TAT/-																																																																															
AURKA	6790	MSKCC	GRCh37	20	54958055	54958055	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	89	484	0	ENST00000312783.6:c.552A>G	p.Ile184Met	p.I184M	ENST00000312783	NM_198436.1	184	atA/atG																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42843882	42843882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	88	838	1	ENST00000398585.3:c.1037C>A	p.Thr346Lys	p.T346K	ENST00000398585	NM_001135099.1	346	aCg/aAg																																																																															
ATR	545	MSKCC	GRCh37	3	142277511	142277511	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1278516813		P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	83	652	0	ENST00000350721.4:c.1840G>A	p.Ala614Thr	p.A614T	ENST00000350721	NM_001184.3	614	Gcc/Acc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950414	38950414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	124	759	0	ENST00000357387.3:c.3536G>A	p.Gly1179Glu	p.G1179E	ENST00000357387	NM_152756.3	1179	gGa/gAa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459432	50459432	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	58	422	0	ENST00000331340.3:c.721A>G	p.Lys241Glu	p.K241E	ENST00000331340	NM_006060.4	241	Aaa/Gaa																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29207387	29207387	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	79	648	0	ENST00000240100.2:c.409C>A	p.Arg137Ser	p.R137S	ENST00000240100	NM_001394.6	137	Cgc/Agc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371820	55371820	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1180015365		P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	17	138	0	ENST00000297316.4:c.510G>C	p.Glu170Asp	p.E170D	ENST00000297316	NM_022454.3	170	gaG/gaC																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44870205	44870205	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	47	470	0	ENST00000377967.4:c.385-1G>C		p.X129_splice	ENST00000377967	NM_021140.2	129																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971185	21971185	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	289	662	0	ENST00000304494.5:c.173G>C	p.Arg58Pro	p.R58P	ENST00000304494	NM_000077.4	58	cGa/cCa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971185	21971185	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AG			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	275	662	0	ENST00000304494.5:c.173delinsCT	p.Arg58ProfsTer62	p.R58Pfs*62	ENST00000304494	NM_000077.4	58	cGa/cCTa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230530	46230530	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	58	526	0	ENST00000334344.6:c.779del	p.Thr260AsnfsTer32	p.T260Nfs*32	ENST00000334344	NM_152641.2	260	aCa/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	149	972	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579314	7579314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G	rs1057520003		P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	55	730	0	ENST00000269305.4:c.373A>C	p.Thr125Pro	p.T125P	ENST00000269305	NM_001126112.2	125	Acg/Ccg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220394	1220395	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	47	895	2	ENST00000326873.7:c.487_488delinsTT	p.Gly163Phe	p.G163F	ENST00000326873	NM_000455.4	163	GGc/TTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272213	15272213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	68	809	2	ENST00000263388.2:c.6226G>T	p.Gly2076Trp	p.G2076W	ENST00000263388	NM_000435.2	2076	Ggg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584776	48584779	+	frameshift_variant	Frame_Shift_Del	DEL	ACGG	ACGG	CCT			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	70	746	1	ENST00000342988.3:c.854_857delinsCCT	p.Asn285ThrfsTer51	p.N285Tfs*51	ENST00000342988	NM_005359.5	285	aACGGc/aCCTc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1650225	1650225	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	84	1004	0	ENST00000344749.5:c.23C>G	p.Ala8Gly	p.A8G	ENST00000344749	NM_001136139.2	8	gCg/gGg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45860941	45860941	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	74	1006	0	ENST00000391945.4:c.1254C>G	p.Ile418Met	p.I418M	ENST00000391945	NM_000400.3	418	atC/atG																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391057	89391057	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	75	887	0	ENST00000336596.2:c.1123C>G	p.Pro375Ala	p.P375A	ENST00000336596	NM_005233.5	375	Cca/Gca																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134825409	134825409	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	55	849	1	ENST00000398015.3:c.925C>T	p.Arg309Ter	p.R309*	ENST00000398015	NM_004441.4	309	Cga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356169	66356169	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	70	813	0	ENST00000273854.3:c.1328C>G	p.Ala443Gly	p.A443G	ENST00000273854	NM_004439.5	443	gCa/gGa																																																																															
APC	324	MSKCC	GRCh37	5	112170702	112170702	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	39	810	0	ENST00000257430.4:c.1798A>T	p.Thr600Ser	p.T600S	ENST00000257430	NM_000038.5	600	Act/Tct																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149501544	149501544	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	66	809	0	ENST00000261799.4:c.2243C>G	p.Ser748Trp	p.S748W	ENST00000261799	NM_002609.3	748	tCg/tGg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911075	29911075	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	54	955	3	ENST00000376809.5:c.374G>T	p.Cys125Phe	p.C125F	ENST00000376809	NM_002116.7	125	tGc/tTc																																																																															
HGF	3082	MSKCC	GRCh37	7	81346547	81346547	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	44	468	0	ENST00000222390.5:c.1405+1G>T		p.X469_splice	ENST00000222390	NM_000601.4	469																																																																																
NBN	4683	MSKCC	GRCh37	8	90976658	90976659	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	45	820	2	ENST00000265433.3:c.973_974delinsAT	p.Pro325Ile	p.P325I	ENST00000265433	NM_002485.4	325	CCt/ATt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0023532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	617	983	2	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981767	201981767	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0023532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	307	946	0	ENST00000359651.3:c.479-1G>C		p.X160_splice	ENST00000359651		160																																																																																
FGFR2	2263	MSKCC	GRCh37	10	123274777	123274777	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs387906678		P-0023532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	266	934	0	ENST00000358487.5:c.1141T>C	p.Tyr381His	p.Y381H	ENST00000358487	NM_000141.4	381	Tac/Cac																																																																															
ETV6	2120	MSKCC	GRCh37	12	11992188	11992188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	522	773	0	ENST00000396373.4:c.278C>T	p.Ala93Val	p.A93V	ENST00000396373	NM_001987.4	93	gCt/gTt																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882091	36882091	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	251	997	0	ENST00000358127.4:c.922G>T	p.Ala308Ser	p.A308S	ENST00000358127	NM_001280556.1	308	Gcg/Tcg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87356827	87356827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	143	790	0	ENST00000277120.3:c.1180G>T	p.Asp394Tyr	p.D394Y	ENST00000277120		394	Gat/Tat																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128321993	128321993	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	314	958	2	ENST00000265960.3:c.767A>G	p.Lys256Arg	p.K256R	ENST00000265960	NM_001006617.1	256	aAg/aGg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412228	139412228	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	378	1111	0	ENST00000277541.6:c.1417G>T	p.Glu473Ter	p.E473*	ENST00000277541	NM_017617.3	473	Gag/Tag																																																																															
MED12	9968	MSKCC	GRCh37	X	70342400	70342401	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	318	523	0	ENST00000374080.3:c.1295dup	p.Gln433ThrfsTer4	p.Q433Tfs*4	ENST00000374080		431	cgg/cGgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0023586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	45	732	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29665728	29665728	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	65	341	0	ENST00000358273.4:c.6826G>T	p.Glu2276Ter	p.E2276*	ENST00000358273	NM_001042492.2	2276	Gag/Tag																																																																															
MYD88	4615	MSKCC	GRCh37	3	38181953	38181953	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201772694		P-0023586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	40	622	1	ENST00000396334.3:c.577C>T	p.Arg193Trp	p.R193W	ENST00000396334	NM_002468.4	193	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971205	21971217	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACCTGCCAGAGA	GACCTGCCAGAGA	-			P-0023586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	38	578	0	ENST00000304494.5:c.151-10_153del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0023588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	118	883	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	126	712	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175751	112175752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	68	511	1	ENST00000257430.4:c.4463dup	p.Leu1488PhefsTer26	p.L1488Ffs*26	ENST00000257430	NM_000038.5	1487	act/acTt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395686	45395686	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	113	739	2	ENST00000262160.6:c.448G>T	p.Glu150Ter	p.E150*	ENST00000262160	NM_005901.5	150	Gaa/Taa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127460	55127460	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779332376		P-0023588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	100	934	3	ENST00000257290.5:c.248C>T	p.Thr83Met	p.T83M	ENST00000257290	NM_006206.4	83	aCg/aTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519841		P-0023629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	10	383	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518215	187518215	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781295226		P-0023707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	74	369	0	ENST00000441802.2:c.12479G>A	p.Arg4160His	p.R4160H	ENST00000441802	NM_005245.3	4160	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	52	693	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
STAG2	10735	MSKCC	GRCh37	X	123199792	123199792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	61	548	0	ENST00000218089.9:c.2092C>T	p.His698Tyr	p.H698Y	ENST00000218089	NM_001042749.1	698	Cat/Tat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	71	523	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
HLA-B	3106	MSKCC	GRCh37	6	31324205	31324205	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs281864615		P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	137	529	1	ENST00000412585.2:c.358C>T	p.Gln120Ter	p.Q120*	ENST00000412585	NM_005514.6	120	Cag/Tag																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72076799	72076799	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs778071072		P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	97	587	2	ENST00000357731.5:c.698G>T	p.Gly233Val	p.G233V	ENST00000357731	NM_173808.2	233	gGc/gTc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120508073	120508074	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	49	416	0	ENST00000256646.2:c.1681+2dup		p.X561_splice	ENST00000256646	NM_024408.3	561																																																																																
WT1	7490	MSKCC	GRCh37	11	32438069	32438069	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	60	712	0	ENST00000332351.3:c.968C>A	p.Ser323Tyr	p.S323Y	ENST00000332351	NM_024426.4	323	tCc/tAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944157	71944157	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	42	782	0	ENST00000298229.2:c.1990G>C	p.Glu664Gln	p.E664Q	ENST00000298229	NM_001567.3	664	Gag/Cag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118368773	118368773	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	55	483	0	ENST00000534358.1:c.5787C>G	p.Ile1929Met	p.I1929M	ENST00000534358	NM_005933.3	1929	atC/atG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427144	49427144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	63	795	0	ENST00000301067.7:c.11344del	p.His3782ThrfsTer48	p.H3782Tfs*48	ENST00000301067	NM_003482.3	3782	Cac/ac																																																																															
SETD8	387893	MSKCC	GRCh37	12	123879617	123879617	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	37	429	0	ENST00000330479.4:c.313G>T	p.Val105Leu	p.V105L	ENST00000330479	NM_020382.3	105	Gta/Tta																																																																															
MGA	23269	MSKCC	GRCh37	15	42052679	42052679	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	44	737	0	ENST00000219905.7:c.7350G>C	p.Leu2450Phe	p.L2450F	ENST00000219905	NM_001164273.1	2450	ttG/ttC																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56780619	56780619	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137947462		P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	52	792	2	ENST00000337432.4:c.634C>T	p.Arg212Cys	p.R212C	ENST00000337432	NM_058216.2	212	Cgc/Tgc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554684	63554684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	55	516	0	ENST00000307078.5:c.55G>A	p.Glu19Lys	p.E19K	ENST00000307078	NM_004655.3	19	Gag/Aag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285108	15285108	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	57	869	1	ENST00000263388.2:c.4507G>T	p.Glu1503Ter	p.E1503*	ENST00000263388	NM_000435.2	1503	Gag/Tag																																																																															
MSH2	4436	MSKCC	GRCh37	2	47705565	47705565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	30	488	0	ENST00000233146.2:c.2365G>A	p.Ala789Thr	p.A789T	ENST00000233146	NM_000251.2	789	Gcc/Acc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628403	187628403	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	121	913	0	ENST00000441802.2:c.2579C>G	p.Ser860Ter	p.S860*	ENST00000441802	NM_005245.3	860	tCa/tGa																																																																															
TERT	7015	MSKCC	GRCh37	5	1255446	1255446	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	104	912	0	ENST00000310581.5:c.3113A>G	p.Asp1038Gly	p.D1038G	ENST00000310581	NM_198253.2	1038	gAc/gGc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38958573	38958573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	42	355	0	ENST00000357387.3:c.2392G>A	p.Gly798Arg	p.G798R	ENST00000357387	NM_152756.3	798	Gga/Aga																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683683	162683683	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377591051		P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	48	619	0	ENST00000366898.1:c.286G>A	p.Glu96Lys	p.E96K	ENST00000366898	NM_004562.2	96	Gag/Aag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389387	8389387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	70	542	0	ENST00000356435.5:c.4231G>T	p.Val1411Leu	p.V1411L	ENST00000356435		1411	Gtg/Ttg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417598	139417598	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	71	1046	0	ENST00000277541.6:c.446G>C	p.Cys149Ser	p.C149S	ENST00000277541	NM_017617.3	149	tGc/tCc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650499	48650499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	74	1067	0	ENST00000376670.3:c.469C>A	p.Pro157Thr	p.P157T	ENST00000376670	NM_002049.3	157	Cct/Act																																																																															
AR	367	MSKCC	GRCh37	X	66766483	66766483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	77	639	0	ENST00000374690.3:c.1495G>A	p.Ala499Thr	p.A499T	ENST00000374690	NM_000044.3	499	Gca/Aca																																																																															
AR	367	MSKCC	GRCh37	X	66941733	66941733	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	44	813	0	ENST00000374690.3:c.2377C>G	p.Gln793Glu	p.Q793E	ENST00000374690	NM_000044.3	793	Caa/Gaa																																																																															
IL10	3586	MSKCC	GRCh37	1	206944256	206944256	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374619208		P-0023741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	87	383	4	ENST00000423557.1:c.374G>A	p.Arg125His	p.R125H	ENST00000423557	NM_000572.2	125	cGc/cAc																																																																															
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs864622007		P-0023741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1317	159	295	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																															
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137852581		P-0023741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	873	234	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																															
NF1	4763	MSKCC	GRCh37	17	29554278	29554278	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199474777		P-0023741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	137	530	0	ENST00000358273.4:c.2294G>A	p.Arg765His	p.R765H	ENST00000358273	NM_001042492.2	765	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	181	668	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949157	151949157	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	145	565	0	ENST00000262189.6:c.1488T>A	p.Cys496Ter	p.C496*	ENST00000262189	NM_170606.2	496	tgT/tgA																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484285	8484286	+	missense_variant	Missense_Mutation	DNP	AT	AT	TC			P-0023741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	148	520	0	ENST00000356435.5:c.3246_3247delinsGA	p.Phe1083Ile	p.F1083I	ENST00000356435		1082	tcATtt/tcGAtt																																																																															
RB1	5925	MSKCC	GRCh37	13	48954196	48954198	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0023771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	50	238	0	ENST00000267163.4:c.1397_1399del	p.Glu466_Arg467delinsGly	p.E466_R467delinsG	ENST00000267163	NM_000321.2	466	gAACga/gga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577052	7577053	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0023771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	255	478	0	ENST00000269305.4:c.885_886del	p.His296ProfsTer9	p.H296Pfs*9	ENST00000269305	NM_001126112.2	295	ccTCac/ccac																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372094	55372094	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1041891434		P-0023771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	239	281	0	ENST00000297316.4:c.784C>T	p.Pro262Ser	p.P262S	ENST00000297316	NM_022454.3	262	Ccc/Tcc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0023776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	33	268	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176330	24176330	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1057517825		P-0023776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	74	440	0	ENST00000263121.7:c.1121G>A	p.Arg374Gln	p.R374Q	ENST00000263121	NM_003073.3	374	cGg/cAg																																																																															
CIC	23152	MSKCC	GRCh37	19	42791393	42791393	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0023776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	125	508	0	ENST00000575354.2:c.452+1G>A		p.X151_splice	ENST00000575354	NM_015125.3	151																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151874713	151874713	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	77	357	1	ENST00000262189.6:c.7825C>T	p.Arg2609Ter	p.R2609*	ENST00000262189	NM_170606.2	2609	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578448	7578455	+	frameshift_variant	Frame_Shift_Del	DEL	GCCATGGC	GCCATGGC	-			P-0023776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	83	453	0	ENST00000269305.4:c.475_482del	p.Ala159HisfsTer19	p.A159Hfs*19	ENST00000269305	NM_001126112.2	159	GCCATGGCc/c																																																																															
CIC	23152	MSKCC	GRCh37	19	42798357	42798357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	46	452	0	ENST00000575354.2:c.4228C>T	p.Pro1410Ser	p.P1410S	ENST00000575354	NM_015125.3	1410	Ccc/Tcc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661632	227661632	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893642		P-0023776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	107	408	0	ENST00000305123.5:c.1823C>T	p.Thr608Met	p.T608M	ENST00000305123	NM_005544.2	608	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112111374	112111374	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1060503328		P-0023776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	31	242	0	ENST00000257430.4:c.471G>A	p.Trp157Ter	p.W157*	ENST00000257430	NM_000038.5	157	tgG/tgA																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	148	282	1	ENST00000206249.3:c.1607T>A	p.Leu536His	p.L536H	ENST00000206249	NM_000125.3	536	cTc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	142	314	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs879499034		P-0023835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	135	239	0	ENST00000250448.2:c.798C>A	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938922	178938922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	109	291	0	ENST00000263967.3:c.2164G>A	p.Glu722Lys	p.E722K	ENST00000263967	NM_006218.2	722	Gag/Aag																																																																															
NUF2	83540	MSKCC	GRCh37	1	163317627	163317627	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	134	332	0	ENST00000271452.3:c.1023C>G	p.Phe341Leu	p.F341L	ENST00000271452	NM_145697.2	341	ttC/ttG																																																																															
CDH1	999	MSKCC	GRCh37	16	68849649	68849649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	133	287	0	ENST00000261769.5:c.1552G>T	p.Glu518Ter	p.E518*	ENST00000261769	NM_004360.3	518	Gaa/Taa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125593	47125593	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	94	211	0	ENST00000409792.3:c.5677del	p.Ile1893SerfsTer8	p.I1893Sfs*8	ENST00000409792	NM_014159.6	1893	Atc/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0023899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	127	513	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31389095	31389095	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756558325		P-0023899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	39	360	0	ENST00000328111.2:c.2008C>T	p.Arg670Trp	p.R670W	ENST00000328111	NM_006892.3	670	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0023910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	124	454	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445007	89445007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	35	420	0	ENST00000336596.2:c.1327A>G	p.Ile443Val	p.I443V	ENST00000336596	NM_005233.5	443	Att/Gtt																																																																															
TERT	7015	MSKCC	GRCh37	5	1280314	1280314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	65	600	0	ENST00000310581.5:c.1909G>A	p.Asp637Asn	p.D637N	ENST00000310581	NM_198253.2	637	Gac/Aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259442	55259442	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs397517127		P-0023910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	34	283	0	ENST00000275493.2:c.2500G>C	p.Val834Leu	p.V834L	ENST00000275493	NM_005228.3	834	Gtg/Ctg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039380	47039380	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	87	495	1	ENST00000329236.7:c.772A>T	p.Lys258Ter	p.K258*	ENST00000329236	NM_001204466.1	258	Aag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0023926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	328	891	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
FLT1	2321	MSKCC	GRCh37	13	28959118	28959118	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	206	618	0	ENST00000282397.4:c.2020A>G	p.Ile674Val	p.I674V	ENST00000282397	NM_002019.4	674	Atc/Gtc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32931887	32931888	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0023926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	102	598	0	ENST00000380152.3:c.7626_7627del	p.Tyr2543TrpfsTer4	p.Y2543Wfs*4	ENST00000380152		2542	acGTat/acat																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2636706	2636706	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	147	688	2	ENST00000342085.4:c.1155C>G	p.Cys385Trp	p.C385W	ENST00000342085	NM_002613.4	385	tgC/tgG																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59821817	59821817	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	151	822	0	ENST00000259008.2:c.2233G>C	p.Ala745Pro	p.A745P	ENST00000259008	NM_032043.2	745	Gca/Cca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971053	21971053	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs137854598		P-0023926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	100	590	0	ENST00000304494.5:c.305C>A	p.Ala102Glu	p.A102E	ENST00000304494	NM_000077.4	102	gCg/gAg																																																																															
CASP8	841	MSKCC	GRCh37	2	202150004	202150004	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	378	910	0	ENST00000358485.4:c.1445A>T	p.Gln482Leu	p.Q482L	ENST00000358485	NM_001080125.1	482	cAg/cTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223483	53223488	+	inframe_deletion	In_Frame_Del	DEL	GGCGCG	GGCGCG	-			P-0023961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	129	385	0	ENST00000375401.3:c.3871_3876del	p.Ala1292_Arg1293del	p.A1292_R1293del	ENST00000375401	NM_004187.3	1291	CGCGCC/-																																																																															
RXRA	6256	MSKCC	GRCh37	9	137328377	137328382	+	missense_variant	Missense_Mutation	ONP	CTCTTC	CTCTTC	ATCTTG			P-0023961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1595	390	1127	2	ENST00000481739.1:c.1306_1311delinsATCTTG	p.Leu436_Phe437delinsIleLeu	p.L436_F437delinsIL	ENST00000481739	NM_002957.4	436	CTCTTC/ATCTTG																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216753	7216753	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs745671551		P-0024097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	51	525	0	ENST00000380728.2:c.670C>T	p.Gln224Ter	p.Q224*	ENST00000380728		224	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574005	7574006	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	ACATCTCGAAGCGCTCACGCCC			P-0024097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	67	817	2	ENST00000269305.4:c.1000_1021dup	p.Phe341TrpfsTer3	p.F341Wfs*3	ENST00000269305	NM_001126112.2	341	ttc/tGGGCGTGAGCGCTTCGAGATGTtc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151856047	151856049	+	missense_variant	Missense_Mutation	ONP	CGT	CGT	AGA			P-0024097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	28	620	0	ENST00000262189.6:c.11569_11571delinsTCT	p.Thr3857Ser	p.T3857S	ENST00000262189	NM_170606.2	3857	ACG/TCT																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969953	81969953	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	238	564	0	ENST00000359376.3:c.3022C>T	p.Gln1008Ter	p.Q1008*	ENST00000359376	NM_002661.3	1008	Cag/Tag																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175957451	175957452	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0024108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	282	690	1	ENST00000367669.3:c.1944_1945delinsTT	p.Ala649Ser	p.A649S	ENST00000367669	NM_022457.5	648	ctGGct/ctTTct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	287	850	0	ENST00000269305.4:c.734del	p.Gly245AlafsTer2	p.G245Afs*2	ENST00000269305	NM_001126112.2	245	gGc/gc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207059	1208081	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGATGGGGGACCTGCTGGGGGAAGGCTCTTACGGCAAGGTGAAGGAGGTGCTGGACTCGGAGACGCTGTGCAGGAGGGCCGTCAAGATCCTCAAGAAGAAGAAGTTGCGAAGGATCCCCAACGGGGAGGCCAACGTGAAGAAGTAAGTATGGCTTGCTGGGGTCGGGGCCGGGCCGGGCCAGTCACGGTGCTGATGGTTCTGTCTTCCTTCCTTCTCTCCTCCCTCCCTCCCTTACTTCCTCTTAACACCCTGAGCTGGACCCGTCTGGCGCCTGTGTCCTCCGTGCCAGGGAGAGCGTGGTTGGGGGCCTGCGTTACGGACTTTCACTCAGGCAAGGCCAGTTGTCGCAGCGGGGCGTGCGTTTGCATGGGCTCTTGGACTCCAGTTAAAATGCCCTGGTAGCGAAACCCTCCTGAGAAGGGAGCGGCCCCCAATCCCCTAAGACTAGCCCCTTGGCTCCCCCAGCTGTCCAAGGAGCAGAGGCGCCCAGTGGAATCAGCCTGTGTTTGTTTGGGCCCCGAGAGTTTGTGTGCGGCCGCCAACACGTTTTCTGCGCAGTGTGTGGCCGTTACCGGGGCCAGGCGAAATGTGATTTGTTTATCCTGTCAGAGGGGAACCCTGGGCTGCCAAAAATAACTGTTTGCACCGGCTTATCAGTCAGCAGGAGGGAAACGTAGCCTTTCCTCATTTGCCAGGGATGTGACGCTGGAAGCATCCCTGGCCCCCGGGGCTGGAAGCCCTGCCCGAGGGGGACTGTGCCTCCCTCCCGAATTGCATCCGGAAGACCTTACTTTTCCAACTGACTTCTTCAGGCACGGGGCTGCCGCTGGGCATCCCGGACGCCTCTGCATCTGTGCGCGGAGAAGCTCCTACCTAGGGCAGCACTGGCCGGCCTGAGCCTCTCCCAGCTGGTGGGGGTGGCCGGGGGTGTCCCTGCCTTATCGCAGCCAGACACGCTGCACCTGCCGCCGCCTGGCGGGCCCTGCCCAGGCCCTGCTCCTTTCCCAGCCTTCTTAACTT	CCTGATGGGGGACCTGCTGGGGGAAGGCTCTTACGGCAAGGTGAAGGAGGTGCTGGACTCGGAGACGCTGTGCAGGAGGGCCGTCAAGATCCTCAAGAAGAAGAAGTTGCGAAGGATCCCCAACGGGGAGGCCAACGTGAAGAAGTAAGTATGGCTTGCTGGGGTCGGGGCCGGGCCGGGCCAGTCACGGTGCTGATGGTTCTGTCTTCCTTCCTTCTCTCCTCCCTCCCTCCCTTACTTCCTCTTAACACCCTGAGCTGGACCCGTCTGGCGCCTGTGTCCTCCGTGCCAGGGAGAGCGTGGTTGGGGGCCTGCGTTACGGACTTTCACTCAGGCAAGGCCAGTTGTCGCAGCGGGGCGTGCGTTTGCATGGGCTCTTGGACTCCAGTTAAAATGCCCTGGTAGCGAAACCCTCCTGAGAAGGGAGCGGCCCCCAATCCCCTAAGACTAGCCCCTTGGCTCCCCCAGCTGTCCAAGGAGCAGAGGCGCCCAGTGGAATCAGCCTGTGTTTGTTTGGGCCCCGAGAGTTTGTGTGCGGCCGCCAACACGTTTTCTGCGCAGTGTGTGGCCGTTACCGGGGCCAGGCGAAATGTGATTTGTTTATCCTGTCAGAGGGGAACCCTGGGCTGCCAAAAATAACTGTTTGCACCGGCTTATCAGTCAGCAGGAGGGAAACGTAGCCTTTCCTCATTTGCCAGGGATGTGACGCTGGAAGCATCCCTGGCCCCCGGGGCTGGAAGCCCTGCCCGAGGGGGACTGTGCCTCCCTCCCGAATTGCATCCGGAAGACCTTACTTTTCCAACTGACTTCTTCAGGCACGGGGCTGCCGCTGGGCATCCCGGACGCCTCTGCATCTGTGCGCGGAGAAGCTCCTACCTAGGGCAGCACTGGCCGGCCTGAGCCTCTCCCAGCTGGTGGGGGTGGCCGGGGGTGTCCCTGCCTTATCGCAGCCAGACACGCTGCACCTGCCGCCGCCTGGCGGGCCCTGCCCAGGCCCTGCTCCTTTCCCAGCCTTCTTAACTT	-			P-0024108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	311	863	0	ENST00000326873.7:c.147_290+879del		p.X49_splice	ENST00000326873	NM_000455.4	49																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5238932	5238932	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0024108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	99	222	0	ENST00000357368.4:c.1847C>A	p.Ser616Tyr	p.S616Y	ENST00000357368	NM_002850.3	616	tCc/tAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597401	10597401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	384	985	1	ENST00000171111.5:c.1802G>A	p.Arg601Gln	p.R601Q	ENST00000171111	NM_203500.1	601	cGg/cAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410000	139410000	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369522885		P-0024108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	271	758	1	ENST00000277541.6:c.1838G>A	p.Arg613His	p.R613H	ENST00000277541	NM_017617.3	613	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952146	178952147	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	12	502	0	ENST00000263967.3:c.3203dup	p.Asn1068LysfsTer5	p.N1068Kfs*5	ENST00000263967	NM_006218.2	1067	-/A																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484218	8484218	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	44	536	2	ENST00000356435.5:c.3314C>A	p.Pro1105Gln	p.P1105Q	ENST00000356435		1105	cCa/cAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0024178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	859	578	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0024178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	217	651	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44896902	44896902	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0024178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	35	648	0	ENST00000377967.4:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000377967	NM_021140.2	208	Caa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101699	27101699	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1286058909		P-0024178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	42	760	0	ENST00000324856.7:c.4981A>G	p.Met1661Val	p.M1661V	ENST00000324856	NM_006015.4	1661	Atg/Gtg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78599506	78599506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	64	497	0	ENST00000306801.3:c.178G>A	p.Val60Ile	p.V60I	ENST00000306801	NM_020761.2	60	Gtt/Att																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46267862	46267862	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773852491		P-0024178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	66	650	0	ENST00000371998.3:c.2623G>A	p.Ala875Thr	p.A875T	ENST00000371998		875	Gct/Act																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468251	50468251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	413	610	0	ENST00000331340.3:c.1486G>T	p.Gly496Cys	p.G496C	ENST00000331340	NM_006060.4	496	Ggc/Tgc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412344	63412344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	98	686	0	ENST00000330258.3:c.823G>C	p.Ala275Pro	p.A275P	ENST00000330258	NM_152424.3	275	Gcc/Ccc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579357	7579358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGAAAC	rs1131691004		P-0024183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	47	767	0	ENST00000269305.4:c.323_329dup	p.Leu111PhefsTer40	p.L111Ffs*40	ENST00000269305	NM_001126112.2	110	cgt/cgGTTTCCGt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251977	153251978	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TTTATTAC			P-0024183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	58	731	0	ENST00000281708.4:c.1021_1028dup	p.Pro344Ter	p.P344*	ENST00000281708	NM_033632.3	343	aaa/aaGTAATAAAa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	39	657	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	99	724	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
RB1	5925	MSKCC	GRCh37	13	48955419	48955419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	260	528	1	ENST00000267163.4:c.1535T>A	p.Leu512Ter	p.L512*	ENST00000267163	NM_000321.2	512	tTg/tAg																																																																															
RB1	5925	MSKCC	GRCh37	13	48916843	48916843	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	54	540	0	ENST00000267163.4:c.373G>T	p.Glu125Ter	p.E125*	ENST00000267163	NM_000321.2	125	Gaa/Taa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038831	47038831	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	478	971	1	ENST00000329236.7:c.607G>T	p.Gly203Ter	p.G203*	ENST00000329236	NM_001204466.1	203	Gga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480396	89480396	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs369276620		P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	26	382	0	ENST00000336596.2:c.2233C>T	p.Arg745Ter	p.R745*	ENST00000336596	NM_005233.5	745	Cga/Tga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098419	11098419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	60	683	0	ENST00000344626.4:c.937C>T	p.Pro313Ser	p.P313S	ENST00000344626	NM_003072.3	313	Ccc/Tcc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410310	63410310	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374610712		P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	255	911	1	ENST00000330258.3:c.2857C>T	p.Pro953Ser	p.P953S	ENST00000330258	NM_152424.3	953	Cca/Tca																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156834145	156834145	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	231	895	1	ENST00000524377.1:c.213-1G>T		p.X71_splice	ENST00000524377	NM_002529.3	71																																																																																
DDR2	4921	MSKCC	GRCh37	1	162725507	162725507	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773159664		P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	348	710	0	ENST00000367921.3:c.619G>A	p.Gly207Ser	p.G207S	ENST00000367921	NM_006182.2	207	Ggt/Agt																																																																															
CBL	867	MSKCC	GRCh37	11	119148875	119148876	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	185	323	0	ENST00000264033.4:c.1096-1_1096delinsTT		p.X366_splice	ENST00000264033	NM_005188.3	366																																																																																
POLE	5426	MSKCC	GRCh37	12	133250160	133250161	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	109	616	1	ENST00000320574.5:c.1359_1359+1delinsTT		p.X453_splice	ENST00000320574	NM_006231.2	453																																																																																
FLT3	2322	MSKCC	GRCh37	13	28626681	28626681	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	65	503	0	ENST00000241453.7:c.614+1G>T		p.X205_splice	ENST00000241453	NM_004119.2	205																																																																																
IRS2	8660	MSKCC	GRCh37	13	110436248	110436248	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	199	419	0	ENST00000375856.3:c.2153G>C	p.Arg718Thr	p.R718T	ENST00000375856	NM_003749.2	718	aGg/aCg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422175	81422175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	39	603	1	ENST00000298171.2:c.151C>T	p.Pro51Ser	p.P51S	ENST00000298171	NM_000369.2	51	Ccg/Tcg																																																																															
MGA	23269	MSKCC	GRCh37	15	41989067	41989067	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	110	708	0	ENST00000219905.7:c.1859T>A	p.Leu620Ter	p.L620*	ENST00000219905	NM_001164273.1	620	tTg/tAg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857306	9857306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	83	622	1	ENST00000330684.3:c.4095C>A	p.Asn1365Lys	p.N1365K	ENST00000330684	NM_001134407.1	1365	aaC/aaA																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732954	74732954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	61	444	0	ENST00000359995.5:c.289G>T	p.Asp97Tyr	p.D97Y	ENST00000359995	NM_001195427.1	97	Gac/Tac																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78921077	78921078	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	56	915	0	ENST00000306801.3:c.3191_3192insT	p.Arg1066SerfsTer36	p.R1066Sfs*36	ENST00000306801	NM_020761.2	1064	aac/aaTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291775	15291775	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	83	904	0	ENST00000263388.2:c.2991C>A	p.Cys997Ter	p.C997*	ENST00000263388	NM_000435.2	997	tgC/tgA																																																																															
JAK3	3718	MSKCC	GRCh37	19	17954643	17954643	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201067961		P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	141	1034	2	ENST00000458235.1:c.251C>T	p.Pro84Leu	p.P84L	ENST00000458235	NM_000215.3	84	cCg/cTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42795736	42795744	+	inframe_deletion	In_Frame_Del	DEL	CCGCCCCCG	CCGCCCCCG	-			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	89	1057	0	ENST00000575354.2:c.2725_2733del	p.Pro909_Pro911del	p.P909_P911del	ENST00000575354	NM_015125.3	909	CCGCCCCCG/-																																																																															
ATR	545	MSKCC	GRCh37	3	142243041	142243042	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	52	378	0	ENST00000350721.4:c.3946-1_3946delinsTT		p.X1316_splice	ENST00000350721	NM_001184.3	1316																																																																																
INPP4B	8821	MSKCC	GRCh37	4	143003320	143003320	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	71	714	1	ENST00000262992.4:c.2506G>C	p.Gly836Arg	p.G836R	ENST00000262992	NM_001101669.1	836	Ggt/Cgt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149495352	149495352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	283	813	0	ENST00000261799.4:c.3295G>A	p.Ala1099Thr	p.A1099T	ENST00000261799	NM_002609.3	1099	Gcg/Acg																																																																															
HGF	3082	MSKCC	GRCh37	7	81355311	81355311	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	48	424	0	ENST00000222390.5:c.1063C>G	p.Arg355Gly	p.R355G	ENST00000222390	NM_000601.4	355	Cga/Gga																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913545	39913545	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	65	828	2	ENST00000378444.4:c.4783A>T	p.Ser1595Cys	p.S1595C	ENST00000378444	NM_001123385.1	1595	Agt/Tgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006880	47006880	+	5_prime_UTR_variant	5'UTR	SNP	C	C	A			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1256	93	983	1	ENST00000329236.7:c.-1C>A		p.*1*	ENST00000329236	NM_001204466.1																																																																																	
AMER1	139285	MSKCC	GRCh37	X	63410728	63410728	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	80	866	0	ENST00000330258.3:c.2439T>A	p.Asp813Glu	p.D813E	ENST00000330258	NM_152424.3	813	gaT/gaA																																																																															
MED12	9968	MSKCC	GRCh37	X	70345950	70345951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	109	790	0	ENST00000374080.3:c.2490dup	p.Ala831CysfsTer2	p.A831Cfs*2	ENST00000374080		829	-/T																																																																															
MED12	9968	MSKCC	GRCh37	X	70349973	70349973	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	122	831	0	ENST00000374080.3:c.3956G>T	p.Arg1319Leu	p.R1319L	ENST00000374080		1319	cGc/cTc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123202423	123202423	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	44	630	0	ENST00000218089.9:c.2275C>A	p.Leu759Met	p.L759M	ENST00000218089	NM_001042749.1	759	Ctg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	197	935	2	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0024201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	67	465	4	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	167	669	1	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175282	112175282	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0024201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	57	337	0	ENST00000257430.4:c.3991A>T	p.Arg1331Ter	p.R1331*	ENST00000257430	NM_000038.5	1331	Aga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140494163	140494163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	272	961	0	ENST00000288602.6:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000288602	NM_004333.4	362	cGa/cAa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1239985410		P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	805	1045	0	ENST00000171111.5:c.959G>T	p.Arg320Leu	p.R320L	ENST00000171111	NM_203500.1	320	cGg/cTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	242	235	2	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574030	7574030	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	676	866	0	ENST00000269305.4:c.997del	p.Arg333ValfsTer12	p.R333Vfs*12	ENST00000269305	NM_001126112.2	333	Cgt/gt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023741	27023741	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	398	683	1	ENST00000324856.7:c.848del	p.Gly283AlafsTer80	p.G283Afs*80	ENST00000324856	NM_006015.4	283	Ggc/gc																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599185	28599185	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	624	1173	2	ENST00000253063.3:c.631G>T	p.Val211Leu	p.V211L	ENST00000253063	NM_031459.4	211	Gtg/Ttg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464883	120464883	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	199	569	0	ENST00000256646.2:c.5189T>A	p.Val1730Glu	p.V1730E	ENST00000256646	NM_024408.3	1730	gTg/gAg																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50479225	50479225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	204	767	2	ENST00000394963.4:c.73G>A	p.Ala25Thr	p.A25T	ENST00000394963	NM_003076.4	25	Gct/Act																																																																															
CDK8	1024	MSKCC	GRCh37	13	26959403	26959403	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	404	755	0	ENST00000381527.3:c.570G>C	p.Leu190Phe	p.L190F	ENST00000381527	NM_001260.1	190	ttG/ttC																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14014044	14014044	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	210	641	1	ENST00000311895.7:c.22C>T	p.Arg8Ter	p.R8*	ENST00000311895	NM_005236.2	8	Cga/Tga																																																																															
SPOP	8405	MSKCC	GRCh37	17	47677825	47677825	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	222	671	0	ENST00000347630.2:c.1040A>T	p.His347Leu	p.H347L	ENST00000347630	NM_001007230.1	347	cAc/cTc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1646372	1646372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	916	1126	2	ENST00000344749.5:c.127G>T	p.Ala43Ser	p.A43S	ENST00000344749	NM_001136139.2	43	Gcg/Tcg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46597045	46597045	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777687956		P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	192	758	2	ENST00000263734.3:c.859G>A	p.Glu287Lys	p.E287K	ENST00000263734	NM_001430.4	287	Gag/Aag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526279	31526279	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	625	1179	0	ENST00000344624.3:c.761G>C	p.Arg254Pro	p.R254P	ENST00000344624		254	cGc/cCc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149503852	149503852	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	417	873	0	ENST00000261799.4:c.1984C>A	p.Leu662Met	p.L662M	ENST00000261799	NM_002609.3	662	Ctg/Atg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683719	162683719	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	456	903	1	ENST00000366898.1:c.250G>T	p.Gly84Ter	p.G84*	ENST00000366898	NM_004562.2	84	Gga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132748	152132748	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	204	703	0	ENST00000262189.6:c.124A>T	p.Lys42Ter	p.K42*	ENST00000262189	NM_170606.2	42	Aaa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132788	152132788	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	238	922	0	ENST00000262189.6:c.84C>G	p.Ser28Arg	p.S28R	ENST00000262189	NM_170606.2	28	agC/agG																																																																															
PREX2	80243	MSKCC	GRCh37	8	68989639	68989639	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	201	689	0	ENST00000288368.4:c.1577G>T	p.Cys526Phe	p.C526F	ENST00000288368	NM_024870.2	526	tGc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578276	7578312	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATC	AGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATC	-			P-0024217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	75	587	0	ENST00000269305.4:c.560-23_573del		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
AKT2	208	MSKCC	GRCh37	19	40762871	40762871	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	129	602	0	ENST00000392038.2:c.137A>T	p.Asp46Val	p.D46V	ENST00000392038	NM_001626.4	46	gAt/gTt																																																																															
TET2	54790	MSKCC	GRCh37	4	106157335	106157336	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	48	385	0	ENST00000380013.4:c.2241dup	p.Leu748IlefsTer6	p.L748Ifs*6	ENST00000380013	NM_001127208.2	746	caa/cAaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692896	89692896	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs398123322		P-0024249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	262	646	0	ENST00000371953.3:c.380G>T	p.Gly127Val	p.G127V	ENST00000371953	NM_000314.4	127	gGa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057520000		P-0024249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	761	1145	0	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262293	16262294	+	missense_variant	Missense_Mutation	DNP	GC	GC	CT			P-0024249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	21	320	0	ENST00000375759.3:c.9558_9559delinsCT	p.His3187Tyr	p.H3187Y	ENST00000375759	NM_015001.2	3186	ctGCac/ctCTac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32930652	32930652	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881557		P-0024249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	289	608	1	ENST00000380152.3:c.7523G>A	p.Gly2508Asp	p.G2508D	ENST00000380152		2508	gGc/gAc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117709079	117709079	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs776365305		P-0024249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	46	803	0	ENST00000368508.3:c.1878C>G	p.Phe626Leu	p.F626L	ENST00000368508	NM_002944.2	626	ttC/ttG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0024296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	441	391	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25497824	25497824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	254	574	0	ENST00000264709.3:c.625C>T	p.Arg209Cys	p.R209C	ENST00000264709	NM_175629.2	209	Cgc/Tgc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482606	56482606	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	406	697	1	ENST00000267101.3:c.1063A>G	p.Thr355Ala	p.T355A	ENST00000267101	NM_001982.3	355	Acc/Gcc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94924617	94924617	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1433012201		P-0024296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	32	613	0	ENST00000536441.1:c.293G>A	p.Arg98His	p.R98H	ENST00000536441	NM_144665.3	98	cGc/cAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118940	115118940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	125	263	0	ENST00000257566.3:c.401C>T	p.Pro134Leu	p.P134L	ENST00000257566	NM_016569.3	134	cCt/cTt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2114342	2114342	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs45517179		P-0024309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	609	734	2	ENST00000219476.3:c.1513C>T	p.Arg505Ter	p.R505*	ENST00000219476	NM_000548.3	505	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577571	7577586	+	frameshift_variant	Frame_Shift_Del	DEL	ATGTAGTTGTAGTGGA	ATGTAGTTGTAGTGGA	-			P-0024309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	492	655	0	ENST00000269305.4:c.695_710del	p.Ile232SerfsTer10	p.I232Sfs*10	ENST00000269305	NM_001126112.2	232	aTCCACTACAACTACATg/ag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519893		P-0024400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	123	519	0	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs104886003		P-0024400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	43	363	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115722	8115722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	90	279	0	ENST00000346208.3:c.1068G>A	p.Met356Ile	p.M356I	ENST00000346208		356	atG/atA																																																																															
ATM	472	MSKCC	GRCh37	11	108143468	108143468	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1297911790		P-0024400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	47	313	0	ENST00000278616.4:c.3173G>A	p.Trp1058Ter	p.W1058*	ENST00000278616	NM_000051.3	1058	tGg/tAg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813612	50813612	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	60	407	0	ENST00000398568.2:c.1166C>G	p.Ser389Cys	p.S389C	ENST00000398568	NM_001042412.1	389	tCt/tGt																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56801410	56801410	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	56	368	0	ENST00000337432.4:c.917del	p.Gly306AspfsTer8	p.G306Dfs*8	ENST00000337432	NM_058216.2	305	tGg/tg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178097155	178097155	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	70	232	0	ENST00000397062.3:c.559G>C	p.Val187Leu	p.V187L	ENST00000397062	NM_006164.4	187	Gtt/Ctt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048806	180048806	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	60	552	0	ENST00000261937.6:c.1756G>C	p.Glu586Gln	p.E586Q	ENST00000261937	NM_182925.4	586	Gag/Cag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513226	106513226	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	41	222	0	ENST00000359195.3:c.2130G>C	p.Gln710His	p.Q710H	ENST00000359195	NM_002649.2	710	caG/caC																																																																															
JAK2	3717	MSKCC	GRCh37	9	5072490	5072490	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0024400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			4	24	159	0	ENST00000381652.3:c.1642-2A>C		p.X548_splice	ENST00000381652	NM_004972.3	548																																																																																
GNAQ	2776	MSKCC	GRCh37	9	80343519	80343519	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765491785		P-0024400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	34	347	0	ENST00000286548.4:c.800C>T	p.Ser267Phe	p.S267F	ENST00000286548	NM_002072.3	267	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577595	7577598	+	frameshift_variant	Frame_Shift_Del	DEL	CAGT	CAGT	-			P-0024450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	197	586	0	ENST00000269305.4:c.683_686del	p.Asp228ValfsTer18	p.D228Vfs*18	ENST00000269305	NM_001126112.2	228	gACTGt/gt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101597	27101597	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs151074395		P-0024450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	30	784	0	ENST00000324856.7:c.4879C>G	p.Pro1627Ala	p.P1627A	ENST00000324856	NM_006015.4	1627	Cct/Gct																																																																															
MDM4	4194	MSKCC	GRCh37	1	204499917	204499917	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200898280		P-0024450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	78	516	2	ENST00000367182.3:c.259C>T	p.Arg87Cys	p.R87C	ENST00000367182	NM_001278516.1	87	Cgt/Tgt																																																																															
EP300	2033	MSKCC	GRCh37	22	41565592	41565607	+	frameshift_variant	Frame_Shift_Del	DEL	GGATATTTAGAATATG	GGATATTTAGAATATG	-			P-0024450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	78	467	1	ENST00000263253.7:c.4258_4273del	p.Gly1420SerfsTer4	p.G1420Sfs*4	ENST00000263253	NM_001429.3	1420	GGATATTTAGAATATGtc/tc																																																																															
IGF2	3481	MSKCC	GRCh37	11	2156749	2156749	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781634507		P-0024487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	176	732	0	ENST00000434045.2:c.173G>A	p.Gly58Glu	p.G58E	ENST00000434045	NM_001127598.1	58	gGa/gAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993469	72993476	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGTACA	CGGGTACA	-			P-0024487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	215	737	0	ENST00000268489.5:c.569_576del	p.Val190AlafsTer17	p.V190Afs*17	ENST00000268489	NM_006885.3	190	gTGTACCCG/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7574002	7574003	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	242	835	0	ENST00000269305.4:c.1024dup	p.Arg342ProfsTer5	p.R342Pfs*5	ENST00000269305	NM_001126112.2	342	cga/cCga																																																																															
SOS1	6654	MSKCC	GRCh37	2	39224177	39224177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0024487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	182	487	0	ENST00000402219.2:c.2967G>C	p.Arg989Ser	p.R989S	ENST00000402219	NM_005633.3	989	agG/agC																																																																															
TERT	7015	MSKCC	GRCh37	5	1294984	1294984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	35	73	0	ENST00000310581.5:c.121C>T	p.Arg41Cys	p.R41C	ENST00000310581	NM_198253.2	41	Cgc/Tgc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228310	53228310	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057517955		P-0024487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	237	378	2	ENST00000375401.3:c.2092G>A	p.Glu698Lys	p.E698K	ENST00000375401	NM_004187.3	698	Gag/Aag																																																																															
WT1	7490	MSKCC	GRCh37	11	32439192	32439192	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	35	634	0	ENST00000332351.3:c.881T>C	p.Leu294Ser	p.L294S	ENST00000332351	NM_024426.4	294	tTa/tCa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469134	25469134	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1205125035		P-0024518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	64	822	0	ENST00000264709.3:c.1324G>C	p.Glu442Gln	p.E442Q	ENST00000264709	NM_175629.2	442	Gaa/Caa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	123	755	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	149	760	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028638	12028638	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	54	513	1	ENST00000353533.5:c.841C>T	p.Arg281Ter	p.R281*	ENST00000353533	NM_003010.3	281	Cga/Tga																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515211	103515211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759628522		P-0024532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	45	441	1	ENST00000355739.4:c.1712C>T	p.Pro571Leu	p.P571L	ENST00000355739	NM_000123.3	571	cCg/cTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259270	16259270	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs774668447		P-0024532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	45	404	0	ENST00000375759.3:c.6535G>T	p.Ala2179Ser	p.A2179S	ENST00000375759	NM_015001.2	2179	Gca/Tca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099123	27099123	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0024532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	75	644	0	ENST00000324856.7:c.3539+1del		p.S1180fs	ENST00000324856	NM_006015.4	1180	aGc/ac																																																																															
POLE	5426	MSKCC	GRCh37	12	133202830	133202830	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	123	840	0	ENST00000320574.5:c.6404T>C	p.Val2135Ala	p.V2135A	ENST00000320574	NM_006231.2	2135	gTc/gCc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211685	36211685	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1416954696		P-0024532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	73	707	1	ENST00000222270.7:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000222270	NM_014727.1	479	cGg/cAg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101867493	101867493	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	10	65	0	ENST00000374994.4:c.7del	p.Ala3ArgfsTer47	p.A3Rfs*47	ENST00000374994	NM_004612.2	2	gaG/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0024534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	407	747	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097738	8097738	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	205	660	0	ENST00000346208.3:c.120G>C	p.Gln40His	p.Q40H	ENST00000346208		40	caG/caC																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857926	9857926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	159	599	0	ENST00000330684.3:c.3475C>T	p.Arg1159Cys	p.R1159C	ENST00000330684	NM_001134407.1	1159	Cgc/Tgc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78617593	78617593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	129	445	1	ENST00000306801.3:c.331G>A	p.Glu111Lys	p.E111K	ENST00000306801	NM_020761.2	111	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	42	556	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs879253911		P-0024537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	127	568	0	ENST00000269305.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000269305	NM_001126112.2	180	Gag/Aag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495620	56495621	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0024537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	48	452	0	ENST00000267101.3:c.3810_3811delinsAT	p.Gly1271Cys	p.G1271C	ENST00000267101	NM_001982.3	1270	ggTGgt/ggATgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	48	588	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0024586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	240	804	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112175240	112175240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	44	391	0	ENST00000257430.4:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000257430	NM_000038.5	1317	Gaa/Taa																																																																															
HGF	3082	MSKCC	GRCh37	7	81335697	81335697	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779933934		P-0024586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	50	646	1	ENST00000222390.5:c.1663G>A	p.Gly555Arg	p.G555R	ENST00000222390	NM_000601.4	555	Gga/Aga																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609757	81609757	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs781210779		P-0024586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	30	512	0	ENST00000298171.2:c.1355T>C	p.Leu452Pro	p.L452P	ENST00000298171	NM_000369.2	452	cTc/cCc																																																																															
APC	324	MSKCC	GRCh37	5	112174641	112174651	+	frameshift_variant	Frame_Shift_Del	DEL	CTAATCATGGA	CTAATCATGGA	-			P-0024586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	55	551	0	ENST00000257430.4:c.3350_3360del	p.Ser1117TyrfsTer2	p.S1117Yfs*2	ENST00000257430	NM_000038.5	1117	tCTAATCATGGA/t																																																																															
APC	324	MSKCC	GRCh37	5	112174668	112174668	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs767339739		P-0024586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	53	522	1	ENST00000257430.4:c.3377G>T	p.Ser1126Ile	p.S1126I	ENST00000257430	NM_000038.5	1126	aGc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0024598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	215	783	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0024600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	85	453	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519996		P-0024600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	147	765	0	ENST00000269305.4:c.395A>T	p.Lys132Met	p.K132M	ENST00000269305	NM_001126112.2	132	aAg/aTg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46736340	46736340	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs749669280		P-0024600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	43	429	0	ENST00000371975.4:c.1052A>G	p.His351Arg	p.H351R	ENST00000371975	NM_003579.3	351	cAt/cGt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30093408	30093408	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	21	582	0	ENST00000331968.5:c.1855T>A	p.Phe619Ile	p.F619I	ENST00000331968	NM_002742.2	619	Ttt/Att																																																																															
CUL3	8452	MSKCC	GRCh37	2	225378335	225378335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	48	293	0	ENST00000264414.4:c.560G>A	p.Cys187Tyr	p.C187Y	ENST00000264414	NM_003590.4	187	tGc/tAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0024614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	687	516	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	129	597	0	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc																																																																															
RB1	5925	MSKCC	GRCh37	13	49039399	49039399	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	37	728	2	ENST00000267163.4:c.2384C>A	p.Ser795Ter	p.S795*	ENST00000267163	NM_000321.2	795	tCa/tAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0024631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	14	588	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68867376	68867378	+	frameshift_variant	Frame_Shift_Del	DEL	ATG	ATG	T			P-0024631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	153	444	0	ENST00000261769.5:c.2623_2625delinsT	p.Met875LeufsTer39	p.M875Lfs*39	ENST00000261769	NM_004360.3	875	ATG/T																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	333	586	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913315		P-0024635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	244	670	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602488	10602488	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1397945617		P-0024635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	265	536	1	ENST00000171111.5:c.1090G>T	p.Gly364Cys	p.G364C	ENST00000171111	NM_203500.1	364	Ggc/Tgc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180050946	180050946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	194	872	0	ENST00000261937.6:c.1537G>A	p.Gly513Arg	p.G513R	ENST00000261937	NM_182925.4	513	Gga/Aga																																																																															
AKT3	10000	MSKCC	GRCh37	1	243800965	243800965	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	489	609	0	ENST00000263826.5:c.509G>T	p.Ser170Ile	p.S170I	ENST00000263826	NM_005465.4	170	aGt/aTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717750	89717750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	115	427	0	ENST00000371953.3:c.775C>T	p.His259Tyr	p.H259Y	ENST00000371953	NM_000314.4	259	Cac/Tac																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281813	49281813	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	174	610	0	ENST00000282018.3:c.860T>A	p.Leu287Ter	p.L287*	ENST00000282018	NM_020377.2	287	tTg/tAg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657656	37657656	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	137	548	0	ENST00000447079.4:c.2573G>T	p.Arg858Leu	p.R858L	ENST00000447079	NM_015083.1	858	cGg/cTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905345	50905345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	330	787	0	ENST00000440232.2:c.553C>T	p.Pro185Ser	p.P185S	ENST00000440232	NM_002691.3	185	Ccg/Tcg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023837	31023837	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	134	552	0	ENST00000375687.4:c.3322G>C	p.Val1108Leu	p.V1108L	ENST00000375687	NM_015338.5	1108	Gtg/Ctg																																																																															
SMO	6608	MSKCC	GRCh37	7	128848680	128848680	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	179	636	0	ENST00000249373.3:c.1345A>T	p.Met449Leu	p.M449L	ENST00000249373	NM_005631.4	449	Atg/Ttg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	186	706	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579369	7579369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	160	835	0	ENST00000269305.4:c.318C>G	p.Ser106Arg	p.S106R	ENST00000269305	NM_001126112.2	106	agC/agG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441771	49441771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	111	581	0	ENST00000301067.7:c.4213C>T	p.His1405Tyr	p.H1405Y	ENST00000301067	NM_003482.3	1405	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578552	7578556	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GTACT	GTACT	-			P-0024679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	191	732	0	ENST00000269305.4:c.376-2_378del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	1162	686	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108186757	108186757	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs864622251		P-0024680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	68	505	1	ENST00000278616.4:c.6115G>A	p.Glu2039Lys	p.E2039K	ENST00000278616	NM_000051.3	2039	Gaa/Aaa																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867536	45867536	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767916267		P-0024680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	44	697	3	ENST00000391945.4:c.772C>T	p.Arg258Trp	p.R258W	ENST00000391945	NM_000400.3	258	Cgg/Tgg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87317267	87317267	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1052977316		P-0024680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	101	543	0	ENST00000277120.3:c.292A>G	p.Ile98Val	p.I98V	ENST00000277120		98	Att/Gtt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849924	156849924	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	86	527	0	ENST00000524377.1:c.2180C>A	p.Pro727His	p.P727H	ENST00000524377	NM_002529.3	727	cCc/cAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877323	28877323	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	54	399	0	ENST00000282397.4:c.3998A>T	p.Tyr1333Phe	p.Y1333F	ENST00000282397	NM_002019.4	1333	tAc/tTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288854	15288854	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	13	118	0	ENST00000263388.2:c.3885G>C	p.Glu1295Asp	p.E1295D	ENST00000263388	NM_000435.2	1295	gaG/gaC																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26022254	26022254	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0024680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	73	465	0	ENST00000435504.4:c.403G>T	p.Val135Leu	p.V135L	ENST00000435504		135	Gta/Tta																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62319060	62319060	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	T			P-0024680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	157	612	0	ENST00000482936.1:c.1418G>T	p.Arg473Leu	p.R473L	ENST00000482936		473	cGc/cTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921365	178921365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	78	603	0	ENST00000263967.3:c.847C>T	p.Pro283Ser	p.P283S	ENST00000263967	NM_006218.2	283	Ccc/Tcc																																																																															
TET2	54790	MSKCC	GRCh37	4	106193953	106193953	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	29	256	0	ENST00000380013.4:c.4415A>T	p.Lys1472Met	p.K1472M	ENST00000380013	NM_001127208.2	1472	aAg/aTg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163295845	163295845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	131	662	0	ENST00000271452.3:c.4G>A	p.Glu2Lys	p.E2K	ENST00000271452	NM_145697.2	2	Gaa/Aaa																																																																															
WT1	7490	MSKCC	GRCh37	11	32456272	32456272	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	191	953	1	ENST00000332351.3:c.620A>T	p.Glu207Val	p.E207V	ENST00000332351	NM_024426.4	207	gAg/gTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948747	71948748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs760925109		P-0024689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	134	791	10	ENST00000298229.2:c.3466dup	p.Arg1156ProfsTer59	p.R1156Pfs*59	ENST00000298229	NM_001567.3	1153	-/C																																																																															
CDK8	1024	MSKCC	GRCh37	13	26978108	26978108	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	204	880	0	ENST00000381527.3:c.1285G>C	p.Ala429Pro	p.A429P	ENST00000381527	NM_001260.1	429	Gct/Cct																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582131	95582131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	125	469	0	ENST00000343455.3:c.1780G>T	p.Val594Phe	p.V594F	ENST00000343455	NM_177438.2	594	Gtt/Ttt																																																																															
STK11	6794	MSKCC	GRCh37	19	1222987	1222987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	149	585	2	ENST00000326873.7:c.924G>T	p.Trp308Cys	p.W308C	ENST00000326873	NM_000455.4	308	tgG/tgT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602686	10602686	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	195	894	0	ENST00000171111.5:c.892A>G	p.Lys298Glu	p.K298E	ENST00000171111	NM_203500.1	298	Aag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0024692-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			953	367	1201	2	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0024692-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			261	41	286	2	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89352575	89352575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1301722354		P-0024692-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			650	79	600	0	ENST00000301030.4:c.764G>A	p.Arg255Gln	p.R255Q	ENST00000301030	NM_001256183.1	255	cGg/cAg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884908	134884908	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202034365		P-0024692-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			529	80	612	0	ENST00000398015.3:c.1684G>A	p.Val562Ile	p.V562I	ENST00000398015	NM_004441.4	562	Gtc/Atc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2120544	2120545	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0024692-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			882	204	1237	0	ENST00000219476.3:c.1807_1808dup	p.Leu604ProfsTer95	p.L604Pfs*95	ENST00000219476	NM_000548.3	602	tac/tACac																																																																															
APC	324	MSKCC	GRCh37	5	112176018	112176018	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024692-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			268	21	299	0	ENST00000257430.4:c.4728del	p.Glu1577AsnfsTer73	p.E1577Nfs*73	ENST00000257430	NM_000038.5	1576	gAa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	92	553	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81957187	81957187	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	112	472	0	ENST00000359376.3:c.2405A>T	p.Glu802Val	p.E802V	ENST00000359376	NM_002661.3	802	gAg/gTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038894	47038894	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0024695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	47	652	0	ENST00000329236.7:c.670A>T	p.Thr224Ser	p.T224S	ENST00000329236	NM_001204466.1	224	Acc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0024721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	155	814	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118348763	118348763	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	51	422	0	ENST00000534358.1:c.3416A>G	p.Lys1139Arg	p.K1139R	ENST00000534358	NM_005933.3	1139	aAg/aGg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557844	21557844	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	142	775	0	ENST00000382592.4:c.2001G>C	p.Met667Ile	p.M667I	ENST00000382592	NM_014572.2	667	atG/atC																																																																															
NF1	4763	MSKCC	GRCh37	17	29657475	29657508	+	frameshift_variant	Frame_Shift_Del	DEL	TAGAATTTTTGGAAGAGTGTATTTCTGGATTTAG	TAGAATTTTTGGAAGAGTGTATTTCTGGATTTAG	-			P-0024721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	209	568	0	ENST00000358273.4:c.5771_5804del	p.Leu1924SerfsTer7	p.L1924Sfs*7	ENST00000358273	NM_001042492.2	1924	tTAGAATTTTTGGAAGAGTGTATTTCTGGATTTAGc/tc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151893052	151893085	+	frameshift_variant	Frame_Shift_Del	DEL	TGTTTAAAACTTCAGAAATATCAGCTAATGGGTC	TGTTTAAAACTTCAGAAATATCAGCTAATGGGTC	-			P-0024721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	41	631	0	ENST00000262189.6:c.4285_4318del	p.Asp1429GlnfsTer8	p.D1429Qfs*8	ENST00000262189	NM_170606.2	1429	GACCCATTAGCTGATATTTCTGAAGTTTTAAACAca/ca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486128	8486155	+	frameshift_variant	Frame_Shift_Del	DEL	CTGAGAGCCTGAAGACGTATGATGCTCC	CTGAGAGCCTGAAGACGTATGATGCTCC	-			P-0024721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	63	504	0	ENST00000356435.5:c.2662_2689del	p.Gly888ProfsTer12	p.G888Pfs*12	ENST00000356435		888	GGAGCATCATACGTCTTCAGGCTCTCAGcc/cc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39930282	39930282	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	82	781	1	ENST00000378444.4:c.3182A>T	p.Lys1061Met	p.K1061M	ENST00000378444	NM_001123385.1	1061	aAg/aTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271883	15271896	+	frameshift_variant	Frame_Shift_Del	DEL	GGAACGAGGGGCCT	GGAACGAGGGGCCT	-			P-0024721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	87	651	0	ENST00000263388.2:c.6543_6556del	p.Gly2182AlafsTer55	p.G2182Afs*55	ENST00000263388	NM_000435.2	2181	ccAGGCCCCTCGTTCCtg/cctg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	122	622	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519989		P-0024741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	343	617	0	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0024786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	389	708	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458612	120458612	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	158	577	0	ENST00000256646.2:c.6733del	p.His2245IlefsTer10	p.H2245Ifs*10	ENST00000256646	NM_024408.3	2245	Cat/at																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798142	32798142	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	164	629	0	ENST00000374899.4:c.1537G>C	p.Ala513Pro	p.A513P	ENST00000374899	NM_018833.2	513	Gct/Cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0024801-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			155	939	792	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
NF2	4771	MSKCC	GRCh37	22	30038260	30038260	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1185977513		P-0024801-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			430	300	485	0	ENST00000338641.4:c.433G>A	p.Ala145Thr	p.A145T	ENST00000338641	NM_000268.3	145	Gcc/Acc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16062142	16062142	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1391561740		P-0024801-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			1711	294	503	0	ENST00000268712.3:c.664C>G	p.Pro222Ala	p.P222A	ENST00000268712	NM_006311.3	222	Ccc/Gcc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15278122	15278122	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024801-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			795	666	570	0	ENST00000263388.2:c.5300C>G	p.Ala1767Gly	p.A1767G	ENST00000263388	NM_000435.2	1767	gCa/gGa																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22123583	22123583	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024801-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			290	445	434	0	ENST00000215832.6:c.993del	p.Phe331LeufsTer16	p.F331Lfs*16	ENST00000215832	NM_002745.4	331	ttC/tt																																																																															
KIT	3815	MSKCC	GRCh37	4	55592115	55592115	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024801-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			469	212	423	0	ENST00000288135.5:c.1439C>G	p.Ser480Cys	p.S480C	ENST00000288135	NM_000222.2	480	tCt/tGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177789	56177789	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024801-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			357	253	567	0	ENST00000399503.3:c.2762G>T	p.Ser921Ile	p.S921I	ENST00000399503	NM_005921.1	921	aGt/aTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006851	47006851	+	5_prime_UTR_variant	5'UTR	SNP	C	C	A			P-0024801-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			651	218	566	1	ENST00000329236.7:c.-30C>A		p.*10*	ENST00000329236	NM_001204466.1																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	220	326	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0024804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	61	423	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256320	16256321	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	35	411	0	ENST00000375759.3:c.3591dup	p.Asp1198ArgfsTer4	p.D1198Rfs*4	ENST00000375759	NM_015001.2	1195	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	122	712	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	81	617	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0024838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	197	637	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0024838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	67	357	2	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0024838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	103	585	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0024838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	60	274	0	ENST00000257430.4:c.4192_4193del	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	114	573	1	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281926	49281926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	72	623	1	ENST00000282018.3:c.973C>T	p.Pro325Ser	p.P325S	ENST00000282018	NM_020377.2	325	Cca/Tca																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245389	153245389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	126	574	1	ENST00000281708.4:c.1802C>T	p.Ser601Phe	p.S601F	ENST00000281708	NM_033632.3	601	tCt/tTt																																																																															
ATM	472	MSKCC	GRCh37	11	108119660	108119660	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	56	129	0	ENST00000278616.4:c.1066G>A	p.Val356Ile	p.V356I	ENST00000278616	NM_000051.3	356	Gtt/Att																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562490	95562490	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	164	343	0	ENST00000343455.3:c.4767G>T	p.Lys1589Asn	p.K1589N	ENST00000343455	NM_177438.2	1589	aaG/aaT																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129318	2129318	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	292	604	0	ENST00000219476.3:c.3173A>G	p.Lys1058Arg	p.K1058R	ENST00000219476	NM_000548.3	1058	aAa/aGa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81934347	81934347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	278	483	2	ENST00000359376.3:c.1324C>T	p.Pro442Ser	p.P442S	ENST00000359376	NM_002661.3	442	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863224683		P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	404	720	0	ENST00000269305.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000269305	NM_001126112.2	130	Ctc/Ttc																																																																															
NF1	4763	MSKCC	GRCh37	17	29585361	29585361	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	177	467	0	ENST00000358273.4:c.4174-1G>T		p.X1392_splice	ENST00000358273	NM_001042492.2	1392																																																																																
PRKAR1A	5573	MSKCC	GRCh37	17	66511574	66511574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	65	307	0	ENST00000358598.2:c.34G>A	p.Ala12Thr	p.A12T	ENST00000358598	NM_212471.2	12	Gca/Aca																																																																															
STK11	6794	MSKCC	GRCh37	19	1221966	1221966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	270	690	0	ENST00000326873.7:c.881C>T	p.Pro294Leu	p.P294L	ENST00000326873	NM_000455.4	294	cCg/cTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600393	10600393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	334	776	1	ENST00000171111.5:c.1462G>A	p.Glu488Lys	p.E488K	ENST00000171111	NM_203500.1	488	Gag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170510	11170510	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	316	623	2	ENST00000344626.4:c.4717G>T	p.Glu1573Ter	p.E1573*	ENST00000344626	NM_003072.3	1573	Gag/Tag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55138644	55138644	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	223	433	0	ENST00000257290.5:c.1321C>A	p.Pro441Thr	p.P441T	ENST00000257290	NM_006206.4	441	Ccg/Acg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139810	55139810	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	198	434	0	ENST00000257290.5:c.1471G>T	p.Ala491Ser	p.A491S	ENST00000257290	NM_006206.4	491	Gcc/Tcc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630977	187630977	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	99	404	0	ENST00000441802.2:c.5G>T	p.Gly2Val	p.G2V	ENST00000441802	NM_005245.3	2	gGg/gTg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86679595	86679595	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	139	488	0	ENST00000274376.6:c.2756C>G	p.Ser919Ter	p.S919*	ENST00000274376	NM_002890.2	919	tCa/tGa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180038374	180038384	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCGTCAGCC	CAGCGTCAGCC	-			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	316	567	0	ENST00000261937.6:c.3633_3643del	p.Ala1212GlyfsTer30	p.A1212Gfs*30	ENST00000261937	NM_182925.4	1211	caGGCTGACGCTGag/caag																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818875	32818875	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	266	527	0	ENST00000354258.4:c.1076del	p.Leu359ArgfsTer5	p.L359Rfs*5	ENST00000354258	NM_000593.5	359	cTg/cg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129295	152129295	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	256	437	3	ENST00000206249.3:c.248G>T	p.Gly83Val	p.G83V	ENST00000206249	NM_000125.3	83	gGg/gTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81388023	81388023	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	80	523	0	ENST00000222390.5:c.352C>A	p.Leu118Ile	p.L118I	ENST00000222390	NM_000601.4	118	Ctc/Atc																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128322075	128322075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	220	402	0	ENST00000265960.3:c.685G>T	p.Ala229Ser	p.A229S	ENST00000265960	NM_001006617.1	229	Gcc/Tcc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781186	135781186	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	249	503	0	ENST00000298552.3:c.1779A>T	p.Arg593Ser	p.R593S	ENST00000298552	NM_001162426.1	593	agA/agT																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255464	16255464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	62	484	0	ENST00000375759.3:c.2729C>A	p.Ser910Tyr	p.S910Y	ENST00000375759	NM_015001.2	910	tCt/tAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624296	89624296	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs786201995		P-0024858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	114	552	0	ENST00000371953.3:c.70G>T	p.Asp24Tyr	p.D24Y	ENST00000371953	NM_000314.4	24	Gac/Tac																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572194	64572194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	129	405	0	ENST00000337652.1:c.1460G>T	p.Gly487Val	p.G487V	ENST00000337652	NM_130803.2	487	gGc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs17849781		P-0024858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	339	631	1	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980874	40980874	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	125	503	1	ENST00000373198.4:c.1612C>T	p.Gln538Ter	p.Q538*	ENST00000373198	NM_133170.3	538	Cag/Tag																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62312038	62312038	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs371141081		P-0024858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	183	659	2	ENST00000482936.1:c.1157C>T	p.Thr386Met	p.T386M	ENST00000482936		386	aCg/aTg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098954	178098954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	252	298	0	ENST00000397062.3:c.91G>A	p.Gly31Arg	p.G31R	ENST00000397062	NM_006164.4	31	Gga/Aga																																																																															
STK11	6794	MSKCC	GRCh37	19	1207168	1207168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	244	461	1	ENST00000326873.7:c.256C>T	p.Arg86Ter	p.R86*	ENST00000326873	NM_000455.4	86	Cga/Tga																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945060	38945060	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	243	383	0	ENST00000357387.3:c.4744C>T	p.Gln1582Ter	p.Q1582*	ENST00000357387	NM_152756.3	1582	Caa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836778	151836778	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	152	430	0	ENST00000262189.6:c.14442G>C	p.Glu4814Asp	p.E4814D	ENST00000262189	NM_170606.2	4814	gaG/gaC																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862756	9862756	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	170	373	0	ENST00000330684.3:c.2547C>A	p.Phe849Leu	p.F849L	ENST00000330684	NM_001134407.1	849	ttC/ttA																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645681	12645681	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs397516830		P-0024886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	224	237	0	ENST00000251849.4:c.788T>G	p.Val263Gly	p.V263G	ENST00000251849	NM_002880.3	263	gTc/gGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836825	151836825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	193	492	1	ENST00000262189.6:c.14395G>A	p.Glu4799Lys	p.E4799K	ENST00000262189	NM_170606.2	4799	Gag/Aag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041674	47041674	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	251	243	0	ENST00000329236.7:c.1665del	p.Lys556ArgfsTer70	p.K556Rfs*70	ENST00000329236	NM_001204466.1	555	tcG/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0024898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	143	504	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0024898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	42	733	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0025001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	110	670	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473732	67473732	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	176	595	0	ENST00000327367.4:c.812T>G	p.Leu271Arg	p.L271R	ENST00000327367	NM_005902.3	271	cTa/cGa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15984031	15984031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	86	373	0	ENST00000268712.3:c.3188G>A	p.Gly1063Asp	p.G1063D	ENST00000268712	NM_006311.3	1063	gGc/gAc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62321760	62321774	+	inframe_deletion,NMD_transcript_variant	In_Frame_Del	DEL	CCTGCATGTCCCCAG	CCTGCATGTCCCCAG	-			P-0025001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	47	565	0	ENST00000482936.1:c.2383_2397del	p.His795_Leu799del	p.H795_L799del	ENST00000482936		793	gaCCTGCATGTCCCCAGc/gac																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729447	41729447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	98	622	2	ENST00000242208.4:c.1082C>T	p.Thr361Met	p.T361M	ENST00000242208	NM_002192.2	361	aCg/aTg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185184621	185184621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	82	317	1	ENST00000265026.3:c.1513C>T	p.Gln505Ter	p.Q505*	ENST00000265026	NM_004721.4	505	Caa/Taa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938476	44938488	+	frameshift_variant	Frame_Shift_Del	DEL	AGATGAAAACTGG	AGATGAAAACTGG	-			P-0025002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	84	250	0	ENST00000377967.4:c.3024_3036del	p.Asp1009IlefsTer35	p.D1009Ifs*35	ENST00000377967	NM_021140.2	1008	gcAGATGAAAACTGG/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	58	456	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0025017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	44	400	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0025017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	173	686	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114917779	114917779	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0025017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	50	309	0	ENST00000543371.1:c.1270-1G>A		p.X424_splice	ENST00000543371	NM_001198531.1	424																																																																																
FLT4	2324	MSKCC	GRCh37	5	180040015	180040015	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs564369853		P-0025017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	75	775	1	ENST00000261937.6:c.3427G>A	p.Ala1143Thr	p.A1143T	ENST00000261937	NM_182925.4	1143	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112175344	112175345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTTGAATTTTCTTCAG			P-0025017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	24	288	0	ENST00000257430.4:c.4055_4070dup	p.Ala1358Ter	p.A1358*	ENST00000257430	NM_000038.5	1351	-/GTTGAATTTTCTTCAG																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039839	47039887	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTCGCATCAGTGCTGCCTCTGTGGCCAGCACTGCCATTGCTGCGGCC	CAGTCGCATCAGTGCTGCCTCTGTGGCCAGCACTGCCATTGCTGCGGCC	-			P-0025017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	35	461	0	ENST00000329236.7:c.952_1000del	p.Arg318GlyfsTer73	p.R318Gfs*73	ENST00000329236	NM_001204466.1	316	ggCAGTCGCATCAGTGCTGCCTCTGTGGCCAGCACTGCCATTGCTGCGGCC/gg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0025024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	225	329	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8317878	8317878	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151311972		P-0025024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	100	321	0	ENST00000356435.5:c.5735C>T	p.Thr1912Met	p.T1912M	ENST00000356435		1912	aCg/aTg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625456	69625456	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	28	254	0	ENST00000334134.2:c.337G>T	p.Ala113Ser	p.A113S	ENST00000334134	NM_005247.2	113	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579397	7579397	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	223	344	0	ENST00000269305.4:c.290del	p.Val97AlafsTer26	p.V97Afs*26	ENST00000269305	NM_001126112.2	97	gTc/gc																																																																															
ATM	472	MSKCC	GRCh37	11	108201089	108201089	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	76	489	0	ENST00000278616.4:c.7456C>G	p.Arg2486Gly	p.R2486G	ENST00000278616	NM_000051.3	2486	Cga/Gga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176665248	176665248	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	38	306	0	ENST00000439151.2:c.3932G>T	p.Arg1311Leu	p.R1311L	ENST00000439151	NM_022455.4	1311	cGc/cTc																																																																															
CIC	23152	MSKCC	GRCh37	19	42799129	42799129	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139613152		P-0025139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	340	487	0	ENST00000575354.2:c.4613C>T	p.Pro1538Leu	p.P1538L	ENST00000575354	NM_015125.3	1538	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579702	7579702	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0025139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	345	560	0	ENST00000269305.4:c.94del	p.Leu32CysfsTer12	p.L32Cfs*12	ENST00000269305	NM_001126112.2	32	Ctg/tg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117642558	117642558	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0025139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	441	682	0	ENST00000368508.3:c.5642-1G>T		p.X1881_splice	ENST00000368508	NM_002944.2	1881																																																																																
CDK12	51755	MSKCC	GRCh37	17	37618954	37618954	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	444	621	0	ENST00000447079.4:c.630C>A	p.Tyr210Ter	p.Y210*	ENST00000447079	NM_015083.1	210	taC/taA																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619371	37619371	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0025153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	169	323	1	ENST00000447079.4:c.1046+1G>T		p.X349_splice	ENST00000447079	NM_015083.1	349																																																																																
GSK3B	2932	MSKCC	GRCh37	3	119631557	119631562	+	inframe_deletion	In_Frame_Del	DEL	TAGAGG	TAGAGG	-			P-0025153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	226	360	0	ENST00000316626.5:c.704_709del	p.Thr235_Ser236del	p.T235_S236del	ENST00000316626		235	aCCTCTAgt/agt																																																																															
STK19	8859	MSKCC	GRCh37	6	31946709	31946709	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	371	702	0	ENST00000375331.2:c.597A>T	p.Arg199Ser	p.R199S	ENST00000375331	NM_004197.1	199	agA/agT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0025168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	672	583	2	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0025168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	494	917	4	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																															
AKT3	10000	MSKCC	GRCh37	1	243727072	243727072	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773474217		P-0025168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	196	641	4	ENST00000263826.5:c.898G>A	p.Ala300Thr	p.A300T	ENST00000263826	NM_005465.4	300	Gca/Aca																																																																															
POLE	5426	MSKCC	GRCh37	12	133214674	133214674	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	168	652	2	ENST00000320574.5:c.5604C>A	p.Phe1868Leu	p.F1868L	ENST00000320574	NM_006231.2	1868	ttC/ttA																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62311258	62311258	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	T	T	C	rs761998383		P-0025168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	117	503	1	ENST00000482936.1:c.1094T>C	p.Ile365Thr	p.I365T	ENST00000482936		365	aTc/aCc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118348903	118349105	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGCAGTGCTGCAAGTAAGTGGGTGTTTCACTCTGAGATGTTGACCTCTCAACCATAAAGGTTGCTTATTTATCCCTAGTTTGTTGCAGAGATACATCAGGAAACTGAATGTGGTTGTAATTGAGTTGCAAGACTTGTTACAGTTAGATTTTGTGGTGTGGGCTGTGCTTAAATAAGAAATACTCTGGGGCCATGCTGTCATT	AAGCAGTGCTGCAAGTAAGTGGGTGTTTCACTCTGAGATGTTGACCTCTCAACCATAAAGGTTGCTTATTTATCCCTAGTTTGTTGCAGAGATACATCAGGAAACTGAATGTGGTTGTAATTGAGTTGCAAGACTTGTTACAGTTAGATTTTGTGGTGTGGGCTGTGCTTAAATAAGAAATACTCTGGGGCCATGCTGTCATT	-			P-0025176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	35	209	0	ENST00000534358.1:c.3558_3569+191del		p.X1186_splice	ENST00000534358	NM_005933.3	1186																																																																																
HNF1A	6927	MSKCC	GRCh37	12	121432085	121432085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1344788314		P-0025176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	136	564	0	ENST00000257555.6:c.832C>T	p.Arg278Trp	p.R278W	ENST00000257555		278	Cgg/Tgg																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281905	49281905	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	172	658	0	ENST00000282018.3:c.952T>C	p.Ser318Pro	p.S318P	ENST00000282018	NM_020377.2	318	Tct/Cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0025176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	416	549	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627640	37627640	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	33	486	0	ENST00000447079.4:c.1555G>C	p.Glu519Gln	p.E519Q	ENST00000447079	NM_015083.1	519	Gaa/Caa																																																																															
CIC	23152	MSKCC	GRCh37	19	42788890	42789627	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCAGCGCGGCCTCCCGTGGCCTCGGCATGTTCGGTCAGTAGCGCCTGGGCCCTGGGACTGCAGGGGTCAAGGTGTCGGGGTGCTAAGTGCGGAGTAACGGTGGTGGGGGTATAGTAGGGGAGAGAACAGTAGAGGCAGAGTAAAGGGATGACGGGGAAAGTTACGGAGCTCGGCCGGGCCGAGTGGTTAGTGATGGCAGGTGGGAGTGTAGCGGAGTGGGGCGTATCTGGGGACAGCTGTGATGTTAAAGTGATGGGATGGCACAGGTCCGCTGTAATAGAAAGGTGAGGGGTGCAGAGTAACTGGCTCTGGAGCATGGGGTAGAATAGGAACAGCACGAGACCTGCTGGTCCTAGGGGAGGAGGCTTGGATTGGGTAGTGGGGCTAAGGACAGGGCTCAGGAAGCGAGTGAGGCACTGTTAGCTGAGATCAGAGTGACAGGCTGCAGTGTGTGGTGTAGTTTGCAGAGAGCGCGACACCTAAGAACCTGGAGGGTTGTGCACTGGGGAGGGGTTCAGGAGGGAGCAGGACCAAAGGACTGCCCTCCATTGTCTGCTGGGTCCCTTTTCCCCACCCCCCAGAAAAGAGGAGGCCTTGATGGGAAAGATCTTTGCAAAGAGAGGCACAGGTCTAAGTCCCTGGAGGCTTTTATATGGGGTTGGAGGGCCCAGCGGGTTTTCAGGGGTAAGGGACAGGGTCATCGTAGTCTTGAGTGCTCTTCAGTGCTGTCTTCGTGA	TCCAGCGCGGCCTCCCGTGGCCTCGGCATGTTCGGTCAGTAGCGCCTGGGCCCTGGGACTGCAGGGGTCAAGGTGTCGGGGTGCTAAGTGCGGAGTAACGGTGGTGGGGGTATAGTAGGGGAGAGAACAGTAGAGGCAGAGTAAAGGGATGACGGGGAAAGTTACGGAGCTCGGCCGGGCCGAGTGGTTAGTGATGGCAGGTGGGAGTGTAGCGGAGTGGGGCGTATCTGGGGACAGCTGTGATGTTAAAGTGATGGGATGGCACAGGTCCGCTGTAATAGAAAGGTGAGGGGTGCAGAGTAACTGGCTCTGGAGCATGGGGTAGAATAGGAACAGCACGAGACCTGCTGGTCCTAGGGGAGGAGGCTTGGATTGGGTAGTGGGGCTAAGGACAGGGCTCAGGAAGCGAGTGAGGCACTGTTAGCTGAGATCAGAGTGACAGGCTGCAGTGTGTGGTGTAGTTTGCAGAGAGCGCGACACCTAAGAACCTGGAGGGTTGTGCACTGGGGAGGGGTTCAGGAGGGAGCAGGACCAAAGGACTGCCCTCCATTGTCTGCTGGGTCCCTTTTCCCCACCCCCCAGAAAAGAGGAGGCCTTGATGGGAAAGATCTTTGCAAAGAGAGGCACAGGTCTAAGTCCCTGGAGGCTTTTATATGGGGTTGGAGGGCCCAGCGGGTTTTCAGGGGTAAGGGACAGGGTCATCGTAGTCTTGAGTGCTCTTCAGTGCTGTCTTCGTGA	-			P-0025176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	72	427	0	ENST00000575354.2:c.37_67+707del		p.X13_splice	ENST00000575354	NM_015125.3	13																																																																																
ASXL2	55252	MSKCC	GRCh37	2	25965173	25965173	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	96	550	0	ENST00000435504.4:c.4033G>C	p.Val1345Leu	p.V1345L	ENST00000435504		1345	Gta/Cta																																																																															
XPO1	7514	MSKCC	GRCh37	2	61724034	61724055	+	frameshift_variant	Frame_Shift_Del	DEL	TCAGAGTAAATAGTGTTACAAA	TCAGAGTAAATAGTGTTACAAA	-			P-0025176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	72	507	0	ENST00000401558.2:c.847_868del	p.Phe283GlnfsTer2	p.F283Qfs*2	ENST00000401558	NM_003400.3	283	TTTGTAACACTATTTACTCTGAca/ca																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467845	66467845	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	154	402	0	ENST00000273854.3:c.424G>C	p.Gly142Arg	p.G142R	ENST00000273854	NM_004439.5	142	Gga/Cga																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797286	32797286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	179	652	0	ENST00000374899.4:c.1823C>T	p.Ala608Val	p.A608V	ENST00000374899	NM_018833.2	608	gCt/gTt																																																																															
FYN	2534	MSKCC	GRCh37	6	112015721	112015764	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGCAGCCACCTGTGGAAACCCAGGGAACAGGACATGTTACAC	CCTGCAGCCACCTGTGGAAACCCAGGGAACAGGACATGTTACAC	-			P-0025176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	77	478	0	ENST00000368678.4:c.1111-33_1121del		p.X371_splice	ENST00000368678		371																																																																																
CDKN1B	1027	MSKCC	GRCh37	12	12871129	12871129	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	57	246	0	ENST00000228872.4:c.357del	p.Ile119MetfsTer26	p.I119Mfs*26	ENST00000228872	NM_004064.3	119	aTt/at																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11924320	11924320	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0025187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	84	142	0	ENST00000353533.5:c.115+2T>A		p.X39_splice	ENST00000353533	NM_003010.3	39																																																																																
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62323146	62323146	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A			P-0025187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	442	436	0	ENST00000482936.1:c.2608G>A	p.Glu870Lys	p.E870K	ENST00000482936		870	Gaa/Aaa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168964	32168964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	67	619	0	ENST00000375023.3:c.4069C>T	p.Pro1357Ser	p.P1357S	ENST00000375023	NM_004557.3	1357	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0025207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	166	550	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
AR	367	MSKCC	GRCh37	X	66765382	66765382	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770661499		P-0025207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	74	261	0	ENST00000374690.3:c.394G>A	p.Val132Ile	p.V132I	ENST00000374690	NM_000044.3	132	Gtc/Atc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430403	78430412	+	frameshift_variant	Frame_Shift_Del	DEL	AATTAACTCT	AATTAACTCT	-			P-0025207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	29	566	0	ENST00000370768.2:c.756_765del	p.Leu252PhefsTer18	p.L252Ffs*18	ENST00000370768	NM_003902.3	252	ttAGAGTTAATT/tt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2108802	2108821	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTCTCTGGGGAGCCCACC	GGCTCTCTGGGGAGCCCACC	-	rs137854012		P-0025207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	50	605	0	ENST00000219476.3:c.909_928del	p.Trp304PhefsTer27	p.W304Ffs*27	ENST00000219476	NM_000548.3	301	atGGCTCTCTGGGGAGCCCACCgg/atgg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30322675	30322675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	105	585	0	ENST00000322652.5:c.1688G>A	p.Arg563His	p.R563H	ENST00000322652	NM_015355.2	563	cGt/cAt																																																																															
RARA	5914	MSKCC	GRCh37	17	38508177	38508177	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749735817		P-0025207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	61	401	0	ENST00000254066.5:c.485G>A	p.Arg162Gln	p.R162Q	ENST00000254066	NM_000964.3	162	cGa/cAa																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605072	46605072	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1281194175		P-0025207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	93	677	0	ENST00000263734.3:c.1289C>A	p.Ala430Asp	p.A430D	ENST00000263734	NM_001430.4	430	gCc/gAc																																																																															
TET2	54790	MSKCC	GRCh37	4	106196508	106196508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	34	471	0	ENST00000380013.4:c.4841C>T	p.Pro1614Leu	p.P1614L	ENST00000380013	NM_001127208.2	1614	cCc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	75	293	0	ENST00000257430.4:c.3910dup	p.Ile1304AsnfsTer11	p.I1304Nfs*11	ENST00000257430	NM_000038.5	1303	caa/cAaa																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197087	26197087	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	62	446	0	ENST00000356476.2:c.392T>A	p.Ile131Asn	p.I131N	ENST00000356476		131	aTt/aAt																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	12	172	1	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	203	470	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026664	6026664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	178	691	0	ENST00000265849.7:c.1732C>T	p.Arg578Cys	p.R578C	ENST00000265849	NM_000535.5	578	Cgt/Tgt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129329	152129329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	116	383	4	ENST00000206249.3:c.287del	p.Gly96ValfsTer13	p.G96Vfs*13	ENST00000206249	NM_000125.3	94	ctG/ct																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	116	280	0	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	97	490	4	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435552	56435552	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62636625		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	128	483	1	ENST00000407977.2:c.1585C>T	p.Arg529Trp	p.R529W	ENST00000407977		529	Cgg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739031	40739031	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1358914349		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	85	459	1	ENST00000373198.4:c.3253G>A	p.Val1085Ile	p.V1085I	ENST00000373198	NM_133170.3	1085	Gtc/Atc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	85	503	4	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732963	30732963	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	87	286	1	ENST00000359013.4:c.1651G>T	p.Glu551Ter	p.E551*	ENST00000359013	NM_001024847.2	551	Gag/Tag																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	128	334	1	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
ARAF	369	MSKCC	GRCh37	X	47422384	47422384	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	63	300	1	ENST00000377045.4:c.23del	p.Pro8LeufsTer26	p.P8Lfs*26	ENST00000377045	NM_001654.4	6	ggC/gg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821596	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs767179754		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	13	77	0	ENST00000268489.5:c.10579_10581del	p.Gly3527del	p.G3527del	ENST00000268489	NM_006885.3	3527	GGC/-																																																																															
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	100	282	2	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	57	220	0	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468185	120468185	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	99	451	0	ENST00000256646.2:c.4254del	p.Ser1419AlafsTer8	p.S1419Afs*8	ENST00000256646	NM_024408.3	1418	ccC/cc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272337	15272337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs776990686		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	105	563	8	ENST00000263388.2:c.6102del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2034	ccC/cc																																																																															
CASP8	841	MSKCC	GRCh37	2	202150022	202150022	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	98	461	0	ENST00000358485.4:c.1463T>C	p.Leu488Pro	p.L488P	ENST00000358485	NM_001080125.1	488	cTg/cCg																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	53	293	2	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	97	452	5	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627501	37627501	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	120	432	0	ENST00000447079.4:c.1421del	p.Asn474IlefsTer8	p.N474Ifs*8	ENST00000447079	NM_015083.1	472	gtA/gt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258889	16258889	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	150	573	1	ENST00000375759.3:c.6158del	p.Asn2053ThrfsTer11	p.N2053Tfs*11	ENST00000375759	NM_015001.2	2052	Aaa/aa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017210	31017210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	88	288	2	ENST00000375687.4:c.541G>A	p.Gly181Arg	p.G181R	ENST00000375687	NM_015338.5	181	Ggg/Agg																																																																															
RARA	5914	MSKCC	GRCh37	17	38512377	38512377	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	55	384	0	ENST00000254066.5:c.1293del	p.Arg432GlyfsTer211	p.R432Gfs*211	ENST00000254066	NM_000964.3	430	Ggg/gg																																																																															
APC	324	MSKCC	GRCh37	5	112170772	112170772	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765557332		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	153	510	0	ENST00000257430.4:c.1868G>A	p.Arg623Gln	p.R623Q	ENST00000257430	NM_000038.5	623	cGg/cAg																																																																															
MED12	9968	MSKCC	GRCh37	X	70356251	70356251	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	115	481	0	ENST00000374080.3:c.5146C>T	p.Arg1716Ter	p.R1716*	ENST00000374080		1716	Cga/Tga																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856626	111856626	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1441752820		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	73	249	0	ENST00000341259.2:c.677G>A	p.Arg226Gln	p.R226Q	ENST00000341259	NM_005475.2	226	cGg/cAg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9770535	9770535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	113	544	0	ENST00000377346.4:c.22C>T	p.Pro8Ser	p.P8S	ENST00000377346	NM_005026.3	8	Ccc/Tcc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841231	15841236	+	inframe_deletion	In_Frame_Del	DEL	AGCCGG	AGCCGG	-	rs768273733		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	63	276	5	ENST00000307771.7:c.1338_1343del	p.Ser447_Arg448del	p.S447_R448del	ENST00000307771	NM_005089.3	439	AGCCGG/-																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912075	50912077	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	116	600	0	ENST00000440232.2:c.1812_1814del	p.Ser605del	p.S605del	ENST00000440232	NM_002691.3	603	ttCTCc/ttc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396590	396590	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	124	508	1	ENST00000262320.3:c.436C>T	p.Arg146Ter	p.R146*	ENST00000262320	NM_003502.3	146	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211898	36211899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775294431		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	61	603	0	ENST00000222270.7:c.1656dup	p.Lys553GlnfsTer46	p.K553Qfs*46	ENST00000222270	NM_014727.1	550	gac/gaCc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980527	1980527	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760185069		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	98	496	2	ENST00000382895.3:c.3989C>T	p.Ala1330Val	p.A1330V	ENST00000382895	NM_133330.2	1330	gCg/gTg																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402834	20402836	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-	rs746263274		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	16	54	0	ENST00000346618.3:c.385_387del	p.Gly129del	p.G129del	ENST00000346618	NM_001949.4	124	aGCGgc/agc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262480	16262480	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	36	206	0	ENST00000375759.3:c.9745C>A	p.Pro3249Thr	p.P3249T	ENST00000375759	NM_015001.2	3249	Ccc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024014	27024014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	26	94	0	ENST00000324856.7:c.1120C>A	p.Leu374Ile	p.L374I	ENST00000324856	NM_006015.4	374	Ctc/Atc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118390781	118390781	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	67	268	0	ENST00000534358.1:c.11429+2T>C		p.X3810_splice	ENST00000534358	NM_005933.3	3810																																																																																
CCND2	894	MSKCC	GRCh37	12	4398022	4398022	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	86	438	0	ENST00000261254.3:c.586A>G	p.Met196Val	p.M196V	ENST00000261254	NM_001759.3	196	Atg/Gtg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56493650	56493650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	99	328	0	ENST00000267101.3:c.2966G>T	p.Gly989Val	p.G989V	ENST00000267101	NM_001982.3	989	gGg/gTg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38064107	38064107	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	79	303	0	ENST00000250448.2:c.71A>G	p.Glu24Gly	p.E24G	ENST00000250448	NM_004496.3	24	gAg/gGg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99452078	99452078	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763660010		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	60	338	1	ENST00000268035.6:c.1412G>A	p.Arg471His	p.R471H	ENST00000268035	NM_000875.3	471	cGc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820938	3820938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	124	472	0	ENST00000262367.5:c.2513C>A	p.Pro838His	p.P838H	ENST00000262367	NM_004380.2	838	cCt/cAt																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119753	17119753	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1363880753		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	101	481	0	ENST00000285071.4:c.1241G>A	p.Arg414Gln	p.R414Q	ENST00000285071	NM_144997.5	414	cGg/cAg																																																																															
NF1	4763	MSKCC	GRCh37	17	29533376	29533376	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs147417054		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	78	211	0	ENST00000358273.4:c.1379T>C	p.Ile460Thr	p.I460T	ENST00000358273	NM_001042492.2	460	aTa/aCa																																																																															
NF1	4763	MSKCC	GRCh37	17	29652995	29652996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	121	343	0	ENST00000358273.4:c.4998dup	p.Pro1667SerfsTer15	p.P1667Sfs*15	ENST00000358273	NM_001042492.2	1665	gtt/gTtt																																																																															
NF1	4763	MSKCC	GRCh37	17	29661858	29661858	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	91	351	0	ENST00000358273.4:c.5815A>G	p.Ile1939Val	p.I1939V	ENST00000358273	NM_001042492.2	1939	Att/Gtt																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30320963	30320963	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371166327		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	168	463	1	ENST00000322652.5:c.1373G>A	p.Arg458His	p.R458H	ENST00000322652	NM_015355.2	458	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56434885	56434885	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1236934148		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	123	430	0	ENST00000407977.2:c.2252C>T	p.Thr751Ile	p.T751I	ENST00000407977		751	aCc/aTc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740708	58740708	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	115	427	0	ENST00000305921.3:c.1613T>C	p.Leu538Ser	p.L538S	ENST00000305921	NM_003620.3	538	tTa/tCa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226743	2226743	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	79	459	0	ENST00000398665.3:c.4223G>C	p.Gly1408Ala	p.G1408A	ENST00000398665	NM_032482.2	1408	gGc/gCc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291061	10291061	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377146699		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	104	405	0	ENST00000340748.4:c.410C>T	p.Thr137Met	p.T137M	ENST00000340748		137	aCg/aTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145606	11145606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61750054		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	77	449	0	ENST00000344626.4:c.3968G>A	p.Arg1323His	p.R1323H	ENST00000344626	NM_003072.3	1323	cGc/cAc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257424	19257424	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs745619777		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	136	579	0	ENST00000162023.5:c.709T>C	p.Ser237Pro	p.S237P	ENST00000162023		237	Tcc/Ccc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753390	42753390	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776319250		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	115	523	2	ENST00000222329.4:c.874G>A	p.Gly292Arg	p.G292R	ENST00000222329	NM_006494.2	292	Ggg/Agg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025871	48025871	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587781275		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	93	292	0	ENST00000234420.5:c.749T>C	p.Val250Ala	p.V250A	ENST00000234420	NM_000179.2	250	gTc/gCc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99149939	99149939	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200860936		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	43	472	0	ENST00000074304.5:c.251C>T	p.Ala84Val	p.A84V	ENST00000074304	NM_001134224.1	84	gCa/gTa																																																																															
CASP8	841	MSKCC	GRCh37	2	202151315	202151315	+	stop_lost	Nonstop_Mutation	SNP	T	T	C	rs761997594		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	107	399	0	ENST00000358485.4:c.1615T>C	p.Ter539ArgextTer88	p.*539Rext*88	ENST00000358485	NM_001080125.1	539	Tga/Cga																																																																															
BARD1	580	MSKCC	GRCh37	2	215595197	215595197	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	134	401	2	ENST00000260947.4:c.1939C>T	p.Gln647Ter	p.Q647*	ENST00000260947	NM_000465.2	647	Cag/Tag																																																																															
RAC2	5880	MSKCC	GRCh37	22	37628917	37628917	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	149	576	0	ENST00000249071.6:c.149C>A	p.Pro50Gln	p.P50Q	ENST00000249071	NM_002872.4	50	cCa/cAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163727	47163727	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1169288572		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	94	430	0	ENST00000409792.3:c.2399G>A	p.Ser800Asn	p.S800N	ENST00000409792	NM_014159.6	800	aGc/aAc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259641	89259641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	65	281	0	ENST00000336596.2:c.785G>A	p.Gly262Asp	p.G262D	ENST00000336596	NM_005233.5	262	gGc/gAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55146604	55146604	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs779246705		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	181	451	0	ENST00000257290.5:c.2278T>C	p.Ser760Pro	p.S760P	ENST00000257290	NM_006206.4	760	Tca/Cca																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356172	66356172	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	113	436	1	ENST00000273854.3:c.1325A>G	p.Glu442Gly	p.E442G	ENST00000273854	NM_004439.5	442	gAg/gGg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249499	153249499	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	114	440	0	ENST00000281708.4:c.1279T>C	p.Ser427Pro	p.S427P	ENST00000281708	NM_033632.3	427	Tca/Cca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557989	187557989	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	106	304	0	ENST00000441802.2:c.3722A>T	p.Asn1241Ile	p.N1241I	ENST00000441802	NM_005245.3	1241	aAc/aTc																																																																															
MSH3	4437	MSKCC	GRCh37	5	80037320	80037320	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs756837309		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	109	349	0	ENST00000265081.6:c.1606A>G	p.Thr536Ala	p.T536A	ENST00000265081	NM_002439.4	536	Aca/Gca																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738482	145738482	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373187237		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	140	448	1	ENST00000428558.2:c.2503G>A	p.Asp835Asn	p.D835N	ENST00000428558	NM_004260.3	835	Gac/Aac																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126684	5126684	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	88	290	0	ENST00000381652.3:c.3292A>T	p.Ile1098Phe	p.I1098F	ENST00000381652	NM_004972.3	1098	Atc/Ttc																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128434783	128434783	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1254700721		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	144	513	1	ENST00000265960.3:c.71C>T	p.Thr24Met	p.T24M	ENST00000265960	NM_001006617.1	24	aCg/aTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393677	139393677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	111	538	1	ENST00000277541.6:c.5969C>T	p.Ala1990Val	p.A1990V	ENST00000277541	NM_017617.3	1990	gCc/gTc																																																																															
ATRX	546	MSKCC	GRCh37	X	76854890	76854890	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	119	463	0	ENST00000373344.5:c.5946del	p.Lys1982AsnfsTer33	p.K1982Nfs*33	ENST00000373344	NM_000489.3	1982	aaA/aa																																																																															
BTK	695	MSKCC	GRCh37	X	100608237	100608237	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	140	533	0	ENST00000308731.7:c.1853G>T	p.Arg618Met	p.R618M	ENST00000308731	NM_000061.2	618	aGg/aTg																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29197675	29197675	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	121	440	1	ENST00000240100.2:c.519del	p.Ser174ValfsTer53	p.S174Vfs*53	ENST00000240100	NM_001394.6	173	ccC/cc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	238	455	0	ENST00000346208.3:c.1003dup	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101054	27101054	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	195	487	0	ENST00000324856.7:c.4336C>T	p.Arg1446Ter	p.R1446*	ENST00000324856	NM_006015.4	1446	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097737	27097737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	216	427	0	ENST00000324856.7:c.3326G>T	p.Arg1109Leu	p.R1109L	ENST00000324856	NM_006015.4	1109	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	286	751	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579378	7579378	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0025395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	197	696	0	ENST00000269305.4:c.309C>G	p.Tyr103Ter	p.Y103*	ENST00000269305	NM_001126112.2	103	taC/taG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	59	779	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100575	8100575	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	157	732	0	ENST00000346208.3:c.549C>A	p.Cys183Ter	p.C183*	ENST00000346208		183	tgC/tgA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431750	49431750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	78	710	1	ENST00000301067.7:c.9389C>T	p.Ser3130Phe	p.S3130F	ENST00000301067	NM_003482.3	3130	tCt/tTt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278040	18278040	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	91	794	0	ENST00000222254.8:c.1660A>G	p.Arg554Gly	p.R554G	ENST00000222254	NM_005027.3	554	Aga/Gga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549412	187549412	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	81	785	0	ENST00000441802.2:c.4706G>T	p.Gly1569Val	p.G1569V	ENST00000441802	NM_005245.3	1569	gGg/gTg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061215	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCAGCCGTTCTCGAACATGTT	GCAGCCGTTCTCGAACATGTT	-			P-0025414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	409	522	0	ENST00000250448.2:c.754_774del	p.Asn252_Cys258del	p.N252_C258del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTGC/-																																																																															
ATM	472	MSKCC	GRCh37	11	108199949	108199949	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0025414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	178	288	0	ENST00000278616.4:c.7291A>T	p.Lys2431Ter	p.K2431*	ENST00000278616	NM_000051.3	2431	Aaa/Taa																																																																															
ERF	2077	MSKCC	GRCh37	19	42752815	42752826	+	inframe_deletion	In_Frame_Del	DEL	GCGTAGCTTGAG	GCGTAGCTTGAG	-			P-0025414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1216	122	767	0	ENST00000222329.4:c.1438_1449del	p.Leu480_Arg483del	p.L480_R483del	ENST00000222329	NM_006494.2	480	CTCAAGCTACGC/-																																																																															
ATRX	546	MSKCC	GRCh37	X	76940465	76940465	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	380	385	0	ENST00000373344.5:c.628A>T	p.Ser210Cys	p.S210C	ENST00000373344	NM_000489.3	210	Agc/Tgc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455091	50455091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1422790468		P-0025468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	110	371	0	ENST00000331340.3:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000331340	NM_006060.4	213	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	200	735	1	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175756	112175756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	42	349	0	ENST00000257430.4:c.4466del	p.Leu1489TyrfsTer18	p.L1489Yfs*18	ENST00000257430	NM_000038.5	1489	Tta/ta																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390732	139390732	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	121	531	0	ENST00000277541.6:c.7459C>T	p.Gln2487Ter	p.Q2487*	ENST00000277541	NM_017617.3	2487	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0025531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	202	401	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242470	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs397517097		P-0025531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	198	364	2	ENST00000275493.2:c.2240T>C	p.Leu747Ser	p.L747S	ENST00000275493	NM_005228.3	747	tTa/tCa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745624	162745624	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765562219		P-0025531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	108	350	3	ENST00000367921.3:c.2039G>A	p.Arg680His	p.R680H	ENST00000367921	NM_006182.2	680	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0025571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	235	588	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0018982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	567	923	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49425577	49425577	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760819349		P-0018982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	512	915	1	ENST00000301067.7:c.12911C>T	p.Pro4304Leu	p.P4304L	ENST00000301067	NM_003482.3	4304	cCt/cTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584552	48584552	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0018982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	257	689	0	ENST00000342988.3:c.725C>G	p.Ser242Ter	p.S242*	ENST00000342988	NM_005359.5	242	tCa/tGa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296214	15296214	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781574783		P-0018982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	297	827	1	ENST00000263388.2:c.2150G>A	p.Arg717His	p.R717H	ENST00000263388	NM_000435.2	717	cGc/cAc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57480484	57480484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11554274		P-0018982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	243	573	2	ENST00000371085.3:c.479G>A	p.Arg160His	p.R160H	ENST00000371085	NM_000516.4	160	cGt/cAt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206888	36206888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	106	379	0	ENST00000300305.3:c.624G>T	p.Gln208His	p.Q208H	ENST00000300305		208	caG/caT																																																																															
ERG	2078	MSKCC	GRCh37	21	39755740	39755740	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747083136		P-0018982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	87	606	0	ENST00000288319.7:c.1025C>T	p.Thr342Met	p.T342M	ENST00000288319	NM_182918.3	342	aCg/aTg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117665383	117665383	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	240	427	0	ENST00000368508.3:c.4364C>G	p.Thr1455Ser	p.T1455S	ENST00000368508	NM_002944.2	1455	aCt/aGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426035	49426035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019022-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	122	813	0	ENST00000301067.7:c.12453C>A	p.Asn4151Lys	p.N4151K	ENST00000301067	NM_003482.3	4151	aaC/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578506	7578507	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCAGGTCTTGGCCAGTTGGCAAAACATCTT			P-0019022-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			598	428	1013	0	ENST00000269305.4:c.394_423dup	p.Lys132_Cys141dup	p.K132_C141dup	ENST00000269305	NM_001126112.2	132	-/AAGATGTTTTGCCAACTGGCCAAGACCTGC																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919736	96919736	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019022-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			511	140	704	0	ENST00000258439.3:c.527G>T	p.Ser176Ile	p.S176I	ENST00000258439	NM_001193304.2	176	aGc/aTc																																																																															
INHA	3623	MSKCC	GRCh37	2	220439537	220439537	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019022-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	353	753	0	ENST00000243786.2:c.390G>C	p.Gln130His	p.Q130H	ENST00000243786	NM_002191.3	130	caG/caC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	225	639	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111472	8111473	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0019068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	82	924	0	ENST00000346208.3:c.959_960del	p.Cys320SerfsTer31	p.C320Sfs*31	ENST00000346208		320	TGt/t																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434553	49434553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	70	760	1	ENST00000301067.7:c.7000C>T	p.Arg2334Trp	p.R2334W	ENST00000301067	NM_003482.3	2334	Cgg/Tgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845579	72845579	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	146	591	1	ENST00000268489.5:c.3761G>T	p.Cys1254Phe	p.C1254F	ENST00000268489	NM_006885.3	1254	tGc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			649	409	542	6	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0019077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			490	273	611	3	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939186	36939186	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			957	116	735	1	ENST00000361632.4:c.523C>A	p.Leu175Met	p.L175M	ENST00000361632		175	Ctg/Atg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81554353	81554353	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			536	154	459	16	ENST00000298171.2:c.373C>A	p.Leu125Ile	p.L125I	ENST00000298171	NM_000369.2	125	Ctc/Atc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117746744	117746744	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			467	119	427	11	ENST00000368508.3:c.76C>T	p.Gln26Ter	p.Q26*	ENST00000368508	NM_002944.2	26	Cag/Tag																																																																															
BRAF	673	MSKCC	GRCh37	7	140501351	140501351	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs387906661		P-0019077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			330	98	288	0	ENST00000288602.6:c.721A>C	p.Thr241Pro	p.T241P	ENST00000288602	NM_004333.4	241	Acg/Ccg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974740	21974765	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCACCTCCTCTACCCGACCCCGGG	CCGCACCTCCTCTACCCGACCCCGGG	-			P-0019077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			232	96	322	2	ENST00000304494.5:c.62_87del	p.Ala21GlyfsTer14	p.A21Gfs*14	ENST00000304494	NM_000077.4	21	gCCCGGGGTCGGGTAGAGGAGGTGCGG/g																																																																															
ALK	238	MSKCC	GRCh37	2	29606697	29606697	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779282861		P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	69	669	0	ENST00000389048.3:c.1183C>T	p.Arg395Cys	p.R395C	ENST00000389048	NM_004304.4	395	Cgt/Tgt																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39305278	39305278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	222	770	1	ENST00000373001.3:c.1147G>T	p.Ala383Ser	p.A383S	ENST00000373001	NM_022157.3	383	Gcc/Tcc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731083	162731083	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	76	621	1	ENST00000367921.3:c.940del	p.Glu314AsnfsTer44	p.E314Nfs*44	ENST00000367921	NM_006182.2	313	tGg/tg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445649	49445649	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	591	1042	0	ENST00000301067.7:c.1817C>G	p.Ser606Cys	p.S606C	ENST00000301067	NM_003482.3	606	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578419	7578420	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	192	673	0	ENST00000269305.4:c.510_511delinsTT	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	170	acGGag/acTTag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881620	37881620	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1196082930		P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	117	696	2	ENST00000269571.5:c.2690G>A	p.Arg897Gln	p.R897Q	ENST00000269571		897	cGg/cAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221282	1221282	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	194	815	0	ENST00000326873.7:c.806del	p.Lys269ArgfsTer18	p.K269Rfs*18	ENST00000326873	NM_000455.4	269	Aag/ag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10254614	10254614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	143	584	0	ENST00000340748.4:c.2896G>A	p.Glu966Lys	p.E966K	ENST00000340748		966	Gag/Aag																																																																															
CD79A	973	MSKCC	GRCh37	19	42383070	42383070	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	164	377	0	ENST00000221972.3:c.91del	p.Gln31ArgfsTer12	p.Q31Rfs*12	ENST00000221972	NM_021601.3	30	tgC/tg																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873092	136873092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	85	406	1	ENST00000241393.3:c.406C>A	p.Leu136Met	p.L136M	ENST00000241393	NM_003467.2	136	Ctg/Atg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419902	41419902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	99	736	3	ENST00000373198.4:c.419G>T	p.Gly140Val	p.G140V	ENST00000373198	NM_133170.3	140	gGg/gTg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38963070	38963070	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	255	478	0	ENST00000357387.3:c.1474C>G	p.Leu492Val	p.L492V	ENST00000357387	NM_152756.3	492	Ctt/Gtt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149504328	149504328	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	177	747	0	ENST00000261799.4:c.1874C>G	p.Ser625Cys	p.S625C	ENST00000261799	NM_002609.3	625	tCt/tGt																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045729	26045729	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	52	238	0	ENST00000540144.1:c.91C>G	p.Pro31Ala	p.P31A	ENST00000540144	NM_003531.2	31	Ccg/Gcg																																																																															
TEK	7010	MSKCC	GRCh37	9	27168542	27168542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	113	883	1	ENST00000380036.4:c.414C>A	p.Asn138Lys	p.N138K	ENST00000380036	NM_000459.3	138	aaC/aaA																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323234	31323234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	199	560	0	ENST00000412585.2:c.755del	p.Thr252MetfsTer45	p.T252Mfs*45	ENST00000412585	NM_005514.6	252	aCt/at																																																																															
YAP1	10413	MSKCC	GRCh37	11	102098261	102098261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	197	698	0	ENST00000282441.5:c.1225G>A	p.Val409Ile	p.V409I	ENST00000282441	NM_001130145.2	409	Gtc/Atc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56873446	56873469	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	TGAAGCTGGTGCCCCTGAATCAGG	TGAAGCTGGTGCCCCTGAATCAGG	-			P-0019153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	257	704	2	ENST00000308159.5:c.2150_2173del	p.Leu717_Glu725delinsTer	p.L717_E725delins*	ENST00000308159	NM_014669.4	717	tTGAAGCTGGTGCCCCTGAATCAGGaa/taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0019153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	1113	913	3	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29701109	29701109	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs934837854		P-0019153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	208	659	2	ENST00000358273.4:c.8456G>A	p.Ser2819Asn	p.S2819N	ENST00000358273	NM_001042492.2	2819	aGc/aAc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40481554	40481576	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGAGCTCCTCCCACATACCAAGT	GGAGCTCCTCCCACATACCAAGT	-			P-0019153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	413	672	0	ENST00000264657.5:c.1229_1233+18del		p.X410_splice	ENST00000264657	NM_139276.2	410																																																																																
BRCA1	672	MSKCC	GRCh37	17	41219635	41219637	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-	rs80358344		P-0019153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	428	733	1	ENST00000357654.3:c.5062_5064del	p.Val1688del	p.V1688del	ENST00000357654	NM_007294.3	1688	GTT/-																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968085	68968085	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	560	725	0	ENST00000288368.4:c.1114C>A	p.Gln372Lys	p.Q372K	ENST00000288368	NM_024870.2	372	Caa/Aaa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610463	10610463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	241	729	0	ENST00000171111.5:c.247G>T	p.Val83Phe	p.V83F	ENST00000171111	NM_203500.1	83	Gtc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	346	563	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118375476	118375476	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	42	466	0	ENST00000534358.1:c.8869G>C	p.Asp2957His	p.D2957H	ENST00000534358	NM_005933.3	2957	Gac/Cac																																																																															
FLT3	2322	MSKCC	GRCh37	13	28597537	28597537	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	139	1078	0	ENST00000241453.7:c.2368T>C	p.Cys790Arg	p.C790R	ENST00000241453	NM_004119.2	790	Tgc/Cgc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475028	40475028	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	31	736	0	ENST00000264657.5:c.1882A>T	p.Ile628Phe	p.I628F	ENST00000264657	NM_139276.2	628	Atc/Ttc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793298	242793298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	420	1104	0	ENST00000334409.5:c.779C>T	p.Ser260Leu	p.S260L	ENST00000334409	NM_005018.2	260	tCa/tTa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546695	9546695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	52	331	0	ENST00000353224.5:c.1327G>A	p.Gly443Arg	p.G443R	ENST00000353224	NM_177990.2	443	Gga/Aga																																																																															
SRC	6714	MSKCC	GRCh37	20	36031768	36031768	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	223	808	0	ENST00000358208.4:c.1600del	p.Glu534ArgfsTer110	p.E534Rfs*110	ENST00000358208		533	Ggg/gg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980927	40980927	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	21	464	0	ENST00000373198.4:c.1561-2A>T		p.X521_splice	ENST00000373198	NM_133170.3	521																																																																																
PHOX2B	8929	MSKCC	GRCh37	4	41749551	41749551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	106	611	1	ENST00000226382.2:c.244C>A	p.Pro82Thr	p.P82T	ENST00000226382	NM_003924.3	82	Cct/Act																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056648	26056648	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs755438887		P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	84	232	0	ENST00000343677.2:c.9G>T	p.Glu3Asp	p.E3D	ENST00000343677	NM_005319.3	3	gaG/gaT																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197388	26197388	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	127	339	0	ENST00000356476.2:c.91C>G	p.Pro31Ala	p.P31A	ENST00000356476		31	Cca/Gca																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509826	106509826	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	40	847	0	ENST00000359195.3:c.1820C>G	p.Thr607Arg	p.T607R	ENST00000359195	NM_002649.2	607	aCa/aGa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409809	139409809	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	500	1051	0	ENST00000277541.6:c.1947del	p.Cys650AlafsTer122	p.C650Afs*122	ENST00000277541	NM_017617.3	649	ccC/cc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412125	63412125	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	149	1271	0	ENST00000330258.3:c.1042G>T	p.Gly348Cys	p.G348C	ENST00000330258	NM_152424.3	348	Ggc/Tgc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0019340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	66	483	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1206165503		P-0019340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	206	889	3	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465606	99465606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	95	512	2	ENST00000268035.6:c.2431G>A	p.Glu811Lys	p.E811K	ENST00000268035	NM_000875.3	811	Gag/Aag																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115276683	115276683	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	87	690	0	ENST00000438362.2:c.776A>G	p.Tyr259Cys	p.Y259C	ENST00000438362	NM_001242891.1	259	tAt/tGt																																																																															
KDR	3791	MSKCC	GRCh37	4	55953811	55953811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	80	571	0	ENST00000263923.4:c.3625G>A	p.Asp1209Asn	p.D1209N	ENST00000263923	NM_002253.2	1209	Gac/Aac																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137527294	137527294	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	58	724	0	ENST00000367739.4:c.352G>T	p.Glu118Ter	p.E118*	ENST00000367739	NM_000416.2	118	Gaa/Taa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992750	68992750	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747373237		P-0019340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	28	779	0	ENST00000288368.4:c.1715C>T	p.Ser572Leu	p.S572L	ENST00000288368	NM_024870.2	572	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579317	7579317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	177	610	1	ENST00000269305.4:c.370T>C	p.Cys124Arg	p.C124R	ENST00000269305	NM_001126112.2	124	Tgc/Cgc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77085411	77085411	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0019410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	180	617	0	ENST00000356341.3:c.440-1G>C		p.X147_splice	ENST00000356341	NM_002576.4	147																																																																																
PIK3C2G	5288	MSKCC	GRCh37	12	18716359	18716359	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	42	594	0	ENST00000266497.5:c.3706G>C	p.Glu1236Gln	p.E1236Q	ENST00000266497		1236	Gaa/Caa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906804	32906804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs760815829		P-0019410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	55	851	2	ENST00000380152.3:c.1189C>T	p.Gln397Ter	p.Q397*	ENST00000380152		397	Caa/Taa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56862956	56862956	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	136	569	0	ENST00000308159.5:c.862G>C	p.Gly288Arg	p.G288R	ENST00000308159	NM_014669.4	288	Ggg/Cgg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71050209	71050209	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0019410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	95	382	0	ENST00000318789.4:c.976C>A	p.His326Asn	p.H326N	ENST00000318789	NM_032682.5	326	Cat/Aat																																																																															
SDHA	6389	MSKCC	GRCh37	5	251526	251526	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	123	400	0	ENST00000264932.6:c.1737C>G	p.Ile579Met	p.I579M	ENST00000264932	NM_004168.2	579	atC/atG																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	72	930	0	ENST00000346208.3:c.1003dup	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299127	15299127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	51	1068	1	ENST00000263388.2:c.1411G>A	p.Asp471Asn	p.D471N	ENST00000263388	NM_000435.2	471	Gac/Aac																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964356	70964357	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0019420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	211	450	0	ENST00000276594.2:c.1671_1672del	p.Asp557GlufsTer12	p.D557Efs*12	ENST00000276594	NM_024504.3	557	gaTCaa/gaaa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460516	8460516	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748838568		P-0019420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	354	789	0	ENST00000356435.5:c.3770C>T	p.Pro1257Leu	p.P1257L	ENST00000356435		1257	cCg/cTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0019436-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			526	35	185	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691187		P-0019436-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			469	108	257	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67569823	67569823	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1230037871		P-0019436-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	80	189	0	ENST00000274335.5:c.484C>T	p.Arg162Ter	p.R162*	ENST00000274335		162	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577098	7577098	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019436-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			468	163	277	0	ENST00000269305.4:c.840A>C	p.Arg280Ser	p.R280S	ENST00000269305	NM_001126112.2	280	agA/agC																																																																															
FLT1	2321	MSKCC	GRCh37	13	28919638	28919638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019436-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	182	241	0	ENST00000282397.4:c.2299G>T	p.Val767Leu	p.V767L	ENST00000282397	NM_002019.4	767	Gtg/Ttg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943794	9943794	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019436-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			383	211	228	0	ENST00000330684.3:c.1147C>A	p.Leu383Met	p.L383M	ENST00000330684	NM_001134407.1	383	Ctg/Atg																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1314907	1314907	+	downstream_gene_variant	3'Flank	SNP	A	A	G	rs1363162924		P-0019436-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			447	100	210	0				ENST00000381566																																																																																		
KDM5C	8242	MSKCC	GRCh37	X	53239733	53239733	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019436-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			432	164	285	0	ENST00000375401.3:c.1609G>T	p.Val537Leu	p.V537L	ENST00000375401	NM_004187.3	537	Gtg/Ttg																																																																															
HGF	3082	MSKCC	GRCh37	7	81359078	81359078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019436-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			425	82	168	0	ENST00000222390.5:c.883G>A	p.Asp295Asn	p.D295N	ENST00000222390	NM_000601.4	295	Gac/Aac																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981731	70981731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019436-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			518	38	262	0	ENST00000276594.2:c.365C>T	p.Ala122Val	p.A122V	ENST00000276594	NM_024504.3	122	gCg/gTg																																																																															
IDH2	3418	MSKCC	GRCh37	15	90630700	90630700	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019436-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			645	51	355	0	ENST00000330062.3:c.786C>G	p.Phe262Leu	p.F262L	ENST00000330062	NM_002168.2	262	ttC/ttG																																																																															
NF1	4763	MSKCC	GRCh37	17	29556281	29556281	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019436-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			567	123	246	0	ENST00000358273.4:c.2648C>A	p.Ser883Ter	p.S883*	ENST00000358273	NM_001042492.2	883	tCa/tAa																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726419	46726420	+	missense_variant	Missense_Mutation	DNP	GT	GT	AA			P-0019436-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			605	49	312	1	ENST00000371975.4:c.498_499delinsAA	p.Cys167Ser	p.C167S	ENST00000371975	NM_003579.3	166	gaGTgt/gaAAgt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48032083	48032084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019436-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			492	37	195	0	ENST00000234420.5:c.3475dup	p.Tyr1159LeufsTer5	p.Y1159Lfs*5	ENST00000234420	NM_000179.2	1158	tgt/tgTt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78857620	78857620	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019436-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			726	45	266	0	ENST00000306801.3:c.1690G>C	p.Glu564Gln	p.E564Q	ENST00000306801	NM_020761.2	564	Gag/Cag																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70982038	70982038	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019436-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			486	36	218	0	ENST00000276594.2:c.58G>C	p.Glu20Gln	p.E20Q	ENST00000276594	NM_024504.3	20	Gag/Cag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645179	86645179	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0019436-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	42	149	0	ENST00000274376.6:c.1251C>A	p.Asn417Lys	p.N417K	ENST00000274376	NM_002890.2	417	aaC/aaA																																																																															
USP8	9101	MSKCC	GRCh37	15	50769653	50769653	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0019436-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			422	28	171	0	ENST00000307179.4:c.1175C>G	p.Ser392Ter	p.S392*	ENST00000307179		392	tCa/tGa																																																																															
NF1	4763	MSKCC	GRCh37	17	29553668	29553669	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0019436-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			527	171	244	0	ENST00000358273.4:c.2217_2218delinsTT	p.Met739_Glu740delinsIleTer	p.M739_E740delinsI*	ENST00000358273	NM_001042492.2	739	atGGag/atTTag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0019460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	155	1005	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
STK19	8859	MSKCC	GRCh37	6	31948503	31948503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	84	589	0	ENST00000375331.2:c.974G>T	p.Arg325Leu	p.R325L	ENST00000375331	NM_004197.1	325	cGg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436075	49436075	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	40	506	0	ENST00000301067.7:c.5906C>A	p.Pro1969His	p.P1969H	ENST00000301067	NM_003482.3	1969	cCc/cAc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31431786	31431786	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0019460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	39	638	0	ENST00000344624.3:c.3043-1G>C		p.X1015_splice	ENST00000344624		1015																																																																																
RB1	5925	MSKCC	GRCh37	13	48934194	48934194	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	167	634	1	ENST00000267163.4:c.649C>T	p.Gln217Ter	p.Q217*	ENST00000267163	NM_000321.2	217	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0019528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	180	521	0	ENST00000269305.4:c.673-2A>C		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
FGFR2	2263	MSKCC	GRCh37	10	123263419	123263430	+	protein_altering_variant	In_Frame_Del	DEL	TGTTGGAGTTCA	TGTTGGAGTTCA	AGC			P-0019528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	101	457	1	ENST00000358487.5:c.1313_1324delinsGCT	p.Met438_Thr442delinsSerSer	p.M438_T442delinsSS	ENST00000358487	NM_000141.4	438	aTGAACTCCAACAcc/aGCTcc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436575	110436575	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	295	1006	0	ENST00000375856.3:c.1826del	p.Ala609GlyfsTer48	p.A609Gfs*48	ENST00000375856	NM_003749.2	609	gCg/gg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640737	3640737	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs777514343		P-0019528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	156	606	0	ENST00000294008.3:c.2902G>C	p.Glu968Gln	p.E968Q	ENST00000294008	NM_032444.2	968	Gag/Cag																																																																															
CDH1	999	MSKCC	GRCh37	16	68855909	68855932	+	inframe_deletion	In_Frame_Del	DEL	CCAGTTGCTACTGGAACAGGGACA	CCAGTTGCTACTGGAACAGGGACA	-			P-0019528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	419	396	1	ENST00000261769.5:c.1718_1741del	p.Pro573_Thr580del	p.P573_T580del	ENST00000261769	NM_004360.3	573	CCAGTTGCTACTGGAACAGGGACA/-																																																																															
STAT3	6774	MSKCC	GRCh37	17	40474455	40474455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	160	567	0	ENST00000264657.5:c.1946C>T	p.Ser649Leu	p.S649L	ENST00000264657	NM_139276.2	649	tCa/tTa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678793	52678823	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGAATTTGCATCCTGTCAAGATAAAATTAC	TTGAATTTGCATCCTGTCAAGATAAAATTAC	-			P-0019528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	120	357	0	ENST00000394830.3:c.814-18_826del		p.X272_splice	ENST00000394830	NM_018313.4	272																																																																																
PDGFRB	5159	MSKCC	GRCh37	5	149516600	149516600	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144923639		P-0019528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	215	825	1	ENST00000261799.4:c.11C>T	p.Pro4Leu	p.P4L	ENST00000261799	NM_002609.3	4	cCg/cTg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44920623	44920623	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	213	651	0	ENST00000377967.4:c.1384C>G	p.Gln462Glu	p.Q462E	ENST00000377967	NM_021140.2	462	Caa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	485	993	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0019552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	85	679	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
ATR	545	MSKCC	GRCh37	3	142269009	142269009	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369913351		P-0019552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	113	706	1	ENST00000350721.4:c.2941G>A	p.Val981Ile	p.V981I	ENST00000350721	NM_001184.3	981	Gtt/Att																																																																															
AXL	558	MSKCC	GRCh37	19	41726619	41726619	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750804190		P-0019552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	85	911	1	ENST00000301178.4:c.164G>A	p.Arg55Gln	p.R55Q	ENST00000301178	NM_021913.4	55	cGg/cAg																																																																															
MET	4233	MSKCC	GRCh37	7	116411882	116411938	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCTTTCTCTCTGTTTTAAGATCTGGGCAGTGAATTAGTTCGCTACGATGCAAGAG	TTTCTTTCTCTCTGTTTTAAGATCTGGGCAGTGAATTAGTTCGCTACGATGCAAGAG	-			P-0019564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	138	1182	0	ENST00000397752.3:c.2888-20_2924del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	583	1097	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956565	93956565	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	118	445	0	ENST00000369303.4:c.2671G>C	p.Asp891His	p.D891H	ENST00000369303	NM_004440.3	891	Gac/Cac																																																																															
FH	2271	MSKCC	GRCh37	1	241676991	241676991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	152	685	0	ENST00000366560.3:c.290G>T	p.Gly97Val	p.G97V	ENST00000366560	NM_000143.3	97	gGc/gTc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436369	110436369	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	674	896	1	ENST00000375856.3:c.2032A>G	p.Met678Val	p.M678V	ENST00000375856	NM_003749.2	678	Atg/Gtg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799175	88799175	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	665	1120	0	ENST00000360948.2:c.210T>A	p.Ser70Arg	p.S70R	ENST00000360948	NM_001012338.2	70	agT/agA																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934623	9934623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	422	549	0	ENST00000330684.3:c.1532C>G	p.Ser511Trp	p.S511W	ENST00000330684	NM_001134407.1	511	tCg/tGg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348135	89348135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	239	868	0	ENST00000301030.4:c.4815G>A	p.Met1605Ile	p.M1605I	ENST00000301030	NM_001256183.1	1605	atG/atA																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350087	89350087	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	225	803	0	ENST00000301030.4:c.2863C>G	p.Leu955Val	p.L955V	ENST00000301030	NM_001256183.1	955	Ctg/Gtg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980733	40980747	+	inframe_deletion	In_Frame_Del	DEL	TGGTGGCAATCCGAG	TGGTGGCAATCCGAG	-			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	116	496	0	ENST00000373198.4:c.1739_1753del	p.Thr580_Thr584del	p.T580_T584del	ENST00000373198	NM_133170.3	580	aCTCGGATTGCCACCAaa/aaa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980813	40980813	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	207	779	0	ENST00000373198.4:c.1673del	p.Pro558GlnfsTer43	p.P558Qfs*43	ENST00000373198	NM_133170.3	558	cCa/ca																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164866	36164866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	606	1092	1	ENST00000300305.3:c.1009C>T	p.Pro337Ser	p.P337S	ENST00000300305		337	Ccc/Tcc																																																																															
IRF4	3662	MSKCC	GRCh37	6	405093	405093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	363	736	0	ENST00000380956.4:c.1175C>A	p.Pro392Gln	p.P392Q	ENST00000380956	NM_001195286.1	392	cCa/cAa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450283	50450283	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	294	637	0	ENST00000331340.3:c.467A>C	p.Gln156Pro	p.Q156P	ENST00000331340	NM_006060.4	156	cAg/cCg																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346138	152346138	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1117	351	831	0	ENST00000359321.1:c.432C>G	p.Cys144Trp	p.C144W	ENST00000359321	NM_005431.1	144	tgC/tgG																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046404	69046404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	408	847	1	ENST00000288368.4:c.3877A>T	p.Ser1293Cys	p.S1293C	ENST00000288368	NM_024870.2	1293	Agc/Tgc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745581	162745581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	95	523	0	ENST00000367921.3:c.1996C>A	p.Leu666Ile	p.L666I	ENST00000367921	NM_006182.2	666	Ctt/Att																																																																															
TP53	7157	MSKCC	GRCh37	17	7576900	7576901	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	316	736	0	ENST00000269305.4:c.945dup	p.Pro316SerfsTer21	p.P316Sfs*21	ENST00000269305	NM_001126112.2	315	-/T																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246559	41246560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATTA			P-0019731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	347	801	0	ENST00000357654.3:c.984_988dup	p.Asp330ValfsTer13	p.D330Vfs*13	ENST00000357654	NM_007294.3	330	gat/gTAATGat																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923760	39923938	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTGCCTCTCCACAAAGTACTTCTCCACAGGAAGATCTTTGTCCTCTGGGGCTTCAAAGGGATCACGGTGCTTGTTTCCAACACTATACTCGCCTGGGGGAGGGGAGACAAGAGGGCATTAATGAAGCCCGAAGGTCGCCATGAGAAGGCAGGATCTGGGGAGTGCGTGGGACCACCAT	GCTGCCTCTCCACAAAGTACTTCTCCACAGGAAGATCTTTGTCCTCTGGGGCTTCAAAGGGATCACGGTGCTTGTTTCCAACACTATACTCGCCTGGGGGAGGGGAGACAAGAGGGCATTAATGAAGCCCGAAGGTCGCCATGAGAAGGCAGGATCTGGGGAGTGCGTGGGACCACCAT	-			P-0019731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	104	853	0	ENST00000378444.4:c.3239-86_3331del		p.X1080_splice	ENST00000378444	NM_001123385.1	1080																																																																																
BCOR	54880	MSKCC	GRCh37	X	39932231	39932231	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1117	288	1147	0	ENST00000378444.4:c.2368A>T	p.Asn790Tyr	p.N790Y	ENST00000378444	NM_001123385.1	790	Aac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577523	7577524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	227	641	0	ENST00000269305.4:c.757dup	p.Thr253AsnfsTer11	p.T253Nfs*11	ENST00000269305	NM_001126112.2	253	acc/aAcc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164875	36164876	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	388	871	0	ENST00000300305.3:c.999dup	p.Arg334AlafsTer266	p.R334Afs*266	ENST00000300305		333	-/G																																																																															
NSD1	64324	MSKCC	GRCh37	5	176665332	176665332	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	58	474	1	ENST00000439151.2:c.4016A>T	p.Lys1339Ile	p.K1339I	ENST00000439151	NM_022455.4	1339	aAa/aTa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508336	106508336	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	89	348	0	ENST00000359195.3:c.330C>A	p.Tyr110Ter	p.Y110*	ENST00000359195	NM_002649.2	110	taC/taA																																																																															
RXRA	6256	MSKCC	GRCh37	9	137323830	137323830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	91	790	0	ENST00000481739.1:c.1123C>T	p.Leu375Phe	p.L375F	ENST00000481739	NM_002957.4	375	Ctc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0019792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	589	697	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50488314	50488314	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	177	676	0	ENST00000394963.4:c.1228T>C	p.Ser410Pro	p.S410P	ENST00000394963	NM_003076.4	410	Tcc/Ccc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0019802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	89	804	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447394	49447394	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	93	911	0	ENST00000301067.7:c.704C>G	p.Pro235Arg	p.P235R	ENST00000301067	NM_003482.3	235	cCa/cGa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44514892	44514892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	102	540	1	ENST00000291552.4:c.355C>T	p.Arg119Cys	p.R119C	ENST00000291552	NM_006758.2	119	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0019855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	223	477	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424437	49424438	+	stop_gained	Nonsense_Mutation	DNP	CA	CA	AG			P-0019855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	322	706	4	ENST00000301067.7:c.13785_13786delinsCT	p.Gly4596Ter	p.G4596*	ENST00000301067	NM_003482.3	4595	ttTGga/ttCTga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427251	49427268	+	inframe_deletion	In_Frame_Del	DEL	TGCTGCTGCTGCTGTTGC	TGCTGCTGCTGCTGTTGC	-	rs1328650739		P-0019855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	35	532	0	ENST00000301067.7:c.11220_11237del	p.Gln3740_Gln3745del	p.Q3740_Q3745del	ENST00000301067	NM_003482.3	3740	caGCAACAGCAGCAGCAGCAc/cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579368	7579368	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	369	890	0	ENST00000269305.4:c.319del	p.Tyr107ThrfsTer16	p.Y107Tfs*16	ENST00000269305	NM_001126112.2	107	Tac/ac																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984843	11984843	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs77267737		P-0019855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	186	524	0	ENST00000353533.5:c.389T>G	p.Val130Gly	p.V130G	ENST00000353533	NM_003010.3	130	gTt/gGt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021529	31021529	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	241	609	0	ENST00000375687.4:c.1528C>A	p.Leu510Met	p.L510M	ENST00000375687	NM_015338.5	510	Ctg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0019936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	42	756	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs587781525		P-0019936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	106	851	0	ENST00000269305.4:c.842A>T	p.Asp281Val	p.D281V	ENST00000269305	NM_001126112.2	281	gAc/gTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044839	47044839	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0019936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	74	815	0	ENST00000329236.7:c.1933-2A>G		p.X645_splice	ENST00000329236	NM_001204466.1	645																																																																																
FLT4	2324	MSKCC	GRCh37	5	180039519	180039519	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1426017403		P-0019936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	46	848	0	ENST00000261937.6:c.3524G>T	p.Gly1175Val	p.G1175V	ENST00000261937	NM_182925.4	1175	gGc/gTc																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612736	228612736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	106	749	1	ENST00000366696.1:c.291C>A	p.Cys97Ter	p.C97*	ENST00000366696	NM_003493.2	97	tgC/tgA																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94194173	94194173	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1186737287		P-0019936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	34	663	0	ENST00000323929.3:c.1255A>G	p.Thr419Ala	p.T419A	ENST00000323929	NM_005591.3	419	Aca/Gca																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934644	9934644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1331671132		P-0019936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	42	426	0	ENST00000330684.3:c.1511G>A	p.Arg504Gln	p.R504Q	ENST00000330684	NM_001134407.1	504	cGg/cAg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515587	31515588	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0019936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	34	552	1	ENST00000344624.3:c.1031_1032delinsTT	p.Trp344Phe	p.W344F	ENST00000344624		344	tGG/tTT																																																																															
ATRX	546	MSKCC	GRCh37	X	76763855	76763855	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	57	779	2	ENST00000373344.5:c.7453G>T	p.Gly2485Ter	p.G2485*	ENST00000373344	NM_000489.3	2485	Gga/Tga																																																																															
ATRX	546	MSKCC	GRCh37	X	76907777	76907777	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	67	451	1	ENST00000373344.5:c.4384G>T	p.Glu1462Ter	p.E1462*	ENST00000373344	NM_000489.3	1462	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0019967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	196	834	4	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371984	55371984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	116	598	1	ENST00000297316.4:c.674C>T	p.Ser225Phe	p.S225F	ENST00000297316	NM_022454.3	225	tCc/tTc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70970878	70970878	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	36	626	0	ENST00000276594.2:c.1383C>G	p.His461Gln	p.H461Q	ENST00000276594	NM_024504.3	461	caC/caG																																																																															
MED12	9968	MSKCC	GRCh37	X	70344057	70344057	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	60	1021	0	ENST00000374080.3:c.1793T>G	p.Leu598Arg	p.L598R	ENST00000374080		598	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1131691025		P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	547	750	1	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	437	641	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23632768	23632768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	93	761	0	ENST00000261584.4:c.3028G>A	p.Glu1010Lys	p.E1010K	ENST00000261584	NM_024675.3	1010	Gag/Aag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941023	71941023	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1237449594		P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	128	1031	0	ENST00000298229.2:c.899C>T	p.Ser300Phe	p.S300F	ENST00000298229	NM_001567.3	300	tCc/tTc																																																																															
ATM	472	MSKCC	GRCh37	11	108164127	108164127	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	85	615	0	ENST00000278616.4:c.4699G>C	p.Asp1567His	p.D1567H	ENST00000278616	NM_000051.3	1567	Gac/Cac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118380765	118380765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	97	721	0	ENST00000534358.1:c.11003C>T	p.Pro3668Leu	p.P3668L	ENST00000534358	NM_005933.3	3668	cCc/cTc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864417	57864417	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	528	861	0	ENST00000228682.2:c.1895del	p.Asn632MetfsTer87	p.N632Mfs*87	ENST00000228682	NM_005269.2	632	Aat/at																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872054	35872054	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	476	650	0	ENST00000216797.5:c.559C>G	p.Leu187Val	p.L187V	ENST00000216797	NM_020529.2	187	Cta/Gta																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43705453	43705453	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	140	856	0	ENST00000382044.4:c.5169G>C	p.Gln1723His	p.Q1723H	ENST00000382044	NM_001141980.1	1723	caG/caC																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778575	3778575	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	289	762	0	ENST00000262367.5:c.6473A>T	p.Gln2158Leu	p.Q2158L	ENST00000262367	NM_004380.2	2158	cAg/cTg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646626	23646626	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749461008		P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	105	646	1	ENST00000261584.4:c.1241G>A	p.Arg414Gln	p.R414Q	ENST00000261584	NM_024675.3	414	cGa/cAa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761481	59761481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	63	541	0	ENST00000259008.2:c.2926G>A	p.Glu976Lys	p.E976K	ENST00000259008	NM_032043.2	976	Gaa/Aaa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266796	198266796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	487	805	0	ENST00000335508.6:c.2136G>T	p.Leu712Phe	p.L712F	ENST00000335508	NM_012433.2	712	ttG/ttT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47155457	47155457	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	240	654	0	ENST00000409792.3:c.4624A>T	p.Arg1542Ter	p.R1542*	ENST00000409792	NM_014159.6	1542	Aga/Tga																																																																															
MITF	4286	MSKCC	GRCh37	3	70014360	70014360	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	388	753	0	ENST00000352241.4:c.1524G>C	p.Arg508Ser	p.R508S	ENST00000352241	NM_198159.2	508	agG/agC																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967290	134967290	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	221	826	1	ENST00000398015.3:c.2629A>T	p.Thr877Ser	p.T877S	ENST00000398015	NM_004441.4	877	Acc/Tcc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149498409	149498409	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	181	757	0	ENST00000261799.4:c.2805G>C	p.Glu935Asp	p.E935D	ENST00000261799	NM_002609.3	935	gaG/gaC																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459484	50459484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	267	570	0	ENST00000331340.3:c.773C>T	p.Ser258Leu	p.S258L	ENST00000331340	NM_006060.4	258	tCa/tTa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054762	5054762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	88	571	0	ENST00000381652.3:c.814G>A	p.Val272Ile	p.V272I	ENST00000381652	NM_004972.3	272	Gta/Ata																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814758	139814758	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs779694447		P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	204	913	0	ENST00000247668.2:c.751G>T	p.Val251Leu	p.V251L	ENST00000247668	NM_021138.3	251	Gtg/Ttg																																																																															
MED12	9968	MSKCC	GRCh37	X	70352710	70352710	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	158	659	0	ENST00000374080.3:c.4431C>G	p.Ser1477Arg	p.S1477R	ENST00000374080		1477	agC/agG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0020008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			584	234	875	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			184	113	533	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP63	8626	MSKCC	GRCh37	3	189587118	189587118	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761885185		P-0020008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	8	648	1	ENST00000264731.3:c.1135C>T	p.Arg379Cys	p.R379C	ENST00000264731	NM_003722.4	379	Cgt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255280	16255280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			461	32	733	0	ENST00000375759.3:c.2545G>A	p.Glu849Lys	p.E849K	ENST00000375759	NM_015001.2	849	Gaa/Aaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256177	16256177	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			456	29	786	0	ENST00000375759.3:c.3442G>C	p.Glu1148Gln	p.E1148Q	ENST00000375759	NM_015001.2	1148	Gag/Cag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256303	16256303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			471	25	791	0	ENST00000375759.3:c.3568G>A	p.Glu1190Lys	p.E1190K	ENST00000375759	NM_015001.2	1190	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257344	16257344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			472	32	905	1	ENST00000375759.3:c.4609G>A	p.Glu1537Lys	p.E1537K	ENST00000375759	NM_015001.2	1537	Gaa/Aaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257779	16257779	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1336582924		P-0020008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	53	642	2	ENST00000375759.3:c.5044G>A	p.Glu1682Lys	p.E1682K	ENST00000375759	NM_015001.2	1682	Gaa/Aaa																																																																															
POLE	5426	MSKCC	GRCh37	12	133249241	133249241	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145370369		P-0020008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			659	49	796	3	ENST00000320574.5:c.1658G>A	p.Arg553His	p.R553H	ENST00000320574	NM_006231.2	553	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0020038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	561	627	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213912	36213912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	560	644	1	ENST00000222270.7:c.2738C>T	p.Ser913Phe	p.S913F	ENST00000222270	NM_014727.1	913	tCc/tTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151855967	151855968	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	177	459	0	ENST00000262189.6:c.11650dup	p.Thr3884AsnfsTer10	p.T3884Nfs*10	ENST00000262189	NM_170606.2	3884	acg/aAcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912656		P-0020078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	249	624	0	ENST00000269305.4:c.734G>C	p.Gly245Ala	p.G245A	ENST00000269305	NM_001126112.2	245	gGc/gCc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589698	69589698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	61	85	1	ENST00000168712.1:c.155C>T	p.Ala52Val	p.A52V	ENST00000168712	NM_002007.2	52	gCg/gTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624274	89624274	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0020078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	221	437	0	ENST00000371953.3:c.48T>G	p.Tyr16Ter	p.Y16*	ENST00000371953	NM_000314.4	16	taT/taG																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114131	115114132	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0020078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	199	520	0	ENST00000257566.3:c.1085_1086insCC	p.Ser363HisfsTer270	p.S363Hfs*270	ENST00000257566	NM_016569.3	362	aca/acCCa																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872018	35872018	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs779399614		P-0020078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	93	535	0	ENST00000216797.5:c.595G>C	p.Val199Leu	p.V199L	ENST00000216797	NM_020529.2	199	Gtg/Ctg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664873	138664902	+	inframe_deletion	In_Frame_Del	DEL	GCCGCAGCTGCTGCAGCCGCTGCGGCTGCC	GCCGCAGCTGCTGCAGCCGCTGCGGCTGCC	-	rs764243782		P-0020111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	37	149	0	ENST00000330315.3:c.663_692del	p.Ala225_Ala234del	p.A225_A234del	ENST00000330315	NM_023067.3	221	gcGGCAGCCGCAGCGGCTGCAGCAGCTGCGGCt/gct																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	921	1112	1	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913315		P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	651	1133	1	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																															
KDR	3791	MSKCC	GRCh37	4	55953894	55953894	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	194	895	1	ENST00000263923.4:c.3542C>A	p.Ser1181Ter	p.S1181*	ENST00000263923	NM_002253.2	1181	tCa/tAa																																																																															
RB1	5925	MSKCC	GRCh37	13	48919214	48919214	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	178	381	0	ENST00000267163.4:c.381-2A>G		p.X127_splice	ENST00000267163	NM_000321.2	127																																																																																
FGF4	2249	MSKCC	GRCh37	11	69588172	69588172	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs550329316		P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	555	1105	1	ENST00000168712.1:c.526G>T	p.Gly176Cys	p.G176C	ENST00000168712	NM_002007.2	176	Ggc/Tgc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844417	156844417	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	300	1324	0	ENST00000524377.1:c.1250G>T	p.Gly417Val	p.G417V	ENST00000524377	NM_002529.3	417	gGg/gTg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243727117	243727117	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs774991430		P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	203	924	0	ENST00000263826.5:c.853A>G	p.Ile285Val	p.I285V	ENST00000263826	NM_005465.4	285	Ata/Gta																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14317361	14317361	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	47	945	0	ENST00000256196.4:c.149C>G	p.Ser50Cys	p.S50C	ENST00000256196		50	tCt/tGt																																																																															
PGR	5241	MSKCC	GRCh37	11	100922173	100922173	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	164	869	1	ENST00000325455.5:c.2339C>A	p.Pro780His	p.P780H	ENST00000325455	NM_001202474.3	780	cCt/cAt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	493280	493280	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	218	1023	0	ENST00000399788.2:c.283G>C	p.Ala95Pro	p.A95P	ENST00000399788	NM_001042603.1	95	Gca/Cca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420793	49420793	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765693458		P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	482	913	1	ENST00000301067.7:c.14956C>T	p.Arg4986Cys	p.R4986C	ENST00000301067	NM_003482.3	4986	Cgc/Tgc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56490607	56490607	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	191	893	2	ENST00000267101.3:c.2251C>T	p.Gln751Ter	p.Q751*	ENST00000267101	NM_001982.3	751	Cag/Tag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060990	38060990	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1367737391		P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	112	591	0	ENST00000250448.2:c.999G>T	p.Gln333His	p.Q333H	ENST00000250448	NM_004496.3	333	caG/caT																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748681	43748681	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	311	1318	1	ENST00000382044.4:c.2125C>T	p.Gln709Ter	p.Q709*	ENST00000382044	NM_001141980.1	709	Caa/Taa																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108236	8108236	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	584	1167	1	ENST00000585124.1:c.988A>T	p.Asn330Tyr	p.N330Y	ENST00000585124	NM_004217.3	330	Aac/Tac																																																																															
CD79A	973	MSKCC	GRCh37	19	42383634	42383634	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	216	868	0	ENST00000221972.3:c.409G>T	p.Gly137Trp	p.G137W	ENST00000221972	NM_021601.3	137	Ggg/Tgg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46252698	46252698	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	191	806	0	ENST00000371998.3:c.127A>G	p.Lys43Glu	p.K43E	ENST00000371998		43	Aaa/Gaa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164860	36164872	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCGGGGAACTG	GCGCGGGGAACTG	-			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	893	1226	0	ENST00000300305.3:c.1003_1015del	p.Gln335CysfsTer255	p.Q335Cfs*255	ENST00000300305		335	CAGTTCCCCGCGCtg/tg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35875643	35875643	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	318	949	3	ENST00000303115.3:c.830C>A	p.Pro277His	p.P277H	ENST00000303115	NM_002185.3	277	cCc/cAc																																																																															
CCND3	896	MSKCC	GRCh37	6	41909223	41909223	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	566	1153	0	ENST00000372991.4:c.165C>A	p.His55Gln	p.H55Q	ENST00000372991	NM_001760.3	55	caC/caA																																																																															
CCND3	896	MSKCC	GRCh37	6	41909242	41909242	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	540	1114	0	ENST00000372991.4:c.146A>G	p.Gln49Arg	p.Q49R	ENST00000372991	NM_001760.3	49	cAg/cGg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099969	157099969	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	79	515	2	ENST00000346085.5:c.906C>A	p.Ser302Arg	p.S302R	ENST00000346085	NM_020732.3	302	agC/agA																																																																															
CARD11	84433	MSKCC	GRCh37	7	2983932	2983932	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	567	1336	2	ENST00000396946.4:c.598G>T	p.Asp200Tyr	p.D200Y	ENST00000396946	NM_032415.4	200	Gac/Tac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412727	139412727	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	150	1022	0	ENST00000277541.6:c.1117A>C	p.Asn373His	p.N373H	ENST00000277541	NM_017617.3	373	Aac/Cac																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410442	63410442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	149	560	0	ENST00000330258.3:c.2725del	p.Ser909ProfsTer67	p.S909Pfs*67	ENST00000330258	NM_152424.3	909	Tcc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0020165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	409	784	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112222	115112223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	208	426	0	ENST00000257566.3:c.1517dup	p.Leu507ProfsTer185	p.L507Pfs*185	ENST00000257566	NM_016569.3	506	ggc/ggGc																																																																															
TET2	54790	MSKCC	GRCh37	4	106196523	106196523	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TTACCG			P-0020165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	244	539	0	ENST00000380013.4:c.4856delinsTTACCG	p.Pro1619LeufsTer6	p.P1619Lfs*6	ENST00000380013	NM_001127208.2	1619	cCt/cTTACCGt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0020231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	78	493	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245332	46245333	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0020231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	181	737	0	ENST00000334344.6:c.3428_3429del	p.Val1143AlafsTer16	p.V1143Afs*16	ENST00000334344	NM_152641.2	1142	acTGtg/actg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81990368	81990368	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	154	923	0	ENST00000359376.3:c.3639G>T	p.Gln1213His	p.Q1213H	ENST00000359376	NM_002661.3	1213	caG/caT																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59876545	59876545	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748105919		P-0020231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	131	805	6	ENST00000259008.2:c.1256G>A	p.Arg419Gln	p.R419Q	ENST00000259008	NM_032043.2	419	cGg/cAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207068	1207070	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0020231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	278	1084	0	ENST00000326873.7:c.156_158del	p.Asp53del	p.D53del	ENST00000326873	NM_000455.4	52	ggGGAc/ggc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271648	15271648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1176	86	1488	0	ENST00000263388.2:c.6791C>T	p.Ser2264Leu	p.S2264L	ENST00000263388	NM_000435.2	2264	tCa/tTa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39250268	39250268	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	275	1390	0	ENST00000402219.2:c.1301G>T	p.Gly434Val	p.G434V	ENST00000402219	NM_005633.3	434	gGa/gTa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11554273		P-0020231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	14	645	0	ENST00000371085.3:c.601C>G	p.Arg201Gly	p.R201G	ENST00000371085	NM_000516.4	201	Cgt/Ggt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521428	8521428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	202	929	0	ENST00000356435.5:c.810G>T	p.Met270Ile	p.M270I	ENST00000356435		270	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0020237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	79	956	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0020306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	123	753	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029218	14029218	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41557814		P-0020306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	109	455	0	ENST00000311895.7:c.1429C>T	p.Arg477Trp	p.R477W	ENST00000311895	NM_005236.2	477	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573651	48573651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	87	715	0	ENST00000342988.3:c.235G>T	p.Asp79Tyr	p.D79Y	ENST00000342988	NM_005359.5	79	Gat/Tat																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266093	41266258	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATT	CCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATT	-			P-0020306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	82	487	0	ENST00000349496.5:c.90_241+14del		p.X30_splice	ENST00000349496	NM_001904.3	30																																																																																
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0020309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	782	724	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0020309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	21	250	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	136	776	1	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730882	40730882	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	2089	754	2	ENST00000373198.4:c.3653T>C	p.Leu1218Pro	p.L1218P	ENST00000373198	NM_133170.3	1218	cTg/cCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425799	49425805	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCGCT	TGCCGCT	-			P-0020309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	1201	621	0	ENST00000301067.7:c.12683_12689del	p.Gln4228ArgfsTer48	p.Q4228Rfs*48	ENST00000301067	NM_003482.3	4228	cAGCGGCAg/cg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30194868	30194868	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	261	618	0	ENST00000331968.5:c.277G>C	p.Gly93Arg	p.G93R	ENST00000331968	NM_002742.2	93	Ggt/Cgt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40500534	40500534	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0020309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	643	652	0	ENST00000264657.5:c.1A>G	p.Met1?	p.M1?	ENST00000264657	NM_139276.2	1	Atg/Gtg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41201203	41201203	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs397509268		P-0020309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	484	778	2	ENST00000357654.3:c.5341G>T	p.Glu1781Ter	p.E1781*	ENST00000357654	NM_007294.3	1781	Gaa/Taa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942169	17942169	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	619	677	0	ENST00000458235.1:c.2846A>G	p.Asp949Gly	p.D949G	ENST00000458235	NM_000215.3	949	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578259	7578259	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	217	923	0	ENST00000269305.4:c.590T>G	p.Val197Gly	p.V197G	ENST00000269305	NM_001126112.2	197	gTg/gGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	47	827	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577497	7577497	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0020377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	120	766	0	ENST00000269305.4:c.782+2T>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	223	1066	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0020395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	226	1363	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839952	27839952	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777522650		P-0020395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	68	1006	0	ENST00000328488.2:c.142G>A	p.Ala48Thr	p.A48T	ENST00000328488	NM_003533.2	48	Gcc/Acc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21627858	21627858	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	143	1255	0	ENST00000421138.2:c.1272C>G	p.Phe424Leu	p.F424L	ENST00000421138		424	ttC/ttG																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715625	30715625	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	64	466	0	ENST00000359013.4:c.1358A>T	p.Glu453Val	p.E453V	ENST00000359013	NM_001024847.2	453	gAa/gTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	146	463	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0020402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	16	765	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0020402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	307	1191	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0020579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	204	923	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
STK11	6794	MSKCC	GRCh37	19	1221319	1221320	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	304	1030	0	ENST00000326873.7:c.842_843insT	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	281	ccg/ccTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112344	115112344	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0020579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	72	308	1	ENST00000257566.3:c.1396A>T	p.Lys466Ter	p.K466*	ENST00000257566	NM_016569.3	466	Aag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29652920	29652920	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	136	657	0	ENST00000358273.4:c.4918G>T	p.Glu1640Ter	p.E1640*	ENST00000358273	NM_001042492.2	1640	Gaa/Taa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066472	94066472	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	95	534	0	ENST00000369303.4:c.1287G>T	p.Arg429Ser	p.R429S	ENST00000369303	NM_004440.3	429	agG/agT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0020644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	264	1217	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983784	15983784	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150513105		P-0020644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	211	844	3	ENST00000268712.3:c.3338G>A	p.Arg1113Gln	p.R1113Q	ENST00000268712	NM_006311.3	1113	cGa/cAa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686985	37686985	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774869348		P-0020644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	211	795	1	ENST00000447079.4:c.3889G>A	p.Val1297Met	p.V1297M	ENST00000447079	NM_015083.1	1297	Gtg/Atg																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47601175	47601175	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747098539		P-0020644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	149	765	0	ENST00000263735.4:c.413G>A	p.Arg138Gln	p.R138Q	ENST00000263735	NM_002354.2	138	cGa/cAa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971159	21971159	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758389471		P-0020644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	188	956	1	ENST00000304494.5:c.199G>A	p.Gly67Ser	p.G67S	ENST00000304494	NM_000077.4	67	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0020670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	253	723	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174916	112174916	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	60	378	0	ENST00000257430.4:c.3625G>T	p.Glu1209Ter	p.E1209*	ENST00000257430	NM_000038.5	1209	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	2149	1273	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0020702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	260	953	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100451	8100451	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1266983268		P-0020702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	364	1381	1	ENST00000346208.3:c.425C>T	p.Ser142Leu	p.S142L	ENST00000346208		142	tCg/tTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517733	187517733	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373442556		P-0020702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	19	285	0	ENST00000441802.2:c.12961G>A	p.Asp4321Asn	p.D4321N	ENST00000441802	NM_005245.3	4321	Gac/Aac																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729844	41729844	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs908163566		P-0020702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	155	660	0	ENST00000242208.4:c.685C>T	p.Arg229Trp	p.R229W	ENST00000242208	NM_002192.2	229	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0020702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	226	994	1	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49431445	49431445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	161	1288	0	ENST00000301067.7:c.9694G>A	p.Glu3232Lys	p.E3232K	ENST00000301067	NM_003482.3	3232	Gag/Aag																																																																															
POLE	5426	MSKCC	GRCh37	12	133220534	133220534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs778153462		P-0020702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	108	969	1	ENST00000320574.5:c.4179G>T	p.Met1393Ile	p.M1393I	ENST00000320574	NM_006231.2	1393	atG/atT																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873256	136873256	+	stop_gained	Nonsense_Mutation	SNP	G	G	C	rs1251842734		P-0020702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	78	515	0	ENST00000241393.3:c.242C>G	p.Ser81Ter	p.S81*	ENST00000241393	NM_003467.2	81	tCa/tGa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206891	36206892	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0020702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	108	510	0	ENST00000300305.3:c.620_621del	p.Arg207ProfsTer5	p.R207Pfs*5	ENST00000300305		207	cGG/c																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007410	143007410	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	41	407	1	ENST00000262992.4:c.2375-1G>A		p.X792_splice	ENST00000262992	NM_001101669.1	792																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151874365	151874365	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746319127		P-0020702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	71	809	0	ENST00000262189.6:c.8173G>A	p.Glu2725Lys	p.E2725K	ENST00000262189	NM_170606.2	2725	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	118	597	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0020730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	144	829	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241726	55241726	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767505234		P-0020730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	57	736	1	ENST00000275493.2:c.2174C>T	p.Thr725Met	p.T725M	ENST00000275493	NM_005228.3	725	aCg/aTg																																																																															
ATR	545	MSKCC	GRCh37	3	142272146	142272146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	59	744	0	ENST00000350721.4:c.2728G>A	p.Glu910Lys	p.E910K	ENST00000350721	NM_001184.3	910	Gaa/Aaa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28623782	28623782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	39	830	0	ENST00000241453.7:c.872C>T	p.Ala291Val	p.A291V	ENST00000241453	NM_004119.2	291	gCa/gTa																																																																															
RAD51	5888	MSKCC	GRCh37	15	41011095	41011095	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0020730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	36	734	0	ENST00000267868.3:c.528G>C	p.Glu176Asp	p.E176D	ENST00000267868	NM_002875.4	176	gaG/gaC																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944253	81944253	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	55	915	0	ENST00000359376.3:c.1862A>C	p.His621Pro	p.H621P	ENST00000359376	NM_002661.3	621	cAc/cCc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130353	11130353	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	50	904	3	ENST00000344626.4:c.2592C>G	p.Ile864Met	p.I864M	ENST00000344626	NM_003072.3	864	atC/atG																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661935	227661935	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	78	869	0	ENST00000305123.5:c.1520C>A	p.Ala507Asp	p.A507D	ENST00000305123	NM_005544.2	507	gCt/gAt																																																																															
VHL	7428	MSKCC	GRCh37	3	10183734	10183734	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	55	889	0	ENST00000256474.2:c.203C>G	p.Ser68Trp	p.S68W	ENST00000256474	NM_000551.3	68	tCg/tGg																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158564	26158564	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	52	834	0	ENST00000289316.2:c.167C>G	p.Ser56Cys	p.S56C	ENST00000289316	NM_138720.2	56	tCt/tGt																																																																															
XIAP	331	MSKCC	GRCh37	X	123020086	123020086	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	54	1097	1	ENST00000355640.3:c.574A>T	p.Thr192Ser	p.T192S	ENST00000355640		192	Aca/Tca																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285249	212285249	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	372	668	1	ENST00000342788.4:c.3052G>T	p.Asp1018Tyr	p.D1018Y	ENST00000342788	NM_005235.2	1018	Gat/Tat																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602473	10602473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	119	671	0	ENST00000171111.5:c.1105G>T	p.Val369Leu	p.V369L	ENST00000171111	NM_203500.1	369	Gtg/Ttg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81891885	81891885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	87	560	0	ENST00000359376.3:c.355G>T	p.Ala119Ser	p.A119S	ENST00000359376	NM_002661.3	119	Gca/Tca																																																																															
BRCA1	672	MSKCC	GRCh37	17	41219712	41219712	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A	rs80357117		P-0020766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	81	427	0	ENST00000357654.3:c.4987A>T	p.Met1663Leu	p.M1663L	ENST00000357654	NM_007294.3	1663	Atg/Ttg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207181	1207196	+	frameshift_variant	Frame_Shift_Del	DEL	ACGGGGAGGCCAACGT	ACGGGGAGGCCAACGT	-			P-0020766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	121	864	0	ENST00000326873.7:c.269_284del	p.Asn90ArgfsTer8	p.N90Rfs*8	ENST00000326873	NM_000455.4	90	aACGGGGAGGCCAACGTg/ag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922307	178922307	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	110	532	0	ENST00000263967.3:c.1076G>C	p.Gly359Ala	p.G359A	ENST00000263967	NM_006218.2	359	gGt/gCt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155046	55155046	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	105	490	2	ENST00000257290.5:c.2755G>T	p.Asp919Tyr	p.D919Y	ENST00000257290	NM_006206.4	919	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	204	994	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0020791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	195	963	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519946		P-0020791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	335	949	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0020791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	318	712	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368317	45368317	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1420438415		P-0020791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	147	618	4	ENST00000262160.6:c.1285C>T	p.Gln429Ter	p.Q429*	ENST00000262160	NM_005901.5	429	Cag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32945129	32945129	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80359104		P-0020791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	78	596	0	ENST00000380152.3:c.8524C>T	p.Arg2842Cys	p.R2842C	ENST00000380152		2842	Cgc/Tgc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473719	67473719	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	603	958	1	ENST00000327367.4:c.799G>T	p.Glu267Ter	p.E267*	ENST00000327367	NM_005902.3	267	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	52	737	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913315		P-0020823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	79	817	2	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																															
ATM	472	MSKCC	GRCh37	11	108213987	108213987	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs778269655		P-0020823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	28	436	0	ENST00000278616.4:c.8307G>A	p.Trp2769Ter	p.W2769*	ENST00000278616	NM_000051.3	2769	tgG/tgA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424552	49424552	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0020823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	30	625	0	ENST00000301067.7:c.13672-1G>T		p.X4558_splice	ENST00000301067	NM_003482.3	4558																																																																																
FLT3	2322	MSKCC	GRCh37	13	28588677	28588677	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	27	533	2	ENST00000241453.7:c.2771C>A	p.Ser924Tyr	p.S924Y	ENST00000241453	NM_004119.2	924	tCc/tAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66468023	66468023	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0020823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	15	280	0	ENST00000273854.3:c.247-1G>T		p.X83_splice	ENST00000273854	NM_004439.5	83																																																																																
CARD11	84433	MSKCC	GRCh37	7	2969661	2969661	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	51	861	2	ENST00000396946.4:c.1618G>T	p.Gly540Ter	p.G540*	ENST00000396946	NM_032415.4	540	Gga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8633319	8633319	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs778130827		P-0020823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	74	614	0	ENST00000356435.5:c.350G>T	p.Arg117Leu	p.R117L	ENST00000356435		117	cGg/cTg																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858038	152858039	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0020823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	32	478	1	ENST00000406277.2:c.576_577delinsCT	p.Val193Leu	p.V193L	ENST00000406277	NM_152274.4	192	gcGGtg/gcCTtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782329		P-0020833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	345	902	1	ENST00000269305.4:c.746G>C	p.Arg249Thr	p.R249T	ENST00000269305	NM_001126112.2	249	aGg/aCg																																																																															
RB1	5925	MSKCC	GRCh37	13	48916776	48916776	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0020833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	170	784	0	ENST00000267163.4:c.306T>A	p.Cys102Ter	p.C102*	ENST00000267163	NM_000321.2	102	tgT/tgA																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0020837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	382	524	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519998		P-0020837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	336	967	1	ENST00000269305.4:c.581T>C	p.Leu194Pro	p.L194P	ENST00000269305	NM_001126112.2	194	cTt/cCt																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175836	24175837	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0020837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	331	963	1	ENST00000263121.7:c.1066_1067del	p.Leu356AspfsTer4	p.L356Dfs*4	ENST00000263121	NM_003073.3	355	aCT/a																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67196640	67196640	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	46	812	1	ENST00000312629.5:c.169G>T	p.Val57Phe	p.V57F	ENST00000312629	NM_003952.2	57	Gtt/Ttt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912711	32912711	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	355	635	0	ENST00000380152.3:c.4219G>C	p.Glu1407Gln	p.E1407Q	ENST00000380152		1407	Gaa/Caa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2098728	2098728	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1159	85	927	0	ENST00000219476.3:c.112T>G	p.Phe38Val	p.F38V	ENST00000219476	NM_000548.3	38	Ttt/Gtt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967993	93967993	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	56	607	0	ENST00000369303.4:c.1934G>C	p.Gly645Ala	p.G645A	ENST00000369303	NM_004440.3	645	gGt/gCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020845-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			581	253	532	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245449	153245449	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020845-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	435	649	0	ENST00000281708.4:c.1742A>C	p.Gln581Pro	p.Q581P	ENST00000281708	NM_033632.3	581	cAg/cCg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020845-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	336	442	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482607	56482607	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020845-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			870	406	747	1	ENST00000267101.3:c.1064C>A	p.Thr355Asn	p.T355N	ENST00000267101	NM_001982.3	355	aCc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578493	7578502	+	frameshift_variant	Frame_Shift_Del	DEL	CACAGCTGCA	CACAGCTGCA	-			P-0020845-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			784	829	1148	0	ENST00000269305.4:c.428_437del	p.Val143GlyfsTer24	p.V143Gfs*24	ENST00000269305	NM_001126112.2	143	gTGCAGCTGTGg/gg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374941	45374944	+	frameshift_variant	Frame_Shift_Del	DEL	CCAT	CCAT	-			P-0020845-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			438	485	581	0	ENST00000262160.6:c.899_902del	p.Asp300AlafsTer13	p.D300Afs*13	ENST00000262160	NM_005901.5	300	gATGGc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1204	109	744	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587780070		P-0020861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	105	698	0	ENST00000269305.4:c.535C>A	p.His179Asn	p.H179N	ENST00000269305	NM_001126112.2	179	Cat/Aat																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206652386	206652386	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781784265		P-0020861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1269	86	738	0	ENST00000367120.3:c.1093G>A	p.Val365Ile	p.V365I	ENST00000367120	NM_014002.3	365	Gtc/Atc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458261	120458262	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0020861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	151	710	0	ENST00000256646.2:c.7083_7084delinsAT	p.Asp2362Tyr	p.D2362Y	ENST00000256646	NM_024408.3	2361	caGGac/caATac																																																																															
ATM	472	MSKCC	GRCh37	11	108150217	108150217	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0020861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	49	580	0	ENST00000278616.4:c.3285-1G>T		p.X1095_splice	ENST00000278616	NM_000051.3	1095																																																																																
IRS2	8660	MSKCC	GRCh37	13	110435850	110435850	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	129	534	0	ENST00000375856.3:c.2551G>T	p.Ala851Ser	p.A851S	ENST00000375856	NM_003749.2	851	Gcc/Tcc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81606168	81606168	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	148	629	0	ENST00000298171.2:c.838C>G	p.Pro280Ala	p.P280A	ENST00000298171	NM_000369.2	280	Cca/Gca																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712518	43712518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1233	123	814	1	ENST00000382044.4:c.4666G>A	p.Glu1556Lys	p.E1556K	ENST00000382044	NM_001141980.1	1556	Gag/Aag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420311	88420311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	86	561	2	ENST00000360948.2:c.2375C>T	p.Pro792Leu	p.P792L	ENST00000360948	NM_001012338.2	792	cCc/cTc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50828213	50828213	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	112	645	1	ENST00000398568.2:c.2551A>T	p.Ile851Phe	p.I851F	ENST00000398568	NM_001042412.1	851	Atc/Ttc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9543537	9543537	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0020861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	101	611	0	ENST00000353224.5:c.1616+1G>T		p.X539_splice	ENST00000353224	NM_177990.2	539																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153253748	153253748	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0020861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	46	461	0	ENST00000281708.4:c.985G>T	p.Gly329Trp	p.G329W	ENST00000281708	NM_033632.3	329	Ggg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	163	396	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38962603	38962603	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	332	673	0	ENST00000357387.3:c.1652T>A	p.Ile551Lys	p.I551K	ENST00000357387	NM_152756.3	551	aTa/aAa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	102	898	1	ENST00000347630.2:c.392G>T	p.Trp131Leu	p.W131L	ENST00000347630	NM_001007230.1	131	tGg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0020926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	482	1050	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0020926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	9	719	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778425	3778436	+	inframe_deletion	In_Frame_Del	DEL	TGTTGCTGCTGC	TGTTGCTGCTGC	-	rs778678603		P-0020926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	100	1134	0	ENST00000262367.5:c.6612_6623del	p.Gln2213_Gln2216del	p.Q2213_Q2216del	ENST00000262367	NM_004380.2	2204	caGCAGCAGCAACAa/caa																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2494588	2494588	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs377222246		P-0020926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	60	870	0	ENST00000355716.4:c.728G>A	p.Arg243Gln	p.R243Q	ENST00000355716	NM_003820.2	243	cGg/cAg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200918	67200918	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0020926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	88	1009	0	ENST00000312629.5:c.906G>C	p.Lys302Asn	p.K302N	ENST00000312629	NM_003952.2	302	aaG/aaC																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597444	10597444	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866539542		P-0020926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	305	1215	2	ENST00000171111.5:c.1759G>A	p.Asp587Asn	p.D587N	ENST00000171111	NM_203500.1	587	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0020951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	235	883	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	76	539	0	ENST00000346208.3:c.1300dup	p.His434ProfsTer73	p.H434Pfs*73	ENST00000346208		433	cac/caCc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685315	89685315	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0020951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	131	618	0	ENST00000371953.3:c.209+1G>C		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																																
LYN	4067	MSKCC	GRCh37	8	56863342	56863342	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0020951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	81	465	0	ENST00000519728.1:c.486A>C	p.Lys162Asn	p.K162N	ENST00000519728	NM_002350.3	162	aaA/aaC																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	141	514	0	ENST00000257430.4:c.4037C>G	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tGa																																																																															
ATM	472	MSKCC	GRCh37	11	108129749	108129749	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs780619951		P-0021078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	155	1022	0	ENST00000278616.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000278616	NM_000051.3	805	Cga/Tga																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136976	64136976	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs779990907		P-0021078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	172	896	5	ENST00000334205.4:c.1487G>T	p.Arg496Leu	p.R496L	ENST00000334205	NM_003942.2	496	cGc/cTc																																																																															
ATM	472	MSKCC	GRCh37	11	108192108	108192108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	140	1012	0	ENST00000278616.4:c.6533C>A	p.Ala2178Asp	p.A2178D	ENST00000278616	NM_000051.3	2178	gCc/gAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118848	70119119	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGCCCCGAGCAGACTTCTGAACGAGAGCGAGAAGCGGCCCTTCGTGGAGGAGGCGGAGCGGCTGCGCGTGCAGCACAAGAAGGACCACCCGGATTACAAGTACCAGCCGCGGCGGAGGAAGTCGGTGAAGAACGGGCAGGCGGAGGCAGAGGAGGCCACGGAGCAGACGCACATCTCCCCCAACGCCATCTTCAAGGCGCTGCAGGCCGACTCGCCACACTCCTCCTCCGGCATGAGCGAGGTGCACTCCCCCGGCGAGCACTCGGGTGAGT	CGCCCCGAGCAGACTTCTGAACGAGAGCGAGAAGCGGCCCTTCGTGGAGGAGGCGGAGCGGCTGCGCGTGCAGCACAAGAAGGACCACCCGGATTACAAGTACCAGCCGCGGCGGAGGAAGTCGGTGAAGAACGGGCAGGCGGAGGCAGAGGAGGCCACGGAGCAGACGCACATCTCCCCCAACGCCATCTTCAAGGCGCTGCAGGCCGACTCGCCACACTCCTCCTCCGGCATGAGCGAGGTGCACTCCCCCGGCGAGCACTCGGGTGAGT	-			P-0021078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	16	524	0	ENST00000245479.2:c.432-6_685+12del		p.X144_splice	ENST00000245479	NM_000346.3	144																																																																																
MST1	4485	MSKCC	GRCh37	3	49725321	49725321	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372289594		P-0021078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	144	747	1	ENST00000449682.2:c.104C>T	p.Ser35Leu	p.S35L	ENST00000449682	NM_020998.3	35	tCg/tTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55214410	55214410	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	151	1031	0	ENST00000275493.2:c.536A>G	p.Asp179Gly	p.D179G	ENST00000275493	NM_005228.3	179	gAc/gGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0021102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	198	899	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0021102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	118	1091	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557647	21557647	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	77	1134	0	ENST00000382592.4:c.2198A>G	p.Tyr733Cys	p.Y733C	ENST00000382592	NM_014572.2	733	tAc/tGc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123224545	123224545	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	77	516	0	ENST00000218089.9:c.3398G>T	p.Arg1133Leu	p.R1133L	ENST00000218089	NM_001042749.1	1133	cGg/cTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0021105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	94	862	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	115	1078	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29107994	29107994	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779322187		P-0021105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	125	763	0	ENST00000328354.6:c.695G>A	p.Gly232Glu	p.G232E	ENST00000328354	NM_007194.3	232	gGa/gAa																																																																															
VHL	7428	MSKCC	GRCh37	3	10183813	10183813	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	81	992	0	ENST00000256474.2:c.282G>T	p.Glu94Asp	p.E94D	ENST00000256474	NM_000551.3	94	gaG/gaT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041425	47041425	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	97	957	0	ENST00000329236.7:c.1535del	p.Tyr512LeufsTer114	p.Y512Lfs*114	ENST00000329236	NM_001204466.1	512	tAt/tt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0021173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	1328	993	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs780442292		P-0021173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	208	1458	0	ENST00000269305.4:c.401T>G	p.Phe134Cys	p.F134C	ENST00000269305	NM_001126112.2	134	tTt/tGt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279766	46279766	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	54	943	0	ENST00000371998.3:c.3692G>C	p.Arg1231Thr	p.R1231T	ENST00000371998		1231	aGa/aCa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64126717	64126717	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	32	709	0	ENST00000334205.4:c.10G>C	p.Glu4Gln	p.E4Q	ENST00000334205	NM_003942.2	4	Gag/Cag																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31387115	31387115	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	50	1046	0	ENST00000328111.2:c.1740G>C	p.Leu580Phe	p.L580F	ENST00000328111	NM_006892.3	580	ttG/ttC																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680989	30680989	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	64	984	0	ENST00000376406.3:c.730G>C	p.Glu244Gln	p.E244Q	ENST00000376406	NM_014641.2	244	Gag/Cag																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683572	162683572	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	37	729	0	ENST00000366898.1:c.397C>G	p.Pro133Ala	p.P133A	ENST00000366898	NM_004562.2	133	Cca/Gca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151842368	151842368	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	84	286	0	ENST00000262189.6:c.14044G>T	p.Glu4682Ter	p.E4682*	ENST00000262189	NM_170606.2	4682	Gag/Tag																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38274925	38274929	+	frameshift_variant	Frame_Shift_Del	DEL	GTTGC	GTTGC	-			P-0021173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	254	1351	0	ENST00000425967.3:c.1651_1655del	p.Ala551ArgfsTer21	p.A551Rfs*21	ENST00000425967	NM_001174067.1	551	GCAACa/a																																																																															
TEK	7010	MSKCC	GRCh37	9	27197363	27197363	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1283376594		P-0021173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	51	1042	0	ENST00000380036.4:c.1675C>G	p.Leu559Val	p.L559V	ENST00000380036	NM_000459.3	559	Cta/Gta																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650448	48650448	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781904528		P-0021173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	63	1419	5	ENST00000376670.3:c.418C>T	p.Arg140Trp	p.R140W	ENST00000376670	NM_002049.3	140	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0021201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	246	520	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692922	89692922	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201044		P-0021201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	165	595	0	ENST00000371953.3:c.406T>C	p.Cys136Arg	p.C136R	ENST00000371953	NM_000314.4	136	Tgt/Cgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519938		P-0021201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	107	394	1	ENST00000263967.3:c.1034A>T	p.Asn345Ile	p.N345I	ENST00000263967	NM_006218.2	345	aAt/aTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952052	178952052	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	104	492	0	ENST00000263967.3:c.3107T>C	p.Leu1036Ser	p.L1036S	ENST00000263967	NM_006218.2	1036	tTg/tCg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71945331	71945331	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	58	802	0	ENST00000298229.2:c.2219C>G	p.Ser740Ter	p.S740*	ENST00000298229	NM_001567.3	740	tCa/tGa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984734	11984735	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	130	303	1	ENST00000353533.5:c.281dup	p.His94GlnfsTer38	p.H94Qfs*38	ENST00000353533	NM_003010.3	94	cac/cAac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952064	178952064	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	95	465	0	ENST00000263967.3:c.3119T>C	p.Met1040Thr	p.M1040T	ENST00000263967	NM_006218.2	1040	aTg/aCg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0021253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	70	720	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
WT1	7490	MSKCC	GRCh37	11	32450105	32450105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1190263054		P-0021262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	52	829	0	ENST00000332351.3:c.707C>T	p.Ala236Val	p.A236V	ENST00000332351	NM_024426.4	236	gCg/gTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519936		P-0021271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	127	502	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																																																															
POLE	5426	MSKCC	GRCh37	12	133249338	133249338	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	205	932	0	ENST00000320574.5:c.1561G>T	p.Glu521Ter	p.E521*	ENST00000320574	NM_006231.2	521	Gag/Tag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066937	30066937	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771413120		P-0021271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	114	489	0	ENST00000331968.5:c.2194C>T	p.Arg732Trp	p.R732W	ENST00000331968	NM_002742.2	732	Cgg/Tgg																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519912		P-0021282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	63	426	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																															
MGA	23269	MSKCC	GRCh37	15	41961332	41961332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	16	526	0	ENST00000219905.7:c.240del	p.Asp80GlufsTer16	p.D80Efs*16	ENST00000219905	NM_001164273.1	80	gaT/ga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281193	15281193	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	68	1183	0	ENST00000263388.2:c.5063C>G	p.Ser1688Cys	p.S1688C	ENST00000263388	NM_000435.2	1688	tCt/tGt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	154	530	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576900	7576901	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	635	833	0	ENST00000269305.4:c.945_946del	p.Gln317AlafsTer19	p.Q317Afs*19	ENST00000269305	NM_001126112.2	315	tcTCcc/tccc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs80338963		P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	179	515	1	ENST00000342988.3:c.1081C>A	p.Arg361Ser	p.R361S	ENST00000342988	NM_005359.5	361	Cgc/Agc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	438183	438183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	135	406	0	ENST00000399788.2:c.1786C>T	p.Arg596Cys	p.R596C	ENST00000399788	NM_001042603.1	596	Cgt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108170608	108170608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	100	433	0	ENST00000278616.4:c.5173G>T	p.Asp1725Tyr	p.D1725Y	ENST00000278616	NM_000051.3	1725	Gat/Tat																																																																															
RECQL	5965	MSKCC	GRCh37	12	21636390	21636390	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	235	937	1	ENST00000421138.2:c.620C>A	p.Ala207Asp	p.A207D	ENST00000421138		207	gCc/gAc																																																																															
CD276	80381	MSKCC	GRCh37	15	73996231	73996231	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1186699933		P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	147	393	1	ENST00000318443.5:c.965A>G	p.Asn322Ser	p.N322S	ENST00000318443	NM_001024736.1	322	aAt/aGt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99440093	99440093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	423	690	0	ENST00000268035.6:c.1061C>T	p.Thr354Ile	p.T354I	ENST00000268035	NM_000875.3	354	aCc/aTc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99486150	99486150	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	181	488	0	ENST00000268035.6:c.3458-2A>G		p.X1153_splice	ENST00000268035	NM_000875.3	1153																																																																																
ALOX12B	242	MSKCC	GRCh37	17	7979992	7979992	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1342884275		P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	338	777	0	ENST00000319144.4:c.1345G>C	p.Gly449Arg	p.G449R	ENST00000319144	NM_001139.2	449	Ggg/Cgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448315	56448426	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCTCCAGCTTGACGATGCTGATGAATCCAGGCTCCAGATTGTCGTCATCACTGGCATTGCACAGGTACAGCGGGTGGGACTGCAGAGAGAGACAGACTTGGGTTAGGGAGG	CTCTCCAGCTTGACGATGCTGATGAATCCAGGCTCCAGATTGTCGTCATCACTGGCATTGCACAGGTACAGCGGGTGGGACTGCAGAGAGAGACAGACTTGGGTTAGGGAGG	-			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	143	888	0	ENST00000407977.2:c.253-32_332del		p.X85_splice	ENST00000407977		85																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5212439	5212439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150241840		P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	416	931	3	ENST00000357368.4:c.4678G>A	p.Val1560Met	p.V1560M	ENST00000357368	NM_002850.3	1560	Gtg/Atg																																																																															
CASP8	841	MSKCC	GRCh37	2	202123022	202123022	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781595738		P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	148	607	0	ENST00000358485.4:c.68C>T	p.Pro23Leu	p.P23L	ENST00000358485	NM_001080125.1	23	cCc/cTc																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45657031	45657031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	270	638	0	ENST00000407780.3:c.125G>A	p.Gly42Glu	p.G42E	ENST00000407780	NM_001283052.1	42	gGa/gAa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157505404	157505406	+	frameshift_variant	Frame_Shift_Del	DEL	CTA	CTA	TT			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	179	556	1	ENST00000346085.5:c.3385_3387delinsTT	p.Asn1130ThrfsTer12	p.N1130Tfs*12	ENST00000346085	NM_020732.3	1129	CTA/TT																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370889	55370917	+	frameshift_variant	Frame_Shift_Del	DEL	GCGAGTCCCGTATCCGGCGGCCGATGAAC	GCGAGTCCCGTATCCGGCGGCCGATGAAC	-			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	309	768	0	ENST00000297316.4:c.193_221del	p.Glu65PhefsTer6	p.E65Ffs*6	ENST00000297316	NM_022454.3	64	gGCGAGTCCCGTATCCGGCGGCCGATGAAC/g																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371656	55372034	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTTCGTGGAGGAGGCAGAGCGGCTGCGCGTGCAGCACATGCAGGACCACCCCAACTACAAGTACCGGCCGCGGCGGCGCAAGCAGGTGAAGCGGCTGAAGCGGGTGGAGGGCGGCTTCCTGCACGGCCTGGCTGAGCCGCAGGCGGCCGCGCTGGGCCCCGAGGGCGGCCGCGTGGCCATGGACGGCCTGGGCCTCCAGTTCCCCGAGCAGGGCTTCCCCGCCGGCCCGCCGCTGCTGCCTCCGCACATGGGCGGCCACTACCGCGACTGCCAGAGTCTGGGCGCGCCTCCGCTCGACGGCTACCCGTTGCCCACGCCCGACACGTCCCCGCTGGACGGCGTGGACCCCGACCCGGCTTTCTTCGCCGCCCCGATGC	CCCTTCGTGGAGGAGGCAGAGCGGCTGCGCGTGCAGCACATGCAGGACCACCCCAACTACAAGTACCGGCCGCGGCGGCGCAAGCAGGTGAAGCGGCTGAAGCGGGTGGAGGGCGGCTTCCTGCACGGCCTGGCTGAGCCGCAGGCGGCCGCGCTGGGCCCCGAGGGCGGCCGCGTGGCCATGGACGGCCTGGGCCTCCAGTTCCCCGAGCAGGGCTTCCCCGCCGGCCCGCCGCTGCTGCCTCCGCACATGGGCGGCCACTACCGCGACTGCCAGAGTCTGGGCGCGCCTCCGCTCGACGGCTACCCGTTGCCCACGCCCGACACGTCCCCGCTGGACGGCGTGGACCCCGACCCGGCTTTCTTCGCCGCCCCGATGC	-			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	286	903	0	ENST00000297316.4:c.348_726del	p.Phe117GlyfsTer144	p.F117Gfs*144	ENST00000297316	NM_022454.3	116	CCCTTCGTGGAGGAGGCAGAGCGGCTGCGCGTGCAGCACATGCAGGACCACCCCAACTACAAGTACCGGCCGCGGCGGCGCAAGCAGGTGAAGCGGCTGAAGCGGGTGGAGGGCGGCTTCCTGCACGGCCTGGCTGAGCCGCAGGCGGCCGCGCTGGGCCCCGAGGGCGGCCGCGTGGCCATGGACGGCCTGGGCCTCCAGTTCCCCGAGCAGGGCTTCCCCGCCGGCCCGCCGCTGCTGCCTCCGCACATGGGCGGCCACTACCGCGACTGCCAGAGTCTGGGCGCGCCTCCGCTCGACGGCTACCCGTTGCCCACGCCCGACACGTCCCCGCTGGACGGCGTGGACCCCGACCCGGCTTTCTTCGCCGCCCCGATGCcc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0021314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	418	886	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185184646	185184646	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	150	555	1	ENST00000265026.3:c.1538G>T	p.Gly513Val	p.G513V	ENST00000265026	NM_004721.4	513	gGg/gTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11307696	11307696	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	159	709	0	ENST00000361445.4:c.1211C>G	p.Pro404Arg	p.P404R	ENST00000361445	NM_004958.3	404	cCt/cGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830059	72830059	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	219	841	0	ENST00000268489.5:c.6522A>C	p.Gln2174His	p.Q2174H	ENST00000268489	NM_006885.3	2174	caA/caC																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101947	11101947	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	269	963	0	ENST00000344626.4:c.1367T>C	p.Leu456Pro	p.L456P	ENST00000344626	NM_003072.3	456	cTg/cCg																																																																															
ATR	545	MSKCC	GRCh37	3	142185225	142185225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	306	776	1	ENST00000350721.4:c.6838C>T	p.His2280Tyr	p.H2280Y	ENST00000350721	NM_001184.3	2280	Cat/Tat																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182683451	182683451	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	381	691	0	ENST00000292782.4:c.94C>G	p.Gln32Glu	p.Q32E	ENST00000292782	NM_020640.2	32	Caa/Gaa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178553	32178575	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCATGCAGGTGGCCCCGTTCT	GGCCATGCAGGTGGCCCCGTTCT	-			P-0021314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	155	721	0	ENST00000375023.3:c.2819_2841del	p.Gln940ProfsTer57	p.Q940Pfs*57	ENST00000375023	NM_004557.3	940	cAGAACGGGGCCACCTGCATGGCC/c																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0021351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	604	692	2	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	423	828	15	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245399	153245399	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	339	882	3	ENST00000281708.4:c.1792A>C	p.Asn598His	p.N598H	ENST00000281708	NM_033632.3	598	Aat/Cat																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163807	32163807	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751250725		P-0021351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	366	861	0	ENST00000375023.3:c.5419G>A	p.Ala1807Thr	p.A1807T	ENST00000375023	NM_004557.3	1807	Gct/Act																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045969	47045969	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	354	985	5	ENST00000329236.7:c.2530A>G	p.Met844Val	p.M844V	ENST00000329236	NM_001204466.1	844	Atg/Gtg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266068	41266098	+	protein_altering_variant	In_Frame_Del	DEL	TTAGTCACTGGCAGCAACAGTCTTACCTGGA	TTAGTCACTGGCAGCAACAGTCTTACCTGGA	G			P-0021351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	209	454	4	ENST00000349496.5:c.65_95delinsG	p.Val22_Asp32delinsGly	p.V22_D32delinsG	ENST00000349496	NM_001904.3	22	gTTAGTCACTGGCAGCAACAGTCTTACCTGGAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0021375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	275	1163	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767342		P-0021375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	79	824	0	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087558	27087558	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	342	1021	0	ENST00000324856.7:c.2132C>G	p.Ser711Ter	p.S711*	ENST00000324856	NM_006015.4	711	tCa/tGa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600420	10600420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	276	1172	3	ENST00000171111.5:c.1435G>A	p.Asp479Asn	p.D479N	ENST00000171111	NM_203500.1	479	Gac/Aac																																																																															
RET	5979	MSKCC	GRCh37	10	43597993	43597993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	222	1128	1	ENST00000355710.3:c.541C>T	p.Pro181Ser	p.P181S	ENST00000355710	NM_020975.4	181	Ccc/Tcc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90627554	90627554	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	241	985	0	ENST00000330062.3:c.1303A>G	p.Thr435Ala	p.T435A	ENST00000330062	NM_002168.2	435	Acg/Gcg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61725840	61725840	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	93	815	0	ENST00000401558.2:c.727G>C	p.Glu243Gln	p.E243Q	ENST00000401558	NM_003400.3	243	Gag/Cag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0021421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	246	647	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	595	743	3	ENST00000269305.4:c.569del	p.Pro190LeufsTer57	p.P190Lfs*57	ENST00000269305	NM_001126112.2	190	cCt/ct																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435487	110435487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1420	427	853	6	ENST00000375856.3:c.2914C>T	p.Arg972Trp	p.R972W	ENST00000375856	NM_003749.2	972	Cgg/Tgg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943760	9943760	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	284	674	0	ENST00000330684.3:c.1181A>T	p.Lys394Met	p.K394M	ENST00000330684	NM_001134407.1	394	aAg/aTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437558	56437558	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	301	804	2	ENST00000407977.2:c.904T>C	p.Trp302Arg	p.W302R	ENST00000407977		302	Tgg/Cgg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12633242	12633242	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	128	797	0	ENST00000251849.4:c.1158A>T	p.Gln386His	p.Q386H	ENST00000251849	NM_002880.3	386	caA/caT																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178500	56178500	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778769478		P-0021421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	137	358	3	ENST00000399503.3:c.3473C>T	p.Pro1158Leu	p.P1158L	ENST00000399503	NM_005921.1	1158	cCt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0021445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	125	742	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233286	69233288	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-	rs1434404181		P-0021445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	17	332	0	ENST00000462284.1:c.1156_1158del	p.Asp386del	p.D386del	ENST00000462284	NM_002392.5	384	aATGat/aat																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871751	35871751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	28	547	0	ENST00000216797.5:c.755C>T	p.Ser252Phe	p.S252F	ENST00000216797	NM_020529.2	252	tCt/tTt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633144	3633144	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771178344		P-0021445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	37	776	2	ENST00000294008.3:c.5107G>A	p.Val1703Met	p.V1703M	ENST00000294008	NM_032444.2	1703	Gtg/Atg																																																																															
LYN	4067	MSKCC	GRCh37	8	56863267	56863267	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	27	609	0	ENST00000519728.1:c.411G>C	p.Lys137Asn	p.K137N	ENST00000519728	NM_002350.3	137	aaG/aaC																																																																															
MED12	9968	MSKCC	GRCh37	X	70357070	70357070	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773713291		P-0021445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	97	798	0	ENST00000374080.3:c.5585G>A	p.Arg1862His	p.R1862H	ENST00000374080		1862	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	118	471	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0021482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	218	931	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	172	844	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	76	571	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857449	9857449	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774419037		P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	59	606	0	ENST00000330684.3:c.3952C>T	p.Arg1318Trp	p.R1318W	ENST00000330684	NM_001134407.1	1318	Cgg/Tgg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933367	39933367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754579483		P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	186	400	2	ENST00000378444.4:c.1232G>A	p.Arg411Gln	p.R411Q	ENST00000378444	NM_001123385.1	411	cGg/cAg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436576	110436576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	168	817	3	ENST00000375856.3:c.1825G>A	p.Ala609Thr	p.A609T	ENST00000375856	NM_003749.2	609	Gcg/Acg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711311	114711311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	106	512	0	ENST00000543371.1:c.326C>T	p.Pro109Leu	p.P109L	ENST00000543371	NM_001198531.1	109	cCc/cTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591921	48591921	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	118	556	0	ENST00000342988.3:c.1084T>G	p.Phe362Val	p.F362V	ENST00000342988	NM_005359.5	362	Ttt/Gtt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210477	5210478	+	splice_donor_variant,intron_variant	Splice_Site	DNP	CA	CA	TC			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	51	642	1	ENST00000357368.4:c.5487+2_5487+3delinsGA		p.X1829_splice	ENST00000357368	NM_002850.3	1829																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5214624	5214624	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	151	917	0	ENST00000357368.4:c.4442A>C	p.Glu1481Ala	p.E1481A	ENST00000357368	NM_002850.3	1481	gAg/gCg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41514500	41514501	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1155	74	746	1	ENST00000373198.4:c.160_161delinsCT	p.Trp54Leu	p.W54L	ENST00000373198	NM_133170.3	54	TGg/CTg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12650279	12650279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	133	762	0	ENST00000251849.4:c.567C>A	p.Asn189Lys	p.N189K	ENST00000251849	NM_002880.3	189	aaC/aaA																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670699	134670699	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	105	660	0	ENST00000398015.3:c.610G>T	p.Ala204Ser	p.A204S	ENST00000398015	NM_004441.4	204	Gca/Tca																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162950	38162951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	133	620	0	ENST00000317025.8:c.2255dup	p.Cys752TrpfsTer5	p.C752Wfs*5	ENST00000317025	NM_023034.1	752	tgt/tgGt																																																																															
RAD21	5885	MSKCC	GRCh37	8	117870674	117870674	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	334	620	1	ENST00000297338.2:c.398T>A	p.Phe133Tyr	p.F133Y	ENST00000297338	NM_006265.2	133	tTc/tAc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738385	145738386	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	147	753	0	ENST00000428558.2:c.2599dup	p.Ala867GlyfsTer17	p.A867Gfs*17	ENST00000428558	NM_004260.3	867	gcc/gGcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0021501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	103	1107	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0021501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	91	1062	5	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11177083	11177084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	98	897	0	ENST00000361445.4:c.6993dup	p.Tyr2332ValfsTer8	p.Y2332Vfs*8	ENST00000361445	NM_004958.3	2331	-/G																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971083	21971093	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAGGAAGCC	TCCAGGAAGCC	GGCT			P-0021501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	33	780	2	ENST00000304494.5:c.265_275delinsAGCC	p.Gly89SerfsTer55	p.G89Sfs*55	ENST00000304494	NM_000077.4	89	GGCTTCCTGGAc/AGCCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0021573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	155	719	1	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652056	36652056	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	113	883	2	ENST00000244741.5:c.178G>T	p.Glu60Ter	p.E60*	ENST00000244741	NM_000389.4	60	Gag/Tag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135392	30135392	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	96	462	0	ENST00000331968.5:c.426T>G	p.Phe142Leu	p.F142L	ENST00000331968	NM_002742.2	142	ttT/ttG																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348318	89348318	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	225	1062	0	ENST00000301030.4:c.4632C>A	p.Asp1544Glu	p.D1544E	ENST00000301030	NM_001256183.1	1544	gaC/gaA																																																																															
PREX2	80243	MSKCC	GRCh37	8	68950406	68950406	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	77	545	0	ENST00000288368.4:c.718A>T	p.Thr240Ser	p.T240S	ENST00000288368	NM_024870.2	240	Act/Tct																																																																															
SDHB	6390	MSKCC	GRCh37	1	17380450	17380493	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGCTCCGCCAAGGGTTGTGGCCGGCAACCGGCGCCTCAAGGA	CAGGCTCCGCCAAGGGTTGTGGCCGGCAACCGGCGCCTCAAGGA	T			P-0021573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	55	722	0	ENST00000375499.3:c.22_65delinsA	p.Ser8ThrfsTer55	p.S8Tfs*55	ENST00000375499	NM_003000.2	8	TCCTTGAGGCGCCGGTTGCCGGCCACAACCCTTGGCGGAGCCTGc/Ac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0021630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	58	626	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0021630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	77	585	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931589		P-0021630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	36	363	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519996		P-0021630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	173	961	0	ENST00000269305.4:c.395A>T	p.Lys132Met	p.K132M	ENST00000269305	NM_001126112.2	132	aAg/aTg																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805584	46805584	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	120	852	0	ENST00000290295.7:c.372del	p.Thr125LeufsTer154	p.T125Lfs*154	ENST00000290295	NM_006361.5	124	ccC/cc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604725	48604726	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0021630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	47	544	0	ENST00000342988.3:c.1549_1550del	p.Ser517HisfsTer9	p.S517Hfs*9	ENST00000342988	NM_005359.5	516	cAG/c																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38960080	38960080	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	72	267	0	ENST00000357387.3:c.1852G>A	p.Asp618Asn	p.D618N	ENST00000357387	NM_152756.3	618	Gat/Aat																																																																															
TET1	80312	MSKCC	GRCh37	10	70405899	70405899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	248	922	1	ENST00000373644.4:c.3413C>T	p.Ser1138Leu	p.S1138L	ENST00000373644	NM_030625.2	1138	tCa/tTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29592353	29592353	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060500316		P-0021679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	92	693	0	ENST00000358273.4:c.4831C>T	p.Arg1611Trp	p.R1611W	ENST00000358273	NM_001042492.2	1611	Cgg/Tgg																																																																															
TET1	80312	MSKCC	GRCh37	10	70405524	70405524	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369726331		P-0021679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	488	834	2	ENST00000373644.4:c.3038C>T	p.Ser1013Phe	p.S1013F	ENST00000373644	NM_030625.2	1013	tCc/tTc																																																																															
TET1	80312	MSKCC	GRCh37	10	70405595	70405595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	447	806	2	ENST00000373644.4:c.3109C>A	p.Gln1037Lys	p.Q1037K	ENST00000373644	NM_030625.2	1037	Cag/Aag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230526	46230526	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C	rs750746147		P-0021679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	102	573	0	ENST00000334344.6:c.775G>C	p.Gly259Arg	p.G259R	ENST00000334344	NM_152641.2	259	Ggt/Cgt																																																																															
RAB35	11021	MSKCC	GRCh37	12	120536706	120536706	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	170	927	0	ENST00000229340.5:c.386T>C	p.Val129Ala	p.V129A	ENST00000229340	NM_006861.6	129	gTg/gCg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457635	67457635	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1429991069		P-0021679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	349	952	5	ENST00000327367.4:c.445G>A	p.Glu149Lys	p.E149K	ENST00000327367	NM_005902.3	149	Gag/Aag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88671946	88671946	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	84	595	0	ENST00000360948.2:c.1224C>G	p.Ile408Met	p.I408M	ENST00000360948	NM_001012338.2	408	atC/atG																																																																															
NF1	4763	MSKCC	GRCh37	17	29679370	29679370	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1060500265		P-0021679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	118	647	0	ENST00000358273.4:c.7553C>A	p.Ala2518Asp	p.A2518D	ENST00000358273	NM_001042492.2	2518	gCc/gAc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15383727	15383727	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	159	889	1	ENST00000263377.2:c.184C>T	p.Gln62Ter	p.Q62*	ENST00000263377	NM_058243.2	62	Caa/Taa																																																																															
KDR	3791	MSKCC	GRCh37	4	55946133	55946133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	103	570	0	ENST00000263923.4:c.4046C>A	p.Thr1349Asn	p.T1349N	ENST00000263923	NM_002253.2	1349	aCc/aAc																																																																															
TEK	7010	MSKCC	GRCh37	9	27205002	27205002	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	112	903	0	ENST00000380036.4:c.2303T>A	p.Ile768Asn	p.I768N	ENST00000380036	NM_000459.3	768	aTc/aAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	183	848	0	ENST00000346208.3:c.1003dup	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
SMO	6608	MSKCC	GRCh37	7	128845518	128845518	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748004767		P-0021700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	54	866	1	ENST00000249373.3:c.815C>T	p.Ala272Val	p.A272V	ENST00000249373	NM_005631.4	272	gCg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106400	27106405	+	inframe_deletion	In_Frame_Del	DEL	ACCCAG	ACCCAG	-			P-0021700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	128	612	0	ENST00000324856.7:c.6011_6016del	p.His2004_Gly2006delinsArg	p.H2004_G2006delinsR	ENST00000324856	NM_006015.4	2004	cACCCAGgg/cgg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934873	9934873	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	72	858	0	ENST00000330684.3:c.1417T>C	p.Phe473Leu	p.F473L	ENST00000330684	NM_001134407.1	473	Ttt/Ctt																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170002257	170002257	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs554687623		P-0021700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	58	232	0	ENST00000295797.4:c.1076C>G	p.Ser359Cys	p.S359C	ENST00000295797	NM_002740.5	359	tCt/tGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528630	8528630	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	46	542	0	ENST00000356435.5:c.502A>C	p.Thr168Pro	p.T168P	ENST00000356435		168	Aca/Cca																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061123	38061213	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGGCGGCGCAAGT	CCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGGCGGCGCAAGT	GCGGCGGGGGCGGGAGCGGA			P-0021702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	77	555	4	ENST00000250448.2:c.776_866delinsTCCGCTCCCGCCCCCGCCGC	p.Tyr259PhefsTer10	p.Y259Ffs*10	ENST00000250448	NM_004496.3	259	tACTTGCGCCGCCAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGc/tTCCGCTCCCGCCCCCGCCGCc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658628	3658628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	206	1074	0	ENST00000294008.3:c.338C>T	p.Ser113Phe	p.S113F	ENST00000294008	NM_032444.2	113	tCt/tTt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781409	3781409	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	107	709	0	ENST00000262367.5:c.4956del	p.Asp1653ThrfsTer91	p.D1653Tfs*91	ENST00000262367	NM_004380.2	1652	ccC/cc																																																																															
CDH1	999	MSKCC	GRCh37	16	68853057	68853193	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTATTGTTGGTTTTCAAAATAAAAACGTTGGAAGTAACCATATAACTGAAGAAGCGCTTAAGCCGTTTTCAGCTACATGTTGTTTGCTGGTCCTATTCTAAAAGCCAGAGCTTGTCCCCGTTCAGATATCGGATTT	CCTATTGTTGGTTTTCAAAATAAAAACGTTGGAAGTAACCATATAACTGAAGAAGCGCTTAAGCCGTTTTCAGCTACATGTTGTTTGCTGGTCCTATTCTAAAAGCCAGAGCTTGTCCCCGTTCAGATATCGGATTT	-			P-0021702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	17	69	0	ENST00000261769.5:c.1566-126_1576del		p.X522_splice	ENST00000261769	NM_004360.3	522																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31023479	31023480	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0021702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	79	555	0	ENST00000375687.4:c.2966_2967del	p.Ser989Ter	p.S989*	ENST00000375687	NM_015338.5	988	gaCTct/gact																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55152014	55152015	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0021702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	78	590	0	ENST00000257290.5:c.2447_2448del	p.His816ProfsTer2	p.H816Pfs*2	ENST00000257290	NM_006206.4	816	CAc/c																																																																															
NF1	4763	MSKCC	GRCh37	17	29541468	29541468	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0021709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	66	150	0	ENST00000358273.4:c.1393-1G>A		p.X465_splice	ENST00000358273	NM_001042492.2	465																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66280028	66280028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	58	406	0	ENST00000273854.3:c.1661G>A	p.Arg554Lys	p.R554K	ENST00000273854	NM_004439.5	554	aGa/aAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481403	+	missense_variant	Missense_Mutation	DNP	CC	CC	GA	rs1057519720		P-0021709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	318	638	1	ENST00000288602.6:c.1405_1406delinsTC	p.Gly469Ser	p.G469S	ENST00000288602	NM_004333.4	469	GGa/TCa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141552	11141552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	258	819	1	ENST00000344626.4:c.3529G>A	p.Asp1177Asn	p.D1177N	ENST00000344626	NM_003072.3	1177	Gac/Aac																																																																															
ERF	2077	MSKCC	GRCh37	19	42753428	42753428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	230	912	1	ENST00000222329.4:c.836C>T	p.Pro279Leu	p.P279L	ENST00000222329	NM_006494.2	279	cCc/cTc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508582	106508582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	72	514	0	ENST00000359195.3:c.576C>A	p.Asp192Glu	p.D192E	ENST00000359195	NM_002649.2	192	gaC/gaA																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87339241	87339241	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1403591514		P-0021709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	264	747	1	ENST00000277120.3:c.823G>A	p.Asp275Asn	p.D275N	ENST00000277120		275	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0021711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	33	764	4	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0021711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	17	481	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115872	8115894	+	frameshift_variant	Frame_Shift_Del	DEL	CTCGCCCTTCAGCCACTCCAGCC	CTCGCCCTTCAGCCACTCCAGCC	-			P-0021712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	93	623	2	ENST00000346208.3:c.1218_1240del	p.Ser407HisfsTer92	p.S407Hfs*92	ENST00000346208		406	atCTCGCCCTTCAGCCACTCCAGCCac/atac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	141	737	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0021721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	156	841	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971026	21971054	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCAGGCATCGCGCACGTCCAGCCGCGC	CCCCAGGCATCGCGCACGTCCAGCCGCGC	-			P-0021721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	111	581	0	ENST00000304494.5:c.304_332del	p.Ala102ProfsTer8	p.A102Pfs*8	ENST00000304494	NM_000077.4	102	GCGCGGCTGGACGTGCGCGATGCCTGGGGc/c																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87563428	87563428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	130	823	1	ENST00000277120.3:c.1816G>A	p.Glu606Lys	p.E606K	ENST00000277120		606	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427974	49427974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	232	687	0	ENST00000301067.7:c.10616G>A	p.Arg3539Gln	p.R3539Q	ENST00000301067	NM_003482.3	3539	cGg/cAg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509444	106509444	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	227	732	0	ENST00000359195.3:c.1438T>C	p.Tyr480His	p.Y480H	ENST00000359195	NM_002649.2	480	Tac/Cac																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	48	852	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0021751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	42	774	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517201		P-0021751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	45	779	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016634	12016634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	36	665	0	ENST00000353533.5:c.770C>T	p.Ser257Phe	p.S257F	ENST00000353533	NM_003010.3	257	tCt/tTt																																																																															
CDH1	999	MSKCC	GRCh37	16	68849456	68849456	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	72	898	0	ENST00000261769.5:c.1359del	p.His453GlnfsTer2	p.H453Qfs*2	ENST00000261769	NM_004360.3	453	caC/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7579315	7579315	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	585	552	1	ENST00000269305.4:c.372C>A	p.Cys124Ter	p.C124*	ENST00000269305	NM_001126112.2	124	tgC/tgA																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99478604	99478604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1092	174	595	0	ENST00000268035.6:c.3246G>A	p.Met1082Ile	p.M1082I	ENST00000268035	NM_000875.3	1082	atG/atA																																																																															
INSR	3643	MSKCC	GRCh37	19	7142853	7142853	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	154	605	0	ENST00000302850.5:c.2516A>T	p.Tyr839Phe	p.Y839F	ENST00000302850	NM_000208.2	839	tAc/tTc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430752	181430752	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754986575		P-0021826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	188	827	0	ENST00000325404.1:c.604G>A	p.Val202Met	p.V202M	ENST00000325404	NM_003106.3	202	Gtg/Atg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141567259	141567259	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1496	178	821	2	ENST00000220592.5:c.955G>T	p.Val319Phe	p.V319F	ENST00000220592	NM_012154.3	319	Gtt/Ttt																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551931	150551931	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	76	570	0	ENST00000369026.2:c.76G>C	p.Gly26Arg	p.G26R	ENST00000369026	NM_021960.4	26	Ggc/Cgc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374664	118374664	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	452	524	0	ENST00000534358.1:c.8057A>T	p.Asn2686Ile	p.N2686I	ENST00000534358	NM_005933.3	2686	aAc/aTc																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811777	102811777	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	328	638	0	ENST00000307046.8:c.407A>C	p.Gln136Pro	p.Q136P	ENST00000307046	NM_001111285.1	136	cAg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	421	783	1	ENST00000269305.4:c.314del	p.Gly105AlafsTer18	p.G105Afs*18	ENST00000269305	NM_001126112.2	105	gGc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579380	7579380	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	435	793	0	ENST00000269305.4:c.307T>C	p.Tyr103His	p.Y103H	ENST00000269305	NM_001126112.2	103	Tac/Cac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602818	10602818	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	268	804	0	ENST00000171111.5:c.760A>T	p.Lys254Ter	p.K254*	ENST00000171111	NM_203500.1	254	Aag/Tag																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027854	48027854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761622304		P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	133	488	0	ENST00000234420.5:c.2732G>A	p.Arg911Gln	p.R911Q	ENST00000234420	NM_000179.2	911	cGa/cAa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485448	57485448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	71	453	0	ENST00000371085.3:c.1030G>A	p.Glu344Lys	p.E344K	ENST00000371085	NM_000516.4	344	Gag/Aag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361263	66361263	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	42	327	1	ENST00000273854.3:c.911-2A>T		p.X304_splice	ENST00000273854	NM_004439.5	304																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56181842	56181842	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	111	565	0	ENST00000399503.3:c.4066G>T	p.Gly1356Cys	p.G1356C	ENST00000399503	NM_005921.1	1356	Ggc/Tgc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165260	32165260	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	117	774	0	ENST00000375023.3:c.4868G>T	p.Gly1623Val	p.G1623V	ENST00000375023	NM_004557.3	1623	gGg/gTg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117737452	117737452	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	88	659	0	ENST00000368508.3:c.197C>G	p.Ser66Cys	p.S66C	ENST00000368508	NM_002944.2	66	tCt/tGt																																																																															
HGF	3082	MSKCC	GRCh37	7	81372753	81372753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	285	525	0	ENST00000222390.5:c.781C>T	p.Arg261Cys	p.R261C	ENST00000222390	NM_000601.4	261	Cgc/Tgc																																																																															
LYN	4067	MSKCC	GRCh37	8	56864658	56864658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	57	643	1	ENST00000519728.1:c.621G>A	p.Met207Ile	p.M207I	ENST00000519728	NM_002350.3	207	atG/atA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410865	63410865	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	216	733	0	ENST00000330258.3:c.2302A>G	p.Ser768Gly	p.S768G	ENST00000330258	NM_152424.3	768	Agt/Ggt																																																																															
MED12	9968	MSKCC	GRCh37	X	70345959	70345959	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	112	759	2	ENST00000374080.3:c.2496G>T	p.Lys832Asn	p.K832N	ENST00000374080		832	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	870	732	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0021862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2002	4076	508	1	ENST00000275493.2:c.2303_2311dup	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937103	36937103	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1364558879		P-0021862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	398	559	2	ENST00000361632.4:c.1216G>A	p.Val406Met	p.V406M	ENST00000361632		406	Gtg/Atg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3831204	3831204	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0021862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	246	422	0	ENST00000262367.5:c.1676+1G>A		p.X559_splice	ENST00000262367	NM_004380.2	559																																																																																
INSR	3643	MSKCC	GRCh37	19	7141701	7141701	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	357	636	0	ENST00000302850.5:c.2669G>T	p.Arg890Leu	p.R890L	ENST00000302850	NM_000208.2	890	cGa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	378	960	2	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518183	8518183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	1208	589	0	ENST00000356435.5:c.1208C>T	p.Pro403Leu	p.P403L	ENST00000356435		403	cCt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs786201057		P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	36	627	1	ENST00000269305.4:c.374C>A	p.Thr125Lys	p.T125K	ENST00000269305	NM_001126112.2	125	aCg/aAg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600324	10600324	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	308	699	0	ENST00000171111.5:c.1531G>T	p.Gly511Cys	p.G511C	ENST00000171111	NM_203500.1	511	Ggc/Tgc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66242768	66242768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	307	488	0	ENST00000273854.3:c.1804G>T	p.Gly602Cys	p.G602C	ENST00000273854	NM_004439.5	602	Ggc/Tgc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52677289	52677289	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	452	922	0	ENST00000394830.3:c.970A>T	p.Arg324Ter	p.R324*	ENST00000394830	NM_018313.4	324	Aga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467557	66467557	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1373753989		P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	334	510	4	ENST00000273854.3:c.712C>T	p.Arg238Ter	p.R238*	ENST00000273854	NM_004439.5	238	Cga/Tga																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073385	8073618	+	inframe_deletion	In_Frame_Del	DEL	GGCTGGATTTGGGCGCCTCCATTTGTTTCTTCTGCTTCCCTAAAAAATTTTTCATATTTGTCCAGGTATGGTGGTCGTTCAGGTAGTAGGTAATAATGTGTTGAACTAACCTTCTTCCCATTTTCAATAATGGGCAGAATGCAAGGAACCTTACTGGCAGATCCTTCGCTGTTCTGTCTTTGCAGTGCTTTGCTGCTGACATACTTGGGATCAGGGGCAAAGCTCTGTGTCGGG	GGCTGGATTTGGGCGCCTCCATTTGTTTCTTCTGCTTCCCTAAAAAATTTTTCATATTTGTCCAGGTATGGTGGTCGTTCAGGTAGTAGGTAATAATGTGTTGAACTAACCTTCTTCCCATTTTCAATAATGGGCAGAATGCAAGGAACCTTACTGGCAGATCCTTCGCTGTTCTGTCTTTGCAGTGCTTTGCTGCTGACATACTTGGGATCAGGGGCAAAGCTCTGTGTCGGG	-			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	358	760	0	ENST00000377482.5:c.1041_1274del	p.Pro348_Pro425del	p.P348_P425del	ENST00000377482	NM_018948.3	347	ccCCCGACACAGAGCTTTGCCCCTGATCCCAAGTATGTCAGCAGCAAAGCACTGCAAAGACAGAACAGCGAAGGATCTGCCAGTAAGGTTCCTTGCATTCTGCCCATTATTGAAAATGGGAAGAAGGTTAGTTCAACACATTATTACCTACTACCTGAACGACCACCATACCTGGACAAATATGAAAAATTTTTTAGGGAAGCAGAAGAAACAAATGGAGGCGCCCAAATCCAGCCa/cca																																																																															
ID3	3399	MSKCC	GRCh37	1	23885917	23885917	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	167	417	0	ENST00000374561.5:c.1A>T	p.Met1?	p.M1?	ENST00000374561	NM_002167.4	1	Atg/Ttg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46715696	46715696	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	448	842	1	ENST00000371975.4:c.115A>T	p.Ser39Cys	p.S39C	ENST00000371975	NM_003579.3	39	Agt/Tgt																																																																															
EED	8726	MSKCC	GRCh37	11	85989033	85989033	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	115	548	0	ENST00000263360.6:c.1199A>G	p.Lys400Arg	p.K400R	ENST00000263360	NM_003797.3	400	aAa/aGa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641544	18641544	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	334	637	0	ENST00000266497.5:c.2543C>G	p.Ala848Gly	p.A848G	ENST00000266497		848	gCc/gGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440438	49440438	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	430	917	0	ENST00000301067.7:c.4372G>C	p.Asp1458His	p.D1458H	ENST00000301067	NM_003482.3	1458	Gac/Cac																																																																															
FLT3	2322	MSKCC	GRCh37	13	28626755	28626755	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs750445891		P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	392	746	0	ENST00000241453.7:c.541G>T	p.Ala181Ser	p.A181S	ENST00000241453	NM_004119.2	181	Gcc/Tcc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28631559	28631559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	178	716	1	ENST00000241453.7:c.409C>A	p.Gln137Lys	p.Q137K	ENST00000241453	NM_004119.2	137	Caa/Aaa																																																																															
MGA	23269	MSKCC	GRCh37	15	42042557	42042557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	88	583	1	ENST00000219905.7:c.6752C>T	p.Ser2251Leu	p.S2251L	ENST00000219905	NM_001164273.1	2251	tCa/tTa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944136	81944136	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	230	681	1	ENST00000359376.3:c.1745G>T	p.Arg582Leu	p.R582L	ENST00000359376	NM_002661.3	582	cGg/cTg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618814	37618814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	252	662	2	ENST00000447079.4:c.490G>T	p.Ala164Ser	p.A164S	ENST00000447079	NM_015083.1	164	Gcg/Tcg																																																																															
CALR	811	MSKCC	GRCh37	19	13051624	13051644	+	inframe_deletion	In_Frame_Del	DEL	GACAACCCCGAGTATTCTCCC	GACAACCCCGAGTATTCTCCC	-			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	348	811	1	ENST00000316448.5:c.885_905del	p.Asn296_Asp302del	p.N296_D302del	ENST00000316448	NM_004343.3	295	GACAACCCCGAGTATTCTCCC/-																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376347	15376347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	203	1112	1	ENST00000263377.2:c.667C>T	p.His223Tyr	p.H223Y	ENST00000263377	NM_058243.2	223	Cac/Tac																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25976464	25976464	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	200	847	0	ENST00000435504.4:c.1081G>C	p.Glu361Gln	p.E361Q	ENST00000435504		361	Gag/Cag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660775	227660775	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	503	735	1	ENST00000305123.5:c.2680G>T	p.Gly894Trp	p.G894W	ENST00000305123	NM_005544.2	894	Ggg/Tgg																																																																															
ERG	2078	MSKCC	GRCh37	21	39755437	39755437	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	336	716	0	ENST00000288319.7:c.1328C>A	p.Ser443Tyr	p.S443Y	ENST00000288319	NM_182918.3	443	tCc/tAc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430722	181430722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	814	689	1	ENST00000325404.1:c.574G>A	p.Ala192Thr	p.A192T	ENST00000325404	NM_003106.3	192	Gcg/Acg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139775	55139775	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	86	744	0	ENST00000257290.5:c.1436G>C	p.Arg479Pro	p.R479P	ENST00000257290	NM_006206.4	479	cGa/cCa																																																																															
KDR	3791	MSKCC	GRCh37	4	55984783	55984783	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	376	658	0	ENST00000263923.4:c.346G>T	p.Val116Phe	p.V116F	ENST00000263923	NM_002253.2	116	Gtc/Ttc																																																																															
TET2	54790	MSKCC	GRCh37	4	106156326	106156328	+	frameshift_variant	Frame_Shift_Del	DEL	TCC	TCC	CT			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	229	541	2	ENST00000380013.4:c.1227_1229delinsCT	p.Pro410PhefsTer17	p.P410Ffs*17	ENST00000380013	NM_001127208.2	409	ccTCCt/ccCTt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143033782	143033782	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	331	761	0	ENST00000262992.4:c.2189C>G	p.Pro730Arg	p.P730R	ENST00000262992	NM_001101669.1	730	cCt/cGt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564741	86564741	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs200949838		P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	95	765	0	ENST00000274376.6:c.473C>G	p.Ser158Cys	p.S158C	ENST00000274376	NM_002890.2	158	tCt/tGt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681601	30681601	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	441	756	1	ENST00000376406.3:c.496G>C	p.Glu166Gln	p.E166Q	ENST00000376406	NM_014641.2	166	Gag/Cag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873676	151873676	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	390	688	0	ENST00000262189.6:c.8862G>T	p.Leu2954Phe	p.L2954F	ENST00000262189	NM_170606.2	2954	ttG/ttT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0022015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	60	835	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
WT1	7490	MSKCC	GRCh37	11	32413568	32413568	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	51	680	1	ENST00000332351.3:c.1382C>A	p.Ser461Tyr	p.S461Y	ENST00000332351	NM_024426.4	461	tCc/tAc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740529	58740529	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs146477590		P-0022015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	109	707	0	ENST00000305921.3:c.1434C>A	p.Cys478Ter	p.C478*	ENST00000305921	NM_003620.3	478	tgC/tgA																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11136166	11136166	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	80	894	0	ENST00000344626.4:c.3150C>A	p.Tyr1050Ter	p.Y1050*	ENST00000344626	NM_003072.3	1050	taC/taA																																																																															
HGF	3082	MSKCC	GRCh37	7	81334791	81334791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	30	674	0	ENST00000222390.5:c.1925G>A	p.Cys642Tyr	p.C642Y	ENST00000222390	NM_000601.4	642	tGc/tAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508239	106508239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	30	425	0	ENST00000359195.3:c.233C>A	p.Ala78Glu	p.A78E	ENST00000359195	NM_002649.2	78	gCg/gAg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738271	145738271	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	57	1121	0	ENST00000428558.2:c.2714C>G	p.Pro905Arg	p.P905R	ENST00000428558	NM_004260.3	905	cCa/cGa																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797515	45797515	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs765808018		P-0022049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1268	138	755	0	ENST00000372115.3:c.962A>G	p.Asn321Ser	p.N321S	ENST00000372115	NM_001048171.1	321	aAc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577101	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0022049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	354	706	0	ENST00000269305.4:c.837_839del	p.Arg280del	p.R280del	ENST00000269305	NM_001126112.2	279	ggGAGa/gga																																																																															
MPL	4352	MSKCC	GRCh37	1	43818216	43818218	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0022062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	256	660	0	ENST00000372470.3:c.1685_1687del	p.Glu562del	p.E562del	ENST00000372470	NM_005373.2	561	GAA/-																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736248	243736248	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	143	522	0	ENST00000263826.5:c.799A>T	p.Ile267Phe	p.I267F	ENST00000263826	NM_005465.4	267	Att/Ttt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944755	71944755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	288	878	1	ENST00000298229.2:c.2179G>T	p.Val727Phe	p.V727F	ENST00000298229	NM_001567.3	727	Gtt/Ttt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	345	866	2	ENST00000267101.3:c.310G>C	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ctg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436450	110436450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			6648	472	904	9	ENST00000375856.3:c.1951G>A	p.Asp651Asn	p.D651N	ENST00000375856	NM_003749.2	651	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579359	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGAAA			P-0022062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	336	785	0	ENST00000269305.4:c.324_328dup	p.Arg110LeufsTer15	p.R110Lfs*15	ENST00000269305	NM_001126112.2	110	cgt/cTTTCCgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220632	1220632	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782146		P-0022062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	23	761	2	ENST00000326873.7:c.650C>T	p.Pro217Leu	p.P217L	ENST00000326873	NM_000455.4	217	cCg/cTg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199825	138199825	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	235	574	1	ENST00000237289.4:c.1243C>A	p.Gln415Lys	p.Q415K	ENST00000237289	NM_001270507.1	415	Caa/Aaa																																																																															
HGF	3082	MSKCC	GRCh37	7	81336651	81336664	+	frameshift_variant	Frame_Shift_Del	DEL	ATCAATGATCCTCC	ATCAATGATCCTCC	-			P-0022062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	39	523	0	ENST00000222390.5:c.1558_1571del	p.Gly520LysfsTer21	p.G520Kfs*21	ENST00000222390	NM_000601.4	520	GGAGGATCATTGATa/a																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390843	139390844	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GCTGGGGCCCAGTGGCTGCACGTCTGCCTGGCTCGGCTCTCCACTCAGGAAGCTCCGGCCCA			P-0022062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	81	807	0	ENST00000277541.6:c.7286_7347dup	p.Ser2450TrpfsTer6	p.S2450Wfs*6	ENST00000277541	NM_017617.3	2449	-/TGGGCCGGAGCTTCCTGAGTGGAGAGCCGAGCCAGGCAGACGTGCAGCCACTGGGCCCCAGC																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139397700	139397700	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	303	753	0	ENST00000277541.6:c.5101G>C	p.Ala1701Pro	p.A1701P	ENST00000277541	NM_017617.3	1701	Gca/Cca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238941	5238941	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs913402227		P-0022084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	72	493	0	ENST00000357368.4:c.1838C>T	p.Thr613Met	p.T613M	ENST00000357368	NM_002850.3	613	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs757274881		P-0022084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	391	999	2	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737142	145737142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61755067		P-0022084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	229	894	1	ENST00000428558.2:c.3424G>A	p.Asp1142Asn	p.D1142N	ENST00000428558	NM_004260.3	1142	Gac/Aac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	427	824	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941184	71941184	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	170	867	0	ENST00000298229.2:c.959T>C	p.Leu320Pro	p.L320P	ENST00000298229	NM_001567.3	320	cTg/cCg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817751	3817751	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	171	699	0	ENST00000262367.5:c.3220T>C	p.Ser1074Pro	p.S1074P	ENST00000262367	NM_004380.2	1074	Tca/Cca																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45864832	45864832	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778436682		P-0022084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	253	1115	1	ENST00000391945.4:c.1187C>T	p.Pro396Leu	p.P396L	ENST00000391945	NM_000400.3	396	cCg/cTg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62311242	62311242	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	G			P-0022084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	154	523	0	ENST00000482936.1:c.1078C>G	p.Gln360Glu	p.Q360E	ENST00000482936		360	Cag/Gag																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755533	57755533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	326	688	0	ENST00000274289.3:c.254G>A	p.Gly85Asp	p.G85D	ENST00000274289	NM_006622.3	85	gGc/gAc																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5534978	5534978	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201840318		P-0022084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	163	536	1	ENST00000397747.3:c.289G>A	p.Glu97Lys	p.E97K	ENST00000397747	NM_025239.3	97	Gaa/Aaa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139397675	139397675	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs886043624		P-0022084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	142	855	0	ENST00000277541.6:c.5126T>C	p.Leu1709Pro	p.L1709P	ENST00000277541	NM_017617.3	1709	cTg/cCg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89712017	89712017	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0022091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	117	265	0	ENST00000371953.3:c.634+1G>T		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																																
CARM1	10498	MSKCC	GRCh37	19	11032379	11032379	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1427308204		P-0022091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	148	774	0	ENST00000327064.4:c.1773C>G	p.Ile591Met	p.I591M	ENST00000327064	NM_199141.1	591	atC/atG																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484336	8484336	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	91	527	0	ENST00000356435.5:c.3196C>T	p.Arg1066Ter	p.R1066*	ENST00000356435		1066	Cga/Tga																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399998	139400009	+	inframe_deletion	In_Frame_Del	DEL	CTCGCACGCCTC	CTCGCACGCCTC	-			P-0022091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	432	847	2	ENST00000277541.6:c.4339_4350del	p.Glu1447_Glu1450del	p.E1447_E1450del	ENST00000277541	NM_017617.3	1447	GAGGCGTGCGAG/-																																																																															
RAC1	5879	MSKCC	GRCh37	7	6442013	6442013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	52	261	0	ENST00000356142.4:c.572C>T	p.Ala191Val	p.A191V	ENST00000356142	NM_018890.3	191	gCg/gTg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852568	63852568	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	101	429	0	ENST00000279873.7:c.3346A>T	p.Met1116Leu	p.M1116L	ENST00000279873	NM_032199.2	1116	Atg/Ttg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696450	47696450	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	228	715	0	ENST00000347630.2:c.373T>G	p.Phe125Val	p.F125V	ENST00000347630	NM_001007230.1	125	Ttt/Gtt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061247	38061247	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	692	952	2	ENST00000250448.2:c.742C>A	p.Pro248Thr	p.P248T	ENST00000250448	NM_004496.3	248	Ccg/Acg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832200	72832200	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	197	645	0	ENST00000268489.5:c.4381del	p.Gln1461AsnfsTer27	p.Q1461Nfs*27	ENST00000268489	NM_006885.3	1461	Caa/aa																																																																															
EP300	2033	MSKCC	GRCh37	22	41545952	41545954	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-	rs770125372		P-0015102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	321	1085	0	ENST00000263253.7:c.2573_2575del	p.Thr858del	p.T858del	ENST00000263253	NM_001429.3	856	gCAAca/gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578412	7578412	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519747		P-0015204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	161	684	0	ENST00000269305.4:c.518T>G	p.Val173Gly	p.V173G	ENST00000269305	NM_001126112.2	173	gTg/gGg																																																																															
CCND2	894	MSKCC	GRCh37	12	4383268	4383268	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	32	475	0	ENST00000261254.3:c.62T>A	p.Leu21His	p.L21H	ENST00000261254	NM_001759.3	21	cTc/cAc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500294	99500294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	129	587	0	ENST00000268035.6:c.3727G>A	p.Glu1243Lys	p.E1243K	ENST00000268035	NM_000875.3	1243	Gaa/Aaa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39237798	39237798	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	62	468	0	ENST00000402219.2:c.2437G>C	p.Asp813His	p.D813H	ENST00000402219	NM_005633.3	813	Gac/Cac																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754904	57754905	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	50	305	0	ENST00000274289.3:c.285dup	p.Cys96MetfsTer10	p.C96Mfs*10	ENST00000274289	NM_006622.3	95	-/A																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845479	151845479	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	157	618	0	ENST00000262189.6:c.13533T>G	p.Ile4511Met	p.I4511M	ENST00000262189	NM_170606.2	4511	atT/atG																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	150	455	1	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871830	35871835	+	inframe_deletion	In_Frame_Del	DEL	CCACTG	CCACTG	-			P-0015239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	132	769	0	ENST00000216797.5:c.671_676del	p.Ala224_Val225del	p.A224_V225del	ENST00000216797	NM_020529.2	224	gCAGTGGac/gac																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213242	39213243	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	135	1199	3	ENST00000402219.2:c.3724dup	p.Ser1242LysfsTer2	p.S1242Kfs*2	ENST00000402219	NM_005633.3	1242	agt/aAgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0015321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	160	559	2	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
IL10	3586	MSKCC	GRCh37	1	206941983	206941983	+	stop_lost	Nonstop_Mutation	SNP	A	A	T			P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	20	179	0	ENST00000423557.1:c.535T>A	p.Ter179ArgextTer8	p.*179Rext*8	ENST00000423557	NM_000572.2	179	Tga/Aga																																																																															
HRAS	3265	MSKCC	GRCh37	11	533857	533857	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs771774973		P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	35	393	0	ENST00000311189.7:c.199A>G	p.Met67Val	p.M67V	ENST00000311189		67	Atg/Gtg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999210	100999210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	37	285	0	ENST00000325455.5:c.592C>A	p.Pro198Thr	p.P198T	ENST00000325455	NM_001202474.3	198	Ccg/Acg																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50481183	50481183	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs767607029		P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	31	295	0	ENST00000394963.4:c.569T>C	p.Phe190Ser	p.F190S	ENST00000394963	NM_003076.4	190	tTc/tCc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570152	95570152	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	29	237	1	ENST00000343455.3:c.3581G>T	p.Arg1194Ile	p.R1194I	ENST00000343455	NM_177438.2	1194	aGa/aTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1221282	1221282	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	35	401	0	ENST00000326873.7:c.805A>T	p.Lys269Ter	p.K269*	ENST00000326873	NM_000455.4	269	Aag/Tag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221496	36221496	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	113	413	0	ENST00000222270.7:c.5255G>T	p.Arg1752Leu	p.R1752L	ENST00000222270	NM_014727.1	1752	cGg/cTg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31389227	31389227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	30	281	0	ENST00000328111.2:c.2140C>A	p.Leu714Met	p.L714M	ENST00000328111	NM_006892.3	714	Ctg/Atg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730031	41730031	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1374218408		P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	36	279	0	ENST00000242208.4:c.498G>T	p.Arg166Ser	p.R166S	ENST00000242208	NM_002192.2	166	agG/agT																																																																															
BRAF	673	MSKCC	GRCh37	7	140454007	140454007	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	24	207	0	ENST00000288602.6:c.1721A>T	p.His574Leu	p.H574L	ENST00000288602	NM_004333.4	574	cAc/cTc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69005919	69005919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	68	363	1	ENST00000288368.4:c.2330G>A	p.Gly777Glu	p.G777E	ENST00000288368	NM_024870.2	777	gGa/gAa																																																																															
ABL1	25	MSKCC	GRCh37	9	133760054	133760054	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	33	391	0	ENST00000318560.5:c.2377G>T	p.Ala793Ser	p.A793S	ENST00000318560	NM_005157.4	793	Gct/Tct																																																																															
MED12	9968	MSKCC	GRCh37	X	70362030	70362030	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	42	480	0	ENST00000374080.3:c.6496C>A	p.Gln2166Lys	p.Q2166K	ENST00000374080		2166	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0015360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	34	490	1	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0015360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	17	332	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436097	56436097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	62	389	0	ENST00000407977.2:c.1040G>A	p.Gly347Asp	p.G347D	ENST00000407977		347	gGc/gAc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615692	1615692	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	36	528	0	ENST00000344749.5:c.1579del	p.Arg527GlyfsTer16	p.R527Gfs*16	ENST00000344749	NM_001136139.2	527	Cgg/gg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936098	71936098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	10	58	0	ENST00000298229.2:c.70C>T	p.Arg24Cys	p.R24C	ENST00000298229	NM_001567.3	24	Cgc/Tgc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120872	115120872	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	18	206	0	ENST00000257566.3:c.134C>A	p.Thr45Lys	p.T45K	ENST00000257566	NM_016569.3	45	aCg/aAg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610256	10610256	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	55	556	0	ENST00000171111.5:c.454G>T	p.Val152Phe	p.V152F	ENST00000171111	NM_203500.1	152	Gtc/Ttc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390216	89390216	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	28	248	0	ENST00000336596.2:c.965G>C	p.Cys322Ser	p.C322S	ENST00000336596	NM_005233.5	322	tGt/tCt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129287	152129287	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	34	397	1	ENST00000206249.3:c.240C>A	p.Tyr80Ter	p.Y80*	ENST00000206249	NM_000125.3	80	taC/taA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057520000		P-0015376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	94	469	2	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587777894		P-0015376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	67	401	0	ENST00000361445.4:c.6644C>A	p.Ser2215Tyr	p.S2215Y	ENST00000361445	NM_004958.3	2215	tCt/tAt																																																																															
STK19	8859	MSKCC	GRCh37	6	31947215	31947215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	119	368	0	ENST00000375331.2:c.688C>T	p.Pro230Ser	p.P230S	ENST00000375331	NM_004197.1	230	Ccg/Tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0015412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	667	749	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255020	16255020	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747601086		P-0015412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	307	414	0	ENST00000375759.3:c.2285G>A	p.Arg762Gln	p.R762Q	ENST00000375759	NM_015001.2	762	cGg/cAg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177700	56177700	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	252	391	0	ENST00000399503.3:c.2673C>A	p.Asn891Lys	p.N891K	ENST00000399503	NM_005921.1	891	aaC/aaA																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969923	161969923	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	222	539	2	ENST00000366898.1:c.1046A>T	p.Lys349Ile	p.K349I	ENST00000366898	NM_004562.2	349	aAa/aTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097611	27097612	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0015432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	237	410	0	ENST00000324856.7:c.3200_3201insG	p.Asn1068GlnfsTer37	p.N1068Qfs*37	ENST00000324856	NM_006015.4	1067	gtc/gtGc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912646	32912646	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0015432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	138	373	0	ENST00000380152.3:c.4154C>G	p.Ser1385Ter	p.S1385*	ENST00000380152		1385	tCa/tGa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420338	88420338	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	227	409	0	ENST00000360948.2:c.2348T>A	p.Ile783Asn	p.I783N	ENST00000360948	NM_001012338.2	783	aTt/aAt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71090535	71090572	+	frameshift_variant	Frame_Shift_Del	DEL	CATTATTAAGGAGGTCTTGGAAGGTGCAGAGGAGGAGA	CATTATTAAGGAGGTCTTGGAAGGTGCAGAGGAGGAGA	-			P-0015432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	148	283	0	ENST00000318789.4:c.776_813del	p.Val259GlufsTer23	p.V259Efs*23	ENST00000318789	NM_032682.5	259	gTCTCCTCCTCTGCACCTTCCAAGACCTCCTTAATAATG/g																																																																															
LYN	4067	MSKCC	GRCh37	8	56854531	56854531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	142	415	1	ENST00000519728.1:c.113C>T	p.Ser38Phe	p.S38F	ENST00000519728	NM_002350.3	38	tCc/tTc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931925	39931925	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	441	635	0	ENST00000378444.4:c.2674del	p.Leu892Ter	p.L892*	ENST00000378444	NM_001123385.1	892	Cta/ta																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10283798	10283798	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201749864		P-0015476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	122	596	1	ENST00000340748.4:c.688C>T	p.Arg230Cys	p.R230C	ENST00000340748		230	Cgc/Tgc																																																																															
AXL	558	MSKCC	GRCh37	19	41758774	41758774	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs758985963		P-0015476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	203	649	1	ENST00000301178.4:c.1828C>T	p.Arg610Ter	p.R610*	ENST00000301178	NM_021913.4	610	Cga/Tga																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46574091	46574091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	100	665	0	ENST00000263734.3:c.106G>C	p.Glu36Gln	p.E36Q	ENST00000263734	NM_001430.4	36	Gag/Cag																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138478013	138478055	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ACCTGCTTAATATAAGAAATGGTAGCTTCCCGAGGTACCTCCA	ACCTGCTTAATATAAGAAATGGTAGCTTCCCGAGGTACCTCCA	-			P-0015476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	120	402	0	ENST00000289153.2:c.131_171+2del		p.X44_splice	ENST00000289153	NM_006219.2	44																																																																																
TCEB1	6921	MSKCC	GRCh37	8	74868188	74868211	+	inframe_deletion	In_Frame_Del	DEL	CATGTTCTCTTTTTACAATAAATT	CATGTTCTCTTTTTACAATAAATT	-			P-0015476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	47	97	0	ENST00000518127.1:c.83_106del	p.Glu28_His35del	p.E28_H35del	ENST00000518127	NM_001204857.1	28	gAATTTATTGTAAAAAGAGAACATGca/gca																																																																															
NBN	4683	MSKCC	GRCh37	8	90976685	90976685	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2034	188	553	2	ENST00000265433.3:c.947del	p.Phe316SerfsTer2	p.F316Sfs*2	ENST00000265433	NM_002485.4	316	tTc/tc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59924478	59924478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	42	220	0	ENST00000259008.2:c.611C>A	p.Ser204Tyr	p.S204Y	ENST00000259008	NM_032043.2	204	tCc/tAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	445	332	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	544	458	1	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	261	560	0	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa																																																																															
BRAF	673	MSKCC	GRCh37	7	140477794	140477794	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	106	323	0	ENST00000288602.6:c.1514T>A	p.Leu505His	p.L505H	ENST00000288602	NM_004333.4	505	cTc/cAc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513462	149513462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	846	427	0	ENST00000261799.4:c.741G>T	p.Trp247Cys	p.W247C	ENST00000261799	NM_002609.3	247	tgG/tgT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100873	27100874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	544	361	0	ENST00000324856.7:c.4159dup	p.Glu1387GlyfsTer58	p.E1387Gfs*58	ENST00000324856	NM_006015.4	1385	-/G																																																																															
TET1	80312	MSKCC	GRCh37	10	70333002	70333002	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	400	559	0	ENST00000373644.4:c.907A>T	p.Asn303Tyr	p.N303Y	ENST00000373644	NM_030625.2	303	Aat/Tat																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125514506	125514506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	149	274	1	ENST00000428830.2:c.1201G>T	p.Gly401Cys	p.G401C	ENST00000428830	NM_001114121.2	401	Ggc/Tgc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114257	115114257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	144	381	0	ENST00000257566.3:c.960G>C	p.Gln320His	p.Q320H	ENST00000257566	NM_016569.3	320	caG/caC																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609474	81609474	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	135	331	0	ENST00000298171.2:c.1072G>C	p.Glu358Gln	p.E358Q	ENST00000298171	NM_000369.2	358	Gaa/Caa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39550347	39550347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	122	361	0	ENST00000262039.4:c.458G>T	p.Gly153Val	p.G153V	ENST00000262039	NM_002647.2	153	gGa/gTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877393	40877393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	448	419	0	ENST00000373198.4:c.2303G>T	p.Gly768Val	p.G768V	ENST00000373198	NM_133170.3	768	gGc/gTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1258745	1258745	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	434	447	0	ENST00000310581.5:c.3000C>A	p.Asn1000Lys	p.N1000K	ENST00000310581	NM_198253.2	1000	aaC/aaA																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177083	56177083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	81	193	1	ENST00000399503.3:c.2353G>A	p.Glu785Lys	p.E785K	ENST00000399503	NM_005921.1	785	Gag/Aag																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538948	23538948	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	212	401	1	ENST00000380871.4:c.491C>A	p.Thr164Lys	p.T164K	ENST00000380871	NM_006167.3	164	aCg/aAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8339040	8339040	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	284	296	0	ENST00000356435.5:c.5261G>C	p.Cys1754Ser	p.C1754S	ENST00000356435		1754	tGt/tCt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484342	8484342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	239	346	1	ENST00000356435.5:c.3190G>T	p.Asp1064Tyr	p.D1064Y	ENST00000356435		1064	Gat/Tat																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229398	98229398	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	81	156	0	ENST00000331920.6:c.2560G>A	p.Gly854Arg	p.G854R	ENST00000331920	NM_000264.3	854	Gga/Aga																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393576	139393576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	266	463	1	ENST00000277541.6:c.6070G>T	p.Val2024Leu	p.V2024L	ENST00000277541	NM_017617.3	2024	Gta/Tta																																																																															
MED12	9968	MSKCC	GRCh37	X	70343457	70343457	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	372	377	0	ENST00000374080.3:c.1631C>A	p.Ser544Ter	p.S544*	ENST00000374080		544	tCa/tAa																																																																															
ATRX	546	MSKCC	GRCh37	X	76940463	76940463	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	97	465	0	ENST00000373344.5:c.630C>A	p.Ser210Arg	p.S210R	ENST00000373344	NM_000489.3	210	agC/agA																																																																															
MED12	9968	MSKCC	GRCh37	X	70339726	70339727	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AG	AG	T			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	370	459	0	ENST00000374080.3:c.395_396delinsT	p.Lys132MetfsTer15	p.K132Mfs*15	ENST00000374080		132	aAG/aT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0015518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	888	383	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578493	7578500	+	frameshift_variant	Frame_Shift_Del	DEL	CACAGCTG	CACAGCTG	-			P-0015518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	647	584	0	ENST00000269305.4:c.430_437del	p.Gln144GlyfsTer2	p.Q144Gfs*2	ENST00000269305	NM_001126112.2	144	CAGCTGTGg/g																																																																															
RET	5979	MSKCC	GRCh37	10	43609011	43609011	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	303	316	0	ENST00000355710.3:c.1767C>A	p.Ser589Arg	p.S589R	ENST00000355710	NM_020975.4	589	agC/agA																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99482514	99482514	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777966016		P-0015518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	197	363	0	ENST00000268035.6:c.3382G>A	p.Ala1128Thr	p.A1128T	ENST00000268035	NM_000875.3	1128	Gcc/Acc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533721	63533721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	285	262	0	ENST00000307078.5:c.1433del	p.His478ProfsTer29	p.H478Pfs*29	ENST00000307078	NM_004655.3	478	cAc/cc																																																																															
ALK	238	MSKCC	GRCh37	2	29436932	29436932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	145	267	0	ENST00000389048.3:c.3661C>A	p.Leu1221Met	p.L1221M	ENST00000389048	NM_004304.4	1221	Ctg/Atg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864658	68864658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1418006656		P-0015518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	100	123	0	ENST00000288368.4:c.29G>A	p.Arg10His	p.R10H	ENST00000288368	NM_024870.2	10	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	344	589	1	ENST00000269305.4:c.461del	p.Gly154AlafsTer16	p.G154Afs*16	ENST00000269305	NM_001126112.2	154	gGc/gc																																																																															
CD276	80381	MSKCC	GRCh37	15	73995320	73995320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	37	109	0	ENST00000318443.5:c.626G>T	p.Arg209Leu	p.R209L	ENST00000318443	NM_001024736.1	209	cGg/cTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212361	5212361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	308	505	2	ENST00000357368.4:c.4756G>T	p.Val1586Leu	p.V1586L	ENST00000357368	NM_002850.3	1586	Gtg/Ttg																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99850077	99850077	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	393	534	0	ENST00000280892.6:c.47T>C	p.Met16Thr	p.M16T	ENST00000280892	NM_001130678.1	16	aTg/aCg																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197400	26197400	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	128	174	0	ENST00000356476.2:c.79C>T	p.Arg27Ter	p.R27*	ENST00000356476		27	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860647	151860647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	224	347	0	ENST00000262189.6:c.10015A>T	p.Ser3339Cys	p.S3339C	ENST00000262189	NM_170606.2	3339	Agt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0015558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	70	929	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
HGF	3082	MSKCC	GRCh37	7	81374324	81374324	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	33	252	0	ENST00000222390.5:c.738G>C	p.Leu246Phe	p.L246F	ENST00000222390	NM_000601.4	246	ttG/ttC																																																																															
MYC	4609	MSKCC	GRCh37	8	128752842	128752842	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	29	318	0	ENST00000377970.2:c.1003C>G	p.Pro335Ala	p.P335A	ENST00000377970	NM_002467.4	335	Cct/Gct																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0015561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	282	456	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
MGA	23269	MSKCC	GRCh37	15	42042745	42042745	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	149	446	0	ENST00000219905.7:c.6940G>T	p.Asp2314Tyr	p.D2314Y	ENST00000219905	NM_001164273.1	2314	Gat/Tat																																																																															
FANCA	2175	MSKCC	GRCh37	16	89831316	89831316	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	158	480	0	ENST00000389301.3:c.2760G>C	p.Leu920Phe	p.L920F	ENST00000389301	NM_000135.2	920	ttG/ttC																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217806	7217806	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0015561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	213	639	0	ENST00000380728.2:c.204+1G>C		p.X68_splice	ENST00000380728		68																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41280804	41280804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	92	274	0	ENST00000349496.5:c.2317C>T	p.Gln773Ter	p.Q773*	ENST00000349496	NM_001904.3	773	Cag/Tag																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054837	5054837	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	144	439	0	ENST00000381652.3:c.889C>T	p.Gln297Ter	p.Q297*	ENST00000381652	NM_004972.3	297	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	206	413	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0015600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	93	328	0	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat																																																																															
STK11	6794	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1177782647		P-0015600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	955	452	0	ENST00000326873.7:c.842dup	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7573869	7574003	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCTTTCCAACCTAGGAAGGCAGGGGAGTAGGGCCAGGAAGGGGCTGAGGTCACTCACCTGGAGTGAGCCCTGCTCCCCCCTGGCTCCTTCCCAGCCTGGGCATCCTTGAGTTCCAAGGCCTCATTCAGCTCTCG	GGCTTTCCAACCTAGGAAGGCAGGGGAGTAGGGCCAGGAAGGGGCTGAGGTCACTCACCTGGAGTGAGCCCTGCTCCCCCCTGGCTCCTTCCCAGCCTGGGCATCCTTGAGTTCCAAGGCCTCATTCAGCTCTCG	-			P-0015600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	400	173	0	ENST00000269305.4:c.1024_1100+58del		p.X342_splice	ENST00000269305	NM_001126112.2	342																																																																																
CHEK2	11200	MSKCC	GRCh37	22	29095891	29095891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	238	535	0	ENST00000328354.6:c.943G>T	p.Gly315Trp	p.G315W	ENST00000328354	NM_007194.3	315	Ggg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	127	304	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579307	7579320	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGACCGTGCAAGT	CTGACCGTGCAAGT	-			P-0015675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	120	209	0	ENST00000269305.4:c.367_375+5del		p.X123_splice	ENST00000269305	NM_001126112.2	123																																																																																
UPF1	5976	MSKCC	GRCh37	19	18965963	18965963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	145	391	0	ENST00000262803.5:c.1456C>T	p.Pro486Ser	p.P486S	ENST00000262803	NM_002911.3	486	Cca/Tca																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155322	185155322	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779365471		P-0015675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	176	241	0	ENST00000265026.3:c.563G>A	p.Arg188Gln	p.R188Q	ENST00000265026	NM_004721.4	188	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097801	27097801	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	100	365	0	ENST00000324856.7:c.3391del	p.Gln1131SerfsTer30	p.Q1131Sfs*30	ENST00000324856	NM_006015.4	1130	atC/at																																																																															
TET1	80312	MSKCC	GRCh37	10	70450808	70450808	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	195	394	0	ENST00000373644.4:c.5648T>G	p.Met1883Arg	p.M1883R	ENST00000373644	NM_030625.2	1883	aTg/aGg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59924533	59924533	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730881624		P-0015689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1282	77	454	0	ENST00000259008.2:c.556A>G	p.Lys186Glu	p.K186E	ENST00000259008	NM_032043.2	186	Aaa/Gaa																																																																															
ARAF	369	MSKCC	GRCh37	X	47430352	47430352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	389	795	3	ENST00000377045.4:c.1627C>T	p.Arg543Trp	p.R543W	ENST00000377045	NM_001654.4	543	Cgg/Tgg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437363	110437373	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGTCGGTGC	GCTGTCGGTGC	A			P-0015689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	59	201	0	ENST00000375856.3:c.1028_1038delinsT	p.Arg343LeufsTer45	p.R343Lfs*45	ENST00000375856	NM_003749.2	343	cGCACCGACAGC/cT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0015692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	904	920	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
HRAS	3265	MSKCC	GRCh37	11	532668	532668	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	526	987	0	ENST00000311189.7:c.538G>C	p.Gly180Arg	p.G180R	ENST00000311189		180	Ggc/Cgc																																																																															
RB1	5925	MSKCC	GRCh37	13	48951052	48951052	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0015692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	88	223	1	ENST00000267163.4:c.1216-2A>T		p.X406_splice	ENST00000267163	NM_000321.2	406																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72984370	72984370	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0015692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	260	396	0	ENST00000268489.5:c.3214A>T	p.Lys1072Ter	p.K1072*	ENST00000268489	NM_006885.3	1072	Aag/Tag																																																																															
INSR	3643	MSKCC	GRCh37	19	7117163	7117163	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	164	711	0	ENST00000302850.5:c.4053C>G	p.Phe1351Leu	p.F1351L	ENST00000302850	NM_000208.2	1351	ttC/ttG																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99160381	99160381	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	159	567	0	ENST00000074304.5:c.860G>C	p.Trp287Ser	p.W287S	ENST00000074304	NM_001134224.1	287	tGg/tCg																																																																															
ATR	545	MSKCC	GRCh37	3	142268371	142268371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	161	428	0	ENST00000350721.4:c.3121G>T	p.Val1041Phe	p.V1041F	ENST00000350721	NM_001184.3	1041	Gtc/Ttc																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652068	36652068	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	457	922	1	ENST00000244741.5:c.190G>T	p.Ala64Ser	p.A64S	ENST00000244741	NM_000389.4	64	Gcc/Tcc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395228	139395228	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	537	885	0	ENST00000277541.6:c.5710del	p.Glu1904ArgfsTer77	p.E1904Rfs*77	ENST00000277541	NM_017617.3	1904	Gag/ag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881392	37881392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	1162	820	0	ENST00000269571.5:c.2584A>G	p.Thr862Ala	p.T862A	ENST00000269571		862	Aca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577563	7577565	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0015711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	494	622	1	ENST00000269305.4:c.716_718del	p.Asn239del	p.N239del	ENST00000269305	NM_001126112.2	239	aACAgt/agt																																																																															
RARA	5914	MSKCC	GRCh37	17	38504619	38504619	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1240210247		P-0015711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	294	673	4	ENST00000254066.5:c.230C>T	p.Ser77Leu	p.S77L	ENST00000254066	NM_000964.3	77	tCg/tTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176687122	176687122	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	228	575	1	ENST00000439151.2:c.5099G>T	p.Arg1700Leu	p.R1700L	ENST00000439151	NM_022455.4	1700	cGa/cTa																																																																															
TEK	7010	MSKCC	GRCh37	9	27212851	27212851	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760084463		P-0015711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	615	756	0	ENST00000380036.4:c.2833G>A	p.Ala945Thr	p.A945T	ENST00000380036	NM_000459.3	945	Gct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	176	670	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0015829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	210	812	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123205102	123205102	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	102	725	0	ENST00000218089.9:c.2462T>G	p.Leu821Trp	p.L821W	ENST00000218089	NM_001042749.1	821	tTg/tGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579415	7579415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	238	648	0	ENST00000269305.4:c.272G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tGg/tAg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136019	64136019	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199674030		P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	94	665	1	ENST00000334205.4:c.1280G>A	p.Arg427His	p.R427H	ENST00000334205	NM_003942.2	427	cGc/cAc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900171	101900171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	48	274	0	ENST00000374994.4:c.605C>T	p.Ala202Val	p.A202V	ENST00000374994	NM_004612.2	202	gCg/gTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402517	139402517	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	79	695	1	ENST00000277541.6:c.3400C>T	p.Gln1134Ter	p.Q1134*	ENST00000277541	NM_017617.3	1134	Cag/Tag																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664814	138664814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	61	267	1	ENST00000330315.3:c.751C>A	p.Pro251Thr	p.P251T	ENST00000330315	NM_023067.3	251	Ccg/Acg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797769	32797769	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs78328107		P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	186	617	1	ENST00000374899.4:c.1733C>T	p.Ala578Val	p.A578V	ENST00000374899	NM_018833.2	578	gCg/gTg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9783310	9783310	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	46	747	0	ENST00000377346.4:c.2554A>C	p.Lys852Gln	p.K852Q	ENST00000377346	NM_005026.3	852	Aag/Cag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120497745	120497745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	87	544	1	ENST00000256646.2:c.2137C>T	p.His713Tyr	p.H713Y	ENST00000256646	NM_024408.3	713	Cat/Tat																																																																															
FH	2271	MSKCC	GRCh37	1	241665839	241665839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	79	513	2	ENST00000366560.3:c.1140G>T	p.Met380Ile	p.M380I	ENST00000366560	NM_000143.3	380	atG/atT																																																																															
CCND2	894	MSKCC	GRCh37	12	4385387	4385387	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	76	251	0	ENST00000261254.3:c.411+1G>A		p.X137_splice	ENST00000261254	NM_001759.3	137																																																																																
GLI1	2735	MSKCC	GRCh37	12	57865680	57865680	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	159	876	0	ENST00000228682.2:c.3157C>A	p.Leu1053Met	p.L1053M	ENST00000228682	NM_005269.2	1053	Ctg/Atg																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813309	102813309	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	63	394	0	ENST00000307046.8:c.380C>A	p.Thr127Asn	p.T127N	ENST00000307046	NM_001111285.1	127	aCc/aAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110017	115110017	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	126	944	0	ENST00000257566.3:c.1861A>T	p.Ser621Cys	p.S621C	ENST00000257566	NM_016569.3	621	Agc/Tgc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26911778	26911778	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	64	523	2	ENST00000381527.3:c.203C>A	p.Ala68Glu	p.A68E	ENST00000381527	NM_001260.1	68	gCa/gAa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046560	30046560	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs541601115		P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	92	587	0	ENST00000331968.5:c.2623G>A	p.Glu875Lys	p.E875K	ENST00000331968	NM_002742.2	875	Gag/Aag																																																																															
MAX	4149	MSKCC	GRCh37	14	65544628	65544628	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	49	446	0	ENST00000358664.4:c.295+3G>A		p.X99_splice	ENST00000358664	NM_002382.4	99																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3786051	3786051	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	212	839	0	ENST00000262367.5:c.4714A>T	p.Ser1572Cys	p.S1572C	ENST00000262367	NM_004380.2	1572	Agt/Tgt																																																																															
NUP93	9688	MSKCC	GRCh37	16	56864531	56864531	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	166	546	0	ENST00000308159.5:c.1019G>C	p.Arg340Pro	p.R340P	ENST00000308159	NM_014669.4	340	cGa/cCa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41223042	41223042	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	99	710	0	ENST00000357654.3:c.4889A>G	p.Glu1630Gly	p.E1630G	ENST00000357654	NM_007294.3	1630	gAa/gGa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438224	56438225	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	193	624	2	ENST00000407977.2:c.768_769delinsTT	p.Gly257Cys	p.G257C	ENST00000407977		256	cgGGgt/cgTTgt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5211673	5211673	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	141	622	0	ENST00000357368.4:c.5162G>T	p.Arg1721Leu	p.R1721L	ENST00000357368	NM_002850.3	1721	cGg/cTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906783	50906783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	148	998	1	ENST00000440232.2:c.1171G>A	p.Asp391Asn	p.D391N	ENST00000440232	NM_002691.3	391	Gac/Aac																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25468911	25468911	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	306	817	0	ENST00000264709.3:c.1452del	p.Gln485ArgfsTer166	p.Q485Rfs*166	ENST00000264709	NM_175629.2	484	cgG/cg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128028923	128028923	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	90	641	0	ENST00000285398.2:c.1934G>C	p.Arg645Pro	p.R645P	ENST00000285398	NM_000122.1	645	cGa/cCa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660271	227660271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	87	470	1	ENST00000305123.5:c.3184G>T	p.Gly1062Cys	p.G1062C	ENST00000305123	NM_005544.2	1062	Ggc/Tgc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661380	227661380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	118	438	0	ENST00000305123.5:c.2075G>T	p.Gly692Val	p.G692V	ENST00000305123	NM_005544.2	692	gGg/gTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713377	40713377	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	193	637	0	ENST00000373198.4:c.4138G>C	p.Glu1380Gln	p.E1380Q	ENST00000373198	NM_133170.3	1380	Gag/Cag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730901	40730901	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	158	577	0	ENST00000373198.4:c.3634G>T	p.Asp1212Tyr	p.D1212Y	ENST00000373198	NM_133170.3	1212	Gac/Tac																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46262936	46262936	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	196	537	0	ENST00000371998.3:c.1109A>T	p.Gln370Leu	p.Q370L	ENST00000371998		370	cAg/cTg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62292814	62292814	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	61	304	0	ENST00000482936.1:c.266G>T	p.Trp89Leu	p.W89L	ENST00000482936		89	tGg/tTg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259509	89259509	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	62	384	0	ENST00000336596.2:c.653T>A	p.Met218Lys	p.M218K	ENST00000336596	NM_005233.5	218	aTg/aAg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119666128	119666128	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	43	537	0	ENST00000316626.5:c.353C>A	p.Ser118Tyr	p.S118Y	ENST00000316626		118	tCc/tAc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128199939	128199939	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	61	391	0	ENST00000341105.2:c.1366C>A	p.Pro456Thr	p.P456T	ENST00000341105	NM_032638.4	456	Ccg/Acg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430645	181430645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	136	527	0	ENST00000325404.1:c.497G>T	p.Trp166Leu	p.W166L	ENST00000325404	NM_003106.3	166	tGg/tTg																																																																															
TP63	8626	MSKCC	GRCh37	3	189456518	189456518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	153	540	2	ENST00000264731.3:c.279G>T	p.Met93Ile	p.M93I	ENST00000264731	NM_003722.4	93	atG/atT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231729	66231729	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	45	533	1	ENST00000273854.3:c.1971G>T	p.Glu657Asp	p.E657D	ENST00000273854	NM_004439.5	657	gaG/gaT																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143043316	143043316	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	103	570	0	ENST00000262992.4:c.2100A>T	p.Lys700Asn	p.K700N	ENST00000262992	NM_001101669.1	700	aaA/aaT																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143094911	143094911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	166	524	1	ENST00000262992.4:c.1233G>T	p.Lys411Asn	p.K411N	ENST00000262992	NM_001101669.1	411	aaG/aaT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187525133	187525133	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	120	374	0	ENST00000441802.2:c.10549-2A>T		p.X3517_splice	ENST00000441802	NM_005245.3	3517																																																																																
IL7R	3575	MSKCC	GRCh37	5	35876268	35876268	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	181	533	0	ENST00000303115.3:c.1060G>T	p.Val354Leu	p.V354L	ENST00000303115	NM_002185.3	354	Gta/Tta																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527580	157527580	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	260	635	0	ENST00000346085.5:c.5305G>T	p.Asp1769Tyr	p.D1769Y	ENST00000346085	NM_020732.3	1769	Gac/Tac																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971315	13971315	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	158	438	0	ENST00000405192.2:c.614G>T	p.Arg205Met	p.R205M	ENST00000405192	NM_001163147.1	205	aGg/aTg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729460	41729460	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	81	516	1	ENST00000242208.4:c.1069C>A	p.His357Asn	p.H357N	ENST00000242208	NM_002192.2	357	Cat/Aat																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729999	41729999	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	220	585	0	ENST00000242208.4:c.530A>T	p.Gln177Leu	p.Q177L	ENST00000242208	NM_002192.2	177	cAg/cTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151893043	151893043	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1406863036		P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	93	514	1	ENST00000262189.6:c.4327G>A	p.Asp1443Asn	p.D1443N	ENST00000262189	NM_170606.2	1443	Gac/Aac																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742147	145742147	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs997621519		P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	50	397	0	ENST00000428558.2:c.356C>T	p.Ala119Val	p.A119V	ENST00000428558	NM_004260.3	119	gCc/gTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319966	8319966	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C	rs748716978		P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	54	289	0	ENST00000356435.5:c.5535C>G	p.Ser1845Arg	p.S1845R	ENST00000356435		1845	agC/agG																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8633452	8633452	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	96	441	2	ENST00000356435.5:c.217G>T	p.Glu73Ter	p.E73*	ENST00000356435		73	Gag/Tag																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342662	87342662	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	210	795	0	ENST00000277120.3:c.947A>G	p.Gln316Arg	p.Q316R	ENST00000277120		316	cAg/cGg																																																																															
XIAP	331	MSKCC	GRCh37	X	123019521	123019521	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	72	491	0	ENST00000355640.3:c.9T>A	p.Phe3Leu	p.F3L	ENST00000355640		3	ttT/ttA																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100362	8100362	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	108	913	1	ENST00000346208.3:c.336G>A	p.Trp112Ter	p.W112*	ENST00000346208		112	tgG/tgA																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115843	8115844	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	99	763	0	ENST00000346208.3:c.1191dup	p.Arg398GlnfsTer109	p.R398Qfs*109	ENST00000346208		397	tcc/tCcc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41276073	41276073	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	117	677	0	ENST00000357654.3:c.41T>A	p.Val14Asp	p.V14D	ENST00000357654	NM_007294.3	14	gTc/gAc																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020902	26020902	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	48	291	0	ENST00000357647.3:c.186del	p.Ile63PhefsTer28	p.I63Ffs*28	ENST00000357647	NM_003529.2	62	cTt/ct																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371783	55371783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	54	298	0	ENST00000297316.4:c.473G>A	p.Gly158Asp	p.G158D	ENST00000297316	NM_022454.3	158	gGc/gAc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1314993	1314993	+	downstream_gene_variant	3'Flank	SNP	G	G	A	rs375729637		P-0016093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	54	723	0				ENST00000381566																																																																																		
TSC1	7248	MSKCC	GRCh37	9	135786474	135786496	+	frameshift_variant	Frame_Shift_Del	DEL	AACCATAGATGGGCTCCAAAGAG	AACCATAGATGGGCTCCAAAGAG	T			P-0016093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	66	684	0	ENST00000298552.3:c.1034_1056delinsA	p.Thr345AsnfsTer4	p.T345Nfs*4	ENST00000298552	NM_001162426.1	345	aCTCTTTGGAGCCCATCTATGGTT/aA																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137524714	137524716	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs587776858		P-0016117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	192	641	0	ENST00000367739.4:c.653_655del	p.Glu218del	p.E218del	ENST00000367739	NM_000416.2	218	gAAGga/gga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061152	38061185	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCG	CCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCG	-			P-0016117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	256	212	0	ENST00000250448.2:c.804_837del	p.Cys268Ter	p.C268*	ENST00000250448	NM_004496.3	268	tgCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGG/tg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618817	37618817	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	191	616	1	ENST00000447079.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000447079	NM_015083.1	165	Cag/Tag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627854	37627854	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	517	591	0	ENST00000447079.4:c.1769C>G	p.Ser590Ter	p.S590*	ENST00000447079	NM_015083.1	590	tCa/tGa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38960562	38960562	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	120	402	0	ENST00000357387.3:c.1789A>G	p.Lys597Glu	p.K597E	ENST00000357387	NM_152756.3	597	Aag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	329	698	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	220	599	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913351		P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	76	595	0	ENST00000288602.6:c.1397G>C	p.Gly466Ala	p.G466A	ENST00000288602	NM_004333.4	466	gGa/gCa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220578	1220578	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	197	580	0	ENST00000326873.7:c.598-2A>T		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																																
BRCA2	675	MSKCC	GRCh37	13	32936802	32936802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	67	539	0	ENST00000380152.3:c.7948G>C	p.Glu2650Gln	p.E2650Q	ENST00000380152		2650	Gaa/Caa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098975	178098975	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1328994103		P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	174	411	0	ENST00000397062.3:c.70T>C	p.Trp24Arg	p.W24R	ENST00000397062	NM_006164.4	24	Tgg/Cgg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027676	48027678	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs1377809071		P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	68	390	0	ENST00000234420.5:c.2561_2563del	p.Lys854del	p.K854del	ENST00000234420	NM_000179.2	852	AAG/-																																																																															
APC	324	MSKCC	GRCh37	5	112164664	112164664	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	28	351	1	ENST00000257430.4:c.1742del	p.Lys581ArgfsTer9	p.K581Rfs*9	ENST00000257430	NM_000038.5	580	Aaa/aa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295247	1295247	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	47	319	2				ENST00000310581	NM_198253.2																																																																																	
TNFRSF14	8764	MSKCC	GRCh37	1	2489905	2489905	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	195	497	0	ENST00000355716.4:c.302C>T	p.Pro101Leu	p.P101L	ENST00000355716	NM_003820.2	101	cCa/cTa																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72058650	72058650	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	178	388	0	ENST00000357731.5:c.790C>T	p.Leu264Phe	p.L264F	ENST00000357731	NM_173808.2	264	Ctc/Ttc																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551592	150551592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	222	543	0	ENST00000369026.2:c.415G>T	p.Ala139Ser	p.A139S	ENST00000369026	NM_021960.4	139	Gct/Tct																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845885	156845885	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	440	740	0	ENST00000524377.1:c.1515C>G	p.Ile505Met	p.I505M	ENST00000524377	NM_002529.3	505	atC/atG																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851265	156851265	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	363	512	0	ENST00000524377.1:c.2222C>A	p.Thr741Lys	p.T741K	ENST00000524377	NM_002529.3	741	aCg/aAg																																																																															
RET	5979	MSKCC	GRCh37	10	43596156	43596156	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	86	506	0	ENST00000355710.3:c.323A>G	p.Lys108Arg	p.K108R	ENST00000355710	NM_020975.4	108	aAg/aGg																																																																															
EED	8726	MSKCC	GRCh37	11	85963238	85963238	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	103	566	1	ENST00000263360.6:c.316A>G	p.Lys106Glu	p.K106E	ENST00000263360	NM_003797.3	106	Aaa/Gaa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94211990	94211990	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	125	693	2	ENST00000323929.3:c.455A>T	p.His152Leu	p.H152L	ENST00000323929	NM_005591.3	152	cAc/cTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	163	752	2	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118347560	118347560	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	130	514	0	ENST00000534358.1:c.3197C>A	p.Pro1066His	p.P1066H	ENST00000534358	NM_005933.3	1066	cCc/cAc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287411	46287411	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	108	505	0	ENST00000334344.6:c.5272-2A>T		p.X1758_splice	ENST00000334344	NM_152641.2	1758																																																																																
TBX3	6926	MSKCC	GRCh37	12	115120663	115120663	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	139	770	0	ENST00000257566.3:c.343C>A	p.Gln115Lys	p.Q115K	ENST00000257566	NM_016569.3	115	Cag/Aag																																																																															
POLE	5426	MSKCC	GRCh37	12	133245293	133245293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	296	656	0	ENST00000320574.5:c.1954G>A	p.Ala652Thr	p.A652T	ENST00000320574	NM_006231.2	652	Gct/Act																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562265	21562265	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	159	731	0	ENST00000382592.4:c.1654G>T	p.Glu552Ter	p.E552*	ENST00000382592	NM_014572.2	552	Gag/Tag																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563212	21563212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	137	734	0	ENST00000382592.4:c.707G>T	p.Gly236Val	p.G236V	ENST00000382592	NM_014572.2	236	gGt/gTt																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240127	41240127	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	22	92	0	ENST00000379561.5:c.223A>T	p.Ser75Cys	p.S75C	ENST00000379561	NM_002015.3	75	Agc/Tgc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515352	103515352	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	29	447	0	ENST00000355739.4:c.1853T>C	p.Ile618Thr	p.I618T	ENST00000355739	NM_000123.3	618	aTc/aCc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515442	103515442	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	75	341	0	ENST00000355739.4:c.1943G>C	p.Ser648Thr	p.S648T	ENST00000355739	NM_000123.3	648	aGt/aCt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610405	81610405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	117	575	1	ENST00000298171.2:c.2003C>T	p.Pro668Leu	p.P668L	ENST00000298171	NM_000369.2	668	cCa/cTa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2122253	2122253	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs45462192		P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	216	582	0	ENST00000219476.3:c.2109G>A	p.Trp703Ter	p.W703*	ENST00000219476	NM_000548.3	703	tgG/tgA																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654705	67654705	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	108	647	0	ENST00000264010.4:c.1192A>G	p.Met398Val	p.M398V	ENST00000264010	NM_006565.3	398	Atg/Gtg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992672	72992672	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1474036205		P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	66	598	0	ENST00000268489.5:c.1373C>T	p.Pro458Leu	p.P458L	ENST00000268489	NM_006885.3	458	cCa/cTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29662047	29662047	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	91	502	0	ENST00000358273.4:c.6004C>T	p.Gln2002Ter	p.Q2002*	ENST00000358273	NM_001042492.2	2002	Cag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29683983	29683983	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	232	754	0	ENST00000358273.4:c.7744C>T	p.Gln2582Ter	p.Q2582*	ENST00000358273	NM_001042492.2	2582	Cag/Tag																																																																															
EZH1	2145	MSKCC	GRCh37	17	40858120	40858120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	159	715	1	ENST00000428826.2:c.1744G>A	p.Asp582Asn	p.D582N	ENST00000428826		582	Gac/Aac																																																																															
BRCA1	672	MSKCC	GRCh37	17	41226398	41226398	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs41293457		P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	161	783	0	ENST00000357654.3:c.4625C>G	p.Ser1542Cys	p.S1542C	ENST00000357654	NM_007294.3	1542	tCt/tGt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376212	15376212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	58	341	0	ENST00000263377.2:c.802del	p.Val268TyrfsTer15	p.V268Yfs*15	ENST00000263377	NM_058243.2	268	Gta/ta																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52723068	52723068	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1486388431		P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	57	404	0	ENST00000322088.6:c.1253G>A	p.Arg418Gln	p.R418Q	ENST00000322088	NM_014225.5	418	cGg/cAg																																																																															
ALK	238	MSKCC	GRCh37	2	29455173	29455173	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746442213		P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	97	446	0	ENST00000389048.3:c.2629G>A	p.Ala877Thr	p.A877T	ENST00000389048	NM_004304.4	877	Gca/Aca																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46574119	46574119	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	75	664	0	ENST00000263734.3:c.134A>G	p.His45Arg	p.H45R	ENST00000263734	NM_001430.4	45	cAc/cGc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46603815	46603815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	117	650	1	ENST00000263734.3:c.1172C>A	p.Thr391Asn	p.T391N	ENST00000263734	NM_001430.4	391	aCc/aAc																																																																															
BARD1	580	MSKCC	GRCh37	2	215593669	215593669	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	161	438	0	ENST00000260947.4:c.2065G>C	p.Asp689His	p.D689H	ENST00000260947	NM_000465.2	689	Gac/Cac																																																																															
NF2	4771	MSKCC	GRCh37	22	30054189	30054189	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	77	431	0	ENST00000338641.4:c.611A>G	p.Glu204Gly	p.E204G	ENST00000338641	NM_000268.3	204	gAa/gGa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880886	134880886	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	196	532	0	ENST00000398015.3:c.1449G>T	p.Met483Ile	p.M483I	ENST00000398015	NM_004441.4	483	atG/atT																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182665061	182665061	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	133	724	0	ENST00000292782.4:c.665T>C	p.Met222Thr	p.M222T	ENST00000292782	NM_020640.2	222	aTg/aCg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185167696	185167696	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	241	569	0	ENST00000265026.3:c.1019G>T	p.Gly340Val	p.G340V	ENST00000265026	NM_004721.4	340	gGa/gTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542342	187542342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	55	387	0	ENST00000441802.2:c.5398G>T	p.Asp1800Tyr	p.D1800Y	ENST00000441802	NM_005245.3	1800	Gat/Tat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557177	187557177	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	82	465	0	ENST00000441802.2:c.4183+2T>C		p.X1395_splice	ENST00000441802	NM_005245.3	1395																																																																																
RICTOR	253260	MSKCC	GRCh37	5	38959914	38959914	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	74	463	0	ENST00000357387.3:c.2018T>C	p.Val673Ala	p.V673A	ENST00000357387	NM_152756.3	673	gTt/gCt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39002649	39002649	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	226	562	0	ENST00000357387.3:c.380A>G	p.Tyr127Cys	p.Y127C	ENST00000357387	NM_152756.3	127	tAt/tGt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562742	176562742	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	504	789	0	ENST00000439151.2:c.638G>T	p.Ser213Ile	p.S213I	ENST00000439151	NM_022455.4	213	aGc/aTc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93964470	93964470	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	107	616	0	ENST00000369303.4:c.2427G>C	p.Gln809His	p.Q809H	ENST00000369303	NM_004440.3	809	caG/caC																																																																															
ROS1	6098	MSKCC	GRCh37	6	117642549	117642549	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs867259158		P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	120	738	0	ENST00000368508.3:c.5650A>G	p.Arg1884Gly	p.R1884G	ENST00000368508	NM_002944.2	1884	Aga/Gga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962396	2962396	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	62	493	0	ENST00000396946.4:c.2143-2A>C		p.X715_splice	ENST00000396946	NM_032415.4	715																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106508158	106508158	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs144650421		P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	37	235	0	ENST00000359195.3:c.152G>T	p.Cys51Phe	p.C51F	ENST00000359195	NM_002649.2	51	tGc/tTc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570329	87570329	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	94	672	0	ENST00000277120.3:c.2069A>G	p.His690Arg	p.H690R	ENST00000277120		690	cAc/cGc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135782740	135782742	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	366	527	0	ENST00000298552.3:c.1279_1281del	p.Ser427del	p.S427del	ENST00000298552	NM_001162426.1	427	TCT/-																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321322	1321322	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	251	576	0	ENST00000381566.1:c.433G>T	p.Asp145Tyr	p.D145Y	ENST00000381566		145	Gat/Tat																																																																															
MED12	9968	MSKCC	GRCh37	X	70345936	70345936	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	269	310	0	ENST00000374080.3:c.2473A>T	p.Thr825Ser	p.T825S	ENST00000374080		825	Act/Tct																																																																															
FLT3	2322	MSKCC	GRCh37	13	28592724	28592725	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AC	AC	T			P-0016171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	111	533	0	ENST00000241453.7:c.2420_2421delinsA	p.Cys807Ter	p.C807*	ENST00000241453	NM_004119.2	807	tGT/tA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	557	748	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	362	710	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576120	88576120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147160868		P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	114	706	0	ENST00000360948.2:c.1553G>A	p.Arg518His	p.R518H	ENST00000360948	NM_001012338.2	518	cGt/cAt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221228	1221228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	155	700	0	ENST00000326873.7:c.751G>T	p.Gly251Cys	p.G251C	ENST00000326873	NM_000455.4	251	Ggt/Tgt																																																																															
RET	5979	MSKCC	GRCh37	10	43615044	43615044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	109	629	0	ENST00000355710.3:c.2458C>T	p.Arg820Cys	p.R820C	ENST00000355710	NM_020975.4	820	Cgc/Tgc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998264	100998264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	47	195	0	ENST00000325455.5:c.1538C>A	p.Pro513His	p.P513H	ENST00000325455	NM_001202474.3	513	cCt/cAt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52702643	52702643	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	164	495	0	ENST00000394830.3:c.255T>A	p.Tyr85Ter	p.Y85*	ENST00000394830	NM_018313.4	85	taT/taA																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515154	31515154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	299	798	0	ENST00000344624.3:c.1231G>T	p.Val411Leu	p.V411L	ENST00000344624		411	Gtg/Ttg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69000039	69000039	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	465	481	0	ENST00000288368.4:c.2108G>T	p.Gly703Val	p.G703V	ENST00000288368	NM_024870.2	703	gGa/gTa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21636316	21636316	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	118	591	0	ENST00000421138.2:c.694A>T	p.Arg232Ter	p.R232*	ENST00000421138		232	Aga/Tga																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247478	71247478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	171	623	0	ENST00000318789.4:c.55G>T	p.Gly19Trp	p.G19W	ENST00000318789	NM_032682.5	19	Ggg/Tgg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141089	55141089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	109	450	0	ENST00000257290.5:c.1735C>A	p.Gln579Lys	p.Q579K	ENST00000257290	NM_006206.4	579	Cag/Aag																																																																															
KDR	3791	MSKCC	GRCh37	4	55955945	55955945	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	137	579	0	ENST00000263923.4:c.3217del	p.Ala1073ProfsTer29	p.A1073Pfs*29	ENST00000263923	NM_002253.2	1073	Gcc/cc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467794	66467794	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	94	410	0	ENST00000273854.3:c.475G>T	p.Asp159Tyr	p.D159Y	ENST00000273854	NM_004439.5	159	Gat/Tat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187525001	187525001	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	125	612	2	ENST00000441802.2:c.10679C>A	p.Ser3560Ter	p.S3560*	ENST00000441802	NM_005245.3	3560	tCa/tAa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149499121	149499121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	111	487	1	ENST00000261799.4:c.2707C>A	p.Pro903Thr	p.P903T	ENST00000261799	NM_002609.3	903	Cct/Act																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874746	151874746	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	176	334	0	ENST00000262189.6:c.7792G>T	p.Asp2598Tyr	p.D2598Y	ENST00000262189	NM_170606.2	2598	Gac/Tac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	259	546	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	250	704	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468490	89468490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	127	555	2	ENST00000336596.2:c.2024G>T	p.Gly675Val	p.G675V	ENST00000336596	NM_005233.5	675	gGa/gTa																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115262360	115262360	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	82	511	0	ENST00000438362.2:c.2194G>C	p.Gly732Arg	p.G732R	ENST00000438362	NM_001242891.1	732	Ggc/Cgc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176145047	176145047	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	110	578	0	ENST00000367669.3:c.564G>T	p.Leu188Phe	p.L188F	ENST00000367669	NM_022457.5	188	ttG/ttT																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245192	46245192	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	122	464	0	ENST00000334344.6:c.3286C>T	p.Gln1096Ter	p.Q1096*	ENST00000334344	NM_152641.2	1096	Cag/Tag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246344	46246344	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	111	491	1	ENST00000334344.6:c.4438G>T	p.Gly1480Ter	p.G1480*	ENST00000334344	NM_152641.2	1480	Gga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56494854	56494854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	97	462	0	ENST00000267101.3:c.3211G>C	p.Val1071Leu	p.V1071L	ENST00000267101	NM_001982.3	1071	Gtt/Ctt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112032	115112032	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	118	635	1	ENST00000257566.3:c.1708C>A	p.Leu570Met	p.L570M	ENST00000257566	NM_016569.3	570	Ctg/Atg																																																																															
RB1	5925	MSKCC	GRCh37	13	48941675	48941675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	33	370	0	ENST00000267163.4:c.985A>G	p.Lys329Glu	p.K329E	ENST00000267163	NM_000321.2	329	Aaa/Gaa																																																																															
MGA	23269	MSKCC	GRCh37	15	41961400	41961400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	192	392	0	ENST00000219905.7:c.308G>T	p.Arg103Leu	p.R103L	ENST00000219905	NM_001164273.1	103	cGc/cTc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2220715	2220715	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	73	392	0	ENST00000326181.6:c.332A>G	p.Glu111Gly	p.E111G	ENST00000326181	NM_032271.2	111	gAg/gGg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858649	9858649	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778940856		P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	78	405	0	ENST00000330684.3:c.2752C>T	p.Pro918Ser	p.P918S	ENST00000330684	NM_001134407.1	918	Ccc/Tcc																																																																															
NF1	4763	MSKCC	GRCh37	17	29676230	29676230	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	210	607	0	ENST00000358273.4:c.7282A>T	p.Lys2428Ter	p.K2428*	ENST00000358273	NM_001042492.2	2428	Aaa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29683558	29683558	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	272	647	0	ENST00000358273.4:c.7701del	p.Met2569Ter	p.M2569*	ENST00000358273	NM_001042492.2	2566	Ccc/cc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395769	45395769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	79	501	0	ENST00000262160.6:c.365G>A	p.Gly122Glu	p.G122E	ENST00000262160	NM_005901.5	122	gGa/gAa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244098	5244098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	217	612	0	ENST00000357368.4:c.1384G>T	p.Val462Phe	p.V462F	ENST00000357368	NM_002850.3	462	Gtc/Ttc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918147	50918147	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	437	729	2	ENST00000440232.2:c.2464G>T	p.Asp822Tyr	p.D822Y	ENST00000440232	NM_002691.3	822	Gac/Tac																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47607083	47607083	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778825812		P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	89	521	0	ENST00000263735.4:c.833C>T	p.Ala278Val	p.A278V	ENST00000263735	NM_002354.2	278	gCa/gTa																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47613751	47613751	+	stop_lost	Nonstop_Mutation	SNP	A	A	T			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	172	464	0	ENST00000263735.4:c.944A>T	p.Ter315LeuextTer12	p.*315Lext*12	ENST00000263735	NM_002354.2	315	tAa/tTa																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72891517	72891517	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1173444435		P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	124	549	0	ENST00000325599.8:c.245G>C	p.Gly82Ala	p.G82A	ENST00000325599	NM_018130.2	82	gGc/gCc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670469	134670469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	241	520	1	ENST00000398015.3:c.380C>A	p.Ala127Asp	p.A127D	ENST00000398015	NM_004441.4	127	gCc/gAc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1977109	1977124	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCGGGGATAGACCA	CCTCGGGGATAGACCA	-			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	277	779	0	ENST00000382895.3:c.3603_3618del	p.Phe1201LeufsTer123	p.F1201Lfs*123	ENST00000382895	NM_133330.2	1201	ttCCTCGGGGATAGACCA/tt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143003199	143003199	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	193	471	0	ENST00000262992.4:c.2627T>A	p.Leu876Gln	p.L876Q	ENST00000262992	NM_001101669.1	876	cTg/cAg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007369	143007369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	87	415	0	ENST00000262992.4:c.2415G>T	p.Leu805Phe	p.L805F	ENST00000262992	NM_001101669.1	805	ttG/ttT																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149452879	149452879	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	193	568	0	ENST00000286301.3:c.1067C>A	p.Thr356Asn	p.T356N	ENST00000286301	NM_005211.3	356	aCc/aAc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149498414	149498414	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	222	498	0	ENST00000261799.4:c.2800T>A	p.Tyr934Asn	p.Y934N	ENST00000261799	NM_002609.3	934	Tat/Aat																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157517390	157517390	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	131	582	0	ENST00000346085.5:c.3954G>C	p.Met1318Ile	p.M1318I	ENST00000346085	NM_020732.3	1318	atG/atC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879363	151879363	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	159	428	0	ENST00000262189.6:c.5582G>C	p.Arg1861Pro	p.R1861P	ENST00000262189	NM_170606.2	1861	cGg/cCg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87317294	87317294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	273	579	0	ENST00000277120.3:c.319G>T	p.Ala107Ser	p.A107S	ENST00000277120		107	Gct/Tct																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039610	47039610	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	185	279	0	ENST00000329236.7:c.829-1G>T		p.X277_splice	ENST00000329236	NM_001204466.1	277																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0016181-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			854	231	949	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99156068	99156068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016181-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			550	113	652	0	ENST00000074304.5:c.748G>A	p.Ala250Thr	p.A250T	ENST00000074304	NM_001134224.1	250	Gca/Aca																																																																															
KDR	3791	MSKCC	GRCh37	4	55955966	55955966	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757722266		P-0016181-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			804	105	670	0	ENST00000263923.4:c.3196C>T	p.Arg1066Cys	p.R1066C	ENST00000263923	NM_002253.2	1066	Cgc/Tgc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240171	41240171	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1291996842		P-0016181-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			52	18	64	0	ENST00000379561.5:c.179C>T	p.Ser60Leu	p.S60L	ENST00000379561	NM_002015.3	60	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574035	7574035	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0016181-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	384	720	1	ENST00000269305.4:c.994-2A>T		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
WT1	7490	MSKCC	GRCh37	11	32456582	32456582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016181-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			43	21	40	0	ENST00000332351.3:c.310C>T	p.Pro104Ser	p.P104S	ENST00000332351	NM_024426.4	104	Ccg/Tcg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610447	81610447	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016181-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			768	97	562	0	ENST00000298171.2:c.2045C>A	p.Thr682Asn	p.T682N	ENST00000298171	NM_000369.2	682	aCc/aAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42028481	42028481	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016181-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			301	459	643	1	ENST00000219905.7:c.4019C>G	p.Ser1340Ter	p.S1340*	ENST00000219905	NM_001164273.1	1340	tCa/tGa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813818	50813818	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016181-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			680	324	921	1	ENST00000398568.2:c.1372G>T	p.Ala458Ser	p.A458S	ENST00000398568	NM_001042412.1	458	Gcc/Tcc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78796914	78796914	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016181-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	370	705	4	ENST00000306801.3:c.1027G>T	p.Val343Leu	p.V343L	ENST00000306801	NM_020761.2	343	Gtg/Ttg																																																																															
KIT	3815	MSKCC	GRCh37	4	55589827	55589827	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016181-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			792	96	542	0	ENST00000288135.5:c.1309A>G	p.Thr437Ala	p.T437A	ENST00000288135	NM_000222.2	437	Aca/Gca																																																																															
NSD1	64324	MSKCC	GRCh37	5	176722098	176722098	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016181-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			362	535	553	2	ENST00000439151.2:c.7729G>T	p.Val2577Leu	p.V2577L	ENST00000439151	NM_022455.4	2577	Gtg/Ttg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679762	30679762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016181-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			734	90	650	0	ENST00000376406.3:c.1957G>C	p.Asp653His	p.D653H	ENST00000376406	NM_014641.2	653	Gac/Cac																																																																															
HGF	3082	MSKCC	GRCh37	7	81346637	81346637	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016181-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			393	285	430	0	ENST00000222390.5:c.1316A>C	p.Tyr439Ser	p.Y439S	ENST00000222390	NM_000601.4	439	tAc/tCc																																																																															
BRAF	673	MSKCC	GRCh37	7	140500172	140500172	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016181-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1230	218	1029	0	ENST00000288602.6:c.970G>C	p.Asp324His	p.D324H	ENST00000288602	NM_004333.4	324	Gac/Cac																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146952	38146952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016181-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1417	197	1022	2	ENST00000317025.8:c.3190G>A	p.Glu1064Lys	p.E1064K	ENST00000317025	NM_023034.1	1064	Gaa/Aaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68939463	68939463	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016181-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			646	476	622	0	ENST00000288368.4:c.448A>G	p.Met150Val	p.M150V	ENST00000288368	NM_024870.2	150	Atg/Gtg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164505	47164505	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	86	319	0	ENST00000409792.3:c.1621C>T	p.Arg541Ter	p.R541*	ENST00000409792	NM_014159.6	541	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	463	662	1	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023909	27023923	+	inframe_deletion	In_Frame_Del	DEL	GCTGCGGCGGCGGCA	GCTGCGGCGGCGGCA	-	rs751352361		P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	13	36	0	ENST00000324856.7:c.1029_1043del	p.Ala345_Ala349del	p.A345_A349del	ENST00000324856	NM_006015.4	339	GCTGCGGCGGCGGCA/-																																																																															
NF1	4763	MSKCC	GRCh37	17	29654737	29654737	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs771529172		P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	262	319	0	ENST00000358273.4:c.5489G>T	p.Arg1830Leu	p.R1830L	ENST00000358273	NM_001042492.2	1830	cGc/cTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521481	8521481	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760428875		P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	154	530	1	ENST00000356435.5:c.757G>A	p.Val253Ile	p.V253I	ENST00000356435		253	Gtt/Att																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100408	8100408	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	437	708	3	ENST00000346208.3:c.382G>T	p.Gly128Trp	p.G128W	ENST00000346208		128	Ggg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259745	16259745	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	395	591	1	ENST00000375759.3:c.7010G>T	p.Arg2337Leu	p.R2337L	ENST00000375759	NM_015001.2	2337	cGa/cTa																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439770	51439772	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	185	201	0	ENST00000262662.1:c.338_340del	p.Glu113del	p.E113del	ENST00000262662		112	aAAGaa/aaa																																																																															
JUN	3725	MSKCC	GRCh37	1	59248628	59248628	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	725	667	0	ENST00000371222.2:c.115A>C	p.Thr39Pro	p.T39P	ENST00000371222	NM_002228.3	39	Acc/Ccc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65311249	65311249	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1312736393		P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	138	449	0	ENST00000342505.4:c.2062A>G	p.Thr688Ala	p.T688A	ENST00000342505	NM_002227.2	688	Aca/Gca																																																																															
AKT3	10000	MSKCC	GRCh37	1	243675649	243675650	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	77	322	0	ENST00000263826.5:c.1330_1331del	p.Ile444TyrfsTer6	p.I444Yfs*6	ENST00000263826	NM_005465.4	444	ATt/t																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741885	17741885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	20	47	0	ENST00000250003.3:c.556C>A	p.Pro186Thr	p.P186T	ENST00000250003	NM_002478.4	186	Ccg/Acg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245280	46245280	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	262	363	2	ENST00000334344.6:c.3374A>T	p.Gln1125Leu	p.Q1125L	ENST00000334344	NM_152641.2	1125	cAa/cTa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246477	46246477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	266	306	1	ENST00000334344.6:c.4571G>T	p.Arg1524Met	p.R1524M	ENST00000334344	NM_152641.2	1524	aGg/aTg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28601364	28601364	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	164	435	0	ENST00000241453.7:c.2068A>G	p.Ile690Val	p.I690V	ENST00000241453	NM_004119.2	690	Att/Gtt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914376	32914376	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs747406932		P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	126	416	0	ENST00000380152.3:c.5884A>G	p.Ile1962Val	p.I1962V	ENST00000380152		1962	Ata/Gta																																																																															
RB1	5925	MSKCC	GRCh37	13	48947540	48947540	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	528	530	0	ENST00000267163.4:c.1128-1G>T		p.X376_splice	ENST00000267163	NM_000321.2	376																																																																																
TSHR	7253	MSKCC	GRCh37	14	81528510	81528510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	421	443	0	ENST00000298171.2:c.189C>A	p.His63Gln	p.H63Q	ENST00000298171	NM_000369.2	63	caC/caA																																																																															
MGA	23269	MSKCC	GRCh37	15	42053954	42053954	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	108	364	0	ENST00000219905.7:c.7418del	p.Gly2473AspfsTer2	p.G2473Dfs*2	ENST00000219905	NM_001164273.1	2472	caG/ca																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678358	88678358	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	369	475	0	ENST00000360948.2:c.1178del	p.Gly393AlafsTer21	p.G393Afs*21	ENST00000360948	NM_001012338.2	393	gGc/gc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88690618	88690618	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	243	393	0	ENST00000360948.2:c.412C>G	p.Arg138Gly	p.R138G	ENST00000360948	NM_001012338.2	138	Cgg/Ggg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99478243	99478243	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	86	238	0	ENST00000268035.6:c.3147C>G	p.Asn1049Lys	p.N1049K	ENST00000268035	NM_000875.3	1049	aaC/aaG																																																																															
CDH1	999	MSKCC	GRCh37	16	68835791	68835791	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376152506		P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	319	443	0	ENST00000261769.5:c.382C>T	p.His128Tyr	p.H128Y	ENST00000261769	NM_004360.3	128	Cat/Tat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829422	72829422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	302	314	0	ENST00000268489.5:c.7159C>T	p.Pro2387Ser	p.P2387S	ENST00000268489	NM_006885.3	2387	Ccc/Tcc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81891922	81891922	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	417	511	0	ENST00000359376.3:c.392A>T	p.Gln131Leu	p.Q131L	ENST00000359376	NM_002661.3	131	cAg/cTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81891959	81891959	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	334	353	2	ENST00000359376.3:c.429G>T	p.Glu143Asp	p.E143D	ENST00000359376	NM_002661.3	143	gaG/gaT																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836401	89836401	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	458	353	0	ENST00000389301.3:c.2348G>C	p.Gly783Ala	p.G783A	ENST00000389301	NM_000135.2	783	gGg/gCg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983735	15983735	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	251	359	0	ENST00000268712.3:c.3387A>T	p.Glu1129Asp	p.E1129D	ENST00000268712	NM_006311.3	1129	gaA/gaT																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245620	41245620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	356	514	0	ENST00000357654.3:c.1928G>A	p.Ser643Asn	p.S643N	ENST00000357654	NM_007294.3	643	aGt/aAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437549	56437549	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	198	551	2	ENST00000407977.2:c.913C>T	p.Gln305Ter	p.Q305*	ENST00000407977		305	Cag/Tag																																																																															
CENPA	1058	MSKCC	GRCh37	2	27009138	27009138	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	128	139	1	ENST00000335756.4:c.74G>T	p.Gly25Val	p.G25V	ENST00000335756	NM_001809.3	25	gGc/gTc																																																																															
ALK	238	MSKCC	GRCh37	2	29416141	29416141	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs753750497		P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	234	391	0	ENST00000389048.3:c.4812C>A	p.Tyr1604Ter	p.Y1604*	ENST00000389048	NM_004304.4	1604	taC/taA																																																																															
TOP1	7150	MSKCC	GRCh37	20	39708734	39708734	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	483	540	0	ENST00000361337.2:c.345A>T	p.Gln115His	p.Q115H	ENST00000361337	NM_003286.2	115	caA/caT																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264184	46264184	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	249	185	0	ENST00000371998.3:c.1231A>T	p.Met411Leu	p.M411L	ENST00000371998		411	Atg/Ttg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47129661	47129661	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	376	561	0	ENST00000409792.3:c.5219G>T	p.Arg1740Leu	p.R1740L	ENST00000409792	NM_014159.6	1740	cGg/cTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55970819	55970819	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	140	385	0	ENST00000263923.4:c.1978A>T	p.Thr660Ser	p.T660S	ENST00000263923	NM_002253.2	660	Aca/Tca																																																																															
IL7R	3575	MSKCC	GRCh37	5	35857105	35857105	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs776642878		P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	144	268	0	ENST00000303115.3:c.26G>C	p.Gly9Ala	p.G9A	ENST00000303115	NM_002185.3	9	gGc/gCc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67569844	67569844	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	220	204	0	ENST00000274335.5:c.502+3G>T		p.X168_splice	ENST00000274335		168																																																																																
NPM1	4869	MSKCC	GRCh37	5	170819945	170819947	+	inframe_deletion	In_Frame_Del	DEL	GAT	GAT	-	rs764976369		P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	80	263	0	ENST00000296930.5:c.492_494del	p.Asp168del	p.D168del	ENST00000296930	NM_002520.6	163	GAT/-																																																																															
ROS1	6098	MSKCC	GRCh37	6	117707014	117707014	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	633	506	0	ENST00000368508.3:c.2136G>A	p.Trp712Ter	p.W712*	ENST00000368508	NM_002944.2	712	tgG/tgA																																																																															
ESR1	2099	MSKCC	GRCh37	6	152415529	152415529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	216	470	1	ENST00000206249.3:c.1379C>T	p.Thr460Ile	p.T460I	ENST00000206249	NM_000125.3	460	aCa/aTa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467654	50467654	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	381	476	0	ENST00000331340.3:c.889G>T	p.Ala297Ser	p.A297S	ENST00000331340	NM_006060.4	297	Gcc/Tcc																																																																															
HGF	3082	MSKCC	GRCh37	7	81336665	81336665	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1258858592		P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	186	388	2	ENST00000222390.5:c.1557C>A	p.Cys519Ter	p.C519*	ENST00000222390	NM_000601.4	519	tgC/tgA																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554317	141554317	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1133	252	745	0	ENST00000220592.5:c.1834G>C	p.Ala612Pro	p.A612P	ENST00000220592	NM_012154.3	612	Gcc/Ccc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485243	8485243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	276	472	1	ENST00000356435.5:c.3137C>A	p.Ser1046Tyr	p.S1046Y	ENST00000356435		1046	tCc/tAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8501029	8501029	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs757562644		P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	68	211	0	ENST00000356435.5:c.1853G>T	p.Cys618Phe	p.C618F	ENST00000356435		618	tGc/tTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410720	63410720	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	593	249	0	ENST00000330258.3:c.2447G>T	p.Arg816Leu	p.R816L	ENST00000330258	NM_152424.3	816	cGg/cTg																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123504132	123504134	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs748078276		P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	124	254	0	ENST00000371139.4:c.313_315del	p.Lys105del	p.K105del	ENST00000371139	NM_001114937.2	103	gAGAag/gag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	517	375	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619792	1619792	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	365	625	0	ENST00000344749.5:c.1154del	p.Gly385ValfsTer9	p.G385Vfs*9	ENST00000344749	NM_001136139.2	385	gGt/gt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026871	71026871	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0016226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	147	188	2	ENST00000318789.4:c.1351G>T	p.Asp451Tyr	p.D451Y	ENST00000318789	NM_032682.5	451	Gat/Tat																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187393	38187393	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	236	390	1	ENST00000317025.8:c.1084C>T	p.Gln362Ter	p.Q362*	ENST00000317025	NM_023034.1	362	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	118	428	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	409	421	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306653	41306653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	166	430	0	ENST00000373198.4:c.1006G>A	p.Glu336Lys	p.E336K	ENST00000373198	NM_133170.3	336	Gag/Aag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2131787	2131787	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1020561347		P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	336	361	0	ENST00000219476.3:c.3802C>T	p.Arg1268Cys	p.R1268C	ENST00000219476	NM_000548.3	1268	Cgc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256832	16256832	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs887977680		P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	381	497	2	ENST00000375759.3:c.4097G>A	p.Arg1366Gln	p.R1366Q	ENST00000375759	NM_015001.2	1366	cGa/cAa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30132948	30132948	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	64	400	2	ENST00000331968.5:c.653C>A	p.Ser218Ter	p.S218*	ENST00000331968	NM_002742.2	218	tCa/tAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827727	72827727	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	34	364	0	ENST00000268489.5:c.8854C>G	p.Gln2952Glu	p.Q2952E	ENST00000268489	NM_006885.3	2952	Caa/Gaa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619264	37619264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2975	228	325	0	ENST00000447079.4:c.940G>A	p.Glu314Lys	p.E314K	ENST00000447079	NM_015083.1	314	Gaa/Aaa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1650196	1650196	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199639167		P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	484	481	0	ENST00000344749.5:c.52G>A	p.Asp18Asn	p.D18N	ENST00000344749	NM_001136139.2	18	Gac/Aac																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271782	18271782	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	T			P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	501	489	0	ENST00000222254.8:c.466+3G>T		p.X156_splice	ENST00000222254	NM_005027.3	156																																																																																
INPP4A	3631	MSKCC	GRCh37	2	99193530	99193530	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	195	387	0	ENST00000074304.5:c.2725G>C	p.Glu909Gln	p.E909Q	ENST00000074304	NM_001134224.1	909	Gag/Cag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165621	47165621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	19	284	0	ENST00000409792.3:c.505C>T	p.His169Tyr	p.H169Y	ENST00000409792	NM_014159.6	169	Cat/Tat																																																																															
TERT	7015	MSKCC	GRCh37	5	1294132	1294132	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147056740		P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	541	606	0	ENST00000310581.5:c.869C>T	p.Ser290Phe	p.S290F	ENST00000310581	NM_198253.2	290	tCt/tTt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509249	106509249	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	365	455	0	ENST00000359195.3:c.1243G>C	p.Glu415Gln	p.E415Q	ENST00000359195	NM_002649.2	415	Gag/Cag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992734	68992734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	230	508	0	ENST00000288368.4:c.1699G>A	p.Glu567Lys	p.E567K	ENST00000288368	NM_024870.2	567	Gag/Aag																																																																															
ARAF	369	MSKCC	GRCh37	X	47424202	47424202	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	47	340	0	ENST00000377045.4:c.207G>C	p.Lys69Asn	p.K69N	ENST00000377045	NM_001654.4	69	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0016296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	187	612	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32945141	32945141	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs886040781		P-0016296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	97	708	2	ENST00000380152.3:c.8536G>T	p.Glu2846Ter	p.E2846*	ENST00000380152		2846	Gag/Tag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198281602	198281602	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	90	535	0	ENST00000335508.6:c.529A>G	p.Lys177Glu	p.K177E	ENST00000335508	NM_012433.2	177	Aaa/Gaa																																																																															
ETV1	2115	MSKCC	GRCh37	7	13978790	13978790	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	119	688	0	ENST00000405192.2:c.317A>C	p.Glu106Ala	p.E106A	ENST00000405192	NM_001163147.1	106	gAa/gCa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46254714	46254714	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	119	488	0	ENST00000334344.6:c.4904T>C	p.Leu1635Pro	p.L1635P	ENST00000334344	NM_152641.2	1635	cTg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577107	7577108	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0016307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	214	874	0	ENST00000269305.4:c.830_831del	p.Cys277SerfsTer28	p.C277Sfs*28	ENST00000269305	NM_001126112.2	277	tGT/t																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41420101	41420101	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	79	316	0	ENST00000373198.4:c.220T>G	p.Phe74Val	p.F74V	ENST00000373198	NM_133170.3	74	Ttc/Gtc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061317	38061317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	360	662	0	ENST00000250448.2:c.672C>A	p.Phe224Leu	p.F224L	ENST00000250448	NM_004496.3	224	ttC/ttA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	48	562	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155700	56155701	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs1338345984		P-0016358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	73	603	0	ENST00000399503.3:c.793_794del	p.Glu265IlefsTer35	p.E265Ifs*35	ENST00000399503	NM_005921.1	264	tcAGaa/tcaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160538	56160577	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAATAAAAAAAAATGTTGTGAAGTTTCAGAGTGGCAGAAT	TAATAAAAAAAAATGTTGTGAAGTTTCAGAGTGGCAGAAT	-			P-0016358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	27	314	0	ENST00000399503.3:c.835-23_851del		p.X279_splice	ENST00000399503	NM_005921.1	279																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151836323	151836323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	62	613	0	ENST00000262189.6:c.14482del	p.Arg4828AlafsTer7	p.R4828Afs*7	ENST00000262189	NM_170606.2	4828	Cgc/gc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0016378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	102	978	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480595	50480595	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	55	906	0	ENST00000394963.4:c.465G>C	p.Arg155Ser	p.R155S	ENST00000394963	NM_003076.4	155	agG/agC																																																																															
SESN1	27244	MSKCC	GRCh37	6	109315722	109315722	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1688	94	1202	0	ENST00000436639.2:c.1063G>T	p.Glu355Ter	p.E355*	ENST00000436639	NM_014454.2	355	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0016398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	59	561	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29556447	29556447	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	86	731	0	ENST00000358273.4:c.2814G>C	p.Lys938Asn	p.K938N	ENST00000358273	NM_001042492.2	938	aaG/aaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	158	426	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604787	48604787	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	149	313	0	ENST00000342988.3:c.1609G>C	p.Asp537His	p.D537H	ENST00000342988	NM_005359.5	537	Gac/Cac																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246498718	246498718	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	152	343	0	ENST00000388985.4:c.287G>T	p.Arg96Ile	p.R96I	ENST00000388985		96	aGa/aTa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67670685	67670685	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	138	430	0	ENST00000264010.4:c.1930del	p.Ala644ProfsTer42	p.A644Pfs*42	ENST00000264010	NM_006565.3	644	Gcc/cc																																																																															
STK11	6794	MSKCC	GRCh37	19	1218419	1218439	+	inframe_deletion	In_Frame_Del	DEL	AATTCAACTACTGAGGAGGTT	AATTCAACTACTGAGGAGGTT	-			P-0016575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	216	406	0	ENST00000326873.7:c.295_315del	p.Ile99_Leu105del	p.I99_L105del	ENST00000326873	NM_000455.4	98	gaAATTCAACTACTGAGGAGGTTa/gaa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210770	36210770	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	161	465	0	ENST00000222270.7:c.521C>G	p.Pro174Arg	p.P174R	ENST00000222270	NM_014727.1	174	cCa/cGa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247453	71247453	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	133	308	0	ENST00000318789.4:c.80T>A	p.Leu27Gln	p.L27Q	ENST00000318789	NM_032682.5	27	cTa/cAa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162189	38162191	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0016575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	153	392	0	ENST00000317025.8:c.2525_2527del	p.Ser842del	p.S842del	ENST00000317025	NM_023034.1	842	tCCTac/tac																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370926	55370926	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	165	358	0	ENST00000297316.4:c.228G>C	p.Met76Ile	p.M76I	ENST00000297316	NM_022454.3	76	atG/atC																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115955	8115956	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	112	376	0	ENST00000346208.3:c.1305dup	p.Ser436LeufsTer71	p.S436Lfs*71	ENST00000346208		434	cac/caCc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530077	63530077	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7960	1643	656	0	ENST00000307078.5:c.2358G>C	p.Leu786Phe	p.L786F	ENST00000307078	NM_004655.3	786	ttG/ttC																																																																															
BTK	695	MSKCC	GRCh37	X	100612524	100612524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	157	403	0	ENST00000308731.7:c.1150G>A	p.Ala384Thr	p.A384T	ENST00000308731	NM_000061.2	384	Gca/Aca																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258696	115258696	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	314	405	0	ENST00000369535.4:c.86T>C	p.Val29Ala	p.V29A	ENST00000369535	NM_002524.4	29	gTa/gCa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850850	63850850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	464	615	1	ENST00000279873.7:c.1628C>T	p.Pro543Leu	p.P543L	ENST00000279873	NM_032199.2	543	cCa/cTa																																																																															
PGR	5241	MSKCC	GRCh37	11	100998537	100998538	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	479	625	1	ENST00000325455.5:c.1264_1265delinsAA	p.Pro422Lys	p.P422K	ENST00000325455	NM_001202474.3	422	CCg/AAg																																																																															
CBL	867	MSKCC	GRCh37	11	119158586	119158586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	479	999	0	ENST00000264033.4:c.1967del	p.Gly656ValfsTer46	p.G656Vfs*46	ENST00000264033	NM_005188.3	656	Ggt/gt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112127	115112127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	1257	1053	0	ENST00000257566.3:c.1613G>C	p.Gly538Ala	p.G538A	ENST00000257566	NM_016569.3	538	gGc/gCc																																																																															
RB1	5925	MSKCC	GRCh37	13	49027168	49027168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913305		P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	177	797	1	ENST00000267163.4:c.1735C>T	p.Arg579Ter	p.R579*	ENST00000267163	NM_000321.2	579	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031814	10031814	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	561	589	0	ENST00000330684.3:c.1007+2T>A		p.X336_splice	ENST00000330684	NM_001134407.1	336																																																																																
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782177		P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	1031	1238	4	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600470	10600470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	1434	992	0	ENST00000171111.5:c.1385G>T	p.Gly462Val	p.G462V	ENST00000171111	NM_203500.1	462	gGg/gTg																																																																															
CD79A	973	MSKCC	GRCh37	19	42383074	42383074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	183	438	2	ENST00000221972.3:c.94G>T	p.Ala32Ser	p.A32S	ENST00000221972	NM_021601.3	32	Gcc/Tcc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026871	71026871	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	138	343	1	ENST00000318789.4:c.1351G>T	p.Asp451Tyr	p.D451Y	ENST00000318789	NM_032682.5	451	Gat/Tat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549409	187549409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	559	721	2	ENST00000441802.2:c.4709G>T	p.Arg1570Leu	p.R1570L	ENST00000441802	NM_005245.3	1570	cGg/cTg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117746757	117746757	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	228	747	1	ENST00000368508.3:c.63G>C	p.Trp21Cys	p.W21C	ENST00000368508	NM_002944.2	21	tgG/tgC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945004	151945004	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	11	81	0	ENST00000262189.6:c.2515A>T	p.Arg839Ter	p.R839*	ENST00000262189	NM_170606.2	839	Aga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	545	1492	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	173	730	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
RB1	5925	MSKCC	GRCh37	13	48941658	48941658	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs765678030		P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	67	465	0	ENST00000267163.4:c.968A>G	p.Glu323Gly	p.E323G	ENST00000267163	NM_000321.2	323	gAa/gGa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18650569	18650569	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750864969		P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	121	662	1	ENST00000266497.5:c.2780G>A	p.Arg927His	p.R927H	ENST00000266497		927	cGt/cAt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432024	121432024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	333	1358	0	ENST00000257555.6:c.771C>A	p.Asn257Lys	p.N257K	ENST00000257555		257	aaC/aaA																																																																															
TSC2	7249	MSKCC	GRCh37	16	2114373	2114373	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	361	1213	0	ENST00000219476.3:c.1544del	p.Leu515ArgfsTer20	p.L515Rfs*20	ENST00000219476	NM_000548.3	515	cTg/cg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943729	9943729	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	286	840	1	ENST00000330684.3:c.1212C>A	p.Asn404Lys	p.N404K	ENST00000330684	NM_001134407.1	404	aaC/aaA																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976400	18976400	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1297	293	1518	0	ENST00000262803.5:c.3050G>C	p.Arg1017Pro	p.R1017P	ENST00000262803	NM_002911.3	1017	cGt/cCt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661612	227661612	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	121	622	0	ENST00000305123.5:c.1843A>T	p.Met615Leu	p.M615L	ENST00000305123	NM_005544.2	615	Atg/Ttg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47158242	47158242	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	95	519	0	ENST00000409792.3:c.4457A>T	p.Lys1486Met	p.K1486M	ENST00000409792	NM_014159.6	1486	aAg/aTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542429	187542429	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs755310203		P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	178	570	0	ENST00000441802.2:c.5311A>G	p.Thr1771Ala	p.T1771A	ENST00000441802	NM_005245.3	1771	Aca/Gca																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94068039	94068039	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	164	623	0	ENST00000369303.4:c.923C>G	p.Ser308Cys	p.S308C	ENST00000369303	NM_004440.3	308	tCc/tGc																																																																															
HGF	3082	MSKCC	GRCh37	7	81374390	81374390	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	109	697	0	ENST00000222390.5:c.672T>A	p.Asp224Glu	p.D224E	ENST00000222390	NM_000601.4	224	gaT/gaA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1143	3804	664	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578292	7578292	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	C	rs763746485		P-0016747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	190	437	0	ENST00000269305.4:c.560-3T>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
BRAF	673	MSKCC	GRCh37	7	140434494	140434494	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1436193121		P-0016747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	155	341	0	ENST00000288602.6:c.2204G>A	p.Arg735Gln	p.R735Q	ENST00000288602	NM_004333.4	735	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0016763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	727	643	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087551	27087566	+	frameshift_variant	Frame_Shift_Del	DEL	TCTCGCTCAGGACCAC	TCTCGCTCAGGACCAC	-			P-0016763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	271	672	0	ENST00000324856.7:c.2131_2146del	p.Ser711LeufsTer26	p.S711Lfs*26	ENST00000324856	NM_006015.4	709	TCTCGCTCAGGACCACtc/tc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134561	41134561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780271950		P-0016763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	651	498	0	ENST00000379561.5:c.1067C>T	p.Ala356Val	p.A356V	ENST00000379561	NM_002015.3	356	gCc/gTc																																																																															
RB1	5925	MSKCC	GRCh37	13	48919223	48919244	+	frameshift_variant	Frame_Shift_Del	DEL	AAATTCTTTAACTTACTAAAAG	AAATTCTTTAACTTACTAAAAG	-			P-0016763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	261	256	1	ENST00000267163.4:c.393_414del	p.Phe131LeufsTer15	p.F131Lfs*15	ENST00000267163	NM_000321.2	130	AAATTCTTTAACTTACTAAAAGaa/aa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71161707	71161707	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	257	469	0	ENST00000318789.4:c.262G>T	p.Asp88Tyr	p.D88Y	ENST00000318789	NM_032682.5	88	Gac/Tac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152008947	152008947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	403	712	0	ENST00000262189.6:c.675G>A	p.Trp225Ter	p.W225*	ENST00000262189	NM_170606.2	225	tgG/tgA																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161731	56161756	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTTTGTTTCACGCATGTCAAATTC	AAGTTTGTTTCACGCATGTCAAATTC	-			P-0016785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	161	696	0	ENST00000399503.3:c.1228_1253del	p.Lys410SerfsTer7	p.K410Sfs*7	ENST00000399503	NM_005921.1	410	AAGTTTGTTTCACGCATGTCAAATTCt/t																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184142	56184142	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	225	407	0	ENST00000399503.3:c.4347G>A	p.Trp1449Ter	p.W1449*	ENST00000399503	NM_005921.1	1449	tgG/tgA																																																																															
EP300	2033	MSKCC	GRCh37	22	41572413	41572413	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1410	185	494	0	ENST00000263253.7:c.4942C>T	p.Gln1648Ter	p.Q1648*	ENST00000263253	NM_001429.3	1648	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0016795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	288	433	0	ENST00000269305.4:c.686_687del	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271744	18271744	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1310	441	633	0	ENST00000222254.8:c.431C>G	p.Ser144Cys	p.S144C	ENST00000222254	NM_005027.3	144	tCt/tGt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633583	69633583	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	168	194	0	ENST00000334134.2:c.119G>T	p.Gly40Val	p.G40V	ENST00000334134	NM_005247.2	40	gGc/gTc																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226253493	226253493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	164	400	0	ENST00000366813.1:c.265G>A	p.Ala89Thr	p.A89T	ENST00000366813		89	Gct/Act																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925481	114925481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	192	537	0	ENST00000543371.1:c.1559C>T	p.Ser520Phe	p.S520F	ENST00000543371	NM_001198531.1	520	tCc/tTc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112910815	112910817	+	frameshift_variant	Frame_Shift_Del	DEL	ACA	ACA	CC			P-0016795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	262	609	1	ENST00000351677.2:c.824_826delinsCC	p.Asn275ThrfsTer64	p.N275Tfs*64	ENST00000351677	NM_002834.3	275	aACAaa/aCCaa																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281879	49281879	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	135	504	0	ENST00000282018.3:c.926G>C	p.Gly309Ala	p.G309A	ENST00000282018	NM_020377.2	309	gGg/gCg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41256279	41256279	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs80358116		P-0016795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	303	213	0	ENST00000357654.3:c.302-1G>A		p.X101_splice	ENST00000357654	NM_007294.3	101																																																																																
DNMT3B	1789	MSKCC	GRCh37	20	31381390	31381390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	119	372	0	ENST00000328111.2:c.1115C>T	p.Ser372Leu	p.S372L	ENST00000328111	NM_006892.3	372	tCa/tTa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751386	57751386	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	170	228	0	ENST00000274289.3:c.1605G>C	p.Met535Ile	p.M535I	ENST00000274289	NM_006622.3	535	atG/atC																																																																															
MYC	4609	MSKCC	GRCh37	8	128751101	128751101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1221801220		P-0016795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1340	172	480	0	ENST00000377970.2:c.638C>G	p.Pro213Arg	p.P213R	ENST00000377970	NM_002467.4	213	cCt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0016807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	103	514	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
TET1	80312	MSKCC	GRCh37	10	70332909	70332909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	132	713	0	ENST00000373644.4:c.814G>A	p.Glu272Lys	p.E272K	ENST00000373644	NM_030625.2	272	Gag/Aag																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038857	12038857	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G	rs750329786		P-0016807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	250	415	0	ENST00000396373.4:c.1153-3C>G		p.X385_splice	ENST00000396373	NM_001987.4	385																																																																																
MDM2	4193	MSKCC	GRCh37	12	69214123	69214123	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	62	434	0	ENST00000462284.1:c.327C>G	p.Ile109Met	p.I109M	ENST00000462284	NM_002392.5	109	atC/atG																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966313	25966313	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	223	496	0	ENST00000435504.4:c.2893G>C	p.Glu965Gln	p.E965Q	ENST00000435504		965	Gag/Cag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44919298	44919298	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	20	384	0	ENST00000377967.4:c.1226T>C	p.Leu409Pro	p.L409P	ENST00000377967	NM_021140.2	409	cTa/cCa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444737	49444737	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	540	791	0	ENST00000301067.7:c.2729C>G	p.Pro910Arg	p.P910R	ENST00000301067	NM_003482.3	910	cCt/cGt																																																																															
RB1	5925	MSKCC	GRCh37	13	48954343	48954344	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGCGCTCT			P-0016811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	327	378	0	ENST00000267163.4:c.1467_1474dup	p.Glu492AlafsTer6	p.E492Afs*6	ENST00000267163	NM_000321.2	488	-/TGCGCTCT																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3823802	3823802	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	298	381	0	ENST00000262367.5:c.2413del	p.Ala805ArgfsTer2	p.A805Rfs*2	ENST00000262367	NM_004380.2	805	Gcg/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576858	7576858	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	483	447	0	ENST00000269305.4:c.988del	p.Leu330PhefsTer15	p.L330Ffs*15	ENST00000269305	NM_001126112.2	330	Ctt/tt																																																																															
CD79A	973	MSKCC	GRCh37	19	42383230	42383230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	120	460	0	ENST00000221972.3:c.250G>A	p.Gly84Ser	p.G84S	ENST00000221972	NM_021601.3	84	Ggc/Agc																																																																															
CD79A	973	MSKCC	GRCh37	19	42384967	42384967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	123	497	0	ENST00000221972.3:c.601G>A	p.Asp201Asn	p.D201N	ENST00000221972	NM_021601.3	201	Gac/Aac																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375163	31375163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774622592		P-0016811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	123	599	1	ENST00000328111.2:c.560C>T	p.Pro187Leu	p.P187L	ENST00000328111	NM_006892.3	187	cCc/cTc																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114546	73114547	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0016811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	197	193	0	ENST00000356692.5:c.929_930del		p.X310_splice	ENST00000356692		310																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	245	475	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0016815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	278	1050	1	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061222	38061222	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	183	583	0	ENST00000250448.2:c.767A>T	p.Asn256Ile	p.N256I	ENST00000250448	NM_004496.3	256	aAc/aTc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45858935	45858935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	115	824	0	ENST00000391945.4:c.1531C>T	p.Arg511Trp	p.R511W	ENST00000391945	NM_000400.3	511	Cgg/Tgg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526682	106526682	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	69	518	0	ENST00000359195.3:c.2975T>A	p.Leu992His	p.L992H	ENST00000359195	NM_002649.2	992	cTc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	126	2255	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	122	1730	0	ENST00000269305.4:c.532C>G	p.His178Asp	p.H178D	ENST00000269305	NM_001126112.2	178	Cac/Gac																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423511	88423511	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0016838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	91	2056	0	ENST00000360948.2:c.2324C>G	p.Ser775Ter	p.S775*	ENST00000360948	NM_001012338.2	775	tCa/tGa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220382	1220382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	145	1735	1	ENST00000326873.7:c.475C>T	p.Gln159Ter	p.Q159*	ENST00000326873	NM_000455.4	159	Cag/Tag																																																																															
NF2	4771	MSKCC	GRCh37	22	30035169	30035169	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	116	2149	3	ENST00000338641.4:c.331C>T	p.Gln111Ter	p.Q111*	ENST00000338641	NM_000268.3	111	Cag/Tag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63845528	63845528	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs993996582		P-0016838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	92	2351	3	ENST00000279873.7:c.1267C>T	p.Arg423Trp	p.R423W	ENST00000279873	NM_032199.2	423	Cgg/Tgg																																																																															
PGR	5241	MSKCC	GRCh37	11	100962543	100962543	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	137	1935	3	ENST00000325455.5:c.1854C>A	p.Asn618Lys	p.N618K	ENST00000325455	NM_001202474.3	618	aaC/aaA																																																																															
SDHD	6392	MSKCC	GRCh37	11	111965530	111965530	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	44	893	0	ENST00000375549.3:c.316G>T	p.Gly106Cys	p.G106C	ENST00000375549	NM_003002.3	106	Ggc/Tgc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112884083	112884083	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs79203122		P-0016838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	101	1596	0	ENST00000351677.2:c.18G>T	p.Trp6Cys	p.W6C	ENST00000351677	NM_002834.3	6	tgG/tgT																																																																															
POLE	5426	MSKCC	GRCh37	12	133233726	133233726	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	66	1171	0	ENST00000320574.5:c.3578G>C	p.Arg1193Thr	p.R1193T	ENST00000320574	NM_006231.2	1193	aGa/aCa																																																																															
POLE	5426	MSKCC	GRCh37	12	133248909	133248909	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs11833773		P-0016838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	90	1823	0	ENST00000320574.5:c.1687-1G>A		p.X563_splice	ENST00000320574	NM_006231.2	563																																																																																
BLM	641	MSKCC	GRCh37	15	91293133	91293133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	90	1890	3	ENST00000355112.3:c.635C>A	p.Ser212Tyr	p.S212Y	ENST00000355112	NM_000057.2	212	tCc/tAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	341262	341262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	151	2233	0	ENST00000262320.3:c.2222G>T	p.Cys741Phe	p.C741F	ENST00000262320	NM_003502.3	741	tGc/tTc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640400	3640400	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0016838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1325	114	2460	0	ENST00000294008.3:c.3239C>G	p.Ser1080Ter	p.S1080*	ENST00000294008	NM_032444.2	1080	tCa/tGa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777756	3777756	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772690401		P-0016838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1420	176	2885	7	ENST00000262367.5:c.7292C>T	p.Thr2431Met	p.T2431M	ENST00000262367	NM_004380.2	2431	aCg/aTg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40500455	40500455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	116	1724	2	ENST00000264657.5:c.80C>T	p.Pro27Leu	p.P27L	ENST00000264657	NM_139276.2	27	cCa/cTa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58700911	58700911	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	61	1648	0	ENST00000305921.3:c.502C>G	p.Pro168Ala	p.P168A	ENST00000305921	NM_003620.3	168	Cct/Gct																																																																															
AXL	558	MSKCC	GRCh37	19	41744512	41744512	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	140	2008	1	ENST00000301178.4:c.1132G>A	p.Glu378Lys	p.E378K	ENST00000301178	NM_021913.4	378	Gag/Aag																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128016882	128016882	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587778276		P-0016838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	95	1997	0	ENST00000285398.2:c.2207G>C	p.Arg736Thr	p.R736T	ENST00000285398	NM_000122.1	736	aGa/aCa																																																																															
KIT	3815	MSKCC	GRCh37	4	55561734	55561734	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	65	1147	3	ENST00000288135.5:c.124G>T	p.Gly42Ter	p.G42*	ENST00000288135	NM_000222.2	42	Gga/Tga																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196972	138196972	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	64	901	0	ENST00000237289.4:c.634G>T	p.Asp212Tyr	p.D212Y	ENST00000237289	NM_001270507.1	212	Gac/Tac																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128206833	128206833	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	96	1504	0	ENST00000265960.3:c.1390A>G	p.Lys464Glu	p.K464E	ENST00000265960	NM_001006617.1	464	Aaa/Gaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444890	49444893	+	missense_variant	Missense_Mutation	ONP	GGTG	GGTG	TGTC			P-0016838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	112	2113	2	ENST00000301067.7:c.2573_2576delinsGACA	p.Pro858_Pro859delinsArgHis	p.P858_P859delinsRH	ENST00000301067	NM_003482.3	858	cCACCc/cGACAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0016842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	274	356	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857895	9857895	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761399460		P-0016842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	118	334	1	ENST00000330684.3:c.3506G>A	p.Arg1169Gln	p.R1169Q	ENST00000330684	NM_001134407.1	1169	cGg/cAg																																																																															
TET2	54790	MSKCC	GRCh37	4	106164085	106164086	+	splice_donor_variant	Splice_Site	INS	-	-	T	rs1396345080		P-0016842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	50	212	0	ENST00000380013.4:c.3594+2dup		p.X1198_splice	ENST00000380013	NM_001127208.2	1198																																																																																
ERRFI1	54206	MSKCC	GRCh37	1	8075367	8075367	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	38	158	0	ENST00000377482.5:c.202+1G>T		p.X68_splice	ENST00000377482	NM_018948.3	68																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71943361	71943361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	75	350	0	ENST00000298229.2:c.1693G>A	p.Gly565Arg	p.G565R	ENST00000298229	NM_001567.3	565	Gga/Aga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779323	3779323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	97	275	0	ENST00000262367.5:c.5725C>T	p.Pro1909Ser	p.P1909S	ENST00000262367	NM_004380.2	1909	Ccc/Tcc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40469210	40469210	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	84	235	0	ENST00000264657.5:c.2134T>G	p.Cys712Gly	p.C712G	ENST00000264657	NM_139276.2	712	Tgt/Ggt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0016849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	599	456	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2124258	2124258	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768683470		P-0016849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	164	612	0	ENST00000219476.3:c.2413G>A	p.Val805Ile	p.V805I	ENST00000219476	NM_000548.3	805	Gtc/Atc																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518587	69518587	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs114327249		P-0016849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	163	446	1	ENST00000294312.3:c.58G>A	p.Val20Met	p.V20M	ENST00000294312	NM_005117.2	20	Gtg/Atg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12650419	12650419	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	167	353	0	ENST00000251849.4:c.427C>G	p.Arg143Gly	p.R143G	ENST00000251849	NM_002880.3	143	Cgg/Ggg																																																																															
TEK	7010	MSKCC	GRCh37	9	27209227	27209227	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0016849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	150	569	0	ENST00000380036.4:c.2684G>C	p.Arg895Pro	p.R895P	ENST00000380036	NM_000459.3	895	cGa/cCa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340426	8340426	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	299	406	0	ENST00000356435.5:c.5170A>T	p.Thr1724Ser	p.T1724S	ENST00000356435		1724	Acc/Tcc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969494	44969497	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTA	AGTA	-			P-0016883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	576	291	0	ENST00000377967.4:c.4176+3_4176+6del		p.X1392_splice	ENST00000377967	NM_021140.2	1392																																																																																
AR	367	MSKCC	GRCh37	X	66943553	66943553	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs137852580		P-0016883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	358	265	0	ENST00000374690.3:c.2633C>G	p.Thr878Ser	p.T878S	ENST00000374690	NM_000044.3	878	aCt/aGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1269	460	607	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579584	7579585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0016899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	251	501	0	ENST00000269305.4:c.102dup	p.Pro36AlafsTer7	p.P36Afs*7	ENST00000269305	NM_001126112.2	34	-/C																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11552822		P-0016899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	272	441	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	782	629	1	ENST00000397752.3:c.3028G>T	p.Asp1010Tyr	p.D1010Y	ENST00000397752	NM_000245.2	1010	Gat/Tat																																																																															
KIT	3815	MSKCC	GRCh37	4	55575694	55575694	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	213	381	0	ENST00000288135.5:c.1220T>C	p.Val407Ala	p.V407A	ENST00000288135	NM_000222.2	407	gTt/gCt																																																																															
MED12	9968	MSKCC	GRCh37	X	70357757	70357757	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1185	444	666	0	ENST00000374080.3:c.6012del	p.Thr2005ProfsTer6	p.T2005Pfs*6	ENST00000374080		2003	gCc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs876660821		P-0016912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	53	353	0	ENST00000269305.4:c.537T>A	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caA																																																																															
KLF4	9314	MSKCC	GRCh37	9	110251257	110251257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	48	378	0	ENST00000374672.4:c.80C>T	p.Pro27Leu	p.P27L	ENST00000374672	NM_004235.4	27	cCg/cTg																																																																															
PGR	5241	MSKCC	GRCh37	11	100920685	100920685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	181	751	2	ENST00000325455.5:c.2463G>T	p.Met821Ile	p.M821I	ENST00000325455	NM_001202474.3	821	atG/atT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178948044	178948044	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	165	402	0	ENST00000263967.3:c.2816A>G	p.Asp939Gly	p.D939G	ENST00000263967	NM_006218.2	939	gAt/gGt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137309016	137309016	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	309	739	0	ENST00000481739.1:c.623del	p.Glu208GlyfsTer49	p.E208Gfs*49	ENST00000481739	NM_002957.4	208	gAg/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578503	7578503	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	430	1072	0	ENST00000269305.4:c.427del	p.Val143CysfsTer27	p.V143Cfs*27	ENST00000269305	NM_001126112.2	143	Gtg/tg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	389	793	17	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0016973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	117	474	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096252	178096252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	106	469	1	ENST00000397062.3:c.1079C>T	p.Ser360Leu	p.S360L	ENST00000397062	NM_006164.4	360	tCa/tTa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713589	30713589	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	197	419	13	ENST00000359013.4:c.989T>G	p.Leu330Arg	p.L330R	ENST00000359013	NM_001024847.2	330	cTc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579353	7579356	+	protein_altering_variant	In_Frame_Del	DEL	CCAG	CCAG	T			P-0016973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	228	854	5	ENST00000269305.4:c.331_334delinsA	p.Leu111_Gly112delinsSer	p.L111_G112delinsS	ENST00000269305	NM_001126112.2	111	CTGGgc/Agc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73335568	73335571	+	missense_variant	Missense_Mutation	ONP	CCAT	CCAT	ACAA			P-0016973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	244	692	6	ENST00000377767.4:c.2600_2603delinsTTGT	p.Tyr867_Gly868delinsPheVal	p.Y867_G868delinsFV	ENST00000377767	NM_014953.3	867	tATGGt/tTTGTt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30132982	30132982	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	153	467	0	ENST00000331968.5:c.619G>T	p.Val207Phe	p.V207F	ENST00000331968	NM_002742.2	207	Gtt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	399	448	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14629060	14629274	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	GTCCGGGTGGTAGCGCAGCGCCTGGCGGCGGTAGGCCCGCTTGATCTCCTCGTCCGACGCGCCGCGGGCCAGGCCCAACGTCTGGTAGTAGTCTTTACCCATGACCCCCTCCTGCGGCCCGCCGACCCGCTGTCGCCGTCCCCCGGCTCCGCCGCCGACCAGTCCCGGACTCTATATACCCGTCCGGCGGAAGCTTCCAGAGCCCGCCAGCCCCC	GTCCGGGTGGTAGCGCAGCGCCTGGCGGCGGTAGGCCCGCTTGATCTCCTCGTCCGACGCGCCGCGGGCCAGGCCCAACGTCTGGTAGTAGTCTTTACCCATGACCCCCTCCTGCGGCCCGCCGACCCGCTGTCGCCGTCCCCCGGCTCCGCCGCCGACCAGTCCCGGACTCTATATACCCGTCCGGCGGAAGCTTCCAGAGCCCGCCAGCCCCC	-			P-0017046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	104	360	0				ENST00000254322	NM_006145.1			3-Jan																																																																														
APC	324	MSKCC	GRCh37	5	112173299	112173299	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0017046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	210	260	0	ENST00000257430.4:c.2008A>T	p.Lys670Ter	p.K670*	ENST00000257430	NM_000038.5	670	Aaa/Taa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38287398	38287398	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778531708		P-0017046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	496	352	1	ENST00000425967.3:c.259C>T	p.Arg87Cys	p.R87C	ENST00000425967	NM_001174067.1	87	Cgc/Tgc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38287433	38287433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	486	329	0	ENST00000425967.3:c.224C>T	p.Ser75Phe	p.S75F	ENST00000425967	NM_001174067.1	75	tCc/tTc																																																																															
LYN	4067	MSKCC	GRCh37	8	56863253	56863253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	773	461	0	ENST00000519728.1:c.397G>T	p.Asp133Tyr	p.D133Y	ENST00000519728	NM_002350.3	133	Gat/Tat																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0017067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	20	421	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
AR	367	MSKCC	GRCh37	X	66937337	66937337	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137852571		P-0017067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	25	173	0	ENST00000374690.3:c.2191G>A	p.Val731Met	p.V731M	ENST00000374690	NM_000044.3	731	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	640	686	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133237617	133237617	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	432	697	2	ENST00000320574.5:c.2998del	p.Glu1000LysfsTer7	p.E1000Kfs*7	ENST00000320574	NM_006231.2	1000	Gaa/aa																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134859	41134859	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	221	399	0	ENST00000379561.5:c.769A>G	p.Met257Val	p.M257V	ENST00000379561	NM_002015.3	257	Atg/Gtg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061725	38061726	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs766493600		P-0017224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	126	344	0	ENST00000250448.2:c.263dup	p.Ser89LeufsTer138	p.S89Lfs*138	ENST00000250448	NM_004496.3	88	ggc/ggGc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59885992	59885992	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	269	584	0	ENST00000259008.2:c.754A>T	p.Thr252Ser	p.T252S	ENST00000259008	NM_032043.2	252	Aca/Tca																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913315		P-0017224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	426	740	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610123	10610123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	469	745	0	ENST00000171111.5:c.587G>T	p.Cys196Phe	p.C196F	ENST00000171111	NM_203500.1	196	tGt/tTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610208	10610208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	511	734	0	ENST00000171111.5:c.502G>T	p.Val168Phe	p.V168F	ENST00000171111	NM_203500.1	168	Gtc/Ttc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022341	31022341	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1292056366		P-0017224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	196	321	0	ENST00000375687.4:c.1826C>T	p.Thr609Ile	p.T609I	ENST00000375687	NM_015338.5	609	aCt/aTt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356362	66356362	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	303	556	1	ENST00000273854.3:c.1135C>A	p.Pro379Thr	p.P379T	ENST00000273854	NM_004439.5	379	Ccg/Acg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180952	32180952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	312	452	0	ENST00000375023.3:c.2398C>T	p.Pro800Ser	p.P800S	ENST00000375023	NM_004557.3	800	Ccg/Tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0017233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	87	628	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130576	29130576	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs558321010		P-0017233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	34	341	0	ENST00000328354.6:c.134C>T	p.Thr45Met	p.T45M	ENST00000328354	NM_007194.3	45	aCg/aTg																																																																															
SMYD3	64754	MSKCC	GRCh37	1	245912960	245912960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	37	314	0	ENST00000388985.4:c.1192G>T	p.Asp398Tyr	p.D398Y	ENST00000388985		398	Gat/Tat																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3823845	3823845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	74	516	0	ENST00000262367.5:c.2370G>T	p.Gln790His	p.Q790H	ENST00000262367	NM_004380.2	790	caG/caT																																																																															
MET	4233	MSKCC	GRCh37	7	116411880	116411897	+	splice_region_variant,intron_variant	Splice_Region	DEL	TCTTTCTTTCTCTCTGTT	TCTTTCTTTCTCTCTGTT	-			P-0017233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	121	899	0	ENST00000397752.3:c.2888-22_2888-5del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
STAG2	10735	MSKCC	GRCh37	X	123182871	123182871	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	20	277	0	ENST00000218089.9:c.836A>G	p.Asp279Gly	p.D279G	ENST00000218089	NM_001042749.1	279	gAt/gGt																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2489803	2489803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	220	501	2	ENST00000355716.4:c.200G>T	p.Cys67Phe	p.C67F	ENST00000355716	NM_003820.2	67	tGc/tTc																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598357	28598357	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	278	593	0	ENST00000253063.3:c.329C>G	p.Ser110Cys	p.S110C	ENST00000253063	NM_031459.4	110	tCc/tGc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588791	69588791	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0017444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	35	543	0	ENST00000168712.1:c.444+1G>A		p.X148_splice	ENST00000168712	NM_002007.2	148																																																																																
RB1	5925	MSKCC	GRCh37	13	48951156	48951156	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	276	434	1	ENST00000267163.4:c.1318G>T	p.Glu440Ter	p.E440*	ENST00000267163	NM_000321.2	440	Gaa/Taa																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428220	33428220	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0017444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	137	348	0	ENST00000335858.7:c.567G>T	p.Gln189His	p.Q189H	ENST00000335858	NM_133629.2	189	caG/caT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602840	10602840	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	353	789	0	ENST00000171111.5:c.738C>G	p.Phe246Leu	p.F246L	ENST00000171111	NM_203500.1	246	ttC/ttG																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44732851	44732851	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	226	256	0	ENST00000377967.4:c.54C>G	p.Phe18Leu	p.F18L	ENST00000377967	NM_021140.2	18	ttC/ttG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426058	49426058	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs398123712		P-0017444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	278	526	0	ENST00000301067.7:c.12430C>T	p.Gln4144Ter	p.Q4144*	ENST00000301067	NM_003482.3	4144	Cag/Tag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0017459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	168	514	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519991		P-0017459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	198	441	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																															
RET	5979	MSKCC	GRCh37	10	43607568	43607568	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	87	466	1	ENST00000355710.3:c.1544G>T	p.Cys515Phe	p.C515F	ENST00000355710	NM_020975.4	515	tGc/tTc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492938	56492938	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0017459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	72	164	0	ENST00000407977.2:c.1A>T	p.Met1?	p.M1?	ENST00000407977		1	Atg/Ttg																																																																															
SDHA	6389	MSKCC	GRCh37	5	223598	223598	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0017459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	35	211	0	ENST00000264932.6:c.65G>A	p.Trp22Ter	p.W22*	ENST00000264932	NM_004168.2	22	tGg/tAg																																																																															
SDHA	6389	MSKCC	GRCh37	5	223618	223618	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	52	343	0	ENST00000264932.6:c.85G>T	p.Gly29Ter	p.G29*	ENST00000264932	NM_004168.2	29	Gga/Tga																																																																															
SDHA	6389	MSKCC	GRCh37	5	223645	223645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	69	493	0	ENST00000264932.6:c.112G>A	p.Asp38Asn	p.D38N	ENST00000264932	NM_004168.2	38	Gat/Aat																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528133	157528133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	71	404	0	ENST00000346085.5:c.5858G>A	p.Arg1953His	p.R1953H	ENST00000346085	NM_020732.3	1953	cGt/cAt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372203	55372203	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	59	283	0	ENST00000297316.4:c.893G>C	p.Gly298Ala	p.G298A	ENST00000297316	NM_022454.3	298	gGc/gCc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372514	55372514	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768972880		P-0017459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	175	684	1	ENST00000297316.4:c.1204G>A	p.Ala402Thr	p.A402T	ENST00000297316	NM_022454.3	402	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579717	7579717	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs922736614		P-0017491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	478	695	0	ENST00000269305.4:c.79C>T	p.Pro27Ser	p.P27S	ENST00000269305	NM_001126112.2	27	Cct/Tct																																																																															
NF1	4763	MSKCC	GRCh37	17	29550464	29550464	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs915463951		P-0017491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	77	249	0	ENST00000358273.4:c.1724C>T	p.Ser575Leu	p.S575L	ENST00000358273	NM_001042492.2	575	tCa/tTa																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006021	22006021	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747908376		P-0017491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	53	642	0	ENST00000276925.6:c.382G>A	p.Val128Ile	p.V128I	ENST00000276925	NM_004936.3	128	Gtt/Att																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	692	436	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207078	1207078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	837	561	1	ENST00000326873.7:c.166G>T	p.Gly56Trp	p.G56W	ENST00000326873	NM_000455.4	56	Ggg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	1405	563	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
CASP8	841	MSKCC	GRCh37	2	202131457	202131459	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	297	528	0	ENST00000358485.4:c.430_432del	p.Glu144del	p.E144del	ENST00000358485	NM_001080125.1	142	aAGGag/aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257158	16257158	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1141	133	557	1	ENST00000375759.3:c.4423C>T	p.Arg1475Ter	p.R1475*	ENST00000375759	NM_015001.2	1475	Cga/Tga																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640217	3640217	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1687	205	751	0	ENST00000294008.3:c.3422C>G	p.Ser1141Cys	p.S1141C	ENST00000294008	NM_032444.2	1141	tCt/tGt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291061	10291061	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	194	438	0	ENST00000340748.4:c.410C>A	p.Thr137Lys	p.T137K	ENST00000340748		137	aCg/aAg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753309	42753309	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1253	532	753	0	ENST00000222329.4:c.955C>G	p.Gln319Glu	p.Q319E	ENST00000222329	NM_006494.2	319	Caa/Gaa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99136602	99136602	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	79	365	0	ENST00000074304.5:c.91G>C	p.Gly31Arg	p.G31R	ENST00000074304	NM_001134224.1	31	Ggc/Cgc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376082	225376082	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	413	478	0	ENST00000264414.4:c.872del	p.Gly291GlufsTer20	p.G291Efs*20	ENST00000264414	NM_003590.4	291	gGa/ga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40828020	40828020	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	80	262	0	ENST00000373198.4:c.2408C>G	p.Ala803Gly	p.A803G	ENST00000373198	NM_133170.3	803	gCc/gGc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866466	42866466	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1426	183	736	1	ENST00000398585.3:c.166G>T	p.Gly56Ter	p.G56*	ENST00000398585	NM_001135099.1	56	Gga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340390	8340391	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	260	328	0	ENST00000356435.5:c.5205_5206del	p.His1735GlnfsTer13	p.H1735Qfs*13	ENST00000356435		1735	caCAat/caat																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0017509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	918	676	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599221	28599221	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	119	553	1	ENST00000253063.3:c.667G>T	p.Asp223Tyr	p.D223Y	ENST00000253063	NM_031459.4	223	Gat/Tat																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932224	36932224	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	133	413	0	ENST00000361632.4:c.2245C>T	p.Gln749Ter	p.Q749*	ENST00000361632		749	Cag/Tag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30132933	30132933	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs201537930		P-0017509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	75	426	0	ENST00000331968.5:c.668C>A	p.Ser223Tyr	p.S223Y	ENST00000331968	NM_002742.2	223	tCt/tAt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687148	37687172	+	frameshift_variant	Frame_Shift_Del	DEL	TTGACACTGATGAACGAAACTCTGG	TTGACACTGATGAACGAAACTCTGG	-			P-0017509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	63	441	0	ENST00000447079.4:c.4053_4077del	p.Asp1352GlnfsTer3	p.D1352Qfs*3	ENST00000447079	NM_015083.1	1351	aTTGACACTGATGAACGAAACTCTGGt/at																																																																															
BRCA1	672	MSKCC	GRCh37	17	41226526	41226527	+	stop_gained	Nonsense_Mutation	DNP	AG	AG	TT			P-0017509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	158	405	1	ENST00000357654.3:c.4496_4497delinsAA	p.Ser1499Ter	p.S1499*	ENST00000357654	NM_007294.3	1499	tCT/tAA																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257613	19257613	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	99	599	1	ENST00000162023.5:c.613G>T	p.Glu205Ter	p.E205*	ENST00000162023		205	Gaa/Taa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57478726	57478726	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0017509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	46	256	0	ENST00000371085.3:c.313-1G>C		p.X105_splice	ENST00000371085	NM_000516.4	105																																																																																
NTRK2	4915	MSKCC	GRCh37	9	87636288	87636288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	126	515	2	ENST00000277120.3:c.2453G>T	p.Gly818Val	p.G818V	ENST00000277120		818	gGc/gTc																																																																															
RB1	5925	MSKCC	GRCh37	13	48951052	48951052	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0017551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	61	169	0	ENST00000267163.4:c.1216-2A>G		p.X406_splice	ENST00000267163	NM_000321.2	406																																																																																
MGA	23269	MSKCC	GRCh37	15	42054046	42054046	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0017551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	106	393	0	ENST00000219905.7:c.7508C>A	p.Ser2503Ter	p.S2503*	ENST00000219905	NM_001164273.1	2503	tCa/tAa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836414	89836414	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1196789540		P-0017551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	118	305	0	ENST00000389301.3:c.2335C>G	p.Pro779Ala	p.P779A	ENST00000389301	NM_000135.2	779	Cca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782177		P-0017551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1409	335	743	0	ENST00000269305.4:c.644G>A	p.Ser215Asn	p.S215N	ENST00000269305	NM_001126112.2	215	aGt/aAt																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7983127	7983127	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1145	126	561	0	ENST00000319144.4:c.887C>A	p.Pro296Gln	p.P296Q	ENST00000319144	NM_001139.2	296	cCg/cAg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602443	10602443	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1321752702		P-0017551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	133	592	0	ENST00000171111.5:c.1135G>A	p.Gly379Ser	p.G379S	ENST00000171111	NM_203500.1	379	Ggc/Agc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49927998	49927998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1847	111	895	1	ENST00000296474.3:c.3730C>T	p.His1244Tyr	p.H1244Y	ENST00000296474	NM_002447.2	1244	Cat/Tat																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920499	134920499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1242	214	535	1	ENST00000398015.3:c.2314G>A	p.Asp772Asn	p.D772N	ENST00000398015	NM_004441.4	772	Gac/Aac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280067	66280067	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	155	457	0	ENST00000273854.3:c.1622G>T	p.Arg541Leu	p.R541L	ENST00000273854	NM_004439.5	541	cGa/cTa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44919322	44919322	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	40	302	0	ENST00000377967.4:c.1250C>A	p.Pro417His	p.P417H	ENST00000377967	NM_021140.2	417	cCt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	23	290	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872827	136872827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1591	128	980	3	ENST00000241393.3:c.671C>T	p.Ser224Phe	p.S224F	ENST00000241393	NM_003467.2	224	tCc/tTc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0017656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	118	357	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519989		P-0017656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	25	432	0	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217917	7217917	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0017656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	58	439	0	ENST00000380728.2:c.95-1G>C		p.X32_splice	ENST00000380728		32																																																																																
CDH1	999	MSKCC	GRCh37	16	68842406	68842409	+	protein_altering_variant	In_Frame_Del	DEL	GGGT	GGGT	A			P-0017656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	120	609	0	ENST00000261769.5:c.467_470delinsA	p.Trp156_Val157delinsTyr	p.W156_V157delinsY	ENST00000261769	NM_004360.3	156	tGGGTt/tAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	67	673	0	ENST00000269305.4:c.880del	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	294	Gag/ag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864183	57864183	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	41	413	0	ENST00000228682.2:c.1660A>C	p.Thr554Pro	p.T554P	ENST00000228682	NM_005269.2	554	Act/Cct																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138403501	138403501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	98	479	0	ENST00000289153.2:c.2281C>A	p.Pro761Thr	p.P761T	ENST00000289153	NM_006219.2	761	Ccc/Acc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008291	29008291	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs777429596		P-0017724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	110	490	0	ENST00000282397.4:c.580A>G	p.Ile194Val	p.I194V	ENST00000282397	NM_002019.4	194	Ata/Gta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0017724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	325	743	2	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946224	13946224	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	251	458	0	ENST00000405192.2:c.872G>A	p.Gly291Glu	p.G291E	ENST00000405192	NM_001163147.1	291	gGa/gAa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121086	11121086	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	97	620	0	ENST00000344626.4:c.2153A>G	p.Tyr718Cys	p.Y718C	ENST00000344626	NM_003072.3	718	tAt/tGt																																																																															
STK19	8859	MSKCC	GRCh37	6	31939828	31939828	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	82	847	0	ENST00000375331.2:c.55G>C	p.Ala19Pro	p.A19P	ENST00000375331	NM_004197.1	19	Gca/Cca																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0017827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	267	540	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332868	152332868	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745723014		P-0017827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	378	408	0	ENST00000206249.3:c.1174G>A	p.Val392Ile	p.V392I	ENST00000206249	NM_000125.3	392	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0017827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	447	678	2	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0017827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	232	448	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29553470	29553470	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	147	601	2	ENST00000358273.4:c.2019C>A	p.Cys673Ter	p.C673*	ENST00000358273	NM_001042492.2	673	tgC/tgA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591977	48591977	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0017827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	187	290	0	ENST00000342988.3:c.1139+1G>T		p.X380_splice	ENST00000342988	NM_005359.5	380																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15276650	15276650	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	327	585	0	ENST00000263388.2:c.5615G>C	p.Gly1872Ala	p.G1872A	ENST00000263388	NM_000435.2	1872	gGc/gCc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15378304	15378305	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	321	558	0	ENST00000263377.2:c.481dup	p.Ile161AsnfsTer3	p.I161Nfs*3	ENST00000263377	NM_058243.2	161	ata/aAta																																																																															
XPO1	7514	MSKCC	GRCh37	2	61761029	61761029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	30	292	0	ENST00000401558.2:c.4C>T	p.Pro2Ser	p.P2S	ENST00000401558	NM_003400.3	2	Cca/Tca																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31409192	31409192	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	129	609	0	ENST00000344624.3:c.3825A>T	p.Glu1275Asp	p.E1275D	ENST00000344624		1275	gaA/gaT																																																																															
APC	324	MSKCC	GRCh37	5	112175455	112175456	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0017827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	87	324	2	ENST00000257430.4:c.4164_4165del	p.Ser1389CysfsTer5	p.S1389Cfs*5	ENST00000257430	NM_000038.5	1388	acTTct/acct																																																																															
BTK	695	MSKCC	GRCh37	X	100615635	100615635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	537	633	2	ENST00000308731.7:c.697C>A	p.Leu233Ile	p.L233I	ENST00000308731	NM_000061.2	233	Cta/Ata																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763733111		P-0017831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	148	513	1	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023151	27023179	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	-			P-0017831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	110	75	1	ENST00000324856.7:c.267_295del	p.Ser90ProfsTer11	p.S90Pfs*11	ENST00000324856	NM_006015.4	86	gGCGGAGCCGGCAGCGGCGGCGGGCCCGGC/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7579432	7579433	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	361	584	0	ENST00000269305.4:c.254dup	p.Ala86CysfsTer63	p.A86Cfs*63	ENST00000269305	NM_001126112.2	85	cct/ccCt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631176	69631176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	412	731	1	ENST00000334134.2:c.236C>T	p.Thr79Met	p.T79M	ENST00000334134	NM_005247.2	79	aCg/aTg																																																																															
YES1	7525	MSKCC	GRCh37	18	756806	756806	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760359350		P-0017831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	145	442	0	ENST00000314574.4:c.22G>A	p.Glu8Lys	p.E8K	ENST00000314574	NM_005433.3	8	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175907	112175907	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0017831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	114	414	0	ENST00000257430.4:c.4616C>G	p.Ser1539Ter	p.S1539*	ENST00000257430	NM_000038.5	1539	tCa/tGa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965643	93965643	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762713500		P-0017831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	141	522	1	ENST00000369303.4:c.2285G>A	p.Arg762His	p.R762H	ENST00000369303	NM_004440.3	762	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0017846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	140	359	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0017846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	90	323	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39620705	39620705	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0017846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	30	212	0	ENST00000262039.4:c.2103G>C	p.Gln701His	p.Q701H	ENST00000262039	NM_002647.2	701	caG/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs786201838		P-0017882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	421	849	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341730	8341730	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41281783		P-0017882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	144	890	0	ENST00000356435.5:c.4910C>T	p.Thr1637Met	p.T1637M	ENST00000356435		1637	aCg/aTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953041	2953041	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149857605		P-0017882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	171	817	1	ENST00000396946.4:c.2899C>T	p.Arg967Cys	p.R967C	ENST00000396946	NM_032415.4	967	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	26	475	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1206165503		P-0017899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	229	1179	0	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115263191	115263191	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1306278892		P-0017899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	48	761	2	ENST00000438362.2:c.2159G>A	p.Arg720His	p.R720H	ENST00000438362	NM_001242891.1	720	cGc/cAc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477131	67477131	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	158	745	0	ENST00000327367.4:c.938T>A	p.Ile313Asn	p.I313N	ENST00000327367	NM_005902.3	313	aTt/aAt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0017932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	228	621	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060711	38060711	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0017932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	181	935	0	ENST00000250448.2:c.1278C>G	p.Tyr426Ter	p.Y426*	ENST00000250448	NM_004496.3	426	taC/taG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426268	49426268	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	266	750	0	ENST00000301067.7:c.12220C>A	p.Gln4074Lys	p.Q4074K	ENST00000301067	NM_003482.3	4074	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0018007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	26	984	1	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0018007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	45	573	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579491	7579491	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	157	928	1	ENST00000269305.4:c.196del	p.Met66CysfsTer57	p.M66Cfs*57	ENST00000269305	NM_001126112.2	66	Atg/tg																																																																															
REL	5966	MSKCC	GRCh37	2	61128191	61128191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	116	557	0	ENST00000295025.8:c.367A>G	p.Ile123Val	p.I123V	ENST00000295025	NM_002908.2	123	Ata/Gta																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147552	47147552	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	104	732	1	ENST00000409792.3:c.4774C>G	p.Arg1592Gly	p.R1592G	ENST00000409792	NM_014159.6	1592	Cga/Gga																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971307	13971307	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771410991		P-0018069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	92	557	1	ENST00000405192.2:c.622C>T	p.Arg208Cys	p.R208C	ENST00000405192	NM_001163147.1	208	Cgt/Tgt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061212	38061232	+	inframe_deletion	In_Frame_Del	DEL	GTAGCAGCCGTTCTCGAACAT	GTAGCAGCCGTTCTCGAACAT	-			P-0018086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	203	348	0	ENST00000250448.2:c.757_777del	p.Met253_Tyr259del	p.M253_Y259del	ENST00000250448	NM_004496.3	253	ATGTTCGAGAACGGCTGCTAC/-																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376215	15376215	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	99	311	0	ENST00000263377.2:c.799C>G	p.Pro267Ala	p.P267A	ENST00000263377	NM_058243.2	267	Ccc/Gcc																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47613741	47613741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	250	428	0	ENST00000263735.4:c.934C>T	p.Leu312Phe	p.L312F	ENST00000263735	NM_002354.2	312	Ctc/Ttc																																																																															
KDR	3791	MSKCC	GRCh37	4	55972859	55972859	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	115	430	0	ENST00000263923.4:c.1531A>T	p.Asn511Tyr	p.N511Y	ENST00000263923	NM_002253.2	511	Aac/Tac																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163668	32163668	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	63	244	0	ENST00000375023.3:c.5558A>C	p.His1853Pro	p.H1853P	ENST00000375023	NM_004557.3	1853	cAt/cCt																																																																															
CDK6	1021	MSKCC	GRCh37	7	92247415	92247415	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	193	317	0	ENST00000265734.4:c.805A>G	p.Ile269Val	p.I269V	ENST00000265734	NM_001259.6	269	Atc/Gtc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257731	16257732	+	frameshift_variant	Frame_Shift_Ins	INS	CC	CC	TTTGTTTCTG			P-0018086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	204	450	0	ENST00000375759.3:c.4996_4997delinsTTTGTTTCTG	p.Pro1666PhefsTer6	p.P1666Ffs*6	ENST00000375759	NM_015001.2	1666	CCt/TTTGTTTCTGt																																																																															
RB1	5925	MSKCC	GRCh37	13	48934152	48934152	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	250	422	0	ENST00000267163.4:c.608-1G>A		p.X203_splice	ENST00000267163	NM_000321.2	203																																																																																
TP53	7157	MSKCC	GRCh37	17	7577524	7577524	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	135	756	0	ENST00000269305.4:c.757A>G	p.Thr253Ala	p.T253A	ENST00000269305	NM_001126112.2	253	Acc/Gcc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098966	178098966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	123	509	0	ENST00000397062.3:c.79G>T	p.Asp27Tyr	p.D27Y	ENST00000397062	NM_006164.4	27	Gat/Tat																																																																															
FH	2271	MSKCC	GRCh37	1	241672063	241672063	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	77	497	0	ENST00000366560.3:c.578C>A	p.Thr193Lys	p.T193K	ENST00000366560	NM_000143.3	193	aCa/aAa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288470	15288470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	67	305	0	ENST00000263388.2:c.4269C>A	p.Asp1423Glu	p.D1423E	ENST00000263388	NM_000435.2	1423	gaC/gaA																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560875	9560875	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770875912		P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	136	542	0	ENST00000353224.5:c.907G>A	p.Ala303Thr	p.A303T	ENST00000353224	NM_177990.2	303	Gca/Aca																																																																															
STK19	8859	MSKCC	GRCh37	6	31948511	31948511	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	63	380	0	ENST00000375331.2:c.982C>G	p.Pro328Ala	p.P328A	ENST00000375331	NM_004197.1	328	Cct/Gct																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523536	106523536	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	53	507	0	ENST00000359195.3:c.2690del	p.Gly897AlafsTer11	p.G897Afs*11	ENST00000359195	NM_002649.2	896	gtG/gt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87317149	87317262	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	GTGAGTACTCAGGACCAGGGCACATTATCTCAGAGAATTTTCCTGTTGTCTGCTCTGGTCAGGCAGGCATTCACTGGTTCGTTCTAATGTGCATGAAATTATGTGTTTTCACAG	GTGAGTACTCAGGACCAGGGCACATTATCTCAGAGAATTTTCCTGTTGTCTGCTCTGGTCAGGCAGGCATTCACTGGTTCGTTCTAATGTGCATGAAATTATGTGTTTTCACAG	-			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	87	607	0	ENST00000277120.3:c.287+2_288del		p.X96_splice	ENST00000277120		96																																																																																
NTRK2	4915	MSKCC	GRCh37	9	87338624	87339137	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTAAGGCTTGTGTTTGGCTGTGTCTTAATAGAGAGACAAGAGTGTTTCAGAATGCGAGAATGTATTAAACCTAGTGATGATCATTTGATATTTTATAAGGCTACATATAGAAATTTACAAAGAGTTTTTGATGTACATTCACTTTCTACTTATTCTTAATTAATAAAGACTAATGCAGGCTTGCATTTTAGTTATGCATACCTAAGAGAGCGAGGAGTCTCTATATCCCTAGTGAGCTCTTTGTATCATCCTGAACAAAGCGAGTGACTTTCCCTGTGGTCTTCTCCCTTGGAGGGAATTCAGGGATCAAGTCAACCTCATGCACTTAGCAATTGAAACCTAGAGAAATAGAATAACTTCTGATTTACTTCTTCGCCTGAGCCCAGTTCAGGCAGAGAAGCTTTTCTAATGCTATATATACATATTTTCTCTAGTTAGGGGAAGAAACCCCAAATCTTGTCACTTTGGGATCAATCCTAATCAAGGTTATTTTTGTCTGTTAATTCATTTGTA	GGTAAGGCTTGTGTTTGGCTGTGTCTTAATAGAGAGACAAGAGTGTTTCAGAATGCGAGAATGTATTAAACCTAGTGATGATCATTTGATATTTTATAAGGCTACATATAGAAATTTACAAAGAGTTTTTGATGTACATTCACTTTCTACTTATTCTTAATTAATAAAGACTAATGCAGGCTTGCATTTTAGTTATGCATACCTAAGAGAGCGAGGAGTCTCTATATCCCTAGTGAGCTCTTTGTATCATCCTGAACAAAGCGAGTGACTTTCCCTGTGGTCTTCTCCCTTGGAGGGAATTCAGGGATCAAGTCAACCTCATGCACTTAGCAATTGAAACCTAGAGAAATAGAATAACTTCTGATTTACTTCTTCGCCTGAGCCCAGTTCAGGCAGAGAAGCTTTTCTAATGCTATATATACATATTTTCTCTAGTTAGGGGAAGAAACCCCAAATCTTGTCACTTTGGGATCAATCCTAATCAAGGTTATTTTTGTCTGTTAATTCATTTGTA	-			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	139	589	0	ENST00000277120.3:c.720+1_721-1del		p.X240_splice	ENST00000277120		240																																																																																
NTRK2	4915	MSKCC	GRCh37	9	87366899	87366899	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	67	728	0	ENST00000277120.3:c.1297-2A>C		p.X433_splice	ENST00000277120		433																																																																																
ABL1	25	MSKCC	GRCh37	9	133729537	133729537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1257	75	792	1	ENST00000318560.5:c.166G>T	p.Ala56Ser	p.A56S	ENST00000318560	NM_005157.4	56	Gct/Tct																																																																															
TSC1	7248	MSKCC	GRCh37	9	135798853	135798872	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGAGGACAACGACGTCAG	TGTGAGGACAACGACGTCAG	-			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	83	308	0	ENST00000298552.3:c.371_390del	p.Thr124AsnfsTer23	p.T124Nfs*23	ENST00000298552	NM_001162426.1	124	aCTGACGTCGTTGTCCTCACA/a																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44941947	44941960	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTCTTTTTTAAGT	TCTCTTTTTTAAGT	-			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	47	378	0	ENST00000377967.4:c.3210-10_3213del		p.X1070_splice	ENST00000377967	NM_021140.2	1070																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44942845	44942845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	53	362	0	ENST00000377967.4:c.3425G>T	p.Arg1142Ile	p.R1142I	ENST00000377967	NM_021140.2	1142	aGa/aTa																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650332	48650332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	169	371	1	ENST00000376670.3:c.302C>A	p.Thr101Lys	p.T101K	ENST00000376670	NM_002049.3	101	aCg/aAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410354	63410354	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	124	478	0	ENST00000330258.3:c.2813G>C	p.Gly938Ala	p.G938A	ENST00000330258	NM_152424.3	938	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	262	897	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285243	212285243	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1332523099		P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	92	772	1	ENST00000342788.4:c.3058G>A	p.Glu1020Lys	p.E1020K	ENST00000342788	NM_005235.2	1020	Gag/Aag																																																																															
BLM	641	MSKCC	GRCh37	15	91293295	91293295	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	61	397	0	ENST00000355112.3:c.797G>C	p.Arg266Thr	p.R266T	ENST00000355112	NM_000057.2	266	aGa/aCa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663346	227663346	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1024227751		P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	37	467	0	ENST00000305123.5:c.109G>C	p.Glu37Gln	p.E37Q	ENST00000305123	NM_005544.2	37	Gag/Cag																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46738417	46738417	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	189	790	0	ENST00000371975.4:c.1318G>T	p.Gly440Cys	p.G440C	ENST00000371975	NM_003579.3	440	Ggc/Tgc																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439671	51439671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	74	508	0	ENST00000262662.1:c.236G>T	p.Arg79Ile	p.R79I	ENST00000262662		79	aGa/aTa																																																																															
JUN	3725	MSKCC	GRCh37	1	59248366	59248366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	75	288	0	ENST00000371222.2:c.377C>T	p.Thr126Met	p.T126M	ENST00000371222	NM_002228.3	126	aCg/aTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65349065	65349065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	102	706	0	ENST00000342505.4:c.100C>T	p.Pro34Ser	p.P34S	ENST00000342505	NM_002227.2	34	Cca/Tca																																																																															
DDR2	4921	MSKCC	GRCh37	1	162741901	162741901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	157	575	0	ENST00000367921.3:c.1592G>A	p.Gly531Glu	p.G531E	ENST00000367921	NM_006182.2	531	gGa/gAa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94169032	94169032	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1264567817		P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	175	598	1	ENST00000323929.3:c.1960G>T	p.Asp654Tyr	p.D654Y	ENST00000323929	NM_005591.3	654	Gac/Tac																																																																															
PGR	5241	MSKCC	GRCh37	11	100998841	100998841	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	91	899	0	ENST00000325455.5:c.961C>G	p.Arg321Gly	p.R321G	ENST00000325455	NM_001202474.3	321	Cgg/Ggg																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981889	101981889	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	128	1005	0	ENST00000282441.5:c.310C>G	p.His104Asp	p.H104D	ENST00000282441	NM_001130145.2	104	Cac/Gac																																																																															
ATM	472	MSKCC	GRCh37	11	108196122	108196122	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	155	812	1	ENST00000278616.4:c.6658C>G	p.Gln2220Glu	p.Q2220E	ENST00000278616	NM_000051.3	2220	Cag/Gag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	461416	461416	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1172	124	768	0	ENST00000399788.2:c.1104G>C	p.Glu368Asp	p.E368D	ENST00000399788	NM_001042603.1	368	gaG/gaC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437211	49437211	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	97	767	0	ENST00000301067.7:c.5468G>C	p.Gly1823Ala	p.G1823A	ENST00000301067	NM_003482.3	1823	gGa/gCa																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112910751	112910751	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	109	765	0	ENST00000351677.2:c.760C>G	p.Leu254Val	p.L254V	ENST00000351677	NM_002834.3	254	Cta/Gta																																																																															
FLT3	2322	MSKCC	GRCh37	13	28601288	28601288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	303	840	2	ENST00000241453.7:c.2144C>A	p.Thr715Lys	p.T715K	ENST00000241453	NM_004119.2	715	aCa/aAa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437616	110437616	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	104	883	0	ENST00000375856.3:c.785C>G	p.Ser262Trp	p.S262W	ENST00000375856	NM_003749.2	262	tCg/tGg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472658	88472659	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	66	406	0	ENST00000360948.2:c.1896_1897delinsAT	p.His632_Gly633delinsGlnTrp	p.H632_G633delinsQW	ENST00000360948	NM_001012338.2	632	caTGgg/caATgg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680742	88680742	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	127	848	0	ENST00000360948.2:c.515A>T	p.Gln172Leu	p.Q172L	ENST00000360948	NM_001012338.2	172	cAg/cTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779388	3779388	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	67	658	0	ENST00000262367.5:c.5660C>A	p.Ser1887Ter	p.S1887*	ENST00000262367	NM_004380.2	1887	tCa/tAa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81892769	81892769	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	86	624	0	ENST00000359376.3:c.479+1G>T		p.X160_splice	ENST00000359376	NM_002661.3	160																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81922868	81922868	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	91	515	1	ENST00000359376.3:c.857T>G	p.Phe286Cys	p.F286C	ENST00000359376	NM_002661.3	286	tTt/tGt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81925180	81925180	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs759069790		P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	113	645	0	ENST00000359376.3:c.971C>G	p.Ser324Cys	p.S324C	ENST00000359376	NM_002661.3	324	tCc/tGc																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56787224	56787224	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	151	705	0	ENST00000337432.4:c.710G>T	p.Arg237Leu	p.R237L	ENST00000337432	NM_058216.2	237	cGa/cTa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5240284	5240284	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	178	980	0	ENST00000357368.4:c.1630T>C	p.Ser544Pro	p.S544P	ENST00000357368	NM_002850.3	544	Tcc/Ccc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274221	5274221	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	240	918	0	ENST00000357368.4:c.226C>G	p.Gln76Glu	p.Q76E	ENST00000357368	NM_002850.3	76	Cag/Gag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212164	36212164	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs747737343		P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	60	538	0	ENST00000222270.7:c.1915A>G	p.Thr639Ala	p.T639A	ENST00000222270	NM_014727.1	639	Acc/Gcc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085894	16085894	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	67	722	0	ENST00000281043.3:c.1070G>C	p.Arg357Pro	p.R357P	ENST00000281043	NM_005378.4	357	cGt/cCt																																																																															
ALK	238	MSKCC	GRCh37	2	29448368	29448368	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	176	1021	2	ENST00000389048.3:c.3131T>A	p.Leu1044His	p.L1044H	ENST00000389048	NM_004304.4	1044	cTc/cAc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46609582	46609582	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	107	948	0	ENST00000263734.3:c.2306C>G	p.Pro769Arg	p.P769R	ENST00000263734	NM_001430.4	769	cCc/cGc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99169382	99169382	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	82	573	0	ENST00000074304.5:c.1312G>T	p.Asp438Tyr	p.D438Y	ENST00000074304	NM_001134224.1	438	Gac/Tac																																																																															
ACVR1	90	MSKCC	GRCh37	2	158634777	158634777	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	61	619	0	ENST00000263640.3:c.409C>G	p.Leu137Val	p.L137V	ENST00000263640	NM_001105.4	137	Ctt/Gtt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566848	212566848	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	66	388	0	ENST00000342788.4:c.1333C>A	p.Leu445Ile	p.L445I	ENST00000342788	NM_005235.2	445	Cta/Ata																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212587239	212587239	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	121	587	0	ENST00000342788.4:c.762C>G	p.Asp254Glu	p.D254E	ENST00000342788	NM_005235.2	254	gaC/gaG																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376164	225376164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	124	912	0	ENST00000264414.4:c.790G>T	p.Val264Phe	p.V264F	ENST00000264414	NM_003590.4	264	Gtt/Ttt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225378309	225378309	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	105	695	0	ENST00000264414.4:c.586G>T	p.Glu196Ter	p.E196*	ENST00000264414	NM_003590.4	196	Gaa/Taa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714381	40714383	+	missense_variant	Missense_Mutation	ONP	CAG	CAG	AGT			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	67	625	1	ENST00000373198.4:c.4014_4016delinsACT	p.Cys1339Leu	p.C1339L	ENST00000373198	NM_133170.3	1338	atCTGt/atACTt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306677	41306677	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs724159835		P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	97	684	0	ENST00000373198.4:c.982C>G	p.Arg328Gly	p.R328G	ENST00000373198	NM_133170.3	328	Cgc/Ggc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62319506	62319506	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1641	191	865	2	ENST00000482936.1:c.1610G>T	p.Cys537Phe	p.C537F	ENST00000482936		537	tGc/tTc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436631	52436631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	96	795	0	ENST00000460680.1:c.2043G>A	p.Met681Ile	p.M681I	ENST00000460680	NM_004656.3	681	atG/atA																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498442	89498442	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765969815		P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	113	451	1	ENST00000336596.2:c.2414G>A	p.Ser805Asn	p.S805N	ENST00000336596	NM_005233.5	805	aGc/aAc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200121	128200121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	112	860	0	ENST00000341105.2:c.1184C>G	p.Thr395Ser	p.T395S	ENST00000341105	NM_032638.4	395	aCt/aGt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670399	134670399	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	67	607	0	ENST00000398015.3:c.310G>T	p.Gly104Ter	p.G104*	ENST00000398015	NM_004441.4	104	Gga/Tga																																																																															
KIT	3815	MSKCC	GRCh37	4	55599301	55599301	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	114	720	0	ENST00000288135.5:c.2427T>A	p.Cys809Ter	p.C809*	ENST00000288135	NM_000222.2	809	tgT/tgA																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803432	32803432	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	120	891	0	ENST00000374899.4:c.727G>T	p.Glu243Ter	p.E243*	ENST00000374899	NM_018833.2	243	Gag/Tag																																																																															
PRDM1	639	MSKCC	GRCh37	6	106543594	106543594	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	74	502	0	ENST00000369096.4:c.396G>C	p.Arg132Ser	p.R132S	ENST00000369096	NM_001198.3	132	agG/agC																																																																															
BRAF	673	MSKCC	GRCh37	7	140501294	140501294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	85	658	0	ENST00000288602.6:c.778C>T	p.Arg260Cys	p.R260C	ENST00000288602	NM_004333.4	260	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873944	151873944	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1191272660		P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	72	711	0	ENST00000262189.6:c.8594G>C	p.Gly2865Ala	p.G2865A	ENST00000262189	NM_170606.2	2865	gGa/gCa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285909	38285909	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs775228360		P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	97	695	1	ENST00000425967.3:c.502T>A	p.Ser168Thr	p.S168T	ENST00000425967	NM_001174067.1	168	Tct/Act																																																																															
JAK2	3717	MSKCC	GRCh37	9	5070016	5070016	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	111	712	0	ENST00000381652.3:c.1605G>C	p.Met535Ile	p.M535I	ENST00000381652	NM_004972.3	535	atG/atC																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87563419	87563419	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	205	800	2	ENST00000277120.3:c.1807C>A	p.Arg603Ser	p.R603S	ENST00000277120		603	Cgt/Agt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209669	98209669	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	61	632	0	ENST00000331920.6:c.3869C>A	p.Ser1290Ter	p.S1290*	ENST00000331920	NM_000264.3	1290	tCa/tAa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412996	63412996	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs965178548		P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	127	557	1	ENST00000330258.3:c.171G>T	p.Met57Ile	p.M57I	ENST00000330258	NM_152424.3	57	atG/atT																																																																															
AR	367	MSKCC	GRCh37	X	66942718	66942718	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	108	506	3	ENST00000374690.3:c.2499G>T	p.Met833Ile	p.M833I	ENST00000374690	NM_000044.3	833	atG/atT																																																																															
MTOR	2475	MSKCC	GRCh37	1	11182146	11182146	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	150	788	0	ENST00000361445.4:c.6700T>C	p.Ser2234Pro	p.S2234P	ENST00000361445	NM_004958.3	2234	Tcg/Ccg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572005	64572005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	154	633	0	ENST00000337652.1:c.1649C>T	p.Pro550Leu	p.P550L	ENST00000337652	NM_130803.2	550	cCg/cTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28895692	28895692	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	127	602	0	ENST00000282397.4:c.3082A>G	p.Ile1028Val	p.I1028V	ENST00000282397	NM_002019.4	1028	Att/Gtt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913383		P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	84	478	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	326	1197	1	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526608	106526608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	118	635	0	ENST00000359195.3:c.2901C>A	p.His967Gln	p.H967Q	ENST00000359195	NM_002649.2	967	caC/caA																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46546390	46546390	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	40	717	0	ENST00000262741.5:c.139T>C	p.Ser47Pro	p.S47P	ENST00000262741	NM_003629.3	47	Tca/Cca																																																																															
JAK1	3716	MSKCC	GRCh37	1	65313285	65313285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	44	777	0	ENST00000342505.4:c.1829G>A	p.Gly610Glu	p.G610E	ENST00000342505	NM_002227.2	610	gGa/gAa																																																																															
CCND2	894	MSKCC	GRCh37	12	4409043	4409043	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	97	464	0	ENST00000261254.3:c.738C>A	p.Cys246Ter	p.C246*	ENST00000261254	NM_001759.3	246	tgC/tgA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428394	49428394	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	328	913	1	ENST00000301067.7:c.10411C>T	p.Gln3471Ter	p.Q3471*	ENST00000301067	NM_003482.3	3471	Cag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879854	37879854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	1903	831	0	ENST00000269571.5:c.2149G>A	p.Glu717Lys	p.E717K	ENST00000269571		717	Gag/Aag																																																																															
AXL	558	MSKCC	GRCh37	19	41744021	41744021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	48	936	0	ENST00000301178.4:c.956C>T	p.Ser319Phe	p.S319F	ENST00000301178	NM_021913.4	319	tCc/tTc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45858925	45858925	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G	rs762741848		P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	78	965	0	ENST00000391945.4:c.1541T>C	p.Ile514Thr	p.I514T	ENST00000391945	NM_000400.3	514	aTt/aCt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163814	152163814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	93	579	2	ENST00000206249.3:c.535G>A	p.Ala179Thr	p.A179T	ENST00000206249	NM_000125.3	179	Gcc/Acc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468081	50468081	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	22	405	0	ENST00000331340.3:c.1316G>T	p.Arg439Leu	p.R439L	ENST00000331340	NM_006060.4	439	cGc/cTc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738406	145738406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	62	776	0	ENST00000428558.2:c.2579C>A	p.Pro860Gln	p.P860Q	ENST00000428558	NM_004260.3	860	cCg/cAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76952128	76952128	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	128	413	0	ENST00000373344.5:c.307G>T	p.Val103Leu	p.V103L	ENST00000373344	NM_000489.3	103	Gta/Tta																																																																															
MTOR	2475	MSKCC	GRCh37	1	11175503	11175503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	179	632	0	ENST00000361445.4:c.7039G>A	p.Asp2347Asn	p.D2347N	ENST00000361445	NM_004958.3	2347	Gac/Aac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	139	504	0	ENST00000324856.7:c.5547_5548dup	p.Asp1850GlyfsTer34	p.D1850Gfs*34	ENST00000324856	NM_006015.4	1847	-/GG																																																																															
JUN	3725	MSKCC	GRCh37	1	59248391	59248391	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	103	246	0	ENST00000371222.2:c.352C>A	p.Leu118Met	p.L118M	ENST00000371222	NM_002228.3	118	Ctg/Atg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851324	156851324	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759637817		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	249	776	0	ENST00000524377.1:c.2281C>T	p.Arg761Trp	p.R761W	ENST00000524377	NM_002529.3	761	Cgg/Tgg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720666	89720666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	100	419	0	ENST00000371953.3:c.820del	p.Trp274GlyfsTer2	p.W274Gfs*2	ENST00000371953	NM_000314.4	273	Ttt/tt																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154242	2154242	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1388678905		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	215	735	3	ENST00000434045.2:c.686del	p.Pro229GlnfsTer27	p.P229Qfs*27	ENST00000434045	NM_001127598.1	229	cCa/ca																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	211	645	3	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999713	100999713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	287	957	0	ENST00000325455.5:c.89G>A	p.Arg30His	p.R30H	ENST00000325455	NM_001202474.3	30	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	275	843	7	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	280	859	0	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	331	1014	2	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	267	749	9	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32971082	32971082	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	39	719	0	ENST00000380152.3:c.9549A>G	p.Ile3183Met	p.I3183M	ENST00000380152		3183	atA/atG																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43730569	43730569	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	61	775	0	ENST00000382044.4:c.3144G>T	p.Arg1048Ser	p.R1048S	ENST00000382044	NM_001141980.1	1048	agG/agT																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99452055	99452055	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	188	556	0	ENST00000268035.6:c.1389G>T	p.Glu463Asp	p.E463D	ENST00000268035	NM_000875.3	463	gaG/gaT																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	278	878	2	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396590	396590	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	254	664	1	ENST00000262320.3:c.436C>T	p.Arg146Ter	p.R146*	ENST00000262320	NM_003502.3	146	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274214	10274214	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768469157		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	115	360	1	ENST00000330684.3:c.55C>T	p.Arg19Cys	p.R19C	ENST00000330684	NM_001134407.1	19	Cgc/Tgc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	318	614	0	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	143	536	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979022	7979022	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	286	695	2	ENST00000319144.4:c.1545G>T	p.Glu515Asp	p.E515D	ENST00000319144	NM_001139.2	515	gaG/gaT																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15989613	15989613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	89	282	0	ENST00000268712.3:c.3160G>A	p.Gly1054Arg	p.G1054R	ENST00000268712	NM_006311.3	1054	Gga/Aga																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	137	471	14	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
NF1	4763	MSKCC	GRCh37	17	29663368	29663370	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	160	521	0	ENST00000358273.4:c.6027_6029del	p.Val2010del	p.V2010del	ENST00000358273	NM_001042492.2	2008	gaTGTt/gat																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33430316	33430316	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28363283		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	293	804	1	ENST00000335858.7:c.359G>A	p.Arg120Gln	p.R120Q	ENST00000335858	NM_133629.2	120	cGa/cAa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37873699	37873699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766029214		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	301	796	1	ENST00000269571.5:c.1864G>A	p.Ala622Thr	p.A622T	ENST00000269571		622	Gca/Aca																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244787	41244787	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs80357377		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	262	892	2	ENST00000357654.3:c.2761C>T	p.Gln921Ter	p.Q921*	ENST00000357654	NM_007294.3	921	Cag/Tag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs80357522		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	233	794	2	ENST00000357654.3:c.1961del	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805588	46805588	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201428095		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	325	1002	0	ENST00000290295.7:c.368G>A	p.Arg123His	p.R123H	ENST00000290295	NM_006361.5	123	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	362	555	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39609380	39609380	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1370548557		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	136	526	0	ENST00000262039.4:c.1682G>A	p.Arg561His	p.R561H	ENST00000262039	NM_002647.2	561	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245976	5245976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	249	732	0	ENST00000357368.4:c.799G>A	p.Val267Met	p.V267M	ENST00000357368	NM_002850.3	267	Gtg/Atg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123790	11123790	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	233	596	0	ENST00000344626.4:c.2438+2T>C		p.X813_splice	ENST00000344626	NM_003072.3	813																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11132635	11132635	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	286	851	2	ENST00000344626.4:c.2854del	p.Glu952LysfsTer5	p.E952Kfs*5	ENST00000344626	NM_003072.3	951	Ggg/gg																																																																															
CALR	811	MSKCC	GRCh37	19	13049552	13049552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	248	628	0	ENST00000316448.5:c.59C>T	p.Ala20Val	p.A20V	ENST00000316448	NM_004343.3	20	gCc/gTc																																																																															
AXL	558	MSKCC	GRCh37	19	41737136	41737136	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761251235		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	89	996	6	ENST00000301178.4:c.716C>T	p.Thr239Met	p.T239M	ENST00000301178	NM_021913.4	239	aCg/aTg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39214651	39214651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	176	663	0	ENST00000402219.2:c.3473G>A	p.Arg1158Gln	p.R1158Q	ENST00000402219	NM_005633.3	1158	cGa/cAa																																																																															
BARD1	580	MSKCC	GRCh37	2	215646085	215646085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	197	694	1	ENST00000260947.4:c.513del	p.Asp172MetfsTer40	p.D172Mfs*40	ENST00000260947	NM_000465.2	171	aaA/aa																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24129373	24129373	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	200	409	0	ENST00000263121.7:c.17T>C	p.Leu6Pro	p.L6P	ENST00000263121	NM_003073.3	6	cTg/cCg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091740	29091740	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200649225		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	139	347	0	ENST00000328354.6:c.1217G>A	p.Arg406His	p.R406H	ENST00000328354	NM_007194.3	406	cGt/cAt																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665096	138665096	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758370933		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	24	414	0	ENST00000330315.3:c.469C>T	p.Pro157Ser	p.P157S	ENST00000330315	NM_023067.3	157	Ccc/Tcc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803121	1803121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745863884		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	291	889	1	ENST00000260795.2:c.473G>A	p.Arg158Gln	p.R158Q	ENST00000260795		158	cGg/cAg																																																																															
KIT	3815	MSKCC	GRCh37	4	55597561	55597561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751005114		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	137	588	1	ENST00000288135.5:c.2209G>A	p.Asp737Asn	p.D737N	ENST00000288135	NM_000222.2	737	Gac/Aac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	231	630	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294664	1294665	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1060502990		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	57	331	2	ENST00000310581.5:c.336dup	p.Glu113ArgfsTer79	p.E113Rfs*79	ENST00000310581	NM_198253.2	112	-/C																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589576	67589576	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1289537429		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	100	542	1	ENST00000274335.5:c.1344del	p.Lys448AsnfsTer32	p.K448Nfs*32	ENST00000274335		447	Aaa/aa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	270	865	8	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
NPM1	4869	MSKCC	GRCh37	5	170814986	170814986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	128	363	0	ENST00000296930.5:c.34C>A	p.Leu12Met	p.L12M	ENST00000296930	NM_002520.6	12	Ctg/Atg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047941	180047941	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs184409663		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	303	926	0	ENST00000261937.6:c.2234G>A	p.Arg745His	p.R745H	ENST00000261937	NM_182925.4	745	cGc/cAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057641	180057641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	291	934	0	ENST00000261937.6:c.314A>G	p.Asp105Gly	p.D105G	ENST00000261937	NM_182925.4	105	gAc/gGc																																																																															
FYN	2534	MSKCC	GRCh37	6	112015839	112015839	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1364706330		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	236	667	0	ENST00000368678.4:c.1102G>A	p.Ala368Thr	p.A368T	ENST00000368678		368	Gca/Aca																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	228	716	6	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	152	741	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141559284	141559284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	256	728	1	ENST00000220592.5:c.1517G>A	p.Arg506Gln	p.R506Q	ENST00000220592	NM_012154.3	506	cGg/cAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396277	139396277	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs878855028		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	79	915	3	ENST00000277541.6:c.5561G>A	p.Arg1854His	p.R1854H	ENST00000277541	NM_017617.3	1854	cGc/cAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399278	139399278	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778271353		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	70	852	3	ENST00000277541.6:c.4865G>A	p.Arg1622His	p.R1622H	ENST00000277541	NM_017617.3	1622	cGc/cAc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139818403	139818403	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	63	732	0	ENST00000247668.2:c.1238T>C	p.Val413Ala	p.V413A	ENST00000247668	NM_021138.3	413	gTg/gCg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410472	63410472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	229	610	3	ENST00000330258.3:c.2695G>A	p.Ala899Thr	p.A899T	ENST00000330258	NM_152424.3	899	Gca/Aca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720648	89720649	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TA	TA	-			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	46	463	0	ENST00000371953.3:c.802-3_802-2del		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																																
BRAF	673	MSKCC	GRCh37	7	140477837	140477851	+	inframe_deletion	In_Frame_Del	DEL	TAGGTGCTGTCACAT	TAGGTGCTGTCACAT	-			P-0018378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	69	701	0	ENST00000288602.6:c.1457_1471del	p.Asn486_Pro490del	p.N486_P490del	ENST00000288602	NM_004333.4	486	aATGTGACAGCACCTAca/aca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974696	21974697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	90	498	0	ENST00000304494.5:c.130dup	p.Tyr44LeufsTer76	p.Y44Lfs*76	ENST00000304494	NM_000077.4	44	tac/tTac																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400932	72400932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	47	665	0	ENST00000357731.5:c.239C>T	p.Ala80Val	p.A80V	ENST00000357731	NM_173808.2	80	gCg/gTg																																																																															
JUN	3725	MSKCC	GRCh37	1	59248525	59248525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	49	598	0	ENST00000371222.2:c.218C>A	p.Ser73Ter	p.S73*	ENST00000371222	NM_002228.3	73	tCg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576926	7576927	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GC	GC	AA			P-0018378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	80	573	1	ENST00000269305.4:c.920-1_920delinsTT		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
MEF2B	100271849	MSKCC	GRCh37	19	19256677	19256677	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	72	702	0	ENST00000162023.5:c.1036T>G	p.Ser346Ala	p.S346A	ENST00000162023		346	Tcc/Gcc																																																																															
TERT	7015	MSKCC	GRCh37	5	1293800	1293800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370887827		P-0018378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	102	953	4	ENST00000310581.5:c.1201G>A	p.Ala401Thr	p.A401T	ENST00000310581	NM_198253.2	401	Gcg/Acg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577123	7577123	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs876660333		P-0018416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	494	750	0	ENST00000269305.4:c.815T>A	p.Val272Glu	p.V272E	ENST00000269305	NM_001126112.2	272	gTg/gAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420976	49421030	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAAGGTGCCAAGGGGGAAGGGGGCGGGGAGGGTTCTTCAGGAGGTGGGGCCGA	GAGAAGGTGCCAAGGGGGAAGGGGGCGGGGAGGGTTCTTCAGGAGGTGGGGCCGA	-			P-0018416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	145	364	0	ENST00000301067.7:c.14719_14773del	p.Ser4907LeufsTer70	p.S4907Lfs*70	ENST00000301067	NM_003482.3	4907	TCGGCCCCACCTCCTGAAGAACCCTCCCCGCCCCCTTCCCCCTTGGCACCTTCTCct/ct																																																																															
STK11	6794	MSKCC	GRCh37	19	1219404	1219430	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCCCACGGGTGCGTGCGCGGGGCAGG	GGCCCACGGGTGCGTGCGCGGGGCAGG	-			P-0018416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	143	472	1	ENST00000326873.7:c.460_464+22del		p.X154_splice	ENST00000326873	NM_000455.4	154																																																																																
STK11	6794	MSKCC	GRCh37	19	1220598	1220598	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	210	524	2	ENST00000326873.7:c.616G>T	p.Ala206Ser	p.A206S	ENST00000326873	NM_000455.4	206	Gcg/Tcg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157520000	157520003	+	frameshift_variant	Frame_Shift_Ins	INS	CCGT	CCGT	AGGGCACC			P-0018416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	128	522	0	ENST00000346085.5:c.4069_4072delinsAGGGCACC	p.Pro1357ArgfsTer103	p.P1357Rfs*103	ENST00000346085	NM_020732.3	1357	CCGTat/AGGGCACCat																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939786	71939797	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCCCCGCTGC	AGCCCCCGCTGC	G			P-0018416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	208	735	0	ENST00000298229.2:c.413_424delinsG	p.Lys138SerfsTer23	p.K138Sfs*23	ENST00000298229	NM_001567.3	138	aAGCCCCCGCTGCcc/aGcc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162735807	162735807	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	132	731	0	ENST00000367921.3:c.1116C>G	p.Asn372Lys	p.N372K	ENST00000367921	NM_006182.2	372	aaC/aaG																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138627	11138627	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	86	499	0	ENST00000344626.4:c.3382+1G>A		p.X1128_splice	ENST00000344626	NM_003072.3	1128																																																																																
PDGFRB	5159	MSKCC	GRCh37	5	149497323	149497323	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	216	578	0	ENST00000261799.4:c.2995C>T	p.Arg999Ter	p.R999*	ENST00000261799	NM_002609.3	999	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242486	+	protein_altering_variant	In_Frame_Del	DEL	ATTAAGAGAAGCAACATCT	ATTAAGAGAAGCAACATCT	GCAA			P-0018453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	268	703	2	ENST00000275493.2:c.2238_2256delinsGCAA	p.Leu747_Ser752delinsGln	p.L747_S752delinsQ	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACATCT/gaGCAA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	263	599	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	31	579	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0018490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	85	339	0				ENST00000310581	NM_198253.2																																																																																	
TET2	54790	MSKCC	GRCh37	4	106158296	106158296	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs774246302		P-0018490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	74	375	0	ENST00000380013.4:c.3197C>G	p.Thr1066Ser	p.T1066S	ENST00000380013	NM_001127208.2	1066	aCt/aGt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2963985	2963985	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200736339		P-0018490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	122	434	0	ENST00000396946.4:c.1822C>T	p.Arg608Cys	p.R608C	ENST00000396946	NM_032415.4	608	Cgc/Tgc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879810	37879810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	264	277	0	ENST00000269571.5:c.2105C>T	p.Pro702Leu	p.P702L	ENST00000269571		702	cCt/cTt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118930	115118930	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	256	252	0	ENST00000257566.3:c.411del	p.Val138Ter	p.V138*	ENST00000257566	NM_016569.3	137	aaA/aa																																																																															
MGA	23269	MSKCC	GRCh37	15	42050032	42050032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	213	285	0	ENST00000219905.7:c.7186C>T	p.Arg2396Ter	p.R2396*	ENST00000219905	NM_001164273.1	2396	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591116	67591151	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TTATCCAGCTGAGAAAGACGAGAGACCAATACTTGA	TTATCCAGCTGAGAAAGACGAGAGACCAATACTTGA	-			P-0018536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	143	255	0	ENST00000274335.5:c.1710_1745del	p.Ile571_Met582del	p.I571_M582del	ENST00000274335		570	cTTATCCAGCTGAGAAAGACGAGAGACCAATACTTGAtg/ctg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645923	67645923	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	430	505	0	ENST00000264010.4:c.851A>T	p.His284Leu	p.H284L	ENST00000264010	NM_006565.3	284	cAc/cTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36215583	36215583	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	306	668	0	ENST00000222270.7:c.3380C>G	p.Pro1127Arg	p.P1127R	ENST00000222270	NM_014727.1	1127	cCt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0018577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	86	522	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0018577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	87	573	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500593	99500593	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	113	416	0	ENST00000268035.6:c.4026G>C	p.Glu1342Asp	p.E1342D	ENST00000268035	NM_000875.3	1342	gaG/gaC																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435852	110435853	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCTGGCTGGGC			P-0018588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			682	96	523	0	ENST00000375856.3:c.2538_2548dup	p.Ala850GlyfsTer20	p.A850Gfs*20	ENST00000375856	NM_003749.2	850	gcg/gGCCCAGCCAGGcg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37646930	37646931	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0018588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			782	310	992	0	ENST00000447079.4:c.2055_2056del	p.Pro686ArgfsTer13	p.P686Rfs*13	ENST00000447079	NM_015083.1	684	gaCTct/gact																																																																															
CDK12	51755	MSKCC	GRCh37	17	37676216	37676217	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0018588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			370	421	658	0	ENST00000447079.4:c.2972_2973del	p.Ser991CysfsTer4	p.S991Cfs*4	ENST00000447079	NM_015083.1	991	TCt/t																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3123	118	495	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	508	567	1	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
EP300	2033	MSKCC	GRCh37	22	41545897	41545897	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1215000818		P-0018630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	511	841	2	ENST00000263253.7:c.2512C>T	p.Arg838Cys	p.R838C	ENST00000263253	NM_001429.3	838	Cgt/Tgt																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117695885	117695885	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	227	610	0	ENST00000369458.3:c.552A>C	p.Gln184His	p.Q184H	ENST00000369458	NM_024626.3	184	caA/caC																																																																															
NF1	4763	MSKCC	GRCh37	17	29554615	29554616	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GATG			P-0018630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	784	503	0	ENST00000358273.4:c.2402_2405dup	p.Gln803TrpfsTer5	p.Q803Wfs*5	ENST00000358273	NM_001042492.2	800	-/GATG																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36209117	36209117	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	21	34	0	ENST00000222270.7:c.197C>G	p.Ala66Gly	p.A66G	ENST00000222270	NM_014727.1	66	gCc/gGc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200060	128200060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	100	744	1	ENST00000341105.2:c.1245G>T	p.Glu415Asp	p.E415D	ENST00000341105	NM_032638.4	415	gaG/gaT																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957826	1957826	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767627490		P-0018630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1182	226	583	0	ENST00000382895.3:c.2792C>T	p.Thr931Met	p.T931M	ENST00000382895	NM_133330.2	931	aCg/aTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460411	8460411	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0018630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	165	332	0	ENST00000356435.5:c.3875G>T	p.Arg1292Met	p.R1292M	ENST00000356435		1292	aGg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0018668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	134	643	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523292	176523292	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1172824038		P-0018668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	187	607	0	ENST00000292408.4:c.1949G>A	p.Arg650His	p.R650H	ENST00000292408	NM_213647.1	650	cGc/cAc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618666	37618666	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	366	734	0	ENST00000447079.4:c.343del	p.Gln115SerfsTer9	p.Q115Sfs*9	ENST00000447079	NM_015083.1	114	caC/ca																																																																															
APC	324	MSKCC	GRCh37	5	112102099	112102099	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750503329		P-0018668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	61	309	0	ENST00000257430.4:c.212G>A	p.Arg71His	p.R71H	ENST00000257430	NM_000038.5	71	cGt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440052	49440052	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1176	120	512	0	ENST00000301067.7:c.4574del	p.His1525ProfsTer37	p.H1525Pfs*37	ENST00000301067	NM_003482.3	1525	cAc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0018761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	213	566	1	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18446899	18446899	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	166	426	1	ENST00000266497.5:c.987del	p.Asp331IlefsTer4	p.D331Ifs*4	ENST00000266497		328	ctC/ct																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246158	46246158	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	160	382	0	ENST00000334344.6:c.4252G>T	p.Gly1418Ter	p.G1418*	ENST00000334344	NM_152641.2	1418	Gga/Tga																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279975	18279975	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs751527809		P-0018761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	244	505	0	ENST00000222254.8:c.2058C>G	p.Tyr686Ter	p.Y686*	ENST00000222254	NM_005027.3	686	taC/taG																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944586	40944586	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	169	409	0	ENST00000373198.4:c.1916C>A	p.Ala639Glu	p.A639E	ENST00000373198	NM_133170.3	639	gCa/gAa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803610	1803610	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1457537911		P-0018761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	199	489	0	ENST00000260795.2:c.788A>G	p.Gln263Arg	p.Q263R	ENST00000260795		263	cAg/cGg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876229	35876229	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs766254348		P-0018761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	153	449	0	ENST00000303115.3:c.1021G>T	p.Gly341Ter	p.G341*	ENST00000303115	NM_002185.3	341	Gga/Tga																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271290	26271290	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	158	409	0	ENST00000305910.3:c.323C>A	p.Thr108Asn	p.T108N	ENST00000305910	NM_003534.2	108	aCc/aAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034491	47034491	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0018761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	266	569	0	ENST00000329236.7:c.345G>T	p.Gln115His	p.Q115H	ENST00000329236	NM_001204466.1	115	caG/caT																																																																															
TET1	80312	MSKCC	GRCh37	10	70446412	70446412	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	324	672	0	ENST00000373644.4:c.5352G>C	p.Lys1784Asn	p.K1784N	ENST00000373644	NM_030625.2	1784	aaG/aaC																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	94	317	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81902829	81902829	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	116	569	0	ENST00000359376.3:c.490C>T	p.Arg164Ter	p.R164*	ENST00000359376	NM_002661.3	164	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs985033810		P-0018785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	145	550	1	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29663735	29663745	+	frameshift_variant	Frame_Shift_Del	DEL	ATATTGCTATT	ATATTGCTATT	-			P-0018785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	267	608	0	ENST00000358273.4:c.6230_6240del	p.Asp2077ValfsTer15	p.D2077Vfs*15	ENST00000358273	NM_001042492.2	2077	gATATTGCTATT/g																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	279	679	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0018785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	198	437	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417370	139417370	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs553542677		P-0018785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	168	731	1	ENST00000277541.6:c.674C>T	p.Ser225Leu	p.S225L	ENST00000277541	NM_017617.3	225	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576862	7576862	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	188	710	1	ENST00000269305.4:c.984del	p.Phe328LeufsTer17	p.F328Lfs*17	ENST00000269305	NM_001126112.2	328	ttC/tt																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961459	54961459	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	53	333	0	ENST00000312783.6:c.173C>G	p.Pro58Arg	p.P58R	ENST00000312783	NM_198436.1	58	cCt/cGt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164829	36164829	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	103	904	0	ENST00000300305.3:c.1046A>G	p.Tyr349Cys	p.Y349C	ENST00000300305		349	tAt/tGt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161421	55161421	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	95	556	0	ENST00000257290.5:c.3253del	p.Glu1085LysfsTer40	p.E1085Kfs*40	ENST00000257290	NM_006206.4	1084	gtG/gt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	67	417	8	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0009109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	59	420	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
ATM	472	MSKCC	GRCh37	11	108183157	108183157	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786203765		P-0009109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	45	519	0	ENST00000278616.4:c.5938G>A	p.Gly1980Arg	p.G1980R	ENST00000278616	NM_000051.3	1980	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	249	387	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0009249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	133	502	1	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																															
CASP8	841	MSKCC	GRCh37	2	202131428	202131428	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	116	352	0	ENST00000358485.4:c.396T>G	p.Asp132Glu	p.D132E	ENST00000358485	NM_001080125.1	132	gaT/gaG																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38949871	38949871	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	78	407	0	ENST00000357387.3:c.4079T>G	p.Phe1360Cys	p.F1360C	ENST00000357387	NM_152756.3	1360	tTt/tGt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87482295	87482295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	97	444	0	ENST00000277120.3:c.1582G>A	p.Glu528Lys	p.E528K	ENST00000277120		528	Gaa/Aaa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865725	57865725	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149870317		P-0009249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	176	579	0	ENST00000228682.2:c.3202C>T	p.Arg1068Trp	p.R1068W	ENST00000228682	NM_005269.2	1068	Cgg/Tgg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562321	21562321	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	84	208	0	ENST00000382592.4:c.1598T>C	p.Leu533Pro	p.L533P	ENST00000382592	NM_014572.2	533	cTg/cCg																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961553	54961553	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750077869		P-0009249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1177	73	300	0	ENST00000312783.6:c.79G>A	p.Val27Met	p.V27M	ENST00000312783	NM_198436.1	27	Gtg/Atg																																																																															
ATRX	546	MSKCC	GRCh37	X	76891508	76891508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	109	492	0	ENST00000373344.5:c.4597A>G	p.Ile1533Val	p.I1533V	ENST00000373344	NM_000489.3	1533	Ata/Gta																																																																															
STAG2	10735	MSKCC	GRCh37	X	123190042	123190042	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776480387		P-0009249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	84	450	0	ENST00000218089.9:c.1261C>T	p.His421Tyr	p.H421Y	ENST00000218089	NM_001042749.1	421	Cac/Tac																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396417	396421	+	missense_variant	Missense_Mutation	ONP	CTTAA	CTTAA	ATTTT			P-0009249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	243	435	0	ENST00000262320.3:c.605_609delinsAAAAT	p.Leu202_Lys203delinsGlnAsn	p.L202_K203delinsQN	ENST00000262320	NM_003502.3	202	cTTAAG/cAAAAT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0009260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	259	409	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249028	55249028	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1275022697		P-0009260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	176	381	1	ENST00000275493.2:c.2326C>T	p.Arg776Cys	p.R776C	ENST00000275493	NM_005228.3	776	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380277	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913238		P-0009271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	731	366	1	ENST00000256078.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	61	Caa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100998	27100998	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	336	372	0	ENST00000324856.7:c.4280del	p.Val1427AspfsTer54	p.V1427Dfs*54	ENST00000324856	NM_006015.4	1427	gTa/ga																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902729	50902729	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766784938		P-0009301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	135	619	1	ENST00000440232.2:c.304G>A	p.Asp102Asn	p.D102N	ENST00000440232	NM_002691.3	102	Gac/Aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0009346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1640	337	340	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
RB1	5925	MSKCC	GRCh37	13	48937070	48937093	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GAACATGAATGTAATATAGATGAG	GAACATGAATGTAATATAGATGAG	-			P-0009346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	253	309	0	ENST00000267163.4:c.839_861+1del		p.EHECNIDEdel	ENST00000267163	NM_000321.2	280	GAACATGAATGTAATATAGATGAG/-																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073546	8073547	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	674	597	0	ENST00000377482.5:c.1112dup	p.Ser372IlefsTer4	p.S372Ifs*4	ENST00000377482	NM_018948.3	371	gga/ggGa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36421257	36421257	+	5_prime_UTR_variant	5'UTR	DEL	T	T	-			P-0009346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	143	112	0	ENST00000300305.3:c.-61del		p.*21*	ENST00000300305																																																																																		
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	TCC			P-0009346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	734	307	0	ENST00000275493.2:c.2237_2251delinsTCC	p.Glu746_Thr751delinsValPro	p.E746_T751delinsVP	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gTCCca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121909224		P-0009431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	278	211	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0009431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	429	597	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	81	230	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0009431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	164	364	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	421	581	1	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913476		P-0009431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	392	439	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822585	72822586	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs764626362		P-0009431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	107	358	0	ENST00000268489.5:c.9589dup	p.Gln3197ProfsTer42	p.Q3197Pfs*42	ENST00000268489	NM_006885.3	3197	cag/cCag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850704	63850705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	338	418	0	ENST00000279873.7:c.1489dup	p.Ile497AsnfsTer31	p.I497Nfs*31	ENST00000279873	NM_032199.2	494	-/A																																																																															
MGA	23269	MSKCC	GRCh37	15	42052636	42052636	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1054243525		P-0009431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	466	546	0	ENST00000219905.7:c.7307G>A	p.Arg2436His	p.R2436H	ENST00000219905	NM_001164273.1	2436	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	349	301	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827599	72827599	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	56	576	0	ENST00000268489.5:c.8982C>G	p.Phe2994Leu	p.F2994L	ENST00000268489	NM_006885.3	2994	ttC/ttG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577111	7577111	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs786202082		P-0009434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	149	452	0	ENST00000269305.4:c.827C>G	p.Ala276Gly	p.A276G	ENST00000269305	NM_001126112.2	276	gCc/gGc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5256125	5256125	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	35	333	0	ENST00000357368.4:c.712C>T	p.Arg238Ter	p.R238*	ENST00000357368	NM_002850.3	238	Cga/Tga																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986560	36986585	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGGATACCTGGCCCTGCAGCGCC	GGCTGGATACCTGGCCCTGCAGCGCC	-			P-0009434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	18	303	0	ENST00000354822.5:c.1104_1129del	p.Ala369ValfsTer61	p.A369Vfs*61	ENST00000354822	NM_001079668.2	368	gcGGCGCTGCAGGGCCAGGTATCCAGCCtg/gctg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118360516	118360516	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	291	469	0	ENST00000534358.1:c.4489G>T	p.Glu1497Ter	p.E1497*	ENST00000534358	NM_005933.3	1497	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	176	431	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610427	10610427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	158	441	0	ENST00000171111.5:c.283G>A	p.Ala95Thr	p.A95T	ENST00000171111	NM_203500.1	95	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112179437	112179437	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587778044		P-0009590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	276	679	0	ENST00000257430.4:c.8146G>T	p.Val2716Leu	p.V2716L	ENST00000257430	NM_000038.5	2716	Gtg/Ttg																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125514425	125514425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	158	470	1	ENST00000428830.2:c.1120G>T	p.Val374Phe	p.V374F	ENST00000428830	NM_001114121.2	374	Gtc/Ttc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28885775	28885775	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	168	563	0	ENST00000282397.4:c.3587A>G	p.Glu1196Gly	p.E1196G	ENST00000282397	NM_002019.4	1196	gAa/gGa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226101	2226101	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	211	511	0	ENST00000326181.6:c.1798G>T	p.Gly600Cys	p.G600C	ENST00000326181	NM_032271.2	600	Ggc/Tgc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039648	47039648	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	180	566	0	ENST00000329236.7:c.866A>C	p.His289Pro	p.H289P	ENST00000329236	NM_001204466.1	289	cAc/cCc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123664	46123664	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	176	454	1	ENST00000334344.6:c.47del	p.Gly16AspfsTer42	p.G16Dfs*42	ENST00000334344	NM_152641.2	15	aaG/aa																																																																															
STK11	6794	MSKCC	GRCh37	19	1221222	1221226	+	frameshift_variant	Frame_Shift_Del	DEL	ACCAC	ACCAC	G			P-0009590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	206	668	0	ENST00000326873.7:c.745_749delinsG	p.Thr249GlyfsTer37	p.T249Gfs*37	ENST00000326873	NM_000455.4	249	ACCACg/Gg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779105	3779105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	95	489	0	ENST00000262367.5:c.5943G>A	p.Met1981Ile	p.M1981I	ENST00000262367	NM_004380.2	1981	atG/atA																																																																															
CDK12	51755	MSKCC	GRCh37	17	37646852	37646852	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	328	903	0	ENST00000447079.4:c.1975del	p.Glu659AsnfsTer94	p.E659Nfs*94	ENST00000447079	NM_015083.1	658	aaG/aa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618700	37618701	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	155	866	0	ENST00000447079.4:c.376_377insT	p.Lys126IlefsTer31	p.K126Ifs*31	ENST00000447079	NM_015083.1	126	aaa/aTaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061202	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGCGCTTCTG	GAAGCGCTTCTG	AA			P-0009699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	77	262	0	ENST00000250448.2:c.787_798delinsTT	p.Gln263LeufsTer55	p.Q263Lfs*55	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTC/TT																																																																															
NF1	4763	MSKCC	GRCh37	17	29559089	29559089	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs1131691089		P-0009702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	56	70	0	ENST00000358273.4:c.3198-2A>G		p.X1066_splice	ENST00000358273	NM_001042492.2	1066																																																																																
AKT3	10000	MSKCC	GRCh37	1	243858938	243858938	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1039	83	650	0	ENST00000263826.5:c.127C>T	p.Gln43Ter	p.Q43*	ENST00000263826	NM_005465.4	43	Caa/Taa																																																																															
AKT2	208	MSKCC	GRCh37	19	40740972	40740972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	112	669	0	ENST00000392038.2:c.1346C>T	p.Thr449Ile	p.T449I	ENST00000392038	NM_001626.4	449	aCa/aTa																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656829	45656829	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	71	438	0	ENST00000407780.3:c.327G>C	p.Gln109His	p.Q109H	ENST00000407780	NM_001283052.1	109	caG/caC																																																																															
NF2	4771	MSKCC	GRCh37	22	30074313	30074313	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0009702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	55	295	0	ENST00000338641.4:c.1574+1G>A		p.X525_splice	ENST00000338641	NM_000268.3	525																																																																																
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0009703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	142	555	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs770248150		P-0009703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	480	493	1	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109889	115109889	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	44	124	0	ENST00000257566.3:c.1989G>T	p.Met663Ile	p.M663I	ENST00000257566	NM_016569.3	663	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519980		P-0009759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	54	655	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118347578	118347578	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1085307947		P-0009786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	49	542	0	ENST00000534358.1:c.3215G>T	p.Cys1072Phe	p.C1072F	ENST00000534358	NM_005933.3	1072	tGc/tTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432041	49432041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	75	661	0	ENST00000301067.7:c.9098C>T	p.Thr3033Ile	p.T3033I	ENST00000301067	NM_003482.3	3033	aCc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs483352695		P-0010071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	117	680	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478922	56478922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	186	1022	0	ENST00000267101.3:c.378C>A	p.Asn126Lys	p.N126K	ENST00000267101	NM_001982.3	126	aaC/aaA																																																																															
STAG2	10735	MSKCC	GRCh37	X	123164869	123164869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	215	591	1	ENST00000218089.9:c.182G>A	p.Gly61Glu	p.G61E	ENST00000218089	NM_001042749.1	61	gGa/gAa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577329	64577330	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs386134253		P-0010084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			42	55	532	1	ENST00000337652.1:c.252dup	p.Ile85TyrfsTer32	p.I85Yfs*32	ENST00000337652	NM_130803.2	84	-/T																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540935	187540935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	12	255	0	ENST00000441802.2:c.6805G>A	p.Val2269Met	p.V2269M	ENST00000441802	NM_005245.3	2269	Gtg/Atg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879277	151879277	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs956673837		P-0010084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			32	36	383	0	ENST00000262189.6:c.5668C>T	p.Arg1890Ter	p.R1890*	ENST00000262189	NM_170606.2	1890	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094426	27094427	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	73	352	0	ENST00000324856.7:c.3135dup	p.Arg1046Ter	p.R1046*	ENST00000324856	NM_006015.4	1045	ggt/ggTt																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732413	74732413	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1456	557	873	2	ENST00000359995.5:c.496G>T	p.Ala166Ser	p.A166S	ENST00000359995	NM_001195427.1	166	Gca/Tca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101273	27101273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	328	549	1	ENST00000324856.7:c.4555C>T	p.Gln1519Ter	p.Q1519*	ENST00000324856	NM_006015.4	1519	Cag/Tag																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78425921	78425921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	254	431	0	ENST00000370768.2:c.1524G>T	p.Gln508His	p.Q508H	ENST00000370768	NM_003902.3	508	caG/caT																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082605	16082605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	38	147	0	ENST00000281043.3:c.419C>T	p.Pro140Leu	p.P140L	ENST00000281043	NM_005378.4	140	cCg/cTg																																																																															
ALK	238	MSKCC	GRCh37	2	29430086	29430086	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	698	589	1	ENST00000389048.3:c.3889C>A	p.Pro1297Thr	p.P1297T	ENST00000389048	NM_004304.4	1297	Ccc/Acc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158622675	158622675	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1455	270	962	0	ENST00000263640.3:c.824C>A	p.Ser275Tyr	p.S275Y	ENST00000263640	NM_001105.4	275	tCc/tAc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138452236	138452236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	502	622	1	ENST00000289153.2:c.1017G>T	p.Lys339Asn	p.K339N	ENST00000289153	NM_006219.2	339	aaG/aaT																																																																															
ATR	545	MSKCC	GRCh37	3	142241674	142241674	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	342	415	0	ENST00000350721.4:c.4162G>T	p.Glu1388Ter	p.E1388*	ENST00000350721	NM_001184.3	1388	Gaa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332473	153332473	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	409	626	0	ENST00000281708.4:c.483C>G	p.Phe161Leu	p.F161L	ENST00000281708	NM_033632.3	161	ttC/ttG																																																																															
APC	324	MSKCC	GRCh37	5	112176692	112176692	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	405	571	0	ENST00000257430.4:c.5401G>T	p.Ala1801Ser	p.A1801S	ENST00000257430	NM_000038.5	1801	Gct/Tct																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169961	32169961	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	413	652	0	ENST00000375023.3:c.3647C>A	p.Ser1216Tyr	p.S1216Y	ENST00000375023	NM_004557.3	1216	tCc/tAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527658	157527658	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	242	394	0	ENST00000346085.5:c.5383A>T	p.Asn1795Tyr	p.N1795Y	ENST00000346085	NM_020732.3	1795	Aac/Tac																																																																															
HGF	3082	MSKCC	GRCh37	7	81392117	81392117	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1600	742	842	0	ENST00000222390.5:c.160G>T	p.Asp54Tyr	p.D54Y	ENST00000222390	NM_000601.4	54	Gat/Tat																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509120	106509120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	298	501	0	ENST00000359195.3:c.1114G>T	p.Val372Phe	p.V372F	ENST00000359195	NM_002649.2	372	Gtc/Ttc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5089846	5089846	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	304	537	0	ENST00000381652.3:c.2744G>T	p.Gly915Val	p.G915V	ENST00000381652	NM_004972.3	915	gGa/gTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8331652	8331652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	246	760	1	ENST00000356435.5:c.5464G>T	p.Asp1822Tyr	p.D1822Y	ENST00000356435		1822	Gac/Tac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8733781	8733781	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	182	592	0	ENST00000356435.5:c.63G>T	p.Glu21Asp	p.E21D	ENST00000356435		21	gaG/gaT																																																																															
CBL	867	MSKCC	GRCh37	11	119169081	119169081	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	304	444	2	ENST00000264033.4:c.2265G>T	p.Leu755Phe	p.L755F	ENST00000264033	NM_005188.3	755	ttG/ttT																																																																															
CDK8	1024	MSKCC	GRCh37	13	26911723	26911723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	397	598	2	ENST00000381527.3:c.148G>T	p.Ala50Ser	p.A50S	ENST00000381527	NM_001260.1	50	Gct/Tct																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476299	88476299	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	299	567	0	ENST00000360948.2:c.1833C>A	p.Asp611Glu	p.D611E	ENST00000360948	NM_001012338.2	611	gaC/gaA																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576183	88576183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	358	390	1	ENST00000360948.2:c.1490G>T	p.Gly497Val	p.G497V	ENST00000360948	NM_001012338.2	497	gGg/gTg																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33433445	33433445	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs777593941		P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	285	481	0	ENST00000335858.7:c.200T>C	p.Leu67Pro	p.L67P	ENST00000335858	NM_133629.2	67	cTg/cCg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554428	63554428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	389	496	0	ENST00000307078.5:c.311G>T	p.Cys104Phe	p.C104F	ENST00000307078	NM_004655.3	104	tGc/tTc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375182	31375182	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	75	539	0	ENST00000328111.2:c.579G>C	p.Gln193His	p.Q193H	ENST00000328111	NM_006892.3	193	caG/caC																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044926	47044926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	471	295	0	ENST00000329236.7:c.2018A>G	p.Glu673Gly	p.E673G	ENST00000329236	NM_001204466.1	673	gAg/gGg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25457232	25457232	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	393	442	0	ENST00000264709.3:c.2655G>T	p.Arg885Ser	p.R885S	ENST00000264709	NM_175629.2	885	agG/agT																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097830	8097830	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1425866094		P-0010126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1745	132	771	0	ENST00000346208.3:c.212C>T	p.Thr71Met	p.T71M	ENST00000346208		71	aCg/aTg																																																																															
ATM	472	MSKCC	GRCh37	11	108098551	108098551	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0010126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	153	368	0	ENST00000278616.4:c.121A>T	p.Lys41Ter	p.K41*	ENST00000278616	NM_000051.3	41	Aaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108206609	108206609	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	204	716	0	ENST00000278616.4:c.8189A>T	p.Gln2730Leu	p.Q2730L	ENST00000278616	NM_000051.3	2730	cAg/cTg																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125503145	125503145	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1234061120		P-0010126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	115	707	0	ENST00000428830.2:c.512T>C	p.Leu171Ser	p.L171S	ENST00000428830	NM_001114121.2	171	tTa/tCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	335	517	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514940	103514940	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	117	439	0	ENST00000355739.4:c.1441G>T	p.Val481Leu	p.V481L	ENST00000355739	NM_000123.3	481	Gtg/Ttg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81606188	81606188	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	105	629	0	ENST00000298171.2:c.858T>G	p.Phe286Leu	p.F286L	ENST00000298171	NM_000369.2	286	ttT/ttG																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038895	47038895	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0010126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	134	162	0	ENST00000329236.7:c.670+1G>C		p.X224_splice	ENST00000329236	NM_001204466.1	224																																																																																
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G	rs587782272		P-0010171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	265	367	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
AR	367	MSKCC	GRCh37	X	66766357	66766395	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	-	rs749465311		P-0010171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	48	58	1	ENST00000374690.3:c.1382_1420del	p.Gly461_Gly473del	p.G461_G473del	ENST00000374690	NM_000044.3	457	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC/-																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120484319	120484319	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	131	453	2	ENST00000256646.2:c.2811C>A	p.Cys937Ter	p.C937*	ENST00000256646	NM_024408.3	937	tgC/tgA																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839897	27839897	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1458	202	890	0	ENST00000328488.2:c.197T>G	p.Leu66Arg	p.L66R	ENST00000328488	NM_003533.2	66	cTa/cGa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138145	64138145	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757839757		P-0010171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	108	324	0	ENST00000334205.4:c.2068G>A	p.Val690Met	p.V690M	ENST00000334205	NM_003942.2	690	Gtg/Atg																																																																															
ATM	472	MSKCC	GRCh37	11	108172462	108172462	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1060501556		P-0010171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1451	166	498	0	ENST00000278616.4:c.5265G>T	p.Met1755Ile	p.M1755I	ENST00000278616	NM_000051.3	1755	atG/atT																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805618	46805618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1239	206	685	2	ENST00000290295.7:c.338C>A	p.Thr113Asn	p.T113N	ENST00000290295	NM_006361.5	113	aCt/aAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717640	89717642	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0010171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	309	398	3	ENST00000371953.3:c.665_667del	p.Val222_Lys223delinsGlu	p.V222_K223delinsE	ENST00000371953	NM_000314.4	222	gTGAag/gag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717647	89717656	+	frameshift_variant	Frame_Shift_Del	DEL	ATATTCCTCC	ATATTCCTCC	-			P-0010171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	312	413	3	ENST00000371953.3:c.673_682del	p.Tyr225IlefsTer28	p.Y225Ifs*28	ENST00000371953	NM_000314.4	224	atATATTCCTCC/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0010172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	97	270	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72831953	72831953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1510	161	798	2	ENST00000268489.5:c.4628G>A	p.Arg1543His	p.R1543H	ENST00000268489	NM_006885.3	1543	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023895	27023895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	24	95	0	ENST00000324856.7:c.1001C>T	p.Ser334Leu	p.S334L	ENST00000324856	NM_006015.4	334	tCg/tTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147549	47147549	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	135	417	1	ENST00000409792.3:c.4777G>T	p.Val1593Leu	p.V1593L	ENST00000409792	NM_014159.6	1593	Gtg/Ttg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11169554	11169554	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	343	424	0	ENST00000344626.4:c.4624G>T	p.Glu1542Ter	p.E1542*	ENST00000344626	NM_003072.3	1542	Gag/Tag																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1331503	1331503	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	77	454	0	ENST00000381566.1:c.25G>T	p.Gly9Ter	p.G9*	ENST00000381566		9	Gga/Tga																																																																															
STAG2	10735	MSKCC	GRCh37	X	123200098	123200098	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	91	644	0	ENST00000218089.9:c.2170G>C	p.Asp724His	p.D724H	ENST00000218089	NM_001042749.1	724	Gac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0010202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	72	231	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495741	72495741	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	166	461	0	ENST00000477973.2:c.329G>T	p.Glu111Ter	p.E111*	ENST00000477973	NM_012234.5	111	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1434	483	1072	3	ENST00000263967.3:c.316G>T	p.Gly106Cys	p.G106C	ENST00000263967	NM_006218.2	106	Ggc/Tgc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191035	185191035	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	241	466	0	ENST00000265026.3:c.1916A>C	p.Gln639Pro	p.Q639P	ENST00000265026	NM_004721.4	639	cAg/cCg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187989	32187989	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	195	495	0	ENST00000375023.3:c.1232C>G	p.Pro411Arg	p.P411R	ENST00000375023	NM_004557.3	411	cCc/cGc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066608	94066608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	322	987	0	ENST00000369303.4:c.1151G>T	p.Ser384Ile	p.S384I	ENST00000369303	NM_004440.3	384	aGt/aTt																																																																															
EED	8726	MSKCC	GRCh37	11	85988048	85988048	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	167	418	0	ENST00000263360.6:c.993G>A	p.Trp331Ter	p.W331*	ENST00000263360	NM_003797.3	331	tgG/tgA																																																																															
FANCA	2175	MSKCC	GRCh37	16	89816138	89816138	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0010202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	99	501	0	ENST00000389301.3:c.3239G>T	p.Arg1080Leu	p.R1080L	ENST00000389301	NM_000135.2	1080	cGg/cTg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39550394	39550394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	114	380	1	ENST00000262039.4:c.505G>A	p.Glu169Lys	p.E169K	ENST00000262039	NM_002647.2	169	Gaa/Aaa																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313152	30313152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1511	260	971	1	ENST00000262643.3:c.846G>T	p.Leu282Phe	p.L282F	ENST00000262643	NM_001238.2	282	ttG/ttT																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73775252	73775252	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	172	738	0	ENST00000254810.4:c.4del	p.Ala2ProfsTer35	p.A2Pfs*35	ENST00000254810	NM_005324.3	2	Gcc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0010252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	334	399	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89457216	89457216	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0010252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	231	323	0	ENST00000336596.2:c.1698-1G>C		p.X566_splice	ENST00000336596	NM_005233.5	566																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118366981	118366981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	434	562	0	ENST00000534358.1:c.5563G>C	p.Asp1855His	p.D1855H	ENST00000534358	NM_005933.3	1855	Gat/Cat																																																																															
CDK12	51755	MSKCC	GRCh37	17	37676310	37676310	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	67	566	0	ENST00000447079.4:c.3065A>C	p.Asp1022Ala	p.D1022A	ENST00000447079	NM_015083.1	1022	gAt/gCt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18272118	18272118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			21	16	22	0	ENST00000222254.8:c.628G>A	p.Glu210Lys	p.E210K	ENST00000222254	NM_005027.3	210	Gag/Aag																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792642	33792642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	39	76	0	ENST00000498907.2:c.679C>T	p.Pro227Ser	p.P227S	ENST00000498907	NM_004364.3	227	Ccg/Tcg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560851	9560851	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1320	356	661	0	ENST00000353224.5:c.931C>A	p.His311Asn	p.H311N	ENST00000353224	NM_177990.2	311	Cac/Aac																																																																															
STK11	6794	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1177782647		P-0010403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			510	31	607	0	ENST00000326873.7:c.842dup	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggCc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435300	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-	rs765493638		P-0010403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			158	10	172	1	ENST00000375856.3:c.3099_3101del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1033	ccACCg/ccg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715678	30715678	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886039551		P-0010403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			280	28	354	0	ENST00000359013.4:c.1411G>A	p.Asp471Asn	p.D471N	ENST00000359013	NM_001024847.2	471	Gat/Aat																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100999	41100999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1371429276		P-0010403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			496	36	568	0	ENST00000373198.4:c.1357C>T	p.Arg453Cys	p.R453C	ENST00000373198	NM_133170.3	453	Cgc/Tgc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602374	10602374	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			689	62	816	1	ENST00000171111.5:c.1204C>T	p.Gln402Ter	p.Q402*	ENST00000171111	NM_203500.1	402	Cag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37876056	37876056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			564	39	702	0	ENST00000269571.5:c.1915G>A	p.Asp639Asn	p.D639N	ENST00000269571		639	Gac/Aac																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2193709	2193709	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			566	47	775	0	ENST00000398665.3:c.515A>T	p.Gln172Leu	p.Q172L	ENST00000398665	NM_032482.2	172	cAg/cTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660967	227660967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			485	40	525	0	ENST00000305123.5:c.2488C>T	p.Pro830Ser	p.P830S	ENST00000305123	NM_005544.2	830	Cca/Tca																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662127	227662127	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs745943416		P-0010403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			492	33	543	0	ENST00000305123.5:c.1328G>T	p.Arg443Leu	p.R443L	ENST00000305123	NM_005544.2	443	cGc/cTc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662281	227662281	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1438378264		P-0010403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			532	35	599	0	ENST00000305123.5:c.1174C>G	p.Leu392Val	p.L392V	ENST00000305123	NM_005544.2	392	Ctg/Gtg																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149245626	149245626	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			593	34	671	0	ENST00000360632.3:c.902A>G	p.Asn301Ser	p.N301S	ENST00000360632	NM_015472.4	301	aAt/aGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860756	151860756	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	34	495	0	ENST00000262189.6:c.9906del	p.Thr3303ProfsTer58	p.T3303Pfs*58	ENST00000262189	NM_170606.2	3302	ccC/cc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110251321	110251321	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			388	31	418	0	ENST00000374672.4:c.16G>T	p.Gly6Cys	p.G6C	ENST00000374672	NM_004235.4	6	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	455	315	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871704	35871704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1344	566	1120	0	ENST00000216797.5:c.802C>A	p.Gln268Lys	p.Q268K	ENST00000216797	NM_020529.2	268	Cag/Aag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244138	153244138	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	133	215	0	ENST00000281708.4:c.2019del	p.Trp673CysfsTer34	p.W673Cfs*34	ENST00000281708	NM_033632.3	673	tgG/tg																																																																															
RB1	5925	MSKCC	GRCh37	13	49050840	49050841	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0010463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	150	158	0	ENST00000267163.4:c.2525_2526del	p.Ser842Ter	p.S842*	ENST00000267163	NM_000321.2	842	TCt/t																																																																															
SETD2	29072	MSKCC	GRCh37	3	47143042	47143043	+	stop_gained,splice_region_variant	Nonsense_Mutation	DNP	TC	TC	CT			P-0010463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	152	288	0	ENST00000409792.3:c.4920_4921delinsAG	p.Trp1640_Thr1641delinsTer	p.W1640_T1641delins*	ENST00000409792	NM_014159.6	1640	tgGAct/tgAGct																																																																															
NF1	4763	MSKCC	GRCh37	17	29554545	29554546	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0010463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	95	183	0	ENST00000358273.4:c.2330_2331delinsAT	p.Trp777Tyr	p.W777Y	ENST00000358273	NM_001042492.2	777	tGG/tAT																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798353	45798353	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	156	459	0	ENST00000372115.3:c.541G>T	p.Glu181Ter	p.E181*	ENST00000372115	NM_001048171.1	181	Gag/Tag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470474	25470474	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1024296111		P-0010464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	53	244	0	ENST00000264709.3:c.1000G>A	p.Gly334Ser	p.G334S	ENST00000264709	NM_175629.2	334	Ggc/Agc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187554897	187554897	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0010464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	174	641	0	ENST00000441802.2:c.4264A>T	p.Lys1422Ter	p.K1422*	ENST00000441802	NM_005245.3	1422	Aag/Tag																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518056	176518056	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	131	376	0	ENST00000292408.4:c.554T>G	p.Leu185Arg	p.L185R	ENST00000292408	NM_213647.1	185	cTt/cGt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562895	95562895	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	70	238	0	ENST00000343455.3:c.4362T>G	p.Asp1454Glu	p.D1454E	ENST00000343455	NM_177438.2	1454	gaT/gaG																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52724361	52724361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	86	256	1	ENST00000322088.6:c.1493G>A	p.Arg498His	p.R498H	ENST00000322088	NM_014225.5	498	cGc/cAc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652530	48652530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	54	159	0	ENST00000376670.3:c.1201C>A	p.Pro401Thr	p.P401T	ENST00000376670	NM_002049.3	401	Ccc/Acc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47127802	47127866	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTCTTTCATGGGGGAAGGGAGACACGATGCAGAGCATTGGGAGGCAATATCAGAATATTACAAA	GTTCTTTCATGGGGGAAGGGAGACACGATGCAGAGCATTGGGAGGCAATATCAGAATATTACAAA	-			P-0010464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	36	124	0	ENST00000409792.3:c.5278-62_5280del		p.X1760_splice	ENST00000409792	NM_014159.6	1760																																																																																
BRCA2	675	MSKCC	GRCh37	13	32906837	32906837	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	GCCAGG			P-0010464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	97	458	0	ENST00000380152.3:c.1222delinsGCCAGG	p.Met408AlafsTer24	p.M408Afs*24	ENST00000380152		408	Atg/GCCAGGtg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274911	41274911	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	55	327	0	ENST00000349496.5:c.1161T>G	p.Asn387Lys	p.N387K	ENST00000349496	NM_001904.3	387	aaT/aaG																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098566	11098566	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776534924		P-0010507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	40	251	0	ENST00000344626.4:c.1084G>A	p.Asp362Asn	p.D362N	ENST00000344626	NM_003072.3	362	Gac/Aac																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	190	204	0	ENST00000257430.4:c.4037C>G	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tGa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180051057	180051057	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756924526		P-0010512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	59	285	0	ENST00000261937.6:c.1426C>T	p.Arg476Trp	p.R476W	ENST00000261937	NM_182925.4	476	Cgg/Tgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710652	114710652	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1523	594	748	4	ENST00000543371.1:c.137C>A	p.Ser46Ter	p.S46*	ENST00000543371	NM_001198531.1	46	tCg/tAg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562432	95562432	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	306	337	2	ENST00000343455.3:c.4825A>C	p.Asn1609His	p.N1609H	ENST00000343455	NM_177438.2	1609	Aat/Cat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821644	+	inframe_deletion	In_Frame_Del	DEL	GCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCCGCCACTGCCACC	GCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCCGCCACTGCCACC	-			P-0010512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	569	164	1	ENST00000268489.5:c.10531_10581del	p.Gly3511_Gly3527del	p.G3511_G3527del	ENST00000268489	NM_006885.3	3511	GGTGGCAGTGGCGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGC/-																																																																															
APC	324	MSKCC	GRCh37	5	112174134	112174135	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TATG			P-0010512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	223	425	0	ENST00000257430.4:c.2844_2847dup	p.Pro950TyrfsTer14	p.P950Yfs*14	ENST00000257430	NM_000038.5	948	tct/tcTATGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720654	89720654	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	12	77	0	ENST00000371953.3:c.808del	p.Met270CysfsTer6	p.M270Cfs*6	ENST00000371953	NM_000314.4	269	Aaa/aa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549134	21549134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	54	621	1	ENST00000382592.4:c.3142G>T	p.Asp1048Tyr	p.D1048Y	ENST00000382592	NM_014572.2	1048	Gac/Tac																																																																															
CIC	23152	MSKCC	GRCh37	19	42798382	42798382	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	39	487	0	ENST00000575354.2:c.4253C>G	p.Ser1418Cys	p.S1418C	ENST00000575354	NM_015125.3	1418	tCc/tGc																																																																															
RYBP	23429	MSKCC	GRCh37	3	72428531	72428542	+	inframe_deletion	In_Frame_Del	DEL	TGTTGTGCCACT	TGTTGTGCCACT	-			P-0010731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	31	414	0	ENST00000477973.2:c.460_471del	p.Val155_Gln158del	p.V155_Q158del	ENST00000477973	NM_012234.5	154	caAGTGGCACAACAg/cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0010741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	124	371	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56491647	56491647	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	95	427	0	ENST00000267101.3:c.2539C>G	p.Gln847Glu	p.Q847E	ENST00000267101	NM_001982.3	847	Cag/Gag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554428	63554428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	71	385	0	ENST00000307078.5:c.311G>A	p.Cys104Tyr	p.C104Y	ENST00000307078	NM_004655.3	104	tGc/tAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032525	47032525	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0010741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	94	264	0	ENST00000329236.7:c.202-2A>G		p.X68_splice	ENST00000329236	NM_001204466.1	68																																																																																
ATRX	546	MSKCC	GRCh37	X	76891514	76891514	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	44	278	0	ENST00000373344.5:c.4591T>C	p.Cys1531Arg	p.C1531R	ENST00000373344	NM_000489.3	1531	Tgt/Cgt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47127796	47127797	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0010741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	68	230	0	ENST00000409792.3:c.5285_5286del	p.His1762LeufsTer26	p.H1762Lfs*26	ENST00000409792	NM_014159.6	1762	cAC/c																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	298	423	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38318622	38318622	+	start_lost	Translation_Start_Site	SNP	C	C	A			P-0010824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	198	542	0	ENST00000425967.3:c.3G>T	p.Met1?	p.M1?	ENST00000425967	NM_001174067.1	1	atG/atT																																																																															
FANCA	2175	MSKCC	GRCh37	16	89845359	89845359	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	356	595	0	ENST00000389301.3:c.1768C>A	p.Pro590Thr	p.P590T	ENST00000389301	NM_000135.2	590	Cct/Act																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942737	44942737	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	481	681	0	ENST00000377967.4:c.3317T>G	p.Leu1106Arg	p.L1106R	ENST00000377967	NM_021140.2	1106	cTt/cGt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	404892	404893	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0010824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	435	561	0	ENST00000399788.2:c.4301_4302insTT	p.Leu1435CysfsTer16	p.L1435Cfs*16	ENST00000399788	NM_001042603.1	1434	gtg/gtTTg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	404908	404912	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCG	CTTCG	-			P-0010824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	408	549	0	ENST00000399788.2:c.4282_4286del	p.Arg1428PhefsTer13	p.R1428Ffs*13	ENST00000399788	NM_001042603.1	1428	CGAAGt/t																																																																															
KDM5A	5927	MSKCC	GRCh37	12	404900	404902	+	frameshift_variant	Frame_Shift_Del	DEL	GTT	GTT	CA			P-0010824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	427	550	0	ENST00000399788.2:c.4292_4294delinsTG	p.Glu1431ValfsTer19	p.E1431Vfs*19	ENST00000399788	NM_001042603.1	1431	gAACct/gTGct																																																																															
MLH1	4292	MSKCC	GRCh37	3	37090407	37090407	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs63750292		P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	229	512	0	ENST00000231790.2:c.2002G>A	p.Glu668Lys	p.E668K	ENST00000231790	NM_000249.3	668	Gaa/Aaa																																																																															
RHOA	387	MSKCC	GRCh37	3	49400042	49400042	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1120	74	531	0	ENST00000418115.1:c.295T>C	p.Trp99Arg	p.W99R	ENST00000418115	NM_001664.2	99	Tgg/Cgg																																																																															
IRF4	3662	MSKCC	GRCh37	6	405025	405025	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	82	416	0	ENST00000380956.4:c.1107A>C	p.Gln369His	p.Q369H	ENST00000380956	NM_001195286.1	369	caA/caC																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372325	55372325	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762216558		P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	77	248	0	ENST00000297316.4:c.1015G>A	p.Ala339Thr	p.A339T	ENST00000297316	NM_022454.3	339	Gca/Aca																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737838	145737838	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	42	301	0	ENST00000428558.2:c.2992T>C	p.Trp998Arg	p.W998R	ENST00000428558	NM_004260.3	998	Tgg/Cgg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485767	8485767	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	91	403	1	ENST00000356435.5:c.3050A>T	p.Asp1017Val	p.D1017V	ENST00000356435		1017	gAt/gTt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101904894	101904894	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	97	442	0	ENST00000374994.4:c.882A>T	p.Arg294Ser	p.R294S	ENST00000374994	NM_004612.2	294	agA/agT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	376	420	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986895	36986895	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	51	160	0	ENST00000354822.5:c.794G>C	p.Gly265Ala	p.G265A	ENST00000354822	NM_001079668.2	265	gGc/gCc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143985	11143985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	307	295	1	ENST00000344626.4:c.3566G>A	p.Arg1189Gln	p.R1189Q	ENST00000344626	NM_003072.3	1189	cGa/cAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591905	48591931	+	inframe_deletion	In_Frame_Del	DEL	TTCTGGAGGAGATCGCTTTTGTTTGGG	TTCTGGAGGAGATCGCTTTTGTTTGGG	-			P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	151	569	0	ENST00000342988.3:c.1069_1095del	p.Ser357_Gly365del	p.S357_G365del	ENST00000342988	NM_005359.5	356	ccTTCTGGAGGAGATCGCTTTTGTTTGGGt/cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577133	+	frameshift_variant	Frame_Shift_Del	DEL	CGCACCTCAAAGCT	CGCACCTCAAAGCT	-			P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	816	547	0	ENST00000269305.4:c.805_818del	p.Ser269CysfsTer32	p.S269Cfs*32	ENST00000269305	NM_001126112.2	269	AGCTTTGAGGTGCGt/t																																																																															
NF1	4763	MSKCC	GRCh37	17	29528495	29528518	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCACCAATGTAAGTCCAAAAGGT	ATCACCAATGTAAGTCCAAAAGGT	-			P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	148	557	0	ENST00000358273.4:c.1254_1260+17del		p.X418_splice	ENST00000358273	NM_001042492.2	418																																																																																
ESR1	2099	MSKCC	GRCh37	6	152265352	152265352	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142712646		P-0011111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	22	378	0	ENST00000206249.3:c.805C>T	p.Arg269Cys	p.R269C	ENST00000206249	NM_000125.3	269	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0011111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	11	377	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577085	+	missense_variant	Missense_Mutation	ONP	CCTC	CCTC	TCTT			P-0011111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	33	445	1	ENST00000269305.4:c.853_856delinsAAGA	p.Glu285_Glu286delinsLysLys	p.E285_E286delinsKK	ENST00000269305	NM_001126112.2	285	GAGGaa/AAGAaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971088	21971088	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	10	158	0	ENST00000304494.5:c.270C>G	p.Phe90Leu	p.F90L	ENST00000304494	NM_000077.4	90	ttC/ttG																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0011192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	83	395	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	71	280	0	ENST00000397062.3:c.101G>A	p.Arg34Gln	p.R34Q	ENST00000397062	NM_006164.4	34	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs483352695		P-0011192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1130	142	434	0	ENST00000269305.4:c.736A>C	p.Met246Leu	p.M246L	ENST00000269305	NM_001126112.2	246	Atg/Ctg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs121913370		P-0011192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	18	185	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198288672	198288672	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1222778757		P-0011192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	88	459	0	ENST00000335508.6:c.55C>G	p.Gln19Glu	p.Q19E	ENST00000335508	NM_012433.2	19	Caa/Gaa																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073704	8073704	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	46	639	0	ENST00000377482.5:c.955G>C	p.Val319Leu	p.V319L	ENST00000377482	NM_018948.3	319	Gta/Cta																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165789	118165789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	63	222	0	ENST00000369448.3:c.299C>T	p.Pro100Leu	p.P100L	ENST00000369448	NM_017709.3	100	cCa/cTa																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664880	138664880	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757038357		P-0011192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	10	36	0	ENST00000330315.3:c.685G>A	p.Ala229Thr	p.A229T	ENST00000330315	NM_023067.3	229	Gct/Act																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839802	27839802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2161	285	883	0	ENST00000328488.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000328488	NM_003533.2	98	Gag/Aag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017737	31017737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	167	323	0	ENST00000375687.4:c.599G>T	p.Gly200Val	p.G200V	ENST00000375687	NM_015338.5	200	gGc/gTc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1325456	1325456	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	45	383	0	ENST00000381566.1:c.219C>G	p.Asn73Lys	p.N73K	ENST00000381566		73	aaC/aaG																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874958	151874958	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	47	358	0	ENST00000262189.6:c.7580A>G	p.Asn2527Ser	p.N2527S	ENST00000262189	NM_170606.2	2527	aAt/aGt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900635	32900635	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs81002849		P-0011201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			52	447	366	0	ENST00000380152.3:c.517-1G>T		p.X173_splice	ENST00000380152		173																																																																																
TP53	7157	MSKCC	GRCh37	17	7576891	7576891	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0011201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	563	384	1	ENST00000269305.4:c.955A>T	p.Lys319Ter	p.K319*	ENST00000269305	NM_001126112.2	319	Aag/Tag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974779	15974779	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0011201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	215	486	0	ENST00000268712.3:c.4096A>T	p.Lys1366Ter	p.K1366*	ENST00000268712	NM_006311.3	1366	Aaa/Taa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11136183	11136183	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0011201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	599	427	0	ENST00000344626.4:c.3167A>T	p.Glu1056Val	p.E1056V	ENST00000344626	NM_003072.3	1056	gAg/gTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41574192	41574222	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGATGAGCCCCCAGGCTCAGCAGATGAAC	AGGGATGAGCCCCCAGGCTCAGCAGATGAAC	-			P-0011201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1239	89	527	0	ENST00000263253.7:c.6478_6508del	p.Gly2160Ter	p.G2160*	ENST00000263253	NM_001429.3	2159	ggAGGGATGAGCCCCCAGGCTCAGCAGATGAAC/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0011259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	119	686	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
CIC	23152	MSKCC	GRCh37	19	42791719	42791719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	61	500	0	ENST00000575354.2:c.605G>A	p.Arg202Gln	p.R202Q	ENST00000575354	NM_015125.3	202	cGg/cAg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420315	88420315	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773244598		P-0011259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	49	389	1	ENST00000360948.2:c.2371C>T	p.Arg791Trp	p.R791W	ENST00000360948	NM_001012338.2	791	Cgg/Tgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0011259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	188	1024	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																															
APC	324	MSKCC	GRCh37	5	112174835	112174835	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0011259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	93	434	3	ENST00000257430.4:c.3544A>T	p.Lys1182Ter	p.K1182*	ENST00000257430	NM_000038.5	1182	Aaa/Taa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554446	63554446	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	124	533	0	ENST00000307078.5:c.293T>G	p.Phe98Cys	p.F98C	ENST00000307078	NM_004655.3	98	tTc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112175039	112175040	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0011259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	31	380	0	ENST00000257430.4:c.3749_3750del	p.Lys1250SerfsTer5	p.K1250Sfs*5	ENST00000257430	NM_000038.5	1250	AAa/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	651	427	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032181	10032181	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	186	365	0	ENST00000330684.3:c.642G>T	p.Lys214Asn	p.K214N	ENST00000330684	NM_001134407.1	214	aaG/aaT																																																																															
CENPA	1058	MSKCC	GRCh37	2	27015026	27015026	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	470	457	0	ENST00000335756.4:c.128G>T	p.Arg43Leu	p.R43L	ENST00000335756	NM_001809.3	43	cGg/cTg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202786	128202786	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	544	375	1	ENST00000341105.2:c.934G>T	p.Gly312Cys	p.G312C	ENST00000341105	NM_032638.4	312	Ggc/Tgc																																																																															
KDR	3791	MSKCC	GRCh37	4	55980328	55980328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	163	434	1	ENST00000263923.4:c.763G>T	p.Gly255Trp	p.G255W	ENST00000263923	NM_002253.2	255	Ggg/Tgg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118379870	118379870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	388	352	0	ENST00000534358.1:c.10855G>A	p.Glu3619Lys	p.E3619K	ENST00000534358	NM_005933.3	3619	Gaa/Aaa																																																																															
AR	367	MSKCC	GRCh37	X	66766249	66766249	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	78	257	0	ENST00000374690.3:c.1261G>T	p.Gly421Ter	p.G421*	ENST00000374690	NM_000044.3	421	Gga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1219380	1219381	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	289	365	0	ENST00000326873.7:c.432_433insT	p.Glu145Ter	p.E145*	ENST00000326873	NM_000455.4	144	-/T																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602687	10602691	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGC	GCAGC	-			P-0011331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	344	385	2	ENST00000171111.5:c.887_891del	p.Arg296GlnfsTer52	p.R296Qfs*52	ENST00000171111	NM_203500.1	296	cGCTGC/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	324	604	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	286	285	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520017		P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	235	452	2	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094477	27094477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	244	346	0	ENST00000324856.7:c.3185G>A	p.Gly1062Asp	p.G1062D	ENST00000324856	NM_006015.4	1062	gGt/gAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610405	10610405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	309	470	0	ENST00000171111.5:c.305C>T	p.Ser102Leu	p.S102L	ENST00000171111	NM_203500.1	102	tCa/tTa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469564	25469564	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs796065342		P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	428	584	1	ENST00000264709.3:c.1204C>T	p.Gln402Ter	p.Q402*	ENST00000264709	NM_175629.2	402	Cag/Tag																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784139	9784139	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1237870323		P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	178	342	0	ENST00000377346.4:c.2707G>C	p.Glu903Gln	p.E903Q	ENST00000377346	NM_005026.3	903	Gag/Cag																																																																															
RAF1	5894	MSKCC	GRCh37	3	12641758	12641758	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	377	405	0	ENST00000251849.4:c.883A>T	p.Ser295Cys	p.S295C	ENST00000251849	NM_002880.3	295	Agt/Tgt																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749523	41749523	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	305	321	0	ENST00000226382.2:c.272G>T	p.Gly91Val	p.G91V	ENST00000226382	NM_003924.3	91	gGc/gTc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161398	55161398	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs752633017		P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	579	441	0	ENST00000257290.5:c.3229G>T	p.Gly1077Cys	p.G1077C	ENST00000257290	NM_006206.4	1077	Ggc/Tgc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35875614	35875614	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs912324015		P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	273	306	1	ENST00000303115.3:c.801G>T	p.Arg267Ser	p.R267S	ENST00000303115	NM_002185.3	267	agG/agT																																																																															
APC	324	MSKCC	GRCh37	5	112174179	112174179	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	261	465	1	ENST00000257430.4:c.2888G>T	p.Ser963Ile	p.S963I	ENST00000257430	NM_000038.5	963	aGt/aTt																																																																															
CCND3	896	MSKCC	GRCh37	6	41908181	41908181	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1447795219		P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	222	420	0	ENST00000372991.4:c.341G>T	p.Arg114Leu	p.R114L	ENST00000372991	NM_001760.3	114	cGc/cTc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117647390	117647390	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	313	614	0	ENST00000368508.3:c.5554G>T	p.Gly1852Ter	p.G1852*	ENST00000368508	NM_002944.2	1852	Gga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2952936	2952936	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	52	340	0	ENST00000396946.4:c.3004A>C	p.Thr1002Pro	p.T1002P	ENST00000396946	NM_032415.4	1002	Acc/Ccc																																																																															
HGF	3082	MSKCC	GRCh37	7	81340797	81340797	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	203	398	0	ENST00000222390.5:c.1444C>G	p.His482Asp	p.H482D	ENST00000222390	NM_000601.4	482	Cat/Gat																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38273533	38273533	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	332	372	1	ENST00000425967.3:c.1802G>T	p.Arg601Leu	p.R601L	ENST00000425967	NM_001174067.1	601	cGg/cTg																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006209	22006209	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	189	259	0	ENST00000276925.6:c.194T>C	p.Leu65Pro	p.L65P	ENST00000276925	NM_004936.3	65	cTg/cCg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570268	87570268	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	183	320	0	ENST00000277120.3:c.2008C>A	p.Leu670Met	p.L670M	ENST00000277120		670	Ctg/Atg																																																																															
SYK	6850	MSKCC	GRCh37	9	93650135	93650135	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs762706714		P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	432	463	0	ENST00000375746.1:c.1686G>T	p.Met562Ile	p.M562I	ENST00000375746	NM_001174167.1	562	atG/atT																																																																															
TSC1	7248	MSKCC	GRCh37	9	135796793	135796793	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs118203429		P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	310	493	0	ENST00000298552.3:c.694G>T	p.Glu232Ter	p.E232*	ENST00000298552	NM_001162426.1	232	Gaa/Taa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139407900	139407900	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs374434131		P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	190	489	0	ENST00000277541.6:c.2297G>T	p.Gly766Val	p.G766V	ENST00000277541	NM_017617.3	766	gGc/gTc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456455	32456455	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	147	165	0	ENST00000332351.3:c.437G>A	p.Trp146Ter	p.W146*	ENST00000332351	NM_024426.4	146	tGg/tAg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246679	46246679	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	97	136	0	ENST00000334344.6:c.4773G>T	p.Gln1591His	p.Q1591H	ENST00000334344	NM_152641.2	1591	caG/caT																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110056	115110056	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs755321111		P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	84	290	0	ENST00000257566.3:c.1822A>T	p.Met608Leu	p.M608L	ENST00000257566	NM_016569.3	608	Atg/Ttg																																																																															
POLE	5426	MSKCC	GRCh37	12	133226091	133226091	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	286	365	0	ENST00000320574.5:c.3806T>A	p.Leu1269His	p.L1269H	ENST00000320574	NM_006231.2	1269	cTt/cAt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001294	29001294	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	109	425	0	ENST00000282397.4:c.1436+2T>C		p.X479_splice	ENST00000282397	NM_002019.4	479																																																																																
BLM	641	MSKCC	GRCh37	15	91293240	91293240	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs558524280		P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	227	273	0	ENST00000355112.3:c.742A>G	p.Ile248Val	p.I248V	ENST00000355112	NM_000057.2	248	Ata/Gta																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223979	2223979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	411	537	0	ENST00000326181.6:c.1193C>T	p.Pro398Leu	p.P398L	ENST00000326181	NM_032271.2	398	cCt/cTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858436	9858436	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	416	523	0	ENST00000330684.3:c.2965A>T	p.Asn989Tyr	p.N989Y	ENST00000330684	NM_001134407.1	989	Aat/Tat																																																																															
PALB2	79728	MSKCC	GRCh37	16	23640988	23640988	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	175	412	0	ENST00000261584.4:c.2487G>C	p.Gln829His	p.Q829H	ENST00000261584	NM_024675.3	829	caG/caC																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641142	23641142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	465	462	0	ENST00000261584.4:c.2333G>T	p.Ser778Ile	p.S778I	ENST00000261584	NM_024675.3	778	aGt/aTt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974764	15974764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	273	587	0	ENST00000268712.3:c.4111G>T	p.Val1371Phe	p.V1371F	ENST00000268712	NM_006311.3	1371	Gtc/Ttc																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805763	46805763	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	297	594	0	ENST00000290295.7:c.193C>A	p.Pro65Thr	p.P65T	ENST00000290295	NM_006361.5	65	Cca/Aca																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11136131	11136131	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	396	533	0	ENST00000344626.4:c.3115A>T	p.Ile1039Phe	p.I1039F	ENST00000344626	NM_003072.3	1039	Atc/Ttc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257397	19257397	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	283	530	0	ENST00000162023.5:c.736G>C	p.Gly246Arg	p.G246R	ENST00000162023		246	Ggg/Cgg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9547016	9547016	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	78	149	0	ENST00000353224.5:c.1006G>T	p.Ala336Ser	p.A336S	ENST00000353224	NM_177990.2	336	Gca/Tca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944544	40944544	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	346	371	0	ENST00000373198.4:c.1958G>C	p.Arg653Pro	p.R653P	ENST00000373198	NM_133170.3	653	cGg/cCg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101130	41101130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	283	321	1	ENST00000373198.4:c.1226C>A	p.Pro409His	p.P409H	ENST00000373198	NM_133170.3	409	cCc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306605	41306605	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	383	453	0	ENST00000373198.4:c.1054C>G	p.Pro352Ala	p.P352A	ENST00000373198	NM_133170.3	352	Ccc/Gcc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091213	29091213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			32	31	51	0	ENST00000328354.6:c.1277C>T	p.Pro426Leu	p.P426L	ENST00000328354	NM_007194.3	426	cCt/cTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039411	47039411	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	204	484	0	ENST00000329236.7:c.803T>G	p.Phe268Cys	p.F268C	ENST00000329236	NM_001204466.1	268	tTt/tGt																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650871	48650871	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782534643		P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	114	521	1	ENST00000376670.3:c.740G>A	p.Arg247His	p.R247H	ENST00000376670	NM_002049.3	247	cGc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70348159	70348159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	381	585	0	ENST00000374080.3:c.3223G>A	p.Ala1075Thr	p.A1075T	ENST00000374080		1075	Gca/Aca																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11169039	11169039	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	340	446	0	ENST00000344626.4:c.4533+1del		p.K1511fs	ENST00000344626	NM_003072.3	1511	aaG/aa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28903772	28903772	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	102	523	0	ENST00000282397.4:c.2687del	p.Gly896GlufsTer10	p.G896Efs*10	ENST00000282397	NM_002019.4	896	gGa/ga																																																																															
DICER1	23405	MSKCC	GRCh37	14	95584074	95584074	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	136	357	0	ENST00000343455.3:c.1394del	p.Gly465AlafsTer15	p.G465Afs*15	ENST00000343455	NM_177438.2	465	gGc/gc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163793	47163793	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	291	469	0	ENST00000409792.3:c.2333del	p.Pro778GlnfsTer20	p.P778Qfs*20	ENST00000409792	NM_014159.6	778	cCa/ca																																																																															
TERT	7015	MSKCC	GRCh37	5	1254563	1254565	+	missense_variant	Missense_Mutation	ONP	CAC	CAC	AAA			P-0011334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	287	434	1	ENST00000310581.5:c.3213_3215delinsTTT	p.Gln1071_Trp1072delinsHisLeu	p.Q1071_W1072delinsHL	ENST00000310581	NM_198253.2	1071	caGTGg/caTTTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0011369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	498	360	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
PRDM1	639	MSKCC	GRCh37	6	106547360	106547360	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	183	317	0	ENST00000369096.4:c.597G>C	p.Trp199Cys	p.W199C	ENST00000369096	NM_001198.3	199	tgG/tgC																																																																															
ABL1	25	MSKCC	GRCh37	9	133759701	133759701	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	110	184	0	ENST00000318560.5:c.2024A>C	p.Glu675Ala	p.E675A	ENST00000318560	NM_005157.4	675	gAg/gCg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988192	36988192	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0011369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	98	134	0	ENST00000354822.5:c.461C>G	p.Ala154Gly	p.A154G	ENST00000354822	NM_001079668.2	154	gCc/gGc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106536249	106536341	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGCGGTACTTCGGTTCAGGCGGAGGCATCCTTACCAAGGAATCTGCTTTTCAAGTATGCCACCAACAGTGAAGAGGTAAGCCTCTGGTTTAT	TGGCGGTACTTCGGTTCAGGCGGAGGCATCCTTACCAAGGAATCTGCTTTTCAAGTATGCCACCAACAGTGAAGAGGTAAGCCTCTGGTTTAT	-			P-0011369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	298	378	0	ENST00000369096.4:c.218_291+19del		p.X73_splice	ENST00000369096	NM_001198.3	73																																																																																
BRCA1	672	MSKCC	GRCh37	17	41245492	41245493	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	603	553	0	ENST00000357654.3:c.2055dup	p.Glu686Ter	p.E686*	ENST00000357654	NM_007294.3	685	-/T																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	94	388	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0011554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	130	435	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41242984	41242984	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs876660601		P-0011554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	297	518	0	ENST00000357654.3:c.4162C>T	p.Gln1388Ter	p.Q1388*	ENST00000357654	NM_007294.3	1388	Cag/Tag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492883	56492887	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAT	GCCAT	-			P-0011554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	151	247	0	ENST00000407977.2:c.52_56del	p.Met18TyrfsTer20	p.M18Yfs*20	ENST00000407977		18	ATGGCt/t																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258769	115258770	+	stop_gained	Nonsense_Mutation	DNP	TG	TG	AA			P-0011554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	80	348	1	ENST00000369535.4:c.12_13delinsTT	p.Lys5Ter	p.K5*	ENST00000369535	NM_002524.4	4	taCAaa/taTTaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	165	411	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0012116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	285	500	0	ENST00000269305.4:c.782+1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
HIST3H3	8290	MSKCC	GRCh37	1	228612923	228612923	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	249	845	1	ENST00000366696.1:c.104G>T	p.Gly35Val	p.G35V	ENST00000366696	NM_003493.2	35	gGc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	642	430	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs985033810		P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	314	509	0	ENST00000269305.4:c.731G>T	p.Gly244Val	p.G244V	ENST00000269305	NM_001126112.2	244	gGc/gTc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59770854	59770854	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	71	459	0	ENST00000259008.2:c.2512G>C	p.Asp838His	p.D838H	ENST00000259008	NM_032043.2	838	Gat/Cat																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724433	162724433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	110	418	1	ENST00000367921.3:c.205G>T	p.Asp69Tyr	p.D69Y	ENST00000367921	NM_006182.2	69	Gat/Tat																																																																															
NF1	4763	MSKCC	GRCh37	17	29557285	29557285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367684252		P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	104	430	0	ENST00000358273.4:c.2998C>T	p.Arg1000Cys	p.R1000C	ENST00000358273	NM_001042492.2	1000	Cgt/Tgt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190744	11190744	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148876562		P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	142	498	0	ENST00000361445.4:c.5455C>T	p.His1819Tyr	p.H1819Y	ENST00000361445	NM_004958.3	1819	Cat/Tat																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199310	16199310	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	81	423	3	ENST00000375759.3:c.84-1G>T		p.X28_splice	ENST00000375759	NM_015001.2	28																																																																																
RAD54L	8438	MSKCC	GRCh37	1	46726606	46726606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	73	517	0	ENST00000371975.4:c.685G>A	p.Glu229Lys	p.E229K	ENST00000371975	NM_003579.3	229	Gag/Aag																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726992	46726992	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	105	666	0	ENST00000371975.4:c.826G>C	p.Glu276Gln	p.E276Q	ENST00000371975	NM_003579.3	276	Gag/Cag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25978890	25978890	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	46	361	0	ENST00000435504.4:c.1033G>T	p.Glu345Ter	p.E345*	ENST00000435504		345	Gaa/Taa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163865	47163865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	119	566	0	ENST00000409792.3:c.2261C>T	p.Ser754Leu	p.S754L	ENST00000409792	NM_014159.6	754	tCa/tTa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751508	57751508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	148	568	0	ENST00000274289.3:c.1483G>A	p.Glu495Lys	p.E495K	ENST00000274289	NM_006622.3	495	Gag/Aag																																																																															
JAK2	3717	MSKCC	GRCh37	9	5081742	5081742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	110	352	0	ENST00000381652.3:c.2452G>A	p.Glu818Lys	p.E818K	ENST00000381652	NM_004972.3	818	Gaa/Aaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717764	89717764	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	41	228	0	ENST00000371953.3:c.789G>C	p.Lys263Asn	p.K263N	ENST00000371953	NM_000314.4	263	aaG/aaC																																																																															
KDM5A	5927	MSKCC	GRCh37	12	432932	432932	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	141	400	0	ENST00000399788.2:c.1984G>C	p.Glu662Gln	p.E662Q	ENST00000399788	NM_001042603.1	662	Gaa/Caa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552696	18552696	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1023238256		P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	56	611	0	ENST00000266497.5:c.2107G>A	p.Glu703Lys	p.E703K	ENST00000266497		703	Gaa/Aaa																																																																															
POLE	5426	MSKCC	GRCh37	12	133235982	133235982	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	160	591	0	ENST00000320574.5:c.3174G>C	p.Lys1058Asn	p.K1058N	ENST00000320574	NM_006231.2	1058	aaG/aaC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910986	32910986	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1169	234	855	0	ENST00000380152.3:c.2494G>C	p.Glu832Gln	p.E832Q	ENST00000380152		832	Gag/Cag																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66782089	66782089	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	69	586	0	ENST00000307102.5:c.1056G>C	p.Leu352Phe	p.L352F	ENST00000307102	NM_002755.3	352	ttG/ttC																																																																															
BLM	641	MSKCC	GRCh37	15	91341542	91341542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	61	463	0	ENST00000355112.3:c.3333G>A	p.Met1111Ile	p.M1111I	ENST00000355112	NM_000057.2	1111	atG/atA																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78931424	78931424	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	54	473	0	ENST00000306801.3:c.3371G>C	p.Gly1124Ala	p.G1124A	ENST00000306801	NM_020761.2	1124	gGa/gCa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520208	9520208	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	149	520	0	ENST00000353224.5:c.2061G>C	p.Gln687His	p.Q687H	ENST00000353224	NM_177990.2	687	caG/caC																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264401	46264401	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1475	189	893	0	ENST00000371998.3:c.1448C>G	p.Ser483Cys	p.S483C	ENST00000371998		483	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764146326		P-0012142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	490	633	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																															
MED12	9968	MSKCC	GRCh37	X	70354226	70354226	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1423751717		P-0012142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	207	727	2	ENST00000374080.3:c.4637C>T	p.Thr1546Met	p.T1546M	ENST00000374080		1546	aCg/aTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099342	157099342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	151	494	0	ENST00000346085.5:c.279C>A	p.His93Gln	p.H93Q	ENST00000346085	NM_020732.3	93	caC/caA																																																																															
STAT3	6774	MSKCC	GRCh37	17	40468897	40468897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	49	601	0	ENST00000264657.5:c.2167G>A	p.Asp723Asn	p.D723N	ENST00000264657	NM_139276.2	723	Gac/Aac																																																																															
MGA	23269	MSKCC	GRCh37	15	42054540	42054541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	470	715	2	ENST00000219905.7:c.7731dup	p.Asp2578ArgfsTer45	p.D2578Rfs*45	ENST00000219905	NM_001164273.1	2575	aga/agAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0012204-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	89	662	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98240362	98240362	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767273237		P-0012204-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	143	526	1	ENST00000331920.6:c.1322G>A	p.Arg441His	p.R441H	ENST00000331920	NM_000264.3	441	cGc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16265795	16265795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012204-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	106	804	2	ENST00000375759.3:c.10868C>T	p.Ala3623Val	p.A3623V	ENST00000375759	NM_015001.2	3623	gCc/gTc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44921966	44921966	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012204-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	314	665	0	ENST00000377967.4:c.1500T>G	p.Ser500Arg	p.S500R	ENST00000377967	NM_021140.2	500	agT/agG																																																																															
STAG2	10735	MSKCC	GRCh37	X	123215315	123215315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012204-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	395	899	0	ENST00000218089.9:c.2861G>A	p.Arg954His	p.R954H	ENST00000218089	NM_001042749.1	954	cGt/cAt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111503	8111507	+	frameshift_variant	Frame_Shift_Del	DEL	GGAAT	GGAAT	-			P-0012204-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	172	668	0	ENST00000346208.3:c.990_994del	p.Arg330SerfsTer20	p.R330Sfs*20	ENST00000346208		330	aGGAAT/a																																																																															
FLT3	2322	MSKCC	GRCh37	13	28597601	28597706	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATATTCAATTTCATCTGTAAAATAGAGCCAGTCTTCACTTTTGCCAAAACTCTAAGAAGTTGCCTTATTAAATCTCTATGGGAAGGTTATTCAAGCCAGAGTTAGG	ATATTCAATTTCATCTGTAAAATAGAGCCAGTCTTCACTTTTGCCAAAACTCTAAGAAGTTGCCTTATTAAATCTCTATGGGAAGGTTATTCAAGCCAGAGTTAGG	GTAGTCA			P-0012204-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	71	610	0	ENST00000241453.7:c.2291-92_2304delinsTGACTAC		p.X764_splice	ENST00000241453	NM_004119.2	764																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0012223-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			653	571	436	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
NF1	4763	MSKCC	GRCh37	17	29562664	29562664	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012223-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			335	386	536	0	ENST00000358273.4:c.3745del	p.Ser1249LeufsTer17	p.S1249Lfs*17	ENST00000358273	NM_001042492.2	1248	gaT/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	193	470	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688735	47688735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	91	398	1	ENST00000347630.2:c.565G>A	p.Glu189Lys	p.E189K	ENST00000347630	NM_001007230.1	189	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256501	16256501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	50	409	1	ENST00000375759.3:c.3766G>A	p.Glu1256Lys	p.E1256K	ENST00000375759	NM_015001.2	1256	Gaa/Aaa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849835	156849835	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	158	424	0	ENST00000524377.1:c.2091G>C	p.Glu697Asp	p.E697D	ENST00000524377	NM_002529.3	697	gaG/gaC																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464454	25464454	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	141	443	0	ENST00000264709.3:c.2059G>T	p.Val687Phe	p.V687F	ENST00000264709	NM_175629.2	687	Gtc/Ttc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356385	66356385	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	34	398	0	ENST00000273854.3:c.1112C>G	p.Thr371Ser	p.T371S	ENST00000273854	NM_004439.5	371	aCt/aGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532796	187532796	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	44	516	0	ENST00000441802.2:c.9597G>C	p.Leu3199Phe	p.L3199F	ENST00000441802	NM_005245.3	3199	ttG/ttC																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120647	94120647	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	151	751	0	ENST00000369303.4:c.404G>C	p.Gly135Ala	p.G135A	ENST00000369303	NM_004440.3	135	gGc/gCc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341917	8341917	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	38	417	0	ENST00000356435.5:c.4723C>A	p.His1575Asn	p.H1575N	ENST00000356435		1575	Cat/Aat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389245	8389245	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	61	498	0	ENST00000356435.5:c.4373A>G	p.Glu1458Gly	p.E1458G	ENST00000356435		1458	gAa/gGa																																																																															
ABL1	25	MSKCC	GRCh37	9	133755519	133755519	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs62580066		P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	139	469	0	ENST00000318560.5:c.1488G>T	p.Met496Ile	p.M496I	ENST00000318560	NM_005157.4	496	atG/atT																																																																															
RET	5979	MSKCC	GRCh37	10	43609007	43609007	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1398378776		P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	68	616	0	ENST00000355710.3:c.1763G>A	p.Gly588Asp	p.G588D	ENST00000355710	NM_020975.4	588	gGc/gAc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456485	32456485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	55	110	1	ENST00000332351.3:c.407C>T	p.Pro136Leu	p.P136L	ENST00000332351	NM_024426.4	136	cCt/cTt																																																																															
YAP1	10413	MSKCC	GRCh37	11	102098231	102098231	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	42	428	0	ENST00000282441.5:c.1195G>C	p.Asp399His	p.D399H	ENST00000282441	NM_001130145.2	399	Gac/Cac																																																																															
NF1	4763	MSKCC	GRCh37	17	29559764	29559764	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	77	422	0	ENST00000358273.4:c.3361G>T	p.Glu1121Ter	p.E1121*	ENST00000358273	NM_001042492.2	1121	Gaa/Taa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39617679	39617679	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	101	405	1	ENST00000262039.4:c.1863G>T	p.Leu621Phe	p.L621F	ENST00000262039	NM_002647.2	621	ttG/ttT																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175811	24175811	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	37	447	0	ENST00000263121.7:c.1039G>C	p.Asp347His	p.D347H	ENST00000263121	NM_003073.3	347	Gac/Cac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44966723	44966723	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	98	303	0	ENST00000377967.4:c.3947A>T	p.Glu1316Val	p.E1316V	ENST00000377967	NM_021140.2	1316	gAg/gTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53240997	53240997	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	142	320	0	ENST00000375401.3:c.1214A>C	p.Lys405Thr	p.K405T	ENST00000375401	NM_004187.3	405	aAa/aCa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573508	48573539	+	frameshift_variant	Frame_Shift_Del	DEL	AGAGTGAAACATTTGCAAAAAGAGCAATTGAA	AGAGTGAAACATTTGCAAAAAGAGCAATTGAA	-			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	71	378	0	ENST00000342988.3:c.94_125del	p.Ser32PhefsTer11	p.S32Ffs*11	ENST00000342988	NM_005359.5	31	gAGAGTGAAACATTTGCAAAAAGAGCAATTGAA/g																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188829	32188829	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	43	433	0	ENST00000375023.3:c.725del	p.Gly242AlafsTer10	p.G242Afs*10	ENST00000375023	NM_004557.3	242	gGc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	197	586	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0012456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	71	280	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	161	680	0	ENST00000269305.4:c.400T>G	p.Phe134Val	p.F134V	ENST00000269305	NM_001126112.2	134	Ttt/Gtt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912306	29912306	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761593088		P-0012456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	113	542	0	ENST00000376809.5:c.925G>A	p.Val309Met	p.V309M	ENST00000376809	NM_002116.7	309	Gtg/Atg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176015390	176015390	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	139	696	0	ENST00000367669.3:c.1348T>C	p.Tyr450His	p.Y450H	ENST00000367669	NM_022457.5	450	Tat/Cat																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87563461	87563461	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1211018594		P-0012513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	55	547	0	ENST00000277120.3:c.1849G>A	p.Val617Ile	p.V617I	ENST00000277120		617	Gtc/Atc																																																																															
ATM	472	MSKCC	GRCh37	11	108117843	108117843	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	42	339	0	ENST00000278616.4:c.1054A>C	p.Ile352Leu	p.I352L	ENST00000278616	NM_000051.3	352	Atc/Ctc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435219	49435219	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	106	392	0	ENST00000301067.7:c.6334G>T	p.Ala2112Ser	p.A2112S	ENST00000301067	NM_003482.3	2112	Gca/Tca																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487947	56487947	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	69	675	0	ENST00000267101.3:c.1678G>C	p.Glu560Gln	p.E560Q	ENST00000267101	NM_001982.3	560	Gag/Cag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624231	89624252	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCCATCATCAAAGAGATCGT	CAGCCATCATCAAAGAGATCGT	-			P-0012513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	68	96	0	ENST00000371953.3:c.5_26del	p.Thr2IlefsTer15	p.T2Ifs*15	ENST00000371953	NM_000314.4	2	aCAGCCATCATCAAAGAGATCGTt/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0012562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	270	527	0	ENST00000269305.4:c.920-2A>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
DDR2	4921	MSKCC	GRCh37	1	162740300	162740300	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A	rs1259672230		P-0012562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	171	400	1	ENST00000367921.3:c.1502C>A	p.Ser501Ter	p.S501*	ENST00000367921	NM_006182.2	501	tCa/tAa																																																																															
BCL6	604	MSKCC	GRCh37	3	187442729	187442729	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0012562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	158	374	1	ENST00000232014.4:c.1977T>A	p.His659Gln	p.H659Q	ENST00000232014	NM_001130845.1	659	caT/caA																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100405	8100405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1178	158	953	1	ENST00000346208.3:c.379C>T	p.Pro127Ser	p.P127S	ENST00000346208		127	Ccg/Tcg																																																																															
RB1	5925	MSKCC	GRCh37	13	48942673	48942673	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs764547244		P-0012562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	148	628	0	ENST00000267163.4:c.1060C>T	p.Gln354Ter	p.Q354*	ENST00000267163	NM_000321.2	354	Cag/Tag																																																																															
STAG2	10735	MSKCC	GRCh37	X	123196967	123196967	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0012562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	66	303	0	ENST00000218089.9:c.1733A>G	p.Tyr578Cys	p.Y578C	ENST00000218089	NM_001042749.1	578	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	175	792	1	ENST00000269305.4:c.808T>C	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	Ttt/Ctt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354369	354369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	105	604	0	ENST00000262320.3:c.1189G>A	p.Glu397Lys	p.E397K	ENST00000262320	NM_003502.3	397	Gag/Aag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	65	488	0	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0012782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1683	315	482	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0012782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	724	469	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579435	7579441	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCGCC	GGCCGCC	-			P-0012782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	300	451	0	ENST00000269305.4:c.246_252del	p.Ala83LeufsTer38	p.A83Lfs*38	ENST00000269305	NM_001126112.2	82	ccGGCGGCC/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012829-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			614	77	354	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0012829-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	17	145	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941003	71941004	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012829-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			677	79	531	0	ENST00000298229.2:c.884dup	p.Ala296SerfsTer8	p.A296Sfs*8	ENST00000298229	NM_001567.3	293	-/C																																																																															
TP53	7157	MSKCC	GRCh37	17	7576846	7576882	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGG	TTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGG	-			P-0012829-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			375	25	285	0	ENST00000269305.4:c.964_993+7del		p.X322_splice	ENST00000269305	NM_001126112.2	322																																																																																
EP300	2033	MSKCC	GRCh37	22	41542754	41542754	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012829-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			488	68	318	0	ENST00000263253.7:c.2065C>A	p.Pro689Thr	p.P689T	ENST00000263253	NM_001429.3	689	Cct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934571		P-0012864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	181	628	1	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117663653	117663653	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs369511700		P-0012864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	123	546	0	ENST00000368508.3:c.4579A>G	p.Met1527Val	p.M1527V	ENST00000368508	NM_002944.2	1527	Atg/Gtg																																																																															
BARD1	580	MSKCC	GRCh37	2	215593477	215593477	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	118	521	0	ENST00000260947.4:c.2257G>T	p.Gly753Cys	p.G753C	ENST00000260947	NM_000465.2	753	Ggc/Tgc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193218952	193218952	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1292596060		P-0012864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	200	672	0	ENST00000367435.3:c.1510C>A	p.Arg504Ser	p.R504S	ENST00000367435	NM_024529.4	504	Cgt/Agt																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794130	242794130	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	141	736	1	ENST00000334409.5:c.598A>G	p.Ile200Val	p.I200V	ENST00000334409	NM_005018.2	200	Ata/Gta																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873074	134873074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	70	696	0	ENST00000398015.3:c.1378C>G	p.Pro460Ala	p.P460A	ENST00000398015	NM_004441.4	460	Ccc/Gcc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026721	6026721	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	73	442	2	ENST00000265849.7:c.1675G>T	p.Gly559Ter	p.G559*	ENST00000265849	NM_000535.5	559	Gga/Tga																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729622	41729622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	297	1046	0	ENST00000242208.4:c.907C>A	p.His303Asn	p.H303N	ENST00000242208	NM_002192.2	303	Cac/Aac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845691	151845691	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	84	662	0	ENST00000262189.6:c.13321G>T	p.Glu4441Ter	p.E4441*	ENST00000262189	NM_170606.2	4441	Gag/Tag																																																																															
CCND1	595	MSKCC	GRCh37	11	69462870	69462870	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	209	783	1	ENST00000227507.2:c.683G>T	p.Arg228Leu	p.R228L	ENST00000227507	NM_053056.2	228	cGc/cTc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18491379	18491379	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs190750617		P-0012864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	59	466	0	ENST00000266497.5:c.1292T>C	p.Ile431Thr	p.I431T	ENST00000266497		431	aTt/aCt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533068	63533068	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370618491		P-0012864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	217	715	2	ENST00000307078.5:c.1826C>T	p.Pro609Leu	p.P609L	ENST00000307078	NM_004655.3	609	cCc/cTc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42852485	42852485	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	251	829	1	ENST00000398585.3:c.601C>T	p.Gln201Ter	p.Q201*	ENST00000398585	NM_001135099.1	201	Cag/Tag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932025	39932025	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	110	719	0	ENST00000378444.4:c.2574G>C	p.Glu858Asp	p.E858D	ENST00000378444	NM_001123385.1	858	gaG/gaC																																																																															
MED12	9968	MSKCC	GRCh37	X	70354619	70354619	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	85	807	0	ENST00000374080.3:c.4784C>G	p.Ala1595Gly	p.A1595G	ENST00000374080		1595	gCt/gGt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11113789	11113789	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	161	638	0	ENST00000344626.4:c.1897del	p.Ala633ProfsTer13	p.A633Pfs*13	ENST00000344626	NM_003072.3	633	Gcc/cc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121438948	121438948	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146855738		P-0012914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1703	189	872	0	ENST00000257555.6:c.1849G>A	p.Val617Ile	p.V617I	ENST00000257555		617	Gtc/Atc																																																																															
ATM	472	MSKCC	GRCh37	11	108180892	108180892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	161	381	0	ENST00000278616.4:c.5768C>T	p.Ser1923Phe	p.S1923F	ENST00000278616	NM_000051.3	1923	tCt/tTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432497	49432497	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775911186		P-0012919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	115	494	0	ENST00000301067.7:c.8642G>A	p.Arg2881Gln	p.R2881Q	ENST00000301067	NM_003482.3	2881	cGg/cAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348041	89348041	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	417	1158	0	ENST00000301030.4:c.4909A>T	p.Ile1637Phe	p.I1637F	ENST00000301030	NM_001256183.1	1637	Att/Ttt																																																																															
NF1	4763	MSKCC	GRCh37	17	29496921	29496921	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	79	356	0	ENST00000358273.4:c.492A>T	p.Leu164Phe	p.L164F	ENST00000358273	NM_001042492.2	164	ttA/ttT																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59858338	59858338	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	85	332	1	ENST00000259008.2:c.1657C>T	p.Gln553Ter	p.Q553*	ENST00000259008	NM_032043.2	553	Caa/Taa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942752	44942752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	87	682	0	ENST00000377967.4:c.3332G>A	p.Arg1111His	p.R1111H	ENST00000377967	NM_021140.2	1111	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576856	+	stop_gained,splice_region_variant	Nonsense_Mutation	DNP	GA	GA	AT			P-0012919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	207	542	0	ENST00000269305.4:c.990_991delinsAT	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	330	ctTCag/ctATag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0012976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	109	517	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	231	635	1	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207092	1207092	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs778376925		P-0012976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	216	620	0	ENST00000326873.7:c.180C>G	p.Tyr60Ter	p.Y60*	ENST00000326873	NM_000455.4	60	taC/taG																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431352	121431352	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	35	403	0	ENST00000257555.6:c.556A>G	p.Ile186Val	p.I186V	ENST00000257555		186	Att/Gtt																																																																															
NF1	4763	MSKCC	GRCh37	17	29684314	29684314	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750754640		P-0012976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	271	544	0	ENST00000358273.4:c.7897G>A	p.Glu2633Lys	p.E2633K	ENST00000358273	NM_001042492.2	2633	Gag/Aag																																																																															
EP300	2033	MSKCC	GRCh37	22	41572362	41572362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	39	494	0	ENST00000263253.7:c.4891C>T	p.Leu1631Phe	p.L1631F	ENST00000263253	NM_001429.3	1631	Ctc/Ttc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860080	57860080	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs563340967		P-0013032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1324	188	938	0	ENST00000228682.2:c.820G>A	p.Gly274Ser	p.G274S	ENST00000228682	NM_005269.2	274	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0013032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	89	426	0	ENST00000269305.4:c.376T>C	p.Tyr126His	p.Y126H	ENST00000269305	NM_001126112.2	126	Tac/Cac																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278062	18278062	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	106	596	0	ENST00000222254.8:c.1682A>C	p.Asn561Thr	p.N561T	ENST00000222254	NM_005027.3	561	aAc/aCc																																																																															
APC	324	MSKCC	GRCh37	5	112175866	112175867	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCTCCAGTTCAGGAAAATGACAATGGGAATGAAA			P-0013032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	36	374	0	ENST00000257430.4:c.4577_4610dup	p.Glu1538SerfsTer6	p.E1538Sfs*6	ENST00000257430	NM_000038.5	1525	-/CCTCCAGTTCAGGAAAATGACAATGGGAATGAAA																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866452	42866506	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TTCCGGTTGGTATCCATGGTTTTCATAGTAAGGTCCAATAGCTGGTGGTGACCCC	TTCCGGTTGGTATCCATGGTTTTCATAGTAAGGTCCAATAGCTGGTGGTGACCCC	-			P-0013032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1399	128	904	0	ENST00000398585.3:c.127-1_180del		p.X43_splice	ENST00000398585	NM_001135099.1	43																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38060573	38060573	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1359	164	858	0	ENST00000250448.2:c.1416del	p.Ter473SerfsTer11	p.*473Sfs*11	ENST00000250448	NM_004496.3	472	tcC/tc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912364	29912364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	198	460	1	ENST00000376809.5:c.983C>T	p.Ala328Val	p.A328V	ENST00000376809	NM_002116.7	328	gCt/gTt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609861	117609861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	242	757	1	ENST00000368508.3:c.6838G>A	p.Glu2280Lys	p.E2280K	ENST00000368508	NM_002944.2	2280	Gaa/Aaa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001394	150001394	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	240	548	2	ENST00000253339.5:c.2210G>T	p.Arg737Leu	p.R737L	ENST00000253339		737	cGa/cTa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89725111	89725112	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0013050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	32	95	0	ENST00000371953.3:c.1095_1096insCA	p.Thr366GlnfsTer51	p.T366Qfs*51	ENST00000371953	NM_000314.4	365	gta/gtACa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	336	365	0	ENST00000269305.4:c.538G>T	p.Glu180Ter	p.E180*	ENST00000269305	NM_001126112.2	180	Gag/Tag																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138433375	138433375	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1348630621		P-0013149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	443	578	0	ENST00000289153.2:c.1237A>G	p.Thr413Ala	p.T413A	ENST00000289153	NM_006219.2	413	Acg/Gcg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001124	150001124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	457	559	0	ENST00000253339.5:c.2480G>C	p.Arg827Thr	p.R827T	ENST00000253339		827	aGa/aCa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961905	15961905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	268	360	0	ENST00000268712.3:c.5890C>G	p.His1964Asp	p.H1964D	ENST00000268712	NM_006311.3	1964	Cac/Gac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961910	15961912	+	missense_variant,splice_region_variant	Missense_Mutation	ONP	GAT	GAT	AAA			P-0013149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	236	330	2	ENST00000268712.3:c.5883_5885delinsTTT	p.Leu1961_Ser1962delinsPhePhe	p.L1961_S1962delinsFF	ENST00000268712	NM_006311.3	1961	ttATCt/ttTTTt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984023	2984024	+	missense_variant	Missense_Mutation	DNP	CG	CG	TT			P-0013149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	454	583	0	ENST00000396946.4:c.506_507delinsAA	p.Thr169Lys	p.T169K	ENST00000396946	NM_032415.4	169	aCG/aAA																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699247	117699247	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	185	595	0	ENST00000369458.3:c.394A>G	p.Ile132Val	p.I132V	ENST00000369458	NM_024626.3	132	Atc/Gtc																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913233		P-0013526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	455	507	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438703	49438703	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	437	499	0	ENST00000301067.7:c.4787del	p.Gly1596AlafsTer8	p.G1596Afs*8	ENST00000301067	NM_003482.3	1596	gGc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579324	7579325	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0013526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	197	392	0	ENST00000269305.4:c.362_363del	p.Ser121CysfsTer27	p.S121Cfs*27	ENST00000269305	NM_001126112.2	121	tCT/t																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662313	227662313	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	266	376	0	ENST00000305123.5:c.1142G>C	p.Arg381Pro	p.R381P	ENST00000305123	NM_005544.2	381	cGc/cCc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061223	38061228	+	inframe_deletion	In_Frame_Del	DEL	TCTCGA	TCTCGA	-			P-0013660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	156	437	0	ENST00000250448.2:c.761_766del	p.Phe254_Asn256delinsTyr	p.F254_N256delinsY	ENST00000250448	NM_004496.3	254	tTCGAGAac/tac																																																																															
POLE	5426	MSKCC	GRCh37	12	133202295	133202295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	150	547	0	ENST00000320574.5:c.6593C>T	p.Ala2198Val	p.A2198V	ENST00000320574	NM_006231.2	2198	gCc/gTc																																																																															
CDH1	999	MSKCC	GRCh37	16	68772316	68772316	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0013660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	84	414	0	ENST00000261769.5:c.163+2T>G		p.X55_splice	ENST00000261769	NM_004360.3	55																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106515161	106515161	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1017	281	578	0	ENST00000359195.3:c.2304A>T	p.Lys768Asn	p.K768N	ENST00000359195	NM_002649.2	768	aaA/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0013755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	456	621	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433066	49433066	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772742966		P-0013755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	213	664	0	ENST00000301067.7:c.8305G>A	p.Asp2769Asn	p.D2769N	ENST00000301067	NM_003482.3	2769	Gat/Aat																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098815	178098815	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1405	278	746	0	ENST00000397062.3:c.230A>T	p.Asp77Val	p.D77V	ENST00000397062	NM_006164.4	77	gAt/gTt																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944813	31944813	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	322	619	0	ENST00000340398.3:c.288C>A	p.Ser96Arg	p.S96R	ENST00000340398	NM_001013699.2	96	agC/agA																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231391	46231391	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1317781343		P-0013755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	200	480	1	ENST00000334344.6:c.1231G>A	p.Asp411Asn	p.D411N	ENST00000334344	NM_152641.2	411	Gat/Aat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910545	32910545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1243	221	835	0	ENST00000380152.3:c.2053G>A	p.Asp685Asn	p.D685N	ENST00000380152		685	Gat/Aat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604656	48604656	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	354	504	0	ENST00000342988.3:c.1478A>T	p.Asp493Val	p.D493V	ENST00000342988	NM_005359.5	493	gAt/gTt																																																																															
AKT2	208	MSKCC	GRCh37	19	40741972	40741972	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	554	608	0	ENST00000392038.2:c.1000T>G	p.Trp334Gly	p.W334G	ENST00000392038	NM_001626.4	334	Tgg/Ggg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024668	31024668	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	503	749	1	ENST00000375687.4:c.4153A>T	p.Arg1385Trp	p.R1385W	ENST00000375687	NM_015338.5	1385	Agg/Tgg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24143269	24143269	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0013755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	421	787	0	ENST00000263121.7:c.500+1G>A		p.X167_splice	ENST00000263121	NM_003073.3	167																																																																																
PDGFRA	5156	MSKCC	GRCh37	4	55131217	55131217	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0013755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	376	502	0	ENST00000257290.5:c.759+1G>T		p.X253_splice	ENST00000257290	NM_006206.4	253																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66467609	66467609	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	94	489	1	ENST00000273854.3:c.660C>A	p.Cys220Ter	p.C220*	ENST00000273854	NM_004439.5	220	tgC/tgA																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553631	106553631	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	220	386	0	ENST00000369096.4:c.1596A>T	p.Lys532Asn	p.K532N	ENST00000369096	NM_001198.3	532	aaA/aaT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545602	106545602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	291	550	1	ENST00000359195.3:c.3079C>A	p.Leu1027Met	p.L1027M	ENST00000359195	NM_002649.2	1027	Ctg/Atg																																																																															
BRAF	673	MSKCC	GRCh37	7	140439656	140439656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	124	239	0	ENST00000288602.6:c.2083G>C	p.Glu695Gln	p.E695Q	ENST00000288602	NM_004333.4	695	Gag/Cag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221318	1221319	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0013755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	353	596	0	ENST00000326873.7:c.841_842delinsT	p.Pro281CysfsTer6	p.P281Cfs*6	ENST00000326873	NM_000455.4	281	CCg/Tg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	274	491	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	22	259	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0013828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	332	537	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0013828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	348	572	2	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0013828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	351	559	2	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968251	134968251	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373797543		P-0013828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	622	669	1	ENST00000398015.3:c.2764G>A	p.Ala922Thr	p.A922T	ENST00000398015	NM_004441.4	922	Gcc/Acc																																																																															
RAB35	11021	MSKCC	GRCh37	12	120546223	120546223	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0013828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	78	629	2	ENST00000229340.5:c.101C>G	p.Ser34Ter	p.S34*	ENST00000229340	NM_006861.6	34	tCa/tGa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88726687	88726687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	284	554	1	ENST00000360948.2:c.357G>T	p.Gln119His	p.Q119H	ENST00000360948	NM_001012338.2	119	caG/caT																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382145	152382145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	110	346	0	ENST00000206249.3:c.1255G>A	p.Glu419Lys	p.E419K	ENST00000206249	NM_000125.3	419	Gag/Aag																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080626	5080626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	41	587	1	ENST00000381652.3:c.2377G>A	p.Asp793Asn	p.D793N	ENST00000381652	NM_004972.3	793	Gat/Aat																																																																															
ABL1	25	MSKCC	GRCh37	9	133759984	133759984	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	50	628	0	ENST00000318560.5:c.2307G>C	p.Glu769Asp	p.E769D	ENST00000318560	NM_005157.4	769	gaG/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	263	574	1	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502874	186502874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	473	967	1	ENST00000323963.5:c.332G>A	p.Arg111Lys	p.R111K	ENST00000323963		111	aGa/aAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0014004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	666	612	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945543	54945543	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs774552788		P-0014004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	517	796	0	ENST00000312783.6:c.1027C>T	p.Arg343Trp	p.R343W	ENST00000312783	NM_198436.1	343	Cgg/Tgg																																																																															
ATR	545	MSKCC	GRCh37	3	142274923	142274923	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	438	572	0	ENST00000350721.4:c.2137C>T	p.Gln713Ter	p.Q713*	ENST00000350721	NM_001184.3	713	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0014072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	841	494	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540652		P-0014072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	634	604	0	ENST00000269305.4:c.743G>C	p.Arg248Pro	p.R248P	ENST00000269305	NM_001126112.2	248	cGg/cCg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877352	40877352	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	213	411	0	ENST00000373198.4:c.2344G>T	p.Gly782Cys	p.G782C	ENST00000373198	NM_133170.3	782	Ggc/Tgc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244815	46244815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	841	850	0	ENST00000334344.6:c.2909C>T	p.Pro970Leu	p.P970L	ENST00000334344	NM_152641.2	970	cCa/cTa																																																																															
MGA	23269	MSKCC	GRCh37	15	42028377	42028377	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0014072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	550	492	0	ENST00000219905.7:c.3917-2A>T		p.X1306_splice	ENST00000219905	NM_001164273.1	1306																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72984504	72984504	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1291	449	828	1	ENST00000268489.5:c.3080G>A	p.Trp1027Ter	p.W1027*	ENST00000268489	NM_006885.3	1027	tGg/tAg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2199886	2199886	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	368	679	0	ENST00000398665.3:c.655G>T	p.Glu219Ter	p.E219*	ENST00000398665	NM_032482.2	219	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602767	10602767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	683	593	0	ENST00000171111.5:c.811G>T	p.Val271Leu	p.V271L	ENST00000171111	NM_203500.1	271	Gtg/Ttg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198265518	198265518	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	1811	585	2	ENST00000335508.6:c.2639G>T	p.Gly880Val	p.G880V	ENST00000335508	NM_012433.2	880	gGa/gTa																																																																															
ATR	545	MSKCC	GRCh37	3	142212140	142212140	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	215	415	0	ENST00000350721.4:c.5912A>T	p.Gln1971Leu	p.Q1971L	ENST00000350721	NM_001184.3	1971	cAg/cTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111579	56111579	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	166	206	2	ENST00000399503.3:c.179G>T	p.Arg60Leu	p.R60L	ENST00000399503	NM_005921.1	60	cGg/cTg																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225400	26225400	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2413	472	905	0	ENST00000360408.1:c.18G>C	p.Gln6His	p.Q6H	ENST00000360408	NM_003532.2	6	caG/caC																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680598	30680598	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	319	552	0	ENST00000376406.3:c.1121C>G	p.Ala374Gly	p.A374G	ENST00000376406	NM_014641.2	374	gCt/gGt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099802	157099802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	621	504	0	ENST00000346085.5:c.739C>A	p.Arg247Ser	p.R247S	ENST00000346085	NM_020732.3	247	Cgc/Agc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080616	5080616	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	328	684	0	ENST00000381652.3:c.2367T>G	p.Asp789Glu	p.D789E	ENST00000381652	NM_004972.3	789	gaT/gaG																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87338624	87338624	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0014072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	270	584	0	ENST00000277120.3:c.720G>T	p.Met240Ile	p.M240I	ENST00000277120		240	atG/atT																																																																															
JAK2	3717	MSKCC	GRCh37	9	5089834	5089839	+	frameshift_variant	Frame_Shift_Del	DEL	TAAAGT	TAAAGT	G			P-0014072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	240	517	0	ENST00000381652.3:c.2732_2737delinsG	p.Val911GlyfsTer12	p.V911Gfs*12	ENST00000381652	NM_004972.3	911	gTAAAGTac/gGac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0014090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	768	510	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475078	40475078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	363	830	0	ENST00000264657.5:c.1832G>T	p.Ser611Ile	p.S611I	ENST00000264657	NM_139276.2	611	aGt/aTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971132	21971132	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	128	168	0	ENST00000304494.5:c.226del	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	76	Gcc/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827678	72827678	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1475232597		P-0014090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	865	833	1	ENST00000268489.5:c.8903A>G	p.Tyr2968Cys	p.Y2968C	ENST00000268489	NM_006885.3	2968	tAc/tGc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30320326	30320326	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	507	402	5	ENST00000322652.5:c.1267C>T	p.Arg423Ter	p.R423*	ENST00000322652	NM_015355.2	423	Cga/Tga																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747949	41747949	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	28	267	0	ENST00000226382.2:c.820G>C	p.Ala274Pro	p.A274P	ENST00000226382	NM_003924.3	274	Gct/Cct																																																																															
RAD50	10111	MSKCC	GRCh37	5	131939183	131939183	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0014090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	538	392	2	ENST00000265335.6:c.2397+2T>G		p.X799_splice	ENST00000265335		799																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32163300	32163300	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1111	335	823	1	ENST00000375023.3:c.5926C>G	p.Pro1976Ala	p.P1976A	ENST00000375023	NM_004557.3	1976	Ccg/Gcg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400140	139400140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	1047	688	0	ENST00000277541.6:c.4208G>T	p.Cys1403Phe	p.C1403F	ENST00000277541	NM_017617.3	1403	tGt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0014120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1621	120	504	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865275	57865275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	198	982	3	ENST00000228682.2:c.2752G>A	p.Ala918Thr	p.A918T	ENST00000228682	NM_005269.2	918	Gcc/Acc																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023142	33023142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	52	905	0	ENST00000300177.4:c.251C>A	p.Thr84Lys	p.T84K	ENST00000300177	NM_001191322.1	84	aCg/aAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15964880	15964880	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	53	753	0	ENST00000268712.3:c.5716G>T	p.Asp1906Tyr	p.D1906Y	ENST00000268712	NM_006311.3	1906	Gat/Tat																																																																															
MLH1	4292	MSKCC	GRCh37	3	37089021	37089038	+	inframe_deletion	In_Frame_Del	DEL	GCTCTTTGACCTTGCCAT	GCTCTTTGACCTTGCCAT	-			P-0014120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	31	396	0	ENST00000231790.2:c.1746_1763del	p.Phe583_Leu588del	p.F583_L588del	ENST00000231790	NM_000249.3	581	ccGCTCTTTGACCTTGCCATg/ccg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	865	511	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0014158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	298	558	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11193154	11193154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	309	643	0	ENST00000361445.4:c.5347G>T	p.Asp1783Tyr	p.D1783Y	ENST00000361445	NM_004958.3	1783	Gac/Tac																																																																															
MGA	23269	MSKCC	GRCh37	15	42035054	42035055	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0014158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1208	637	1210	0	ENST00000219905.7:c.4897_4898del	p.Thr1633HisfsTer6	p.T1633Hfs*6	ENST00000219905	NM_001164273.1	1632	gcCAcc/gccc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202274	138202274	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	272	474	1	ENST00000237289.4:c.2191G>T	p.Glu731Ter	p.E731*	ENST00000237289	NM_001270507.1	731	Gag/Tag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745620	162745620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	64	500	2	ENST00000367921.3:c.2035G>A	p.Val679Ile	p.V679I	ENST00000367921	NM_006182.2	679	Gta/Ata																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100727	8100728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs771019738		P-0014235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	187	768	3	ENST00000346208.3:c.708dup	p.Ser237GlnfsTer66	p.S237Qfs*66	ENST00000346208		234	ttc/ttCc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998753	100998753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	340	672	0	ENST00000325455.5:c.1049C>T	p.Ser350Phe	p.S350F	ENST00000325455	NM_001202474.3	350	tCc/tTc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061218	38061230	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGTTCTCGAAC	GCCGTTCTCGAAC	-			P-0014235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	300	560	0	ENST00000250448.2:c.759_771del	p.Met253IlefsTer64	p.M253Ifs*64	ENST00000250448	NM_004496.3	253	atGTTCGAGAACGGC/at																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061836	38061862	+	inframe_deletion	In_Frame_Del	DEL	GTTCATGGTCATGTAGGTGTTCATGGA	GTTCATGGTCATGTAGGTGTTCATGGA	-			P-0014235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1361	394	1121	3	ENST00000250448.2:c.127_153del	p.Ser43_Asn51del	p.S43_N51del	ENST00000250448	NM_004496.3	43	TCCATGAACACCTACATGACCATGAAC/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0014235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	520	791	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873587	151873588	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	77	537	0	ENST00000262189.6:c.8950dup	p.Ser2984PhefsTer18	p.S2984Ffs*18	ENST00000262189	NM_170606.2	2984	tct/tTct																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0014271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	740	533	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs876660254		P-0014271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	333	691	0	ENST00000269305.4:c.568C>A	p.Pro190Thr	p.P190T	ENST00000269305	NM_001126112.2	190	Cct/Act																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828360	72828361	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0014271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	180	513	0	ENST00000268489.5:c.8220_8221del	p.Arg2740SerfsTer15	p.R2740Sfs*15	ENST00000268489	NM_006885.3	2740	agAGct/agct																																																																															
YAP1	10413	MSKCC	GRCh37	11	101985002	101985002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	181	430	2	ENST00000282441.5:c.449G>A	p.Gly150Asp	p.G150D	ENST00000282441	NM_001130145.2	150	gGc/gAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2114359	2114359	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1360209954		P-0014271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1351	261	947	0	ENST00000219476.3:c.1530G>C	p.Gln510His	p.Q510H	ENST00000219476	NM_000548.3	510	caG/caC																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435381	56435381	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1403551128		P-0014271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	190	700	0	ENST00000407977.2:c.1756C>T	p.Gln586Ter	p.Q586*	ENST00000407977		586	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	1022	1065	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0014276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	543	662	3	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18658334	18658334	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	65	458	0	ENST00000266497.5:c.3139A>G	p.Met1047Val	p.M1047V	ENST00000266497		1047	Atg/Gtg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347392	89347392	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1169949888		P-0014276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	312	985	0	ENST00000301030.4:c.5558C>T	p.Pro1853Leu	p.P1853L	ENST00000301030	NM_001256183.1	1853	cCa/cTa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55131127	55131127	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1248275606		P-0014276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	69	579	0	ENST00000257290.5:c.670G>A	p.Val224Met	p.V224M	ENST00000257290	NM_006206.4	224	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	204	807	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589147	67589147	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0014368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	50	210	0	ENST00000274335.5:c.1135A>T	p.Lys379Ter	p.K379*	ENST00000274335		379	Aaa/Taa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591092	67591100	+	inframe_deletion	In_Frame_Del	DEL	GTATGAACA	GTATGAACA	-			P-0014368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	75	300	0	ENST00000274335.5:c.1686_1694del	p.Met563_Ser565del	p.M563_S565del	ENST00000274335		562	cGTATGAACAgc/cgc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487250	56487250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	407	638	0	ENST00000267101.3:c.1396C>A	p.His466Asn	p.H466N	ENST00000267101	NM_001982.3	466	Cac/Aac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061066	38061066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	160	240	0	ENST00000250448.2:c.923C>T	p.Pro308Leu	p.P308L	ENST00000250448	NM_004496.3	308	cCc/cTc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657518	37657520	+	inframe_deletion	In_Frame_Del	DEL	TAT	TAT	-			P-0014467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	488	454	0	ENST00000447079.4:c.2436_2438del	p.Phe813del	p.F813del	ENST00000447079	NM_015083.1	812	gTATtt/gtt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241737	55241737	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0014467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	74	415	0	ENST00000275493.2:c.2184+1G>C		p.X728_splice	ENST00000275493	NM_005228.3	728																																																																																
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0014486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	340	402	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189379	56189379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	332	445	0	ENST00000399503.3:c.4411C>T	p.Pro1471Ser	p.P1471S	ENST00000399503	NM_005921.1	1471	Cca/Tca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	150	390	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610498	10610498	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	165	466	0	ENST00000171111.5:c.212G>T	p.Arg71Leu	p.R71L	ENST00000171111	NM_203500.1	71	cGg/cTg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193172940	193172940	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1244272523		P-0014496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	104	276	1	ENST00000367435.3:c.988C>T	p.Arg330Trp	p.R330W	ENST00000367435	NM_024529.4	330	Cgg/Tgg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472548	88472548	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	147	387	0	ENST00000360948.2:c.2007C>G	p.Tyr669Ter	p.Y669*	ENST00000360948	NM_001012338.2	669	taC/taG																																																																															
BLM	641	MSKCC	GRCh37	15	91328175	91328175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	39	328	0	ENST00000355112.3:c.2687T>C	p.Leu896Pro	p.L896P	ENST00000355112	NM_000057.2	896	cTc/cCc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497370	149497370	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	103	521	0	ENST00000261799.4:c.2948C>G	p.Pro983Arg	p.P983R	ENST00000261799	NM_002609.3	983	cCa/cGa																																																																															
STK11	6794	MSKCC	GRCh37	19	1221923	1221960	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGCTCCTCGCCGGCTTCTCCTCAGGGATGCTTGAGTA	AGGCTCCTCGCCGGCTTCTCCTCAGGGATGCTTGAGTA	CGGCTC			P-0014496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	129	439	0	ENST00000326873.7:c.863-25_875delinsCGGCTC		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																																
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0014506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	161	440	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913399		P-0014506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	137	287	0	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971097	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0014506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	155	397	0	ENST00000304494.5:c.261_262delinsAA	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	87	cgGGag/cgAAag																																																																															
RECQL	5965	MSKCC	GRCh37	12	21636396	21636396	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	116	651	0	ENST00000421138.2:c.614A>G	p.Glu205Gly	p.E205G	ENST00000421138		205	gAg/gGg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166772	32166772	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753820483		P-0014506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	209	606	0	ENST00000375023.3:c.4466G>A	p.Arg1489Gln	p.R1489Q	ENST00000375023	NM_004557.3	1489	cGa/cAa																																																																															
POLE	5426	MSKCC	GRCh37	12	133263850	133263850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	118	276	0	ENST00000320574.5:c.52G>A	p.Glu18Lys	p.E18K	ENST00000320574	NM_006231.2	18	Gag/Aag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65310483	65310483	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs751933525		P-0014583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	125	316	0	ENST00000342505.4:c.2205C>G	p.Ile735Met	p.I735M	ENST00000342505	NM_002227.2	735	atC/atG																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0014583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	416	325	0	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56482374	56482374	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	257	410	0	ENST00000267101.3:c.922G>C	p.Asp308His	p.D308H	ENST00000267101	NM_001982.3	308	Gac/Cac																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805413	46805413	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	70	602	0	ENST00000290295.7:c.543G>C	p.Gln181His	p.Q181H	ENST00000290295	NM_006361.5	181	caG/caC																																																																															
BBC3	27113	MSKCC	GRCh37	19	47725050	47725050	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	306	750	1	ENST00000449228.1:c.694del	p.Thr232ProfsTer58	p.T232Pfs*58	ENST00000449228	NM_001127240.2	232	Acc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	99	945	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226132	2226132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	309	1216	1	ENST00000326181.6:c.1829C>T	p.Thr610Met	p.T610M	ENST00000326181	NM_032271.2	610	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112174058	112174058	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0014596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	37	589	0	ENST00000257430.4:c.2767A>T	p.Arg923Ter	p.R923*	ENST00000257430	NM_000038.5	923	Aga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259061	16259061	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	74	909	0	ENST00000375759.3:c.6326C>A	p.Ala2109Glu	p.A2109E	ENST00000375759	NM_015001.2	2109	gCa/gAa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346357	89346357	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751378641		P-0014596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	53	596	3	ENST00000301030.4:c.6593G>A	p.Arg2198Gln	p.R2198Q	ENST00000301030	NM_001256183.1	2198	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7572927	7572927	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0014596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	112	746	0	ENST00000269305.4:c.1182A>G	p.Ter394TrpextTer9	p.*394Wext*9	ENST00000269305	NM_001126112.2	394	tgA/tgG																																																																															
MLH1	4292	MSKCC	GRCh37	3	37059058	37059058	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	60	1118	0	ENST00000231790.2:c.852G>T	p.Leu284Phe	p.L284F	ENST00000231790	NM_000249.3	284	ttG/ttT																																																																															
APC	324	MSKCC	GRCh37	5	112175628	112175634	+	frameshift_variant	Frame_Shift_Del	DEL	CTCAAAC	CTCAAAC	-			P-0014596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	159	761	0	ENST00000257430.4:c.4338_4344del	p.Gln1447SerfsTer24	p.Q1447Sfs*24	ENST00000257430	NM_000038.5	1446	gCTCAAACc/gc																																																																															
SMO	6608	MSKCC	GRCh37	7	128843306	128843306	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752289293		P-0014596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	93	1328	1	ENST00000249373.3:c.413G>A	p.Arg138Gln	p.R138Q	ENST00000249373	NM_005631.4	138	cGg/cAg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0014597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	170	874	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71102918	71102918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148369068		P-0014597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	32	317	0	ENST00000318789.4:c.289G>A	p.Val97Met	p.V97M	ENST00000318789	NM_032682.5	97	Gtg/Atg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0014701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	325	663	2	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																															
AR	367	MSKCC	GRCh37	X	66937371	66937371	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	410	420	0	ENST00000374690.3:c.2225G>T	p.Trp742Leu	p.W742L	ENST00000374690	NM_000044.3	742	tGg/tTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25991668	25991668	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	302	578	1	ENST00000435504.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000435504		192	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151868369	151868369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	355	691	0	ENST00000262189.6:c.9433G>A	p.Gly3145Arg	p.G3145R	ENST00000262189	NM_170606.2	3145	Gga/Aga																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0014824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	227	446	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139411768	139411768	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201768800		P-0014824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1189	295	892	2	ENST00000277541.6:c.1511G>A	p.Arg504His	p.R504H	ENST00000277541	NM_017617.3	504	cGc/cAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68835596	68835596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587783047		P-0014824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	124	378	0	ENST00000261769.5:c.187C>T	p.Arg63Ter	p.R63*	ENST00000261769	NM_004360.3	63	Cga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111526	8111526	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	65	572	0	ENST00000346208.3:c.1012del	p.Cys338AlafsTer17	p.C338Afs*17	ENST00000346208		338	Tgc/gc																																																																															
CBFB	865	MSKCC	GRCh37	16	67100603	67100603	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	209	394	2	ENST00000412916.2:c.301A>G	p.Met101Val	p.M101V	ENST00000412916		101	Atg/Gtg																																																																															
RB1	5925	MSKCC	GRCh37	13	48954211	48954211	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	198	393	0	ENST00000267163.4:c.1415del	p.Asn472IlefsTer6	p.N472Ifs*6	ENST00000267163	NM_000321.2	471	cAa/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577112	7577112	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1131691029		P-0014844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	508	914	0	ENST00000269305.4:c.826G>C	p.Ala276Pro	p.A276P	ENST00000269305	NM_001126112.2	276	Gcc/Ccc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166475	118166475	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	121	530	0	ENST00000369448.3:c.985A>G	p.Thr329Ala	p.T329A	ENST00000369448	NM_017709.3	329	Act/Gct																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786651	3786651	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0014844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	455	677	0	ENST00000262367.5:c.4560G>T	p.Lys1520Asn	p.K1520N	ENST00000262367	NM_004380.2	1520	aaG/aaT																																																																															
KDR	3791	MSKCC	GRCh37	4	55948196	55948196	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs971421002		P-0014844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	102	711	0	ENST00000263923.4:c.3775G>C	p.Asp1259His	p.D1259H	ENST00000263923	NM_002253.2	1259	Gac/Cac																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99802257	99802257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	61	367	0	ENST00000280892.6:c.636G>C	p.Lys212Asn	p.K212N	ENST00000280892	NM_001130678.1	212	aaG/aaC																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922935	44922935	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	100	392	0	ENST00000377967.4:c.1796C>A	p.Thr599Lys	p.T599K	ENST00000377967	NM_021140.2	599	aCa/aAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591917	48591925	+	inframe_deletion	In_Frame_Del	DEL	TCGCTTTTG	TCGCTTTTG	-			P-0014859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	342	538	0	ENST00000342988.3:c.1081_1089del	p.Arg361_Cys363del	p.R361_C363del	ENST00000342988	NM_005359.5	360	gaTCGCTTTTGt/gat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0014860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	115	419	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936093	178936093	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913275		P-0014860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	90	557	0	ENST00000263967.3:c.1635G>T	p.Glu545Asp	p.E545D	ENST00000263967	NM_006218.2	545	gaG/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882019		P-0014894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	433	1012	0	ENST00000269305.4:c.455dup	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871656	35871656	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	146	370	1	ENST00000216797.5:c.850G>T	p.Glu284Ter	p.E284*	ENST00000216797	NM_020529.2	284	Gag/Tag																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873624	35873624	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0014894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	99	253	0	ENST00000216797.5:c.227C>G	p.Ser76Trp	p.S76W	ENST00000216797	NM_020529.2	76	tCg/tGg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37871746	37871746	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142783371		P-0014894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	825	865	0	ENST00000269571.5:c.1270G>A	p.Val424Ile	p.V424I	ENST00000269571		424	Gtc/Atc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760788	59760788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	188	571	1	ENST00000259008.2:c.3619G>T	p.Asp1207Tyr	p.D1207Y	ENST00000259008	NM_032043.2	1207	Gat/Tat																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950756	38950756	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199854036		P-0014894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	114	326	0	ENST00000357387.3:c.3194A>G	p.Asn1065Ser	p.N1065S	ENST00000357387	NM_152756.3	1065	aAt/aGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	163	615	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71008412	71008412	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368167189		P-0014952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	95	474	1	ENST00000318789.4:c.2020G>A	p.Glu674Lys	p.E674K	ENST00000318789	NM_032682.5	674	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692775	89692775	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	37	563	0	ENST00000371953.3:c.259C>T	p.Gln87Ter	p.Q87*	ENST00000371953	NM_000314.4	87	Caa/Taa																																																																															
CCND1	595	MSKCC	GRCh37	11	69462759	69462759	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0014952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	56	530	0	ENST00000227507.2:c.575-3C>T		p.X192_splice	ENST00000227507	NM_053056.2	192																																																																																
MGA	23269	MSKCC	GRCh37	15	42054015	42054015	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	178	597	0	ENST00000219905.7:c.7478del	p.Asn2493IlefsTer3	p.N2493Ifs*3	ENST00000219905	NM_001164273.1	2493	Aat/at																																																																															
CBFB	865	MSKCC	GRCh37	16	67063317	67063317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	45	350	1	ENST00000412916.2:c.7C>T	p.Arg3Cys	p.R3C	ENST00000412916		3	Cgc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790105	40790105	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	62	705	0	ENST00000373198.4:c.2626G>T	p.Glu876Ter	p.E876*	ENST00000373198	NM_133170.3	876	Gag/Tag																																																																															
ATR	545	MSKCC	GRCh37	3	142281226	142281226	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	88	743	0	ENST00000350721.4:c.1018G>C	p.Asp340His	p.D340H	ENST00000350721	NM_001184.3	340	Gat/Cat																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043992	180043992	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0014952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	64	660	0	ENST00000261937.6:c.3004G>A	p.Glu1002Lys	p.E1002K	ENST00000261937	NM_182925.4	1002	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692896	89692896	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs398123322		P-0014976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	198	521	0	ENST00000371953.3:c.380G>A	p.Gly127Glu	p.G127E	ENST00000371953	NM_000314.4	127	gGa/gAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	278	424	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579533	7579533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	442	919	0	ENST00000269305.4:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000269305	NM_001126112.2	52	Caa/Taa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100943	41100943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	144	545	1	ENST00000373198.4:c.1413G>A	p.Met471Ile	p.M471I	ENST00000373198	NM_133170.3	471	atG/atA																																																																															
SPEN	23013	MSKCC	GRCh37	1	16263725	16263725	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	122	565	0	ENST00000375759.3:c.10094C>G	p.Pro3365Arg	p.P3365R	ENST00000375759	NM_015001.2	3365	cCt/cGt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374795	118374795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	74	432	0	ENST00000534358.1:c.8188G>T	p.Asp2730Tyr	p.D2730Y	ENST00000534358	NM_005933.3	2730	Gat/Tat																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246137	46246137	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	45	471	0	ENST00000334344.6:c.4231C>G	p.Gln1411Glu	p.Q1411E	ENST00000334344	NM_152641.2	1411	Caa/Gaa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131927057	131927059	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0015012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	69	471	0	ENST00000265335.6:c.1600_1602del	p.Thr534del	p.T534del	ENST00000265335		532	ACA/-																																																																															
SMO	6608	MSKCC	GRCh37	7	128829040	128829042	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-	rs772132544		P-0015059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	10	80	1	ENST00000249373.3:c.67_69del	p.Leu23del	p.L23del	ENST00000249373	NM_005631.4	16	ggGCTg/ggg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319965	8319965	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs141403124		P-0015059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	28	164	0	ENST00000356435.5:c.5536G>A	p.Ala1846Thr	p.A1846T	ENST00000356435		1846	Gcg/Acg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	149	539	1	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
NF1	4763	MSKCC	GRCh37	17	29496913	29496913	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	75	198	0	ENST00000358273.4:c.484C>T	p.Gln162Ter	p.Q162*	ENST00000358273	NM_001042492.2	162	Cag/Tag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965664	93965664	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	135	489	0	ENST00000369303.4:c.2264T>C	p.Val755Ala	p.V755A	ENST00000369303	NM_004440.3	755	gTt/gCt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553170	106553170	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748814652		P-0015059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	140	436	0	ENST00000369096.4:c.1135G>A	p.Ala379Thr	p.A379T	ENST00000369096	NM_001198.3	379	Gcg/Acg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0015075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	142	497	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0015075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	130	618	0	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120509114	120509114	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A	rs782183225		P-0015075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	45	345	0	ENST00000256646.2:c.1454-2A>T		p.X485_splice	ENST00000256646	NM_024408.3	485																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9862866	9862866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	142	524	1	ENST00000330684.3:c.2437G>A	p.Asp813Asn	p.D813N	ENST00000330684	NM_001134407.1	813	Gac/Aac																																																																															
RAC2	5880	MSKCC	GRCh37	22	37622750	37622750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1171	71	594	0	ENST00000249071.6:c.542C>T	p.Pro181Leu	p.P181L	ENST00000249071	NM_002872.4	181	cCc/cTc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245075	53245075	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0015075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	81	310	0	ENST00000375401.3:c.865A>T	p.Lys289Ter	p.K289*	ENST00000375401	NM_004187.3	289	Aag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0015084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	222	474	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539018	187539018	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374444088		P-0015084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	116	385	1	ENST00000441802.2:c.8722G>A	p.Val2908Ile	p.V2908I	ENST00000441802	NM_005245.3	2908	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782177		P-0015099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	672	972	0	ENST00000269305.4:c.644G>C	p.Ser215Thr	p.S215T	ENST00000269305	NM_001126112.2	215	aGt/aCt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1316	515	709	1	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653849	89653859	+	frameshift_variant	Frame_Shift_Del	DEL	TATTGATGATG	TATTGATGATG	-			P-0015099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	174	529	0	ENST00000371953.3:c.149_159del	p.Ile50SerfsTer9	p.I50Sfs*9	ENST00000371953	NM_000314.4	49	aaTATTGATGATGta/aata																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437350	110437350	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	161	164	0	ENST00000375856.3:c.1051C>G	p.Pro351Ala	p.P351A	ENST00000375856	NM_003749.2	351	Ccg/Gcg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396959	396959	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1239	335	819	1	ENST00000262320.3:c.67C>A	p.Pro23Thr	p.P23T	ENST00000262320	NM_003502.3	23	Ccc/Acc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16042320	16042320	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0015099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	360	440	0	ENST00000268712.3:c.1352+2T>C		p.X451_splice	ENST00000268712	NM_006311.3	451																																																																																
SOS1	6654	MSKCC	GRCh37	2	39249826	39249826	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	199	602	0	ENST00000402219.2:c.1743C>G	p.Asp581Glu	p.D581E	ENST00000402219	NM_005633.3	581	gaC/gaG																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46587864	46587864	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1402203251		P-0015099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	97	646	0	ENST00000263734.3:c.542G>A	p.Arg181His	p.R181H	ENST00000263734	NM_001430.4	181	cGt/cAt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672836	86672836	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	152	417	0	ENST00000274376.6:c.2323G>C	p.Asp775His	p.D775H	ENST00000274376	NM_002890.2	775	Gac/Cac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953040	2953040	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141751925		P-0015099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	310	967	1	ENST00000396946.4:c.2900G>A	p.Arg967His	p.R967H	ENST00000396946	NM_032415.4	967	cGc/cAc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950061	38950061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000224-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			988	410	400	0	ENST00000357387.3:c.3889C>T	p.Pro1297Ser	p.P1297S	ENST00000357387	NM_152756.3	1297	Cct/Tct																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000224-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			626	205	344	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
ATM	472	MSKCC	GRCh37	11	108099967	108099967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000224-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	189	191	0	ENST00000278616.4:c.248C>T	p.Ser83Leu	p.S83L	ENST00000278616	NM_000051.3	83	tCa/tTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001226-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	42	138	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0001226-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	109	264	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28636086	28636086	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001226-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			575	35	477	0	ENST00000241453.7:c.286G>T	p.Asp96Tyr	p.D96Y	ENST00000241453	NM_004119.2	96	Gac/Tac																																																																															
NF1	4763	MSKCC	GRCh37	17	29586109	29586109	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001226-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1012	288	343	0	ENST00000358273.4:c.4392C>G	p.Phe1464Leu	p.F1464L	ENST00000358273	NM_001042492.2	1464	ttC/ttG																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170774	11170774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001226-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	39	376	0	ENST00000344626.4:c.4822C>T	p.Arg1608Trp	p.R1608W	ENST00000344626	NM_003072.3	1608	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249358	153249358	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0001760-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			237	58	290	0	ENST00000281708.4:c.1418+2T>G		p.X473_splice	ENST00000281708	NM_033632.3	473																																																																																
FLT4	2324	MSKCC	GRCh37	5	180045881	180045881	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001760-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			90	10	347	0	ENST00000261937.6:c.2890G>T	p.Val964Leu	p.V964L	ENST00000261937	NM_182925.4	964	Gtg/Ttg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038526	47038526	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001760-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			177	28	439	0	ENST00000329236.7:c.457C>G	p.Arg153Gly	p.R153G	ENST00000329236	NM_001204466.1	153	Cga/Gga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577587	7577587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001760-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	42	252	0	ENST00000269305.4:c.694del	p.Ile232SerfsTer15	p.I232Sfs*15	ENST00000269305	NM_001126112.2	232	Atc/tc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519968		P-0001884-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			704	175	507	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																															
SDHB	6390	MSKCC	GRCh37	1	17371315	17371315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1060503762		P-0001884-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			691	167	495	0	ENST00000375499.3:c.141G>A	p.Trp47Ter	p.W47*	ENST00000375499	NM_003000.2	47	tgG/tgA																																																																															
AKT3	10000	MSKCC	GRCh37	1	243859016	243859016	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs397514606		P-0001884-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			524	126	313	0	ENST00000263826.5:c.49G>A	p.Glu17Lys	p.E17K	ENST00000263826	NM_005465.4	17	Gaa/Aaa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163373	47163373	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0001884-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			717	121	454	0	ENST00000409792.3:c.2753C>G	p.Ser918Ter	p.S918*	ENST00000409792	NM_014159.6	918	tCa/tGa																																																																															
HGF	3082	MSKCC	GRCh37	7	81339499	81339499	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001884-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1101	183	646	0	ENST00000222390.5:c.1505G>C	p.Arg502Pro	p.R502P	ENST00000222390	NM_000601.4	502	cGa/cCa																																																																															
CIC	23152	MSKCC	GRCh37	19	42796909	42796909	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001884-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			482	107	457	0	ENST00000575354.2:c.3367G>C	p.Ala1123Pro	p.A1123P	ENST00000575354	NM_015125.3	1123	Gcc/Ccc																																																																															
AR	367	MSKCC	GRCh37	X	66943591	66943591	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001884-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	2434	330	0	ENST00000374690.3:c.2671G>T	p.Asp891Tyr	p.D891Y	ENST00000374690	NM_000044.3	891	Gac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112175806	112175806	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001884-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	127	357	0	ENST00000257430.4:c.4516del	p.Leu1506Ter	p.L1506*	ENST00000257430	NM_000038.5	1505	agC/ag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			301	93	188	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579580	7579580	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			382	185	372	0	ENST00000269305.4:c.107del	p.Pro36ArgfsTer8	p.P36Rfs*8	ENST00000269305	NM_001126112.2	36	cCg/cg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209108272	209108272	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			851	231	528	0	ENST00000345146.2:c.577G>T	p.Ala193Ser	p.A193S	ENST00000345146	NM_005896.2	193	Gca/Tca																																																																															
CUL3	8452	MSKCC	GRCh37	2	225360671	225360671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			783	161	495	0	ENST00000264414.4:c.1720G>A	p.Glu574Lys	p.E574K	ENST00000264414	NM_003590.4	574	Gaa/Aaa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445029	89445029	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1201275406		P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			831	200	557	0	ENST00000336596.2:c.1349G>A	p.Arg450Lys	p.R450K	ENST00000336596	NM_005233.5	450	aGa/aAa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445035	89445035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			857	204	549	0	ENST00000336596.2:c.1355G>T	p.Ser452Ile	p.S452I	ENST00000336596	NM_005233.5	452	aGc/aTc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38963047	38963047	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			849	155	566	0	ENST00000357387.3:c.1497G>T	p.Gln499His	p.Q499H	ENST00000357387	NM_152756.3	499	caG/caT																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751895	57751895	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs749968952		P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			558	204	616	0	ENST00000274289.3:c.1342A>G	p.Ile448Val	p.I448V	ENST00000274289	NM_006622.3	448	Ata/Gta																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721436	176721436	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780750393		P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			463	202	439	1	ENST00000439151.2:c.7067C>T	p.Thr2356Met	p.T2356M	ENST00000439151	NM_022455.4	2356	aCg/aTg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188419	32188419	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			472	118	302	0	ENST00000375023.3:c.923-1G>T		p.X308_splice	ENST00000375023	NM_004557.3	308																																																																																
SOX17	64321	MSKCC	GRCh37	8	55370711	55370711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			445	63	186	0	ENST00000297316.4:c.13G>A	p.Asp5Asn	p.D5N	ENST00000297316	NM_022454.3	5	Gat/Aat																																																																															
TET1	80312	MSKCC	GRCh37	10	70333158	70333158	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			510	333	633	0	ENST00000373644.4:c.1063C>T	p.Gln355Ter	p.Q355*	ENST00000373644	NM_030625.2	355	Caa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108216494	108216494	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			889	121	547	0	ENST00000278616.4:c.8443G>C	p.Glu2815Gln	p.E2815Q	ENST00000278616	NM_000051.3	2815	Gag/Cag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344997	118344997	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			831	105	377	0	ENST00000534358.1:c.3123G>C	p.Lys1041Asn	p.K1041N	ENST00000534358	NM_005933.3	1041	aaG/aaC																																																																															
CDK8	1024	MSKCC	GRCh37	13	26828827	26828827	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			514	132	350	0	ENST00000381527.3:c.49G>T	p.Glu17Ter	p.E17*	ENST00000381527	NM_001260.1	17	Gag/Tag																																																																															
CDK8	1024	MSKCC	GRCh37	13	26911769	26911769	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			514	90	391	0	ENST00000381527.3:c.194G>C	p.Arg65Thr	p.R65T	ENST00000381527	NM_001260.1	65	aGa/aCa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81528560	81528560	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			558	97	485	0	ENST00000298171.2:c.239G>C	p.Arg80Thr	p.R80T	ENST00000298171	NM_000369.2	80	aGa/aCa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779159	3779159	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			353	193	267	0	ENST00000262367.5:c.5889G>T	p.Glu1963Asp	p.E1963D	ENST00000262367	NM_004380.2	1963	gaG/gaT																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641458	23641458	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			792	174	680	0	ENST00000261584.4:c.2017G>C	p.Glu673Gln	p.E673Q	ENST00000261584	NM_024675.3	673	Gag/Cag																																																																															
CBFB	865	MSKCC	GRCh37	16	67116194	67116194	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			703	148	481	0	ENST00000412916.2:c.478C>G	p.His160Asp	p.H160D	ENST00000412916		160	Cat/Gat																																																																															
FANCA	2175	MSKCC	GRCh37	16	89869707	89869707	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			861	217	627	0	ENST00000389301.3:c.752C>G	p.Ser251Ter	p.S251*	ENST00000389301	NM_000135.2	251	tCa/tGa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16001811	16001811	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	140	358	0	ENST00000268712.3:c.2691-1G>A		p.X897_splice	ENST00000268712	NM_006311.3	897																																																																																
CDK12	51755	MSKCC	GRCh37	17	37682491	37682491	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			785	119	440	0	ENST00000447079.4:c.3682G>C	p.Glu1228Gln	p.E1228Q	ENST00000447079	NM_015083.1	1228	Gag/Cag																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59770816	59770816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			909	154	573	0	ENST00000259008.2:c.2550G>C	p.Arg850Ser	p.R850S	ENST00000259008	NM_032043.2	850	agG/agC																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78765248	78765248	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			785	236	375	0	ENST00000306801.3:c.831-2A>T		p.X277_splice	ENST00000306801	NM_020761.2	277																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10600381	10600381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	230	526	0	ENST00000171111.5:c.1474C>T	p.Pro492Ser	p.P492S	ENST00000171111	NM_203500.1	492	Cca/Tca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15297772	15297772	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			537	235	433	0	ENST00000263388.2:c.1868A>G	p.Asp623Gly	p.D623G	ENST00000263388	NM_000435.2	623	gAc/gGc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39742733	39742733	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			777	282	505	0	ENST00000361337.2:c.1576G>C	p.Glu526Gln	p.E526Q	ENST00000361337	NM_003286.2	526	Gag/Cag																																																																															
EP300	2033	MSKCC	GRCh37	22	41564754	41564754	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748959061		P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			702	170	592	0	ENST00000263253.7:c.4055C>T	p.Ser1352Phe	p.S1352F	ENST00000263253	NM_001429.3	1352	tCc/tTc																																																																															
EP300	2033	MSKCC	GRCh37	22	41564818	41564818	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			629	150	517	0	ENST00000263253.7:c.4119C>G	p.Phe1373Leu	p.F1373L	ENST00000263253	NM_001429.3	1373	ttC/ttG																																																																															
EP300	2033	MSKCC	GRCh37	22	41574245	41574245	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1316927373		P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			708	153	454	0	ENST00000263253.7:c.6530C>T	p.Ser2177Leu	p.S2177L	ENST00000263253	NM_001429.3	2177	tCa/tTa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720640	89720665	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTTTTTTAGGACAAAATGTTTCAC	TTTTTTTTTAGGACAAAATGTTTCAC	-			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			166	95	139	0	ENST00000371953.3:c.802-7_820del		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																																
NTRK3	4916	MSKCC	GRCh37	15	88472569	88472570	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	181	517	0	ENST00000360948.2:c.1985_1986delinsTT	p.Gln662Leu	p.Q662L	ENST00000360948	NM_001012338.2	662	cAG/cTT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389348	8389348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002382-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			763	144	381	0	ENST00000356435.5:c.4270G>T	p.Ala1424Ser	p.A1424S	ENST00000356435		1424	Gcc/Tcc																																																																															
CDH1	999	MSKCC	GRCh37	16	68844185	68844185	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002382-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			764	57	410	0	ENST00000261769.5:c.773A>G	p.Asn258Ser	p.N258S	ENST00000261769	NM_004360.3	258	aAc/aGc																																																																															
RARA	5914	MSKCC	GRCh37	17	38487582	38487582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002382-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			570	345	400	0	ENST00000254066.5:c.112C>T	p.Pro38Ser	p.P38S	ENST00000254066	NM_000964.3	38	Cca/Tca																																																																															
BRCA1	672	MSKCC	GRCh37	17	41256974	41256974	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs80358146		P-0002382-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			670	38	297	0	ENST00000357654.3:c.213-1G>A		p.X71_splice	ENST00000357654	NM_007294.3	71																																																																																
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782144		P-0003511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	98	325	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc																																																																															
TET2	54790	MSKCC	GRCh37	4	106164812	106164812	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	35	353	0	ENST00000380013.4:c.3680T>C	p.Val1227Ala	p.V1227A	ENST00000380013	NM_001127208.2	1227	gTg/gCg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26923210	26923210	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	G			P-0003511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	175	406	0	ENST00000381527.3:c.206T>G	p.Leu69Ter	p.L69*	ENST00000381527	NM_001260.1	69	tTa/tGa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61720050	61720050	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0003519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	60	274	0	ENST00000401558.2:c.1384G>T	p.Val462Phe	p.V462F	ENST00000401558	NM_003400.3	462	Gtt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577524	7577524	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	41	276	0	ENST00000269305.4:c.757A>G	p.Thr253Ala	p.T253A	ENST00000269305	NM_001126112.2	253	Acc/Gcc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	159	409	2	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	125	327	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	100	250	1	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274172	10274173	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	95	306	0	ENST00000330684.3:c.96dup	p.Ala33ArgfsTer105	p.A33Rfs*105	ENST00000330684	NM_001134407.1	32	-/C																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175958550	175958550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1419838517		P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	43	493	0	ENST00000367669.3:c.1795C>T	p.Arg599Cys	p.R599C	ENST00000367669	NM_022457.5	599	Cgt/Tgt																																																																															
RB1	5925	MSKCC	GRCh37	13	49027168	49027168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913305		P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	168	487	0	ENST00000267163.4:c.1735C>T	p.Arg579Ter	p.R579*	ENST00000267163	NM_000321.2	579	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	194	417	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630472	47630472	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs63750615		P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	143	368	0	ENST00000233146.2:c.142G>T	p.Glu48Ter	p.E48*	ENST00000233146	NM_000251.2	48	Gag/Tag																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026203	48026203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782651		P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	162	338	1	ENST00000234420.5:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000234420	NM_000179.2	361	Cgc/Tgc																																																																															
TP63	8626	MSKCC	GRCh37	3	189587130	189587130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	138	394	0	ENST00000264731.3:c.1147C>T	p.His383Tyr	p.H383Y	ENST00000264731	NM_003722.4	383	Cat/Tat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539924	187539924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765909046		P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	177	388	0	ENST00000441802.2:c.7816G>A	p.Gly2606Arg	p.G2606R	ENST00000441802	NM_005245.3	2606	Ggg/Agg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151902290	151902290	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1301632462		P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	38	116	0	ENST00000262189.6:c.3862C>T	p.Arg1288Trp	p.R1288W	ENST00000262189	NM_170606.2	1288	Cgg/Tgg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852251	63852251	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137983907		P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	148	353	0	ENST00000279873.7:c.3029G>A	p.Arg1010Gln	p.R1010Q	ENST00000279873	NM_032199.2	1010	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911639	114911639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	174	392	0	ENST00000543371.1:c.1157G>A	p.Arg386Gln	p.R386Q	ENST00000543371	NM_001198531.1	386	cGg/cAg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67201702	67201702	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373702089		P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	153	424	0	ENST00000312629.5:c.1003G>A	p.Asp335Asn	p.D335N	ENST00000312629	NM_003952.2	335	Gac/Aac																																																																															
ETV6	2120	MSKCC	GRCh37	12	11905490	11905490	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745855585		P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	80	208	0	ENST00000396373.4:c.140C>T	p.Ser47Leu	p.S47L	ENST00000396373	NM_001987.4	47	tCg/tTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433066	49433066	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772742966		P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	180	443	0	ENST00000301067.7:c.8305G>A	p.Asp2769Asn	p.D2769N	ENST00000301067	NM_003482.3	2769	Gat/Aat																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865573	57865573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	213	618	1	ENST00000228682.2:c.3050G>A	p.Gly1017Asp	p.G1017D	ENST00000228682	NM_005269.2	1017	gGc/gAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	341230	341230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756690670		P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	182	455	0	ENST00000262320.3:c.2254G>A	p.Val752Met	p.V752M	ENST00000262320	NM_003502.3	752	Gtg/Atg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944214	81944214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	183	629	0	ENST00000359376.3:c.1823G>A	p.Ser608Asn	p.S608N	ENST00000359376	NM_002661.3	608	aGc/aAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120179	70120179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	97	237	0	ENST00000245479.2:c.1181G>A	p.Arg394Gln	p.R394Q	ENST00000245479	NM_000346.3	394	cGa/cAa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223131	5223131	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375155482		P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	137	455	0	ENST00000357368.4:c.2672C>T	p.Thr891Met	p.T891M	ENST00000357368	NM_002850.3	891	aCg/aTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5265138	5265138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	177	453	1	ENST00000357368.4:c.449G>T	p.Arg150Leu	p.R150L	ENST00000357368	NM_002850.3	150	cGg/cTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410223	63410223	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	309	251	0	ENST00000330258.3:c.2944A>G	p.Arg982Gly	p.R982G	ENST00000330258	NM_152424.3	982	Agg/Ggg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637918	176637920	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	152	332	0	ENST00000439151.2:c.2520_2522del	p.Asn841del	p.N841del	ENST00000439151	NM_022455.4	840	AAC/-																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591122	67591130	+	inframe_deletion	In_Frame_Del	DEL	AGCTGAGAA	AGCTGAGAA	-			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	89	249	0	ENST00000274335.5:c.1717_1725del	p.Leu573_Lys575del	p.L573_K575del	ENST00000274335		572	cAGCTGAGAAag/cag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71101751	71101751	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	120	313	0	ENST00000318789.4:c.447del	p.Lys149AsnfsTer57	p.K149Nfs*57	ENST00000318789	NM_032682.5	149	aaA/aa																																																																															
POLE	5426	MSKCC	GRCh37	12	133208958	133208958	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	126	407	1	ENST00000320574.5:c.6273del	p.Gly2092ValfsTer31	p.G2092Vfs*31	ENST00000320574	NM_006231.2	2091	ccC/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428410	49428411	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1284500089		P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	138	421	0	ENST00000301067.7:c.10394dup	p.Pro3466ThrfsTer2	p.P3466Tfs*2	ENST00000301067	NM_003482.3	3465	gga/ggGa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0003722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	180	398	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057520005		P-0003722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	268	575	1	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400777	72400777	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	130	543	1	ENST00000357731.5:c.394C>A	p.His132Asn	p.H132N	ENST00000357731	NM_173808.2	132	Cat/Aat																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67569259	67569259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	60	254	0	ENST00000274335.5:c.376G>T	p.Asp126Tyr	p.D126Y	ENST00000274335		126	Gac/Tac																																																																															
PAK1	5058	MSKCC	GRCh37	11	77043873	77043873	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	161	570	0	ENST00000356341.3:c.1453C>T	p.Gln485Ter	p.Q485*	ENST00000356341	NM_002576.4	485	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444978	49444978	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1286510393		P-0003722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	19	81	0	ENST00000301067.7:c.2488G>A	p.Glu830Lys	p.E830K	ENST00000301067	NM_003482.3	830	Gaa/Aaa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23649396	23649396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	99	400	0	ENST00000261584.4:c.103C>T	p.Leu35Phe	p.L35F	ENST00000261584	NM_024675.3	35	Ctt/Ttt																																																																															
NF1	4763	MSKCC	GRCh37	17	29664598	29664598	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0003722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	215	243	0	ENST00000358273.4:c.6640G>T	p.Glu2214Ter	p.E2214*	ENST00000358273	NM_001042492.2	2214	Gag/Tag																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40371810	40371810	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	181	321	0	ENST00000293328.3:c.601G>T	p.Glu201Ter	p.E201*	ENST00000293328	NM_012448.3	201	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610123	10610123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	240	471	0	ENST00000171111.5:c.587G>T	p.Cys196Phe	p.C196F	ENST00000171111	NM_203500.1	196	tGt/tTt																																																																															
ATRX	546	MSKCC	GRCh37	X	76812936	76812936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	92	375	0	ENST00000373344.5:c.6685C>T	p.Pro2229Ser	p.P2229S	ENST00000373344	NM_000489.3	2229	Ccc/Tcc																																																																															
ATRX	546	MSKCC	GRCh37	X	76907627	76907627	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	120	530	0	ENST00000373344.5:c.4534C>A	p.Arg1512Ser	p.R1512S	ENST00000373344	NM_000489.3	1512	Cgt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0003725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	178	216	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0003725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	279	420	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0003725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	219	396	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851684	134851684	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373293977		P-0003725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	109	352	0	ENST00000398015.3:c.1090C>T	p.Arg364Trp	p.R364W	ENST00000398015	NM_004441.4	364	Cgg/Tgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629336	187629336	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	272	449	0	ENST00000441802.2:c.1646G>T	p.Arg549Leu	p.R549L	ENST00000441802	NM_005245.3	549	cGg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112175630	112175631	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	127	521	0	ENST00000257430.4:c.4342dup	p.Thr1448AsnfsTer7	p.T1448Nfs*7	ENST00000257430	NM_000038.5	1447	caa/cAaa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411615	63411615	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	255	322	0	ENST00000330258.3:c.1552del	p.Ser518LeufsTer23	p.S518Lfs*23	ENST00000330258	NM_152424.3	518	Tct/ct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0004539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	28	444	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
ATM	472	MSKCC	GRCh37	11	108200963	108200963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	112	376	0	ENST00000278616.4:c.7330G>A	p.Glu2444Lys	p.E2444K	ENST00000278616	NM_000051.3	2444	Gag/Aag																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838432	156838432	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55909005		P-0004539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	138	278	0	ENST00000524377.1:c.710C>T	p.Thr237Met	p.T237M	ENST00000524377	NM_002529.3	237	aCg/aTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202123079	202123079	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	91	243	0	ENST00000358485.4:c.125C>A	p.Ala42Glu	p.A42E	ENST00000358485	NM_001080125.1	42	gCg/gAg																																																																															
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137852581		P-0004704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	229	262	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																															
PMS1	5378	MSKCC	GRCh37	2	190670454	190670454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	200	457	0	ENST00000441310.2:c.392C>T	p.Ser131Phe	p.S131F	ENST00000441310	NM_000534.4	131	tCt/tTt																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872477	35872477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	165	500	0	ENST00000216797.5:c.426del	p.Arg143GlufsTer21	p.R143Efs*21	ENST00000216797	NM_020529.2	142	ttT/tt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620611	52620611	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	181	355	0	ENST00000394830.3:c.3142del	p.Ile1048LeufsTer86	p.I1048Lfs*86	ENST00000394830	NM_018313.4	1048	Att/tt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0004759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	194	358	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604682	48604684	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0004759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	336	402	0	ENST00000342988.3:c.1505_1507del	p.Arg502del	p.R502del	ENST00000342988	NM_005359.5	502	AGG/-																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	129	396	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0004850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	366	476	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792755	33792757	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs781757114		P-0004850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	18	60	0	ENST00000498907.2:c.564_566del	p.Pro189del	p.P189del	ENST00000498907	NM_004364.3	188	ccGCCc/ccc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162050	47162050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	297	402	0	ENST00000409792.3:c.4076C>T	p.Ser1359Phe	p.S1359F	ENST00000409792	NM_014159.6	1359	tCc/tTc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163124	47163124	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs200816574		P-0004850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	306	407	0	ENST00000409792.3:c.3002C>G	p.Ser1001Cys	p.S1001C	ENST00000409792	NM_014159.6	1001	tCt/tGt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138403476	138403476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	360	431	0	ENST00000289153.2:c.2306C>T	p.Ser769Leu	p.S769L	ENST00000289153	NM_006219.2	769	tCa/tTa																																																																															
ATR	545	MSKCC	GRCh37	3	142176521	142176521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	405	465	0	ENST00000350721.4:c.7580G>A	p.Gly2527Glu	p.G2527E	ENST00000350721	NM_001184.3	2527	gGa/gAa																																																																															
PAK1	5058	MSKCC	GRCh37	11	77085411	77085411	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3044	300	460	0	ENST00000356341.3:c.440-1G>A		p.X147_splice	ENST00000356341	NM_002576.4	147																																																																																
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0004889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	429	739	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120483305	120483305	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	60	689	0	ENST00000256646.2:c.3056G>C	p.Gly1019Ala	p.G1019A	ENST00000256646	NM_024408.3	1019	gGa/gCa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166770	32166770	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs947409717		P-0004889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	44	704	0	ENST00000375023.3:c.4468C>T	p.Arg1490Trp	p.R1490W	ENST00000375023	NM_004557.3	1490	Cgg/Tgg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500582	99500582	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	151	567	0	ENST00000268035.6:c.4015A>T	p.Ser1339Cys	p.S1339C	ENST00000268035	NM_000875.3	1339	Agc/Tgc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277247	41277253	+	frameshift_variant	Frame_Shift_Del	DEL	TTGTACC	TTGTACC	-			P-0004889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	104	529	0	ENST00000349496.5:c.1716_1722del	p.Cys573GlufsTer6	p.C573Efs*6	ENST00000349496	NM_001904.3	572	ggTTGTACC/gg																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913233		P-0004892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	291	482	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463208	25463208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	161	493	0	ENST00000264709.3:c.2285G>A	p.Gly762Asp	p.G762D	ENST00000264709	NM_175629.2	762	gGc/gAc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747918	41747918	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	90	416	0	ENST00000226382.2:c.851C>A	p.Pro284Gln	p.P284Q	ENST00000226382	NM_003924.3	284	cCg/cAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540322	187540322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	96	503	0	ENST00000441802.2:c.7418G>A	p.Arg2473Lys	p.R2473K	ENST00000441802	NM_005245.3	2473	aGa/aAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879016	151879016	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	257	489	0	ENST00000262189.6:c.5929C>A	p.Gln1977Lys	p.Q1977K	ENST00000262189	NM_170606.2	1977	Caa/Aaa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135798735	135798735	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	166	364	0	ENST00000298552.3:c.508G>T	p.Gly170Cys	p.G170C	ENST00000298552	NM_001162426.1	170	Ggc/Tgc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95590765	95590765	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs886037667		P-0004892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	69	524	0	ENST00000343455.3:c.1144G>A	p.Glu382Lys	p.E382K	ENST00000343455	NM_177438.2	382	Gaa/Aaa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10247836	10247836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	267	656	0	ENST00000340748.4:c.4366C>T	p.Arg1456Trp	p.R1456W	ENST00000340748		1456	Cgg/Tgg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272230	15272230	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763603215		P-0004892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	152	290	0	ENST00000263388.2:c.6209C>T	p.Ala2070Val	p.A2070V	ENST00000263388	NM_000435.2	2070	gCg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878994	151878995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	240	490	0	ENST00000262189.6:c.5950dup	p.Leu1984ProfsTer22	p.L1984Pfs*22	ENST00000262189	NM_170606.2	1984	cta/cCta																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542238	187542244	+	frameshift_variant	Frame_Shift_Del	DEL	ACTTAGT	ACTTAGT	-			P-0004892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	117	587	0	ENST00000441802.2:c.5496_5502del	p.Leu1833TrpfsTer31	p.L1833Wfs*31	ENST00000441802	NM_005245.3	1832	gtACTAAGT/gt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120506374	120506378	+	frameshift_variant	Frame_Shift_Del	DEL	GGCAA	GGCAA	-			P-0004892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	235	517	0	ENST00000256646.2:c.1734_1738del	p.Cys579ProfsTer9	p.C579Pfs*9	ENST00000256646	NM_024408.3	578	ccTTGCCac/ccac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs760043106		P-0004912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	123	335	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278049	18278049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	78	373	0	ENST00000222254.8:c.1669G>A	p.Asp557Asn	p.D557N	ENST00000222254	NM_005027.3	557	Gac/Aac																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115914	8115915	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	96	226	0	ENST00000346208.3:c.1262dup	p.Met422AspfsTer85	p.M422Dfs*85	ENST00000346208		420	-/C																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	77	300	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100304	8100304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	139	290	0	ENST00000346208.3:c.278C>T	p.Ser93Phe	p.S93F	ENST00000346208		93	tCc/tTc																																																																															
MST1	4485	MSKCC	GRCh37	3	49725275	49725279	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCT	GTGCT	-	rs756341442		P-0004918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	13	144	15	ENST00000449682.2:c.146_150del	p.Gln49ProfsTer18	p.Q49Pfs*18	ENST00000449682	NM_020998.3	49	cAGCAC/c																																																																															
SDHB	6390	MSKCC	GRCh37	1	17359566	17359566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	24	303	0	ENST00000375499.3:c.275C>T	p.Ser92Leu	p.S92L	ENST00000375499	NM_003000.2	92	tCa/tTa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117443	115117444	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	AGTTCATATAT			P-0004918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	109	234	0	ENST00000257566.3:c.730_731insATATATGAACT	p.Ser244TyrfsTer3	p.S244Yfs*3	ENST00000257566	NM_016569.3	244	tcc/tATATATGAACTcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579348	7579350	+	missense_variant	Missense_Mutation	ONP	GAA	GAA	AGG			P-0004918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	18	294	0	ENST00000269305.4:c.337_339delinsCCT	p.Phe113Pro	p.F113P	ENST00000269305	NM_001126112.2	113	TTC/CCT																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	146	329	0	ENST00000346208.3:c.990dup	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100913	27100913	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	148	251	0	ENST00000324856.7:c.4195C>T	p.Gln1399Ter	p.Q1399*	ENST00000324856	NM_006015.4	1399	Cag/Tag																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799727	72799727	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs767180976		P-0004981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	222	269	0	ENST00000325599.8:c.1442A>G	p.Lys481Arg	p.K481R	ENST00000325599	NM_018130.2	481	aAa/aGa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023046	27023047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCAT			P-0004981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	24	32	0	ENST00000324856.7:c.156_157insTGGCA	p.Ala53TrpfsTer50	p.A53Wfs*50	ENST00000324856	NM_006015.4	51	aag/aaGGCATg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	23	268	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131927613	131927613	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs786203901		P-0004999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	21	232	0	ENST00000265335.6:c.1680T>G	p.Ser560Arg	p.S560R	ENST00000265335		560	agT/agG																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864467	162864467	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	38	274	1	ENST00000366898.1:c.46G>T	p.Glu16Ter	p.E16*	ENST00000366898	NM_004562.2	16	Gag/Tag																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763390	59763390	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3786	238	323	0	ENST00000259008.2:c.2712C>A	p.Asp904Glu	p.D904E	ENST00000259008	NM_032043.2	904	gaC/gaA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0005034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2278	446	531	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0005034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	2256	581	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0005034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	503	668	0	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																															
RAF1	5894	MSKCC	GRCh37	3	12653551	12653551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140884322		P-0005034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	105	544	0	ENST00000251849.4:c.218G>A	p.Arg73Gln	p.R73Q	ENST00000251849	NM_002880.3	73	cGa/cAa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371684	55371684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	192	461	0	ENST00000297316.4:c.374G>A	p.Arg125His	p.R125H	ENST00000297316	NM_022454.3	125	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830292	72830292	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	99	660	0	ENST00000268489.5:c.6289T>G	p.Phe2097Val	p.F2097V	ENST00000268489	NM_006885.3	2097	Ttc/Gtc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943709	9943709	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	142	554	1	ENST00000330684.3:c.1232T>C	p.Leu411Pro	p.L411P	ENST00000330684	NM_001134407.1	411	cTg/cCg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81990337	81990337	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	140	861	0	ENST00000359376.3:c.3608T>C	p.Leu1203Pro	p.L1203P	ENST00000359376	NM_002661.3	1203	cTg/cCg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45873792	45873792	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0005047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	233	458	1	ENST00000391945.4:c.5+2T>A		p.X2_splice	ENST00000391945	NM_000400.3	2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578503	7578507	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGG	CAGGG	-			P-0005047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	282	796	0	ENST00000269305.4:c.423_427del	p.Pro142AlafsTer5	p.P142Afs*5	ENST00000269305	NM_001126112.2	141	tgCCCTGtg/tgtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0005065-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			93	299	534	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518464	204518464	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777416962		P-0005065-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			567	34	429	0	ENST00000367182.3:c.1127C>T	p.Ala376Val	p.A376V	ENST00000367182	NM_001278516.1	376	gCg/gTg																																																																															
RHOA	387	MSKCC	GRCh37	3	49405948	49405948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005065-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			407	83	526	0	ENST00000418115.1:c.190G>A	p.Glu64Lys	p.E64K	ENST00000418115	NM_001664.2	64	Gaa/Aaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244137	153244137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005065-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			202	15	448	0	ENST00000281708.4:c.2020C>T	p.Arg674Trp	p.R674W	ENST00000281708	NM_033632.3	674	Cgg/Tgg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589001	67589001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005065-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			185	13	326	0	ENST00000274335.5:c.1092G>A	p.Met364Ile	p.M364I	ENST00000274335		364	atG/atA																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907116	101907116	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005065-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			377	30	464	0	ENST00000374994.4:c.1076A>G	p.Asp359Gly	p.D359G	ENST00000374994	NM_004612.2	359	gAt/gGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	975	528	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0005220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	735	693	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0005220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	328	295	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27094477	27094477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	164	299	0	ENST00000324856.7:c.3185G>A	p.Gly1062Asp	p.G1062D	ENST00000324856	NM_006015.4	1062	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927457	178927457	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	990	508	4	ENST00000263967.3:c.1220G>T	p.Cys407Phe	p.C407F	ENST00000263967	NM_006218.2	407	tGc/tTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878748	151878748	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778498		P-0005220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	1599	427	1	ENST00000262189.6:c.6197G>A	p.Arg2066Gln	p.R2066Q	ENST00000262189	NM_170606.2	2066	cGa/cAa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15938210	15938210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	293	671	2	ENST00000268712.3:c.7004C>A	p.Ser2335Tyr	p.S2335Y	ENST00000268712	NM_006311.3	2335	tCt/tAt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115623	8115708	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCTTGGTGTGCGAGAGCCTGTGCATTTCAGAGGCAGCAAAAAAGTAAAAAAAAAAAAAAAAAATTGATCTTTGTTTAGATTAACA	TTCTTGGTGTGCGAGAGCCTGTGCATTTCAGAGGCAGCAAAAAAGTAAAAAAAAAAAAAAAAAATTGATCTTTGTTTAGATTAACA	-			P-0005220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	228	105	2	ENST00000346208.3:c.1048-79_1054del		p.X350_splice	ENST00000346208		350																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	258	491	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	84	309	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112174490	112174493	+	frameshift_variant	Frame_Shift_Del	DEL	CAAT	CAAT	-	rs1267727476		P-0005307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	127	548	0	ENST00000257430.4:c.3202_3205del	p.Ser1068GlyfsTer57	p.S1068Gfs*57	ENST00000257430	NM_000038.5	1067	CAATca/ca																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270593	98270595	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs756897237		P-0005307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	12	30	0	ENST00000331920.6:c.49_51del	p.Gly17del	p.G17del	ENST00000331920	NM_000264.3	17	GGC/-																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	155	473	0	ENST00000342988.3:c.1255G>T	p.Gly419Trp	p.G419W	ENST00000342988	NM_005359.5	419	Ggg/Tgg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729271	41729271	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749989847		P-0005307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1567	236	956	1	ENST00000242208.4:c.1258G>A	p.Val420Met	p.V420M	ENST00000242208	NM_002192.2	420	Gtg/Atg																																																																															
MED12	9968	MSKCC	GRCh37	X	70339223	70339223	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0005307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2177	199	860	0	ENST00000374080.3:c.100G>T	p.Asp34Tyr	p.D34Y	ENST00000374080		34	Gat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	92	420	0	ENST00000257430.4:c.4473dup	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579399	7579401	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs878854068		P-0005307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	48	489	0	ENST00000269305.4:c.286_288del	p.Ser96del	p.S96del	ENST00000269305	NM_001126112.2	96	TCT/-																																																																															
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs864622007		P-0005428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	35	282	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108114816	108114816	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	132	336	0	ENST00000278616.4:c.633C>A	p.Asp211Glu	p.D211E	ENST00000278616	NM_000051.3	211	gaC/gaA																																																																															
AR	367	MSKCC	GRCh37	X	66943551	66943551	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	193	294	0	ENST00000374690.3:c.2631C>G	p.Phe877Leu	p.F877L	ENST00000374690	NM_000044.3	877	ttC/ttG																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592049	67592050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0005428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	203	436	0	ENST00000274335.5:c.1866_1867insGG	p.Thr623GlyfsTer40	p.T623Gfs*40	ENST00000274335		622	aag/aaGGg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056465	26056466	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0005428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	92	147	0	ENST00000343677.2:c.191_192del	p.Lys64SerfsTer8	p.K64Sfs*8	ENST00000343677	NM_005319.3	64	aAA/a																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061223	38061228	+	inframe_deletion	In_Frame_Del	DEL	TCTCGA	TCTCGA	-			P-0005535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	665	409	1	ENST00000250448.2:c.761_766del	p.Phe254_Asn256delinsTyr	p.F254_N256delinsY	ENST00000250448	NM_004496.3	254	tTCGAGAac/tac																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2609	734	977	3	ENST00000244661.2:c.316G>A	p.Glu106Lys	p.E106K	ENST00000244661	NM_003537.3	106	Gag/Aag																																																																															
RAD50	10111	MSKCC	GRCh37	5	131951789	131951789	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	64	551	0	ENST00000265335.6:c.3131A>C	p.Glu1044Ala	p.E1044A	ENST00000265335		1044	gAa/gCa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871066	12871066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	470	342	0	ENST00000228872.4:c.293C>T	p.Ala98Val	p.A98V	ENST00000228872	NM_004064.3	98	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579448	7579464	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGCTGCTGGTGCAGG	GGAGCTGCTGGTGCAGG	-			P-0005535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	256	543	0	ENST00000269305.4:c.223_239del	p.Pro75TyrfsTer68	p.P75Yfs*68	ENST00000269305	NM_001126112.2	75	CCTGCACCAGCAGCTCCt/t																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871053	12871053	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	466	356	0	ENST00000228872.4:c.285del	p.Gly97ValfsTer22	p.G97Vfs*22	ENST00000228872	NM_004064.3	94	Ccc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0005567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	99	429	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934573		P-0005567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	109	460	0	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911502	134911502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	113	377	0	ENST00000398015.3:c.1967G>T	p.Gly656Val	p.G656V	ENST00000398015	NM_004441.4	656	gGg/gTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106157041	106157041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	127	514	2	ENST00000380013.4:c.1942G>T	p.Asp648Tyr	p.D648Y	ENST00000380013	NM_001127208.2	648	Gac/Tac																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80412539	80412539	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	82	382	1	ENST00000286548.4:c.502G>T	p.Ala168Ser	p.A168S	ENST00000286548	NM_002072.3	168	Gct/Tct																																																																															
RET	5979	MSKCC	GRCh37	10	43606748	43606748	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	70	479	0	ENST00000355710.3:c.1357G>T	p.Gly453Trp	p.G453W	ENST00000355710	NM_020975.4	453	Ggg/Tgg																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514194	69514194	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	94	608	0	ENST00000294312.3:c.487T>G	p.Ser163Ala	p.S163A	ENST00000294312	NM_005117.2	163	Tct/Gct																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244764	46244764	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	48	450	0	ENST00000334344.6:c.2858C>G	p.Ala953Gly	p.A953G	ENST00000334344	NM_152641.2	953	gCt/gGt																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732458	74732458	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1287	77	657	0	ENST00000359995.5:c.451T>C	p.Ser151Pro	p.S151P	ENST00000359995	NM_001195427.1	151	Tcc/Ccc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48651678	48651678	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	150	550	0	ENST00000376670.3:c.844T>A	p.Cys282Ser	p.C282S	ENST00000376670	NM_002049.3	282	Tgc/Agc																																																																															
POLE	5426	MSKCC	GRCh37	12	133201391	133201394	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	GAAG	GAAG	AAAAA			P-0005567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	177	440	1	ENST00000320574.5:c.6750_6753delinsTTTTT	p.Met2252TyrfsTer52	p.M2252Yfs*52	ENST00000320574	NM_006231.2	2250	gtCTTC/gtTTTTT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577085	+	missense_variant	Missense_Mutation	ONP	CCTC	CCTC	TCTT			P-0005613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	735	787	1	ENST00000269305.4:c.853_856delinsAAGA	p.Glu285_Glu286delinsLysLys	p.E285_E286delinsKK	ENST00000269305	NM_001126112.2	285	GAGGaa/AAGAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0005792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	911	751	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202269	138202269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	613	558	0	ENST00000237289.4:c.2186G>A	p.Ser729Asn	p.S729N	ENST00000237289	NM_001270507.1	729	aGc/aAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247367	153247367	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs747241612		P-0005792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	387	354	0	ENST00000281708.4:c.1435C>G	p.Arg479Gly	p.R479G	ENST00000281708	NM_033632.3	479	Cga/Gga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212537911	212537911	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755861643		P-0005792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	517	568	2	ENST00000342788.4:c.1694G>A	p.Gly565Asp	p.G565D	ENST00000342788	NM_005235.2	565	gGc/gAc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247472	71247472	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	1180	624	0	ENST00000318789.4:c.61G>T	p.Gly21Cys	p.G21C	ENST00000318789	NM_032682.5	21	Ggc/Tgc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508990	106508990	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	488	481	0	ENST00000359195.3:c.984C>A	p.Asp328Glu	p.D328E	ENST00000359195	NM_002649.2	328	gaC/gaA																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864853	57864853	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1392	1033	1089	2	ENST00000228682.2:c.2330A>T	p.Gln777Leu	p.Q777L	ENST00000228682	NM_005269.2	777	cAa/cTa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39617654	39617654	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0005792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	3298	461	0	ENST00000262039.4:c.1840-2A>T		p.X614_splice	ENST00000262039	NM_002647.2	614																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5229527	5229527	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	437	177	0	ENST00000357368.4:c.2324A>G	p.Lys775Arg	p.K775R	ENST00000357368	NM_002850.3	775	aAg/aGg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099134	157099135	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0005792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	212	205	0	ENST00000346085.5:c.74_75del	p.Leu25GlnfsTer206	p.L25Qfs*206	ENST00000346085	NM_020732.3	24	gCT/g																																																																															
NF1	4763	MSKCC	GRCh37	17	29576098	29576098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	624	797	0	ENST00000358273.4:c.4076del	p.Pro1359LeufsTer19	p.P1359Lfs*19	ENST00000358273	NM_001042492.2	1357	ttC/tt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	299	389	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66242723	66242723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1095	135	731	0	ENST00000273854.3:c.1849C>A	p.Leu617Ile	p.L617I	ENST00000273854	NM_004439.5	617	Cta/Ata																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828792	72828792	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	341	991	0	ENST00000268489.5:c.7789C>A	p.Pro2597Thr	p.P2597T	ENST00000268489	NM_006885.3	2597	Cca/Aca																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245609	46245609	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	221	625	0	ENST00000334344.6:c.3707del	p.Pro1236HisfsTer7	p.P1236Hfs*7	ENST00000334344	NM_152641.2	1235	Ccc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578231	7578232	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAAT			P-0005855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	181	703	1	ENST00000269305.4:c.614_617dup	p.Asp207PhefsTer3	p.D207Ffs*3	ENST00000269305	NM_001126112.2	206	ttg/ttATTTg																																																																															
MYD88	4615	MSKCC	GRCh37	3	38180451	38180461	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGACTGCTC	GCCGACTGCTC	-			P-0005855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	141	568	0	ENST00000396334.3:c.300_310del	p.Arg101AlafsTer19	p.R101Afs*19	ENST00000396334	NM_002468.4	100	gGCCGACTGCTC/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	88	496	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0006072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	154	825	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860053	57860053	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200444628		P-0006072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1252	114	1078	7	ENST00000228682.2:c.793C>T	p.Arg265Trp	p.R265W	ENST00000228682	NM_005269.2	265	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0006151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	2376	560	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782620		P-0006151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	188	572	2	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																																																															
SDHC	6391	MSKCC	GRCh37	1	161293455	161293455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1076	64	446	0	ENST00000367975.2:c.72C>G	p.Ile24Met	p.I24M	ENST00000367975	NM_003001.3	24	atC/atG																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212615430	212615430	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0006151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	68	495	0	ENST00000342788.4:c.557-1G>T		p.X186_splice	ENST00000342788	NM_005235.2	186																																																																																
TP63	8626	MSKCC	GRCh37	3	189590660	189590660	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	53	425	0	ENST00000264731.3:c.1225G>C	p.Glu409Gln	p.E409Q	ENST00000264731	NM_003722.4	409	Gag/Cag																																																																															
ATM	472	MSKCC	GRCh37	11	108165783	108165783	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1060501627		P-0006151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	54	444	0	ENST00000278616.4:c.4906C>G	p.Gln1636Glu	p.Q1636E	ENST00000278616	NM_000051.3	1636	Cag/Gag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111524	8111525	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	352	516	0	ENST00000346208.3:c.1011dup	p.Cys338LeufsTer14	p.C338Lfs*14	ENST00000346208		337	gtc/gtCc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46597593	46597593	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	166	519	0	ENST00000262741.5:c.32A>G	p.Asp11Gly	p.D11G	ENST00000262741	NM_003629.3	11	gAt/gGt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508190	106508190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	91	263	0	ENST00000359195.3:c.184G>A	p.Ala62Thr	p.A62T	ENST00000359195	NM_002649.2	62	Gcc/Acc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419922	152419923	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATGACC			P-0006169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	58	387	0	ENST00000206249.3:c.1610_1615dup	p.Asp538_Leu539insHisAsp	p.D538_L539insHD	ENST00000206249	NM_000125.3	537	tat/tATGACCat																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419922	152419923	+	missense_variant	Missense_Mutation	DNP	TA	TA	AG			P-0006169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	57	388	0	ENST00000206249.3:c.1609_1610delinsAG	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	TAt/AGt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440866	52440866	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1220529268		P-0006409-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	93	963	1	ENST00000460680.1:c.638G>A	p.Arg213His	p.R213H	ENST00000460680	NM_004656.3	213	cGt/cAt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620685	52620685	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006409-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	93	417	0	ENST00000394830.3:c.3068C>G	p.Pro1023Arg	p.P1023R	ENST00000394830	NM_018313.4	1023	cCa/cGa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396443	396443	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006409-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	232	1092	0	ENST00000262320.3:c.583G>T	p.Glu195Ter	p.E195*	ENST00000262320	NM_003502.3	195	Gaa/Taa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180051038	180051066	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTCTTGCTGCTGCCGCCGCCGGCTGCC	AGGTCTTGCTGCTGCCGCCGCCGGCTGCC	-			P-0006409-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	160	855	0	ENST00000261937.6:c.1422-5_1445del		p.X474_splice	ENST00000261937	NM_182925.4	474																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	119	374	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0006730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	56	219	0	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0006730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	219	410	0	ENST00000269305.4:c.497C>G	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tGa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153271192	153271192	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0006730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	93	333	0	ENST00000281708.4:c.584+2T>G		p.X195_splice	ENST00000281708	NM_033632.3	195																																																																																
RECQL4	9401	MSKCC	GRCh37	8	145738696	145738696	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762402665		P-0006730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1537	129	309	2	ENST00000428558.2:c.2368G>A	p.Gly790Arg	p.G790R	ENST00000428558	NM_004260.3	790	Ggg/Agg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836985	89836985	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs539161141		P-0006730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	179	415	0	ENST00000389301.3:c.2209G>A	p.Ala737Thr	p.A737T	ENST00000389301	NM_000135.2	737	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0006808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	311	249	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162475188	162475188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	357	343	1	ENST00000366898.1:c.553G>A	p.Asp185Asn	p.D185N	ENST00000366898	NM_004562.2	185	Gat/Aat																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891209	101891209	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	209	308	0	ENST00000374994.4:c.170C>G	p.Ser57Cys	p.S57C	ENST00000374994	NM_004612.2	57	tCt/tGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29657313	29657313	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0006808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	107	216	0	ENST00000358273.4:c.5610-1G>T		p.X1870_splice	ENST00000358273	NM_001042492.2	1870																																																																																
RPTOR	57521	MSKCC	GRCh37	17	78867660	78867660	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	402	350	0	ENST00000306801.3:c.2396T>A	p.Leu799His	p.L799H	ENST00000306801	NM_020761.2	799	cTc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40979283	40979283	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	270	291	0	ENST00000373198.4:c.1850G>T	p.Arg617Leu	p.R617L	ENST00000373198	NM_133170.3	617	cGg/cTg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675550	86675554	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGTTA	AGTTA	-			P-0006808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	47	169	0	ENST00000274376.6:c.2489_2493del		p.X830_splice	ENST00000274376	NM_002890.2	830																																																																																
PTEN	5728	MSKCC	GRCh37	10	89717619	89717633	+	inframe_deletion	In_Frame_Del	DEL	TTGTGGTCTGCCAGC	TTGTGGTCTGCCAGC	-			P-0006808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	216	214	0	ENST00000371953.3:c.645_659del	p.Phe215_Gln219del	p.F215_Q219del	ENST00000371953	NM_000314.4	215	tTTGTGGTCTGCCAGCta/tta																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	372	435	0	ENST00000346208.3:c.1003dup	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645652	12645652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	92	272	0	ENST00000251849.4:c.817G>T	p.Asp273Tyr	p.D273Y	ENST00000251849	NM_002880.3	273	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0007014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	173	304	0	ENST00000269305.4:c.376-1G>C		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	88	270	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133252394	133252394	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	80	265	0	ENST00000320574.5:c.1033C>T	p.Gln345Ter	p.Q345*	ENST00000320574	NM_006231.2	345	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0007136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	353	494	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0007136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	164	338	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0007136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	68	218	1	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672519	30672519	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	357	514	1	ENST00000376406.3:c.4441T>A	p.Ser1481Thr	p.S1481T	ENST00000376406	NM_014641.2	1481	Tcc/Acc																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981660	101981660	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			58	12	32	0	ENST00000282441.5:c.81G>C	p.Gln27His	p.Q27H	ENST00000282441	NM_001130145.2	27	caG/caC																																																																															
POLE	5426	MSKCC	GRCh37	12	133218347	133218347	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760235113		P-0007136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	312	420	0	ENST00000320574.5:c.5264G>A	p.Gly1755Glu	p.G1755E	ENST00000320574	NM_006231.2	1755	gGg/gAg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857538	9857538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778951185		P-0007136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	63	292	0	ENST00000330684.3:c.3863G>A	p.Arg1288His	p.R1288H	ENST00000330684	NM_001134407.1	1288	cGt/cAt																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792869	33792869	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	223	141	0	ENST00000498907.2:c.452G>C	p.Gly151Ala	p.G151A	ENST00000498907	NM_004364.3	151	gGg/gCg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412109	63412109	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1157288902		P-0007136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1399	458	804	1	ENST00000330258.3:c.1058G>A	p.Arg353Gln	p.R353Q	ENST00000330258	NM_152424.3	353	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	627	577	1	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
STAT3	6774	MSKCC	GRCh37	17	40474396	40474396	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	381	765	1	ENST00000264657.5:c.2005C>A	p.Pro669Thr	p.P669T	ENST00000264657	NM_139276.2	669	Cca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0007500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	72	418	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	322	493	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212568848	212568848	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	192	450	1	ENST00000342788.4:c.1270G>T	p.Gly424Cys	p.G424C	ENST00000342788	NM_005235.2	424	Ggt/Tgt																																																																															
ATR	545	MSKCC	GRCh37	3	142279190	142279190	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	383	506	1	ENST00000350721.4:c.1456G>T	p.Val486Phe	p.V486F	ENST00000350721	NM_001184.3	486	Gtt/Ttt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178128	56178128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	170	385	0	ENST00000399503.3:c.3101C>T	p.Pro1034Leu	p.P1034L	ENST00000399503	NM_005921.1	1034	cCt/cTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220410	1220410	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	309	515	0	ENST00000326873.7:c.503A>T	p.His168Leu	p.H168L	ENST00000326873	NM_000455.4	168	cAt/cTt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621169	1621169	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	386	553	0	ENST00000344749.5:c.977G>T	p.Gly326Val	p.G326V	ENST00000344749	NM_001136139.2	326	gGc/gTc																																																																															
CIC	23152	MSKCC	GRCh37	19	42791760	42791760	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	261	361	0	ENST00000575354.2:c.646G>T	p.Ala216Ser	p.A216S	ENST00000575354	NM_015125.3	216	Gcc/Tcc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022589	31022589	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1478929932		P-0007638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	524	527	1	ENST00000375687.4:c.2074C>T	p.Gln692Ter	p.Q692*	ENST00000375687	NM_015338.5	692	Cag/Tag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934205	39934205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	564	738	2	ENST00000378444.4:c.394G>T	p.Val132Leu	p.V132L	ENST00000378444	NM_001123385.1	132	Gtg/Ttg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044887	47044887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	256	434	0	ENST00000329236.7:c.1979G>T	p.Ser660Ile	p.S660I	ENST00000329236	NM_001204466.1	660	aGt/aTt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411080	63411082	+	stop_gained	Nonsense_Mutation	ONP	CTC	CTC	TTT			P-0007638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	205	567	0	ENST00000330258.3:c.2085_2087delinsAAA	p.Trp695_Arg696delinsTer	p.W695_R696delins*	ENST00000330258	NM_152424.3	695	tgGAGg/tgAAAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0007771-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	486	504	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55227855	55227855	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007771-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	304	334	0	ENST00000275493.2:c.1322T>G	p.Val441Gly	p.V441G	ENST00000275493	NM_005228.3	441	gTc/gGc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195296	102195296	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238807475		P-0007771-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	242	742	1	ENST00000263464.3:c.56C>T	p.Thr19Met	p.T19M	ENST00000263464	NM_001165.4	19	aCg/aTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350291	15350291	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1233820799		P-0007771-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	495	432	1	ENST00000263377.2:c.3488G>A	p.Arg1163Gln	p.R1163Q	ENST00000263377	NM_058243.2	1163	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112164587	112164587	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007771-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	278	257	0	ENST00000257430.4:c.1661del	p.Arg554GlnfsTer4	p.R554Qfs*4	ENST00000257430	NM_000038.5	554	cGa/ca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	247	269	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0007808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	559	582	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500413	99500413	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	259	563	0	ENST00000268035.6:c.3846C>G	p.Ser1282Arg	p.S1282R	ENST00000268035	NM_000875.3	1282	agC/agG																																																																															
NF1	4763	MSKCC	GRCh37	17	29548908	29548908	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	175	349	0	ENST00000358273.4:c.1682G>A	p.Trp561Ter	p.W561*	ENST00000358273	NM_001042492.2	561	tGg/tAg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060953	38060968	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCCCCTGTCGCCGT	CGCCCCCTGTCGCCGT	-			P-0007808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	129	226	1	ENST00000250448.2:c.1021_1036del	p.Thr341ProfsTer4	p.T341Pfs*4	ENST00000250448	NM_004496.3	341	ACGGCGACAGGGGGCGcc/cc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0007887-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			370	8	441	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94179016	94179017	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs876660269		P-0007887-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			513	76	687	0	ENST00000323929.3:c.1826dup	p.Thr610AspfsTer7	p.T610Dfs*7	ENST00000323929	NM_005591.3	609	aag/aaAg																																																																															
APC	324	MSKCC	GRCh37	5	112154817	112154817	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007887-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			603	85	710	0	ENST00000257430.4:c.1088A>G	p.Asn363Ser	p.N363S	ENST00000257430	NM_000038.5	363	aAt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587780075		P-0007977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	117	509	0	ENST00000269305.4:c.800G>C	p.Arg267Pro	p.R267P	ENST00000269305	NM_001126112.2	267	cGg/cCg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566703	212566703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	23	408	0	ENST00000342788.4:c.1478C>T	p.Ala493Val	p.A493V	ENST00000342788	NM_005235.2	493	gCt/gTt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33290651	33290651	+	5_prime_UTR_variant	5'UTR	SNP	C	C	T			P-0007977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	25	444	0	ENST00000374542.5:c.-65G>A		p.*22*	ENST00000374542	NM_001141970.1																																																																																	
PAK1	5058	MSKCC	GRCh37	11	77066734	77066734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	60	530	0	ENST00000356341.3:c.751G>A	p.Glu251Lys	p.E251K	ENST00000356341	NM_002576.4	251	Gag/Aag																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871191	12871191	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	24	159	0	ENST00000228872.4:c.418A>C	p.Ser140Arg	p.S140R	ENST00000228872	NM_004064.3	140	Agc/Cgc																																																																															
B2M	567	MSKCC	GRCh37	15	45003757	45003757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	72	376	4	ENST00000558401.1:c.13G>A	p.Val5Met	p.V5M	ENST00000558401	NM_004048.2	5	Gtg/Atg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602612	10602612	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	65	325	1	ENST00000171111.5:c.966del	p.Lys323ArgfsTer5	p.K323Rfs*5	ENST00000171111	NM_203500.1	322	ccC/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0008023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	241	393	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
BARD1	580	MSKCC	GRCh37	2	215609807	215609807	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	105	464	0	ENST00000260947.4:c.1887G>A	p.Trp629Ter	p.W629*	ENST00000260947	NM_000465.2	629	tgG/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112174352	112174352	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	50	223	0	ENST00000257430.4:c.3061C>G	p.Leu1021Val	p.L1021V	ENST00000257430	NM_000038.5	1021	Cta/Gta																																																																															
BBC3	27113	MSKCC	GRCh37	19	47729983	47730152	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCCGCCAGCGAGAGCGAGGGCTGAGGACCTTGGAGAGGCAGAGGGGCGCGGTCAGCACCCACCACCCCTCCAGGCCTCGAGGTGTCTCGGCCTGCTCCCCTCTTTCCCAGCCACTGCTCCCCGCCTCATTTCTAGTGATCCCATCGCTAGTGAGTCAATTTCTCAGCTT	CTCCGCCAGCGAGAGCGAGGGCTGAGGACCTTGGAGAGGCAGAGGGGCGCGGTCAGCACCCACCACCCCTCCAGGCCTCGAGGTGTCTCGGCCTGCTCCCCTCTTTCCCAGCCACTGCTCCCCGCCTCATTTCTAGTGATCCCATCGCTAGTGAGTCAATTTCTCAGCTT	-			P-0008023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	30	103	0	ENST00000449228.1:c.378-141_406del		p.X126_splice	ENST00000449228	NM_001127240.2	126																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40827957	40827978	+	frameshift_variant	Frame_Shift_Del	DEL	TCGGCAGAGGCCACAGGCCCCA	TCGGCAGAGGCCACAGGCCCCA	-			P-0008023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	50	262	0	ENST00000373198.4:c.2450_2471del	p.Met817ThrfsTer54	p.M817Tfs*54	ENST00000373198	NM_133170.3	817	aTGGGGCCTGTGGCCTCTGCCGAc/ac																																																																															
ESR1	2099	MSKCC	GRCh37	6	152415537	152415537	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519714		P-0008104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	99	610	0	ENST00000206249.3:c.1387T>C	p.Ser463Pro	p.S463P	ENST00000206249	NM_000125.3	463	Tcc/Ccc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	34	64	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8471047	8471047	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201751722		P-0008171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	48	159	0	ENST00000356435.5:c.3452G>A	p.Arg1151His	p.R1151H	ENST00000356435		1151	cGc/cAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189835	66189835	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs55784741		P-0008171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	49	99	0	ENST00000273854.3:c.3111G>T	p.Leu1037Phe	p.L1037F	ENST00000273854	NM_004439.5	1037	ttG/ttT																																																																															
FLCN	201163	MSKCC	GRCh37	17	17125968	17125968	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	24	272	0	ENST00000285071.4:c.626A>C	p.Glu209Ala	p.E209A	ENST00000285071	NM_144997.5	209	gAg/gCg																																																																															
CDH1	999	MSKCC	GRCh37	16	68857506	68857507	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0008171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	24	247	0	ENST00000261769.5:c.2141_2142del	p.Leu714ArgfsTer33	p.L714Rfs*33	ENST00000261769	NM_004360.3	714	cTT/c																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0008267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	386	527	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0008267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	268	397	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0008267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	152	403	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	144	306	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609934	81609934	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369995834		P-0008267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	190	362	0	ENST00000298171.2:c.1532C>T	p.Thr511Met	p.T511M	ENST00000298171	NM_000369.2	511	aCg/aTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0008283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	181	387	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0008283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	364	641	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165236	47165236	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	21	380	0	ENST00000409792.3:c.890A>C	p.Lys297Thr	p.K297T	ENST00000409792	NM_014159.6	297	aAg/aCg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295313	1295313	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0008283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	34	512	1				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0008322-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	164	254	7	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163634	47163634	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008322-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	150	316	0	ENST00000409792.3:c.2492C>A	p.Ser831Ter	p.S831*	ENST00000409792	NM_014159.6	831	tCa/tAa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53225899	53225899	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008322-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	293	199	0	ENST00000375401.3:c.2950G>T	p.Glu984Ter	p.E984*	ENST00000375401	NM_004187.3	984	Gag/Tag																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851382	156851382	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	157	518	0	ENST00000524377.1:c.2339G>T	p.Arg780Leu	p.R780L	ENST00000524377	NM_002529.3	780	cGg/cTg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724521	162724521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	187	597	2	ENST00000367921.3:c.293C>A	p.Thr98Asn	p.T98N	ENST00000367921	NM_006182.2	98	aCt/aAt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523103	25523103	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	160	417	0	ENST00000264709.3:c.82G>T	p.Glu28Ter	p.E28*	ENST00000264709	NM_175629.2	28	Gag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125789	47125789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	306	408	0	ENST00000409792.3:c.5481G>T	p.Trp1827Cys	p.W1827C	ENST00000409792	NM_014159.6	1827	tgG/tgT																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134644668	134644668	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	105	457	0	ENST00000398015.3:c.69G>C	p.Met23Ile	p.M23I	ENST00000398015	NM_004441.4	23	atG/atC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	303	325	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	253	780	0	ENST00000244661.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000244661	NM_003537.3	106	Gag/Cag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680812	30680812	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1443	193	632	0	ENST00000376406.3:c.907G>T	p.Val303Leu	p.V303L	ENST00000376406	NM_014641.2	303	Gtg/Ttg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066557	94066557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	567	870	0	ENST00000369303.4:c.1202C>T	p.Thr401Ile	p.T401I	ENST00000369303	NM_004440.3	401	aCt/aTt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739790	41739790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	443	798	0	ENST00000242208.4:c.183C>A	p.His61Gln	p.H61Q	ENST00000242208	NM_002192.2	61	caC/caA																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209511	98209511	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	225	421	1	ENST00000331920.6:c.4027G>T	p.Gly1343Trp	p.G1343W	ENST00000331920	NM_000264.3	1343	Ggg/Tgg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900231	101900231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	480	698	0	ENST00000374994.4:c.665G>A	p.Gly222Glu	p.G222E	ENST00000374994	NM_004612.2	222	gGa/gAa																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633641	69633641	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	52	94	0	ENST00000334134.2:c.61C>A	p.Pro21Thr	p.P21T	ENST00000334134	NM_005247.2	21	Cct/Act																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344669	118344669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	429	500	1	ENST00000534358.1:c.2795G>T	p.Gly932Val	p.G932V	ENST00000534358	NM_005933.3	932	gGg/gTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18699296	18699296	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	203	638	0	ENST00000266497.5:c.3397G>C	p.Asp1133His	p.D1133H	ENST00000266497		1133	Gac/Cac																																																																															
FLT1	2321	MSKCC	GRCh37	13	28891714	28891714	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	542	603	0	ENST00000282397.4:c.3307G>T	p.Val1103Leu	p.V1103L	ENST00000282397	NM_002019.4	1103	Gta/Tta																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782264	56782264	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	483	766	0	ENST00000308159.5:c.105G>C	p.Glu35Asp	p.E35D	ENST00000308159	NM_014669.4	35	gaG/gaC																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832400	72832400	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	1359	828	0	ENST00000268489.5:c.4181C>A	p.Ser1394Ter	p.S1394*	ENST00000268489	NM_006885.3	1394	tCa/tAa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347312	89347312	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	994	805	0	ENST00000301030.4:c.5638G>C	p.Glu1880Gln	p.E1880Q	ENST00000301030	NM_001256183.1	1880	Gag/Cag																																																																															
GPS2	2874	MSKCC	GRCh37	17	7218302	7218302	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	367	591	0	ENST00000380728.2:c.70A>G	p.Met24Val	p.M24V	ENST00000380728		24	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577536	+	missense_variant	Missense_Mutation	ONP	CCT	CCT	ACC			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	318	494	0	ENST00000269305.4:c.745_747delinsGGT	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	AGG/GGT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602823	10602823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	367	506	0	ENST00000171111.5:c.755G>T	p.Trp252Leu	p.W252L	ENST00000171111	NM_203500.1	252	tGg/tTg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546913	9546913	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	173	420	0	ENST00000353224.5:c.1109G>T	p.Ser370Ile	p.S370I	ENST00000353224	NM_177990.2	370	aGt/aTt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624824	9624824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	138	418	0	ENST00000353224.5:c.153G>T	p.Lys51Asn	p.K51N	ENST00000353224	NM_177990.2	51	aaG/aaT																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216380	7216380	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	387	508	0	ENST00000380728.2:c.868del	p.Gln290SerfsTer55	p.Q290Sfs*55	ENST00000380728		290	Cag/ag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0008427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1085	3659	418	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0008427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	839	500	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																																																															
RB1	5925	MSKCC	GRCh37	13	48916765	48916781	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGGAATCTGTATCTT	TGGGGAATCTGTATCTT	-			P-0008427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	472	338	0	ENST00000267163.4:c.296_312del	p.Trp99TyrfsTer5	p.W99Yfs*5	ENST00000267163	NM_000321.2	99	TGGGGAATCTGTATCTTt/t																																																																															
CDC73	79577	MSKCC	GRCh37	1	193099338	193099338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			304	72	176	0	ENST00000367435.3:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000367435	NM_024529.4	91	cGa/cAa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129329	152129329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			149	44	71	0	ENST00000206249.3:c.287del	p.Gly96ValfsTer13	p.G96Vfs*13	ENST00000206249	NM_000125.3	94	ctG/ct																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279885	46279887	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-	rs772979098		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			306	30	149	0	ENST00000371998.3:c.3816_3818del	p.Gln1276del	p.Q1276del	ENST00000371998		1271	CAG/-																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022470	31022470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			140	10	64	0	ENST00000375687.4:c.1955G>A	p.Gly652Asp	p.G652D	ENST00000375687	NM_015338.5	652	gGc/gAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			341	98	205	1	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
CASP8	841	MSKCC	GRCh37	2	202139625	202139626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			304	70	173	0	ENST00000358485.4:c.790dup	p.Val264GlyfsTer13	p.V264Gfs*13	ENST00000358485	NM_001080125.1	262	-/G																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808898	1808898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1416045205		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			244	61	110	0	ENST00000260795.2:c.2334del	p.Ser779AlafsTer41	p.S779Afs*41	ENST00000260795		777	aCc/ac																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348566	89348568	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-	rs753054998		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			517	99	233	1	ENST00000301030.4:c.4382_4384del	p.Lys1461del	p.K1461del	ENST00000301030	NM_001256183.1	1461	aAGAga/aga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285059	15285059	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs367543285		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			237	43	115	0	ENST00000263388.2:c.4556T>C	p.Leu1519Pro	p.L1519P	ENST00000263388	NM_000435.2	1519	cTg/cCg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096048	11096048	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			250	82	147	2	ENST00000344626.4:c.326del	p.Pro109ArgfsTer194	p.P109Rfs*194	ENST00000344626	NM_003072.3	108	Ccc/cc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			349	98	195	0	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563349	21563349	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			321	85	187	0	ENST00000382592.4:c.570del	p.Tyr191ThrfsTer49	p.Y191Tfs*49	ENST00000382592	NM_014572.2	190	ccC/cc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448325	56448325	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			300	90	182	0	ENST00000407977.2:c.322A>G	p.Lys108Glu	p.K108E	ENST00000407977		108	Aag/Gag																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			350	194	245	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			174	37	75	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944250	81944250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147396004		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			295	74	159	0	ENST00000359376.3:c.1859C>T	p.Thr620Met	p.T620M	ENST00000359376	NM_002661.3	620	aCg/aTg																																																																															
AR	367	MSKCC	GRCh37	X	66766562	66766562	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			107	26	65	0	ENST00000374690.3:c.1574G>C	p.Gly525Ala	p.G525A	ENST00000374690	NM_000044.3	525	gGc/gCc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			247	97	139	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
ERF	2077	MSKCC	GRCh37	19	42752768	42752768	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			292	61	120	0	ENST00000222329.4:c.1496del	p.Gly499AlafsTer32	p.G499Afs*32	ENST00000222329	NM_006494.2	499	gGc/gc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324886	31324887	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs760037174		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			77	32	36	0	ENST00000412585.2:c.49_50insG	p.Leu17ArgfsTer82	p.L17Rfs*82	ENST00000412585	NM_005514.6	17	ctg/cGtg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11272421	11272421	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777142056		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			315	94	182	0	ENST00000361445.4:c.3509G>A	p.Arg1170His	p.R1170H	ENST00000361445	NM_004958.3	1170	cGc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16245516	16245517	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			365	59	217	0	ENST00000375759.3:c.1495dup	p.Glu499GlyfsTer6	p.E499Gfs*6	ENST00000375759	NM_015001.2	497	-/G																																																																															
SPEN	23013	MSKCC	GRCh37	1	16248844	16248844	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			290	72	156	0	ENST00000375759.3:c.1850G>A	p.Arg617Lys	p.R617K	ENST00000375759	NM_015001.2	617	aGa/aAa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16264466	16264466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			304	93	155	2	ENST00000375759.3:c.10669G>A	p.Ala3557Thr	p.A3557T	ENST00000375759	NM_015001.2	3557	Gca/Aca																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846331	156846331	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			236	78	120	0	ENST00000524377.1:c.1772A>T	p.Tyr591Phe	p.Y591F	ENST00000524377	NM_002529.3	591	tAt/tTt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746063	162746063	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			283	66	178	0	ENST00000367921.3:c.2186T>G	p.Phe729Cys	p.F729C	ENST00000367921	NM_006182.2	729	tTt/tGt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243801041	243801041	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			287	69	189	0	ENST00000263826.5:c.433A>G	p.Met145Val	p.M145V	ENST00000263826	NM_005465.4	145	Atg/Gtg																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518493	69518493	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			89	31	45	0	ENST00000294312.3:c.152G>C	p.Gly51Ala	p.G51A	ENST00000294312	NM_005117.2	51	gGc/gCc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942232	71942232	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs775939148		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			213	52	121	0	ENST00000298229.2:c.1496C>T	p.Pro499Leu	p.P499L	ENST00000298229	NM_001567.3	499	cCg/cTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943705	71943705	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			365	101	198	0	ENST00000298229.2:c.1748T>G	p.Leu583Arg	p.L583R	ENST00000298229	NM_001567.3	583	cTc/cGc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18719951	18719951	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1333356873		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			360	77	261	0	ENST00000266497.5:c.3848A>G	p.Tyr1283Cys	p.Y1283C	ENST00000266497		1283	tAc/tGc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644545	21644545	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			359	75	244	0	ENST00000421138.2:c.122T>C	p.Val41Ala	p.V41A	ENST00000421138		41	gTc/gCc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421097	49421097	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			171	57	75	0	ENST00000301067.7:c.14652del	p.Ala4885ProfsTer110	p.A4885Pfs*110	ENST00000301067	NM_003482.3	4884	ccC/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436396	49436396	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			285	78	162	0	ENST00000301067.7:c.5815A>G	p.Ser1939Gly	p.S1939G	ENST00000301067	NM_003482.3	1939	Agc/Ggc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441773	49441773	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			272	70	143	0	ENST00000301067.7:c.4211A>G	p.Tyr1404Cys	p.Y1404C	ENST00000301067	NM_003482.3	1404	tAt/tGt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906501	32906501	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1347459118		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			280	75	174	0	ENST00000380152.3:c.886T>C	p.Tyr296His	p.Y296H	ENST00000380152		296	Tat/Cat																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988426	36988426	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1341967476		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			78	42	41	0	ENST00000354822.5:c.227C>T	p.Ala76Val	p.A76V	ENST00000354822	NM_001079668.2	76	gCg/gTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2103385	2103385	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs45517099		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			292	87	140	0	ENST00000219476.3:c.268C>T	p.Gln90Ter	p.Q90*	ENST00000219476	NM_000548.3	90	Cag/Tag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639636	3639636	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367562934		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			394	51	166	0	ENST00000294008.3:c.4003G>A	p.Gly1335Ser	p.G1335S	ENST00000294008	NM_032444.2	1335	Ggc/Agc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3656513	3656513	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			449	117	249	0	ENST00000294008.3:c.722T>A	p.Val241Asp	p.V241D	ENST00000294008	NM_032444.2	241	gTc/gAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778277	3778277	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			271	25	144	0	ENST00000262367.5:c.6771G>T	p.Gln2257His	p.Q2257H	ENST00000262367	NM_004380.2	2257	caG/caT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830806	72830807	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			321	74	174	0	ENST00000268489.5:c.5774dup	p.Gly1926TrpfsTer3	p.G1926Wfs*3	ENST00000268489	NM_006885.3	1925	ggt/ggGt																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732986	74732986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			118	38	47	0	ENST00000359995.5:c.257G>T	p.Arg86Leu	p.R86L	ENST00000359995	NM_001195427.1	86	cGg/cTg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4090613	4090613	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			214	63	110	0	ENST00000262948.5:c.1186A>G	p.Thr396Ala	p.T396A	ENST00000262948	NM_030662.3	396	Acg/Gcg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602918	10602918	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			337	81	156	0	ENST00000171111.5:c.660C>A	p.Phe220Leu	p.F220L	ENST00000171111	NM_203500.1	220	ttC/ttA																																																																															
CARM1	10498	MSKCC	GRCh37	19	11030586	11030586	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			308	83	183	0	ENST00000327064.4:c.1140T>A	p.His380Gln	p.H380Q	ENST00000327064	NM_199141.1	380	caT/caA																																																																															
CARM1	10498	MSKCC	GRCh37	19	11030613	11030613	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			290	71	158	0	ENST00000327064.4:c.1167C>A	p.Phe389Leu	p.F389L	ENST00000327064	NM_199141.1	389	ttC/ttA																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097083	11097084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			258	71	128	0	ENST00000344626.4:c.579dup	p.Gln194AlafsTer93	p.Q194Afs*93	ENST00000344626	NM_003072.3	192	agg/aGgg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354260	15354260	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			255	76	140	0	ENST00000263377.2:c.2620A>G	p.Ser874Gly	p.S874G	ENST00000263377	NM_058243.2	874	Agc/Ggc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216153	36216153	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			303	88	137	0	ENST00000222270.7:c.3566del	p.Gly1189AlafsTer2	p.G1189Afs*2	ENST00000222270	NM_014727.1	1187	atG/at																																																																															
AKT2	208	MSKCC	GRCh37	19	40741201	40741201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			263	33	155	0	ENST00000392038.2:c.1232G>A	p.Ser411Asn	p.S411N	ENST00000392038	NM_001626.4	411	aGc/aAc																																																																															
CIC	23152	MSKCC	GRCh37	19	42791190	42791190	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1225908345		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			258	57	124	0	ENST00000575354.2:c.250C>T	p.Arg84Trp	p.R84W	ENST00000575354	NM_015125.3	84	Cgg/Tgg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50916729	50916729	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			301	74	136	0	ENST00000440232.2:c.2201T>C	p.Leu734Pro	p.L734P	ENST00000440232	NM_002691.3	734	cTg/cCg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919036	50919036	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746950229		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			291	96	108	1	ENST00000440232.2:c.2773G>A	p.Val925Met	p.V925M	ENST00000440232	NM_002691.3	925	Gtg/Atg																																																																															
EP300	2033	MSKCC	GRCh37	22	41574890	41574890	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			405	113	230	0	ENST00000263253.7:c.7175A>G	p.Asp2392Gly	p.D2392G	ENST00000263253	NM_001429.3	2392	gAc/gGc																																																																															
MST1	4485	MSKCC	GRCh37	3	49723623	49723623	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			76	12	40	0	ENST00000449682.2:c.1019A>G	p.Asp340Gly	p.D340G	ENST00000449682	NM_020998.3	340	gAc/gGc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52588830	52588830	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			236	52	140	0	ENST00000394830.3:c.4198A>G	p.Met1400Val	p.M1400V	ENST00000394830	NM_018313.4	1400	Atg/Gtg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480481	89480481	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			251	41	182	0	ENST00000336596.2:c.2318A>G	p.Asp773Gly	p.D773G	ENST00000336596	NM_005233.5	773	gAt/gGt																																																																															
ATR	545	MSKCC	GRCh37	3	142281404	142281404	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			323	97	232	0	ENST00000350721.4:c.840del	p.Val281Ter	p.V281*	ENST00000350721	NM_001184.3	280	ctT/ct																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504339	186504339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			224	31	122	0	ENST00000323963.5:c.681del	p.Lys227AsnfsTer3	p.K227Nfs*3	ENST00000323963		226	Aaa/aa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808915	1808915	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			247	74	111	0	ENST00000260795.2:c.2347T>G	p.Ser783Ala	p.S783A	ENST00000260795		783	Tca/Gca																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1955175	1955175	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			308	101	212	0	ENST00000382895.3:c.2262C>A	p.Ser754Arg	p.S754R	ENST00000382895	NM_133330.2	754	agC/agA																																																																															
KIT	3815	MSKCC	GRCh37	4	55604695	55604695	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			293	80	166	0	ENST00000288135.5:c.2903A>G	p.Gln968Arg	p.Q968R	ENST00000288135	NM_000222.2	968	cAg/cGg																																																																															
TET2	54790	MSKCC	GRCh37	4	106156238	106156238	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			236	70	136	0	ENST00000380013.4:c.1139A>G	p.Tyr380Cys	p.Y380C	ENST00000380013	NM_001127208.2	380	tAc/tGc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517795	187517795	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs539528886		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			187	60	95	0	ENST00000441802.2:c.12899C>T	p.Ala4300Val	p.A4300V	ENST00000441802	NM_005245.3	4300	gCg/gTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521225	187521225	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			344	89	161	0	ENST00000441802.2:c.11930T>C	p.Met3977Thr	p.M3977T	ENST00000441802	NM_005245.3	3977	aTg/aCg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31472274	31472274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			380	124	265	0	ENST00000344624.3:c.2137C>A	p.Leu713Met	p.L713M	ENST00000344624		713	Ctg/Atg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873603	35873603	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs776330345		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			170	49	133	0	ENST00000303115.3:c.559A>G	p.Lys187Glu	p.K187E	ENST00000303115	NM_002185.3	187	Aag/Gag																																																																															
APC	324	MSKCC	GRCh37	5	112178774	112178774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			364	31	168	0	ENST00000257430.4:c.7483A>G	p.Thr2495Ala	p.T2495A	ENST00000257430	NM_000038.5	2495	Aca/Gca																																																																															
IRF4	3662	MSKCC	GRCh37	6	394942	394942	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs944381620		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			264	84	182	0	ENST00000380956.4:c.338G>A	p.Arg113Gln	p.R113Q	ENST00000380956	NM_001195286.1	113	cGg/cAg																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031928	26031928	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			203	55	143	0	ENST00000244661.2:c.361A>G	p.Met121Val	p.M121V	ENST00000244661	NM_003537.3	121	Atg/Gtg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324735	31324735	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			77	15	36	0	ENST00000412585.2:c.74-1G>T		p.X25_splice	ENST00000412585	NM_005514.6	25																																																																																
STK19	8859	MSKCC	GRCh37	6	31947216	31947216	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs534553211		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			275	95	147	0	ENST00000375331.2:c.689C>T	p.Pro230Leu	p.P230L	ENST00000375331	NM_004197.1	230	cCg/cTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157469764	157469764	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			379	92	209	0	ENST00000346085.5:c.2558A>G	p.Tyr853Cys	p.Y853C	ENST00000346085	NM_020732.3	853	tAc/tGc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467635	50467635	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			218	41	97	0	ENST00000331340.3:c.870C>G	p.Asp290Glu	p.D290E	ENST00000331340	NM_006060.4	290	gaC/gaG																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878556	151878556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			334	87	176	0	ENST00000262189.6:c.6389C>T	p.Pro2130Leu	p.P2130L	ENST00000262189	NM_170606.2	2130	cCa/cTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151882679	151882679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			241	59	165	0	ENST00000262189.6:c.5046G>T	p.Trp1682Cys	p.W1682C	ENST00000262189	NM_170606.2	1682	tgG/tgT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945664	151945664	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1482538393		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			424	107	288	0	ENST00000262189.6:c.1855A>G	p.Ile619Val	p.I619V	ENST00000262189	NM_170606.2	619	Att/Gtt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021665	69021665	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs912103539		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			312	75	167	0	ENST00000288368.4:c.2953A>G	p.Met985Val	p.M985V	ENST00000288368	NM_024870.2	985	Atg/Gtg																																																																															
NBN	4683	MSKCC	GRCh37	8	90993674	90993674	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1438838735		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			313	71	184	0	ENST00000265433.3:c.249G>A	p.Met83Ile	p.M83I	ENST00000265433	NM_002485.4	83	atG/atA																																																																															
TEK	7010	MSKCC	GRCh37	9	27206633	27206633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			345	62	127	1	ENST00000380036.4:c.2418G>T	p.Lys806Asn	p.K806N	ENST00000380036	NM_000459.3	806	aaG/aaT																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87338509	87338509	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1437483265		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			287	67	169	0	ENST00000277120.3:c.605C>A	p.Ala202Asp	p.A202D	ENST00000277120		202	gCc/gAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98220567	98220567	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1253559528		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			222	57	137	0	ENST00000331920.6:c.2896G>A	p.Ala966Thr	p.A966T	ENST00000331920	NM_000264.3	966	Gca/Aca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401035	139401035	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1268504383		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			308	114	148	0	ENST00000277541.6:c.3958G>A	p.Gly1320Ser	p.G1320S	ENST00000277541	NM_017617.3	1320	Ggc/Agc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15833883	15833883	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1321533826		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			36	14	34	0	ENST00000307771.7:c.641G>A	p.Cys214Tyr	p.C214Y	ENST00000307771	NM_005089.3	214	tGc/tAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933233	39933233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			200	47	127	0	ENST00000378444.4:c.1366G>A	p.Asp456Asn	p.D456N	ENST00000378444	NM_001123385.1	456	Gac/Aac																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239687	53239687	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			98	82	100	0	ENST00000375401.3:c.1655T>C	p.Leu552Pro	p.L552P	ENST00000375401	NM_004187.3	552	cTg/cCg																																																																															
MED12	9968	MSKCC	GRCh37	X	70357657	70357657	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			123	89	107	0	ENST00000374080.3:c.5908A>T	p.Ser1970Cys	p.S1970C	ENST00000374080		1970	Agc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131691026		P-0008691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	388	362	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446807	49446807	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1105	159	402	0	ENST00000301067.7:c.1003C>G	p.Pro335Ala	p.P335A	ENST00000301067	NM_003482.3	335	Ccc/Gcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448509	49448509	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1111	168	392	0	ENST00000301067.7:c.202C>G	p.Leu68Val	p.L68V	ENST00000301067	NM_003482.3	68	Ctc/Gtc																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792770	33792770	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1457318927		P-0008691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	43	87	0	ENST00000498907.2:c.551C>G	p.Pro184Arg	p.P184R	ENST00000498907	NM_004364.3	184	cCg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0008705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	160	384	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612632	228612632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1265	128	950	1	ENST00000366696.1:c.395G>A	p.Arg132His	p.R132H	ENST00000366696	NM_003493.2	132	cGc/cAc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88670404	88670404	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	108	418	0	ENST00000360948.2:c.1282G>C	p.Asp428His	p.D428H	ENST00000360948	NM_001012338.2	428	Gac/Cac																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372117	55372118	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0008705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	14	147	0	ENST00000297316.4:c.807_808delinsAT	p.Met270Leu	p.M270L	ENST00000297316	NM_022454.3	269	ccCAtg/ccATtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519980		P-0008709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	135	245	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871063	12871063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	62	195	1	ENST00000228872.4:c.290G>A	p.Gly97Asp	p.G97D	ENST00000228872	NM_004064.3	97	gGt/gAt																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732361	74732361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1574	196	1052	0	ENST00000359995.5:c.548C>A	p.Ser183Tyr	p.S183Y	ENST00000359995	NM_001195427.1	183	tCc/tAc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176329	24176329	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	106	503	1	ENST00000263121.7:c.1120C>T	p.Arg374Trp	p.R374W	ENST00000263121	NM_003073.3	374	Cgg/Tgg																																																																															
EP300	2033	MSKCC	GRCh37	22	41551082	41551082	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	163	787	0	ENST00000263253.7:c.3226C>A	p.Arg1076Ser	p.R1076S	ENST00000263253	NM_001429.3	1076	Cgt/Agt																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074254	8074255	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0008709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1397	192	1272	0	ENST00000377482.5:c.403_404dup	p.Asn135LysfsTer41	p.N135Kfs*41	ENST00000377482	NM_018948.3	135	aac/aaAAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	206	609	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11270938	11270938	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1263804740		P-0008771-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	270	456	0	ENST00000361445.4:c.3587A>G	p.Asn1196Ser	p.N1196S	ENST00000361445	NM_004958.3	1196	aAt/aGt																																																																															
MGA	23269	MSKCC	GRCh37	15	42005421	42005421	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008771-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	564	794	0	ENST00000219905.7:c.3157C>T	p.Arg1053Ter	p.R1053*	ENST00000219905	NM_001164273.1	1053	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435296	56435296	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008771-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	131	263	0	ENST00000407977.2:c.1841A>G	p.Gln614Arg	p.Q614R	ENST00000407977		614	cAg/cGg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18534791	18534791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	67	531	1	ENST00000266497.5:c.1849C>A	p.Gln617Lys	p.Q617K	ENST00000266497		617	Cag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100077	27100080	+	frameshift_variant	Frame_Shift_Del	DEL	GCCT	GCCT	-			P-0008795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	222	597	0	ENST00000324856.7:c.3874_3877del	p.Pro1292GlufsTer2	p.P1292Efs*2	ENST00000324856	NM_006015.4	1291	gaGCCT/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579505	7579506	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0008795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	185	443	0	ENST00000269305.4:c.181_182del	p.Asp61Ter	p.D61*	ENST00000269305	NM_001126112.2	61	GAt/t																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	221	372	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	80	210	0	ENST00000304494.5:c.242C>G	p.Pro81Arg	p.P81R	ENST00000304494	NM_000077.4	81	cCc/cGc																																																																															
IGF1	3479	MSKCC	GRCh37	12	102869448	102869448	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs548821403		P-0008838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	52	344	0	ENST00000307046.8:c.193G>A	p.Val65Met	p.V65M	ENST00000307046	NM_001111285.1	65	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576903	7576904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0008838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	138	378	0	ENST00000269305.4:c.941_942dup	p.Ser315ProfsTer31	p.S315Pfs*31	ENST00000269305	NM_001126112.2	314	-/CC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0008840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1072	27	589	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0008840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	149	267	0	ENST00000397752.3:c.3028+1G>A		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782144		P-0008840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	87	384	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182641	38182641	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs387907272		P-0008840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	23	435	1	ENST00000396334.3:c.794T>C	p.Leu265Pro	p.L265P	ENST00000396334	NM_002468.4	265	cTg/cCg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527371	157527371	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1295685861		P-0008840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			959	113	449	0	ENST00000346085.5:c.5096T>C	p.Met1699Thr	p.M1699T	ENST00000346085	NM_020732.3	1699	aTg/aCg																																																																															
HGF	3082	MSKCC	GRCh37	7	81358978	81358978	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs374484762		P-0008840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	257	558	0	ENST00000222390.5:c.983G>T	p.Arg328Leu	p.R328L	ENST00000222390	NM_000601.4	328	cGt/cTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48939078	48939078	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	89	496	0	ENST00000267163.4:c.910G>T	p.Gly304Ter	p.G304*	ENST00000267163	NM_000321.2	304	Gga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	267	496	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410930	63410930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1237	135	639	2	ENST00000330258.3:c.2237C>T	p.Pro746Leu	p.P746L	ENST00000330258	NM_152424.3	746	cCt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398280	25398281	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0008908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	124	406	0	ENST00000256078.4:c.38_39delinsAA	p.Gly13Glu	p.G13E	ENST00000256078	NM_033360.2	13	gGC/gAA																																																																															
CENPA	1058	MSKCC	GRCh37	2	27015689	27015689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	177	766	0	ENST00000335756.4:c.276G>T	p.Leu92Phe	p.L92F	ENST00000335756	NM_001809.3	92	ttG/ttT																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928020	49928020	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	176	635	0	ENST00000296474.3:c.3708G>C	p.Arg1236Ser	p.R1236S	ENST00000296474	NM_002447.2	1236	agG/agC																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138376626	138376626	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	51	475	0	ENST00000289153.2:c.2848G>T	p.Gly950Cys	p.G950C	ENST00000289153	NM_006219.2	950	Ggc/Tgc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876287	35876287	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	47	306	0	ENST00000303115.3:c.1079G>T	p.Ser360Ile	p.S360I	ENST00000303115	NM_002185.3	360	aGc/aTc																																																																															
HGF	3082	MSKCC	GRCh37	7	81350090	81350090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	159	501	0	ENST00000222390.5:c.1242G>C	p.Met414Ile	p.M414I	ENST00000222390	NM_000601.4	414	atG/atC																																																																															
TET1	80312	MSKCC	GRCh37	10	70333887	70333887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	53	359	0	ENST00000373644.4:c.1792C>A	p.Gln598Lys	p.Q598K	ENST00000373644	NM_030625.2	598	Cag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108158369	108158369	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1060501528		P-0008908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	105	416	0	ENST00000278616.4:c.4036G>T	p.Glu1346Ter	p.E1346*	ENST00000278616	NM_000051.3	1346	Gag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038774	47038774	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	84	128	1	ENST00000329236.7:c.550G>T	p.Gly184Cys	p.G184C	ENST00000329236	NM_001204466.1	184	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			426	593	1170	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
EP300	2033	MSKCC	GRCh37	22	41531880	41531880	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			742	119	983	0	ENST00000263253.7:c.1592C>G	p.Ser531Ter	p.S531*	ENST00000263253	NM_001429.3	531	tCa/tGa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520000	106520000	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs759433704		P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			620	63	641	0	ENST00000359195.3:c.2428C>A	p.Pro810Thr	p.P810T	ENST00000359195	NM_002649.2	810	Cca/Aca																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741839	145741839	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758876038		P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			501	286	1151	0	ENST00000428558.2:c.664C>T	p.Pro222Ser	p.P222S	ENST00000428558	NM_004260.3	222	Cct/Tct																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522581	176522581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			525	388	1107	0	ENST00000292408.4:c.1678G>A	p.Glu560Lys	p.E560K	ENST00000292408	NM_213647.1	560	Gag/Aag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11314005	11314005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			667	137	1232	1	ENST00000361445.4:c.731G>T	p.Gly244Val	p.G244V	ENST00000361445	NM_004958.3	244	gGa/gTa																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39321570	39321570	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs758305071		P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			338	190	665	0	ENST00000373001.3:c.451A>G	p.Met151Val	p.M151V	ENST00000373001	NM_022157.3	151	Atg/Gtg																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366622	40366622	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			409	194	916	1	ENST00000397332.2:c.575del	p.Pro192GlnfsTer12	p.P192Qfs*12	ENST00000397332	NM_001033082.2	192	cCa/ca																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430351	78430351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			592	111	971	0	ENST00000370768.2:c.817G>A	p.Gly273Arg	p.G273R	ENST00000370768	NM_003902.3	273	Gga/Aga																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166248	118166248	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			320	141	615	0	ENST00000369448.3:c.758G>C	p.Arg253Pro	p.R253P	ENST00000369448	NM_017709.3	253	cGg/cCg																																																																															
SDHC	6391	MSKCC	GRCh37	1	161326551	161326551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			98	20	195	0	ENST00000367975.2:c.326G>T	p.Gly109Val	p.G109V	ENST00000367975	NM_003001.3	109	gGg/gTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332837	70332838	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			610	181	1072	2	ENST00000373644.4:c.747_748del	p.Ala250SerfsTer31	p.A250Sfs*31	ENST00000373644	NM_030625.2	248	GTg/g																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64128998	64130020	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGTAGCAAGACGGGGCATGGCAAGGTAGGTTGGCAGGGAAGTGGGGCTGGGGGAGGTGGAAAGGTGGGGTGTGAGGCAGGGGAGATGCAGGCCCTCACCCCGGCTCCACCCGGCAGGCTGTGGACTGGTGGAGCCTGGGCATCTTGCTCTTCGAGCTGCTGACGGGGGCCTCGCCCTTCACCCTGGAGGGCGAGAGGAACACGCAGGCTGAGGTGTCTCGGTGAGTAGGGCTGGACGTGGAGGGCGGCCAGAGGGCTGCAGGGCCTGCCTGGGCAGGGCTGTGGGTGGGGGGCTTGCTGCCCCTGACACCCCCCCAATCCTCCCAGACGGATCCTGAAGTGCTCCCCTCCCTTCCCCCCTCGGATCGGGCCCGTGGCGCAGGACCTGCTGCAGCGGCTGCTTTGTAAGGATCCTAAGAAGCGATTGGGCGCGGGGCCCCAGGGGGCACAAGAAGTCCGGAACCATCCCTTCTTCCAGGTGAGGCTGACTCAGGGCCCCATACCTCCTGGTGCATACCCAGGTGGGGCTGCTGTTCCAGGTTGAGGTTGTGCCTGGCCAGTTTCACTTTATTTGGAAATCCCCCCAGAGAAAGAAAGCAAGTGTGTGTCAGCTAGGTTTCTCTTCACATCCATCCCCACTGAAACTTGGCAGATGTGTTCCTGAAAGAAAGGATTCTAGGTTCATTGGCTGTTGGGGCTGTCAGGGATTTGAGAATGGATTGGTCGGTCCTTTCACTGGACAGACCCAGAGAAGGCAGGTGACCTGCCCCCGACGGCACAGTAAATGGTGCCGAGTTGGGAATAGACCTTGGGTCTAGATAGATCTCCTGCTGGTCCAAATCAGTACGGAAACCCACACTTATGGCTTTTAGCACCCACCCAGGCATTTTGTTCTTTGTCCCCGTCCCTGTACAGTCTGTGTGCCTGTCATTCAGATGGACGGTTGATCAGCACACATGGGTGTTTGCTCACTTGTTAGGAGCACACACATGTTAGAGTGCAGTGCAGAGTGAATCTGGCCATG	CGTAGCAAGACGGGGCATGGCAAGGTAGGTTGGCAGGGAAGTGGGGCTGGGGGAGGTGGAAAGGTGGGGTGTGAGGCAGGGGAGATGCAGGCCCTCACCCCGGCTCCACCCGGCAGGCTGTGGACTGGTGGAGCCTGGGCATCTTGCTCTTCGAGCTGCTGACGGGGGCCTCGCCCTTCACCCTGGAGGGCGAGAGGAACACGCAGGCTGAGGTGTCTCGGTGAGTAGGGCTGGACGTGGAGGGCGGCCAGAGGGCTGCAGGGCCTGCCTGGGCAGGGCTGTGGGTGGGGGGCTTGCTGCCCCTGACACCCCCCCAATCCTCCCAGACGGATCCTGAAGTGCTCCCCTCCCTTCCCCCCTCGGATCGGGCCCGTGGCGCAGGACCTGCTGCAGCGGCTGCTTTGTAAGGATCCTAAGAAGCGATTGGGCGCGGGGCCCCAGGGGGCACAAGAAGTCCGGAACCATCCCTTCTTCCAGGTGAGGCTGACTCAGGGCCCCATACCTCCTGGTGCATACCCAGGTGGGGCTGCTGTTCCAGGTTGAGGTTGTGCCTGGCCAGTTTCACTTTATTTGGAAATCCCCCCAGAGAAAGAAAGCAAGTGTGTGTCAGCTAGGTTTCTCTTCACATCCATCCCCACTGAAACTTGGCAGATGTGTTCCTGAAAGAAAGGATTCTAGGTTCATTGGCTGTTGGGGCTGTCAGGGATTTGAGAATGGATTGGTCGGTCCTTTCACTGGACAGACCCAGAGAAGGCAGGTGACCTGCCCCCGACGGCACAGTAAATGGTGCCGAGTTGGGAATAGACCTTGGGTCTAGATAGATCTCCTGCTGGTCCAAATCAGTACGGAAACCCACACTTATGGCTTTTAGCACCCACCCAGGCATTTTGTTCTTTGTCCCCGTCCCTGTACAGTCTGTGTGCCTGTCATTCAGATGGACGGTTGATCAGCACACATGGGTGTTTGCTCACTTGTTAGGAGCACACACATGTTAGAGTGCAGTGCAGAGTGAATCTGGCCATG	-			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			660	212	1131	0	ENST00000334205.4:c.630_906+548del		p.X210_splice	ENST00000334205	NM_003942.2	210																																																																																
KDM5A	5927	MSKCC	GRCh37	12	464401	464401	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			583	190	898	0	ENST00000399788.2:c.793A>T	p.Arg265Ter	p.R265*	ENST00000399788	NM_001042603.1	265	Aga/Tga																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022526	12022526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			571	206	968	1	ENST00000396373.4:c.632G>T	p.Arg211Leu	p.R211L	ENST00000396373	NM_001987.4	211	cGc/cTc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859039	57859039	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			611	246	1161	0	ENST00000228682.2:c.534+1G>T		p.X178_splice	ENST00000228682	NM_005269.2	178																																																																																
BRCA2	675	MSKCC	GRCh37	13	32911809	32911809	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			386	236	1018	1	ENST00000380152.3:c.3317G>T	p.Ser1106Ile	p.S1106I	ENST00000380152		1106	aGc/aTc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73336167	73336167	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs541536936		P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			213	126	601	1	ENST00000377767.4:c.2236C>A	p.Arg746Ser	p.R746S	ENST00000377767	NM_014953.3	746	Cgc/Agc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807840	3807840	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			520	198	845	2	ENST00000262367.5:c.3579G>T	p.Met1193Ile	p.M1193I	ENST00000262367	NM_004380.2	1193	atG/atT																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39576644	39576644	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			318	104	932	0	ENST00000262039.4:c.934G>C	p.Glu312Gln	p.E312Q	ENST00000262039	NM_002647.2	312	Gaa/Caa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600335	10600335	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			317	233	1009	2	ENST00000171111.5:c.1520del	p.Arg507GlnfsTer25	p.R507Qfs*25	ENST00000171111	NM_203500.1	507	cGa/ca																																																																															
ALK	238	MSKCC	GRCh37	2	29519767	29519767	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1165866210		P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			602	204	1005	2	ENST00000389048.3:c.1804G>A	p.Asp602Asn	p.D602N	ENST00000389048	NM_004304.4	602	Gat/Aat																																																																															
CUL3	8452	MSKCC	GRCh37	2	225449714	225449714	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			273	135	690	2	ENST00000264414.4:c.13A>T	p.Ser5Cys	p.S5C	ENST00000264414	NM_003590.4	5	Agc/Tgc																																																																															
ATR	545	MSKCC	GRCh37	3	142232476	142232476	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			337	154	717	0	ENST00000350721.4:c.4508G>T	p.Arg1503Leu	p.R1503L	ENST00000350721	NM_001184.3	1503	cGa/cTa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808973	1808973	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			332	76	756	0	ENST00000260795.2:c.2405G>C	p.Gly802Ala	p.G802A	ENST00000260795		802	gGg/gCg																																																																															
KIT	3815	MSKCC	GRCh37	4	55573337	55573337	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs767936896		P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			451	196	981	0	ENST00000288135.5:c.999G>C	p.Leu333Phe	p.L333F	ENST00000288135	NM_000222.2	333	ttG/ttC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539027	187539027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			588	256	1056	0	ENST00000441802.2:c.8713G>T	p.Asp2905Tyr	p.D2905Y	ENST00000441802	NM_005245.3	2905	Gat/Tat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539512	187539512	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			521	183	843	0	ENST00000441802.2:c.8228del	p.Pro2743GlnfsTer10	p.P2743Qfs*10	ENST00000441802	NM_005245.3	2743	cCa/ca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540998	187540998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			401	161	726	2	ENST00000441802.2:c.6742C>A	p.Pro2248Thr	p.P2248T	ENST00000441802	NM_005245.3	2248	Ccg/Acg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149505040	149505040	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs771835513		P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			334	322	922	1	ENST00000261799.4:c.1775C>A	p.Thr592Lys	p.T592K	ENST00000261799	NM_002609.3	592	aCg/aAg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287251	33287251	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			599	123	934	0	ENST00000374542.5:c.1846G>C	p.Gly616Arg	p.G616R	ENST00000374542	NM_001141970.1	616	Ggc/Cgc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004729	150004729	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			336	274	869	0	ENST00000253339.5:c.1496A>C	p.Lys499Thr	p.K499T	ENST00000253339		499	aAa/aCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242454	55242454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			547	201	990	0	ENST00000275493.2:c.2224G>T	p.Val742Phe	p.V742F	ENST00000275493	NM_005228.3	742	Gtc/Ttc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141572669	141572669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			555	161	1045	0	ENST00000220592.5:c.401G>T	p.Trp134Leu	p.W134L	ENST00000220592	NM_012154.3	134	tGg/tTg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797217	135797217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			343	130	546	1	ENST00000298552.3:c.652G>A	p.Glu218Lys	p.E218K	ENST00000298552	NM_001162426.1	218	Gaa/Aaa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139404395	139404395	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			630	260	1237	0	ENST00000277541.6:c.2759del	p.Gly920AlafsTer259	p.G920Afs*259	ENST00000277541	NM_017617.3	920	gGc/gc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932338	39932338	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			219	130	732	0	ENST00000378444.4:c.2261G>T	p.Arg754Leu	p.R754L	ENST00000378444	NM_001123385.1	754	cGt/cTt																																																																															
ALK	238	MSKCC	GRCh37	2	29456492	29456494	+	missense_variant	Missense_Mutation	ONP	CTG	CTG	TTT			P-0008938-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			758	378	1246	0	ENST00000389048.3:c.2424_2426delinsAAA	p.Asn808_Arg809delinsLysLys	p.N808_R809delinsKK	ENST00000389048	NM_004304.4	808	aaCAGa/aaAAAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	210	287	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FH	2271	MSKCC	GRCh37	1	241661205	241661205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	158	382	0	ENST00000366560.3:c.1456G>T	p.Ala486Ser	p.A486S	ENST00000366560	NM_000143.3	486	Gct/Tct																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391102	89391102	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	157	383	0	ENST00000336596.2:c.1168A>G	p.Thr390Ala	p.T390A	ENST00000336596	NM_005233.5	390	Acc/Gcc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520549	176520549	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	144	315	0	ENST00000292408.4:c.1394A>T	p.Asp465Val	p.D465V	ENST00000292408	NM_213647.1	465	gAc/gTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341124	8341124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	235	403	0	ENST00000356435.5:c.5092G>C	p.Asp1698His	p.D1698H	ENST00000356435		1698	Gat/Cat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341142	8341142	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	239	376	2	ENST00000356435.5:c.5074C>A	p.Arg1692Ser	p.R1692S	ENST00000356435		1692	Cgt/Agt																																																																															
ATM	472	MSKCC	GRCh37	11	108224597	108224597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	219	270	0	ENST00000278616.4:c.8776G>T	p.Val2926Phe	p.V2926F	ENST00000278616	NM_000051.3	2926	Gtc/Ttc																																																																															
XIAP	331	MSKCC	GRCh37	X	123020345	123020345	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	84	309	0	ENST00000355640.3:c.833C>A	p.Ser278Ter	p.S278*	ENST00000355640		278	tCa/tAa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207061	1207064	+	protein_altering_variant	In_Frame_Del	DEL	TGAT	TGAT	C			P-0008947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	281	349	0	ENST00000326873.7:c.149_152delinsC	p.Leu50_Met51delinsPro	p.L50_M51delinsP	ENST00000326873	NM_000455.4	50	cTGATg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			36	202	377	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231696	66231696	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	138	573	0	ENST00000273854.3:c.2004G>C	p.Lys668Asn	p.K668N	ENST00000273854	NM_004439.5	668	aaG/aaC																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244194	153244194	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	367	585	1	ENST00000281708.4:c.1963G>T	p.Glu655Ter	p.E655*	ENST00000281708	NM_033632.3	655	Gaa/Taa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041717	14041717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	131	556	0	ENST00000311895.7:c.2264C>T	p.Pro755Leu	p.P755L	ENST00000311895	NM_005236.2	755	cCc/cTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602878	10602878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	142	413	0	ENST00000171111.5:c.700C>T	p.Arg234Trp	p.R234W	ENST00000171111	NM_203500.1	234	Cgg/Tgg																																																																															
CDK6	1021	MSKCC	GRCh37	7	92354977	92354977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	71	288	0	ENST00000265734.4:c.500C>T	p.Ala167Val	p.A167V	ENST00000265734	NM_001259.6	167	gCc/gTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0004343-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	442	288	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs985033810		P-0004343-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			274	218	324	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38953165	38953165	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004343-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			385	277	286	0	ENST00000357387.3:c.2819T>G	p.Leu940Arg	p.L940R	ENST00000357387	NM_152756.3	940	cTc/cGc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176662822	176662822	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0004343-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			428	195	256	0	ENST00000439151.2:c.3797C>G	p.Ala1266Gly	p.A1266G	ENST00000439151	NM_022455.4	1266	gCt/gGt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95571540	95571540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004343-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			761	115	330	0	ENST00000343455.3:c.3137C>T	p.Ser1046Leu	p.S1046L	ENST00000343455	NM_177438.2	1046	tCa/tTa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974675	21974675	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0004343-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			268	254	357	0	ENST00000304494.5:c.150+2T>G		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																																
MALT1	10892	MSKCC	GRCh37	18	56401597	56401597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004343-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			268	246	333	0	ENST00000348428.3:c.1459G>A	p.Val487Met	p.V487M	ENST00000348428	NM_006785.3	487	Gtg/Atg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207065	1207065	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007130-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			371	197	328	0	ENST00000326873.7:c.157del	p.Asp53ThrfsTer11	p.D53Tfs*11	ENST00000326873	NM_000455.4	51	atG/at																																																																															
FLT3	2322	MSKCC	GRCh37	13	28602354	28602354	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007130-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			352	193	273	0	ENST00000241453.7:c.2014G>C	p.Glu672Gln	p.E672Q	ENST00000241453	NM_004119.2	672	Gag/Cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0007130-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			393	354	218	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600425	10600425	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007130-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			340	209	350	0	ENST00000171111.5:c.1430G>T	p.Gly477Val	p.G477V	ENST00000171111	NM_203500.1	477	gGc/gTc																																																																															
RET	5979	MSKCC	GRCh37	10	43610120	43610120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007130-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			518	97	362	0	ENST00000355710.3:c.2072G>T	p.Gly691Val	p.G691V	ENST00000355710	NM_020975.4	691	gGt/gTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101925	11101925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007130-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			321	209	401	0	ENST00000344626.4:c.1345G>A	p.Glu449Lys	p.E449K	ENST00000344626	NM_003072.3	449	Gag/Aag																																																																															
FLT3	2322	MSKCC	GRCh37	13	28602363	28602363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007130-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			362	194	272	0	ENST00000241453.7:c.2005G>A	p.Gly669Arg	p.G669R	ENST00000241453	NM_004119.2	669	Gga/Aga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097609	11097773	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGACCCTCGGGCGTGCCCCCCGGGATGCCAGGCCAGCCTCCTGGAGGGCCTCCCAAGCCCTGGCCTGAAGGTGAGCTCCCTCTTCTATGGTGGTGCACCCGTGCCCTTACTCCCCATCTCAAGCTTGGGTCCTTGAGATGAGCTTTGTCAGGGAGAAAGGGCCG	AGGACCCTCGGGCGTGCCCCCCGGGATGCCAGGCCAGCCTCCTGGAGGGCCTCCCAAGCCCTGGCCTGAAGGTGAGCTCCCTCTTCTATGGTGGTGCACCCGTGCCCTTACTCCCCATCTCAAGCTTGGGTCCTTGAGATGAGCTTTGTCAGGGAGAAAGGGCCG	-			P-0007130-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			267	94	313	0	ENST00000344626.4:c.792_859+97del		p.X264_splice	ENST00000344626	NM_003072.3	264																																																																																
HLA-A	3105	MSKCC	GRCh37	6	29910495	29910531	+	splice_region_variant,intron_variant	Splice_Region	DEL	ACGAGGGTCGGGCAGGTCTCAGCCACTGCTCGCCCCC	ACGAGGGTCGGGCAGGTCTCAGCCACTGCTCGCCCCC	-			P-0007130-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			324	33	199	0	ENST00000376809.5:c.74-38_74-2del		p.X25_splice	ENST00000376809	NM_002116.7	25																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49445811	49445811	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007130-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			675	301	414	0	ENST00000301067.7:c.1655C>G	p.Ser552Cys	p.S552C	ENST00000301067	NM_003482.3	552	tCt/tGt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105618	11105618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007130-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			304	191	376	0	ENST00000344626.4:c.1534G>A	p.Glu512Lys	p.E512K	ENST00000344626	NM_003072.3	512	Gag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11114065	11114065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007130-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			244	141	221	0	ENST00000344626.4:c.1993G>A	p.Glu665Lys	p.E665K	ENST00000344626	NM_003072.3	665	Gag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105633	11105639	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGAGA	AAAGAGA	AAAAAA			P-0007130-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			308	182	365	0	ENST00000344626.4:c.1552_1554delinsAA	p.Glu518LysfsTer95	p.E518Kfs*95	ENST00000344626	NM_003072.3	517	AAAGAGAac/AAAAAAac																																																																															
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0065167-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			194	36	318	0	ENST00000288602.6:c.1742A>T	p.Asn581Ile	p.N581I	ENST00000288602	NM_004333.4	581	aAt/aTt																																																																															
MGA	23269	MSKCC	GRCh37	15	41989090	41989090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065167-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			345	28	486	0	ENST00000219905.7:c.1882C>T	p.Pro628Ser	p.P628S	ENST00000219905	NM_001164273.1	628	Cca/Tca																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239673	53239673	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065167-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			237	49	283	0	ENST00000375401.3:c.1669T>C	p.Phe557Leu	p.F557L	ENST00000375401	NM_004187.3	557	Ttt/Ctt																																																																															
STK11	6794	MSKCC	GRCh37	19	1218445	1218445	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065167-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			395	122	468	0	ENST00000326873.7:c.320A>G	p.His107Arg	p.H107R	ENST00000326873	NM_000455.4	107	cAc/cGc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610197	10610197	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065167-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			538	71	515	0	ENST00000171111.5:c.513C>G	p.Cys171Trp	p.C171W	ENST00000171111	NM_203500.1	171	tgC/tgG																																																																															
AURKA	6790	MSKCC	GRCh37	20	54948521	54948521	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065167-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			338	18	419	0	ENST00000312783.6:c.797C>T	p.Ser266Leu	p.S266L	ENST00000312783	NM_198436.1	266	tCa/tTa																																																																															
MED12	9968	MSKCC	GRCh37	X	70340932	70340932	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065167-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			408	29	237	0	ENST00000374080.3:c.665T>C	p.Leu222Ser	p.L222S	ENST00000374080		222	tTg/tCg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239720	53239720	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065167-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	60	294	0	ENST00000375401.3:c.1622C>A	p.Ala541Glu	p.A541E	ENST00000375401	NM_004187.3	541	gCa/gAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0079451-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			155	39	372	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ATRX	546	MSKCC	GRCh37	X	76938029	76938029	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079451-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			130	8	428	0	ENST00000373344.5:c.2719C>T	p.Arg907Ter	p.R907*	ENST00000373344	NM_000489.3	907	Cga/Tga																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484595	57484595	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079451-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	63	385	0	ENST00000371085.3:c.679C>G	p.Gln227Glu	p.Q227E	ENST00000371085	NM_000516.4	227	Cag/Gag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928074	178928074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079451-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			155	35	342	0	ENST00000263967.3:c.1352G>T	p.Gly451Val	p.G451V	ENST00000263967	NM_006218.2	451	gGa/gTa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079451-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			148	10	352	0	ENST00000250448.2:c.781del	p.Arg261AlafsTer60	p.R261Afs*60	ENST00000250448	NM_004496.3	261	Cgc/gc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178658	56178659	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079451-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			189	63	340	0	ENST00000399503.3:c.3635dup	p.Asn1212LysfsTer27	p.N1212Kfs*27	ENST00000399503	NM_005921.1	1211	gaa/gAaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56174879	56174879	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079451-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			176	49	333	0	ENST00000399503.3:c.2038del	p.Leu680SerfsTer5	p.L680Sfs*5	ENST00000399503	NM_005921.1	680	Ctc/tc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519968		P-0080744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	86	408	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254957	16254957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	107	456	0	ENST00000375759.3:c.2222C>T	p.Pro741Leu	p.P741L	ENST00000375759	NM_015001.2	741	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0081281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	46	283	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	71	300	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685287	89685287	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs398123316		P-0081281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	10	227	0	ENST00000371953.3:c.182A>G	p.His61Arg	p.H61R	ENST00000371953	NM_000314.4	61	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578412	7578412	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519747		P-0081281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	55	354	0	ENST00000269305.4:c.518T>A	p.Val173Glu	p.V173E	ENST00000269305	NM_001126112.2	173	gTg/gAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685305	89685305	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0081281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	26	219	0	ENST00000371953.3:c.200T>A	p.Ile67Lys	p.I67K	ENST00000371953	NM_000314.4	67	aTa/aAa																																																																															
APC	324	MSKCC	GRCh37	5	112175842	112175843	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0081281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	52	382	1	ENST00000257430.4:c.4554dup	p.Asp1519ArgfsTer14	p.D1519Rfs*14	ENST00000257430	NM_000038.5	1517	-/A																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0081281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	40	250	0	ENST00000304494.5:c.457+1G>T		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																																
TBX3	6926	MSKCC	GRCh37	12	115109762	115109762	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			823	77	559	0	ENST00000257566.3:c.2116T>G	p.Leu706Val	p.L706V	ENST00000257566	NM_016569.3	706	Ttg/Gtg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023559	27023560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			684	74	446	0	ENST00000324856.7:c.671dup	p.Pro225AlafsTer175	p.P225Afs*175	ENST00000324856	NM_006015.4	222	tac/taCc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806119	1806119	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931614		P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			789	106	485	0	ENST00000260795.2:c.1138G>A	p.Gly380Arg	p.G380R	ENST00000260795		380	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			740	262	620	0	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			776	165	516	4	ENST00000331920.6:c.3921del	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
ATM	472	MSKCC	GRCh37	11	108216476	108216477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			420	65	266	0	ENST00000278616.4:c.8432dup	p.Ser2812ValfsTer3	p.S2812Vfs*3	ENST00000278616	NM_000051.3	2809	caa/cAaa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299048	15299048	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs114207045		P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			442	171	369	0	ENST00000263388.2:c.1490C>T	p.Ser497Leu	p.S497L	ENST00000263388	NM_000435.2	497	tCg/tTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057937	27057937	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			904	203	573	0	ENST00000324856.7:c.1650del	p.Tyr551ThrfsTer68	p.Y551Tfs*68	ENST00000324856	NM_006015.4	549	Ccc/cc																																																																															
MPL	4352	MSKCC	GRCh37	1	43805713	43805713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913611		P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			680	172	446	0	ENST00000372470.3:c.769C>T	p.Arg257Cys	p.R257C	ENST00000372470	NM_005373.2	257	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			900	246	572	0	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6035204	6035207	+	frameshift_variant	Frame_Shift_Del	DEL	CTGT	CTGT	-	rs267608154		P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			914	75	445	0	ENST00000265849.7:c.861_864del	p.Arg287SerfsTer19	p.R287Sfs*19	ENST00000265849	NM_000535.5	287	agACAG/ag																																																																															
JAK2	3717	MSKCC	GRCh37	9	5066767	5066768	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			409	33	253	0	ENST00000381652.3:c.1310dup	p.Leu437PhefsTer12	p.L437Ffs*12	ENST00000381652	NM_004972.3	435	tat/taTt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31466354	31466354	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376262500		P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			779	52	372	0	ENST00000344624.3:c.2401C>T	p.Arg801Cys	p.R801C	ENST00000344624		801	Cgc/Tgc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31381401	31381401	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs201681031		P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			390	95	283	0	ENST00000328111.2:c.1126G>A	p.Glu376Lys	p.E376K	ENST00000328111	NM_006892.3	376	Gag/Aag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31504699	31504699	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1032572786		P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			837	140	364	1	ENST00000344624.3:c.1631G>A	p.Arg544His	p.R544H	ENST00000344624		544	cGc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157469895	157469895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			808	220	495	0	ENST00000346085.5:c.2689G>A	p.Gly897Arg	p.G897R	ENST00000346085	NM_020732.3	897	Gga/Aga																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123239388	123239388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144176428		P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			691	71	424	0	ENST00000358487.5:c.2449G>A	p.Gly817Ser	p.G817S	ENST00000358487	NM_000141.4	817	Ggc/Agc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562181	21562181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			797	124	564	0	ENST00000382592.4:c.1738G>A	p.Val580Ile	p.V580I	ENST00000382592	NM_014572.2	580	Gtc/Atc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86670049	86670049	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			438	139	331	0	ENST00000274376.6:c.1846T>C	p.Cys616Arg	p.C616R	ENST00000274376	NM_002890.2	616	Tgt/Cgt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229580	5229580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			455	140	462	0	ENST00000357368.4:c.2271G>T	p.Gln757His	p.Q757H	ENST00000357368	NM_002850.3	757	caG/caT																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526597	31526597	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			755	129	382	0	ENST00000344624.3:c.443del	p.Pro148LeufsTer78	p.P148Lfs*78	ENST00000344624		148	cCt/ct																																																																															
XIAP	331	MSKCC	GRCh37	X	123020314	123020314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			601	63	425	0	ENST00000355640.3:c.802C>T	p.Arg268Trp	p.R268W	ENST00000355640		268	Cgg/Tgg																																																																															
IDH2	3418	MSKCC	GRCh37	15	90630754	90630754	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			738	71	522	0	ENST00000330062.3:c.732G>A	p.Trp244Ter	p.W244*	ENST00000330062	NM_002168.2	244	tgG/tgA																																																																															
POLD1	5424	MSKCC	GRCh37	19	50921178	50921178	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060501837		P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			553	131	433	0	ENST00000440232.2:c.3298G>A	p.Gly1100Arg	p.G1100R	ENST00000440232	NM_002691.3	1100	Gga/Aga																																																																															
RB1	5925	MSKCC	GRCh37	13	48937013	48937013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			596	81	373	0	ENST00000267163.4:c.781G>A	p.Ala261Thr	p.A261T	ENST00000267163	NM_000321.2	261	Gca/Aca																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713816	30713816	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			669	238	567	0	ENST00000359013.4:c.1217del	p.Lys406ArgfsTer7	p.K406Rfs*7	ENST00000359013	NM_001024847.2	406	Aag/ag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343577	118343577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			688	323	628	0	ENST00000534358.1:c.1703C>T	p.Pro568Leu	p.P568L	ENST00000534358	NM_005933.3	568	cCa/cTa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153252002	153252002	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			561	58	355	0	ENST00000281708.4:c.1004A>G	p.His335Arg	p.H335R	ENST00000281708	NM_033632.3	335	cAc/cGc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2130220	2130220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			962	71	548	0	ENST00000219476.3:c.3452G>A	p.Gly1151Asp	p.G1151D	ENST00000219476	NM_000548.3	1151	gGc/gAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157454333	157454333	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs138934947		P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			581	160	379	0	ENST00000346085.5:c.2543G>T	p.Gly848Val	p.G848V	ENST00000346085	NM_020732.3	848	gGa/gTa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828047	72828047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			904	73	502	0	ENST00000268489.5:c.8534C>T	p.Thr2845Ile	p.T2845I	ENST00000268489	NM_006885.3	2845	aCc/aTc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125503118	125503118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			637	88	366	0	ENST00000428830.2:c.485G>A	p.Arg162His	p.R162H	ENST00000428830	NM_001114121.2	162	cGt/cAt																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871710	35871710	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			549	207	492	0	ENST00000216797.5:c.796C>T	p.Gln266Ter	p.Q266*	ENST00000216797	NM_020529.2	266	Cag/Tag																																																																															
TSC1	7248	MSKCC	GRCh37	9	135798765	135798765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			695	53	362	0	ENST00000298552.3:c.478C>A	p.Arg160Ser	p.R160S	ENST00000298552	NM_001162426.1	160	Cgt/Agt																																																																															
NF1	4763	MSKCC	GRCh37	17	29490271	29490272	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			511	147	397	0	ENST00000358273.4:c.360dup	p.Leu121SerfsTer6	p.L121Sfs*6	ENST00000358273	NM_001042492.2	119	cat/caTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041611	47041611	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			859	103	586	0	ENST00000329236.7:c.1602G>T	p.Arg534Ser	p.R534S	ENST00000329236	NM_001204466.1	534	agG/agT																																																																															
MLH1	4292	MSKCC	GRCh37	3	37090394	37090394	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			457	164	354	0	ENST00000231790.2:c.1990-1G>C		p.X664_splice	ENST00000231790	NM_000249.3	664																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89462417	89462417	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			441	67	332	0	ENST00000336596.2:c.1888+1G>A		p.X630_splice	ENST00000336596	NM_005233.5	630																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11144110	11144110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			583	210	510	0	ENST00000344626.4:c.3691G>A	p.Ala1231Thr	p.A1231T	ENST00000344626	NM_003072.3	1231	Gcc/Acc																																																																															
MGA	23269	MSKCC	GRCh37	15	41961613	41961613	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			648	98	472	0	ENST00000219905.7:c.521T>C	p.Val174Ala	p.V174A	ENST00000219905	NM_001164273.1	174	gTa/gCa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25457230	25457230	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082463-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			509	224	438	0	ENST00000264709.3:c.2657A>G	p.Gln886Arg	p.Q886R	ENST00000264709	NM_175629.2	886	cAg/cGg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913400		P-0082463-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			288	200	416	0	ENST00000349496.5:c.98C>A	p.Ser33Tyr	p.S33Y	ENST00000349496	NM_001904.3	33	tCt/tAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435767	49435767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082463-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			492	237	450	0	ENST00000301067.7:c.6116C>T	p.Ser2039Leu	p.S2039L	ENST00000301067	NM_003482.3	2039	tCa/tTa																																																																															
APC	324	MSKCC	GRCh37	5	112173317	112173317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082463-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			440	177	392	0	ENST00000257430.4:c.2026A>G	p.Ile676Val	p.I676V	ENST00000257430	NM_000038.5	676	Ata/Gta																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs869025608		P-0082493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	105	318	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																															
STK11	6794	MSKCC	GRCh37	19	1207065	1207065	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	104	387	0	ENST00000326873.7:c.157del	p.Asp53ThrfsTer11	p.D53Tfs*11	ENST00000326873	NM_000455.4	51	atG/at																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599878	10599878	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	25	358	0	ENST00000171111.5:c.1698C>G	p.Ile566Met	p.I566M	ENST00000171111	NM_203500.1	566	atC/atG																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430753	78430753	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0082493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	111	366	0	ENST00000370768.2:c.636G>T	p.Gln212His	p.Q212H	ENST00000370768	NM_003902.3	212	caG/caT																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			52	18	374	2	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982155	201982155	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0082539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	25	458	0	ENST00000359651.3:c.679T>G	p.Phe227Val	p.F227V	ENST00000359651		227	Ttc/Gtc																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538882	23538882	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	11	380	0	ENST00000380871.4:c.557C>G	p.Ser186Trp	p.S186W	ENST00000380871	NM_006167.3	186	tCg/tGg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1632338	1632338	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	84	344	0	ENST00000344749.5:c.212C>G	p.Pro71Arg	p.P71R	ENST00000344749	NM_001136139.2	71	cCc/cGc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0082570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	186	256	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CIC	23152	MSKCC	GRCh37	19	42796717	42796717	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0082570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	231	440	0	ENST00000575354.2:c.3176-1G>C		p.X1059_splice	ENST00000575354	NM_015125.3	1059																																																																																
INSR	3643	MSKCC	GRCh37	19	7170584	7170584	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757634971		P-0082570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	177	315	0	ENST00000302850.5:c.1447G>A	p.Asp483Asn	p.D483N	ENST00000302850	NM_000208.2	483	Gac/Aac																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80412509	80412509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	255	365	0	ENST00000286548.4:c.532G>A	p.Asp178Asn	p.D178N	ENST00000286548	NM_002072.3	178	Gat/Aat																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7984247	7984247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	259	441	0	ENST00000319144.4:c.482G>T	p.Ser161Ile	p.S161I	ENST00000319144	NM_001139.2	161	aGt/aTt																																																																															
TERT	7015	MSKCC	GRCh37	5	1293584	1293584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	200	420	0	ENST00000310581.5:c.1417G>A	p.Val473Met	p.V473M	ENST00000310581	NM_198253.2	473	Gtg/Atg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37665979	37665979	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0082574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	125	260	0	ENST00000447079.4:c.2634del	p.Phe878LeufsTer31	p.F878Lfs*31	ENST00000447079	NM_015083.1	877	gaT/ga																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515235	31515235	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0082574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	46	369	0	ENST00000344624.3:c.1150T>G	p.Tyr384Asp	p.Y384D	ENST00000344624		384	Tat/Gat																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720808	89720808	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	19	123	0	ENST00000371953.3:c.959T>C	p.Leu320Ser	p.L320S	ENST00000371953	NM_000314.4	320	tTa/tCa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46267781	46267781	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs755361920		P-0082575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	86	360	0	ENST00000371998.3:c.2542A>G	p.Ile848Val	p.I848V	ENST00000371998		848	Att/Gtt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0082610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	90	364	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578447	+	frameshift_variant	Frame_Shift_Del	DEL	GCTTGTAGATG	GCTTGTAGATG	-			P-0082610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	191	570	0	ENST00000269305.4:c.483_493del	p.Ile162ValfsTer15	p.I162Vfs*15	ENST00000269305	NM_001126112.2	161	gcCATCTACAAGCag/gcag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0082521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	19	327	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0082521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	25	396	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112173801	112173801	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs79512956		P-0082521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	48	306	0	ENST00000257430.4:c.2510C>A	p.Ser837Ter	p.S837*	ENST00000257430	NM_000038.5	837	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs587782082		P-0082521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	107	319	0	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112154997	112154997	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0082521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	24	329	0	ENST00000257430.4:c.1268G>A	p.Trp423Ter	p.W423*	ENST00000257430	NM_000038.5	423	tGg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0082521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	10	218	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411567	63411568	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0082521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	26	214	0	ENST00000330258.3:c.1599dup	p.Glu534Ter	p.E534*	ENST00000330258	NM_152424.3	533	-/T																																																																															
NF1	4763	MSKCC	GRCh37	17	29585443	29585443	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	70	304	0	ENST00000358273.4:c.4255G>T	p.Val1419Phe	p.V1419F	ENST00000358273	NM_001042492.2	1419	Gtc/Ttc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55146578	55146578	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	62	334	0	ENST00000257290.5:c.2252T>C	p.Val751Ala	p.V751A	ENST00000257290	NM_006206.4	751	gTt/gCt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910376	29910378	+	frameshift_variant	Frame_Shift_Del	DEL	GCC	GCC	CT			P-0082521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	31	499	0	ENST00000376809.5:c.46_48delinsCT	p.Ala16LeufsTer4	p.A16Lfs*4	ENST00000376809	NM_002116.7	16	GCC/CT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0082523-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	516	364	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48651591	48651591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082523-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	258	189	0	ENST00000376670.3:c.757C>T	p.Arg253Trp	p.R253W	ENST00000376670	NM_002049.3	253	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0082523-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	72	199	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47491282	47491282	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0082523-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	207	251	0	ENST00000404338.3:c.3863A>C	p.Asn1288Thr	p.N1288T	ENST00000404338	NM_004491.4	1288	aAc/aCc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47635603	47635603	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0082523-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	111	265	0	ENST00000233146.2:c.275T>G	p.Leu92Arg	p.L92R	ENST00000233146	NM_000251.2	92	cTt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68835746	68835746	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0082525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	84	447	0	ENST00000261769.5:c.339del	p.Val114SerfsTer3	p.V114Sfs*3	ENST00000261769	NM_004360.3	113	Aaa/aa																																																																															
BARD1	580	MSKCC	GRCh37	2	215595218	215595218	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	77	294	0	ENST00000260947.4:c.1918C>G	p.Leu640Val	p.L640V	ENST00000260947	NM_000465.2	640	Cta/Gta																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974759	21974759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	545	533	0	ENST00000304494.5:c.68G>T	p.Gly23Val	p.G23V	ENST00000304494	NM_000077.4	23	gGt/gTt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39283895	39283895	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761951846		P-0082584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	150	364	0	ENST00000402219.2:c.458G>A	p.Arg153Gln	p.R153Q	ENST00000402219	NM_005633.3	153	cGg/cAg																																																																															
POT1	25913	MSKCC	GRCh37	7	124493098	124493098	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0082584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	233	358	0	ENST00000357628.3:c.797A>C	p.His266Pro	p.H266P	ENST00000357628	NM_015450.2	266	cAt/cCt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978378	2978378	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0082584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	347	471	0	ENST00000396946.4:c.952G>T	p.Glu318Ter	p.E318*	ENST00000396946	NM_032415.4	318	Gag/Tag																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260136	149260136	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0082584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	166	398	0	ENST00000360632.3:c.757G>T	p.Glu253Ter	p.E253*	ENST00000360632	NM_015472.4	253	Gag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790045	40790045	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			950	207	512	0	ENST00000373198.4:c.2686C>G	p.His896Asp	p.H896D	ENST00000373198	NM_133170.3	896	Cac/Gac																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761154	59761154	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0082584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	424	462	0	ENST00000259008.2:c.3253A>T	p.Arg1085Ter	p.R1085*	ENST00000259008	NM_032043.2	1085	Aga/Tga																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33680950	33680950	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	157	450	0	ENST00000308377.4:c.1327A>G	p.Arg443Gly	p.R443G	ENST00000308377	NM_152270.3	443	Aga/Gga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176696672	176696672	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	429	454	0	ENST00000439151.2:c.5375del	p.Gly1792GlufsTer29	p.G1792Efs*29	ENST00000439151	NM_022455.4	1791	gtG/gt																																																																															
B2M	567	MSKCC	GRCh37	15	45003749	45003752	+	frameshift_variant	Frame_Shift_Del	DEL	CTCG	CTCG	-			P-0082584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	150	459	0	ENST00000558401.1:c.8_11del	p.Arg3ProfsTer4	p.R3Pfs*4	ENST00000558401	NM_004048.2	2	tCTCGc/tc																																																																															
ATRX	546	MSKCC	GRCh37	X	76778753	76778753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	205	242	0	ENST00000373344.5:c.6826G>A	p.Ala2276Thr	p.A2276T	ENST00000373344	NM_000489.3	2276	Gct/Act																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391974	139391974	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	214	506	0	ENST00000277541.6:c.6217A>G	p.Ser2073Gly	p.S2073G	ENST00000277541	NM_017617.3	2073	Agc/Ggc																																																																															
POT1	25913	MSKCC	GRCh37	7	124493039	124493039	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	196	307	0	ENST00000357628.3:c.856G>T	p.Asp286Tyr	p.D286Y	ENST00000357628	NM_015450.2	286	Gat/Tat																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39573276	39573276	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	298	327	0	ENST00000262039.4:c.757G>T	p.Val253Leu	p.V253L	ENST00000262039	NM_002647.2	253	Gtg/Ttg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61712965	61712965	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	132	440	0	ENST00000401558.2:c.2446A>G	p.Thr816Ala	p.T816A	ENST00000401558	NM_003400.3	816	Aca/Gca																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45864865	45864865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	585	645	0	ENST00000391945.4:c.1154C>T	p.Thr385Ile	p.T385I	ENST00000391945	NM_000400.3	385	aCt/aTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945087	151945087	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	29	209	0	ENST00000262189.6:c.2432T>C	p.Ile811Thr	p.I811T	ENST00000262189	NM_170606.2	811	aTc/aCc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411111	63411111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	195	274	0	ENST00000330258.3:c.2056C>T	p.Pro686Ser	p.P686S	ENST00000330258	NM_152424.3	686	Ccc/Tcc																																																																															
BTK	695	MSKCC	GRCh37	X	100611779	100611779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	56	148	0	ENST00000308731.7:c.1342G>A	p.Val448Ile	p.V448I	ENST00000308731	NM_000061.2	448	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112173533	112173534	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	T			P-0082584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	436	501	0	ENST00000257430.4:c.2242_2243delinsT	p.Leu749CysfsTer12	p.L749Cfs*12	ENST00000257430	NM_000038.5	748	AGc/Tc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1424958105		P-0018487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	80	391	1	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46205238	46205238	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	107	446	0	ENST00000334344.6:c.322G>T	p.Glu108Ter	p.E108*	ENST00000334344	NM_152641.2	108	Gag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045430	47045607	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCCCAACATTCACATACACATACAAACTTTCAGCAAATGAAGTACCGGGACCGTGCAGCTGAACGCAGAGAAAAGTATGGCATCCCCGAGCCGCCAGAGCCCAAGAGGAGGAAGTACGGCGGCATATCCACAGCCTCTGTGTGAGTGGCTGGGCCAGGTGAGGGGGTCTGGAGCCCG	TCCCCAACATTCACATACACATACAAACTTTCAGCAAATGAAGTACCGGGACCGTGCAGCTGAACGCAGAGAAAAGTATGGCATCCCCGAGCCGCCAGAGCCCAAGAGGAGGAAGTACGGCGGCATATCCACAGCCTCTGTGTGAGTGGCTGGGCCAGGTGAGGGGGTCTGGAGCCCG	-			P-0018487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	43	323	0	ENST00000329236.7:c.2197-34_2303+37del		p.X733_splice	ENST00000329236	NM_001204466.1	733																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931589		P-0082260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	74	485	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513264	106513264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	149	428	1	ENST00000359195.3:c.2168G>A	p.Gly723Asp	p.G723D	ENST00000359195	NM_002649.2	723	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0082366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	200	419	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696450	47696450	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0082366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	185	429	0	ENST00000347630.2:c.373T>G	p.Phe125Val	p.F125V	ENST00000347630	NM_001007230.1	125	Ttt/Gtt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923059	39923059	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0082475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	136	154	0	ENST00000378444.4:c.3649C>T	p.Arg1217Ter	p.R1217*	ENST00000378444	NM_001123385.1	1217	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437606	56437606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886926322		P-0082475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	64	304	0	ENST00000407977.2:c.856C>T	p.Arg286Trp	p.R286W	ENST00000407977		286	Cgg/Tgg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983059	201983060	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0082475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			838	70	326	0	ENST00000359651.3:c.909dup	p.Lys304GlnfsTer167	p.K304Qfs*167	ENST00000359651		303	ttc/ttCc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911615	114911615	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1181251391		P-0082475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	53	264	0	ENST00000543371.1:c.1133C>T	p.Ala378Val	p.A378V	ENST00000543371	NM_001198531.1	378	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0082475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	85	210	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729962	30729962	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs104893819		P-0082475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	181	253	0	ENST00000359013.4:c.1558C>T	p.Arg520Ter	p.R520*	ENST00000359013	NM_001024847.2	520	Cga/Tga																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94224094	94224094	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	91	225	0	ENST00000323929.3:c.58G>C	p.Asp20His	p.D20H	ENST00000323929	NM_005591.3	20	Gat/Cat																																																																															
APLNR	187	MSKCC	GRCh37	11	57003436	57003436	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs369393051		P-0082475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			784	80	404	0	ENST00000257254.3:c.1043C>T	p.Ser348Leu	p.S348L	ENST00000257254		348	tCg/tTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953195	81953195	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs187454354		P-0082531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			708	78	335	0	ENST00000359376.3:c.2161G>A	p.Glu721Lys	p.E721K	ENST00000359376	NM_002661.3	721	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0082531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	78	332	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112175225	112175225	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0082531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	95	338	0	ENST00000257430.4:c.3934G>T	p.Gly1312Ter	p.G1312*	ENST00000257430	NM_000038.5	1312	Gga/Tga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972838	32972838	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0082531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			876	50	385	0	ENST00000380152.3:c.10188T>G	p.Ser3396Arg	p.S3396R	ENST00000380152		3396	agT/agG																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820938	3820938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	34	328	0	ENST00000262367.5:c.2513C>T	p.Pro838Leu	p.P838L	ENST00000262367	NM_004380.2	838	cCt/cTt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395626	45395626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	53	286	0	ENST00000262160.6:c.508G>A	p.Val170Ile	p.V170I	ENST00000262160	NM_005901.5	170	Gtt/Att																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31019437	31019437	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0082533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	43	312	0	ENST00000375687.4:c.939del	p.Phe313LeufsTer53	p.F313Lfs*53	ENST00000375687	NM_015338.5	312	Ttt/tt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913381		P-0082536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	160	428	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782144		P-0082536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	176	505	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38962438	38962438	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs146754529		P-0082536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	93	227	0	ENST00000357387.3:c.1694A>G	p.Tyr565Cys	p.Y565C	ENST00000357387	NM_152756.3	565	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0082536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	137	225	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158401	26158401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1336643443		P-0082536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	61	322	0	ENST00000289316.2:c.4C>T	p.Pro2Ser	p.P2S	ENST00000289316	NM_138720.2	2	Cct/Tct																																																																															
MSH2	4436	MSKCC	GRCh37	2	47643529	47643529	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0082536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	149	330	0	ENST00000233146.2:c.1037T>G	p.Ile346Ser	p.I346S	ENST00000233146	NM_000251.2	346	aTt/aGt																																																																															
ALK	238	MSKCC	GRCh37	2	29551318	29551318	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	154	409	1	ENST00000389048.3:c.1312C>A	p.Gln438Lys	p.Q438K	ENST00000389048	NM_004304.4	438	Cag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445636	49445637	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0082536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			821	202	637	0	ENST00000301067.7:c.1829_1830insA	p.Pro611SerfsTer3	p.P611Sfs*3	ENST00000301067	NM_003482.3	610	cct/ccAt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225422574	225422574	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0082536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	82	191	0	ENST00000264414.4:c.67-1G>A		p.X23_splice	ENST00000264414	NM_003590.4	23																																																																																
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs121913370		P-0044645-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			152	27	232	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135778090	135778090	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs118203673		P-0044645-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			303	59	327	1	ENST00000298552.3:c.2293C>T	p.Gln765Ter	p.Q765*	ENST00000298552	NM_001162426.1	765	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0064840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	31	403	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0064840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	16	421	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	20	252	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144146	11144146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	33	408	0	ENST00000344626.4:c.3727C>T	p.Arg1243Trp	p.R1243W	ENST00000344626	NM_003072.3	1243	Cgg/Tgg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63545693	63545693	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	29	433	0	ENST00000307078.5:c.901G>T	p.Glu301Ter	p.E301*	ENST00000307078	NM_004655.3	301	Gag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0065342-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			1173	59	322	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0065342-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			545	378	229	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0065342-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			503	59	196	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912664		P-0065342-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			405	175	191	0	ENST00000269305.4:c.1010G>C	p.Arg337Pro	p.R337P	ENST00000269305	NM_001126112.2	337	cGc/cCc																																																																															
XIAP	331	MSKCC	GRCh37	X	123020225	123020225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065342-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			480	248	221	0	ENST00000355640.3:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000355640		238	cGa/cAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249092	55249092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065342-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			722	498	317	0	ENST00000275493.2:c.2390G>C	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	tGc/tCc																																																																															
EP300	2033	MSKCC	GRCh37	22	41572904	41572904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065342-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			712	89	280	0	ENST00000263253.7:c.5189C>G	p.Ser1730Cys	p.S1730C	ENST00000263253	NM_001429.3	1730	tCt/tGt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23632738	23632738	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065342-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			597	52	238	0	ENST00000261584.4:c.3058C>A	p.Gln1020Lys	p.Q1020K	ENST00000261584	NM_024675.3	1020	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs786203436		P-0078621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	32	398	0	ENST00000269305.4:c.487T>A	p.Tyr163Asn	p.Y163N	ENST00000269305	NM_001126112.2	163	Tac/Aac																																																																															
EZH2	2146	MSKCC	GRCh37	7	148526880	148526880	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	18	235	0	ENST00000320356.2:c.424G>C	p.Asp142His	p.D142H	ENST00000320356	NM_004456.4	142	Gat/Cat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0081388-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			494	108	404	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81971495	81971495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767605816		P-0081388-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			695	39	542	1	ENST00000359376.3:c.3185C>T	p.Thr1062Met	p.T1062M	ENST00000359376	NM_002661.3	1062	aCg/aTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111467	8111467	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759044265		P-0081388-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			516	30	501	0	ENST00000346208.3:c.953C>T	p.Ala318Val	p.A318V	ENST00000346208		318	gCg/gTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67590416	67590416	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081388-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	39	465	0	ENST00000274335.5:c.1478del	p.Ile493AsnfsTer17	p.I493Nfs*17	ENST00000274335		493	aTa/aa																																																																															
TP63	8626	MSKCC	GRCh37	3	189586488	189586488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081388-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			664	54	503	0	ENST00000264731.3:c.1112G>T	p.Gly371Val	p.G371V	ENST00000264731	NM_003722.4	371	gGt/gTt																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89791152	89791164	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTGAGGCCGCC	AGGTGAGGCCGCC	-			P-0081388-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			365	38	368	0	ENST00000336032.3:c.540+2_540+14del		p.X180_splice	ENST00000336032	NM_006813.2	180																																																																																
SMARCE1	6605	MSKCC	GRCh37	17	38785225	38785225	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0081388-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			554	39	508	0	ENST00000348513.6:c.1048A>T	p.Thr350Ser	p.T350S	ENST00000348513	NM_003079.4	350	Aca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912660		P-0081673-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			496	199	341	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa																																																																															
PARP1	142	MSKCC	GRCh37	1	226568832	226568832	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081673-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			568	86	315	0	ENST00000366794.5:c.1237G>C	p.Glu413Gln	p.E413Q	ENST00000366794	NM_001618.3	413	Gag/Cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0081673-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			48	24	201	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610320	10610320	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081673-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			553	272	374	0	ENST00000171111.5:c.390del	p.Lys131ArgfsTer26	p.K131Rfs*26	ENST00000171111	NM_203500.1	130	ccC/cc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266227	41266227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081673-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			131	97	312	0	ENST00000349496.5:c.224C>A	p.Thr75Asn	p.T75N	ENST00000349496	NM_001904.3	75	aCt/aAt																																																																															
ATRX	546	MSKCC	GRCh37	X	76918870	76918870	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0081673-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			80	66	242	0	ENST00000373344.5:c.4120+1G>C		p.X1374_splice	ENST00000373344	NM_000489.3	1374																																																																																
INHBA	3624	MSKCC	GRCh37	7	41729636	41729636	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081673-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			553	156	387	0	ENST00000242208.4:c.893G>T	p.Arg298Leu	p.R298L	ENST00000242208	NM_002192.2	298	cGg/cTg																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699471	117699471	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081673-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			246	53	251	0	ENST00000369458.3:c.170C>A	p.Thr57Asn	p.T57N	ENST00000369458	NM_024626.3	57	aCt/aAt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779835	3779835	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081673-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	217	312	0	ENST00000262367.5:c.5213A>G	p.His1738Arg	p.H1738R	ENST00000262367	NM_004380.2	1738	cAt/cGt																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871262	35871262	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081673-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			536	129	261	0	ENST00000216797.5:c.911C>G	p.Pro304Arg	p.P304R	ENST00000216797	NM_020529.2	304	cCc/cGc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89337265	89337265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081673-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	106	217	0	ENST00000301030.4:c.7766C>T	p.Ser2589Phe	p.S2589F	ENST00000301030	NM_001256183.1	2589	tCc/tTc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513451	149513451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081673-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			565	152	408	0	ENST00000261799.4:c.752G>T	p.Arg251Leu	p.R251L	ENST00000261799	NM_002609.3	251	cGc/cTc																																																																															
AXL	558	MSKCC	GRCh37	19	41737162	41737162	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081673-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			608	302	357	0	ENST00000301178.4:c.742G>T	p.Gly248Cys	p.G248C	ENST00000301178	NM_021913.4	248	Ggc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877124	151877127	+	missense_variant	Missense_Mutation	ONP	CGGG	CGGG	AGGT			P-0081673-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			418	139	297	0	ENST00000262189.6:c.7234_7237delinsACCT	p.Pro2412_Ala2413delinsThrSer	p.P2412_A2413delinsTS	ENST00000262189	NM_170606.2	2412	CCCGca/ACCTca																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0081755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	68	545	0	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032514	12032514	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0081755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	44	195	0	ENST00000353533.5:c.950T>G	p.Leu317Arg	p.L317R	ENST00000353533	NM_003010.3	317	cTa/cGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0081755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	49	204	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150933115	150933115	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0081755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	67	327	0	ENST00000271640.5:c.2577T>A	p.His859Gln	p.H859Q	ENST00000271640	NM_001145415.1	859	caT/caA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573631	48573631	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0081755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	77	364	0	ENST00000342988.3:c.215T>G	p.Val72Gly	p.V72G	ENST00000342988	NM_005359.5	72	gTt/gGt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2202775	2202775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	71	381	0	ENST00000398665.3:c.784G>A	p.Glu262Lys	p.E262K	ENST00000398665	NM_032482.2	262	Gaa/Aaa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041365	47041392	+	frameshift_variant	Frame_Shift_Del	DEL	CTACCTACCAGTACGATGAGACCTCCGG	CTACCTACCAGTACGATGAGACCTCCGG	-			P-0081755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	89	510	0	ENST00000329236.7:c.1479_1506del	p.Tyr494ThrfsTer123	p.Y494Tfs*123	ENST00000329236	NM_001204466.1	492	tCTACCTACCAGTACGATGAGACCTCCGGc/tc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56875629	56875638	+	frameshift_variant	Frame_Shift_Ins	INS	CTCTCAGAAG	CTCTCAGAAG	AAGAAGCATGGTGG			P-0081755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	68	358	0	ENST00000308159.5:c.2233_2241delinsAAGAAGCATGGTG	p.Leu745LysfsTer18	p.L745Kfs*18	ENST00000308159	NM_014669.4	745	CTCTCAGAAGtg/AAGAAGCATGGTGGtg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624233	89624277	+	frameshift_variant	Frame_Shift_Del	DEL	GCCATCATCAAAGAGATCGTTAGCAGAAACAAAAGGAGATATCAA	GCCATCATCAAAGAGATCGTTAGCAGAAACAAAAGGAGATATCAA	T			P-0081755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	48	113	0	ENST00000371953.3:c.7_51delinsT	p.Ala3Ter	p.A3*	ENST00000371953	NM_000314.4	3	GCCATCATCAAAGAGATCGTTAGCAGAAACAAAAGGAGATATCAA/T																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs28934577		P-0082169-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			428	154	362	0	ENST00000269305.4:c.770T>A	p.Leu257Gln	p.L257Q	ENST00000269305	NM_001126112.2	257	cTg/cAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509853	187509853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748762429		P-0082169-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			833	104	496	0	ENST00000441802.2:c.13660G>A	p.Glu4554Lys	p.E4554K	ENST00000441802	NM_005245.3	4554	Gaa/Aaa																																																																															
EZH1	2145	MSKCC	GRCh37	17	40856686	40856686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082169-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			413	65	260	0	ENST00000428826.2:c.1951G>A	p.Glu651Lys	p.E651K	ENST00000428826		651	Gag/Aag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18963017	18963017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082169-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			907	111	428	0	ENST00000262803.5:c.884G>A	p.Arg295Gln	p.R295Q	ENST00000262803	NM_002911.3	295	cGg/cAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411492	63411492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082169-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			373	123	259	0	ENST00000330258.3:c.1675G>A	p.Glu559Lys	p.E559K	ENST00000330258	NM_152424.3	559	Gaa/Aaa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118352691	118352691	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082169-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			795	232	486	2	ENST00000534358.1:c.3896C>G	p.Ser1299Cys	p.S1299C	ENST00000534358	NM_005933.3	1299	tCc/tGc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066775	30066775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082169-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			766	76	388	0	ENST00000331968.5:c.2356G>A	p.Asp786Asn	p.D786N	ENST00000331968	NM_002742.2	786	Gat/Aat																																																																															
AGO2	27161	MSKCC	GRCh37	8	141569554	141569554	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0082169-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1190	94	368	0	ENST00000220592.5:c.730G>T	p.Glu244Ter	p.E244*	ENST00000220592	NM_012154.3	244	Gaa/Taa																																																																															
NADK	65220	MSKCC	GRCh37	1	1684453	1684453	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751071301		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	133	424	0	ENST00000341426.5:c.1231C>T	p.Arg411Trp	p.R411W	ENST00000341426	NM_023018.4	411	Cgg/Tgg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981163	201981165	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	96	376	0	ENST00000359651.3:c.246_248del	p.Lys82del	p.K82del	ENST00000359651		81	gAGAag/gag																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2491372	2491372	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774857719		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	78	422	0	ENST00000355716.4:c.415C>T	p.Arg139Cys	p.R139C	ENST00000355716	NM_003820.2	139	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101401	27101402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	43	186	0	ENST00000324856.7:c.4689dup	p.Met1564HisfsTer8	p.M1564Hfs*8	ENST00000324856	NM_006015.4	1561	-/C																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	120	376	3	ENST00000342505.4:c.2580dup	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	92	338	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ATM	472	MSKCC	GRCh37	11	108160488	108160488	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs730881369		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	100	262	0	ENST00000278616.4:c.4396C>T	p.Arg1466Ter	p.R1466*	ENST00000278616	NM_000051.3	1466	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374498	118374498	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	153	413	0	ENST00000534358.1:c.7896del	p.Phe2632LeufsTer9	p.F2632Lfs*9	ENST00000534358	NM_005933.3	2631	Ttt/tt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948747	71948748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs760925109		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	79	441	0	ENST00000298229.2:c.3466dup	p.Arg1156ProfsTer59	p.R1156Pfs*59	ENST00000298229	NM_001567.3	1153	-/C																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	99	383	4	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433650	49433650	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs794727549		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	98	448	0	ENST00000301067.7:c.7903C>T	p.Arg2635Ter	p.R2635*	ENST00000301067	NM_003482.3	2635	Cga/Tga																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562141	21562141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373012826		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	148	397	0	ENST00000382592.4:c.1778G>A	p.Arg593His	p.R593H	ENST00000382592	NM_014572.2	593	cGc/cAc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562625	21562625	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1381166851		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	55	298	0	ENST00000382592.4:c.1294G>A	p.Val432Met	p.V432M	ENST00000382592	NM_014572.2	432	Gtg/Atg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32930633	32930633	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55716624		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	113	280	1	ENST00000380152.3:c.7504C>T	p.Arg2502Cys	p.R2502C	ENST00000380152		2502	Cgc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42040979	42040979	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781312897		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	120	424	0	ENST00000219905.7:c.5357G>A	p.Arg1786Gln	p.R1786Q	ENST00000219905	NM_001164273.1	1786	cGg/cAg																																																																															
MGA	23269	MSKCC	GRCh37	15	42052602	42052602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	118	324	0	ENST00000219905.7:c.7273C>T	p.Arg2425Cys	p.R2425C	ENST00000219905	NM_001164273.1	2425	Cgc/Tgc																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	113	357	2	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
CDH1	999	MSKCC	GRCh37	16	68771347	68771348	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs1312011708		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	35	228	0	ENST00000261769.5:c.44_46dup	p.Leu15dup	p.L15dup	ENST00000261769	NM_004360.3	15	gcg/gcGCTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821599	+	inframe_deletion	In_Frame_Del	DEL	GCCGCC	GCCGCC	-	rs760218221		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	42	354	1	ENST00000268489.5:c.10576_10581del	p.Gly3526_Gly3527del	p.G3526_G3527del	ENST00000268489	NM_006885.3	3526	GGCGGC/-																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	98	448	3	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845844	72845844	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760400785		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	100	390	0	ENST00000268489.5:c.3623C>T	p.Ser1208Leu	p.S1208L	ENST00000268489	NM_006885.3	1208	tCg/tTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341299	89341299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	17	98	0	ENST00000301030.4:c.7636G>A	p.Ala2546Thr	p.A2546T	ENST00000301030	NM_001256183.1	2546	Gcc/Acc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346223	89346223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	86	447	0	ENST00000301030.4:c.6727C>T	p.Pro2243Ser	p.P2243S	ENST00000301030	NM_001256183.1	2243	Ccc/Tcc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	104	350	1	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	33	363	1	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690456	33690456	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770564755		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	93	387	0	ENST00000308377.4:c.371G>A	p.Arg124His	p.R124H	ENST00000308377	NM_152270.3	124	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	436	501	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	83	352	0	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	129	353	2	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532556	63532556	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	104	500	0	ENST00000307078.5:c.2023del	p.Arg675ValfsTer14	p.R675Vfs*14	ENST00000307078	NM_004655.3	675	Cgt/gt																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108548	8108548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	199	332	0	ENST00000585124.1:c.847C>T	p.Arg283Cys	p.R283C	ENST00000585124	NM_004217.3	283	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573505	48573506	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	152	403	0	ENST00000342988.3:c.94_95del	p.Ser32Ter	p.S32*	ENST00000342988	NM_005359.5	30	gGA/g																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031532	11031532	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	122	541	0	ENST00000327064.4:c.1451del	p.Pro484HisfsTer37	p.P484Hfs*37	ENST00000327064	NM_199141.1	483	Ccc/cc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350809	15350809	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200117669		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	68	297	0	ENST00000263377.2:c.3194C>T	p.Pro1065Leu	p.P1065L	ENST00000263377	NM_058243.2	1065	cCg/cTg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622415	1622415	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	73	240	0	ENST00000344749.5:c.550-1G>T		p.X184_splice	ENST00000344749	NM_001136139.2	184																																																																																
AXL	558	MSKCC	GRCh37	19	41736913	41736913	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779718472		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	146	431	0	ENST00000301178.4:c.628G>A	p.Ala210Thr	p.A210T	ENST00000301178	NM_021913.4	210	Gcc/Acc																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	126	460	1	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
CIC	23152	MSKCC	GRCh37	19	42793444	42793444	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	91	441	0	ENST00000575354.2:c.1250del	p.Pro417ArgfsTer18	p.P417Rfs*18	ENST00000575354	NM_015125.3	416	Ccc/cc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716335	52716335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	114	346	0	ENST00000322088.6:c.779G>A	p.Arg260His	p.R260H	ENST00000322088	NM_014225.5	260	cGc/cAc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190656563	190656563	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1367090018		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	109	280	0	ENST00000441310.2:c.28C>T	p.Arg10Ter	p.R10*	ENST00000441310	NM_000534.4	10	Cga/Tga																																																																															
CASP8	841	MSKCC	GRCh37	2	202149819	202149819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	100	405	0	ENST00000358485.4:c.1264del	p.Asp422IlefsTer19	p.D422Ifs*19	ENST00000358485	NM_001080125.1	420	caG/ca																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470579	25470580	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1157280960		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	108	402	0	ENST00000264709.3:c.894dup	p.Lys299GlufsTer25	p.K299Efs*25	ENST00000264709	NM_175629.2	298	-/G																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31389222	31389222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	121	360	0	ENST00000328111.2:c.2135G>A	p.Arg712Gln	p.R712Q	ENST00000328111	NM_006892.3	712	cGg/cAg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62305428	62305428	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs201365106		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	87	350	0	ENST00000482936.1:c.901G>A	p.Ala301Thr	p.A301T	ENST00000482936		301	Gcg/Acg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655272	45655272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764295138		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	113	344	0	ENST00000407780.3:c.580C>T	p.Arg194Trp	p.R194W	ENST00000407780	NM_001283052.1	194	Cgg/Tgg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413710	138413710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	69	295	4	ENST00000289153.2:c.1810del	p.Arg604GlyfsTer4	p.R604Gfs*4	ENST00000289153	NM_006219.2	604	Cgg/gg																																																																															
ATR	545	MSKCC	GRCh37	3	142286936	142286936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	128	199	0	ENST00000350721.4:c.120C>A	p.Phe40Leu	p.F40L	ENST00000350721	NM_001184.3	40	ttC/ttA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	96	306	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468382	89468382	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	71	249	0	ENST00000336596.2:c.1916G>T	p.Arg639Leu	p.R639L	ENST00000336596	NM_005233.5	639	cGc/cTc																																																																															
GAB1	2549	MSKCC	GRCh37	4	144361320	144361320	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369383480		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	106	385	0	ENST00000262994.4:c.1370G>A	p.Arg457Gln	p.R457Q	ENST00000262994	NM_002039.3	457	cGa/cAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244155	153244156	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			725	79	388	0	ENST00000281708.4:c.2001dup	p.Ser668GlufsTer26	p.S668Efs*26	ENST00000281708	NM_033632.3	667	-/G																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957034	1957034	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146318719		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	120	379	0	ENST00000382895.3:c.2485G>A	p.Val829Ile	p.V829I	ENST00000382895	NM_133330.2	829	Gtc/Atc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721164	176721165	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	113	404	0	ENST00000439151.2:c.6801dup	p.Ala2268SerfsTer13	p.A2268Sfs*13	ENST00000439151	NM_022455.4	2265	-/A																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	88	342	2	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589576	67589576	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1289537429		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	33	206	0	ENST00000274335.5:c.1344del	p.Lys448AsnfsTer32	p.K448Nfs*32	ENST00000274335		447	Aaa/aa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	94	251	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609894	117609894	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs202153378		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	119	289	0	ENST00000368508.3:c.6805C>T	p.Arg2269Ter	p.R2269*	ENST00000368508	NM_002944.2	2269	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	142	299	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	250	282	14	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012386	152012386	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	87	309	0	ENST00000262189.6:c.427del	p.Ser143ValfsTer3	p.S143Vfs*3	ENST00000262189	NM_170606.2	143	Agt/gt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	20	301	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6036958	6036958	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	92	227	0	ENST00000265849.7:c.802del	p.Tyr268ThrfsTer39	p.Y268Tfs*39	ENST00000265849	NM_000535.5	268	Tac/ac																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38277159	38277159	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	83	358	0	ENST00000425967.3:c.1269del	p.Ser424ArgfsTer7	p.S424Rfs*7	ENST00000425967	NM_001174067.1	423	ggG/gg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400291	139400291	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761908188		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	52	358	0	ENST00000277541.6:c.4057G>A	p.Gly1353Ser	p.G1353S	ENST00000277541	NM_017617.3	1353	Ggc/Agc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	55	254	0	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
TEK	7010	MSKCC	GRCh37	9	27212815	27212815	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1307510192		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	97	374	2	ENST00000380036.4:c.2797G>A	p.Ala933Thr	p.A933T	ENST00000380036	NM_000459.3	933	Gcg/Acg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8525018	8525018	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1329822805		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	82	251	0	ENST00000356435.5:c.586C>T	p.Gln196Ter	p.Q196*	ENST00000356435		196	Cag/Tag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209504	98209504	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766315655		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	153	382	0	ENST00000331920.6:c.4034G>A	p.Arg1345His	p.R1345H	ENST00000331920	NM_000264.3	1345	cGt/cAt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	79	361	0	ENST00000331920.6:c.3921del	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412059	63412059	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	102	473	0	ENST00000330258.3:c.1108del	p.Glu370ArgfsTer21	p.E370Rfs*21	ENST00000330258	NM_152424.3	370	Gag/ag																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150933580	150933581	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	54	311	0	ENST00000271640.5:c.3047dup	p.Ser1017LysfsTer6	p.S1017Kfs*6	ENST00000271640	NM_001145415.1	1014	-/G																																																																															
CDC73	79577	MSKCC	GRCh37	1	193099313	193099313	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	72	186	0	ENST00000367435.3:c.247A>C	p.Ile83Leu	p.I83L	ENST00000367435	NM_024529.4	83	Att/Ctt																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2489815	2489815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	84	393	0	ENST00000355716.4:c.212C>A	p.Thr71Lys	p.T71K	ENST00000355716	NM_003820.2	71	aCg/aAg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332226	70332226	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	238	337	0	ENST00000373644.4:c.131T>A	p.Leu44Ter	p.L44*	ENST00000373644	NM_030625.2	44	tTa/tAa																																																																															
CTR9	9646	MSKCC	GRCh37	11	10789929	10789929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	97	265	0	ENST00000361367.2:c.2000G>T	p.Arg667Leu	p.R667L	ENST00000361367	NM_014633.3	667	cGt/cTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49422972	49422972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	154	424	0	ENST00000301067.7:c.14123C>T	p.Ala4708Val	p.A4708V	ENST00000301067	NM_003482.3	4708	gCt/gTt																																																																															
KLF5	688	MSKCC	GRCh37	13	73633650	73633650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	37	177	0	ENST00000377687.4:c.185C>T	p.Pro62Leu	p.P62L	ENST00000377687	NM_001730.3	62	cCc/cTc																																																																															
RAD51	5888	MSKCC	GRCh37	15	40993343	40993345	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	73	271	0	ENST00000267868.3:c.172_174del	p.Lys58del	p.K58del	ENST00000267868	NM_002875.4	57	AAG/-																																																																															
NF1	4763	MSKCC	GRCh37	17	29592278	29592278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	50	232	0	ENST00000358273.4:c.4756G>A	p.Ala1586Thr	p.A1586T	ENST00000358273	NM_001042492.2	1586	Gct/Act																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374915	45374915	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs112162788		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	245	314	0	ENST00000262160.6:c.928A>G	p.Arg310Gly	p.R310G	ENST00000262160	NM_005901.5	310	Agg/Ggg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379878	17379878	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	93	289	0	ENST00000359435.4:c.263G>T	p.Arg88Met	p.R88M	ENST00000359435	NM_001033549.1	88	aGg/aTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42791249	42791249	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	119	398	0	ENST00000575354.2:c.309del	p.Glu104ArgfsTer101	p.E104Rfs*101	ENST00000575354	NM_015125.3	103	ccT/cc																																																																															
CIC	23152	MSKCC	GRCh37	19	42796972	42796972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	104	496	0	ENST00000575354.2:c.3430G>A	p.Ala1144Thr	p.A1144T	ENST00000575354	NM_015125.3	1144	Gcc/Acc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662532	227662532	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	108	448	1	ENST00000305123.5:c.923T>C	p.Ile308Thr	p.I308T	ENST00000305123	NM_005544.2	308	aTc/aCc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470532	25470532	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	70	381	0	ENST00000264709.3:c.942G>T	p.Trp314Cys	p.W314C	ENST00000264709	NM_175629.2	314	tgG/tgT																																																																															
ALK	238	MSKCC	GRCh37	2	29456441	29456441	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	122	377	0	ENST00000389048.3:c.2477A>G	p.Tyr826Cys	p.Y826C	ENST00000389048	NM_004304.4	826	tAc/tGc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62305429	62305429	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs373849709		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	112	351	0	ENST00000482936.1:c.902C>T	p.Ala301Val	p.A301V	ENST00000482936		301	gCg/gTg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21350272	21350272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370638947		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	83	360	0	ENST00000215739.8:c.2090G>A	p.Arg697Gln	p.R697Q	ENST00000215739	NM_006767.3	697	cGg/cAg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458330	12458330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	142	379	0	ENST00000287820.6:c.947G>A	p.Arg316His	p.R316H	ENST00000287820	NM_015869.4	316	cGc/cAc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430306	181430306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	51	198	0	ENST00000325404.1:c.158G>A	p.Arg53His	p.R53H	ENST00000325404	NM_003106.3	53	cGc/cAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540643	187540643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	108	382	0	ENST00000441802.2:c.7097G>A	p.Gly2366Asp	p.G2366D	ENST00000441802	NM_005245.3	2366	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112170827	112170827	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	106	272	0	ENST00000257430.4:c.1923T>G	p.Asn641Lys	p.N641K	ENST00000257430	NM_000038.5	641	aaT/aaG																																																																															
TERT	7015	MSKCC	GRCh37	5	1295044	1295044	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	68	382	0	ENST00000310581.5:c.61del	p.Val21CysfsTer57	p.V21Cfs*57	ENST00000310581	NM_198253.2	21	Gtg/tg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160684	56160684	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	117	352	0	ENST00000399503.3:c.958C>T	p.Gln320Ter	p.Q320*	ENST00000399503	NM_005921.1	320	Cag/Tag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527803	157527803	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758748419		P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	114	338	0	ENST00000346085.5:c.5528G>A	p.Arg1843His	p.R1843H	ENST00000346085	NM_020732.3	1843	cGc/cAc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117869514	117869514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	83	292	0	ENST00000297338.2:c.680G>A	p.Gly227Glu	p.G227E	ENST00000297338	NM_006265.2	227	gGa/gAa																																																																															
MTAP	4507	MSKCC	GRCh37	9	21854657	21854657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	91	306	2	ENST00000380172.4:c.478G>T	p.Gly160Ter	p.G160*	ENST00000380172	NM_002451.3	160	Gga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500855	8500855	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	115	338	0	ENST00000356435.5:c.2027A>G	p.Gln676Arg	p.Q676R	ENST00000356435		676	cAg/cGg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63409797	63409797	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	66	373	0	ENST00000330258.3:c.3370T>C	p.Tyr1124His	p.Y1124H	ENST00000330258	NM_152424.3	1124	Tac/Cac																																																																															
AR	367	MSKCC	GRCh37	X	66766522	66766522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	137	313	0	ENST00000374690.3:c.1534G>A	p.Val512Met	p.V512M	ENST00000374690	NM_000044.3	512	Gtg/Atg																																																																															
ATRX	546	MSKCC	GRCh37	X	76909623	76909623	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	45	242	0	ENST00000373344.5:c.4282A>G	p.Ile1428Val	p.I1428V	ENST00000373344	NM_000489.3	1428	Att/Gtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0082435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	299	434	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0082435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	106	329	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs879255270		P-0082435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	103	385	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62321178	62321178	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T			P-0082435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			714	617	376	0	ENST00000482936.1:c.2101C>T	p.His701Tyr	p.H701Y	ENST00000482936		701	Cac/Tac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0082442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	956	451	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0082442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	181	635	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30325942	30325942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	55	512	0	ENST00000322652.5:c.2140G>A	p.Glu714Lys	p.E714K	ENST00000322652	NM_015355.2	714	Gaa/Aaa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371995	55371995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	64	551	0	ENST00000297316.4:c.685G>A	p.Gly229Ser	p.G229S	ENST00000297316	NM_022454.3	229	Ggc/Agc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097742	27097742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	70	511	0	ENST00000324856.7:c.3331G>A	p.Glu1111Lys	p.E1111K	ENST00000324856	NM_006015.4	1111	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100093	27100093	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0082442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			791	86	667	0	ENST00000324856.7:c.3889G>T	p.Glu1297Ter	p.E1297*	ENST00000324856	NM_006015.4	1297	Gag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510214	187510214	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0082442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	108	497	0	ENST00000441802.2:c.13299T>G	p.Ser4433Arg	p.S4433R	ENST00000441802	NM_005245.3	4433	agT/agG																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30309951	30309951	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	52	477	0	ENST00000307677.4:c.71G>T	p.Trp24Leu	p.W24L	ENST00000307677	NM_138578.1	24	tGg/tTg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004802	150004802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			753	58	579	0	ENST00000253339.5:c.1423C>G	p.His475Asp	p.H475D	ENST00000253339		475	Cac/Gac																																																																															
USP8	9101	MSKCC	GRCh37	15	50788246	50788246	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	46	387	0	ENST00000307179.4:c.2860C>G	p.Leu954Val	p.L954V	ENST00000307179		954	Cta/Gta																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627460	37627460	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	53	491	0	ENST00000447079.4:c.1375G>C	p.Asp459His	p.D459H	ENST00000447079	NM_015083.1	459	Gat/Cat																																																																															
NSD1	64324	MSKCC	GRCh37	5	176694634	176694634	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	103	440	0	ENST00000439151.2:c.5218G>C	p.Glu1740Gln	p.E1740Q	ENST00000439151	NM_022455.4	1740	Gaa/Caa																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30325676	30325676	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0082442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	45	294	0	ENST00000322652.5:c.1875-1G>C		p.X625_splice	ENST00000322652	NM_015355.2	625																																																																																
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0082444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	362	529	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220703	1220703	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	186	415	0	ENST00000326873.7:c.721G>C	p.Ala241Pro	p.A241P	ENST00000326873	NM_000455.4	241	Gct/Cct																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246038	41246038	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80357445		P-0082444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	38	415	0	ENST00000357654.3:c.1510C>T	p.Arg504Cys	p.R504C	ENST00000357654	NM_007294.3	504	Cgt/Tgt																																																																															
MSI1	4440	MSKCC	GRCh37	12	120794800	120794800	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	226	450	0	ENST00000257552.2:c.557C>A	p.Pro186Gln	p.P186Q	ENST00000257552	NM_002442.3	186	cCa/cAa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353740	15353740	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	200	368	0	ENST00000263377.2:c.3140G>T	p.Arg1047Leu	p.R1047L	ENST00000263377	NM_058243.2	1047	cGg/cTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209713	98209713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	232	450	0	ENST00000331920.6:c.3825G>T	p.Arg1275Ser	p.R1275S	ENST00000331920	NM_000264.3	1275	agG/agT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163724	32163725	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0082444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	257	351	0	ENST00000375023.3:c.5501dup	p.Arg1835ProfsTer81	p.R1835Pfs*81	ENST00000375023	NM_004557.3	1834	ggc/ggGc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21629928	21629928	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-			P-0082444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	103	244	0	ENST00000421138.2:c.868-2del		p.X290_splice	ENST00000421138		290																																																																																
AKT3	10000	MSKCC	GRCh37	1	243736342	243736342	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			947	52	389	0	ENST00000263826.5:c.705C>G	p.Phe235Leu	p.F235L	ENST00000263826	NM_005465.4	235	ttC/ttG																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859785	151859785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	380	503	0	ENST00000262189.6:c.10877A>G	p.His3626Arg	p.H3626R	ENST00000262189	NM_170606.2	3626	cAt/cGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992791	72992793	+	missense_variant	Missense_Mutation	ONP	GAC	GAC	AAT			P-0082444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	95	409	0	ENST00000268489.5:c.1252_1254delinsATT	p.Val418Ile	p.V418I	ENST00000268489	NM_006885.3	418	GTC/ATT																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0082445-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	31	299	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0082445-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	170	420	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0082445-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	66	209	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647098	23647098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082445-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	87	397	0	ENST00000261584.4:c.769G>T	p.Gly257Cys	p.G257C	ENST00000261584	NM_024675.3	257	Ggt/Tgt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742846	17742846	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082445-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	25	286	0	ENST00000250003.3:c.754C>G	p.Leu252Val	p.L252V	ENST00000250003	NM_002478.4	252	Ctg/Gtg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71019919	71019919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082445-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	45	253	0	ENST00000318789.4:c.1690G>T	p.Ala564Ser	p.A564S	ENST00000318789	NM_032682.5	564	Gcc/Tcc																																																																															
MED12	9968	MSKCC	GRCh37	X	70345323	70345323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082445-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	57	303	0	ENST00000374080.3:c.2349C>A	p.Asn783Lys	p.N783K	ENST00000374080		783	aaC/aaA																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499514	89499514	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs141716319		P-0082445-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	29	278	0	ENST00000336596.2:c.2684C>G	p.Ala895Gly	p.A895G	ENST00000336596	NM_005233.5	895	gCc/gGc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281897	49281897	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082445-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	135	283	0	ENST00000282018.3:c.944G>T	p.Arg315Ile	p.R315I	ENST00000282018	NM_020377.2	315	aGa/aTa																																																																															
RB1	5925	MSKCC	GRCh37	13	49033865	49033865	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082445-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	111	295	0	ENST00000267163.4:c.2002del	p.Arg668AlafsTer9	p.R668Afs*9	ENST00000267163	NM_000321.2	668	Cgc/gc																																																																															
ATR	545	MSKCC	GRCh37	3	142215957	142215957	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0082445-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	39	238	0	ENST00000350721.4:c.5636A>T	p.Asp1879Val	p.D1879V	ENST00000350721	NM_001184.3	1879	gAt/gTt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627692	37627692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082445-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	102	339	0	ENST00000447079.4:c.1607C>T	p.Pro536Leu	p.P536L	ENST00000447079	NM_015083.1	536	cCa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0082453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	185	313	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291561	15291561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	160	426	0	ENST00000263388.2:c.3073C>T	p.Pro1025Ser	p.P1025S	ENST00000263388	NM_000435.2	1025	Ccc/Tcc																																																																															
KDR	3791	MSKCC	GRCh37	4	55973907	55973907	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	48	293	0	ENST00000263923.4:c.1409C>A	p.Pro470His	p.P470H	ENST00000263923	NM_002253.2	470	cCc/cAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599904	10599904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	147	362	0	ENST00000171111.5:c.1672G>T	p.Gly558Trp	p.G558W	ENST00000171111	NM_203500.1	558	Ggg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0082453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	85	207	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248656	212248656	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0082453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	67	400	0	ENST00000342788.4:c.3611A>T	p.Asn1204Ile	p.N1204I	ENST00000342788	NM_005235.2	1204	aAt/aTt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902215	50902215	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0082453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	223	404	0	ENST00000440232.2:c.107A>T	p.Glu36Val	p.E36V	ENST00000440232	NM_002691.3	36	gAg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945099	151945099	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	19	243	0	ENST00000262189.6:c.2420C>A	p.Ser807Tyr	p.S807Y	ENST00000262189	NM_170606.2	807	tCt/tAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900280	32900280	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0082453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	30	224	0	ENST00000380152.3:c.468T>G	p.Asp156Glu	p.D156E	ENST00000380152		156	gaT/gaG																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44950041	44950041	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	59	136	0	ENST00000377967.4:c.3810G>C	p.Met1270Ile	p.M1270I	ENST00000377967	NM_021140.2	1270	atG/atC																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660543	227660543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			778	96	472	0	ENST00000305123.5:c.2912G>T	p.Gly971Val	p.G971V	ENST00000305123	NM_005544.2	971	gGg/gTg																																																																															
RAD51	5888	MSKCC	GRCh37	15	41011016	41011016	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	117	307	0	ENST00000267868.3:c.449G>T	p.Arg150Leu	p.R150L	ENST00000267868	NM_002875.4	150	cGg/cTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120483348	120483348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	84	349	0	ENST00000256646.2:c.3013G>T	p.Gly1005Trp	p.G1005W	ENST00000256646	NM_024408.3	1005	Ggg/Tgg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40462530	40462530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			739	55	349	0	ENST00000345506.4:c.2228A>G	p.Asp743Gly	p.D743G	ENST00000345506	NM_003152.3	743	gAc/gGc																																																																															
PGR	5241	MSKCC	GRCh37	11	100999750	100999750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	49	367	0	ENST00000325455.5:c.52C>A	p.Pro18Thr	p.P18T	ENST00000325455	NM_001202474.3	18	Ccg/Acg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425412	49425412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			814	72	497	0	ENST00000301067.7:c.13076C>T	p.Ser4359Leu	p.S4359L	ENST00000301067	NM_003482.3	4359	tCa/tTa																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430950	181430950	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	203	457	0	ENST00000325404.1:c.805del	p.Asp269ThrfsTer5	p.D269Tfs*5	ENST00000325404	NM_003106.3	268	Ggg/gg																																																																															
TEK	7010	MSKCC	GRCh37	9	27197325	27197325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	102	262	0	ENST00000380036.4:c.1637C>A	p.Pro546Gln	p.P546Q	ENST00000380036	NM_000459.3	546	cCa/cAa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793382	18793382	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs77070108		P-0082457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	71	249	0	ENST00000266497.5:c.4079C>T	p.Ala1360Val	p.A1360V	ENST00000266497		1360	gCg/gTg																																																																															
ALK	238	MSKCC	GRCh37	2	30143179	30143179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	48	375	0	ENST00000389048.3:c.347C>T	p.Ala116Val	p.A116V	ENST00000389048	NM_004304.4	116	gCc/gTc																																																																															
MGA	23269	MSKCC	GRCh37	15	42028533	42028534	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CACATCAATAGCAACATGC			P-0082457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	46	408	0	ENST00000219905.7:c.4076_4094dup	p.Gln1365HisfsTer3	p.Q1365Hfs*3	ENST00000219905	NM_001164273.1	1357	-/CACATCAATAGCAACATGC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0082466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	74	169	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29195852	29195852	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0082466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	89	293	0	ENST00000240100.2:c.746A>T	p.Asp249Val	p.D249V	ENST00000240100	NM_001394.6	249	gAt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0082467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	69	279	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0082467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	116	211	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55220281	55220281	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759106015		P-0082467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	27	215	0	ENST00000275493.2:c.671G>A	p.Arg224His	p.R224H	ENST00000275493	NM_005228.3	224	cGt/cAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68972941	68972941	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs761058511		P-0082467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	82	224	0	ENST00000288368.4:c.1266T>G	p.Ile422Met	p.I422M	ENST00000288368	NM_024870.2	422	atT/atG																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701889	43701889	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0082467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	64	238	0	ENST00000382044.4:c.5356C>T	p.Arg1786Ter	p.R1786*	ENST00000382044	NM_001141980.1	1786	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0082467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	66	207	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0082467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	24	207	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114905777	114905777	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	34	210	0	ENST00000543371.1:c.796del	p.Gln266AsnfsTer19	p.Q266Nfs*19	ENST00000543371	NM_001198531.1	266	Caa/aa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117683	70117684	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0082467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	108	399	0	ENST00000245479.2:c.154_155dup	p.Phe53ArgfsTer9	p.F53Rfs*9	ENST00000245479	NM_000346.3	51	aac/aACac																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175218	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAGAA	AAAAGAA	-			P-0082467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	136	295	0	ENST00000257430.4:c.3923_3929del	p.Lys1308ArgfsTer11	p.K1308Rfs*11	ENST00000257430	NM_000038.5	1307	atAAAAGAA/at																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087437	27087437	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	55	291	0	ENST00000324856.7:c.2011G>T	p.Gly671Ter	p.G671*	ENST00000324856	NM_006015.4	671	Gga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	37	301	1	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	40	331	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	80	353	10	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200877	67200877	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	73	333	0	ENST00000312629.5:c.870del	p.Tyr291ThrfsTer14	p.Y291Tfs*14	ENST00000312629	NM_003952.2	289	Ccc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49418437	49418437	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	71	321	0	ENST00000301067.7:c.15976del	p.Met5327TrpfsTer6	p.M5327Wfs*6	ENST00000301067	NM_003482.3	5326	Ctt/tt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420203	49420204	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	76	306	0	ENST00000301067.7:c.15545dup	p.Leu5183ProfsTer16	p.L5183Pfs*16	ENST00000301067	NM_003482.3	5182	ggc/ggGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436952	49436952	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748653082		P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	48	273	0	ENST00000301067.7:c.5551G>A	p.Val1851Met	p.V1851M	ENST00000301067	NM_003482.3	1851	Gtg/Atg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563293	21563293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367963331		P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	26	402	0	ENST00000382592.4:c.626G>A	p.Arg209Gln	p.R209Q	ENST00000382592	NM_014572.2	209	cGg/cAg																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	76	301	1	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788618	3788618	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs398124146		P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	67	198	0	ENST00000262367.5:c.4336C>T	p.Arg1446Cys	p.R1446C	ENST00000262367	NM_004380.2	1446	Cgc/Tgc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89335038	89335038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	35	174	0	ENST00000301030.4:c.7840G>A	p.Ala2614Thr	p.A2614T	ENST00000301030	NM_001256183.1	2614	Gcg/Acg																																																																															
NF1	4763	MSKCC	GRCh37	17	29486050	29486050	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1438566555		P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	67	200	1	ENST00000358273.4:c.233del	p.Asn78IlefsTer7	p.N78Ifs*7	ENST00000358273	NM_001042492.2	76	gAa/ga																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30315461	30315462	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	92	249	0	ENST00000322652.5:c.1150_1151del	p.Leu385ProfsTer10	p.L385Pfs*10	ENST00000322652	NM_015355.2	382	tcAGag/tcag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	76	301	4	ENST00000447079.4:c.4382del	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40468879	40468879	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	61	257	0	ENST00000264657.5:c.2185del	p.Arg729AlafsTer3	p.R729Afs*3	ENST00000264657	NM_139276.2	729	Cgc/gc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	128	417	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	78	284	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17937626	17937626	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747388225		P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	63	264	0	ENST00000458235.1:c.3301G>A	p.Gly1101Arg	p.G1101R	ENST00000458235	NM_000215.3	1101	Gga/Aga																																																																															
AXL	558	MSKCC	GRCh37	19	41727944	41727944	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1009680105		P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	24	275	0	ENST00000301178.4:c.569G>A	p.Arg190His	p.R190H	ENST00000301178	NM_021913.4	190	cGc/cAc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	64	297	1	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793263	242793263	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754424677		P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	57	318	0	ENST00000334409.5:c.814C>T	p.Arg272Trp	p.R272W	ENST00000334409	NM_005018.2	272	Cgg/Tgg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	55	281	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103755	47103756	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	104	274	0	ENST00000409792.3:c.6190_6191del	p.Asp2064ProfsTer8	p.D2064Pfs*8	ENST00000409792	NM_014159.6	2064	GAc/c																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259454	89259454	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	51	287	0	ENST00000336596.2:c.602del	p.Lys201SerfsTer6	p.K201Sfs*6	ENST00000336596	NM_005233.5	200	Aaa/aa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	63	240	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753325	57753325	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1251040408		P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	28	266	0	ENST00000274289.3:c.799G>T	p.Gly267Cys	p.G267C	ENST00000274289	NM_006622.3	267	Ggc/Tgc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	102	262	1	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	81	277	0	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	22	218	0	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139802655	139802655	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs549406018		P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	67	191	0	ENST00000247668.2:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000247668	NM_021138.3	167	cGg/cAg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2058453	2058453	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs576817778		P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	49	202	0	ENST00000349721.2:c.1510C>T	p.Arg504Trp	p.R504W	ENST00000349721	NM_003070.3	504	Cgg/Tgg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8633320	8633320	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866980874		P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	55	231	1	ENST00000356435.5:c.349C>T	p.Arg117Trp	p.R117W	ENST00000356435		117	Cgg/Tgg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	83	372	1	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165693	118165693	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	83	368	0	ENST00000369448.3:c.203A>T	p.Asp68Val	p.D68V	ENST00000369448	NM_017709.3	68	gAc/gTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257504	16257504	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	74	308	0	ENST00000375759.3:c.4769T>G	p.Leu1590Arg	p.L1590R	ENST00000375759	NM_015001.2	1590	cTc/cGc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716247	243716247	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	62	168	0	ENST00000263826.5:c.949-2A>G		p.X317_splice	ENST00000263826	NM_005465.4	317																																																																																
SESN2	83667	MSKCC	GRCh37	1	28600628	28600628	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	73	233	0	ENST00000253063.3:c.979A>G	p.Thr327Ala	p.T327A	ENST00000253063	NM_031459.4	327	Act/Gct																																																																															
TET1	80312	MSKCC	GRCh37	10	70450967	70450967	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	66	322	0	ENST00000373644.4:c.5807C>A	p.Pro1936His	p.P1936H	ENST00000373644	NM_030625.2	1936	cCt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420609	49420609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	93	364	0	ENST00000301067.7:c.15140C>T	p.Ala5047Val	p.A5047V	ENST00000301067	NM_003482.3	5047	gCc/gTc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134647	41134647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	67	301	0	ENST00000379561.5:c.981A>T	p.Arg327Ser	p.R327S	ENST00000379561	NM_002015.3	327	agA/agT																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59878817	59878817	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	55	227	0	ENST00000259008.2:c.937del	p.Tyr313IlefsTer25	p.Y313Ifs*25	ENST00000259008	NM_032043.2	313	Tat/at																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128050229	128050229	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	71	247	0	ENST00000285398.2:c.428T>C	p.Leu143Pro	p.L143P	ENST00000285398	NM_000122.1	143	cTc/cCc																																																																															
ALK	238	MSKCC	GRCh37	2	29455299	29455299	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	48	288	0	ENST00000389048.3:c.2503C>A	p.Pro835Thr	p.P835T	ENST00000389048	NM_004304.4	835	Ccg/Acg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204718	128204719	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCAGGCT			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	82	344	0	ENST00000341105.2:c.716_722dup	p.Thr242AlafsTer42	p.T242Afs*42	ENST00000341105	NM_032638.4	241	gct/gcAGCCTGCt																																																																															
KDR	3791	MSKCC	GRCh37	4	55981109	55981109	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	79	222	0	ENST00000263923.4:c.590T>C	p.Met197Thr	p.M197T	ENST00000263923	NM_002253.2	197	aTg/aCg																																																																															
IRF4	3662	MSKCC	GRCh37	6	405060	405060	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	132	259	0	ENST00000380956.4:c.1142T>C	p.Phe381Ser	p.F381S	ENST00000380956	NM_001195286.1	381	tTc/tCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0082470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	140	290	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	136	365	0	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0082470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	88	226	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2127659	2127659	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	153	404	0	ENST00000219476.3:c.2898C>A	p.Phe966Leu	p.F966L	ENST00000219476	NM_000548.3	966	ttC/ttA																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266061	41266656	+	splice_donor_variant,splice_acceptor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	GCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGT	GCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGT	-			P-0082470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	134	332	0	ENST00000349496.5:c.60_455del		p.X20_splice	ENST00000349496	NM_001904.3	20	GCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGT/-																																																																															
LATS1	9113	MSKCC	GRCh37	6	150022964	150022964	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0082470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	100	238	0	ENST00000253339.5:c.299A>T	p.Glu100Val	p.E100V	ENST00000253339		100	gAa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0082471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	101	349	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0082471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	131	338	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
SESN3	143686	MSKCC	GRCh37	11	94911936	94911936	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1202546852		P-0082471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	46	264	0	ENST00000536441.1:c.994G>A	p.Gly332Ser	p.G332S	ENST00000536441	NM_144665.3	332	Ggt/Agt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0082471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	60	190	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763437	59763437	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	108	282	0	ENST00000259008.2:c.2665C>G	p.Gln889Glu	p.Q889E	ENST00000259008	NM_032043.2	889	Caa/Gaa																																																																															
NF1	4763	MSKCC	GRCh37	17	29686023	29686023	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778799019		P-0082471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	78	174	0	ENST00000358273.4:c.8150C>T	p.Pro2717Leu	p.P2717L	ENST00000358273	NM_001042492.2	2717	cCg/cTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120333	70120334	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGAACTCCAGCTCCTACTA			P-0082471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	154	340	0	ENST00000245479.2:c.1339_1358dup	p.Ser453ArgfsTer24	p.S453Rfs*24	ENST00000245479	NM_000346.3	445	-/CAGAACTCCAGCTCCTACTA																																																																															
APC	324	MSKCC	GRCh37	5	112174482	112174486	+	frameshift_variant	Frame_Shift_Del	DEL	AGCAA	AGCAA	-			P-0082471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	112	317	0	ENST00000257430.4:c.3193_3197del	p.Gln1065ThrfsTer14	p.Q1065Tfs*14	ENST00000257430	NM_000038.5	1064	gAGCAA/g																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			839	164	457	1	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0082502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	182	440	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0082502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	209	259	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112891046	112891046	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	213	356	0	ENST00000351677.2:c.380C>G	p.Thr127Ser	p.T127S	ENST00000351677	NM_002834.3	127	aCt/aGt																																																																															
ATM	472	MSKCC	GRCh37	11	108165676	108165677	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0082502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	163	349	0	ENST00000278616.4:c.4801dup	p.Ser1601LysfsTer4	p.S1601Kfs*4	ENST00000278616	NM_000051.3	1600	gta/gtAa																																																																															
MET	4233	MSKCC	GRCh37	7	116339512	116339512	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			822	84	448	0	ENST00000397752.3:c.374A>G	p.Tyr125Cys	p.Y125C	ENST00000397752	NM_000245.2	125	tAc/tGc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920423	114920423	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			688	121	369	0	ENST00000543371.1:c.1364G>C	p.Arg455Pro	p.R455P	ENST00000543371	NM_001198531.1	455	cGa/cCa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324492	31324492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			801	165	476	0	ENST00000412585.2:c.316C>T	p.Arg106Cys	p.R106C	ENST00000412585	NM_005514.6	106	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577512	7577513	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0082503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	133	293	0	ENST00000269305.4:c.768_769del	p.Leu257GlyfsTer6	p.L257Gfs*6	ENST00000269305	NM_001126112.2	256	acACtg/actg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499420	89499420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			744	139	400	1	ENST00000336596.2:c.2590G>A	p.Asp864Asn	p.D864N	ENST00000336596	NM_005233.5	864	Gac/Aac																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487322	56487322	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775042280		P-0082503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	90	319	0	ENST00000267101.3:c.1468C>T	p.Arg490Cys	p.R490C	ENST00000267101	NM_001982.3	490	Cgc/Tgc																																																																															
SMO	6608	MSKCC	GRCh37	7	128848638	128848638	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1029412439		P-0082503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	189	308	0	ENST00000249373.3:c.1303G>A	p.Gly435Arg	p.G435R	ENST00000249373	NM_005631.4	435	Ggg/Agg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411759	63411759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	173	218	1	ENST00000330258.3:c.1408G>A	p.Gly470Ser	p.G470S	ENST00000330258	NM_152424.3	470	Ggt/Agt																																																																															
ATM	472	MSKCC	GRCh37	11	108202763	108202763	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0082503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	103	295	0	ENST00000278616.4:c.7787A>T	p.Glu2596Val	p.E2596V	ENST00000278616	NM_000051.3	2596	gAg/gTg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35857089	35857089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	119	293	0	ENST00000303115.3:c.10C>A	p.Leu4Ile	p.L4I	ENST00000303115	NM_002185.3	4	Cta/Ata																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0082504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	480	337	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0082504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	226	280	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0082504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	167	324	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120016	70120016	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1339655148		P-0082504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	431	301	0	ENST00000245479.2:c.1018C>T	p.Gln340Ter	p.Q340*	ENST00000245479	NM_000346.3	340	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023861	27023861	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1336228861		P-0082504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	347	384	0	ENST00000324856.7:c.971del	p.Gly324AlafsTer39	p.G324Afs*39	ENST00000324856	NM_006015.4	323	Ggg/gg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40710566	40710566	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760820896		P-0082504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			791	279	365	0	ENST00000373198.4:c.4285G>A	p.Val1429Met	p.V1429M	ENST00000373198	NM_133170.3	1429	Gtg/Atg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778000	3778000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			860	195	541	0	ENST00000262367.5:c.7048C>A	p.Gln2350Lys	p.Q2350K	ENST00000262367	NM_004380.2	2350	Cag/Aag																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73112859	73112859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	141	238	0	ENST00000356692.5:c.455G>A	p.Gly152Asp	p.G152D	ENST00000356692		152	gGt/gAt																																																																															
MST1	4485	MSKCC	GRCh37	3	49723076	49723076	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	33	80	0	ENST00000449682.2:c.1340C>A	p.Thr447Lys	p.T447K	ENST00000449682	NM_020998.3	447	aCg/aAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0082506-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	261	394	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578445	7578445	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0082506-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	327	479	0	ENST00000269305.4:c.485T>A	p.Ile162Asn	p.I162N	ENST00000269305	NM_001126112.2	162	aTc/aAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445140	49445140	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082506-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			789	143	501	0	ENST00000301067.7:c.2326G>C	p.Glu776Gln	p.E776Q	ENST00000301067	NM_003482.3	776	Gag/Cag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106392	27106392	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082506-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	288	405	0	ENST00000324856.7:c.6003del	p.Met2001IlefsTer14	p.M2001Ifs*14	ENST00000324856	NM_006015.4	2001	atG/at																																																																															
APC	324	MSKCC	GRCh37	5	112175269	112175270	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCACAGCACCCTAGAACCAAATCCAGCAGACTGCAGGGTTCTAGTT			P-0082506-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			815	143	377	0	ENST00000257430.4:c.3980_4025dup	p.Leu1342PhefsTer5	p.L1342Ffs*5	ENST00000257430	NM_000038.5	1326	-/TCACAGCACCCTAGAACCAAATCCAGCAGACTGCAGGGTTCTAGTT																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119020	70119021	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0082506-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			836	145	506	0	ENST00000245479.2:c.595_596dup	p.Asn201ProfsTer19	p.N201Pfs*19	ENST00000245479	NM_000346.3	198	atc/aTCtc																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2636697	2636697	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082506-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	141	441	0	ENST00000342085.4:c.1146G>C	p.Gln382His	p.Q382H	ENST00000342085	NM_002613.4	382	caG/caC																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	378	488	0	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0082510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			89	174	261	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057520005		P-0082510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	289	398	0	ENST00000269305.4:c.820G>C	p.Val274Leu	p.V274L	ENST00000269305	NM_001126112.2	274	Gtt/Ctt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460572	8460572	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0082510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	210	279	0	ENST00000356435.5:c.3715-1G>C		p.X1239_splice	ENST00000356435		1239																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151864308	151864308	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0082510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			855	231	321	0	ENST00000262189.6:c.9673G>T	p.Glu3225Ter	p.E3225*	ENST00000262189	NM_170606.2	3225	Gaa/Taa																																																																															
POLE	5426	MSKCC	GRCh37	12	133252024	133252024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	188	399	0	ENST00000320574.5:c.1186G>A	p.Glu396Lys	p.E396K	ENST00000320574	NM_006231.2	396	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0082545-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			54	67	182	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
CDC42	998	MSKCC	GRCh37	1	22417982	22417983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0082545-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	36	99	0	ENST00000344548.3:c.549dup	p.Lys184GlufsTer30	p.K184Efs*30	ENST00000344548	NM_001039802.1	183	aag/aaGg																																																																															
IDH2	3418	MSKCC	GRCh37	15	90634870	90634870	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082545-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	92	422	0	ENST00000330062.3:c.122A>G	p.Asp41Gly	p.D41G	ENST00000330062	NM_002168.2	41	gAc/gGc																																																																															
HRAS	3265	MSKCC	GRCh37	11	534288	534288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894230		P-0082262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	88	322	0	ENST00000311189.7:c.35G>A	p.Gly12Asp	p.G12D	ENST00000311189		12	gGc/gAc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40500523	40500523	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0082262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	68	250	0	ENST00000264657.5:c.12G>A	p.Trp4Ter	p.W4*	ENST00000264657	NM_139276.2	4	tgG/tgA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0082262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	11	135	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0082262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	37	152	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0082262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	33	255	0				ENST00000310581	NM_198253.2																																																																																	
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0068646-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			438	149	453	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133772	41133772	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745385825		P-0068646-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	121	446	0	ENST00000379561.5:c.1856G>A	p.Arg619Gln	p.R619Q	ENST00000379561	NM_002015.3	619	cGg/cAg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061313	38061313	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1204900727		P-0068646-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			457	116	505	0	ENST00000250448.2:c.676G>A	p.Asp226Asn	p.D226N	ENST00000250448	NM_004496.3	226	Gac/Aac																																																																															
SDHC	6391	MSKCC	GRCh37	1	161293444	161293444	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068646-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			376	98	336	0	ENST00000367975.2:c.61C>T	p.Gln21Ter	p.Q21*	ENST00000367975	NM_003001.3	21	Cag/Tag																																																																															
JAK2	3717	MSKCC	GRCh37	9	5055739	5055739	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0068646-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			177	72	338	0	ENST00000381652.3:c.1007C>G	p.Ser336Ter	p.S336*	ENST00000381652	NM_004972.3	336	tCa/tGa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487211	56487211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776335440		P-0068646-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	108	409	0	ENST00000267101.3:c.1357C>T	p.Arg453Cys	p.R453C	ENST00000267101	NM_001982.3	453	Cgt/Tgt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881616	37881616	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758222990		P-0068646-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			6092	168	0	0	ENST00000269571.5:c.2686C>T	p.Arg896Cys	p.R896C	ENST00000269571		896	Cgc/Tgc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106543499	106543499	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068646-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			218	79	374	0	ENST00000369096.4:c.301G>T	p.Val101Leu	p.V101L	ENST00000369096	NM_001198.3	101	Gtg/Ttg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47127696	47127696	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068646-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			408	109	402	0	ENST00000409792.3:c.5386C>A	p.Leu1796Ile	p.L1796I	ENST00000409792	NM_014159.6	1796	Ctt/Att																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239609	53239609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068646-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			562	146	446	0	ENST00000375401.3:c.1733C>T	p.Ser578Phe	p.S578F	ENST00000375401	NM_004187.3	578	tCc/tTc																																																																															
TET1	80312	MSKCC	GRCh37	10	70426835	70426835	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068646-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			438	156	397	0	ENST00000373644.4:c.4495C>G	p.Leu1499Val	p.L1499V	ENST00000373644	NM_030625.2	1499	Ctt/Gtt																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67632142	67632142	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068646-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	50	385	1	ENST00000272342.5:c.2328G>C	p.Leu776Phe	p.L776F	ENST00000272342	NM_019002.3	776	ttG/ttC																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288321	33288321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068646-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			538	179	502	0	ENST00000374542.5:c.1087G>A	p.Glu363Lys	p.E363K	ENST00000374542	NM_001141970.1	363	Gaa/Aaa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56411611	56411611	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068646-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			162	50	346	0	ENST00000348428.3:c.1795C>T	p.Gln599Ter	p.Q599*	ENST00000348428	NM_006785.3	599	Cag/Tag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	21	511	0	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453145	140453145	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs121913366		P-0081230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	10	401	0	ENST00000288602.6:c.1790T>G	p.Leu597Arg	p.L597R	ENST00000288602	NM_004333.4	597	cTa/cGa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061185	38061202	+	inframe_deletion	In_Frame_Del	DEL	GCACTTGAAGCGCTTCTG	GCACTTGAAGCGCTTCTG	-			P-0081230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	14	491	0	ENST00000250448.2:c.787_804del	p.Gln263_Cys268del	p.Q263_C268del	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTCAAGTGC/-																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266107	41266107	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0081771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	9	392	0	ENST00000349496.5:c.104T>G	p.Ile35Ser	p.I35S	ENST00000349496	NM_001904.3	35	aTc/aGc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061434	38061436	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-			P-0081771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	154	368	0	ENST00000250448.2:c.553_555del	p.Gln185del	p.Q185del	ENST00000250448	NM_004496.3	185	CAG/-																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657578	37657578	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	151	345	0	ENST00000447079.4:c.2495del	p.Ser832LeufsTer9	p.S832Lfs*9	ENST00000447079	NM_015083.1	832	tCt/tt																																																																															
RB1	5925	MSKCC	GRCh37	13	48916804	48916804	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0082364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	70	200	0	ENST00000267163.4:c.334G>T	p.Glu112Ter	p.E112*	ENST00000267163	NM_000321.2	112	Gag/Tag																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459481	50459481	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	55	208	0	ENST00000331340.3:c.770G>C	p.Gly257Ala	p.G257A	ENST00000331340	NM_006060.4	257	gGa/gCa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032039	26032039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			821	55	217	0	ENST00000244661.2:c.250C>T	p.Arg84Cys	p.R84C	ENST00000244661	NM_003537.3	84	Cgc/Tgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653790	89653790	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	30	232	0	ENST00000371953.3:c.88C>G	p.Pro30Ala	p.P30A	ENST00000371953	NM_000314.4	30	Cca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7579362	7579365	+	frameshift_variant	Frame_Shift_Del	DEL	AACC	AACC	-			P-0082364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	129	203	0	ENST00000269305.4:c.322_325del	p.Gly108SerfsTer14	p.G108Sfs*14	ENST00000269305	NM_001126112.2	108	GGTTtc/tc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6035247	6035247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	38	290	0	ENST00000265849.7:c.821C>T	p.Ser274Leu	p.S274L	ENST00000265849	NM_000535.5	274	tCa/tTa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337626	73337626	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0082364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	46	223	0	ENST00000377767.4:c.2090C>G	p.Ser697Ter	p.S697*	ENST00000377767	NM_014953.3	697	tCa/tGa																																																																															
ATR	545	MSKCC	GRCh37	3	142280211	142280211	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	45	204	0	ENST00000350721.4:c.1223T>C	p.Ile408Thr	p.I408T	ENST00000350721	NM_001184.3	408	aTt/aCt																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308052	30308052	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	38	180	0	ENST00000262643.3:c.189C>G	p.Asp63Glu	p.D63E	ENST00000262643	NM_001238.2	63	gaC/gaG																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949033	151949033	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	93	213	0	ENST00000262189.6:c.1612C>G	p.Leu538Val	p.L538V	ENST00000262189	NM_170606.2	538	Ctc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0082369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	158	374	0	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																															
FYN	2534	MSKCC	GRCh37	6	111983114	111983114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	164	405	0	ENST00000368678.4:c.1433G>T	p.Arg478Leu	p.R478L	ENST00000368678		478	cGa/cTa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251801	212251801	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	168	375	0	ENST00000342788.4:c.3258C>A	p.Ser1086Arg	p.S1086R	ENST00000342788	NM_005235.2	1086	agC/agA																																																																															
STAT3	6774	MSKCC	GRCh37	17	40485745	40485745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	40	386	0	ENST00000264657.5:c.995A>G	p.His332Arg	p.H332R	ENST00000264657	NM_139276.2	332	cAt/cGt																																																																															
HGF	3082	MSKCC	GRCh37	7	81334762	81334762	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	115	303	0	ENST00000222390.5:c.1954C>A	p.Leu652Met	p.L652M	ENST00000222390	NM_000601.4	652	Ctg/Atg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424797	47424804	+	frameshift_variant	Frame_Shift_Del	DEL	TAATGCTG	TAATGCTG	-			P-0082369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	178	383	0	ENST00000404338.3:c.2865_2872del	p.Asn956ArgfsTer4	p.N956Rfs*4	ENST00000404338	NM_004491.4	955	gaTAATGCTGcc/gacc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562555	95562555	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	164	405	0	ENST00000343455.3:c.4702G>T	p.Gly1568Cys	p.G1568C	ENST00000343455	NM_177438.2	1568	Ggc/Tgc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120160	70120160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	289	351	0	ENST00000245479.2:c.1162G>A	p.Glu388Lys	p.E388K	ENST00000245479	NM_000346.3	388	Gag/Aag																																																																															
POLE	5426	MSKCC	GRCh37	12	133209319	133209333	+	inframe_deletion	In_Frame_Del	DEL	TGCTCCCTGGAGCAC	TGCTCCCTGGAGCAC	-			P-0082369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	31	440	0	ENST00000320574.5:c.6053_6067del	p.Ser2018_Ser2022del	p.S2018_S2022del	ENST00000320574	NM_006231.2	2018	aGTGCTCCAGGGAGCAcc/acc																																																																															
SDHD	6392	MSKCC	GRCh37	11	111957636	111957636	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	134	295	0	ENST00000375549.3:c.5C>A	p.Ala2Glu	p.A2E	ENST00000375549	NM_003002.3	2	gCg/gAg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169988222	169988222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	284	238	1	ENST00000295797.4:c.464C>T	p.Ala155Val	p.A155V	ENST00000295797	NM_002740.5	155	gCc/gTc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056177	26056188	+	inframe_deletion	In_Frame_Del	DEL	CTTCTTCGCTTT	CTTCTTCGCTTT	-			P-0082369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	120	428	0	ENST00000343677.2:c.469_480del	p.Lys157_Lys160del	p.K157_K160del	ENST00000343677	NM_005319.3	157	AAAGCGAAGAAG/-																																																																															
FYN	2534	MSKCC	GRCh37	6	112015634	112015634	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	143	401	0	ENST00000368678.4:c.1208T>C	p.Ile403Thr	p.I403T	ENST00000368678		403	aTt/aCt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508733	106508733	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1207051578		P-0082370-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	118	442	0	ENST00000359195.3:c.727G>A	p.Ala243Thr	p.A243T	ENST00000359195	NM_002649.2	243	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112175843	112175847	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGA	AAAGA	-			P-0082370-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	24	442	0	ENST00000257430.4:c.4552_4556del	p.Lys1518CysfsTer13	p.K1518Cfs*13	ENST00000257430	NM_000038.5	1518	AAAGAt/t																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185165732	185165732	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0082370-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	132	354	0	ENST00000265026.3:c.1007T>G	p.Ile336Arg	p.I336R	ENST00000265026	NM_004721.4	336	aTa/aGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0082372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	315	380	3	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922324	178922324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793732		P-0082372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	67	228	0	ENST00000263967.3:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000263967	NM_006218.2	365	Gaa/Aaa																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625386	69625386	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782272422		P-0082372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	155	419	0	ENST00000334134.2:c.407C>T	p.Thr136Met	p.T136M	ENST00000334134	NM_005247.2	136	aCg/aTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528052	157528052	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747819482		P-0082372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	222	445	2	ENST00000346085.5:c.5777G>A	p.Arg1926Gln	p.R1926Q	ENST00000346085	NM_020732.3	1926	cGa/cAa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58678029	58678029	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	205	420	3	ENST00000305921.3:c.254C>G	p.Ser85Trp	p.S85W	ENST00000305921	NM_003620.3	85	tCg/tGg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23652447	23652447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	165	319	1	ENST00000261584.4:c.32G>A	p.Cys11Tyr	p.C11Y	ENST00000261584	NM_024675.3	11	tGt/tAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201686	66201686	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	50	346	0	ENST00000273854.3:c.2816C>A	p.Pro939Gln	p.P939Q	ENST00000273854	NM_004439.5	939	cCa/cAa																																																																															
PGR	5241	MSKCC	GRCh37	11	100920766	100920766	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	29	329	0	ENST00000325455.5:c.2382C>G	p.Phe794Leu	p.F794L	ENST00000325455	NM_001202474.3	794	ttC/ttG																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11958309	11958310	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0082372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			31	42	194	0	ENST00000353533.5:c.218+2dup		p.X73_splice	ENST00000353533	NM_003010.3	73																																																																																
MPL	4352	MSKCC	GRCh37	1	43805151	43805151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	175	451	0	ENST00000372470.3:c.601C>A	p.His201Asn	p.H201N	ENST00000372470	NM_005373.2	201	Cac/Aac																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519912		P-0082377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	9	207	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743842	46743842	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	96	496	0	ENST00000371975.4:c.2132A>G	p.Asp711Gly	p.D711G	ENST00000371975	NM_003579.3	711	gAt/gGt																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47602377	47602377	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	57	306	0	ENST00000263735.4:c.430A>G	p.Ile144Val	p.I144V	ENST00000263735	NM_002354.2	144	Atc/Gtc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46740301	46740301	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0082377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	106	407	0	ENST00000371975.4:c.1781A>T	p.Asp594Val	p.D594V	ENST00000371975	NM_003579.3	594	gAc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	247	510	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	185	357	0	ENST00000397062.3:c.101G>A	p.Arg34Gln	p.R34Q	ENST00000397062	NM_006164.4	34	cGa/cAa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123229229	123229229	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0082380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			75	167	164	0	ENST00000218089.9:c.3713C>G	p.Ser1238Ter	p.S1238*	ENST00000218089	NM_001042749.1	1238	tCa/tGa																																																																															
CIC	23152	MSKCC	GRCh37	19	42796325	42796325	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1135401825		P-0082380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	208	505	0	ENST00000575354.2:c.2974C>T	p.Gln992Ter	p.Q992*	ENST00000575354	NM_015125.3	992	Cag/Tag																																																																															
ATRX	546	MSKCC	GRCh37	X	76849300	76849302	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs782391479		P-0082380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	28	190	0	ENST00000373344.5:c.5974_5976del	p.Ser1992del	p.S1992del	ENST00000373344	NM_000489.3	1992	TCT/-																																																																															
CUL3	8452	MSKCC	GRCh37	2	225339071	225339071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	122	343	0	ENST00000264414.4:c.2198G>A	p.Arg733Gln	p.R733Q	ENST00000264414	NM_003590.4	733	cGa/cAa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176176059	176176059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	187	369	0	ENST00000367669.3:c.56C>T	p.Ser19Leu	p.S19L	ENST00000367669	NM_022457.5	19	tCg/tTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860350	151860350	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1414926589		P-0082380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	200	413	1	ENST00000262189.6:c.10312G>A	p.Gly3438Ser	p.G3438S	ENST00000262189	NM_170606.2	3438	Ggc/Agc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778996	3778996	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	261	452	0	ENST00000262367.5:c.6052C>A	p.Pro2018Thr	p.P2018T	ENST00000262367	NM_004380.2	2018	Ccc/Acc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125507355	125507355	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0082380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	149	263	1	ENST00000428830.2:c.730A>T	p.Lys244Ter	p.K244*	ENST00000428830	NM_001114121.2	244	Aaa/Taa																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4089876	4090633	+	coding_sequence_variant,3_prime_UTR_variant	Frame_Shift_Del	DEL	GCCTTCCACAGGGGCAGAGATGGTGGCGGGGAGGACACAGAGGGAAACCAGGTGGCATTTCCCTTCTTTTTTTTCAGTAGCCTTGCTCTGTCACCCATGCCGGAGCGCACTGGCACCATCGAGGTTCACTGCAGCCTCAATCCCCTGGGTTCAAGCGATCCTCCCGCCTTAGGCTCCCAAAGCACTGGAATGACAGGCATGAGCCGCCGCCCCCAGCCTCACTCTCCTTCCTTTTGGTGAGAGCCGCCATCGCCTGGGGGCTCACTGCAGGTCTTCATCCCTTGACCCAAAGGGAGAGGCGAGCTCTCCCTAAGGGAGGGCCCTGCGCCCTCCAGCCTCGGCGCCCGGCGATGCGGGTCAGCTCAGGGATGTCCTCTCCGTGCTGGGCTGAAGCAAAGCCCAGCACCCAACGCCGAACGGAAGAAAGAAGCAGGATGGCGCGGTTTGCTTTTTCTCTCCCTGTTTTGTTTTGTAACCTAAGGAAGCAGAGCCTCTGAGACCACACACAGCAGCGTCGCCCGTCCCCAGAGGCACCCCGGCCAGGACGGGCAGGAGAGGAGACCCCCGTTCCTGCATGCGCTGTCGCCCCGCCACGGTGCTCTCCGCAGGGGTGAGGCAGGAGGGTGGGTGGAGGCGCCAGCCTGTCCTCAGCTGGAAGGGCGGGGCATGGACAGGGACGGTGGGCAGGTCACCAGCGGGACGCAGGGAGCCCGGCCACTGTCACACGGCGGTGCGCGTGGGTGTGCCGGGCTGGTTCA	GCCTTCCACAGGGGCAGAGATGGTGGCGGGGAGGACACAGAGGGAAACCAGGTGGCATTTCCCTTCTTTTTTTTCAGTAGCCTTGCTCTGTCACCCATGCCGGAGCGCACTGGCACCATCGAGGTTCACTGCAGCCTCAATCCCCTGGGTTCAAGCGATCCTCCCGCCTTAGGCTCCCAAAGCACTGGAATGACAGGCATGAGCCGCCGCCCCCAGCCTCACTCTCCTTCCTTTTGGTGAGAGCCGCCATCGCCTGGGGGCTCACTGCAGGTCTTCATCCCTTGACCCAAAGGGAGAGGCGAGCTCTCCCTAAGGGAGGGCCCTGCGCCCTCCAGCCTCGGCGCCCGGCGATGCGGGTCAGCTCAGGGATGTCCTCTCCGTGCTGGGCTGAAGCAAAGCCCAGCACCCAACGCCGAACGGAAGAAAGAAGCAGGATGGCGCGGTTTGCTTTTTCTCTCCCTGTTTTGTTTTGTAACCTAAGGAAGCAGAGCCTCTGAGACCACACACAGCAGCGTCGCCCGTCCCCAGAGGCACCCCGGCCAGGACGGGCAGGAGAGGAGACCCCCGTTCCTGCATGCGCTGTCGCCCCGCCACGGTGCTCTCCGCAGGGGTGAGGCAGGAGGGTGGGTGGAGGCGCCAGCCTGTCCTCAGCTGGAAGGGCGGGGCATGGACAGGGACGGTGGGCAGGTCACCAGCGGGACGCAGGGAGCCCGGCCACTGTCACACGGCGGTGCGCGTGGGTGTGCCGGGCTGGTTCA	-			P-0082380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			4	120	0	0				ENST00000262948	NM_030662.3	389																																																																																
DICER1	23405	MSKCC	GRCh37	14	95593074	95593074	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0082380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	268	313	0	ENST00000343455.3:c.746A>T	p.Gln249Leu	p.Q249L	ENST00000343455	NM_177438.2	249	cAg/cTg																																																																															
FYN	2534	MSKCC	GRCh37	6	112035596	112035596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	136	292	0	ENST00000368678.4:c.298G>A	p.Asp100Asn	p.D100N	ENST00000368678		100	Gac/Aac																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551340	150551340	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0082380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	796	413	0	ENST00000369026.2:c.667A>C	p.Asn223His	p.N223H	ENST00000369026	NM_021960.4	223	Aac/Cac																																																																															
MPL	4352	MSKCC	GRCh37	1	43805006	43805006	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	190	379	0	ENST00000372470.3:c.456C>G	p.Ile152Met	p.I152M	ENST00000372470	NM_005373.2	152	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0043977-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			538	387	510	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
TERT	7015	MSKCC	GRCh37	5	1279522	1279522	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368430301		P-0043977-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1275	217	731	0	ENST00000310581.5:c.2014C>T	p.Arg672Cys	p.R672C	ENST00000310581	NM_198253.2	672	Cgc/Tgc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376135	225376135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043977-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			723	140	424	0	ENST00000264414.4:c.819G>A	p.Met273Ile	p.M273I	ENST00000264414	NM_003590.4	273	atG/atA																																																																															
APC	324	MSKCC	GRCh37	5	112170682	112170682	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1064794226		P-0043977-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			419	96	358	0	ENST00000257430.4:c.1778G>A	p.Trp593Ter	p.W593*	ENST00000257430	NM_000038.5	593	tGg/tAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023073	27023076	+	frameshift_variant	Frame_Shift_Del	DEL	GCCC	GCCC	-			P-0043977-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			134	45	74	0	ENST00000324856.7:c.179_182del	p.Gly60AlafsTer40	p.G60Afs*40	ENST00000324856	NM_006015.4	60	gGCCCc/gc																																																																															
TP63	8626	MSKCC	GRCh37	3	189607188	189607188	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043977-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1235	175	655	0	ENST00000264731.3:c.1567C>G	p.Gln523Glu	p.Q523E	ENST00000264731	NM_003722.4	523	Cag/Gag																																																																															
HGF	3082	MSKCC	GRCh37	7	81392053	81392053	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043977-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			314	49	230	0	ENST00000222390.5:c.224C>G	p.Thr75Ser	p.T75S	ENST00000222390	NM_000601.4	75	aCt/aGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0049683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	87	272	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936083	178936083	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519927		P-0049683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	76	329	0	ENST00000263967.3:c.1625A>G	p.Glu542Gly	p.E542G	ENST00000263967	NM_006218.2	542	gAa/gGa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115916	8115995	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	CGATGCACCCGCCATCCAGCCTGTCCTTTGGACCACACCACCCCTCCAGCATGGTCACCGCCATGGGTTAGAGCCCTGCT	CGATGCACCCGCCATCCAGCCTGTCCTTTGGACCACACCACCCCTCCAGCATGGTCACCGCCATGGGTTAGAGCCCTGCT	-			P-0049683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	53	418	0	ENST00000346208.3:c.1268_*15del		p.*423*	ENST00000346208		421																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0075702-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			494	111	343	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0075702-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	113	272	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0075702-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			482	120	519	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575175	48575175	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0075702-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			275	85	336	0	ENST00000342988.3:c.369T>A	p.Cys123Ter	p.C123*	ENST00000342988	NM_005359.5	123	tgT/tgA																																																																															
SDHA	6389	MSKCC	GRCh37	5	251153	251153	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075702-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	64	166	0	ENST00000264932.6:c.1598A>T	p.Gln533Leu	p.Q533L	ENST00000264932	NM_004168.2	533	cAa/cTa																																																																															
EZH1	2145	MSKCC	GRCh37	17	40865356	40865356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075702-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			502	97	380	0	ENST00000428826.2:c.1075G>T	p.Gly359Cys	p.G359C	ENST00000428826		359	Ggt/Tgt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243800934	243800934	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs80155418		P-0075702-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			299	154	296	0	ENST00000263826.5:c.540G>T	p.Lys180Asn	p.K180N	ENST00000263826	NM_005465.4	180	aaG/aaT																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554732	63554733	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0075702-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			525	118	366	0	ENST00000307078.5:c.5_6dup	p.Ser3ValfsTer6	p.S3Vfs*6	ENST00000307078	NM_004655.3	2	-/GT																																																																															
B2M	567	MSKCC	GRCh37	15	45003480	45003792	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	GGGCGCGCACCCCAGATCGGAGGGCGCCGATGTACAGACAGCAAACTCACCCAGTCTAGTGCATGCCTTCTTAAACATCACGAGACTCTAAGAAAAGGAAACTGAAAACGGGAAAGTCCCTCTCTCTAACCTGGCACTGCGTCGCTGGCTTGGAGACAGGTGACGGTCCCTGCGGGCCTTGTCCTGATTGGCTGGGCACGCGTTTAATATAAGTGGAGGCGTCGCGCTGGCGGGCATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGCTACTCTCTCTTTCT	GGGCGCGCACCCCAGATCGGAGGGCGCCGATGTACAGACAGCAAACTCACCCAGTCTAGTGCATGCCTTCTTAAACATCACGAGACTCTAAGAAAAGGAAACTGAAAACGGGAAAGTCCCTCTCTCTAACCTGGCACTGCGTCGCTGGCTTGGAGACAGGTGACGGTCCCTGCGGGCCTTGTCCTGATTGGCTGGGCACGCGTTTAATATAAGTGGAGGCGTCGCGCTGGCGGGCATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGCTACTCTCTCTTTCT	-			P-0075702-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			25	121	24	0				ENST00000558401	NM_004048.2																																																																																	
STAG2	10735	MSKCC	GRCh37	X	123224478	123224478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075702-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			437	77	361	0	ENST00000218089.9:c.3331C>A	p.His1111Asn	p.H1111N	ENST00000218089	NM_001042749.1	1111	Cac/Aac																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782172	9782172	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075702-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			471	66	416	0	ENST00000377346.4:c.2195A>C	p.Gln732Pro	p.Q732P	ENST00000377346	NM_005026.3	732	cAg/cCg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163266	32163266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	78	510	0	ENST00000375023.3:c.5960C>T	p.Pro1987Leu	p.P1987L	ENST00000375023	NM_004557.3	1987	cCc/cTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			292	53	233	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45856014	45856014	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751084702		P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			417	76	408	0	ENST00000391945.4:c.1892G>A	p.Arg631His	p.R631H	ENST00000391945	NM_000400.3	631	cGc/cAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			408	188	360	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587776934		P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			539	73	394	0	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288710	15288710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			186	12	258	0	ENST00000263388.2:c.4029del	p.Cys1344ValfsTer76	p.C1344Vfs*76	ENST00000263388	NM_000435.2	1343	ccC/cc																																																																															
ATRX	546	MSKCC	GRCh37	X	76890149	76890150	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			375	59	284	1	ENST00000373344.5:c.4744dup	p.Thr1582AsnfsTer19	p.T1582Nfs*19	ENST00000373344	NM_000489.3	1582	aca/aAca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720712	89720712	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			83	12	73	0	ENST00000371953.3:c.867del	p.Val290Ter	p.V290*	ENST00000371953	NM_000314.4	288	gAa/ga																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964077	28964077	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			485	30	348	0	ENST00000282397.4:c.1825del	p.Met609TrpfsTer16	p.M609Wfs*16	ENST00000282397	NM_002019.4	609	Atg/tg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			296	126	296	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100980	41100980	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868706902		P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			522	83	392	0	ENST00000373198.4:c.1376G>A	p.Arg459Gln	p.R459Q	ENST00000373198	NM_133170.3	459	cGg/cAg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18491390	18491390	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1377942847		P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			335	44	267	0	ENST00000266497.5:c.1309del	p.Ile437TyrfsTer5	p.I437Yfs*5	ENST00000266497		435	Aaa/aa																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885145	111885145	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			496	95	413	0	ENST00000341259.2:c.1038del	p.Leu347CysfsTer26	p.L347Cfs*26	ENST00000341259	NM_005475.2	345	Ggg/gg																																																																															
AXL	558	MSKCC	GRCh37	19	41743896	41743896	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			480	77	437	0	ENST00000301178.4:c.836del	p.Pro279GlnfsTer18	p.P279Qfs*18	ENST00000301178	NM_021913.4	277	gaC/ga																																																																															
TET2	54790	MSKCC	GRCh37	4	106193931	106193931	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1235228377		P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			514	85	317	0	ENST00000380013.4:c.4393C>T	p.Arg1465Ter	p.R1465*	ENST00000380013	NM_001127208.2	1465	Cga/Tga																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041629	14041629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777184889		P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			572	38	391	1	ENST00000311895.7:c.2176C>T	p.Arg726Cys	p.R726C	ENST00000311895	NM_005236.2	726	Cgc/Tgc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99163087	99163087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	77	279	0	ENST00000074304.5:c.1093G>A	p.Ala365Thr	p.A365T	ENST00000074304	NM_001134224.1	365	Gca/Aca																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			550	36	390	1	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497299	149497299	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142762235		P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	57	339	0	ENST00000261799.4:c.3019G>A	p.Val1007Ile	p.V1007I	ENST00000261799	NM_002609.3	1007	Gtc/Atc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281155	15281155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			386	75	373	0	ENST00000263388.2:c.5101G>A	p.Ala1701Thr	p.A1701T	ENST00000263388	NM_000435.2	1701	Gcg/Acg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030223	180030223	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200835339		P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			447	62	375	0	ENST00000261937.6:c.4061G>A	p.Arg1354His	p.R1354H	ENST00000261937	NM_182925.4	1354	cGc/cAc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			400	122	287	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100172	157100172	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1235492881		P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			213	37	291	2	ENST00000346085.5:c.1114del	p.Arg372GlyfsTer7	p.R372Gfs*7	ENST00000346085	NM_020732.3	370	tCc/tc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619792	1619792	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			474	54	376	0	ENST00000344749.5:c.1154del	p.Gly385ValfsTer9	p.G385Vfs*9	ENST00000344749	NM_001136139.2	385	gGt/gt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423656	88423656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			402	33	333	0	ENST00000360948.2:c.2179G>A	p.Gly727Arg	p.G727R	ENST00000360948	NM_001012338.2	727	Gga/Aga																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39317318	39317318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			419	71	316	0	ENST00000373001.3:c.868G>A	p.Asp290Asn	p.D290N	ENST00000373001	NM_022157.3	290	Gat/Aat																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976166	18976166	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1010786745		P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			531	97	465	0	ENST00000262803.5:c.2926G>A	p.Val976Met	p.V976M	ENST00000262803	NM_002911.3	976	Gtg/Atg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214714	36214714	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			377	28	313	0	ENST00000222270.7:c.3145del	p.Ala1049ArgfsTer133	p.A1049Rfs*133	ENST00000222270	NM_014727.1	1047	cGg/cg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18439843	18439843	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			303	35	242	0	ENST00000266497.5:c.745del	p.Cys249AlafsTer4	p.C249Afs*4	ENST00000266497		247	tcT/tc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348205	348205	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750617218		P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			558	37	433	0	ENST00000262320.3:c.1301C>T	p.Pro434Leu	p.P434L	ENST00000262320	NM_003502.3	434	cCg/cTg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245725	41245725	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs397508911		P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			447	32	367	0	ENST00000357654.3:c.1823del	p.Lys608ArgfsTer4	p.K608Rfs*4	ENST00000357654	NM_007294.3	608	aAg/ag																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615697	1615698	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs757261438		P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			434	75	442	0	ENST00000344749.5:c.1573dup	p.Arg525ProfsTer28	p.R525Pfs*28	ENST00000344749	NM_001136139.2	525	cgg/cCgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256481	16256481	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757806135		P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			613	89	398	0	ENST00000375759.3:c.3746G>A	p.Arg1249His	p.R1249H	ENST00000375759	NM_015001.2	1249	cGc/cAc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129060	152129060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	24	327	0	ENST00000206249.3:c.13C>A	p.Leu5Ile	p.L5I	ENST00000206249	NM_000125.3	5	Ctc/Atc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045882	47045882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			523	74	438	0	ENST00000329236.7:c.2443C>T	p.Arg815Trp	p.R815W	ENST00000329236	NM_001204466.1	815	Cgg/Tgg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660270	227660270	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	24	374	2	ENST00000305123.5:c.3185del	p.Gly1062AlafsTer8	p.G1062Afs*8	ENST00000305123	NM_005544.2	1062	gGc/gc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63845589	63845589	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759435915		P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			546	82	378	0	ENST00000279873.7:c.1328G>A	p.Arg443His	p.R443H	ENST00000279873	NM_032199.2	443	cGc/cAc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115273268	115273268	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			376	48	320	0	ENST00000438362.2:c.1190G>A	p.Gly397Asp	p.G397D	ENST00000438362	NM_001242891.1	397	gGt/gAt																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240035	41240035	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1238982941		P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			108	14	124	0	ENST00000379561.5:c.315del	p.Leu106CysfsTer227	p.L106Cfs*227	ENST00000379561	NM_002015.3	105	ggG/gg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715721	30715721	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893816		P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			521	87	336	0	ENST00000359013.4:c.1454G>A	p.Arg485His	p.R485H	ENST00000359013	NM_001024847.2	485	cGc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70352237	70352237	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776011599		P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			466	96	379	0	ENST00000374080.3:c.4264C>T	p.Arg1422Cys	p.R1422C	ENST00000374080		1422	Cgc/Tgc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2047439	2047439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			317	46	274	0	ENST00000349721.2:c.1001C>T	p.Pro334Leu	p.P334L	ENST00000349721	NM_003070.3	334	cCg/cTg																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61324581	61324581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			553	30	390	0	ENST00000283752.5:c.535G>A	p.Ala179Thr	p.A179T	ENST00000283752	NM_006919.2	179	Gca/Aca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229373	36229373	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			589	39	443	0	ENST00000222270.7:c.8063A>G	p.Tyr2688Cys	p.Y2688C	ENST00000222270	NM_014727.1	2688	tAc/tGc																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239634	31239634	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			78	21	81	0	ENST00000376228.5:c.85A>G	p.Met29Val	p.M29V	ENST00000376228	NM_002117.5	29	Atg/Gtg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37061800	37061800	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			354	126	318	0	ENST00000231790.2:c.885-1G>A		p.X295_splice	ENST00000231790	NM_000249.3	295																																																																																
IKBKE	9641	MSKCC	GRCh37	1	206664172	206664172	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			459	28	303	0	ENST00000367120.3:c.1714C>T	p.Gln572Ter	p.Q572*	ENST00000367120	NM_014002.3	572	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101486	27101486	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			490	84	385	1	ENST00000324856.7:c.4771del	p.Leu1591CysfsTer21	p.L1591Cfs*21	ENST00000324856	NM_006015.4	1590	Ccc/cc																																																																															
CASP8	841	MSKCC	GRCh37	2	202149997	202149997	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			592	93	441	0	ENST00000358485.4:c.1438T>A	p.Tyr480Asn	p.Y480N	ENST00000358485	NM_001080125.1	480	Tac/Aac																																																																															
MTOR	2475	MSKCC	GRCh37	1	11303201	11303201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			507	80	368	0	ENST00000361445.4:c.1382C>T	p.Ala461Val	p.A461V	ENST00000361445	NM_004958.3	461	gCg/gTg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45795007	45795007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			620	35	405	0	ENST00000372115.3:c.1579G>A	p.Ala527Thr	p.A527T	ENST00000372115	NM_001048171.1	527	Gca/Aca																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125499143	125499143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			365	71	356	0	ENST00000428830.2:c.306G>A	p.Met102Ile	p.M102I	ENST00000428830	NM_001114121.2	102	atG/atA																																																																															
ATM	472	MSKCC	GRCh37	11	108119746	108119747	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			398	64	320	1	ENST00000278616.4:c.1156dup	p.Arg386LysfsTer21	p.R386Kfs*21	ENST00000278616	NM_000051.3	384	-/A																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527529	157527529	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			630	34	414	0	ENST00000346085.5:c.5254A>G	p.Ser1752Gly	p.S1752G	ENST00000346085	NM_020732.3	1752	Agc/Ggc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817879	3817879	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			540	35	349	0	ENST00000262367.5:c.3092A>G	p.Gln1031Arg	p.Q1031R	ENST00000262367	NM_004380.2	1031	cAa/cGa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390976	89390976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079670-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			407	55	272	0	ENST00000336596.2:c.1042C>T	p.Pro348Ser	p.P348S	ENST00000336596	NM_005233.5	348	Ccc/Tcc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836816	151836816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080278-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	17	369	1	ENST00000262189.6:c.14404G>A	p.Gly4802Arg	p.G4802R	ENST00000262189	NM_170606.2	4802	Ggg/Agg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460466	8460466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080278-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	19	412	0	ENST00000356435.5:c.3820G>A	p.Val1274Ile	p.V1274I	ENST00000356435		1274	Gtc/Atc																																																																															
HGF	3082	MSKCC	GRCh37	7	81350141	81350141	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080278-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			71	16	350	0	ENST00000222390.5:c.1191A>C	p.Lys397Asn	p.K397N	ENST00000222390	NM_000601.4	397	aaA/aaC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0081128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	57	383	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118380797	118380797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	35	406	0	ENST00000534358.1:c.11035G>A	p.Asp3679Asn	p.D3679N	ENST00000534358	NM_005933.3	3679	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs1057517840		P-0081697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	229	622	0	ENST00000269305.4:c.626_627del	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0081697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	22	350	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121912580		P-0081697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	66	421	0	ENST00000342988.3:c.1157G>T	p.Gly386Val	p.G386V	ENST00000342988	NM_005359.5	386	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	35	369	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982134	201982134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			751	80	620	0	ENST00000359651.3:c.658G>A	p.Asp220Asn	p.D220N	ENST00000359651		220	Gat/Aat																																																																															
JUN	3725	MSKCC	GRCh37	1	59248116	59248116	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			769	93	703	0	ENST00000371222.2:c.627C>G	p.His209Gln	p.H209Q	ENST00000371222	NM_002228.3	209	caC/caG																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821647	72821647	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376628640		P-0081697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	49	431	0	ENST00000268489.5:c.10528G>A	p.Gly3510Ser	p.G3510S	ENST00000268489	NM_006885.3	3510	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0082285-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	42	508	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0082324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	413	466	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0082324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	330	595	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
ATR	545	MSKCC	GRCh37	3	142272508	142272508	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	64	436	0	ENST00000350721.4:c.2607G>C	p.Leu869Phe	p.L869F	ENST00000350721	NM_001184.3	869	ttG/ttC																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47606944	47606944	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	83	388	0	ENST00000263735.4:c.694G>C	p.Asp232His	p.D232H	ENST00000263735	NM_002354.2	232	Gac/Cac																																																																															
POLE	5426	MSKCC	GRCh37	12	133214652	133214652	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0082324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	109	503	0	ENST00000320574.5:c.5626A>C	p.Lys1876Gln	p.K1876Q	ENST00000320574	NM_006231.2	1876	Aag/Cag																																																																															
ATRX	546	MSKCC	GRCh37	X	76938263	76938264	+	missense_variant	Missense_Mutation	DNP	TC	TC	CT			P-0082324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	129	233	0	ENST00000373344.5:c.2484_2485delinsAG	p.Met828_Ser829delinsIleGly	p.M828_S829delinsIG	ENST00000373344	NM_000489.3	828	atGAgt/atAGgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0082328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	100	410	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0082328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	154	460	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175322	112175322	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs1114167578		P-0082328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	309	450	0	ENST00000257430.4:c.4031C>G	p.Ser1344Ter	p.S1344*	ENST00000257430	NM_000038.5	1344	tCa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0082328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	80	308	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117606	70117606	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	87	621	0	ENST00000245479.2:c.75del	p.Met26CysfsTer35	p.M26Cfs*35	ENST00000245479	NM_000346.3	25	aCc/ac																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986607	36986607	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768666323		P-0082328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	106	428	0	ENST00000354822.5:c.1082C>T	p.Ala361Val	p.A361V	ENST00000354822	NM_001079668.2	361	gCg/gTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435834	110435834	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	140	479	0	ENST00000375856.3:c.2567C>A	p.Ala856Asp	p.A856D	ENST00000375856	NM_003749.2	856	gCc/gAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117564	70117645	+	frameshift_variant	Frame_Shift_Del	DEL	CCGACGAGCAGGAGAAGGGCCTGTCCGGCGCCCCCAGCCCCACCATGTCCGAGGACTCCGCGGGCTCGCCCTGCCCGTCGGG	CCGACGAGCAGGAGAAGGGCCTGTCCGGCGCCCCCAGCCCCACCATGTCCGAGGACTCCGCGGGCTCGCCCTGCCCGTCGGG	-			P-0082328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	145	516	0	ENST00000245479.2:c.33_114del	p.Asp12ProfsTer22	p.D12Pfs*22	ENST00000245479	NM_000346.3	11	aCCGACGAGCAGGAGAAGGGCCTGTCCGGCGCCCCCAGCCCCACCATGTCCGAGGACTCCGCGGGCTCGCCCTGCCCGTCGGGc/ac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0082358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	212	401	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0082358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	293	453	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540380	187540380	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202097333		P-0082358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	244	502	0	ENST00000441802.2:c.7360C>T	p.Arg2454Trp	p.R2454W	ENST00000441802	NM_005245.3	2454	Cgg/Tgg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946937	71946937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	258	560	0	ENST00000298229.2:c.2786C>T	p.Ser929Phe	p.S929F	ENST00000298229	NM_001567.3	929	tCc/tTc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	142950020	142950020	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	103	312	0	ENST00000262992.4:c.2690A>G	p.Lys897Arg	p.K897R	ENST00000262992	NM_001101669.1	897	aAg/aGg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37863273	37863273	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0082358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	380	486	0	ENST00000269571.5:c.104T>G	p.Leu35Arg	p.L35R	ENST00000269571		35	cTc/cGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0082362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	2056	333	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0082362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	70	486	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0082362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	143	564	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
ERG	2078	MSKCC	GRCh37	21	39762965	39762965	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0082362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	34	272	0	ENST00000288319.7:c.872-1G>C		p.X291_splice	ENST00000288319	NM_182918.3	291																																																																																
DICER1	23405	MSKCC	GRCh37	14	95570384	95570384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	50	389	0	ENST00000343455.3:c.3349G>A	p.Glu1117Lys	p.E1117K	ENST00000343455	NM_177438.2	1117	Gaa/Aaa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350938	89350938	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	63	400	0	ENST00000301030.4:c.2012C>G	p.Ala671Gly	p.A671G	ENST00000301030	NM_001256183.1	671	gCt/gGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0044937-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	248	375	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044937-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			592	55	360	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519989		P-0044937-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			263	83	361	0	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																															
AR	367	MSKCC	GRCh37	X	66942700	66942700	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs200801099		P-0044937-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	21	347	0	ENST00000374690.3:c.2481C>A	p.Phe827Leu	p.F827L	ENST00000374690	NM_000044.3	827	ttC/ttA																																																																															
APC	324	MSKCC	GRCh37	5	112173992	112173992	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1114167559		P-0044937-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			263	121	519	0	ENST00000257430.4:c.2701C>T	p.Gln901Ter	p.Q901*	ENST00000257430	NM_000038.5	901	Cag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120911	115120911	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1029030166		P-0044937-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			422	31	447	0	ENST00000257566.3:c.95C>T	p.Ala32Val	p.A32V	ENST00000257566	NM_016569.3	32	gCg/gTg																																																																															
AXL	558	MSKCC	GRCh37	19	41743886	41743886	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044937-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			463	31	458	0	ENST00000301178.4:c.821G>T	p.Gly274Val	p.G274V	ENST00000301178	NM_021913.4	274	gGa/gTa																																																																															
NBN	4683	MSKCC	GRCh37	8	90990455	90990455	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044937-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			334	56	268	0	ENST00000265433.3:c.577del	p.Ile193LeufsTer38	p.I193Lfs*38	ENST00000265433	NM_002485.4	193	Att/tt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202869	16202869	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757023093		P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			239	40	438	0	ENST00000375759.3:c.577C>T	p.Arg193Cys	p.R193C	ENST00000375759	NM_015001.2	193	Cgc/Tgc																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230493045	230493045	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			155	26	413	0	ENST00000525115.1:c.147del	p.Ser50AlafsTer44	p.S50Afs*44	ENST00000525115		49	ccC/cc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65321246	65321246	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773295685		P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			256	20	445	0	ENST00000342505.4:c.1594C>T	p.Arg532Cys	p.R532C	ENST00000342505	NM_002227.2	532	Cgc/Tgc																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594883	47594883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780075355		P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			210	49	539	1	ENST00000395288.2:c.1156del	p.Glu386ArgfsTer27	p.E386Rfs*27	ENST00000395288	NM_016506.5	386	Gag/ag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	432249	432249	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			240	39	347	0	ENST00000399788.2:c.2274del	p.Asp759IlefsTer2	p.D759Ifs*2	ENST00000399788	NM_001042603.1	758	aaA/aa																																																																															
MDM2	4193	MSKCC	GRCh37	12	69222710	69222710	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1387843274		P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			204	36	365	0	ENST00000462284.1:c.683C>T	p.Pro228Leu	p.P228L	ENST00000462284	NM_002392.5	228	cCg/cTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			271	24	428	1	ENST00000380152.3:c.5351del	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																																																															
RB1	5925	MSKCC	GRCh37	13	49030479	49030479	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			209	42	349	0	ENST00000267163.4:c.1959del	p.Val654CysfsTer4	p.V654Cfs*4	ENST00000267163	NM_000321.2	652	Aaa/aa																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			140	20	422	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	64	553	4	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251109	99251109	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs768253655		P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			145	29	459	0	ENST00000268035.6:c.418del	p.Ala140ProfsTer20	p.A140Pfs*20	ENST00000268035	NM_000875.3	138	cGg/cg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1400980130		P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			221	52	462	0	ENST00000264010.4:c.2070del	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																																																															
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			206	50	438	0	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347553	89347553	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	48	466	0	ENST00000301030.4:c.5397del	p.Glu1800ArgfsTer163	p.E1800Rfs*163	ENST00000301030	NM_001256183.1	1799	ccC/cc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349355	89349356	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			209	40	516	0	ENST00000301030.4:c.3594dup	p.Glu1199ArgfsTer5	p.E1199Rfs*5	ENST00000301030	NM_001256183.1	1198	-/A																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879580	37879580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			169	35	346	0	ENST00000269571.5:c.1955C>T	p.Thr652Met	p.T652M	ENST00000269571		652	aCg/aTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			120	91	586	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
CIC	23152	MSKCC	GRCh37	19	42795885	42795886	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			127	35	547	0	ENST00000575354.2:c.2880dup	p.Ser961GlnfsTer190	p.S961Qfs*190	ENST00000575354	NM_015125.3	958	-/C																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731468	47731468	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1284528511		P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			118	27	375	0	ENST00000449228.1:c.324del	p.Phe109SerfsTer120	p.F109Sfs*120	ENST00000449228	NM_001127240.2	108	ggG/gg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220081	5220081	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs542361035		P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			118	25	462	0	ENST00000357368.4:c.3634C>T	p.Arg1212Cys	p.R1212C	ENST00000357368	NM_002850.3	1212	Cgc/Tgc																																																																															
CASP8	841	MSKCC	GRCh37	2	202149798	202149799	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	37	576	0	ENST00000358485.4:c.1245dup	p.Ile416TyrfsTer8	p.I416Yfs*8	ENST00000358485	NM_001080125.1	413	-/T																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662226	227662226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			136	43	503	0	ENST00000305123.5:c.1229G>A	p.Arg410Gln	p.R410Q	ENST00000305123	NM_005544.2	410	cGg/cAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030691	48030692	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			256	16	478	0	ENST00000234420.5:c.3312dup	p.Gly1105TrpfsTer3	p.G1105Wfs*3	ENST00000234420	NM_000179.2	1102	act/acTt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			130	19	488	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
ERG	2078	MSKCC	GRCh37	21	39764346	39764347	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			184	32	381	0	ENST00000288319.7:c.765dup	p.Arg256GlnfsTer29	p.R256Qfs*29	ENST00000288319	NM_182918.3	255	-/C																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446834	29446834	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375016509		P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			81	14	412	0	ENST00000544604.2:c.2665C>T	p.Arg889Trp	p.R889W	ENST00000544604	NM_001206998.1	889	Cgg/Tgg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	53	462	2	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440363	52440363	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			151	37	460	1	ENST00000460680.1:c.689T>C	p.Leu230Pro	p.L230P	ENST00000460680	NM_004656.3	230	cTg/cCg																																																																															
TET2	54790	MSKCC	GRCh37	4	106158346	106158346	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	23	497	0	ENST00000380013.4:c.3247C>T	p.Gln1083Ter	p.Q1083*	ENST00000380013	NM_001127208.2	1083	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557927	187557927	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs369805914		P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	74	506	0	ENST00000441802.2:c.3784C>T	p.Arg1262Ter	p.R1262*	ENST00000441802	NM_005245.3	1262	Cga/Tga																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931451	131931452	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			230	42	384	1	ENST00000265335.6:c.2164_2165dup	p.Glu723ArgfsTer14	p.E723Rfs*14	ENST00000265335		719	cta/ctAAa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523340	176523341	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			143	32	515	0	ENST00000292408.4:c.2003_2004del	p.His668ProfsTer3	p.H668Pfs*3	ENST00000292408	NM_213647.1	666	tAC/t																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			216	62	397	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202351	138202351	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			195	26	419	1	ENST00000237289.4:c.2274del	p.Lys759SerfsTer57	p.K759Sfs*57	ENST00000237289	NM_001270507.1	756	gaC/ga																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324862	31324862	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			215	18	579	0	ENST00000412585.2:c.73+1G>A		p.X25_splice	ENST00000412585	NM_005514.6	25																																																																																
SMO	6608	MSKCC	GRCh37	7	128829075	128829075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1247591045		P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			50	22	314	1	ENST00000249373.3:c.88del	p.Ala30ArgfsTer25	p.A30Rfs*25	ENST00000249373	NM_005631.4	28	cGg/cg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			201	57	374	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729775	41729775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			162	43	505	0	ENST00000242208.4:c.754G>A	p.Ala252Thr	p.A252T	ENST00000242208	NM_002192.2	252	Gcc/Acc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370754	55370754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			116	13	417	0	ENST00000297316.4:c.56C>T	p.Ala19Val	p.A19V	ENST00000297316	NM_022454.3	19	gCg/gTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864658	68864658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1418006656		P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			87	45	257	0	ENST00000288368.4:c.29G>A	p.Arg10His	p.R10H	ENST00000288368	NM_024870.2	10	cGc/cAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992720	68992721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs774202059		P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	47	403	3	ENST00000288368.4:c.1693dup	p.Ser565PhefsTer3	p.S565Ffs*3	ENST00000288368	NM_024870.2	562	cgt/cgTt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981846	70981846	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			96	47	509	0	ENST00000276594.2:c.250C>A	p.Leu84Ile	p.L84I	ENST00000276594	NM_024504.3	84	Cta/Ata																																																																															
RXRA	6256	MSKCC	GRCh37	9	137320989	137320989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			100	18	431	0	ENST00000481739.1:c.946C>T	p.Arg316Cys	p.R316C	ENST00000481739	NM_002957.4	316	Cgc/Tgc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			170	25	458	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
ATRX	546	MSKCC	GRCh37	X	76949319	76949320	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			238	42	346	0	ENST00000373344.5:c.477dup	p.Arg160ThrfsTer29	p.R160Tfs*29	ENST00000373344	NM_000489.3	159	-/A																																																																															
LMO1	4004	MSKCC	GRCh37	11	8251868	8251868	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs756472074		P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			110	28	520	0	ENST00000335790.3:c.209A>G	p.Asn70Ser	p.N70S	ENST00000335790	NM_002315.2	70	aAc/aGc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18477985	18477985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			221	57	316	0	ENST00000266497.5:c.1225C>T	p.Leu409Phe	p.L409F	ENST00000266497		409	Ctc/Ttc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420051	49420051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			208	21	508	0	ENST00000301067.7:c.15698G>A	p.Gly5233Asp	p.G5233D	ENST00000301067	NM_003482.3	5233	gGt/gAt																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348866	11348866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			110	27	340	0	ENST00000332029.2:c.470C>T	p.Ala157Val	p.A157V	ENST00000332029	NM_003745.1	157	gCg/gTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2122947	2122947	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			116	45	414	0	ENST00000219476.3:c.2318T>C	p.Leu773Ser	p.L773S	ENST00000219476	NM_000548.3	773	tTa/tCa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944144	81944144	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			112	28	408	0	ENST00000359376.3:c.1753C>A	p.His585Asn	p.H585N	ENST00000359376	NM_002661.3	585	Cac/Aac																																																																															
FANCA	2175	MSKCC	GRCh37	16	89874724	89874724	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			221	58	356	0	ENST00000389301.3:c.574A>G	p.Ser192Gly	p.S192G	ENST00000389301	NM_000135.2	192	Agc/Ggc																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679515	33679515	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs150159511		P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			115	10	330	0	ENST00000308377.4:c.2566C>T	p.Arg856Ter	p.R856*	ENST00000308377	NM_152270.3	856	Cga/Tga																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38793763	38793763	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs387906857		P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			241	16	379	0	ENST00000348513.6:c.218A>G	p.Tyr73Cys	p.Y73C	ENST00000348513	NM_003079.4	73	tAc/tGc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40379572	40379572	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	18	382	0	ENST00000293328.3:c.260T>C	p.Leu87Pro	p.L87P	ENST00000293328	NM_012448.3	87	cTg/cCg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10244366	10244366	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			148	42	371	0	ENST00000340748.4:c.4828G>T	p.Glu1610Ter	p.E1610*	ENST00000340748		1610	Gag/Tag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218818	36218818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			134	28	573	1	ENST00000222270.7:c.4429C>T	p.Arg1477Trp	p.R1477W	ENST00000222270	NM_014727.1	1477	Cgg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5243974	5243974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			84	31	418	0	ENST00000357368.4:c.1508C>T	p.Ala503Val	p.A503V	ENST00000357368	NM_002850.3	503	gCc/gTc																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149238629	149238629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			213	70	400	0	ENST00000360632.3:c.1166C>T	p.Ala389Val	p.A389V	ENST00000360632	NM_015472.4	389	gCt/gTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47059208	47059208	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	43	451	0	ENST00000409792.3:c.7453T>C	p.Cys2485Arg	p.C2485R	ENST00000409792	NM_014159.6	2485	Tgc/Cgc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801537	1801537	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			113	28	422	0	ENST00000260795.2:c.443C>T	p.Thr148Ile	p.T148I	ENST00000260795		148	aCa/aTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187530434	187530434	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			200	59	471	0	ENST00000441802.2:c.10109T>A	p.Ile3370Asn	p.I3370N	ENST00000441802	NM_005245.3	3370	aTc/aAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361153	66361153	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			182	45	436	0	ENST00000273854.3:c.1019A>C	p.Lys340Thr	p.K340T	ENST00000273854	NM_004439.5	340	aAg/aCg																																																																															
APC	324	MSKCC	GRCh37	5	112178232	112178232	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			219	17	498	0	ENST00000257430.4:c.6941A>G	p.Gln2314Arg	p.Q2314R	ENST00000257430	NM_000038.5	2314	cAg/cGg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878674	151878674	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0081383-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			191	49	455	0	ENST00000262189.6:c.6271A>C	p.Asn2091His	p.N2091H	ENST00000262189	NM_170606.2	2091	Aat/Cat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0081675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			235	28	191	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0081675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			202	160	528	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			238	122	307	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974727	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			173	136	450	0	ENST00000304494.5:c.100del	p.Ala34ArgfsTer19	p.A34Rfs*19	ENST00000304494	NM_000077.4	34	Gcg/cg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81562993	81562998	+	missense_variant	Missense_Mutation	ONP	AACAAT	AACAAT	CACAAC			P-0081675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			357	136	364	0	ENST00000298171.2:c.556_561delinsCACAAC	p.Asn186His	p.N186H	ENST00000298171	NM_000369.2	186	AACAAT/CACAAC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0081913-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	245	415	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0081913-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	121	258	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0082246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	143	503	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112174814	112174814	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0082246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	162	621	1	ENST00000257430.4:c.3523C>T	p.Gln1175Ter	p.Q1175*	ENST00000257430	NM_000038.5	1175	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577088	7577097	+	frameshift_variant	Frame_Shift_Del	DEL	TGCGCCGGTC	TGCGCCGGTC	-			P-0082246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	139	541	0	ENST00000269305.4:c.841_850del	p.Asp281GlnfsTer61	p.D281Qfs*61	ENST00000269305	NM_001126112.2	281	GACCGGCGCAca/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0082303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	73	305	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0082303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	45	417	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45856054	45856054	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs922327414		P-0082303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	46	463	0	ENST00000391945.4:c.1852G>A	p.Val618Ile	p.V618I	ENST00000391945	NM_000400.3	618	Gtc/Atc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25497899	25497899	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	26	423	0	ENST00000264709.3:c.550C>A	p.Pro184Thr	p.P184T	ENST00000264709	NM_175629.2	184	Ccc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579840	7579841	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0082303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	28	419	0	ENST00000269305.4:c.72dup	p.Leu25ThrfsTer4	p.L25Tfs*4	ENST00000269305	NM_001126112.2	24	-/A																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591961	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTTTTGTTTGGGTCAACTCTCCAATGTCCACAGGACAGAAGC	CGCTTTTGTTTGGGTCAACTCTCCAATGTCCACAGGACAGAAGC	-			P-0082303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	30	462	0	ENST00000342988.3:c.1082_1125del	p.Arg361HisfsTer2	p.R361Hfs*2	ENST00000342988	NM_005359.5	361	CGCTTTTGTTTGGGTCAACTCTCCAATGTCCACAGGACAGAAGCc/c																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040676	47040676	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0082303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	30	216	0	ENST00000329236.7:c.1077C>A	p.Tyr359Ter	p.Y359*	ENST00000329236	NM_001204466.1	359	taC/taA																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0082306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	207	305	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0082306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	303	432	0	ENST00000346208.3:c.1275dup	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																																																															
CCND2	894	MSKCC	GRCh37	12	4398019	4398019	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	90	333	0	ENST00000261254.3:c.583G>T	p.Ala195Ser	p.A195S	ENST00000261254	NM_001759.3	195	Gcc/Tcc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289623	33289623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			702	73	364	0	ENST00000374542.5:c.80C>T	p.Pro27Leu	p.P27L	ENST00000374542	NM_001141970.1	27	cCa/cTa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399191	139399191	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1243453790		P-0082332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	66	441	0	ENST00000277541.6:c.4952C>T	p.Ser1651Leu	p.S1651L	ENST00000277541	NM_017617.3	1651	tCg/tTg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481845	56481845	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1354914975		P-0082332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	73	474	0	ENST00000267101.3:c.773G>A	p.Arg258His	p.R258H	ENST00000267101	NM_001982.3	258	cGc/cAc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060574	38060574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			774	227	651	0	ENST00000250448.2:c.1415C>T	p.Ser472Phe	p.S472F	ENST00000250448	NM_004496.3	472	tCc/tTc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971315	13971315	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	193	509	0	ENST00000405192.2:c.614G>T	p.Arg205Met	p.R205M	ENST00000405192	NM_001163147.1	205	aGg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0082332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	220	257	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KLF5	688	MSKCC	GRCh37	13	73649905	73649905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	163	395	0	ENST00000377687.4:c.1255G>A	p.Glu419Lys	p.E419K	ENST00000377687	NM_001730.3	419	Gag/Aag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32183090	32183090	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs573820604		P-0082332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	50	483	0	ENST00000375023.3:c.1934A>T	p.Asp645Val	p.D645V	ENST00000375023	NM_004557.3	645	gAc/gTc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4102413	4102413	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	155	430	0	ENST00000262948.5:c.489G>C	p.Lys163Asn	p.K163N	ENST00000262948	NM_030662.3	163	aaG/aaC																																																																															
SETD8	387893	MSKCC	GRCh37	12	123889512	123889512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			35	21	41	0	ENST00000330479.4:c.739G>A	p.Gly247Arg	p.G247R	ENST00000330479	NM_020382.3	247	Ggg/Agg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31435895	31435895	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	129	364	0	ENST00000344624.3:c.3019C>G	p.Gln1007Glu	p.Q1007E	ENST00000344624		1007	Cag/Gag																																																																															
MED12	9968	MSKCC	GRCh37	X	70357634	70357634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	107	611	1	ENST00000374080.3:c.5885C>T	p.Thr1962Ile	p.T1962I	ENST00000374080		1962	aCc/aTc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437176	110437176	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0082332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	59	214	0	ENST00000375856.3:c.1225T>A	p.Cys409Ser	p.C409S	ENST00000375856	NM_003749.2	409	Tgc/Agc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56494996	56494996	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	146	471	0	ENST00000267101.3:c.3353G>T	p.Arg1118Leu	p.R1118L	ENST00000267101	NM_001982.3	1118	cGg/cTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11210234	11210234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	64	403	0	ENST00000361445.4:c.4519G>A	p.Glu1507Lys	p.E1507K	ENST00000361445	NM_004958.3	1507	Gag/Aag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076934	41076934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	195	357	0	ENST00000373198.4:c.1486G>T	p.Gly496Trp	p.G496W	ENST00000373198	NM_133170.3	496	Ggg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0082333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	40	191	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1280295	1280295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	40	291	0	ENST00000310581.5:c.1928G>A	p.Arg643Lys	p.R643K	ENST00000310581	NM_198253.2	643	aGa/aAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249010	+	protein_altering_variant	In_Frame_Ins	INS	G	G	AACAACCCCC			P-0082333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	39	340	0	ENST00000275493.2:c.2308delinsAACAACCCCC	p.Asp770delinsAsnAsnProHis	p.D770delinsNNPH	ENST00000275493	NM_005228.3	770	Gac/AACAACCCCCac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	36	405	0	ENST00000304494.5:c.242C>G	p.Pro81Arg	p.P81R	ENST00000304494	NM_000077.4	81	cCc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577128	7577128	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0082334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	23	393	0	ENST00000269305.4:c.810T>A	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	ttT/ttA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0082334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	29	283	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170013719	170013719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	34	272	0	ENST00000295797.4:c.1438C>A	p.Arg480Ser	p.R480S	ENST00000295797	NM_002740.5	480	Cgc/Agc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115852	8115853	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-	rs1085307641		P-0039228-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			475	576	541	0	ENST00000346208.3:c.1198_1199del	p.Met400ValfsTer106	p.M400Vfs*106	ENST00000346208		400	ATg/g																																																																															
APLNR	187	MSKCC	GRCh37	11	57004043	57004043	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs755793037		P-0039228-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			324	208	555	1	ENST00000257254.3:c.436G>A	p.Gly146Arg	p.G146R	ENST00000257254		146	Ggg/Agg																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025606	1025606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058924-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			721	135	306	0	ENST00000358495.3:c.769C>T	p.Arg257Trp	p.R257W	ENST00000358495	NM_134424.2	257	Cgg/Tgg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69069613	69069613	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058924-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			316	32	293	0	ENST00000288368.4:c.4288C>A	p.Gln1430Lys	p.Q1430K	ENST00000288368	NM_024870.2	1430	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579434	7579715	+	splice_acceptor_variant,splice_donor_variant,frameshift_variant,stop_lost,intron_variant	Splice_Site	DEL	GGGCCGCCGGTGTAGGAGCTGCTGGTGCAGGGGCCACGGGGGGAGCAGCCTCTGGCATTCTGGGAGCTTCATCTGGACCTGGGTCTTCAGTGAACCATTGTTCAATATCGTCCGGGGACAGCATCAAATCATCCATTGCTTGGGACGGCAAGGGGGACTGTAGATGGGTGAAAAGAGCAGTCAGAGGACCAGGTCCTCAGCCCCCCAGCCCCCCAGCCCTCCAGGTCCCCAGCCCTCCAGGTCCCCAGCCCAACCCTTGTCCTTACCAGAACGTTGTTTTCA	GGGCCGCCGGTGTAGGAGCTGCTGGTGCAGGGGCCACGGGGGGAGCAGCCTCTGGCATTCTGGGAGCTTCATCTGGACCTGGGTCTTCAGTGAACCATTGTTCAATATCGTCCGGGGACAGCATCAAATCATCCATTGCTTGGGACGGCAAGGGGGACTGTAGATGGGTGAAAAGAGCAGTCAGAGGACCAGGTCCTCAGCCCCCCAGCCCCCCAGCCCTCCAGGTCCCCAGCCCTCCAGGTCCCCAGCCCAACCCTTGTCCTTACCAGAACGTTGTTTTCA	-			P-0058924-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			875	132	298	0	ENST00000269305.4:c.81_253del		p.X27_splice	ENST00000269305	NM_001126112.2	27	ccTGAAAACAACGTTCTGGTAAGGACAAGGGTTGGGCTGGGGACCTGGAGGGCTGGGGACCTGGAGGGCTGGGGGGCTGGGGGGCTGAGGACCTGGTCCTCTGACTGCTCTTTTCACCCATCTACAGTCCCCCTTGCCGTCCCAAGCAATGGATGATTTGATGCTGTCCCCGGACGATATTGAACAATGGTTCACTGAAGACCCAGGTCCAGATGAAGCTCCCAGAATGCCAGAGGCTGCTCCCCCCGTGGCCCCTGCACCAGCAGCTCCTACACCGGCGGCCCct/ccct																																																																															
E2F3	1871	MSKCC	GRCh37	6	20490543	20490543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058924-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			754	60	311	0	ENST00000346618.3:c.1280C>A	p.Pro427His	p.P427H	ENST00000346618	NM_001949.4	427	cCt/cAt																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30133329	30133329	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0058924-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			826	47	205	0	ENST00000263025.4:c.171-2A>G		p.X57_splice	ENST00000263025	NM_002746.2	57																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31024641	31024641	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058924-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			937	50	270	0	ENST00000375687.4:c.4126G>C	p.Gly1376Arg	p.G1376R	ENST00000375687	NM_015338.5	1376	Ggt/Cgt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100773	8100773	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0058924-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			712	74	267	0	ENST00000346208.3:c.747C>A	p.Cys249Ter	p.C249*	ENST00000346208		249	tgC/tgA																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30648448	30648448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058924-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			592	53	301	0	ENST00000359013.4:c.73C>T	p.Pro25Ser	p.P25S	ENST00000359013	NM_001024847.2	25	Cca/Tca																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603062	48603062	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			223	257	289	0	ENST00000342988.3:c.1363C>T	p.Gln455Ter	p.Q455*	ENST00000342988	NM_005359.5	455	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			225	162	246	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748008	41748028	+	inframe_deletion	In_Frame_Del	DEL	GCCGCCGCCGCCGCTGCCGCG	GCCGCCGCCGCCGCTGCCGCG	-	rs780971967		P-0071823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			168	29	133	0	ENST00000226382.2:c.741_761del	p.Ala254_Ala260del	p.A254_A260del	ENST00000226382	NM_003924.3	247	gcCGCGGCAGCGGCGGCGGCGGCa/gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7572957	7572959	+	frameshift_variant	Frame_Shift_Del	DEL	CAT	CAT	AA			P-0071823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			317	309	383	1	ENST00000269305.4:c.1150_1152delinsTT	p.Met384PhefsTer38	p.M384Ffs*38	ENST00000269305	NM_001126112.2	384	ATG/TT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118360560	118360582	+	frameshift_variant	Frame_Shift_Del	DEL	ACCAAACTACCCCACCAAACCCA	ACCAAACTACCCCACCAAACCCA	CCCAAC			P-0071823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			403	223	361	1	ENST00000534358.1:c.4533_4555delinsCCCAAC	p.Asn1513ThrfsTer16	p.N1513Tfs*16	ENST00000534358	NM_005933.3	1511	ggACCAAACTACCCCACCAAACCCAca/ggCCCAACca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578546	7578547	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0077388-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			286	110	508	0	ENST00000269305.4:c.383dup	p.Ala129CysfsTer20	p.A129Cfs*20	ENST00000269305	NM_001126112.2	128	cct/ccCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077388-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			274	53	294	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326887	62326887	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs200225613		P-0077388-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			377	89	543	0	ENST00000482936.1:c.3706G>A	p.Gly1236Arg	p.G1236R	ENST00000482936		1236	Ggg/Agg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971195	21971196	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAT			P-0077388-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			432	87	509	0	ENST00000304494.5:c.160_162dup	p.Met54dup	p.M54dup	ENST00000304494	NM_000077.4	54	-/ATG																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22005991	22005991	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077388-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			433	110	514	0	ENST00000276925.6:c.412G>C	p.Asp138His	p.D138H	ENST00000276925	NM_004936.3	138	Gac/Cac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535375	66535375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077388-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			339	61	423	0	ENST00000273854.3:c.86C>A	p.Ala29Asp	p.A29D	ENST00000273854	NM_004439.5	29	gCc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428594	49428594	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0077388-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			415	94	492	0	ENST00000301067.7:c.10355+1del		p.X3452_splice	ENST00000301067	NM_003482.3	3452																																																																																
FAT1	2195	MSKCC	GRCh37	4	187542245	187542245	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077388-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			430	215	518	0	ENST00000441802.2:c.5495T>C	p.Val1832Ala	p.V1832A	ENST00000441802	NM_005245.3	1832	gTa/gCa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56873513	56873513	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077388-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			328	71	394	0	ENST00000308159.5:c.2217T>A	p.Asp739Glu	p.D739E	ENST00000308159	NM_014669.4	739	gaT/gaA																																																																															
APC	324	MSKCC	GRCh37	5	112175876	112175876	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079355-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			172	559	603	0	ENST00000257430.4:c.4585C>T	p.Gln1529Ter	p.Q1529*	ENST00000257430	NM_000038.5	1529	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152007146	152007146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079355-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			416	257	504	0	ENST00000262189.6:c.754C>T	p.His252Tyr	p.H252Y	ENST00000262189	NM_170606.2	252	Cat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0079639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	36	77	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178948136	178948136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	23	49	0	ENST00000263967.3:c.2908G>A	p.Glu970Lys	p.E970K	ENST00000263967	NM_006218.2	970	Gaa/Aaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974715	21974732	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCCCCCGCCTCCA	GCAGCGCCCCCGCCTCCA	-			P-0079639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	22	63	0	ENST00000304494.5:c.95_112del	p.Leu32_Leu37del	p.L32_L37del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCcc/ccc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117678001	117678001	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62430836		P-0079639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	28	50	0	ENST00000368508.3:c.3932G>A	p.Arg1311Gln	p.R1311Q	ENST00000368508	NM_002944.2	1311	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0079639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	16	29	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573583	48573584	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0079639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	30	70	0	ENST00000342988.3:c.170dup	p.Leu57PhefsTer13	p.L57Ffs*13	ENST00000342988	NM_005359.5	56	tct/tcTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0080966-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			151	18	374	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080966-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			162	17	270	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0081061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	48	531	1	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022535	12022535	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs724159947		P-0081061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			750	52	754	0	ENST00000396373.4:c.641C>T	p.Pro214Leu	p.P214L	ENST00000396373	NM_001987.4	214	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	21	308	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670658	134670658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771145808		P-0081061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	52	516	0	ENST00000398015.3:c.569G>A	p.Arg190His	p.R190H	ENST00000398015	NM_004441.4	190	cGt/cAt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467668	50467668	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	51	510	0	ENST00000331340.3:c.903G>T	p.Lys301Asn	p.K301N	ENST00000331340	NM_006060.4	301	aaG/aaT																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300136	137300136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	40	558	0	ENST00000481739.1:c.421C>T	p.Arg141Cys	p.R141C	ENST00000481739	NM_002957.4	141	Cgc/Tgc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970898	21970900	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CAC	CAC	-			P-0081061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	45	514	0	ENST00000304494.5:c.457+1_457+3del		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																																
IFNGR1	3459	MSKCC	GRCh37	6	137519256	137519256	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	27	515	0	ENST00000367739.4:c.1382A>G	p.His461Arg	p.H461R	ENST00000367739	NM_000416.2	461	cAt/cGt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21619878	21619894	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTGCAGAGGTGCCCG	AGCTGCAGAGGTGCCCG	-			P-0081228-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	131	303	0	ENST00000382592.4:c.272_288del	p.Ser91CysfsTer51	p.S91Cfs*51	ENST00000382592	NM_014572.2	91	tCGGGCACCTCTGCAGCT/t																																																																															
APC	324	MSKCC	GRCh37	5	112176808	112176809	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0081228-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	28	333	0	ENST00000257430.4:c.5519_5520del	p.Phe1840Ter	p.F1840*	ENST00000257430	NM_000038.5	1839	gcTTtt/gctt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0081712-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			379	190	450	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772695	135772695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081712-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			517	143	387	0	ENST00000298552.3:c.2851C>T	p.Gln951Ter	p.Q951*	ENST00000298552	NM_001162426.1	951	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081712-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			288	94	267	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081712-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			616	128	376	0	ENST00000289153.2:c.1811G>A	p.Arg604Gln	p.R604Q	ENST00000289153	NM_006219.2	604	cGg/cAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971049	21971049	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081712-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			340	154	445	1	ENST00000304494.5:c.309del	p.Leu104TrpfsTer42	p.L104Wfs*42	ENST00000304494	NM_000077.4	103	cgG/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578247	7578247	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0082079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	172	557	0	ENST00000269305.4:c.602T>A	p.Leu201Ter	p.L201*	ENST00000269305	NM_001126112.2	201	tTg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0082085-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			27	292	336	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66522024	66522024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082085-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	270	309	0	ENST00000358598.2:c.679G>A	p.Asp227Asn	p.D227N	ENST00000358598	NM_212471.2	227	Gac/Aac																																																																															
RB1	5925	MSKCC	GRCh37	13	49033823	49033823	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0082085-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			38	200	361	0	ENST00000267163.4:c.1961-1G>A		p.X654_splice	ENST00000267163	NM_000321.2	654																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0082085-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	197	266	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	213	527	0	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	253	562	2	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
POLE	5426	MSKCC	GRCh37	12	133245024	133245024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs752846614		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	260	578	5	ENST00000320574.5:c.2091del	p.Leu698CysfsTer94	p.L698Cfs*94	ENST00000320574	NM_006231.2	697	ccC/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424086	49424086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1218766571		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	200	373	0	ENST00000301067.7:c.13976G>A	p.Arg4659Gln	p.R4659Q	ENST00000301067	NM_003482.3	4659	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426771	49426772	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs944680171		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	261	682	0	ENST00000301067.7:c.11714_11716dup	p.Gln3905dup	p.Q3905dup	ENST00000301067	NM_003482.3	3905	ctg/cAGCtg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549230	21549230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113238499		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	285	650	0	ENST00000382592.4:c.3046G>A	p.Glu1016Lys	p.E1016K	ENST00000382592	NM_014572.2	1016	Gaa/Aaa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563416	21563416	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1163593629		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	281	563	0	ENST00000382592.4:c.503C>T	p.Thr168Met	p.T168M	ENST00000382592	NM_014572.2	168	aCg/aTg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133898	41133898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	243	541	0	ENST00000379561.5:c.1730del	p.Gly577AlafsTer5	p.G577Afs*5	ENST00000379561	NM_002015.3	577	gGc/gc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060928	38060928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	93	523	0	ENST00000250448.2:c.1061C>A	p.Ser354Tyr	p.S354Y	ENST00000250448	NM_004496.3	354	tCc/tAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42021441	42021442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	252	466	0	ENST00000219905.7:c.3744dup	p.Glu1249ArgfsTer25	p.E1249Rfs*25	ENST00000219905	NM_001164273.1	1246	cga/cgAa																																																																															
CD276	80381	MSKCC	GRCh37	15	73994790	73994790	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs562558740		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	194	548	0	ENST00000318443.5:c.274C>T	p.Arg92Cys	p.R92C	ENST00000318443	NM_001024736.1	92	Cgc/Tgc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500476	99500476	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	266	609	0	ENST00000268035.6:c.3913del	p.Leu1305TrpfsTer45	p.L1305Wfs*45	ENST00000268035	NM_000875.3	1303	gtC/gt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2133726	2133726	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45517320		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	228	586	0	ENST00000219476.3:c.3914C>T	p.Pro1305Leu	p.P1305L	ENST00000219476	NM_000548.3	1305	cCg/cTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647489	3647489	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756369289		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	236	530	0	ENST00000294008.3:c.1574G>A	p.Arg525His	p.R525H	ENST00000294008	NM_032444.2	525	cGc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779851	3779851	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	219	466	0	ENST00000262367.5:c.5197T>C	p.Tyr1733His	p.Y1733H	ENST00000262367	NM_004380.2	1733	Tat/Cat																																																																															
NUP93	9688	MSKCC	GRCh37	16	56852600	56852600	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	93	396	0	ENST00000308159.5:c.518del	p.Pro173LeufsTer25	p.P173Lfs*25	ENST00000308159	NM_014669.4	172	Ccc/cc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	327	650	0	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821572	72821572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	112	506	0	ENST00000268489.5:c.10603G>A	p.Glu3535Lys	p.E3535K	ENST00000268489	NM_006885.3	3535	Gag/Aag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	238	592	1	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942125	81942125	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	187	491	1	ENST00000359376.3:c.1667del	p.Gly556AlafsTer42	p.G556Afs*42	ENST00000359376	NM_002661.3	554	acG/ac																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347878	89347878	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763039848		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	38	503	0	ENST00000301030.4:c.5072C>T	p.Ala1691Val	p.A1691V	ENST00000301030	NM_001256183.1	1691	gCg/gTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89882992	89882992	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	42	431	0	ENST00000389301.3:c.32C>G	p.Ser11Trp	p.S11W	ENST00000389301	NM_000135.2	11	tCg/tGg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	89	538	0	ENST00000293328.3:c.1101_1102dup	p.Gln368ProfsTer3	p.Q368Pfs*3	ENST00000293328	NM_012448.3	368	cag/cCCag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	578	716	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	63	444	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519999		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	16	448	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272237	15272238	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	44	577	1	ENST00000263388.2:c.6201dup	p.Gly2068ArgfsTer27	p.G2068Rfs*27	ENST00000263388	NM_000435.2	2067	-/C																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354008	15354008	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	59	176	0	ENST00000263377.2:c.2872del	p.Leu958CysfsTer110	p.L958Cfs*110	ENST00000263377	NM_058243.2	958	Ctg/tg																																																																															
AKT2	208	MSKCC	GRCh37	19	40748487	40748487	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143335817		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	214	481	0	ENST00000392038.2:c.395C>T	p.Thr132Met	p.T132M	ENST00000392038	NM_001626.4	132	aCg/aTg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45856059	45856059	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376556895		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	228	548	0	ENST00000391945.4:c.1847G>A	p.Arg616Gln	p.R616Q	ENST00000391945	NM_000400.3	616	cGg/cAg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50921136	50921136	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs963136799		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	31	353	0	ENST00000440232.2:c.3256C>T	p.Arg1086Trp	p.R1086W	ENST00000440232	NM_002691.3	1086	Cgg/Tgg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198281602	198281602	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	61	399	0	ENST00000335508.6:c.529A>G	p.Lys177Glu	p.K177E	ENST00000335508	NM_012433.2	177	Aaa/Gaa																																																																															
CASP8	841	MSKCC	GRCh37	2	202151289	202151290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	171	364	0	ENST00000358485.4:c.1596dup	p.Leu533ThrfsTer6	p.L533Tfs*6	ENST00000358485	NM_001080125.1	530	aga/agAa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	265	529	15	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																															
MSH6	2956	MSKCC	GRCh37	2	48032130	48032130	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	203	403	0	ENST00000234420.5:c.3520T>C	p.Phe1174Leu	p.F1174L	ENST00000234420	NM_000179.2	1174	Ttt/Ctt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	160	586	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31025035	31025035	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375101983		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	291	447	1	ENST00000375687.4:c.4520C>T	p.Ala1507Val	p.A1507V	ENST00000375687	NM_015338.5	1507	gCg/gTg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155367	185155367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs902931460		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	43	516	0	ENST00000265026.3:c.608C>T	p.Thr203Met	p.T203M	ENST00000265026	NM_004721.4	203	aCg/aTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	301	485	0	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275225	41275225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	310	522	0	ENST00000349496.5:c.1391C>T	p.Ala464Val	p.A464V	ENST00000349496	NM_001904.3	464	gCc/gTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534326	187534326	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777328292		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	253	500	0	ENST00000441802.2:c.9400G>A	p.Val3134Met	p.V3134M	ENST00000441802	NM_005245.3	3134	Gtg/Atg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541130	187541130	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750302176		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	302	564	0	ENST00000441802.2:c.6610G>A	p.Val2204Met	p.V2204M	ENST00000441802	NM_005245.3	2204	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112179233	112179233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	63	486	0	ENST00000257430.4:c.7942G>A	p.Ala2648Thr	p.A2648T	ENST00000257430	NM_000038.5	2648	Gca/Aca																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867540	35867541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1250237683		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	92	410	0	ENST00000303115.3:c.361dup	p.Ile121AsnfsTer8	p.I121Nfs*8	ENST00000303115	NM_002185.3	118	-/A																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753011	57753012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	294	550	6	ENST00000274289.3:c.1004dup	p.Leu335PhefsTer12	p.L335Ffs*12	ENST00000274289	NM_006622.3	335	ttg/ttTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	197	389	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005117	150005117	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56348064		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	328	682	0	ENST00000253339.5:c.1108C>T	p.Arg370Trp	p.R370W	ENST00000253339		370	Cgg/Tgg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129329	152129329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	182	529	0	ENST00000206249.3:c.287del	p.Gly96ValfsTer13	p.G96Vfs*13	ENST00000206249	NM_000125.3	94	ctG/ct																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522188	157522188	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370838091		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	243	620	0	ENST00000346085.5:c.4460C>T	p.Ala1487Val	p.A1487V	ENST00000346085	NM_020732.3	1487	gCg/gTg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911302	29911302	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	50	445	1	ENST00000376809.5:c.601G>T	p.Glu201Ter	p.E201*	ENST00000376809	NM_002116.7	201	Gag/Tag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188294	32188295	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs766348245		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	266	604	1	ENST00000375023.3:c.1046dup	p.Thr350HisfsTer4	p.T350Hfs*4	ENST00000375023	NM_004557.3	349	ggc/ggGc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946081	13946081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	203	388	0	ENST00000405192.2:c.1015G>A	p.Glu339Lys	p.E339K	ENST00000405192	NM_001163147.1	339	Gaa/Aaa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	135	422	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739626	41739626	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	54	325	0	ENST00000242208.4:c.347T>G	p.Leu116Arg	p.L116R	ENST00000242208	NM_002192.2	116	cTt/cGt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467780	50467780	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760454379		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	194	482	1	ENST00000331340.3:c.1015G>A	p.Glu339Lys	p.E339K	ENST00000331340	NM_006060.4	339	Gag/Aag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992720	68992721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs774202059		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	105	387	3	ENST00000288368.4:c.1693dup	p.Ser565PhefsTer3	p.S565Ffs*3	ENST00000288368	NM_024870.2	562	cgt/cgTt																																																																															
PAX5	5079	MSKCC	GRCh37	9	37034025	37034025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	37	255	0	ENST00000358127.4:c.4G>A	p.Asp2Asn	p.D2N	ENST00000358127	NM_001280556.1	2	Gat/Aat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376642	8376642	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369684559		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	182	369	0	ENST00000356435.5:c.4471G>A	p.Ala1491Thr	p.A1491T	ENST00000356435		1491	Gcc/Acc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8517938	8517938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	49	464	0	ENST00000356435.5:c.1453C>A	p.Gln485Lys	p.Q485K	ENST00000356435		485	Cag/Aag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922927	39922927	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	84	491	0	ENST00000378444.4:c.3781del	p.Arg1261GlyfsTer33	p.R1261Gfs*33	ENST00000378444	NM_001123385.1	1261	Agg/gg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411446	63411446	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778025		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	250	617	0	ENST00000330258.3:c.1721G>A	p.Arg574Gln	p.R574Q	ENST00000330258	NM_152424.3	574	cGg/cAg																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874158	155874158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	239	585	0	ENST00000368323.3:c.373G>A	p.Asp125Asn	p.D125N	ENST00000368323	NM_006912.5	125	Gac/Aac																																																																															
GNB1	2782	MSKCC	GRCh37	1	1721965	1721965	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	92	441	0	ENST00000378609.4:c.568C>A	p.Leu190Ile	p.L190I	ENST00000378609	NM_002074.3	190	Ctt/Att																																																																															
WT1	7490	MSKCC	GRCh37	11	32449564	32449564	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs200222400		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	158	450	0	ENST00000332351.3:c.810C>G	p.Cys270Trp	p.C270W	ENST00000332351	NM_024426.4	270	tgC/tgG																																																																															
RAB35	11021	MSKCC	GRCh37	12	120536885	120536885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	39	492	0	ENST00000229340.5:c.301C>T	p.Arg101Trp	p.R101W	ENST00000229340	NM_006861.6	101	Cgg/Tgg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18491477	18491477	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	17	373	0	ENST00000266497.5:c.1390G>T	p.Gly464Ter	p.G464*	ENST00000266497		464	Gga/Tga																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18573903	18573903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	83	376	0	ENST00000266497.5:c.2221G>A	p.Ala741Thr	p.A741T	ENST00000266497		741	Gca/Aca																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944982	31944982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	253	552	0	ENST00000340398.3:c.119G>A	p.Arg40His	p.R40H	ENST00000340398	NM_001013699.2	40	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445083	49445083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	269	626	0	ENST00000301067.7:c.2383C>T	p.Pro795Ser	p.P795S	ENST00000301067	NM_003482.3	795	Cca/Tca																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861839	57861839	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	107	608	0	ENST00000228682.2:c.1143del	p.Lys381AsnfsTer13	p.K381Nfs*13	ENST00000228682	NM_005269.2	380	cgA/cg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435816	110435816	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	94	556	0	ENST00000375856.3:c.2585C>A	p.Pro862His	p.P862H	ENST00000375856	NM_003749.2	862	cCt/cAt																																																																															
MGA	23269	MSKCC	GRCh37	15	41961517	41961517	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	114	524	0	ENST00000219905.7:c.425G>A	p.Trp142Ter	p.W142*	ENST00000219905	NM_001164273.1	142	tGg/tAg																																																																															
MGA	23269	MSKCC	GRCh37	15	42057198	42057198	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	77	431	0	ENST00000219905.7:c.7859C>G	p.Ser2620Cys	p.S2620C	ENST00000219905	NM_001164273.1	2620	tCt/tGt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654685	67654685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	54	407	0	ENST00000264010.4:c.1172C>T	p.Thr391Ile	p.T391I	ENST00000264010	NM_006565.3	391	aCa/aTa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830270	72830270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144816752		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	225	580	0	ENST00000268489.5:c.6311C>T	p.Thr2104Met	p.T2104M	ENST00000268489	NM_006885.3	2104	aCg/aTg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40441961	40441963	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	223	466	0	ENST00000345506.4:c.211_213del	p.Lys71del	p.K71del	ENST00000345506	NM_003152.3	69	cAGAag/cag																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216595	7216595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	308	624	0	ENST00000380728.2:c.740G>A	p.Gly247Asp	p.G247D	ENST00000380728		247	gGt/gAt																																																																															
YES1	7525	MSKCC	GRCh37	18	743371	743371	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	199	409	0	ENST00000314574.4:c.769A>T	p.Thr257Ser	p.T257S	ENST00000314574	NM_005433.3	257	Act/Tct																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299922	15299922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	283	656	0	ENST00000263388.2:c.1256G>A	p.Cys419Tyr	p.C419Y	ENST00000263388	NM_000435.2	419	tGc/tAc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753885	42753885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			758	103	639	0	ENST00000222329.4:c.379G>A	p.Ala127Thr	p.A127T	ENST00000222329	NM_006494.2	127	Gca/Aca																																																																															
INSR	3643	MSKCC	GRCh37	19	7150539	7150539	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	45	347	0	ENST00000302850.5:c.2236A>C	p.Thr746Pro	p.T746P	ENST00000302850	NM_000208.2	746	Acc/Ccc																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630697	67630697	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs189478486		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	162	471	0	ENST00000272342.5:c.883G>A	p.Gly295Arg	p.G295R	ENST00000272342	NM_019002.3	295	Gga/Aga																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919643	96919643	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751044006		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	230	528	0	ENST00000258439.3:c.620C>T	p.Ala207Val	p.A207V	ENST00000258439	NM_001193304.2	207	gCg/gTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017815	31017815	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	30	414	0	ENST00000375687.4:c.677A>G	p.Asp226Gly	p.D226G	ENST00000375687	NM_015338.5	226	gAc/gGc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57466818	57466818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	88	172	0	ENST00000371085.3:c.37C>T	p.Arg13Cys	p.R13C	ENST00000371085	NM_000516.4	13	Cgc/Tgc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445968	29445968	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755739062		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	207	516	0	ENST00000544604.2:c.1799G>A	p.Arg600His	p.R600H	ENST00000544604	NM_001206998.1	600	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917495	178917495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	102	338	0	ENST00000263967.3:c.370C>T	p.Pro124Ser	p.P124S	ENST00000263967	NM_006218.2	124	Cca/Tca																																																																															
MST1	4485	MSKCC	GRCh37	3	49724693	49724693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	131	358	0	ENST00000449682.2:c.496C>A	p.Leu166Met	p.L166M	ENST00000449682	NM_020998.3	166	Ctg/Atg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391072	89391072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	227	505	0	ENST00000336596.2:c.1138G>A	p.Val380Ile	p.V380I	ENST00000336596	NM_005233.5	380	Gtc/Atc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245494	153245494	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	221	457	0	ENST00000281708.4:c.1697G>A	p.Trp566Ter	p.W566*	ENST00000281708	NM_033632.3	566	tGg/tAg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117724344	117724344	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	218	459	0	ENST00000368508.3:c.535T>C	p.Tyr179His	p.Y179H	ENST00000368508	NM_002944.2	179	Tac/Cac																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200245	138200245	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			806	66	630	0	ENST00000237289.4:c.1663C>A	p.Leu555Ile	p.L555I	ENST00000237289	NM_001270507.1	555	Ctc/Atc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004778	150004778	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147658805		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	45	593	0	ENST00000253339.5:c.1447G>A	p.Ala483Thr	p.A483T	ENST00000253339		483	Gct/Act																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911277	29911277	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	26	315	0	ENST00000376809.5:c.577del	p.Arg193AlafsTer21	p.R193Afs*21	ENST00000376809	NM_002116.7	192	ctC/ct																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323249	31323249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	89	370	0	ENST00000412585.2:c.740A>G	p.Asp247Gly	p.D247G	ENST00000412585	NM_005514.6	247	gAc/gGc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32820953	32820953	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	276	589	0	ENST00000354258.4:c.641G>A	p.Trp214Ter	p.W214*	ENST00000354258	NM_000593.5	214	tGg/tAg																																																																															
MET	4233	MSKCC	GRCh37	7	116340321	116340321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	194	395	0	ENST00000397752.3:c.1183G>A	p.Glu395Lys	p.E395K	ENST00000397752	NM_000245.2	395	Gag/Aag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410001	139410001	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763988265		P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	274	616	0	ENST00000277541.6:c.1837C>T	p.Arg613Cys	p.R613C	ENST00000277541	NM_017617.3	613	Cgc/Tgc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2060987	2060987	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	256	497	0	ENST00000349721.2:c.1692+1G>A		p.X564_splice	ENST00000349721	NM_003070.3	564																																																																																
CDKN2B-AS1	100048912	MSKCC	GRCh37	9	21994303	21994303	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	74	406	0				ENST00000428597																																																																																		
STAG2	10735	MSKCC	GRCh37	X	123195109	123195109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	137	381	0	ENST00000218089.9:c.1452G>A	p.Met484Ile	p.M484I	ENST00000218089	NM_001042749.1	484	atG/atA																																																																															
STAG2	10735	MSKCC	GRCh37	X	123205036	123205036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	104	354	0	ENST00000218089.9:c.2396G>A	p.Ser799Asn	p.S799N	ENST00000218089	NM_001042749.1	799	aGc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0082095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			41	591	648	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912580		P-0082095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			51	381	430	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916864	178916864	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	192	482	0	ENST00000263967.3:c.251A>G	p.Asp84Gly	p.D84G	ENST00000263967	NM_006218.2	84	gAt/gGt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266031	41266617	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	TTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAAC	TTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAAC	-			P-0082095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	338	473	0	ENST00000349496.5:c.31_417del		p.X11_splice	ENST00000349496	NM_001904.3	11	TTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAAC/-																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187769	11187769	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	148	501	0	ENST00000361445.4:c.6128A>G	p.Asn2043Ser	p.N2043S	ENST00000361445	NM_004958.3	2043	aAc/aGc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5072588	5072594	+	frameshift_variant	Frame_Shift_Del	DEL	TTAAAAG	TTAAAAG	-			P-0082095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	376	471	0	ENST00000381652.3:c.1740_1746del	p.Leu580PhefsTer19	p.L580Ffs*19	ENST00000381652	NM_004972.3	580	TTAAAAGtt/tt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038723	47038723	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0082151-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	57	361	0	ENST00000329236.7:c.499G>T	p.Glu167Ter	p.E167*	ENST00000329236	NM_001204466.1	167	Gag/Tag																																																																															
MET	4233	MSKCC	GRCh37	7	116411884	116411898	+	splice_region_variant,intron_variant	Splice_Region	DEL	TCTTTCTCTCTGTTT	TCTTTCTCTCTGTTT	C			P-0082151-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	65	458	0	ENST00000397752.3:c.2888-19_2888-5delinsC		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082315-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	95	252	0	ENST00000347630.2:c.397T>C	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	Ttc/Ctc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0082317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			63	57	222	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	249	412	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0082317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	140	310	0	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1207146	1207146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	224	416	0	ENST00000326873.7:c.234G>T	p.Lys78Asn	p.K78N	ENST00000326873	NM_000455.4	78	aaG/aaT																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028651	12028651	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0082317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	83	352	0	ENST00000353533.5:c.854A>T	p.Asp285Val	p.D285V	ENST00000353533	NM_003010.3	285	gAt/gTt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932303	39932303	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1025284999		P-0082317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	128	407	0	ENST00000378444.4:c.2296G>A	p.Glu766Lys	p.E766K	ENST00000378444	NM_001123385.1	766	Gag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061228	38061228	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	116	374	0	ENST00000250448.2:c.761T>C	p.Phe254Ser	p.F254S	ENST00000250448	NM_004496.3	254	tTc/tCc																																																																															
ATR	545	MSKCC	GRCh37	3	142177901	142177901	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	112	332	1	ENST00000350721.4:c.7402G>C	p.Gly2468Arg	p.G2468R	ENST00000350721	NM_001184.3	2468	Ggt/Cgt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396511	30396511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	78	355	0	ENST00000331968.5:c.208G>A	p.Gly70Arg	p.G70R	ENST00000331968	NM_002742.2	70	Ggg/Agg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221766	36221766	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0082317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	185	397	0	ENST00000222270.7:c.5435C>A	p.Ser1812Ter	p.S1812*	ENST00000222270	NM_014727.1	1812	tCa/tAa																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42840421	42840421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	180	371	0	ENST00000398585.3:c.1327G>A	p.Glu443Lys	p.E443K	ENST00000398585	NM_001135099.1	443	Gag/Aag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984835	11984836	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0082317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	125	332	0	ENST00000353533.5:c.381_382del	p.Met128GlyfsTer3	p.M128Gfs*3	ENST00000353533	NM_003010.3	127	atAAtg/attg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188600	11188600	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0082317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	140	331	0	ENST00000361445.4:c.5821C>T	p.Gln1941Ter	p.Q1941*	ENST00000361445	NM_004958.3	1941	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579357	7579358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGAAAC	rs1131691004		P-0082318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	35	371	0	ENST00000269305.4:c.323_329dup	p.Leu111PhefsTer40	p.L111Ffs*40	ENST00000269305	NM_001126112.2	110	cgt/cgGTTTCCGt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188866	32188866	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767567419		P-0082318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	28	424	0	ENST00000375023.3:c.688C>T	p.Arg230Cys	p.R230C	ENST00000375023	NM_004557.3	230	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0082319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	106	294	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023775	27023775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	56	303	0	ENST00000324856.7:c.881C>T	p.Thr294Ile	p.T294I	ENST00000324856	NM_006015.4	294	aCc/aTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602926	10602926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	70	284	0	ENST00000171111.5:c.652G>A	p.Glu218Lys	p.E218K	ENST00000171111	NM_203500.1	218	Gag/Aag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286219	66286219	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0082319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	10	251	0	ENST00000273854.3:c.1467G>A	p.Trp489Ter	p.W489*	ENST00000273854	NM_004439.5	489	tgG/tgA																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118912	70118912	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			718	129	385	0	ENST00000245479.2:c.484C>A	p.Arg162Ser	p.R162S	ENST00000245479	NM_000346.3	162	Cgc/Agc																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778251	27778251	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			804	51	335	0	ENST00000369163.2:c.400G>C	p.Glu134Gln	p.E134Q	ENST00000369163	NM_003536.2	134	Gag/Cag																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46609146	46609146	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	44	308	0	ENST00000263734.3:c.2205G>C	p.Leu735Phe	p.L735F	ENST00000263734	NM_001430.4	735	ttG/ttC																																																																															
PARK2	5071	MSKCC	GRCh37	6	161771140	161771140	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	36	239	0	ENST00000366898.1:c.1389C>A	p.Phe463Leu	p.F463L	ENST00000366898	NM_004562.2	463	ttC/ttA																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741387	17741387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	56	320	0	ENST00000250003.3:c.58C>A	p.Leu20Ile	p.L20I	ENST00000250003	NM_002478.4	20	Ctc/Atc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40371843	40371843	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	74	295	0	ENST00000293328.3:c.568G>T	p.Ala190Ser	p.A190S	ENST00000293328	NM_012448.3	190	Gcc/Tcc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141077	55141077	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	44	303	0	ENST00000257290.5:c.1723G>T	p.Val575Leu	p.V575L	ENST00000257290	NM_006206.4	575	Gtg/Ttg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012389	29012389	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	22	293	0	ENST00000282397.4:c.482C>G	p.Thr161Arg	p.T161R	ENST00000282397	NM_002019.4	161	aCg/aGg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62322268	62322268	+	stop_gained,NMD_transcript_variant	Nonsense_Mutation	SNP	G	G	T			P-0082319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	43	285	0	ENST00000482936.1:c.2524G>T	p.Glu842Ter	p.E842*	ENST00000482936		842	Gaa/Taa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243872	46243876	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAA	GCCAA	-			P-0082319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	48	290	0	ENST00000334344.6:c.1966_1970del	p.Ala656ProfsTer49	p.A656Pfs*49	ENST00000334344	NM_152641.2	656	GCCAAc/c																																																																															
CDH1	999	MSKCC	GRCh37	16	68847321	68847321	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	53	287	0	ENST00000261769.5:c.1243A>G	p.Ile415Val	p.I415V	ENST00000261769	NM_004360.3	415	Ata/Gta																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332571	153332571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	30	319	0	ENST00000281708.4:c.385G>T	p.Asp129Tyr	p.D129Y	ENST00000281708	NM_033632.3	129	Gat/Tat																																																																															
HGF	3082	MSKCC	GRCh37	7	81350106	81350106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	13	185	0	ENST00000222390.5:c.1226G>A	p.Gly409Glu	p.G409E	ENST00000222390	NM_000601.4	409	gGa/gAa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061531	38061531	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	39	317	0	ENST00000250448.2:c.458C>A	p.Ala153Glu	p.A153E	ENST00000250448	NM_004496.3	153	gCg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0082320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	76	168	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0082320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	87	202	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68844109	68844110	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0082320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	80	329	0	ENST00000261769.5:c.698dup	p.His233GlnfsTer11	p.H233Qfs*11	ENST00000261769	NM_004360.3	233	cac/cAac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178943780	178943780	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0082320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	99	234	0	ENST00000263967.3:c.2447T>G	p.Ile816Ser	p.I816S	ENST00000263967	NM_006218.2	816	aTt/aGt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12044537	12044537	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0082320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	78	304	1	ENST00000353533.5:c.1162del	p.Met388CysfsTer25	p.M388Cfs*25	ENST00000353533	NM_003010.3	387	cAa/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0080742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	49	620	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	29	480	1	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729610	41729610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	199	560	0	ENST00000242208.4:c.919C>T	p.Arg307Trp	p.R307W	ENST00000242208	NM_002192.2	307	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080778-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			200	22	245	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KLF5	688	MSKCC	GRCh37	13	73638018	73638019	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0080778-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			247	62	290	0	ENST00000377687.4:c.1193_1194dup	p.Gly399LeufsTer23	p.G399Lfs*23	ENST00000377687	NM_001730.3	398	act/aCTct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0080778-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			393	49	423	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591928	48591928	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs377767350		P-0080778-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			331	22	410	0	ENST00000342988.3:c.1091T>G	p.Leu364Trp	p.L364W	ENST00000342988	NM_005359.5	364	tTg/tGg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46596965	46596965	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0080778-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			255	47	271	0	ENST00000263734.3:c.780-1G>A		p.X260_splice	ENST00000263734	NM_001430.4	260																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41101086	41101086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776769442		P-0080778-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			296	42	484	0	ENST00000373198.4:c.1270G>A	p.Val424Met	p.V424M	ENST00000373198	NM_133170.3	424	Gtg/Atg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033198	69033198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080778-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			204	24	349	0	ENST00000288368.4:c.3638G>A	p.Arg1213Lys	p.R1213K	ENST00000288368	NM_024870.2	1213	aGg/aAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	22	237	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0081623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	238	437	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574016	7574017	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGCTC			P-0081623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	185	379	0	ENST00000269305.4:c.1006_1010dup	p.Phe338SerfsTer9	p.F338Sfs*9	ENST00000269305	NM_001126112.2	337	cgc/cgGAGCGc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5029876	5029876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	65	339	0	ENST00000381652.3:c.320C>T	p.Ser107Leu	p.S107L	ENST00000381652	NM_004972.3	107	tCa/tTa																																																																															
RB1	5925	MSKCC	GRCh37	13	49027227	49027229	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	TAA	TAA	GAATTAATATCTGC			P-0081623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	39	328	0	ENST00000267163.4:c.1794_1796delinsGAATTAATATCTGC	p.Asn598LysfsTer3	p.N598Kfs*3	ENST00000267163	NM_000321.2	598	aaTAAt/aaGAATTAATATCTGCt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44820550	44820551	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0081852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	43	186	0	ENST00000377967.4:c.248dup	p.Ile84AsnfsTer5	p.I84Nfs*5	ENST00000377967	NM_021140.2	83	cta/cTta																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15967462	15967463	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0081852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	60	416	0	ENST00000268712.3:c.5140_5141del	p.Arg1714GlyfsTer129	p.R1714Gfs*129	ENST00000268712	NM_006311.3	1714	AGg/g																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871181	12871181	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	66	346	0	ENST00000228872.4:c.408del	p.Pro137ArgfsTer8	p.P137Rfs*8	ENST00000228872	NM_004064.3	136	gaT/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0082177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	248	361	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CASP8	841	MSKCC	GRCh37	2	202137620	202137620	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0082177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	18	401	0	ENST00000358485.4:c.728-1G>C		p.X243_splice	ENST00000358485	NM_001080125.1	243																																																																																
FYN	2534	MSKCC	GRCh37	6	112025268	112025268	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0082177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	147	333	0	ENST00000368678.4:c.481C>T	p.Arg161Ter	p.R161*	ENST00000368678		161	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151902229	151902229	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0082177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	17	178	0	ENST00000262189.6:c.3923C>G	p.Ser1308Ter	p.S1308*	ENST00000262189	NM_170606.2	1308	tCa/tGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922319	178922319	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	33	210	0	ENST00000263967.3:c.1088G>C	p.Gly363Ala	p.G363A	ENST00000263967	NM_006218.2	363	gGa/gCa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256276	16256276	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0082177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	376	487	0	ENST00000375759.3:c.3541C>T	p.Gln1181Ter	p.Q1181*	ENST00000375759	NM_015001.2	1181	Cag/Tag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032558	12032558	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0082177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	59	264	0	ENST00000353533.5:c.994G>T	p.Glu332Ter	p.E332*	ENST00000353533	NM_003010.3	332	Gag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117360	115117361	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTATGTCCGAAAT			P-0082177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	170	363	0	ENST00000257566.3:c.801_813dup	p.Leu272IlefsTer10	p.L272Ifs*10	ENST00000257566	NM_016569.3	271	-/ATTTCGGACATAC																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0082190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	174	244	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0082190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	150	324	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0082190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	91	287	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175642	112175642	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0082190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	222	411	0	ENST00000257430.4:c.4351G>T	p.Glu1451Ter	p.E1451*	ENST00000257430	NM_000038.5	1451	Gaa/Taa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347144	89347144	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765986335		P-0082190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	176	428	0	ENST00000301030.4:c.5806G>A	p.Glu1936Lys	p.E1936K	ENST00000301030	NM_001256183.1	1936	Gag/Aag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162267	47162267	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0082190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	166	382	0	ENST00000409792.3:c.3859C>T	p.Gln1287Ter	p.Q1287*	ENST00000409792	NM_014159.6	1287	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119692	70119692	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0082190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	135	303	0	ENST00000245479.2:c.694C>T	p.Gln232Ter	p.Q232*	ENST00000245479	NM_000346.3	232	Cag/Tag																																																																															
CCND3	896	MSKCC	GRCh37	6	41903761	41903761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	176	396	0	ENST00000372991.4:c.796G>A	p.Ala266Thr	p.A266T	ENST00000372991	NM_001760.3	266	Gcg/Acg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981641	70981641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	74	326	0	ENST00000276594.2:c.455C>T	p.Pro152Leu	p.P152L	ENST00000276594	NM_024504.3	152	cCg/cTg																																																																															
JUN	3725	MSKCC	GRCh37	1	59248271	59248272	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCCGCT			P-0082190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	122	405	0	ENST00000371222.2:c.466_471dup	p.Ser156_Gly157dup	p.S156_G157dup	ENST00000371222	NM_002228.3	156	-/AGCGGC																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206653377	206653377	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376382831		P-0082194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	156	472	0	ENST00000367120.3:c.1261G>A	p.Ala421Thr	p.A421T	ENST00000367120	NM_014002.3	421	Gcc/Acc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44950009	44950009	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0082194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	99	144	0	ENST00000377967.4:c.3780del	p.Lys1260AsnfsTer5	p.K1260Nfs*5	ENST00000377967	NM_021140.2	1260	Aaa/aa																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288249	33288249	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0082202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	252	341	0	ENST00000374542.5:c.1159G>T	p.Glu387Ter	p.E387*	ENST00000374542	NM_001141970.1	387	Gag/Tag																																																																															
PARP1	142	MSKCC	GRCh37	1	226576386	226576386	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	77	411	0	ENST00000366794.5:c.688A>G	p.Lys230Glu	p.K230E	ENST00000366794	NM_001618.3	230	Aag/Gag																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0082206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	85	379	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0082206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	186	374	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225264		P-0082206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	95	387	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457304	67457304	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223765		P-0082206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	31	528	0	ENST00000327367.4:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000327367	NM_005902.3	93	cGa/cAa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981156	201981156	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0082206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	82	410	0	ENST00000359651.3:c.235C>T	p.Gln79Ter	p.Q79*	ENST00000359651		79	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0082206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	76	238	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453150	140453150	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913341		P-0082206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	54	297	0	ENST00000288602.6:c.1785T>A	p.Phe595Leu	p.F595L	ENST00000288602	NM_004333.4	595	ttT/ttA																																																																															
ALK	238	MSKCC	GRCh37	2	29498283	29498283	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	91	458	0	ENST00000389048.3:c.1897G>T	p.Asp633Tyr	p.D633Y	ENST00000389048	NM_004304.4	633	Gac/Tac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247363	153247364	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0082206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	90	381	0	ENST00000281708.4:c.1438_1439del	p.Asp480CysfsTer4	p.D480Cfs*4	ENST00000281708	NM_033632.3	480	GAt/t																																																																															
APC	324	MSKCC	GRCh37	5	112175907	112175907	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	127	467	0	ENST00000257430.4:c.4616del	p.Ser1539Ter	p.S1539*	ENST00000257430	NM_000038.5	1539	tCa/ta																																																																															
KDR	3791	MSKCC	GRCh37	4	55981489	55981489	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	64	234	0	ENST00000263923.4:c.448T>C	p.Cys150Arg	p.C150R	ENST00000263923	NM_002253.2	150	Tgt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0082207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	166	351	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0082207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	111	334	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0082207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	166	421	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TERT	7015	MSKCC	GRCh37	5	1254594	1254594	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35719940		P-0082207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	145	294	0	ENST00000310581.5:c.3184G>A	p.Ala1062Thr	p.A1062T	ENST00000310581	NM_198253.2	1062	Gcc/Acc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129324	152129324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756964962		P-0082207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	149	347	0	ENST00000206249.3:c.277G>A	p.Gly93Ser	p.G93S	ENST00000206249	NM_000125.3	93	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112173600	112173600	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs1060503310		P-0082207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	119	359	0	ENST00000257430.4:c.2309C>G	p.Ser770Ter	p.S770*	ENST00000257430	NM_000038.5	770	tCa/tGa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468225	50468225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	186	395	0	ENST00000331340.3:c.1460G>A	p.Arg487His	p.R487H	ENST00000331340	NM_006060.4	487	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0082207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	94	264	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
MGA	23269	MSKCC	GRCh37	15	42052603	42052603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	199	394	0	ENST00000219905.7:c.7274G>A	p.Arg2425His	p.R2425H	ENST00000219905	NM_001164273.1	2425	cGc/cAc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713506	30713506	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs886038794		P-0082207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	190	417	0	ENST00000359013.4:c.906G>T	p.Lys302Asn	p.K302N	ENST00000359013	NM_001024847.2	302	aaG/aaT																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	96	349	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																																																															
CBL	867	MSKCC	GRCh37	11	119155710	119155710	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	85	349	0	ENST00000264033.4:c.1466del	p.Pro489HisfsTer126	p.P489Hfs*126	ENST00000264033	NM_005188.3	488	gCc/gc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95556850	95556850	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	28	203	0	ENST00000343455.3:c.5754G>C	p.Gln1918His	p.Q1918H	ENST00000343455	NM_177438.2	1918	caG/caC																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2060907	2060907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	52	393	0	ENST00000349721.2:c.1613C>A	p.Ala538Asp	p.A538D	ENST00000349721	NM_003070.3	538	gCc/gAc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43784280	43784280	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	36	355	0	ENST00000382044.4:c.206A>G	p.Asn69Ser	p.N69S	ENST00000382044	NM_001141980.1	69	aAt/aGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0082145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	18	195	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0082145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	283	380	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786425	135786425	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	44	281	0	ENST00000298552.3:c.1105C>G	p.Leu369Val	p.L369V	ENST00000298552	NM_001162426.1	369	Ctg/Gtg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615812	1615812	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771807324		P-0082145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			759	63	371	0	ENST00000344749.5:c.1459C>T	p.Arg487Ter	p.R487*	ENST00000344749	NM_001136139.2	487	Cga/Tga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348371	89348371	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777979146		P-0082145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	227	445	0	ENST00000301030.4:c.4579G>A	p.Asp1527Asn	p.D1527N	ENST00000301030	NM_001256183.1	1527	Gat/Aat																																																																															
CDH1	999	MSKCC	GRCh37	16	68857349	68857349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	84	313	0	ENST00000261769.5:c.1984G>A	p.Asp662Asn	p.D662N	ENST00000261769	NM_004360.3	662	Gac/Aac																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635269	87635269	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0082145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	86	311	0	ENST00000277120.3:c.2321C>G	p.Ser774Ter	p.S774*	ENST00000277120		774	tCa/tGa																																																																															
KLF5	688	MSKCC	GRCh37	13	73633709	73633709	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	64	242	0	ENST00000377687.4:c.244C>G	p.Pro82Ala	p.P82A	ENST00000377687	NM_001730.3	82	Cca/Gca																																																																															
ARAF	369	MSKCC	GRCh37	X	47428969	47428969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	128	324	0	ENST00000377045.4:c.1332G>T	p.Lys444Asn	p.K444N	ENST00000377045	NM_001654.4	444	aaG/aaT																																																																															
KLF5	688	MSKCC	GRCh37	13	73636713	73636713	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			743	145	490	0	ENST00000377687.4:c.976C>G	p.Pro326Ala	p.P326A	ENST00000377687	NM_001730.3	326	Cca/Gca																																																																															
ATM	472	MSKCC	GRCh37	11	108115537	108115537	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	50	278	0	ENST00000278616.4:c.685C>A	p.Leu229Ile	p.L229I	ENST00000278616	NM_000051.3	229	Cta/Ata																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228626	36228626	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0082145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			857	113	404	0	ENST00000222270.7:c.7640T>A	p.Val2547Glu	p.V2547E	ENST00000222270	NM_014727.1	2547	gTg/gAg																																																																															
CDH1	999	MSKCC	GRCh37	16	68867307	68867307	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	109	415	0	ENST00000261769.5:c.2554G>C	p.Glu852Gln	p.E852Q	ENST00000261769	NM_004360.3	852	Gag/Cag																																																																															
SUFU	51684	MSKCC	GRCh37	10	104359200	104359200	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	90	294	0	ENST00000369902.3:c.921G>C	p.Gln307His	p.Q307H	ENST00000369902	NM_016169.3	307	caG/caC																																																																															
KLF5	688	MSKCC	GRCh37	13	73636608	73636608	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0082145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			774	125	509	0	ENST00000377687.4:c.871C>T	p.Gln291Ter	p.Q291*	ENST00000377687	NM_001730.3	291	Cag/Tag																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981484	70981484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			752	21	390	0	ENST00000276594.2:c.612C>G	p.Phe204Leu	p.F204L	ENST00000276594	NM_024504.3	204	ttC/ttG																																																																															
CDH1	999	MSKCC	GRCh37	16	68867339	68867339	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	108	422	0	ENST00000261769.5:c.2586G>C	p.Leu862Phe	p.L862F	ENST00000261769	NM_004360.3	862	ttG/ttC																																																																															
KLF5	688	MSKCC	GRCh37	13	73633674	73633674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	74	246	2	ENST00000377687.4:c.209C>T	p.Pro70Leu	p.P70L	ENST00000377687	NM_001730.3	70	cCg/cTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0082148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	138	376	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578231	7578232	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0082148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	222	492	1	ENST00000269305.4:c.617dup	p.Leu206PhefsTer3	p.L206Ffs*3	ENST00000269305	NM_001126112.2	206	ttg/ttTg																																																																															
APC	324	MSKCC	GRCh37	5	112175342	112175343	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0082148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	289	375	0	ENST00000257430.4:c.4051_4052del	p.Ala1351CysfsTer2	p.A1351Cfs*2	ENST00000257430	NM_000038.5	1351	GCt/t																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21350999	21350999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	160	447	2	ENST00000215739.8:c.2234C>T	p.Ala745Val	p.A745V	ENST00000215739	NM_006767.3	745	gCc/gTc																																																																															
CDH1	999	MSKCC	GRCh37	16	68846135	68846135	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0082150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	150	297	0	ENST00000261769.5:c.1106A>C	p.Asn369Thr	p.N369T	ENST00000261769	NM_004360.3	369	aAc/aCc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259221	36259222	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0082150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	90	336	0	ENST00000300305.3:c.269_270del	p.Val90AlafsTer47	p.V90Afs*47	ENST00000300305		90	gTG/g																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128036872	128036872	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0082150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	81	271	0	ENST00000285398.2:c.1607T>G	p.Met536Arg	p.M536R	ENST00000285398	NM_000122.1	536	aTg/aGg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473723	67473723	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223740		P-0082152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	103	348	0	ENST00000327367.4:c.803G>A	p.Arg268His	p.R268H	ENST00000327367	NM_005902.3	268	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023724	27023734	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCCCCTCC	GCGGCCCCTCC	-			P-0082152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	30	330	0	ENST00000324856.7:c.836_846del	p.Pro279ArgfsTer117	p.P279Rfs*117	ENST00000324856	NM_006015.4	277	gGCGGCCCCTCC/g																																																																															
EP300	2033	MSKCC	GRCh37	22	41523641	41523641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	137	362	0	ENST00000263253.7:c.1057C>T	p.Arg353Cys	p.R353C	ENST00000263253	NM_001429.3	353	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0082152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	42	259	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0077685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	23	612	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928063	178928074	+	inframe_deletion	In_Frame_Del	DEL	AGTACCTCATGG	AGTACCTCATGG	-			P-0077685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	37	470	0	ENST00000263967.3:c.1342_1353del	p.Val448_Gly451del	p.V448_G451del	ENST00000263967	NM_006218.2	447	ccAGTACCTCATGGa/cca																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115921	8115921	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081970-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	745	745	0	ENST00000346208.3:c.1267del	p.His423ThrfsTer52	p.H423Tfs*52	ENST00000346208		423	Cac/ac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0082042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	337	488	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0082042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	453	669	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732996	30732996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104893809		P-0082042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	316	572	0	ENST00000359013.4:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000359013	NM_001024847.2	562	Cgc/Tgc																																																																															
GAB1	2549	MSKCC	GRCh37	4	144378836	144378836	+	intron_variant	Intron	SNP	A	A	G			P-0082042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			28	49	275	0	ENST00000262994.4:c.1586-1702A>G		p.*529*	ENST00000262994	NM_002039.3																																																																																	
ARID1A	8289	MSKCC	GRCh37	1	27023826	27023826	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	398	561	0	ENST00000324856.7:c.932A>G	p.Tyr311Cys	p.Y311C	ENST00000324856	NM_006015.4	311	tAc/tGc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98212194	98212194	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0082042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	185	484	0	ENST00000331920.6:c.3478del	p.Thr1160ProfsTer31	p.T1160Pfs*31	ENST00000331920	NM_000264.3	1160	Acc/cc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0082209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	113	356	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874290	155874290	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs869025192		P-0082209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			760	231	431	0	ENST00000368323.3:c.241G>C	p.Glu81Gln	p.E81Q	ENST00000368323	NM_006912.5	81	Gag/Cag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602748	10602748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	164	515	0	ENST00000171111.5:c.830C>T	p.Thr277Met	p.T277M	ENST00000171111	NM_203500.1	277	aCg/aTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410466	139410466	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764185451		P-0082209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	61	422	0	ENST00000277541.6:c.1636G>A	p.Gly546Arg	p.G546R	ENST00000277541	NM_017617.3	546	Gga/Aga																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843686	156843686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1050	302	594	0	ENST00000524377.1:c.1112C>T	p.Ser371Phe	p.S371F	ENST00000524377	NM_002529.3	371	tCc/tTc																																																																															
IRF4	3662	MSKCC	GRCh37	6	398933	398933	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0082209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	112	301	0	ENST00000380956.4:c.743C>G	p.Ser248Ter	p.S248*	ENST00000380956	NM_001195286.1	248	tCa/tGa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63759957	63759957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	46	384	0	ENST00000279873.7:c.610G>A	p.Asp204Asn	p.D204N	ENST00000279873	NM_032199.2	204	Gac/Aac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528669	8528669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	137	398	0	ENST00000356435.5:c.463C>A	p.Pro155Thr	p.P155T	ENST00000356435		155	Cca/Aca																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602757	10602757	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0082209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	159	524	0	ENST00000171111.5:c.821del	p.His274ProfsTer3	p.H274Pfs*3	ENST00000171111	NM_203500.1	274	cAc/cc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2126141	2126141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	134	425	0	ENST00000219476.3:c.2712C>A	p.Phe904Leu	p.F904L	ENST00000219476	NM_000548.3	904	ttC/ttA																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460428	149460428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	153	436	0	ENST00000286301.3:c.209G>T	p.Ser70Ile	p.S70I	ENST00000286301	NM_005211.3	70	aGc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0082210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	118	419	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0082210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	177	437	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0082210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	76	224	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108200963	108200963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	119	329	0	ENST00000278616.4:c.7330G>A	p.Glu2444Lys	p.E2444K	ENST00000278616	NM_000051.3	2444	Gag/Aag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209616	98209617	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761353734		P-0082210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	34	451	1	ENST00000331920.6:c.3921dup	p.Arg1308GlnfsTer17	p.R1308Qfs*17	ENST00000331920	NM_000264.3	1307	-/C																																																																															
EP300	2033	MSKCC	GRCh37	22	41526008	41526008	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0082210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	32	244	0	ENST00000263253.7:c.1282+1G>A		p.X428_splice	ENST00000263253	NM_001429.3	428																																																																																
MGA	23269	MSKCC	GRCh37	15	42059392	42059392	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs117068470		P-0082210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	93	492	1	ENST00000219905.7:c.9112C>T	p.Arg3038Trp	p.R3038W	ENST00000219905	NM_001164273.1	3038	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0082210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	146	246	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
AXL	558	MSKCC	GRCh37	19	41759552	41759552	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1178677481		P-0082210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	54	356	0	ENST00000301178.4:c.1975G>A	p.Gly659Ser	p.G659S	ENST00000301178	NM_021913.4	659	Ggc/Agc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368237	45368238	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGAGT			P-0082210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	122	351	0	ENST00000262160.6:c.1360_1364dup	p.Met456LeufsTer26	p.M456Lfs*26	ENST00000262160	NM_005901.5	455	cag/caACTCAg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	432790	432790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	61	429	0	ENST00000399788.2:c.2126G>A	p.Cys709Tyr	p.C709Y	ENST00000399788	NM_001042603.1	709	tGc/tAc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104264024	104264024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	45	317	0	ENST00000369902.3:c.115G>A	p.Gly39Arg	p.G39R	ENST00000369902	NM_016169.3	39	Gga/Aga																																																																															
ATM	472	MSKCC	GRCh37	11	108123576	108123576	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0082210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	74	273	0	ENST00000278616.4:c.1835T>A	p.Leu612His	p.L612H	ENST00000278616	NM_000051.3	612	cTt/cAt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222369	2222369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	73	428	0	ENST00000326181.6:c.653C>A	p.Ala218Asp	p.A218D	ENST00000326181	NM_032271.2	218	gCc/gAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0048826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	184	555	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
RHOA	387	MSKCC	GRCh37	3	49405962	49405962	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	175	519	1	ENST00000418115.1:c.176A>G	p.Asp59Gly	p.D59G	ENST00000418115	NM_001664.2	59	gAc/gGc																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731583	47731583	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	77	479	0	ENST00000449228.1:c.209T>C	p.Val70Ala	p.V70A	ENST00000449228	NM_001127240.2	70	gTc/gCc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252886	36252886	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	83	420	0	ENST00000300305.3:c.476del	p.Asn159MetfsTer17	p.N159Mfs*17	ENST00000300305		159	aAt/at																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0061594-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			218	118	254	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177011	56177014	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0061594-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			486	158	399	0	ENST00000399503.3:c.2286_2289del	p.Arg763CysfsTer35	p.R763Cfs*35	ENST00000399503	NM_005921.1	761	ATAGat/at																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061213	38061213	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061594-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			418	286	691	0	ENST00000250448.2:c.776A>G	p.Tyr259Cys	p.Y259C	ENST00000250448	NM_004496.3	259	tAc/tGc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161804	56161804	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0061594-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			340	260	341	0	ENST00000399503.3:c.1301G>A	p.Ser434Asn	p.S434N	ENST00000399503	NM_005921.1	434	aGc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0080678-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			280	18	390	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42839671	42839671	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs572530227		P-0080678-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	20	417	0	ENST00000398585.3:c.1568G>A	p.Arg523Gln	p.R523Q	ENST00000398585	NM_001135099.1	523	cGa/cAa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691856	30691856	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0080678-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	23	467	0	ENST00000359013.4:c.433A>T	p.Lys145Ter	p.K145*	ENST00000359013	NM_001024847.2	145	Aag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55260534	55260534	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0080678-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			174	14	309	1	ENST00000275493.2:c.2701G>C	p.Gly901Arg	p.G901R	ENST00000275493	NM_005228.3	901	Ggg/Cgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431418	49431418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080678-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			453	32	583	0	ENST00000301067.7:c.9721G>A	p.Val3241Ile	p.V3241I	ENST00000301067	NM_003482.3	3241	Gta/Ata																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354363	354363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080678-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			303	20	447	0	ENST00000262320.3:c.1195G>A	p.Val399Met	p.V399M	ENST00000262320	NM_003502.3	399	Gtg/Atg																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032213	26032213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080678-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			598	23	396	0	ENST00000244661.2:c.76G>T	p.Ala26Ser	p.A26S	ENST00000244661	NM_003537.3	26	Gct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7590694	7590694	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0081997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	140	114	0	ENST00000269305.4:c.-29+1G>A		p.X10_splice	ENST00000269305	NM_001126112.2	10																																																																																
ATRX	546	MSKCC	GRCh37	X	76814165	76814165	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0081997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			57	46	38	0	ENST00000373344.5:c.6479T>G	p.Val2160Gly	p.V2160G	ENST00000373344	NM_000489.3	2160	gTt/gGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420408	49420408	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	148	124	0	ENST00000301067.7:c.15341A>G	p.His5114Arg	p.H5114R	ENST00000301067	NM_003482.3	5114	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0082000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	155	285	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0082060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	89	418	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119720900	119720900	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	102	309	0	ENST00000316626.5:c.275G>T	p.Arg92Ile	p.R92I	ENST00000316626		92	aGa/aTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0082060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	87	262	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440769	56440769	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs569008851		P-0082060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	154	488	0	ENST00000407977.2:c.451-2A>G		p.X151_splice	ENST00000407977		151																																																																																
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0082118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	28	104	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0082118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	337	470	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878863	151878863	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0082118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	200	430	0	ENST00000262189.6:c.6082C>T	p.Arg2028Ter	p.R2028*	ENST00000262189	NM_170606.2	2028	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0082118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	116	222	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43773092	43773092	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0082118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	222	323	0	ENST00000382044.4:c.499+1del		p.X167_splice	ENST00000382044	NM_001141980.1	167																																																																																
ALB	213	MSKCC	GRCh37	4	74275116	74275116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	112	300	0	ENST00000295897.4:c.527C>T	p.Pro176Leu	p.P176L	ENST00000295897	NM_000477.5	176	cCg/cTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41536220	41536220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	44	301	0	ENST00000263253.7:c.1837C>T	p.Arg613Trp	p.R613W	ENST00000263253	NM_001429.3	613	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175185	112175185	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0082118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	195	406	0	ENST00000257430.4:c.3894del	p.Ala1299LeufsTer6	p.A1299Lfs*6	ENST00000257430	NM_000038.5	1298	tcT/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0082122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			34	215	534	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117686796	117686796	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759586931		P-0082122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			48	37	343	0	ENST00000368508.3:c.2921C>T	p.Ala974Val	p.A974V	ENST00000368508	NM_002944.2	974	gCg/gTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0082122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	351	293	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18719982	18719982	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0082122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			9	33	231	0	ENST00000266497.5:c.3879A>T	p.Glu1293Asp	p.E1293D	ENST00000266497		1293	gaA/gaT																																																																															
DICER1	23405	MSKCC	GRCh37	14	95572558	95572558	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0082122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			25	10	402	0	ENST00000343455.3:c.2807A>T	p.Tyr936Phe	p.Y936F	ENST00000343455	NM_177438.2	936	tAt/tTt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324642	31324642	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs281864594		P-0082122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	47	432	0	ENST00000412585.2:c.166C>T	p.Gln56Ter	p.Q56*	ENST00000412585	NM_005514.6	56	Cag/Tag																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913355		P-0082123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	26	252	0	ENST00000288602.6:c.1406G>T	p.Gly469Val	p.G469V	ENST00000288602	NM_004333.4	469	gGa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs879253911		P-0082123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			849	51	479	0	ENST00000269305.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000269305	NM_001126112.2	180	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0082123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	19	276	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
KLF5	688	MSKCC	GRCh37	13	73649905	73649905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			709	39	356	0	ENST00000377687.4:c.1255G>A	p.Glu419Lys	p.E419K	ENST00000377687	NM_001730.3	419	Gag/Aag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5239035	5239035	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0082123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			755	41	433	0	ENST00000357368.4:c.1744del	p.Glu582ArgfsTer3	p.E582Rfs*3	ENST00000357368	NM_002850.3	582	Gag/ag																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067388	37067388	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0082123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			784	52	436	0	ENST00000231790.2:c.1299A>T	p.Glu433Asp	p.E433D	ENST00000231790	NM_000249.3	433	gaA/gaT																																																																															
HGF	3082	MSKCC	GRCh37	7	81332075	81332075	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0082123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	20	267	0	ENST00000222390.5:c.2011-2A>T		p.X671_splice	ENST00000222390	NM_000601.4	671																																																																																
KDR	3791	MSKCC	GRCh37	4	55976924	55976924	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	34	266	1	ENST00000263923.4:c.988G>T	p.Val330Phe	p.V330F	ENST00000263923	NM_002253.2	330	Gtt/Ttt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164268	47164268	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0082124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	39	302	0	ENST00000409792.3:c.1858C>T	p.Arg620Ter	p.R620*	ENST00000409792	NM_014159.6	620	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140534506	140534506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	47	358	0	ENST00000288602.6:c.407C>T	p.Ser136Leu	p.S136L	ENST00000288602	NM_004333.4	136	tCa/tTa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348037	348042	+	inframe_deletion	In_Frame_Del	DEL	CCAGGC	CCAGGC	-			P-0082124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			797	51	519	0	ENST00000262320.3:c.1464_1469del	p.Pro489_Gly490del	p.P489_G490del	ENST00000262320	NM_003502.3	488	ggGCCTGGc/ggc																																																																															
CASP8	841	MSKCC	GRCh37	2	202149546	202149546	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1424517508		P-0082124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	43	415	0	ENST00000358485.4:c.987G>C	p.Leu329Phe	p.L329F	ENST00000358485	NM_001080125.1	329	ttG/ttC																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098455	47098455	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0082124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			746	66	433	0	ENST00000409792.3:c.6819G>A	p.Trp2273Ter	p.W2273*	ENST00000409792	NM_014159.6	2273	tgG/tgA																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631339	67631339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	28	317	0	ENST00000272342.5:c.1525G>A	p.Asp509Asn	p.D509N	ENST00000272342	NM_019002.3	509	Gat/Aat																																																																															
BRAF	673	MSKCC	GRCh37	7	140534527	140534527	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0082124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	47	352	0	ENST00000288602.6:c.386C>A	p.Ser129Ter	p.S129*	ENST00000288602	NM_004333.4	129	tCa/tAa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646648	23646648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	44	358	0	ENST00000261584.4:c.1219G>A	p.Glu407Lys	p.E407K	ENST00000261584	NM_024675.3	407	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0082128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	438	407	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0082128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	606	479	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573545	48573545	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	307	410	0	ENST00000342988.3:c.129G>T	p.Leu43Phe	p.L43F	ENST00000342988	NM_005359.5	43	ttG/ttT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0082128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	219	258	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55143586	55143586	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	132	393	0	ENST00000257290.5:c.1818G>C	p.Lys606Asn	p.K606N	ENST00000257290	NM_006206.4	606	aaG/aaC																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118360510	118360510	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0082128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	72	328	0	ENST00000534358.1:c.4483C>G	p.Leu1495Val	p.L1495V	ENST00000534358	NM_005933.3	1495	Ctg/Gtg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15383639	15383639	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0082128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	127	393	0	ENST00000263377.2:c.272A>G	p.Lys91Arg	p.K91R	ENST00000263377	NM_058243.2	91	aAg/aGg																																																																															
BLM	641	MSKCC	GRCh37	15	91337534	91337534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			893	212	252	0	ENST00000355112.3:c.3157G>A	p.Asp1053Asn	p.D1053N	ENST00000355112	NM_000057.2	1053	Gat/Aat																																																																															
TEK	7010	MSKCC	GRCh37	9	27190652	27190652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0082128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	184	370	0	ENST00000380036.4:c.1453C>T	p.Pro485Ser	p.P485S	ENST00000380036	NM_000459.3	485	Ccc/Tcc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038960	12038960	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0082128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	176	298	0	ENST00000396373.4:c.1253G>T	p.Arg418Met	p.R418M	ENST00000396373	NM_001987.4	418	aGg/aTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076916	41076916	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0082128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			741	49	331	0	ENST00000373198.4:c.1504A>T	p.Ile502Phe	p.I502F	ENST00000373198	NM_133170.3	502	Atc/Ttc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123196758	123196758	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0082128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	74	280	0	ENST00000218089.9:c.1645A>T	p.Thr549Ser	p.T549S	ENST00000218089	NM_001042749.1	549	Aca/Tca																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs193920894		P-0082130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	9	378	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942752	44942752	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1457797612		P-0082130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	50	141	0	ENST00000377967.4:c.3332G>C	p.Arg1111Pro	p.R1111P	ENST00000377967	NM_021140.2	1111	cGt/cCt																																																																															
CTR9	9646	MSKCC	GRCh37	11	10791755	10791755	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0082130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	24	322	0	ENST00000361367.2:c.2110-2A>G		p.X704_splice	ENST00000361367	NM_014633.3	704																																																																																
STK11	6794	MSKCC	GRCh37	19	1219381	1219381	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0081598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	163	386	0	ENST00000326873.7:c.433G>T	p.Glu145Ter	p.E145*	ENST00000326873	NM_000455.4	145	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398286	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0081598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	80	300	0	ENST00000256078.4:c.33_34delinsCT	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	11	gcTGgt/gcCTgt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931700	39931700	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	122	385	0	ENST00000378444.4:c.2899G>T	p.Ala967Ser	p.A967S	ENST00000378444	NM_001123385.1	967	Gcc/Tcc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056100	26056100	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	139	521	0	ENST00000343677.2:c.557C>A	p.Ala186Asp	p.A186D	ENST00000343677	NM_005319.3	186	gCc/gAc																																																																															
NF2	4771	MSKCC	GRCh37	22	30070900	30070900	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	129	374	0	ENST00000338641.4:c.1417del	p.Leu473TrpfsTer12	p.L473Wfs*12	ENST00000338641	NM_000268.3	472	ctC/ct																																																																															
ATM	472	MSKCC	GRCh37	11	108216601	108216606	+	inframe_deletion	In_Frame_Del	DEL	GGCTTA	GGCTTA	-			P-0081598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	119	412	0	ENST00000278616.4:c.8550_8555del	p.Leu2850_Tyr2852delinsPhe	p.L2850_Y2852delinsF	ENST00000278616	NM_000051.3	2850	ttGGCTTAt/ttt																																																																															
STK11	6794	MSKCC	GRCh37	19	1226452	1226453	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GACA			P-0081598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	70	369	0	ENST00000326873.7:c.1110_1113dup	p.Val372ThrfsTer233	p.V372Tfs*233	ENST00000326873	NM_000455.4	370	gga/gGACAga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0081969-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			41	10	122	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0081969-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	63	270	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944914	31944914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081969-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	58	240	0	ENST00000340398.3:c.187C>T	p.Arg63Trp	p.R63W	ENST00000340398	NM_001013699.2	63	Cgg/Tgg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45422891	45422891	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0081969-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	74	321	0	ENST00000262160.6:c.236+1G>A		p.X79_splice	ENST00000262160	NM_005901.5	79																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0081969-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	84	332	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0081969-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	61	290	1	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0081969-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	155	460	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108186815	108186815	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0081969-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	129	408	0	ENST00000278616.4:c.6173C>A	p.Ser2058Ter	p.S2058*	ENST00000278616	NM_000051.3	2058	tCa/tAa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457302	67457302	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081969-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	342	618	0	ENST00000327367.4:c.276G>A	p.Trp92Ter	p.W92*	ENST00000327367	NM_005902.3	92	tgG/tgA																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770627	40770627	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081969-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	144	384	0	ENST00000373198.4:c.2755C>T	p.Gln919Ter	p.Q919*	ENST00000373198	NM_133170.3	919	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0081977-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	109	531	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
AR	367	MSKCC	GRCh37	X	66943532	66943532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143040492		P-0081977-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	156	231	0	ENST00000374690.3:c.2612C>T	p.Ala871Val	p.A871V	ENST00000374690	NM_000044.3	871	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577514	7577515	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0081977-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	127	457	0	ENST00000269305.4:c.766dup	p.Thr256AsnfsTer8	p.T256Nfs*8	ENST00000269305	NM_001126112.2	256	aca/aAca																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120028	70120032	+	frameshift_variant	Frame_Shift_Del	DEL	CCACC	CCACC	-			P-0081977-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	186	356	0	ENST00000245479.2:c.1032_1036del	p.Pro345AlafsTer231	p.P345Afs*231	ENST00000245479	NM_000346.3	344	CCACCc/c																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0082039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	112	521	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0082039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	278	595	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
SYK	6850	MSKCC	GRCh37	9	93657854	93657854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	50	618	0	ENST00000375746.1:c.1880G>A	p.Arg627His	p.R627H	ENST00000375746	NM_001174167.1	627	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100312	27100312	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0082039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			875	68	776	0	ENST00000324856.7:c.4024C>T	p.Gln1342Ter	p.Q1342*	ENST00000324856	NM_006015.4	1342	Cag/Tag																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2494665	2494665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779181014		P-0082039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	163	672	0	ENST00000355716.4:c.805G>A	p.Val269Met	p.V269M	ENST00000355716	NM_003820.2	269	Gtg/Atg																																																																															
MED12	9968	MSKCC	GRCh37	X	70343052	70343052	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0082039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	22	314	0	ENST00000374080.3:c.1593G>C	p.Lys531Asn	p.K531N	ENST00000374080		531	aaG/aaC																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971022	21971022	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0082039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	289	697	0	ENST00000304494.5:c.336del	p.Leu113CysfsTer33	p.L113Cfs*33	ENST00000304494	NM_000077.4	112	cgT/cg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998082	169998082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0082039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	77	527	0	ENST00000295797.4:c.773G>A	p.Arg258Gln	p.R258Q	ENST00000295797	NM_002740.5	258	cGg/cAg																																																																															
NBN	4683	MSKCC	GRCh37	8	90960104	90960104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0082039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	91	408	0	ENST00000265433.3:c.1862G>T	p.Gly621Val	p.G621V	ENST00000265433	NM_002485.4	621	gGg/gTg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259449	89259449	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	184	715	0	ENST00000336596.2:c.593A>G	p.Tyr198Cys	p.Y198C	ENST00000336596	NM_005233.5	198	tAc/tGc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40979371	40979371	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0082039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	458	560	0	ENST00000373198.4:c.1763-1G>T		p.X588_splice	ENST00000373198	NM_133170.3	588																																																																																
AXIN2	8313	MSKCC	GRCh37	17	63537658	63537676	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TAAGGAGGAATTCCATCTC	TAAGGAGGAATTCCATCTC	-			P-0082039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	247	484	0	ENST00000307078.5:c.957-1_974del		p.X319_splice	ENST00000307078	NM_004655.3	319																																																																																
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0082040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			834	290	699	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0082040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	71	396	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0082040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	84	423	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279955	18279955	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1202529789		P-0082040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	120	518	0	ENST00000222254.8:c.2038G>A	p.Ala680Thr	p.A680T	ENST00000222254	NM_005027.3	680	Gcg/Acg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11019829	11019830	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAGGCACCT			P-0082040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			949	134	570	0	ENST00000327064.4:c.507_516dup	p.Gln173ArgfsTer21	p.Q173Rfs*21	ENST00000327064	NM_199141.1	168	-/ACAGGCACCT																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40447647	40447647	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769660748		P-0082040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			709	100	535	0	ENST00000345506.4:c.386C>T	p.Pro129Leu	p.P129L	ENST00000345506	NM_003152.3	129	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0082044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	112	544	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0082044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	61	357	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46211657	46211657	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	42	352	0	ENST00000334344.6:c.623G>T	p.Gly208Val	p.G208V	ENST00000334344	NM_152641.2	208	gGg/gTg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739911	41739911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	49	508	0	ENST00000242208.4:c.62C>A	p.Ser21Tyr	p.S21Y	ENST00000242208	NM_002192.2	21	tCc/tAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604785	48604809	+	protein_altering_variant	In_Frame_Del	DEL	TAGACGAAGTACTTCATACCATGCC	TAGACGAAGTACTTCATACCATGCC	A			P-0082044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	50	548	0	ENST00000342988.3:c.1607_1631delinsA	p.Leu536_Pro544delinsGln	p.L536_P544delinsQ	ENST00000342988	NM_005359.5	536	cTAGACGAAGTACTTCATACCATGCCg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0076648-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	40	522	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481829	56481829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076648-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	476	693	0	ENST00000267101.3:c.757G>A	p.Gly253Arg	p.G253R	ENST00000267101	NM_001982.3	253	Gga/Aga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481919	56481919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076648-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			454	428	720	0	ENST00000267101.3:c.847G>A	p.Gly283Arg	p.G283R	ENST00000267101	NM_001982.3	283	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0077834-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			259	59	522	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857275	9857275	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1426934537		P-0077834-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			428	81	634	0	ENST00000330684.3:c.4126C>T	p.Arg1376Cys	p.R1376C	ENST00000330684	NM_001134407.1	1376	Cgc/Tgc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52668743	52668744	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0077834-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			222	97	485	0	ENST00000394830.3:c.1175_1176del	p.Thr392SerfsTer2	p.T392Sfs*2	ENST00000394830	NM_018313.4	392	aCA/a																																																																															
ROS1	6098	MSKCC	GRCh37	6	117708960	117708960	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077834-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			315	38	551	0	ENST00000368508.3:c.1997del	p.Gly666ValfsTer16	p.G666Vfs*16	ENST00000368508	NM_002944.2	666	gGt/gt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987079	36987079	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077834-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			170	51	441	0	ENST00000354822.5:c.610del	p.Tyr204ThrfsTer24	p.Y204Tfs*24	ENST00000354822	NM_001079668.2	204	Tac/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0079920-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			219	120	667	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0079920-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			307	213	425	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902649	50902649	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs878854534		P-0079920-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			264	73	651	0	ENST00000440232.2:c.224T>C	p.Ile75Thr	p.I75T	ENST00000440232	NM_002691.3	75	aTa/aCa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46242696	46242697	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	AG			P-0079920-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			306	30	399	1	ENST00000334344.6:c.1658_1659delinsAG	p.Cys553Ter	p.C553*	ENST00000334344	NM_152641.2	553	tGC/tAG																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971114	21971115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGTCGGGTGAGAGTGGCG			P-0081621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	28	471	0	ENST00000304494.5:c.225_243dup	p.Val82ArgfsTer44	p.V82Rfs*44	ENST00000304494	NM_000077.4	81	-/CGCCACTCTCACCCGACCC																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780289	9780289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201282174		P-0081621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	60	393	0	ENST00000377346.4:c.1459G>A	p.Ala487Thr	p.A487T	ENST00000377346	NM_005026.3	487	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	24	204	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578261	7578282	+	frameshift_variant	Frame_Shift_Del	DEL	TCGGATAAGATGCTGAGGAGGG	TCGGATAAGATGCTGAGGAGGG	-			P-0081621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	56	532	0	ENST00000269305.4:c.567_588del	p.Pro190TrpfsTer50	p.P190Wfs*50	ENST00000269305	NM_001126112.2	189	gcCCCTCCTCAGCATCTTATCCGA/gc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688663	47688663	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	76	368	0	ENST00000347630.2:c.637G>T	p.Ala213Ser	p.A213S	ENST00000347630	NM_001007230.1	213	Gct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578462	7578467	+	inframe_deletion	In_Frame_Del	DEL	GCGGGT	GCGGGT	-			P-0081665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	316	533	0	ENST00000269305.4:c.463_468del	p.Thr155_Arg156del	p.T155_R156del	ENST00000269305	NM_001126112.2	155	ACCCGC/-																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0081665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	165	427	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0081665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	100	382	0				ENST00000310581	NM_198253.2																																																																																	
GLI1	2735	MSKCC	GRCh37	12	57864196	57864196	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs972690369		P-0081939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	444	911	1	ENST00000228682.2:c.1673G>A	p.Arg558His	p.R558H	ENST00000228682	NM_005269.2	558	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0081939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	508	847	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5215553	5215553	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1394993665		P-0081939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			737	171	793	1	ENST00000357368.4:c.4150C>T	p.Arg1384Trp	p.R1384W	ENST00000357368	NM_002850.3	1384	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0081939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	97	308	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175271	112175273	+	stop_gained	Nonsense_Mutation	ONP	CAC	CAC	AAA			P-0081939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	145	680	0	ENST00000257430.4:c.3980_3982delinsAAA	p.Ser1327_Gln1328delinsTer	p.S1327_Q1328delins*	ENST00000257430	NM_000038.5	1327	tCACag/tAAAag																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66525010	66525010	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0081939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	136	465	0	ENST00000358598.2:c.770-1G>T		p.X257_splice	ENST00000358598	NM_212471.2	257																																																																																
CD79A	973	MSKCC	GRCh37	19	42381387	42381387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			724	161	711	0	ENST00000221972.3:c.13C>A	p.Pro5Thr	p.P5T	ENST00000221972	NM_021601.3	5	Cca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0081945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	334	758	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175324	112175324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1211642532		P-0081945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	217	558	0	ENST00000257430.4:c.4033G>T	p.Glu1345Ter	p.E1345*	ENST00000257430	NM_000038.5	1345	Gaa/Taa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59876491	59876491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	108	531	0	ENST00000259008.2:c.1310C>T	p.Pro437Leu	p.P437L	ENST00000259008	NM_032043.2	437	cCc/cTc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533728	63533728	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	282	924	0	ENST00000307078.5:c.1426C>T	p.Gln476Ter	p.Q476*	ENST00000307078	NM_004655.3	476	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831707	72831707	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	307	712	0	ENST00000268489.5:c.4874G>C	p.Arg1625Pro	p.R1625P	ENST00000268489	NM_006885.3	1625	cGg/cCg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465317	120465318	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			P-0081945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	113	691	0	ENST00000256646.2:c.4941_4943dup	p.Ala1648dup	p.A1648dup	ENST00000256646	NM_024408.3	1648	gct/gcAGCt																																																																															
TET1	80312	MSKCC	GRCh37	10	70404792	70404792	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	46	495	0	ENST00000373644.4:c.2308del	p.Thr770GlnfsTer25	p.T770Qfs*25	ENST00000373644	NM_030625.2	769	gAa/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917583	178917585	+	missense_variant	Missense_Mutation	ONP	TTA	TTA	CTG			P-0081945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	155	481	0	ENST00000263967.3:c.458_460delinsCTG	p.Leu153_Arg154delinsProGly	p.L153_R154delinsPG	ENST00000263967	NM_006218.2	153	cTTAgg/cCTGgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0081951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	176	562	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0081951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	176	452	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519975		P-0081951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	201	759	0	ENST00000269305.4:c.403T>C	p.Cys135Arg	p.C135R	ENST00000269305	NM_001126112.2	135	Tgc/Cgc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348157	348157	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1400432084		P-0081951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	205	828	0	ENST00000262320.3:c.1349G>A	p.Arg450His	p.R450H	ENST00000262320	NM_003502.3	450	cGc/cAc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001308	150001308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	138	697	0	ENST00000253339.5:c.2296G>T	p.Val766Phe	p.V766F	ENST00000253339		766	Gtt/Ttt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101296	27101300	+	frameshift_variant	Frame_Shift_Del	DEL	GAACC	GAACC	-			P-0081951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	315	843	0	ENST00000324856.7:c.4582_4586del	p.Thr1529Ter	p.T1529*	ENST00000324856	NM_006015.4	1526	gtGAACCga/gtga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0081960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	40	408	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31368166	31368166	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	101	707	0	ENST00000328111.2:c.37G>T	p.Asp13Tyr	p.D13Y	ENST00000328111	NM_006892.3	13	Gac/Tac																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342853	87342853	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	57	556	0	ENST00000277120.3:c.1138G>C	p.Gly380Arg	p.G380R	ENST00000277120		380	Ggc/Cgc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041632	47041633	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0081960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	59	412	0	ENST00000329236.7:c.1623_1624delinsTT	p.Glu542Ter	p.E542*	ENST00000329236	NM_001204466.1	541	ctGGag/ctTTag																																																																															
NF1	4763	MSKCC	GRCh37	17	29559717	29559717	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0081960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	36	463	0	ENST00000358273.4:c.3315-1G>T		p.X1105_splice	ENST00000358273	NM_001042492.2	1105																																																																																
HOXB13	10481	MSKCC	GRCh37	17	46804373	46804373	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	53	661	0	ENST00000290295.7:c.634G>C	p.Ala212Pro	p.A212P	ENST00000290295	NM_006361.5	212	Gcc/Ccc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0081961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	202	601	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0081961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	170	556	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
SMO	6608	MSKCC	GRCh37	7	128851566	128851566	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	74	500	0	ENST00000249373.3:c.1891G>T	p.Ala631Ser	p.A631S	ENST00000249373	NM_005631.4	631	Gcc/Tcc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259453	16259453	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1291646884		P-0081961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	125	797	0	ENST00000375759.3:c.6718C>T	p.Pro2240Ser	p.P2240S	ENST00000375759	NM_015001.2	2240	Cct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0081961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	126	367	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SDHB	6390	MSKCC	GRCh37	1	17350485	17350485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	24	452	0	ENST00000375499.3:c.625C>T	p.Pro209Ser	p.P209S	ENST00000375499	NM_003000.2	209	Cct/Tct																																																																															
BRCA1	672	MSKCC	GRCh37	17	41247927	41247927	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0081961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	47	457	0	ENST00000357654.3:c.606A>C	p.Gln202His	p.Q202H	ENST00000357654	NM_007294.3	202	caA/caC																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187554	32187554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	110	712	1	ENST00000375023.3:c.1325G>A	p.Gly442Asp	p.G442D	ENST00000375023	NM_004557.3	442	gGc/gAc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965754	93965755	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	TC			P-0081961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	51	472	0	ENST00000369303.4:c.2173-1_2173dup	p.Lys725ArgfsTer12	p.K725Rfs*12	ENST00000369303	NM_004440.3	725	aaa/aGAaa																																																																															
ATRX	546	MSKCC	GRCh37	X	76875960	76875960	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0081961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	59	469	0	ENST00000373344.5:c.5175A>C	p.Lys1725Asn	p.K1725N	ENST00000373344	NM_000489.3	1725	aaA/aaC																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876251	35876251	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs41270321		P-0081961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	82	669	0	ENST00000303115.3:c.1043A>G	p.Asn348Ser	p.N348S	ENST00000303115	NM_002185.3	348	aAc/aGc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628367	187628367	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	171	686	0	ENST00000441802.2:c.2615G>T	p.Ser872Ile	p.S872I	ENST00000441802	NM_005245.3	872	aGc/aTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916199	9916199	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0081961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	179	655	0	ENST00000330684.3:c.2090A>T	p.Asn697Ile	p.N697I	ENST00000330684	NM_001134407.1	697	aAc/aTc																																																																															
MITF	4286	MSKCC	GRCh37	3	70014029	70014029	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0081961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	32	511	0	ENST00000352241.4:c.1193T>G	p.Leu398Arg	p.L398R	ENST00000352241	NM_198159.2	398	cTt/cGt																																																																															
E2F3	1871	MSKCC	GRCh37	6	20483050	20483050	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0081961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	47	542	0	ENST00000346618.3:c.783A>C	p.Lys261Asn	p.K261N	ENST00000346618	NM_001949.4	261	aaA/aaC																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682337	37682337	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	215	736	0	ENST00000447079.4:c.3528G>C	p.Glu1176Asp	p.E1176D	ENST00000447079	NM_015083.1	1176	gaG/gaC																																																																															
FANCA	2175	MSKCC	GRCh37	16	89877460	89877460	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0081961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	59	552	0	ENST00000389301.3:c.303A>C	p.Gln101His	p.Q101H	ENST00000389301	NM_000135.2	101	caA/caC																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201816	66201816	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs556854839		P-0081963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	93	623	1	ENST00000273854.3:c.2686C>T	p.Arg896Cys	p.R896C	ENST00000273854	NM_004439.5	896	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175215	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0081963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	79	768	0	ENST00000257430.4:c.3925_3926del	p.Glu1309LysfsTer5	p.E1309Kfs*5	ENST00000257430	NM_000038.5	1308	aaAGaa/aaaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584569	48584569	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	151	775	0	ENST00000342988.3:c.742C>T	p.Gln248Ter	p.Q248*	ENST00000342988	NM_005359.5	248	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	54	437	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7590694	7590694	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0081963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	167	684	0	ENST00000269305.4:c.-29+1G>A		p.X10_splice	ENST00000269305	NM_001126112.2	10																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11145662	11145662	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0081963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	108	855	0	ENST00000344626.4:c.4024G>T	p.Glu1342Ter	p.E1342*	ENST00000344626	NM_003072.3	1342	Gag/Tag																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42839766	42839766	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	124	746	0	ENST00000398585.3:c.1473G>T	p.Trp491Cys	p.W491C	ENST00000398585	NM_001135099.1	491	tgG/tgT																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873145	136873145	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	124	854	0	ENST00000241393.3:c.353T>C	p.Val118Ala	p.V118A	ENST00000241393	NM_003467.2	118	gTc/gCc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0081965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	46	530	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3832712	3832712	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	51	619	0	ENST00000262367.5:c.1546C>G	p.Gln516Glu	p.Q516E	ENST00000262367	NM_004380.2	516	Cag/Gag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			78	48	429	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0081967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	102	548	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1226617	1226617	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754853898		P-0081967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	43	679	0	ENST00000326873.7:c.1273C>T	p.Arg425Cys	p.R425C	ENST00000326873	NM_000455.4	425	Cgc/Tgc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180557	56180557	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			45	49	498	0	ENST00000399503.3:c.3886A>G	p.Arg1296Gly	p.R1296G	ENST00000399503	NM_005921.1	1296	Aga/Gga																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175958502	175958502	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	31	502	0	ENST00000367669.3:c.1843T>C	p.Ser615Pro	p.S615P	ENST00000367669	NM_022457.5	615	Tct/Cct																																																																															
MGA	23269	MSKCC	GRCh37	15	42042516	42042516	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	80	644	0	ENST00000219905.7:c.6711G>T	p.Leu2237Phe	p.L2237F	ENST00000219905	NM_001164273.1	2237	ttG/ttT																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47425527	47425527	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0081967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	108	755	0	ENST00000404338.3:c.3595A>T	p.Lys1199Ter	p.K1199*	ENST00000404338	NM_004491.4	1199	Aaa/Taa																																																																															
PMS1	5378	MSKCC	GRCh37	2	190708717	190708717	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	45	581	0	ENST00000441310.2:c.610T>C	p.Ser204Pro	p.S204P	ENST00000441310	NM_000534.4	204	Tca/Cca																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26029137	26029137	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			53	60	504	0	ENST00000435504.4:c.213C>G	p.Phe71Leu	p.F71L	ENST00000435504		71	ttC/ttG																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21351067	21351067	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	118	797	0	ENST00000215739.8:c.2302G>C	p.Val768Leu	p.V768L	ENST00000215739	NM_006767.3	768	Gtg/Ctg																																																																															
ATRX	546	MSKCC	GRCh37	X	76909634	76909634	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0081967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			60	16	256	0	ENST00000373344.5:c.4271A>C	p.Lys1424Thr	p.K1424T	ENST00000373344	NM_000489.3	1424	aAa/aCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0081968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	28	267	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0081968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	102	605	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678509	88678509	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373935634		P-0081968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	43	577	0	ENST00000360948.2:c.1027C>T	p.Arg343Trp	p.R343W	ENST00000360948	NM_001012338.2	343	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241706	55241707	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0081968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	98	606	0	ENST00000275493.2:c.2154_2155delinsTT	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	718	ctGGgc/ctTTgc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864814	57864814	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	43	816	0	ENST00000228682.2:c.2291A>G	p.Asn764Ser	p.N764S	ENST00000228682	NM_005269.2	764	aAc/aGc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098655	47098655	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	75	763	0	ENST00000409792.3:c.6619C>T	p.Gln2207Ter	p.Q2207*	ENST00000409792	NM_014159.6	2207	Cag/Tag																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230561488	230561488	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0081968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	70	753	0				ENST00000391860	NM_001258311.1																																																																																	
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0082005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	72	587	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
STAG2	10735	MSKCC	GRCh37	X	123195180	123195180	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	70	327	0	ENST00000218089.9:c.1523G>T	p.Ser508Ile	p.S508I	ENST00000218089	NM_001042749.1	508	aGt/aTt																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38792649	38792649	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0082005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	84	392	0	ENST00000348513.6:c.367A>G	p.Lys123Glu	p.K123E	ENST00000348513	NM_003079.4	123	Aag/Gag																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0082020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	190	380	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0082020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	30	516	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245973	46245973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142127790		P-0082020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	109	471	0	ENST00000334344.6:c.4067C>T	p.Pro1356Leu	p.P1356L	ENST00000334344	NM_152641.2	1356	cCg/cTg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58711272	58711272	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0082020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	118	403	0	ENST00000305921.3:c.760A>G	p.Asn254Asp	p.N254D	ENST00000305921	NM_003620.3	254	Aat/Gat																																																																															
RB1	5925	MSKCC	GRCh37	13	48916810	48916811	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0082020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	58	311	0	ENST00000267163.4:c.341dup	p.Phe115ValfsTer5	p.F115Vfs*5	ENST00000267163	NM_000321.2	114	tcg/tCcg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12421418	12421418	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0082021-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	203	327	0	ENST00000287820.6:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000287820	NM_015869.4	100	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0082024-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	563	511	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398123121		P-0082024-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	181	505	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118392804	118392804	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782088770		P-0082024-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	250	500	0	ENST00000534358.1:c.11836G>A	p.Asp3946Asn	p.D3946N	ENST00000534358	NM_005933.3	3946	Gac/Aac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44733229	44733229	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0082024-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	260	150	0	ENST00000377967.4:c.221G>T	p.Gly74Val	p.G74V	ENST00000377967	NM_021140.2	74	gGc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0042383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	244	422	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0068892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			378	1055	267	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610382	10610382	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			93	363	414	0	ENST00000171111.5:c.328A>T	p.Met110Leu	p.M110L	ENST00000171111	NM_203500.1	110	Atg/Ttg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221329	1221329	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			119	312	364	0	ENST00000326873.7:c.853del	p.Leu285CysfsTer2	p.L285Cfs*2	ENST00000326873	NM_000455.4	284	gaC/ga																																																																															
MALT1	10892	MSKCC	GRCh37	18	56400721	56400724	+	frameshift_variant	Frame_Shift_Del	DEL	TGTC	TGTC	-			P-0068892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	251	326	0	ENST00000348428.3:c.1318_1321del	p.Leu440ValfsTer6	p.L440Vfs*6	ENST00000348428	NM_006785.3	439	TGTCtg/tg																																																																															
MDM4	4194	MSKCC	GRCh37	1	204499901	204499901	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			734	318	300	0	ENST00000367182.3:c.245del	p.Gly82GlufsTer11	p.G82Efs*11	ENST00000367182	NM_001278516.1	81	ttG/tt																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62321651	62321651	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T			P-0068892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			289	302	413	0	ENST00000482936.1:c.2270C>T	p.Pro757Leu	p.P757L	ENST00000482936		757	cCa/cTa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141538	11141538	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			87	345	381	0	ENST00000344626.4:c.3515T>G	p.Ile1172Ser	p.I1172S	ENST00000344626	NM_003072.3	1172	aTc/aGc																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61213529	61213530	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	T			P-0068892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	178	286	0	ENST00000301761.2:c.487_488delinsT	p.Glu163Ter	p.E163*	ENST00000301761	NM_017841.2	163	GAa/Ta																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039686	47039686	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0079417-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			776	47	628	0	ENST00000329236.7:c.904G>T	p.Glu302Ter	p.E302*	ENST00000329236	NM_001204466.1	302	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0079417-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			530	35	421	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
MTOR	2475	MSKCC	GRCh37	1	11169377	11169377	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519916		P-0079539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	304	307	0	ENST00000361445.4:c.7498A>T	p.Ile2500Phe	p.I2500F	ENST00000361445	NM_004958.3	2500	Att/Ttt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061232	38061232	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1486264414		P-0079539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	317	400	0	ENST00000250448.2:c.757A>G	p.Met253Val	p.M253V	ENST00000250448	NM_004496.3	253	Atg/Gtg																																																																															
CDH1	999	MSKCC	GRCh37	16	68857392	68857402	+	frameshift_variant	Frame_Shift_Del	DEL	ACCAAGTGACC	ACCAAGTGACC	-			P-0079539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	265	321	0	ENST00000261769.5:c.2030_2040del	p.Gln677LeufsTer7	p.Q677Lfs*7	ENST00000261769	NM_004360.3	676	gACCAAGTGACC/g																																																																															
SYK	6850	MSKCC	GRCh37	9	93637130	93637130	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0079539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	221	308	0	ENST00000375746.1:c.1180A>C	p.Lys394Gln	p.K394Q	ENST00000375746	NM_001174167.1	394	Aaa/Caa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168539	56168541	+	frameshift_variant	Frame_Shift_Del	DEL	GAT	GAT	AA			P-0079539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	268	299	0	ENST00000399503.3:c.1495_1497delinsAA	p.Asp499AsnfsTer58	p.D499Nfs*58	ENST00000399503	NM_005921.1	499	GAT/AA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0079907-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			212	125	176	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0079907-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			221	288	372	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0079907-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	159	209	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519991		P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			758	256	532	1	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106554952	106554952	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			965	63	529	0	ENST00000369096.4:c.2069C>A	p.Ser690Tyr	p.S690Y	ENST00000369096	NM_001198.3	690	tCc/tAc																																																																															
ATM	472	MSKCC	GRCh37	11	108160488	108160488	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs730881369		P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			252	35	390	0	ENST00000278616.4:c.4396C>T	p.Arg1466Ter	p.R1466*	ENST00000278616	NM_000051.3	1466	Cga/Tga																																																																															
PREX2	80243	MSKCC	GRCh37	8	68989650	68989650	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			339	42	448	0	ENST00000288368.4:c.1588G>T	p.Glu530Ter	p.E530*	ENST00000288368	NM_024870.2	530	Gaa/Taa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31407021	31407021	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1174002360		P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			486	43	468	0	ENST00000344624.3:c.3886C>T	p.Arg1296Ter	p.R1296*	ENST00000344624		1296	Cga/Tga																																																																															
TET2	54790	MSKCC	GRCh37	4	106193946	106193946	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			557	69	443	0	ENST00000380013.4:c.4408G>T	p.Glu1470Ter	p.E1470*	ENST00000380013	NM_001127208.2	1470	Gaa/Taa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602431	10602431	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			733	202	557	0	ENST00000171111.5:c.1147T>C	p.Ser383Pro	p.S383P	ENST00000171111	NM_203500.1	383	Tcg/Ccg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560989	9560989	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			558	99	455	0	ENST00000353224.5:c.793G>T	p.Asp265Tyr	p.D265Y	ENST00000353224	NM_177990.2	265	Gac/Tac																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680704	88680704	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			418	58	394	0	ENST00000360948.2:c.553C>T	p.Gln185Ter	p.Q185*	ENST00000360948	NM_001012338.2	185	Cag/Tag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265388	152265388	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			629	102	514	0	ENST00000206249.3:c.841G>T	p.Gly281Trp	p.G281W	ENST00000206249	NM_000125.3	281	Ggg/Tgg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206769	36206769	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			774	164	568	0	ENST00000300305.3:c.743del	p.Asn248ThrfsTer6	p.N248Tfs*6	ENST00000300305		248	aAc/ac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343922	118343922	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			739	78	539	0	ENST00000534358.1:c.2048A>G	p.His683Arg	p.H683R	ENST00000534358	NM_005933.3	683	cAt/cGt																																																																															
PMS1	5378	MSKCC	GRCh37	2	190670479	190670479	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			124	15	307	0	ENST00000441310.2:c.417A>T	p.Gln139His	p.Q139H	ENST00000441310	NM_000534.4	139	caA/caT																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639527	3639527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			877	98	603	0	ENST00000294008.3:c.4112G>A	p.Arg1371Lys	p.R1371K	ENST00000294008	NM_032444.2	1371	aGg/aAg																																																																															
ALK	238	MSKCC	GRCh37	2	29462691	29462691	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			624	90	462	0	ENST00000389048.3:c.2210C>A	p.Ser737Ter	p.S737*	ENST00000389048	NM_004304.4	737	tCg/tAg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190660597	190660597	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	54	424	0	ENST00000441310.2:c.235A>G	p.Asn79Asp	p.N79D	ENST00000441310	NM_000534.4	79	Aat/Gat																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504002	186504002	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			455	26	428	0	ENST00000323963.5:c.567G>T	p.Leu189Phe	p.L189F	ENST00000323963		189	ttG/ttT																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108648	8108648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			692	204	524	0	ENST00000585124.1:c.747G>A	p.Met249Ile	p.M249I	ENST00000585124	NM_004217.3	249	atG/atA																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881458	111881458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			869	109	524	0	ENST00000393256.3:c.136G>C	p.Gly46Arg	p.G46R	ENST00000393256	NM_006538.4	46	Ggc/Cgc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37872791	37872791	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1034	160	567	0	ENST00000269571.5:c.1671del	p.Arg558GlyfsTer17	p.R558Gfs*17	ENST00000269571		557	gCc/gc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993222	72993222	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			467	126	551	0	ENST00000268489.5:c.823T>A	p.Tyr275Asn	p.Y275N	ENST00000268489	NM_006885.3	275	Tat/Aat																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048750	180048750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			509	165	544	1	ENST00000261937.6:c.1812C>A	p.Asn604Lys	p.N604K	ENST00000261937	NM_182925.4	604	aaC/aaA																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379706	17379706	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			941	145	551	0	ENST00000359435.4:c.91C>G	p.Pro31Ala	p.P31A	ENST00000359435	NM_001033549.1	31	Cct/Gct																																																																															
GAB1	2549	MSKCC	GRCh37	4	144354685	144354685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			370	60	394	0	ENST00000262994.4:c.409G>T	p.Asp137Tyr	p.D137Y	ENST00000262994	NM_002039.3	137	Gat/Tat																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813682	50813682	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			523	93	469	0	ENST00000398568.2:c.1236A>T	p.Arg412Ser	p.R412S	ENST00000398568	NM_001042412.1	412	agA/agT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104611	69104611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			457	81	440	0	ENST00000288368.4:c.4456del	p.Val1486Ter	p.V1486*	ENST00000288368	NM_024870.2	1485	ctG/ct																																																																															
IRF4	3662	MSKCC	GRCh37	6	401423	401423	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			706	93	467	0	ENST00000380956.4:c.746-1G>A		p.X249_splice	ENST00000380956	NM_001195286.1	249																																																																																
E2F3	1871	MSKCC	GRCh37	6	20481653	20481654	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GG	GG	AT			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			489	68	464	0	ENST00000346618.3:c.722_723delinsAT	p.Trp241Tyr	p.W241Y	ENST00000346618	NM_001949.4	241	tGG/tAT																																																																															
ALB	213	MSKCC	GRCh37	4	74285321	74285321	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			292	49	430	0	ENST00000295897.4:c.1750A>C	p.Lys584Gln	p.K584Q	ENST00000295897	NM_000477.5	584	Aag/Cag																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78820351	78820351	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			865	67	485	0	ENST00000306801.3:c.1291G>T	p.Glu431Ter	p.E431*	ENST00000306801	NM_020761.2	431	Gaa/Taa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120780	115120780	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			594	73	548	0	ENST00000257566.3:c.226A>G	p.Ile76Val	p.I76V	ENST00000257566	NM_016569.3	76	Atc/Gtc																																																																															
TET1	80312	MSKCC	GRCh37	10	70451456	70451456	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			508	49	481	0	ENST00000373644.4:c.6296A>C	p.Asn2099Thr	p.N2099T	ENST00000373644	NM_030625.2	2099	aAt/aCt																																																																															
SRC	6714	MSKCC	GRCh37	20	36012680	36012680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			767	90	482	0	ENST00000358208.4:c.124G>T	p.Ala42Ser	p.A42S	ENST00000358208		42	Gcc/Tcc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117686342	117686342	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			164	51	388	0	ENST00000368508.3:c.2999T>A	p.Leu1000Ter	p.L1000*	ENST00000368508	NM_002944.2	1000	tTa/tAa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9927973	9927973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			238	45	413	0	ENST00000330684.3:c.1766C>T	p.Ala589Val	p.A589V	ENST00000330684	NM_001134407.1	589	gCc/gTc																																																																															
CCND2	894	MSKCC	GRCh37	12	4409086	4409086	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			716	64	415	0	ENST00000261254.3:c.781T>A	p.Tyr261Asn	p.Y261N	ENST00000261254	NM_001759.3	261	Tac/Aac																																																																															
KDR	3791	MSKCC	GRCh37	4	55956237	55956239	+	missense_variant	Missense_Mutation	ONP	GTG	GTG	TTT			P-0081168-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	53	401	0	ENST00000263923.4:c.3076_3078delinsAAA	p.His1026Lys	p.H1026K	ENST00000263923	NM_002253.2	1026	CAC/AAA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0081239-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			536	60	440	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1177782647		P-0081239-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			621	47	466	0	ENST00000326873.7:c.842dup	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggCc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249393	153249393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081239-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			553	35	456	0	ENST00000281708.4:c.1385C>T	p.Ser462Phe	p.S462F	ENST00000281708	NM_033632.3	462	tCc/tTc																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020824	26020824	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0081239-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			882	48	604	0	ENST00000357647.3:c.107T>A	p.Val36Glu	p.V36E	ENST00000357647	NM_003529.2	36	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057520006		P-0081336-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	218	467	0	ENST00000269305.4:c.821T>A	p.Val274Asp	p.V274D	ENST00000269305	NM_001126112.2	274	gTt/gAt																																																																															
ATM	472	MSKCC	GRCh37	11	108142084	108142084	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081336-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	83	409	0	ENST00000278616.4:c.3028A>G	p.Asn1010Asp	p.N1010D	ENST00000278616	NM_000051.3	1010	Aac/Gac																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027439	48027439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081336-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	93	421	0	ENST00000234420.5:c.2317C>T	p.Leu773Phe	p.L773F	ENST00000234420	NM_000179.2	773	Ctc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081390-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			333	50	214	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579402	7579418	+	frameshift_variant	Frame_Shift_Del	DEL	AGATGACAGGGGCCAGG	AGATGACAGGGGCCAGG	-			P-0081390-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			707	85	391	0	ENST00000269305.4:c.269_285del	p.Ser90PhefsTer53	p.S90Ffs*53	ENST00000269305	NM_001126112.2	90	tCCTGGCCCCTGTCATCT/t																																																																															
HGF	3082	MSKCC	GRCh37	7	81335047	81335047	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081390-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			400	73	267	0	ENST00000222390.5:c.1780G>T	p.Val594Phe	p.V594F	ENST00000222390	NM_000601.4	594	Gtt/Ttt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180049754	180049754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081390-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			496	46	297	0	ENST00000261937.6:c.1634G>A	p.Arg545Gln	p.R545Q	ENST00000261937	NM_182925.4	545	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0081468-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			215	312	443	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202881	16202881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081468-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			532	32	401	0	ENST00000375759.3:c.589C>T	p.His197Tyr	p.H197Y	ENST00000375759	NM_015001.2	197	Cat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0081468-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			282	144	213	0	ENST00000256078.4:c.34_35delinsCT	p.Gly12Leu	p.G12L	ENST00000256078	NM_033360.2	12	GGt/CTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0081607-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			209	119	334	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081607-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			509	207	380	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298061	15298061	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081607-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			535	64	402	0	ENST00000263388.2:c.1695C>G	p.Ser565Arg	p.S565R	ENST00000263388	NM_000435.2	565	agC/agG																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259537	89259538	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0081607-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			329	51	394	0	ENST00000336596.2:c.684dup	p.Ser229ValfsTer7	p.S229Vfs*7	ENST00000336596	NM_005233.5	227	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0081608-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			721	56	435	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287229	46287229	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0081608-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			752	64	555	0	ENST00000334344.6:c.5174C>G	p.Ser1725Ter	p.S1725*	ENST00000334344	NM_152641.2	1725	tCa/tGa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591108	67591119	+	inframe_deletion	In_Frame_Del	DEL	ACCAGACCTTAT	ACCAGACCTTAT	-			P-0081608-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			590	27	421	0	ENST00000274335.5:c.1701_1712del	p.Lys567_Ile571delinsAsn	p.K567_I571delinsN	ENST00000274335		567	aaACCAGACCTTATc/aac																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504352	186504352	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081608-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			378	9	0	0	ENST00000323963.5:c.689G>C	p.Arg230Thr	p.R230T	ENST00000323963		230	aGa/aCa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932325	36932325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081608-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			947	53	648	0	ENST00000361632.4:c.2144C>T	p.Ser715Leu	p.S715L	ENST00000361632		715	tCa/tTa																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445817	29445817	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081608-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			639	8	0	0	ENST00000544604.2:c.1648G>C	p.Asp550His	p.D550H	ENST00000544604	NM_001206998.1	550	Gac/Cac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118353211	118353211	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0081608-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			617	10	0	0	ENST00000534358.1:c.4086+1G>T		p.X1362_splice	ENST00000534358	NM_005933.3	1362																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120466296	120466296	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081608-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1409	258	471	0	ENST00000256646.2:c.4823G>T	p.Arg1608Ile	p.R1608I	ENST00000256646	NM_024408.3	1608	aGa/aTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0081820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	113	424	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520006		P-0081820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	273	415	0	ENST00000269305.4:c.821T>G	p.Val274Gly	p.V274G	ENST00000269305	NM_001126112.2	274	gTt/gGt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251102	99251102	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	268	476	0	ENST00000268035.6:c.406A>G	p.Ile136Val	p.I136V	ENST00000268035	NM_000875.3	136	Att/Gtt																																																																															
TET1	80312	MSKCC	GRCh37	10	70406671	70406671	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0081821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			37	16	546	0	ENST00000373644.4:c.4185T>A	p.Phe1395Leu	p.F1395L	ENST00000373644	NM_030625.2	1395	ttT/ttA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0081824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	468	435	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508995	106508995	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62001906		P-0081824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	39	552	0	ENST00000359195.3:c.989C>T	p.Thr330Met	p.T330M	ENST00000359195	NM_002649.2	330	aCg/aTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202149793	202149793	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs773127303		P-0081824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	214	640	0	ENST00000358485.4:c.1234A>G	p.Lys412Glu	p.K412E	ENST00000358485	NM_001080125.1	412	Aaa/Gaa																																																																															
TEK	7010	MSKCC	GRCh37	9	27192526	27192526	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776631444		P-0081824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	28	418	0	ENST00000380036.4:c.1529G>A	p.Arg510Gln	p.R510Q	ENST00000380036	NM_000459.3	510	cGg/cAg																																																																															
NF1	4763	MSKCC	GRCh37	17	29586087	29586089	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0081824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			38	63	336	0	ENST00000358273.4:c.4375_4377del	p.Glu1459del	p.E1459del	ENST00000358273	NM_001042492.2	1457	aAAGaa/aaa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564365	86564366	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0081824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	150	592	0	ENST00000274376.6:c.101_102del	p.Cys34SerfsTer77	p.C34Sfs*77	ENST00000274376	NM_002890.2	33	GTg/g																																																																															
APC	324	MSKCC	GRCh37	5	112151216	112151217	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0081824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	127	376	0	ENST00000257430.4:c.859_860del	p.Glu287AsnfsTer8	p.E287Nfs*8	ENST00000257430	NM_000038.5	287	GAa/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0081841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	566	445	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0081841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	92	209	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175746	112175746	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	307	404	0	ENST00000257430.4:c.4455del	p.Asp1486IlefsTer21	p.D1486Ifs*21	ENST00000257430	NM_000038.5	1485	gcT/gc																																																																															
IRF4	3662	MSKCC	GRCh37	6	407527	407527	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs908661692		P-0081841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	78	336	0	ENST00000380956.4:c.1285G>A	p.Asp429Asn	p.D429N	ENST00000380956	NM_001195286.1	429	Gat/Aat																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741395	145741395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368979398		P-0081841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	182	485	0	ENST00000428558.2:c.1108C>T	p.Arg370Cys	p.R370C	ENST00000428558	NM_004260.3	370	Cgt/Tgt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505436	25505436	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	46	328	0	ENST00000264709.3:c.322G>T	p.Gly108Trp	p.G108W	ENST00000264709	NM_175629.2	108	Ggg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0081841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	210	236	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222605	6222605	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	61	406	0	ENST00000252674.7:c.637A>G	p.Ser213Gly	p.S213G	ENST00000252674	NM_005934.3	213	Agc/Ggc																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271426	26271426	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			831	192	561	0	ENST00000305910.3:c.187A>G	p.Ile63Val	p.I63V	ENST00000305910	NM_003534.2	63	Atc/Gtc																																																																															
BTK	695	MSKCC	GRCh37	X	100629583	100629583	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	51	289	0	ENST00000308731.7:c.181A>G	p.Ile61Val	p.I61V	ENST00000308731	NM_000061.2	61	Atc/Gtc																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250443	26250443	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0081841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			831	175	536	0	ENST00000446824.2:c.391A>T	p.Ile131Phe	p.I131F	ENST00000446824	NM_021018.2	131	Att/Ttt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861832	57861832	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774005775		P-0081841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	284	421	0	ENST00000228682.2:c.1133C>T	p.Ser378Leu	p.S378L	ENST00000228682	NM_005269.2	378	tCg/tTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528640	157528640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	209	396	0	ENST00000346085.5:c.6365G>A	p.Arg2122His	p.R2122H	ENST00000346085	NM_020732.3	2122	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs879255270		P-0081842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	218	452	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578250	7578250	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1131691011		P-0081842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	194	493	0	ENST00000269305.4:c.599del	p.Asn200IlefsTer47	p.N200Ifs*47	ENST00000269305	NM_001126112.2	200	aAt/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7578238	7578238	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1260903787		P-0081842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	193	484	0	ENST00000269305.4:c.611A>G	p.Glu204Gly	p.E204G	ENST00000269305	NM_001126112.2	204	gAg/gGg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246051	46246051	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	50	426	0	ENST00000334344.6:c.4146del	p.Asn1383IlefsTer3	p.N1383Ifs*3	ENST00000334344	NM_152641.2	1382	tCc/tc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624265	89624267	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs1114167625		P-0081842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	138	158	0	ENST00000371953.3:c.39_41del	p.Arg15del	p.R15del	ENST00000371953	NM_000314.4	13	aaAAGg/aag																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363241	40363241	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1218116984		P-0081842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	102	440	0	ENST00000397332.2:c.988C>T	p.Arg330Ter	p.R330*	ENST00000397332	NM_001033082.2	330	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175668	112175669	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0081842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	157	462	0	ENST00000257430.4:c.4378dup	p.Ala1460GlyfsTer2	p.A1460Gfs*2	ENST00000257430	NM_000038.5	1459	-/G																																																																															
APC	324	MSKCC	GRCh37	5	112174134	112174135	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TATGCCT			P-0081842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	37	445	0	ENST00000257430.4:c.2850_2856dup	p.Lys953LeufsTer12	p.K953Lfs*12	ENST00000257430	NM_000038.5	948	tct/tcTATGCCTt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123229235	123229235	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			62	151	152	0	ENST00000218089.9:c.3719A>G	p.Asn1240Ser	p.N1240S	ENST00000218089	NM_001042749.1	1240	aAc/aGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916832	178916833	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACTCAAGAAGCAGAA			P-0081842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	27	347	0	ENST00000263967.3:c.221_235dup	p.Thr74_Glu78dup	p.T74_E78dup	ENST00000263967	NM_006218.2	74	-/ACTCAAGAAGCAGAA																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554342	63554343	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0081842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	95	508	0	ENST00000307078.5:c.396dup	p.Ala133SerfsTer8	p.A133Sfs*8	ENST00000307078	NM_004655.3	132	-/A																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73047260	73047260	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	12	319	0	ENST00000356692.5:c.67C>G	p.Pro23Ala	p.P23A	ENST00000356692		23	Cct/Gct																																																																															
AXL	558	MSKCC	GRCh37	19	41745154	41745154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	85	411	0	ENST00000301178.4:c.1220C>T	p.Ala407Val	p.A407V	ENST00000301178	NM_021913.4	407	gCa/gTa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772999	135772999	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0081842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	39	228	0	ENST00000298552.3:c.2626-2A>C		p.X876_splice	ENST00000298552	NM_001162426.1	876																																																																																
EED	8726	MSKCC	GRCh37	11	85956324	85956324	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	362	368	0	ENST00000263360.6:c.53C>G	p.Ala18Gly	p.A18G	ENST00000263360	NM_003797.3	18	gCc/gGc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527691	103527691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	101	343	0	ENST00000355739.4:c.2999C>T	p.Ala1000Val	p.A1000V	ENST00000355739	NM_000123.3	1000	gCa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0081843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	132	311	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0081843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	120	357	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264066389		P-0081843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	130	357	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5265175	5265175	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147257283		P-0081843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	147	420	0	ENST00000357368.4:c.412G>A	p.Asp138Asn	p.D138N	ENST00000357368	NM_002850.3	138	Gac/Aac																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436504	110436504	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760629200		P-0081843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	148	503	0	ENST00000375856.3:c.1897G>A	p.Gly633Arg	p.G633R	ENST00000375856	NM_003749.2	633	Gga/Aga																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856439	111856439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	54	389	0	ENST00000341259.2:c.490G>A	p.Gly164Arg	p.G164R	ENST00000341259	NM_005475.2	164	Ggg/Agg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275640	41275640	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	64	322	0	ENST00000349496.5:c.1535G>C	p.Gly512Ala	p.G512A	ENST00000349496	NM_001904.3	512	gGa/gCa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763290	59763290	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0081843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	87	357	0	ENST00000259008.2:c.2812G>T	p.Glu938Ter	p.E938*	ENST00000259008	NM_032043.2	938	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0081845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	123	409	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351844	89351844	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1041612791		P-0081845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	13	401	2	ENST00000301030.4:c.1106A>G	p.Lys369Arg	p.K369R	ENST00000301030	NM_001256183.1	369	aAg/aGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	64	252	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141568603	141568603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	32	341	1	ENST00000220592.5:c.859C>T	p.Arg287Trp	p.R287W	ENST00000220592	NM_012154.3	287	Cgg/Tgg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146027	38146027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	56	311	0	ENST00000317025.8:c.3479G>A	p.Arg1160Lys	p.R1160K	ENST00000317025	NM_023034.1	1160	aGg/aAg																																																																															
KIT	3815	MSKCC	GRCh37	4	55569937	55569937	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0081845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	19	274	0	ENST00000288135.5:c.804T>G	p.Asn268Lys	p.N268K	ENST00000288135	NM_000222.2	268	aaT/aaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0081874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	156	522	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0081874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	137	615	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087426	27087426	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	62	493	0	ENST00000324856.7:c.2001del	p.Ser668AlafsTer74	p.S668Afs*74	ENST00000324856	NM_006015.4	667	tCc/tc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950727	38950727	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1364147652		P-0081874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	74	393	0	ENST00000357387.3:c.3223C>T	p.Arg1075Ter	p.R1075*	ENST00000357387	NM_152756.3	1075	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437499	49437499	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs186948725		P-0081874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	94	523	0	ENST00000301067.7:c.5386C>T	p.Arg1796Trp	p.R1796W	ENST00000301067	NM_003482.3	1796	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	99	269	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11107048	11107048	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	89	478	0	ENST00000344626.4:c.1757del	p.Lys586ArgfsTer27	p.K586Rfs*27	ENST00000344626	NM_003072.3	585	Aaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0081990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			89	639	469	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439972	56439972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	422	505	0	ENST00000407977.2:c.620G>A	p.Gly207Asp	p.G207D	ENST00000407977		207	gGc/gAc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025912	48025912	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0081990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	407	632	0	ENST00000234420.5:c.790G>T	p.Glu264Ter	p.E264*	ENST00000234420	NM_000179.2	264	Gaa/Taa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257292	16257292	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	348	550	0	ENST00000375759.3:c.4557G>C	p.Glu1519Asp	p.E1519D	ENST00000375759	NM_015001.2	1519	gaG/gaC																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217108	66217108	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0081990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	131	480	0	ENST00000273854.3:c.2507G>T	p.Arg836Met	p.R836M	ENST00000273854	NM_004439.5	836	aGg/aTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575113	48575117	+	frameshift_variant	Frame_Shift_Del	DEL	GATCT	GATCT	C			P-0081990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	107	384	0	ENST00000342988.3:c.307_311delinsC	p.Asp103LeufsTer6	p.D103Lfs*6	ENST00000342988	NM_005359.5	103	GATCTt/Ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7590694	7590711	+	splice_donor_variant,5_prime_UTR_variant	Splice_Site	DEL	CCCAATCCAGGGAAGCGT	CCCAATCCAGGGAAGCGT	-			P-0081334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	127	436	0	ENST00000269305.4:c.-45_-29+1del		p.X15_splice	ENST00000269305	NM_001126112.2	15																																																																																
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0081404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	32	599	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0081404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	112	704	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589812	69589812	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1158890592		P-0081404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	24	838	1	ENST00000168712.1:c.41C>T	p.Ala14Val	p.A14V	ENST00000168712	NM_002007.2	14	gCg/gTg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42851148	42851164	+	frameshift_variant	Frame_Shift_Del	DEL	GTTTCATAAAGCTGGTG	GTTTCATAAAGCTGGTG	-			P-0081404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	38	492	0	ENST00000398585.3:c.729_745del	p.Thr244GlufsTer11	p.T244Efs*11	ENST00000398585	NM_001135099.1	243	tcCACCAGCTTTATGAAACtg/tctg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720823	89720823	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0081404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	18	182	0	ENST00000371953.3:c.974T>A	p.Leu325His	p.L325H	ENST00000371953	NM_000314.4	325	cTt/cAt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330583	65330583	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0081404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	45	581	0	ENST00000342505.4:c.1063G>T	p.Glu355Ter	p.E355*	ENST00000342505	NM_002227.2	355	Gag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111501	8111502	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0081738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	147	533	0	ENST00000346208.3:c.988_989del	p.Arg330GlufsTer21	p.R330Efs*21	ENST00000346208		329	agGAgg/aggg																																																																															
RB1	5925	MSKCC	GRCh37	13	48953760	48953760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913302		P-0081738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	120	213	0	ENST00000267163.4:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000267163	NM_000321.2	455	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs1057517840		P-0081738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	471	601	0	ENST00000269305.4:c.626_627del	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0081738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	150	497	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231603	5231603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	52	224	0	ENST00000357368.4:c.1873G>A	p.Val625Ile	p.V625I	ENST00000357368	NM_002850.3	625	Gtt/Att																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0081740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	136	451	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440886	56440886	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0081740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	84	478	0	ENST00000407977.2:c.450+1G>A		p.X150_splice	ENST00000407977		150																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0081740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	65	294	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EED	8726	MSKCC	GRCh37	11	85977191	85977192	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCAATTCAAAGAGAATGATGAATGCAATTAAGGAATCTTATGAT			P-0081742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	11	358	0	ENST00000263360.6:c.795_838dup	p.Tyr280SerfsTer6	p.Y280Sfs*6	ENST00000263360	NM_003797.3	265	atc/aTCAATTCAAAGAGAATGATGAATGCAATTAAGGAATCTTATGATtc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0081744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	52	402	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519997		P-0081744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	60	416	0	ENST00000269305.4:c.332T>C	p.Leu111Pro	p.L111P	ENST00000269305	NM_001126112.2	111	cTg/cCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	39	275	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NF2	4771	MSKCC	GRCh37	22	30000023	30000023	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	21	286	0	ENST00000338641.4:c.36C>A	p.Ser12Arg	p.S12R	ENST00000338641	NM_000268.3	12	agC/agA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428246	49428246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	126	471	0	ENST00000301067.7:c.10454del	p.Gly3485ValfsTer17	p.G3485Vfs*17	ENST00000301067	NM_003482.3	3485	gGt/gt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250883	153250883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			78	76	292	0	ENST00000281708.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000281708	NM_033632.3	393	Cga/Tga																																																																															
RB1	5925	MSKCC	GRCh37	13	49037969	49037969	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T	rs587778868		P-0081825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	212	247	0	ENST00000267163.4:c.2209G>T	p.Glu737Ter	p.E737*	ENST00000267163	NM_000321.2	737	Gag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542513	187542513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	258	507	0	ENST00000441802.2:c.5227G>A	p.Ala1743Thr	p.A1743T	ENST00000441802	NM_005245.3	1743	Gct/Act																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589713	69589713	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			766	220	729	0	ENST00000168712.1:c.140G>A	p.Trp47Ter	p.W47*	ENST00000168712	NM_002007.2	47	tGg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7590679	7590754	+	splice_donor_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	TCAGTCAGGAGCTTACCCAATCCAGGGAAGCGTGTCACCGTCGTGGAAAGCACGCTCCCAGCCCGAACGCAAAGTG	TCAGTCAGGAGCTTACCCAATCCAGGGAAGCGTGTCACCGTCGTGGAAAGCACGCTCCCAGCCCGAACGCAAAGTG	-			P-0081825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	532	399	0	ENST00000269305.4:c.-88_-29+16del		p.X30_splice	ENST00000269305	NM_001126112.2	30																																																																																
ARAF	369	MSKCC	GRCh37	X	47424703	47424703	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	114	483	0	ENST00000377045.4:c.511C>A	p.Pro171Thr	p.P171T	ENST00000377045	NM_001654.4	171	Ccc/Acc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044941	47044941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	152	476	0	ENST00000329236.7:c.2033G>T	p.Trp678Leu	p.W678L	ENST00000329236	NM_001204466.1	678	tGg/tTg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562675	21562675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	538	481	0	ENST00000382592.4:c.1244G>T	p.Arg415Leu	p.R415L	ENST00000382592	NM_014572.2	415	cGg/cTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29661996	29661996	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0081829-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	33	390	0	ENST00000358273.4:c.5953G>T	p.Glu1985Ter	p.E1985*	ENST00000358273	NM_001042492.2	1985	Gaa/Taa																																																																															
MET	4233	MSKCC	GRCh37	7	116411876	116411901	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	AAGCTCTTTCTTTCTCTCTGTTTTAA	AAGCTCTTTCTTTCTCTCTGTTTTAA	-			P-0081829-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	75	520	0	ENST00000397752.3:c.2888-27_2888-2del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151874527	151874527	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081829-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	61	508	0	ENST00000262189.6:c.8011A>G	p.Thr2671Ala	p.T2671A	ENST00000262189	NM_170606.2	2671	Acg/Gcg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436467	110436467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1000	359	648	0	ENST00000375856.3:c.1934G>A	p.Ser645Asn	p.S645N	ENST00000375856	NM_003749.2	645	aGc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0081830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	199	459	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0081830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	92	345	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0081830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	136	498	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502271	157502271	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs387907141		P-0081830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	228	506	0	ENST00000346085.5:c.3304C>T	p.Arg1102Ter	p.R1102*	ENST00000346085	NM_020732.3	1102	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55238870	55238870	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0081830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	104	273	0	ENST00000275493.2:c.1883G>T	p.Cys628Phe	p.C628F	ENST00000275493	NM_005228.3	628	tGc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0081834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	61	402	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	44	271	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410784	63410785	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0081834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	53	228	0	ENST00000330258.3:c.2382dup	p.Ser795IlefsTer8	p.S795Ifs*8	ENST00000330258	NM_152424.3	794	-/A																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971054	21971061	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCGGCC	CCCCGGCC	-			P-0081834-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	55	403	0	ENST00000304494.5:c.297_304del	p.Gly101AlafsTer16	p.G101Afs*16	ENST00000304494	NM_000077.4	99	cgGGCCGGGGcg/cgcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0081835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	113	541	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919879	50919879	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866317622		P-0081835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			780	50	476	0	ENST00000440232.2:c.2966C>T	p.Thr989Met	p.T989M	ENST00000440232	NM_002691.3	989	aCg/aTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103798	47103798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	116	491	0	ENST00000409792.3:c.6148C>A	p.Gln2050Lys	p.Q2050K	ENST00000409792	NM_014159.6	2050	Caa/Aaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974696	21974699	+	frameshift_variant	Frame_Shift_Del	DEL	TAAC	TAAC	-			P-0081835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	94	514	0	ENST00000304494.5:c.128_131del	p.Ser43ThrfsTer9	p.S43Tfs*9	ENST00000304494	NM_000077.4	43	aGTTAc/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	80	256	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044604	47044604	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0081835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	100	602	0	ENST00000329236.7:c.1866+1G>A		p.X622_splice	ENST00000329236	NM_001204466.1	622																																																																																
SRC	6714	MSKCC	GRCh37	20	36022377	36022377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	98	474	0	ENST00000358208.4:c.430G>T	p.Asp144Tyr	p.D144Y	ENST00000358208		144	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0081836-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	136	487	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604736	48604736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0081836-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	121	470	0	ENST00000342988.3:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000342988	NM_005359.5	520	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081836-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	52	240	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0081837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	146	481	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495511	56495511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	235	566	0	ENST00000267101.3:c.3701C>T	p.Ser1234Phe	p.S1234F	ENST00000267101	NM_001982.3	1234	tCt/tTt																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0081837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	143	308	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411411	63411411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	170	612	0	ENST00000330258.3:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000330258	NM_152424.3	586	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	98	239	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898323	63898323	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	83	198	0	ENST00000295900.6:c.49G>C	p.Ala17Pro	p.A17P	ENST00000295900	NM_000333.3	17	Gcg/Ccg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457657	67457658	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0081837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	156	580	0	ENST00000327367.4:c.468dup	p.Ser157GlnfsTer9	p.S157Qfs*9	ENST00000327367	NM_005902.3	156	tac/taCc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69005874	69005874	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0081837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	133	366	0	ENST00000288368.4:c.2285A>T	p.Glu762Val	p.E762V	ENST00000288368	NM_024870.2	762	gAg/gTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248608	212248608	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0081837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	145	411	0	ENST00000342788.4:c.3659A>T	p.Glu1220Val	p.E1220V	ENST00000342788	NM_005235.2	1220	gAg/gTg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21553916	21553916	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0081837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	160	345	0	ENST00000382592.4:c.2686T>A	p.Trp896Arg	p.W896R	ENST00000382592	NM_014572.2	896	Tgg/Agg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	171	395	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683138	88683138	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	90	375	0	ENST00000372037.3:c.1348G>T	p.Val450Leu	p.V450L	ENST00000372037	NM_004329.2	450	Gtg/Ttg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683357	88683357	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201040		P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	147	527	0	ENST00000372037.3:c.1480C>T	p.Arg494Ter	p.R494*	ENST00000372037	NM_004329.2	494	Cga/Tga																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	92	270	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	87	295	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43739627	43739627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	157	436	0	ENST00000382044.4:c.2773G>A	p.Gly925Ser	p.G925S	ENST00000382044	NM_001141980.1	925	Ggt/Agt																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	131	515	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423514	88423514	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	96	416	0	ENST00000360948.2:c.2321T>C	p.Leu774Pro	p.L774P	ENST00000360948	NM_001012338.2	774	cTc/cCc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346838	89346838	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200724087		P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	111	521	0	ENST00000301030.4:c.6112A>G	p.Lys2038Glu	p.K2038E	ENST00000301030	NM_001256183.1	2038	Aag/Gag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	88	352	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716250	52716250	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769334090		P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	97	550	0	ENST00000322088.6:c.694G>A	p.Ala232Thr	p.A232T	ENST00000322088	NM_014225.5	232	Gcc/Acc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39222520	39222520	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	104	424	3	ENST00000402219.2:c.3090del	p.Lys1030AsnfsTer6	p.K1030Nfs*6	ENST00000402219	NM_005633.3	1030	aaA/aa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	177	583	0	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	132	392	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71037156	71037156	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149759021		P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	120	480	0	ENST00000318789.4:c.1135G>A	p.Ala379Thr	p.A379T	ENST00000318789	NM_032682.5	379	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	97	259	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175447	112175447	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	96	482	0	ENST00000257430.4:c.4156A>T	p.Arg1386Ter	p.R1386*	ENST00000257430	NM_000038.5	1386	Aga/Tga																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	48	363	0				ENST00000310581	NM_198253.2																																																																																	
SDHA	6389	MSKCC	GRCh37	5	236696	236696	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143798161		P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	36	144	0	ENST00000264932.6:c.1414G>A	p.Glu472Lys	p.E472K	ENST00000264932	NM_004168.2	472	Gaa/Aaa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	99	402	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157505443	157505443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	119	492	0	ENST00000346085.5:c.3428del	p.Lys1143SerfsTer68	p.K1143Sfs*68	ENST00000346085	NM_020732.3	1142	Aaa/aa																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345760	152345760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	215	408	0	ENST00000359321.1:c.810del	p.Phe270LeufsTer27	p.F270Lfs*27	ENST00000359321	NM_005431.1	270	ttT/tt																																																																															
TET1	80312	MSKCC	GRCh37	10	70406277	70406277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	129	472	0	ENST00000373644.4:c.3791G>T	p.Ser1264Ile	p.S1264I	ENST00000373644	NM_030625.2	1264	aGc/aTc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21624440	21624440	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	118	499	0	ENST00000421138.2:c.1589C>A	p.Ala530Glu	p.A530E	ENST00000421138		530	gCa/gAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445572	49445572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	145	697	0	ENST00000301067.7:c.1894G>A	p.Asp632Asn	p.D632N	ENST00000301067	NM_003482.3	632	Gac/Aac																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355056	73355056	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	42	446	0	ENST00000377767.4:c.314T>C	p.Val105Ala	p.V105A	ENST00000377767	NM_014953.3	105	gTa/gCa																																																																															
NF1	4763	MSKCC	GRCh37	17	29585464	29585464	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	93	343	0	ENST00000358273.4:c.4276A>G	p.Ile1426Val	p.I1426V	ENST00000358273	NM_001042492.2	1426	Att/Gtt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212558	36212558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	114	556	0	ENST00000222270.7:c.2309C>A	p.Pro770His	p.P770H	ENST00000222270	NM_014727.1	770	cCt/cAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288895	212288895	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	72	450	0	ENST00000342788.4:c.2851A>G	p.Met951Val	p.M951V	ENST00000342788	NM_005235.2	951	Atg/Gtg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375121	31375121	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	134	634	0	ENST00000328111.2:c.518A>G	p.Asp173Gly	p.D173G	ENST00000328111	NM_006892.3	173	gAc/gGc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446298	29446298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	103	456	0	ENST00000544604.2:c.2129G>A	p.Cys710Tyr	p.C710Y	ENST00000544604	NM_001206998.1	710	tGt/tAt																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186506958	186506958	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	120	455	0	ENST00000323963.5:c.1124A>G	p.Asn375Ser	p.N375S	ENST00000323963		375	aAc/aGc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250851	153250851	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	78	336	0	ENST00000281708.4:c.1209A>T	p.Leu403Phe	p.L403F	ENST00000281708	NM_033632.3	403	ttA/ttT																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250870	153250870	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	60	344	0	ENST00000281708.4:c.1190del	p.Gly397ValfsTer7	p.G397Vfs*7	ENST00000281708	NM_033632.3	397	gGt/gt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539080	187539080	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	41	516	0	ENST00000441802.2:c.8660T>C	p.Val2887Ala	p.V2887A	ENST00000441802	NM_005245.3	2887	gTg/gCg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864416	162864416	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs770591350		P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	93	432	0	ENST00000366898.1:c.97C>T	p.Arg33Ter	p.R33*	ENST00000366898	NM_004562.2	33	Cga/Tga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187928	32187928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	127	560	0	ENST00000375023.3:c.1293G>T	p.Gln431His	p.Q431H	ENST00000375023	NM_004557.3	431	caG/caT																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23539048	23539048	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	121	510	0	ENST00000380871.4:c.391T>G	p.Phe131Val	p.F131V	ENST00000380871	NM_006167.3	131	Ttc/Gtc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137293678	137293678	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	108	505	0	ENST00000481739.1:c.229A>G	p.Met77Val	p.M77V	ENST00000481739	NM_002957.4	77	Atg/Gtg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399411	139399411	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	227	532	0	ENST00000277541.6:c.4732G>C	p.Val1578Leu	p.V1578L	ENST00000277541	NM_017617.3	1578	Gtg/Ctg																																																																															
AR	367	MSKCC	GRCh37	X	66905910	66905910	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	116	202	0	ENST00000374690.3:c.1827G>T	p.Arg609Ser	p.R609S	ENST00000374690	NM_000044.3	609	agG/agT																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115272998	115272999	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	34	515	1	ENST00000438362.2:c.1374dup	p.Leu459ThrfsTer30	p.L459Tfs*30	ENST00000438362	NM_001242891.1	458	-/A																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246093208	246093208	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs181459217		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	129	513	0	ENST00000388985.4:c.563C>T	p.Ala188Val	p.A188V	ENST00000388985		188	gCg/gTg																																																																															
STK40	83931	MSKCC	GRCh37	1	36807505	36807505	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200986219		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	119	637	0	ENST00000373129.3:c.1159G>A	p.Glu387Lys	p.E387K	ENST00000373129	NM_032017.1	387	Gag/Aag																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs769210858		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	113	568	3	ENST00000361632.4:c.1404del	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39325150	39325150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	33	579	1	ENST00000373001.3:c.169G>A	p.Ala57Thr	p.A57T	ENST00000373001	NM_022157.3	57	Gct/Act																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798130	45798130	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34126013		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	132	726	0	ENST00000372115.3:c.679C>T	p.Arg227Trp	p.R227W	ENST00000372115	NM_001048171.1	227	Cgg/Tgg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	146	561	1	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9778813	9778813	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1179481484		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	139	620	0	ENST00000377346.4:c.1082C>T	p.Ser361Leu	p.S361L	ENST00000377346	NM_005026.3	361	tCg/tTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	90	459	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123324060	123324060	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1267514450		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	95	413	0	ENST00000358487.5:c.410C>T	p.Thr137Ile	p.T137I	ENST00000358487	NM_000141.4	137	aCc/aTc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	107	489	1	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																															
CBL	867	MSKCC	GRCh37	11	119170274	119170274	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057518072		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	161	609	0	ENST00000264033.4:c.2504G>A	p.Arg835Gln	p.R835Q	ENST00000264033	NM_005188.3	835	cGg/cAg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856626	111856626	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1441752820		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	96	538	1	ENST00000341259.2:c.677G>A	p.Arg226Gln	p.R226Q	ENST00000341259	NM_005475.2	226	cGg/cAg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	153	618	6	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18800900	18800900	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs372507637		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	64	393	0	ENST00000266497.5:c.4276C>T	p.Arg1426Ter	p.R1426*	ENST00000266497		1426	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519803		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	138	571	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436171	110436171	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs558236298		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	41	667	0	ENST00000375856.3:c.2230C>T	p.Arg744Cys	p.R744C	ENST00000375856	NM_003749.2	744	Cgc/Tgc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877407	28877407	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759739030		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	135	451	0	ENST00000282397.4:c.3914G>A	p.Arg1305His	p.R1305H	ENST00000282397	NM_002019.4	1305	cGc/cAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906655	32906655	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	144	501	0	ENST00000380152.3:c.1040A>G	p.Gln347Arg	p.Q347R	ENST00000380152		347	cAa/cGa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32930634	32930634	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56070345		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	162	451	0	ENST00000380152.3:c.7505G>A	p.Arg2502His	p.R2502H	ENST00000380152		2502	cGc/cAc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30108080	30108080	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1239799730		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	45	232	0	ENST00000331968.5:c.727C>T	p.Arg243Ter	p.R243*	ENST00000331968	NM_002742.2	243	Cga/Tga																																																																															
TSHR	7253	MSKCC	GRCh37	14	81554305	81554305	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777252114		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	119	436	0	ENST00000298171.2:c.325C>T	p.Arg109Trp	p.R109W	ENST00000298171	NM_000369.2	109	Cgg/Tgg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582079	95582079	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	170	594	1	ENST00000343455.3:c.1832del	p.Phe611SerfsTer6	p.F611Sfs*6	ENST00000343455	NM_177438.2	611	tTc/tc																																																																															
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	156	581	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																															
B2M	567	MSKCC	GRCh37	15	45007871	45007872	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	142	546	0	ENST00000558401.1:c.319_320del	p.Leu107ValfsTer7	p.L107Vfs*7	ENST00000558401	NM_004048.2	106	acTTtg/actg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420314	88420314	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767941638		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	33	569	1	ENST00000360948.2:c.2372G>A	p.Arg791Gln	p.R791Q	ENST00000360948	NM_001012338.2	791	cGg/cAg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467177	99467177	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149217017		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	101	434	0	ENST00000268035.6:c.2558C>T	p.Pro853Leu	p.P853L	ENST00000268035	NM_000875.3	853	cCg/cTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777951	3777951	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1338620715		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	174	745	0	ENST00000262367.5:c.7097G>A	p.Arg2366Gln	p.R2366Q	ENST00000262367	NM_004380.2	2366	cGg/cAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778282	3778282	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	156	730	0	ENST00000262367.5:c.6766del	p.Leu2256SerfsTer46	p.L2256Sfs*46	ENST00000262367	NM_004380.2	2256	Ctc/tc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67670715	67670715	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	133	532	0	ENST00000264010.4:c.1960C>T	p.Arg654Ter	p.R654*	ENST00000264010	NM_006565.3	654	Cga/Tga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89371709	89371709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1010844836		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	160	628	0	ENST00000301030.4:c.131G>A	p.Arg44His	p.R44H	ENST00000301030	NM_001256183.1	44	cGt/cAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916247	9916247	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753203288		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	42	615	0	ENST00000330684.3:c.2042G>A	p.Arg681Gln	p.R681Q	ENST00000330684	NM_001134407.1	681	cGa/cAa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17125941	17125941	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367843558		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	129	516	0	ENST00000285071.4:c.653G>A	p.Arg218His	p.R218H	ENST00000285071	NM_144997.5	218	cGt/cAt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686907	37686907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	116	383	0	ENST00000447079.4:c.3811G>A	p.Gly1271Arg	p.G1271R	ENST00000447079	NM_015083.1	1271	Gga/Aga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879604	37879604	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1196929947		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	155	663	0	ENST00000269571.5:c.1979G>A	p.Gly660Asp	p.G660D	ENST00000269571		660	gGc/gAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	185	624	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119096	70119096	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	129	595	0	ENST00000245479.2:c.672del	p.Gly225AlafsTer28	p.G225Afs*28	ENST00000245479	NM_000346.3	223	tCc/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	147	539	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262139	10262139	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	135	623	4	ENST00000340748.4:c.2152del	p.Met718CysfsTer59	p.M718Cfs*59	ENST00000340748		718	Atg/tg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15295717	15295717	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1186782199		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	114	565	0	ENST00000263388.2:c.2410G>T	p.Gly804Cys	p.G804C	ENST00000263388	NM_000435.2	804	Ggc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224124	36224124	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	87	387	0	ENST00000222270.7:c.6678del	p.Thr2227ArgfsTer34	p.T2227Rfs*34	ENST00000222270	NM_014727.1	2225	tCc/tc																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	147	704	1	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
CD79A	973	MSKCC	GRCh37	19	42384773	42384773	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782714583		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	91	405	0	ENST00000221972.3:c.535G>A	p.Gly179Arg	p.G179R	ENST00000221972	NM_021601.3	179	Ggg/Agg																																																																															
RRAS	6237	MSKCC	GRCh37	19	50139079	50139079	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs925989732		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	73	392	0	ENST00000246792.3:c.484G>A	p.Ala162Thr	p.A162T	ENST00000246792	NM_006270.3	162	Gcc/Acc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	77	524	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	36	211	1	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245841	5245841	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs532977374		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	128	586	0	ENST00000357368.4:c.934G>A	p.Val312Met	p.V312M	ENST00000357368	NM_002850.3	312	Gtg/Atg																																																																															
INSR	3643	MSKCC	GRCh37	19	7152900	7152900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	35	520	0	ENST00000302850.5:c.2068G>A	p.Glu690Lys	p.E690K	ENST00000302850	NM_000208.2	690	Gag/Aag																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082313	16082314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs780080562		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	141	636	0	ENST00000281043.3:c.134dup	p.Glu47GlyfsTer8	p.E47Gfs*8	ENST00000281043	NM_005378.4	43	acc/aCcc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198260814	198260814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	101	387	0	ENST00000335508.6:c.3505G>A	p.Val1169Ile	p.V1169I	ENST00000335508	NM_012433.2	1169	Gta/Ata																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46611734	46611734	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779305044		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	131	526	0	ENST00000263734.3:c.2548G>A	p.Val850Met	p.V850M	ENST00000263734	NM_001430.4	850	Gtg/Atg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47657020	47657020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63751108		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	141	463	0	ENST00000233146.2:c.1216C>T	p.Arg406Ter	p.R406*	ENST00000233146	NM_000251.2	406	Cga/Tga																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	35	567	4	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
REL	5966	MSKCC	GRCh37	2	61149221	61149221	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761644483		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	152	584	0	ENST00000295025.8:c.1411G>A	p.Gly471Arg	p.G471R	ENST00000295025	NM_002908.2	471	Gga/Aga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023684	31023684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	139	579	0	ENST00000375687.4:c.3169G>A	p.Asp1057Asn	p.D1057N	ENST00000375687	NM_015338.5	1057	Gat/Aat																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31388006	31388006	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121908943		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	173	561	0	ENST00000328111.2:c.1807G>A	p.Ala603Thr	p.A603T	ENST00000328111	NM_006892.3	603	Gct/Act																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31389203	31389203	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs996239307		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	123	571	0	ENST00000328111.2:c.2116G>A	p.Asp706Asn	p.D706N	ENST00000328111	NM_006892.3	706	Gac/Aac																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252869	36252869	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs993436723		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	114	411	0	ENST00000300305.3:c.493G>A	p.Gly165Ser	p.G165S	ENST00000300305		165	Ggt/Agt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	298	524	22	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806162	1806162	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747694886		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	118	678	0	ENST00000260795.2:c.1181C>T	p.Thr394Met	p.T394M	ENST00000260795		394	aCg/aTg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806234	1806234	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781361431		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	126	663	0	ENST00000260795.2:c.1253C>T	p.Pro418Leu	p.P418L	ENST00000260795		418	cCg/cTg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139810	55139810	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs563016888		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	120	553	1	ENST00000257290.5:c.1471G>A	p.Ala491Thr	p.A491T	ENST00000257290	NM_006206.4	491	Gcc/Acc																																																																															
KIT	3815	MSKCC	GRCh37	4	55595567	55595567	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143772138		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	112	427	0	ENST00000288135.5:c.2057G>A	p.Arg686His	p.R686H	ENST00000288135	NM_000222.2	686	cGt/cAt																																																																															
REST	5978	MSKCC	GRCh37	4	57777484	57777484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	42	596	0	ENST00000309042.7:c.680G>A	p.Arg227Gln	p.R227Q	ENST00000309042	NM_005612.4	227	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	119	366	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	142	654	0	ENST00000257430.4:c.4364del	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180052971	180052971	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753074837		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	135	724	0	ENST00000261937.6:c.1319G>A	p.Arg440His	p.R440H	ENST00000261937	NM_182925.4	440	cGc/cAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111736	56111737	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	22	435	0	ENST00000399503.3:c.340dup	p.His114ProfsTer50	p.H114Pfs*50	ENST00000399503	NM_005921.1	112	-/C																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161183	56161183	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765046318		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	87	362	0	ENST00000399503.3:c.1052G>A	p.Arg351His	p.R351H	ENST00000399503	NM_005921.1	351	cGt/cAt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181849	56181849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	86	335	0	ENST00000399503.3:c.4073C>T	p.Ser1358Leu	p.S1358L	ENST00000399503	NM_005921.1	1358	tCg/tTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	80057492	80057492	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	92	389	0	ENST00000265081.6:c.1896del	p.Lys632AsnfsTer9	p.K632Nfs*9	ENST00000265081	NM_002439.4	631	Aaa/aa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662759	117662759	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141448347		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	130	444	0	ENST00000368508.3:c.4706G>A	p.Arg1569Gln	p.R1569Q	ENST00000368508	NM_002944.2	1569	cGg/cAg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157256646	157256646	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	120	474	0	ENST00000346085.5:c.1977del	p.Gly660GlufsTer8	p.G660Efs*8	ENST00000346085	NM_020732.3	658	gCc/gc																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	97	623	3	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729807	41729807	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756546726		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	121	583	0	ENST00000242208.4:c.722G>A	p.Arg241Gln	p.R241Q	ENST00000242208	NM_002192.2	241	cGg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55269020	55269020	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182857647		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	199	716	0	ENST00000275493.2:c.3086C>T	p.Thr1029Met	p.T1029M	ENST00000275493	NM_005228.3	1029	aCg/aTg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	37	827	2	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978658	70978658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	156	549	0	ENST00000276594.2:c.995G>A	p.Arg332His	p.R332H	ENST00000276594	NM_024504.3	332	cGc/cAc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771923	135771923	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753388676		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	158	634	0	ENST00000298552.3:c.3194C>T	p.Thr1065Met	p.T1065M	ENST00000298552	NM_001162426.1	1065	aCg/aTg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137325974	137325974	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs540374192		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	124	570	0	ENST00000481739.1:c.1162G>A	p.Glu388Lys	p.E388K	ENST00000481739	NM_002957.4	388	Gag/Aag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270570	98270570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	78	355	0	ENST00000331920.6:c.74G>A	p.Gly25Glu	p.G25E	ENST00000331920	NM_000264.3	25	gGa/gAa																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	132	746	2	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650859	48650859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	151	618	0	ENST00000376670.3:c.728G>A	p.Arg243Gln	p.R243Q	ENST00000376670	NM_002049.3	243	cGg/cAg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222632	53222632	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782413552		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	130	589	2	ENST00000375401.3:c.4304G>A	p.Arg1435His	p.R1435H	ENST00000375401	NM_004187.3	1435	cGc/cAc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53247105	53247105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	140	572	1	ENST00000375401.3:c.395G>A	p.Arg132His	p.R132H	ENST00000375401	NM_004187.3	132	cGt/cAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70353051	70353051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	128	458	0	ENST00000374080.3:c.4606C>T	p.Arg1536Trp	p.R1536W	ENST00000374080		1536	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108143448	108143448	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	22	410	0	ENST00000278616.4:c.3154-1G>T		p.X1052_splice	ENST00000278616	NM_000051.3	1052																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118392088	118392088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	155	492	0	ENST00000534358.1:c.11599C>T	p.Arg3867Cys	p.R3867C	ENST00000534358	NM_005933.3	3867	Cgc/Tgc																																																																															
HRAS	3265	MSKCC	GRCh37	11	532701	532701	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151229168		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	122	531	0	ENST00000311189.7:c.505C>T	p.Arg169Trp	p.R169W	ENST00000311189		169	Cgg/Tgg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136954	64136954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	103	431	0	ENST00000334205.4:c.1465G>A	p.Gly489Arg	p.G489R	ENST00000334205	NM_003942.2	489	Ggg/Agg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911105	32911105	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	84	440	1	ENST00000380152.3:c.2617del	p.Ile873Ter	p.I873*	ENST00000380152		871	tcA/tc																																																																															
MGA	23269	MSKCC	GRCh37	15	42058577	42058577	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	159	539	0	ENST00000219905.7:c.8297del	p.Glu2766GlyfsTer3	p.E2766Gfs*3	ENST00000219905	NM_001164273.1	2766	gAg/gg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2104392	2104392	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	33	516	0	ENST00000219476.3:c.432G>T	p.Lys144Asn	p.K144N	ENST00000219476	NM_000548.3	144	aaG/aaT																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349264	89349264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	148	569	0	ENST00000301030.4:c.3686C>T	p.Thr1229Met	p.T1229M	ENST00000301030	NM_001256183.1	1229	aCg/aTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351371	89351371	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752451204		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	143	660	0	ENST00000301030.4:c.1579G>A	p.Gly527Arg	p.G527R	ENST00000301030	NM_001256183.1	527	Ggg/Agg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40364186	40364186	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	93	417	0	ENST00000293328.3:c.1496C>A	p.Pro499His	p.P499H	ENST00000293328	NM_012448.3	499	cCt/cAt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226373	2226373	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369642113		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	141	659	0	ENST00000398665.3:c.3853G>A	p.Asp1285Asn	p.D1285N	ENST00000398665	NM_032482.2	1285	Gat/Aat																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218665	36218665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	131	693	0	ENST00000222270.7:c.4369G>A	p.Glu1457Lys	p.E1457K	ENST00000222270	NM_014727.1	1457	Gag/Aag																																																																															
CIC	23152	MSKCC	GRCh37	19	42792098	42792098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	100	560	0	ENST00000575354.2:c.902C>T	p.Ser301Leu	p.S301L	ENST00000575354	NM_015125.3	301	tCg/tTg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424515	47424516	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	180	645	0	ENST00000404338.3:c.2586dup	p.Arg863ThrfsTer2	p.R863Tfs*2	ENST00000404338	NM_004491.4	861	-/A																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503820	47503820	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376344986		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	133	566	0	ENST00000404338.3:c.4375G>A	p.Val1459Ile	p.V1459I	ENST00000404338	NM_004491.4	1459	Gtc/Atc																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630412	67630412	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	92	335	1	ENST00000272342.5:c.602del	p.Asn201IlefsTer5	p.N201Ifs*5	ENST00000272342	NM_019002.3	200	Aaa/aa																																																																															
ATR	545	MSKCC	GRCh37	3	142176471	142176471	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1193437141		P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	100	365	0	ENST00000350721.4:c.7630C>T	p.Arg2544Cys	p.R2544C	ENST00000350721	NM_001184.3	2544	Cgt/Tgt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643686	52643686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	143	501	0	ENST00000394830.3:c.2210C>T	p.Thr737Ile	p.T737I	ENST00000394830	NM_018313.4	737	aCa/aTa																																																																															
SDHA	6389	MSKCC	GRCh37	5	251543	251543	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	116	413	1	ENST00000264932.6:c.1754G>T	p.Arg585Leu	p.R585L	ENST00000264932	NM_004168.2	585	cGg/cTg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555066	106555066	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	43	609	0	ENST00000369096.4:c.2183A>G	p.Glu728Gly	p.E728G	ENST00000369096	NM_001198.3	728	gAa/gGa																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288884	33288884	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	125	580	1	ENST00000374542.5:c.668T>C	p.Leu223Pro	p.L223P	ENST00000374542	NM_001141970.1	223	cTg/cCg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151875074	151875074	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	108	339	0	ENST00000262189.6:c.7464T>A	p.Ser2488Arg	p.S2488R	ENST00000262189	NM_170606.2	2488	agT/agA																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554314	141554314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	111	543	1	ENST00000220592.5:c.1837G>A	p.Ala613Thr	p.A613T	ENST00000220592	NM_012154.3	613	Gcc/Acc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417566	139417566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	111	692	0	ENST00000277541.6:c.478G>T	p.Ala160Ser	p.A160S	ENST00000277541	NM_017617.3	160	Gcc/Tcc																																																																															
ATRX	546	MSKCC	GRCh37	X	76855250	76855250	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	61	371	0	ENST00000373344.5:c.5737T>C	p.Ser1913Pro	p.S1913P	ENST00000373344	NM_000489.3	1913	Tca/Cca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587780070		P-0081886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	296	640	0	ENST00000269305.4:c.535C>A	p.His179Asn	p.H179N	ENST00000269305	NM_001126112.2	179	Cat/Aat																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143350346	143350346	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1483862322		P-0081886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	54	228	0	ENST00000262992.4:c.116C>T	p.Pro39Leu	p.P39L	ENST00000262992	NM_001101669.1	39	cCg/cTg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175861	24175861	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	73	540	0	ENST00000263121.7:c.1089G>T	p.Lys363Asn	p.K363N	ENST00000263121	NM_003073.3	363	aaG/aaT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971025	21971026	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0081886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	265	597	0	ENST00000304494.5:c.332dup	p.Arg112ProfsTer8	p.R112Pfs*8	ENST00000304494	NM_000077.4	111	ggc/ggGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873683	151873683	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0081886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1004	73	724	0	ENST00000262189.6:c.8855C>G	p.Ser2952Ter	p.S2952*	ENST00000262189	NM_170606.2	2952	tCa/tGa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874122	151874122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			869	54	520	0	ENST00000262189.6:c.8416C>T	p.Leu2806Phe	p.L2806F	ENST00000262189	NM_170606.2	2806	Ctc/Ttc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953141	81953141	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	112	598	0	ENST00000359376.3:c.2107G>C	p.Val703Leu	p.V703L	ENST00000359376	NM_002661.3	703	Gtg/Ctg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259714	16259714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	62	692	0	ENST00000375759.3:c.6979C>T	p.Arg2327Trp	p.R2327W	ENST00000375759	NM_015001.2	2327	Cgg/Tgg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120506393	120506393	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	108	486	0	ENST00000256646.2:c.1719C>G	p.Asn573Lys	p.N573K	ENST00000256646	NM_024408.3	573	aaC/aaG																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246443	41246443	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	38	559	0	ENST00000357654.3:c.1105G>T	p.Asp369Tyr	p.D369Y	ENST00000357654	NM_007294.3	369	Gat/Tat																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971226	13971226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	96	514	0	ENST00000405192.2:c.703G>A	p.Val235Met	p.V235M	ENST00000405192	NM_001163147.1	235	Gtg/Atg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873968	151873968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			927	52	610	0	ENST00000262189.6:c.8570C>T	p.Ser2857Phe	p.S2857F	ENST00000262189	NM_170606.2	2857	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0081887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	69	427	0	ENST00000269305.4:c.737T>A	p.Met246Lys	p.M246K	ENST00000269305	NM_001126112.2	246	aTg/aAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0062374-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			322	62	313	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453136	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-	rs397516897		P-0062374-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			116	21	245	0	ENST00000288602.6:c.1799_1801del	p.Val600_Lys601delinsGlu	p.V600_K601delinsE	ENST00000288602	NM_004333.4	600	gTGAaa/gaa																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664910	138664910	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs104893741		P-0062374-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			206	19	192	0	ENST00000330315.3:c.655C>T	p.Gln219Ter	p.Q219*	ENST00000330315	NM_023067.3	219	Cag/Tag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129581	2129581	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062374-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			373	38	331	0	ENST00000219476.3:c.3308G>C	p.Arg1103Thr	p.R1103T	ENST00000219476	NM_000548.3	1103	aGa/aCa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575161	48575161	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0062374-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			138	15	246	0	ENST00000342988.3:c.355T>A	p.Phe119Ile	p.F119I	ENST00000342988	NM_005359.5	119	Ttt/Att																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971206	21971209	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	ACCT	ACCT	G			P-0062374-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	88	278	0	ENST00000304494.5:c.151-2_152delinsC		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519992		P-0081022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	87	528	0	ENST00000269305.4:c.641A>T	p.His214Leu	p.H214L	ENST00000269305	NM_001126112.2	214	cAt/cTt																																																																															
MGA	23269	MSKCC	GRCh37	15	41991331	41991331	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	49	377	0	ENST00000219905.7:c.2162del	p.Gln721ArgfsTer2	p.Q721Rfs*2	ENST00000219905	NM_001164273.1	721	cAg/cg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464917	120464917	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	50	410	0	ENST00000256646.2:c.5155C>T	p.Arg1719Ter	p.R1719*	ENST00000256646	NM_024408.3	1719	Cga/Tga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65305286	65305286	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	39	449	2	ENST00000342505.4:c.2842G>A	p.Gly948Arg	p.G948R	ENST00000342505	NM_002227.2	948	Gga/Aga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65313336	65313336	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1163622258		P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	47	436	0	ENST00000342505.4:c.1778C>T	p.Thr593Met	p.T593M	ENST00000342505	NM_002227.2	593	aCg/aTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	45	454	0	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137793	64137793	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774087398		P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	60	445	0	ENST00000334205.4:c.1894C>T	p.Arg632Cys	p.R632C	ENST00000334205	NM_003942.2	632	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420871	49420871	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	52	507	0	ENST00000301067.7:c.14878C>T	p.Arg4960Ter	p.R4960*	ENST00000301067	NM_003482.3	4960	Cga/Tga																																																																															
MGA	23269	MSKCC	GRCh37	15	42042483	42042483	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	45	540	0	ENST00000219905.7:c.6682del	p.Ser2228ValfsTer10	p.S2228Vfs*10	ENST00000219905	NM_001164273.1	2226	ggA/gg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2130259	2130259	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45448801		P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	65	492	0	ENST00000219476.3:c.3491C>T	p.Ala1164Val	p.A1164V	ENST00000219476	NM_000548.3	1164	gCg/gTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640784	3640784	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs78637028		P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	57	505	0	ENST00000294008.3:c.2855C>T	p.Ala952Val	p.A952V	ENST00000294008	NM_032444.2	952	gCg/gTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89828358	89828358	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs755546887		P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	14	239	0	ENST00000389301.3:c.2851C>T	p.Arg951Trp	p.R951W	ENST00000389301	NM_000135.2	951	Cgg/Tgg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40477027	40477027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	68	421	0	ENST00000264657.5:c.1418C>T	p.Ala473Val	p.A473V	ENST00000264657	NM_139276.2	473	gCc/gTc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	133	522	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250360	10250360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	43	432	0	ENST00000340748.4:c.3892G>A	p.Val1298Met	p.V1298M	ENST00000340748		1298	Gtg/Atg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11172458	11172458	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	20	303	0	ENST00000344626.4:c.4912-2A>C		p.X1638_splice	ENST00000344626	NM_003072.3	1638																																																																																
DNMT3A	1788	MSKCC	GRCh37	2	25497842	25497842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	62	335	0	ENST00000264709.3:c.607C>T	p.Arg203Trp	p.R203W	ENST00000264709	NM_175629.2	203	Cgg/Tgg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	24	454	3	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21345925	21345925	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754364555		P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	47	453	0	ENST00000215739.8:c.800G>A	p.Arg267His	p.R267H	ENST00000215739	NM_006767.3	267	cGc/cAc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37053348	37053348	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1192414628		P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	25	386	0	ENST00000231790.2:c.588del	p.Lys196AsnfsTer6	p.K196Nfs*6	ENST00000231790	NM_000249.3	195	Aaa/aa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442075	52442075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	31	394	0	ENST00000460680.1:c.274G>A	p.Ala92Thr	p.A92T	ENST00000460680	NM_004656.3	92	Gca/Aca																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52588742	52588742	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs145488469		P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	50	390	0	ENST00000394830.3:c.4286C>T	p.Pro1429Leu	p.P1429L	ENST00000394830	NM_018313.4	1429	cCg/cTg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	24	240	0	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495704	72495704	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	52	445	0	ENST00000477973.2:c.366A>G	p.Asn123Ser	p.N123S	ENST00000477973	NM_012234.5	123	aAc/aGc																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345759	152345760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1064793327		P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	38	416	0	ENST00000359321.1:c.810dup	p.Ile271TyrfsTer8	p.I271Yfs*8	ENST00000359321	NM_005431.1	270	-/T																																																																															
TSC1	7248	MSKCC	GRCh37	9	135798765	135798765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	41	391	0	ENST00000298552.3:c.478C>T	p.Arg160Cys	p.R160C	ENST00000298552	NM_001162426.1	160	Cgt/Tgt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98238442	98238442	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	45	437	1	ENST00000331920.6:c.1603-1G>T		p.X535_splice	ENST00000331920	NM_000264.3	535																																																																																
SPEN	23013	MSKCC	GRCh37	1	16261872	16261872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	53	487	0	ENST00000375759.3:c.9137C>T	p.Ala3046Val	p.A3046V	ENST00000375759	NM_015001.2	3046	gCa/gTa																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206647675	206647675	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	48	394	0	ENST00000367120.3:c.89A>G	p.Lys30Arg	p.K30R	ENST00000367120	NM_014002.3	30	aAa/aGa																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246021849	246021849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	47	358	0	ENST00000388985.4:c.1025G>A	p.Gly342Asp	p.G342D	ENST00000388985		342	gGc/gAc																																																																															
ATM	472	MSKCC	GRCh37	11	108142054	108142054	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	37	422	1	ENST00000278616.4:c.2998A>G	p.Asn1000Asp	p.N1000D	ENST00000278616	NM_000051.3	1000	Aac/Gac																																																																															
ATM	472	MSKCC	GRCh37	11	108199848	108199848	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	39	431	0	ENST00000278616.4:c.7190A>G	p.Gln2397Arg	p.Q2397R	ENST00000278616	NM_000051.3	2397	cAa/cGa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871878	12871878	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	51	363	0	ENST00000228872.4:c.595T>C	p.Ter199GlnextTer60	p.*199Qext*60	ENST00000228872	NM_004064.3	199	Taa/Caa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431239	49431239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	67	548	0	ENST00000301067.7:c.9900G>T	p.Glu3300Asp	p.E3300D	ENST00000301067	NM_003482.3	3300	gaG/gaT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447830	49447830	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1364190219		P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	60	453	0	ENST00000301067.7:c.604G>A	p.Gly202Ser	p.G202S	ENST00000301067	NM_003482.3	202	Ggt/Agt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28895613	28895613	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	25	407	0	ENST00000282397.4:c.3161T>C	p.Val1054Ala	p.V1054A	ENST00000282397	NM_002019.4	1054	gTg/gCg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73345056	73345056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	31	350	0	ENST00000377767.4:c.1741G>A	p.Val581Ile	p.V581I	ENST00000377767	NM_014953.3	581	Gtt/Att																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544927	86544927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	57	315	0	ENST00000262426.4:c.752C>T	p.Thr251Ile	p.T251I	ENST00000262426	NM_001451.2	251	aCc/aTc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89857882	89857882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	49	414	0	ENST00000389301.3:c.1288G>A	p.Ala430Thr	p.A430T	ENST00000389301	NM_000135.2	430	Gcg/Acg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56367703	56367703	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	31	346	0	ENST00000348428.3:c.529T>C	p.Phe177Leu	p.F177L	ENST00000348428	NM_006785.3	177	Ttt/Ctt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291927	15291927	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	61	440	0	ENST00000263388.2:c.2839A>G	p.Ser947Gly	p.S947G	ENST00000263388	NM_000435.2	947	Agc/Ggc																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6213364	6213364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	59	438	1	ENST00000252674.7:c.1535G>A	p.Arg512His	p.R512H	ENST00000252674	NM_005934.3	512	cGc/cAc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198285817	198285817	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	43	352	0	ENST00000335508.6:c.236A>G	p.Gln79Arg	p.Q79R	ENST00000335508	NM_012433.2	79	cAg/cGg																																																																															
ALK	238	MSKCC	GRCh37	2	29940501	29940501	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	39	376	0	ENST00000389048.3:c.730A>T	p.Asn244Tyr	p.N244Y	ENST00000389048	NM_004304.4	244	Aat/Tat																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31386354	31386354	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	43	414	0	ENST00000328111.2:c.1579T>C	p.Cys527Arg	p.C527R	ENST00000328111	NM_006892.3	527	Tgt/Cgt																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091741	29091741	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782527		P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	14	137	0	ENST00000328354.6:c.1216C>T	p.Arg406Cys	p.R406C	ENST00000328354	NM_007194.3	406	Cgt/Tgt																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504336	186504336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	23	280	0	ENST00000323963.5:c.673A>G	p.Thr225Ala	p.T225A	ENST00000323963		225	Acc/Gcc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898395	63898395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	49	225	0	ENST00000295900.6:c.121C>T	p.Pro41Ser	p.P41S	ENST00000295900	NM_000333.3	41	Ccg/Tcg																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63975982	63975982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	58	513	0	ENST00000295900.6:c.1492G>A	p.Asp498Asn	p.D498N	ENST00000295900	NM_000333.3	498	Gat/Aat																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332453	153332453	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	51	381	0	ENST00000281708.4:c.501+2T>C		p.X167_splice	ENST00000281708	NM_033632.3	167																																																																																
APC	324	MSKCC	GRCh37	5	112178787	112178787	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	46	543	0	ENST00000257430.4:c.7496T>C	p.Val2499Ala	p.V2499A	ENST00000257430	NM_000038.5	2499	gTt/gCt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449843	149449843	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	47	509	0	ENST00000286301.3:c.1221A>G	p.Ile407Met	p.I407M	ENST00000286301	NM_005211.3	407	atA/atG																																																																															
ETV1	2115	MSKCC	GRCh37	7	13978829	13978829	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	33	364	0	ENST00000405192.2:c.278A>G	p.His93Arg	p.H93R	ENST00000405192	NM_001163147.1	93	cAc/cGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151880166	151880166	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	32	391	0	ENST00000262189.6:c.5158C>T	p.Gln1720Ter	p.Q1720*	ENST00000262189	NM_170606.2	1720	Caa/Taa																																																																															
SYK	6850	MSKCC	GRCh37	9	93606391	93606391	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	58	447	0	ENST00000375746.1:c.211A>G	p.Asn71Asp	p.N71D	ENST00000375746	NM_001174167.1	71	Aat/Gat																																																																															
MED12	9968	MSKCC	GRCh37	X	70343480	70343480	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	17	193	0	ENST00000374080.3:c.1654T>C	p.Ser552Pro	p.S552P	ENST00000374080		552	Tcc/Ccc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72076712	72076712	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0081763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	36	419	0	ENST00000357731.5:c.785A>C	p.Lys262Thr	p.K262T	ENST00000357731	NM_173808.2	262	aAg/aCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0081763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			59	32	278	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574035	7574035	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs867389695		P-0081763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	52	367	0	ENST00000269305.4:c.994-2A>G		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0081763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	138	528	0	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593532	48593532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0081763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			56	42	312	0	ENST00000342988.3:c.1283A>T	p.Lys428Met	p.K428M	ENST00000342988	NM_005359.5	428	aAg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175211	112175212	+	missense_variant	Missense_Mutation	DNP	TA	TA	AA			P-0081763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			70	86	402	0	ENST00000257430.4:c.3920delinsA	p.Ile1307Lys	p.I1307K	ENST00000257430	NM_000038.5	1307	aTA/aAA																																																																															
AR	367	MSKCC	GRCh37	X	66766195	66766195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	56	256	0	ENST00000374690.3:c.1207G>A	p.Ala403Thr	p.A403T	ENST00000374690	NM_000044.3	403	Gcg/Acg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711298	114711299	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCATCATGA			P-0081763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	58	327	0	ENST00000543371.1:c.316_324dup	p.Ile106_Ile108dup	p.I106_I108dup	ENST00000543371	NM_001198531.1	106	ttc/tTCATCATGAtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0081768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	107	385	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106364	27106364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	57	479	0	ENST00000324856.7:c.5975C>T	p.Ser1992Leu	p.S1992L	ENST00000324856	NM_006015.4	1992	tCa/tTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	133	334	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162090	47162090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	53	465	0	ENST00000409792.3:c.4036G>A	p.Gly1346Arg	p.G1346R	ENST00000409792	NM_014159.6	1346	Gga/Aga																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62321671	62321671	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	A	A	G			P-0081768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	110	473	0	ENST00000482936.1:c.2290A>G	p.Thr764Ala	p.T764A	ENST00000482936		764	Aca/Gca																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349110	11349110	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	88	449	0	ENST00000332029.2:c.226G>T	p.Ala76Ser	p.A76S	ENST00000332029	NM_003745.1	76	Gcc/Tcc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131924411	131924411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	49	373	0	ENST00000265335.6:c.1084G>A	p.Glu362Lys	p.E362K	ENST00000265335		362	Gaa/Aaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860496	151860499	+	frameshift_variant	Frame_Shift_Del	DEL	TTGT	TTGT	-			P-0081768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	165	587	0	ENST00000262189.6:c.10163_10166del	p.Asn3388IlefsTer31	p.N3388Ifs*31	ENST00000262189	NM_170606.2	3388	aACAAt/at																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0081779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	11	188	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0081779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	27	330	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945696	17945696	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3213409		P-0081779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	33	499	0	ENST00000458235.1:c.2164G>A	p.Val722Ile	p.V722I	ENST00000458235	NM_000215.3	722	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0081779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	110	388	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0081779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	46	471	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910883	114910883	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1477809102		P-0081779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	98	415	0	ENST00000543371.1:c.1001+1G>A		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																																
CYLD	1540	MSKCC	GRCh37	16	50826550	50826550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	32	259	0	ENST00000398568.2:c.2275G>T	p.Asp759Tyr	p.D759Y	ENST00000398568	NM_001042412.1	759	Gac/Tac																																																																															
MTAP	4507	MSKCC	GRCh37	9	21837987	21837987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	33	312	1	ENST00000380172.4:c.428C>T	p.Pro143Leu	p.P143L	ENST00000380172	NM_002451.3	143	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0081782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	56	354	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0081782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	28	271	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175271	112175271	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0081782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	53	398	0	ENST00000257430.4:c.3980C>G	p.Ser1327Ter	p.S1327*	ENST00000257430	NM_000038.5	1327	tCa/tGa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59857674	59857674	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	24	282	0	ENST00000259008.2:c.1883G>C	p.Gly628Ala	p.G628A	ENST00000259008	NM_032043.2	628	gGt/gCt																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63983319	63983319	+	intron_variant	Intron	SNP	G	G	A			P-0081782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	28	279	1	ENST00000295900.6:c.2661+1160G>A		p.*887*	ENST00000295900	NM_000333.3																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764146326		P-0081784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	169	455	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636766	8636766	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776233840		P-0081784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	133	432	0	ENST00000356435.5:c.143C>T	p.Thr48Met	p.T48M	ENST00000356435		48	aCg/aTg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129427	64129427	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367990117		P-0081784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	75	544	0	ENST00000334205.4:c.859G>A	p.Ala287Thr	p.A287T	ENST00000334205	NM_003942.2	287	Gcg/Acg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118348917	118348918	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0081784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	92	241	0	ENST00000534358.1:c.3569+2dup		p.X1190_splice	ENST00000534358	NM_005933.3	1190																																																																																
ANKRD11	29123	MSKCC	GRCh37	16	89349446	89349448	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0081784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	54	522	0	ENST00000301030.4:c.3502_3504del	p.Ser1168del	p.S1168del	ENST00000301030	NM_001256183.1	1168	TCT/-																																																																															
APC	324	MSKCC	GRCh37	5	112177557	112177557	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	39	409	0	ENST00000257430.4:c.6267del	p.Glu2089AspfsTer23	p.E2089Dfs*23	ENST00000257430	NM_000038.5	2089	gAa/ga																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			130	41	388	0	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			266	108	384	4	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653796	89653798	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			143	12	234	0	ENST00000371953.3:c.97_99del	p.Ile33del	p.I33del	ENST00000371953	NM_000314.4	32	ATT/-																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			291	165	377	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			135	54	410	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			247	118	330	7	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	441055	441055	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778756065		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			175	79	338	1	ENST00000399788.2:c.1703G>A	p.Arg568His	p.R568H	ENST00000399788	NM_001042603.1	568	cGt/cAt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476307	88476307	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772244244		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			71	37	271	0	ENST00000360948.2:c.1825G>A	p.Asp609Asn	p.D609N	ENST00000360948	NM_001012338.2	609	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			110	61	370	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771828	135771828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779599439		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			161	76	382	0	ENST00000298552.3:c.3289C>T	p.Arg1097Cys	p.R1097C	ENST00000298552	NM_001162426.1	1097	Cgt/Tgt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			180	10	284	2	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			168	30	264	0	ENST00000331920.6:c.3921del	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651369	52651369	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs554214396		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			163	78	293	0	ENST00000394830.3:c.1727G>A	p.Arg576His	p.R576H	ENST00000394830	NM_018313.4	576	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108216611	108216611	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201958469		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			100	38	290	0	ENST00000278616.4:c.8560C>T	p.Arg2854Cys	p.R2854C	ENST00000278616	NM_000051.3	2854	Cgc/Tgc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905495	50905495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774030917		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			193	94	380	0	ENST00000440232.2:c.623C>T	p.Pro208Leu	p.P208L	ENST00000440232	NM_002691.3	208	cCg/cTg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553588	106553588	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753673199		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			314	57	375	0	ENST00000369096.4:c.1553C>T	p.Thr518Met	p.T518M	ENST00000369096	NM_001198.3	518	aCg/aTg																																																																															
REL	5966	MSKCC	GRCh37	2	61149129	61149129	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144119768		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			110	53	369	0	ENST00000295025.8:c.1319C>T	p.Ser440Leu	p.S440L	ENST00000295025	NM_002908.2	440	tCg/tTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907421	32907421	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs80359307		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			105	30	370	4	ENST00000380152.3:c.1813del	p.Ile605TyrfsTer9	p.I605Yfs*9	ENST00000380152		602	ggA/gg																																																																															
INHA	3623	MSKCC	GRCh37	2	220439724	220439724	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201577506		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			133	46	431	0	ENST00000243786.2:c.577G>A	p.Val193Ile	p.V193I	ENST00000243786	NM_002191.3	193	Gtc/Atc																																																																															
SYK	6850	MSKCC	GRCh37	9	93639968	93639968	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1480802433		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			192	31	328	0	ENST00000375746.1:c.1297G>A	p.Val433Met	p.V433M	ENST00000375746	NM_001174167.1	433	Gtg/Atg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933640	39933640	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780396086		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			99	69	206	0	ENST00000378444.4:c.959C>T	p.Ala320Val	p.A320V	ENST00000378444	NM_001123385.1	320	gCg/gTg																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			147	77	345	0	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																																																															
RET	5979	MSKCC	GRCh37	10	43597813	43597813	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770548816		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			117	64	401	0	ENST00000355710.3:c.361G>A	p.Val121Ile	p.V121I	ENST00000355710	NM_020975.4	121	Gtc/Atc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185198193	185198193	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs544421900		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			225	109	309	0	ENST00000265026.3:c.2675C>T	p.Thr892Met	p.T892M	ENST00000265026	NM_004721.4	892	aCg/aTg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856365	111856365	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750857643		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			140	63	278	0	ENST00000341259.2:c.416G>A	p.Arg139His	p.R139H	ENST00000341259	NM_005475.2	139	cGc/cAc																																																																															
RB1	5925	MSKCC	GRCh37	13	48954342	48954342	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780248969		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			71	46	219	2	ENST00000267163.4:c.1463C>T	p.Ala488Val	p.A488V	ENST00000267163	NM_000321.2	488	gCg/gTg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131924421	131924421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146370443		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			141	62	266	0	ENST00000265335.6:c.1094G>A	p.Arg365Gln	p.R365Q	ENST00000265335		365	cGa/cAa																																																																															
CIC	23152	MSKCC	GRCh37	19	42791802	42791802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			335	103	395	0	ENST00000575354.2:c.688G>A	p.Val230Ile	p.V230I	ENST00000575354	NM_015125.3	230	Gtc/Atc																																																																															
RARA	5914	MSKCC	GRCh37	17	38512402	38512402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			197	32	211	4	ENST00000254066.5:c.1319del	p.Pro440ArgfsTer203	p.P440Rfs*203	ENST00000254066	NM_000964.3	438	gCc/gc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2103368	2103368	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35660529		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			190	114	203	0	ENST00000219476.3:c.251C>T	p.Ala84Val	p.A84V	ENST00000219476	NM_000548.3	84	gCg/gTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400212	139400212	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764123906		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			244	42	317	0	ENST00000277541.6:c.4136C>T	p.Thr1379Met	p.T1379M	ENST00000277541	NM_017617.3	1379	aCg/aTg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39637978	39637978	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1406322792		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			74	53	294	0	ENST00000262039.4:c.2395C>T	p.Arg799Cys	p.R799C	ENST00000262039	NM_002647.2	799	Cgt/Tgt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067242	37067242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs63750760		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			139	47	232	0	ENST00000231790.2:c.1153C>T	p.Arg385Cys	p.R385C	ENST00000231790	NM_000249.3	385	Cgt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273279	55273279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201717672		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			158	27	331	0	ENST00000275493.2:c.3602C>T	p.Ala1201Val	p.A1201V	ENST00000275493	NM_005228.3	1201	gCg/gTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70342602	70342602	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1268612180		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			79	17	145	0	ENST00000374080.3:c.1363C>T	p.Arg455Trp	p.R455W	ENST00000374080		455	Cgg/Tgg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148525883	148525883	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778968366		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			153	103	275	0	ENST00000320356.2:c.574G>A	p.Asp192Asn	p.D192N	ENST00000320356	NM_004456.4	192	Gat/Aat																																																																															
POLE	5426	MSKCC	GRCh37	12	133244115	133244115	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200825008		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			168	82	280	0	ENST00000320574.5:c.2293C>T	p.Arg765Cys	p.R765C	ENST00000320574	NM_006231.2	765	Cgt/Tgt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39584468	39584468	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1253032956		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			128	48	305	0	ENST00000262039.4:c.1133G>A	p.Arg378His	p.R378H	ENST00000262039	NM_002647.2	378	cGt/cAt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			145	54	253	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40354436	40354436	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			300	93	371	0	ENST00000293328.3:c.2159del	p.Gly720AlafsTer46	p.G720Afs*46	ENST00000293328	NM_012448.3	720	gGc/gc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484206	8484206	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768568228		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			82	14	300	0	ENST00000356435.5:c.3326G>A	p.Arg1109His	p.R1109H	ENST00000356435		1109	cGt/cAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878530	151878530	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1396109953		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			138	75	356	0	ENST00000262189.6:c.6415C>T	p.Arg2139Ter	p.R2139*	ENST00000262189	NM_170606.2	2139	Cga/Tga																																																																															
TERT	7015	MSKCC	GRCh37	5	1294664	1294665	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1060502990		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			127	11	282	0	ENST00000310581.5:c.336dup	p.Glu113ArgfsTer79	p.E113Rfs*79	ENST00000310581	NM_198253.2	112	-/C																																																																															
NSD1	64324	MSKCC	GRCh37	5	176665365	176665365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			179	65	320	0	ENST00000439151.2:c.4049C>T	p.Pro1350Leu	p.P1350L	ENST00000439151	NM_022455.4	1350	cCg/cTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641150	3641150	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757069261		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			255	30	363	0	ENST00000294008.3:c.2489C>T	p.Ala830Val	p.A830V	ENST00000294008	NM_032444.2	830	gCg/gTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134310	2134310	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751203255		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			225	140	382	0	ENST00000219476.3:c.4087G>A	p.Val1363Ile	p.V1363I	ENST00000219476	NM_000548.3	1363	Gtc/Atc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048670	180048670	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1362559080		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			126	38	353	0	ENST00000261937.6:c.1892C>T	p.Ala631Val	p.A631V	ENST00000261937	NM_182925.4	631	gCg/gTg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300039	137300040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755912201		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			220	14	277	1	ENST00000481739.1:c.331dup	p.Leu111ProfsTer70	p.L111Pfs*70	ENST00000481739	NM_002957.4	108	-/C																																																																															
ABL1	25	MSKCC	GRCh37	9	133738315	133738315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			252	124	346	0	ENST00000318560.5:c.715C>T	p.Arg239Cys	p.R239C	ENST00000318560	NM_005157.4	239	Cgc/Tgc																																																																															
ABL1	25	MSKCC	GRCh37	9	133730334	133730334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			213	100	339	0	ENST00000318560.5:c.400C>T	p.Arg134Cys	p.R134C	ENST00000318560	NM_005157.4	134	Cgc/Tgc																																																																															
CD276	80381	MSKCC	GRCh37	15	73994829	73994829	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751833994		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			92	17	146	0	ENST00000318443.5:c.313G>A	p.Ala105Thr	p.A105T	ENST00000318443	NM_001024736.1	105	Gca/Aca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509883	187509883	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769964561		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			264	73	339	0	ENST00000441802.2:c.13630G>A	p.Ala4544Thr	p.A4544T	ENST00000441802	NM_005245.3	4544	Gcc/Acc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230818	66230818	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs910705978		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			70	41	310	0	ENST00000273854.3:c.2153G>A	p.Arg718His	p.R718H	ENST00000273854	NM_004439.5	718	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222953	36222953	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753685124		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			268	18	405	1	ENST00000222270.7:c.5582C>T	p.Ser1861Leu	p.S1861L	ENST00000222270	NM_014727.1	1861	tCg/tTg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478927	56478927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			318	78	289	0	ENST00000267101.3:c.383G>A	p.Ser128Asn	p.S128N	ENST00000267101	NM_001982.3	128	aGc/aAc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609813	81609813	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs925961475		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			120	47	418	0	ENST00000298171.2:c.1411G>A	p.Ala471Thr	p.A471T	ENST00000298171	NM_000369.2	471	Gcc/Acc																																																																															
PAX5	5079	MSKCC	GRCh37	9	37002719	37002719	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757277825		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			208	22	329	0	ENST00000358127.4:c.530C>T	p.Ser177Leu	p.S177L	ENST00000358127	NM_001280556.1	177	tCg/tTg																																																																															
ATM	472	MSKCC	GRCh37	11	108098524	108098524	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148061139		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			150	65	324	0	ENST00000278616.4:c.94C>T	p.Arg32Cys	p.R32C	ENST00000278616	NM_000051.3	32	Cgc/Tgc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399350	139399350	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755124691		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			171	108	338	0	ENST00000277541.6:c.4793G>A	p.Arg1598His	p.R1598H	ENST00000277541	NM_017617.3	1598	cGc/cAc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46543187	46543187	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1296227284		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			112	82	257	2	ENST00000262741.5:c.314G>A	p.Arg105Gln	p.R105Q	ENST00000262741	NM_003629.3	105	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107183	27107183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			257	141	334	0	ENST00000324856.7:c.6794C>T	p.Pro2265Leu	p.P2265L	ENST00000324856	NM_006015.4	2265	cCg/cTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244191	5244191	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1237664443		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			163	70	334	0	ENST00000357368.4:c.1291C>T	p.Arg431Trp	p.R431W	ENST00000357368	NM_002850.3	431	Cgg/Tgg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797846	45797846	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138089183		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			337	99	383	0	ENST00000372115.3:c.883C>T	p.Arg295Cys	p.R295C	ENST00000372115	NM_001048171.1	295	Cgc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258272	16258272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			302	63	369	1	ENST00000375759.3:c.5537G>T	p.Arg1846Met	p.R1846M	ENST00000375759	NM_015001.2	1846	aGg/aTg																																																																															
MST1	4485	MSKCC	GRCh37	3	49721531	49721531	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778105210		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			128	65	215	0	ENST00000449682.2:c.2108G>A	p.Arg703His	p.R703H	ENST00000449682	NM_020998.3	703	cGc/cAc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738499	145738499	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375250269		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			169	99	279	0	ENST00000428558.2:c.2486G>A	p.Arg829His	p.R829H	ENST00000428558	NM_004260.3	829	cGc/cAc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36941169	36941169	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746657668		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			182	97	387	0	ENST00000361632.4:c.170C>T	p.Pro57Leu	p.P57L	ENST00000361632		57	cCg/cTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222119	2222119	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762523174		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			317	55	393	0	ENST00000398665.3:c.2951C>T	p.Thr984Met	p.T984M	ENST00000398665	NM_032482.2	984	aCg/aTg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671741	67671741	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1247514121		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			256	143	350	0	ENST00000264010.4:c.2150C>T	p.Thr717Met	p.T717M	ENST00000264010	NM_006565.3	717	aCg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151932966	151932966	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781191080		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			6	14	16	0	ENST00000262189.6:c.2705C>T	p.Ser902Leu	p.S902L	ENST00000262189	NM_170606.2	902	tCg/tTg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500391	99500391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			121	49	369	0	ENST00000268035.6:c.3824G>A	p.Arg1275Gln	p.R1275Q	ENST00000268035	NM_000875.3	1275	cGg/cAg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919960	50919960	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1440946792		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			133	10	258	0	ENST00000440232.2:c.3047G>A	p.Arg1016His	p.R1016H	ENST00000440232	NM_002691.3	1016	cGc/cAc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155870356	155870356	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			191	83	340	0	ENST00000368323.3:c.483del	p.Phe161LeufsTer47	p.F161Lfs*47	ENST00000368323	NM_006912.5	161	ttT/tt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435300	110435300	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1005601976		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			208	96	386	0	ENST00000375856.3:c.3101C>T	p.Pro1034Leu	p.P1034L	ENST00000375856	NM_003749.2	1034	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			171	15	217	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226967	2226967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			318	32	325	0	ENST00000398665.3:c.4447G>A	p.Ala1483Thr	p.A1483T	ENST00000398665	NM_032482.2	1483	Gcc/Acc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21630862	21630862	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202110155		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			96	51	312	0	ENST00000421138.2:c.742G>A	p.Ala248Thr	p.A248T	ENST00000421138		248	Gca/Aca																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638492	176638492	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780306768		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			228	25	402	0	ENST00000439151.2:c.3092G>A	p.Arg1031Gln	p.R1031Q	ENST00000439151	NM_022455.4	1031	cGa/cAa																																																																															
NADK	65220	MSKCC	GRCh37	1	1688567	1688568	+	intron_variant	Intron	INS	-	-	C	rs746550458		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			225	70	265	0	ENST00000341426.5:c.393+52dup		p.*131*	ENST00000341426	NM_023018.4																																																																																	
MYOD1	4654	MSKCC	GRCh37	11	17741691	17741691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			191	11	313	0	ENST00000250003.3:c.362G>A	p.Arg121His	p.R121H	ENST00000250003	NM_002478.4	121	cGc/cAc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267716	198267716	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			179	11	251	0	ENST00000335508.6:c.1763A>G	p.Tyr588Cys	p.Y588C	ENST00000335508	NM_012433.2	588	tAt/tGt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99189364	99189364	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371978515		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			159	99	323	0	ENST00000074304.5:c.2620G>A	p.Val874Ile	p.V874I	ENST00000074304	NM_001134224.1	874	Gtc/Atc																																																																															
NADK	65220	MSKCC	GRCh37	1	1696692	1696692	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764966748		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			465	61	319	0	ENST00000341426.5:c.154G>A	p.Ala52Thr	p.A52T	ENST00000341426	NM_023018.4	52	Gcc/Acc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639917	3639917	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773723496		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			240	29	325	0	ENST00000294008.3:c.3722G>A	p.Arg1241His	p.R1241H	ENST00000294008	NM_032444.2	1241	cGt/cAt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94194110	94194110	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773469981		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			82	31	199	0	ENST00000323929.3:c.1318G>A	p.Ala440Thr	p.A440T	ENST00000323929	NM_005591.3	440	Gca/Aca																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38272101	38272101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771078736		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			106	49	303	0	ENST00000425967.3:c.2117G>A	p.Arg706Gln	p.R706Q	ENST00000425967	NM_001174067.1	706	cGg/cAg																																																																															
CTR9	9646	MSKCC	GRCh37	11	10786100	10786100	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			185	28	327	1	ENST00000361367.2:c.1424del	p.Leu475TrpfsTer63	p.L475Wfs*63	ENST00000361367	NM_014633.3	473	taT/ta																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526774	31526774	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200906186		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			89	37	240	0	ENST00000344624.3:c.266C>T	p.Ala89Val	p.A89V	ENST00000344624		89	gCg/gTg																																																																															
MST1	4485	MSKCC	GRCh37	3	49723384	49723384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			228	28	278	0	ENST00000449682.2:c.1159G>A	p.Gly387Ser	p.G387S	ENST00000449682	NM_020998.3	387	Ggc/Agc																																																																															
SETD8	387893	MSKCC	GRCh37	12	123880917	123880917	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372757608		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			210	44	274	0	ENST00000330479.4:c.535C>T	p.Arg179Cys	p.R179C	ENST00000330479	NM_020382.3	179	Cgc/Tgc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39239483	39239483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			86	30	190	0	ENST00000402219.2:c.2174C>T	p.Ala725Val	p.A725V	ENST00000402219	NM_005633.3	725	gCa/gTa																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139562798	139562798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146686524		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			194	67	357	0	ENST00000308874.7:c.64C>T	p.His22Tyr	p.H22Y	ENST00000308874		22	Cac/Tac																																																																															
ATR	545	MSKCC	GRCh37	3	142281785	142281785	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			150	25	338	0	ENST00000350721.4:c.459del	p.Phe153LeufsTer12	p.F153Lfs*12	ENST00000350721	NM_001184.3	153	ttT/tt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151875019	151875019	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			124	64	321	1	ENST00000262189.6:c.7519G>T	p.Gly2507Ter	p.G2507*	ENST00000262189	NM_170606.2	2507	Gga/Tga																																																																															
SOS1	6654	MSKCC	GRCh37	2	39262393	39262393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			150	31	337	0	ENST00000402219.2:c.1034C>T	p.Ala345Val	p.A345V	ENST00000402219	NM_005633.3	345	gCc/gTc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36923436	36923436	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747484704		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			112	69	268	0	ENST00000358127.4:c.826G>A	p.Asp276Asn	p.D276N	ENST00000358127	NM_001280556.1	276	Gac/Aac																																																																															
FANCA	2175	MSKCC	GRCh37	16	89838114	89838114	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775960094		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			260	128	348	0	ENST00000389301.3:c.2123C>T	p.Thr708Met	p.T708M	ENST00000389301	NM_000135.2	708	aCg/aTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70450889	70450890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			219	21	340	0	ENST00000373644.4:c.5733dup	p.Thr1912HisfsTer12	p.T1912Hfs*12	ENST00000373644	NM_030625.2	1910	ctc/ctCc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883993	37883993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			344	96	361	0	ENST00000269571.5:c.3464G>A	p.Gly1155Asp	p.G1155D	ENST00000269571		1155	gGc/gAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2130271	2130271	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			356	37	395	0	ENST00000219476.3:c.3503A>C	p.Lys1168Thr	p.K1168T	ENST00000219476	NM_000548.3	1168	aAg/aCg																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652306	36652306	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188428728		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			219	117	260	0	ENST00000244741.5:c.428G>A	p.Arg143Gln	p.R143Q	ENST00000244741	NM_000389.4	143	cGg/cAg																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99850068	99850068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			230	19	218	0	ENST00000280892.6:c.56C>T	p.Ala19Val	p.A19V	ENST00000280892	NM_001130678.1	19	gCg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221502	36221503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			240	91	399	0	ENST00000222270.7:c.5265dup	p.Ile1756HisfsTer63	p.I1756Hfs*63	ENST00000222270	NM_014727.1	1754	ttc/ttCc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139802568	139802568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			292	154	270	0	ENST00000247668.2:c.413C>T	p.Ala138Val	p.A138V	ENST00000247668	NM_021138.3	138	gCg/gTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70404753	70404753	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			185	14	299	0	ENST00000373644.4:c.2267T>C	p.Val756Ala	p.V756A	ENST00000373644	NM_030625.2	756	gTa/gCa																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249309	110249309	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			217	72	300	0	ENST00000374672.4:c.1264G>T	p.Gly422Cys	p.G422C	ENST00000374672	NM_004235.4	422	Ggt/Tgt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468312	120468312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			170	26	343	0	ENST00000256646.2:c.4127C>T	p.Ser1376Leu	p.S1376L	ENST00000256646	NM_024408.3	1376	tCa/tTa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396730	139396730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			145	78	228	0	ENST00000277541.6:c.5378G>A	p.Gly1793Asp	p.G1793D	ENST00000277541	NM_017617.3	1793	gGc/gAc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620499	52620499	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			225	35	325	0	ENST00000394830.3:c.3254A>G	p.Glu1085Gly	p.E1085G	ENST00000394830	NM_018313.4	1085	gAg/gGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49430970	49430970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			251	23	338	0	ENST00000301067.7:c.10169G>A	p.Cys3390Tyr	p.C3390Y	ENST00000301067	NM_003482.3	3390	tGc/tAc																																																																															
RAC2	5880	MSKCC	GRCh37	22	37628007	37628007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			199	83	299	0	ENST00000249071.6:c.253G>A	p.Val85Ile	p.V85I	ENST00000249071	NM_002872.4	85	Gtc/Atc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2122914	2122914	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			221	95	328	0	ENST00000219476.3:c.2285T>C	p.Leu762Ser	p.L762S	ENST00000219476	NM_000548.3	762	tTg/tCg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43720215	43720215	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			191	23	225	0	ENST00000382044.4:c.3827A>G	p.Glu1276Gly	p.E1276G	ENST00000382044	NM_001141980.1	1276	gAg/gGg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2130279	2130298	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGGCACCCGGGTTCCTGT	GCTGGCACCCGGGTTCCTGT	-			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			347	40	378	0	ENST00000219476.3:c.3513_3532del	p.Thr1173GlufsTer54	p.T1173Efs*54	ENST00000219476	NM_000548.3	1171	GCTGGCACCCGGGTTCCTGTg/g																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231487263	231487263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			154	59	340	0	ENST00000295050.7:c.664G>A	p.Gly222Ser	p.G222S	ENST00000295050	NM_032018.5	222	Ggc/Agc																																																																															
MED12	9968	MSKCC	GRCh37	X	70356302	70356302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			128	15	186	0	ENST00000374080.3:c.5197C>T	p.Arg1733Trp	p.R1733W	ENST00000374080		1733	Cgg/Tgg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777138	9777138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			188	82	341	0	ENST00000377346.4:c.902C>T	p.Ala301Val	p.A301V	ENST00000377346	NM_005026.3	301	gCc/gTc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72861830	72861830	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			152	20	318	0	ENST00000325599.8:c.1052T>C	p.Leu351Ser	p.L351S	ENST00000325599	NM_018130.2	351	tTg/tCg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483979	88483979	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			76	31	278	0	ENST00000360948.2:c.1591C>T	p.Gln531Ter	p.Q531*	ENST00000360948	NM_001012338.2	531	Cag/Tag																																																																															
SUFU	51684	MSKCC	GRCh37	10	104359283	104359283	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			258	56	270	0	ENST00000369902.3:c.1004T>G	p.Leu335Arg	p.L335R	ENST00000369902	NM_016169.3	335	cTc/cGc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557681	21557681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			129	60	381	0	ENST00000382592.4:c.2164G>A	p.Glu722Lys	p.E722K	ENST00000382592	NM_014572.2	722	Gag/Aag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64128969	64128969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			335	41	397	0	ENST00000334205.4:c.599C>T	p.Thr200Ile	p.T200I	ENST00000334205	NM_003942.2	200	aCc/aTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431682	49431682	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			272	42	440	0	ENST00000301067.7:c.9457G>T	p.Gly3153Trp	p.G3153W	ENST00000301067	NM_003482.3	3153	Ggg/Tgg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562388	21562388	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752338072		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			87	24	318	0	ENST00000382592.4:c.1531C>T	p.Arg511Trp	p.R511W	ENST00000382592	NM_014572.2	511	Cgg/Tgg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348049	348049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			312	20	372	0	ENST00000262320.3:c.1457C>T	p.Ser486Leu	p.S486L	ENST00000262320	NM_003502.3	486	tCg/tTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1272346	1272346	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			131	16	271	0	ENST00000310581.5:c.2336A>G	p.His779Arg	p.H779R	ENST00000310581	NM_198253.2	779	cAc/cGc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610205	10610205	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs539818436		P-0025952-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			270	146	313	0	ENST00000171111.5:c.505C>T	p.Arg169Cys	p.R169C	ENST00000171111	NM_203500.1	169	Cgt/Tgt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs879499034		P-0037751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	181	441	1	ENST00000250448.2:c.798C>A	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578509	7578509	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519978		P-0065121-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	13	497	0	ENST00000269305.4:c.421T>G	p.Cys141Gly	p.C141G	ENST00000269305	NM_001126112.2	141	Tgc/Ggc																																																																															
SYK	6850	MSKCC	GRCh37	9	93606568	93606568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065121-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	23	383	0	ENST00000375746.1:c.388G>A	p.Glu130Lys	p.E130K	ENST00000375746	NM_001174167.1	130	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TC			P-0065121-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	36	355	0	ENST00000256078.4:c.180_181inv	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggGAaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971022	21971023	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGG			P-0065121-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	28	454	0	ENST00000304494.5:c.333_335dup	p.Arg112dup	p.R112dup	ENST00000304494	NM_000077.4	112	cgt/cgCCGt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0080965-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			238	63	436	1				ENST00000310581	NM_198253.2																																																																																	
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080965-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			165	328	387	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986643	36986644	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0080965-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			282	97	556	0	ENST00000354822.5:c.1045dup	p.His349ProfsTer90	p.H349Pfs*90	ENST00000354822	NM_001079668.2	349	cac/cCac																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987020	36987021	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0080965-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			279	101	411	0	ENST00000354822.5:c.668dup	p.His223GlnfsTer216	p.H223Qfs*216	ENST00000354822	NM_001079668.2	223	cac/caAc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11032340	11032340	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0080965-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	58	548	0	ENST00000327064.4:c.1734T>A	p.Tyr578Ter	p.Y578*	ENST00000327064	NM_199141.1	578	taT/taA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0080969-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	185	451	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0080969-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			534	340	416	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
RB1	5925	MSKCC	GRCh37	13	48954315	48954317	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0081006-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	225	257	0	ENST00000267163.4:c.1439_1441del	p.Asn480del	p.N480del	ENST00000267163	NM_000321.2	479	gACAac/gac																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38173513	38173513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081006-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	282	271	0	ENST00000317025.8:c.1903C>T	p.Arg635Cys	p.R635C	ENST00000317025	NM_023034.1	635	Cgc/Tgc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15978986	15978993	+	frameshift_variant	Frame_Shift_Del	DEL	GTATGCCA	GTATGCCA	-			P-0081006-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			58	259	322	0	ENST00000268712.3:c.3525_3532del	p.Gly1176AsnfsTer15	p.G1176Nfs*15	ENST00000268712	NM_006311.3	1175	acTGGCATACca/acca																																																																															
TP53	7157	MSKCC	GRCh37	17	7573922	7573938	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCACCTGGAGTGAGCC	CTCACCTGGAGTGAGCC	-			P-0081006-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			61	221	299	0	ENST00000269305.4:c.1089_1100+5del		p.X363_splice	ENST00000269305	NM_001126112.2	363																																																																																
TP53	7157	MSKCC	GRCh37	17	7579329	7579329	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912658		P-0081100-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	102	334	0	ENST00000269305.4:c.358A>G	p.Lys120Glu	p.K120E	ENST00000269305	NM_001126112.2	120	Aag/Gag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060845	38060845	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081100-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	124	327	0	ENST00000250448.2:c.1144del	p.His382ThrfsTer7	p.H382Tfs*7	ENST00000250448	NM_004496.3	382	Cac/ac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600006	10600006	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081189-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			675	74	531	0	ENST00000171111.5:c.1570G>T	p.Gly524Cys	p.G524C	ENST00000171111	NM_203500.1	524	Ggc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221996	1221996	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs376280361		P-0081189-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			434	50	394	0	ENST00000326873.7:c.911G>C	p.Arg304Pro	p.R304P	ENST00000326873	NM_000455.4	304	cGg/cCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081189-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			473	56	319	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2206797	2206797	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0081189-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			507	50	414	0	ENST00000398665.3:c.856+1G>T		p.X286_splice	ENST00000398665	NM_032482.2	286																																																																																
CDC73	79577	MSKCC	GRCh37	1	193111198	193111198	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0081189-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			678	46	478	0	ENST00000367435.3:c.729+2T>C		p.X243_splice	ENST00000367435	NM_024529.4	243																																																																																
ZNRF3	84133	MSKCC	GRCh37	22	29279875	29279912	+	frameshift_variant	Frame_Shift_Del	DEL	CTCGGGCTGCTGCTGGCGGCCGCGGGGCCCGGCGCGGC	CTCGGGCTGCTGCTGGCGGCCGCGGGGCCCGGCGCGGC	-			P-0081189-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			177	36	158	0	ENST00000544604.2:c.121_158del	p.Leu41AlafsTer55	p.L41Afs*55	ENST00000544604	NM_001206998.1	41	CTCGGGCTGCTGCTGGCGGCCGCGGGGCCCGGCGCGGCg/g																																																																															
STK11	6794	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs878853247		P-0081382-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			72	501	524	0	ENST00000326873.7:c.709G>T	p.Asp237Tyr	p.D237Y	ENST00000326873	NM_000455.4	237	Gac/Tac																																																																															
CIC	23152	MSKCC	GRCh37	19	42794841	42794841	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0081382-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			644	462	580	0	ENST00000575354.2:c.1921G>T	p.Glu641Ter	p.E641*	ENST00000575354	NM_015125.3	641	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602662	10602662	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1457377196		P-0081382-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			90	383	630	0	ENST00000171111.5:c.916G>T	p.Glu306Ter	p.E306*	ENST00000171111	NM_203500.1	306	Gag/Tag																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252955	36252955	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081382-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			450	163	507	0	ENST00000300305.3:c.407A>G	p.Asn136Ser	p.N136S	ENST00000300305		136	aAt/aGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510225	187510225	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081382-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			297	397	537	0	ENST00000441802.2:c.13288G>T	p.Asp4430Tyr	p.D4430Y	ENST00000441802	NM_005245.3	4430	Gac/Tac																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712535	43712535	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756376679		P-0081382-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			321	68	597	0	ENST00000382044.4:c.4649C>T	p.Thr1550Met	p.T1550M	ENST00000382044	NM_001141980.1	1550	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0081382-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			107	234	353	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180052965	180052965	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081382-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			805	185	632	0	ENST00000261937.6:c.1325C>A	p.Ala442Asp	p.A442D	ENST00000261937	NM_182925.4	442	gCc/gAc																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47598996	47598996	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0081382-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			539	86	593	0	ENST00000395288.2:c.556T>G	p.Leu186Val	p.L186V	ENST00000395288	NM_016506.5	186	Ttg/Gtg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630447	187630447	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0081382-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			607	306	638	0	ENST00000441802.2:c.535G>T	p.Gly179Ter	p.G179*	ENST00000441802	NM_005245.3	179	Gga/Tga																																																																															
JAK2	3717	MSKCC	GRCh37	9	5072493	5072494	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0081382-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			129	118	415	0	ENST00000381652.3:c.1644dup	p.Glu549Ter	p.E549*	ENST00000381652	NM_004972.3	548	aat/aaTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500865	8500865	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs748586269		P-0081414-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	73	453	0	ENST00000356435.5:c.2017C>A	p.Leu673Ile	p.L673I	ENST00000356435		673	Ctt/Att																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16097823	16097823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081414-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	56	361	0	ENST00000268712.3:c.61C>T	p.Pro21Ser	p.P21S	ENST00000268712	NM_006311.3	21	Cct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0081531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	187	295	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858738	9858738	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149698593		P-0081531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	161	397	0	ENST00000330684.3:c.2663C>T	p.Thr888Met	p.T888M	ENST00000330684	NM_001134407.1	888	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0081531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	231	391	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0081531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	68	205	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542882	187542882	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0081531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	91	333	0	ENST00000441802.2:c.4858A>T	p.Lys1620Ter	p.K1620*	ENST00000441802	NM_005245.3	1620	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175352	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0081531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	70	343	0	ENST00000257430.4:c.4062_4063del	p.Ser1355PhefsTer19	p.S1355Ffs*19	ENST00000257430	NM_000038.5	1354	TTt/t																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738793	145738793	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs758790200		P-0081531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	270	615	0	ENST00000428558.2:c.2272C>T	p.Arg758Ter	p.R758*	ENST00000428558	NM_004260.3	758	Cga/Tga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678344	88678344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1205263292		P-0081531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	94	389	0	ENST00000360948.2:c.1192G>A	p.Glu398Lys	p.E398K	ENST00000360948	NM_001012338.2	398	Gag/Aag																																																																															
TEK	7010	MSKCC	GRCh37	9	27190670	27190670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	137	339	0	ENST00000380036.4:c.1471G>A	p.Ala491Thr	p.A491T	ENST00000380036	NM_000459.3	491	Gct/Act																																																																															
PHF6	84295	MSKCC	GRCh37	X	133512031	133512032	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	TAG			P-0081531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	20	247	0	ENST00000332070.3:c.139-3_139-1dup		p.X47_splice	ENST00000332070	NM_032458.2	47																																																																																
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0081534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	606	570	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0081534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	94	368	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	39	533	0	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942195	71942195	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	97	552	1	ENST00000298229.2:c.1463del	p.Gly488AlafsTer43	p.G488Afs*43	ENST00000298229	NM_001567.3	487	Ggg/gg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			798	49	641	5	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28622419	28622419	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776699712		P-0081535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	42	473	0	ENST00000241453.7:c.1198G>A	p.Gly400Arg	p.G400R	ENST00000241453	NM_004119.2	400	Gga/Aga																																																																															
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	44	530	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																															
NF1	4763	MSKCC	GRCh37	17	29562747	29562747	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137854556		P-0081535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	26	398	0	ENST00000358273.4:c.3827G>A	p.Arg1276Gln	p.R1276Q	ENST00000358273	NM_001042492.2	1276	cGa/cAa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688708	47688708	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs985933794		P-0081535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	54	445	0	ENST00000347630.2:c.592C>T	p.Arg198Trp	p.R198W	ENST00000347630	NM_001007230.1	198	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0081535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	67	594	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272238	15272238	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs760917811		P-0081535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	49	570	0	ENST00000263388.2:c.6201del	p.Lys2069ArgfsTer16	p.K2069Rfs*16	ENST00000263388	NM_000435.2	2067	ccC/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214639	36214639	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765234257		P-0081535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	37	541	0	ENST00000222270.7:c.3065C>T	p.Thr1022Met	p.T1022M	ENST00000222270	NM_014727.1	1022	aCg/aTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227657	36227657	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1261171231		P-0081535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	44	521	0	ENST00000222270.7:c.7226G>A	p.Arg2409Gln	p.R2409Q	ENST00000222270	NM_014727.1	2409	cGg/cAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541475	187541475	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs76613365		P-0081535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	43	562	0	ENST00000441802.2:c.6265G>A	p.Val2089Ile	p.V2089I	ENST00000441802	NM_005245.3	2089	Gtt/Att																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0081535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	55	600	2	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
EZH2	2146	MSKCC	GRCh37	7	148523605	148523605	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587778304		P-0081535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	39	448	1	ENST00000320356.2:c.848C>T	p.Thr283Met	p.T283M	ENST00000320356	NM_004456.4	283	aCg/aTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2949727	2949727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	90	390	0	ENST00000396946.4:c.3217G>A	p.Val1073Met	p.V1073M	ENST00000396946	NM_032415.4	1073	Gtg/Atg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135804238	135804238	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773784532		P-0081535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			709	44	607	0	ENST00000298552.3:c.22G>A	p.Gly8Arg	p.G8R	ENST00000298552	NM_001162426.1	8	Ggg/Agg																																																																															
SDHC	6391	MSKCC	GRCh37	1	161293429	161293429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	44	378	0	ENST00000367975.2:c.46G>A	p.Ala16Thr	p.A16T	ENST00000367975	NM_003001.3	16	Gcc/Acc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65316494	65316494	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	48	408	0	ENST00000342505.4:c.1748T>C	p.Leu583Pro	p.L583P	ENST00000342505	NM_002227.2	583	cTg/cCg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117590	70117590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	102	610	0	ENST00000245479.2:c.58G>A	p.Gly20Ser	p.G20S	ENST00000245479	NM_000346.3	20	Ggc/Agc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158594950	158594950	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0081535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	50	493	0	ENST00000263640.3:c.1395+2T>C		p.X465_splice	ENST00000263640	NM_001105.4	465																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212530120	212530121	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0081535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	45	514	0	ENST00000342788.4:c.1798dup	p.Ala600GlyfsTer10	p.A600Gfs*10	ENST00000342788	NM_005235.2	600	gca/gGca																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747864	41747864	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	52	398	0	ENST00000226382.2:c.905A>G	p.Asn302Ser	p.N302S	ENST00000226382	NM_003924.3	302	aAc/aGc																																																																															
MED12	9968	MSKCC	GRCh37	X	70342603	70342603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	51	261	0	ENST00000374080.3:c.1364G>A	p.Arg455Gln	p.R455Q	ENST00000374080		455	cGg/cAg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12633229	12633229	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs368807126		P-0081540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	103	442	0	ENST00000251849.4:c.1171A>T	p.Arg391Trp	p.R391W	ENST00000251849	NM_002880.3	391	Agg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0081540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	87	422	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
ALK	238	MSKCC	GRCh37	2	29551240	29551240	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55706535		P-0081540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			709	83	580	0	ENST00000389048.3:c.1390G>A	p.Gly464Arg	p.G464R	ENST00000389048	NM_004304.4	464	Gga/Aga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602863	10602863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	106	555	0	ENST00000171111.5:c.715G>T	p.Val239Leu	p.V239L	ENST00000171111	NM_203500.1	239	Gtg/Ttg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9543658	9543658	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	66	444	1	ENST00000353224.5:c.1496G>T	p.Arg499Leu	p.R499L	ENST00000353224	NM_177990.2	499	cGg/cTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476331	88476331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	52	506	0	ENST00000360948.2:c.1801G>T	p.Val601Phe	p.V601F	ENST00000360948	NM_001012338.2	601	Gtc/Ttc																																																																															
TET1	80312	MSKCC	GRCh37	10	70451245	70451245	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			783	88	603	0	ENST00000373644.4:c.6085G>T	p.Ala2029Ser	p.A2029S	ENST00000373644	NM_030625.2	2029	Gct/Tct																																																																															
RECQL	5965	MSKCC	GRCh37	12	21630876	21630876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	82	507	0	ENST00000421138.2:c.728G>T	p.Arg243Leu	p.R243L	ENST00000421138		243	cGg/cTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29422328	29422328	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1060500252		P-0081540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	59	316	0	ENST00000358273.4:c.1A>G	p.Met1?	p.M1?	ENST00000358273	NM_001042492.2	1	Atg/Gtg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109863	115109864	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0081540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	66	533	0	ENST00000257566.3:c.2014_2015delinsCT	p.Gly672Leu	p.G672L	ENST00000257566	NM_016569.3	672	GGc/CTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467584	66467584	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	104	503	0	ENST00000273854.3:c.685T>C	p.Tyr229His	p.Y229H	ENST00000273854	NM_004439.5	229	Tac/Cac																																																																															
CUL3	8452	MSKCC	GRCh37	2	225379329	225379329	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0081540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	39	350	0	ENST00000264414.4:c.539G>C	p.Arg180Thr	p.R180T	ENST00000264414	NM_003590.4	180	aGa/aCa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931412	131931412	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	90	413	0	ENST00000265335.6:c.2117G>T	p.Arg706Leu	p.R706L	ENST00000265335		706	cGa/cTa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355855	73355855	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	69	446	0	ENST00000377767.4:c.116G>T	p.Cys39Phe	p.C39F	ENST00000377767	NM_014953.3	39	tGt/tTt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675438	30675438	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780670990		P-0081551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	118	349	0	ENST00000376406.3:c.2918C>T	p.Ala973Val	p.A973V	ENST00000376406	NM_014641.2	973	gCg/gTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68844112	68844112	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs878854694		P-0081551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	51	275	0	ENST00000261769.5:c.700G>A	p.Ala234Thr	p.A234T	ENST00000261769	NM_004360.3	234	Gct/Act																																																																															
JAK1	3716	MSKCC	GRCh37	1	65332884	65332884	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	28	257	0	ENST00000342505.4:c.655C>T	p.Arg219Ter	p.R219*	ENST00000342505	NM_002227.2	219	Cga/Tga																																																																															
BLM	641	MSKCC	GRCh37	15	91292815	91292815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	30	327	0	ENST00000355112.3:c.317C>T	p.Ser106Leu	p.S106L	ENST00000355112	NM_000057.2	106	tCa/tTa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T	rs730881673		P-0081609-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			89	364	462	0	ENST00000304494.5:c.131dup	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs863224683		P-0081609-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			98	464	528	0	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc																																																																															
FH	2271	MSKCC	GRCh37	1	241683007	241683007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081609-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			83	362	371	0	ENST00000366560.3:c.16C>T	p.Arg6Trp	p.R6W	ENST00000366560	NM_000143.3	6	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578450	7578450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081609-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			105	511	548	0	ENST00000269305.4:c.480G>T	p.Met160Ile	p.M160I	ENST00000269305	NM_001126112.2	160	atG/atT																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467745	50467745	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0081609-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			429	387	483	0	ENST00000331340.3:c.980T>A	p.Leu327Gln	p.L327Q	ENST00000331340	NM_006060.4	327	cTg/cAg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679150	88679150	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081609-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			375	288	377	0	ENST00000360948.2:c.887G>C	p.Ser296Thr	p.S296T	ENST00000360948	NM_001012338.2	296	aGt/aCt																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21351244	21351244	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081609-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			76	517	487	0	ENST00000215739.8:c.2395C>T	p.Gln799Ter	p.Q799*	ENST00000215739	NM_006767.3	799	Cag/Tag																																																																															
TRIP13	9319	MSKCC	GRCh37	5	908102	908102	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0081609-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			585	298	411	0	ENST00000166345.3:c.673-1G>A		p.X225_splice	ENST00000166345	NM_004237.3	225																																																																																
ATM	472	MSKCC	GRCh37	11	108199929	108199929	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs28904921		P-0081689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	93	299	0	ENST00000278616.4:c.7271T>G	p.Val2424Gly	p.V2424G	ENST00000278616	NM_000051.3	2424	gTa/gGa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447401	49447402	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-			P-0081689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	55	428	0	ENST00000301067.7:c.696_697del	p.Cys232Ter	p.C232*	ENST00000301067	NM_003482.3	232	tgTGag/tgag																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222323	6222323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	22	411	0	ENST00000252674.7:c.919G>A	p.Gly307Arg	p.G307R	ENST00000252674	NM_005934.3	307	Ggg/Agg																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23539110	23539110	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs763879828		P-0081689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	24	445	0	ENST00000380871.4:c.329C>A	p.Ser110Ter	p.S110*	ENST00000380871	NM_006167.3	110	tCa/tAa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25990476	25990476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081703-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	65	335	0	ENST00000435504.4:c.751C>T	p.Gln251Ter	p.Q251*	ENST00000435504		251	Cag/Tag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645330	67645330	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081703-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	138	417	0	ENST00000264010.4:c.595C>G	p.Pro199Ala	p.P199A	ENST00000264010	NM_006565.3	199	Cca/Gca																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073902	8073902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081703-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	36	356	0	ENST00000377482.5:c.757C>T	p.Pro253Ser	p.P253S	ENST00000377482	NM_018948.3	253	Cca/Tca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27058039	27058039	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	151	588	0	ENST00000324856.7:c.1747C>T	p.Gln583Ter	p.Q583*	ENST00000324856	NM_006015.4	583	Cag/Tag																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870779	12870779	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	101	422	0	ENST00000228872.4:c.8del	p.Asn3ThrfsTer39	p.N3Tfs*39	ENST00000228872	NM_004064.3	2	tcA/tc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473790	67473790	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0081718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	87	297	0	ENST00000327367.4:c.870C>G	p.Ile290Met	p.I290M	ENST00000327367	NM_005902.3	290	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0081718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	134	440	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578223	7578223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	149	478	0	ENST00000269305.4:c.626G>A	p.Arg209Lys	p.R209K	ENST00000269305	NM_001126112.2	209	aGa/aAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0081718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	92	216	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDK6	1021	MSKCC	GRCh37	7	92404064	92404064	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	60	363	0	ENST00000265734.4:c.315G>C	p.Leu105Phe	p.L105F	ENST00000265734	NM_001259.6	105	ttG/ttC																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270475	98270475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	108	274	0	ENST00000331920.6:c.169G>A	p.Asp57Asn	p.D57N	ENST00000331920	NM_000264.3	57	Gac/Aac																																																																															
ATM	472	MSKCC	GRCh37	11	108138044	108138044	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0081718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	109	296	0	ENST00000278616.4:c.2613A>T	p.Glu871Asp	p.E871D	ENST00000278616	NM_000051.3	871	gaA/gaT																																																																															
POLE	5426	MSKCC	GRCh37	12	133202325	133202325	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780307061		P-0081718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	68	386	0	ENST00000320574.5:c.6563C>T	p.Ser2188Phe	p.S2188F	ENST00000320574	NM_006231.2	2188	tCc/tTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49423260	49423260	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0081718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	57	371	0	ENST00000301067.7:c.14000-1G>C		p.X4667_splice	ENST00000301067	NM_003482.3	4667																																																																																
STAT5B	6777	MSKCC	GRCh37	17	40371825	40371825	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	16	279	0	ENST00000293328.3:c.586G>C	p.Glu196Gln	p.E196Q	ENST00000293328	NM_012448.3	196	Gag/Cag																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740723	58740723	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	134	434	0	ENST00000305921.3:c.1628C>G	p.Ser543Cys	p.S543C	ENST00000305921	NM_003620.3	543	tCt/tGt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467185	25467185	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	208	417	0	ENST00000264709.3:c.1690G>C	p.Asp564His	p.D564H	ENST00000264709	NM_175629.2	564	Gac/Cac																																																																															
PPARG	5468	MSKCC	GRCh37	3	12421223	12421223	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	58	326	0	ENST00000287820.6:c.103G>C	p.Glu35Gln	p.E35Q	ENST00000287820	NM_015869.4	35	Gag/Cag																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665050	138665077	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCCTCCGGCCCCGAAGAGCCCCTTGC	GCGCCTCCGGCCCCGAAGAGCCCCTTGC	-			P-0081718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	165	275	0	ENST00000330315.3:c.488_515del	p.Gly163AlafsTer99	p.G163Afs*99	ENST00000330315	NM_023067.3	163	gGCAAGGGGCTCTTCGGGGCCGGAGGCGCc/gc																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114796	73114796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			4	22	9	0	ENST00000356692.5:c.1177G>A	p.Glu393Lys	p.E393K	ENST00000356692		393	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112136997	112136997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	48	295	0	ENST00000257430.4:c.751G>A	p.Glu251Lys	p.E251K	ENST00000257430	NM_000038.5	251	Gaa/Aaa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528797	157528797	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	128	396	0	ENST00000346085.5:c.6522G>T	p.Gln2174His	p.Q2174H	ENST00000346085	NM_020732.3	2174	caG/caT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508408	106508408	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	43	380	0	ENST00000359195.3:c.402G>C	p.Gln134His	p.Q134H	ENST00000359195	NM_002649.2	134	caG/caC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55238887	55238887	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0081718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	64	225	0	ENST00000275493.2:c.1900G>T	p.Glu634Ter	p.E634*	ENST00000275493	NM_005228.3	634	Gaa/Taa																																																																															
MED12	9968	MSKCC	GRCh37	X	70345204	70345204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	93	386	0	ENST00000374080.3:c.2230G>A	p.Glu744Lys	p.E744K	ENST00000374080		744	Gag/Aag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0081719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	49	463	0	ENST00000342988.3:c.1610A>T	p.Asp537Val	p.D537V	ENST00000342988	NM_005359.5	537	gAc/gTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101609	27101609	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	39	562	0	ENST00000324856.7:c.4891C>T	p.Gln1631Ter	p.Q1631*	ENST00000324856	NM_006015.4	1631	Cag/Tag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30108079	30108079	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754654624		P-0081719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	19	227	0	ENST00000331968.5:c.728G>A	p.Arg243Gln	p.R243Q	ENST00000331968	NM_002742.2	243	cGa/cAa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439972	56439972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	50	445	0	ENST00000407977.2:c.620G>A	p.Gly207Asp	p.G207D	ENST00000407977		207	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	41	344	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845717	151845717	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	74	546	0	ENST00000262189.6:c.13295G>C	p.Cys4432Ser	p.C4432S	ENST00000262189	NM_170606.2	4432	tGc/tCc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374278	138374278	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	41	440	0	ENST00000289153.2:c.3166A>G	p.Lys1056Glu	p.K1056E	ENST00000289153	NM_006219.2	1056	Aaa/Gaa																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2029036	2029036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	36	557	0	ENST00000349721.2:c.14C>T	p.Thr5Ile	p.T5I	ENST00000349721	NM_003070.3	5	aCa/aTa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44923045	44923048	+	frameshift_variant	Frame_Shift_Del	DEL	CTAT	CTAT	-			P-0081721-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	13	190	0	ENST00000377967.4:c.1909_1912del	p.Ser637ThrfsTer53	p.S637Tfs*53	ENST00000377967	NM_021140.2	636	CTATct/ct																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8338987	8338987	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081721-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	10	304	0	ENST00000356435.5:c.5314G>T	p.Asp1772Tyr	p.D1772Y	ENST00000356435		1772	Gat/Tat																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15964994	15964994	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081721-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	13	399	0	ENST00000268712.3:c.5602C>T	p.Gln1868Ter	p.Q1868*	ENST00000268712	NM_006311.3	1868	Cag/Tag																																																																															
MED12	9968	MSKCC	GRCh37	X	70348559	70348559	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081721-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	12	171	0	ENST00000374080.3:c.3466C>G	p.Leu1156Val	p.L1156V	ENST00000374080		1156	Ctt/Gtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs764146326		P-0081749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	120	558	0	ENST00000269305.4:c.841G>T	p.Asp281Tyr	p.D281Y	ENST00000269305	NM_001126112.2	281	Gac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112174884	112174885	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0081749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	66	568	0	ENST00000257430.4:c.3596dup	p.Ser1200GlufsTer8	p.S1200Efs*8	ENST00000257430	NM_000038.5	1198	tca/tcAa																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458321	12458321	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	63	540	0	ENST00000287820.6:c.938G>T	p.Cys313Phe	p.C313F	ENST00000287820	NM_015869.4	313	tGc/tTc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59934534	59934536	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0081749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	50	404	0	ENST00000259008.2:c.262_264del	p.Cys88del	p.C88del	ENST00000259008	NM_032043.2	88	TGT/-																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604735	48604740	+	inframe_deletion	In_Frame_Del	DEL	AGAAAC	AGAAAC	-			P-0081749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	26	534	0	ENST00000342988.3:c.1558_1563del	p.Glu520_Thr521del	p.E520_T521del	ENST00000342988	NM_005359.5	519	aaAGAAACa/aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	56	320	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374938	45374938	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0081750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	101	422	0	ENST00000262160.6:c.905T>G	p.Phe302Cys	p.F302C	ENST00000262160	NM_005901.5	302	tTt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577129	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	CAA	CAA	-			P-0081750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	125	491	0	ENST00000269305.4:c.809_811del	p.Phe270_Glu271delinsTer	p.F270_E271delins*	ENST00000269305	NM_001126112.2	270	tTTGag/tag																																																																															
TET2	54790	MSKCC	GRCh37	4	106158509	106158509	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs772634266		P-0081802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	119	364	0	ENST00000380013.4:c.3409+1G>A		p.X1137_splice	ENST00000380013	NM_001127208.2	1137																																																																																
TP53	7157	MSKCC	GRCh37	17	7579390	7579393	+	frameshift_variant	Frame_Shift_Del	DEL	GGAA	GGAA	-	rs730882015		P-0081802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	166	477	0	ENST00000269305.4:c.294_297del	p.Ser99ArgfsTer23	p.S99Rfs*23	ENST00000269305	NM_001126112.2	98	ccTTCC/cc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468020	50468020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	119	471	0	ENST00000331340.3:c.1255G>A	p.Ala419Thr	p.A419T	ENST00000331340	NM_006060.4	419	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7572932	7572932	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	129	379	0	ENST00000269305.4:c.1177G>C	p.Asp393His	p.D393H	ENST00000269305	NM_001126112.2	393	Gac/Cac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	72	220	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880887	134880887	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs777709674		P-0081802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	81	329	0	ENST00000398015.3:c.1450G>T	p.Ala484Ser	p.A484S	ENST00000398015	NM_004441.4	484	Gcc/Tcc																																																																															
EP300	2033	MSKCC	GRCh37	22	41562656	41562656	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0081802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	25	228	0	ENST00000263253.7:c.3860A>C	p.Lys1287Thr	p.K1287T	ENST00000263253	NM_001429.3	1287	aAg/aCg																																																																															
TP63	8626	MSKCC	GRCh37	3	189586494	189586494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	160	356	0	ENST00000264731.3:c.1118G>A	p.Gly373Asp	p.G373D	ENST00000264731	NM_003722.4	373	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0064476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	169	608	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593417	48593417	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0064476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	190	495	0	ENST00000342988.3:c.1168G>T	p.Glu390Ter	p.E390*	ENST00000342988	NM_005359.5	390	Gaa/Taa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482552	56482552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	538	596	0	ENST00000267101.3:c.1009G>A	p.Gly337Arg	p.G337R	ENST00000267101	NM_001982.3	337	Ggg/Agg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411276	63411276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	357	442	1	ENST00000330258.3:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000330258	NM_152424.3	631	Cga/Tga																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748120	41748120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759792321		P-0064476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	94	517	0	ENST00000226382.2:c.649G>A	p.Gly217Arg	p.G217R	ENST00000226382	NM_003924.3	217	Ggg/Agg																																																																															
ATM	472	MSKCC	GRCh37	11	108196144	108196144	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs879254132		P-0064476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	143	437	0	ENST00000278616.4:c.6680G>A	p.Arg2227His	p.R2227H	ENST00000278616	NM_000051.3	2227	cGc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419987	41419987	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376239850		P-0064476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			758	177	696	0	ENST00000373198.4:c.334C>T	p.Arg112Cys	p.R112C	ENST00000373198	NM_133170.3	112	Cgt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108224499	108224499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	135	503	0	ENST00000278616.4:c.8678C>T	p.Ala2893Val	p.A2893V	ENST00000278616	NM_000051.3	2893	gCt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0064476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	273	363	2	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112173708	112173709	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0064476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	116	605	0	ENST00000257430.4:c.2417_2418del	p.His806ArgfsTer2	p.H806Rfs*2	ENST00000257430	NM_000038.5	806	cAT/c																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10292740	10292740	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	106	482	0	ENST00000340748.4:c.94G>T	p.Glu32Ter	p.E32*	ENST00000340748		32	Gaa/Taa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs763804037		P-0079954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	26	503	0	ENST00000304494.5:c.143C>G	p.Pro48Arg	p.P48R	ENST00000304494	NM_000077.4	48	cCg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0079954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	10	348	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578545	7578574	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGGGGAGTACTGTAGGAAGAGGAAGGAGA	CAGGGGAGTACTGTAGGAAGAGGAAGGAGA	-			P-0079954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	34	475	0	ENST00000269305.4:c.376-20_385del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0081613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	343	554	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098962	178098962	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	611	467	0	ENST00000397062.3:c.83T>C	p.Ile28Thr	p.I28T	ENST00000397062	NM_006164.4	28	aTa/aCa																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805642	46805642	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140492479		P-0081613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	272	575	0	ENST00000290295.7:c.314C>T	p.Thr105Ile	p.T105I	ENST00000290295	NM_006361.5	105	aCc/aTc																																																																															
MDM2	4193	MSKCC	GRCh37	12	69202987	69202987	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0081613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	251	393	0	ENST00000462284.1:c.15-1G>T		p.X5_splice	ENST00000462284	NM_002392.5	5																																																																																
SETD2	29072	MSKCC	GRCh37	3	47129738	47129738	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0081613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	260	388	0	ENST00000409792.3:c.5143-1G>A		p.X1715_splice	ENST00000409792	NM_014159.6	1715																																																																																
DNMT1	1786	MSKCC	GRCh37	19	10249115	10249115	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0081613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	97	417	0	ENST00000340748.4:c.4067G>T	p.Arg1356Met	p.R1356M	ENST00000340748		1356	aGg/aTg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180999	32180999	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0081613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	201	421	0	ENST00000375023.3:c.2351A>T	p.Asn784Ile	p.N784I	ENST00000375023	NM_004557.3	784	aAc/aTc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244409	46244409	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	147	596	0	ENST00000334344.6:c.2503C>G	p.Gln835Glu	p.Q835E	ENST00000334344	NM_152641.2	835	Cag/Gag																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821584	32821584	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	116	407	0	ENST00000354258.4:c.10C>A	p.Leu4Ile	p.L4I	ENST00000354258	NM_000593.5	4	Ctt/Att																																																																															
FLCN	201163	MSKCC	GRCh37	17	17118401	17118401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	339	562	0	ENST00000285071.4:c.1436G>T	p.Gly479Val	p.G479V	ENST00000285071	NM_144997.5	479	gGc/gTc																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612905	228612905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1351	372	638	0	ENST00000366696.1:c.122G>A	p.Arg41His	p.R41H	ENST00000366696	NM_003493.2	41	cGc/cAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28891713	28891713	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1299569579		P-0081613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	187	515	0	ENST00000282397.4:c.3308T>C	p.Val1103Ala	p.V1103A	ENST00000282397	NM_002019.4	1103	gTa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882005		P-0081619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	90	429	0	ENST00000269305.4:c.713G>C	p.Cys238Ser	p.C238S	ENST00000269305	NM_001126112.2	238	tGt/tCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0081619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	79	378	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729942	41729942	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	79	541	0	ENST00000242208.4:c.587G>C	p.Gly196Ala	p.G196A	ENST00000242208	NM_002192.2	196	gGc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0081652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	84	499	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0081652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	325	252	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10284565	10284565	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	15	402	0	ENST00000340748.4:c.617G>C	p.Arg206Thr	p.R206T	ENST00000340748		206	aGa/aCa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61706055	61706056	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0081652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	21	523	0	ENST00000401558.2:c.3115_3116del	p.Glu1039AsnfsTer7	p.E1039Nfs*7	ENST00000401558	NM_003400.3	1039	GAa/a																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851054	63851054	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs117757404		P-0081655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	39	627	0	ENST00000279873.7:c.1832C>T	p.Thr611Met	p.T611M	ENST00000279873	NM_032199.2	611	aCg/aTg																																																																															
AXL	558	MSKCC	GRCh37	19	41743906	41743906	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0081655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	34	668	0	ENST00000301178.4:c.841G>T	p.Glu281Ter	p.E281*	ENST00000301178	NM_021913.4	281	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0081656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	68	448	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562482	21562483	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGGCGGGGGCG	rs550642106		P-0081656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	69	458	70	ENST00000382592.4:c.1425_1436dup	p.Pro477_Ala480dup	p.P477_A480dup	ENST00000382592	NM_014572.2	477	ccg/ccCGCCCCCGCCCCg																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032057	26032057	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			917	102	822	0	ENST00000244661.2:c.232G>C	p.Asp78His	p.D78H	ENST00000244661	NM_003537.3	78	Gac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577153	7577154	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CC	CC	AT			P-0081656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	101	548	0	ENST00000269305.4:c.784_785delinsAT	p.Gly262Ile	p.G262I	ENST00000269305	NM_001126112.2	262	GGt/ATt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18691113	18691113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	64	520	0	ENST00000266497.5:c.3224C>T	p.Thr1075Ile	p.T1075I	ENST00000266497		1075	aCt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0081658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	173	353	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202805	16202805	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0081658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	105	366	0	ENST00000375759.3:c.513A>T	p.Arg171Ser	p.R171S	ENST00000375759	NM_015001.2	171	agA/agT																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15967475	15967475	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	160	346	0	ENST00000268712.3:c.5128G>C	p.Ala1710Pro	p.A1710P	ENST00000268712	NM_006311.3	1710	Gca/Cca																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0081660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	71	355	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0081660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	99	357	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	54	347	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																																																															
WT1	7490	MSKCC	GRCh37	11	32456566	32456566	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1311557029		P-0081660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	23	207	0	ENST00000332351.3:c.326C>T	p.Ala109Val	p.A109V	ENST00000332351	NM_024426.4	109	gCg/gTg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204849	128204849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	59	332	0	ENST00000341105.2:c.592G>A	p.Ala198Thr	p.A198T	ENST00000341105	NM_032638.4	198	Gcg/Acg																																																																															
TERT	7015	MSKCC	GRCh37	5	1293987	1293987	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	93	370	0	ENST00000310581.5:c.1014G>T	p.Lys338Asn	p.K338N	ENST00000310581	NM_198253.2	338	aaG/aaT																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520464	176520464	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs558220864		P-0081660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	91	361	0	ENST00000292408.4:c.1309C>T	p.Arg437Cys	p.R437C	ENST00000292408	NM_213647.1	437	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	51	238	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423760	47423760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	95	405	0	ENST00000404338.3:c.1828C>T	p.Arg610Ter	p.R610*	ENST00000404338	NM_004491.4	610	Cga/Tga																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43748590	43748590	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0081660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	108	371	0	ENST00000523873.1:c.544C>T	p.His182Tyr	p.H182Y	ENST00000523873		182	Cat/Tat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55227884	55227884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	34	257	0	ENST00000275493.2:c.1351C>T	p.Arg451Cys	p.R451C	ENST00000275493	NM_005228.3	451	Cgc/Tgc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2220624	2220624	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	85	338	0	ENST00000326181.6:c.241A>G	p.Ser81Gly	p.S81G	ENST00000326181	NM_032271.2	81	Agc/Ggc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165602	118165602	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs921184290		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	154	414	0	ENST00000369448.3:c.112C>T	p.Arg38Ter	p.R38*	ENST00000369448	NM_017709.3	38	Cga/Tga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468424	120468424	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1395799589		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	132	340	0	ENST00000256646.2:c.4015G>A	p.Gly1339Arg	p.G1339R	ENST00000256646	NM_024408.3	1339	Ggg/Agg																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551677	150551679	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs587760643		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	89	344	0	ENST00000369026.2:c.328_330del	p.Glu110del	p.E110del	ENST00000369026	NM_021960.4	110	GAG/-																																																																															
NADK	65220	MSKCC	GRCh37	1	1688568	1688568	+	intron_variant	Intron	DEL	C	C	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	36	309	2	ENST00000341426.5:c.393+52del		p.*131*	ENST00000341426	NM_023018.4																																																																																	
NADK	65220	MSKCC	GRCh37	1	1688633	1688633	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749009504		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	97	250	0	ENST00000341426.5:c.380C>T	p.Thr127Met	p.T127M	ENST00000341426	NM_023018.4	127	aCg/aTg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193218952	193218952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	95	309	1	ENST00000367435.3:c.1510C>T	p.Arg504Cys	p.R504C	ENST00000367435	NM_024529.4	504	Cgt/Tgt																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429978	78429978	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	98	347	1	ENST00000370768.2:c.901del	p.Ile301TyrfsTer22	p.I301Yfs*22	ENST00000370768	NM_003902.3	301	Ata/ta																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	139	391	1	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	102	249	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
RET	5979	MSKCC	GRCh37	10	43602002	43602002	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754859905		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	158	349	0	ENST00000355710.3:c.1046C>T	p.Ala349Val	p.A349V	ENST00000355710	NM_020975.4	349	gCg/gTg																																																																															
APLNR	187	MSKCC	GRCh37	11	57004028	57004028	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	152	402	0	ENST00000257254.3:c.451G>A	p.Ala151Thr	p.A151T	ENST00000257254		151	Gca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434074	49434074	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	123	382	0	ENST00000301067.7:c.7479del	p.Phe2494SerfsTer49	p.F2494Sfs*49	ENST00000301067	NM_003482.3	2493	ggG/gg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	498235	498235	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	88	253	1	ENST00000399788.2:c.23del	p.Gly8AlafsTer58	p.G8Afs*58	ENST00000399788	NM_001042603.1	8	gGc/gc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	149	335	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	147	388	3	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435129	110435129	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	126	372	2	ENST00000375856.3:c.3272del	p.Pro1091ArgfsTer15	p.P1091Rfs*15	ENST00000375856	NM_003749.2	1091	cCg/cg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438317	110438322	+	inframe_deletion	In_Frame_Del	DEL	GTTGTT	GTTGTT	-	rs1269430357		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	46	298	1	ENST00000375856.3:c.79_84del	p.Asn27_Asn28del	p.N27_N28del	ENST00000375856	NM_003749.2	27	AACAAC/-																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240148	41240148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	78	230	0	ENST00000379561.5:c.202G>A	p.Ala68Thr	p.A68T	ENST00000379561	NM_002015.3	68	Gcc/Acc																																																																															
RB1	5925	MSKCC	GRCh37	13	48878115	48878120	+	inframe_deletion	In_Frame_Del	DEL	CCGCCG	CCGCCG	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	32	415	0	ENST00000267163.4:c.75_80del	p.Pro28_Pro29del	p.P28_P29del	ENST00000267163	NM_000321.2	23	CCGCCG/-																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712638	43712638	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374156682		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	143	349	0	ENST00000382044.4:c.4546G>A	p.Gly1516Arg	p.G1516R	ENST00000382044	NM_001141980.1	1516	Gga/Aga																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724871	43724872	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	113	371	0	ENST00000382044.4:c.3195dup	p.Asn1066GlufsTer20	p.N1066Efs*20	ENST00000382044	NM_001141980.1	1065	-/G																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	126	372	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	116	354	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645932	67645932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	146	348	0	ENST00000264010.4:c.860G>A	p.Ser287Asn	p.S287N	ENST00000264010	NM_006565.3	287	aGc/aAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68857527	68857530	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TAAG	TAAG	-	rs1415253676		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	119	276	0	ENST00000261769.5:c.2164+3_2164+6del		p.X722_splice	ENST00000261769	NM_004360.3	722																																																																																
STAT5B	6777	MSKCC	GRCh37	17	40375486	40375486	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138255473		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	192	421	0	ENST00000293328.3:c.464C>T	p.Thr155Met	p.T155M	ENST00000293328	NM_012448.3	155	aCg/aTg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453399	40453399	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs759027671		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	197	382	3	ENST00000345506.4:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000345506	NM_003152.3	366	Ccc/cc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271813	15271813	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	176	509	1	ENST00000263388.2:c.6626del	p.Pro2209ArgfsTer37	p.P2209Rfs*37	ENST00000263388	NM_000435.2	2209	cCg/cg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257571	19257571	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	55	475	0	ENST00000162023.5:c.655C>T	p.Arg219Ter	p.R219*	ENST00000162023		219	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	64	391	1	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	147	479	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	336	367	0	ENST00000575354.2:c.3743del	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	110	426	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	264	292	0	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	154	354	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332949	153332949	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	49	344	0	ENST00000281708.4:c.7C>T	p.Gln3Ter	p.Q3*	ENST00000281708	NM_033632.3	3	Cag/Tag																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801138	1801138	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	105	382	0	ENST00000260795.2:c.270del	p.Gln92SerfsTer6	p.Q92Sfs*6	ENST00000260795		89	gtG/gt																																																																															
APC	324	MSKCC	GRCh37	5	112173686	112173687	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	96	303	0	ENST00000257430.4:c.2396_2397del	p.Tyr799CysfsTer3	p.Y799Cfs*3	ENST00000257430	NM_000038.5	799	TAt/t																																																																															
APC	324	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	154	403	0	ENST00000257430.4:c.4364del	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526792	31526792	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	90	274	0	ENST00000344624.3:c.248del	p.Pro83HisfsTer25	p.P83Hfs*25	ENST00000344624		83	cCa/ca																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	116	322	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196093	138196093	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1405321250		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	191	333	0	ENST00000237289.4:c.407G>A	p.Arg136His	p.R136H	ENST00000237289	NM_001270507.1	136	cGc/cAc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202351	138202351	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	121	355	0	ENST00000237289.4:c.2274del	p.Lys759SerfsTer57	p.K759Sfs*57	ENST00000237289	NM_001270507.1	756	gaC/ga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099579	157099579	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	62	265	0	ENST00000346085.5:c.521del	p.Pro174ArgfsTer6	p.P174Rfs*6	ENST00000346085	NM_020732.3	172	gaC/ga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	156	380	2	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	121	280	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
LYN	4067	MSKCC	GRCh37	8	56922553	56922555	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	164	342	0	ENST00000519728.1:c.1425_1427del	p.Ile475del	p.I475del	ENST00000519728	NM_002350.3	475	ATT/-																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	109	350	0	ENST00000331920.6:c.3921del	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270530	98270530	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1057518664		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	74	240	1	ENST00000331920.6:c.114del	p.Leu39CysfsTer41	p.L39Cfs*41	ENST00000331920	NM_000264.3	38	ggG/gg																																																																															
AR	367	MSKCC	GRCh37	X	66766196	66766196	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772490323		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	120	201	0	ENST00000374690.3:c.1208C>T	p.Ala403Val	p.A403V	ENST00000374690	NM_000044.3	403	gCg/gTg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175927	176175927	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	60	329	0	ENST00000367669.3:c.188del	p.Gly63AlafsTer37	p.G63Afs*37	ENST00000367669	NM_022457.5	63	gGc/gc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101691	27101691	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1035870857		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	239	370	0	ENST00000324856.7:c.4973G>A	p.Arg1658Gln	p.R1658Q	ENST00000324856	NM_006015.4	1658	cGg/cAg																																																																															
CBL	867	MSKCC	GRCh37	11	119155984	119155984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	198	405	0	ENST00000264033.4:c.1649G>A	p.Arg550Gln	p.R550Q	ENST00000264033	NM_005188.3	550	cGg/cAg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127806	64127806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	132	315	0	ENST00000334205.4:c.299C>T	p.Thr100Met	p.T100M	ENST00000334205	NM_003942.2	100	aCg/aTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133256200	133256200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	120	272	0	ENST00000320574.5:c.461G>A	p.Arg154Lys	p.R154K	ENST00000320574	NM_006231.2	154	aGg/aAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829127	72829127	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	157	365	0	ENST00000268489.5:c.7454C>A	p.Pro2485Gln	p.P2485Q	ENST00000268489	NM_006885.3	2485	cCa/cAa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59886114	59886114	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1060501779		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	96	341	0	ENST00000259008.2:c.632del	p.Pro211LeufsTer63	p.P211Lfs*63	ENST00000259008	NM_032043.2	211	cCt/ct																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117951	70117951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	137	351	1	ENST00000245479.2:c.419G>A	p.Gly140Asp	p.G140D	ENST00000245479	NM_000346.3	140	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576884	7576886	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	169	410	0	ENST00000269305.4:c.960_962del	p.Lys321del	p.K321del	ENST00000269305	NM_001126112.2	320	aaGAAa/aaa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214446	5214446	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116099658		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	53	362	0	ENST00000357368.4:c.4540G>A	p.Gly1514Ser	p.G1514S	ENST00000357368	NM_002850.3	1514	Ggc/Agc																																																																															
CASP8	841	MSKCC	GRCh37	2	202150023	202150024	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	153	313	0	ENST00000358485.4:c.1469_1470del	p.Glu490AlafsTer7	p.E490Afs*7	ENST00000358485	NM_001080125.1	488	ctGAga/ctga																																																																															
MSH6	2956	MSKCC	GRCh37	2	48028030	48028031	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	111	359	0	ENST00000234420.5:c.2913dup	p.Ile972AspfsTer3	p.I972Dfs*3	ENST00000234420	NM_000179.2	970	tgg/tGgg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62319365	62319365	+	frameshift_variant,NMD_transcript_variant	Frame_Shift_Del	DEL	C	C	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	109	402	0	ENST00000482936.1:c.1560del	p.Asp521MetfsTer5	p.D521Mfs*5	ENST00000482936		519	ggC/gg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37048510	37048510	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	187	276	0	ENST00000231790.2:c.409del	p.Ala137ProfsTer23	p.A137Pfs*23	ENST00000231790	NM_000249.3	137	Gcc/cc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266131	41266133	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	141	359	0	ENST00000349496.5:c.130_132del	p.Pro44del	p.P44del	ENST00000349496	NM_001904.3	43	gCTCct/gct																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197114	26197114	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	40	467	0	ENST00000356476.2:c.365C>A	p.Pro122His	p.P122H	ENST00000356476		122	cCc/cAc																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225422	26225422	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201329172		P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	213	444	0	ENST00000360408.1:c.40G>A	p.Gly14Ser	p.G14S	ENST00000360408	NM_003532.2	14	Ggt/Agt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32184819	32184822	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	164	433	0	ENST00000375023.3:c.1761_1764del	p.Thr588ArgfsTer6	p.T588Rfs*6	ENST00000375023	NM_004557.3	587	caAACA/ca																																																																															
HGF	3082	MSKCC	GRCh37	7	81381572	81381572	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	92	251	0	ENST00000222390.5:c.489G>C	p.Leu163Phe	p.L163F	ENST00000222390	NM_000601.4	163	ttG/ttC																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			808	44	354	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			777	31	438	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	29	346	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			805	61	344	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	15	354	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs775126020		P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	36	272	0	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256536	115256536	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730880965		P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	40	281	0	ENST00000369535.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000369535	NM_002524.4	59	Gct/Act																																																																															
AR	367	MSKCC	GRCh37	X	66765080	66765080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	17	191	0	ENST00000374690.3:c.92G>A	p.Arg31His	p.R31H	ENST00000374690	NM_000044.3	31	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	31	332	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
CASP8	841	MSKCC	GRCh37	2	202141587	202141587	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771150445		P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	19	367	0	ENST00000358485.4:c.875G>A	p.Arg292Gln	p.R292Q	ENST00000358485	NM_001080125.1	292	cGg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900066	151900066	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	38	335	0	ENST00000262189.6:c.4045C>T	p.Arg1349Ter	p.R1349*	ENST00000262189	NM_170606.2	1349	Cga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257980	16257980	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761228108		P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			748	67	378	0	ENST00000375759.3:c.5245G>A	p.Val1749Ile	p.V1749I	ENST00000375759	NM_015001.2	1749	Gta/Ata																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646980	23646981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1060502767		P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	42	419	0	ENST00000261584.4:c.886dup	p.Met296AsnfsTer7	p.M296Nfs*7	ENST00000261584	NM_024675.3	296	atg/aAtg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141572717	141572717	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1015925954		P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	38	331	0	ENST00000220592.5:c.353C>T	p.Thr118Met	p.T118M	ENST00000220592	NM_012154.3	118	aCg/aTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932138	39932138	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201595640		P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	24	198	0	ENST00000378444.4:c.2461G>A	p.Val821Met	p.V821M	ENST00000378444	NM_001123385.1	821	Gtg/Atg																																																																															
REL	5966	MSKCC	GRCh37	2	61144153	61144153	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	33	267	0	ENST00000295025.8:c.535+1G>A		p.X179_splice	ENST00000295025	NM_002908.2	179																																																																																
FAT1	2195	MSKCC	GRCh37	4	187628361	187628361	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1203002890		P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			785	61	381	0	ENST00000441802.2:c.2621C>T	p.Thr874Met	p.T874M	ENST00000441802	NM_005245.3	874	aCg/aTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81973562	81973562	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762731399		P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			736	56	375	0	ENST00000359376.3:c.3379C>A	p.Pro1127Thr	p.P1127T	ENST00000359376	NM_002661.3	1127	Cca/Aca																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662337	227662337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			821	72	410	0	ENST00000305123.5:c.1118G>A	p.Arg373His	p.R373H	ENST00000305123	NM_005544.2	373	cGc/cAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	38	318	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214651	36214651	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752780080		P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	39	350	0	ENST00000222270.7:c.3077C>T	p.Thr1026Met	p.T1026M	ENST00000222270	NM_014727.1	1026	aCg/aTg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2047283	2047283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	11	72	0	ENST00000349721.2:c.845C>T	p.Ala282Val	p.A282V	ENST00000349721	NM_003070.3	282	gCg/gTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29657362	29657362	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	31	342	0	ENST00000358273.4:c.5662del	p.Ile1888SerfsTer6	p.I1888Sfs*6	ENST00000358273	NM_001042492.2	1886	ttA/tt																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839711	27839711	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747419710		P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			806	65	417	0	ENST00000328488.2:c.383C>T	p.Ala128Val	p.A128V	ENST00000328488	NM_003533.2	128	gCg/gTg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010608	48010608	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	47	183	0	ENST00000234420.5:c.236C>A	p.Ser79Ter	p.S79*	ENST00000234420	NM_000179.2	79	tCg/tAg																																																																															
B2M	567	MSKCC	GRCh37	15	45007699	45007699	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	42	372	0	ENST00000558401.1:c.146G>T	p.Gly49Val	p.G49V	ENST00000558401	NM_004048.2	49	gGg/gTg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11027127	11027127	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	33	308	0	ENST00000327064.4:c.892A>G	p.Thr298Ala	p.T298A	ENST00000327064	NM_199141.1	298	Acg/Gcg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9770641	9770641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	44	344	0	ENST00000377346.4:c.128G>A	p.Ser43Asn	p.S43N	ENST00000377346	NM_005026.3	43	aGc/aAc																																																																															
APC	324	MSKCC	GRCh37	5	112173766	112173766	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	41	379	0	ENST00000257430.4:c.2475T>G	p.Tyr825Ter	p.Y825*	ENST00000257430	NM_000038.5	825	taT/taG																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2218111	2218111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			716	45	400	0	ENST00000326181.6:c.173G>T	p.Arg58Met	p.R58M	ENST00000326181	NM_032271.2	58	aGg/aTg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741798	145741798	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			708	50	378	0	ENST00000428558.2:c.705G>T	p.Gln235His	p.Q235H	ENST00000428558	NM_004260.3	235	caG/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0062951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			55	369	536	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504321	8504321	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200847027		P-0062951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			69	775	509	0	ENST00000356435.5:c.1762C>T	p.Arg588Cys	p.R588C	ENST00000356435		588	Cgc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385183	41385183	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1423243089		P-0062951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			585	131	463	2	ENST00000373198.4:c.778C>T	p.Arg260Trp	p.R260W	ENST00000373198	NM_133170.3	260	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs45476696		P-0062951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			43	518	498	0	ENST00000304494.5:c.457G>T	p.Asp153Tyr	p.D153Y	ENST00000304494	NM_000077.4	153	Gac/Tac																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240047	41240060	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCGCGGCGGCCG	GGCCGCGGCGGCCG	-			P-0062951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			8	59	178	0	ENST00000379561.5:c.290_303del	p.Ala97GlyfsTer99	p.A97Gfs*99	ENST00000379561	NM_002015.3	97	gCGGCCGCCGCGGCC/g																																																																															
MSH3	4437	MSKCC	GRCh37	5	80088622	80088622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			128	104	443	0	ENST00000265081.6:c.2614G>A	p.Gly872Arg	p.G872R	ENST00000265081	NM_002439.4	872	Gga/Aga																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14015990	14015990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			239	100	434	0	ENST00000311895.7:c.310G>A	p.Gly104Ser	p.G104S	ENST00000311895	NM_005236.2	104	Ggt/Agt																																																																															
ATR	545	MSKCC	GRCh37	3	142268503	142268503	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	75	426	0	ENST00000350721.4:c.2989G>T	p.Val997Phe	p.V997F	ENST00000350721	NM_001184.3	997	Gtt/Ttt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346447	89346447	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			225	93	554	1	ENST00000301030.4:c.6503C>G	p.Pro2168Arg	p.P2168R	ENST00000301030	NM_001256183.1	2168	cCa/cGa																																																																															
TOP1	7150	MSKCC	GRCh37	20	39708780	39708780	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0062951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			375	94	376	0	ENST00000361337.2:c.391G>T	p.Glu131Ter	p.E131*	ENST00000361337	NM_003286.2	131	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431891	49431892	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0062951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			82	573	627	0	ENST00000301067.7:c.9247dup	p.Glu3083GlyfsTer15	p.E3083Gfs*15	ENST00000301067	NM_003482.3	3083	gag/gGag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81904533	81904555	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAAATCGGTAAGATGATTCTTG	AAAAATCGGTAAGATGATTCTTG	-			P-0062951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	55	355	0	ENST00000359376.3:c.642_648+16del		p.X214_splice	ENST00000359376	NM_002661.3	214																																																																																
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0069638-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			231	348	655	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68855984	68855984	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121964877		P-0069638-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			206	289	531	0	ENST00000261769.5:c.1792C>T	p.Arg598Ter	p.R598*	ENST00000261769	NM_004360.3	598	Cga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486130	8486130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069638-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			532	174	554	0	ENST00000356435.5:c.2687C>T	p.Ser896Leu	p.S896L	ENST00000356435		896	tCa/tTa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871797	12871797	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069638-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			382	241	427	0	ENST00000228872.4:c.514G>T	p.Glu172Ter	p.E172*	ENST00000228872	NM_004064.3	172	Gaa/Taa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16203058	16203058	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069638-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			354	129	469	0	ENST00000375759.3:c.766C>T	p.Gln256Ter	p.Q256*	ENST00000375759	NM_015001.2	256	Cag/Tag																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200112	128200112	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1420609104		P-0069638-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			340	291	494	0	ENST00000341105.2:c.1193G>A	p.Arg398Gln	p.R398Q	ENST00000341105	NM_032638.4	398	cGg/cAg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52719794	52719794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069638-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			381	278	504	0	ENST00000322088.6:c.1006G>A	p.Asp336Asn	p.D336N	ENST00000322088	NM_014225.5	336	Gat/Aat																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946352	2946352	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069638-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			755	229	508	0	ENST00000396946.4:c.3385G>C	p.Glu1129Gln	p.E1129Q	ENST00000396946	NM_032415.4	1129	Gag/Cag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535358	66535358	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069638-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			336	126	534	0	ENST00000273854.3:c.103C>A	p.Pro35Thr	p.P35T	ENST00000273854	NM_004439.5	35	Cct/Act																																																																															
DDR2	4921	MSKCC	GRCh37	1	162688912	162688912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069638-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			370	84	322	0	ENST00000367921.3:c.59C>T	p.Ser20Phe	p.S20F	ENST00000367921	NM_006182.2	20	tCt/tTt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056024	26056024	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069638-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			506	130	440	0	ENST00000343677.2:c.633G>C	p.Lys211Asn	p.K211N	ENST00000343677	NM_005319.3	211	aaG/aaC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921550	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAA			P-0069638-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			217	153	293	0	ENST00000263967.3:c.1032_1034dup	p.Val344_Asn345insLys	p.V344_N345insK	ENST00000263967	NM_006218.2	344	gtg/gtGAAg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12629136	12629136	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0069638-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			318	92	279	0	ENST00000251849.4:c.1371C>A	p.Asp457Glu	p.D457E	ENST00000251849	NM_002880.3	457	gaC/gaA																																																																															
NF1	4763	MSKCC	GRCh37	17	29556163	29556163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199474785		P-0069638-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			65	78	180	0	ENST00000358273.4:c.2530C>T	p.Leu844Phe	p.L844F	ENST00000358273	NM_001042492.2	844	Ctt/Ttt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435534	110435534	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1056078		P-0069638-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			229	195	510	0	ENST00000375856.3:c.2867C>T	p.Ser956Leu	p.S956L	ENST00000375856	NM_003749.2	956	tCg/tTg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852453	63852453	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1343745122		P-0069638-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			337	257	558	0	ENST00000279873.7:c.3231C>G	p.Ile1077Met	p.I1077M	ENST00000279873	NM_032199.2	1077	atC/atG																																																																															
SLX4	84464	MSKCC	GRCh37	16	3651182	3651182	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069638-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			187	376	447	0	ENST00000294008.3:c.961G>T	p.Glu321Ter	p.E321*	ENST00000294008	NM_032444.2	321	Gaa/Taa																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62324308	62324308	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs769930889		P-0069638-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			1508	346	550	0	ENST00000482936.1:c.2803C>T	p.Leu935Phe	p.L935F	ENST00000482936		935	Ctc/Ttc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099179	157099179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069638-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			222	344	479	0	ENST00000346085.5:c.116C>A	p.Ser39Tyr	p.S39Y	ENST00000346085	NM_020732.3	39	tCc/tAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508482	106508482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069638-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			527	37	452	0	ENST00000359195.3:c.476G>C	p.Gly159Ala	p.G159A	ENST00000359195	NM_002649.2	159	gGc/gCc																																																																															
WT1	7490	MSKCC	GRCh37	11	32414251	32414251	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069638-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			304	116	429	0	ENST00000332351.3:c.1300C>G	p.Arg434Gly	p.R434G	ENST00000332351	NM_024426.4	434	Cgt/Ggt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30668283	30668283	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069638-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			334	281	427	0	ENST00000376406.3:c.6229G>C	p.Glu2077Gln	p.E2077Q	ENST00000376406	NM_014641.2	2077	Gag/Cag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132580	11132580	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069638-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			409	337	585	0	ENST00000344626.4:c.2796C>G	p.Ile932Met	p.I932M	ENST00000344626	NM_003072.3	932	atC/atG																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225698	26225698	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069638-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			923	50	700	0	ENST00000360408.1:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000360408	NM_003532.2	106	Gag/Cag																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716325	52716325	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			28	9	539	0	ENST00000322088.6:c.769T>G	p.Trp257Gly	p.W257G	ENST00000322088	NM_014225.5	257	Tgg/Ggg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30320962	30320962	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372771855		P-0076416-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			428	50	418	0	ENST00000322652.5:c.1372C>T	p.Arg458Cys	p.R458C	ENST00000322652	NM_015355.2	458	Cgc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221961	1221961	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0076416-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			341	42	443	0	ENST00000326873.7:c.876C>A	p.Tyr292Ter	p.Y292*	ENST00000326873	NM_000455.4	292	taC/taA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0076416-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			350	28	358	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602841	10602841	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076416-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			549	29	539	0	ENST00000171111.5:c.737T>C	p.Phe246Ser	p.F246S	ENST00000171111	NM_203500.1	246	tTc/tCc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354441	354441	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0076416-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			461	43	491	0	ENST00000262320.3:c.1117C>G	p.Arg373Gly	p.R373G	ENST00000262320	NM_003502.3	373	Cgc/Ggc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0079330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	125	412	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175755	+	frameshift_variant	Frame_Shift_Del	DEL	TTTA	TTTA	-			P-0079330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	221	504	0	ENST00000257430.4:c.4463_4466del	p.Leu1488TyrfsTer18	p.L1488Yfs*18	ENST00000257430	NM_000038.5	1487	acTTTA/ac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767326		P-0079330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			33	52	312	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0079330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	130	566	0	ENST00000269305.4:c.993+2T>C		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
ELF3	1999	MSKCC	GRCh37	1	201981116	201981117	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0079330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	142	388	0	ENST00000359651.3:c.197dup	p.Trp67LeufsTer25	p.W67Lfs*25	ENST00000359651		65	-/T																																																																															
APC	324	MSKCC	GRCh37	5	112170863	112170863	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0079330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	72	392	0	ENST00000257430.4:c.1958+1G>T		p.X653_splice	ENST00000257430	NM_000038.5	653																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0079330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	61	280	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778996	3778996	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	148	621	0	ENST00000262367.5:c.6052C>G	p.Pro2018Ala	p.P2018A	ENST00000262367	NM_004380.2	2018	Ccc/Gcc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2039765	2039779	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAACAG	CAGCAGCAGCAACAG	-			P-0079330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	43	689	0	ENST00000349721.2:c.666_680del	p.Gln234_Gln238del	p.Q234_Q238del	ENST00000349721	NM_003070.3	219	CAGCAGCAGCAACAG/-																																																																															
SETD2	29072	MSKCC	GRCh37	3	47158238	47158239	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTCT			P-0079330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			60	66	292	0	ENST00000409792.3:c.4457_4460dup	p.Asn1488GlufsTer3	p.N1488Efs*3	ENST00000409792	NM_014159.6	1487	aag/aaAGAAg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857250	9857250	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866228360		P-0080629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	108	643	0	ENST00000330684.3:c.4151C>T	p.Ser1384Leu	p.S1384L	ENST00000330684	NM_001134407.1	1384	tCg/tTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528147	157528147	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751590307		P-0080629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	71	689	0	ENST00000346085.5:c.5872G>A	p.Val1958Met	p.V1958M	ENST00000346085	NM_020732.3	1958	Gtg/Atg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115403	115115403	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	26	393	0	ENST00000257566.3:c.923del	p.Asn308MetfsTer15	p.N308Mfs*15	ENST00000257566	NM_016569.3	308	aAt/at																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437956	49438000	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCCACTGGTGCCCTCACCCGTCTCACCCTCGTCGGGCTGCCCAT	CCCCACTGGTGCCCTCACCCGTCTCACCCTCGTCGGGCTGCCCAT	-			P-0080629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	83	570	0	ENST00000301067.7:c.5171_5188+27del		p.X1724_splice	ENST00000301067	NM_003482.3	1724																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49438013	49438013	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	94	671	0	ENST00000301067.7:c.5158G>C	p.Val1720Leu	p.V1720L	ENST00000301067	NM_003482.3	1720	Gtg/Ctg																																																																															
CD276	80381	MSKCC	GRCh37	15	73996239	73996239	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	17	240	0	ENST00000318443.5:c.973C>G	p.Leu325Val	p.L325V	ENST00000318443	NM_001024736.1	325	Ctg/Gtg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25994408	25994409	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	A			P-0080629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	48	480	0	ENST00000435504.4:c.404dup	p.Ser136IlefsTer18	p.S136Ifs*18	ENST00000435504		135	gta/gtTa																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839699	27839699	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	55	670	0	ENST00000328488.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000328488	NM_003533.2	132	cGa/cTa																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839738	27839738	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			705	60	736	0	ENST00000328488.2:c.356C>G	p.Thr119Ser	p.T119S	ENST00000328488	NM_003533.2	119	aCt/aGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061836	38061862	+	inframe_deletion	In_Frame_Del	DEL	GTTCATGGTCATGTAGGTGTTCATGGA	GTTCATGGTCATGTAGGTGTTCATGGA	-			P-0081020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			57	8	760	0	ENST00000250448.2:c.127_153del	p.Ser43_Asn51del	p.S43_N51del	ENST00000250448	NM_004496.3	43	TCCATGAACACCTACATGACCATGAAC/-																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144175	11144175	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	19	631	0	ENST00000344626.4:c.3756G>T	p.Glu1252Asp	p.E1252D	ENST00000344626	NM_003072.3	1252	gaG/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs786203436		P-0081231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	289	814	1	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259197	89259197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	168	641	0	ENST00000336596.2:c.341G>A	p.Gly114Glu	p.G114E	ENST00000336596	NM_005233.5	114	gGa/gAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433060	49433060	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1251778848		P-0081231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	203	696	0	ENST00000301067.7:c.8311C>T	p.Arg2771Ter	p.R2771*	ENST00000301067	NM_003482.3	2771	Cga/Tga																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114773	73114774	+	missense_variant	Missense_Mutation	DNP	GA	GA	TG			P-0081231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			17	12	72	0	ENST00000356692.5:c.1154_1155delinsTG	p.Gly385Val	p.G385V	ENST00000356692		385	gGA/gTG																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699204	117699204	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0081231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	84	416	0	ENST00000369458.3:c.437A>C	p.Lys146Thr	p.K146T	ENST00000369458	NM_024626.3	146	aAa/aCa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061236	38061237	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCGGAGTCC			P-0081231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	225	759	0	ENST00000250448.2:c.744_752dup	p.Asp249_Gly251dup	p.D249_G251dup	ENST00000250448	NM_004496.3	249	ggc/ggGGACTCCGGc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902304	50902304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	250	628	0	ENST00000440232.2:c.196G>A	p.Ala66Thr	p.A66T	ENST00000440232	NM_002691.3	66	Gca/Aca																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100294	8100294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	140	982	0	ENST00000346208.3:c.268C>T	p.Leu90Phe	p.L90F	ENST00000346208		90	Ctt/Ttt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5265039	5265039	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748364975		P-0081299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	110	597	0	ENST00000357368.4:c.548G>A	p.Arg183His	p.R183H	ENST00000357368	NM_002850.3	183	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0081299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			22	18	299	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579316	7579317	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0081299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			39	575	523	0	ENST00000269305.4:c.370_371insA	p.Cys124Ter	p.C124*	ENST00000269305	NM_001126112.2	124	tgc/tAgc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128044492	128044492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	97	488	0	ENST00000285398.2:c.1129C>G	p.Gln377Glu	p.Q377E	ENST00000285398	NM_000122.1	377	Cag/Gag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778300	3778300	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	161	619	0	ENST00000262367.5:c.6748A>G	p.Met2250Val	p.M2250V	ENST00000262367	NM_004380.2	2250	Atg/Gtg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117631431	117631431	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081301-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	42	281	0	ENST00000368508.3:c.6247A>G	p.Arg2083Gly	p.R2083G	ENST00000368508	NM_002944.2	2083	Aga/Gga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717678	89717696	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGACAAGTTCATGTACT	GAAGACAAGTTCATGTACT	-			P-0081301-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	24	446	0	ENST00000371953.3:c.703_721del	p.Glu235LeufsTer15	p.E235Lfs*15	ENST00000371953	NM_000314.4	235	GAAGACAAGTTCATGTACTtt/tt																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42840407	42840426	+	frameshift_variant	Frame_Shift_Del	DEL	GCATCTCTGTGTCTCAATGA	GCATCTCTGTGTCTCAATGA	-			P-0081301-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	148	609	0	ENST00000398585.3:c.1322_1341del	p.Leu441GlnfsTer7	p.L441Qfs*7	ENST00000398585	NM_001135099.1	441	cTCATTGAGACACAGAGATGC/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0081333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	393	606	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379683	17379683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	225	661	0	ENST00000359435.4:c.68C>T	p.Pro23Leu	p.P23L	ENST00000359435	NM_001033549.1	23	cCt/cTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923375	9923375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	219	642	0	ENST00000330684.3:c.1912G>A	p.Ala638Thr	p.A638T	ENST00000330684	NM_001134407.1	638	Gct/Act																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52719838	52719838	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			723	381	719	0	ENST00000322088.6:c.1050G>T	p.Met350Ile	p.M350I	ENST00000322088	NM_014225.5	350	atG/atT																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38614571	38614571	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	229	499	0	ENST00000299084.4:c.337G>C	p.Asp113His	p.D113H	ENST00000299084	NM_152594.2	113	Gat/Cat																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351493	89351493	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0081333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	254	824	0	ENST00000301030.4:c.1457C>G	p.Ser486Ter	p.S486*	ENST00000301030	NM_001256183.1	486	tCa/tGa																																																																															
NF1	4763	MSKCC	GRCh37	17	29662050	29662050	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0081333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	257	561	0	ENST00000358273.4:c.6006+1G>T		p.X2002_splice	ENST00000358273	NM_001042492.2	2002																																																																																
KIT	3815	MSKCC	GRCh37	4	55564687	55564687	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	328	597	0	ENST00000288135.5:c.575G>T	p.Gly192Val	p.G192V	ENST00000288135	NM_000222.2	192	gGc/gTc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347935	89347935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	441	748	2	ENST00000301030.4:c.5015C>T	p.Ser1672Leu	p.S1672L	ENST00000301030	NM_001256183.1	1672	tCa/tTa																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289663	33289663	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	211	557	0	ENST00000374542.5:c.40G>C	p.Asp14His	p.D14H	ENST00000374542	NM_001141970.1	14	Gac/Cac																																																																															
MYC	4609	MSKCC	GRCh37	8	128750991	128750991	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1314	974	660	0	ENST00000377970.2:c.528C>G	p.Ser176Arg	p.S176R	ENST00000377970	NM_002467.4	176	agC/agG																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38614595	38614595	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	189	433	0	ENST00000299084.4:c.361G>C	p.Glu121Gln	p.E121Q	ENST00000299084	NM_152594.2	121	Gag/Cag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820756	3820756	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			825	242	816	0	ENST00000262367.5:c.2695C>G	p.Pro899Ala	p.P899A	ENST00000262367	NM_004380.2	899	Ccc/Gcc																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33680975	33680975	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			754	184	650	0	ENST00000308377.4:c.1302C>G	p.Phe434Leu	p.F434L	ENST00000308377	NM_152270.3	434	ttC/ttG																																																																															
NF1	4763	MSKCC	GRCh37	17	29679434	29679434	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0081333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	325	509	0	ENST00000358273.4:c.7615+2T>G		p.X2539_splice	ENST00000358273	NM_001042492.2	2539																																																																																
RAD51D	5892	MSKCC	GRCh37	17	33428326	33428326	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779808083		P-0081333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	475	701	0	ENST00000335858.7:c.461G>A	p.Arg154His	p.R154H	ENST00000335858	NM_133629.2	154	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216428	36216428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	675	863	0	ENST00000222270.7:c.3691G>A	p.Glu1231Lys	p.E1231K	ENST00000222270	NM_014727.1	1231	Gag/Aag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36217250	36217250	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	435	543	0	ENST00000222270.7:c.3999G>C	p.Glu1333Asp	p.E1333D	ENST00000222270	NM_014727.1	1333	gaG/gaC																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88672122	88672122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	70	293	0	ENST00000372037.3:c.656G>A	p.Gly219Glu	p.G219E	ENST00000372037	NM_004329.2	219	gGg/gAg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44966694	44966694	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			74	245	286	0	ENST00000377967.4:c.3918G>C	p.Leu1306Phe	p.L1306F	ENST00000377967	NM_021140.2	1306	ttG/ttC																																																																															
MYC	4609	MSKCC	GRCh37	8	128751161	128751161	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1478	962	754	1	ENST00000377970.2:c.698C>A	p.Pro233Gln	p.P233Q	ENST00000377970	NM_002467.4	233	cCg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0081506-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	78	380	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857178	9857178	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763219483		P-0081506-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	54	423	1	ENST00000330684.3:c.4223C>T	p.Thr1408Met	p.T1408M	ENST00000330684	NM_001134407.1	1408	aCg/aTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041677	47041677	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081506-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	79	211	0	ENST00000329236.7:c.1669del	p.Glu557ArgfsTer69	p.E557Rfs*69	ENST00000329236	NM_001204466.1	556	aaG/aa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	438008	438008	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081506-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	78	280	0	ENST00000399788.2:c.1961T>C	p.Val654Ala	p.V654A	ENST00000399788	NM_001042603.1	654	gTa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0081555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			83	273	718	2	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88671959	88671959	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767919095		P-0081555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	58	355	2	ENST00000360948.2:c.1211C>T	p.Thr404Met	p.T404M	ENST00000360948	NM_001012338.2	404	aCg/aTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157525018	157525018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs544895806		P-0081555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	94	486	0	ENST00000346085.5:c.4913G>A	p.Arg1638His	p.R1638H	ENST00000346085	NM_020732.3	1638	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	1206	337	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467646	66467646	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0081555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	86	507	0	ENST00000273854.3:c.623A>C	p.Lys208Thr	p.K208T	ENST00000273854	NM_004439.5	208	aAg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578402	7578404	+	inframe_deletion	In_Frame_Del	DEL	GCA	GCA	-			P-0081558-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	361	623	0	ENST00000269305.4:c.526_528del	p.Cys176del	p.C176del	ENST00000269305	NM_001126112.2	176	TGC/-																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100645	8100645	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1218595084		P-0081558-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			766	236	690	0	ENST00000346208.3:c.619G>A	p.Ala207Thr	p.A207T	ENST00000346208		207	Gcc/Acc																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792384	33792385	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0081558-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			834	281	487	0	ENST00000498907.2:c.936_937del	p.Lys313GlyfsTer7	p.K313Gfs*7	ENST00000498907	NM_004364.3	312	caGAag/caag																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577330	64577333	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0081559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	385	393	0	ENST00000337652.1:c.249_252del	p.Ile85SerfsTer33	p.I85Sfs*33	ENST00000337652	NM_130803.2	83	ctGTCT/ct																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654678	67654678	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	176	317	0	ENST00000264010.4:c.1165A>G	p.Arg389Gly	p.R389G	ENST00000264010	NM_006565.3	389	Agg/Ggg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123224729	123224729	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			63	286	175	0	ENST00000218089.9:c.3493C>G	p.Gln1165Glu	p.Q1165E	ENST00000218089	NM_001042749.1	1165	Caa/Gaa																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288670	33288671	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0081559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	414	431	0	ENST00000374542.5:c.881dup	p.Lys295GlufsTer49	p.K295Efs*49	ENST00000374542	NM_001141970.1	294	gag/gaAg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47142981	47142981	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	243	218	0	ENST00000409792.3:c.4982A>G	p.Glu1661Gly	p.E1661G	ENST00000409792	NM_014159.6	1661	gAg/gGg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602335	10602335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	27	641	0	ENST00000171111.5:c.1243C>T	p.Arg415Cys	p.R415C	ENST00000171111	NM_203500.1	415	Cgc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	23	570	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098400	47098400	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	24	552	0	ENST00000409792.3:c.6874C>G	p.Gln2292Glu	p.Q2292E	ENST00000409792	NM_014159.6	2292	Caa/Gaa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11169760	11169760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	14	475	0	ENST00000361445.4:c.7393G>A	p.Glu2465Lys	p.E2465K	ENST00000361445	NM_004958.3	2465	Gag/Aag																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51503124	51503124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	13	484	1	ENST00000260433.2:c.1393G>A	p.Gly465Arg	p.G465R	ENST00000260433		465	Gga/Aga																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245960	41245960	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0081627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			81	17	510	0	ENST00000357654.3:c.1588G>T	p.Glu530Ter	p.E530*	ENST00000357654	NM_007294.3	530	Gaa/Taa																																																																															
BARD1	580	MSKCC	GRCh37	2	215593694	215593694	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	12	458	0	ENST00000260947.4:c.2040G>T	p.Trp680Cys	p.W680C	ENST00000260947	NM_000465.2	680	tgG/tgT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636793	8636793	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	25	471	0	ENST00000356435.5:c.116G>C	p.Gly39Ala	p.G39A	ENST00000356435		39	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0066823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			78	183	472	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153253798	153253806	+	inframe_deletion	In_Frame_Del	DEL	CTCCAGTAG	CTCCAGTAG	-			P-0066823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			54	82	524	0	ENST00000281708.4:c.927_935del	p.Tyr310_Arg312del	p.Y310_R312del	ENST00000281708	NM_033632.3	309	cgCTACTGGAGa/cga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960071	134960071	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			223	122	682	0	ENST00000398015.3:c.2428T>A	p.Tyr810Asn	p.Y810N	ENST00000398015	NM_004441.4	810	Tat/Aat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604776	48604776	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs377767382		P-0079314-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			233	234	562	0	ENST00000342988.3:c.1598T>G	p.Leu533Arg	p.L533R	ENST00000342988	NM_005359.5	533	cTc/cGc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900464	3900464	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079314-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			252	245	644	0	ENST00000262367.5:c.632del	p.Gly211AspfsTer33	p.G211Dfs*33	ENST00000262367	NM_004380.2	211	gGa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0079855-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			503	100	401	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0079855-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			522	49	461	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0079855-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			280	64	304	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2645832	2645832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079855-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			449	83	344	0	ENST00000342085.4:c.1382G>A	p.Gly461Asp	p.G461D	ENST00000342085	NM_002613.4	461	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577571	7577572	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGTAGT			P-0080321-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			306	5	0	0	ENST00000269305.4:c.704_709dup	p.Asn235_Tyr236dup	p.N235_Y236dup	ENST00000269305	NM_001126112.2	235	atg/aACTACAtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882019		P-0080428-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			565	12	600	0	ENST00000269305.4:c.455dup	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0080428-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			212	8	316	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84391434	84391434	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0080759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	50	236	0	ENST00000321945.7:c.398T>G	p.Leu133Arg	p.L133R	ENST00000321945	NM_139076.2	133	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577586	7577586	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0081280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	157	442	0	ENST00000269305.4:c.695T>G	p.Ile232Ser	p.I232S	ENST00000269305	NM_001126112.2	232	aTc/aGc																																																																															
WT1	7490	MSKCC	GRCh37	11	32413565	32413565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	8	450	0	ENST00000332351.3:c.1385G>T	p.Arg462Leu	p.R462L	ENST00000332351	NM_024426.4	462	cGg/cTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141427	11141427	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	9	488	0	ENST00000344626.4:c.3404G>T	p.Arg1135Leu	p.R1135L	ENST00000344626	NM_003072.3	1135	cGg/cTg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928961	49928961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	79	650	0	ENST00000296474.3:c.3405G>A	p.Met1135Ile	p.M1135I	ENST00000296474	NM_002447.2	1135	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-	rs587780067		P-0081473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	53	442	0	ENST00000269305.4:c.365_366del	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040676	47040676	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0081473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	40	251	0	ENST00000329236.7:c.1077C>G	p.Tyr359Ter	p.Y359*	ENST00000329236	NM_001204466.1	359	taC/taG																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18747435	18747435	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	11	343	2	ENST00000266497.5:c.3896G>T	p.Cys1299Phe	p.C1299F	ENST00000266497		1299	tGt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0081473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	31	338	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176618957	176618957	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	44	383	0	ENST00000439151.2:c.1000C>G	p.Arg334Gly	p.R334G	ENST00000439151	NM_022455.4	334	Cgc/Ggc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862864	9862864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	26	414	0	ENST00000330684.3:c.2439C>G	p.Asp813Glu	p.D813E	ENST00000330684	NM_001134407.1	813	gaC/gaG																																																																															
MTOR	2475	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587777894		P-0081474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	282	425	0	ENST00000361445.4:c.6644C>T	p.Ser2215Phe	p.S2215F	ENST00000361445	NM_004958.3	2215	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0081474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	182	344	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs483352697		P-0081474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	331	660	0	ENST00000269305.4:c.587G>A	p.Arg196Gln	p.R196Q	ENST00000269305	NM_001126112.2	196	cGa/cAa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296215	15296215	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144163298		P-0081474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			850	98	690	0	ENST00000263388.2:c.2149C>T	p.Arg717Cys	p.R717C	ENST00000263388	NM_000435.2	717	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0081474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	78	256	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265829	41266851	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGTGCAATCCCTGAACTGACAAAACTGCTAAATGACGAGGACCAGGTAAGCAATGACATAGCTAGCTTTTTAGTCTGCTTTGAAGTAAATGCTCAAGGGGAGTAGTTTCAGAATGTCTACCCAATACCAGTACTTGAAAACTAACGATGTTTCTGAATTCCTGTATTACAGGTGGTGGTTAATAAGGCTGCAGTTATG	TGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGTGCAATCCCTGAACTGACAAAACTGCTAAATGACGAGGACCAGGTAAGCAATGACATAGCTAGCTTTTTAGTCTGCTTTGAAGTAAATGCTCAAGGGGAGTAGTTTCAGAATGTCTACCCAATACCAGTACTTGAAAACTAACGATGTTTCTGAATTCCTGTATTACAGGTGGTGGTTAATAAGGCTGCAGTTATG	-			P-0081474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			44	116	82	0	ENST00000349496.5:c.14-188_522del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
FOXP1	27086	MSKCC	GRCh37	3	71050148	71050148	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0081474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	89	359	0	ENST00000318789.4:c.1037A>C	p.Gln346Pro	p.Q346P	ENST00000318789	NM_032682.5	346	cAg/cCg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522134	157522134	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			739	142	627	0	ENST00000346085.5:c.4406A>G	p.Asn1469Ser	p.N1469S	ENST00000346085	NM_020732.3	1469	aAt/aGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242484	55242507	+	inframe_deletion	In_Frame_Del	DEL	TCTCCGAAAGCCAACAAGGAAATC	TCTCCGAAAGCCAACAAGGAAATC	-	rs121913463		P-0081479-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	61	427	0	ENST00000275493.2:c.2254_2277del	p.Ser752_Ile759del	p.S752_I759del	ENST00000275493	NM_005228.3	752	TCTCCGAAAGCCAACAAGGAAATC/-																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445722	29445722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	24	476	0	ENST00000544604.2:c.1553C>T	p.Pro518Leu	p.P518L	ENST00000544604	NM_001206998.1	518	cCc/cTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0081546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	37	263	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0081546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	275	543	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0081546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	113	539	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264066389		P-0081546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	168	505	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222796	5222796	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756049037		P-0081546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	202	586	0	ENST00000357368.4:c.3007G>A	p.Asp1003Asn	p.D1003N	ENST00000357368	NM_002850.3	1003	Gac/Aac																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022784	31022784	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs779078826		P-0081546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1085	149	645	0	ENST00000375687.4:c.2269C>T	p.Gln757Ter	p.Q757*	ENST00000375687	NM_015338.5	757	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991632	72991632	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781454634		P-0081546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	96	632	0	ENST00000268489.5:c.2413C>T	p.Arg805Trp	p.R805W	ENST00000268489	NM_006885.3	805	Cgg/Tgg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3831242	3831242	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	193	485	0	ENST00000262367.5:c.1639del	p.Ser547GlnfsTer15	p.S547Qfs*15	ENST00000262367	NM_004380.2	547	Tca/ca																																																																															
AGO2	27161	MSKCC	GRCh37	8	141566060	141566060	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	41	528	0	ENST00000220592.5:c.1204A>G	p.Lys402Glu	p.K402E	ENST00000220592	NM_012154.3	402	Aaa/Gaa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123181291	123181291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	35	435	0	ENST00000218089.9:c.755G>A	p.Arg252Gln	p.R252Q	ENST00000218089	NM_001042749.1	252	cGg/cAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220428	1220428	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	207	580	0	ENST00000326873.7:c.521A>G	p.His174Arg	p.H174R	ENST00000326873	NM_000455.4	174	cAc/cGc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5218521	5218521	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772880114		P-0081550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	288	564	0	ENST00000357368.4:c.3958C>T	p.Arg1320Cys	p.R1320C	ENST00000357368	NM_002850.3	1320	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	96	349	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624863	9624863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	254	515	0	ENST00000353224.5:c.114G>T	p.Gln38His	p.Q38H	ENST00000353224	NM_177990.2	38	caG/caT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845337	151845337	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	138	556	0	ENST00000262189.6:c.13675G>T	p.Gly4559Cys	p.G4559C	ENST00000262189	NM_170606.2	4559	Ggt/Tgt																																																																															
TET1	80312	MSKCC	GRCh37	10	70333281	70333281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	58	529	0	ENST00000373644.4:c.1186C>T	p.Pro396Ser	p.P396S	ENST00000373644	NM_030625.2	396	Cca/Tca																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612999	228612999	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			733	149	648	0	ENST00000366696.1:c.28A>G	p.Lys10Glu	p.K10E	ENST00000366696	NM_003493.2	10	Aag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577567	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0081565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	194	495	0	ENST00000269305.4:c.714dup	p.Asn239Ter	p.N239*	ENST00000269305	NM_001126112.2	238	-/T																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843676	156843676	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866261145		P-0081565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			909	218	668	0	ENST00000524377.1:c.1102G>A	p.Gly368Ser	p.G368S	ENST00000524377	NM_002529.3	368	Ggc/Agc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18971687	18971687	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1273688735		P-0081565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	100	464	1	ENST00000262803.5:c.2353G>A	p.Ala785Thr	p.A785T	ENST00000262803	NM_002911.3	785	Gcc/Acc																																																																															
CARM1	10498	MSKCC	GRCh37	19	10982581	10982581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	146	685	0	ENST00000327064.4:c.203G>A	p.Gly68Asp	p.G68D	ENST00000327064	NM_199141.1	68	gGc/gAc																																																																															
MSI2	124540	MSKCC	GRCh37	17	55335666	55335667	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0081565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	99	371	0	ENST00000284073.2:c.223_224del	p.Val75ArgfsTer2	p.V75Rfs*2	ENST00000284073	NM_138962.2	74	aGT/a																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347227	89347227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	126	703	2	ENST00000301030.4:c.5723C>T	p.Pro1908Leu	p.P1908L	ENST00000301030	NM_001256183.1	1908	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579359	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TTT			P-0081568-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	37	544	0	ENST00000269305.4:c.328_329insAAA	p.Arg110delinsGlnSer	p.R110delinsQS	ENST00000269305	NM_001126112.2	110	cgt/cAAAgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0081568-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	27	291	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs786203436		P-0081572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	247	580	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599904	10599904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	268	487	0	ENST00000171111.5:c.1672G>A	p.Gly558Arg	p.G558R	ENST00000171111	NM_203500.1	558	Ggg/Agg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356362	66356362	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	70	440	0	ENST00000273854.3:c.1135C>A	p.Pro379Thr	p.P379T	ENST00000273854	NM_004439.5	379	Ccg/Acg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55124952	55124952	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	112	361	0	ENST00000257290.5:c.17C>A	p.Pro6Gln	p.P6Q	ENST00000257290	NM_006206.4	6	cCg/cAg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645064	86645064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	89	372	0	ENST00000274376.6:c.1136C>T	p.Ser379Leu	p.S379L	ENST00000274376	NM_002890.2	379	tCa/tTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207089	1207089	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	254	479	0	ENST00000326873.7:c.178del	p.Tyr60ThrfsTer4	p.Y60Tfs*4	ENST00000326873	NM_000455.4	59	tcT/tc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43784496	43784496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	107	417	0	ENST00000382044.4:c.178G>A	p.Glu60Lys	p.E60K	ENST00000382044	NM_001141980.1	60	Gaa/Aaa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123660	11123660	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	79	432	0	ENST00000344626.4:c.2310del	p.Asn770LysfsTer4	p.N770Kfs*4	ENST00000344626	NM_003072.3	770	aaC/aa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58701110	58701110	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0081572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	61	370	0	ENST00000305921.3:c.701G>T	p.Ser234Ile	p.S234I	ENST00000305921	NM_003620.3	234	aGt/aTt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117706864	117706864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	90	330	0	ENST00000368508.3:c.2286G>T	p.Trp762Cys	p.W762C	ENST00000368508	NM_002944.2	762	tgG/tgT																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748590	43748590	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	20	512	0	ENST00000382044.4:c.2216T>C	p.Leu739Pro	p.L739P	ENST00000382044	NM_001141980.1	739	cTt/cCt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371639	225371639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	42	381	0	ENST00000264414.4:c.965G>A	p.Arg322Lys	p.R322K	ENST00000264414	NM_003590.4	322	aGg/aAg																																																																															
PHF6	84295	MSKCC	GRCh37	X	133547641	133547641	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			91	103	193	0	ENST00000332070.3:c.539G>T	p.Arg180Met	p.R180M	ENST00000332070	NM_032458.2	180	aGg/aTg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12653548	12653548	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	57	364	0	ENST00000251849.4:c.221A>G	p.Asn74Ser	p.N74S	ENST00000251849	NM_002880.3	74	aAt/aGt																																																																															
TERT	7015	MSKCC	GRCh37	5	1294740	1294740	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	290	479	0	ENST00000310581.5:c.261G>T	p.Arg87Ser	p.R87S	ENST00000310581	NM_198253.2	87	agG/agT																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0081578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	206	516	3	ENST00000346208.3:c.1220dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259262	89259262	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	131	426	1	ENST00000336596.2:c.406C>G	p.Arg136Gly	p.R136G	ENST00000336596	NM_005233.5	136	Cga/Gga																																																																															
PRDM1	639	MSKCC	GRCh37	6	106543577	106543577	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	93	388	0	ENST00000369096.4:c.379C>A	p.Pro127Thr	p.P127T	ENST00000369096	NM_001198.3	127	Cct/Act																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116172	209116172	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0081578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	68	317	0	ENST00000345146.2:c.104T>A	p.Val35Glu	p.V35E	ENST00000345146	NM_005896.2	35	gTg/gAg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199493	16199493	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752192287		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	91	467	0	ENST00000375759.3:c.266G>A	p.Arg89Gln	p.R89Q	ENST00000375759	NM_015001.2	89	cGg/cAg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193205402	193205402	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368442389		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	65	401	0	ENST00000367435.3:c.1333G>A	p.Val445Ile	p.V445I	ENST00000367435	NM_024529.4	445	Gtt/Att																																																																															
SMYD3	64754	MSKCC	GRCh37	1	245927443	245927443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	58	382	2	ENST00000388985.4:c.1085del	p.Phe362SerfsTer12	p.F362Sfs*12	ENST00000388985		362	tTc/tc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			712	93	524	0	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9770520	9770520	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750425882		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	68	422	0	ENST00000377346.4:c.7C>T	p.Pro3Ser	p.P3S	ENST00000377346	NM_005026.3	3	Cct/Tct																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14300927	14300927	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370564233		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	34	147	0	ENST00000256196.4:c.571C>T	p.Arg191Trp	p.R191W	ENST00000256196		191	Cgg/Tgg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67201725	67201725	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1353245033		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			800	78	492	0	ENST00000312629.5:c.1031del	p.Pro344LeufsTer12	p.P344Lfs*12	ENST00000312629	NM_003952.2	342	gaC/ga																																																																															
CCND1	595	MSKCC	GRCh37	11	69458649	69458649	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	97	413	0	ENST00000227507.2:c.464T>C	p.Met155Thr	p.M155T	ENST00000227507	NM_053056.2	155	aTg/aCg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939413	71939413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148394356		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			748	110	565	0	ENST00000298229.2:c.268C>T	p.Arg90Cys	p.R90C	ENST00000298229	NM_001567.3	90	Cgc/Tgc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856097	111856097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1013978345		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	60	375	0	ENST00000341259.2:c.148C>T	p.Arg50Trp	p.R50W	ENST00000341259	NM_005475.2	50	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	91	545	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444133	49444133	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	117	543	0	ENST00000301067.7:c.3238G>T	p.Glu1080Ter	p.E1080*	ENST00000301067	NM_003482.3	1080	Gaa/Taa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435771	110435771	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775002025		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	63	416	0	ENST00000375856.3:c.2630C>T	p.Pro877Leu	p.P877L	ENST00000375856	NM_003749.2	877	cCg/cTg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43733757	43733757	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	37	362	0	ENST00000382044.4:c.3065del	p.Asn1022MetfsTer20	p.N1022Mfs*20	ENST00000382044	NM_001141980.1	1022	aAt/at																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348566	89348568	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-	rs753054998		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	15	489	0	ENST00000301030.4:c.4382_4384del	p.Lys1461del	p.K1461del	ENST00000301030	NM_001256183.1	1461	aAGAga/aga																																																																															
FANCA	2175	MSKCC	GRCh37	16	89813074	89813074	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138112218		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	83	449	0	ENST00000389301.3:c.3431G>A	p.Arg1144Gln	p.R1144Q	ENST00000389301	NM_000135.2	1144	cGg/cAg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	78	441	1	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
NF1	4763	MSKCC	GRCh37	17	29552144	29552144	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	81	399	0	ENST00000358273.4:c.1882del	p.Tyr628ThrfsTer3	p.Y628Tfs*3	ENST00000358273	NM_001042492.2	626	cTt/ct																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883240	37883240	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749539903		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	114	403	0	ENST00000269571.5:c.3143G>A	p.Arg1048His	p.R1048H	ENST00000269571		1048	cGc/cAc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40491387	40491387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	58	418	0	ENST00000264657.5:c.413C>T	p.Thr138Met	p.T138M	ENST00000264657	NM_139276.2	138	aCg/aTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			808	139	546	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448297	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	105	484	0	ENST00000407977.2:c.350del	p.Arg117ProfsTer41	p.R117Pfs*41	ENST00000407977		117	cGc/cc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs758286312		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	103	488	0	ENST00000407977.2:c.349C>A	p.Arg117Ser	p.R117S	ENST00000407977		117	Cgc/Agc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101932	11101932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	79	488	1	ENST00000344626.4:c.1352G>A	p.Arg451His	p.R451H	ENST00000344626	NM_003072.3	451	cGc/cAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132617	11132617	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1445478818		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	84	440	0	ENST00000344626.4:c.2833G>A	p.Ala945Thr	p.A945T	ENST00000344626	NM_003072.3	945	Gca/Aca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214398	36214398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs868041281		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	67	362	1	ENST00000222270.7:c.3057del	p.Gly1020AlafsTer4	p.G1020Afs*4	ENST00000222270	NM_014727.1	1018	Aaa/aa																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424760	47424760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	107	483	1	ENST00000404338.3:c.2834del	p.Lys945ArgfsTer3	p.K945Rfs*3	ENST00000404338	NM_004491.4	943	gAa/ga																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503808	47503808	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200440170		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	72	455	0	ENST00000404338.3:c.4363G>A	p.Val1455Met	p.V1455M	ENST00000404338	NM_004491.4	1455	Gtg/Atg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295788	212295788	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1412193732		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	72	390	0	ENST00000342788.4:c.2525G>A	p.Arg842Gln	p.R842Q	ENST00000342788	NM_005235.2	842	cGg/cAg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225370686	225370686	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1232071537		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	38	348	0	ENST00000264414.4:c.1193del	p.Lys398ArgfsTer6	p.K398Rfs*6	ENST00000264414	NM_003590.4	398	aAg/ag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	81	481	3	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794475	242794475	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs774374376		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	116	455	1	ENST00000334409.5:c.467C>A	p.Pro156His	p.P156H	ENST00000334409	NM_005018.2	156	cCc/cAc																																																																															
ALK	238	MSKCC	GRCh37	2	29606696	29606696	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769910087		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	103	438	0	ENST00000389048.3:c.1184G>A	p.Arg395His	p.R395H	ENST00000389048	NM_004304.4	395	cGt/cAt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265024	46265024	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1172968588		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	82	541	0	ENST00000371998.3:c.1894C>T	p.Arg632Trp	p.R632W	ENST00000371998		632	Cgg/Tgg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279824	46279825	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAA	rs749655240		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			742	43	510	0	ENST00000371998.3:c.3752_3753insACA	p.Gln1276dup	p.Q1276dup	ENST00000371998		1276	-/CAA																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279819	29279820	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			72	15	55	0	ENST00000544604.2:c.70dup	p.Arg24ProfsTer85	p.R24Pfs*85	ENST00000544604	NM_001206998.1	22	cgc/cgCc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29440867	29440867	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1188411932		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	84	365	0	ENST00000544604.2:c.733C>T	p.Arg245Ter	p.R245*	ENST00000544604	NM_001206998.1	245	Cga/Tga																																																																															
EP300	2033	MSKCC	GRCh37	22	41513608	41513608	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs533349187		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	85	492	0	ENST00000263253.7:c.512C>T	p.Ala171Val	p.A171V	ENST00000263253	NM_001429.3	171	gCg/gTg																																																																															
RHOA	387	MSKCC	GRCh37	3	49405966	49405966	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	49	400	0	ENST00000418115.1:c.172T>C	p.Trp58Arg	p.W58R	ENST00000418115	NM_001664.2	58	Tgg/Cgg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391214	89391214	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs530556931		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	73	382	0	ENST00000336596.2:c.1280C>T	p.Ala427Val	p.A427V	ENST00000336596	NM_005233.5	427	gCg/gTg																																																																															
REST	5978	MSKCC	GRCh37	4	57798266	57798266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	53	354	4	ENST00000309042.7:c.3242G>A	p.Arg1081His	p.R1081H	ENST00000309042	NM_005612.4	1081	cGc/cAc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131927650	131927650	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	52	302	0	ENST00000265335.6:c.1722del	p.Lys574AsnfsTer24	p.K574Nfs*24	ENST00000265335		573	Aaa/aa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515144	149515144	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764662524		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	112	488	0	ENST00000261799.4:c.338G>A	p.Arg113Gln	p.R113Q	ENST00000261799	NM_002609.3	113	cGg/cAg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053023	180053023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	86	517	1	ENST00000261937.6:c.1267del	p.Gln423ArgfsTer70	p.Q423Rfs*70	ENST00000261937	NM_182925.4	423	Cag/ag																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	130	379	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157256651	157256651	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs573836252		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	96	366	0	ENST00000346085.5:c.1978G>A	p.Gly660Arg	p.G660R	ENST00000346085	NM_020732.3	660	Gga/Aga																																																																															
SMO	6608	MSKCC	GRCh37	7	128845472	128845472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1428746507		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	70	404	0	ENST00000249373.3:c.769C>T	p.Arg257Trp	p.R257W	ENST00000249373	NM_005631.4	257	Cgg/Tgg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935520	13935520	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	48	432	0	ENST00000405192.2:c.1336del	p.His446ThrfsTer47	p.H446Tfs*47	ENST00000405192	NM_001163147.1	446	Cac/ac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151856027	151856027	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774117324		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	57	427	1	ENST00000262189.6:c.11591G>A	p.Arg3864His	p.R3864H	ENST00000262189	NM_170606.2	3864	cGc/cAc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141551427	141551427	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1196970558		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	80	438	0	ENST00000220592.5:c.1870C>T	p.Arg624Cys	p.R624C	ENST00000220592	NM_012154.3	624	Cgc/Tgc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	69	451	2	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370867	55370867	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749912364		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	65	486	0	ENST00000297316.4:c.169G>A	p.Gly57Arg	p.G57R	ENST00000297316	NM_022454.3	57	Ggg/Agg																																																																															
ABL1	25	MSKCC	GRCh37	9	133750268	133750268	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	132	351	0	ENST00000318560.5:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000318560	NM_005157.4	367	Cga/Tga																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390585	139390585	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111627256		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	149	477	0	ENST00000277541.6:c.7606G>A	p.Val2536Ile	p.V2536I	ENST00000277541	NM_017617.3	2536	Gtc/Atc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399155	139399155	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749490844		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	64	400	0	ENST00000277541.6:c.4988G>A	p.Arg1663Gln	p.R1663Q	ENST00000277541	NM_017617.3	1663	cGg/cAg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	65	336	0	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	135	429	1	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	71	220	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246027110	246027110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	51	372	0	ENST00000388985.4:c.892G>A	p.Ala298Thr	p.A298T	ENST00000388985		298	Gca/Aca																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343831	118343831	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	89	481	0	ENST00000534358.1:c.1961del	p.Pro654LeufsTer3	p.P654Lfs*3	ENST00000534358	NM_005933.3	653	Ccc/cc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118348700	118348700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	54	381	0	ENST00000534358.1:c.3353G>A	p.Gly1118Asp	p.G1118D	ENST00000534358	NM_005933.3	1118	gGc/gAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376923	118376923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	114	478	0	ENST00000534358.1:c.10316G>A	p.Gly3439Asp	p.G3439D	ENST00000534358	NM_005933.3	3439	gGc/gAc																																																																															
APLNR	187	MSKCC	GRCh37	11	57004306	57004306	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs753846480		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	90	485	0	ENST00000257254.3:c.173G>A	p.Arg58Gln	p.R58Q	ENST00000257254		58	cGg/cAg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641413	18641413	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	68	378	0	ENST00000266497.5:c.2415del	p.Phe805LeufsTer9	p.F805Lfs*9	ENST00000266497		804	taT/ta																																																																															
FANCA	2175	MSKCC	GRCh37	16	89813084	89813084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs547984666		P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	110	433	0	ENST00000389301.3:c.3421G>A	p.Ala1141Thr	p.A1141T	ENST00000389301	NM_000135.2	1141	Gcc/Acc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216580	2216580	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	73	536	0	ENST00000398665.3:c.2227del	p.Leu743TrpfsTer24	p.L743Wfs*24	ENST00000398665	NM_032482.2	742	Ccc/cc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022643	31022643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	121	523	0	ENST00000375687.4:c.2128G>A	p.Gly710Arg	p.G710R	ENST00000375687	NM_015338.5	710	Gga/Aga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790155	40790155	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	69	456	0	ENST00000373198.4:c.2576A>G	p.Gln859Arg	p.Q859R	ENST00000373198	NM_133170.3	859	cAg/cGg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21351572	21351572	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	68	438	0	ENST00000215739.8:c.2458A>G	p.Ile820Val	p.I820V	ENST00000215739	NM_006767.3	820	Atc/Gtc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52662980	52662980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	55	387	0	ENST00000394830.3:c.1373A>G	p.Asn458Ser	p.N458S	ENST00000394830	NM_018313.4	458	aAt/aGt																																																																															
APC	324	MSKCC	GRCh37	5	112177301	112177301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	93	385	0	ENST00000257430.4:c.6010G>A	p.Ala2004Thr	p.A2004T	ENST00000257430	NM_000038.5	2004	Gca/Aca																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099869	157099871	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	51	359	0	ENST00000346085.5:c.808_810del	p.Ser270del	p.S270del	ENST00000346085	NM_020732.3	269	gCCTcc/gcc																																																																															
PIM1	5292	MSKCC	GRCh37	6	37139042	37139042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	105	501	0	ENST00000373509.5:c.382G>A	p.Asp128Asn	p.D128N	ENST00000373509	NM_002648.3	128	Gat/Aat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151842340	151842340	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	76	424	0	ENST00000262189.6:c.14072A>G	p.Tyr4691Cys	p.Y4691C	ENST00000262189	NM_170606.2	4691	tAc/tGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853315	151853315	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	66	396	0	ENST00000262189.6:c.11787del	p.Ala3930ProfsTer4	p.A3930Pfs*4	ENST00000262189	NM_170606.2	3929	aaA/aa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69069583	69069583	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	36	304	0	ENST00000288368.4:c.4258T>C	p.Tyr1420His	p.Y1420H	ENST00000288368	NM_024870.2	1420	Tac/Cac																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2039821	2039821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			800	81	606	0	ENST00000349721.2:c.711G>T	p.Gln237His	p.Q237H	ENST00000349721	NM_003070.3	237	caG/caT																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222961	53222961	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	50	205	1	ENST00000375401.3:c.4111A>G	p.Lys1371Glu	p.K1371E	ENST00000375401	NM_004187.3	1371	Aag/Gag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0081590-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	51	451	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0081590-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	40	602	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206666689	206666689	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081590-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	34	547	0	ENST00000367120.3:c.2023A>G	p.Thr675Ala	p.T675A	ENST00000367120	NM_014002.3	675	Aca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934874		P-0081591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	206	521	0	ENST00000269305.4:c.451C>G	p.Pro151Ala	p.P151A	ENST00000269305	NM_001126112.2	151	Ccc/Gcc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	protein_altering_variant	In_Frame_Ins	INS	-	-	GTT	rs727504263		P-0081591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			848	149	492	0	ENST00000275493.2:c.2308_2309insGTT	p.Asp770delinsGlyTyr	p.D770delinsGY	ENST00000275493	NM_005228.3	770	gac/gGTTac																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056588	26056590	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs751086925		P-0081591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	68	485	0	ENST00000343677.2:c.67_69del	p.Lys23del	p.K23del	ENST00000343677	NM_005319.3	23	AAG/-																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300795	137300795	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	184	456	0	ENST00000481739.1:c.440A>G	p.Tyr147Cys	p.Y147C	ENST00000481739	NM_002957.4	147	tAt/tGt																																																																															
ATM	472	MSKCC	GRCh37	11	108129753	108129753	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0081592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	16	384	0	ENST00000278616.4:c.2417T>G	p.Leu806Trp	p.L806W	ENST00000278616	NM_000051.3	806	tTg/tGg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711968	89711968	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs587776670		P-0081592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			54	30	312	0	ENST00000371953.3:c.586del	p.His196ThrfsTer3	p.H196Tfs*3	ENST00000371953	NM_000314.4	196	Cac/ac																																																																															
NADK	65220	MSKCC	GRCh37	1	1691202	1691202	+	intron_variant	Intron	SNP	G	G	A	rs769485937		P-0081592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	10	355	0	ENST00000341426.5:c.263+2189C>T		p.*88*	ENST00000341426	NM_023018.4																																																																																	
FOXA1	3169	MSKCC	GRCh37	14	38061120	38061230	+	inframe_deletion	In_Frame_Del	DEL	CCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGGCGGCGCAAGTAGCAGCCGTTCTCGAAC	CCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGGCGGCGCAAGTAGCAGCCGTTCTCGAAC	-			P-0081592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	9	402	0	ENST00000250448.2:c.759_869del	p.Met253_Gly290delinsIle	p.M253_G290delinsI	ENST00000250448	NM_004496.3	253	atGTTCGAGAACGGCTGCTACTTGCGCCGCCAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGCGGc/atc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0081593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	79	48	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0081593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	270	79	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0081593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	79	102	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
AR	367	MSKCC	GRCh37	X	66937326	66937326	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137852593		P-0081593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	94	91	0	ENST00000374690.3:c.2180G>A	p.Arg727His	p.R727H	ENST00000374690	NM_000044.3	727	cGc/cAc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681090	117681090	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370524859		P-0081593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	50	119	0	ENST00000368508.3:c.3530C>T	p.Thr1177Met	p.T1177M	ENST00000368508	NM_002944.2	1177	aCg/aTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509258	106509258	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0081593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	98	93	0	ENST00000359195.3:c.1252A>T	p.Ile418Phe	p.I418F	ENST00000359195	NM_002649.2	418	Atc/Ttc																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020733	26020733	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	118	103	0	ENST00000357647.3:c.16C>G	p.Gln6Glu	p.Q6E	ENST00000357647	NM_003529.2	6	Caa/Gaa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039624	47039624	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	308	97	0	ENST00000329236.7:c.842T>C	p.Leu281Pro	p.L281P	ENST00000329236	NM_001204466.1	281	cTg/cCg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265591	41266253	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTAGTTACTGAATTGGGGCTCTGCTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTA	TTAGTTACTGAATTGGGGCTCTGCTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTA	-			P-0081593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			72	149	54	0	ENST00000349496.5:c.13+22_241+12del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
PRKD1	5587	MSKCC	GRCh37	14	30066928	30066929	+	missense_variant	Missense_Mutation	DNP	CA	CA	TG			P-0081593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	125	71	0	ENST00000331968.5:c.2202_2203inv	p.Gly735Arg	p.G735R	ENST00000331968	NM_002742.2	734	atTGga/atCAga																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953115	81953115	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1336595726		P-0047335-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			384	87	587	2	ENST00000359376.3:c.2081G>A	p.Arg694His	p.R694H	ENST00000359376	NM_002661.3	694	cGc/cAc																																																																															
SESN2	83667	MSKCC	GRCh37	1	28600576	28600576	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047335-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			495	95	634	0	ENST00000253063.3:c.927C>G	p.His309Gln	p.H309Q	ENST00000253063	NM_031459.4	309	caC/caG																																																																															
ERG	2078	MSKCC	GRCh37	21	39755331	39755331	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0047335-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			510	85	631	0	ENST00000288319.7:c.1434C>G	p.Tyr478Ter	p.Y478*	ENST00000288319	NM_182918.3	478	taC/taG																																																																															
BCL10	8915	MSKCC	GRCh37	1	85742019	85742019	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047335-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			390	52	490	0	ENST00000370580.1:c.17C>T	p.Pro6Leu	p.P6L	ENST00000370580	NM_003921.4	6	cCg/cTg																																																																															
MSI2	124540	MSKCC	GRCh37	17	55754385	55754385	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047335-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			316	55	412	0	ENST00000284073.2:c.983A>G	p.His328Arg	p.H328R	ENST00000284073	NM_138962.2	328	cAt/cGt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546582	9546582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047335-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			452	71	614	0	ENST00000353224.5:c.1440G>T	p.Met480Ile	p.M480I	ENST00000353224	NM_177990.2	480	atG/atT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080328-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	68	259	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1294693	1294693	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080328-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	29	541	0	ENST00000310581.5:c.308T>A	p.Leu103Gln	p.L103Q	ENST00000310581	NM_198253.2	103	cTg/cAg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1961207	1961207	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080328-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			302	139	404	0	ENST00000382895.3:c.2995C>A	p.Pro999Thr	p.P999T	ENST00000382895	NM_133330.2	999	Cct/Act																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423042	47423042	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0080328-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			455	139	488	0	ENST00000404338.3:c.1110A>C	p.Leu370Phe	p.L370F	ENST00000404338	NM_004491.4	370	ttA/ttC																																																																															
TP53	7157	MSKCC	GRCh37	17	7579422	7579432	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCTGGTGCA	GGGCTGGTGCA	-			P-0080328-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			410	141	641	0	ENST00000269305.4:c.255_265del	p.Ala86LeufsTer59	p.A86Lfs*59	ENST00000269305	NM_001126112.2	85	ccTGCACCAGCCCcc/cccc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729669	41729669	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080328-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			565	34	569	0	ENST00000242208.4:c.860A>G	p.Gln287Arg	p.Q287R	ENST00000242208	NM_002192.2	287	cAg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0081157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	117	193	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
BRAF	673	MSKCC	GRCh37	7	140500235	140500235	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0081157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	181	309	0	ENST00000288602.6:c.907G>T	p.Glu303Ter	p.E303*	ENST00000288602	NM_004333.4	303	Gaa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29701115	29701115	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	179	320	0	ENST00000358273.4:c.8462T>C	p.Val2821Ala	p.V2821A	ENST00000358273	NM_001042492.2	2821	gTg/gCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0081407-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	224	497	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41408924	41408924	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs778928297		P-0081407-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	184	345	0	ENST00000373198.4:c.502G>T	p.Val168Phe	p.V168F	ENST00000373198	NM_133170.3	168	Gtc/Ttc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923498	9923498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081407-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	146	336	0	ENST00000330684.3:c.1789C>T	p.Pro597Ser	p.P597S	ENST00000330684	NM_001134407.1	597	Cct/Tct																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524715	187524716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0081407-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	188	445	0	ENST00000441802.2:c.10964dup	p.Val3656ArgfsTer3	p.V3656Rfs*3	ENST00000441802	NM_005245.3	3655	ttc/ttTc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11308073	11308073	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749298128		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	165	366	0	ENST00000361445.4:c.919G>A	p.Gly307Arg	p.G307R	ENST00000361445	NM_004958.3	307	Gga/Aga																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115276425	115276425	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	24	344	0	ENST00000438362.2:c.903del	p.Phe301LeufsTer13	p.F301Lfs*13	ENST00000438362	NM_001242891.1	301	ttT/tt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261133	16261133	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140025266		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	187	397	0	ENST00000375759.3:c.8398G>A	p.Ala2800Thr	p.A2800T	ENST00000375759	NM_015001.2	2800	Gcg/Acg																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612975	228612975	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs551314787		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	32	452	0	ENST00000366696.1:c.52C>T	p.Arg18Cys	p.R18C	ENST00000366696	NM_003493.2	18	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs387906846		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	220	392	0	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599890	28599890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	131	263	0	ENST00000253063.3:c.772G>A	p.Val258Met	p.V258M	ENST00000253063	NM_031459.4	258	Gtg/Atg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784136	9784136	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	163	331	0	ENST00000377346.4:c.2704C>T	p.Arg902Ter	p.R902*	ENST00000377346	NM_005026.3	902	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910882	114910882	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs572431965		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	224	295	0	ENST00000543371.1:c.1001C>T	p.Ser334Leu	p.S334L	ENST00000543371	NM_001198531.1	334	tCa/tTa																																																																															
ATM	472	MSKCC	GRCh37	11	108124716	108124716	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765965513		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	78	315	0	ENST00000278616.4:c.2074C>T	p.Arg692Cys	p.R692C	ENST00000278616	NM_000051.3	692	Cgc/Tgc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200086	67200086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377609182		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	178	313	0	ENST00000312629.5:c.473C>T	p.Thr158Met	p.T158M	ENST00000312629	NM_003952.2	158	aCg/aTg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200616	67200616	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201207505		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	184	381	0	ENST00000312629.5:c.727C>T	p.Arg243Cys	p.R243C	ENST00000312629	NM_003952.2	243	Cgc/Tgc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115111984	115111984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	172	389	0	ENST00000257566.3:c.1756G>A	p.Val586Ile	p.V586I	ENST00000257566	NM_016569.3	586	Gtc/Atc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432651	49432651	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs727503983		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	197	367	0	ENST00000301067.7:c.8488C>T	p.Arg2830Ter	p.R2830*	ENST00000301067	NM_003482.3	2830	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56477655	56477655	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142735651		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	194	317	0	ENST00000267101.3:c.203C>T	p.Thr68Met	p.T68M	ENST00000267101	NM_001982.3	68	aCg/aTg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	189	271	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489582	56489582	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56387488		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	215	327	0	ENST00000267101.3:c.2047C>T	p.Arg683Trp	p.R683W	ENST00000267101	NM_001982.3	683	Cgg/Tgg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514619	103514619	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759875052		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	112	344	0	ENST00000355739.4:c.1120G>A	p.Ala374Thr	p.A374T	ENST00000355739	NM_000123.3	374	Gca/Aca																																																																															
MGA	23269	MSKCC	GRCh37	15	42052630	42052630	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372072518		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	211	327	0	ENST00000219905.7:c.7301G>A	p.Arg2434Gln	p.R2434Q	ENST00000219905	NM_001164273.1	2434	cGg/cAg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3656556	3656556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147872182		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	196	353	0	ENST00000294008.3:c.679G>A	p.Ala227Thr	p.A227T	ENST00000294008	NM_032444.2	227	Gct/Act																																																																															
CTCF	10664	MSKCC	GRCh37	16	67650751	67650751	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	211	277	0	ENST00000264010.4:c.1056G>C	p.Lys352Asn	p.K352N	ENST00000264010	NM_006565.3	352	aaG/aaC																																																																															
CDH1	999	MSKCC	GRCh37	16	68863643	68863643	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	189	261	0	ENST00000261769.5:c.2386del	p.Arg796GlyfsTer20	p.R796Gfs*20	ENST00000261769	NM_004360.3	794	gtC/gt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831936	72831936	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181722888		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	189	366	0	ENST00000268489.5:c.4645G>A	p.Val1549Ile	p.V1549I	ENST00000268489	NM_006885.3	1549	Gtc/Atc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969933	81969933	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752209691		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	225	327	0	ENST00000359376.3:c.3002G>A	p.Arg1001His	p.R1001H	ENST00000359376	NM_002661.3	1001	cGc/cAc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81979857	81979857	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764693069		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	57	293	0	ENST00000359376.3:c.3559C>T	p.Arg1187Trp	p.R1187W	ENST00000359376	NM_002661.3	1187	Cgg/Tgg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37680982	37680982	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	201	322	0	ENST00000447079.4:c.3151C>T	p.Arg1051Ter	p.R1051*	ENST00000447079	NM_015083.1	1051	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	249	481	1	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	13	318	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577103	7577103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	32	302	0	ENST00000269305.4:c.835G>T	p.Gly279Trp	p.G279W	ENST00000269305	NM_001126112.2	279	Ggg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	178	280	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	325	324	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56409239	56409239	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	17	253	0	ENST00000348428.3:c.1746G>T	p.Lys582Asn	p.K582N	ENST00000348428	NM_006785.3	582	aaG/aaT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143994	11143994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	175	326	0	ENST00000358026.2:c.3575G>A	p.Arg1192His	p.R1192H	ENST00000358026	NM_001128849.1	1192	cGc/cAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302857	15302857	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140914494		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	209	392	0	ENST00000263388.2:c.593C>T	p.Ala198Val	p.A198V	ENST00000263388	NM_000435.2	198	gCg/gTg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379697	17379697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	174	302	0	ENST00000359435.4:c.82C>T	p.Arg28Cys	p.R28C	ENST00000359435	NM_001033549.1	28	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211091	36211091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373603029		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	170	379	0	ENST00000222270.7:c.842G>A	p.Arg281His	p.R281H	ENST00000222270	NM_014727.1	281	cGt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213944	36213944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	197	333	0	ENST00000222270.7:c.2770C>T	p.Arg924Trp	p.R924W	ENST00000222270	NM_014727.1	924	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214068	36214068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	185	345	0	ENST00000222270.7:c.2894G>A	p.Arg965Gln	p.R965Q	ENST00000222270	NM_014727.1	965	cGa/cAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229342	36229342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	195	380	0	ENST00000222270.7:c.8032C>T	p.Arg2678Cys	p.R2678C	ENST00000222270	NM_014727.1	2678	Cgc/Tgc																																																																															
CD79A	973	MSKCC	GRCh37	19	42384773	42384773	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782714583		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	133	307	0	ENST00000221972.3:c.535G>A	p.Gly179Arg	p.G179R	ENST00000221972	NM_021601.3	179	Ggg/Agg																																																																															
INSR	3643	MSKCC	GRCh37	19	7267410	7267410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	202	266	0	ENST00000302850.5:c.598G>A	p.Val200Ile	p.V200I	ENST00000302850	NM_000208.2	200	Gtc/Atc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25468908	25468908	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	128	267	0	ENST00000264709.3:c.1455G>T	p.Gln485His	p.Q485H	ENST00000264709	NM_175629.2	485	caG/caT																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982356	25982356	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	136	179	0	ENST00000435504.4:c.934C>T	p.Arg312Ter	p.R312*	ENST00000435504		312	Cga/Tga																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027316	48027316	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63751127		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	167	328	1	ENST00000234420.5:c.2194C>T	p.Arg732Ter	p.R732*	ENST00000234420	NM_000179.2	732	Cga/Tga																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	203	340	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
REL	5966	MSKCC	GRCh37	2	61118940	61118940	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	185	352	0	ENST00000295025.8:c.133C>T	p.Arg45Ter	p.R45*	ENST00000295025	NM_002908.2	45	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021646	31021646	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1299423705		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	189	327	0	ENST00000375687.4:c.1645C>T	p.Arg549Cys	p.R549C	ENST00000375687	NM_015338.5	549	Cgt/Tgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101199	41101199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368237025		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	139	328	0	ENST00000373198.4:c.1157C>T	p.Pro386Leu	p.P386L	ENST00000373198	NM_133170.3	386	cCg/cTg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164557	36164557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	114	264	0	ENST00000300305.3:c.1318G>A	p.Ala440Thr	p.A440T	ENST00000300305		440	Gcg/Acg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44514780	44514780	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769567889		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	236	354	1	ENST00000291552.4:c.467G>A	p.Arg156His	p.R156H	ENST00000291552	NM_006758.2	156	cGt/cAt																																																																															
RAF1	5894	MSKCC	GRCh37	3	12647737	12647737	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773051648		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	134	230	0	ENST00000251849.4:c.643C>T	p.Arg215Cys	p.R215C	ENST00000251849	NM_002880.3	215	Cgt/Tgt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200723	128200723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	162	284	0	ENST00000341105.2:c.1082G>A	p.Arg361His	p.R361H	ENST00000341105	NM_032638.4	361	cGc/cAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557273	187557273	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	172	348	0	ENST00000441802.2:c.4089del	p.Phe1363LeufsTer5	p.F1363Lfs*5	ENST00000441802	NM_005245.3	1363	ttT/tt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630588	187630588	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	220	350	0	ENST00000441802.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000441802	NM_005245.3	132	Cga/Tga																																																																															
KIT	3815	MSKCC	GRCh37	4	55575630	55575630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	99	176	0	ENST00000288135.5:c.1156G>A	p.Glu386Lys	p.E386K	ENST00000288135	NM_000222.2	386	Gaa/Aaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286237	66286238	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	69	289	0	ENST00000273854.3:c.1448dup	p.Asn483LysfsTer21	p.N483Kfs*21	ENST00000273854	NM_004439.5	483	aac/aaAc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39002712	39002712	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780083937		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	77	257	0	ENST00000357387.3:c.317C>T	p.Ala106Val	p.A106V	ENST00000357387	NM_152756.3	106	gCg/gTg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382196	152382196	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747099645		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	117	302	0	ENST00000206249.3:c.1306C>T	p.Arg436Cys	p.R436C	ENST00000206249	NM_000125.3	436	Cgc/Tgc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287986	33287986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	68	383	0	ENST00000374542.5:c.1267G>T	p.Ala423Ser	p.A423S	ENST00000374542	NM_001141970.1	423	Gca/Tca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874710	151874710	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	220	351	0	ENST00000262189.6:c.7828C>T	p.Arg2610Ter	p.R2610*	ENST00000262189	NM_170606.2	2610	Cga/Tga																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737401	145737401	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371049072		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	165	334	0	ENST00000428558.2:c.3286C>T	p.Arg1096Cys	p.R1096C	ENST00000428558	NM_004260.3	1096	Cgc/Tgc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68981360	68981360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1474820456		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	74	196	0	ENST00000288368.4:c.1432G>A	p.Val478Met	p.V478M	ENST00000288368	NM_024870.2	478	Gtg/Atg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248136	110248136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	163	243	0	ENST00000374672.4:c.1336C>T	p.His446Tyr	p.H446Y	ENST00000374672	NM_004235.4	446	Cac/Tac																																																																															
ABL1	25	MSKCC	GRCh37	9	133750268	133750268	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	169	328	0	ENST00000318560.5:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000318560	NM_005157.4	367	Cga/Tga																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390716	139390716	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751367016		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	207	434	0	ENST00000277541.6:c.7475C>T	p.Ser2492Leu	p.S2492L	ENST00000277541	NM_017617.3	2492	tCg/tTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391896	139391896	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766745955		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	167	339	0	ENST00000277541.6:c.6295G>A	p.Asp2099Asn	p.D2099N	ENST00000277541	NM_017617.3	2099	Gac/Aac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412724	139412724	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770729642		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	177	337	0	ENST00000277541.6:c.1120G>A	p.Asp374Asn	p.D374N	ENST00000277541	NM_017617.3	374	Gac/Aac																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239927	98239927	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1438523462		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	150	255	1	ENST00000331920.6:c.1405G>A	p.Val469Met	p.V469M	ENST00000331920	NM_000264.3	469	Gtg/Atg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922223	39922223	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1168821846		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	146	146	0	ENST00000378444.4:c.3949C>T	p.Pro1317Ser	p.P1317S	ENST00000378444	NM_001123385.1	1317	Ccg/Tcg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041612	47041612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	228	208	0	ENST00000329236.7:c.1603C>T	p.Arg535Trp	p.R535W	ENST00000329236	NM_001204466.1	535	Cgg/Tgg																																																																															
MED12	9968	MSKCC	GRCh37	X	70348536	70348536	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387907360		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	197	163	0	ENST00000374080.3:c.3443G>A	p.Arg1148His	p.R1148H	ENST00000374080		1148	cGc/cAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11217276	11217276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	163	270	0	ENST00000361445.4:c.4402G>A	p.Asp1468Asn	p.D1468N	ENST00000361445	NM_004958.3	1468	Gac/Aac																																																																															
GNB1	2782	MSKCC	GRCh37	1	1747258	1747258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	168	296	0	ENST00000378609.4:c.140C>T	p.Thr47Met	p.T47M	ENST00000378609	NM_002074.3	47	aCg/aTg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206653451	206653451	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	195	360	0	ENST00000367120.3:c.1335G>T	p.Trp445Cys	p.W445C	ENST00000367120	NM_014002.3	445	tgG/tgT																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230459367	230459367	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	200	320	0	ENST00000525115.1:c.1173-1G>T		p.X391_splice	ENST00000525115		391																																																																																
CSF3R	1441	MSKCC	GRCh37	1	36938210	36938210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	44	304	0	ENST00000361632.4:c.751C>A	p.Leu251Met	p.L251M	ENST00000361632		251	Ctg/Atg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851834	63851834	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	172	382	0	ENST00000279873.7:c.2612C>A	p.Pro871His	p.P871H	ENST00000279873	NM_032199.2	871	cCt/cAt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343153	118343153	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142138730		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	182	280	0	ENST00000534358.1:c.1279C>T	p.Arg427Trp	p.R427W	ENST00000534358	NM_005933.3	427	Cgg/Tgg																																																																															
GAB2	9846	MSKCC	GRCh37	11	77991935	77991935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	173	304	0	ENST00000361507.4:c.88C>T	p.Arg30Cys	p.R30C	ENST00000361507	NM_080491.2	30	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420246	49420246	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	175	350	0	ENST00000301067.7:c.15503T>C	p.Ile5168Thr	p.I5168T	ENST00000301067	NM_003482.3	5168	aTc/aCc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495525	56495525	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	220	424	0	ENST00000267101.3:c.3715C>T	p.Gln1239Ter	p.Q1239*	ENST00000267101	NM_001982.3	1239	Cag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42054007	42054007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	17	226	0	ENST00000219905.7:c.7469G>A	p.Arg2490Gln	p.R2490Q	ENST00000219905	NM_001164273.1	2490	cGa/cAa																																																																															
USP8	9101	MSKCC	GRCh37	15	50774171	50774171	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	122	388	0	ENST00000307179.4:c.1712G>T	p.Arg571Met	p.R571M	ENST00000307179		571	aGg/aTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346862	89346862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	177	364	0	ENST00000301030.4:c.6088G>A	p.Ala2030Thr	p.A2030T	ENST00000301030	NM_001256183.1	2030	Gct/Act																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650842	37650842	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	44	299	0	ENST00000447079.4:c.2314A>G	p.Ile772Val	p.I772V	ENST00000447079	NM_015083.1	772	Att/Gtt																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38793826	38793826	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	161	285	0	ENST00000348513.6:c.157-2A>G		p.X53_splice	ENST00000348513	NM_003079.4	53																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15299820	15299820	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	174	370	0	ENST00000263388.2:c.1358T>C	p.Phe453Ser	p.F453S	ENST00000263388	NM_000435.2	453	tTc/tCc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223176	5223176	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372181642		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	41	323	0	ENST00000357368.4:c.2627C>T	p.Thr876Met	p.T876M	ENST00000357368	NM_002850.3	876	aCg/aTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566727	212566727	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	224	362	0	ENST00000342788.4:c.1454T>C	p.Ile485Thr	p.I485T	ENST00000342788	NM_005235.2	485	aTa/aCa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021647	31021647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	211	327	0	ENST00000375687.4:c.1646G>A	p.Arg549His	p.R549H	ENST00000375687	NM_015338.5	549	cGt/cAt																																																																															
SRC	6714	MSKCC	GRCh37	20	36012635	36012635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	143	297	0	ENST00000358208.4:c.79G>A	p.Ala27Thr	p.A27T	ENST00000358208		27	Gct/Act																																																																															
NF2	4771	MSKCC	GRCh37	22	30077514	30077514	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	34	327	0	ENST00000338641.4:c.1661G>T	p.Arg554Met	p.R554M	ENST00000338641	NM_000268.3	554	aGg/aTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41573695	41573695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	190	382	0	ENST00000263253.7:c.5980C>T	p.Pro1994Ser	p.P1994S	ENST00000263253	NM_001429.3	1994	Ccc/Tcc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185161234	185161234	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	31	275	0	ENST00000265026.3:c.661G>A	p.Gly221Ser	p.G221S	ENST00000265026	NM_004721.4	221	Ggt/Agt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266964	41266964	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200890083		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	201	365	1	ENST00000349496.5:c.635G>A	p.Arg212His	p.R212H	ENST00000349496	NM_001904.3	212	cGt/cAt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259212	89259212	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	57	328	0	ENST00000336596.2:c.356C>G	p.Thr119Arg	p.T119R	ENST00000336596	NM_005233.5	119	aCa/aGa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509960	187509960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	56	399	0	ENST00000441802.2:c.13553C>A	p.Pro4518His	p.P4518H	ENST00000441802	NM_005245.3	4518	cCt/cAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467933	66467933	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	118	333	0	ENST00000273854.3:c.336G>A	p.Trp112Ter	p.W112*	ENST00000273854	NM_004439.5	112	tgG/tgA																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202329	138202329	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201238112		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	190	419	0	ENST00000237289.4:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000237289	NM_001270507.1	749	cGg/cAg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100201	157100201	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	25	246	0	ENST00000346085.5:c.1138A>T	p.Met380Leu	p.M380L	ENST00000346085	NM_020732.3	380	Atg/Ttg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683697	162683697	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528661586		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	167	265	0	ENST00000366898.1:c.272C>T	p.Ala91Val	p.A91V	ENST00000366898	NM_004562.2	91	gCg/gTg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739712	145739712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	168	287	0	ENST00000428558.2:c.1739C>T	p.Thr580Ile	p.T580I	ENST00000428558	NM_004260.3	580	aCa/aTa																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128432144	128432144	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	116	241	0	ENST00000265960.3:c.302T>A	p.Ile101Asn	p.I101N	ENST00000265960	NM_001006617.1	101	aTc/aAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413048	139413048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	103	266	0	ENST00000277541.6:c.1094G>A	p.Arg365His	p.R365H	ENST00000277541	NM_017617.3	365	cGc/cAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376642	8376642	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369684559		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	34	262	0	ENST00000356435.5:c.4471G>A	p.Ala1491Thr	p.A1491T	ENST00000356435		1491	Gcc/Acc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449820	8449820	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	154	305	0	ENST00000356435.5:c.3893A>G	p.Asp1298Gly	p.D1298G	ENST00000356435		1298	gAc/gGc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227954	53227954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	180	169	0	ENST00000375401.3:c.2360G>T	p.Arg787Leu	p.R787L	ENST00000375401	NM_004187.3	787	cGg/cTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70347909	70347909	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1371947595		P-0081410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	236	184	0	ENST00000374080.3:c.3148C>T	p.Arg1050Cys	p.R1050C	ENST00000374080		1050	Cgc/Tgc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925316	114925317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769592153		P-0081412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	287	275	6	ENST00000543371.1:c.1403dup	p.Cys469ValfsTer8	p.C469Vfs*8	ENST00000543371	NM_001198531.1	465	aga/agAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0081412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	141	244	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	269	366	0	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0061727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	10	369	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965778	25965778	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	73	439	0	ENST00000435504.4:c.3428C>A	p.Ser1143Tyr	p.S1143Y	ENST00000435504		1143	tCt/tAt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965920	25965920	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0061727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	73	388	0	ENST00000435504.4:c.3286C>T	p.Gln1096Ter	p.Q1096*	ENST00000435504		1096	Cag/Tag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965928	25965928	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0061727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	75	398	0	ENST00000435504.4:c.3278C>G	p.Ser1093Ter	p.S1093*	ENST00000435504		1093	tCa/tGa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965971	25965971	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	63	408	0	ENST00000435504.4:c.3235C>G	p.Leu1079Val	p.L1079V	ENST00000435504		1079	Ctt/Gtt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966171	25966171	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	87	481	0	ENST00000435504.4:c.3035C>G	p.Ser1012Cys	p.S1012C	ENST00000435504		1012	tCc/tGc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966013	25966013	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	53	446	0	ENST00000435504.4:c.3193C>G	p.Gln1065Glu	p.Q1065E	ENST00000435504		1065	Cag/Gag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965964	25965964	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	67	420	0	ENST00000435504.4:c.3242C>A	p.Ser1081Ter	p.S1081*	ENST00000435504		1081	tCa/tAa																																																																															
REST	5978	MSKCC	GRCh37	4	57777664	57777664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	19	324	0	ENST00000309042.7:c.860G>A	p.Arg287Lys	p.R287K	ENST00000309042	NM_005612.4	287	aGa/aAa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965715	25965715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	60	439	0	ENST00000435504.4:c.3491C>T	p.Thr1164Ile	p.T1164I	ENST00000435504		1164	aCa/aTa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185190897	185190897	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	34	487	0	ENST00000265026.3:c.1778G>C	p.Gly593Ala	p.G593A	ENST00000265026	NM_004721.4	593	gGg/gCg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966375	25966375	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	14	488	0	ENST00000435504.4:c.2831C>G	p.Ser944Cys	p.S944C	ENST00000435504		944	tCt/tGt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966265	25966265	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	18	489	0	ENST00000435504.4:c.2941C>G	p.Pro981Ala	p.P981A	ENST00000435504		981	Cca/Gca																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271754	38271754	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	31	478	0	ENST00000425967.3:c.2195A>G	p.Tyr732Cys	p.Y732C	ENST00000425967	NM_001174067.1	732	tAc/tGc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965859	25965859	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	83	402	0	ENST00000435504.4:c.3347C>G	p.Ser1116Cys	p.S1116C	ENST00000435504		1116	tCc/tGc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966355	25966355	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	17	487	0	ENST00000435504.4:c.2851C>G	p.Pro951Ala	p.P951A	ENST00000435504		951	Cct/Gct																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965196	25965196	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	96	457	0	ENST00000435504.4:c.4010C>G	p.Ser1337Cys	p.S1337C	ENST00000435504		1337	tCt/tGt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965124	25965124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	74	436	0	ENST00000435504.4:c.4082C>T	p.Ser1361Leu	p.S1361L	ENST00000435504		1361	tCa/tTa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966118	25966118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	84	450	0	ENST00000435504.4:c.3088C>T	p.Pro1030Ser	p.P1030S	ENST00000435504		1030	Ccc/Tcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229199	36229199	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0061727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	21	512	0	ENST00000222270.7:c.7889T>A	p.Met2630Lys	p.M2630K	ENST00000222270	NM_014727.1	2630	aTg/aAg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965213	25965213	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	99	447	0	ENST00000435504.4:c.3993C>G	p.Ile1331Met	p.I1331M	ENST00000435504		1331	atC/atG																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965949	25965952	+	frameshift_variant	Frame_Shift_Del	DEL	GAGG	GAGG	AA			P-0061727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	68	411	0	ENST00000435504.4:c.3254_3257delinsTT	p.Pro1085LeufsTer54	p.P1085Lfs*54	ENST00000435504		1085	cCCTCa/cTTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0071125-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	211	322	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0071125-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			953	140	734	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0071125-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			485	167	484	0	ENST00000269305.4:c.783-1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
JAK3	3718	MSKCC	GRCh37	19	17941316	17941316	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749169776		P-0071125-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			572	83	599	0	ENST00000458235.1:c.3092C>T	p.Ser1031Leu	p.S1031L	ENST00000458235	NM_000215.3	1031	tCg/tTg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098959	178098959	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071125-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			450	309	491	0	ENST00000397062.3:c.86A>T	p.Asp29Val	p.D29V	ENST00000397062	NM_006164.4	29	gAt/gTt																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150902484	150902484	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071125-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			648	96	513	0	ENST00000271640.5:c.302C>G	p.Ser101Cys	p.S101C	ENST00000271640	NM_001145415.1	101	tCc/tGc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612383	1612383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071125-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			661	121	560	0	ENST00000344749.5:c.1636G>A	p.Glu546Lys	p.E546K	ENST00000344749	NM_001136139.2	546	Gag/Aag																																																																															
NF1	4763	MSKCC	GRCh37	17	29560109	29560109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071125-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			679	204	549	0	ENST00000358273.4:c.3586C>T	p.Leu1196Phe	p.L1196F	ENST00000358273	NM_001042492.2	1196	Ctt/Ttt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505538	25505539	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0071125-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			494	309	539	0	ENST00000264709.3:c.219dup	p.Lys74GlnfsTer25	p.K74Qfs*25	ENST00000264709	NM_175629.2	73	-/C																																																																															
NUF2	83540	MSKCC	GRCh37	1	163309266	163309266	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs144627000		P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	29	363	0	ENST00000271452.3:c.605C>T	p.Thr202Met	p.T202M	ENST00000271452	NM_145697.2	202	aCg/aTg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983070	201983070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			711	46	506	1	ENST00000359651.3:c.919C>T	p.Arg307Cys	p.R307C	ENST00000359651		307	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	42	527	2	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
ATM	472	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781894		P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	55	514	0	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt																																																																															
HRAS	3265	MSKCC	GRCh37	11	533535	533535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			794	53	624	0	ENST00000311189.7:c.368G>A	p.Arg123His	p.R123H	ENST00000311189		123	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	21	258	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	24	261	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			767	47	617	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441845	49441845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	53	449	0	ENST00000301067.7:c.4139G>A	p.Cys1380Tyr	p.C1380Y	ENST00000301067	NM_003482.3	1380	tGt/tAt																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			786	48	423	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			776	66	562	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81990400	81990400	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370547009		P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			775	49	515	0	ENST00000359376.3:c.3671G>A	p.Arg1224His	p.R1224H	ENST00000359376	NM_002661.3	1224	cGc/cAc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131273	17131273	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779900587		P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	44	513	0	ENST00000285071.4:c.179C>T	p.Ala60Val	p.A60V	ENST00000285071	NM_144997.5	60	gCg/gTg																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679887	33679887	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200734680		P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	43	549	0	ENST00000308377.4:c.2194C>T	p.Arg732Cys	p.R732C	ENST00000308377	NM_152270.3	732	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579547	7579547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	37	553	0	ENST00000269305.4:c.140del	p.Pro47ArgfsTer76	p.P47Rfs*76	ENST00000269305	NM_001126112.2	47	cCg/cg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	43	355	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600425	10600425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			823	57	593	1	ENST00000171111.5:c.1430del	p.Gly477AlafsTer23	p.G477Afs*23	ENST00000171111	NM_203500.1	477	gGc/gc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353819	15353819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	22	261	0	ENST00000263377.2:c.3061del	p.His1021IlefsTer47	p.H1021Ifs*47	ENST00000263377	NM_058243.2	1021	Cat/at																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	40	353	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
CASP8	841	MSKCC	GRCh37	2	202150030	202150030	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs931648756		P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			819	49	467	0	ENST00000358485.4:c.1471C>T	p.Arg491Ter	p.R491*	ENST00000358485	NM_001080125.1	491	Cga/Tga																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	30	424	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213317	39213317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	54	567	0	ENST00000402219.2:c.3650G>A	p.Arg1217Gln	p.R1217Q	ENST00000402219	NM_005633.3	1217	cGa/cAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	36	467	1	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
EP300	2033	MSKCC	GRCh37	22	41566524	41566525	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	42	435	0	ENST00000263253.7:c.4408dup	p.Met1470AsnfsTer3	p.M1470Nfs*3	ENST00000263253	NM_001429.3	1467	-/A																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52588798	52588798	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	91	486	1	ENST00000394830.3:c.4230del	p.Pro1411LeufsTer21	p.P1411Lfs*21	ENST00000394830	NM_018313.4	1410	ggG/gg																																																																															
MSH3	4437	MSKCC	GRCh37	5	80064779	80064780	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	37	358	0	ENST00000265081.6:c.2216dup	p.Asn739LysfsTer29	p.N739Kfs*29	ENST00000265081	NM_002439.4	737	cta/ctAa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188995	32188995	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753307747		P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			767	71	621	0	ENST00000375023.3:c.559G>A	p.Glu187Lys	p.E187K	ENST00000375023	NM_004557.3	187	Gag/Aag																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026514	6026514	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs63750451		P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	28	302	0	ENST00000265849.7:c.1882C>T	p.Arg628Ter	p.R628*	ENST00000265849	NM_000535.5	628	Cga/Tga																																																																															
TSC1	7248	MSKCC	GRCh37	9	135804195	135804195	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141736779		P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			736	58	508	0	ENST00000298552.3:c.65G>A	p.Arg22Gln	p.R22Q	ENST00000298552	NM_001162426.1	22	cGg/cAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405624	139405624	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	31	410	0	ENST00000277541.6:c.2567T>C	p.Val856Ala	p.V856A	ENST00000277541	NM_017617.3	856	gTc/gCc																																																																															
SYK	6850	MSKCC	GRCh37	9	93606273	93606273	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	34	464	2	ENST00000375746.1:c.98del	p.Gly33AlafsTer2	p.G33Afs*2	ENST00000375746	NM_001174167.1	31	caG/ca																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211539	98211539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772537644		P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	46	485	0	ENST00000331920.6:c.3616C>T	p.Arg1206Cys	p.R1206C	ENST00000331920	NM_000264.3	1206	Cgc/Tgc																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231487314	231487314	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	42	427	0	ENST00000295050.7:c.715A>G	p.Lys239Glu	p.K239E	ENST00000295050	NM_032018.5	239	Aaa/Gaa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114799869	114799869	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	47	343	0	ENST00000543371.1:c.536C>T	p.Ser179Leu	p.S179L	ENST00000543371	NM_001198531.1	179	tCa/tTa																																																																															
CCND1	595	MSKCC	GRCh37	11	69462836	69462836	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	51	496	0	ENST00000227507.2:c.649C>A	p.Leu217Met	p.L217M	ENST00000227507	NM_053056.2	217	Ctg/Atg																																																																															
RAB35	11021	MSKCC	GRCh37	12	120541685	120541685	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			767	50	470	0	ENST00000229340.5:c.172A>C	p.Lys58Gln	p.K58Q	ENST00000229340	NM_006861.6	58	Aag/Cag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060610	38060610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			885	70	627	0	ENST00000250448.2:c.1379A>G	p.Tyr460Cys	p.Y460C	ENST00000250448	NM_004496.3	460	tAc/tGc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061577	38061577	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	40	501	0	ENST00000250448.2:c.412A>G	p.Met138Val	p.M138V	ENST00000250448	NM_004496.3	138	Atg/Gtg																																																																															
BLM	641	MSKCC	GRCh37	15	91328237	91328237	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	161	451	0	ENST00000355112.3:c.2749G>T	p.Ala917Ser	p.A917S	ENST00000355112	NM_000057.2	917	Gct/Tct																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827949	72827950	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	50	527	0	ENST00000268489.5:c.8631dup	p.Ala2878SerfsTer8	p.A2878Sfs*8	ENST00000268489	NM_006885.3	2877	-/A																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974934	15974934	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	36	452	0	ENST00000268712.3:c.3941A>G	p.Tyr1314Cys	p.Y1314C	ENST00000268712	NM_006311.3	1314	tAt/tGt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448583	89448583	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			774	62	475	0	ENST00000336596.2:c.1547G>C	p.Gly516Ala	p.G516A	ENST00000336596	NM_005233.5	516	gGa/gCa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117866655	117866655	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	36	350	0	ENST00000297338.2:c.990del	p.Glu331SerfsTer30	p.E331Sfs*30	ENST00000297338	NM_006265.2	330	aaA/aa																																																																															
ABL1	25	MSKCC	GRCh37	9	133759946	133759946	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	40	439	0	ENST00000318560.5:c.2269A>G	p.Ser757Gly	p.S757G	ENST00000318560	NM_005157.4	757	Agt/Ggt																																																																															
ABL1	25	MSKCC	GRCh37	9	133760679	133760679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	53	599	0	ENST00000318560.5:c.3002C>T	p.Ala1001Val	p.A1001V	ENST00000318560	NM_005157.4	1001	gCc/gTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395219	139395219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	42	534	0	ENST00000277541.6:c.5719C>T	p.Pro1907Ser	p.P1907S	ENST00000277541	NM_017617.3	1907	Ccg/Tcg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2047295	2047295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	27	110	1	ENST00000349721.2:c.857G>A	p.Arg286Gln	p.R286Q	ENST00000349721	NM_003070.3	286	cGg/cAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47004910	47004910	+	intron_variant	Intron	SNP	G	G	C			P-0080149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1062	68	652	0	ENST00000329236.7:c.-126+26G>C		p.*42*	ENST00000329236	NM_001204466.1																																																																																	
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACCCCT			P-0080706-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1149	3581	694	28	ENST00000275493.2:c.2316_2317insTACAACCCC	p.Pro772_His773insTyrAsnPro	p.P772_H773insYNP	ENST00000275493	NM_005228.3	770	gac/gACAACCCCTac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249019	55249019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080706-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			258	4190	702	29	ENST00000275493.2:c.2317C>T	p.His773Tyr	p.H773Y	ENST00000275493	NM_005228.3	773	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7590693	7590693	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0080706-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			214	134	660	0	ENST00000269305.4:c.-29+2T>G		p.X10_splice	ENST00000269305	NM_001126112.2	10																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0081035-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			240	46	356	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098975	178098975	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1328994103		P-0081035-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			395	79	549	0	ENST00000397062.3:c.70T>C	p.Trp24Arg	p.W24R	ENST00000397062	NM_006164.4	24	Tgg/Cgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs45476696		P-0081035-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			424	49	566	0	ENST00000304494.5:c.457G>A	p.Asp153Asn	p.D153N	ENST00000304494	NM_000077.4	153	Gac/Aac																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150923359	150923359	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0081035-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			595	79	630	0	ENST00000271640.5:c.2006A>C	p.Lys669Thr	p.K669T	ENST00000271640	NM_001145415.1	669	aAg/aCg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023414	27023418	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGG	GGCGG	-			P-0081035-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			467	25	535	0	ENST00000324856.7:c.520_524del	p.Gly174ThrfsTer224	p.G174Tfs*224	ENST00000324856	NM_006015.4	174	GGCGGa/a																																																																															
MGA	23269	MSKCC	GRCh37	15	42041833	42041833	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081035-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			464	26	694	0	ENST00000219905.7:c.6028C>A	p.Gln2010Lys	p.Q2010K	ENST00000219905	NM_001164273.1	2010	Caa/Aaa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88669560	88669560	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081035-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			358	23	541	0	ENST00000360948.2:c.1338G>C	p.Leu446Phe	p.L446F	ENST00000360948	NM_001012338.2	446	ttG/ttC																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265264	10265264	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0081035-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			676	41	702	0	ENST00000340748.4:c.1782G>T	p.Gln594His	p.Q594H	ENST00000340748		594	caG/caT																																																																															
STK11	6794	MSKCC	GRCh37	19	1207028	1207038	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCAAGCGG	GCCGCAAGCGG	-			P-0081035-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			532	135	638	0	ENST00000326873.7:c.119_129del	p.Arg40GlnfsTer119	p.R40Qfs*119	ENST00000326873	NM_000455.4	39	cGCCGCAAGCGG/c																																																																															
PMS1	5378	MSKCC	GRCh37	2	190741996	190741996	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0081035-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			256	17	445	0	ENST00000441310.2:c.2635-2A>C		p.X879_splice	ENST00000441310	NM_000534.4	879																																																																																
DNMT3B	1789	MSKCC	GRCh37	20	31374346	31374346	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081035-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			567	100	681	0	ENST00000328111.2:c.345G>T	p.Glu115Asp	p.E115D	ENST00000328111	NM_006892.3	115	gaG/gaT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790143	40790143	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081035-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			491	71	615	0	ENST00000373198.4:c.2588C>A	p.Thr863Lys	p.T863K	ENST00000373198	NM_133170.3	863	aCg/aAg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458619	12458619	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081035-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			399	33	553	0	ENST00000287820.6:c.1236G>C	p.Leu412Phe	p.L412F	ENST00000287820	NM_015869.4	412	ttG/ttC																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164795	47164795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081035-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			457	41	600	0	ENST00000409792.3:c.1331C>T	p.Thr444Met	p.T444M	ENST00000409792	NM_014159.6	444	aCg/aTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157431654	157431654	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081035-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			468	94	586	0	ENST00000346085.5:c.2332del	p.His778IlefsTer4	p.H778Ifs*4	ENST00000346085	NM_020732.3	777	tCc/tc																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793503	89793503	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081035-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			426	28	515	0	ENST00000336032.3:c.572A>G	p.Lys191Arg	p.K191R	ENST00000336032	NM_006813.2	191	aAa/aGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0081064-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			531	50	503	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081064-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			251	34	304	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EP300	2033	MSKCC	GRCh37	22	41573164	41573164	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081064-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			541	45	570	0	ENST00000263253.7:c.5449C>T	p.Gln1817Ter	p.Q1817*	ENST00000263253	NM_001429.3	1817	Cag/Tag																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101908775	101908775	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081064-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			356	44	393	0	ENST00000374994.4:c.1142del	p.Pro381LeufsTer8	p.P381Lfs*8	ENST00000374994	NM_004612.2	380	gCc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0081315-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	208	710	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0081315-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	56	497	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852092	63852092	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0081315-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			739	175	622	0	ENST00000279873.7:c.2870T>A	p.Val957Glu	p.V957E	ENST00000279873	NM_032199.2	957	gTa/gAa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21619898	21619898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081315-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			797	179	611	0	ENST00000382592.4:c.268G>A	p.Glu90Lys	p.E90K	ENST00000382592	NM_014572.2	90	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0081318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			718	130	576	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112154991	112154991	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs559510809		P-0081318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	51	446	0	ENST00000257430.4:c.1262G>A	p.Trp421Ter	p.W421*	ENST00000257430	NM_000038.5	421	tGg/tAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653820	89653820	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs869312778		P-0081318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	21	331	0	ENST00000371953.3:c.118G>T	p.Glu40Ter	p.E40*	ENST00000371953	NM_000314.4	40	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	24	342	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46298742	46298743	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0081318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	23	332	0	ENST00000334344.6:c.5389_5390del	p.Leu1797IlefsTer6	p.L1797Ifs*6	ENST00000334344	NM_152641.2	1797	TTa/a																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0081326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	34	309	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012474	29012474	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0081326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	15	466	0	ENST00000282397.4:c.397A>T	p.Arg133Ter	p.R133*	ENST00000282397	NM_002019.4	133	Aga/Tga																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346365	73346365	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	13	395	0	ENST00000377767.4:c.1435G>C	p.Asp479His	p.D479H	ENST00000377767	NM_014953.3	479	Gac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0081326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	13	676	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28626756	28626756	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	24	470	0	ENST00000241453.7:c.540C>A	p.Asp180Glu	p.D180E	ENST00000241453	NM_004119.2	180	gaC/gaA																																																																															
NUP93	9688	MSKCC	GRCh37	16	56867268	56867268	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	37	485	0	ENST00000308159.5:c.1487T>C	p.Leu496Pro	p.L496P	ENST00000308159	NM_014669.4	496	cTg/cCg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67660581	67660581	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	21	501	0	ENST00000264010.4:c.1481G>C	p.Arg494Pro	p.R494P	ENST00000264010	NM_006565.3	494	cGc/cCc																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544975	86544975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	15	571	0	ENST00000262426.4:c.800C>A	p.Ala267Glu	p.A267E	ENST00000262426	NM_001451.2	267	gCg/gAg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46609681	46609681	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0081326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	37	590	0	ENST00000263734.3:c.2405A>T	p.Gln802Leu	p.Q802L	ENST00000263734	NM_001430.4	802	cAg/cTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528681	8528681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	30	606	0	ENST00000356435.5:c.451G>T	p.Gly151Cys	p.G151C	ENST00000356435		151	Ggt/Tgt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410618	63410618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	20	623	0	ENST00000330258.3:c.2549C>T	p.Ala850Val	p.A850V	ENST00000330258	NM_152424.3	850	gCc/gTc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519969		P-0081328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	78	451	0	ENST00000347630.2:c.392G>C	p.Trp131Ser	p.W131S	ENST00000347630	NM_001007230.1	131	tGg/tCg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117712	70117714	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs778226772		P-0081328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	51	772	0	ENST00000245479.2:c.184_186del	p.Lys62del	p.K62del	ENST00000245479	NM_000346.3	60	ctGAAg/ctg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740504	58740504	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	68	448	0	ENST00000305921.3:c.1409del	p.Asp470ValfsTer13	p.D470Vfs*13	ENST00000305921	NM_003620.3	470	gAt/gt																																																																															
APC	324	MSKCC	GRCh37	5	112163696	112163697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0081328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	26	322	0	ENST00000257430.4:c.1620_1621insAA	p.Gln541AsnfsTer9	p.Q541Nfs*9	ENST00000257430	NM_000038.5	540	tta/ttAAa																																																																															
MGA	23269	MSKCC	GRCh37	15	42058342	42058342	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201470885		P-0081338-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	33	481	0	ENST00000219905.7:c.8062G>A	p.Val2688Ile	p.V2688I	ENST00000219905	NM_001164273.1	2688	Gtc/Atc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713822	30713828	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAATA	TCCAATA	-			P-0081338-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	51	619	0	ENST00000359013.4:c.1225_1231del	p.Asn409SerfsTer2	p.N409Sfs*2	ENST00000359013	NM_001024847.2	408	TCCAATAtc/tc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727451	66727451	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519729		P-0081340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	65	378	0	ENST00000307102.5:c.167A>C	p.Gln56Pro	p.Q56P	ENST00000307102	NM_002755.3	56	cAg/cCg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625258	69625259	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0081340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	49	431	0	ENST00000334134.2:c.534_535delinsAA	p.Phe178_Leu179delinsLeuMet	p.F178_L179delinsLM	ENST00000334134	NM_005247.2	178	ttCCtg/ttAAtg																																																																															
YES1	7525	MSKCC	GRCh37	18	743340	743340	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0081340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	85	358	0	ENST00000314574.4:c.800A>C	p.Lys267Thr	p.K267T	ENST00000314574	NM_005433.3	267	aAa/aCa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245651	46245651	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0081340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	101	451	0	ENST00000334344.6:c.3745G>T	p.Glu1249Ter	p.E1249*	ENST00000334344	NM_152641.2	1249	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7573998	7573999	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCTCGGAACA			P-0081340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	43	362	0	ENST00000269305.4:c.1019_1028dup	p.Glu343AspfsTer7	p.E343Dfs*7	ENST00000269305	NM_001126112.2	343	gag/gaTGTTCCGAGAg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430654	78430710	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTGTTACAATCATAGAAATAATATATATTAACAAAAGAAGTGGACAAAAATGGGCAT	CTGTTACAATCATAGAAATAATATATATTAACAAAAGAAGTGGACAAAAATGGGCAT	-			P-0081340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	83	347	0	ENST00000370768.2:c.636+43_637-1del		p.X212_splice	ENST00000370768	NM_003902.3	212																																																																																
FAT1	2195	MSKCC	GRCh37	4	187538949	187538949	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	81	551	0	ENST00000441802.2:c.8791G>T	p.Asp2931Tyr	p.D2931Y	ENST00000441802	NM_005245.3	2931	Gac/Tac																																																																															
BRCA1	672	MSKCC	GRCh37	17	41251830	41251830	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80357264		P-0081352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	169	497	0	ENST00000357654.3:c.509G>A	p.Arg170Gln	p.R170Q	ENST00000357654	NM_007294.3	170	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0081352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	145	482	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0081352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	26	630	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0081352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	12	539	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0081365-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	294	637	1	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964370	70964370	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0081365-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			764	88	377	0	ENST00000276594.2:c.1658A>T	p.Lys553Ile	p.K553I	ENST00000276594	NM_024504.3	553	aAa/aTa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635247	87635247	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081365-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	205	412	0	ENST00000277120.3:c.2299A>G	p.Lys767Glu	p.K767E	ENST00000277120		767	Aaa/Gaa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224289	36224289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081365-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1748	212	691	0	ENST00000222270.7:c.6839G>C	p.Arg2280Thr	p.R2280T	ENST00000222270	NM_014727.1	2280	aGg/aCg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276802	15276814	+	frameshift_variant	Frame_Shift_Del	DEL	GATGATGCTAGCT	GATGATGCTAGCT	-			P-0081365-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1021	152	618	0	ENST00000263388.2:c.5451_5463del	p.Ala1818ProfsTer3	p.A1818Pfs*3	ENST00000263388	NM_000435.2	1817	tcAGCTAGCATCATC/tc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59770790	59770790	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0081365-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	159	360	0	ENST00000259008.2:c.2575+1G>C		p.X859_splice	ENST00000259008	NM_032043.2	859																																																																																
ROS1	6098	MSKCC	GRCh37	6	117679106	117679106	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0081365-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	162	435	0	ENST00000368508.3:c.3715T>A	p.Tyr1239Asn	p.Y1239N	ENST00000368508	NM_002944.2	1239	Tac/Aac																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804258	46804258	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081365-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	438	522	0	ENST00000290295.7:c.749C>G	p.Ser250Trp	p.S250W	ENST00000290295	NM_006361.5	250	tCg/tGg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52724304	52724304	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs141690261		P-0081365-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1010	175	658	0	ENST00000322088.6:c.1436A>G	p.His479Arg	p.H479R	ENST00000322088	NM_014225.5	479	cAt/cGt																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749459	41749459	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081365-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	231	403	0	ENST00000226382.2:c.336G>C	p.Glu112Asp	p.E112D	ENST00000226382	NM_003924.3	112	gaG/gaC																																																																															
IRF4	3662	MSKCC	GRCh37	6	401490	401490	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081365-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1131	270	567	0	ENST00000380956.4:c.812C>A	p.Pro271His	p.P271H	ENST00000380956	NM_001195286.1	271	cCc/cAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520012	106520012	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs775329237		P-0081365-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	109	408	0	ENST00000359195.3:c.2440G>T	p.Glu814Ter	p.E814*	ENST00000359195	NM_002649.2	814	Gag/Tag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65307251	65307251	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081365-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	196	489	0	ENST00000342505.4:c.2437G>C	p.Val813Leu	p.V813L	ENST00000342505	NM_002227.2	813	Gtg/Ctg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244482	46244482	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081365-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	41	577	0	ENST00000334344.6:c.2576C>A	p.Ser859Tyr	p.S859Y	ENST00000334344	NM_152641.2	859	tCc/tAc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519970		P-0081367-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	189	488	0	ENST00000347630.2:c.393G>T	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgT																																																																															
TERT	7015	MSKCC	GRCh37	5	1264586	1264586	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs547377569		P-0081367-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	123	582	0	ENST00000310581.5:c.2776G>A	p.Gly926Ser	p.G926S	ENST00000310581	NM_198253.2	926	Ggc/Agc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43705433	43705433	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0081367-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	29	514	0	ENST00000382044.4:c.5189A>C	p.Asn1730Thr	p.N1730T	ENST00000382044	NM_001141980.1	1730	aAc/aCc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	45	659	0	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	42	652	4	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	42	534	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112173669	112173670	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	44	609	0	ENST00000257430.4:c.2379_2380del	p.Tyr796TrpfsTer2	p.Y796Wfs*2	ENST00000257430	NM_000038.5	793	cAA/c																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	51	608	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	39	682	0	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47635539	47635539	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs267607914		P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	33	389	0	ENST00000233146.2:c.212-1G>A		p.X71_splice	ENST00000233146	NM_000251.2	71																																																																																
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852217		P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	41	349	0	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272336	15272337	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs771517374		P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			754	59	774	0	ENST00000263388.2:c.6102dup	p.Gly2035ArgfsTer60	p.G2035Rfs*60	ENST00000263388	NM_000435.2	2034	-/C																																																																															
KIT	3815	MSKCC	GRCh37	4	55564477	55564477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	41	534	1	ENST00000288135.5:c.365G>A	p.Arg122His	p.R122H	ENST00000288135	NM_000222.2	122	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106662	27106662	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			755	47	770	0	ENST00000324856.7:c.6273G>A	p.Trp2091Ter	p.W2091*	ENST00000324856	NM_006015.4	2091	tgG/tgA																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866689	37866689	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149210045		P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			745	48	755	0	ENST00000269571.5:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269571		286	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578374	7578374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501206		P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			777	58	762	0	ENST00000269305.4:c.556G>A	p.Asp186Asn	p.D186N	ENST00000269305	NM_001126112.2	186	Gat/Aat																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	39	674	0	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025856	48025857	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	35	550	0	ENST00000234420.5:c.741dup	p.Arg248ThrfsTer8	p.R248Tfs*8	ENST00000234420	NM_000179.2	245	ata/atAa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43730536	43730536	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	35	520	0	ENST00000382044.4:c.3177del	p.Thr1060ProfsTer36	p.T1060Pfs*36	ENST00000382044	NM_001141980.1	1059	ccC/cc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202232	138202232	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs561168863		P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	41	614	1	ENST00000237289.4:c.2149G>A	p.Ala717Thr	p.A717T	ENST00000237289	NM_001270507.1	717	Gcc/Acc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276798	15276798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763602970		P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	43	747	0	ENST00000263388.2:c.5467G>A	p.Asp1823Asn	p.D1823N	ENST00000263388	NM_000435.2	1823	Gac/Aac																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458306	120458306	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370648780		P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			835	59	902	0	ENST00000256646.2:c.7039C>T	p.Arg2347Cys	p.R2347C	ENST00000256646	NM_024408.3	2347	Cgt/Tgt																																																																															
TET2	54790	MSKCC	GRCh37	4	106156139	106156139	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755979073		P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			743	56	702	0	ENST00000380013.4:c.1040C>T	p.Ala347Val	p.A347V	ENST00000380013	NM_001127208.2	347	gCg/gTg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112891121	112891121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507521		P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	46	640	0	ENST00000351677.2:c.455G>A	p.Arg152His	p.R152H	ENST00000351677	NM_002834.3	152	cGc/cAc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30133247	30133247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	43	699	1	ENST00000263025.4:c.251G>A	p.Arg84His	p.R84H	ENST00000263025	NM_002746.2	84	cGc/cAc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650559	48650559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	60	443	0	ENST00000376670.3:c.529G>A	p.Gly177Arg	p.G177R	ENST00000376670	NM_002049.3	177	Ggg/Agg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137029	64137029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	37	595	0	ENST00000334205.4:c.1540G>A	p.Val514Met	p.V514M	ENST00000334205	NM_003942.2	514	Gtg/Atg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41408924	41408924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778928297		P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	35	588	1	ENST00000373198.4:c.502G>A	p.Val168Ile	p.V168I	ENST00000373198	NM_133170.3	168	Gtc/Atc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169952	32169952	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs151325272		P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	33	644	0	ENST00000375023.3:c.3656G>T	p.Arg1219Leu	p.R1219L	ENST00000375023	NM_004557.3	1219	cGg/cTg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308146	30308146	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs574899763		P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	41	637	0	ENST00000262643.3:c.283C>T	p.Arg95Trp	p.R95W	ENST00000262643	NM_001238.2	95	Cgg/Tgg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31511261	31511261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	36	424	0	ENST00000344624.3:c.1313C>T	p.Thr438Met	p.T438M	ENST00000344624		438	aCg/aTg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022466	12022466	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201820837		P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			825	49	792	0	ENST00000396373.4:c.572G>A	p.Arg191Gln	p.R191Q	ENST00000396373	NM_001987.4	191	cGg/cAg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18650665	18650665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	25	383	0	ENST00000266497.5:c.2876C>T	p.Ser959Phe	p.S959F	ENST00000266497		959	tCc/tTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984501	72984501	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	43	648	0	ENST00000268489.5:c.3083G>T	p.Arg1028Met	p.R1028M	ENST00000268489	NM_006885.3	1028	aGg/aTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1294646	1294646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	37	748	0	ENST00000310581.5:c.355G>A	p.Val119Met	p.V119M	ENST00000310581	NM_198253.2	119	Gtg/Atg																																																																															
MET	4233	MSKCC	GRCh37	7	116411691	116411692	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			760	47	665	0	ENST00000397752.3:c.2873_2874del	p.Arg958LysfsTer4	p.R958Kfs*4	ENST00000397752	NM_000245.2	957	aAG/a																																																																															
FLCN	201163	MSKCC	GRCh37	17	17122437	17122437	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777456756		P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	48	650	0	ENST00000285071.4:c.958C>T	p.Arg320Trp	p.R320W	ENST00000285071	NM_144997.5	320	Cgg/Tgg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150923023	150923023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	46	540	0	ENST00000271640.5:c.1670G>A	p.Arg557Gln	p.R557Q	ENST00000271640	NM_001145415.1	557	cGg/cAg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206845	36206845	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs878854468		P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	33	582	0	ENST00000300305.3:c.667G>A	p.Glu223Lys	p.E223K	ENST00000300305		223	Gag/Aag																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703506	47703506	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	35	527	0	ENST00000233146.2:c.2006G>T	p.Gly669Val	p.G669V	ENST00000233146	NM_000251.2	669	gGc/gTc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250367	110250367	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	49	626	0	ENST00000374672.4:c.308T>C	p.Leu103Pro	p.L103P	ENST00000374672	NM_004235.4	103	cTg/cCg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25468930	25468930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	37	503	0	ENST00000264709.3:c.1433G>A	p.Arg478Gln	p.R478Q	ENST00000264709	NM_175629.2	478	cGg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891590	151891590	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778490		P-0081376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	39	574	0	ENST00000262189.6:c.4442G>A	p.Arg1481Gln	p.R1481Q	ENST00000262189	NM_170606.2	1481	cGa/cAa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	208	881	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788617	3788617	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519884		P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	21	495	0	ENST00000262367.5:c.4337G>A	p.Arg1446His	p.R1446H	ENST00000262367	NM_004380.2	1446	cGc/cAc																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	38	627	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214604	5214604	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116515629		P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	107	798	0	ENST00000357368.4:c.4462G>A	p.Val1488Ile	p.V1488I	ENST00000357368	NM_002850.3	1488	Gtc/Atc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	49	414	0	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at																																																																															
FLT3	2322	MSKCC	GRCh37	13	28578215	28578216	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	201	603	0	ENST00000241453.7:c.2955_2956del	p.Pro986AlafsTer27	p.P986Afs*27	ENST00000241453	NM_004119.2	985	tcTCcg/tccg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	80	807	3	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023769	27023769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	156	644	0	ENST00000324856.7:c.879del	p.Thr294ProfsTer69	p.T294Pfs*69	ENST00000324856	NM_006015.4	292	aCc/ac																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	125	641	10	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	230	740	9	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	66	555	2	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984704	72984704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	111	760	0	ENST00000268489.5:c.2880G>A	p.Met960Ile	p.M960I	ENST00000268489	NM_006885.3	960	atG/atA																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030692	48030692	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	123	643	2	ENST00000234420.5:c.3312del	p.Phe1104LeufsTer11	p.F1104Lfs*11	ENST00000234420	NM_000179.2	1102	acT/ac																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	120	649	8	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
B2M	567	MSKCC	GRCh37	15	45003779	45003779	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	50	642	0	ENST00000558401.1:c.35T>C	p.Leu12Pro	p.L12P	ENST00000558401	NM_004048.2	12	cTa/cCa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857896	9857896	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369878342		P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	116	791	0	ENST00000330684.3:c.3505C>T	p.Arg1169Trp	p.R1169W	ENST00000330684	NM_001134407.1	1169	Cgg/Tgg																																																																															
BBC3	27113	MSKCC	GRCh37	19	47725019	47725019	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1039339737		P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	112	685	2	ENST00000449228.1:c.725del	p.Gly242AlafsTer48	p.G242Afs*48	ENST00000449228	NM_001127240.2	242	gGc/gc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739109	40739109	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1166590993		P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	89	598	0	ENST00000373198.4:c.3175C>T	p.Arg1059Trp	p.R1059W	ENST00000373198	NM_133170.3	1059	Cgg/Tgg																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56787223	56787223	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs770637624		P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	87	450	0	ENST00000337432.4:c.709C>T	p.Arg237Ter	p.R237*	ENST00000337432	NM_058216.2	237	Cga/Tga																																																																															
AXL	558	MSKCC	GRCh37	19	41749573	41749573	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144824336		P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	103	653	0	ENST00000301178.4:c.1498G>A	p.Val500Met	p.V500M	ENST00000301178	NM_021913.4	500	Gtg/Atg																																																																															
B2M	567	MSKCC	GRCh37	15	45007752	45007753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	112	621	0	ENST00000558401.1:c.204dup	p.Val69SerfsTer21	p.V69Sfs*21	ENST00000558401	NM_004048.2	67	gaa/gAaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	97	954	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229011	36229011	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	111	729	0	ENST00000222270.7:c.7795del	p.Glu2599ArgfsTer15	p.E2599Rfs*15	ENST00000222270	NM_014727.1	2597	gcG/gc																																																																															
BCL6	604	MSKCC	GRCh37	3	187446989	187446989	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769386051		P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	91	814	0	ENST00000232014.4:c.1204C>T	p.Arg402Cys	p.R402C	ENST00000232014	NM_001130845.1	402	Cgc/Tgc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453399	40453399	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs759027671		P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	113	727	6	ENST00000345506.4:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000345506	NM_003152.3	366	Ccc/cc																																																																															
CBFB	865	MSKCC	GRCh37	16	67070578	67070578	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	139	600	0	ENST00000412916.2:c.207del	p.Pro70ArgfsTer19	p.P70Rfs*19	ENST00000412916		68	Ttt/tt																																																																															
CD79A	973	MSKCC	GRCh37	19	42383351	42383351	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144367487		P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	49	659	1	ENST00000221972.3:c.371G>A	p.Arg124His	p.R124H	ENST00000221972	NM_021601.3	124	cGc/cAc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17122373	17122373	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375352888		P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	98	679	0	ENST00000285071.4:c.1022G>A	p.Arg341Gln	p.R341Q	ENST00000285071	NM_144997.5	341	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912140	114912140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	87	536	0	ENST00000543371.1:c.1210C>T	p.Arg404Trp	p.R404W	ENST00000543371	NM_001198531.1	404	Cgg/Tgg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970916	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	104	505	0	ENST00000265081.6:c.1147_1148del	p.Lys383GlyfsTer20	p.K383Gfs*20	ENST00000265081	NM_002439.4	381	AAa/a																																																																															
ROS1	6098	MSKCC	GRCh37	6	117642452	117642452	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	81	784	0	ENST00000368508.3:c.5747T>C	p.Val1916Ala	p.V1916A	ENST00000368508	NM_002944.2	1916	gTa/gCa																																																																															
POLE	5426	MSKCC	GRCh37	12	133257806	133257806	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148269473		P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	114	603	1	ENST00000320574.5:c.122C>T	p.Thr41Met	p.T41M	ENST00000320574	NM_006231.2	41	aCg/aTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217865	2217865	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1464303651		P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	95	761	0	ENST00000398665.3:c.2639C>T	p.Pro880Leu	p.P880L	ENST00000398665	NM_032482.2	880	cCg/cTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857365	9857365	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	101	717	1	ENST00000330684.3:c.4036del	p.Gln1346LysfsTer51	p.Q1346Kfs*51	ENST00000330684	NM_001134407.1	1346	Caa/aa																																																																															
E2F3	1871	MSKCC	GRCh37	6	20483037	20483037	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	102	537	0	ENST00000346618.3:c.770A>G	p.Gln257Arg	p.Q257R	ENST00000346618	NM_001949.4	257	cAa/cGa																																																																															
ALK	238	MSKCC	GRCh37	2	29416578	29416578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	115	813	0	ENST00000389048.3:c.4375G>T	p.Ala1459Ser	p.A1459S	ENST00000389048	NM_004304.4	1459	Gca/Tca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214894	36214894	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	72	604	1	ENST00000222270.7:c.3325del	p.Arg1109GlufsTer73	p.R1109Efs*73	ENST00000222270	NM_014727.1	1107	aCc/ac																																																																															
SLX4	84464	MSKCC	GRCh37	16	3634860	3634860	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369852048		P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	131	645	0	ENST00000294008.3:c.4649G>A	p.Arg1550Gln	p.R1550Q	ENST00000294008	NM_032444.2	1550	cGg/cAg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120795	94120795	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770806616		P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	48	631	0	ENST00000369303.4:c.256C>T	p.Arg86Trp	p.R86W	ENST00000369303	NM_004440.3	86	Cgg/Tgg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78797005	78797005	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1387655925		P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	79	552	0	ENST00000306801.3:c.1118C>T	p.Thr373Met	p.T373M	ENST00000306801	NM_020761.2	373	aCg/aTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	217	640	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515214	149515214	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	108	820	0	ENST00000261799.4:c.268C>A	p.Leu90Ile	p.L90I	ENST00000261799	NM_002609.3	90	Ctc/Atc																																																																															
ATR	545	MSKCC	GRCh37	3	142281406	142281406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	98	594	0	ENST00000350721.4:c.838C>A	p.Leu280Ile	p.L280I	ENST00000350721	NM_001184.3	280	Ctt/Att																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45394804	45394804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752926868		P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	81	460	0	ENST00000262160.6:c.545G>A	p.Arg182Gln	p.R182Q	ENST00000262160	NM_005901.5	182	cGa/cAa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101983	11101983	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1310204828		P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	89	641	0	ENST00000344626.4:c.1403G>A	p.Arg468His	p.R468H	ENST00000344626	NM_003072.3	468	cGc/cAc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129472	152129472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	82	555	0	ENST00000206249.3:c.425G>A	p.Arg142His	p.R142H	ENST00000206249	NM_000125.3	142	cGc/cAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436138	110436138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	102	772	0	ENST00000375856.3:c.2263C>T	p.His755Tyr	p.H755Y	ENST00000375856	NM_003749.2	755	Cat/Tat																																																																															
MSI1	4440	MSKCC	GRCh37	12	120794726	120794726	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	100	588	0	ENST00000257552.2:c.631A>G	p.Met211Val	p.M211V	ENST00000257552	NM_002442.3	211	Atg/Gtg																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628317	90628317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	127	890	0	ENST00000330062.3:c.1094G>A	p.Ser365Asn	p.S365N	ENST00000330062	NM_002168.2	365	aGc/aAc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52722966	52722966	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	87	569	0	ENST00000322088.6:c.1151T>C	p.Ile384Thr	p.I384T	ENST00000322088	NM_014225.5	384	aTc/aCc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198265474	198265474	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	89	556	0	ENST00000335508.6:c.2683G>T	p.Gly895Cys	p.G895C	ENST00000335508	NM_012433.2	895	Ggt/Tgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40899080	40899080	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	58	460	1	ENST00000373198.4:c.2190C>A	p.Ser730Arg	p.S730R	ENST00000373198	NM_133170.3	730	agC/agA																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29444474	29444474	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	97	678	0	ENST00000544604.2:c.1010T>G	p.Ile337Ser	p.I337S	ENST00000544604	NM_001206998.1	337	aTc/aGc																																																																															
BCL2	596	MSKCC	GRCh37	18	60795947	60795950	+	frameshift_variant	Frame_Shift_Del	DEL	CAAA	CAAA	-			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	40	706	0	ENST00000333681.4:c.628_631del	p.Phe210IlefsTer7	p.F210Ifs*7	ENST00000333681		210	TTTGat/at																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151833955	151833955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	102	545	0	ENST00000262189.6:c.14698C>T	p.His4900Tyr	p.H4900Y	ENST00000262189	NM_170606.2	4900	Cac/Tac																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937076	36937076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	87	677	0	ENST00000361632.4:c.1243G>T	p.Gly415Trp	p.G415W	ENST00000361632		415	Ggg/Tgg																																																																															
EP300	2033	MSKCC	GRCh37	22	41526005	41526005	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	80	354	0	ENST00000263253.7:c.1280A>G	p.Gln427Arg	p.Q427R	ENST00000263253	NM_001429.3	427	cAg/cGg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3823786	3823786	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	37	671	0	ENST00000262367.5:c.2429T>C	p.Met810Thr	p.M810T	ENST00000262367	NM_004380.2	810	aTg/aCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445685	49445685	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs190079343		P-0081393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	135	929	0	ENST00000301067.7:c.1781C>T	p.Pro594Leu	p.P594L	ENST00000301067	NM_003482.3	594	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0081395-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	79	539	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112116486	112116486	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0081395-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	34	309	0	ENST00000257430.4:c.532-1G>T		p.X178_splice	ENST00000257430	NM_000038.5	178																																																																																
TP53	7157	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0081395-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	35	546	0	ENST00000269305.4:c.389T>A	p.Leu130His	p.L130H	ENST00000269305	NM_001126112.2	130	cTc/cAc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907046	101907046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081395-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	49	370	0	ENST00000374994.4:c.1006T>C	p.Ser336Pro	p.S336P	ENST00000374994	NM_004612.2	336	Tca/Cca																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271356	26271357	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0081395-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	39	711	0	ENST00000305910.3:c.256_257del	p.Gln86GlufsTer20	p.Q86Efs*20	ENST00000305910	NM_003534.2	86	CAg/g																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468412	89468412	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1325678893		P-0081395-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	49	442	0	ENST00000336596.2:c.1946C>A	p.Ser649Ter	p.S649*	ENST00000336596	NM_005233.5	649	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0081396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	21	502	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0081396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	25	556	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0081396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	28	333	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244278	153244278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	47	444	0	ENST00000281708.4:c.1879G>T	p.Val627Leu	p.V627L	ENST00000281708	NM_033632.3	627	Gtg/Ttg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0081399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	201	525	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288207	33288207	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			891	62	579	0	ENST00000374542.5:c.1201A>G	p.Thr401Ala	p.T401A	ENST00000374542	NM_001141970.1	401	Acc/Gcc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629991	187629991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			764	48	638	0	ENST00000441802.2:c.991G>A	p.Gly331Ser	p.G331S	ENST00000441802	NM_005245.3	331	Ggc/Agc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871757	12871757	+	splice_acceptor_variant	Splice_Site	DEL	A	A	-			P-0081399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			812	63	433	0	ENST00000228872.4:c.476-2del		p.X159_splice	ENST00000228872	NM_004064.3	159																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0081400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	31	426	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0081409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	109	271	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
MAX	4149	MSKCC	GRCh37	14	65544703	65544703	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs387906650		P-0081409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	97	378	0	ENST00000358664.4:c.223C>T	p.Arg75Ter	p.R75*	ENST00000358664	NM_002382.4	75	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190746	11190746	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs563143860		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	152	475	0	ENST00000361445.4:c.5453G>A	p.Arg1818His	p.R1818H	ENST00000361445	NM_004958.3	1818	cGt/cAt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115266569	115266569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	90	358	0	ENST00000438362.2:c.1946G>A	p.Arg649His	p.R649H	ENST00000438362	NM_001242891.1	649	cGc/cAc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843598	156843598	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375878564		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	155	512	0	ENST00000524377.1:c.1024C>T	p.Arg342Trp	p.R342W	ENST00000524377	NM_002529.3	342	Cgg/Tgg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746101	162746101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374058699		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	158	408	0	ENST00000367921.3:c.2224C>T	p.Arg742Trp	p.R742W	ENST00000367921	NM_006182.2	742	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023559	27023560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	88	351	0	ENST00000324856.7:c.671dup	p.Pro225AlafsTer175	p.P225Afs*175	ENST00000324856	NM_006015.4	222	tac/taCc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106732	27106732	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	161	456	0	ENST00000324856.7:c.6343C>T	p.Gln2115Ter	p.Q2115*	ENST00000324856	NM_006015.4	2115	Cag/Tag																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739326	46739326	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780047827		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	133	384	1	ENST00000371975.4:c.1517C>T	p.Ala506Val	p.A506V	ENST00000371975	NM_003579.3	506	gCg/gTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920402	114920402	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs927089403		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	140	352	0	ENST00000543371.1:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000543371	NM_001198531.1	448	cGg/cAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913294		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	106	319	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108139302	108139302	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3218708		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	125	384	0	ENST00000278616.4:c.2804C>T	p.Thr935Met	p.T935M	ENST00000278616	NM_000051.3	935	aCg/aTg																																																																															
SDHD	6392	MSKCC	GRCh37	11	111958641	111958641	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199901239		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	85	182	0	ENST00000375549.3:c.113G>A	p.Arg38Gln	p.R38Q	ENST00000375549	NM_003002.3	38	cGa/cAa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94197308	94197308	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	50	266	0	ENST00000323929.3:c.1196del	p.Phe399SerfsTer29	p.F399Sfs*29	ENST00000323929	NM_005591.3	399	tTc/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894365		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	81	284	0	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431895	49431895	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs988895659		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	178	498	0	ENST00000301067.7:c.9244C>T	p.Arg3082Trp	p.R3082W	ENST00000301067	NM_003482.3	3082	Cgg/Tgg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	146	349	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134019	41134019	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146488369		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	182	498	0	ENST00000379561.5:c.1609C>T	p.Arg537Cys	p.R537C	ENST00000379561	NM_002015.3	537	Cgt/Tgt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472460	88472460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	119	399	0	ENST00000360948.2:c.2095G>T	p.Gly699Cys	p.G699C	ENST00000360948	NM_001012338.2	699	Ggc/Tgc																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2636752	2636752	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1043839627		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			712	144	424	0	ENST00000342085.4:c.1201G>A	p.Asp401Asn	p.D401N	ENST00000342085	NM_002613.4	401	Gac/Aac																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2647662	2647662	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1389216086		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	125	334	0	ENST00000342085.4:c.1565C>T	p.Thr522Met	p.T522M	ENST00000342085	NM_002613.4	522	aCg/aTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68842408	68842408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	122	441	0	ENST00000261769.5:c.469G>A	p.Val157Ile	p.V157I	ENST00000261769	NM_004360.3	157	Gtt/Att																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544465	86544465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	35	386	0	ENST00000262426.4:c.290G>A	p.Arg97His	p.R97H	ENST00000262426	NM_001451.2	97	cGc/cAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29509579	29509579	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754343223		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	135	367	0	ENST00000358273.4:c.784C>T	p.Arg262Cys	p.R262C	ENST00000358273	NM_001042492.2	262	Cgt/Tgt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			712	170	526	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40384055	40384055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	82	395	1	ENST00000293328.3:c.91C>T	p.Arg31Trp	p.R31W	ENST00000293328	NM_012448.3	31	Cgg/Tgg																																																																															
MSI2	124540	MSKCC	GRCh37	17	55693353	55693353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	111	345	0	ENST00000284073.2:c.560C>T	p.Pro187Leu	p.P187L	ENST00000284073	NM_138962.2	187	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	193	427	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170804	11170804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1306144699		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	118	378	0	ENST00000344626.4:c.4852C>T	p.Arg1618Ter	p.R1618*	ENST00000344626	NM_003072.3	1618	Cga/Tga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276755	15276755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138265894		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	197	470	1	ENST00000263388.2:c.5510G>A	p.Arg1837His	p.R1837H	ENST00000263388	NM_000435.2	1837	cGt/cAt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226388	2226388	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs112052747		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	65	416	0	ENST00000398665.3:c.3868G>A	p.Ala1290Thr	p.A1290T	ENST00000398665	NM_032482.2	1290	Gct/Act																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905962	50905962	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371612922		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	132	429	0	ENST00000440232.2:c.934G>A	p.Val312Met	p.V312M	ENST00000440232	NM_002691.3	312	Gtg/Atg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5225801	5225801	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1340374850		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	63	327	0	ENST00000357368.4:c.2431G>A	p.Ala811Thr	p.A811T	ENST00000357368	NM_002850.3	811	Gcc/Acc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716250	52716250	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769334090		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	78	435	0	ENST00000322088.6:c.694G>A	p.Ala232Thr	p.A232T	ENST00000322088	NM_014225.5	232	Gcc/Acc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212578280	212578280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	40	359	0	ENST00000342788.4:c.977G>A	p.Cys326Tyr	p.C326Y	ENST00000342788	NM_005235.2	326	tGc/tAc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661674	227661674	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760535759		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	171	412	0	ENST00000305123.5:c.1781G>A	p.Arg594His	p.R594H	ENST00000305123	NM_005544.2	594	cGt/cAt																																																																															
ALK	238	MSKCC	GRCh37	2	29436881	29436881	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	41	318	0	ENST00000389048.3:c.3712C>T	p.Gln1238Ter	p.Q1238*	ENST00000389048	NM_004304.4	1238	Cag/Tag																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC	rs1361078163		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			738	60	449	0	ENST00000234420.5:c.3260_3261dup	p.Phe1088ProfsTer3	p.F1088Pfs*3	ENST00000234420	NM_000179.2	1085	acc/aCCcc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99189287	99189287	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760873847		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	140	375	0	ENST00000074304.5:c.2543G>A	p.Arg848Gln	p.R848Q	ENST00000074304	NM_001134224.1	848	cGg/cAg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	141	480	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023823	31023823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	159	443	1	ENST00000375687.4:c.3308C>T	p.Ala1103Val	p.A1103V	ENST00000375687	NM_015338.5	1103	gCc/gTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41408878	41408878	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768757373		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	136	355	0	ENST00000373198.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000373198	NM_133170.3	183	cGg/cAg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21347168	21347168	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs935736801		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	129	413	0	ENST00000215739.8:c.1235G>A	p.Arg412His	p.R412H	ENST00000215739	NM_006767.3	412	cGc/cAc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200073	128200073	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374457534		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			708	177	486	0	ENST00000341105.2:c.1232C>T	p.Ala411Val	p.A411V	ENST00000341105	NM_032638.4	411	gCg/gTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	83	318	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	117	416	2	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799641	72799641	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145150877		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	51	427	0	ENST00000325599.8:c.1528C>T	p.Arg510Cys	p.R510C	ENST00000325599	NM_018130.2	510	Cgc/Tgc																																																																															
TET2	54790	MSKCC	GRCh37	4	106196976	106196976	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs556077207		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	130	436	0	ENST00000380013.4:c.5309C>T	p.Pro1770Leu	p.P1770L	ENST00000380013	NM_001127208.2	1770	cCg/cTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	109	372	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153253807	153253807	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760675122		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	88	318	0	ENST00000281708.4:c.926G>A	p.Arg309His	p.R309H	ENST00000281708	NM_033632.3	309	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	91	281	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	172	507	2	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180038452	180038452	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs744282		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	135	371	0	ENST00000261937.6:c.3565C>T	p.Arg1189Cys	p.R1189C	ENST00000261937	NM_182925.4	1189	Cgc/Tgc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673653	30673653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			759	141	453	0	ENST00000376406.3:c.3307C>T	p.Pro1103Ser	p.P1103S	ENST00000376406	NM_014641.2	1103	Cca/Tca																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32181617	32181617	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	134	425	0	ENST00000375023.3:c.2168G>A	p.Gly723Glu	p.G723E	ENST00000375023	NM_004557.3	723	gGa/gAa																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818245	32818245	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	132	390	0	ENST00000354258.4:c.1280C>A	p.Ala427Asp	p.A427D	ENST00000354258	NM_000593.5	427	gCc/gAc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818275	32818275	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754828996		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	145	388	0	ENST00000354258.4:c.1250G>A	p.Arg417Gln	p.R417Q	ENST00000354258	NM_000593.5	417	cGg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878863	151878863	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	166	450	0	ENST00000262189.6:c.6082C>T	p.Arg2028Ter	p.R2028*	ENST00000262189	NM_170606.2	2028	Cga/Tga																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894950	101894950	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777965779		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	136	358	2	ENST00000374994.4:c.503G>A	p.Arg168His	p.R168H	ENST00000374994	NM_004612.2	168	cGc/cAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391734	139391734	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375073677		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	138	451	0	ENST00000277541.6:c.6457G>A	p.Val2153Met	p.V2153M	ENST00000277541	NM_017617.3	2153	Gtg/Atg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922238	39922238	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs888552486		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	149	164	0	ENST00000378444.4:c.3934G>A	p.Ala1312Thr	p.A1312T	ENST00000378444	NM_001123385.1	1312	Gca/Aca																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650559	48650559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	193	272	0	ENST00000376670.3:c.529G>A	p.Gly177Arg	p.G177R	ENST00000376670	NM_002049.3	177	Ggg/Agg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852217		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	154	218	0	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
MED12	9968	MSKCC	GRCh37	X	70343444	70343444	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1209035119		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	119	178	0	ENST00000374080.3:c.1618C>T	p.Arg540Cys	p.R540C	ENST00000374080		540	Cgt/Tgt																																																																															
NADK	65220	MSKCC	GRCh37	1	1685626	1685626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	115	462	0	ENST00000341426.5:c.965C>T	p.Thr322Met	p.T322M	ENST00000341426	NM_023018.4	322	aCg/aTg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175984	176175984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	48	347	0	ENST00000367669.3:c.131C>T	p.Ala44Val	p.A44V	ENST00000367669	NM_022457.5	44	gCg/gTg																																																																															
CDC42	998	MSKCC	GRCh37	1	22405035	22405035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	57	117	0	ENST00000344548.3:c.64T>C	p.Ser22Pro	p.S22P	ENST00000344548	NM_001039802.1	22	Tcc/Ccc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246490592	246490592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	111	339	0	ENST00000388985.4:c.442G>A	p.Val148Ile	p.V148I	ENST00000388985		148	Gta/Ata																																																																															
RET	5979	MSKCC	GRCh37	10	43600513	43600513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	111	417	0	ENST00000355710.3:c.739G>A	p.Ala247Thr	p.A247T	ENST00000355710	NM_020975.4	247	Gcc/Acc																																																																															
RAB35	11021	MSKCC	GRCh37	12	120546265	120546265	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	106	267	0	ENST00000229340.5:c.59G>A	p.Gly20Asp	p.G20D	ENST00000229340	NM_006861.6	20	gGc/gAc																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51504605	51504605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	128	366	0	ENST00000260433.2:c.1175C>T	p.Thr392Ile	p.T392I	ENST00000260433		392	aCa/aTa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2107146	2107146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	40	454	0	ENST00000219476.3:c.815C>A	p.Ala272Asp	p.A272D	ENST00000219476	NM_000548.3	272	gCc/gAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68845751	68845751	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	125	352	0	ENST00000261769.5:c.997C>A	p.Leu333Met	p.L333M	ENST00000261769	NM_004360.3	333	Ctg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992870	72992870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	65	372	0	ENST00000268489.5:c.1175C>T	p.Ala392Val	p.A392V	ENST00000268489	NM_006885.3	392	gCt/gTt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78727817	78727817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	124	312	0	ENST00000306801.3:c.662C>T	p.Ala221Val	p.A221V	ENST00000306801	NM_020761.2	221	gCa/gTa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372093	45372093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	140	360	0	ENST00000262160.6:c.1076G>A	p.Ser359Asn	p.S359N	ENST00000262160	NM_005901.5	359	aGc/aAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212616	36212616	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	148	437	0	ENST00000222270.7:c.2367G>T	p.Glu789Asp	p.E789D	ENST00000222270	NM_014727.1	789	gaG/gaT																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205849	128205849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	122	377	0	ENST00000341105.2:c.26G>A	p.Arg9His	p.R9H	ENST00000341105	NM_032638.4	9	cGc/cAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967194	134967194	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201140799		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	136	414	0	ENST00000398015.3:c.2533C>A	p.Pro845Thr	p.P845T	ENST00000398015	NM_004441.4	845	Cca/Aca																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164712	47164712	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771203643		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	151	407	0	ENST00000409792.3:c.1414C>T	p.Arg472Cys	p.R472C	ENST00000409792	NM_014159.6	472	Cgt/Tgt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165453	47165453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	168	497	0	ENST00000409792.3:c.673G>A	p.Ala225Thr	p.A225T	ENST00000409792	NM_014159.6	225	Gca/Aca																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808891	1808891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	183	474	0	ENST00000260795.2:c.2323C>T	p.Gln775Ter	p.Q775*	ENST00000260795		775	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521064	187521064	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	111	417	1	ENST00000441802.2:c.12091T>C	p.Ser4031Pro	p.S4031P	ENST00000441802	NM_005245.3	4031	Tca/Cca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524435	187524435	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772322719		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	163	407	0	ENST00000441802.2:c.11245G>A	p.Asp3749Asn	p.D3749N	ENST00000441802	NM_005245.3	3749	Gat/Aat																																																																															
TERT	7015	MSKCC	GRCh37	5	1295798	1295798	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	161	472	0				ENST00000310581	NM_198253.2																																																																																	
LATS1	9113	MSKCC	GRCh37	6	149997861	149997861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	132	358	0	ENST00000253339.5:c.2606G>A	p.Arg869Gln	p.R869Q	ENST00000253339		869	cGg/cAg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100292	157100292	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	92	283	0	ENST00000346085.5:c.1229A>G	p.Gln410Arg	p.Q410R	ENST00000346085	NM_020732.3	410	cAg/cGg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815385	32815385	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	170	357	0	ENST00000354258.4:c.1988T>C	p.Leu663Pro	p.L663P	ENST00000354258	NM_000593.5	663	cTg/cCg																																																																															
POT1	25913	MSKCC	GRCh37	7	124482942	124482942	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778352298		P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	88	329	0	ENST00000357628.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000357628	NM_015450.2	361	cGc/cAc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935642	13935642	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	161	375	0	ENST00000405192.2:c.1214A>T	p.Asp405Val	p.D405V	ENST00000405192	NM_001163147.1	405	gAt/gTt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139418292	139418292	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	177	414	0	ENST00000277541.6:c.280T>C	p.Ser94Pro	p.S94P	ENST00000277541	NM_017617.3	94	Tct/Cct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0081441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	65	183	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0081441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	87	216	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933761	39933761	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763713717		P-0081441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	175	474	0	ENST00000378444.4:c.838G>A	p.Val280Ile	p.V280I	ENST00000378444	NM_001123385.1	280	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112128203	112128203	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	82	282	0	ENST00000257430.4:c.706C>T	p.Gln236Ter	p.Q236*	ENST00000257430	NM_000038.5	236	Cag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0081441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	130	308	0	ENST00000281708.4:c.1634A>T	p.Tyr545Phe	p.Y545F	ENST00000281708	NM_033632.3	545	tAt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0081441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	58	231	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120272	70120273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0081441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	157	525	0	ENST00000245479.2:c.1277dup	p.His427ThrfsTer151	p.H427Tfs*151	ENST00000245479	NM_000346.3	425	ctc/ctCc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117773	70117773	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	143	458	0	ENST00000245479.2:c.241C>G	p.Leu81Val	p.L81V	ENST00000245479	NM_000346.3	81	Ctc/Gtc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175951	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0081443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	245	438	0	ENST00000257430.4:c.4660G>T	p.Glu1554Ter	p.E1554*	ENST00000257430	NM_000038.5	1554	Gaa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	35	338	2	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0081443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	78	252	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579721	7579721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0081443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	184	342	0	ENST00000269305.4:c.75del	p.Leu26PhefsTer18	p.L26Ffs*18	ENST00000269305	NM_001126112.2	25	ctA/ct																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21341845	21341845	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775434314		P-0081443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	294	414	0	ENST00000215739.8:c.373G>A	p.Val125Ile	p.V125I	ENST00000215739	NM_006767.3	125	Gtc/Atc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157510907	157510907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	30	424	0	ENST00000346085.5:c.3682G>A	p.Gly1228Ser	p.G1228S	ENST00000346085	NM_020732.3	1228	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112173249	112173249	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0081443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	111	301	0	ENST00000257430.4:c.1959-1G>T		p.X653_splice	ENST00000257430	NM_000038.5	653																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0081457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	549	473	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439733	51439733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	411	570	0	ENST00000262662.1:c.298G>A	p.Asp100Asn	p.D100N	ENST00000262662		100	Gat/Aat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32950852	32950861	+	frameshift_variant	Frame_Shift_Del	DEL	AGCAAGTTCG	AGCAAGTTCG	-			P-0081457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	255	459	0	ENST00000380152.3:c.8678_8687del	p.Gln2893LeufsTer13	p.Q2893Lfs*13	ENST00000380152		2893	cAGCAAGTTCGt/ct																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482846	67482846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	316	557	0	ENST00000327367.4:c.1250C>T	p.Pro417Leu	p.P417L	ENST00000327367	NM_005902.3	417	cCa/cTa																																																																															
STAT3	6774	MSKCC	GRCh37	17	40500464	40500470	+	protein_altering_variant	In_Frame_Del	DEL	TCACTGT	TCACTGT	C			P-0081457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	227	400	0	ENST00000264657.5:c.65_71delinsG	p.Tyr22_Asp24delinsCys	p.Y22_D24delinsC	ENST00000264657	NM_139276.2	22	tACAGTGAc/tGc																																																																															
BCL6	604	MSKCC	GRCh37	3	187446183	187446183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	632	594	0	ENST00000232014.4:c.1505G>T	p.Gly502Val	p.G502V	ENST00000232014	NM_001130845.1	502	gGa/gTa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808017	1808070	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCTTGTTTGACCGAGTCTACACTCACCAGAGTGACGTGTACGTGTCCTGCAGA	GCCTTGTTTGACCGAGTCTACACTCACCAGAGTGACGTGTACGTGTCCTGCAGA	-			P-0081457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	359	795	0	ENST00000260795.2:c.1995_2030+18del		p.X665_splice	ENST00000260795		665																																																																																
EGFR	1956	MSKCC	GRCh37	7	55269464	55269464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	343	621	0	ENST00000275493.2:c.3151G>A	p.Asp1051Asn	p.D1051N	ENST00000275493	NM_005228.3	1051	Gat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			752	34	552	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866328	42866328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150389990		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			917	66	783	0	ENST00000398585.3:c.304G>A	p.Val102Ile	p.V102I	ENST00000398585	NM_001135099.1	102	Gtc/Atc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			740	47	597	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52723067	52723067	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770861676		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			784	45	690	0	ENST00000322088.6:c.1252C>T	p.Arg418Trp	p.R418W	ENST00000322088	NM_014225.5	418	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			821	142	865	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	25	304	3	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			799	55	632	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	52	679	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654642	67654642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			763	54	493	0	ENST00000264010.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000264010	NM_006565.3	377	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			823	52	576	0	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481857	56481857	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519817		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			810	57	676	0	ENST00000267101.3:c.785C>A	p.Pro262His	p.P262H	ENST00000267101	NM_001982.3	262	cCt/cAt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			807	61	700	1	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																															
BCL6	604	MSKCC	GRCh37	3	187446269	187446270	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770320988		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			852	46	692	0	ENST00000232014.4:c.1418dup	p.Lys474GlufsTer26	p.K474Efs*26	ENST00000232014	NM_001130845.1	473	ccg/ccCg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851131	63851131	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778262915		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			786	49	692	0	ENST00000279873.7:c.1909G>A	p.Asp637Asn	p.D637N	ENST00000279873	NM_032199.2	637	Gac/Aac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139404342	139404342	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs554142958		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			853	48	822	0	ENST00000277541.6:c.2812C>T	p.Arg938Trp	p.R938W	ENST00000277541	NM_017617.3	938	Cgg/Tgg																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997697	149997697	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs145871963		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			750	51	524	0	ENST00000253339.5:c.2770C>T	p.Arg924Ter	p.R924*	ENST00000253339		924	Cga/Tga																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262139	10262139	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			906	65	702	3	ENST00000340748.4:c.2152del	p.Met718CysfsTer59	p.M718Cfs*59	ENST00000340748		718	Atg/tg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630605	187630605	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			812	63	672	0	ENST00000441802.2:c.377del	p.Asn126IlefsTer20	p.N126Ifs*20	ENST00000441802	NM_005245.3	126	aAt/at																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341596	89341596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	48	581	0	ENST00000301030.4:c.7474G>A	p.Ala2492Thr	p.A2492T	ENST00000301030	NM_001256183.1	2492	Gca/Aca																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966872	25966873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			979	52	845	2	ENST00000435504.4:c.2333dup	p.Val779SerfsTer25	p.V779Sfs*25	ENST00000435504		778	cca/ccCa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46256425	46256425	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1200320359		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			924	62	612	0	ENST00000371998.3:c.653G>A	p.Arg218His	p.R218H	ENST00000371998		218	cGc/cAc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52582147	52582147	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1436814738		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			886	60	600	0	ENST00000394830.3:c.4681C>T	p.Arg1561Cys	p.R1561C	ENST00000394830	NM_018313.4	1561	Cgc/Tgc																																																																															
B2M	567	MSKCC	GRCh37	15	45007878	45007878	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			831	48	614	0	ENST00000558401.1:c.325C>T	p.Gln109Ter	p.Q109*	ENST00000558401	NM_004048.2	109	Cag/Tag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638999	176638999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753389957		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			876	57	636	0	ENST00000439151.2:c.3599G>A	p.Arg1200Gln	p.R1200Q	ENST00000439151	NM_022455.4	1200	cGg/cAg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			743	47	560	1	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37871746	37871746	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142783371		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			847	66	703	0	ENST00000269571.5:c.1270G>A	p.Val424Ile	p.V424I	ENST00000269571		424	Gtc/Atc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87636327	87636327	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770827440		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			765	51	637	0	ENST00000277120.3:c.2492C>T	p.Pro831Leu	p.P831L	ENST00000277120		831	cCg/cTg																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68290282	68290282	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138727212		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			783	84	484	0	ENST00000487270.1:c.22C>T	p.Arg8Ter	p.R8*	ENST00000487270	NM_133509.3	8	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1018	56	738	2	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1952803	1952803	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144714547		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			790	60	646	0	ENST00000382895.3:c.1886C>T	p.Ser629Leu	p.S629L	ENST00000382895	NM_133330.2	629	tCg/tTg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9783244	9783244	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs554743340		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			761	47	611	0	ENST00000377346.4:c.2488C>T	p.Arg830Cys	p.R830C	ENST00000377346	NM_005026.3	830	Cgt/Tgt																																																																															
RAF1	5894	MSKCC	GRCh37	3	12627233	12627233	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs941573221		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	46	499	0	ENST00000251849.4:c.1483C>T	p.Arg495Cys	p.R495C	ENST00000251849	NM_002880.3	495	Cgc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832266	72832266	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			760	40	672	0	ENST00000268489.5:c.4315C>T	p.Arg1439Ter	p.R1439*	ENST00000268489	NM_006885.3	1439	Cga/Tga																																																																															
BLM	641	MSKCC	GRCh37	15	91304374	91304374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777647725		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			893	49	659	0	ENST00000355112.3:c.1771C>T	p.Arg591Trp	p.R591W	ENST00000355112	NM_000057.2	591	Cgg/Tgg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164466	36164466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	42	500	0	ENST00000300305.3:c.1409C>T	p.Ala470Val	p.A470V	ENST00000300305		470	gCg/gTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638554	176638554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			887	54	692	0	ENST00000439151.2:c.3154C>T	p.Arg1052Cys	p.R1052C	ENST00000439151	NM_022455.4	1052	Cgc/Tgc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781374	135781374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377279170		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			827	55	707	0	ENST00000298552.3:c.1591G>A	p.Val531Met	p.V531M	ENST00000298552	NM_001162426.1	531	Gtg/Atg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141561430	141561430	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			898	48	701	1	ENST00000220592.5:c.1375del	p.Gln459SerfsTer9	p.Q459Sfs*9	ENST00000220592	NM_012154.3	459	Cag/ag																																																																															
MPL	4352	MSKCC	GRCh37	1	43812186	43812186	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201998783		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			907	63	681	0	ENST00000372470.3:c.1051C>T	p.Arg351Cys	p.R351C	ENST00000372470	NM_005373.2	351	Cgc/Tgc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495740	56495740	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			748	60	629	1	ENST00000267101.3:c.3934del	p.Thr1312LeufsTer5	p.T1312Lfs*5	ENST00000267101	NM_001982.3	1310	ctA/ct																																																																															
LYN	4067	MSKCC	GRCh37	8	56922493	56922493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			783	46	656	0	ENST00000519728.1:c.1363G>A	p.Ala455Thr	p.A455T	ENST00000519728	NM_002350.3	455	Gcc/Acc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141084	55141084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			758	43	587	0	ENST00000257290.5:c.1730C>A	p.Pro577Gln	p.P577Q	ENST00000257290	NM_006206.4	577	cCg/cAg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724658	43724658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755481776		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			784	47	717	0	ENST00000382044.4:c.3409C>T	p.Arg1137Trp	p.R1137W	ENST00000382044	NM_001141980.1	1137	Cgg/Tgg																																																																															
POLE	5426	MSKCC	GRCh37	12	133249281	133249281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770307281		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			797	48	720	0	ENST00000320574.5:c.1618G>A	p.Val540Ile	p.V540I	ENST00000320574	NM_006231.2	540	Gtc/Atc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120469132	120469132	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587609362		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	38	490	0	ENST00000256646.2:c.3995G>A	p.Arg1332His	p.R1332H	ENST00000256646	NM_024408.3	1332	cGt/cAt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778018	3778018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1299672210		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			924	53	821	0	ENST00000262367.5:c.7030C>T	p.Arg2344Trp	p.R2344W	ENST00000262367	NM_004380.2	2344	Cgg/Tgg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11294234	11294235	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs746242022		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			781	52	577	0	ENST00000361445.4:c.2296dup	p.Arg766ProfsTer24	p.R766Pfs*24	ENST00000361445	NM_004958.3	766	cga/cCga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210710	36210710	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745637683		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			817	56	677	0	ENST00000222270.7:c.461G>A	p.Arg154His	p.R154H	ENST00000222270	NM_014727.1	154	cGc/cAc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2189781	2189781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			815	47	643	0	ENST00000398665.3:c.251G>A	p.Ser84Asn	p.S84N	ENST00000398665	NM_032482.2	84	aGc/aAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257729	16257729	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199930614		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			918	54	745	1	ENST00000375759.3:c.4994C>T	p.Ala1665Val	p.A1665V	ENST00000375759	NM_015001.2	1665	gCg/gTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98241428	98241428	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs779204091		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	33	453	0	ENST00000331920.6:c.1069G>A	p.Ala357Thr	p.A357T	ENST00000331920	NM_000264.3	357	Gcc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056313	27056313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			900	61	634	0	ENST00000324856.7:c.1309C>T	p.Arg437Trp	p.R437W	ENST00000324856	NM_006015.4	437	Cgg/Tgg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355068	73355068	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770160151		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			812	67	519	0	ENST00000377767.4:c.302G>A	p.Arg101His	p.R101H	ENST00000377767	NM_014953.3	101	cGc/cAc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137323827	137323827	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762302539		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	38	688	0	ENST00000481739.1:c.1120G>A	p.Val374Ile	p.V374I	ENST00000481739	NM_002957.4	374	Gtc/Atc																																																																															
NF1	4763	MSKCC	GRCh37	17	29556079	29556079	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs886041347		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	32	422	1	ENST00000358273.4:c.2446C>T	p.Arg816Ter	p.R816*	ENST00000358273	NM_001042492.2	816	Cga/Tga																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250542	110250542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	32	430	0	ENST00000374672.4:c.133C>T	p.Arg45Trp	p.R45W	ENST00000374672	NM_004235.4	45	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123688	11123688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			777	55	617	0	ENST00000344626.4:c.2338G>A	p.Glu780Lys	p.E780K	ENST00000344626	NM_003072.3	780	Gag/Aag																																																																															
NF1	4763	MSKCC	GRCh37	17	29654736	29654736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs797045139		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			889	65	665	0	ENST00000358273.4:c.5488C>T	p.Arg1830Cys	p.R1830C	ENST00000358273	NM_001042492.2	1830	Cgc/Tgc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56857715	56857715	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767522635		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			793	53	659	0	ENST00000308159.5:c.751C>T	p.Arg251Cys	p.R251C	ENST00000308159	NM_014669.4	251	Cgc/Tgc																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38787170	38787170	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745448272		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	43	573	0	ENST00000348513.6:c.823G>A	p.Gly275Ser	p.G275S	ENST00000348513	NM_003079.4	275	Ggt/Agt																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123256180	123256180	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			734	47	539	1	ENST00000358487.5:c.1729C>T	p.Arg577Ter	p.R577*	ENST00000358487	NM_000141.4	577	Cga/Tga																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2058433	2058433	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1169585995		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			739	40	546	0	ENST00000349721.2:c.1490G>A	p.Arg497Gln	p.R497Q	ENST00000349721	NM_003070.3	497	cGg/cAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132438	11132438	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794284		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			861	54	726	0	ENST00000358026.2:c.2654G>A	p.Arg885His	p.R885H	ENST00000358026	NM_001128849.1	885	cGc/cAc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2084102	2084102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	42	484	0	ENST00000349721.2:c.2432G>A	p.Arg811His	p.R811H	ENST00000349721	NM_003070.3	811	cGt/cAt																																																																															
GAB1	2549	MSKCC	GRCh37	4	144361499	144361499	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			904	68	689	3	ENST00000262994.4:c.1554del	p.Val519TrpfsTer16	p.V519Wfs*16	ENST00000262994	NM_002039.3	517	Ccc/cc																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544233	86544233	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	38	491	0	ENST00000262426.4:c.62del	p.Gly21GlufsTer49	p.G21Efs*49	ENST00000262426	NM_001451.2	20	Ggg/gg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31401627	31401627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	49	473	0	ENST00000344624.3:c.4037G>A	p.Arg1346Gln	p.R1346Q	ENST00000344624		1346	cGg/cAg																																																																															
MED12	9968	MSKCC	GRCh37	X	70357154	70357156	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	45	358	0	ENST00000374080.3:c.5673_5675del	p.Ser1892del	p.S1892del	ENST00000374080		1890	cCCTcc/ccc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118353156	118353157	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	40	439	0	ENST00000534358.1:c.4038dup	p.Val1347SerfsTer24	p.V1347Sfs*24	ENST00000534358	NM_005933.3	1344	-/A																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84391522	84391522	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779497289		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	24	318	0	ENST00000321945.7:c.310C>T	p.Arg104Cys	p.R104C	ENST00000321945	NM_139076.2	104	Cgt/Tgt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41234573	41234573	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	42	504	0	ENST00000357654.3:c.4205A>G	p.His1402Arg	p.H1402R	ENST00000357654	NM_007294.3	1402	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112090591	112090591	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs569523442		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	35	373	0	ENST00000257430.4:c.4G>A	p.Ala2Thr	p.A2T	ENST00000257430	NM_000038.5	2	Gct/Act																																																																															
CDC73	79577	MSKCC	GRCh37	1	193202210	193202211	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			803	65	568	0	ENST00000367435.3:c.1247dup	p.Thr417HisfsTer4	p.T417Hfs*4	ENST00000367435	NM_024529.4	414	-/G																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626366	12626369	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	-			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			836	45	675	0	ENST00000251849.4:c.1780_1783del	p.Glu594ArgfsTer45	p.E594Rfs*45	ENST00000251849	NM_002880.3	594	GAAGag/ag																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2097776	2097776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	38	678	0	ENST00000219066.1:c.73C>T	p.Pro25Ser	p.P25S	ENST00000219066	NM_002528.5	25	Ccc/Tcc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643347	52643347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	46	504	0	ENST00000394830.3:c.2549G>A	p.Arg850Gln	p.R850Q	ENST00000394830	NM_018313.4	850	cGa/cAa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069204	5069204	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	45	496	0	ENST00000381652.3:c.1512del	p.Asp505IlefsTer6	p.D505Ifs*6	ENST00000381652	NM_004972.3	503	ccA/cc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164795	47164795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			800	45	645	0	ENST00000409792.3:c.1331C>T	p.Thr444Met	p.T444M	ENST00000409792	NM_014159.6	444	aCg/aTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1268678	1268678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			734	56	584	0	ENST00000310581.5:c.2539G>A	p.Gly847Ser	p.G847S	ENST00000310581	NM_198253.2	847	Ggc/Agc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21345967	21345967	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1390048261		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			774	43	758	0	ENST00000215739.8:c.842C>T	p.Pro281Leu	p.P281L	ENST00000215739	NM_006767.3	281	cCg/cTg																																																																															
CCND2	894	MSKCC	GRCh37	12	4385312	4385313	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			848	50	656	0	ENST00000261254.3:c.338_339del	p.Lys113ArgfsTer45	p.K113Rfs*45	ENST00000261254	NM_001759.3	113	AAa/a																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412939	63412940	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	42	349	0	ENST00000330258.3:c.227dup	p.Arg77ThrfsTer25	p.R77Tfs*25	ENST00000330258	NM_152424.3	76	gga/ggGa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11095992	11095992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			790	42	699	0	ENST00000344626.4:c.266G>A	p.Arg89His	p.R89H	ENST00000344626	NM_003072.3	89	cGc/cAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98215860	98215860	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1395751628		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	53	472	0	ENST00000331920.6:c.3349C>T	p.Leu1117Phe	p.L1117F	ENST00000331920	NM_000264.3	1117	Ctt/Ttt																																																																															
POLE	5426	MSKCC	GRCh37	12	133245443	133245443	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			786	45	724	0	ENST00000320574.5:c.1877A>G	p.Asp626Gly	p.D626G	ENST00000320574	NM_006231.2	626	gAc/gGc																																																																															
APLNR	187	MSKCC	GRCh37	11	57004237	57004237	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs538356535		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			861	50	784	0	ENST00000257254.3:c.242C>T	p.Thr81Met	p.T81M	ENST00000257254		81	aCg/aTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71945646	71945646	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs978500572		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	42	532	0	ENST00000298229.2:c.2402G>A	p.Arg801His	p.R801H	ENST00000298229	NM_001567.3	801	cGc/cAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41573096	41573096	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			827	54	786	0	ENST00000263253.7:c.5381A>C	p.Lys1794Thr	p.K1794T	ENST00000263253	NM_001429.3	1794	aAg/aCg																																																																															
POLE	5426	MSKCC	GRCh37	12	133225534	133225534	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	52	601	0	ENST00000320574.5:c.4130A>G	p.Glu1377Gly	p.E1377G	ENST00000320574	NM_006231.2	1377	gAg/gGg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822633	72822633	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			916	49	732	1	ENST00000268489.5:c.9542del	p.Pro3181GlnfsTer60	p.P3181Qfs*60	ENST00000268489	NM_006885.3	3181	cCa/ca																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138461426	138461426	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139214510		P-0081463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	43	456	0	ENST00000289153.2:c.595G>A	p.Val199Ile	p.V199I	ENST00000289153	NM_006219.2	199	Gta/Ata																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0081467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	27	364	1	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																															
NF2	4771	MSKCC	GRCh37	22	30061031	30061031	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0081467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	142	329	0	ENST00000338641.4:c.863C>G	p.Ser288Ter	p.S288*	ENST00000338641	NM_000268.3	288	tCa/tGa																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741558	17741558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	147	466	0	ENST00000250003.3:c.229G>A	p.Glu77Lys	p.E77K	ENST00000250003	NM_002478.4	77	Gag/Aag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600393	10600393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	177	622	0	ENST00000171111.5:c.1462G>A	p.Glu488Lys	p.E488K	ENST00000171111	NM_203500.1	488	Gag/Aag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099283	157099283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	154	563	0	ENST00000346085.5:c.220G>A	p.Glu74Lys	p.E74K	ENST00000346085	NM_020732.3	74	Gaa/Aaa																																																																															
B2M	567	MSKCC	GRCh37	15	45007741	45007742	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0081467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	152	564	0	ENST00000558401.1:c.194_195del	p.Arg65AsnfsTer2	p.R65Nfs*2	ENST00000558401	NM_004048.2	63	gGA/g																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028883	47028883	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0081467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	131	519	0	ENST00000329236.7:c.187G>T	p.Glu63Ter	p.E63*	ENST00000329236	NM_001204466.1	63	Gag/Tag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032377	10032377	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1348316426		P-0081467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	142	430	0	ENST00000330684.3:c.446C>T	p.Ala149Val	p.A149V	ENST00000330684	NM_001134407.1	149	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0081467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	160	281	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739688	145739688	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	122	573	0	ENST00000428558.2:c.1763G>C	p.Gly588Ala	p.G588A	ENST00000428558	NM_004260.3	588	gGa/gCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542446	187542446	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0081467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	81	629	0	ENST00000441802.2:c.5294T>A	p.Phe1765Tyr	p.F1765Y	ENST00000441802	NM_005245.3	1765	tTt/tAt																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99806189	99806190	+	missense_variant	Missense_Mutation	DNP	AG	AG	TA			P-0081467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	84	216	0	ENST00000280892.6:c.482_483delinsTA	p.Ser161Leu	p.S161L	ENST00000280892	NM_001130678.1	161	tCT/tTA																																																																															
B2M	567	MSKCC	GRCh37	15	45007751	45007753	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0081467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	165	570	0	ENST00000558401.1:c.198_200del	p.Glu67del	p.E67del	ENST00000558401	NM_004048.2	66	atTGAa/ata																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226259070	226259070	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	76	199	0	ENST00000366813.1:c.301C>G	p.Leu101Val	p.L101V	ENST00000366813		101	Ctg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578450	7578456	+	frameshift_variant	Frame_Shift_Del	DEL	CATGGCG	CATGGCG	-			P-0081467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	196	646	0	ENST00000269305.4:c.474_480del	p.Ala159ProfsTer9	p.A159Pfs*9	ENST00000269305	NM_001126112.2	158	cgCGCCATG/cg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128047052	128047053	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0081467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	118	465	0	ENST00000285398.2:c.682_683delinsTT	p.Gly228Phe	p.G228F	ENST00000285398	NM_000122.1	228	GGt/TTt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141551280	141551280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	171	520	0	ENST00000220592.5:c.2017G>A	p.Glu673Lys	p.E673K	ENST00000220592	NM_012154.3	673	Gaa/Aaa																																																																															
NF1	4763	MSKCC	GRCh37	17	29661861	29661861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	157	412	0	ENST00000358273.4:c.5818G>A	p.Glu1940Lys	p.E1940K	ENST00000358273	NM_001042492.2	1940	Gaa/Aaa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753516	42753516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			746	167	737	0	ENST00000222329.4:c.748G>T	p.Val250Leu	p.V250L	ENST00000222329	NM_006494.2	250	Gtg/Ttg																																																																															
EP300	2033	MSKCC	GRCh37	22	41562602	41562602	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0081467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	175	344	0	ENST00000263253.7:c.3807-1G>A		p.X1269_splice	ENST00000263253	NM_001429.3	1269																																																																																
TP53	7157	MSKCC	GRCh37	17	7578283	7578283	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004170-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			188	79	484	0	ENST00000269305.4:c.566C>G	p.Ala189Gly	p.A189G	ENST00000269305	NM_001126112.2	189	gCc/gGc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2974113	2974113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767276756		P-0004170-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			195	48	385	0	ENST00000396946.4:c.1492C>T	p.Arg498Cys	p.R498C	ENST00000396946	NM_032415.4	498	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075343-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	307	602	0	ENST00000269305.4:c.405C>A	p.Cys135Ter	p.C135*	ENST00000269305	NM_001126112.2	135	tgC/tgA																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11958277	11958277	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778746854		P-0075343-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	67	196	0	ENST00000353533.5:c.187C>T	p.Pro63Ser	p.P63S	ENST00000353533	NM_003010.3	63	Ccc/Tcc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075811-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	19	404	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0075811-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	39	326	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512326	149512326	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371975483		P-0075811-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			478	34	435	0	ENST00000261799.4:c.1114G>A	p.Val372Met	p.V372M	ENST00000261799	NM_002609.3	372	Gtg/Atg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12447468	12447468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075811-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			408	28	399	0	ENST00000287820.6:c.707C>A	p.Ser236Tyr	p.S236Y	ENST00000287820	NM_015869.4	236	tCc/tAc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0078179-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			439	22	350	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0078179-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			377	62	345	0				ENST00000310581	NM_198253.2																																																																																	
ERRFI1	54206	MSKCC	GRCh37	1	8073495	8073497	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0078179-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			611	42	512	0	ENST00000377482.5:c.1162_1164del	p.Lys388del	p.K388del	ENST00000377482	NM_018948.3	388	AAG/-																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27098997	27098997	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0078179-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			646	32	0	0	ENST00000324856.7:c.3413C>G	p.Ser1138Ter	p.S1138*	ENST00000324856	NM_006015.4	1138	tCa/tGa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103520475	103520510	+	inframe_deletion	In_Frame_Del	DEL	ATAAGTTAATAAATTTGGCTTATTTGCTTGGAAGTG	ATAAGTTAATAAATTTGGCTTATTTGCTTGGAAGTG	-			P-0078179-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			358	39	270	0	ENST00000355739.4:c.2548_2583del	p.Lys850_Asp861del	p.K850_D861del	ENST00000355739	NM_000123.3	849	aATAAGTTAATAAATTTGGCTTATTTGCTTGGAAGTGat/aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0078355-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	266	669	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																															
EZH2	2146	MSKCC	GRCh37	7	148523725	148523725	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0079554-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			491	158	304	0	ENST00000320356.2:c.729-1G>A		p.X243_splice	ENST00000320356	NM_004456.4	243																																																																																
KDR	3791	MSKCC	GRCh37	4	55981077	55981077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0079554-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			11	98	313	1	ENST00000263923.4:c.622A>T	p.Ser208Cys	p.S208C	ENST00000263923	NM_002253.2	208	Agt/Tgt																																																																															
KDR	3791	MSKCC	GRCh37	4	55955581	55955581	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079554-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			7	107	346	0	ENST00000263923.4:c.3364G>C	p.Gly1122Arg	p.G1122R	ENST00000263923	NM_002253.2	1122	Gga/Cga																																																																															
RECQL	5965	MSKCC	GRCh37	12	21628426	21628426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079554-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			722	161	305	0	ENST00000421138.2:c.1192T>C	p.Tyr398His	p.Y398H	ENST00000421138		398	Tat/Cat																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202926	16202926	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079554-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			211	192	400	0	ENST00000375759.3:c.634C>G	p.Pro212Ala	p.P212A	ENST00000375759	NM_015001.2	212	Ccc/Gcc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857386	9857386	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0079554-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			241	23	374	0	ENST00000330684.3:c.4015A>T	p.Lys1339Ter	p.K1339*	ENST00000330684	NM_001134407.1	1339	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691027		P-0080087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	231	427	0	ENST00000269305.4:c.844del	p.Arg282GlyfsTer63	p.R282Gfs*63	ENST00000269305	NM_001126112.2	282	Cgg/gg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374115	118374119	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCA	CTCCA	-			P-0080087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	165	460	0	ENST00000534358.1:c.7509_7513del	p.Pro2504HisfsTer30	p.P2504Hfs*30	ENST00000534358	NM_005933.3	2503	gCTCCA/g																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041720	47041720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	93	381	0	ENST00000329236.7:c.1711C>G	p.Gln571Glu	p.Q571E	ENST00000329236	NM_001204466.1	571	Caa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579362	7579362	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057523496		P-0080340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	272	487	0	ENST00000269305.4:c.325T>G	p.Phe109Val	p.F109V	ENST00000269305	NM_001126112.2	109	Ttc/Gtc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929070	44929071	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0080340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	173	353	0	ENST00000377967.4:c.2172_2173del	p.Leu725AspfsTer4	p.L725Dfs*4	ENST00000377967	NM_021140.2	724	ATa/a																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912696	32912696	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	139	377	0	ENST00000380152.3:c.4205del	p.Asn1402IlefsTer8	p.N1402Ifs*8	ENST00000380152		1402	Aat/at																																																																															
RAC2	5880	MSKCC	GRCh37	22	37627979	37627979	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	118	407	0	ENST00000249071.6:c.281G>C	p.Arg94Pro	p.R94P	ENST00000249071	NM_002872.4	94	cGc/cCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080411-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			541	133	487	0	ENST00000269305.4:c.511del	p.Glu171ArgfsTer3	p.E171Rfs*3	ENST00000269305	NM_001126112.2	171	Gag/ag																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67569301	67569301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080411-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			392	102	371	0	ENST00000274335.5:c.418G>A	p.Glu140Lys	p.E140K	ENST00000274335		140	Gaa/Aaa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409769	139409769	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs548000491		P-0080411-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			488	90	362	1	ENST00000277541.6:c.1987G>A	p.Glu663Lys	p.E663K	ENST00000277541	NM_017617.3	663	Gag/Aag																																																																															
B2M	567	MSKCC	GRCh37	15	45007770	45007787	+	inframe_deletion	In_Frame_Del	DEL	GACTTGTCTTTCAGCAAG	GACTTGTCTTTCAGCAAG	-			P-0080411-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			552	126	397	0	ENST00000558401.1:c.221_238del	p.Leu74_Asp79del	p.L74_D79del	ENST00000558401	NM_004048.2	73	GACTTGTCTTTCAGCAAG/-																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781403	135781403	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759379027		P-0080411-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			600	102	423	0	ENST00000298552.3:c.1562C>T	p.Ser521Leu	p.S521L	ENST00000298552	NM_001162426.1	521	tCg/tTg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396293	396293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080411-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			670	124	444	0	ENST00000262320.3:c.733G>A	p.Glu245Lys	p.E245K	ENST00000262320	NM_003502.3	245	Gag/Aag																																																																															
YES1	7525	MSKCC	GRCh37	18	747953	747953	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080411-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			483	130	389	0	ENST00000314574.4:c.437A>T	p.Tyr146Phe	p.Y146F	ENST00000314574	NM_005433.3	146	tAt/tTt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184113	56184113	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs202155960		P-0080411-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			469	95	392	0	ENST00000399503.3:c.4318A>G	p.Ile1440Val	p.I1440V	ENST00000399503	NM_005921.1	1440	Ata/Gta																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14024747	14024747	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0080411-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			483	103	344	0	ENST00000311895.7:c.973G>C	p.Gly325Arg	p.G325R	ENST00000311895	NM_005236.2	325	Ggt/Cgt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649956	88649956	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080411-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			411	119	296	0	ENST00000372037.3:c.205G>T	p.Asp69Tyr	p.D69Y	ENST00000372037	NM_004329.2	69	Gat/Tat																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396250	396250	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080411-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			638	117	421	0	ENST00000262320.3:c.776G>C	p.Arg259Thr	p.R259T	ENST00000262320	NM_003502.3	259	aGa/aCa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225342	2225342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080411-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			517	126	403	0	ENST00000326181.6:c.1427G>A	p.Arg476Gln	p.R476Q	ENST00000326181	NM_032271.2	476	cGg/cAg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041812	14041812	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0080411-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			594	120	464	0	ENST00000311895.7:c.2359A>C	p.Lys787Gln	p.K787Q	ENST00000311895	NM_005236.2	787	Aaa/Caa																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217697	7217700	+	protein_altering_variant	In_Frame_Del	DEL	AAAA	AAAA	C			P-0080411-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			556	152	458	0	ENST00000380728.2:c.227_230delinsG	p.Leu76_Leu77delinsArg	p.L76_L77delinsR	ENST00000380728		76	cTTTTg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			14	12	309	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458732	120458770	+	inframe_deletion	In_Frame_Del	DEL	GAAGGTTAGAAAAAGATAGTGCATGCTGGGCATGGACTG	GAAGGTTAGAAAAAGATAGTGCATGCTGGGCATGGACTG	-			P-0080502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	132	641	0	ENST00000256646.2:c.6575_6613del	p.Pro2192_Leu2204del	p.P2192_L2204del	ENST00000256646	NM_024408.3	2192	cCAGTCCATGCCCAGCATGCACTATCTTTTTCTAACCTTCat/cat																																																																															
RB1	5925	MSKCC	GRCh37	13	48941651	48941651	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	37	267	0	ENST00000267163.4:c.961T>A	p.Tyr321Asn	p.Y321N	ENST00000267163	NM_000321.2	321	Tac/Aac																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43784205	43784205	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	121	432	0	ENST00000382044.4:c.281T>A	p.Val94Asp	p.V94D	ENST00000382044	NM_001141980.1	94	gTt/gAt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3929835	3929944	+	start_lost,splice_region_variant,5_prime_UTR_variant	Translation_Start_Site	DEL	GTGCTGTCATTCGCCGAGAAACCGGGCGAGCTGAGTTTGGCTCTTTTGGGGTTGGGCGGTCCGTCCAGCAAGTTCTCAGCCATTTTCACCTGCTCGCGAAAACAGCCCCG	GTGCTGTCATTCGCCGAGAAACCGGGCGAGCTGAGTTTGGCTCTTTTGGGGTTGGGCGGTCCGTCCAGCAAGTTCTCAGCCATTTTCACCTGCTCGCGAAAACAGCCCCG	-			P-0080502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	12	388	0	ENST00000262367.5:c.-27_83del		p.*9*	ENST00000262367	NM_004380.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577529	7577530	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGGCCT			P-0080502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	96	423	0	ENST00000269305.4:c.745_751dup	p.Ile251LysfsTer15	p.I251Kfs*15	ENST00000269305	NM_001126112.2	251	atc/aAGGCCCAtc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189888	66189888	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	90	441	0	ENST00000273854.3:c.3058A>T	p.Met1020Leu	p.M1020L	ENST00000273854	NM_004439.5	1020	Atg/Ttg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056108	26056108	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	30	483	0	ENST00000343677.2:c.549G>C	p.Lys183Asn	p.K183N	ENST00000343677	NM_005319.3	183	aaG/aaC																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922784	44922784	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	106	483	0	ENST00000377967.4:c.1645A>G	p.Arg549Gly	p.R549G	ENST00000377967	NM_021140.2	549	Aga/Gga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0080569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	123	477	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0080569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	173	697	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	60	427	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0080569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	124	697	0	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576121	88576121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374272958		P-0080569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	106	603	0	ENST00000360948.2:c.1552C>T	p.Arg518Cys	p.R518C	ENST00000360948	NM_001012338.2	518	Cgt/Tgt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38952360	38952360	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	62	562	0	ENST00000357387.3:c.3065T>C	p.Leu1022Pro	p.L1022P	ENST00000357387	NM_152756.3	1022	cTa/cCa																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326467	62326467	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs372852392		P-0080569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	75	655	0	ENST00000482936.1:c.3392C>T	p.Thr1131Met	p.T1131M	ENST00000482936		1131	aCg/aTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42796838	42796838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	81	725	0	ENST00000575354.2:c.3296G>A	p.Ser1099Asn	p.S1099N	ENST00000575354	NM_015125.3	1099	aGc/aAc																																																																															
MYC	4609	MSKCC	GRCh37	8	128752891	128752891	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	204	635	0	ENST00000377970.2:c.1052T>C	p.Ile351Thr	p.I351T	ENST00000377970	NM_002467.4	351	aTc/aCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0080576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	113	839	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604749	48604749	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0080576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	139	699	0	ENST00000342988.3:c.1571G>A	p.Trp524Ter	p.W524*	ENST00000342988	NM_005359.5	524	tGg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	218	436	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18524187	18524187	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	91	566	0	ENST00000266497.5:c.1699T>C	p.Cys567Arg	p.C567R	ENST00000266497		567	Tgt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs397516439		P-0080627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			43	147	488	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0080627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	122	250	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508439	106508439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	71	398	1	ENST00000359195.3:c.433G>A	p.Glu145Lys	p.E145K	ENST00000359195	NM_002649.2	145	Gag/Aag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436728	110436728	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs569788055		P-0080627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	146	386	1	ENST00000375856.3:c.1673G>A	p.Arg558Gln	p.R558Q	ENST00000375856	NM_003749.2	558	cGg/cAg																																																																															
RB1	5925	MSKCC	GRCh37	13	48923159	48923159	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0080650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	13	298	0	ENST00000267163.4:c.607+1del		p.G203fs	ENST00000267163	NM_000321.2	203	Ggg/gg																																																																															
APC	324	MSKCC	GRCh37	5	112174032	112174032	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	59	518	0	ENST00000257430.4:c.2741G>T	p.Cys914Phe	p.C914F	ENST00000257430	NM_000038.5	914	tGt/tTt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43784489	43784508	+	frameshift_variant	Frame_Shift_Del	DEL	GGATTTTCTTTGTGCGTCTG	GGATTTTCTTTGTGCGTCTG	-			P-0080650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	47	492	0	ENST00000382044.4:c.166_185del	p.Gln56CysfsTer9	p.Q56Cfs*9	ENST00000382044	NM_001141980.1	56	CAGACGCACAAAGAAAATCCt/t																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259568	89259568	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080705-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			311	177	349	0	ENST00000336596.2:c.712G>T	p.Asp238Tyr	p.D238Y	ENST00000336596	NM_005233.5	238	Gat/Tat																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741789	17741789	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080705-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			321	173	346	0	ENST00000250003.3:c.460A>T	p.Ile154Phe	p.I154F	ENST00000250003	NM_002478.4	154	Atc/Ttc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630767	187630767	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1382265220		P-0080705-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			385	331	433	0	ENST00000441802.2:c.215A>G	p.Tyr72Cys	p.Y72C	ENST00000441802	NM_005245.3	72	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	207	554	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86637113	86637113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			79	36	207	0	ENST00000274376.6:c.1024G>A	p.Glu342Lys	p.E342K	ENST00000274376	NM_002890.2	342	Gaa/Aaa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88670400	88670400	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs140016144		P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	60	359	0	ENST00000360948.2:c.1286C>A	p.Thr429Asn	p.T429N	ENST00000360948	NM_001012338.2	429	aCt/aAt																																																																															
BTK	695	MSKCC	GRCh37	X	100611866	100611866	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			56	150	165	0	ENST00000308731.7:c.1255G>T	p.Gly419Trp	p.G419W	ENST00000308731	NM_000061.2	419	Ggg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108098601	108098601	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	173	315	0	ENST00000278616.4:c.171G>T	p.Trp57Cys	p.W57C	ENST00000278616	NM_000051.3	57	tgG/tgT																																																																															
MSH2	4436	MSKCC	GRCh37	2	47693887	47693887	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587778523		P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	103	389	1	ENST00000233146.2:c.1601G>T	p.Arg534Leu	p.R534L	ENST00000233146	NM_000251.2	534	cGt/cTt																																																																															
ATM	472	MSKCC	GRCh37	11	108142001	108142001	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749471737		P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	54	327	0	ENST00000278616.4:c.2945G>A	p.Arg982His	p.R982H	ENST00000278616	NM_000051.3	982	cGt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187554979	187554979	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	139	433	0	ENST00000441802.2:c.4184-2A>T		p.X1395_splice	ENST00000441802	NM_005245.3	1395																																																																																
ARID2	196528	MSKCC	GRCh37	12	46245776	46245776	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	153	491	0	ENST00000334344.6:c.3872del	p.Gly1291GlufsTer4	p.G1291Efs*4	ENST00000334344	NM_152641.2	1290	gtG/gt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244040	46244040	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	185	442	0	ENST00000334344.6:c.2134G>T	p.Glu712Ter	p.E712*	ENST00000334344	NM_152641.2	712	Gaa/Taa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445091	89445091	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs537923825		P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	102	391	0	ENST00000336596.2:c.1411G>C	p.Glu471Gln	p.E471Q	ENST00000336596	NM_005233.5	471	Gag/Cag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25471009	25471009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	82	542	0	ENST00000264709.3:c.752C>T	p.Thr251Ile	p.T251I	ENST00000264709	NM_175629.2	251	aCt/aTt																																																																															
ATR	545	MSKCC	GRCh37	3	142269117	142269117	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	33	282	0	ENST00000350721.4:c.2833C>A	p.Gln945Lys	p.Q945K	ENST00000350721	NM_001184.3	945	Cag/Aag																																																																															
CCNE1	898	MSKCC	GRCh37	19	30311753	30311753	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	108	293	0	ENST00000262643.3:c.607G>A	p.Glu203Lys	p.E203K	ENST00000262643	NM_001238.2	203	Gag/Aag																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760719	59760719	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	58	332	0	ENST00000259008.2:c.3688G>T	p.Glu1230Ter	p.E1230*	ENST00000259008	NM_032043.2	1230	Gaa/Taa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967269	25967269	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	75	511	0	ENST00000435504.4:c.1937T>A	p.Ile646Asn	p.I646N	ENST00000435504		646	aTc/aAc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141566342	141566342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	270	400	0	ENST00000220592.5:c.1070C>A	p.Thr357Lys	p.T357K	ENST00000220592	NM_012154.3	357	aCg/aAg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968333	134968333	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	137	384	0	ENST00000398015.3:c.2846A>G	p.Glu949Gly	p.E949G	ENST00000398015	NM_004441.4	949	gAa/gGa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641525	18641525	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs773221094		P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	89	386	0	ENST00000266497.5:c.2527del	p.Glu843LysfsTer15	p.E843Kfs*15	ENST00000266497		842	Ggg/gg																																																																															
ATM	472	MSKCC	GRCh37	11	108143549	108143549	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	95	336	0	ENST00000278616.4:c.3254T>G	p.Val1085Gly	p.V1085G	ENST00000278616	NM_000051.3	1085	gTt/gGt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149433899	149433899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	89	462	0	ENST00000286301.3:c.2749G>A	p.Asp917Asn	p.D917N	ENST00000286301	NM_005211.3	917	Gac/Aac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991356	72991356	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs373464063		P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	167	409	0	ENST00000268489.5:c.2689G>C	p.Gly897Arg	p.G897R	ENST00000268489	NM_006885.3	897	Ggg/Cgg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37083805	37083805	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781796		P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	64	278	0	ENST00000231790.2:c.1714G>A	p.Gly572Ser	p.G572S	ENST00000231790	NM_000249.3	572	Ggt/Agt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913212	39913212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	92	260	0	ENST00000378444.4:c.4903G>T	p.Asp1635Tyr	p.D1635Y	ENST00000378444	NM_001123385.1	1635	Gat/Tat																																																																															
ETV6	2120	MSKCC	GRCh37	12	12006490	12006490	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	215	499	0	ENST00000396373.4:c.458A>G	p.Glu153Gly	p.E153G	ENST00000396373	NM_001987.4	153	gAa/gGa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8317911	8317911	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	68	378	0	ENST00000356435.5:c.5702T>A	p.Leu1901Gln	p.L1901Q	ENST00000356435		1901	cTa/cAa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94068018	94068018	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	126	329	0	ENST00000369303.4:c.944G>T	p.Gly315Val	p.G315V	ENST00000369303	NM_004440.3	315	gGg/gTg																																																																															
PAX5	5079	MSKCC	GRCh37	9	36923351	36923351	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	98	419	0	ENST00000358127.4:c.910+1G>T		p.X304_splice	ENST00000358127	NM_001280556.1	304																																																																																
FLT4	2324	MSKCC	GRCh37	5	180038329	180038329	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	81	476	0	ENST00000261937.6:c.3686+2T>A		p.X1229_splice	ENST00000261937	NM_182925.4	1229																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8518080	8518080	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	201	389	0	ENST00000356435.5:c.1311G>T	p.Gln437His	p.Q437H	ENST00000356435		437	caG/caT																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797920	45797920	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	108	598	0	ENST00000372115.3:c.809A>G	p.Glu270Gly	p.E270G	ENST00000372115	NM_001048171.1	270	gAg/gGg																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72842074	72842074	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	61	297	0	ENST00000325599.8:c.1174A>G	p.Lys392Glu	p.K392E	ENST00000325599	NM_018130.2	392	Aaa/Gaa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435236	18435236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	103	479	0	ENST00000266497.5:c.221C>A	p.Thr74Lys	p.T74K	ENST00000266497		74	aCa/aAa																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84391531	84391531	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	73	230	0	ENST00000321945.7:c.301A>G	p.Lys101Glu	p.K101E	ENST00000321945	NM_139076.2	101	Aaa/Gaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0080715-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	78	356	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579314	7579314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G	rs1057520003		P-0080715-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	163	428	0	ENST00000269305.4:c.373A>C	p.Thr125Pro	p.T125P	ENST00000269305	NM_001126112.2	125	Acg/Ccg																																																																															
SMO	6608	MSKCC	GRCh37	7	128843237	128843237	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080715-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	63	505	0	ENST00000249373.3:c.344C>A	p.Ala115Asp	p.A115D	ENST00000249373	NM_005631.4	115	gCc/gAc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467841	99467841	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773153471		P-0080718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	116	410	0	ENST00000268035.6:c.2710C>T	p.Arg904Trp	p.R904W	ENST00000268035	NM_000875.3	904	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0080718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	170	495	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173299	112173299	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0080718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	142	353	0	ENST00000257430.4:c.2008A>T	p.Lys670Ter	p.K670*	ENST00000257430	NM_000038.5	670	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0080718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	56	339	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713805	30713805	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	53	457	0	ENST00000359013.4:c.1205A>G	p.His402Arg	p.H402R	ENST00000359013	NM_001024847.2	402	cAc/cGc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026828	71026828	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	60	350	0	ENST00000318789.4:c.1394G>T	p.Arg465Ile	p.R465I	ENST00000318789	NM_032682.5	465	aGa/aTa																																																																															
AR	367	MSKCC	GRCh37	X	66766090	66766090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	49	219	0	ENST00000374690.3:c.1102C>A	p.Pro368Thr	p.P368T	ENST00000374690	NM_000044.3	368	Cca/Aca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5243923	5243923	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778260386		P-0080755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	311	387	0	ENST00000357368.4:c.1559C>T	p.Thr520Met	p.T520M	ENST00000357368	NM_002850.3	520	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0080755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	273	408	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
HGF	3082	MSKCC	GRCh37	7	81374403	81374403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372600489		P-0080755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	179	327	0	ENST00000222390.5:c.659G>A	p.Arg220Gln	p.R220Q	ENST00000222390	NM_000601.4	220	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577523	7577524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0080755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	293	394	0	ENST00000269305.4:c.757dup	p.Thr253AsnfsTer11	p.T253Nfs*11	ENST00000269305	NM_001126112.2	253	acc/aAcc																																																																															
TET1	80312	MSKCC	GRCh37	10	70405962	70405962	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140289196		P-0080755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	152	456	0	ENST00000373644.4:c.3476G>A	p.Arg1159Gln	p.R1159Q	ENST00000373644	NM_030625.2	1159	cGg/cAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120124	70120124	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	453	379	0	ENST00000245479.2:c.1126C>T	p.Gln376Ter	p.Q376*	ENST00000245479	NM_000346.3	376	Cag/Tag																																																																															
TEK	7010	MSKCC	GRCh37	9	27209165	27209165	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0080755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	130	313	0	ENST00000380036.4:c.2622A>C	p.Glu874Asp	p.E874D	ENST00000380036	NM_000459.3	874	gaA/gaC																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562493	21562494	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGGGT	rs1364898676		P-0080755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			807	75	342	0	ENST00000382592.4:c.1425_1426insACCCCC	p.Pro475_Ala476insThrPro	p.P475_A476insTP	ENST00000382592	NM_014572.2	475	-/ACCCCC																																																																															
NF1	4763	MSKCC	GRCh37	17	29592342	29592342	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			89	172	253	0	ENST00000358273.4:c.4820A>G	p.Tyr1607Cys	p.Y1607C	ENST00000358273	NM_001042492.2	1607	tAt/tGt																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735350	204735350	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs606231417		P-0080755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	260	425	0	ENST00000302823.3:c.151C>T	p.Arg51Ter	p.R51*	ENST00000302823	NM_005214.4	51	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29592335	29592336	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0080755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	158	258	0	ENST00000358273.4:c.4818_4819dup	p.Tyr1607PhefsTer18	p.Y1607Ffs*18	ENST00000358273	NM_001042492.2	1605	att/aTTtt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080786-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			342	47	370	0	ENST00000397062.3:c.92G>A	p.Gly31Glu	p.G31E	ENST00000397062	NM_006164.4	31	gGa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0080786-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			409	45	435	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100919	27100919	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080786-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	61	408	0	ENST00000324856.7:c.4201C>T	p.Gln1401Ter	p.Q1401*	ENST00000324856	NM_006015.4	1401	Cag/Tag																																																																															
MDM2	4193	MSKCC	GRCh37	12	69222647	69222647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080786-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			247	134	375	0	ENST00000462284.1:c.620T>A	p.Val207Glu	p.V207E	ENST00000462284	NM_002392.5	207	gTa/gAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099334	27099335	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	A			P-0080786-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	70	401	0	ENST00000324856.7:c.3571_3572delinsA	p.Phe1191IlefsTer15	p.F1191Ifs*15	ENST00000324856	NM_006015.4	1191	TTt/At																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170015	32170015	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080786-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	27	404	0	ENST00000375023.3:c.3593G>T	p.Trp1198Leu	p.W1198L	ENST00000375023	NM_004557.3	1198	tGg/tTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295221	1295221	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0080786-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			187	20	305	0				ENST00000310581	NM_198253.2																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0080828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	27	208	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0080828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	46	372	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0080828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	213	437	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857766	9857766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	104	576	0	ENST00000330684.3:c.3635C>T	p.Thr1212Met	p.T1212M	ENST00000330684	NM_001134407.1	1212	aCg/aTg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641217	23641217	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778586		P-0080828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	35	472	0	ENST00000261584.4:c.2258G>A	p.Arg753Gln	p.R753Q	ENST00000261584	NM_024675.3	753	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	45	252	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32184731	32184731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	113	461	0	ENST00000375023.3:c.1852G>T	p.Gly618Cys	p.G618C	ENST00000375023	NM_004557.3	618	Ggt/Tgt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120480608	120480608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	93	408	0	ENST00000256646.2:c.3209C>A	p.Ser1070Tyr	p.S1070Y	ENST00000256646	NM_024408.3	1070	tCt/tAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224533	36224533	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758088530		P-0080862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	29	460	1	ENST00000222270.7:c.6995G>A	p.Arg2332His	p.R2332H	ENST00000222270	NM_014727.1	2332	cGt/cAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231557	5231557	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150939732		P-0080862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	19	330	0	ENST00000357368.4:c.1919G>A	p.Arg640His	p.R640H	ENST00000357368	NM_002850.3	640	cGc/cAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038508	47038508	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781804786		P-0080862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	18	197	0	ENST00000329236.7:c.439G>A	p.Val147Ile	p.V147I	ENST00000329236	NM_001204466.1	147	Gtc/Atc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935520	13935520	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	25	350	0	ENST00000405192.2:c.1336del	p.His446ThrfsTer47	p.H446Tfs*47	ENST00000405192	NM_001163147.1	446	Cac/ac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425776	49425776	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs398123714		P-0080862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	18	468	0	ENST00000301067.7:c.12712C>T	p.Arg4238Cys	p.R4238C	ENST00000301067	NM_003482.3	4238	Cgc/Tgc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11264751	11264751	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1384864432		P-0080862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	27	326	0	ENST00000361445.4:c.3811G>A	p.Ala1271Thr	p.A1271T	ENST00000361445	NM_004958.3	1271	Gct/Act																																																																															
ALK	238	MSKCC	GRCh37	2	29498007	29498007	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs539763601		P-0080862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	23	410	1	ENST00000389048.3:c.1999G>A	p.Gly667Arg	p.G667R	ENST00000389048	NM_004304.4	667	Ggg/Agg																																																																															
FYN	2534	MSKCC	GRCh37	6	112041169	112041169	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766059845		P-0080862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	23	393	0	ENST00000368678.4:c.86G>A	p.Arg29His	p.R29H	ENST00000368678		29	cGc/cAc																																																																															
CIC	23152	MSKCC	GRCh37	19	42794511	42794511	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141023382		P-0080862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	22	477	2	ENST00000575354.2:c.1591G>A	p.Ala531Thr	p.A531T	ENST00000575354	NM_015125.3	531	Gcc/Acc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249490	153249490	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0080862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	22	349	0	ENST00000281708.4:c.1288A>T	p.Arg430Ter	p.R430*	ENST00000281708	NM_033632.3	430	Aga/Tga																																																																															
APLNR	187	MSKCC	GRCh37	11	57004208	57004208	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs200935550		P-0080862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	28	506	0	ENST00000257254.3:c.271C>T	p.Arg91Trp	p.R91W	ENST00000257254		91	Cgg/Tgg																																																																															
CIC	23152	MSKCC	GRCh37	19	42798330	42798330	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	23	412	0	ENST00000575354.2:c.4201G>T	p.Asp1401Tyr	p.D1401Y	ENST00000575354	NM_015125.3	1401	Gat/Tat																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099467	157099467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	37	451	0	ENST00000346085.5:c.404C>T	p.Ser135Phe	p.S135F	ENST00000346085	NM_020732.3	135	tCc/tTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8317935	8317935	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	14	317	0	ENST00000356435.5:c.5678A>G	p.Tyr1893Cys	p.Y1893C	ENST00000356435		1893	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0080864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	242	460	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0080915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	287	399	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0080915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	157	496	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0080915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	409	451	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88679226	88679226	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs879254049		P-0080915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	154	302	0	ENST00000372037.3:c.1166G>A	p.Ser389Asn	p.S389N	ENST00000372037	NM_004329.2	389	aGt/aAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	76	298	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114901013	114901014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0080915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	275	488	0	ENST00000543371.1:c.624dup	p.Glu209Ter	p.E209*	ENST00000543371	NM_001198531.1	208	aat/aaTt																																																																															
APC	324	MSKCC	GRCh37	5	112176365	112176365	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1027003095		P-0080915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	218	423	0	ENST00000257430.4:c.5074A>G	p.Thr1692Ala	p.T1692A	ENST00000257430	NM_000038.5	1692	Aca/Gca																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024078	31024078	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	265	496	0	ENST00000375687.4:c.3563T>C	p.Leu1188Pro	p.L1188P	ENST00000375687	NM_015338.5	1188	cTt/cCt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782037	9782037	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	251	504	0	ENST00000377346.4:c.2060A>G	p.Glu687Gly	p.E687G	ENST00000377346	NM_005026.3	687	gAa/gGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	218	295	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	103	188	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249702	110249702	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	19	256	0	ENST00000374672.4:c.973C>A	p.Leu325Met	p.L325M	ENST00000374672	NM_004235.4	325	Ctg/Atg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0080981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	79	241	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	78	218	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TOP1	7150	MSKCC	GRCh37	20	39706222	39706222	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0080981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	23	223	0	ENST00000361337.2:c.280G>C	p.Val94Leu	p.V94L	ENST00000361337	NM_003286.2	94	Gtt/Ctt																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800430	32800430	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754852132		P-0080981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	72	325	0	ENST00000374899.4:c.1117C>T	p.Arg373Cys	p.R373C	ENST00000374899	NM_018833.2	373	Cgc/Tgc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117869697	117869697	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	208	257	0	ENST00000297338.2:c.497A>G	p.Asp166Gly	p.D166G	ENST00000297338	NM_006265.2	166	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0080986-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	127	231	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175153	112175153	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0080986-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	66	282	1	ENST00000257430.4:c.3862G>T	p.Gly1288Ter	p.G1288*	ENST00000257430	NM_000038.5	1288	Gga/Tga																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041702	14041702	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748870665		P-0080986-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	57	291	0	ENST00000311895.7:c.2249G>A	p.Arg750His	p.R750H	ENST00000311895	NM_005236.2	750	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112163638	112163638	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080986-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	53	218	0	ENST00000257430.4:c.1561del	p.Ser521LeufsTer2	p.S521Lfs*2	ENST00000257430	NM_000038.5	521	Tct/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0080987-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	256	323	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797258	135797258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514834		P-0080987-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	158	218	1	ENST00000298552.3:c.611G>A	p.Arg204His	p.R204H	ENST00000298552	NM_001162426.1	204	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0080987-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	166	258	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180051024	180051024	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769840412		P-0080987-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	128	274	0	ENST00000261937.6:c.1459C>T	p.Arg487Cys	p.R487C	ENST00000261937	NM_182925.4	487	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175271	112175272	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0080987-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	154	267	0	ENST00000257430.4:c.3981dup	p.Gln1328ThrfsTer4	p.Q1328Tfs*4	ENST00000257430	NM_000038.5	1327	tca/tcAa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149516600	149516600	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144923639		P-0080987-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	123	199	0	ENST00000261799.4:c.11C>T	p.Pro4Leu	p.P4L	ENST00000261799	NM_002609.3	4	cCg/cTg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266924	18266924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080987-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	101	177	0	ENST00000222254.8:c.235G>A	p.Gly79Arg	p.G79R	ENST00000222254	NM_005027.3	79	Ggg/Agg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600446	10600446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	144	653	1	ENST00000171111.5:c.1409G>A	p.Arg470His	p.R470H	ENST00000171111	NM_203500.1	470	cGt/cAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189868	66189868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	31	488	0	ENST00000273854.3:c.3078G>A	p.Met1026Ile	p.M1026I	ENST00000273854	NM_004439.5	1026	atG/atA																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661726	227661726	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760281604		P-0080999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	31	609	0	ENST00000305123.5:c.1729G>A	p.Val577Met	p.V577M	ENST00000305123	NM_005544.2	577	Gtg/Atg																																																																															
NBN	4683	MSKCC	GRCh37	8	90955481	90955481	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0080999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	32	357	0	ENST00000265433.3:c.2184G>T	p.Glu728Asp	p.E728D	ENST00000265433	NM_002485.4	728	gaG/gaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	89	369	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858045	9858045	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	31	639	0	ENST00000330684.3:c.3356C>A	p.Thr1119Asn	p.T1119N	ENST00000330684	NM_001134407.1	1119	aCt/aAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151871280	151871280	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	72	480	0	ENST00000262189.6:c.9310del	p.Gly3106ValfsTer2	p.G3106Vfs*2	ENST00000262189	NM_170606.2	3104	Ctt/tt																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2047453	2047453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	63	473	0	ENST00000349721.2:c.1015C>T	p.Pro339Ser	p.P339S	ENST00000349721	NM_003070.3	339	Ccc/Tcc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144122	11144122	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	132	575	0	ENST00000344626.4:c.3703G>T	p.Asp1235Tyr	p.D1235Y	ENST00000344626	NM_003072.3	1235	Gac/Tac																																																																															
MSH2	4436	MSKCC	GRCh37	2	47656897	47656897	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	71	393	0	ENST00000233146.2:c.1093G>T	p.Ala365Ser	p.A365S	ENST00000233146	NM_000251.2	365	Gct/Tct																																																																															
STK11	6794	MSKCC	GRCh37	19	1223018	1223018	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	136	633	0	ENST00000326873.7:c.956del	p.Pro319GlnfsTer17	p.P319Qfs*17	ENST00000326873	NM_000455.4	319	Cca/ca																																																																															
KDM5A	5927	MSKCC	GRCh37	12	402082	402082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	157	601	1	ENST00000399788.2:c.4709C>T	p.Ala1570Val	p.A1570V	ENST00000399788	NM_001042603.1	1570	gCa/gTa																																																																															
ATRX	546	MSKCC	GRCh37	X	76937466	76937466	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0080999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	32	582	0	ENST00000373344.5:c.3282C>A	p.Cys1094Ter	p.C1094*	ENST00000373344	NM_000489.3	1094	tgC/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0081058-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	120	541	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081058-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	96	528	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925316	114925317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769592153		P-0081058-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	155	351	5	ENST00000543371.1:c.1403dup	p.Cys469ValfsTer8	p.C469Vfs*8	ENST00000543371	NM_001198531.1	465	aga/agAa																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006054	22006054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081058-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	109	540	0	ENST00000276925.6:c.349G>A	p.Val117Met	p.V117M	ENST00000276925	NM_004936.3	117	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0081058-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	39	331	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0081077-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	176	275	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16022773	16022773	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081077-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	47	340	3	ENST00000268712.3:c.1879C>T	p.Arg627Ter	p.R627*	ENST00000268712	NM_006311.3	627	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0081077-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	122	536	7	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602637	10602637	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777523734		P-0081077-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	30	471	2	ENST00000171111.5:c.941C>T	p.Thr314Met	p.T314M	ENST00000171111	NM_203500.1	314	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175609	112175609	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081077-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	110	574	3	ENST00000257430.4:c.4319del	p.Pro1440HisfsTer33	p.P1440Hfs*33	ENST00000257430	NM_000038.5	1440	Cca/ca																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569852	95569852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081077-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	79	495	4	ENST00000343455.3:c.3881C>T	p.Pro1294Leu	p.P1294L	ENST00000343455	NM_177438.2	1294	cCt/cTt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435241	56435241	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081077-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	105	569	0	ENST00000407977.2:c.1896C>G	p.Ile632Met	p.I632M	ENST00000407977		632	atC/atG																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146526	185146526	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	216	466	0	ENST00000265026.3:c.157C>T	p.Arg53Ter	p.R53*	ENST00000265026	NM_004721.4	53	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0081082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	290	364	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs775623976		P-0081082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	184	409	0	ENST00000335508.6:c.1873C>G	p.Arg625Gly	p.R625G	ENST00000335508	NM_012433.2	625	Cgt/Ggt																																																																															
APC	324	MSKCC	GRCh37	5	112174777	112174777	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0081082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	132	501	0	ENST00000257430.4:c.3486T>G	p.Tyr1162Ter	p.Y1162*	ENST00000257430	NM_000038.5	1162	taT/taG																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175355	+	frameshift_variant	Frame_Shift_Del	DEL	TTTTC	TTTTC	-			P-0081082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	154	454	0	ENST00000257430.4:c.4062_4066del	p.Ser1355ArgfsTer18	p.S1355Rfs*18	ENST00000257430	NM_000038.5	1354	TTTTCt/t																																																																															
MITF	4286	MSKCC	GRCh37	3	69988316	69988316	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747126448		P-0081082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	27	412	0	ENST00000352241.4:c.650G>A	p.Arg217Gln	p.R217Q	ENST00000352241	NM_198159.2	217	cGa/cAa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21619865	21619865	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762102440		P-0081082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	360	412	0	ENST00000382592.4:c.301C>T	p.Arg101Trp	p.R101W	ENST00000382592	NM_014572.2	101	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579440	7579440	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	331	678	0	ENST00000269305.4:c.247del	p.Ala83ArgfsTer40	p.A83Rfs*40	ENST00000269305	NM_001126112.2	83	Gcg/cg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	160	558	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	117	570	1	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	134	597	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	171	604	2	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	90	523	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs750808726		P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	117	619	1	ENST00000261937.6:c.1267dup	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																															
RB1	5925	MSKCC	GRCh37	13	48953730	48953730	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs3092891		P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	55	208	0	ENST00000267163.4:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000267163	NM_000321.2	445	Cga/Tga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330629	65330630	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	116	510	1	ENST00000342505.4:c.1016dup	p.Asn339LysfsTer2	p.N339Kfs*2	ENST00000342505	NM_002227.2	339	aat/aaAt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15989668	15989669	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	110	541	0	ENST00000268712.3:c.3104dup	p.Leu1036SerfsTer35	p.L1036Sfs*35	ENST00000268712	NM_006311.3	1035	cct/ccCt																																																																															
APC	324	MSKCC	GRCh37	5	112176675	112176676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	99	510	0	ENST00000257430.4:c.5390dup	p.Asn1797LysfsTer2	p.N1797Kfs*2	ENST00000257430	NM_000038.5	1795	tca/tcAa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964014	28964014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	98	455	0	ENST00000282397.4:c.1888G>A	p.Asp630Asn	p.D630N	ENST00000282397	NM_002019.4	630	Gat/Aat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447772	49447773	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	119	497	0	ENST00000301067.7:c.661dup	p.Ala221GlyfsTer13	p.A221Gfs*13	ENST00000301067	NM_003482.3	221	gct/gGct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433950	49433950	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780306423		P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	135	561	0	ENST00000301067.7:c.7603C>T	p.Arg2535Cys	p.R2535C	ENST00000301067	NM_003482.3	2535	Cgt/Tgt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678518	88678518	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	112	481	0	ENST00000360948.2:c.1018C>T	p.Gln340Ter	p.Q340*	ENST00000360948	NM_001012338.2	340	Cag/Tag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214059	36214059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	120	516	0	ENST00000222270.7:c.2885G>A	p.Arg962His	p.R962H	ENST00000222270	NM_014727.1	962	cGc/cAc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032606	12032606	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	122	380	0	ENST00000353533.5:c.1040+2T>C		p.X347_splice	ENST00000353533	NM_003010.3	347																																																																																
USP8	9101	MSKCC	GRCh37	15	50773879	50773880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	114	529	3	ENST00000307179.4:c.1427dup	p.Asn476LysfsTer35	p.N476Kfs*35	ENST00000307179		474	gaa/gAaa																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231487255	231487256	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs752960031		P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	117	484	2	ENST00000295050.7:c.663dup	p.Gly222ArgfsTer18	p.G222Rfs*18	ENST00000295050	NM_032018.5	219	tca/tcAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374938	118374939	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	123	506	0	ENST00000534358.1:c.8336dup	p.Asn2779LysfsTer2	p.N2779Kfs*2	ENST00000534358	NM_005933.3	2777	-/A																																																																															
RARA	5914	MSKCC	GRCh37	17	38508622	38508622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	127	509	0	ENST00000254066.5:c.670C>T	p.Leu224Phe	p.L224F	ENST00000254066	NM_000964.3	224	Ctc/Ttc																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225734	26225734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	125	599	0	ENST00000360408.1:c.352G>A	p.Val118Met	p.V118M	ENST00000360408	NM_003532.2	118	Gtg/Atg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045170	47045170	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	125	505	0	ENST00000329236.7:c.2177T>C	p.Leu726Pro	p.L726P	ENST00000329236	NM_001204466.1	726	cTa/cCa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223388	53223388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	97	469	0	ENST00000375401.3:c.3971C>T	p.Pro1324Leu	p.P1324L	ENST00000375401	NM_004187.3	1324	cCt/cTt																																																																															
ATRX	546	MSKCC	GRCh37	X	76888693	76888693	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	65	389	0	ENST00000373344.5:c.5134+2T>C		p.X1712_splice	ENST00000373344	NM_000489.3	1712																																																																																
ARHGAP35	2909	MSKCC	GRCh37	19	47424781	47424781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	120	468	0	ENST00000404338.3:c.2849C>T	p.Ala950Val	p.A950V	ENST00000404338	NM_004491.4	950	gCt/gTt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162722966	162722966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	128	379	0	ENST00000367921.3:c.164C>T	p.Ser55Phe	p.S55F	ENST00000367921	NM_006182.2	55	tCc/tTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991923	72991923	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	118	512	0	ENST00000268489.5:c.2122C>T	p.Gln708Ter	p.Q708*	ENST00000268489	NM_006885.3	708	Cag/Tag																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51507300	51507301	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	94	409	0	ENST00000260433.2:c.987dup	p.Glu330ArgfsTer13	p.E330Rfs*13	ENST00000260433		329	-/A																																																																															
CDH1	999	MSKCC	GRCh37	16	68842649	68842650	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	135	542	0	ENST00000261769.5:c.587dup	p.Ala197SerfsTer2	p.A197Sfs*2	ENST00000261769	NM_004360.3	195	-/G																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739768	41739768	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	109	408	0	ENST00000242208.4:c.205A>G	p.Lys69Glu	p.K69E	ENST00000242208	NM_002192.2	69	Aag/Gag																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439766	51439766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	127	520	0	ENST00000262662.1:c.331G>A	p.Ala111Thr	p.A111T	ENST00000262662		111	Gcc/Acc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361226	66361226	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	119	423	0	ENST00000273854.3:c.946A>G	p.Ile316Val	p.I316V	ENST00000273854	NM_004439.5	316	Atc/Gtc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044590	47044590	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	120	702	0	ENST00000329236.7:c.1853T>C	p.Ile618Thr	p.I618T	ENST00000329236	NM_001204466.1	618	aTc/aCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0081122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	208	324	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0081122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	265	500	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604765	48604766	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0081122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	120	514	0	ENST00000342988.3:c.1589_1590del	p.His530ProfsTer46	p.H530Pfs*46	ENST00000342988	NM_005359.5	529	ttACac/ttac																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0081122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	359	282	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0081122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			835	148	558	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430269	181430269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	188	425	0	ENST00000325404.1:c.121G>A	p.Val41Ile	p.V41I	ENST00000325404	NM_003106.3	41	Gtc/Atc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39021187	39021187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	160	377	0	ENST00000357387.3:c.149G>A	p.Gly50Glu	p.G50E	ENST00000357387	NM_152756.3	50	gGa/gAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	194	266	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PARK2	5071	MSKCC	GRCh37	6	161807881	161807881	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375036403		P-0081124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	41	385	1	ENST00000366898.1:c.1112C>T	p.Ala371Val	p.A371V	ENST00000366898	NM_004562.2	371	gCg/gTg																																																																															
ATM	472	MSKCC	GRCh37	11	108183201	108183210	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAGAAACT	AGAAGAAACT	-			P-0081124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	128	357	0	ENST00000278616.4:c.5982_5991del	p.Glu1996Ter	p.E1996*	ENST00000278616	NM_000051.3	1994	aaAGAAGAAACT/aa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603129	48603130	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0081124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	173	335	0	ENST00000342988.3:c.1432dup	p.Ile478AsnfsTer16	p.I478Nfs*16	ENST00000342988	NM_005359.5	477	gga/ggAa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0081125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	37	493	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0081125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	45	708	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753660142		P-0081125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	19	537	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226064	53226064	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs782405999		P-0081125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	13	292	0	ENST00000375401.3:c.2785C>T	p.Arg929Ter	p.R929*	ENST00000375401	NM_004187.3	929	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781375	3781375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	35	580	0	ENST00000262367.5:c.4990C>T	p.Arg1664Cys	p.R1664C	ENST00000262367	NM_004380.2	1664	Cgc/Tgc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223769	53223769	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376572303		P-0081125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	22	329	1	ENST00000375401.3:c.3590C>T	p.Ala1197Val	p.A1197V	ENST00000375401	NM_004187.3	1197	gCg/gTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076932	41076932	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	24	472	0	ENST00000373198.4:c.1488del	p.Phe498LeufsTer103	p.F498Lfs*103	ENST00000373198	NM_133170.3	496	ggG/gg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972653	25972653	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146506022		P-0081125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	22	592	0	ENST00000435504.4:c.1772G>A	p.Arg591His	p.R591H	ENST00000435504		591	cGc/cAc																																																																															
BTK	695	MSKCC	GRCh37	X	100611203	100611203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	13	223	0	ENST00000308731.7:c.1403G>A	p.Arg468His	p.R468H	ENST00000308731	NM_000061.2	468	cGc/cAc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748140	41748140	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1442934701		P-0081125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	19	522	0	ENST00000226382.2:c.629C>T	p.Ala210Val	p.A210V	ENST00000226382	NM_003924.3	210	gCg/gTg																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652527	48652527	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	17	267	0	ENST00000376670.3:c.1203del	p.Thr402ProfsTer30	p.T402Pfs*30	ENST00000376670	NM_002049.3	400	Ccc/cc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426532	47426532	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0081125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	26	360	0	ENST00000377045.4:c.873+2T>C		p.X291_splice	ENST00000377045	NM_001654.4	291																																																																																
XIAP	331	MSKCC	GRCh37	X	123034427	123034427	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	16	195	0	ENST00000355640.3:c.1184A>G	p.Glu395Gly	p.E395G	ENST00000355640		395	gAa/gGa																																																																															
MET	4233	MSKCC	GRCh37	7	116411944	116411944	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0081125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			782	43	653	0	ENST00000397752.3:c.2929A>C	p.Thr977Pro	p.T977P	ENST00000397752	NM_000245.2	977	Act/Cct																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44913181	44913181	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	17	232	0	ENST00000377967.4:c.856T>C	p.Ser286Pro	p.S286P	ENST00000377967	NM_021140.2	286	Tcc/Ccc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424106	49424106	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	26	409	0	ENST00000301067.7:c.13956del	p.Lys4653ArgfsTer13	p.K4653Rfs*13	ENST00000301067	NM_003482.3	4652	ccC/cc																																																																															
AR	367	MSKCC	GRCh37	X	66941691	66941691	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0081125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	21	251	0	ENST00000374690.3:c.2335T>A	p.Ser779Thr	p.S779T	ENST00000374690	NM_000044.3	779	Tcc/Acc																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230492779	230492779	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1311026622		P-0081125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	29	541	0	ENST00000525115.1:c.413G>A	p.Arg138His	p.R138H	ENST00000525115		138	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0081135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	233	276	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940216	71940216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	96	313	0	ENST00000298229.2:c.601G>T	p.Ala201Ser	p.A201S	ENST00000298229	NM_001567.3	201	Gcc/Tcc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2202777	2202777	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0081135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	107	270	0	ENST00000398665.3:c.786A>C	p.Glu262Asp	p.E262D	ENST00000398665	NM_032482.2	262	gaA/gaC																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84406219	84406219	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs370520589		P-0081135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	19	194	0	ENST00000321945.7:c.7G>C	p.Gly3Arg	p.G3R	ENST00000321945	NM_139076.2	3	Ggg/Cgg																																																																															
TRIP13	9319	MSKCC	GRCh37	5	912075	912075	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1697	118	317	0	ENST00000166345.3:c.984C>G	p.Phe328Leu	p.F328L	ENST00000166345	NM_004237.3	328	ttC/ttG																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984046	2984046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	213	265	0	ENST00000396946.4:c.484G>A	p.Glu162Lys	p.E162K	ENST00000396946	NM_032415.4	162	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0081137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	125	403	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
ATM	472	MSKCC	GRCh37	11	108164163	108164164	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0081137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	50	300	0	ENST00000278616.4:c.4741dup	p.Ile1581AsnfsTer5	p.I1581Nfs*5	ENST00000278616	NM_000051.3	1579	caa/cAaa																																																																															
MSH3	4437	MSKCC	GRCh37	5	80109527	80109527	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766261257		P-0081137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	64	317	0	ENST00000265081.6:c.2780C>T	p.Ala927Val	p.A927V	ENST00000265081	NM_002439.4	927	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	141	231	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187519244	187519244	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0081137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	64	297	0	ENST00000441802.2:c.12139A>T	p.Thr4047Ser	p.T4047S	ENST00000441802	NM_005245.3	4047	Acc/Tcc																																																																															
MPL	4352	MSKCC	GRCh37	1	43818286	43818286	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	141	493	3	ENST00000372470.3:c.1751C>A	p.Ser584Tyr	p.S584Y	ENST00000372470	NM_005373.2	584	tCc/tAc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016558	12016558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	43	303	0	ENST00000353533.5:c.694C>A	p.Pro232Thr	p.P232T	ENST00000353533	NM_003010.3	232	Cct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	95	319	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971148	21971214	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAG	GGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAG	-			P-0081141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	66	421	0	ENST00000304494.5:c.151-7_210del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48581271	48581272	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0081141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	84	413	0	ENST00000342988.3:c.576dup	p.Glu193ArgfsTer13	p.E193Rfs*13	ENST00000342988	NM_005359.5	192	aca/acAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444784	49444784	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	59	557	0	ENST00000301067.7:c.2682del	p.Leu894PhefsTer36	p.L894Ffs*36	ENST00000301067	NM_003482.3	894	ttG/tt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0081143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	184	583	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266828	198266828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs16865307		P-0081143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	149	334	0	ENST00000335508.6:c.2104C>T	p.Arg702Trp	p.R702W	ENST00000335508	NM_012433.2	702	Cgg/Tgg																																																																															
AR	367	MSKCC	GRCh37	X	66905906	66905906	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137852573		P-0081143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	97	187	0	ENST00000374690.3:c.1823G>A	p.Arg608Gln	p.R608Q	ENST00000374690	NM_000044.3	608	cGa/cAa																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33680085	33680085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771227424		P-0081143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	67	241	1	ENST00000308377.4:c.1996G>A	p.Val666Ile	p.V666I	ENST00000308377	NM_152270.3	666	Gtc/Atc																																																																															
USP8	9101	MSKCC	GRCh37	15	50789428	50789428	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0081143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	51	331	0	ENST00000307179.4:c.3038G>A	p.Arg1013His	p.R1013H	ENST00000307179		1013	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112173537	112173538	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCATCTCTTCATGTTAGGAAACAAAAAGCCCTAGAAGCAGAATTAGATGCTCAGCACTTATCAA			P-0081143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	82	435	0	ENST00000257430.4:c.2310_2311insAGCCATCTCTTCATGTTAGGAAACAAAAAGCCCTAGAAGCAGAATTAGATGCTCAGCACTTATCA	p.Glu771SerfsTer12	p.E771Sfs*12	ENST00000257430	NM_000038.5	749	ttg/ttGCCATCTCTTCATGTTAGGAAACAAAAAGCCCTAGAAGCAGAATTAGATGCTCAGCACTTATCAAg																																																																															
CDH1	999	MSKCC	GRCh37	16	68835596	68835596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587783047		P-0081149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			762	42	473	0	ENST00000261769.5:c.187C>T	p.Arg63Ter	p.R63*	ENST00000261769	NM_004360.3	63	Cga/Tga																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2220704	2220704	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			806	53	516	0	ENST00000326181.6:c.321C>A	p.Phe107Leu	p.F107L	ENST00000326181	NM_032271.2	107	ttC/ttA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578179	7578179	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0081150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	112	536	0	ENST00000269305.4:c.670G>T	p.Glu224Ter	p.E224*	ENST00000269305	NM_001126112.2	224	Gag/Tag																																																																															
ATR	545	MSKCC	GRCh37	3	142176461	142176461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	92	301	0	ENST00000350721.4:c.7640G>A	p.Arg2547Gln	p.R2547Q	ENST00000350721	NM_001184.3	2547	cGa/cAa																																																																															
RB1	5925	MSKCC	GRCh37	13	49037956	49037965	+	frameshift_variant	Frame_Shift_Del	DEL	TCATGCTGTT	TCATGCTGTT	-			P-0081150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	63	196	0	ENST00000267163.4:c.2196_2205del	p.His733ArgfsTer8	p.H733Rfs*8	ENST00000267163	NM_000321.2	732	ccTCATGCTGTT/cc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95572526	95572526	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	15	426	0	ENST00000343455.3:c.2839G>T	p.Val947Leu	p.V947L	ENST00000343455	NM_177438.2	947	Gta/Tta																																																																															
MSH3	4437	MSKCC	GRCh37	5	80021375	80021375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	87	244	0	ENST00000265081.6:c.1444G>A	p.Asp482Asn	p.D482N	ENST00000265081	NM_002439.4	482	Gac/Aac																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413055	63413055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	98	540	0	ENST00000330258.3:c.112G>A	p.Glu38Lys	p.E38K	ENST00000330258	NM_152424.3	38	Gaa/Aaa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729875	30729875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0081150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	135	445	0	ENST00000359013.4:c.1472-1G>A		p.X491_splice	ENST00000359013	NM_001024847.2	491																																																																																
EGFR	1956	MSKCC	GRCh37	7	55220349	55220349	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs780001754		P-0081150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	76	292	0	ENST00000275493.2:c.739G>C	p.Asp247His	p.D247H	ENST00000275493	NM_005228.3	247	Gac/Cac																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871758	12871758	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0081150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	103	413	0	ENST00000228872.4:c.476-1G>A		p.X159_splice	ENST00000228872	NM_004064.3	159																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151853118	151853118	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	91	462	0	ENST00000262189.6:c.11837del	p.Pro3946HisfsTer41	p.P3946Hfs*41	ENST00000262189	NM_170606.2	3946	cCa/ca																																																																															
MGA	23269	MSKCC	GRCh37	15	41961786	41961786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	73	542	0	ENST00000219905.7:c.694G>A	p.Glu232Lys	p.E232K	ENST00000219905	NM_001164273.1	232	Gaa/Aaa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941280	71941280	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	122	696	0	ENST00000298229.2:c.1057del	p.Gln353ArgfsTer59	p.Q353Rfs*59	ENST00000298229	NM_001567.3	352	tCc/tc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717746	89717748	+	frameshift_variant	Frame_Shift_Del	DEL	CTT	CTT	G			P-0081150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	83	339	0	ENST00000371953.3:c.771_773delinsG	p.Phe257LeufsTer40	p.F257Lfs*40	ENST00000371953	NM_000314.4	257	ttCTTc/ttGc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs193920894		P-0081173-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	90	295	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39285908	39285908	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081173-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	63	166	0	ENST00000402219.2:c.251A>G	p.Lys84Arg	p.K84R	ENST00000402219	NM_005633.3	84	aAa/aGa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061231	38061239	+	inframe_deletion	In_Frame_Del	DEL	ATGTTGCCG	ATGTTGCCG	-			P-0081173-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	104	335	0	ENST00000250448.2:c.750_758del	p.Gly251_Met253del	p.G251_M253del	ENST00000250448	NM_004496.3	250	tcCGGCAACATg/tcg																																																																															
AXL	558	MSKCC	GRCh37	19	41765597	41765597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081173-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	113	341	0	ENST00000301178.4:c.2473G>A	p.Asp825Asn	p.D825N	ENST00000301178	NM_021913.4	825	Gat/Aat																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740606	145740606	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081173-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	181	388	0	ENST00000428558.2:c.1411del	p.Gln471ArgfsTer87	p.Q471Rfs*87	ENST00000428558	NM_004260.3	471	Cag/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0081174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	96	415	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0081174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	108	263	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175788	112175788	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	58	303	0	ENST00000257430.4:c.4497del	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1499	ggA/gg																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	77	279	0	ENST00000257430.4:c.4063del	p.Ser1355LeufsTer60	p.S1355Lfs*60	ENST00000257430	NM_000038.5	1354	Ttt/tt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	14	283	0	ENST00000269305.4:c.380C>A	p.Ser127Tyr	p.S127Y	ENST00000269305	NM_001126112.2	127	tCc/tAc																																																																															
ATM	472	MSKCC	GRCh37	11	108129712	108129712	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0081175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	55	174	0	ENST00000278616.4:c.2377-1G>C		p.X793_splice	ENST00000278616	NM_000051.3	793																																																																																
CDKN1B	1027	MSKCC	GRCh37	12	12870778	12870778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	76	189	0	ENST00000228872.4:c.5C>T	p.Ser2Leu	p.S2L	ENST00000228872	NM_004064.3	2	tCa/tTa																																																																															
KLF5	688	MSKCC	GRCh37	13	73636792	73636792	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	161	350	0	ENST00000377687.4:c.1055A>G	p.Gln352Arg	p.Q352R	ENST00000377687	NM_001730.3	352	cAa/cGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0081176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	53	363	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061313	38061313	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1204900727		P-0081176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	121	441	0	ENST00000250448.2:c.676G>A	p.Asp226Asn	p.D226N	ENST00000250448	NM_004496.3	226	Gac/Aac																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683694	162683694	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs566229879		P-0081176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	243	357	0	ENST00000366898.1:c.275C>T	p.Ala92Val	p.A92V	ENST00000366898	NM_004562.2	92	gCg/gTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202131311	202131311	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	98	385	0	ENST00000358485.4:c.279G>T	p.Lys93Asn	p.K93N	ENST00000358485	NM_001080125.1	93	aaG/aaT																																																																															
APC	324	MSKCC	GRCh37	5	112157650	112157650	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs1060503333		P-0081178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	75	177	0	ENST00000257430.4:c.1370C>G	p.Ser457Ter	p.S457*	ENST00000257430	NM_000038.5	457	tCa/tGa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	27	256	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112175213	112175213	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0081178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	138	257	0	ENST00000257430.4:c.3922A>T	p.Lys1308Ter	p.K1308*	ENST00000257430	NM_000038.5	1308	Aaa/Taa																																																																															
EP300	2033	MSKCC	GRCh37	22	41572351	41572351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	164	282	0	ENST00000263253.7:c.4880G>A	p.Arg1627Gln	p.R1627Q	ENST00000263253	NM_001429.3	1627	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0081178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	69	176	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858363	27858363	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746466177		P-0081178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	39	396	0	ENST00000359303.2:c.208C>T	p.Arg70Cys	p.R70C	ENST00000359303	NM_003535.2	70	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274218	5274218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	40	298	0	ENST00000357368.4:c.229C>T	p.Arg77Cys	p.R77C	ENST00000357368	NM_002850.3	77	Cgc/Tgc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120247	70120247	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs886043831		P-0081180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	120	322	0	ENST00000245479.2:c.1249C>T	p.Gln417Ter	p.Q417*	ENST00000245479	NM_000346.3	417	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	71	217	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61308113	61308113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	18	100	0	ENST00000341074.5:c.464C>T	p.Thr155Met	p.T155M	ENST00000341074	NM_002974.2	155	aCg/aTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916860	178916862	+	missense_variant	Missense_Mutation	ONP	TTT	TTT	AAA			P-0081180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	33	279	0	ENST00000263967.3:c.247_249inv	p.Phe83Lys	p.F83K	ENST00000263967	NM_006218.2	83	TTT/AAA																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940725	71940725	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	116	337	0	ENST00000298229.2:c.772G>C	p.Glu258Gln	p.E258Q	ENST00000298229	NM_001567.3	258	Gag/Cag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265782	41266409	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAA	CTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAA	-			P-0081180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	84	60	0	ENST00000349496.5:c.13+213_242-33del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
PIK3C2G	5288	MSKCC	GRCh37	12	18716320	18716320	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0081180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	75	267	0	ENST00000266497.5:c.3667A>C	p.Ile1223Leu	p.I1223L	ENST00000266497		1223	Atc/Ctc																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006096	22006096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	103	298	0	ENST00000276925.6:c.307G>A	p.Gly103Arg	p.G103R	ENST00000276925	NM_004936.3	103	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519997		P-0081190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	194	440	0	ENST00000269305.4:c.332T>A	p.Leu111Gln	p.L111Q	ENST00000269305	NM_001126112.2	111	cTg/cAg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41256949	41256949	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs886040030		P-0081190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	148	285	0	ENST00000357654.3:c.237del	p.Phe79LeufsTer9	p.F79Lfs*9	ENST00000357654	NM_007294.3	79	ttT/tt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366205	15366205	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	79	380	0	ENST00000263377.2:c.1950C>G	p.Asp650Glu	p.D650E	ENST00000263377	NM_058243.2	650	gaC/gaG																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211840	36211840	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	180	504	0	ENST00000222270.7:c.1591G>C	p.Val531Leu	p.V531L	ENST00000222270	NM_014727.1	531	Gtg/Ctg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027139	48027139	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs377356882		P-0081190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	68	395	0	ENST00000234420.5:c.2017C>G	p.Pro673Ala	p.P673A	ENST00000234420	NM_000179.2	673	Cca/Gca																																																																															
XPO1	7514	MSKCC	GRCh37	2	61749698	61749789	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATGCCAGGAAAAACAAAACTCTGAATTTATAATTCTTTATTTTCCTACCTTCGCACTGGTTCCTTGGAAGAATCTTCCACCTTGTTTTTATC	ATGCCAGGAAAAACAAAACTCTGAATTTATAATTCTTTATTTTCCTACCTTCGCACTGGTTCCTTGGAAGAATCTTCCACCTTGTTTTTATC	-			P-0081190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	61	226	0	ENST00000401558.2:c.258_301+48del		p.X86_splice	ENST00000401558	NM_003400.3	86																																																																																
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0081192-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	26	385	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081192-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	52	459	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852217		P-0081192-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			797	43	474	0	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175909	112175909	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0081192-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	134	430	0	ENST00000257430.4:c.4618G>T	p.Glu1540Ter	p.E1540*	ENST00000257430	NM_000038.5	1540	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175512	112175512	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081192-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	141	419	0	ENST00000257430.4:c.4221del	p.Ser1407ArgfsTer8	p.S1407Rfs*8	ENST00000257430	NM_000038.5	1407	agT/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081192-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	104	263	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577506	7577507	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTCCAGTG			P-0081192-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	48	345	0	ENST00000269305.4:c.767_774dup	p.Asp259HisfsTer89	p.D259Hfs*89	ENST00000269305	NM_001126112.2	258	-/CACTGGAA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411770	63411770	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081192-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	93	480	0	ENST00000330258.3:c.1397del	p.Asn466IlefsTer75	p.N466Ifs*75	ENST00000330258	NM_152424.3	466	aAt/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0081262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	57	298	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214592	5214592	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369295620		P-0081262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	64	505	0	ENST00000357368.4:c.4474C>T	p.Arg1492Trp	p.R1492W	ENST00000357368	NM_002850.3	1492	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0081262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	79	472	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0081262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	57	365	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0081262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	102	507	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900164	101900164	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	75	352	0	ENST00000374994.4:c.598A>G	p.Thr200Ala	p.T200A	ENST00000374994	NM_004612.2	200	Aca/Gca																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101867489	101867489	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0081262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	44	295	0	ENST00000374994.4:c.2T>A	p.Met1?	p.M1?	ENST00000374994	NM_004612.2	1	aTg/aAg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061226	38061237	+	inframe_deletion	In_Frame_Del	DEL	CGAACATGTTGC	CGAACATGTTGC	-			P-0081266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	192	562	0	ENST00000250448.2:c.752_763del	p.Gly251_Phe254del	p.G251_F254del	ENST00000250448	NM_004496.3	251	gGCAACATGTTCGag/gag																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073616	8073616	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760980466		P-0081266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	210	585	0	ENST00000377482.5:c.1043C>T	p.Pro348Leu	p.P348L	ENST00000377482	NM_018948.3	348	cCg/cTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513180	106513180	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	200	496	0	ENST00000359195.3:c.2084T>C	p.Leu695Ser	p.L695S	ENST00000359195	NM_002649.2	695	tTg/tCg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266098	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0081266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	260	602	0	ENST00000349496.5:c.94_95delinsTT	p.Asp32Phe	p.D32F	ENST00000349496	NM_001904.3	32	GAc/TTc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118915	70118928	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCAGCACAAGAA	GTGCAGCACAAGAA	TCC			P-0081266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	247	788	0	ENST00000245479.2:c.487_500delinsTCC	p.Val163SerfsTer85	p.V163Sfs*85	ENST00000245479	NM_000346.3	163	GTGCAGCACAAGAAg/TCCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0081274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	125	294	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0081274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	44	507	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579349	7579349	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	107	487	0	ENST00000269305.4:c.338T>C	p.Phe113Ser	p.F113S	ENST00000269305	NM_001126112.2	113	tTc/tCc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604797	48604797	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0081274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	52	451	0	ENST00000342988.3:c.1619T>G	p.Leu540Arg	p.L540R	ENST00000342988	NM_005359.5	540	cTt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517202		P-0081274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	13	430	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521516	187521516	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0081274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	33	303	0	ENST00000441802.2:c.11641-2A>G		p.X3881_splice	ENST00000441802	NM_005245.3	3881																																																																																
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0081274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	205	491	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048796	180048796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	46	521	0	ENST00000261937.6:c.1766G>A	p.Arg589His	p.R589H	ENST00000261937	NM_182925.4	589	cGc/cAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411411	63411411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	147	282	0	ENST00000330258.3:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000330258	NM_152424.3	586	Cga/Tga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15965560	15965560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	84	403	0	ENST00000268712.3:c.5246del	p.Gly1749AlafsTer13	p.G1749Afs*13	ENST00000268712	NM_006311.3	1749	gGc/gc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573546	48573547	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0081274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	28	455	0	ENST00000342988.3:c.131dup	p.Lys46GlufsTer8	p.K46Efs*8	ENST00000342988	NM_005359.5	44	gta/gTta																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144165	55144165	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	38	304	0	ENST00000257290.5:c.1994C>A	p.Thr665Asn	p.T665N	ENST00000257290	NM_006206.4	665	aCc/aAc																																																																															
APC	324	MSKCC	GRCh37	5	112174739	112174739	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	50	484	0	ENST00000257430.4:c.3448del	p.Glu1150LysfsTer15	p.E1150Kfs*15	ENST00000257430	NM_000038.5	1150	Gaa/aa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6045589	6045589	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0081274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	20	184	0	ENST00000265849.7:c.97C>G	p.Leu33Val	p.L33V	ENST00000265849	NM_000535.5	33	Ctg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0081277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	389	319	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
MAX	4149	MSKCC	GRCh37	14	65569056	65569056	+	start_lost	Translation_Start_Site	SNP	A	A	C			P-0081277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			15	326	330	0	ENST00000358664.4:c.2T>G	p.Met1?	p.M1?	ENST00000358664	NM_002382.4	1	aTg/aGg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356166	66356166	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1244629027		P-0081277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	234	446	0	ENST00000273854.3:c.1331T>C	p.Val444Ala	p.V444A	ENST00000273854	NM_004439.5	444	gTg/gCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0081287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	21	425	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578485	7578485	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1064793929		P-0081287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	46	661	0	ENST00000269305.4:c.445del	p.Ser149ProfsTer21	p.S149Pfs*21	ENST00000269305	NM_001126112.2	149	Tcc/cc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151864446	151864446	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	43	438	0	ENST00000262189.6:c.9535C>T	p.Gln3179Ter	p.Q3179*	ENST00000262189	NM_170606.2	3179	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0074337-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	146	290	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464473	25464473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074337-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	56	357	0	ENST00000264709.3:c.2040G>T	p.Lys680Asn	p.K680N	ENST00000264709	NM_175629.2	680	aaG/aaT																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391197	139391221	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCCACACTCCCCCGCAGAGGGTT	GTGCCACACTCCCCCGCAGAGGGTT	-			P-0074337-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	68	482	0	ENST00000277541.6:c.6970_6994del	p.Asn2324GlnfsTer4	p.N2324Qfs*4	ENST00000277541	NM_017617.3	2324	AACCCTCTGCGGGGGAGTGTGGCACca/ca																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121074	29121074	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074337-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	91	350	0	ENST00000328354.6:c.483A>T	p.Glu161Asp	p.E161D	ENST00000328354	NM_007194.3	161	gaA/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0080727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	229	499	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0080727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	212	492	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0080727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	198	283	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936004	49936004	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	208	468	0	ENST00000296474.3:c.1666A>C	p.Lys556Gln	p.K556Q	ENST00000296474	NM_002447.2	556	Aag/Cag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356334	66356334	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	145	432	0	ENST00000273854.3:c.1163A>T	p.Asp388Val	p.D388V	ENST00000273854	NM_004439.5	388	gAc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578446	7578446	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	54	485	0	ENST00000269305.4:c.484A>T	p.Ile162Phe	p.I162F	ENST00000269305	NM_001126112.2	162	Atc/Ttc																																																																															
PGR	5241	MSKCC	GRCh37	11	100920694	100920694	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	67	337	0	ENST00000325455.5:c.2454C>A	p.Phe818Leu	p.F818L	ENST00000325455	NM_001202474.3	818	ttC/ttA																																																																															
CYLD	1540	MSKCC	GRCh37	16	50828227	50828227	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	51	403	0	ENST00000398568.2:c.2565T>G	p.Asn855Lys	p.N855K	ENST00000398568	NM_001042412.1	855	aaT/aaG																																																																															
ALK	238	MSKCC	GRCh37	2	29430083	29430083	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	126	363	0	ENST00000389048.3:c.3892C>A	p.Pro1298Thr	p.P1298T	ENST00000389048	NM_004304.4	1298	Cca/Aca																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647173	23647173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	70	447	0	ENST00000261584.4:c.694G>A	p.Gly232Ser	p.G232S	ENST00000261584	NM_024675.3	232	Ggt/Agt																																																																															
ATRX	546	MSKCC	GRCh37	X	76813108	76813108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	52	359	0	ENST00000373344.5:c.6513G>T	p.Met2171Ile	p.M2171I	ENST00000373344	NM_000489.3	2171	atG/atT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0080934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	105	325	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497188	149497189	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0080934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	37	386	0	ENST00000261799.4:c.3129_3130delinsAA	p.Ser1043_Leu1044delinsArgIle	p.S1043_L1044delinsRI	ENST00000261799	NM_002609.3	1043	agCCta/agAAta																																																																															
ATRX	546	MSKCC	GRCh37	X	76812986	76812986	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	64	396	0	ENST00000373344.5:c.6635C>G	p.Pro2212Arg	p.P2212R	ENST00000373344	NM_000489.3	2212	cCa/cGa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81925157	81925157	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	84	362	0	ENST00000359376.3:c.948C>A	p.Asn316Lys	p.N316K	ENST00000359376	NM_002661.3	316	aaC/aaA																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372127	55372127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	27	454	0	ENST00000297316.4:c.817C>G	p.Arg273Gly	p.R273G	ENST00000297316	NM_022454.3	273	Cga/Gga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11206832	11206832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	108	370	1	ENST00000361445.4:c.4587G>T	p.Met1529Ile	p.M1529I	ENST00000361445	NM_004958.3	1529	atG/atT																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0080939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	111	336	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
MYC	4609	MSKCC	GRCh37	8	128752836	128752836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	183	420	0	ENST00000377970.2:c.997G>A	p.Asp333Asn	p.D333N	ENST00000377970	NM_002467.4	333	Gac/Aac																																																																															
AXL	558	MSKCC	GRCh37	19	41737171	41737171	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1051415960		P-0080939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	150	405	0	ENST00000301178.4:c.751G>A	p.Gly251Ser	p.G251S	ENST00000301178	NM_021913.4	251	Ggc/Agc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138197171	138197171	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751503246		P-0080939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	158	455	0	ENST00000237289.4:c.673G>A	p.Ala225Thr	p.A225T	ENST00000237289	NM_001270507.1	225	Gcc/Acc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628643	187628643	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	170	465	0	ENST00000441802.2:c.2339T>A	p.Leu780His	p.L780H	ENST00000441802	NM_005245.3	780	cTt/cAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351013	89351013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	162	393	0	ENST00000301030.4:c.1937G>A	p.Cys646Tyr	p.C646Y	ENST00000301030	NM_001256183.1	646	tGt/tAt																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271554	26271554	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	204	479	0	ENST00000305910.3:c.59A>T	p.Gln20Leu	p.Q20L	ENST00000305910	NM_003534.2	20	cAg/cTg																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33434458	33434458	+	intron_variant	Intron	SNP	T	T	G			P-0080939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	257	352	0	ENST00000335858.7:c.145-958A>C		p.*49*	ENST00000335858	NM_133629.2																																																																																	
RPS6KB2	6199	MSKCC	GRCh37	11	67196632	67196632	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1405707464		P-0080939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	148	413	0	ENST00000312629.5:c.161G>A	p.Ser54Asn	p.S54N	ENST00000312629	NM_003952.2	54	aGc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0080940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	23	373	0	ENST00000269305.4:c.375+1del		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	12	326	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593461	48593462	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	CACTGA			P-0080940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	28	420	0	ENST00000342988.3:c.1215_1216insTGACAC	p.His405_Ala406insTer	p.H405_A406ins*	ENST00000342988	NM_005359.5	404	-/CACTGA																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678719	52678719	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0080940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	13	194	0	ENST00000394830.3:c.899+1G>T		p.X300_splice	ENST00000394830	NM_018313.4	300																																																																																
RNF43	54894	MSKCC	GRCh37	17	56492753	56492754	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0080940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	27	443	0	ENST00000407977.2:c.185dup	p.Asn62LysfsTer13	p.N62Kfs*13	ENST00000407977		62	aat/aaAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0080946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	72	288	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528579	89528579	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	57	221	0	ENST00000336596.2:c.2879G>T	p.Gly960Val	p.G960V	ENST00000336596	NM_005233.5	960	gGg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0080946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	120	160	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220614	1220614	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	51	252	1	ENST00000326873.7:c.633del	p.Thr212ProfsTer75	p.T212Pfs*75	ENST00000326873	NM_000455.4	211	cGg/cg																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045873	26045873	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	39	408	0	ENST00000540144.1:c.235T>A	p.Phe79Ile	p.F79I	ENST00000540144	NM_003531.2	79	Ttc/Atc																																																																															
ATR	545	MSKCC	GRCh37	3	142215337	142215337	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	35	144	0	ENST00000350721.4:c.5764G>T	p.Glu1922Ter	p.E1922*	ENST00000350721	NM_001184.3	1922	Gaa/Taa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31380486	31380486	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0080946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	75	267	0	ENST00000328111.2:c.976G>T	p.Glu326Ter	p.E326*	ENST00000328111	NM_006892.3	326	Gag/Tag																																																																															
CTR9	9646	MSKCC	GRCh37	11	10783493	10783493	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0080946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	50	222	0	ENST00000361367.2:c.742-1G>T		p.X248_splice	ENST00000361367	NM_014633.3	248																																																																																
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0080948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	148	296	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44879871	44879871	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			51	36	238	0	ENST00000377967.4:c.460C>T	p.Gln154Ter	p.Q154*	ENST00000377967	NM_021140.2	154	Cag/Tag																																																																															
CENPA	1058	MSKCC	GRCh37	2	27009087	27009087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	103	233	0	ENST00000335756.4:c.23G>A	p.Arg8Gln	p.R8Q	ENST00000335756	NM_001809.3	8	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	53	181	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242470	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC	rs397517096		P-0080952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	85	223	0	ENST00000275493.2:c.2239_2240delinsCC	p.Leu747Pro	p.L747P	ENST00000275493	NM_005228.3	747	TTa/CCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0081016-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	201	424	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0081016-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	156	494	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																															
MTOR	2475	MSKCC	GRCh37	1	11199369	11199369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	41	340	0	ENST00000361445.4:c.5122G>A	p.Ala1708Thr	p.A1708T	ENST00000361445	NM_004958.3	1708	Gcc/Acc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166505	118166505	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs865949572		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	151	531	0	ENST00000369448.3:c.1015C>T	p.Arg339Cys	p.R339C	ENST00000369448	NM_017709.3	339	Cgt/Tgt																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429978	78429978	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	74	480	3	ENST00000370768.2:c.901del	p.Ile301TyrfsTer22	p.I301Yfs*22	ENST00000370768	NM_003902.3	301	Ata/ta																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	96	393	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	40	561	0	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18534755	18534755	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776582655		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	128	430	2	ENST00000266497.5:c.1813G>A	p.Val605Ile	p.V605I	ENST00000266497		605	Gta/Ata																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	292	682	7	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245394	46245394	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	122	614	0	ENST00000334344.6:c.3491del	p.Phe1164SerfsTer9	p.F1164Sfs*9	ENST00000334344	NM_152641.2	1163	aTt/at																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287469	46287469	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	34	442	0	ENST00000334344.6:c.5333del	p.Asn1778IlefsTer13	p.N1778Ifs*13	ENST00000334344	NM_152641.2	1776	ttA/tt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	100	542	1	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	120	472	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576204	88576204	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761822626		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	115	509	0	ENST00000360948.2:c.1469C>T	p.Thr490Met	p.T490M	ENST00000360948	NM_001012338.2	490	aCg/aTg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225935	2225935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	98	568	0	ENST00000326181.6:c.1727C>T	p.Thr576Ile	p.T576I	ENST00000326181	NM_032271.2	576	aCc/aTc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3808908	3808908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	125	483	1	ENST00000262367.5:c.3316C>A	p.Pro1106Thr	p.P1106T	ENST00000262367	NM_004380.2	1106	Cca/Aca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830100	72830100	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs549883293		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	131	603	0	ENST00000268489.5:c.6481C>T	p.Arg2161Trp	p.R2161W	ENST00000268489	NM_006885.3	2161	Cgg/Tgg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857047	9857047	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs568622613		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	122	530	0	ENST00000330684.3:c.4354C>T	p.Arg1452Cys	p.R1452C	ENST00000330684	NM_001134407.1	1452	Cgc/Tgc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857075	9857075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	111	482	0	ENST00000330684.3:c.4326del	p.Arg1443GlyfsTer3	p.R1443Gfs*3	ENST00000330684	NM_001134407.1	1442	ccC/cc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40459465	40459465	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750047248		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	113	531	0	ENST00000345506.4:c.1726G>A	p.Gly576Arg	p.G576R	ENST00000345506	NM_003152.3	576	Ggg/Agg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	300	673	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436028	56436028	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	169	675	1	ENST00000407977.2:c.1109del	p.Pro370HisfsTer49	p.P370Hfs*49	ENST00000407977		370	cCa/ca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437606	56437606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886926322		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	124	495	0	ENST00000407977.2:c.856C>T	p.Arg286Trp	p.R286W	ENST00000407977		286	Cgg/Tgg																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66511562	66511562	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1224297486		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	143	508	1	ENST00000358598.2:c.22G>A	p.Ala8Thr	p.A8T	ENST00000358598	NM_212471.2	8	Gcc/Acc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593429	48593429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	75	492	0	ENST00000342988.3:c.1180G>A	p.Glu394Lys	p.E394K	ENST00000342988	NM_005359.5	394	Gaa/Aaa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132437	11132437	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs281875227		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	68	629	0	ENST00000344626.4:c.2653C>T	p.Arg885Cys	p.R885C	ENST00000344626	NM_003072.3	885	Cgc/Tgc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375538	15375538	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	67	587	0	ENST00000263377.2:c.889C>A	p.Pro297Thr	p.P297T	ENST00000263377	NM_058243.2	297	Ccc/Acc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17951059	17951059	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	93	390	0	ENST00000458235.1:c.1234C>A	p.Leu412Ile	p.L412I	ENST00000458235	NM_000215.3	412	Ctc/Atc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226877	2226877	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs78539344		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	118	599	0	ENST00000398665.3:c.4357G>A	p.Gly1453Ser	p.G1453S	ENST00000398665	NM_032482.2	1453	Ggc/Agc																																																																															
GNA11	2767	MSKCC	GRCh37	19	3119273	3119273	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144829732		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	128	623	0	ENST00000078429.4:c.805G>A	p.Val269Ile	p.V269I	ENST00000078429	NM_002067.2	269	Gtc/Atc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223858	36223858	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	127	650	4	ENST00000222270.7:c.6413del	p.Pro2138ArgfsTer15	p.P2138Rfs*15	ENST00000222270	NM_014727.1	2136	ctC/ct																																																																															
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	107	479	0	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																															
INSR	3643	MSKCC	GRCh37	19	7267805	7267805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	125	510	0	ENST00000302850.5:c.203C>T	p.Thr68Met	p.T68M	ENST00000302850	NM_000208.2	68	aCg/aTg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	91	440	8	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661186	227661186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	137	583	0	ENST00000305123.5:c.2269del	p.Gln757SerfsTer186	p.Q757Sfs*186	ENST00000305123	NM_005544.2	757	Cag/ag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	84	557	5	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024795	31024797	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs1203207717		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	122	547	0	ENST00000375687.4:c.4285_4287del	p.Ser1429del	p.S1429del	ENST00000375687	NM_015338.5	1427	cCTTct/cct																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445208	29445209	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	162	556	0	ENST00000544604.2:c.1046_1047del	p.Val349GlyfsTer117	p.V349Gfs*117	ENST00000544604	NM_001206998.1	347	GTg/g																																																																															
NF2	4771	MSKCC	GRCh37	22	30070875	30070875	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776109136		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	107	460	0	ENST00000338641.4:c.1391C>T	p.Ala464Val	p.A464V	ENST00000338641	NM_000268.3	464	gCg/gTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	44	265	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517202		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	117	542	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185165687	185165687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	149	473	0	ENST00000265026.3:c.962C>T	p.Ala321Val	p.A321V	ENST00000265026	NM_004721.4	321	gCg/gTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286237	66286238	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	90	439	0	ENST00000273854.3:c.1448dup	p.Asn483LysfsTer21	p.N483Kfs*21	ENST00000273854	NM_004439.5	483	aac/aaAc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	101	594	3	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	189	441	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138198389	138198389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751123351		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	122	478	0	ENST00000237289.4:c.982G>A	p.Ala328Thr	p.A328T	ENST00000237289	NM_001270507.1	328	Gca/Aca																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163752	152163752	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757200716		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	102	469	0	ENST00000206249.3:c.473G>A	p.Arg158His	p.R158H	ENST00000206249	NM_000125.3	158	cGc/cAc																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43749743	43749743	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376388064		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	141	526	0	ENST00000523873.1:c.596C>T	p.Pro199Leu	p.P199L	ENST00000523873		199	cCg/cTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508424	106508424	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751449393		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	76	497	0	ENST00000359195.3:c.418C>T	p.Arg140Trp	p.R140W	ENST00000359195	NM_002649.2	140	Cgg/Tgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012386	152012386	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	87	495	2	ENST00000262189.6:c.427del	p.Ser143ValfsTer3	p.S143Vfs*3	ENST00000262189	NM_170606.2	143	Agt/gt																																																																															
HGF	3082	MSKCC	GRCh37	7	81392144	81392145	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	70	435	0	ENST00000222390.5:c.132dup	p.Ser45IlefsTer28	p.S45Ifs*28	ENST00000222390	NM_000601.4	44	-/A																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146944	38146945	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	48	435	2	ENST00000317025.8:c.3197dup	p.Asn1066LysfsTer14	p.N1066Kfs*14	ENST00000317025	NM_023034.1	1066	aac/aaAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	120	514	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	103	308	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202761	16202761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	145	528	0	ENST00000375759.3:c.469G>A	p.Gly157Arg	p.G157R	ENST00000375759	NM_015001.2	157	Gga/Aga																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2491363	2491363	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	110	541	0	ENST00000355716.4:c.406G>T	p.Ala136Ser	p.A136S	ENST00000355716	NM_003820.2	136	Gcc/Tcc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65310435	65310435	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	116	631	0	ENST00000342505.4:c.2251+2T>C		p.X751_splice	ENST00000342505	NM_002227.2	751																																																																																
SHOC2	8036	MSKCC	GRCh37	10	112724467	112724470	+	frameshift_variant	Frame_Shift_Del	DEL	ATCA	ATCA	-			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	113	572	0	ENST00000369452.4:c.356_359del	p.Ile119LysfsTer3	p.I119Kfs*3	ENST00000369452	NM_007373.3	117	tcATCA/tc																																																																															
CBL	867	MSKCC	GRCh37	11	119144654	119144654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	136	433	1	ENST00000264033.4:c.667G>A	p.Ala223Thr	p.A223T	ENST00000264033	NM_005188.3	223	Gct/Act																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022568	12022570	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs1287554272		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	127	634	0	ENST00000396373.4:c.676_678del	p.Glu226del	p.E226del	ENST00000396373	NM_001987.4	225	cAGGag/cag																																																																															
POLE	5426	MSKCC	GRCh37	12	133245049	133245049	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	127	631	0	ENST00000320574.5:c.2066A>G	p.Gln689Arg	p.Q689R	ENST00000320574	NM_006231.2	689	cAg/cGg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396487	396487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	147	627	0	ENST00000262320.3:c.539C>T	p.Ala180Val	p.A180V	ENST00000262320	NM_003502.3	180	gCc/gTc																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38793755	38793755	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	156	490	0	ENST00000348513.6:c.226T>C	p.Tyr76His	p.Y76H	ENST00000348513	NM_003079.4	76	Tac/Cac																																																																															
BRCA1	672	MSKCC	GRCh37	17	41276109	41276109	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	89	383	0	ENST00000357654.3:c.5A>G	p.Asp2Gly	p.D2G	ENST00000357654	NM_007294.3	2	gAt/gGt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56338925	56338925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	57	292	0	ENST00000348428.3:c.50C>T	p.Pro17Leu	p.P17L	ENST00000348428	NM_006785.3	17	cCc/cTc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1646363	1646363	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	122	486	0	ENST00000344749.5:c.136G>T	p.Gly46Ter	p.G46*	ENST00000344749	NM_001136139.2	46	Gga/Tga																																																																															
CIC	23152	MSKCC	GRCh37	19	42798094	42798094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	106	526	0	ENST00000575354.2:c.4048C>A	p.Leu1350Met	p.L1350M	ENST00000575354	NM_015125.3	1350	Ctg/Atg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912873	50912873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	109	444	1	ENST00000440232.2:c.2104G>A	p.Gly702Ser	p.G702S	ENST00000440232	NM_002691.3	702	Ggc/Agc																																																																															
CASP8	841	MSKCC	GRCh37	2	202149773	202149773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	174	579	0	ENST00000358485.4:c.1214C>A	p.Pro405His	p.P405H	ENST00000358485	NM_001080125.1	405	cCt/cAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212652810	212652810	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	107	479	0	ENST00000342788.4:c.496A>G	p.Ile166Val	p.I166V	ENST00000342788	NM_005235.2	166	Att/Gtt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505579	25505579	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	130	390	0	ENST00000264709.3:c.179T>C	p.Val60Ala	p.V60A	ENST00000264709	NM_175629.2	60	gTg/gCg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026681	48026681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	162	605	1	ENST00000234420.5:c.1559G>A	p.Gly520Asp	p.G520D	ENST00000234420	NM_000179.2	520	gGt/gAt																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30253774	30253774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	111	494	0	ENST00000307677.4:c.680G>A	p.Gly227Asp	p.G227D	ENST00000307677	NM_138578.1	227	gGc/gAc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44515553	44515553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	113	476	0	ENST00000291552.4:c.343G>A	p.Val115Ile	p.V115I	ENST00000291552	NM_006758.2	115	Gtc/Atc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279855	29279856	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	40	107	0	ENST00000544604.2:c.101_102insT	p.Pro35AlafsTer74	p.P35Afs*74	ENST00000544604	NM_001206998.1	34	ccg/ccTg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430758	181430758	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	92	598	0	ENST00000325404.1:c.610del	p.Ala204ProfsTer7	p.A204Pfs*7	ENST00000325404	NM_003106.3	204	Gcc/cc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37048555	37048555	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	116	404	0	ENST00000231790.2:c.453+1G>A		p.X151_splice	ENST00000231790	NM_000249.3	151																																																																																
MLH1	4292	MSKCC	GRCh37	3	37081770	37081770	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	127	428	0	ENST00000231790.2:c.1652A>T	p.Asn551Ile	p.N551I	ENST00000231790	NM_000249.3	551	aAc/aTc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37091976	37091976	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs587778978		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	122	531	0	ENST00000231790.2:c.2104-1G>T		p.X702_splice	ENST00000231790	NM_000249.3	702																																																																																
ATXN7	6314	MSKCC	GRCh37	3	63898348	63898348	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1318123596		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	34	196	0	ENST00000295900.6:c.74C>T	p.Ala25Val	p.A25V	ENST00000295900	NM_000333.3	25	gCc/gTc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63968041	63968041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	132	499	0	ENST00000295900.6:c.932G>A	p.Gly311Glu	p.G311E	ENST00000295900	NM_000333.3	311	gGg/gAg																																																																															
KDR	3791	MSKCC	GRCh37	4	55987311	55987311	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	77	301	0	ENST00000263923.4:c.114del	p.Asp39ThrfsTer38	p.D39Tfs*38	ENST00000263923	NM_002253.2	38	aaA/aa																																																																															
APC	324	MSKCC	GRCh37	5	112170840	112170840	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	117	463	0	ENST00000257430.4:c.1936A>G	p.Ile646Val	p.I646V	ENST00000257430	NM_000038.5	646	Ata/Gta																																																																															
APC	324	MSKCC	GRCh37	5	112179675	112179675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	146	548	0	ENST00000257430.4:c.8384C>T	p.Ala2795Val	p.A2795V	ENST00000257430	NM_000038.5	2795	gCa/gTa																																																																															
TERT	7015	MSKCC	GRCh37	5	1296000	1296001	+	upstream_gene_variant	5'Flank	INS	-	-	G			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	142	654	0				ENST00000310581	NM_198253.2																																																																																	
PDGFRB	5159	MSKCC	GRCh37	5	149495369	149495369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	114	430	0	ENST00000261799.4:c.3278G>T	p.Gly1093Val	p.G1093V	ENST00000261799	NM_002609.3	1093	gGg/gTg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675605	86675605	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	63	386	0	ENST00000274376.6:c.2541C>A	p.His847Gln	p.H847Q	ENST00000274376	NM_002890.2	847	caC/caA																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099717	157099718	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	25	145	0	ENST00000346085.5:c.659dup	p.Gly221ArgfsTer11	p.G221Rfs*11	ENST00000346085	NM_020732.3	218	-/G																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527718	157527718	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	136	517	0	ENST00000346085.5:c.5443G>T	p.Gly1815Cys	p.G1815C	ENST00000346085	NM_020732.3	1815	Ggc/Tgc																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969912	161969912	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1460011098		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	94	382	0	ENST00000366898.1:c.1057G>A	p.Glu353Lys	p.E353K	ENST00000366898	NM_004562.2	353	Gaa/Aaa																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910697	29910697	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	71	597	0	ENST00000376809.5:c.237G>T	p.Glu79Asp	p.E79D	ENST00000376809	NM_002116.7	79	gaG/gaT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956577	93956577	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	104	482	0	ENST00000369303.4:c.2659G>T	p.Val887Phe	p.V887F	ENST00000369303	NM_004440.3	887	Gtt/Ttt																																																																															
SMO	6608	MSKCC	GRCh37	7	128848647	128848647	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1279802916		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	100	442	0	ENST00000249373.3:c.1312A>G	p.Ser438Gly	p.S438G	ENST00000249373	NM_005631.4	438	Agt/Ggt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879295	151879295	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs778626630		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	178	604	0	ENST00000262189.6:c.5650C>A	p.Pro1884Thr	p.P1884T	ENST00000262189	NM_170606.2	1884	Cct/Act																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271154	38271154	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768736835		P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	72	326	0	ENST00000425967.3:c.2554C>T	p.Arg852Cys	p.R852C	ENST00000425967	NM_001174067.1	852	Cgc/Tgc																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139563014	139563014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	126	523	0	ENST00000308874.7:c.86G>T	p.Arg29Met	p.R29M	ENST00000308874		29	aGg/aTg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87338523	87338523	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	79	529	0	ENST00000277120.3:c.619A>T	p.Thr207Ser	p.T207S	ENST00000277120		207	Act/Tct																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949989	44949989	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			72	81	252	0	ENST00000377967.4:c.3758T>C	p.Val1253Ala	p.V1253A	ENST00000377967	NM_021140.2	1253	gTg/gCg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160630	56160630	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0081071-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	217	503	0	ENST00000399503.3:c.904G>T	p.Glu302Ter	p.E302*	ENST00000399503	NM_005921.1	302	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579349	7579349	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0081089-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	86	383	0	ENST00000269305.4:c.338T>G	p.Phe113Cys	p.F113C	ENST00000269305	NM_001126112.2	113	tTc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0081089-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	124	335	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856020	111856020	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1263604332		P-0081089-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	158	354	0	ENST00000341259.2:c.71G>A	p.Arg24Gln	p.R24Q	ENST00000341259	NM_005475.2	24	cGg/cAg																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675109	40675109	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081089-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	47	330	0	ENST00000249776.8:c.73C>G	p.His25Asp	p.H25D	ENST00000249776	NM_033286.3	25	Cac/Gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0081090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	274	427	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112174784	112174784	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0081090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			742	135	512	0	ENST00000257430.4:c.3493A>T	p.Lys1165Ter	p.K1165*	ENST00000257430	NM_000038.5	1165	Aaa/Taa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827927	40827927	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs536150112		P-0081090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1089	127	452	0	ENST00000373198.4:c.2501G>A	p.Arg834His	p.R834H	ENST00000373198	NM_133170.3	834	cGc/cAc																																																																															
AR	367	MSKCC	GRCh37	X	66765159	66765206	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	-	rs1416035178		P-0081090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	170	144	0	ENST00000374690.3:c.192_239del	p.Gln65_Gln80del	p.Q65_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3842006	3842006	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	132	414	0	ENST00000262367.5:c.1306G>T	p.Ala436Ser	p.A436S	ENST00000262367	NM_004380.2	436	Gcc/Tcc																																																																															
MDM4	4194	MSKCC	GRCh37	1	204506594	204506594	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	126	391	0	ENST00000367182.3:c.380G>T	p.Ser127Ile	p.S127I	ENST00000367182	NM_001278516.1	127	aGt/aTt																																																																															
CASP8	841	MSKCC	GRCh37	2	202131500	202131500	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs767913080		P-0081090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	164	459	0	ENST00000358485.4:c.468A>C	p.Gln156His	p.Q156H	ENST00000358485	NM_001080125.1	156	caA/caC																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115982	8115983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0081094-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	216	497	0	ENST00000346208.3:c.1330dup	p.Ter444LeufsTer63	p.*444Lfs*63	ENST00000346208		443	ggt/ggTt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627854	37627854	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0081094-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	415	565	0	ENST00000447079.4:c.1769C>G	p.Ser590Ter	p.S590*	ENST00000447079	NM_015083.1	590	tCa/tGa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641505	18641505	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0081094-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	225	476	0	ENST00000266497.5:c.2504T>C	p.Ile835Thr	p.I835T	ENST00000266497		835	aTc/aCc																																																																															
NF1	4763	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs778405030		P-0081094-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	11	529	0	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0081097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			728	101	557	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134977949	134977949	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56186270		P-0081097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	53	415	0	ENST00000398015.3:c.2942C>T	p.Thr981Met	p.T981M	ENST00000398015	NM_004441.4	981	aCg/aTg																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs483352822		P-0081097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			804	55	420	0	ENST00000368323.3:c.270G>A	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atA																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402595	20402595	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			916	60	426	0	ENST00000346618.3:c.132C>G	p.Phe44Leu	p.F44L	ENST00000346618	NM_001949.4	44	ttC/ttG																																																																															
TP63	8626	MSKCC	GRCh37	3	189455576	189455576	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754361670		P-0081097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	46	468	0	ENST00000264731.3:c.110G>A	p.Arg37Gln	p.R37Q	ENST00000264731	NM_003722.4	37	cGa/cAa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467590	66467590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	60	438	0	ENST00000273854.3:c.679C>A	p.Arg227Ser	p.R227S	ENST00000273854	NM_004439.5	227	Cgt/Agt																																																																															
POT1	25913	MSKCC	GRCh37	7	124510987	124510987	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs947005337		P-0081097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	19	344	0	ENST00000357628.3:c.233T>C	p.Ile78Thr	p.I78T	ENST00000357628	NM_015450.2	78	aTt/aCt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53247530	53247530	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0081097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	75	495	0	ENST00000375401.3:c.279G>A	p.Trp93Ter	p.W93*	ENST00000375401	NM_004187.3	93	tgG/tgA																																																																															
PREX2	80243	MSKCC	GRCh37	8	69136850	69136850	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	92	339	0	ENST00000288368.4:c.4764G>T	p.Gln1588His	p.Q1588H	ENST00000288368	NM_024870.2	1588	caG/caT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0081097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	36	315	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396938	396938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			802	120	522	0	ENST00000262320.3:c.88G>A	p.Gly30Arg	p.G30R	ENST00000262320	NM_003502.3	30	Gga/Aga																																																																															
POT1	25913	MSKCC	GRCh37	7	124503618	124503618	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	54	397	0	ENST00000357628.3:c.332G>T	p.Gly111Val	p.G111V	ENST00000357628	NM_015450.2	111	gGa/gTa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39250197	39250197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	22	425	0	ENST00000402219.2:c.1372G>A	p.Glu458Lys	p.E458K	ENST00000402219	NM_005633.3	458	Gag/Aag																																																																															
BCL2	596	MSKCC	GRCh37	18	60985479	60985479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			845	53	559	0	ENST00000333681.4:c.421G>T	p.Gly141Trp	p.G141W	ENST00000333681		141	Ggg/Tgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517703	187517703	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	42	366	0	ENST00000441802.2:c.12991G>T	p.Asp4331Tyr	p.D4331Y	ENST00000441802	NM_005245.3	4331	Gac/Tac																																																																															
DICER1	23405	MSKCC	GRCh37	14	95597977	95597977	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0081097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	20	328	0	ENST00000343455.3:c.308-1G>A		p.X103_splice	ENST00000343455	NM_177438.2	103																																																																																
DNMT1	1786	MSKCC	GRCh37	19	10305509	10305509	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0081097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			750	65	437	0	ENST00000340748.4:c.67G>T	p.Asp23Tyr	p.D23Y	ENST00000340748		23	Gat/Tat																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864911	117864911	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	31	320	0	ENST00000297338.2:c.1198G>C	p.Asp400His	p.D400H	ENST00000297338	NM_006265.2	400	Gac/Cac																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61328061	61328061	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0081097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			56	12	54	0	ENST00000283752.5:c.195C>A	p.Asn65Lys	p.N65K	ENST00000283752	NM_006919.2	65	aaC/aaA																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413259	139413259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0081097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	37	380	0	ENST00000277541.6:c.883G>A	p.Asp295Asn	p.D295N	ENST00000277541	NM_017617.3	295	Gat/Aat																																																																															
ATR	545	MSKCC	GRCh37	3	142224025	142224025	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0081097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	72	435	0	ENST00000350721.4:c.5152G>C	p.Ala1718Pro	p.A1718P	ENST00000350721	NM_001184.3	1718	Gcc/Ccc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579415	7579415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070136-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			109	299	376	0	ENST00000269305.4:c.272G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tGg/tAg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671702	30671702	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0070136-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	131	309	0	ENST00000376406.3:c.5258C>G	p.Ser1753Ter	p.S1753*	ENST00000376406	NM_014641.2	1753	tCa/tGa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139764	55139764	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200309940		P-0070136-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			211	167	297	0	ENST00000257290.5:c.1425G>T	p.Glu475Asp	p.E475D	ENST00000257290	NM_006206.4	475	gaG/gaT																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23539063	23539063	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749467152		P-0070136-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			366	137	269	0	ENST00000380871.4:c.376C>T	p.Arg126Cys	p.R126C	ENST00000380871	NM_006167.3	126	Cgc/Tgc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016634	12016634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070136-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			49	190	265	0	ENST00000353533.5:c.770C>T	p.Ser257Phe	p.S257F	ENST00000353533	NM_003010.3	257	tCt/tTt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056743	180056743	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070136-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			249	54	244	0	ENST00000261937.6:c.769G>C	p.Glu257Gln	p.E257Q	ENST00000261937	NM_182925.4	257	Gag/Cag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431759	49431759	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1359665754		P-0070136-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			591	113	288	0	ENST00000301067.7:c.9380G>A	p.Arg3127His	p.R3127H	ENST00000301067	NM_003482.3	3127	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070136-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			153	285	237	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672560	30672560	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070136-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			499	151	373	0	ENST00000376406.3:c.4400C>G	p.Pro1467Arg	p.P1467R	ENST00000376406	NM_014641.2	1467	cCt/cGt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343078	118343078	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070136-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			212	170	264	0	ENST00000534358.1:c.1204C>T	p.Gln402Ter	p.Q402*	ENST00000534358	NM_005933.3	402	Cag/Tag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134885829	134885829	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070136-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			216	96	274	0	ENST00000398015.3:c.1740G>C	p.Gln580His	p.Q580H	ENST00000398015	NM_004441.4	580	caG/caC																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448583	89448583	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070136-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			245	208	309	0	ENST00000336596.2:c.1547G>T	p.Gly516Val	p.G516V	ENST00000336596	NM_005233.5	516	gGa/gTa																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127933390	127933390	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070136-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			176	235	233	0	ENST00000373547.4:c.145A>G	p.Thr49Ala	p.T49A	ENST00000373547	NM_002721.4	49	Aca/Gca																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94219115	94219115	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070136-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			171	149	249	0	ENST00000323929.3:c.289C>T	p.Gln97Ter	p.Q97*	ENST00000323929	NM_005591.3	97	Cag/Tag																																																																															
AGO2	27161	MSKCC	GRCh37	8	141566118	141566118	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0070136-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			551	200	264	0	ENST00000220592.5:c.1147-1G>T		p.X383_splice	ENST00000220592	NM_012154.3	383																																																																																
YAP1	10413	MSKCC	GRCh37	11	101981602	101981602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070136-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	97	270	0	ENST00000282441.5:c.23C>T	p.Pro8Leu	p.P8L	ENST00000282441	NM_001130145.2	8	cCg/cTg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671860	30671860	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070136-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			403	122	290	0	ENST00000376406.3:c.5100C>G	p.Phe1700Leu	p.F1700L	ENST00000376406	NM_014641.2	1700	ttC/ttG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380279	25380279	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs727503108		P-0070136-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			492	164	239	0	ENST00000256078.4:c.179G>T	p.Gly60Val	p.G60V	ENST00000256078	NM_033360.2	60	gGt/gTt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982092	93982092	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070136-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			210	84	245	0	ENST00000369303.4:c.1373G>T	p.Ser458Ile	p.S458I	ENST00000369303	NM_004440.3	458	aGt/aTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974713	21974713	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077299-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			446	87	409	0	ENST00000304494.5:c.114del	p.Asn39ThrfsTer14	p.N39Tfs*14	ENST00000304494	NM_000077.4	38	ccC/cc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225368387	225368388	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0077299-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			348	55	287	0	ENST00000264414.4:c.1358dup	p.Asn453LysfsTer5	p.N453Kfs*5	ENST00000264414	NM_003590.4	453	aac/aaAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579339	7579340	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAATGCAAGAAGCCCAGACG			P-0077299-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			458	72	438	0	ENST00000269305.4:c.328_347dup	p.Gly117ValfsTer13	p.G117Vfs*13	ENST00000269305	NM_001126112.2	116	tct/tcCGTCTGGGCTTCTTGCATTCt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661348	227661348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077299-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			429	96	448	0	ENST00000305123.5:c.2107G>A	p.Val703Ile	p.V703I	ENST00000305123	NM_005544.2	703	Gta/Ata																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974773	15974773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077299-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			550	98	399	0	ENST00000268712.3:c.4102C>T	p.Pro1368Ser	p.P1368S	ENST00000268712	NM_006311.3	1368	Cca/Tca																																																																															
ATM	472	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs772821016		P-0078865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	9	278	0	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0079317-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			266	18	482	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934578		P-0079317-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			443	44	695	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426812	121426812	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377110124		P-0079317-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			402	24	560	0	ENST00000257555.6:c.503G>A	p.Arg168His	p.R168H	ENST00000257555		168	cGc/cAc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763304	59763304	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0079317-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	20	562	0	ENST00000259008.2:c.2798A>C	p.Asn933Thr	p.N933T	ENST00000259008	NM_032043.2	933	aAt/aCt																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589840	69589840	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079317-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	34	920	0	ENST00000168712.1:c.13G>T	p.Gly5Trp	p.G5W	ENST00000168712	NM_002007.2	5	Ggg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0079905-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			186	174	302	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602613	10602613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079905-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			263	374	638	0	ENST00000171111.5:c.965C>T	p.Pro322Leu	p.P322L	ENST00000171111	NM_203500.1	322	cCc/cTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220394	1220395	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0079905-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			209	337	577	1	ENST00000326873.7:c.487_488delinsTT	p.Gly163Phe	p.G163F	ENST00000326873	NM_000455.4	163	GGc/TTc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935499	13935499	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767552829		P-0079905-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			670	133	448	0	ENST00000405192.2:c.1357G>A	p.Val453Met	p.V453M	ENST00000405192	NM_001163147.1	453	Gtg/Atg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11293543	11293543	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0079905-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	128	386	0	ENST00000361445.4:c.2333C>T	p.Ala778Val	p.A778V	ENST00000361445	NM_004958.3	778	gCa/gTa																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400993	72400993	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0079905-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			240	73	387	0	ENST00000357731.5:c.178T>G	p.Cys60Gly	p.C60G	ENST00000357731	NM_173808.2	60	Tgt/Ggt																																																																															
MGA	23269	MSKCC	GRCh37	15	42041012	42041012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079905-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			613	198	547	0	ENST00000219905.7:c.5390G>A	p.Gly1797Glu	p.G1797E	ENST00000219905	NM_001164273.1	1797	gGa/gAa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515306	31515306	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079905-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			326	327	424	0	ENST00000344624.3:c.1079del	p.Lys360ArgfsTer118	p.K360Rfs*118	ENST00000344624		360	aAg/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0080190-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			283	181	326	0	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183298	56183298	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080190-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			305	168	220	0	ENST00000399503.3:c.4208G>C	p.Gly1403Ala	p.G1403A	ENST00000399503	NM_005921.1	1403	gGa/gCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080190-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			57	89	151	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0080323-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			408	25	565	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0080323-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			322	745	427	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0080323-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			216	187	493	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080323-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	168	513	0	ENST00000361445.4:c.5930C>T	p.Thr1977Ile	p.T1977I	ENST00000361445	NM_004958.3	1977	aCa/aTa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771776	135771776	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080323-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	204	576	0	ENST00000298552.3:c.3341C>G	p.Ser1114Cys	p.S1114C	ENST00000298552	NM_001162426.1	1114	tCt/tGt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59886037	59886037	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080323-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			772	73	483	0	ENST00000259008.2:c.709C>G	p.His237Asp	p.H237D	ENST00000259008	NM_032043.2	237	Cat/Gat																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670622	30670622	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080323-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	128	483	0	ENST00000376406.3:c.5898T>A	p.Asp1966Glu	p.D1966E	ENST00000376406	NM_014641.2	1966	gaT/gaA																																																																															
APC	324	MSKCC	GRCh37	5	112175466	112175466	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs786204170		P-0080416-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			83	172	442	0	ENST00000257430.4:c.4175C>A	p.Ser1392Ter	p.S1392*	ENST00000257430	NM_000038.5	1392	tCa/tAa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943631	9943631	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770071260		P-0080416-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	186	397	1	ENST00000330684.3:c.1310G>A	p.Arg437Gln	p.R437Q	ENST00000330684	NM_001134407.1	437	cGg/cAg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967156	25967156	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201808592		P-0080416-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	88	441	1	ENST00000435504.4:c.2050G>A	p.Ala684Thr	p.A684T	ENST00000435504		684	Gcc/Acc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980811	40980811	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080416-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			932	126	434	0	ENST00000373198.4:c.1675G>C	p.Gly559Arg	p.G559R	ENST00000373198	NM_133170.3	559	Ggg/Cgg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640789	3640789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080416-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	92	458	0	ENST00000294008.3:c.2850G>T	p.Glu950Asp	p.E950D	ENST00000294008	NM_032444.2	950	gaG/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080416-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			91	222	457	0	ENST00000269305.4:c.643del	p.Ser215ValfsTer32	p.S215Vfs*32	ENST00000269305	NM_001126112.2	215	Agt/gt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9770626	9770626	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761349863		P-0080418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	37	419	1	ENST00000377346.4:c.113G>A	p.Arg38His	p.R38H	ENST00000377346	NM_005026.3	38	cGc/cAc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371633	55371633	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs931390946		P-0080418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	24	384	0	ENST00000297316.4:c.323C>T	p.Ala108Val	p.A108V	ENST00000297316	NM_022454.3	108	gCg/gTg																																																																															
KIT	3815	MSKCC	GRCh37	4	55589771	55589771	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	28	315	0	ENST00000288135.5:c.1253A>G	p.Tyr418Cys	p.Y418C	ENST00000288135	NM_000222.2	418	tAc/tGc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28896990	28896990	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753953796		P-0080418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	37	379	0	ENST00000282397.4:c.2890G>A	p.Glu964Lys	p.E964K	ENST00000282397	NM_002019.4	964	Gaa/Aaa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219692	36219692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	33	477	1	ENST00000222270.7:c.4589C>T	p.Ala1530Val	p.A1530V	ENST00000222270	NM_014727.1	1530	gCg/gTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500796	8500796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	29	419	0	ENST00000356435.5:c.2086G>A	p.Gly696Ser	p.G696S	ENST00000356435		696	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0080418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	38	305	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133252328	133252328	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	52	386	0	ENST00000320574.5:c.1099T>C	p.Phe367Leu	p.F367L	ENST00000320574	NM_006231.2	367	Ttt/Ctt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524930	187524930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	62	423	1	ENST00000441802.2:c.10750C>T	p.Pro3584Ser	p.P3584S	ENST00000441802	NM_005245.3	3584	Cct/Tct																																																																															
NF1	4763	MSKCC	GRCh37	17	29653094	29653095	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0080418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	78	499	0	ENST00000358273.4:c.5092_5093del	p.Thr1698TrpfsTer5	p.T1698Wfs*5	ENST00000358273	NM_001042492.2	1698	ACt/t																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31437403	31437403	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0080418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	29	376	0	ENST00000344624.3:c.2885T>A	p.Ile962Asn	p.I962N	ENST00000344624		962	aTt/aAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47205374	47205374	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	30	412	0	ENST00000409792.3:c.41A>C	p.Asp14Ala	p.D14A	ENST00000409792	NM_014159.6	14	gAt/gCt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508916	106508916	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	60	525	0	ENST00000359195.3:c.910C>A	p.His304Asn	p.H304N	ENST00000359195	NM_002649.2	304	Cac/Aac																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0080419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	37	312	1	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0080419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	26	315	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99180038	99180038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	28	386	0	ENST00000074304.5:c.1981G>A	p.Ala661Thr	p.A661T	ENST00000074304	NM_001134224.1	661	Gcg/Acg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0080436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	79	422	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	217	567	0	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579472	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	148	803	2	ENST00000269305.4:c.215_216delinsT	p.Pro72LeufsTer51	p.P72Lfs*51	ENST00000269305	NM_001126112.2	72	cCC/cT																																																																															
HGF	3082	MSKCC	GRCh37	7	81386569	81386569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	60	360	0	ENST00000222390.5:c.418G>A	p.Val140Ile	p.V140I	ENST00000222390	NM_000601.4	140	Gta/Ata																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30108079	30108079	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	19	248	0	ENST00000331968.5:c.728G>C	p.Arg243Pro	p.R243P	ENST00000331968	NM_002742.2	243	cGa/cCa																																																																															
NF1	4763	MSKCC	GRCh37	17	29422388	29422388	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	37	350	0	ENST00000358273.4:c.60+1G>C		p.X20_splice	ENST00000358273	NM_001042492.2	20																																																																																
GLI1	2735	MSKCC	GRCh37	12	57860046	57860046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	127	516	0	ENST00000228682.2:c.786C>A	p.His262Gln	p.H262Q	ENST00000228682	NM_005269.2	262	caC/caA																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046367	180046367	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	24	521	0	ENST00000261937.6:c.2648-1G>C		p.X883_splice	ENST00000261937	NM_182925.4	883																																																																																
SMO	6608	MSKCC	GRCh37	7	128845471	128845471	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	38	501	0	ENST00000249373.3:c.768G>C	p.Trp256Cys	p.W256C	ENST00000249373	NM_005631.4	256	tgG/tgC																																																																															
AKT3	10000	MSKCC	GRCh37	1	243708810	243708810	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	74	336	0	ENST00000263826.5:c.1251+2T>A		p.X417_splice	ENST00000263826	NM_005465.4	417																																																																																
TSHR	7253	MSKCC	GRCh37	14	81606100	81606100	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	69	577	0	ENST00000298171.2:c.770C>A	p.Thr257Asn	p.T257N	ENST00000298171	NM_000369.2	257	aCc/aAc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88428953	88428953	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	35	302	0	ENST00000360948.2:c.2147C>G	p.Ser716Cys	p.S716C	ENST00000360948	NM_001012338.2	716	tCt/tGt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096054	11096054	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	51	570	0	ENST00000344626.4:c.330del	p.Ser111AlafsTer192	p.S111Afs*192	ENST00000344626	NM_003072.3	110	Ccc/cc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423623	88423623	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	96	523	0	ENST00000360948.2:c.2212C>A	p.Pro738Thr	p.P738T	ENST00000360948	NM_001012338.2	738	Cct/Act																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21346020	21346020	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	130	615	0	ENST00000215739.8:c.897del	p.Phe299LeufsTer52	p.F299Lfs*52	ENST00000215739	NM_006767.3	299	Ttt/tt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980584	70980584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	77	637	0	ENST00000276594.2:c.793C>T	p.His265Tyr	p.H265Y	ENST00000276594	NM_024504.3	265	Cat/Tat																																																																															
SDHA	6389	MSKCC	GRCh37	5	225651	225651	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	32	527	0	ENST00000264932.6:c.430G>C	p.Glu144Gln	p.E144Q	ENST00000264932	NM_004168.2	144	Gag/Cag																																																																															
MAD2L2	10459	MSKCC	GRCh37	1	11736193	11736193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	47	438	0	ENST00000235310.3:c.337G>A	p.Asp113Asn	p.D113N	ENST00000235310		113	Gac/Aac																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87322787	87322787	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	40	347	0	ENST00000277120.3:c.388T>A	p.Leu130Met	p.L130M	ENST00000277120		130	Ttg/Atg																																																																															
CD276	80381	MSKCC	GRCh37	15	73996053	73996053	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	76	645	0	ENST00000318443.5:c.787G>T	p.Asp263Tyr	p.D263Y	ENST00000318443	NM_001024736.1	263	Gat/Tat																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81979830	81979830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	61	502	0	ENST00000359376.3:c.3532G>T	p.Ala1178Ser	p.A1178S	ENST00000359376	NM_002661.3	1178	Gct/Tct																																																																															
CTR9	9646	MSKCC	GRCh37	11	10787999	10787999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	62	418	0	ENST00000361367.2:c.1648G>A	p.Ala550Thr	p.A550T	ENST00000361367	NM_014633.3	550	Gct/Act																																																																															
JUN	3725	MSKCC	GRCh37	1	59248126	59248126	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	72	699	0	ENST00000371222.2:c.617A>T	p.Gln206Leu	p.Q206L	ENST00000371222	NM_002228.3	206	cAg/cTg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259354	36259354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	64	551	0	ENST00000300305.3:c.137C>T	p.Ala46Val	p.A46V	ENST00000300305		46	gCg/gTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53224499	53224499	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	83	270	0	ENST00000375401.3:c.3214G>T	p.Glu1072Ter	p.E1072*	ENST00000375401	NM_004187.3	1072	Gag/Tag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244165	46244165	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	110	575	0	ENST00000334344.6:c.2259del	p.Val754LeufsTer4	p.V754Lfs*4	ENST00000334344	NM_152641.2	753	ccT/cc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892300	9892300	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0080441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	49	513	0	ENST00000330684.3:c.2190C>A	p.Tyr730Ter	p.Y730*	ENST00000330684	NM_001134407.1	730	taC/taA																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0080596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	45	455	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0080596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	33	374	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0080596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	17	291	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575099	48575099	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	27	361	0	ENST00000342988.3:c.293T>C	p.Leu98Pro	p.L98P	ENST00000342988	NM_005359.5	98	cTc/cCc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870844	12870845	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0080596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	33	414	0	ENST00000228872.4:c.71_72delinsT	p.Pro24LeufsTer18	p.P24Lfs*18	ENST00000228872	NM_004064.3	24	cCC/cT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0080644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	79	284	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
RB1	5925	MSKCC	GRCh37	13	48916768	48916768	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0080644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	45	193	0	ENST00000267163.4:c.298G>T	p.Gly100Ter	p.G100*	ENST00000267163	NM_000321.2	100	Gga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	63	178	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106255	27106255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0080644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	31	327	0	ENST00000324856.7:c.5866G>T	p.Glu1956Ter	p.E1956*	ENST00000324856	NM_006015.4	1956	Gag/Tag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412414	63412415	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0080644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	48	160	0	ENST00000330258.3:c.752dup	p.Lys252GlufsTer5	p.K252Efs*5	ENST00000330258	NM_152424.3	251	gag/gaAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080679-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			124	269	419	2	ENST00000269305.4:c.814G>C	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ctg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5073697	5073697	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs1370719342		P-0080679-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			474	177	334	0	ENST00000381652.3:c.1777-1G>T		p.X593_splice	ENST00000381652	NM_004972.3	593																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8484300	8484300	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080679-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			568	210	424	0	ENST00000356435.5:c.3232G>T	p.Glu1078Ter	p.E1078*	ENST00000356435		1078	Gag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256987	16256987	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080679-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			279	393	448	1	ENST00000375759.3:c.4252C>T	p.Arg1418Ter	p.R1418*	ENST00000375759	NM_015001.2	1418	Cga/Tga																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349677	15349677	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080679-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			480	242	471	4	ENST00000263377.2:c.3897G>C	p.Gln1299His	p.Q1299H	ENST00000263377	NM_058243.2	1299	caG/caC																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2202747	2202747	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080679-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	136	435	2	ENST00000398665.3:c.756G>C	p.Gln252His	p.Q252H	ENST00000398665	NM_032482.2	252	caG/caC																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197011	123197011	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080679-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			143	11	151	0	ENST00000218089.9:c.1777C>A	p.Gln593Lys	p.Q593K	ENST00000218089	NM_001042749.1	593	Cag/Aag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53241034	53241034	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080679-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			54	114	233	2	ENST00000375401.3:c.1177A>T	p.Thr393Ser	p.T393S	ENST00000375401	NM_004187.3	393	Act/Tct																																																																															
ROS1	6098	MSKCC	GRCh37	6	117679054	117679054	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080679-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			190	75	386	0	ENST00000368508.3:c.3767T>A	p.Leu1256His	p.L1256H	ENST00000368508	NM_002944.2	1256	cTt/cAt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89865577	89865577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080679-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			491	73	480	0	ENST00000389301.3:c.890G>A	p.Cys297Tyr	p.C297Y	ENST00000389301	NM_000135.2	297	tGc/tAc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748034	72748034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080679-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			515	30	513	0	ENST00000357731.5:c.144G>A	p.Met48Ile	p.M48I	ENST00000357731	NM_173808.2	48	atG/atA																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31025097	31025097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080679-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			609	56	422	0	ENST00000375687.4:c.4582A>G	p.Ile1528Val	p.I1528V	ENST00000375687	NM_015338.5	1528	Att/Gtt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610310	81610317	+	frameshift_variant	Frame_Shift_Del	DEL	CATGGCCC	CATGGCCC	-			P-0080679-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	123	456	0	ENST00000298171.2:c.1910_1917del	p.Met637AsnfsTer18	p.M637Nfs*18	ENST00000298171	NM_000369.2	636	tgCATGGCCCca/tgca																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637250	176637250	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0080679-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			594	181	487	0	ENST00000439151.2:c.1850C>G	p.Ser617Ter	p.S617*	ENST00000439151	NM_022455.4	617	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0080689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	142	292	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918596	44918597	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0080689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	127	304	0	ENST00000377967.4:c.1083_1084del	p.Tyr362Ter	p.Y362*	ENST00000377967	NM_021140.2	360	aCT/a																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913385		P-0080689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	122	393	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	146	225	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593495	48593496	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0080689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	109	307	0	ENST00000342988.3:c.1246_1247insT	p.Arg416MetfsTer13	p.R416Mfs*13	ENST00000342988	NM_005359.5	416	aga/aTga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257894	16257894	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	77	434	0	ENST00000375759.3:c.5159A>G	p.Glu1720Gly	p.E1720G	ENST00000375759	NM_015001.2	1720	gAg/gGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0080791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			416	177	318	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577576	7577576	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			312	126	339	0	ENST00000269305.4:c.705del	p.Tyr236ThrfsTer11	p.Y236Tfs*11	ENST00000269305	NM_001126112.2	235	aaC/aa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879411	151879411	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			659	41	463	0	ENST00000262189.6:c.5534A>G	p.Asp1845Gly	p.D1845G	ENST00000262189	NM_170606.2	1845	gAt/gGt																																																																															
RB1	5925	MSKCC	GRCh37	13	48947605	48947606	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0080791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			112	36	225	0	ENST00000267163.4:c.1196dup	p.Asn399LysfsTer7	p.N399Kfs*7	ENST00000267163	NM_000321.2	398	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786204041		P-0080833-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	41	501	0	ENST00000269305.4:c.589G>T	p.Val197Leu	p.V197L	ENST00000269305	NM_001126112.2	197	Gtg/Ttg																																																																															
ATM	472	MSKCC	GRCh37	11	108186838	108186838	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0080833-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	22	361	0	ENST00000278616.4:c.6196C>T	p.Gln2066Ter	p.Q2066*	ENST00000278616	NM_000051.3	2066	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0080833-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	15	253	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597459	10597459	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080833-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	26	317	0	ENST00000171111.5:c.1744G>T	p.Glu582Ter	p.E582*	ENST00000171111	NM_203500.1	582	Gag/Tag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156639	55156639	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080833-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	19	393	0	ENST00000257290.5:c.3040G>T	p.Ala1014Ser	p.A1014S	ENST00000257290	NM_006206.4	1014	Gct/Tct																																																																															
LYN	4067	MSKCC	GRCh37	8	56910962	56910962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080833-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	31	329	0	ENST00000519728.1:c.1108G>A	p.Ala370Thr	p.A370T	ENST00000519728	NM_002350.3	370	Gca/Aca																																																																															
RASA1	5921	MSKCC	GRCh37	5	86674261	86674261	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080833-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	20	333	0	ENST00000274376.6:c.2393T>A	p.Met798Lys	p.M798K	ENST00000274376	NM_002890.2	798	aTg/aAg																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612810	228612810	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs148579172		P-0080833-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	31	592	0	ENST00000366696.1:c.217C>G	p.Arg73Gly	p.R73G	ENST00000366696	NM_003493.2	73	Cgc/Ggc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738752	145738752	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770327474		P-0080833-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	32	612	1	ENST00000428558.2:c.2312C>T	p.Thr771Met	p.T771M	ENST00000428558	NM_004260.3	771	aCg/aTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210787	5210787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080833-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	26	463	0	ENST00000357368.4:c.5264G>T	p.Gly1755Val	p.G1755V	ENST00000357368	NM_002850.3	1755	gGg/gTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53246345	53246345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080833-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	32	371	0	ENST00000375401.3:c.637G>T	p.Ala213Ser	p.A213S	ENST00000375401	NM_004187.3	213	Gcc/Tcc																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61305064	61305064	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080833-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	32	457	0	ENST00000341074.5:c.1062A>T	p.Leu354Phe	p.L354F	ENST00000341074	NM_002974.2	354	ttA/ttT																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976736	2976736	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080833-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	31	400	0	ENST00000396946.4:c.1276G>T	p.Ala426Ser	p.A426S	ENST00000396946	NM_032415.4	426	Gcc/Tcc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763479	59763479	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080833-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	15	356	0	ENST00000259008.2:c.2623G>T	p.Glu875Ter	p.E875*	ENST00000259008	NM_032043.2	875	Gaa/Taa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47144892	47144892	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AA			P-0080833-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	20	275	0	ENST00000409792.3:c.4861delinsTT	p.Gly1621LeufsTer12	p.G1621Lfs*12	ENST00000409792	NM_014159.6	1621	Gga/TTga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690847	89690847	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs587776667		P-0080856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	8	260	0	ENST00000371953.3:c.253+1G>T		p.X85_splice	ENST00000371953	NM_000314.4	85																																																																																
ATRX	546	MSKCC	GRCh37	X	76874407	76874407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	27	290	0	ENST00000373344.5:c.5315C>T	p.Ser1772Phe	p.S1772F	ENST00000373344	NM_000489.3	1772	tCc/tTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106099	27106100	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0080856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	190	479	0	ENST00000324856.7:c.5714_5715dup	p.Arg1906AsnfsTer18	p.R1906Nfs*18	ENST00000324856	NM_006015.4	1904	gaa/gAAaa																																																																															
BCL6	604	MSKCC	GRCh37	3	187451430	187451430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	161	401	0	ENST00000232014.4:c.52G>T	p.Val18Phe	p.V18F	ENST00000232014	NM_001130845.1	18	Gtt/Ttt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212615399	212615399	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369165560		P-0080857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	33	368	0	ENST00000342788.4:c.587G>A	p.Arg196His	p.R196H	ENST00000342788	NM_005235.2	196	cGt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0080857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	58	413	0	ENST00000275493.2:c.2303_2311dup	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099102	27099103	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	113	476	1	ENST00000324856.7:c.3524dup	p.Leu1176IlefsTer17	p.L1176Ifs*17	ENST00000324856	NM_006015.4	1173	atc/atCc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101259	27101259	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	95	524	0	ENST00000324856.7:c.4541del	p.Thr1514ArgfsTer13	p.T1514Rfs*13	ENST00000324856	NM_006015.4	1514	aCg/ag																																																																															
RET	5979	MSKCC	GRCh37	10	43615578	43615578	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373594744		P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	112	440	0	ENST00000355710.3:c.2657G>A	p.Arg886Gln	p.R886Q	ENST00000355710	NM_020975.4	886	cGg/cAg																																																																															
HRAS	3265	MSKCC	GRCh37	11	534270	534270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	92	404	0	ENST00000311189.7:c.53C>T	p.Ala18Val	p.A18V	ENST00000311189		18	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	67	461	1	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	102	395	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
B2M	567	MSKCC	GRCh37	15	45003812	45003812	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	10	415	0	ENST00000558401.1:c.67+1G>A		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	62	435	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																															
B2M	567	MSKCC	GRCh37	15	45007896	45007897	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	83	383	0	ENST00000558401.1:c.346+1dup		p.W115fs	ENST00000558401	NM_004048.2	115	tgg/tGgg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3645613	3645613	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200807331		P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	89	324	1	ENST00000294008.3:c.2006G>A	p.Arg669His	p.R669H	ENST00000294008	NM_032444.2	669	cGc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819210	3819210	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141734994		P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	93	419	0	ENST00000262367.5:c.3025G>A	p.Asp1009Asn	p.D1009N	ENST00000262367	NM_004380.2	1009	Gat/Aat																																																																															
CTCF	10664	MSKCC	GRCh37	16	67655479	67655479	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs769948988		P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	35	378	0	ENST00000264010.4:c.1342C>T	p.Arg448Ter	p.R448*	ENST00000264010	NM_006565.3	448	Cga/Tga																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016610	12016610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	66	362	1	ENST00000353533.5:c.746G>A	p.Gly249Asp	p.G249D	ENST00000353533	NM_003010.3	249	gGc/gAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	85	280	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120178	70120178	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057518216		P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	102	344	0	ENST00000245479.2:c.1180C>T	p.Arg394Ter	p.R394*	ENST00000245479	NM_000346.3	394	Cga/Tga																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39647446	39647446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	59	386	0	ENST00000262039.4:c.2618C>T	p.Ala873Val	p.A873V	ENST00000262039	NM_002647.2	873	gCa/gTa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376248	15376248	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	57	324	1	ENST00000263377.2:c.766del	p.Gln256SerfsTer27	p.Q256Sfs*27	ENST00000263377	NM_058243.2	256	Cag/ag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222119	2222119	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762523174		P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	75	459	0	ENST00000398665.3:c.2951C>T	p.Thr984Met	p.T984M	ENST00000398665	NM_032482.2	984	aCg/aTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223510	36223510	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	92	594	0	ENST00000222270.7:c.6064del	p.Asp2022ThrfsTer18	p.D2022Tfs*18	ENST00000222270	NM_014727.1	2020	ccG/cc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383075	42383075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	54	185	0	ENST00000221972.3:c.95C>T	p.Ala32Val	p.A32V	ENST00000221972	NM_021601.3	32	gCc/gTc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5208330	5208330	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	77	428	0	ENST00000357368.4:c.5560del	p.Glu1854ArgfsTer59	p.E1854Rfs*59	ENST00000357368	NM_002850.3	1854	Gag/ag																																																																															
INSR	3643	MSKCC	GRCh37	19	7293878	7293878	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	76	434	0	ENST00000302850.5:c.25del	p.Ala9ArgfsTer56	p.A9Rfs*56	ENST00000302850	NM_000208.2	9	Gcg/cg																																																																															
CASP8	841	MSKCC	GRCh37	2	202139625	202139626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	94	395	0	ENST00000358485.4:c.790dup	p.Val264GlyfsTer13	p.V264Gfs*13	ENST00000358485	NM_001080125.1	262	-/G																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	66	500	0	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030670	48030670	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs63750253		P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	88	460	0	ENST00000234420.5:c.3284G>A	p.Arg1095His	p.R1095H	ENST00000234420	NM_000179.2	1095	cGc/cAc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030692	48030692	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	71	464	0	ENST00000234420.5:c.3312del	p.Phe1104LeufsTer11	p.F1104Lfs*11	ENST00000234420	NM_000179.2	1102	acT/ac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	64	432	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070349	37070349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1220422495		P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	102	421	0	ENST00000231790.2:c.1489del	p.Arg497GlyfsTer11	p.R497Gfs*11	ENST00000231790	NM_000249.3	495	aCc/ac																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	170	457	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
RHOA	387	MSKCC	GRCh37	3	49405964	49405964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	78	347	0	ENST00000418115.1:c.174G>T	p.Trp58Cys	p.W58C	ENST00000418115	NM_001664.2	58	tgG/tgT																																																																															
MITF	4286	MSKCC	GRCh37	3	70014295	70014295	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756044021		P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	79	407	0	ENST00000352241.4:c.1459G>A	p.Val487Ile	p.V487I	ENST00000352241	NM_198159.2	487	Gtc/Atc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249361	153249361	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	67	344	0	ENST00000281708.4:c.1417del	p.Arg473GlufsTer25	p.R473Efs*25	ENST00000281708	NM_033632.3	473	Aga/ga																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1795668	1795668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	108	334	0	ENST00000260795.2:c.7G>A	p.Ala3Thr	p.A3T	ENST00000260795		3	Gcc/Acc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553506	106553506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	91	434	0	ENST00000369096.4:c.1471G>A	p.Ala491Thr	p.A491T	ENST00000369096	NM_001198.3	491	Gcg/Acg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117706974	117706974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776027945		P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	79	379	0	ENST00000368508.3:c.2176G>A	p.Val726Ile	p.V726I	ENST00000368508	NM_002944.2	726	Gtt/Att																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405953	157405954	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	106	506	0	ENST00000346085.5:c.2201dup	p.Ser736IlefsTer27	p.S736Ifs*27	ENST00000346085	NM_020732.3	732	ccg/ccGg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910738	29910738	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	77	378	0	ENST00000376809.5:c.278C>T	p.Ala93Val	p.A93V	ENST00000376809	NM_002116.7	93	gCc/gTc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148514998	148515000	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-	rs775039041		P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	88	405	0	ENST00000320356.2:c.1209_1211del	p.Glu404del	p.E404del	ENST00000320356	NM_004456.4	403	gaAGAg/gag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	65	370	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240795	55240795	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373336251		P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	199	468	0	ENST00000275493.2:c.2039G>A	p.Arg680Gln	p.R680Q	ENST00000275493	NM_005228.3	680	cGg/cAg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135785984	135785984	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	94	401	0	ENST00000298552.3:c.1237del	p.Gln413ArgfsTer27	p.Q413Rfs*27	ENST00000298552	NM_001162426.1	413	Cag/ag																																																																															
STAG2	10735	MSKCC	GRCh37	X	123224762	123224763	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	62	219	0	ENST00000218089.9:c.3531_3532del	p.Arg1177SerfsTer7	p.R1177Sfs*7	ENST00000218089	NM_001042749.1	1176	GAg/g																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458024	120458024	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	103	435	0	ENST00000256646.2:c.7321A>C	p.Thr2441Pro	p.T2441P	ENST00000256646	NM_024408.3	2441	Acc/Ccc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256425	16256425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	114	525	0	ENST00000375759.3:c.3690G>T	p.Met1230Ile	p.M1230I	ENST00000375759	NM_015001.2	1230	atG/atT																																																																															
CDC42	998	MSKCC	GRCh37	1	22408273	22408273	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	18	296	0	ENST00000344548.3:c.168del	p.Phe56LeufsTer15	p.F56Lfs*15	ENST00000344548	NM_001039802.1	55	cTt/ct																																																																															
PARP1	142	MSKCC	GRCh37	1	226551730	226551730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	84	433	0	ENST00000366794.5:c.2700G>T	p.Met900Ile	p.M900I	ENST00000366794	NM_001618.3	900	atG/atT																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900971	114900971	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	114	428	0	ENST00000543371.1:c.581C>A	p.Pro194His	p.P194H	ENST00000543371	NM_001198531.1	194	cCt/cAt																																																																															
RET	5979	MSKCC	GRCh37	10	43596078	43596078	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	72	434	0	ENST00000355710.3:c.245A>C	p.Glu82Ala	p.E82A	ENST00000355710	NM_020975.4	82	gAg/gCg																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316033	14316033	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			89	21	205	0	ENST00000256196.4:c.392T>C	p.Leu131Pro	p.L131P	ENST00000256196		131	cTg/cCg																																																																															
WT1	7490	MSKCC	GRCh37	11	32449550	32449550	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	68	394	0	ENST00000332351.3:c.824A>G	p.Asp275Gly	p.D275G	ENST00000332351	NM_024426.4	275	gAc/gGc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64571820	64571820	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770686655		P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	83	345	0	ENST00000337652.1:c.1834C>T	p.Arg612Cys	p.R612C	ENST00000337652	NM_130803.2	612	Cgc/Tgc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43707910	43707911	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	85	462	0	ENST00000382044.4:c.4970dup	p.Ile1658AspfsTer22	p.I1658Dfs*22	ENST00000382044	NM_001141980.1	1657	aag/aaAg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029512	14029512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	85	411	0	ENST00000311895.7:c.1723C>T	p.Pro575Ser	p.P575S	ENST00000311895	NM_005236.2	575	Cca/Tca																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857697	9857697	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1284100964		P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	101	521	0	ENST00000330684.3:c.3704A>G	p.Lys1235Arg	p.K1235R	ENST00000330684	NM_001134407.1	1235	aAg/aGg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40359719	40359719	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	84	365	0	ENST00000293328.3:c.1934C>A	p.Pro645His	p.P645H	ENST00000293328	NM_012448.3	645	cCt/cAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597461	10597461	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	89	356	0	ENST00000171111.5:c.1742T>C	p.Val581Ala	p.V581A	ENST00000171111	NM_203500.1	581	gTg/gCg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276780	15276780	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	84	518	0	ENST00000263388.2:c.5485del	p.Ala1829LeufsTer82	p.A1829Lfs*82	ENST00000263388	NM_000435.2	1829	Gct/ct																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2220113	2220113	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	22	338	0	ENST00000398665.3:c.2698A>G	p.Thr900Ala	p.T900A	ENST00000398665	NM_032482.2	900	Acc/Gcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216501	36216501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	111	417	0	ENST00000222270.7:c.3764G>A	p.Cys1255Tyr	p.C1255Y	ENST00000222270	NM_014727.1	1255	tGt/tAt																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422992	47422992	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	99	441	0	ENST00000404338.3:c.1060A>G	p.Asn354Asp	p.N354D	ENST00000404338	NM_004491.4	354	Aat/Gat																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376202	225376202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	36	335	0	ENST00000264414.4:c.752G>A	p.Cys251Tyr	p.C251Y	ENST00000264414	NM_003590.4	251	tGc/tAc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659994	227659994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	86	476	0	ENST00000305123.5:c.3461G>A	p.Gly1154Glu	p.G1154E	ENST00000305123	NM_005544.2	1154	gGg/gAg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29090057	29090057	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			73	19	94	0	ENST00000328354.6:c.1424T>C	p.Phe475Ser	p.F475S	ENST00000328354	NM_007194.3	475	tTt/tCt																																																																															
EP300	2033	MSKCC	GRCh37	22	41569681	41569681	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	68	446	0	ENST00000263253.7:c.4676del	p.Asn1559IlefsTer5	p.N1559Ifs*5	ENST00000263253	NM_001429.3	1558	Aaa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86667953	86667953	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	20	361	0	ENST00000274376.6:c.1717C>T	p.Gln573Ter	p.Q573*	ENST00000274376	NM_002890.2	573	Cag/Tag																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225747	26225747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	121	564	0	ENST00000360408.1:c.365C>A	p.Pro122His	p.P122H	ENST00000360408	NM_003532.2	122	cCt/cAt																																																																															
MET	4233	MSKCC	GRCh37	7	116339609	116339609	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	31	425	0	ENST00000397752.3:c.471G>T	p.Glu157Asp	p.E157D	ENST00000397752	NM_000245.2	157	gaG/gaT																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38184339	38184339	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	121	386	0	ENST00000317025.8:c.1617del	p.Gln540LysfsTer5	p.Q540Kfs*5	ENST00000317025	NM_023034.1	539	ggG/gg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206658404	206658404	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781938435		P-0080861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	122	450	1	ENST00000367120.3:c.1498C>T	p.Arg500Trp	p.R500W	ENST00000367120	NM_014002.3	500	Cgg/Tgg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88676897	88676897	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782682		P-0080861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	49	222	0	ENST00000372037.3:c.682C>T	p.Arg228Ter	p.R228*	ENST00000372037	NM_004329.2	228	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	25	241	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060763	38060765	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0080861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	70	485	0	ENST00000250448.2:c.1224_1226del	p.Ser409del	p.S409del	ENST00000250448	NM_004496.3	408	tcCTCg/tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0080861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	137	456	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670357	134670357	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369940994		P-0080861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	116	399	0	ENST00000398015.3:c.268C>T	p.Arg90Cys	p.R90C	ENST00000398015	NM_004441.4	90	Cgc/Tgc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056053	26056067	+	inframe_deletion	In_Frame_Del	DEL	CCTTGGGCTTAGCGG	CCTTGGGCTTAGCGG	-	rs756916945		P-0080861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	163	447	0	ENST00000343677.2:c.590_604del	p.Ala197_Lys201del	p.A197_K201del	ENST00000343677	NM_005319.3	197	gCCGCTAAGCCCAAGGtt/gtt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103506143	103506143	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	75	292	0	ENST00000355739.4:c.301G>T	p.Asp101Tyr	p.D101Y	ENST00000355739	NM_000123.3	101	Gac/Tac																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412290	63412290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	76	552	0	ENST00000330258.3:c.877G>T	p.Val293Leu	p.V293L	ENST00000330258	NM_152424.3	293	Gta/Tta																																																																															
APC	324	MSKCC	GRCh37	5	112175324	112175325	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0080865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	214	399	0	ENST00000257430.4:c.4035dup	p.Ser1346IlefsTer8	p.S1346Ifs*8	ENST00000257430	NM_000038.5	1345	gaa/gAaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258970	153258970	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0080865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	86	303	0	ENST00000281708.4:c.845C>A	p.Ser282Ter	p.S282*	ENST00000281708	NM_033632.3	282	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057520008		P-0080865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	156	434	0	ENST00000269305.4:c.613T>C	p.Tyr205His	p.Y205H	ENST00000269305	NM_001126112.2	205	Tat/Cat																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066483	94066483	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0080865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	121	382	0	ENST00000369303.4:c.1276C>T	p.Arg426Ter	p.R426*	ENST00000369303	NM_004440.3	426	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0080876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	39	432	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0080876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	17	261	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175179	112175187	+	frameshift_variant	Frame_Shift_Del	DEL	AGATTCTGC	AGATTCTGC	G			P-0080876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	38	436	0	ENST00000257430.4:c.3888_3896delinsG	p.Asp1297Ter	p.D1297*	ENST00000257430	NM_000038.5	1296	gcAGATTCTGCt/gcGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0080880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	16	204	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574030	7574030	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	135	325	0	ENST00000269305.4:c.997del	p.Arg333ValfsTer12	p.R333Vfs*12	ENST00000269305	NM_001126112.2	333	Cgt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0080881-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			716	59	448	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0080881-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	40	438	0	ENST00000324856.7:c.1010G>A	p.Trp337Ter	p.W337*	ENST00000324856	NM_006015.4	337	tGg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080881-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	14	259	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827739	72827740	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0080881-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	60	356	0	ENST00000268489.5:c.8841dup	p.Arg2948ThrfsTer19	p.R2948Tfs*19	ENST00000268489	NM_006885.3	2947	-/A																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971188	21971189	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0080881-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	56	370	0	ENST00000304494.5:c.169dup	p.Ala57GlyfsTer63	p.A57Gfs*63	ENST00000304494	NM_000077.4	57	gcc/gGcc																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0080902-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			73	65	323	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577561	7577561	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080902-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	80	392	0	ENST00000269305.4:c.720T>A	p.Ser240Arg	p.S240R	ENST00000269305	NM_001126112.2	240	agT/agA																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022685	31022685	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080902-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	27	493	0	ENST00000375687.4:c.2170C>G	p.Leu724Val	p.L724V	ENST00000375687	NM_015338.5	724	Ctg/Gtg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522760	67522762	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0080902-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	38	463	0	ENST00000274335.5:c.259_261del	p.Pro87del	p.P87del	ENST00000274335		86	aCACca/aca																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983092	201983093	+	missense_variant	Missense_Mutation	DNP	TA	TA	CT			P-0080902-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	87	514	0	ENST00000359651.3:c.941_942delinsCT	p.Leu314Pro	p.L314P	ENST00000359651		314	cTA/cCT																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372165	45372165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080902-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	24	384	0	ENST00000262160.6:c.1004G>A	p.Gly335Glu	p.G335E	ENST00000262160	NM_005901.5	335	gGa/gAa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43784262	43784284	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGCTGTTTGTTCAGGATTGGA	CCAGCTGTTTGTTCAGGATTGGA	-			P-0080914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	11	448	0	ENST00000382044.4:c.202_224del	p.Ser68ArgfsTer7	p.S68Rfs*7	ENST00000382044	NM_001141980.1	68	TCCAATCCTGAACAAACAGCTGGa/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs864622237		P-0080923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	44	343	0	ENST00000269305.4:c.700T>A	p.Tyr234Asn	p.Y234N	ENST00000269305	NM_001126112.2	234	Tac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0080923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	18	252	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0080926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	107	413	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
SRC	6714	MSKCC	GRCh37	20	36030854	36030854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	76	363	0	ENST00000358208.4:c.1133C>T	p.Ala378Val	p.A378V	ENST00000358208		378	gCg/gTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119751	70119751	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	88	269	0	ENST00000245479.2:c.754del	p.Leu252Ter	p.L252*	ENST00000245479	NM_000346.3	251	gaC/ga																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264296	30264296	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	25	170	0	ENST00000322652.5:c.35del	p.Gly12AlafsTer60	p.G12Afs*60	ENST00000322652	NM_015355.2	11	Ggg/gg																																																																															
APC	324	MSKCC	GRCh37	5	112175748	112175757	+	frameshift_variant	Frame_Shift_Del	DEL	ATACTTTATT	ATACTTTATT	-			P-0080926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	63	524	0	ENST00000257430.4:c.4458_4467del	p.Thr1487IlefsTer17	p.T1487Ifs*17	ENST00000257430	NM_000038.5	1486	gATACTTTATTa/ga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0080964-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			323	54	307	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	12	219	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	17	283	0				ENST00000310581	NM_198253.2																																																																																	
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913381		P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	24	406	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	28	419	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185181413	185181413	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	18	312	0	ENST00000265026.3:c.1354G>C	p.Glu452Gln	p.E452Q	ENST00000265026	NM_004721.4	452	Gaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	33	410	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																															
ALK	238	MSKCC	GRCh37	2	30143521	30143521	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1459946897		P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	14	291	0	ENST00000389048.3:c.5G>A	p.Gly2Glu	p.G2E	ENST00000389048	NM_004304.4	2	gGa/gAa																																																																															
ATRX	546	MSKCC	GRCh37	X	76939309	76939309	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	29	434	1	ENST00000373344.5:c.1439C>A	p.Thr480Lys	p.T480K	ENST00000373344	NM_000489.3	480	aCa/aAa																																																																															
TET2	54790	MSKCC	GRCh37	4	106197382	106197382	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	29	316	0	ENST00000380013.4:c.5715G>C	p.Lys1905Asn	p.K1905N	ENST00000380013	NM_001127208.2	1905	aaG/aaC																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212086	5212086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139009302		P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	38	484	1	ENST00000357368.4:c.4945G>A	p.Val1649Met	p.V1649M	ENST00000357368	NM_002850.3	1649	Gtg/Atg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155374	185155374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	22	421	0	ENST00000265026.3:c.615C>G	p.Ile205Met	p.I205M	ENST00000265026	NM_004721.4	205	atC/atG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435135	49435135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	22	347	0	ENST00000301067.7:c.6418G>A	p.Asp2140Asn	p.D2140N	ENST00000301067	NM_003482.3	2140	Gac/Aac																																																																															
AKT1	207	MSKCC	GRCh37	14	105239423	105239423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	28	497	0	ENST00000349310.3:c.964G>A	p.Glu322Lys	p.E322K	ENST00000349310	NM_001014432.1	322	Gag/Aag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779545	3779545	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	29	508	0	ENST00000262367.5:c.5503G>T	p.Glu1835Ter	p.E1835*	ENST00000262367	NM_004380.2	1835	Gaa/Taa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514682	103514682	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	42	452	0	ENST00000355739.4:c.1183C>G	p.Leu395Val	p.L395V	ENST00000355739	NM_000123.3	395	Ctt/Gtt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157431667	157431667	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	28	365	0	ENST00000346085.5:c.2343G>C	p.Leu781Phe	p.L781F	ENST00000346085	NM_020732.3	781	ttG/ttC																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31385062	31385062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	25	368	0	ENST00000328111.2:c.1447G>A	p.Glu483Lys	p.E483K	ENST00000328111	NM_006892.3	483	Gag/Aag																																																																															
AXL	558	MSKCC	GRCh37	19	41758777	41758777	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	38	418	0	ENST00000301178.4:c.1831G>C	p.Glu611Gln	p.E611Q	ENST00000301178	NM_021913.4	611	Gag/Cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	17	270	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3827617	3827617	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	19	317	0	ENST00000262367.5:c.2155C>G	p.Gln719Glu	p.Q719E	ENST00000262367	NM_004380.2	719	Caa/Gaa																																																																															
NF1	4763	MSKCC	GRCh37	17	29592260	29592260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	11	291	0	ENST00000358273.4:c.4738G>A	p.Glu1580Lys	p.E1580K	ENST00000358273	NM_001042492.2	1580	Gaa/Aaa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38178630	38178630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	17	332	0	ENST00000317025.8:c.1769C>T	p.Ser590Phe	p.S590F	ENST00000317025	NM_023034.1	590	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579493	7579493	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1060501210		P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	36	473	0	ENST00000269305.4:c.194G>C	p.Arg65Thr	p.R65T	ENST00000269305	NM_001126112.2	65	aGa/aCa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226214	53226214	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	16	285	0	ENST00000375401.3:c.2635C>G	p.Gln879Glu	p.Q879E	ENST00000375401	NM_004187.3	879	Cag/Gag																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905531	50905531	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	43	497	0	ENST00000440232.2:c.659T>G	p.Val220Gly	p.V220G	ENST00000440232	NM_002691.3	220	gTg/gGg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843536	156843536	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	30	409	0	ENST00000524377.1:c.962T>C	p.Val321Ala	p.V321A	ENST00000524377	NM_002529.3	321	gTg/gCg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56839415	56839415	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	26	347	0	ENST00000308159.5:c.361-1G>A		p.X121_splice	ENST00000308159	NM_014669.4	121																																																																																
WT1	7490	MSKCC	GRCh37	11	32456273	32456273	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	19	367	0	ENST00000332351.3:c.619G>C	p.Glu207Gln	p.E207Q	ENST00000332351	NM_024426.4	207	Gag/Cag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921466	39921466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	51	369	0	ENST00000378444.4:c.4354G>A	p.Glu1452Lys	p.E1452K	ENST00000378444	NM_001123385.1	1452	Gaa/Aaa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687538	37687538	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	28	396	0	ENST00000447079.4:c.4442G>C	p.Arg1481Thr	p.R1481T	ENST00000447079	NM_015083.1	1481	aGa/aCa																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289202	33289202	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	34	401	0	ENST00000374542.5:c.350G>T	p.Arg117Leu	p.R117L	ENST00000374542	NM_001141970.1	117	cGg/cTg																																																																															
BTK	695	MSKCC	GRCh37	X	100604935	100604935	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	21	300	0	ENST00000308731.7:c.1918G>C	p.Glu640Gln	p.E640Q	ENST00000308731	NM_000061.2	640	Gag/Cag																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346338	73346338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013997-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			225	64	377	0	ENST00000377767.4:c.1462G>A	p.Asp488Asn	p.D488N	ENST00000377767	NM_014953.3	488	Gat/Aat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039291	47039291	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013997-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			365	112	370	1	ENST00000329236.7:c.683G>C	p.Arg228Pro	p.R228P	ENST00000329236	NM_001204466.1	228	cGc/cCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013997-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			246	45	269	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272378	15272378	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013997-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	125	467	0	ENST00000263388.2:c.6061G>T	p.Val2021Leu	p.V2021L	ENST00000263388	NM_000435.2	2021	Gtg/Ttg																																																																															
NF1	4763	MSKCC	GRCh37	17	29663785	29663785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013997-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	131	380	0	ENST00000358273.4:c.6280C>T	p.Leu2094Phe	p.L2094F	ENST00000358273	NM_001042492.2	2094	Ctt/Ttt																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139820284	139820284	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013997-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			396	134	404	0	ENST00000247668.2:c.1437G>T	p.Glu479Asp	p.E479D	ENST00000247668	NM_021138.3	479	gaG/gaT																																																																															
FLT3	2322	MSKCC	GRCh37	13	28636163	28636163	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013997-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			373	110	383	1	ENST00000241453.7:c.209A>T	p.Gln70Leu	p.Q70L	ENST00000241453	NM_004119.2	70	cAg/cTg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731242	162731242	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013997-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			545	29	420	0	ENST00000367921.3:c.1097C>T	p.Ser366Leu	p.S366L	ENST00000367921	NM_006182.2	366	tCa/tTa																																																																															
ALK	238	MSKCC	GRCh37	2	29754785	29754785	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013997-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			352	109	364	0	ENST00000389048.3:c.1150C>A	p.His384Asn	p.H384N	ENST00000389048	NM_004304.4	384	Cat/Aat																																																																															
MTOR	2475	MSKCC	GRCh37	1	11168283	11168283	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013997-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			373	101	349	0	ENST00000361445.4:c.7589A>T	p.Lys2530Ile	p.K2530I	ENST00000361445	NM_004958.3	2530	aAa/aTa																																																																															
ARAF	369	MSKCC	GRCh37	X	47428239	47428239	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013997-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	111	415	0	ENST00000377045.4:c.1199G>T	p.Arg400Leu	p.R400L	ENST00000377045	NM_001654.4	400	cGc/cTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180040027	180040027	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013997-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			376	98	391	0	ENST00000261937.6:c.3415C>A	p.Leu1139Met	p.L1139M	ENST00000261937	NM_182925.4	1139	Ctg/Atg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	402059	402059	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013997-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	110	432	0	ENST00000399788.2:c.4732G>T	p.Glu1578Ter	p.E1578*	ENST00000399788	NM_001042603.1	1578	Gag/Tag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048157	180048157	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013997-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	95	413	0	ENST00000261937.6:c.2116G>T	p.Ala706Ser	p.A706S	ENST00000261937	NM_182925.4	706	Gcg/Tcg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1953920	1953920	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013997-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			387	108	383	0	ENST00000382895.3:c.2099G>T	p.Arg700Met	p.R700M	ENST00000382895	NM_133330.2	700	aGg/aTg																																																																															
AXL	558	MSKCC	GRCh37	19	41744438	41744438	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013997-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			316	81	358	0	ENST00000301178.4:c.1058G>A	p.Trp353Ter	p.W353*	ENST00000301178	NM_021913.4	353	tGg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0046383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	217	365	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134885788	134885788	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757743061		P-0046383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	89	287	0	ENST00000398015.3:c.1699C>T	p.Arg567Trp	p.R567W	ENST00000398015	NM_004441.4	567	Cgg/Tgg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399409	139399411	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-	rs761020817		P-0046383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	253	357	6	ENST00000277541.6:c.4732_4734del	p.Val1578del	p.V1578del	ENST00000277541	NM_017617.3	1578	GTG/-																																																																															
DICER1	23405	MSKCC	GRCh37	14	95563005	95563005	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1421729263		P-0046383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	101	412	0	ENST00000343455.3:c.4252G>A	p.Glu1418Lys	p.E1418K	ENST00000343455	NM_177438.2	1418	Gag/Aag																																																																															
CALR	811	MSKCC	GRCh37	19	13054556	13054559	+	frameshift_variant	Frame_Shift_Del	DEL	GGAC	GGAC	-			P-0046383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	100	406	0	ENST00000316448.5:c.1084_1087del	p.Asp362ArgfsTer67	p.D362Rfs*67	ENST00000316448	NM_004343.3	361	caGGAC/ca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828453	72828453	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	111	378	0	ENST00000268489.5:c.8128del	p.His2710ThrfsTer36	p.H2710Tfs*36	ENST00000268489	NM_006885.3	2710	Cac/ac																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0052937-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			630	42	448	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0052937-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			402	21	314	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARAF	369	MSKCC	GRCh37	X	47426114	47426114	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052937-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			694	50	536	0	ENST00000377045.4:c.634T>A	p.Ser212Thr	p.S212T	ENST00000377045	NM_001654.4	212	Tcc/Acc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176330	24176330	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1057517825		P-0057232-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			312	83	321	0	ENST00000263121.7:c.1121G>A	p.Arg374Gln	p.R374Q	ENST00000263121	NM_003073.3	374	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579462	7579463	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0057232-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			445	133	596	0	ENST00000269305.4:c.224dup	p.Ala76CysfsTer73	p.A76Cfs*73	ENST00000269305	NM_001126112.2	75	cct/ccCt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445068	49445068	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057232-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			530	219	475	0	ENST00000301067.7:c.2398C>T	p.Gln800Ter	p.Q800*	ENST00000301067	NM_003482.3	800	Cag/Tag																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980568	1980568	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs950025435		P-0057232-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			571	134	532	0	ENST00000382895.3:c.4030G>A	p.Glu1344Lys	p.E1344K	ENST00000382895	NM_133330.2	1344	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971164	21971166	+	inframe_deletion	In_Frame_Del	DEL	AGC	AGC	-			P-0057232-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	89	503	0	ENST00000304494.5:c.192_194del	p.Leu65del	p.L65del	ENST00000304494	NM_000077.4	64	ctGCTc/ctc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0057232-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	71	301	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186501403	186501403	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057232-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	57	265	0	ENST00000323963.5:c.4T>G	p.Ser2Ala	p.S2A	ENST00000323963		2	Tct/Gct																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512332	149512332	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200684708		P-0057232-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			560	129	490	0	ENST00000261799.4:c.1108C>A	p.Arg370Ser	p.R370S	ENST00000261799	NM_002609.3	370	Cgc/Agc																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732993	74732993	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057232-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			584	85	441	0	ENST00000359995.5:c.250G>C	p.Glu84Gln	p.E84Q	ENST00000359995	NM_001195427.1	84	Gag/Cag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857964	9857964	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057232-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			440	100	475	0	ENST00000330684.3:c.3437A>T	p.Asp1146Val	p.D1146V	ENST00000330684	NM_001134407.1	1146	gAc/gTc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2115966	2115966	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057232-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	90	396	0	ENST00000349721.2:c.3601G>C	p.Ala1201Pro	p.A1201P	ENST00000349721	NM_003070.3	1201	Gcg/Ccg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637243	176637263	+	inframe_deletion	In_Frame_Del	DEL	TGTGGTTCAAAAGTGAAGCTC	TGTGGTTCAAAAGTGAAGCTC	-			P-0057232-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			610	110	497	0	ENST00000439151.2:c.1845_1865del	p.Gly616_Cys622del	p.G616_C622del	ENST00000439151	NM_022455.4	615	TGTGGTTCAAAAGTGAAGCTC/-																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31421470	31421470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057232-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			345	178	345	0	ENST00000344624.3:c.3434G>T	p.Arg1145Ile	p.R1145I	ENST00000344624		1145	aGa/aTa																																																																															
STK19	8859	MSKCC	GRCh37	6	31939826	31939826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057232-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			536	200	489	0	ENST00000375331.2:c.53G>A	p.Arg18Gln	p.R18Q	ENST00000375331	NM_004197.1	18	cGg/cAg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870589	40870589	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057232-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			642	102	447	0	ENST00000428826.2:c.814C>T	p.Gln272Ter	p.Q272*	ENST00000428826		272	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600422	10600422	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057232-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			482	114	469	0	ENST00000171111.5:c.1433T>C	p.Phe478Ser	p.F478S	ENST00000171111	NM_203500.1	478	tTt/tCt																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42852470	42852482	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAGGACTTCCT	GCCAGGACTTCCT	CTGCCG			P-0057232-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			493	73	448	1	ENST00000398585.3:c.604_616delinsCGGCAG	p.Lys203GlnfsTer33	p.K203Qfs*33	ENST00000398585	NM_001135099.1	202	AGGAAGTCCTGGCac/CGGCAGac																																																																															
ATM	472	MSKCC	GRCh37	11	108205768	108205768	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057330-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			345	114	544	0	ENST00000278616.4:c.8083G>T	p.Gly2695Cys	p.G2695C	ENST00000278616	NM_000051.3	2695	Ggt/Tgt																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204737488	204737488	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057330-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			435	114	599	0	ENST00000302823.3:c.625C>A	p.Pro209Thr	p.P209T	ENST00000302823	NM_005214.4	209	Cca/Aca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440000	56440000	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057330-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			465	36	608	0	ENST00000407977.2:c.592G>C	p.Asp198His	p.D198H	ENST00000407977		198	Gat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0057330-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			248	145	445	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748318	41748318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057330-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			335	59	566	0	ENST00000226382.2:c.451G>T	p.Ala151Ser	p.A151S	ENST00000226382	NM_003924.3	151	Gcc/Tcc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264443	30264443	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057330-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			465	67	625	0	ENST00000322652.5:c.178G>T	p.Ala60Ser	p.A60S	ENST00000322652	NM_015355.2	60	Gcg/Tcg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156621	55156621	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057330-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			422	50	669	0	ENST00000257290.5:c.3022G>C	p.Asp1008His	p.D1008H	ENST00000257290	NM_006206.4	1008	Gat/Cat																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78897393	78897393	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057330-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			510	98	852	1	ENST00000306801.3:c.2728G>T	p.Gly910Cys	p.G910C	ENST00000306801	NM_020761.2	910	Ggc/Tgc																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690027	33690027	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057330-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			504	75	700	0	ENST00000308377.4:c.800C>A	p.Pro267His	p.P267H	ENST00000308377	NM_152270.3	267	cCt/cAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934924	9934924	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057330-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	175	576	0	ENST00000330684.3:c.1366T>A	p.Cys456Ser	p.C456S	ENST00000330684	NM_001134407.1	456	Tgc/Agc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967113	25967114	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0057330-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			415	68	625	0	ENST00000435504.4:c.2092_2093delinsTT	p.Gly698Leu	p.G698L	ENST00000435504		698	GGa/TTa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115920	8115920	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057330-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			467	137	752	0	ENST00000346208.3:c.1266G>T	p.Met422Ile	p.M422I	ENST00000346208		422	atG/atT																																																																															
MALT1	10892	MSKCC	GRCh37	18	56412699	56412951	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTACAGAATTGAGAATTCCTATTATAACCATAGATTGTTGTTTTCATTGTTTAGTCCTGGATAATTTTGGGATTACCAAAATTCACGAGAGGCCAGAATTCACGAGAGGATAGTATCAGTTAAGATGTCTTATGTACTAGATTATATTGTGGCTTTCATTGATTTCATTATTAACAGTCCCTAATTTTTTTTTTTACAGGATCTAGATATTGATCCAAAAGATGCAAATAAAGGCACACCTGAAGAAACTGGC	GTACAGAATTGAGAATTCCTATTATAACCATAGATTGTTGTTTTCATTGTTTAGTCCTGGATAATTTTGGGATTACCAAAATTCACGAGAGGCCAGAATTCACGAGAGGATAGTATCAGTTAAGATGTCTTATGTACTAGATTATATTGTGGCTTTCATTGATTTCATTATTAACAGTCCCTAATTTTTTTTTTTACAGGATCTAGATATTGATCCAAAAGATGCAAATAAAGGCACACCTGAAGAAACTGGC	-			P-0057330-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			42	47	69	0	ENST00000348428.3:c.1912-199_1965del		p.X638_splice	ENST00000348428	NM_006785.3	638																																																																																
CEBPA	1050	MSKCC	GRCh37	19	33793088	33793091	+	frameshift_variant	Frame_Shift_Del	DEL	AGGA	AGGA	GC			P-0057330-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			385	51	508	0	ENST00000498907.2:c.230_233delinsGC	p.Phe77CysfsTer30	p.F77Cfs*30	ENST00000498907	NM_004364.3	77	tTCCTg/tGCg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061214	38061214	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059530-T07-IM7									Unknown	SOMATIC				MSK-IMPACT			239	53	402	0	ENST00000250448.2:c.775T>A	p.Tyr259Asn	p.Y259N	ENST00000250448	NM_004496.3	259	Tac/Aac																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0062548-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			174	170	295	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																																
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062548-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			569	27	441	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																																																															
SDHA	6389	MSKCC	GRCh37	5	251575	251575	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062548-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			819	110	433	0	ENST00000264932.6:c.1786G>C	p.Asp596His	p.D596H	ENST00000264932	NM_004168.2	596	Gac/Cac																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0062548-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			320	187	404	0	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
HIST1H3E	8353	MSKCC	GRCh37	6	26225648	26225648	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770438126		P-0062548-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			840	91	681	0	ENST00000360408.1:c.266C>T	p.Ala89Val	p.A89V	ENST00000360408	NM_003532.2	89	gCg/gTg																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158400	26158400	+	start_lost	Translation_Start_Site	SNP	G	G	A	rs140899305		P-0062548-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			427	169	390	0	ENST00000289316.2:c.3G>A	p.Met1?	p.M1?	ENST00000289316	NM_138720.2	1	atG/atA																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867551	45867551	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1019756624		P-0062548-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			498	522	596	0	ENST00000391945.4:c.757C>T	p.Arg253Cys	p.R253C	ENST00000391945	NM_000400.3	253	Cgc/Tgc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038803	47038804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0069089-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			61	58	224	0	ENST00000329236.7:c.583dup	p.Leu195ProfsTer29	p.L195Pfs*29	ENST00000329236	NM_001204466.1	193	-/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069089-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	57	236	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038961	12038961	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs1352122684		P-0069089-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	84	335	0	ENST00000396373.4:c.1253+1G>T		p.X418_splice	ENST00000396373	NM_001987.4	418																																																																																
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0071506-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	94	520	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0071506-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			72	105	616	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs768922431		P-0071506-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			61	96	493	0	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807354	1807354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071506-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	108	670	0	ENST00000260795.2:c.1603C>T	p.His535Tyr	p.H535Y	ENST00000260795		535	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7576870	7576870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs876659384		P-0074960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	129	579	0	ENST00000269305.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000269305	NM_001126112.2	326	Gaa/Taa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118701	115118701	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0074960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	167	500	0	ENST00000257566.3:c.640del	p.Ser214GlnfsTer29	p.S214Qfs*29	ENST00000257566	NM_016569.3	214	Tca/ca																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	90	243	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	144	414	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	127	360	0	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																																																															
RB1	5925	MSKCC	GRCh37	13	48881489	48881490	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	93	249	0	ENST00000267163.4:c.219_220del	p.Arg73SerfsTer36	p.R73Sfs*36	ENST00000267163	NM_000321.2	71	AGa/a																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	135	400	0	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
RET	5979	MSKCC	GRCh37	10	43602002	43602002	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754859905		P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	115	301	0	ENST00000355710.3:c.1046C>T	p.Ala349Val	p.A349V	ENST00000355710	NM_020975.4	349	gCg/gTg																																																																															
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	127	299	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	89	237	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006138	22006138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	106	301	0	ENST00000276925.6:c.265C>T	p.Arg89Trp	p.R89W	ENST00000276925	NM_004936.3	89	Cgg/Tgg																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732956	74732956	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	14	268	1	ENST00000359995.5:c.287del	p.Pro96ArgfsTer136	p.P96Rfs*136	ENST00000359995	NM_001195427.1	96	cCg/cg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	114	248	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
SMO	6608	MSKCC	GRCh37	7	128829075	128829075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1247591045		P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	43	233	0	ENST00000249373.3:c.88del	p.Ala30ArgfsTer25	p.A30Rfs*25	ENST00000249373	NM_005631.4	28	cGg/cg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223509	36223509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867769309		P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	111	424	0	ENST00000222270.7:c.6059C>T	p.Pro2020Leu	p.P2020L	ENST00000222270	NM_014727.1	2020	cCg/cTg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	119	323	0	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																															
POLE	5426	MSKCC	GRCh37	12	133214642	133214642	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145621558		P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	116	286	0	ENST00000320574.5:c.5636G>A	p.Arg1879His	p.R1879H	ENST00000320574	NM_006231.2	1879	cGt/cAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	109	343	0	ENST00000407977.2:c.349_350delinsA	p.Arg117ThrfsTer41	p.R117Tfs*41	ENST00000407977		117	CGc/Ac																																																																															
TP63	8626	MSKCC	GRCh37	3	189586388	189586388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1404019220		P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	87	311	0	ENST00000264731.3:c.1012C>T	p.Arg338Cys	p.R338C	ENST00000264731	NM_003722.4	338	Cgc/Tgc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244600	46244600	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	138	340	0	ENST00000334344.6:c.2697del	p.Lys899AsnfsTer28	p.K899Nfs*28	ENST00000334344	NM_152641.2	898	ccA/cc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099980	27099981	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	151	405	0	ENST00000324856.7:c.3861_3862del	p.Arg1287SerfsTer10	p.R1287Sfs*10	ENST00000324856	NM_006015.4	1287	AGa/a																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	94	310	1	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435933	56435933	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	147	379	0	ENST00000407977.2:c.1204C>T	p.Gln402Ter	p.Q402*	ENST00000407977		402	Cag/Tag																																																																															
AKT1	207	MSKCC	GRCh37	14	105243045	105243045	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	114	332	0	ENST00000349310.3:c.238T>G	p.Trp80Gly	p.W80G	ENST00000349310	NM_001014432.1	80	Tgg/Ggg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134251	11134251	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1218643327		P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	113	259	0	ENST00000344626.4:c.2917C>T	p.Arg973Trp	p.R973W	ENST00000344626	NM_003072.3	973	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132522	11132522	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778175819		P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	160	358	0	ENST00000344626.4:c.2738C>T	p.Pro913Leu	p.P913L	ENST00000344626	NM_003072.3	913	cCg/cTg																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51507971	51507971	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	87	264	0	ENST00000260433.2:c.787del	p.Arg263AspfsTer20	p.R263Dfs*20	ENST00000260433		263	Aga/ga																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206653251	206653251	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	141	378	0	ENST00000367120.3:c.1222C>A	p.Leu408Met	p.L408M	ENST00000367120	NM_014002.3	408	Ctg/Atg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732948	30732948	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	262	300	0	ENST00000359013.4:c.1636T>C	p.Trp546Arg	p.W546R	ENST00000359013	NM_001024847.2	546	Tgg/Cgg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030485	47030485	+	intron_variant	Intron	SNP	G	G	T			P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	185	299	0	ENST00000329236.7:c.201+1588G>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
SMARCA4	6597	MSKCC	GRCh37	19	11168978	11168978	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1388483526		P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	128	267	0	ENST00000344626.4:c.4472G>A	p.Arg1491Gln	p.R1491Q	ENST00000344626	NM_003072.3	1491	cGa/cAa																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46608835	46608835	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	96	293	0	ENST00000263734.3:c.2146G>T	p.Glu716Ter	p.E716*	ENST00000263734	NM_001430.4	716	Gag/Tag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56493809	56493809	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	132	373	0	ENST00000267101.3:c.3125G>T	p.Arg1042Leu	p.R1042L	ENST00000267101	NM_001982.3	1042	cGt/cTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092723	27092724	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	108	256	0	ENST00000324856.7:c.2748dup	p.Asn917GlnfsTer19	p.N917Qfs*19	ENST00000324856	NM_006015.4	915	tac/taCc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121435299	121435299	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	130	308	0	ENST00000257555.6:c.1332G>T	p.Gln444His	p.Q444H	ENST00000257555		444	caG/caT																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1940203	1940203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	50	139	0	ENST00000382895.3:c.1700C>A	p.Ala567Asp	p.A567D	ENST00000382895	NM_133330.2	567	gCc/gAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36208957	36208957	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	30	100	0	ENST00000222270.7:c.38del	p.Pro13LeufsTer33	p.P13Lfs*33	ENST00000222270	NM_014727.1	13	Cct/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0077384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	24	436	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	15	349	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RB1	5925	MSKCC	GRCh37	13	48923122	48923152	+	frameshift_variant	Frame_Shift_Del	DEL	GCTAAAAGTTTCTTGGATCACATTTTTATTA	GCTAAAAGTTTCTTGGATCACATTTTTATTA	-			P-0077384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	18	337	0	ENST00000267163.4:c.576_606del	p.Val193GlyfsTer11	p.V193Gfs*11	ENST00000267163	NM_000321.2	190	gtGCTAAAAGTTTCTTGGATCACATTTTTATTA/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0078372-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			209	150	497	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178643	56178643	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078372-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			272	164	373	0	ENST00000399503.3:c.3617del	p.Pro1206LeufsTer39	p.P1206Lfs*39	ENST00000399503	NM_005921.1	1206	Cct/ct																																																																															
PGR	5241	MSKCC	GRCh37	11	100999365	100999365	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078372-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			292	72	385	0	ENST00000325455.5:c.437A>G	p.Glu146Gly	p.E146G	ENST00000325455	NM_001202474.3	146	gAa/gGa																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45649936	45649936	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0078372-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			178	191	391	0	ENST00000407780.3:c.898+1G>T		p.X300_splice	ENST00000407780	NM_001283052.1	300																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66197793	66197793	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078372-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			279	64	322	0	ENST00000273854.3:c.2906C>A	p.Ser969Ter	p.S969*	ENST00000273854	NM_004439.5	969	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882025		P-0079489-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			574	114	647	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																															
RB1	5925	MSKCC	GRCh37	13	48951171	48951171	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587778846		P-0079489-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			357	53	352	0	ENST00000267163.4:c.1332+1G>A		p.X444_splice	ENST00000267163	NM_000321.2	444																																																																																
MSH2	4436	MSKCC	GRCh37	2	47703652	47703652	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079489-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			595	20	0	0	ENST00000233146.2:c.2152C>G	p.Gln718Glu	p.Q718E	ENST00000233146	NM_000251.2	718	Caa/Gaa																																																																															
STK11	6794	MSKCC	GRCh37	19	1218414	1218414	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0079489-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			448	102	504	0	ENST00000326873.7:c.291-2A>T		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																																
PNRC1	10957	MSKCC	GRCh37	6	89790729	89790729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079489-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			533	33	707	0	ENST00000336032.3:c.116C>T	p.Pro39Leu	p.P39L	ENST00000336032	NM_006813.2	39	cCg/cTg																																																																															
ABL1	25	MSKCC	GRCh37	9	133760808	133760808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079489-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			463	18	0	0	ENST00000318560.5:c.3131C>T	p.Ser1044Phe	p.S1044F	ENST00000318560	NM_005157.4	1044	tCt/tTt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1795762	1795762	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079489-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			595	32	684	0	ENST00000260795.2:c.101G>C	p.Arg34Pro	p.R34P	ENST00000260795		34	cGa/cCa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602895	10602895	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079489-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			536	101	649	0	ENST00000171111.5:c.683T>A	p.Leu228Gln	p.L228Q	ENST00000171111	NM_203500.1	228	cTg/cAg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022708	12022708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079489-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			647	70	796	0	ENST00000396373.4:c.814C>A	p.Pro272Thr	p.P272T	ENST00000396373	NM_001987.4	272	Ccc/Acc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081592	143081592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079489-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			622	49	566	0	ENST00000262992.4:c.1482G>T	p.Glu494Asp	p.E494D	ENST00000262992	NM_001101669.1	494	gaG/gaT																																																																															
ABL1	25	MSKCC	GRCh37	9	133729547	133729581	+	frameshift_variant	Frame_Shift_Del	DEL	GTGAAAATGACCCCAACCTTTTCGTTGCACTGTAT	GTGAAAATGACCCCAACCTTTTCGTTGCACTGTAT	-			P-0079489-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			563	47	513	0	ENST00000318560.5:c.177_211del	p.Ser59ArgfsTer8	p.S59Rfs*8	ENST00000318560	NM_005157.4	59	aGTGAAAATGACCCCAACCTTTTCGTTGCACTGTAT/a																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919045	50919045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079489-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			456	72	611	1	ENST00000440232.2:c.2782A>G	p.Ser928Gly	p.S928G	ENST00000440232	NM_002691.3	928	Agt/Ggt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41247863	41247863	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0079854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			304	72	295	0	ENST00000357654.3:c.670G>T	p.Ala224Ser	p.A224S	ENST00000357654	NM_007294.3	224	Gct/Tct																																																																															
ATM	472	MSKCC	GRCh37	11	108164040	108164040	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs1034235291		P-0079854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			111	88	231	0	ENST00000278616.4:c.4612G>T	p.Val1538Leu	p.V1538L	ENST00000278616	NM_000051.3	1538	Gta/Tta																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264411	30264411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			657	167	434	0	ENST00000322652.5:c.146G>A	p.Gly49Asp	p.G49D	ENST00000322652	NM_015355.2	49	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579503	7579503	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0079854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			57	592	517	0	ENST00000269305.4:c.184G>T	p.Glu62Ter	p.E62*	ENST00000269305	NM_001126112.2	62	Gaa/Taa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120491184	120491184	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587730290		P-0079854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	83	369	0	ENST00000256646.2:c.2605C>T	p.Arg869Trp	p.R869W	ENST00000256646	NM_024408.3	869	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433340	49433340	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0079854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			328	405	450	0	ENST00000301067.7:c.8107G>T	p.Glu2703Ter	p.E2703*	ENST00000301067	NM_003482.3	2703	Gag/Tag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120460296	120460296	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	207	440	0	ENST00000256646.2:c.6019G>T	p.Asp2007Tyr	p.D2007Y	ENST00000256646	NM_024408.3	2007	Gac/Tac																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538259	9538259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			215	73	346	1	ENST00000353224.5:c.1739G>A	p.Gly580Asp	p.G580D	ENST00000353224	NM_177990.2	580	gGc/gAc																																																																															
ARAF	369	MSKCC	GRCh37	X	47428175	47428176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0079854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			383	85	440	0	ENST00000377045.4:c.1137dup	p.Ile380HisfsTer7	p.I380Hfs*7	ENST00000377045	NM_001654.4	379	gcc/gCcc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960087	134960087	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			302	98	454	0	ENST00000398015.3:c.2446del	p.Glu816LysfsTer63	p.E816Kfs*63	ENST00000398015	NM_004441.4	815	tGg/tg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375160	31375160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			213	285	579	0	ENST00000328111.2:c.557C>T	p.Thr186Ile	p.T186I	ENST00000328111	NM_006892.3	186	aCc/aTc																																																																															
ATR	545	MSKCC	GRCh37	3	142226946	142226946	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			124	73	309	0	ENST00000350721.4:c.4858A>G	p.Thr1620Ala	p.T1620A	ENST00000350721	NM_001184.3	1620	Act/Gct																																																																															
BLM	641	MSKCC	GRCh37	15	91304383	91304383	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0079854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	77	407	0	ENST00000355112.3:c.1780A>C	p.Lys594Gln	p.K594Q	ENST00000355112	NM_000057.2	594	Aaa/Caa																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29207417	29207417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			28	427	329	0	ENST00000240100.2:c.379G>T	p.Val127Leu	p.V127L	ENST00000240100	NM_001394.6	127	Gtg/Ttg																																																																															
SCG5	6447	MSKCC	GRCh37	15	32972029	32972029	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0079854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			190	191	343	0	ENST00000300175.4:c.289G>T	p.Glu97Ter	p.E97*	ENST00000300175	NM_001144757.1	97	Gag/Tag																																																																															
ALK	238	MSKCC	GRCh37	2	30143168	30143168	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			298	183	486	0	ENST00000389048.3:c.358G>T	p.Ala120Ser	p.A120S	ENST00000389048	NM_004304.4	120	Gcc/Tcc																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39322628	39322628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			197	140	394	0	ENST00000373001.3:c.364G>T	p.Asp122Tyr	p.D122Y	ENST00000373001	NM_022157.3	122	Gac/Tac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212589816	212589816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			51	198	348	0	ENST00000342788.4:c.726G>C	p.Lys242Asn	p.K242N	ENST00000342788	NM_005235.2	242	aaG/aaC																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411993	63411993	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	236	588	0	ENST00000330258.3:c.1174G>C	p.Glu392Gln	p.E392Q	ENST00000330258	NM_152424.3	392	Gag/Cag																																																																															
HGF	3082	MSKCC	GRCh37	7	81339512	81339512	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			138	98	311	0	ENST00000222390.5:c.1492G>T	p.Gly498Trp	p.G498W	ENST00000222390	NM_000601.4	498	Ggg/Tgg																																																																															
KDR	3791	MSKCC	GRCh37	4	55972895	55972895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			76	123	263	0	ENST00000263923.4:c.1495G>A	p.Val499Ile	p.V499I	ENST00000263923	NM_002253.2	499	Gtt/Att																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0080002-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			479	185	393	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435510	110435510	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080002-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			472	80	544	0	ENST00000375856.3:c.2891G>C	p.Gly964Ala	p.G964A	ENST00000375856	NM_003749.2	964	gGc/gCc																																																																															
MAX	4149	MSKCC	GRCh37	14	65560535	65560535	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0080135-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			283	98	346	0	ENST00000358664.4:c.64-2A>G		p.X22_splice	ENST00000358664	NM_002382.4	22																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080135-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			232	50	271	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056298	27056298	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080135-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			403	99	545	0	ENST00000324856.7:c.1294A>G	p.Met432Val	p.M432V	ENST00000324856	NM_006015.4	432	Atg/Gtg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039295	47039312	+	inframe_deletion	In_Frame_Del	DEL	CCTGAACCCACACAGCAC	CCTGAACCCACACAGCAC	-			P-0080135-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			146	81	243	0	ENST00000329236.7:c.688_705del	p.Leu230_Thr235del	p.L230_T235del	ENST00000329236	NM_001204466.1	229	aaCCTGAACCCACACAGCACc/aac																																																																															
JAK2	3717	MSKCC	GRCh37	9	5055694	5055694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080135-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	64	278	0	ENST00000381652.3:c.962C>T	p.Pro321Leu	p.P321L	ENST00000381652	NM_004972.3	321	cCt/cTt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127375	55127375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080135-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			461	111	501	0	ENST00000257290.5:c.163G>A	p.Val55Met	p.V55M	ENST00000257290	NM_006206.4	55	Gtg/Atg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17952355	17952355	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0080191-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			418	131	465	0	ENST00000458235.1:c.985G>A	p.Glu329Lys	p.E329K	ENST00000458235	NM_000215.3	329	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0080191-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			218	38	326	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71090609	71090609	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080191-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			492	98	472	0	ENST00000318789.4:c.739A>T	p.Asn247Tyr	p.N247Y	ENST00000318789	NM_032682.5	247	Aac/Tac																																																																															
PARK2	5071	MSKCC	GRCh37	6	161970007	161970007	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080191-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			383	32	352	0	ENST00000366898.1:c.962A>T	p.Glu321Val	p.E321V	ENST00000366898	NM_004562.2	321	gAg/gTg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39262530	39262530	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0080191-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			255	24	393	0	ENST00000402219.2:c.975+1G>A		p.X325_splice	ENST00000402219	NM_005633.3	325																																																																																
SOX2	6657	MSKCC	GRCh37	3	181430687	181430687	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080191-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			530	30	572	0	ENST00000325404.1:c.539A>T	p.Tyr180Phe	p.Y180F	ENST00000325404	NM_003106.3	180	tAc/tTc																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20148636	20148636	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0080191-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			116	14	134	0	ENST00000379607.5:c.427G>A	p.Asp143Asn	p.D143N	ENST00000379607	NM_001412.3	143	Gac/Aac																																																																															
ATM	472	MSKCC	GRCh37	11	108155043	108155043	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs587779836		P-0080244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	75	411	0	ENST00000278616.4:c.3836G>A	p.Trp1279Ter	p.W1279*	ENST00000278616	NM_000051.3	1279	tGg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	60	293	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603135	48603136	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTCAGCTA			P-0080244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	46	371	0	ENST00000342988.3:c.1437_1438insTCAGCTAT	p.Pro480SerfsTer27	p.P480Sfs*27	ENST00000342988	NM_005359.5	479	gct/gcTTCAGCTAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	144	307	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0080438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	122	334	0				ENST00000310581	NM_198253.2																																																																																	
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	118	224	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0080444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	239	493	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968244	2968244	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1161484391		P-0080444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	155	429	0	ENST00000396946.4:c.1742C>T	p.Ala581Val	p.A581V	ENST00000396946	NM_032415.4	581	gCg/gTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89816223	89816223	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs367820147		P-0080444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	199	409	0	ENST00000389301.3:c.3154T>C	p.Phe1052Leu	p.F1052L	ENST00000389301	NM_000135.2	1052	Ttc/Ctc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125513725	125513736	+	inframe_deletion	In_Frame_Del	DEL	GAGTCTCCCAGT	GAGTCTCCCAGT	-			P-0080444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	15	388	0	ENST00000428830.2:c.854_865del	p.Glu285_Ser288del	p.E285_S288del	ENST00000428830	NM_001114121.2	285	GAGTCTCCCAGT/-																																																																															
SDHA	6389	MSKCC	GRCh37	5	233757	233757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	103	284	0	ENST00000264932.6:c.1061G>A	p.Gly354Glu	p.G354E	ENST00000264932	NM_004168.2	354	gGa/gAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0080445-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	54	351	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225339087	225339087	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0080445-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	36	332	0	ENST00000264414.4:c.2182C>T	p.Gln728Ter	p.Q728*	ENST00000264414	NM_003590.4	728	Cag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29553603	29553603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	39	165	0	ENST00000358273.4:c.2152G>T	p.Asp718Tyr	p.D718Y	ENST00000358273	NM_001042492.2	718	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs780442292		P-0080451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	183	254	0	ENST00000269305.4:c.401T>G	p.Phe134Cys	p.F134C	ENST00000269305	NM_001126112.2	134	tTt/tGt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25457176	25457176	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149095705		P-0080451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	159	251	1	ENST00000264709.3:c.2711C>T	p.Pro904Leu	p.P904L	ENST00000264709	NM_175629.2	904	cCg/cTg																																																																															
ALK	238	MSKCC	GRCh37	2	30143161	30143161	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1367800764		P-0080451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	190	304	0	ENST00000389048.3:c.365C>T	p.Thr122Met	p.T122M	ENST00000389048	NM_004304.4	122	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0080451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	97	180	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89791097	89791097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1476262394		P-0080451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	78	203	0	ENST00000336032.3:c.484C>T	p.Pro162Ser	p.P162S	ENST00000336032	NM_006813.2	162	Ccc/Tcc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207078	1207078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	74	428	0	ENST00000326873.7:c.166G>T	p.Gly56Trp	p.G56W	ENST00000326873	NM_000455.4	56	Ggg/Tgg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197725	123197725	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749851312		P-0080452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	29	316	0	ENST00000218089.9:c.1849C>T	p.Arg617Trp	p.R617W	ENST00000218089	NM_001042749.1	617	Cgg/Tgg																																																																															
NF2	4771	MSKCC	GRCh37	22	30038200	30038200	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	57	326	0	ENST00000338641.4:c.373C>T	p.Gln125Ter	p.Q125*	ENST00000338641	NM_000268.3	125	Cag/Tag																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372454	55372454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	145	530	0	ENST00000297316.4:c.1144C>T	p.His382Tyr	p.H382Y	ENST00000297316	NM_022454.3	382	Cat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0080452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	103	250	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
POT1	25913	MSKCC	GRCh37	7	124499156	124499156	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	85	263	0	ENST00000357628.3:c.557G>T	p.Gly186Val	p.G186V	ENST00000357628	NM_015450.2	186	gGc/gTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600019	10600019	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	82	399	0	ENST00000171111.5:c.1557C>G	p.Ile519Met	p.I519M	ENST00000171111	NM_203500.1	519	atC/atG																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483936	88483936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	46	393	0	ENST00000360948.2:c.1634G>A	p.Gly545Asp	p.G545D	ENST00000360948	NM_001012338.2	545	gGt/gAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900654	32900654	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	50	328	0	ENST00000380152.3:c.535C>G	p.His179Asp	p.H179D	ENST00000380152		179	Cat/Gat																																																																															
NF1	4763	MSKCC	GRCh37	17	29684338	29684338	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0080452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	72	356	0	ENST00000358273.4:c.7921G>T	p.Glu2641Ter	p.E2641*	ENST00000358273	NM_001042492.2	2641	Gaa/Taa																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475326	40475326	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	78	396	0	ENST00000264657.5:c.1700A>G	p.Asn567Ser	p.N567S	ENST00000264657	NM_139276.2	567	aAt/aGt																																																																															
MED12	9968	MSKCC	GRCh37	X	70341418	70341418	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	53	451	0	ENST00000374080.3:c.853G>T	p.Gly285Trp	p.G285W	ENST00000374080		285	Ggg/Tgg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372084	45372084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	91	334	0	ENST00000262160.6:c.1085G>T	p.Cys362Phe	p.C362F	ENST00000262160	NM_005901.5	362	tGt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0080462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	99	391	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11958307	11958308	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0080462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	35	218	0	ENST00000353533.5:c.217_218del	p.Ile73ArgfsTer9	p.I73Rfs*9	ENST00000353533	NM_003010.3	73	ATa/a																																																																															
APC	324	MSKCC	GRCh37	5	112179809	112179809	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs878853480		P-0080462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	45	440	0	ENST00000257430.4:c.8518G>A	p.Val2840Met	p.V2840M	ENST00000257430	NM_000038.5	2840	Gtg/Atg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56367819	56367819	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs757378728		P-0080462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	105	341	0	ENST00000348428.3:c.645C>G	p.Phe215Leu	p.F215L	ENST00000348428	NM_006785.3	215	ttC/ttG																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792718	33792731	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGTGCGCGGGCG	CAGGTGCGCGGGCG	GGGT			P-0080462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	153	131	224	ENST00000498907.2:c.590_603delinsACCC	p.Pro197HisfsTer118	p.P197Hfs*118	ENST00000498907	NM_004364.3	197	cCGCCCGCGCACCTG/cACCC																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812322	212812334	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGTGACTTCTC	CCTGTGACTTCTC	TTA			P-0080462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	53	365	0	ENST00000342788.4:c.242_254delinsTAA	p.Arg81LeufsTer5	p.R81Lfs*5	ENST00000342788	NM_005235.2	81	cGAGAAGTCACAGGc/cTAAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0080466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	183	392	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0080466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	69	277	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038563	47038563	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0080466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	76	214	0	ENST00000329236.7:c.493+1G>T		p.X165_splice	ENST00000329236	NM_001204466.1	165																																																																																
NKX2-1	7080	MSKCC	GRCh37	14	36986961	36986961	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057524869		P-0080466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	78	319	0	ENST00000354822.5:c.728G>A	p.Arg243His	p.R243H	ENST00000354822	NM_001079668.2	243	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0080467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	477	402	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0080467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	218	397	0	ENST00000257430.4:c.4393_4394dup	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	115	263	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ATR	545	MSKCC	GRCh37	3	142238626	142238626	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0080467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	110	272	0	ENST00000350721.4:c.4267G>C	p.Glu1423Gln	p.E1423Q	ENST00000350721	NM_001184.3	1423	Gag/Cag																																																																															
HIST2H3D	653604	MSKCC	GRCh37	1	149784862	149784862	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	55	249	0	ENST00000331491.1:c.375C>G	p.Ile125Met	p.I125M	ENST00000331491	NM_001123375.2	125	atC/atG																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0080468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	111	425	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0080468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	121	354	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423601	88423601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	98	422	0	ENST00000360948.2:c.2234G>A	p.Arg745Gln	p.R745Q	ENST00000360948	NM_001012338.2	745	cGg/cAg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563204	21563204	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769991034		P-0080468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	232	507	0	ENST00000382592.4:c.715G>A	p.Val239Ile	p.V239I	ENST00000382592	NM_014572.2	239	Gta/Ata																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136051	64136051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	46	395	0	ENST00000334205.4:c.1312G>A	p.Ala438Thr	p.A438T	ENST00000334205	NM_003942.2	438	Gca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0080468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	161	305	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578504	7578515	+	inframe_deletion	In_Frame_Del	DEL	AGGGCAGGTCTT	AGGGCAGGTCTT	-			P-0080468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	129	484	0	ENST00000269305.4:c.415_426del	p.Lys139_Pro142del	p.K139_P142del	ENST00000269305	NM_001126112.2	139	AAGACCTGCCCT/-																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481904	56481904	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0080468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	169	423	0	ENST00000267101.3:c.832A>C	p.Thr278Pro	p.T278P	ENST00000267101	NM_001982.3	278	Acc/Ccc																																																																															
CIC	23152	MSKCC	GRCh37	19	42797393	42797393	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377237325		P-0080468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	109	480	0	ENST00000575354.2:c.3755C>T	p.Pro1252Leu	p.P1252L	ENST00000575354	NM_015125.3	1252	cCt/cTt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925316	114925317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769592153		P-0080469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	167	354	9	ENST00000543371.1:c.1403dup	p.Cys469ValfsTer8	p.C469Vfs*8	ENST00000543371	NM_001198531.1	465	aga/agAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0080469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	305	367	0	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41408924	41408924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778928297		P-0080469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	357	382	0	ENST00000373198.4:c.502G>A	p.Val168Ile	p.V168I	ENST00000373198	NM_133170.3	168	Gtc/Atc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928226	178928226	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519872		P-0080469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	201	468	0	ENST00000263967.3:c.1412C>T	p.Pro471Leu	p.P471L	ENST00000263967	NM_006218.2	471	cCa/cTa																																																																															
RB1	5925	MSKCC	GRCh37	13	49039414	49039414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	487	421	0	ENST00000267163.4:c.2399C>T	p.Pro800Leu	p.P800L	ENST00000267163	NM_000321.2	800	cCt/cTt																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86546653	86546653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080490-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	188	368	0	ENST00000262426.4:c.1102C>A	p.Gln368Lys	p.Q368K	ENST00000262426	NM_001451.2	368	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577036	7577200	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGGGCAGCTCGTGGTGAGGCTCCCCTTTCTTGCGGAGATTCTCTTCCTCTGTGCGCCGGTCTCTCCCAGGACAGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCACTACTCAGGATAGGAAAAGAGAAGCAAGAGGCAGTAAGGAAATCA	GGGGGCAGCTCGTGGTGAGGCTCCCCTTTCTTGCGGAGATTCTCTTCCTCTGTGCGCCGGTCTCTCCCAGGACAGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCACTACTCAGGATAGGAAAAGAGAAGCAAGAGGCAGTAAGGAAATCA	-			P-0080490-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	167	440	0	ENST00000269305.4:c.783-45_902del		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
MAP3K13	9175	MSKCC	GRCh37	3	185161309	185161309	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs759336796		P-0080490-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	139	342	0	ENST00000265026.3:c.736C>T	p.Arg246Ter	p.R246*	ENST00000265026	NM_004721.4	246	Cga/Tga																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056653	26056654	+	start_lost	Translation_Start_Site	DNP	AC	AC	GG			P-0080490-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	150	308	0	ENST00000343677.2:c.3_4delinsCC	p.MetSer1_?2	p.MS1_?2	ENST00000343677	NM_005319.3	1	atGTcc/atCCcc																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0080493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	57	404	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274877	41274877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	47	388	0	ENST00000349496.5:c.1127G>A	p.Arg376His	p.R376H	ENST00000349496	NM_001904.3	376	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577497	7577497	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0080493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	57	337	0	ENST00000269305.4:c.782+2T>C		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0080493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	55	271	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937495	32937495	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	78	448	0	ENST00000380152.3:c.8156T>G	p.Ile2719Ser	p.I2719S	ENST00000380152		2719	aTt/aGt																																																																															
ID3	3399	MSKCC	GRCh37	1	23885467	23885468	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0080493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	24	294	0	ENST00000374561.5:c.343dup	p.Arg115LysfsTer48	p.R115Kfs*48	ENST00000374561	NM_002167.4	115	agg/aAgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0080496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	120	327	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710652	114710652	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	208	308	0	ENST00000543371.1:c.137C>A	p.Ser46Ter	p.S46*	ENST00000543371	NM_001198531.1	46	tCg/tAg																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80336402	80336402	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769315863		P-0080496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	204	405	0	ENST00000286548.4:c.917G>A	p.Arg306Gln	p.R306Q	ENST00000286548	NM_002072.3	306	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579462	7579463	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0080496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	570	510	0	ENST00000269305.4:c.224dup	p.Ala76CysfsTer73	p.A76Cfs*73	ENST00000269305	NM_001126112.2	75	cct/ccCt																																																																															
APC	324	MSKCC	GRCh37	5	112175069	112175069	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	320	342	0	ENST00000257430.4:c.3778C>T	p.Gln1260Ter	p.Q1260*	ENST00000257430	NM_000038.5	1260	Cag/Tag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176684086	176684086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	184	370	0	ENST00000439151.2:c.4900C>T	p.Arg1634Trp	p.R1634W	ENST00000439151	NM_022455.4	1634	Cgg/Tgg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570117	95570118	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTA			P-0080496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	169	418	0	ENST00000343455.3:c.3613_3615dup	p.Tyr1205dup	p.Y1205dup	ENST00000343455	NM_177438.2	1205	-/TAC																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984729	72984729	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs139936828		P-0080496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	177	413	0	ENST00000268489.5:c.2855A>C	p.Lys952Thr	p.K952T	ENST00000268489	NM_006885.3	952	aAg/aCg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs879255270		P-0080497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	141	373	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274231	10274231	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367543131		P-0080497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	38	359	0	ENST00000330684.3:c.38C>T	p.Pro13Leu	p.P13L	ENST00000330684	NM_001134407.1	13	cCg/cTg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502735	149502735	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763239423		P-0080497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	159	386	0	ENST00000261799.4:c.2053C>T	p.Arg685Cys	p.R685C	ENST00000261799	NM_002609.3	685	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	98	355	0	ENST00000257430.4:c.4128del	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/ta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	77	245	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175250	112175250	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	126	367	0	ENST00000257430.4:c.3959del	p.Val1320GlyfsTer95	p.V1320Gfs*95	ENST00000257430	NM_000038.5	1320	gTg/gg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29107914	29107914	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201923		P-0080497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	88	306	0	ENST00000328354.6:c.775G>A	p.Gly259Ser	p.G259S	ENST00000328354	NM_007194.3	259	Ggt/Agt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372281	55372281	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0080497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	105	477	0	ENST00000297316.4:c.971A>C	p.Gln324Pro	p.Q324P	ENST00000297316	NM_022454.3	324	cAg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0080499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	173	395	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	111	364	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112173299	112173299	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0080499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	181	346	0	ENST00000257430.4:c.2008A>T	p.Lys670Ter	p.K670*	ENST00000257430	NM_000038.5	670	Aaa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0080499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	135	411	0	ENST00000342988.3:c.988G>T	p.Glu330Ter	p.E330*	ENST00000342988	NM_005359.5	330	Gaa/Taa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737431	145737431	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778646		P-0080499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	27	489	0	ENST00000428558.2:c.3256G>A	p.Gly1086Arg	p.G1086R	ENST00000428558	NM_004260.3	1086	Ggg/Agg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190747	11190747	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759603938		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	125	426	1	ENST00000361445.4:c.5452C>T	p.Arg1818Cys	p.R1818C	ENST00000361445	NM_004958.3	1818	Cgt/Tgt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11199365	11199365	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587777895		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	57	292	0	ENST00000361445.4:c.5126G>A	p.Arg1709His	p.R1709H	ENST00000361445	NM_004958.3	1709	cGc/cAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11319406	11319406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149221273		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	88	366	0	ENST00000361445.4:c.61G>A	p.Val21Ile	p.V21I	ENST00000361445	NM_004958.3	21	Gtc/Atc																																																																															
MAD2L2	10459	MSKCC	GRCh37	1	11735730	11735730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	53	371	0	ENST00000235310.3:c.486G>T	p.Lys162Asn	p.K162N	ENST00000235310		162	aaG/aaT																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120461161	120461161	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	91	284	1	ENST00000256646.2:c.5797C>T	p.Arg1933Ter	p.R1933*	ENST00000256646	NM_024408.3	1933	Cga/Tga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465333	120465333	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs891328437		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	104	411	0	ENST00000256646.2:c.4928C>T	p.Thr1643Met	p.T1643M	ENST00000256646	NM_024408.3	1643	aCg/aTg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936018	150936018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	90	317	0	ENST00000271640.5:c.3470G>A	p.Arg1157His	p.R1157H	ENST00000271640	NM_001145415.1	1157	cGt/cAt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254677	16254677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	97	303	0	ENST00000375759.3:c.1942C>T	p.Arg648Trp	p.R648W	ENST00000375759	NM_015001.2	648	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256144	16256144	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138355680		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	112	383	0	ENST00000375759.3:c.3409C>T	p.Arg1137Cys	p.R1137C	ENST00000375759	NM_015001.2	1137	Cgt/Tgt																																																																															
NUF2	83540	MSKCC	GRCh37	1	163295897	163295897	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770685564		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	76	266	0	ENST00000271452.3:c.56G>A	p.Arg19His	p.R19H	ENST00000271452	NM_145697.2	19	cGc/cAc																																																																															
NADK	65220	MSKCC	GRCh37	1	1687714	1687714	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1265614547		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	90	361	1	ENST00000341426.5:c.568G>A	p.Ala190Thr	p.A190T	ENST00000341426	NM_023018.4	190	Gct/Act																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206647813	206647813	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs554685342		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	80	302	0	ENST00000367120.3:c.227C>T	p.Thr76Met	p.T76M	ENST00000367120	NM_014002.3	76	aCg/aTg																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230459239	230459239	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1190458413		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	82	349	0	ENST00000525115.1:c.1300C>T	p.Arg434Trp	p.R434W	ENST00000525115		434	Cgg/Tgg																																																																															
FH	2271	MSKCC	GRCh37	1	241680520	241680520	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1277364872		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	81	256	0	ENST00000366560.3:c.229A>G	p.Met77Val	p.M77V	ENST00000366560	NM_000143.3	77	Atg/Gtg																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246518359	246518359	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746219350		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	86	294	0	ENST00000388985.4:c.202G>A	p.Ala68Thr	p.A68T	ENST00000388985		68	Gcc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097631	27097631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	118	361	0	ENST00000324856.7:c.3220C>T	p.Arg1074Trp	p.R1074W	ENST00000324856	NM_006015.4	1074	Cgg/Tgg																																																																															
STK40	83931	MSKCC	GRCh37	1	36820959	36820959	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139999382		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	94	363	0	ENST00000373129.3:c.418G>A	p.Val140Ile	p.V140I	ENST00000373129	NM_032017.1	140	Gtc/Atc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939086	36939086	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372288734		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	103	440	0	ENST00000361632.4:c.623C>T	p.Ala208Val	p.A208V	ENST00000361632		208	gCg/gTg																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073301	8073301	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781338553		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	105	308	0	ENST00000377482.5:c.1358G>A	p.Arg453His	p.R453H	ENST00000377482	NM_018948.3	453	cGt/cAt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781851	9781851	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746943903		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	39	310	0	ENST00000377346.4:c.1988G>A	p.Arg663His	p.R663H	ENST00000377346	NM_005026.3	663	cGc/cAc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104309851	104309851	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763813479		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	68	295	0	ENST00000369902.3:c.442G>A	p.Val148Met	p.V148M	ENST00000369902	NM_016169.3	148	Gtg/Atg																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112771482	112771482	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1208150244		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	121	311	0	ENST00000369452.4:c.1655C>T	p.Pro552Leu	p.P552L	ENST00000369452	NM_007373.3	552	cCa/cTa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920423	114920423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148050954		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	103	301	0	ENST00000543371.1:c.1364G>A	p.Arg455Gln	p.R455Q	ENST00000543371	NM_001198531.1	455	cGa/cAa																																																																															
RET	5979	MSKCC	GRCh37	10	43601840	43601840	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758159521		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	73	413	0	ENST00000355710.3:c.884C>T	p.Thr295Met	p.T295M	ENST00000355710	NM_020975.4	295	aCg/aTg																																																																															
RET	5979	MSKCC	GRCh37	10	43601998	43601998	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1183365192		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	69	370	0	ENST00000355710.3:c.1042C>T	p.Arg348Trp	p.R348W	ENST00000355710	NM_020975.4	348	Cgg/Tgg																																																																															
RET	5979	MSKCC	GRCh37	10	43615155	43615155	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	68	383	0	ENST00000355710.3:c.2569C>T	p.Gln857Ter	p.Q857*	ENST00000355710	NM_020975.4	857	Cag/Tag																																																																															
TET1	80312	MSKCC	GRCh37	10	70404809	70404809	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	79	294	0	ENST00000373644.4:c.2328del	p.Lys776AsnfsTer19	p.K776Nfs*19	ENST00000373644	NM_030625.2	775	Aaa/aa																																																																															
TET1	80312	MSKCC	GRCh37	10	70446339	70446339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374692138		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	110	402	0	ENST00000373644.4:c.5279C>T	p.Ala1760Val	p.A1760V	ENST00000373644	NM_030625.2	1760	gCg/gTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100432	8100432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	76	509	0	ENST00000346208.3:c.406G>A	p.Ala136Thr	p.A136T	ENST00000346208		136	Gcc/Acc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102201966	102201966	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	119	218	0	ENST00000263464.3:c.1318G>T	p.Glu440Ter	p.E440*	ENST00000263464	NM_001165.4	440	Gaa/Taa																																																																															
CTR9	9646	MSKCC	GRCh37	11	10794725	10794725	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1402421753		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	108	341	0	ENST00000361367.2:c.2632C>T	p.Arg878Trp	p.R878W	ENST00000361367	NM_014633.3	878	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108160494	108160494	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369903995		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	70	266	0	ENST00000278616.4:c.4402G>A	p.Val1468Ile	p.V1468I	ENST00000278616	NM_000051.3	1468	Gtt/Att																																																																															
ATM	472	MSKCC	GRCh37	11	108199820	108199820	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	112	264	0	ENST00000278616.4:c.7162C>A	p.Leu2388Ile	p.L2388I	ENST00000278616	NM_000051.3	2388	Ctc/Atc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343828	118343828	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	141	413	0	ENST00000534358.1:c.1954C>T	p.Arg652Ter	p.R652*	ENST00000534358	NM_005933.3	652	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344141	118344141	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	131	413	0	ENST00000534358.1:c.2267G>T	p.Arg756Met	p.R756M	ENST00000534358	NM_005933.3	756	aGg/aTg																																																																															
CBL	867	MSKCC	GRCh37	11	119155718	119155718	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	116	362	0	ENST00000264033.4:c.1471G>T	p.Ala491Ser	p.A491S	ENST00000264033	NM_005188.3	491	Gct/Tct																																																																															
CBL	867	MSKCC	GRCh37	11	119156010	119156010	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs779425249		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	135	464	0	ENST00000264033.4:c.1675C>T	p.Arg559Ter	p.R559*	ENST00000264033	NM_005188.3	559	Cga/Tga																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316075	14316075	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs566703225		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	32	114	0	ENST00000256196.4:c.350G>A	p.Arg117His	p.R117H	ENST00000256196		117	cGt/cAt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742823	17742823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	56	300	0	ENST00000250003.3:c.731C>T	p.Ala244Val	p.A244V	ENST00000250003	NM_002478.4	244	gCg/gTg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742951	17742951	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1332082680		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	46	367	0	ENST00000250003.3:c.859G>A	p.Ala287Thr	p.A287T	ENST00000250003	NM_002478.4	287	Gcc/Acc																																																																															
WT1	7490	MSKCC	GRCh37	11	32421541	32421541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	115	372	0	ENST00000332351.3:c.1051G>A	p.Gly351Arg	p.G351R	ENST00000332351	NM_024426.4	351	Gga/Aga																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138055	64138055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	57	412	0	ENST00000334205.4:c.1978G>A	p.Ala660Thr	p.A660T	ENST00000334205	NM_003942.2	660	Gcc/Acc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138797	64138797	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs902255820		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	59	263	0	ENST00000334205.4:c.2164G>A	p.Val722Met	p.V722M	ENST00000334205	NM_003942.2	722	Gtg/Atg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202134	67202134	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776604371		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	65	375	0	ENST00000312629.5:c.1237C>T	p.Arg413Cys	p.R413C	ENST00000312629	NM_003952.2	413	Cgc/Tgc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939260	71939260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	64	403	1	ENST00000298229.2:c.209G>A	p.Arg70His	p.R70H	ENST00000298229	NM_001567.3	70	cGc/cAc																																																																															
RAD52	5893	MSKCC	GRCh37	12	1023246	1023246	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs184776294		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	80	348	0	ENST00000358495.3:c.1009G>A	p.Asp337Asn	p.D337N	ENST00000358495	NM_134424.2	337	Gat/Aat																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885580	111885580	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs74163667		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	78	349	1	ENST00000341259.2:c.1357G>A	p.Ala453Thr	p.A453T	ENST00000341259	NM_005475.2	453	Gcc/Acc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112888199	112888199	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121918454		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	53	290	0	ENST00000351677.2:c.215C>T	p.Ala72Val	p.A72V	ENST00000351677	NM_002834.3	72	gCc/gTc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109962	115109962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	84	410	0	ENST00000257566.3:c.1916G>A	p.Arg639His	p.R639H	ENST00000257566	NM_016569.3	639	cGc/cAc																																																																															
RAB35	11021	MSKCC	GRCh37	12	120541651	120541651	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752816549		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	94	402	0	ENST00000229340.5:c.206G>A	p.Arg69His	p.R69H	ENST00000229340	NM_006861.6	69	cGc/cAc																																																																															
MSI1	4440	MSKCC	GRCh37	12	120791138	120791138	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs748263600		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	86	404	1	ENST00000257552.2:c.697A>G	p.Thr233Ala	p.T233A	ENST00000257552	NM_002442.3	233	Aca/Gca																																																																															
POLE	5426	MSKCC	GRCh37	12	133252729	133252729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	70	312	0	ENST00000320574.5:c.971C>T	p.Pro324Leu	p.P324L	ENST00000320574	NM_006231.2	324	cCc/cTc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18576963	18576963	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778117246		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	96	301	0	ENST00000266497.5:c.2371C>T	p.Arg791Cys	p.R791C	ENST00000266497		791	Cgt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434444	49434444	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373234419		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	110	470	0	ENST00000301067.7:c.7109G>A	p.Arg2370His	p.R2370H	ENST00000301067	NM_003482.3	2370	cGc/cAc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482546	56482546	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	105	350	0	ENST00000267101.3:c.1003G>T	p.Gly335Cys	p.G335C	ENST00000267101	NM_001982.3	335	Ggc/Tgc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435406	110435406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35927012		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	74	501	0	ENST00000375856.3:c.2995G>A	p.Val999Met	p.V999M	ENST00000375856	NM_003749.2	999	Gtg/Atg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972336	32972336	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	125	301	0	ENST00000380152.3:c.9686C>A	p.Pro3229His	p.P3229H	ENST00000380152		3229	cCt/cAt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346926	73346926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	98	252	0	ENST00000377767.4:c.1291G>A	p.Glu431Lys	p.E431K	ENST00000377767	NM_014953.3	431	Gaa/Aaa																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871865	35871865	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373228608		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	127	405	0	ENST00000216797.5:c.641C>T	p.Pro214Leu	p.P214L	ENST00000216797	NM_020529.2	214	cCc/cTc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569793	95569793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	107	375	0	ENST00000343455.3:c.3940C>T	p.Arg1314Trp	p.R1314W	ENST00000343455	NM_177438.2	1314	Cgg/Tgg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95571498	95571498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	25	303	0	ENST00000343455.3:c.3179G>A	p.Arg1060His	p.R1060H	ENST00000343455	NM_177438.2	1060	cGc/cAc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643719	38643719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	95	368	0	ENST00000299084.4:c.1189G>A	p.Asp397Asn	p.D397N	ENST00000299084	NM_152594.2	397	Gac/Aac																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724595	43724595	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	107	372	0	ENST00000382044.4:c.3472G>T	p.Gly1158Ter	p.G1158*	ENST00000382044	NM_001141980.1	1158	Gga/Tga																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457330	67457330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	128	471	0	ENST00000327367.4:c.304G>A	p.Glu102Lys	p.E102K	ENST00000327367	NM_005902.3	102	Gag/Aag																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457701	67457701	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768050588		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	108	423	0	ENST00000327367.4:c.511G>A	p.Glu171Lys	p.E171K	ENST00000327367	NM_005902.3	171	Gag/Aag																																																																															
CD276	80381	MSKCC	GRCh37	15	73994791	73994791	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375871029		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	60	362	0	ENST00000318443.5:c.275G>A	p.Arg92His	p.R92H	ENST00000318443	NM_001024736.1	92	cGc/cAc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420216	88420216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	70	355	0	ENST00000360948.2:c.2470C>T	p.Leu824Phe	p.L824F	ENST00000360948	NM_001012338.2	824	Ctc/Ttc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631620	90631620	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745751309		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	93	412	1	ENST00000330062.3:c.649G>A	p.Val217Met	p.V217M	ENST00000330062	NM_002168.2	217	Gtg/Atg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500606	99500606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs909142461		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	60	353	0	ENST00000268035.6:c.4039G>A	p.Ala1347Thr	p.A1347T	ENST00000268035	NM_000875.3	1347	Gcc/Acc																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2094723	2094723	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs374489979		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	81	371	0	ENST00000219066.1:c.457C>T	p.Arg153Ter	p.R153*	ENST00000219066	NM_002528.5	153	Cga/Tga																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646257	23646257	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142103232		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	91	321	1	ENST00000261584.4:c.1610C>T	p.Ser537Leu	p.S537L	ENST00000261584	NM_024675.3	537	tCg/tTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900813	3900813	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756802946		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	77	370	0	ENST00000262367.5:c.283G>A	p.Val95Met	p.V95M	ENST00000262367	NM_004380.2	95	Gtg/Atg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782296	56782296	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760107958		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	80	282	0	ENST00000308159.5:c.137G>A	p.Arg46His	p.R46H	ENST00000308159	NM_014669.4	46	cGt/cAt																																																																															
NUP93	9688	MSKCC	GRCh37	16	56852643	56852643	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs966758586		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	86	268	0	ENST00000308159.5:c.557C>T	p.Ala186Val	p.A186V	ENST00000308159	NM_014669.4	186	gCg/gTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984678	72984678	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1355742857		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	85	420	0	ENST00000268489.5:c.2906G>A	p.Arg969His	p.R969H	ENST00000268489	NM_006885.3	969	cGc/cAc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81965174	81965174	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199703276		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	84	376	0	ENST00000359376.3:c.2654C>T	p.Pro885Leu	p.P885L	ENST00000359376	NM_002661.3	885	cCg/cTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348508	89348508	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148065431		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	104	391	0	ENST00000301030.4:c.4442C>T	p.Ala1481Val	p.A1481V	ENST00000301030	NM_001256183.1	1481	gCg/gTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348820	89348820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	93	432	0	ENST00000301030.4:c.4130G>A	p.Gly1377Asp	p.G1377D	ENST00000301030	NM_001256183.1	1377	gGc/gAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350734	89350734	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146294483		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	112	347	0	ENST00000301030.4:c.2216C>T	p.Ser739Leu	p.S739L	ENST00000301030	NM_001256183.1	739	tCg/tTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89352037	89352037	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138353708		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	92	334	0	ENST00000301030.4:c.913G>A	p.Ala305Thr	p.A305T	ENST00000301030	NM_001256183.1	305	Gca/Aca																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836624	89836624	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs556748657		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	79	368	0	ENST00000389301.3:c.2266C>T	p.Arg756Cys	p.R756C	ENST00000389301	NM_000135.2	756	Cgt/Tgt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15950397	15950397	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs190623603		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	81	312	0	ENST00000268712.3:c.6547C>T	p.Arg2183Cys	p.R2183C	ENST00000268712	NM_006311.3	2183	Cgc/Tgc																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690267	33690267	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756128320		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	122	393	0	ENST00000308377.4:c.560C>T	p.Ser187Leu	p.S187L	ENST00000308377	NM_152270.3	187	tCg/tTg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37649059	37649059	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1488101050		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	98	267	0	ENST00000447079.4:c.2164C>T	p.Arg722Cys	p.R722C	ENST00000447079	NM_015083.1	722	Cgc/Tgc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866710	37866710	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1258412021		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	83	404	0	ENST00000269571.5:c.877G>A	p.Ala293Thr	p.A293T	ENST00000269571		293	Gcc/Acc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	88	378	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
RARA	5914	MSKCC	GRCh37	17	38510717	38510717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	67	320	0	ENST00000254066.5:c.971C>T	p.Ala324Val	p.A324V	ENST00000254066	NM_000964.3	324	gCg/gTg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40457661	40457661	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1307657759		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	55	277	0	ENST00000345506.4:c.1414G>A	p.Gly472Ser	p.G472S	ENST00000345506	NM_003152.3	472	Ggc/Agc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41251812	41251812	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782747		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	83	263	0	ENST00000357654.3:c.527C>T	p.Thr176Met	p.T176M	ENST00000357654	NM_007294.3	176	aCg/aTg																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770007	56770007	+	start_lost	Translation_Start_Site	SNP	G	G	A	rs769053886		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	48	268	0	ENST00000337432.4:c.3G>A	p.Met1?	p.M1?	ENST00000337432	NM_058216.2	1	atG/atA																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59821927	59821927	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	82	252	0	ENST00000259008.2:c.2123G>T	p.Trp708Leu	p.W708L	ENST00000259008	NM_032043.2	708	tGg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	93	363	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78831665	78831665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1000105279		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	52	343	0	ENST00000306801.3:c.1474G>A	p.Val492Ile	p.V492I	ENST00000306801	NM_020761.2	492	Gtt/Att																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110190	8110190	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761178783		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	131	414	0	ENST00000585124.1:c.415C>T	p.Arg139Cys	p.R139C	ENST00000585124	NM_004217.3	139	Cgt/Tgt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39609313	39609313	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760479037		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	75	264	0	ENST00000262039.4:c.1615C>T	p.Arg539Cys	p.R539C	ENST00000262039	NM_002647.2	539	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584533	48584533	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	92	365	0	ENST00000342988.3:c.706G>T	p.Gly236Ter	p.G236*	ENST00000342988	NM_005359.5	236	Gga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	107	328	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56390435	56390435	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757096789		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	85	232	0	ENST00000348428.3:c.1174C>T	p.Arg392Cys	p.R392C	ENST00000348428	NM_006785.3	392	Cgt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207045	1207045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	93	368	0	ENST00000326873.7:c.133C>T	p.Leu45Phe	p.L45F	ENST00000326873	NM_000455.4	45	Ctc/Ttc																																																																															
CALR	811	MSKCC	GRCh37	19	13050898	13050898	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs765257046		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	20	332	0	ENST00000316448.5:c.429G>T	p.Lys143Asn	p.K143N	ENST00000316448	NM_004343.3	143	aaG/aaT																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272375	15272375	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747559029		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	71	441	0	ENST00000263388.2:c.6064C>T	p.Arg2022Cys	p.R2022C	ENST00000263388	NM_000435.2	2022	Cgc/Tgc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354008	15354008	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			72	17	137	0	ENST00000263377.2:c.2872del	p.Leu958CysfsTer110	p.L958Cfs*110	ENST00000263377	NM_058243.2	958	Ctg/tg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366129	15366129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1468704458		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	56	300	0	ENST00000263377.2:c.2026C>T	p.Arg676Trp	p.R676W	ENST00000263377	NM_058243.2	676	Cgg/Tgg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376433	15376433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	67	308	0	ENST00000263377.2:c.581C>T	p.Ser194Phe	p.S194F	ENST00000263377	NM_058243.2	194	tCc/tTc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622058	1622058	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753558041		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	39	342	1	ENST00000344749.5:c.817C>T	p.Arg273Cys	p.R273C	ENST00000344749	NM_001136139.2	273	Cgt/Tgt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943489	17943489	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140837014		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	15	395	0	ENST00000458235.1:c.2519G>A	p.Arg840His	p.R840H	ENST00000458235	NM_000215.3	840	cGc/cAc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18276985	18276985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	78	348	0	ENST00000222254.8:c.1432C>T	p.Arg478Cys	p.R478C	ENST00000222254	NM_005027.3	478	Cgt/Tgt																																																																															
GNA11	2767	MSKCC	GRCh37	19	3119016	3119016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	64	430	0	ENST00000078429.4:c.700G>A	p.Glu234Lys	p.E234K	ENST00000078429	NM_002067.2	234	Gaa/Aaa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214821	36214821	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	62	347	1	ENST00000222270.7:c.3247C>T	p.Arg1083Ter	p.R1083*	ENST00000222270	NM_014727.1	1083	Cga/Tga																																																																															
AXL	558	MSKCC	GRCh37	19	41762431	41762431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	74	383	0	ENST00000301178.4:c.2111G>A	p.Arg704His	p.R704H	ENST00000301178	NM_021913.4	704	cGc/cAc																																																																															
ERF	2077	MSKCC	GRCh37	19	42754077	42754077	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1381343253		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	86	319	0	ENST00000222329.4:c.275G>A	p.Arg92His	p.R92H	ENST00000222329	NM_006494.2	92	cGc/cAc																																																																															
ERF	2077	MSKCC	GRCh37	19	42754483	42754483	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs765295141		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	80	339	0	ENST00000222329.4:c.257G>A	p.Arg86His	p.R86H	ENST00000222329	NM_006494.2	86	cGc/cAc																																																																															
CIC	23152	MSKCC	GRCh37	19	42797005	42797005	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148703020		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	90	446	0	ENST00000575354.2:c.3463G>A	p.Ala1155Thr	p.A1155T	ENST00000575354	NM_015125.3	1155	Gcc/Acc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424780	47424780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	126	377	0	ENST00000404338.3:c.2848G>A	p.Ala950Thr	p.A950T	ENST00000404338	NM_004491.4	950	Gct/Act																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214604	5214604	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116515629		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	63	382	0	ENST00000357368.4:c.4462G>A	p.Val1488Ile	p.V1488I	ENST00000357368	NM_002850.3	1488	Gtc/Atc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5215357	5215357	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1440179947		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	75	422	0	ENST00000357368.4:c.4261C>T	p.Arg1421Cys	p.R1421C	ENST00000357368	NM_002850.3	1421	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223137	5223137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747248153		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	59	434	0	ENST00000357368.4:c.2666G>A	p.Arg889His	p.R889H	ENST00000357368	NM_002850.3	889	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223203	5223203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1416280955		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	48	414	1	ENST00000357368.4:c.2600G>A	p.Arg867His	p.R867H	ENST00000357368	NM_002850.3	867	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245810	5245810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	59	354	0	ENST00000357368.4:c.965C>T	p.Ala322Val	p.A322V	ENST00000357368	NM_002850.3	322	gCg/gTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7168022	7168022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	73	332	0	ENST00000302850.5:c.1567G>A	p.Asp523Asn	p.D523N	ENST00000302850	NM_000208.2	523	Gac/Aac																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128018917	128018917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	72	275	0	ENST00000285398.2:c.1951G>A	p.Val651Ile	p.V651I	ENST00000285398	NM_000122.1	651	Gtt/Att																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873229	136873229	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756830956		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	97	372	0	ENST00000241393.3:c.269C>T	p.Thr90Met	p.T90M	ENST00000241393	NM_003467.2	90	aCg/aTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202150001	202150001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	117	366	0	ENST00000358485.4:c.1442T>C	p.Ile481Thr	p.I481T	ENST00000358485	NM_001080125.1	481	aTc/aCc																																																																															
IDH1	3417	MSKCC	GRCh37	2	209103816	209103816	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766246232		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	87	266	0	ENST00000345146.2:c.1133C>T	p.Ala378Val	p.A378V	ENST00000345146	NM_005896.2	378	gCt/gTt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661066	227661066	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs980309168		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	111	437	0	ENST00000305123.5:c.2389C>T	p.Arg797Cys	p.R797C	ENST00000305123	NM_005544.2	797	Cgc/Tgc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464454	25464454	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1183198167		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	67	328	0	ENST00000264709.3:c.2059G>A	p.Val687Ile	p.V687I	ENST00000264709	NM_175629.2	687	Gtc/Atc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25468931	25468931	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs764944380		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	74	320	0	ENST00000264709.3:c.1432C>T	p.Arg478Trp	p.R478W	ENST00000264709	NM_175629.2	478	Cgg/Tgg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505312	25505312	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs767055283		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	75	386	0	ENST00000264709.3:c.446C>T	p.Ala149Val	p.A149V	ENST00000264709	NM_175629.2	149	gCg/gTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26022274	26022274	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	102	309	0	ENST00000435504.4:c.383del	p.Lys128ArgfsTer39	p.K128Rfs*39	ENST00000435504		128	aAg/ag																																																																															
CENPA	1058	MSKCC	GRCh37	2	27015023	27015023	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202063570		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	51	306	0	ENST00000335756.4:c.125G>A	p.Arg42Gln	p.R42Q	ENST00000335756	NM_001809.3	42	cGg/cAg																																																																															
ALK	238	MSKCC	GRCh37	2	29436928	29436928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	85	336	0	ENST00000389048.3:c.3665C>T	p.Ala1222Val	p.A1222V	ENST00000389048	NM_004304.4	1222	gCc/gTc																																																																															
ALK	238	MSKCC	GRCh37	2	29754886	29754886	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759426382		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	85	398	0	ENST00000389048.3:c.1049C>T	p.Ser350Leu	p.S350L	ENST00000389048	NM_004304.4	350	tCg/tTg																																																																															
ALK	238	MSKCC	GRCh37	2	29917793	29917793	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149145987		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	78	305	0	ENST00000389048.3:c.875G>A	p.Arg292His	p.R292H	ENST00000389048	NM_004304.4	292	cGc/cAc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026605	48026605	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779212		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	88	345	0	ENST00000234420.5:c.1483C>T	p.Arg495Ter	p.R495*	ENST00000234420	NM_000179.2	495	Cga/Tga																																																																															
MSH6	2956	MSKCC	GRCh37	2	48028048	48028048	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782386		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	96	352	0	ENST00000234420.5:c.2926C>T	p.Arg976Cys	p.R976C	ENST00000234420	NM_000179.2	976	Cgt/Tgt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	91	386	3	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	71	198	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96920652	96920652	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767739392		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	79	311	0	ENST00000258439.3:c.328G>A	p.Ala110Thr	p.A110T	ENST00000258439	NM_001193304.2	110	Gct/Act																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99160395	99160395	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1262643000		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	91	356	0	ENST00000074304.5:c.874C>T	p.Arg292Cys	p.R292C	ENST00000074304	NM_001134224.1	292	Cgc/Tgc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99181121	99181121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749167994		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	86	359	0	ENST00000074304.5:c.2062G>A	p.Gly688Ser	p.G688S	ENST00000074304	NM_001134224.1	688	Ggc/Agc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021646	31021646	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1299423705		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	96	385	0	ENST00000375687.4:c.1645C>T	p.Arg549Cys	p.R549C	ENST00000375687	NM_015338.5	549	Cgt/Tgt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46255889	46255889	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	59	187	0	ENST00000371998.3:c.501G>T	p.Lys167Asn	p.K167N	ENST00000371998		167	aaG/aaT																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46267785	46267785	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756751050		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	81	310	0	ENST00000371998.3:c.2546G>A	p.Arg849His	p.R849H	ENST00000371998		849	cGt/cAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57478633	57478633	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1131691999		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	112	380	0	ENST00000371085.3:c.305C>T	p.Ala102Val	p.A102V	ENST00000371085	NM_000516.4	102	gCg/gTg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62309680	62309680	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs145845927		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	61	339	0	ENST00000482936.1:c.1018G>A	p.Gly340Ser	p.G340S	ENST00000482936		340	Ggt/Agt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560913	9560913	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs559720359		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	93	400	0	ENST00000353224.5:c.869C>T	p.Ser290Leu	p.S290L	ENST00000353224	NM_177990.2	290	tCg/tTg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561268	9561268	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749763005		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	79	365	0	ENST00000353224.5:c.514G>A	p.Val172Ile	p.V172I	ENST00000353224	NM_177990.2	172	Gta/Ata																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624810	9624810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	79	318	0	ENST00000353224.5:c.167C>T	p.Pro56Leu	p.P56L	ENST00000353224	NM_177990.2	56	cCt/cTt																																																																															
ERG	2078	MSKCC	GRCh37	21	39817460	39817460	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774083516		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	70	383	0	ENST00000288319.7:c.103G>A	p.Ala35Thr	p.A35T	ENST00000288319	NM_182918.3	35	Gcg/Acg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42852526	42852526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779200981		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	87	336	0	ENST00000398585.3:c.560G>A	p.Arg187His	p.R187H	ENST00000398585	NM_001135099.1	187	cGc/cAc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	26	248	0	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt																																																																															
NF2	4771	MSKCC	GRCh37	22	30069382	30069382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	89	363	0	ENST00000338641.4:c.1247C>T	p.Ala416Val	p.A416V	ENST00000338641	NM_000268.3	416	gCg/gTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41572357	41572357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	101	373	0	ENST00000263253.7:c.4886C>T	p.Ala1629Val	p.A1629V	ENST00000263253	NM_001429.3	1629	gCg/gTg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119582332	119582332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	128	302	0	ENST00000316626.5:c.1069C>T	p.Arg357Trp	p.R357W	ENST00000316626		357	Cgg/Tgg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119666143	119666143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769576748		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	78	248	0	ENST00000316626.5:c.338G>A	p.Arg113His	p.R113H	ENST00000316626		113	cGt/cAt																																																																															
RAF1	5894	MSKCC	GRCh37	3	12647733	12647733	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761703202		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	94	301	0	ENST00000251849.4:c.647G>A	p.Arg216His	p.R216H	ENST00000251849	NM_002880.3	216	cGt/cAt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134514507	134514507	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs372758942		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	41	260	0	ENST00000398015.3:c.34G>T	p.Ala12Ser	p.A12S	ENST00000398015	NM_004441.4	12	Gca/Tca																																																																															
ATR	545	MSKCC	GRCh37	3	142277508	142277508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759350161		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	79	216	0	ENST00000350721.4:c.1843G>A	p.Ala615Thr	p.A615T	ENST00000350721	NM_001184.3	615	Gct/Act																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928310	178928310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	111	279	0	ENST00000263967.3:c.1496C>T	p.Ser499Phe	p.S499F	ENST00000263967	NM_006218.2	499	tCt/tTt																																																																															
BCL6	604	MSKCC	GRCh37	3	187440334	187440334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	80	318	0	ENST00000232014.4:c.2033G>A	p.Arg678His	p.R678H	ENST00000232014	NM_001130845.1	678	cGc/cAc																																																																															
TP63	8626	MSKCC	GRCh37	3	189604292	189604292	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777306829		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	126	355	0	ENST00000264731.3:c.1459C>T	p.Arg487Cys	p.R487C	ENST00000264731	NM_003722.4	487	Cgc/Tgc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47158131	47158131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	80	222	0	ENST00000409792.3:c.4568G>A	p.Arg1523His	p.R1523H	ENST00000409792	NM_014159.6	1523	cGt/cAt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436344	52436344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765539314		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	77	409	0	ENST00000460680.1:c.2150G>A	p.Arg717Gln	p.R717Q	ENST00000460680	NM_004656.3	717	cGg/cAg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437675	52437675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	95	449	0	ENST00000460680.1:c.1486G>A	p.Ala496Thr	p.A496T	ENST00000460680	NM_004656.3	496	Gcc/Acc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52595852	52595852	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1276256973		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	120	350	0	ENST00000394830.3:c.4063G>A	p.Gly1355Arg	p.G1355R	ENST00000394830	NM_018313.4	1355	Ggg/Agg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026105	71026105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	69	260	0	ENST00000318789.4:c.1517C>T	p.Ala506Val	p.A506V	ENST00000318789	NM_032682.5	506	gCg/gTg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143045755	143045755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781219504		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	47	274	0	ENST00000262992.4:c.1879G>A	p.Val627Ile	p.V627I	ENST00000262992	NM_001101669.1	627	Gtc/Atc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	103	276	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510339	187510339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs192910004		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	65	238	0	ENST00000441802.2:c.13174G>A	p.Val4392Ile	p.V4392I	ENST00000441802	NM_005245.3	4392	Gtt/Att																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902658	1902658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761663126		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	118	389	0	ENST00000382895.3:c.277G>A	p.Ala93Thr	p.A93T	ENST00000382895	NM_133330.2	93	Gca/Aca																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155052	55155052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	75	427	0	ENST00000257290.5:c.2761G>A	p.Ala921Thr	p.A921T	ENST00000257290	NM_006206.4	921	Gct/Act																																																																															
KIT	3815	MSKCC	GRCh37	4	55602746	55602746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	76	284	0	ENST00000288135.5:c.2567G>A	p.Gly856Glu	p.G856E	ENST00000288135	NM_000222.2	856	gGg/gAg																																																																															
KDR	3791	MSKCC	GRCh37	4	55970953	55970953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	69	301	0	ENST00000263923.4:c.1844C>T	p.Thr615Ile	p.T615I	ENST00000263923	NM_002253.2	615	aCc/aTc																																																																															
KDR	3791	MSKCC	GRCh37	4	55984940	55984940	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	67	268	0	ENST00000263923.4:c.189G>A	p.Trp63Ter	p.W63*	ENST00000263923	NM_002253.2	63	tgG/tgA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535333	66535333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	78	370	0	ENST00000273854.3:c.128G>A	p.Cys43Tyr	p.C43Y	ENST00000273854	NM_004439.5	43	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	84	230	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	78	306	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
TERT	7015	MSKCC	GRCh37	5	1253878	1253878	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764841621		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	67	382	0	ENST00000310581.5:c.3364G>A	p.Ala1122Thr	p.A1122T	ENST00000310581	NM_198253.2	1122	Gca/Aca																																																																															
TERT	7015	MSKCC	GRCh37	5	1264586	1264586	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs547377569		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	69	425	0	ENST00000310581.5:c.2776G>A	p.Gly926Ser	p.G926S	ENST00000310581	NM_198253.2	926	Ggc/Agc																																																																															
TERT	7015	MSKCC	GRCh37	5	1271252	1271252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	63	302	0	ENST00000310581.5:c.2450C>T	p.Ala817Val	p.A817V	ENST00000310581	NM_198253.2	817	gCc/gTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1282613	1282613	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886039438		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	76	415	0	ENST00000310581.5:c.1700C>T	p.Thr567Met	p.T567M	ENST00000310581	NM_198253.2	567	aCg/aTg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131976422	131976422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	98	340	0	ENST00000265335.6:c.3677G>A	p.Gly1226Asp	p.G1226D	ENST00000265335		1226	gGc/gAc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435874	149435874	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs690016564		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	66	341	0	ENST00000286301.3:c.2350G>A	p.Val784Met	p.V784M	ENST00000286301	NM_005211.3	784	Gtg/Atg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513239	149513239	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs34586048		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	81	398	0	ENST00000261799.4:c.844G>A	p.Glu282Lys	p.E282K	ENST00000261799	NM_002609.3	282	Gag/Aag																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149514414	149514414	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759684681		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	83	417	0	ENST00000261799.4:c.530G>A	p.Arg177His	p.R177H	ENST00000261799	NM_002609.3	177	cGt/cAt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048231	180048231	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201884197		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	56	414	0	ENST00000261937.6:c.2042C>T	p.Thr681Met	p.T681M	ENST00000261937	NM_182925.4	681	aCg/aTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180049799	180049799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1408501130		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	56	364	0	ENST00000261937.6:c.1589C>T	p.Ala530Val	p.A530V	ENST00000261937	NM_182925.4	530	gCc/gTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053023	180053023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	63	442	1	ENST00000261937.6:c.1267del	p.Gln423ArgfsTer70	p.Q423Rfs*70	ENST00000261937	NM_182925.4	423	Cag/ag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31508765	31508765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	74	284	1	ENST00000344624.3:c.1550G>A	p.Arg517Gln	p.R517Q	ENST00000344624		517	cGa/cAa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38982108	38982108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778526085		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	113	283	0	ENST00000357387.3:c.614G>A	p.Arg205Gln	p.R205Q	ENST00000357387	NM_152756.3	205	cGa/cAa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672218	86672218	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370631681		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	92	280	0	ENST00000274376.6:c.2020C>T	p.Arg674Cys	p.R674C	ENST00000274376	NM_002890.2	674	Cgc/Tgc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117642471	117642471	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs750354810		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	115	381	0	ENST00000368508.3:c.5728C>T	p.Arg1910Ter	p.R1910*	ENST00000368508	NM_002944.2	1910	Cga/Tga																																																																															
PARK2	5071	MSKCC	GRCh37	6	161771219	161771219	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149953814		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	62	304	0	ENST00000366898.1:c.1310C>T	p.Pro437Leu	p.P437L	ENST00000366898	NM_004562.2	437	cCg/cTg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912355	29912355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	98	343	0	ENST00000376809.5:c.974C>T	p.Ala325Val	p.A325V	ENST00000376809	NM_002116.7	325	gCt/gTt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679941	30679941	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759438586		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	122	427	1	ENST00000376406.3:c.1778C>T	p.Ala593Val	p.A593V	ENST00000376406	NM_014641.2	593	gCa/gTa																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43749749	43749749	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776522854		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	90	356	0	ENST00000523873.1:c.602C>T	p.Thr201Met	p.T201M	ENST00000523873		201	aCg/aTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508490	106508490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	122	321	1	ENST00000359195.3:c.484G>A	p.Val162Ile	p.V162I	ENST00000359195	NM_002649.2	162	Gtc/Atc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509637	106509637	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766453335		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	187	380	0	ENST00000359195.3:c.1631G>A	p.Arg544Gln	p.R544Q	ENST00000359195	NM_002649.2	544	cGa/cAa																																																																															
POT1	25913	MSKCC	GRCh37	7	124503540	124503540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	72	281	0	ENST00000357628.3:c.410G>A	p.Arg137His	p.R137H	ENST00000357628	NM_015450.2	137	cGt/cAt																																																																															
SMO	6608	MSKCC	GRCh37	7	128852272	128852272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	142	370	0	ENST00000249373.3:c.2344G>T	p.Asp782Tyr	p.D782Y	ENST00000249373	NM_005631.4	782	Gat/Tat																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935508	13935508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs536563766		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	200	334	0	ENST00000405192.2:c.1348G>A	p.Glu450Lys	p.E450K	ENST00000405192	NM_001163147.1	450	Gaa/Aaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151842344	151842344	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs749571160		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	125	318	0	ENST00000262189.6:c.14068C>T	p.Arg4690Ter	p.R4690*	ENST00000262189	NM_170606.2	4690	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221711	55221711	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760101437		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	82	420	1	ENST00000275493.2:c.755G>A	p.Arg252His	p.R252H	ENST00000275493	NM_005228.3	252	cGc/cAc																																																																															
RAC1	5879	MSKCC	GRCh37	7	6442013	6442013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	24	114	0	ENST00000356142.4:c.572C>T	p.Ala191Val	p.A191V	ENST00000356142	NM_018890.3	191	gCg/gTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81350155	81350155	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758567520		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	76	213	0	ENST00000222390.5:c.1177C>T	p.Arg393Cys	p.R393C	ENST00000222390	NM_000601.4	393	Cgt/Tgt																																																																															
RAD21	5885	MSKCC	GRCh37	8	117859872	117859872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	91	303	0	ENST00000297338.2:c.1763C>T	p.Thr588Met	p.T588M	ENST00000297338	NM_006265.2	588	aCg/aTg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141551310	141551310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	88	429	0	ENST00000220592.5:c.1987C>T	p.Arg663Cys	p.R663C	ENST00000220592	NM_012154.3	663	Cgc/Tgc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38139044	38139044	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	117	235	0	ENST00000317025.8:c.3559C>T	p.Arg1187Ter	p.R1187*	ENST00000317025	NM_023034.1	1187	Cga/Tga																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205133	38205133	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs13034		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	103	329	0	ENST00000317025.8:c.557C>T	p.Thr186Met	p.T186M	ENST00000317025	NM_023034.1	186	aCg/aTg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271171	38271171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	59	279	0	ENST00000425967.3:c.2537C>T	p.Ala846Val	p.A846V	ENST00000425967	NM_001174067.1	846	gCc/gTc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964514	70964514	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	86	412	1	ENST00000276594.2:c.1514G>T	p.Arg505Leu	p.R505L	ENST00000276594	NM_024504.3	505	cGc/cTc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135798846	135798846	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs118203381		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	171	283	0	ENST00000298552.3:c.397G>A	p.Val133Ile	p.V133I	ENST00000298552	NM_001162426.1	133	Gtc/Atc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393579	139393579	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1181025067		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	81	472	0	ENST00000277541.6:c.6067G>A	p.Ala2023Thr	p.A2023T	ENST00000277541	NM_017617.3	2023	Gcc/Acc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395053	139395053	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1484525055		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	61	312	1	ENST00000277541.6:c.5885G>A	p.Arg1962His	p.R1962H	ENST00000277541	NM_017617.3	1962	cGc/cAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396889	139396889	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777962754		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	69	288	0	ENST00000277541.6:c.5219C>T	p.Ala1740Val	p.A1740V	ENST00000277541	NM_017617.3	1740	gCg/gTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971039	21971039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	80	368	0	ENST00000304494.5:c.319C>T	p.Arg107Cys	p.R107C	ENST00000304494	NM_000077.4	107	Cgc/Tgc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552822		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	86	379	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																															
TEK	7010	MSKCC	GRCh37	9	27202961	27202961	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745978641		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	119	358	0	ENST00000380036.4:c.2053G>A	p.Val685Ile	p.V685I	ENST00000380036	NM_000459.3	685	Gtt/Att																																																																															
JAK2	3717	MSKCC	GRCh37	9	5064922	5064922	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375678155		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	88	278	0	ENST00000381652.3:c.1096G>A	p.Val366Met	p.V366M	ENST00000381652	NM_004972.3	366	Gtg/Atg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090451	5090451	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774355597		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	60	168	1	ENST00000381652.3:c.2767C>T	p.Arg923Cys	p.R923C	ENST00000381652	NM_004972.3	923	Cgt/Tgt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485953	8485953	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763256154		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	94	412	0	ENST00000356435.5:c.2864C>T	p.Thr955Ile	p.T955I	ENST00000356435		955	aCc/aTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8733834	8733834	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1050031711		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	84	306	1	ENST00000356435.5:c.10G>A	p.Val4Ile	p.V4I	ENST00000356435		4	Gta/Ata																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570332	87570332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	105	465	0	ENST00000277120.3:c.2072G>A	p.Arg691His	p.R691H	ENST00000277120		691	cGc/cAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413060	63413060	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769613326		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			62	96	161	0	ENST00000330258.3:c.107C>T	p.Ala36Val	p.A36V	ENST00000330258	NM_152424.3	36	gCg/gTg																																																																															
AR	367	MSKCC	GRCh37	X	66765079	66765079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	58	171	0	ENST00000374690.3:c.91C>T	p.Arg31Cys	p.R31C	ENST00000374690	NM_000044.3	31	Cgc/Tgc																																																																															
MED12	9968	MSKCC	GRCh37	X	70353023	70353023	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			66	73	146	0	ENST00000374080.3:c.4578G>T	p.Lys1526Asn	p.K1526N	ENST00000374080		1526	aaG/aaT																																																																															
MED12	9968	MSKCC	GRCh37	X	70354667	70354667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			61	76	183	0	ENST00000374080.3:c.4832G>A	p.Arg1611His	p.R1611H	ENST00000374080		1611	cGt/cAt																																																																															
ATRX	546	MSKCC	GRCh37	X	76938784	76938784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	119	196	0	ENST00000373344.5:c.1964G>T	p.Arg655Ile	p.R655I	ENST00000373344	NM_000489.3	655	aGa/aTa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258678	115258678	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1482529842		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	75	252	0	ENST00000369535.4:c.104C>T	p.Thr35Ile	p.T35I	ENST00000369535	NM_002524.4	35	aCc/aTc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166292	118166292	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761103312		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	97	377	0	ENST00000369448.3:c.802C>T	p.Arg268Cys	p.R268C	ENST00000369448	NM_017709.3	268	Cgc/Tgc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458306	120458306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	110	515	0	ENST00000256646.2:c.7039C>A	p.Arg2347Ser	p.R2347S	ENST00000256646	NM_024408.3	2347	Cgt/Agt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468262	120468262	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760072707		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	84	401	0	ENST00000256646.2:c.4177C>T	p.Arg1393Cys	p.R1393C	ENST00000256646	NM_024408.3	1393	Cgc/Tgc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120529625	120529625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	116	339	0	ENST00000256646.2:c.832G>A	p.Gly278Arg	p.G278R	ENST00000256646	NM_024408.3	278	Ggg/Agg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838021	156838021	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	111	506	0	ENST00000524377.1:c.554A>G	p.His185Arg	p.H185R	ENST00000524377	NM_002529.3	185	cAc/cGc																																																																															
SDHC	6391	MSKCC	GRCh37	1	161310400	161310400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	92	267	0	ENST00000367975.2:c.196G>A	p.Ala66Thr	p.A66T	ENST00000367975	NM_003001.3	66	Gcg/Acg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199444	16199444	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	135	387	0	ENST00000375759.3:c.217G>T	p.Asp73Tyr	p.D73Y	ENST00000375759	NM_015001.2	73	Gac/Tac																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175958549	175958549	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1271141729		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	91	287	0	ENST00000367669.3:c.1796G>A	p.Arg599His	p.R599H	ENST00000367669	NM_022457.5	599	cGt/cAt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176104198	176104198	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1337346574		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	72	243	0	ENST00000367669.3:c.916G>A	p.Val306Ile	p.V306I	ENST00000367669	NM_022457.5	306	Gtc/Atc																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598953	28598953	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	119	419	0	ENST00000253063.3:c.513G>A	p.Trp171Ter	p.W171*	ENST00000253063	NM_031459.4	171	tgG/tgA																																																																															
STK40	83931	MSKCC	GRCh37	1	36807429	36807429	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs575657248		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	62	384	0	ENST00000373129.3:c.1235G>A	p.Arg412Gln	p.R412Q	ENST00000373129	NM_032017.1	412	cGg/cAg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65301789	65301789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	75	289	0	ENST00000342505.4:c.3250C>T	p.Pro1084Ser	p.P1084S	ENST00000342505	NM_002227.2	1084	Ccc/Tcc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429751	78429751	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	112	217	0	ENST00000370768.2:c.1037T>C	p.Val346Ala	p.V346A	ENST00000370768	NM_003902.3	346	gTt/gCt																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430891	78430891	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs749119435		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	120	262	0	ENST00000370768.2:c.498G>T	p.Gln166His	p.Q166H	ENST00000370768	NM_003902.3	166	caG/caT																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112764499	112764499	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	99	262	0	ENST00000369452.4:c.1108A>C	p.Ile370Leu	p.I370L	ENST00000369452	NM_007373.3	370	Att/Ctt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925381	114925381	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1294023302		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	109	388	0	ENST00000543371.1:c.1459G>A	p.Gly487Arg	p.G487R	ENST00000543371	NM_001198531.1	487	Gga/Aga																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123243283	123243283	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747941020		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	111	415	0	ENST00000358487.5:c.2230C>T	p.Pro744Ser	p.P744S	ENST00000358487	NM_000141.4	744	Ccc/Tcc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852266	63852266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	133	387	0	ENST00000279873.7:c.3044G>A	p.Ser1015Asn	p.S1015N	ENST00000279873	NM_032199.2	1015	aGc/aAc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852394	63852394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	108	348	0	ENST00000279873.7:c.3172C>T	p.His1058Tyr	p.H1058Y	ENST00000279873	NM_032199.2	1058	Cac/Tac																																																																															
TET1	80312	MSKCC	GRCh37	10	70442726	70442726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	83	288	0	ENST00000373644.4:c.5048C>T	p.Thr1683Ile	p.T1683I	ENST00000373644	NM_030625.2	1683	aCt/aTt																																																																															
PGR	5241	MSKCC	GRCh37	11	100998999	100998999	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	15	416	0	ENST00000325455.5:c.803T>C	p.Val268Ala	p.V268A	ENST00000325455	NM_001202474.3	268	gTc/gCc																																																																															
PGR	5241	MSKCC	GRCh37	11	100999278	100999278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	55	383	0	ENST00000325455.5:c.524G>A	p.Ser175Asn	p.S175N	ENST00000325455	NM_001202474.3	175	aGc/aAc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195398	102195398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	165	339	0	ENST00000263464.3:c.158C>A	p.Ala53Asp	p.A53D	ENST00000263464	NM_001165.4	53	gCt/gAt																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195890	102195890	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768158423		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	103	325	0	ENST00000263464.3:c.650C>T	p.Pro217Leu	p.P217L	ENST00000263464	NM_001165.4	217	cCg/cTg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102198792	102198792	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	78	218	0	ENST00000263464.3:c.963C>A	p.Tyr321Ter	p.Y321*	ENST00000263464	NM_001165.4	321	taC/taA																																																																															
CTR9	9646	MSKCC	GRCh37	11	10789687	10789687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	100	286	0	ENST00000361367.2:c.1939C>A	p.Leu647Met	p.L647M	ENST00000361367	NM_014633.3	647	Ctg/Atg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118348908	118348908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	70	232	0	ENST00000534358.1:c.3561G>T	p.Gln1187His	p.Q1187H	ENST00000534358	NM_005933.3	1187	caG/caT																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316343	14316343	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs141697442		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	98	277	0	ENST00000256196.4:c.262G>T	p.Gly88Cys	p.G88C	ENST00000256196		88	Ggc/Tgc																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316354	14316354	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	70	266	0	ENST00000256196.4:c.251G>T	p.Arg84Met	p.R84M	ENST00000256196		84	aGg/aTg																																																																															
HRAS	3265	MSKCC	GRCh37	11	532725	532725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758956556		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	66	323	0	ENST00000311189.7:c.481C>T	p.Arg161Cys	p.R161C	ENST00000311189		161	Cgt/Tgt																																																																															
HRAS	3265	MSKCC	GRCh37	11	532742	532742	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1269551105		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	55	307	0	ENST00000311189.7:c.464C>T	p.Ala155Val	p.A155V	ENST00000311189		155	gCc/gTc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64135665	64135665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	69	457	0	ENST00000334205.4:c.1133G>A	p.Gly378Glu	p.G378E	ENST00000334205	NM_003942.2	378	gGg/gAg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64574545	64574545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	84	377	0	ENST00000337652.1:c.865G>A	p.Ala289Thr	p.A289T	ENST00000337652	NM_130803.2	289	Gca/Aca																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67196707	67196707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	79	398	0	ENST00000312629.5:c.236G>A	p.Gly79Asp	p.G79D	ENST00000312629	NM_003952.2	79	gGc/gAc																																																																															
CCND1	595	MSKCC	GRCh37	11	69462818	69462818	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756509430		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	77	378	0	ENST00000227507.2:c.631G>A	p.Ala211Thr	p.A211T	ENST00000227507	NM_053056.2	211	Gca/Aca																																																																															
LMO1	4004	MSKCC	GRCh37	11	8248544	8248544	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201874026		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	16	373	0	ENST00000335790.3:c.343G>A	p.Ala115Thr	p.A115T	ENST00000335790	NM_002315.2	115	Gcc/Acc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94918605	94918605	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	82	286	0	ENST00000536441.1:c.577G>T	p.Ala193Ser	p.A193S	ENST00000536441	NM_144665.3	193	Gct/Tct																																																																															
RAD52	5893	MSKCC	GRCh37	12	1039008	1039008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	104	371	0	ENST00000358495.3:c.325G>A	p.Ala109Thr	p.A109T	ENST00000358495	NM_134424.2	109	Gca/Aca																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431485	121431485	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	118	378	1	ENST00000257555.6:c.689A>G	p.Glu230Gly	p.E230G	ENST00000257555		230	gAg/gGg																																																																															
POLE	5426	MSKCC	GRCh37	12	133237566	133237566	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	64	315	0	ENST00000320574.5:c.3049C>A	p.Leu1017Met	p.L1017M	ENST00000320574	NM_006231.2	1017	Ctg/Atg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18576880	18576880	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	72	259	0	ENST00000266497.5:c.2288C>A	p.Ala763Asp	p.A763D	ENST00000266497		763	gCt/gAt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21624554	21624554	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	97	279	0	ENST00000421138.2:c.1475A>G	p.Tyr492Cys	p.Y492C	ENST00000421138		492	tAc/tGc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21636352	21636352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	67	288	0	ENST00000421138.2:c.658G>A	p.Glu220Lys	p.E220K	ENST00000421138		220	Gaa/Aaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421636	49421636	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	89	305	0	ENST00000301067.7:c.14593C>A	p.Pro4865Thr	p.P4865T	ENST00000301067	NM_003482.3	4865	Cct/Act																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426201	49426201	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	99	398	0	ENST00000301067.7:c.12287G>T	p.Arg4096Met	p.R4096M	ENST00000301067	NM_003482.3	4096	aGg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433268	49433268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	78	421	1	ENST00000301067.7:c.8179C>T	p.Pro2727Ser	p.P2727S	ENST00000301067	NM_003482.3	2727	Cct/Tct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436413	49436413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	102	357	0	ENST00000301067.7:c.5798G>A	p.Gly1933Asp	p.G1933D	ENST00000301067	NM_003482.3	1933	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444483	49444483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	24	395	0	ENST00000301067.7:c.2888C>T	p.Ala963Val	p.A963V	ENST00000301067	NM_003482.3	963	gCc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446837	49446837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	86	466	0	ENST00000301067.7:c.973G>A	p.Ala325Thr	p.A325T	ENST00000301067	NM_003482.3	325	Gcc/Acc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56493643	56493643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	128	392	0	ENST00000267101.3:c.2959G>A	p.Ala987Thr	p.A987T	ENST00000267101	NM_001982.3	987	Gcc/Acc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437059	110437059	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	73	398	0	ENST00000375856.3:c.1342C>A	p.Leu448Met	p.L448M	ENST00000375856	NM_003749.2	448	Ctg/Atg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28610141	28610141	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144444671		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	81	279	0	ENST00000241453.7:c.1349C>T	p.Ala450Val	p.A450V	ENST00000241453	NM_004119.2	450	gCg/gTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964088	28964088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	86	339	0	ENST00000282397.4:c.1814G>A	p.Ser605Asn	p.S605N	ENST00000282397	NM_002019.4	605	aGc/aAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28980032	28980032	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs1231129831		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	83	224	0	ENST00000282397.4:c.1437-1G>T		p.X479_splice	ENST00000282397	NM_002019.4	479																																																																																
BRCA2	675	MSKCC	GRCh37	13	32950908	32950908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	32	317	1	ENST00000380152.3:c.8734G>A	p.Ala2912Thr	p.A2912T	ENST00000380152		2912	Gca/Aca																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134174	41134174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	82	388	0	ENST00000379561.5:c.1454C>T	p.Ala485Val	p.A485V	ENST00000379561	NM_002015.3	485	gCc/gTc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134498	41134498	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	105	356	0	ENST00000379561.5:c.1130A>C	p.Asn377Thr	p.N377T	ENST00000379561	NM_002015.3	377	aAt/aCt																																																																															
AKT1	207	MSKCC	GRCh37	14	105241450	105241450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	89	462	0	ENST00000349310.3:c.530C>T	p.Ala177Val	p.A177V	ENST00000349310	NM_001014432.1	177	gCc/gTc																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872958	35872958	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1489193786		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	97	258	0	ENST00000216797.5:c.274G>A	p.Glu92Lys	p.E92K	ENST00000216797	NM_020529.2	92	Gaa/Aaa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81606138	81606138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	102	360	0	ENST00000298171.2:c.808C>A	p.Leu270Ile	p.L270I	ENST00000298171	NM_000369.2	270	Ctt/Att																																																																															
DICER1	23405	MSKCC	GRCh37	14	95578562	95578562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs542398644		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	75	258	0	ENST00000343455.3:c.2063G>A	p.Arg688Gln	p.R688Q	ENST00000343455	NM_177438.2	688	cGa/cAa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95583025	95583025	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	92	279	0	ENST00000343455.3:c.1517G>T	p.Arg506Met	p.R506M	ENST00000343455	NM_177438.2	506	aGg/aTg																																																																															
MGA	23269	MSKCC	GRCh37	15	41988635	41988635	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	92	340	0	ENST00000219905.7:c.1427T>C	p.Val476Ala	p.V476A	ENST00000219905	NM_001164273.1	476	gTc/gCc																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51504657	51504657	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121434536		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	96	349	1	ENST00000260433.2:c.1123C>T	p.Arg375Cys	p.R375C	ENST00000260433		375	Cgc/Tgc																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2647733	2647733	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1456303446		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	69	341	0	ENST00000342085.4:c.1636C>T	p.Arg546Ter	p.R546*	ENST00000342085	NM_002613.4	546	Cga/Tga																																																																															
SLX4	84464	MSKCC	GRCh37	16	3642745	3642745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	77	349	0	ENST00000294008.3:c.2282G>A	p.Gly761Asp	p.G761D	ENST00000294008	NM_032444.2	761	gGc/gAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820860	3820860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	94	398	0	ENST00000262367.5:c.2591C>A	p.Ala864Asp	p.A864D	ENST00000262367	NM_004380.2	864	gCt/gAt																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813617	50813617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	82	251	0	ENST00000398568.2:c.1171G>A	p.Asp391Asn	p.D391N	ENST00000398568	NM_001042412.1	391	Gac/Aac																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868111	56868111	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371707121		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	106	327	0	ENST00000308159.5:c.1609C>T	p.Arg537Trp	p.R537W	ENST00000308159	NM_014669.4	537	Cgg/Tgg																																																																															
CDH1	999	MSKCC	GRCh37	16	68844115	68844115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	87	320	0	ENST00000261769.5:c.703G>A	p.Val235Met	p.V235M	ENST00000261769	NM_004360.3	235	Gtg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832005	72832005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	75	371	0	ENST00000268489.5:c.4576C>T	p.Pro1526Ser	p.P1526S	ENST00000268489	NM_006885.3	1526	Cct/Tct																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993610	72993610	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	99	515	0	ENST00000268489.5:c.435G>T	p.Glu145Asp	p.E145D	ENST00000268489	NM_006885.3	145	gaG/gaT																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81946222	81946222	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	55	331	0	ENST00000359376.3:c.1955G>T	p.Ser652Ile	p.S652I	ENST00000359376	NM_002661.3	652	aGc/aTc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81965152	81965152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	88	363	0	ENST00000359376.3:c.2632C>T	p.Pro878Ser	p.P878S	ENST00000359376	NM_002661.3	878	Ccc/Tcc																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86546600	86546600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	52	444	0	ENST00000262426.4:c.1049C>T	p.Ala350Val	p.A350V	ENST00000262426	NM_001451.2	350	gCc/gTc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350820	89350820	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	100	303	0	ENST00000301030.4:c.2130G>A	p.Trp710Ter	p.W710*	ENST00000301030	NM_001256183.1	710	tgG/tgA																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357421	89357421	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	69	355	0	ENST00000301030.4:c.397G>T	p.Val133Leu	p.V133L	ENST00000301030	NM_001256183.1	133	Gtg/Ttg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892205	9892205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	88	382	0	ENST00000330684.3:c.2285G>T	p.Gly762Val	p.G762V	ENST00000330684	NM_001134407.1	762	gGa/gTa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11999011	11999011	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	75	209	0	ENST00000353533.5:c.513G>T	p.Glu171Asp	p.E171D	ENST00000353533	NM_003010.3	171	gaG/gaT																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15942818	15942818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	111	345	0	ENST00000268712.3:c.6884G>A	p.Gly2295Asp	p.G2295D	ENST00000268712	NM_006311.3	2295	gGt/gAt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16049859	16049859	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	76	226	0	ENST00000268712.3:c.913C>T	p.Gln305Ter	p.Q305*	ENST00000268712	NM_006311.3	305	Caa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29679379	29679379	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	93	315	0	ENST00000358273.4:c.7562C>A	p.Ser2521Tyr	p.S2521Y	ENST00000358273	NM_001042492.2	2521	tCc/tAc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264414	30264414	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	75	373	0	ENST00000322652.5:c.149G>T	p.Gly50Val	p.G50V	ENST00000322652	NM_015355.2	50	gGc/gTc																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690238	33690239	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	102	372	1	ENST00000308377.4:c.588dup	p.Asp197ArgfsTer4	p.D197Rfs*4	ENST00000308377	NM_152270.3	196	-/A																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40458445	40458445	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	35	256	0	ENST00000345506.4:c.1660T>G	p.Ser554Ala	p.S554A	ENST00000345506	NM_003152.3	554	Tcc/Gcc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78867576	78867576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	79	408	0	ENST00000306801.3:c.2312G>A	p.Ser771Asn	p.S771N	ENST00000306801	NM_020761.2	771	aGc/aAc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78921131	78921131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	63	333	0	ENST00000306801.3:c.3245C>T	p.Ser1082Leu	p.S1082L	ENST00000306801	NM_020761.2	1082	tCg/tTg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39607435	39607435	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	64	232	0	ENST00000262039.4:c.1513G>T	p.Asp505Tyr	p.D505Y	ENST00000262039	NM_002647.2	505	Gat/Tat																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374968	45374968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	119	289	0	ENST00000262160.6:c.875C>T	p.Ala292Val	p.A292V	ENST00000262160	NM_005901.5	292	gCa/gTa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602549	10602549	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	103	468	0	ENST00000171111.5:c.1029G>T	p.Glu343Asp	p.E343D	ENST00000171111	NM_203500.1	343	gaG/gaT																																																																															
CARM1	10498	MSKCC	GRCh37	19	11018772	11018772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	91	350	0	ENST00000327064.4:c.404C>T	p.Ser135Phe	p.S135F	ENST00000327064	NM_199141.1	135	tCt/tTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121180	11121180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	64	346	0	ENST00000344626.4:c.2247G>A	p.Met749Ile	p.M749I	ENST00000344626	NM_003072.3	749	atG/atA																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15273280	15273280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	52	282	0	ENST00000263388.2:c.5909G>A	p.Ser1970Asn	p.S1970N	ENST00000263388	NM_000435.2	1970	aGc/aAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281159	15281159	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	75	423	0	ENST00000263388.2:c.5097G>T	p.Gln1699His	p.Q1699H	ENST00000263388	NM_000435.2	1699	caG/caT																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291879	15291879	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199978689		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	45	416	0	ENST00000263388.2:c.2887G>A	p.Ala963Thr	p.A963T	ENST00000263388	NM_000435.2	963	Gca/Aca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291897	15291897	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	56	400	0	ENST00000263388.2:c.2869G>T	p.Ala957Ser	p.A957S	ENST00000263388	NM_000435.2	957	Gcc/Tcc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350301	15350301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	57	372	0	ENST00000263377.2:c.3478C>T	p.Pro1160Ser	p.P1160S	ENST00000263377	NM_058243.2	1160	Cct/Tct																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375292	15375292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	69	361	0	ENST00000263377.2:c.1135C>T	p.Pro379Ser	p.P379S	ENST00000263377	NM_058243.2	379	Cct/Tct																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110304	3110304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	71	350	0	ENST00000078429.4:c.294G>T	p.Lys98Asn	p.K98N	ENST00000078429	NM_002067.2	98	aaG/aaT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211924	36211924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	75	398	0	ENST00000222270.7:c.1675G>A	p.Val559Ile	p.V559I	ENST00000222270	NM_014727.1	559	Gtc/Atc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218796	36218796	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	90	508	0	ENST00000222270.7:c.4407G>T	p.Glu1469Asp	p.E1469D	ENST00000222270	NM_014727.1	1469	gaG/gaT																																																																															
CIC	23152	MSKCC	GRCh37	19	42794775	42794775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	74	428	1	ENST00000575354.2:c.1855G>A	p.Ala619Thr	p.A619T	ENST00000575354	NM_015125.3	619	Gcc/Acc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422935	47422935	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1260326941		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	90	387	1	ENST00000404338.3:c.1003C>T	p.Arg335Cys	p.R335C	ENST00000404338	NM_004491.4	335	Cgt/Tgt																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424805	47424805	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1246906280		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	126	394	0	ENST00000404338.3:c.2873C>T	p.Ala958Val	p.A958V	ENST00000404338	NM_004491.4	958	gCc/gTc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52719042	52719042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	70	356	1	ENST00000322088.6:c.818C>T	p.Ala273Val	p.A273V	ENST00000322088	NM_014225.5	273	gCa/gTa																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52724330	52724330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	80	395	0	ENST00000322088.6:c.1462G>A	p.Ala488Thr	p.A488T	ENST00000322088	NM_014225.5	488	Gcc/Acc																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222310	6222310	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	85	473	0	ENST00000252674.7:c.932C>A	p.Ala311Asp	p.A311D	ENST00000252674	NM_005934.3	311	gCt/gAt																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222551	6222551	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780725072		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	65	469	0	ENST00000252674.7:c.691C>T	p.Arg231Trp	p.R231W	ENST00000252674	NM_005934.3	231	Cgg/Tgg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198257844	198257844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	117	331	0	ENST00000335508.6:c.3608G>A	p.Gly1203Asp	p.G1203D	ENST00000335508	NM_012433.2	1203	gGt/gAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488739	212488739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	105	379	0	ENST00000342788.4:c.2110G>T	p.Ala704Ser	p.A704S	ENST00000342788	NM_005235.2	704	Gca/Tca																																																																															
BARD1	580	MSKCC	GRCh37	2	215593564	215593564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	124	394	0	ENST00000260947.4:c.2170G>A	p.Ala724Thr	p.A724T	ENST00000260947	NM_000465.2	724	Gcg/Acg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662652	227662652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	117	391	0	ENST00000305123.5:c.803G>T	p.Ser268Ile	p.S268I	ENST00000305123	NM_005544.2	268	aGc/aTc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794980	242794980	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	61	434	0	ENST00000334409.5:c.229G>T	p.Asp77Tyr	p.D77Y	ENST00000334409	NM_005018.2	77	Gac/Tac																																																																															
CENPA	1058	MSKCC	GRCh37	2	27016122	27016122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	72	276	0	ENST00000335756.4:c.398G>A	p.Arg133Gln	p.R133Q	ENST00000335756	NM_001809.3	133	cGg/cAg																																																																															
ALK	238	MSKCC	GRCh37	2	29419650	29419650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	69	287	0	ENST00000389048.3:c.4150G>A	p.Glu1384Lys	p.E1384K	ENST00000389048	NM_004304.4	1384	Gaa/Aaa																																																																															
ALK	238	MSKCC	GRCh37	2	29519901	29519901	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200468507		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	87	335	0	ENST00000389048.3:c.1670G>A	p.Arg557His	p.R557H	ENST00000389048	NM_004304.4	557	cGt/cAt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024075	31024075	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755170442		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	100	423	0	ENST00000375687.4:c.3560G>A	p.Gly1187Asp	p.G1187D	ENST00000375687	NM_015338.5	1187	gGt/gAt																																																																															
SRC	6714	MSKCC	GRCh37	20	36030986	36030986	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	59	334	0	ENST00000358208.4:c.1265G>T	p.Arg422Leu	p.R422L	ENST00000358208		422	cGg/cTg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656930	45656930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	101	393	0	ENST00000407780.3:c.226G>A	p.Val76Met	p.V76M	ENST00000407780	NM_001283052.1	76	Gtg/Atg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21348875	21348875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	71	418	0	ENST00000215739.8:c.1644G>T	p.Met548Ile	p.M548I	ENST00000215739	NM_006767.3	548	atG/atT																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446535	29446535	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771671819		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	71	425	0	ENST00000544604.2:c.2366G>A	p.Arg789His	p.R789H	ENST00000544604	NM_001206998.1	789	cGc/cAc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446583	29446583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	79	418	0	ENST00000544604.2:c.2414G>A	p.Ser805Asn	p.S805N	ENST00000544604	NM_001206998.1	805	aGt/aAt																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119634943	119634943	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	115	305	0	ENST00000316626.5:c.556A>G	p.Asn186Asp	p.N186D	ENST00000316626		186	Aac/Gac																																																																															
ATR	545	MSKCC	GRCh37	3	142277571	142277571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	84	226	0	ENST00000350721.4:c.1780C>T	p.Leu594Phe	p.L594F	ENST00000350721	NM_001184.3	594	Ctc/Ttc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170011260	170011260	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	81	267	0	ENST00000295797.4:c.1381A>G	p.Asn461Asp	p.N461D	ENST00000295797	NM_002740.5	461	Aac/Gac																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170016783	170016783	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	53	184	0	ENST00000295797.4:c.1588A>C	p.Met530Leu	p.M530L	ENST00000295797	NM_002740.5	530	Atg/Ctg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186507026	186507026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	107	287	0	ENST00000323963.5:c.1192G>A	p.Glu398Lys	p.E398K	ENST00000323963		398	Gag/Aag																																																																															
BCL6	604	MSKCC	GRCh37	3	187447256	187447256	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	77	403	0	ENST00000232014.4:c.937G>T	p.Ala313Ser	p.A313S	ENST00000232014	NM_001130845.1	313	Gcc/Tcc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37061878	37061878	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs63750286		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	87	385	0	ENST00000231790.2:c.962G>T	p.Ser321Ile	p.S321I	ENST00000231790	NM_000249.3	321	aGc/aTc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266196	41266196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	25	335	0	ENST00000349496.5:c.193G>A	p.Glu65Lys	p.E65K	ENST00000349496	NM_001904.3	65	Gag/Aag																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981944	63981944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	117	395	0	ENST00000295900.6:c.2446G>A	p.Val816Ile	p.V816I	ENST00000295900	NM_000333.3	816	Gtc/Atc																																																																															
RYBP	23429	MSKCC	GRCh37	3	72428263	72428263	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	102	305	0	ENST00000477973.2:c.627C>A	p.Pro210His	p.P210H	ENST00000477973	NM_012234.5	210	cCt/cAt																																																																															
TET2	54790	MSKCC	GRCh37	4	106193929	106193929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	93	325	0	ENST00000380013.4:c.4391G>A	p.Cys1464Tyr	p.C1464Y	ENST00000380013	NM_001127208.2	1464	tGc/tAc																																																																															
TET2	54790	MSKCC	GRCh37	4	106196334	106196334	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	123	394	0	ENST00000380013.4:c.4667C>A	p.Ser1556Tyr	p.S1556Y	ENST00000380013	NM_001127208.2	1556	tCt/tAt																																																																															
GAB1	2549	MSKCC	GRCh37	4	144354647	144354647	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	75	239	0	ENST00000262994.4:c.371C>A	p.Pro124His	p.P124H	ENST00000262994	NM_002039.3	124	cCt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187525113	187525113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1462602438		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	84	257	0	ENST00000441802.2:c.10567C>T	p.Pro3523Ser	p.P3523S	ENST00000441802	NM_005245.3	3523	Cct/Tct																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538315	187538315	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	90	269	0	ENST00000441802.2:c.8919G>T	p.Gln2973His	p.Q2973H	ENST00000441802	NM_005245.3	2973	caG/caT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542287	187542287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	91	383	0	ENST00000441802.2:c.5453C>T	p.Thr1818Ile	p.T1818I	ENST00000441802	NM_005245.3	1818	aCa/aTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584599	187584599	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	79	365	0	ENST00000441802.2:c.3434A>G	p.Tyr1145Cys	p.Y1145C	ENST00000441802	NM_005245.3	1145	tAc/tGc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630464	187630464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	121	414	0	ENST00000441802.2:c.518C>T	p.Ala173Val	p.A173V	ENST00000441802	NM_005245.3	173	gCc/gTc																																																																															
KIT	3815	MSKCC	GRCh37	4	55589864	55589864	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	59	235	0	ENST00000288135.5:c.1346G>T	p.Arg449Ile	p.R449I	ENST00000288135	NM_000222.2	449	aGa/aTa																																																																															
KIT	3815	MSKCC	GRCh37	4	55603443	55603443	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	64	241	0	ENST00000288135.5:c.2799T>A	p.Asn933Lys	p.N933K	ENST00000288135	NM_000222.2	933	aaT/aaA																																																																															
KDR	3791	MSKCC	GRCh37	4	55981162	55981162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	81	304	0	ENST00000263923.4:c.537G>A	p.Trp179Ter	p.W179*	ENST00000263923	NM_002253.2	179	tgG/tgA																																																																															
REST	5978	MSKCC	GRCh37	4	57776863	57776863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	112	319	0	ENST00000309042.7:c.59G>A	p.Gly20Asp	p.G20D	ENST00000309042	NM_005612.4	20	gGc/gAc																																																																															
REST	5978	MSKCC	GRCh37	4	57796764	57796764	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	108	369	0	ENST00000309042.7:c.1740G>T	p.Lys580Asn	p.K580N	ENST00000309042	NM_005612.4	580	aaG/aaT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467906	66467906	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	74	286	0	ENST00000273854.3:c.363A>C	p.Glu121Asp	p.E121D	ENST00000273854	NM_004439.5	121	gaA/gaC																																																																															
TERT	7015	MSKCC	GRCh37	5	1296518	1296518	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			25	14	40	0				ENST00000310581	NM_198253.2																																																																																	
RAD50	10111	MSKCC	GRCh37	5	131911556	131911556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	105	254	0	ENST00000265335.6:c.301G>A	p.Val101Met	p.V101M	ENST00000265335		101	Gtg/Atg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520213	176520213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	72	405	0	ENST00000292408.4:c.1132C>A	p.Leu378Met	p.L378M	ENST00000292408	NM_213647.1	378	Ctg/Atg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520729	176520729	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	57	308	0	ENST00000292408.4:c.1472C>A	p.Pro491His	p.P491H	ENST00000292408	NM_213647.1	491	cCt/cAt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637773	176637773	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	109	376	0	ENST00000439151.2:c.2373G>T	p.Lys791Asn	p.K791N	ENST00000439151	NM_022455.4	791	aaG/aaT																																																																															
NSD1	64324	MSKCC	GRCh37	5	176684065	176684065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	115	349	0	ENST00000439151.2:c.4879G>A	p.Val1627Ile	p.V1627I	ENST00000439151	NM_022455.4	1627	Gtt/Att																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721483	176721483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	118	397	0	ENST00000439151.2:c.7114C>A	p.Pro2372Thr	p.P2372T	ENST00000439151	NM_022455.4	2372	Ccc/Acc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046743	180046743	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267606818		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	68	464	0	ENST00000261937.6:c.2569G>A	p.Gly857Arg	p.G857R	ENST00000261937	NM_182925.4	857	Ggg/Agg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31508873	31508873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	67	259	0	ENST00000344624.3:c.1442G>T	p.Ser481Ile	p.S481I	ENST00000344624		481	aGt/aTt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753408	57753408	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1226658961		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	85	243	0	ENST00000274289.3:c.716C>T	p.Thr239Met	p.T239M	ENST00000274289	NM_006622.3	239	aCg/aTg																																																																															
TRIP13	9319	MSKCC	GRCh37	5	895059	895059	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs764565139		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	90	231	0	ENST00000166345.3:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000166345	NM_004237.3	84	Gac/Tac																																																																															
SESN1	27244	MSKCC	GRCh37	6	109322544	109322544	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	132	274	0	ENST00000436639.2:c.493C>A	p.Leu165Met	p.L165M	ENST00000436639	NM_014454.2	165	Ctg/Atg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117715396	117715396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	99	271	0	ENST00000368508.3:c.1093G>T	p.Gly365Cys	p.G365C	ENST00000368508	NM_002944.2	365	Ggt/Tgt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675180	30675180	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	93	381	0	ENST00000376406.3:c.3065C>A	p.Ala1022Asp	p.A1022D	ENST00000376406	NM_014641.2	1022	gCt/gAt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30676045	30676045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	91	327	0	ENST00000376406.3:c.2311C>T	p.His771Tyr	p.H771Y	ENST00000376406	NM_014641.2	771	Cac/Tac																																																																															
IRF4	3662	MSKCC	GRCh37	6	394945	394945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	69	322	0	ENST00000380956.4:c.341G>T	p.Ser114Ile	p.S114I	ENST00000380956	NM_001195286.1	114	aGc/aTc																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790875	89790875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	102	408	0	ENST00000336032.3:c.262G>T	p.Gly88Cys	p.G88C	ENST00000336032	NM_006813.2	88	Ggc/Tgc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508301	106508301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	165	394	0	ENST00000359195.3:c.295C>T	p.Leu99Phe	p.L99F	ENST00000359195	NM_002649.2	99	Ctc/Ttc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509674	106509674	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	85	367	0	ENST00000359195.3:c.1668G>T	p.Glu556Asp	p.E556D	ENST00000359195	NM_002649.2	556	gaG/gaT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545566	106545566	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	68	243	0	ENST00000359195.3:c.3043A>G	p.Lys1015Glu	p.K1015E	ENST00000359195	NM_002649.2	1015	Aag/Gag																																																																															
SMO	6608	MSKCC	GRCh37	7	128850862	128850862	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	105	342	0	ENST00000249373.3:c.1709C>A	p.Ala570Asp	p.A570D	ENST00000249373	NM_005631.4	570	gCc/gAc																																																																															
RHEB	6009	MSKCC	GRCh37	7	151181844	151181844	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	95	248	0	ENST00000262187.5:c.171A>C	p.Gln57His	p.Q57H	ENST00000262187	NM_005614.3	57	caA/caC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845458	151845458	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	234	379	0	ENST00000262189.6:c.13554C>A	p.Tyr4518Ter	p.Y4518*	ENST00000262189	NM_170606.2	4518	taC/taA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151875060	151875060	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	89	249	0	ENST00000262189.6:c.7478C>A	p.Pro2493Gln	p.P2493Q	ENST00000262189	NM_170606.2	2493	cCg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132802	152132802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	62	263	0	ENST00000262189.6:c.70G>A	p.Ala24Thr	p.A24T	ENST00000262189	NM_170606.2	24	Gcc/Acc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55211038	55211038	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	49	337	0	ENST00000275493.2:c.281A>C	p.Asn94Thr	p.N94T	ENST00000275493	NM_005228.3	94	aAc/aCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55269025	55269025	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1490923813		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	246	412	0	ENST00000275493.2:c.3091C>T	p.Arg1031Trp	p.R1031W	ENST00000275493	NM_005228.3	1031	Cgg/Tgg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737895	145737895	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	92	459	0	ENST00000428558.2:c.2935G>T	p.Gly979Trp	p.G979W	ENST00000428558	NM_004260.3	979	Ggg/Tgg																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29195813	29195813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	61	323	0	ENST00000240100.2:c.785C>T	p.Ala262Val	p.A262V	ENST00000240100	NM_001394.6	262	gCc/gTc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205417	38205417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	101	342	0	ENST00000317025.8:c.273G>T	p.Gln91His	p.Q91H	ENST00000317025	NM_023034.1	91	caG/caT																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101867494	101867494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	49	335	0	ENST00000374994.4:c.7G>A	p.Ala3Thr	p.A3T	ENST00000374994	NM_004612.2	3	Gcg/Acg																																																																															
ABL1	25	MSKCC	GRCh37	9	133753864	133753864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	79	299	0	ENST00000318560.5:c.1333C>A	p.Leu445Met	p.L445M	ENST00000318560	NM_005157.4	445	Ctg/Atg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399126	139399126	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1226514285		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	52	359	0	ENST00000277541.6:c.5017G>A	p.Gly1673Ser	p.G1673S	ENST00000277541	NM_017617.3	1673	Ggc/Agc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139403371	139403371	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1256020862		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	75	417	0	ENST00000277541.6:c.3122G>A	p.Gly1041Asp	p.G1041D	ENST00000277541	NM_017617.3	1041	gGc/gAc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139820345	139820345	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	47	351	0	ENST00000247668.2:c.1498G>T	p.Gly500Trp	p.G500W	ENST00000247668	NM_021138.3	500	Ggg/Tgg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2033076	2033076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	91	316	0	ENST00000349721.2:c.350G>A	p.Ser117Asn	p.S117N	ENST00000349721	NM_003070.3	117	aGc/aAc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2077648	2077648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	97	299	0	ENST00000349721.2:c.2056G>T	p.Asp686Tyr	p.D686Y	ENST00000349721	NM_003070.3	686	Gat/Tat																																																																															
MTAP	4507	MSKCC	GRCh37	9	21815514	21815514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	59	184	0	ENST00000380172.4:c.116G>A	p.Gly39Asp	p.G39D	ENST00000380172	NM_002451.3	39	gGc/gAc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2186142	2186142	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763271526		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	97	336	0	ENST00000349721.2:c.4508G>A	p.Arg1503Gln	p.R1503Q	ENST00000349721	NM_003070.3	1503	cGg/cAg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080582	5080582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	122	258	0	ENST00000381652.3:c.2333C>T	p.Ala778Val	p.A778V	ENST00000381652	NM_004972.3	778	gCa/gTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376701	8376701	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749139770		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	86	263	0	ENST00000356435.5:c.4412G>A	p.Ser1471Asn	p.S1471N	ENST00000356435		1471	aGc/aAc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44732846	44732846	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1018780128		P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			46	62	134	0	ENST00000377967.4:c.49G>A	p.Ala17Thr	p.A17T	ENST00000377967	NM_021140.2	17	Gct/Act																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949152	44949152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			63	87	139	0	ENST00000377967.4:c.3713C>T	p.Ala1238Val	p.A1238V	ENST00000377967	NM_021140.2	1238	gCt/gTt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410235	63410235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			72	81	217	0	ENST00000330258.3:c.2932A>G	p.Asn978Asp	p.N978D	ENST00000330258	NM_152424.3	978	Aac/Gac																																																																															
MED12	9968	MSKCC	GRCh37	X	70342162	70342162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	98	171	0	ENST00000374080.3:c.1214C>T	p.Pro405Leu	p.P405L	ENST00000374080		405	cCc/cTc																																																																															
MED12	9968	MSKCC	GRCh37	X	70351988	70351988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			69	98	144	0	ENST00000374080.3:c.4185G>T	p.Glu1395Asp	p.E1395D	ENST00000374080		1395	gaG/gaT																																																																															
ATRX	546	MSKCC	GRCh37	X	76763831	76763831	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			72	92	124	0	ENST00000373344.5:c.7477T>C	p.Ter2493ArgextTer10	p.*2493Rext*10	ENST00000373344	NM_000489.3	2493	Tga/Cga																																																																															
ATRX	546	MSKCC	GRCh37	X	76949363	76949363	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			89	94	132	0	ENST00000373344.5:c.434A>G	p.Glu145Gly	p.E145G	ENST00000373344	NM_000489.3	145	gAa/gGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577126	7577126	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	78	434	0	ENST00000269305.4:c.812A>T	p.Glu271Val	p.E271V	ENST00000269305	NM_001126112.2	271	gAg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	92	422	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1060501201		P-0080503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	99	395	0	ENST00000269305.4:c.773A>G	p.Glu258Gly	p.E258G	ENST00000269305	NM_001126112.2	258	gAa/gGa																																																																															
APC	324	MSKCC	GRCh37	5	112175021	112175021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	72	397	0	ENST00000257430.4:c.3730C>T	p.Gln1244Ter	p.Q1244*	ENST00000257430	NM_000038.5	1244	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0080503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	976	359	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
TSC2	7249	MSKCC	GRCh37	16	2110711	2110711	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	77	523	0	ENST00000219476.3:c.1016T>A	p.Val339Asp	p.V339D	ENST00000219476	NM_000548.3	339	gTc/gAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42028648	42028648	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1188544730		P-0080503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	97	464	0	ENST00000219905.7:c.4186A>G	p.Lys1396Glu	p.K1396E	ENST00000219905	NM_001164273.1	1396	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0080504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	65	338	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
RB1	5925	MSKCC	GRCh37	13	48941638	48941641	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0080504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	65	86	0	ENST00000267163.4:c.951_954del	p.Ser318AsnfsTer13	p.S318Nfs*13	ENST00000267163	NM_000321.2	316	aaTCTT/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	58	169	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134251	11134251	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1218643327		P-0080504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	70	292	0	ENST00000344626.4:c.2917C>T	p.Arg973Trp	p.R973W	ENST00000344626	NM_003072.3	973	Cgg/Tgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166809	32166809	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	31	365	0	ENST00000375023.3:c.4429G>T	p.Glu1477Ter	p.E1477*	ENST00000375023	NM_004557.3	1477	Gag/Tag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212389	36212389	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	216	495	1	ENST00000222270.7:c.2141del	p.Pro714LeufsTer14	p.P714Lfs*14	ENST00000222270	NM_014727.1	714	Cct/ct																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911540	134911540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	63	484	0	ENST00000398015.3:c.2005G>A	p.Ala669Thr	p.A669T	ENST00000398015	NM_004441.4	669	Gcg/Acg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061217	38061243	+	inframe_deletion	In_Frame_Del	DEL	AGCCGTTCTCGAACATGTTGCCGGAGT	AGCCGTTCTCGAACATGTTGCCGGAGT	-			P-0080505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	166	483	0	ENST00000250448.2:c.746_772del	p.Asp249_Cys258delinsGly	p.D249_C258delinsG	ENST00000250448	NM_004496.3	249	gACTCCGGCAACATGTTCGAGAACGGCTgc/ggc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37673693	37673693	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0080505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	182	407	0	ENST00000447079.4:c.2847C>G	p.Ser949Arg	p.S949R	ENST00000447079	NM_015083.1	949	agC/agG																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657547	37657547	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0080505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	75	377	0	ENST00000447079.4:c.2464G>T	p.Gly822Ter	p.G822*	ENST00000447079	NM_015083.1	822	Gga/Tga																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503901	47503901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	42	458	0	ENST00000404338.3:c.4456C>T	p.Gln1486Ter	p.Q1486*	ENST00000404338	NM_004491.4	1486	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0080510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	37	202	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0080510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	203	472	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0080510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	178	306	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
MGA	23269	MSKCC	GRCh37	15	42052632	42052632	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779811318		P-0080510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	43	488	0	ENST00000219905.7:c.7303C>T	p.Arg2435Trp	p.R2435W	ENST00000219905	NM_001164273.1	2435	Cgg/Tgg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15378304	15378305	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0080510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	62	422	0	ENST00000263377.2:c.481dup	p.Ile161AsnfsTer3	p.I161Nfs*3	ENST00000263377	NM_058243.2	161	ata/aAta																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151875049	151875049	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150994342		P-0080510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	111	340	0	ENST00000262189.6:c.7489C>T	p.Arg2497Cys	p.R2497C	ENST00000262189	NM_170606.2	2497	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860110	151860110	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	104	559	0	ENST00000262189.6:c.10552G>C	p.Asp3518His	p.D3518H	ENST00000262189	NM_170606.2	3518	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0080516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	55	399	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727453	66727453	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397516790		P-0080516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	61	450	0	ENST00000307102.5:c.169A>G	p.Lys57Glu	p.K57E	ENST00000307102	NM_002755.3	57	Aag/Gag																																																																															
APC	324	MSKCC	GRCh37	5	112175378	112175378	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0080516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	81	413	0	ENST00000257430.4:c.4087A>T	p.Lys1363Ter	p.K1363*	ENST00000257430	NM_000038.5	1363	Aaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0080518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	46	248	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175780	112175780	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	76	495	0	ENST00000257430.4:c.4490del	p.Pro1497GlnfsTer10	p.P1497Qfs*10	ENST00000257430	NM_000038.5	1497	Cca/ca																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591901	48591901	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	91	532	2	ENST00000342988.3:c.1064A>G	p.Asp355Gly	p.D355G	ENST00000342988	NM_005359.5	355	gAc/gGc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664684	138664684	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1250027312		P-0080518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	50	439	0	ENST00000330315.3:c.881C>T	p.Pro294Leu	p.P294L	ENST00000330315	NM_023067.3	294	cCg/cTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584808	48584808	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	94	496	0	ENST00000342988.3:c.889del	p.His297IlefsTer39	p.H297Ifs*39	ENST00000342988	NM_005359.5	296	Ccc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	118	285	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CTR9	9646	MSKCC	GRCh37	11	10800422	10800422	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376210239		P-0080518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	76	512	0	ENST00000361367.2:c.3292G>A	p.Gly1098Ser	p.G1098S	ENST00000361367	NM_014633.3	1098	Ggt/Agt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134885822	134885822	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0080518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	113	509	0	ENST00000398015.3:c.1733A>C	p.Lys578Thr	p.K578T	ENST00000398015	NM_004441.4	578	aAg/aCg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40879688	40879688	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	75	377	0	ENST00000428826.2:c.211del	p.Met71Ter	p.M71*	ENST00000428826		71	Atg/tg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716040	243716040	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	62	373	0	ENST00000263826.5:c.1154C>A	p.Pro385Gln	p.P385Q	ENST00000263826	NM_005465.4	385	cCa/cAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953521	32953521	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0080518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	54	477	0	ENST00000380152.3:c.8822A>C	p.Gln2941Pro	p.Q2941P	ENST00000380152		2941	cAa/cCa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984401	201984401	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	122	487	0	ENST00000359651.3:c.1070del	p.Asn357ThrfsTer90	p.N357Tfs*90	ENST00000359651		356	Aaa/aa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36938270	36938271	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs767251022		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	114	432	0	ENST00000361632.4:c.690dup	p.Met231HisfsTer10	p.M231Hfs*10	ENST00000361632		230	-/C																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430905	78430906	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1405120226		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	112	344	0	ENST00000370768.2:c.483dup	p.Arg162ThrfsTer8	p.R162Tfs*8	ENST00000370768	NM_003902.3	161	-/A																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118369218	118369218	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782785673		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	163	381	0	ENST00000534358.1:c.5936G>A	p.Arg1979Gln	p.R1979Q	ENST00000534358	NM_005933.3	1979	cGa/cAa																																																																															
HRAS	3265	MSKCC	GRCh37	11	534288	534288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894230		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	105	489	0	ENST00000311189.7:c.35G>A	p.Gly12Asp	p.G12D	ENST00000311189		12	gGc/gAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	111	609	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885496	111885496	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200907236		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	136	563	0	ENST00000341259.2:c.1273C>T	p.Arg425Cys	p.R425C	ENST00000341259	NM_005475.2	425	Cgt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	107	556	3	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447773	49447773	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	133	416	0	ENST00000301067.7:c.661del	p.Ala221LeufsTer40	p.A221Lfs*40	ENST00000301067	NM_003482.3	221	Gct/ct																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30194846	30194846	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	129	399	0	ENST00000331968.5:c.299A>C	p.Lys100Thr	p.K100T	ENST00000331968	NM_002742.2	100	aAg/aCg																																																																															
B2M	567	MSKCC	GRCh37	15	45003788	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	123	445	0	ENST00000558401.1:c.45_46del	p.Ser16TrpfsTer40	p.S16Wfs*40	ENST00000558401	NM_004048.2	15	cTT/c																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	128	458	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	138	576	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845511	72845511	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750527365		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	134	517	0	ENST00000268489.5:c.3829G>A	p.Val1277Met	p.V1277M	ENST00000268489	NM_006885.3	1277	Gtg/Atg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349024	89349024	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779550492		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	135	543	0	ENST00000301030.4:c.3926C>T	p.Thr1309Met	p.T1309M	ENST00000301030	NM_001256183.1	1309	aCg/aTg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	125	523	5	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	115	507	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273105	18273105	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	160	607	0	ENST00000222254.8:c.1000del	p.Asp334ThrfsTer7	p.D334Tfs*7	ENST00000222254	NM_005027.3	332	tGg/tg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	138	691	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274290	5274290	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368676720		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	110	484	0	ENST00000357368.4:c.157G>A	p.Val53Met	p.V53M	ENST00000357368	NM_002850.3	53	Gtg/Atg																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735570	204735570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757773669		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	145	467	0	ENST00000302823.3:c.371C>T	p.Thr124Met	p.T124M	ENST00000302823	NM_005214.4	124	aCg/aTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	150	502	5	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96920699	96920699	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746831347		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	89	404	0	ENST00000258439.3:c.281G>A	p.Arg94Gln	p.R94Q	ENST00000258439	NM_001193304.2	94	cGg/cAg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164604	36164604	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1476276192		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	107	322	0	ENST00000300305.3:c.1271C>T	p.Ser424Leu	p.S424L	ENST00000300305		424	tCg/tTg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21348020	21348020	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775051211		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	96	490	0	ENST00000215739.8:c.1330G>A	p.Asp444Asn	p.D444N	ENST00000215739	NM_006767.3	444	Gac/Aac																																																																															
EP300	2033	MSKCC	GRCh37	22	41568501	41568501	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	40	277	0	ENST00000263253.7:c.4453-2A>G		p.X1485_splice	ENST00000263253	NM_001429.3	1485																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178916644	178916644	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	91	335	0	ENST00000263967.3:c.31T>G	p.Trp11Gly	p.W11G	ENST00000263967	NM_006218.2	11	Tgg/Ggg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	87	408	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104893810		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	148	478	0	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244155	153244156	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			708	96	526	0	ENST00000281708.4:c.2001dup	p.Ser668GlufsTer26	p.S668Efs*26	ENST00000281708	NM_033632.3	667	-/G																																																																															
RAD50	10111	MSKCC	GRCh37	5	131924382	131924382	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757836195		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	72	273	0	ENST00000265335.6:c.1055G>A	p.Arg352His	p.R352H	ENST00000265335		352	cGt/cAt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149499105	149499105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	109	461	0	ENST00000261799.4:c.2723C>A	p.Pro908His	p.P908H	ENST00000261799	NM_002609.3	908	cCc/cAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56176539	56176539	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs753037944		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	92	382	0	ENST00000399503.3:c.2089C>T	p.Arg697Cys	p.R697C	ENST00000399503	NM_005921.1	697	Cgc/Tgc																																																																															
MET	4233	MSKCC	GRCh37	7	116339422	116339422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	127	444	0	ENST00000397752.3:c.284G>A	p.Cys95Tyr	p.C95Y	ENST00000397752	NM_000245.2	95	tGt/tAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	97	355	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
BRAF	673	MSKCC	GRCh37	7	140482926	140482927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs777474487		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	113	529	1	ENST00000288602.6:c.1208dup	p.Ala404CysfsTer9	p.A404Cfs*9	ENST00000288602	NM_004333.4	403	cct/ccCt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741395	145741395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368979398		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			824	179	606	0	ENST00000428558.2:c.1108C>T	p.Arg370Cys	p.R370C	ENST00000428558	NM_004260.3	370	Cgt/Tgt																																																																															
LYN	4067	MSKCC	GRCh37	8	56922580	56922580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	119	448	0	ENST00000519728.1:c.1450G>A	p.Ala484Thr	p.A484T	ENST00000519728	NM_002350.3	484	Gca/Aca																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992720	68992721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs774202059		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	96	404	2	ENST00000288368.4:c.1693dup	p.Ser565PhefsTer3	p.S565Ffs*3	ENST00000288368	NM_024870.2	562	cgt/cgTt																																																																															
ATRX	546	MSKCC	GRCh37	X	76938088	76938089	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	103	447	0	ENST00000373344.5:c.2658_2659dup	p.Thr887ArgfsTer19	p.T887Rfs*19	ENST00000373344	NM_000489.3	887	act/aGAct																																																																															
ATM	472	MSKCC	GRCh37	11	108115666	108115666	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	120	414	0	ENST00000278616.4:c.814A>G	p.Asn272Asp	p.N272D	ENST00000278616	NM_000051.3	272	Aat/Gat																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342442	118342442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	91	412	0	ENST00000534358.1:c.568C>A	p.Leu190Ile	p.L190I	ENST00000534358	NM_005933.3	190	Ctc/Atc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575097	64575097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760289964		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	146	548	0	ENST00000337652.1:c.725C>T	p.Ala242Val	p.A242V	ENST00000337652	NM_130803.2	242	gCg/gTg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99478577	99478577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	98	413	0	ENST00000268035.6:c.3219G>T	p.Gln1073His	p.Q1073H	ENST00000268035	NM_000875.3	1073	caG/caT																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14022033	14022033	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs773444862		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	48	380	0	ENST00000311895.7:c.733C>A	p.Pro245Thr	p.P245T	ENST00000311895	NM_005236.2	245	Cca/Aca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829548	72829548	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	113	466	0	ENST00000268489.5:c.7033A>G	p.Lys2345Glu	p.K2345E	ENST00000268489	NM_006885.3	2345	Aag/Gag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357492	89357492	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs778287566		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	36	472	0	ENST00000301030.4:c.326A>G	p.Tyr109Cys	p.Y109C	ENST00000301030	NM_001256183.1	109	tAc/tGc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492898	56492898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	149	409	0	ENST00000407977.2:c.41C>T	p.Pro14Leu	p.P14L	ENST00000407977		14	cCc/cTc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117846	70117846	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	137	560	0	ENST00000245479.2:c.314T>G	p.Val105Gly	p.V105G	ENST00000245479	NM_000346.3	105	gTc/gGc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288448	15288448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	102	392	0	ENST00000263388.2:c.4291C>A	p.Leu1431Met	p.L1431M	ENST00000263388	NM_000435.2	1431	Ctg/Atg																																																																															
CIC	23152	MSKCC	GRCh37	19	42796544	42796544	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	106	537	0	ENST00000575354.2:c.3101C>A	p.Pro1034His	p.P1034H	ENST00000575354	NM_015125.3	1034	cCc/cAc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198274715	198274715	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	115	398	0	ENST00000335508.6:c.683C>A	p.Pro228His	p.P228H	ENST00000335508	NM_012433.2	228	cCt/cAt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25458589	25458589	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	135	370	0	ENST00000264709.3:c.2584A>C	p.Thr862Pro	p.T862P	ENST00000264709	NM_175629.2	862	Act/Cct																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445268	29445268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	120	466	0	ENST00000544604.2:c.1099C>T	p.His367Tyr	p.H367Y	ENST00000544604	NM_001206998.1	367	Cat/Tat																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562568	176562568	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	155	508	0	ENST00000439151.2:c.464A>T	p.Asn155Ile	p.N155I	ENST00000439151	NM_022455.4	155	aAt/aTt																																																																															
TRIP13	9319	MSKCC	GRCh37	5	900644	900644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	120	339	0	ENST00000166345.3:c.424G>A	p.Asp142Asn	p.D142N	ENST00000166345	NM_004237.3	142	Gat/Aat																																																																															
ROS1	6098	MSKCC	GRCh37	6	117663631	117663631	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	58	315	0	ENST00000368508.3:c.4601del	p.Asn1534IlefsTer69	p.N1534Ifs*69	ENST00000368508	NM_002944.2	1534	aAt/at																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675500	30675514	+	inframe_deletion	In_Frame_Del	DEL	CTCTGGCTCCCCTCT	CTCTGGCTCCCCTCT	-			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	122	483	0	ENST00000376406.3:c.2842_2856del	p.Arg948_Glu952del	p.R948_E952del	ENST00000376406	NM_014641.2	948	AGAGGGGAGCCAGAG/-																																																																															
HGF	3082	MSKCC	GRCh37	7	81392090	81392090	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs974665951		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	90	350	0	ENST00000222390.5:c.187A>G	p.Lys63Glu	p.K63E	ENST00000222390	NM_000601.4	63	Aaa/Gaa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38186987	38186987	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	129	419	0	ENST00000317025.8:c.1490T>C	p.Met497Thr	p.M497T	ENST00000317025	NM_023034.1	497	aTg/aCg																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15840970	15840970	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1172264049		P-0080519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	103	425	0	ENST00000307771.7:c.1054C>T	p.Arg352Trp	p.R352W	ENST00000307771	NM_005089.3	352	Cgg/Tgg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163318754	163318755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	34	380	0	ENST00000271452.3:c.1150dup	p.Arg384LysfsTer6	p.R384Kfs*6	ENST00000271452	NM_145697.2	382	gaa/gAaa																																																																															
PARP1	142	MSKCC	GRCh37	1	226567646	226567647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1159330096		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	79	498	1	ENST00000366794.5:c.1519dup	p.Ser507LysfsTer14	p.S507Kfs*14	ENST00000366794	NM_001618.3	507	agc/aAgc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074276	8074276	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	79	445	0	ENST00000377482.5:c.383del	p.Pro128LeufsTer3	p.P128Lfs*3	ENST00000377482	NM_018948.3	128	cCt/ct																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	43	291	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594882	47594883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs756343868		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	75	467	3	ENST00000395288.2:c.1156dup	p.Glu386GlyfsTer4	p.E386Gfs*4	ENST00000395288	NM_016506.5	386	gag/gGag																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	94	377	3	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434638	110434638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	64	442	0	ENST00000375856.3:c.3763G>A	p.Ala1255Thr	p.A1255T	ENST00000375856	NM_003749.2	1255	Gcc/Acc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964077	28964077	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	62	397	4	ENST00000282397.4:c.1825del	p.Met609TrpfsTer16	p.M609Wfs*16	ENST00000282397	NM_002019.4	609	Atg/tg																																																																															
USP8	9101	MSKCC	GRCh37	15	50733661	50733661	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	19	324	2	ENST00000307179.4:c.226del	p.Arg76AspfsTer36	p.R76Dfs*36	ENST00000307179		74	Aaa/aa																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	55	451	3	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99482535	99482535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	70	431	0	ENST00000268035.6:c.3403G>A	p.Asp1135Asn	p.D1135N	ENST00000268035	NM_000875.3	1135	Gac/Aac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762108866		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	67	454	3	ENST00000268489.5:c.10215dup	p.Gly3406ArgfsTer25	p.G3406Rfs*25	ENST00000268489	NM_006885.3	3405	-/C																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346158	89346158	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	59	483	2	ENST00000301030.4:c.6792del	p.Ala2265ProfsTer72	p.A2265Pfs*72	ENST00000301030	NM_001256183.1	2264	ccC/cc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	92	413	1	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883240	37883240	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749539903		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	66	364	0	ENST00000269571.5:c.3143G>A	p.Arg1048His	p.R1048H	ENST00000269571		1048	cGc/cAc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs758630849		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	52	414	0	ENST00000305921.3:c.1349del	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256769	19256769	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	56	365	2	ENST00000162023.5:c.944del	p.Pro315GlnfsTer?	p.P315Qfs*?	ENST00000162023		315	cCa/ca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	54	479	2	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274304	5274304	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	83	387	1	ENST00000357368.4:c.143del	p.Gly48ValfsTer17	p.G48Vfs*17	ENST00000357368	NM_002850.3	48	gGt/gt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523009	25523009	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	36	352	0	ENST00000264709.3:c.176del	p.Pro59ArgfsTer13	p.P59Rfs*13	ENST00000264709	NM_175629.2	59	cCg/cg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385177	41385177	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201332786		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	63	348	0	ENST00000373198.4:c.784G>A	p.Val262Ile	p.V262I	ENST00000373198	NM_133170.3	262	Gtc/Atc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164486	36164486	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	55	345	0	ENST00000300305.3:c.1389del	p.Thr464ProfsTer130	p.T464Pfs*130	ENST00000300305		463	ccC/cc																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22221709	22221714	+	inframe_deletion	In_Frame_Del	DEL	CCGCCG	CCGCCG	-	rs888946347		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	33	184	0	ENST00000215832.6:c.17_22del	p.Ala6_Ala7del	p.A6_A7del	ENST00000215832	NM_002745.4	6	gCGGCGGgc/ggc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	90	342	7	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	45	381	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	143	473	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	90	444	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540104	187540105	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	69	408	0	ENST00000441802.2:c.7635_7636del	p.Gly2546ThrfsTer9	p.G2546Tfs*9	ENST00000441802	NM_005245.3	2545	agAGga/agga																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980558	1980559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	50	484	0	ENST00000382895.3:c.4027_4028dup	p.Glu1344GlnfsTer49	p.E1344Qfs*49	ENST00000382895	NM_133330.2	1340	-/CC																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047659	180047659	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1006377301		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	79	454	1	ENST00000261937.6:c.2356G>A	p.Ala786Thr	p.A786T	ENST00000261937	NM_182925.4	786	Gct/Act																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	34	340	1	ENST00000303115.3:c.361del	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	80	460	3	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	46	383	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265404	152265404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	67	438	0	ENST00000206249.3:c.857T>C	p.Met286Thr	p.M286T	ENST00000206249	NM_000125.3	286	aTg/aCg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099426	157099427	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAG	rs1295097336		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	43	485	0	ENST00000346085.5:c.384_386dup	p.Gln131dup	p.Q131dup	ENST00000346085	NM_020732.3	131	-/CAG																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165216	32165216	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs767972771		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	69	456	0	ENST00000375023.3:c.4912del	p.Leu1638CysfsTer68	p.L1638Cfs*68	ENST00000375023	NM_004557.3	1638	Ctg/tg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508499	106508499	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752602335		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	52	312	0	ENST00000359195.3:c.493G>A	p.Val165Ile	p.V165I	ENST00000359195	NM_002649.2	165	Gtc/Atc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390736	139390736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	72	577	0	ENST00000277541.6:c.7455del	p.Ser2486ArgfsTer103	p.S2486Rfs*103	ENST00000277541	NM_017617.3	2485	ccC/cc																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316339	14316339	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	50	393	0	ENST00000256196.4:c.266T>C	p.Phe89Ser	p.F89S	ENST00000256196		89	tTc/tCc																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945094	31945094	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771332167		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	50	395	0	ENST00000340398.3:c.7C>T	p.Arg3Ter	p.R3*	ENST00000340398	NM_001013699.2	3	Cga/Tga																																																																															
GLI1	2735	MSKCC	GRCh37	12	57857540	57857540	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	58	347	0	ENST00000228682.2:c.69del	p.Ser24ValfsTer54	p.S24Vfs*54	ENST00000228682	NM_005269.2	22	ctC/ct																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954271	32954271	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	58	405	0	ENST00000380152.3:c.9245T>C	p.Val3082Ala	p.V3082A	ENST00000380152		3082	gTg/gCg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32969055	32969056	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	60	397	0	ENST00000380152.3:c.9490_9491dup	p.Asn3164LysfsTer54	p.N3164Kfs*54	ENST00000380152		3162	-/AA																																																																															
DICER1	23405	MSKCC	GRCh37	14	95557703	95557703	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	71	318	0	ENST00000343455.3:c.5365-1G>A		p.X1789_splice	ENST00000343455	NM_177438.2	1789																																																																																
TSC2	7249	MSKCC	GRCh37	16	2129638	2129638	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369536711		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	59	470	0	ENST00000219476.3:c.3365G>A	p.Arg1122His	p.R1122H	ENST00000219476	NM_000548.3	1122	cGt/cAt																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679641	33679641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	81	430	0	ENST00000308377.4:c.2440A>G	p.Ser814Gly	p.S814G	ENST00000308377	NM_152270.3	814	Agc/Ggc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246473	41246473	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767666190		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	89	480	0	ENST00000357654.3:c.1075C>T	p.Pro359Ser	p.P359S	ENST00000357654	NM_007294.3	359	Cca/Tca																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098501	11098501	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756474511		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	78	511	0	ENST00000344626.4:c.1019C>T	p.Ala340Val	p.A340V	ENST00000344626	NM_003072.3	340	gCg/gTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288886	15288886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	38	336	1	ENST00000263388.2:c.3853C>T	p.Arg1285Cys	p.R1285C	ENST00000263388	NM_000435.2	1285	Cgt/Tgt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47639601	47639601	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	44	361	0	ENST00000233146.2:c.697del	p.Ser233ProfsTer13	p.S233Pfs*13	ENST00000233146	NM_000251.2	232	Ttt/tt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46281790	46281790	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	56	397	0	ENST00000371998.3:c.4237T>A	p.Ser1413Thr	p.S1413T	ENST00000371998		1413	Tct/Act																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523730	176523731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1397653278		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	61	417	0	ENST00000292408.4:c.2147dup	p.Glu717ArgfsTer8	p.E717Rfs*8	ENST00000292408	NM_213647.1	714	tgc/tgCc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522284	157522284	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1449208173		P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	28	450	0	ENST00000346085.5:c.4556G>A	p.Arg1519His	p.R1519H	ENST00000346085	NM_020732.3	1519	cGt/cAt																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80430540	80430541	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0080530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	41	275	0	ENST00000286548.4:c.467_468del	p.Ser156TyrfsTer6	p.S156Yfs*6	ENST00000286548	NM_002072.3	156	tCT/t																																																																															
MAD2L2	10459	MSKCC	GRCh37	1	11736105	11736105	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	50	362	0	ENST00000235310.3:c.425del	p.Pro142GlnfsTer45	p.P142Qfs*45	ENST00000235310		142	cCa/ca																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	54	291	2	ENST00000262741.5:c.883del	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46740379	46740379	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs550980888		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	31	350	1	ENST00000371975.4:c.1859G>A	p.Arg620His	p.R620H	ENST00000371975	NM_003579.3	620	cGc/cAc																																																																															
JUN	3725	MSKCC	GRCh37	1	59248011	59248011	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	72	473	0	ENST00000371222.2:c.732del	p.Ile245SerfsTer16	p.I245Sfs*16	ENST00000371222	NM_002228.3	244	ccC/cc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	53	403	0	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195395	102195395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762397304		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	69	410	0	ENST00000263464.3:c.155G>A	p.Arg52His	p.R52H	ENST00000263464	NM_001165.4	52	cGt/cAt																																																																															
ATM	472	MSKCC	GRCh37	11	108114816	108114817	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	38	280	0	ENST00000278616.4:c.640dup	p.Ser214PhefsTer40	p.S214Ffs*40	ENST00000278616	NM_000051.3	211	-/T																																																																															
SESN3	143686	MSKCC	GRCh37	11	94922977	94922977	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	24	351	0	ENST00000536441.1:c.491A>G	p.His164Arg	p.H164R	ENST00000536441	NM_144665.3	164	cAt/cGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112383	115112383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	36	432	0	ENST00000257566.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000257566	NM_016569.3	453	Gag/Aag																																																																															
POLE	5426	MSKCC	GRCh37	12	133257836	133257836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	32	390	0	ENST00000320574.5:c.92C>T	p.Ala31Val	p.A31V	ENST00000320574	NM_006231.2	31	gCa/gTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425051	49425051	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	53	446	0	ENST00000301067.7:c.13437del	p.Ser4480ProfsTer39	p.S4480Pfs*39	ENST00000301067	NM_003482.3	4479	ggG/gg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441816	49441816	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	30	337	0	ENST00000301067.7:c.4168del	p.Ala1390GlnfsTer27	p.A1390Qfs*27	ENST00000301067	NM_003482.3	1390	Gca/ca																																																																															
KDM5A	5927	MSKCC	GRCh37	12	498235	498235	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	45	292	0	ENST00000399788.2:c.23del	p.Gly8AlafsTer58	p.G8Afs*58	ENST00000399788	NM_001042603.1	8	gGc/gc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864218	57864218	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	79	513	2	ENST00000228682.2:c.1700del	p.Pro567LeufsTer46	p.P567Lfs*46	ENST00000228682	NM_005269.2	565	ttC/tt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524567	103524568	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs759551120		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	27	331	1	ENST00000355739.4:c.2705dup	p.Asn902LysfsTer7	p.N902Kfs*7	ENST00000355739	NM_000123.3	900	caa/cAaa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21565482	21565482	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	59	465	0	ENST00000382592.4:c.404A>G	p.Tyr135Cys	p.Y135C	ENST00000382592	NM_014572.2	135	tAc/tGc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911443	32911443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	27	391	0	ENST00000380152.3:c.2957del	p.Asn986IlefsTer5	p.N986Ifs*5	ENST00000380152		984	gAa/ga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937317	32937317	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	53	305	0	ENST00000380152.3:c.7978T>A	p.Tyr2660Asn	p.Y2660N	ENST00000380152		2660	Tat/Aat																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99442809	99442809	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	43	344	0	ENST00000268035.6:c.1211del	p.Asn404ThrfsTer6	p.N404Tfs*6	ENST00000268035	NM_000875.3	402	ctA/ct																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349090	11349090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	55	331	0	ENST00000332029.2:c.246del	p.Leu84Ter	p.L84*	ENST00000332029	NM_003745.1	82	ggG/gg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3842047	3842047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	63	324	0	ENST00000262367.5:c.1265G>A	p.Cys422Tyr	p.C422Y	ENST00000262367	NM_004380.2	422	tGc/tAc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67663406	67663406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775874494		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	66	332	0	ENST00000264010.4:c.1807C>T	p.Arg603Cys	p.R603C	ENST00000264010	NM_006565.3	603	Cgc/Tgc																																																																															
CDH1	999	MSKCC	GRCh37	16	68853205	68853205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	49	365	0	ENST00000261769.5:c.1588G>A	p.Ala530Thr	p.A530T	ENST00000261769	NM_004360.3	530	Gcc/Acc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	34	484	1	ENST00000268489.5:c.5677_5678del	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346783	89346783	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	20	409	0	ENST00000301030.4:c.6167A>G	p.Tyr2056Cys	p.Y2056C	ENST00000301030	NM_001256183.1	2056	tAc/tGc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41234422	41234422	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	67	335	0	ENST00000357654.3:c.4356del	p.Ala1453GlnfsTer3	p.A1453Qfs*3	ENST00000357654	NM_007294.3	1452	aaA/aa																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805714	46805714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	79	428	0	ENST00000290295.7:c.242G>A	p.Gly81Asp	p.G81D	ENST00000290295	NM_006361.5	81	gGt/gAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	105	547	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435162	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	105	546	1	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/gGgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	76	470	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39535279	39535279	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	32	353	0	ENST00000262039.4:c.23A>G	p.His8Arg	p.H8R	ENST00000262039	NM_002647.2	8	cAc/cGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591931	48591931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	56	421	0	ENST00000342988.3:c.1094G>A	p.Gly365Asp	p.G365D	ENST00000342988	NM_005359.5	365	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603148	48603148	+	splice_donor_variant	Splice_Site	SNP	T	T	C	rs1060500740		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	66	285	0	ENST00000342988.3:c.1447+2T>C		p.X483_splice	ENST00000342988	NM_005359.5	483																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15288710	15288710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	17	216	1	ENST00000263388.2:c.4029del	p.Cys1344ValfsTer76	p.C1344Vfs*76	ENST00000263388	NM_000435.2	1343	ccC/cc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376248	15376248	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	21	321	3	ENST00000263377.2:c.766del	p.Gln256SerfsTer27	p.Q256Sfs*27	ENST00000263377	NM_058243.2	256	Cag/ag																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18280004	18280004	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	66	327	0	ENST00000222254.8:c.2087A>G	p.Tyr696Cys	p.Y696C	ENST00000222254	NM_005027.3	696	tAc/tGc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18960942	18960942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	70	365	0	ENST00000262803.5:c.520G>A	p.Gly174Arg	p.G174R	ENST00000262803	NM_002911.3	174	Ggg/Agg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218383	36218383	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	44	397	0	ENST00000222270.7:c.4162T>C	p.Tyr1388His	p.Y1388H	ENST00000222270	NM_014727.1	1388	Tac/Cac																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	72	521	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
CIC	23152	MSKCC	GRCh37	19	42794627	42794627	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	50	368	0	ENST00000575354.2:c.1711del	p.Leu571TyrfsTer157	p.L571Yfs*157	ENST00000575354	NM_015125.3	569	ggC/gg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223228	5223228	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1224185745		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	35	392	0	ENST00000357368.4:c.2575G>A	p.Ala859Thr	p.A859T	ENST00000357368	NM_002850.3	859	Gcg/Acg																																																																															
INSR	3643	MSKCC	GRCh37	19	7119586	7119586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	35	345	0	ENST00000302850.5:c.3668G>A	p.Gly1223Asp	p.G1223D	ENST00000302850	NM_000208.2	1223	gGc/gAc																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881689	111881689	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756773831		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	58	363	0	ENST00000393256.3:c.367G>A	p.Ala123Thr	p.A123T	ENST00000393256	NM_006538.4	123	Gcc/Acc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190660565	190660565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	60	339	0	ENST00000441310.2:c.203T>C	p.Val68Ala	p.V68A	ENST00000441310	NM_000534.4	68	gTa/gCa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306677	41306677	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	36	388	0	ENST00000373198.4:c.982C>A	p.Arg328Ser	p.R328S	ENST00000373198	NM_133170.3	328	Cgc/Agc																																																																															
ERG	2078	MSKCC	GRCh37	21	39817414	39817414	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs542019196		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	34	432	0	ENST00000288319.7:c.149G>A	p.Arg50His	p.R50H	ENST00000288319	NM_182918.3	50	cGc/cAc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279864	29279864	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	20	99	0	ENST00000544604.2:c.110T>C	p.Leu37Pro	p.L37P	ENST00000544604	NM_001206998.1	37	cTg/cCg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445208	29445209	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	54	404	0	ENST00000544604.2:c.1046_1047del	p.Val349GlyfsTer117	p.V349Gfs*117	ENST00000544604	NM_001206998.1	347	GTg/g																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119631641	119631641	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	29	338	0	ENST00000316626.5:c.625C>T	p.Arg209Ter	p.R209*	ENST00000316626		209	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	48	260	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	37	372	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517815	187517815	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	66	401	0	ENST00000441802.2:c.12879del	p.His4293GlnfsTer56	p.H4293Qfs*56	ENST00000441802	NM_005245.3	4293	caC/ca																																																																															
REST	5978	MSKCC	GRCh37	4	57797807	57797807	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747423176		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	62	410	0	ENST00000309042.7:c.2783C>T	p.Thr928Met	p.T928M	ENST00000309042	NM_005612.4	928	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112176083	112176083	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1315936931		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	32	453	0	ENST00000257430.4:c.4792G>A	p.Ala1598Thr	p.A1598T	ENST00000257430	NM_000038.5	1598	Gct/Act																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449475	149449475	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs576921324		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	69	363	0	ENST00000286301.3:c.1471G>A	p.Val491Met	p.V491M	ENST00000286301	NM_005211.3	491	Gtg/Atg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149456893	149456893	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3829986		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	68	473	1	ENST00000286301.3:c.835G>A	p.Val279Met	p.V279M	ENST00000286301	NM_005211.3	279	Gtg/Atg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520328	176520328	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200070761		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	22	331	0	ENST00000292408.4:c.1247G>A	p.Arg416Gln	p.R416Q	ENST00000292408	NM_213647.1	416	cGa/cAa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180045896	180045896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	74	417	0	ENST00000261937.6:c.2875C>T	p.Arg959Cys	p.R959C	ENST00000261937	NM_182925.4	959	Cgc/Tgc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	66	418	1	ENST00000261937.6:c.89del	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589592	67589592	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	37	284	0	ENST00000274335.5:c.1355A>G	p.Tyr452Cys	p.Y452C	ENST00000274335		452	tAt/tGt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672384	86672384	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	47	299	0	ENST00000274376.6:c.2184+2T>C		p.X728_splice	ENST00000274376	NM_002890.2	728																																																																																
HLA-A	3105	MSKCC	GRCh37	6	29910405	29910405	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	73	502	0	ENST00000376809.5:c.73+2T>C		p.X25_splice	ENST00000376809	NM_002116.7	25																																																																																
MET	4233	MSKCC	GRCh37	7	116397808	116397808	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	46	388	0	ENST00000397752.3:c.2086del	p.Thr696HisfsTer4	p.T696Hfs*4	ENST00000397752	NM_000245.2	694	ggA/gg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	36	336	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162945	38162945	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185811622		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	79	379	0	ENST00000317025.8:c.2261C>T	p.Ser754Leu	p.S754L	ENST00000317025	NM_023034.1	754	tCg/tTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390736	139390736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	91	488	0	ENST00000277541.6:c.7455del	p.Ser2486ArgfsTer103	p.S2486Rfs*103	ENST00000277541	NM_017617.3	2485	ccC/cc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44732910	44732910	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	11	129	0	ENST00000377967.4:c.117del	p.Ser40AlafsTer2	p.S40Afs*2	ENST00000377967	NM_021140.2	38	tCc/tc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652397	48652397	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	40	184	0	ENST00000376670.3:c.1073del	p.Pro358GlnfsTer74	p.P358Qfs*74	ENST00000376670	NM_002049.3	356	ggC/gg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120493433	120493433	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	73	395	0	ENST00000256646.2:c.2393A>G	p.Glu798Gly	p.E798G	ENST00000256646	NM_024408.3	798	gAa/gGa																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551544	150551544	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs756812136		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	84	404	0	ENST00000369026.2:c.463A>G	p.Ser155Gly	p.S155G	ENST00000369026	NM_021960.4	155	Agt/Ggt																																																																															
SDHC	6391	MSKCC	GRCh37	1	161293424	161293424	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	64	254	0	ENST00000367975.2:c.41T>G	p.Leu14Arg	p.L14R	ENST00000367975	NM_003001.3	14	cTc/cGc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206650021	206650021	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	72	382	0	ENST00000367120.3:c.541C>T	p.His181Tyr	p.H181Y	ENST00000367120	NM_014002.3	181	Cat/Tat																																																																															
AKT3	10000	MSKCC	GRCh37	1	243809301	243809301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	53	356	0	ENST00000263826.5:c.323G>A	p.Arg108Lys	p.R108K	ENST00000263826	NM_005465.4	108	aGa/aAa																																																																															
STK40	83931	MSKCC	GRCh37	1	36809817	36809817	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	29	426	0	ENST00000373129.3:c.788T>C	p.Val263Ala	p.V263A	ENST00000373129	NM_032017.1	263	gTg/gCg																																																																															
RET	5979	MSKCC	GRCh37	10	43608309	43608309	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	89	577	0	ENST00000355710.3:c.1657A>T	p.Arg553Trp	p.R553W	ENST00000355710	NM_020975.4	553	Agg/Tgg																																																																															
TET1	80312	MSKCC	GRCh37	10	70406178	70406178	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	40	425	0	ENST00000373644.4:c.3692A>G	p.Gln1231Arg	p.Q1231R	ENST00000373644	NM_030625.2	1231	cAa/cGa																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88678973	88678973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	11	132	0	ENST00000372037.3:c.913C>T	p.Leu305Phe	p.L305F	ENST00000372037	NM_004329.2	305	Ctc/Ttc																																																																															
ATM	472	MSKCC	GRCh37	11	108205734	108205734	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1292192410		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	37	311	0	ENST00000278616.4:c.8049A>G	p.Ile2683Met	p.I2683M	ENST00000278616	NM_000051.3	2683	atA/atG																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125497612	125497612	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	20	330	0	ENST00000428830.2:c.176A>G	p.Asn59Ser	p.N59S	ENST00000428830	NM_001114121.2	59	aAt/aGt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64128977	64128977	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	75	460	0	ENST00000334205.4:c.607T>C	p.Tyr203His	p.Y203H	ENST00000334205	NM_003942.2	203	Tac/Cac																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949128	71949128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	33	533	0	ENST00000298229.2:c.3595G>A	p.Ala1199Thr	p.A1199T	ENST00000298229	NM_001567.3	1199	Gca/Aca																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56480369	56480369	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	67	382	0	ENST00000267101.3:c.476A>G	p.Asp159Gly	p.D159G	ENST00000267101	NM_001982.3	159	gAc/gGc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56494876	56494876	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	46	372	0	ENST00000267101.3:c.3233G>T	p.Cys1078Phe	p.C1078F	ENST00000267101	NM_001982.3	1078	tGc/tTc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865599	57865599	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs762119826		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	60	479	0	ENST00000228682.2:c.3076T>C	p.Tyr1026His	p.Y1026H	ENST00000228682	NM_005269.2	1026	Tac/Cac																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103519169	103519169	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	29	315	0	ENST00000355739.4:c.2507A>G	p.Gln836Arg	p.Q836R	ENST00000355739	NM_000123.3	836	cAa/cGa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608488	28608488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	25	406	0	ENST00000241453.7:c.1654C>T	p.Leu552Phe	p.L552F	ENST00000241453	NM_004119.2	552	Ctc/Ttc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914688	32914688	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	31	405	0	ENST00000380152.3:c.6196G>C	p.Val2066Leu	p.V2066L	ENST00000380152		2066	Gtt/Ctt																																																																															
RB1	5925	MSKCC	GRCh37	13	49050871	49050871	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	42	306	0	ENST00000267163.4:c.2555T>C	p.Val852Ala	p.V852A	ENST00000267163	NM_000321.2	852	gTa/gCa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30095702	30095702	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	32	198	0	ENST00000331968.5:c.1786A>C	p.Ile596Leu	p.I596L	ENST00000331968	NM_002742.2	596	Att/Ctt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30108004	30108004	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	54	283	0	ENST00000331968.5:c.803A>G	p.Lys268Arg	p.K268R	ENST00000331968	NM_002742.2	268	aAa/aGa																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38591717	38591718	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	57	299	0	ENST00000299084.4:c.176_177insC	p.Ile60TyrfsTer18	p.I60Yfs*18	ENST00000299084	NM_152594.2	59	ttt/ttCt																																																																															
MGA	23269	MSKCC	GRCh37	15	42042028	42042028	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	43	435	0	ENST00000219905.7:c.6223A>G	p.Lys2075Glu	p.K2075E	ENST00000219905	NM_001164273.1	2075	Aag/Gag																																																																															
MGA	23269	MSKCC	GRCh37	15	42042293	42042293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	61	476	0	ENST00000219905.7:c.6488G>A	p.Cys2163Tyr	p.C2163Y	ENST00000219905	NM_001164273.1	2163	tGt/tAt																																																																															
CD276	80381	MSKCC	GRCh37	15	73996054	73996054	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	37	421	0	ENST00000318443.5:c.788A>G	p.Asp263Gly	p.D263G	ENST00000318443	NM_001024736.1	263	gAt/gGt																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14042200	14042200	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	26	375	0	ENST00000311895.7:c.2747A>G	p.Lys916Arg	p.K916R	ENST00000311895	NM_005236.2	916	aAg/aGg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226327	2226327	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755600713		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	83	472	0	ENST00000326181.6:c.1940C>T	p.Thr647Ile	p.T647I	ENST00000326181	NM_032271.2	647	aCc/aTc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641136	23641136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	33	426	0	ENST00000261584.4:c.2339G>A	p.Gly780Asp	p.G780D	ENST00000261584	NM_024675.3	780	gGc/gAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354441	354441	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs140421619		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	52	306	0	ENST00000262320.3:c.1117C>T	p.Arg373Cys	p.R373C	ENST00000262320	NM_003502.3	373	Cgc/Tgc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56871523	56871523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	59	308	0	ENST00000308159.5:c.1903G>A	p.Ala635Thr	p.A635T	ENST00000308159	NM_014669.4	635	Gct/Act																																																																															
CDH1	999	MSKCC	GRCh37	16	68856071	68856071	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	49	381	0	ENST00000261769.5:c.1879A>G	p.Thr627Ala	p.T627A	ENST00000261769	NM_004360.3	627	Aca/Gca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829299	72829299	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	57	396	0	ENST00000268489.5:c.7282G>T	p.Glu2428Ter	p.E2428*	ENST00000268489	NM_006885.3	2428	Gag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830418	72830418	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	39	272	0	ENST00000268489.5:c.6163C>A	p.Pro2055Thr	p.P2055T	ENST00000268489	NM_006885.3	2055	Ccg/Acg																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544267	86544267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	34	375	1	ENST00000262426.4:c.92C>T	p.Ser31Phe	p.S31F	ENST00000262426	NM_001451.2	31	tCc/tTc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357204	89357204	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1258046672		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	78	492	0	ENST00000301030.4:c.430A>G	p.Thr144Ala	p.T144A	ENST00000301030	NM_001256183.1	144	Aca/Gca																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687160	37687160	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	97	436	0	ENST00000447079.4:c.4064A>G	p.Glu1355Gly	p.E1355G	ENST00000447079	NM_015083.1	1355	gAa/gGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579370	7579370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	59	422	0	ENST00000269305.4:c.317G>A	p.Ser106Asn	p.S106N	ENST00000269305	NM_001126112.2	106	aGc/aAc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56400638	56400638	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	46	317	0	ENST00000348428.3:c.1232A>G	p.Tyr411Cys	p.Y411C	ENST00000348428	NM_006785.3	411	tAt/tGt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221957	1221957	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	41	334	0	ENST00000326873.7:c.872A>G	p.Glu291Gly	p.E291G	ENST00000326873	NM_000455.4	291	gAg/gGg																																																																															
CALR	811	MSKCC	GRCh37	19	13054682	13054682	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	29	378	0	ENST00000316448.5:c.1209A>T	p.Glu403Asp	p.E403D	ENST00000316448	NM_004343.3	403	gaA/gaT																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366993	15366993	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1459379960		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	116	468	0	ENST00000263377.2:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263377	NM_058243.2	545	Gaa/Aaa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222243	2222243	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1310466241		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	74	468	0	ENST00000398665.3:c.3075G>C	p.Lys1025Asn	p.K1025N	ENST00000398665	NM_032482.2	1025	aaG/aaC																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308423	30308423	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	69	353	0	ENST00000262643.3:c.437C>G	p.Ala146Gly	p.A146G	ENST00000262643	NM_001238.2	146	gCa/gGa																																																																															
CCNE1	898	MSKCC	GRCh37	19	30311631	30311631	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	56	255	0	ENST00000262643.3:c.485A>G	p.His162Arg	p.H162R	ENST00000262643	NM_001238.2	162	cAc/cGc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222896	36222896	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	100	444	0	ENST00000222270.7:c.5525A>G	p.Asp1842Gly	p.D1842G	ENST00000222270	NM_014727.1	1842	gAc/gGc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228011	36228011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	85	451	0	ENST00000222270.7:c.7397G>A	p.Gly2466Asp	p.G2466D	ENST00000222270	NM_014727.1	2466	gGc/gAc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868340	45868340	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	66	431	0	ENST00000391945.4:c.437A>G	p.Tyr146Cys	p.Y146C	ENST00000391945	NM_000400.3	146	tAc/tGc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424108	47424108	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	45	392	0	ENST00000404338.3:c.2176A>G	p.Ser726Gly	p.S726G	ENST00000404338	NM_004491.4	726	Agc/Ggc																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140387	50140387	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	53	334	0	ENST00000246792.3:c.154T>C	p.Ser52Pro	p.S52P	ENST00000246792	NM_006270.3	52	Tcc/Ccc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212472	5212472	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs771340725		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	71	402	0	ENST00000357368.4:c.4645C>A	p.Gln1549Lys	p.Q1549K	ENST00000357368	NM_002850.3	1549	Cag/Aag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222201	5222201	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	25	353	0	ENST00000357368.4:c.3134T>A	p.Ile1045Asn	p.I1045N	ENST00000357368	NM_002850.3	1045	aTc/aAc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158634696	158634696	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	70	378	0	ENST00000263640.3:c.490T>C	p.Tyr164His	p.Y164H	ENST00000263640	NM_001105.4	164	Tat/Cat																																																																															
BARD1	580	MSKCC	GRCh37	2	215632364	215632364	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	55	280	0	ENST00000260947.4:c.1410T>A	p.Asn470Lys	p.N470K	ENST00000260947	NM_000465.2	470	aaT/aaA																																																																															
MSH6	2956	MSKCC	GRCh37	2	48018112	48018112	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs758303780		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	85	425	0	ENST00000234420.5:c.307T>C	p.Tyr103His	p.Y103H	ENST00000234420	NM_000179.2	103	Tac/Cac																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026792	48026792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	71	452	0	ENST00000234420.5:c.1670G>A	p.Gly557Asp	p.G557D	ENST00000234420	NM_000179.2	557	gGt/gAt																																																																															
REL	5966	MSKCC	GRCh37	2	61121566	61121566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	22	319	0	ENST00000295025.8:c.188T>C	p.Ile63Thr	p.I63T	ENST00000295025	NM_002908.2	63	aTt/aCt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99163076	99163076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	50	277	0	ENST00000074304.5:c.1082G>A	p.Gly361Glu	p.G361E	ENST00000074304	NM_001134224.1	361	gGg/gAg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023085	31023085	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	78	439	0	ENST00000375687.4:c.2570T>C	p.Leu857Pro	p.L857P	ENST00000375687	NM_015338.5	857	cTg/cCg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023961	31023961	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs779916654		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	98	479	0	ENST00000375687.4:c.3446T>C	p.Met1149Thr	p.M1149T	ENST00000375687	NM_015338.5	1149	aTg/aCg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46276058	46276058	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	56	428	0	ENST00000371998.3:c.3494A>G	p.Asn1165Ser	p.N1165S	ENST00000371998		1165	aAc/aGc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57470690	57470690	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	55	328	0	ENST00000371085.3:c.163A>T	p.Thr55Ser	p.T55S	ENST00000371085	NM_000516.4	55	Acc/Tcc																																																																															
CRKL	1399	MSKCC	GRCh37	22	21272364	21272364	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	30	463	0	ENST00000354336.3:c.142T>C	p.Tyr48His	p.Y48H	ENST00000354336	NM_005207.3	48	Tat/Cat																																																																															
EP300	2033	MSKCC	GRCh37	22	41573690	41573690	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	80	427	1	ENST00000263253.7:c.5975A>G	p.Gln1992Arg	p.Q1992R	ENST00000263253	NM_001429.3	1992	cAg/cGg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12660022	12660022	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	58	314	0	ENST00000251849.4:c.199A>G	p.Arg67Gly	p.R67G	ENST00000251849	NM_002880.3	67	Aga/Gga																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200739	128200739	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	55	311	0	ENST00000341105.2:c.1066A>G	p.Thr356Ala	p.T356A	ENST00000341105	NM_032638.4	356	Acc/Gcc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665516	138665516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	25	281	0	ENST00000330315.3:c.49G>A	p.Ala17Thr	p.A17T	ENST00000330315	NM_023067.3	17	Gcc/Acc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169985778	169985778	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762292026		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	67	322	0	ENST00000295797.4:c.440G>A	p.Arg147His	p.R147H	ENST00000295797	NM_002740.5	147	cGt/cAt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430153	181430153	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	10	208	0	ENST00000325404.1:c.5A>G	p.Tyr2Cys	p.Y2C	ENST00000325404	NM_003106.3	2	tAc/tGc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799896	72799896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	62	314	0	ENST00000325599.8:c.1273G>A	p.Ala425Thr	p.A425T	ENST00000325599	NM_018130.2	425	Gca/Aca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629208	187629208	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	65	429	0	ENST00000441802.2:c.1774T>C	p.Ser592Pro	p.S592P	ENST00000441802	NM_005245.3	592	Tct/Cct																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747928	41747928	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	40	254	0	ENST00000226382.2:c.841A>G	p.Thr281Ala	p.T281A	ENST00000226382	NM_003924.3	281	Acc/Gcc																																																																															
KIT	3815	MSKCC	GRCh37	4	55524218	55524218	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753316557		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	60	334	0	ENST00000288135.5:c.37G>A	p.Val13Ile	p.V13I	ENST00000288135	NM_000222.2	13	Gtt/Att																																																																															
REST	5978	MSKCC	GRCh37	4	57796868	57796868	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	63	446	0	ENST00000309042.7:c.1844C>A	p.Pro615His	p.P615H	ENST00000309042	NM_005612.4	615	cCt/cAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213809	66213809	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1268873174		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	29	308	0	ENST00000273854.3:c.2621A>G	p.Tyr874Cys	p.Y874C	ENST00000273854	NM_004439.5	874	tAt/tGt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356158	66356158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	93	449	0	ENST00000273854.3:c.1339G>T	p.Val447Leu	p.V447L	ENST00000273854	NM_004439.5	447	Gtg/Ttg																																																																															
APC	324	MSKCC	GRCh37	5	112176426	112176426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	65	394	0	ENST00000257430.4:c.5135A>G	p.Glu1712Gly	p.E1712G	ENST00000257430	NM_000038.5	1712	gAa/gGa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131940563	131940563	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	27	301	0	ENST00000265335.6:c.2590A>G	p.Lys864Glu	p.K864E	ENST00000265335		864	Aaa/Gaa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512464	149512466	+	inframe_deletion	In_Frame_Del	DEL	GTA	GTA	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	91	437	0	ENST00000261799.4:c.974_976del	p.Leu325del	p.L325del	ENST00000261799	NM_002609.3	325	cTACaa/caa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950379	38950379	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	51	357	0	ENST00000357387.3:c.3571A>G	p.Thr1191Ala	p.T1191A	ENST00000357387	NM_152756.3	1191	Aca/Gca																																																																															
MSH3	4437	MSKCC	GRCh37	5	79974758	79974758	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1166928107		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	21	317	0	ENST00000265081.6:c.1186G>A	p.Ala396Thr	p.A396T	ENST00000265081	NM_002439.4	396	Gcc/Acc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564777	86564777	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767584883		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	61	489	0	ENST00000274376.6:c.509C>T	p.Ala170Val	p.A170V	ENST00000274376	NM_002890.2	170	gCc/gTc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672285	86672285	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	59	350	0	ENST00000274376.6:c.2087T>C	p.Ile696Thr	p.I696T	ENST00000274376	NM_002890.2	696	aTa/aCa																																																																															
FYN	2534	MSKCC	GRCh37	6	112024093	112024093	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	56	346	0	ENST00000368678.4:c.692A>G	p.Tyr231Cys	p.Y231C	ENST00000368678		231	tAc/tGc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710944	117710944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	73	367	0	ENST00000368508.3:c.1328G>A	p.Cys443Tyr	p.C443Y	ENST00000368508	NM_002944.2	443	tGt/tAt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157431682	157431682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	24	370	0	ENST00000346085.5:c.2358G>A	p.Met786Ile	p.M786I	ENST00000346085	NM_020732.3	786	atG/atA																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157525029	157525029	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	87	467	0	ENST00000346085.5:c.4924T>C	p.Ser1642Pro	p.S1642P	ENST00000346085	NM_020732.3	1642	Tcc/Ccc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528470	157528470	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	43	386	0	ENST00000346085.5:c.6195T>A	p.Asp2065Glu	p.D2065E	ENST00000346085	NM_020732.3	2065	gaT/gaA																																																																															
PARK2	5071	MSKCC	GRCh37	6	161807857	161807857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	55	320	0	ENST00000366898.1:c.1136C>T	p.Ala379Val	p.A379V	ENST00000366898	NM_004562.2	379	gCc/gTc																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402842	20402842	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	32	272	0	ENST00000346618.3:c.380del	p.Gly127AlafsTer12	p.G127Afs*12	ENST00000346618	NM_001949.4	127	Ggc/gc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056644	26056644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750600621		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	22	340	0	ENST00000343677.2:c.13G>A	p.Ala5Thr	p.A5T	ENST00000343677	NM_005319.3	5	Gct/Act																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679893	30679893	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	41	435	0	ENST00000376406.3:c.1826A>T	p.Glu609Val	p.E609V	ENST00000376406	NM_014641.2	609	gAg/gTg																																																																															
CCND3	896	MSKCC	GRCh37	6	41903701	41903701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	55	379	0	ENST00000372991.4:c.856G>A	p.Asp286Asn	p.D286N	ENST00000372991	NM_001760.3	286	Gat/Aat																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956608	93956608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	28	371	0	ENST00000369303.4:c.2628G>T	p.Glu876Asp	p.E876D	ENST00000369303	NM_004440.3	876	gaG/gaT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120855	94120855	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	46	331	0	ENST00000369303.4:c.196A>G	p.Thr66Ala	p.T66A	ENST00000369303	NM_004440.3	66	Acc/Gcc																																																																															
MET	4233	MSKCC	GRCh37	7	116403122	116403122	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs200633053		P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	44	350	0	ENST00000397752.3:c.2383A>G	p.Asn795Asp	p.N795D	ENST00000397752	NM_000245.2	795	Aat/Gat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151896397	151896397	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	48	368	0	ENST00000262189.6:c.4240T>C	p.Ser1414Pro	p.S1414P	ENST00000262189	NM_170606.2	1414	Tca/Cca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949748	151949748	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	61	337	0	ENST00000262189.6:c.1352A>T	p.His451Leu	p.H451L	ENST00000262189	NM_170606.2	451	cAc/cTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55223591	55223591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	48	361	0	ENST00000275493.2:c.958G>A	p.Glu320Lys	p.E320K	ENST00000275493	NM_005228.3	320	Gaa/Aaa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6042190	6042190	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	50	348	0	ENST00000265849.7:c.431T>C	p.Ile144Thr	p.I144T	ENST00000265849	NM_000535.5	144	aTc/aCc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141545635	141545635	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	61	384	0	ENST00000220592.5:c.2203A>G	p.Thr735Ala	p.T735A	ENST00000220592	NM_012154.3	735	Act/Gct																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205583	38205583	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	81	350	0	ENST00000317025.8:c.107A>G	p.Asn36Ser	p.N36S	ENST00000317025	NM_023034.1	36	aAc/aGc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38318613	38318613	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	65	277	0	ENST00000425967.3:c.11+1G>A		p.X4_splice	ENST00000425967	NM_001174067.1	4																																																																																
NBN	4683	MSKCC	GRCh37	8	90967725	90967725	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	41	269	0	ENST00000265433.3:c.1183A>G	p.Met395Val	p.M395V	ENST00000265433	NM_002485.4	395	Atg/Gtg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248195	110248195	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	56	322	0	ENST00000374672.4:c.1277A>G	p.Tyr426Cys	p.Y426C	ENST00000374672	NM_004235.4	426	tAc/tGc																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127916259	127916259	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	15	347	0	ENST00000373547.4:c.385T>C	p.Cys129Arg	p.C129R	ENST00000373547	NM_002721.4	129	Tgc/Cgc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300047	137300047	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	23	330	0	ENST00000481739.1:c.332del	p.Leu111ArgfsTer57	p.L111Rfs*57	ENST00000481739	NM_002957.4	111	cTg/cg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460409	8460409	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	21	302	0	ENST00000356435.5:c.3875+2T>C		p.X1292_splice	ENST00000356435		1292																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8507352	8507352	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	59	370	0	ENST00000356435.5:c.1626T>A	p.Asp542Glu	p.D542E	ENST00000356435		542	gaT/gaA																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152860029	152860029	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	61	174	0	ENST00000406277.2:c.399G>T	p.Gln133His	p.Q133H	ENST00000406277	NM_152274.4	133	caG/caT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410179	63410179	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	20	251	0	ENST00000330258.3:c.2988A>G	p.Ile996Met	p.I996M	ENST00000330258	NM_152424.3	996	atA/atG																																																																															
MED12	9968	MSKCC	GRCh37	X	70357621	70357621	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	52	210	0	ENST00000374080.3:c.5872G>T	p.Gly1958Cys	p.G1958C	ENST00000374080		1958	Ggc/Tgc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9783218	9783218	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs573872848		P-0080533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	60	350	0	ENST00000377346.4:c.2462G>A	p.Arg821His	p.R821H	ENST00000377346	NM_005026.3	821	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108122637	108122637	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	55	360	0	ENST00000278616.4:c.1681C>T	p.Gln561Ter	p.Q561*	ENST00000278616	NM_000051.3	561	Caa/Taa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117368	115117368	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775378442		P-0080533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	38	404	0	ENST00000257566.3:c.806G>A	p.Arg269Gln	p.R269Q	ENST00000257566	NM_016569.3	269	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0080533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	48	250	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SCG5	6447	MSKCC	GRCh37	15	32935962	32935962	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs750372565		P-0080533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	64	372	0	ENST00000300175.4:c.169C>T	p.Arg57Ter	p.R57*	ENST00000300175	NM_001144757.1	57	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119974	70120026	+	frameshift_variant	Frame_Shift_Del	DEL	GCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAGGCGCCGCC	GCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAGGCGCCGCC	-			P-0080533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	43	345	0	ENST00000245479.2:c.984_1036del	p.Ser330AlafsTer230	p.S330Afs*230	ENST00000245479	NM_000346.3	326	GCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAGGCGCCGCCg/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0080533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	76	404	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101086	41101086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776769442		P-0080533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	116	431	0	ENST00000373198.4:c.1270G>A	p.Val424Met	p.V424M	ENST00000373198	NM_133170.3	424	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	76	422	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591137	67591138	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGACCA			P-0080533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	71	373	0	ENST00000274335.5:c.1732_1737dup	p.Asp578_Gln579dup	p.D578_Q579dup	ENST00000274335		578	aga/agAGACCAa																																																																															
ATM	472	MSKCC	GRCh37	11	108192068	108192068	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	63	306	0	ENST00000278616.4:c.6493T>C	p.Ser2165Pro	p.S2165P	ENST00000278616	NM_000051.3	2165	Tct/Cct																																																																															
APC	324	MSKCC	GRCh37	5	112175004	112175011	+	frameshift_variant	Frame_Shift_Del	DEL	GTAGAAGT	GTAGAAGT	-			P-0080533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	63	328	0	ENST00000257430.4:c.3714_3721del	p.Ser1238ArgfsTer15	p.S1238Rfs*15	ENST00000257430	NM_000038.5	1238	aGTAGAAGT/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0080534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	132	426	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0080534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	52	336	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	96	249	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949090	71949090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	123	526	1	ENST00000298229.2:c.3557C>G	p.Pro1186Arg	p.P1186R	ENST00000298229	NM_001567.3	1186	cCg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0080534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	144	256	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59871059	59871059	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	72	267	0	ENST00000259008.2:c.1372G>C	p.Glu458Gln	p.E458Q	ENST00000259008	NM_032043.2	458	Gaa/Caa																																																																															
GAB2	9846	MSKCC	GRCh37	11	77938016	77938016	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs370569123		P-0080534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	94	429	2	ENST00000361507.4:c.702T>A	p.Asn234Lys	p.N234K	ENST00000361507	NM_080491.2	234	aaT/aaA																																																																															
APC	324	MSKCC	GRCh37	5	112175750	112175751	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTTTATTACAT			P-0080534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	72	460	1	ENST00000257430.4:c.4460_4470dup	p.Phe1491LeufsTer20	p.F1491Lfs*20	ENST00000257430	NM_000038.5	1487	act/aCTTTATTACATct																																																																															
STAG2	10735	MSKCC	GRCh37	X	123159745	123159745	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	33	289	0	ENST00000218089.9:c.100A>T	p.Asn34Tyr	p.N34Y	ENST00000218089	NM_001042749.1	34	Aac/Tac																																																																															
TOP1	7150	MSKCC	GRCh37	20	39741512	39741512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	111	380	0	ENST00000361337.2:c.1399T>C	p.Ser467Pro	p.S467P	ENST00000361337	NM_003286.2	467	Tcc/Ccc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0080535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	35	268	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577567	7577599	+	inframe_deletion	In_Frame_Del	DEL	ACACATGTAGTTGTAGTGGATGGTGGTACAGTC	ACACATGTAGTTGTAGTGGATGGTGGTACAGTC	-			P-0080535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	44	307	0	ENST00000269305.4:c.682_714del	p.Asp228_Cys238del	p.D228_C238del	ENST00000269305	NM_001126112.2	228	GACTGTACCACCATCCACTACAACTACATGTGT/-																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056572	26056573	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0080535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			815	87	363	0	ENST00000343677.2:c.84dup	p.Gly29TrpfsTer6	p.G29Wfs*6	ENST00000343677	NM_005319.3	28	-/T																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	111	349	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781288		P-0080546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	148	559	0	ENST00000269305.4:c.422G>T	p.Cys141Phe	p.C141F	ENST00000269305	NM_001126112.2	141	tGc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579365	7579365	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782461		P-0080546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	148	512	0	ENST00000269305.4:c.322G>A	p.Gly108Ser	p.G108S	ENST00000269305	NM_001126112.2	108	Ggt/Agt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0080548-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	18	325	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871183	12871183	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369871673		P-0080548-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	73	256	0	ENST00000228872.4:c.410C>T	p.Pro137Leu	p.P137L	ENST00000228872	NM_004064.3	137	cCg/cTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256528	16256528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080548-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	70	432	0	ENST00000375759.3:c.3793C>T	p.Arg1265Ter	p.R1265*	ENST00000375759	NM_015001.2	1265	Cga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048182	180048182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080548-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	45	400	0	ENST00000261937.6:c.2091G>A	p.Met697Ile	p.M697I	ENST00000261937	NM_182925.4	697	atG/atA																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442589	52442589	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080548-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	103	369	0	ENST00000460680.1:c.156G>T	p.Trp52Cys	p.W52C	ENST00000460680	NM_004656.3	52	tgG/tgT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577505	7577505	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	22	412	0	ENST00000269305.4:c.776A>T	p.Asp259Val	p.D259V	ENST00000269305	NM_001126112.2	259	gAc/gTc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281359	49281359	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764117879		P-0080551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	37	458	2	ENST00000282018.3:c.406C>T	p.Arg136Cys	p.R136C	ENST00000282018	NM_020377.2	136	Cgt/Tgt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11316114	11316114	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746557535		P-0080551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	29	386	0	ENST00000361445.4:c.640C>T	p.Arg214Cys	p.R214C	ENST00000361445	NM_004958.3	214	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	11	262	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0080555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	210	370	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175417	112175418	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0080555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			42	397	361	0	ENST00000257430.4:c.4127_4128del	p.Tyr1376CysfsTer9	p.Y1376Cfs*9	ENST00000257430	NM_000038.5	1376	TAt/t																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423598	88423598	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			36	418	312	0	ENST00000360948.2:c.2237A>C	p.Lys746Thr	p.K746T	ENST00000360948	NM_001012338.2	746	aAg/aCg																																																																															
HGF	3082	MSKCC	GRCh37	7	81381558	81381558	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773949476		P-0080555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	59	300	0	ENST00000222390.5:c.503G>A	p.Arg168Gln	p.R168Q	ENST00000222390	NM_000601.4	168	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0080555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	267	413	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
DCUN1D1	54165	MSKCC	GRCh37	3	182665064	182665064	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777859787		P-0080555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	154	295	0	ENST00000292782.4:c.662C>T	p.Thr221Met	p.T221M	ENST00000292782	NM_020640.2	221	aCg/aTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106196214	106196214	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777692532		P-0080555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			44	185	317	0	ENST00000380013.4:c.4547G>A	p.Arg1516Gln	p.R1516Q	ENST00000380013	NM_001127208.2	1516	cGa/cAa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15383716	15383716	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0080555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	255	390	0	ENST00000263377.2:c.195C>A	p.Tyr65Ter	p.Y65*	ENST00000263377	NM_058243.2	65	taC/taA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49415877	49415878	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0080555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	231	412	0	ENST00000301067.7:c.16469_16470del	p.Lys5490ArgfsTer21	p.K5490Rfs*21	ENST00000301067	NM_003482.3	5490	aAA/a																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521688	89521688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	207	395	0	ENST00000336596.2:c.2765G>T	p.Gly922Val	p.G922V	ENST00000336596	NM_005233.5	922	gGt/gTt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149439306	149439306	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758189628		P-0080555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	45	338	1	ENST00000286301.3:c.2089G>A	p.Val697Ile	p.V697I	ENST00000286301	NM_005211.3	697	Gtc/Atc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0080560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	13	266	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604749	48604749	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0080560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	41	389	0	ENST00000342988.3:c.1571G>A	p.Trp524Ter	p.W524*	ENST00000342988	NM_005359.5	524	tGg/tAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974696	21974699	+	frameshift_variant	Frame_Shift_Del	DEL	TAAC	TAAC	-			P-0080560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	26	363	0	ENST00000304494.5:c.128_131del	p.Ser43ThrfsTer9	p.S43Tfs*9	ENST00000304494	NM_000077.4	43	aGTTAc/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579330	7579331	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0080560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	36	415	0	ENST00000269305.4:c.356_357del	p.Ala119GlufsTer29	p.A119Efs*29	ENST00000269305	NM_001126112.2	119	gCC/g																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770626	40770626	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	27	354	0	ENST00000373198.4:c.2756A>C	p.Gln919Pro	p.Q919P	ENST00000373198	NM_133170.3	919	cAg/cCg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932620	39932621	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0080560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	35	268	0	ENST00000378444.4:c.1978dup	p.Tyr660LeufsTer5	p.Y660Lfs*5	ENST00000378444	NM_001123385.1	660	tac/tTac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0080570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	426	731	6	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	141	598	2	ENST00000257430.4:c.4473del	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281717	49281719	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-	rs774050943		P-0080570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1099	158	631	0	ENST00000282018.3:c.771_773del	p.Phe257del	p.F257del	ENST00000282018	NM_020377.2	255	aTCTtc/atc																																																																															
APC	324	MSKCC	GRCh37	5	112157643	112157643	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	82	425	0	ENST00000257430.4:c.1365del	p.Lys455AsnfsTer12	p.K455Nfs*12	ENST00000257430	NM_000038.5	455	Aaa/aa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	178	568	4	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	52	286	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	99	423	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	129	582	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	128	724	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
IGF1	3479	MSKCC	GRCh37	12	102869552	102869552	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766508915		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	71	504	0	ENST00000307046.8:c.89C>T	p.Ser30Leu	p.S30L	ENST00000307046	NM_001111285.1	30	tCg/tTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	66	668	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	85	611	0	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
SRC	6714	MSKCC	GRCh37	20	36028566	36028566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	72	534	0	ENST00000358208.4:c.908G>A	p.Gly303Asp	p.G303D	ENST00000358208		303	gGc/gAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5208036	5208036	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772956659		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	74	644	0	ENST00000357368.4:c.5675C>T	p.Thr1892Met	p.T1892M	ENST00000357368	NM_002850.3	1892	aCg/aTg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193099338	193099338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	121	401	0	ENST00000367435.3:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000367435	NM_024529.4	91	cGa/cAa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138920	64138920	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770200186		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	37	344	0	ENST00000334205.4:c.2287C>T	p.Arg763Cys	p.R763C	ENST00000334205	NM_003942.2	763	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	108	534	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	116	521	0	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244091	153244091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	63	591	0	ENST00000281708.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000281708	NM_033632.3	689	cGg/cAg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346338	73346338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	82	407	0	ENST00000377767.4:c.1462G>A	p.Asp488Asn	p.D488N	ENST00000377767	NM_014953.3	488	Gat/Aat																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	130	650	11	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560898	9560898	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767455314		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	94	586	0	ENST00000353224.5:c.884C>T	p.Pro295Leu	p.P295L	ENST00000353224	NM_177990.2	295	cCg/cTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831026	72831026	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs61737017		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	105	597	0	ENST00000268489.5:c.5555A>C	p.Gln1852Pro	p.Q1852P	ENST00000268489	NM_006885.3	1852	cAg/cCg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740467	58740467	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs773389405		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	90	520	0	ENST00000305921.3:c.1372C>T	p.Arg458Ter	p.R458*	ENST00000305921	NM_003620.3	458	Cga/Tga																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562345	21562345	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1204055851		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	61	626	0	ENST00000382592.4:c.1574G>A	p.Arg525His	p.R525H	ENST00000382592	NM_014572.2	525	cGc/cAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	95	648	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																															
PGR	5241	MSKCC	GRCh37	11	100999449	100999450	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs777896116		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	64	572	0	ENST00000325455.5:c.352_353del	p.Leu118ValfsTer65	p.L118Vfs*65	ENST00000325455	NM_001202474.3	118	CTg/g																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45422959	45422959	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	64	512	0	ENST00000262160.6:c.169C>T	p.Arg57Ter	p.R57*	ENST00000262160	NM_005901.5	57	Cga/Tga																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931471	131931471	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753002904		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	95	416	0	ENST00000265335.6:c.2176C>T	p.Arg726Cys	p.R726C	ENST00000265335		726	Cgt/Tgt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738714	145738714	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753386714		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	82	755	0	ENST00000428558.2:c.2350C>T	p.Arg784Trp	p.R784W	ENST00000428558	NM_004260.3	784	Cgg/Tgg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332409	70332409	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200477577		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	73	485	1	ENST00000373644.4:c.314C>T	p.Ala105Val	p.A105V	ENST00000373644	NM_030625.2	105	gCg/gTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55961059	55961059	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs530419081		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	80	467	0	ENST00000263923.4:c.2881C>T	p.Arg961Trp	p.R961W	ENST00000263923	NM_002253.2	961	Cgg/Tgg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576198	88576198	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768882070		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	92	505	0	ENST00000360948.2:c.1475C>T	p.Ser492Leu	p.S492L	ENST00000360948	NM_001012338.2	492	tCg/tTg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738518	145738518	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368611522		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	73	532	0	ENST00000428558.2:c.2467G>A	p.Glu823Lys	p.E823K	ENST00000428558	NM_004260.3	823	Gaa/Aaa																																																																															
MET	4233	MSKCC	GRCh37	7	116340177	116340177	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200074800		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	61	495	0	ENST00000397752.3:c.1039G>A	p.Ala347Thr	p.A347T	ENST00000397752	NM_000245.2	347	Gca/Aca																																																																															
EZH2	2146	MSKCC	GRCh37	7	148512084	148512084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	156	463	0	ENST00000320356.2:c.1594C>T	p.Arg532Trp	p.R532W	ENST00000320356	NM_004456.4	532	Cgg/Tgg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738814	145738814	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750304658		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	142	822	0	ENST00000428558.2:c.2251C>T	p.Arg751Trp	p.R751W	ENST00000428558	NM_004260.3	751	Cgg/Tgg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264357	30264357	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	45	404	2	ENST00000322652.5:c.92T>C	p.Val31Ala	p.V31A	ENST00000322652	NM_015355.2	31	gTg/gCg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376881	118376881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140200473		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	113	605	1	ENST00000534358.1:c.10274C>T	p.Ala3425Val	p.A3425V	ENST00000534358	NM_005933.3	3425	gCg/gTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15383645	15383645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	80	526	0	ENST00000263377.2:c.266C>T	p.Ala89Val	p.A89V	ENST00000263377	NM_058243.2	89	gCc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433995	49433995	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759516070		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	77	630	0	ENST00000301067.7:c.7558C>T	p.Arg2520Trp	p.R2520W	ENST00000301067	NM_003482.3	2520	Cgg/Tgg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646980	23646981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1060502767		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	103	543	1	ENST00000261584.4:c.886dup	p.Met296AsnfsTer7	p.M296Nfs*7	ENST00000261584	NM_024675.3	296	atg/aAtg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41226387	41226387	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28897691		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	63	494	0	ENST00000357654.3:c.4636G>A	p.Asp1546Asn	p.D1546N	ENST00000357654	NM_007294.3	1546	Gat/Aat																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349513	89349513	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150325340		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	102	608	0	ENST00000301030.4:c.3437C>T	p.Thr1146Met	p.T1146M	ENST00000301030	NM_001256183.1	1146	aCg/aTg																																																																															
MPL	4352	MSKCC	GRCh37	1	43804269	43804269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766638870		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	122	656	0	ENST00000372470.3:c.269G>A	p.Arg90Gln	p.R90Q	ENST00000372470	NM_005373.2	90	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178943755	178943755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200671228		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	94	373	0	ENST00000263967.3:c.2422C>T	p.Arg808Trp	p.R808W	ENST00000263967	NM_006218.2	808	Cgg/Tgg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162659	47162659	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752223546		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	98	494	0	ENST00000409792.3:c.3467G>A	p.Arg1156His	p.R1156H	ENST00000409792	NM_014159.6	1156	cGc/cAc																																																																															
XIAP	331	MSKCC	GRCh37	X	123019994	123019994	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	97	567	1	ENST00000355640.3:c.482A>G	p.Tyr161Cys	p.Y161C	ENST00000355640		161	tAt/tGt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399489	139399489	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1438164851		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	87	674	2	ENST00000277541.6:c.4654G>A	p.Ala1552Thr	p.A1552T	ENST00000277541	NM_017617.3	1552	Gcg/Acg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89825027	89825027	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773070418		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	118	592	0	ENST00000389301.3:c.2939C>T	p.Ala980Val	p.A980V	ENST00000389301	NM_000135.2	980	gCg/gTg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182213	99182213	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs984538193		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	79	506	1	ENST00000074304.5:c.2278G>A	p.Val760Ile	p.V760I	ENST00000074304	NM_001134224.1	760	Gtc/Atc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2131764	2131764	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776738338		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	86	645	0	ENST00000219476.3:c.3779C>T	p.Thr1260Met	p.T1260M	ENST00000219476	NM_000548.3	1260	aCg/aTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350876	89350876	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149939914		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	43	471	0	ENST00000301030.4:c.2074G>A	p.Asp692Asn	p.D692N	ENST00000301030	NM_001256183.1	692	Gac/Aac																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72881575	72881575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1040831506		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	102	393	0	ENST00000325599.8:c.544C>T	p.Arg182Ter	p.R182*	ENST00000325599	NM_018130.2	182	Cga/Tga																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170015104	170015104	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs762444412		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	103	396	0	ENST00000295797.4:c.1510C>T	p.Arg504Ter	p.R504*	ENST00000295797	NM_002740.5	504	Cga/Tga																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396824	139396824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1356199208		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	63	510	0	ENST00000277541.6:c.5284C>T	p.Arg1762Trp	p.R1762W	ENST00000277541	NM_017617.3	1762	Cgg/Tgg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131915589	131915589	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764784659		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	48	355	0	ENST00000265335.6:c.587G>A	p.Arg196His	p.R196H	ENST00000265335		196	cGt/cAt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661501	227661501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780995783		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	83	642	0	ENST00000305123.5:c.1954C>T	p.Arg652Cys	p.R652C	ENST00000305123	NM_005544.2	652	Cgc/Tgc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39617740	39617740	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765611552		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	92	443	0	ENST00000262039.4:c.1924C>T	p.Arg642Cys	p.R642C	ENST00000262039	NM_002647.2	642	Cgt/Tgt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946931	71946931	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1375254938		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	69	634	0	ENST00000298229.2:c.2780C>T	p.Pro927Leu	p.P927L	ENST00000298229	NM_001567.3	927	cCg/cTg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39278406	39278406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775052125		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	68	409	0	ENST00000402219.2:c.743G>A	p.Arg248His	p.R248H	ENST00000402219	NM_005633.3	248	cGc/cAc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125503111	125503111	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369248914		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	49	476	0	ENST00000428830.2:c.478C>T	p.Arg160Cys	p.R160C	ENST00000428830	NM_001114121.2	160	Cgt/Tgt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675426	30675426	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776398578		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	171	699	0	ENST00000376406.3:c.2930C>T	p.Pro977Leu	p.P977L	ENST00000376406	NM_014641.2	977	cCg/cTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033248	69033248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143386950		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	96	492	0	ENST00000288368.4:c.3688C>T	p.Arg1230Trp	p.R1230W	ENST00000288368	NM_024870.2	1230	Cgg/Tgg																																																																															
TERT	7015	MSKCC	GRCh37	5	1294339	1294339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	65	626	0	ENST00000310581.5:c.662C>T	p.Ala221Val	p.A221V	ENST00000310581	NM_198253.2	221	gCg/gTg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844801	156844801	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs764771898		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	162	787	0	ENST00000524377.1:c.1354+1G>A		p.X452_splice	ENST00000524377	NM_002529.3	452																																																																																
ERF	2077	MSKCC	GRCh37	19	42754607	42754607	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs914128913		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	80	591	0	ENST00000222329.4:c.133G>A	p.Val45Ile	p.V45I	ENST00000222329	NM_006494.2	45	Gtc/Atc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374487	118374487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	145	677	0	ENST00000534358.1:c.7880G>A	p.Arg2627His	p.R2627H	ENST00000534358	NM_005933.3	2627	cGt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431709	49431709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752428122		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	88	661	0	ENST00000301067.7:c.9430G>A	p.Ala3144Thr	p.A3144T	ENST00000301067	NM_003482.3	3144	Gca/Aca																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46597010	46597010	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759634197		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	104	425	0	ENST00000263734.3:c.824G>A	p.Arg275His	p.R275H	ENST00000263734	NM_001430.4	275	cGc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133226031	133226031	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781298285		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	61	532	0	ENST00000320574.5:c.3866G>A	p.Arg1289His	p.R1289H	ENST00000320574	NM_006231.2	1289	cGc/cAc																																																																															
ABL1	25	MSKCC	GRCh37	9	133730388	133730388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	53	462	0	ENST00000318560.5:c.454C>T	p.Arg152Cys	p.R152C	ENST00000318560	NM_005157.4	152	Cgt/Tgt																																																																															
SDHA	6389	MSKCC	GRCh37	5	231050	231050	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367721665		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	64	338	0	ENST00000264932.6:c.830C>T	p.Thr277Met	p.T277M	ENST00000264932	NM_004168.2	277	aCg/aTg																																																																															
AXL	558	MSKCC	GRCh37	19	41726690	41726690	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs962997099		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	74	531	0	ENST00000301178.4:c.235G>A	p.Ala79Thr	p.A79T	ENST00000301178	NM_021913.4	79	Gcg/Acg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	91	368	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144146	11144146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	17	581	0	ENST00000344626.4:c.3727C>T	p.Arg1243Trp	p.R1243W	ENST00000344626	NM_003072.3	1243	Cgg/Tgg																																																																															
AR	367	MSKCC	GRCh37	X	66765290	66765290	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777689173		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	64	574	1	ENST00000374690.3:c.302G>A	p.Arg101His	p.R101H	ENST00000374690	NM_000044.3	101	cGt/cAt																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423671	47423671	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376565594		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	104	557	0	ENST00000404338.3:c.1739G>A	p.Arg580Gln	p.R580Q	ENST00000404338	NM_004491.4	580	cGg/cAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829565	72829565	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1000233330		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	83	558	2	ENST00000268489.5:c.7016G>A	p.Arg2339His	p.R2339H	ENST00000268489	NM_006885.3	2339	cGc/cAc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63965731	63965731	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1229074476		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	56	567	0	ENST00000295900.6:c.640G>A	p.Ala214Thr	p.A214T	ENST00000295900	NM_000333.3	214	Gca/Aca																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265301	10265301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	96	632	0	ENST00000340748.4:c.1745G>A	p.Arg582Gln	p.R582Q	ENST00000340748		582	cGg/cAg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962789	2962789	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143049136		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	43	404	0	ENST00000396946.4:c.2119C>T	p.Arg707Cys	p.R707C	ENST00000396946	NM_032415.4	707	Cgt/Tgt																																																																															
LYN	4067	MSKCC	GRCh37	8	56854491	56854491	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769769478		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	113	432	0	ENST00000519728.1:c.73C>T	p.Arg25Cys	p.R25C	ENST00000519728	NM_002350.3	25	Cgt/Tgt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175958549	175958549	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1271141729		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	116	488	0	ENST00000367669.3:c.1796G>A	p.Arg599His	p.R599H	ENST00000367669	NM_022457.5	599	cGt/cAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993101	72993101	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	138	565	0	ENST00000268489.5:c.944A>C	p.Lys315Thr	p.K315T	ENST00000268489	NM_006885.3	315	aAa/aCa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56338973	56338973	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	34	456	0	ENST00000348428.3:c.98T>C	p.Leu33Pro	p.L33P	ENST00000348428	NM_006785.3	33	cTg/cCg																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1314871	1314871	+	downstream_gene_variant	3'Flank	SNP	C	C	T	rs377026508		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	77	522	0				ENST00000381566																																																																																		
BRD4	23476	MSKCC	GRCh37	19	15354137	15354137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768937468		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	48	439	0	ENST00000263377.2:c.2743G>A	p.Asp915Asn	p.D915N	ENST00000263377	NM_058243.2	915	Gat/Aat																																																																															
SLX4	84464	MSKCC	GRCh37	16	3656580	3656580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	135	580	0	ENST00000294008.3:c.655G>A	p.Ala219Thr	p.A219T	ENST00000294008	NM_032444.2	219	Gca/Aca																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128017011	128017011	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	95	579	0	ENST00000285398.2:c.2078T>A	p.Leu693His	p.L693H	ENST00000285398	NM_000122.1	693	cTc/cAc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746087	162746087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	130	593	0	ENST00000367921.3:c.2210G>A	p.Ser737Asn	p.S737N	ENST00000367921	NM_006182.2	737	aGt/aAt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441249	52441249	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	90	651	0	ENST00000460680.1:c.521T>C	p.Val174Ala	p.V174A	ENST00000460680	NM_004656.3	174	gTg/gCg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117718232	117718232	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777419401		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	94	499	0	ENST00000368508.3:c.625G>A	p.Asp209Asn	p.D209N	ENST00000368508	NM_002944.2	209	Gac/Aac																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198281538	198281538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	132	500	0	ENST00000335508.6:c.593G>A	p.Arg198Gln	p.R198Q	ENST00000335508	NM_012433.2	198	cGg/cAg																																																																															
ETV1	2115	MSKCC	GRCh37	7	14027711	14027711	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	31	381	0	ENST00000405192.2:c.133G>T	p.Glu45Ter	p.E45*	ENST00000405192	NM_001163147.1	45	Gaa/Taa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149434812	149434812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	54	440	0	ENST00000286301.3:c.2642C>T	p.Ala881Val	p.A881V	ENST00000286301	NM_005211.3	881	gCc/gTc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162828	38162828	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754800291		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	120	553	0	ENST00000317025.8:c.2378G>A	p.Arg793His	p.R793H	ENST00000317025	NM_023034.1	793	cGc/cAc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632557	3632557	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1031274414		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	89	616	1	ENST00000294008.3:c.5291C>T	p.Pro1764Leu	p.P1764L	ENST00000294008	NM_032444.2	1764	cCg/cTg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803058	32803058	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	98	552	0	ENST00000374899.4:c.818G>A	p.Arg273Gln	p.R273Q	ENST00000374899	NM_018833.2	273	cGa/cAa																																																																															
SDHB	6390	MSKCC	GRCh37	1	17355165	17355165	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	89	568	0	ENST00000375499.3:c.353A>G	p.Asp118Gly	p.D118G	ENST00000375499	NM_003000.2	118	gAc/gGc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65316510	65316510	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	94	499	0	ENST00000342505.4:c.1732A>T	p.Ile578Phe	p.I578F	ENST00000342505	NM_002227.2	578	Atc/Ttc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141595233	141595233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	91	470	0	ENST00000220592.5:c.200C>T	p.Pro67Leu	p.P67L	ENST00000220592	NM_012154.3	67	cCg/cTg																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969909	161969909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	70	449	0	ENST00000366898.1:c.1060G>T	p.Gly354Trp	p.G354W	ENST00000366898	NM_004562.2	354	Ggg/Tgg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62325731	62325731	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs201560152		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	55	369	0	ENST00000482936.1:c.2999C>T	p.Thr1000Met	p.T1000M	ENST00000482936		1000	aCg/aTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118392772	118392772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	35	558	0	ENST00000534358.1:c.11804G>A	p.Arg3935His	p.R3935H	ENST00000534358	NM_005933.3	3935	cGt/cAt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521848	157521848	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	134	555	0	ENST00000346085.5:c.4120C>G	p.Arg1374Gly	p.R1374G	ENST00000346085	NM_020732.3	1374	Cgc/Ggc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845615	72845615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	109	611	1	ENST00000268489.5:c.3725C>T	p.Ala1242Val	p.A1242V	ENST00000268489	NM_006885.3	1242	gCc/gTc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225346715	225346715	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	90	402	0	ENST00000264414.4:c.1923G>T	p.Gln641His	p.Q641H	ENST00000264414	NM_003590.4	641	caG/caT																																																																															
RET	5979	MSKCC	GRCh37	10	43597841	43597841	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1304848478		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	70	709	0	ENST00000355710.3:c.389C>T	p.Thr130Ile	p.T130I	ENST00000355710	NM_020975.4	130	aCa/aTa																																																																															
RAD51B	5890	MSKCC	GRCh37	14	69061244	69061244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	66	243	0	ENST00000487270.1:c.1079C>T	p.Ala360Val	p.A360V	ENST00000487270	NM_133509.3	360	gCt/gTt																																																																															
RIT1	6016	MSKCC	GRCh37	1	155870204	155870204	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764347644		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	91	466	0	ENST00000368323.3:c.635G>A	p.Arg212Gln	p.R212Q	ENST00000368323	NM_006912.5	212	cGg/cAg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45657004	45657004	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	113	595	0	ENST00000407780.3:c.152A>G	p.Tyr51Cys	p.Y51C	ENST00000407780	NM_001283052.1	51	tAc/tGc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67358572	67358573	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	86	614	0	ENST00000327367.4:c.81_82dup	p.Glu28GlyfsTer89	p.E28Gfs*89	ENST00000327367	NM_005902.3	27	gag/gaGGg																																																																															
SETD8	387893	MSKCC	GRCh37	12	123880971	123880971	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1433378503		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	106	412	0	ENST00000330479.4:c.589G>A	p.Glu197Lys	p.E197K	ENST00000330479	NM_020382.3	197	Gag/Aag																																																																															
MGA	23269	MSKCC	GRCh37	15	42042751	42042751	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs756340703		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	29	494	0	ENST00000219905.7:c.6946A>G	p.Ile2316Val	p.I2316V	ENST00000219905	NM_001164273.1	2316	Att/Gtt																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225599	26225599	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs556601521		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	141	771	1	ENST00000360408.1:c.217C>T	p.Arg73Ter	p.R73*	ENST00000360408	NM_003532.2	73	Cga/Tga																																																																															
CDK6	1021	MSKCC	GRCh37	7	92300750	92300750	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	88	389	0	ENST00000265734.4:c.637T>A	p.Phe213Ile	p.F213I	ENST00000265734	NM_001259.6	213	Ttt/Att																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716310	52716310	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1369485535		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	88	573	0	ENST00000322088.6:c.754G>A	p.Ala252Thr	p.A252T	ENST00000322088	NM_014225.5	252	Gct/Act																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085929	16085929	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	93	513	0	ENST00000281043.3:c.1105A>C	p.Ser369Arg	p.S369R	ENST00000281043	NM_005378.4	369	Agc/Cgc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2126556	2126556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	88	571	0	ENST00000219476.3:c.2807G>A	p.Arg936Gln	p.R936Q	ENST00000219476	NM_000548.3	936	cGg/cAg																																																																															
WT1	7490	MSKCC	GRCh37	11	32450052	32450052	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1352932484		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	71	606	0	ENST00000332351.3:c.760G>T	p.Gly254Cys	p.G254C	ENST00000332351	NM_024426.4	254	Ggc/Tgc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662514	227662514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	65	627	0	ENST00000305123.5:c.941C>T	p.Ala314Val	p.A314V	ENST00000305123	NM_005544.2	314	gCc/gTc																																																																															
BARD1	580	MSKCC	GRCh37	2	215593407	215593407	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1315454940		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	79	427	0	ENST00000260947.4:c.2327A>G	p.Asp776Gly	p.D776G	ENST00000260947	NM_000465.2	776	gAc/gGc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423890	47423890	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766572488		P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	122	589	0	ENST00000404338.3:c.1958C>T	p.Thr653Met	p.T653M	ENST00000404338	NM_004491.4	653	aCg/aTg																																																																															
CBL	867	MSKCC	GRCh37	11	119103177	119103177	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	121	519	0	ENST00000264033.4:c.215A>G	p.Asn72Ser	p.N72S	ENST00000264033	NM_005188.3	72	aAc/aGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0080579-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	406	317	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47599532	47599532	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080579-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	186	374	0	ENST00000395288.2:c.20C>G	p.Pro7Arg	p.P7R	ENST00000395288	NM_016506.5	7	cCt/cGt																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45658331	45658332	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	AA			P-0080579-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	71	228	0	ENST00000407780.3:c.54_55insTT	p.Asp19LeufsTer12	p.D19Lfs*12	ENST00000407780	NM_001283052.1	18	-/TT																																																																															
NSD1	64324	MSKCC	GRCh37	5	176665419	176665419	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080579-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	205	338	0	ENST00000439151.2:c.4103T>G	p.Leu1368Trp	p.L1368W	ENST00000439151	NM_022455.4	1368	tTg/tGg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151932988	151932988	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0080579-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	56	85	0	ENST00000262189.6:c.2683A>T	p.Arg895Ter	p.R895*	ENST00000262189	NM_170606.2	895	Aga/Tga																																																																															
JAK2	3717	MSKCC	GRCh37	9	5044468	5044468	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080579-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	155	253	0	ENST00000381652.3:c.416G>T	p.Gly139Val	p.G139V	ENST00000381652	NM_004972.3	139	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080582-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	23	399	0	ENST00000269305.4:c.853G>T	p.Glu285Ter	p.E285*	ENST00000269305	NM_001126112.2	285	Gag/Tag																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346365	73346365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080582-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	52	269	0	ENST00000377767.4:c.1435G>T	p.Asp479Tyr	p.D479Y	ENST00000377767	NM_014953.3	479	Gac/Tac																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281669	49281669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080582-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	40	422	0	ENST00000282018.3:c.716G>T	p.Arg239Leu	p.R239L	ENST00000282018	NM_020377.2	239	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080582-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	38	370	0	ENST00000269305.4:c.469G>C	p.Val157Leu	p.V157L	ENST00000269305	NM_001126112.2	157	Gtc/Ctc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123298175	123298175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080582-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	23	359	0	ENST00000358487.5:c.679G>A	p.Gly227Arg	p.G227R	ENST00000358487	NM_000141.4	227	Gga/Aga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391096	89391096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080582-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	31	400	0	ENST00000336596.2:c.1162G>A	p.Gly388Arg	p.G388R	ENST00000336596	NM_005233.5	388	Gga/Aga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080582-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	46	243	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741785	17741785	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080582-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	18	352	0	ENST00000250003.3:c.456C>A	p.Asn152Lys	p.N152K	ENST00000250003	NM_002478.4	152	aaC/aaA																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112008	115112008	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080582-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	33	397	2	ENST00000257566.3:c.1732C>A	p.Leu578Met	p.L578M	ENST00000257566	NM_016569.3	578	Ctg/Atg																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29207703	29207703	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080582-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	20	314	0	ENST00000240100.2:c.93C>A	p.Ser31Arg	p.S31R	ENST00000240100	NM_001394.6	31	agC/agA																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562790	95562790	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080582-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	28	387	0	ENST00000343455.3:c.4467A>T	p.Leu1489Phe	p.L1489F	ENST00000343455	NM_177438.2	1489	ttA/ttT																																																																															
KDM5A	5927	MSKCC	GRCh37	12	493290	493290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080582-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	38	303	0	ENST00000399788.2:c.273G>T	p.Leu91Phe	p.L91F	ENST00000399788	NM_001042603.1	91	ttG/ttT																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120483191	120483192	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0080582-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	37	340	0	ENST00000256646.2:c.3169_3170delinsCT	p.Gly1057Leu	p.G1057L	ENST00000256646	NM_024408.3	1057	GGg/CTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088759	27088759	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080583-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	25	437	0	ENST00000324856.7:c.2368C>T	p.Gln790Ter	p.Q790*	ENST00000324856	NM_006015.4	790	Cag/Tag																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727453	66727453	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397516790		P-0080583-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	105	388	0	ENST00000307102.5:c.169A>G	p.Lys57Glu	p.K57E	ENST00000307102	NM_002755.3	57	Aag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0080583-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	165	498	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178947827	178947827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080583-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	84	360	0	ENST00000263967.3:c.2702G>T	p.Cys901Phe	p.C901F	ENST00000263967	NM_006218.2	901	tGt/tTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245391	153245391	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0080583-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	78	329	0	ENST00000281708.4:c.1800T>G	p.Asp600Glu	p.D600E	ENST00000281708	NM_033632.3	600	gaT/gaG																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332607	153332607	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080583-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	162	512	0	ENST00000281708.4:c.349G>T	p.Glu117Ter	p.E117*	ENST00000281708	NM_033632.3	117	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175199	112175199	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080583-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	111	405	0	ENST00000257430.4:c.3910del	p.Ile1304Ter	p.I1304*	ENST00000257430	NM_000038.5	1303	cAa/ca																																																																															
PMS2	5395	MSKCC	GRCh37	7	6042266	6042266	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs587781913		P-0080583-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	54	286	0	ENST00000265849.7:c.355G>A	p.Asp119Asn	p.D119N	ENST00000265849	NM_000535.5	119	Gat/Aat																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980807	40980807	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080583-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	260	454	0	ENST00000373198.4:c.1679C>G	p.Thr560Ser	p.T560S	ENST00000373198	NM_133170.3	560	aCc/aGc																																																																															
APC	324	MSKCC	GRCh37	5	112151196	112151196	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080583-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	69	260	0	ENST00000257430.4:c.839del	p.Ser280Ter	p.S280*	ENST00000257430	NM_000038.5	280	tCa/ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7574035	7574035	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0080584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	89	327	0	ENST00000269305.4:c.994-2A>T		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3820648	3820648	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0080584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	154	502	0	ENST00000262367.5:c.2803C>T	p.Gln935Ter	p.Q935*	ENST00000262367	NM_004380.2	935	Cag/Tag																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041159	29041159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	128	406	0	ENST00000282397.4:c.269G>A	p.Ser90Asn	p.S90N	ENST00000282397	NM_002019.4	90	aGt/aAt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949065	44949065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	135	362	0	ENST00000377967.4:c.3626G>A	p.Arg1209Lys	p.R1209K	ENST00000377967	NM_021140.2	1209	aGg/aAg																																																																															
TET1	80312	MSKCC	GRCh37	10	70406248	70406248	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs755962320		P-0080584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	137	424	0	ENST00000373644.4:c.3762G>C	p.Lys1254Asn	p.K1254N	ENST00000373644	NM_030625.2	1254	aaG/aaC																																																																															
GNB1	2782	MSKCC	GRCh37	1	1721877	1721877	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	161	439	0	ENST00000378609.4:c.656G>T	p.Arg219Leu	p.R219L	ENST00000378609	NM_002074.3	219	cGg/cTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41531900	41531900	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	122	337	0	ENST00000263253.7:c.1612A>G	p.Asn538Asp	p.N538D	ENST00000263253	NM_001429.3	538	Aat/Gat																																																																															
RYBP	23429	MSKCC	GRCh37	3	72428240	72428240	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0080584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	134	334	0	ENST00000477973.2:c.650C>T	p.Gln218Ter	p.Q218*	ENST00000477973	NM_012234.5	218	Cag/Tag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820807	3820807	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	173	532	0	ENST00000262367.5:c.2644C>G	p.Pro882Ala	p.P882A	ENST00000262367	NM_004380.2	882	Cca/Gca																																																																															
PGR	5241	MSKCC	GRCh37	11	100999216	100999216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	152	527	0	ENST00000325455.5:c.586C>A	p.Leu196Met	p.L196M	ENST00000325455	NM_001202474.3	196	Ctg/Atg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	32	606	4	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	72	543	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	37	512	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
VHL	7428	MSKCC	GRCh37	3	10191488	10191488	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs5030818		P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	16	455	3	ENST00000256474.2:c.481C>T	p.Arg161Ter	p.R161*	ENST00000256474	NM_000551.3	161	Cga/Tga																																																																															
AKT1	207	MSKCC	GRCh37	14	105239278	105239278	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746272761		P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	22	676	0	ENST00000349310.3:c.1109G>A	p.Arg370His	p.R370H	ENST00000349310	NM_001014432.1	370	cGc/cAc																																																																															
BLM	641	MSKCC	GRCh37	15	91347484	91347484	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	31	528	0	ENST00000355112.3:c.3651del	p.Lys1217AsnfsTer62	p.K1217Nfs*62	ENST00000355112	NM_000057.2	1216	Aaa/aa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249361	153249361	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	35	415	0	ENST00000281708.4:c.1417del	p.Arg473GlufsTer25	p.R473Efs*25	ENST00000281708	NM_033632.3	473	Aga/ga																																																																															
PARP1	142	MSKCC	GRCh37	1	226567661	226567661	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183533639		P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	28	636	0	ENST00000366794.5:c.1505C>T	p.Ala502Val	p.A502V	ENST00000366794	NM_001618.3	502	gCg/gTg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37038181	37038181	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1064795693		P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	51	503	0	ENST00000231790.2:c.188A>G	p.Asp63Gly	p.D63G	ENST00000231790	NM_000249.3	63	gAc/gGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	29	686	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
ABL1	25	MSKCC	GRCh37	9	133760678	133760678	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753104701		P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	25	693	0	ENST00000318560.5:c.3001G>A	p.Ala1001Thr	p.A1001T	ENST00000318560	NM_005157.4	1001	Gcc/Acc																																																																															
INSR	3643	MSKCC	GRCh37	19	7125371	7125371	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55882714		P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	40	600	0	ENST00000302850.5:c.3181G>A	p.Glu1061Lys	p.E1061K	ENST00000302850	NM_000208.2	1061	Gag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845229	151845229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	27	600	0	ENST00000262189.6:c.13783C>T	p.Arg4595Cys	p.R4595C	ENST00000262189	NM_170606.2	4595	Cgc/Tgc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9783218	9783218	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs573872848		P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	26	530	0	ENST00000377346.4:c.2462G>A	p.Arg821His	p.R821H	ENST00000377346	NM_005026.3	821	cGc/cAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404560	8404560	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781289256		P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	25	405	0	ENST00000356435.5:c.4187G>A	p.Arg1396Gln	p.R1396Q	ENST00000356435		1396	cGg/cAg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724871	43724872	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	28	520	0	ENST00000382044.4:c.3195dup	p.Asn1066GlufsTer20	p.N1066Efs*20	ENST00000382044	NM_001141980.1	1065	-/G																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843428	3843428	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	27	528	0	ENST00000262367.5:c.1175del	p.Leu392Ter	p.L392*	ENST00000262367	NM_004380.2	392	tTg/tg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986841	36986841	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	21	599	0	ENST00000354822.5:c.848A>G	p.Gln283Arg	p.Q283R	ENST00000354822	NM_001079668.2	283	cAg/cGg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265484	152265484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs909211388		P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	25	536	0	ENST00000206249.3:c.937G>A	p.Asp313Asn	p.D313N	ENST00000206249	NM_000125.3	313	Gac/Aac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094368	27094368	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367844043		P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	26	604	0	ENST00000324856.7:c.3076C>T	p.Arg1026Cys	p.R1026C	ENST00000324856	NM_006015.4	1026	Cgt/Tgt																																																																															
CTR9	9646	MSKCC	GRCh37	11	10786100	10786100	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	50	558	0	ENST00000361367.2:c.1424del	p.Leu475TrpfsTer63	p.L475Wfs*63	ENST00000361367	NM_014633.3	473	taT/ta																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266171	198266171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	35	492	0	ENST00000335508.6:c.2449C>T	p.His817Tyr	p.H817Y	ENST00000335508	NM_012433.2	817	Cac/Tac																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245360	46245360	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781412841		P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	41	581	1	ENST00000334344.6:c.3454C>T	p.Pro1152Ser	p.P1152S	ENST00000334344	NM_152641.2	1152	Cca/Tca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5215298	5215298	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	26	558	0	ENST00000357368.4:c.4318+2T>C		p.X1440_splice	ENST00000357368	NM_002850.3	1440																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89391156	89391156	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	29	511	0	ENST00000336596.2:c.1222G>T	p.Glu408Ter	p.E408*	ENST00000336596	NM_005233.5	408	Gag/Tag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98248087	98248087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	32	515	0	ENST00000331920.6:c.464C>A	p.Pro155His	p.P155H	ENST00000331920	NM_000264.3	155	cCt/cAt																																																																															
HRAS	3265	MSKCC	GRCh37	11	533934	533934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	26	610	0	ENST00000311189.7:c.122G>A	p.Arg41Gln	p.R41Q	ENST00000311189		41	cGg/cAg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0080591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	55	387	0	ENST00000288602.6:c.1742A>T	p.Asn581Ile	p.N581I	ENST00000288602	NM_004333.4	581	aAt/aTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100093	27100093	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0080591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	68	729	0	ENST00000324856.7:c.3889G>T	p.Glu1297Ter	p.E1297*	ENST00000324856	NM_006015.4	1297	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0080591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	40	375	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
CDKN2B-AS1	100048912	MSKCC	GRCh37	9	21994121	21994172	+	upstream_gene_variant	5'Flank	DEL	TCGAGGGCCTTTCCTACCTGGTCTTCTAGGAAGCGGCTGCTGCCCTAGACGC	TCGAGGGCCTTTCCTACCTGGTCTTCTAGGAAGCGGCTGCTGCCCTAGACGC	-			P-0080591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	25	454	0				ENST00000428597																																																																																		
EPHA5	2044	MSKCC	GRCh37	4	66467851	66467851	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs749163457		P-0080591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	74	508	0	ENST00000273854.3:c.418C>A	p.Leu140Ile	p.L140I	ENST00000273854	NM_004439.5	140	Ctt/Att																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285741	87285741	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0080591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	71	672	0	ENST00000277120.3:c.78G>A	p.Trp26Ter	p.W26*	ENST00000277120		26	tgG/tgA																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70970976	70970976	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	63	586	0	ENST00000276594.2:c.1285G>T	p.Asp429Tyr	p.D429Y	ENST00000276594	NM_024504.3	429	Gat/Tat																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781923	3781923	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1363001625		P-0080591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	63	564	0	ENST00000262367.5:c.4744A>G	p.Ser1582Gly	p.S1582G	ENST00000262367	NM_004380.2	1582	Agc/Ggc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0080593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	163	421	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128050368	128050368	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0080593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	60	428	0	ENST00000285398.2:c.289C>T	p.Gln97Ter	p.Q97*	ENST00000285398	NM_000122.1	97	Caa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0080620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	88	381	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149452901	149452901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756959788		P-0080620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	68	457	0	ENST00000286301.3:c.1045C>T	p.Pro349Ser	p.P349S	ENST00000286301	NM_005211.3	349	Ccc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0080621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	46	332	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
APC	324	MSKCC	GRCh37	5	112174683	112174683	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	64	495	0	ENST00000257430.4:c.3392A>T	p.Gln1131Leu	p.Q1131L	ENST00000257430	NM_000038.5	1131	cAa/cTa																																																																															
BCL6	604	MSKCC	GRCh37	3	187447218	187447218	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	69	429	0	ENST00000232014.4:c.975del	p.Lys326ArgfsTer106	p.K326Rfs*106	ENST00000232014	NM_001130845.1	325	cgG/cg																																																																															
POLE	5426	MSKCC	GRCh37	12	133237730	133237730	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs781702191		P-0080621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	42	362	0	ENST00000320574.5:c.2885A>G	p.Asp962Gly	p.D962G	ENST00000320574	NM_006231.2	962	gAc/gGc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36840594	36840594	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	41	473	0	ENST00000358127.4:c.1139C>G	p.Ala380Gly	p.A380G	ENST00000358127	NM_001280556.1	380	gCc/gGc																																																																															
ATRX	546	MSKCC	GRCh37	X	76937360	76937360	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0080621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	34	376	0	ENST00000373344.5:c.3388A>T	p.Lys1130Ter	p.K1130*	ENST00000373344	NM_000489.3	1130	Aaa/Taa																																																																															
KDR	3791	MSKCC	GRCh37	4	55973979	55973979	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	77	478	0	ENST00000263923.4:c.1337C>A	p.Thr446Lys	p.T446K	ENST00000263923	NM_002253.2	446	aCg/aAg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361152	66361152	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	54	444	0	ENST00000273854.3:c.1020G>C	p.Lys340Asn	p.K340N	ENST00000273854	NM_004439.5	340	aaG/aaC																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0080625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	23	254	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0080625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	13	243	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																															
HGF	3082	MSKCC	GRCh37	7	81372752	81372752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	31	300	0	ENST00000222390.5:c.782G>T	p.Arg261Leu	p.R261L	ENST00000222390	NM_000601.4	261	cGc/cTc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18650671	18650671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	34	303	0	ENST00000266497.5:c.2882G>A	p.Gly961Glu	p.G961E	ENST00000266497		961	gGa/gAa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010560	48010560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	27	294	0	ENST00000234420.5:c.188C>T	p.Ser63Phe	p.S63F	ENST00000234420	NM_000179.2	63	tCc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0080625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	33	260	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NF1	4763	MSKCC	GRCh37	17	29562641	29562641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854562		P-0080625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	12	281	0	ENST00000358273.4:c.3721C>T	p.Arg1241Ter	p.R1241*	ENST00000358273	NM_001042492.2	1241	Cga/Tga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15938260	15938265	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TGAAAG	TGAAAG	-			P-0080625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	15	233	0	ENST00000268712.3:c.6956-7_6956-2del		p.X2319_splice	ENST00000268712	NM_006311.3	2319																																																																																
CDKN1A	1026	MSKCC	GRCh37	6	36652174	36652174	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	22	383	0	ENST00000244741.5:c.296C>G	p.Pro99Arg	p.P99R	ENST00000244741	NM_000389.4	99	cCt/cGt																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538865	23538865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	22	283	0	ENST00000380871.4:c.574G>A	p.Glu192Lys	p.E192K	ENST00000380871	NM_006167.3	192	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	82	266	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28919635	28919636	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0080634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	67	312	0	ENST00000282397.4:c.2301_2302delinsTT	p.Ala768Ser	p.A768S	ENST00000282397	NM_002019.4	767	gtGGct/gtTTct																																																																															
MED12	9968	MSKCC	GRCh37	X	70346966	70346966	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	52	370	0	ENST00000374080.3:c.2833G>C	p.Ala945Pro	p.A945P	ENST00000374080		945	Gca/Cca																																																																															
RAF1	5894	MSKCC	GRCh37	3	12632378	12632378	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	60	495	0	ENST00000251849.4:c.1289A>T	p.Tyr430Phe	p.Y430F	ENST00000251849	NM_002880.3	430	tAc/tTc																																																																															
CTR9	9646	MSKCC	GRCh37	11	10794813	10794813	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	57	433	0	ENST00000361367.2:c.2720G>T	p.Gly907Val	p.G907V	ENST00000361367	NM_014633.3	907	gGt/gTt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967280	134967280	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	51	457	0	ENST00000398015.3:c.2619G>T	p.Glu873Asp	p.E873D	ENST00000398015	NM_004441.4	873	gaG/gaT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93955173	93955173	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0080634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	49	338	0	ENST00000369303.4:c.2727-2A>T		p.X909_splice	ENST00000369303	NM_004440.3	909																																																																																
MITF	4286	MSKCC	GRCh37	3	69998240	69998240	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs745758770		P-0080634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	62	411	1	ENST00000352241.4:c.801C>A	p.Asn267Lys	p.N267K	ENST00000352241	NM_198159.2	267	aaC/aaA																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0080636-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	69	450	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577111	7577111	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs786202082		P-0080636-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	99	443	0	ENST00000269305.4:c.827C>A	p.Ala276Asp	p.A276D	ENST00000269305	NM_001126112.2	276	gCc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080636-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	199	295	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29653158	29653158	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080636-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	120	501	0	ENST00000358273.4:c.5156T>C	p.Ile1719Thr	p.I1719T	ENST00000358273	NM_001042492.2	1719	aTa/aCa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106559	27106559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	52	450	0	ENST00000324856.7:c.6170G>A	p.Arg2057Gln	p.R2057Q	ENST00000324856	NM_006015.4	2057	cGg/cAg																																																																															
TET1	80312	MSKCC	GRCh37	10	70446284	70446284	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	22	380	0	ENST00000373644.4:c.5230del	p.Arg1744GlufsTer18	p.R1744Efs*18	ENST00000373644	NM_030625.2	1742	Aaa/aa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	30	408	5	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432117	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	33	409	0	ENST00000257555.6:c.864_865del	p.Pro291ArgfsTer25	p.P291Rfs*25	ENST00000257555		288	ggGCcc/ggcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427664	49427665	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	31	489	0	ENST00000301067.7:c.10821_10823dup	p.Gln3612dup	p.Q3612dup	ENST00000301067	NM_003482.3	3612	caa/caGCAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446480	49446481	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	46	349	0	ENST00000301067.7:c.1124dup	p.Glu376ArgfsTer8	p.E376Rfs*8	ENST00000301067	NM_003482.3	375	cca/ccCa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448480	49448480	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	33	383	0	ENST00000301067.7:c.231del	p.His77GlnfsTer53	p.H77Qfs*53	ENST00000301067	NM_003482.3	77	caC/ca																																																																															
RB1	5925	MSKCC	GRCh37	13	48881488	48881489	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	28	256	0	ENST00000267163.4:c.219_220dup	p.Ala74GlufsTer4	p.A74Efs*4	ENST00000267163	NM_000321.2	70	-/AG																																																																															
AKT1	207	MSKCC	GRCh37	14	105243045	105243045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	24	354	0	ENST00000349310.3:c.238T>C	p.Trp80Arg	p.W80R	ENST00000349310	NM_001014432.1	80	Tgg/Cgg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422035	81422035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	20	321	0	ENST00000298171.2:c.11C>T	p.Ala4Val	p.A4V	ENST00000298171	NM_000369.2	4	gCg/gTg																																																																															
USP8	9101	MSKCC	GRCh37	15	50784990	50784990	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs146125856		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	16	236	2	ENST00000307179.4:c.2327T>C	p.Leu776Pro	p.L776P	ENST00000307179		776	cTt/cCt																																																																															
BLM	641	MSKCC	GRCh37	15	91304411	91304411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	27	317	0	ENST00000355112.3:c.1808C>T	p.Ala603Val	p.A603V	ENST00000355112	NM_000057.2	603	gCc/gTc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134449	2134449	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768684515		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	40	409	0	ENST00000219476.3:c.4226G>A	p.Arg1409Gln	p.R1409Q	ENST00000219476	NM_000548.3	1409	cGg/cAg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs774532876		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	26	312	0	ENST00000294008.3:c.1406del	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																															
FLCN	201163	MSKCC	GRCh37	17	17127346	17127346	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	29	347	0	ENST00000285071.4:c.508T>C	p.Tyr170His	p.Y170H	ENST00000285071	NM_144997.5	170	Tac/Cac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	36	506	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436028	56436028	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	48	440	0	ENST00000407977.2:c.1109del	p.Pro370HisfsTer49	p.P370Hfs*49	ENST00000407977		370	cCa/ca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	40	437	3	ENST00000407977.2:c.349del	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532648	63532648	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1025003994		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	33	361	0	ENST00000307078.5:c.1931A>G	p.Tyr644Cys	p.Y644C	ENST00000307078	NM_004655.3	644	tAc/tGc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311704	15311704	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1316040075		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	14	282	0	ENST00000263388.2:c.13del	p.Ala5ProfsTer29	p.A5Pfs*29	ENST00000263388	NM_000435.2	5	Gcc/cc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967091	18967092	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs1384543747		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	15	289	0	ENST00000262803.5:c.1814_1815del	p.Glu605AlafsTer17	p.E605Afs*17	ENST00000262803	NM_002911.3	602	gcAGag/gcag																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	14	268	0	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45856370	45856370	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140522180		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	33	351	0	ENST00000391945.4:c.1802G>A	p.Arg601Gln	p.R601Q	ENST00000391945	NM_000400.3	601	cGg/cAg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098918	178098918	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182428269		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	30	381	0	ENST00000397062.3:c.127C>T	p.Arg43Trp	p.R43W	ENST00000397062	NM_006164.4	43	Cgg/Tgg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	33	389	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630360	67630360	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	21	264	0	ENST00000272342.5:c.550del	p.Thr184HisfsTer9	p.T184Hfs*9	ENST00000272342	NM_019002.3	182	ttA/tt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017790	31017790	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs564841799		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	13	264	0	ENST00000375687.4:c.652C>T	p.Arg218Cys	p.R218C	ENST00000375687	NM_015338.5	218	Cgt/Tgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	29	335	2	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29438535	29438535	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	30	258	0	ENST00000544604.2:c.482del	p.Asn161ThrfsTer8	p.N161Tfs*8	ENST00000544604	NM_001206998.1	160	gAa/ga																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29440867	29440867	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1188411932		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	19	315	0	ENST00000544604.2:c.733C>T	p.Arg245Ter	p.R245*	ENST00000544604	NM_001206998.1	245	Cga/Tga																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204623	128204623	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	28	368	0	ENST00000341105.2:c.818del	p.Gly273AspfsTer53	p.G273Dfs*53	ENST00000341105	NM_032638.4	273	gGa/ga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851558	134851558	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs770155473		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	25	290	0	ENST00000398015.3:c.964G>A	p.Val322Ile	p.V322I	ENST00000398015	NM_004441.4	322	Gtc/Atc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541130	187541130	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750302176		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	28	438	1	ENST00000441802.2:c.6610G>A	p.Val2204Met	p.V2204M	ENST00000441802	NM_005245.3	2204	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	21	402	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
NPM1	4869	MSKCC	GRCh37	5	170834761	170834761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	17	292	0	ENST00000296930.5:c.829C>T	p.Arg277Trp	p.R277W	ENST00000296930	NM_002520.6	277	Cgg/Tgg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046271	180046271	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			81	16	213	0	ENST00000261937.6:c.2743G>C	p.Ala915Pro	p.A915P	ENST00000261937	NM_182925.4	915	Gcg/Ccg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048156	180048156	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747033940		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	24	403	1	ENST00000261937.6:c.2117C>T	p.Ala706Val	p.A706V	ENST00000261937	NM_182925.4	706	gCg/gTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs750808726		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	17	433	0	ENST00000261937.6:c.1267dup	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	39	311	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178635	32178635	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs761063325		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	24	344	0	ENST00000375023.3:c.2759del	p.Pro920LeufsTer12	p.P920Lfs*12	ENST00000375023	NM_004557.3	920	cCt/ct																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	15	299	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739435	145739440	+	inframe_deletion	In_Frame_Del	DEL	TGTGGC	TGTGGC	-	rs781471399		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	21	379	0	ENST00000428558.2:c.1930_1935del	p.Ala644_Thr645del	p.A644_T645del	ENST00000428558	NM_004260.3	644	GCCACA/-																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70967546	70967547	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	12	305	0	ENST00000276594.2:c.1476_1477del	p.Tyr493LeufsTer3	p.Y493Lfs*3	ENST00000276594	NM_024504.3	492	gtGTat/gtat																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139418371	139418371	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	23	367	0	ENST00000277541.6:c.201del	p.Cys68AlafsTer32	p.C68Afs*32	ENST00000277541	NM_017617.3	67	ccC/cc																																																																															
BTK	695	MSKCC	GRCh37	X	100617180	100617180	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	25	361	0	ENST00000308731.7:c.569del	p.Pro190GlnfsTer9	p.P190Qfs*9	ENST00000308731	NM_000061.2	190	cCa/ca																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412464	63412464	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	17	356	0	ENST00000330258.3:c.703C>A	p.Pro235Thr	p.P235T	ENST00000330258	NM_152424.3	235	Cct/Act																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187203	11187203	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	20	303	0	ENST00000361445.4:c.6217-2A>C		p.X2073_splice	ENST00000361445	NM_004958.3	2073																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27023639	27023639	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	21	319	0	ENST00000324856.7:c.745T>C	p.Ser249Pro	p.S249P	ENST00000324856	NM_006015.4	249	Tcc/Ccc																																																																															
ATM	472	MSKCC	GRCh37	11	108196926	108196926	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs866191653		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	23	316	0	ENST00000278616.4:c.6949A>G	p.Lys2317Glu	p.K2317E	ENST00000278616	NM_000051.3	2317	Aag/Gag																																																																															
CCND1	595	MSKCC	GRCh37	11	69457940	69457940	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	41	302	0	ENST00000227507.2:c.340A>G	p.Lys114Glu	p.K114E	ENST00000227507	NM_053056.2	114	Aag/Gag																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121437427	121437427	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	29	336	0	ENST00000257555.6:c.1765A>G	p.Thr589Ala	p.T589A	ENST00000257555		589	Aca/Gca																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246343	46246343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	34	404	0	ENST00000334344.6:c.4437G>T	p.Gln1479His	p.Q1479H	ENST00000334344	NM_152641.2	1479	caG/caT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438045	49438045	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	29	370	0	ENST00000301067.7:c.5126G>T	p.Arg1709Leu	p.R1709L	ENST00000301067	NM_003482.3	1709	cGc/cTc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582025	95582025	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	27	452	0	ENST00000343455.3:c.1886C>G	p.Thr629Arg	p.T629R	ENST00000343455	NM_177438.2	629	aCg/aGg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434647	99434647	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	22	358	0	ENST00000268035.6:c.734A>G	p.Asp245Gly	p.D245G	ENST00000268035	NM_000875.3	245	gAc/gGc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347650	89347650	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146303178		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	29	438	1	ENST00000301030.4:c.5300C>T	p.Ala1767Val	p.A1767V	ENST00000301030	NM_001256183.1	1767	gCt/gTt																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7976596	7976596	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	28	308	0	ENST00000319144.4:c.1796T>C	p.Met599Thr	p.M599T	ENST00000319144	NM_001139.2	599	aTg/aCg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170440	11170440	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	21	352	0	ENST00000344626.4:c.4647C>G	p.Asp1549Glu	p.D1549E	ENST00000344626	NM_003072.3	1549	gaC/gaG																																																																															
UPF1	5976	MSKCC	GRCh37	19	18968187	18968187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	25	306	0	ENST00000262803.5:c.2027C>T	p.Ala676Val	p.A676V	ENST00000262803	NM_002911.3	676	gCc/gTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220147	36220147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	21	406	0	ENST00000222270.7:c.4867G>A	p.Asp1623Asn	p.D1623N	ENST00000222270	NM_014727.1	1623	Gac/Aac																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966424	25966424	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	33	412	0	ENST00000435504.4:c.2782del	p.Thr928ProfsTer6	p.T928Pfs*6	ENST00000435504		928	Acc/cc																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47600637	47600637	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	32	259	0	ENST00000263735.4:c.112T>C	p.Cys38Arg	p.C38R	ENST00000263735	NM_002354.2	38	Tgc/Cgc																																																																															
ATR	545	MSKCC	GRCh37	3	142275286	142275286	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	16	312	0	ENST00000350721.4:c.2017A>C	p.Ser673Arg	p.S673R	ENST00000350721	NM_001184.3	673	Agt/Cgt																																																																															
KDR	3791	MSKCC	GRCh37	4	55968618	55968618	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	40	310	0	ENST00000263923.4:c.2045A>T	p.Glu682Val	p.E682V	ENST00000263923	NM_002253.2	682	gAa/gTa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192461	138192461	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs746536779		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	34	322	0	ENST00000237289.4:c.97A>G	p.Thr33Ala	p.T33A	ENST00000237289	NM_001270507.1	33	Act/Gct																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287921	33287921	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			775	47	399	0	ENST00000374542.5:c.1332T>G	p.Asp444Glu	p.D444E	ENST00000374542	NM_001141970.1	444	gaT/gaG																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43745335	43745335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	134	376	0	ENST00000523873.1:c.248G>A	p.Cys83Tyr	p.C83Y	ENST00000523873		83	tGc/tAc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141542617	141542617	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	21	351	0	ENST00000220592.5:c.2369A>G	p.Tyr790Cys	p.Y790C	ENST00000220592	NM_012154.3	790	tAc/tGc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417344	139417344	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs567890045		P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	37	368	0	ENST00000277541.6:c.700C>T	p.Arg234Cys	p.R234C	ENST00000277541	NM_017617.3	234	Cgc/Tgc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933460	39933460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	21	422	1	ENST00000378444.4:c.1139G>T	p.Ser380Ile	p.S380I	ENST00000378444	NM_001123385.1	380	aGc/aTc																																																																															
ARAF	369	MSKCC	GRCh37	X	47430395	47430395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	31	370	0	ENST00000377045.4:c.1670G>A	p.Arg557Gln	p.R557Q	ENST00000377045	NM_001654.4	557	cGg/cAg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53243947	53243947	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	45	322	0	ENST00000375401.3:c.1046A>G	p.Tyr349Cys	p.Y349C	ENST00000375401	NM_004187.3	349	tAc/tGc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230744	66230744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	16	326	0	ENST00000273854.3:c.2227G>A	p.Val743Met	p.V743M	ENST00000273854	NM_004439.5	743	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579345	7579346	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0080645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	292	322	0	ENST00000269305.4:c.341dup	p.Leu114PhefsTer35	p.L114Ffs*35	ENST00000269305	NM_001126112.2	114	ttg/ttTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	242	202	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732946	30732946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	225	222	0	ENST00000359013.4:c.1634G>T	p.Cys545Phe	p.C545F	ENST00000359013	NM_001024847.2	545	tGc/tTc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244760	46244760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	419	352	0	ENST00000334344.6:c.2854G>A	p.Ala952Thr	p.A952T	ENST00000334344	NM_152641.2	952	Gca/Aca																																																																															
ATM	472	MSKCC	GRCh37	11	108158369	108158369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	33	191	0	ENST00000278616.4:c.4036G>C	p.Glu1346Gln	p.E1346Q	ENST00000278616	NM_000051.3	1346	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574026	7574026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	35	321	0	ENST00000269305.4:c.1001G>T	p.Gly334Val	p.G334V	ENST00000269305	NM_001126112.2	334	gGg/gTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518262	8518262	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	41	424	0	ENST00000356435.5:c.1129C>A	p.Arg377Ser	p.R377S	ENST00000356435		377	Cgc/Agc																																																																															
ATM	472	MSKCC	GRCh37	11	108206595	108206595	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1431188311		P-0080648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	60	395	0	ENST00000278616.4:c.8175T>A	p.Asp2725Glu	p.D2725E	ENST00000278616	NM_000051.3	2725	gaT/gaA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412367	63412367	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0080648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	107	550	0	ENST00000330258.3:c.800C>A	p.Ser267Ter	p.S267*	ENST00000330258	NM_152424.3	267	tCa/tAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	150	251	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MET	4233	MSKCC	GRCh37	7	116339154	116339154	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	49	320	0	ENST00000397752.3:c.16G>C	p.Val6Leu	p.V6L	ENST00000397752	NM_000245.2	6	Gtg/Ctg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36215945	36215945	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	36	485	0	ENST00000222270.7:c.3485A>G	p.Gln1162Arg	p.Q1162R	ENST00000222270	NM_014727.1	1162	cAg/cGg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36215935	36215935	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	36	491	0	ENST00000222270.7:c.3475A>G	p.Thr1159Ala	p.T1159A	ENST00000222270	NM_014727.1	1159	Act/Gct																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72891520	72891520	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	50	385	0	ENST00000325599.8:c.242C>G	p.Pro81Arg	p.P81R	ENST00000325599	NM_018130.2	81	cCt/cGt																																																																															
PGR	5241	MSKCC	GRCh37	11	100998344	100998344	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	45	294	0	ENST00000325455.5:c.1458C>A	p.Ser486Arg	p.S486R	ENST00000325455	NM_001202474.3	486	agC/agA																																																																															
TP53	7157	MSKCC	GRCh37	17	7579457	7579457	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	77	602	0	ENST00000269305.4:c.230del	p.Pro77GlnfsTer46	p.P77Qfs*46	ENST00000269305	NM_001126112.2	77	cCa/ca																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562481	21562481	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	17	396	0	ENST00000382592.4:c.1438G>T	p.Ala480Ser	p.A480S	ENST00000382592	NM_014572.2	480	Gct/Tct																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459685	149459685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	40	566	0	ENST00000286301.3:c.522C>A	p.Asp174Glu	p.D174E	ENST00000286301	NM_005211.3	174	gaC/gaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578448	7578448	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1064795691		P-0080651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	341	569	1	ENST00000269305.4:c.482C>A	p.Ala161Asp	p.A161D	ENST00000269305	NM_001126112.2	161	gCc/gAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	159	496	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101904949	101904949	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	77	390	0	ENST00000374994.4:c.937C>G	p.Leu313Val	p.L313V	ENST00000374994	NM_004612.2	313	Ctt/Gtt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671731	67671731	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1385636609		P-0080651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			733	171	519	0	ENST00000264010.4:c.2140G>A	p.Gly714Arg	p.G714R	ENST00000264010	NM_006565.3	714	Gga/Aga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	190	260	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9547028	9547028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	248	457	0	ENST00000353224.5:c.994G>T	p.Asp332Tyr	p.D332Y	ENST00000353224	NM_177990.2	332	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0080652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	145	418	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																															
MPL	4352	MSKCC	GRCh37	1	43817913	43817913	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0080652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	39	539	0	ENST00000372470.3:c.1592C>G	p.Ser531Ter	p.S531*	ENST00000372470	NM_005373.2	531	tCa/tGa																																																																															
SUFU	51684	MSKCC	GRCh37	10	104264076	104264076	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	276	433	0	ENST00000369902.3:c.167C>G	p.Ala56Gly	p.A56G	ENST00000369902	NM_016169.3	56	gCt/gGt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909451	50909451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	96	476	0	ENST00000440232.2:c.1255C>A	p.Pro419Thr	p.P419T	ENST00000440232	NM_002691.3	419	Cct/Act																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224405	36224405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	283	691	0	ENST00000222270.7:c.6955G>A	p.Gly2319Ser	p.G2319S	ENST00000222270	NM_014727.1	2319	Ggc/Agc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3827631	3827631	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141098117		P-0080654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	34	318	0	ENST00000262367.5:c.2141G>A	p.Arg714His	p.R714H	ENST00000262367	NM_004380.2	714	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	77	312	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MAX	4149	MSKCC	GRCh37	14	65544705	65544706	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0080654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	122	470	0	ENST00000358664.4:c.220_221del	p.Met74AlafsTer12	p.M74Afs*12	ENST00000358664	NM_002382.4	74	ATg/g																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144678	55144678	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375434317		P-0080659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	27	489	1	ENST00000257290.5:c.2152C>T	p.Arg718Trp	p.R718W	ENST00000257290	NM_006206.4	718	Cgg/Tgg																																																																															
MET	4233	MSKCC	GRCh37	7	116411883	116411903	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCTTTCTCTCTGTTTTAAGA	TTCTTTCTCTCTGTTTTAAGA	-			P-0080659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	134	657	0	ENST00000397752.3:c.2888-19_2889del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
MAP2K1	5604	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs869025608		P-0080698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	26	487	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																															
STK11	6794	MSKCC	GRCh37	19	1207176	1207176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	25	523	0	ENST00000326873.7:c.267del	p.Asn90ThrfsTer6	p.N90Tfs*6	ENST00000326873	NM_000455.4	88	atC/at																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597495	10597495	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0080698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	31	421	0	ENST00000171111.5:c.1709-1G>T		p.X570_splice	ENST00000171111	NM_203500.1	570																																																																																
ANKRD11	29123	MSKCC	GRCh37	16	89350196	89350196	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	14	729	0	ENST00000301030.4:c.2754del	p.Lys919ArgfsTer58	p.K919Rfs*58	ENST00000301030	NM_001256183.1	918	gaG/ga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0080701-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			230	69	286	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965671	93965671	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080701-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			259	27	320	0	ENST00000369303.4:c.2257G>C	p.Gly753Arg	p.G753R	ENST00000369303	NM_004440.3	753	Gga/Cga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134898745	134898746	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0080701-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	26	366	0	ENST00000398015.3:c.1803_1804delinsAT	p.Asp602Tyr	p.D602Y	ENST00000398015	NM_004441.4	601	gaGGat/gaATat																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0080717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	314	508	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540652		P-0080717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	278	418	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1219413	1219413	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0080717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	198	507	0	ENST00000326873.7:c.464+1G>C		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
APC	324	MSKCC	GRCh37	5	112175925	112175925	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs863225356		P-0080717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	153	442	0	ENST00000257430.4:c.4634C>G	p.Ser1545Ter	p.S1545*	ENST00000257430	NM_000038.5	1545	tCa/tGa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602398	10602398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	235	613	0	ENST00000171111.5:c.1180G>T	p.Asp394Tyr	p.D394Y	ENST00000171111	NM_203500.1	394	Gac/Tac																																																																															
RASA1	5921	MSKCC	GRCh37	5	86642488	86642488	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0080717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	39	184	0	ENST00000274376.6:c.1050-1G>C		p.X350_splice	ENST00000274376	NM_002890.2	350																																																																																
PPP4R2	151987	MSKCC	GRCh37	3	73047241	73047241	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	85	312	0	ENST00000356692.5:c.48G>C	p.Arg16Ser	p.R16S	ENST00000356692		16	agG/agC																																																																															
NSD1	64324	MSKCC	GRCh37	5	176662835	176662835	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	92	306	0	ENST00000439151.2:c.3810G>C	p.Glu1270Asp	p.E1270D	ENST00000439151	NM_022455.4	1270	gaG/gaC																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62324226	62324226	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	C			P-0080717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			948	113	605	0	ENST00000482936.1:c.2721G>C	p.Leu907Phe	p.L907F	ENST00000482936		907	ttG/ttC																																																																															
SPEN	23013	MSKCC	GRCh37	1	16203097	16203097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	203	419	0	ENST00000375759.3:c.805C>G	p.Pro269Ala	p.P269A	ENST00000375759	NM_015001.2	269	Cct/Gct																																																																															
CTCF	10664	MSKCC	GRCh37	16	67663380	67663380	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	72	376	0	ENST00000264010.4:c.1781G>C	p.Ser594Thr	p.S594T	ENST00000264010	NM_006565.3	594	aGt/aCt																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73774953	73774953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	205	253	0	ENST00000254810.4:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000254810	NM_005324.3	74	Gag/Cag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5240300	5240300	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	200	494	0	ENST00000357368.4:c.1614G>C	p.Glu538Asp	p.E538D	ENST00000357368	NM_002850.3	538	gaG/gaC																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913389		P-0080726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	177	397	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0080726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	170	346	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168766	32168766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	182	407	0	ENST00000375023.3:c.4157G>A	p.Gly1386Asp	p.G1386D	ENST00000375023	NM_004557.3	1386	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591889	48591889	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1060500741		P-0080726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	134	387	0	ENST00000342988.3:c.1052A>T	p.Asp351Val	p.D351V	ENST00000342988	NM_005359.5	351	gAt/gTt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244327	41244327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	147	376	0	ENST00000357654.3:c.3221G>A	p.Arg1074Lys	p.R1074K	ENST00000357654	NM_007294.3	1074	aGa/aAa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922301	39922301	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	109	286	0	ENST00000378444.4:c.3871C>G	p.Pro1291Ala	p.P1291A	ENST00000378444	NM_001123385.1	1291	Ccg/Gcg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78811759	78811759	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	143	250	0	ENST00000306801.3:c.1174C>G	p.Gln392Glu	p.Q392E	ENST00000306801	NM_020761.2	392	Cag/Gag																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763290	59763290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	166	354	0	ENST00000259008.2:c.2812G>A	p.Glu938Lys	p.E938K	ENST00000259008	NM_032043.2	938	Gaa/Aaa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11113723	11113723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	145	315	0	ENST00000344626.4:c.1831C>T	p.Gln611Ter	p.Q611*	ENST00000344626	NM_003072.3	611	Cag/Tag																																																																															
CDK6	1021	MSKCC	GRCh37	7	92244491	92244491	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	166	377	0	ENST00000265734.4:c.944C>A	p.Pro315Gln	p.P315Q	ENST00000265734	NM_001259.6	315	cCg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591936	48591937	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0080726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	49	361	0	ENST00000342988.3:c.1102_1103del	p.Ser368GlnfsTer9	p.S368Qfs*9	ENST00000342988	NM_005359.5	367	CTc/c																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206652330	206652330	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	70	486	1	ENST00000367120.3:c.1042del	p.Arg348AspfsTer32	p.R348Dfs*32	ENST00000367120	NM_014002.3	346	gCc/gc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099103	27099103	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	109	474	0	ENST00000324856.7:c.3524del	p.Pro1175HisfsTer5	p.P1175Hfs*5	ENST00000324856	NM_006015.4	1173	atC/at																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107063	27107064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	106	455	0	ENST00000324856.7:c.6676dup	p.Thr2226AsnfsTer2	p.T2226Nfs*2	ENST00000324856	NM_006015.4	2225	cca/ccAa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937067	36937067	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767670169		P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	88	375	0	ENST00000361632.4:c.1252C>T	p.Arg418Cys	p.R418C	ENST00000361632		418	Cgt/Tgt																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594883	47594883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780075355		P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	104	482	0	ENST00000395288.2:c.1156del	p.Glu386ArgfsTer27	p.E386Rfs*27	ENST00000395288	NM_016506.5	386	Gag/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	62	271	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433773	49433773	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs35050033		P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	32	460	0	ENST00000301067.7:c.7780del	p.Leu2594TrpfsTer97	p.L2594Wfs*97	ENST00000301067	NM_003482.3	2594	Ctg/tg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	95	390	5	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907420	32907421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1253401667		P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	21	350	3	ENST00000380152.3:c.1813dup	p.Ile605AsnfsTer11	p.I605Nfs*11	ENST00000380152		602	gga/ggAa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671654	67671655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	85	387	1	ENST00000264010.4:c.2070dup	p.Glu691ArgfsTer5	p.E691Rfs*5	ENST00000264010	NM_006565.3	688	gta/gtAa																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56787259	56787259	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28363311		P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	65	290	0	ENST00000337432.4:c.745C>T	p.Arg249Cys	p.R249C	ENST00000337432	NM_058216.2	249	Cgt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602616	10602616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	107	404	0	ENST00000171111.5:c.962C>T	p.Ala321Val	p.A321V	ENST00000171111	NM_203500.1	321	gCg/gTg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099334	4099334	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138873805		P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	68	447	0	ENST00000262948.5:c.784G>A	p.Val262Ile	p.V262I	ENST00000262948	NM_030662.3	262	Gtc/Atc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661663	227661664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761880048		P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	137	411	7	ENST00000305123.5:c.1791dup	p.His598AlafsTer13	p.H598Afs*13	ENST00000305123	NM_005544.2	597	-/G																																																																															
ALK	238	MSKCC	GRCh37	2	29443611	29443612	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	86	404	0	ENST00000389048.3:c.3605dup	p.Asp1203ArgfsTer82	p.D1203Rfs*82	ENST00000389048	NM_004304.4	1202	gga/ggGa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030591	48030591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	107	399	0	ENST00000234420.5:c.3209del	p.Gly1070ValfsTer9	p.G1070Vfs*9	ENST00000234420	NM_000179.2	1069	Ggg/gg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998164	169998165	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	89	341	0	ENST00000295797.4:c.861dup	p.Glu288ArgfsTer4	p.E288Rfs*4	ENST00000295797	NM_002740.5	285	-/A																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	99	330	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	8	193	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
TP63	8626	MSKCC	GRCh37	3	189587160	189587160	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	79	368	0	ENST00000264731.3:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000264731	NM_003722.4	393	Cga/Tga																																																																															
MLH1	4292	MSKCC	GRCh37	3	37053347	37053348	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1342363565		P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	205	368	0	ENST00000231790.2:c.588dup	p.Gln197ThrfsTer7	p.Q197Tfs*7	ENST00000231790	NM_000249.3	194	-/A																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	214	347	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52443599	52443601	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	101	435	0	ENST00000460680.1:c.91_93del	p.Glu31del	p.E31del	ENST00000460680	NM_004656.3	31	GAG/-																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	83	358	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755670	57755670	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	82	425	0	ENST00000274289.3:c.117del	p.Glu40ArgfsTer60	p.E40Rfs*60	ENST00000274289	NM_006622.3	39	ccC/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	172	311	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
SESN1	27244	MSKCC	GRCh37	6	109321766	109321766	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	90	324	1	ENST00000436639.2:c.657del	p.Lys219AsnfsTer5	p.K219Nfs*5	ENST00000436639	NM_014454.2	219	aaA/aa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710578	117710578	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142303126		P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	112	421	0	ENST00000368508.3:c.1694C>T	p.Ser565Leu	p.S565L	ENST00000368508	NM_002944.2	565	tCg/tTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100445	157100445	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	22	130	0	ENST00000346085.5:c.1382G>C	p.Gly461Ala	p.G461A	ENST00000346085	NM_020732.3	461	gGg/gCg																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239116	31239117	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	12	210	0	ENST00000376228.5:c.352_353del	p.Thr118ProfsTer20	p.T118Pfs*20	ENST00000376228	NM_002117.5	118	ACc/c																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	106	342	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879593	151879594	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC	rs749417254		P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	73	404	0	ENST00000262189.6:c.5349_5351dup	p.Gln1787dup	p.Q1787dup	ENST00000262189	NM_170606.2	1787	caa/caGCAa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123263412	123263412	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	66	279	0	ENST00000358487.5:c.1331T>A	p.Leu444Gln	p.L444Q	ENST00000358487	NM_000141.4	444	cTg/cAg																																																																															
RET	5979	MSKCC	GRCh37	10	43615048	43615048	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	83	513	0	ENST00000355710.3:c.2462A>G	p.Lys821Arg	p.K821R	ENST00000355710	NM_020975.4	821	aAa/aGa																																																																															
GAB2	9846	MSKCC	GRCh37	11	77937658	77937658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	58	295	0	ENST00000361507.4:c.1060C>T	p.Arg354Cys	p.R354C	ENST00000361507	NM_080491.2	354	Cgc/Tgc																																																																															
POLE	5426	MSKCC	GRCh37	12	133241951	133241951	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	88	368	0	ENST00000320574.5:c.2405A>G	p.Asp802Gly	p.D802G	ENST00000320574	NM_006231.2	802	gAc/gGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445141	49445141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	110	516	0	ENST00000301067.7:c.2325G>T	p.Glu775Asp	p.E775D	ENST00000301067	NM_003482.3	775	gaG/gaT																																																																															
FLT3	2322	MSKCC	GRCh37	13	28623882	28623882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	94	362	0	ENST00000241453.7:c.772C>T	p.Pro258Ser	p.P258S	ENST00000241453	NM_004119.2	258	Cca/Tca																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281587	49281587	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	81	391	0	ENST00000282018.3:c.634C>G	p.Leu212Val	p.L212V	ENST00000282018	NM_020377.2	212	Ctg/Gtg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641002	3641002	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	115	480	0	ENST00000294008.3:c.2637G>A	p.Trp879Ter	p.W879*	ENST00000294008	NM_032444.2	879	tgG/tgA																																																																															
FANCA	2175	MSKCC	GRCh37	16	89809334	89809335	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	101	386	0	ENST00000389301.3:c.3638dup	p.Glu1214Ter	p.E1214*	ENST00000389301	NM_000135.2	1213	cct/ccCt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16052810	16052810	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	27	170	0	ENST00000268712.3:c.864del	p.Lys288AsnfsTer38	p.K288Nfs*38	ENST00000268712	NM_006311.3	288	aaA/aa																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7976222	7976222	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	59	350	0	ENST00000319144.4:c.1973del	p.Pro658ArgfsTer5	p.P658Rfs*5	ENST00000319144	NM_001139.2	658	cCg/cg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218101	36218102	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	77	346	0	ENST00000222270.7:c.4049_4050del	p.Tyr1350Ter	p.Y1350*	ENST00000222270	NM_014727.1	1350	TAt/t																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4097288	4097288	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs775489626		P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	84	272	0	ENST00000262948.5:c.973A>G	p.Ile325Val	p.I325V	ENST00000262948	NM_030662.3	325	Att/Gtt																																																																															
CIC	23152	MSKCC	GRCh37	19	42795739	42795739	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	70	470	6	ENST00000575354.2:c.2732del	p.Pro911ArgfsTer13	p.P911Rfs*13	ENST00000575354	NM_015125.3	910	Ccc/cc																																																																															
ATR	545	MSKCC	GRCh37	3	142272096	142272097	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	63	272	0	ENST00000350721.4:c.2777dup	p.Ser927GlnfsTer4	p.S927Qfs*4	ENST00000350721	NM_001184.3	926	ttc/ttTc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864392	162864392	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	89	331	0	ENST00000366898.1:c.121T>A	p.Leu41Met	p.L41M	ENST00000366898	NM_004562.2	41	Ttg/Atg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679853	30679853	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	93	507	0	ENST00000376406.3:c.1866G>T	p.Glu622Asp	p.E622D	ENST00000376406	NM_014641.2	622	gaG/gaT																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324913	31324914	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	55	277	0	ENST00000412585.2:c.22dup	p.Thr8AsnfsTer91	p.T8Nfs*91	ENST00000412585	NM_005514.6	8	acc/aAcc																																																																															
CDK6	1021	MSKCC	GRCh37	7	92404030	92404030	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	75	268	0	ENST00000265734.4:c.349G>T	p.Val117Leu	p.V117L	ENST00000265734	NM_001259.6	117	Gtg/Ttg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44732808	44732808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	62	155	0	ENST00000377967.4:c.11G>A	p.Cys4Tyr	p.C4Y	ENST00000377967	NM_021140.2	4	tGc/tAc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223598	53223598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	34	204	0	ENST00000375401.3:c.3761G>A	p.Arg1254His	p.R1254H	ENST00000375401	NM_004187.3	1254	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	76	447	0	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25991668	25991668	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0080754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	45	467	0	ENST00000435504.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000435504		192	Cag/Tag																																																																															
GNB1	2782	MSKCC	GRCh37	1	1721943	1721943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	35	445	0	ENST00000378609.4:c.590G>A	p.Arg197Lys	p.R197K	ENST00000378609	NM_002074.3	197	aGa/aAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432545	49432545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	99	530	0	ENST00000301067.7:c.8594G>A	p.Gly2865Asp	p.G2865D	ENST00000301067	NM_003482.3	2865	gGt/gAt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133469	55133469	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	77	404	0	ENST00000257290.5:c.773T>C	p.Ile258Thr	p.I258T	ENST00000257290	NM_006206.4	258	aTc/aCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0080756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	251	557	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0080756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	190	350	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857926	9857926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	71	484	0	ENST00000330684.3:c.3475C>T	p.Arg1159Cys	p.R1159C	ENST00000330684	NM_001134407.1	1159	Cgc/Tgc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923850	39923850	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs760373288		P-0080756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	186	509	0	ENST00000378444.4:c.3241G>A	p.Glu1081Lys	p.E1081K	ENST00000378444	NM_001123385.1	1081	Gag/Aag																																																																															
POLE	5426	MSKCC	GRCh37	12	133238207	133238207	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369751686		P-0080756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	63	403	0	ENST00000320574.5:c.2770C>T	p.Arg924Cys	p.R924C	ENST00000320574	NM_006231.2	924	Cgc/Tgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624295	89624296	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GACTT			P-0080756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	106	303	0	ENST00000371953.3:c.73_77dup	p.Tyr27Ter	p.Y27*	ENST00000371953	NM_000314.4	23	-/GACTT																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020800	37020800	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0080756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	258	356	0	ENST00000358127.4:c.47-2A>G		p.X16_splice	ENST00000358127	NM_001280556.1	16																																																																																
FANCA	2175	MSKCC	GRCh37	16	89871701	89871701	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	112	364	0	ENST00000389301.3:c.696G>C	p.Arg232Ser	p.R232S	ENST00000389301	NM_000135.2	232	agG/agC																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63985156	63985156	+	3_prime_UTR_variant	3'UTR	SNP	G	G	T			P-0080756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	81	418	0	ENST00000295900.6:c.*13G>T			ENST00000295900	NM_000333.3																																																																																	
TP53BP1	7158	MSKCC	GRCh37	15	43713264	43713264	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	79	453	0	ENST00000382044.4:c.4209del	p.Arg1405GlufsTer23	p.R1405Efs*23	ENST00000382044	NM_001141980.1	1403	cgT/cg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061140	38061141	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCGCTT	rs773567107		P-0080757-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	132	444	0	ENST00000250448.2:c.843_848dup	p.Ser282_Gly283dup	p.S282_G283dup	ENST00000250448	NM_004496.3	282	ggg/ggAAGCGGg																																																																															
PHF6	84295	MSKCC	GRCh37	X	133547677	133547677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080757-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	177	323	0	ENST00000332070.3:c.575G>A	p.Ser192Asn	p.S192N	ENST00000332070	NM_032458.2	192	aGt/aAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	46	264	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0080758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	42	337	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112173995	112173995	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0080758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	39	409	0	ENST00000257430.4:c.2704G>T	p.Glu902Ter	p.E902*	ENST00000257430	NM_000038.5	902	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175648	112175648	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	28	462	0	ENST00000257430.4:c.4358del	p.Pro1453LeufsTer20	p.P1453Lfs*20	ENST00000257430	NM_000038.5	1453	Cct/ct																																																																															
FLCN	201163	MSKCC	GRCh37	17	17118498	17118498	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0080758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	55	504	0	ENST00000285071.4:c.1432+1G>T		p.X478_splice	ENST00000285071	NM_144997.5	478																																																																																
TGFBR2	7048	MSKCC	GRCh37	3	30648452	30648452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	30	364	0	ENST00000359013.4:c.77C>T	p.Pro26Leu	p.P26L	ENST00000359013	NM_001024847.2	26	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0080764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	16	350	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0080764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	29	206	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0080765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	73	190	0				ENST00000310581	NM_198253.2																																																																																	
PTPN11	5781	MSKCC	GRCh37	12	112926888	112926888	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs397507546		P-0080765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	58	277	0	ENST00000351677.2:c.1508G>T	p.Gly503Val	p.G503V	ENST00000351677	NM_002834.3	503	gGg/gTg																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14380346	14380346	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	585	141	0	ENST00000256196.4:c.71G>T	p.Gly24Val	p.G24V	ENST00000256196		24	gGc/gTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041267	47041267	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0080765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	73	140	0	ENST00000329236.7:c.1459+2T>C		p.X487_splice	ENST00000329236	NM_001204466.1	487																																																																																
PTCH1	5727	MSKCC	GRCh37	9	98218633	98218633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	103	295	0	ENST00000331920.6:c.3231G>T	p.Lys1077Asn	p.K1077N	ENST00000331920	NM_000264.3	1077	aaG/aaT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295705	212295705	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	57	227	0	ENST00000342788.4:c.2608G>C	p.Gly870Arg	p.G870R	ENST00000342788	NM_005235.2	870	Gga/Cga																																																																															
MAX	4149	MSKCC	GRCh37	14	65544657	65544657	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	139	318	0	ENST00000358664.4:c.269G>T	p.Arg90Leu	p.R90L	ENST00000358664	NM_002382.4	90	cGg/cTg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621885	1621885	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	92	292	0	ENST00000344749.5:c.907G>C	p.Gly303Arg	p.G303R	ENST00000344749	NM_001136139.2	303	Ggc/Cgc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056835	180056835	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0080765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	91	253	0	ENST00000261937.6:c.677G>T	p.Gly226Val	p.G226V	ENST00000261937	NM_182925.4	226	gGc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0080767-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	287	391	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0080767-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	46	298	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36934797	36934797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080767-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	103	322	0	ENST00000361632.4:c.1536G>A	p.Met512Ile	p.M512I	ENST00000361632		512	atG/atA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230872	66230872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080767-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	100	283	0	ENST00000273854.3:c.2099G>A	p.Arg700Lys	p.R700K	ENST00000273854	NM_004439.5	700	aGa/aAa																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88678991	88678991	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080767-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			45	43	83	0	ENST00000372037.3:c.931T>G	p.Tyr311Asp	p.Y311D	ENST00000372037	NM_004329.2	311	Tac/Gac																																																																															
TCEB1	6921	MSKCC	GRCh37	8	74868262	74868262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080767-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	43	153	0	ENST00000518127.1:c.32G>T	p.Cys11Phe	p.C11F	ENST00000518127	NM_001204857.1	11	tGt/tTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573594	48573594	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080767-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	65	326	0	ENST00000342988.3:c.178G>C	p.Ala60Pro	p.A60P	ENST00000342988	NM_005359.5	60	Gct/Cct																																																																															
AURKA	6790	MSKCC	GRCh37	20	54958107	54958107	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080767-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	22	285	0	ENST00000312783.6:c.500C>A	p.Ala167Asp	p.A167D	ENST00000312783	NM_198436.1	167	gCt/gAt																																																																															
ATM	472	MSKCC	GRCh37	11	108224594	108224594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658519		P-0080770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	35	283	0	ENST00000278616.4:c.8773G>A	p.Gly2925Ser	p.G2925S	ENST00000278616	NM_000051.3	2925	Ggt/Agt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	20	210	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144497	11144499	+	missense_variant	Missense_Mutation	ONP	CCG	CCG	TCT			P-0080770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	17	183	0	ENST00000344626.4:c.3829_3831delinsTCT	p.Pro1277Ser	p.P1277S	ENST00000344626	NM_003072.3	1277	CCG/TCT																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643599	38643599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	19	283	0	ENST00000299084.4:c.1069G>A	p.Asp357Asn	p.D357N	ENST00000299084	NM_152594.2	357	Gac/Aac																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799326	88799326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	20	251	0	ENST00000360948.2:c.59G>A	p.Ser20Asn	p.S20N	ENST00000360948	NM_001012338.2	20	aGc/aAc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259040	89259040	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	26	245	0	ENST00000336596.2:c.184T>A	p.Tyr62Asn	p.Y62N	ENST00000336596	NM_005233.5	62	Tac/Aac																																																																															
FLT4	2324	MSKCC	GRCh37	5	180055954	180055954	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	10	235	0	ENST00000261937.6:c.1031A>T	p.Glu344Val	p.E344V	ENST00000261937	NM_182925.4	344	gAg/gTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522185	157522185	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	32	271	0	ENST00000346085.5:c.4457A>G	p.Gln1486Arg	p.Q1486R	ENST00000346085	NM_020732.3	1486	cAg/cGg																																																																															
EP300	2033	MSKCC	GRCh37	22	41573873	41573873	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0080793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	207	442	0	ENST00000263253.7:c.6158A>C	p.Asn2053Thr	p.N2053T	ENST00000263253	NM_001429.3	2053	aAc/aCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0080793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	215	464	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs387906846		P-0080793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	251	585	0	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0080793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	103	263	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630566	67630567	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0080793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	140	402	0	ENST00000272342.5:c.758dup	p.Pro254AlafsTer13	p.P254Afs*13	ENST00000272342	NM_019002.3	251	aca/acAa																																																																															
ATRX	546	MSKCC	GRCh37	X	76939054	76939054	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	162	390	0	ENST00000373344.5:c.1694T>A	p.Ile565Asn	p.I565N	ENST00000373344	NM_000489.3	565	aTt/aAt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966724	25966724	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0080793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	183	431	0	ENST00000435504.4:c.2482A>T	p.Arg828Ter	p.R828*	ENST00000435504		828	Aga/Tga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164744	47164744	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0080437-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	87	544	0	ENST00000409792.3:c.1382C>G	p.Ser461Ter	p.S461*	ENST00000409792	NM_014159.6	461	tCa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080437-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			66	63	281	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47059132	47059132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080437-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	90	423	0	ENST00000409792.3:c.7529G>A	p.Arg2510His	p.R2510H	ENST00000409792	NM_014159.6	2510	cGc/cAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164696	47164696	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080437-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	80	524	0	ENST00000409792.3:c.1430C>G	p.Ser477Cys	p.S477C	ENST00000409792	NM_014159.6	477	tCc/tGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106376	27106377	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0080437-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	84	567	2	ENST00000324856.7:c.5987_5988delinsTT	p.Gly1996Val	p.G1996V	ENST00000324856	NM_006015.4	1996	gGC/gTT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164705	47164705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080437-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	80	524	0	ENST00000409792.3:c.1421C>T	p.Ser474Leu	p.S474L	ENST00000409792	NM_014159.6	474	tCa/tTa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005536	150005536	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080437-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	84	501	1	ENST00000253339.5:c.689A>G	p.Asn230Ser	p.N230S	ENST00000253339		230	aAc/aGc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923103	39923103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080437-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	111	431	0	ENST00000378444.4:c.3605G>T	p.Gly1202Val	p.G1202V	ENST00000378444	NM_001123385.1	1202	gGg/gTg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0079673-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			313	163	287	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108115650	108115650	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079673-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			297	65	298	0	ENST00000278616.4:c.798G>A	p.Trp266Ter	p.W266*	ENST00000278616	NM_000051.3	266	tgG/tgA																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109743	115109744	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGCAT			P-0079673-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			462	102	307	0	ENST00000257566.3:c.2134_2135insATGCG	p.Ala712AspfsTer179	p.A712Dfs*179	ENST00000257566	NM_016569.3	712	gcg/gATGCGcg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874513	151874518	+	frameshift_variant	Frame_Shift_Del	DEL	TAAATT	TAAATT	A			P-0079673-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			512	163	355	0	ENST00000262189.6:c.8020_8025delinsT	p.Asn2674SerfsTer8	p.N2674Sfs*8	ENST00000262189	NM_170606.2	2674	AATTTA/T																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061223	38061228	+	inframe_deletion	In_Frame_Del	DEL	TCTCGA	TCTCGA	-			P-0080030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	77	261	0	ENST00000250448.2:c.761_766del	p.Phe254_Asn256delinsTyr	p.F254_N256delinsY	ENST00000250448	NM_004496.3	254	tTCGAGAac/tac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0080122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			81	186	340	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0080122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	8	341	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424321	47424321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	134	411	0	ENST00000404338.3:c.2389G>A	p.Asp797Asn	p.D797N	ENST00000404338	NM_004491.4	797	Gat/Aat																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0080330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	8	329	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
MYC	4609	MSKCC	GRCh37	8	128752673	128752675	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0080330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	21	379	0	ENST00000377970.2:c.838_840del	p.Val280del	p.V280del	ENST00000377970	NM_002467.4	278	gaTGTt/gat																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922769	44922769	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	39	188	0	ENST00000377967.4:c.1630C>T	p.Gln544Ter	p.Q544*	ENST00000377967	NM_021140.2	544	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532893	187532893	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	40	352	0	ENST00000441802.2:c.9500C>G	p.Ser3167Cys	p.S3167C	ENST00000441802	NM_005245.3	3167	tCt/tGt																																																																															
SYK	6850	MSKCC	GRCh37	9	93650107	93650107	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	43	359	0	ENST00000375746.1:c.1658G>C	p.Ser553Thr	p.S553T	ENST00000375746	NM_001174167.1	553	aGc/aCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0080339-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	26	428	1	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11168331	11168331	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080339-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	17	319	0	ENST00000361445.4:c.7541C>G	p.Ser2514Cys	p.S2514C	ENST00000361445	NM_004958.3	2514	tCt/tGt																																																																															
AKT2	208	MSKCC	GRCh37	19	40742166	40742166	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0080339-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	32	433	0	ENST00000392038.2:c.958G>A	p.Glu320Lys	p.E320K	ENST00000392038	NM_001626.4	320	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509908	187509908	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080339-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	35	457	0	ENST00000441802.2:c.13605G>T	p.Met4535Ile	p.M4535I	ENST00000441802	NM_005245.3	4535	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0080342-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	56	411	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0080342-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	60	308	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46254617	46254617	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080342-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	75	349	0	ENST00000334344.6:c.4807G>C	p.Val1603Leu	p.V1603L	ENST00000334344	NM_152641.2	1603	Gtg/Ctg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0080355-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	34	477	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604656	48604656	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080355-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	61	407	0	ENST00000342988.3:c.1478A>T	p.Asp493Val	p.D493V	ENST00000342988	NM_005359.5	493	gAt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207203	1207203	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1131690950		P-0080355-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	30	357	0	ENST00000326873.7:c.290+1G>A		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																																
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0080355-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	50	459	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343837	118343837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080355-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	46	502	0	ENST00000534358.1:c.1963C>T	p.Pro655Ser	p.P655S	ENST00000534358	NM_005933.3	655	Cca/Tca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426598	49426598	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0080355-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	36	602	0	ENST00000301067.7:c.11890C>T	p.Gln3964Ter	p.Q3964*	ENST00000301067	NM_003482.3	3964	Cag/Tag																																																																															
SOS1	6654	MSKCC	GRCh37	2	39249819	39249819	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080355-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	28	361	0	ENST00000402219.2:c.1750G>C	p.Glu584Gln	p.E584Q	ENST00000402219	NM_005633.3	584	Gag/Cag																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46281271	46281271	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080355-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	19	387	0	ENST00000371998.3:c.4068C>G	p.Ile1356Met	p.I1356M	ENST00000371998		1356	atC/atG																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288386	21288386	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080355-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	38	493	0	ENST00000354336.3:c.631C>G	p.Gln211Glu	p.Q211E	ENST00000354336	NM_005207.3	211	Cag/Gag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581279	48581280	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0080358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	141	436	0	ENST00000342988.3:c.584dup	p.Tyr195Ter	p.Y195*	ENST00000342988	NM_005359.5	195	tac/tAac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0080358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	316	309	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ATM	472	MSKCC	GRCh37	11	108129739	108129740	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0080358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	110	402	0	ENST00000278616.4:c.2408dup	p.Leu804ProfsTer11	p.L804Pfs*11	ENST00000278616	NM_000051.3	801	-/T																																																																															
ATM	472	MSKCC	GRCh37	11	108154961	108154962	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0080358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	56	354	0	ENST00000278616.4:c.3755dup	p.Tyr1252Ter	p.Y1252*	ENST00000278616	NM_000051.3	1252	tat/tAat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0080359-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	256	376	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175417	112175418	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0080359-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	556	367	0	ENST00000257430.4:c.4127_4128del	p.Tyr1376CysfsTer9	p.Y1376Cfs*9	ENST00000257430	NM_000038.5	1376	TAt/t																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080359-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	205	286	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198268330	198268330	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080359-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	164	328	0	ENST00000335508.6:c.1698A>T	p.Leu566Phe	p.L566F	ENST00000335508	NM_012433.2	566	ttA/ttT																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912149	114912149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	57	331	0	ENST00000543371.1:c.1219C>T	p.Arg407Ter	p.R407*	ENST00000543371	NM_001198531.1	407	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0080378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	87	286	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0080378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	100	484	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0080378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	96	289	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175324	112175324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1211642532		P-0080378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	118	387	0	ENST00000257430.4:c.4033G>T	p.Glu1345Ter	p.E1345*	ENST00000257430	NM_000038.5	1345	Gaa/Taa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	341278	341278	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780541699		P-0080379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	40	318	0	ENST00000262320.3:c.2206C>T	p.Arg736Trp	p.R736W	ENST00000262320	NM_003502.3	736	Cgg/Tgg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115738	8115738	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	146	377	0	ENST00000346208.3:c.1084C>T	p.Gln362Ter	p.Q362*	ENST00000346208		362	Cag/Tag																																																																															
CBFB	865	MSKCC	GRCh37	16	67070623	67070623	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	144	418	0	ENST00000412916.2:c.247C>T	p.Arg83Ter	p.R83*	ENST00000412916		83	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs17849781		P-0080397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	109	429	0	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473723	67473723	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223740		P-0080397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	52	386	0	ENST00000327367.4:c.803G>A	p.Arg268His	p.R268H	ENST00000327367	NM_005902.3	268	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0080397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	104	380	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																																																															
CD79A	973	MSKCC	GRCh37	19	42383691	42383691	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782150073		P-0080397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	49	386	0	ENST00000221972.3:c.466G>A	p.Ala156Thr	p.A156T	ENST00000221972	NM_021601.3	156	Gcg/Acg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	121	314	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488730	212488730	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1358626425		P-0080397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	9	471	0	ENST00000342788.4:c.2119C>G	p.Gln707Glu	p.Q707E	ENST00000342788	NM_005235.2	707	Caa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0080399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	234	447	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0080399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	48	255	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217147	2217785	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCGAGTTGCTAGCAGGAGGGCTTGTCCTAGTTGACCTTGGGGCACGGTGAGGTACTGGGGCTGACCTGGAGTAGGATGTTGTGGCAGAGTTGGGGGCAACCAGTAAGGACAGGTCACAGGTGACGTTGGGCAGGTGCCATGGAGGACATGGGGTTTGTCAGGGTGTCCCTGATGCCTCTTAGTTCTCAGTGACGGACGGCAAGTGCTGGTAGAGACACAGAGCCCAGTTTGGGAGGCCGCTGCCCATGAGGACTTCCCCGGGGGCACTGGCCTGTGTGCACAGGGATGGAGAGGGAAGGACGGTGACGTTGCATGGACTTGGCAGTGATGGATGTGGGCCCTGGGAGGCTTGGTGGCCCCACGGGTGACTGCCCACCGAGCCGGGCGGGCAGGCTGGAGGGGACAGATGGGCATTGCTTTCAGACACCAGGAGCGTGCCGTCCCTCTGGAGTGTCCCAAAGCCGGTGTCCAGGAGGGCCTGACTGCGTGGGGAAGGTTGCAGGGCCTTGGCAGCGTGGGGGCCGCCTTGAGAGAGCTGTAGCAGGCCCCCGTCCTGTGGCTGTGGTCCCTGTGTCCTGGAGGGGTTTGTTGACCCACGACTGGGGGTCGGGCCTTCGTCTGCAGGGCCTGAGAGAGCGC	GCGAGTTGCTAGCAGGAGGGCTTGTCCTAGTTGACCTTGGGGCACGGTGAGGTACTGGGGCTGACCTGGAGTAGGATGTTGTGGCAGAGTTGGGGGCAACCAGTAAGGACAGGTCACAGGTGACGTTGGGCAGGTGCCATGGAGGACATGGGGTTTGTCAGGGTGTCCCTGATGCCTCTTAGTTCTCAGTGACGGACGGCAAGTGCTGGTAGAGACACAGAGCCCAGTTTGGGAGGCCGCTGCCCATGAGGACTTCCCCGGGGGCACTGGCCTGTGTGCACAGGGATGGAGAGGGAAGGACGGTGACGTTGCATGGACTTGGCAGTGATGGATGTGGGCCCTGGGAGGCTTGGTGGCCCCACGGGTGACTGCCCACCGAGCCGGGCGGGCAGGCTGGAGGGGACAGATGGGCATTGCTTTCAGACACCAGGAGCGTGCCGTCCCTCTGGAGTGTCCCAAAGCCGGTGTCCAGGAGGGCCTGACTGCGTGGGGAAGGTTGCAGGGCCTTGGCAGCGTGGGGGCCGCCTTGAGAGAGCTGTAGCAGGCCCCCGTCCTGTGGCTGTGGTCCCTGTGTCCTGGAGGGGTTTGTTGACCCACGACTGGGGGTCGGGCCTTCGTCTGCAGGGCCTGAGAGAGCGC	-			P-0080399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	121	278	0	ENST00000398665.3:c.2544+60_2561del		p.X848_splice	ENST00000398665	NM_032482.2	848																																																																																
SRC	6714	MSKCC	GRCh37	20	36024615	36024615	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368312821		P-0080399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	101	330	1	ENST00000358208.4:c.604G>A	p.Val202Met	p.V202M	ENST00000358208		202	Gtg/Atg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11136467	11136977	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTCCTGCTGCGTCTCTTTGGCTCACTGGCTTTTCTCACGTTGCGGGGCGTCAAGAGTCACCACCGTCTTCAGTGAAGTGTGGGGGAGTCAGAACCCTTTTTGGTCATGGTGGCTTTGAGAATCTGGGTTCTTAGAAGCATGCATATGTTCGTGTTTCTTGGTGTAAAGTGTCAGGGTCGTTGGAGACCGCCTGCTGCCCCGAGAGCCCCTGGGGCTGTCTCAGCACCCTGAGCGTGGCTGTGGCCCCATGACGTCCTCGTGCATTCAGGGTGTGAAGAGTGCTGTATGGGATGTCCTTTCCTTCGTTGGAGGAGTGTGAGGGAAAGGATGTCAGTGGACTAAGAAAGATGGTTTTGGCATCTGTGTCTGGTCTCAGAGCCGCCGTGGGCCCGTGCCGAGCACACAGTGTGGGGGCTTTGTCCTCTGAGCACGAGCGGTGTGTGCGGACCGCAGCGGGGCCCGGTGGCCTGCTCCTGCCTGTCACTGACCCCTCTCTCCTTGCCTTGCAGGA	GTCCTGCTGCGTCTCTTTGGCTCACTGGCTTTTCTCACGTTGCGGGGCGTCAAGAGTCACCACCGTCTTCAGTGAAGTGTGGGGGAGTCAGAACCCTTTTTGGTCATGGTGGCTTTGAGAATCTGGGTTCTTAGAAGCATGCATATGTTCGTGTTTCTTGGTGTAAAGTGTCAGGGTCGTTGGAGACCGCCTGCTGCCCCGAGAGCCCCTGGGGCTGTCTCAGCACCCTGAGCGTGGCTGTGGCCCCATGACGTCCTCGTGCATTCAGGGTGTGAAGAGTGCTGTATGGGATGTCCTTTCCTTCGTTGGAGGAGTGTGAGGGAAAGGATGTCAGTGGACTAAGAAAGATGGTTTTGGCATCTGTGTCTGGTCTCAGAGCCGCCGTGGGCCCGTGCCGAGCACACAGTGTGGGGGCTTTGTCCTCTGAGCACGAGCGGTGTGTGCGGACCGCAGCGGGGCCCGGTGGCCTGCTCCTGCCTGTCACTGACCCCTCTCTCCTTGCCTTGCAGGA	-			P-0080399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			0	47	5	0	ENST00000344626.4:c.3168+288_3175del		p.X1056_splice	ENST00000344626	NM_003072.3	1056																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0080400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	167	472	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0080400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	161	293	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120236	70120239	+	frameshift_variant	Frame_Shift_Del	DEL	ACTC	ACTC	TGA			P-0080400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	107	396	0	ENST00000245479.2:c.1238_1241delinsTGA	p.His413LeufsTer57	p.H413Lfs*57	ENST00000245479	NM_000346.3	413	cACTCg/cTGAg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712599	43712599	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	77	510	0	ENST00000382044.4:c.4585G>T	p.Glu1529Ter	p.E1529*	ENST00000382044	NM_001141980.1	1529	Gaa/Taa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515094	31515094	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0080400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	177	327	0	ENST00000344624.3:c.1290+1G>T		p.X430_splice	ENST00000344624		430																																																																																
ANKRD11	29123	MSKCC	GRCh37	16	89349543	89349543	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	84	512	0	ENST00000301030.4:c.3407A>T	p.Lys1136Met	p.K1136M	ENST00000301030	NM_001256183.1	1136	aAg/aTg																																																																															
ATM	472	MSKCC	GRCh37	11	108178638	108178638	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	52	354	0	ENST00000278616.4:c.5689T>C	p.Phe1897Leu	p.F1897L	ENST00000278616	NM_000051.3	1897	Ttc/Ctc																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6213171	6213171	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	42	429	0	ENST00000252674.7:c.1562T>C	p.Leu521Pro	p.L521P	ENST00000252674	NM_005934.3	521	cTg/cCg																																																																															
APLNR	187	MSKCC	GRCh37	11	57004171	57004171	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	T	T	C			P-0080400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	27	406	1	ENST00000257254.3:c.308A>G	p.Lys103Arg	p.K103R	ENST00000257254		103	aAg/aGg																																																																															
ABL1	25	MSKCC	GRCh37	9	133748392	133748424	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GGAGTACCTGGAGAAGAAAAACTTCATCCACAG	GGAGTACCTGGAGAAGAAAAACTTCATCCACAG	-			P-0078866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	73	355	0	ENST00000318560.5:c.1054_1085+1del		p.MEYLEKKNFIHRdel	ENST00000318560	NM_005157.4	351	atGGAGTACCTGGAGAAGAAAAACTTCATCCACAGa/ata																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060866	38060884	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGAGAGGCGGGCACAGA	GGTGAGAGGCGGGCACAGA	-			P-0078866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			804	314	496	0	ENST00000250448.2:c.1105_1123del	p.Ser369ArgfsTer14	p.S369Rfs*14	ENST00000250448	NM_004496.3	369	TCTGTGCCCGCCTCTCACCcg/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577573	7577575	+	inframe_deletion	In_Frame_Del	DEL	GTA	GTA	-			P-0078866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	184	356	0	ENST00000269305.4:c.706_708del	p.Tyr236del	p.Y236del	ENST00000269305	NM_001126112.2	236	TAC/-																																																																															
STK11	6794	MSKCC	GRCh37	19	1207168	1207168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			510	63	477	0	ENST00000326873.7:c.256C>T	p.Arg86Ter	p.R86*	ENST00000326873	NM_000455.4	86	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0079863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	15	306	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724598	162724598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080052-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			115	11	339	0	ENST00000367921.3:c.370C>T	p.Arg124Trp	p.R124W	ENST00000367921	NM_006182.2	124	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7573991	7573991	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080052-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			8	33	263	0	ENST00000269305.4:c.1036G>T	p.Glu346Ter	p.E346*	ENST00000269305	NM_001126112.2	346	Gag/Tag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2951925	2951925	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147381531		P-0080052-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			97	26	309	0	ENST00000396946.4:c.3025G>A	p.Val1009Ile	p.V1009I	ENST00000396946	NM_032415.4	1009	Gtc/Atc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0080052-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			80	537	363	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948728	71948728	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080052-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			112	33	396	0	ENST00000298229.2:c.3440C>G	p.Pro1147Arg	p.P1147R	ENST00000298229	NM_001567.3	1147	cCa/cGa																																																																															
TERT	7015	MSKCC	GRCh37	5	1296135	1296135	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0080052-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			67	106	381	0				ENST00000310581	NM_198253.2																																																																																	
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0080196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	10	314	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	16	335	0	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913396		P-0080196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	10	404	0	ENST00000349496.5:c.95A>G	p.Asp32Gly	p.D32G	ENST00000349496	NM_001904.3	32	gAc/gGc																																																																															
CCND1	595	MSKCC	GRCh37	11	69466021	69466021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	24	400	0	ENST00000227507.2:c.859C>A	p.Pro287Thr	p.P287T	ENST00000227507	NM_053056.2	287	Ccc/Acc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729097	66729102	+	inframe_deletion	In_Frame_Del	DEL	AGATCA	AGATCA	-			P-0080196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	11	402	0	ENST00000307102.5:c.306_311del	p.Ile103_Lys104del	p.I103_K104del	ENST00000307102	NM_002755.3	102	gAGATCAaa/gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0080201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	78	390	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0080201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	60	422	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs869025608		P-0080201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	50	321	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																															
CDK8	1024	MSKCC	GRCh37	13	26927961	26927961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	180	336	0	ENST00000381527.3:c.400C>T	p.Gln134Ter	p.Q134*	ENST00000381527	NM_001260.1	134	Cag/Tag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288799	15288799	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764992581		P-0080201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	18	218	0	ENST00000263388.2:c.3940G>A	p.Ala1314Thr	p.A1314T	ENST00000263388	NM_000435.2	1314	Gcc/Acc																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811729	102811729	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	52	412	1	ENST00000307046.8:c.455G>A	p.Trp152Ter	p.W152*	ENST00000307046	NM_001111285.1	152	tGg/tAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853406	151853406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	35	336	0	ENST00000262189.6:c.11696C>A	p.Thr3899Lys	p.T3899K	ENST00000262189	NM_170606.2	3899	aCa/aAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951964	178951964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	22	397	0	ENST00000263967.3:c.3019G>C	p.Gly1007Arg	p.G1007R	ENST00000263967	NM_006218.2	1007	Ggc/Cgc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060580	38060580	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	10	530	0	ENST00000250448.2:c.1409del	p.Asn470ThrfsTer14	p.N470Tfs*14	ENST00000250448	NM_004496.3	470	aAc/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0080210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	129	472	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478786	56478786	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1324972550		P-0080210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	141	306	0	ENST00000267101.3:c.242G>A	p.Arg81Gln	p.R81Q	ENST00000267101	NM_001982.3	81	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	77	276	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626957	14626957	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs764609404		P-0080210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	118	452	1	ENST00000254322.2:c.818T>C	p.Val273Ala	p.V273A	ENST00000254322	NM_006145.1	273	gTc/gCc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0080260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	116	392	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0080260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	107	358	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0080260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	101	251	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911499	114911500	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0080260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	115	333	0	ENST00000543371.1:c.1022dup	p.Glu342GlyfsTer14	p.E342Gfs*14	ENST00000543371	NM_001198531.1	339	-/A																																																																															
GAB2	9846	MSKCC	GRCh37	11	77936216	77936216	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373502813		P-0080260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	97	315	0	ENST00000361507.4:c.1240C>T	p.Arg414Cys	p.R414C	ENST00000361507	NM_080491.2	414	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112174602	112174602	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0080260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	97	418	0	ENST00000257430.4:c.3311C>G	p.Ser1104Ter	p.S1104*	ENST00000257430	NM_000038.5	1104	tCa/tGa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	420160	420160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	98	374	0	ENST00000399788.2:c.3107G>T	p.Arg1036Leu	p.R1036L	ENST00000399788	NM_001042603.1	1036	cGt/cTt																																																																															
MGA	23269	MSKCC	GRCh37	15	42042460	42042460	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	24	654	0	ENST00000219905.7:c.6655C>T	p.Gln2219Ter	p.Q2219*	ENST00000219905	NM_001164273.1	2219	Caa/Taa																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424614	47424639	+	frameshift_variant	Frame_Shift_Del	DEL	TGTCCTGGACAATGACTTAAGTAGGG	TGTCCTGGACAATGACTTAAGTAGGG	-			P-0080271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	27	623	0	ENST00000404338.3:c.2682_2707del	p.Asp894GlufsTer5	p.D894Efs*5	ENST00000404338	NM_004491.4	894	gaTGTCCTGGACAATGACTTAAGTAGGGaa/gaaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27058007	27058007	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778345898		P-0080275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	101	667	0	ENST00000324856.7:c.1715C>T	p.Thr572Met	p.T572M	ENST00000324856	NM_006015.4	572	aCg/aTg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170013719	170013719	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1388201066		P-0080275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	67	430	0	ENST00000295797.4:c.1438C>T	p.Arg480Cys	p.R480C	ENST00000295797	NM_002740.5	480	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	60	419	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7590694	7590694	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0080275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	155	559	0	ENST00000269305.4:c.-29+1G>C		p.X10_splice	ENST00000269305	NM_001126112.2	10																																																																																
CARM1	10498	MSKCC	GRCh37	19	11031340	11031340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	60	705	0	ENST00000327064.4:c.1340G>A	p.Ser447Asn	p.S447N	ENST00000327064	NM_199141.1	447	aGc/aAc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876358	35876358	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			901	57	560	0	ENST00000303115.3:c.1150T>A	p.Ser384Thr	p.S384T	ENST00000303115	NM_002185.3	384	Tct/Act																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94224004	94224050	+	frameshift_variant	Frame_Shift_Del	DEL	TTTCCTGGGCAAGTCTTAAAATTTCATCGAGTGTTACAAACGTATCA	TTTCCTGGGCAAGTCTTAAAATTTCATCGAGTGTTACAAACGTATCA	-			P-0080277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	34	475	0	ENST00000323929.3:c.102_148del	p.Asn34LysfsTer2	p.N34Kfs*2	ENST00000323929	NM_005591.3	34	aaTGATACGTTTGTAACACTCGATGAAATTTTAAGACTTGCCCAGGAAAat/aaat																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272197	15272197	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	38	455	0	ENST00000263388.2:c.6242del	p.Gly2081AlafsTer4	p.G2081Afs*4	ENST00000263388	NM_000435.2	2081	gGc/gc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272327	15272343	+	frameshift_variant	Frame_Shift_Del	DEL	CGTGGGGACCGGGGGGG	CGTGGGGACCGGGGGGG	-			P-0080277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	40	593	0	ENST00000263388.2:c.6096_6112del	p.Ser2032ArgfsTer57	p.S2032Rfs*57	ENST00000263388	NM_000435.2	2032	agCCCCCCCGGTCCCCACGgc/aggc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0080280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	64	258	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			706	102	396	0	ENST00000269305.4:c.538G>T	p.Glu180Ter	p.E180*	ENST00000269305	NM_001126112.2	180	Gag/Tag																																																																															
TET2	54790	MSKCC	GRCh37	4	106155538	106155541	+	frameshift_variant	Frame_Shift_Del	DEL	AAGA	AAGA	-	rs1258280752		P-0080280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	56	318	0	ENST00000380013.4:c.444_447del	p.Lys148AsnfsTer3	p.K148Nfs*3	ENST00000380013	NM_001127208.2	147	AAGAaa/aa																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790800	89790800	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0080280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	42	370	0	ENST00000336032.3:c.187G>T	p.Gly63Ter	p.G63*	ENST00000336032	NM_006813.2	63	Gga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0080283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	22	397	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0080283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	67	435	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
INHBA	3624	MSKCC	GRCh37	7	41729447	41729447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	42	467	0	ENST00000242208.4:c.1082C>T	p.Thr361Met	p.T361M	ENST00000242208	NM_002192.2	361	aCg/aTg																																																																															
KLF5	688	MSKCC	GRCh37	13	73636672	73636672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	54	530	0	ENST00000377687.4:c.935C>T	p.Pro312Leu	p.P312L	ENST00000377687	NM_001730.3	312	cCa/cTa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11259648	11259648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	35	431	0	ENST00000361445.4:c.4057G>A	p.Val1353Ile	p.V1353I	ENST00000361445	NM_004958.3	1353	Gtc/Atc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098400	47098400	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	99	381	0	ENST00000409792.3:c.6874C>G	p.Gln2292Glu	p.Q2292E	ENST00000409792	NM_014159.6	2292	Caa/Gaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532860	187532860	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	142	312	0	ENST00000441802.2:c.9533C>G	p.Ser3178Cys	p.S3178C	ENST00000441802	NM_005245.3	3178	tCt/tGt																																																																															
ATM	472	MSKCC	GRCh37	11	108196110	108196110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	79	289	0	ENST00000278616.4:c.6646G>T	p.Asp2216Tyr	p.D2216Y	ENST00000278616	NM_000051.3	2216	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0080287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	554	238	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108121734	108121738	+	frameshift_variant	Frame_Shift_Del	DEL	TAGTT	TAGTT	-			P-0080287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	264	370	0	ENST00000278616.4:c.1547_1551del	p.Leu516Ter	p.L516*	ENST00000278616	NM_000051.3	514	ggTAGTTta/ggta																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880887	134880887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	222	310	0	ENST00000398015.3:c.1450G>T	p.Ala484Ser	p.A484S	ENST00000398015	NM_004441.4	484	Gcc/Tcc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95557551	95557551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	195	306	0	ENST00000343455.3:c.5516G>T	p.Arg1839Leu	p.R1839L	ENST00000343455	NM_177438.2	1839	cGg/cTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098692	47098692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	219	429	0	ENST00000409792.3:c.6582G>T	p.Met2194Ile	p.M2194I	ENST00000409792	NM_014159.6	2194	atG/atT																																																																															
MGA	23269	MSKCC	GRCh37	15	42005640	42005641	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0080287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	226	428	0	ENST00000219905.7:c.3379dup	p.Glu1127GlyfsTer21	p.E1127Gfs*21	ENST00000219905	NM_001164273.1	1126	agg/aGgg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209531	98209531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	101	345	0	ENST00000331920.6:c.4007G>T	p.Arg1336Met	p.R1336M	ENST00000331920	NM_000264.3	1336	aGg/aTg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55136829	55136829	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	119	259	0	ENST00000257290.5:c.1151C>A	p.Ala384Asp	p.A384D	ENST00000257290	NM_006206.4	384	gCt/gAt																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134106	41134106	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AA			P-0080287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	197	394	0	ENST00000379561.5:c.1522delinsTT	p.Gly508LeufsTer7	p.G508Lfs*7	ENST00000379561	NM_002015.3	508	Ggc/TTgc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099136	157099136	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	38	430	0	ENST00000346085.5:c.73C>G	p.Leu25Val	p.L25V	ENST00000346085	NM_020732.3	25	Ctc/Gtc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0080306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	132	477	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0080306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	381	376	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412104	63412104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	58	620	0	ENST00000330258.3:c.1063G>T	p.Gly355Trp	p.G355W	ENST00000330258	NM_152424.3	355	Ggg/Tgg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637020	176637021	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0080306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	141	516	0	ENST00000439151.2:c.1620_1621delinsTT	p.Asp541Tyr	p.D541Y	ENST00000439151	NM_022455.4	540	ggGGat/ggTTat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0080310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	119	732	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs794727798		P-0080310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	116	564	0	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593533	48593533	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	89	419	0	ENST00000342988.3:c.1284G>T	p.Lys428Asn	p.K428N	ENST00000342988	NM_005359.5	428	aaG/aaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	67	360	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0080347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	31	291	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112137024	112137024	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	36	277	0	ENST00000257430.4:c.778C>T	p.Gln260Ter	p.Q260*	ENST00000257430	NM_000038.5	260	Cag/Tag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89845230	89845230	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374968669		P-0080347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	48	332	0	ENST00000389301.3:c.1805C>T	p.Ala602Val	p.A602V	ENST00000389301	NM_000135.2	602	gCg/gTg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2115841	2115841	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs281875187		P-0080347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	47	303	0	ENST00000349721.2:c.3476G>A	p.Arg1159Gln	p.R1159Q	ENST00000349721	NM_003070.3	1159	cGa/cAa																																																																															
CCND2	894	MSKCC	GRCh37	12	4383262	4383262	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	32	358	0	ENST00000261254.3:c.56A>G	p.Asn19Ser	p.N19S	ENST00000261254	NM_001759.3	19	aAc/aGc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653793	89653795	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0080347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	32	244	0	ENST00000371953.3:c.92_94del	p.Asn31del	p.N31del	ENST00000371953	NM_000314.4	31	AAC/-																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790657	89790657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	42	360	0	ENST00000336032.3:c.44G>A	p.Gly15Asp	p.G15D	ENST00000336032	NM_006813.2	15	gGt/gAt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118377256	118377256	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	35	424	0	ENST00000534358.1:c.10649T>C	p.Leu3550Pro	p.L3550P	ENST00000534358	NM_005933.3	3550	cTa/cCa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119766	70119767	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	T			P-0080347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	29	276	0	ENST00000245479.2:c.768_769delinsT	p.Arg257AlafsTer22	p.R257Afs*22	ENST00000245479	NM_000346.3	256	ggGCgc/ggTgc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			51	202	343	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374991	149374991	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	166	292	0	ENST00000360632.3:c.103G>C	p.Val35Leu	p.V35L	ENST00000360632	NM_015472.4	35	Gtc/Ctc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332829	152332829	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			51	229	302	0	ENST00000206249.3:c.1135C>A	p.Leu379Ile	p.L379I	ENST00000206249	NM_000125.3	379	Cta/Ata																																																																															
POLE	5426	MSKCC	GRCh37	12	133226016	133226039	+	inframe_deletion	In_Frame_Del	DEL	CGCTGCCTCTTCCTGCGGGCGAGG	CGCTGCCTCTTCCTGCGGGCGAGG	-			P-0078867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	118	354	0	ENST00000320574.5:c.3858_3881del	p.Ala1288_Leu1295del	p.A1288_L1295del	ENST00000320574	NM_006231.2	1286	cgCCTCGCCCGCAGGAAGAGGCAGCGt/cgt																																																																															
SESN1	27244	MSKCC	GRCh37	6	109323513	109323513	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079170-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	31	359	0	ENST00000436639.2:c.313C>A	p.Gln105Lys	p.Q105K	ENST00000436639	NM_014454.2	105	Cag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0079313-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	150	375	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0079313-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			263	166	390	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519938		P-0079313-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			338	108	265	0	ENST00000263967.3:c.1034A>C	p.Asn345Thr	p.N345T	ENST00000263967	NM_006218.2	345	aAt/aCt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168803	56168804	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0079313-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	106	307	0	ENST00000399503.3:c.1658dup	p.Tyr553Ter	p.Y553*	ENST00000399503	NM_005921.1	553	tac/tAac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692826	89692826	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079313-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			109	92	97	0	ENST00000371953.3:c.313del	p.Cys105ValfsTer8	p.C105Vfs*8	ENST00000371953	NM_000314.4	104	Ttt/tt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956772	68956772	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199819614		P-0079313-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1148	96	284	0	ENST00000288368.4:c.890G>A	p.Arg297His	p.R297H	ENST00000288368	NM_024870.2	297	cGt/cAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42057230	42057230	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079313-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			316	108	324	0	ENST00000219905.7:c.7891C>T	p.Gln2631Ter	p.Q2631*	ENST00000219905	NM_001164273.1	2631	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0079390-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			433	27	292	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044971	47044971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079390-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			521	39	424	0	ENST00000329236.7:c.2063G>A	p.Arg688His	p.R688H	ENST00000329236	NM_001204466.1	688	cGc/cAc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691905	30691908	+	frameshift_variant	Frame_Shift_Del	DEL	GTTC	GTTC	-			P-0079390-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			484	31	340	0	ENST00000359013.4:c.482_485del	p.Cys161SerfsTer26	p.C161Sfs*26	ENST00000359013	NM_001024847.2	161	tGTTCc/tc																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790781	89790784	+	frameshift_variant	Frame_Shift_Del	DEL	CCTC	CCTC	-			P-0080135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	291	388	0	ENST00000336032.3:c.172_175del	p.Pro58IlefsTer3	p.P58Ifs*3	ENST00000336032	NM_006813.2	56	ttCCTC/tt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509999	187509999	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	293	418	0	ENST00000441802.2:c.13514G>T	p.Gly4505Val	p.G4505V	ENST00000441802	NM_005245.3	4505	gGc/gTc																																																																															
JUN	3725	MSKCC	GRCh37	1	59247829	59247829	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	367	428	0	ENST00000371222.2:c.914T>C	p.Val305Ala	p.V305A	ENST00000371222	NM_002228.3	305	gTg/gCg																																																																															
ATRX	546	MSKCC	GRCh37	X	76890180	76890180	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	250	149	0	ENST00000373344.5:c.4714del	p.Trp1572GlyfsTer8	p.W1572Gfs*8	ENST00000373344	NM_000489.3	1572	Tgg/gg																																																																															
JUN	3725	MSKCC	GRCh37	1	59247846	59247847	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0080139-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			796	49	632	0	ENST00000371222.2:c.896dup	p.Asn299LysfsTer11	p.N299Kfs*11	ENST00000371222	NM_002228.3	299	aac/aaAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080139-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	38	366	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0080139-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			801	103	624	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0080139-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	19	399	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	45	326	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	57	472	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	106	436	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	37	340	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	97	565	12	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	81	411	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	81	280	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577560	7577560	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057520002		P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	138	424	0	ENST00000269305.4:c.721T>C	p.Ser241Pro	p.S241P	ENST00000269305	NM_001126112.2	241	Tcc/Ccc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	106	394	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	71	521	2	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472460	88472460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	90	476	1	ENST00000360948.2:c.2095G>A	p.Gly699Ser	p.G699S	ENST00000360948	NM_001012338.2	699	Ggc/Agc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11313919	11313919	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	117	420	0	ENST00000361445.4:c.817C>T	p.Arg273Ter	p.R273*	ENST00000361445	NM_004958.3	273	Cga/Tga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168619	32168619	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	118	431	0	ENST00000375023.3:c.4304A>G	p.His1435Arg	p.H1435R	ENST00000375023	NM_004557.3	1435	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952076	178952076	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	59	469	0	ENST00000263967.3:c.3131A>T	p.Asn1044Ile	p.N1044I	ENST00000263967	NM_006218.2	1044	aAt/aTt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43705410	43705410	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764425387		P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	112	497	0	ENST00000382044.4:c.5212G>A	p.Ala1738Thr	p.A1738T	ENST00000382044	NM_001141980.1	1738	Gca/Aca																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457639	67457640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	142	619	1	ENST00000327367.4:c.455dup	p.Leu153ThrfsTer13	p.L153Tfs*13	ENST00000327367	NM_005902.3	150	ttc/ttCc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898390	63898390	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs868854400		P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	52	283	0	ENST00000295900.6:c.116A>C	p.Gln39Pro	p.Q39P	ENST00000295900	NM_000333.3	39	cAg/cCg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713814	30713814	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	163	586	0	ENST00000359013.4:c.1214T>G	p.Leu405Arg	p.L405R	ENST00000359013	NM_001024847.2	405	cTc/cGc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046495	69046495	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	58	413	0	ENST00000288368.4:c.3968T>C	p.Leu1323Pro	p.L1323P	ENST00000288368	NM_024870.2	1323	cTt/cCt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957539	1957539	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	29	470	0	ENST00000382895.3:c.2638T>C	p.Phe880Leu	p.F880L	ENST00000382895	NM_133330.2	880	Ttc/Ctc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193117088	193117088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	90	410	0	ENST00000367435.3:c.821C>T	p.Ala274Val	p.A274V	ENST00000367435	NM_024529.4	274	gCa/gTa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46240654	46240654	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	14	378	0	ENST00000334344.6:c.1514T>C	p.Val505Ala	p.V505A	ENST00000334344	NM_152641.2	505	gTa/gCa																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45796928	45796928	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	186	509	0	ENST00000372115.3:c.1360A>G	p.Thr454Ala	p.T454A	ENST00000372115	NM_001048171.1	454	Acc/Gcc																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630790	67630790	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	59	406	0	ENST00000272342.5:c.976A>G	p.Thr326Ala	p.T326A	ENST00000272342	NM_019002.3	326	Act/Gct																																																																															
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	41	459	0	ENST00000263253.7:c.4402A>G	p.Lys1468Glu	p.K1468E	ENST00000263253	NM_001429.3	1468	Aaa/Gaa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367071	15367071	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	138	524	0	ENST00000263377.2:c.1555A>G	p.Lys519Glu	p.K519E	ENST00000263377	NM_058243.2	519	Aaa/Gaa																																																																															
POLE	5426	MSKCC	GRCh37	12	133241913	133241913	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	32	447	0	ENST00000320574.5:c.2443T>G	p.Phe815Val	p.F815V	ENST00000320574	NM_006231.2	815	Ttc/Gtc																																																																															
MED12	9968	MSKCC	GRCh37	X	70354226	70354226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	27	215	0	ENST00000374080.3:c.4637C>A	p.Thr1546Lys	p.T1546K	ENST00000374080		1546	aCg/aAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245507	153245507	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	88	432	0	ENST00000281708.4:c.1684T>C	p.Ser562Pro	p.S562P	ENST00000281708	NM_033632.3	562	Tca/Cca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0080158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	47	211	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0080158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	177	346	0	ENST00000257430.4:c.4063dup	p.Ser1355PhefsTer20	p.S1355Ffs*20	ENST00000257430	NM_000038.5	1353	-/T																																																																															
FH	2271	MSKCC	GRCh37	1	241661204	241661204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	74	355	0	ENST00000366560.3:c.1457C>T	p.Ala486Val	p.A486V	ENST00000366560	NM_000143.3	486	gCt/gTt																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149375032	149375032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	46	416	0	ENST00000360632.3:c.62C>T	p.Thr21Met	p.T21M	ENST00000360632	NM_015472.4	21	aCg/aTg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49939970	49939970	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	93	447	0	ENST00000296474.3:c.1073C>A	p.Pro358His	p.P358H	ENST00000296474	NM_002447.2	358	cCt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7590052	7591074	+	splice_donor_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	CGACGGTCCTCCTCGGCCTGGCGGGCAAACCCCTGGTTTAGCACTTCTCACTTCCACGACTGACAGCCTTCAATTGGATTTTCTCCATCTAGCGGAGCCGGGGGCTGCCTGGAAAGATCGCTCCAGGAAGGACAAAGGTCCGGAAGTTGTGGGACCTTAGCAGCTTGGGCTCCCCGGATCACCCCCAAATGATCATTTCGGAATGGAGCCCCAGTTTTCACTAGGATGCCATGGGCTCTAAAATATACAGCTATGAGTTCTCAATGTTTCGAGATCCAAAAGTCTCAGACCTCAATGCTTTGTGCATCTTTTATTTCAGGGATTCCCTACGCCCAGCACCGGGTGGATGTGCAAAGAAGTACGCTTTAGGCCGGCTCAAGGTTCCCCAAAGCTCCACTCCTCTGCCTAGGCGTTCAACTTTGAGTTCGGATGGTCCTAACATCCCCATCATCTACACCCAGGTCTCCCAACAATGCAACTCCTATGATGATCCCTCTAGCCAAGCTTCCATCCCACTCACCCCCAAACTCGCTAAGTCCCCACTGCCCCACCCCCAGCCCCAGCGATTTTCCCGAGCTGAAAATACACGGAGCCGAGAGCCCGTGACTCAGAGAGGACTCATCAAGTTCAGTCAGGAGCTTACCCAATCCAGGGAAGCGTGTCACCGTCGTGGAAAGCACGCTCCCAGCCCGAACGCAAAGTGTCCCCGGAGCCCAGCAGCTACCTGCTCCCTGGACGGTGGCTCTAGACTTTTGAGAAGCTCAAAACTTTTAGCGCCAGTCTTGAGCACATGGGAGGGGAAAACCCCAATCCCATCAACCCCTGCGAGGCTCCTGGCACAAAGCTGGACAGTCGCCATGACAAGTAAGGGCAAGTAATCCGCCTGCCGGAGGAAGCAAAGGAAATGGAGTTGGGGAGGAGGGTGCAGAGTCAGGATTCTCGCCGACCTGGTGCCGTAGATACTAACATTTTGGGGTGGAAAATTCTGCAAGCCAGAGCTGTGAGGGCAGAATTGGTGGAAAT	CGACGGTCCTCCTCGGCCTGGCGGGCAAACCCCTGGTTTAGCACTTCTCACTTCCACGACTGACAGCCTTCAATTGGATTTTCTCCATCTAGCGGAGCCGGGGGCTGCCTGGAAAGATCGCTCCAGGAAGGACAAAGGTCCGGAAGTTGTGGGACCTTAGCAGCTTGGGCTCCCCGGATCACCCCCAAATGATCATTTCGGAATGGAGCCCCAGTTTTCACTAGGATGCCATGGGCTCTAAAATATACAGCTATGAGTTCTCAATGTTTCGAGATCCAAAAGTCTCAGACCTCAATGCTTTGTGCATCTTTTATTTCAGGGATTCCCTACGCCCAGCACCGGGTGGATGTGCAAAGAAGTACGCTTTAGGCCGGCTCAAGGTTCCCCAAAGCTCCACTCCTCTGCCTAGGCGTTCAACTTTGAGTTCGGATGGTCCTAACATCCCCATCATCTACACCCAGGTCTCCCAACAATGCAACTCCTATGATGATCCCTCTAGCCAAGCTTCCATCCCACTCACCCCCAAACTCGCTAAGTCCCCACTGCCCCACCCCCAGCCCCAGCGATTTTCCCGAGCTGAAAATACACGGAGCCGAGAGCCCGTGACTCAGAGAGGACTCATCAAGTTCAGTCAGGAGCTTACCCAATCCAGGGAAGCGTGTCACCGTCGTGGAAAGCACGCTCCCAGCCCGAACGCAAAGTGTCCCCGGAGCCCAGCAGCTACCTGCTCCCTGGACGGTGGCTCTAGACTTTTGAGAAGCTCAAAACTTTTAGCGCCAGTCTTGAGCACATGGGAGGGGAAAACCCCAATCCCATCAACCCCTGCGAGGCTCCTGGCACAAAGCTGGACAGTCGCCATGACAAGTAAGGGCAAGTAATCCGCCTGCCGGAGGAAGCAAAGGAAATGGAGTTGGGGAGGAGGGTGCAGAGTCAGGATTCTCGCCGACCTGGTGCCGTAGATACTAACATTTTGGGGTGGAAAATTCTGCAAGCCAGAGCTGTGAGGGCAGAATTGGTGGAAAT	-			P-0080158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	65	439	0				ENST00000269305	NM_001126112.2																																																																																	
RAD54L	8438	MSKCC	GRCh37	1	46740391	46740391	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0080158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	77	357	0	ENST00000371975.4:c.1869+2T>G		p.X623_splice	ENST00000371975	NM_003579.3	623																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11098597	11098603	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACAGGTG	ACAGGTG	-			P-0080158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	74	425	0	ENST00000344626.4:c.1116_1118+4del		p.X372_splice	ENST00000344626	NM_003072.3	372																																																																																
TSC2	7249	MSKCC	GRCh37	16	2113025	2113025	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	53	306	0	ENST00000219476.3:c.1414G>T	p.Val472Leu	p.V472L	ENST00000219476	NM_000548.3	472	Gtg/Ttg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0080160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	219	411	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
TP53	7157	MSKCC	GRCh37	17	7579538	7579539	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0080160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	207	456	0	ENST00000269305.4:c.148dup	p.Ile50AsnfsTer2	p.I50Nfs*2	ENST00000269305	NM_001126112.2	50	att/aAtt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519896		P-0080160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	145	379	0	ENST00000281708.4:c.1514G>A	p.Arg505His	p.R505H	ENST00000281708	NM_033632.3	505	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175240	112175240	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	138	433	0	ENST00000257430.4:c.3949del	p.Glu1317LysfsTer4	p.E1317Kfs*4	ENST00000257430	NM_000038.5	1317	Gaa/aa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226112	53226113	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCCCAGCTGCCG			P-0080160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	48	184	0	ENST00000375401.3:c.2725_2736dup	p.Arg909_Gly912dup	p.R909_G912dup	ENST00000375401	NM_004187.3	909	-/CGGCAGCTGGGG																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72076781	72076781	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	188	434	0	ENST00000357731.5:c.716G>T	p.Arg239Leu	p.R239L	ENST00000357731	NM_173808.2	239	cGc/cTc																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518051	69518051	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	118	347	0	ENST00000294312.3:c.314C>A	p.Ala105Asp	p.A105D	ENST00000294312	NM_005117.2	105	gCc/gAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18644461	18644461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	191	351	0	ENST00000266497.5:c.2639C>A	p.Pro880His	p.P880H	ENST00000266497		880	cCt/cAt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	498251	498251	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	109	200	0	ENST00000399788.2:c.7G>T	p.Gly3Cys	p.G3C	ENST00000399788	NM_001042603.1	3	Ggc/Tgc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73347853	73347853	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1310582067		P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	219	402	0	ENST00000377767.4:c.1208A>T	p.Asp403Val	p.D403V	ENST00000377767	NM_014953.3	403	gAt/gTt																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023098	33023099	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	190	432	0	ENST00000300177.4:c.207_208delinsT	p.Glu71ArgfsTer13	p.E71Rfs*13	ENST00000300177	NM_001191322.1	69	ccCGgg/ccTgg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457653	67457653	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs973219546		P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	486	515	1	ENST00000327367.4:c.463G>A	p.Asp155Asn	p.D155N	ENST00000327367	NM_005902.3	155	Gac/Aac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031965	10031965	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	147	398	0	ENST00000330684.3:c.858C>A	p.Tyr286Ter	p.Y286*	ENST00000330684	NM_001134407.1	286	taC/taA																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7982743	7982743	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs764382022		P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	139	394	0	ENST00000319144.4:c.1042G>C	p.Glu348Gln	p.E348Q	ENST00000319144	NM_001139.2	348	Gag/Cag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790038	40790038	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757402269		P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	127	407	0	ENST00000373198.4:c.2693C>T	p.Thr898Met	p.T898M	ENST00000373198	NM_133170.3	898	aCg/aTg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808569	1808569	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	166	565	0	ENST00000260795.2:c.2182C>G	p.Arg728Gly	p.R728G	ENST00000260795		728	Cgg/Ggg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721235	176721235	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	213	458	0	ENST00000439151.2:c.6866G>T	p.Arg2289Met	p.R2289M	ENST00000439151	NM_022455.4	2289	aGg/aTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	168	446	0	ENST00000304494.5:c.242C>A	p.Pro81His	p.P81H	ENST00000304494	NM_000077.4	81	cCc/cAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484327	8484327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	150	413	0	ENST00000356435.5:c.3205C>A	p.Gln1069Lys	p.Q1069K	ENST00000356435		1069	Cag/Aag																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321386	1321386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	120	345	0	ENST00000381566.1:c.369G>T	p.Lys123Asn	p.K123N	ENST00000381566		123	aaG/aaT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044905	47044907	+	frameshift_variant	Frame_Shift_Del	DEL	GTG	GTG	TT			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	183	275	2	ENST00000329236.7:c.1997_1999delinsTT	p.Arg666LeufsTer58	p.R666Lfs*58	ENST00000329236	NM_001204466.1	666	cGTGgg/cTTgg																																																																															
AR	367	MSKCC	GRCh37	X	66766055	66766055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			61	161	206	0	ENST00000374690.3:c.1067C>T	p.Ala356Val	p.A356V	ENST00000374690	NM_000044.3	356	gCa/gTa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188946	11188946	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	150	409	0	ENST00000361445.4:c.5777G>C	p.Gly1926Ala	p.G1926A	ENST00000361445	NM_004958.3	1926	gGg/gCg																																																																															
SDHC	6391	MSKCC	GRCh37	1	161284216	161284216	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	464	331	0	ENST00000367975.2:c.20+1G>T		p.X7_splice	ENST00000367975	NM_003001.3	7																																																																																
SPEN	23013	MSKCC	GRCh37	1	16242736	16242738	+	missense_variant	Missense_Mutation	ONP	GAC	GAC	AAT			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	210	399	0	ENST00000375759.3:c.1357_1359delinsAAT	p.Asp453Asn	p.D453N	ENST00000375759	NM_015001.2	453	GAC/AAT																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745462	162745466	+	missense_variant	Missense_Mutation	ONP	TAAAG	TAAAG	AAAAT			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	142	401	0	ENST00000367921.3:c.1877_1881delinsAAAAT	p.Ile626_Lys627delinsLysAsn	p.I626_K627delinsKN	ENST00000367921	NM_006182.2	626	aTAAAG/aAAAAT																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120723	115120723	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	133	489	0	ENST00000257566.3:c.283C>G	p.Pro95Ala	p.P95A	ENST00000257566	NM_016569.3	95	Ccc/Gcc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	402044	402044	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	220	425	0	ENST00000399788.2:c.4747A>G	p.Lys1583Glu	p.K1583E	ENST00000399788	NM_001042603.1	1583	Aaa/Gaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435282	49435282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	178	404	0	ENST00000301067.7:c.6271G>A	p.Gly2091Ser	p.G2091S	ENST00000301067	NM_003482.3	2091	Ggc/Agc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67670637	67670637	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	185	353	0	ENST00000264010.4:c.1882C>G	p.Pro628Ala	p.P628A	ENST00000264010	NM_006565.3	628	Cct/Gct																																																																															
RNF43	54894	MSKCC	GRCh37	17	56434877	56434877	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	224	513	0	ENST00000407977.2:c.2260G>T	p.Gly754Cys	p.G754C	ENST00000407977		754	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576800	7577085	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGAGTGTTAGACTGGAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCCTTGGTCTCCTCCACCGCTTCTTGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGGGCAGCTCGTGGTGAGGCTCCCCTTTCTTGCGGAGATTCTCTTCCTC	TGAGTGTTAGACTGGAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCCTTGGTCTCCTCCACCGCTTCTTGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGGGCAGCTCGTGGTGAGGCTCCCCTTTCTTGCGGAGATTCTCTTCCTC	-			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	144	337	0	ENST00000269305.4:c.853_993+53del		p.X285_splice	ENST00000269305	NM_001126112.2	285																																																																																
JAK3	3718	MSKCC	GRCh37	19	17951082	17951082	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	182	352	0	ENST00000458235.1:c.1211G>T	p.Ser404Ile	p.S404I	ENST00000458235	NM_000215.3	404	aGc/aTc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212576857	212576857	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	170	339	0	ENST00000342788.4:c.1042G>T	p.Val348Leu	p.V348L	ENST00000342788	NM_005235.2	348	Gtg/Ttg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212578291	212578291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	357	381	0	ENST00000342788.4:c.966G>T	p.Met322Ile	p.M322I	ENST00000342788	NM_005235.2	322	atG/atT																																																																															
SOS1	6654	MSKCC	GRCh37	2	39283986	39283986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	204	348	0	ENST00000402219.2:c.367G>T	p.Asp123Tyr	p.D123Y	ENST00000402219	NM_005633.3	123	Gac/Tac																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607590	46607590	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	188	473	0	ENST00000263734.3:c.1779G>C	p.Glu593Asp	p.E593D	ENST00000263734	NM_001430.4	593	gaG/gaC																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714476	40714476	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	155	444	0	ENST00000373198.4:c.3921G>T	p.Trp1307Cys	p.W1307C	ENST00000373198	NM_133170.3	1307	tgG/tgT																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21343104	21343104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	173	434	1	ENST00000215739.8:c.536G>A	p.Gly179Glu	p.G179E	ENST00000215739	NM_006767.3	179	gGg/gAg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670419	134670419	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	153	427	0	ENST00000398015.3:c.330C>A	p.Phe110Leu	p.F110L	ENST00000398015	NM_004441.4	110	ttC/ttA																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146599	185146599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	188	418	0	ENST00000265026.3:c.230G>T	p.Arg77Met	p.R77M	ENST00000265026	NM_004721.4	77	aGg/aTg																																																																															
TP63	8626	MSKCC	GRCh37	3	189607257	189607257	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	255	519	0	ENST00000264731.3:c.1636G>C	p.Asp546His	p.D546H	ENST00000264731	NM_003722.4	546	Gat/Cat																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427790	72427790	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	173	408	0	ENST00000477973.2:c.700-2A>T		p.X234_splice	ENST00000477973	NM_012234.5	234																																																																																
TET2	54790	MSKCC	GRCh37	4	106157524	106157524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	212	429	0	ENST00000380013.4:c.2425G>T	p.Val809Leu	p.V809L	ENST00000380013	NM_001127208.2	809	Gta/Tta																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156525	55156525	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	172	411	0	ENST00000257290.5:c.2926G>C	p.Ala976Pro	p.A976P	ENST00000257290	NM_006206.4	976	Gct/Cct																																																																															
KIT	3815	MSKCC	GRCh37	4	55598052	55598052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	206	295	0	ENST00000288135.5:c.2249G>T	p.Arg750Ile	p.R750I	ENST00000288135	NM_000222.2	750	aGa/aTa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057651	180057651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	135	440	0	ENST00000261937.6:c.304C>T	p.His102Tyr	p.H102Y	ENST00000261937	NM_182925.4	102	Cat/Tat																																																																															
TRIP13	9319	MSKCC	GRCh37	5	916068	916068	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	169	374	0	ENST00000166345.3:c.1183G>T	p.Ala395Ser	p.A395S	ENST00000166345	NM_004237.3	395	Gct/Tct																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997784	149997784	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	182	390	0	ENST00000253339.5:c.2683G>T	p.Glu895Ter	p.E895*	ENST00000253339		895	Gag/Tag																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683710	162683710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	160	424	0	ENST00000366898.1:c.259G>T	p.Asp87Tyr	p.D87Y	ENST00000366898	NM_004562.2	87	Gac/Tac																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858191	27858191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	207	442	0	ENST00000359303.2:c.380T>C	p.Leu127Pro	p.L127P	ENST00000359303	NM_003535.2	127	cTt/cCt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323171	31323172	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	220	638	0	ENST00000412585.2:c.817dup	p.Val273GlyfsTer16	p.V273Gfs*16	ENST00000412585	NM_005514.6	273	gtg/gGtg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324513	31324513	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	68	461	0	ENST00000412585.2:c.295del	p.Arg99GlufsTer52	p.R99Efs*52	ENST00000412585	NM_005514.6	99	Cga/ga																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821573	32821573	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	198	357	0	ENST00000354258.4:c.21C>G	p.Ser7Arg	p.S7R	ENST00000354258	NM_000593.5	7	agC/agG																																																																															
AGO2	27161	MSKCC	GRCh37	8	141567223	141567223	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1524	156	463	0	ENST00000220592.5:c.991G>T	p.Gly331Ter	p.G331*	ENST00000220592	NM_012154.3	331	Gga/Tga																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981534	70981534	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	187	446	0	ENST00000276594.2:c.562G>T	p.Glu188Ter	p.E188*	ENST00000276594	NM_024504.3	188	Gaa/Taa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054634	5054635	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	183	441	0	ENST00000381652.3:c.688dup	p.Arg230LysfsTer24	p.R230Kfs*24	ENST00000381652	NM_004972.3	229	ata/atAa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376029	8376029	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	161	362	0	ENST00000356435.5:c.4568G>T	p.Gly1523Val	p.G1523V	ENST00000356435		1523	gGt/gTt																																																																															
RET	5979	MSKCC	GRCh37	10	43609973	43609975	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0080168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	42	631	0	ENST00000355710.3:c.1927_1929del	p.Leu643del	p.L643del	ENST00000355710	NM_020975.4	642	gTCCtc/gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579408	7579460	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTG	CAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTG	-			P-0080168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	232	634	0	ENST00000269305.4:c.227_279del	p.Ala76ValfsTer55	p.A76Vfs*55	ENST00000269305	NM_001126112.2	76	gCACCAGCAGCTCCTACACCGGCGGCCCCTGCACCAGCCCCCTCCTGGCCCCTG/g																																																																															
ERG	2078	MSKCC	GRCh37	21	39755422	39755422	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1460346267		P-0080168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	38	614	0	ENST00000288319.7:c.1343C>T	p.Ala448Val	p.A448V	ENST00000288319	NM_182918.3	448	gCc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0080168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	193	494	1	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914014	32914014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	68	498	0	ENST00000380152.3:c.5522C>T	p.Pro1841Leu	p.P1841L	ENST00000380152		1841	cCa/cTa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680692	88680692	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	40	462	0	ENST00000360948.2:c.565T>A	p.Cys189Ser	p.C189S	ENST00000360948	NM_001012338.2	189	Tgc/Agc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866603	37866604	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTT			P-0080168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	81	614	0	ENST00000269571.5:c.772_774dup	p.Phe258dup	p.F258dup	ENST00000269571		258	cac/caCTTc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2096741	2096741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	65	346	0	ENST00000349721.2:c.2968G>A	p.Asp990Asn	p.D990N	ENST00000349721	NM_003070.3	990	Gat/Aat																																																																															
AKT1	207	MSKCC	GRCh37	14	105243045	105243045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	226	540	0	ENST00000349310.3:c.238T>C	p.Trp80Arg	p.W80R	ENST00000349310	NM_001014432.1	80	Tgg/Cgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578266	7578266	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	135	673	0	ENST00000269305.4:c.583del	p.Ile195SerfsTer52	p.I195Sfs*52	ENST00000269305	NM_001126112.2	195	Atc/tc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943692	9943692	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749504561		P-0080175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	270	549	1	ENST00000330684.3:c.1249G>A	p.Val417Ile	p.V417I	ENST00000330684	NM_001134407.1	417	Gtc/Atc																																																																															
WT1	7490	MSKCC	GRCh37	11	32421541	32421541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	116	524	0	ENST00000332351.3:c.1051G>A	p.Gly351Arg	p.G351R	ENST00000332351	NM_024426.4	351	Gga/Aga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779190	3779190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	29	425	0	ENST00000262367.5:c.5858C>T	p.Pro1953Leu	p.P1953L	ENST00000262367	NM_004380.2	1953	cCt/cTt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67650653	67650653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	267	439	0	ENST00000264010.4:c.958C>A	p.Arg320Ser	p.R320S	ENST00000264010	NM_006565.3	320	Cgt/Agt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519942		P-0080214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	92	260	0	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579346	7579346	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0080214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	158	383	0	ENST00000269305.4:c.341T>A	p.Leu114Ter	p.L114*	ENST00000269305	NM_001126112.2	114	tTg/tAg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9525060	9525060	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	108	289	0	ENST00000353224.5:c.1825T>C	p.Trp609Arg	p.W609R	ENST00000353224	NM_177990.2	609	Tgg/Cgg																																																																															
MET	4233	MSKCC	GRCh37	7	116398622	116398632	+	frameshift_variant	Frame_Shift_Del	DEL	TACCGTGAAGA	TACCGTGAAGA	-			P-0080214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	80	289	0	ENST00000397752.3:c.2213_2223del	p.Tyr738SerfsTer5	p.Y738Sfs*5	ENST00000397752	NM_000245.2	738	TACCGTGAAGAt/t																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720689	89720704	+	frameshift_variant	Frame_Shift_Del	DEL	ACCAGGACCAGAGGAA	ACCAGGACCAGAGGAA	-			P-0080214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	33	115	0	ENST00000371953.3:c.843_858del	p.Gly282GlnfsTer4	p.G282Qfs*4	ENST00000371953	NM_000314.4	280	atACCAGGACCAGAGGAA/at																																																																															
BRCA1	672	MSKCC	GRCh37	17	41215377	41215396	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGACTGGGTCACCCCTAAAG	AGACTGGGTCACCCCTAAAG	-			P-0080214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	41	197	0	ENST00000357654.3:c.5153-6_5166del		p.X1718_splice	ENST00000357654	NM_007294.3	1718																																																																																
TP53	7157	MSKCC	GRCh37	17	7579349	7579349	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0080238-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	228	397	0	ENST00000269305.4:c.338T>G	p.Phe113Cys	p.F113C	ENST00000269305	NM_001126112.2	113	tTc/tGc																																																																															
NPM1	4869	MSKCC	GRCh37	5	170827901	170827901	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0080238-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	63	233	0	ENST00000296930.5:c.641C>G	p.Ser214Ter	p.S214*	ENST00000296930	NM_002520.6	214	tCa/tGa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs879255270		P-0079192-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			420	22	561	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																															
KLF5	688	MSKCC	GRCh37	13	73649905	73649905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079192-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			327	31	417	0	ENST00000377687.4:c.1255G>C	p.Glu419Gln	p.E419Q	ENST00000377687	NM_001730.3	419	Gag/Cag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0079192-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	50	571	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2101570	2101570	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0079192-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			229	13	238	0	ENST00000349721.2:c.3079G>C	p.Glu1027Gln	p.E1027Q	ENST00000349721	NM_003070.3	1027	Gaa/Caa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0080132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	65	107	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0080132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	22	206	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0080132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	85	190	0	ENST00000269305.4:c.673-2A>C		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	64	142	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110251320	110251320	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	44	181	0	ENST00000374672.4:c.17G>C	p.Gly6Ala	p.G6A	ENST00000374672	NM_004235.4	6	gGc/gCc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28959095	28959095	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	38	226	0	ENST00000282397.4:c.2043C>G	p.Asp681Glu	p.D681E	ENST00000282397	NM_002019.4	681	gaC/gaG																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8331728	8331728	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	127	138	0	ENST00000356435.5:c.5388G>T	p.Gln1796His	p.Q1796H	ENST00000356435		1796	caG/caT																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0080134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	161	412	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520008		P-0080134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	160	499	0	ENST00000269305.4:c.613T>G	p.Tyr205Asp	p.Y205D	ENST00000269305	NM_001126112.2	205	Tat/Gat																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920446	114920446	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	97	324	0	ENST00000543371.1:c.1387T>C	p.Cys463Arg	p.C463R	ENST00000543371	NM_001198531.1	463	Tgc/Cgc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247303	153247303	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	55	444	0	ENST00000281708.4:c.1499A>G	p.His500Arg	p.H500R	ENST00000281708	NM_033632.3	500	cAt/cGt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143067144	143067144	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	40	361	0	ENST00000262992.4:c.1569G>C	p.Arg523Ser	p.R523S	ENST00000262992	NM_001101669.1	523	agG/agC																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2161692	2161692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	152	289	0	ENST00000349721.2:c.3988G>A	p.Glu1330Lys	p.E1330K	ENST00000349721	NM_003070.3	1330	Gaa/Aaa																																																																															
LYN	4067	MSKCC	GRCh37	8	56912033	56912033	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	101	329	0	ENST00000519728.1:c.1261A>T	p.Thr421Ser	p.T421S	ENST00000519728	NM_002350.3	421	Act/Tct																																																																															
CIC	23152	MSKCC	GRCh37	19	42794743	42794743	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	58	453	0	ENST00000575354.2:c.1823G>T	p.Gly608Val	p.G608V	ENST00000575354	NM_015125.3	608	gGc/gTc																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675212	40675214	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0080134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	66	449	0	ENST00000249776.8:c.178_180del	p.Lys60del	p.K60del	ENST00000249776	NM_033286.3	59	gAGAag/gag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43714168	43714171	+	frameshift_variant	Frame_Shift_Ins	INS	TAGC	TAGC	AAGGG			P-0080134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	141	456	0	ENST00000382044.4:c.3982_3985delinsCCCTT	p.Ala1328ProfsTer42	p.A1328Pfs*42	ENST00000382044	NM_001141980.1	1328	GCTAtg/CCCTTtg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026204	48026204	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs63750440		P-0080219-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	41	398	0	ENST00000234420.5:c.1082G>A	p.Arg361His	p.R361H	ENST00000234420	NM_000179.2	361	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0080219-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	33	226	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0080220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	147	447	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175772	112175772	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	170	402	0	ENST00000257430.4:c.4483del	p.Ser1495ValfsTer12	p.S1495Vfs*12	ENST00000257430	NM_000038.5	1494	gAa/ga																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130450	29130464	+	inframe_deletion	In_Frame_Del	DEL	TCCTCAGGTTCTTGG	TCCTCAGGTTCTTGG	-	rs587780181		P-0080220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	43	449	0	ENST00000328354.6:c.246_260del	p.Asp82_Glu86del	p.D82_E86del	ENST00000328354	NM_007194.3	82	gaCCAAGAACCTGAGGAg/gag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11189008	11189008	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0080220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	127	281	0	ENST00000361445.4:c.5715A>T	p.Arg1905Ser	p.R1905S	ENST00000361445	NM_004958.3	1905	agA/agT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	114	241	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591113	67591121	+	inframe_deletion	In_Frame_Del	DEL	ACCTTATCC	ACCTTATCC	-			P-0080220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	106	359	0	ENST00000274335.5:c.1707_1715del	p.Asp569_Gln572delinsGlu	p.D569_Q572delinsE	ENST00000274335		569	gACCTTATCCag/gag																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503596	47503598	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0080220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	99	296	0	ENST00000404338.3:c.4158_4160del	p.Asn1386del	p.N1386del	ENST00000404338	NM_004491.4	1384	cACAac/cac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912189	114912189	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	131	228	0	ENST00000543371.1:c.1259G>C	p.Arg420Pro	p.R420P	ENST00000543371	NM_001198531.1	420	cGg/cCg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37863341	37863341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	29	327	0	ENST00000269571.5:c.172G>A	p.Gly58Arg	p.G58R	ENST00000269571		58	Gga/Aga																																																																															
STK11	6794	MSKCC	GRCh37	19	1207204	1207204	+	splice_donor_variant	Splice_Site	DEL	T	T	-			P-0080233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	17	251	0	ENST00000326873.7:c.290+2del		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																																
GLI1	2735	MSKCC	GRCh37	12	57861826	57861826	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	26	322	0	ENST00000228682.2:c.1127C>A	p.Pro376His	p.P376H	ENST00000228682	NM_005269.2	376	cCt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0080233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	19	230	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943618	17943618	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	19	363	0	ENST00000458235.1:c.2471A>G	p.Tyr824Cys	p.Y824C	ENST00000458235	NM_000215.3	824	tAc/tGc																																																																															
AR	367	MSKCC	GRCh37	X	66765567	66765573	+	frameshift_variant	Frame_Shift_Del	DEL	CCTTCAG	CCTTCAG	-			P-0080233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	31	195	0	ENST00000374690.3:c.580_586del	p.Leu194AsnfsTer31	p.L194Nfs*31	ENST00000374690	NM_000044.3	193	ctCCTTCAG/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	63	310	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	44	340	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262680	16262680	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	23	308	2	ENST00000375759.3:c.9950del	p.Pro3317ArgfsTer83	p.P3317Rfs*83	ENST00000375759	NM_015001.2	3315	caC/ca																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	39	281	1	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589169	67589169	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766524768		P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	13	234	0	ENST00000274335.5:c.1157G>A	p.Arg386Gln	p.R386Q	ENST00000274335		386	cGa/cAa																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518550	69518550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	18	170	0	ENST00000294312.3:c.95C>T	p.Pro32Leu	p.P32L	ENST00000294312	NM_005117.2	32	cCc/cTc																																																																															
PHF6	84295	MSKCC	GRCh37	X	133511713	133511716	+	frameshift_variant	Frame_Shift_Del	DEL	AAAT	AAAT	-			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			52	14	110	0	ENST00000332070.3:c.67_70del	p.Asn23GlufsTer9	p.N23Efs*9	ENST00000332070	NM_032458.2	22	tcAAAT/tc																																																																															
TEK	7010	MSKCC	GRCh37	9	27169624	27169624	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762239847		P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	12	281	0	ENST00000380036.4:c.625C>T	p.Arg209Trp	p.R209W	ENST00000380036	NM_000459.3	209	Cgg/Tgg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522596	176522596	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754440305		P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	25	332	0	ENST00000292408.4:c.1693C>T	p.Arg565Trp	p.R565W	ENST00000292408	NM_213647.1	565	Cgg/Tgg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346752	89346754	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	48	295	1	ENST00000301030.4:c.6196_6198del	p.Phe2066del	p.F2066del	ENST00000301030	NM_001256183.1	2066	TTC/-																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3824616	3824616	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	59	278	0	ENST00000262367.5:c.2237C>A	p.Pro746Gln	p.P746Q	ENST00000262367	NM_004380.2	746	cCa/cAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32893378	32893378	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	23	309	0	ENST00000380152.3:c.232C>G	p.Pro78Ala	p.P78A	ENST00000380152		78	Cca/Gca																																																																															
NF1	4763	MSKCC	GRCh37	17	29528441	29528441	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	15	235	0	ENST00000358273.4:c.1198C>T	p.Gln400Ter	p.Q400*	ENST00000358273	NM_001042492.2	400	Cag/Tag																																																																															
MLH1	4292	MSKCC	GRCh37	3	37055971	37055971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	30	179	0	ENST00000231790.2:c.726G>A	p.Met242Ile	p.M242I	ENST00000231790	NM_000249.3	242	atG/atA																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16040660	16040660	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	19	222	0	ENST00000268712.3:c.1474A>G	p.Arg492Gly	p.R492G	ENST00000268712	NM_006311.3	492	Aga/Gga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268078	55268078	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756554871		P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	25	379	0	ENST00000275493.2:c.2918G>A	p.Arg973Gln	p.R973Q	ENST00000275493	NM_005228.3	973	cGa/cAa																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266879	18266879	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	51	200	0	ENST00000222254.8:c.190A>T	p.Thr64Ser	p.T64S	ENST00000222254	NM_005027.3	64	Aca/Tca																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066461	94066461	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	23	314	0	ENST00000369303.4:c.1298C>G	p.Ala433Gly	p.A433G	ENST00000369303	NM_004440.3	433	gCt/gGt																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66779598	66779598	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	25	219	0	ENST00000307102.5:c.928A>T	p.Ile310Phe	p.I310F	ENST00000307102	NM_002755.3	310	Att/Ttt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11272421	11272421	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	39	263	0	ENST00000361445.4:c.3509G>T	p.Arg1170Leu	p.R1170L	ENST00000361445	NM_004958.3	1170	cGc/cTc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933732	36933732	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	63	285	0	ENST00000361632.4:c.1667A>T	p.Lys556Met	p.K556M	ENST00000361632		556	aAg/aTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55972101	55972101	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	15	244	0	ENST00000263923.4:c.1543A>C	p.Ser515Arg	p.S515R	ENST00000263923	NM_002253.2	515	Agt/Cgt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55152060	55152060	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	34	267	0	ENST00000257290.5:c.2492T>A	p.Ile831Asn	p.I831N	ENST00000257290	NM_006206.4	831	aTt/aAt																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202320	138202320	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	40	264	0	ENST00000237289.4:c.2237G>C	p.Gly746Ala	p.G746A	ENST00000237289	NM_001270507.1	746	gGg/gCg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664813	138664813	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	19	116	0	ENST00000330315.3:c.752C>A	p.Pro251Gln	p.P251Q	ENST00000330315	NM_023067.3	251	cCg/cAg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645136	86645136	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			75	12	298	0	ENST00000274376.6:c.1208C>A	p.Pro403Gln	p.P403Q	ENST00000274376	NM_002890.2	403	cCa/cAa																																																																															
HRAS	3265	MSKCC	GRCh37	11	533491	533491	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397517142		P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	30	316	0	ENST00000311189.7:c.412G>A	p.Gly138Ser	p.G138S	ENST00000311189		138	Ggc/Agc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518280	8518280	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	19	231	0	ENST00000356435.5:c.1111G>T	p.Asp371Tyr	p.D371Y	ENST00000356435		371	Gat/Tat																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748587	40748587	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	15	196	0	ENST00000373198.4:c.2929A>T	p.Ile977Phe	p.I977F	ENST00000373198	NM_133170.3	977	Att/Ttt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099211	157099213	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	25	248	0	ENST00000346085.5:c.153_155del	p.Ser53del	p.S53del	ENST00000346085	NM_020732.3	50	TCC/-																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513337	44513337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	19	234	0	ENST00000291552.4:c.598del	p.Arg200GlyfsTer57	p.R200Gfs*57	ENST00000291552	NM_006758.2	200	Cgg/gg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672857	30672857	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	57	448	0	ENST00000376406.3:c.4103C>A	p.Pro1368His	p.P1368H	ENST00000376406	NM_014641.2	1368	cCt/cAt																																																																															
IRF4	3662	MSKCC	GRCh37	6	393350	393350	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	13	172	0	ENST00000380956.4:c.198G>T	p.Glu66Asp	p.E66D	ENST00000380956	NM_001195286.1	66	gaG/gaT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790083	40790083	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	21	342	0	ENST00000373198.4:c.2648A>C	p.Gln883Pro	p.Q883P	ENST00000373198	NM_133170.3	883	cAg/cCg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484787	57484787	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	50	286	0	ENST00000371085.3:c.767T>C	p.Val256Ala	p.V256A	ENST00000371085	NM_000516.4	256	gTc/gCc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488770	212488770	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	25	335	0	ENST00000342788.4:c.2080-1G>T		p.X694_splice	ENST00000342788	NM_005235.2	694																																																																																
POLD1	5424	MSKCC	GRCh37	19	50912441	50912441	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	45	218	0	ENST00000440232.2:c.1955G>T	p.Arg652Leu	p.R652L	ENST00000440232	NM_002691.3	652	cGg/cTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7126594	7126595	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	37	242	0	ENST00000302850.5:c.3013_3013+1delinsTT		p.X1005_splice	ENST00000302850	NM_000208.2	1005																																																																																
ARHGAP35	2909	MSKCC	GRCh37	19	47424576	47424576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	33	313	0	ENST00000404338.3:c.2644C>A	p.Pro882Thr	p.P882T	ENST00000404338	NM_004491.4	882	Cct/Act																																																																															
BRCA1	672	MSKCC	GRCh37	17	41197733	41197733	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	20	351	0	ENST00000357654.3:c.5554A>G	p.Thr1852Ala	p.T1852A	ENST00000357654	NM_007294.3	1852	Acc/Gcc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120491677	120491677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	42	267	0	ENST00000256646.2:c.2552C>T	p.Ser851Leu	p.S851L	ENST00000256646	NM_024408.3	851	tCa/tTa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426797	212426797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	25	240	0	ENST00000342788.4:c.2318C>T	p.Ala773Val	p.A773V	ENST00000342788	NM_005235.2	773	gCa/gTa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0080241-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	377	365	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071570-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			289	41	328	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151932982	151932982	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs772146328		P-0071570-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			92	28	74	0	ENST00000262189.6:c.2689C>T	p.Arg897Ter	p.R897*	ENST00000262189	NM_170606.2	897	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492856	56492859	+	frameshift_variant	Frame_Shift_Del	DEL	GTGC	GTGC	-			P-0071570-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			471	256	513	0	ENST00000407977.2:c.80_83del	p.Arg27GlnfsTer23	p.R27Qfs*23	ENST00000407977		27	cGCACa/ca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685274	89685275	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	G			P-0078852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	106	278	1	ENST00000371953.3:c.169_170delinsG	p.Leu57GlyfsTer42	p.L57Gfs*42	ENST00000371953	NM_000314.4	57	TTg/Gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0078852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	180	505	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RB1	5925	MSKCC	GRCh37	13	49050916	49050917	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0078852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	176	435	0	ENST00000267163.4:c.2600_2601insT	p.Pro869SerfsTer2	p.P869Sfs*2	ENST00000267163	NM_000321.2	867	aac/aaTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs786203436		P-0080108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	136	638	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0080110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	207	435	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0080110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	119	425	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028656	12028656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	97	316	0	ENST00000353533.5:c.859C>T	p.Arg287Cys	p.R287C	ENST00000353533	NM_003010.3	287	Cgc/Tgc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30128261	30128261	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1329197803		P-0080110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	67	486	0	ENST00000263025.4:c.971C>T	p.Ala324Val	p.A324V	ENST00000263025	NM_002746.2	324	gCg/gTg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671743	67671743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	191	470	1	ENST00000264010.4:c.2152C>T	p.Pro718Ser	p.P718S	ENST00000264010	NM_006565.3	718	Ccc/Tcc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411237	63411237	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0080110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	162	234	1	ENST00000330258.3:c.1930C>T	p.Gln644Ter	p.Q644*	ENST00000330258	NM_152424.3	644	Cag/Tag																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643227	38643227	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	57	370	0	ENST00000299084.4:c.697T>C	p.Ser233Pro	p.S233P	ENST00000299084	NM_152594.2	233	Tca/Cca																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115276653	115276653	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	61	405	0	ENST00000438362.2:c.806T>C	p.Leu269Ser	p.L269S	ENST00000438362	NM_001242891.1	269	tTa/tCa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711891	89711891	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs876660507		P-0080141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	55	340	0	ENST00000371953.3:c.509G>T	p.Ser170Ile	p.S170I	ENST00000371953	NM_000314.4	170	aGt/aTt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944728	71944728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	54	519	0	ENST00000298229.2:c.2152C>T	p.His718Tyr	p.H718Y	ENST00000298229	NM_001567.3	718	Cat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0080142-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	384	538	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713469	40713469	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs528913627		P-0080142-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			975	142	498	0	ENST00000373198.4:c.4046G>A	p.Arg1349His	p.R1349H	ENST00000373198	NM_133170.3	1349	cGt/cAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264066389		P-0080142-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	139	463	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4110557	4110557	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121434499		P-0080142-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	490	605	0	ENST00000262948.5:c.400T>C	p.Tyr134His	p.Y134H	ENST00000262948	NM_030662.3	134	Tac/Cac																																																																															
APC	324	MSKCC	GRCh37	5	112175770	112175771	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0080142-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	323	500	0	ENST00000257430.4:c.4479_4480delinsA	p.Glu1494LysfsTer13	p.E1494Kfs*13	ENST00000257430	NM_000038.5	1493	acGGaa/acAaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604756	48604760	+	frameshift_variant	Frame_Shift_Del	DEL	AATTC	AATTC	-			P-0080142-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	44	513	0	ENST00000342988.3:c.1579_1583del	p.Ile527LeufsTer48	p.I527Lfs*48	ENST00000342988	NM_005359.5	526	gaAATTCac/gaac																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0080145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	158	416	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0080145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	149	243	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856127	111856127	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1256080768		P-0080145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	121	407	0	ENST00000341259.2:c.178G>A	p.Ala60Thr	p.A60T	ENST00000341259	NM_005475.2	60	Gcc/Acc																																																																															
AR	367	MSKCC	GRCh37	X	66941695	66941695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768366293		P-0080145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	272	201	0	ENST00000374690.3:c.2339G>A	p.Arg780Gln	p.R780Q	ENST00000374690	NM_000044.3	780	cGg/cAg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445280	29445280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	35	473	0	ENST00000544604.2:c.1111C>T	p.Arg371Cys	p.R371C	ENST00000544604	NM_001206998.1	371	Cgc/Tgc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	338235	338235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	48	480	1	ENST00000262320.3:c.2476A>G	p.Lys826Glu	p.K826E	ENST00000262320	NM_003502.3	826	Aaa/Gaa																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33680881	33680881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	13	69	0	ENST00000308377.4:c.1396C>A	p.Gln466Lys	p.Q466K	ENST00000308377	NM_152270.3	466	Cag/Aag																																																																															
MSI2	124540	MSKCC	GRCh37	17	55674273	55674273	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	59	392	0	ENST00000284073.2:c.499G>T	p.Val167Phe	p.V167F	ENST00000284073	NM_138962.2	167	Gtc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0080146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	64	449	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0080146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	67	522	0	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175217	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0080146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	92	420	0	ENST00000257430.4:c.3929dup	p.Ile1311AspfsTer4	p.I1311Dfs*4	ENST00000257430	NM_000038.5	1309	gaa/gAaa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	137	373	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115871	8115872	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0080147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	181	467	0	ENST00000346208.3:c.1219_1220del	p.Ser407AlafsTer99	p.S407Afs*99	ENST00000346208		406	aTC/a																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0080147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	20	190	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521496	187521496	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777379412		P-0080147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	91	309	0	ENST00000441802.2:c.11659C>T	p.Gln3887Ter	p.Q3887*	ENST00000441802	NM_005245.3	3887	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882005		P-0076715-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			172	109	332	0	ENST00000269305.4:c.713G>C	p.Cys238Ser	p.C238S	ENST00000269305	NM_001126112.2	238	tGt/tCt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0078411-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			523	33	300	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078411-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			742	46	467	0	ENST00000269305.4:c.880del	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	294	Gag/ag																																																																															
RB1	5925	MSKCC	GRCh37	13	49039156	49039157	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGAAGAGGAGTATGATTCTATTATAGTATTCTATAACTCGGTCTTCATGCAG			P-0078411-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			530	13	0	0	ENST00000267163.4:c.2238_2289dup	p.Leu764ArgfsTer4	p.L764Rfs*4	ENST00000267163	NM_000321.2	745	aaa/aaAGAAGAGGAGTATGATTCTATTATAGTATTCTATAACTCGGTCTTCATGCAGa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0079015-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			151	197	310	1				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578546	7578547	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0079015-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			183	74	473	0	ENST00000269305.4:c.383dup	p.Ala129CysfsTer20	p.A129Cfs*20	ENST00000269305	NM_001126112.2	128	cct/ccCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0079015-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			97	158	264	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911842	32911856	+	inframe_deletion	In_Frame_Del	DEL	TATTAGAAGAATCAG	TATTAGAAGAATCAG	-			P-0079015-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			239	65	398	0	ENST00000380152.3:c.3350_3364del	p.Ile1117_Gly1122delinsArg	p.I1117_G1122delinsR	ENST00000380152		1117	aTATTAGAAGAATCAGga/aga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971133	21971215	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGA	GGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGA	-			P-0079015-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			174	91	480	0	ENST00000304494.5:c.151-8_225del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971083	21971083	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0079015-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			118	117	427	0	ENST00000304494.5:c.275A>C	p.Asp92Ala	p.D92A	ENST00000304494	NM_000077.4	92	gAc/gCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0079677-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			164	30	209	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0079677-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			666	104	373	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0079677-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			292	111	223	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0080013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	21	460	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
TERT	7015	MSKCC	GRCh37	5	1264586	1264586	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs547377569		P-0080013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	28	430	0	ENST00000310581.5:c.2776G>A	p.Gly926Ser	p.G926S	ENST00000310581	NM_198253.2	926	Ggc/Agc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs193920894		P-0080013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	170	422	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061313	38061313	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1204900727		P-0080013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	80	457	0	ENST00000250448.2:c.676G>A	p.Asp226Asn	p.D226N	ENST00000250448	NM_004496.3	226	Gac/Aac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44928846	44928846	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			64	182	136	0	ENST00000377967.4:c.1946C>A	p.Ser649Ter	p.S649*	ENST00000377967	NM_021140.2	649	tCa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112174789	112174796	+	stop_gained	Nonsense_Mutation	DEL	TAATGAAG	TAATGAAG	AT			P-0080013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	163	429	0	ENST00000257430.4:c.3498_3505delinsAT	p.Tyr1166_Glu1169delinsTer	p.Y1166_E1169delins*	ENST00000257430	NM_000038.5	1166	taTAATGAAGag/taATag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0080015-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	29	250	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28929495		P-0080022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	305	405	0	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115916	8115916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771315353		P-0080022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	114	571	0	ENST00000346208.3:c.1262C>T	p.Pro421Leu	p.P421L	ENST00000346208		421	cCg/cTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0080022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	365	499	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870888	12870888	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0080022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	119	496	0	ENST00000228872.4:c.115G>T	p.Glu39Ter	p.E39*	ENST00000228872	NM_004064.3	39	Gaa/Taa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740522	58740522	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	166	505	0	ENST00000305921.3:c.1430del	p.Asn477IlefsTer6	p.N477Ifs*6	ENST00000305921	NM_003620.3	476	gAa/ga																																																																															
PRDM1	639	MSKCC	GRCh37	6	106554844	106554844	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	106	436	0	ENST00000369096.4:c.1961C>G	p.Ser654Cys	p.S654C	ENST00000369096	NM_001198.3	654	tCt/tGt																																																																															
KDR	3791	MSKCC	GRCh37	4	55968591	55968591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	107	404	0	ENST00000263923.4:c.2072C>T	p.Ser691Phe	p.S691F	ENST00000263923	NM_002253.2	691	tCt/tTt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435350	18435350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	94	481	0	ENST00000266497.5:c.335C>T	p.Ser112Phe	p.S112F	ENST00000266497		112	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0080023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			72	87	568	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1219378	1219378	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			66	56	448	0	ENST00000326873.7:c.431del	p.Pro144ArgfsTer17	p.P144Rfs*17	ENST00000326873	NM_000455.4	144	Ccg/cg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356193	66356193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	118	495	0	ENST00000273854.3:c.1304C>A	p.Thr435Lys	p.T435K	ENST00000273854	NM_004439.5	435	aCa/aAa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965968	25965968	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754260178		P-0080023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	70	507	0	ENST00000435504.4:c.3238C>T	p.Leu1080Phe	p.L1080F	ENST00000435504		1080	Ctc/Ttc																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47601137	47601146	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAACAGAC	AAGAACAGAC	-			P-0080023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	69	455	0	ENST00000263735.4:c.378_387del	p.Asp128LeufsTer3	p.D128Lfs*3	ENST00000263735	NM_002354.2	125	agAAGAACAGAC/ag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306716	41306716	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	90	489	0	ENST00000373198.4:c.943A>G	p.Ile315Val	p.I315V	ENST00000373198	NM_133170.3	315	Atc/Gtc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965951	25965951	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	71	492	0	ENST00000435504.4:c.3255del	p.Ser1086HisfsTer41	p.S1086Hfs*41	ENST00000435504		1085	ccC/cc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513297	44513299	+	missense_variant	Missense_Mutation	ONP	CCG	CCG	ATC			P-0080023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	30	480	0	ENST00000291552.4:c.636_638delinsGAT	p.Gly213Ile	p.G213I	ENST00000291552	NM_006758.2	212	ggCGGt/ggGATt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105643	27105643	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0080023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	148	551	0	ENST00000324856.7:c.5254A>T	p.Lys1752Ter	p.K1752*	ENST00000324856	NM_006015.4	1752	Aag/Tag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88726679	88726679	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	35	383	0	ENST00000360948.2:c.365C>G	p.Ala122Gly	p.A122G	ENST00000360948	NM_001012338.2	122	gCc/gGc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564726	86564726	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	103	581	0	ENST00000274376.6:c.458T>C	p.Val153Ala	p.V153A	ENST00000274376	NM_002890.2	153	gTg/gCg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117840	70117840	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	61	505	0	ENST00000245479.2:c.308C>A	p.Pro103Gln	p.P103Q	ENST00000245479	NM_000346.3	103	cCg/cAg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162722894	162722894	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	36	396	0	ENST00000367921.3:c.92G>C	p.Arg31Pro	p.R31P	ENST00000367921	NM_006182.2	31	cGc/cCc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470940	25470940	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	31	525	0	ENST00000264709.3:c.821C>G	p.Ala274Gly	p.A274G	ENST00000264709	NM_175629.2	274	gCc/gGc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610492	10610492	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	65	463	0	ENST00000171111.5:c.218G>T	p.Ser73Ile	p.S73I	ENST00000171111	NM_203500.1	73	aGc/aTc																																																																															
MGA	23269	MSKCC	GRCh37	15	42005633	42005633	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0080023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	17	543	0	ENST00000219905.7:c.3369A>C	p.Glu1123Asp	p.E1123D	ENST00000219905	NM_001164273.1	1123	gaA/gaC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0080028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	215	351	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
BLM	641	MSKCC	GRCh37	15	91341505	91341505	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	116	279	0	ENST00000355112.3:c.3296A>T	p.Asn1099Ile	p.N1099I	ENST00000355112	NM_000057.2	1099	aAt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0080028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	154	389	0	ENST00000269305.4:c.614del	p.Tyr205PhefsTer42	p.Y205Ffs*42	ENST00000269305	NM_001126112.2	205	tAt/tt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93969165	93969165	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	88	469	0	ENST00000369303.4:c.1831C>A	p.Pro611Thr	p.P611T	ENST00000369303	NM_004440.3	611	Cct/Act																																																																															
STK11	6794	MSKCC	GRCh37	19	1219402	1219402	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	159	433	0	ENST00000326873.7:c.454C>T	p.Gln152Ter	p.Q152*	ENST00000326873	NM_000455.4	152	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0080072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	82	338	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
POT1	25913	MSKCC	GRCh37	7	124503533	124503533	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1419371633		P-0080072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	115	479	0	ENST00000357628.3:c.417G>C	p.Trp139Cys	p.W139C	ENST00000357628	NM_015450.2	139	tgG/tgC																																																																															
YAP1	10413	MSKCC	GRCh37	11	102033213	102033213	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			732	136	496	0	ENST00000282441.5:c.599A>T	p.Gln200Leu	p.Q200L	ENST00000282441	NM_001130145.2	200	cAg/cTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81388056	81388056	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	47	382	0	ENST00000222390.5:c.319G>T	p.Gly107Ter	p.G107*	ENST00000222390	NM_000601.4	107	Gga/Tga																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30128521	30128521	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			845	140	563	0	ENST00000263025.4:c.861G>C	p.Lys287Asn	p.K287N	ENST00000263025	NM_002746.2	287	aaG/aaC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913744	32913744	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	30	496	0	ENST00000380152.3:c.5252A>T	p.Tyr1751Phe	p.Y1751F	ENST00000380152		1751	tAc/tTc																																																																															
POT1	25913	MSKCC	GRCh37	7	124511021	124511021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	71	448	0	ENST00000357628.3:c.199G>T	p.Glu67Ter	p.E67*	ENST00000357628	NM_015450.2	67	Gaa/Taa																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665483	138665483	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	79	447	0	ENST00000330315.3:c.82G>T	p.Glu28Ter	p.E28*	ENST00000330315	NM_023067.3	28	Gaa/Taa																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001410	29001410	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	81	497	0	ENST00000282397.4:c.1322C>A	p.Pro441Gln	p.P441Q	ENST00000282397	NM_002019.4	441	cCg/cAg																																																																															
ALB	213	MSKCC	GRCh37	4	74274457	74274458	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0080072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	86	522	0	ENST00000295897.4:c.417_418delinsTT	p.Leu139_Val140delinsPheLeu	p.L139_V140delinsFL	ENST00000295897	NM_000477.5	139	ttGGtg/ttTTtg																																																																															
PHF6	84295	MSKCC	GRCh37	X	133549106	133549106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	15	396	0	ENST00000332070.3:c.790G>T	p.Asp264Tyr	p.D264Y	ENST00000332070	NM_032458.2	264	Gat/Tat																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199854	138199854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			817	115	645	0	ENST00000237289.4:c.1272G>T	p.Lys424Asn	p.K424N	ENST00000237289	NM_001270507.1	424	aaG/aaT																																																																															
POLE	5426	MSKCC	GRCh37	12	133236004	133236004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			735	100	601	0	ENST00000320574.5:c.3152C>T	p.Ser1051Phe	p.S1051F	ENST00000320574	NM_006231.2	1051	tCt/tTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821619	72821619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	67	516	0	ENST00000268489.5:c.10556G>T	p.Gly3519Val	p.G3519V	ENST00000268489	NM_006885.3	3519	gGt/gTt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31409244	31409244	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	86	584	0	ENST00000344624.3:c.3773G>C	p.Trp1258Ser	p.W1258S	ENST00000344624		1258	tGg/tCg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9770623	9770623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			802	95	515	0	ENST00000377346.4:c.110C>T	p.Ser37Phe	p.S37F	ENST00000377346	NM_005026.3	37	tCc/tTc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0080075-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	51	482	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0080075-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	78	642	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779647	3779647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080075-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			776	51	585	0	ENST00000262367.5:c.5401G>A	p.Val1801Met	p.V1801M	ENST00000262367	NM_004380.2	1801	Gtg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0080115-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	407	326	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31019211	31019211	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0080115-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	199	362	0	ENST00000375687.4:c.806A>G	p.Asn269Ser	p.N269S	ENST00000375687	NM_015338.5	269	aAc/aGc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89877429	89877429	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759763556		P-0080115-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			317	225	350	0	ENST00000389301.3:c.334C>T	p.Leu112Phe	p.L112F	ENST00000389301	NM_000135.2	112	Ctc/Ttc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55220349	55220349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080115-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			354	128	268	0	ENST00000275493.2:c.739G>T	p.Asp247Tyr	p.D247Y	ENST00000275493	NM_005228.3	247	Gac/Tac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034427	47034427	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080115-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			18	358	147	0	ENST00000329236.7:c.284del	p.Gly95AlafsTer94	p.G95Afs*94	ENST00000329236	NM_001204466.1	94	cGg/cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	241	233	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MET	4233	MSKCC	GRCh37	7	116339954	116339954	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	153	335	0	ENST00000397752.3:c.816G>C	p.Gln272His	p.Q272H	ENST00000397752	NM_000245.2	272	caG/caC																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041724	29041724	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	95	218	0	ENST00000282397.4:c.95C>G	p.Pro32Arg	p.P32R	ENST00000282397	NM_002019.4	32	cCt/cGt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38966804	38966804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	191	219	0	ENST00000357387.3:c.1238C>T	p.Thr413Ile	p.T413I	ENST00000357387	NM_152756.3	413	aCa/aTa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0080118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	109	360	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0080118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	407	437	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	127	220	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206667272	206667272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	122	361	0	ENST00000367120.3:c.2065G>T	p.Gly689Trp	p.G689W	ENST00000367120	NM_014002.3	689	Ggg/Tgg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164898	47164898	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	93	292	1	ENST00000409792.3:c.1228G>C	p.Glu410Gln	p.E410Q	ENST00000409792	NM_014159.6	410	Gag/Cag																																																																															
AR	367	MSKCC	GRCh37	X	66765641	66765641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	194	433	0	ENST00000374690.3:c.653C>A	p.Pro218His	p.P218H	ENST00000374690	NM_000044.3	218	cCc/cAc																																																																															
FYN	2534	MSKCC	GRCh37	6	112020730	112020730	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	103	295	0	ENST00000368678.4:c.841G>T	p.Glu281Ter	p.E281*	ENST00000368678		281	Gaa/Taa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498425	89498426	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0080118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	52	363	0	ENST00000336596.2:c.2399dup	p.Phe801ValfsTer35	p.F801Vfs*35	ENST00000336596	NM_005233.5	799	-/A																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109972	115109972	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	159	379	0	ENST00000257566.3:c.1906C>A	p.Pro636Thr	p.P636T	ENST00000257566	NM_016569.3	636	Ccg/Acg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50816281	50816281	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	149	293	0	ENST00000398568.2:c.1721C>G	p.Pro574Arg	p.P574R	ENST00000398568	NM_001042412.1	574	cCa/cGa																																																																															
MED12	9968	MSKCC	GRCh37	X	70352803	70352803	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	144	347	0	ENST00000374080.3:c.4524C>G	p.His1508Gln	p.H1508Q	ENST00000374080		1508	caC/caG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0080120-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	465	413	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
ARID2	196528	MSKCC	GRCh37	12	46287417	46287417	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080120-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	336	294	0	ENST00000334344.6:c.5280del	p.Glu1761ArgfsTer4	p.E1761Rfs*4	ENST00000334344	NM_152641.2	1759	gAa/ga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878443	151878443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080120-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			796	166	386	0	ENST00000262189.6:c.6502C>T	p.Pro2168Ser	p.P2168S	ENST00000262189	NM_170606.2	2168	Cct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1206165503		P-0080199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	125	344	0	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0080199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	64	220	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144086	55144086	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	49	238	0	ENST00000257290.5:c.1915C>A	p.Gln639Lys	p.Q639K	ENST00000257290	NM_006206.4	639	Caa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175638	112175638	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0080199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	50	296	0	ENST00000257430.4:c.4347del	p.Lys1449AsnfsTer24	p.K1449Nfs*24	ENST00000257430	NM_000038.5	1449	aaG/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0065276-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			252	122	293	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979365	93979365	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs968186662		P-0065276-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			104	108	400	0	ENST00000369303.4:c.1463G>A	p.Arg488Gln	p.R488Q	ENST00000369303	NM_004440.3	488	cGg/cAg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230590	46230590	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065276-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			327	143	505	0	ENST00000334344.6:c.839A>T	p.Asp280Val	p.D280V	ENST00000334344	NM_152641.2	280	gAt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220692	1220711	+	frameshift_variant	Frame_Shift_Del	DEL	ACATCTGGTCGGCTGGGGTC	ACATCTGGTCGGCTGGGGTC	-			P-0065276-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			189	270	481	0	ENST00000326873.7:c.712_731del	p.Ile238ProfsTer21	p.I238Pfs*21	ENST00000326873	NM_000455.4	237	gACATCTGGTCGGCTGGGGTC/g																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326148	62326148	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	A	A	G			P-0065276-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			349	176	447	0	ENST00000482936.1:c.3164A>G	p.Gln1055Arg	p.Q1055R	ENST00000482936		1055	cAg/cGg																																																																															
CDH1	999	MSKCC	GRCh37	16	68849586	68849586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	82	698	1	ENST00000261769.5:c.1489G>A	p.Glu497Lys	p.E497K	ENST00000261769	NM_004360.3	497	Gag/Aag																																																																															
PARK2	5071	MSKCC	GRCh37	6	161807839	161807839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	64	559	0	ENST00000366898.1:c.1154G>T	p.Gly385Val	p.G385V	ENST00000366898	NM_004562.2	385	gGa/gTa																																																																															
INHA	3623	MSKCC	GRCh37	2	220439489	220439489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	69	675	0	ENST00000243786.2:c.342G>T	p.Met114Ile	p.M114I	ENST00000243786	NM_002191.3	114	atG/atT																																																																															
USP8	9101	MSKCC	GRCh37	15	50773855	50773855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	91	616	0	ENST00000307179.4:c.1396C>T	p.His466Tyr	p.H466Y	ENST00000307179		466	Cat/Tat																																																																															
MED12	9968	MSKCC	GRCh37	X	70343537	70343537	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	104	230	0	ENST00000374080.3:c.1711C>A	p.Leu571Met	p.L571M	ENST00000374080		571	Ctg/Atg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043937	180043937	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0079033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	46	617	0	ENST00000261937.6:c.3059A>T	p.Gln1020Leu	p.Q1020L	ENST00000261937	NM_182925.4	1020	cAg/cTg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81528527	81528527	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	65	394	0	ENST00000298171.2:c.206G>C	p.Ser69Thr	p.S69T	ENST00000298171	NM_000369.2	69	aGt/aCt																																																																															
NADK	65220	MSKCC	GRCh37	1	1696676	1696676	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	37	532	0	ENST00000341426.5:c.170A>G	p.Lys57Arg	p.K57R	ENST00000341426	NM_023018.4	57	aAg/aGg																																																																															
ALK	238	MSKCC	GRCh37	2	29450449	29450449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	70	714	0	ENST00000389048.3:c.2905G>T	p.Ala969Ser	p.A969S	ENST00000389048	NM_004304.4	969	Gct/Tct																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467419	66467419	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	82	577	0	ENST00000273854.3:c.850G>C	p.Val284Leu	p.V284L	ENST00000273854	NM_004439.5	284	Gtg/Ctg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0079366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	50	445	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098918	178098918	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182428269		P-0079366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	77	573	0	ENST00000397062.3:c.127C>T	p.Arg43Trp	p.R43W	ENST00000397062	NM_006164.4	43	Cgg/Tgg																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983299	149983301	+	inframe_deletion	In_Frame_Del	DEL	TAA	TAA	-	rs758808789		P-0079366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	64	574	0	ENST00000253339.5:c.2957_2959del	p.Ile986del	p.I986del	ENST00000253339		986	aTTAaa/aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604683	48604683	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	67	556	0	ENST00000342988.3:c.1506del	p.Met503Ter	p.M503*	ENST00000342988	NM_005359.5	502	aGg/ag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221232	1221233	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0079366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	67	579	0	ENST00000326873.7:c.756_757del	p.Tyr253ProfsTer12	p.Y253Pfs*12	ENST00000326873	NM_000455.4	252	cTG/c																																																																															
SOS1	6654	MSKCC	GRCh37	2	39249897	39249914	+	inframe_deletion	In_Frame_Del	DEL	TTGTTACATCAAGCATCC	TTGTTACATCAAGCATCC	-			P-0079366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	43	548	0	ENST00000402219.2:c.1655_1672del	p.Arg552_Thr557del	p.R552_T557del	ENST00000402219	NM_005633.3	552	aGGATGCTTGATGTAACAAtg/atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380281	25380286	+	protein_altering_variant	In_Frame_Del	DEL	TGCTGT	TGCTGT	CAG			P-0079366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	59	455	0	ENST00000256078.4:c.172_177delinsCTG	p.Thr58_Ala59delinsLeu	p.T58_A59delinsL	ENST00000256078	NM_033360.2	58	ACAGCA/CTG																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600429	10600429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079389-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			176	390	426	0	ENST00000171111.5:c.1426G>T	p.Gly476Trp	p.G476W	ENST00000171111	NM_203500.1	476	Ggg/Tgg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948545	71948545	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138596491		P-0079389-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			492	113	514	0	ENST00000298229.2:c.3257G>A	p.Arg1086His	p.R1086H	ENST00000298229	NM_001567.3	1086	cGt/cAt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520725	176520725	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079389-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			322	71	293	0	ENST00000292408.4:c.1468G>T	p.Asp490Tyr	p.D490Y	ENST00000292408	NM_213647.1	490	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0079389-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			75	77	255	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CARM1	10498	MSKCC	GRCh37	19	10982575	10982575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764822141		P-0079389-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			429	93	508	0	ENST00000327064.4:c.197C>T	p.Ser66Leu	p.S66L	ENST00000327064	NM_199141.1	66	tCg/tTg																																																																															
FH	2271	MSKCC	GRCh37	1	241661219	241661219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079389-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			97	93	305	0	ENST00000366560.3:c.1442C>T	p.Thr481Ile	p.T481I	ENST00000366560	NM_000143.3	481	aCc/aTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230901	66230901	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0079389-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			70	57	319	0	ENST00000273854.3:c.2070T>A	p.Cys690Ter	p.C690*	ENST00000273854	NM_004439.5	690	tgT/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0079555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	101	326	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226809	2226809	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756329795		P-0079555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	83	374	0	ENST00000398665.3:c.4289C>T	p.Ala1430Val	p.A1430V	ENST00000398665	NM_032482.2	1430	gCg/gTg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39708753	39708753	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	43	280	0	ENST00000361337.2:c.364G>C	p.Asp122His	p.D122H	ENST00000361337	NM_003286.2	122	Gat/Cat																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561366	9561366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	109	425	0	ENST00000353224.5:c.416C>T	p.Ala139Val	p.A139V	ENST00000353224	NM_177990.2	139	gCt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0079559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	72	175	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206658601	206658601	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs879953097		P-0079559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	218	319	0	ENST00000367120.3:c.1574G>A	p.Arg525Gln	p.R525Q	ENST00000367120	NM_014002.3	525	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587782272		P-0079559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	328	239	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
SMAD2	4087	MSKCC	GRCh37	18	45374945	45374945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	159	276	0	ENST00000262160.6:c.898G>A	p.Asp300Asn	p.D300N	ENST00000262160	NM_005901.5	300	Gat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0079559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	354	225	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39250054	39250054	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	130	238	0	ENST00000402219.2:c.1515T>A	p.Asp505Glu	p.D505E	ENST00000402219	NM_005633.3	505	gaT/gaA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061196	38061196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	36	468	0	ENST00000250448.2:c.793C>T	p.Arg265Cys	p.R265C	ENST00000250448	NM_004496.3	265	Cgc/Tgc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46252681	46252681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	37	331	0	ENST00000371998.3:c.110G>T	p.Arg37Ile	p.R37I	ENST00000371998		37	aGa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	276	428	0	ENST00000269305.4:c.517G>C	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ctg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0079564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	268	201	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0079567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	45	251	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0079567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	50	337	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220707	1220707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	66	340	0	ENST00000326873.7:c.725G>T	p.Gly242Val	p.G242V	ENST00000326873	NM_000455.4	242	gGg/gTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222966	53222966	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0079567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	42	381	0	ENST00000375401.3:c.4106C>G	p.Ser1369Ter	p.S1369*	ENST00000375401	NM_004187.3	1369	tCa/tGa																																																																															
MED12	9968	MSKCC	GRCh37	X	70339937	70339937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	39	400	0	ENST00000374080.3:c.470C>A	p.Ala157Asp	p.A157D	ENST00000374080		157	gCc/gAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221009	36221009	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	52	395	0	ENST00000222270.7:c.5059G>T	p.Asp1687Tyr	p.D1687Y	ENST00000222270	NM_014727.1	1687	Gat/Tat																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244067	153244067	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			769	58	397	0	ENST00000281708.4:c.2090T>A	p.Leu697Gln	p.L697Q	ENST00000281708	NM_033632.3	697	cTg/cAg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1940184	1940184	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	20	153	0	ENST00000382895.3:c.1681A>G	p.Thr561Ala	p.T561A	ENST00000382895	NM_133330.2	561	Aca/Gca																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987404	2987404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	57	382	0	ENST00000396946.4:c.25G>T	p.Asp9Tyr	p.D9Y	ENST00000396946	NM_032415.4	9	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0079569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	140	462	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264066389		P-0079569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	118	369	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68930087	68930087	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0079569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	14	353	0	ENST00000288368.4:c.148T>G	p.Leu50Val	p.L50V	ENST00000288368	NM_024870.2	50	Tta/Gta																																																																															
APC	324	MSKCC	GRCh37	5	112175745	112175745	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	85	461	0	ENST00000257430.4:c.4454del	p.Ala1485ValfsTer22	p.A1485Vfs*22	ENST00000257430	NM_000038.5	1485	gCt/gt																																																																															
APC	324	MSKCC	GRCh37	5	112174907	112174907	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	81	408	0	ENST00000257430.4:c.3616del	p.Ser1206ValfsTer59	p.S1206Vfs*59	ENST00000257430	NM_000038.5	1206	Agt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0079584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	642	673	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713386	40713386	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	549	676	0	ENST00000373198.4:c.4129C>T	p.Arg1377Ter	p.R1377*	ENST00000373198	NM_133170.3	1377	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857958	9857958	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140536516		P-0079584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	253	579	0	ENST00000330684.3:c.3443C>T	p.Pro1148Leu	p.P1148L	ENST00000330684	NM_001134407.1	1148	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112173560	112173560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	172	572	0	ENST00000257430.4:c.2269C>T	p.Gln757Ter	p.Q757*	ENST00000257430	NM_000038.5	757	Caa/Taa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390816	139390816	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			859	260	692	0	ENST00000277541.6:c.7375del	p.Gln2459ArgfsTer18	p.Q2459Rfs*18	ENST00000277541	NM_017617.3	2459	Cag/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0079584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	206	303	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134898785	134898785	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	179	434	0	ENST00000398015.3:c.1843G>T	p.Asp615Tyr	p.D615Y	ENST00000398015	NM_004441.4	615	Gat/Tat																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393343	139393537	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCGCTCACCCTGTTGTTCTGCATATCTTTGTTAGCCCCGTTCTTCAGGAGCACAACTGCGGCATCCACATTGTTCACGGCGGCGGCCCAGTGCAGGGCGGACTTGCCTGCGTGAAAGAAGCAGATGGGGTAGGTTGGAGACCAGCTGGAGGCAACCCAGTCCCACCCGTCCCTGTGGCGGTCCCGCCCCACGACA	GCGCTCACCCTGTTGTTCTGCATATCTTTGTTAGCCCCGTTCTTCAGGAGCACAACTGCGGCATCCACATTGTTCACGGCGGCGGCCCAGTGCAGGGCGGACTTGCCTGCGTGAAAGAAGCAGATGGGGTAGGTTGGAGACCAGCTGGAGGCAACCCAGTCCCACCCGTCCCTGTGGCGGTCCCGCCCCACGACA	-			P-0079584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			727	119	516	0	ENST00000277541.6:c.6082+27_6180+8del		p.X2028_splice	ENST00000277541	NM_017617.3	2028																																																																																
ESR1	2099	MSKCC	GRCh37	6	152419940	152419945	+	missense_variant	Missense_Mutation	ONP	ATGCTG	ATGCTG	GCGGCG			P-0080061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	10	418	1	ENST00000206249.3:c.1627_1631delinsGCGGC	p.Met543_Leu544delinsAlaAla	p.M543_L544delinsAA	ENST00000206249	NM_000125.3	543	ATGCTG/GCGGCG																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202585	67202585	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374915842		P-0080062-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	192	456	0	ENST00000312629.5:c.1394G>A	p.Arg465His	p.R465H	ENST00000312629	NM_003952.2	465	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0080062-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			50	130	327	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696457	47696462	+	inframe_deletion	In_Frame_Del	DEL	TGCCCG	TGCCCG	-			P-0080062-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	154	345	0	ENST00000347630.2:c.361_366del	p.Arg121_Ala122del	p.R121_A122del	ENST00000347630	NM_001007230.1	121	CGGGCA/-																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602529	10602529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080062-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	118	422	0	ENST00000171111.5:c.1049G>A	p.Gly350Asp	p.G350D	ENST00000171111	NM_203500.1	350	gGc/gAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098438	11098438	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080062-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	96	353	0	ENST00000344626.4:c.956C>G	p.Pro319Arg	p.P319R	ENST00000344626	NM_003072.3	319	cCa/cGa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591154	67591155	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	CC			P-0080062-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			91	229	289	0	ENST00000274335.5:c.1745+2_1745+3insCC		p.X582_splice	ENST00000274335		582																																																																																
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0080063-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	76	282	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782144		P-0080063-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	208	436	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120056	70120056	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762041707		P-0080063-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	129	289	0	ENST00000245479.2:c.1058C>T	p.Pro353Leu	p.P353L	ENST00000245479	NM_000346.3	353	cCg/cTg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562478	21562478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080063-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	121	331	0	ENST00000382592.4:c.1441G>T	p.Ala481Ser	p.A481S	ENST00000382592	NM_014572.2	481	Gcg/Tcg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202089	67202089	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080063-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	210	373	0	ENST00000312629.5:c.1192A>T	p.Ile398Phe	p.I398F	ENST00000312629	NM_003952.2	398	Atc/Ttc																																																																															
KDR	3791	MSKCC	GRCh37	4	55973923	55973923	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080063-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	97	342	0	ENST00000263923.4:c.1393G>C	p.Glu465Gln	p.E465Q	ENST00000263923	NM_002253.2	465	Gag/Cag																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502753	149502753	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080063-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	188	323	0	ENST00000261799.4:c.2035A>T	p.Ile679Phe	p.I679F	ENST00000261799	NM_002609.3	679	Atc/Ttc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183270	56183270	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080063-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	161	300	1	ENST00000399503.3:c.4180A>T	p.Arg1394Trp	p.R1394W	ENST00000399503	NM_005921.1	1394	Agg/Tgg																																																																															
ATRX	546	MSKCC	GRCh37	X	76938952	76938952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080063-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	206	377	0	ENST00000373344.5:c.1796C>T	p.Pro599Leu	p.P599L	ENST00000373344	NM_000489.3	599	cCa/cTa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851697	134851698	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0080063-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	160	373	0	ENST00000398015.3:c.1103_1104delinsCT	p.Arg368Pro	p.R368P	ENST00000398015	NM_004441.4	368	cGG/cCT																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128018839	128018839	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0080063-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	168	329	0	ENST00000285398.2:c.2029C>T	p.Gln677Ter	p.Q677*	ENST00000285398	NM_000122.1	677	Cag/Tag																																																																															
STAG2	10735	MSKCC	GRCh37	X	123224533	123224533	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080063-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	167	357	0	ENST00000218089.9:c.3386C>G	p.Pro1129Arg	p.P1129R	ENST00000218089	NM_001042749.1	1129	cCc/cGc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645694	12645694	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs3730271		P-0080063-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	191	376	0	ENST00000251849.4:c.775T>A	p.Ser259Thr	p.S259T	ENST00000251849	NM_002880.3	259	Tcc/Acc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45799253	45799253	+	intron_variant	Intron	SNP	C	C	A			P-0080063-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	83	354	0	ENST00000372115.3:c.158-20G>T		p.*53*	ENST00000372115	NM_001048171.1																																																																																	
KMT2C	58508	MSKCC	GRCh37	7	151845985	151845985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080063-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	200	378	0	ENST00000262189.6:c.13027G>A	p.Glu4343Lys	p.E4343K	ENST00000262189	NM_170606.2	4343	Gaa/Aaa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	463	305	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	303	332	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs587781525		P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			67	309	425	0	ENST00000269305.4:c.842A>T	p.Asp281Val	p.D281V	ENST00000269305	NM_001126112.2	281	gAc/gTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528674	8528674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			59	137	373	0	ENST00000356435.5:c.458C>T	p.Pro153Leu	p.P153L	ENST00000356435		153	cCg/cTg																																																																															
MYC	4609	MSKCC	GRCh37	8	128750695	128750695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	466	433	0	ENST00000377970.2:c.232C>T	p.Pro78Ser	p.P78S	ENST00000377970	NM_002467.4	78	Cct/Tct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200088180		P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	42	433	0	ENST00000301067.7:c.1940C>A	p.Pro647Gln	p.P647Q	ENST00000301067	NM_003482.3	647	cCa/cAa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50826578	50826578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	51	214	0	ENST00000398568.2:c.2303C>T	p.Pro768Leu	p.P768L	ENST00000398568	NM_001042412.1	768	cCt/cTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138535	11138535	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	90	393	0	ENST00000344626.4:c.3291C>G	p.His1097Gln	p.H1097Q	ENST00000344626	NM_003072.3	1097	caC/caG																																																																															
SYK	6850	MSKCC	GRCh37	9	93627356	93627356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	42	283	0	ENST00000375746.1:c.823C>A	p.Gln275Lys	p.Q275K	ENST00000375746	NM_001174167.1	275	Caa/Aaa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11113778	11113778	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	48	387	0	ENST00000344626.4:c.1886C>A	p.Thr629Lys	p.T629K	ENST00000344626	NM_003072.3	629	aCa/aAa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214721	5214721	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	49	349	0	ENST00000357368.4:c.4345G>T	p.Ala1449Ser	p.A1449S	ENST00000357368	NM_002850.3	1449	Gcc/Tcc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198257724	198257724	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	82	349	0	ENST00000335508.6:c.3728C>A	p.Pro1243Gln	p.P1243Q	ENST00000335508	NM_012433.2	1243	cCa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112178910	112178910	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	75	422	0	ENST00000257430.4:c.7619C>A	p.Pro2540Gln	p.P2540Q	ENST00000257430	NM_000038.5	2540	cCa/cAa																																																																															
RAC1	5879	MSKCC	GRCh37	7	6431659	6431659	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	333	233	0	ENST00000356142.4:c.212C>G	p.Ser71Cys	p.S71C	ENST00000356142	NM_018890.3	71	tCc/tGc																																																																															
FH	2271	MSKCC	GRCh37	1	241669384	241669384	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	70	249	0	ENST00000366560.3:c.823G>T	p.Gly275Ter	p.G275*	ENST00000366560	NM_000143.3	275	Gga/Tga																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61305231	61305231	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	93	290	0	ENST00000341074.5:c.895T>A	p.Leu299Met	p.L299M	ENST00000341074	NM_002974.2	299	Ttg/Atg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971126	21971141	+	frameshift_variant	Frame_Shift_Del	DEL	GAGTGGCGGGGTCGGC	GAGTGGCGGGGTCGGC	-			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	111	411	0	ENST00000304494.5:c.217_232del	p.Ala73SerfsTer68	p.A73Sfs*68	ENST00000304494	NM_000077.4	73	GCCGACCCCGCCACTCtc/tc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504372	8504372	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			69	109	299	0	ENST00000356435.5:c.1711A>T	p.Arg571Trp	p.R571W	ENST00000356435		571	Agg/Tgg																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66526123	66526123	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	69	355	0	ENST00000358598.2:c.954G>T	p.Leu318Phe	p.L318F	ENST00000358598	NM_212471.2	318	ttG/ttT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879652	151879652	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	245	350	0	ENST00000262189.6:c.5293G>C	p.Ala1765Pro	p.A1765P	ENST00000262189	NM_170606.2	1765	Gct/Cct																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438193	110438193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			56	190	308	0	ENST00000375856.3:c.208C>T	p.Pro70Ser	p.P70S	ENST00000375856	NM_003749.2	70	Ccg/Tcg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176665289	176665289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	42	390	0	ENST00000439151.2:c.3973G>T	p.Ala1325Ser	p.A1325S	ENST00000439151	NM_022455.4	1325	Gct/Tct																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829170	72829170	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	119	406	0	ENST00000268489.5:c.7411C>A	p.Leu2471Ile	p.L2471I	ENST00000268489	NM_006885.3	2471	Ctc/Atc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123184034	123184034	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	117	339	0	ENST00000218089.9:c.894-2A>C		p.X298_splice	ENST00000218089	NM_001042749.1	298																																																																																
GPS2	2874	MSKCC	GRCh37	17	7216723	7216723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	333	455	0	ENST00000380728.2:c.700G>T	p.Gly234Cys	p.G234C	ENST00000380728		234	Ggc/Tgc																																																																															
TERT	7015	MSKCC	GRCh37	5	1278853	1278853	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			960	58	439	0	ENST00000310581.5:c.2189C>A	p.Ala730Asp	p.A730D	ENST00000310581	NM_198253.2	730	gCc/gAc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741664	145741664	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			804	55	437	0	ENST00000428558.2:c.839G>C	p.Ser280Thr	p.S280T	ENST00000428558	NM_004260.3	280	aGc/aCc																																																																															
MYC	4609	MSKCC	GRCh37	8	128750771	128750771	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	455	393	0	ENST00000377970.2:c.308G>T	p.Gly103Val	p.G103V	ENST00000377970	NM_002467.4	103	gGc/gTc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741793	145741793	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			822	67	499	0	ENST00000428558.2:c.710C>A	p.Pro237Gln	p.P237Q	ENST00000428558	NM_004260.3	237	cCa/cAa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117638312	117638312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	28	295	0	ENST00000368508.3:c.6129G>T	p.Met2043Ile	p.M2043I	ENST00000368508	NM_002944.2	2043	atG/atT																																																																															
MDC1	9656	MSKCC	GRCh37	6	30668391	30668391	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	222	313	0	ENST00000376406.3:c.6121A>C	p.Thr2041Pro	p.T2041P	ENST00000376406	NM_014641.2	2041	Aca/Cca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0080065-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	164	369	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0080065-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	134	404	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372045	45372045	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080065-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	177	327	0	ENST00000262160.6:c.1124A>C	p.Lys375Thr	p.K375T	ENST00000262160	NM_005901.5	375	aAa/aCa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198265573	198265573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080065-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	183	384	0	ENST00000335508.6:c.2584G>A	p.Glu862Lys	p.E862K	ENST00000335508	NM_012433.2	862	Gaa/Aaa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981168	201981171	+	frameshift_variant	Frame_Shift_Del	DEL	AACA	AACA	-			P-0080065-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	380	464	0	ENST00000359651.3:c.248_251del	p.Asn83SerfsTer71	p.N83Sfs*71	ENST00000359651		83	AACAag/ag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212664	36212664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080065-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	195	436	0	ENST00000222270.7:c.2415G>T	p.Lys805Asn	p.K805N	ENST00000222270	NM_014727.1	805	aaG/aaT																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046379	128046379	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080065-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	163	381	0	ENST00000285398.2:c.884A>T	p.Tyr295Phe	p.Y295F	ENST00000285398	NM_000122.1	295	tAt/tTt																																																																															
APC	324	MSKCC	GRCh37	5	112175598	112175600	+	frameshift_variant	Frame_Shift_Del	DEL	GTA	GTA	TT			P-0080065-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	26	470	0	ENST00000257430.4:c.4307_4309delinsTT	p.Ser1436IlefsTer37	p.S1436Ifs*37	ENST00000257430	NM_000038.5	1436	aGTAaa/aTTaa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473619	67473619	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0080065-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	194	397	0	ENST00000327367.4:c.699C>A	p.Cys233Ter	p.C233*	ENST00000327367	NM_005902.3	233	tgC/tgA																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479802	67479802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080065-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	155	409	0	ENST00000327367.4:c.1109G>A	p.Cys370Tyr	p.C370Y	ENST00000327367	NM_005902.3	370	tGc/tAc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849818	156849818	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761967383		P-0080080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	132	375	0	ENST00000524377.1:c.2074C>T	p.Arg692Cys	p.R692C	ENST00000524377	NM_002529.3	692	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	89	275	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786202962		P-0080080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	236	524	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41566486	41566486	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	101	302	0	ENST00000263253.7:c.4363C>G	p.Gln1455Glu	p.Q1455E	ENST00000263253	NM_001429.3	1455	Cag/Gag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376820	118376820	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0080080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			765	172	422	0	ENST00000534358.1:c.10213A>C	p.Ser3405Arg	p.S3405R	ENST00000534358	NM_005933.3	3405	Agt/Cgt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861994	57861994	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	122	414	0	ENST00000228682.2:c.1295C>A	p.Pro432Gln	p.P432Q	ENST00000228682	NM_005269.2	432	cCa/cAa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619188	37619195	+	frameshift_variant	Frame_Shift_Del	DEL	CACCCGGT	CACCCGGT	-			P-0080080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			822	156	504	0	ENST00000447079.4:c.868_875del	p.Arg290GlufsTer5	p.R290Efs*5	ENST00000447079	NM_015083.1	288	agCACCCGGTca/agca																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498514	89498514	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	86	336	0	ENST00000336596.2:c.2486C>G	p.Ser829Cys	p.S829C	ENST00000336596	NM_005233.5	829	tCc/tGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151834000	151834000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	157	329	0	ENST00000262189.6:c.14653G>A	p.Asp4885Asn	p.D4885N	ENST00000262189	NM_170606.2	4885	Gac/Aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241723	55241724	+	missense_variant	Missense_Mutation	DNP	GC	GC	CA			P-0080080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	125	353	1	ENST00000275493.2:c.2171_2172delinsCA	p.Gly724Ala	p.G724A	ENST00000275493	NM_005228.3	724	gGC/gCA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410321	63410321	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			742	168	525	0	ENST00000330258.3:c.2846A>G	p.Tyr949Cys	p.Y949C	ENST00000330258	NM_152424.3	949	tAt/tGt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0080082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	85	335	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CD276	80381	MSKCC	GRCh37	15	73996251	73996251	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1446179438		P-0080082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	14	122	0	ENST00000318443.5:c.985C>T	p.Arg329Cys	p.R329C	ENST00000318443	NM_001024736.1	329	Cgc/Tgc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467536	66467536	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	86	452	0	ENST00000273854.3:c.733G>C	p.Asp245His	p.D245H	ENST00000273854	NM_004439.5	245	Gac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0080084-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	112	536	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593533	48593533	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080084-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	105	320	0	ENST00000342988.3:c.1284G>T	p.Lys428Asn	p.K428N	ENST00000342988	NM_005359.5	428	aaG/aaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0080084-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	85	291	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245814	41245815	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0080084-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	104	372	0	ENST00000357654.3:c.1733_1734del	p.Ser578CysfsTer7	p.S578Cfs*7	ENST00000357654	NM_007294.3	578	tCT/t																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612899	228612899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080084-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			714	184	740	0	ENST00000366696.1:c.128G>A	p.Arg43Gln	p.R43Q	ENST00000366696	NM_003493.2	43	cGg/cAg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374245	138374245	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	28	340	0	ENST00000289153.2:c.3199G>C	p.Asp1067His	p.D1067H	ENST00000289153	NM_006219.2	1067	Gac/Cac																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136270	2136270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1371745883		P-0079534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	36	485	0	ENST00000219476.3:c.4739G>A	p.Arg1580Gln	p.R1580Q	ENST00000219476	NM_000548.3	1580	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0079534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	149	533	0	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
ZNRF3	84133	MSKCC	GRCh37	22	29449570	29449570	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	26	293	0	ENST00000544604.2:c.2771C>G	p.Pro924Arg	p.P924R	ENST00000544604	NM_001206998.1	924	cCg/cGg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061829	38061855	+	inframe_deletion	In_Frame_Del	DEL	TCATGGTGTTCATGGTCATGTAGGTGT	TCATGGTGTTCATGGTCATGTAGGTGT	-			P-0080005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	182	507	0	ENST00000250448.2:c.134_160del	p.Asn45_Met53del	p.N45_M53del	ENST00000250448	NM_004496.3	45	aACACCTACATGACCATGAACACCATGAct/act																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246517	46246517	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0080005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	130	409	0	ENST00000334344.6:c.4612del	p.Ile1538LeufsTer28	p.I1538Lfs*28	ENST00000334344	NM_152641.2	1537	agA/ag																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727454	66727454	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519909		P-0080007-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	18	375	0	ENST00000307102.5:c.170A>C	p.Lys57Thr	p.K57T	ENST00000307102	NM_002755.3	57	aAg/aCg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0080007-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			772	34	440	0	ENST00000275493.2:c.2303_2311dup	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0080008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	28	372	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	15	279	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252866	36252866	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	413	309	0	ENST00000300305.3:c.496C>G	p.Arg166Gly	p.R166G	ENST00000300305		166	Cga/Gga																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523279	9523279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763590647		P-0080096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	151	407	0	ENST00000353224.5:c.1958G>A	p.Arg653Gln	p.R653Q	ENST00000353224	NM_177990.2	653	cGg/cAg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713612	30713612	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55751315		P-0080096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	324	429	0	ENST00000359013.4:c.1012C>T	p.Arg338Trp	p.R338W	ENST00000359013	NM_001024847.2	338	Cgg/Tgg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080550	5080550	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0080096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	101	314	0	ENST00000381652.3:c.2301A>C	p.Glu767Asp	p.E767D	ENST00000381652	NM_004972.3	767	gaA/gaC																																																																															
MSH2	4436	MSKCC	GRCh37	2	47693887	47693887	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	214	322	0	ENST00000233146.2:c.1601G>C	p.Arg534Pro	p.R534P	ENST00000233146	NM_000251.2	534	cGt/cCt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374519	118374535	+	frameshift_variant	Frame_Shift_Del	DEL	TATGGAGTAAGATCCTA	TATGGAGTAAGATCCTA	-			P-0080096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	409	492	0	ENST00000534358.1:c.7913_7929del	p.Tyr2638TrpfsTer2	p.Y2638Wfs*2	ENST00000534358	NM_005933.3	2638	TATGGAGTAAGATCCTAt/t																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016676	12016676	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0080096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			33	275	384	1	ENST00000353533.5:c.812C>T	p.Ala271Val	p.A271V	ENST00000353533	NM_003010.3	271	gCa/gTa																																																																															
CDH1	999	MSKCC	GRCh37	16	68842584	68842598	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTGTCTTCAGATC	TTTTGTCTTCAGATC	-			P-0080096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			31	295	392	0	ENST00000261769.5:c.532-12_534del		p.X178_splice	ENST00000261769	NM_004360.3	178																																																																																
TBX3	6926	MSKCC	GRCh37	12	115112638	115112638	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	84	365	0	ENST00000257566.3:c.1102T>G	p.Leu368Val	p.L368V	ENST00000257566	NM_016569.3	368	Tta/Gta																																																																															
RECQL	5965	MSKCC	GRCh37	12	21627910	21627910	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1176731657		P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	79	311	0	ENST00000421138.2:c.1220G>A	p.Arg407Gln	p.R407Q	ENST00000421138		407	cGa/cAa																																																																															
RB1	5925	MSKCC	GRCh37	13	49033861	49033861	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	179	305	0	ENST00000267163.4:c.1998T>A	p.Cys666Ter	p.C666*	ENST00000267163	NM_000321.2	666	tgT/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730882026		P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	219	336	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794903	242794903	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	82	441	1	ENST00000334409.5:c.306C>A	p.Asn102Lys	p.N102K	ENST00000334409	NM_005018.2	102	aaC/aaA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187531158	187531158	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	101	310	0	ENST00000441802.2:c.9865A>T	p.Ile3289Phe	p.I3289F	ENST00000441802	NM_005245.3	3289	Atc/Ttc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515187	149515187	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			724	105	454	0	ENST00000261799.4:c.295T>G	p.Phe99Val	p.F99V	ENST00000261799	NM_002609.3	99	Ttt/Gtt																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196093	138196093	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1405321250		P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	274	363	0	ENST00000237289.4:c.407G>A	p.Arg136His	p.R136H	ENST00000237289	NM_001270507.1	136	cGc/cAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449786	8449786	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	186	361	0	ENST00000356435.5:c.3927G>T	p.Glu1309Asp	p.E1309D	ENST00000356435		1309	gaG/gaT																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932609	39932609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	196	252	0	ENST00000378444.4:c.1990G>A	p.Glu664Lys	p.E664K	ENST00000378444	NM_001123385.1	664	Gag/Aag																																																																															
SDHC	6391	MSKCC	GRCh37	1	161326481	161326481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	69	243	0	ENST00000367975.2:c.256G>A	p.Gly86Ser	p.G86S	ENST00000367975	NM_003001.3	86	Ggc/Agc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163307884	163307884	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	165	352	0	ENST00000271452.3:c.509+1G>A		p.X170_splice	ENST00000271452	NM_145697.2	170																																																																																
MUTYH	4595	MSKCC	GRCh37	1	45799137	45799137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			742	141	496	0	ENST00000372115.3:c.254G>T	p.Ser85Ile	p.S85I	ENST00000372115	NM_001048171.1	85	aGc/aTc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748012	72748012	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	116	402	0	ENST00000357731.5:c.166G>C	p.Ala56Pro	p.A56P	ENST00000357731	NM_173808.2	56	Gcg/Ccg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78428615	78428616	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	138	231	0	ENST00000370768.2:c.1184-1_1184delinsTT		p.X395_splice	ENST00000370768	NM_003902.3	395																																																																																
MYOD1	4654	MSKCC	GRCh37	11	17741933	17741933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	212	304	1	ENST00000250003.3:c.604C>A	p.Pro202Thr	p.P202T	ENST00000250003	NM_002478.4	202	Ccg/Acg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18715665	18715665	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	177	308	0	ENST00000266497.5:c.3496C>A	p.Pro1166Thr	p.P1166T	ENST00000266497		1166	Cct/Act																																																																															
FLT1	2321	MSKCC	GRCh37	13	28885761	28885761	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	158	310	0	ENST00000282397.4:c.3601C>G	p.Pro1201Ala	p.P1201A	ENST00000282397	NM_002019.4	1201	Ccg/Gcg																																																																															
SCG5	6447	MSKCC	GRCh37	15	32972107	32972107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	89	336	0	ENST00000300175.4:c.367G>A	p.Gly123Arg	p.G123R	ENST00000300175	NM_001144757.1	123	Gga/Aga																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51507411	51507411	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	195	349	0	ENST00000260433.2:c.877A>G	p.Arg293Gly	p.R293G	ENST00000260433		293	Aga/Gga																																																																															
FANCA	2175	MSKCC	GRCh37	16	89813292	89813292	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	74	283	0	ENST00000389301.3:c.3355T>G	p.Phe1119Val	p.F1119V	ENST00000389301	NM_000135.2	1119	Ttc/Gtc																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38787844	38787844	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	124	246	0	ENST00000348513.6:c.816G>C	p.Arg272Ser	p.R272S	ENST00000348513	NM_003079.4	272	agG/agC																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872975	136872975	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			661	139	424	0	ENST00000241393.3:c.523G>C	p.Ala175Pro	p.A175P	ENST00000241393	NM_003467.2	175	Gcc/Ccc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085865	16085865	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	92	355	0	ENST00000281043.3:c.1041G>C	p.Gln347His	p.Q347H	ENST00000281043	NM_005378.4	347	caG/caC																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426776	212426776	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	109	397	0	ENST00000342788.4:c.2339T>A	p.Leu780Gln	p.L780Q	ENST00000342788	NM_005235.2	780	cTa/cAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713365	40713365	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			936	151	489	0	ENST00000373198.4:c.4150G>C	p.Glu1384Gln	p.E1384Q	ENST00000373198	NM_133170.3	1384	Gag/Cag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713373	40713373	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			939	144	493	0	ENST00000373198.4:c.4142A>C	p.Lys1381Thr	p.K1381T	ENST00000373198	NM_133170.3	1381	aAg/aCg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670460	134670460	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	417	342	0	ENST00000398015.3:c.371A>T	p.Lys124Met	p.K124M	ENST00000398015	NM_004441.4	124	aAg/aTg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664628	138664628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	160	272	0	ENST00000330315.3:c.937G>T	p.Gly313Trp	p.G313W	ENST00000330315	NM_023067.3	313	Ggg/Tgg																																																																															
ATR	545	MSKCC	GRCh37	3	142277543	142277543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			741	102	228	0	ENST00000350721.4:c.1808C>T	p.Ser603Phe	p.S603F	ENST00000350721	NM_001184.3	603	tCt/tTt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936305	49936305	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	308	504	0	ENST00000296474.3:c.1543G>T	p.Asp515Tyr	p.D515Y	ENST00000296474	NM_002447.2	515	Gac/Tac																																																																															
TET2	54790	MSKCC	GRCh37	4	106162513	106162513	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	82	253	0	ENST00000380013.4:c.3427G>C	p.Asp1143His	p.D1143H	ENST00000380013	NM_001127208.2	1143	Gat/Cat																																																																															
GAB1	2549	MSKCC	GRCh37	4	144381530	144381530	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	79	294	0	ENST00000262994.4:c.1695del	p.Met566CysfsTer27	p.M566Cfs*27	ENST00000262994	NM_002039.3	565	Ccc/cc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268131	153268131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	110	379	0	ENST00000281708.4:c.677C>T	p.Thr226Ile	p.T226I	ENST00000281708	NM_033632.3	226	aCa/aTa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55152066	55152066	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			904	125	372	0	ENST00000257290.5:c.2498A>T	p.Lys833Met	p.K833M	ENST00000257290	NM_006206.4	833	aAg/aTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197730	66197730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	106	330	0	ENST00000273854.3:c.2969G>T	p.Gly990Val	p.G990V	ENST00000273854	NM_004439.5	990	gGa/gTa																																																																															
SDHA	6389	MSKCC	GRCh37	5	240480	240480	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	33	87	0	ENST00000264932.6:c.1440A>C	p.Lys480Asn	p.K480N	ENST00000264932	NM_004168.2	480	aaA/aaC																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31511143	31511143	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	190	259	0	ENST00000344624.3:c.1431A>T	p.Leu477Phe	p.L477F	ENST00000344624		477	ttA/ttT																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876358	35876358	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	136	352	0	ENST00000303115.3:c.1150T>A	p.Ser384Thr	p.S384T	ENST00000303115	NM_002185.3	384	Tct/Act																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239632	31239632	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	156	282	0	ENST00000376228.5:c.87G>T	p.Met29Ile	p.M29I	ENST00000376228	NM_002117.5	29	atG/atT																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288291	33288291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	330	442	0	ENST00000374542.5:c.1117G>T	p.Asp373Tyr	p.D373Y	ENST00000374542	NM_001141970.1	373	Gat/Tat																																																																															
PREX2	80243	MSKCC	GRCh37	8	69005879	69005879	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	146	355	0	ENST00000288368.4:c.2290G>T	p.Ala764Ser	p.A764S	ENST00000288368	NM_024870.2	764	Gct/Tct																																																																															
PREX2	80243	MSKCC	GRCh37	8	69009295	69009295	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	125	326	0	ENST00000288368.4:c.2412G>T	p.Lys804Asn	p.K804N	ENST00000288368	NM_024870.2	804	aaG/aaT																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139811017	139811017	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	94	283	0	ENST00000247668.2:c.628G>T	p.Gly210Cys	p.G210C	ENST00000247668	NM_021138.3	210	Ggc/Tgc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635160	87635160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	186	345	0	ENST00000277120.3:c.2212C>A	p.Pro738Thr	p.P738T	ENST00000277120		738	Cca/Aca																																																																															
BTK	695	MSKCC	GRCh37	X	100612503	100612503	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	206	174	0	ENST00000308731.7:c.1171G>C	p.Gly391Arg	p.G391R	ENST00000308731	NM_000061.2	391	Gga/Cga																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0079392-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			58	32	318	0				ENST00000310581	NM_198253.2																																																																																	
RIT1	6016	MSKCC	GRCh37	1	155870291	155870291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079392-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			69	10	393	0	ENST00000368323.3:c.548G>A	p.Arg183His	p.R183H	ENST00000368323	NM_006912.5	183	cGt/cAt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123179204	123179204	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079392-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			29	14	323	0	ENST00000218089.9:c.653C>G	p.Thr218Arg	p.T218R	ENST00000218089	NM_001042749.1	218	aCa/aGa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249014	55249015	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCCCCCATC			P-0079392-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			97	50	466	0	ENST00000275493.2:c.2317_2318insCATCCCCCC	p.Pro772_His773insProSerPro	p.P772_H773insPSP	ENST00000275493	NM_005228.3	771	aac/aaCCCCCCATCc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201772	66201772	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0079392-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			45	14	423	0	ENST00000273854.3:c.2730A>C	p.Leu910Phe	p.L910F	ENST00000273854	NM_004439.5	910	ttA/ttC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0079615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			625	37	372	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0079615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			385	40	247	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2137888	2137888	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			599	32	373	0	ENST00000219476.3:c.5014del	p.Ile1672SerfsTer154	p.I1672Sfs*154	ENST00000219476	NM_000548.3	1672	Atc/tc																																																																															
RHOA	387	MSKCC	GRCh37	3	49413010	49413010	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519952		P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	114	291	1	ENST00000418115.1:c.13C>T	p.Arg5Trp	p.R5W	ENST00000418115	NM_001664.2	5	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	63	324	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
ATR	545	MSKCC	GRCh37	3	142261554	142261555	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1043355995		P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	100	193	0	ENST00000350721.4:c.3402dup	p.Asn1135Ter	p.N1135*	ENST00000350721	NM_001184.3	1134	-/T																																																																															
CASP8	841	MSKCC	GRCh37	2	202139610	202139611	+	splice_acceptor_variant	Splice_Site	INS	-	-	G			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	112	304	0	ENST00000358485.4:c.775dup		p.X259_splice	ENST00000358485	NM_001080125.1	259																																																																																
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	65	150	0	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	62	349	2	ENST00000331920.6:c.3921del	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	72	344	0	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	104	226	0	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
SMO	6608	MSKCC	GRCh37	7	128843237	128843237	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	22	328	0	ENST00000249373.3:c.349del	p.Arg117AlafsTer5	p.R117Afs*5	ENST00000249373	NM_005631.4	115	gCc/gc																																																																															
CIC	23152	MSKCC	GRCh37	19	42796747	42796747	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	95	392	0	ENST00000575354.2:c.3205C>T	p.Gln1069Ter	p.Q1069*	ENST00000575354	NM_015125.3	1069	Cag/Tag																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771987	135771988	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs118203743		P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	63	372	0	ENST00000298552.3:c.3127_3129dup	p.Ser1043dup	p.S1043dup	ENST00000298552	NM_001162426.1	1043	-/AGC																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259480	16259480	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	141	428	0	ENST00000375759.3:c.6750del	p.Ala2251GlnfsTer102	p.A2251Qfs*102	ENST00000375759	NM_015001.2	2249	Ccc/cc																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792732	33792737	+	inframe_deletion	In_Frame_Del	DEL	GCGGGT	GCGGGT	-	rs1002805239		P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	38	293	1	ENST00000498907.2:c.584_589del	p.His195_Pro196del	p.H195_P196del	ENST00000498907	NM_004364.3	195	cACCCGCcg/ccg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	40	404	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
MED12	9968	MSKCC	GRCh37	X	70339654	70339654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			91	107	151	0	ENST00000374080.3:c.323G>A	p.Arg108Gln	p.R108Q	ENST00000374080		108	cGa/cAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	74	401	3	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041262	29041262	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	97	271	1	ENST00000282397.4:c.166del	p.Glu56LysfsTer12	p.E56Kfs*12	ENST00000282397	NM_002019.4	56	Gaa/aa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274173	10274173	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	91	313	1	ENST00000330684.3:c.96del	p.Ala33ArgfsTer2	p.A33Rfs*2	ENST00000330684	NM_001134407.1	32	ccC/cc																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149290773	149290774	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	112	250	0	ENST00000360632.3:c.445dup	p.Ile149AsnfsTer8	p.I149Nfs*8	ENST00000360632	NM_015472.4	149	atc/aAtc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222425	2222425	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772319590		P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	88	392	0	ENST00000398665.3:c.3257G>A	p.Arg1086His	p.R1086H	ENST00000398665	NM_032482.2	1086	cGc/cAc																																																																															
TET1	80312	MSKCC	GRCh37	10	70333164	70333164	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	122	320	0	ENST00000373644.4:c.1069G>T	p.Glu357Ter	p.E357*	ENST00000373644	NM_030625.2	357	Gaa/Taa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324543	31324543	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	68	287	0	ENST00000412585.2:c.265C>T	p.Gln89Ter	p.Q89*	ENST00000412585	NM_005514.6	89	Cag/Tag																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910766	29910766	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	111	437	0	ENST00000376809.5:c.309del	p.Thr104ProfsTer18	p.T104Pfs*18	ENST00000376809	NM_002116.7	102	ctG/ct																																																																															
INSR	3643	MSKCC	GRCh37	19	7143007	7143007	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151246790		P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	139	391	0	ENST00000302850.5:c.2362G>A	p.Val788Met	p.V788M	ENST00000302850	NM_000208.2	788	Gtg/Atg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445207	29445208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	223	412	0	ENST00000544604.2:c.1046_1047dup	p.Glu350TrpfsTer14	p.E350Wfs*14	ENST00000544604	NM_001206998.1	346	-/GT																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115276424	115276425	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	100	273	0	ENST00000438362.2:c.903dup	p.Glu302Ter	p.E302*	ENST00000438362	NM_001242891.1	301	-/T																																																																															
TERT	7015	MSKCC	GRCh37	5	1264681	1264681	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	108	351	0	ENST00000310581.5:c.2681A>G	p.Tyr894Cys	p.Y894C	ENST00000310581	NM_198253.2	894	tAt/tGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445838	49445838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	135	462	0	ENST00000301067.7:c.1628C>T	p.Ser543Leu	p.S543L	ENST00000301067	NM_003482.3	543	tCg/tTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41513818	41513818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	89	238	0	ENST00000263253.7:c.722C>A	p.Pro241His	p.P241H	ENST00000263253	NM_001429.3	241	cCt/cAt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2114386	2114387	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	51	399	0	ENST00000219476.3:c.1565_1566dup	p.His523ThrfsTer13	p.H523Tfs*13	ENST00000219476	NM_000548.3	519	-/CA																																																																															
FANCA	2175	MSKCC	GRCh37	16	89833550	89833550	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	24	250	0	ENST00000389301.3:c.2600del	p.Lys867SerfsTer22	p.K867Sfs*22	ENST00000389301	NM_000135.2	867	aAg/ag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2126113	2126113	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	91	351	0	ENST00000219476.3:c.2684T>G	p.Met895Arg	p.M895R	ENST00000219476	NM_000548.3	895	aTg/aGg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11150219	11150219	+	intron_variant	Intron	SNP	G	G	A			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	132	259	0	ENST00000344626.4:c.4171-1764G>A		p.*1391*	ENST00000344626	NM_003072.3																																																																																	
KMT2B	9757	MSKCC	GRCh37	19	36223523	36223525	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	86	463	0	ENST00000222270.7:c.6079_6081del	p.Glu2027del	p.E2027del	ENST00000222270	NM_014727.1	2025	GAG/-																																																																															
KDR	3791	MSKCC	GRCh37	4	55961046	55961046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	44	272	0	ENST00000263923.4:c.2894G>A	p.Ser965Asn	p.S965N	ENST00000263923	NM_002253.2	965	aGc/aAc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7989411	7989411	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	19	367	0	ENST00000319144.4:c.275C>A	p.Pro92His	p.P92H	ENST00000319144	NM_001139.2	92	cCc/cAc																																																																															
CIC	23152	MSKCC	GRCh37	19	42796741	42796741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	92	388	0	ENST00000575354.2:c.3199C>T	p.Pro1067Ser	p.P1067S	ENST00000575354	NM_015125.3	1067	Ccc/Tcc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448291	56448292	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	136	407	0	ENST00000407977.2:c.355dup	p.Cys119LeufsTer6	p.C119Lfs*6	ENST00000407977		119	tgc/tTgc																																																																															
CCND1	595	MSKCC	GRCh37	11	69465987	69465988	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAG	rs756792055		P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	90	424	0	ENST00000227507.2:c.839_841dup	p.Glu280dup	p.E280dup	ENST00000227507	NM_053056.2	280	-/GAG																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202066	67202066	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	48	347	0	ENST00000312629.5:c.1169T>C	p.Val390Ala	p.V390A	ENST00000312629	NM_003952.2	390	gTg/gCg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246069	41246069	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	107	308	0	ENST00000357654.3:c.1479A>G	p.Ile493Met	p.I493M	ENST00000357654	NM_007294.3	493	atA/atG																																																																															
RAD51	5888	MSKCC	GRCh37	15	41021831	41021831	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	108	292	0	ENST00000267868.3:c.773A>G	p.Glu258Gly	p.E258G	ENST00000267868	NM_002875.4	258	gAg/gGg																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045669	26045669	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	99	359	0	ENST00000540144.1:c.31T>C	p.Ser11Pro	p.S11P	ENST00000540144	NM_003531.2	11	Tct/Cct																																																																															
TSC1	7248	MSKCC	GRCh37	9	135780983	135780983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	112	308	0	ENST00000298552.3:c.1982G>A	p.Ser661Asn	p.S661N	ENST00000298552	NM_001162426.1	661	aGc/aAc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325800	65325800	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	155	347	0	ENST00000342505.4:c.1322A>G	p.His441Arg	p.H441R	ENST00000342505	NM_002227.2	441	cAt/cGt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910371	29910371	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TG			P-0079988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	112	655	0	ENST00000376809.5:c.41delinsTG	p.Ser14LeufsTer85	p.S14Lfs*85	ENST00000376809	NM_002116.7	14	tCg/tTGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0079990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	454	395	4	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0079990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	214	438	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0079990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	214	250	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306553	41306553	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	140	274	3	ENST00000373198.4:c.1106G>T	p.Gly369Val	p.G369V	ENST00000373198	NM_133170.3	369	gGt/gTt																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166483	118166483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	29	396	0	ENST00000369448.3:c.993C>A	p.Asn331Lys	p.N331K	ENST00000369448	NM_017709.3	331	aaC/aaA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106801	27106801	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	389	477	4	ENST00000324856.7:c.6412del	p.Thr2138HisfsTer62	p.T2138Hfs*62	ENST00000324856	NM_006015.4	2138	Aca/ca																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983077	201983078	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTGT			P-0079990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	456	399	1	ENST00000359651.3:c.930_935dup	p.Val311_Ala312dup	p.V311_A312dup	ENST00000359651		311	gag/gaGGCTGTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602340	10602340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	43	347	0	ENST00000171111.5:c.1238G>T	p.Arg413Leu	p.R413L	ENST00000171111	NM_203500.1	413	cGt/cTt																																																																															
KDR	3791	MSKCC	GRCh37	4	55955113	55955113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0080010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	29	245	0	ENST00000263923.4:c.3432C>A	p.His1144Gln	p.H1144Q	ENST00000263923	NM_002253.2	1144	caC/caA																																																																															
RASA1	5921	MSKCC	GRCh37	5	86665655	86665655	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0080010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	23	194	0	ENST00000274376.6:c.1636C>T	p.Gln546Ter	p.Q546*	ENST00000274376	NM_002890.2	546	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0080010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	46	182	1	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230561365	230561365	+	5_prime_UTR_variant	5'UTR	SNP	G	G	C			P-0080010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	36	455	0	ENST00000391860.1:c.-36C>G		p.*12*	ENST00000391860	NM_001258311.1																																																																																	
TBX3	6926	MSKCC	GRCh37	12	115111984	115111984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0080010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	33	308	0	ENST00000257566.3:c.1756G>T	p.Val586Phe	p.V586F	ENST00000257566	NM_016569.3	586	Gtc/Ttc																																																																															
STK11	6794	MSKCC	GRCh37	19	1219412	1219416	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGC	GGTGC	-			P-0080010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	59	256	0	ENST00000326873.7:c.464+1_464+5del		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
PAX5	5079	MSKCC	GRCh37	9	37002684	37002684	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0080010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	24	304	0	ENST00000358127.4:c.565T>A	p.Ser189Thr	p.S189T	ENST00000358127	NM_001280556.1	189	Tcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0080046-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	68	338	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577134	7577138	+	frameshift_variant	Frame_Shift_Del	DEL	GTTCC	GTTCC	-			P-0080046-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	67	494	0	ENST00000269305.4:c.800_804del	p.Arg267GlnfsTer3	p.R267Qfs*3	ENST00000269305	NM_001126112.2	267	cGGAAC/c																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0080050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	191	488	9	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0080050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	243	423	4	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398280	25398281	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0080050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	167	237	1	ENST00000256078.4:c.38_39delinsTT	p.Gly13Val	p.G13V	ENST00000256078	NM_033360.2	13	gGC/gTT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389273	8389273	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0080050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	198	367	2	ENST00000356435.5:c.4345G>C	p.Ala1449Pro	p.A1449P	ENST00000356435		1449	Gcc/Ccc																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5549445	5549445	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141466336		P-0071482-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			562	80	729	0	ENST00000397747.3:c.472G>A	p.Val158Ile	p.V158I	ENST00000397747	NM_025239.3	158	Gtc/Atc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52693362	52693362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071482-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			563	33	603	0	ENST00000322088.6:c.13G>A	p.Asp5Asn	p.D5N	ENST00000322088	NM_014225.5	5	Gac/Aac																																																																															
STAT3	6774	MSKCC	GRCh37	17	40474419	40474419	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071482-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			617	32	602	0	ENST00000264657.5:c.1982A>T	p.Asp661Val	p.D661V	ENST00000264657	NM_139276.2	661	gAt/gTt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52693404	52693404	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0071482-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			606	37	715	0	ENST00000322088.6:c.55G>T	p.Glu19Ter	p.E19*	ENST00000322088	NM_014225.5	19	Gaa/Taa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254948	16254948	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071482-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			601	56	683	0	ENST00000375759.3:c.2213G>C	p.Gly738Ala	p.G738A	ENST00000375759	NM_015001.2	738	gGa/gCa																																																																															
MPL	4352	MSKCC	GRCh37	1	43818325	43818325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071482-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			562	82	695	0	ENST00000372470.3:c.1790C>T	p.Ser597Phe	p.S597F	ENST00000372470	NM_005373.2	597	tCt/tTt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246044	41246047	+	frameshift_variant	Frame_Shift_Del	DEL	ATTT	ATTT	-			P-0071482-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			520	93	686	0	ENST00000357654.3:c.1501_1504del	p.Lys501Ter	p.K501*	ENST00000357654	NM_007294.3	501	AAATta/ta																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78432738	78432738	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071482-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			411	70	424	0	ENST00000370768.2:c.338G>T	p.Gly113Val	p.G113V	ENST00000370768	NM_003902.3	113	gGa/gTa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032162	10032162	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0071482-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			485	70	508	0	ENST00000330684.3:c.661A>T	p.Lys221Ter	p.K221*	ENST00000330684	NM_001134407.1	221	Aag/Tag																																																																															
MET	4233	MSKCC	GRCh37	7	116411884	116411915	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTTCTCTCTGTTTTAAGATCTGGGCAGTGA	TCTTTCTCTCTGTTTTAAGATCTGGGCAGTGA	-			P-0071482-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			569	90	826	0	ENST00000397752.3:c.2888-19_2900del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
SETD2	29072	MSKCC	GRCh37	3	47164376	47164377	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0071482-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			414	73	534	0	ENST00000409792.3:c.1749dup	p.Gln584ThrfsTer6	p.Q584Tfs*6	ENST00000409792	NM_014159.6	583	-/A																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254983	16254983	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071482-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			603	56	624	0	ENST00000375759.3:c.2248G>C	p.Asp750His	p.D750H	ENST00000375759	NM_015001.2	750	Gat/Cat																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52693416	52693416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071482-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			620	42	769	0	ENST00000322088.6:c.67G>A	p.Glu23Lys	p.E23K	ENST00000322088	NM_014225.5	23	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0071701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	10	279	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15960889	15960889	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	28	338	0	ENST00000268712.3:c.6331C>G	p.His2111Asp	p.H2111D	ENST00000268712	NM_006311.3	2111	Cat/Gat																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650391	48650391	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200509606		P-0079086-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			300	23	509	0	ENST00000376670.3:c.361G>A	p.Val121Met	p.V121M	ENST00000376670	NM_002049.3	121	Gtg/Atg																																																																															
ALK	238	MSKCC	GRCh37	2	29443631	29443631	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519784		P-0079086-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			225	113	436	0	ENST00000389048.3:c.3586C>A	p.Leu1196Met	p.L1196M	ENST00000389048	NM_004304.4	1196	Ctg/Atg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0079556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			123	368	416	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0079556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			155	308	534	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660045		P-0079556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			160	133	442	0	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790678	89790678	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			452	168	585	0	ENST00000336032.3:c.65G>C	p.Gly22Ala	p.G22A	ENST00000336032	NM_006813.2	22	gGc/gCc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143114267	143114267	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0079556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			230	127	393	0	ENST00000262992.4:c.1154T>G	p.Leu385Arg	p.L385R	ENST00000262992	NM_001101669.1	385	cTc/cGc																																																																															
SDHA	6389	MSKCC	GRCh37	5	225631	225631	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	97	355	0	ENST00000264932.6:c.410A>G	p.Asp137Gly	p.D137G	ENST00000264932	NM_004168.2	137	gAt/gGt																																																																															
RHEB	6009	MSKCC	GRCh37	7	151181842	151181842	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			413	157	379	0	ENST00000262187.5:c.173T>A	p.Leu58His	p.L58H	ENST00000262187	NM_005614.3	58	cTt/cAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944481	40944482	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0079556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			578	106	560	0	ENST00000373198.4:c.2020_2021delinsAT	p.Pro674Ile	p.P674I	ENST00000373198	NM_133170.3	674	CCt/ATt																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45860601	45860601	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			791	156	610	0	ENST00000391945.4:c.1406A>G	p.Lys469Arg	p.K469R	ENST00000391945	NM_000400.3	469	aAg/aGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	GGTG	GGTG	-			P-0079650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	146	369	0	ENST00000269305.4:c.532_535del	p.His178MetfsTer68	p.H178Mfs*68	ENST00000269305	NM_001126112.2	178	CACCat/at																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0079650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	35	239	0	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt																																																																															
ATM	472	MSKCC	GRCh37	11	108206685	108206685	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0079650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	79	191	0	ENST00000278616.4:c.8265T>A	p.Tyr2755Ter	p.Y2755*	ENST00000278616	NM_000051.3	2755	taT/taA																																																																															
APC	324	MSKCC	GRCh37	5	112162826	112162826	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	136	235	0	ENST00000257430.4:c.1431del	p.Glu477AspfsTer21	p.E477Dfs*21	ENST00000257430	NM_000038.5	477	gAa/ga																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006224	22006224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	44	482	0	ENST00000276925.6:c.179G>A	p.Arg60His	p.R60H	ENST00000276925	NM_004936.3	60	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175552	112175552	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	241	449	0	ENST00000257430.4:c.4261del	p.Ser1421ValfsTer52	p.S1421Vfs*52	ENST00000257430	NM_000038.5	1421	Agt/gt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0079704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	277	334	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031885	26031885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	134	439	0	ENST00000244661.2:c.404G>T	p.Arg135Ile	p.R135I	ENST00000244661	NM_003537.3	135	aGa/aTa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992519	72992519	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	58	461	0	ENST00000268489.5:c.1526A>G	p.Glu509Gly	p.E509G	ENST00000268489	NM_006885.3	509	gAg/gGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	308	364	0	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0079705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	215	353	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0079705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	171	349	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
ALK	238	MSKCC	GRCh37	2	29436902	29436902	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771475772		P-0079705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	216	322	0	ENST00000389048.3:c.3691C>T	p.Arg1231Trp	p.R1231W	ENST00000389048	NM_004304.4	1231	Cgg/Tgg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022712	31022712	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs387907078		P-0079705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	527	382	0	ENST00000375687.4:c.2197C>T	p.Gln733Ter	p.Q733*	ENST00000375687	NM_015338.5	733	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0079705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	135	173	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
EED	8726	MSKCC	GRCh37	11	85977204	85977204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	43	161	0	ENST00000263360.6:c.806G>A	p.Arg269Lys	p.R269K	ENST00000263360	NM_003797.3	269	aGa/aAa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554355	63554356	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0079705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	314	332	0	ENST00000307078.5:c.382_383dup	p.Leu128PhefsTer4	p.L128Ffs*4	ENST00000307078	NM_004655.3	128	tta/ttTTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0079720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	8	574	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0079720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	72	588	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0079720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			83	42	398	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921567	178921567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	18	363	0	ENST00000263967.3:c.1049A>G	p.Asp350Gly	p.D350G	ENST00000263967	NM_006218.2	350	gAc/gGc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654607	67654607	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	15	384	0	ENST00000264010.4:c.1094A>G	p.Lys365Arg	p.K365R	ENST00000264010	NM_006565.3	365	aAa/aGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0079720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			78	27	349	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175580	112175580	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	34	562	0	ENST00000257430.4:c.4290del	p.Met1431CysfsTer42	p.M1431Cfs*42	ENST00000257430	NM_000038.5	1430	aCc/ac																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526862	31526862	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	15	492	0	ENST00000344624.3:c.178T>A	p.Ser60Thr	p.S60T	ENST00000344624		60	Tcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0079839-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	163	301	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0079839-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	204	344	0	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
ATR	545	MSKCC	GRCh37	3	142212051	142212051	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079839-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	194	342	0	ENST00000350721.4:c.6001C>T	p.Arg2001Ter	p.R2001*	ENST00000350721	NM_001184.3	2001	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0079891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	222	417	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
NF1	4763	MSKCC	GRCh37	17	29483076	29483076	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	107	370	0	ENST00000358273.4:c.136del	p.Ile46PhefsTer10	p.I46Ffs*10	ENST00000358273	NM_001042492.2	46	Att/tt																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362483	40362483	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	192	411	0	ENST00000293328.3:c.1713G>A	p.Trp571Ter	p.W571*	ENST00000293328	NM_012448.3	571	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577155	7577173	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTACTCAGGATAGGAAAA	ACTACTCAGGATAGGAAAA	-			P-0079891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	178	431	0	ENST00000269305.4:c.783-18_783del		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
PLK2	10769	MSKCC	GRCh37	5	57754586	57754586	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	112	347	0	ENST00000274289.3:c.461A>G	p.Asn154Ser	p.N154S	ENST00000274289	NM_006622.3	154	aAc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750600586		P-0079892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			803	21	496	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0079892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			884	40	520	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0079892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			755	71	355	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0079893-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	59	460	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032536	47032536	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079893-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	57	283	0	ENST00000329236.7:c.211C>T	p.Gln71Ter	p.Q71*	ENST00000329236	NM_001204466.1	71	Cag/Tag																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872330	35872355	+	splice_donor_variant,intron_variant	Splice_Site	DEL	GGGGCAGGGCAGGGAGGCAGACATAC	GGGGCAGGGCAGGGAGGCAGACATAC	-			P-0079894-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	100	423	0	ENST00000216797.5:c.547+1_547+26del		p.X183_splice	ENST00000216797	NM_020529.2	183																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178917538	178917538	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079894-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	61	374	0	ENST00000263967.3:c.413A>T	p.Asp138Val	p.D138V	ENST00000263967	NM_006218.2	138	gAc/gTc																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045846	26045846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079894-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			957	72	665	0	ENST00000540144.1:c.208C>T	p.Arg70Cys	p.R70C	ENST00000540144	NM_003531.2	70	Cgc/Tgc																																																																															
MET	4233	MSKCC	GRCh37	7	116411884	116411885	+	intron_variant	Intron	INS	-	-	CTTTCTCTCTGTTTTAAGATCTGGGCAGTGA			P-0079894-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1108	397	517	0	ENST00000397752.3:c.2888-18_2900dup	p.Glu967AspfsTer11	p.E967Dfs*11	ENST00000397752	NM_000245.2	967																																																																																
BBC3	27113	MSKCC	GRCh37	19	47729895	47729895	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079894-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	40	489	0	ENST00000449228.1:c.494G>C	p.Gly165Ala	p.G165A	ENST00000449228	NM_001127240.2	165	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0079896-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	9	412	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	359972	359972	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0079896-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	21	441	0	ENST00000262320.3:c.1116+1G>A		p.X372_splice	ENST00000262320	NM_003502.3	372																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0079897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	344	463	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060789	38060789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	448	667	0	ENST00000250448.2:c.1200C>G	p.Phe400Leu	p.F400L	ENST00000250448	NM_004496.3	400	ttC/ttG																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061906	38061906	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	407	604	0	ENST00000250448.2:c.83C>G	p.Ser28Cys	p.S28C	ENST00000250448	NM_004496.3	28	tCc/tGc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060986	38060986	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	332	548	0	ENST00000250448.2:c.1003C>G	p.Leu335Val	p.L335V	ENST00000250448	NM_004496.3	335	Ctg/Gtg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240069	41240069	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1482440466		P-0079940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			75	86	132	0	ENST00000379561.5:c.281T>C	p.Val94Ala	p.V94A	ENST00000379561	NM_002015.3	94	gTg/gCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0079940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	328	425	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0079940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	99	200	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974782	21974782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138677674		P-0079940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	295	440	0	ENST00000304494.5:c.45G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tgG/tgA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444858	49444858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	234	464	0	ENST00000301067.7:c.2608G>A	p.Glu870Lys	p.E870K	ENST00000301067	NM_003482.3	870	Gag/Aag																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569955	95569955	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	161	434	0	ENST00000343455.3:c.3778G>C	p.Val1260Leu	p.V1260L	ENST00000343455	NM_177438.2	1260	Gta/Cta																																																																															
CD79B	974	MSKCC	GRCh37	17	62007168	62007169	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0079940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	268	423	0	ENST00000392795.3:c.513_514delinsAA	p.Leu172Ile	p.L172I	ENST00000392795	NM_001039933.1	171	atCCtc/atAAtc																																																																															
KDR	3791	MSKCC	GRCh37	4	55984864	55984864	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	263	315	0	ENST00000263923.4:c.265A>G	p.Thr89Ala	p.T89A	ENST00000263923	NM_002253.2	89	Aca/Gca																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520490	176520490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	343	444	0	ENST00000292408.4:c.1335G>T	p.Leu445Phe	p.L445F	ENST00000292408	NM_213647.1	445	ttG/ttT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117622172	117622172	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	116	285	0	ENST00000368508.3:c.6698C>G	p.Ala2233Gly	p.A2233G	ENST00000368508	NM_002944.2	2233	gCa/gGa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508895	106508895	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	337	378	0	ENST00000359195.3:c.889C>G	p.Leu297Val	p.L297V	ENST00000359195	NM_002649.2	297	Ctc/Gtc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508910	106508910	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	344	387	0	ENST00000359195.3:c.904G>C	p.Glu302Gln	p.E302Q	ENST00000359195	NM_002649.2	302	Gag/Cag																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699514	117699514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138215115		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	39	419	0	ENST00000369458.3:c.127G>A	p.Ala43Thr	p.A43T	ENST00000369458	NM_024626.3	43	Gcc/Acc																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150933382	150933382	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1220025296		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	99	461	1	ENST00000271640.5:c.2849del	p.Pro950GlnfsTer16	p.P950Qfs*16	ENST00000271640	NM_001145415.1	948	caC/ca																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111012	193111012	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	59	374	0	ENST00000367435.3:c.545T>A	p.Ile182Asn	p.I182N	ENST00000367435	NM_024529.4	182	aTt/aAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101438	27101438	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	69	331	0	ENST00000324856.7:c.4724del	p.Pro1575HisfsTer37	p.P1575Hfs*37	ENST00000324856	NM_006015.4	1574	Ccc/cc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123324079	123324079	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780458049		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	51	319	0	ENST00000358487.5:c.391G>A	p.Gly131Arg	p.G131R	ENST00000358487	NM_000141.4	131	Gga/Aga																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	136	432	1	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438647	49438647	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	80	421	0	ENST00000301067.7:c.4843C>T	p.Arg1615Ter	p.R1615*	ENST00000301067	NM_003482.3	1615	Cga/Tga																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50492581	50492581	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	88	364	0	ENST00000394963.4:c.1477C>T	p.Arg493Ter	p.R493*	ENST00000394963	NM_003076.4	493	Cga/Tga																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	87	398	0	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964206	28964206	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	58	369	0	ENST00000282397.4:c.1696del	p.Met566CysfsTer8	p.M566Cfs*8	ENST00000282397	NM_002019.4	566	Atg/tg																																																																															
BLM	641	MSKCC	GRCh37	15	91295110	91295110	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28384991		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	57	389	0	ENST00000355112.3:c.893C>T	p.Thr298Met	p.T298M	ENST00000355112	NM_000057.2	298	aCg/aTg																																																																															
BLM	641	MSKCC	GRCh37	15	91333930	91333930	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs762354041		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	62	384	0	ENST00000355112.3:c.2875C>T	p.Arg959Ter	p.R959*	ENST00000355112	NM_000057.2	959	Cga/Tga																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647470	3647470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	63	553	0	ENST00000294008.3:c.1593G>T	p.Trp531Cys	p.W531C	ENST00000294008	NM_032444.2	531	tgG/tgT																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647656	3647657	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1344612471		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	52	459	0	ENST00000294008.3:c.1406dup	p.Leu470IlefsTer8	p.L470Ifs*8	ENST00000294008	NM_032444.2	469	cca/ccCa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	90	516	0	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346158	89346158	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	80	485	1	ENST00000301030.4:c.6792del	p.Ala2265ProfsTer72	p.A2265Pfs*72	ENST00000301030	NM_001256183.1	2264	ccC/cc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	84	576	2	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435815	56435815	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755967475		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	75	516	0	ENST00000407977.2:c.1322del	p.Pro441LeufsTer61	p.P441Lfs*61	ENST00000407977		441	cCt/ct																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	195	547	2	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584514	48584514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	62	419	0	ENST00000342988.3:c.692del	p.Gly231AlafsTer10	p.G231Afs*10	ENST00000342988	NM_005359.5	229	ctG/ct																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591925	48591925	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660556		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	93	390	0	ENST00000342988.3:c.1088G>A	p.Cys363Tyr	p.C363Y	ENST00000342988	NM_005359.5	363	tGt/tAt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250789	10250789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	79	442	0	ENST00000340748.4:c.3691G>A	p.Gly1231Ser	p.G1231S	ENST00000340748		1231	Ggc/Agc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11100054	11100054	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1046318786		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	77	441	0	ENST00000344626.4:c.1180G>A	p.Gly394Arg	p.G394R	ENST00000344626	NM_003072.3	394	Ggg/Agg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	29	273	0	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919027	50919027	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775310798		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	68	435	0	ENST00000440232.2:c.2764G>A	p.Val922Ile	p.V922I	ENST00000440232	NM_002691.3	922	Gtc/Atc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	70	478	3	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5212059	5212059	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770983463		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	83	479	0	ENST00000357368.4:c.4972G>A	p.Ala1658Thr	p.A1658T	ENST00000357368	NM_002850.3	1658	Gca/Aca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	54	403	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128015230	128015230	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs189511674		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	72	379	0	ENST00000285398.2:c.2291C>T	p.Ser764Leu	p.S764L	ENST00000285398	NM_000122.1	764	tCg/tTg																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	46	348	0	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171709	36171709	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	92	415	0	ENST00000300305.3:c.856C>T	p.Gln286Ter	p.Q286*	ENST00000300305		286	Caa/Taa																																																																															
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	79	536	3	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445208	29445209	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	87	485	0	ENST00000544604.2:c.1046_1047del	p.Val349GlyfsTer117	p.V349Gfs*117	ENST00000544604	NM_001206998.1	347	GTg/g																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446611	29446611	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	45	408	0	ENST00000544604.2:c.2442del	p.Pro815ArgfsTer11	p.P815Rfs*11	ENST00000544604	NM_001206998.1	814	ccA/cc																																																																															
ATR	545	MSKCC	GRCh37	3	142261555	142261555	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	56	340	0	ENST00000350721.4:c.3402del	p.Phe1134LeufsTer6	p.F1134Lfs*6	ENST00000350721	NM_001184.3	1134	ttT/tt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	12	383	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182683417	182683417	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	62	337	0	ENST00000292782.4:c.128A>T	p.Asn43Ile	p.N43I	ENST00000292782	NM_020640.2	43	aAt/aTt																																																																															
BCL6	604	MSKCC	GRCh37	3	187451339	187451339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200263685		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	59	397	0	ENST00000232014.4:c.143C>T	p.Thr48Met	p.T48M	ENST00000232014	NM_001130845.1	48	aCg/aTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048002	180048002	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775336901		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	84	539	0	ENST00000261937.6:c.2173G>A	p.Asp725Asn	p.D725N	ENST00000261937	NM_182925.4	725	Gac/Aac																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	49	320	0	ENST00000303115.3:c.361del	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199945	138199945	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	85	471	0	ENST00000237289.4:c.1368del	p.Pro457LeufsTer20	p.P457Lfs*20	ENST00000237289	NM_001270507.1	455	Ggg/gg																																																																															
SMO	6608	MSKCC	GRCh37	7	128845518	128845518	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748004767		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	75	421	0	ENST00000249373.3:c.815C>T	p.Ala272Val	p.A272V	ENST00000249373	NM_005631.4	272	gCg/gTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	54	329	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467843	50467843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	55	419	0	ENST00000331340.3:c.1078C>T	p.Arg360Cys	p.R360C	ENST00000331340	NM_006060.4	360	Cgc/Tgc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737081	145737081	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747815189		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	69	449	1	ENST00000428558.2:c.3485G>A	p.Arg1162His	p.R1162H	ENST00000428558	NM_004260.3	1162	cGc/cAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390736	139390736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	101	598	2	ENST00000277541.6:c.7455del	p.Ser2486ArgfsTer103	p.S2486Rfs*103	ENST00000277541	NM_017617.3	2485	ccC/cc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139397753	139397753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	154	452	0	ENST00000277541.6:c.5048G>A	p.Arg1683Gln	p.R1683Q	ENST00000277541	NM_017617.3	1683	cGg/cAg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2058453	2058453	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs576817778		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	78	348	0	ENST00000349721.2:c.1510C>T	p.Arg504Trp	p.R504W	ENST00000349721	NM_003070.3	504	Cgg/Tgg																																																																															
BTK	695	MSKCC	GRCh37	X	100611138	100611138	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868978699		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	75	465	2	ENST00000308731.7:c.1468C>T	p.Arg490Cys	p.R490C	ENST00000308731	NM_000061.2	490	Cgc/Tgc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933400	39933400	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	100	599	0	ENST00000378444.4:c.1199del	p.Gly400AlafsTer42	p.G400Afs*42	ENST00000378444	NM_001123385.1	400	gGc/gc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223796	53223796	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	69	578	0	ENST00000375401.3:c.3563G>C	p.Cys1188Ser	p.C1188S	ENST00000375401	NM_004187.3	1188	tGt/tCt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120484200	120484200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	81	443	0	ENST00000256646.2:c.2930C>T	p.Ala977Val	p.A977V	ENST00000256646	NM_024408.3	977	gCa/gTa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256100	16256100	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	110	560	0	ENST00000375759.3:c.3365A>G	p.Gln1122Arg	p.Q1122R	ENST00000375759	NM_015001.2	1122	cAa/cGa																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154452	2154452	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	43	345	0	ENST00000434045.2:c.476A>G	p.Asp159Gly	p.D159G	ENST00000434045	NM_001127598.1	159	gAc/gGc																																																																															
RAD52	5893	MSKCC	GRCh37	12	1022585	1022585	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	21	274	0	ENST00000358495.3:c.1229T>C	p.Met410Thr	p.M410T	ENST00000358495	NM_134424.2	410	aTg/aCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427456	49427456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	78	526	1	ENST00000301067.7:c.11032G>A	p.Ala3678Thr	p.A3678T	ENST00000301067	NM_003482.3	3678	Gcc/Acc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864528	57864528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	67	517	0	ENST00000228682.2:c.2005G>A	p.Val669Met	p.V669M	ENST00000228682	NM_005269.2	669	Gtg/Atg																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233447	69233447	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	169	509	0	ENST00000462284.1:c.1312C>A	p.Leu438Ile	p.L438I	ENST00000462284	NM_002392.5	438	Ctt/Att																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549377	21549377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	89	475	0	ENST00000382592.4:c.2899C>A	p.Leu967Met	p.L967M	ENST00000382592	NM_014572.2	967	Ctg/Atg																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873811	35873811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	49	298	0	ENST00000216797.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000216797	NM_020529.2	14	Gag/Aag																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609453	81609453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	74	446	1	ENST00000298171.2:c.1051C>T	p.His351Tyr	p.H351Y	ENST00000298171	NM_000369.2	351	Cat/Tat																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639978	3639978	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	54	452	1	ENST00000294008.3:c.3661del	p.Ala1221ArgfsTer67	p.A1221Rfs*67	ENST00000294008	NM_032444.2	1221	Gcg/cg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56865768	56865768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	66	362	0	ENST00000308159.5:c.1100C>T	p.Thr367Met	p.T367M	ENST00000308159	NM_014669.4	367	aCg/aTg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58700950	58700950	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1245022636		P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	76	472	0	ENST00000305921.3:c.541C>T	p.Arg181Trp	p.R181W	ENST00000305921	NM_003620.3	181	Cgg/Tgg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753168	42753168	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	105	533	0	ENST00000222329.4:c.1096T>C	p.Ser366Pro	p.S366P	ENST00000222329	NM_006494.2	366	Tca/Cca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214667	5214667	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	73	481	0	ENST00000357368.4:c.4399C>G	p.Pro1467Ala	p.P1467A	ENST00000357368	NM_002850.3	1467	Ccg/Gcg																																																																															
INSR	3643	MSKCC	GRCh37	19	7117194	7117194	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	102	487	0	ENST00000302850.5:c.4022G>C	p.Gly1341Ala	p.G1341A	ENST00000302850	NM_000208.2	1341	gGg/gCg																																																																															
INHA	3623	MSKCC	GRCh37	2	220439429	220439429	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	68	415	0	ENST00000243786.2:c.282G>T	p.Glu94Asp	p.E94D	ENST00000243786	NM_002191.3	94	gaG/gaT																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155006	55155006	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	68	409	0	ENST00000257290.5:c.2715C>A	p.Phe905Leu	p.F905L	ENST00000257290	NM_006206.4	905	ttC/ttA																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500574	149500574	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	82	492	0	ENST00000261799.4:c.2464-1G>C		p.X822_splice	ENST00000261799	NM_002609.3	822																																																																																
FLT4	2324	MSKCC	GRCh37	5	180056258	180056258	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	21	415	0	ENST00000261937.6:c.985+1G>C		p.X329_splice	ENST00000261937	NM_182925.4	329																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157528606	157528606	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	75	435	0	ENST00000346085.5:c.6331T>A	p.Phe2111Ile	p.F2111I	ENST00000346085	NM_020732.3	2111	Ttc/Atc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821539	32821539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	51	339	0	ENST00000354258.4:c.55G>A	p.Ala19Thr	p.A19T	ENST00000354258	NM_000593.5	19	Gcc/Acc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151842343	151842343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	76	474	0	ENST00000262189.6:c.14069G>A	p.Arg4690Gln	p.R4690Q	ENST00000262189	NM_170606.2	4690	cGa/cAa																																																																															
TEK	7010	MSKCC	GRCh37	9	27173331	27173331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	62	368	0	ENST00000380036.4:c.872C>T	p.Thr291Ile	p.T291I	ENST00000380036	NM_000459.3	291	aCa/aTa																																																																															
SYK	6850	MSKCC	GRCh37	9	93606255	93606257	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	47	427	0	ENST00000375746.1:c.78_80del	p.Glu26del	p.E26del	ENST00000375746	NM_001174167.1	25	gcAGAa/gca																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98215874	98215874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	64	368	0	ENST00000331920.6:c.3335A>G	p.Asn1112Ser	p.N1112S	ENST00000331920	NM_000264.3	1112	aAc/aGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0079956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	30	329	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249007	55249007	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147149347		P-0079956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	48	383	0	ENST00000275493.2:c.2305G>A	p.Val769Met	p.V769M	ENST00000275493	NM_005228.3	769	Gtg/Atg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039440	47039440	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	C			P-0079956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	24	322	0	ENST00000329236.7:c.828+4G>C		p.X276_splice	ENST00000329236	NM_001204466.1	276																																																																																
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0079959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	84	277	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0079959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	50	350	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519896		P-0079959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	67	368	0	ENST00000281708.4:c.1514G>T	p.Arg505Leu	p.R505L	ENST00000281708	NM_033632.3	505	cGc/cTc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710585	114710585	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0079959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	76	341	0	ENST00000543371.1:c.70G>T	p.Glu24Ter	p.E24*	ENST00000543371	NM_001198531.1	24	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913527		P-0079959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	83	241	0	ENST00000256078.4:c.436G>C	p.Ala146Pro	p.A146P	ENST00000256078	NM_033360.2	146	Gca/Cca																																																																															
AR	367	MSKCC	GRCh37	X	66943576	66943576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	34	304	1	ENST00000374690.3:c.2656C>A	p.His886Asn	p.H886N	ENST00000374690	NM_000044.3	886	Cac/Aac																																																																															
FLCN	201163	MSKCC	GRCh37	17	17122031	17122452	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCAAACCAATTACAGTGCTGTTCAATGCCTTTAGGAGCTTCTTAGAGGATTAGAGGACCATGGGATGCCAACTATCTGGGCTTTTCTTTGAAGATACTTAGGTCATCACTGAAAGGGGAGCACTGATCCTATGGCTAATACCCCCAACGCCCTGTGCCCTCAGCCACCCACCGAGGAGGCTGTCAGTCACTTCCTGCAGGGTTTTGAAGGTGGAGGGTCCAGAGGCAAGGCGTGTGGGCAGGGACAGCCCATGACTGGCTCTCCTCCTGAGCTCCTGATGCGCTGTGCCCCTGCCGCCTACCTGCCTCATGTGCCGGAGGGACTTGAAGACTGGCAGCTTCCGGGGCTGCCAGCTCCCACAGCCTGAGAGAGAGGAGGACTCTGCCGGGCCCTGGGTCAGCTCCCGCCCTTCTGTACTCTC	TCCAAACCAATTACAGTGCTGTTCAATGCCTTTAGGAGCTTCTTAGAGGATTAGAGGACCATGGGATGCCAACTATCTGGGCTTTTCTTTGAAGATACTTAGGTCATCACTGAAAGGGGAGCACTGATCCTATGGCTAATACCCCCAACGCCCTGTGCCCTCAGCCACCCACCGAGGAGGCTGTCAGTCACTTCCTGCAGGGTTTTGAAGGTGGAGGGTCCAGAGGCAAGGCGTGTGGGCAGGGACAGCCCATGACTGGCTCTCCTCCTGAGCTCCTGATGCGCTGTGCCCCTGCCGCCTACCTGCCTCATGTGCCGGAGGGACTTGAAGACTGGCAGCTTCCGGGGCTGCCAGCTCCCACAGCCTGAGAGAGAGGAGGACTCTGCCGGGCCCTGGGTCAGCTCCCGCCCTTCTGTACTCTC	-			P-0079959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			3	64	23	0	ENST00000285071.4:c.943_1062+302del		p.X315_splice	ENST00000285071	NM_144997.5	315																																																																																
RBM10	8241	MSKCC	GRCh37	X	47004912	47004912	+	intron_variant	Intron	SNP	G	G	A			P-0079959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	150	554	0	ENST00000329236.7:c.-126+28G>A		p.*42*	ENST00000329236	NM_001204466.1																																																																																	
RBM10	8241	MSKCC	GRCh37	X	47038548	47038548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	127	421	0	ENST00000329236.7:c.479G>A	p.Gly160Asp	p.G160D	ENST00000329236	NM_001204466.1	160	gGc/gAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434607	110434607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	23	390	0	ENST00000375856.3:c.3794C>T	p.Pro1265Leu	p.P1265L	ENST00000375856	NM_003749.2	1265	cCa/cTa																																																																															
ATM	472	MSKCC	GRCh37	11	108202225	108202225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	43	216	0	ENST00000278616.4:c.7570G>A	p.Ala2524Thr	p.A2524T	ENST00000278616	NM_000051.3	2524	Gct/Act																																																																															
APC	324	MSKCC	GRCh37	5	112170683	112170683	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	25	238	0	ENST00000257430.4:c.1779G>A	p.Trp593Ter	p.W593*	ENST00000257430	NM_000038.5	593	tgG/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0079963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	87	230	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NADK	65220	MSKCC	GRCh37	1	1687714	1687714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	29	269	0	ENST00000341426.5:c.568G>A	p.Ala190Thr	p.A190T	ENST00000341426	NM_023018.4	190	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs863223300		P-0079964-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	50	444	0	ENST00000269305.4:c.532del	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac																																																																															
USP8	9101	MSKCC	GRCh37	15	50769100	50769100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079964-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	67	315	0	ENST00000307179.4:c.904G>C	p.Glu302Gln	p.E302Q	ENST00000307179		302	Gaa/Caa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753425	42753425	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0079964-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	50	498	0	ENST00000222329.4:c.839C>A	p.Ser280Ter	p.S280*	ENST00000222329	NM_006494.2	280	tCg/tAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76855237	76855238	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0079965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			58	66	114	0	ENST00000373344.5:c.5749_5750del	p.Glu1917AsnfsTer9	p.E1917Nfs*9	ENST00000373344	NM_000489.3	1917	GAa/a																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754314	57754315	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0079965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	36	274	0	ENST00000274289.3:c.536_537del	p.Glu179AlafsTer19	p.E179Afs*19	ENST00000274289	NM_006622.3	179	gAG/g																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509091	66509091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079021-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			203	52	231	0	ENST00000273854.3:c.236C>G	p.Pro79Arg	p.P79R	ENST00000273854	NM_004439.5	79	cCa/cGa																																																																															
NBN	4683	MSKCC	GRCh37	8	90965811	90965811	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0079021-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1132	146	287	0	ENST00000265433.3:c.1506A>T	p.Lys502Asn	p.K502N	ENST00000265433	NM_002485.4	502	aaA/aaT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69103972	69103972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079021-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			716	493	314	0	ENST00000288368.4:c.4362C>A	p.Asp1454Glu	p.D1454E	ENST00000288368	NM_024870.2	1454	gaC/gaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0078403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	272	597	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907259	32907259	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	224	518	0	ENST00000380152.3:c.1644G>C	p.Gln548His	p.Q548H	ENST00000380152		548	caG/caC																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288418	15288516	+	inframe_deletion	In_Frame_Del	DEL	GGCTGTTGTTGAAGAGGCGCCAGCACTGCAGCGCCTCGCATTGCCGCCAGGGGTCGCCCACGCTCAGCGAGCAGTCGCCGCCGTCCCAGCCGCAGCCTG	GGCTGTTGTTGAAGAGGCGCCAGCACTGCAGCGCCTCGCATTGCCGCCAGGGGTCGCCCACGCTCAGCGAGCAGTCGCCGCCGTCCCAGCCGCAGCCTG	-			P-0078403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	145	443	0	ENST00000263388.2:c.4223_4321del	p.Pro1408_Ser1440del	p.P1408_S1440del	ENST00000263388	NM_000435.2	1408	cCAGGCTGCGGCTGGGACGGCGGCGACTGCTCGCTGAGCGTGGGCGACCCCTGGCGGCAATGCGAGGCGCTGCAGTGCTGGCGCCTCTTCAACAACAGCCgc/cgc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3929603	3930091	+	splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	ATCGGGTGCGGGGAGGCCGAGTGCACCGGGCGTGTGCTGACCAACTCGGGCCCAGTGACAGTCCTGCGACGAACTTCCACCCTCCCGCGCGGGGCGAGGGGAACGGGCTGCGGGGCCTGCTCCGAGCTCCCGGCTCGATCGGTATCCGCGACCACGACCCCCGGACGCTCTCTTTCAGGTGGGGGTGACAGCGCGCCCCGGGCCCCCGCCGCCCCGGACCCCCTCCTCACCTGTGCTGTCATTCGCCGAGAAACCGGGCGAGCTGAGTTTGGCTCTTTTGGGGTTGGGCGGTCCGTCCAGCAAGTTCTCAGCCATTTTCACCTGCTCGCGAAAACAGCCCCGGGCACGGGCGGCCGGGCCGGCGAGGGCCCGGACGGGGGTCGGGGGCCCTGCCGGCTGCGAGGGAGAGGAGCGAGCGCGGGCCGCGAGCGGGCGGGCGGGCGCCGAGGGAGAGGGAGGGCGCAGGCCGGGTGGGGGAGGCGGCGGCCA	ATCGGGTGCGGGGAGGCCGAGTGCACCGGGCGTGTGCTGACCAACTCGGGCCCAGTGACAGTCCTGCGACGAACTTCCACCCTCCCGCGCGGGGCGAGGGGAACGGGCTGCGGGGCCTGCTCCGAGCTCCCGGCTCGATCGGTATCCGCGACCACGACCCCCGGACGCTCTCTTTCAGGTGGGGGTGACAGCGCGCCCCGGGCCCCCGCCGCCCCGGACCCCCTCCTCACCTGTGCTGTCATTCGCCGAGAAACCGGGCGAGCTGAGTTTGGCTCTTTTGGGGTTGGGCGGTCCGTCCAGCAAGTTCTCAGCCATTTTCACCTGCTCGCGAAAACAGCCCCGGGCACGGGCGGCCGGGCCGGCGAGGGCCCGGACGGGGGTCGGGGGCCCTGCCGGCTGCGAGGGAGAGGAGCGAGCGCGGGCCGCGAGCGGGCGGGCGGGCGCCGAGGGAGAGGGAGGGCGCAGGCCGGGTGGGGGAGGCGGCGGCCA	-			P-0078403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			32	28	77	0	ENST00000262367.5:c.-174_85+230del		p.X58_splice	ENST00000262367	NM_004380.2	58																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151880057	151880057	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0078403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	172	404	0	ENST00000262189.6:c.5265+2T>C		p.X1755_splice	ENST00000262189	NM_170606.2	1755																																																																																
RUNX1	861	MSKCC	GRCh37	21	36164530	36164530	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0078403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	182	523	1	ENST00000300305.3:c.1345C>T	p.Gln449Ter	p.Q449*	ENST00000300305		449	Cag/Tag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53254070	53254070	+	start_lost	Translation_Start_Site	SNP	A	A	C			P-0078403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	208	419	0	ENST00000375401.3:c.2T>G	p.Met1?	p.M1?	ENST00000375401	NM_004187.3	1	aTg/aGg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41279556	41279567	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ATCGCCAGGATG	ATCGCCAGGATG	-			P-0078403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	448	471	0	ENST00000349496.5:c.2126_2137del	p.Arg710_Asp713del	p.R710_D713del	ENST00000349496	NM_001904.3	709	tATCGCCAGGATGat/tat																																																																															
ATM	472	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782292		P-0078646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	394	414	0	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																																																															
CCNE1	898	MSKCC	GRCh37	19	30314673	30314673	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			768	69	368	0	ENST00000262643.3:c.1222G>T	p.Glu408Ter	p.E408*	ENST00000262643	NM_001238.2	408	Gaa/Taa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993579	72993579	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769010742		P-0078900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	325	662	0	ENST00000268489.5:c.466G>A	p.Ala156Thr	p.A156T	ENST00000268489	NM_006885.3	156	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0078900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			62	332	579	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489551	56489551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1169	381	509	0	ENST00000267101.3:c.2016G>T	p.Gln672His	p.Q672H	ENST00000267101	NM_001982.3	672	caG/caT																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619044	37619044	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0078900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	447	586	0	ENST00000447079.4:c.721del	p.Ser241LeufsTer97	p.S241Lfs*97	ENST00000447079	NM_015083.1	240	gcT/gc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627162	37627180	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTGCATATTCAAGACAT	TCCTGCATATTCAAGACAT	-			P-0078900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	231	417	0	ENST00000447079.4:c.1079_1097del	p.Pro360HisfsTer70	p.P360Hfs*70	ENST00000447079	NM_015083.1	359	agTCCTGCATATTCAAGACAT/ag																																																																															
E2F3	1871	MSKCC	GRCh37	6	20483093	20483093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	270	428	0	ENST00000346618.3:c.826C>G	p.Leu276Val	p.L276V	ENST00000346618	NM_001949.4	276	Ctg/Gtg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061145	38061210	+	inframe_deletion	In_Frame_Del	DEL	TTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGGCGGCGCA	TTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGGCGGCGCA	-			P-0078952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	43	258	0	ENST00000250448.2:c.779_844del	p.Leu260_Ser282delinsCys	p.L260_S282delinsC	ENST00000250448	NM_004496.3	260	tTGCGCCGCCAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAgc/tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0079030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	421	431	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0079030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	427	368	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																															
SESN3	143686	MSKCC	GRCh37	11	94926650	94926650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	147	334	0	ENST00000536441.1:c.115G>A	p.Gly39Arg	p.G39R	ENST00000536441	NM_144665.3	39	Gga/Aga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0079030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	257	293	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056168	27056180	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGATGAGACCT	CAAGATGAGACCT	-			P-0079030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	200	394	0	ENST00000324856.7:c.1166_1178del	p.Lys389SerfsTer40	p.K389Sfs*40	ENST00000324856	NM_006015.4	388	ggCAAGATGAGACCT/gg																																																																															
PARP1	142	MSKCC	GRCh37	1	226564946	226564946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	245	459	0	ENST00000366794.5:c.1804G>A	p.Glu602Lys	p.E602K	ENST00000366794	NM_001618.3	602	Gaa/Aaa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552990	106552990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	256	581	0	ENST00000369096.4:c.955G>A	p.Glu319Lys	p.E319K	ENST00000369096	NM_001198.3	319	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0079311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	239	494	0	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71945357	71945357	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0079311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	240	494	0	ENST00000298229.2:c.2245G>T	p.Glu749Ter	p.E749*	ENST00000298229	NM_001567.3	749	Gag/Tag																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149290759	149290759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	177	372	0	ENST00000360632.3:c.460G>A	p.Asp154Asn	p.D154N	ENST00000360632	NM_015472.4	154	Gac/Aac																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514062	69514062	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	243	531	0	ENST00000294312.3:c.619G>C	p.Glu207Gln	p.E207Q	ENST00000294312	NM_005117.2	207	Gag/Cag																																																																															
RARA	5914	MSKCC	GRCh37	17	38510572	38510572	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	82	414	0	ENST00000254066.5:c.826C>G	p.Arg276Gly	p.R276G	ENST00000254066	NM_000964.3	276	Cgg/Ggg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258583	16258583	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	319	578	0	ENST00000375759.3:c.5848del	p.Arg1950GlyfsTer72	p.R1950Gfs*72	ENST00000375759	NM_015001.2	1950	Agg/gg																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690161	33690161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	188	510	0	ENST00000308377.4:c.666C>A	p.His222Gln	p.H222Q	ENST00000308377	NM_152270.3	222	caC/caA																																																																															
BBC3	27113	MSKCC	GRCh37	19	47735792	47735792	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	215	483	0	ENST00000449228.1:c.68G>C	p.Trp23Ser	p.W23S	ENST00000449228	NM_001127240.2	23	tGg/tCg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437029	110437029	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0079311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	99	521	0	ENST00000375856.3:c.1372T>G	p.Ser458Ala	p.S458A	ENST00000375856	NM_003749.2	458	Tcc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0079354-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			93	487	380	0	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602767	10602767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079354-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			114	327	382	0	ENST00000171111.5:c.811G>T	p.Val271Leu	p.V271L	ENST00000171111	NM_203500.1	271	Gtg/Ttg																																																																															
HGF	3082	MSKCC	GRCh37	7	81372752	81372752	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079354-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	121	260	0	ENST00000222390.5:c.782G>C	p.Arg261Pro	p.R261P	ENST00000222390	NM_000601.4	261	cGc/cCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0079354-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			53	1198	178	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485824	8485824	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079354-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			109	390	269	0	ENST00000356435.5:c.2993C>A	p.Thr998Lys	p.T998K	ENST00000356435		998	aCg/aAg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509558	106509558	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079354-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			263	158	288	0	ENST00000359195.3:c.1552A>T	p.Ile518Phe	p.I518F	ENST00000359195	NM_002649.2	518	Att/Ttt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166452	32166452	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079354-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	323	310	0	ENST00000375023.3:c.4591C>A	p.Pro1531Thr	p.P1531T	ENST00000375023	NM_004557.3	1531	Cct/Act																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226311	2226311	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079354-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			78	322	406	0	ENST00000398665.3:c.3791G>T	p.Ser1264Ile	p.S1264I	ENST00000398665	NM_032482.2	1264	aGc/aTc																																																																															
EP300	2033	MSKCC	GRCh37	22	41531877	41531877	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079354-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			99	239	243	0	ENST00000263253.7:c.1589A>G	p.Asp530Gly	p.D530G	ENST00000263253	NM_001429.3	530	gAc/gGc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682388	52682389	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079354-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			119	520	218	0	ENST00000394830.3:c.784dup	p.Tyr262LeufsTer2	p.Y262Lfs*2	ENST00000394830	NM_018313.4	262	tat/tTat																																																																															
FLT4	2324	MSKCC	GRCh37	5	180045779	180045779	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079354-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			67	235	296	0	ENST00000261937.6:c.2992G>T	p.Asp998Tyr	p.D998Y	ENST00000261937	NM_182925.4	998	Gac/Tac																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68331764	68331764	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079354-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			426	58	151	0	ENST00000487270.1:c.360G>T	p.Met120Ile	p.M120I	ENST00000487270	NM_133509.3	120	atG/atT																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598921	28598921	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149809618		P-0079354-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			265	179	353	0	ENST00000253063.3:c.481G>A	p.Glu161Lys	p.E161K	ENST00000253063	NM_031459.4	161	Gag/Aag																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			374	55	363	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			392	122	268	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			459	96	324	0	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			440	78	309	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			459	68	488	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088787	27088788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	52	420	0	ENST00000324856.7:c.2402dup	p.Gln802SerfsTer15	p.Q802Sfs*15	ENST00000324856	NM_006015.4	799	cag/caGg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440904	56440904	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1458799446		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			498	105	391	0	ENST00000407977.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000407977		145	Cga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1221995	1221995	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201090		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			387	54	295	0	ENST00000326873.7:c.910C>T	p.Arg304Trp	p.R304W	ENST00000326873	NM_000455.4	304	Cgg/Tgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521299	187521299	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1166479124		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			465	71	413	0	ENST00000441802.2:c.11856del	p.Phe3952LeufsTer31	p.F3952Lfs*31	ENST00000441802	NM_005245.3	3952	ttT/tt																																																																															
BCL2	596	MSKCC	GRCh37	18	60985773	60985773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1800477		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			285	55	450	0	ENST00000333681.4:c.127G>A	p.Ala43Thr	p.A43T	ENST00000333681		43	Gcc/Acc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			524	72	416	2	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			474	162	363	7	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913253	39913253	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			486	104	386	2	ENST00000378444.4:c.4862del	p.Pro1621GlnfsTer53	p.P1621Qfs*53	ENST00000378444	NM_001123385.1	1621	cCa/ca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730877	40730877	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1479203418		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			427	83	460	0	ENST00000373198.4:c.3658C>T	p.Arg1220Trp	p.R1220W	ENST00000373198	NM_133170.3	1220	Cgg/Tgg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467855	99467856	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			459	73	366	0	ENST00000268035.6:c.2732_2733dup	p.Gly912LeufsTer26	p.G912Lfs*26	ENST00000268035	NM_000875.3	908	-/TC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542110	187542110	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			487	81	433	1	ENST00000441802.2:c.5630del	p.Pro1877LeufsTer20	p.P1877Lfs*20	ENST00000441802	NM_005245.3	1877	cCt/ct																																																																															
FANCC	2176	MSKCC	GRCh37	9	97873817	97873817	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			501	55	477	0	ENST00000289081.3:c.1257del	p.Thr420ArgfsTer27	p.T420Rfs*27	ENST00000289081	NM_000136.2	419	ccC/cc																																																																															
TERT	7015	MSKCC	GRCh37	5	1279527	1279527	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767382450		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			338	57	345	0	ENST00000310581.5:c.2009C>T	p.Ala670Val	p.A670V	ENST00000310581	NM_198253.2	670	gCg/gTg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88659789	88659789	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs762900005		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			293	50	228	0	ENST00000372037.3:c.441del	p.Phe147LeufsTer18	p.F147Lfs*18	ENST00000372037	NM_004329.2	146	Ttt/tt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436128	56436128	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			486	75	474	0	ENST00000407977.2:c.1009C>T	p.Arg337Ter	p.R337*	ENST00000407977		337	Cga/Tga																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88635834	88635834	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759014147		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			312	52	220	0	ENST00000372037.3:c.59G>A	p.Arg20His	p.R20H	ENST00000372037	NM_004329.2	20	cGt/cAt																																																																															
MST1	4485	MSKCC	GRCh37	3	49722906	49722906	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			112	13	90	0	ENST00000449682.2:c.1421del	p.Pro474GlnfsTer52	p.P474Qfs*52	ENST00000449682	NM_020998.3	474	cCa/ca																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7984024	7984024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			463	85	403	0	ENST00000319144.4:c.602G>A	p.Arg201His	p.R201H	ENST00000319144	NM_001139.2	201	cGc/cAc																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346220	152346220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			478	150	386	3	ENST00000359321.1:c.350del	p.Leu117TrpfsTer17	p.L117Wfs*17	ENST00000359321	NM_005431.1	117	tTg/tg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			476	49	286	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
SMO	6608	MSKCC	GRCh37	7	128829075	128829075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1247591045		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			232	53	319	1	ENST00000249373.3:c.88del	p.Ala30ArgfsTer25	p.A30Rfs*25	ENST00000249373	NM_005631.4	28	cGg/cg																																																																															
CD274	29126	MSKCC	GRCh37	9	5457399	5457399	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs897885359		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			518	85	335	0	ENST00000381577.3:c.373C>T	p.Arg125Ter	p.R125*	ENST00000381577	NM_014143.3	125	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222730	5222731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs766222935		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			345	41	372	0	ENST00000357368.4:c.3072dup	p.Val1025ArgfsTer34	p.V1025Rfs*34	ENST00000357368	NM_002850.3	1024	-/C																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31238896	31238896	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			259	17	197	0	ENST00000376228.5:c.573G>A	p.Trp191Ter	p.W191*	ENST00000376228	NM_002117.5	191	tgG/tgA																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9778839	9778839	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			532	94	464	0	ENST00000377346.4:c.1108del	p.Val370CysfsTer28	p.V370Cfs*28	ENST00000377346	NM_005026.3	370	Gtg/tg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628185	187628185	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767176687		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			498	102	374	0	ENST00000441802.2:c.2797C>T	p.Arg933Cys	p.R933C	ENST00000441802	NM_005245.3	933	Cgt/Tgt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430327	181430327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			258	41	272	0	ENST00000325404.1:c.179C>T	p.Ala60Val	p.A60V	ENST00000325404	NM_003106.3	60	gCc/gTc																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194823	29194823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			428	81	457	2	ENST00000240100.2:c.905G>A	p.Arg302Lys	p.R302K	ENST00000240100	NM_001394.6	302	aGg/aAg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662461	227662461	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1172214075		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			446	82	507	0	ENST00000305123.5:c.994G>A	p.Gly332Ser	p.G332S	ENST00000305123	NM_005544.2	332	Ggc/Agc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260136	19260136	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142232568		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			426	96	387	0	ENST00000162023.5:c.157C>T	p.Arg53Cys	p.R53C	ENST00000162023		53	Cgc/Tgc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141542163	141542163	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1324425100		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			467	66	312	0	ENST00000220592.5:c.2560C>T	p.Arg854Cys	p.R854C	ENST00000220592	NM_012154.3	854	Cgc/Tgc																																																																															
CASP8	841	MSKCC	GRCh37	2	202141587	202141587	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			507	76	394	0	ENST00000358485.4:c.878del	p.Gly293AspfsTer4	p.G293Dfs*4	ENST00000358485	NM_001080125.1	292	cGg/cg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464554	25464554	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs747168987		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			417	63	410	0	ENST00000264709.3:c.1959G>T	p.Leu653Phe	p.L653F	ENST00000264709	NM_175629.2	653	ttG/ttT																																																																															
SOS1	6654	MSKCC	GRCh37	2	39249789	39249789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	62	268	1	ENST00000402219.2:c.1780C>T	p.Pro594Ser	p.P594S	ENST00000402219	NM_005633.3	594	Ccc/Tcc																																																																															
ERG	2078	MSKCC	GRCh37	21	39755717	39755717	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1333152977		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			466	64	394	0	ENST00000288319.7:c.1048C>T	p.Arg350Cys	p.R350C	ENST00000288319	NM_182918.3	350	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5246050	5246050	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1448131962		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	87	266	0	ENST00000357368.4:c.725G>A	p.Arg242His	p.R242H	ENST00000357368	NM_002850.3	242	cGc/cAc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445208	29445209	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			465	82	452	0	ENST00000544604.2:c.1046_1047del	p.Val349GlyfsTer117	p.V349Gfs*117	ENST00000544604	NM_001206998.1	347	GTg/g																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	77	337	1	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
TERT	7015	MSKCC	GRCh37	5	1296422	1296422	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs116210138		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			195	31	151	0				ENST00000310581	NM_198253.2																																																																																	
ETAA1	54465	MSKCC	GRCh37	2	67630356	67630356	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			314	45	258	0	ENST00000272342.5:c.543-1G>T		p.X181_splice	ENST00000272342	NM_019002.3	181																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44732909	44732910	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			291	46	344	0	ENST00000377967.4:c.117dup	p.Ser40GlnfsTer25	p.S40Qfs*25	ENST00000377967	NM_021140.2	38	tcc/tCcc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907099	32907099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			367	115	351	0	ENST00000380152.3:c.1484C>A	p.Ala495Asp	p.A495D	ENST00000380152		495	gCt/gAt																																																																															
ARAF	369	MSKCC	GRCh37	X	47428167	47428167	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1320336824		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			432	61	392	0	ENST00000377045.4:c.1127C>T	p.Pro376Leu	p.P376L	ENST00000377045	NM_001654.4	376	cCg/cTg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665092	138665092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			240	25	305	0	ENST00000330315.3:c.473C>T	p.Ala158Val	p.A158V	ENST00000330315	NM_023067.3	158	gCg/gTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69027990	69027990	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			345	40	279	0	ENST00000288368.4:c.3149T>C	p.Leu1050Pro	p.L1050P	ENST00000288368	NM_024870.2	1050	cTt/cCt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458535	120458535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			487	76	497	0	ENST00000256646.2:c.6810G>A	p.Met2270Ile	p.M2270I	ENST00000256646	NM_024408.3	2270	atG/atA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441756	49441756	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			431	94	314	0	ENST00000301067.7:c.4228A>G	p.Asn1410Asp	p.N1410D	ENST00000301067	NM_003482.3	1410	Aac/Gac																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770078	56770078	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			458	75	351	0	ENST00000337432.4:c.74T>C	p.Val25Ala	p.V25A	ENST00000337432	NM_058216.2	25	gTg/gCg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099190	157099190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			387	45	390	0	ENST00000346085.5:c.127G>A	p.Ala43Thr	p.A43T	ENST00000346085	NM_020732.3	43	Gcg/Acg																																																																															
SMO	6608	MSKCC	GRCh37	7	128846203	128846203	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			558	91	494	0	ENST00000249373.3:c.1133T>C	p.Val378Ala	p.V378A	ENST00000249373	NM_005631.4	378	gTg/gCg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001013	150001013	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	48	273	0	ENST00000253339.5:c.2591G>T	p.Ser864Ile	p.S864I	ENST00000253339		864	aGt/aTt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272003	15272003	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1305051398		P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	91	473	0	ENST00000263388.2:c.6436G>A	p.Ala2146Thr	p.A2146T	ENST00000263388	NM_000435.2	2146	Gcg/Acg																																																																															
HGF	3082	MSKCC	GRCh37	7	81335606	81335606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			358	54	292	0	ENST00000222390.5:c.1754C>T	p.Ala585Val	p.A585V	ENST00000222390	NM_000601.4	585	gCc/gTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831713	72831713	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			471	56	403	1	ENST00000268489.5:c.4868A>C	p.Lys1623Thr	p.K1623T	ENST00000268489	NM_006885.3	1623	aAg/aCg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961002	15961002	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			431	79	306	0	ENST00000268712.3:c.6218C>A	p.Pro2073His	p.P2073H	ENST00000268712	NM_006311.3	2073	cCc/cAc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23634431	23634431	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			453	87	313	0	ENST00000261584.4:c.2855A>G	p.Asp952Gly	p.D952G	ENST00000261584	NM_024675.3	952	gAt/gGt																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119634895	119634895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079510-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			422	68	338	0	ENST00000316626.5:c.604G>A	p.Gly202Arg	p.G202R	ENST00000316626		202	Gga/Aga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0079511-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			429	377	516	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72866395	72866395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079511-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			379	27	473	0	ENST00000325599.8:c.868G>A	p.Glu290Lys	p.E290K	ENST00000325599	NM_018130.2	290	Gaa/Aaa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55146592	55146592	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079511-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			468	107	458	0	ENST00000257290.5:c.2266G>C	p.Asp756His	p.D756H	ENST00000257290	NM_006206.4	756	Gac/Cac																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715589	30715609	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCTATAGGTGGGAACTGCAA	TGCTATAGGTGGGAACTGCAA	-			P-0079511-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			194	178	479	0	ENST00000359013.4:c.1330-8_1342del		p.X444_splice	ENST00000359013	NM_001024847.2	444																																																																																
FH	2271	MSKCC	GRCh37	1	241682962	241682962	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079511-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			414	110	539	0	ENST00000366560.3:c.61del	p.Ala21ProfsTer2	p.A21Pfs*2	ENST00000366560	NM_000143.3	21	Gcc/cc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138433528	138433528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079511-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			326	176	484	0	ENST00000289153.2:c.1084G>A	p.Glu362Lys	p.E362K	ENST00000289153	NM_006219.2	362	Gag/Aag																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156841480	156841480	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079511-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			528	148	744	0	ENST00000524377.1:c.783G>C	p.Lys261Asn	p.K261N	ENST00000524377	NM_002529.3	261	aaG/aaC																																																																															
MET	4233	MSKCC	GRCh37	7	116340167	116340167	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079511-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			758	79	507	0	ENST00000397752.3:c.1029C>A	p.Phe343Leu	p.F343L	ENST00000397752	NM_000245.2	343	ttC/ttA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0079671-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			701	27	369	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879794	37879794	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	220	823	0	ENST00000269571.5:c.2089G>C	p.Val697Leu	p.V697L	ENST00000269571		697	Gtg/Ctg																																																																															
TET2	54790	MSKCC	GRCh37	4	106156935	106156936	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs890697014		P-0079739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	289	669	0	ENST00000380013.4:c.1842dup	p.Leu615AlafsTer23	p.L615Afs*23	ENST00000380013	NM_001127208.2	612	-/G																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24135828	24135828	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	33	506	0	ENST00000263121.7:c.315G>C	p.Glu105Asp	p.E105D	ENST00000263121	NM_003073.3	105	gaG/gaC																																																																															
MED12	9968	MSKCC	GRCh37	X	70348990	70348990	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	146	509	0	ENST00000374080.3:c.3502G>C	p.Gly1168Arg	p.G1168R	ENST00000374080		1168	Ggg/Cgg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912386	50912386	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	105	472	0	ENST00000440232.2:c.1900G>C	p.Glu634Gln	p.E634Q	ENST00000440232	NM_002691.3	634	Gag/Cag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949339	71949339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	133	610	0	ENST00000298229.2:c.3719G>T	p.Gly1240Val	p.G1240V	ENST00000298229	NM_001567.3	1240	gGg/gTg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665540	138665540	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0079739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	24	375	0	ENST00000330315.3:c.25G>T	p.Glu9Ter	p.E9*	ENST00000330315	NM_023067.3	9	Gag/Tag																																																																															
FLT1	2321	MSKCC	GRCh37	13	28903763	28903763	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	156	449	0	ENST00000282397.4:c.2696C>A	p.Thr899Asn	p.T899N	ENST00000282397	NM_002019.4	899	aCc/aAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151947026	151947026	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0079739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	87	374	0	ENST00000262189.6:c.1748A>T	p.His583Leu	p.H583L	ENST00000262189	NM_170606.2	583	cAc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs1057517840		P-0079769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	92	650	1	ENST00000269305.4:c.626_627del	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0079769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	136	556	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0079769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	89	662	2	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0079769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	61	548	2	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374929	45374929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	88	524	0	ENST00000262160.6:c.914C>T	p.Pro305Leu	p.P305L	ENST00000262160	NM_005901.5	305	cCa/cTa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619427	1619427	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201296678		P-0079769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	170	616	7	ENST00000344749.5:c.1214G>A	p.Arg405His	p.R405H	ENST00000344749	NM_001136139.2	405	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0079769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	33	347	0	ENST00000256078.4:c.34_35delinsCT	p.Gly12Leu	p.G12L	ENST00000256078	NM_033360.2	12	GGt/CTt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129372	2129372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	142	624	2	ENST00000219476.3:c.3227G>A	p.Gly1076Glu	p.G1076E	ENST00000219476	NM_000548.3	1076	gGg/gAg																																																																															
ACVR1	90	MSKCC	GRCh37	2	158622493	158622493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	63	416	0	ENST00000263640.3:c.1006G>A	p.Asp336Asn	p.D336N	ENST00000263640	NM_001105.4	336	Gat/Aat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910894	32910894	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	63	553	1	ENST00000380152.3:c.2402A>G	p.Asn801Ser	p.N801S	ENST00000380152		801	aAc/aGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0079770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	347	427	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0079770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	121	561	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123205174	123205174	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0079770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	51	189	0	ENST00000218089.9:c.2533+1G>T		p.X845_splice	ENST00000218089	NM_001042749.1	845																																																																																
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0079771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	39	378	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			783	47	489	0	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442054	52442054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	81	396	0	ENST00000460680.1:c.295G>A	p.Val99Met	p.V99M	ENST00000460680	NM_004656.3	99	Gtg/Atg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220434	1220434	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	40	467	0	ENST00000326873.7:c.527A>T	p.Asp176Val	p.D176V	ENST00000326873	NM_000455.4	176	gAc/gTc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41223227	41223227	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	48	427	0	ENST00000357654.3:c.4704C>G	p.Ile1568Met	p.I1568M	ENST00000357654	NM_007294.3	1568	atC/atG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0079772-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	105	307	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472561	88472561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079772-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	67	578	0	ENST00000360948.2:c.1994C>T	p.Ser665Leu	p.S665L	ENST00000360948	NM_001012338.2	665	tCg/tTg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11032302	11032302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079772-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	75	537	0	ENST00000327064.4:c.1696G>A	p.Ala566Thr	p.A566T	ENST00000327064	NM_199141.1	566	Gcc/Acc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250883	153250883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079772-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	70	352	1	ENST00000281708.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000281708	NM_033632.3	393	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175430	112175430	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079772-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	80	512	0	ENST00000257430.4:c.4142del	p.Pro1381HisfsTer34	p.P1381Hfs*34	ENST00000257430	NM_000038.5	1380	aCc/ac																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0079772-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	62	532	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108198392	108198393	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACATACACAGA			P-0079772-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	61	451	0	ENST00000278616.4:c.6998_7008dup	p.Cys2337HisfsTer6	p.C2337Hfs*6	ENST00000278616	NM_000051.3	2332	-/ACATACACAGA																																																																															
ATM	472	MSKCC	GRCh37	11	108205734	108205735	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0079772-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	75	414	0	ENST00000278616.4:c.8050_8051del	p.Gln2684ValfsTer3	p.Q2684Vfs*3	ENST00000278616	NM_000051.3	2683	atACag/atag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967815	18967815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079772-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	107	463	0	ENST00000262803.5:c.1954C>T	p.Leu652Phe	p.L652F	ENST00000262803	NM_002911.3	652	Ctc/Ttc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630507	47630507	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079772-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	79	513	0	ENST00000233146.2:c.177G>C	p.Lys59Asn	p.K59N	ENST00000233146	NM_000251.2	59	aaG/aaC																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061226	38061237	+	inframe_deletion	In_Frame_Del	DEL	CGAACATGTTGC	CGAACATGTTGC	-			P-0079776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	130	531	0	ENST00000250448.2:c.752_763del	p.Gly251_Phe254del	p.G251_F254del	ENST00000250448	NM_004496.3	251	gGCAACATGTTCGag/gag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993508	72993509	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0079776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	68	599	0	ENST00000268489.5:c.536dup	p.Lys180GlnfsTer30	p.K180Qfs*30	ENST00000268489	NM_006885.3	179	ggc/ggGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0079778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	222	392	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	316	485	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178169	56178170	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	260	484	0	ENST00000399503.3:c.3143dup	p.Ser1049ValfsTer8	p.S1049Vfs*8	ENST00000399503	NM_005921.1	1048	cag/cAag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56171014	56171014	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	282	487	0	ENST00000399503.3:c.1842del	p.Ser615ValfsTer41	p.S615Vfs*41	ENST00000399503	NM_005921.1	614	ccG/cc																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61324199	61324199	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0079778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	285	485	0	ENST00000283752.5:c.634A>T	p.Met212Leu	p.M212L	ENST00000283752	NM_006919.2	212	Atg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0079779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	214	643	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517201		P-0079779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	43	255	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275777	38275777	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs923019674		P-0079779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	49	507	0	ENST00000425967.3:c.1492G>A	p.Glu498Lys	p.E498K	ENST00000425967	NM_001174067.1	498	Gaa/Aaa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563054	21563054	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	84	618	0	ENST00000382592.4:c.865C>A	p.Leu289Met	p.L289M	ENST00000382592	NM_014572.2	289	Ctg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0079802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	337	374	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934574		P-0079802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	432	452	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662185	227662185	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs768932529		P-0079802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	148	504	0	ENST00000305123.5:c.1270G>T	p.Gly424Cys	p.G424C	ENST00000305123	NM_005544.2	424	Ggt/Tgt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412115	63412115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	146	215	0	ENST00000330258.3:c.1052C>A	p.Ala351Glu	p.A351E	ENST00000330258	NM_152424.3	351	gCa/gAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0079816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	85	190	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0079816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	271	391	2	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
LYN	4067	MSKCC	GRCh37	8	56864528	56864528	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			737	101	289	0	ENST00000519728.1:c.491G>T	p.Ser164Ile	p.S164I	ENST00000519728	NM_002350.3	164	aGc/aTc																																																																															
KLF5	688	MSKCC	GRCh37	13	73636368	73636368	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	167	402	0	ENST00000377687.4:c.631G>C	p.Glu211Gln	p.E211Q	ENST00000377687	NM_001730.3	211	Gaa/Caa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189491	56189491	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	344	313	0	ENST00000399503.3:c.4523T>C	p.Phe1508Ser	p.F1508S	ENST00000399503	NM_005921.1	1508	tTt/tCt																																																																															
KLF5	688	MSKCC	GRCh37	13	73636383	73636383	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	158	393	0	ENST00000377687.4:c.646G>C	p.Asp216His	p.D216H	ENST00000377687	NM_001730.3	216	Gat/Cat																																																																															
KLF5	688	MSKCC	GRCh37	13	73636449	73636449	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	164	383	0	ENST00000377687.4:c.712G>C	p.Asp238His	p.D238H	ENST00000377687	NM_001730.3	238	Gat/Cat																																																																															
KLF5	688	MSKCC	GRCh37	13	73636472	73636472	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	175	403	0	ENST00000377687.4:c.735G>C	p.Gln245His	p.Q245H	ENST00000377687	NM_001730.3	245	caG/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0079817-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1098	94	585	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0079817-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	53	351	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs483352822		P-0079822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	44	433	0	ENST00000368323.3:c.270G>C	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atC																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266822	198266822	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0079822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	27	380	0	ENST00000335508.6:c.2110A>T	p.Ile704Phe	p.I704F	ENST00000335508	NM_012433.2	704	Atc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579585	7579585	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	316	436	0	ENST00000269305.4:c.102del	p.Leu35CysfsTer9	p.L35Cfs*9	ENST00000269305	NM_001126112.2	34	ccC/cc																																																																															
RARA	5914	MSKCC	GRCh37	17	38512371	38512371	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1449127199		P-0079844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	99	271	0	ENST00000254066.5:c.1282G>T	p.Gly428Trp	p.G428W	ENST00000254066	NM_000964.3	428	Ggg/Tgg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004918	150004918	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0079844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	197	507	1	ENST00000253339.5:c.1307C>A	p.Ser436Ter	p.S436*	ENST00000253339		436	tCa/tAa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2207671	2207671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	171	393	0	ENST00000398665.3:c.955C>T	p.Arg319Cys	p.R319C	ENST00000398665	NM_032482.2	319	Cgc/Tgc																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61322973	61322973	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	123	394	0	ENST00000283752.5:c.1091A>G	p.His364Arg	p.H364R	ENST00000283752	NM_006919.2	364	cAt/cGt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25468912	25468912	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	135	370	0	ENST00000264709.3:c.1451G>C	p.Arg484Pro	p.R484P	ENST00000264709	NM_175629.2	484	cGg/cCg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542422	187542422	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	183	483	0	ENST00000441802.2:c.5318T>A	p.Leu1773His	p.L1773H	ENST00000441802	NM_005245.3	1773	cTc/cAc																																																																															
AR	367	MSKCC	GRCh37	X	66905918	66905918	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	128	163	0	ENST00000374690.3:c.1835G>T	p.Cys612Phe	p.C612F	ENST00000374690	NM_000044.3	612	tGt/tTt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502109	157502109	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	323	427	0	ENST00000346085.5:c.3142A>G	p.Ser1048Gly	p.S1048G	ENST00000346085	NM_020732.3	1048	Agc/Ggc																																																																															
PHF6	84295	MSKCC	GRCh37	X	133559292	133559292	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	122	204	0	ENST00000332070.3:c.1030A>T	p.Ser344Cys	p.S344C	ENST00000332070	NM_032458.2	344	Agt/Tgt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115729	8115729	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0079846-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	273	327	0	ENST00000346208.3:c.1075G>T	p.Glu359Ter	p.E359*	ENST00000346208		359	Gaa/Taa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942153	81942153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079846-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	111	343	0	ENST00000359376.3:c.1690C>T	p.Arg564Trp	p.R564W	ENST00000359376	NM_002661.3	564	Cgg/Tgg																																																																															
RET	5979	MSKCC	GRCh37	10	43600450	43600450	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1455266037		P-0079846-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			775	167	354	0	ENST00000355710.3:c.676C>T	p.Arg226Cys	p.R226C	ENST00000355710	NM_020975.4	226	Cgc/Tgc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115718	8115718	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1485416728		P-0079846-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	253	294	1	ENST00000346208.3:c.1064C>T	p.Thr355Ile	p.T355I	ENST00000346208		355	aCt/aTt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524576	176524576	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079846-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1092	164	447	0	ENST00000292408.4:c.2308G>T	p.Asp770Tyr	p.D770Y	ENST00000292408	NM_213647.1	770	Gac/Tac																																																																															
JAK1	3716	MSKCC	GRCh37	1	65304152	65304152	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079846-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	41	249	0	ENST00000342505.4:c.2963G>T	p.Cys988Phe	p.C988F	ENST00000342505	NM_002227.2	988	tGt/tTt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391907	139391907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079846-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	169	451	0	ENST00000277541.6:c.6284G>T	p.Arg2095Leu	p.R2095L	ENST00000277541	NM_017617.3	2095	cGc/cTc																																																																															
CBFB	865	MSKCC	GRCh37	16	67063628	67063631	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGAT	AGAT	GGA			P-0079846-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	273	282	0	ENST00000412916.2:c.79-2_80delinsGGA		p.X27_splice	ENST00000412916		27																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0079848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	411	317	0				ENST00000310581	NM_198253.2																																																																																	
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0079848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	325	244	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101681	27101681	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	528	464	0	ENST00000324856.7:c.4963C>T	p.Gln1655Ter	p.Q1655*	ENST00000324856	NM_006015.4	1655	Cag/Tag																																																																															
KLF5	688	MSKCC	GRCh37	13	73649902	73649902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	284	353	0	ENST00000377687.4:c.1252G>A	p.Asp418Asn	p.D418N	ENST00000377687	NM_001730.3	418	Gat/Aat																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821467	32821467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			840	178	387	0	ENST00000354258.4:c.127C>T	p.Arg43Trp	p.R43W	ENST00000354258	NM_000593.5	43	Cgg/Tgg																																																																															
NF2	4771	MSKCC	GRCh37	22	30000025	30000025	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	30	301	0	ENST00000338641.4:c.38C>G	p.Ser13Cys	p.S13C	ENST00000338641	NM_000268.3	13	tCt/tGt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299844	15299844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	285	465	0	ENST00000263388.2:c.1334C>T	p.Thr445Met	p.T445M	ENST00000263388	NM_000435.2	445	aCg/aTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288925	212288925	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	29	315	0	ENST00000342788.4:c.2821C>T	p.Gln941Ter	p.Q941*	ENST00000342788	NM_005235.2	941	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0079861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	24	192	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C	rs886039483		P-0079861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	37	343	0	ENST00000269305.4:c.376T>G	p.Tyr126Asp	p.Y126D	ENST00000269305	NM_001126112.2	126	Tac/Gac																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191251	185191251	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			802	46	348	0	ENST00000265026.3:c.2132C>G	p.Ser711Cys	p.S711C	ENST00000265026	NM_004721.4	711	tCt/tGt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149504319	149504319	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	169	391	0	ENST00000261799.4:c.1883C>G	p.Thr628Arg	p.T628R	ENST00000261799	NM_002609.3	628	aCg/aGg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540124	187540124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	244	464	0	ENST00000441802.2:c.7616G>C	p.Arg2539Thr	p.R2539T	ENST00000441802	NM_005245.3	2539	aGa/aCa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572641	64572647	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGAGG	CTGGAGG	-			P-0079864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	331	624	0	ENST00000337652.1:c.1224_1230del	p.Leu409ThrfsTer39	p.L409Tfs*39	ENST00000337652	NM_130803.2	408	gcCCTCCAG/gc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288246	33288246	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0079864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	240	532	0	ENST00000374542.5:c.1162G>T	p.Glu388Ter	p.E388*	ENST00000374542	NM_001141970.1	388	Gag/Tag																																																																															
PARP1	142	MSKCC	GRCh37	1	226570833	226570833	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753458085		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	195	380	0	ENST00000366794.5:c.1063C>T	p.Arg355Cys	p.R355C	ENST00000366794	NM_001618.3	355	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100073	27100073	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs764041562		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	239	464	0	ENST00000324856.7:c.3869C>T	p.Thr1290Met	p.T1290M	ENST00000324856	NM_006015.4	1290	aCg/aTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	233	384	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	325	287	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118391551	118391551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	38	302	0	ENST00000534358.1:c.11464C>T	p.Arg3822Cys	p.R3822C	ENST00000534358	NM_005933.3	3822	Cgc/Tgc																																																																															
CBL	867	MSKCC	GRCh37	11	119149230	119149230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	182	358	0	ENST00000264033.4:c.1238G>A	p.Gly413Asp	p.G413D	ENST00000264033	NM_005188.3	413	gGt/gAt																																																																															
CBL	867	MSKCC	GRCh37	11	119156010	119156010	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs779425249		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	278	490	0	ENST00000264033.4:c.1675C>T	p.Arg559Ter	p.R559*	ENST00000264033	NM_005188.3	559	Cga/Tga																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038909	12038909	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	273	327	0	ENST00000396373.4:c.1202A>G	p.Tyr401Cys	p.Y401C	ENST00000396373	NM_001987.4	401	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	123	260	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	420184	420184	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs546854883		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	236	336	1	ENST00000399788.2:c.3083C>T	p.Ala1028Val	p.A1028V	ENST00000399788	NM_001042603.1	1028	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433394	49433394	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs587783727		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	169	402	1	ENST00000301067.7:c.8053C>T	p.Arg2685Ter	p.R2685*	ENST00000301067	NM_003482.3	2685	Cga/Tga																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66782074	66782075	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	163	331	0	ENST00000307102.5:c.1047_1048del	p.Arg349SerfsTer16	p.R349Sfs*16	ENST00000307102	NM_002755.3	347	gcAGag/gcag																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	215	450	5	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2107113	2107113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45502703		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	164	352	0	ENST00000219476.3:c.782G>A	p.Arg261Gln	p.R261Q	ENST00000219476	NM_000548.3	261	cGg/cAg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639155	3639155	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777033175		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	204	456	1	ENST00000294008.3:c.4484C>T	p.Ala1495Val	p.A1495V	ENST00000294008	NM_032444.2	1495	gCg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788672	3788672	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1387351570		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	158	245	0	ENST00000262367.5:c.4282C>T	p.Arg1428Cys	p.R1428C	ENST00000262367	NM_004380.2	1428	Cgt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821404	72821404	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755852557		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	34	384	0	ENST00000268489.5:c.10771G>A	p.Ala3591Thr	p.A3591T	ENST00000268489	NM_006885.3	3591	Gct/Act																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991713	72991715	+	inframe_deletion	In_Frame_Del	DEL	CCA	CCA	-	rs768134461		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	287	416	9	ENST00000268489.5:c.2330_2332del	p.Val777del	p.V777del	ENST00000268489	NM_006885.3	777	gTGGct/gct																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246532	41246532	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs80357618		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	199	410	2	ENST00000357654.3:c.1016del	p.Lys339ArgfsTer2	p.K339Rfs*2	ENST00000357654	NM_007294.3	339	aAg/ag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	457	500	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436128	56436128	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	216	456	0	ENST00000407977.2:c.1009C>T	p.Arg337Ter	p.R337*	ENST00000407977		337	Cga/Tga																																																																															
CD79B	974	MSKCC	GRCh37	17	62006603	62006603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	175	396	2	ENST00000392795.3:c.676C>T	p.His226Tyr	p.H226Y	ENST00000392795	NM_001039933.1	226	Cac/Tac																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66525038	66525038	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1329426125		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	187	328	0	ENST00000358598.2:c.797C>T	p.Thr266Met	p.T266M	ENST00000358598	NM_212471.2	266	aCg/aTg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78820340	78820340	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1284870590		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	31	391	0	ENST00000306801.3:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000306801	NM_020761.2	427	cGa/cAa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296358	15296358	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	209	482	1	ENST00000263388.2:c.2084del	p.Pro695ArgfsTer165	p.P695Rfs*165	ENST00000263388	NM_000435.2	695	cCg/cg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19258640	19258640	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs533071900		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	155	414	0	ENST00000162023.5:c.260C>T	p.Thr87Met	p.T87M	ENST00000162023		87	aCg/aTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2206739	2206739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	253	322	0	ENST00000398665.3:c.799G>A	p.Val267Met	p.V267M	ENST00000398665	NM_032482.2	267	Gtg/Atg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30311679	30311679	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372635299		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	151	295	0	ENST00000262643.3:c.533C>T	p.Ala178Val	p.A178V	ENST00000262643	NM_001238.2	178	gCg/gTg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868134	45868134	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143960980		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	164	389	1	ENST00000391945.4:c.556C>T	p.Arg186Cys	p.R186C	ENST00000391945	NM_000400.3	186	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222906	5222906	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs915133073		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	144	397	1	ENST00000357368.4:c.2897C>T	p.Thr966Met	p.T966M	ENST00000357368	NM_002850.3	966	aCg/aTg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607459	46607459	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771840848		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	222	401	0	ENST00000263734.3:c.1648C>T	p.Arg550Trp	p.R550W	ENST00000263734	NM_001430.4	550	Cgg/Tgg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630472	47630472	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs63750615		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	156	391	0	ENST00000233146.2:c.142G>T	p.Glu48Ter	p.E48*	ENST00000233146	NM_000251.2	48	Gag/Tag																																																																															
MSH2	4436	MSKCC	GRCh37	2	47690182	47690182	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	181	331	0	ENST00000233146.2:c.1399G>T	p.Glu467Ter	p.E467*	ENST00000233146	NM_000251.2	467	Gaa/Taa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026203	48026203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782651		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	226	405	0	ENST00000234420.5:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000234420	NM_000179.2	361	Cgc/Tgc																																																																															
REL	5966	MSKCC	GRCh37	2	61147744	61147744	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749138316		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	260	504	0	ENST00000295025.8:c.1054G>A	p.Gly352Ser	p.G352S	ENST00000295025	NM_002908.2	352	Ggt/Agt																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45657044	45657044	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768853378		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	201	396	0	ENST00000407780.3:c.112G>A	p.Ala38Thr	p.A38T	ENST00000407780	NM_001283052.1	38	Gct/Act																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279846	29279846	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			75	56	119	0	ENST00000544604.2:c.92del	p.Leu31ArgfsTer91	p.L31Rfs*91	ENST00000544604	NM_001206998.1	31	cTg/cg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204581	128204581	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1004873472		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	134	376	0	ENST00000341105.2:c.860G>A	p.Arg287His	p.R287H	ENST00000341105	NM_032638.4	287	cGt/cAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713544	30713546	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	211	432	0	ENST00000359013.4:c.946_948del	p.Lys316del	p.K316del	ENST00000359013	NM_001024847.2	315	gAGAag/gag																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441189	52441189	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	177	427	0	ENST00000460680.1:c.580+1G>A		p.X194_splice	ENST00000460680	NM_004656.3	194																																																																																
INPP4B	8821	MSKCC	GRCh37	4	143043366	143043366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199940140		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	151	293	0	ENST00000262992.4:c.2050G>A	p.Val684Ile	p.V684I	ENST00000262992	NM_001101669.1	684	Gtt/Att																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747937	41747937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	96	310	0	ENST00000226382.2:c.832G>T	p.Gly278Cys	p.G278C	ENST00000226382	NM_003924.3	278	Ggc/Tgc																																																																															
KDR	3791	MSKCC	GRCh37	4	55955112	55955112	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776671822		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	160	319	2	ENST00000263923.4:c.3433G>A	p.Gly1145Arg	p.G1145R	ENST00000263923	NM_002253.2	1145	Ggg/Agg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459633	149459633	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767113303		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	218	422	0	ENST00000286301.3:c.574C>T	p.Arg192Trp	p.R192W	ENST00000286301	NM_005211.3	192	Cgg/Tgg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176696632	176696632	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765594077		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	227	332	0	ENST00000439151.2:c.5333G>A	p.Arg1778Gln	p.R1778Q	ENST00000439151	NM_022455.4	1778	cGa/cAa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	307	324	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190389	32190390	+	missense_variant	Missense_Mutation	DNP	TT	TT	CG			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	301	486	0	ENST00000375023.3:c.349_350delinsCG	p.Lys117Arg	p.K117R	ENST00000375023	NM_004557.3	117	AAg/CGg																																																																															
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	235	508	0	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468296	50468296	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	212	345	0	ENST00000331340.3:c.1531C>T	p.Arg511Ter	p.R511*	ENST00000331340	NM_006060.4	511	Cga/Tga																																																																															
AGO2	27161	MSKCC	GRCh37	8	141566347	141566347	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	367	363	0	ENST00000220592.5:c.1065del	p.Lys355AsnfsTer2	p.K355Nfs*2	ENST00000220592	NM_012154.3	355	aaA/aa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739012	145739012	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373292946		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	445	476	0	ENST00000428558.2:c.2143C>T	p.Arg715Trp	p.R715W	ENST00000428558	NM_004260.3	715	Cgg/Tgg																																																																															
ABL1	25	MSKCC	GRCh37	9	133760960	133760960	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750196179		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	168	373	0	ENST00000318560.5:c.3283C>T	p.Arg1095Trp	p.R1095W	ENST00000318560	NM_005157.4	1095	Cgg/Tgg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209504	98209504	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766315655		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	158	401	0	ENST00000331920.6:c.4034G>A	p.Arg1345His	p.R1345H	ENST00000331920	NM_000264.3	1345	cGt/cAt																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152864501	152864501	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			35	64	120	0	ENST00000406277.2:c.27del	p.Pro10LeufsTer30	p.P10Lfs*30	ENST00000406277	NM_152274.4	9	ggG/gg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11316228	11316228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	172	368	0	ENST00000361445.4:c.526G>A	p.Ala176Thr	p.A176T	ENST00000361445	NM_004958.3	176	Gcc/Acc																																																																															
GNB1	2782	MSKCC	GRCh37	1	1720594	1720594	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1356733529		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	214	378	0	ENST00000378609.4:c.814G>A	p.Gly272Arg	p.G272R	ENST00000378609	NM_002074.3	272	Ggg/Agg																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125503112	125503112	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778046191		P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	180	336	0	ENST00000428830.2:c.479G>A	p.Arg160His	p.R160H	ENST00000428830	NM_001114121.2	160	cGt/cAt																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47599128	47599128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	233	437	0	ENST00000395288.2:c.424G>A	p.Val142Met	p.V142M	ENST00000395288	NM_016506.5	142	Gtg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435157	49435157	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	136	397	0	ENST00000301067.7:c.6396del	p.Ala2133ProfsTer11	p.A2133Pfs*11	ENST00000301067	NM_003482.3	2132	ccC/cc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21350271	21350271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	181	394	0	ENST00000215739.8:c.2089C>T	p.Arg697Trp	p.R697W	ENST00000215739	NM_006767.3	697	Cgg/Tgg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12641780	12641780	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			740	67	488	0	ENST00000251849.4:c.863-2A>C		p.X288_splice	ENST00000251849	NM_002880.3	288																																																																																
ATR	545	MSKCC	GRCh37	3	142177834	142177834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	157	296	0	ENST00000350721.4:c.7469G>A	p.Cys2490Tyr	p.C2490Y	ENST00000350721	NM_001184.3	2490	tGc/tAc																																																																															
ATR	545	MSKCC	GRCh37	3	142232344	142232344	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	167	340	0	ENST00000350721.4:c.4640A>G	p.Glu1547Gly	p.E1547G	ENST00000350721	NM_001184.3	1547	gAg/gGg																																																																															
MST1	4485	MSKCC	GRCh37	3	49723591	49723591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			59	28	53	0	ENST00000449682.2:c.1051G>A	p.Gly351Ser	p.G351S	ENST00000449682	NM_020998.3	351	Ggc/Agc																																																																															
MST1	4485	MSKCC	GRCh37	3	49725249	49725249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			22	10	20	0	ENST00000449682.2:c.176C>T	p.Pro59Leu	p.P59L	ENST00000449682	NM_020998.3	59	cCt/cTt																																																																															
GAB1	2549	MSKCC	GRCh37	4	144336799	144336799	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	176	357	0	ENST00000262994.4:c.242A>C	p.Asn81Thr	p.N81T	ENST00000262994	NM_002039.3	81	aAc/aCc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945096	151945096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	33	168	0	ENST00000262189.6:c.2423C>A	p.Ala808Asp	p.A808D	ENST00000262189	NM_170606.2	808	gCt/gAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	58	171	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	23	133	1	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	41	120	1	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	104	304	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
B2M	567	MSKCC	GRCh37	15	45007834	45007835	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	83	249	0	ENST00000558401.1:c.284_285del	p.Lys95ArgfsTer2	p.K95Rfs*2	ENST00000558401	NM_004048.2	94	gAA/g																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671654	67671655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	106	247	0	ENST00000264010.4:c.2070dup	p.Glu691ArgfsTer5	p.E691Rfs*5	ENST00000264010	NM_006565.3	688	gta/gtAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993731	72993731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	29	309	0	ENST00000268489.5:c.314del	p.Pro105ArgfsTer4	p.P105Rfs*4	ENST00000268489	NM_006885.3	105	cCg/cg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	244	334	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59858268	59858268	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	65	177	0	ENST00000259008.2:c.1727del	p.Asn576IlefsTer14	p.N576Ifs*14	ENST00000259008	NM_032043.2	576	aAt/at																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223738	36223739	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	94	344	0	ENST00000222270.7:c.6292dup	p.Ala2098GlyfsTer10	p.A2098Gfs*10	ENST00000222270	NM_014727.1	2096	-/G																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	18	92	0	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5208009	5208009	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746059446		P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	81	304	0	ENST00000357368.4:c.5702G>A	p.Arg1901Gln	p.R1901Q	ENST00000357368	NM_002850.3	1901	cGg/cAg																																																																															
CASP8	841	MSKCC	GRCh37	2	202149798	202149799	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	78	257	0	ENST00000358485.4:c.1245dup	p.Ile416TyrfsTer8	p.I416Yfs*8	ENST00000358485	NM_001080125.1	413	-/T																																																																															
CUL3	8452	MSKCC	GRCh37	2	225378351	225378351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	35	136	0	ENST00000264414.4:c.544G>A	p.Ala182Thr	p.A182T	ENST00000264414	NM_003590.4	182	Gca/Aca																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	73	327	0	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																															
MSH6	2956	MSKCC	GRCh37	2	48028135	48028135	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63750563		P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	27	237	0	ENST00000234420.5:c.3013C>T	p.Arg1005Ter	p.R1005*	ENST00000234420	NM_000179.2	1005	Cga/Tga																																																																															
REL	5966	MSKCC	GRCh37	2	61147771	61147771	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	80	323	1	ENST00000295025.8:c.1086del	p.Glu363AsnfsTer11	p.E363Nfs*11	ENST00000295025	NM_002908.2	361	Aaa/aa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31025008	31025008	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150119795		P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	120	231	0	ENST00000375687.4:c.4493C>T	p.Thr1498Met	p.T1498M	ENST00000375687	NM_015338.5	1498	aCg/aTg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446744	29446744	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1457204359		P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	79	257	0	ENST00000544604.2:c.2575C>T	p.Arg859Ter	p.R859*	ENST00000544604	NM_001206998.1	859	Cga/Tga																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146656	185146656	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145694468		P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	121	224	0	ENST00000265026.3:c.287C>T	p.Ala96Val	p.A96V	ENST00000265026	NM_004721.4	96	gCg/gTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164211	47164211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761234986		P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	40	198	0	ENST00000409792.3:c.1915G>A	p.Glu639Lys	p.E639K	ENST00000409792	NM_014159.6	639	Gaa/Aaa																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940112	49940112	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs767239578		P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	87	291	0	ENST00000296474.3:c.931del	p.Ala311ProfsTer27	p.A311Pfs*27	ENST00000296474	NM_002447.2	311	Gcc/cc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	96	260	2	ENST00000382895.3:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382895	NM_133330.2	1341	Ccc/cc																																																																															
KIT	3815	MSKCC	GRCh37	4	55561755	55561755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759250095		P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	86	241	0	ENST00000288135.5:c.145C>T	p.Arg49Cys	p.R49C	ENST00000288135	NM_000222.2	49	Cgc/Tgc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	44	151	0	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970916	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	58	167	0	ENST00000265081.6:c.1147_1148del	p.Lys383GlyfsTer20	p.K383Gfs*20	ENST00000265081	NM_002439.4	381	AAa/a																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685330	86685330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	69	151	0	ENST00000274376.6:c.3046C>T	p.Arg1016Cys	p.R1016C	ENST00000274376	NM_002890.2	1016	Cgt/Tgt																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192428	138192428	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1170624868		P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	76	182	0	ENST00000237289.4:c.64C>T	p.Arg22Trp	p.R22W	ENST00000237289	NM_001270507.1	22	Cgg/Tgg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202374	138202374	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	106	275	0	ENST00000237289.4:c.2295del	p.Ala766ProfsTer50	p.A766Pfs*50	ENST00000237289	NM_001270507.1	764	gCc/gc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162475169	162475169	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs530632014		P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	63	173	0	ENST00000366898.1:c.572G>A	p.Arg191Gln	p.R191Q	ENST00000366898	NM_004562.2	191	cGg/cAg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367315	50367315	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751092583		P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	82	233	0	ENST00000331340.3:c.122C>T	p.Ser41Leu	p.S41L	ENST00000331340	NM_006060.4	41	tCg/tTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241694	55241694	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	89	205	0	ENST00000275493.2:c.2142G>C	p.Lys714Asn	p.K714N	ENST00000275493	NM_005228.3	714	aaG/aaC																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933778	39933778	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	108	322	0	ENST00000378444.4:c.821del	p.Pro274GlnfsTer104	p.P274Qfs*104	ENST00000378444	NM_001123385.1	274	cCa/ca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27058034	27058034	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	91	262	0	ENST00000324856.7:c.1742A>G	p.Gln581Arg	p.Q581R	ENST00000324856	NM_006015.4	581	cAg/cGg																																																																															
RET	5979	MSKCC	GRCh37	10	43596015	43596015	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	74	258	0	ENST00000355710.3:c.182A>C	p.Glu61Ala	p.E61A	ENST00000355710	NM_020975.4	61	gAg/gCg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342475	118342475	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	56	222	0	ENST00000534358.1:c.601A>G	p.Lys201Glu	p.K201E	ENST00000534358	NM_005933.3	201	Aaa/Gaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448502	49448502	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	21	295	0	ENST00000301067.7:c.209A>T	p.Asn70Ile	p.N70I	ENST00000301067	NM_003482.3	70	aAc/aTc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805374	89805374	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	70	295	0	ENST00000389301.3:c.4176del	p.Val1393TrpfsTer3	p.V1393Wfs*3	ENST00000389301	NM_000135.2	1392	ccC/cc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942125	17942125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	74	195	0	ENST00000458235.1:c.2890A>G	p.Lys964Glu	p.K964E	ENST00000458235	NM_000215.3	964	Aag/Gag																																																																															
AKT2	208	MSKCC	GRCh37	19	40743925	40743925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	68	261	0	ENST00000392038.2:c.782C>T	p.Ser261Leu	p.S261L	ENST00000392038	NM_001626.4	261	tCg/tTg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205829	128205829	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781485787		P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	75	248	0	ENST00000341105.2:c.46G>A	p.Val16Met	p.V16M	ENST00000341105	NM_032638.4	16	Gtg/Atg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967156	134967156	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	23	221	0	ENST00000398015.3:c.2497-2A>G		p.X833_splice	ENST00000398015	NM_004441.4	833																																																																																
SOX2	6657	MSKCC	GRCh37	3	181430554	181430554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	98	255	0	ENST00000325404.1:c.406G>A	p.Gly136Ser	p.G136S	ENST00000325404	NM_003106.3	136	Ggc/Agc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1977065	1977066	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	87	247	0	ENST00000382895.3:c.3565dup	p.Thr1189AsnfsTer17	p.T1189Nfs*17	ENST00000382895	NM_133330.2	1187	gaa/gAaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217139	66217139	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	26	223	0	ENST00000273854.3:c.2476G>C	p.Glu826Gln	p.E826Q	ENST00000273854	NM_004439.5	826	Gaa/Caa																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288744	33288744	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146083974		P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	103	263	0	ENST00000374542.5:c.808C>T	p.Arg270Cys	p.R270C	ENST00000374542	NM_001141970.1	270	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151896433	151896433	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	43	202	0	ENST00000262189.6:c.4204G>T	p.Gly1402Cys	p.G1402C	ENST00000262189	NM_170606.2	1402	Ggt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			385	164	471	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			339	172	560	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			134	48	254	0	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2647704	2647704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			252	142	381	0	ENST00000342085.4:c.1607G>A	p.Cys536Tyr	p.C536Y	ENST00000342085	NM_002613.4	536	tGc/tAc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			298	130	435	8	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	119	552	1	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178095	56178095	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374455781		P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	125	378	1	ENST00000399503.3:c.3068G>A	p.Arg1023His	p.R1023H	ENST00000399503	NM_005921.1	1023	cGc/cAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270530	98270530	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1057518664		P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			231	65	264	0	ENST00000331920.6:c.114del	p.Leu39CysfsTer41	p.L39Cfs*41	ENST00000331920	NM_000264.3	38	ggG/gg																																																																															
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			256	95	320	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436204	110436204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			218	114	466	0	ENST00000375856.3:c.2197G>A	p.Ala733Thr	p.A733T	ENST00000375856	NM_003749.2	733	Gcc/Acc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56348561	56348561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			214	102	348	0	ENST00000348428.3:c.374del	p.Pro125GlnfsTer3	p.P125Qfs*3	ENST00000348428	NM_006785.3	123	agC/ag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			348	66	460	2	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			218	93	309	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
CCND1	595	MSKCC	GRCh37	11	69466004	69466004	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			272	141	544	1	ENST00000227507.2:c.842T>A	p.Val281Glu	p.V281E	ENST00000227507	NM_053056.2	281	gTg/gAg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728500	190728500	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs139932286		P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			167	90	350	0	ENST00000441310.2:c.1888C>T	p.Arg630Ter	p.R630*	ENST00000441310	NM_000534.4	630	Cga/Tga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346437	89346437	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			270	114	477	1	ENST00000301030.4:c.6513del	p.Val2173SerfsTer2	p.V2173Sfs*2	ENST00000301030	NM_001256183.1	2171	ccC/cc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43784245	43784245	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754219111		P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			251	110	350	0	ENST00000382044.4:c.241G>A	p.Gly81Ser	p.G81S	ENST00000382044	NM_001141980.1	81	Ggt/Agt																																																																															
BBC3	27113	MSKCC	GRCh37	19	47725077	47725077	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs748900635		P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			301	110	472	0	ENST00000449228.1:c.667C>T	p.Arg223Ter	p.R223*	ENST00000449228	NM_001127240.2	223	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789607	3789607	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369991761		P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			258	123	375	0	ENST00000262367.5:c.4252G>A	p.Gly1418Ser	p.G1418S	ENST00000262367	NM_004380.2	1418	Ggc/Agc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741690	17741690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			230	116	420	0	ENST00000250003.3:c.361C>T	p.Arg121Cys	p.R121C	ENST00000250003	NM_002478.4	121	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178948037	178948037	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	91	357	0	ENST00000263967.3:c.2813del	p.Leu938TrpfsTer19	p.L938Wfs*19	ENST00000263967	NM_006218.2	937	Ttt/tt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			172	194	380	14	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21336681	21336681	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1366986114		P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			265	130	443	1	ENST00000215739.8:c.27del	p.Gln10ArgfsTer15	p.Q10Rfs*15	ENST00000215739	NM_006767.3	7	acG/ac																																																																															
MITF	4286	MSKCC	GRCh37	3	70008501	70008501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147148433		P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			258	122	392	0	ENST00000352241.4:c.1091G>A	p.Arg364His	p.R364H	ENST00000352241	NM_198159.2	364	cGc/cAc																																																																															
PARK2	5071	MSKCC	GRCh37	6	161781122	161781122	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			307	44	298	0	ENST00000366898.1:c.1283del	p.Asn428MetfsTer7	p.N428Mfs*7	ENST00000366898	NM_004562.2	428	aAt/at																																																																															
APLNR	187	MSKCC	GRCh37	11	57003907	57003907	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	A	A	G			P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	61	511	0	ENST00000257254.3:c.572T>C	p.Val191Ala	p.V191A	ENST00000257254		191	gTg/gCg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437936	110437936	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1331393588		P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			114	45	195	0	ENST00000375856.3:c.465del	p.Ala156ProfsTer45	p.A156Pfs*45	ENST00000375856	NM_003749.2	155	ccC/cc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562702	95562704	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-			P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			241	123	436	0	ENST00000343455.3:c.4553_4555del	p.Val1518del	p.V1518del	ENST00000343455	NM_177438.2	1518	gTTGaa/gaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286225	66286225	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			126	64	328	0	ENST00000273854.3:c.1461G>T	p.Leu487Phe	p.L487F	ENST00000273854	NM_004439.5	487	ttG/ttT																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18272207	18272220	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTCCCGCGGTCC	GGGTCCCGCGGTCC	-			P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			223	118	441	0	ENST00000222254.8:c.720_733del	p.Ala242GlyfsTer28	p.A242Gfs*28	ENST00000222254	NM_005027.3	239	ctGGGTCCCGCGGTCCgg/ctgg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396853	139396853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			228	135	387	0	ENST00000277541.6:c.5255G>A	p.Cys1752Tyr	p.C1752Y	ENST00000277541	NM_017617.3	1752	tGc/tAc																																																																															
MAD2L2	10459	MSKCC	GRCh37	1	11740648	11740648	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			256	137	412	0	ENST00000235310.3:c.11T>G	p.Leu4Arg	p.L4R	ENST00000235310		4	cTc/cGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0074657-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			286	37	331	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618601	37618601	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0074657-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			678	114	746	0	ENST00000447079.4:c.277C>T	p.Arg93Ter	p.R93*	ENST00000447079	NM_015083.1	93	Cga/Tga																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922751	44922751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074657-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			530	95	563	0	ENST00000377967.4:c.1612G>T	p.Val538Phe	p.V538F	ENST00000377967	NM_021140.2	538	Gtc/Ttc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044839	47044839	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0074657-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			660	118	842	0	ENST00000329236.7:c.1933-2A>G		p.X645_splice	ENST00000329236	NM_001204466.1	645																																																																																
RFWD2	64326	MSKCC	GRCh37	1	176050372	176050372	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074657-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			322	32	429	0	ENST00000367669.3:c.1193A>T	p.Lys398Met	p.K398M	ENST00000367669	NM_022457.5	398	aAg/aTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7170602	7170602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074657-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			529	107	549	0	ENST00000302850.5:c.1429G>T	p.Gly477Trp	p.G477W	ENST00000302850	NM_000208.2	477	Ggg/Tgg																																																																															
RAC2	5880	MSKCC	GRCh37	22	37622780	37622780	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074657-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			588	70	543	0	ENST00000249071.6:c.512A>G	p.Glu171Gly	p.E171G	ENST00000249071	NM_002872.4	171	gAg/gGg																																																																															
SDHA	6389	MSKCC	GRCh37	5	236642	236642	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074657-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			407	63	388	0	ENST00000264932.6:c.1360G>T	p.Ala454Ser	p.A454S	ENST00000264932	NM_004168.2	454	Gca/Tca																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876536	35876536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074657-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			558	108	576	0	ENST00000303115.3:c.1328C>T	p.Ser443Leu	p.S443L	ENST00000303115	NM_002185.3	443	tCa/tTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0077593-T07-IM7									Unknown	SOMATIC				MSK-IMPACT			540	98	330	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26029184	26029184	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077593-T07-IM7									Unknown	SOMATIC				MSK-IMPACT			446	104	275	0	ENST00000435504.4:c.166C>A	p.Leu56Met	p.L56M	ENST00000435504		56	Ctg/Atg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445014	89445014	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077593-T07-IM7									Unknown	SOMATIC				MSK-IMPACT			517	93	389	0	ENST00000336596.2:c.1334A>T	p.Lys445Ile	p.K445I	ENST00000336596	NM_005233.5	445	aAa/aTa																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233189	69233189	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077593-T07-IM7									Unknown	SOMATIC				MSK-IMPACT			785	42	395	0	ENST00000462284.1:c.1054A>C	p.Lys352Gln	p.K352Q	ENST00000462284	NM_002392.5	352	Aaa/Caa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32945129	32945129	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80359104		P-0077748-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			172	10	330	0	ENST00000380152.3:c.8524C>T	p.Arg2842Cys	p.R2842C	ENST00000380152		2842	Cgc/Tgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690847	89690847	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587776667		P-0077748-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			139	18	199	0	ENST00000371953.3:c.253+1G>A		p.X85_splice	ENST00000371953	NM_000314.4	85																																																																																
MGA	23269	MSKCC	GRCh37	15	42000020	42000020	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077748-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			151	19	395	0	ENST00000219905.7:c.2287del	p.Trp763GlyfsTer54	p.W763Gfs*54	ENST00000219905	NM_001164273.1	761	ccT/cc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096697	178096697	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078018-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	153	326	0	ENST00000397062.3:c.634A>G	p.Met212Val	p.M212V	ENST00000397062	NM_006164.4	212	Atg/Gtg																																																																															
RB1	5925	MSKCC	GRCh37	13	48878109	48878112	+	frameshift_variant	Frame_Shift_Del	DEL	CCGG	CCGG	-			P-0078018-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			248	165	472	0	ENST00000267163.4:c.62_65del	p.Pro21HisfsTer43	p.P21Hfs*43	ENST00000267163	NM_000321.2	21	CCGGca/ca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242483	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACA	AATTAAGAGAAGCAACA	TTCCT			P-0078018-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			402	215	299	1	ENST00000275493.2:c.2237_2253delinsTTCCT	p.Glu746_Thr751delinsValPro	p.E746_T751delinsVP	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACA/gTTCCT																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0078254-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			556	41	363	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0078254-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	148	454	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44732862	44732862	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760601613		P-0078254-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	26	331	0	ENST00000377967.4:c.65A>G	p.Glu22Gly	p.E22G	ENST00000377967	NM_021140.2	22	gAa/gGa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31380436	31380436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078254-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			580	138	457	0	ENST00000328111.2:c.926C>T	p.Ala309Val	p.A309V	ENST00000328111	NM_006892.3	309	gCt/gTt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226992	2226992	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078254-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			586	67	428	0	ENST00000398665.3:c.4472C>A	p.Ser1491Tyr	p.S1491Y	ENST00000398665	NM_032482.2	1491	tCc/tAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112534	115112536	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0078254-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			519	69	469	0	ENST00000257566.3:c.1204_1206del	p.Glu402del	p.E402del	ENST00000257566	NM_016569.3	402	GAG/-																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223415	53223516	+	inframe_deletion	In_Frame_Del	DEL	AGCCGTTGGCGGAGCTCAGCCAGCCGTCCCAAAAGAGCAGTCACATCTTCAGAGGCCAGAGCCTGCCTGGCGCGGCCTTGCCAGCTGATGGCCCTCTCTGTG	AGCCGTTGGCGGAGCTCAGCCAGCCGTCCCAAAAGAGCAGTCACATCTTCAGAGGCCAGAGCCTGCCTGGCGCGGCCTTGCCAGCTGATGGCCCTCTCTGTG	-			P-0078254-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			421	54	442	0	ENST00000375401.3:c.3843_3944del	p.Thr1282_Leu1315del	p.T1282_L1315del	ENST00000375401	NM_004187.3	1281	ctCACAGAGAGGGCCATCAGCTGGCAAGGCCGCGCCAGGCAGGCTCTGGCCTCTGAAGATGTGACTGCTCTTTTGGGACGGCTGGCTGAGCTCCGCCAACGGCTa/cta																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001422	150001426	+	frameshift_variant	Frame_Shift_Del	DEL	TAGTA	TAGTA	-			P-0078254-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			573	74	445	0	ENST00000253339.5:c.2178_2182del	p.Asp726GlufsTer24	p.D726Efs*24	ENST00000253339		726	gaTACTAag/gaag																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813358	102813358	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078254-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			495	75	443	0	ENST00000307046.8:c.331C>A	p.Pro111Thr	p.P111T	ENST00000307046	NM_001111285.1	111	Ccc/Acc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311712	15311712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078254-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			437	67	263	0	ENST00000263388.2:c.5G>A	p.Gly2Glu	p.G2E	ENST00000263388	NM_000435.2	2	gGg/gAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593472	48593473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0078368-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			190	61	451	0	ENST00000342988.3:c.1225_1226dup	p.Gln410TyrfsTer6	p.Q410Yfs*6	ENST00000342988	NM_005359.5	408	ttt/ttTGt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164104	47164105	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TTTATATT			P-0078368-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			311	76	514	0	ENST00000409792.3:c.2014_2021dup	p.Asn674LysfsTer3	p.N674Kfs*3	ENST00000409792	NM_014159.6	674	aat/aaAATATAAAt																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871070	12871070	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078368-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			349	84	699	0	ENST00000228872.4:c.297C>G	p.Cys99Trp	p.C99W	ENST00000228872	NM_004064.3	99	tgC/tgG																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098690	47098717	+	frameshift_variant	Frame_Shift_Del	DEL	TCCATGCTGGGTGTGGGCAGGAGCACCT	TCCATGCTGGGTGTGGGCAGGAGCACCT	CACCG			P-0078368-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			356	106	696	0	ENST00000409792.3:c.6557_6584delinsCGGTG	p.Lys2186ThrfsTer11	p.K2186Tfs*11	ENST00000409792	NM_014159.6	2186	aAGGTGCTCCTGCCCACACCCAGCATGGAc/aCGGTGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577587	7577587	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078427-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	172	490	0	ENST00000269305.4:c.694A>T	p.Ile232Phe	p.I232F	ENST00000269305	NM_001126112.2	232	Atc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0078427-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			212	93	307	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591855	48591866	+	inframe_deletion	In_Frame_Del	DEL	AAGGTTCCTTCA	AAGGTTCCTTCA	-			P-0078427-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			294	187	541	0	ENST00000342988.3:c.1019_1030del	p.Lys340_Ser343del	p.K340_S343del	ENST00000342988	NM_005359.5	340	AAGGTTCCTTCA/-																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426798	212426798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078427-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			449	48	462	0	ENST00000342788.4:c.2317G>A	p.Ala773Thr	p.A773T	ENST00000342788	NM_005235.2	773	Gca/Aca																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0078722-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			127	73	483	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212252716	212252716	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs755459959		P-0078722-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			320	69	417	0	ENST00000342788.4:c.3137G>A	p.Ser1046Asn	p.S1046N	ENST00000342788	NM_005235.2	1046	aGt/aAt																																																																															
ATM	472	MSKCC	GRCh37	11	108160338	108160338	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057516311		P-0078722-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			225	121	303	0	ENST00000278616.4:c.4246C>T	p.Gln1416Ter	p.Q1416*	ENST00000278616	NM_000051.3	1416	Cag/Tag																																																																															
EP300	2033	MSKCC	GRCh37	22	41572831	41572833	+	frameshift_variant	Frame_Shift_Del	DEL	GAG	GAG	AA			P-0078722-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			238	75	552	0	ENST00000263253.7:c.5116_5118delinsAA	p.Glu1706LysfsTer3	p.E1706Kfs*3	ENST00000263253	NM_001429.3	1706	GAG/AA																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0078899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	216	388	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0078899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	293	386	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	283	381	0	ENST00000374672.4:c.1225A>C	p.Lys409Gln	p.K409Q	ENST00000374672	NM_004235.4	409	Aag/Cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0078899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	166	285	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CTR9	9646	MSKCC	GRCh37	11	10783553	10783553	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	193	307	0	ENST00000361367.2:c.801C>G	p.Ser267Arg	p.S267R	ENST00000361367	NM_014633.3	267	agC/agG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916728	178916728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078902-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	31	322	0	ENST00000263967.3:c.115G>A	p.Glu39Lys	p.E39K	ENST00000263967	NM_006218.2	39	Gag/Aag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831620	72831620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078902-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	138	473	0	ENST00000268489.5:c.4961C>T	p.Pro1654Leu	p.P1654L	ENST00000268489	NM_006885.3	1654	cCt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750600586		P-0078942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	32	567	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575677	48575677	+	stop_gained	Nonsense_Mutation	SNP	T	T	G	rs377767329		P-0078942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	19	271	0	ENST00000342988.3:c.437T>G	p.Leu146Ter	p.L146*	ENST00000342988	NM_005359.5	146	tTa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0078942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	32	296	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061144	38061144	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	54	400	0	ENST00000250448.2:c.845G>T	p.Ser282Ile	p.S282I	ENST00000250448	NM_004496.3	282	aGc/aTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0079082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			522	855	373	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ALK	238	MSKCC	GRCh37	2	29551215	29551215	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs777414641		P-0079082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			547	48	486	0	ENST00000389048.3:c.1414+1G>A		p.X472_splice	ENST00000389048	NM_004304.4	472																																																																																
PARP1	142	MSKCC	GRCh37	1	226595615	226595615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			657	96	319	0	ENST00000366794.5:c.16G>A	p.Asp6Asn	p.D6N	ENST00000366794	NM_001618.3	6	Gat/Aat																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265428	46265428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			549	55	417	0	ENST00000371998.3:c.2298G>T	p.Met766Ile	p.M766I	ENST00000371998		766	atG/atT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118369149	118369149	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			494	67	383	0	ENST00000534358.1:c.5867A>T	p.Asn1956Ile	p.N1956I	ENST00000534358	NM_005933.3	1956	aAc/aTc																																																																															
FANCC	2176	MSKCC	GRCh37	9	97864051	97864051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			453	113	403	0	ENST00000289081.3:c.1615G>A	p.Glu539Lys	p.E539K	ENST00000289081	NM_000136.2	539	Gaa/Aaa																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123480610	123480610	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199639961		P-0079288-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	96	234	1	ENST00000371139.4:c.118G>A	p.Val40Met	p.V40M	ENST00000371139	NM_001114937.2	40	Gtg/Atg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254911	16254912	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079288-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	109	585	0	ENST00000375759.3:c.2179dup	p.Ser727LysfsTer24	p.S727Kfs*24	ENST00000375759	NM_015001.2	726	caa/cAaa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138461528	138461528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079288-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	56	445	0	ENST00000289153.2:c.493G>A	p.Gly165Arg	p.G165R	ENST00000289153	NM_006219.2	165	Gga/Aga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0079289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	17	419	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226995	2226995	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	27	408	0	ENST00000398665.3:c.4475C>A	p.Ser1492Tyr	p.S1492Y	ENST00000398665	NM_032482.2	1492	tCc/tAc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39584362	39584362	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	24	361	0	ENST00000262039.4:c.1027C>G	p.Gln343Glu	p.Q343E	ENST00000262039	NM_002647.2	343	Caa/Gaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68844226	68844243	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ATGGAAGGTGCTCTTCCA	ATGGAAGGTGCTCTTCCA	-			P-0079289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	40	307	0	ENST00000261769.5:c.814_831del	p.Met272_Pro277del	p.M272_P277del	ENST00000261769	NM_004360.3	272	ATGGAAGGTGCTCTTCCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0079372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	342	391	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0079372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	27	276	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913255		P-0079372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	155	429	0	ENST00000369535.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caT																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021818	71021818	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs869025203		P-0079372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	71	457	0	ENST00000318789.4:c.1540C>T	p.Arg514Cys	p.R514C	ENST00000318789	NM_032682.5	514	Cgt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0079387-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			228	360	341	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149441110	149441110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079387-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			391	77	411	0	ENST00000286301.3:c.1802C>T	p.Ala601Val	p.A601V	ENST00000286301	NM_005211.3	601	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs985033810		P-0079387-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			148	399	424	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201788	66201788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079387-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			455	47	461	0	ENST00000273854.3:c.2714C>T	p.Ala905Val	p.A905V	ENST00000273854	NM_004439.5	905	gCt/gTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48919229	48919229	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079387-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			77	95	253	0	ENST00000267163.4:c.396del	p.Phe132LeufsTer4	p.F132Lfs*4	ENST00000267163	NM_000321.2	132	Ttt/tt																																																																															
MSH3	4437	MSKCC	GRCh37	5	80057378	80057378	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079387-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	65	393	0	ENST00000265081.6:c.1777C>G	p.Arg593Gly	p.R593G	ENST00000265081	NM_002439.4	593	Cgg/Ggg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347049	89347069	+	inframe_deletion	In_Frame_Del	DEL	AGAGGTGCCCCCGATCAGGCT	AGAGGTGCCCCCGATCAGGCT	-			P-0079387-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			425	40	540	0	ENST00000301030.4:c.5881_5901del	p.Ser1961_Ser1967del	p.S1961_S1967del	ENST00000301030	NM_001256183.1	1961	AGCCTGATCGGGGGCACCTCT/-																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923771	72923771	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079387-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			308	40	438	0	ENST00000268489.5:c.3307C>G	p.Leu1103Val	p.L1103V	ENST00000268489	NM_006885.3	1103	Ctc/Gtc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260531	16260531	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753076589		P-0079436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	319	786	0	ENST00000375759.3:c.7796C>T	p.Ser2599Leu	p.S2599L	ENST00000375759	NM_015001.2	2599	tCg/tTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332414	70332414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs771320434		P-0079436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	107	622	0	ENST00000373644.4:c.319C>T	p.Arg107Ter	p.R107*	ENST00000373644	NM_030625.2	107	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0079436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	302	825	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280804	41280804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	253	699	0	ENST00000349496.5:c.2317C>T	p.Gln773Ter	p.Q773*	ENST00000349496	NM_001904.3	773	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0079436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	55	367	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0079436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	183	624	0	ENST00000257430.4:c.4063dup	p.Ser1355PhefsTer20	p.S1355Ffs*20	ENST00000257430	NM_000038.5	1353	-/T																																																																															
BRCA1	672	MSKCC	GRCh37	17	41197816	41197816	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			759	136	603	0	ENST00000357654.3:c.5471T>C	p.Ile1824Thr	p.I1824T	ENST00000357654	NM_007294.3	1824	aTt/aCt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78831695	78831695	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	395	644	0	ENST00000306801.3:c.1504G>T	p.Asp502Tyr	p.D502Y	ENST00000306801	NM_020761.2	502	Gac/Tac																																																																															
SMO	6608	MSKCC	GRCh37	7	128846013	128846013	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765279156		P-0079512-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			442	57	486	0	ENST00000249373.3:c.943G>A	p.Val315Ile	p.V315I	ENST00000249373	NM_005631.4	315	Gtc/Atc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098357	47098358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079512-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			579	77	502	0	ENST00000409792.3:c.6916dup	p.Tyr2306LeufsTer63	p.Y2306Lfs*63	ENST00000409792	NM_014159.6	2306	tat/tTat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161895	47161895	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079512-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			683	106	582	0	ENST00000409792.3:c.4231del	p.Ile1411Ter	p.I1411*	ENST00000409792	NM_014159.6	1411	Ata/ta																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271503	26271503	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0079512-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			689	120	737	0	ENST00000305910.3:c.110A>T	p.Lys37Met	p.K37M	ENST00000305910	NM_003534.2	37	aAg/aTg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37002723	37002723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079518-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			255	112	403	0	ENST00000358127.4:c.526G>A	p.Gly176Ser	p.G176S	ENST00000358127	NM_001280556.1	176	Ggc/Agc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562618	95562618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079518-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			265	79	410	0	ENST00000343455.3:c.4639G>A	p.Asp1547Asn	p.D1547N	ENST00000343455	NM_177438.2	1547	Gac/Aac																																																																															
CYLD	1540	MSKCC	GRCh37	16	50815318	50815319	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0079518-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			143	63	316	0	ENST00000398568.2:c.1672_1673del	p.Leu558SerfsTer8	p.L558Sfs*8	ENST00000398568	NM_001042412.1	557	tcTTta/tcta																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128347949	128347949	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079518-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			244	87	331	0	ENST00000265960.3:c.556A>G	p.Ser186Gly	p.S186G	ENST00000265960	NM_001006617.1	186	Agc/Ggc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519999		P-0079519-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	39	340	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78897402	78897402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079519-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			448	33	561	0	ENST00000306801.3:c.2737G>A	p.Gly913Arg	p.G913R	ENST00000306801	NM_020761.2	913	Ggg/Agg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53250099	53250099	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0079519-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			143	60	195	0	ENST00000375401.3:c.151-1G>A		p.X51_splice	ENST00000375401	NM_004187.3	51																																																																																
NF2	4771	MSKCC	GRCh37	22	30035098	30035098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079519-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			306	27	349	0	ENST00000338641.4:c.260del	p.Ser87Ter	p.S87*	ENST00000338641	NM_000268.3	87	tCa/ta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0079542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	20	375	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NF1	4763	MSKCC	GRCh37	17	29686029	29686029	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0079542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	22	289	0	ENST00000358273.4:c.8156C>G	p.Ser2719Ter	p.S2719*	ENST00000358273	NM_001042492.2	2719	tCa/tGa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039886	47039886	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	18	403	0	ENST00000329236.7:c.997del	p.Gln333SerfsTer74	p.Q333Sfs*74	ENST00000329236	NM_001204466.1	332	gCc/gc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112529	115112529	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	38	490	0	ENST00000257566.3:c.1211G>C	p.Cys404Ser	p.C404S	ENST00000257566	NM_016569.3	404	tGc/tCc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438256	56438256	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	30	456	0	ENST00000407977.2:c.737G>C	p.Arg246Thr	p.R246T	ENST00000407977		246	aGg/aCg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113151	209113151	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	46	536	0	ENST00000345146.2:c.356G>C	p.Arg119Pro	p.R119P	ENST00000345146	NM_005896.2	119	cGg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0079595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	51	319	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	47	310	1	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874526	151874526	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761335251		P-0079595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	57	368	0	ENST00000262189.6:c.8012C>T	p.Thr2671Met	p.T2671M	ENST00000262189	NM_170606.2	2671	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175738	112175748	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGATGCTGA	CCAGATGCTGA	-			P-0079595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	105	402	0	ENST00000257430.4:c.4447_4457del	p.Pro1483TyrfsTer27	p.P1483Yfs*27	ENST00000257430	NM_000038.5	1483	CCAGATGCTGAt/t																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101351	27101361	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCCTTCCCA	TGGCCTTCCCA	-			P-0079595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	36	435	0	ENST00000324856.7:c.4637_4647del	p.Pro1546HisfsTer22	p.P1546Hfs*22	ENST00000324856	NM_006015.4	1545	TGGCCTTCCCAt/t																																																																															
BRD4	23476	MSKCC	GRCh37	19	15374304	15374304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	67	359	0	ENST00000263377.2:c.1268G>A	p.Arg423Gln	p.R423Q	ENST00000263377	NM_058243.2	423	cGa/cAa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589226	67589227	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	50	327	0	ENST00000274335.5:c.1217dup	p.Asn406LysfsTer6	p.N406Kfs*6	ENST00000274335		405	ata/atAa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061193	38061193	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0079603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			73	16	451	0	ENST00000250448.2:c.796T>G	p.Phe266Val	p.F266V	ENST00000250448	NM_004496.3	266	Ttc/Gtc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936133	71936142	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCCGGGCG	GGCCCGGGCG	-			P-0079603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			56	11	320	0	ENST00000298229.2:c.109_118del	p.Arg37AlafsTer78	p.R37Afs*78	ENST00000298229	NM_001567.3	35	ctGGCCCGGGCG/ct																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830322	72830322	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			83	17	536	0	ENST00000268489.5:c.6259C>T	p.Gln2087Ter	p.Q2087*	ENST00000268489	NM_006885.3	2087	Cag/Tag																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045687	26045687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	19	558	0	ENST00000540144.1:c.49C>A	p.Pro17Thr	p.P17T	ENST00000540144	NM_003531.2	17	Ccg/Acg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86674317	86674317	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			52	11	351	0	ENST00000274376.6:c.2449T>C	p.Ser817Pro	p.S817P	ENST00000274376	NM_002890.2	817	Tct/Cct																																																																															
ETV6	2120	MSKCC	GRCh37	12	11992223	11992223	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079611-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			682	79	457	0	ENST00000396373.4:c.313C>G	p.Arg105Gly	p.R105G	ENST00000396373	NM_001987.4	105	Cga/Gga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0079611-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			123	793	609	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602734	10602735	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	AG			P-0079611-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			116	362	531	0	ENST00000171111.5:c.843_844delinsCT	p.Gln282Ter	p.Q282*	ENST00000171111	NM_203500.1	281	ctGCag/ctCTag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221298	1221299	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0079611-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			136	430	590	0	ENST00000326873.7:c.824dup	p.Asp277ArgfsTer8	p.D277Rfs*8	ENST00000326873	NM_000455.4	274	atc/atCc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361249	66361249	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1430800927		P-0079611-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			418	106	402	0	ENST00000273854.3:c.923G>T	p.Gly308Val	p.G308V	ENST00000273854	NM_004439.5	308	gGg/gTg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876392	35876392	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079611-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			591	96	454	0	ENST00000303115.3:c.1184A>T	p.Lys395Met	p.K395M	ENST00000303115	NM_002185.3	395	aAg/aTg																																																																															
RET	5979	MSKCC	GRCh37	10	43609120	43609120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079611-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			649	199	660	0	ENST00000355710.3:c.1876C>A	p.Gln626Lys	p.Q626K	ENST00000355710	NM_020975.4	626	Cag/Aag																																																																															
TP63	8626	MSKCC	GRCh37	3	189607236	189607236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079611-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			521	100	606	0	ENST00000264731.3:c.1615C>T	p.Pro539Ser	p.P539S	ENST00000264731	NM_003722.4	539	Ccc/Tcc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176696710	176696710	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0079611-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			560	69	494	0	ENST00000439151.2:c.5411A>C	p.Tyr1804Ser	p.Y1804S	ENST00000439151	NM_022455.4	1804	tAt/tCt																																																																															
HGF	3082	MSKCC	GRCh37	7	81340823	81340823	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079611-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	209	242	0	ENST00000222390.5:c.1418C>A	p.Thr473Asn	p.T473N	ENST00000222390	NM_000601.4	473	aCc/aAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68982101	68982101	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0079611-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			505	37	221	0	ENST00000288368.4:c.1475T>A	p.Leu492His	p.L492H	ENST00000288368	NM_024870.2	492	cTt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0079623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	374	414	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587782197		P-0079623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	192	580	0	ENST00000269305.4:c.434T>C	p.Leu145Pro	p.L145P	ENST00000269305	NM_001126112.2	145	cTg/cCg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748606	43748606	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	63	470	0	ENST00000382044.4:c.2200C>G	p.Gln734Glu	p.Q734E	ENST00000382044	NM_001141980.1	734	Caa/Gaa																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625469	69625469	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0079623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	61	490	0	ENST00000334134.2:c.325-1G>A		p.X109_splice	ENST00000334134	NM_005247.2	109																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0079635-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	24	273	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0079635-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	43	472	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0079635-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	67	334	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MET	4233	MSKCC	GRCh37	7	116411882	116411895	+	splice_region_variant,intron_variant	Splice_Region	DEL	TTTCTTTCTCTCTG	TTTCTTTCTCTCTG	-			P-0079636-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	167	622	0	ENST00000397752.3:c.2888-18_2888-5del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0079644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	218	404	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0079644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	185	317	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972801	32972801	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80358397		P-0079644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	207	409	0	ENST00000380152.3:c.10151G>A	p.Arg3384Gln	p.R3384Q	ENST00000380152		3384	cGa/cAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593559	48593559	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0079644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	186	259	0	ENST00000342988.3:c.1308+2T>G		p.X436_splice	ENST00000342988	NM_005359.5	436																																																																																
NSD1	64324	MSKCC	GRCh37	5	176700656	176700671	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	GCTGTCTGTTTTCATA	GCTGTCTGTTTTCATA	-			P-0079644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	178	278	0	ENST00000439151.2:c.5510-14_5511del		p.X1837_splice	ENST00000439151	NM_022455.4	1837																																																																																
ASXL2	55252	MSKCC	GRCh37	2	25966880	25966880	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0079644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	213	439	0	ENST00000435504.4:c.2326A>C	p.Thr776Pro	p.T776P	ENST00000435504		776	Acc/Ccc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339082	65339082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	235	438	0	ENST00000342505.4:c.454G>A	p.Ala152Thr	p.A152T	ENST00000342505	NM_002227.2	152	Gcc/Acc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424142	47424142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			729	258	403	0	ENST00000404338.3:c.2210C>T	p.Ser737Phe	p.S737F	ENST00000404338	NM_004491.4	737	tCt/tTt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44941732	44941948	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTAGATATGAACTTTTTTTCAGTTGTATGGTGGAAAGGATTGCCAGTTGTAGAACACTAAACTAGACTGCTTTTTGCTTAATCTATAGGAAGAAAATGAAAAAAGAAGTCATCATAAAGACCACTCAGATAGTGAATCTACATCGTCAGATAAGTAAGTCATTTTTAATGTCCACTTAGTATTTCTTTTTAAAAGGCATGTTTCTAATACTGTGTC	TCTAGATATGAACTTTTTTTCAGTTGTATGGTGGAAAGGATTGCCAGTTGTAGAACACTAAACTAGACTGCTTTTTGCTTAATCTATAGGAAGAAAATGAAAAAAGAAGTCATCATAAAGACCACTCAGATAGTGAATCTACATCGTCAGATAAGTAAGTCATTTTTAATGTCCACTTAGTATTTCTTTTTAAAAGGCATGTTTCTAATACTGTGTC	-			P-0079644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	171	163	0	ENST00000377967.4:c.3145-86_3210-9del		p.X1049_splice	ENST00000377967	NM_021140.2	1049																																																																																
NBN	4683	MSKCC	GRCh37	8	90967628	90967628	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	165	324	0	ENST00000265433.3:c.1280C>G	p.Pro427Arg	p.P427R	ENST00000265433	NM_002485.4	427	cCa/cGa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971122	21971123	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0079648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	31	348	0	ENST00000304494.5:c.235dup	p.Thr79AsnfsTer41	p.T79Nfs*41	ENST00000304494	NM_000077.4	79	acc/aAcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0079648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	10	229	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0079651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	279	455	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971122	21971123	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0079651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	306	385	0	ENST00000304494.5:c.235dup	p.Thr79AsnfsTer41	p.T79Nfs*41	ENST00000304494	NM_000077.4	79	acc/aAcc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0079651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	240	344	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118352585	118352585	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	279	426	0	ENST00000534358.1:c.3790C>T	p.Arg1264Ter	p.R1264*	ENST00000534358	NM_005933.3	1264	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0079651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	166	237	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827961	72827961	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	129	354	0	ENST00000268489.5:c.8620G>C	p.Gly2874Arg	p.G2874R	ENST00000268489	NM_006885.3	2874	Ggg/Cgg																																																																															
GAB1	2549	MSKCC	GRCh37	4	144359566	144359567	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0079651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	139	374	0	ENST00000262994.4:c.1009_1010del	p.Ile337SerfsTer16	p.I337Sfs*16	ENST00000262994	NM_002039.3	336	acTAtt/actt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720666	89720666	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0079651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	149	161	0	ENST00000371953.3:c.817T>G	p.Phe273Val	p.F273V	ENST00000371953	NM_000314.4	273	Ttt/Gtt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492889	56492889	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	661	383	0	ENST00000407977.2:c.50T>A	p.Leu17Gln	p.L17Q	ENST00000407977		17	cTg/cAg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812176	212812176	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	370	279	0	ENST00000342788.4:c.400C>A	p.Leu134Ile	p.L134I	ENST00000342788	NM_005235.2	134	Ctt/Att																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929202	44929203	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0079651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	124	339	0	ENST00000377967.4:c.2302_2303del	p.Lys768ValfsTer22	p.K768Vfs*22	ENST00000377967	NM_021140.2	768	AAg/g																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575201	48575201	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	91	246	0	ENST00000342988.3:c.395A>G	p.His132Arg	p.H132R	ENST00000342988	NM_005359.5	132	cAc/cGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767345		P-0079653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	131	408	0	ENST00000342988.3:c.1055G>A	p.Gly352Glu	p.G352E	ENST00000342988	NM_005359.5	352	gGa/gAa																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514277	69514277	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147498407		P-0079653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	185	380	0	ENST00000294312.3:c.404G>A	p.Arg135Gln	p.R135Q	ENST00000294312	NM_005117.2	135	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0079653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	58	233	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974669	21974694	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTACCCACCTGGATCGGCCTCCGACC	CTACCCACCTGGATCGGCCTCCGACC	-			P-0079653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	193	412	0	ENST00000304494.5:c.133_150+8del		p.X45_splice	ENST00000304494	NM_000077.4	45																																																																																
TP53	7157	MSKCC	GRCh37	17	7577023	7577024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0079653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	222	496	0	ENST00000269305.4:c.914dup	p.Arg306AlafsTer31	p.R306Afs*31	ENST00000269305	NM_001126112.2	305	aag/aaAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577029	7577034	+	inframe_deletion	In_Frame_Del	DEL	GCTCCC	GCTCCC	-			P-0079653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	216	494	0	ENST00000269305.4:c.904_909del	p.Gly302_Ser303del	p.G302_S303del	ENST00000269305	NM_001126112.2	302	GGGAGC/-																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123837	46123837	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0079655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	79	382	0	ENST00000334344.6:c.103A>T	p.Lys35Ter	p.K35*	ENST00000334344	NM_152641.2	35	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0079655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	125	325	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244098	5244098	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs73545312		P-0079655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	41	461	0	ENST00000357368.4:c.1384G>A	p.Val462Ile	p.V462I	ENST00000357368	NM_002850.3	462	Gtc/Atc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575106	48575106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	105	377	0	ENST00000342988.3:c.300G>T	p.Arg100Ser	p.R100S	ENST00000342988	NM_005359.5	100	agG/agT																																																																															
BTK	695	MSKCC	GRCh37	X	100625010	100625010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	98	335	0	ENST00000308731.7:c.367C>T	p.Arg123Trp	p.R123W	ENST00000308731	NM_000061.2	123	Cgg/Tgg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937220	36937220	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs563493972		P-0079655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	49	430	1	ENST00000361632.4:c.1099C>T	p.Arg367Trp	p.R367W	ENST00000361632		367	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0079655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	94	451	0	ENST00000407977.2:c.348_349dup	p.Arg117ProfsTer42	p.R117Pfs*42	ENST00000407977		117	cgc/cCCgc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729960	41729961	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0079655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	124	489	0	ENST00000242208.4:c.568dup	p.Glu190GlyfsTer14	p.E190Gfs*14	ENST00000242208	NM_002192.2	190	gaa/gGaa																																																																															
REST	5978	MSKCC	GRCh37	4	57796438	57796438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	134	449	0	ENST00000309042.7:c.1414G>A	p.Asp472Asn	p.D472N	ENST00000309042	NM_005612.4	472	Gat/Aat																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190747	11190747	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759603938		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			745	70	458	0	ENST00000361445.4:c.5452C>T	p.Arg1818Cys	p.R1818C	ENST00000361445	NM_004958.3	1818	Cgt/Tgt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115266618	115266618	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	41	364	0	ENST00000438362.2:c.1897G>T	p.Gly633Cys	p.G633C	ENST00000438362	NM_001242891.1	633	Ggc/Tgc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201980352	201980352	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			807	47	460	0	ENST00000359651.3:c.92del	p.Pro31LeufsTer12	p.P31Lfs*12	ENST00000359651		30	Ccc/cc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057936	27057937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1415146710		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			745	76	490	0	ENST00000324856.7:c.1650dup	p.Tyr551LeufsTer72	p.Y551Lfs*72	ENST00000324856	NM_006015.4	548	-/C																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			829	71	516	2	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	52	320	1	ENST00000262741.5:c.883del	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724361	112724362	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			807	64	491	0	ENST00000369452.4:c.252dup	p.Ser85IlefsTer8	p.S85Ifs*8	ENST00000369452	NM_007373.3	82	aga/agAa																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	59	310	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	70	461	4	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936058	71936058	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	43	262	0	ENST00000298229.2:c.35del	p.Gly12AlafsTer15	p.G12Afs*15	ENST00000298229	NM_001567.3	10	ccG/cc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			715	66	492	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12037474	12037474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	145	408	1	ENST00000396373.4:c.1105C>T	p.Arg369Trp	p.R369W	ENST00000396373	NM_001987.4	369	Cgg/Tgg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287469	46287469	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	104	346	0	ENST00000334344.6:c.5333del	p.Asn1778IlefsTer13	p.N1778Ifs*13	ENST00000334344	NM_152641.2	1776	ttA/tt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448161	49448161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			826	72	437	0	ENST00000301067.7:c.439G>A	p.Ala147Thr	p.A147T	ENST00000301067	NM_003482.3	147	Gca/Aca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913784	32913784	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	56	390	0	ENST00000380152.3:c.5297del	p.Asn1766IlefsTer11	p.N1766Ifs*11	ENST00000380152		1764	tcA/tc																																																																															
KLF5	688	MSKCC	GRCh37	13	73636638	73636638	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			806	97	534	0	ENST00000377687.4:c.905del	p.Pro302ArgfsTer21	p.P302Rfs*21	ENST00000377687	NM_001730.3	301	Ccc/cc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061169	38061169	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1489466891		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	64	390	0	ENST00000250448.2:c.820del	p.Ala274ProfsTer47	p.A274Pfs*47	ENST00000250448	NM_004496.3	274	Gcc/cc																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	125	424	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
IDH2	3418	MSKCC	GRCh37	15	90630705	90630705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			778	44	440	0	ENST00000330062.3:c.781C>T	p.Arg261Cys	p.R261C	ENST00000330062	NM_002168.2	261	Cgt/Tgt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031816	10031816	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs757262372		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	44	344	0	ENST00000330684.3:c.1007C>T	p.Pro336Leu	p.P336L	ENST00000330684	NM_001134407.1	336	cCa/cTa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	82	351	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56875738	56875738	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147381896		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	75	383	0	ENST00000308159.5:c.2342G>A	p.Arg781His	p.R781H	ENST00000308159	NM_014669.4	781	cGc/cAc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944186	81944186	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	70	386	0	ENST00000359376.3:c.1795T>C	p.Tyr599His	p.Y599H	ENST00000359376	NM_002661.3	599	Tac/Cac																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349466	89349466	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749473676		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			732	74	465	0	ENST00000301030.4:c.3484G>A	p.Asp1162Asn	p.D1162N	ENST00000301030	NM_001256183.1	1162	Gac/Aac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			751	166	507	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59858268	59858268	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	64	318	1	ENST00000259008.2:c.1727del	p.Asn576IlefsTer14	p.N576Ifs*14	ENST00000259008	NM_032043.2	576	aAt/at																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			780	59	466	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			875	24	535	0	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
TP53	7157	MSKCC	GRCh37	17	7579383	7579383	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			805	57	493	0	ENST00000269305.4:c.304del	p.Thr102ProfsTer21	p.T102Pfs*21	ENST00000269305	NM_001126112.2	102	Acc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579533	7579533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			740	65	542	0	ENST00000269305.4:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000269305	NM_001126112.2	52	Caa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			699	99	359	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591898	48591898	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			803	82	437	0	ENST00000342988.3:c.1061T>C	p.Val354Ala	p.V354A	ENST00000342988	NM_005359.5	354	gTg/gCg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288870	15288870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	41	290	0	ENST00000263388.2:c.3869C>T	p.Ala1290Val	p.A1290V	ENST00000263388	NM_000435.2	1290	gCg/gTg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266720	18266720	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751392338		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	56	435	0	ENST00000222254.8:c.31G>A	p.Ala11Thr	p.A11T	ENST00000222254	NM_005027.3	11	Gct/Act																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967091	18967092	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs1384543747		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	53	315	0	ENST00000262803.5:c.1814_1815del	p.Glu605AlafsTer17	p.E605Afs*17	ENST00000262803	NM_002911.3	602	gcAGag/gcag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			818	92	558	0	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424759	47424760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			763	81	451	0	ENST00000404338.3:c.2834dup	p.Asn946GlufsTer11	p.N946Efs*11	ENST00000404338	NM_004491.4	943	gaa/gAaa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238950	5238950	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1178903212		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	60	437	0	ENST00000357368.4:c.1829G>A	p.Arg610Gln	p.R610Q	ENST00000357368	NM_002850.3	610	cGg/cAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5273534	5273534	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1397380294		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	72	425	0	ENST00000357368.4:c.298C>T	p.Arg100Trp	p.R100W	ENST00000357368	NM_002850.3	100	Cgg/Tgg																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	51	398	1	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248521	212248521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	79	504	0	ENST00000342788.4:c.3746C>A	p.Pro1249His	p.P1249H	ENST00000342788	NM_005235.2	1249	cCt/cAt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965809	25965809	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1285225904		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	53	411	0	ENST00000435504.4:c.3397C>T	p.Arg1133Trp	p.R1133W	ENST00000435504		1133	Cgg/Tgg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46587791	46587791	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	50	316	0	ENST00000263734.3:c.475del	p.Ser159AlafsTer12	p.S159Afs*12	ENST00000263734	NM_001430.4	157	Aaa/aa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023733	31023733	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1444168328		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	82	393	1	ENST00000375687.4:c.3218G>A	p.Arg1073His	p.R1073H	ENST00000375687	NM_015338.5	1073	cGc/cAc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384625	31384625	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752929250		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	83	451	0	ENST00000328111.2:c.1327C>T	p.Pro443Ser	p.P443S	ENST00000328111	NM_006892.3	443	Ccc/Tcc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121241	29121241	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781667		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			744	53	378	0	ENST00000328354.6:c.434G>A	p.Arg145Gln	p.R145Q	ENST00000328354	NM_007194.3	145	cGg/cAg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445208	29445209	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	43	452	0	ENST00000544604.2:c.1046_1047del	p.Val349GlyfsTer117	p.V349Gfs*117	ENST00000544604	NM_001206998.1	347	GTg/g																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			815	51	470	4	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
TET2	54790	MSKCC	GRCh37	4	106156748	106156748	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769376786		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	93	477	0	ENST00000380013.4:c.1649G>A	p.Arg550Gln	p.R550Q	ENST00000380013	NM_001127208.2	550	cGa/cAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	69	412	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187527265	187527265	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373448625		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	50	385	0	ENST00000441802.2:c.10309G>A	p.Ala3437Thr	p.A3437T	ENST00000441802	NM_005245.3	3437	Gcg/Acg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538268	187538269	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	53	323	0	ENST00000441802.2:c.8965dup	p.Arg2989LysfsTer12	p.R2989Kfs*12	ENST00000441802	NM_005245.3	2989	agg/aAgg																																																																															
KDR	3791	MSKCC	GRCh37	4	55955965	55955965	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754208569		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	67	360	0	ENST00000263923.4:c.3197G>A	p.Arg1066His	p.R1066H	ENST00000263923	NM_002253.2	1066	cGc/cAc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294664	1294665	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1060502990		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	37	393	1	ENST00000310581.5:c.336dup	p.Glu113ArgfsTer79	p.E113Rfs*79	ENST00000310581	NM_198253.2	112	-/C																																																																															
RAD50	10111	MSKCC	GRCh37	5	131924484	131924484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	62	330	0	ENST00000265335.6:c.1157G>A	p.Gly386Glu	p.G386E	ENST00000265335		386	gGa/gAa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459614	149459614	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	66	375	0	ENST00000286301.3:c.592+1G>A		p.X198_splice	ENST00000286301	NM_005211.3	198																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31410882	31410882	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs899896220		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	53	355	0	ENST00000344624.3:c.3638G>A	p.Arg1213His	p.R1213H	ENST00000344624		1213	cGc/cAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522771	67522771	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141974044		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			743	67	381	0	ENST00000274335.5:c.268C>T	p.Arg90Trp	p.R90W	ENST00000274335		90	Cgg/Tgg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	107	330	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
FYN	2534	MSKCC	GRCh37	6	112020820	112020820	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	68	344	0	ENST00000368678.4:c.751C>A	p.Pro251Thr	p.P251T	ENST00000368678		251	Cca/Aca																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527817	157527817	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			735	59	462	0	ENST00000346085.5:c.5547del	p.Leu1850Ter	p.L1850*	ENST00000346085	NM_020732.3	1848	Ccc/cc																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652044	36652044	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753291170		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	136	478	0	ENST00000244741.5:c.166G>A	p.Glu56Lys	p.E56K	ENST00000244741	NM_000389.4	56	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	44	319	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729612	41729612	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1202073030		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	76	477	0	ENST00000242208.4:c.917G>A	p.Arg306His	p.R306H	ENST00000242208	NM_002192.2	306	cGc/cAc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455076	50455076	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1184423158		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	65	345	0	ENST00000331340.3:c.623G>A	p.Arg208Gln	p.R208Q	ENST00000331340	NM_006060.4	208	cGa/cAa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738508	145738508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770800467		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	41	381	0	ENST00000428558.2:c.2477G>A	p.Arg826Gln	p.R826Q	ENST00000428558	NM_004260.3	826	cGa/cAa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981892	70981892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	60	498	0	ENST00000276594.2:c.204del	p.Phe69SerfsTer10	p.F69Sfs*10	ENST00000276594	NM_024504.3	68	ccC/cc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300040	137300040	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	37	327	0	ENST00000481739.1:c.331del	p.Leu111TrpfsTer57	p.L111Wfs*57	ENST00000481739	NM_002957.4	109	Ccc/cc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139397700	139397700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			747	65	451	0	ENST00000277541.6:c.5101G>A	p.Ala1701Thr	p.A1701T	ENST00000277541	NM_017617.3	1701	Gca/Aca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	122	467	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882058	36882058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141574393		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	124	384	0	ENST00000358127.4:c.955G>A	p.Val319Ile	p.V319I	ENST00000358127	NM_001280556.1	319	Gtc/Atc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36923456	36923456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759434313		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	70	345	0	ENST00000358127.4:c.806C>T	p.Ser269Leu	p.S269L	ENST00000358127	NM_001280556.1	269	tCg/tTg																																																																															
SYK	6850	MSKCC	GRCh37	9	93624492	93624492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	97	354	0	ENST00000375746.1:c.583C>T	p.Arg195Ter	p.R195*	ENST00000375746	NM_001174167.1	195	Cga/Tga																																																																															
SYK	6850	MSKCC	GRCh37	9	93641212	93641212	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200320837		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	43	279	0	ENST00000375746.1:c.1558C>T	p.Arg520Cys	p.R520C	ENST00000375746	NM_001174167.1	520	Cgt/Tgt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188137	11188137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	71	396	0	ENST00000361445.4:c.5957C>T	p.Ala1986Val	p.A1986V	ENST00000361445	NM_004958.3	1986	gCc/gTc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11316059	11316059	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	62	391	0	ENST00000361445.4:c.695A>G	p.Gln232Arg	p.Q232R	ENST00000361445	NM_004958.3	232	cAg/cGg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163325162	163325162	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	55	336	0	ENST00000271452.3:c.1298A>G	p.Tyr433Cys	p.Y433C	ENST00000271452	NM_145697.2	433	tAc/tGc																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366727	40366727	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751842387		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	62	463	0	ENST00000397332.2:c.470C>T	p.Ala157Val	p.A157V	ENST00000397332	NM_001033082.2	157	gCc/gTc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65349062	65349062	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	47	390	0	ENST00000342505.4:c.103G>T	p.Gly35Trp	p.G35W	ENST00000342505	NM_002227.2	35	Ggg/Tgg																																																																															
SUFU	51684	MSKCC	GRCh37	10	104389837	104389837	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	59	347	0	ENST00000369902.3:c.1380A>C	p.Lys460Asn	p.K460N	ENST00000369902	NM_016169.3	460	aaA/aaC																																																																															
RET	5979	MSKCC	GRCh37	10	43600466	43600466	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs79661516		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	63	436	0	ENST00000355710.3:c.692G>A	p.Arg231His	p.R231H	ENST00000355710	NM_020975.4	231	cGc/cAc																																																																															
TET1	80312	MSKCC	GRCh37	10	70405422	70405422	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			855	65	459	0	ENST00000373644.4:c.2936A>G	p.Asn979Ser	p.N979S	ENST00000373644	NM_030625.2	979	aAc/aGc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375201	118375201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			787	47	515	0	ENST00000534358.1:c.8594C>T	p.Ala2865Val	p.A2865V	ENST00000534358	NM_005933.3	2865	gCt/gTt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375354	118375357	+	frameshift_variant	Frame_Shift_Del	DEL	CCTC	CCTC	-			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	73	432	0	ENST00000534358.1:c.8747_8750del	p.Ser2916LeufsTer12	p.S2916Lfs*12	ENST00000534358	NM_005933.3	2916	tCCTCt/tt																																																																															
SESN3	143686	MSKCC	GRCh37	11	94908790	94908790	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	39	309	0	ENST00000536441.1:c.1264T>A	p.Tyr422Asn	p.Y422N	ENST00000536441	NM_144665.3	422	Tat/Aat																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885846	111885846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			789	48	505	0	ENST00000341259.2:c.1468C>T	p.Pro490Ser	p.P490S	ENST00000341259	NM_005475.2	490	Cct/Tct																																																																															
POLE	5426	MSKCC	GRCh37	12	133201525	133201525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	60	421	0	ENST00000320574.5:c.6713G>A	p.Cys2238Tyr	p.C2238Y	ENST00000320574	NM_006231.2	2238	tGc/tAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436690	110436690	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	55	415	0	ENST00000375856.3:c.1711C>A	p.Leu571Met	p.L571M	ENST00000375856	NM_003749.2	571	Ctg/Atg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972522	32972522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	58	428	0	ENST00000380152.3:c.9872C>T	p.Ser3291Phe	p.S3291F	ENST00000380152		3291	tCt/tTt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987089	36987089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	62	349	0	ENST00000354822.5:c.600G>T	p.Gln200His	p.Q200H	ENST00000354822	NM_001079668.2	200	caG/caT																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023250	33023250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	46	414	0	ENST00000300177.4:c.359G>A	p.Gly120Asp	p.G120D	ENST00000300177	NM_001191322.1	120	gGc/gAc																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51514707	51514707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	79	343	0	ENST00000260433.2:c.467G>A	p.Gly156Asp	p.G156D	ENST00000260433		156	gGc/gAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134511	2134511	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	47	483	0	ENST00000219476.3:c.4288T>G	p.Trp1430Gly	p.W1430G	ENST00000219476	NM_000548.3	1430	Tgg/Ggg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134593	2134593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			716	67	510	0	ENST00000219476.3:c.4370G>A	p.Arg1457Gln	p.R1457Q	ENST00000219476	NM_000548.3	1457	cGg/cAg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2220666	2220666	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	84	405	0	ENST00000326181.6:c.283C>A	p.Leu95Met	p.L95M	ENST00000326181	NM_032271.2	95	Ctg/Atg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942091	81942091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	80	421	0	ENST00000359376.3:c.1628C>T	p.Ala543Val	p.A543V	ENST00000359376	NM_002661.3	543	gCc/gTc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11924268	11924269	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	60	495	0	ENST00000353533.5:c.69dup	p.Val24ArgfsTer17	p.V24Rfs*17	ENST00000353533	NM_003010.3	22	ggc/ggCc																																																																															
NF1	4763	MSKCC	GRCh37	17	29665762	29665762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	70	320	0	ENST00000358273.4:c.6860G>A	p.Ser2287Asn	p.S2287N	ENST00000358273	NM_001042492.2	2287	aGt/aAt																																																																															
BCL2	596	MSKCC	GRCh37	18	60985338	60985338	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	66	393	0	ENST00000333681.4:c.562T>C	p.Trp188Arg	p.W188R	ENST00000333681		188	Tgg/Cgg																																																																															
YES1	7525	MSKCC	GRCh37	18	743016	743016	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	55	357	0	ENST00000314574.4:c.962C>A	p.Ala321Asp	p.A321D	ENST00000314574	NM_005433.3	321	gCt/gAt																																																																															
CALR	811	MSKCC	GRCh37	19	13050329	13050329	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			742	55	408	0	ENST00000316448.5:c.281A>C	p.Gln94Pro	p.Q94P	ENST00000316448	NM_004343.3	94	cAg/cCg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18963848	18963848	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	48	352	0	ENST00000262803.5:c.1025T>C	p.Ile342Thr	p.I342T	ENST00000262803	NM_002911.3	342	aTc/aCc																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731535	47731536	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	26	317	0	ENST00000449228.1:c.256dup	p.His86ProfsTer164	p.H86Pfs*164	ENST00000449228	NM_001127240.2	86	cac/cCac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566724	212566724	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			778	69	372	0	ENST00000342788.4:c.1457T>A	p.Val486Glu	p.V486E	ENST00000342788	NM_005235.2	486	gTa/gAa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663088	227663088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	56	390	0	ENST00000305123.5:c.367G>A	p.Gly123Arg	p.G123R	ENST00000305123	NM_005544.2	123	Gga/Aga																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445560	29445560	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	64	457	0	ENST00000544604.2:c.1391A>G	p.Gln464Arg	p.Q464R	ENST00000544604	NM_001206998.1	464	cAg/cGg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200715	128200715	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766504293		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	35	328	0	ENST00000341105.2:c.1090G>A	p.Ala364Thr	p.A364T	ENST00000341105	NM_032638.4	364	Gcc/Acc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187522479	187522479	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	44	297	0	ENST00000441802.2:c.11584T>C	p.Tyr3862His	p.Y3862H	ENST00000441802	NM_005245.3	3862	Tat/Cat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187535434	187535434	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	50	356	1	ENST00000441802.2:c.9140C>A	p.Ala3047Asp	p.A3047D	ENST00000441802	NM_005245.3	3047	gCt/gAt																																																																															
FYN	2534	MSKCC	GRCh37	6	112025304	112025304	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	38	316	0	ENST00000368678.4:c.445T>C	p.Trp149Arg	p.W149R	ENST00000368678		149	Tgg/Cgg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117647452	117647452	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	56	416	0	ENST00000368508.3:c.5492T>C	p.Val1831Ala	p.V1831A	ENST00000368508	NM_002944.2	1831	gTa/gCa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032269	26032269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	58	388	0	ENST00000244661.2:c.20C>T	p.Thr7Ile	p.T7I	ENST00000244661	NM_003537.3	7	aCa/aTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151919107	151919107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	35	254	0	ENST00000262189.6:c.3478G>A	p.Val1160Ile	p.V1160I	ENST00000262189	NM_170606.2	1160	Gtc/Atc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976687	2976687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	45	350	0	ENST00000396946.4:c.1325G>T	p.Ser442Ile	p.S442I	ENST00000396946	NM_032415.4	442	aGc/aTc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141570506	141570506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	66	444	0	ENST00000220592.5:c.622C>T	p.Pro208Ser	p.P208S	ENST00000220592	NM_012154.3	208	Cct/Tct																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864660	68864660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	45	241	0	ENST00000288368.4:c.31G>A	p.Ala11Thr	p.A11T	ENST00000288368	NM_024870.2	11	Gcc/Acc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137293720	137293720	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	37	348	1	ENST00000481739.1:c.271A>G	p.Ser91Gly	p.S91G	ENST00000481739	NM_002957.4	91	Agc/Ggc																																																																															
TEK	7010	MSKCC	GRCh37	9	27192601	27192601	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769524871		P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	38	353	0	ENST00000380036.4:c.1604G>A	p.Arg535His	p.R535H	ENST00000380036	NM_000459.3	535	cGc/cAc																																																																															
SYK	6850	MSKCC	GRCh37	9	93606253	93606253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	36	386	0	ENST00000375746.1:c.73G>A	p.Ala25Thr	p.A25T	ENST00000375746	NM_001174167.1	25	Gca/Aca																																																																															
AR	367	MSKCC	GRCh37	X	66931293	66931293	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	56	456	0	ENST00000374690.3:c.1935G>T	p.Glu645Asp	p.E645D	ENST00000374690	NM_000044.3	645	gaG/gaT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0079683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	50	217	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0079683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	744	446	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0079683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			40	61	127	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149509379	149509379	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145823245		P-0079683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			915	182	488	0	ENST00000261799.4:c.1520G>A	p.Arg507His	p.R507H	ENST00000261799	NM_002609.3	507	cGc/cAc																																																																															
RB1	5925	MSKCC	GRCh37	13	48939032	48939033	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	138	229	0	ENST00000267163.4:c.869dup	p.Asn290LysfsTer20	p.N290Kfs*20	ENST00000267163	NM_000321.2	288	-/A																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242481	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAGCAA	TTAAGAGAAGCAA	C	rs397509368		P-0079683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	510	368	0	ENST00000275493.2:c.2239_2251delinsC	p.Leu747_Thr751delinsPro	p.L747_T751delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAAca/Cca																																																																															
RB1	5925	MSKCC	GRCh37	13	48939042	48939042	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	22	222	0	ENST00000267163.4:c.874T>C	p.Tyr292His	p.Y292H	ENST00000267163	NM_000321.2	292	Tat/Cat																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94067998	94067998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	38	346	0	ENST00000369303.4:c.964G>A	p.Asp322Asn	p.D322N	ENST00000369303	NM_004440.3	322	Gac/Aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0079687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	53	283	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519925		P-0079687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	46	302	0	ENST00000263967.3:c.1357G>C	p.Glu453Gln	p.E453Q	ENST00000263967	NM_006218.2	453	Gaa/Caa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141492	11141492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	35	391	0	ENST00000344626.4:c.3469C>T	p.Arg1157Trp	p.R1157W	ENST00000344626	NM_003072.3	1157	Cgg/Tgg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62319000	62319000	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	T	T	G			P-0079687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	40	390	0	ENST00000482936.1:c.1358T>G	p.Leu453Arg	p.L453R	ENST00000482936		453	cTg/cGg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200050	128200050	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0079687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	52	486	0	ENST00000341105.2:c.1255A>T	p.Lys419Ter	p.K419*	ENST00000341105	NM_032638.4	419	Aag/Tag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449733	8449733	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	42	267	0	ENST00000356435.5:c.3980A>G	p.Gln1327Arg	p.Q1327R	ENST00000356435		1327	cAa/cGa																																																																															
ATRX	546	MSKCC	GRCh37	X	76776922	76776922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	37	276	0	ENST00000373344.5:c.7030G>A	p.Ala2344Thr	p.A2344T	ENST00000373344	NM_000489.3	2344	Gca/Aca																																																																															
PALB2	79728	MSKCC	GRCh37	16	23634395	23634395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	341	353	0	ENST00000261584.4:c.2891G>T	p.Gly964Val	p.G964V	ENST00000261584	NM_024675.3	964	gGa/gTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0079689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	182	441	0	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0079689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	181	354	0	ENST00000269305.4:c.673-2A>C		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
EPHA7	2045	MSKCC	GRCh37	6	94066711	94066711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	75	441	0	ENST00000369303.4:c.1048G>A	p.Glu350Lys	p.E350K	ENST00000369303	NM_004440.3	350	Gaa/Aaa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026605	48026605	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779212		P-0079689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	91	437	0	ENST00000234420.5:c.1483C>T	p.Arg495Ter	p.R495*	ENST00000234420	NM_000179.2	495	Cga/Tga																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47607074	47607074	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	127	408	0	ENST00000263735.4:c.824T>C	p.Val275Ala	p.V275A	ENST00000263735	NM_002354.2	275	gTg/gCg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68984728	68984729	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0079689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	105	330	0	ENST00000288368.4:c.1495_1496del		p.X499_splice	ENST00000288368	NM_024870.2	499																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8389254	8389254	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	52	266	0	ENST00000356435.5:c.4364C>G	p.Thr1455Arg	p.T1455R	ENST00000356435		1455	aCa/aGa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95578508	95578508	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0079689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	211	310	0	ENST00000343455.3:c.2116+1G>T		p.X706_splice	ENST00000343455	NM_177438.2	706																																																																																
NTRK3	4916	MSKCC	GRCh37	15	88420213	88420213	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	118	406	0	ENST00000360948.2:c.2473del	p.His825MetfsTer22	p.H825Mfs*22	ENST00000360948	NM_001012338.2	825	Cat/at																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467164	99467164	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0079689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	218	323	0	ENST00000268035.6:c.2545T>G	p.Phe849Val	p.F849V	ENST00000268035	NM_000875.3	849	Ttt/Gtt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187522500	187522500	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	30	421	0	ENST00000441802.2:c.11563C>G	p.Leu3855Val	p.L3855V	ENST00000441802	NM_005245.3	3855	Ctg/Gtg																																																																															
APLNR	187	MSKCC	GRCh37	11	57004131	57004131	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	T			P-0079689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	92	439	0	ENST00000257254.3:c.348C>A	p.Ser116Arg	p.S116R	ENST00000257254		116	agC/agA																																																																															
APLNR	187	MSKCC	GRCh37	11	57004131	57004131	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	C			P-0079689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	102	439	0	ENST00000257254.3:c.348C>G	p.Ser116Arg	p.S116R	ENST00000257254		116	agC/agG																																																																															
E2F3	1871	MSKCC	GRCh37	6	20488410	20488410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	89	413	0	ENST00000346618.3:c.1066G>A	p.Glu356Lys	p.E356K	ENST00000346618	NM_001949.4	356	Gaa/Aaa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651493	52651493	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0079689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	178	475	0	ENST00000394830.3:c.1603G>T	p.Glu535Ter	p.E535*	ENST00000394830	NM_018313.4	535	Gag/Tag																																																																															
ALK	238	MSKCC	GRCh37	2	29451795	29451795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	63	155	0	ENST00000389048.3:c.2770G>A	p.Gly924Ser	p.G924S	ENST00000389048	NM_004304.4	924	Ggt/Agt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105525	11105525	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	225	405	0	ENST00000344626.4:c.1441C>T	p.Gln481Ter	p.Q481*	ENST00000344626	NM_003072.3	481	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0079722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	49	305	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8524949	8524949	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs771217760		P-0079722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	23	313	0	ENST00000356435.5:c.655G>T	p.Ala219Ser	p.A219S	ENST00000356435		219	Gct/Tct																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42840355	42840355	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	82	458	0	ENST00000398585.3:c.1393G>T	p.Gly465Cys	p.G465C	ENST00000398585	NM_001135099.1	465	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579505	7579514	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGGACCTG	TCTGGACCTG	-			P-0079722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	110	614	0	ENST00000269305.4:c.173_182del	p.Pro58LeufsTer62	p.P58Lfs*62	ENST00000269305	NM_001126112.2	58	cCAGGTCCAGAt/ct																																																																															
KDM5A	5927	MSKCC	GRCh37	12	442698	442729	+	frameshift_variant	Frame_Shift_Del	DEL	TAACTGATGCAGAAGATCAGGCTGGGATTCAA	TAACTGATGCAGAAGATCAGGCTGGGATTCAA	CAAC			P-0079722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	124	515	3	ENST00000399788.2:c.1577_1608delinsGTTG	p.Phe526CysfsTer6	p.F526Cfs*6	ENST00000399788	NM_001042603.1	526	tTTGAATCCCAGCCTGATCTTCTGCATCAGTTA/tGTTG																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372425	55372425	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	159	552	0	ENST00000297316.4:c.1115A>T	p.Lys372Met	p.K372M	ENST00000297316	NM_022454.3	372	aAg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432278	49432278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	127	632	0	ENST00000301067.7:c.8861G>T	p.Gly2954Val	p.G2954V	ENST00000301067	NM_003482.3	2954	gGt/gTt																																																																															
SMO	6608	MSKCC	GRCh37	7	128851484	128851484	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	95	466	0	ENST00000249373.3:c.1809G>T	p.Leu603Phe	p.L603F	ENST00000249373	NM_005631.4	603	ttG/ttT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0079727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	26	537	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0079727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	15	358	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729984	30729990	+	frameshift_variant	Frame_Shift_Del	DEL	GCTTCTG	GCTTCTG	-			P-0079727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	23	477	0	ENST00000359013.4:c.1583_1589del	p.Phe528SerfsTer13	p.F528Sfs*13	ENST00000359013	NM_001024847.2	527	aGCTTCTGg/ag																																																																															
ERG	2078	MSKCC	GRCh37	21	39755518	39755518	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760527652		P-0079742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	49	460	1	ENST00000288319.7:c.1247C>T	p.Pro416Leu	p.P416L	ENST00000288319	NM_182918.3	416	cCg/cTg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061313	38061313	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1204900727		P-0079742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	71	409	0	ENST00000250448.2:c.676G>A	p.Asp226Asn	p.D226N	ENST00000250448	NM_004496.3	226	Gac/Aac																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165418	47165419	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	51	379	0	ENST00000409792.3:c.707_708insT	p.Arg236SerfsTer20	p.R236Sfs*20	ENST00000409792	NM_014159.6	236	aga/agTa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061182	38061185	+	frameshift_variant	Frame_Shift_Del	DEL	CTCG	CTCG	-			P-0079742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	49	335	0	ENST00000250448.2:c.804_807del	p.Cys268Ter	p.C268*	ENST00000250448	NM_004496.3	268	tgCGAG/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0079746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	138	362	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0079747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	138	317	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045006	47045006	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	148	431	0	ENST00000329236.7:c.2098C>T	p.Gln700Ter	p.Q700*	ENST00000329236	NM_001204466.1	700	Cag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42042476	42042477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	144	401	0	ENST00000219905.7:c.6672dup	p.Leu2225ThrfsTer8	p.L2225Tfs*8	ENST00000219905	NM_001164273.1	2224	tta/ttAa																																																																															
ATM	472	MSKCC	GRCh37	11	108216584	108216584	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	114	273	0	ENST00000278616.4:c.8533T>C	p.Trp2845Arg	p.W2845R	ENST00000278616	NM_000051.3	2845	Tgg/Cgg																																																																															
MSH3	4437	MSKCC	GRCh37	5	80109421	80109421	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	114	253	0	ENST00000265081.6:c.2674A>T	p.Met892Leu	p.M892L	ENST00000265081	NM_002439.4	892	Atg/Ttg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509124	66509124	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	19	255	0	ENST00000273854.3:c.203C>A	p.Thr68Asn	p.T68N	ENST00000273854	NM_004439.5	68	aCt/aAt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047995	180047995	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762560832		P-0079757-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	53	830	0	ENST00000261937.6:c.2180C>T	p.Ala727Val	p.A727V	ENST00000261937	NM_182925.4	727	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0079757-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	116	551	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515232	149515232	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80162387		P-0079757-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	60	878	0	ENST00000261799.4:c.250G>A	p.Val84Met	p.V84M	ENST00000261799	NM_002609.3	84	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380276	+	missense_variant	Missense_Mutation	DNP	TT	TT	GC			P-0079757-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	136	517	1	ENST00000256078.4:c.182_183delinsGC	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAA/cGC																																																																															
IRF4	3662	MSKCC	GRCh37	6	393358	393358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079757-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	34	449	0	ENST00000380956.4:c.206C>T	p.Ala69Val	p.A69V	ENST00000380956	NM_001195286.1	69	gCg/gTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448324	56448353	+	inframe_deletion	In_Frame_Del	DEL	TTGACGATGCTGATGAATCCAGGCTCCAGA	TTGACGATGCTGATGAATCCAGGCTCCAGA	-			P-0079757-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	139	746	0	ENST00000407977.2:c.294_323del	p.Asn98_Val107del	p.N98_V107del	ENST00000407977		98	aaTCTGGAGCCTGGATTCATCAGCATCGTCAAg/aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1293453	1293453	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079757-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	100	587	0	ENST00000310581.5:c.1548C>A	p.Asp516Glu	p.D516E	ENST00000310581	NM_198253.2	516	gaC/gaA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411291	63411291	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1408150272		P-0079759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	353	717	0	ENST00000330258.3:c.1876C>T	p.Arg626Ter	p.R626*	ENST00000330258	NM_152424.3	626	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112176008	112176008	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0079759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	122	463	1	ENST00000257430.4:c.4717G>T	p.Glu1573Ter	p.E1573*	ENST00000257430	NM_000038.5	1573	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs786201057		P-0079759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	250	451	0	ENST00000269305.4:c.374C>A	p.Thr125Lys	p.T125K	ENST00000269305	NM_001126112.2	125	aCg/aAg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187847	11187847	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	321	457	0	ENST00000361445.4:c.6050T>C	p.Ile2017Thr	p.I2017T	ENST00000361445	NM_004958.3	2017	aTc/aCc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984364	201984365	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0079759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	113	489	0	ENST00000359651.3:c.1030dup	p.Arg344ProfsTer127	p.R344Pfs*127	ENST00000359651		343	-/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398280	25398281	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0079759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	66	330	0	ENST00000256078.4:c.38_39delinsAA	p.Gly13Glu	p.G13E	ENST00000256078	NM_033360.2	13	gGC/gAA																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355385	15355385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	71	476	0	ENST00000263377.2:c.2238G>A	p.Met746Ile	p.M746I	ENST00000263377	NM_058243.2	746	atG/atA																																																																															
APC	324	MSKCC	GRCh37	5	112174332	112174333	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0079759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	150	538	0	ENST00000257430.4:c.3043dup	p.Asp1015GlyfsTer2	p.D1015Gfs*2	ENST00000257430	NM_000038.5	1014	atg/atGg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	463384	463384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	59	359	0	ENST00000399788.2:c.887G>A	p.Cys296Tyr	p.C296Y	ENST00000399788	NM_001042603.1	296	tGt/tAt																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150902588	150902588	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	74	372	0	ENST00000271640.5:c.406G>C	p.Asp136His	p.D136H	ENST00000271640	NM_001145415.1	136	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	194	606	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81335628	81335628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	114	344	0	ENST00000222390.5:c.1732G>T	p.Asp578Tyr	p.D578Y	ENST00000222390	NM_000601.4	578	Gat/Tat																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109770	115109770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	233	535	0	ENST00000257566.3:c.2108C>T	p.Ser703Phe	p.S703F	ENST00000257566	NM_016569.3	703	tCc/tTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223994	36223994	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			848	358	646	0	ENST00000222270.7:c.6544G>C	p.Glu2182Gln	p.E2182Q	ENST00000222270	NM_014727.1	2182	Gag/Cag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670811	134670811	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	65	447	0	ENST00000398015.3:c.722A>G	p.Asn241Ser	p.N241S	ENST00000398015	NM_004441.4	241	aAc/aGc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609880	81609880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	113	584	0	ENST00000298171.2:c.1478G>A	p.Gly493Glu	p.G493E	ENST00000298171	NM_000369.2	493	gGg/gAg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509880	106509880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	73	489	0	ENST00000359195.3:c.1874G>A	p.Gly625Glu	p.G625E	ENST00000359195	NM_002649.2	625	gGg/gAg																																																																															
YAP1	10413	MSKCC	GRCh37	11	101984938	101984938	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	123	259	0	ENST00000282441.5:c.385C>G	p.Pro129Ala	p.P129A	ENST00000282441	NM_001130145.2	129	Cca/Gca																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838399	156838399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	293	588	0	ENST00000524377.1:c.677G>T	p.Gly226Val	p.G226V	ENST00000524377	NM_002529.3	226	gGc/gTc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223016	53223016	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	180	206	0	ENST00000375401.3:c.4056G>T	p.Glu1352Asp	p.E1352D	ENST00000375401	NM_004187.3	1352	gaG/gaT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056823	180056823	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	128	515	0	ENST00000261937.6:c.689A>G	p.Tyr230Cys	p.Y230C	ENST00000261937	NM_182925.4	230	tAt/tGt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739391	145739391	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	68	506	1	ENST00000428558.2:c.1979A>G	p.Glu660Gly	p.E660G	ENST00000428558	NM_004260.3	660	gAa/gGa																																																																															
BLM	641	MSKCC	GRCh37	15	91354444	91354444	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	186	471	0	ENST00000355112.3:c.3884G>C	p.Ser1295Thr	p.S1295T	ENST00000355112	NM_000057.2	1295	aGt/aCt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52598066	52598066	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	159	424	0	ENST00000394830.3:c.3800G>T	p.Arg1267Ile	p.R1267I	ENST00000394830	NM_018313.4	1267	aGa/aTa																																																																															
RET	5979	MSKCC	GRCh37	10	43613908	43613908	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	74	429	0	ENST00000355710.3:c.2372A>G	p.Tyr791Cys	p.Y791C	ENST00000355710	NM_020975.4	791	tAt/tGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56171063	56171063	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	233	474	0	ENST00000399503.3:c.1891G>T	p.Val631Leu	p.V631L	ENST00000399503	NM_005921.1	631	Gtg/Ttg																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182666	38182666	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	174	499	0	ENST00000396334.3:c.819G>T	p.Met273Ile	p.M273I	ENST00000396334	NM_002468.4	273	atG/atT																																																																															
PMS1	5378	MSKCC	GRCh37	2	190670475	190670475	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	60	379	0	ENST00000441310.2:c.413G>C	p.Gly138Ala	p.G138A	ENST00000441310	NM_000534.4	138	gGt/gCt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508783	106508783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	90	549	0	ENST00000359195.3:c.777G>T	p.Met259Ile	p.M259I	ENST00000359195	NM_002649.2	259	atG/atT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118362024	118362024	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	221	381	0	ENST00000534358.1:c.4810G>T	p.Gly1604Cys	p.G1604C	ENST00000534358	NM_005933.3	1604	Ggt/Tgt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11297983	11297983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	166	529	0	ENST00000361445.4:c.2125G>A	p.Glu709Lys	p.E709K	ENST00000361445	NM_004958.3	709	Gag/Aag																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805423	46805423	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	117	563	0	ENST00000290295.7:c.533G>T	p.Trp178Leu	p.W178L	ENST00000290295	NM_006361.5	178	tGg/tTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8436659	8436659	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	70	406	0	ENST00000356435.5:c.4019T>A	p.Leu1340Ter	p.L1340*	ENST00000356435		1340	tTg/tAg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978678	70978678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	301	518	0	ENST00000276594.2:c.975G>A	p.Met325Ile	p.M325I	ENST00000276594	NM_024504.3	325	atG/atA																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81939020	81939020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	141	461	0	ENST00000359376.3:c.1375G>T	p.Gly459Cys	p.G459C	ENST00000359376	NM_002661.3	459	Ggc/Tgc																																																																															
POT1	25913	MSKCC	GRCh37	7	124503566	124503566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	171	421	0	ENST00000357628.3:c.384G>T	p.Glu128Asp	p.E128D	ENST00000357628	NM_015450.2	128	gaG/gaT																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056035	26056035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	151	471	0	ENST00000343677.2:c.622G>A	p.Ala208Thr	p.A208T	ENST00000343677	NM_005319.3	208	Gcg/Acg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598223	28598224	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	87	512	0	ENST00000253063.3:c.195_196delinsTT	p.Gly66Trp	p.G66W	ENST00000253063	NM_031459.4	65	ctGGgg/ctTTgg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21347105	21347105	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	179	488	0	ENST00000215739.8:c.1172A>C	p.His391Pro	p.H391P	ENST00000215739	NM_006767.3	391	cAc/cCc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984418	201984418	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	274	518	0	ENST00000359651.3:c.1083G>T	p.Trp361Cys	p.W361C	ENST00000359651		361	tgG/tgT																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420203	88420204	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	63	456	0	ENST00000360948.2:c.2482_2483delinsTT	p.Gly828Leu	p.G828L	ENST00000360948	NM_001012338.2	828	GGg/TTg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50358698	50358698	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	53	340	0	ENST00000331340.3:c.40+1G>C		p.X14_splice	ENST00000331340	NM_006060.4	14																																																																																
IGF1R	3480	MSKCC	GRCh37	15	99500602	99500612	+	frameshift_variant	Frame_Shift_Del	DEL	TTACGCCCACA	TTACGCCCACA	-			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	149	469	0	ENST00000268035.6:c.4036_4046del	p.Tyr1346GlufsTer24	p.Y1346Efs*24	ENST00000268035	NM_000875.3	1345	ccTTACGCCCACAtg/cctg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401028	139401028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	98	497	1	ENST00000277541.6:c.3965G>A	p.Cys1322Tyr	p.C1322Y	ENST00000277541	NM_017617.3	1322	tGc/tAc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981641	70981641	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	203	593	0	ENST00000276594.2:c.455C>G	p.Pro152Arg	p.P152R	ENST00000276594	NM_024504.3	152	cCg/cGg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644967	67644967	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	200	576	0	ENST00000264010.4:c.232A>G	p.Met78Val	p.M78V	ENST00000264010	NM_006565.3	78	Atg/Gtg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053129	180053129	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	54	636	0	ENST00000261937.6:c.1240C>A	p.Leu414Met	p.L414M	ENST00000261937	NM_182925.4	414	Ctg/Atg																																																																															
SYK	6850	MSKCC	GRCh37	9	93641090	93641090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	88	430	0	ENST00000375746.1:c.1436C>A	p.Ser479Tyr	p.S479Y	ENST00000375746	NM_001174167.1	479	tCc/tAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356423	66356424	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	72	456	0	ENST00000273854.3:c.1073_1074del	p.Pro358LeufsTer11	p.P358Lfs*11	ENST00000273854	NM_004439.5	358	cCC/c																																																																															
CARD11	84433	MSKCC	GRCh37	7	2949800	2949800	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	301	355	0	ENST00000396946.4:c.3145-1G>C		p.X1049_splice	ENST00000396946	NM_032415.4	1049																																																																																
PAX5	5079	MSKCC	GRCh37	9	36840628	36840628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	87	467	0	ENST00000358127.4:c.1105C>A	p.Pro369Thr	p.P369T	ENST00000358127	NM_001280556.1	369	Ccc/Acc																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551666	150551666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1196	68	557	0	ENST00000369026.2:c.341C>T	p.Pro114Leu	p.P114L	ENST00000369026	NM_021960.4	114	cCg/cTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097621	27097622	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	86	421	0	ENST00000324856.7:c.3216dup	p.Trp1073MetfsTer32	p.W1073Mfs*32	ENST00000324856	NM_006015.4	1070	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0079791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	68	499	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0079791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	43	256	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023173	27023186	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCGGCGCGGAGC	GCCCGGCGCGGAGC	-			P-0079791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	68	386	0	ENST00000324856.7:c.279_292del	p.Pro94GlyfsTer12	p.P94Gfs*12	ENST00000324856	NM_006015.4	93	ggGCCCGGCGCGGAGCcg/ggcg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581181	48581182	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GG			P-0079791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	63	352	0	ENST00000342988.3:c.485_486insGG	p.Tyr162Ter	p.Y162*	ENST00000342988	NM_005359.5	162	tat/taGGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0079792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	177	385	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245279	41245279	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs80357583		P-0079792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	233	477	1	ENST00000357654.3:c.2269del	p.Val757PhefsTer8	p.V757Ffs*8	ENST00000357654	NM_007294.3	757	Gtt/tt																																																																															
CD79A	973	MSKCC	GRCh37	19	42383709	42383729	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGCTGCTGTTCAGGGTGAGC	CTGCTGCTGTTCAGGGTGAGC	-			P-0079792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	63	472	0	ENST00000221972.3:c.485_498+7del		p.X162_splice	ENST00000221972	NM_021601.3	162																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67591062	67591085	+	inframe_deletion	In_Frame_Del	DEL	AGGCAGCTGAGTATCGAGAAATTG	AGGCAGCTGAGTATCGAGAAATTG	-			P-0079792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	43	396	0	ENST00000274335.5:c.1656_1679del	p.Gln552_Asp560delinsHis	p.Q552_D560delinsH	ENST00000274335		552	cAGGCAGCTGAGTATCGAGAAATTGac/cac																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799761	72799761	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	127	486	0	ENST00000325599.8:c.1408G>C	p.Asp470His	p.D470H	ENST00000325599	NM_018130.2	470	Gac/Cac																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0079793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	181	599	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057520000		P-0079793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	158	612	0	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0079793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	152	315	0	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873999	151873999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	58	532	0	ENST00000262189.6:c.8539G>A	p.Asp2847Asn	p.D2847N	ENST00000262189	NM_170606.2	2847	Gat/Aat																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40678658	40678658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs887498544		P-0079793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	74	448	0	ENST00000249776.8:c.400G>A	p.Asp134Asn	p.D134N	ENST00000249776	NM_033286.3	134	Gat/Aat																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243854	41243854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	360	468	0	ENST00000357654.3:c.3694G>T	p.Gly1232Cys	p.G1232C	ENST00000357654	NM_007294.3	1232	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579362	7579362	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057523496		P-0079867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	304	513	0	ENST00000269305.4:c.325T>G	p.Phe109Val	p.F109V	ENST00000269305	NM_001126112.2	109	Ttc/Gtc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220644	1220644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1167609100		P-0079867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			69	223	424	0	ENST00000326873.7:c.662C>T	p.Pro221Leu	p.P221L	ENST00000326873	NM_000455.4	221	cCg/cTg																																																																															
ACVR1	90	MSKCC	GRCh37	2	158634746	158634746	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373187352		P-0079867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	334	438	0	ENST00000263640.3:c.440G>A	p.Arg147Gln	p.R147Q	ENST00000263640	NM_001105.4	147	cGa/cAa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371947	55371947	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	80	421	0	ENST00000297316.4:c.637C>G	p.Pro213Ala	p.P213A	ENST00000297316	NM_022454.3	213	Ccg/Gcg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849884	156849884	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	53	394	0	ENST00000524377.1:c.2140G>C	p.Gly714Arg	p.G714R	ENST00000524377	NM_002529.3	714	Ggc/Cgc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998231	100998231	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	198	365	0	ENST00000325455.5:c.1571G>T	p.Gly524Val	p.G524V	ENST00000325455	NM_001202474.3	524	gGc/gTc																																																																															
ATM	472	MSKCC	GRCh37	11	108117828	108117828	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0079867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	241	346	0	ENST00000278616.4:c.1039G>T	p.Glu347Ter	p.E347*	ENST00000278616	NM_000051.3	347	Gaa/Taa																																																																															
MSI1	4440	MSKCC	GRCh37	12	120805822	120805822	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	143	423	0	ENST00000257552.2:c.256G>T	p.Asp86Tyr	p.D86Y	ENST00000257552	NM_002442.3	86	Gac/Tac																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046509	30046509	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0079867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			777	91	406	0	ENST00000331968.5:c.2674A>C	p.Ser892Arg	p.S892R	ENST00000331968	NM_002742.2	892	Agt/Cgt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534366	63534366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	84	542	0	ENST00000307078.5:c.1155G>C	p.Leu385Phe	p.L385F	ENST00000307078	NM_004655.3	385	ttG/ttC																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40828009	40828009	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	76	403	0	ENST00000373198.4:c.2419A>G	p.Lys807Glu	p.K807E	ENST00000373198	NM_133170.3	807	Aag/Gag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190466	32190476	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGAGCCCTA	GGGGAGCCCTA	-			P-0079867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	99	533	0	ENST00000375023.3:c.263_273del	p.Leu88GlnfsTer21	p.L88Qfs*21	ENST00000375023	NM_004557.3	88	cTAGGGCTCCCC/c																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0079480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	110	363	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
APC	324	MSKCC	GRCh37	5	112173926	112173926	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1060503287		P-0079480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	141	423	1	ENST00000257430.4:c.2635C>T	p.Gln879Ter	p.Q879*	ENST00000257430	NM_000038.5	879	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573537	48573537	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0079480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	80	441	0	ENST00000342988.3:c.121G>T	p.Glu41Ter	p.E41*	ENST00000342988	NM_005359.5	41	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0079480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	88	238	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	330	409	0	ENST00000269305.4:c.337T>A	p.Phe113Ile	p.F113I	ENST00000269305	NM_001126112.2	113	Ttc/Atc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295808	1295808	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0079480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	163	517	0				ENST00000310581	NM_198253.2																																																																																	
NCOR1	9611	MSKCC	GRCh37	17	16055311	16055311	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0079480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	84	181	0	ENST00000268712.3:c.791C>T	p.Pro264Leu	p.P264L	ENST00000268712	NM_006311.3	264	cCa/cTa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522598	157522598	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	228	681	2	ENST00000346085.5:c.4870C>T	p.Arg1624Ter	p.R1624*	ENST00000346085	NM_020732.3	1624	Cga/Tga																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231783	36231783	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1057519748		P-0024465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	251	765	1	ENST00000300305.3:c.601C>T	p.Arg201Ter	p.R201*	ENST00000300305		201	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482425	56482425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	207	556	0	ENST00000267101.3:c.973G>A	p.Gly325Arg	p.G325R	ENST00000267101	NM_001982.3	325	Gga/Aga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101273	27101273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	220	640	1	ENST00000324856.7:c.4555C>T	p.Gln1519Ter	p.Q1519*	ENST00000324856	NM_006015.4	1519	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878530	151878530	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1396109953		P-0024465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	229	707	0	ENST00000262189.6:c.6415C>T	p.Arg2139Ter	p.R2139*	ENST00000262189	NM_170606.2	2139	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106211	27106566	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGCATTAGCCCAGCACAGAGCCACCGGAACATCAAGATCCTAGAGGACGAACCCCACAGTAAGGATGAGACCCCACTGTGTACCCTTCTGGACTGGCAGGATTCTCTTGCCAAGCGCTGCGTCTGTGTGTCCAATACCATTCGAAGCCTGTCATTTGTGCCAGGCAATGACTTTGAGATGTCCAAACACCCAGGGCTGCTGCTCATCCTGGGCAAGCTGATCCTGCTGCACCACAAGCACCCAGAACGGAAGCAGGCACCACTAACTTATGAAAAGGAGGAGGAACAGGACCAAGGGGTGAGCTGCAACAAAGTGGAGTGGTGGTGGGACTGCTTGGAGATGCTCCGGGAAAAC	TTGGCATTAGCCCAGCACAGAGCCACCGGAACATCAAGATCCTAGAGGACGAACCCCACAGTAAGGATGAGACCCCACTGTGTACCCTTCTGGACTGGCAGGATTCTCTTGCCAAGCGCTGCGTCTGTGTGTCCAATACCATTCGAAGCCTGTCATTTGTGCCAGGCAATGACTTTGAGATGTCCAAACACCCAGGGCTGCTGCTCATCCTGGGCAAGCTGATCCTGCTGCACCACAAGCACCCAGAACGGAAGCAGGCACCACTAACTTATGAAAAGGAGGAGGAACAGGACCAAGGGGTGAGCTGCAACAAAGTGGAGTGGTGGTGGGACTGCTTGGAGATGCTCCGGGAAAAC	-			P-0024465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	201	631	1	ENST00000324856.7:c.5822_6177del	p.Phe1941TyrfsTer39	p.F1941Yfs*39	ENST00000324856	NM_006015.4	1941	tTTGGCATTAGCCCAGCACAGAGCCACCGGAACATCAAGATCCTAGAGGACGAACCCCACAGTAAGGATGAGACCCCACTGTGTACCCTTCTGGACTGGCAGGATTCTCTTGCCAAGCGCTGCGTCTGTGTGTCCAATACCATTCGAAGCCTGTCATTTGTGCCAGGCAATGACTTTGAGATGTCCAAACACCCAGGGCTGCTGCTCATCCTGGGCAAGCTGATCCTGCTGCACCACAAGCACCCAGAACGGAAGCAGGCACCACTAACTTATGAAAAGGAGGAGGAACAGGACCAAGGGGTGAGCTGCAACAAAGTGGAGTGGTGGTGGGACTGCTTGGAGATGCTCCGGGAAAAC/t																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226769	2226769	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761386617		P-0024465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	256	726	0	ENST00000398665.3:c.4249G>A	p.Glu1417Lys	p.E1417K	ENST00000398665	NM_032482.2	1417	Gag/Aag																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128047034	128047034	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1249110579		P-0024465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	210	641	1	ENST00000285398.2:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000285398	NM_000122.1	234	cGa/cAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247280	153247280	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	203	448	0	ENST00000281708.4:c.1522C>T	p.Gln508Ter	p.Q508*	ENST00000281708	NM_033632.3	508	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112111372	112111373	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0024465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	83	307	0	ENST00000257430.4:c.469_470del	p.Trp157ValfsTer10	p.W157Vfs*10	ENST00000257430	NM_000038.5	157	TGg/g																																																																															
APC	324	MSKCC	GRCh37	5	112173685	112173685	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	150	391	0	ENST00000257430.4:c.2395del	p.Tyr799MetfsTer21	p.Y799Mfs*21	ENST00000257430	NM_000038.5	798	gaT/ga																																																																															
MET	4233	MSKCC	GRCh37	7	116397827	116397827	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0024465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	151	577	0	ENST00000397752.3:c.2101A>G	p.Ser701Gly	p.S701G	ENST00000397752	NM_000245.2	701	Agt/Ggt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11199443	11199443	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746116382		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			305	67	303	0	ENST00000361445.4:c.5048G>A	p.Arg1683Gln	p.R1683Q	ENST00000361445	NM_004958.3	1683	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	77	306	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			342	24	292	0	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	64	267	1	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			302	51	245	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			428	225	391	5	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			358	87	308	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38641680	38641680	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376699107		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	66	264	0	ENST00000299084.4:c.640C>T	p.Arg214Trp	p.R214W	ENST00000299084	NM_152594.2	214	Cgg/Tgg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646981	23646981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs587776408		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	46	302	2	ENST00000261584.4:c.886del	p.Met296Ter	p.M296*	ENST00000261584	NM_024675.3	296	Atg/tg																																																																															
CDH1	999	MSKCC	GRCh37	16	68835613	68835613	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			478	117	348	0	ENST00000261769.5:c.208del	p.Ser70ProfsTer13	p.S70Pfs*13	ENST00000261769	NM_004360.3	68	taT/ta																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			501	44	426	3	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2207633	2207633	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752264656		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			251	65	325	0	ENST00000398665.3:c.917C>T	p.Thr306Met	p.T306M	ENST00000398665	NM_032482.2	306	aCg/aTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			453	47	419	2	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
CIC	23152	MSKCC	GRCh37	19	42791719	42791719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	88	397	0	ENST00000575354.2:c.605G>A	p.Arg202Gln	p.R202Q	ENST00000575354	NM_015125.3	202	cGg/cAg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912061	50912061	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149569984		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	96	316	0	ENST00000440232.2:c.1795G>A	p.Ala599Thr	p.A599T	ENST00000440232	NM_002691.3	599	Gcc/Acc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			340	38	360	0	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
IRS1	3667	MSKCC	GRCh37	2	227660544	227660544	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1801278		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	53	405	0	ENST00000305123.5:c.2911G>T	p.Gly971Trp	p.G971W	ENST00000305123	NM_005544.2	971	Ggg/Tgg																																																																															
ATR	545	MSKCC	GRCh37	3	142261554	142261555	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1043355995		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			361	85	268	0	ENST00000350721.4:c.3402dup	p.Asn1135Ter	p.N1135*	ENST00000350721	NM_001184.3	1134	-/T																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936096	178936096	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519940		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			245	18	164	0	ENST00000263967.3:c.1638G>T	p.Gln546His	p.Q546H	ENST00000263967	NM_006218.2	546	caG/caT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			411	92	288	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			317	216	369	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163356	47163356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			378	27	310	0	ENST00000409792.3:c.2770G>A	p.Ala924Thr	p.A924T	ENST00000409792	NM_014159.6	924	Gca/Aca																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			630	70	418	1	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			384	83	278	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199945	138199945	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			416	89	383	0	ENST00000237289.4:c.1368del	p.Pro457LeufsTer20	p.P457Lfs*20	ENST00000237289	NM_001270507.1	455	Ggg/gg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	93	393	4	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	68	293	0	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978462	2978462	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1331618139		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			279	61	250	1	ENST00000396946.4:c.868G>A	p.Gly290Arg	p.G290R	ENST00000396946	NM_032415.4	290	Ggg/Agg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141559308	141559308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			357	79	329	0	ENST00000220592.5:c.1493C>T	p.Ala498Val	p.A498V	ENST00000220592	NM_012154.3	498	gCg/gTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39911441	39911441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			185	77	153	1	ENST00000378444.4:c.5189C>T	p.Thr1730Met	p.T1730M	ENST00000378444	NM_001123385.1	1730	aCg/aTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097793	27097793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			427	30	322	0	ENST00000324856.7:c.3382C>T	p.Pro1128Ser	p.P1128S	ENST00000324856	NM_006015.4	1128	Ccc/Tcc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106064	8106064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			461	39	316	0	ENST00000346208.3:c.884G>A	p.Gly295Glu	p.G295E	ENST00000346208		295	gGa/gAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118352749	118352749	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			454	115	370	0	ENST00000534358.1:c.3954A>C	p.Glu1318Asp	p.E1318D	ENST00000534358	NM_005933.3	1318	gaA/gaC																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820852	3820852	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			445	55	344	0	ENST00000262367.5:c.2599C>A	p.Pro867Thr	p.P867T	ENST00000262367	NM_004380.2	867	Cca/Aca																																																																															
CTCF	10664	MSKCC	GRCh37	16	67663343	67663343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			476	52	292	0	ENST00000264010.4:c.1744G>T	p.Gly582Cys	p.G582C	ENST00000264010	NM_006565.3	582	Ggc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831167	72831167	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	86	339	0	ENST00000268489.5:c.5414C>A	p.Ala1805Asp	p.A1805D	ENST00000268489	NM_006885.3	1805	gCt/gAt																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870590	40870591	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			436	75	318	0	ENST00000428826.2:c.812dup	p.Gln272SerfsTer33	p.Q272Sfs*33	ENST00000428826		271	cct/ccCt																																																																															
CD79A	973	MSKCC	GRCh37	19	42385033	42385033	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			305	26	268	0	ENST00000221972.3:c.667C>A	p.Leu223Met	p.L223M	ENST00000221972	NM_021601.3	223	Ctg/Atg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113362	209113362	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758524291		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	92	314	0	ENST00000345146.2:c.145C>T	p.Arg49Cys	p.R49C	ENST00000345146	NM_005896.2	49	Cgt/Tgt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663001	227663001	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs764594875		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	23	337	0	ENST00000305123.5:c.454G>T	p.Gly152Cys	p.G152C	ENST00000305123	NM_005544.2	152	Ggt/Tgt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46255845	46255845	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs373572972		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			290	35	246	0	ENST00000371998.3:c.457G>C	p.Val153Leu	p.V153L	ENST00000371998		153	Gtt/Ctt																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62320478	62320478	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs753779060		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			273	49	285	0	ENST00000482936.1:c.1871G>A	p.Arg624Gln	p.R624Q	ENST00000482936		624	cGg/cAg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204581	128204581	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1004873472		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			356	50	340	0	ENST00000341105.2:c.860G>A	p.Arg287His	p.R287H	ENST00000341105	NM_032638.4	287	cGt/cAt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637683	52637685	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			335	52	245	0	ENST00000394830.3:c.2631_2633del	p.Asp877del	p.D877del	ENST00000394830	NM_018313.4	877	gaTGAa/gaa																																																																															
MITF	4286	MSKCC	GRCh37	3	69998321	69998321	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			392	37	281	0	ENST00000352241.4:c.880+2T>C		p.X294_splice	ENST00000352241	NM_198159.2	294																																																																																
TERT	7015	MSKCC	GRCh37	5	1296018	1296018	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			399	45	390	0				ENST00000310581	NM_198253.2																																																																																	
RXRA	6256	MSKCC	GRCh37	9	137323787	137323787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	22	311	0	ENST00000481739.1:c.1080G>A	p.Met360Ile	p.M360I	ENST00000481739	NM_002957.4	360	atG/atA																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402435	139402435	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769903954		P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			334	91	295	0	ENST00000277541.6:c.3482C>T	p.Thr1161Met	p.T1161M	ENST00000277541	NM_017617.3	1161	aCg/aTg																																																																															
CD274	29126	MSKCC	GRCh37	9	5462939	5462939	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075094-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			477	114	377	0	ENST00000381577.3:c.500G>A	p.Trp167Ter	p.W167*	ENST00000381577	NM_014143.3	167	tGg/tAg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251659	212251659	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139785964		P-0078819-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			670	79	531	0	ENST00000342788.4:c.3400G>A	p.Val1134Met	p.V1134M	ENST00000342788	NM_005235.2	1134	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0079023-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			279	476	304	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602487	10602487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079023-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			395	375	454	0	ENST00000171111.5:c.1091G>T	p.Gly364Val	p.G364V	ENST00000171111	NM_203500.1	364	gGc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0079023-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			183	372	235	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ATM	472	MSKCC	GRCh37	11	108224540	108224540	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079023-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	238	307	0	ENST00000278616.4:c.8719C>A	p.Pro2907Thr	p.P2907T	ENST00000278616	NM_000051.3	2907	Cct/Act																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916136	9916136	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079023-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			262	250	323	0	ENST00000330684.3:c.2153T>A	p.Val718Asp	p.V718D	ENST00000330684	NM_001134407.1	718	gTc/gAc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31508865	31508865	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0079023-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			379	332	317	0	ENST00000344624.3:c.1450G>T	p.Glu484Ter	p.E484*	ENST00000344624		484	Gag/Tag																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231474174	231474174	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079023-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			699	359	346	0	ENST00000295050.7:c.45G>T	p.Trp15Cys	p.W15C	ENST00000295050	NM_032018.5	15	tgG/tgT																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39609288	39609288	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0079023-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			202	85	251	0	ENST00000262039.4:c.1591-1G>T		p.X531_splice	ENST00000262039	NM_002647.2	531																																																																																
SPOP	8405	MSKCC	GRCh37	17	47684667	47684667	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079023-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			229	332	334	0	ENST00000347630.2:c.782G>T	p.Gly261Val	p.G261V	ENST00000347630	NM_001007230.1	261	gGg/gTg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78935264	78935264	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079023-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			297	428	375	0	ENST00000306801.3:c.3676C>G	p.His1226Asp	p.H1226D	ENST00000306801	NM_020761.2	1226	Cac/Gac																																																																															
ATM	472	MSKCC	GRCh37	11	108160357	108160357	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0079024-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	66	284	0	ENST00000278616.4:c.4265T>A	p.Ile1422Lys	p.I1422K	ENST00000278616	NM_000051.3	1422	aTa/aAa																																																																															
ATM	472	MSKCC	GRCh37	11	108164163	108164164	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079024-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			349	86	305	0	ENST00000278616.4:c.4741dup	p.Ile1581AsnfsTer5	p.I1581Nfs*5	ENST00000278616	NM_000051.3	1579	caa/cAaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0079024-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	95	282	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953550	32953550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11571769		P-0079024-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	65	403	0	ENST00000380152.3:c.8851G>A	p.Ala2951Thr	p.A2951T	ENST00000380152		2951	Gcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0079158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	96	390	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0079158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	212	451	1	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32936814	32936814	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	18	328	0	ENST00000380152.3:c.7960C>G	p.Leu2654Val	p.L2654V	ENST00000380152		2654	Ctt/Gtt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937657	32937657	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	27	333	0	ENST00000380152.3:c.8318C>G	p.Ser2773Cys	p.S2773C	ENST00000380152		2773	tCt/tGt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103510715	103510715	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			89	29	323	0	ENST00000355739.4:c.619G>C	p.Asp207His	p.D207H	ENST00000355739	NM_000123.3	207	Gat/Cat																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422539	47422539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	105	441	0	ENST00000404338.3:c.607G>A	p.Asp203Asn	p.D203N	ENST00000404338	NM_004491.4	203	Gac/Aac																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716212	52716212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	54	451	0	ENST00000322088.6:c.656C>T	p.Ser219Leu	p.S219L	ENST00000322088	NM_014225.5	219	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0079272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	87	534	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
BRAF	673	MSKCC	GRCh37	7	140477837	140477851	+	inframe_deletion	In_Frame_Del	DEL	TAGGTGCTGTCACAT	TAGGTGCTGTCACAT	-			P-0079272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	51	341	0	ENST00000288602.6:c.1457_1471del	p.Asn486_Pro490del	p.N486_P490del	ENST00000288602	NM_004333.4	486	aATGTGACAGCACCTAca/aca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775998497		P-0079272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	48	378	1	ENST00000373198.4:c.3281C>T	p.Pro1094Leu	p.P1094L	ENST00000373198	NM_133170.3	1094	cCg/cTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043464	180043464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	69	430	0	ENST00000261937.6:c.3122G>A	p.Arg1041Gln	p.R1041Q	ENST00000261937	NM_182925.4	1041	cGg/cAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971040	21971041	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0079272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	49	422	0	ENST00000304494.5:c.317_318insA	p.Arg107AlafsTer13	p.R107Afs*13	ENST00000304494	NM_000077.4	106	gtg/gtAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581250	48581251	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0079272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	57	391	0	ENST00000342988.3:c.554_555insGT	p.Pro186TyrfsTer17	p.P186Yfs*17	ENST00000342988	NM_005359.5	185	cca/ccGTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0079309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	90	485	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166449	32166449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	66	516	0	ENST00000375023.3:c.4594G>A	p.Glu1532Lys	p.E1532K	ENST00000375023	NM_004557.3	1532	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256144	16256144	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138355680		P-0079309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	100	568	0	ENST00000375759.3:c.3409C>T	p.Arg1137Cys	p.R1137C	ENST00000375759	NM_015001.2	1137	Cgt/Tgt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342446	118342446	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0079309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	87	496	0	ENST00000534358.1:c.572C>G	p.Ser191Ter	p.S191*	ENST00000534358	NM_005933.3	191	tCa/tGa																																																																															
SMO	6608	MSKCC	GRCh37	7	128846099	128846099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	88	544	0	ENST00000249373.3:c.1029C>G	p.Phe343Leu	p.F343L	ENST00000249373	NM_005631.4	343	ttC/ttG																																																																															
ATR	545	MSKCC	GRCh37	3	142222229	142222229	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	74	384	0	ENST00000350721.4:c.5263C>T	p.Gln1755Ter	p.Q1755*	ENST00000350721	NM_001184.3	1755	Cag/Tag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63810655	63810655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	69	402	0	ENST00000279873.7:c.742C>T	p.Leu248Phe	p.L248F	ENST00000279873	NM_032199.2	248	Ctt/Ttt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1941396	1941396	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	70	393	0	ENST00000382895.3:c.1772C>G	p.Ser591Cys	p.S591C	ENST00000382895	NM_133330.2	591	tCt/tGt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259934	16259934	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	97	593	0	ENST00000375759.3:c.7199C>G	p.Ser2400Cys	p.S2400C	ENST00000375759	NM_015001.2	2400	tCt/tGt																																																																															
ALK	238	MSKCC	GRCh37	2	29455312	29455312	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0079310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	236	423	0	ENST00000389048.3:c.2490G>A	p.Met830Ile	p.M830I	ENST00000389048	NM_004304.4	830	atG/atA																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040801	47040801	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0079310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	311	523	0	ENST00000329236.7:c.1201+1G>T		p.X401_splice	ENST00000329236	NM_001204466.1	401																																																																																
CDKN1B	1027	MSKCC	GRCh37	12	12870971	12870972	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0079310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	315	443	0	ENST00000228872.4:c.201_202dup	p.Lys68ThrfsTer4	p.K68Tfs*4	ENST00000228872	NM_004064.3	66	-/CA																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681109	30681109	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	226	401	0	ENST00000376406.3:c.610G>T	p.Val204Phe	p.V204F	ENST00000376406	NM_014641.2	204	Gtc/Ttc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100723	8100723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	311	434	0	ENST00000346208.3:c.697C>T	p.Leu233Phe	p.L233F	ENST00000346208		233	Ctc/Ttc																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732445	74732445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	357	502	0	ENST00000359995.5:c.464C>T	p.Ser155Phe	p.S155F	ENST00000359995	NM_001195427.1	155	tCt/tTt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515021	103515021	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200503959		P-0079450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	315	522	0	ENST00000355739.4:c.1522G>T	p.Val508Phe	p.V508F	ENST00000355739	NM_000123.3	508	Gtt/Ttt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751508	57751508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	209	515	0	ENST00000274289.3:c.1483G>A	p.Glu495Lys	p.E495K	ENST00000274289	NM_006622.3	495	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7590693	7590693	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0079450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			60	208	507	2	ENST00000269305.4:c.-29+2T>G		p.X10_splice	ENST00000269305	NM_001126112.2	10																																																																																
POLE	5426	MSKCC	GRCh37	12	133220089	133220089	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	282	538	0	ENST00000320574.5:c.4348del	p.Gln1450SerfsTer3	p.Q1450Sfs*3	ENST00000320574	NM_006231.2	1450	Cag/ag																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770090	56770090	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876659683		P-0079453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	138	315	0	ENST00000337432.4:c.86C>T	p.Ser29Phe	p.S29F	ENST00000337432	NM_058216.2	29	tCt/tTt																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78444681	78444681	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	56	357	0	ENST00000370768.2:c.8A>G	p.Asp3Gly	p.D3G	ENST00000370768	NM_003902.3	3	gAc/gGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115636	8115703	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAGCCTGTGCATTTCAGAGGCAGCAAAAAAGTAAAAAAAAAAAAAAAAAATTGATCTTTGTTTAGAT	AGAGCCTGTGCATTTCAGAGGCAGCAAAAAAGTAAAAAAAAAAAAAAAAAATTGATCTTTGTTTAGAT	-			P-0079453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			83	16	137	0	ENST00000346208.3:c.1048-66_1049del		p.X350_splice	ENST00000346208		350																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27022999	27022999	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1436957504		P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	70	240	0	ENST00000324856.7:c.110del	p.Gly37AlafsTer14	p.G37Afs*14	ENST00000324856	NM_006015.4	35	gcG/gc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056262	27056262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	159	397	0	ENST00000324856.7:c.1258C>T	p.Gln420Ter	p.Q420*	ENST00000324856	NM_006015.4	420	Cag/Tag																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439625	51439625	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142420524		P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	154	312	0	ENST00000262662.1:c.190G>A	p.Asp64Asn	p.D64N	ENST00000262662		64	Gat/Aat																																																																															
TET1	80312	MSKCC	GRCh37	10	70446284	70446284	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	142	321	1	ENST00000373644.4:c.5230del	p.Arg1744GlufsTer18	p.R1744Efs*18	ENST00000373644	NM_030625.2	1742	Aaa/aa																																																																															
CCND1	595	MSKCC	GRCh37	11	69466017	69466017	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	133	373	0	ENST00000227507.2:c.855C>A	p.Cys285Ter	p.C285*	ENST00000227507	NM_053056.2	285	tgC/tgA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	58	336	0	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436297	110436302	+	inframe_deletion	In_Frame_Del	DEL	CGGCGG	CGGCGG	-	rs772502170		P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	78	380	2	ENST00000375856.3:c.2099_2104del	p.Ala700_Ala701del	p.A700_A701del	ENST00000375856	NM_003749.2	700	gCCGCCGtg/gtg																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281070	49281070	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	119	322	0	ENST00000282018.3:c.117A>T	p.Glu39Asp	p.E39D	ENST00000282018	NM_020377.2	39	gaA/gaT																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729115	66729115	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs727504819		P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	143	351	0	ENST00000307102.5:c.323G>A	p.Arg108Gln	p.R108Q	ENST00000307102	NM_002755.3	108	cGg/cAg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2218147	2218147	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762923537		P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	131	392	0	ENST00000326181.6:c.209C>T	p.Pro70Leu	p.P70L	ENST00000326181	NM_032271.2	70	cCg/cTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779343	3779343	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1369215188		P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	174	447	0	ENST00000262367.5:c.5705C>T	p.Thr1902Met	p.T1902M	ENST00000262367	NM_004380.2	1902	aCg/aTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	132	254	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821360	72821360	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	108	257	0	ENST00000268489.5:c.10815del	p.Ser3606ProfsTer88	p.S3606Pfs*88	ENST00000268489	NM_006885.3	3605	ccC/cc																																																																															
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	128	291	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475061	40475063	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	140	328	0	ENST00000264657.5:c.1847_1849del	p.Glu616del	p.E616del	ENST00000264657	NM_139276.2	616	gAAGga/gga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	305	378	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	62	363	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780068		P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	171	363	0	ENST00000269305.4:c.472C>T	p.Arg158Cys	p.R158C	ENST00000269305	NM_001126112.2	158	Cgc/Tgc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7982767	7982767	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	50	303	0	ENST00000319144.4:c.1018del	p.Leu340SerfsTer12	p.L340Sfs*12	ENST00000319144	NM_001139.2	340	Ctc/tc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	138	306	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604745	48604745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	158	346	0	ENST00000342988.3:c.1567T>C	p.Cys523Arg	p.C523R	ENST00000342988	NM_005359.5	523	Tgc/Cgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296358	15296358	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	138	480	2	ENST00000263388.2:c.2084del	p.Pro695ArgfsTer165	p.P695Rfs*165	ENST00000263388	NM_000435.2	695	cCg/cg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967091	18967092	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs1384543747		P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	58	277	0	ENST00000262803.5:c.1814_1815del	p.Glu605AlafsTer17	p.E605Afs*17	ENST00000262803	NM_002911.3	602	gcAGag/gcag																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257366	19257366	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	116	371	0	ENST00000162023.5:c.767del	p.Pro256GlnfsTer?	p.P256Qfs*?	ENST00000162023		256	cCa/ca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210893	36210893	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	124	395	1	ENST00000222270.7:c.649del	p.Arg217GlyfsTer22	p.R217Gfs*22	ENST00000222270	NM_014727.1	215	aCc/ac																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47425048	47425048	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758716231		P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	74	350	1	ENST00000404338.3:c.3116C>T	p.Pro1039Leu	p.P1039L	ENST00000404338	NM_004491.4	1039	cCg/cTg																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	131	287	0	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57478781	57478781	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769546153		P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	52	391	0	ENST00000371085.3:c.367G>A	p.Glu123Lys	p.E123K	ENST00000371085	NM_000516.4	123	Gag/Aag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	229	299	15	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070349	37070349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1220422495		P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	155	341	0	ENST00000231790.2:c.1489del	p.Arg497GlyfsTer11	p.R497Gfs*11	ENST00000231790	NM_000249.3	495	aCc/ac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	104	261	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31504701	31504701	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	130	306	0	ENST00000344624.3:c.1629A>T	p.Arg543Ser	p.R543S	ENST00000344624		543	agA/agT																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	100	269	0	ENST00000412585.2:c.626C>A	p.Pro209Gln	p.P209Q	ENST00000412585	NM_005514.6	209	cCa/cAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	133	269	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55233127	55233127	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	115	288	0	ENST00000275493.2:c.1877A>G	p.Tyr626Cys	p.Y626C	ENST00000275493	NM_005228.3	626	tAc/tGc																																																																															
BTK	695	MSKCC	GRCh37	X	100617205	100617205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	149	326	0	ENST00000308731.7:c.544C>T	p.Arg182Trp	p.R182W	ENST00000308731	NM_000061.2	182	Cgg/Tgg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123171446	123171446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	186	273	0	ENST00000218089.9:c.363del	p.Phe121LeufsTer24	p.F121Lfs*24	ENST00000218089	NM_001042749.1	120	Ttt/tt																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	153	433	1	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
AR	367	MSKCC	GRCh37	X	66765997	66765997	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1363782162		P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	249	355	0	ENST00000374690.3:c.1009G>A	p.Gly337Arg	p.G337R	ENST00000374690	NM_000044.3	337	Ggg/Agg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852302	63852302	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	128	429	0	ENST00000279873.7:c.3080A>G	p.Lys1027Arg	p.K1027R	ENST00000279873	NM_032199.2	1027	aAg/aGg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435208	18435208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	31	302	0	ENST00000266497.5:c.193G>A	p.Val65Met	p.V65M	ENST00000266497		65	Gtg/Atg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988391	36988391	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1332287438		P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	68	305	0	ENST00000354822.5:c.262G>A	p.Val88Met	p.V88M	ENST00000354822	NM_001079668.2	88	Gtg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992640	72992640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	116	302	0	ENST00000268489.5:c.1405G>A	p.Glu469Lys	p.E469K	ENST00000268489	NM_006885.3	469	Gag/Aag																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489787	40489787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	156	325	0	ENST00000264657.5:c.639G>A	p.Met213Ile	p.M213I	ENST00000264657	NM_139276.2	213	atG/atA																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445695	29445696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	67	298	0	ENST00000544604.2:c.1530dup	p.Thr511HisfsTer56	p.T511Hfs*56	ENST00000544604	NM_001206998.1	509	ttc/ttCc																																																																															
NF2	4771	MSKCC	GRCh37	22	30067917	30067917	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	186	286	0	ENST00000338641.4:c.1102A>G	p.Thr368Ala	p.T368A	ENST00000338641	NM_000268.3	368	Aca/Gca																																																																															
MLH1	4292	MSKCC	GRCh37	3	37090451	37090451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	115	291	0	ENST00000231790.2:c.2046G>A	p.Met682Ile	p.M682I	ENST00000231790	NM_000249.3	682	atG/atA																																																																															
TET2	54790	MSKCC	GRCh37	4	106157185	106157185	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	149	372	0	ENST00000380013.4:c.2086T>C	p.Ser696Pro	p.S696P	ENST00000380013	NM_001127208.2	696	Tcc/Ccc																																																																															
KIT	3815	MSKCC	GRCh37	4	55593413	55593413	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	114	281	0	ENST00000288135.5:c.1570C>A	p.Pro524Thr	p.P524T	ENST00000288135	NM_000222.2	524	Cct/Act																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66233111	66233111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	153	248	1	ENST00000273854.3:c.1888C>A	p.Pro630Thr	p.P630T	ENST00000273854	NM_004439.5	630	Cca/Aca																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129294	152129294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	93	268	0	ENST00000206249.3:c.247G>A	p.Gly83Arg	p.G83R	ENST00000206249	NM_000125.3	83	Ggg/Agg																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197367	26197367	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	152	455	0	ENST00000356476.2:c.112A>G	p.Lys38Glu	p.K38E	ENST00000356476		38	Aag/Gag																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910542	29910542	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs281864723		P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			39	54	51	0	ENST00000376809.5:c.82T>C	p.Ser28Pro	p.S28P	ENST00000376809	NM_002116.7	28	Tcc/Ccc																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31238850	31238850	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	25	360	0	ENST00000376228.5:c.619G>C	p.Glu207Gln	p.E207Q	ENST00000376228	NM_002117.5	207	Gaa/Caa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324476	31324476	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs151341206		P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	45	214	0	ENST00000412585.2:c.332A>G	p.Gln111Arg	p.Q111R	ENST00000412585	NM_005514.6	111	cAg/cGg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372351	55372351	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	145	370	0	ENST00000297316.4:c.1044del	p.Ser349ValfsTer38	p.S349Vfs*38	ENST00000297316	NM_022454.3	347	gaC/ga																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0079460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	113	385	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs869025608		P-0079460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	77	315	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0079460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	145	357	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411276	63411276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	126	242	0	ENST00000330258.3:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000330258	NM_152424.3	631	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245381	153245381	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	69	280	0	ENST00000281708.4:c.1810A>G	p.Lys604Glu	p.K604E	ENST00000281708	NM_033632.3	604	Aaa/Gaa																																																																															
PARK2	5071	MSKCC	GRCh37	6	161771163	161771163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755627153		P-0079460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	104	251	0	ENST00000366898.1:c.1366G>A	p.Val456Ile	p.V456I	ENST00000366898	NM_004562.2	456	Gtc/Atc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675547	30675547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	32	385	0	ENST00000376406.3:c.2809G>A	p.Val937Met	p.V937M	ENST00000376406	NM_014641.2	937	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0079466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	54	225	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876188	35876188	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs536561203		P-0079466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	31	369	0	ENST00000303115.3:c.980C>T	p.Thr327Met	p.T327M	ENST00000303115	NM_002185.3	327	aCg/aTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107176	27107176	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	67	424	0	ENST00000324856.7:c.6787G>T	p.Val2263Leu	p.V2263L	ENST00000324856	NM_006015.4	2263	Gta/Tta																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49422638	49422638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	63	340	0	ENST00000301067.7:c.14355G>T	p.Met4785Ile	p.M4785I	ENST00000301067	NM_003482.3	4785	atG/atT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790111	40790111	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1343257768		P-0079466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	56	419	0	ENST00000373198.4:c.2620C>G	p.Pro874Ala	p.P874A	ENST00000373198	NM_133170.3	874	Cct/Gct																																																																															
PPARG	5468	MSKCC	GRCh37	3	12422885	12422885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	24	306	0	ENST00000287820.6:c.375G>T	p.Lys125Asn	p.K125N	ENST00000287820	NM_015869.4	125	aaG/aaT																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185198133	185198133	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	50	338	0	ENST00000265026.3:c.2615A>T	p.Glu872Val	p.E872V	ENST00000265026	NM_004721.4	872	gAg/gTg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748122	41748122	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	36	280	0	ENST00000226382.2:c.647del	p.Gly216AlafsTer93	p.G216Afs*93	ENST00000226382	NM_003924.3	216	gGc/gc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163812	152163812	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	28	313	0	ENST00000206249.3:c.533C>A	p.Ser178Tyr	p.S178Y	ENST00000206249	NM_000125.3	178	tCt/tAt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411691	63411691	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	49	411	0	ENST00000330258.3:c.1476G>T	p.Arg492Ser	p.R492S	ENST00000330258	NM_152424.3	492	agG/agT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0079472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	33	270	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
CDH1	999	MSKCC	GRCh37	16	68842326	68842326	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0079472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	57	331	0	ENST00000261769.5:c.388-1G>A		p.X130_splice	ENST00000261769	NM_004360.3	130																																																																																
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0079472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	49	391	0	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27089777	27089777	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0079472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	19	337	0	ENST00000324856.7:c.2732+1G>A		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																																
CBFB	865	MSKCC	GRCh37	16	67063666	67063666	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0079472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	36	342	0	ENST00000412916.2:c.115G>T	p.Glu39Ter	p.E39*	ENST00000412916		39	Gaa/Taa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0079473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	125	312	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0079473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	179	323	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929041	32929041	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80358930		P-0079473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	34	310	0	ENST00000380152.3:c.7051G>A	p.Ala2351Thr	p.A2351T	ENST00000380152		2351	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0079473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	130	327	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	65	323	0	ENST00000342988.3:c.1055G>C	p.Gly352Ala	p.G352A	ENST00000342988	NM_005359.5	352	gGa/gCa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274314	5274314	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761620469		P-0079473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	47	340	0	ENST00000357368.4:c.133G>A	p.Val45Met	p.V45M	ENST00000357368	NM_002850.3	45	Gtg/Atg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903690	114903690	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1369436357		P-0079473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	77	209	0	ENST00000543371.1:c.694C>T	p.Arg232Trp	p.R232W	ENST00000543371	NM_001198531.1	232	Cgg/Tgg																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872936	136872936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	63	350	0	ENST00000241393.3:c.562C>T	p.Arg188Cys	p.R188C	ENST00000241393	NM_003467.2	188	Cgc/Tgc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160707	56160707	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	177	306	0	ENST00000399503.3:c.981C>G	p.Phe327Leu	p.F327L	ENST00000399503	NM_005921.1	327	ttC/ttG																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816802	32816802	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	65	268	0	ENST00000354258.4:c.1522G>C	p.Val508Leu	p.V508L	ENST00000354258	NM_000593.5	508	Gtt/Ctt																																																																															
XIAP	331	MSKCC	GRCh37	X	123034432	123034432	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	87	203	0	ENST00000355640.3:c.1189A>T	p.Ile397Phe	p.I397F	ENST00000355640		397	Att/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	225	407	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69002946	69002946	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146486437		P-0079474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	44	264	0	ENST00000288368.4:c.2246C>T	p.Thr749Met	p.T749M	ENST00000288368	NM_024870.2	749	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993516	72993516	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772845316		P-0079474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	68	408	0	ENST00000268489.5:c.529G>A	p.Ala177Thr	p.A177T	ENST00000268489	NM_006885.3	177	Gcg/Acg																																																																															
GAB2	9846	MSKCC	GRCh37	11	78128731	78128731	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	64	419	0	ENST00000361507.4:c.36G>A	p.Trp12Ter	p.W12*	ENST00000361507	NM_080491.2	12	tgG/tgA																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0079475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	111	371	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576096	88576096	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371590703		P-0079477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	73	316	0	ENST00000360948.2:c.1577C>T	p.Pro526Leu	p.P526L	ENST00000360948	NM_001012338.2	526	cCg/cTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448305	56448318	+	frameshift_variant	Frame_Shift_Del	DEL	CCGTCGAGGACTCT	CCGTCGAGGACTCT	-			P-0079477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	169	404	0	ENST00000407977.2:c.329_342del	p.Glu110GlyfsTer10	p.E110Gfs*10	ENST00000407977		110	gAGAGTCCTCGACGG/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0079477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	164	305	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222730	5222730	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374875451		P-0079477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	64	269	0	ENST00000357368.4:c.3073G>A	p.Val1025Ile	p.V1025I	ENST00000357368	NM_002850.3	1025	Gtc/Atc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518076	176518076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	181	341	0	ENST00000292408.4:c.574C>T	p.His192Tyr	p.H192Y	ENST00000292408	NM_213647.1	192	Cat/Tat																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0079477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	189	254	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782144		P-0079482-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	162	300	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc																																																																															
ATM	472	MSKCC	GRCh37	11	108218085	108218085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs769052707		P-0079482-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	26	195	0	ENST00000278616.4:c.8664A>G	p.Ile2888Met	p.I2888M	ENST00000278616	NM_000051.3	2888	atA/atG																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600376	10600376	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079482-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	206	244	0	ENST00000171111.5:c.1479G>C	p.Glu493Asp	p.E493D	ENST00000171111	NM_203500.1	493	gaG/gaC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539050	187539050	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079482-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	62	288	0	ENST00000441802.2:c.8690A>G	p.Gln2897Arg	p.Q2897R	ENST00000441802	NM_005245.3	2897	cAg/cGg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966308	25966308	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0079482-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	32	274	0	ENST00000435504.4:c.2898A>C	p.Gln966His	p.Q966H	ENST00000435504		966	caA/caC																																																																															
PREX2	80243	MSKCC	GRCh37	8	69005890	69005890	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079482-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	24	250	0	ENST00000288368.4:c.2301C>A	p.Asp767Glu	p.D767E	ENST00000288368	NM_024870.2	767	gaC/gaA																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80430607	80430607	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079482-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			17	17	58	0	ENST00000286548.4:c.401G>T	p.Ser134Ile	p.S134I	ENST00000286548	NM_002072.3	134	aGt/aTt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448627	89448627	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079482-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	100	227	0	ENST00000336596.2:c.1591G>T	p.Asp531Tyr	p.D531Y	ENST00000336596	NM_005233.5	531	Gac/Tac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954046	32954046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079482-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	32	244	0	ENST00000380152.3:c.9113T>C	p.Leu3038Pro	p.L3038P	ENST00000380152		3038	cTa/cCa																																																																															
PGR	5241	MSKCC	GRCh37	11	100998279	100998279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079482-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	36	197	0	ENST00000325455.5:c.1523C>A	p.Ala508Asp	p.A508D	ENST00000325455	NM_001202474.3	508	gCc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577526	7577526	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121912653		P-0079487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	74	295	0	ENST00000269305.4:c.755T>C	p.Leu252Pro	p.L252P	ENST00000269305	NM_001126112.2	252	cTc/cCc																																																																															
APC	324	MSKCC	GRCh37	5	112174998	112174999	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	86	328	0	ENST00000257430.4:c.3708dup	p.Gln1237ThrfsTer3	p.Q1237Tfs*3	ENST00000257430	NM_000038.5	1236	gca/gcAa																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27777943	27777943	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762987714		P-0079487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			868	80	464	0	ENST00000369163.2:c.92C>T	p.Pro31Leu	p.P31L	ENST00000369163	NM_003536.2	31	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs786201057		P-0079495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			107	135	406	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																															
MYC	4609	MSKCC	GRCh37	8	128750587	128750589	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-	rs776242757		P-0079495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1065	62	399	0	ENST00000377970.2:c.130_132del	p.Glu44del	p.E44del	ENST00000377970	NM_002467.4	42	GAG/-																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010494	48010494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	127	351	0	ENST00000234420.5:c.122C>G	p.Ser41Cys	p.S41C	ENST00000234420	NM_000179.2	41	tCt/tGt																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936809	150936809	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	143	403	0	ENST00000271640.5:c.3845G>C	p.Gly1282Ala	p.G1282A	ENST00000271640	NM_001145415.1	1282	gGg/gCg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630779	187630779	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	79	411	0	ENST00000441802.2:c.203G>T	p.Trp68Leu	p.W68L	ENST00000441802	NM_005245.3	68	tGg/tTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624258	89624259	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0079495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	24	149	0	ENST00000371953.3:c.33_34insTA	p.Asn12Ter	p.N12*	ENST00000371953	NM_000314.4	11	aga/agATa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3823791	3823792	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0079495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	243	436	0	ENST00000262367.5:c.2423_2424del	p.Val808GlyfsTer23	p.V808Gfs*23	ENST00000262367	NM_004380.2	808	gTG/g																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913942	32913942	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			72	23	349	0	ENST00000380152.3:c.5450del	p.Ser1817PhefsTer23	p.S1817Ffs*23	ENST00000380152		1817	tCt/tt																																																																															
B2M	567	MSKCC	GRCh37	15	45003506	45003754	+	coding_sequence_variant,5_prime_UTR_variant	In_Frame_Del	DEL	CCGATGTACAGACAGCAAACTCACCCAGTCTAGTGCATGCCTTCTTAAACATCACGAGACTCTAAGAAAAGGAAACTGAAAACGGGAAAGTCCCTCTCTCTAACCTGGCACTGCGTCGCTGGCTTGGAGACAGGTGACGGTCCCTGCGGGCCTTGTCCTGATTGGCTGGGCACGCGTTTAATATAAGTGGAGGCGTCGCGCTGGCGGGCATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCT	CCGATGTACAGACAGCAAACTCACCCAGTCTAGTGCATGCCTTCTTAAACATCACGAGACTCTAAGAAAAGGAAACTGAAAACGGGAAAGTCCCTCTCTCTAACCTGGCACTGCGTCGCTGGCTTGGAGACAGGTGACGGTCCCTGCGGGCCTTGTCCTGATTGGCTGGGCACGCGTTTAATATAAGTGGAGGCGTCGCGCTGGCGGGCATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCT	-			P-0079495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			12	75	34	0				ENST00000558401	NM_004048.2																																																																																	
SMARCA2	6595	MSKCC	GRCh37	9	2056757	2056758	+	missense_variant	Missense_Mutation	DNP	GC	GC	CG			P-0079495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	151	418	0	ENST00000349721.2:c.1259_1260delinsCG	p.Arg420Pro	p.R420P	ENST00000349721	NM_003070.3	420	cGC/cCG																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374222	138374243	+	coding_sequence_variant,3_prime_UTR_variant	In_Frame_Del	DEL	GGCTGATCGTTAAGATCTGTAG	GGCTGATCGTTAAGATCTGTAG	CAGT			P-0079495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	45	360	1				ENST00000289153	NM_006219.2	1067		22/22																																																																														
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0079498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	109	497	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153250882	153250882	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1390822119		P-0079498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	11	345	0	ENST00000281708.4:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000281708	NM_033632.3	393	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0079498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	78	292	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435994	56436022	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCTCCTGGGATGGCAGGAAGGGACCAG	TGGCTCCTGGGATGGCAGGAAGGGACCAG	-			P-0079498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	104	601	0	ENST00000407977.2:c.1115_1143del	p.Pro372ArgfsTer61	p.P372Rfs*61	ENST00000407977		372	cCTGGTCCCTTCCTGCCATCCCAGGAGCCA/c																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713812	30713829	+	inframe_deletion	In_Frame_Del	DEL	CCTCAAGAGCTCCAATAT	CCTCAAGAGCTCCAATAT	-			P-0079498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	124	578	0	ENST00000359013.4:c.1216_1233del	p.Lys406_Leu411del	p.K406_L411del	ENST00000359013	NM_001024847.2	404	gaCCTCAAGAGCTCCAATATc/gac																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31495410	31495410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	54	393	0	ENST00000344624.3:c.1738C>T	p.Pro580Ser	p.P580S	ENST00000344624		580	Ccg/Tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0079499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	43	550	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0079499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	85	401	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
MST1	4485	MSKCC	GRCh37	3	49723618	49723618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	13	186	0	ENST00000449682.2:c.1024C>T	p.Arg342Trp	p.R342W	ENST00000449682	NM_020998.3	342	Cgg/Tgg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001901	29001901	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	72	342	0	ENST00000282397.4:c.1264C>G	p.Leu422Val	p.L422V	ENST00000282397	NM_002019.4	422	Cta/Gta																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59926588	59926588	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0079499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	37	336	0	ENST00000259008.2:c.409A>T	p.Lys137Ter	p.K137*	ENST00000259008	NM_032043.2	137	Aag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0079524-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	147	333	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252865	36252865	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060499616		P-0079524-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	104	266	0	ENST00000300305.3:c.497G>A	p.Arg166Gln	p.R166Q	ENST00000300305		166	cGa/cAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178085	56178085	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079524-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	109	327	0	ENST00000399503.3:c.3058C>T	p.Gln1020Ter	p.Q1020*	ENST00000399503	NM_005921.1	1020	Caa/Taa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183323	56183371	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACAATTGCATTTATGGCACCTGAGGTGAGAAGCATCTTTGAGTGTGAT	GACAATTGCATTTATGGCACCTGAGGTGAGAAGCATCTTTGAGTGTGAT	-			P-0079524-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	78	260	0	ENST00000399503.3:c.4237_4257+28del		p.X1413_splice	ENST00000399503	NM_005921.1	1413																																																																																
CDH1	999	MSKCC	GRCh37	16	68845673	68845673	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079524-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	109	340	0	ENST00000261769.5:c.919C>T	p.Gln307Ter	p.Q307*	ENST00000261769	NM_004360.3	307	Caa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0079527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	57	213	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ALK	238	MSKCC	GRCh37	2	29917793	29917793	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149145987		P-0079527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	133	353	1	ENST00000389048.3:c.875G>A	p.Arg292His	p.R292H	ENST00000389048	NM_004304.4	292	cGc/cAc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891137	101891137	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0079527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	104	334	0	ENST00000374994.4:c.98C>T	p.Ala33Val	p.A33V	ENST00000374994	NM_004612.2	33	gCg/gTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81925131	81925131	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1382212475		P-0079527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	180	352	0	ENST00000359376.3:c.922G>A	p.Ala308Thr	p.A308T	ENST00000359376	NM_002661.3	308	Gcg/Acg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0079527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	113	279	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900160	101900171	+	inframe_deletion	In_Frame_Del	DEL	GAGAACAATTGC	GAGAACAATTGC	-			P-0079527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	99	342	0	ENST00000374994.4:c.600_611del	p.Ala202_Ile205del	p.A202_I205del	ENST00000374994	NM_004612.2	198	caGAGAACAATTGCg/cag																																																																															
MST1R	4486	MSKCC	GRCh37	3	49927421	49927421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	68	481	0	ENST00000296474.3:c.3883G>A	p.Asp1295Asn	p.D1295N	ENST00000296474	NM_002447.2	1295	Gac/Aac																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266057	41266298	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAA	AAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAA	-			P-0079527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	269	383	0	ENST00000349496.5:c.54_241+54del		p.X18_splice	ENST00000349496	NM_001904.3	18																																																																																
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0079528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	227	530	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112137081	112137081	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0079528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	113	227	0	ENST00000257430.4:c.834+1G>C		p.X278_splice	ENST00000257430	NM_000038.5	278																																																																																
RASA1	5921	MSKCC	GRCh37	5	86672759	86672759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	104	419	1	ENST00000274376.6:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000274376	NM_002890.2	749	cGa/cAa																																																																															
AR	367	MSKCC	GRCh37	X	66905936	66905936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759988495		P-0079528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	35	171	1	ENST00000374690.3:c.1853G>A	p.Arg618Gln	p.R618Q	ENST00000374690	NM_000044.3	618	cGg/cAg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326204	62326204	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs780364760		P-0079528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	169	386	0	ENST00000482936.1:c.3220G>A	p.Ala1074Thr	p.A1074T	ENST00000482936		1074	Gcg/Acg																																																																															
APC	324	MSKCC	GRCh37	5	112175061	112175061	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	94	352	0	ENST00000257430.4:c.3772del	p.Thr1258GlnfsTer7	p.T1258Qfs*7	ENST00000257430	NM_000038.5	1257	gAa/ga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467560	66467560	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	64	416	0	ENST00000273854.3:c.709G>C	p.Val237Leu	p.V237L	ENST00000273854	NM_004439.5	237	Gta/Cta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057520000		P-0079529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	298	518	0	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852217		P-0079529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	203	243	1	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900873	3900873	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	100	411	0	ENST00000262367.5:c.223C>T	p.Arg75Ter	p.R75*	ENST00000262367	NM_004380.2	75	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112170762	112170765	+	frameshift_variant	Frame_Shift_Del	DEL	CTTA	CTTA	-			P-0079529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	99	412	0	ENST00000257430.4:c.1863_1866del	p.Tyr622GlyfsTer7	p.Y622Gfs*7	ENST00000257430	NM_000038.5	620	CTTAct/ct																																																																															
APC	324	MSKCC	GRCh37	5	112175775	112175775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	209	408	0	ENST00000257430.4:c.4484G>A	p.Ser1495Asn	p.S1495N	ENST00000257430	NM_000038.5	1495	aGt/aAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0079529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	70	380	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
APC	324	MSKCC	GRCh37	5	112175766	112175767	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CACAGAAA			P-0079529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	166	403	0	ENST00000257430.4:c.4478_4479insAGAAACAC	p.Ser1495ThrfsTer15	p.S1495Tfs*15	ENST00000257430	NM_000038.5	1492	gcc/gcCACAGAAAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711018	114711019	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0079529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	87	207	0	ENST00000543371.1:c.243_244del	p.Ser82PhefsTer14	p.S82Ffs*14	ENST00000543371	NM_001198531.1	81	gAA/g																																																																															
RB1	5925	MSKCC	GRCh37	13	48955538	48955538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913303		P-0079531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	308	253	0	ENST00000267163.4:c.1654C>T	p.Arg552Ter	p.R552*	ENST00000267163	NM_000321.2	552	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782144		P-0079531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	313	416	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602764	10602764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	284	414	3	ENST00000171111.5:c.814C>T	p.Arg272Cys	p.R272C	ENST00000171111	NM_203500.1	272	Cgc/Tgc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321325	1321325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	336	376	0	ENST00000381566.1:c.430G>T	p.Gly144Trp	p.G144W	ENST00000381566		144	Ggg/Tgg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923480	9923480	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0079531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	78	289	0	ENST00000330684.3:c.1807A>C	p.Lys603Gln	p.K603Q	ENST00000330684	NM_001134407.1	603	Aaa/Caa																																																																															
MSH3	4437	MSKCC	GRCh37	5	80063935	80063935	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			69	130	289	0	ENST00000265081.6:c.2080G>T	p.Ala694Ser	p.A694S	ENST00000265081	NM_002439.4	694	Gcc/Tcc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7983245	7983245	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1233776328		P-0079531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	175	259	0	ENST00000319144.4:c.769C>A	p.His257Asn	p.H257N	ENST00000319144	NM_001139.2	257	Cac/Aac																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965675	93965675	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	149	328	0	ENST00000369303.4:c.2253T>A	p.Asp751Glu	p.D751E	ENST00000369303	NM_004440.3	751	gaT/gaA																																																																															
FLT1	2321	MSKCC	GRCh37	13	28908234	28908234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	385	293	0	ENST00000282397.4:c.2521G>T	p.Val841Leu	p.V841L	ENST00000282397	NM_002019.4	841	Gtg/Ttg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18966852	18966855	+	missense_variant	Missense_Mutation	ONP	CCGG	CCGG	TCGA			P-0079531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	268	378	0	ENST00000262803.5:c.1663_1666delinsTCGA	p.Pro555_Val556delinsSerMet	p.P555_V556delinsSM	ENST00000262803	NM_002911.3	555	CCGGtg/TCGAtg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	30	315	0	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231783	36231783	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1057519748		P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	12	587	0	ENST00000300305.3:c.601C>T	p.Arg201Ter	p.R201*	ENST00000300305		201	Cga/Tga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	57	548	3	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	52	602	2	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	123	464	3	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	69	659	6	ENST00000268489.5:c.5677_5678del	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	124	521	3	ENST00000342505.4:c.2580dup	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830902	72830903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	123	665	0	ENST00000268489.5:c.5677_5678dup	p.Asp1894GlyfsTer21	p.D1894Gfs*21	ENST00000268489	NM_006885.3	1893	agg/agAGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs786201057		P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	34	465	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528707	8528707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs545049137		P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	114	470	0	ENST00000356435.5:c.425C>T	p.Thr142Met	p.T142M	ENST00000356435		142	aCg/aTg																																																																															
FANCC	2176	MSKCC	GRCh37	9	98003011	98003011	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	25	309	0	ENST00000289081.3:c.265del	p.Ile89PhefsTer2	p.I89Ffs*2	ENST00000289081	NM_000136.2	89	Att/tt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65301111	65301111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370434553		P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	110	389	0	ENST00000342505.4:c.3337C>T	p.Arg1113Cys	p.R1113C	ENST00000342505	NM_002227.2	1113	Cgc/Tgc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350069	89350069	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758856347		P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	141	667	1	ENST00000301030.4:c.2881C>T	p.Arg961Cys	p.R961C	ENST00000301030	NM_001256183.1	961	Cgc/Tgc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42848513	42848513	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762108701		P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	27	397	0	ENST00000398585.3:c.829C>T	p.Arg277Cys	p.R277C	ENST00000398585	NM_001135099.1	277	Cgc/Tgc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413710	138413710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	28	398	0	ENST00000289153.2:c.1810del	p.Arg604GlyfsTer4	p.R604Gfs*4	ENST00000289153	NM_006219.2	604	Cgg/gg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149495351	149495351	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373655593		P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	27	465	0	ENST00000261799.4:c.3296C>T	p.Ala1099Val	p.A1099V	ENST00000261799	NM_002609.3	1099	gCg/gTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342775	118342775	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	54	483	0	ENST00000534358.1:c.901C>T	p.Arg301Ter	p.R301*	ENST00000534358	NM_005933.3	301	Cga/Tga																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7976267	7976267	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1366953758		P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	95	401	0	ENST00000319144.4:c.1928G>A	p.Arg643Gln	p.R643Q	ENST00000319144	NM_001139.2	643	cGg/cAg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17950344	17950344	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	36	520	0	ENST00000458235.1:c.1383del	p.Leu462CysfsTer3	p.L462Cfs*3	ENST00000458235	NM_000215.3	461	ggG/gg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256528	16256528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	33	550	0	ENST00000375759.3:c.3793C>T	p.Arg1265Ter	p.R1265*	ENST00000375759	NM_015001.2	1265	Cga/Tga																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78829285	78829285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	77	427	0	ENST00000306801.3:c.1336C>T	p.Arg446Trp	p.R446W	ENST00000306801	NM_020761.2	446	Cgg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5219955	5219955	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1405757941		P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	31	469	0	ENST00000357368.4:c.3760G>A	p.Glu1254Lys	p.E1254K	ENST00000357368	NM_002850.3	1254	Gag/Aag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348056	348056	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758201257		P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	33	646	0	ENST00000262320.3:c.1450C>T	p.Arg484Cys	p.R484C	ENST00000262320	NM_003502.3	484	Cgc/Tgc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89828358	89828358	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs755546887		P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	19	221	0	ENST00000389301.3:c.2851C>T	p.Arg951Trp	p.R951W	ENST00000389301	NM_000135.2	951	Cgg/Tgg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65348959	65348959	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	80	400	0	ENST00000342505.4:c.205+1G>A		p.X69_splice	ENST00000342505	NM_002227.2	69																																																																																
TERT	7015	MSKCC	GRCh37	5	1264549	1264549	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199741493		P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	101	530	0	ENST00000310581.5:c.2813G>A	p.Arg938Gln	p.R938Q	ENST00000310581	NM_198253.2	938	cGg/cAg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798418	32798418	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776413811		P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	33	547	0	ENST00000374899.4:c.1438C>T	p.Arg480Cys	p.R480C	ENST00000374899	NM_018833.2	480	Cgc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256400	16256402	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs767724849		P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	170	599	0	ENST00000375759.3:c.3670_3672del	p.Pro1224del	p.P1224del	ENST00000375759	NM_015001.2	1222	tCTCct/tct																																																																															
TSHR	7253	MSKCC	GRCh37	14	81563000	81563000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	79	437	0	ENST00000298171.2:c.563G>A	p.Gly188Asp	p.G188D	ENST00000298171	NM_000369.2	188	gGc/gAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134252	11134252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	24	436	0	ENST00000344626.4:c.2918G>A	p.Arg973Gln	p.R973Q	ENST00000344626	NM_003072.3	973	cGg/cAg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944151	71944151	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1456428824		P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	114	610	1	ENST00000298229.2:c.1984C>T	p.Arg662Cys	p.R662C	ENST00000298229	NM_001567.3	662	Cgc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42028862	42028862	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	152	518	0	ENST00000219905.7:c.4400G>A	p.Arg1467His	p.R1467H	ENST00000219905	NM_001164273.1	1467	cGt/cAt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843500	156843500	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1300360657		P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	71	613	0	ENST00000524377.1:c.926C>T	p.Pro309Leu	p.P309L	ENST00000524377	NM_002529.3	309	cCg/cTg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40872332	40872332	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	38	434	0	ENST00000428826.2:c.623A>G	p.Asp208Gly	p.D208G	ENST00000428826		208	gAt/gGt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660691	227660691	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	37	612	0	ENST00000305123.5:c.2764A>G	p.Arg922Gly	p.R922G	ENST00000305123	NM_005544.2	922	Agg/Ggg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288679	15288680	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	70	369	1	ENST00000263388.2:c.4059_4060delinsTT	p.Pro1354Ser	p.P1354S	ENST00000263388	NM_000435.2	1353	gcGCcg/gcTTcg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89456509	89456509	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	24	354	0	ENST00000336596.2:c.1688del	p.Leu563Ter	p.L563*	ENST00000336596	NM_005233.5	562	gTt/gt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59770802	59770802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	26	330	0	ENST00000259008.2:c.2564G>A	p.Arg855His	p.R855H	ENST00000259008	NM_032043.2	855	cGc/cAc																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778092	27778092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	83	688	0	ENST00000369163.2:c.241A>G	p.Thr81Ala	p.T81A	ENST00000369163	NM_003536.2	81	Acc/Gcc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332658	70332658	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	33	380	0	ENST00000373644.4:c.563C>G	p.Thr188Arg	p.T188R	ENST00000373644	NM_030625.2	188	aCa/aGa																																																																															
IRF4	3662	MSKCC	GRCh37	6	393215	393216	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	106	504	0	ENST00000380956.4:c.66dup	p.Lys23GlufsTer56	p.K23Efs*56	ENST00000380956	NM_001195286.1	21	-/G																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99456367	99456367	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	103	532	0	ENST00000268035.6:c.1684del	p.Val562TrpfsTer10	p.V562Wfs*10	ENST00000268035	NM_000875.3	562	Gtg/tg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562991	21562991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	64	615	0	ENST00000382592.4:c.928G>A	p.Gly310Arg	p.G310R	ENST00000382592	NM_014572.2	310	Ggg/Agg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968180	134968180	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0079445-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	31	563	0	ENST00000398015.3:c.2693C>T	p.Pro898Leu	p.P898L	ENST00000398015	NM_004441.4	898	cCt/cTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830275	72830276	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079445-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	39	577	0	ENST00000268489.5:c.6305dup	p.Met2102IlefsTer54	p.M2102Ifs*54	ENST00000268489	NM_006885.3	2102	atg/atTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2105479	2105479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	250	355	1	ENST00000219476.3:c.558C>A	p.Phe186Leu	p.F186L	ENST00000219476	NM_000548.3	186	ttC/ttA																																																																															
ATRX	546	MSKCC	GRCh37	X	76778784	76778785	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0079446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	130	454	0	ENST00000373344.5:c.6794dup	p.Leu2266ValfsTer3	p.L2266Vfs*3	ENST00000373344	NM_000489.3	2265	gag/gaAg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575346	64575364	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGGGAGGGAACAATACCC	GGGGGAGGGAACAATACCC	-			P-0079446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	301	543	0	ENST00000337652.1:c.668_669+17del		p.X223_splice	ENST00000337652	NM_130803.2	223																																																																																
AKT3	10000	MSKCC	GRCh37	1	243727030	243727030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	119	329	0	ENST00000263826.5:c.940G>A	p.Ala314Thr	p.A314T	ENST00000263826	NM_005465.4	314	Gca/Aca																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0077575-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	78	363	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589581	67589583	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0077575-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			128	37	371	0	ENST00000274335.5:c.1345_1347del	p.Leu449del	p.L449del	ENST00000274335		448	aaATTa/aaa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370714	55370714	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1429058725		P-0077575-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	171	479	1	ENST00000297316.4:c.16G>A	p.Ala6Thr	p.A6T	ENST00000297316	NM_022454.3	6	Gcg/Acg																																																																															
GAB1	2549	MSKCC	GRCh37	4	144336729	144336729	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1363184155		P-0079100-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			78	32	411	0	ENST00000262994.4:c.172C>T	p.Arg58Cys	p.R58C	ENST00000262994	NM_002039.3	58	Cgt/Tgt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061192	38061192	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	17	540	0	ENST00000250448.2:c.797del	p.Phe266SerfsTer55	p.F266Sfs*55	ENST00000250448	NM_004496.3	266	tTc/tc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56878430	56878430	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771046738		P-0079433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	193	499	0	ENST00000308159.5:c.2369G>A	p.Arg790His	p.R790H	ENST00000308159	NM_014669.4	790	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0079433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	191	542	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0079433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	101	646	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735467	40735467	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776642212		P-0079433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	107	509	0	ENST00000373198.4:c.3406C>T	p.Arg1136Cys	p.R1136C	ENST00000373198	NM_133170.3	1136	Cgt/Tgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484261	57484261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	140	432	0	ENST00000371085.3:c.575C>T	p.Pro192Leu	p.P192L	ENST00000371085	NM_000516.4	192	cCg/cTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245462	153245462	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0079433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	76	424	1	ENST00000281708.4:c.1729T>G	p.Leu577Val	p.L577V	ENST00000281708	NM_033632.3	577	Tta/Gta																																																																															
CUL3	8452	MSKCC	GRCh37	2	225378341	225378341	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	75	340	0	ENST00000264414.4:c.554A>G	p.Asn185Ser	p.N185S	ENST00000264414	NM_003590.4	185	aAt/aGt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0079434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	72	413	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0079434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	239	459	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0079434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	144	391	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0079434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	53	440	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670844	134670844	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	187	449	0	ENST00000398015.3:c.755G>T	p.Arg252Leu	p.R252L	ENST00000398015	NM_004441.4	252	cGa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0079435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	219	524	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0079435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	144	410	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0079435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	95	246	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	351	412	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0079435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	107	281	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ATM	472	MSKCC	GRCh37	11	108216550	108216551	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0079435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	85	343	0	ENST00000278616.4:c.8499_8500del	p.Phe2834LeufsTer13	p.F2834Lfs*13	ENST00000278616	NM_000051.3	2833	taCTtc/tatc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459735	149459735	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	47	581	0	ENST00000286301.3:c.472C>G	p.Pro158Ala	p.P158A	ENST00000286301	NM_005211.3	158	Ccc/Gcc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710540	114710540	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			699	217	431	0	ENST00000543371.1:c.28del	p.Asp10MetfsTer3	p.D10Mfs*3	ENST00000543371	NM_001198531.1	9	Ggg/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs786201838		P-0079438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	250	683	0	ENST00000269305.4:c.578A>C	p.His193Pro	p.H193P	ENST00000269305	NM_001126112.2	193	cAt/cCt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68939478	68939478	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139157434		P-0079438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	133	352	0	ENST00000288368.4:c.463C>T	p.Arg155Trp	p.R155W	ENST00000288368	NM_024870.2	155	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0079438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	104	307	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FYN	2534	MSKCC	GRCh37	6	112041238	112041238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	148	531	0	ENST00000368678.4:c.17G>T	p.Cys6Phe	p.C6F	ENST00000368678		6	tGt/tTt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227945	53227945	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0079438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	196	592	0	ENST00000375401.3:c.2368+1G>A		p.X790_splice	ENST00000375401	NM_004187.3	790																																																																																
POT1	25913	MSKCC	GRCh37	7	124511035	124511035	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	116	344	0	ENST00000357628.3:c.185T>C	p.Phe62Ser	p.F62S	ENST00000357628	NM_015450.2	62	tTt/tCt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265567	41266492	+	splice_donor_variant,splice_acceptor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	CTCAAGGTTTGTGTCATTAAATCTTTAGTTACTGAATTGGGGCTCTGCTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTG	CTCAAGGTTTGTGTCATTAAATCTTTAGTTACTGAATTGGGGCTCTGCTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTG	-			P-0079438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	306	314	0	ENST00000349496.5:c.10_291del		p.X4_splice	ENST00000349496	NM_001904.3	4	aCTCAAGGTTTGTGTCATTAAATCTTTAGTTACTGAATTGGGGCTCTGCTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGct/act																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715624	30715624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	210	447	0	ENST00000359013.4:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000359013	NM_001024847.2	453	Gaa/Aaa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47639690	47639690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	39	299	0	ENST00000233146.2:c.783G>A	p.Met261Ile	p.M261I	ENST00000233146	NM_000251.2	261	atG/atA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259516	+	missense_variant	Missense_Mutation	DNP	TG	TG	GT	rs1057519848		P-0079439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	94	516	2	ENST00000275493.2:c.2573_2574delinsGT	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTG/cGT																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966594	36966594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	48	524	0	ENST00000358127.4:c.732G>T	p.Gln244His	p.Q244H	ENST00000358127	NM_001280556.1	244	caG/caT																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47425115	47425115	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	24	607	0	ENST00000404338.3:c.3183A>T	p.Gln1061His	p.Q1061H	ENST00000404338	NM_004491.4	1061	caA/caT																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562457	176562457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	50	644	0	ENST00000439151.2:c.353C>G	p.Pro118Arg	p.P118R	ENST00000439151	NM_022455.4	118	cCt/cGt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032542	47032555	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTCGCACGGCGT	CAGTCGCACGGCGT	-			P-0079439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	75	532	0	ENST00000329236.7:c.217_230del	p.Gln73AlafsTer25	p.Q73Afs*25	ENST00000329236	NM_001204466.1	73	CAGTCGCACGGCGTg/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7578502	7578502	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	375	633	0	ENST00000269305.4:c.428T>C	p.Val143Ala	p.V143A	ENST00000269305	NM_001126112.2	143	gTg/gCg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603040	48603064	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCAGCAGGCGGCTACTGCACAA	GCAGCAGCAGGCGGCTACTGCACAA	-			P-0079443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	26	400	0	ENST00000342988.3:c.1343_1367del	p.Gln448LeufsTer20	p.Q448Lfs*20	ENST00000342988	NM_005359.5	447	atGCAGCAGCAGGCGGCTACTGCACAA/at																																																																															
APC	324	MSKCC	GRCh37	5	112174286	112174286	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	145	516	0	ENST00000257430.4:c.2995C>T	p.Gln999Ter	p.Q999*	ENST00000257430	NM_000038.5	999	Caa/Taa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31468140	31468140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	99	480	0	ENST00000344624.3:c.2272G>T	p.Asp758Tyr	p.D758Y	ENST00000344624		758	Gat/Tat																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281856	39281856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	49	337	0	ENST00000402219.2:c.619G>A	p.Ala207Thr	p.A207T	ENST00000402219	NM_005633.3	207	Gca/Aca																																																																															
TET1	80312	MSKCC	GRCh37	10	70332534	70332534	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	84	486	0	ENST00000373644.4:c.439G>C	p.Ala147Pro	p.A147P	ENST00000373644	NM_030625.2	147	Gct/Cct																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67590440	67590464	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAGCGGTACAGCAAAGAATACAT	AAGAGCGGTACAGCAAAGAATACAT	-			P-0077939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	39	312	0	ENST00000274335.5:c.1503_1527del	p.Glu502LysfsTer22	p.E502Kfs*22	ENST00000274335		501	cAAGAGCGGTACAGCAAAGAATACATa/ca																																																																															
TOP1	7150	MSKCC	GRCh37	20	39744019	39744019	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	34	275	0	ENST00000361337.2:c.1647G>T	p.Lys549Asn	p.K549N	ENST00000361337	NM_003286.2	549	aaG/aaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0079322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	46	207	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
XIAP	331	MSKCC	GRCh37	X	123034496	123034496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	31	193	0	ENST00000355640.3:c.1253A>G	p.Gln418Arg	p.Q418R	ENST00000355640		418	cAg/cGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445860	49445860	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	67	482	0	ENST00000301067.7:c.1606del	p.Leu536TyrfsTer394	p.L536Yfs*394	ENST00000301067	NM_003482.3	536	Cta/ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0079326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	231	374	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0079326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	183	240	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457371	67457373	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0079326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	173	365	0	ENST00000327367.4:c.349_351del	p.Lys117del	p.K117del	ENST00000327367	NM_005902.3	115	atGAAg/atg																																																																															
RAC2	5880	MSKCC	GRCh37	22	37622771	37622771	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs542730360		P-0079326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	181	326	0	ENST00000249071.6:c.521G>A	p.Arg174Gln	p.R174Q	ENST00000249071	NM_002872.4	174	cGg/cAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40757468	40757468	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0079326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	292	334	0	ENST00000373198.4:c.2830G>A	p.Asp944Asn	p.D944N	ENST00000373198	NM_133170.3	944	Gac/Aac																																																																															
APC	324	MSKCC	GRCh37	5	112178803	112178803	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	121	372	0	ENST00000257430.4:c.7512G>A	p.Trp2504Ter	p.W2504*	ENST00000257430	NM_000038.5	2504	tgG/tgA																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231494	5231494	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	226	309	0	ENST00000357368.4:c.1982T>C	p.Leu661Pro	p.L661P	ENST00000357368	NM_002850.3	661	cTg/cCg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103520484	103520484	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0079326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	164	233	0	ENST00000355739.4:c.2555T>A	p.Ile852Lys	p.I852K	ENST00000355739	NM_000123.3	852	aTa/aAa																																																																															
APC	324	MSKCC	GRCh37	5	112173537	112173538	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0079326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	124	351	0	ENST00000257430.4:c.2247dup	p.Pro750AlafsTer6	p.P750Afs*6	ENST00000257430	NM_000038.5	749	ttg/ttGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0078557-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			369	214	252	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0078557-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			415	130	331	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0078557-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			515	39	290	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
RIT1	6016	MSKCC	GRCh37	1	155880497	155880497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078557-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			649	113	303	0	ENST00000368323.3:c.56C>T	p.Ser19Leu	p.S19L	ENST00000368323	NM_006912.5	19	tCa/tTa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573643	48573643	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078557-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			356	127	273	0	ENST00000342988.3:c.227G>T	p.Arg76Ile	p.R76I	ENST00000342988	NM_005359.5	76	aGa/aTa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805954	32805954	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078557-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			529	162	339	0	ENST00000374899.4:c.57A>C	p.Leu19Phe	p.L19F	ENST00000374899	NM_018833.2	19	ttA/ttC																																																																															
SETD8	387893	MSKCC	GRCh37	12	123880934	123880934	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079320-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			518	29	307	0	ENST00000330479.4:c.552C>G	p.Phe184Leu	p.F184L	ENST00000330479	NM_020382.3	184	ttC/ttG																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46511748	46511748	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079320-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			282	18	248	0	ENST00000262741.5:c.1029C>G	p.Ile343Met	p.I343M	ENST00000262741	NM_003629.3	343	atC/atG																																																																															
AR	367	MSKCC	GRCh37	X	66937326	66937326	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137852593		P-0079379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	71	297	0	ENST00000374690.3:c.2180G>A	p.Arg727His	p.R727H	ENST00000374690	NM_000044.3	727	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0079379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	239	404	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
ARHGAP35	2909	MSKCC	GRCh37	19	47422432	47422432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	89	358	0	ENST00000404338.3:c.500G>A	p.Ser167Asn	p.S167N	ENST00000404338	NM_004491.4	167	aGc/aAc																																																																															
LYN	4067	MSKCC	GRCh37	8	56879319	56879319	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	94	304	0	ENST00000519728.1:c.836C>G	p.Pro279Arg	p.P279R	ENST00000519728	NM_002350.3	279	cCa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs28934577		P-0079380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	309	402	0	ENST00000269305.4:c.770T>A	p.Leu257Gln	p.L257Q	ENST00000269305	NM_001126112.2	257	cTg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0079380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	334	322	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18649027	18649027	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	110	343	0	ENST00000266497.5:c.2702C>G	p.Pro901Arg	p.P901R	ENST00000266497		901	cCa/cGa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197794	66197794	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0079380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	141	367	0	ENST00000273854.3:c.2905T>G	p.Ser969Ala	p.S969A	ENST00000273854	NM_004439.5	969	Tca/Gca																																																																															
MTOR	2475	MSKCC	GRCh37	1	11291380	11291380	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	117	420	0	ENST00000361445.4:c.2626C>A	p.Gln876Lys	p.Q876K	ENST00000361445	NM_004958.3	876	Cag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0079382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	53	284	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	150	367	1	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952146	178952147	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	115	279	0	ENST00000263967.3:c.3203dup	p.Asn1068LysfsTer5	p.N1068Kfs*5	ENST00000263967	NM_006218.2	1067	-/A																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920402	114920402	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs927089403		P-0079382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	186	306	0	ENST00000543371.1:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000543371	NM_001198531.1	448	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578471	7578471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	192	441	0	ENST00000269305.4:c.459del	p.Gly154AlafsTer16	p.G154Afs*16	ENST00000269305	NM_001126112.2	153	ccC/cc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45805924	45805924	+	start_lost	Translation_Start_Site	SNP	C	C	T	rs757906591		P-0079382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	58	335	0	ENST00000372115.3:c.3G>A	p.Met1?	p.M1?	ENST00000372115	NM_001048171.1	1	atG/atA																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46267863	46267863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	183	366	0	ENST00000371998.3:c.2624C>T	p.Ala875Val	p.A875V	ENST00000371998		875	gCt/gTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249008	55249009	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGACGG			P-0079383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	102	345	0	ENST00000275493.2:c.2310_2311insGGGGAC	p.Asp770_Asn771insGlyAsp	p.D770_N771insGD	ENST00000275493	NM_005228.3	769	gtg/gtGGACGGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	130	208	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133263850	133263850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	71	291	0	ENST00000320574.5:c.52G>A	p.Glu18Lys	p.E18K	ENST00000320574	NM_006231.2	18	Gag/Aag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86674234	86674234	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	103	294	0	ENST00000274376.6:c.2366G>C	p.Arg789Pro	p.R789P	ENST00000274376	NM_002890.2	789	cGa/cCa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86676366	86676366	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	90	274	0	ENST00000274376.6:c.2644C>T	p.Gln882Ter	p.Q882*	ENST00000274376	NM_002890.2	882	Cag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108196791	108196791	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886039471		P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	75	228	0	ENST00000278616.4:c.6814G>A	p.Glu2272Lys	p.E2272K	ENST00000278616	NM_000051.3	2272	Gaa/Aaa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932369	39932369	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	129	374	0	ENST00000378444.4:c.2230G>C	p.Glu744Gln	p.E744Q	ENST00000378444	NM_001123385.1	744	Gag/Cag																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870853	12870853	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	15	322	0	ENST00000228872.4:c.80C>A	p.Ser27Ter	p.S27*	ENST00000228872	NM_004064.3	27	tCg/tAg																																																																															
TET1	80312	MSKCC	GRCh37	10	70451152	70451152	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	151	379	0	ENST00000373644.4:c.5992G>T	p.Glu1998Ter	p.E1998*	ENST00000373644	NM_030625.2	1998	Gag/Tag																																																																															
STAT3	6774	MSKCC	GRCh37	17	40478175	40478175	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	110	190	0	ENST00000264657.5:c.1324G>C	p.Glu442Gln	p.E442Q	ENST00000264657	NM_139276.2	442	Gag/Cag																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143130100	143130100	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	84	237	0	ENST00000262992.4:c.916C>T	p.Gln306Ter	p.Q306*	ENST00000262992	NM_001101669.1	306	Caa/Taa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732963	30732963	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121918714		P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	184	364	0	ENST00000359013.4:c.1651G>C	p.Glu551Gln	p.E551Q	ENST00000359013	NM_001024847.2	551	Gag/Cag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640413	3640413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	238	422	0	ENST00000294008.3:c.3226C>T	p.Pro1076Ser	p.P1076S	ENST00000294008	NM_032444.2	1076	Cca/Tca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874026	151874026	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	138	305	0	ENST00000262189.6:c.8512G>T	p.Glu2838Ter	p.E2838*	ENST00000262189	NM_170606.2	2838	Gaa/Taa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176015337	176015337	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	96	234	0	ENST00000367669.3:c.1401G>T	p.Met467Ile	p.M467I	ENST00000367669	NM_022457.5	467	atG/atT																																																																															
TEK	7010	MSKCC	GRCh37	9	27206694	27206694	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	171	314	0	ENST00000380036.4:c.2479C>G	p.Gln827Glu	p.Q827E	ENST00000380036	NM_000459.3	827	Caa/Gaa																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67196044	67196044	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	18	253	0	ENST00000312629.5:c.28G>C	p.Glu10Gln	p.E10Q	ENST00000312629	NM_003952.2	10	Gag/Cag																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78519568	78519568	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	70	336	0	ENST00000306801.3:c.139C>T	p.Gln47Ter	p.Q47*	ENST00000306801	NM_020761.2	47	Cag/Tag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932112	39932112	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	133	387	0	ENST00000378444.4:c.2487G>C	p.Glu829Asp	p.E829D	ENST00000378444	NM_001123385.1	829	gaG/gaC																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200094	67200094	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	17	350	0	ENST00000312629.5:c.481G>T	p.Glu161Ter	p.E161*	ENST00000312629	NM_003952.2	161	Gag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098956	47098956	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	125	299	0	ENST00000409792.3:c.6318G>C	p.Lys2106Asn	p.K2106N	ENST00000409792	NM_014159.6	2106	aaG/aaC																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21351591	21351591	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	117	350	0	ENST00000215739.8:c.2477C>G	p.Ser826Cys	p.S826C	ENST00000215739	NM_006767.3	826	tCc/tGc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28959108	28959108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	133	311	0	ENST00000282397.4:c.2030C>T	p.Ser677Phe	p.S677F	ENST00000282397	NM_002019.4	677	tCc/tTc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027380	48027380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	94	304	0	ENST00000234420.5:c.2258C>A	p.Ser753Tyr	p.S753Y	ENST00000234420	NM_000179.2	753	tCt/tAt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803393	1803393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	87	476	0	ENST00000260795.2:c.662C>T	p.Ser221Leu	p.S221L	ENST00000260795		221	tCg/tTg																																																																															
AR	367	MSKCC	GRCh37	X	66942816	66942816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	111	260	0	ENST00000374690.3:c.2597C>T	p.Ser866Phe	p.S866F	ENST00000374690	NM_000044.3	866	tCc/tTc																																																																															
CDH1	999	MSKCC	GRCh37	16	68842686	68842686	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	36	319	0	ENST00000261769.5:c.622G>C	p.Glu208Gln	p.E208Q	ENST00000261769	NM_004360.3	208	Gaa/Caa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198260882	198260882	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	133	320	0	ENST00000335508.6:c.3437G>C	p.Gly1146Ala	p.G1146A	ENST00000335508	NM_012433.2	1146	gGa/gCa																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206650087	206650087	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	125	462	0	ENST00000367120.3:c.607G>C	p.Asp203His	p.D203H	ENST00000367120	NM_014002.3	203	Gat/Cat																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67196032	67196032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	18	252	0	ENST00000312629.5:c.16G>A	p.Asp6Asn	p.D6N	ENST00000312629	NM_003952.2	6	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578400	7578400	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs751477326		P-0071817-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			18	121	252	0	ENST00000269305.4:c.530C>G	p.Pro177Arg	p.P177R	ENST00000269305	NM_001126112.2	177	cCc/cGc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880997	37880998	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TAT			P-0071817-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			79	868	262	0	ENST00000269571.5:c.2326_2327insTAT	p.Gly776delinsValCys	p.G776delinsVC	ENST00000269571		776	ggt/gTATgt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644597	21644597	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071817-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			149	110	331	0	ENST00000421138.2:c.70C>G	p.Gln24Glu	p.Q24E	ENST00000421138		24	Caa/Gaa																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346247	152346247	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071817-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			384	130	312	0	ENST00000359321.1:c.323T>A	p.Ile108Asn	p.I108N	ENST00000359321	NM_005431.1	108	aTc/aAc																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86545089	86545089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071817-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			129	73	256	0	ENST00000262426.4:c.914C>A	p.Ser305Tyr	p.S305Y	ENST00000262426	NM_001451.2	305	tCc/tAc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170146	32170147	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	A			P-0071817-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			204	89	273	0	ENST00000375023.3:c.3461_3462delinsT	p.Gly1154ValfsTer150	p.G1154Vfs*150	ENST00000375023	NM_004557.3	1154	gGC/gT																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870929	12870929	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075557-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			510	186	463	1	ENST00000228872.4:c.157del	p.Glu53LysfsTer18	p.E53Kfs*18	ENST00000228872	NM_004064.3	52	atG/at																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178342	56178343	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075557-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			153	145	314	0	ENST00000399503.3:c.3316dup	p.Ile1106AsnfsTer4	p.I1106Nfs*4	ENST00000399503	NM_005921.1	1105	-/A																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075557-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			121	47	262	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111501	8111501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075557-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			376	190	408	0	ENST00000346208.3:c.987G>T	p.Arg329Ser	p.R329S	ENST00000346208		329	agG/agT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927975	178927986	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	AACACTGTCCAT	AACACTGTCCAT	-			P-0075557-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			44	92	264	1	ENST00000263967.3:c.1253_1264del	p.Glu418_Leu422delinsVal	p.E418_L422delinsV	ENST00000263967	NM_006218.2	418	gAACACTGTCCATtg/gtg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64571961	64571961	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075557-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	155	533	0	ENST00000337652.1:c.1693G>C	p.Gly565Arg	p.G565R	ENST00000337652	NM_130803.2	565	Ggc/Cgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151880241	151880241	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0075557-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			130	86	310	0	ENST00000262189.6:c.5083C>T	p.Gln1695Ter	p.Q1695*	ENST00000262189	NM_170606.2	1695	Caa/Taa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168815	56168816	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0075557-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	130	338	1	ENST00000399503.3:c.1670dup	p.Glu558Ter	p.E558*	ENST00000399503	NM_005921.1	557	gct/gCct																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396466	139396466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075557-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			418	182	507	1	ENST00000277541.6:c.5459C>T	p.Thr1820Ile	p.T1820I	ENST00000277541	NM_017617.3	1820	aCc/aTc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259358	36259382	+	frameshift_variant	Frame_Shift_Del	DEL	TGGAAGGCGGCGTGAAGCGGCGGCT	TGGAAGGCGGCGTGAAGCGGCGGCT	AC			P-0075557-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			408	136	421	0	ENST00000300305.3:c.109_133delinsGT	p.Ser37ValfsTer93	p.S37Vfs*93	ENST00000300305		37	AGCCGCCGCTTCACGCCGCCTTCCAcc/GTcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0076762-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			258	124	449	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44833925	44833925	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076762-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			189	43	230	0	ENST00000377967.4:c.349C>T	p.Gln117Ter	p.Q117*	ENST00000377967	NM_021140.2	117	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076762-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			256	78	266	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0079008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	371	526	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17940991	17940991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	217	399	0	ENST00000458235.1:c.3133C>T	p.Pro1045Ser	p.P1045S	ENST00000458235	NM_000215.3	1045	Ccc/Tcc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40456649	40456649	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0079008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			778	42	445	0	ENST00000345506.4:c.1359T>G	p.Asn453Lys	p.N453K	ENST00000345506	NM_003152.3	453	aaT/aaG																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772978	135772978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	119	309	2	ENST00000298552.3:c.2645C>T	p.Ala882Val	p.A882V	ENST00000298552	NM_001162426.1	882	gCc/gTc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845419	156845419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1235	240	563	0	ENST00000524377.1:c.1462G>A	p.Gly488Ser	p.G488S	ENST00000524377	NM_002529.3	488	Ggc/Agc																																																																															
ERF	2077	MSKCC	GRCh37	19	42754613	42754613	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			709	58	399	0	ENST00000222329.4:c.127C>T	p.Gln43Ter	p.Q43*	ENST00000222329	NM_006494.2	43	Cag/Tag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	91	350	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934571		P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			308	151	333	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250508	110250508	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			280	179	326	0	ENST00000374672.4:c.167del	p.Pro56GlnfsTer58	p.P56Qfs*58	ENST00000374672	NM_004235.4	56	cCa/ca																																																																															
ALK	238	MSKCC	GRCh37	2	29451881	29451881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			418	58	337	0	ENST00000389048.3:c.2684C>A	p.Ser895Tyr	p.S895Y	ENST00000389048	NM_004304.4	895	tCt/tAt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741733	17741733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			361	152	368	0	ENST00000250003.3:c.404G>T	p.Cys135Phe	p.C135F	ENST00000250003	NM_002478.4	135	tGc/tTc																																																																															
ALK	238	MSKCC	GRCh37	2	29498343	29498343	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61744521		P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			421	94	382	0	ENST00000389048.3:c.1837G>A	p.Ala613Thr	p.A613T	ENST00000389048	NM_004304.4	613	Gca/Aca																																																																															
RET	5979	MSKCC	GRCh37	10	43612115	43612115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			425	172	421	0	ENST00000355710.3:c.2220G>T	p.Lys740Asn	p.K740N	ENST00000355710	NM_020975.4	740	aaG/aaT																																																																															
DICER1	23405	MSKCC	GRCh37	14	95574310	95574310	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs61729795		P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			591	267	354	0	ENST00000343455.3:c.2557A>G	p.Ile853Val	p.I853V	ENST00000343455	NM_177438.2	853	Ata/Gta																																																																															
BRCA1	672	MSKCC	GRCh37	17	41226485	41226485	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			548	172	401	0	ENST00000357654.3:c.4538G>C	p.Cys1513Ser	p.C1513S	ENST00000357654	NM_007294.3	1513	tGc/tCc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085885	16085885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			439	69	374	0	ENST00000281043.3:c.1061C>A	p.Ala354Glu	p.A354E	ENST00000281043	NM_005378.4	354	gCg/gAg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445078	89445079	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	144	420	1	ENST00000336596.2:c.1398_1399delinsAT	p.Ile467Leu	p.I467L	ENST00000336596	NM_005233.5	466	atCAta/atATta																																																																															
PARP1	142	MSKCC	GRCh37	1	226558168	226558168	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			335	175	382	0	ENST00000366794.5:c.2121G>T	p.Gln707His	p.Q707H	ENST00000366794	NM_001618.3	707	caG/caT																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458756	120458756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			586	77	508	0	ENST00000256646.2:c.6589C>T	p.His2197Tyr	p.H2197Y	ENST00000256646	NM_024408.3	2197	Cat/Tat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636727	8636728	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	249	376	0	ENST00000356435.5:c.181_182delinsTT	p.Gly61Leu	p.G61L	ENST00000356435		61	GGa/TTa																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250439	110250439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			338	169	402	0	ENST00000374672.4:c.236C>A	p.Ala79Asp	p.A79D	ENST00000374672	NM_004235.4	79	gCc/gAc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979575	7979575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			298	148	375	0	ENST00000319144.4:c.1450G>A	p.Asp484Asn	p.D484N	ENST00000319144	NM_001139.2	484	Gac/Aac																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645108	86645108	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			367	201	358	0	ENST00000274376.6:c.1180G>T	p.Glu394Ter	p.E394*	ENST00000274376	NM_002890.2	394	Gaa/Taa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120510209	120510209	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			589	120	380	0	ENST00000256646.2:c.1300G>C	p.Val434Leu	p.V434L	ENST00000256646	NM_024408.3	434	Gtg/Ctg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949158	71949158	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			576	225	501	0	ENST00000298229.2:c.3625G>T	p.Gly1209Cys	p.G1209C	ENST00000298229	NM_001567.3	1209	Ggc/Tgc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413048	63413048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			190	196	221	0	ENST00000330258.3:c.119C>T	p.Pro40Leu	p.P40L	ENST00000330258	NM_152424.3	40	cCa/cTa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803455	32803455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			314	266	390	0	ENST00000374899.4:c.704G>C	p.Arg235Pro	p.R235P	ENST00000374899	NM_018833.2	235	cGc/cCc																																																																															
CD276	80381	MSKCC	GRCh37	15	73994641	73994642	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	101	488	0	ENST00000318443.5:c.128dup	p.Thr44HisfsTer12	p.T44Hfs*12	ENST00000318443	NM_001024736.1	42	gtg/gtGg																																																																															
HGF	3082	MSKCC	GRCh37	7	81339535	81339535	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			495	191	331	0	ENST00000222390.5:c.1469C>G	p.Thr490Arg	p.T490R	ENST00000222390	NM_000601.4	490	aCg/aGg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728934	190728934	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			567	251	401	0	ENST00000441310.2:c.2322G>T	p.Lys774Asn	p.K774N	ENST00000441310	NM_000534.4	774	aaG/aaT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93955130	93955130	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			471	64	342	0	ENST00000369303.4:c.2768C>G	p.Thr923Ser	p.T923S	ENST00000369303	NM_004440.3	923	aCt/aGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29687529	29687529	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			513	157	334	0	ENST00000358273.4:c.8185G>T	p.Glu2729Ter	p.E2729*	ENST00000358273	NM_001042492.2	2729	Gag/Tag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713846	30713853	+	frameshift_variant	Frame_Shift_Del	DEL	CTAACCTG	CTAACCTG	-			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			476	107	445	0	ENST00000359013.4:c.1248_1255del	p.Thr417ProfsTer3	p.T417Pfs*3	ENST00000359013	NM_001024847.2	416	CTAACCTGc/c																																																																															
MGA	23269	MSKCC	GRCh37	15	42019539	42019539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			526	128	430	0	ENST00000219905.7:c.3592G>T	p.Val1198Leu	p.V1198L	ENST00000219905	NM_001164273.1	1198	Gtg/Ttg																																																																															
ALB	213	MSKCC	GRCh37	4	74283826	74283826	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	72	333	0	ENST00000295897.4:c.1451del	p.Leu484TyrfsTer10	p.L484Yfs*10	ENST00000295897	NM_000477.5	484	Tta/ta																																																																															
NF1	4763	MSKCC	GRCh37	17	29664589	29664589	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0079198-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			559	173	348	0	ENST00000358273.4:c.6631G>T	p.Glu2211Ter	p.E2211*	ENST00000358273	NM_001042492.2	2211	Gag/Tag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0079250-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	197	231	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0079250-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	175	295	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187535489	187535489	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079250-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	95	215	0	ENST00000441802.2:c.9085T>C	p.Ser3029Pro	p.S3029P	ENST00000441802	NM_005245.3	3029	Tca/Cca																																																																															
RAD21	5885	MSKCC	GRCh37	8	117867768	117868543	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAAAGGCAAATTCTAAGAGTGCATAAAATTTTTAAAAAAATTTCTTCTTGAAGAGACAGGTCTTACTATATTTACTGCCCAAGCTGGTCTCAAACTCCTGGCCTCAAGTGGTTTTCCTGCTTGGGCCTCCCAAAGTACTGGATTACAAGTGTGAGCCACCACACCAGCCTCTAGTTTTGTTTTTTTTTTAAAAAGAATACTTTTAGTTTTTTCCAGCTCGTAGACCAACTGCACAGCATTTAGAATTGTACTTTATTGAAAAAAGCTTTCCAATGTTTTCCAGTTGTTACACAAGTAAGCTGCTAACTTTCTGGGAACCCCAGGAGACTAAGATATGCATTATCAGAAAGCTTGTTCTATACTTTTGTATTTCACAGCAACTTGCACAGACATTCTACAAAATACTCAAAATTATAATTGGATAGAAGAAAGACTCTATGACAGATGACTGTGACATAAAAGCAAGAAGCTAGTTAACTAAAGCAACAGTAGCAGATCAGTAGACAGGCCAAAAAAACAGAAAAAAGCAAGAAGCCTAGTTATCTAATACAACAGTAGCAGATCAGTAGACAGGCAAAAACCAGAAATAGGACCTTATGTTGTATGCTGTATAAATCTAAAGGTTCATATGCTTACCAGTTATATCAATAGGCTCCAATGCAAATGCTTCTTCCTCATTTGGAACAAGTGTTGTTTGATCAGTCATGGTTGGCATTGGTTCAACGGGATCCACTGAATCAGGACTATCAGGCCCACCCACTGTAAAAAAAAAAAA	AAAAAGGCAAATTCTAAGAGTGCATAAAATTTTTAAAAAAATTTCTTCTTGAAGAGACAGGTCTTACTATATTTACTGCCCAAGCTGGTCTCAAACTCCTGGCCTCAAGTGGTTTTCCTGCTTGGGCCTCCCAAAGTACTGGATTACAAGTGTGAGCCACCACACCAGCCTCTAGTTTTGTTTTTTTTTTAAAAAGAATACTTTTAGTTTTTTCCAGCTCGTAGACCAACTGCACAGCATTTAGAATTGTACTTTATTGAAAAAAGCTTTCCAATGTTTTCCAGTTGTTACACAAGTAAGCTGCTAACTTTCTGGGAACCCCAGGAGACTAAGATATGCATTATCAGAAAGCTTGTTCTATACTTTTGTATTTCACAGCAACTTGCACAGACATTCTACAAAATACTCAAAATTATAATTGGATAGAAGAAAGACTCTATGACAGATGACTGTGACATAAAAGCAAGAAGCTAGTTAACTAAAGCAACAGTAGCAGATCAGTAGACAGGCCAAAAAAACAGAAAAAAGCAAGAAGCCTAGTTATCTAATACAACAGTAGCAGATCAGTAGACAGGCAAAAACCAGAAATAGGACCTTATGTTGTATGCTGTATAAATCTAAAGGTTCATATGCTTACCAGTTATATCAATAGGCTCCAATGCAAATGCTTCTTCCTCATTTGGAACAAGTGTTGTTTGATCAGTCATGGTTGGCATTGGTTCAACGGGATCCACTGAATCAGGACTATCAGGCCCACCCACTGTAAAAAAAAAAAA	-			P-0079250-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			24	221	1	0	ENST00000297338.2:c.815-16_937+637del		p.X272_splice	ENST00000297338	NM_006265.2	272																																																																																
PREX2	80243	MSKCC	GRCh37	8	69009392	69009392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	278	294	0	ENST00000288368.4:c.2509G>A	p.Glu837Lys	p.E837K	ENST00000288368	NM_024870.2	837	Gaa/Aaa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817908	3817908	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0079260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	281	314	1	ENST00000262367.5:c.3063G>T	p.Met1021Ile	p.M1021I	ENST00000262367	NM_004380.2	1021	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0079261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	307	281	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0079261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	97	249	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370320	40370320	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs760876362		P-0079261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	125	233	0	ENST00000293328.3:c.1018C>G	p.Gln340Glu	p.Q340E	ENST00000293328	NM_012448.3	340	Cag/Gag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	443492	443492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	97	230	0	ENST00000399788.2:c.1405C>T	p.Pro469Ser	p.P469S	ENST00000399788	NM_001042603.1	469	Ccg/Tcg																																																																															
RB1	5925	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0079261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	41	184	0	ENST00000267163.4:c.1215+1G>C		p.X405_splice	ENST00000267163	NM_000321.2	405																																																																																
FOXL2	668	MSKCC	GRCh37	3	138665360	138665360	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	33	227	0	ENST00000330315.3:c.205G>C	p.Glu69Gln	p.E69Q	ENST00000330315	NM_023067.3	69	Gag/Cag																																																																															
AR	367	MSKCC	GRCh37	X	66766109	66766109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	58	262	0	ENST00000374690.3:c.1121C>T	p.Pro374Leu	p.P374L	ENST00000374690	NM_000044.3	374	cCg/cTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502298	157502298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	31	256	0	ENST00000346085.5:c.3331G>A	p.Gly1111Arg	p.G1111R	ENST00000346085	NM_020732.3	1111	Ggg/Agg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641317	23641317	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	42	285	0	ENST00000261584.4:c.2158A>G	p.Thr720Ala	p.T720A	ENST00000261584	NM_024675.3	720	Acc/Gcc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969336	44969336	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	36	210	0	ENST00000377967.4:c.4018G>C	p.Asp1340His	p.D1340H	ENST00000377967	NM_021140.2	1340	Gat/Cat																																																																															
MGA	23269	MSKCC	GRCh37	15	42032275	42032275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	83	289	2	ENST00000219905.7:c.4459G>A	p.Ala1487Thr	p.A1487T	ENST00000219905	NM_001164273.1	1487	Gca/Aca																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793456	18793457	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0079261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	39	223	0	ENST00000266497.5:c.4153_4154delinsAA	p.Pro1385Lys	p.P1385K	ENST00000266497		1385	CCa/AAa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245899	41245899	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0079261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	106	209	0	ENST00000357654.3:c.1649A>T	p.Asn550Ile	p.N550I	ENST00000357654	NM_007294.3	550	aAt/aTt																																																																															
MSH3	4437	MSKCC	GRCh37	5	80160683	80160683	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	36	250	0	ENST00000265081.6:c.3052G>C	p.Glu1018Gln	p.E1018Q	ENST00000265081	NM_002439.4	1018	Gaa/Caa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437687	52437687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	139	264	0	ENST00000460680.1:c.1474A>G	p.Ser492Gly	p.S492G	ENST00000460680	NM_004656.3	492	Agt/Ggt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514868	103514868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	62	270	0	ENST00000355739.4:c.1369C>T	p.His457Tyr	p.H457Y	ENST00000355739	NM_000123.3	457	Cac/Tac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409014	139409014	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0079261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	210	239	0	ENST00000277541.6:c.2155G>T	p.Glu719Ter	p.E719*	ENST00000277541	NM_017617.3	719	Gag/Tag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396920	396920	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	159	279	0	ENST00000262320.3:c.106G>C	p.Asp36His	p.D36H	ENST00000262320	NM_003502.3	36	Gac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934578		P-0079263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			32	17	429	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040653	47040653	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0079263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	23	352	0	ENST00000329236.7:c.1054G>T	p.Glu352Ter	p.E352*	ENST00000329236	NM_001204466.1	352	Gag/Tag																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867527	45867527	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	17	527	0	ENST00000391945.4:c.781G>C	p.Gly261Arg	p.G261R	ENST00000391945	NM_000400.3	261	Ggc/Cgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0079273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	39	295	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0079273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	70	301	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RB1	5925	MSKCC	GRCh37	13	48955449	48955450	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0079273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	87	354	0	ENST00000267163.4:c.1565_1566del	p.Asn522IlefsTer5	p.N522Ifs*5	ENST00000267163	NM_000321.2	522	aAT/a																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971090	21971090	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0079273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	67	418	0	ENST00000304494.5:c.268T>G	p.Phe90Val	p.F90V	ENST00000304494	NM_000077.4	90	Ttc/Gtc																																																																															
MED12	9968	MSKCC	GRCh37	X	70352042	70352043	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	88	484	0	ENST00000374080.3:c.4241dup	p.Pro1415AlafsTer20	p.P1415Afs*20	ENST00000374080		1413	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7578192	7578193	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCACCATA			P-0079273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	130	553	0	ENST00000269305.4:c.656_657insTATGGTGCC	p.Pro219_Tyr220insMetValPro	p.P219_Y220insMVP	ENST00000269305	NM_001126112.2	219	ccc/ccTATGGTGCCc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432508	49432509	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0079283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	25	433	0	ENST00000301067.7:c.8630_8631del	p.Phe2877TyrfsTer2	p.F2877Yfs*2	ENST00000301067	NM_003482.3	2877	tTC/t																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061227	38061228	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAC			P-0079283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	14	380	0	ENST00000250448.2:c.759_761dup	p.Met253_Phe254insLeu	p.M253_F254insL	ENST00000250448	NM_004496.3	254	ttc/ttGTTc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0079286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	193	394	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266069	41266101	+	inframe_deletion	In_Frame_Del	DEL	TAGTCACTGGCAGCAACAGTCTTACCTGGACTC	TAGTCACTGGCAGCAACAGTCTTACCTGGACTC	-			P-0079286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			73	531	445	0	ENST00000349496.5:c.67_99del	p.Ser23_Ser33del	p.S23_S33del	ENST00000349496	NM_001904.3	22	gtTAGTCACTGGCAGCAACAGTCTTACCTGGACTCt/gtt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944279	81944279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747373917		P-0079286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	204	421	0	ENST00000359376.3:c.1888C>T	p.Arg630Trp	p.R630W	ENST00000359376	NM_002661.3	630	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578464	7578476	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGCCGGGCGG	GGGTGCCGGGCGG	-	rs876659215		P-0079286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	231	502	0	ENST00000269305.4:c.454_466del	p.Pro152AlafsTer14	p.P152Afs*14	ENST00000269305	NM_001126112.2	152	CCGCCCGGCACCCgc/gc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068864	30068864	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0079286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	109	317	0	ENST00000331968.5:c.2065C>T	p.Gln689Ter	p.Q689*	ENST00000331968	NM_002742.2	689	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859392	151859393	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0079299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	231	409	0	ENST00000262189.6:c.11269_11270del	p.Gln3757GlufsTer18	p.Q3757Efs*18	ENST00000262189	NM_170606.2	3757	CAg/g																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151849913	151849913	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	221	393	0	ENST00000262189.6:c.12403G>C	p.Gly4135Arg	p.G4135R	ENST00000262189	NM_170606.2	4135	Ggt/Cgt																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62297378	62297378	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	T	T	C			P-0079299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	200	289	0	ENST00000482936.1:c.560T>C	p.Leu187Pro	p.L187P	ENST00000482936		187	cTg/cCg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793471	18793471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	83	276	0	ENST00000266497.5:c.4168C>A	p.Pro1390Thr	p.P1390T	ENST00000266497		1390	Ccc/Acc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248342	110249364	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAAGGGGTGTATTGAATTCCATATCATAAACAGAAATACATTCCGTGCTTAAGTATTTGGTCTTGTTTTTAGGGGGTCAGTTAAGCACACAACCACCACCTACACCTATACTAATGTTTCACCAAAAACACACAAACACCACCTAAACCTATACTAATGTTTCATTTGAGTCAAGGCATCTCAGTGGTGGAAATGAAATTTGGAAATTGTGATTGGTAGTGTGCCCAAACCATGCAATCTTATTCCTACTACGACTGGGGATAAAAAGCCACAGGTGGCTACTTTTTTTTTCTTTACCTTTACGTTACTGAATGCTGCACCTAAACGACTTTGGGTACCTACTTACATTGACATGGAAATGCTCTGCAGTGACAACCCTAAATCAGAATCTTCCCAGCAATTTTGACCATCATATTCTTGGAATTTAAAATAAAACCTTCTGCTTGTGGGGGAAAAAAAATAAAAATGTAAATCAAAACGAACAAAAAATAAAAAATAAAAAAGTAAGACCGAATTGTTACGACCAGAATTCAAAATAACAAAAAGGGAGGGTGAACCTGGGAAGGGAACATTAAAAAACGATTTTTTTAAAAAAGCCATCATGCTTTTGCATAGCAAAGTATAATTTCTTGATTATAATGCCAAGCTAGGAGAGGCCCACAGACCGCGGGGAATCTCCTGCCTTTTAAAAGCCTAACAAAATTGCACATTCAAACACAGATACCATCCATCAAGCAAAAGGCTCCTGGGCAGAAAAGTAGGCGCCGGTTTGCTGTTCTCTCCAGTGATCCCGGAGATCAAGGCGATAGACTGCCCTGGGAAGCCAAGGAGGCACTGAGGAGTGTCCACTGGTAGCCTATGGGGCTGGAAGCTAACCTGGGAAGTCAAGGAGGCACTGAGGAGTGTCCACTGGTAGCCTATGGGGCTGGAAGCTAACCCCCCTCCCTTCTGCAGTTTGTCCCCCTACCTGTGTGGGTTCGCAGGTGTGCCTTGAGATGGGAACTCTTTGTGTAGGTTTTGCCG	GAAGGGGTGTATTGAATTCCATATCATAAACAGAAATACATTCCGTGCTTAAGTATTTGGTCTTGTTTTTAGGGGGTCAGTTAAGCACACAACCACCACCTACACCTATACTAATGTTTCACCAAAAACACACAAACACCACCTAAACCTATACTAATGTTTCATTTGAGTCAAGGCATCTCAGTGGTGGAAATGAAATTTGGAAATTGTGATTGGTAGTGTGCCCAAACCATGCAATCTTATTCCTACTACGACTGGGGATAAAAAGCCACAGGTGGCTACTTTTTTTTTCTTTACCTTTACGTTACTGAATGCTGCACCTAAACGACTTTGGGTACCTACTTACATTGACATGGAAATGCTCTGCAGTGACAACCCTAAATCAGAATCTTCCCAGCAATTTTGACCATCATATTCTTGGAATTTAAAATAAAACCTTCTGCTTGTGGGGGAAAAAAAATAAAAATGTAAATCAAAACGAACAAAAAATAAAAAATAAAAAAGTAAGACCGAATTGTTACGACCAGAATTCAAAATAACAAAAAGGGAGGGTGAACCTGGGAAGGGAACATTAAAAAACGATTTTTTTAAAAAAGCCATCATGCTTTTGCATAGCAAAGTATAATTTCTTGATTATAATGCCAAGCTAGGAGAGGCCCACAGACCGCGGGGAATCTCCTGCCTTTTAAAAGCCTAACAAAATTGCACATTCAAACACAGATACCATCCATCAAGCAAAAGGCTCCTGGGCAGAAAAGTAGGCGCCGGTTTGCTGTTCTCTCCAGTGATCCCGGAGATCAAGGCGATAGACTGCCCTGGGAAGCCAAGGAGGCACTGAGGAGTGTCCACTGGTAGCCTATGGGGCTGGAAGCTAACCTGGGAAGTCAAGGAGGCACTGAGGAGTGTCCACTGGTAGCCTATGGGGCTGGAAGCTAACCCCCCTCCCTTCTGCAGTTTGTCCCCCTACCTGTGTGGGTTCGCAGGTGTGCCTTGAGATGGGAACTCTTTGTGTAGGTTTTGCCG	-			P-0079299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	394	82	0	ENST00000374672.4:c.1209_1265-135del		p.X403_splice	ENST00000374672	NM_004235.4	403																																																																																
BRCA2	675	MSKCC	GRCh37	13	32914447	32914448	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0079299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			35	65	378	0	ENST00000380152.3:c.5955_5956insAA	p.Val1986LysfsTer19	p.V1986Kfs*19	ENST00000380152		1985	-/AA																																																																															
ATM	472	MSKCC	GRCh37	11	108123623	108123623	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079315-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			209	17	310	0	ENST00000278616.4:c.1882C>T	p.Gln628Ter	p.Q628*	ENST00000278616	NM_000051.3	628	Caa/Taa																																																																															
SMO	6608	MSKCC	GRCh37	7	128845134	128845134	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079315-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			514	58	515	1	ENST00000249373.3:c.628G>T	p.Val210Leu	p.V210L	ENST00000249373	NM_005631.4	210	Gtg/Ttg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937918	36937918	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs370712007		P-0079315-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			671	53	633	0	ENST00000361632.4:c.918G>C	p.Gln306His	p.Q306H	ENST00000361632		306	caG/caC																																																																															
ERG	2078	MSKCC	GRCh37	21	39772519	39772519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079315-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			524	51	420	0	ENST00000288319.7:c.722C>T	p.Thr241Met	p.T241M	ENST00000288319	NM_182918.3	241	aCg/aTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624296	89624296	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs786201995		P-0079315-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			298	53	280	0	ENST00000371953.3:c.70G>T	p.Asp24Tyr	p.D24Y	ENST00000371953	NM_000314.4	24	Gac/Tac																																																																															
SDHA	6389	MSKCC	GRCh37	5	225600	225600	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777600956		P-0079315-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	57	285	0	ENST00000264932.6:c.379G>A	p.Val127Met	p.V127M	ENST00000264932	NM_004168.2	127	Gtg/Atg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94201025	94201025	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587780133		P-0079315-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			311	22	339	0	ENST00000323929.3:c.1052G>A	p.Arg351His	p.R351H	ENST00000323929	NM_005591.3	351	cGt/cAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29533271	29533271	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079315-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			378	76	446	0	ENST00000358273.4:c.1274G>T	p.Trp425Leu	p.W425L	ENST00000358273	NM_001042492.2	425	tGg/tTg																																																																															
AR	367	MSKCC	GRCh37	X	66765174	66765174	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079315-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			301	71	224	0	ENST00000374690.3:c.186G>C	p.Gln62His	p.Q62H	ENST00000374690	NM_000044.3	62	caG/caC																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031974	10031974	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079315-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			424	89	420	0	ENST00000330684.3:c.849C>A	p.Asp283Glu	p.D283E	ENST00000330684	NM_001134407.1	283	gaC/gaA																																																																															
MPL	4352	MSKCC	GRCh37	1	43804953	43804953	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079315-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			489	50	428	0	ENST00000372470.3:c.403C>A	p.Pro135Thr	p.P135T	ENST00000372470	NM_005373.2	135	Ccc/Acc																																																																															
ATRX	546	MSKCC	GRCh37	X	76778774	76778774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079315-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			242	37	418	0	ENST00000373344.5:c.6805G>A	p.Glu2269Lys	p.E2269K	ENST00000373344	NM_000489.3	2269	Gaa/Aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509798	187509798	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0079315-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			454	151	430	0	ENST00000441802.2:c.13715T>G	p.Phe4572Cys	p.F4572C	ENST00000441802	NM_005245.3	4572	tTc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577508	7577512	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAG	TCCAG	-			P-0079315-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			395	91	382	0	ENST00000269305.4:c.769_773del	p.Leu257ArgfsTer5	p.L257Rfs*5	ENST00000269305	NM_001126112.2	257	CTGGAa/a																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390204	89390204	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079315-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			369	92	400	0	ENST00000336596.2:c.953C>G	p.Pro318Arg	p.P318R	ENST00000336596	NM_005233.5	318	cCa/cGa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094364	27094364	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079315-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			576	48	466	0	ENST00000324856.7:c.3073del	p.Asp1025ThrfsTer14	p.D1025Tfs*14	ENST00000324856	NM_006015.4	1024	gtG/gt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509964	187509964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079315-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			418	138	444	0	ENST00000441802.2:c.13549G>A	p.Ala4517Thr	p.A4517T	ENST00000441802	NM_005245.3	4517	Gcc/Acc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17937587	17937588	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0079315-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			466	91	412	1	ENST00000458235.1:c.3339_3340delinsAA	p.His1113_Pro1114delinsGlnThr	p.H1113_P1114delinsQT	ENST00000458235	NM_000215.3	1113	caCCca/caAAca																																																																															
ATRX	546	MSKCC	GRCh37	X	76972653	76972653	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0079315-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			378	61	315	0	ENST00000373344.5:c.88G>T	p.Glu30Ter	p.E30*	ENST00000373344	NM_000489.3	30	Gaa/Taa																																																																															
AR	367	MSKCC	GRCh37	X	66766252	66766252	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079315-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			587	92	497	0	ENST00000374690.3:c.1264C>G	p.Pro422Ala	p.P422A	ENST00000374690	NM_000044.3	422	Ccc/Gcc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302451	15302452	+	missense_variant	Missense_Mutation	DNP	CC	CC	GT			P-0079315-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			577	106	571	0	ENST00000263388.2:c.819_820delinsAC	p.Asp274His	p.D274H	ENST00000263388	NM_000435.2	273	gaGGac/gaACac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0079333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	42	598	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	10	437	0	ENST00000342988.3:c.988G>C	p.Glu330Gln	p.E330Q	ENST00000342988	NM_005359.5	330	Gaa/Caa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0079333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	25	298	2	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175546	112175547	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0079333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	30	472	0	ENST00000257430.4:c.4256dup	p.Ser1419ArgfsTer4	p.S1419Rfs*4	ENST00000257430	NM_000038.5	1419	agc/aGgc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0079337-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	78	391	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873019	134873019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079337-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	31	358	0	ENST00000398015.3:c.1323C>A	p.His441Gln	p.H441Q	ENST00000398015	NM_004441.4	441	caC/caA																																																																															
EP300	2033	MSKCC	GRCh37	22	41574269	41574269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1413325383		P-0079337-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	38	461	0	ENST00000263253.7:c.6554G>A	p.Arg2185Gln	p.R2185Q	ENST00000263253	NM_001429.3	2185	cGa/cAa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637318	176637318	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079337-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	40	445	0	ENST00000439151.2:c.1918A>T	p.Thr640Ser	p.T640S	ENST00000439151	NM_022455.4	640	Acc/Tcc																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2094698	2094698	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079337-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	27	397	0	ENST00000219066.1:c.482T>C	p.Val161Ala	p.V161A	ENST00000219066	NM_002528.5	161	gTg/gCg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241677	55241677	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs727504256		P-0079341-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	164	417	0	ENST00000275493.2:c.2125G>A	p.Glu709Lys	p.E709K	ENST00000275493	NM_005228.3	709	Gaa/Aaa																																																																															
MGA	23269	MSKCC	GRCh37	15	42041089	42041089	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079341-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	174	473	0	ENST00000219905.7:c.5467C>T	p.Gln1823Ter	p.Q1823*	ENST00000219905	NM_001164273.1	1823	Cag/Tag																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7989402	7989402	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150641093		P-0079341-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	73	443	0	ENST00000319144.4:c.284G>A	p.Arg95His	p.R95H	ENST00000319144	NM_001139.2	95	cGt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538212	187538212	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079341-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	81	352	0	ENST00000441802.2:c.9022A>G	p.Ile3008Val	p.I3008V	ENST00000441802	NM_005245.3	3008	Ata/Gta																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139744	55139744	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079341-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	164	346	0	ENST00000257290.5:c.1405G>T	p.Val469Phe	p.V469F	ENST00000257290	NM_006206.4	469	Gtc/Ttc																																																																															
MGA	23269	MSKCC	GRCh37	15	42041116	42041116	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079341-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	165	430	0	ENST00000219905.7:c.5494C>G	p.Arg1832Gly	p.R1832G	ENST00000219905	NM_001164273.1	1832	Cgg/Ggg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259517	+	missense_variant	Missense_Mutation	ONP	TGG	TGG	GTT			P-0079341-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	129	373	0	ENST00000275493.2:c.2573_2575delinsGTT	p.Leu858_Ala859delinsArgSer	p.L858_A859delinsRS	ENST00000275493	NM_005228.3	858	cTGGcc/cGTTcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs786203436		P-0079357-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	252	687	0	ENST00000269305.4:c.487T>A	p.Tyr163Asn	p.Y163N	ENST00000269305	NM_001126112.2	163	Tac/Aac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075218	16075218	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0079357-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	208	469	0	ENST00000268712.3:c.334G>T	p.Glu112Ter	p.E112*	ENST00000268712	NM_006311.3	112	Gaa/Taa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060747	38060748	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	A			P-0079357-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	117	650	0	ENST00000250448.2:c.1241_1242delinsT	p.Lys414IlefsTer26	p.K414Ifs*26	ENST00000250448	NM_004496.3	414	aAG/aT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs863224683		P-0079361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	52	399	0	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838023	156838023	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	32	523	0	ENST00000524377.1:c.556A>G	p.Met186Val	p.M186V	ENST00000524377	NM_002529.3	186	Atg/Gtg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859396	57859396	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0079361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	17	337	0	ENST00000228682.2:c.541T>A	p.Ser181Thr	p.S181T	ENST00000228682	NM_005269.2	181	Tct/Act																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437626	110437626	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	24	469	0	ENST00000375856.3:c.775G>T	p.Val259Leu	p.V259L	ENST00000375856	NM_003749.2	259	Gtg/Ttg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123353304	123353304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	27	466	0	ENST00000358487.5:c.28C>A	p.Leu10Met	p.L10M	ENST00000358487	NM_000141.4	10	Ctg/Atg																																																																															
NF1	4763	MSKCC	GRCh37	17	29654765	29654765	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	39	455	0	ENST00000358273.4:c.5521del	p.Gln1841AsnfsTer22	p.Q1841Nfs*22	ENST00000358273	NM_001042492.2	1839	atC/at																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913315		P-0079394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	58	530	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600407	10600407	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs867398451		P-0079394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	21	610	0	ENST00000171111.5:c.1448G>T	p.Arg483Leu	p.R483L	ENST00000171111	NM_203500.1	483	cGc/cTc																																																																															
BTK	695	MSKCC	GRCh37	X	100630152	100630152	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	11	382	0	ENST00000308731.7:c.121G>C	p.Glu41Gln	p.E41Q	ENST00000308731	NM_000061.2	41	Gag/Cag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600505	10600505	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	64	532	0	ENST00000171111.5:c.1350G>T	p.Trp450Cys	p.W450C	ENST00000171111	NM_203500.1	450	tgG/tgT																																																																															
IL10	3586	MSKCC	GRCh37	1	206945776	206945776	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0079394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	25	478	0	ENST00000423557.1:c.5A>T	p.His2Leu	p.H2L	ENST00000423557	NM_000572.2	2	cAc/cTc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41258516	41258516	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	21	349	0	ENST00000357654.3:c.169G>C	p.Gly57Arg	p.G57R	ENST00000357654	NM_007294.3	57	Ggg/Cgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628736	187628736	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0079394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	26	575	0	ENST00000441802.2:c.2246A>T	p.Asn749Ile	p.N749I	ENST00000441802	NM_005245.3	749	aAt/aTt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913230	39913230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	20	571	0	ENST00000378444.4:c.4885G>A	p.Asp1629Asn	p.D1629N	ENST00000378444	NM_001123385.1	1629	Gat/Aat																																																																															
GAB2	9846	MSKCC	GRCh37	11	77930344	77930344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	31	508	0	ENST00000361507.4:c.2005G>C	p.Glu669Gln	p.E669Q	ENST00000361507	NM_080491.2	669	Gag/Cag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484231	8484231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	19	446	1	ENST00000356435.5:c.3301G>A	p.Ala1101Thr	p.A1101T	ENST00000356435		1101	Gca/Aca																																																																															
RASA1	5921	MSKCC	GRCh37	5	86627286	86627286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	15	391	0	ENST00000274376.6:c.661C>G	p.Leu221Val	p.L221V	ENST00000274376	NM_002890.2	221	Ctt/Gtt																																																																															
KDR	3791	MSKCC	GRCh37	4	55961027	55961027	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	15	365	0	ENST00000263923.4:c.2913C>A	p.Ser971Arg	p.S971R	ENST00000263923	NM_002253.2	971	agC/agA																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870838	12870838	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	GT			P-0075994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	73	384	0	ENST00000228872.4:c.65delinsGT	p.Glu22GlyfsTer103	p.E22Gfs*103	ENST00000228872	NM_004064.3	22	gAg/gGTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0076756-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	102	466	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																															
AR	367	MSKCC	GRCh37	X	66905930	66905930	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754201976		P-0076756-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			385	81	418	0	ENST00000374690.3:c.1847G>A	p.Arg616His	p.R616H	ENST00000374690	NM_000044.3	616	cGt/cAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453136	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-	rs397516897		P-0076756-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			317	70	392	0	ENST00000288602.6:c.1799_1801del	p.Val600_Lys601delinsGlu	p.V600_K601delinsE	ENST00000288602	NM_004333.4	600	gTGAaa/gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0076756-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			304	87	350	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604721	48604748	+	frameshift_variant	Frame_Shift_Del	DEL	AGACAGAGCATCAAAGAAACACCTTGCT	AGACAGAGCATCAAAGAAACACCTTGCT	-			P-0076756-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			348	77	461	0	ENST00000342988.3:c.1543_1570del	p.Arg515GlyfsTer13	p.R515Gfs*13	ENST00000342988	NM_005359.5	515	AGACAGAGCATCAAAGAAACACCTTGCTgg/gg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89845365	89845365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076756-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			515	61	507	0	ENST00000389301.3:c.1762C>T	p.Leu588Phe	p.L588F	ENST00000389301	NM_000135.2	588	Ctc/Ttc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602508	10602509	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0076756-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			467	77	493	0	ENST00000171111.5:c.1069_1070insC	p.Asp357AlafsTer58	p.D357Afs*58	ENST00000171111	NM_203500.1	357	gac/gCac																																																																															
FLT1	2321	MSKCC	GRCh37	13	28895722	28895722	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0076756-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			451	64	415	0	ENST00000282397.4:c.3052T>A	p.Cys1018Ser	p.C1018S	ENST00000282397	NM_002019.4	1018	Tgc/Agc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0079110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	628	384	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T	rs886039483		P-0079110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	582	365	0	ENST00000269305.4:c.376T>A	p.Tyr126Asn	p.Y126N	ENST00000269305	NM_001126112.2	126	Tac/Aac																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913233		P-0079110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	351	427	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37646846	37646847	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0079110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	771	348	0	ENST00000447079.4:c.1971_1972del	p.Lys658GlyfsTer41	p.K658Gfs*41	ENST00000447079	NM_015083.1	656	aaAGag/aaag																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26055925	26056065	+	coding_sequence_variant,3_prime_UTR_variant	In_Frame_Del	DEL	GGCAGATAGTAAAGAAATTATCCAGCTCTTTTATTGAGATCAGTGGTGGCTCTGAAAAGAGCCTTTTGGGTTTTAGAAGTAGGCGTTCGCCTATTTCTTCTTGGGCGCCGCCTTCTTAGGCTTGACAACCTTGGGCTTAGC	GGCAGATAGTAAAGAAATTATCCAGCTCTTTTATTGAGATCAGTGGTGGCTCTGAAAAGAGCCTTTTGGGTTTTAGAAGTAGGCGTTCGCCTATTTCTTCTTGGGCGCCGCCTTCTTAGGCTTGACAACCTTGGGCTTAGC	-			P-0079110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	54	121	0				ENST00000343677	NM_005319.3	198		1-Jan																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158531	26158531	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			850	59	398	0	ENST00000289316.2:c.134T>C	p.Val45Ala	p.V45A	ENST00000289316	NM_138720.2	45	gTg/gCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0079296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	426	468	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118859	70118859	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0079296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	121	493	0	ENST00000245479.2:c.432-1G>C		p.X144_splice	ENST00000245479	NM_000346.3	144																																																																																
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0079297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	60	367	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604697	48604697	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	45	414	0	ENST00000342988.3:c.1519A>G	p.Lys507Glu	p.K507E	ENST00000342988	NM_005359.5	507	Aaa/Gaa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913558	32913559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1265028174		P-0079297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	39	384	1	ENST00000380152.3:c.5073dup	p.Trp1692MetfsTer3	p.W1692Mfs*3	ENST00000380152		1689	gca/gcAa																																																																															
APC	324	MSKCC	GRCh37	5	112174675	112174676	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0079297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	47	427	0	ENST00000257430.4:c.3385_3386del	p.Leu1129ValfsTer5	p.L1129Vfs*5	ENST00000257430	NM_000038.5	1128	tcTTtg/tctg																																																																															
REST	5978	MSKCC	GRCh37	4	57797807	57797807	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747423176		P-0079297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	29	399	0	ENST00000309042.7:c.2783C>T	p.Thr928Met	p.T928M	ENST00000309042	NM_005612.4	928	aCg/aTg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664766	138664766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	16	316	0	ENST00000330315.3:c.799C>T	p.Pro267Ser	p.P267S	ENST00000330315	NM_023067.3	267	Ccc/Tcc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711241	114711241	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0079298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	178	240	0	ENST00000543371.1:c.257-1G>C		p.X86_splice	ENST00000543371	NM_001198531.1	86																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0079298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	430	451	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	187	355	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
TERT	7015	MSKCC	GRCh37	5	1296051	1296051	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0079298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	51	414	1				ENST00000310581	NM_198253.2																																																																																	
MSH3	4437	MSKCC	GRCh37	5	80150136	80150136	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0076666-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			315	41	338	0	ENST00000265081.6:c.3000+1del		p.X1000_splice	ENST00000265081	NM_002439.4	1000																																																																																
SETD2	29072	MSKCC	GRCh37	3	47103738	47103738	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076666-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			531	76	457	0	ENST00000409792.3:c.6208C>T	p.Gln2070Ter	p.Q2070*	ENST00000409792	NM_014159.6	2070	Caa/Taa																																																																															
CARM1	10498	MSKCC	GRCh37	19	11024682	11024682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	166	397	0	ENST00000327064.4:c.799C>T	p.Arg267Cys	p.R267C	ENST00000327064	NM_199141.1	267	Cgc/Tgc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971035	21971035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	365	456	3	ENST00000304494.5:c.323A>G	p.Asp108Gly	p.D108G	ENST00000304494	NM_000077.4	108	gAt/gGt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120497691	120497691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	42	506	0	ENST00000256646.2:c.2191C>T	p.His731Tyr	p.H731Y	ENST00000256646	NM_024408.3	731	Cat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0078463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	471	331	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118353170	118353170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	159	353	0	ENST00000534358.1:c.4046C>T	p.Pro1349Leu	p.P1349L	ENST00000534358	NM_005933.3	1349	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577095	7577096	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0078463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	375	486	0	ENST00000269305.4:c.842dup	p.Asp281GlufsTer25	p.D281Efs*25	ENST00000269305	NM_001126112.2	281	gac/gaAc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	47	397	0	ENST00000347630.2:c.397T>C	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	Ttc/Ctc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909231		P-0078673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	14	157	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga																																																																															
POLE	5426	MSKCC	GRCh37	12	133212572	133212572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	42	387	0	ENST00000320574.5:c.5717C>T	p.Ser1906Phe	p.S1906F	ENST00000320574	NM_006231.2	1906	tCt/tTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720865	89720866	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	19	177	0	ENST00000371953.3:c.1019dup	p.Asn340LysfsTer3	p.N340Kfs*3	ENST00000371953	NM_000314.4	339	cca/ccAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874487	151874487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	51	460	0	ENST00000262189.6:c.8051G>T	p.Gly2684Val	p.G2684V	ENST00000262189	NM_170606.2	2684	gGt/gTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874885	151874885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	51	440	0	ENST00000262189.6:c.7653C>A	p.His2551Gln	p.H2551Q	ENST00000262189	NM_170606.2	2551	caC/caA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860446	151860446	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057518278		P-0078673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	63	515	0	ENST00000262189.6:c.10216G>A	p.Glu3406Lys	p.E3406K	ENST00000262189	NM_170606.2	3406	Gaa/Aaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874365	151874365	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	45	393	0	ENST00000262189.6:c.8173G>T	p.Glu2725Ter	p.E2725*	ENST00000262189	NM_170606.2	2725	Gag/Tag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956698	93956698	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	38	324	0	ENST00000369303.4:c.2538A>G	p.Ile846Met	p.I846M	ENST00000369303	NM_004440.3	846	atA/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	202	463	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	158	348	0	ENST00000397062.3:c.101G>C	p.Arg34Pro	p.R34P	ENST00000397062	NM_006164.4	34	cGa/cCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs985033810		P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	153	367	0	ENST00000269305.4:c.731G>T	p.Gly244Val	p.G244V	ENST00000269305	NM_001126112.2	244	gGc/gTc																																																																															
ATM	472	MSKCC	GRCh37	11	108121692	108121692	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	163	446	0	ENST00000278616.4:c.1500A>G	p.Ile500Met	p.I500M	ENST00000278616	NM_000051.3	500	atA/atG																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367244	50367244	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	139	307	0	ENST00000331340.3:c.56del	p.Pro19LeufsTer2	p.P19Lfs*2	ENST00000331340	NM_006060.4	17	agC/ag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162722915	162722915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	250	360	0	ENST00000367921.3:c.113G>T	p.Gly38Val	p.G38V	ENST00000367921	NM_006182.2	38	gGa/gTa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	285	343	0	ENST00000304494.5:c.151-2A>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134967195	134967195	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	273	348	0	ENST00000398015.3:c.2534C>A	p.Pro845Gln	p.P845Q	ENST00000398015	NM_004441.4	845	cCa/cAa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624865	9624865	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	140	314	0	ENST00000353224.5:c.112C>T	p.Gln38Ter	p.Q38*	ENST00000353224	NM_177990.2	38	Cag/Tag																																																																															
EP300	2033	MSKCC	GRCh37	22	41564593	41564593	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	96	384	0	ENST00000263253.7:c.4015A>G	p.Met1339Val	p.M1339V	ENST00000263253	NM_001429.3	1339	Atg/Gtg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455135	50455135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	124	310	0	ENST00000331340.3:c.682G>A	p.Glu228Lys	p.E228K	ENST00000331340	NM_006060.4	228	Gaa/Aaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151864310	151864310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	130	313	0	ENST00000262189.6:c.9671G>T	p.Arg3224Leu	p.R3224L	ENST00000262189	NM_170606.2	3224	cGt/cTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151871328	151871328	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	162	224	0	ENST00000262189.6:c.9263-1G>T		p.X3088_splice	ENST00000262189	NM_170606.2	3088																																																																																
YES1	7525	MSKCC	GRCh37	18	732902	732902	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	130	338	1	ENST00000314574.4:c.1355A>G	p.Lys452Arg	p.K452R	ENST00000314574	NM_005433.3	452	aAg/aGg																																																																															
AXL	558	MSKCC	GRCh37	19	41726570	41726570	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	153	352	0	ENST00000301178.4:c.115G>T	p.Gly39Cys	p.G39C	ENST00000301178	NM_021913.4	39	Ggc/Tgc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851783	63851783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	100	481	0	ENST00000279873.7:c.2561C>T	p.Ser854Phe	p.S854F	ENST00000279873	NM_032199.2	854	tCc/tTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421645	49421646	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	159	391	0	ENST00000301067.7:c.14583dup	p.Ala4862CysfsTer51	p.A4862Cfs*51	ENST00000301067	NM_003482.3	4861	-/T																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444834	49444834	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750945416		P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	209	516	0	ENST00000301067.7:c.2632G>A	p.Glu878Lys	p.E878K	ENST00000301067	NM_003482.3	878	Gag/Aag																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127920619	127920619	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	133	259	0	ENST00000373547.4:c.280A>G	p.Thr94Ala	p.T94A	ENST00000373547	NM_002721.4	94	Act/Gct																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508067	106508067	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	179	308	0	ENST00000359195.3:c.61C>G	p.Arg21Gly	p.R21G	ENST00000359195	NM_002649.2	21	Cgg/Ggg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625252	69625252	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	78	432	0	ENST00000334134.2:c.541C>G	p.Arg181Gly	p.R181G	ENST00000334134	NM_005247.2	181	Cgc/Ggc																																																																															
RET	5979	MSKCC	GRCh37	10	43600486	43600486	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	177	434	0	ENST00000355710.3:c.712G>T	p.Glu238Ter	p.E238*	ENST00000355710	NM_020975.4	238	Gag/Tag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68984777	68984777	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	49	295	0	ENST00000288368.4:c.1541A>G	p.Asn514Ser	p.N514S	ENST00000288368	NM_024870.2	514	aAc/aGc																																																																															
AR	367	MSKCC	GRCh37	X	66941706	66941706	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			66	198	165	0	ENST00000374690.3:c.2350C>T	p.Gln784Ter	p.Q784*	ENST00000374690	NM_000044.3	784	Cag/Tag																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748317	41748317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	75	330	0	ENST00000226382.2:c.452C>A	p.Ala151Asp	p.A151D	ENST00000226382	NM_003924.3	151	gCc/gAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302962	15302962	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	282	441	0	ENST00000263388.2:c.488G>C	p.Arg163Pro	p.R163P	ENST00000263388	NM_000435.2	163	cGg/cCg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0079208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	44	308	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436624	52436624	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs387906848		P-0079208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	56	455	0	ENST00000460680.1:c.2050C>T	p.Gln684Ter	p.Q684*	ENST00000460680	NM_004656.3	684	Cag/Tag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217888	2217888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	62	431	0	ENST00000398665.3:c.2662G>A	p.Val888Met	p.V888M	ENST00000398665	NM_032482.2	888	Gtg/Atg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436680	110436680	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	72	447	0	ENST00000375856.3:c.1721G>C	p.Arg574Thr	p.R574T	ENST00000375856	NM_003749.2	574	aGg/aCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0079212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	47	339	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0079212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			49	23	234	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177424	56177428	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTG	CTTTG	-			P-0079212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	38	416	0	ENST00000399503.3:c.2403_2407del	p.Leu802ValfsTer3	p.L802Vfs*3	ENST00000399503	NM_005921.1	799	acCTTTGct/acct																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160643	56160644	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCGTGTTAAAA			P-0079212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	134	454	0	ENST00000399503.3:c.926_927insAACCGTGTTAA	p.Asn309LysfsTer7	p.N309Kfs*7	ENST00000399503	NM_005921.1	306	cgc/cgCCGTGTTAAAAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874736	151874736	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	116	509	0	ENST00000262189.6:c.7802del	p.Gly2601AlafsTer46	p.G2601Afs*46	ENST00000262189	NM_170606.2	2601	gGc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0079216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	115	278	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0079216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	35	188	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0079216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	41	310	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
CDH1	999	MSKCC	GRCh37	16	68845757	68845757	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587780784		P-0079219-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	29	361	0	ENST00000261769.5:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000261769	NM_004360.3	335	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023539	27023539	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0079219-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	24	392	0	ENST00000324856.7:c.645C>A	p.Tyr215Ter	p.Y215*	ENST00000324856	NM_006015.4	215	taC/taA																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576154	88576154	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs548610351		P-0079219-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	34	462	0	ENST00000360948.2:c.1519C>T	p.Arg507Cys	p.R507C	ENST00000360948	NM_001012338.2	507	Cgc/Tgc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47108572	47108581	+	frameshift_variant	Frame_Shift_Del	DEL	TTTCAGTTTG	TTTCAGTTTG	-			P-0079219-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	14	301	0	ENST00000409792.3:c.6088_6097del	p.Gln2030ArgfsTer114	p.Q2030Rfs*114	ENST00000409792	NM_014159.6	2030	CAAACTGAAAag/ag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0079268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	2496	370	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057520000		P-0079268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	132	448	0	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436149	56436149	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	107	411	0	ENST00000407977.2:c.988C>T	p.Arg330Ter	p.R330*	ENST00000407977		330	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40710554	40710554	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746059787		P-0079268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	115	358	0	ENST00000373198.4:c.4297C>T	p.Arg1433Cys	p.R1433C	ENST00000373198	NM_133170.3	1433	Cgt/Tgt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368233	45368233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			17	383	354	0	ENST00000262160.6:c.1369G>A	p.Gly457Arg	p.G457R	ENST00000262160	NM_005901.5	457	Gga/Aga																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099253	4099255	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs763469132		P-0079269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	94	461	0	ENST00000262948.5:c.863_865del	p.Glu288del	p.E288del	ENST00000262948	NM_030662.3	288	gAAGga/gga																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738518	145738518	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368611522		P-0079269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	105	427	1	ENST00000428558.2:c.2467G>A	p.Glu823Lys	p.E823K	ENST00000428558	NM_004260.3	823	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0079269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	459	512	0	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
SUZ12	23512	MSKCC	GRCh37	17	30264407	30264407	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	127	458	0	ENST00000322652.5:c.142G>T	p.Gly48Trp	p.G48W	ENST00000322652	NM_015355.2	48	Ggg/Tgg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55124963	55124963	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	90	321	0	ENST00000257290.5:c.28G>T	p.Val10Phe	p.V10F	ENST00000257290	NM_006206.4	10	Gtc/Ttc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520112	9520112	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	101	348	0	ENST00000353224.5:c.2157C>A	p.His719Gln	p.H719Q	ENST00000353224	NM_177990.2	719	caC/caA																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9776562	9776562	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	203	390	0	ENST00000377346.4:c.665G>T	p.Arg222Leu	p.R222L	ENST00000377346	NM_005026.3	222	cGg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210751	36210751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	315	482	0	ENST00000222270.7:c.502G>T	p.Asp168Tyr	p.D168Y	ENST00000222270	NM_014727.1	168	Gat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112155018	112155018	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	18	366	0	ENST00000257430.4:c.1289G>T	p.Gly430Val	p.G430V	ENST00000257430	NM_000038.5	430	gGc/gTc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134825379	134825379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	11	430	0	ENST00000398015.3:c.895C>T	p.Pro299Ser	p.P299S	ENST00000398015	NM_004441.4	299	Ccc/Tcc																																																																															
SDHD	6392	MSKCC	GRCh37	11	111957644	111957644	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0079269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	114	341	0	ENST00000375549.3:c.13T>A	p.Trp5Arg	p.W5R	ENST00000375549	NM_003002.3	5	Tgg/Agg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98242354	98242354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	242	388	0	ENST00000331920.6:c.964G>A	p.Val322Ile	p.V322I	ENST00000331920	NM_000264.3	322	Gtt/Att																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22161987	22161987	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0079269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			30	413	394	0	ENST00000215832.6:c.268A>T	p.Ile90Phe	p.I90F	ENST00000215832	NM_002745.4	90	Att/Ttt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533700	63533700	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	112	580	0	ENST00000307078.5:c.1454G>T	p.Gly485Val	p.G485V	ENST00000307078	NM_004655.3	485	gGc/gTc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61706033	61706097	+	frameshift_variant	Frame_Shift_Del	DEL	ATCAGCCTGCCGTAGGGCTATTTCTCTCTCTTCCAAAAACAAATCAGAAGTGTCTTCACCTGCAA	ATCAGCCTGCCGTAGGGCTATTTCTCTCTCTTCCAAAAACAAATCAGAAGTGTCTTCACCTGCAA	-			P-0079269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	108	372	0	ENST00000401558.2:c.3074_3138del	p.Phe1025Ter	p.F1025*	ENST00000401558	NM_003400.3	1025	tTTGCAGGTGAAGACACTTCTGATTTGTTTTTGGAAGAGAGAGAAATAGCCCTACGGCAGGCTGAT/t																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945746	38945746	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0079269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	410	339	0	ENST00000357387.3:c.4480A>C	p.Asn1494His	p.N1494H	ENST00000357387	NM_152756.3	1494	Aat/Cat																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11107192	11107192	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0079269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	163	381	0	ENST00000344626.4:c.1784A>C	p.Gln595Pro	p.Q595P	ENST00000344626	NM_003072.3	595	cAg/cCg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056337	26056337	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	206	455	0	ENST00000343677.2:c.320T>C	p.Leu107Pro	p.L107P	ENST00000343677	NM_005319.3	107	cTc/cCc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538282	9538282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	89	372	0	ENST00000353224.5:c.1716C>A	p.Asp572Glu	p.D572E	ENST00000353224	NM_177990.2	572	gaC/gaA																																																																															
KIT	3815	MSKCC	GRCh37	4	55593612	55593612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	158	384	0	ENST00000288135.5:c.1678G>T	p.Val560Phe	p.V560F	ENST00000288135	NM_000222.2	560	Gtt/Ttt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41514547	41514547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			72	48	344	0	ENST00000373198.4:c.114del	p.Tyr38Ter	p.Y38*	ENST00000373198	NM_133170.3	38	taC/ta																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs869025608		P-0079279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	42	319	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	70	353	0	ENST00000269305.4:c.797del	p.Gly266AspfsTer79	p.G266Dfs*79	ENST00000269305	NM_001126112.2	266	gGa/ga																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441430	52441430	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	107	534	0	ENST00000460680.1:c.422A>G	p.His141Arg	p.H141R	ENST00000460680	NM_004656.3	141	cAt/cGt																																																																															
KDR	3791	MSKCC	GRCh37	4	55981080	55981080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	38	276	0	ENST00000263923.4:c.619G>A	p.Glu207Lys	p.E207K	ENST00000263923	NM_002253.2	207	Gaa/Aaa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748128	43748128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	46	347	0	ENST00000382044.4:c.2678C>T	p.Ser893Phe	p.S893F	ENST00000382044	NM_001141980.1	893	tCt/tTt																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945083	31945083	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	121	339	1	ENST00000340398.3:c.18G>T	p.Gln6His	p.Q6H	ENST00000340398	NM_001013699.2	6	caG/caT																																																																															
MTOR	2475	MSKCC	GRCh37	1	11288729	11288729	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	71	331	0	ENST00000361445.4:c.3026G>T	p.Arg1009Leu	p.R1009L	ENST00000361445	NM_004958.3	1009	cGg/cTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104750	69104750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	101	358	0	ENST00000288368.4:c.4594G>T	p.Gly1532Cys	p.G1532C	ENST00000288368	NM_024870.2	1532	Ggt/Tgt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894941	101894941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	37	348	0	ENST00000374994.4:c.494C>T	p.Ser165Leu	p.S165L	ENST00000374994	NM_004612.2	165	tCa/tTa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123325162	123325162	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0079279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	75	366	0	ENST00000358487.5:c.166G>T	p.Glu56Ter	p.E56*	ENST00000358487	NM_000141.4	56	Gag/Tag																																																																															
BLM	641	MSKCC	GRCh37	15	91304464	91304464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	26	308	0	ENST00000355112.3:c.1861G>A	p.Glu621Lys	p.E621K	ENST00000355112	NM_000057.2	621	Gag/Aag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71050178	71050178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	65	293	0	ENST00000318789.4:c.1007G>A	p.Arg336Lys	p.R336K	ENST00000318789	NM_032682.5	336	aGa/aAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782144		P-0004873-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	77	525	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612340	1612340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004873-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			374	38	443	0	ENST00000344749.5:c.1679G>T	p.Arg560Leu	p.R560L	ENST00000344749	NM_001136139.2	560	cGg/cTg																																																																															
ALK	238	MSKCC	GRCh37	2	29455230	29455230	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004873-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			374	51	487	0	ENST00000389048.3:c.2572C>A	p.Pro858Thr	p.P858T	ENST00000389048	NM_004304.4	858	Cca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004873-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	71	266	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133226279	133226279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004873-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			328	38	394	0	ENST00000320574.5:c.3779C>A	p.Ala1260Asp	p.A1260D	ENST00000320574	NM_006231.2	1260	gCc/gAc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40460292	40460292	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004873-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			428	36	406	0	ENST00000345506.4:c.2003A>G	p.Tyr668Cys	p.Y668C	ENST00000345506	NM_003152.3	668	tAt/tGt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032552	47032555	+	frameshift_variant	Frame_Shift_Del	DEL	GCGT	GCGT	-			P-0004873-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	54	407	0	ENST00000329236.7:c.229_232del	p.Val77LysfsTer7	p.V77Kfs*7	ENST00000329236	NM_001204466.1	76	gGCGTg/gg																																																																															
TRIP13	9319	MSKCC	GRCh37	5	914647	914647	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004873-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			433	86	384	0	ENST00000166345.3:c.1088A>T	p.Glu363Val	p.E363V	ENST00000166345	NM_004237.3	363	gAa/gTa																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031348	11031348	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004873-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			384	70	491	0	ENST00000327064.4:c.1348A>G	p.Ile450Val	p.I450V	ENST00000327064	NM_199141.1	450	Atc/Gtc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134711	41134711	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004873-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			459	44	387	0	ENST00000379561.5:c.917A>T	p.Asp306Val	p.D306V	ENST00000379561	NM_002015.3	306	gAc/gTc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71102804	71102804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004873-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			417	52	380	1	ENST00000318789.4:c.403G>T	p.Ala135Ser	p.A135S	ENST00000318789	NM_032682.5	135	Gcc/Tcc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	441098	441098	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004873-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			477	65	392	0	ENST00000399788.2:c.1660A>T	p.Arg554Trp	p.R554W	ENST00000399788	NM_001042603.1	554	Agg/Tgg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048796	180048796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004873-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	53	446	0	ENST00000261937.6:c.1766G>T	p.Arg589Leu	p.R589L	ENST00000261937	NM_182925.4	589	cGc/cTc																																																																															
SMO	6608	MSKCC	GRCh37	7	128852159	128852159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004873-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			374	55	448	0	ENST00000249373.3:c.2231C>T	p.Pro744Leu	p.P744L	ENST00000249373	NM_005631.4	744	cCt/cTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29592291	29592291	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0004873-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			373	59	358	0	ENST00000358273.4:c.4769T>G	p.Leu1590Ter	p.L1590*	ENST00000358273	NM_001042492.2	1590	tTa/tGa																																																																															
ATRX	546	MSKCC	GRCh37	X	76829781	76829781	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004873-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			405	54	387	0	ENST00000373344.5:c.6260A>T	p.Asp2087Val	p.D2087V	ENST00000373344	NM_000489.3	2087	gAt/gTt																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61213431	61213431	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004873-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			415	80	371	0	ENST00000301761.2:c.389A>T	p.Glu130Val	p.E130V	ENST00000301761	NM_017841.2	130	gAa/gTa																																																																															
TRIP13	9319	MSKCC	GRCh37	5	912049	912049	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004873-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			483	68	383	0	ENST00000166345.3:c.958G>C	p.Gly320Arg	p.G320R	ENST00000166345	NM_004237.3	320	Ggg/Cgg																																																																															
CIC	23152	MSKCC	GRCh37	19	42799029	42799029	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004873-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			361	44	370	0	ENST00000575354.2:c.4513G>C	p.Val1505Leu	p.V1505L	ENST00000575354	NM_015125.3	1505	Gtt/Ctt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0078414-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			249	111	323	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55269452	55269467	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGCTTGCATTGATA	GTGGCTTGCATTGATA	-			P-0078414-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			235	73	436	0	ENST00000275493.2:c.3140_3155del	p.Val1047GlufsTer26	p.V1047Efs*26	ENST00000275493	NM_005228.3	1047	GTGGCTTGCATTGATAga/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0079093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	89	326	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0079093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	25	248	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0079093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	42	387	0	ENST00000257430.4:c.4391_4394del	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589601	67589601	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0079093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	37	233	0	ENST00000274335.5:c.1364A>C	p.Gln455Pro	p.Q455P	ENST00000274335		455	cAg/cCg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396486	30396486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	41	192	0	ENST00000331968.5:c.233G>A	p.Arg78His	p.R78H	ENST00000331968	NM_002742.2	78	cGc/cAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411572	63411572	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			69	51	135	0	ENST00000330258.3:c.1595del	p.Ser532ThrfsTer9	p.S532Tfs*9	ENST00000330258	NM_152424.3	532	aGc/ac																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230538	46230538	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0079093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	47	316	0	ENST00000334344.6:c.787G>T	p.Glu263Ter	p.E263*	ENST00000334344	NM_152641.2	263	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0079093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	23	215	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132437	11132437	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs281875227		P-0079093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	80	380	0	ENST00000344626.4:c.2653C>T	p.Arg885Cys	p.R885C	ENST00000344626	NM_003072.3	885	Cgc/Tgc																																																																															
CRKL	1399	MSKCC	GRCh37	22	21272248	21272248	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0079093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	41	290	0	ENST00000354336.3:c.26C>A	p.Ser9Ter	p.S9*	ENST00000354336	NM_005207.3	9	tCg/tAg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350472	15350472	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0079093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	64	220	0	ENST00000263377.2:c.3443A>G	p.Gln1148Arg	p.Q1148R	ENST00000263377	NM_058243.2	1148	cAg/cGg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5208065	5208066	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0079093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	78	318	0	ENST00000357368.4:c.5644_5645dup	p.Gly1883ProfsTer31	p.G1883Pfs*31	ENST00000357368	NM_002850.3	1882	gcc/gcGCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540652		P-0079096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	117	429	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0079096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	91	486	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153271192	153271192	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0079096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	40	347	0	ENST00000281708.4:c.584+2T>C		p.X195_splice	ENST00000281708	NM_033632.3	195																																																																																
NCOR1	9611	MSKCC	GRCh37	17	15984008	15984008	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	79	513	1	ENST00000268712.3:c.3211C>T	p.Gln1071Ter	p.Q1071*	ENST00000268712	NM_006311.3	1071	Cag/Tag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89352576	89352576	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762710349		P-0079096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	78	377	1	ENST00000301030.4:c.763C>T	p.Arg255Trp	p.R255W	ENST00000301030	NM_001256183.1	255	Cgg/Tgg																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56811530	56811530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	50	400	0	ENST00000337432.4:c.1078G>A	p.Glu360Lys	p.E360K	ENST00000337432	NM_058216.2	360	Gaa/Aaa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11199443	11199443	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746116382		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	131	281	0	ENST00000361445.4:c.5048G>A	p.Arg1683Gln	p.R1683Q	ENST00000361445	NM_004958.3	1683	cGg/cAg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258893	16258893	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs74842071		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	215	370	0	ENST00000375759.3:c.6158A>C	p.Asn2053Thr	p.N2053T	ENST00000375759	NM_015001.2	2053	aAc/aCc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097622	27097622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	146	316	1	ENST00000324856.7:c.3216del	p.Lys1072AsnfsTer21	p.K1072Nfs*21	ENST00000324856	NM_006015.4	1071	Aaa/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	48	357	2	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599271	28599271	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1457528646		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	167	371	0	ENST00000253063.3:c.722del	p.Pro241GlnfsTer6	p.P241Qfs*6	ENST00000253063	NM_031459.4	239	agC/ag																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs769210858		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	30	307	1	ENST00000361632.4:c.1404del	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439637	51439637	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs781400938		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	132	352	0	ENST00000262662.1:c.202C>T	p.Arg68Ter	p.R68*	ENST00000262662		68	Cga/Tga																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430905	78430906	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1405120226		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	124	307	0	ENST00000370768.2:c.483dup	p.Arg162ThrfsTer8	p.R162Tfs*8	ENST00000370768	NM_003902.3	161	-/A																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	80	287	0	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	35	414	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939260	71939260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	143	347	0	ENST00000298229.2:c.209G>A	p.Arg70His	p.R70H	ENST00000298229	NM_001567.3	70	cGc/cAc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	33	252	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431873	49431874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1333678798		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	173	404	0	ENST00000301067.7:c.9265dup	p.Val3089GlyfsTer9	p.V3089Gfs*9	ENST00000301067	NM_003482.3	3089	gtg/gGtg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	47	404	0	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	41	356	1	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445311	49445311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	65	504	0	ENST00000301067.7:c.2155C>T	p.Pro719Ser	p.P719S	ENST00000301067	NM_003482.3	719	Ccg/Tcg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912396	32912396	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs543339423		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	20	292	0	ENST00000380152.3:c.3904A>G	p.Thr1302Ala	p.T1302A	ENST00000380152		1302	Act/Gct																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	38	284	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	77	362	0	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43730536	43730536	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	29	281	0	ENST00000382044.4:c.3177del	p.Thr1060ProfsTer36	p.T1060Pfs*36	ENST00000382044	NM_001141980.1	1059	ccC/cc																																																																															
BLM	641	MSKCC	GRCh37	15	91310207	91310208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1480134889		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	80	290	0	ENST00000355112.3:c.2268dup	p.Asp757ArgfsTer18	p.D757Rfs*18	ENST00000355112	NM_000057.2	754	tca/tcAa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14026116	14026116	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	46	290	0	ENST00000311895.7:c.1081del	p.Met361TrpfsTer15	p.M361Wfs*15	ENST00000311895	NM_005236.2	359	gAa/ga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121539	2121539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	46	348	0	ENST00000219476.3:c.1868C>T	p.Ala623Val	p.A623V	ENST00000219476	NM_000548.3	623	gCc/gTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822563	72822564	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC	rs376311468		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	97	397	0	ENST00000268489.5:c.9609_9611dup	p.Gln3204dup	p.Q3204dup	ENST00000268489	NM_006885.3	3204	caa/caGCAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991344	72991344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148024459		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	139	271	0	ENST00000268489.5:c.2701G>A	p.Ala901Thr	p.A901T	ENST00000268489	NM_006885.3	901	Gcc/Acc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969933	81969933	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752209691		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	106	341	0	ENST00000359376.3:c.3002G>A	p.Arg1001His	p.R1001H	ENST00000359376	NM_002661.3	1001	cGc/cAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351057	89351057	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	14	337	0	ENST00000301030.4:c.1893del	p.Lys631AsnfsTer22	p.K631Nfs*22	ENST00000301030	NM_001256183.1	631	aaA/aa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	53	326	0	ENST00000268712.3:c.1573dup	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																															
CDK12	51755	MSKCC	GRCh37	17	37676243	37676243	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	33	309	0	ENST00000447079.4:c.2998A>G	p.Met1000Val	p.M1000V	ENST00000447079	NM_015083.1	1000	Atg/Gtg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs80357522		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	41	356	0	ENST00000357654.3:c.1961del	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532555	63532555	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730881401		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	144	333	0	ENST00000307078.5:c.2024G>A	p.Arg675His	p.R675H	ENST00000307078	NM_004655.3	675	cGt/cAt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117851	70117851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	150	334	0	ENST00000245479.2:c.319C>T	p.Arg107Trp	p.R107W	ENST00000245479	NM_000346.3	107	Cgg/Tgg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10270726	10270726	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	34	343	0	ENST00000340748.4:c.1009del	p.Met337TrpfsTer8	p.M337Wfs*8	ENST00000340748		337	Atg/tg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291084	10291084	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	270	641	2	ENST00000340748.4:c.387del	p.Lys130AsnfsTer129	p.K130Nfs*129	ENST00000340748		129	ccC/cc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220506	1220506	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	52	348	0	ENST00000326873.7:c.597+2T>C		p.X199_splice	ENST00000326873	NM_000455.4	199																																																																																
DNAJB1	3337	MSKCC	GRCh37	19	14626932	14626932	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	54	329	0	ENST00000254322.2:c.843A>G	p.Ile281Met	p.I281M	ENST00000254322	NM_006145.1	281	atA/atG																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15308382	15308383	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs749829137		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	97	323	0	ENST00000263388.2:c.125dup	p.Cys43LeufsTer32	p.C43Lfs*32	ENST00000263388	NM_000435.2	42	cct/ccCt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218425	36218425	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	114	289	0	ENST00000222270.7:c.4204C>T	p.Arg1402Ter	p.R1402*	ENST00000222270	NM_014727.1	1402	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218451	36218451	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	94	269	0	ENST00000222270.7:c.4235del	p.Gly1412AlafsTer10	p.G1412Afs*10	ENST00000222270	NM_014727.1	1410	caG/ca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219934	36219934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	44	430	0	ENST00000222270.7:c.4736G>A	p.Arg1579His	p.R1579H	ENST00000222270	NM_014727.1	1579	cGt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228065	36228065	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1285582819		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	118	392	0	ENST00000222270.7:c.7451G>A	p.Arg2484His	p.R2484H	ENST00000222270	NM_014727.1	2484	cGt/cAt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918708	50918708	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768799892		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	128	279	0	ENST00000440232.2:c.2578G>A	p.Ala860Thr	p.A860T	ENST00000440232	NM_002691.3	860	Gcg/Acg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5240271	5240271	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	33	295	0	ENST00000357368.4:c.1643del	p.Pro548ArgfsTer37	p.P548Rfs*37	ENST00000357368	NM_002850.3	548	cCg/cg																																																																															
CASP8	841	MSKCC	GRCh37	2	202139625	202139626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	148	289	0	ENST00000358485.4:c.790dup	p.Val264GlyfsTer13	p.V264Gfs*13	ENST00000358485	NM_001080125.1	262	-/G																																																																															
CASP8	841	MSKCC	GRCh37	2	202150001	202150001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	40	353	0	ENST00000358485.4:c.1442T>C	p.Ile481Thr	p.I481T	ENST00000358485	NM_001080125.1	481	aTc/aCc																																																																															
CASP8	841	MSKCC	GRCh37	2	202150030	202150030	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs931648756		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	154	337	1	ENST00000358485.4:c.1471C>T	p.Arg491Ter	p.R491*	ENST00000358485	NM_001080125.1	491	Cga/Tga																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	68	407	2	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	159	351	7	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																															
SRC	6714	MSKCC	GRCh37	20	36030877	36030877	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751005087		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	44	279	0	ENST00000358208.4:c.1156G>A	p.Val386Ile	p.V386I	ENST00000358208		386	Gtc/Atc																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22153366	22153366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	142	333	0	ENST00000215832.6:c.544G>T	p.Gly182Trp	p.G182W	ENST00000215832	NM_002745.4	182	Ggg/Tgg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445999	29445999	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	84	276	0	ENST00000544604.2:c.1835del	p.Gly612AlafsTer54	p.G612Afs*54	ENST00000544604	NM_001206998.1	610	gcG/gc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138456660	138456660	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	26	294	0	ENST00000289153.2:c.690del	p.Lys230AsnfsTer3	p.K230Nfs*3	ENST00000289153	NM_006219.2	230	aaA/aa																																																																															
ATR	545	MSKCC	GRCh37	3	142274740	142274741	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	24	288	0	ENST00000350721.4:c.2319_2320del	p.Lys773AsnfsTer3	p.K773Nfs*3	ENST00000350721	NM_001184.3	773	aaAAta/aata																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	24	342	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP63	8626	MSKCC	GRCh37	3	189612251	189612251	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758317410		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	132	315	0	ENST00000264731.3:c.2003G>A	p.Arg668His	p.R668H	ENST00000264731	NM_003722.4	668	cGc/cAc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	244	345	17	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021817	71021817	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs797045586		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	127	294	0	ENST00000318789.4:c.1541G>A	p.Arg514His	p.R514H	ENST00000318789	NM_032682.5	514	cGt/cAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213911	66213911	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	31	287	0	ENST00000273854.3:c.2519T>A	p.Ile840Asn	p.I840N	ENST00000273854	NM_004439.5	840	aTt/aAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270108	66270108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756653935		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	42	263	0	ENST00000273854.3:c.1774G>A	p.Val592Ile	p.V592I	ENST00000273854	NM_004439.5	592	Gtc/Atc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	45	353	1	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053023	180053023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	130	358	1	ENST00000261937.6:c.1267del	p.Gln423ArgfsTer70	p.Q423Rfs*70	ENST00000261937	NM_182925.4	423	Cag/ag																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	161	302	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001374	150001374	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	30	365	0	ENST00000253339.5:c.2230C>T	p.Arg744Ter	p.R744*	ENST00000253339		744	Cga/Tga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099468	157099470	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-	rs1429292576		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	115	329	0	ENST00000346085.5:c.413_415del	p.Asn138del	p.N138del	ENST00000346085	NM_020732.3	135	tcCAAc/tcc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323309	31323309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			30	10	37	0	ENST00000412585.2:c.680G>A	p.Cys227Tyr	p.C227Y	ENST00000412585	NM_005514.6	227	tGc/tAc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324016	31324016	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs72558118		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			94	16	94	0	ENST00000412585.2:c.547T>C	p.Tyr183His	p.Y183H	ENST00000412585	NM_005514.6	183	Tac/Cac																																																																															
IRF4	3662	MSKCC	GRCh37	6	393199	393199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	118	342	0	ENST00000380956.4:c.47C>T	p.Ala16Val	p.A16V	ENST00000380956	NM_001195286.1	16	gCg/gTg																																																																															
SMO	6608	MSKCC	GRCh37	7	128829075	128829075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1247591045		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	29	240	0	ENST00000249373.3:c.88del	p.Ala30ArgfsTer25	p.A30Rfs*25	ENST00000249373	NM_005631.4	28	cGg/cg																																																																															
SMO	6608	MSKCC	GRCh37	7	128852120	128852120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1168512964		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	53	379	0	ENST00000249373.3:c.2192C>T	p.Thr731Ile	p.T731I	ENST00000249373	NM_005631.4	731	aCc/aTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	123	268	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873523	151873523	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	96	374	0	ENST00000262189.6:c.9015del	p.Thr3006GlnfsTer26	p.T3006Qfs*26	ENST00000262189	NM_170606.2	3005	ggG/gg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729408	41729408	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	35	376	0	ENST00000242208.4:c.1121A>G	p.Asn374Ser	p.N374S	ENST00000242208	NM_002192.2	374	aAc/aGc																																																																															
HGF	3082	MSKCC	GRCh37	7	81381472	81381472	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777593933		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	23	286	0	ENST00000222390.5:c.589C>T	p.Arg197Cys	p.R197C	ENST00000222390	NM_000601.4	197	Cgc/Tgc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	43	375	2	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
LYN	4067	MSKCC	GRCh37	8	56912103	56912103	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	20	274	0	ENST00000519728.1:c.1331A>G	p.Tyr444Cys	p.Y444C	ENST00000519728	NM_002350.3	444	tAc/tGc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68950480	68950481	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	99	250	0	ENST00000288368.4:c.798dup	p.Leu267SerfsTer4	p.L267Sfs*4	ENST00000288368	NM_024870.2	264	-/T																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970964	21970964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	186	389	0	ENST00000304494.5:c.394G>A	p.Ala132Thr	p.A132T	ENST00000304494	NM_000077.4	132	Gcg/Acg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	37	298	1	ENST00000331920.6:c.3921del	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	33	287	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98232173	98232175	+	inframe_deletion	In_Frame_Del	DEL	AGC	AGC	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	133	286	0	ENST00000331920.6:c.1767_1769del	p.Leu590del	p.L590del	ENST00000331920	NM_000264.3	589	ctGCTc/ctc																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123480601	123480601	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1484550706		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	103	294	0	ENST00000371139.4:c.109G>A	p.Val37Met	p.V37M	ENST00000371139	NM_001114937.2	37	Gtg/Atg																																																																															
MED12	9968	MSKCC	GRCh37	X	70361183	70361183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	30	377	0	ENST00000374080.3:c.6371C>T	p.Ala2124Val	p.A2124V	ENST00000374080		2124	gCg/gTg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28601492	28601492	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	134	350	2	ENST00000253063.3:c.1177A>G	p.Ile393Val	p.I393V	ENST00000253063	NM_031459.4	393	Atc/Gtc																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363049	40363049	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	46	263	0	ENST00000397332.2:c.1180T>C	p.Tyr394His	p.Y394H	ENST00000397332	NM_001033082.2	394	Tac/Cac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307465	118307465	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs782191019		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	35	212	0	ENST00000534358.1:c.238G>C	p.Ala80Pro	p.A80P	ENST00000534358	NM_005933.3	80	Gcc/Ccc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456540	32456540	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	14	201	0	ENST00000332351.3:c.352T>C	p.Ser118Pro	p.S118P	ENST00000332351	NM_024426.4	118	Tcg/Ccg																																																																															
HRAS	3265	MSKCC	GRCh37	11	533535	533535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	176	386	0	ENST00000311189.7:c.368G>A	p.Arg123His	p.R123H	ENST00000311189		123	cGc/cAc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67198983	67198983	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	43	227	0	ENST00000312629.5:c.454A>G	p.Ser152Gly	p.S152G	ENST00000312629	NM_003952.2	152	Agt/Ggt																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518572	69518572	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	17	261	1	ENST00000294312.3:c.73C>A	p.Leu25Ile	p.L25I	ENST00000294312	NM_005117.2	25	Ctc/Atc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633602	69633602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	81	238	0	ENST00000334134.2:c.100G>A	p.Gly34Ser	p.G34S	ENST00000334134	NM_005247.2	34	Ggc/Agc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022903	12022903	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	38	467	0	ENST00000396373.4:c.1009G>T	p.Asp337Tyr	p.D337Y	ENST00000396373	NM_001987.4	337	Gac/Tac																																																																															
POLE	5426	MSKCC	GRCh37	12	133238207	133238207	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369751686		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	38	293	0	ENST00000320574.5:c.2770C>T	p.Arg924Cys	p.R924C	ENST00000320574	NM_006231.2	924	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398238	25398238	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	56	208	0	ENST00000256078.4:c.81T>G	p.His27Gln	p.H27Q	ENST00000256078	NM_033360.2	27	caT/caG																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56490291	56490291	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	50	302	0	ENST00000267101.3:c.2060T>C	p.Ile687Thr	p.I687T	ENST00000267101	NM_001982.3	687	aTa/aCa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912771	32912771	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	118	365	0	ENST00000380152.3:c.4284del	p.Gln1429ArgfsTer19	p.Q1429Rfs*19	ENST00000380152		1427	Ttt/tt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610567	81610567	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	87	334	0	ENST00000298171.2:c.2168del	p.Lys723ArgfsTer6	p.K723Rfs*6	ENST00000298171	NM_000369.2	722	cAa/ca																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023309	33023309	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	42	352	0	ENST00000300177.4:c.418T>C	p.Ser140Pro	p.S140P	ENST00000300177	NM_001191322.1	140	Tcc/Ccc																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86545083	86545083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	120	321	0	ENST00000262426.4:c.908G>A	p.Ser303Asn	p.S303N	ENST00000262426	NM_001451.2	303	aGc/aAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862745	9862746	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	21	278	0	ENST00000330684.3:c.2557_2558del	p.Cys853LeufsTer24	p.C853Lfs*24	ENST00000330684	NM_001134407.1	853	TGc/c																																																																															
NF1	4763	MSKCC	GRCh37	17	29588826	29588826	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	31	264	0	ENST00000358273.4:c.4675T>C	p.Trp1559Arg	p.W1559R	ENST00000358273	NM_001042492.2	1559	Tgg/Cgg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879664	37879666	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	162	440	0	ENST00000269571.5:c.2042_2044del	p.Lys681del	p.K681del	ENST00000269571		680	cAGAag/cag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881354	37881354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	49	346	0	ENST00000269571.5:c.2546G>A	p.Arg849Gln	p.R849Q	ENST00000269571		849	cGg/cAg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40500406	40500406	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	132	257	0	ENST00000264657.5:c.128+1G>A		p.X43_splice	ENST00000264657	NM_139276.2	43																																																																																
RNF43	54894	MSKCC	GRCh37	17	56448292	56448293	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	349	335	0	ENST00000407977.2:c.354dup	p.Cys119LeufsTer6	p.C119Lfs*6	ENST00000407977		118	-/C																																																																															
YES1	7525	MSKCC	GRCh37	18	756754	756754	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	173	353	0	ENST00000314574.4:c.74T>C	p.Val25Ala	p.V25A	ENST00000314574	NM_005433.3	25	gTc/gCc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367852	15367852	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	146	313	0	ENST00000263377.2:c.1474A>G	p.Ser492Gly	p.S492G	ENST00000263377	NM_058243.2	492	Agc/Ggc																																																																															
CIC	23152	MSKCC	GRCh37	19	42793187	42793187	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	159	400	0	ENST00000575354.2:c.1079T>C	p.Val360Ala	p.V360A	ENST00000575354	NM_015125.3	360	gTa/gCa																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45872350	45872350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	57	350	0	ENST00000391945.4:c.161C>T	p.Ala54Val	p.A54V	ENST00000391945	NM_000400.3	54	gCc/gTc																																																																															
RRAS	6237	MSKCC	GRCh37	19	50139974	50139974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	133	321	0	ENST00000246792.3:c.355G>A	p.Val119Met	p.V119M	ENST00000246792	NM_006270.3	119	Gtg/Atg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274280	5274280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	122	300	0	ENST00000357368.4:c.167C>T	p.Ala56Val	p.A56V	ENST00000357368	NM_002850.3	56	gCc/gTc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25978943	25978943	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	81	260	0	ENST00000435504.4:c.980T>G	p.Leu327Arg	p.L327R	ENST00000435504		327	cTt/cGt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39240694	39240694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	106	274	0	ENST00000402219.2:c.2074G>A	p.Val692Ile	p.V692I	ENST00000402219	NM_005633.3	692	Gta/Ata																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279777	29279792	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCAGGGGCCACGGG	GCCCAGGGGCCACGGG	-			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			58	33	78	0	ENST00000544604.2:c.23_38del	p.Arg8ProfsTer109	p.R8Pfs*109	ENST00000544604	NM_001206998.1	8	cGCCCAGGGGCCACGGGc/cc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446850	29446850	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs533046492		P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	19	267	0	ENST00000544604.2:c.2681C>T	p.Pro894Leu	p.P894L	ENST00000544604	NM_001206998.1	894	cCg/cTg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12393155	12393155	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	131	328	0	ENST00000287820.6:c.64T>C	p.Ser22Pro	p.S22P	ENST00000287820	NM_015869.4	22	Tct/Cct																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138453615	138453615	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	77	276	0	ENST00000289153.2:c.833T>C	p.Leu278Pro	p.L278P	ENST00000289153	NM_006219.2	278	cTg/cCg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162103	47162103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	28	299	0	ENST00000409792.3:c.4023G>T	p.Trp1341Cys	p.W1341C	ENST00000409792	NM_014159.6	1341	tgG/tgT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165489	47165489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	61	425	0	ENST00000409792.3:c.637G>A	p.Ala213Thr	p.A213T	ENST00000409792	NM_014159.6	213	Gcc/Acc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52621392	52621392	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	44	270	0	ENST00000394830.3:c.3025A>G	p.Lys1009Glu	p.K1009E	ENST00000394830	NM_018313.4	1009	Aag/Gag																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143181696	143181696	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	78	257	0	ENST00000262992.4:c.637A>G	p.Thr213Ala	p.T213A	ENST00000262992	NM_001101669.1	213	Aca/Gca																																																																															
KIT	3815	MSKCC	GRCh37	4	55593385	55593385	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	35	255	0	ENST00000288135.5:c.1542G>T	p.Glu514Asp	p.E514D	ENST00000288135	NM_000222.2	514	gaG/gaT																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31493337	31493337	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	24	284	0	ENST00000344624.3:c.1819T>C	p.Phe607Leu	p.F607L	ENST00000344624		607	Ttt/Ctt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864344	162864344	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	92	261	0	ENST00000366898.1:c.169C>T	p.Gln57Ter	p.Q57*	ENST00000366898	NM_004562.2	57	Cag/Tag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30668384	30668384	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	35	315	0	ENST00000376406.3:c.6128C>A	p.Pro2043His	p.P2043H	ENST00000376406	NM_014641.2	2043	cCt/cAt																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31236952	31236952	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	33	250	0	ENST00000376228.5:c.1097-2A>G		p.X366_splice	ENST00000376228	NM_002117.5	366																																																																																
HLA-C	3107	MSKCC	GRCh37	6	31239098	31239098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	42	363	0	ENST00000376228.5:c.371G>T	p.Gly124Val	p.G124V	ENST00000376228	NM_002117.5	124	gGc/gTc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508030	106508030	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	115	311	0	ENST00000359195.3:c.24G>T	p.Gln8His	p.Q8H	ENST00000359195	NM_002649.2	8	caG/caT																																																																															
EZH2	2146	MSKCC	GRCh37	7	148507451	148507451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	50	259	0	ENST00000320356.2:c.2003G>A	p.Cys668Tyr	p.C668Y	ENST00000320356	NM_004456.4	668	tGc/tAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845603	151845603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	154	410	1	ENST00000262189.6:c.13409C>T	p.Ala4470Val	p.A4470V	ENST00000262189	NM_170606.2	4470	gCc/gTc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739419	145739419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	40	317	0	ENST00000428558.2:c.1951G>A	p.Asp651Asn	p.D651N	ENST00000428558	NM_004260.3	651	Gac/Aac																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271733	38271733	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	38	435	0	ENST00000425967.3:c.2216A>G	p.Glu739Gly	p.E739G	ENST00000425967	NM_001174067.1	739	gAa/gGa																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2123896	2123896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	139	298	0	ENST00000349721.2:c.3940G>A	p.Val1314Met	p.V1314M	ENST00000349721	NM_003070.3	1314	Gtg/Atg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8331707	8331707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	120	284	0	ENST00000356435.5:c.5409C>A	p.Phe1803Leu	p.F1803L	ENST00000356435		1803	ttC/ttA																																																																															
STAG2	10735	MSKCC	GRCh37	X	123220592	123220592	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	56	257	0	ENST00000218089.9:c.3249A>C	p.Lys1083Asn	p.K1083N	ENST00000218089	NM_001042749.1	1083	aaA/aaC																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922298	39922298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	96	272	0	ENST00000378444.4:c.3874C>T	p.Pro1292Ser	p.P1292S	ENST00000378444	NM_001123385.1	1292	Ccc/Tcc																																																																															
ARAF	369	MSKCC	GRCh37	X	47424749	47424749	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0079136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	119	348	0	ENST00000377045.4:c.557G>T	p.Ser186Ile	p.S186I	ENST00000377045	NM_001654.4	186	aGc/aTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0079141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	65	288	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0079141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	70	353	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
RB1	5925	MSKCC	GRCh37	13	49027160	49027160	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0079141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	93	327	0	ENST00000267163.4:c.1727C>G	p.Ser576Ter	p.S576*	ENST00000267163	NM_000321.2	576	tCa/tGa																																																																															
WT1	7490	MSKCC	GRCh37	11	32410628	32410628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	54	362	0	ENST00000332351.3:c.1530G>T	p.Met510Ile	p.M510I	ENST00000332351	NM_024426.4	510	atG/atT																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749392	43749392	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	59	332	0	ENST00000382044.4:c.1414C>G	p.Leu472Val	p.L472V	ENST00000382044	NM_001141980.1	472	Ctg/Gtg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21348288	21348288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	68	502	0	ENST00000215739.8:c.1429G>A	p.Ala477Thr	p.A477T	ENST00000215739	NM_006767.3	477	Gcg/Acg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77090374	77090374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	77	338	0	ENST00000356341.3:c.351G>T	p.Gln117His	p.Q117H	ENST00000356341	NM_002576.4	117	caG/caT																																																																															
KIT	3815	MSKCC	GRCh37	4	55598132	55598132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	90	394	0	ENST00000288135.5:c.2329G>T	p.Ala777Ser	p.A777S	ENST00000288135	NM_000222.2	777	Gca/Tca																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608334	28608334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	101	470	0	ENST00000241453.7:c.1722C>A	p.Ser574Arg	p.S574R	ENST00000241453	NM_004119.2	574	agC/agA																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206763	36206763	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	73	360	0	ENST00000300305.3:c.749G>T	p.Arg250Leu	p.R250L	ENST00000300305		250	cGt/cTt																																																																															
FYN	2534	MSKCC	GRCh37	6	111983021	111983021	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	47	443	0	ENST00000368678.4:c.1526C>G	p.Thr509Ser	p.T509S	ENST00000368678		509	aCt/aGt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944737	71944737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	52	462	0	ENST00000298229.2:c.2161G>T	p.Val721Leu	p.V721L	ENST00000298229	NM_001567.3	721	Gtg/Ttg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28602362	28602362	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	106	354	0	ENST00000241453.7:c.2006G>C	p.Gly669Ala	p.G669A	ENST00000241453	NM_004119.2	669	gGa/gCa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092958	27092959	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGCCCAGAGATGATGGGCCT			P-0020628-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			441	103	391	0	ENST00000324856.7:c.2890_2909dup	p.Gly971AlafsTer4	p.G971Afs*4	ENST00000324856	NM_006015.4	963	-/AGCCCAGAGATGATGGGCCT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577501	7577501	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-	rs1427471466		P-0064621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			20	415	424	0	ENST00000269305.4:c.780del	p.Ser261ValfsTer84	p.S261Vfs*84	ENST00000269305	NM_001126112.2	260	tcC/tc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390732	139390732	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			22	344	701	0	ENST00000277541.6:c.7459C>T	p.Gln2487Ter	p.Q2487*	ENST00000277541	NM_017617.3	2487	Cag/Tag																																																																															
NADK	65220	MSKCC	GRCh37	1	1685603	1685603	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750455546		P-0064621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	263	556	0	ENST00000341426.5:c.988G>A	p.Ala330Thr	p.A330T	ENST00000341426	NM_023018.4	330	Gcg/Acg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123244969	123244981	+	frameshift_variant	Frame_Shift_Del	DEL	AGTTCCTCCACGG	AGTTCCTCCACGG	-			P-0064621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	132	665	0	ENST00000358487.5:c.2123_2135del	p.Pro708LeufsTer5	p.P708Lfs*5	ENST00000358487	NM_000141.4	708	cCCGTGGAGGAACTt/ct																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175958556	175958556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	175	444	0	ENST00000367669.3:c.1789G>C	p.Gly597Arg	p.G597R	ENST00000367669	NM_022457.5	597	Gga/Cga																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170013729	170013729	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	392	364	0	ENST00000295797.4:c.1448G>C	p.Arg483Pro	p.R483P	ENST00000295797	NM_002740.5	483	cGt/cCt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37089151	37089151	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			17	368	523	0	ENST00000231790.2:c.1873T>A	p.Tyr625Asn	p.Y625N	ENST00000231790	NM_000249.3	625	Tat/Aat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878973	151878973	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0064621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	601	601	1	ENST00000262189.6:c.5972C>A	p.Ser1991Ter	p.S1991*	ENST00000262189	NM_170606.2	1991	tCa/tAa																																																																															
IRF4	3662	MSKCC	GRCh37	6	398831	398831	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs538810711		P-0078367-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	39	571	0	ENST00000380956.4:c.641G>T	p.Cys214Phe	p.C214F	ENST00000380956	NM_001195286.1	214	tGc/tTc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243809	41243809	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80357191		P-0078367-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			497	46	639	0	ENST00000357654.3:c.3739G>A	p.Val1247Ile	p.V1247I	ENST00000357654	NM_007294.3	1247	Gtt/Att																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971126	21971126	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078367-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			366	13	0	0	ENST00000304494.5:c.232C>G	p.Leu78Val	p.L78V	ENST00000304494	NM_000077.4	78	Ctc/Gtc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44879926	44879926	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			21	58	187	0	ENST00000377967.4:c.515G>C	p.Arg172Pro	p.R172P	ENST00000377967	NM_021140.2	172	cGa/cCa																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61197647	61197647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078718-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			314	50	407	0	ENST00000301761.2:c.29C>T	p.Ser10Leu	p.S10L	ENST00000301761	NM_017841.2	10	tCg/tTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15965075	15965075	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078718-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			300	79	582	0	ENST00000268712.3:c.5521G>C	p.Glu1841Gln	p.E1841Q	ENST00000268712	NM_006311.3	1841	Gag/Cag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850861	63850861	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078718-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			345	60	539	0	ENST00000279873.7:c.1639C>G	p.Leu547Val	p.L547V	ENST00000279873	NM_032199.2	547	Ctg/Gtg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21626569	21626569	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199740132		P-0078718-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	57	376	1	ENST00000421138.2:c.1363C>T	p.Arg455Cys	p.R455C	ENST00000421138		455	Cgt/Tgt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118368642	118368649	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	ATTTTATA	ATTTTATA	T			P-0078718-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	58	397	0	ENST00000534358.1:c.5665-9_5665-2delinsT		p.X1889_splice	ENST00000534358	NM_005933.3	1889																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27106024	27106024	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369894428		P-0078823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			568	42	642	1	ENST00000324856.7:c.5635C>T	p.Arg1879Trp	p.R1879W	ENST00000324856	NM_006015.4	1879	Cgg/Tgg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729767	41729767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			496	27	524	0	ENST00000242208.4:c.762G>T	p.Leu254Phe	p.L254F	ENST00000242208	NM_002192.2	254	ttG/ttT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100301	27100301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			491	31	633	0	ENST00000324856.7:c.4013C>T	p.Ser1338Phe	p.S1338F	ENST00000324856	NM_006015.4	1338	tCc/tTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105650	27105650	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			445	34	619	0	ENST00000324856.7:c.5261C>G	p.Ser1754Cys	p.S1754C	ENST00000324856	NM_006015.4	1754	tCt/tGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106316	27106316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	35	500	0	ENST00000324856.7:c.5927C>T	p.Ser1976Phe	p.S1976F	ENST00000324856	NM_006015.4	1976	tCt/tTt																																																																															
NF2	4771	MSKCC	GRCh37	22	30057222	30057222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			458	35	601	0	ENST00000338641.4:c.704G>C	p.Gly235Ala	p.G235A	ENST00000338641	NM_000268.3	235	gGa/gCa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134992	2134992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			338	14	0	0	ENST00000219476.3:c.4534G>T	p.Asp1512Tyr	p.D1512Y	ENST00000219476	NM_000548.3	1512	Gac/Tac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097790	27097790	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			450	31	532	0	ENST00000324856.7:c.3379C>T	p.Gln1127Ter	p.Q1127*	ENST00000324856	NM_006015.4	1127	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0078823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	61	351	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106612	27106612	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			466	30	570	0	ENST00000324856.7:c.6223C>A	p.Pro2075Thr	p.P2075T	ENST00000324856	NM_006015.4	2075	Cca/Aca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092809	27092809	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs754315348		P-0078823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			322	17	536	0	ENST00000324856.7:c.2830C>A	p.Gln944Lys	p.Q944K	ENST00000324856	NM_006015.4	944	Cag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106645	27106645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			479	25	0	0	ENST00000324856.7:c.6256G>T	p.Asp2086Tyr	p.D2086Y	ENST00000324856	NM_006015.4	2086	Gac/Tac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096040	11096041	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0078823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			392	33	573	0	ENST00000344626.4:c.314_315delinsTT	p.Gly105Val	p.G105V	ENST00000344626	NM_003072.3	105	gGG/gTT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40747048	40747048	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			346	22	406	0	ENST00000373198.4:c.3034G>T	p.Gly1012Cys	p.G1012C	ENST00000373198	NM_133170.3	1012	Ggc/Tgc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748960	43748960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			472	27	663	0	ENST00000382044.4:c.1846G>A	p.Val616Ile	p.V616I	ENST00000382044	NM_001141980.1	616	Gta/Ata																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439833	51439833	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			572	41	530	0	ENST00000262662.1:c.398G>T	p.Arg133Leu	p.R133L	ENST00000262662		133	cGg/cTg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149506141	149506141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	35	576	0	ENST00000261799.4:c.1616T>C	p.Leu539Pro	p.L539P	ENST00000261799	NM_002609.3	539	cTg/cCg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522017	157522017	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	27	531	0	ENST00000346085.5:c.4289del	p.Glu1430GlyfsTer18	p.E1430Gfs*18	ENST00000346085	NM_020732.3	1430	gAg/gg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554101	63554114	+	frameshift_variant	Frame_Shift_Del	DEL	CCATTACTCATGTA	CCATTACTCATGTA	-			P-0078823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			482	47	622	0	ENST00000307078.5:c.625_638del	p.Tyr209GlyfsTer17	p.Y209Gfs*17	ENST00000307078	NM_004655.3	209	TACATGAGTAATGGg/g																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0079130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			67	71	245	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0079130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			9	99	405	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0079130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	98	476	0	ENST00000346208.3:c.1220dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488548	231488548	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0079130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	124	347	0	ENST00000295050.7:c.911T>C	p.Phe304Ser	p.F304S	ENST00000295050	NM_032018.5	304	tTt/tCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0079150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	9	420	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023267	31023269	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0079151-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	97	574	0	ENST00000375687.4:c.2752_2754del	p.His918del	p.H918del	ENST00000375687	NM_015338.5	918	CAC/-																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271270	26271270	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079151-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	124	672	0	ENST00000305910.3:c.343G>T	p.Ala115Ser	p.A115S	ENST00000305910	NM_003534.2	115	Gct/Tct																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492714	56492715	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0079151-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	110	486	0	ENST00000407977.2:c.224_225del	p.Ile75AsnfsTer20	p.I75Nfs*20	ENST00000407977		75	aTA/a																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0079163-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	10	285	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs397517199		P-0079163-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	31	407	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913407		P-0079163-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	163	540	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604773	48604773	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079163-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	16	571	0	ENST00000342988.3:c.1597del	p.Leu533SerfsTer4	p.L533Sfs*4	ENST00000342988	NM_005359.5	532	gCc/gc																																																																															
PARP1	142	MSKCC	GRCh37	1	226558164	226558164	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758506201		P-0079163-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1246	112	517	2	ENST00000366794.5:c.2125G>A	p.Ala709Thr	p.A709T	ENST00000366794	NM_001618.3	709	Gca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427998	49427998	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0079167-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	67	484	0	ENST00000301067.7:c.10592A>C	p.Gln3531Pro	p.Q3531P	ENST00000301067	NM_003482.3	3531	cAg/cCg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134286	41134286	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0079167-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	56	531	0	ENST00000379561.5:c.1342A>T	p.Ser448Cys	p.S448C	ENST00000379561	NM_002015.3	448	Agt/Tgt																																																																															
MET	4233	MSKCC	GRCh37	7	116411887	116411901	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TTCTCTCTGTTTTAA	TTCTCTCTGTTTTAA	-			P-0079167-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	392	620	1	ENST00000397752.3:c.2888-16_2888-2del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
POT1	25913	MSKCC	GRCh37	7	124510991	124510991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079167-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	336	336	0	ENST00000357628.3:c.229G>A	p.Asp77Asn	p.D77N	ENST00000357628	NM_015450.2	77	Gat/Aat																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981302	201981302	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079167-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	41	531	0	ENST00000359651.3:c.382del	p.Leu128SerfsTer27	p.L128Sfs*27	ENST00000359651		127	gaC/ga																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932857	36932857	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079167-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	54	549	0	ENST00000361632.4:c.2014T>C	p.Ser672Pro	p.S672P	ENST00000361632		672	Tcc/Ccc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281120	49281120	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0079167-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	71	484	0	ENST00000282018.3:c.167A>C	p.Asn56Thr	p.N56T	ENST00000282018	NM_020377.2	56	aAt/aCt																																																																															
REL	5966	MSKCC	GRCh37	2	61145553	61145564	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	TGAACGATTGGG	TGAACGATTGGG	-			P-0079167-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	38	532	0	ENST00000295025.8:c.665_676del	p.Leu222_Glu226delinsTer	p.L222_E226delins*	ENST00000295025	NM_002908.2	222	tTGAACGATTGGGaa/taa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170142	32170142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079167-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	55	527	0	ENST00000375023.3:c.3466G>A	p.Gly1156Ser	p.G1156S	ENST00000375023	NM_004557.3	1156	Ggc/Agc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0076758-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			92	66	407	0	ENST00000263967.3:c.3132T>G	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaG																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45860619	45860619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076758-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			323	8	561	0	ENST00000391945.4:c.1388C>T	p.Pro463Leu	p.P463L	ENST00000391945	NM_000400.3	463	cCg/cTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114259	115114259	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076758-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			227	139	421	0	ENST00000257566.3:c.958C>T	p.Gln320Ter	p.Q320*	ENST00000257566	NM_016569.3	320	Cag/Tag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060785	38060786	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0076758-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			233	174	662	0	ENST00000250448.2:c.1203dup	p.Ile402HisfsTer13	p.I402Hfs*13	ENST00000250448	NM_004496.3	401	-/C																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114205	115114205	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076758-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			208	156	455	0	ENST00000257566.3:c.1012del	p.Glu338SerfsTer23	p.E338Sfs*23	ENST00000257566	NM_016569.3	338	Gag/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0079132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	221	303	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933744	49933744	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs750582514		P-0079132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	148	386	0	ENST00000296474.3:c.2533C>T	p.Arg845Ter	p.R845*	ENST00000296474	NM_002447.2	845	Cga/Tga																																																																															
FLT1	2321	MSKCC	GRCh37	13	28931788	28931788	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0079132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	943	340	0	ENST00000282397.4:c.2151del	p.Phe717LeufsTer43	p.F717Lfs*43	ENST00000282397	NM_002019.4	717	ttT/tt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056178	27056178	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	141	369	0	ENST00000324856.7:c.1174C>G	p.Pro392Ala	p.P392A	ENST00000324856	NM_006015.4	392	Cct/Gct																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060985	38060991	+	frameshift_variant	Frame_Shift_Del	DEL	AGAGTCT	AGAGTCT	-			P-0079132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	93	324	0	ENST00000250448.2:c.998_1004del	p.Gln333ArgfsTer15	p.Q333Rfs*15	ENST00000250448	NM_004496.3	333	cAGACTCTg/cg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0079133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	27	413	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912660		P-0079133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	61	406	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0079133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	63	448	0	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa																																																																															
CDH1	999	MSKCC	GRCh37	16	68842631	68842632	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0079133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	41	431	0	ENST00000261769.5:c.568dup	p.Tyr190LeufsTer9	p.Y190Lfs*9	ENST00000261769	NM_004360.3	189	-/T																																																																															
TP63	8626	MSKCC	GRCh37	3	189526217	189526217	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1320669467		P-0079133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			735	78	494	0	ENST00000264731.3:c.481C>T	p.Pro161Ser	p.P161S	ENST00000264731	NM_003722.4	161	Cca/Tca																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660269	227660270	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0079133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	58	372	0	ENST00000305123.5:c.3185dup	p.Gln1064ThrfsTer17	p.Q1064Tfs*17	ENST00000305123	NM_005544.2	1062	ggc/ggGc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637740	52637740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	18	259	0	ENST00000394830.3:c.2576C>T	p.Ser859Leu	p.S859L	ENST00000394830	NM_018313.4	859	tCa/tTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087360	27087360	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	55	371	0	ENST00000324856.7:c.1934del	p.Ser645Ter	p.S645*	ENST00000324856	NM_006015.4	645	tCa/ta																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021217	31021217	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	64	441	0	ENST00000375687.4:c.1218del	p.His407IlefsTer55	p.H407Ifs*55	ENST00000375687	NM_015338.5	406	Ggg/gg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31020753	31020753	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	26	334	0	ENST00000375687.4:c.1050G>A	p.Trp350Ter	p.W350*	ENST00000375687	NM_015338.5	350	tgG/tgA																																																																															
PMS1	5378	MSKCC	GRCh37	2	190708793	190708793	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	28	272	0	ENST00000441310.2:c.686C>G	p.Ser229Cys	p.S229C	ENST00000441310	NM_000534.4	229	tCt/tGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259514	55259515	+	missense_variant	Missense_Mutation	DNP	CT	CT	AG	rs1057519847		P-0079134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	32	361	0	ENST00000275493.2:c.2572_2573inv	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	CTg/AGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040990	47040990	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	27	415	0	ENST00000329236.7:c.1286del	p.Ile429ThrfsTer197	p.I429Tfs*197	ENST00000329236	NM_001204466.1	429	aTc/ac																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228066	53228066	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0079134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	43	407	0	ENST00000375401.3:c.2248C>G	p.Arg750Gly	p.R750G	ENST00000375401	NM_004187.3	750	Cgg/Ggg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12650414	12650414	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	35	313	0	ENST00000251849.4:c.432G>T	p.Lys144Asn	p.K144N	ENST00000251849	NM_002880.3	144	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0079181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	289	457	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087346	27087346	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0079181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	351	354	0	ENST00000324856.7:c.1921-1G>T		p.X641_splice	ENST00000324856	NM_006015.4	641																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0079181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	185	292	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50483666	50483666	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0079181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	10	217	0	ENST00000394963.4:c.772-1G>A		p.X258_splice	ENST00000394963	NM_003076.4	258																																																																																
TNFAIP3	7128	MSKCC	GRCh37	6	138196097	138196097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	139	497	0	ENST00000237289.4:c.411C>G	p.Asn137Lys	p.N137K	ENST00000237289	NM_001270507.1	137	aaC/aaG																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38282138	38282138	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	284	577	0	ENST00000425967.3:c.918C>A	p.Phe306Leu	p.F306L	ENST00000425967	NM_001174067.1	306	ttC/ttA																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687523	37687534	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGAGTCCCAC	CAAGAGTCCCAC	TAAGA			P-0079181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	236	471	1	ENST00000447079.4:c.4427_4438delinsTAAGA	p.Thr1476IlefsTer21	p.T1476Ifs*21	ENST00000447079	NM_015083.1	1476	aCAAGAGTCCCACca/aTAAGAca																																																																															
MET	4233	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0064410-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			590	120	360	0	ENST00000397752.3:c.3028+2T>A		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31021688	31021688	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064410-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			656	37	297	0	ENST00000375687.4:c.1687A>G	p.Thr563Ala	p.T563A	ENST00000375687	NM_015338.5	563	Act/Gct																																																																															
APC	324	MSKCC	GRCh37	5	112176061	112176061	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064410-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			664	45	378	0	ENST00000257430.4:c.4770A>T	p.Lys1590Asn	p.K1590N	ENST00000257430	NM_000038.5	1590	aaA/aaT																																																																															
AR	367	MSKCC	GRCh37	X	66766187	66766187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067582-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			443	50	422	0	ENST00000374690.3:c.1199C>T	p.Ala400Val	p.A400V	ENST00000374690	NM_000044.3	400	gCg/gTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881002	37881003	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTCCCCA			P-0067582-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			435	205	420	0	ENST00000269571.5:c.2332_2340dup	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	-/GGCTCCCCA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061261	38061261	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067582-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			194	229	397	0	ENST00000250448.2:c.728A>G	p.Tyr243Cys	p.Y243C	ENST00000250448	NM_004496.3	243	tAc/tGc																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38793817	38793817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067582-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	57	273	0	ENST00000348513.6:c.164C>A	p.Ser55Tyr	p.S55Y	ENST00000348513	NM_003079.4	55	tCt/tAt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18691117	18691122	+	inframe_deletion	In_Frame_Del	DEL	AGAGAT	AGAGAT	-			P-0067582-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			701	47	222	0	ENST00000266497.5:c.3228_3233del	p.Met1078_Glu1079del	p.M1078_E1079del	ENST00000266497		1076	tcAGAGATg/tcg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178614	56178615	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067582-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			303	240	320	0	ENST00000399503.3:c.3588dup	p.Ala1197SerfsTer15	p.A1197Sfs*15	ENST00000399503	NM_005921.1	1196	tca/tcAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189356	56189356	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0067582-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			362	111	280	0	ENST00000399503.3:c.4390-2A>G		p.X1464_splice	ENST00000399503	NM_005921.1	1464																																																																																
BRAF	673	MSKCC	GRCh37	7	140549937	140549937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	20	235	0	ENST00000288602.6:c.214C>T	p.His72Tyr	p.H72Y	ENST00000288602	NM_004333.4	72	Cat/Tat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259514	55259515	+	missense_variant	Missense_Mutation	DNP	CT	CT	AG	rs1057519847		P-0078988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	170	247	0	ENST00000275493.2:c.2572_2573inv	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	CTg/AGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0078996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	44	398	6	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913273		P-0078996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	24	215	5	ENST00000263967.3:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000263967	NM_006218.2	542	Gaa/Caa																																																																															
APC	324	MSKCC	GRCh37	5	112175232	112175232	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	152	418	10	ENST00000257430.4:c.3942del	p.Arg1314SerfsTer7	p.R1314Sfs*7	ENST00000257430	NM_000038.5	1314	aGg/ag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942124	81942124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781434235		P-0078996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	90	475	11	ENST00000359376.3:c.1661C>T	p.Thr554Met	p.T554M	ENST00000359376	NM_002661.3	554	aCg/aTg																																																																															
ATM	472	MSKCC	GRCh37	11	108172509	108172510	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	70	344	8	ENST00000278616.4:c.5318dup	p.Phe1774ValfsTer8	p.F1774Vfs*8	ENST00000278616	NM_000051.3	1771	aga/agAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0078996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	29	273	2	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628307	187628307	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	94	490	5	ENST00000441802.2:c.2675C>G	p.Ser892Cys	p.S892C	ENST00000441802	NM_005245.3	892	tCc/tGc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72881616	72881616	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	61	264	3	ENST00000325599.8:c.503T>C	p.Val168Ala	p.V168A	ENST00000325599	NM_018130.2	168	gTt/gCt																																																																															
KDR	3791	MSKCC	GRCh37	4	55948771	55948771	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185368292		P-0078996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	45	311	8	ENST00000263923.4:c.3694C>T	p.Arg1232Trp	p.R1232W	ENST00000263923	NM_002253.2	1232	Cgg/Tgg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786204864		P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			414	51	286	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			701	170	513	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18650557	18650557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			378	39	322	0	ENST00000266497.5:c.2768G>A	p.Gly923Glu	p.G923E	ENST00000266497		923	gGa/gAa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39593533	39593533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			315	29	307	0	ENST00000262039.4:c.1298C>T	p.Ser433Phe	p.S433F	ENST00000262039	NM_002647.2	433	tCt/tTt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010560	48010560	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587779920		P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			835	75	421	0	ENST00000234420.5:c.188C>G	p.Ser63Cys	p.S63C	ENST00000234420	NM_000179.2	63	tCc/tGc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942049	81942049	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1013382788		P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			773	70	438	0	ENST00000359376.3:c.1586G>T	p.Gly529Val	p.G529V	ENST00000359376	NM_002661.3	529	gGg/gTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602584	10602584	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			642	187	479	0	ENST00000171111.5:c.994G>C	p.Gly332Arg	p.G332R	ENST00000171111	NM_203500.1	332	Ggc/Cgc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31449462	31449462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			741	72	342	0	ENST00000344624.3:c.2747C>T	p.Ser916Leu	p.S916L	ENST00000344624		916	tCa/tTa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117755	70117755	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1034	78	532	0	ENST00000245479.2:c.223G>C	p.Glu75Gln	p.E75Q	ENST00000245479	NM_000346.3	75	Gag/Cag																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876536	35876536	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			901	96	427	0	ENST00000303115.3:c.1328C>G	p.Ser443Ter	p.S443*	ENST00000303115	NM_002185.3	443	tCa/tGa																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430247	181430247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			551	141	398	0	ENST00000325404.1:c.99C>A	p.Asn33Lys	p.N33K	ENST00000325404	NM_003106.3	33	aaC/aaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			334	88	235	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919083	178919083	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			507	36	326	0	ENST00000263967.3:c.568A>G	p.Ile190Val	p.I190V	ENST00000263967	NM_006218.2	190	Ata/Gta																																																																															
JUN	3725	MSKCC	GRCh37	1	59248169	59248169	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs551506166		P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1018	93	448	0	ENST00000371222.2:c.574G>A	p.Ala192Thr	p.A192T	ENST00000371222	NM_002228.3	192	Gcg/Acg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46583373	46583373	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			904	150	412	0	ENST00000263734.3:c.301G>T	p.Val101Leu	p.V101L	ENST00000263734	NM_001430.4	101	Gtg/Ttg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379664	17379664	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			624	67	415	0	ENST00000359435.4:c.49G>C	p.Glu17Gln	p.E17Q	ENST00000359435	NM_001033549.1	17	Gag/Cag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274055	10274055	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			888	86	449	0	ENST00000330684.3:c.214C>A	p.Leu72Met	p.L72M	ENST00000330684	NM_001134407.1	72	Ctg/Atg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541367	187541367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763005237		P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			664	83	415	0	ENST00000441802.2:c.6373G>A	p.Glu2125Lys	p.E2125K	ENST00000441802	NM_005245.3	2125	Gaa/Aaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56171028	56171028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			927	104	397	0	ENST00000399503.3:c.1856C>T	p.Thr619Ile	p.T619I	ENST00000399503	NM_005921.1	619	aCc/aTc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205676	128205676	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			718	92	358	0	ENST00000341105.2:c.199C>G	p.Arg67Gly	p.R67G	ENST00000341105	NM_032638.4	67	Cgg/Ggg																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2492068	2492068	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772454862		P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			941	96	472	0	ENST00000355716.4:c.466G>A	p.Glu156Lys	p.E156K	ENST00000355716	NM_003820.2	156	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1294733	1294733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			784	79	422	0	ENST00000310581.5:c.268G>A	p.Glu90Lys	p.E90K	ENST00000310581	NM_198253.2	90	Gag/Aag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11175455	11175455	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			662	63	349	0	ENST00000361445.4:c.7087G>C	p.Glu2363Gln	p.E2363Q	ENST00000361445	NM_004958.3	2363	Gag/Cag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748399	162748399	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			760	168	442	0	ENST00000367921.3:c.2313G>A	p.Trp771Ter	p.W771*	ENST00000367921	NM_006182.2	771	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7574005	7574021	+	frameshift_variant	Frame_Shift_Del	DEL	AACATCTCGAAGCGCTC	AACATCTCGAAGCGCTC	-			P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			566	164	381	0	ENST00000269305.4:c.1006_1022del	p.Glu336ProfsTer5	p.E336Pfs*5	ENST00000269305	NM_001126112.2	336	GAGCGCTTCGAGATGTTc/c																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176132962	176132962	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			398	38	249	0	ENST00000367669.3:c.631G>T	p.Val211Leu	p.V211L	ENST00000367669	NM_022457.5	211	Gtg/Ttg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916232	9916232	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			861	182	446	0	ENST00000330684.3:c.2057C>A	p.Pro686His	p.P686H	ENST00000330684	NM_001134407.1	686	cCt/cAt																																																																															
PMS1	5378	MSKCC	GRCh37	2	190738263	190738263	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			425	125	285	0	ENST00000441310.2:c.2515G>T	p.Ala839Ser	p.A839S	ENST00000441310	NM_000534.4	839	Gct/Tct																																																																															
TRIP13	9319	MSKCC	GRCh37	5	914646	914646	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369447610		P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			768	80	396	0	ENST00000166345.3:c.1087G>A	p.Glu363Lys	p.E363K	ENST00000166345	NM_004237.3	363	Gaa/Aaa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522837	67522837	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			574	129	326	0	ENST00000274335.5:c.334G>T	p.Ala112Ser	p.A112S	ENST00000274335		112	Gct/Tct																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794498	242794498	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			824	198	435	0	ENST00000334409.5:c.444G>T	p.Arg148Ser	p.R148S	ENST00000334409	NM_005018.2	148	agG/agT																																																																															
RAD52	5893	MSKCC	GRCh37	12	1036414	1036414	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073462-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			717	128	332	0	ENST00000358495.3:c.364G>C	p.Glu122Gln	p.E122Q	ENST00000358495	NM_134424.2	122	Gaa/Caa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220622	1220622	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131690923		P-0078177-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	62	459	0	ENST00000326873.7:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000326873	NM_000455.4	214	Cag/Tag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0078177-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			187	23	362	0				ENST00000310581	NM_198253.2																																																																																	
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0078177-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			80	17	217	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600366	10600366	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078177-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			310	67	466	0	ENST00000171111.5:c.1489T>C	p.Trp497Arg	p.W497R	ENST00000171111	NM_203500.1	497	Tgg/Cgg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522607	157522607	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078177-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			198	39	323	0	ENST00000346085.5:c.4879A>T	p.Thr1627Ser	p.T1627S	ENST00000346085	NM_020732.3	1627	Acc/Tcc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048760	180048760	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078177-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			311	39	426	0	ENST00000261937.6:c.1802C>A	p.Ala601Glu	p.A601E	ENST00000261937	NM_182925.4	601	gCg/gAg																																																																															
IDH2	3418	MSKCC	GRCh37	15	90630370	90630370	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0078177-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			329	58	356	0	ENST00000330062.3:c.941del	p.Asp314ValfsTer16	p.D314Vfs*16	ENST00000330062	NM_002168.2	314	gAt/gt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201815	66201815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078177-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			249	23	317	0	ENST00000273854.3:c.2687G>T	p.Arg896Leu	p.R896L	ENST00000273854	NM_004439.5	896	cGt/cTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045565	47045567	+	frameshift_variant	Frame_Shift_Ins	INS	CTC	CTC	GTCT			P-0078177-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			180	30	258	0	ENST00000329236.7:c.2298_2300delinsGTCT	p.Val768CysfsTer14	p.V768Cfs*14	ENST00000329236	NM_001204466.1	766	gcCTCt/gcGTCTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0078243-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			472	326	451	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0078243-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			777	227	621	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43705415	43705415	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078243-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			503	86	547	0	ENST00000382044.4:c.5207G>T	p.Gly1736Val	p.G1736V	ENST00000382044	NM_001141980.1	1736	gGc/gTc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99250971	99250971	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078243-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			550	87	532	0	ENST00000268035.6:c.275G>T	p.Gly92Val	p.G92V	ENST00000268035	NM_000875.3	92	gGc/gTc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38978707	38978707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078243-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	99	351	0	ENST00000357387.3:c.799G>A	p.Asp267Asn	p.D267N	ENST00000357387	NM_152756.3	267	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs764146326		P-0078245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	159	461	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																																																															
SOS1	6654	MSKCC	GRCh37	2	39240630	39240630	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs483352826		P-0078245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			377	66	249	0	ENST00000402219.2:c.2138G>A	p.Arg713Gln	p.R713Q	ENST00000402219	NM_005633.3	713	cGa/cAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248980	55248981	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	TCCAGGAAGCCT			P-0078245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			525	203	426	0	ENST00000275493.2:c.2284-5_2290dup		p.X762_splice	ENST00000275493	NM_005228.3	762																																																																																
ATM	472	MSKCC	GRCh37	11	108216518	108216518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	127	287	2	ENST00000278616.4:c.8467G>T	p.Val2823Phe	p.V2823F	ENST00000278616	NM_000051.3	2823	Gtt/Ttt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41209086	41209086	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs80357432		P-0078245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			626	133	338	0	ENST00000357654.3:c.5260G>T	p.Glu1754Ter	p.E1754*	ENST00000357654	NM_007294.3	1754	Gaa/Taa																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544993	86544993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			271	86	352	0	ENST00000262426.4:c.818C>T	p.Ser273Leu	p.S273L	ENST00000262426	NM_001451.2	273	tCg/tTg																																																																															
REL	5966	MSKCC	GRCh37	2	61149402	61149402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			475	140	425	0	ENST00000295025.8:c.1592G>C	p.Arg531Thr	p.R531T	ENST00000295025	NM_002908.2	531	aGa/aCa																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27840018	27840018	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			598	162	519	0	ENST00000328488.2:c.76G>T	p.Ala26Ser	p.A26S	ENST00000328488	NM_003533.2	26	Gct/Tct																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830550	72830550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	154	435	0	ENST00000268489.5:c.6031C>T	p.Pro2011Ser	p.P2011S	ENST00000268489	NM_006885.3	2011	Cct/Tct																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145055	58145055	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1060501932		P-0078245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			595	171	406	0	ENST00000257904.6:c.289G>C	p.Asp97His	p.D97H	ENST00000257904	NM_000075.3	97	Gac/Cac																																																																															
NF1	4763	MSKCC	GRCh37	17	29663803	29663803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			647	121	418	0	ENST00000358273.4:c.6298C>T	p.Leu2100Phe	p.L2100F	ENST00000358273	NM_001042492.2	2100	Ctt/Ttt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176085764	176085764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			342	87	252	0	ENST00000367669.3:c.1022C>T	p.Ser341Phe	p.S341F	ENST00000367669	NM_022457.5	341	tCt/tTt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2979526	2979526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			504	108	382	0	ENST00000396946.4:c.721G>A	p.Glu241Lys	p.E241K	ENST00000396946	NM_032415.4	241	Gag/Aag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680512	30680512	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144473623		P-0078245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			509	132	426	0	ENST00000376406.3:c.1207G>A	p.Asp403Asn	p.D403N	ENST00000376406	NM_014641.2	403	Gat/Aat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0078543-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			548	450	325	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs876660821		P-0078558-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			834	31	520	1	ENST00000269305.4:c.537T>A	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caA																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672356	86672356	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078558-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			642	34	336	0	ENST00000274376.6:c.2158G>T	p.Glu720Ter	p.E720*	ENST00000274376	NM_002890.2	720	Gaa/Taa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575417	64575418	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0078647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	389	581	0	ENST00000337652.1:c.614_615del	p.Gly205GlufsTer17	p.G205Efs*17	ENST00000337652	NM_130803.2	205	gGC/g																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0078824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			618	320	501	2	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0078824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			202	299	482	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074158	8074159	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0078824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			220	279	476	0	ENST00000377482.5:c.500_501del	p.Thr167ArgfsTer3	p.T167Rfs*3	ENST00000377482	NM_018948.3	167	aCA/a																																																																															
NF2	4771	MSKCC	GRCh37	22	30054177	30054177	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0078824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			147	197	293	0	ENST00000338641.4:c.600-1G>T		p.X200_splice	ENST00000338641	NM_000268.3	200																																																																																
NSD1	64324	MSKCC	GRCh37	5	176707785	176707785	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs886041941		P-0078836-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	56	441	0	ENST00000439151.2:c.5842C>T	p.Arg1948Cys	p.R1948C	ENST00000439151	NM_022455.4	1948	Cgc/Tgc																																																																															
CD274	29126	MSKCC	GRCh37	9	5457093	5457093	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1485681345		P-0078836-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	62	345	0	ENST00000381577.3:c.67G>A	p.Val23Ile	p.V23I	ENST00000381577	NM_014143.3	23	Gtt/Att																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162168	47162183	+	frameshift_variant	Frame_Shift_Del	DEL	ACACAACCCCAGTTCC	ACACAACCCCAGTTCC	-			P-0078836-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	114	446	0	ENST00000409792.3:c.3943_3958del	p.Gly1315MetfsTer12	p.G1315Mfs*12	ENST00000409792	NM_014159.6	1315	GGAACTGGGGTTGTGTat/at																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278063	18278063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078836-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	67	399	1	ENST00000222254.8:c.1683C>A	p.Asn561Lys	p.N561K	ENST00000222254	NM_005027.3	561	aaC/aaA																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42843777	42843777	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078836-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	27	358	0	ENST00000398585.3:c.1142A>G	p.Asn381Ser	p.N381S	ENST00000398585	NM_001135099.1	381	aAt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934874		P-0078837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	107	410	0	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0078837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	57	207	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434042	49434043	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0078837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	92	383	0	ENST00000301067.7:c.7510_7511del	p.Gly2504Ter	p.G2504*	ENST00000301067	NM_003482.3	2504	GGt/t																																																																															
RB1	5925	MSKCC	GRCh37	13	48916767	48916777	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAATCTGTA	GGGAATCTGTA	T			P-0078837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	47	212	0	ENST00000267163.4:c.297_307delinsT	p.Trp99CysfsTer9	p.W99Cfs*9	ENST00000267163	NM_000321.2	99	tgGGGAATCTGTAtc/tgTtc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0078990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	272	422	0	ENST00000275493.2:c.2303_2311dup	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147486	47147486	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0078990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	63	507	0	ENST00000409792.3:c.4839+1G>C		p.X1613_splice	ENST00000409792	NM_014159.6	1613																																																																																
TNFAIP3	7128	MSKCC	GRCh37	6	138202332	138202332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1016313423		P-0078990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			711	66	446	0	ENST00000237289.4:c.2249G>A	p.Gly750Asp	p.G750D	ENST00000237289	NM_001270507.1	750	gGt/gAt																																																																															
POT1	25913	MSKCC	GRCh37	7	124469372	124469372	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	24	252	0	ENST00000357628.3:c.1530A>T	p.Arg510Ser	p.R510S	ENST00000357628	NM_015450.2	510	agA/agT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212568904	212568905	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0078990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	18	282	0	ENST00000342788.4:c.1213_1214del	p.Gln405ValfsTer8	p.Q405Vfs*8	ENST00000342788	NM_005235.2	405	CAg/g																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0078997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	176	444	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112154942	112154942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779780		P-0078997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	119	360	0	ENST00000257430.4:c.1213C>T	p.Arg405Ter	p.R405*	ENST00000257430	NM_000038.5	405	Cga/Tga																																																																															
PMS1	5378	MSKCC	GRCh37	2	190660639	190660639	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772181508		P-0078997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	35	367	0	ENST00000441310.2:c.277C>T	p.Arg93Cys	p.R93C	ENST00000441310	NM_000534.4	93	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604706	48604706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	10	378	0	ENST00000342988.3:c.1528G>A	p.Gly510Arg	p.G510R	ENST00000342988	NM_005359.5	510	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519976		P-0078997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	182	398	0	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																															
APC	324	MSKCC	GRCh37	5	112173912	112173912	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0078997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	142	415	0	ENST00000257430.4:c.2621C>G	p.Ser874Ter	p.S874*	ENST00000257430	NM_000038.5	874	tCa/tGa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396557	30396557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	119	276	0	ENST00000331968.5:c.162G>T	p.Gln54His	p.Q54H	ENST00000331968	NM_002742.2	54	caG/caT																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554347	63554347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	170	429	0	ENST00000307078.5:c.392C>T	p.Ala131Val	p.A131V	ENST00000307078	NM_004655.3	131	gCc/gTc																																																																															
SDHA	6389	MSKCC	GRCh37	5	240557	240557	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			47	19	45	0	ENST00000264932.6:c.1517T>C	p.Ile506Thr	p.I506T	ENST00000264932	NM_004168.2	506	aTa/aCa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114901073	114901075	+	splice_donor_variant,frameshift_variant	Splice_Site	INS	CAG	CAG	ACAT			P-0078997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	165	374	0	ENST00000543371.1:c.683_685delinsACAT		p.X228_splice	ENST00000543371	NM_001198531.1	228	aCAGga/aACATga																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	53	335	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0078999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	70	474	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0079028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	360	292	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032474	12032474	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	119	234	0	ENST00000353533.5:c.910C>T	p.Arg304Ter	p.R304*	ENST00000353533	NM_003010.3	304	Cga/Tga																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	327	275	0	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443832	49443832	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750754763		P-0079028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			998	238	496	0	ENST00000301067.7:c.3539C>T	p.Ser1180Leu	p.S1180L	ENST00000301067	NM_003482.3	1180	tCa/tTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486053	8486053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	263	436	0	ENST00000356435.5:c.2764C>T	p.Pro922Ser	p.P922S	ENST00000356435		922	Cct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0079055-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	87	255	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0079055-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	78	322	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480436	89480436	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1316383286		P-0079055-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	54	300	0	ENST00000336596.2:c.2273T>C	p.Leu758Ser	p.L758S	ENST00000336596	NM_005233.5	758	tTg/tCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0079056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	66	420	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0079056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	142	452	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624242	89624243	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0079056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	28	105	0	ENST00000371953.3:c.17_18del	p.Lys6ArgfsTer4	p.K6Rfs*4	ENST00000371953	NM_000314.4	6	AAa/a																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436393	52436393	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1244342890		P-0079056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	100	432	0	ENST00000460680.1:c.2101C>T	p.Arg701Cys	p.R701C	ENST00000460680	NM_004656.3	701	Cgc/Tgc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87359924	87359924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs78629699		P-0079056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	79	389	0	ENST00000277120.3:c.1232C>T	p.Thr411Met	p.T411M	ENST00000277120		411	aCg/aTg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71101751	71101751	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	69	377	0	ENST00000318789.4:c.447del	p.Lys149AsnfsTer57	p.K149Nfs*57	ENST00000318789	NM_032682.5	149	aaA/aa																																																																															
ABL1	25	MSKCC	GRCh37	9	133759623	133759623	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	101	421	0	ENST00000318560.5:c.1950del	p.Leu651TrpfsTer43	p.L651Wfs*43	ENST00000318560	NM_005157.4	649	aCc/ac																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202351	138202351	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	119	463	1	ENST00000237289.4:c.2274del	p.Lys759SerfsTer57	p.K759Sfs*57	ENST00000237289	NM_001270507.1	756	gaC/ga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259480	16259480	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0079056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	121	458	0	ENST00000375759.3:c.6750del	p.Ala2251GlnfsTer102	p.A2251Qfs*102	ENST00000375759	NM_015001.2	2249	Ccc/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993731	72993731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			775	47	492	0	ENST00000268489.5:c.314del	p.Pro105ArgfsTer4	p.P105Rfs*4	ENST00000268489	NM_006885.3	105	cCg/cg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	110	516	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39637994	39637994	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756468687		P-0079056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	60	316	0	ENST00000262039.4:c.2411C>T	p.Thr804Met	p.T804M	ENST00000262039	NM_002647.2	804	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829121	72829121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs550702576		P-0079056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	155	449	0	ENST00000268489.5:c.7460C>T	p.Ala2487Val	p.A2487V	ENST00000268489	NM_006885.3	2487	gCg/gTg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111014	193111014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	16	374	0	ENST00000367435.3:c.547G>A	p.Ala183Thr	p.A183T	ENST00000367435	NM_024529.4	183	Gct/Act																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31388042	31388042	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0079056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	66	409	0	ENST00000328111.2:c.1843A>G	p.Thr615Ala	p.T615A	ENST00000328111	NM_006892.3	615	Acc/Gcc																																																																															
NF1	4763	MSKCC	GRCh37	17	29554235	29554235	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0079056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	65	326	0	ENST00000358273.4:c.2252-1G>T		p.X751_splice	ENST00000358273	NM_001042492.2	751																																																																																
GATA3	2625	MSKCC	GRCh37	10	8100414	8100415	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0079056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			816	119	537	0	ENST00000346208.3:c.391_392del	p.Ser131ArgfsTer171	p.S131Rfs*171	ENST00000346208		130	CTc/c																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206653819	206653819	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	111	368	0	ENST00000367120.3:c.1370C>A	p.Thr457Asn	p.T457N	ENST00000367120	NM_014002.3	457	aCt/aAt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637285	47637286	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-	rs863224482		P-0079056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	88	375	0	ENST00000233146.2:c.421_422del	p.Met141ValfsTer10	p.M141Vfs*10	ENST00000233146	NM_000251.2	140	gAT/g																																																																															
RB1	5925	MSKCC	GRCh37	13	48919215	48919215	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0079056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	18	247	0	ENST00000267163.4:c.381-1G>A		p.X127_splice	ENST00000267163	NM_000321.2	127																																																																																
TBX3	6926	MSKCC	GRCh37	12	115117423	115117423	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0079056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	109	413	0	ENST00000257566.3:c.751del	p.Arg251GlyfsTer5	p.R251Gfs*5	ENST00000257566	NM_016569.3	251	Cgg/gg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974780	21974780	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079057-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	45	431	0	ENST00000304494.5:c.47T>A	p.Leu16Gln	p.L16Q	ENST00000304494	NM_000077.4	16	cTg/cAg																																																																															
RHOA	387	MSKCC	GRCh37	3	49397698	49397698	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0079057-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	35	352	0	ENST00000418115.1:c.526A>T	p.Arg176Ter	p.R176*	ENST00000418115	NM_001664.2	176	Aga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577585	7577609	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GATGGTGGTACAGTCAGAGCCAACC	GATGGTGGTACAGTCAGAGCCAACC	-			P-0079057-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	30	340	0	ENST00000269305.4:c.673-1_696del		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
RBM10	8241	MSKCC	GRCh37	X	47040950	47040950	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0079057-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	40	220	0	ENST00000329236.7:c.1246C>T	p.Gln416Ter	p.Q416*	ENST00000329236	NM_001204466.1	416	Cag/Tag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32172105	32172105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079057-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	79	412	0	ENST00000375023.3:c.2927C>A	p.Pro976His	p.P976H	ENST00000375023	NM_004557.3	976	cCc/cAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940723	71940723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079057-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			733	65	419	0	ENST00000298229.2:c.770G>T	p.Gly257Val	p.G257V	ENST00000298229	NM_001567.3	257	gGg/gTg																																																																															
SMO	6608	MSKCC	GRCh37	7	128846202	128846202	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146823157		P-0079057-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	49	497	0	ENST00000249373.3:c.1132G>A	p.Val378Met	p.V378M	ENST00000249373	NM_005631.4	378	Gtg/Atg																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488487	231488487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	65	388	0	ENST00000295050.7:c.850C>A	p.Leu284Ile	p.L284I	ENST00000295050	NM_032018.5	284	Ctt/Att																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0079060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	220	496	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
MYD88	4615	MSKCC	GRCh37	3	38181894	38181894	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772707495		P-0079060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	60	359	0	ENST00000396334.3:c.518G>A	p.Arg173His	p.R173H	ENST00000396334	NM_002468.4	173	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0079060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	105	267	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398123121		P-0079060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	112	353	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0079061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	155	377	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	205	345	0	ENST00000257430.4:c.3919dup	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250883	153250883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0079061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	107	318	0	ENST00000281708.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000281708	NM_033632.3	393	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0079061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	124	277	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs121913370		P-0079061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	99	277	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039405	47039405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0079061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	115	161	0	ENST00000329236.7:c.797G>A	p.Arg266His	p.R266H	ENST00000329236	NM_001204466.1	266	cGc/cAc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131977896	131977896	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367683141		P-0079061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	81	321	0	ENST00000265335.6:c.3779G>A	p.Arg1260His	p.R1260H	ENST00000265335		1260	cGt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249510	153249510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	138	378	0	ENST00000281708.4:c.1268G>A	p.Gly423Glu	p.G423E	ENST00000281708	NM_033632.3	423	gGa/gAa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030535	47030535	+	intron_variant	Intron	SNP	G	G	T			P-0079064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	133	299	0	ENST00000329236.7:c.201+1638G>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
FOXP1	27086	MSKCC	GRCh37	3	71015058	71015066	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGCCTGG	TCTGCCTGG	GGAA			P-0079064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	121	332	0	ENST00000318789.4:c.1864_1872delinsTTCC	p.Pro622PhefsTer23	p.P622Ffs*23	ENST00000318789	NM_032682.5	622	CCAGGCAGA/TTCC																																																																															
TP53	7157	MSKCC	GRCh37	17	7573975	7573975	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0079065-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	133	314	0	ENST00000269305.4:c.1052del	p.Lys351ArgfsTer19	p.K351Rfs*19	ENST00000269305	NM_001126112.2	351	aAg/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0079103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	224	387	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
RET	5979	MSKCC	GRCh37	10	43597792	43597792	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs747483905		P-0079103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	64	317	0	ENST00000355710.3:c.340C>A	p.Arg114Ser	p.R114S	ENST00000355710	NM_020975.4	114	Cgc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0079103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	151	219	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650542	48650542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	141	450	0	ENST00000376670.3:c.512C>A	p.Thr171Asn	p.T171N	ENST00000376670	NM_002049.3	171	aCc/aAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28919683	28919683	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	76	243	0	ENST00000282397.4:c.2254T>A	p.Ser752Thr	p.S752T	ENST00000282397	NM_002019.4	752	Tcg/Acg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10244899	10244899	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	132	288	0	ENST00000340748.4:c.4810G>T	p.Ala1604Ser	p.A1604S	ENST00000340748		1604	Gcc/Tcc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255583	16255583	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0079103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	77	346	0	ENST00000375759.3:c.2848G>T	p.Glu950Ter	p.E950*	ENST00000375759	NM_015001.2	950	Gaa/Taa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729490	41729490	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	125	382	0	ENST00000242208.4:c.1039G>T	p.Ala347Ser	p.A347S	ENST00000242208	NM_002192.2	347	Gcc/Tcc																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944928	31944928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	117	165	0	ENST00000340398.3:c.173C>A	p.Thr58Asn	p.T58N	ENST00000340398	NM_001013699.2	58	aCc/aAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348032	348032	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372115709		P-0079105-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1149	145	568	0	ENST00000262320.3:c.1474C>T	p.Arg492Cys	p.R492C	ENST00000262320	NM_003502.3	492	Cgc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517780	187517780	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780722653		P-0079105-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	167	444	0	ENST00000441802.2:c.12914C>T	p.Ala4305Val	p.A4305V	ENST00000441802	NM_005245.3	4305	gCg/gTg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152415537	152415537	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519714		P-0079105-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	466	426	0	ENST00000206249.3:c.1387T>C	p.Ser463Pro	p.S463P	ENST00000206249	NM_000125.3	463	Tcc/Ccc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933640	39933640	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780396086		P-0079105-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			905	153	533	0	ENST00000378444.4:c.959C>T	p.Ala320Val	p.A320V	ENST00000378444	NM_001123385.1	320	gCg/gTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942119	71942120	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079105-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	301	497	0	ENST00000298229.2:c.1384dup	p.Ile462AsnfsTer4	p.I462Nfs*4	ENST00000298229	NM_001567.3	461	-/A																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914752	32914752	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0079105-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	102	365	0	ENST00000380152.3:c.6260G>T	p.Arg2087Ile	p.R2087I	ENST00000380152		2087	aGa/aTa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88428950	88428950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0079105-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	57	245	0	ENST00000360948.2:c.2150G>T	p.Gly717Val	p.G717V	ENST00000360948	NM_001012338.2	717	gGa/gTa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88670448	88670448	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0079105-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	91	399	0	ENST00000360948.2:c.1238T>A	p.Val413Glu	p.V413E	ENST00000360948	NM_001012338.2	413	gTg/gAg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029305	14029319	+	inframe_deletion	In_Frame_Del	DEL	GAGGAAGGAGATGTC	GAGGAAGGAGATGTC	-			P-0079105-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1039	167	488	0	ENST00000311895.7:c.1525_1539del	p.Asp509_Gly513del	p.D509_G513del	ENST00000311895	NM_005236.2	506	GAGGAAGGAGATGTC/-																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58677939	58677939	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1443684200		P-0079105-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	99	387	1	ENST00000305921.3:c.164C>T	p.Pro55Leu	p.P55L	ENST00000305921	NM_003620.3	55	cCg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41514478	41514478	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0079105-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			790	216	426	0	ENST00000373198.4:c.183G>C	p.Glu61Asp	p.E61D	ENST00000373198	NM_133170.3	61	gaG/gaC																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932168	39932168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0079105-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			777	107	470	0	ENST00000378444.4:c.2431G>A	p.Glu811Lys	p.E811K	ENST00000378444	NM_001123385.1	811	Gaa/Aaa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0079106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	58	265	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0079106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	76	388	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135800991	135800993	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0079106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	60	293	0	ENST00000298552.3:c.344_346del	p.Ser115del	p.S115del	ENST00000298552	NM_001162426.1	115	tCTTta/tta																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492797	56492798	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0079106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	81	393	0	ENST00000407977.2:c.141dup	p.Ile48TyrfsTer27	p.I48Yfs*27	ENST00000407977		47	-/T																																																																															
RAD52	5893	MSKCC	GRCh37	12	1040386	1040386	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0079106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	61	278	0	ENST00000358495.3:c.186G>C	p.Lys62Asn	p.K62N	ENST00000358495	NM_134424.2	62	aaG/aaC																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2110328	2110328	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0079106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	46	380	0	ENST00000349721.2:c.3367T>G	p.Leu1123Val	p.L1123V	ENST00000349721	NM_003070.3	1123	Ttg/Gtg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519896		P-0066167-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	254	858	2	ENST00000281708.4:c.1514G>A	p.Arg505His	p.R505H	ENST00000281708	NM_033632.3	505	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578528	7578528	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066167-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	341	1016	0	ENST00000269305.4:c.402T>G	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	ttT/ttG																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138197249	138197249	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777456133		P-0066167-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	252	968	1	ENST00000237289.4:c.751G>A	p.Gly251Ser	p.G251S	ENST00000237289	NM_001270507.1	251	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112151191	112151191	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0066167-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	139	420	0	ENST00000257430.4:c.835-1G>A		p.X279_splice	ENST00000257430	NM_000038.5	279																																																																																
FANCA	2175	MSKCC	GRCh37	16	89874746	89874746	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066167-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	262	757	0	ENST00000389301.3:c.552T>A	p.His184Gln	p.H184Q	ENST00000389301	NM_000135.2	184	caT/caA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519995		P-0073954-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			125	125	374	0	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0073954-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			191	296	264	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			860	135	387	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	106	312	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103510737	103510737	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146833751		P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	91	356	0	ENST00000355739.4:c.641G>A	p.Arg214His	p.R214H	ENST00000355739	NM_000123.3	214	cGc/cAc																																																																															
CASP8	841	MSKCC	GRCh37	2	202141584	202141584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			797	115	344	0	ENST00000358485.4:c.872C>A	p.Pro291His	p.P291H	ENST00000358485	NM_001080125.1	291	cCt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			919	126	422	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519946		P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			872	119	429	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200631	67200631	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763667411		P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			926	132	442	0	ENST00000312629.5:c.742C>T	p.Arg248Trp	p.R248W	ENST00000312629	NM_003952.2	248	Cgg/Tgg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473723	67473723	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223740		P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			746	102	359	0	ENST00000327367.4:c.803G>A	p.Arg268His	p.R268H	ENST00000327367	NM_005902.3	268	cGc/cAc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982440	25982440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	141	349	0	ENST00000435504.4:c.850C>T	p.Arg284Ter	p.R284*	ENST00000435504		284	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	97	354	0	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			853	103	419	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			988	68	451	1	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	101	347	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883770	37883770	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747888253		P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1004	162	485	0	ENST00000269571.5:c.3382G>A	p.Val1128Ile	p.V1128I	ENST00000269571		1128	Gtt/Att																																																																															
B2M	567	MSKCC	GRCh37	15	45003779	45003779	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			758	126	385	0	ENST00000558401.1:c.35T>C	p.Leu12Pro	p.L12P	ENST00000558401	NM_004048.2	12	cTa/cCa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262102	10262102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			795	280	433	3	ENST00000340748.4:c.2189G>A	p.Arg730His	p.R730H	ENST00000340748		730	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs397517201		P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	34	213	0	ENST00000263967.3:c.1637A>T	p.Gln546Leu	p.Q546L	ENST00000263967	NM_006218.2	546	cAg/cTg																																																																															
BLM	641	MSKCC	GRCh37	15	91333930	91333930	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs762354041		P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			805	128	343	0	ENST00000355112.3:c.2875C>T	p.Arg959Ter	p.R959*	ENST00000355112	NM_000057.2	959	Cga/Tga																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661663	227661664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			818	101	430	0	ENST00000305123.5:c.1790_1791dup	p.His598GlyfsTer39	p.H598Gfs*39	ENST00000305123	NM_005544.2	597	-/GG																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30102151	30102151	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1439477100		P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	54	263	0	ENST00000331968.5:c.1316G>A	p.Arg439Gln	p.R439Q	ENST00000331968	NM_002742.2	439	cGg/cAg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867301	45867301	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1269826858		P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			752	171	389	1	ENST00000391945.4:c.892G>A	p.Ala298Thr	p.A298T	ENST00000391945	NM_000400.3	298	Gcc/Acc																																																																															
CIC	23152	MSKCC	GRCh37	19	42791587	42791587	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767502801		P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			977	166	472	0	ENST00000575354.2:c.568C>T	p.Arg190Cys	p.R190C	ENST00000575354	NM_015125.3	190	Cgc/Tgc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118954	70118954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			862	158	503	0	ENST00000245479.2:c.526C>T	p.Pro176Ser	p.P176S	ENST00000245479	NM_000346.3	176	Ccg/Tcg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39285864	39285864	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	35	274	0	ENST00000402219.2:c.295C>T	p.Arg99Ter	p.R99*	ENST00000402219	NM_005633.3	99	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	111	246	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2181665	2181665	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	72	231	0	ENST00000349721.2:c.4354del	p.Ile1452Ter	p.I1452*	ENST00000349721	NM_003070.3	1450	Aaa/aa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923853	39923853	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			860	155	377	0	ENST00000378444.4:c.3239-1G>A		p.X1080_splice	ENST00000378444	NM_001123385.1	1080																																																																																
MED12	9968	MSKCC	GRCh37	X	70347807	70347807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			899	168	408	0	ENST00000374080.3:c.3046C>T	p.Arg1016Cys	p.R1016C	ENST00000374080		1016	Cgc/Tgc																																																																															
TET2	54790	MSKCC	GRCh37	4	106196484	106196484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587778702		P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			839	147	461	0	ENST00000380013.4:c.4817G>A	p.Gly1606Asp	p.G1606D	ENST00000380013	NM_001127208.2	1606	gGt/gAt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53243894	53243894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			850	205	342	0	ENST00000375401.3:c.1099C>T	p.Arg367Trp	p.R367W	ENST00000375401	NM_004187.3	367	Cgg/Tgg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62298845	62298845	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs770742969		P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			743	101	383	0	ENST00000482936.1:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000482936		213	cGg/cAg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190743	11190743	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			988	59	458	0	ENST00000361445.4:c.5456A>G	p.His1819Arg	p.H1819R	ENST00000361445	NM_004958.3	1819	cAt/cGt																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231487089	231487089	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	99	291	0	ENST00000295050.7:c.490C>T	p.Arg164Ter	p.R164*	ENST00000295050	NM_032018.5	164	Cga/Tga																																																																															
TERT	7015	MSKCC	GRCh37	5	1295642	1295642	+	upstream_gene_variant	5'Flank	SNP	T	T	C			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			844	124	452	0				ENST00000310581	NM_198253.2																																																																																	
CTNNB1	1499	MSKCC	GRCh37	3	41275730	41275730	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs551257843		P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			791	138	366	0	ENST00000349496.5:c.1625G>A	p.Arg542His	p.R542H	ENST00000349496	NM_001904.3	542	cGt/cAt																																																																															
SESN1	27244	MSKCC	GRCh37	6	109322558	109322559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	86	355	0	ENST00000436639.2:c.478dup	p.Thr160AsnfsTer40	p.T160Nfs*40	ENST00000436639	NM_014454.2	160	act/aAct																																																																															
TEK	7010	MSKCC	GRCh37	9	27109589	27109589	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	36	241	0	ENST00000380036.4:c.1A>G	p.Met1?	p.M1?	ENST00000380036	NM_000459.3	1	Atg/Gtg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87325696	87325696	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	91	285	0	ENST00000277120.3:c.573A>G	p.Ile191Met	p.I191M	ENST00000277120		191	atA/atG																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61306512	61306512	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			734	114	379	0	ENST00000341074.5:c.675G>T	p.Glu225Asp	p.E225D	ENST00000341074	NM_002974.2	225	gaG/gaT																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119112	70119112	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	117	387	0	ENST00000245479.2:c.685+1del		p.S228fs	ENST00000245479	NM_000346.3	228	tcG/tc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52709254	52709254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			736	129	361	0	ENST00000322088.6:c.208G>A	p.Ala70Thr	p.A70T	ENST00000322088	NM_014225.5	70	Gca/Aca																																																																															
PPARG	5468	MSKCC	GRCh37	3	12421332	12421332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			845	122	358	0	ENST00000287820.6:c.212C>A	p.Ser71Tyr	p.S71Y	ENST00000287820	NM_015869.4	71	tCc/tAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954181	32954181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	55	366	0	ENST00000380152.3:c.9155G>A	p.Arg3052Gln	p.R3052Q	ENST00000380152		3052	cGg/cAg																																																																															
TEK	7010	MSKCC	GRCh37	9	27212747	27212747	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			821	119	338	0	ENST00000380036.4:c.2729T>G	p.Leu910Arg	p.L910R	ENST00000380036	NM_000459.3	910	cTt/cGt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681580	30681580	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			936	148	439	0	ENST00000376406.3:c.517G>T	p.Asp173Tyr	p.D173Y	ENST00000376406	NM_014641.2	173	Gat/Tat																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650282	48650282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1007	206	475	0	ENST00000376670.3:c.252G>T	p.Met84Ile	p.M84I	ENST00000376670	NM_002049.3	84	atG/atT																																																																															
SPEN	23013	MSKCC	GRCh37	1	16264065	16264065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			956	151	506	1	ENST00000375759.3:c.10434C>A	p.Phe3478Leu	p.F3478L	ENST00000375759	NM_015001.2	3478	ttC/ttA																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175956224	175956224	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	44	249	0	ENST00000367669.3:c.1988C>A	p.Ser663Tyr	p.S663Y	ENST00000367669	NM_022457.5	663	tCt/tAt																																																																															
ATRX	546	MSKCC	GRCh37	X	76888803	76888803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	100	390	0	ENST00000373344.5:c.5026G>T	p.Gly1676Cys	p.G1676C	ENST00000373344	NM_000489.3	1676	Ggt/Tgt																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2029072	2029072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			924	128	483	0	ENST00000349721.2:c.50C>T	p.Pro17Leu	p.P17L	ENST00000349721	NM_003070.3	17	cCg/cTg																																																																															
MSI1	4440	MSKCC	GRCh37	12	120805879	120805879	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1021	152	417	0	ENST00000257552.2:c.199A>G	p.Thr67Ala	p.T67A	ENST00000257552	NM_002442.3	67	Act/Gct																																																																															
USP8	9101	MSKCC	GRCh37	15	50751258	50751258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202135045		P-0078851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			797	121	342	0	ENST00000307179.4:c.397C>T	p.Arg133Trp	p.R133W	ENST00000307179		133	Cgg/Tgg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1292426539		P-0078965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	28	357	0	ENST00000250448.2:c.781C>G	p.Arg261Gly	p.R261G	ENST00000250448	NM_004496.3	261	Cgc/Ggc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354287	15354287	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1291730650		P-0078965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	33	333	0	ENST00000263377.2:c.2593G>A	p.Ala865Thr	p.A865T	ENST00000263377	NM_058243.2	865	Gca/Aca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259538	55259538	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756703787		P-0078965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	20	329	0	ENST00000275493.2:c.2596G>A	p.Glu866Lys	p.E866K	ENST00000275493	NM_005228.3	866	Gag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061133	38061133	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751299919		P-0078965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	13	365	0	ENST00000250448.2:c.856G>A	p.Gly286Ser	p.G286S	ENST00000250448	NM_004496.3	286	Ggc/Agc																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538898	23538898	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0078965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	41	326	0	ENST00000380871.4:c.541C>T	p.Arg181Ter	p.R181*	ENST00000380871	NM_006167.3	181	Cga/Tga																																																																															
PARP1	142	MSKCC	GRCh37	1	226576443	226576443	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777349003		P-0078965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	17	366	0	ENST00000366794.5:c.631G>A	p.Asp211Asn	p.D211N	ENST00000366794	NM_001618.3	211	Gat/Aat																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244508	46244508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	85	389	0	ENST00000334344.6:c.2602C>A	p.Gln868Lys	p.Q868K	ENST00000334344	NM_152641.2	868	Cag/Aag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37673791	37673791	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	36	268	0	ENST00000447079.4:c.2945T>A	p.Leu982Gln	p.L982Q	ENST00000447079	NM_015083.1	982	cTa/cAa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618858	37618858	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	45	434	0	ENST00000447079.4:c.534del	p.Lys178AsnfsTer13	p.K178Nfs*13	ENST00000447079	NM_015083.1	178	aaG/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911555	114911555	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078972-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	256	365	0	ENST00000543371.1:c.1073T>A	p.Met358Lys	p.M358K	ENST00000543371	NM_001198531.1	358	aTg/aAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346594	89346594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078972-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	222	415	0	ENST00000301030.4:c.6356C>T	p.Pro2119Leu	p.P2119L	ENST00000301030	NM_001256183.1	2119	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934573		P-0078972-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	309	384	0	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	30955532	30955532	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs567076886		P-0078972-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	364	265	0	ENST00000375687.4:c.143G>A	p.Ser48Asn	p.S48N	ENST00000375687	NM_015338.5	48	aGt/aAt																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078972-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	191	373	1	ENST00000257430.4:c.3919dup	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112174383	112174384	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0078972-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	228	358	0	ENST00000257430.4:c.3094dup	p.Ser1032PhefsTer3	p.S1032Ffs*3	ENST00000257430	NM_000038.5	1031	tat/taTt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560464	95560464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078979-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	34	322	0	ENST00000343455.3:c.5125G>A	p.Asp1709Asn	p.D1709N	ENST00000343455	NM_177438.2	1709	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577132	7577132	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	18	374	0	ENST00000269305.4:c.806del	p.Ser269ThrfsTer76	p.S269Tfs*76	ENST00000269305	NM_001126112.2	269	aGc/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0078981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	20	263	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729094	66729099	+	inframe_deletion	In_Frame_Del	DEL	TGGAGA	TGGAGA	-			P-0078984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	391	586	0	ENST00000307102.5:c.303_308del	p.Glu102_Ile103del	p.E102_I103del	ENST00000307102	NM_002755.3	101	cTGGAGAtc/ctc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998483	100998483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	77	1022	0	ENST00000325455.5:c.1319C>T	p.Thr440Met	p.T440M	ENST00000325455	NM_001202474.3	440	aCg/aTg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348223	348223	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755028316		P-0078984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	187	884	3	ENST00000262320.3:c.1283C>T	p.Ser428Leu	p.S428L	ENST00000262320	NM_003502.3	428	tCg/tTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9984856	9984856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	151	577	0	ENST00000330684.3:c.1109G>A	p.Arg370Gln	p.R370Q	ENST00000330684	NM_001134407.1	370	cGg/cAg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40858194	40858194	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs905112048		P-0078984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	137	548	4	ENST00000428826.2:c.1670G>A	p.Arg557His	p.R557H	ENST00000428826		557	cGt/cAt																																																																															
E2F3	1871	MSKCC	GRCh37	6	20481463	20481463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	143	587	2	ENST00000346618.3:c.532C>T	p.Arg178Trp	p.R178W	ENST00000346618	NM_001949.4	178	Cgg/Tgg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349232	89349232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	137	724	0	ENST00000301030.4:c.3718G>A	p.Glu1240Lys	p.E1240K	ENST00000301030	NM_001256183.1	1240	Gag/Aag																																																																															
TP63	8626	MSKCC	GRCh37	3	189526181	189526181	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	136	1039	0	ENST00000264731.3:c.445T>C	p.Tyr149His	p.Y149H	ENST00000264731	NM_003722.4	149	Tac/Cac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151880220	151880221	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0078984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	183	390	0	ENST00000262189.6:c.5103_5104del	p.Arg1701SerfsTer6	p.R1701Sfs*6	ENST00000262189	NM_170606.2	1701	agAGct/agct																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40451767	40451767	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0078984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	137	877	0	ENST00000345506.4:c.551-2A>T		p.X184_splice	ENST00000345506	NM_003152.3	184																																																																																
PMS2	5395	MSKCC	GRCh37	7	6027008	6027008	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	80	290	0	ENST00000265849.7:c.1388C>T	p.Ser463Phe	p.S463F	ENST00000265849	NM_000535.5	463	tCt/tTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604696	48604739	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAGGCTGGGGACCGGATTACCCAAGACAGAGCATCAAAGAAA	GAAAGGCTGGGGACCGGATTACCCAAGACAGAGCATCAAAGAAA	-			P-0078984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	116	651	0	ENST00000342988.3:c.1518_1561del	p.Lys507ThrfsTer5	p.K507Tfs*5	ENST00000342988	NM_005359.5	506	gtGAAAGGCTGGGGACCGGATTACCCAAGACAGAGCATCAAAGAAAca/gtca																																																																															
TP53	7157	MSKCC	GRCh37	17	7576895	7576896	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGG			P-0078984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	267	801	0	ENST00000269305.4:c.947_950dup	p.Gln317HisfsTer21	p.Q317Hfs*21	ENST00000269305	NM_001126112.2	317	cag/caCCCAg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0007764-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			245	170	624	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007764-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			51	456	458	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0007764-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			27	505	304	0	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15989691	15989691	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007764-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			80	488	557	0	ENST00000268712.3:c.3082C>T	p.Arg1028Ter	p.R1028*	ENST00000268712	NM_006311.3	1028	Cga/Tga																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs539507291		P-0007764-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			649	309	593	0	ENST00000257555.6:c.862G>A	p.Gly288Arg	p.G288R	ENST00000257555		288	Ggg/Agg																																																																															
APC	324	MSKCC	GRCh37	5	112174231	112174232	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007764-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			128	59	535	0	ENST00000257430.4:c.2943dup	p.Ser982LeufsTer3	p.S982Lfs*3	ENST00000257430	NM_000038.5	980	-/C																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041245	29041245	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007764-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			633	92	497	0	ENST00000282397.4:c.183G>T	p.Trp61Cys	p.W61C	ENST00000282397	NM_002019.4	61	tgG/tgT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374772	118374772	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007764-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	74	552	0	ENST00000534358.1:c.8165G>T	p.Gly2722Val	p.G2722V	ENST00000534358	NM_005933.3	2722	gGt/gTt																																																																															
NADK	65220	MSKCC	GRCh37	1	1688567	1688568	+	intron_variant	Intron	INS	-	-	C	rs746550458		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			483	31	551	0	ENST00000341426.5:c.393+52dup		p.*131*	ENST00000341426	NM_023018.4																																																																																	
MTOR	2475	MSKCC	GRCh37	1	11300384	11300384	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			367	102	532	0	ENST00000361445.4:c.1762A>G	p.Thr588Ala	p.T588A	ENST00000361445	NM_004958.3	588	Acg/Gcg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11300522	11300522	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			557	40	665	0	ENST00000361445.4:c.1624del	p.Met542CysfsTer58	p.M542Cfs*58	ENST00000361445	NM_004958.3	542	Atg/tg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36938263	36938263	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138558210		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			384	129	621	0	ENST00000361632.4:c.698G>A	p.Arg233Gln	p.R233Q	ENST00000361632		233	cGg/cAg																																																																															
IL10	3586	MSKCC	GRCh37	1	206944310	206944310	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755490123		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			565	61	684	0	ENST00000423557.1:c.320C>T	p.Ala107Val	p.A107V	ENST00000423557	NM_000572.2	107	gCg/gTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			340	111	670	6	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710595	114710597	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs754968616		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	184	526	0	ENST00000543371.1:c.85_87del	p.Glu29del	p.E29del	ENST00000543371	NM_001198531.1	27	cAGGag/cag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137785	64137785	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779751342		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			378	136	673	0	ENST00000334205.4:c.1886G>A	p.Arg629His	p.R629H	ENST00000334205	NM_003942.2	629	cGc/cAc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			469	56	699	2	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941049	71941049	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373511105		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			505	188	799	0	ENST00000298229.2:c.925G>A	p.Val309Met	p.V309M	ENST00000298229	NM_001567.3	309	Gtg/Atg																																																																															
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	54	321	0	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																															
ATM	472	MSKCC	GRCh37	11	108196879	108196880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs773570504		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			429	34	415	0	ENST00000278616.4:c.6908dup	p.Glu2304GlyfsTer69	p.E2304Gfs*69	ENST00000278616	NM_000051.3	2301	gca/gcAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			521	221	660	2	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
CCND2	894	MSKCC	GRCh37	12	4409146	4409146	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587777621		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			429	172	514	0	ENST00000261254.3:c.841C>T	p.Pro281Ser	p.P281S	ENST00000261254	NM_001759.3	281	Cct/Tct																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18439827	18439827	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	118	339	0	ENST00000266497.5:c.725A>T	p.Asn242Ile	p.N242I	ENST00000266497		242	aAt/aTt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			493	41	459	5	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			415	98	565	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111884625	111884625	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			529	44	621	0	ENST00000341259.2:c.801G>T	p.Glu267Asp	p.E267D	ENST00000341259	NM_005475.2	267	gaG/gaT																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562483	21562488	+	inframe_deletion	In_Frame_Del	DEL	GGGGCG	GGGGCG	-	rs779274889		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			174	38	400	0	ENST00000382592.4:c.1431_1436del	p.Pro479_Ala480del	p.P479_A480del	ENST00000382592	NM_014572.2	477	ccCGCCCCg/ccg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133898	41133898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			445	69	596	0	ENST00000379561.5:c.1730del	p.Gly577AlafsTer5	p.G577Afs*5	ENST00000379561	NM_002015.3	577	gGc/gc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061168	38061168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			291	128	586	0	ENST00000250448.2:c.821C>T	p.Ala274Val	p.A274V	ENST00000250448	NM_004496.3	274	gCc/gTc																																																																															
USP8	9101	MSKCC	GRCh37	15	50763941	50763941	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1161410933		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			402	62	411	0	ENST00000307179.4:c.798A>C	p.Lys266Asn	p.K266N	ENST00000307179		266	aaA/aaC																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88669547	88669547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56394626		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			329	109	428	0	ENST00000360948.2:c.1351G>A	p.Val451Ile	p.V451I	ENST00000360948	NM_001012338.2	451	Gtc/Atc																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			450	180	495	6	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23632769	23632770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			298	88	375	0	ENST00000261584.4:c.3026dup	p.Glu1010Ter	p.E1010*	ENST00000261584	NM_024675.3	1009	cct/ccCt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646980	23646981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1060502767		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			492	75	458	0	ENST00000261584.4:c.886dup	p.Met296AsnfsTer7	p.M296Nfs*7	ENST00000261584	NM_024675.3	296	atg/aAtg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828335	72828335	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774192226		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			514	69	654	0	ENST00000268489.5:c.8246C>T	p.Ala2749Val	p.A2749V	ENST00000268489	NM_006885.3	2749	gCg/gTg																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33445587	33445587	+	intron_variant	Intron	SNP	C	C	T	rs56026142		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			361	144	540	1	ENST00000335858.7:c.144+543G>A		p.*48*	ENST00000335858	NM_133629.2																																																																																	
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			447	142	860	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436028	56436028	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			455	171	748	0	ENST00000407977.2:c.1109del	p.Pro370HisfsTer49	p.P370Hfs*49	ENST00000407977		370	cCa/ca																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119750	70119751	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			251	97	417	0	ENST00000245479.2:c.754dup	p.Leu252ProfsTer44	p.L252Pfs*44	ENST00000245479	NM_000346.3	251	gac/gaCc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217055	2217055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			374	60	573	0	ENST00000398665.3:c.2510C>T	p.Ala837Val	p.A837V	ENST00000398665	NM_032482.2	837	gCc/gTc																																																																															
INSR	3643	MSKCC	GRCh37	19	7125379	7125379	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778982272		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			422	144	682	0	ENST00000302850.5:c.3173C>T	p.Thr1058Met	p.T1058M	ENST00000302850	NM_000208.2	1058	aCg/aTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281310	15281310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			473	88	708	1	ENST00000263388.2:c.4946C>T	p.Ala1649Val	p.A1649V	ENST00000263388	NM_000435.2	1649	gCg/gTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290919	15290919	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			430	119	632	1	ENST00000263388.2:c.3291del	p.Thr1098ProfsTer174	p.T1098Pfs*174	ENST00000263388	NM_000435.2	1097	ggG/gg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953860	17953860	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746488415		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			374	137	647	0	ENST00000458235.1:c.542C>T	p.Pro181Leu	p.P181L	ENST00000458235	NM_000215.3	181	cCg/cTg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976954	18976954	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			449	68	592	0	ENST00000262803.5:c.3342del	p.Leu1115CysfsTer12	p.L1115Cfs*12	ENST00000262803	NM_002911.3	1113	acG/ac																																																																															
AXL	558	MSKCC	GRCh37	19	41725323	41725323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			308	130	519	0	ENST00000301178.4:c.26G>A	p.Gly9Asp	p.G9D	ENST00000301178	NM_021913.4	9	gGc/gAc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905094	50905094	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs864622753		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	107	585	0	ENST00000440232.2:c.376C>T	p.Arg126Cys	p.R126C	ENST00000440232	NM_002691.3	126	Cgc/Tgc																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631423	67631424	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	55	400	0	ENST00000272342.5:c.1609_1610insC	p.Ile537ThrfsTer7	p.I537Tfs*7	ENST00000272342	NM_019002.3	537	att/aCtt																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631430	67631430	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	60	406	0	ENST00000272342.5:c.1616A>T	p.Asn539Ile	p.N539I	ENST00000272342	NM_019002.3	539	aAt/aTt																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631523	67631523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	151	456	0	ENST00000272342.5:c.1709C>T	p.Ala570Val	p.A570V	ENST00000272342	NM_019002.3	570	gCa/gTa																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128038192	128038193	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			502	27	455	0	ENST00000285398.2:c.1357dup	p.Arg453LysfsTer11	p.R453Kfs*11	ENST00000285398	NM_000122.1	453	agg/aAgg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661632	227661632	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893642		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			392	62	796	0	ENST00000305123.5:c.1823C>T	p.Thr608Met	p.T608M	ENST00000305123	NM_005544.2	608	aCg/aTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023474	31023474	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376074119		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			482	72	540	0	ENST00000375687.4:c.2959G>A	p.Gly987Arg	p.G987R	ENST00000375687	NM_015338.5	987	Gga/Aga																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31393157	31393157	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			332	139	489	0	ENST00000328111.2:c.2245T>C	p.Ser749Pro	p.S749P	ENST00000328111	NM_006892.3	749	Tca/Cca																																																																															
TOP1	7150	MSKCC	GRCh37	20	39728813	39728813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	122	466	0	ENST00000361337.2:c.1093G>A	p.Gly365Ser	p.G365S	ENST00000361337	NM_003286.2	365	Ggc/Agc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42860342	42860342	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779659161		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	164	523	0	ENST00000398585.3:c.535G>A	p.Gly179Arg	p.G179R	ENST00000398585	NM_001135099.1	179	Ggg/Agg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21336681	21336681	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1366986114		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			364	117	620	2	ENST00000215739.8:c.27del	p.Gln10ArgfsTer15	p.Q10Rfs*15	ENST00000215739	NM_006767.3	7	acG/ac																																																																															
EP300	2033	MSKCC	GRCh37	22	41565563	41565563	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	66	338	0	ENST00000263253.7:c.4229G>T	p.Arg1410Met	p.R1410M	ENST00000263253	NM_001429.3	1410	aGg/aTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41573882	41573882	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758996869		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			407	181	701	0	ENST00000263253.7:c.6167G>A	p.Arg2056Gln	p.R2056Q	ENST00000263253	NM_001429.3	2056	cGg/cAg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			277	297	492	18	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73047305	73047305	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			369	122	349	0	ENST00000356692.5:c.112A>G	p.Thr38Ala	p.T38A	ENST00000356692		38	Aca/Gca																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204623	128204623	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	147	669	1	ENST00000341105.2:c.818del	p.Gly273AspfsTer53	p.G273Dfs*53	ENST00000341105	NM_032638.4	273	gGa/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			478	28	465	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP63	8626	MSKCC	GRCh37	3	189586473	189586473	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			434	159	537	0	ENST00000264731.3:c.1097A>G	p.Asp366Gly	p.D366G	ENST00000264731	NM_003722.4	366	gAc/gGc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801038	1801038	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1444898156		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			297	135	588	0	ENST00000260795.2:c.167C>T	p.Ala56Val	p.A56V	ENST00000260795		56	gCt/gTt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902779	1902779	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs140401180		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	169	595	0	ENST00000382895.3:c.398T>C	p.Met133Thr	p.M133T	ENST00000382895	NM_133330.2	133	aTg/aCg																																																																															
TET2	54790	MSKCC	GRCh37	4	106157335	106157335	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	156	538	0	ENST00000380013.4:c.2236C>G	p.Gln746Glu	p.Q746E	ENST00000380013	NM_001127208.2	746	Caa/Gaa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			242	256	331	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112178357	112178357	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			390	152	548	0	ENST00000257430.4:c.7066A>C	p.Thr2356Pro	p.T2356P	ENST00000257430	NM_000038.5	2356	Act/Cct																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs758740142		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			276	100	259	3	ENST00000265335.6:c.2801del	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023045	150023045	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1175780468		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			398	140	488	0	ENST00000253339.5:c.218C>T	p.Thr73Met	p.T73M	ENST00000253339		73	aCg/aTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962331	2962331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	35	437	0	ENST00000396946.4:c.2206G>T	p.Ala736Ser	p.A736S	ENST00000396946	NM_032415.4	736	Gcc/Tcc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			387	39	489	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508425	106508425	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754761135		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			273	113	535	0	ENST00000359195.3:c.419G>A	p.Arg140Gln	p.R140Q	ENST00000359195	NM_002649.2	140	cGg/cAg																																																																															
MET	4233	MSKCC	GRCh37	7	116339709	116339709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs530932258		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			507	41	568	0	ENST00000397752.3:c.571C>T	p.Arg191Trp	p.R191W	ENST00000397752	NM_000245.2	191	Cgg/Tgg																																																																															
MET	4233	MSKCC	GRCh37	7	116395569	116395569	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs375951814		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	115	342	0	ENST00000397752.3:c.1862C>T	p.Thr621Ile	p.T621I	ENST00000397752	NM_000245.2	621	aCa/aTa																																																																															
SMO	6608	MSKCC	GRCh37	7	128829015	128829015	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs981209235		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			147	18	422	0	ENST00000249373.3:c.23G>A	p.Arg8Gln	p.R8Q	ENST00000249373	NM_005631.4	8	cGg/cAg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			330	155	369	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151843774	151843775	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			403	136	475	0	ENST00000262189.6:c.13940dup	p.Ser4648ValfsTer2	p.S4648Vfs*2	ENST00000262189	NM_170606.2	4647	aag/aaAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878730	151878730	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1292477105		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	168	586	0	ENST00000262189.6:c.6215A>G	p.Tyr2072Cys	p.Y2072C	ENST00000262189	NM_170606.2	2072	tAt/tGt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372193	55372193	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753081636		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			298	151	695	0	ENST00000297316.4:c.883G>A	p.Val295Met	p.V295M	ENST00000297316	NM_022454.3	295	Gtg/Atg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2047418	2047418	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1315212101		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	101	452	0	ENST00000349721.2:c.980G>A	p.Arg327His	p.R327H	ENST00000349721	NM_003070.3	327	cGc/cAc																																																																															
PAX5	5079	MSKCC	GRCh37	9	37033998	37033999	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			289	112	328	0	ENST00000358127.4:c.30_31del	p.Arg11AspfsTer63	p.R11Dfs*63	ENST00000358127	NM_001280556.1	10	ccTCgg/ccgg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			384	123	647	2	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
ABL1	25	MSKCC	GRCh37	9	133759406	133759406	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1371645607		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			417	35	546	0	ENST00000318560.5:c.1729C>T	p.Arg577Ter	p.R577*	ENST00000318560	NM_005157.4	577	Cga/Tga																																																																															
RXRA	6256	MSKCC	GRCh37	9	137325960	137325960	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	144	572	0	ENST00000481739.1:c.1148T>G	p.Leu383Arg	p.L383R	ENST00000481739	NM_002957.4	383	cTc/cGc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399832	139399833	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			383	141	730	0	ENST00000277541.6:c.4515_4516del	p.Cys1505Ter	p.C1505*	ENST00000277541	NM_017617.3	1505	tgTGac/tgac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933497	39933497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			414	183	732	0	ENST00000378444.4:c.1102C>T	p.Pro368Ser	p.P368S	ENST00000378444	NM_001123385.1	368	Cct/Tct																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			576	60	768	0	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411062	63411062	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	122	607	0	ENST00000330258.3:c.2105A>G	p.Glu702Gly	p.E702G	ENST00000330258	NM_152424.3	702	gAg/gGg																																																																															
AR	367	MSKCC	GRCh37	X	66937379	66937379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			405	29	536	0	ENST00000374690.3:c.2233C>T	p.Leu745Phe	p.L745F	ENST00000374690	NM_000044.3	745	Ctc/Ttc																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			197	40	412	0	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910715	29910716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019887-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			594	79	780	1	ENST00000376809.5:c.255_256insG	p.Gln86AlafsTer13	p.Q86Afs*13	ENST00000376809	NM_002116.7	85	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0041715-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			522	116	682	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0041715-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			644	111	840	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0041715-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			400	39	461	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206653437	206653437	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782340929		P-0041715-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			558	59	742	1	ENST00000367120.3:c.1321C>T	p.Arg441Trp	p.R441W	ENST00000367120	NM_014002.3	441	Cgg/Tgg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18691191	18691191	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774205366		P-0041715-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			452	154	588	0	ENST00000266497.5:c.3302G>A	p.Arg1101His	p.R1101H	ENST00000266497		1101	cGt/cAt																																																																															
CDH1	999	MSKCC	GRCh37	16	68853328	68853328	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs786202290		P-0041715-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			544	44	633	0	ENST00000261769.5:c.1711G>A	p.Gly571Ser	p.G571S	ENST00000261769	NM_004360.3	571	Ggt/Agt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844722	156844722	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs986498490		P-0041715-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			851	72	1055	0	ENST00000524377.1:c.1276G>A	p.Val426Ile	p.V426I	ENST00000524377	NM_002529.3	426	Gtc/Atc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0041715-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			419	122	432	1	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223053	5223053	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041715-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			693	70	1053	0	ENST00000357368.4:c.2750C>A	p.Ala917Glu	p.A917E	ENST00000357368	NM_002850.3	917	gCa/gAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591891	48591891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912581		P-0042102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	117	323	0	ENST00000342988.3:c.1054G>A	p.Gly352Arg	p.G352R	ENST00000342988	NM_005359.5	352	Gga/Aga																																																																															
AXL	558	MSKCC	GRCh37	19	41743939	41743939	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1160421475		P-0042102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	78	709	0	ENST00000301178.4:c.874C>A	p.His292Asn	p.H292N	ENST00000301178	NM_021913.4	292	Cat/Aat																																																																															
AR	367	MSKCC	GRCh37	X	66937345	66937345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	45	416	0	ENST00000374690.3:c.2199C>A	p.Asp733Glu	p.D733E	ENST00000374690	NM_000044.3	733	gaC/gaA																																																																															
POLE	5426	MSKCC	GRCh37	12	133241895	133241895	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1483635586		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	140	440	0	ENST00000320574.5:c.2461C>T	p.Arg821Cys	p.R821C	ENST00000320574	NM_006231.2	821	Cgc/Tgc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	157	468	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	68	323	4	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45860928	45860928	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143710107		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	165	464	0	ENST00000391945.4:c.1267G>A	p.Asp423Asn	p.D423N	ENST00000391945	NM_000400.3	423	Gac/Aac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276316	15276316	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372834264		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	141	441	0	ENST00000263388.2:c.5678G>A	p.Arg1893Gln	p.R1893Q	ENST00000263388	NM_000435.2	1893	cGa/cAa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207066	1207066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	162	452	0	ENST00000326873.7:c.154G>A	p.Gly52Arg	p.G52R	ENST00000326873	NM_000455.4	52	Ggg/Agg																																																																															
SDHB	6390	MSKCC	GRCh37	1	17371320	17371320	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs74315370		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	139	312	0	ENST00000375499.3:c.136C>T	p.Arg46Ter	p.R46*	ENST00000375499	NM_003000.2	46	Cga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259374	89259374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141287594		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	121	423	0	ENST00000336596.2:c.518C>T	p.Pro173Leu	p.P173L	ENST00000336596	NM_005233.5	173	cCt/cTt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589168	67589168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	48	340	0	ENST00000274335.5:c.1156C>T	p.Arg386Ter	p.R386*	ENST00000274335		386	Cga/Tga																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	141	579	1	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911534	101911534	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111426349		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	87	304	0	ENST00000374994.4:c.1459C>T	p.Arg487Trp	p.R487W	ENST00000374994	NM_004612.2	487	Cgg/Tgg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534451	63534451	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs8081536		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	170	474	0	ENST00000307078.5:c.1070G>A	p.Arg357His	p.R357H	ENST00000307078	NM_004655.3	357	cGc/cAc																																																																															
BCL6	604	MSKCC	GRCh37	3	187443345	187443345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	162	464	0	ENST00000232014.4:c.1781G>A	p.Arg594Gln	p.R594Q	ENST00000232014	NM_001130845.1	594	cGa/cAa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038902	12038902	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs724159945		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	137	352	0	ENST00000396373.4:c.1195C>T	p.Arg399Cys	p.R399C	ENST00000396373	NM_001987.4	399	Cgc/Tgc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244091	153244091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	166	436	0	ENST00000281708.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000281708	NM_033632.3	689	cGg/cAg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274159	10274159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	111	359	0	ENST00000330684.3:c.110C>T	p.Ala37Val	p.A37V	ENST00000330684	NM_001134407.1	37	gCg/gTg																																																																															
AKT1	207	MSKCC	GRCh37	14	105243045	105243045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	143	458	0	ENST00000349310.3:c.238T>C	p.Trp80Arg	p.W80R	ENST00000349310	NM_001014432.1	80	Tgg/Cgg																																																																															
EED	8726	MSKCC	GRCh37	11	85979574	85979574	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1301151502		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	63	247	0	ENST00000263360.6:c.937C>T	p.Arg313Ter	p.R313*	ENST00000263360	NM_003797.3	313	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371524413		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	164	546	0	ENST00000269305.4:c.467G>A	p.Arg156His	p.R156H	ENST00000269305	NM_001126112.2	156	cGc/cAc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149450022	149450022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	118	389	0	ENST00000286301.3:c.1195C>T	p.Arg399Ter	p.R399*	ENST00000286301	NM_005211.3	399	Cga/Tga																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737702	145737702	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137853232		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	44	580	1	ENST00000428558.2:c.3061C>T	p.Arg1021Trp	p.R1021W	ENST00000428558	NM_004260.3	1021	Cgg/Tgg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085972	16085972	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs998174759		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	156	412	1	ENST00000281043.3:c.1148G>A	p.Arg383His	p.R383H	ENST00000281043	NM_005378.4	383	cGc/cAc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52725412	52725412	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770194852		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	128	478	0	ENST00000322088.6:c.1579C>T	p.Arg527Cys	p.R527C	ENST00000322088	NM_014225.5	527	Cgc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827886	40827886	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201911869		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	150	375	0	ENST00000373198.4:c.2542G>A	p.Gly848Arg	p.G848R	ENST00000373198	NM_133170.3	848	Gga/Aga																																																																															
ABL1	25	MSKCC	GRCh37	9	133761036	133761036	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1456042173		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	110	400	0	ENST00000318560.5:c.3359C>T	p.Ser1120Leu	p.S1120L	ENST00000318560	NM_005157.4	1120	tCg/tTg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552909	106552909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	186	482	0	ENST00000369096.4:c.874C>T	p.Pro292Ser	p.P292S	ENST00000369096	NM_001198.3	292	Ccc/Tcc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14020582	14020582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	69	299	0	ENST00000311895.7:c.553C>T	p.Leu185Phe	p.L185F	ENST00000311895	NM_005236.2	185	Ctt/Ttt																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804267	46804267	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767502912		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	144	412	0	ENST00000290295.7:c.740G>A	p.Arg247His	p.R247H	ENST00000290295	NM_006361.5	247	cGc/cAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67593424	67593424	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs764019194		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	133	331	0	ENST00000274335.5:c.2170C>T	p.Arg724Ter	p.R724*	ENST00000274335		724	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911520	134911520	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756316035		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	146	446	0	ENST00000398015.3:c.1985G>A	p.Arg662His	p.R662H	ENST00000398015	NM_004441.4	662	cGt/cAt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185184657	185184657	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs56408536		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	129	380	0	ENST00000265026.3:c.1549C>T	p.Arg517Ter	p.R517*	ENST00000265026	NM_004721.4	517	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099430	27099430	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1227227387		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	134	439	0	ENST00000324856.7:c.3667C>T	p.Arg1223Cys	p.R1223C	ENST00000324856	NM_006015.4	1223	Cgc/Tgc																																																																															
AKT1	207	MSKCC	GRCh37	14	105240286	105240286	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369698909		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	109	348	0	ENST00000349310.3:c.665G>A	p.Arg222His	p.R222H	ENST00000349310	NM_001014432.1	222	cGc/cAc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473648	67473648	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223736		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	149	375	0	ENST00000327367.4:c.728G>A	p.Arg243His	p.R243H	ENST00000327367	NM_005902.3	243	cGc/cAc																																																																															
PARP1	142	MSKCC	GRCh37	1	226567646	226567647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1159330096		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	160	475	0	ENST00000366794.5:c.1519dup	p.Ser507LysfsTer14	p.S507Kfs*14	ENST00000366794	NM_001618.3	507	agc/aAgc																																																																															
RHOA	387	MSKCC	GRCh37	3	49412946	49412946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	141	409	1	ENST00000418115.1:c.77G>A	p.Ser26Asn	p.S26N	ENST00000418115	NM_001664.2	26	aGc/aAc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38982073	38982073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	65	377	0	ENST00000357387.3:c.649G>A	p.Asp217Asn	p.D217N	ENST00000357387	NM_152756.3	217	Gat/Aat																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166773	32166773	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1231739465		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	146	387	0	ENST00000375023.3:c.4465C>T	p.Arg1489Ter	p.R1489*	ENST00000375023	NM_004557.3	1489	Cga/Tga																																																																															
RARA	5914	MSKCC	GRCh37	17	38511611	38511611	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs899025600		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	163	411	0	ENST00000254066.5:c.1109G>A	p.Arg370His	p.R370H	ENST00000254066	NM_000964.3	370	cGc/cAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162123	47162123	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1216047088		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	96	371	0	ENST00000409792.3:c.4003C>T	p.Arg1335Cys	p.R1335C	ENST00000409792	NM_014159.6	1335	Cgt/Tgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713407	40713407	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768298187		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	142	523	0	ENST00000373198.4:c.4108C>T	p.Arg1370Cys	p.R1370C	ENST00000373198	NM_133170.3	1370	Cgc/Tgc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033396	48033396	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	52	298	0	ENST00000234420.5:c.3700G>T	p.Glu1234Ter	p.E1234*	ENST00000234420	NM_000179.2	1234	Gaa/Taa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913692	32913692	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786202543		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	58	323	0	ENST00000380152.3:c.5200G>A	p.Glu1734Lys	p.E1734K	ENST00000380152		1734	Gaa/Aaa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740416	58740416	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777279856		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	106	406	0	ENST00000305921.3:c.1321C>T	p.Arg441Cys	p.R441C	ENST00000305921	NM_003620.3	441	Cgt/Tgt																																																																															
MET	4233	MSKCC	GRCh37	7	116340097	116340097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35776110		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	20	367	0	ENST00000397752.3:c.959C>T	p.Ala320Val	p.A320V	ENST00000397752	NM_000245.2	320	gCg/gTg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2116002	2116002	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs281875238		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	129	389	0	ENST00000349721.2:c.3637C>T	p.Arg1213Trp	p.R1213W	ENST00000349721	NM_003070.3	1213	Cgg/Tgg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779578	3779578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	171	474	0	ENST00000262367.5:c.5470G>A	p.Ala1824Thr	p.A1824T	ENST00000262367	NM_004380.2	1824	Gcc/Acc																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006005	22006005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	151	509	0	ENST00000276925.6:c.398G>A	p.Arg133His	p.R133H	ENST00000276925	NM_004936.3	133	cGc/cAc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2983877	2983877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	134	387	0	ENST00000396946.4:c.653C>T	p.Ala218Val	p.A218V	ENST00000396946	NM_032415.4	218	gCg/gTg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308419	30308419	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	96	361	0	ENST00000262643.3:c.433C>T	p.Arg145Ter	p.R145*	ENST00000262643	NM_001238.2	145	Cga/Tga																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285669	46285669	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1368075571		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	113	372	0	ENST00000334344.6:c.5029C>T	p.Arg1677Ter	p.R1677*	ENST00000334344	NM_152641.2	1677	Cga/Tga																																																																															
FLT1	2321	MSKCC	GRCh37	13	28979946	28979946	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764045713		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	45	302	0	ENST00000282397.4:c.1522C>T	p.Arg508Cys	p.R508C	ENST00000282397	NM_002019.4	508	Cgc/Tgc																																																																															
SRC	6714	MSKCC	GRCh37	20	36022656	36022656	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143889833		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	170	388	0	ENST00000358208.4:c.529G>A	p.Val177Met	p.V177M	ENST00000358208		177	Gtg/Atg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41276095	41276095	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80356994		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	59	272	0	ENST00000357654.3:c.19C>T	p.Arg7Cys	p.R7C	ENST00000357654	NM_007294.3	7	Cgc/Tgc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429758	78429758	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	66	342	0	ENST00000370768.2:c.1030C>T	p.Arg344Ter	p.R344*	ENST00000370768	NM_003902.3	344	Cga/Tga																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793386	242793386	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs756100729		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	147	511	0	ENST00000334409.5:c.691C>T	p.Arg231Ter	p.R231*	ENST00000334409	NM_005018.2	231	Cga/Tga																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750454	57750454	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	95	383	0	ENST00000274289.3:c.2014C>T	p.Arg672Ter	p.R672*	ENST00000274289	NM_006622.3	672	Cga/Tga																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81939065	81939065	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867345397		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	126	397	0	ENST00000359376.3:c.1420G>A	p.Glu474Lys	p.E474K	ENST00000359376	NM_002661.3	474	Gaa/Aaa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348223	348223	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755028316		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	185	472	1	ENST00000262320.3:c.1283C>T	p.Ser428Leu	p.S428L	ENST00000262320	NM_003502.3	428	tCg/tTg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185181425	185181425	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1435276633		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	91	289	1	ENST00000265026.3:c.1366C>T	p.Arg456Ter	p.R456*	ENST00000265026	NM_004721.4	456	Cga/Tga																																																																															
KIT	3815	MSKCC	GRCh37	4	55595622	55595622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	61	255	0	ENST00000288135.5:c.2112G>T	p.Lys704Asn	p.K704N	ENST00000288135	NM_000222.2	704	aaG/aaT																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552838	106552838	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367766895		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	194	463	0	ENST00000369096.4:c.803G>A	p.Arg268His	p.R268H	ENST00000369096	NM_001198.3	268	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112179788	112179788	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201459013		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	122	427	0	ENST00000257430.4:c.8497C>T	p.Arg2833Cys	p.R2833C	ENST00000257430	NM_000038.5	2833	Cgc/Tgc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37681051	37681051	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	137	393	0	ENST00000447079.4:c.3220A>G	p.Thr1074Ala	p.T1074A	ENST00000447079	NM_015083.1	1074	Aca/Gca																																																																															
ABL1	25	MSKCC	GRCh37	9	133759832	133759832	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145494071		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	111	390	0	ENST00000318560.5:c.2155G>A	p.Ala719Thr	p.A719T	ENST00000318560	NM_005157.4	719	Gcc/Acc																																																																															
ATR	545	MSKCC	GRCh37	3	142268413	142268413	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	65	293	0	ENST00000350721.4:c.3079G>T	p.Glu1027Ter	p.E1027*	ENST00000350721	NM_001184.3	1027	Gag/Tag																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631701	90631701	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1472765685		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	136	529	1	ENST00000330062.3:c.568G>A	p.Gly190Ser	p.G190S	ENST00000330062	NM_002168.2	190	Ggc/Agc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223235	2223235	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773787910		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	183	484	0	ENST00000326181.6:c.847C>T	p.Arg283Cys	p.R283C	ENST00000326181	NM_032271.2	283	Cgc/Tgc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245501	153245501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1024060344		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	87	345	0	ENST00000281708.4:c.1690C>T	p.Arg564Cys	p.R564C	ENST00000281708	NM_033632.3	564	Cgt/Tgt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146656	185146656	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145694468		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	131	373	2	ENST00000265026.3:c.287C>T	p.Ala96Val	p.A96V	ENST00000265026	NM_004721.4	96	gCg/gTg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354308	354308	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757610038		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	165	327	0	ENST00000262320.3:c.1250G>A	p.Arg417His	p.R417H	ENST00000262320	NM_003502.3	417	cGc/cAc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928978	49928978	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs200454353		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	170	500	0	ENST00000296474.3:c.3388C>T	p.Arg1130Ter	p.R1130*	ENST00000296474	NM_002447.2	1130	Cga/Tga																																																																															
UPF1	5976	MSKCC	GRCh37	19	18958620	18958620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	112	276	0	ENST00000262803.5:c.439G>A	p.Gly147Arg	p.G147R	ENST00000262803	NM_002911.3	147	Gga/Aga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100109	27100109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	152	504	0	ENST00000324856.7:c.3905C>T	p.Thr1302Ile	p.T1302I	ENST00000324856	NM_006015.4	1302	aCt/aTt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557912	21557912	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757472527		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	136	334	0	ENST00000382592.4:c.1933C>T	p.Arg645Trp	p.R645W	ENST00000382592	NM_014572.2	645	Cgg/Tgg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458536	12458536	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs780238349		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	153	423	0	ENST00000287820.6:c.1153C>T	p.Arg385Ter	p.R385*	ENST00000287820	NM_015869.4	385	Cga/Tga																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182052	38182052	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1190702008		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	165	495	0	ENST00000396334.3:c.676G>A	p.Glu226Lys	p.E226K	ENST00000396334	NM_002468.4	226	Gaa/Aaa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303035	15303035	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777257132		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	159	508	0	ENST00000263388.2:c.415G>A	p.Asp139Asn	p.D139N	ENST00000263388	NM_000435.2	139	Gat/Aat																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87563419	87563419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	142	391	0	ENST00000277120.3:c.1807C>T	p.Arg603Cys	p.R603C	ENST00000277120		603	Cgt/Tgt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356361	66356361	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772108237		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	25	451	1	ENST00000273854.3:c.1136C>T	p.Pro379Leu	p.P379L	ENST00000273854	NM_004439.5	379	cCg/cTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223345	53223345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	96	191	0	ENST00000375401.3:c.4014G>T	p.Glu1338Asp	p.E1338D	ENST00000375401	NM_004187.3	1338	gaG/gaT																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041084	29041084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	96	347	0	ENST00000282397.4:c.344C>T	p.Ser115Leu	p.S115L	ENST00000282397	NM_002019.4	115	tCa/tTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438018	49438018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs111266743		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	152	425	1	ENST00000301067.7:c.5153C>T	p.Ala1718Val	p.A1718V	ENST00000301067	NM_003482.3	1718	gCg/gTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396277	139396277	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs878855028		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	134	531	2	ENST00000277541.6:c.5561G>A	p.Arg1854His	p.R1854H	ENST00000277541	NM_017617.3	1854	cGc/cAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410472	63410472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	123	266	0	ENST00000330258.3:c.2695G>A	p.Ala899Thr	p.A899T	ENST00000330258	NM_152424.3	899	Gca/Aca																																																																															
ATM	472	MSKCC	GRCh37	11	108188148	108188148	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	62	266	0	ENST00000278616.4:c.6247G>T	p.Gly2083Ter	p.G2083*	ENST00000278616	NM_000051.3	2083	Gga/Tga																																																																															
IDH2	3418	MSKCC	GRCh37	15	90634844	90634844	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201999104		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	142	470	0	ENST00000330062.3:c.148G>A	p.Val50Met	p.V50M	ENST00000330062	NM_002168.2	50	Gtg/Atg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600336	10600336	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs751088754		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	180	467	1	ENST00000171111.5:c.1519C>T	p.Arg507Ter	p.R507*	ENST00000171111	NM_203500.1	507	Cga/Tga																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710693	117710693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	132	439	0	ENST00000368508.3:c.1579G>A	p.Glu527Lys	p.E527K	ENST00000368508	NM_002944.2	527	Gaa/Aaa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67660507	67660507	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	107	284	0	ENST00000264010.4:c.1407C>A	p.Cys469Ter	p.C469*	ENST00000264010	NM_006565.3	469	tgC/tgA																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25964903	25964903	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs561088610		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	144	410	0	ENST00000435504.4:c.4303C>T	p.Arg1435Trp	p.R1435W	ENST00000435504		1435	Cgg/Tgg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185183551	185183551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	128	273	0	ENST00000265026.3:c.1405C>T	p.Arg469Cys	p.R469C	ENST00000265026	NM_004721.4	469	Cgt/Tgt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15383903	15383903	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1324868843		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	135	369	0	ENST00000263377.2:c.8C>T	p.Ala3Val	p.A3V	ENST00000263377	NM_058243.2	3	gCg/gTg																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99808246	99808246	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776434815		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	53	248	0	ENST00000280892.6:c.443G>A	p.Arg148His	p.R148H	ENST00000280892	NM_001130678.1	148	cGc/cAc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21620051	21620051	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750829854		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	183	407	0	ENST00000382592.4:c.115G>A	p.Ala39Thr	p.A39T	ENST00000382592	NM_014572.2	39	Gca/Aca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55214367	55214367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778252		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	137	431	0	ENST00000275493.2:c.493C>T	p.Arg165Trp	p.R165W	ENST00000275493	NM_005228.3	165	Cgg/Tgg																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152357789	152357789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	61	217	0	ENST00000359321.1:c.118C>T	p.His40Tyr	p.H40Y	ENST00000359321	NM_005431.1	40	Cat/Tat																																																																															
SOS1	6654	MSKCC	GRCh37	2	39249728	39249728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	87	277	0	ENST00000402219.2:c.1841C>T	p.Thr614Met	p.T614M	ENST00000402219	NM_005633.3	614	aCg/aTg																																																																															
ETV6	2120	MSKCC	GRCh37	12	11905505	11905505	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774396176		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	146	353	0	ENST00000396373.4:c.155C>T	p.Ala52Val	p.A52V	ENST00000396373	NM_001987.4	52	gCg/gTg																																																																															
CBL	867	MSKCC	GRCh37	11	119168162	119168162	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763213265		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	82	342	0	ENST00000264033.4:c.2222C>T	p.Ala741Val	p.A741V	ENST00000264033	NM_005188.3	741	gCg/gTg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117861199	117861199	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	67	273	0	ENST00000297338.2:c.1690C>A	p.Leu564Ile	p.L564I	ENST00000297338	NM_006265.2	564	Ctt/Att																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779728	3779728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	178	436	0	ENST00000262367.5:c.5320C>T	p.Arg1774Cys	p.R1774C	ENST00000262367	NM_004380.2	1774	Cgc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187560908	187560908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	109	328	0	ENST00000441802.2:c.3610G>A	p.Asp1204Asn	p.D1204N	ENST00000441802	NM_005245.3	1204	Gac/Aac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16042482	16042482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	67	248	0	ENST00000268712.3:c.1192C>T	p.Arg398Trp	p.R398W	ENST00000268712	NM_006311.3	398	Cgg/Tgg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739584	145739584	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772515188		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	130	523	0	ENST00000428558.2:c.1867C>T	p.Arg623Cys	p.R623C	ENST00000428558	NM_004260.3	623	Cgc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770575	40770575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1294592345		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	99	394	0	ENST00000373198.4:c.2807G>A	p.Arg936Gln	p.R936Q	ENST00000373198	NM_133170.3	936	cGa/cAa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500576	99500576	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141802822		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	140	519	0	ENST00000268035.6:c.4009C>T	p.Arg1337Cys	p.R1337C	ENST00000268035	NM_000875.3	1337	Cgc/Tgc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190732626	190732626	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139826569		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	60	290	0	ENST00000441310.2:c.2444C>T	p.Ala815Val	p.A815V	ENST00000441310	NM_000534.4	815	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433950	49433950	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780306423		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	151	507	1	ENST00000301067.7:c.7603C>T	p.Arg2535Cys	p.R2535C	ENST00000301067	NM_003482.3	2535	Cgt/Tgt																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38614469	38614469	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	52	251	0	ENST00000299084.4:c.235G>T	p.Asp79Tyr	p.D79Y	ENST00000299084	NM_152594.2	79	Gac/Tac																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14026041	14026041	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750883282		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	75	302	0	ENST00000311895.7:c.1001C>T	p.Ser334Leu	p.S334L	ENST00000311895	NM_005236.2	334	tCg/tTg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39074433	39074433	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	103	355	0	ENST00000357387.3:c.47G>A	p.Arg16Gln	p.R16Q	ENST00000357387	NM_152756.3	16	cGa/cAa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367969	15367969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759001252		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	130	361	1	ENST00000263377.2:c.1357C>T	p.Arg453Cys	p.R453C	ENST00000263377	NM_058243.2	453	Cgc/Tgc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467760	99467760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs150221450		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	126	388	0	ENST00000268035.6:c.2629C>T	p.Arg877Ter	p.R877*	ENST00000268035	NM_000875.3	877	Cga/Tga																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807167	1807167	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751635116		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	157	514	0	ENST00000260795.2:c.1498G>A	p.Ala500Thr	p.A500T	ENST00000260795		500	Gcc/Acc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100645	8100645	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1218595084		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	131	581	0	ENST00000346208.3:c.619G>A	p.Ala207Thr	p.A207T	ENST00000346208		207	Gcc/Acc																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480624	50480624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	148	452	1	ENST00000394963.4:c.494G>A	p.Arg165Gln	p.R165Q	ENST00000394963	NM_003076.4	165	cGg/cAg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31381401	31381401	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs201681031		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	67	205	0	ENST00000328111.2:c.1126G>A	p.Glu376Lys	p.E376K	ENST00000328111	NM_006892.3	376	Gag/Aag																																																																															
CYLD	1540	MSKCC	GRCh37	16	50816324	50816324	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	67	321	0	ENST00000398568.2:c.1764G>T	p.Lys588Asn	p.K588N	ENST00000398568	NM_001042412.1	588	aaG/aaT																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699295	117699295	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773228516		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	133	347	1	ENST00000369458.3:c.346C>T	p.Arg116Trp	p.R116W	ENST00000369458	NM_024626.3	116	Cgg/Tgg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121040	29121040	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876659804		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	78	317	0	ENST00000328354.6:c.517G>A	p.Glu173Lys	p.E173K	ENST00000328354	NM_007194.3	173	Gag/Aag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2977555	2977555	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1349696922		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	70	316	0	ENST00000396946.4:c.1129C>T	p.Arg377Trp	p.R377W	ENST00000396946	NM_032415.4	377	Cgg/Tgg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239981	98239981	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142791675		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	121	282	1	ENST00000331920.6:c.1351G>A	p.Ala451Thr	p.A451T	ENST00000331920	NM_000264.3	451	Gcc/Acc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138055	64138055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	139	410	0	ENST00000334205.4:c.1978G>A	p.Ala660Thr	p.A660T	ENST00000334205	NM_003942.2	660	Gcc/Acc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259270	16259270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774668447		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	160	474	2	ENST00000375759.3:c.6535G>A	p.Ala2179Thr	p.A2179T	ENST00000375759	NM_015001.2	2179	Gca/Aca																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209358	98209358	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1297685477		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	150	458	1	ENST00000331920.6:c.4180C>T	p.Arg1394Ter	p.R1394*	ENST00000331920	NM_000264.3	1394	Cga/Tga																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115268831	115268831	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	63	226	0	ENST00000438362.2:c.1778+1G>A		p.X593_splice	ENST00000438362	NM_001242891.1	593																																																																																
TSHR	7253	MSKCC	GRCh37	14	81609958	81609958	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780018604		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	140	486	0	ENST00000298171.2:c.1556G>A	p.Arg519His	p.R519H	ENST00000298171	NM_000369.2	519	cGc/cAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176719015	176719015	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1321310131		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	146	379	0	ENST00000439151.2:c.6319C>T	p.Arg2107Cys	p.R2107C	ENST00000439151	NM_022455.4	2107	Cgc/Tgc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562133	176562133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	173	420	0	ENST00000439151.2:c.29G>T	p.Arg10Ile	p.R10I	ENST00000439151	NM_022455.4	10	aGa/aTa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877404	28877404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	137	312	0	ENST00000282397.4:c.3917G>T	p.Arg1306Met	p.R1306M	ENST00000282397	NM_002019.4	1306	aGg/aTg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1918616	1918616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	112	305	0	ENST00000382895.3:c.779G>A	p.Arg260His	p.R260H	ENST00000382895	NM_133330.2	260	cGc/cAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033228	69033228	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	94	306	0	ENST00000288368.4:c.3668G>A	p.Trp1223Ter	p.W1223*	ENST00000288368	NM_024870.2	1223	tGg/tAg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99149894	99149894	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368448330		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	114	402	0	ENST00000074304.5:c.206C>T	p.Ala69Val	p.A69V	ENST00000074304	NM_001134224.1	69	gCg/gTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961790	15961790	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762874617		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	111	319	0	ENST00000268712.3:c.6005C>T	p.Ala2002Val	p.A2002V	ENST00000268712	NM_006311.3	2002	gCg/gTg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489573	40489573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	146	455	0	ENST00000264657.5:c.677C>T	p.Ser226Leu	p.S226L	ENST00000264657	NM_139276.2	226	tCa/tTa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118360862	118360862	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781990391		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	122	285	0	ENST00000534358.1:c.4594C>T	p.Arg1532Cys	p.R1532C	ENST00000534358	NM_005933.3	1532	Cgc/Tgc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47677762	47677762	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1380705599		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	149	349	0	ENST00000347630.2:c.1103G>A	p.Arg368His	p.R368H	ENST00000347630	NM_001007230.1	368	cGc/cAc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99154412	99154412	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750703654		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	132	424	0	ENST00000074304.5:c.554G>A	p.Arg185Gln	p.R185Q	ENST00000074304	NM_001134224.1	185	cGg/cAg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49927989	49927989	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374259168		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	158	403	0	ENST00000296474.3:c.3739G>A	p.Ala1247Thr	p.A1247T	ENST00000296474	NM_002447.2	1247	Gct/Act																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436597	110436597	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1267707947		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	114	519	0	ENST00000375856.3:c.1804C>T	p.Arg602Trp	p.R602W	ENST00000375856	NM_003749.2	602	Cgg/Tgg																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519179	137519179	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	61	297	0	ENST00000367739.4:c.1459G>T	p.Glu487Ter	p.E487*	ENST00000367739	NM_000416.2	487	Gaa/Taa																																																																															
UPF1	5976	MSKCC	GRCh37	19	18961631	18961631	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1339234477		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	118	386	0	ENST00000262803.5:c.764G>A	p.Arg255His	p.R255H	ENST00000262803	NM_002911.3	255	cGc/cAc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143326445	143326445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	108	337	0	ENST00000262992.4:c.169C>T	p.Arg57Cys	p.R57C	ENST00000262992	NM_001101669.1	57	Cgt/Tgt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216398	2216398	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749779365		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	157	458	0	ENST00000398665.3:c.2042G>A	p.Arg681His	p.R681H	ENST00000398665	NM_032482.2	681	cGc/cAc																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345989	152345989	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775565256		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	119	413	0	ENST00000359321.1:c.581C>T	p.Thr194Met	p.T194M	ENST00000359321	NM_005431.1	194	aCg/aTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197830	66197830	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373548243		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	48	303	0	ENST00000273854.3:c.2869G>A	p.Ala957Thr	p.A957T	ENST00000273854	NM_004439.5	957	Gca/Aca																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856059	111856059	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1242525317		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	122	416	0	ENST00000341259.2:c.110C>T	p.Ala37Val	p.A37V	ENST00000341259	NM_005475.2	37	gCg/gTg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150931775	150931775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	159	375	0	ENST00000271640.5:c.2452C>T	p.Arg818Cys	p.R818C	ENST00000271640	NM_001145415.1	818	Cgc/Tgc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409980	139409980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	139	494	0	ENST00000277541.6:c.1858G>A	p.Asp620Asn	p.D620N	ENST00000277541	NM_017617.3	620	Gac/Aac																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589518	69589518	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755540122		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	224	740	0	ENST00000168712.1:c.335G>A	p.Arg112His	p.R112H	ENST00000168712	NM_002007.2	112	cGc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258094	16258094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	152	390	0	ENST00000375759.3:c.5359G>A	p.Ala1787Thr	p.A1787T	ENST00000375759	NM_015001.2	1787	Gca/Aca																																																																															
BCL6	604	MSKCC	GRCh37	3	187442757	187442757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	147	404	0	ENST00000232014.4:c.1949G>A	p.Arg650Gln	p.R650Q	ENST00000232014	NM_001130845.1	650	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112176882	112176882	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	103	393	0	ENST00000257430.4:c.5591C>A	p.Ser1864Tyr	p.S1864Y	ENST00000257430	NM_000038.5	1864	tCt/tAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133253157	133253157	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	123	316	0	ENST00000320574.5:c.884T>G	p.Met295Arg	p.M295R	ENST00000320574	NM_006231.2	295	aTg/aGg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647068	23647068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	98	420	0	ENST00000261584.4:c.799C>T	p.Pro267Ser	p.P267S	ENST00000261584	NM_024675.3	267	Cct/Tct																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257875	19257875	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	160	532	0	ENST00000162023.5:c.511C>T	p.Arg171Ter	p.R171*	ENST00000162023		171	Cga/Tga																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194671	29194671	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370779406		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	120	412	0	ENST00000240100.2:c.1057C>T	p.Arg353Trp	p.R353W	ENST00000240100	NM_001394.6	353	Cgg/Tgg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041555	14041555	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762543560		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	103	379	0	ENST00000311895.7:c.2102G>A	p.Arg701His	p.R701H	ENST00000311895	NM_005236.2	701	cGt/cAt																																																																															
EP300	2033	MSKCC	GRCh37	22	41574268	41574268	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	159	417	0	ENST00000263253.7:c.6553C>T	p.Arg2185Ter	p.R2185*	ENST00000263253	NM_001429.3	2185	Cga/Tga																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564440	139564440	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139118330		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	123	381	0	ENST00000308874.7:c.388C>T	p.Arg130Trp	p.R130W	ENST00000308874		130	Cgg/Tgg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201756	66201756	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	127	364	0	ENST00000273854.3:c.2746C>T	p.Gln916Ter	p.Q916*	ENST00000273854	NM_004439.5	916	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540254	187540254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1221380402		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	128	428	1	ENST00000441802.2:c.7486G>A	p.Glu2496Lys	p.E2496K	ENST00000441802	NM_005245.3	2496	Gaa/Aaa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246794	41246794	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs273902786		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	137	334	0	ENST00000357654.3:c.754C>T	p.Arg252Cys	p.R252C	ENST00000357654	NM_007294.3	252	Cgt/Tgt																																																																															
MGA	23269	MSKCC	GRCh37	15	42005482	42005482	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775446234		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	167	474	1	ENST00000219905.7:c.3218G>A	p.Arg1073Gln	p.R1073Q	ENST00000219905	NM_001164273.1	1073	cGa/cAa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971052	21971052	+	synonymous_variant	Silent	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	131	464	0	ENST00000304494.5:c.306G>A	p.Ala102=	p.A102=	ENST00000304494	NM_000077.4	102	gcG/gcA																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63526179	63526179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755508971		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	136	401	0	ENST00000307078.5:c.2447C>T	p.Ala816Val	p.A816V	ENST00000307078	NM_004655.3	816	gCg/gTg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128050412	128050412	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1246605943		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	132	340	0	ENST00000285398.2:c.245G>A	p.Gly82Asp	p.G82D	ENST00000285398	NM_000122.1	82	gGc/gAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970957	21970957	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757497674		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	172	502	1	ENST00000304494.5:c.401C>T	p.Ala134Val	p.A134V	ENST00000304494	NM_000077.4	134	gCg/gTg																																																																															
MET	4233	MSKCC	GRCh37	7	116339238	116339238	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764246939		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	125	406	1	ENST00000397752.3:c.100G>A	p.Glu34Lys	p.E34K	ENST00000397752	NM_000245.2	34	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	45	262	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NADK	65220	MSKCC	GRCh37	1	1684399	1684399	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760542689		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	148	482	0	ENST00000341426.5:c.1285G>A	p.Val429Ile	p.V429I	ENST00000341426	NM_023018.4	429	Gtc/Atc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782585	9782585	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	113	295	0	ENST00000377346.4:c.2348-1G>A		p.X783_splice	ENST00000377346	NM_005026.3	783																																																																																
MTOR	2475	MSKCC	GRCh37	1	11303317	11303317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	127	366	0	ENST00000361445.4:c.1266C>A	p.Ser422Arg	p.S422R	ENST00000361445	NM_004958.3	422	agC/agA																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254678	16254678	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377688121		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	124	423	1	ENST00000375759.3:c.1943G>A	p.Arg648Gln	p.R648Q	ENST00000375759	NM_015001.2	648	cGg/cAg																																																																															
CDC42	998	MSKCC	GRCh37	1	22413300	22413300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	51	114	0	ENST00000344548.3:c.427G>A	p.Glu143Lys	p.E143K	ENST00000344548	NM_001039802.1	143	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057938	27057938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	203	434	0	ENST00000324856.7:c.1646C>T	p.Pro549Leu	p.P549L	ENST00000324856	NM_006015.4	549	cCc/cTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100839	27100839	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1487753987		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	114	400	0	ENST00000324856.7:c.4121A>G	p.Asp1374Gly	p.D1374G	ENST00000324856	NM_006015.4	1374	gAt/gGt																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797166	45797166	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773370513		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	145	502	0	ENST00000372115.3:c.1207C>T	p.Arg403Cys	p.R403C	ENST00000372115	NM_001048171.1	403	Cgc/Tgc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726483	46726483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767399408		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	148	432	0	ENST00000371975.4:c.562G>A	p.Gly188Arg	p.G188R	ENST00000371975	NM_003579.3	188	Gga/Aga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65300267	65300267	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs944229309		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	83	294	0	ENST00000342505.4:c.3443G>T	p.Gly1148Val	p.G1148V	ENST00000342505	NM_002227.2	1148	gGa/gTa																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936017	150936017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	140	432	0	ENST00000271640.5:c.3469C>T	p.Arg1157Cys	p.R1157C	ENST00000271640	NM_001145415.1	1157	Cgt/Tgt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193107285	193107285	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	91	310	0	ENST00000367435.3:c.494T>C	p.Val165Ala	p.V165A	ENST00000367435	NM_024529.4	165	gTa/gCa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981780	201981780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	149	471	0	ENST00000359651.3:c.491C>T	p.Pro164Leu	p.P164L	ENST00000359651		164	cCc/cTc																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612761	228612761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	235	634	0	ENST00000366696.1:c.266C>T	p.Ala89Val	p.A89V	ENST00000366696	NM_003493.2	89	gCc/gTc																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612819	228612819	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761689329		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	239	694	0	ENST00000366696.1:c.208C>T	p.Arg70Trp	p.R70W	ENST00000366696	NM_003493.2	70	Cgg/Tgg																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231474322	231474322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	105	405	0	ENST00000295050.7:c.193G>A	p.Glu65Lys	p.E65K	ENST00000295050	NM_032018.5	65	Gag/Aag																																																																															
FH	2271	MSKCC	GRCh37	1	241675439	241675439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	58	256	0	ENST00000366560.3:c.383C>T	p.Ala128Val	p.A128V	ENST00000366560	NM_000143.3	128	gCt/gTt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851233	63851233	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	140	483	1	ENST00000279873.7:c.2011G>T	p.Gly671Ter	p.G671*	ENST00000279873	NM_032199.2	671	Gga/Tga																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47595284	47595284	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746451387		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	124	339	0	ENST00000395288.2:c.755C>T	p.Ser252Leu	p.S252L	ENST00000395288	NM_016506.5	252	tCg/tTg																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47598986	47598986	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779866095		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	156	435	1	ENST00000395288.2:c.566G>A	p.Arg189His	p.R189H	ENST00000395288	NM_016506.5	189	cGc/cAc																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47599185	47599185	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	115	431	0	ENST00000395288.2:c.367G>T	p.Asp123Tyr	p.D123Y	ENST00000395288	NM_016506.5	123	Gac/Tac																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137768	64137768	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1176040217		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	182	435	0	ENST00000334205.4:c.1869G>T	p.Glu623Asp	p.E623D	ENST00000334205	NM_003942.2	623	gaG/gaT																																																																															
CCND1	595	MSKCC	GRCh37	11	69458599	69458599	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	101	315	0	ENST00000227507.2:c.415-1G>A		p.X139_splice	ENST00000227507	NM_053056.2	139																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71941484	71941484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762820798		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	167	532	0	ENST00000298229.2:c.1169G>A	p.Arg390His	p.R390H	ENST00000298229	NM_001567.3	390	cGc/cAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948509	71948509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	135	524	0	ENST00000298229.2:c.3221G>A	p.Gly1074Glu	p.G1074E	ENST00000298229	NM_001567.3	1074	gGg/gAg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77034329	77034329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	170	450	0	ENST00000356341.3:c.1628A>G	p.Asn543Ser	p.N543S	ENST00000356341	NM_002576.4	543	aAc/aGc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77054972	77054972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	105	324	2	ENST00000356341.3:c.890C>T	p.Ala297Val	p.A297V	ENST00000356341	NM_002576.4	297	gCc/gTc																																																																															
EED	8726	MSKCC	GRCh37	11	85963281	85963281	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	50	257	0	ENST00000263360.6:c.359G>A	p.Arg120Lys	p.R120K	ENST00000263360	NM_003797.3	120	aGa/aAa																																																																															
PGR	5241	MSKCC	GRCh37	11	100999389	100999389	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755905259		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	135	525	0	ENST00000325455.5:c.413G>A	p.Ser138Asn	p.S138N	ENST00000325455	NM_001202474.3	138	aGc/aAc																																																																															
ATM	472	MSKCC	GRCh37	11	108172509	108172509	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	55	299	0	ENST00000278616.4:c.5312G>T	p.Arg1771Ile	p.R1771I	ENST00000278616	NM_000051.3	1771	aGa/aTa																																																																															
ATM	472	MSKCC	GRCh37	11	108186596	108186596	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs755694394		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	86	362	0	ENST00000278616.4:c.6053T>G	p.Leu2018Trp	p.L2018W	ENST00000278616	NM_000051.3	2018	tTg/tGg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	495106	495107	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	74	264	0	ENST00000399788.2:c.199dup	p.Ser67LysfsTer13	p.S67Kfs*13	ENST00000399788	NM_001042603.1	67	agc/aAgc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	495113	495113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	81	272	0	ENST00000399788.2:c.193G>A	p.Val65Ile	p.V65I	ENST00000399788	NM_001042603.1	65	Gta/Ata																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18762562	18762562	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	40	232	0	ENST00000266497.5:c.4058T>G	p.Ile1353Ser	p.I1353S	ENST00000266497		1353	aTt/aGt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21630862	21630862	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202110155		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	117	309	0	ENST00000421138.2:c.742G>A	p.Ala248Thr	p.A248T	ENST00000421138		248	Gca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432540	49432540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	149	442	1	ENST00000301067.7:c.8599C>T	p.Pro2867Ser	p.P2867S	ENST00000301067	NM_003482.3	2867	Cca/Tca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432762	49432762	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	140	404	0	ENST00000301067.7:c.8377G>T	p.Gly2793Ter	p.G2793*	ENST00000301067	NM_003482.3	2793	Gga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446849	49446849	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1204392134		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	176	473	0	ENST00000301067.7:c.961C>T	p.Arg321Trp	p.R321W	ENST00000301067	NM_003482.3	321	Cgg/Tgg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481390	56481390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	198	471	0	ENST00000267101.3:c.577C>T	p.Arg193Ter	p.R193*	ENST00000267101	NM_001982.3	193	Cga/Tga																																																																															
MDM2	4193	MSKCC	GRCh37	12	69210645	69210645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	69	253	0	ENST00000462284.1:c.228G>T	p.Lys76Asn	p.K76N	ENST00000462284	NM_002392.5	76	aaG/aaT																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112893855	112893855	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	76	222	0	ENST00000351677.2:c.744G>T	p.Trp248Cys	p.W248C	ENST00000351677	NM_002834.3	248	tgG/tgT																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112940045	112940045	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150730493		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	145	363	0	ENST00000351677.2:c.1697C>T	p.Thr566Met	p.T566M	ENST00000351677	NM_002834.3	566	aCg/aTg																																																																															
MSI1	4440	MSKCC	GRCh37	12	120805870	120805870	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1038401875		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	145	455	0	ENST00000257552.2:c.208G>A	p.Asp70Asn	p.D70N	ENST00000257552	NM_002442.3	70	Gac/Aac																																																																															
POLE	5426	MSKCC	GRCh37	12	133241958	133241958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	152	418	0	ENST00000320574.5:c.2398C>A	p.Leu800Met	p.L800M	ENST00000320574	NM_006231.2	800	Ctg/Atg																																																																															
POLE	5426	MSKCC	GRCh37	12	133245017	133245017	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145793634		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	148	497	0	ENST00000320574.5:c.2098C>T	p.Pro700Ser	p.P700S	ENST00000320574	NM_006231.2	700	Cca/Tca																																																																															
FLT3	2322	MSKCC	GRCh37	13	28644702	28644702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	66	305	0	ENST00000241453.7:c.91C>T	p.Pro31Ser	p.P31S	ENST00000241453	NM_004119.2	31	Cct/Tct																																																																															
FLT3	2322	MSKCC	GRCh37	13	28674644	28674644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	196	715	0	ENST00000241453.7:c.4C>T	p.Pro2Ser	p.P2S	ENST00000241453	NM_004119.2	2	Ccg/Tcg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28880875	28880875	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1415091072		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	145	387	0	ENST00000282397.4:c.3755C>A	p.Ser1252Tyr	p.S1252Y	ENST00000282397	NM_002019.4	1252	tCt/tAt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29068938	29068938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	93	300	0	ENST00000282397.4:c.43C>T	p.Leu15Phe	p.L15F	ENST00000282397	NM_002019.4	15	Ctc/Ttc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911208	32911208	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs80358528		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	73	381	0	ENST00000380152.3:c.2716A>G	p.Thr906Ala	p.T906A	ENST00000380152		906	Act/Gct																																																																															
BRCA2	675	MSKCC	GRCh37	13	32932021	32932021	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	103	339	1	ENST00000380152.3:c.7760T>G	p.Leu2587Arg	p.L2587R	ENST00000380152		2587	cTc/cGc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937575	32937575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	117	367	1	ENST00000380152.3:c.8236A>G	p.Thr2746Ala	p.T2746A	ENST00000380152		2746	Aca/Gca																																																																															
RB1	5925	MSKCC	GRCh37	13	49033824	49033824	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs769113950		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	21	314	0	ENST00000267163.4:c.1961T>C	p.Val654Ala	p.V654A	ENST00000267163	NM_000321.2	654	gTg/gCg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103508430	103508430	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	53	225	1	ENST00000355739.4:c.496C>T	p.Gln166Ter	p.Q166*	ENST00000355739	NM_000123.3	166	Caa/Taa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515217	103515217	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	97	400	0	ENST00000355739.4:c.1718C>A	p.Ser573Tyr	p.S573Y	ENST00000355739	NM_000123.3	573	tCt/tAt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988288	36988288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756395940		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	88	364	0	ENST00000354822.5:c.365G>A	p.Gly122Asp	p.G122D	ENST00000354822	NM_001079668.2	122	gGc/gAc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81574798	81574798	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	92	380	0	ENST00000298171.2:c.692+2T>C		p.X231_splice	ENST00000298171	NM_000369.2	231																																																																																
TSHR	7253	MSKCC	GRCh37	14	81610127	81610127	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	122	489	0	ENST00000298171.2:c.1725G>T	p.Glu575Asp	p.E575D	ENST00000298171	NM_000369.2	575	gaG/gaT																																																																															
DICER1	23405	MSKCC	GRCh37	14	95557626	95557626	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060503625		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	127	429	0	ENST00000343455.3:c.5441C>T	p.Ser1814Leu	p.S1814L	ENST00000343455	NM_177438.2	1814	tCg/tTg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701235	43701235	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	162	435	0	ENST00000382044.4:c.5460C>A	p.Tyr1820Ter	p.Y1820*	ENST00000382044	NM_001141980.1	1820	taC/taA																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701845	43701845	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	103	248	0	ENST00000382044.4:c.5400G>T	p.Gln1800His	p.Q1800H	ENST00000382044	NM_001141980.1	1800	caG/caT																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43773212	43773212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	98	357	0	ENST00000382044.4:c.380G>A	p.Gly127Glu	p.G127E	ENST00000382044	NM_001141980.1	127	gGa/gAa																																																																															
USP8	9101	MSKCC	GRCh37	15	50774230	50774230	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	76	384	0	ENST00000307179.4:c.1771A>G	p.Thr591Ala	p.T591A	ENST00000307179		591	Aca/Gca																																																																															
BLM	641	MSKCC	GRCh37	15	91292641	91292641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	78	306	0	ENST00000355112.3:c.143C>A	p.Ser48Tyr	p.S48Y	ENST00000355112	NM_000057.2	48	tCt/tAt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2110710	2110710	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs559727962		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	127	444	0	ENST00000219476.3:c.1015G>A	p.Val339Ile	p.V339I	ENST00000219476	NM_000548.3	339	Gtc/Atc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2122928	2122928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	135	399	0	ENST00000219476.3:c.2299G>A	p.Val767Ile	p.V767I	ENST00000219476	NM_000548.3	767	Gtt/Att																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134341	2134341	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	167	505	0	ENST00000219476.3:c.4118A>G	p.Asp1373Gly	p.D1373G	ENST00000219476	NM_000548.3	1373	gAc/gGc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14016020	14016020	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	70	256	0	ENST00000311895.7:c.340C>A	p.Leu114Ile	p.L114I	ENST00000311895	NM_005236.2	114	Ctt/Att																																																																															
PALB2	79728	MSKCC	GRCh37	16	23634289	23634289	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	89	263	0	ENST00000261584.4:c.2996+1G>A		p.X999_splice	ENST00000261584	NM_024675.3	999																																																																																
CTCF	10664	MSKCC	GRCh37	16	67645270	67645270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	138	455	0	ENST00000264010.4:c.535G>A	p.Glu179Lys	p.E179K	ENST00000264010	NM_006565.3	179	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68842408	68842408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	147	430	1	ENST00000261769.5:c.469G>A	p.Val157Ile	p.V157I	ENST00000261769	NM_004360.3	157	Gtt/Att																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828457	72828457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	139	476	0	ENST00000268489.5:c.8124G>T	p.Gln2708His	p.Q2708H	ENST00000268489	NM_006885.3	2708	caG/caT																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86545061	86545061	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767146795		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	106	419	0	ENST00000262426.4:c.886G>A	p.Ala296Thr	p.A296T	ENST00000262426	NM_001451.2	296	Gcg/Acg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350783	89350783	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	125	305	0	ENST00000301030.4:c.2167G>T	p.Asp723Tyr	p.D723Y	ENST00000301030	NM_001256183.1	723	Gac/Tac																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11924292	11924292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	153	629	0	ENST00000353533.5:c.89G>A	p.Gly30Asp	p.G30D	ENST00000353533	NM_003010.3	30	gGc/gAc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11958259	11958259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	43	180	0	ENST00000353533.5:c.169G>T	p.Ala57Ser	p.A57S	ENST00000353533	NM_003010.3	57	Gca/Tca																																																																															
NF1	4763	MSKCC	GRCh37	17	29509661	29509661	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs749251299		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	79	407	0	ENST00000358273.4:c.866T>C	p.Val289Ala	p.V289A	ENST00000358273	NM_001042492.2	289	gTt/gCt																																																																															
NF1	4763	MSKCC	GRCh37	17	29553516	29553516	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	129	302	0	ENST00000358273.4:c.2065G>T	p.Val689Leu	p.V689L	ENST00000358273	NM_001042492.2	689	Gtg/Ttg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30310112	30310112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			49	27	74	0	ENST00000322652.5:c.1012C>A	p.Leu338Ile	p.L338I	ENST00000322652	NM_015355.2	338	Ctt/Att																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33434093	33434093	+	intron_variant	Intron	SNP	C	C	T	rs201141245		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	127	458	0	ENST00000335858.7:c.145-593G>A		p.*49*	ENST00000335858	NM_133629.2																																																																																	
SLFN11	91607	MSKCC	GRCh37	17	33679455	33679455	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	79	165	0	ENST00000308377.4:c.2626G>T	p.Ala876Ser	p.A876S	ENST00000308377	NM_152270.3	876	Gct/Tct																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883650	37883650	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1193632490		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	130	511	0	ENST00000269571.5:c.3262G>A	p.Gly1088Ser	p.G1088S	ENST00000269571		1088	Ggt/Agt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883740	37883740	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs928539621		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	179	491	0	ENST00000269571.5:c.3352G>A	p.Val1118Ile	p.V1118I	ENST00000269571		1118	Gta/Ata																																																																															
EZH1	2145	MSKCC	GRCh37	17	40864368	40864368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	131	392	0	ENST00000428826.2:c.1340G>A	p.Gly447Asp	p.G447D	ENST00000428826		447	gGc/gAc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244846	41244846	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397507202		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	102	384	0	ENST00000357654.3:c.2702T>C	p.Phe901Ser	p.F901S	ENST00000357654	NM_007294.3	901	tTt/tCt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436110	56436110	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369745984		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	177	490	0	ENST00000407977.2:c.1027C>T	p.Arg343Cys	p.R343C	ENST00000407977		343	Cgc/Tgc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554575	63554575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	179	514	0	ENST00000307078.5:c.164C>T	p.Thr55Ile	p.T55I	ENST00000307078	NM_004655.3	55	aCc/aTc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117737	70117737	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	151	446	0	ENST00000245479.2:c.205T>C	p.Phe69Leu	p.F69L	ENST00000245479	NM_000346.3	69	Ttc/Ctc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581157	48581157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	84	241	0	ENST00000342988.3:c.461C>T	p.Ser154Leu	p.S154L	ENST00000342988	NM_005359.5	154	tCa/tTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1219345	1219345	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs567769257		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	139	414	0	ENST00000326873.7:c.397G>A	p.Val133Met	p.V133M	ENST00000326873	NM_000455.4	133	Gtg/Atg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4095400	4095400	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	130	443	0	ENST00000262948.5:c.1032G>T	p.Glu344Asp	p.E344D	ENST00000262948	NM_030662.3	344	gaG/gaT																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5211642	5211642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	119	361	0	ENST00000357368.4:c.5193G>T	p.Glu1731Asp	p.E1731D	ENST00000357368	NM_002850.3	1731	gaG/gaT																																																																															
INSR	3643	MSKCC	GRCh37	19	7132173	7132173	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	108	373	0	ENST00000302850.5:c.2838C>A	p.Asp946Glu	p.D946E	ENST00000302850	NM_000208.2	946	gaC/gaA																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10254536	10254536	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	170	476	0	ENST00000340748.4:c.2974C>T	p.Arg992Ter	p.R992*	ENST00000340748		992	Cga/Tga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144152	11144152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	202	464	0	ENST00000344626.4:c.3733G>A	p.Ala1245Thr	p.A1245T	ENST00000344626	NM_003072.3	1245	Gcc/Acc																																																																															
CALR	811	MSKCC	GRCh37	19	13049533	13049533	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	108	401	0	ENST00000316448.5:c.40C>A	p.Leu14Met	p.L14M	ENST00000316448	NM_004343.3	14	Ctg/Atg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366231	15366231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	142	395	0	ENST00000263377.2:c.1924C>T	p.Pro642Ser	p.P642S	ENST00000263377	NM_058243.2	642	Ccc/Tcc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15383802	15383802	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35177876		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	191	504	0	ENST00000263377.2:c.109C>T	p.Pro37Ser	p.P37S	ENST00000263377	NM_058243.2	37	Cca/Tca																																																																															
UPF1	5976	MSKCC	GRCh37	19	18960988	18960988	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1189194959		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	151	430	2	ENST00000262803.5:c.566G>A	p.Arg189His	p.R189H	ENST00000262803	NM_002911.3	189	cGc/cAc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19261498	19261498	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	108	287	0	ENST00000162023.5:c.47A>G	p.Asn16Ser	p.N16S	ENST00000162023		16	aAt/aGt																																																																															
AXL	558	MSKCC	GRCh37	19	41748844	41748844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	131	402	0	ENST00000301178.4:c.1369G>A	p.Ala457Thr	p.A457T	ENST00000301178	NM_021913.4	457	Gca/Aca																																																																															
CIC	23152	MSKCC	GRCh37	19	42797149	42797149	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs916100307		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	158	567	0	ENST00000575354.2:c.3511C>T	p.Arg1171Trp	p.R1171W	ENST00000575354	NM_015125.3	1171	Cgg/Tgg																																																																															
CIC	23152	MSKCC	GRCh37	19	42797874	42797874	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1162455794		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	149	561	0	ENST00000575354.2:c.3926G>A	p.Ser1309Asn	p.S1309N	ENST00000575354	NM_015125.3	1309	aGc/aAc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422621	47422621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	128	363	0	ENST00000404338.3:c.689C>T	p.Ala230Val	p.A230V	ENST00000404338	NM_004491.4	230	gCg/gTg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423101	47423101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	140	446	0	ENST00000404338.3:c.1169C>T	p.Ala390Val	p.A390V	ENST00000404338	NM_004491.4	390	gCc/gTc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912476	50912476	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	119	406	2	ENST00000440232.2:c.1990C>A	p.Leu664Ile	p.L664I	ENST00000440232	NM_002691.3	664	Ctc/Atc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714717	52714717	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	139	441	0	ENST00000322088.6:c.475T>C	p.Ser159Pro	p.S159P	ENST00000322088	NM_014225.5	159	Tcc/Ccc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52723458	52723458	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	109	315	0	ENST00000322088.6:c.1319A>G	p.Asp440Gly	p.D440G	ENST00000322088	NM_014225.5	440	gAt/gGt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25459867	25459867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	113	305	0	ENST00000264709.3:c.2416G>A	p.Ala806Thr	p.A806T	ENST00000264709	NM_175629.2	806	Gca/Aca																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965233	25965233	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757158204		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	125	444	0	ENST00000435504.4:c.3973C>T	p.Pro1325Ser	p.P1325S	ENST00000435504		1325	Cca/Tca																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966109	25966109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	133	446	0	ENST00000435504.4:c.3097C>T	p.Pro1033Ser	p.P1033S	ENST00000435504		1033	Cca/Tca																																																																															
ALK	238	MSKCC	GRCh37	2	29917802	29917802	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	116	394	0	ENST00000389048.3:c.866C>A	p.Ser289Tyr	p.S289Y	ENST00000389048	NM_004304.4	289	tCc/tAc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605824	46605824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	103	363	0	ENST00000263734.3:c.1472C>A	p.Ser491Tyr	p.S491Y	ENST00000263734	NM_001430.4	491	tCt/tAt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637430	47637430	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	135	381	0	ENST00000233146.2:c.564G>T	p.Glu188Asp	p.E188D	ENST00000233146	NM_000251.2	188	gaG/gaT																																																																															
XPO1	7514	MSKCC	GRCh37	2	61715809	61715809	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	88	393	0	ENST00000401558.2:c.2120T>C	p.Val707Ala	p.V707A	ENST00000401558	NM_003400.3	707	gTa/gCa																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630749	67630749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	85	397	0	ENST00000272342.5:c.935C>T	p.Thr312Ile	p.T312I	ENST00000272342	NM_019002.3	312	aCc/aTc																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67632065	67632065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	63	371	0	ENST00000272342.5:c.2251C>T	p.His751Tyr	p.H751Y	ENST00000272342	NM_019002.3	751	Cat/Tat																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99136581	99136581	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528195084		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	144	377	0	ENST00000074304.5:c.70G>A	p.Asp24Asn	p.D24N	ENST00000074304	NM_001134224.1	24	Gac/Aac																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098983	178098983	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	105	347	0	ENST00000397062.3:c.62A>G	p.Asp21Gly	p.D21G	ENST00000397062	NM_006164.4	21	gAc/gGc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198265593	198265593	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	83	322	0	ENST00000335508.6:c.2564A>G	p.Asp855Gly	p.D855G	ENST00000335508	NM_012433.2	855	gAt/gGt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198269866	198269866	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	72	292	0	ENST00000335508.6:c.1473G>T	p.Glu491Asp	p.E491D	ENST00000335508	NM_012433.2	491	gaG/gaT																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198285263	198285263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	61	308	0	ENST00000335508.6:c.304G>A	p.Asp102Asn	p.D102N	ENST00000335508	NM_012433.2	102	Gat/Aat																																																																															
CASP8	841	MSKCC	GRCh37	2	202131474	202131474	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	120	415	0	ENST00000358485.4:c.442G>T	p.Glu148Ter	p.E148*	ENST00000358485	NM_001080125.1	148	Gaa/Taa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566711	212566711	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	94	377	0	ENST00000342788.4:c.1470C>A	p.Asn490Lys	p.N490K	ENST00000342788	NM_005235.2	490	aaC/aaA																																																																															
BARD1	580	MSKCC	GRCh37	2	215645673	215645673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	80	380	0	ENST00000260947.4:c.925A>G	p.Thr309Ala	p.T309A	ENST00000260947	NM_000465.2	309	Aca/Gca																																																																															
CUL3	8452	MSKCC	GRCh37	2	225360560	225360560	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	47	241	0	ENST00000264414.4:c.1831T>C	p.Tyr611His	p.Y611H	ENST00000264414	NM_003590.4	611	Tac/Cac																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538269	9538269	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	140	399	0	ENST00000353224.5:c.1729A>G	p.Thr577Ala	p.T577A	ENST00000353224	NM_177990.2	577	Aca/Gca																																																																															
CRKL	1399	MSKCC	GRCh37	22	21272338	21272338	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs966859460		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	160	503	0	ENST00000354336.3:c.116G>A	p.Arg39His	p.R39H	ENST00000354336	NM_005207.3	39	cGc/cAc																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288087	21288087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	132	361	0	ENST00000354336.3:c.332G>T	p.Gly111Val	p.G111V	ENST00000354336	NM_005207.3	111	gGa/gTa																																																																															
CRKL	1399	MSKCC	GRCh37	22	21304011	21304011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	98	308	0	ENST00000354336.3:c.790G>A	p.Val264Met	p.V264M	ENST00000354336	NM_005207.3	264	Gtg/Atg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21347181	21347181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	134	414	0	ENST00000215739.8:c.1248G>A	p.Met416Ile	p.M416I	ENST00000215739	NM_006767.3	416	atG/atA																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21351225	21351225	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	158	455	0	ENST00000215739.8:c.2376C>A	p.Cys792Ter	p.C792*	ENST00000215739	NM_006767.3	792	tgC/tgA																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22153324	22153324	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	107	299	0	ENST00000215832.6:c.586C>A	p.Pro196Thr	p.P196T	ENST00000215832	NM_002745.4	196	Cca/Aca																																																																															
RAC2	5880	MSKCC	GRCh37	22	37628942	37628942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	140	311	1	ENST00000249071.6:c.124G>T	p.Ala42Ser	p.A42S	ENST00000249071	NM_002872.4	42	Gcc/Tcc																																																																															
EP300	2033	MSKCC	GRCh37	22	41533658	41533658	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	119	336	0	ENST00000263253.7:c.1624C>T	p.Pro542Ser	p.P542S	ENST00000263253	NM_001429.3	542	Cca/Tca																																																																															
EP300	2033	MSKCC	GRCh37	22	41568536	41568536	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	84	306	0	ENST00000263253.7:c.4486A>G	p.Thr1496Ala	p.T1496A	ENST00000263253	NM_001429.3	1496	Aca/Gca																																																																															
PPARG	5468	MSKCC	GRCh37	3	12393124	12393124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	96	399	0	ENST00000287820.6:c.33C>G	p.Asp11Glu	p.D11E	ENST00000287820	NM_015869.4	11	gaC/gaG																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265592	41266289	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAGTTACTGAATTGGGGCTCTGCTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAG	TAGTTACTGAATTGGGGCTCTGCTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAG	-			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	92	243	0	ENST00000349496.5:c.13+21_241+46del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
MST1	4485	MSKCC	GRCh37	3	49723747	49723747	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs1160337817		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			43	22	84	0	ENST00000449682.2:c.1015A>G	p.Lys339Glu	p.K339E	ENST00000449682	NM_020998.3	339	Aaa/Gaa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52582107	52582107	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371624499		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	140	351	2	ENST00000394830.3:c.4721G>A	p.Arg1574His	p.R1574H	ENST00000394830	NM_018313.4	1574	cGc/cAc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52584635	52584635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	171	502	0	ENST00000394830.3:c.4378C>T	p.Pro1460Ser	p.P1460S	ENST00000394830	NM_018313.4	1460	Cca/Tca																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72881622	72881622	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	93	244	0	ENST00000325599.8:c.497G>T	p.Ser166Ile	p.S166I	ENST00000325599	NM_018130.2	166	aGt/aTt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851862	134851862	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	142	443	0	ENST00000398015.3:c.1268T>C	p.Val423Ala	p.V423A	ENST00000398015	NM_004441.4	423	gTc/gCc																																																																															
ATR	545	MSKCC	GRCh37	3	142188217	142188217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	58	303	0	ENST00000350721.4:c.6514C>T	p.Pro2172Ser	p.P2172S	ENST00000350721	NM_001184.3	2172	Cct/Tct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952039	178952039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	90	349	0	ENST00000263967.3:c.3094G>A	p.Glu1032Lys	p.E1032K	ENST00000263967	NM_006218.2	1032	Gag/Aag																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186503745	186503745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	34	348	0	ENST00000323963.5:c.422T>C	p.Val141Ala	p.V141A	ENST00000323963		141	gTt/gCt																																																																															
BCL6	604	MSKCC	GRCh37	3	187447289	187447289	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	152	493	0	ENST00000232014.4:c.904G>T	p.Glu302Ter	p.E302*	ENST00000232014	NM_001130845.1	302	Gaa/Taa																																																																															
TP63	8626	MSKCC	GRCh37	3	189612239	189612239	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1037603668		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	153	415	0	ENST00000264731.3:c.1991A>G	p.Asp664Gly	p.D664G	ENST00000264731	NM_003722.4	664	gAc/gGc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1918711	1918711	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	94	310	0	ENST00000382895.3:c.874A>C	p.Lys292Gln	p.K292Q	ENST00000382895	NM_133330.2	292	Aaa/Caa																																																																															
KIT	3815	MSKCC	GRCh37	4	55561771	55561771	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	120	367	1	ENST00000288135.5:c.161T>A	p.Ile54Asn	p.I54N	ENST00000288135	NM_000222.2	54	aTt/aAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361141	66361141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761254180		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	99	351	3	ENST00000273854.3:c.1031G>A	p.Arg344Lys	p.R344K	ENST00000273854	NM_004439.5	344	aGg/aAg																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84391500	84391500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	37	145	0	ENST00000321945.7:c.332C>T	p.Thr111Met	p.T111M	ENST00000321945	NM_139076.2	111	aCg/aTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106196445	106196445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	103	433	0	ENST00000380013.4:c.4778G>A	p.Ser1593Asn	p.S1593N	ENST00000380013	NM_001127208.2	1593	aGc/aAc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007298	143007298	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs199647396		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	90	236	0	ENST00000262992.4:c.2486C>T	p.Thr829Met	p.T829M	ENST00000262992	NM_001101669.1	829	aCg/aTg																																																																															
GAB1	2549	MSKCC	GRCh37	4	144258393	144258393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	104	332	0	ENST00000262994.4:c.52G>A	p.Glu18Lys	p.E18K	ENST00000262994	NM_002039.3	18	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630714	187630714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	138	440	0	ENST00000441802.2:c.268C>T	p.Leu90Phe	p.L90F	ENST00000441802	NM_005245.3	90	Ctc/Ttc																																																																															
SDHA	6389	MSKCC	GRCh37	5	251108	251108	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	31	211	0	ENST00000264932.6:c.1553C>T	p.Ser518Leu	p.S518L	ENST00000264932	NM_004168.2	518	tCa/tTa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31451671	31451671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	60	312	0	ENST00000344624.3:c.2651G>A	p.Gly884Glu	p.G884E	ENST00000344624		884	gGa/gAa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38975660	38975660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	94	354	0	ENST00000357387.3:c.868G>A	p.Ala290Thr	p.A290T	ENST00000357387	NM_152756.3	290	Gca/Aca																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56176627	56176627	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	68	296	0	ENST00000399503.3:c.2177C>T	p.Ala726Val	p.A726V	ENST00000399503	NM_005921.1	726	gCt/gTt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522571	67522571	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	108	361	0	ENST00000274335.5:c.68A>G	p.Asp23Gly	p.D23G	ENST00000274335		23	gAc/gGc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86628356	86628356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	63	279	0	ENST00000274376.6:c.725G>A	p.Gly242Asp	p.G242D	ENST00000274376	NM_002890.2	242	gGt/gAt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675930	30675930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	321	419	0	ENST00000376406.3:c.2426C>T	p.Thr809Ile	p.T809I	ENST00000376406	NM_014641.2	809	aCt/aTt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32182004	32182004	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	160	431	0	ENST00000375023.3:c.2050A>G	p.Thr684Ala	p.T684A	ENST00000375023	NM_004557.3	684	Acg/Gcg																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64286816	64286816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	84	301	0	ENST00000370651.3:c.31G>A	p.Glu11Lys	p.E11K	ENST00000370651	NM_003463.4	11	Gaa/Aaa																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89791085	89791085	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	89	277	0	ENST00000336032.3:c.472G>T	p.Glu158Ter	p.E158*	ENST00000336032	NM_006813.2	158	Gag/Tag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93955151	93955151	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	68	280	0	ENST00000369303.4:c.2747A>G	p.Asp916Gly	p.D916G	ENST00000369303	NM_004440.3	916	gAt/gGt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106543511	106543511	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	103	316	0	ENST00000369096.4:c.313G>T	p.Glu105Ter	p.E105*	ENST00000369096	NM_001198.3	105	Gaa/Taa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553288	106553288	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	172	441	0	ENST00000369096.4:c.1253A>G	p.Tyr418Cys	p.Y418C	ENST00000369096	NM_001198.3	418	tAc/tGc																																																																															
FYN	2534	MSKCC	GRCh37	6	112015835	112015835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	118	358	0	ENST00000368678.4:c.1106C>T	p.Ala369Val	p.A369V	ENST00000368678		369	gCa/gTa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152415654	152415654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	128	428	0	ENST00000206249.3:c.1504C>A	p.Gln502Lys	p.Q502K	ENST00000206249	NM_000125.3	502	Cag/Aag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100494	157100494	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	64	224	0	ENST00000346085.5:c.1431G>T	p.Lys477Asn	p.K477N	ENST00000346085	NM_020732.3	477	aaG/aaT																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157519946	157519946	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	102	339	0	ENST00000346085.5:c.4015C>T	p.His1339Tyr	p.H1339Y	ENST00000346085	NM_020732.3	1339	Cat/Tat																																																																															
PARK2	5071	MSKCC	GRCh37	6	161781146	161781146	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs531247345		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	133	372	0	ENST00000366898.1:c.1259G>A	p.Arg420His	p.R420H	ENST00000366898	NM_004562.2	420	cGc/cAc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683577	162683577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	99	355	0	ENST00000366898.1:c.392C>T	p.Ser131Leu	p.S131L	ENST00000366898	NM_004562.2	131	tCa/tTa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683718	162683718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	139	387	0	ENST00000366898.1:c.251G>A	p.Gly84Glu	p.G84E	ENST00000366898	NM_004562.2	84	gGa/gAa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2963888	2963888	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	142	440	0	ENST00000396946.4:c.1919T>G	p.Phe640Cys	p.F640C	ENST00000396946	NM_032415.4	640	tTc/tGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55260523	55260523	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1334821010		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	91	293	0	ENST00000275493.2:c.2690T>C	p.Val897Ala	p.V897A	ENST00000275493	NM_005228.3	897	gTc/gCc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508162	106508162	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	125	417	0	ENST00000359195.3:c.156G>T	p.Lys52Asn	p.K52N	ENST00000359195	NM_002649.2	52	aaG/aaT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508568	106508568	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs946794098		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	135	378	0	ENST00000359195.3:c.562G>A	p.Val188Met	p.V188M	ENST00000359195	NM_002649.2	188	Gtg/Atg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513035	106513035	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1444356091		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	114	333	0	ENST00000359195.3:c.2049G>T	p.Lys683Asn	p.K683N	ENST00000359195	NM_002649.2	683	aaG/aaT																																																																															
BRAF	673	MSKCC	GRCh37	7	140494148	140494148	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	137	452	1	ENST00000288602.6:c.1100C>A	p.Pro367His	p.P367H	ENST00000288602	NM_004333.4	367	cCc/cAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140534477	140534477	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769648920		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	102	350	0	ENST00000288602.6:c.436C>T	p.Arg146Trp	p.R146W	ENST00000288602	NM_004333.4	146	Cgg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140534557	140534557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	113	382	1	ENST00000288602.6:c.356C>T	p.Thr119Ile	p.T119I	ENST00000288602	NM_004333.4	119	aCc/aTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873746	151873746	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	151	441	0	ENST00000262189.6:c.8792A>G	p.Asp2931Gly	p.D2931G	ENST00000262189	NM_170606.2	2931	gAc/gGc																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346215	152346215	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	113	411	0	ENST00000359321.1:c.355T>C	p.Tyr119His	p.Y119H	ENST00000359321	NM_005431.1	119	Tac/Cac																																																																															
PREX2	80243	MSKCC	GRCh37	8	69012038	69012038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	52	302	0	ENST00000288368.4:c.2675G>A	p.Arg892Lys	p.R892K	ENST00000288368	NM_024870.2	892	aGa/aAa																																																																															
NBN	4683	MSKCC	GRCh37	8	90958399	90958399	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1425101720		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	57	293	0	ENST00000265433.3:c.2039G>A	p.Gly680Asp	p.G680D	ENST00000265433	NM_002485.4	680	gGt/gAt																																																																															
NBN	4683	MSKCC	GRCh37	8	90990546	90990546	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	20	218	0	ENST00000265433.3:c.486A>G	p.Ile162Met	p.I162M	ENST00000265433	NM_002485.4	162	atA/atG																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145736897	145736897	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376981214		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	136	400	0	ENST00000428558.2:c.3544C>T	p.Arg1182Cys	p.R1182C	ENST00000428558	NM_004260.3	1182	Cgc/Tgc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738673	145738673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	180	451	0	ENST00000428558.2:c.2391C>A	p.Ser797Arg	p.S797R	ENST00000428558	NM_004260.3	797	agC/agA																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2161770	2161770	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	100	373	0	ENST00000349721.2:c.4066C>T	p.Pro1356Ser	p.P1356S	ENST00000349721	NM_003070.3	1356	Cct/Tct																																																																															
MTAP	4507	MSKCC	GRCh37	9	21859365	21859365	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868490964		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	121	344	0	ENST00000380172.4:c.754C>T	p.Leu252Phe	p.L252F	ENST00000380172	NM_002451.3	252	Ctc/Ttc																																																																															
CDKN2B-AS1	100048912	MSKCC	GRCh37	9	21994210	21994210	+	upstream_gene_variant	5'Flank	SNP	C	C	T	rs1064793582		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	141	417	0				ENST00000428597																																																																																		
TEK	7010	MSKCC	GRCh37	9	27204908	27204908	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	116	318	0	ENST00000380036.4:c.2210-1G>T		p.X737_splice	ENST00000380036	NM_000459.3	737																																																																																
TEK	7010	MSKCC	GRCh37	9	27212803	27212803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	147	431	0	ENST00000380036.4:c.2785G>A	p.Ala929Thr	p.A929T	ENST00000380036	NM_000459.3	929	Gcc/Acc																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80343495	80343495	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	76	323	0	ENST00000286548.4:c.824A>G	p.Lys275Arg	p.K275R	ENST00000286548	NM_002072.3	275	aAg/aGg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98238367	98238367	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	154	414	0	ENST00000331920.6:c.1677C>A	p.Phe559Leu	p.F559L	ENST00000331920	NM_000264.3	559	ttC/ttA																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911513	101911513	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs925777307		P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	115	313	1	ENST00000374994.4:c.1438G>A	p.Ala480Thr	p.A480T	ENST00000374994	NM_004612.2	480	Gca/Aca																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127916010	127916010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	101	361	0	ENST00000373547.4:c.471G>T	p.Glu157Asp	p.E157D	ENST00000373547	NM_002721.4	157	gaG/gaT																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772646	135772646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	118	447	0	ENST00000298552.3:c.2900G>A	p.Gly967Asp	p.G967D	ENST00000298552	NM_001162426.1	967	gGc/gAc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137321010	137321010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	142	449	0	ENST00000481739.1:c.967G>A	p.Gly323Arg	p.G323R	ENST00000481739	NM_002957.4	323	Ggg/Agg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391193	139391193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	182	607	0	ENST00000277541.6:c.6998G>A	p.Gly2333Asp	p.G2333D	ENST00000277541	NM_017617.3	2333	gGc/gAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391488	139391488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	142	527	0	ENST00000277541.6:c.6703C>A	p.Pro2235Thr	p.P2235T	ENST00000277541	NM_017617.3	2235	Cct/Act																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395183	139395183	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	141	484	0	ENST00000277541.6:c.5755A>C	p.Ser1919Arg	p.S1919R	ENST00000277541	NM_017617.3	1919	Agc/Cgc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317548	1317548	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	83	215	0				ENST00000381566																																																																																		
ARAF	369	MSKCC	GRCh37	X	47422673	47422673	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	169	214	0	ENST00000377045.4:c.145C>A	p.Leu49Met	p.L49M	ENST00000377045	NM_001654.4	49	Ctg/Atg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53224213	53224213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	149	242	0	ENST00000375401.3:c.3338C>T	p.Thr1113Ile	p.T1113I	ENST00000375401	NM_004187.3	1113	aCc/aTc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227014	53227014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	106	172	1	ENST00000375401.3:c.2561G>A	p.Arg854Gln	p.R854Q	ENST00000375401	NM_004187.3	854	cGg/cAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410976	63410976	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	129	271	0	ENST00000330258.3:c.2191G>T	p.Asp731Tyr	p.D731Y	ENST00000330258	NM_152424.3	731	Gac/Tac																																																																															
MED12	9968	MSKCC	GRCh37	X	70356464	70356464	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	201	210	0	ENST00000374080.3:c.5359A>G	p.Thr1787Ala	p.T1787A	ENST00000374080		1787	Acc/Gcc																																																																															
ATRX	546	MSKCC	GRCh37	X	76763836	76763836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	90	162	0	ENST00000373344.5:c.7472C>T	p.Ser2491Leu	p.S2491L	ENST00000373344	NM_000489.3	2491	tCa/tTa																																																																															
BTK	695	MSKCC	GRCh37	X	100613342	100613342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	118	178	0	ENST00000308731.7:c.1058G>A	p.Ser353Asn	p.S353N	ENST00000308731	NM_000061.2	353	aGc/aAc																																																																															
ATR	545	MSKCC	GRCh37	3	142277535	142277535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	77	261	0	ENST00000350721.4:c.1816G>A	p.Gly606Ser	p.G606S	ENST00000350721	NM_001184.3	606	Ggc/Agc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411206	63411208	+	missense_variant	Missense_Mutation	ONP	TAC	TAC	CAA			P-0058806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	118	248	0	ENST00000330258.3:c.1959_1961delinsTTG	p.Glu653_Tyr654delinsAspCys	p.E653_Y654delinsDC	ENST00000330258	NM_152424.3	653	gaGTAt/gaTTGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750600586		P-0059232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	185	588	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0059232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	62	356	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0059232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	109	491	0	ENST00000257430.4:c.4473del	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
LATS1	9113	MSKCC	GRCh37	6	150016264	150016264	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0059232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	82	265	0	ENST00000253339.5:c.442C>T	p.Arg148Ter	p.R148*	ENST00000253339		148	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0059232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	78	253	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CCND1	595	MSKCC	GRCh37	11	69457804	69457804	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	34	397	0	ENST00000227507.2:c.204C>G	p.Cys68Trp	p.C68W	ENST00000227507	NM_053056.2	68	tgC/tgG																																																																															
INPP4B	8821	MSKCC	GRCh37	4	142950069	142950069	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0059232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	27	324	0	ENST00000262992.4:c.2643-2A>G		p.X881_splice	ENST00000262992	NM_001101669.1	881																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32172093	32172093	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	41	478	0	ENST00000375023.3:c.2939A>G	p.His980Arg	p.H980R	ENST00000375023	NM_004557.3	980	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112151291	112151291	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs876660765		P-0059358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	88	332	0	ENST00000257430.4:c.933+1G>A		p.X311_splice	ENST00000257430	NM_000038.5	311																																																																																
SOX9	6662	MSKCC	GRCh37	17	70117728	70117728	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0059358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	334	715	0	ENST00000245479.2:c.196G>T	p.Glu66Ter	p.E66*	ENST00000245479	NM_000346.3	66	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	111	311	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579554	7579554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	144	587	0	ENST00000269305.4:c.133del	p.Leu45CysfsTer78	p.L45Cfs*78	ENST00000269305	NM_001126112.2	45	Ctg/tg																																																																															
APC	324	MSKCC	GRCh37	5	112174886	112174886	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0059358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	151	434	0	ENST00000257430.4:c.3595A>T	p.Lys1199Ter	p.K1199*	ENST00000257430	NM_000038.5	1199	Aag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0059360-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	128	600	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0059360-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	42	514	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0059360-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	104	275	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440951	56440951	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059360-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	49	603	1	ENST00000407977.2:c.386C>A	p.Ala129Glu	p.A129E	ENST00000407977		129	gCg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112174362	112174362	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059360-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	88	413	0	ENST00000257430.4:c.3071C>A	p.Pro1024Gln	p.P1024Q	ENST00000257430	NM_000038.5	1024	cCa/cAa																																																																															
HGF	3082	MSKCC	GRCh37	7	81374389	81374389	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059360-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	108	353	0	ENST00000222390.5:c.673C>A	p.His225Asn	p.H225N	ENST00000222390	NM_000601.4	225	Cat/Aat																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0059492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	127	409	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0059492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	247	593	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492817	56492817	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	218	583	0	ENST00000407977.2:c.122del	p.Ser41Ter	p.S41*	ENST00000407977		41	tCa/ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0059580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	231	456	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398123121		P-0059580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	221	400	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178663	32178663	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144069425		P-0059580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	250	460	0	ENST00000375023.3:c.2731G>A	p.Gly911Ser	p.G911S	ENST00000375023	NM_004557.3	911	Ggc/Agc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157510904	157510904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	229	419	0	ENST00000346085.5:c.3679C>T	p.Gln1227Ter	p.Q1227*	ENST00000346085	NM_020732.3	1227	Caa/Taa																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116254	209116254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	64	312	0	ENST00000345146.2:c.22G>T	p.Gly8Cys	p.G8C	ENST00000345146	NM_005896.2	8	Ggt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	79	236	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920410	114920410	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	192	344	0	ENST00000543371.1:c.1351T>A	p.Phe451Ile	p.F451I	ENST00000543371	NM_001198531.1	451	Ttc/Atc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0059584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	10	211	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0059584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	54	467	1	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	42	559	1	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
MPL	4352	MSKCC	GRCh37	1	43812205	43812205	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866559375		P-0059584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	45	566	2	ENST00000372470.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000372470	NM_005373.2	357	cGa/cAa																																																																															
KIT	3815	MSKCC	GRCh37	4	55602691	55602691	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	36	417	0	ENST00000288135.5:c.2512C>A	p.Pro838Thr	p.P838T	ENST00000288135	NM_000222.2	838	Cct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0059584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	23	321	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174395	11174395	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1085307113		P-0059584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	36	448	0	ENST00000361445.4:c.7280T>C	p.Leu2427Pro	p.L2427P	ENST00000361445	NM_004958.3	2427	cTg/cCg																																																																															
APC	324	MSKCC	GRCh37	5	112162845	112162845	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0059584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	21	405	0	ENST00000257430.4:c.1449T>A	p.Cys483Ter	p.C483*	ENST00000257430	NM_000038.5	483	tgT/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112175768	112175768	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0059584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	57	521	0	ENST00000257430.4:c.4477del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1493	Acg/cg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0059598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	40	345	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604785	48604785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	160	413	0	ENST00000342988.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000342988	NM_005359.5	536	cTa/cCa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877391	40877391	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372713520		P-0059598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	233	417	0	ENST00000373198.4:c.2305G>A	p.Val769Met	p.V769M	ENST00000373198	NM_133170.3	769	Gtg/Atg																																																																															
ATM	472	MSKCC	GRCh37	11	108115681	108115681	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs876660933		P-0059598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	90	373	0	ENST00000278616.4:c.829G>T	p.Glu277Ter	p.E277*	ENST00000278616	NM_000051.3	277	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0059598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	41	284	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266049	41266557	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	CCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCAT	CCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCAT	-			P-0059598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	154	461	0	ENST00000349496.5:c.48_356del		p.X16_splice	ENST00000349496	NM_001904.3	16	CCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCAT/-																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0059615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	27	381	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0059615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	64	548	1	ENST00000257430.4:c.4473del	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0059615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			79	142	513	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106508424	106508424	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751449393		P-0059615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	108	600	0	ENST00000359195.3:c.418C>T	p.Arg140Trp	p.R140W	ENST00000359195	NM_002649.2	140	Cgg/Tgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911575	114911575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	101	530	0	ENST00000543371.1:c.1093A>G	p.Arg365Gly	p.R365G	ENST00000543371	NM_001198531.1	365	Aga/Gga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0059615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	100	291	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245373	153245373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			81	46	306	0	ENST00000281708.4:c.1818G>T	p.Trp606Cys	p.W606C	ENST00000281708	NM_033632.3	606	tgG/tgT																																																																															
APC	324	MSKCC	GRCh37	5	112173645	112173645	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	TC			P-0059615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	51	404	0	ENST00000257430.4:c.2354delinsTC	p.His785LeufsTer3	p.H785Lfs*3	ENST00000257430	NM_000038.5	785	cAt/cTCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0059626-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	253	393	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932963	39932963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059626-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	292	295	0	ENST00000378444.4:c.1636C>T	p.Arg546Cys	p.R546C	ENST00000378444	NM_001123385.1	546	Cgc/Tgc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88659807	88659807	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131691178		P-0059626-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			62	72	219	0	ENST00000372037.3:c.454C>T	p.Arg152Ter	p.R152*	ENST00000372037	NM_004329.2	152	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343311	118344234	+	inframe_deletion	In_Frame_Del	DEL	TAGTAGCCCCAGTGTTGATACCTCCACAGACTCTCAGGCTTCTGAGGAGATTCAGGTACTTCCTGAGGAGCGGAGCGATACCCCTGAAGTTCATCCTCCACTGCCCATTTCCCAGTCCCCAGAAAATGAGAGTAATGATAGGAGAAGCAGAAGGTATTCAGTGTCGGAGAGAAGTTTTGGATCTAGAACGACGAAAAAATTATCAACTCTACAAAGTGCCCCCCAGCAGCAGACCTCCTCGTCTCCACCTCCACCTCTGCTGACTCCACCGCCACCACTGCAGCCAGCCTCCAGTATCTCTGACCACACACCTTGGCTTATGCCTCCAACAATCCCCTTAGCATCACCATTTTTGCCTGCTTCCACTGCTCCTATGCAAGGGAAGCGAAAATCTATTTTGCGAGAACCGACATTTAGGTGGACTTCTTTAAAGCATTCTAGGTCAGAGCCACAATACTTTTCCTCAGCAAAGTATGCCAAAGAAGGTCTTATTCGCAAACCAATATTTGATAATTTCCGACCCCCTCCACTAACTCCCGAGGACGTTGGCTTTGCATCTGGTTTTTCTGCATCTGGTACCGCTGCTTCAGCCCGATTGTTTTCGCCACTCCATTCTGGAACAAGGTTTGATATGCACAAAAGGAGCCCTCTTCTGAGAGCTCCAAGATTTACTCCAAGTGAGGCTCACTCTAGAATATTTGAGTCTGTAACCTTGCCTAGTAATCGAACTTCTGCTGGAACATCTTCTTCAGGAGTATCCAATAGAAAAAGGAAAAGAAAAGTGTTTAGTCCTATTCGATCTGAACCAAGATCTCCTTCTCACTCCATGAGGACAAGAAGTGGAAGGCTTAGTAGTTCTGAGCTCTCACCTCTCACCCCCCCGTCTTCTGTCTCTTCCTCGTTAAGCATTTCTGTTAGTCCTCT	TAGTAGCCCCAGTGTTGATACCTCCACAGACTCTCAGGCTTCTGAGGAGATTCAGGTACTTCCTGAGGAGCGGAGCGATACCCCTGAAGTTCATCCTCCACTGCCCATTTCCCAGTCCCCAGAAAATGAGAGTAATGATAGGAGAAGCAGAAGGTATTCAGTGTCGGAGAGAAGTTTTGGATCTAGAACGACGAAAAAATTATCAACTCTACAAAGTGCCCCCCAGCAGCAGACCTCCTCGTCTCCACCTCCACCTCTGCTGACTCCACCGCCACCACTGCAGCCAGCCTCCAGTATCTCTGACCACACACCTTGGCTTATGCCTCCAACAATCCCCTTAGCATCACCATTTTTGCCTGCTTCCACTGCTCCTATGCAAGGGAAGCGAAAATCTATTTTGCGAGAACCGACATTTAGGTGGACTTCTTTAAAGCATTCTAGGTCAGAGCCACAATACTTTTCCTCAGCAAAGTATGCCAAAGAAGGTCTTATTCGCAAACCAATATTTGATAATTTCCGACCCCCTCCACTAACTCCCGAGGACGTTGGCTTTGCATCTGGTTTTTCTGCATCTGGTACCGCTGCTTCAGCCCGATTGTTTTCGCCACTCCATTCTGGAACAAGGTTTGATATGCACAAAAGGAGCCCTCTTCTGAGAGCTCCAAGATTTACTCCAAGTGAGGCTCACTCTAGAATATTTGAGTCTGTAACCTTGCCTAGTAATCGAACTTCTGCTGGAACATCTTCTTCAGGAGTATCCAATAGAAAAAGGAAAAGAAAAGTGTTTAGTCCTATTCGATCTGAACCAAGATCTCCTTCTCACTCCATGAGGACAAGAAGTGGAAGGCTTAGTAGTTCTGAGCTCTCACCTCTCACCCCCCCGTCTTCTGTCTCTTCCTCGTTAAGCATTTCTGTTAGTCCTCT	-			P-0059626-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	84	455	0	ENST00000534358.1:c.1438_2361del	p.Ser480_Leu787del	p.S480_L787del	ENST00000534358	NM_005933.3	479	tcTAGTAGCCCCAGTGTTGATACCTCCACAGACTCTCAGGCTTCTGAGGAGATTCAGGTACTTCCTGAGGAGCGGAGCGATACCCCTGAAGTTCATCCTCCACTGCCCATTTCCCAGTCCCCAGAAAATGAGAGTAATGATAGGAGAAGCAGAAGGTATTCAGTGTCGGAGAGAAGTTTTGGATCTAGAACGACGAAAAAATTATCAACTCTACAAAGTGCCCCCCAGCAGCAGACCTCCTCGTCTCCACCTCCACCTCTGCTGACTCCACCGCCACCACTGCAGCCAGCCTCCAGTATCTCTGACCACACACCTTGGCTTATGCCTCCAACAATCCCCTTAGCATCACCATTTTTGCCTGCTTCCACTGCTCCTATGCAAGGGAAGCGAAAATCTATTTTGCGAGAACCGACATTTAGGTGGACTTCTTTAAAGCATTCTAGGTCAGAGCCACAATACTTTTCCTCAGCAAAGTATGCCAAAGAAGGTCTTATTCGCAAACCAATATTTGATAATTTCCGACCCCCTCCACTAACTCCCGAGGACGTTGGCTTTGCATCTGGTTTTTCTGCATCTGGTACCGCTGCTTCAGCCCGATTGTTTTCGCCACTCCATTCTGGAACAAGGTTTGATATGCACAAAAGGAGCCCTCTTCTGAGAGCTCCAAGATTTACTCCAAGTGAGGCTCACTCTAGAATATTTGAGTCTGTAACCTTGCCTAGTAATCGAACTTCTGCTGGAACATCTTCTTCAGGAGTATCCAATAGAAAAAGGAAAAGAAAAGTGTTTAGTCCTATTCGATCTGAACCAAGATCTCCTTCTCACTCCATGAGGACAAGAAGTGGAAGGCTTAGTAGTTCTGAGCTCTCACCTCTCACCCCCCCGTCTTCTGTCTCTTCCTCGTTAAGCATTTCTGTTAGTCCTCTt/tct																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30047517	30047517	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0059626-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	32	229	0	ENST00000331968.5:c.2484C>A	p.Tyr828Ter	p.Y828*	ENST00000331968	NM_002742.2	828	taC/taA																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783788	50783788	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059626-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	140	396	0	ENST00000398568.2:c.179T>C	p.Ile60Thr	p.I60T	ENST00000398568	NM_001042412.1	60	aTt/aCt																																																																															
NF1	4763	MSKCC	GRCh37	17	29541563	29541563	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0059626-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			62	19	128	0	ENST00000358273.4:c.1487T>G	p.Met496Arg	p.M496R	ENST00000358273	NM_001042492.2	496	aTg/aGg																																																																															
REL	5966	MSKCC	GRCh37	2	61145537	61145537	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059626-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	36	228	0	ENST00000295025.8:c.649G>C	p.Glu217Gln	p.E217Q	ENST00000295025	NM_002908.2	217	Gaa/Caa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31435924	31435924	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs747793683		P-0059626-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	50	299	0	ENST00000344624.3:c.2990C>A	p.Ala997Glu	p.A997E	ENST00000344624		997	gCa/gAa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672857	86672857	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0059626-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			66	65	328	0	ENST00000274376.6:c.2344G>T	p.Asp782Tyr	p.D782Y	ENST00000274376	NM_002890.2	782	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0059632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	168	341	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0059632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	166	355	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0059632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	91	214	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16235970	16235970	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	116	270	0	ENST00000375759.3:c.1036T>C	p.Ser346Pro	p.S346P	ENST00000375759	NM_015001.2	346	Tct/Cct																																																																															
APC	324	MSKCC	GRCh37	5	112173572	112173573	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0059632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	40	314	0	ENST00000257430.4:c.2282_2283dup	p.Ala762LysfsTer4	p.A762Kfs*4	ENST00000257430	NM_000038.5	761	gaa/gAAaa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157406027	157406028	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0059632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	166	327	0	ENST00000346085.5:c.2270dup	p.Ser758LysfsTer5	p.S758Kfs*5	ENST00000346085	NM_020732.3	757	gca/gCca																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964482	70964482	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	113	373	0	ENST00000276594.2:c.1546C>A	p.Pro516Thr	p.P516T	ENST00000276594	NM_024504.3	516	Ccc/Acc																																																																															
POLE	5426	MSKCC	GRCh37	12	133209381	133209381	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1247397969		P-0059640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	141	539	0	ENST00000320574.5:c.6005C>T	p.Ala2002Val	p.A2002V	ENST00000320574	NM_006231.2	2002	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576887	7576891	+	stop_gained	Nonsense_Mutation	ONP	TTCTT	TTCTT	CTCTA			P-0059640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	302	633	0	ENST00000269305.4:c.955_959delinsTAGAG	p.Lys319_Lys320delinsTer	p.K319_K320delins*	ENST00000269305	NM_001126112.2	319	AAGAAg/TAGAGg																																																																															
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	222	437	0	ENST00000257430.4:c.3944C>A	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0059642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	382	542	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0059642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	161	532	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175724	112175724	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	185	593	0	ENST00000257430.4:c.4435del	p.Val1479SerfsTer28	p.V1479Sfs*28	ENST00000257430	NM_000038.5	1478	aGg/ag																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0059649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	149	747	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0059649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	202	595	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576887	7576891	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTT	TTCTT	-			P-0059649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	150	793	0	ENST00000269305.4:c.955_959del	p.Lys319GlufsTer16	p.K319Efs*16	ENST00000269305	NM_001126112.2	319	AAGAAg/g																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262102	10262102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	298	783	1	ENST00000340748.4:c.2189G>A	p.Arg730His	p.R730H	ENST00000340748		730	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624271	89624272	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0059649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	64	271	0	ENST00000371953.3:c.46dup	p.Tyr16LeufsTer28	p.Y16Lfs*28	ENST00000371953	NM_000314.4	15	-/T																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	166	408	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41215951	41215951	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	114	497	0	ENST00000357654.3:c.5092del	p.Glu1698AsnfsTer4	p.E1698Nfs*4	ENST00000357654	NM_007294.3	1698	Gaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112173783	112173784	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0059649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	219	590	0	ENST00000257430.4:c.2493dup	p.Pro832ThrfsTer12	p.P832Tfs*12	ENST00000257430	NM_000038.5	831	tta/ttAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604701	48604701	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	54	524	0	ENST00000342988.3:c.1523G>T	p.Gly508Val	p.G508V	ENST00000342988	NM_005359.5	508	gGc/gTc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589812	69589812	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1158890592		P-0059666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	30	943	0	ENST00000168712.1:c.41C>T	p.Ala14Val	p.A14V	ENST00000168712	NM_002007.2	14	gCg/gTg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368258	45368258	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	41	467	0	ENST00000262160.6:c.1344G>A	p.Trp448Ter	p.W448*	ENST00000262160	NM_005901.5	448	tgG/tgA																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99204042	99204042	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs529481819		P-0059666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	45	363	0	ENST00000074304.5:c.2905G>A	p.Glu969Lys	p.E969K	ENST00000074304	NM_001134224.1	969	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0059666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	48	315	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112176024	112176025	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TATTATTT			P-0059666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	30	586	0	ENST00000257430.4:c.4734_4741dup	p.Ser1581LeufsTer72	p.S1581Lfs*72	ENST00000257430	NM_000038.5	1578	tgt/tgTATTATTTt																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0059940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	64	637	1	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578179	7578179	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0059940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	145	715	2	ENST00000269305.4:c.670G>T	p.Glu224Ter	p.E224*	ENST00000269305	NM_001126112.2	224	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0059940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	27	595	0	ENST00000257430.4:c.4063del	p.Ser1355LeufsTer60	p.S1355Lfs*60	ENST00000257430	NM_000038.5	1354	Ttt/tt																																																																															
MSI1	4440	MSKCC	GRCh37	12	120783979	120783979	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112244011		P-0059940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	69	748	3	ENST00000257552.2:c.1006G>A	p.Ala336Thr	p.A336T	ENST00000257552	NM_002442.3	336	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0060010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	208	447	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0060010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	101	457	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
APC	324	MSKCC	GRCh37	5	112174086	112174086	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs878853432		P-0060010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	154	417	0	ENST00000257430.4:c.2795C>G	p.Ser932Ter	p.S932*	ENST00000257430	NM_000038.5	932	tCa/tGa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006827	47006827	+	5_prime_UTR_variant	5'UTR	SNP	C	C	T			P-0060010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	356	261	1	ENST00000329236.7:c.-54C>T		p.*18*	ENST00000329236	NM_001204466.1																																																																																	
CDK6	1021	MSKCC	GRCh37	7	92247472	92247472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			771	303	539	0	ENST00000265734.4:c.748C>T	p.Pro250Ser	p.P250S	ENST00000265734	NM_001259.6	250	Ccc/Tcc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139403494	139403494	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			993	91	575	0	ENST00000277541.6:c.2999A>G	p.Asp1000Gly	p.D1000G	ENST00000277541	NM_017617.3	1000	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0060029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	230	483	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40747084	40747084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762809890		P-0060029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	338	427	0	ENST00000373198.4:c.2998G>A	p.Ala1000Thr	p.A1000T	ENST00000373198	NM_133170.3	1000	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0060029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	105	393	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372459	55372459	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1261506897		P-0060029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	98	617	0	ENST00000297316.4:c.1149C>G	p.Asp383Glu	p.D383E	ENST00000297316	NM_022454.3	383	gaC/gaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0060059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	222	607	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288969	212288969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148791072		P-0060059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	63	535	0	ENST00000342788.4:c.2777C>T	p.Thr926Met	p.T926M	ENST00000342788	NM_005235.2	926	aCg/aTg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39729871	39729871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			872	180	622	0	ENST00000361337.2:c.1186C>T	p.Pro396Ser	p.P396S	ENST00000361337	NM_003286.2	396	Cct/Tct																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120247	70120247	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs886043831		P-0060059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			830	246	723	0	ENST00000245479.2:c.1249C>T	p.Gln417Ter	p.Q417*	ENST00000245479	NM_000346.3	417	Cag/Tag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2135300	2135300	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745895675		P-0060059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			718	213	541	0	ENST00000219476.3:c.4639G>A	p.Val1547Ile	p.V1547I	ENST00000219476	NM_000548.3	1547	Gtc/Atc																																																																															
INSR	3643	MSKCC	GRCh37	19	7166398	7166398	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767160876		P-0060059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			822	62	594	0	ENST00000302850.5:c.1628C>T	p.Thr543Met	p.T543M	ENST00000302850	NM_000208.2	543	aCg/aTg																																																																															
CENPA	1058	MSKCC	GRCh37	2	27015660	27015660	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	231	612	0	ENST00000335756.4:c.247G>C	p.Asp83His	p.D83H	ENST00000335756	NM_001809.3	83	Gac/Cac																																																																															
APC	324	MSKCC	GRCh37	5	112175441	112175442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAGTCGTTCGATTGCC			P-0060059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	81	522	0	ENST00000257430.4:c.4151_4206dup	p.Ser1403LeufsTer31	p.S1403Lfs*31	ENST00000257430	NM_000038.5	1384	ttt/tTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAGTCGTTCGATTGCCtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0060109-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	128	484	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0060109-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	108	562	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37059000	37059000	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs63751448		P-0060109-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	101	412	0	ENST00000231790.2:c.794G>A	p.Arg265His	p.R265H	ENST00000231790	NM_000249.3	265	cGt/cAt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612352	1612352	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748738693		P-0060109-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	133	570	0	ENST00000344749.5:c.1667G>A	p.Arg556Gln	p.R556Q	ENST00000344749	NM_001136139.2	556	cGg/cAg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982427	201982428	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0060109-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	155	580	0	ENST00000359651.3:c.805+2dup		p.X269_splice	ENST00000359651		269																																																																																
USP8	9101	MSKCC	GRCh37	15	50782672	50782672	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060109-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	142	585	0	ENST00000307179.4:c.2184G>T	p.Glu728Asp	p.E728D	ENST00000307179		728	gaG/gaT																																																																															
NF1	4763	MSKCC	GRCh37	17	29654517	29654517	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0060109-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	106	386	0	ENST00000358273.4:c.5269G>A	p.Val1757Ile	p.V1757I	ENST00000358273	NM_001042492.2	1757	Gtt/Att																																																																															
APC	324	MSKCC	GRCh37	5	112175023	112175026	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0060109-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	80	397	0	ENST00000257430.4:c.3732_3735del	p.Lys1245LeufsTer19	p.K1245Lfs*19	ENST00000257430	NM_000038.5	1244	caAAAG/ca																																																																															
MET	4233	MSKCC	GRCh37	7	116398538	116398539	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATA			P-0060109-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	78	392	0	ENST00000397752.3:c.2129_2131dup	p.Tyr710_Thr711insAsn	p.Y710_T711insN	ENST00000397752	NM_000245.2	710	tat/tATAat																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429978	78429978	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			432	128	322	1	ENST00000370768.2:c.901del	p.Ile301TyrfsTer22	p.I301Yfs*22	ENST00000370768	NM_003902.3	301	Ata/ta																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			886	231	857	3	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			213	69	265	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435291	110435291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			951	224	1233	0	ENST00000375856.3:c.3110C>T	p.Ala1037Val	p.A1037V	ENST00000375856	NM_003749.2	1037	gCc/gTc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349641	89349641	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1064796815		P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			627	165	584	5	ENST00000301030.4:c.3309del	p.Asp1104MetfsTer214	p.D1104Mfs*214	ENST00000301030	NM_001256183.1	1103	aaA/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			595	176	616	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514302	69514302	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1255340343		P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			782	211	806	0	ENST00000294312.3:c.379C>T	p.Arg127Cys	p.R127C	ENST00000294312	NM_005117.2	127	Cgc/Tgc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29004242	29004242	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766441216		P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			715	133	525	0	ENST00000282397.4:c.1051C>T	p.Arg351Trp	p.R351W	ENST00000282397	NM_002019.4	351	Cgg/Tgg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435612	110435612	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1240327417		P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			729	174	914	0	ENST00000375856.3:c.2789G>A	p.Arg930His	p.R930H	ENST00000375856	NM_003749.2	930	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			219	68	308	0	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112173902	112173902	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			682	174	539	0	ENST00000257430.4:c.2612del	p.Gly871GlufsTer45	p.G871Efs*45	ENST00000257430	NM_000038.5	871	Gga/ga																																																																															
MGA	23269	MSKCC	GRCh37	15	42052626	42052626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			843	247	805	0	ENST00000219905.7:c.7297C>T	p.Arg2433Trp	p.R2433W	ENST00000219905	NM_001164273.1	2433	Cgg/Tgg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	364637	364637	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774810442		P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			766	201	844	0	ENST00000262320.3:c.925G>A	p.Gly309Ser	p.G309S	ENST00000262320	NM_003502.3	309	Ggc/Agc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			591	145	524	4	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			922	232	1195	1	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286254	66286255	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			302	49	283	0	ENST00000273854.3:c.1431dup	p.Gly478ArgfsTer26	p.G478Rfs*26	ENST00000273854	NM_004439.5	477	-/A																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2096314	2096314	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767591879		P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			758	193	840	1	ENST00000219066.1:c.193C>T	p.Arg65Cys	p.R65C	ENST00000219066	NM_002528.5	65	Cgt/Tgt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43699735	43699735	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137879443		P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			814	251	765	2	ENST00000382044.4:c.5780C>T	p.Thr1927Met	p.T1927M	ENST00000382044	NM_001141980.1	1927	aCg/aTg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24133959	24133959	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs398122368		P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			725	173	684	1	ENST00000263121.7:c.110G>A	p.Arg37His	p.R37H	ENST00000263121	NM_003073.3	37	cGt/cAt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860074	57860075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs774148738		P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			887	158	902	1	ENST00000228682.2:c.821dup	p.Cys275LeufsTer32	p.C275Lfs*32	ENST00000228682	NM_005269.2	272	tgg/tGgg																																																																															
TP63	8626	MSKCC	GRCh37	3	189526312	189526312	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			961	244	1027	0	ENST00000264731.3:c.576G>A	p.Trp192Ter	p.W192*	ENST00000264731	NM_003722.4	192	tgG/tgA																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324717	31324717	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			108	34	157	0	ENST00000412585.2:c.91T>C	p.Tyr31His	p.Y31H	ENST00000412585	NM_005514.6	31	Tat/Cat																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38272113	38272113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			701	193	756	0	ENST00000425967.3:c.2105C>T	p.Ala702Val	p.A702V	ENST00000425967	NM_001174067.1	702	gCa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			352	91	290	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			994	217	1078	2	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007298	143007298	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs199647396		P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			292	45	244	1	ENST00000262992.4:c.2486C>T	p.Thr829Met	p.T829M	ENST00000262992	NM_001101669.1	829	aCg/aTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70446263	70446263	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1282920941		P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			832	209	805	0	ENST00000373644.4:c.5203G>A	p.Glu1735Lys	p.E1735K	ENST00000373644	NM_030625.2	1735	Gag/Aag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911540	114911540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			582	153	521	0	ENST00000543371.1:c.1058C>T	p.Pro353Leu	p.P353L	ENST00000543371	NM_001198531.1	353	cCt/cTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425109	49425109	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			878	219	1103	0	ENST00000301067.7:c.13379A>G	p.His4460Arg	p.H4460R	ENST00000301067	NM_003482.3	4460	cAt/cGt																																																																															
RB1	5925	MSKCC	GRCh37	13	49039420	49039420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			476	167	425	0	ENST00000267163.4:c.2405G>T	p.Gly802Val	p.G802V	ENST00000267163	NM_000321.2	802	gGg/gTg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988220	36988220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749580337		P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			661	203	851	0	ENST00000354822.5:c.433G>A	p.Gly145Ser	p.G145S	ENST00000354822	NM_001079668.2	145	Ggc/Agc																																																																															
NF1	4763	MSKCC	GRCh37	17	29701105	29701105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771006452		P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			720	206	700	0	ENST00000358273.4:c.8452G>A	p.Ala2818Thr	p.A2818T	ENST00000358273	NM_001042492.2	2818	Gca/Aca																																																																															
RARA	5914	MSKCC	GRCh37	17	38511573	38511573	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			719	215	874	0	ENST00000254066.5:c.1071G>T	p.Glu357Asp	p.E357D	ENST00000254066	NM_000964.3	357	gaG/gaT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224045	36224045	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			879	213	1072	0	ENST00000222270.7:c.6595C>T	p.Gln2199Ter	p.Q2199*	ENST00000222270	NM_014727.1	2199	Caa/Taa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47707965	47707965	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	98	327	0	ENST00000233146.2:c.2589T>G	p.Tyr863Ter	p.Y863*	ENST00000233146	NM_000251.2	863	taT/taG																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52595963	52595963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			740	181	613	0	ENST00000394830.3:c.3952G>T	p.Gly1318Cys	p.G1318C	ENST00000394830	NM_018313.4	1318	Ggc/Tgc																																																																															
BCL6	604	MSKCC	GRCh37	3	187444651	187444651	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772115541		P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			792	215	862	0	ENST00000232014.4:c.1576C>T	p.Arg526Cys	p.R526C	ENST00000232014	NM_001130845.1	526	Cgc/Tgc																																																																															
TERT	7015	MSKCC	GRCh37	5	1296259	1296259	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			783	225	920	0				ENST00000310581	NM_198253.2																																																																																	
RASA1	5921	MSKCC	GRCh37	5	86627187	86627187	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			531	163	459	0	ENST00000274376.6:c.562A>G	p.Arg188Gly	p.R188G	ENST00000274376	NM_002890.2	188	Aga/Gga																																																																															
APC	324	MSKCC	GRCh37	5	112175776	112175789	+	frameshift_variant	Frame_Shift_Del	DEL	TACTCCAGATGGAT	TACTCCAGATGGAT	-			P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			746	179	577	0	ENST00000257430.4:c.4486_4499del	p.Thr1496PhefsTer13	p.T1496Ffs*13	ENST00000257430	NM_000038.5	1495	agTACTCCAGATGGATtt/agtt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141542669	141542669	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777477236		P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			707	206	775	0	ENST00000220592.5:c.2317C>T	p.Arg773Cys	p.R773C	ENST00000220592	NM_012154.3	773	Cgt/Tgt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485313	8485313	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			288	73	232	0	ENST00000356435.5:c.3067A>T	p.Asn1023Tyr	p.N1023Y	ENST00000356435		1023	Aat/Tat																																																																															
ATRX	546	MSKCC	GRCh37	X	76855228	76855228	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			70	53	79	0	ENST00000373344.5:c.5759T>C	p.Met1920Thr	p.M1920T	ENST00000373344	NM_000489.3	1920	aTg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs876659675		P-0060206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	214	461	0	ENST00000269305.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTc/aCc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	10	313	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591925	48591925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	44	476	0	ENST00000342988.3:c.1088G>T	p.Cys363Phe	p.C363F	ENST00000342988	NM_005359.5	363	tGt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0060206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	117	273	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150923064	150923064	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	120	474	0	ENST00000271640.5:c.1711C>G	p.Leu571Val	p.L571V	ENST00000271640	NM_001145415.1	571	Ctt/Gtt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649861	88649861	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0060206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	59	207	0	ENST00000372037.3:c.110C>A	p.Ser37Ter	p.S37*	ENST00000372037	NM_004329.2	37	tCa/tAa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440705	56440706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0060206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	265	562	0	ENST00000407977.2:c.512dup	p.Leu172AlafsTer16	p.L172Afs*16	ENST00000407977		171	aag/aaAg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731199	162731199	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	294	621	0	ENST00000367921.3:c.1054T>G	p.Phe352Val	p.F352V	ENST00000367921	NM_006182.2	352	Ttt/Gtt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435567	18435567	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	180	480	0	ENST00000266497.5:c.552T>G	p.Ser184Arg	p.S184R	ENST00000266497		184	agT/agG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0060258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	122	361	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357108	89357108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs900210533		P-0060258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			976	167	762	0	ENST00000301030.4:c.526G>A	p.Ala176Thr	p.A176T	ENST00000301030	NM_001256183.1	176	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0060258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	377	708	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0060258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	286	530	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2985473	2985473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	218	465	0	ENST00000396946.4:c.338G>A	p.Arg113Gln	p.R113Q	ENST00000396946	NM_032415.4	113	cGg/cAg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786928	135786928	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373454700		P-0060258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	117	460	0	ENST00000298552.3:c.941C>T	p.Thr314Met	p.T314M	ENST00000298552	NM_001162426.1	314	aCg/aTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0060379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	131	475	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0060379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			969	56	766	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45394805	45394805	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0060379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	175	531	1	ENST00000262160.6:c.544C>T	p.Arg182Ter	p.R182*	ENST00000262160	NM_005901.5	182	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578509	7578509	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519978		P-0060379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			860	81	970	0	ENST00000269305.4:c.421T>C	p.Cys141Arg	p.C141R	ENST00000269305	NM_001126112.2	141	Tgc/Cgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0060379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	218	876	0	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0060379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	101	370	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175541	112175544	+	frameshift_variant	Frame_Shift_Del	DEL	TTAT	TTAT	-			P-0060379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	517	816	0	ENST00000257430.4:c.4250_4253del	p.Ile1417LysfsTer55	p.I1417Kfs*55	ENST00000257430	NM_000038.5	1417	aTTATa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0060381-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	57	697	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0060381-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			798	112	802	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0060381-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	24	184	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120511	94120511	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060381-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	49	599	0	ENST00000369303.4:c.540G>T	p.Lys180Asn	p.K180N	ENST00000369303	NM_004440.3	180	aaG/aaT																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5215422	5215422	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0060381-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	137	897	0	ENST00000357368.4:c.4196C>A	p.Ser1399Tyr	p.S1399Y	ENST00000357368	NM_002850.3	1399	tCc/tAc																																																																															
TP63	8626	MSKCC	GRCh37	3	189612244	189612244	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060381-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			747	51	808	0	ENST00000264731.3:c.1996G>T	p.Asp666Tyr	p.D666Y	ENST00000264731	NM_003722.4	666	Gat/Tat																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858097	152858097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060381-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	69	400	0	ENST00000406277.2:c.518G>A	p.Arg173Gln	p.R173Q	ENST00000406277	NM_152274.4	173	cGg/cAg																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39317337	39317337	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0060385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	69	393	0	ENST00000373001.3:c.849A>T	p.Glu283Asp	p.E283D	ENST00000373001	NM_022157.3	283	gaA/gaT																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233129	69233129	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	87	746	1	ENST00000462284.1:c.994C>A	p.Arg332Ser	p.R332S	ENST00000462284	NM_002392.5	332	Cgt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0060385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	242	1097	6	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522557	67522559	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0060385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	35	605	0	ENST00000274335.5:c.60_62del	p.Glu20del	p.E20del	ENST00000274335		18	agAGAa/aga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151841931	151841931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			954	190	827	0	ENST00000262189.6:c.14210C>T	p.Ser4737Leu	p.S4737L	ENST00000262189	NM_170606.2	4737	tCa/tTa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	19	637	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			813	122	859	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1129	127	1076	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1051	61	909	0	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			965	82	694	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578213	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	41	694	0	ENST00000269305.4:c.636dup	p.Arg213SerfsTer3	p.R213Sfs*3	ENST00000269305	NM_001126112.2	212	-/T																																																																															
SMO	6608	MSKCC	GRCh37	7	128843396	128843396	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61746143		P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			732	73	702	0	ENST00000249373.3:c.503G>A	p.Arg168His	p.R168H	ENST00000249373	NM_005631.4	168	cGc/cAc																																																																															
AXL	558	MSKCC	GRCh37	19	41727909	41727909	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			834	91	667	0	ENST00000301178.4:c.538del	p.Leu180TrpfsTer18	p.L180Wfs*18	ENST00000301178	NM_021913.4	178	gtC/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	86	803	1	ENST00000407977.2:c.349del	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742547	145742547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1426829329		P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1153	77	756	0	ENST00000428558.2:c.241del	p.His81IlefsTer2	p.H81Ifs*2	ENST00000428558	NM_004260.3	81	Cat/at																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272336	15272337	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs771517374		P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1198	115	1015	4	ENST00000263388.2:c.6102dup	p.Gly2035ArgfsTer60	p.G2035Rfs*60	ENST00000263388	NM_000435.2	2034	-/C																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	35	574	0	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1024	58	808	0	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285059	15285059	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs367543285		P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1177	161	806	0	ENST00000263388.2:c.4556T>C	p.Leu1519Pro	p.L1519P	ENST00000263388	NM_000435.2	1519	cTg/cCg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340356	8340356	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs553232071		P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	37	605	0	ENST00000356435.5:c.5240G>A	p.Arg1747His	p.R1747H	ENST00000356435		1747	cGt/cAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42793430	42793430	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144065857		P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1155	70	914	1	ENST00000575354.2:c.1232C>T	p.Ala411Val	p.A411V	ENST00000575354	NM_015125.3	411	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1095	63	1029	3	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272238	15272238	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs760917811		P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			901	102	884	0	ENST00000263388.2:c.6201del	p.Lys2069ArgfsTer16	p.K2069Rfs*16	ENST00000263388	NM_000435.2	2067	ccC/cc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46267849	46267849	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			83	15	435	0	ENST00000371998.3:c.2615del	p.Asn872IlefsTer20	p.N872Ifs*20	ENST00000371998		870	gtA/gt																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870055	40870055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			55	10	400	0	ENST00000428826.2:c.962G>A	p.Arg321His	p.R321H	ENST00000428826		321	cGc/cAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299864	15299864	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1255	96	829	0	ENST00000263388.2:c.1314del	p.Cys440AlafsTer11	p.C440Afs*11	ENST00000263388	NM_000435.2	438	ggG/gg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50921136	50921136	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs963136799		P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			833	48	542	2	ENST00000440232.2:c.3256C>T	p.Arg1086Trp	p.R1086W	ENST00000440232	NM_002691.3	1086	Cgg/Tgg																																																																															
CASP8	841	MSKCC	GRCh37	2	202149917	202149917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	19	708	0	ENST00000358485.4:c.1358C>A	p.Pro453Gln	p.P453Q	ENST00000358485	NM_001080125.1	453	cCg/cAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045909	47045909	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782208940		P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	39	533	0	ENST00000329236.7:c.2470C>T	p.Arg824Trp	p.R824W	ENST00000329236	NM_001204466.1	824	Cgg/Tgg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2103374	2103374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1369594860		P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			877	113	503	0	ENST00000219476.3:c.257C>T	p.Ala86Val	p.A86V	ENST00000219476	NM_000548.3	86	gCg/gTg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150923861	150923864	+	frameshift_variant	Frame_Shift_Del	DEL	AACT	AACT	-			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	15	573	0	ENST00000271640.5:c.2239_2242del	p.Thr747SerfsTer23	p.T747Sfs*23	ENST00000271640	NM_001145415.1	745	cAACTa/ca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258786	16258786	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	50	862	0	ENST00000375759.3:c.6053del	p.Gly2018AlafsTer4	p.G2018Afs*4	ENST00000375759	NM_015001.2	2017	gtG/gt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206647765	206647765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	64	606	0	ENST00000367120.3:c.179G>T	p.Arg60Leu	p.R60L	ENST00000367120	NM_014002.3	60	cGg/cTg																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205579	61205579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	17	392	0	ENST00000301761.2:c.364G>A	p.Ala122Thr	p.A122T	ENST00000301761	NM_017841.2	122	Gcc/Acc																																																																															
POLE	5426	MSKCC	GRCh37	12	133238184	133238184	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	17	580	0	ENST00000320574.5:c.2793del	p.Phe931LeufsTer10	p.F931Lfs*10	ENST00000320574	NM_006231.2	931	ttT/tt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563414	21563414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			981	127	818	1	ENST00000382592.4:c.505C>T	p.Arg169Trp	p.R169W	ENST00000382592	NM_014572.2	169	Cgg/Tgg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778113	3778113	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1386	112	1014	2	ENST00000262367.5:c.6935A>G	p.Asn2312Ser	p.N2312S	ENST00000262367	NM_004380.2	2312	aAc/aGc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900351	3900351	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			839	72	749	0	ENST00000262367.5:c.745C>T	p.Gln249Ter	p.Q249*	ENST00000262367	NM_004380.2	249	Caa/Taa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78896523	78896523	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			921	105	592	0	ENST00000306801.3:c.2521-1G>T		p.X841_splice	ENST00000306801	NM_020761.2	841																																																																																
CD79A	973	MSKCC	GRCh37	19	42383266	42383266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1019	62	852	0	ENST00000221972.3:c.286G>A	p.Val96Met	p.V96M	ENST00000221972	NM_021601.3	96	Gtg/Atg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086185	16086185	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	28	652	0	ENST00000281043.3:c.1361T>C	p.Leu454Ser	p.L454S	ENST00000281043	NM_005378.4	454	tTg/tCg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445547	29445550	+	frameshift_variant	Frame_Shift_Del	DEL	GCTT	GCTT	-			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			967	51	868	0	ENST00000544604.2:c.1382_1385del	p.Cys461SerfsTer108	p.C461Sfs*108	ENST00000544604	NM_001206998.1	460	GCTTgc/gc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430587	181430587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1302	159	902	0	ENST00000325404.1:c.439G>A	p.Ala147Thr	p.A147T	ENST00000325404	NM_003106.3	147	Gcc/Acc																																																																															
TP63	8626	MSKCC	GRCh37	3	189612116	189612116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			741	39	780	0	ENST00000264731.3:c.1868C>T	p.Ala623Val	p.A623V	ENST00000264731	NM_003722.4	623	gCc/gTc																																																																															
KIT	3815	MSKCC	GRCh37	4	55594037	55594037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	36	463	0	ENST00000288135.5:c.1823C>T	p.Ala608Val	p.A608V	ENST00000288135	NM_000222.2	608	gCt/gTt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324735	31324735	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1055758550		P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			790	67	763	0	ENST00000412585.2:c.74-1G>A		p.X25_splice	ENST00000412585	NM_005514.6	25																																																																																
EPHA7	2045	MSKCC	GRCh37	6	93969171	93969171	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	10	442	0	ENST00000369303.4:c.1825A>G	p.Ile609Val	p.I609V	ENST00000369303	NM_004440.3	609	Att/Gtt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129471	152129471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			840	105	661	2	ENST00000206249.3:c.424C>T	p.Arg142Cys	p.R142C	ENST00000206249	NM_000125.3	142	Cgc/Tgc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2983994	2983994	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	62	668	0	ENST00000396946.4:c.536G>T	p.Arg179Leu	p.R179L	ENST00000396946	NM_032415.4	179	cGg/cTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104664	69104664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	39	557	0	ENST00000288368.4:c.4508G>A	p.Cys1503Tyr	p.C1503Y	ENST00000288368	NM_024870.2	1503	tGc/tAc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342707	87342707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	30	519	0	ENST00000277120.3:c.992G>A	p.Cys331Tyr	p.C331Y	ENST00000277120		331	tGt/tAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47035898	47035898	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	75	266	0	ENST00000329236.7:c.346-1G>A		p.X116_splice	ENST00000329236	NM_001204466.1	116																																																																																
AR	367	MSKCC	GRCh37	X	66765536	66765536	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0060515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	100	481	0	ENST00000374690.3:c.548A>T	p.Asp183Val	p.D183V	ENST00000374690	NM_000044.3	183	gAc/gTc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467828	50467828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1040607869		P-0060516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1869	955	634	6	ENST00000331340.3:c.1063G>A	p.Ala355Thr	p.A355T	ENST00000331340	NM_006060.4	355	Gcg/Acg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578217	7578217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	494	612	5	ENST00000269305.4:c.632C>T	p.Thr211Ile	p.T211I	ENST00000269305	NM_001126112.2	211	aCt/aTt																																																																															
KIT	3815	MSKCC	GRCh37	4	55602973	55602973	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774405431		P-0060516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	29	342	0	ENST00000288135.5:c.2683G>A	p.Ala895Thr	p.A895T	ENST00000288135	NM_000222.2	895	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112175466	112175466	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs786204170		P-0060516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			64	115	403	2	ENST00000257430.4:c.4175C>A	p.Ser1392Ter	p.S1392*	ENST00000257430	NM_000038.5	1392	tCa/tAa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374979	45374980	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	TAC			P-0060516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	10	275	0	ENST00000262160.6:c.863_864insGTA	p.Glu288_Thr289insTer	p.E288_T289ins*	ENST00000262160	NM_005901.5	288	gaa/gaGTAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920444	114920444	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1219807932		P-0060516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	60	347	1	ENST00000543371.1:c.1385C>T	p.Pro462Leu	p.P462L	ENST00000543371	NM_001198531.1	462	cCg/cTg																																																																															
ATM	472	MSKCC	GRCh37	11	108122613	108122613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			41	19	240	1	ENST00000278616.4:c.1657G>A	p.Gly553Arg	p.G553R	ENST00000278616	NM_000051.3	553	Gga/Aga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533716	63533716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1851	1286	836	5	ENST00000307078.5:c.1438del	p.Leu480CysfsTer27	p.L480Cfs*27	ENST00000307078	NM_004655.3	480	Ctg/tg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5219960	5219960	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0060516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1052	218	555	0	ENST00000357368.4:c.3755A>T	p.Lys1252Met	p.K1252M	ENST00000357368	NM_002850.3	1252	aAg/aTg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2039776	2039777	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCAG	rs745316697		P-0060516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1755	489	733	1	ENST00000349721.2:c.702_707dup	p.Gln237_Gln238dup	p.Q237_Q238dup	ENST00000349721	NM_003070.3	237	-/CAGCAG																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0060552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	72	560	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0060552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	123	539	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276765	15276765	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs550464740		P-0060552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	63	689	0	ENST00000263388.2:c.5500C>T	p.Arg1834Trp	p.R1834W	ENST00000263388	NM_000435.2	1834	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0060552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	111	517	0	ENST00000269305.4:c.673-2A>C		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0060552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	108	338	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SUFU	51684	MSKCC	GRCh37	10	104356999	104356999	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	73	413	0	ENST00000369902.3:c.859G>T	p.Asp287Tyr	p.D287Y	ENST00000369902	NM_016169.3	287	Gac/Tac																																																																															
LMO1	4004	MSKCC	GRCh37	11	8246197	8246197	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	49	574	0	ENST00000335790.3:c.437A>C	p.Gln146Pro	p.Q146P	ENST00000335790	NM_002315.2	146	cAg/cCg																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544242	86544242	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	43	762	0	ENST00000262426.4:c.67G>C	p.Gly23Arg	p.G23R	ENST00000262426	NM_001451.2	23	Ggc/Cgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0060610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	176	506	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0060610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	263	358	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519946		P-0060654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	112	543	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67660469	67660469	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0060654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	28	345	2	ENST00000264010.4:c.1369C>T	p.Arg457Ter	p.R457*	ENST00000264010	NM_006565.3	457	Cga/Tga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0060654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	140	603	1	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0060654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	99	517	0	ENST00000257430.4:c.4391_4394del	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578397	7578397	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	148	599	0	ENST00000269305.4:c.533A>C	p.His178Pro	p.H178P	ENST00000269305	NM_001126112.2	178	cAc/cCc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879580	37879580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	134	474	0	ENST00000269571.5:c.1955C>T	p.Thr652Met	p.T652M	ENST00000269571		652	aCg/aTg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437518	52437518	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779877855		P-0060654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	133	585	0	ENST00000460680.1:c.1643G>A	p.Arg548His	p.R548H	ENST00000460680	NM_004656.3	548	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398255	25398255	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913236		P-0060654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	72	283	0	ENST00000256078.4:c.64C>A	p.Gln22Lys	p.Q22K	ENST00000256078	NM_033360.2	22	Cag/Aag																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918198	50918198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	78	597	0	ENST00000440232.2:c.2515C>T	p.Leu839Phe	p.L839F	ENST00000440232	NM_002691.3	839	Ctc/Ttc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0060713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	73	432	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0060713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			955	148	614	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940402	49940402	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760399844		P-0060713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			973	59	622	0	ENST00000296474.3:c.641G>A	p.Arg214His	p.R214H	ENST00000296474	NM_002447.2	214	cGc/cAc																																																																															
TEK	7010	MSKCC	GRCh37	9	27158132	27158132	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773256013		P-0060713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			966	121	608	1	ENST00000380036.4:c.356G>A	p.Arg119His	p.R119H	ENST00000380036	NM_000459.3	119	cGt/cAt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52597440	52597440	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0060713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			753	57	482	0	ENST00000394830.3:c.3870del	p.Lys1290AsnfsTer5	p.K1290Nfs*5	ENST00000394830	NM_018313.4	1290	aaA/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86658426	86658426	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776213397		P-0060713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	34	336	0	ENST00000274376.6:c.1391G>A	p.Arg464His	p.R464H	ENST00000274376	NM_002890.2	464	cGt/cAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133253974	133253974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61732929		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			408	75	374	0	ENST00000320574.5:c.776G>A	p.Arg259His	p.R259H	ENST00000320574	NM_006231.2	259	cGc/cAc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16024505	16024505	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			439	83	386	0	ENST00000268712.3:c.1713del	p.Arg572GlufsTer18	p.R572Efs*18	ENST00000268712	NM_006311.3	571	ggG/gg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	92	465	2	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	161	589	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			281	128	390	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			307	58	494	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	51	559	3	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	78	467	5	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	73	480	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			450	75	409	4	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730831	40730831	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372700928		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	56	451	0	ENST00000373198.4:c.3704G>A	p.Arg1235His	p.R1235H	ENST00000373198	NM_133170.3	1235	cGc/cAc																																																																															
CASP8	841	MSKCC	GRCh37	2	202136309	202136309	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			279	57	324	0	ENST00000358485.4:c.553G>T	p.Glu185Ter	p.E185*	ENST00000358485	NM_001080125.1	185	Gag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			282	58	348	10	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			430	92	527	1	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	56	451	4	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934243	49934243	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1407832113		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	74	508	1	ENST00000296474.3:c.2264del	p.Gly755ValfsTer19	p.G755Vfs*19	ENST00000296474	NM_002447.2	755	gGt/gt																																																																															
KDR	3791	MSKCC	GRCh37	4	55968597	55968597	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34038364		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			350	73	373	0	ENST00000263923.4:c.2066C>T	p.Thr689Met	p.T689M	ENST00000263923	NM_002253.2	689	aCg/aTg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020769	37020769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			349	45	369	0	ENST00000358127.4:c.76del	p.Val26PhefsTer3	p.V26Ffs*3	ENST00000358127	NM_001280556.1	26	Gtt/tt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851765	134851765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			313	65	474	0	ENST00000398015.3:c.1171G>A	p.Val391Ile	p.V391I	ENST00000398015	NM_004441.4	391	Gtc/Atc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467064	25467064	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759818409		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			294	60	473	1	ENST00000264709.3:c.1811G>A	p.Arg604Gln	p.R604Q	ENST00000264709	NM_175629.2	604	cGg/cAg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			313	67	410	1	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413100	139413100	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201236538		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			330	68	466	0	ENST00000277541.6:c.1042G>A	p.Ala348Thr	p.A348T	ENST00000277541	NM_017617.3	348	Gcc/Acc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729888	41729888	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1043609570		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			288	118	405	0	ENST00000242208.4:c.641G>A	p.Arg214Gln	p.R214Q	ENST00000242208	NM_002192.2	214	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249361	153249361	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			286	62	307	2	ENST00000281708.4:c.1417del	p.Arg473GlufsTer25	p.R473Efs*25	ENST00000281708	NM_033632.3	473	Aga/ga																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740727	58740727	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			458	96	459	2	ENST00000305921.3:c.1636del	p.Leu546Ter	p.L546*	ENST00000305921	NM_003620.3	544	ggC/gg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1297203260		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			188	146	452	0	ENST00000245479.2:c.916del	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279922	18279922	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1254390009		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			248	41	377	0	ENST00000222254.8:c.2005G>A	p.Val669Ile	p.V669I	ENST00000222254	NM_005027.3	669	Gtc/Atc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306553	41306553	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	35	342	0	ENST00000373198.4:c.1106del	p.Gly369ValfsTer28	p.G369Vfs*28	ENST00000373198	NM_133170.3	369	gGt/gt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538257	9538257	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs746240534		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			377	75	384	0	ENST00000353224.5:c.1741C>T	p.Arg581Trp	p.R581W	ENST00000353224	NM_177990.2	581	Cgg/Tgg																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872552	136872552	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145335491		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			407	88	431	1	ENST00000241393.3:c.946G>A	p.Ala316Thr	p.A316T	ENST00000241393	NM_003467.2	316	Gca/Aca																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			339	110	272	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	64	431	1	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			310	142	590	0	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140309	50140309	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755565332		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			289	76	394	0	ENST00000246792.3:c.232C>T	p.Arg78Trp	p.R78W	ENST00000246792	NM_006270.3	78	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	89	549	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731468	47731468	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1284528511		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			234	29	386	0	ENST00000449228.1:c.324del	p.Phe109SerfsTer120	p.F109Sfs*120	ENST00000449228	NM_001127240.2	108	ggG/gg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350532	15350532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748633137		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			186	46	374	0	ENST00000263377.2:c.3383C>T	p.Ser1128Leu	p.S1128L	ENST00000263377	NM_058243.2	1128	tCg/tTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039374	47039374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			311	64	425	0	ENST00000329236.7:c.766G>A	p.Val256Ile	p.V256I	ENST00000329236	NM_001204466.1	256	Gtc/Atc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42842590	42842590	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs771443342		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			282	63	367	0	ENST00000398585.3:c.1267del	p.Ala423ProfsTer12	p.A423Pfs*12	ENST00000398585	NM_001135099.1	423	Gcc/cc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948747	71948748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs760925109		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			279	64	567	5	ENST00000298229.2:c.3466dup	p.Arg1156ProfsTer59	p.R1156Pfs*59	ENST00000298229	NM_001567.3	1153	-/C																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133898	41133898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			332	68	456	0	ENST00000379561.5:c.1730del	p.Gly577AlafsTer5	p.G577Afs*5	ENST00000379561	NM_002015.3	577	gGc/gc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712796	43712796	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs186678492		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			330	172	492	0	ENST00000382044.4:c.4388G>A	p.Arg1463His	p.R1463H	ENST00000382044	NM_001141980.1	1463	cGt/cAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231497	5231497	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200771602		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			260	61	406	0	ENST00000357368.4:c.1979C>T	p.Pro660Leu	p.P660L	ENST00000357368	NM_002850.3	660	cCg/cTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349179	89349180	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-	rs886039477		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			417	87	448	0	ENST00000301030.4:c.3770_3771del	p.Lys1257ArgfsTer25	p.K1257Rfs*25	ENST00000301030	NM_001256183.1	1257	aAA/a																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797114	45797114	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780084		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			356	57	538	0	ENST00000372115.3:c.1259C>T	p.Thr420Met	p.T420M	ENST00000372115	NM_001048171.1	420	aCg/aTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106164884	106164884	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1339287432		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			300	61	314	0	ENST00000380013.4:c.3752C>T	p.Thr1251Met	p.T1251M	ENST00000380013	NM_001127208.2	1251	aCg/aTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266670	41266670	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			425	87	395	0	ENST00000349496.5:c.467T>C	p.Leu156Pro	p.L156P	ENST00000349496	NM_001904.3	156	cTg/cCg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521157	187521157	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373469759		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			328	73	395	0	ENST00000441802.2:c.11998G>A	p.Glu4000Lys	p.E4000K	ENST00000441802	NM_005245.3	4000	Gaa/Aaa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981862	201981862	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	62	475	0	ENST00000359651.3:c.573del	p.Gly192AlafsTer62	p.G192Afs*62	ENST00000359651		191	ccT/cc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131276	17131276	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374969279		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			370	63	445	0	ENST00000285071.4:c.176G>A	p.Arg59His	p.R59H	ENST00000285071	NM_144997.5	59	cGt/cAt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258735	16258735	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			446	72	553	0	ENST00000375759.3:c.6005del	p.Asn2002MetfsTer20	p.N2002Mfs*20	ENST00000375759	NM_015001.2	2000	ggA/gg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526647	106526648	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			328	121	344	0	ENST00000359195.3:c.2946_2947del	p.Arg982SerfsTer8	p.R982Sfs*8	ENST00000359195	NM_002649.2	980	aaAGag/aaag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37872067	37872067	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	49	541	0	ENST00000269571.5:c.1388G>A	p.Ser463Asn	p.S463N	ENST00000269571		463	aGt/aAt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10246525	10246525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			255	46	334	0	ENST00000340748.4:c.4612C>T	p.Arg1538Cys	p.R1538C	ENST00000340748		1538	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216693	36216693	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765981100		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	58	498	0	ENST00000222270.7:c.3859C>T	p.Arg1287Trp	p.R1287W	ENST00000222270	NM_014727.1	1287	Cgg/Tgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630539	187630539	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			480	118	431	0	ENST00000441802.2:c.443T>C	p.Leu148Ser	p.L148S	ENST00000441802	NM_005245.3	148	tTa/tCa																																																																															
MAD2L2	10459	MSKCC	GRCh37	1	11736959	11736959	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151024263		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			313	45	390	0	ENST00000235310.3:c.278G>A	p.Arg93His	p.R93H	ENST00000235310		93	cGc/cAc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424841	47424841	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			417	104	422	1	ENST00000404338.3:c.2914del	p.Arg972GlyfsTer55	p.R972Gfs*55	ENST00000404338	NM_004491.4	970	tCc/tc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107045	27107045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	87	526	0	ENST00000324856.7:c.6656A>G	p.Gln2219Arg	p.Q2219R	ENST00000324856	NM_006015.4	2219	cAg/cGg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981530	201981530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			289	57	394	0	ENST00000359651.3:c.445del	p.Ala149ProfsTer6	p.A149Pfs*6	ENST00000359651		148	atG/at																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115920	8115920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	58	503	1	ENST00000346208.3:c.1266G>A	p.Met422Ile	p.M422I	ENST00000346208		422	atG/atA																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852263	63852263	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1236991649		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			322	85	414	0	ENST00000279873.7:c.3041G>A	p.Arg1014His	p.R1014H	ENST00000279873	NM_032199.2	1014	cGc/cAc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482372	56482372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			329	76	403	0	ENST00000267101.3:c.920C>A	p.Pro307His	p.P307H	ENST00000267101	NM_001982.3	307	cCt/cAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133235901	133235901	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			353	64	606	1	ENST00000320574.5:c.3255G>T	p.Glu1085Asp	p.E1085D	ENST00000320574	NM_006231.2	1085	gaG/gaT																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30095735	30095736	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			280	24	235	0	ENST00000331968.5:c.1752dup	p.Pro585SerfsTer2	p.P585Sfs*2	ENST00000331968	NM_002742.2	584	-/T																																																																															
BLM	641	MSKCC	GRCh37	15	91326089	91326089	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			273	41	289	0	ENST00000355112.3:c.2593T>C	p.Tyr865His	p.Y865H	ENST00000355112	NM_000057.2	865	Tat/Cat																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396439	396439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			323	77	431	0	ENST00000262320.3:c.587del	p.Asn196ThrfsTer46	p.N196Tfs*46	ENST00000262320	NM_003502.3	196	aAc/ac																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138132	2138132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	60	546	0	ENST00000219476.3:c.5152C>T	p.His1718Tyr	p.H1718Y	ENST00000219476	NM_000548.3	1718	Cac/Tac																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30323853	30323853	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			240	67	258	0	ENST00000322652.5:c.1831A>G	p.Lys611Glu	p.K611E	ENST00000322652	NM_015355.2	611	Aaa/Gaa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554587	63554588	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			391	70	463	0	ENST00000307078.5:c.151_152del	p.Val51LeufsTer89	p.V51Lfs*89	ENST00000307078	NM_004655.3	51	GTc/c																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554665	63554665	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs746837986		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			428	119	497	0	ENST00000307078.5:c.74del	p.Pro25GlnfsTer51	p.P25Qfs*51	ENST00000307078	NM_004655.3	25	cCa/ca																																																																															
STK11	6794	MSKCC	GRCh37	19	1221303	1221303	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1461580063		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			317	57	476	0	ENST00000326873.7:c.826G>A	p.Gly276Ser	p.G276S	ENST00000326873	NM_000455.4	276	Ggc/Agc																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6216446	6216446	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1293851158		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			234	49	409	0	ENST00000252674.7:c.1277C>T	p.Ala426Val	p.A426V	ENST00000252674	NM_005934.3	426	gCc/gTc																																																																															
INSR	3643	MSKCC	GRCh37	19	7172380	7172380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			373	60	391	0	ENST00000302850.5:c.1189del	p.Ile397SerfsTer18	p.I397Sfs*18	ENST00000302850	NM_000208.2	397	Atc/tc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610585	10610585	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			311	47	510	0	ENST00000171111.5:c.125T>C	p.Val42Ala	p.V42A	ENST00000171111	NM_203500.1	42	gTg/gCg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121134	11121134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			370	69	421	0	ENST00000344626.4:c.2201T>C	p.Val734Ala	p.V734A	ENST00000344626	NM_003072.3	734	gTg/gCg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144468	11144468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			265	66	289	0	ENST00000344626.4:c.3800G>A	p.Gly1267Asp	p.G1267D	ENST00000344626	NM_003072.3	1267	gGc/gAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292526	15292526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			330	52	441	0	ENST00000263388.2:c.2653G>A	p.Ala885Thr	p.A885T	ENST00000263388	NM_000435.2	885	Gcc/Acc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47425335	47425335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			411	77	438	0	ENST00000404338.3:c.3403G>A	p.Asp1135Asn	p.D1135N	ENST00000404338	NM_004491.4	1135	Gac/Aac																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503884	47503884	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			294	61	405	1	ENST00000404338.3:c.4444del	p.Gln1482SerfsTer317	p.Q1482Sfs*317	ENST00000404338	NM_004491.4	1480	aCc/ac																																																																															
INHA	3623	MSKCC	GRCh37	2	220439418	220439418	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			246	49	387	0	ENST00000243786.2:c.271G>A	p.Ala91Thr	p.A91T	ENST00000243786	NM_002191.3	91	Gcc/Acc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660120	227660120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs544798746		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			348	87	532	0	ENST00000305123.5:c.3335G>A	p.Arg1112Gln	p.R1112Q	ENST00000305123	NM_005544.2	1112	cGg/cAg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662376	227662376	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770400020		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			289	62	460	0	ENST00000305123.5:c.1079G>A	p.Arg360Gln	p.R360Q	ENST00000305123	NM_005544.2	360	cGg/cAg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445079	89445079	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs752088339		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			312	56	415	0	ENST00000336596.2:c.1399A>G	p.Ile467Val	p.I467V	ENST00000336596	NM_005233.5	467	Ata/Gta																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1920141	1920141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1211896693		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			428	86	470	1	ENST00000382895.3:c.1201C>T	p.Arg401Trp	p.R401W	ENST00000382895	NM_133330.2	401	Cgg/Tgg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55138567	55138567	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			291	54	317	0	ENST00000257290.5:c.1244C>A	p.Ser415Ter	p.S415*	ENST00000257290	NM_006206.4	415	tCa/tAa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509124	66509124	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			225	34	269	0	ENST00000273854.3:c.203C>G	p.Thr68Ser	p.T68S	ENST00000273854	NM_004439.5	68	aCt/aGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532903	187533240	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGAGTATAAAATCTTCCGATTTAATCCTATGAAGACATAAAAACATGTCAAAAGATTTTAAATAAAAAAGTTTAACACTTTTTTTTTTTTTTGAGATGGAGTCTCCCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGTCCCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTGGCTGGGGTTACAGACACACTGTAATTTTTGTATTTTTATTAGAGACGGGGTTTCTCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCGTGATCCACCCGCCTCGGCCTCCCAAAGTGCCAGGATCCCAG	GTGAGTATAAAATCTTCCGATTTAATCCTATGAAGACATAAAAACATGTCAAAAGATTTTAAATAAAAAAGTTTAACACTTTTTTTTTTTTTTGAGATGGAGTCTCCCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGTCCCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTGGCTGGGGTTACAGACACACTGTAATTTTTGTATTTTTATTAGAGACGGGGTTTCTCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCGTGATCCACCCGCCTCGGCCTCCCAAAGTGCCAGGATCCCAG	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			303	32	341	0	ENST00000441802.2:c.9464-311_9490del		p.X3155_splice	ENST00000441802	NM_005245.3	3155																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31464359	31464359	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1339947335		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	54	345	0	ENST00000344624.3:c.2558G>A	p.Arg853His	p.R853H	ENST00000344624		853	cGt/cAt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38953135	38953135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	44	309	0	ENST00000357387.3:c.2849C>T	p.Pro950Leu	p.P950L	ENST00000357387	NM_152756.3	950	cCa/cTa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56170929	56170929	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748356370		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			423	77	424	0	ENST00000399503.3:c.1757G>A	p.Arg586His	p.R586H	ENST00000399503	NM_005921.1	586	cGt/cAt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86686632	86686634	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			304	59	309	0	ENST00000274376.6:c.3078_3080del	p.Leu1027del	p.L1027del	ENST00000274376	NM_002890.2	1026	CTT/-																																																																															
RASA1	5921	MSKCC	GRCh37	5	86686660	86686660	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	55	341	0	ENST00000274376.6:c.3108del	p.Lys1036AsnfsTer?	p.K1036Nfs*?	ENST00000274376	NM_002890.2	1035	cAa/ca																																																																															
APC	324	MSKCC	GRCh37	5	112179446	112179446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	81	429	0	ENST00000257430.4:c.8155G>A	p.Glu2719Lys	p.E2719K	ENST00000257430	NM_000038.5	2719	Gaa/Aaa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120454	94120455	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			407	76	431	0	ENST00000369303.4:c.596_597del	p.Lys199SerfsTer11	p.K199Sfs*11	ENST00000369303	NM_004440.3	199	aAA/a																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877054	151877054	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			486	87	450	0	ENST00000262189.6:c.7307del	p.Pro2436HisfsTer16	p.P2436Hfs*16	ENST00000262189	NM_170606.2	2436	cCa/ca																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738784	145738784	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs941552175		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			577	53	646	0	ENST00000428558.2:c.2281A>G	p.Met761Val	p.M761V	ENST00000428558	NM_004260.3	761	Atg/Gtg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101867574	101867574	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1264167074		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			123	20	198	0	ENST00000374994.4:c.91del	p.Ala31ArgfsTer19	p.A31Rfs*19	ENST00000374994	NM_004612.2	29	ccG/cc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797300	135797300	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs118203402		P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	82	393	0	ENST00000298552.3:c.569G>A	p.Arg190His	p.R190H	ENST00000298552	NM_001162426.1	190	cGc/cAc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15809109	15809109	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0060747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	67	369	0	ENST00000307771.7:c.94C>T	p.Gln32Ter	p.Q32*	ENST00000307771	NM_005089.3	32	Cag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0060888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	292	609	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579314	7579314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G	rs1057520003		P-0060888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	191	483	0	ENST00000269305.4:c.373A>C	p.Thr125Pro	p.T125P	ENST00000269305	NM_001126112.2	125	Acg/Ccg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591933	48591933	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	172	419	0	ENST00000342988.3:c.1096C>G	p.Gln366Glu	p.Q366E	ENST00000342988	NM_005359.5	366	Caa/Gaa																																																																															
NBN	4683	MSKCC	GRCh37	8	90958438	90958438	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	138	284	0	ENST00000265433.3:c.2000C>G	p.Ser667Cys	p.S667C	ENST00000265433	NM_002485.4	667	tCt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0060888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	135	266	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120502026	120502036	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGAGCAGAC	GGTGAGCAGAC	-			P-0060888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	29	341	0	ENST00000256646.2:c.2005_2015del	p.Val669ArgfsTer8	p.V669Rfs*8	ENST00000256646	NM_024408.3	669	GTCTGCTCACCa/a																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646222	3646222	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371325486		P-0060888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	136	479	0	ENST00000294008.3:c.1856C>T	p.Ala619Val	p.A619V	ENST00000294008	NM_032444.2	619	gCg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843552	3843552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	154	464	0	ENST00000262367.5:c.1051C>T	p.Arg351Cys	p.R351C	ENST00000262367	NM_004380.2	351	Cgc/Tgc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15383895	15383895	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200468125		P-0060888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	56	464	0	ENST00000263377.2:c.16G>A	p.Gly6Ser	p.G6S	ENST00000263377	NM_058243.2	6	Ggc/Agc																																																																															
ALK	238	MSKCC	GRCh37	2	29455223	29455223	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1194282326		P-0060888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	132	483	0	ENST00000389048.3:c.2579G>T	p.Arg860Ile	p.R860I	ENST00000389048	NM_004304.4	860	aGa/aTa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2949752	2949752	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1253214830		P-0060888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	98	371	0	ENST00000396946.4:c.3192G>C	p.Leu1064Phe	p.L1064F	ENST00000396946	NM_032415.4	1064	ttG/ttC																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372320	55372320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060891-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			636	126	612	0	ENST00000297316.4:c.1010C>T	p.Pro337Leu	p.P337L	ENST00000297316	NM_022454.3	337	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0060891-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			306	232	460	1	ENST00000269305.4:c.434T>A	p.Leu145Gln	p.L145Q	ENST00000269305	NM_001126112.2	145	cTg/cAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411719	63411719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060891-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			283	30	234	0	ENST00000330258.3:c.1448C>T	p.Ser483Leu	p.S483L	ENST00000330258	NM_152424.3	483	tCa/tTa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187719	11187719	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767904339		P-0060891-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			418	70	377	0	ENST00000361445.4:c.6178C>T	p.Arg2060Trp	p.R2060W	ENST00000361445	NM_004958.3	2060	Cgg/Tgg																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33680085	33680085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771227424		P-0060891-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			199	51	200	0	ENST00000308377.4:c.1996G>A	p.Val666Ile	p.V666I	ENST00000308377	NM_152270.3	666	Gtc/Atc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138461497	138461497	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060891-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			403	27	263	0	ENST00000289153.2:c.524C>G	p.Thr175Arg	p.T175R	ENST00000289153	NM_006219.2	175	aCa/aGa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549305	187549308	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TACC	TACC	-			P-0060891-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			362	77	303	0	ENST00000441802.2:c.4810_4810+3del		p.X1604_splice	ENST00000441802	NM_005245.3	1604																																																																																
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0060921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	185	455	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245524	153245524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	89	323	0	ENST00000281708.4:c.1667G>A	p.Ser556Asn	p.S556N	ENST00000281708	NM_033632.3	556	aGt/aAt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467988	50467988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	141	540	0	ENST00000331340.3:c.1223G>A	p.Arg408His	p.R408H	ENST00000331340	NM_006060.4	408	cGc/cAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1422891742		P-0060921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	104	363	0	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0060921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	245	255	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	420073	420075	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0060921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	227	446	0	ENST00000399788.2:c.3192_3194del	p.Lys1064del	p.K1064del	ENST00000399788	NM_001042603.1	1064	aaGAAt/aat																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120428	70120429	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0060921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	157	534	0	ENST00000245479.2:c.1431dup	p.Thr478HisfsTer100	p.T478Hfs*100	ENST00000245479	NM_000346.3	477	tac/taCc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45872365	45872365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			874	146	504	0	ENST00000391945.4:c.146C>T	p.Thr49Ile	p.T49I	ENST00000391945	NM_000400.3	49	aCa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0060922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	313	605	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	90	356	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129160	2129160	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs45465195		P-0060922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	155	506	0	ENST00000219476.3:c.3094C>T	p.Arg1032Ter	p.R1032*	ENST00000219476	NM_000548.3	1032	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821601	72821618	+	inframe_deletion	In_Frame_Del	DEL	CCGCCGCCGCCGCCGCCA	CCGCCGCCGCCGCCGCCA	-	rs778016374		P-0060922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	158	555	0	ENST00000268489.5:c.10557_10574del	p.Gly3522_Gly3527del	p.G3522_G3527del	ENST00000268489	NM_006885.3	3519	ggTGGCGGCGGCGGCGGCGGc/ggc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169985715	169985715	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs567380681		P-0060922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	72	316	0	ENST00000295797.4:c.377G>A	p.Arg126His	p.R126H	ENST00000295797	NM_002740.5	126	cGt/cAt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260809	16260809	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765749217		P-0060922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			753	145	665	0	ENST00000375759.3:c.8074G>A	p.Val2692Ile	p.V2692I	ENST00000375759	NM_015001.2	2692	Gtc/Atc																																																																															
HIST2H3D	653604	MSKCC	GRCh37	1	149784893	149784893	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782390772		P-0060922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	29	173	0	ENST00000331491.1:c.344C>T	p.Ala115Val	p.A115V	ENST00000331491	NM_001123375.2	115	gCc/gTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250877	153250878	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0060922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	85	285	0	ENST00000281708.4:c.1182dup	p.Val395SerfsTer2	p.V395Sfs*2	ENST00000281708	NM_033632.3	394	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0061182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	360	587	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0061182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	338	450	2	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857727	9857727	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0061182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1073	205	573	0	ENST00000330684.3:c.3674C>G	p.Ser1225Ter	p.S1225*	ENST00000330684	NM_001134407.1	1225	tCa/tGa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93974372	93974372	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	29	252	0	ENST00000369303.4:c.1682T>A	p.Val561Asp	p.V561D	ENST00000369303	NM_004440.3	561	gTt/gAt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099315	157099315	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs372726215		P-0061182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			846	170	557	1	ENST00000346085.5:c.252C>G	p.His84Gln	p.H84Q	ENST00000346085	NM_020732.3	84	caC/caG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913240		P-0061182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	190	296	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982101	201982102	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0061182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			768	157	564	0	ENST00000359651.3:c.627dup	p.Ser210LeufsTer7	p.S210Lfs*7	ENST00000359651		209	tcc/tCcc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63938116	63938116	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	94	340	0	ENST00000295900.6:c.456C>G	p.Asp152Glu	p.D152E	ENST00000295900	NM_000333.3	152	gaC/gaG																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628434	187628434	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs757406003		P-0061182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			930	108	560	0	ENST00000441802.2:c.2548G>C	p.Asp850His	p.D850H	ENST00000441802	NM_005245.3	850	Gac/Cac																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876439	35876439	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	153	503	0	ENST00000303115.3:c.1231A>T	p.Thr411Ser	p.T411S	ENST00000303115	NM_002185.3	411	Aca/Tca																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126715	5126715	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0061182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	44	300	0	ENST00000381652.3:c.3323A>C	p.Asn1108Thr	p.N1108T	ENST00000381652	NM_004972.3	1108	aAt/aCt																																																																															
ATRX	546	MSKCC	GRCh37	X	76855241	76855241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	54	252	0	ENST00000373344.5:c.5746G>A	p.Asp1916Asn	p.D1916N	ENST00000373344	NM_000489.3	1916	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579575	7579575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0061192-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			94	535	691	0	ENST00000269305.4:c.112C>T	p.Gln38Ter	p.Q38*	ENST00000269305	NM_001126112.2	38	Caa/Taa																																																																															
SYK	6850	MSKCC	GRCh37	9	93624526	93624526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061192-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	277	572	0	ENST00000375746.1:c.617G>T	p.Cys206Phe	p.C206F	ENST00000375746	NM_001174167.1	206	tGc/tTc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068433	26068433	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0061192-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			17	119	150	0	ENST00000435504.4:c.58-1G>A		p.X20_splice	ENST00000435504		20																																																																																
STAG2	10735	MSKCC	GRCh37	X	123179075	123179075	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0061192-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	235	414	0	ENST00000218089.9:c.524T>A	p.Phe175Tyr	p.F175Y	ENST00000218089	NM_001042749.1	175	tTt/tAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0061196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	147	614	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434748	99434748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	42	610	1	ENST00000268035.6:c.835C>T	p.Arg279Cys	p.R279C	ENST00000268035	NM_000875.3	279	Cgt/Tgt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956723	68956723	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs750933833		P-0061196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	26	298	0	ENST00000288368.4:c.841C>T	p.Arg281Trp	p.R281W	ENST00000288368	NM_024870.2	281	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603057	48603076	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCACAAGCTGCAGCAGCT	CTGCACAAGCTGCAGCAGCT	-			P-0061196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	119	455	0	ENST00000342988.3:c.1358_1377del	p.Thr453SerfsTer34	p.T453Sfs*34	ENST00000342988	NM_005359.5	453	aCTGCACAAGCTGCAGCAGCT/a																																																																															
APC	324	MSKCC	GRCh37	5	112175698	112175722	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTGCAGTAAATGCTGCAGTTCAG	AGCTGCAGTAAATGCTGCAGTTCAG	-			P-0061196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	114	599	0	ENST00000257430.4:c.4409_4433del	p.Ala1470GlyfsTer29	p.A1470Gfs*29	ENST00000257430	NM_000038.5	1469	caAGCTGCAGTAAATGCTGCAGTTCAG/ca																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53231123	53231123	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	96	553	0	ENST00000375401.3:c.1779T>A	p.Phe593Leu	p.F593L	ENST00000375401	NM_004187.3	593	ttT/ttA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0061202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	89	447	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	38	484	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306602	41306602	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1419824411		P-0061202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	49	350	0	ENST00000373198.4:c.1057G>A	p.Asp353Asn	p.D353N	ENST00000373198	NM_133170.3	353	Gat/Aat																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859598	57859598	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1215799189		P-0061202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	77	576	0	ENST00000228682.2:c.652C>T	p.Arg218Trp	p.R218W	ENST00000228682	NM_005269.2	218	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420289	49420289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768551828		P-0061202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	51	517	2	ENST00000301067.7:c.15460C>T	p.Arg5154Trp	p.R5154W	ENST00000301067	NM_003482.3	5154	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0061202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	22	294	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MGA	23269	MSKCC	GRCh37	15	42052552	42052565	+	frameshift_variant	Frame_Shift_Del	DEL	ATTACTGGAGTGAC	ATTACTGGAGTGAC	-			P-0061202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	53	425	0	ENST00000219905.7:c.7224_7237del	p.Asp2408GlufsTer20	p.D2408Efs*20	ENST00000219905	NM_001164273.1	2408	gATTACTGGAGTGAC/g																																																																															
APC	324	MSKCC	GRCh37	5	112173905	112173906	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0061202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	39	461	0	ENST00000257430.4:c.2614_2615del	p.Thr872PhefsTer39	p.T872Ffs*39	ENST00000257430	NM_000038.5	872	ACt/t																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0061231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	85	577	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175096	112175097	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0061231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	130	477	0	ENST00000257430.4:c.3807_3808del	p.Ile1269MetfsTer6	p.I1269Mfs*6	ENST00000257430	NM_000038.5	1269	ATa/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0061231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	175	492	0	ENST00000269305.4:c.783-1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0061231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	81	331	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0061423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	141	393	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0061423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	39	382	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	121	455	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	136	417	0	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920413	114920413	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767830105		P-0061423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	151	354	0	ENST00000543371.1:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000543371	NM_001198531.1	452	Ggg/Agg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332919	153332919	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs781123562		P-0061423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	119	372	0	ENST00000281708.4:c.37C>T	p.Arg13Ter	p.R13*	ENST00000281708	NM_033632.3	13	Cga/Tga																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206649553	206649553	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147688366		P-0061423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	141	517	0	ENST00000367120.3:c.388G>A	p.Gly130Ser	p.G130S	ENST00000367120	NM_014002.3	130	Ggc/Agc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210586	5210586	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	134	520	0	ENST00000357368.4:c.5381G>T	p.Trp1794Leu	p.W1794L	ENST00000357368	NM_002850.3	1794	tGg/tTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55956187	55956187	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	110	376	0	ENST00000263923.4:c.3128A>G	p.Lys1043Arg	p.K1043R	ENST00000263923	NM_002253.2	1043	aAa/aGa																																																																															
APC	324	MSKCC	GRCh37	5	112173480	112173480	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0061423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	78	401	0	ENST00000257430.4:c.2189del	p.Met730ArgfsTer31	p.M730Rfs*31	ENST00000257430	NM_000038.5	730	aTg/ag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0061587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	64	441	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730882026		P-0061587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	86	455	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112173830	112173830	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	82	466	0	ENST00000257430.4:c.2539G>T	p.Glu847Ter	p.E847*	ENST00000257430	NM_000038.5	847	Gaa/Taa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727501	88727501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147992979		P-0061587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	79	570	0	ENST00000360948.2:c.278C>T	p.Thr93Met	p.T93M	ENST00000360948	NM_001012338.2	93	aCg/aTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42793183	42793183	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777585940		P-0061587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			753	112	695	0	ENST00000575354.2:c.1075G>A	p.Gly359Arg	p.G359R	ENST00000575354	NM_015125.3	359	Ggg/Agg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0061587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	51	303	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710522	114710522	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	99	490	0	ENST00000543371.1:c.7C>T	p.Gln3Ter	p.Q3*	ENST00000543371	NM_001198531.1	3	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0061666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	89	548	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057520006		P-0061666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	114	615	0	ENST00000269305.4:c.821T>A	p.Val274Asp	p.V274D	ENST00000269305	NM_001126112.2	274	gTt/gAt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467192	99467192	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	50	476	0	ENST00000268035.6:c.2573C>A	p.Pro858His	p.P858H	ENST00000268035	NM_000875.3	858	cCc/cAc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17127427	17127427	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	48	556	0	ENST00000285071.4:c.427T>C	p.Phe143Leu	p.F143L	ENST00000285071	NM_144997.5	143	Ttc/Ctc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370952	55370952	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs775421817		P-0061666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	118	569	0	ENST00000297316.4:c.254G>T	p.Arg85Leu	p.R85L	ENST00000297316	NM_022454.3	85	cGg/cTg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625120	69625120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782246758		P-0061880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	94	394	0	ENST00000334134.2:c.673G>A	p.Val225Ile	p.V225I	ENST00000334134	NM_005247.2	225	Gtt/Att																																																																															
CDC42	998	MSKCC	GRCh37	1	22412956	22412956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	60	181	0	ENST00000344548.3:c.203G>A	p.Arg68Gln	p.R68Q	ENST00000344548	NM_001039802.1	68	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0061880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	182	587	0	ENST00000269305.4:c.560-2A>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151849873	151849873	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141718495		P-0061880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	112	408	0	ENST00000262189.6:c.12443C>T	p.Pro4148Leu	p.P4148L	ENST00000262189	NM_170606.2	4148	cCg/cTg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984847	11984847	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0061880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	79	313	0	ENST00000353533.5:c.393A>T	p.Lys131Asn	p.K131N	ENST00000353533	NM_003010.3	131	aaA/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0061902-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	100	985	0	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426752	212426752	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0061902-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	81	770	0	ENST00000342788.4:c.2363T>G	p.Leu788Arg	p.L788R	ENST00000342788	NM_005235.2	788	cTg/cGg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117683975	117683975	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0061902-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	40	675	0	ENST00000368508.3:c.3172T>G	p.Cys1058Gly	p.C1058G	ENST00000368508	NM_002944.2	1058	Tgc/Ggc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0061957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	122	480	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0061957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	80	475	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508977	106508977	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760224981		P-0061957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	101	598	0	ENST00000359195.3:c.971C>T	p.Pro324Leu	p.P324L	ENST00000359195	NM_002649.2	324	cCa/cTa																																																																															
PGR	5241	MSKCC	GRCh37	11	100922241	100922241	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	46	304	0	ENST00000325455.5:c.2271C>A	p.Ser757Arg	p.S757R	ENST00000325455	NM_001202474.3	757	agC/agA																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128047264	128047264	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs56116802		P-0061957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	97	504	0	ENST00000285398.2:c.657+1G>A		p.X219_splice	ENST00000285398	NM_000122.1	219																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266645	41266645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	134	484	0	ENST00000349496.5:c.442C>T	p.Leu148Phe	p.L148F	ENST00000349496	NM_001904.3	148	Ctt/Ttt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499416	89499416	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	39	544	0	ENST00000336596.2:c.2586G>T	p.Gln862His	p.Q862H	ENST00000336596	NM_005233.5	862	caG/caT																																																																															
APC	324	MSKCC	GRCh37	5	112175112	112175113	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0061957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	48	459	0	ENST00000257430.4:c.3822_3823dup	p.Ser1275IlefsTer14	p.S1275Ifs*14	ENST00000257430	NM_000038.5	1274	tgt/tgTAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0062008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	30	485	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514495		P-0062008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			840	50	602	0	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0062008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	24	186	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	66	507	4	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106861	27106861	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			761	19	614	1	ENST00000324856.7:c.6472C>T	p.Arg2158Ter	p.R2158*	ENST00000324856	NM_006015.4	2158	Cga/Tga																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130441	29130441	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			752	43	572	0	ENST00000328354.6:c.269del	p.Pro90LeufsTer20	p.P90Lfs*20	ENST00000328354	NM_007194.3	90	cCt/ct																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874263	155874263	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	30	577	0	ENST00000368323.3:c.268A>G	p.Met90Val	p.M90V	ENST00000368323	NM_006912.5	90	Atg/Gtg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			806	50	662	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
CTCF	10664	MSKCC	GRCh37	16	67655479	67655479	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs769948988		P-0062008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	22	463	0	ENST00000264010.4:c.1342C>T	p.Arg448Ter	p.R448*	ENST00000264010	NM_006565.3	448	Cga/Tga																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343543	343543	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150504240		P-0062008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			716	38	586	0	ENST00000262320.3:c.2131C>T	p.Arg711Cys	p.R711C	ENST00000262320	NM_003502.3	711	Cgc/Tgc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11186702	11186702	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	37	485	0	ENST00000361445.4:c.6503G>T	p.Arg2168Met	p.R2168M	ENST00000361445	NM_004958.3	2168	aGg/aTg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26974597	26974597	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	27	384	0	ENST00000381527.3:c.941A>C	p.Lys314Thr	p.K314T	ENST00000381527	NM_001260.1	314	aAg/aCg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343542	343542	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769430411		P-0062008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	42	556	1	ENST00000262320.3:c.2132G>A	p.Arg711His	p.R711H	ENST00000262320	NM_003502.3	711	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827478	72827478	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs571460174		P-0062008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	44	520	0	ENST00000268489.5:c.9103G>A	p.Ala3035Thr	p.A3035T	ENST00000268489	NM_006885.3	3035	Gct/Act																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152049	11152049	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs558017726		P-0062008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			724	46	574	0	ENST00000344626.4:c.4237C>T	p.Arg1413Cys	p.R1413C	ENST00000344626	NM_003072.3	1413	Cgc/Tgc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067254	37067254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61751644		P-0062008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	37	459	0	ENST00000231790.2:c.1165C>T	p.Arg389Trp	p.R389W	ENST00000231790	NM_000249.3	389	Cgg/Tgg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933378	39933378	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	37	325	0	ENST00000378444.4:c.1221del	p.His409MetfsTer33	p.H409Mfs*33	ENST00000378444	NM_001123385.1	407	ccC/cc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11294235	11294235	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			751	152	524	0	ENST00000361445.4:c.2296del	p.Arg766AspfsTer11	p.R766Dfs*11	ENST00000361445	NM_004958.3	766	Cga/ga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			847	181	645	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106078	27106078	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			955	90	672	0	ENST00000324856.7:c.5693del	p.Pro1898HisfsTer25	p.P1898Hfs*25	ENST00000324856	NM_006015.4	1897	Ccc/cc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932859	36932859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	166	616	0	ENST00000361632.4:c.2012G>A	p.Gly671Asp	p.G671D	ENST00000361632		671	gGc/gAc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120469123	120469123	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C	rs746314617		P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	156	420	0	ENST00000256646.2:c.4004C>G	p.Pro1335Arg	p.P1335R	ENST00000256646	NM_024408.3	1335	cCg/cGg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193172983	193172983	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	114	393	0	ENST00000367435.3:c.1030+1G>A		p.X344_splice	ENST00000367435	NM_024529.4	344																																																																																
SPRTN	83932	MSKCC	GRCh37	1	231487256	231487256	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	142	490	1	ENST00000295050.7:c.663del	p.Gly222AlafsTer7	p.G222Afs*7	ENST00000295050	NM_032018.5	219	tcA/tc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692897	89692897	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	61	350	0	ENST00000371953.3:c.383del	p.Lys128ArgfsTer6	p.K128Rfs*6	ENST00000371953	NM_000314.4	127	ggA/gg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	66	301	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123310879	123310879	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1164513666		P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			870	178	574	1	ENST00000358487.5:c.549del	p.Asn184ThrfsTer9	p.N184Tfs*9	ENST00000358487	NM_000141.4	183	ggG/gg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577512	64577512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	146	608	0	ENST00000337652.1:c.70G>A	p.Ala24Thr	p.A24T	ENST00000337652	NM_130803.2	24	Gct/Act																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948208	71948208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			898	81	638	0	ENST00000298229.2:c.2920G>C	p.Ala974Pro	p.A974P	ENST00000298229	NM_001567.3	974	Gcc/Ccc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865628	57865628	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			818	194	694	0	ENST00000228682.2:c.3109del	p.Leu1037TrpfsTer23	p.L1037Wfs*23	ENST00000228682	NM_005269.2	1035	aaC/aa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			944	65	662	5	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121437355	121437355	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	164	615	0	ENST00000257555.6:c.1693C>A	p.Leu565Ile	p.L565I	ENST00000257555		565	Ctc/Atc																																																																															
MGA	23269	MSKCC	GRCh37	15	41991334	41991334	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	26	458	0	ENST00000219905.7:c.2165T>C	p.Val722Ala	p.V722A	ENST00000219905	NM_001164273.1	722	gTg/gCg																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	146	515	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			688	155	520	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799280	88799280	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	123	432	0	ENST00000360948.2:c.105T>A	p.Asn35Lys	p.N35K	ENST00000360948	NM_001012338.2	35	aaT/aaA																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			900	132	582	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			764	157	555	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7573009	7573009	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs876658982		P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			792	57	522	0	ENST00000269305.4:c.1101-1G>A		p.X367_splice	ENST00000269305	NM_001126112.2	367																																																																																
TP53	7157	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587781525		P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			880	155	602	0	ENST00000269305.4:c.842A>G	p.Asp281Gly	p.D281G	ENST00000269305	NM_001126112.2	281	gAc/gGc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30320963	30320963	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371166327		P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	76	379	1	ENST00000322652.5:c.1373G>A	p.Arg458His	p.R458H	ENST00000322652	NM_015355.2	458	cGc/cAc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362218	40362218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			760	102	522	0	ENST00000293328.3:c.1877G>A	p.Gly626Asp	p.G626D	ENST00000293328	NM_012448.3	626	gGc/gAc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	157	491	1	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	73	272	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78897434	78897434	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			970	208	756	0	ENST00000306801.3:c.2773del	p.Arg925GlyfsTer48	p.R925Gfs*48	ENST00000306801	NM_020761.2	923	ttC/tt																																																																															
GNA11	2767	MSKCC	GRCh37	19	3113463	3113463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			731	86	527	1	ENST00000078429.4:c.457C>A	p.Leu153Ile	p.L153I	ENST00000078429	NM_002067.2	153	Ctc/Atc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238945	5238945	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745665862		P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			712	161	601	1	ENST00000357368.4:c.1834C>T	p.Arg612Cys	p.R612C	ENST00000357368	NM_002850.3	612	Cgc/Tgc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10259654	10259654	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62621087		P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	157	387	0	ENST00000340748.4:c.2578G>A	p.Gly860Arg	p.G860R	ENST00000340748		860	Ggg/Agg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262139	10262139	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			837	190	602	6	ENST00000340748.4:c.2152del	p.Met718CysfsTer59	p.M718Cfs*59	ENST00000340748		718	Atg/tg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276755	15276755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138265894		P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			839	187	710	0	ENST00000263388.2:c.5510G>A	p.Arg1837His	p.R1837H	ENST00000263388	NM_000435.2	1837	cGt/cAt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367902	15367902	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			723	70	558	0	ENST00000263377.2:c.1424del	p.Pro475LeufsTer109	p.P475Lfs*109	ENST00000263377	NM_058243.2	475	cCt/ct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223760	36223760	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1165953081		P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			958	63	761	0	ENST00000222270.7:c.6310C>T	p.Arg2104Trp	p.R2104W	ENST00000222270	NM_014727.1	2104	Cgg/Tgg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45858943	45858943	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			745	41	412	0	ENST00000391945.4:c.1523T>G	p.Phe508Cys	p.F508C	ENST00000391945	NM_000400.3	508	tTt/tGt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470603	25470603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	155	578	0	ENST00000264709.3:c.871G>A	p.Gly291Ser	p.G291S	ENST00000264709	NM_175629.2	291	Ggc/Agc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661596	227661596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			798	209	721	0	ENST00000305123.5:c.1859C>T	p.Ala620Val	p.A620V	ENST00000305123	NM_005544.2	620	gCc/gTc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793269	242793269	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1381223113		P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			787	49	620	0	ENST00000334409.5:c.808G>A	p.Gly270Ser	p.G270S	ENST00000334409	NM_005018.2	270	Ggc/Agc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			705	133	527	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070349	37070349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1220422495		P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			715	154	517	1	ENST00000231790.2:c.1489del	p.Arg497GlyfsTer11	p.R497Gfs*11	ENST00000231790	NM_000249.3	495	aCc/ac																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	329	476	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
MITF	4286	MSKCC	GRCh37	3	70014157	70014157	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			823	191	504	0	ENST00000352241.4:c.1321A>G	p.Thr441Ala	p.T441A	ENST00000352241	NM_198159.2	441	Act/Gct																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71019915	71019915	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs142371797		P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	142	508	0	ENST00000318789.4:c.1694A>G	p.Tyr565Cys	p.Y565C	ENST00000318789	NM_032682.5	565	tAc/tGc																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73046212	73046212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	97	432	0	ENST00000356692.5:c.24G>T	p.Glu8Asp	p.E8D	ENST00000356692		8	gaG/gaT																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664761	138664761	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1057516177		P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	97	398	2	ENST00000330315.3:c.804del	p.Gly269AlafsTer2	p.G269Afs*2	ENST00000330315	NM_023067.3	268	ccC/cc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	96	397	4	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																															
REST	5978	MSKCC	GRCh37	4	57777088	57777088	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			772	152	497	0	ENST00000309042.7:c.284A>C	p.Glu95Ala	p.E95A	ENST00000309042	NM_005612.4	95	gAg/gCg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	104	450	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584618	187584618	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			728	40	538	0	ENST00000441802.2:c.3415A>G	p.Thr1139Ala	p.T1139A	ENST00000441802	NM_005245.3	1139	Aca/Gca																																																																															
SDHA	6389	MSKCC	GRCh37	5	236628	236628	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201139275		P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	111	342	0	ENST00000264932.6:c.1346C>T	p.Ala449Val	p.A449V	ENST00000264932	NM_004168.2	449	gCc/gTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295851	1295851	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			926	200	872	0				ENST00000310581	NM_198253.2																																																																																	
PLK2	10769	MSKCC	GRCh37	5	57752812	57752812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	58	429	0	ENST00000274289.3:c.1116del	p.Phe372LeufsTer31	p.F372Lfs*31	ENST00000274289	NM_006622.3	372	ttT/tt																																																																															
APC	324	MSKCC	GRCh37	5	112176192	112176192	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370433763		P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			842	175	516	0	ENST00000257430.4:c.4901C>T	p.Pro1634Leu	p.P1634L	ENST00000257430	NM_000038.5	1634	cCg/cTg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522414	176522414	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	164	650	0	ENST00000292408.4:c.1603A>G	p.Asn535Asp	p.N535D	ENST00000292408	NM_213647.1	535	Aac/Gac																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910770	29910770	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	159	523	0	ENST00000376809.5:c.310A>G	p.Thr104Ala	p.T104A	ENST00000376809	NM_002116.7	104	Acc/Gcc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129060	152129060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	140	532	0	ENST00000206249.3:c.13C>A	p.Leu5Ile	p.L5I	ENST00000206249	NM_000125.3	5	Ctc/Atc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129397	152129397	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	61	582	0	ENST00000206249.3:c.350T>C	p.Leu117Pro	p.L117P	ENST00000206249	NM_000125.3	117	cTg/cCg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860130	151860130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			815	137	651	0	ENST00000262189.6:c.10532G>A	p.Gly3511Asp	p.G3511D	ENST00000262189	NM_170606.2	3511	gGc/gAc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			934	151	859	5	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			823	123	571	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	190	472	0	ENST00000269305.4:c.808T>C	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	Ttt/Ctt																																																																															
APC	324	MSKCC	GRCh37	5	112175346	112175350	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAA	TTGAA	-			P-0062146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	144	456	0	ENST00000257430.4:c.4057_4061del	p.Glu1353PhefsTer20	p.E1353Ffs*20	ENST00000257430	NM_000038.5	1352	gTTGAA/g																																																																															
KIT	3815	MSKCC	GRCh37	4	55564507	55564507	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766253584		P-0062146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	23	383	0	ENST00000288135.5:c.395C>T	p.Thr132Met	p.T132M	ENST00000288135	NM_000222.2	132	aCg/aTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202149626	202149626	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	88	516	0	ENST00000358485.4:c.1067A>T	p.Lys356Ile	p.K356I	ENST00000358485	NM_001080125.1	356	aAa/aTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0062255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	69	228	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0062255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	79	478	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992916	72992916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	64	567	0	ENST00000268489.5:c.1129G>A	p.Glu377Lys	p.E377K	ENST00000268489	NM_006885.3	377	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112174176	112174177	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0062255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	117	449	0	ENST00000257430.4:c.2886dup	p.Ser963Ter	p.S963*	ENST00000257430	NM_000038.5	962	gat/gaTt																																																																															
CTR9	9646	MSKCC	GRCh37	11	10788021	10788021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	45	346	0	ENST00000361367.2:c.1670C>T	p.Ala557Val	p.A557V	ENST00000361367	NM_014633.3	557	gCt/gTt																																																																															
INSR	3643	MSKCC	GRCh37	19	7143007	7143007	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151246790		P-0062255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	88	613	0	ENST00000302850.5:c.2362G>A	p.Val788Met	p.V788M	ENST00000302850	NM_000208.2	788	Gtg/Atg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	85	674	0	ENST00000324856.7:c.5547_5548dup	p.Asp1850GlyfsTer34	p.D1850Gfs*34	ENST00000324856	NM_006015.4	1847	-/GG																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740216	162740216	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775098890		P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	98	539	0	ENST00000367921.3:c.1418G>A	p.Arg473His	p.R473H	ENST00000367921	NM_006182.2	473	cGc/cAc																																																																															
RET	5979	MSKCC	GRCh37	10	43615036	43615036	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1345166214		P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	75	682	0	ENST00000355710.3:c.2450G>A	p.Arg817His	p.R817H	ENST00000355710	NM_020975.4	817	cGc/cAc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202113	67202113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	99	638	0	ENST00000312629.5:c.1216C>T	p.Pro406Ser	p.P406S	ENST00000312629	NM_003952.2	406	Ccc/Tcc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71945645	71945645	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144781166		P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	68	455	1	ENST00000298229.2:c.2401C>T	p.Arg801Cys	p.R801C	ENST00000298229	NM_001567.3	801	Cgc/Tgc																																																																															
CBL	867	MSKCC	GRCh37	11	119170319	119170319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	93	519	0	ENST00000264033.4:c.2549C>T	p.Ala850Val	p.A850V	ENST00000264033	NM_005188.3	850	gCt/gTt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46298716	46298716	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	31	286	0	ENST00000334344.6:c.5364-1G>T		p.X1788_splice	ENST00000334344	NM_152641.2	1788																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49432347	49432347	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			772	225	700	0	ENST00000301067.7:c.8792del	p.Pro2931HisfsTer12	p.P2931Hfs*12	ENST00000301067	NM_003482.3	2931	cCa/ca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			731	111	715	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
MSI1	4440	MSKCC	GRCh37	12	120783958	120783958	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1253933590		P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	81	600	0	ENST00000257552.2:c.1027G>A	p.Gly343Ser	p.G343S	ENST00000257552	NM_002442.3	343	Ggc/Agc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911443	32911443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	30	346	0	ENST00000380152.3:c.2957del	p.Asn986IlefsTer5	p.N986Ifs*5	ENST00000380152		984	gAa/ga																																																																															
AKT1	207	MSKCC	GRCh37	14	105243026	105243026	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773971502		P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	104	618	0	ENST00000349310.3:c.257G>A	p.Arg86His	p.R86H	ENST00000349310	NM_001014432.1	86	cGc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42052632	42052632	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779811318		P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			789	100	510	0	ENST00000219905.7:c.7303C>T	p.Arg2435Trp	p.R2435W	ENST00000219905	NM_001164273.1	2435	Cgg/Tgg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	125	542	1	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396247	396248	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	81	537	0	ENST00000262320.3:c.778_779del	p.Asp260ArgfsTer24	p.D260Rfs*24	ENST00000262320	NM_003502.3	260	GAc/c																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226338	2226338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	107	710	0	ENST00000326181.6:c.1951G>A	p.Val651Met	p.V651M	ENST00000326181	NM_032271.2	651	Gtg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832224	72832224	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	91	622	0	ENST00000268489.5:c.4357C>A	p.Leu1453Met	p.L1453M	ENST00000268489	NM_006885.3	1453	Ctg/Atg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81904511	81904511	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1189737304		P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	43	294	0	ENST00000359376.3:c.624del	p.Lys208AsnfsTer55	p.K208Nfs*55	ENST00000359376	NM_002661.3	207	Aaa/aa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346156	89346156	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757094468		P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	99	627	0	ENST00000301030.4:c.6794C>T	p.Ala2265Val	p.A2265V	ENST00000301030	NM_001256183.1	2265	gCc/gTc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348973	89348973	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144673419		P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			661	90	646	0	ENST00000301030.4:c.3977C>T	p.Thr1326Met	p.T1326M	ENST00000301030	NM_001256183.1	1326	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371409680		P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	163	574	0	ENST00000269305.4:c.848G>A	p.Arg283His	p.R283H	ENST00000269305	NM_001126112.2	283	cGc/cAc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30320886	30320889	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TCTC	TCTC	-			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	33	239	1	ENST00000322652.5:c.1297_1300del	p.Leu433IlefsTer22	p.L433Ifs*22	ENST00000322652	NM_015355.2	432	ttTCTC/tt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	215	784	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs758630849		P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	81	423	0	ENST00000305921.3:c.1349del	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			769	97	665	5	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238936	5238936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	82	583	0	ENST00000357368.4:c.1843C>A	p.Gln615Lys	p.Q615K	ENST00000357368	NM_002850.3	615	Cag/Aag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290217	15290217	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			767	124	815	1	ENST00000263388.2:c.3418C>A	p.Leu1140Ile	p.L1140I	ENST00000263388	NM_000435.2	1140	Ctc/Atc																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17389816	17389817	+	missense_variant	Missense_Mutation	DNP	GA	GA	CT			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	95	572	1	ENST00000359435.4:c.949_950delinsCT	p.Glu317Leu	p.E317L	ENST00000359435	NM_001033549.1	317	GAg/CTg																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731520	47731520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	50	430	0	ENST00000449228.1:c.272G>A	p.Cys91Tyr	p.C91Y	ENST00000449228	NM_001127240.2	91	tGc/tAc																																																																															
CASP8	841	MSKCC	GRCh37	2	202149819	202149819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	84	566	1	ENST00000358485.4:c.1264del	p.Asp422IlefsTer19	p.D422Ifs*19	ENST00000358485	NM_001080125.1	420	caG/ca																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204732730	204732730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	81	466	0	ENST00000302823.3:c.65G>A	p.Cys22Tyr	p.C22Y	ENST00000302823	NM_005214.4	22	tGc/tAc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794860	242794860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	72	701	0	ENST00000334409.5:c.349G>T	p.Asp117Tyr	p.D117Y	ENST00000334409	NM_005018.2	117	Gac/Tac																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655413	45655413	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	111	607	0	ENST00000407780.3:c.439del	p.His147ThrfsTer15	p.H147Tfs*15	ENST00000407780	NM_001283052.1	147	Cac/ac																																																																															
VHL	7428	MSKCC	GRCh37	3	10183561	10183561	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs963501454		P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	73	679	2	ENST00000256474.2:c.30G>T	p.Glu10Asp	p.E10D	ENST00000256474	NM_000551.3	10	gaG/gaT																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998164	169998165	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	54	361	0	ENST00000295797.4:c.861dup	p.Glu288ArgfsTer4	p.E288Rfs*4	ENST00000295797	NM_002740.5	285	-/A																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186501419	186501419	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	68	369	0	ENST00000323963.5:c.20A>G	p.Asp7Gly	p.D7G	ENST00000323963		7	gAt/gGt																																																																															
KDR	3791	MSKCC	GRCh37	4	55972074	55972074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	93	455	0	ENST00000263923.4:c.1570G>A	p.Val524Met	p.V524M	ENST00000263923	NM_002253.2	524	Gtg/Atg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	49	403	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31405801	31405801	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	32	295	0	ENST00000344624.3:c.3977T>A	p.Met1326Lys	p.M1326K	ENST00000344624		1326	aTg/aAg																																																																															
APC	324	MSKCC	GRCh37	5	112176739	112176740	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	30	349	0	ENST00000257430.4:c.5453dup	p.Asn1818LysfsTer2	p.N1818Kfs*2	ENST00000257430	NM_000038.5	1816	-/A																																																																															
APC	324	MSKCC	GRCh37	5	112178001	112178001	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1299714632		P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	67	466	0	ENST00000257430.4:c.6710G>A	p.Arg2237Gln	p.R2237Q	ENST00000257430	NM_000038.5	2237	cGa/cAa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323362	31323363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	77	505	1	ENST00000412585.2:c.626dup	p.Thr211AspfsTer10	p.T211Dfs*10	ENST00000412585	NM_005514.6	209	cca/ccCa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199888	138199888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			718	111	697	0	ENST00000237289.4:c.1306G>T	p.Gly436Trp	p.G436W	ENST00000237289	NM_001270507.1	436	Ggg/Tgg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023003	150023003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	46	434	1	ENST00000253339.5:c.260C>T	p.Pro87Leu	p.P87L	ENST00000253339		87	cCa/cTa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106522568	106522568	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs754441790		P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	28	224	0	ENST00000359195.3:c.2545C>T	p.Arg849Ter	p.R849*	ENST00000359195	NM_002649.2	849	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	59	362	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956823	68956823	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	38	390	0	ENST00000288368.4:c.941C>T	p.Thr314Ile	p.T314I	ENST00000288368	NM_024870.2	314	aCc/aTc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	86	527	3	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98221935	98221935	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201118857		P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	98	553	0	ENST00000331920.6:c.2834G>A	p.Arg945Gln	p.R945Q	ENST00000331920	NM_000264.3	945	cGa/cAa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391431	139391431	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1163673587		P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	110	750	0	ENST00000277541.6:c.6760G>A	p.Glu2254Lys	p.E2254K	ENST00000277541	NM_017617.3	2254	Gag/Aag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53230884	53230884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	70	605	0	ENST00000375401.3:c.1909C>T	p.Arg637Trp	p.R637W	ENST00000375401	NM_004187.3	637	Cgg/Tgg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53241046	53241046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	84	434	0	ENST00000375401.3:c.1165A>G	p.Thr389Ala	p.T389A	ENST00000375401	NM_004187.3	389	Acc/Gcc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412344	63412344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs958633014		P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	85	639	0	ENST00000330258.3:c.823G>A	p.Ala275Thr	p.A275T	ENST00000330258	NM_152424.3	275	Gcc/Acc																																																																															
AR	367	MSKCC	GRCh37	X	66941758	66941758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	67	420	1	ENST00000374690.3:c.2407del	p.Gln803ArgfsTer6	p.Q803Rfs*6	ENST00000374690	NM_000044.3	801	aCc/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0062257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	213	560	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0062257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	145	423	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0062257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	64	553	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920413	114920413	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767830105		P-0062257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	186	491	0	ENST00000543371.1:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000543371	NM_001198531.1	452	Ggg/Agg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591903	48591903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	84	596	0	ENST00000342988.3:c.1066C>T	p.Pro356Ser	p.P356S	ENST00000342988	NM_005359.5	356	Cct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0062257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	133	331	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0062258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	65	294	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0062258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			815	58	751	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112162946	112162946	+	splice_donor_variant	Splice_Site	SNP	T	T	C	rs1057517561		P-0062258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	112	437	0	ENST00000257430.4:c.1548+2T>C		p.X516_splice	ENST00000257430	NM_000038.5	516																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0062258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	28	415	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0062258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	136	412	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119631550	119631550	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0062258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	79	345	0	ENST00000316626.5:c.715+1G>A		p.X239_splice	ENST00000316626		239																																																																																
APC	324	MSKCC	GRCh37	5	112175757	112175767	+	frameshift_variant	Frame_Shift_Del	DEL	TACATTTTGCC	TACATTTTGCC	-			P-0062258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			775	259	819	0	ENST00000257430.4:c.4466_4476del	p.Leu1489TyrfsTer21	p.L1489Yfs*21	ENST00000257430	NM_000038.5	1489	tTACATTTTGCC/t																																																																															
AR	367	MSKCC	GRCh37	X	66765505	66765505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1053	70	917	0	ENST00000374690.3:c.517G>A	p.Gly173Ser	p.G173S	ENST00000374690	NM_000044.3	173	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0062265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	210	522	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70970946	70970946	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	57	541	0	ENST00000276594.2:c.1315C>T	p.Arg439Ter	p.R439*	ENST00000276594	NM_024504.3	439	Cga/Tga																																																																															
GNB1	2782	MSKCC	GRCh37	1	1721948	1721948	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	108	564	0	ENST00000378609.4:c.585C>A	p.Asp195Glu	p.D195E	ENST00000378609	NM_002074.3	195	gaC/gaA																																																																															
ABL1	25	MSKCC	GRCh37	9	133760735	133760735	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs201683427		P-0062265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	102	616	0	ENST00000318560.5:c.3058G>C	p.Glu1020Gln	p.E1020Q	ENST00000318560	NM_005157.4	1020	Gag/Cag																																																																															
APC	324	MSKCC	GRCh37	5	112174111	112174122	+	frameshift_variant	Frame_Shift_Del	DEL	GGAAAATTCAAA	GGAAAATTCAAA	ATGTTCAC			P-0062265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	101	488	1	ENST00000257430.4:c.2820_2831delinsATGTTCAC	p.Glu941CysfsTer13	p.E941Cfs*13	ENST00000257430	NM_000038.5	940	tcGGAAAATTCAAAt/tcATGTTCACt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0062270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	70	568	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0062270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	95	466	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0062270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	74	487	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519999		P-0062270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	120	452	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882099	36882099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199646937		P-0062270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	60	514	0	ENST00000358127.4:c.914G>A	p.Arg305His	p.R305H	ENST00000358127	NM_001280556.1	305	cGt/cAt																																																																															
TET1	80312	MSKCC	GRCh37	10	70412277	70412277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	48	322	0	ENST00000373644.4:c.4387G>A	p.Ala1463Thr	p.A1463T	ENST00000373644	NM_030625.2	1463	Gca/Aca																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032541	12032541	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267604739		P-0062270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	67	364	0	ENST00000353533.5:c.977C>T	p.Pro326Leu	p.P326L	ENST00000353533	NM_003010.3	326	cCg/cTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266963	41266963	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770795614		P-0062270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	124	608	0	ENST00000349496.5:c.634C>T	p.Arg212Cys	p.R212C	ENST00000349496	NM_001904.3	212	Cgt/Tgt																																																																															
EP300	2033	MSKCC	GRCh37	22	41573312	41573312	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763290593		P-0062270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			851	65	813	0	ENST00000263253.7:c.5597C>T	p.Pro1866Leu	p.P1866L	ENST00000263253	NM_001429.3	1866	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0062270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	89	298	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0062270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	74	305	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784148	9784148	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0062270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	64	596	0	ENST00000377346.4:c.2716C>A	p.Gln906Lys	p.Q906K	ENST00000377346	NM_005026.3	906	Cag/Aag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436671	110436671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			806	96	683	0	ENST00000375856.3:c.1730C>A	p.Ser577Tyr	p.S577Y	ENST00000375856	NM_003749.2	577	tCc/tAc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30093446	30093446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	15	288	0	ENST00000331968.5:c.1817G>T	p.Gly606Val	p.G606V	ENST00000331968	NM_002742.2	606	gGa/gTa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31374429	31374429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			772	228	658	0	ENST00000328111.2:c.428C>T	p.Thr143Ile	p.T143I	ENST00000328111	NM_006892.3	143	aCc/aTc																																																																															
APC	324	MSKCC	GRCh37	5	112176036	112176036	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	117	561	0	ENST00000257430.4:c.4746del	p.Met1583CysfsTer67	p.M1583Cfs*67	ENST00000257430	NM_000038.5	1582	gCc/gc																																																																															
LYN	4067	MSKCC	GRCh37	8	56864575	56864575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	34	405	0	ENST00000519728.1:c.538A>G	p.Ile180Val	p.I180V	ENST00000519728	NM_002350.3	180	Att/Gtt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0062322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	156	557	2	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604748	48604748	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	190	600	0	ENST00000342988.3:c.1570T>C	p.Trp524Arg	p.W524R	ENST00000342988	NM_005359.5	524	Tgg/Cgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0062322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	149	324	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495478	56495478	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	273	719	0	ENST00000267101.3:c.3668A>T	p.Glu1223Val	p.E1223V	ENST00000267101	NM_001982.3	1223	gAg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577111	7577112	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTA			P-0062322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	100	597	0	ENST00000269305.4:c.786_826dup	p.Ala276ValfsTer83	p.A276Vfs*83	ENST00000269305	NM_001126112.2	276	gcc/gTAATCTACTGGGACGGAACAGCTTTGAGGTGCGTGTTTGTGcc																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0062323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	80	566	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624270	89624270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs398123324		P-0062323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	48	255	0	ENST00000371953.3:c.44G>A	p.Arg15Lys	p.R15K	ENST00000371953	NM_000314.4	15	aGa/aAa																																																																															
ATM	472	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782292		P-0062323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	70	595	0	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112137036	112137036	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	54	363	0	ENST00000257430.4:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000257430	NM_000038.5	264	Caa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023048	27023091	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCCGCCGGGCAGGAAAGCGAGGGCCCCGCCGTGGGGCCGCC	GCAGCCGCCGGGCAGGAAAGCGAGGGCCCCGCCGTGGGGCCGCC	-			P-0062323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	74	542	0	ENST00000324856.7:c.162_205del	p.Gln56LysfsTer40	p.Q56Kfs*40	ENST00000324856	NM_006015.4	52	GCAGCCGCCGGGCAGGAAAGCGAGGGCCCCGCCGTGGGGCCGCCg/g																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368200	45368200	+	stop_lost	Nonstop_Mutation	SNP	A	A	T			P-0062323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	135	479	0	ENST00000262160.6:c.1402T>A	p.Ter468LysextTer8	p.*468Kext*8	ENST00000262160	NM_005901.5	468	Taa/Aaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247174	153247174	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	130	422	0	ENST00000281708.4:c.1628G>C	p.Arg543Thr	p.R543T	ENST00000281708	NM_033632.3	543	aGa/aCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0062323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	61	327	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
RB1	5925	MSKCC	GRCh37	13	49039204	49039204	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	62	383	0	ENST00000267163.4:c.2282T>C	p.Met761Thr	p.M761T	ENST00000267163	NM_000321.2	761	aTg/aCg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120279	70120279	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	102	696	0	ENST00000245479.2:c.1281del	p.Tyr428ThrfsTer42	p.Y428Tfs*42	ENST00000245479	NM_000346.3	427	caC/ca																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375300	15375300	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0062323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	40	587	0	ENST00000263377.2:c.1127del	p.Phe376SerfsTer25	p.F376Sfs*25	ENST00000263377	NM_058243.2	376	tTc/tc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47425371	47425371	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1420876999		P-0062323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			733	55	620	0	ENST00000404338.3:c.3439C>T	p.Arg1147Cys	p.R1147C	ENST00000404338	NM_004491.4	1147	Cgc/Tgc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457303	67457303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs768713596		P-0062328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	155	722	0	ENST00000327367.4:c.277C>T	p.Arg93Ter	p.R93*	ENST00000327367	NM_005902.3	93	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0062328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	210	460	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29107991	29107991	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	84	411	0	ENST00000328354.6:c.698A>G	p.Glu233Gly	p.E233G	ENST00000328354	NM_007194.3	233	gAg/gGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0062328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	57	285	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111884970	111884970	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0062328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	139	643	0	ENST00000341259.2:c.968T>G	p.Leu323Arg	p.L323R	ENST00000341259	NM_005475.2	323	cTa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0062331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	135	600	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860053	57860053	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200444628		P-0062331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	128	540	0	ENST00000228682.2:c.793C>T	p.Arg265Trp	p.R265W	ENST00000228682	NM_005269.2	265	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0062331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	64	331	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575186	48575186	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	84	332	0	ENST00000342988.3:c.380G>C	p.Cys127Ser	p.C127S	ENST00000342988	NM_005359.5	127	tGt/tCt																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0062333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	290	539	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0062333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	85	516	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0062333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	134	395	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0062333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	114	340	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0062333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	30	663	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0062333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	169	526	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579575	7579575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	88	692	0	ENST00000269305.4:c.112C>T	p.Gln38Ter	p.Q38*	ENST00000269305	NM_001126112.2	38	Caa/Taa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31395599	31395599	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121908940		P-0062333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	166	676	1	ENST00000328111.2:c.2452G>A	p.Val818Met	p.V818M	ENST00000328111	NM_006892.3	818	Gtg/Atg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711272	114711273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0062333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	116	521	0	ENST00000543371.1:c.291dup	p.Pro98AlafsTer47	p.P98Afs*47	ENST00000543371	NM_001198531.1	96	aag/aaGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591946	48591946	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0062333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	23	528	0	ENST00000342988.3:c.1109T>A	p.Val370Asp	p.V370D	ENST00000342988	NM_005359.5	370	gTc/gAc																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6216464	6216464	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1279997160		P-0062333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	68	581	0	ENST00000252674.7:c.1259C>T	p.Ser420Leu	p.S420L	ENST00000252674	NM_005934.3	420	tCg/tTg																																																																															
ALK	238	MSKCC	GRCh37	2	29446230	29446230	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773583710		P-0062333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	80	654	0	ENST00000389048.3:c.3337C>T	p.Arg1113Trp	p.R1113W	ENST00000389048	NM_004304.4	1113	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0062377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	95	436	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0062377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	227	666	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0062377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	187	647	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0062377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			790	260	782	1	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480412	89480412	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	136	515	0	ENST00000336596.2:c.2250del	p.Asn751ThrfsTer3	p.N751Tfs*3	ENST00000336596	NM_005233.5	750	cGg/cg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541997	187541997	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			753	223	652	0	ENST00000441802.2:c.5743A>G	p.Ile1915Val	p.I1915V	ENST00000441802	NM_005245.3	1915	Att/Gtt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247367	153247367	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	8	609	0	ENST00000281708.4:c.1435C>T	p.Arg479Ter	p.R479*	ENST00000281708	NM_033632.3	479	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0062386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	215	789	1	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112175749	112175756	+	frameshift_variant	Frame_Shift_Del	DEL	TACTTTAT	TACTTTAT	-			P-0062386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	140	635	0	ENST00000257430.4:c.4461_4468del	p.Leu1488PhefsTer23	p.L1488Ffs*23	ENST00000257430	NM_000038.5	1486	gaTACTTTATta/gata																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231416	46231416	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0062386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	133	450	0	ENST00000334344.6:c.1256T>A	p.Leu419His	p.L419H	ENST00000334344	NM_152641.2	419	cTc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578230	7578230	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	179	662	0	ENST00000269305.4:c.619G>C	p.Asp207His	p.D207H	ENST00000269305	NM_001126112.2	207	Gat/Cat																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920392	134920392	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	129	641	0	ENST00000398015.3:c.2207C>A	p.Ala736Asp	p.A736D	ENST00000398015	NM_004441.4	736	gCt/gAt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419998	152419998	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	160	572	0	ENST00000206249.3:c.1685A>G	p.Glu562Gly	p.E562G	ENST00000206249	NM_000125.3	562	gAg/gGg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190824	11190824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868040471		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			452	337	517	0	ENST00000361445.4:c.5375C>T	p.Ala1792Val	p.A1792V	ENST00000361445	NM_004958.3	1792	gCg/gTg																																																																															
CDC42	998	MSKCC	GRCh37	1	22404976	22404976	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			91	10	71	0	ENST00000344548.3:c.5A>G	p.Gln2Arg	p.Q2R	ENST00000344548	NM_001039802.1	2	cAg/cGg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175957459	175957459	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			399	250	437	0	ENST00000367669.3:c.1937T>C	p.Val646Ala	p.V646A	ENST00000367669	NM_022457.5	646	gTa/gCa																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206646650	206646650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			427	305	455	0	ENST00000367120.3:c.80G>A	p.Arg27His	p.R27H	ENST00000367120	NM_014002.3	27	cGc/cAc																																																																															
TET1	80312	MSKCC	GRCh37	10	70450940	70450940	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			545	335	598	0	ENST00000373644.4:c.5780C>A	p.Ser1927Tyr	p.S1927Y	ENST00000373644	NM_030625.2	1927	tCc/tAc																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154241	2154242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755455183		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			691	128	607	3	ENST00000434045.2:c.686dup	p.Glu230ArgfsTer50	p.E230Rfs*50	ENST00000434045	NM_001127598.1	229	cca/ccCa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942229	71942229	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770428487		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			515	376	549	0	ENST00000298229.2:c.1493G>A	p.Arg498His	p.R498H	ENST00000298229	NM_001567.3	498	cGc/cAc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998492	100998492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			413	313	601	1	ENST00000325455.5:c.1310C>T	p.Ala437Val	p.A437V	ENST00000325455	NM_001202474.3	437	gCg/gTg																																																																															
ATM	472	MSKCC	GRCh37	11	108121531	108121531	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779815		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			482	299	477	0	ENST00000278616.4:c.1339C>T	p.Arg447Ter	p.R447*	ENST00000278616	NM_000051.3	447	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108203563	108203563	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			277	174	383	0	ENST00000278616.4:c.7863G>T	p.Glu2621Asp	p.E2621D	ENST00000278616	NM_000051.3	2621	gaG/gaT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426849	49426850	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			543	360	616	0	ENST00000301067.7:c.11638_11639del	p.Leu3880AspfsTer131	p.L3880Dfs*131	ENST00000301067	NM_003482.3	3880	CTg/g																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435297	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGCGGT	GGCGGT	-	rs761851705		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			627	209	737	0	ENST00000375856.3:c.3099_3104del	p.Pro1035_Pro1036del	p.P1035_P1036del	ENST00000375856	NM_003749.2	1033	ccACCGCCg/ccg																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			540	333	577	2	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779210	3779211	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs797045497		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			508	122	518	1	ENST00000262367.5:c.5837dup	p.Pro1947ThrfsTer19	p.P1947Tfs*19	ENST00000262367	NM_004380.2	1946	cca/ccCa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821344	72821344	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	211	428	1	ENST00000268489.5:c.10831del	p.His3611ThrfsTer83	p.H3611Tfs*83	ENST00000268489	NM_006885.3	3611	Cac/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			453	356	591	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587780075		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			474	299	571	0	ENST00000269305.4:c.800G>A	p.Arg267Gln	p.R267Q	ENST00000269305	NM_001126112.2	267	cGg/cAg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687019	37687019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	373	587	0	ENST00000447079.4:c.3923C>A	p.Pro1308His	p.P1308H	ENST00000447079	NM_015083.1	1308	cCt/cAt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			653	271	616	1	ENST00000447079.4:c.4382del	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	862	749	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
CD79B	974	MSKCC	GRCh37	17	62007443	62007443	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			514	337	624	0	ENST00000392795.3:c.424C>T	p.Arg142Ter	p.R142*	ENST00000392795	NM_001039933.1	142	Cga/Tga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533732	63533733	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGG	rs570443161		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			750	314	760	1	ENST00000307078.5:c.1419_1421dup	p.His474dup	p.H474dup	ENST00000307078	NM_004655.3	474	cat/caCCAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5219399	5219399	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			517	351	640	0	ENST00000357368.4:c.3845G>T	p.Gly1282Val	p.G1282V	ENST00000357368	NM_002850.3	1282	gGg/gTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10246447	10246447	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747467776		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			411	249	401	0	ENST00000340748.4:c.4690C>T	p.Arg1564Trp	p.R1564W	ENST00000340748		1564	Cgg/Tgg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10283839	10283839	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758190156		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			420	308	470	0	ENST00000340748.4:c.647C>T	p.Pro216Leu	p.P216L	ENST00000340748		216	cCg/cTg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085728	16085728	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144939456		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			446	360	537	0	ENST00000281043.3:c.904C>T	p.Arg302Cys	p.R302C	ENST00000281043	NM_005378.4	302	Cgt/Tgt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972671	25972671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			749	218	585	0	ENST00000435504.4:c.1754C>A	p.Pro585Gln	p.P585Q	ENST00000435504		585	cCa/cAa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			639	348	554	10	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714369	40714369	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs775489787		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			455	644	505	1	ENST00000373198.4:c.4028G>A	p.Arg1343Gln	p.R1343Q	ENST00000373198	NM_133170.3	1343	cGg/cAg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458339	12458339	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			499	364	534	0	ENST00000287820.6:c.956A>T	p.Glu319Val	p.E319V	ENST00000287820	NM_015869.4	319	gAg/gTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715600	30715600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			432	276	516	0	ENST00000359013.4:c.1333G>A	p.Gly445Arg	p.G445R	ENST00000359013	NM_001024847.2	445	Gga/Aga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670340	134670340	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1415689583		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			438	343	486	0	ENST00000398015.3:c.251G>A	p.Arg84His	p.R84H	ENST00000398015	NM_004441.4	84	cGc/cAc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138376566	138376566	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			326	259	350	0	ENST00000289153.2:c.2908C>T	p.Gln970Ter	p.Q970*	ENST00000289153	NM_006219.2	970	Caa/Taa																																																																															
BCL6	604	MSKCC	GRCh37	3	187440364	187440364	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1426858162		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			403	306	460	0	ENST00000232014.4:c.2003G>A	p.Arg668His	p.R668H	ENST00000232014	NM_001130845.1	668	cGt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153271211	153271212	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			131	77	302	0	ENST00000281708.4:c.566_567del	p.Lys189SerfsTer66	p.K189Sfs*66	ENST00000281708	NM_033632.3	189	aAA/a																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			296	165	354	2	ENST00000303115.3:c.361del	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177584	56177584	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368201444		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			455	333	525	2	ENST00000399503.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000399503	NM_005921.1	853	Cgt/Tgt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753379	57753380	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			386	239	485	0	ENST00000274289.3:c.744_745del	p.Pro249Ter	p.P249*	ENST00000274289	NM_006622.3	248	tcTCct/tcct																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753914	57753916	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			369	249	394	0	ENST00000274289.3:c.708_710del	p.Arg238del	p.R238del	ENST00000274289	NM_006622.3	236	agAAGg/agg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120759	94120759	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			508	320	558	0	ENST00000369303.4:c.292A>T	p.Ile98Phe	p.I98F	ENST00000369303	NM_004440.3	98	Att/Ttt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450363	50450363	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1441542459		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			749	327	507	0	ENST00000331340.3:c.547C>T	p.Arg183Cys	p.R183C	ENST00000331340	NM_006060.4	183	Cgc/Tgc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			312	422	375	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090496	5090496	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs750978665		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			202	123	329	0	ENST00000381652.3:c.2812C>T	p.Arg938Ter	p.R938*	ENST00000381652	NM_004972.3	938	Cga/Tga																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006222	22006222	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752675430		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			488	361	663	0	ENST00000276925.6:c.181G>A	p.Val61Met	p.V61M	ENST00000276925	NM_004936.3	61	Gtg/Atg																																																																															
PAX5	5079	MSKCC	GRCh37	9	36840613	36840613	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756710542		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			419	331	485	0	ENST00000358127.4:c.1120G>A	p.Ala374Thr	p.A374T	ENST00000358127	NM_001280556.1	374	Gct/Act																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15821896	15821896	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			442	224	435	1	ENST00000307771.7:c.294del	p.Lys98AsnfsTer10	p.K98Nfs*10	ENST00000307771	NM_005089.3	97	Aaa/aa																																																																															
ATRX	546	MSKCC	GRCh37	X	76776925	76776925	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			273	157	364	0	ENST00000373344.5:c.7027A>G	p.Thr2343Ala	p.T2343A	ENST00000373344	NM_000489.3	2343	Aca/Gca																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279861	46279866	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-	rs779458461		P-0062603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1180	145	707	0	ENST00000371998.3:c.3810_3815del	p.Gln1275_Gln1276del	p.Q1275_Q1276del	ENST00000371998		1263	CAGCAA/-																																																																															
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0062643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	42	406	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188853	32188853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs192478549		P-0062643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			747	69	567	0	ENST00000375023.3:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000375023	NM_004557.3	234	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112176021	112176021	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0062643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	38	420	0	ENST00000257430.4:c.4731del	p.Glu1577AspfsTer73	p.E1577Dfs*73	ENST00000257430	NM_000038.5	1577	gAa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0062643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	54	299	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356238	66356238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			702	40	466	0	ENST00000273854.3:c.1259G>T	p.Gly420Val	p.G420V	ENST00000273854	NM_004439.5	420	gGc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578464	7578464	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062730-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			856	87	795	0	ENST00000269305.4:c.466del	p.Arg156AlafsTer14	p.R156Afs*14	ENST00000269305	NM_001126112.2	156	Cgc/gc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs730881677		P-0062730-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			863	98	703	1	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10600470	10600470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062730-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			551	76	680	0	ENST00000171111.5:c.1385G>T	p.Gly462Val	p.G462V	ENST00000171111	NM_203500.1	462	gGg/gTg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716316	52716316	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062730-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			690	40	695	0	ENST00000322088.6:c.760G>C	p.Asp254His	p.D254H	ENST00000322088	NM_014225.5	254	Gac/Cac																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750448	41750449	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0062730-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			555	49	727	2	ENST00000226382.2:c.179_180delinsAA	p.Leu60Gln	p.L60Q	ENST00000226382	NM_003924.3	60	cTC/cAA																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0062915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	23	529	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0062915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	56	636	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820792	3820792	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			844	53	852	0	ENST00000262367.5:c.2659C>A	p.Gln887Lys	p.Q887K	ENST00000262367	NM_004380.2	887	Cag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175720	112175720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			824	58	690	0	ENST00000257430.4:c.4429C>T	p.Gln1477Ter	p.Q1477*	ENST00000257430	NM_000038.5	1477	Cag/Tag																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625228	69625228	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868995912		P-0062915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	47	786	2	ENST00000334134.2:c.565G>A	p.Glu189Lys	p.E189K	ENST00000334134	NM_005247.2	189	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68844182	68844182	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			754	57	669	0	ENST00000261769.5:c.770A>T	p.Asp257Val	p.D257V	ENST00000261769	NM_004360.3	257	gAc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112173582	112173582	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0062915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	43	652	0	ENST00000257430.4:c.2291T>G	p.Leu764Ter	p.L764*	ENST00000257430	NM_000038.5	764	tTa/tGa																																																																															
RAB35	11021	MSKCC	GRCh37	12	120541738	120541738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	38	780	0	ENST00000229340.5:c.119C>T	p.Thr40Met	p.T40M	ENST00000229340	NM_006861.6	40	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0062916-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	152	678	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0062916-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	184	575	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0062916-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	9	705	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763246	59763246	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062916-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	140	522	0	ENST00000259008.2:c.2856T>G	p.Ile952Met	p.I952M	ENST00000259008	NM_032043.2	952	atT/atG																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368235	45368235	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062916-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	25	534	0	ENST00000262160.6:c.1367T>A	p.Met456Lys	p.M456K	ENST00000262160	NM_005901.5	456	aTg/aAg																																																																															
MSH3	4437	MSKCC	GRCh37	5	80083460	80083460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062916-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	106	494	0	ENST00000265081.6:c.2512G>A	p.Ala838Thr	p.A838T	ENST00000265081	NM_002439.4	838	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112175184	112175185	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0062916-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	155	525	0	ENST00000257430.4:c.3894_3895dup	p.Ala1299ValfsTer7	p.A1299Vfs*7	ENST00000257430	NM_000038.5	1298	tct/tcTGt																																																																															
MED12	9968	MSKCC	GRCh37	X	70352327	70352327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062916-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	188	353	0	ENST00000374080.3:c.4354G>A	p.Glu1452Lys	p.E1452K	ENST00000374080		1452	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0062960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	195	644	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0062960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	121	442	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0062960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	88	756	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0062960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	82	433	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18715747	18715747	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	213	692	0	ENST00000266497.5:c.3578C>G	p.Pro1193Arg	p.P1193R	ENST00000266497		1193	cCt/cGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832580	72832580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			753	41	652	0	ENST00000268489.5:c.4001C>T	p.Pro1334Leu	p.P1334L	ENST00000268489	NM_006885.3	1334	cCa/cTa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11094931	11094931	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs563079629		P-0062960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	170	764	0	ENST00000344626.4:c.104C>T	p.Ser35Leu	p.S35L	ENST00000344626	NM_003072.3	35	tCg/tTg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162622164	162622164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0062960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			835	79	683	0	ENST00000366898.1:c.533A>T	p.Gln178Leu	p.Q178L	ENST00000366898	NM_004562.2	178	cAg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735466	40735466	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182388300		P-0063014-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	122	530	0	ENST00000373198.4:c.3407G>A	p.Arg1136His	p.R1136H	ENST00000373198	NM_133170.3	1136	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0063014-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	60	273	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579505	7579505	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0063014-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	168	683	0	ENST00000269305.4:c.182del	p.Asp61ValfsTer62	p.D61Vfs*62	ENST00000269305	NM_001126112.2	61	gAt/gt																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281344	49281344	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202077345		P-0063014-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	38	565	0	ENST00000282018.3:c.391G>A	p.Val131Met	p.V131M	ENST00000282018	NM_020377.2	131	Gtg/Atg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190717454	190717455	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0063014-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	93	392	0	ENST00000441310.2:c.776dup	p.Ile260HisfsTer46	p.I260Hfs*46	ENST00000441310	NM_000534.4	258	agt/agTt																																																																															
KDR	3791	MSKCC	GRCh37	4	55991433	55991433	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs375186728		P-0063014-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	24	435	0	ENST00000263923.4:c.28G>T	p.Ala10Ser	p.A10S	ENST00000263923	NM_002253.2	10	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0063040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	140	516	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0063040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	27	304	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0063040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	45	361	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99160392	99160392	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377398401		P-0063040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	140	533	0	ENST00000074304.5:c.871C>T	p.Arg291Trp	p.R291W	ENST00000074304	NM_001134224.1	291	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229441	36229441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	34	543	0	ENST00000222270.7:c.8131C>T	p.Arg2711Cys	p.R2711C	ENST00000222270	NM_014727.1	2711	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175630	112175630	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	84	543	0	ENST00000257430.4:c.4339del	p.Gln1447LysfsTer26	p.Q1447Kfs*26	ENST00000257430	NM_000038.5	1447	Caa/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0063040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	87	237	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94203809	94203809	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0063040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	79	323	0	ENST00000323929.3:c.846-1G>A		p.X282_splice	ENST00000323929	NM_005591.3	282																																																																																
PIK3C2G	5288	MSKCC	GRCh37	12	18443837	18443837	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	29	346	0	ENST00000266497.5:c.810G>T	p.Lys270Asn	p.K270N	ENST00000266497		270	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0063041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			727	170	670	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0063041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	72	350	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354007	15354008	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0063041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	31	240	3	ENST00000263377.2:c.2872dup	p.Leu958ProfsTer135	p.L958Pfs*135	ENST00000263377	NM_058243.2	958	ctg/cCtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0063041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	160	346	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175160	112175161	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0063041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	88	434	0	ENST00000257430.4:c.3869_3870del	p.Asn1290ThrfsTer10	p.N1290Tfs*10	ENST00000257430	NM_000038.5	1290	aAT/a																																																																															
ABL1	25	MSKCC	GRCh37	9	133760580	133760580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			908	184	657	0	ENST00000318560.5:c.2903C>A	p.Ser968Tyr	p.S968Y	ENST00000318560	NM_005157.4	968	tCc/tAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0063042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	24	212	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0063042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			793	70	529	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
JUN	3725	MSKCC	GRCh37	1	59248525	59248525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			998	76	584	0	ENST00000371222.2:c.218C>A	p.Ser73Ter	p.S73*	ENST00000371222	NM_002228.3	73	tCg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0063042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	101	304	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175773	112175774	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0063042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			809	79	490	0	ENST00000257430.4:c.4483_4484dup	p.Ser1495ArgfsTer13	p.S1495Rfs*13	ENST00000257430	NM_000038.5	1494	-/AG																																																																															
RAD21	5885	MSKCC	GRCh37	8	117869580	117869580	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	50	364	0	ENST00000297338.2:c.614A>T	p.Lys205Ile	p.K205I	ENST00000297338	NM_006265.2	205	aAa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0063051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	418	758	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	433	608	0	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0063051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	165	576	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112174268	112174268	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0063051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	115	665	0	ENST00000257430.4:c.2977A>T	p.Lys993Ter	p.K993*	ENST00000257430	NM_000038.5	993	Aag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120311	70120311	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0063051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	424	760	2	ENST00000245479.2:c.1313C>G	p.Ser438Ter	p.S438*	ENST00000245479	NM_000346.3	438	tCa/tGa																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967029	18967029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	290	510	1	ENST00000262803.5:c.1744G>A	p.Asp582Asn	p.D582N	ENST00000262803	NM_002911.3	582	Gac/Aac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878663	151878663	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0063051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	197	747	0	ENST00000262189.6:c.6282T>G	p.Tyr2094Ter	p.Y2094*	ENST00000262189	NM_170606.2	2094	taT/taG																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044470	47044470	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	330	658	0	ENST00000329236.7:c.1733A>G	p.Glu578Gly	p.E578G	ENST00000329236	NM_001204466.1	578	gAa/gGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578551	7578558	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTACTGT	AGTACTGT	-			P-0063124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	216	643	0	ENST00000269305.4:c.376-4_379del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
MSH3	4437	MSKCC	GRCh37	5	79950708	79950709	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCAGCGGCC	rs773983405		P-0063124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	47	474	0	ENST00000265081.6:c.178_186dup	p.Ala60_Ala62dup	p.A60_A62dup	ENST00000265081	NM_002439.4	60	-/GCAGCGGCC																																																																															
ELF3	1999	MSKCC	GRCh37	1	201980398	201980399	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0063124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	481	766	0	ENST00000359651.3:c.135dup	p.Asn46GlnfsTer46	p.N46Qfs*46	ENST00000359651		45	agc/agCc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	126	329	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519991		P-0063134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	267	809	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0063134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	82	420	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0063134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	171	592	0	ENST00000257430.4:c.4473del	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727442	66727442	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	196	501	0	ENST00000307102.5:c.158T>G	p.Phe53Cys	p.F53C	ENST00000307102	NM_002755.3	53	tTt/tGt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174404	11174404	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	181	458	0	ENST00000361445.4:c.7271A>C	p.Asp2424Ala	p.D2424A	ENST00000361445	NM_004958.3	2424	gAc/gCc																																																																															
NF1	4763	MSKCC	GRCh37	17	29554238	29554238	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0063134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	127	454	1	ENST00000358273.4:c.2254A>G	p.Arg752Gly	p.R752G	ENST00000358273	NM_001042492.2	752	Aga/Gga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	111	431	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	152	671	0	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	250	929	2	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	131	609	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	84	304	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	110	430	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	506	888	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
MPL	4352	MSKCC	GRCh37	1	43804953	43804953	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	229	560	1	ENST00000372470.3:c.408del	p.Ser137ValfsTer29	p.S137Vfs*29	ENST00000372470	NM_005373.2	135	Ccc/cc																																																																															
KDR	3791	MSKCC	GRCh37	4	55953855	55953856	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	135	549	0	ENST00000263923.4:c.3580_3581del	p.Leu1194AlafsTer15	p.L1194Afs*15	ENST00000263923	NM_002253.2	1194	CTg/g																																																																															
TET1	80312	MSKCC	GRCh37	10	70406043	70406043	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	147	568	1	ENST00000373644.4:c.3557T>C	p.Ile1186Thr	p.I1186T	ENST00000373644	NM_030625.2	1186	aTa/aCa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	39	726	4	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339111	65339111	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	62	685	6	ENST00000342505.4:c.425del	p.Lys142ArgfsTer26	p.K142Rfs*26	ENST00000342505	NM_002227.2	142	aAg/ag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	176	596	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	92	416	2	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005365	150005365	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs918439730		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	258	771	0	ENST00000253339.5:c.860G>A	p.Arg287Gln	p.R287Q	ENST00000253339		287	cGa/cAa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610612	10610612	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	49	731	0	ENST00000171111.5:c.98A>G	p.Tyr33Cys	p.Y33C	ENST00000171111	NM_203500.1	33	tAc/tGc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	130	605	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923086	39923087	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	185	639	0	ENST00000378444.4:c.3621dup	p.Gln1208ThrfsTer8	p.Q1208Tfs*8	ENST00000378444	NM_001123385.1	1207	-/A																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	64	694	8	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63845588	63845588	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774238244		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	168	558	0	ENST00000279873.7:c.1327C>T	p.Arg443Cys	p.R443C	ENST00000279873	NM_032199.2	443	Cgc/Tgc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	153	605	2	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	208	704	2	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	187	736	0	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	164	536	2	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123229301	123229301	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	16	383	0	ENST00000218089.9:c.3783+2T>C		p.X1261_splice	ENST00000218089	NM_001042749.1	1261																																																																																
STAT5B	6777	MSKCC	GRCh37	17	40370236	40370236	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764965457		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	131	691	12	ENST00000293328.3:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000293328	NM_012448.3	368	Cag/ag																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981861	101981863	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	210	695	0	ENST00000282441.5:c.286_288del	p.Phe96del	p.F96del	ENST00000282441	NM_001130145.2	94	tcCTTc/tcc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	175	695	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	203	715	1	ENST00000447079.4:c.4382del	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5225777	5225777	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751437578		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	196	605	0	ENST00000357368.4:c.2455G>A	p.Ala819Thr	p.A819T	ENST00000357368	NM_002850.3	819	Gct/Act																																																																															
ATM	472	MSKCC	GRCh37	11	108213958	108213959	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	138	491	0	ENST00000278616.4:c.8283_8284del	p.Gln2762AlafsTer6	p.Q2762Afs*6	ENST00000278616	NM_000051.3	2760	CTc/c																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627730	14627730	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	253	852	0	ENST00000254322.2:c.340A>G	p.Thr114Ala	p.T114A	ENST00000254322	NM_006145.1	114	Acc/Gcc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911460	134911460	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768101201		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	26	667	0	ENST00000398015.3:c.1925G>A	p.Gly642Asp	p.G642D	ENST00000398015	NM_004441.4	642	gGc/gAc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938543	44938543	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	109	417	0	ENST00000377967.4:c.3091A>G	p.Thr1031Ala	p.T1031A	ENST00000377967	NM_021140.2	1031	Aca/Gca																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	193	651	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17954643	17954643	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	217	777	1	ENST00000458235.1:c.251del	p.Pro84ArgfsTer63	p.P84Rfs*63	ENST00000458235	NM_000215.3	84	cCg/cg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740171	162740171	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs189206909		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	187	718	1	ENST00000367921.3:c.1373G>A	p.Arg458His	p.R458H	ENST00000367921	NM_006182.2	458	cGc/cAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346157	89346158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	159	800	1	ENST00000301030.4:c.6792dup	p.Ala2265ArgfsTer8	p.A2265Rfs*8	ENST00000301030	NM_001256183.1	2264	-/C																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533556	63533556	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147716924		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	231	764	0	ENST00000307078.5:c.1598C>T	p.Ala533Val	p.A533V	ENST00000307078	NM_004655.3	533	gCg/gTg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656917	45656917	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	217	700	0	ENST00000407780.3:c.239A>G	p.Tyr80Cys	p.Y80C	ENST00000407780	NM_001283052.1	80	tAc/tGc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48649561	48649561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	171	704	0	ENST00000376670.3:c.49del	p.Gln17SerfsTer120	p.Q17Sfs*120	ENST00000376670	NM_002049.3	15	ctC/ct																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25458619	25458619	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs746967478		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	130	561	0	ENST00000264709.3:c.2554A>G	p.Met852Val	p.M852V	ENST00000264709	NM_175629.2	852	Atg/Gtg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942053	71942053	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	58	831	2	ENST00000298229.2:c.1322del	p.Asn441ThrfsTer2	p.N441Tfs*2	ENST00000298229	NM_001567.3	439	ccA/cc																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733329	85733329	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1052221974		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	122	497	0	ENST00000370580.1:c.683G>A	p.Arg228His	p.R228H	ENST00000370580	NM_003921.4	228	cGt/cAt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	242	756	4	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	173	408	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871757	12871757	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	159	537	0	ENST00000228872.4:c.476-2A>G		p.X159_splice	ENST00000228872	NM_004064.3	159																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118392634	118392634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	168	572	1	ENST00000534358.1:c.11666G>A	p.Arg3889Gln	p.R3889Q	ENST00000534358	NM_005933.3	3889	cGa/cAa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156541	55156541	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368266633		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	136	563	0	ENST00000257290.5:c.2942G>A	p.Arg981His	p.R981H	ENST00000257290	NM_006206.4	981	cGt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	248	847	2	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266175	198266175	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	17	442	1	ENST00000335508.6:c.2445del	p.Phe815LeufsTer19	p.F815Lfs*19	ENST00000335508	NM_012433.2	815	ttT/tt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639273	3639273	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760286353		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	207	737	0	ENST00000294008.3:c.4366C>T	p.Arg1456Cys	p.R1456C	ENST00000294008	NM_032444.2	1456	Cgc/Tgc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38631981	38631981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1255149646		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	18	414	2	ENST00000299084.4:c.471del	p.Gln158SerfsTer16	p.Q158Sfs*16	ENST00000299084	NM_152594.2	156	cTt/ct																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821353	72821353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	114	456	2	ENST00000268489.5:c.10822G>A	p.Ala3608Thr	p.A3608T	ENST00000268489	NM_006885.3	3608	Gct/Act																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15975514	15975514	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	35	427	0	ENST00000268712.3:c.3840del	p.Ser1281ValfsTer16	p.S1281Vfs*16	ENST00000268712	NM_006311.3	1280	ggG/gg																																																																															
CDK4	1019	MSKCC	GRCh37	12	58143021	58143021	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587778188		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	84	695	0	ENST00000257904.6:c.763C>T	p.Arg255Cys	p.R255C	ENST00000257904	NM_000075.3	255	Cgc/Tgc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158634731	158634731	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748791232		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	197	641	1	ENST00000263640.3:c.455G>A	p.Arg152His	p.R152H	ENST00000263640	NM_001105.4	152	cGc/cAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248692	212248692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	174	680	0	ENST00000342788.4:c.3575C>T	p.Ser1192Phe	p.S1192F	ENST00000342788	NM_005235.2	1192	tCc/tTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549454	187549454	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201060026		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	227	646	0	ENST00000441802.2:c.4664C>T	p.Thr1555Met	p.T1555M	ENST00000441802	NM_005245.3	1555	aCg/aTg																																																																															
AKT1	207	MSKCC	GRCh37	14	105242073	105242075	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs768025881		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	169	697	6	ENST00000349310.3:c.349_351del	p.Glu117del	p.E117del	ENST00000349310	NM_001014432.1	117	GAG/-																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164451	36164451	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	123	480	0	ENST00000300305.3:c.1424C>A	p.Ala475Asp	p.A475D	ENST00000300305		475	gCc/gAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778977	3778977	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745551441		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	146	854	0	ENST00000262367.5:c.6071C>T	p.Ala2024Val	p.A2024V	ENST00000262367	NM_004380.2	2024	gCg/gTg																																																																															
ALK	238	MSKCC	GRCh37	2	29462662	29462662	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762395127		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	203	667	2	ENST00000389048.3:c.2239G>A	p.Gly747Arg	p.G747R	ENST00000389048	NM_004304.4	747	Ggg/Agg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288852	33288852	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767991311		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	210	651	0	ENST00000374542.5:c.700C>T	p.Arg234Cys	p.R234C	ENST00000374542	NM_001141970.1	234	Cgc/Tgc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251265	99251265	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760481311		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	105	671	1	ENST00000268035.6:c.569C>T	p.Pro190Leu	p.P190L	ENST00000268035	NM_000875.3	190	cCg/cTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16097805	16097805	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	147	497	0	ENST00000268712.3:c.79T>C	p.Tyr27His	p.Y27H	ENST00000268712	NM_006311.3	27	Tat/Cat																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599964	10599964	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1364007421		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	226	687	0	ENST00000171111.5:c.1612G>A	p.Asp538Asn	p.D538N	ENST00000171111	NM_203500.1	538	Gat/Aat																																																																															
GNB1	2782	MSKCC	GRCh37	1	1749278	1749279	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	132	465	0	ENST00000378609.4:c.93_94del	p.Gln32AspfsTer46	p.Q32Dfs*46	ENST00000378609	NM_002074.3	31	tcTCag/tcag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	258	548	30	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538820	23538820	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753524833		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	185	581	0	ENST00000380871.4:c.619C>T	p.Arg207Trp	p.R207W	ENST00000380871	NM_006167.3	207	Cgg/Tgg																																																																															
AR	367	MSKCC	GRCh37	X	66766357	66766362	+	inframe_deletion	In_Frame_Del	DEL	GGCGGC	GGCGGC	-	rs1270862027		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	23	336	2	ENST00000374690.3:c.1415_1420del	p.Gly472_Gly473del	p.G472_G473del	ENST00000374690	NM_000044.3	457	GGCGGC/-																																																																															
MTOR	2475	MSKCC	GRCh37	1	11303219	11303219	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	40	671	0	ENST00000361445.4:c.1364T>C	p.Val455Ala	p.V455A	ENST00000361445	NM_004958.3	455	gTg/gCg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106855	27106855	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1191962249		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	231	796	0	ENST00000324856.7:c.6466A>G	p.Ser2156Gly	p.S2156G	ENST00000324856	NM_006015.4	2156	Agt/Ggt																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797873	45797873	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	42	803	0	ENST00000372115.3:c.856T>C	p.Cys286Arg	p.C286R	ENST00000372115	NM_001048171.1	286	Tgc/Cgc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65332604	65332604	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs914598730		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	25	571	0	ENST00000342505.4:c.935A>G	p.Tyr312Cys	p.Y312C	ENST00000342505	NM_002227.2	312	tAc/tGc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65332808	65332808	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	129	487	0	ENST00000342505.4:c.731del	p.Phe244SerfsTer5	p.F244Sfs*5	ENST00000342505	NM_002227.2	244	tTc/tc																																																																															
TET1	80312	MSKCC	GRCh37	10	70446293	70446293	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	87	678	0	ENST00000373644.4:c.5233A>G	p.Thr1745Ala	p.T1745A	ENST00000373644	NM_030625.2	1745	Acg/Gcg																																																																															
HRAS	3265	MSKCC	GRCh37	11	534225	534225	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	150	595	0	ENST00000311189.7:c.98A>G	p.Asp33Gly	p.D33G	ENST00000311189		33	gAc/gGc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936038	71936038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	164	515	0	ENST00000298229.2:c.10G>A	p.Ala4Thr	p.A4T	ENST00000298229	NM_001567.3	4	Gcc/Acc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942602	71942602	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	45	559	0	ENST00000298229.2:c.1558A>C	p.Asn520His	p.N520H	ENST00000298229	NM_001567.3	520	Aac/Cac																																																																															
ATM	472	MSKCC	GRCh37	11	108163389	108163389	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	114	507	0	ENST00000278616.4:c.4480T>A	p.Cys1494Ser	p.C1494S	ENST00000278616	NM_000051.3	1494	Tgt/Agt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380238	25380238	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs770020203		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	116	454	0	ENST00000256078.4:c.220A>G	p.Thr74Ala	p.T74A	ENST00000256078	NM_033360.2	74	Act/Gct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380267	25380267	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	133	493	0	ENST00000256078.4:c.191A>G	p.Tyr64Cys	p.Y64C	ENST00000256078	NM_033360.2	64	tAc/tGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420996	49420996	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	40	631	0	ENST00000301067.7:c.14753del	p.Pro4918LeufsTer77	p.P4918Lfs*77	ENST00000301067	NM_003482.3	4918	cCt/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444888	49444888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	71	898	0	ENST00000301067.7:c.2578C>A	p.Leu860Met	p.L860M	ENST00000301067	NM_003482.3	860	Ctg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445484	49445484	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769580238		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	48	864	1	ENST00000301067.7:c.1982G>A	p.Arg661His	p.R661H	ENST00000301067	NM_003482.3	661	cGc/cAc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489493	56489493	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	153	555	0	ENST00000267101.3:c.1958T>C	p.Val653Ala	p.V653A	ENST00000267101	NM_001982.3	653	gTa/gCa																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856610	111856610	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	28	638	0	ENST00000341259.2:c.661A>G	p.Arg221Gly	p.R221G	ENST00000341259	NM_005475.2	221	Agg/Ggg																																																																															
MSI1	4440	MSKCC	GRCh37	12	120794791	120794791	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	206	614	0	ENST00000257552.2:c.566T>C	p.Val189Ala	p.V189A	ENST00000257552	NM_002442.3	189	gTg/gCg																																																																															
POLE	5426	MSKCC	GRCh37	12	133245468	133245468	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1377657524		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	200	673	0	ENST00000320574.5:c.1852G>A	p.Glu618Lys	p.E618K	ENST00000320574	NM_006231.2	618	Gag/Aag																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873824	35873824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	179	519	0	ENST00000216797.5:c.27G>T	p.Gln9His	p.Q9H	ENST00000216797	NM_020529.2	9	caG/caT																																																																															
RAD51B	5890	MSKCC	GRCh37	14	69061215	69061215	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	102	341	0	ENST00000487270.1:c.1050C>A	p.Cys350Ter	p.C350*	ENST00000487270	NM_133509.3	350	tgC/tgA																																																																															
DICER1	23405	MSKCC	GRCh37	14	95597849	95597849	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	24	432	0	ENST00000343455.3:c.435C>A	p.His145Gln	p.H145Q	ENST00000343455	NM_177438.2	145	caC/caA																																																																															
AKT1	207	MSKCC	GRCh37	14	105239339	105239341	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	253	862	1	ENST00000349310.3:c.1046_1048del	p.Phe349del	p.F349del	ENST00000349310	NM_001014432.1	349	tTCTac/tac																																																																															
MGA	23269	MSKCC	GRCh37	15	42041441	42041441	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	222	667	0	ENST00000219905.7:c.5636T>C	p.Val1879Ala	p.V1879A	ENST00000219905	NM_001164273.1	1879	gTt/gCt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347072	347072	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	158	482	0	ENST00000262320.3:c.1939C>A	p.Arg647Ser	p.R647S	ENST00000262320	NM_003502.3	647	Cgc/Agc																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2096190	2096190	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	56	587	0	ENST00000219066.1:c.317A>C	p.Lys106Thr	p.K106T	ENST00000219066	NM_002528.5	106	aAg/aCg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3642733	3642733	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	173	632	0	ENST00000294008.3:c.2294G>T	p.Gly765Val	p.G765V	ENST00000294008	NM_032444.2	765	gGc/gTc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14026108	14026108	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs775161827		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	61	429	0	ENST00000311895.7:c.1068A>C	p.Lys356Asn	p.K356N	ENST00000311895	NM_005236.2	356	aaA/aaC																																																																															
NF1	4763	MSKCC	GRCh37	17	29422365	29422365	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	35	460	0	ENST00000358273.4:c.38T>C	p.Val13Ala	p.V13A	ENST00000358273	NM_001042492.2	13	gTg/gCg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78867629	78867629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	205	711	0	ENST00000306801.3:c.2365C>T	p.Arg789Cys	p.R789C	ENST00000306801	NM_020761.2	789	Cgc/Tgc																																																																															
YES1	7525	MSKCC	GRCh37	18	756689	756689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	177	638	0	ENST00000314574.4:c.139G>A	p.Ala47Thr	p.A47T	ENST00000314574	NM_005433.3	47	Gca/Aca																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2206754	2206754	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	25	531	0	ENST00000398665.3:c.814T>A	p.Phe272Ile	p.F272I	ENST00000398665	NM_032482.2	272	Ttt/Att																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6213975	6213976	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs772076449		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	110	671	0	ENST00000252674.7:c.1381dup	p.Gln461ProfsTer23	p.Q461Pfs*23	ENST00000252674	NM_005934.3	461	cag/cCag																																																																															
INSR	3643	MSKCC	GRCh37	19	7132219	7132219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	198	691	2	ENST00000302850.5:c.2792C>T	p.Ala931Val	p.A931V	ENST00000302850	NM_000208.2	931	gCg/gTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354014	15354014	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1175491600		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	72	249	0	ENST00000263377.2:c.2866C>G	p.Pro956Ala	p.P956A	ENST00000263377	NM_058243.2	956	Ccc/Gcc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367010	15367010	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	57	546	0	ENST00000263377.2:c.1616A>G	p.Lys539Arg	p.K539R	ENST00000263377	NM_058243.2	539	aAg/aGg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976890	18976890	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	207	575	1	ENST00000262803.5:c.3275A>G	p.Asp1092Gly	p.D1092G	ENST00000262803	NM_002911.3	1092	gAc/gGc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211298	36211298	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	197	774	0	ENST00000222270.7:c.1049G>T	p.Gly350Val	p.G350V	ENST00000222270	NM_014727.1	350	gGg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223671	36223671	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368981212		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	234	862	0	ENST00000222270.7:c.6221C>T	p.Ala2074Val	p.A2074V	ENST00000222270	NM_014727.1	2074	gCg/gTg																																																																															
AXL	558	MSKCC	GRCh37	19	41727865	41727865	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774284669		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	187	670	0	ENST00000301178.4:c.490G>A	p.Gly164Arg	p.G164R	ENST00000301178	NM_021913.4	164	Gga/Aga																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45864812	45864815	+	frameshift_variant	Frame_Shift_Del	DEL	AGTT	AGTT	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	250	747	0	ENST00000391945.4:c.1204_1207del	p.Asn402LeufsTer81	p.N402Lfs*81	ENST00000391945	NM_000400.3	402	AACTtt/tt																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867574	45867574	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs755766334		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	75	877	0	ENST00000391945.4:c.734A>G	p.Asp245Gly	p.D245G	ENST00000391945	NM_000400.3	245	gAc/gGc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422638	47422638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	57	607	1	ENST00000404338.3:c.706G>A	p.Val236Met	p.V236M	ENST00000404338	NM_004491.4	236	Gtg/Atg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47641436	47641436	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	137	361	0	ENST00000233146.2:c.821T>G	p.Ile274Ser	p.I274S	ENST00000233146	NM_000251.2	274	aTc/aGc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61721133	61721133	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs753951461		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	147	521	0	ENST00000401558.2:c.1141T>C	p.Tyr381His	p.Y381H	ENST00000401558	NM_003400.3	381	Tat/Cat																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096034	178096034	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	220	691	0	ENST00000397062.3:c.1297A>G	p.Ser433Gly	p.S433G	ENST00000397062	NM_006164.4	433	Agt/Ggt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267716	198267716	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	18	466	0	ENST00000335508.6:c.1763A>G	p.Tyr588Cys	p.Y588C	ENST00000335508	NM_012433.2	588	tAt/tGt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403247	213403247	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	28	602	0	ENST00000342788.4:c.8C>A	p.Pro3Gln	p.P3Q	ENST00000342788	NM_005235.2	3	cCg/cAg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279824	29279825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			22	134	160	0	ENST00000544604.2:c.70_71insT	p.Arg24LeufsTer85	p.R24Lfs*85	ENST00000544604	NM_001206998.1	24	cgc/cTgc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732924	30732924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	187	557	0	ENST00000359013.4:c.1612G>A	p.Val538Met	p.V538M	ENST00000359013	NM_001024847.2	538	Gtg/Atg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37042480	37042480	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs63751069		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	13	390	0	ENST00000231790.2:c.242C>T	p.Thr81Ile	p.T81I	ENST00000231790	NM_000249.3	81	aCt/aTt																																																																															
RHOA	387	MSKCC	GRCh37	3	49399942	49399942	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1420305556		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	202	546	0	ENST00000418115.1:c.395C>T	p.Ala132Val	p.A132V	ENST00000418115	NM_001664.2	132	gCc/gTc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63982080	63982080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	53	726	0	ENST00000295900.6:c.2582C>T	p.Ala861Val	p.A861V	ENST00000295900	NM_000333.3	861	gCc/gTc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63985181	63985181	+	3_prime_UTR_variant	3'UTR	DEL	T	T	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	44	592	0	ENST00000295900.6:c.*41del			ENST00000295900	NM_000333.3																																																																																	
GATA2	2624	MSKCC	GRCh37	3	128200784	128200784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	149	538	0	ENST00000341105.2:c.1021G>T	p.Ala341Ser	p.A341S	ENST00000341105	NM_032638.4	341	Gcc/Tcc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204800	128204800	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	183	705	1	ENST00000341105.2:c.641A>G	p.Gln214Arg	p.Q214R	ENST00000341105	NM_032638.4	214	cAg/cGg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138431115	138431115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	43	370	1	ENST00000289153.2:c.1334T>C	p.Val445Ala	p.V445A	ENST00000289153	NM_006219.2	445	gTt/gCt																																																																															
BCL6	604	MSKCC	GRCh37	3	187446919	187446919	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	58	826	0	ENST00000232014.4:c.1274T>C	p.Leu425Pro	p.L425P	ENST00000232014	NM_001130845.1	425	cTc/cCc																																																																															
KIT	3815	MSKCC	GRCh37	4	55524237	55524237	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747253141		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	153	683	0	ENST00000288135.5:c.56G>A	p.Arg19His	p.R19H	ENST00000288135	NM_000222.2	19	cGc/cAc																																																																															
REST	5978	MSKCC	GRCh37	4	57796907	57796907	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	36	813	0	ENST00000309042.7:c.1883T>C	p.Val628Ala	p.V628A	ENST00000309042	NM_005612.4	628	gTg/gCg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143352337	143352337	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	135	411	0	ENST00000262992.4:c.76del	p.Asp26ThrfsTer34	p.D26Tfs*34	ENST00000262992	NM_001101669.1	26	Gac/ac																																																																															
GAB1	2549	MSKCC	GRCh37	4	144336649	144336649	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	132	407	0	ENST00000262994.4:c.92T>C	p.Phe31Ser	p.F31S	ENST00000262994	NM_002039.3	31	tTc/tCc																																																																															
TERT	7015	MSKCC	GRCh37	5	1296374	1296374	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	19	429	0				ENST00000310581	NM_198253.2																																																																																	
RASA1	5921	MSKCC	GRCh37	5	86564497	86564497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	228	758	0	ENST00000274376.6:c.229G>A	p.Val77Met	p.V77M	ENST00000274376	NM_002890.2	77	Gtg/Atg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672795	86672795	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	27	489	0	ENST00000274376.6:c.2282T>C	p.Leu761Pro	p.L761P	ENST00000274376	NM_002890.2	761	cTt/cCt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131973792	131973792	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	41	370	0	ENST00000265335.6:c.3495A>G	p.Ile1165Met	p.I1165M	ENST00000265335		1165	atA/atG																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149439426	149439426	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	183	522	0	ENST00000286301.3:c.1970-1G>T		p.X657_splice	ENST00000286301	NM_005211.3	657																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176523182	176523182	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	248	849	0	ENST00000292408.4:c.1944+2T>C		p.X648_splice	ENST00000292408	NM_213647.1	648																																																																																
FLT4	2324	MSKCC	GRCh37	5	180039597	180039597	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	192	631	0	ENST00000261937.6:c.3446T>C	p.Leu1149Pro	p.L1149P	ENST00000261937	NM_182925.4	1149	cTg/cCg																																																																															
IRF4	3662	MSKCC	GRCh37	6	401714	401714	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1400777715		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	270	915	0	ENST00000380956.4:c.1036C>T	p.Arg346Trp	p.R346W	ENST00000380956	NM_001195286.1	346	Cgg/Tgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187497	32187497	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780911923		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	273	818	0	ENST00000375023.3:c.1382G>A	p.Cys461Tyr	p.C461Y	ENST00000375023	NM_004557.3	461	tGc/tAc																																																																															
PIM1	5292	MSKCC	GRCh37	6	37141833	37141833	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	213	637	0	ENST00000373509.5:c.908A>G	p.His303Arg	p.H303R	ENST00000373509	NM_002648.3	303	cAc/cGc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129255	152129255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	171	672	0	ENST00000206249.3:c.208G>A	p.Ala70Thr	p.A70T	ENST00000206249	NM_000125.3	70	Gcg/Acg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522329	157522329	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	42	803	0	ENST00000346085.5:c.4601G>T	p.Arg1534Leu	p.R1534L	ENST00000346085	NM_020732.3	1534	cGc/cTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249008	55249008	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	32	705	0	ENST00000275493.2:c.2306T>C	p.Val769Ala	p.V769A	ENST00000275493	NM_005228.3	769	gTg/gCg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508670	106508670	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	26	599	0	ENST00000359195.3:c.664A>G	p.Ile222Val	p.I222V	ENST00000359195	NM_002649.2	222	Atc/Gtc																																																																															
POT1	25913	MSKCC	GRCh37	7	124532409	124532409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	12	303	0	ENST00000357628.3:c.35C>T	p.Thr12Ile	p.T12I	ENST00000357628	NM_015450.2	12	aCa/aTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859422	151859422	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	195	705	0	ENST00000262189.6:c.11240A>G	p.Asn3747Ser	p.N3747S	ENST00000262189	NM_170606.2	3747	aAc/aGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945040	151945040	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	33	323	0	ENST00000262189.6:c.2479A>G	p.Lys827Glu	p.K827E	ENST00000262189	NM_170606.2	827	Aaa/Gaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020519	69020519	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781428016		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	129	467	0	ENST00000288368.4:c.2891G>A	p.Ser964Asn	p.S964N	ENST00000288368	NM_024870.2	964	aGc/aAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104648	69104648	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	178	598	0	ENST00000288368.4:c.4492T>G	p.Cys1498Gly	p.C1498G	ENST00000288368	NM_024870.2	1498	Tgt/Ggt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739313	145739313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	222	679	0	ENST00000428558.2:c.2057A>G	p.Gln686Arg	p.Q686R	ENST00000428558	NM_004260.3	686	cAg/cGg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742434	145742434	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs544163984		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	436	719	0	ENST00000428558.2:c.354G>T	p.Gln118His	p.Q118H	ENST00000428558	NM_004260.3	118	caG/caT																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2039826	2039826	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs752254994		P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	35	776	1	ENST00000349721.2:c.716C>A	p.Pro239Gln	p.P239Q	ENST00000349721	NM_003070.3	239	cCg/cAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404579	8404579	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	112	453	0	ENST00000356435.5:c.4168A>G	p.Ile1390Val	p.I1390V	ENST00000356435		1390	Atc/Gtc																																																																															
TEK	7010	MSKCC	GRCh37	9	27202905	27202905	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	129	578	0	ENST00000380036.4:c.1997C>A	p.Ser666Tyr	p.S666Y	ENST00000380036	NM_000459.3	666	tCt/tAt																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80409450	80409450	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	69	228	0	ENST00000286548.4:c.664A>G	p.Asn222Asp	p.N222D	ENST00000286548	NM_002072.3	222	Aat/Gat																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923154	39923154	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	29	616	0	ENST00000378444.4:c.3554A>G	p.Asp1185Gly	p.D1185G	ENST00000378444	NM_001123385.1	1185	gAc/gGc																																																																															
XIAP	331	MSKCC	GRCh37	X	123034519	123034519	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	93	265	0	ENST00000355640.3:c.1276T>A	p.Ser426Thr	p.S426T	ENST00000355640		426	Tca/Aca																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858068	152858068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063155-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	219	695	0	ENST00000406277.2:c.547C>T	p.Arg183Cys	p.R183C	ENST00000406277	NM_152274.4	183	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0063206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	150	704	0	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591924	48591924	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs377767348		P-0063206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	121	530	0	ENST00000342988.3:c.1087T>C	p.Cys363Arg	p.C363R	ENST00000342988	NM_005359.5	363	Tgt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	104	539	0	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175153	112175153	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	99	542	0	ENST00000257430.4:c.3863del	p.Gly1288AspfsTer17	p.G1288Dfs*17	ENST00000257430	NM_000038.5	1288	Gga/ga																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515167	31515169	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-	rs760849334		P-0063206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	97	549	2	ENST00000344624.3:c.1216_1218del	p.Glu406del	p.E406del	ENST00000344624		406	GAA/-																																																																															
TET2	54790	MSKCC	GRCh37	4	106156840	106156840	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs560827535		P-0063206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	121	653	0	ENST00000380013.4:c.1741C>T	p.Arg581Cys	p.R581C	ENST00000380013	NM_001127208.2	581	Cgt/Tgt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932254	36932254	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0063206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	147	682	0	ENST00000361632.4:c.2215C>T	p.Gln739Ter	p.Q739*	ENST00000361632		739	Cag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29663652	29663652	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0063206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	55	381	0	ENST00000358273.4:c.6148-1G>A		p.X2050_splice	ENST00000358273	NM_001042492.2	2050																																																																																
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0063289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	163	529	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0063289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	121	412	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
TSC1	7248	MSKCC	GRCh37	9	135779129	135779129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	109	462	0	ENST00000298552.3:c.2117G>A	p.Arg706His	p.R706H	ENST00000298552	NM_001162426.1	706	cGt/cAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42050032	42050032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0063289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	74	226	0	ENST00000219905.7:c.7186C>T	p.Arg2396Ter	p.R2396*	ENST00000219905	NM_001164273.1	2396	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0063289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	172	528	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
SOX17	64321	MSKCC	GRCh37	8	55371728	55371728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	36	526	0	ENST00000297316.4:c.418C>T	p.Arg140Trp	p.R140W	ENST00000297316	NM_022454.3	140	Cgg/Tgg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986757	36986757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	125	450	0	ENST00000354822.5:c.932G>T	p.Ser311Ile	p.S311I	ENST00000354822	NM_001079668.2	311	aGc/aTc																																																																															
B2M	567	MSKCC	GRCh37	15	45007692	45007693	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0063289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	62	481	0	ENST00000558401.1:c.140dup	p.Ser48ValfsTer9	p.S48Vfs*9	ENST00000558401	NM_004048.2	47	gtg/gTtg																																																																															
CIC	23152	MSKCC	GRCh37	19	42798399	42798399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	208	482	0	ENST00000575354.2:c.4270C>T	p.Pro1424Ser	p.P1424S	ENST00000575354	NM_015125.3	1424	Ccc/Tcc																																																																															
ALK	238	MSKCC	GRCh37	2	29462553	29462553	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748009427		P-0063289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	61	477	0	ENST00000389048.3:c.2348G>A	p.Cys783Tyr	p.C783Y	ENST00000389048	NM_004304.4	783	tGc/tAc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2033051	2033051	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs374114848		P-0063289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	26	430	0	ENST00000349721.2:c.325C>G	p.Pro109Ala	p.P109A	ENST00000349721	NM_003070.3	109	Ccc/Gcc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453139	+	missense_variant	Missense_Mutation	ONP	ACTG	ACTG	TCTC			P-0063289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	106	314	0	ENST00000288602.6:c.1796_1799delinsGAGA	p.Thr599_Val600delinsArgGlu	p.T599_V600delinsRE	ENST00000288602	NM_004333.4	599	aCAGTg/aGAGAg																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0063328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	460	521	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231238	98231238	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1366288601		P-0063328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			760	158	644	0	ENST00000331920.6:c.2045G>A	p.Arg682His	p.R682H	ENST00000331920	NM_000264.3	682	cGc/cAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857680	9857680	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1303700994		P-0063328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			815	133	624	1	ENST00000330684.3:c.3721C>T	p.Arg1241Trp	p.R1241W	ENST00000330684	NM_001134407.1	1241	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0063328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	504	529	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
HIST1H1C	3006	MSKCC	GRCh37	6	26056053	26056067	+	inframe_deletion	In_Frame_Del	DEL	CCTTGGGCTTAGCGG	CCTTGGGCTTAGCGG	-	rs756916945		P-0063328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	42	536	0	ENST00000343677.2:c.590_604del	p.Ala197_Lys201del	p.A197_K201del	ENST00000343677	NM_005319.3	197	gCCGCTAAGCCCAAGGtt/gtt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951899	178951899	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0063328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	125	325	0	ENST00000263967.3:c.2954A>C	p.Tyr985Ser	p.Y985S	ENST00000263967	NM_006218.2	985	tAc/tCc																																																																															
ATRX	546	MSKCC	GRCh37	X	76855249	76855249	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0063328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	29	281	0	ENST00000373344.5:c.5738C>G	p.Ser1913Ter	p.S1913*	ENST00000373344	NM_000489.3	1913	tCa/tGa																																																																															
CARM1	10498	MSKCC	GRCh37	19	11024679	11024679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	156	668	0	ENST00000327064.4:c.796G>A	p.Glu266Lys	p.E266K	ENST00000327064	NM_199141.1	266	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574002	7574007	+	inframe_deletion	In_Frame_Del	DEL	CGGAAC	CGGAAC	-			P-0063376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	107	597	0	ENST00000269305.4:c.1020_1025del	p.Met340_Arg342delinsIle	p.M340_R342delinsI	ENST00000269305	NM_001126112.2	340	atGTTCCGa/ata																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120053	70120053	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	182	698	0	ENST00000245479.2:c.1058del	p.Pro353ArgfsTer30	p.P353Rfs*30	ENST00000245479	NM_000346.3	352	gCc/gc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275630	41275630	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0063376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	201	625	0	ENST00000349496.5:c.1525G>T	p.Ala509Ser	p.A509S	ENST00000349496	NM_001904.3	509	Gct/Tct																																																																															
APC	324	MSKCC	GRCh37	5	112174048	112174048	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	190	626	0	ENST00000257430.4:c.2759del	p.Asn920MetfsTer35	p.N920Mfs*35	ENST00000257430	NM_000038.5	919	agA/ag																																																																															
APC	324	MSKCC	GRCh37	5	112175217	112175218	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0063376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	92	629	0	ENST00000257430.4:c.3928_3929del	p.Lys1310AspfsTer4	p.K1310Dfs*4	ENST00000257430	NM_000038.5	1309	gAA/g																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0063407-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	96	279	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063407-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	91	543	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578509	7578509	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519978		P-0063407-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	287	721	0	ENST00000269305.4:c.421T>G	p.Cys141Gly	p.C141G	ENST00000269305	NM_001126112.2	141	Tgc/Ggc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0063407-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	285	279	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55130023	55130023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063407-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	124	664	0	ENST00000257290.5:c.557C>T	p.Pro186Leu	p.P186L	ENST00000257290	NM_006206.4	186	cCc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112170787	112170788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0063407-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	142	516	0	ENST00000257430.4:c.1886dup	p.Leu629PhefsTer5	p.L629Ffs*5	ENST00000257430	NM_000038.5	628	act/acTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040911	47040911	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	66	350	0	ENST00000329236.7:c.1207G>T	p.Glu403Ter	p.E403*	ENST00000329236	NM_001204466.1	403	Gag/Tag																																																																															
INSR	3643	MSKCC	GRCh37	19	7167980	7167980	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0063438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	48	373	0	ENST00000302850.5:c.1609G>A	p.Ala537Thr	p.A537T	ENST00000302850	NM_000208.2	537	Gcc/Acc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898320	63898320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	35	474	0	ENST00000295900.6:c.46G>T	p.Ala16Ser	p.A16S	ENST00000295900	NM_000333.3	16	Gcg/Tcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0063438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	31	265	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557732	21557732	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	50	510	0	ENST00000382592.4:c.2113C>G	p.Leu705Val	p.L705V	ENST00000382592	NM_014572.2	705	Ctg/Gtg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43773212	43773212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	52	454	0	ENST00000382044.4:c.380G>T	p.Gly127Val	p.G127V	ENST00000382044	NM_001141980.1	127	gGa/gTa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89337277	89337288	+	inframe_deletion	In_Frame_Del	DEL	CGGGCGTTGAAA	CGGGCGTTGAAA	-			P-0063438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	49	336	0	ENST00000301030.4:c.7743_7754del	p.Phe2582_Arg2585del	p.F2582_R2585del	ENST00000301030	NM_001256183.1	2581	cgTTTCAACGCCCGc/cgc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246491	41246491	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	68	588	0	ENST00000357654.3:c.1057T>C	p.Trp353Arg	p.W353R	ENST00000357654	NM_007294.3	353	Tgg/Cgg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10252859	10252859	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	46	510	1	ENST00000340748.4:c.3106C>A	p.His1036Asn	p.H1036N	ENST00000340748		1036	Cac/Aac																																																																															
MST1R	4486	MSKCC	GRCh37	3	49935054	49935054	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	48	713	0	ENST00000296474.3:c.1945G>T	p.Ala649Ser	p.A649S	ENST00000296474	NM_002447.2	649	Gca/Tca																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876487	35876487	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0063438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	74	576	0	ENST00000303115.3:c.1279A>T	p.Thr427Ser	p.T427S	ENST00000303115	NM_002185.3	427	Aca/Tca																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402594	20402595	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGC	rs771457578		P-0063438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	31	588	0	ENST00000346618.3:c.147_149dup	p.Ala53dup	p.A53dup	ENST00000346618	NM_001949.4	53	ttc/ttCGCc																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31238849	31238849	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0063438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	51	631	0	ENST00000376228.5:c.619+1G>C		p.X207_splice	ENST00000376228	NM_002117.5	207																																																																																
INHBA	3624	MSKCC	GRCh37	7	41729529	41729529	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs138538132		P-0063438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	59	592	0	ENST00000242208.4:c.1000G>T	p.Gly334Cys	p.G334C	ENST00000242208	NM_002192.2	334	Ggc/Tgc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508384	106508384	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	63	515	0	ENST00000359195.3:c.378G>T	p.Lys126Asn	p.K126N	ENST00000359195	NM_002649.2	126	aaG/aaT																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53230753	53230760	+	frameshift_variant	Frame_Shift_Del	DEL	TAGACGCC	TAGACGCC	-			P-0063438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	25	229	0	ENST00000375401.3:c.2033_2040del	p.Arg678ProfsTer13	p.R678Pfs*13	ENST00000375401	NM_004187.3	678	cGGCGTCTA/c																																																																															
MED12	9968	MSKCC	GRCh37	X	70352765	70352765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	55	213	0	ENST00000374080.3:c.4486C>A	p.Arg1496Ser	p.R1496S	ENST00000374080		1496	Cgc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578277	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0063486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			706	25	855	0	ENST00000269305.4:c.572_574del	p.Pro191del	p.P191del	ENST00000269305	NM_001126112.2	191	cCTCag/cag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041563	47041563	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	G			P-0063486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	86	383	0	ENST00000329236.7:c.1554T>G	p.Tyr518Ter	p.Y518*	ENST00000329236	NM_001204466.1	518	taT/taG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0063486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	63	681	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238941	5238941	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs913402227		P-0063486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	56	762	0	ENST00000357368.4:c.1838C>T	p.Thr613Met	p.T613M	ENST00000357368	NM_002850.3	613	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112173600	112173600	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs1060503310		P-0063486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	35	500	0	ENST00000257430.4:c.2309C>G	p.Ser770Ter	p.S770*	ENST00000257430	NM_000038.5	770	tCa/tGa																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2097740	2097740	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1161055704		P-0063486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	40	699	0	ENST00000219066.1:c.109G>A	p.Gly37Arg	p.G37R	ENST00000219066	NM_002528.5	37	Ggg/Agg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2220651	2220651	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1226377975		P-0063486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			748	41	774	0	ENST00000326181.6:c.268A>T	p.Ile90Phe	p.I90F	ENST00000326181	NM_032271.2	90	Atc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131691026		P-0063527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	488	776	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112175746	112175746	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0063527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	352	631	0	ENST00000257430.4:c.4455del	p.Asp1486IlefsTer21	p.D1486Ifs*21	ENST00000257430	NM_000038.5	1485	gcT/gc																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045869	26045869	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			793	581	889	0	ENST00000540144.1:c.231G>C	p.Gln77His	p.Q77H	ENST00000540144	NM_003531.2	77	caG/caC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0063613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	105	264	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0063613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	379	655	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	184	612	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0063613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	627	463	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31395615	31395615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			978	190	798	0	ENST00000328111.2:c.2468G>A	p.Arg823His	p.R823H	ENST00000328111	NM_006892.3	823	cGt/cAt																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119720928	119720928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	218	434	0	ENST00000316626.5:c.247G>A	p.Ala83Thr	p.A83T	ENST00000316626		83	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0063613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	200	343	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56414922	56414922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	194	557	0	ENST00000348428.3:c.2323G>A	p.Asp775Asn	p.D775N	ENST00000348428	NM_006785.3	775	Gat/Aat																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468403	89468403	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0063613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	253	434	0	ENST00000336596.2:c.1937A>C	p.Lys646Thr	p.K646T	ENST00000336596	NM_005233.5	646	aAa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0063725-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	226	731	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0063725-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	77	211	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27102199	27102199	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0063725-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	95	628	0	ENST00000324856.7:c.5124+1G>T		p.X1708_splice	ENST00000324856	NM_006015.4	1708																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	66	209	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231783	36231783	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1057519748		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	70	389	0	ENST00000300305.3:c.601C>T	p.Arg201Ter	p.R201*	ENST00000300305		201	Cga/Tga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339111	65339111	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	79	351	2	ENST00000342505.4:c.425del	p.Lys142ArgfsTer26	p.K142Rfs*26	ENST00000342505	NM_002227.2	142	aAg/ag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40747084	40747084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762809890		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	43	297	0	ENST00000373198.4:c.2998G>A	p.Ala1000Thr	p.A1000T	ENST00000373198	NM_133170.3	1000	Gcc/Acc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	39	319	0	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	63	368	0	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																															
CDH1	999	MSKCC	GRCh37	16	68835780	68835781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	30	317	0	ENST00000261769.5:c.377dup	p.Pro127AlafsTer41	p.P127Afs*41	ENST00000261769	NM_004360.3	124	cgc/cgCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780068		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	60	405	0	ENST00000269305.4:c.472C>T	p.Arg158Cys	p.R158C	ENST00000269305	NM_001126112.2	158	Cgc/Tgc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535450	66535450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	39	222	0	ENST00000273854.3:c.11C>T	p.Ser4Leu	p.S4L	ENST00000273854	NM_004439.5	4	tCg/tTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047906	180047906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	50	429	0	ENST00000261937.6:c.2269G>A	p.Val757Ile	p.V757I	ENST00000261937	NM_182925.4	757	Gtc/Atc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs769210858		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	55	332	2	ENST00000361632.4:c.1404del	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533932	63533932	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749846538		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	53	385	0	ENST00000307078.5:c.1222G>A	p.Glu408Lys	p.E408K	ENST00000307078	NM_004655.3	408	Gag/Aag																																																																															
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	69	350	0	ENST00000575354.2:c.3743del	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395287	139395287	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs545259523		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	52	291	1	ENST00000277541.6:c.5651C>T	p.Pro1884Leu	p.P1884L	ENST00000277541	NM_017617.3	1884	cCg/cTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993013	72993014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	46	333	0	ENST00000268489.5:c.1031dup	p.Asn344LysfsTer13	p.N344Kfs*13	ENST00000268489	NM_006885.3	344	aac/aaAc																																																																															
ABL1	25	MSKCC	GRCh37	9	133760714	133760714	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755821709		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	129	370	0	ENST00000318560.5:c.3037C>T	p.Arg1013Trp	p.R1013W	ENST00000318560	NM_005157.4	1013	Cgg/Tgg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1297203260		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	52	330	0	ENST00000245479.2:c.916del	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104263974	104263974	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	39	272	1	ENST00000369902.3:c.71del	p.Pro24ArgfsTer72	p.P24Rfs*72	ENST00000369902	NM_016169.3	22	gCc/gc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127709	64127709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	63	333	0	ENST00000334205.4:c.202C>T	p.Arg68Cys	p.R68C	ENST00000334205	NM_003942.2	68	Cgc/Tgc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324496	31324496	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs2308559		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	19	195	2	ENST00000412585.2:c.312C>A	p.Asn104Lys	p.N104K	ENST00000412585	NM_005514.6	104	aaC/aaA																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	63	370	1	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	63	414	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873702	35873702	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	35	248	0	ENST00000303115.3:c.658T>C	p.Trp220Arg	p.W220R	ENST00000303115	NM_002185.3	220	Tgg/Cgg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	32	219	2	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	50	337	0	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	44	388	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948586	71948586	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	50	453	0	ENST00000298229.2:c.3302del	p.Pro1101GlnfsTer30	p.P1101Qfs*30	ENST00000298229	NM_001567.3	1100	Ccc/cc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856434	111856434	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776317487		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	60	392	2	ENST00000341259.2:c.489del	p.Thr165ProfsTer32	p.T165Pfs*32	ENST00000341259	NM_005475.2	162	gCc/gc																																																																															
ERF	2077	MSKCC	GRCh37	19	42754054	42754055	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	63	349	0	ENST00000222329.4:c.297dup	p.Lys100GlufsTer21	p.K100Efs*21	ENST00000222329	NM_006494.2	99	-/G																																																																															
ARAF	369	MSKCC	GRCh37	X	47426444	47426444	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1439786171		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	45	413	0	ENST00000377045.4:c.787G>A	p.Val263Met	p.V263M	ENST00000377045	NM_001654.4	263	Gtg/Atg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31493321	31493322	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1330233722		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	39	240	0	ENST00000344624.3:c.1834dup	p.Leu612ProfsTer8	p.L612Pfs*8	ENST00000344624		612	ctg/cCtg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467590	66467590	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746706656		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	43	268	0	ENST00000273854.3:c.679C>T	p.Arg227Cys	p.R227C	ENST00000273854	NM_004439.5	227	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578401	7578401	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	70	395	0	ENST00000269305.4:c.529C>A	p.Pro177Thr	p.P177T	ENST00000269305	NM_001126112.2	177	Ccc/Acc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139804439	139804439	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs199507094		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	51	271	0	ENST00000247668.2:c.596G>T	p.Arg199Leu	p.R199L	ENST00000247668	NM_021138.3	199	cGg/cTg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484236	57484236	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1027670523		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	48	272	0	ENST00000371085.3:c.550G>A	p.Val184Met	p.V184M	ENST00000371085	NM_000516.4	184	Gtg/Atg																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43745295	43745295	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs933893718		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	61	366	0	ENST00000523873.1:c.208G>A	p.Glu70Lys	p.E70K	ENST00000523873		70	Gag/Aag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468195	120468195	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758275919		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	74	470	0	ENST00000256646.2:c.4244C>T	p.Thr1415Met	p.T1415M	ENST00000256646	NM_024408.3	1415	aCg/aTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604776	48604776	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs377767382		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	62	305	0	ENST00000342988.3:c.1598T>G	p.Leu533Arg	p.L533R	ENST00000342988	NM_005359.5	533	cTc/cGc																																																																															
RET	5979	MSKCC	GRCh37	10	43609002	43609003	+	splice_acceptor_variant	Splice_Site	INS	-	-	G			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	61	453	0	ENST00000355710.3:c.1763dup		p.X588_splice	ENST00000355710	NM_020975.4	588																																																																																
USP8	9101	MSKCC	GRCh37	15	50733661	50733661	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	27	184	0	ENST00000307179.4:c.226del	p.Arg76AspfsTer36	p.R76Dfs*36	ENST00000307179		74	Aaa/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434174	49434174	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774358086		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	40	426	0	ENST00000301067.7:c.7379G>A	p.Arg2460His	p.R2460H	ENST00000301067	NM_003482.3	2460	cGt/cAt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683698	162683698	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs552077922		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	42	293	0	ENST00000366898.1:c.271G>A	p.Ala91Thr	p.A91T	ENST00000366898	NM_004562.2	91	Gcg/Acg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11294235	11294235	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	46	317	1	ENST00000361445.4:c.2296del	p.Arg766AspfsTer11	p.R766Dfs*11	ENST00000361445	NM_004958.3	766	Cga/ga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202780	16202780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	46	326	0	ENST00000375759.3:c.488G>A	p.Arg163Lys	p.R163K	ENST00000375759	NM_015001.2	163	aGa/aAa																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797333	45797333	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	67	465	0	ENST00000372115.3:c.1144G>T	p.Gly382Cys	p.G382C	ENST00000372115	NM_001048171.1	382	Ggt/Tgt																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612887	228612891	+	frameshift_variant	Frame_Shift_Del	DEL	ACCGT	ACCGT	-			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	75	539	0	ENST00000366696.1:c.136_140del	p.Thr46GlyfsTer13	p.T46Gfs*13	ENST00000366696	NM_003493.2	46	ACGGTg/g																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518529	69518529	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	59	316	0	ENST00000294312.3:c.116del	p.Gly39AlafsTer107	p.G39Afs*107	ENST00000294312	NM_005117.2	39	gGc/gc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94209523	94209523	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	22	182	0	ENST00000323929.3:c.591del	p.Val198Ter	p.V198*	ENST00000323929	NM_005591.3	197	aaA/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49442499	49442500	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCA			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	29	269	0	ENST00000301067.7:c.4071_4073dup	p.Asp1358dup	p.D1358dup	ENST00000301067	NM_003482.3	1358	gac/gaTGAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954223	32954223	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	51	252	2	ENST00000380152.3:c.9197A>G	p.Gln3066Arg	p.Q3066R	ENST00000380152		3066	cAg/cGg																																																																															
BLM	641	MSKCC	GRCh37	15	91295058	91295058	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	29	212	0	ENST00000355112.3:c.841C>T	p.His281Tyr	p.H281Y	ENST00000355112	NM_000057.2	281	Cat/Tat																																																																															
CTCF	10664	MSKCC	GRCh37	16	67662391	67662391	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	50	320	0	ENST00000264010.4:c.1637A>G	p.His546Arg	p.H546R	ENST00000264010	NM_006565.3	546	cAc/cGc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350895	89350896	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	31	282	0	ENST00000301030.4:c.2054_2055del	p.Lys685SerfsTer10	p.K685Sfs*10	ENST00000301030	NM_001256183.1	685	aAA/a																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16046996	16046996	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	33	188	0	ENST00000268712.3:c.1097del	p.Gly366GlufsTer37	p.G366Efs*37	ENST00000268712	NM_006311.3	366	gGa/ga																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40461423	40461423	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	63	372	0	ENST00000345506.4:c.2143G>T	p.Gly715Cys	p.G715C	ENST00000345506	NM_003152.3	715	Ggc/Tgc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440930	56440930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	47	373	0	ENST00000407977.2:c.407C>A	p.Ala136Asp	p.A136D	ENST00000407977		136	gCt/gAt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1620997	1620997	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	53	440	0	ENST00000344749.5:c.1063A>G	p.Thr355Ala	p.T355A	ENST00000344749	NM_001136139.2	355	Acc/Gcc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2193748	2193748	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	62	341	0	ENST00000398665.3:c.554T>A	p.Val185Asp	p.V185D	ENST00000398665	NM_032482.2	185	gTc/gAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098500	11098500	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371214327		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	62	391	1	ENST00000344626.4:c.1018G>A	p.Ala340Thr	p.A340T	ENST00000344626	NM_003072.3	340	Gcg/Acg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144150	11144150	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060502060		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	50	308	0	ENST00000358026.2:c.3731G>A	p.Arg1244His	p.R1244H	ENST00000358026	NM_001128849.1	1244	cGc/cAc																																																																															
CIC	23152	MSKCC	GRCh37	19	42794665	42794665	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200040001		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	53	333	1	ENST00000575354.2:c.1745C>T	p.Ala582Val	p.A582V	ENST00000575354	NM_015125.3	582	gCg/gTg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422555	47422555	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1324543011		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	45	320	0	ENST00000404338.3:c.623G>A	p.Arg208Gln	p.R208Q	ENST00000404338	NM_004491.4	208	cGg/cAg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422569	47422569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	55	306	1	ENST00000404338.3:c.637G>A	p.Ala213Thr	p.A213T	ENST00000404338	NM_004491.4	213	Gca/Aca																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288989	212288989	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	39	238	0	ENST00000342788.4:c.2757del	p.Lys919AsnfsTer15	p.K919Nfs*15	ENST00000342788	NM_005235.2	919	aaA/aa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660313	227660313	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	45	302	0	ENST00000305123.5:c.3142C>T	p.Gln1048Ter	p.Q1048*	ENST00000305123	NM_005544.2	1048	Caa/Taa																																																																															
TOP1	7150	MSKCC	GRCh37	20	39721173	39721173	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1360819731		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	52	260	0	ENST00000361337.2:c.676G>A	p.Val226Ile	p.V226I	ENST00000361337	NM_003286.2	226	Gta/Ata																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264868	46264868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	46	308	0	ENST00000371998.3:c.1738G>A	p.Val580Met	p.V580M	ENST00000371998		580	Gtg/Atg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446022	29446022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs572878226		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	46	288	0	ENST00000544604.2:c.1853G>A	p.Arg618Gln	p.R618Q	ENST00000544604	NM_001206998.1	618	cGg/cAg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1918715	1918715	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	55	247	0	ENST00000382895.3:c.878T>C	p.Leu293Ser	p.L293S	ENST00000382895	NM_133330.2	293	tTa/tCa																																																																															
SDHA	6389	MSKCC	GRCh37	5	231115	231115	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	39	128	0	ENST00000264932.6:c.895G>T	p.Gly299Cys	p.G299C	ENST00000264932	NM_004168.2	299	Ggc/Tgc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512430	149512430	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	56	375	0	ENST00000261799.4:c.1010A>C	p.Gln337Pro	p.Q337P	ENST00000261799	NM_002609.3	337	cAg/cCg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816829	32816829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	48	235	0	ENST00000354258.4:c.1495G>A	p.Val499Ile	p.V499I	ENST00000354258	NM_000593.5	499	Gta/Ata																																																																															
ROS1	6098	MSKCC	GRCh37	6	117687237	117687237	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	42	253	0	ENST00000368508.3:c.2812+2T>C		p.X938_splice	ENST00000368508	NM_002944.2	938																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139402747	139402747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs531420022		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	66	373	0	ENST00000277541.6:c.3262G>A	p.Gly1088Ser	p.G1088S	ENST00000277541	NM_017617.3	1088	Ggc/Agc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922979	44922979	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs931403834		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	46	347	1	ENST00000377967.4:c.1840G>A	p.Ala614Thr	p.A614T	ENST00000377967	NM_021140.2	614	Gca/Aca																																																																															
XIAP	331	MSKCC	GRCh37	X	123020179	123020179	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1229008261		P-0063764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	62	323	0	ENST00000355640.3:c.667C>T	p.His223Tyr	p.H223Y	ENST00000355640		223	Cac/Tac																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465390	99465390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	53	549	0	ENST00000268035.6:c.2215C>T	p.Arg739Trp	p.R739W	ENST00000268035	NM_000875.3	739	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7590694	7590694	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0063837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	234	593	1	ENST00000269305.4:c.-29+1G>A		p.X10_splice	ENST00000269305	NM_001126112.2	10																																																																																
APC	324	MSKCC	GRCh37	5	112175351	112175355	+	frameshift_variant	Frame_Shift_Del	DEL	TTTTC	TTTTC	-			P-0063837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			44	94	618	0	ENST00000257430.4:c.4062_4066del	p.Ser1355ArgfsTer18	p.S1355Rfs*18	ENST00000257430	NM_000038.5	1354	TTTTCt/t																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0064049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	66	709	10	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057520005		P-0064049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	100	504	1	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	133	436	2	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	133	204	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29664393	29664394	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAGCAAGTTTTG			P-0064049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	37	202	1	ENST00000358273.4:c.6437_6448dup	p.Lys2146_Leu2149dup	p.K2146_L2149dup	ENST00000358273	NM_001042492.2	2146	-/AAGCAAGTTTTG																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374995	45374995	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0064049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	115	222	0	ENST00000262160.6:c.848del	p.Asn283IlefsTer17	p.N283Ifs*17	ENST00000262160	NM_005901.5	283	aAt/at																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419875	41419875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	109	563	3	ENST00000373198.4:c.446C>A	p.Ala149Glu	p.A149E	ENST00000373198	NM_133170.3	149	gCa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112173623	112173627	+	frameshift_variant	Frame_Shift_Del	DEL	AATTT	AATTT	-			P-0064049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	53	252	2	ENST00000257430.4:c.2334_2338del	p.Asn778LysfsTer8	p.N778Kfs*8	ENST00000257430	NM_000038.5	778	AATTTa/a																																																																															
APC	324	MSKCC	GRCh37	5	112175774	112175775	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0064049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	40	380	1	ENST00000257430.4:c.4483_4484del	p.Ser1495TyrfsTer18	p.S1495Yfs*18	ENST00000257430	NM_000038.5	1495	AGt/t																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0064073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	143	387	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	106	246	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0064073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	23	246	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ATM	472	MSKCC	GRCh37	11	108196849	108196849	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	354	282	0	ENST00000278616.4:c.6872G>A	p.Trp2291Ter	p.W2291*	ENST00000278616	NM_000051.3	2291	tGg/tAg																																																																															
EP300	2033	MSKCC	GRCh37	22	41513784	41513785	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGGAGG			P-0064073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	206	325	0	ENST00000263253.7:c.689_695dup	p.Gln233GlyfsTer13	p.Q233Gfs*13	ENST00000263253	NM_001429.3	230	atg/aTGGGAGGtg																																																																															
APC	324	MSKCC	GRCh37	5	112173844	112173844	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0064073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	199	394	0	ENST00000257430.4:c.2555del	p.Leu852TrpfsTer9	p.L852Wfs*9	ENST00000257430	NM_000038.5	851	agT/ag																																																																															
APC	324	MSKCC	GRCh37	5	112175643	112175643	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0064140-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	171	590	0	ENST00000257430.4:c.4353del	p.Val1452TyrfsTer21	p.V1452Yfs*21	ENST00000257430	NM_000038.5	1451	gAa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0064140-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	164	317	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45873442	45873442	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0064140-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	157	460	0	ENST00000391945.4:c.54C>G	p.Tyr18Ter	p.Y18*	ENST00000391945	NM_000400.3	18	taC/taG																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754303	57754303	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064140-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	53	467	0	ENST00000274289.3:c.548G>C	p.Arg183Pro	p.R183P	ENST00000274289	NM_006622.3	183	cGa/cCa																																																																															
APC	324	MSKCC	GRCh37	5	112174159	112174159	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064140-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	117	513	0	ENST00000257430.4:c.2868C>A	p.Tyr956Ter	p.Y956*	ENST00000257430	NM_000038.5	956	taC/taA																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956675	93956675	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776802108		P-0064170-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			91	15	554	0	ENST00000369303.4:c.2561G>A	p.Arg854His	p.R854H	ENST00000369303	NM_004440.3	854	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0064170-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			71	12	714	0	ENST00000269305.4:c.97-1G>T		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064170-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	8	415	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SETD8	387893	MSKCC	GRCh37	12	123875327	123875327	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064170-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	16	455	0	ENST00000330479.4:c.283C>T	p.Arg95Ter	p.R95*	ENST00000330479	NM_020382.3	95	Cga/Tga																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436347	110436347	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064170-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	60	1058	0	ENST00000375856.3:c.2054C>G	p.Ala685Gly	p.A685G	ENST00000375856	NM_003749.2	685	gCc/gGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	50	344	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0064180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	288	660	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803183	1803183	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764712450		P-0064180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	158	530	2	ENST00000260795.2:c.535G>A	p.Ala179Thr	p.A179T	ENST00000260795		179	Gct/Act																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535430	66535430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	74	424	0	ENST00000273854.3:c.31C>T	p.Arg11Cys	p.R11C	ENST00000273854	NM_004439.5	11	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0064180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	107	495	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133916	38133916	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0064180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	354	490	0	ENST00000317025.8:c.3970T>G	p.Cys1324Gly	p.C1324G	ENST00000317025	NM_023034.1	1324	Tgt/Ggt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0064190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	64	718	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0064190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			64	18	176	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519803		P-0064190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	47	639	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0064190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	58	791	6	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411366	63411366	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	68	519	0	ENST00000330258.3:c.1801C>T	p.Arg601Ter	p.R601*	ENST00000330258	NM_152424.3	601	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175902	112175903	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs387906236		P-0064190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	28	481	0	ENST00000257430.4:c.4612_4613del	p.Glu1538IlefsTer5	p.E1538Ifs*5	ENST00000257430	NM_000038.5	1537	acAGaa/acaa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89831326	89831326	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747220449		P-0064190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	68	751	0	ENST00000389301.3:c.2750G>A	p.Arg917Gln	p.R917Q	ENST00000389301	NM_000135.2	917	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0064190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	22	318	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112173795	112173795	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0064190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	29	449	0	ENST00000257430.4:c.2504del	p.Ser835PhefsTer7	p.S835Ffs*7	ENST00000257430	NM_000038.5	835	tCt/tt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727513	88727513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374069724		P-0064249-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			739	77	531	1	ENST00000360948.2:c.266G>A	p.Arg89His	p.R89H	ENST00000360948	NM_001012338.2	89	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs878854073		P-0064249-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	129	449	0	ENST00000269305.4:c.673-1G>A		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0064249-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	47	282	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
INSR	3643	MSKCC	GRCh37	19	7142863	7142863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064249-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	190	562	0	ENST00000302850.5:c.2506G>T	p.Val836Leu	p.V836L	ENST00000302850	NM_000208.2	836	Gtg/Ttg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40710567	40710567	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064249-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	117	457	0	ENST00000373198.4:c.4284C>G	p.Ile1428Met	p.I1428M	ENST00000373198	NM_133170.3	1428	atC/atG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0064261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	41	184	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0064261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	209	466	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0064261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	63	443	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
PGR	5241	MSKCC	GRCh37	11	100999560	100999560	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778465984		P-0064261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	84	556	0	ENST00000325455.5:c.242C>T	p.Ser81Leu	p.S81L	ENST00000325455	NM_001202474.3	81	tCg/tTg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803483	32803483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs536291251		P-0064261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	144	433	0	ENST00000374899.4:c.676C>T	p.Arg226Trp	p.R226W	ENST00000374899	NM_018833.2	226	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0064261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	72	281	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933739	36933739	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1460105307		P-0064261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	73	599	0	ENST00000361632.4:c.1660C>A	p.Leu554Met	p.L554M	ENST00000361632		554	Ctg/Atg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114917829	114917829	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0064261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	108	307	0	ENST00000543371.1:c.1318+1G>T		p.X440_splice	ENST00000543371	NM_001198531.1	440																																																																																
MST1R	4486	MSKCC	GRCh37	3	49924945	49924945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	70	446	0	ENST00000296474.3:c.3998C>A	p.Thr1333Asn	p.T1333N	ENST00000296474	NM_002447.2	1333	aCc/aAc																																																																															
ALB	213	MSKCC	GRCh37	4	74279138	74279138	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs889031471		P-0064261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	32	332	0	ENST00000295897.4:c.845C>T	p.Ala282Val	p.A282V	ENST00000295897	NM_000477.5	282	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0064307-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	446	631	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880998	37880998	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs144434331		P-0064307-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	842	862	0	ENST00000269571.5:c.2327G>T	p.Gly776Val	p.G776V	ENST00000269571		776	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175568	112175569	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0064307-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	430	863	0	ENST00000257430.4:c.4277_4278insTA	p.Pro1427ThrfsTer47	p.P1427Tfs*47	ENST00000257430	NM_000038.5	1426	agc/agTAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0064415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	212	892	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
XPO1	7514	MSKCC	GRCh37	2	61724120	61724120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781425578		P-0064415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	80	579	0	ENST00000401558.2:c.782G>A	p.Arg261Gln	p.R261Q	ENST00000401558	NM_003400.3	261	cGa/cAa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670357	134670357	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369940994		P-0064415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	109	625	1	ENST00000398015.3:c.268C>T	p.Arg90Cys	p.R90C	ENST00000398015	NM_004441.4	90	Cgc/Tgc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914811	32914811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	66	602	0	ENST00000380152.3:c.6319C>T	p.Pro2107Ser	p.P2107S	ENST00000380152		2107	Cct/Tct																																																																															
APC	324	MSKCC	GRCh37	5	112173306	112173307	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0064415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	136	499	0	ENST00000257430.4:c.2016_2017del	p.His672GlnfsTer7	p.H672Qfs*7	ENST00000257430	NM_000038.5	672	cAT/c																																																																															
ALK	238	MSKCC	GRCh37	2	29446208	29446208	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs374188635		P-0064415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	61	601	0	ENST00000389048.3:c.3359G>A	p.Arg1120Gln	p.R1120Q	ENST00000389048	NM_004304.4	1120	cGg/cAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629276	187629277	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAAAGGT			P-0064415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	73	688	0	ENST00000441802.2:c.1698_1705dup	p.Phe569TyrfsTer7	p.F569Yfs*7	ENST00000441802	NM_005245.3	569	ttt/tACCTTTGTtt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0064429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	143	371	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0064429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	352	579	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0064429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	203	375	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861162	57861162	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs564027387		P-0064429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	336	453	0	ENST00000228682.2:c.959C>T	p.Thr320Met	p.T320M	ENST00000228682	NM_005269.2	320	aCg/aTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2972184	2972184	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	36	387	0	ENST00000396946.4:c.1555A>G	p.Thr519Ala	p.T519A	ENST00000396946	NM_032415.4	519	Aca/Gca																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416741	121416741	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	440	548	1	ENST00000257555.6:c.170T>C	p.Leu57Pro	p.L57P	ENST00000257555		57	cTg/cCg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15383676	15383676	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	49	507	0	ENST00000263377.2:c.235T>C	p.Phe79Leu	p.F79L	ENST00000263377	NM_058243.2	79	Ttt/Ctt																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086121	16086121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	51	546	0	ENST00000281043.3:c.1297C>A	p.Leu433Ile	p.L433I	ENST00000281043	NM_005378.4	433	Ctc/Atc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61726868	61726868	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	61	359	0	ENST00000401558.2:c.570A>T	p.Lys190Asn	p.K190N	ENST00000401558	NM_003400.3	190	aaA/aaT																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945360	54945360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	213	478	0	ENST00000312783.6:c.1066G>A	p.Ala356Thr	p.A356T	ENST00000312783	NM_198436.1	356	Gcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0064459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	32	279	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0064459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	36	548	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913237		P-0064459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	90	475	0	ENST00000369535.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000369535	NM_002524.4	12	gGt/gCt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560980	9560980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1001	65	729	0	ENST00000353224.5:c.802C>T	p.Pro268Ser	p.P268S	ENST00000353224	NM_177990.2	268	Cca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577586	7577586	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587781589		P-0064459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			714	60	557	0	ENST00000269305.4:c.695T>C	p.Ile232Thr	p.I232T	ENST00000269305	NM_001126112.2	232	aTc/aCc																																																																															
CDH1	999	MSKCC	GRCh37	16	68867360	68867360	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			807	104	650	0	ENST00000261769.5:c.2607C>G	p.Phe869Leu	p.F869L	ENST00000261769	NM_004360.3	869	ttC/ttG																																																																															
APC	324	MSKCC	GRCh37	5	112175142	112175142	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0064459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	64	560	0	ENST00000257430.4:c.3852del	p.Asp1285MetfsTer3	p.D1285Mfs*3	ENST00000257430	NM_000038.5	1284	gAa/ga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0064541-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	140	518	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0064541-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	122	404	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061566	38061566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064541-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	152	657	0	ENST00000250448.2:c.423G>A	p.Met141Ile	p.M141I	ENST00000250448	NM_004496.3	141	atG/atA																																																																															
MGA	23269	MSKCC	GRCh37	15	41961404	41961404	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0064541-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	159	528	0	ENST00000219905.7:c.312del	p.Met104IlefsTer9	p.M104Ifs*9	ENST00000219905	NM_001164273.1	104	atG/at																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162197	47162197	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0064541-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	148	588	0	ENST00000409792.3:c.3929del	p.Ser1310Ter	p.S1310*	ENST00000409792	NM_014159.6	1310	tCa/ta																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222657	53222657	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064541-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	165	611	0	ENST00000375401.3:c.4279C>T	p.Gln1427Ter	p.Q1427*	ENST00000375401	NM_004187.3	1427	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0064549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	229	652	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55151574	55151574	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0064549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	67	331	0	ENST00000257290.5:c.2360C>G	p.Ser787Ter	p.S787*	ENST00000257290	NM_006206.4	787	tCa/tGa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0064550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	238	518	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664459	138664459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	61	375	0	ENST00000330315.3:c.1106C>T	p.Ala369Val	p.A369V	ENST00000330315	NM_023067.3	369	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	142	365	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39550309	39550309	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	194	536	0	ENST00000262039.4:c.420G>T	p.Met140Ile	p.M140I	ENST00000262039	NM_002647.2	140	atG/atT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566853	212566853	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1418847829		P-0064550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	254	668	0	ENST00000342788.4:c.1328C>T	p.Thr443Ile	p.T443I	ENST00000342788	NM_005235.2	443	aCc/aTc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805586	32805586	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	286	769	0	ENST00000374899.4:c.425T>A	p.Leu142Gln	p.L142Q	ENST00000374899	NM_018833.2	142	cTg/cAg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150902479	150902479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	100	521	0	ENST00000271640.5:c.297C>A	p.Phe99Leu	p.F99L	ENST00000271640	NM_001145415.1	99	ttC/ttA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0064552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	63	370	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs764146326		P-0064552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	119	677	0	ENST00000269305.4:c.841G>T	p.Asp281Tyr	p.D281Y	ENST00000269305	NM_001126112.2	281	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	103	788	0	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390203	89390203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	79	679	0	ENST00000336596.2:c.952C>A	p.Pro318Thr	p.P318T	ENST00000336596	NM_005233.5	318	Cca/Aca																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245395	153245395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	63	481	0	ENST00000281708.4:c.1796C>A	p.Ala599Glu	p.A599E	ENST00000281708	NM_033632.3	599	gCa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112162825	112162825	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0064552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	97	406	0	ENST00000257430.4:c.1429G>T	p.Glu477Ter	p.E477*	ENST00000257430	NM_000038.5	477	Gaa/Taa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520171	176520171	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0064552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	171	790	0	ENST00000292408.4:c.1090G>T	p.Glu364Ter	p.E364*	ENST00000292408	NM_213647.1	364	Gag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81334743	81334743	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	80	528	0	ENST00000222390.5:c.1973G>T	p.Cys658Phe	p.C658F	ENST00000222390	NM_000601.4	658	tGt/tTt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931898	68931898	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	147	406	0	ENST00000288368.4:c.328C>A	p.Leu110Ile	p.L110I	ENST00000288368	NM_024870.2	110	Ctt/Att																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0064571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	234	717	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0064571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	332	755	0	ENST00000257430.4:c.4473dup	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121912580		P-0064571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	87	524	0	ENST00000342988.3:c.1157G>T	p.Gly386Val	p.G386V	ENST00000342988	NM_005359.5	386	gGt/gTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943692	9943692	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749504561		P-0064571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	243	871	0	ENST00000330684.3:c.1249G>A	p.Val417Ile	p.V417I	ENST00000330684	NM_001134407.1	417	Gtc/Atc																																																																															
TERT	7015	MSKCC	GRCh37	5	1278821	1278821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150819225		P-0064571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	263	935	2	ENST00000310581.5:c.2221G>A	p.Val741Met	p.V741M	ENST00000310581	NM_198253.2	741	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0064571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	118	429	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0064656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			806	70	608	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604789	48604789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	42	665	0	ENST00000342988.3:c.1611C>G	p.Asp537Glu	p.D537E	ENST00000342988	NM_005359.5	537	gaC/gaG																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412124	63412124	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0064656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	49	412	0	ENST00000330258.3:c.1043del	p.Gly348AlafsTer16	p.G348Afs*16	ENST00000330258	NM_152424.3	348	gGc/gc																																																																															
APC	324	MSKCC	GRCh37	5	112175643	112175643	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0064656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			773	110	751	0	ENST00000257430.4:c.4353del	p.Val1452TyrfsTer21	p.V1452Yfs*21	ENST00000257430	NM_000038.5	1451	gAa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913240		P-0064656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	39	461	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
ALK	238	MSKCC	GRCh37	2	29446230	29446230	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773583710		P-0064656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			889	58	766	0	ENST00000389048.3:c.3337C>T	p.Arg1113Trp	p.R1113W	ENST00000389048	NM_004304.4	1113	Cgg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40710650	40710650	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs724159836		P-0064656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			787	127	597	0	ENST00000373198.4:c.4201G>A	p.Gly1401Arg	p.G1401R	ENST00000373198	NM_133170.3	1401	Gga/Aga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039408	47039408	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	105	572	0	ENST00000329236.7:c.800G>T	p.Gly267Val	p.G267V	ENST00000329236	NM_001204466.1	267	gGc/gTc																																																																															
ERF	2077	MSKCC	GRCh37	19	42752639	42752639	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1178888044		P-0064657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	54	581	0	ENST00000222329.4:c.1625C>T	p.Ser542Phe	p.S542F	ENST00000222329	NM_006494.2	542	tCc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0064657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	31	310	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	422332	422332	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1428121714		P-0064657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	53	410	0	ENST00000399788.2:c.2926A>G	p.Ser976Gly	p.S976G	ENST00000399788	NM_001042603.1	976	Agc/Ggc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107737	30107737	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0064657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	81	448	0	ENST00000331968.5:c.943A>T	p.Lys315Ter	p.K315*	ENST00000331968	NM_002742.2	315	Aaa/Taa																																																																															
KIT	3815	MSKCC	GRCh37	4	55597576	55597576	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	66	373	0	ENST00000288135.5:c.2224G>T	p.Val742Leu	p.V742L	ENST00000288135	NM_000222.2	742	Gtg/Ttg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2058355	2058355	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	67	476	0	ENST00000349721.2:c.1412G>T	p.Gly471Val	p.G471V	ENST00000349721	NM_003070.3	471	gGa/gTa																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321334	1321335	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	T			P-0064657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	96	556	0	ENST00000381566.1:c.420_421delinsA	p.Asp140GlufsTer?	p.D140Efs*?	ENST00000381566		140	gaCCtg/gaAtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0064675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	45	305	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0064675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	289	716	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
FH	2271	MSKCC	GRCh37	1	241680489	241680489	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200007371		P-0064675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	59	467	0	ENST00000366560.3:c.260G>A	p.Arg87His	p.R87H	ENST00000366560	NM_000143.3	87	cGc/cAc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846354	156846354	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772229945		P-0064675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	109	778	0	ENST00000524377.1:c.1795C>T	p.Arg599Cys	p.R599C	ENST00000524377	NM_002529.3	599	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112174916	112174916	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0064675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	95	524	0	ENST00000257430.4:c.3625G>T	p.Glu1209Ter	p.E1209*	ENST00000257430	NM_000038.5	1209	Gaa/Taa																																																																															
AR	367	MSKCC	GRCh37	X	66863154	66863154	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	47	320	0	ENST00000374690.3:c.1673A>G	p.Lys558Arg	p.K558R	ENST00000374690	NM_000044.3	558	aAg/aGg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245928	5245928	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747508744		P-0064675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	65	928	0	ENST00000357368.4:c.847G>A	p.Glu283Lys	p.E283K	ENST00000357368	NM_002850.3	283	Gag/Aag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911505	134911505	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	132	750	0	ENST00000398015.3:c.1970A>T	p.Tyr657Phe	p.Y657F	ENST00000398015	NM_004441.4	657	tAc/tTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0064734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	78	267	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0064734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	219	476	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022436	12022436	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150089916		P-0064734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			764	91	701	3	ENST00000396373.4:c.542G>A	p.Arg181His	p.R181H	ENST00000396373	NM_001987.4	181	cGc/cAc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7990615	7990615	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs143526675		P-0064734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	34	241	0	ENST00000319144.4:c.146C>T	p.Ala49Val	p.A49V	ENST00000319144	NM_001139.2	49	gCg/gTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55946245	55946245	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1243160272		P-0064734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	75	489	0	ENST00000263923.4:c.3934G>A	p.Asp1312Asn	p.D1312N	ENST00000263923	NM_002253.2	1312	Gat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0064734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	127	315	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
JUN	3725	MSKCC	GRCh37	1	59247847	59247847	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	162	565	0	ENST00000371222.2:c.896A>G	p.Asn299Ser	p.N299S	ENST00000371222	NM_002228.3	299	aAc/aGc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0064737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	128	354	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0064737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	201	290	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0064737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	195	650	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589599	67589604	+	inframe_deletion	In_Frame_Del	DEL	TCAGTT	TCAGTT	-			P-0064737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	90	286	0	ENST00000274335.5:c.1365_1370del	p.Phe456_Gln457del	p.F456_Q457del	ENST00000274335		454	acTCAGTTt/act																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55130043	55130043	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774431464		P-0064737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	124	446	0	ENST00000257290.5:c.577G>A	p.Val193Ile	p.V193I	ENST00000257290	NM_006206.4	193	Gtc/Atc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114905790	114905790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	123	298	0	ENST00000543371.1:c.809C>T	p.Pro270Leu	p.P270L	ENST00000543371	NM_001198531.1	270	cCa/cTa																																																																															
B2M	567	MSKCC	GRCh37	15	45007713	45007713	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148494241		P-0064737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	86	476	0	ENST00000558401.1:c.160G>A	p.Asp54Asn	p.D54N	ENST00000558401	NM_004048.2	54	Gac/Aac																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780812	9780812	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765797019		P-0064737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	146	519	0	ENST00000377346.4:c.1534C>T	p.Arg512Trp	p.R512W	ENST00000377346	NM_005026.3	512	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108153569	108153569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	52	318	0	ENST00000278616.4:c.3709A>G	p.Ile1237Val	p.I1237V	ENST00000278616	NM_000051.3	1237	Att/Gtt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827966	40827966	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	94	474	0	ENST00000373198.4:c.2462C>A	p.Ala821Asp	p.A821D	ENST00000373198	NM_133170.3	821	gCc/gAc																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564172	139564173	+	inframe_insertion,splice_region_variant	In_Frame_Ins	INS	-	-	GGT			P-0064737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	101	403	0	ENST00000308874.7:c.313+1_313+3dup		p.G103dup	ENST00000308874		103	-/GGT																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368208	45368208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	170	349	0	ENST00000262160.6:c.1394G>A	p.Ser465Asn	p.S465N	ENST00000262160	NM_005901.5	465	aGc/aAc																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0064739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	574	430	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440379	52440379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	222	495	0	ENST00000460680.1:c.673G>A	p.Asp225Asn	p.D225N	ENST00000460680	NM_004656.3	225	Gac/Aac																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672759	86672759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	316	409	1	ENST00000274376.6:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000274376	NM_002890.2	749	cGa/cAa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434793	99434793	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201529410		P-0064739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	331	445	0	ENST00000268035.6:c.880G>A	p.Glu294Lys	p.E294K	ENST00000268035	NM_000875.3	294	Gag/Aag																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67358581	67358581	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	406	505	0	ENST00000327367.4:c.89G>A	p.Trp30Ter	p.W30*	ENST00000327367	NM_005902.3	30	tGg/tAg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217304	66217304	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs549914252		P-0064739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	160	396	0	ENST00000273854.3:c.2311C>A	p.Gln771Lys	p.Q771K	ENST00000273854	NM_004439.5	771	Cag/Aag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299916	15299916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			769	207	544	0	ENST00000263388.2:c.1262G>A	p.Arg421His	p.R421H	ENST00000263388	NM_000435.2	421	cGt/cAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348637	89348637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	388	493	0	ENST00000301030.4:c.4313C>T	p.Ser1438Phe	p.S1438F	ENST00000301030	NM_001256183.1	1438	tCc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	280	301	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482338	56482338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	348	396	0	ENST00000267101.3:c.886G>A	p.Val296Met	p.V296M	ENST00000267101	NM_001982.3	296	Gtg/Atg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794772	242794772	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0064739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	160	403	0	ENST00000334409.5:c.436+1G>A		p.X146_splice	ENST00000334409	NM_005018.2	146																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178921533	178921534	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTTGTGCACTTG			P-0064739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	119	367	0	ENST00000263967.3:c.1023_1024insCTTGTTTGTGCA	p.Ala341_Thr342insLeuValCysAla	p.A341_T342insLVCA	ENST00000263967	NM_006218.2	339	ctt/cTTTGTGCACTTGtt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553423	106553423	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	187	471	0	ENST00000369096.4:c.1388C>A	p.Pro463His	p.P463H	ENST00000369096	NM_001198.3	463	cCc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0064763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	220	570	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	371	389	0	ENST00000397062.3:c.92G>C	p.Gly31Ala	p.G31A	ENST00000397062	NM_006164.4	31	gGa/gCa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914004	32914004	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	53	473	0	ENST00000380152.3:c.5512G>C	p.Glu1838Gln	p.E1838Q	ENST00000380152		1838	Gag/Cag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0064836-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	37	567	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0064836-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	18	438	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0064836-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	37	318	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0065125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	398	550	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112170777	112170780	+	frameshift_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0065125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	66	418	0	ENST00000257430.4:c.1875_1878del	p.Asn627LeufsTer2	p.N627Lfs*2	ENST00000257430	NM_000038.5	625	CAGAca/ca																																																																															
APC	324	MSKCC	GRCh37	5	112175757	112175758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0065125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	96	435	0	ENST00000257430.4:c.4467dup	p.His1490ThrfsTer24	p.H1490Tfs*24	ENST00000257430	NM_000038.5	1489	tta/ttAa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807539	1807539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	120	552	0	ENST00000260795.2:c.1708C>T	p.Arg570Trp	p.R570W	ENST00000260795		570	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380309	25380309	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1407509439		P-0065125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	55	312	0	ENST00000256078.4:c.149C>T	p.Thr50Ile	p.T50I	ENST00000256078	NM_033360.2	50	aCc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0065140-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	476	575	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0065140-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	175	601	2	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173995	112173995	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065140-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	140	501	0	ENST00000257430.4:c.2704G>T	p.Glu902Ter	p.E902*	ENST00000257430	NM_000038.5	902	Gaa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448526	49448526	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371342351		P-0065140-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	588	613	0	ENST00000301067.7:c.185C>T	p.Pro62Leu	p.P62L	ENST00000301067	NM_003482.3	62	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0065140-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	175	394	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0065174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	198	534	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821601	72821618	+	inframe_deletion	In_Frame_Del	DEL	CCGCCGCCGCCGCCGCCA	CCGCCGCCGCCGCCGCCA	-	rs778016374		P-0065174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	37	591	0	ENST00000268489.5:c.10557_10574del	p.Gly3522_Gly3527del	p.G3522_G3527del	ENST00000268489	NM_006885.3	3519	ggTGGCGGCGGCGGCGGCGGc/ggc																																																																															
HGF	3082	MSKCC	GRCh37	7	81339499	81339499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	126	422	0	ENST00000222390.5:c.1505G>A	p.Arg502Gln	p.R502Q	ENST00000222390	NM_000601.4	502	cGa/cAa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81819721	81819721	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370352962		P-0065174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	162	566	1	ENST00000359376.3:c.127G>A	p.Val43Ile	p.V43I	ENST00000359376	NM_002661.3	43	Gtc/Atc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749278	43749278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	83	519	0	ENST00000382044.4:c.1528G>T	p.Gly510Trp	p.G510W	ENST00000382044	NM_001141980.1	510	Ggg/Tgg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165755	47165755	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	50	567	0	ENST00000409792.3:c.371del	p.Leu124TyrfsTer28	p.L124Yfs*28	ENST00000409792	NM_014159.6	124	tTa/ta																																																																															
APC	324	MSKCC	GRCh37	5	112175393	112175394	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CACC			P-0065174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	284	581	0	ENST00000257430.4:c.4105_4108dup	p.Lys1370ThrfsTer6	p.K1370Tfs*6	ENST00000257430	NM_000038.5	1368	aca/aCACCca																																																																															
APC	324	MSKCC	GRCh37	5	112175400	112175400	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1365778107		P-0065174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	296	563	0	ENST00000257430.4:c.4109A>G	p.Lys1370Arg	p.K1370R	ENST00000257430	NM_000038.5	1370	aAa/aGa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575096	48575096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	206	463	0	ENST00000342988.3:c.290G>A	p.Arg97His	p.R97H	ENST00000342988	NM_005359.5	97	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175588	112175588	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	235	667	0	ENST00000257430.4:c.4298del	p.Pro1433GlnfsTer40	p.P1433Qfs*40	ENST00000257430	NM_000038.5	1433	Cca/ca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432498	49432498	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763549369		P-0065178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	214	625	1	ENST00000301067.7:c.8641C>T	p.Arg2881Trp	p.R2881W	ENST00000301067	NM_003482.3	2881	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0065178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	129	374	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218140	36218140	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	64	541	0	ENST00000222270.7:c.4087T>C	p.Trp1363Arg	p.W1363R	ENST00000222270	NM_014727.1	1363	Tgg/Cgg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212589863	212589863	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	83	584	0	ENST00000342788.4:c.679A>T	p.Ser227Cys	p.S227C	ENST00000342788	NM_005235.2	227	Agt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153253754	153253754	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	164	413	1	ENST00000281708.4:c.979G>T	p.Glu327Ter	p.E327*	ENST00000281708	NM_033632.3	327	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174562	112174562	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	220	553	0	ENST00000257430.4:c.3272del	p.Pro1091HisfsTer35	p.P1091Hfs*35	ENST00000257430	NM_000038.5	1091	Cca/ca																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271372	26271372	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs141552598		P-0065178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	216	750	0	ENST00000305910.3:c.241A>G	p.Thr81Ala	p.T81A	ENST00000305910	NM_003534.2	81	Aca/Gca																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741777	145741778	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0065178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	38	697	0	ENST00000428558.2:c.725dup	p.Gln243ProfsTer53	p.Q243Pfs*53	ENST00000428558	NM_004260.3	242	ttc/ttTc																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0065185-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	34	590	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0065185-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	180	536	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579559	7579559	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065185-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	178	638	4	ENST00000269305.4:c.128del	p.Leu43Ter	p.L43*	ENST00000269305	NM_001126112.2	43	tTg/tg																																																																															
APC	324	MSKCC	GRCh37	5	112116538	112116538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs749479682		P-0065185-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	80	421	2	ENST00000257430.4:c.583C>T	p.Gln195Ter	p.Q195*	ENST00000257430	NM_000038.5	195	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0065185-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	203	358	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437918	110437919	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCGGCGGGCGCG			P-0065185-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	19	247	0	ENST00000375856.3:c.471_482dup	p.Ala158_Ala161dup	p.A158_A161dup	ENST00000375856	NM_003749.2	158	gcg/gcCGCGCCCGCCGCg																																																																															
XIAP	331	MSKCC	GRCh37	X	123019514	123019514	+	start_lost	Translation_Start_Site	SNP	T	T	G			P-0065185-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	95	353	2	ENST00000355640.3:c.2T>G	p.Met1?	p.M1?	ENST00000355640		1	aTg/aGg																																																																															
MGA	23269	MSKCC	GRCh37	15	42041052	42041053	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	A			P-0065185-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			711	97	682	0	ENST00000219905.7:c.5430_5431delinsA	p.Leu1811PhefsTer27	p.L1811Ffs*27	ENST00000219905	NM_001164273.1	1810	caGCtt/caAtt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0065196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	210	589	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	196	456	0	ENST00000269305.4:c.712T>A	p.Cys238Ser	p.C238S	ENST00000269305	NM_001126112.2	238	Tgt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112174117	112174117	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	129	441	0	ENST00000257430.4:c.2827del	p.Ser943GlnfsTer12	p.S943Qfs*12	ENST00000257430	NM_000038.5	942	aaT/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0065196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	137	326	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0065199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	47	386	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0065199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	73	516	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0065199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	79	491	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473647	67473647	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs886039137		P-0065199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	167	482	0	ENST00000327367.4:c.727C>T	p.Arg243Cys	p.R243C	ENST00000327367	NM_005902.3	243	Cgc/Tgc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374935	45374935	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	161	448	0	ENST00000262160.6:c.908C>G	p.Thr303Arg	p.T303R	ENST00000262160	NM_005901.5	303	aCa/aGa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500882	8500882	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs191877533		P-0065199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	86	499	0	ENST00000356435.5:c.2000C>T	p.Ser667Leu	p.S667L	ENST00000356435		667	tCg/tTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717749	89717749	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	99	345	0	ENST00000371953.3:c.775del	p.His259ThrfsTer7	p.H259Tfs*7	ENST00000371953	NM_000314.4	258	ttC/tt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248443	212248443	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141902440		P-0065199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	156	604	0	ENST00000342788.4:c.3824G>A	p.Arg1275Gln	p.R1275Q	ENST00000342788	NM_005235.2	1275	cGg/cAg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81574747	81574747	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	72	490	0	ENST00000298171.2:c.643G>T	p.Val215Phe	p.V215F	ENST00000298171	NM_000369.2	215	Gtt/Ttt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786669	3786669	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	86	501	0	ENST00000262367.5:c.4542del	p.Ile1515SerfsTer35	p.I1515Sfs*35	ENST00000262367	NM_004380.2	1514	cgG/cg																																																																															
APC	324	MSKCC	GRCh37	5	112173723	112173723	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	50	493	0	ENST00000257430.4:c.2432C>A	p.Ser811Ter	p.S811*	ENST00000257430	NM_000038.5	811	tCa/tAa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864487	162864487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	55	454	0	ENST00000366898.1:c.26C>A	p.Ser9Tyr	p.S9Y	ENST00000366898	NM_004562.2	9	tCc/tAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735466	40735466	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182388300		P-0065206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			733	106	557	0	ENST00000373198.4:c.3407G>A	p.Arg1136His	p.R1136H	ENST00000373198	NM_133170.3	1136	cGt/cAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42796744	42796744	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370377701		P-0065206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	103	733	0	ENST00000575354.2:c.3202G>A	p.Gly1068Ser	p.G1068S	ENST00000575354	NM_015125.3	1068	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0065206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	257	564	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913250		P-0065206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	131	443	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																															
ALK	238	MSKCC	GRCh37	2	29455173	29455173	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746442213		P-0065206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	85	559	1	ENST00000389048.3:c.2629G>A	p.Ala877Thr	p.A877T	ENST00000389048	NM_004304.4	877	Gca/Aca																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665096	138665096	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs758370933		P-0065206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	73	477	0	ENST00000330315.3:c.469C>G	p.Pro157Ala	p.P157A	ENST00000330315	NM_023067.3	157	Ccc/Gcc																																																																															
MYC	4609	MSKCC	GRCh37	8	128750638	128750638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			724	112	613	0	ENST00000377970.2:c.175G>A	p.Ala59Thr	p.A59T	ENST00000377970	NM_002467.4	59	Gcg/Acg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373156	118373157	+	missense_variant	Missense_Mutation	DNP	TC	TC	AT			P-0065206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	51	463	0	ENST00000534358.1:c.6549_6550delinsAT	p.Asp2183_Pro2184delinsGluSer	p.D2183_P2184delinsES	ENST00000534358	NM_005933.3	2183	gaTCct/gaATct																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326235	62326235	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs142457144		P-0065206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			813	97	577	0	ENST00000482936.1:c.3251C>T	p.Thr1084Ile	p.T1084I	ENST00000482936		1084	aCa/aTa																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149375041	149375041	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	298	641	0	ENST00000360632.3:c.53T>C	p.Ile18Thr	p.I18T	ENST00000360632	NM_015472.4	18	aTc/aCc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2115855	2115855	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	171	491	0	ENST00000349721.2:c.3490G>A	p.Gly1164Arg	p.G1164R	ENST00000349721	NM_003070.3	1164	Ggg/Agg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48586250	48586250	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	37	358	0	ENST00000342988.3:c.919G>T	p.Glu307Ter	p.E307*	ENST00000342988	NM_005359.5	307	Gag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	21	398	0	ENST00000342988.3:c.1255G>T	p.Gly419Trp	p.G419W	ENST00000342988	NM_005359.5	419	Ggg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112173956	112173956	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	456	443	0	ENST00000257430.4:c.2667del	p.Val890SerfsTer26	p.V890Sfs*26	ENST00000257430	NM_000038.5	889	Aaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0065213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	197	614	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
TP53	7157	MSKCC	GRCh37	17	7576905	7576914	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCTGGTGT	GAGCTGGTGT	-			P-0065213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	163	611	0	ENST00000269305.4:c.932_941del	p.Asn311ThrfsTer31	p.N311Tfs*31	ENST00000269305	NM_001126112.2	311	aACACCAGCTCc/ac																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554066	63554067	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATAGCCACACACGAT			P-0065213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			729	186	579	0	ENST00000307078.5:c.672_673insATCGTGTGTGGCTAT	p.Tyr224_Leu225insIleValCysGlyTyr	p.Y224_L225insIVCGY	ENST00000307078	NM_004655.3	224	-/ATCGTGTGTGGCTAT																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581148	48581149	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	AGCTCCATCAAGTATGATGGTGAAGGATGAATATGTGCATG			P-0065213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	12	324	0	ENST00000342988.3:c.455-1_494dup		p.X152_splice	ENST00000342988	NM_005359.5	152																																																																																
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0065280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	91	313	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519986		P-0065280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	287	599	0	ENST00000269305.4:c.809T>G	p.Phe270Cys	p.F270C	ENST00000269305	NM_001126112.2	270	tTt/tGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	28	411	0	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
BCL10	8915	MSKCC	GRCh37	1	85736510	85736511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs387906351		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	103	337	2	ENST00000370580.1:c.136dup	p.Ile46AsnfsTer4	p.I46Nfs*4	ENST00000370580	NM_003921.4	46	ata/aAta																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612974	228612974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756810829		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	150	582	1	ENST00000366696.1:c.53G>A	p.Arg18His	p.R18H	ENST00000366696	NM_003493.2	18	cGc/cAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100727	8100728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs771019738		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	72	443	1	ENST00000346208.3:c.708dup	p.Ser237GlnfsTer66	p.S237Qfs*66	ENST00000346208		234	ttc/ttCc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692981	89692982	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	71	303	0	ENST00000371953.3:c.469dup	p.Glu157GlyfsTer23	p.E157Gfs*23	ENST00000371953	NM_000314.4	155	-/G																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	154	315	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
CTR9	9646	MSKCC	GRCh37	11	10794117	10794117	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs949336975		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	147	372	2	ENST00000361367.2:c.2495G>A	p.Arg832His	p.R832H	ENST00000361367	NM_014633.3	832	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108168092	108168092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	63	289	0	ENST00000278616.4:c.4988G>A	p.Gly1663Asp	p.G1663D	ENST00000278616	NM_000051.3	1663	gGt/gAt																																																																															
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	97	242	0	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478928	56478928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	107	381	0	ENST00000267101.3:c.384C>A	p.Ser128Arg	p.S128R	ENST00000267101	NM_001982.3	128	agC/agA																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914613	32914613	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	95	386	0	ENST00000380152.3:c.6121T>A	p.Ser2041Thr	p.S2041T	ENST00000380152		2041	Tcc/Acc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396233	396234	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769619638		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	118	411	0	ENST00000262320.3:c.792dup	p.Gly265ArgfsTer20	p.G265Rfs*20	ENST00000262320	NM_003502.3	264	-/C																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396998	396999	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	102	372	0	ENST00000262320.3:c.27dup	p.Asp11GlyfsTer18	p.D11Gfs*18	ENST00000262320	NM_003502.3	9	-/C																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779646	3779646	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	102	486	0	ENST00000262367.5:c.5402T>C	p.Val1801Ala	p.V1801A	ENST00000262367	NM_004380.2	1801	gTg/gCg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641386	23641386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	105	417	0	ENST00000261584.4:c.2089G>A	p.Gly697Ser	p.G697S	ENST00000261584	NM_024675.3	697	Ggc/Agc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991586	72991586	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768340392		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	122	419	0	ENST00000268489.5:c.2459G>A	p.Arg820His	p.R820H	ENST00000268489	NM_006885.3	820	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993013	72993014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	116	480	0	ENST00000268489.5:c.1031dup	p.Asn344LysfsTer13	p.N344Kfs*13	ENST00000268489	NM_006885.3	344	aac/aaAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29556292	29556292	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1251621684		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	91	387	0	ENST00000358273.4:c.2659G>A	p.Ala887Thr	p.A887T	ENST00000358273	NM_001042492.2	887	Gca/Aca																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37884217	37884218	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768092215		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	102	410	1	ENST00000269571.5:c.3694dup	p.Ala1232GlyfsTer45	p.A1232Gfs*45	ENST00000269571		1230	cgg/cGgg																																																																															
RARA	5914	MSKCC	GRCh37	17	38512401	38512402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs745553450		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	71	329	1	ENST00000254066.5:c.1319dup	p.Pro441AlafsTer5	p.P441Afs*5	ENST00000254066	NM_000964.3	438	gcc/gCcc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244044	41244045	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs397509077		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	114	407	0	ENST00000357654.3:c.3503dup	p.Asn1168LysfsTer2	p.N1168Kfs*2	ENST00000357654	NM_007294.3	1168	aat/aaAt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58734176	58734177	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	94	345	0	ENST00000305921.3:c.1238dup	p.Cys414MetfsTer20	p.C414Mfs*20	ENST00000305921	NM_003620.3	412	tcc/tCcc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533938	63533939	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	198	413	0	ENST00000307078.5:c.1214_1215dup	p.Gly406ArgfsTer53	p.G406Rfs*53	ENST00000307078	NM_004655.3	405	-/AG																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245995	5245996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	93	469	0	ENST00000357368.4:c.779dup	p.Asn261GlnfsTer30	p.N261Qfs*30	ENST00000357368	NM_002850.3	260	ggc/ggGc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134252	11134252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	97	313	0	ENST00000344626.4:c.2918G>A	p.Arg973Gln	p.R973Q	ENST00000344626	NM_003072.3	973	cGg/cAg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272237	15272238	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	86	428	1	ENST00000263388.2:c.6201dup	p.Gly2068ArgfsTer27	p.G2068Rfs*27	ENST00000263388	NM_000435.2	2067	-/C																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350626	15350626	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1234699192		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	99	393	0	ENST00000263377.2:c.3289C>T	p.Arg1097Cys	p.R1097C	ENST00000263377	NM_058243.2	1097	Cgt/Tgt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210932	36210932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	109	532	0	ENST00000222270.7:c.683C>T	p.Ala228Val	p.A228V	ENST00000222270	NM_014727.1	228	gCa/gTa																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422660	47422660	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	31	363	0	ENST00000404338.3:c.728T>C	p.Leu243Ser	p.L243S	ENST00000404338	NM_004491.4	243	tTa/tCa																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424759	47424760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	142	432	1	ENST00000404338.3:c.2834dup	p.Asn946GlufsTer11	p.N946Efs*11	ENST00000404338	NM_004491.4	943	gaa/gAaa																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605215	46605215	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1407435090		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	81	350	0	ENST00000263734.3:c.1432A>T	p.Ser478Cys	p.S478C	ENST00000263734	NM_001430.4	478	Agc/Tgc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	80	420	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225378265	225378266	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	80	267	0	ENST00000264414.4:c.629dup	p.Leu210PhefsTer20	p.L210Ffs*20	ENST00000264414	NM_003590.4	210	ttg/ttTg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225422542	225422542	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	74	231	0	ENST00000264414.4:c.98T>C	p.Ile33Thr	p.I33T	ENST00000264414	NM_003590.4	33	aTt/aCt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661663	227661664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761880048		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	98	459	1	ENST00000305123.5:c.1791dup	p.His598AlafsTer13	p.H598Afs*13	ENST00000305123	NM_005544.2	597	-/G																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	79	429	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22221709	22221717	+	inframe_deletion	In_Frame_Del	DEL	CCGCCGCCG	CCGCCGCCG	-	rs1265582753		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	52	268	0	ENST00000215832.6:c.14_22del	p.Ala5_Ala7del	p.A5_A7del	ENST00000215832	NM_002745.4	5	gCGGCGGCGGgc/ggc																																																																															
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	88	311	2	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																															
MITF	4286	MSKCC	GRCh37	3	69998250	69998250	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	46	343	0	ENST00000352241.4:c.815del	p.Pro272HisfsTer17	p.P272Hfs*17	ENST00000352241	NM_198159.2	271	Ccc/cc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851793	134851793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	115	494	0	ENST00000398015.3:c.1199C>T	p.Thr400Ile	p.T400I	ENST00000398015	NM_004441.4	400	aCc/aTc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665096	138665096	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs758370933		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	75	340	0	ENST00000330315.3:c.469C>G	p.Pro157Ala	p.P157A	ENST00000330315	NM_023067.3	157	Ccc/Gcc																																																																															
GAB1	2549	MSKCC	GRCh37	4	144359669	144359671	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	119	370	0	ENST00000262994.4:c.1114_1116del	p.Ser372del	p.S372del	ENST00000262994	NM_002039.3	371	AGT/-																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945616	38945619	+	frameshift_variant	Frame_Shift_Del	DEL	AGTT	AGTT	-	rs1390116297		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	68	319	0	ENST00000357387.3:c.4607_4610del	p.Gln1536ArgfsTer27	p.Q1536Rfs*27	ENST00000357387	NM_152756.3	1536	cAACTg/cg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	137	291	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176722311	176722311	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs747099587		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	118	452	0	ENST00000439151.2:c.7942T>A	p.Ser2648Thr	p.S2648T	ENST00000439151	NM_022455.4	2648	Tct/Act																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032108	26032108	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	152	535	0	ENST00000244661.2:c.181T>A	p.Leu61Met	p.L61M	ENST00000244661	NM_003537.3	61	Ttg/Atg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6031624	6031624	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	94	145	0	ENST00000265849.7:c.968T>G	p.Leu323Arg	p.L323R	ENST00000265849	NM_000535.5	323	cTt/cGt																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	83	364	0	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151846173	151846173	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	145	406	0	ENST00000262189.6:c.12839A>G	p.Tyr4280Cys	p.Y4280C	ENST00000262189	NM_170606.2	4280	tAc/tGc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	88	389	0	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145743006	145743006	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	68	411	0	ENST00000428558.2:c.98C>A	p.Ala33Glu	p.A33E	ENST00000428558	NM_004260.3	33	gCg/gAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404588	8404588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	75	280	0	ENST00000356435.5:c.4159G>A	p.Ala1387Thr	p.A1387T	ENST00000356435		1387	Gcg/Acg																																																																															
ATRX	546	MSKCC	GRCh37	X	76890149	76890150	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	75	293	0	ENST00000373344.5:c.4744dup	p.Thr1582AsnfsTer19	p.T1582Nfs*19	ENST00000373344	NM_000489.3	1582	aca/aAca																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0065384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	28	248	1	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339110	65339110	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs747560156		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	144	444	0	ENST00000342505.4:c.426G>T	p.Lys142Asn	p.K142N	ENST00000342505	NM_002227.2	142	aaG/aaT																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400905	72400905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	118	388	1	ENST00000357731.5:c.266C>A	p.Pro89His	p.P89H	ENST00000357731	NM_173808.2	89	cCt/cAt																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165520	118165520	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	154	459	0	ENST00000369448.3:c.30T>A	p.Asp10Glu	p.D10E	ENST00000369448	NM_017709.3	10	gaT/gaA																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150919401	150919401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1377752861		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	126	416	0	ENST00000271640.5:c.1180C>T	p.Arg394Trp	p.R394W	ENST00000271640	NM_001145415.1	394	Cgg/Tgg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175956150	175956150	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374830292		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	72	311	0	ENST00000367669.3:c.2062G>A	p.Asp688Asn	p.D688N	ENST00000367669	NM_022457.5	688	Gac/Aac																																																																															
FH	2271	MSKCC	GRCh37	1	241676991	241676991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	68	314	0	ENST00000366560.3:c.290G>A	p.Gly97Asp	p.G97D	ENST00000366560	NM_000143.3	97	gGc/gAc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716138	243716138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	65	321	0	ENST00000263826.5:c.1056G>T	p.Glu352Asp	p.E352D	ENST00000263826	NM_005465.4	352	gaG/gaT																																																																															
TET1	80312	MSKCC	GRCh37	10	70333442	70333442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	115	458	0	ENST00000373644.4:c.1347G>T	p.Trp449Cys	p.W449C	ENST00000373644	NM_030625.2	449	tgG/tgT																																																																															
TET1	80312	MSKCC	GRCh37	10	70426835	70426835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	109	379	0	ENST00000373644.4:c.4495C>A	p.Leu1499Ile	p.L1499I	ENST00000373644	NM_030625.2	1499	Ctt/Att																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685310	89685310	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	64	239	0	ENST00000371953.3:c.205A>C	p.Asn69His	p.N69H	ENST00000371953	NM_000314.4	69	Aat/Cat																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724261	112724261	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	116	431	0	ENST00000369452.4:c.145G>T	p.Asp49Tyr	p.D49Y	ENST00000369452	NM_007373.3	49	Gat/Tat																																																																															
CTR9	9646	MSKCC	GRCh37	11	10794758	10794758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	96	354	0	ENST00000361367.2:c.2665C>A	p.Leu889Ile	p.L889I	ENST00000361367	NM_014633.3	889	Ctt/Att																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64132779	64132779	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776640922		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	129	514	0	ENST00000334205.4:c.913G>A	p.Asp305Asn	p.D305N	ENST00000334205	NM_003942.2	305	Gat/Aat																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94209538	94209538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	63	274	0	ENST00000323929.3:c.576G>A	p.Met192Ile	p.M192I	ENST00000323929	NM_005591.3	192	atG/atA																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94219165	94219165	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782472		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	86	379	0	ENST00000323929.3:c.239G>T	p.Arg80Ile	p.R80I	ENST00000323929	NM_005591.3	80	aGa/aTa																																																																															
ATM	472	MSKCC	GRCh37	11	108159816	108159816	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			38	13	97	0	ENST00000278616.4:c.4222C>A	p.Leu1408Ile	p.L1408I	ENST00000278616	NM_000051.3	1408	Ctt/Att																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374253	118374253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	48	537	0	ENST00000534358.1:c.7646C>T	p.Ser2549Phe	p.S2549F	ENST00000534358	NM_005933.3	2549	tCc/tTc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	404855	404855	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	129	370	0	ENST00000399788.2:c.4339G>T	p.Glu1447Ter	p.E1447*	ENST00000399788	NM_001042603.1	1447	Gaa/Taa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435481	18435481	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	119	372	0	ENST00000266497.5:c.466C>A	p.Leu156Ile	p.L156I	ENST00000266497		156	Cta/Ata																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18491384	18491384	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	69	306	0	ENST00000266497.5:c.1297G>T	p.Glu433Ter	p.E433*	ENST00000266497		433	Gaa/Taa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21636366	21636366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs561515655		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	78	363	2	ENST00000421138.2:c.644G>A	p.Arg215Gln	p.R215Q	ENST00000421138		215	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	96	304	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425854	49425854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760279999		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	104	528	0	ENST00000301067.7:c.12634C>T	p.Arg4212Trp	p.R4212W	ENST00000301067	NM_003482.3	4212	Cgg/Tgg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864433	57864433	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs538595523		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	113	566	0	ENST00000228682.2:c.1910G>A	p.Arg637Gln	p.R637Q	ENST00000228682	NM_005269.2	637	cGg/cAg																																																																															
POLE	5426	MSKCC	GRCh37	12	133212572	133212572	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	98	417	0	ENST00000320574.5:c.5717C>A	p.Ser1906Tyr	p.S1906Y	ENST00000320574	NM_006231.2	1906	tCt/tAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133248859	133248859	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149296223		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	138	473	0	ENST00000320574.5:c.1736G>A	p.Arg579His	p.R579H	ENST00000320574	NM_006231.2	579	cGc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133249842	133249842	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	224	415	0	ENST00000320574.5:c.1381T>C	p.Ser461Pro	p.S461P	ENST00000320574	NM_006231.2	461	Tca/Cca																																																																															
LATS2	26524	MSKCC	GRCh37	13	21555686	21555686	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1194403560		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	130	492	0	ENST00000382592.4:c.2584C>T	p.Arg862Trp	p.R862W	ENST00000382592	NM_014572.2	862	Cgg/Tgg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608510	28608510	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	88	432	0	ENST00000241453.7:c.1632C>A	p.Phe544Leu	p.F544L	ENST00000241453	NM_004119.2	544	ttC/ttA																																																																															
FLT1	2321	MSKCC	GRCh37	13	28893637	28893637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	112	333	0	ENST00000282397.4:c.3209C>A	p.Ser1070Tyr	p.S1070Y	ENST00000282397	NM_002019.4	1070	tCt/tAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913531	32913531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	72	446	0	ENST00000380152.3:c.5039C>A	p.Ser1680Tyr	p.S1680Y	ENST00000380152		1680	tCt/tAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913852	32913852	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	60	417	0	ENST00000380152.3:c.5360T>G	p.Phe1787Cys	p.F1787C	ENST00000380152		1787	tTt/tGt																																																																															
RB1	5925	MSKCC	GRCh37	13	48923137	48923137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	50	225	0	ENST00000267163.4:c.585G>T	p.Trp195Cys	p.W195C	ENST00000267163	NM_000321.2	195	tgG/tgT																																																																															
RB1	5925	MSKCC	GRCh37	13	48934182	48934182	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1267000381		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	62	296	0	ENST00000267163.4:c.637G>A	p.Val213Met	p.V213M	ENST00000267163	NM_000321.2	213	Gtg/Atg																																																																															
RB1	5925	MSKCC	GRCh37	13	48955517	48955517	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	57	312	0	ENST00000267163.4:c.1633G>T	p.Glu545Ter	p.E545*	ENST00000267163	NM_000321.2	545	Gaa/Taa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81606090	81606090	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	151	463	0	ENST00000298171.2:c.760G>T	p.Ala254Ser	p.A254S	ENST00000298171	NM_000369.2	254	Gca/Tca																																																																															
DICER1	23405	MSKCC	GRCh37	14	95592973	95592973	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	55	292	0	ENST00000343455.3:c.847G>T	p.Asp283Tyr	p.D283Y	ENST00000343455	NM_177438.2	283	Gat/Tat																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	108	431	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38631949	38631949	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	64	348	0	ENST00000299084.4:c.435G>T	p.Glu145Asp	p.E145D	ENST00000299084	NM_152594.2	145	gaG/gaT																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43708548	43708548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	150	506	0	ENST00000382044.4:c.4748G>T	p.Arg1583Ile	p.R1583I	ENST00000382044	NM_001141980.1	1583	aGa/aTa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43784496	43784496	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	101	425	0	ENST00000382044.4:c.178G>T	p.Glu60Ter	p.E60*	ENST00000382044	NM_001141980.1	60	Gaa/Taa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799249	88799249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	123	431	0	ENST00000360948.2:c.136C>T	p.Arg46Trp	p.R46W	ENST00000360948	NM_001012338.2	46	Cgg/Tgg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916206	9916206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	112	384	0	ENST00000330684.3:c.2083C>T	p.Arg695Trp	p.R695W	ENST00000330684	NM_001134407.1	695	Cgg/Tgg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032064	10032064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	101	463	0	ENST00000330684.3:c.759C>A	p.Phe253Leu	p.F253L	ENST00000330684	NM_001134407.1	253	ttC/ttA																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81965122	81965122	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	139	430	0	ENST00000359376.3:c.2602A>C	p.Asn868His	p.N868H	ENST00000359376	NM_002661.3	868	Aac/Cac																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544565	86544565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	125	587	0	ENST00000262426.4:c.390C>A	p.Phe130Leu	p.F130L	ENST00000262426	NM_001451.2	130	ttC/ttA																																																																															
NF1	4763	MSKCC	GRCh37	17	29592269	29592269	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	13	289	0	ENST00000358273.4:c.4747G>T	p.Glu1583Ter	p.E1583*	ENST00000358273	NM_001042492.2	1583	Gaa/Taa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740436	58740436	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs769061997		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	128	384	0	ENST00000305921.3:c.1341G>T	p.Glu447Asp	p.E447D	ENST00000305921	NM_003620.3	447	gaG/gaT																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59885920	59885920	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	112	391	0	ENST00000259008.2:c.826C>A	p.Leu276Ile	p.L276I	ENST00000259008	NM_032043.2	276	Ctt/Att																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59926543	59926543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	49	346	0	ENST00000259008.2:c.454G>T	p.Asp152Tyr	p.D152Y	ENST00000259008	NM_032043.2	152	Gat/Tat																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39647380	39647380	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1306170227		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	106	385	0	ENST00000262039.4:c.2552C>T	p.Ser851Leu	p.S851L	ENST00000262039	NM_002647.2	851	tCg/tTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604668	48604668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	35	429	0	ENST00000342988.3:c.1490G>A	p.Arg497His	p.R497H	ENST00000342988	NM_005359.5	497	cGc/cAc																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61322903	61322903	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	52	247	0	ENST00000283752.5:c.1161C>A	p.Phe387Leu	p.F387L	ENST00000283752	NM_006919.2	387	ttC/ttA																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4102411	4102411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs751317148		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	139	450	0	ENST00000262948.5:c.491G>T	p.Arg164Met	p.R164M	ENST00000262948	NM_030662.3	164	aGg/aTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10259683	10259683	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	63	292	0	ENST00000340748.4:c.2549A>G	p.Asp850Gly	p.D850G	ENST00000340748		850	gAt/gGt																																																																															
CD79A	973	MSKCC	GRCh37	19	42383356	42383356	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782043875		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	127	454	0	ENST00000221972.3:c.376C>T	p.Arg126Cys	p.R126C	ENST00000221972	NM_021601.3	126	Cgc/Tgc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52723453	52723453	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	112	334	0	ENST00000322088.6:c.1314C>A	p.Phe438Leu	p.F438L	ENST00000322088	NM_014225.5	438	ttC/ttA																																																																															
ALK	238	MSKCC	GRCh37	2	30142991	30142991	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62129830		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	139	611	0	ENST00000389048.3:c.535C>T	p.Arg179Cys	p.R179C	ENST00000389048	NM_004304.4	179	Cgc/Tgc																																																																															
ALK	238	MSKCC	GRCh37	2	30143196	30143196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	117	521	0	ENST00000389048.3:c.330G>T	p.Trp110Cys	p.W110C	ENST00000389048	NM_004304.4	110	tgG/tgT																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027958	48027958	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	119	438	0	ENST00000234420.5:c.2836G>T	p.Glu946Ter	p.E946*	ENST00000234420	NM_000179.2	946	Gaa/Taa																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631339	67631339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	17	372	0	ENST00000272342.5:c.1525G>T	p.Asp509Tyr	p.D509Y	ENST00000272342	NM_019002.3	509	Gat/Tat																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631576	67631576	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	73	487	0	ENST00000272342.5:c.1762G>T	p.Glu588Ter	p.E588*	ENST00000272342	NM_019002.3	588	Gaa/Taa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248427	212248427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	67	492	0	ENST00000342788.4:c.3840G>T	p.Glu1280Asp	p.E1280D	ENST00000342788	NM_005235.2	1280	gaG/gaT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426627	212426627	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	83	420	0	ENST00000342788.4:c.2487+1G>A		p.X829_splice	ENST00000342788	NM_005235.2	829																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212488657	212488657	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374970657		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	39	431	0	ENST00000342788.4:c.2192C>T	p.Thr731Met	p.T731M	ENST00000342788	NM_005235.2	731	aCg/aTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812293	212812293	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs569995088		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	77	426	0	ENST00000342788.4:c.283C>T	p.Arg95Cys	p.R95C	ENST00000342788	NM_005235.2	95	Cgt/Tgt																																																																															
BARD1	580	MSKCC	GRCh37	2	215645660	215645660	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs202118376		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	85	458	0	ENST00000260947.4:c.938C>A	p.Ser313Tyr	p.S313Y	ENST00000260947	NM_000465.2	313	tCt/tAt																																																																															
BARD1	580	MSKCC	GRCh37	2	215646149	215646149	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730881412		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	81	383	0	ENST00000260947.4:c.449G>A	p.Arg150Gln	p.R150Q	ENST00000260947	NM_000465.2	150	cGa/cAa																																																																															
INHA	3623	MSKCC	GRCh37	2	220437278	220437278	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	85	502	0	ENST00000243786.2:c.182G>T	p.Arg61Ile	p.R61I	ENST00000243786	NM_002191.3	61	aGa/aTa																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376146	225376146	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	45	335	0	ENST00000264414.4:c.808T>C	p.Ser270Pro	p.S270P	ENST00000264414	NM_003590.4	270	Tcc/Ccc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40911144	40911144	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776134993		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	53	250	0	ENST00000373198.4:c.2161C>T	p.Arg721Cys	p.R721C	ENST00000373198	NM_133170.3	721	Cgt/Tgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419913	41419913	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	133	519	0	ENST00000373198.4:c.408G>A	p.Trp136Ter	p.W136*	ENST00000373198	NM_133170.3	136	tgG/tgA																																																																															
ERG	2078	MSKCC	GRCh37	21	39764365	39764365	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	99	334	0	ENST00000288319.7:c.747T>A	p.Asp249Glu	p.D249E	ENST00000288319	NM_182918.3	249	gaT/gaA																																																																															
ERG	2078	MSKCC	GRCh37	21	39775467	39775467	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1048054600		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	138	512	0	ENST00000288319.7:c.553G>A	p.Ala185Thr	p.A185T	ENST00000288319	NM_182918.3	185	Gcc/Acc																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182637	38182637	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs748659894		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	57	405	0	ENST00000396334.3:c.790C>T	p.Arg264Ter	p.R264*	ENST00000396334	NM_002468.4	264	Cga/Tga																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266847	41266847	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	128	482	0	ENST00000349496.5:c.518T>C	p.Val173Ala	p.V173A	ENST00000349496	NM_001904.3	173	gTt/gCt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277291	41277291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	114	398	0	ENST00000349496.5:c.1760G>A	p.Arg587Gln	p.R587Q	ENST00000349496	NM_001904.3	587	cGa/cAa																																																																															
MITF	4286	MSKCC	GRCh37	3	69988316	69988316	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747126448		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	108	337	0	ENST00000352241.4:c.650G>A	p.Arg217Gln	p.R217Q	ENST00000352241	NM_198159.2	217	cGa/cAa																																																																															
MITF	4286	MSKCC	GRCh37	3	70014163	70014163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	43	492	0	ENST00000352241.4:c.1327G>A	p.Asp443Asn	p.D443N	ENST00000352241	NM_198159.2	443	Gat/Aat																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873100	134873100	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	108	442	0	ENST00000398015.3:c.1404G>T	p.Glu468Asp	p.E468D	ENST00000398015	NM_004441.4	468	gaG/gaT																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138383891	138383891	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	118	320	1	ENST00000289153.2:c.2659G>T	p.Glu887Ter	p.E887*	ENST00000289153	NM_006219.2	887	Gaa/Taa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138474618	138474618	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	61	342	0	ENST00000289153.2:c.375A>C	p.Lys125Asn	p.K125N	ENST00000289153	NM_006219.2	125	aaA/aaC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913288		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	66	418	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																															
TP63	8626	MSKCC	GRCh37	3	189587113	189587113	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs148052765		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	86	298	0	ENST00000264731.3:c.1130C>T	p.Pro377Leu	p.P377L	ENST00000264731	NM_003722.4	377	cCg/cTg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1920289	1920289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146822227		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	144	479	0	ENST00000382895.3:c.1349G>A	p.Arg450Gln	p.R450Q	ENST00000382895	NM_133330.2	450	cGa/cAa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129833	55129833	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	76	385	0	ENST00000257290.5:c.368-1G>T		p.X123_splice	ENST00000257290	NM_006206.4	123																																																																																
KIT	3815	MSKCC	GRCh37	4	55561767	55561767	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780349712		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	147	404	0	ENST00000288135.5:c.157G>A	p.Glu53Lys	p.E53K	ENST00000288135	NM_000222.2	53	Gag/Aag																																																																															
KDR	3791	MSKCC	GRCh37	4	55955584	55955584	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	62	337	0	ENST00000263923.4:c.3361G>T	p.Glu1121Ter	p.E1121*	ENST00000263923	NM_002253.2	1121	Gaa/Taa																																																																															
KDR	3791	MSKCC	GRCh37	4	55970930	55970930	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	112	430	0	ENST00000263923.4:c.1867G>T	p.Asp623Tyr	p.D623Y	ENST00000263923	NM_002253.2	623	Gac/Tac																																																																															
KDR	3791	MSKCC	GRCh37	4	55972973	55972973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	25	369	0	ENST00000263923.4:c.1417G>A	p.Ala473Thr	p.A473T	ENST00000263923	NM_002253.2	473	Gct/Act																																																																															
KDR	3791	MSKCC	GRCh37	4	55981172	55981172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	54	360	0	ENST00000263923.4:c.527G>T	p.Arg176Ile	p.R176I	ENST00000263923	NM_002253.2	176	aGa/aTa																																																																															
REST	5978	MSKCC	GRCh37	4	57798251	57798251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	23	403	0	ENST00000309042.7:c.3227G>A	p.Ser1076Asn	p.S1076N	ENST00000309042	NM_005612.4	1076	aGc/aAc																																																																															
TET2	54790	MSKCC	GRCh37	4	106155280	106155280	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	26	487	0	ENST00000380013.4:c.181T>G	p.Tyr61Asp	p.Y61D	ENST00000380013	NM_001127208.2	61	Tat/Gat																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143130163	143130163	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	50	298	0	ENST00000262992.4:c.853G>T	p.Glu285Ter	p.E285*	ENST00000262992	NM_001101669.1	285	Gaa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153259070	153259070	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	50	369	0	ENST00000281708.4:c.745A>G	p.Lys249Glu	p.K249E	ENST00000281708	NM_033632.3	249	Aaa/Gaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268137	153268137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752114536		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	133	409	0	ENST00000281708.4:c.671G>A	p.Arg224Gln	p.R224Q	ENST00000281708	NM_033632.3	224	cGa/cAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187530381	187530381	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753202486		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	153	499	0	ENST00000441802.2:c.10162G>A	p.Val3388Ile	p.V3388I	ENST00000441802	NM_005245.3	3388	Gtc/Atc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35861051	35861051	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	72	390	0	ENST00000303115.3:c.180G>T	p.Glu60Asp	p.E60D	ENST00000303115	NM_002185.3	60	gaG/gaT																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751901	57751901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148954251		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	136	415	0	ENST00000274289.3:c.1336C>T	p.Arg446Trp	p.R446W	ENST00000274289	NM_006622.3	446	Cgg/Tgg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589618	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519838		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	37	282	0	ENST00000274335.5:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000274335		461	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67590466	67590466	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	97	331	0	ENST00000274335.5:c.1528G>T	p.Glu510Ter	p.E510*	ENST00000274335		510	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	89	483	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	116	466	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112176176	112176176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	164	492	0	ENST00000257430.4:c.4885C>T	p.His1629Tyr	p.H1629Y	ENST00000257430	NM_000038.5	1629	Cat/Tat																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058733	180058733	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751762446		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	105	453	0	ENST00000261937.6:c.104C>T	p.Thr35Met	p.T35M	ENST00000261937	NM_182925.4	35	aCg/aTg																																																																															
IRF4	3662	MSKCC	GRCh37	6	401631	401631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	140	618	0	ENST00000380956.4:c.953G>T	p.Trp318Leu	p.W318L	ENST00000380956	NM_001195286.1	318	tGg/tTg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911075	29911075	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	40	347	0	ENST00000376809.5:c.374G>C	p.Cys125Ser	p.C125S	ENST00000376809	NM_002116.7	125	tGc/tCc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800513	32800513	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	141	537	0	ENST00000374899.4:c.1034T>G	p.Phe345Cys	p.F345C	ENST00000374899	NM_018833.2	345	tTt/tGt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117715868	117715868	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	67	307	0	ENST00000368508.3:c.890G>T	p.Arg297Ile	p.R297I	ENST00000368508	NM_002944.2	297	aGa/aTa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163911	152163911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	101	378	0	ENST00000206249.3:c.632G>T	p.Arg211Ile	p.R211I	ENST00000206249	NM_000125.3	211	aGa/aTa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265321	152265321	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	78	382	0	ENST00000206249.3:c.774C>A	p.Asp258Glu	p.D258E	ENST00000206249	NM_000125.3	258	gaC/gaA																																																																															
CARD11	84433	MSKCC	GRCh37	7	2958193	2958193	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	38	432	3	ENST00000396946.4:c.2539C>T	p.Gln847Ter	p.Q847*	ENST00000396946	NM_032415.4	847	Cag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81381529	81381529	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	87	395	0	ENST00000222390.5:c.532C>T	p.Arg178Ter	p.R178*	ENST00000222390	NM_000601.4	178	Cga/Tga																																																																															
CDK6	1021	MSKCC	GRCh37	7	92404119	92404119	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761377867		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	20	401	0	ENST00000265734.4:c.260G>A	p.Arg87Gln	p.R87Q	ENST00000265734	NM_001259.6	87	cGa/cAa																																																																															
POT1	25913	MSKCC	GRCh37	7	124482883	124482883	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1459987627		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	54	321	0	ENST00000357628.3:c.1141C>A	p.His381Asn	p.H381N	ENST00000357628	NM_015450.2	381	Cat/Aat																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931826	68931826	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs759461290		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	85	389	0	ENST00000288368.4:c.256G>T	p.Glu86Ter	p.E86*	ENST00000288368	NM_024870.2	86	Gaa/Taa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68934328	68934328	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	73	297	0	ENST00000288368.4:c.394T>A	p.Leu132Ile	p.L132I	ENST00000288368	NM_024870.2	132	Tta/Ata																																																																															
NBN	4683	MSKCC	GRCh37	8	90965728	90965728	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs920311188		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	15	375	1	ENST00000265433.3:c.1589C>A	p.Ser530Tyr	p.S530Y	ENST00000265433	NM_002485.4	530	tCt/tAt																																																																															
CD274	29126	MSKCC	GRCh37	9	5457333	5457333	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	139	448	0	ENST00000381577.3:c.307G>T	p.Asp103Tyr	p.D103Y	ENST00000381577	NM_014143.3	103	Gat/Tat																																																																															
FANCC	2176	MSKCC	GRCh37	9	97934320	97934320	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	62	243	0	ENST00000289081.3:c.455A>C	p.Asn152Thr	p.N152T	ENST00000289081	NM_000136.2	152	aAt/aCt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44732866	44732866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	102	203	0	ENST00000377967.4:c.69G>T	p.Lys23Asn	p.K23N	ENST00000377967	NM_021140.2	23	aaG/aaT																																																																															
GATA1	2623	MSKCC	GRCh37	X	48649733	48649733	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	43	245	0	ENST00000376670.3:c.217C>A	p.Pro73Thr	p.P73T	ENST00000376670	NM_002049.3	73	Cca/Aca																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650601	48650601	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140561920		P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	150	329	0	ENST00000376670.3:c.571C>T	p.Arg191Cys	p.R191C	ENST00000376670	NM_002049.3	191	Cgt/Tgt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410201	63410201	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	121	295	0	ENST00000330258.3:c.2966A>G	p.Tyr989Cys	p.Y989C	ENST00000330258	NM_152424.3	989	tAt/tGt																																																																															
AR	367	MSKCC	GRCh37	X	66905884	66905884	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			81	60	187	0	ENST00000374690.3:c.1801G>T	p.Asp601Tyr	p.D601Y	ENST00000374690	NM_000044.3	601	Gat/Tat																																																																															
AR	367	MSKCC	GRCh37	X	66937433	66937433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	112	227	0	ENST00000374690.3:c.2287C>T	p.Leu763Phe	p.L763F	ENST00000374690	NM_000044.3	763	Ctc/Ttc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0065458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	278	504	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	513	559	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0065458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	163	354	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039405	47039405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	37	339	0	ENST00000329236.7:c.797G>A	p.Arg266His	p.R266H	ENST00000329236	NM_001204466.1	266	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			778	159	489	0	ENST00000257430.4:c.4063del	p.Ser1355LeufsTer60	p.S1355Lfs*60	ENST00000257430	NM_000038.5	1354	Ttt/tt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477184	67477184	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	424	643	0	ENST00000327367.4:c.991G>T	p.Val331Phe	p.V331F	ENST00000327367	NM_005902.3	331	Gtc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0065458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	162	294	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903715	114903724	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCGTATTA	CCCCGTATTA	-			P-0065458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	175	497	0	ENST00000543371.1:c.722_731del	p.Pro241HisfsTer7	p.P241Hfs*7	ENST00000543371	NM_001198531.1	240	tCCCCGTATTAc/tc																																																																															
ATM	472	MSKCC	GRCh37	11	108218033	108218033	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	127	399	0	ENST00000278616.4:c.8612G>C	p.Arg2871Thr	p.R2871T	ENST00000278616	NM_000051.3	2871	aGa/aCa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8517929	8517929	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	35	476	0	ENST00000356435.5:c.1462T>A	p.Tyr488Asn	p.Y488N	ENST00000356435		488	Tat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0065529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	74	441	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730882026		P-0065529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	121	414	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21336680	21336681	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760808069		P-0065529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	99	552	1	ENST00000215739.8:c.27dup	p.Gln10AlafsTer24	p.Q10Afs*24	ENST00000215739	NM_006767.3	7	acg/acGg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267194	41267194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	80	515	0	ENST00000349496.5:c.778C>T	p.His260Tyr	p.H260Y	ENST00000349496	NM_001904.3	260	Cac/Tac																																																																															
RAD21	5885	MSKCC	GRCh37	8	117861249	117861249	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	38	351	0	ENST00000297338.2:c.1640del	p.Gly547AlafsTer65	p.G547Afs*65	ENST00000297338	NM_006265.2	547	gGc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0065544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	186	374	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112174784	112174784	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0065544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	159	442	0	ENST00000257430.4:c.3493A>T	p.Lys1165Ter	p.K1165*	ENST00000257430	NM_000038.5	1165	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579469	7579469	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	242	542	0	ENST00000269305.4:c.218del	p.Val73GlyfsTer50	p.V73Gfs*50	ENST00000269305	NM_001126112.2	73	gTg/gg																																																																															
RAD51	5888	MSKCC	GRCh37	15	40990972	40990972	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	141	355	0	ENST00000267868.3:c.16C>T	p.Gln6Ter	p.Q6*	ENST00000267868	NM_002875.4	6	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830351	72830351	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	175	542	0	ENST00000268489.5:c.6230C>G	p.Ala2077Gly	p.A2077G	ENST00000268489	NM_006885.3	2077	gCa/gGa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641433	18641433	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	94	407	0	ENST00000266497.5:c.2432A>C	p.Lys811Thr	p.K811T	ENST00000266497		811	aAg/aCg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43720262	43720262	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	151	393	0	ENST00000382044.4:c.3780del	p.Asp1261MetfsTer10	p.D1261Mfs*10	ENST00000382044	NM_001141980.1	1260	acA/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0065577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	438	449	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624888	9624888	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	107	457	0	ENST00000353224.5:c.89A>G	p.Gln30Arg	p.Q30R	ENST00000353224	NM_177990.2	30	cAg/cGg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	30946592	30946594	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs752094508		P-0065577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1062	100	282	1	ENST00000375687.4:c.25_27del	p.Lys9del	p.K9del	ENST00000375687	NM_015338.5	5	cAGAag/cag																																																																															
APC	324	MSKCC	GRCh37	5	112175098	112175098	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	118	391	0	ENST00000257430.4:c.3807del	p.Cys1270ValfsTer18	p.C1270Vfs*18	ENST00000257430	NM_000038.5	1269	atA/at																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946073	13946073	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	97	334	0	ENST00000405192.2:c.1023A>T	p.Lys341Asn	p.K341N	ENST00000405192	NM_001163147.1	341	aaA/aaT																																																																															
ATM	472	MSKCC	GRCh37	11	108204642	108204642	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs747448699		P-0065622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	150	330	0	ENST00000278616.4:c.7957A>G	p.Ile2653Val	p.I2653V	ENST00000278616	NM_000051.3	2653	Att/Gtt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0065622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	125	343	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420885	49420885	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	230	557	0	ENST00000301067.7:c.14864C>G	p.Ser4955Cys	p.S4955C	ENST00000301067	NM_003482.3	4955	tCc/tGc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2130243	2130243	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45517295		P-0065622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	259	656	0	ENST00000219476.3:c.3475C>T	p.Arg1159Trp	p.R1159W	ENST00000219476	NM_000548.3	1159	Cgg/Tgg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274171	10274171	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs960622904		P-0065622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	173	486	0	ENST00000330684.3:c.98C>T	p.Ala33Val	p.A33V	ENST00000330684	NM_001134407.1	33	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0065622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	182	525	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0065622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	210	551	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291040	10291040	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			985	265	878	0	ENST00000340748.4:c.431A>T	p.Asp144Val	p.D144V	ENST00000340748		144	gAt/gTt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390094	89390094	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	149	451	0	ENST00000336596.2:c.843G>T	p.Leu281Phe	p.L281F	ENST00000336596	NM_005233.5	281	ttG/ttT																																																																															
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	389	497	0	ENST00000257430.4:c.4128del	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/ta																																																																															
IRF4	3662	MSKCC	GRCh37	6	405027	405027	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs568315642		P-0065622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	151	424	0	ENST00000380956.4:c.1109C>T	p.Ala370Val	p.A370V	ENST00000380956	NM_001195286.1	370	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0065651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			762	226	585	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0065651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	10	199	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478923	56478923	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1308361325		P-0065651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			789	101	500	0	ENST00000267101.3:c.379T>C	p.Ser127Pro	p.S127P	ENST00000267101	NM_001982.3	127	Tcc/Ccc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101095	27101096	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0065651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			905	93	553	0	ENST00000324856.7:c.4377_4378del	p.Phe1459LeufsTer31	p.F1459Lfs*31	ENST00000324856	NM_006015.4	1459	ttTGgc/ttgc																																																																															
APC	324	MSKCC	GRCh37	5	112174175	112174175	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	39	414	0	ENST00000257430.4:c.2884G>C	p.Asp962His	p.D962H	ENST00000257430	NM_000038.5	962	Gat/Cat																																																																															
APC	324	MSKCC	GRCh37	5	112174842	112174843	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CACAGATA			P-0065651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	45	440	0	ENST00000257430.4:c.3552_3559dup	p.Ile1187ThrfsTer81	p.I1187Tfs*81	ENST00000257430	NM_000038.5	1184	gcc/gcCACAGATAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0065668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	127	362	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0065668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	79	352	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0065668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	71	275	0	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579575	7579575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0065668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	399	571	0	ENST00000269305.4:c.112C>T	p.Gln38Ter	p.Q38*	ENST00000269305	NM_001126112.2	38	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112173975	112173975	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0065668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	183	406	0	ENST00000257430.4:c.2684C>G	p.Ser895Ter	p.S895*	ENST00000257430	NM_000038.5	895	tCa/tGa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11217299	11217299	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519779		P-0065668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			688	117	391	1	ENST00000361445.4:c.4379T>C	p.Leu1460Pro	p.L1460P	ENST00000361445	NM_004958.3	1460	cTt/cCt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541486	187541486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			735	221	418	0	ENST00000441802.2:c.6254C>T	p.Pro2085Leu	p.P2085L	ENST00000441802	NM_005245.3	2085	cCc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112175617	112175617	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			844	134	509	1	ENST00000257430.4:c.4326del	p.Pro1443LeufsTer30	p.P1443Lfs*30	ENST00000257430	NM_000038.5	1442	ccT/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0065668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	121	244	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133241934	133241934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			854	114	420	0	ENST00000320574.5:c.2422C>T	p.His808Tyr	p.H808Y	ENST00000320574	NM_006231.2	808	Cac/Tac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914446	32914446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	24	367	0	ENST00000380152.3:c.5954C>A	p.Ser1985Tyr	p.S1985Y	ENST00000380152		1985	tCt/tAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32936680	32936680	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80359009		P-0065668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	54	289	0	ENST00000380152.3:c.7826G>A	p.Gly2609Asp	p.G2609D	ENST00000380152		2609	gGt/gAt																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871257	35871258	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0065668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	78	313	0	ENST00000216797.5:c.915dup	p.Asp306Ter	p.D306*	ENST00000216797	NM_020529.2	305	-/T																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376364	15376365	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAGGAGGATTCGGCT			P-0065668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	181	571	0	ENST00000263377.2:c.635_649dup	p.Gln212_Pro216dup	p.Q212_P216dup	ENST00000263377	NM_058243.2	212	cct/cAGCCGAATCCTCCTCct																																																																															
GAB1	2549	MSKCC	GRCh37	4	144380619	144380619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	59	327	0	ENST00000262994.4:c.1667G>A	p.Ser556Asn	p.S556N	ENST00000262994	NM_002039.3	556	aGt/aAt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522504	67522504	+	start_lost	Translation_Start_Site	SNP	A	A	T			P-0065668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	166	314	0	ENST00000274335.5:c.1A>T	p.Met1?	p.M1?	ENST00000274335		1	Atg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0065685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	281	825	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44941830	44941831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0065685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	52	152	0	ENST00000377967.4:c.3160dup	p.Arg1054LysfsTer5	p.R1054Kfs*5	ENST00000377967	NM_021140.2	1052	gaa/gAaa																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0065685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			37	107	322	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592115	67592115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	194	600	0	ENST00000274335.5:c.1931G>A	p.Gly644Asp	p.G644D	ENST00000274335		644	gGc/gAc																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68331719	68331719	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C	rs751355274		P-0065685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			61	43	137	1	ENST00000487270.1:c.316-1G>C		p.X106_splice	ENST00000487270	NM_133509.3	106																																																																																
TET1	80312	MSKCC	GRCh37	10	70333138	70333138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	421	782	0	ENST00000373644.4:c.1043C>A	p.Ala348Asp	p.A348D	ENST00000373644	NM_030625.2	348	gCc/gAc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719784	190719784	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	63	381	0	ENST00000441310.2:c.1786A>T	p.Thr596Ser	p.T596S	ENST00000441310	NM_000534.4	596	Act/Tct																																																																															
APC	324	MSKCC	GRCh37	5	112174144	112174144	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0065708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	85	373	0	ENST00000257430.4:c.2853T>A	p.Tyr951Ter	p.Y951*	ENST00000257430	NM_000038.5	951	taT/taA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577530	7577530	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	64	347	0	ENST00000269305.4:c.751A>T	p.Ile251Phe	p.I251F	ENST00000269305	NM_001126112.2	251	Atc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913240		P-0065708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	62	313	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914275	32914275	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	97	331	0	ENST00000380152.3:c.5785del	p.Ile1929PhefsTer34	p.I1929Ffs*34	ENST00000380152		1928	gAa/ga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039831	47039831	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	12	176	0	ENST00000329236.7:c.940A>T	p.Asn314Tyr	p.N314Y	ENST00000329236	NM_001204466.1	314	Aat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578384	7578384	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	279	494	0	ENST00000269305.4:c.546C>A	p.Cys182Ter	p.C182*	ENST00000269305	NM_001126112.2	182	tgC/tgA																																																																															
KDM5A	5927	MSKCC	GRCh37	12	422242	422242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769792722		P-0065711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	169	326	0	ENST00000399788.2:c.3016G>A	p.Ala1006Thr	p.A1006T	ENST00000399788	NM_001042603.1	1006	Gct/Act																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286229	66286229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	153	314	0	ENST00000273854.3:c.1457C>T	p.Ser486Phe	p.S486F	ENST00000273854	NM_004439.5	486	tCt/tTt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229608	5229608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	75	320	0	ENST00000357368.4:c.2243G>A	p.Arg748Gln	p.R748Q	ENST00000357368	NM_002850.3	748	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711237	114711242	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTAGC	GTTAGC	-			P-0065711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	178	239	0	ENST00000543371.1:c.257-4_258del		p.X86_splice	ENST00000543371	NM_001198531.1	86																																																																																
PRKD1	5587	MSKCC	GRCh37	14	30066843	30066843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	88	332	0	ENST00000331968.5:c.2288C>T	p.Ser763Phe	p.S763F	ENST00000331968	NM_002742.2	763	tCt/tTt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99491818	99491831	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCTGGGAGATCG	CCTCTGGGAGATCG	-			P-0065711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	31	332	1	ENST00000268035.6:c.3605_3618del	p.Leu1202HisfsTer33	p.L1202Hfs*33	ENST00000268035	NM_000875.3	1201	gtCCTCTGGGAGATCGcc/gtcc																																																																															
ATR	545	MSKCC	GRCh37	3	142253963	142253963	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	74	239	0	ENST00000350721.4:c.3904C>G	p.His1302Asp	p.H1302D	ENST00000350721	NM_001184.3	1302	Cat/Gat																																																																															
ATR	545	MSKCC	GRCh37	3	142253983	142253983	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	82	255	0	ENST00000350721.4:c.3884A>G	p.Glu1295Gly	p.E1295G	ENST00000350721	NM_001184.3	1295	gAa/gGa																																																																															
APC	324	MSKCC	GRCh37	5	112175243	112175250	+	frameshift_variant	Frame_Shift_Del	DEL	GATCCTGT	GATCCTGT	-			P-0065711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	286	363	0	ENST00000257430.4:c.3954_3961del	p.Asp1318GlufsTer11	p.D1318Efs*11	ENST00000257430	NM_000038.5	1318	GATCCTGTg/g																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343684	118343684	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	89	508	0	ENST00000534358.1:c.1810A>C	p.Met604Leu	p.M604L	ENST00000534358	NM_005933.3	604	Atg/Ctg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376680	118376680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	118	615	0	ENST00000534358.1:c.10073G>A	p.Ser3358Asn	p.S3358N	ENST00000534358	NM_005933.3	3358	aGt/aAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0065716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	81	346	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829368	72829368	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201280219		P-0065716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	83	544	0	ENST00000268489.5:c.7213G>A	p.Ala2405Thr	p.A2405T	ENST00000268489	NM_006885.3	2405	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0065716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	120	447	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
NF1	4763	MSKCC	GRCh37	17	29562641	29562641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854562		P-0065716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	113	336	0	ENST00000358273.4:c.3721C>T	p.Arg1241Ter	p.R1241*	ENST00000358273	NM_001042492.2	1241	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29654736	29654736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs797045139		P-0065716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	48	555	0	ENST00000358273.4:c.5488C>T	p.Arg1830Cys	p.R1830C	ENST00000358273	NM_001042492.2	1830	Cgc/Tgc																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428299	33428299	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368914740		P-0065716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	86	577	0	ENST00000335858.7:c.488G>A	p.Arg163Gln	p.R163Q	ENST00000335858	NM_133629.2	163	cGg/cAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	153	526	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31388078	31388078	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1477651398		P-0065716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	127	495	1	ENST00000328111.2:c.1879G>A	p.Asp627Asn	p.D627N	ENST00000328111	NM_006892.3	627	Gac/Aac																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71096243	71096244	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0065716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	87	486	0	ENST00000318789.4:c.513dup	p.Gln172ThrfsTer123	p.Q172Tfs*123	ENST00000318789	NM_032682.5	171	-/A																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0065716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	106	533	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112173496	112173496	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	82	499	0	ENST00000257430.4:c.2205del	p.Lys736SerfsTer25	p.K736Sfs*25	ENST00000257430	NM_000038.5	735	gcG/gc																																																																															
APC	324	MSKCC	GRCh37	5	112175757	112175758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0065716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	88	555	0	ENST00000257430.4:c.4467dup	p.His1490ThrfsTer24	p.H1490Tfs*24	ENST00000257430	NM_000038.5	1489	tta/ttAa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553617	106553617	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773441438		P-0065716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	94	668	0	ENST00000369096.4:c.1582G>A	p.Val528Met	p.V528M	ENST00000369096	NM_001198.3	528	Gtg/Atg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44920620	44920620	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	79	132	0	ENST00000377967.4:c.1381C>T	p.Gln461Ter	p.Q461*	ENST00000377967	NM_021140.2	461	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097622	27097622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	232	594	0	ENST00000324856.7:c.3216del	p.Lys1072AsnfsTer21	p.K1072Nfs*21	ENST00000324856	NM_006015.4	1071	Aaa/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105737	27105737	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	219	667	0	ENST00000324856.7:c.5351del	p.Asn1784MetfsTer5	p.N1784Mfs*5	ENST00000324856	NM_006015.4	1783	gAa/ga																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598212	28598212	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769648213		P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	237	702	0	ENST00000253063.3:c.184G>A	p.Glu62Lys	p.E62K	ENST00000253063	NM_031459.4	62	Gag/Aag																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51436090	51436090	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	258	544	0	ENST00000262662.1:c.50A>G	p.Asp17Gly	p.D17G	ENST00000262662		17	gAc/gGc																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230461096	230461096	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs932562245		P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	194	519	0	ENST00000525115.1:c.1132C>T	p.His378Tyr	p.H378Y	ENST00000525115		378	Cac/Tac																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230468644	230468644	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	57	630	0	ENST00000525115.1:c.1012T>C	p.Tyr338His	p.Y338H	ENST00000525115		338	Tac/Cac																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274678	123274678	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769880096		P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	39	567	0	ENST00000358487.5:c.1240G>A	p.Ala414Thr	p.A414T	ENST00000358487	NM_000141.4	414	Gct/Act																																																																															
ATM	472	MSKCC	GRCh37	11	108199921	108199921	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	54	442	0	ENST00000278616.4:c.7263A>C	p.Lys2421Asn	p.K2421N	ENST00000278616	NM_000051.3	2421	aaA/aaC																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344053	118344055	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	181	600	0	ENST00000534358.1:c.2184_2186del	p.Ser729del	p.S729del	ENST00000534358	NM_005933.3	727	TCT/-																																																																															
ETV6	2120	MSKCC	GRCh37	12	12006400	12006400	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	227	613	0	ENST00000396373.4:c.368A>C	p.Gln123Pro	p.Q123P	ENST00000396373	NM_001987.4	123	cAg/cCg																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945008	31945008	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	280	694	0	ENST00000340398.3:c.93del	p.Ser32LeufsTer5	p.S32Lfs*5	ENST00000340398	NM_001013699.2	31	ccC/cc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112323	115112324	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-	rs1381943852		P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	271	686	2	ENST00000257566.3:c.1416_1417del	p.Leu473ProfsTer218	p.L473Pfs*218	ENST00000257566	NM_016569.3	472	gcGCtc/gctc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	57	806	6	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30108105	30108105	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	20	381	0	ENST00000331968.5:c.702del	p.Lys234AsnfsTer30	p.K234Nfs*30	ENST00000331968	NM_002742.2	234	aaA/aa																																																																															
MGA	23269	MSKCC	GRCh37	15	42002912	42002912	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	102	418	0	ENST00000219905.7:c.2453del	p.Asn818IlefsTer10	p.N818Ifs*10	ENST00000219905	NM_001164273.1	817	Aaa/aa																																																																															
CD276	80381	MSKCC	GRCh37	15	73996257	73996257	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775475628		P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			34	65	114	0	ENST00000318443.5:c.991C>T	p.Arg331Cys	p.R331C	ENST00000318443	NM_001024736.1	331	Cgt/Tgt																																																																															
BLM	641	MSKCC	GRCh37	15	91292816	91292817	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs781221411		P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	413	556	0	ENST00000355112.3:c.320dup	p.Leu107PhefsTer36	p.L107Ffs*36	ENST00000355112	NM_000057.2	106	-/T																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81990304	81990304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	219	516	0	ENST00000359376.3:c.3575G>A	p.Ser1192Asn	p.S1192N	ENST00000359376	NM_002661.3	1192	aGc/aAc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12044505	12044505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	45	478	0	ENST00000353533.5:c.1128G>T	p.Glu376Asp	p.E376D	ENST00000353533	NM_003010.3	376	gaG/gaT																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	187	724	1	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	516	910	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761412	59761415	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-	rs786203717		P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	423	477	0	ENST00000259008.2:c.2992_2995del	p.Lys998GlufsTer60	p.K998Efs*60	ENST00000259008	NM_032043.2	998	AAGAga/ga																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031339	11031339	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	237	788	0	ENST00000327064.4:c.1339A>C	p.Ser447Arg	p.S447R	ENST00000327064	NM_199141.1	447	Agc/Cgc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354058	15354058	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	108	450	0	ENST00000263377.2:c.2822del	p.Pro941LeufsTer8	p.P941Lfs*8	ENST00000263377	NM_058243.2	941	cCt/ct																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367969	15367969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759001252		P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	30	566	0	ENST00000263377.2:c.1357C>T	p.Arg453Cys	p.R453C	ENST00000263377	NM_058243.2	453	Cgc/Tgc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945988	17945988	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747131454		P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	261	722	0	ENST00000458235.1:c.1951C>T	p.Arg651Trp	p.R651W	ENST00000458235	NM_000215.3	651	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214871	36214871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	211	627	4	ENST00000222270.7:c.3302del	p.Pro1101LeufsTer81	p.P1101Lfs*81	ENST00000222270	NM_014727.1	1099	ggC/gg																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	202	726	3	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	153	610	4	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
CASP8	841	MSKCC	GRCh37	2	202150039	202150039	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs1368296717		P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	208	626	0	ENST00000358485.4:c.1480C>T	p.Arg494Ter	p.R494*	ENST00000358485	NM_001080125.1	494	Cga/Tga																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326764	62326764	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	228	762	0	ENST00000482936.1:c.3583G>A	p.Ala1195Thr	p.A1195T	ENST00000482936		1195	Gcg/Acg																																																																															
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	76	460	1	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	340	536	13	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748023	41748028	+	inframe_deletion	In_Frame_Del	DEL	GCCGCG	GCCGCG	-			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	48	230	0	ENST00000226382.2:c.741_746del	p.Ala259_Ala260del	p.A259_A260del	ENST00000226382	NM_003924.3	247	gcCGCGGCa/gca																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	122	456	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175211	112175211	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	184	550	0	ENST00000257430.4:c.3920del	p.Ile1307LysfsTer14	p.I1307Kfs*14	ENST00000257430	NM_000038.5	1307	aTa/aa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520159	176520159	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766591955		P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	215	753	0	ENST00000292408.4:c.1078G>A	p.Ala360Thr	p.A360T	ENST00000292408	NM_213647.1	360	Gca/Aca																																																																															
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	106	664	3	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176700691	176700691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	220	477	0	ENST00000439151.2:c.5528C>T	p.Ala1843Val	p.A1843V	ENST00000439151	NM_022455.4	1843	gCa/gTa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721024	176721024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	271	732	0	ENST00000439151.2:c.6655C>T	p.Arg2219Cys	p.R2219C	ENST00000439151	NM_022455.4	2219	Cgt/Tgt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323265	31323265	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs41564218		P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	97	274	0	ENST00000412585.2:c.724C>T	p.Gln242Ter	p.Q242*	ENST00000412585	NM_005514.6	242	Cag/Tag																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004256	150004256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	123	480	0	ENST00000253339.5:c.1969C>T	p.Arg657Cys	p.R657C	ENST00000253339		657	Cgt/Tgt																																																																															
MET	4233	MSKCC	GRCh37	7	116397828	116397828	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	128	404	1	ENST00000397752.3:c.2102G>T	p.Ser701Ile	p.S701I	ENST00000397752	NM_000245.2	701	aGt/aTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	190	454	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879490	151879490	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	285	647	0	ENST00000262189.6:c.5455A>G	p.Met1819Val	p.M1819V	ENST00000262189	NM_170606.2	1819	Atg/Gtg																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345760	152345760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	172	433	2	ENST00000359321.1:c.810del	p.Phe270LeufsTer27	p.F270Lfs*27	ENST00000359321	NM_005431.1	270	ttT/tt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38184337	38184337	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	42	424	0	ENST00000317025.8:c.1619A>G	p.Gln540Arg	p.Q540R	ENST00000317025	NM_023034.1	540	cAa/cGa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371734	55371734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	197	710	0	ENST00000297316.4:c.424C>T	p.Arg142Cys	p.R142C	ENST00000297316	NM_022454.3	142	Cgc/Tgc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5029792	5029792	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	93	418	0	ENST00000381652.3:c.236C>A	p.Pro79His	p.P79H	ENST00000381652	NM_004972.3	79	cCt/cAt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486090	8486090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	232	624	0	ENST00000356435.5:c.2727G>T	p.Lys909Asn	p.K909N	ENST00000356435		909	aaG/aaT																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894950	101894950	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777965779		P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	148	522	0	ENST00000374994.4:c.503G>A	p.Arg168His	p.R168H	ENST00000374994	NM_004612.2	168	cGc/cAc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249714	110249714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	153	641	0	ENST00000374672.4:c.961C>A	p.Leu321Ile	p.L321I	ENST00000374672	NM_004235.4	321	Ctt/Att																																																																															
STAG2	10735	MSKCC	GRCh37	X	123191804	123191805	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1392503050		P-0065720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	17	355	0	ENST00000218089.9:c.1400dup	p.Phe468LeufsTer5	p.F468Lfs*5	ENST00000218089	NM_001042749.1	465	gtt/gTtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0065727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	17	603	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0065727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	52	579	6	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866663	37866663	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	121	628	0	ENST00000269571.5:c.830A>T	p.Asp277Val	p.D277V	ENST00000269571		277	gAc/gTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140477853	140477853	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs180177036		P-0065727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	125	370	0	ENST00000288602.6:c.1455G>T	p.Leu485Phe	p.L485F	ENST00000288602	NM_004333.4	485	ttG/ttT																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793263	242793263	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754424677		P-0065727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	57	510	2	ENST00000334409.5:c.814C>T	p.Arg272Trp	p.R272W	ENST00000334409	NM_005018.2	272	Cgg/Tgg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905560	50905560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	71	749	0	ENST00000440232.2:c.688G>A	p.Gly230Ser	p.G230S	ENST00000440232	NM_002691.3	230	Ggc/Agc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874644	35874644	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0065727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	116	352	0	ENST00000303115.3:c.800G>T	p.Arg267Met	p.R267M	ENST00000303115	NM_002185.3	267	aGg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0065727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	108	307	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437100	110437100	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs893531150		P-0065727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	25	441	0	ENST00000375856.3:c.1301C>T	p.Pro434Leu	p.P434L	ENST00000375856	NM_003749.2	434	cCc/cTc																																																																															
AURKB	9212	MSKCC	GRCh37	17	8111127	8111127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370931710		P-0065727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	77	407	0	ENST00000585124.1:c.80G>A	p.Arg27Gln	p.R27Q	ENST00000585124	NM_004217.3	27	cGa/cAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980729	40980729	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs374504796		P-0065727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	200	433	0	ENST00000373198.4:c.1757T>C	p.Ile586Thr	p.I586T	ENST00000373198	NM_133170.3	586	aTt/aCt																																																																															
APC	324	MSKCC	GRCh37	5	112174732	112174732	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	135	460	0	ENST00000257430.4:c.3441C>A	p.Tyr1147Ter	p.Y1147*	ENST00000257430	NM_000038.5	1147	taC/taA																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968118	68968118	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	122	359	0	ENST00000288368.4:c.1147G>T	p.Glu383Ter	p.E383*	ENST00000288368	NM_024870.2	383	Gag/Tag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69058485	69058485	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1041364032		P-0065727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	38	346	0	ENST00000288368.4:c.4129C>G	p.Leu1377Val	p.L1377V	ENST00000288368	NM_024870.2	1377	Ctg/Gtg																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46531806	46531807	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0065730-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	102	239	0	ENST00000262741.5:c.540dup	p.Leu181ThrfsTer13	p.L181Tfs*13	ENST00000262741	NM_003629.3	180	-/A																																																																															
JUN	3725	MSKCC	GRCh37	1	59247943	59247943	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065730-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	114	603	0	ENST00000371222.2:c.800C>T	p.Ser267Phe	p.S267F	ENST00000371222	NM_002228.3	267	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0065730-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	201	372	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266827	198266827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065730-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	81	366	2	ENST00000335508.6:c.2105G>A	p.Arg702Gln	p.R702Q	ENST00000335508	NM_012433.2	702	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112164584	112164584	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs863225318		P-0065730-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	201	351	0	ENST00000257430.4:c.1658G>A	p.Trp553Ter	p.W553*	ENST00000257430	NM_000038.5	553	tGg/tAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117771	70117772	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCTCAAAGGCTACGACTG			P-0065730-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	164	536	0	ENST00000245479.2:c.241_258dup	p.Leu81_Trp86dup	p.L81_W86dup	ENST00000245479	NM_000346.3	81	gtg/gtGCTCAAAGGCTACGACTGg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120236	70120237	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0065730-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	139	509	0	ENST00000245479.2:c.1239dup	p.Ser414LeufsTer164	p.S414Lfs*164	ENST00000245479	NM_000346.3	413	cac/caCc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67590388	67590400	+	frameshift_variant	Frame_Shift_Del	DEL	ATTGAAGCATTTA	ATTGAAGCATTTA	-			P-0065730-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	131	323	0	ENST00000274335.5:c.1452_1464del	p.Ile484MetfsTer4	p.I484Mfs*4	ENST00000274335		484	ATTGAAGCATTTAat/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0065733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	189	343	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457303	67457303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs768713596		P-0065733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	281	749	1	ENST00000327367.4:c.277C>T	p.Arg93Ter	p.R93*	ENST00000327367	NM_005902.3	93	Cga/Tga																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	211	409	0	ENST00000262160.6:c.1391C>A	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tAa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1623951	1623951	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs374988827		P-0065733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	103	404	0	ENST00000344749.5:c.548C>T	p.Ser183Leu	p.S183L	ENST00000344749	NM_001136139.2	183	tCg/tTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41523630	41523630	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	272	601	0	ENST00000263253.7:c.1046A>G	p.His349Arg	p.H349R	ENST00000263253	NM_001429.3	349	cAc/cGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	59	224	0	ENST00000263967.3:c.1034A>G	p.Asn345Ser	p.N345S	ENST00000263967	NM_006218.2	345	aAt/aGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0065733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	73	390	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738639	145738639	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769977498		P-0065733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	118	751	0	ENST00000428558.2:c.2425G>A	p.Gly809Arg	p.G809R	ENST00000428558	NM_004260.3	809	Ggg/Agg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900330	101900330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	103	301	0	ENST00000374994.4:c.764G>A	p.Arg255His	p.R255H	ENST00000374994	NM_004612.2	255	cGt/cAt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44966698	44966698	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	209	195	0	ENST00000377967.4:c.3922G>T	p.Glu1308Ter	p.E1308*	ENST00000377967	NM_021140.2	1308	Gaa/Taa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039903	47039903	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0065733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	97	223	0	ENST00000329236.7:c.1012C>T	p.Gln338Ter	p.Q338*	ENST00000329236	NM_001204466.1	338	Cag/Tag																																																																															
GAB2	9846	MSKCC	GRCh37	11	77936216	77936216	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373502813		P-0065733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	96	495	0	ENST00000361507.4:c.1240C>T	p.Arg414Cys	p.R414C	ENST00000361507	NM_080491.2	414	Cgt/Tgt																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870891	12870892	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0065733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			708	157	590	0	ENST00000228872.4:c.118_119insT	p.Glu40ValfsTer85	p.E40Vfs*85	ENST00000228872	NM_004064.3	40	gag/gTag																																																																															
AKT2	208	MSKCC	GRCh37	19	40742214	40742214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	197	579	0	ENST00000392038.2:c.910G>A	p.Gly304Arg	p.G304R	ENST00000392038	NM_001626.4	304	Ggg/Agg																																																																															
APC	324	MSKCC	GRCh37	5	112174668	112174668	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	263	411	0	ENST00000257430.4:c.3377del	p.Ser1126ThrfsTer39	p.S1126Tfs*39	ENST00000257430	NM_000038.5	1126	aGc/ac																																																																															
APC	324	MSKCC	GRCh37	5	112175710	112175711	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0065733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	232	536	0	ENST00000257430.4:c.4419_4420insA	p.Ala1474SerfsTer13	p.A1474Sfs*13	ENST00000257430	NM_000038.5	1473	-/A																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185184621	185184621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	129	519	0	ENST00000265026.3:c.1513C>T	p.Gln505Ter	p.Q505*	ENST00000265026	NM_004721.4	505	Caa/Taa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44911001	44911002	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0065741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	118	630	0	ENST00000377967.4:c.705_706del	p.Asn236SerfsTer26	p.N236Sfs*26	ENST00000377967	NM_021140.2	234	acAGag/acag																																																																															
RB1	5925	MSKCC	GRCh37	13	49033823	49033823	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0065741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	105	392	0	ENST00000267163.4:c.1961-1G>C		p.X654_splice	ENST00000267163	NM_000321.2	654																																																																																
AKT1	207	MSKCC	GRCh37	14	105241487	105241487	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	174	652	0	ENST00000349310.3:c.493A>T	p.Ile165Phe	p.I165F	ENST00000349310	NM_001014432.1	165	Atc/Ttc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15989717	15989717	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	173	547	0	ENST00000268712.3:c.3056C>G	p.Pro1019Arg	p.P1019R	ENST00000268712	NM_006311.3	1019	cCt/cGt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161922	47161922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	131	445	0	ENST00000409792.3:c.4204G>T	p.Gly1402Trp	p.G1402W	ENST00000409792	NM_014159.6	1402	Ggg/Tgg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0065794-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	38	413	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0065794-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	186	631	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436393	52436393	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1244342890		P-0065794-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	65	618	0	ENST00000460680.1:c.2101C>T	p.Arg701Cys	p.R701C	ENST00000460680	NM_004656.3	701	Cgc/Tgc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957882	1957882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065794-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	37	470	0	ENST00000382895.3:c.2848G>A	p.Gly950Arg	p.G950R	ENST00000382895	NM_133330.2	950	Ggg/Agg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783856	50783857	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0065794-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	55	502	0	ENST00000398568.2:c.248_249del	p.Phe83CysfsTer2	p.F83Cfs*2	ENST00000398568	NM_001042412.1	83	TTt/t																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2077691	2077691	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065794-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	37	475	0	ENST00000349721.2:c.2099C>G	p.Ser700Cys	p.S700C	ENST00000349721	NM_003070.3	700	tCc/tGc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436182	56436183	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CT			P-0065794-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	76	458	0	ENST00000407977.2:c.953_954dup	p.Gly319ArgfsTer101	p.G319Rfs*101	ENST00000407977		318	-/AG																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775955	9775955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	141	585	0	ENST00000377346.4:c.419G>A	p.Arg140His	p.R140H	ENST00000377346	NM_005026.3	140	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023016	27023016	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1295137307		P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	152	514	0	ENST00000324856.7:c.122C>T	p.Ala41Val	p.A41V	ENST00000324856	NM_006015.4	41	gCg/gTg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150902567	150902567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	174	388	0	ENST00000271640.5:c.385G>A	p.Asp129Asn	p.D129N	ENST00000271640	NM_001145415.1	129	Gat/Aat																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150912438	150912438	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	143	301	0	ENST00000271640.5:c.438del	p.Asp147ThrfsTer11	p.D147Tfs*11	ENST00000271640	NM_001145415.1	145	ccA/cc																																																																															
TET1	80312	MSKCC	GRCh37	10	70426934	70426934	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1241056232		P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	181	469	0	ENST00000373644.4:c.4594C>T	p.Arg1532Trp	p.R1532W	ENST00000373644	NM_030625.2	1532	Cgg/Tgg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123256128	123256128	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	133	413	0	ENST00000358487.5:c.1781C>A	p.Pro594His	p.P594H	ENST00000358487	NM_000141.4	594	cCt/cAt																																																																															
PGR	5241	MSKCC	GRCh37	11	100998840	100998840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	98	578	0	ENST00000325455.5:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000325455	NM_001202474.3	321	cGg/cAg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	198	530	10	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	498154	498154	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	181	566	0	ENST00000399788.2:c.104T>C	p.Phe35Ser	p.F35S	ENST00000399788	NM_001042603.1	35	tTt/tCt																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480106	50480106	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	60	412	0	ENST00000394963.4:c.340C>T	p.Gln114Ter	p.Q114*	ENST00000394963	NM_003076.4	114	Cag/Tag																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	200	630	10	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
POLE	5426	MSKCC	GRCh37	12	133210819	133210819	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	92	522	0	ENST00000320574.5:c.5957del	p.Leu1986CysfsTer13	p.L1986Cfs*13	ENST00000320574	NM_006231.2	1986	tTg/tg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562886	21562886	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	170	680	0	ENST00000382592.4:c.1033C>T	p.Gln345Ter	p.Q345*	ENST00000382592	NM_014572.2	345	Cag/Tag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436644	110436644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	194	662	0	ENST00000375856.3:c.1757C>T	p.Pro586Leu	p.P586L	ENST00000375856	NM_003749.2	586	cCg/cTg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748803	43748803	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	154	461	0	ENST00000382044.4:c.2003A>G	p.Glu668Gly	p.E668G	ENST00000382044	NM_001141980.1	668	gAg/gGg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799215	88799215	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs779387312		P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	68	466	0	ENST00000360948.2:c.170T>C	p.Leu57Pro	p.L57P	ENST00000360948	NM_001012338.2	57	cTg/cCg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354360	354360	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	223	472	1	ENST00000262320.3:c.1198C>T	p.Gln400Ter	p.Q400*	ENST00000262320	NM_003502.3	400	Cag/Tag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	139	511	3	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14042196	14042196	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	203	493	0	ENST00000311895.7:c.2747del	p.Lys916SerfsTer4	p.K916Sfs*4	ENST00000311895	NM_005236.2	915	Aaa/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831026	72831026	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs61737017		P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	203	591	0	ENST00000268489.5:c.5555A>C	p.Gln1852Pro	p.Q1852P	ENST00000268489	NM_006885.3	1852	cAg/cCg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81968118	81968118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	110	395	0	ENST00000359376.3:c.2827del	p.Thr943ProfsTer5	p.T943Pfs*5	ENST00000359376	NM_002661.3	942	Aaa/aa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618327	37618327	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	170	445	0	ENST00000447079.4:c.3G>A	p.Met1?	p.M1?	ENST00000447079	NM_015083.1	1	atG/atA																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	184	525	2	ENST00000447079.4:c.4382del	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40379634	40379634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	163	389	0	ENST00000293328.3:c.198G>T	p.Gln66His	p.Q66H	ENST00000293328	NM_012448.3	66	caG/caT																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453399	40453399	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs759027671		P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	230	532	7	ENST00000345506.4:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000345506	NM_003152.3	366	Ccc/cc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40876402	40876402	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	205	426	0	ENST00000428826.2:c.287A>C	p.His96Pro	p.H96P	ENST00000428826		96	cAt/cCt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	447	642	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	200	531	3	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	138	470	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604668	48604668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	172	458	0	ENST00000342988.3:c.1490G>A	p.Arg497His	p.R497H	ENST00000342988	NM_005359.5	497	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604704	48604704	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	158	534	1	ENST00000342988.3:c.1529del	p.Gly510AspfsTer27	p.G510Dfs*27	ENST00000342988	NM_005359.5	509	tGg/tg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	113	523	1	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11024683	11024683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	236	458	0	ENST00000327064.4:c.800G>A	p.Arg267His	p.R267H	ENST00000327064	NM_199141.1	267	cGc/cAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121173	11121173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	171	517	0	ENST00000344626.4:c.2240C>T	p.Ala747Val	p.A747V	ENST00000344626	NM_003072.3	747	gCg/gTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288710	15288710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	99	493	0	ENST00000263388.2:c.4029del	p.Cys1344ValfsTer76	p.C1344Vfs*76	ENST00000263388	NM_000435.2	1343	ccC/cc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257082	19257082	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	31	440	0	ENST00000162023.5:c.881G>T	p.Ser294Ile	p.S294I	ENST00000162023		294	aGt/aTt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220070	36220070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	190	629	1	ENST00000222270.7:c.4790G>A	p.Arg1597Gln	p.R1597Q	ENST00000222270	NM_014727.1	1597	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223858	36223858	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	190	693	2	ENST00000222270.7:c.6413del	p.Pro2138ArgfsTer15	p.P2138Rfs*15	ENST00000222270	NM_014727.1	2136	ctC/ct																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140171	50140171	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1437320392		P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	196	594	0	ENST00000246792.3:c.254C>T	p.Ala85Val	p.A85V	ENST00000246792	NM_006270.3	85	gCg/gTg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	125	590	2	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	205	520	6	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728608	190728608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	163	426	0	ENST00000441310.2:c.1996C>T	p.His666Tyr	p.H666Y	ENST00000441310	NM_000534.4	666	Cac/Tac																																																																															
CUL3	8452	MSKCC	GRCh37	2	225422551	225422551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	103	248	0	ENST00000264414.4:c.89T>C	p.Val30Ala	p.V30A	ENST00000264414	NM_003590.4	30	gTa/gCa																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445999	29445999	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	163	555	2	ENST00000544604.2:c.1835del	p.Gly612AlafsTer54	p.G612Afs*54	ENST00000544604	NM_001206998.1	610	gcG/gc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37035100	37035100	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs63750706		P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	138	438	0	ENST00000231790.2:c.62C>T	p.Ala21Val	p.A21V	ENST00000231790	NM_000249.3	21	gCg/gTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165213	47165213	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	185	391	0	ENST00000409792.3:c.913del	p.Thr305GlnfsTer35	p.T305Qfs*35	ENST00000409792	NM_014159.6	305	Aca/ca																																																																															
MITF	4286	MSKCC	GRCh37	3	70001001	70001001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	74	389	1	ENST00000352241.4:c.901G>A	p.Ala301Thr	p.A301T	ENST00000352241	NM_198159.2	301	Gcc/Acc																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374795	149374795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	154	444	0	ENST00000360632.3:c.299C>T	p.Ala100Val	p.A100V	ENST00000360632	NM_015472.4	100	gCg/gTg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146665	185146665	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1208061276		P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	228	461	0	ENST00000265026.3:c.296A>G	p.Gln99Arg	p.Q99R	ENST00000265026	NM_004721.4	99	cAg/cGg																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99802232	99802232	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200243582		P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			43	29	56	0	ENST00000280892.6:c.661G>A	p.Ala221Thr	p.A221T	ENST00000280892	NM_001130678.1	221	Gca/Aca																																																																															
TET2	54790	MSKCC	GRCh37	4	106158446	106158447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs748419340		P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	121	431	0	ENST00000380013.4:c.3353dup	p.Asn1118LysfsTer12	p.N1118Kfs*12	ENST00000380013	NM_001127208.2	1116	ata/atAa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754342	57754342	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	235	433	0	ENST00000274289.3:c.509T>A	p.Ile170Asn	p.I170N	ENST00000274289	NM_006622.3	170	aTt/aAt																																																																															
MSH3	4437	MSKCC	GRCh37	5	80160739	80160739	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	106	372	0	ENST00000265081.6:c.3108G>T	p.Glu1036Asp	p.E1036D	ENST00000265081	NM_002439.4	1036	gaG/gaT																																																																															
APC	324	MSKCC	GRCh37	5	112174982	112174982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs573020080		P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	48	435	0	ENST00000257430.4:c.3691C>T	p.Leu1231Phe	p.L1231F	ENST00000257430	NM_000038.5	1231	Ctc/Ttc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931452	131931452	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772667708		P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	190	390	12	ENST00000265335.6:c.2165del	p.Lys722ArgfsTer14	p.K722Rfs*14	ENST00000265335		719	ctA/ct																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239494	31239494	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	132	756	0	ENST00000376228.5:c.225G>T	p.Trp75Cys	p.W75C	ENST00000376228	NM_002117.5	75	tgG/tgT																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652165	36652165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	184	537	0	ENST00000244741.5:c.287G>A	p.Gly96Asp	p.G96D	ENST00000244741	NM_000389.4	96	gGc/gAc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199885	138199885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	230	571	0	ENST00000237289.4:c.1303C>T	p.Leu435Phe	p.L435F	ENST00000237289	NM_001270507.1	435	Ctc/Ttc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157517354	157517354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	159	356	0	ENST00000346085.5:c.3918G>A	p.Met1306Ile	p.M1306I	ENST00000346085	NM_020732.3	1306	atG/atA																																																																															
MET	4233	MSKCC	GRCh37	7	116339935	116339935	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	232	401	0	ENST00000397752.3:c.797G>T	p.Arg266Met	p.R266M	ENST00000397752	NM_000245.2	266	aGg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151946988	151946988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	131	295	1	ENST00000262189.6:c.1786C>A	p.Leu596Ile	p.L596I	ENST00000262189	NM_170606.2	596	Ctt/Att																																																																															
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	33	386	2	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80336403	80336403	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	234	478	0	ENST00000286548.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000286548	NM_002072.3	306	Cga/Tga																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80430562	80430562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	24	200	0	ENST00000286548.4:c.446G>A	p.Arg149Gln	p.R149Q	ENST00000286548	NM_002072.3	149	cGa/cAa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98268793	98268793	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	187	497	2	ENST00000331920.6:c.290del	p.Asn97ThrfsTer20	p.N97Tfs*20	ENST00000331920	NM_000264.3	97	aAc/ac																																																																															
AR	367	MSKCC	GRCh37	X	66765119	66765119	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs962089572		P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	111	459	0	ENST00000374690.3:c.131C>T	p.Ala44Val	p.A44V	ENST00000374690	NM_000044.3	44	gCc/gTc																																																																															
MED12	9968	MSKCC	GRCh37	X	70362060	70362060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777818556		P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	140	397	0	ENST00000374080.3:c.6526C>T	p.Arg2176Cys	p.R2176C	ENST00000374080		2176	Cgc/Tgc																																																																															
ATRX	546	MSKCC	GRCh37	X	76920173	76920173	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	38	337	4	ENST00000373344.5:c.3904del	p.Arg1302GlufsTer44	p.R1302Efs*44	ENST00000373344	NM_000489.3	1302	Aga/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0065928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			797	183	614	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0065928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	154	449	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850736	63850736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149466999		P-0065928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			750	167	544	0	ENST00000279873.7:c.1514C>T	p.Ala505Val	p.A505V	ENST00000279873	NM_032199.2	505	gCg/gTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0065928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	91	283	0	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	131	373	0	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366308	15366308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			737	122	485	0	ENST00000263377.2:c.1847G>A	p.Arg616Gln	p.R616Q	ENST00000263377	NM_058243.2	616	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575186	48575186	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	88	302	0	ENST00000342988.3:c.380G>C	p.Cys127Ser	p.C127S	ENST00000342988	NM_005359.5	127	tGt/tCt																																																																															
APC	324	MSKCC	GRCh37	5	112178211	112178211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs901983934		P-0065936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	163	379	0	ENST00000257430.4:c.6920C>T	p.Ser2307Leu	p.S2307L	ENST00000257430	NM_000038.5	2307	tCg/tTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624298	89624298	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	9	277	0	ENST00000371953.3:c.72C>G	p.Asp24Glu	p.D24E	ENST00000371953	NM_000314.4	24	gaC/gaG																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821638	72821638	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200561133		P-0065936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	103	454	0	ENST00000268489.5:c.10537A>G	p.Ser3513Gly	p.S3513G	ENST00000268489	NM_006885.3	3513	Agt/Ggt																																																																															
APC	324	MSKCC	GRCh37	5	112174266	112174267	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0065936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	145	399	0	ENST00000257430.4:c.2976dup	p.Lys993Ter	p.K993*	ENST00000257430	NM_000038.5	992	agt/agTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0065936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	110	211	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576865	7576866	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0065936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	193	475	0	ENST00000269305.4:c.980dup	p.Tyr327Ter	p.Y327*	ENST00000269305	NM_001126112.2	327	tat/taAt																																																																															
NADK	65220	MSKCC	GRCh37	1	1686068	1686068	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1158577988		P-0065936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	180	485	0	ENST00000341426.5:c.758C>T	p.Thr253Met	p.T253M	ENST00000341426	NM_023018.4	253	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821601	72821616	+	protein_altering_variant	In_Frame_Del	DEL	CCGCCGCCGCCGCCGC	CCGCCGCCGCCGCCGC	G			P-0065936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	73	444	0	ENST00000268489.5:c.10559_10574delinsC	p.Gly3520_Gly3525delinsAla	p.G3520_G3525delinsA	ENST00000268489	NM_006885.3	3520	gGCGGCGGCGGCGGCGGc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0065938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	164	373	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0065938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			58	111	299	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679748	33679748	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs541914273		P-0065938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	152	512	0	ENST00000308377.4:c.2333G>A	p.Arg778Gln	p.R778Q	ENST00000308377	NM_152270.3	778	cGa/cAa																																																																															
NBN	4683	MSKCC	GRCh37	8	90976636	90976636	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0065938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			46	235	278	0	ENST00000265433.3:c.994+2T>C		p.X332_splice	ENST00000265433	NM_002485.4	332																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41419986	41419986	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372989163		P-0065971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	86	448	0	ENST00000373198.4:c.335G>A	p.Arg112His	p.R112H	ENST00000373198	NM_133170.3	112	cGt/cAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0065971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	99	386	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856529	111856529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	88	475	0	ENST00000341259.2:c.580G>A	p.Glu194Lys	p.E194K	ENST00000341259	NM_005475.2	194	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs397516439		P-0065971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	142	465	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
ATM	472	MSKCC	GRCh37	11	108115578	108115579	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0065971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	88	296	0	ENST00000278616.4:c.727_728del	p.Leu243GlyfsTer10	p.L243Gfs*10	ENST00000278616	NM_000051.3	242	acTTtg/actg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109792	115109792	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	126	453	0	ENST00000257566.3:c.2086T>C	p.Ser696Pro	p.S696P	ENST00000257566	NM_016569.3	696	Tcc/Ccc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0065991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	214	380	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094450	27094450	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779484265		P-0065991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	30	477	1	ENST00000324856.7:c.3158G>A	p.Arg1053His	p.R1053H	ENST00000324856	NM_006015.4	1053	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216188	36216188	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs756135109		P-0065991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	190	554	0	ENST00000222270.7:c.3596G>T	p.Gly1199Val	p.G1199V	ENST00000222270	NM_014727.1	1199	gGc/gTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101401	27101402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			252	58	255	0	ENST00000324856.7:c.4689dup	p.Met1564HisfsTer8	p.M1564Hfs*8	ENST00000324856	NM_006015.4	1561	-/C																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			447	141	365	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
SUFU	51684	MSKCC	GRCh37	10	104263974	104263974	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			305	90	334	0	ENST00000369902.3:c.71del	p.Pro24ArgfsTer72	p.P24Rfs*72	ENST00000369902	NM_016169.3	22	gCc/gc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			526	160	500	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			218	23	190	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			529	90	596	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			497	138	513	3	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495715	56495715	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			425	86	445	0	ENST00000267101.3:c.3910del	p.His1304MetfsTer7	p.H1304Mfs*7	ENST00000267101	NM_001982.3	1302	gCc/gc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112884105	112884105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			292	85	215	0	ENST00000351677.2:c.40G>A	p.Val14Met	p.V14M	ENST00000351677	NM_002834.3	14	Gtg/Atg																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			480	113	397	1	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			297	84	328	2	ENST00000380152.3:c.5351del	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			634	62	435	0	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43733757	43733757	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	115	312	0	ENST00000382044.4:c.3065del	p.Asn1022MetfsTer20	p.N1022Mfs*20	ENST00000382044	NM_001141980.1	1022	aAt/at																																																																															
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1023835002		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			520	42	395	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																															
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			443	112	449	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																															
B2M	567	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	60	402	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
MAP2K1	5604	MSKCC	GRCh37	15	66727483	66727483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs727504317		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			497	111	399	0	ENST00000307102.5:c.199G>A	p.Asp67Asn	p.D67N	ENST00000307102	NM_002755.3	67	Gac/Aac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858356	9858356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			449	112	452	0	ENST00000330684.3:c.3045G>T	p.Lys1015Asn	p.K1015N	ENST00000330684	NM_001134407.1	1015	aaG/aaT																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646981	23646981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs587776408		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			545	69	444	2	ENST00000261584.4:c.886del	p.Met296Ter	p.M296*	ENST00000261584	NM_024675.3	296	Atg/tg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			668	61	493	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
CDH1	999	MSKCC	GRCh37	16	68855967	68855967	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			414	165	450	0	ENST00000261769.5:c.1779del	p.Ile594TyrfsTer19	p.I594Yfs*19	ENST00000261769	NM_004360.3	592	gCc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			464	127	424	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			515	180	590	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214594	5214594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768496731		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			477	142	502	0	ENST00000357368.4:c.4472C>T	p.Thr1491Met	p.T1491M	ENST00000357368	NM_002850.3	1491	aCg/aTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			849	127	535	1	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503775	47503775	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	433	468	1	ENST00000404338.3:c.4335del	p.Gly1446AlafsTer353	p.G1446Afs*353	ENST00000404338	NM_004491.4	1444	Ccc/cc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812260	212812260	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751175543		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			373	95	404	1	ENST00000342788.4:c.316C>T	p.Arg106Cys	p.R106C	ENST00000342788	NM_005235.2	106	Cgt/Tgt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31019143	31019144	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			488	130	382	0	ENST00000375687.4:c.742dup	p.Glu248GlyfsTer6	p.E248Gfs*6	ENST00000375687	NM_015338.5	246	-/G																																																																															
ERG	2078	MSKCC	GRCh37	21	39772519	39772519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			458	134	407	0	ENST00000288319.7:c.722C>T	p.Thr241Met	p.T241M	ENST00000288319	NM_182918.3	241	aCg/aTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41574223	41574223	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1419903766		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			577	87	543	0	ENST00000263253.7:c.6508A>G	p.Met2170Val	p.M2170V	ENST00000263253	NM_001429.3	2170	Atg/Gtg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	175	419	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
MLH1	4292	MSKCC	GRCh37	3	37045935	37045935	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs63750781		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			304	238	383	0	ENST00000231790.2:c.350C>T	p.Thr117Met	p.T117M	ENST00000231790	NM_000249.3	117	aCg/aTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			362	295	377	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165968	47165968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			569	46	440	0	ENST00000409792.3:c.158G>T	p.Arg53Leu	p.R53L	ENST00000409792	NM_014159.6	53	cGa/cTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	49	446	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916957	178916957	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200018596		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			307	80	324	0	ENST00000263967.3:c.344G>T	p.Arg115Leu	p.R115L	ENST00000263967	NM_006218.2	115	cGa/cTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			463	54	400	0	ENST00000263967.3:c.3012G>T	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			430	127	399	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467373	66467373	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			465	112	428	0	ENST00000273854.3:c.896del	p.Asn299MetfsTer123	p.N299Mfs*123	ENST00000273854	NM_004439.5	299	aAt/at																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518767	176518767	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755103491		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			482	155	481	2	ENST00000292408.4:c.685G>A	p.Ala229Thr	p.A229T	ENST00000292408	NM_213647.1	229	Gct/Act																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609902	117609902	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781588795		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			410	114	368	0	ENST00000368508.3:c.6797C>T	p.Thr2266Met	p.T2266M	ENST00000368508	NM_002944.2	2266	aCg/aTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157469779	157469779	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749077422		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			575	60	462	0	ENST00000346085.5:c.2573C>T	p.Ala858Val	p.A858V	ENST00000346085	NM_020732.3	858	gCg/gTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962914	2962914	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147823569		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	96	372	0	ENST00000396946.4:c.1994C>T	p.Ser665Leu	p.S665L	ENST00000396946	NM_032415.4	665	tCg/tTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			610	66	487	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012245	152012245	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	100	419	0	ENST00000262189.6:c.568C>T	p.Arg190Ter	p.R190*	ENST00000262189	NM_170606.2	190	Cga/Tga																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			477	114	613	3	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
ABL1	25	MSKCC	GRCh37	9	133759623	133759623	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			468	139	536	0	ENST00000318560.5:c.1950del	p.Leu651TrpfsTer43	p.L651Wfs*43	ENST00000318560	NM_005157.4	649	aCc/ac																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300040	137300040	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			387	61	356	0	ENST00000481739.1:c.331del	p.Leu111TrpfsTer57	p.L111Wfs*57	ENST00000481739	NM_002957.4	109	Ccc/cc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321355	1321355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			482	111	428	0	ENST00000381566.1:c.400G>A	p.Val134Met	p.V134M	ENST00000381566		134	Gtg/Atg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910372	29910372	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			888	141	803	0	ENST00000376809.5:c.46del	p.Ala16ProfsTer4	p.A16Pfs*4	ENST00000376809	NM_002116.7	14	tcG/tc																																																																															
CIC	23152	MSKCC	GRCh37	19	42799299	42799300	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1158987717		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	17	166	0	ENST00000575354.2:c.4790dup	p.Pro1598ThrfsTer16	p.P1598Tfs*16	ENST00000575354	NM_015125.3	1595	tcc/tCcc																																																																															
NADK	65220	MSKCC	GRCh37	1	1696761	1696761	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201229178		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			452	148	412	0	ENST00000341426.5:c.85G>A	p.Asp29Asn	p.D29N	ENST00000341426	NM_023018.4	29	Gat/Aat																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150933381	150933382	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			495	80	441	0	ENST00000271640.5:c.2849dup	p.Asp951ArgfsTer39	p.D951Rfs*39	ENST00000271640	NM_001145415.1	948	cac/caCc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711287	114711287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			299	116	341	0	ENST00000543371.1:c.302C>T	p.Pro101Leu	p.P101L	ENST00000543371	NM_001198531.1	101	cCc/cTc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741529	17741529	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781111019		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			313	134	421	0	ENST00000250003.3:c.200C>T	p.Ala67Val	p.A67V	ENST00000250003	NM_002478.4	67	gCg/gTg																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205262	61205262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			420	123	400	0	ENST00000301761.2:c.202G>A	p.Ala68Thr	p.A68T	ENST00000301761	NM_017841.2	68	Gcc/Acc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307290	118307291	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			169	35	193	0	ENST00000534358.1:c.69dup	p.Arg24AlafsTer123	p.R24Afs*123	ENST00000534358	NM_005933.3	21	-/G																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944877	31944877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			318	83	286	0	ENST00000340398.3:c.224C>T	p.Ala75Val	p.A75V	ENST00000340398	NM_001013699.2	75	gCg/gTg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856076	111856076	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757743643		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	125	447	0	ENST00000341259.2:c.127C>T	p.Arg43Cys	p.R43C	ENST00000341259	NM_005475.2	43	Cgc/Tgc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103498619	103498619	+	frameshift_variant,start_lost	Frame_Shift_Del	DEL	G	G	-			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			400	113	389	0	ENST00000355739.4:c.7del	p.Val3SerfsTer33	p.V3Sfs*33	ENST00000355739	NM_000123.3	1	atG/at																																																																															
DICER1	23405	MSKCC	GRCh37	14	95566126	95566126	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			422	39	300	1	ENST00000343455.3:c.4197del	p.Asp1400MetfsTer3	p.D1400Mfs*3	ENST00000343455	NM_177438.2	1399	aaA/aa																																																																															
MGA	23269	MSKCC	GRCh37	15	41991307	41991308	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	106	361	0	ENST00000219905.7:c.2140_2141dup	p.Leu714PhefsTer2	p.L714Ffs*2	ENST00000219905	NM_001164273.1	713	gat/gaTTt																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51503148	51503148	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs72552260		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			469	155	410	0	ENST00000260433.2:c.1369C>T	p.Arg457Ter	p.R457*	ENST00000260433		457	Cga/Tga																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349706	15349706	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767464916		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			502	144	555	0	ENST00000263377.2:c.3868C>T	p.Arg1290Cys	p.R1290C	ENST00000263377	NM_058243.2	1290	Cgc/Tgc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424760	47424760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			805	134	492	3	ENST00000404338.3:c.2834del	p.Lys945ArgfsTer3	p.K945Rfs*3	ENST00000404338	NM_004491.4	943	gAa/ga																																																																															
SRC	6714	MSKCC	GRCh37	20	36014555	36014555	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772219397		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			370	118	412	0	ENST00000358208.4:c.328C>T	p.Arg110Trp	p.R110W	ENST00000358208		110	Cgg/Tgg																																																																															
RAC2	5880	MSKCC	GRCh37	22	37622745	37622745	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138762569		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			438	110	400	0	ENST00000249071.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000249071	NM_002872.4	183	Cgg/Tgg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748151	41748151	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			352	109	378	0	ENST00000226382.2:c.618del	p.Ser207AlafsTer102	p.S207Afs*102	ENST00000226382	NM_003924.3	206	ccC/cc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356317	66356317	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs965251708		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			488	144	449	0	ENST00000273854.3:c.1180G>A	p.Ala394Thr	p.A394T	ENST00000273854	NM_004439.5	394	Gca/Aca																																																																															
TET2	54790	MSKCC	GRCh37	4	106196270	106196270	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs906127830		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			610	86	477	0	ENST00000380013.4:c.4603C>T	p.Pro1535Ser	p.P1535S	ENST00000380013	NM_001127208.2	1535	Cca/Tca																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143045834	143045834	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			413	124	393	0	ENST00000262992.4:c.1800G>C	p.Gln600His	p.Q600H	ENST00000262992	NM_001101669.1	600	caG/caC																																																																															
GAB1	2549	MSKCC	GRCh37	4	144258384	144258385	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			349	85	398	0	ENST00000262994.4:c.49_50dup	p.Glu18ArgfsTer5	p.E18Rfs*5	ENST00000262994	NM_002039.3	15	tcc/tCCcc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873742	35873742	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			467	58	345	0	ENST00000303115.3:c.698A>G	p.Asn233Ser	p.N233S	ENST00000303115	NM_002185.3	233	aAt/aGt																																																																															
APC	324	MSKCC	GRCh37	5	112173719	112173719	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs564269909		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	133	405	0	ENST00000257430.4:c.2428A>G	p.Arg810Gly	p.R810G	ENST00000257430	NM_000038.5	810	Agg/Ggg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670626	30670626	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			495	111	489	0	ENST00000376406.3:c.5894del	p.Pro1965ArgfsTer6	p.P1965Rfs*6	ENST00000376406	NM_014641.2	1965	cCg/cg																																																																															
RAC1	5879	MSKCC	GRCh37	7	6439774	6439774	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			472	132	361	0	ENST00000356142.4:c.300C>A	p.Cys100Ter	p.C100*	ENST00000356142	NM_018890.3	100	tgC/tgA																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29197635	29197635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			477	160	436	0	ENST00000240100.2:c.559G>A	p.Gly187Arg	p.G187R	ENST00000240100	NM_001394.6	187	Ggg/Agg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70982034	70982034	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1339967021		P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			447	78	466	0	ENST00000276594.2:c.62G>C	p.Ser21Thr	p.S21T	ENST00000276594	NM_024504.3	21	aGc/aCc																																																																															
TEK	7010	MSKCC	GRCh37	9	27183516	27183516	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			457	123	410	0	ENST00000380036.4:c.1090G>T	p.Gly364Cys	p.G364C	ENST00000380036	NM_000459.3	364	Ggt/Tgt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101908843	101908843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			537	31	399	0	ENST00000374994.4:c.1207G>A	p.Ala403Thr	p.A403T	ENST00000374994	NM_004612.2	403	Gca/Aca																																																																															
TSC1	7248	MSKCC	GRCh37	9	135787785	135787785	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			386	107	345	0	ENST00000298552.3:c.797C>A	p.Pro266His	p.P266H	ENST00000298552	NM_001162426.1	266	cCc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099403	157099429	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAGCAGCAACAG	CAGCAGCAGCAGCAGCAGCAGCAACAG	-	rs910569810		P-0066025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	75	435	0	ENST00000346085.5:c.360_386del	p.Gln123_Gln131del	p.Q123_Q131del	ENST00000346085	NM_020732.3	114	CAGCAGCAGCAGCAGCAGCAGCAACAG/-																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120684	115120684	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	195	394	0	ENST00000257566.3:c.322G>T	p.Glu108Ter	p.E108*	ENST00000257566	NM_016569.3	108	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0066025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	84	297	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670597	134670597	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1330628001		P-0066025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	69	381	0	ENST00000398015.3:c.508C>T	p.Arg170Trp	p.R170W	ENST00000398015	NM_004441.4	170	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112174885	112174886	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0066025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	140	343	0	ENST00000257430.4:c.3595_3596del	p.Lys1199GlufsTer8	p.K1199Efs*8	ENST00000257430	NM_000038.5	1198	tcAAag/tcag																																																																															
ATRX	546	MSKCC	GRCh37	X	76849212	76849212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	46	290	0	ENST00000373344.5:c.6064C>A	p.Leu2022Ile	p.L2022I	ENST00000373344	NM_000489.3	2022	Ctt/Att																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	97	209	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874152	155874152	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	269	342	0	ENST00000368323.3:c.379A>T	p.Thr127Ser	p.T127S	ENST00000368323	NM_006912.5	127	Aca/Tca																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16042376	16042376	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	69	227	0	ENST00000268712.3:c.1298A>G	p.Asp433Gly	p.D433G	ENST00000268712	NM_006311.3	433	gAt/gGt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120261	70120285	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCTTCAACCTCCCACACTACAGC	CCCCTTCAACCTCCCACACTACAGC	-			P-0066025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	244	396	0	ENST00000245479.2:c.1266_1290del	p.Phe423ProfsTer39	p.F423Pfs*39	ENST00000245479	NM_000346.3	421	agCCCCTTCAACCTCCCACACTACAGC/ag																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022795	12022795	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	91	493	0	ENST00000396373.4:c.903del	p.Lys302SerfsTer14	p.K302Sfs*14	ENST00000396373	NM_001987.4	301	Ggg/gg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0066038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	227	232	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028689	12028689	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0066038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	31	291	0	ENST00000353533.5:c.891+1G>A		p.X297_splice	ENST00000353533	NM_003010.3	297																																																																																
TP53	7157	MSKCC	GRCh37	17	7576911	7576923	+	frameshift_variant	Frame_Shift_Del	DEL	GTGTTGTTGGGCA	GTGTTGTTGGGCA	-			P-0066038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	71	415	0	ENST00000269305.4:c.923_935del	p.Leu308ProfsTer33	p.L308Pfs*33	ENST00000269305	NM_001126112.2	308	cTGCCCAACAACACc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0066044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	144	380	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0066044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	136	592	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120013	70120013	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	72	623	0	ENST00000245479.2:c.1015C>T	p.Gln339Ter	p.Q339*	ENST00000245479	NM_000346.3	339	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175355	+	frameshift_variant	Frame_Shift_Del	DEL	TTTTC	TTTTC	-			P-0066044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	169	577	0	ENST00000257430.4:c.4062_4066del	p.Ser1355ArgfsTer18	p.S1355Rfs*18	ENST00000257430	NM_000038.5	1354	TTTTCt/t																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982134	93982134	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773950345		P-0066044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	53	523	0	ENST00000369303.4:c.1331C>T	p.Ser444Leu	p.S444L	ENST00000369303	NM_004440.3	444	tCg/tTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114905823	114905824	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0066044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	98	520	0	ENST00000543371.1:c.845_846dup	p.Ala283GlnfsTer3	p.A283Qfs*3	ENST00000543371	NM_001198531.1	281	ccc/ccCAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120450	70120451	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0066044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	110	671	0	ENST00000245479.2:c.1452_1453del	p.Val486ProfsTer91	p.V486Pfs*91	ENST00000245479	NM_000346.3	484	tcTGgg/tcgg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265316	46265316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	1421	582	0	ENST00000371998.3:c.2186C>T	p.Pro729Leu	p.P729L	ENST00000371998		729	cCt/cTt																																																																															
ATR	545	MSKCC	GRCh37	3	142281621	142281621	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763494560		P-0066044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	64	442	0	ENST00000350721.4:c.623C>T	p.Thr208Ile	p.T208I	ENST00000350721	NM_001184.3	208	aCt/aTt																																																																															
APC	324	MSKCC	GRCh37	5	112175101	112175102	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTTCAAG			P-0066044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	134	517	0	ENST00000257430.4:c.3811_3818dup	p.Arg1273SerfsTer18	p.R1273Sfs*18	ENST00000257430	NM_000038.5	1270	-/TTTTCAAG																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0066059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	317	455	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
CIC	23152	MSKCC	GRCh37	19	42791719	42791719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	143	628	0	ENST00000575354.2:c.605G>A	p.Arg202Gln	p.R202Q	ENST00000575354	NM_015125.3	202	cGg/cAg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212652804	212652804	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138433638		P-0066059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	144	414	0	ENST00000342788.4:c.502C>T	p.Arg168Trp	p.R168W	ENST00000342788	NM_005235.2	168	Cgg/Tgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912159	114912159	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	222	406	0	ENST00000543371.1:c.1229A>G	p.His410Arg	p.H410R	ENST00000543371	NM_001198531.1	410	cAt/cGt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2218099	2218100	+	missense_variant	Missense_Mutation	DNP	AG	AG	TT			P-0066059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	126	601	0	ENST00000326181.6:c.161_162delinsTT	p.Lys54Ile	p.K54I	ENST00000326181	NM_032271.2	54	aAG/aTT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578223	7578236	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTCATCCAAATA	CTGTCATCCAAATA	-			P-0066059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	322	572	0	ENST00000269305.4:c.613_626del	p.Tyr205LysfsTer6	p.Y205Kfs*6	ENST00000269305	NM_001126112.2	205	TATTTGGATGACAGa/a																																																																															
ABL1	25	MSKCC	GRCh37	9	133760994	133760994	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	125	500	0	ENST00000318560.5:c.3317G>T	p.Ser1106Ile	p.S1106I	ENST00000318560	NM_005157.4	1106	aGt/aTt																																																																															
NUP93	9688	MSKCC	GRCh37	16	56792489	56792490	+	missense_variant	Missense_Mutation	DNP	CA	CA	TT			P-0066059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			722	126	452	2	ENST00000308159.5:c.219_220delinsTT	p.Ile74Phe	p.I74F	ENST00000308159	NM_014669.4	73	caCAtc/caTTtc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8317944	8317944	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0066059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	43	457	0	ENST00000356435.5:c.5671-2A>T		p.X1891_splice	ENST00000356435		1891																																																																																
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0066073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	31	407	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100948	41100948	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	216	455	0	ENST00000373198.4:c.1408C>T	p.Arg470Ter	p.R470*	ENST00000373198	NM_133170.3	470	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C	rs786201057		P-0066073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	25	465	0	ENST00000269305.4:c.374C>G	p.Thr125Arg	p.T125R	ENST00000269305	NM_001126112.2	125	aCg/aGg																																																																															
APC	324	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	214	556	0	ENST00000257430.4:c.4364del	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0066073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			62	24	343	1	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925316	114925317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769592153		P-0066073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	223	375	12	ENST00000543371.1:c.1403dup	p.Cys469ValfsTer8	p.C469Vfs*8	ENST00000543371	NM_001198531.1	465	aga/agAa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492817	56492817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	194	494	0	ENST00000407977.2:c.122C>T	p.Ser41Leu	p.S41L	ENST00000407977		41	tCa/tTa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231774	36231774	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	39	549	0	ENST00000300305.3:c.610C>T	p.Arg204Ter	p.R204*	ENST00000300305		204	Cga/Tga																																																																															
TET2	54790	MSKCC	GRCh37	4	106158414	106158415	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0066073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	37	418	0	ENST00000380013.4:c.3317_3318del	p.Glu1106ValfsTer23	p.E1106Vfs*23	ENST00000380013	NM_001127208.2	1105	atAGag/atag																																																																															
APC	324	MSKCC	GRCh37	5	112173283	112173284	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0066073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	28	432	0	ENST00000257430.4:c.1993_1994del	p.Leu665IlefsTer8	p.L665Ifs*8	ENST00000257430	NM_000038.5	664	acTTta/acta																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43766925	43766925	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	46	407	0	ENST00000382044.4:c.1126C>T	p.Arg376Ter	p.R376*	ENST00000382044	NM_001141980.1	376	Cga/Tga																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934069	39934070	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0066073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	178	498	0	ENST00000378444.4:c.529_530del	p.Ser177ProfsTer8	p.S177Pfs*8	ENST00000378444	NM_001123385.1	177	AGc/c																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0066073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			94	75	295	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983037	201983037	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868080326		P-0066073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	145	523	0	ENST00000359651.3:c.886G>A	p.Glu296Lys	p.E296K	ENST00000359651		296	Gag/Aag																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910786	29910788	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0066073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	47	345	0	ENST00000376809.5:c.328_330del	p.Asn110del	p.N110del	ENST00000376809	NM_002116.7	109	tACAac/tac																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324102	31324102	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs41559014		P-0066073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	21	333	0	ENST00000412585.2:c.461T>C	p.Leu154Pro	p.L154P	ENST00000412585	NM_005514.6	154	cTg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0066116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	268	496	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0066116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	82	407	3	ENST00000257430.4:c.3919dup	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112175261	112175261	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	98	439	0	ENST00000257430.4:c.3971del	p.Pro1324GlnfsTer91	p.P1324Qfs*91	ENST00000257430	NM_000038.5	1324	Cca/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	72	307	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920436	114920436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	182	343	0	ENST00000543371.1:c.1377G>T	p.Trp459Cys	p.W459C	ENST00000543371	NM_001198531.1	459	tgG/tgT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	79	306	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2115581	2115581	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45471596		P-0066119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	146	370	0	ENST00000219476.3:c.1661C>T	p.Ser554Leu	p.S554L	ENST00000219476	NM_000548.3	554	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0066119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	110	386	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119857	70119857	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0066119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	108	418	0	ENST00000245479.2:c.859G>T	p.Glu287Ter	p.E287*	ENST00000245479	NM_000346.3	287	Gag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	92	333	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945780	17945780	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1009464631		P-0066119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	32	515	0	ENST00000458235.1:c.2080G>A	p.Glu694Lys	p.E694K	ENST00000458235	NM_000215.3	694	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0066119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	235	418	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508614	106508614	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1377001952		P-0066119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	104	376	0	ENST00000359195.3:c.608C>T	p.Thr203Met	p.T203M	ENST00000359195	NM_002649.2	203	aCg/aTg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937947	36937948	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0066119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	100	541	0	ENST00000361632.4:c.888dup	p.Leu297AlafsTer116	p.L297Afs*116	ENST00000361632		296	-/G																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841283	15841283	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	165	312	0	ENST00000307771.7:c.1367A>G	p.Gln456Arg	p.Q456R	ENST00000307771	NM_005089.3	456	cAa/cGa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412637	63412637	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779222316		P-0066144-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	133	579	1	ENST00000330258.3:c.530G>A	p.Arg177His	p.R177H	ENST00000330258	NM_152424.3	177	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591885	48591885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066144-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	134	599	0	ENST00000342988.3:c.1048G>T	p.Val350Phe	p.V350F	ENST00000342988	NM_005359.5	350	Gtt/Ttt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0066144-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	155	516	0	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7590694	7590694	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0066144-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	179	583	0	ENST00000269305.4:c.-29+1G>T		p.X10_splice	ENST00000269305	NM_001126112.2	10																																																																																
PMS1	5378	MSKCC	GRCh37	2	190708784	190708784	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066144-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	80	405	0	ENST00000441310.2:c.677A>G	p.Gln226Arg	p.Q226R	ENST00000441310	NM_000534.4	226	cAg/cGg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6035257	6035257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066144-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	162	660	0	ENST00000265849.7:c.811G>A	p.Gly271Ser	p.G271S	ENST00000265849	NM_000535.5	271	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131691026		P-0066203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	33	820	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0066203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	9	184	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0066203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	10	134	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022535	12022535	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs724159947		P-0066203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	26	871	0	ENST00000396373.4:c.641C>T	p.Pro214Leu	p.P214L	ENST00000396373	NM_001987.4	214	cCg/cTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247295	153247295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	23	567	0	ENST00000281708.4:c.1507G>A	p.Ala503Thr	p.A503T	ENST00000281708	NM_033632.3	503	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112174587	112174587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	22	421	0	ENST00000257430.4:c.3298del	p.Ser1100LeufsTer26	p.S1100Lfs*26	ENST00000257430	NM_000038.5	1099	gTt/gt																																																																															
ATM	472	MSKCC	GRCh37	11	108218045	108218045	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587782451		P-0066214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			23	82	355	0	ENST00000278616.4:c.8624A>G	p.Asn2875Ser	p.N2875S	ENST00000278616	NM_000051.3	2875	aAt/aGt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910883	114910883	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1477809102		P-0066214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	67	393	1	ENST00000543371.1:c.1001+1G>A		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																																
ROS1	6098	MSKCC	GRCh37	6	117700262	117700262	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			18	77	341	0	ENST00000368508.3:c.2557C>G	p.Gln853Glu	p.Q853E	ENST00000368508	NM_002944.2	853	Caa/Gaa																																																																															
APC	324	MSKCC	GRCh37	5	112174886	112174886	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0066214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			37	89	442	0	ENST00000257430.4:c.3595A>T	p.Lys1199Ter	p.K1199*	ENST00000257430	NM_000038.5	1199	Aag/Tag																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919700	96919700	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	51	409	0	ENST00000258439.3:c.563T>A	p.Ile188Asn	p.I188N	ENST00000258439	NM_001193304.2	188	aTc/aAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831095	72831095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	33	458	0	ENST00000268489.5:c.5486C>T	p.Pro1829Leu	p.P1829L	ENST00000268489	NM_006885.3	1829	cCa/cTa																																																																															
RET	5979	MSKCC	GRCh37	10	43609084	43609084	+	protein_altering_variant	In_Frame_Ins	INS	G	G	CCTA			P-0066214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			94	57	660	0	ENST00000355710.3:c.1840delinsCCTA	p.Glu614delinsProLys	p.E614delinsPK	ENST00000355710	NM_020975.4	614	Gag/CCTAag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0066218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			32	61	285	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786202962		P-0066218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			44	249	590	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	28	427	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0066218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			58	76	307	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
XPO1	7514	MSKCC	GRCh37	2	61720070	61720070	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	23	382	0	ENST00000401558.2:c.1364A>C	p.Lys455Thr	p.K455T	ENST00000401558	NM_003400.3	455	aAg/aCg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72076781	72076781	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767198961		P-0066218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	64	463	1	ENST00000357731.5:c.716G>A	p.Arg239His	p.R239H	ENST00000357731	NM_173808.2	239	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274290	5274290	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368676720		P-0066218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	126	508	1	ENST00000357368.4:c.157G>A	p.Val53Met	p.V53M	ENST00000357368	NM_002850.3	53	Gtg/Atg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148511145	148511145	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	86	508	0	ENST00000320356.2:c.1757A>T	p.Asp586Val	p.D586V	ENST00000320356	NM_004456.4	586	gAc/gTc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88672062	88672062	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			12	13	112	0	ENST00000372037.3:c.596T>G	p.Phe199Cys	p.F199C	ENST00000372037	NM_004329.2	199	tTt/tGt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2213852	2213852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	83	599	0	ENST00000398665.3:c.1664G>A	p.Gly555Asp	p.G555D	ENST00000398665	NM_032482.2	555	gGt/gAt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592124	67592124	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	47	407	0	ENST00000274335.5:c.1940T>C	p.Leu647Pro	p.L647P	ENST00000274335		647	cTt/cCt																																																																															
MED12	9968	MSKCC	GRCh37	X	70360583	70360583	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	126	647	0	ENST00000374080.3:c.6143T>C	p.Leu2048Pro	p.L2048P	ENST00000374080		2048	cTa/cCa																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598933	28598933	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	103	645	0	ENST00000253063.3:c.493T>G	p.Leu165Val	p.L165V	ENST00000253063	NM_031459.4	165	Ttg/Gtg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857876	9857876	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	66	589	0	ENST00000330684.3:c.3525A>C	p.Glu1175Asp	p.E1175D	ENST00000330684	NM_001134407.1	1175	gaA/gaC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874270	151874271	+	missense_variant	Missense_Mutation	DNP	GA	GA	AC			P-0066218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	30	455	1	ENST00000262189.6:c.8267_8268delinsGT	p.Ile2756Ser	p.I2756S	ENST00000262189	NM_170606.2	2756	aTC/aGT																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	107	324	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	63	354	4	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276316	15276316	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372834264		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	55	317	0	ENST00000263388.2:c.5678G>A	p.Arg1893Gln	p.R1893Q	ENST00000263388	NM_000435.2	1893	cGa/cAa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	139	437	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259092	89259092	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	58	276	0	ENST00000336596.2:c.236A>C	p.Asn79Thr	p.N79T	ENST00000336596	NM_005233.5	79	aAc/aCc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	39	279	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			724	54	358	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740376	145740376	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35407712		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			709	51	390	0	ENST00000428558.2:c.1564C>T	p.Arg522Cys	p.R522C	ENST00000428558	NM_004260.3	522	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	19	94	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542109	187542110	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			727	59	350	2	ENST00000441802.2:c.5630dup	p.Val1878CysfsTer8	p.V1878Cfs*8	ENST00000441802	NM_005245.3	1877	cct/ccCt																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	37	249	2	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	55	363	2	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932085	39932085	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			688	52	396	1	ENST00000378444.4:c.2514del	p.Lys839SerfsTer17	p.K839Sfs*17	ENST00000378444	NM_001123385.1	838	ccC/cc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721164	176721165	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	45	331	0	ENST00000439151.2:c.6801dup	p.Ala2268SerfsTer13	p.A2268Sfs*13	ENST00000439151	NM_022455.4	2265	-/A																																																																															
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			714	78	313	0	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	55	338	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638917	176638917	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749199217		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			748	64	326	0	ENST00000439151.2:c.3517C>T	p.Arg1173Cys	p.R1173C	ENST00000439151	NM_022455.4	1173	Cgc/Tgc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370958	55370958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	31	294	2	ENST00000297316.4:c.260C>T	p.Ala87Val	p.A87V	ENST00000297316	NM_022454.3	87	gCg/gTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15935669	15935669	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	65	342	0	ENST00000268712.3:c.7264C>T	p.Arg2422Ter	p.R2422*	ENST00000268712	NM_006311.3	2422	Cga/Tga																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138382756	138382756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	43	241	1	ENST00000289153.2:c.2788del	p.Thr930LeufsTer62	p.T930Lfs*62	ENST00000289153	NM_006219.2	930	Act/ct																																																																															
MED12	9968	MSKCC	GRCh37	X	70360612	70360617	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-	rs753370104		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			783	52	384	0	ENST00000374080.3:c.6183_6188del	p.Gln2075_Gln2076del	p.Q2075_Q2076del	ENST00000374080		2058	CAGCAA/-																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030224	180030224	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761089407		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	65	352	0	ENST00000261937.6:c.4060C>T	p.Arg1354Cys	p.R1354C	ENST00000261937	NM_182925.4	1354	Cgc/Tgc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962888	2962888	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1016457945		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	45	329	0	ENST00000396946.4:c.2020G>A	p.Asp674Asn	p.D674N	ENST00000396946	NM_032415.4	674	Gac/Aac																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	112	440	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	90	210	0	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865761	57865761	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	55	389	0	ENST00000228682.2:c.3243del	p.Asn1082ThrfsTer7	p.N1082Tfs*7	ENST00000228682	NM_005269.2	1080	Ccc/cc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7982767	7982767	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	55	349	0	ENST00000319144.4:c.1018del	p.Leu340SerfsTer12	p.L340Sfs*12	ENST00000319144	NM_001139.2	340	Ctc/tc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214806	36214806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	51	257	0	ENST00000222270.7:c.3232C>T	p.Arg1078Cys	p.R1078C	ENST00000222270	NM_014727.1	1078	Cgc/Tgc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286255	66286255	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	40	260	1	ENST00000273854.3:c.1431del	p.Ile480LeufsTer21	p.I480Lfs*21	ENST00000273854	NM_004439.5	477	aaA/aa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244440	41244440	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs80357841		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	56	300	0	ENST00000357654.3:c.3108del	p.Phe1036LeufsTer12	p.F1036Lfs*12	ENST00000357654	NM_007294.3	1036	ttT/tt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610154	10610154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	57	351	0	ENST00000171111.5:c.556G>A	p.Gly186Ser	p.G186S	ENST00000171111	NM_203500.1	186	Ggc/Agc																																																																															
KIT	3815	MSKCC	GRCh37	4	55564503	55564503	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1044091916		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	45	256	0	ENST00000288135.5:c.391G>A	p.Asp131Asn	p.D131N	ENST00000288135	NM_000222.2	131	Gac/Aac																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31493322	31493322	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	41	267	0	ENST00000344624.3:c.1834del	p.Leu612Ter	p.L612*	ENST00000344624		612	Ctg/tg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817720	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	50	274	0	ENST00000262367.5:c.3250dup	p.Ile1084AsnfsTer3	p.I1084Nfs*3	ENST00000262367	NM_004380.2	1084	atc/aAtc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524364	176524364	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759042869		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	40	331	0	ENST00000292408.4:c.2225C>T	p.Ala742Val	p.A742V	ENST00000292408	NM_213647.1	742	gCg/gTg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112891121	112891121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507521		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			831	66	310	0	ENST00000351677.2:c.455G>A	p.Arg152His	p.R152H	ENST00000351677	NM_002834.3	152	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223996	36223997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747928028		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	56	370	0	ENST00000222270.7:c.6552dup	p.Lys2185GlnfsTer25	p.K2185Qfs*25	ENST00000222270	NM_014727.1	2182	-/C																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434973	110434973	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	56	398	0	ENST00000375856.3:c.3428del	p.Gly1143AlafsTer116	p.G1143Afs*116	ENST00000375856	NM_003749.2	1143	gGc/gc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289907	15289907	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1265324934		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			749	70	461	0	ENST00000263388.2:c.3647C>T	p.Ala1216Val	p.A1216V	ENST00000263388	NM_000435.2	1216	gCg/gTg																																																																															
BCL6	604	MSKCC	GRCh37	3	187446988	187446988	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139744042		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			705	78	379	0	ENST00000232014.4:c.1205G>A	p.Arg402His	p.R402H	ENST00000232014	NM_001130845.1	402	cGc/cAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32890650	32890650	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80358762		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	52	202	0	ENST00000380152.3:c.53G>A	p.Arg18His	p.R18H	ENST00000380152		18	cGc/cAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878445	151878445	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748645400		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			737	74	326	0	ENST00000262189.6:c.6500G>A	p.Arg2167Gln	p.R2167Q	ENST00000262189	NM_170606.2	2167	cGg/cAg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185181358	185181359	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	32	230	0	ENST00000265026.3:c.1305dup	p.His436ThrfsTer3	p.H436Tfs*3	ENST00000265026	NM_004721.4	433	-/A																																																																															
RET	5979	MSKCC	GRCh37	10	43620377	43620377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	60	293	0	ENST00000355710.3:c.2986C>T	p.Pro996Ser	p.P996S	ENST00000355710	NM_020975.4	996	Ccg/Tcg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739435	145739440	+	inframe_deletion	In_Frame_Del	DEL	TGTGGC	TGTGGC	-	rs781471399		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	76	374	0	ENST00000428558.2:c.1930_1935del	p.Ala644_Thr645del	p.A644_T645del	ENST00000428558	NM_004260.3	644	GCCACA/-																																																																															
ALK	238	MSKCC	GRCh37	2	29416542	29416542	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201759867		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	54	423	0	ENST00000389048.3:c.4411G>A	p.Val1471Met	p.V1471M	ENST00000389048	NM_004304.4	1471	Gtg/Atg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	41	280	3	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662784	117662784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	56	279	0	ENST00000368508.3:c.4681G>A	p.Val1561Met	p.V1561M	ENST00000368508	NM_002944.2	1561	Gtg/Atg																																																																															
ATM	472	MSKCC	GRCh37	11	108142103	108142103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	52	267	0	ENST00000278616.4:c.3047G>A	p.Gly1016Glu	p.G1016E	ENST00000278616	NM_000051.3	1016	gGa/gAa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775649	9775649	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	75	330	0	ENST00000377346.4:c.195del	p.Glu66ArgfsTer44	p.E66Rfs*44	ENST00000377346	NM_005026.3	64	ggC/gg																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402531	20402531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	27	302	0	ENST00000346618.3:c.68C>T	p.Ala23Val	p.A23V	ENST00000346618	NM_001949.4	23	gCt/gTt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28609713	28609713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	70	302	0	ENST00000241453.7:c.1516G>A	p.Ala506Thr	p.A506T	ENST00000241453	NM_004119.2	506	Gcc/Acc																																																																															
SMO	6608	MSKCC	GRCh37	7	128850347	128850347	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	47	306	0	ENST00000249373.3:c.1610G>A	p.Trp537Ter	p.W537*	ENST00000249373	NM_005631.4	537	tGg/tAg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437750	52437750	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs946145283		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	56	326	0	ENST00000460680.1:c.1411G>A	p.Ala471Thr	p.A471T	ENST00000460680	NM_004656.3	471	Gct/Act																																																																															
FANCA	2175	MSKCC	GRCh37	16	89849283	89849283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	37	233	0	ENST00000389301.3:c.1610C>T	p.Ala537Val	p.A537V	ENST00000389301	NM_000135.2	537	gCt/gTt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549243	21549243	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	63	417	0	ENST00000382592.4:c.3033G>A	p.Trp1011Ter	p.W1011*	ENST00000382592	NM_014572.2	1011	tgG/tgA																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860096	57860096	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	58	334	0	ENST00000228682.2:c.836T>G	p.Leu279Arg	p.L279R	ENST00000228682	NM_005269.2	279	cTg/cGg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11169518	11169518	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	52	274	0	ENST00000344626.4:c.4588A>G	p.Met1530Val	p.M1530V	ENST00000344626	NM_003072.3	1530	Atg/Gtg																																																																															
CD79B	974	MSKCC	GRCh37	17	62007454	62007454	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	59	364	0	ENST00000392795.3:c.413G>C	p.Gly138Ala	p.G138A	ENST00000392795	NM_001039933.1	138	gGc/gCc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437938	110437938	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	19	185	0	ENST00000375856.3:c.463C>G	p.Pro155Ala	p.P155A	ENST00000375856	NM_003749.2	155	Ccc/Gcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214727	36214728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	37	328	0	ENST00000222270.7:c.3159dup	p.Pro1054AlafsTer34	p.P1054Afs*34	ENST00000222270	NM_014727.1	1051	-/G																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446275	29446275	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	48	332	1	ENST00000544604.2:c.2111del	p.Gly704AlafsTer69	p.G704Afs*69	ENST00000544604	NM_001206998.1	702	aaG/aa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782056	9782056	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	40	378	1	ENST00000377346.4:c.2079G>T	p.Lys693Asn	p.K693N	ENST00000377346	NM_005026.3	693	aaG/aaT																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259532	16259532	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	52	362	0	ENST00000375759.3:c.6797A>G	p.Asp2266Gly	p.D2266G	ENST00000375759	NM_015001.2	2266	gAt/gGt																																																																															
ALK	238	MSKCC	GRCh37	2	30142885	30142886	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	57	382	0	ENST00000389048.3:c.640dup	p.Arg214ProfsTer12	p.R214Pfs*12	ENST00000389048	NM_004304.4	214	cgc/cCgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106931	27106931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			740	61	395	0	ENST00000324856.7:c.6542C>T	p.Ala2181Val	p.A2181V	ENST00000324856	NM_006015.4	2181	gCa/gTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101011	41101011	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	50	374	0	ENST00000373198.4:c.1345C>A	p.Leu449Met	p.L449M	ENST00000373198	NM_133170.3	449	Ctg/Atg																																																																															
TET1	80312	MSKCC	GRCh37	10	70451161	70451161	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	42	342	1	ENST00000373644.4:c.6005del	p.Leu2002TrpfsTer18	p.L2002Wfs*18	ENST00000373644	NM_030625.2	2001	Ttt/tt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096720	178096720	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	47	228	0	ENST00000397062.3:c.611del	p.Asn204MetfsTer17	p.N204Mfs*17	ENST00000397062	NM_006164.4	204	aAt/at																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206650057	206650057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	51	306	0	ENST00000367120.3:c.577C>T	p.Pro193Ser	p.P193S	ENST00000367120	NM_014002.3	193	Ccc/Tcc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	339581	339581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	43	257	0	ENST00000262320.3:c.2321G>A	p.Gly774Asp	p.G774D	ENST00000262320	NM_003502.3	774	gGc/gAc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326904	62326905	+	frameshift_variant,NMD_transcript_variant	Frame_Shift_Ins	INS	-	-	TG			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	50	381	0	ENST00000482936.1:c.3730_3731dup	p.Gln1245AlafsTer360	p.Q1245Afs*360	ENST00000482936		1241	-/TG																																																																															
MGA	23269	MSKCC	GRCh37	15	41988317	41988317	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs548777775		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	40	285	0	ENST00000219905.7:c.1109C>T	p.Pro370Leu	p.P370L	ENST00000219905	NM_001164273.1	370	cCg/cTg																																																																															
RRAS	6237	MSKCC	GRCh37	19	50139103	50139111	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GGGGGACCT	GGGGGACCT	-			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	35	143	0	ENST00000246792.3:c.454-2_460del		p.X152_splice	ENST00000246792	NM_006270.3	152																																																																																
HIST1H1C	3006	MSKCC	GRCh37	6	26056091	26056091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200043061		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	59	365	1	ENST00000343677.2:c.566C>T	p.Ala189Val	p.A189V	ENST00000343677	NM_005319.3	189	gCt/gTt																																																																															
ERF	2077	MSKCC	GRCh37	19	42753822	42753822	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	61	432	0	ENST00000222329.4:c.442A>G	p.Thr148Ala	p.T148A	ENST00000222329	NM_006494.2	148	Acg/Gcg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295686	1295686	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	68	433	0				ENST00000310581	NM_198253.2																																																																																	
INSR	3643	MSKCC	GRCh37	19	7267542	7267542	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750269551		P-0066239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	53	286	0	ENST00000302850.5:c.466G>A	p.Ala156Thr	p.A156T	ENST00000302850	NM_000208.2	156	Gcc/Acc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589830	69589830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	43	830	0	ENST00000168712.1:c.23C>T	p.Ala8Val	p.A8V	ENST00000168712	NM_002007.2	8	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs137854575		P-0066240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	123	468	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911645	114911645	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0066240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	199	355	0	ENST00000543371.1:c.1161+2T>C		p.X387_splice	ENST00000543371	NM_001198531.1	387																																																																																
TBX3	6926	MSKCC	GRCh37	12	115109663	115109663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	85	486	0	ENST00000257566.3:c.2215C>T	p.Arg739Cys	p.R739C	ENST00000257566	NM_016569.3	739	Cgc/Tgc																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47602388	47602388	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	91	356	0	ENST00000263735.4:c.441A>C	p.Glu147Asp	p.E147D	ENST00000263735	NM_002354.2	147	gaA/gaC																																																																															
APC	324	MSKCC	GRCh37	5	112175240	112175240	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	183	528	0	ENST00000257430.4:c.3949del	p.Glu1317LysfsTer4	p.E1317Kfs*4	ENST00000257430	NM_000038.5	1317	Gaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0066281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	227	377	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274877	41274877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	127	385	0	ENST00000349496.5:c.1127G>A	p.Arg376His	p.R376H	ENST00000349496	NM_001904.3	376	cGt/cAt																																																																															
ALK	238	MSKCC	GRCh37	2	29416698	29416698	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56181542		P-0066281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	117	429	0	ENST00000389048.3:c.4255G>A	p.Glu1419Lys	p.E1419K	ENST00000389048	NM_004304.4	1419	Gag/Aag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26029193	26029193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	125	351	0	ENST00000435504.4:c.157C>T	p.Leu53Phe	p.L53F	ENST00000435504		53	Ctt/Ttt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	179	281	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114917829	114917829	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0066281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	156	277	0	ENST00000543371.1:c.1318+1G>T		p.X440_splice	ENST00000543371	NM_001198531.1	440																																																																																
TP53BP1	7158	MSKCC	GRCh37	15	43705439	43705439	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	275	424	0	ENST00000382044.4:c.5183del	p.Pro1728LeufsTer82	p.P1728Lfs*82	ENST00000382044	NM_001141980.1	1728	cCt/ct																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0066288-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			318	257	643	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78704367	78704367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780768526		P-0066288-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			274	142	561	0	ENST00000306801.3:c.515C>T	p.Thr172Met	p.T172M	ENST00000306801	NM_020761.2	172	aCg/aTg																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045648	26045648	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066288-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			422	118	627	0	ENST00000540144.1:c.10A>G	p.Thr4Ala	p.T4A	ENST00000540144	NM_003531.2	4	Acg/Gcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131691026		P-0066347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	398	536	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0066347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	128	436	0	ENST00000257430.4:c.4192_4193del	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982338	201982339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0066347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	239	525	0	ENST00000359651.3:c.719_720dup	p.Lys241ProfsTer14	p.K241Pfs*14	ENST00000359651		239	-/CC																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780232	9780232	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761356083		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	149	499	0	ENST00000377346.4:c.1402G>A	p.Ala468Thr	p.A468T	ENST00000377346	NM_005026.3	468	Gcc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			364	211	509	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			304	158	404	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	189	396	3	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163318754	163318755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			293	75	333	0	ENST00000271452.3:c.1150dup	p.Arg384LysfsTer6	p.R384Kfs*6	ENST00000271452	NM_145697.2	382	gaa/gAaa																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649922	88649922	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			89	67	227	0	ENST00000372037.3:c.176del	p.Leu59Ter	p.L59*	ENST00000372037	NM_004329.2	57	ccT/cc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88659631	88659632	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			214	98	325	0	ENST00000372037.3:c.419dup	p.Val141CysfsTer8	p.V141Cfs*8	ENST00000372037	NM_004329.2	138	-/C																																																																															
CCND1	595	MSKCC	GRCh37	11	69466021	69466021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			318	183	514	0	ENST00000227507.2:c.859C>T	p.Pro287Ser	p.P287S	ENST00000227507	NM_053056.2	287	Ccc/Tcc																																																																															
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			113	49	217	0	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870846	12870846	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	155	399	0	ENST00000228872.4:c.73A>T	p.Lys25Ter	p.K25*	ENST00000228872	NM_004064.3	25	Aag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			332	174	565	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			279	76	343	0	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993737	72993737	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776936617		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			386	174	565	1	ENST00000268489.5:c.308G>A	p.Arg103His	p.R103H	ENST00000268489	NM_006885.3	103	cGc/cAc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979514	7979514	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141010860		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			268	147	323	0	ENST00000319144.4:c.1511C>T	p.Ala504Val	p.A504V	ENST00000319144	NM_001139.2	504	gCg/gTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883773	37883774	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs766671083		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	171	502	0	ENST00000269571.5:c.3391dup	p.Leu1131ProfsTer8	p.L1131Pfs*8	ENST00000269571		1129	gcc/gCcc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			208	346	605	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			323	198	508	1	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78867522	78867522	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770546124		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			297	220	448	2	ENST00000306801.3:c.2258C>T	p.Ala753Val	p.A753V	ENST00000306801	NM_020761.2	753	gCg/gTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212149	5212149	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1377011238		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			310	161	502	0	ENST00000357368.4:c.4882C>T	p.Arg1628Cys	p.R1628C	ENST00000357368	NM_002850.3	1628	Cgc/Tgc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291061	10291061	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377146699		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			548	302	751	0	ENST00000340748.4:c.410C>T	p.Thr137Met	p.T137M	ENST00000340748		137	aCg/aTg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031524	11031524	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754546102		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			342	192	554	0	ENST00000327064.4:c.1439C>T	p.Thr480Met	p.T480M	ENST00000327064	NM_199141.1	480	aCg/aTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298032	15298032	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371176740		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			249	152	485	0	ENST00000263388.2:c.1724C>T	p.Thr575Met	p.T575M	ENST00000263388	NM_000435.2	575	aCg/aTg																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792423	33792423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			235	140	365	0	ENST00000498907.2:c.898C>T	p.Arg300Cys	p.R300C	ENST00000498907	NM_004364.3	300	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210868	36210868	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376781845		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	170	548	0	ENST00000222270.7:c.619C>T	p.Arg207Trp	p.R207W	ENST00000222270	NM_014727.1	207	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211899	36211899	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			327	132	422	2	ENST00000222270.7:c.1656del	p.Lys553AsnfsTer52	p.K553Nfs*52	ENST00000222270	NM_014727.1	550	gaC/ga																																																																															
BBC3	27113	MSKCC	GRCh37	19	47725130	47725130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			400	66	461	0	ENST00000449228.1:c.614C>A	p.Pro205His	p.P205H	ENST00000449228	NM_001127240.2	205	cCt/cAt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182508	99182508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	151	392	1	ENST00000074304.5:c.2311C>T	p.Arg771Trp	p.R771W	ENST00000074304	NM_001134224.1	771	Cgg/Tgg																																																																															
CASP8	841	MSKCC	GRCh37	2	202150022	202150022	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			262	159	414	0	ENST00000358485.4:c.1463T>C	p.Leu488Pro	p.L488P	ENST00000358485	NM_001080125.1	488	cTg/cCg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			353	191	488	0	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			383	104	490	3	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			161	227	425	7	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670843	134670843	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			258	125	435	0	ENST00000398015.3:c.754C>T	p.Arg252Ter	p.R252*	ENST00000398015	NM_004441.4	252	Cga/Tga																																																																															
ATR	545	MSKCC	GRCh37	3	142266651	142266651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			177	71	389	0	ENST00000350721.4:c.3273del	p.Phe1091LeufsTer28	p.F1091Lfs*28	ENST00000350721	NM_001184.3	1091	ttT/tt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557909	187557909	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs564430066		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	212	453	0	ENST00000441802.2:c.3802C>T	p.Arg1268Trp	p.R1268W	ENST00000441802	NM_005245.3	1268	Cgg/Tgg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522532	67522532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767837787		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			245	123	317	0	ENST00000274335.5:c.29C>T	p.Ala10Val	p.A10V	ENST00000274335		10	gCg/gTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			93	187	280	0	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112174604	112174604	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768454793		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			212	127	435	0	ENST00000257430.4:c.3313C>T	p.Arg1105Trp	p.R1105W	ENST00000257430	NM_000038.5	1105	Cgg/Tgg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149504305	149504305	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780819031		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			192	100	397	0	ENST00000261799.4:c.1897G>A	p.Val633Ile	p.V633I	ENST00000261799	NM_002609.3	633	Gtc/Atc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32191658	32191659	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGCAGCAGC	rs752055480		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			425	81	492	0	ENST00000375023.3:c.39_47dup	p.Leu14_Leu16dup	p.L14_L16dup	ENST00000375023	NM_004557.3	14	cta/ctGCTGCTGCTa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	143	511	0	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157222591	157222591	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			335	161	479	2	ENST00000346085.5:c.1862del	p.Pro621ArgfsTer47	p.P621Rfs*47	ENST00000346085	NM_020732.3	620	Ccc/cc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157510805	157510806	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1289067120		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			312	168	436	0	ENST00000346085.5:c.3586dup	p.Gln1196ProfsTer14	p.Q1196Pfs*14	ENST00000346085	NM_020732.3	1194	acc/aCcc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527817	157527817	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			327	158	485	1	ENST00000346085.5:c.5547del	p.Leu1850Ter	p.L1850*	ENST00000346085	NM_020732.3	1848	Ccc/cc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508152	106508152	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1446853033		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			415	134	397	0	ENST00000359195.3:c.146G>A	p.Arg49His	p.R49H	ENST00000359195	NM_002649.2	49	cGc/cAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508508	106508508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			436	32	352	0	ENST00000359195.3:c.502G>A	p.Val168Met	p.V168M	ENST00000359195	NM_002649.2	168	Gtg/Atg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			171	196	299	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873887	151873887	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761131667		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			242	281	420	0	ENST00000262189.6:c.8651G>A	p.Arg2884Gln	p.R2884Q	ENST00000262189	NM_170606.2	2884	cGa/cAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012386	152012386	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			340	97	385	6	ENST00000262189.6:c.427del	p.Ser143ValfsTer3	p.S143Vfs*3	ENST00000262189	NM_170606.2	143	Agt/gt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372206	55372206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			408	123	469	0	ENST00000297316.4:c.896C>T	p.Ala299Val	p.A299V	ENST00000297316	NM_022454.3	299	gCg/gTg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70982040	70982040	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113166129		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			409	130	462	1	ENST00000276594.2:c.56C>T	p.Pro19Leu	p.P19L	ENST00000276594	NM_024504.3	19	cCg/cTg																																																																															
NADK	65220	MSKCC	GRCh37	1	1684347	1684348	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCTCCT	rs150880809		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			364	96	426	0	ENST00000341426.5:c.1331_1336dup	p.Glu444_Glu445dup	p.E444_E445dup	ENST00000341426	NM_023018.4	444	ggc/gAGGAGGgc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589686	69589686	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756925670		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			317	211	691	0	ENST00000168712.1:c.167C>T	p.Ala56Val	p.A56V	ENST00000168712	NM_002007.2	56	gCg/gTg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998792	100998792	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1340917879		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			226	171	447	0	ENST00000325455.5:c.1010G>A	p.Ser337Asn	p.S337N	ENST00000325455	NM_001202474.3	337	aGc/aAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432555	49432555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			321	161	462	0	ENST00000301067.7:c.8584C>T	p.Pro2862Ser	p.P2862S	ENST00000301067	NM_003482.3	2862	Cca/Tca																																																																															
DICER1	23405	MSKCC	GRCh37	14	95595827	95595827	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			156	85	278	0	ENST00000343455.3:c.716A>G	p.Asp239Gly	p.D239G	ENST00000343455	NM_177438.2	239	gAc/gGc																																																																															
AKT1	207	MSKCC	GRCh37	14	105236701	105236703	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs1412281689		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	163	394	0	ENST00000349310.3:c.1418_1420del	p.Ser473del	p.S473del	ENST00000349310	NM_001014432.1	473	tCCTac/tac																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99459333	99459333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			288	153	330	0	ENST00000268035.6:c.1969C>A	p.Leu657Ile	p.L657I	ENST00000268035	NM_000875.3	657	Ctt/Att																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121554	2121554	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774895427		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			318	167	458	0	ENST00000219476.3:c.1883G>A	p.Arg628His	p.R628H	ENST00000219476	NM_000548.3	628	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832404	72832404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			307	147	456	0	ENST00000268489.5:c.4177G>A	p.Val1393Met	p.V1393M	ENST00000268489	NM_006885.3	1393	Gtg/Atg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56432347	56432347	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			226	103	241	0	ENST00000407977.2:c.2309G>A	p.Gly770Asp	p.G770D	ENST00000407977		770	gGc/gAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211495	36211495	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			153	77	265	1	ENST00000222270.7:c.1249del	p.Leu417SerfsTer58	p.L417Sfs*58	ENST00000222270	NM_014727.1	416	Ccc/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221621	36221621	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			318	186	494	0	ENST00000222270.7:c.5290T>C	p.Tyr1764His	p.Y1764H	ENST00000222270	NM_014727.1	1764	Tac/Cac																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905945	50905945	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781682472		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			303	151	506	1	ENST00000440232.2:c.917G>A	p.Arg306His	p.R306H	ENST00000440232	NM_002691.3	306	cGc/cAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31025073	31025073	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146743741		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			288	196	427	1	ENST00000375687.4:c.4558G>A	p.Gly1520Ser	p.G1520S	ENST00000375687	NM_015338.5	1520	Ggt/Agt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919213	178919213	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			175	83	298	0	ENST00000263967.3:c.698T>C	p.Leu233Ser	p.L233S	ENST00000263967	NM_006218.2	233	tTg/tCg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430476	181430476	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			423	24	486	0	ENST00000325404.1:c.328T>A	p.Tyr110Asn	p.Y110N	ENST00000325404	NM_003106.3	110	Tac/Aac																																																																															
TET2	54790	MSKCC	GRCh37	4	106156639	106156639	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746523679		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			244	143	468	0	ENST00000380013.4:c.1540C>T	p.His514Tyr	p.H514Y	ENST00000380013	NM_001127208.2	514	Cat/Tat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183307	56183307	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			238	152	394	2	ENST00000399503.3:c.4217A>G	p.Gln1406Arg	p.Q1406R	ENST00000399503	NM_005921.1	1406	cAg/cGg																																																																															
APC	324	MSKCC	GRCh37	5	112173825	112173825	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776878597		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			214	124	379	0	ENST00000257430.4:c.2534G>A	p.Arg845His	p.R845H	ENST00000257430	NM_000038.5	845	cGt/cAt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370714	55370714	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1429058725		P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			362	140	398	0	ENST00000297316.4:c.16G>A	p.Ala6Thr	p.A6T	ENST00000297316	NM_022454.3	6	Gcg/Acg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69005911	69005912	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			316	106	339	0	ENST00000288368.4:c.2327dup	p.Gly777TrpfsTer3	p.G777Wfs*3	ENST00000288368	NM_024870.2	774	-/C																																																																															
PREX2	80243	MSKCC	GRCh37	8	69143567	69143567	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	103	300	0	ENST00000288368.4:c.4776del		p.X1592_splice	ENST00000288368	NM_024870.2	1592																																																																																
RAD21	5885	MSKCC	GRCh37	8	117868968	117868968	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			317	109	255	0	ENST00000297338.2:c.731A>G	p.Asp244Gly	p.D244G	ENST00000297338	NM_006265.2	244	gAt/gGt																																																																															
ABL1	25	MSKCC	GRCh37	9	133730407	133730407	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			230	148	335	0	ENST00000318560.5:c.473C>A	p.Pro158His	p.P158H	ENST00000318560	NM_005157.4	158	cCt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0066393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	65	474	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0066393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	55	342	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95573978	95573978	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	25	416	0	ENST00000343455.3:c.2771del	p.Leu924Ter	p.L924*	ENST00000343455	NM_177438.2	924	tTa/ta																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0066402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	55	325	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2647757	2647757	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201983709		P-0066402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	96	405	0	ENST00000342085.4:c.1660G>A	p.Ala554Thr	p.A554T	ENST00000342085	NM_002613.4	554	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7579340	7579340	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	148	484	0	ENST00000269305.4:c.347del	p.Ser116LeufsTer7	p.S116Lfs*7	ENST00000269305	NM_001126112.2	116	tCt/tt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372128	55372128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	86	505	0	ENST00000297316.4:c.818G>A	p.Arg273Gln	p.R273Q	ENST00000297316	NM_022454.3	273	cGa/cAa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244191	5244191	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1237664443		P-0066402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	54	515	0	ENST00000357368.4:c.1291C>T	p.Arg431Trp	p.R431W	ENST00000357368	NM_002850.3	431	Cgg/Tgg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852483	63852484	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0066402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	53	430	0	ENST00000279873.7:c.3263dup	p.Asn1088LysfsTer73	p.N1088Kfs*73	ENST00000279873	NM_032199.2	1087	-/A																																																																															
KLF5	688	MSKCC	GRCh37	13	73636656	73636656	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	624	574	0	ENST00000377687.4:c.919T>A	p.Ser307Thr	p.S307T	ENST00000377687	NM_001730.3	307	Tca/Aca																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223798	53223798	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			64	117	258	0	ENST00000375401.3:c.3561C>G	p.Ile1187Met	p.I1187M	ENST00000375401	NM_004187.3	1187	atC/atG																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577265	64577265	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	36	546	0	ENST00000337652.1:c.317A>G	p.Tyr106Cys	p.Y106C	ENST00000337652	NM_130803.2	106	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0066454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	99	373	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112175539	112175539	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	79	383	0	ENST00000257430.4:c.4248del	p.Ile1417LeufsTer2	p.I1417Lfs*2	ENST00000257430	NM_000038.5	1416	ggC/gg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0066454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	41	353	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
APC	324	MSKCC	GRCh37	5	112173803	112173803	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0066454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	57	322	0	ENST00000257430.4:c.2512A>T	p.Arg838Ter	p.R838*	ENST00000257430	NM_000038.5	838	Aga/Tga																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609993	81609993	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139892516		P-0066454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	19	480	0	ENST00000298171.2:c.1591C>T	p.Arg531Trp	p.R531W	ENST00000298171	NM_000369.2	531	Cgg/Tgg																																																																															
NADK	65220	MSKCC	GRCh37	1	1691321	1691321	+	intron_variant	Intron	SNP	G	G	T	rs1233142145		P-0066454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	96	380	0	ENST00000341426.5:c.263+2070C>A		p.*88*	ENST00000341426	NM_023018.4																																																																																	
FLT3	2322	MSKCC	GRCh37	13	28609732	28609732	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	57	380	0	ENST00000241453.7:c.1497T>A	p.Ser499Arg	p.S499R	ENST00000241453	NM_004119.2	499	agT/agA																																																																															
NF1	4763	MSKCC	GRCh37	17	29585362	29585363	+	inframe_insertion,splice_region_variant	In_Frame_Ins	INS	-	-	TGGTTAGCC			P-0066454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	71	289	0	ENST00000358273.4:c.4175_4183dup	p.Ser1394_Gln1395insLeuValSer	p.S1394_Q1395insLVS	ENST00000358273	NM_001042492.2	1392	gtg/gTGGTTAGCCtg																																																																															
NF1	4763	MSKCC	GRCh37	17	29559777	29559777	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	94	365	0	ENST00000358273.4:c.3374C>G	p.Ala1125Gly	p.A1125G	ENST00000358273	NM_001042492.2	1125	gCg/gGg																																																																															
ATRX	546	MSKCC	GRCh37	X	76890187	76890187	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	40	291	0	ENST00000373344.5:c.4707G>C	p.Gln1569His	p.Q1569H	ENST00000373344	NM_000489.3	1569	caG/caC																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982993	201982993	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	84	383	0	ENST00000359651.3:c.842A>G	p.Asp281Gly	p.D281G	ENST00000359651		281	gAc/gGc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628014	187628014	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	69	387	0	ENST00000441802.2:c.2968G>C	p.Asp990His	p.D990H	ENST00000441802	NM_005245.3	990	Gac/Cac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0066466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	27	208	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0066466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	105	380	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	126	410	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	68	453	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247295	153247295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	140	395	0	ENST00000281708.4:c.1507G>A	p.Ala503Thr	p.A503T	ENST00000281708	NM_033632.3	503	Gca/Aca																																																																															
ATRX	546	MSKCC	GRCh37	X	76814142	76814142	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0066466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	83	263	0	ENST00000373344.5:c.6502C>T	p.Gln2168Ter	p.Q2168*	ENST00000373344	NM_000489.3	2168	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0066466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	134	297	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
APC	324	MSKCC	GRCh37	5	112173952	112173953	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0066466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	45	389	0	ENST00000257430.4:c.2661_2662del	p.Ala888GlnfsTer23	p.A888Qfs*23	ENST00000257430	NM_000038.5	887	atTGcc/atcc																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTTG			P-0066466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	98	435	0	ENST00000257430.4:c.4470_4474dup	p.Ala1492ValfsTer17	p.A1492Vfs*17	ENST00000257430	NM_000038.5	1490	cat/caTTTTGt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777092	9777092	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146796121		P-0066482-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	20	519	0	ENST00000377346.4:c.856C>T	p.Arg286Trp	p.R286W	ENST00000377346	NM_005026.3	286	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0066482-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	58	284	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0066482-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	240	468	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612346	1612346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769011342		P-0066482-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	121	437	0	ENST00000344749.5:c.1673G>A	p.Arg558His	p.R558H	ENST00000344749	NM_001136139.2	558	cGc/cAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589579	67589593	+	inframe_deletion	In_Frame_Del	DEL	AAATTACATGAATAT	AAATTACATGAATAT	-			P-0066482-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	56	260	0	ENST00000274335.5:c.1344_1358del	p.Lys448_Tyr452del	p.K448_Y452del	ENST00000274335		448	AAATTACATGAATAT/-																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105553	27105553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	76	376	0	ENST00000324856.7:c.5164C>T	p.Arg1722Ter	p.R1722*	ENST00000324856	NM_006015.4	1722	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0066535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	79	310	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
WT1	7490	MSKCC	GRCh37	11	32421555	32421555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	61	397	0	ENST00000332351.3:c.1037C>T	p.Thr346Met	p.T346M	ENST00000332351	NM_024426.4	346	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175322	112175322	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	139	351	0	ENST00000257430.4:c.4031C>A	p.Ser1344Ter	p.S1344*	ENST00000257430	NM_000038.5	1344	tCa/tAa																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46509348	46509348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	83	326	0	ENST00000262741.5:c.1383A>C	p.Arg461Ser	p.R461S	ENST00000262741	NM_003629.3	461	agA/agC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426606	49426611	+	inframe_deletion	In_Frame_Del	DEL	TGTTGC	TGTTGC	-	rs748029700		P-0066535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			761	109	591	0	ENST00000301067.7:c.11877_11882del	p.Gln3964_Gln3965del	p.Q3964_Q3965del	ENST00000301067	NM_003482.3	3959	caGCAACAa/caa																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40460307	40460307	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1220900989		P-0066535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	65	354	0	ENST00000345506.4:c.2018G>A	p.Arg673His	p.R673H	ENST00000345506	NM_003152.3	673	cGc/cAc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176337	24176337	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	66	237	0	ENST00000263121.7:c.1128G>T	p.Arg376Ser	p.R376S	ENST00000263121	NM_003073.3	376	agG/agT																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279846	29279847	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCC	rs958418836		P-0066535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	16	117	0	ENST00000544604.2:c.107_109dup	p.Pro36dup	p.P36dup	ENST00000544604	NM_001206998.1	36	ctg/ctGCCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs397517201		P-0066536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	37	237	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149433745	149433745	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs537011691		P-0066536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	123	375	0	ENST00000286301.3:c.2806G>A	p.Gly936Ser	p.G936S	ENST00000286301	NM_005211.3	936	Ggc/Agc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119050	70119050	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	341	441	1	ENST00000245479.2:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000245479	NM_000346.3	208	Cag/Tag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26029193	26029195	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0066536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	139	279	0	ENST00000435504.4:c.155_157del	p.Pro52del	p.P52del	ENST00000435504		52	cCTCtt/ctt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812259	212812259	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs991337964		P-0066536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	61	360	0	ENST00000342788.4:c.317G>A	p.Arg106His	p.R106H	ENST00000342788	NM_005235.2	106	cGt/cAt																																																																															
SRC	6714	MSKCC	GRCh37	20	36031708	36031708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	275	507	0	ENST00000358208.4:c.1537G>A	p.Glu513Lys	p.E513K	ENST00000358208		513	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0066536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	65	255	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152415669	152415669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	136	385	0	ENST00000206249.3:c.1519C>A	p.Leu507Ile	p.L507I	ENST00000206249	NM_000125.3	507	Ctc/Atc																																																																															
MITF	4286	MSKCC	GRCh37	3	70008497	70008497	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	146	356	0	ENST00000352241.4:c.1087C>A	p.Gln363Lys	p.Q363K	ENST00000352241	NM_198159.2	363	Caa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112173846	112173846	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0066536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	90	362	0	ENST00000257430.4:c.2555T>A	p.Leu852Ter	p.L852*	ENST00000257430	NM_000038.5	852	tTg/tAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117750	70117750	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			733	147	482	0	ENST00000245479.2:c.218T>G	p.Ile73Ser	p.I73S	ENST00000245479	NM_000346.3	73	aTc/aGc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411144	63411144	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	40	196	0	ENST00000330258.3:c.2023C>T	p.Gln675Ter	p.Q675*	ENST00000330258	NM_152424.3	675	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0066610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	107	487	4	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0066610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	157	699	11	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
ALK	238	MSKCC	GRCh37	2	29917794	29917794	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201750304		P-0066610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	113	505	14	ENST00000389048.3:c.874C>T	p.Arg292Cys	p.R292C	ENST00000389048	NM_004304.4	292	Cgc/Tgc																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66526547	66526547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	75	526	2	ENST00000358598.2:c.1103G>A	p.Arg368Gln	p.R368Q	ENST00000358598	NM_212471.2	368	cGa/cAa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212495242	212495242	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	36	455	0	ENST00000342788.4:c.2024T>A	p.Val675Asp	p.V675D	ENST00000342788	NM_005235.2	675	gTt/gAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270156	66270156	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs142184664		P-0066610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	34	511	0	ENST00000273854.3:c.1726G>T	p.Ala576Ser	p.A576S	ENST00000273854	NM_004439.5	576	Gct/Tct																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0066619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	84	708	2	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0066619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	154	757	4	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577505	7577505	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	129	631	3	ENST00000269305.4:c.776A>T	p.Asp259Val	p.D259V	ENST00000269305	NM_001126112.2	259	gAc/gTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575096	48575096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	67	646	4	ENST00000342988.3:c.290G>A	p.Arg97His	p.R97H	ENST00000342988	NM_005359.5	97	cGt/cAt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712823	43712823	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28903077		P-0066619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	147	843	1	ENST00000382044.4:c.4361G>A	p.Arg1454Gln	p.R1454Q	ENST00000382044	NM_001141980.1	1454	cGa/cAa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43699735	43699735	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137879443		P-0066619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	138	776	4	ENST00000382044.4:c.5780C>T	p.Thr1927Met	p.T1927M	ENST00000382044	NM_001141980.1	1927	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs770248150		P-0066619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	77	609	2	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																																																															
ALB	213	MSKCC	GRCh37	4	74282070	74282070	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs370819889		P-0066619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	47	489	1	ENST00000295897.4:c.1289C>T	p.Ala430Val	p.A430V	ENST00000295897	NM_000477.5	430	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175560	112175561	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAGATAG			P-0066619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	41	767	6	ENST00000257430.4:c.4272_4279dup	p.Pro1427GlnfsTer49	p.P1427Qfs*49	ENST00000257430	NM_000038.5	1423	-/CCAGATAG																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029105	14029105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	79	629	3	ENST00000311895.7:c.1316C>T	p.Thr439Ile	p.T439I	ENST00000311895	NM_005236.2	439	aCc/aTc																																																																															
MSH3	4437	MSKCC	GRCh37	5	80057384	80057384	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	38	638	0	ENST00000265081.6:c.1783G>C	p.Asp595His	p.D595H	ENST00000265081	NM_002439.4	595	Gat/Cat																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258986	153258986	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	39	613	1	ENST00000281708.4:c.829C>T	p.Gln277Ter	p.Q277*	ENST00000281708	NM_033632.3	277	Caa/Taa																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112888189	112888189	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507511		P-0066646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	71	499	0	ENST00000351677.2:c.205G>A	p.Glu69Lys	p.E69K	ENST00000351677	NM_002834.3	69	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0066646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	24	393	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0066646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	85	485	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188188	32188188	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370312303		P-0066646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	70	660	0	ENST00000375023.3:c.1153C>T	p.Arg385Cys	p.R385C	ENST00000375023	NM_004557.3	385	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112177149	112177149	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	31	558	0	ENST00000257430.4:c.5858A>G	p.Asn1953Ser	p.N1953S	ENST00000257430	NM_000038.5	1953	aAt/aGt																																																																															
APC	324	MSKCC	GRCh37	5	112177137	112177137	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	31	575	0	ENST00000257430.4:c.5849del	p.Lys1950SerfsTer20	p.K1950Sfs*20	ENST00000257430	NM_000038.5	1949	gAa/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938931	178938933	+	inframe_deletion	In_Frame_Del	DEL	GAT	GAT	-			P-0066646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	48	213	0	ENST00000263967.3:c.2175_2177del	p.Asp725del	p.D725del	ENST00000263967	NM_006218.2	725	GAT/-																																																																															
RAC1	5879	MSKCC	GRCh37	7	6431556	6431556	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0066646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	51	305	0	ENST00000356142.4:c.109T>G	p.Phe37Val	p.F37V	ENST00000356142	NM_018890.3	37	Ttt/Gtt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782032	9782032	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	111	368	0	ENST00000377346.4:c.2059del		p.X687_splice	ENST00000377346	NM_005026.3	687																																																																																
SPEN	23013	MSKCC	GRCh37	1	16255154	16255154	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766167369		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	150	524	0	ENST00000375759.3:c.2419C>T	p.Arg807Cys	p.R807C	ENST00000375759	NM_015001.2	807	Cgc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259207	16259207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	145	475	0	ENST00000375759.3:c.6472C>T	p.Pro2158Ser	p.P2158S	ENST00000375759	NM_015001.2	2158	Ccg/Tcg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101174	27101174	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	124	442	0	ENST00000324856.7:c.4456C>T	p.Gln1486Ter	p.Q1486*	ENST00000324856	NM_006015.4	1486	Cag/Tag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852245	63852245	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1376484834		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	107	417	0	ENST00000279873.7:c.3023C>T	p.Ala1008Val	p.A1008V	ENST00000279873	NM_032199.2	1008	gCg/gTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	182	319	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205158	61205158	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777442412		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	108	350	1	ENST00000301761.2:c.98G>A	p.Arg33His	p.R33H	ENST00000301761	NM_017841.2	33	cGc/cAc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	422242	422242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769792722		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	75	364	0	ENST00000399788.2:c.3016G>A	p.Ala1006Thr	p.A1006T	ENST00000399788	NM_001042603.1	1006	Gct/Act																																																																															
KDM5A	5927	MSKCC	GRCh37	12	432787	432787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	121	396	0	ENST00000399788.2:c.2129C>A	p.Pro710His	p.P710H	ENST00000399788	NM_001042603.1	710	cCc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	102	276	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	121	393	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29004254	29004254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143093353		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	115	365	0	ENST00000282397.4:c.1039G>A	p.Val347Ile	p.V347I	ENST00000282397	NM_002019.4	347	Gta/Ata																																																																															
RB1	5925	MSKCC	GRCh37	13	48954300	48954300	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	18	201	0	ENST00000267163.4:c.1422-1G>A		p.X474_splice	ENST00000267163	NM_000321.2	474																																																																																
CYP19A1	1588	MSKCC	GRCh37	15	51503148	51503148	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs72552260		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	32	368	0	ENST00000260433.2:c.1369C>T	p.Arg457Ter	p.R457*	ENST00000260433		457	Cga/Tga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420199	88420199	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	66	361	0	ENST00000360948.2:c.2487G>T	p.Lys829Asn	p.K829N	ENST00000360948	NM_001012338.2	829	aaG/aaT																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788626	3788626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	106	365	0	ENST00000262367.5:c.4328G>A	p.Arg1443His	p.R1443H	ENST00000262367	NM_004380.2	1443	cGt/cAt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807914	3807914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	114	413	0	ENST00000262367.5:c.3505C>T	p.Arg1169Cys	p.R1169C	ENST00000262367	NM_004380.2	1169	Cgc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832376	72832376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	117	408	1	ENST00000268489.5:c.4205G>A	p.Arg1402His	p.R1402H	ENST00000268489	NM_006885.3	1402	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832445	72832445	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753592536		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	102	408	0	ENST00000268489.5:c.4136C>T	p.Thr1379Met	p.T1379M	ENST00000268489	NM_006885.3	1379	aCg/aTg																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544659	86544659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	48	475	0	ENST00000262426.4:c.484G>A	p.Gly162Ser	p.G162S	ENST00000262426	NM_001451.2	162	Ggc/Agc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347224	89347224	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780224924		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	116	450	0	ENST00000301030.4:c.5726C>T	p.Pro1909Leu	p.P1909L	ENST00000301030	NM_001256183.1	1909	cCg/cTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	142	418	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435080	56435080	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	151	504	0	ENST00000407977.2:c.2057C>A	p.Pro686His	p.P686H	ENST00000407977		686	cCc/cAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285038	15285038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	109	363	0	ENST00000263388.2:c.4577G>A	p.Arg1526His	p.R1526H	ENST00000263388	NM_000435.2	1526	cGt/cAt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18274078	18274078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	143	432	1	ENST00000222254.8:c.1296G>T	p.Gln432His	p.Q432H	ENST00000222254	NM_005027.3	432	caG/caT																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18280012	18280012	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1438495093		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	26	317	0	ENST00000222254.8:c.2095G>A	p.Ala699Thr	p.A699T	ENST00000222254	NM_005027.3	699	Gcc/Acc																																																																															
CIC	23152	MSKCC	GRCh37	19	42798822	42798822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	119	380	1	ENST00000575354.2:c.4394G>A	p.Arg1465His	p.R1465H	ENST00000575354	NM_015125.3	1465	cGc/cAc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855837	45855837	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762141272		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	128	429	0	ENST00000391945.4:c.1973G>A	p.Arg658His	p.R658H	ENST00000391945	NM_000400.3	658	cGc/cAc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470559	25470559	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs761839006		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	47	390	0	ENST00000264709.3:c.915G>A	p.Trp305Ter	p.W305*	ENST00000264709	NM_175629.2	305	tgG/tgA																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128028956	128028956	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775316471		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	86	364	0	ENST00000285398.2:c.1901G>A	p.Arg634His	p.R634H	ENST00000285398	NM_000122.1	634	cGt/cAt																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175869	24175869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	122	430	0	ENST00000263121.7:c.1097G>A	p.Arg366His	p.R366H	ENST00000263121	NM_003073.3	366	cGc/cAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41573002	41573002	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1266719702		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	67	497	0	ENST00000263253.7:c.5287C>T	p.Arg1763Trp	p.R1763W	ENST00000263253	NM_001429.3	1763	Cgg/Tgg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	115	373	0	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098912	47098912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	37	410	0	ENST00000409792.3:c.6362G>A	p.Arg2121His	p.R2121H	ENST00000409792	NM_014159.6	2121	cGc/cAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164711	47164711	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201984344		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	147	387	0	ENST00000409792.3:c.1415G>A	p.Arg472His	p.R472H	ENST00000409792	NM_014159.6	472	cGt/cAt																																																																															
BCL6	604	MSKCC	GRCh37	3	187440347	187440347	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1202633041		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	74	293	0	ENST00000232014.4:c.2020C>T	p.Arg674Ter	p.R674*	ENST00000232014	NM_001130845.1	674	Cga/Tga																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980493	1980493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	54	443	0	ENST00000382895.3:c.3955G>A	p.Gly1319Arg	p.G1319R	ENST00000382895	NM_133330.2	1319	Ggg/Agg																																																																															
REST	5978	MSKCC	GRCh37	4	57796069	57796069	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1419352292		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	128	311	0	ENST00000309042.7:c.1045C>T	p.Arg349Cys	p.R349C	ENST00000309042	NM_005612.4	349	Cgc/Tgc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356134	66356134	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756357402		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	112	386	0	ENST00000273854.3:c.1363C>T	p.Arg455Trp	p.R455W	ENST00000273854	NM_004439.5	455	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	136	454	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244278	153244278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	114	365	1	ENST00000281708.4:c.1879G>A	p.Val627Met	p.V627M	ENST00000281708	NM_033632.3	627	Gtg/Atg																																																																															
TERT	7015	MSKCC	GRCh37	5	1293593	1293593	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1482602039		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	29	392	0	ENST00000310581.5:c.1408C>T	p.Arg470Cys	p.R470C	ENST00000310581	NM_198253.2	470	Cgc/Tgc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	44	317	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	83	239	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	72	360	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149456962	149456962	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764483518		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	202	429	0	ENST00000286301.3:c.766C>T	p.Arg256Cys	p.R256C	ENST00000286301	NM_005211.3	256	Cgt/Tgt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502666	149502666	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749226501		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	78	475	0	ENST00000261799.4:c.2122C>T	p.Arg708Cys	p.R708C	ENST00000261799	NM_002609.3	708	Cgc/Tgc																																																																															
IRF4	3662	MSKCC	GRCh37	6	394896	394896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	34	386	1	ENST00000380956.4:c.292C>T	p.Arg98Trp	p.R98W	ENST00000380956	NM_001195286.1	98	Cgg/Tgg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323362	31323363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	133	322	0	ENST00000412585.2:c.626dup	p.Thr211AspfsTer10	p.T211Dfs*10	ENST00000412585	NM_005514.6	209	cca/ccCa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94068123	94068123	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778426683		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	27	277	0	ENST00000369303.4:c.839G>A	p.Gly280Asp	p.G280D	ENST00000369303	NM_004440.3	280	gGc/gAc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2966388	2966388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145836432		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	94	298	0	ENST00000396946.4:c.1792G>A	p.Ala598Thr	p.A598T	ENST00000396946	NM_032415.4	598	Gcc/Acc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968244	2968244	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1161484391		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	102	383	0	ENST00000396946.4:c.1742C>T	p.Ala581Val	p.A581V	ENST00000396946	NM_032415.4	581	gCg/gTg																																																																															
MET	4233	MSKCC	GRCh37	7	116340050	116340050	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	36	318	0	ENST00000397752.3:c.917del	p.Lys306ArgfsTer28	p.K306Rfs*28	ENST00000397752	NM_000245.2	304	agA/ag																																																																															
EZH2	2146	MSKCC	GRCh37	7	148515136	148515136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	36	393	1	ENST00000320356.2:c.1073G>A	p.Arg358His	p.R358H	ENST00000320356	NM_004456.4	358	cGc/cAc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285950	38285950	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1307187624		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	133	390	0	ENST00000425967.3:c.461C>T	p.Ala154Val	p.A154V	ENST00000425967	NM_001174067.1	154	gCt/gTt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737070	145737070	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779410033		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	116	387	0	ENST00000428558.2:c.3496G>A	p.Gly1166Ser	p.G1166S	ENST00000428558	NM_004260.3	1166	Ggc/Agc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211415	98211415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	101	344	1	ENST00000331920.6:c.3740C>T	p.Ala1247Val	p.A1247V	ENST00000331920	NM_000264.3	1247	gCg/gTg																																																																															
ABL1	25	MSKCC	GRCh37	9	133761001	133761003	+	missense_variant	Missense_Mutation	ONP	AGC	AGC	GGT			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	96	364	0	ENST00000318560.5:c.3324_3326delinsGGT	p.Ala1109Val	p.A1109V	ENST00000318560	NM_005157.4	1108	ccAGCg/ccGGTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413060	63413060	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769613326		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	115	212	0	ENST00000330258.3:c.107C>T	p.Ala36Val	p.A36V	ENST00000330258	NM_152424.3	36	gCg/gTg																																																																															
AR	367	MSKCC	GRCh37	X	66766237	66766237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	98	161	0	ENST00000374690.3:c.1249G>A	p.Ala417Thr	p.A417T	ENST00000374690	NM_000044.3	417	Gcg/Acg																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	24	91	2	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
MPL	4352	MSKCC	GRCh37	1	43812576	43812576	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	124	422	0	ENST00000372470.3:c.1279T>C	p.Tyr427His	p.Y427H	ENST00000372470	NM_005373.2	427	Tac/Cac																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279651	123279651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	114	495	0	ENST00000358487.5:c.781G>A	p.Gly261Arg	p.G261R	ENST00000358487	NM_000141.4	261	Gga/Aga																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572092	64572092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	38	460	0	ENST00000337652.1:c.1562G>A	p.Arg521Gln	p.R521Q	ENST00000337652	NM_130803.2	521	cGg/cAg																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518076	69518076	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	35	305	0	ENST00000294312.3:c.289A>C	p.Ser97Arg	p.S97R	ENST00000294312	NM_005117.2	97	Agc/Cgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427968	49427968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	47	359	0	ENST00000301067.7:c.10622C>A	p.Ala3541Asp	p.A3541D	ENST00000301067	NM_003482.3	3541	gCt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435952	49435952	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	42	429	0	ENST00000301067.7:c.6029A>G	p.Glu2010Gly	p.E2010G	ENST00000301067	NM_003482.3	2010	gAg/gGg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885214	111885214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	52	425	0	ENST00000341259.2:c.1102C>A	p.Pro368Thr	p.P368T	ENST00000341259	NM_005475.2	368	Ccc/Acc																																																																															
SETD8	387893	MSKCC	GRCh37	12	123875244	123875244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	27	70	0	ENST00000330479.4:c.200G>A	p.Arg67His	p.R67H	ENST00000330479	NM_020382.3	67	cGt/cAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32936740	32936740	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs80359015		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	117	362	0	ENST00000380152.3:c.7886G>A	p.Trp2629Ter	p.W2629*	ENST00000380152		2629	tGg/tAg																																																																															
RB1	5925	MSKCC	GRCh37	13	48954359	48954359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	27	276	0	ENST00000267163.4:c.1480G>A	p.Val494Ile	p.V494I	ENST00000267163	NM_000321.2	494	Gta/Ata																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436765	110436765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	93	422	0	ENST00000375856.3:c.1636G>T	p.Asp546Tyr	p.D546Y	ENST00000375856	NM_003749.2	546	Gac/Tac																																																																															
DICER1	23405	MSKCC	GRCh37	14	95566250	95566250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780488568		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	121	347	1	ENST00000343455.3:c.4073G>A	p.Arg1358His	p.R1358H	ENST00000343455	NM_177438.2	1358	cGc/cAc																																																																															
GREM1	26585	MSKCC	GRCh37	15	33022925	33022925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	52	348	0	ENST00000300177.4:c.34C>T	p.Leu12Phe	p.L12F	ENST00000300177	NM_001191322.1	12	Ctt/Ttt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134968	2134968	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747613240		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	40	411	0	ENST00000219476.3:c.4510C>T	p.Leu1504Phe	p.L1504F	ENST00000219476	NM_000548.3	1504	Ctc/Ttc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831494	72831494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	116	441	0	ENST00000268489.5:c.5087C>T	p.Pro1696Leu	p.P1696L	ENST00000268489	NM_006885.3	1696	cCt/cTt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944325	81944325	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	96	332	0	ENST00000359376.3:c.1934C>A	p.Pro645Gln	p.P645Q	ENST00000359376	NM_002661.3	645	cCg/cAg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89833632	89833632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	73	291	0	ENST00000389301.3:c.2518G>A	p.Ala840Thr	p.A840T	ENST00000389301	NM_000135.2	840	Gca/Aca																																																																															
NF1	4763	MSKCC	GRCh37	17	29552243	29552243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151138158		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	90	298	0	ENST00000358273.4:c.1976G>A	p.Arg659Gln	p.R659Q	ENST00000358273	NM_001042492.2	659	cGg/cAg																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38788563	38788563	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	90	327	0	ENST00000348513.6:c.598C>A	p.His200Asn	p.H200N	ENST00000348513	NM_003079.4	200	Cac/Aac																																																																															
BRCA1	672	MSKCC	GRCh37	17	41256975	41256975	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs397508940		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	30	280	0	ENST00000357654.3:c.213-2A>G		p.X71_splice	ENST00000357654	NM_007294.3	71																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11096967	11096967	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs539710314		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	43	388	0	ENST00000344626.4:c.458C>T	p.Pro153Leu	p.P153L	ENST00000344626	NM_003072.3	153	cCg/cTg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18943071	18943071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	70	489	0	ENST00000262803.5:c.53C>T	p.Thr18Met	p.T18M	ENST00000262803	NM_002911.3	18	aCg/aTg																																																																															
AXL	558	MSKCC	GRCh37	19	41745195	41745195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	95	328	0	ENST00000301178.4:c.1261G>A	p.Val421Ile	p.V421I	ENST00000301178	NM_021913.4	421	Gta/Ata																																																																															
CIC	23152	MSKCC	GRCh37	19	42793076	42793076	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	33	404	0	ENST00000575354.2:c.968T>A	p.Leu323His	p.L323H	ENST00000575354	NM_015125.3	323	cTc/cAc																																																																															
CASP8	841	MSKCC	GRCh37	2	202149926	202149926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	56	472	0	ENST00000358485.4:c.1367C>T	p.Ala456Val	p.A456V	ENST00000358485	NM_001080125.1	456	gCt/gTt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164749	36164749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	48	528	0	ENST00000300305.3:c.1126C>T	p.Arg376Cys	p.R376C	ENST00000300305		376	Cgc/Tgc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125310	47125310	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	132	370	0	ENST00000409792.3:c.5960T>C	p.Val1987Ala	p.V1987A	ENST00000409792	NM_014159.6	1987	gTg/gCg																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898596	63898596	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs564106533		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	124	518	0	ENST00000295900.6:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000295900	NM_000333.3	108	Gac/Tac																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665421	138665421	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1449136816		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	85	337	0	ENST00000330315.3:c.144G>T	p.Lys48Asn	p.K48N	ENST00000330315	NM_023067.3	48	aaG/aaT																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146512	185146512	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	124	361	0	ENST00000265026.3:c.146del	p.Lys49ArgfsTer8	p.K49Rfs*8	ENST00000265026	NM_004721.4	48	gAa/ga																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1952820	1952820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	36	431	0	ENST00000382895.3:c.1903G>A	p.Glu635Lys	p.E635K	ENST00000382895	NM_133330.2	635	Gag/Aag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31495445	31495445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	33	399	0	ENST00000344624.3:c.1703C>T	p.Ala568Val	p.A568V	ENST00000344624		568	gCt/gTt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520705	176520705	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141384037		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	28	342	0	ENST00000292408.4:c.1448G>A	p.Arg483His	p.R483H	ENST00000292408	NM_213647.1	483	cGt/cAt																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858300	27858300	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			747	46	554	1	ENST00000359303.2:c.271A>G	p.Met91Val	p.M91V	ENST00000359303	NM_003535.2	91	Atg/Gtg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324080	31324080	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs41546015		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	20	217	0	ENST00000412585.2:c.483C>G	p.Asp161Glu	p.D161E	ENST00000412585	NM_005514.6	161	gaC/gaG																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026663	6026663	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs63750770		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			714	97	389	0	ENST00000265849.7:c.1733G>A	p.Arg578His	p.R578H	ENST00000265849	NM_000535.5	578	cGt/cAt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739742	145739742	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755865911		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	99	405	0	ENST00000428558.2:c.1709G>A	p.Arg570Gln	p.R570Q	ENST00000428558	NM_004260.3	570	cGg/cAg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139563011	139563011	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs548014889		P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	114	397	1	ENST00000308874.7:c.83G>A	p.Arg28His	p.R28H	ENST00000308874		28	cGt/cAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045185	47045185	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	121	182	0	ENST00000329236.7:c.2192T>C	p.Met731Thr	p.M731T	ENST00000329236	NM_001204466.1	731	aTg/aCg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123217318	123217318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	27	159	0	ENST00000218089.9:c.2972G>A	p.Ser991Asn	p.S991N	ENST00000218089	NM_001042749.1	991	aGc/aAc																																																																															
NADK	65220	MSKCC	GRCh37	1	1688567	1688568	+	intron_variant	Intron	INS	-	-	C	rs746550458		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	127	447	0	ENST00000341426.5:c.393+52dup		p.*131*	ENST00000341426	NM_023018.4																																																																																	
TNFRSF14	8764	MSKCC	GRCh37	1	2492119	2492119	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	46	466	0	ENST00000355716.4:c.517A>G	p.Asn173Asp	p.N173D	ENST00000355716	NM_003820.2	173	Aat/Gat																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429978	78429978	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	192	384	0	ENST00000370768.2:c.901del	p.Ile301TyrfsTer22	p.I301Yfs*22	ENST00000370768	NM_003902.3	301	Ata/ta																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175957465	175957465	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	133	412	0	ENST00000367669.3:c.1931del	p.Asn644ThrfsTer3	p.N644Tfs*3	ENST00000367669	NM_022457.5	644	aAc/ac																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488893	231488894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs567805129		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	154	420	0	ENST00000295050.7:c.1263dup	p.Ile422TyrfsTer11	p.I422Yfs*11	ENST00000295050	NM_032018.5	419	aat/aaTt																																																																															
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	169	415	6	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	136	369	7	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594883	47594883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780075355		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	180	589	0	ENST00000395288.2:c.1156del	p.Glu386ArgfsTer27	p.E386Rfs*27	ENST00000395288	NM_016506.5	386	Gag/ag																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589560	69589560	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745670123		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	59	739	1	ENST00000168712.1:c.293C>T	p.Ala98Val	p.A98V	ENST00000168712	NM_002007.2	98	gCg/gTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944732	71944732	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	48	517	0	ENST00000298229.2:c.2160del	p.Val721CysfsTer37	p.V721Cfs*37	ENST00000298229	NM_001567.3	719	tCc/tc																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945008	31945008	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	58	566	1	ENST00000340398.3:c.93del	p.Ser32LeufsTer5	p.S32Lfs*5	ENST00000340398	NM_001013699.2	31	ccC/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424427	49424427	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs577303074		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	60	422	1	ENST00000301067.7:c.13796C>T	p.Ala4599Val	p.A4599V	ENST00000301067	NM_003482.3	4599	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	37	516	1	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																															
RAB35	11021	MSKCC	GRCh37	12	120535059	120535059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	180	455	0	ENST00000229340.5:c.596G>A	p.Arg199His	p.R199H	ENST00000229340	NM_006861.6	199	cGc/cAc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	134	484	5	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562286	21562286	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755582869		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	166	568	0	ENST00000382592.4:c.1633C>T	p.Arg545Cys	p.R545C	ENST00000382592	NM_014572.2	545	Cgt/Tgt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562888	21562888	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759368766		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	116	481	1	ENST00000382592.4:c.1031C>T	p.Pro344Leu	p.P344L	ENST00000382592	NM_014572.2	344	cCg/cTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972625	32972626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1328254546		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	172	408	0	ENST00000380152.3:c.9981dup	p.Phe3328IlefsTer3	p.F3328Ifs*3	ENST00000380152		3325	-/A																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435306	110435306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	110	571	0	ENST00000375856.3:c.3095C>A	p.Pro1032Gln	p.P1032Q	ENST00000375856	NM_003749.2	1032	cCg/cAg																																																																															
AKT1	207	MSKCC	GRCh37	14	105241276	105241276	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	69	478	0	ENST00000349310.3:c.632C>T	p.Thr211Ile	p.T211I	ENST00000349310	NM_001014432.1	211	aCa/aTa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712535	43712535	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756376679		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	221	474	0	ENST00000382044.4:c.4649C>T	p.Thr1550Met	p.T1550M	ENST00000382044	NM_001141980.1	1550	aCg/aTg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457294	67457294	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1085307496		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	197	680	0	ENST00000327367.4:c.268C>T	p.Arg90Cys	p.R90C	ENST00000327367	NM_005902.3	90	Cgc/Tgc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817720	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	144	396	5	ENST00000262367.5:c.3250dup	p.Ile1084AsnfsTer3	p.I1084Nfs*3	ENST00000262367	NM_004380.2	1084	atc/aAtc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3828768	3828768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	95	478	0	ENST00000262367.5:c.1874G>A	p.Arg625His	p.R625H	ENST00000262367	NM_004380.2	625	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578371	7578371	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	178	524	0	ENST00000269305.4:c.559G>T	p.Gly187Cys	p.G187C	ENST00000269305	NM_001126112.2	187	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	190	482	0	ENST00000269305.4:c.379T>C	p.Ser127Pro	p.S127P	ENST00000269305	NM_001126112.2	127	Tcc/Ccc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16022738	16022738	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	145	347	2	ENST00000268712.3:c.1914del	p.Gly639ValfsTer2	p.G639Vfs*2	ENST00000268712	NM_006311.3	638	aaA/aa																																																																															
NF1	4763	MSKCC	GRCh37	17	29552144	29552144	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	47	385	0	ENST00000358273.4:c.1882del	p.Tyr628ThrfsTer3	p.Y628Tfs*3	ENST00000358273	NM_001042492.2	626	cTt/ct																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870631	40870631	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs751414770		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	128	372	0	ENST00000428826.2:c.772C>T	p.Arg258Ter	p.R258*	ENST00000428826		258	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	386	565	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368203	45368203	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	69	387	0	ENST00000262160.6:c.1399T>C	p.Ser467Pro	p.S467P	ENST00000262160	NM_005901.5	467	Tca/Cca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212257	5212257	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs571743236		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	59	493	0	ENST00000357368.4:c.4774G>A	p.Gly1592Ser	p.G1592S	ENST00000357368	NM_002850.3	1592	Ggt/Agt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271870	15271870	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528151296		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	166	593	0	ENST00000263388.2:c.6569C>T	p.Ala2190Val	p.A2190V	ENST00000263388	NM_000435.2	2190	gCg/gTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272336	15272337	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs771517374		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	34	501	1	ENST00000263388.2:c.6102dup	p.Gly2035ArgfsTer60	p.G2035Rfs*60	ENST00000263388	NM_000435.2	2034	-/C																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285086	15285086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	151	497	0	ENST00000263388.2:c.4529G>A	p.Arg1510His	p.R1510H	ENST00000263388	NM_000435.2	1510	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216184	36216184	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	153	577	2	ENST00000222270.7:c.3596del	p.Gly1199AlafsTer156	p.G1199Afs*156	ENST00000222270	NM_014727.1	1198	Ggg/gg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	173	621	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
CIC	23152	MSKCC	GRCh37	19	42795609	42795609	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	206	706	1	ENST00000575354.2:c.2694del	p.Ala900ProfsTer24	p.A900Pfs*24	ENST00000575354	NM_015125.3	897	Ccc/cc																																																																															
CIC	23152	MSKCC	GRCh37	19	42796882	42796883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761345552		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	148	582	3	ENST00000575354.2:c.3347dup	p.Ser1117LysfsTer34	p.S1117Kfs*34	ENST00000575354	NM_015125.3	1114	gcc/gCcc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523087	25523087	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746009417		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	144	437	0	ENST00000264709.3:c.98G>A	p.Arg33His	p.R33H	ENST00000264709	NM_175629.2	33	cGt/cAt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213242	39213243	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	82	578	0	ENST00000402219.2:c.3724dup	p.Ser1242LysfsTer2	p.S1242Kfs*2	ENST00000402219	NM_005633.3	1242	agt/aAgt																																																																															
SRC	6714	MSKCC	GRCh37	20	36030877	36030877	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751005087		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	159	415	1	ENST00000358208.4:c.1156G>A	p.Val386Ile	p.V386I	ENST00000358208		386	Gtc/Atc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	27	420	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	144	423	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206814	36206814	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150042294		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	170	465	1	ENST00000300305.3:c.698G>A	p.Arg233His	p.R233H	ENST00000300305		233	cGc/cAc																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655236	45655236	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140894768		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	154	392	1	ENST00000407780.3:c.616G>A	p.Ala206Thr	p.A206T	ENST00000407780	NM_001283052.1	206	Gca/Aca																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	314	462	19	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165283	47165283	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	188	465	0	ENST00000409792.3:c.843del	p.Glu282LysfsTer19	p.E282Kfs*19	ENST00000409792	NM_014159.6	281	aaA/aa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960080	134960080	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1042786		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	145	491	0	ENST00000398015.3:c.2437G>A	p.Val813Ile	p.V813I	ENST00000398015	NM_004441.4	813	Gtc/Atc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	129	372	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	132	454	1	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	35	473	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187558039	187558039	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	39	377	0	ENST00000441802.2:c.3672del	p.Lys1225AsnfsTer9	p.K1225Nfs*9	ENST00000441802	NM_005245.3	1224	ccC/cc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945092	38945092	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769767383		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	162	411	0	ENST00000357387.3:c.4712C>T	p.Ser1571Leu	p.S1571L	ENST00000357387	NM_152756.3	1571	tCg/tTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588981	67588981	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	28	405	0	ENST00000274335.5:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000274335		358	Cga/Tga																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	173	415	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	89	293	1	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs758740142		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	156	331	1	ENST00000265335.6:c.2801del	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	138	468	0	ENST00000261937.6:c.89del	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																															
IRF4	3662	MSKCC	GRCh37	6	393180	393180	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1403333371		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	66	396	0	ENST00000380956.4:c.28G>A	p.Gly10Arg	p.G10R	ENST00000380956	NM_001195286.1	10	Gga/Aga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170135	32170135	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs542331250		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	171	514	0	ENST00000375023.3:c.3473G>A	p.Arg1158Gln	p.R1158Q	ENST00000375023	NM_004557.3	1158	cGa/cAa																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288785	33288785	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765273333		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	66	445	0	ENST00000374542.5:c.767G>A	p.Arg256His	p.R256H	ENST00000374542	NM_001141970.1	256	cGc/cAc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553602	106553602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	179	522	0	ENST00000369096.4:c.1567G>A	p.Ala523Thr	p.A523T	ENST00000369096	NM_001198.3	523	Gcc/Acc																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	65	283	1	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741409	145741409	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs549497811		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	185	588	0	ENST00000428558.2:c.1094G>A	p.Arg365Gln	p.R365Q	ENST00000428558	NM_004260.3	365	cGg/cAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319934	8319934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764537367		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	71	386	0	ENST00000356435.5:c.5567C>T	p.Thr1856Met	p.T1856M	ENST00000356435		1856	aCg/aTg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786002	135786002	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769331772		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	158	490	0	ENST00000298552.3:c.1219G>A	p.Val407Met	p.V407M	ENST00000298552	NM_001162426.1	407	Gtg/Atg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934301	39934302	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			78	155	219	0	ENST00000378444.4:c.297_298del	p.Lys100ArgfsTer85	p.K100Rfs*85	ENST00000378444	NM_001123385.1	99	gaGAaa/gaaa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228288	53228288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	131	225	0	ENST00000375401.3:c.2114G>A	p.Arg705His	p.R705H	ENST00000375401	NM_004187.3	705	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023043	27023043	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	18	356	0	ENST00000324856.7:c.149T>C	p.Met50Thr	p.M50T	ENST00000324856	NM_006015.4	50	aTg/aCg																																																																															
IL10	3586	MSKCC	GRCh37	1	206944712	206944712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	191	319	0	ENST00000423557.1:c.214G>A	p.Glu72Lys	p.E72K	ENST00000423557	NM_000572.2	72	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115779	8115779	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	39	466	1	ENST00000346208.3:c.1125C>A	p.Cys375Ter	p.C375*	ENST00000346208		375	tgC/tgA																																																																															
CTR9	9646	MSKCC	GRCh37	11	10795708	10795710	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-	rs968571283		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	49	449	0	ENST00000361367.2:c.2880_2882del	p.Arg962del	p.R962del	ENST00000361367	NM_014633.3	959	aaGAGg/aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433584	49433584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	175	538	0	ENST00000301067.7:c.7969G>A	p.Ala2657Thr	p.A2657T	ENST00000301067	NM_003482.3	2657	Gcg/Acg																																																																															
SETD8	387893	MSKCC	GRCh37	12	123875328	123875328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	44	299	0	ENST00000330479.4:c.284G>A	p.Arg95Gln	p.R95Q	ENST00000330479	NM_020382.3	95	cGa/cAa																																																																															
RB1	5925	MSKCC	GRCh37	13	48953749	48953749	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1312442837		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	45	207	0	ENST00000267163.4:c.1352G>A	p.Arg451His	p.R451H	ENST00000267163	NM_000321.2	451	cGc/cAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434939	110434941	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-	rs1262166340		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	75	503	0	ENST00000375856.3:c.3460_3462del	p.Ser1154del	p.S1154del	ENST00000375856	NM_003749.2	1154	TCC/-																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30108024	30108024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	30	333	0	ENST00000331968.5:c.783G>T	p.Lys261Asn	p.K261N	ENST00000331968	NM_002742.2	261	aaG/aaT																																																																															
AKT1	207	MSKCC	GRCh37	14	105239378	105239378	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1247419183		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	201	605	0	ENST00000349310.3:c.1009G>A	p.Val337Met	p.V337M	ENST00000349310	NM_001014432.1	337	Gtg/Atg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465644	99465644	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	175	419	0	ENST00000268035.6:c.2470del	p.Arg824GlyfsTer15	p.R824Gfs*15	ENST00000268035	NM_000875.3	823	gcA/gc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639077	3639077	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	151	506	1	ENST00000294008.3:c.4562C>A	p.Pro1521His	p.P1521H	ENST00000294008	NM_032444.2	1521	cCt/cAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032192	10032193	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	23	447	0	ENST00000330684.3:c.630dup	p.Glu211Ter	p.E211*	ENST00000330684	NM_001134407.1	210	-/T																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041990	14041990	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	197	459	0	ENST00000311895.7:c.2537C>A	p.Pro846His	p.P846H	ENST00000311895	NM_005236.2	846	cCt/cAt																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38793825	38793825	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	189	381	0	ENST00000348513.6:c.157-1G>T		p.X53_splice	ENST00000348513	NM_003079.4	53																																																																																
EZH1	2145	MSKCC	GRCh37	17	40880880	40880880	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754966338		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	109	358	0	ENST00000428826.2:c.80G>A	p.Arg27Gln	p.R27Q	ENST00000428826		27	cGa/cAa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41201139	41201139	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	105	390	0	ENST00000357654.3:c.5405C>T	p.Thr1802Ile	p.T1802I	ENST00000357654	NM_007294.3	1802	aCa/aTa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554152	63554153	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	376	533	0	ENST00000307078.5:c.586_587del	p.Tyr196ProfsTer16	p.Y196Pfs*16	ENST00000307078	NM_004655.3	196	TAc/c																																																																															
STK11	6794	MSKCC	GRCh37	19	1223105	1223105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	164	537	0	ENST00000326873.7:c.1042G>T	p.Asp348Tyr	p.D348Y	ENST00000326873	NM_000455.4	348	Gac/Tac																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6230694	6230694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	184	481	0	ENST00000252674.7:c.307G>A	p.Asp103Asn	p.D103N	ENST00000252674	NM_005934.3	103	Gac/Aac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101925	11101925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	172	458	0	ENST00000344626.4:c.1345G>A	p.Glu449Lys	p.E449K	ENST00000344626	NM_003072.3	449	Gag/Aag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289857	15289857	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	156	565	0	ENST00000263388.2:c.3697C>A	p.Leu1233Ile	p.L1233I	ENST00000263388	NM_000435.2	1233	Ctt/Att																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15300164	15300164	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	159	501	0	ENST00000263388.2:c.1112T>C	p.Val371Ala	p.V371A	ENST00000263388	NM_000435.2	371	gTg/gCg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218396	36218396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	151	485	0	ENST00000222270.7:c.4175C>A	p.Pro1392Gln	p.P1392Q	ENST00000222270	NM_014727.1	1392	cCg/cAg																																																																															
CD79A	973	MSKCC	GRCh37	19	42383119	42383119	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	35	381	0	ENST00000221972.3:c.139G>T	p.Gly47Trp	p.G47W	ENST00000221972	NM_021601.3	47	Ggg/Tgg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912885	50912885	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1363178844		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	141	370	0	ENST00000440232.2:c.2116G>A	p.Ala706Thr	p.A706T	ENST00000440232	NM_002691.3	706	Gcc/Acc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52724335	52724335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	49	489	0	ENST00000322088.6:c.1467G>A	p.Met489Ile	p.M489I	ENST00000322088	NM_014225.5	489	atG/atA																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29444422	29444422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	335	444	2	ENST00000544604.2:c.958G>A	p.Val320Met	p.V320M	ENST00000544604	NM_001206998.1	320	Gtg/Atg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37035147	37035147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs63751012		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	128	330	0	ENST00000231790.2:c.109G>T	p.Glu37Ter	p.E37*	ENST00000231790	NM_000249.3	37	Gag/Tag																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1805468	1805470	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	36	441	0	ENST00000260795.2:c.982_984del	p.Asn328del	p.N328del	ENST00000260795		327	cACAac/cac																																																																															
TERT	7015	MSKCC	GRCh37	5	1294267	1294267	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	140	517	0	ENST00000310581.5:c.734A>G	p.Glu245Gly	p.E245G	ENST00000310581	NM_198253.2	245	gAg/gGg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950592	38950592	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	108	462	0	ENST00000357387.3:c.3358T>A	p.Leu1120Ile	p.L1120I	ENST00000357387	NM_152756.3	1120	Tta/Ata																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032281	26032281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	40	436	0	ENST00000244661.2:c.8G>A	p.Arg3His	p.R3H	ENST00000244661	NM_003537.3	3	cGt/cAt																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225771	26225771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	183	587	1	ENST00000360408.1:c.389G>A	p.Arg130His	p.R130H	ENST00000360408	NM_003532.2	130	cGc/cAc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910684	29910684	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	40	804	0	ENST00000376809.5:c.224G>T	p.Trp75Leu	p.W75L	ENST00000376809	NM_002116.7	75	tGg/tTg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805994	32805994	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	151	460	0	ENST00000374899.4:c.17T>C	p.Leu6Pro	p.L6P	ENST00000374899	NM_018833.2	6	cTg/cCg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157470078	157470078	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	170	467	0	ENST00000346085.5:c.2872C>T	p.Gln958Ter	p.Q958*	ENST00000346085	NM_020732.3	958	Caa/Taa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162622264	162622264	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	38	427	0	ENST00000366898.1:c.433A>C	p.Ser145Arg	p.S145R	ENST00000366898	NM_004562.2	145	Agc/Cgc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38277082	38277082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1271245426		P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	121	418	2	ENST00000425967.3:c.1346C>T	p.Ala449Val	p.A449V	ENST00000425967	NM_001174067.1	449	gCc/gTc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223559	53223559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			55	138	222	0	ENST00000375401.3:c.3800G>A	p.Arg1267Lys	p.R1267K	ENST00000375401	NM_004187.3	1267	aGa/aAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587782082		P-0066683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	123	369	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0066683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	146	353	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0066683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	87	390	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	203	313	0	ENST00000281708.4:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000281708	NM_033632.3	545	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	128	304	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576370	67576370	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs540361957		P-0066683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	109	296	0	ENST00000274335.5:c.649G>A	p.Glu217Lys	p.E217K	ENST00000274335		217	Gaa/Aaa																																																																															
ATRX	546	MSKCC	GRCh37	X	76890137	76890137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	20	164	0	ENST00000373344.5:c.4757C>T	p.Pro1586Leu	p.P1586L	ENST00000373344	NM_000489.3	1586	cCa/cTa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675960	30675960	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775696423		P-0066683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	176	422	0	ENST00000376406.3:c.2396C>T	p.Pro799Leu	p.P799L	ENST00000376406	NM_014641.2	799	cCa/cTa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056604	26056605	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0066683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	59	410	1	ENST00000343677.2:c.52_53delinsTT	p.Ala18Phe	p.A18F	ENST00000343677	NM_005319.3	18	GCc/TTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092741	27092741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	112	383	0	ENST00000324856.7:c.2762G>A	p.Gly921Glu	p.G921E	ENST00000324856	NM_006015.4	921	gGg/gAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350929	89350929	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0066683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	80	338	0	ENST00000301030.4:c.2021T>A	p.Leu674Ter	p.L674*	ENST00000301030	NM_001256183.1	674	tTa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0066701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	115	466	1	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag																																																																															
FLT1	2321	MSKCC	GRCh37	13	28979946	28979946	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764045713		P-0066701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	77	334	0	ENST00000282397.4:c.1522C>T	p.Arg508Cys	p.R508C	ENST00000282397	NM_002019.4	508	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175349	112175350	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0066701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	104	376	0	ENST00000257430.4:c.4058_4059del	p.Glu1353ValfsTer21	p.E1353Vfs*21	ENST00000257430	NM_000038.5	1353	gAA/g																																																																															
BRAF	673	MSKCC	GRCh37	7	140501288	140501288	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs397507470		P-0066701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	151	231	0	ENST00000288602.6:c.784C>A	p.Gln262Lys	p.Q262K	ENST00000288602	NM_004333.4	262	Caa/Aaa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216482	2216482	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs372258317		P-0066701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	44	434	0	ENST00000398665.3:c.2126C>G	p.Pro709Arg	p.P709R	ENST00000398665	NM_032482.2	709	cCg/cGg																																																																															
APC	324	MSKCC	GRCh37	5	112170660	112170660	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0066701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	55	275	0	ENST00000257430.4:c.1756A>T	p.Lys586Ter	p.K586*	ENST00000257430	NM_000038.5	586	Aaa/Taa																																																																															
UPF1	5976	MSKCC	GRCh37	19	18974985	18974985	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1349791107		P-0066701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	32	388	1	ENST00000262803.5:c.2782C>T	p.Arg928Cys	p.R928C	ENST00000262803	NM_002911.3	928	Cgc/Tgc																																																																															
MYD88	4615	MSKCC	GRCh37	3	38181956	38181956	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	43	488	0	ENST00000396334.3:c.580C>A	p.Gln194Lys	p.Q194K	ENST00000396334	NM_002468.4	194	Caa/Aaa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920451	114920451	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0066701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	112	370	0	ENST00000543371.1:c.1391+1G>C		p.X464_splice	ENST00000543371	NM_001198531.1	464																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0066755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	165	548	6	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0066755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	240	418	1	ENST00000257430.4:c.3919dup	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0066755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	250	390	2	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105553	27105553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	139	409	5	ENST00000324856.7:c.5164C>T	p.Arg1722Ter	p.R1722*	ENST00000324856	NM_006015.4	1722	Cga/Tga																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0066755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	101	367	0				ENST00000310581	NM_198253.2																																																																																	
NOTCH2	4853	MSKCC	GRCh37	1	120459290	120459290	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1430961661		P-0066755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	113	452	3	ENST00000256646.2:c.6055C>T	p.Arg2019Trp	p.R2019W	ENST00000256646	NM_024408.3	2019	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	203	314	4	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21345972	21345972	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1346699262		P-0066755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	155	575	5	ENST00000215739.8:c.847C>T	p.Arg283Trp	p.R283W	ENST00000215739	NM_006767.3	283	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066762-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	119	253	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EP300	2033	MSKCC	GRCh37	22	41523747	41523747	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066762-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	174	443	0	ENST00000263253.7:c.1163G>T	p.Cys388Phe	p.C388F	ENST00000263253	NM_001429.3	388	tGc/tTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0066762-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	51	256	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112164646	112164646	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0066762-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	150	315	0	ENST00000257430.4:c.1720G>T	p.Glu574Ter	p.E574*	ENST00000257430	NM_000038.5	574	Gaa/Taa																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841252	15841252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066762-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	276	627	0	ENST00000307771.7:c.1336C>T	p.Arg446Trp	p.R446W	ENST00000307771	NM_005089.3	446	Cgg/Tgg																																																																															
CTR9	9646	MSKCC	GRCh37	11	10786176	10786176	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066762-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	84	421	0	ENST00000361367.2:c.1495A>G	p.Thr499Ala	p.T499A	ENST00000361367	NM_014633.3	499	Acg/Gcg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3824695	3824695	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0066762-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	69	450	0	ENST00000262367.5:c.2159-1G>A		p.X720_splice	ENST00000262367	NM_004380.2	720																																																																																
CALR	811	MSKCC	GRCh37	19	13051204	13051204	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066762-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	86	525	0	ENST00000316448.5:c.640T>C	p.Ser214Pro	p.S214P	ENST00000316448	NM_004343.3	214	Tca/Cca																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231707	36232376	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTATACCAGCCTGGAGGGTGTACCAGCCTGGAGGGTGTACCAGCCCCAAGTGGATGCACTTACTTCGAGGTTCTCGGGGCCCATCCACTGTGATTTTGATGGCTCTGTGGTAGGTGGCGACTTGCGGTGGGTTTGTGAAGACAGTGATGGTCAGAGTGAAGCTTTTCCCTGTGGGGACACGATAGAGAACAAAACAGAATGAGGTTGGTGGCCTGAACATATCTGTTGAATAACCAATCATTAATTTATGCTGTCCAGCCCTTCAGCACAAGTTACCAGTTTTGACAACACTCCCGGAATTTTGGCTTTGCTTCAATTCTGGAATACACACCTATGATAGTTGCCTAAGTGTAACACTTCACATAGTTATATGGCTTTAATGTAATCATCAATAAACAATACAAGATCAAGAAAGATTAGAATTTATTTTCTGTTAAGTCAGGATTTCCGGAAACCATAGAGTCAGATTGGCAGCTCTCCACTTCTGGTTCCCAACTTCCCTGCTCCCATCTTTCCCAATTATTTATAATTCAGGGCAAATAAGAGTAGAAGAAACCATATCCATCTTTCTCTTCTTACTTTGTACCTTTGAAGATCAGGAAAGATAGAATTTCTAAGTTTGAAAACAGGCTAAATTAGAATCATTCTGTCTATATTTTTAAAAGACGA	AGTATACCAGCCTGGAGGGTGTACCAGCCTGGAGGGTGTACCAGCCCCAAGTGGATGCACTTACTTCGAGGTTCTCGGGGCCCATCCACTGTGATTTTGATGGCTCTGTGGTAGGTGGCGACTTGCGGTGGGTTTGTGAAGACAGTGATGGTCAGAGTGAAGCTTTTCCCTGTGGGGACACGATAGAGAACAAAACAGAATGAGGTTGGTGGCCTGAACATATCTGTTGAATAACCAATCATTAATTTATGCTGTCCAGCCCTTCAGCACAAGTTACCAGTTTTGACAACACTCCCGGAATTTTGGCTTTGCTTCAATTCTGGAATACACACCTATGATAGTTGCCTAAGTGTAACACTTCACATAGTTATATGGCTTTAATGTAATCATCAATAAACAATACAAGATCAAGAAAGATTAGAATTTATTTTCTGTTAAGTCAGGATTTCCGGAAACCATAGAGTCAGATTGGCAGCTCTCCACTTCTGGTTCCCAACTTCCCTGCTCCCATCTTTCCCAATTATTTATAATTCAGGGCAAATAAGAGTAGAAGAAACCATATCCATCTTTCTCTTCTTACTTTGTACCTTTGAAGATCAGGAAAGATAGAATTTCTAAGTTTGAAAACAGGCTAAATTAGAATCATTCTGTCTATATTTTTAAAAGACGA	-			P-0066762-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	34	580	0	ENST00000300305.3:c.509-501_613+64del		p.X170_splice	ENST00000300305		170																																																																																
ATR	545	MSKCC	GRCh37	3	142281913	142281913	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066762-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	29	411	0	ENST00000350721.4:c.331G>T	p.Ala111Ser	p.A111S	ENST00000350721	NM_001184.3	111	Gca/Tca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			688	446	661	0	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101627	27101627	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1023142691		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	414	610	0	ENST00000324856.7:c.4909C>T	p.Arg1637Trp	p.R1637W	ENST00000324856	NM_006015.4	1637	Cgg/Tgg																																																																															
MPL	4352	MSKCC	GRCh37	1	43804359	43804359	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749391587		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	337	500	0	ENST00000372470.3:c.359G>A	p.Arg120Gln	p.R120Q	ENST00000372470	NM_005373.2	120	cGg/cAg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206652330	206652330	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1022	193	649	6	ENST00000367120.3:c.1042del	p.Arg348AspfsTer32	p.R348Dfs*32	ENST00000367120	NM_014002.3	346	gCc/gc																																																																															
RET	5979	MSKCC	GRCh37	10	43606766	43606766	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs539995816		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	368	725	0	ENST00000355710.3:c.1375G>A	p.Glu459Lys	p.E459K	ENST00000355710	NM_020975.4	459	Gag/Aag																																																																															
TET1	80312	MSKCC	GRCh37	10	70405743	70405743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	55	517	0	ENST00000373644.4:c.3257C>T	p.Ser1086Leu	p.S1086L	ENST00000373644	NM_030625.2	1086	tCg/tTg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88659788	88659789	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	173	316	0	ENST00000372037.3:c.441dup	p.Asp148Ter	p.D148*	ENST00000372037	NM_004329.2	145	-/T																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911638	114911638	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1427214163		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	320	413	0	ENST00000543371.1:c.1156C>T	p.Arg386Trp	p.R386W	ENST00000543371	NM_001198531.1	386	Cgg/Tgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	255	430	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
CCND1	595	MSKCC	GRCh37	11	69465988	69465990	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-	rs753296543		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			706	301	581	14	ENST00000227507.2:c.839_841del	p.Glu280del	p.E280del	ENST00000227507	NM_053056.2	276	GAG/-																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588241	69588241	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs533842802		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	280	440	0	ENST00000168712.1:c.457G>A	p.Asp153Asn	p.D153N	ENST00000168712	NM_002007.2	153	Gat/Aat																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625435	69625435	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376445217		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	354	522	0	ENST00000334134.2:c.358C>T	p.Arg120Trp	p.R120W	ENST00000334134	NM_005247.2	120	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	163	376	0	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118369217	118369217	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	344	550	0	ENST00000534358.1:c.5935C>T	p.Arg1979Ter	p.R1979*	ENST00000534358	NM_005933.3	1979	Cga/Tga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427491	427491	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774366438		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			796	235	592	0	ENST00000399788.2:c.2678G>A	p.Arg893Gln	p.R893Q	ENST00000399788	NM_001042603.1	893	cGa/cAa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	229	524	13	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	183	377	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
RAB35	11021	MSKCC	GRCh37	12	120541709	120541709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	376	600	0	ENST00000229340.5:c.148G>A	p.Val50Met	p.V50M	ENST00000229340	NM_006861.6	50	Gtg/Atg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	345	597	0	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563051	21563051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			768	182	615	0	ENST00000382592.4:c.868C>T	p.Pro290Ser	p.P290S	ENST00000382592	NM_014572.2	290	Ccc/Tcc																																																																															
RB1	5925	MSKCC	GRCh37	13	49039144	49039144	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764520289		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	156	311	1	ENST00000267163.4:c.2222G>A	p.Arg741His	p.R741H	ENST00000267163	NM_000321.2	741	cGt/cAt																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	382	610	0	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67655481	67655481	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs34679888		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	289	548	1	ENST00000264010.4:c.1348del	p.Ser450ValfsTer61	p.S450Vfs*61	ENST00000264010	NM_006565.3	448	cgA/cg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	380	626	2	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830616	72830616	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149779567		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	342	584	0	ENST00000268489.5:c.5965G>A	p.Gly1989Ser	p.G1989S	ENST00000268489	NM_006885.3	1989	Ggc/Agc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832575	72832575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751584946		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	319	458	0	ENST00000268489.5:c.4006G>A	p.Ala1336Thr	p.A1336T	ENST00000268489	NM_006885.3	1336	Gca/Aca																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544978	86544978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	244	462	0	ENST00000262426.4:c.803C>T	p.Ala268Val	p.A268V	ENST00000262426	NM_001451.2	268	gCg/gTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348058	89348058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs886568838		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	403	575	0	ENST00000301030.4:c.4892G>A	p.Arg1631Gln	p.R1631Q	ENST00000301030	NM_001256183.1	1631	cGg/cAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351514	89351514	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754010341		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	373	670	0	ENST00000301030.4:c.1436C>T	p.Ser479Leu	p.S479L	ENST00000301030	NM_001256183.1	479	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579399	7579401	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs878854068		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1016	104	659	0	ENST00000269305.4:c.286_288del	p.Ser96del	p.S96del	ENST00000269305	NM_001126112.2	96	TCT/-																																																																															
NF1	4763	MSKCC	GRCh37	17	29556292	29556292	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1251621684		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	384	546	3	ENST00000358273.4:c.2659G>A	p.Ala887Thr	p.A887T	ENST00000358273	NM_001042492.2	887	Gca/Aca																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	377	596	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
RARA	5914	MSKCC	GRCh37	17	38508715	38508715	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758973243		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	372	492	0	ENST00000254066.5:c.763G>A	p.Ala255Thr	p.A255T	ENST00000254066	NM_000964.3	255	Gcc/Acc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	840	664	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63526179	63526179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755508971		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	407	584	0	ENST00000307078.5:c.2447C>T	p.Ala816Val	p.A816V	ENST00000307078	NM_004655.3	816	gCg/gTg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs771001164		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	123	496	2	ENST00000307078.5:c.1214_1215del	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554672	63554672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			899	219	599	0	ENST00000307078.5:c.67C>T	p.Arg23Trp	p.R23W	ENST00000307078	NM_004655.3	23	Cgg/Tgg																																																																															
INSR	3643	MSKCC	GRCh37	19	7152776	7152776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			774	189	530	0	ENST00000302850.5:c.2192C>T	p.Thr731Met	p.T731M	ENST00000302850	NM_000208.2	731	aCg/aTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097625	11097625	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	606	556	0	ENST00000344626.4:c.810del	p.Met272CysfsTer31	p.M272Cfs*31	ENST00000344626	NM_003072.3	269	Ccc/cc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355326	15355326	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775700444		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	367	280	0	ENST00000263377.2:c.2297C>T	p.Pro766Leu	p.P766L	ENST00000263377	NM_058243.2	766	cCg/cTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375418	15375418	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1471575560		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	749	592	0	ENST00000263377.2:c.1009G>A	p.Asp337Asn	p.D337N	ENST00000263377	NM_058243.2	337	Gac/Aac																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257890	19257890	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1386180499		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			875	182	539	0	ENST00000162023.5:c.496C>T	p.Arg166Cys	p.R166C	ENST00000162023		166	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	354	583	0	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36215571	36215571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	335	417	0	ENST00000222270.7:c.3368G>A	p.Arg1123Gln	p.R1123Q	ENST00000222270	NM_014727.1	1123	cGg/cAg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52725442	52725442	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767299944		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	410	653	0	ENST00000322088.6:c.1609C>T	p.Arg537Cys	p.R537C	ENST00000322088	NM_014225.5	537	Cgc/Tgc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972669	25972669	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369844902		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	390	531	0	ENST00000435504.4:c.1756C>T	p.Arg586Cys	p.R586C	ENST00000435504		586	Cgt/Tgt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47656951	47656951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63749849		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	249	449	0	ENST00000233146.2:c.1147C>T	p.Arg383Ter	p.R383*	ENST00000233146	NM_000251.2	383	Cga/Tga																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	296	574	9	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			751	302	529	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024812	31024812	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	367	629	0	ENST00000375687.4:c.4297C>A	p.Gln1433Lys	p.Q1433K	ENST00000375687	NM_015338.5	1433	Caa/Aaa																																																																															
SRC	6714	MSKCC	GRCh37	20	36024634	36024634	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867236697		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	197	555	1	ENST00000358208.4:c.623G>A	p.Arg208His	p.R208H	ENST00000358208		208	cGc/cAc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39729866	39729868	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	343	545	0	ENST00000361337.2:c.1188_1190del	p.Pro397del	p.P397del	ENST00000361337	NM_003286.2	394	tCTCct/tct																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385153	41385153	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776806194		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	222	515	0	ENST00000373198.4:c.808C>T	p.Arg270Cys	p.R270C	ENST00000373198	NM_133170.3	270	Cgc/Tgc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21344765	21344765	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs869320686		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	376	530	1	ENST00000215739.8:c.742G>A	p.Gly248Arg	p.G248R	ENST00000215739	NM_006767.3	248	Gga/Aga																																																																															
EP300	2033	MSKCC	GRCh37	22	41553308	41553308	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1203250209		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	340	531	0	ENST00000263253.7:c.3397C>T	p.Arg1133Trp	p.R1133W	ENST00000263253	NM_001429.3	1133	Cgg/Tgg																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	351	636	3	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967254	134967254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758204492		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			826	159	611	1	ENST00000398015.3:c.2593C>T	p.Arg865Trp	p.R865W	ENST00000398015	NM_004441.4	865	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	130	572	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803419	1803419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	447	580	1	ENST00000260795.2:c.688G>A	p.Val230Met	p.V230M	ENST00000260795		230	Gtg/Atg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467573	66467573	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	300	573	0	ENST00000273854.3:c.696del	p.Lys232AsnfsTer36	p.K232Nfs*36	ENST00000273854	NM_004439.5	232	aaA/aa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524146	187524146	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368616927		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	309	529	0	ENST00000441802.2:c.11393C>T	p.Pro3798Leu	p.P3798L	ENST00000441802	NM_005245.3	3798	cCg/cTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524869	187524869	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	386	646	0	ENST00000441802.2:c.10811del	p.Lys3604SerfsTer2	p.K3604Sfs*2	ENST00000441802	NM_005245.3	3604	aAg/ag																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950546	38950546	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371456052		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	266	560	0	ENST00000357387.3:c.3404C>T	p.Thr1135Met	p.T1135M	ENST00000357387	NM_152756.3	1135	aCg/aTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56170877	56170877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	298	512	0	ENST00000399503.3:c.1705G>A	p.Val569Ile	p.V569I	ENST00000399503	NM_005921.1	569	Gtt/Att																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	135	463	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931452	131931452	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772667708		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	315	453	17	ENST00000265335.6:c.2165del	p.Lys722ArgfsTer14	p.K722Rfs*14	ENST00000265335		719	ctA/ct																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149516579	149516579	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1465066628		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	363	488	0	ENST00000261799.4:c.32C>T	p.Ala11Val	p.A11V	ENST00000261799	NM_002609.3	11	gCc/gTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180641	32180641	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1186558705		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	262	379	0	ENST00000375023.3:c.2486G>A	p.Arg829His	p.R829H	ENST00000375023	NM_004557.3	829	cGc/cAc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803059	32803059	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs61736923		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			872	213	528	0	ENST00000374899.4:c.817C>T	p.Arg273Ter	p.R273*	ENST00000374899	NM_018833.2	273	Cga/Tga																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			893	198	625	0	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289545	33289545	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1436067809		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			747	209	501	0	ENST00000374542.5:c.158C>T	p.Ser53Leu	p.S53L	ENST00000374542	NM_001141970.1	53	tCg/tTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528849	157528849	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761204913		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			849	217	630	0	ENST00000346085.5:c.6574G>A	p.Val2192Ile	p.V2192I	ENST00000346085	NM_020732.3	2192	Gta/Ata																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946306	2946306	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs573740263		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	281	508	0	ENST00000396946.4:c.3431G>A	p.Arg1144His	p.R1144H	ENST00000396946	NM_032415.4	1144	cGc/cAc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962960	2962960	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745349548		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	268	474	0	ENST00000396946.4:c.1948C>T	p.Arg650Trp	p.R650W	ENST00000396946	NM_032415.4	650	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55223603	55223603	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1343888047		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	155	461	0	ENST00000275493.2:c.970C>T	p.Arg324Cys	p.R324C	ENST00000275493	NM_005228.3	324	Cgc/Tgc																																																																															
SMO	6608	MSKCC	GRCh37	7	128850271	128850271	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1018551272		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	336	435	0	ENST00000249373.3:c.1534C>T	p.Arg512Cys	p.R512C	ENST00000249373	NM_005631.4	512	Cgc/Tgc																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	307	511	1	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			751	176	635	1	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500844	8500845	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	148	518	0	ENST00000356435.5:c.2037dup	p.Trp680MetfsTer3	p.W680Mfs*3	ENST00000356435		679	-/A																																																																															
FANCC	2176	MSKCC	GRCh37	9	97869475	97869475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149917017		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	400	552	0	ENST00000289081.3:c.1406C>T	p.Thr469Met	p.T469M	ENST00000289081	NM_000136.2	469	aCg/aTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399315	139399315	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369467132		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	140	493	2	ENST00000277541.6:c.4828G>A	p.Ala1610Thr	p.A1610T	ENST00000277541	NM_017617.3	1610	Gca/Aca																																																																															
GATA1	2623	MSKCC	GRCh37	X	48651631	48651631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	194	273	0	ENST00000376670.3:c.797C>T	p.Thr266Met	p.T266M	ENST00000376670	NM_002049.3	266	aCg/aTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228288	53228288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	384	262	0	ENST00000375401.3:c.2114G>A	p.Arg705His	p.R705H	ENST00000375401	NM_004187.3	705	cGc/cAc																																																																															
STK40	83931	MSKCC	GRCh37	1	36820890	36820890	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753697977		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	359	596	1	ENST00000373129.3:c.487G>A	p.Val163Ile	p.V163I	ENST00000373129	NM_032017.1	163	Gtc/Atc																																																																															
STK40	83931	MSKCC	GRCh37	1	36826927	36826927	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs12086307		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	275	482	0	ENST00000373129.3:c.7C>T	p.Arg3Trp	p.R3W	ENST00000373129	NM_032017.1	3	Cgg/Tgg																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165725	118165725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1211776583		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	438	649	0	ENST00000369448.3:c.235G>A	p.Val79Ile	p.V79I	ENST00000369448	NM_017709.3	79	Gtt/Att																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746095	162746095	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			813	344	585	0	ENST00000367921.3:c.2218T>C	p.Tyr740His	p.Y740H	ENST00000367921	NM_006182.2	740	Tat/Cat																																																																															
CDC73	79577	MSKCC	GRCh37	1	193091463	193091463	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	461	460	0	ENST00000367435.3:c.131+2T>C		p.X44_splice	ENST00000367435	NM_024529.4	44																																																																																
PARP1	142	MSKCC	GRCh37	1	226578283	226578283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			774	362	595	0	ENST00000366794.5:c.445C>T	p.Pro149Ser	p.P149S	ENST00000366794	NM_001618.3	149	Cca/Tca																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88681287	88681287	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	279	416	0	ENST00000372037.3:c.1177G>T	p.Glu393Ter	p.E393*	ENST00000372037	NM_004329.2	393	Gaa/Taa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64128026	64128026	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	371	600	1	ENST00000334205.4:c.428del	p.Gly143ValfsTer20	p.G143Vfs*20	ENST00000334205	NM_003942.2	142	Ggg/gg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435203	18435203	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	276	606	0	ENST00000266497.5:c.188T>C	p.Phe63Ser	p.F63S	ENST00000266497		63	tTt/tCt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244727	46244727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	339	644	0	ENST00000334344.6:c.2821C>T	p.Pro941Ser	p.P941S	ENST00000334344	NM_152641.2	941	Cca/Tca																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481633	56481633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			939	228	629	1	ENST00000267101.3:c.668C>A	p.Pro223His	p.P223H	ENST00000267101	NM_001982.3	223	cCc/cAc																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811645	102811645	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	320	598	0	ENST00000307046.8:c.539G>T	p.Arg180Met	p.R180M	ENST00000307046	NM_001111285.1	180	aGg/aTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29068976	29068976	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	204	406	0	ENST00000282397.4:c.5T>C	p.Val2Ala	p.V2A	ENST00000282397	NM_002019.4	2	gTc/gCc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434788	110434788	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	344	577	0	ENST00000375856.3:c.3613C>T	p.Arg1205Ter	p.R1205*	ENST00000375856	NM_003749.2	1205	Cga/Tga																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986953	36986953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	259	542	0	ENST00000354822.5:c.736del	p.Met246Ter	p.M246*	ENST00000354822	NM_001079668.2	246	Atg/tg																																																																															
USP8	9101	MSKCC	GRCh37	15	50773879	50773879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	134	583	1	ENST00000307179.4:c.1420G>A	p.Glu474Lys	p.E474K	ENST00000307179		474	Gaa/Aaa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472577	88472577	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	286	567	0	ENST00000360948.2:c.1978G>T	p.Ala660Ser	p.A660S	ENST00000360948	NM_001012338.2	660	Gcc/Tcc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857370	9857370	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	146	599	0	ENST00000330684.3:c.4031T>C	p.Phe1344Ser	p.F1344S	ENST00000330684	NM_001134407.1	1344	tTc/tCc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14042012	14042012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			815	189	571	0	ENST00000311895.7:c.2563del	p.Met855CysfsTer4	p.M855Cfs*4	ENST00000311895	NM_005236.2	853	ttA/tt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646734	23646734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	137	526	0	ENST00000261584.4:c.1133C>A	p.Pro378His	p.P378H	ENST00000261584	NM_024675.3	378	cCt/cAt																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7983163	7983163	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	280	452	0	ENST00000319144.4:c.851C>A	p.Pro284Gln	p.P284Q	ENST00000319144	NM_001139.2	284	cCa/cAa																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40456566	40456566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	448	599	0	ENST00000345506.4:c.1276C>T	p.Arg426Cys	p.R426C	ENST00000345506	NM_003152.3	426	Cgt/Tgt																																																																															
EZH1	2145	MSKCC	GRCh37	17	40871138	40871138	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	230	411	0	ENST00000428826.2:c.752A>G	p.Asp251Gly	p.D251G	ENST00000428826		251	gAt/gGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584764	48584764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			897	195	597	0	ENST00000342988.3:c.842C>A	p.Pro281His	p.P281H	ENST00000342988	NM_005359.5	281	cCt/cAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170522	11170522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	568	632	0	ENST00000344626.4:c.4729G>A	p.Glu1577Lys	p.E1577K	ENST00000344626	NM_003072.3	1577	Gag/Aag																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47491278	47491278	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771708442		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	322	464	1	ENST00000404338.3:c.3859G>A	p.Gly1287Arg	p.G1287R	ENST00000404338	NM_004491.4	1287	Ggg/Agg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503649	47503649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			829	171	590	0	ENST00000404338.3:c.4204C>T	p.Pro1402Ser	p.P1402S	ENST00000404338	NM_004491.4	1402	Ccc/Tcc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523037	25523037	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1438813586		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	328	569	0	ENST00000264709.3:c.148C>T	p.Arg50Trp	p.R50W	ENST00000264709	NM_175629.2	50	Cgg/Tgg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285256	212285256	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	215	502	0	ENST00000342788.4:c.3045T>A	p.Asp1015Glu	p.D1015E	ENST00000342788	NM_005235.2	1015	gaT/gaA																																																																															
SRC	6714	MSKCC	GRCh37	20	36030895	36030895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	356	463	0	ENST00000358208.4:c.1174G>A	p.Ala392Thr	p.A392T	ENST00000358208		392	Gca/Aca																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21350125	21350125	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752699291		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			780	179	559	0	ENST00000215739.8:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000215739	NM_006767.3	678	cGg/cAg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279819	29279819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	94	96	0	ENST00000544604.2:c.65del	p.Arg22ProfsTer100	p.R22Pfs*100	ENST00000544604	NM_001206998.1	22	cGc/cc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279819	29279819	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	19	96	0	ENST00000544604.2:c.65G>C	p.Arg22Pro	p.R22P	ENST00000544604	NM_001206998.1	22	cGc/cCc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446611	29446611	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	272	453	0	ENST00000544604.2:c.2442del	p.Pro815ArgfsTer11	p.P815Rfs*11	ENST00000544604	NM_001206998.1	814	ccA/cc																																																																															
EP300	2033	MSKCC	GRCh37	22	41573240	41573240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	387	651	0	ENST00000263253.7:c.5525G>T	p.Gly1842Val	p.G1842V	ENST00000263253	NM_001429.3	1842	gGg/gTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165909	47165909	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs778611476		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	330	589	0	ENST00000409792.3:c.217G>T	p.Val73Leu	p.V73L	ENST00000409792	NM_014159.6	73	Gtg/Ttg																																																																															
ATR	545	MSKCC	GRCh37	3	142188985	142188985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	72	438	0	ENST00000350721.4:c.6262C>T	p.Pro2088Ser	p.P2088S	ENST00000350721	NM_001184.3	2088	Cca/Tca																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1805506	1805506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	164	522	0	ENST00000260795.2:c.1018C>A	p.Leu340Met	p.L340M	ENST00000260795		340	Ctg/Atg																																																																															
KIT	3815	MSKCC	GRCh37	4	55595592	55595592	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	153	446	0	ENST00000288135.5:c.2082G>T	p.Gln694His	p.Q694H	ENST00000288135	NM_000222.2	694	caG/caT																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56171057	56171057	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			792	165	523	0	ENST00000399503.3:c.1885G>T	p.Gly629Ter	p.G629*	ENST00000399503	NM_005921.1	629	Gga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592109	67592109	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143171832		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	316	447	0	ENST00000274335.5:c.1925G>A	p.Arg642Gln	p.R642Q	ENST00000274335		642	cGa/cAa																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43746204	43746204	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367757959		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	342	594	0	ENST00000523873.1:c.323G>A	p.Arg108Gln	p.R108Q	ENST00000523873		108	cGg/cAg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555024	106555024	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367573477		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	401	602	0	ENST00000369096.4:c.2141C>T	p.Pro714Leu	p.P714L	ENST00000369096	NM_001198.3	714	cCg/cTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527329	157527329	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	305	530	1	ENST00000346085.5:c.5054A>T	p.Glu1685Val	p.E1685V	ENST00000346085	NM_020732.3	1685	gAg/gTg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080638	5080638	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs528871831		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	222	452	0	ENST00000381652.3:c.2389T>C	p.Ser797Pro	p.S797P	ENST00000381652	NM_004972.3	797	Tct/Cct																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209256	98209256	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	299	544	0	ENST00000331920.6:c.4282G>T	p.Glu1428Ter	p.E1428*	ENST00000331920	NM_000264.3	1428	Gaa/Taa																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128322030	128322030	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1243805016		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	302	494	0	ENST00000265960.3:c.730G>A	p.Asp244Asn	p.D244N	ENST00000265960	NM_001006617.1	244	Gat/Aat																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401089	139401089	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs767910707		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	333	561	0	ENST00000277541.6:c.3904C>T	p.Arg1302Cys	p.R1302C	ENST00000277541	NM_017617.3	1302	Cgc/Tgc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793289	139793289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	322	402	0	ENST00000247668.2:c.97C>A	p.Leu33Met	p.L33M	ENST00000247668	NM_021138.3	33	Ctg/Atg																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841253	15841253	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375322183		P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	226	289	0	ENST00000307771.7:c.1337G>A	p.Arg446Gln	p.R446Q	ENST00000307771	NM_005089.3	446	cGg/cAg																																																																															
MED12	9968	MSKCC	GRCh37	X	70349008	70349008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	356	255	0	ENST00000374080.3:c.3520C>T	p.Arg1174Cys	p.R1174C	ENST00000374080		1174	Cgc/Tgc																																																																															
MED12	9968	MSKCC	GRCh37	X	70354652	70354652	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	201	262	0	ENST00000374080.3:c.4817T>C	p.Met1606Thr	p.M1606T	ENST00000374080		1606	aTg/aCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0066777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	291	365	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056346	180056346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs186187161		P-0066777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	130	501	2	ENST00000261937.6:c.898G>A	p.Val300Ile	p.V300I	ENST00000261937	NM_182925.4	300	Gtc/Atc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0066777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	245	293	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2115961	2115961	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	169	398	0	ENST00000349721.2:c.3596T>C	p.Ile1199Thr	p.I1199T	ENST00000349721	NM_003070.3	1199	aTc/aCc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	432830	432830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	38	438	0	ENST00000399788.2:c.2086C>T	p.Arg696Trp	p.R696W	ENST00000399788	NM_001042603.1	696	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0066909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	279	458	1	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112175772	112175772	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	208	447	0	ENST00000257430.4:c.4483del	p.Ser1495ValfsTer12	p.S1495Vfs*12	ENST00000257430	NM_000038.5	1494	gAa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0066909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	223	334	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
APC	324	MSKCC	GRCh37	5	112174207	112174207	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	126	459	0	ENST00000257430.4:c.2917del	p.Tyr973MetfsTer7	p.Y973Mfs*7	ENST00000257430	NM_000038.5	972	ggT/gg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976856	2976857	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGA			P-0066909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	84	450	0	ENST00000396946.4:c.1153_1155dup	p.Ser385dup	p.S385dup	ENST00000396946	NM_032415.4	385	-/TCC																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0066939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	105	371	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
KDR	3791	MSKCC	GRCh37	4	55972855	55972855	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0066939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	61	326	0	ENST00000263923.4:c.1535A>C	p.Lys512Thr	p.K512T	ENST00000263923	NM_002253.2	512	aAa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577111	7577120	+	frameshift_variant	Frame_Shift_Del	DEL	GCACAAACAC	GCACAAACAC	-			P-0066939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	174	433	0	ENST00000269305.4:c.818_827del	p.Arg273ProfsTer69	p.R273Pfs*69	ENST00000269305	NM_001126112.2	273	cGTGTTTGTGCc/cc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39744053	39744053	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0066939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	67	359	0	ENST00000361337.2:c.1681G>T	p.Glu561Ter	p.E561*	ENST00000361337	NM_003286.2	561	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0066941-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	237	462	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
KDR	3791	MSKCC	GRCh37	4	55958791	55958791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066941-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	24	309	0	ENST00000263923.4:c.3062C>T	p.Ser1021Leu	p.S1021L	ENST00000263923	NM_002253.2	1021	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0066941-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	182	276	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23640560	23640560	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066941-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	98	332	0	ENST00000261584.4:c.2551A>G	p.Asn851Asp	p.N851D	ENST00000261584	NM_024675.3	851	Aac/Gac																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257144	16257144	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775010663		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	147	499	0	ENST00000375759.3:c.4409G>A	p.Arg1470Gln	p.R1470Q	ENST00000375759	NM_015001.2	1470	cGa/cAa																																																																															
MPL	4352	MSKCC	GRCh37	1	43805714	43805714	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs993195285		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	165	442	0	ENST00000372470.3:c.770G>A	p.Arg257His	p.R257H	ENST00000372470	NM_005373.2	257	cGc/cAc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241873	72241873	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1252345844		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	102	416	0	ENST00000357731.5:c.517C>T	p.Arg173Ter	p.R173*	ENST00000357731	NM_173808.2	173	Cga/Tga																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733503	85733503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	183	490	0	ENST00000370580.1:c.509C>A	p.Ser170Tyr	p.S170Y	ENST00000370580	NM_003921.4	170	tCt/tAt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746018	162746018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	142	493	0	ENST00000367921.3:c.2141G>A	p.Arg714Gln	p.R714Q	ENST00000367921	NM_006182.2	714	cGa/cAa																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518415	204518415	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs913129198		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	166	508	0	ENST00000367182.3:c.1078C>T	p.Pro360Ser	p.P360S	ENST00000367182	NM_001278516.1	360	Cct/Tct																																																																															
PARP1	142	MSKCC	GRCh37	1	226552729	226552729	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746139482		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	163	492	0	ENST00000366794.5:c.2632C>T	p.Arg878Trp	p.R878W	ENST00000366794	NM_001618.3	878	Cgg/Tgg																																																																															
FH	2271	MSKCC	GRCh37	1	241663891	241663891	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	67	158	0	ENST00000366560.3:c.1237-1G>T		p.X413_splice	ENST00000366560	NM_000143.3	413																																																																																
TET1	80312	MSKCC	GRCh37	10	70405608	70405608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	129	439	1	ENST00000373644.4:c.3122G>T	p.Arg1041Ile	p.R1041I	ENST00000373644	NM_030625.2	1041	aGa/aTa																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88677032	88677032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782400		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	43	153	1	ENST00000372037.3:c.817C>T	p.Arg273Ter	p.R273*	ENST00000372037	NM_004329.2	273	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685272	89685272	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G	rs748031178		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	111	342	0	ENST00000371953.3:c.167T>G	p.Phe56Cys	p.F56C	ENST00000371953	NM_000314.4	56	tTt/tGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	127	333	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112760262	112760262	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	77	331	0	ENST00000369452.4:c.931G>T	p.Glu311Ter	p.E311*	ENST00000369452	NM_007373.3	311	Gaa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264066389		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	123	432	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64132927	64132927	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145356210		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	147	452	0	ENST00000334205.4:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000334205	NM_003942.2	354	cGa/cAa																																																																															
SESN3	143686	MSKCC	GRCh37	11	94924618	94924618	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1400088899		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	153	495	0	ENST00000536441.1:c.292C>T	p.Arg98Cys	p.R98C	ENST00000536441	NM_144665.3	98	Cgc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108155078	108155078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	98	352	0	ENST00000278616.4:c.3871C>A	p.Leu1291Ile	p.L1291I	ENST00000278616	NM_000051.3	1291	Ctt/Att																																																																															
ATM	472	MSKCC	GRCh37	11	108160488	108160488	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs730881369		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	31	401	1	ENST00000278616.4:c.4396C>T	p.Arg1466Ter	p.R1466*	ENST00000278616	NM_000051.3	1466	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108196225	108196225	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	55	342	0	ENST00000278616.4:c.6761A>G	p.His2254Arg	p.H2254R	ENST00000278616	NM_000051.3	2254	cAc/cGc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118339501	118339501	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	140	426	0	ENST00000534358.1:c.444C>A	p.Phe148Leu	p.F148L	ENST00000534358	NM_005933.3	148	ttC/ttA																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552613	18552613	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1371859788		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	119	434	0	ENST00000266497.5:c.2024G>T	p.Arg675Ile	p.R675I	ENST00000266497		675	aGa/aTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	75	332	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431709	49431709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752428122		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	153	571	1	ENST00000301067.7:c.9430G>A	p.Ala3144Thr	p.A3144T	ENST00000301067	NM_003482.3	3144	Gca/Aca																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50488298	50488298	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	133	440	0	ENST00000394963.4:c.1212G>T	p.Met404Ile	p.M404I	ENST00000394963	NM_003076.4	404	atG/atT																																																																															
POLE	5426	MSKCC	GRCh37	12	133226041	133226041	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373170535		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	154	464	0	ENST00000320574.5:c.3856C>T	p.Arg1286Cys	p.R1286C	ENST00000320574	NM_006231.2	1286	Cgc/Tgc																																																																															
POLE	5426	MSKCC	GRCh37	12	133249857	133249857	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	131	404	0	ENST00000320574.5:c.1366G>C	p.Ala456Pro	p.A456P	ENST00000320574	NM_006231.2	456	Gcc/Ccc																																																																															
RB1	5925	MSKCC	GRCh37	13	48939073	48939073	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1208736713		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	64	280	0	ENST00000267163.4:c.905C>A	p.Ser302Tyr	p.S302Y	ENST00000267163	NM_000321.2	302	tCt/tAt																																																																															
RB1	5925	MSKCC	GRCh37	13	48942686	48942686	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767011440		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	87	335	0	ENST00000267163.4:c.1073G>A	p.Arg358Gln	p.R358Q	ENST00000267163	NM_000321.2	358	cGa/cAa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103506670	103506670	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1372959301		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	120	450	0	ENST00000355739.4:c.413G>A	p.Arg138Gln	p.R138Q	ENST00000355739	NM_000123.3	138	cGa/cAa																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023435	33023435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	156	460	0	ENST00000300177.4:c.544G>A	p.Asp182Asn	p.D182N	ENST00000300177	NM_001191322.1	182	Gat/Aat																																																																															
B2M	567	MSKCC	GRCh37	15	45007743	45007743	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	146	481	0	ENST00000558401.1:c.190G>T	p.Glu64Ter	p.E64*	ENST00000558401	NM_004048.2	64	Gag/Tag																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457330	67457330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			708	195	519	1	ENST00000327367.4:c.304G>A	p.Glu102Lys	p.E102K	ENST00000327367	NM_005902.3	102	Gag/Aag																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473723	67473723	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223740		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	153	428	0	ENST00000327367.4:c.803G>A	p.Arg268His	p.R268H	ENST00000327367	NM_005902.3	268	cGc/cAc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472489	88472489	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144852342		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	111	525	0	ENST00000360948.2:c.2066C>T	p.Ala689Val	p.A689V	ENST00000360948	NM_001012338.2	689	gCg/gTg																																																																															
BLM	641	MSKCC	GRCh37	15	91346808	91346808	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771776126		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	126	414	0	ENST00000355112.3:c.3416G>A	p.Arg1139Gln	p.R1139Q	ENST00000355112	NM_000057.2	1139	cGa/cAa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3794921	3794921	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1252438256		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	111	357	0	ENST00000262367.5:c.3956G>A	p.Arg1319Gln	p.R1319Q	ENST00000262367	NM_004380.2	1319	cGa/cAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828383	72828383	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1277890729		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	137	512	0	ENST00000268489.5:c.8198G>A	p.Arg2733His	p.R2733H	ENST00000268489	NM_006885.3	2733	cGt/cAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829497	72829497	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761486040		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	108	409	0	ENST00000268489.5:c.7084G>A	p.Asp2362Asn	p.D2362N	ENST00000268489	NM_006885.3	2362	Gac/Aac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993099	72993099	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	144	489	0	ENST00000268489.5:c.946A>C	p.Ile316Leu	p.I316L	ENST00000268489	NM_006885.3	316	Att/Ctt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81929510	81929510	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	145	492	0	ENST00000359376.3:c.1171G>T	p.Asp391Tyr	p.D391Y	ENST00000359376	NM_002661.3	391	Gac/Tac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438156	56438156	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs141997049		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	169	438	0	ENST00000407977.2:c.837C>A	p.Phe279Leu	p.F279L	ENST00000407977		279	ttC/ttA																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372045	45372045	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	131	408	0	ENST00000262160.6:c.1124A>C	p.Lys375Thr	p.K375T	ENST00000262160	NM_005901.5	375	aAa/aCa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375002	45375002	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	126	481	0	ENST00000262160.6:c.841G>T	p.Glu281Ter	p.E281*	ENST00000262160	NM_005901.5	281	Gaa/Taa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210815	2210815	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200004531		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	147	453	0	ENST00000398665.3:c.1312G>A	p.Ala438Thr	p.A438T	ENST00000398665	NM_032482.2	438	Gct/Act																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210733	5210733	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779302415		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	124	501	0	ENST00000357368.4:c.5318C>T	p.Ser1773Leu	p.S1773L	ENST00000357368	NM_002850.3	1773	tCg/tTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212224	5212224	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151279682		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	36	515	0	ENST00000357368.4:c.4807G>A	p.Asp1603Asn	p.D1603N	ENST00000357368	NM_002850.3	1603	Gac/Aac																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5265175	5265175	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147257283		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	164	455	0	ENST00000357368.4:c.412G>A	p.Asp138Asn	p.D138N	ENST00000357368	NM_002850.3	138	Gac/Aac																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10292746	10292746	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	121	304	0	ENST00000340748.4:c.88G>T	p.Asp30Tyr	p.D30Y	ENST00000340748		30	Gat/Tat																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47425290	47425290	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1178800275		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	188	526	0	ENST00000404338.3:c.3358C>T	p.Arg1120Trp	p.R1120W	ENST00000404338	NM_004491.4	1120	Cgg/Tgg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068357	26068357	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	173	289	0	ENST00000435504.4:c.133G>T	p.Glu45Ter	p.E45*	ENST00000435504		45	Gaa/Taa																																																																															
ALK	238	MSKCC	GRCh37	2	29606678	29606678	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs188859061		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	129	473	0	ENST00000389048.3:c.1202G>A	p.Arg401Gln	p.R401Q	ENST00000389048	NM_004304.4	401	cGa/cAa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	98	356	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520009		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	14	426	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61724120	61724120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781425578		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	142	389	0	ENST00000401558.2:c.782G>A	p.Arg261Gln	p.R261Q	ENST00000401558	NM_003400.3	261	cGa/cAa																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111921750	111921750	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185078669		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	140	438	0	ENST00000393256.3:c.539G>A	p.Arg180Gln	p.R180Q	ENST00000393256	NM_006538.4	180	cGa/cAa																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128038133	128038133	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1369244363		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	114	363	0	ENST00000285398.2:c.1417G>A	p.Glu473Lys	p.E473K	ENST00000285398	NM_000122.1	473	Gaa/Aaa																																																																															
CASP8	841	MSKCC	GRCh37	2	202131192	202131192	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	105	427	0	ENST00000358485.4:c.160C>A	p.Leu54Ile	p.L54I	ENST00000358485	NM_001080125.1	54	Ctc/Atc																																																																															
CASP8	841	MSKCC	GRCh37	2	202136279	202136279	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	103	447	0	ENST00000358485.4:c.523G>T	p.Glu175Ter	p.E175*	ENST00000358485	NM_001080125.1	175	Gaa/Taa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212483964	212483964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	66	407	0	ENST00000342788.4:c.2239C>T	p.Pro747Ser	p.P747S	ENST00000342788	NM_005235.2	747	Cct/Tct																																																																															
CUL3	8452	MSKCC	GRCh37	2	225368470	225368470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	101	381	0	ENST00000264414.4:c.1276G>T	p.Asp426Tyr	p.D426Y	ENST00000264414	NM_003590.4	426	Gat/Tat																																																																															
ERG	2078	MSKCC	GRCh37	21	39775575	39775575	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	150	533	0	ENST00000288319.7:c.445G>T	p.Glu149Ter	p.E149*	ENST00000288319	NM_182918.3	149	Gaa/Taa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275192	41275192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	219	499	0	ENST00000349496.5:c.1358G>A	p.Arg453Gln	p.R453Q	ENST00000349496	NM_001904.3	453	cGg/cAg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47127805	47127805	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	150	410	0	ENST00000409792.3:c.5278-1G>T		p.X1760_splice	ENST00000409792	NM_014159.6	1760																																																																																
SETD2	29072	MSKCC	GRCh37	3	47164118	47164118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	115	456	0	ENST00000409792.3:c.2008G>T	p.Glu670Ter	p.E670*	ENST00000409792	NM_014159.6	670	Gaa/Taa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164366	47164366	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1299511576		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	41	446	0	ENST00000409792.3:c.1760C>A	p.Ser587Tyr	p.S587Y	ENST00000409792	NM_014159.6	587	tCt/tAt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643768	52643768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	137	448	0	ENST00000394830.3:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000394830	NM_018313.4	710	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670597	134670597	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1330628001		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	123	470	0	ENST00000398015.3:c.508C>T	p.Arg170Trp	p.R170W	ENST00000398015	NM_004441.4	170	Cgg/Tgg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138426050	138426050	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	97	350	0	ENST00000289153.2:c.1481A>C	p.Lys494Thr	p.K494T	ENST00000289153	NM_006219.2	494	aAa/aCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517202		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	127	464	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129932	55129934	+	missense_variant	Missense_Mutation	ONP	GAG	GAG	AAT			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	151	459	0	ENST00000257290.5:c.466_468delinsAAT	p.Glu156Asn	p.E156N	ENST00000257290	NM_006206.4	156	GAG/AAT																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133597	55133597	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	133	464	0	ENST00000257290.5:c.901G>T	p.Glu301Ter	p.E301*	ENST00000257290	NM_006206.4	301	Gaa/Taa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55136799	55136799	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	73	290	0	ENST00000257290.5:c.1122-1G>T		p.X374_splice	ENST00000257290	NM_006206.4	374																																																																																
KIT	3815	MSKCC	GRCh37	4	55604643	55604643	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745651409		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	128	434	0	ENST00000288135.5:c.2851G>A	p.Val951Ile	p.V951I	ENST00000288135	NM_000222.2	951	Gta/Ata																																																																															
TET2	54790	MSKCC	GRCh37	4	106156325	106156325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			750	55	566	0	ENST00000380013.4:c.1226C>A	p.Pro409His	p.P409H	ENST00000380013	NM_001127208.2	409	cCt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244184	153244184	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759610249		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	185	501	0	ENST00000281708.4:c.1973G>A	p.Arg658Gln	p.R658Q	ENST00000281708	NM_033632.3	658	cGa/cAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251990	153251990	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	106	372	0	ENST00000281708.4:c.1016G>T	p.Arg339Ile	p.R339I	ENST00000281708	NM_033632.3	339	aGa/aTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510219	187510219	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1276553545		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	137	424	1	ENST00000441802.2:c.13294G>A	p.Glu4432Lys	p.E4432K	ENST00000441802	NM_005245.3	4432	Gaa/Aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534362	187534362	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375701023		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	136	422	0	ENST00000441802.2:c.9364G>A	p.Ala3122Thr	p.A3122T	ENST00000441802	NM_005245.3	3122	Gcc/Acc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584530	187584530	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200633985		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	185	469	0	ENST00000441802.2:c.3503C>T	p.Ser1168Leu	p.S1168L	ENST00000441802	NM_005245.3	1168	tCg/tTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295845	1295845	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	179	608	0				ENST00000310581	NM_198253.2																																																																																	
DROSHA	29102	MSKCC	GRCh37	5	31409261	31409261	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	154	476	0	ENST00000344624.3:c.3756C>A	p.Phe1252Leu	p.F1252L	ENST00000344624		1252	ttC/ttA																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867477	35867477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	86	393	0	ENST00000303115.3:c.291G>T	p.Lys97Asn	p.K97N	ENST00000303115	NM_002185.3	97	aaG/aaT																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945757	38945757	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1032272899		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	107	419	0	ENST00000357387.3:c.4469C>T	p.Thr1490Met	p.T1490M	ENST00000357387	NM_152756.3	1490	aCg/aTg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38947466	38947466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	126	451	0	ENST00000357387.3:c.4214G>A	p.Arg1405Gln	p.R1405Q	ENST00000357387	NM_152756.3	1405	cGa/cAa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950648	38950648	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776074870		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	11	504	0	ENST00000357387.3:c.3302C>T	p.Ser1101Leu	p.S1101L	ENST00000357387	NM_152756.3	1101	tCg/tTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67590466	67590466	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	130	414	0	ENST00000274335.5:c.1528G>T	p.Glu510Ter	p.E510*	ENST00000274335		510	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112103015	112103015	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1064793535		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	138	415	0	ENST00000257430.4:c.350C>A	p.Ser117Ter	p.S117*	ENST00000257430	NM_000038.5	117	tCa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	125	382	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175103	112175103	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	78	460	0	ENST00000257430.4:c.3812T>G	p.Phe1271Cys	p.F1271C	ENST00000257430	NM_000038.5	1271	tTt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112175166	112175166	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371113837		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	111	453	0	ENST00000257430.4:c.3875C>T	p.Thr1292Met	p.T1292M	ENST00000257430	NM_000038.5	1292	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	162	530	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
IRF4	3662	MSKCC	GRCh37	6	407567	407567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	119	351	0	ENST00000380956.4:c.1325G>A	p.Arg442Lys	p.R442K	ENST00000380956	NM_001195286.1	442	aGa/aAa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323184	31323184	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2308488		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			817	194	601	0	ENST00000412585.2:c.805G>A	p.Ala269Thr	p.A269T	ENST00000412585	NM_005514.6	269	Gca/Aca																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555167	106555167	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747743863		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	152	491	1	ENST00000369096.4:c.2284G>A	p.Val762Met	p.V762M	ENST00000369096	NM_001198.3	762	Gtg/Atg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117663635	117663635	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs755903627		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	88	369	0	ENST00000368508.3:c.4597A>C	p.Lys1533Gln	p.K1533Q	ENST00000368508	NM_002944.2	1533	Aaa/Caa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199594	138199594	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	164	497	0	ENST00000237289.4:c.1012G>T	p.Glu338Ter	p.E338*	ENST00000237289	NM_001270507.1	338	Gaa/Taa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150022982	150022982	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	117	419	0	ENST00000253339.5:c.281C>A	p.Ser94Tyr	p.S94Y	ENST00000253339		94	tCt/tAt																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026397	6026397	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	59	222	0	ENST00000265849.7:c.1999G>T	p.Glu667Ter	p.E667*	ENST00000265849	NM_000535.5	667	Gag/Tag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508609	106508609	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	88	409	0	ENST00000359195.3:c.603G>A	p.Trp201Ter	p.W201*	ENST00000359195	NM_002649.2	201	tgG/tgA																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509539	106509539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	143	495	0	ENST00000359195.3:c.1533G>T	p.Glu511Asp	p.E511D	ENST00000359195	NM_002649.2	511	gaG/gaT																																																																															
EZH2	2146	MSKCC	GRCh37	7	148523708	148523708	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520183		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	106	374	0	ENST00000320356.2:c.745G>A	p.Glu249Lys	p.E249K	ENST00000320356	NM_004456.4	249	Gaa/Aaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879084	151879084	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	161	544	0	ENST00000262189.6:c.5861C>A	p.Ser1954Tyr	p.S1954Y	ENST00000262189	NM_170606.2	1954	tCt/tAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69012038	69012038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	86	406	0	ENST00000288368.4:c.2675G>T	p.Arg892Ile	p.R892I	ENST00000288368	NM_024870.2	892	aGa/aTa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964514	70964514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762086448		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	153	555	2	ENST00000276594.2:c.1514G>A	p.Arg505His	p.R505H	ENST00000276594	NM_024504.3	505	cGc/cAc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141569503	141569503	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	129	386	0	ENST00000220592.5:c.781G>T	p.Glu261Ter	p.E261*	ENST00000220592	NM_012154.3	261	Gaa/Taa																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2191349	2191349	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs747368303		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	133	525	0	ENST00000349721.2:c.4678C>T	p.Arg1560Ter	p.R1560*	ENST00000349721	NM_003070.3	1560	Cga/Tga																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054649	5054649	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373174105		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	105	455	0	ENST00000381652.3:c.701G>A	p.Arg234His	p.R234H	ENST00000381652	NM_004972.3	234	cGc/cAc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090791	5090791	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	106	463	0	ENST00000381652.3:c.2939G>T	p.Arg980Ile	p.R980I	ENST00000381652	NM_004972.3	980	aGa/aTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465627	8465627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	57	433	0	ENST00000356435.5:c.3553G>A	p.Glu1185Lys	p.E1185K	ENST00000356435		1185	Gaa/Aaa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239843	98239843	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1398130707		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	123	361	0	ENST00000331920.6:c.1489G>A	p.Ala497Thr	p.A497T	ENST00000331920	NM_000264.3	497	Gct/Act																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128432165	128432165	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1371596131		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	82	317	0	ENST00000265960.3:c.281G>A	p.Arg94Gln	p.R94Q	ENST00000265960	NM_001006617.1	94	cGa/cAa																																																																															
ATRX	546	MSKCC	GRCh37	X	76875930	76875930	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	99	217	0	ENST00000373344.5:c.5205G>T	p.Met1735Ile	p.M1735I	ENST00000373344	NM_000489.3	1735	atG/atT																																																																															
ATRX	546	MSKCC	GRCh37	X	76938028	76938028	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143413618		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	15	270	1	ENST00000373344.5:c.2720G>A	p.Arg907Gln	p.R907Q	ENST00000373344	NM_000489.3	907	cGa/cAa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123220477	123220477	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1372684971		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	136	232	0	ENST00000218089.9:c.3134G>A	p.Arg1045Gln	p.R1045Q	ENST00000218089	NM_001042749.1	1045	cGa/cAa																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074308	8074308	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	198	507	0	ENST00000377482.5:c.351A>C	p.Lys117Asn	p.K117N	ENST00000377482	NM_018948.3	117	aaA/aaC																																																																															
MTOR	2475	MSKCC	GRCh37	1	11177109	11177109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	119	376	0	ENST00000361445.4:c.6968C>A	p.Ser2323Tyr	p.S2323Y	ENST00000361445	NM_004958.3	2323	tCt/tAt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11307976	11307976	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	179	445	0	ENST00000361445.4:c.1016A>G	p.His339Arg	p.H339R	ENST00000361445	NM_004958.3	339	cAc/cGc																																																																															
MAD2L2	10459	MSKCC	GRCh37	1	11736936	11736936	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	118	404	0	ENST00000235310.3:c.301G>T	p.Glu101Ter	p.E101*	ENST00000235310		101	Gag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255568	16255568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs956946321		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	43	463	0	ENST00000375759.3:c.2833C>T	p.Leu945Phe	p.L945F	ENST00000375759	NM_015001.2	945	Ctt/Ttt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27059192	27059192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	137	341	0	ENST00000324856.7:c.1829C>T	p.Ser610Phe	p.S610F	ENST00000324856	NM_006015.4	610	tCt/tTt																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363236	40363236	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	152	503	0	ENST00000397332.2:c.993C>A	p.Phe331Leu	p.F331L	ENST00000397332	NM_001033082.2	331	ttC/ttA																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78425883	78425883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	138	462	0	ENST00000370768.2:c.1562C>T	p.Ala521Val	p.A521V	ENST00000370768	NM_003902.3	521	gCt/gTt																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150913815	150913815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	121	332	0	ENST00000271640.5:c.458C>T	p.Ala153Val	p.A153V	ENST00000271640	NM_001145415.1	153	gCt/gTt																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150915099	150915099	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371182642		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	150	465	0	ENST00000271640.5:c.608G>A	p.Arg203Gln	p.R203Q	ENST00000271640	NM_001145415.1	203	cGa/cAa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176104197	176104197	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	104	360	0	ENST00000367669.3:c.917T>C	p.Val306Ala	p.V306A	ENST00000367669	NM_022457.5	306	gTc/gCc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63700053	63700053	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	193	409	0	ENST00000279873.7:c.388A>C	p.Lys130Gln	p.K130Q	ENST00000279873	NM_032199.2	130	Aaa/Caa																																																																															
APLNR	187	MSKCC	GRCh37	11	57004162	57004162	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	136	460	0	ENST00000257254.3:c.317G>T	p.Ser106Ile	p.S106I	ENST00000257254		106	aGc/aTc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94170371	94170371	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745614941		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	65	274	0	ENST00000323929.3:c.1898G>A	p.Arg633Gln	p.R633Q	ENST00000323929	NM_005591.3	633	cGa/cAa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94194110	94194110	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773469981		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	76	298	0	ENST00000323929.3:c.1318G>A	p.Ala440Thr	p.A440T	ENST00000323929	NM_005591.3	440	Gca/Aca																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94212851	94212851	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368403414		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	77	369	0	ENST00000323929.3:c.391G>A	p.Asp131Asn	p.D131N	ENST00000323929	NM_005591.3	131	Gat/Aat																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343711	118343711	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	150	429	0	ENST00000534358.1:c.1837C>T	p.Arg613Ter	p.R613*	ENST00000534358	NM_005933.3	613	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376311	118376311	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	148	508	0	ENST00000534358.1:c.9704A>C	p.Lys3235Thr	p.K3235T	ENST00000534358	NM_005933.3	3235	aAa/aCa																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125513761	125513761	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	116	448	0	ENST00000428830.2:c.889A>T	p.Asn297Tyr	p.N297Y	ENST00000428830	NM_001114121.2	297	Aat/Tat																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125514053	125514053	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	103	508	0	ENST00000428830.2:c.991A>C	p.Ser331Arg	p.S331R	ENST00000428830	NM_001114121.2	331	Agc/Cgc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552625	18552625	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	155	438	0	ENST00000266497.5:c.2036T>G	p.Phe679Cys	p.F679C	ENST00000266497		679	tTt/tGt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21636322	21636322	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	83	405	0	ENST00000421138.2:c.688G>T	p.Asp230Tyr	p.D230Y	ENST00000421138		230	Gat/Tat																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231331	46231331	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	127	416	0	ENST00000334344.6:c.1171A>G	p.Ile391Val	p.I391V	ENST00000334344	NM_152641.2	391	Att/Gtt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28644727	28644727	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	128	416	0	ENST00000241453.7:c.66del	p.Phe22LeufsTer11	p.F22Lfs*11	ENST00000241453	NM_004119.2	22	ttT/tt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906931	32906931	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	137	471	0	ENST00000380152.3:c.1316T>G	p.Phe439Cys	p.F439C	ENST00000380152		439	tTt/tGt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103506181	103506181	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	127	385	0	ENST00000355739.4:c.339T>G	p.Phe113Leu	p.F113L	ENST00000355739	NM_000123.3	113	ttT/ttG																																																																															
DICER1	23405	MSKCC	GRCh37	14	95574747	95574747	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1131691210		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	113	451	0	ENST00000343455.3:c.2350G>T	p.Glu784Ter	p.E784*	ENST00000343455	NM_177438.2	784	Gaa/Taa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95595941	95595941	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749484792		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	101	404	0	ENST00000343455.3:c.602G>A	p.Arg201His	p.R201H	ENST00000343455	NM_177438.2	201	cGc/cAc																																																																															
RAD51	5888	MSKCC	GRCh37	15	41023252	41023252	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	100	365	0	ENST00000267868.3:c.897-1G>T		p.X299_splice	ENST00000267868	NM_002875.4	299																																																																																
MGA	23269	MSKCC	GRCh37	15	42042423	42042423	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	176	484	0	ENST00000219905.7:c.6618G>T	p.Lys2206Asn	p.K2206N	ENST00000219905	NM_001164273.1	2206	aaG/aaT																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748744	43748744	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs753789253		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	137	504	0	ENST00000382044.4:c.2062A>C	p.Asn688His	p.N688H	ENST00000382044	NM_001141980.1	688	Aat/Cat																																																																															
B2M	567	MSKCC	GRCh37	15	45007799	45007799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	159	472	0	ENST00000558401.1:c.246C>A	p.Phe82Leu	p.F82L	ENST00000558401	NM_004048.2	82	ttC/ttA																																																																															
USP8	9101	MSKCC	GRCh37	15	50757338	50757338	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	26	129	0	ENST00000307179.4:c.636T>A	p.Asp212Glu	p.D212E	ENST00000307179		212	gaT/gaA																																																																															
USP8	9101	MSKCC	GRCh37	15	50757355	50757355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			70	16	56	0	ENST00000307179.4:c.653C>T	p.Ser218Phe	p.S218F	ENST00000307179		218	tCt/tTt																																																																															
USP8	9101	MSKCC	GRCh37	15	50788096	50788096	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	83	343	0	ENST00000307179.4:c.2710T>G	p.Phe904Val	p.F904V	ENST00000307179		904	Ttt/Gtt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99454570	99454570	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	41	432	0	ENST00000268035.6:c.1489T>A	p.Ser497Thr	p.S497T	ENST00000268035	NM_000875.3	497	Tcc/Acc																																																																															
CDH1	999	MSKCC	GRCh37	16	68857314	68857314	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747235838		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	140	378	0	ENST00000261769.5:c.1949T>C	p.Ile650Thr	p.I650T	ENST00000261769	NM_004360.3	650	aTc/aCc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351594	89351594	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	160	535	0	ENST00000301030.4:c.1356T>G	p.Asn452Lys	p.N452K	ENST00000301030	NM_001256183.1	452	aaT/aaG																																																																															
FANCA	2175	MSKCC	GRCh37	16	89813006	89813006	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	164	429	0	ENST00000389301.3:c.3499T>G	p.Leu1167Val	p.L1167V	ENST00000389301	NM_000135.2	1167	Ttg/Gtg																																																																															
NF1	4763	MSKCC	GRCh37	17	29677314	29677314	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	78	329	0	ENST00000358273.4:c.7435C>A	p.His2479Asn	p.H2479N	ENST00000358273	NM_001042492.2	2479	Cat/Aat																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679514	33679514	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs939685161		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	109	276	0	ENST00000308377.4:c.2567G>T	p.Arg856Leu	p.R856L	ENST00000308377	NM_152270.3	856	cGa/cTa																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33680112	33680112	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	51	273	0	ENST00000308377.4:c.1969G>T	p.Glu657Ter	p.E657*	ENST00000308377	NM_152270.3	657	Gaa/Taa																																																																															
EZH1	2145	MSKCC	GRCh37	17	40864329	40864329	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	149	447	0	ENST00000428826.2:c.1379T>C	p.Leu460Pro	p.L460P	ENST00000428826		460	cTg/cCg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245425	41245425	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs80357182		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	141	517	0	ENST00000357654.3:c.2123C>A	p.Ser708Tyr	p.S708Y	ENST00000357654	NM_007294.3	708	tCt/tAt																																																																															
CD79B	974	MSKCC	GRCh37	17	62006834	62006834	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	128	499	0	ENST00000392795.3:c.554A>G	p.Asp185Gly	p.D185G	ENST00000392795	NM_001039933.1	185	gAt/gGt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39584329	39584329	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	107	420	0	ENST00000262039.4:c.994A>C	p.Lys332Gln	p.K332Q	ENST00000262039	NM_002647.2	332	Aaa/Caa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15379822	15379822	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	165	425	0	ENST00000263377.2:c.317A>G	p.Asp106Gly	p.D106G	ENST00000263377	NM_058243.2	106	gAt/gGt																																																																															
ALK	238	MSKCC	GRCh37	2	29462559	29462559	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	122	405	0	ENST00000389048.3:c.2342A>G	p.Asp781Gly	p.D781G	ENST00000389048	NM_004304.4	781	gAc/gGc																																																																															
REL	5966	MSKCC	GRCh37	2	61145606	61145606	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs766677940		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	115	456	0	ENST00000295025.8:c.718G>T	p.Val240Leu	p.V240L	ENST00000295025	NM_002908.2	240	Gta/Tta																																																																															
XPO1	7514	MSKCC	GRCh37	2	61712937	61712937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	133	403	0	ENST00000401558.2:c.2474C>T	p.Ala825Val	p.A825V	ENST00000401558	NM_003400.3	825	gCt/gTt																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630589	67630589	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1345206133		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	162	506	0	ENST00000272342.5:c.775A>G	p.Thr259Ala	p.T259A	ENST00000272342	NM_019002.3	259	Acc/Gcc																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736148	204736148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	115	479	0	ENST00000302823.3:c.505G>A	p.Ala169Thr	p.A169T	ENST00000302823	NM_005214.4	169	Gca/Aca																																																																															
PAK7	57144	MSKCC	GRCh37	20	9543625	9543625	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	98	464	0	ENST00000353224.5:c.1529A>G	p.Tyr510Cys	p.Y510C	ENST00000353224	NM_177990.2	510	tAc/tGc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31020738	31020738	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	112	423	0	ENST00000375687.4:c.1035G>T	p.Lys345Asn	p.K345N	ENST00000375687	NM_015338.5	345	aaG/aaT																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31386297	31386297	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1300094609		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	41	493	0	ENST00000328111.2:c.1522G>T	p.Val508Leu	p.V508L	ENST00000328111	NM_006892.3	508	Gtg/Ttg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39704921	39704921	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778237366		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	137	479	0	ENST00000361337.2:c.266G>A	p.Arg89Gln	p.R89Q	ENST00000361337	NM_003286.2	89	cGa/cAa																																																																															
TOP1	7150	MSKCC	GRCh37	20	39709875	39709875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	110	328	0	ENST00000361337.2:c.502G>A	p.Glu168Lys	p.E168K	ENST00000361337	NM_003286.2	168	Gaa/Aaa																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288152	21288152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	188	462	0	ENST00000354336.3:c.397G>T	p.Asp133Tyr	p.D133Y	ENST00000354336	NM_005207.3	133	Gat/Tat																																																																															
EP300	2033	MSKCC	GRCh37	22	41513431	41513431	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752713674		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	149	471	0	ENST00000263253.7:c.335G>A	p.Ser112Asn	p.S112N	ENST00000263253	NM_001429.3	112	aGt/aAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125638	47125638	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs138568145		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	160	483	0	ENST00000409792.3:c.5632T>C	p.Phe1878Leu	p.F1878L	ENST00000409792	NM_014159.6	1878	Ttt/Ctt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47144864	47144864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	109	415	0	ENST00000409792.3:c.4889G>T	p.Ser1630Ile	p.S1630I	ENST00000409792	NM_014159.6	1630	aGc/aTc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637695	52637695	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	82	394	0	ENST00000394830.3:c.2621A>C	p.Lys874Thr	p.K874T	ENST00000394830	NM_018313.4	874	aAa/aCa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52696238	52696238	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	136	484	0	ENST00000394830.3:c.439A>G	p.Thr147Ala	p.T147A	ENST00000394830	NM_018313.4	147	Aca/Gca																																																																															
MITF	4286	MSKCC	GRCh37	3	70008431	70008431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	129	385	0	ENST00000352241.4:c.1021C>T	p.Arg341Cys	p.R341C	ENST00000352241	NM_198159.2	341	Cgc/Tgc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799436	72799436	+	stop_lost	Nonstop_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	160	410	0	ENST00000325599.8:c.1733G>T	p.Ter578LeuextTer9	p.*578Lext*9	ENST00000325599	NM_018130.2	578	tGa/tTa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259557	89259557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	137	501	0	ENST00000336596.2:c.701C>A	p.Ser234Tyr	p.S234Y	ENST00000336596	NM_005233.5	234	tCt/tAt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468528	89468528	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1489618254		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	35	391	0	ENST00000336596.2:c.2062G>A	p.Val688Ile	p.V688I	ENST00000336596	NM_005233.5	688	Gtt/Att																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480298	89480298	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	27	376	0	ENST00000336596.2:c.2137-2A>G		p.X713_splice	ENST00000336596	NM_005233.5	713																																																																																
PIK3CB	5291	MSKCC	GRCh37	3	138374266	138374266	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	118	378	0	ENST00000289153.2:c.3178A>G	p.Met1060Val	p.M1060V	ENST00000289153	NM_006219.2	1060	Atg/Gtg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170015132	170015132	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	166	420	0	ENST00000295797.4:c.1538T>G	p.Phe513Cys	p.F513C	ENST00000295797	NM_002740.5	513	tTt/tGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178943809	178943809	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	100	358	0	ENST00000263967.3:c.2476A>C	p.Asn826His	p.N826H	ENST00000263967	NM_006218.2	826	Aat/Cat																																																																															
TP63	8626	MSKCC	GRCh37	3	189455609	189455609	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	134	448	0	ENST00000264731.3:c.143A>C	p.Glu48Ala	p.E48A	ENST00000264731	NM_003722.4	48	gAa/gCa																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749415	41749415	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	96	313	0	ENST00000226382.2:c.380C>A	p.Thr127Asn	p.T127N	ENST00000226382	NM_003924.3	127	aCt/aAt																																																																															
KIT	3815	MSKCC	GRCh37	4	55592115	55592115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	109	378	0	ENST00000288135.5:c.1439C>A	p.Ser480Tyr	p.S480Y	ENST00000288135	NM_000222.2	480	tCt/tAt																																																																															
KDR	3791	MSKCC	GRCh37	4	55964394	55964394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	114	466	0	ENST00000263923.4:c.2419G>A	p.Asp807Asn	p.D807N	ENST00000263923	NM_002253.2	807	Gat/Aat																																																																															
KDR	3791	MSKCC	GRCh37	4	55976642	55976642	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	134	447	0	ENST00000263923.4:c.1183A>C	p.Asn395His	p.N395H	ENST00000263923	NM_002253.2	395	Aat/Cat																																																																															
REST	5978	MSKCC	GRCh37	4	57796501	57796501	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs749881609		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	129	554	0	ENST00000309042.7:c.1477C>T	p.Arg493Ter	p.R493*	ENST00000309042	NM_005612.4	493	Cga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230870	66230870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	84	418	0	ENST00000273854.3:c.2101G>T	p.Glu701Ter	p.E701*	ENST00000273854	NM_004439.5	701	Gaa/Taa																																																																															
GAB1	2549	MSKCC	GRCh37	4	144390320	144390320	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757720830		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	128	422	0	ENST00000262994.4:c.2063C>T	p.Thr688Met	p.T688M	ENST00000262994	NM_002039.3	688	aCg/aTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332762	153332762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	159	558	0	ENST00000281708.4:c.194G>A	p.Arg65Lys	p.R65K	ENST00000281708	NM_033632.3	65	aGa/aAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549905	187549905	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	130	354	0	ENST00000441802.2:c.4336G>T	p.Val1446Leu	p.V1446L	ENST00000441802	NM_005245.3	1446	Gta/Tta																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584515	187584515	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	177	461	0	ENST00000441802.2:c.3518A>C	p.Lys1173Thr	p.K1173T	ENST00000441802	NM_005245.3	1173	aAg/aCg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35861079	35861079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769426499		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	214	429	0	ENST00000303115.3:c.208G>A	p.Glu70Lys	p.E70K	ENST00000303115	NM_002185.3	70	Gaa/Aaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161693	56161693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	108	399	0	ENST00000399503.3:c.1190G>T	p.Ser397Ile	p.S397I	ENST00000399503	NM_005921.1	397	aGc/aTc																																																																															
MSH3	4437	MSKCC	GRCh37	5	80063769	80063769	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	106	358	0	ENST00000265081.6:c.1914C>A	p.Phe638Leu	p.F638L	ENST00000265081	NM_002439.4	638	ttC/ttA																																																																															
RASA1	5921	MSKCC	GRCh37	5	86670084	86670084	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	86	375	0	ENST00000274376.6:c.1881A>C	p.Lys627Asn	p.K627N	ENST00000274376	NM_002890.2	627	aaA/aaC																																																																															
NPM1	4869	MSKCC	GRCh37	5	170818360	170818360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	71	184	0	ENST00000296930.5:c.190G>A	p.Ala64Thr	p.A64T	ENST00000296930	NM_002520.6	64	Gca/Aca																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058713	180058713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777334601		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	135	436	0	ENST00000261937.6:c.124G>A	p.Asp42Asn	p.D42N	ENST00000261937	NM_182925.4	42	Gac/Aac																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005679	150005679	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	137	478	0	ENST00000253339.5:c.546A>C	p.Lys182Asn	p.K182N	ENST00000253339		182	aaA/aaC																																																																															
POT1	25913	MSKCC	GRCh37	7	124503691	124503691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	89	319	1	ENST00000357628.3:c.259C>A	p.Gln87Lys	p.Q87K	ENST00000357628	NM_015450.2	87	Caa/Aaa																																																																															
EZH2	2146	MSKCC	GRCh37	7	148544359	148544359	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1400051032		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	134	386	0	ENST00000320356.2:c.32G>A	p.Gly11Glu	p.G11E	ENST00000320356	NM_004456.4	11	gGa/gAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151902278	151902278	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	34	107	0	ENST00000262189.6:c.3874C>T	p.Arg1292Ter	p.R1292*	ENST00000262189	NM_170606.2	1292	Cga/Tga																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345857	152345857	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	102	454	0	ENST00000359321.1:c.713G>T	p.Arg238Met	p.R238M	ENST00000359321	NM_005431.1	238	aGg/aTg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187135	38187135	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1356401338		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	150	402	0	ENST00000317025.8:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000317025	NM_023034.1	448	Cgg/Tgg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69005937	69005937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	92	422	0	ENST00000288368.4:c.2348C>A	p.Ala783Asp	p.A783D	ENST00000288368	NM_024870.2	783	gCt/gAt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978540	70978540	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	152	477	0	ENST00000276594.2:c.1113G>T	p.Glu371Asp	p.E371D	ENST00000276594	NM_024504.3	371	gaG/gaT																																																																															
NBN	4683	MSKCC	GRCh37	8	90965606	90965606	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	88	470	0	ENST00000265433.3:c.1711A>C	p.Lys571Gln	p.K571Q	ENST00000265433	NM_002485.4	571	Aaa/Caa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738125	145738125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	166	525	0	ENST00000428558.2:c.2785C>A	p.Leu929Met	p.L929M	ENST00000428558	NM_004260.3	929	Ctg/Atg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2104017	2104017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	102	360	0	ENST00000349721.2:c.3140G>A	p.Arg1047Gln	p.R1047Q	ENST00000349721	NM_003070.3	1047	cGg/cAg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2182150	2182150	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1217286722		P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	97	332	0	ENST00000349721.2:c.4369C>T	p.Arg1457Cys	p.R1457C	ENST00000349721	NM_003070.3	1457	Cgt/Tgt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080300	5080300	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	98	396	0	ENST00000381652.3:c.2203G>T	p.Asp735Tyr	p.D735Y	ENST00000381652	NM_004972.3	735	Gac/Tac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404588	8404588	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	83	443	0	ENST00000356435.5:c.4159G>C	p.Ala1387Pro	p.A1387P	ENST00000356435		1387	Gcg/Ccg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636738	8636738	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	122	384	0	ENST00000356435.5:c.171G>A	p.Trp57Ter	p.W57*	ENST00000356435		57	tgG/tgA																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20150371	20150371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	78	176	0	ENST00000379607.5:c.266C>T	p.Ala89Val	p.A89V	ENST00000379607	NM_001412.3	89	gCt/gTt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39916574	39916574	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	152	197	0	ENST00000378444.4:c.4429G>T	p.Glu1477Ter	p.E1477*	ENST00000378444	NM_001123385.1	1477	Gaa/Taa																																																																															
MED12	9968	MSKCC	GRCh37	X	70344180	70344180	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	136	211	0	ENST00000374080.3:c.1916A>C	p.Asp639Ala	p.D639A	ENST00000374080		639	gAt/gCt																																																																															
ATRX	546	MSKCC	GRCh37	X	76939686	76939686	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	138	256	0	ENST00000373344.5:c.1062G>T	p.Lys354Asn	p.K354N	ENST00000373344	NM_000489.3	354	aaG/aaT																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968167	68968167	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	65	357	0	ENST00000288368.4:c.1196G>T	p.Arg399Leu	p.R399L	ENST00000288368	NM_024870.2	399	cGa/cTa																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813307	102813307	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764732420		P-0066987-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	106	533	0	ENST00000307046.8:c.382G>A	p.Asp128Asn	p.D128N	ENST00000307046	NM_001111285.1	128	Gac/Aac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499362	89499363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0066987-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	138	618	0	ENST00000336596.2:c.2538dup	p.Met847HisfsTer26	p.M847Hfs*26	ENST00000336596	NM_005233.5	844	-/C																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905944	50905944	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755457889		P-0066987-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	214	645	0	ENST00000440232.2:c.916C>T	p.Arg306Cys	p.R306C	ENST00000440232	NM_002691.3	306	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112173561	112173561	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066987-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	298	618	0	ENST00000257430.4:c.2274del	p.Ala759ProfsTer2	p.A759Pfs*2	ENST00000257430	NM_000038.5	757	cAa/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0066989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	157	465	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0066989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	103	273	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745587	162745587	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751660319		P-0066989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	157	519	1	ENST00000367921.3:c.2002C>T	p.Arg668Cys	p.R668C	ENST00000367921	NM_006182.2	668	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112128207	112128207	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	56	406	0	ENST00000257430.4:c.712del	p.Gln238LysfsTer55	p.Q238Kfs*55	ENST00000257430	NM_000038.5	237	tCc/tc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910798	114910798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs951950988		P-0066989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	200	543	0	ENST00000543371.1:c.917C>T	p.Thr306Met	p.T306M	ENST00000543371	NM_001198531.1	306	aCg/aTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639093	3639093	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775915651		P-0066989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	142	494	0	ENST00000294008.3:c.4546G>A	p.Gly1516Arg	p.G1516R	ENST00000294008	NM_032444.2	1516	Ggg/Agg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52712574	52712574	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	161	395	0	ENST00000394830.3:c.178T>G	p.Tyr60Asp	p.Y60D	ENST00000394830	NM_018313.4	60	Tat/Gat																																																																															
NUP93	9688	MSKCC	GRCh37	16	56872928	56872928	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	112	464	0	ENST00000308159.5:c.2083T>A	p.Leu695Met	p.L695M	ENST00000308159	NM_014669.4	695	Ttg/Atg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978467	2978467	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0066989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	107	309	0	ENST00000396946.4:c.865-2A>T		p.X289_splice	ENST00000396946	NM_032415.4	289																																																																																
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0066992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	17	466	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0066992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	71	663	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
APC	324	MSKCC	GRCh37	5	112175720	112175720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	39	651	0	ENST00000257430.4:c.4429C>T	p.Gln1477Ter	p.Q1477*	ENST00000257430	NM_000038.5	1477	Cag/Tag																																																																															
BRAF	673	MSKCC	GRCh37	7	140434494	140434494	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1436193121		P-0066992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	32	497	0	ENST00000288602.6:c.2204G>A	p.Arg735Gln	p.R735Q	ENST00000288602	NM_004333.4	735	cGg/cAg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375142	31375142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs537913125		P-0066992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	39	714	0	ENST00000328111.2:c.539C>T	p.Thr180Met	p.T180M	ENST00000328111	NM_006892.3	180	aCg/aTg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395746	45395746	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	40	520	0	ENST00000262160.6:c.388C>T	p.Arg130Ter	p.R130*	ENST00000262160	NM_005901.5	130	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577111	7577120	+	frameshift_variant	Frame_Shift_Del	DEL	GCACAAACAC	GCACAAACAC	-			P-0066992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	27	610	0	ENST00000269305.4:c.818_827del	p.Arg273ProfsTer69	p.R273Pfs*69	ENST00000269305	NM_001126112.2	273	cGTGTTTGTGCc/cc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479772	67479772	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	33	539	0	ENST00000327367.4:c.1079T>C	p.Phe360Ser	p.F360S	ENST00000327367	NM_005902.3	360	tTt/tCt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599929	10599929	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	60	337	0	ENST00000171111.5:c.1647del	p.Met550Ter	p.M550*	ENST00000171111	NM_203500.1	549	ccC/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0067218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	46	238	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604676	48604676	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	48	343	0	ENST00000342988.3:c.1498del	p.Ile500TyrfsTer4	p.I500Yfs*4	ENST00000342988	NM_005359.5	500	Ata/ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7579357	7579364	+	frameshift_variant	Frame_Shift_Del	DEL	ACGGAAAC	ACGGAAAC	-			P-0067218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	60	327	0	ENST00000269305.4:c.323_330del	p.Gly108AlafsTer38	p.G108Afs*38	ENST00000269305	NM_001126112.2	108	gGTTTCCGT/g																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373280	118373282	+	inframe_deletion	In_Frame_Del	DEL	AAT	AAT	-			P-0067218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	49	356	0	ENST00000534358.1:c.6676_6678del	p.Asn2226del	p.N2226del	ENST00000534358	NM_005933.3	2225	AAT/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0067292-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	124	323	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0067292-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	110	258	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89807250	89807252	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs397507553		P-0067292-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	104	292	0	ENST00000389301.3:c.3788_3790del	p.Phe1263del	p.F1263del	ENST00000389301	NM_000135.2	1263	tTCTcc/tcc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178036	56178036	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067292-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	19	330	0	ENST00000399503.3:c.3009G>C	p.Lys1003Asn	p.K1003N	ENST00000399503	NM_005921.1	1003	aaG/aaC																																																																															
RET	5979	MSKCC	GRCh37	10	43601965	43601965	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1161270866		P-0067292-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	118	369	0	ENST00000355710.3:c.1009G>A	p.Glu337Lys	p.E337K	ENST00000355710	NM_020975.4	337	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0016869-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			450	68	373	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0016869-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			308	33	263	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0016869-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			504	19	0	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
AR	367	MSKCC	GRCh37	X	66931342	66931342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016869-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			342	26	226	0	ENST00000374690.3:c.1984G>T	p.Val662Leu	p.V662L	ENST00000374690	NM_000044.3	662	Gtg/Ttg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485794	8485794	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016869-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			347	50	360	0	ENST00000356435.5:c.3023G>T	p.Ser1008Ile	p.S1008I	ENST00000356435		1008	aGt/aTt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562994	21562994	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749559845		P-0016869-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			617	80	481	2	ENST00000382592.4:c.925G>A	p.Ala309Thr	p.A309T	ENST00000382592	NM_014572.2	309	Gcc/Acc																																																																															
KLF5	688	MSKCC	GRCh37	13	73636669	73636669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016869-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			818	75	512	0	ENST00000377687.4:c.932G>A	p.Ser311Asn	p.S311N	ENST00000377687	NM_001730.3	311	aGt/aAt																																																																															
CASP8	841	MSKCC	GRCh37	2	202123053	202123053	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016869-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			731	19	0	0	ENST00000358485.4:c.99A>C	p.Leu33Phe	p.L33F	ENST00000358485	NM_001080125.1	33	ttA/ttC																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0034524-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			373	121	281	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040911	47040911	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034524-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			86	86	187	0	ENST00000329236.7:c.1207G>T	p.Glu403Ter	p.E403*	ENST00000329236	NM_001204466.1	403	Gag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32915315	32915315	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034524-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	107	344	0	ENST00000380152.3:c.6823G>T	p.Glu2275Ter	p.E2275*	ENST00000380152		2275	Gag/Tag																																																																															
TOP1	7150	MSKCC	GRCh37	20	39741436	39741436	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034524-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	108	336	0	ENST00000361337.2:c.1323G>A	p.Trp441Ter	p.W441*	ENST00000361337	NM_003286.2	441	tgG/tgA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425805	49425805	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034524-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			281	78	422	0	ENST00000301067.7:c.12683A>T	p.Gln4228Leu	p.Q4228L	ENST00000301067	NM_003482.3	4228	cAg/cTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70344695	70344695	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0034524-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			101	61	157	0	ENST00000374080.3:c.2055+1G>T		p.X685_splice	ENST00000374080		685																																																																																
CDC73	79577	MSKCC	GRCh37	1	193205420	193205420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034524-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			435	124	343	0	ENST00000367435.3:c.1351G>T	p.Ala451Ser	p.A451S	ENST00000367435	NM_024529.4	451	Gca/Tca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436148	56436148	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034524-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			258	92	368	0	ENST00000407977.2:c.989G>T	p.Arg330Leu	p.R330L	ENST00000407977		330	cGa/cTa																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246518397	246518397	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0034524-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	110	296	0	ENST00000388985.4:c.165-1G>T		p.X55_splice	ENST00000388985		55																																																																																
PAK1	5058	MSKCC	GRCh37	11	77069987	77069987	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034524-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			366	117	396	0	ENST00000356341.3:c.553A>T	p.Thr185Ser	p.T185S	ENST00000356341	NM_002576.4	185	Acc/Tcc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	29	274	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			473	51	366	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			502	45	363	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			422	41	416	0	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			488	37	393	0	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			506	46	513	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			541	36	368	0	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			426	20	326	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			365	27	406	4	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762108866		P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			417	24	450	4	ENST00000268489.5:c.10215dup	p.Gly3406ArgfsTer25	p.G3406Rfs*25	ENST00000268489	NM_006885.3	3405	-/C																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882050	36882050	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	32	365	2	ENST00000358127.4:c.963del	p.Ala322LeufsTer11	p.A322Lfs*11	ENST00000358127	NM_001280556.1	321	ccC/cc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78422373	78422373	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766248444		P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	41	340	0	ENST00000370768.2:c.1589C>T	p.Thr530Met	p.T530M	ENST00000370768	NM_003902.3	530	aCg/aTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492937	56492937	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	29	345	0	ENST00000407977.2:c.2T>C	p.Met1?	p.M1?	ENST00000407977		1	aTg/aCg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99442808	99442809	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			399	24	348	0	ENST00000268035.6:c.1211dup	p.Asn404LysfsTer66	p.N404Kfs*66	ENST00000268035	NM_000875.3	402	cta/ctAa																																																																															
ATR	545	MSKCC	GRCh37	3	142217557	142217557	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	34	259	0	ENST00000350721.4:c.5440del	p.Arg1814GlufsTer10	p.R1814Efs*10	ENST00000350721	NM_001184.3	1814	Aga/ga																																																																															
BCL2	596	MSKCC	GRCh37	18	60985583	60985583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			385	38	458	0	ENST00000333681.4:c.317G>A	p.Arg106His	p.R106H	ENST00000333681		106	cGc/cAc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942826	44942826	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			377	51	327	0	ENST00000377967.4:c.3406A>G	p.Met1136Val	p.M1136V	ENST00000377967	NM_021140.2	1136	Atg/Gtg																																																																															
MGA	23269	MSKCC	GRCh37	15	42005667	42005667	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			448	46	427	0	ENST00000219905.7:c.3407del	p.Lys1136ArgfsTer6	p.K1136Rfs*6	ENST00000219905	NM_001164273.1	1135	Aaa/aa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			453	84	280	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
BCL6	604	MSKCC	GRCh37	3	187440292	187440292	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750212558		P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			376	44	314	0	ENST00000232014.4:c.2075G>A	p.Arg692His	p.R692H	ENST00000232014	NM_001130845.1	692	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223274	36223274	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			480	31	578	1	ENST00000222270.7:c.5828del	p.Pro1943LeufsTer44	p.P1943Lfs*44	ENST00000222270	NM_014727.1	1942	Ccc/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213358	36213359	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	32	423	0	ENST00000222270.7:c.2561_2562del	p.Glu854AlafsTer34	p.E854Afs*34	ENST00000222270	NM_014727.1	852	aAG/a																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557846	187557848	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs764081811		P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			502	41	367	0	ENST00000441802.2:c.3863_3865del	p.Ser1288del	p.S1288del	ENST00000441802	NM_005245.3	1288	tCCTac/tac																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048772	180048772	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758587669		P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			484	37	470	0	ENST00000261937.6:c.1790C>T	p.Thr597Met	p.T597M	ENST00000261937	NM_182925.4	597	aCg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426771	49426772	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs944680171		P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			568	31	480	0	ENST00000301067.7:c.11714_11716dup	p.Gln3905dup	p.Q3905dup	ENST00000301067	NM_003482.3	3905	ctg/cAGCtg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532568	63532568	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			495	41	520	0	ENST00000307078.5:c.2011del	p.Arg671AlafsTer18	p.R671Afs*18	ENST00000307078	NM_004655.3	671	Cgc/gc																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127920582	127920582	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140793926		P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			402	54	273	0	ENST00000373547.4:c.317G>A	p.Arg106His	p.R106H	ENST00000373547	NM_002721.4	106	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089471	27089471	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			411	33	369	0	ENST00000324856.7:c.2430del	p.Arg811GlyfsTer22	p.R811Gfs*22	ENST00000324856	NM_006015.4	809	taC/ta																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928639	49928639	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1008363508		P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			429	30	393	0	ENST00000296474.3:c.3635G>A	p.Arg1212Gln	p.R1212Q	ENST00000296474	NM_002447.2	1212	cGg/cAg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190670397	190670397	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs576285843		P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			407	58	289	0	ENST00000441310.2:c.335C>T	p.Thr112Met	p.T112M	ENST00000441310	NM_000534.4	112	aCg/aTg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749376	41749376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			260	43	274	0	ENST00000226382.2:c.419C>T	p.Ala140Val	p.A140V	ENST00000226382	NM_003924.3	140	gCg/gTg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			346	46	236	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424520	47424520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			485	49	436	0	ENST00000404338.3:c.2588G>A	p.Arg863His	p.R863H	ENST00000404338	NM_004491.4	863	cGt/cAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30648391	30648391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	28	351	0	ENST00000359013.4:c.16C>T	p.Leu6Phe	p.L6F	ENST00000359013	NM_001024847.2	6	Ctc/Ttc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347200	347201	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			346	21	341	0	ENST00000262320.3:c.1810dup	p.Arg604LysfsTer7	p.R604Kfs*7	ENST00000262320	NM_003502.3	604	aga/aAga																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553555	106553555	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			453	38	433	0	ENST00000369096.4:c.1520A>G	p.Asp507Gly	p.D507G	ENST00000369096	NM_001198.3	507	gAc/gGc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193119513	193119513	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			396	56	269	0	ENST00000367435.3:c.907+1G>A		p.X303_splice	ENST00000367435	NM_024529.4	303																																																																																
DCUN1D1	54165	MSKCC	GRCh37	3	182683410	182683411	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			430	41	242	0	ENST00000292782.4:c.134dup	p.Gln46ProfsTer4	p.Q46Pfs*4	ENST00000292782	NM_020640.2	45	ttc/ttTc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244386	46244386	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			499	43	417	0	ENST00000334344.6:c.2480A>G	p.Gln827Arg	p.Q827R	ENST00000334344	NM_152641.2	827	cAa/cGa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50820775	50820776	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	32	292	0	ENST00000398568.2:c.1956_1957del	p.Ala653HisfsTer11	p.A653Hfs*11	ENST00000398568	NM_001042412.1	650	taTGtg/tatg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831090	72831090	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	50	393	0	ENST00000268489.5:c.5491C>A	p.Leu1831Met	p.L1831M	ENST00000268489	NM_006885.3	1831	Ctg/Atg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61721129	61721129	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			450	41	331	0	ENST00000401558.2:c.1145G>T	p.Arg382Ile	p.R382I	ENST00000401558	NM_003400.3	382	aGa/aTa																																																																															
CDC42	998	MSKCC	GRCh37	1	22408230	22408230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			422	33	334	0	ENST00000344548.3:c.121G>A	p.Ala41Thr	p.A41T	ENST00000344548	NM_001039802.1	41	Gca/Aca																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523136	176523136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			538	37	487	0	ENST00000292408.4:c.1900G>A	p.Ala634Thr	p.A634T	ENST00000292408	NM_213647.1	634	Gcc/Acc																																																																															
KLF5	688	MSKCC	GRCh37	13	73649861	73649861	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs374994842		P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	29	324	0	ENST00000377687.4:c.1211A>G	p.Lys404Arg	p.K404R	ENST00000377687	NM_001730.3	404	aAg/aGg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057074	180057074	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			370	26	458	0	ENST00000261937.6:c.545A>G	p.Glu182Gly	p.E182G	ENST00000261937	NM_182925.4	182	gAg/gGg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462982	120462982	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			398	38	363	0	ENST00000256646.2:c.5349del	p.Ile1784LeufsTer36	p.I1784Lfs*36	ENST00000256646	NM_024408.3	1783	ccC/cc																																																																															
TET2	54790	MSKCC	GRCh37	4	106197152	106197152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			415	35	405	0	ENST00000380013.4:c.5485C>T	p.Pro1829Ser	p.P1829S	ENST00000380013	NM_001127208.2	1829	Cca/Tca																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347268	89347268	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			429	33	455	0	ENST00000301030.4:c.5682del	p.Arg1895GlufsTer68	p.R1895Efs*68	ENST00000301030	NM_001256183.1	1894	ccC/cc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52728987	52728987	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			429	37	365	0	ENST00000322088.6:c.1679T>C	p.Val560Ala	p.V560A	ENST00000322088	NM_014225.5	560	gTc/gCc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12650269	12650269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			454	38	343	0	ENST00000251849.4:c.577C>T	p.Leu193Phe	p.L193F	ENST00000251849	NM_002880.3	193	Ctc/Ttc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156841536	156841536	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			540	49	504	0	ENST00000524377.1:c.839T>C	p.Val280Ala	p.V280A	ENST00000524377	NM_002529.3	280	gTc/gCc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430377	181430377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			357	24	331	0	ENST00000325404.1:c.229G>A	p.Ala77Thr	p.A77T	ENST00000325404	NM_003106.3	77	Gcc/Acc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212293175	212293175	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1312174046		P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			407	54	266	0	ENST00000342788.4:c.2677C>T	p.His893Tyr	p.H893Y	ENST00000342788	NM_005235.2	893	Cat/Tat																																																																															
NF1	4763	MSKCC	GRCh37	17	29557286	29557286	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753082620		P-0036151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	32	289	0	ENST00000358273.4:c.2999G>A	p.Arg1000His	p.R1000H	ENST00000358273	NM_001042492.2	1000	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042285-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			358	25	323	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
CTR9	9646	MSKCC	GRCh37	11	10785358	10785358	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs869312709		P-0042285-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			278	78	286	0	ENST00000361367.2:c.1126G>A	p.Glu376Lys	p.E376K	ENST00000361367	NM_014633.3	376	Gaa/Aaa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239759	53239759	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0042285-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			297	85	383	0	ENST00000375401.3:c.1584-1G>A		p.X528_splice	ENST00000375401	NM_004187.3	528																																																																																
SMARCA2	6595	MSKCC	GRCh37	9	2161768	2161768	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042285-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			308	64	276	0	ENST00000349721.2:c.4064A>G	p.Asp1355Gly	p.D1355G	ENST00000349721	NM_003070.3	1355	gAt/gGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101423	27101423	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			209	280	240	0	ENST00000324856.7:c.4706del	p.Pro1569HisfsTer43	p.P1569Hfs*43	ENST00000324856	NM_006015.4	1569	Cca/ca																																																																															
MGA	23269	MSKCC	GRCh37	15	42041753	42041753	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	291	391	0	ENST00000219905.7:c.5948C>G	p.Ser1983Ter	p.S1983*	ENST00000219905	NM_001164273.1	1983	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579317	7579317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			245	584	367	0	ENST00000269305.4:c.370T>C	p.Cys124Arg	p.C124R	ENST00000269305	NM_001126112.2	124	Tgc/Cgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302276	15302276	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs774985086		P-0046110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			246	283	409	0	ENST00000263388.2:c.995G>T	p.Arg332Leu	p.R332L	ENST00000263388	NM_000435.2	332	cGc/cTc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467828	50467828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1040607869		P-0046110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			222	364	424	1	ENST00000331340.3:c.1063G>A	p.Ala355Thr	p.A355T	ENST00000331340	NM_006060.4	355	Gcg/Acg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022490	12022510	+	inframe_deletion	In_Frame_Del	DEL	GGCCCCTCCGGTCCCCCCTGG	GGCCCCTCCGGTCCCCCCTGG	-			P-0046110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			521	119	522	0	ENST00000396373.4:c.596_616del	p.Arg199_Asp206delinsHis	p.R199_D206delinsH	ENST00000396373	NM_001987.4	199	cGGCCCCTCCGGTCCCCCCTGGac/cac																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644558	21644558	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			206	235	336	1	ENST00000421138.2:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000421138		37	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425325	49425332	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTGGGT	TTCTGGGT	-			P-0046110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			621	231	435	0	ENST00000301067.7:c.13156_13163del	p.Thr4386AlafsTer21	p.T4386Afs*21	ENST00000301067	NM_003482.3	4386	ACCCAGAAg/g																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434547	110434547	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			520	210	455	0	ENST00000375856.3:c.3854del	p.Gly1285AlafsTer46	p.G1285Afs*46	ENST00000375856	NM_003749.2	1285	gGc/gc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610159	10610159	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			260	321	461	0	ENST00000171111.5:c.551C>G	p.Ala184Gly	p.A184G	ENST00000171111	NM_203500.1	184	gCc/gGc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664931	138664931	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750300712		P-0046110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			557	142	305	0	ENST00000330315.3:c.634C>T	p.Pro212Ser	p.P212S	ENST00000330315	NM_023067.3	212	Ccc/Tcc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803481	32803482	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0046110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			723	75	426	0	ENST00000374899.4:c.677_678delinsTA	p.Arg226Leu	p.R226L	ENST00000374899	NM_018833.2	226	cGG/cTA																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8517911	8517911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047741-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			514	52	325	0	ENST00000356435.5:c.1480G>T	p.Ala494Ser	p.A494S	ENST00000356435		494	Gct/Tct																																																																															
STK11	6794	MSKCC	GRCh37	19	1220502	1220502	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T	rs121913317		P-0047741-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			292	50	474	0	ENST00000326873.7:c.595G>T	p.Glu199Ter	p.E199*	ENST00000326873	NM_000455.4	199	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047741-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			544	162	291	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ALK	238	MSKCC	GRCh37	2	29498313	29498313	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047741-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			372	46	380	0	ENST00000389048.3:c.1867G>C	p.Val623Leu	p.V623L	ENST00000389048	NM_004304.4	623	Gtg/Ctg																																																																															
KDR	3791	MSKCC	GRCh37	4	55987293	55987293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047741-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			418	29	252	0	ENST00000263923.4:c.132G>T	p.Lys44Asn	p.K44N	ENST00000263923	NM_002253.2	44	aaG/aaT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519930		P-0048461-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			350	8	406	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs876660821		P-0048461-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			210	128	541	0	ENST00000269305.4:c.537T>A	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caA																																																																															
ATRX	546	MSKCC	GRCh37	X	76937873	76937873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048461-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	45	254	0	ENST00000373344.5:c.2875G>A	p.Asp959Asn	p.D959N	ENST00000373344	NM_000489.3	959	Gat/Aat																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18715683	18715683	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048461-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			434	41	458	0	ENST00000266497.5:c.3514T>A	p.Leu1172Met	p.L1172M	ENST00000266497		1172	Ttg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0053215-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			244	199	368	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436722	110436722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053215-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			311	75	528	0	ENST00000375856.3:c.1679C>T	p.Ser560Leu	p.S560L	ENST00000375856	NM_003749.2	560	tCg/tTg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793335	139793335	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1203788679		P-0053215-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			435	131	447	0	ENST00000247668.2:c.143A>G	p.Gln48Arg	p.Q48R	ENST00000247668	NM_021138.3	48	cAg/cGg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63845609	63845609	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0053215-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			384	184	375	0	ENST00000279873.7:c.1348A>T	p.Lys450Ter	p.K450*	ENST00000279873	NM_032199.2	450	Aaa/Taa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827938	72827938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053215-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			509	108	507	0	ENST00000268489.5:c.8643G>A	p.Met2881Ile	p.M2881I	ENST00000268489	NM_006885.3	2881	atG/atA																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63845614	63845614	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053215-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	185	381	0	ENST00000279873.7:c.1353C>G	p.Ser451Arg	p.S451R	ENST00000279873	NM_032199.2	451	agC/agG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0054846-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			324	77	311	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25536796	25536796	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781254365		P-0054846-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			636	77	345	0	ENST00000264709.3:c.58G>A	p.Glu20Lys	p.E20K	ENST00000264709	NM_175629.2	20	Gag/Aag																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185181425	185181425	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1435276633		P-0054846-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	162	223	0	ENST00000265026.3:c.1366C>T	p.Arg456Ter	p.R456*	ENST00000265026	NM_004721.4	456	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880886	134880886	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054846-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			588	154	240	0	ENST00000398015.3:c.1449G>T	p.Met483Ile	p.M483I	ENST00000398015	NM_004441.4	483	atG/atT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69032457	69032457	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054846-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			255	187	292	0	ENST00000288368.4:c.3531A>C	p.Lys1177Asn	p.K1177N	ENST00000288368	NM_024870.2	1177	aaA/aaC																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538346	9538346	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0054846-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	187	336	0	ENST00000353224.5:c.1652C>G	p.Ser551Ter	p.S551*	ENST00000353224	NM_177990.2	551	tCa/tGa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691928	30691928	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054846-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			386	177	343	1	ENST00000359013.4:c.505A>T	p.Asn169Tyr	p.N169Y	ENST00000359013	NM_001024847.2	169	Aat/Tat																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144120	11144120	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054846-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			385	209	379	0	ENST00000344626.4:c.3701T>G	p.Phe1234Cys	p.F1234C	ENST00000344626	NM_003072.3	1234	tTc/tGc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082733	16082733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054846-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			198	70	155	0	ENST00000281043.3:c.547G>T	p.Ala183Ser	p.A183S	ENST00000281043	NM_005378.4	183	Gcc/Tcc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499505	89499505	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054846-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			523	202	336	0	ENST00000336596.2:c.2675C>G	p.Thr892Ser	p.T892S	ENST00000336596	NM_005233.5	892	aCc/aGc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86659239	86659239	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054846-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			202	102	292	0	ENST00000274376.6:c.1528G>T	p.Glu510Ter	p.E510*	ENST00000274376	NM_002890.2	510	Gaa/Taa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212576896	212576896	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054846-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			230	92	256	0	ENST00000342788.4:c.1003G>C	p.Asp335His	p.D335H	ENST00000342788	NM_005235.2	335	Gat/Cat																																																																															
ATRX	546	MSKCC	GRCh37	X	76829721	76829721	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054846-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			201	13	145	0	ENST00000373344.5:c.6320A>G	p.Asn2107Ser	p.N2107S	ENST00000373344	NM_000489.3	2107	aAt/aGt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89849416	89849416	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0054846-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			555	254	374	0	ENST00000389301.3:c.1565A>T	p.Lys522Met	p.K522M	ENST00000389301	NM_000135.2	522	aAg/aTg																																																																															
ATR	545	MSKCC	GRCh37	3	142177907	142177907	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054846-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			376	104	299	0	ENST00000350721.4:c.7396A>G	p.Met2466Val	p.M2466V	ENST00000350721	NM_001184.3	2466	Atg/Gtg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0058127-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			189	144	488	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0058127-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			334	328	522	2	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0058127-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			212	72	383	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28913322	28913322	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765475765		P-0058127-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			880	121	406	0	ENST00000282397.4:c.2471G>A	p.Arg824Gln	p.R824Q	ENST00000282397	NM_002019.4	824	cGg/cAg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058127-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			263	199	471	3	ENST00000261937.6:c.89del	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																															
ATM	472	MSKCC	GRCh37	11	108200940	108200940	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0058127-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			242	75	293	0	ENST00000278616.4:c.7308-1G>A		p.X2436_splice	ENST00000278616	NM_000051.3	2436																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66467877	66467877	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0058127-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	32	333	0	ENST00000273854.3:c.392A>C	p.Lys131Thr	p.K131T	ENST00000273854	NM_004439.5	131	aAa/aCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0058127-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			144	76	240	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998079	169998080	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCGGGTAATAGGAAGAGGAAGTTATGCCAAAGTA			P-0058127-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			354	22	343	0	ENST00000295797.4:c.772_805dup	p.Leu269ProfsTer34	p.L269Pfs*34	ENST00000295797	NM_002740.5	257	ctc/ctCCGGGTAATAGGAAGAGGAAGTTATGCCAAAGTAc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998890	11998890	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0058127-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			104	76	271	0	ENST00000353533.5:c.394-2A>C		p.X132_splice	ENST00000353533	NM_003010.3	132																																																																																
RAD51B	5890	MSKCC	GRCh37	14	69061220	69061220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058127-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			160	155	202	0	ENST00000487270.1:c.1055T>C	p.Val352Ala	p.V352A	ENST00000487270	NM_133509.3	352	gTc/gCc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081544	143081544	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058127-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			442	189	378	0	ENST00000262992.4:c.1530A>G	p.Ile510Met	p.I510M	ENST00000262992	NM_001101669.1	510	atA/atG																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437914	110437914	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058127-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			106	123	235	0	ENST00000375856.3:c.487T>G	p.Cys163Gly	p.C163G	ENST00000375856	NM_003749.2	163	Tgc/Ggc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123693	11123693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058127-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			498	53	425	0	ENST00000344626.4:c.2343G>A	p.Met781Ile	p.M781I	ENST00000344626	NM_003072.3	781	atG/atA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151841839	151841839	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058127-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			678	37	392	0	ENST00000262189.6:c.14302G>C	p.Glu4768Gln	p.E4768Q	ENST00000262189	NM_170606.2	4768	Gaa/Caa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0058231-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			192	309	230	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0058231-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			69	551	483	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0058231-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			80	719	486	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag																																																																															
CUL3	8452	MSKCC	GRCh37	2	225379354	225379354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058231-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			181	243	352	0	ENST00000264414.4:c.514G>A	p.Glu172Lys	p.E172K	ENST00000264414	NM_003590.4	172	Gag/Aag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602872	10602872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058231-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			455	722	469	0	ENST00000171111.5:c.706G>A	p.Asp236Asn	p.D236N	ENST00000171111	NM_203500.1	236	Gac/Aac																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274768	123274768	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058231-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			71	439	443	0	ENST00000358487.5:c.1150G>C	p.Gly384Arg	p.G384R	ENST00000358487	NM_000141.4	384	Ggg/Cgg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509116	66509116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058231-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			294	41	342	0	ENST00000273854.3:c.211G>T	p.Gly71Trp	p.G71W	ENST00000273854	NM_004439.5	71	Ggg/Tgg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858618	57858618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058231-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			722	83	423	0	ENST00000228682.2:c.356G>T	p.Gly119Val	p.G119V	ENST00000228682	NM_005269.2	119	gGc/gTc																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598882	28598882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058231-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			62	525	525	0	ENST00000253063.3:c.442G>T	p.Gly148Cys	p.G148C	ENST00000253063	NM_031459.4	148	Ggc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517927	187517927	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058231-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	269	562	0	ENST00000441802.2:c.12767A>T	p.Tyr4256Phe	p.Y4256F	ENST00000441802	NM_005245.3	4256	tAc/tTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425374	49425374	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0058231-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			321	570	501	0	ENST00000301067.7:c.13114A>T	p.Lys4372Ter	p.K4372*	ENST00000301067	NM_003482.3	4372	Aag/Tag																																																																															
BTK	695	MSKCC	GRCh37	X	100630142	100630142	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058231-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			222	39	166	0	ENST00000308731.7:c.131T>G	p.Phe44Cys	p.F44C	ENST00000308731	NM_000061.2	44	tTt/tGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426042	49426042	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058231-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			833	85	564	0	ENST00000301067.7:c.12446C>A	p.Thr4149Asn	p.T4149N	ENST00000301067	NM_003482.3	4149	aCc/aAc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175957456	175957456	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058231-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			396	250	384	0	ENST00000367669.3:c.1940G>T	p.Gly647Val	p.G647V	ENST00000367669	NM_022457.5	647	gGc/gTc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632567	3632567	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058231-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			261	511	472	0	ENST00000294008.3:c.5281C>G	p.Arg1761Gly	p.R1761G	ENST00000294008	NM_032444.2	1761	Cgc/Ggc																																																																															
TET2	54790	MSKCC	GRCh37	4	106197443	106197443	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058231-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			227	252	384	0	ENST00000380013.4:c.5776C>A	p.Arg1926Ser	p.R1926S	ENST00000380013	NM_001127208.2	1926	Cgt/Agt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662467	117662467	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058231-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			315	153	429	0	ENST00000368508.3:c.4910C>A	p.Ala1637Asp	p.A1637D	ENST00000368508	NM_002944.2	1637	gCc/gAc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162622243	162622243	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058231-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			228	356	414	0	ENST00000366898.1:c.454G>T	p.Gly152Cys	p.G152C	ENST00000366898	NM_004562.2	152	Ggc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0060340-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			365	648	429	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TERT	7015	MSKCC	GRCh37	5	1294328	1294328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060340-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			498	29	455	0	ENST00000310581.5:c.673G>A	p.Gly225Arg	p.G225R	ENST00000310581	NM_198253.2	225	Ggg/Agg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249091	55249091	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519861		P-0060340-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			881	253	465	0	ENST00000275493.2:c.2389T>A	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	Tgc/Agc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692931	89692931	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060340-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			285	159	347	0	ENST00000371953.3:c.415T>G	p.Leu139Val	p.L139V	ENST00000371953	NM_000314.4	139	Tta/Gta																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604725	48604726	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0060340-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			157	348	479	0	ENST00000342988.3:c.1549_1550del	p.Ser517HisfsTer9	p.S517Hfs*9	ENST00000342988	NM_005359.5	516	cAG/c																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87563420	87563420	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183344464		P-0060340-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	313	520	0	ENST00000277120.3:c.1808G>A	p.Arg603His	p.R603H	ENST00000277120		603	cGt/cAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862757	9862757	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0060340-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			736	128	438	0	ENST00000330684.3:c.2546T>G	p.Phe849Cys	p.F849C	ENST00000330684	NM_001134407.1	849	tTc/tGc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45371826	45371826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060340-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			294	158	330	0	ENST00000262160.6:c.1165G>A	p.Glu389Lys	p.E389K	ENST00000262160	NM_005901.5	389	Gaa/Aaa																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551832	150551832	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060340-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			478	133	440	0	ENST00000369026.2:c.175G>C	p.Gly59Arg	p.G59R	ENST00000369026	NM_021960.4	59	Gga/Cga																																																																															
TERT	7015	MSKCC	GRCh37	5	1296485	1296486	+	upstream_gene_variant	5'Flank	DNP	CA	CA	TG			P-0060340-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			66	11	75	0				ENST00000310581	NM_198253.2																																																																																	
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	87	378	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
RHOA	387	MSKCC	GRCh37	3	49413010	49413010	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519952		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	80	482	0	ENST00000418115.1:c.13C>T	p.Arg5Trp	p.R5W	ENST00000418115	NM_001664.2	5	Cgg/Tgg																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	13	234	0	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210451	2210451	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138206172		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	66	593	0	ENST00000398665.3:c.1058C>T	p.Ala353Val	p.A353V	ENST00000398665	NM_032482.2	353	gCg/gTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527809	157527809	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374035954		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	99	633	0	ENST00000346085.5:c.5534G>A	p.Arg1845His	p.R1845H	ENST00000346085	NM_020732.3	1845	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	80	657	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	71	547	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
SPOP	8405	MSKCC	GRCh37	17	47677757	47677757	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772401624		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	96	510	0	ENST00000347630.2:c.1108C>T	p.Arg370Cys	p.R370C	ENST00000347630	NM_001007230.1	370	Cgc/Tgc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845901	156845901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769486223		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	101	836	0	ENST00000524377.1:c.1531G>A	p.Val511Met	p.V511M	ENST00000524377	NM_002529.3	511	Gtg/Atg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969417	44969417	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370298215		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	65	468	0	ENST00000377967.4:c.4099G>A	p.Gly1367Arg	p.G1367R	ENST00000377967	NM_021140.2	1367	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780068		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	119	623	0	ENST00000269305.4:c.472C>T	p.Arg158Cys	p.R158C	ENST00000269305	NM_001126112.2	158	Cgc/Tgc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432032	121432032	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs886039544		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	92	650	0	ENST00000257555.6:c.779C>T	p.Thr260Met	p.T260M	ENST00000257555		260	aCg/aTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952142	178952142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1253171657		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	20	340	0	ENST00000263967.3:c.3197C>T	p.Ala1066Val	p.A1066V	ENST00000263967	NM_006218.2	1066	gCa/gTa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65312368	65312368	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149968614		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	75	549	0	ENST00000342505.4:c.1951G>A	p.Val651Met	p.V651M	ENST00000342505	NM_002227.2	651	Gtg/Atg																																																																															
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	133	485	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																															
IL10	3586	MSKCC	GRCh37	1	206941989	206941989	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs142726516		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	38	320	0	ENST00000423557.1:c.529C>T	p.Arg177Ter	p.R177*	ENST00000423557	NM_000572.2	177	Cga/Tga																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439281	52439281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143891879		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	89	591	0	ENST00000460680.1:c.961G>A	p.Ala321Thr	p.A321T	ENST00000460680	NM_004656.3	321	Gca/Aca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831357	72831358	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTG	rs552138038		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	65	651	2	ENST00000268489.5:c.5221_5223dup	p.Gln1741dup	p.Q1741dup	ENST00000268489	NM_006885.3	1741	-/CAA																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028632	12028632	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753665559		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	95	441	0	ENST00000353533.5:c.835G>A	p.Ala279Thr	p.A279T	ENST00000353533	NM_003010.3	279	Gca/Aca																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777635	9777635	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773473376		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	92	647	0	ENST00000377346.4:c.971G>A	p.Arg324His	p.R324H	ENST00000377346	NM_005026.3	324	cGc/cAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925334	114925334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	72	534	0	ENST00000543371.1:c.1412G>A	p.Arg471His	p.R471H	ENST00000543371	NM_001198531.1	471	cGc/cAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412058	63412059	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	91	771	0	ENST00000330258.3:c.1108dup	p.Glu370GlyfsTer8	p.E370Gfs*8	ENST00000330258	NM_152424.3	370	gag/gGag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912149	114912149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	67	472	0	ENST00000543371.1:c.1219C>T	p.Arg407Ter	p.R407*	ENST00000543371	NM_001198531.1	407	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101353	27101353	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	88	562	0	ENST00000324856.7:c.4635G>A	p.Trp1545Ter	p.W1545*	ENST00000324856	NM_006015.4	1545	tgG/tgA																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867333	45867333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765839639		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	79	681	0	ENST00000391945.4:c.860G>A	p.Arg287His	p.R287H	ENST00000391945	NM_000400.3	287	cGt/cAt																																																																															
TP63	8626	MSKCC	GRCh37	3	189456528	189456528	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121908848		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	70	488	0	ENST00000264731.3:c.289C>T	p.Arg97Cys	p.R97C	ENST00000264731	NM_003722.4	97	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175880	112175880	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	88	517	0	ENST00000257430.4:c.4592del	p.Asn1531MetfsTer34	p.N1531Mfs*34	ENST00000257430	NM_000038.5	1530	gAa/ga																																																																															
CIC	23152	MSKCC	GRCh37	19	42797777	42797777	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778206		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	93	689	0	ENST00000575354.2:c.3829C>T	p.Arg1277Cys	p.R1277C	ENST00000575354	NM_015125.3	1277	Cgc/Tgc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576120	88576120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147160868		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	80	556	0	ENST00000360948.2:c.1553G>A	p.Arg518His	p.R518H	ENST00000360948	NM_001012338.2	518	cGt/cAt																																																																															
AURKA	6790	MSKCC	GRCh37	20	54958090	54958090	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370497957		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	71	469	0	ENST00000312783.6:c.517G>A	p.Gly173Arg	p.G173R	ENST00000312783	NM_198436.1	173	Gga/Aga																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98232135	98232135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	61	473	0	ENST00000331920.6:c.1807C>T	p.Arg603Cys	p.R603C	ENST00000331920	NM_000264.3	603	Cgc/Tgc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779076	3779076	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776500881		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	68	700	0	ENST00000262367.5:c.5972C>T	p.Pro1991Leu	p.P1991L	ENST00000262367	NM_004380.2	1991	cCg/cTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65321195	65321195	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	93	554	0	ENST00000342505.4:c.1645C>T	p.Arg549Ter	p.R549*	ENST00000342505	NM_002227.2	549	Cga/Tga																																																																															
RAD21	5885	MSKCC	GRCh37	8	117868912	117868912	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746064262		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	59	337	0	ENST00000297338.2:c.787G>A	p.Asp263Asn	p.D263N	ENST00000297338	NM_006265.2	263	Gat/Aat																																																																															
B2M	567	MSKCC	GRCh37	15	45003812	45003812	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	144	601	0	ENST00000558401.1:c.67+1G>A		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
MAP2K4	6416	MSKCC	GRCh37	17	12028689	12028689	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	97	415	0	ENST00000353533.5:c.891+1G>A		p.X297_splice	ENST00000353533	NM_003010.3	297																																																																																
CIC	23152	MSKCC	GRCh37	19	42794623	42794623	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs564532974		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	76	612	0	ENST00000575354.2:c.1703C>T	p.Ala568Val	p.A568V	ENST00000575354	NM_015125.3	568	gCg/gTg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199856	138199856	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748195339		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	111	655	0	ENST00000237289.4:c.1274C>T	p.Pro425Leu	p.P425L	ENST00000237289	NM_001270507.1	425	cCg/cTg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041629	14041629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777184889		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	71	573	1	ENST00000311895.7:c.2176C>T	p.Arg726Cys	p.R726C	ENST00000311895	NM_005236.2	726	Cgc/Tgc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984672	11984672	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	36	283	0	ENST00000353533.5:c.219-1G>C		p.X73_splice	ENST00000353533	NM_003010.3	73																																																																																
PIK3R3	8503	MSKCC	GRCh37	1	46521581	46521581	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs552393862		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	101	399	0	ENST00000262741.5:c.827G>A	p.Arg276His	p.R276H	ENST00000262741	NM_003629.3	276	cGt/cAt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967269	134967269	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749666684		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	76	637	1	ENST00000398015.3:c.2608C>T	p.Arg870Trp	p.R870W	ENST00000398015	NM_004441.4	870	Cgg/Tgg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102206729	102206729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	82	295	0	ENST00000263464.3:c.1357G>A	p.Ala453Thr	p.A453T	ENST00000263464	NM_001165.4	453	Gca/Aca																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52668729	52668729	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759670972		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	62	422	0	ENST00000394830.3:c.1190G>A	p.Arg397Gln	p.R397Q	ENST00000394830	NM_018313.4	397	cGg/cAg																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631824	90631824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	135	776	2	ENST00000330062.3:c.529G>A	p.Asp177Asn	p.D177N	ENST00000330062	NM_002168.2	177	Gac/Aac																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103519115	103519115	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774078839		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	74	509	0	ENST00000355739.4:c.2453C>T	p.Ala818Val	p.A818V	ENST00000355739	NM_000123.3	818	gCg/gTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29004277	29004277	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370686484		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	68	429	0	ENST00000282397.4:c.1016G>A	p.Arg339Gln	p.R339Q	ENST00000282397	NM_002019.4	339	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578184	7578184	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146340390		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	94	646	0	ENST00000269305.4:c.665C>T	p.Pro222Leu	p.P222L	ENST00000269305	NM_001126112.2	222	cCg/cTg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45858935	45858935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	69	467	0	ENST00000391945.4:c.1531C>T	p.Arg511Trp	p.R511W	ENST00000391945	NM_000400.3	511	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260956	16260956	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs559925121		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	106	726	0	ENST00000375759.3:c.8221G>A	p.Val2741Ile	p.V2741I	ENST00000375759	NM_015001.2	2741	Gtc/Atc																																																																															
CIC	23152	MSKCC	GRCh37	19	42798239	42798239	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1472569077		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	84	718	0	ENST00000575354.2:c.4193C>T	p.Thr1398Met	p.T1398M	ENST00000575354	NM_015125.3	1398	aCg/aTg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169985715	169985715	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs567380681		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	77	379	0	ENST00000295797.4:c.377G>A	p.Arg126His	p.R126H	ENST00000295797	NM_002740.5	126	cGt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	103	624	1	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136031	64136031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	79	619	0	ENST00000334205.4:c.1292G>A	p.Arg431His	p.R431H	ENST00000334205	NM_003942.2	431	cGc/cAc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523142	176523142	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778323767		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	109	854	0	ENST00000292408.4:c.1906G>A	p.Gly636Ser	p.G636S	ENST00000292408	NM_213647.1	636	Ggc/Agc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627217	37627217	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370304179		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	90	490	0	ENST00000447079.4:c.1132C>T	p.Arg378Cys	p.R378C	ENST00000447079	NM_015083.1	378	Cgc/Tgc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602293	10602293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1320679251		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	103	715	0	ENST00000171111.5:c.1285G>A	p.Gly429Ser	p.G429S	ENST00000171111	NM_203500.1	429	Ggc/Agc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2207672	2207672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	59	496	0	ENST00000398665.3:c.956G>A	p.Arg319His	p.R319H	ENST00000398665	NM_032482.2	319	cGc/cAc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661663	227661664	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCC			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	63	660	0	ENST00000305123.5:c.1789_1791dup	p.Gly597dup	p.G597dup	ENST00000305123	NM_005544.2	597	-/GGG																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469945	25469945	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767236033		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	83	541	1	ENST00000264709.3:c.1097G>A	p.Arg366His	p.R366H	ENST00000264709	NM_175629.2	366	cGc/cAc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281758	49281758	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777488065		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	92	629	1	ENST00000282018.3:c.805G>A	p.Val269Ile	p.V269I	ENST00000282018	NM_020377.2	269	Gtc/Atc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779692	3779692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	89	676	1	ENST00000262367.5:c.5356C>T	p.Arg1786Cys	p.R1786C	ENST00000262367	NM_004380.2	1786	Cgc/Tgc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112364	115112364	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1411259653		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	57	671	0	ENST00000257566.3:c.1376G>A	p.Arg459His	p.R459H	ENST00000257566	NM_016569.3	459	cGc/cAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68973016	68973016	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	20	327	0	ENST00000288368.4:c.1339+2T>C		p.X447_splice	ENST00000288368	NM_024870.2	447																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106509433	106509433	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747427177		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	59	589	0	ENST00000359195.3:c.1427G>A	p.Arg476His	p.R476H	ENST00000359195	NM_002649.2	476	cGc/cAc																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39305247	39305247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	62	540	0	ENST00000373001.3:c.1178G>A	p.Gly393Asp	p.G393D	ENST00000373001	NM_022157.3	393	gGc/gAc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46715684	46715684	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369982284		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	81	461	0	ENST00000371975.4:c.103C>T	p.Arg35Trp	p.R35W	ENST00000371975	NM_003579.3	35	Cgg/Tgg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900206	101900206	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs727503470		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	82	465	0	ENST00000374994.4:c.640G>T	p.Gly214Cys	p.G214C	ENST00000374994	NM_004612.2	214	Ggt/Tgt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250025	110250025	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs780759576		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	66	515	0	ENST00000374672.4:c.650A>C	p.Gln217Pro	p.Q217P	ENST00000374672	NM_004235.4	217	cAg/cCg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45856039	45856039	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372960848		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	92	553	1	ENST00000391945.4:c.1867G>A	p.Val623Ile	p.V623I	ENST00000391945	NM_000400.3	623	Gtc/Atc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046610	30046610	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs559828373		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	86	498	0	ENST00000331968.5:c.2573G>A	p.Arg858His	p.R858H	ENST00000331968	NM_002742.2	858	cGc/cAc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4090610	4090610	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730880516		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	77	474	0	ENST00000262948.5:c.1189C>T	p.Arg397Cys	p.R397C	ENST00000262948	NM_030662.3	397	Cgc/Tgc																																																																															
TP63	8626	MSKCC	GRCh37	3	189456529	189456529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752080701		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	94	486	0	ENST00000264731.3:c.290G>A	p.Arg97His	p.R97H	ENST00000264731	NM_003722.4	97	cGc/cAc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138426006	138426006	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755672708		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	34	230	0	ENST00000289153.2:c.1525G>A	p.Asp509Asn	p.D509N	ENST00000289153	NM_006219.2	509	Gat/Aat																																																																															
RAB35	11021	MSKCC	GRCh37	12	120541709	120541709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	94	645	0	ENST00000229340.5:c.148G>A	p.Val50Met	p.V50M	ENST00000229340	NM_006861.6	50	Gtg/Atg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519731	176519731	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1348650129		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	98	635	1	ENST00000292408.4:c.1003G>A	p.Ala335Thr	p.A335T	ENST00000292408	NM_213647.1	335	Gca/Aca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829643	72829643	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763494543		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	57	551	0	ENST00000268489.5:c.6938G>A	p.Arg2313His	p.R2313H	ENST00000268489	NM_006885.3	2313	cGt/cAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396208	139396208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772843787		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	60	595	1	ENST00000277541.6:c.5630G>A	p.Arg1877His	p.R1877H	ENST00000277541	NM_017617.3	1877	cGc/cAc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965806	18965806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	66	644	1	ENST00000262803.5:c.1384C>T	p.Arg462Cys	p.R462C	ENST00000262803	NM_002911.3	462	Cgc/Tgc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2126495	2126495	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	75	542	0	ENST00000219476.3:c.2746C>A	p.Leu916Met	p.L916M	ENST00000219476	NM_000548.3	916	Ctg/Atg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28578210	28578210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	79	530	0	ENST00000241453.7:c.2961G>T	p.Gln987His	p.Q987H	ENST00000241453	NM_004119.2	987	caG/caT																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36931993	36931993	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770842748		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	87	733	0	ENST00000361632.4:c.2476C>T	p.Arg826Trp	p.R826W	ENST00000361632		826	Cgg/Tgg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390074	89390074	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201468736		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	56	380	0	ENST00000336596.2:c.823C>T	p.Pro275Ser	p.P275S	ENST00000336596	NM_005233.5	275	Cca/Tca																																																																															
LATS1	9113	MSKCC	GRCh37	6	150016342	150016342	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1167340767		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	49	283	0	ENST00000253339.5:c.364G>A	p.Ala122Thr	p.A122T	ENST00000253339		122	Gct/Act																																																																															
ATR	545	MSKCC	GRCh37	3	142177844	142177844	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	71	406	0	ENST00000350721.4:c.7459A>G	p.Thr2487Ala	p.T2487A	ENST00000350721	NM_001184.3	2487	Act/Gct																																																																															
MST1	4485	MSKCC	GRCh37	3	49725298	49725298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	59	357	0	ENST00000449682.2:c.127C>T	p.Leu43Phe	p.L43F	ENST00000449682	NM_020998.3	43	Ctc/Ttc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199865	138199865	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	94	670	0	ENST00000237289.4:c.1283A>G	p.Glu428Gly	p.E428G	ENST00000237289	NM_001270507.1	428	gAg/gGg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027441	48027442	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	82	513	0	ENST00000234420.5:c.2319_2320del	p.Leu774LysfsTer10	p.L774Kfs*10	ENST00000234420	NM_000179.2	773	ctCCta/ctta																																																																															
MPL	4352	MSKCC	GRCh37	1	43812555	43812555	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	99	589	0	ENST00000372470.3:c.1258G>T	p.Glu420Ter	p.E420*	ENST00000372470	NM_005373.2	420	Gag/Tag																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808383	1808383	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	90	794	0	ENST00000260795.2:c.2141A>T	p.Asp714Val	p.D714V	ENST00000260795		714	gAc/gTc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462098	120462098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	90	636	0	ENST00000256646.2:c.5618C>T	p.Thr1873Ile	p.T1873I	ENST00000256646	NM_024408.3	1873	aCa/aTa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156830751	156830751	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs80356673		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	14	446	0	ENST00000524377.1:c.25C>T	p.Gln9Ter	p.Q9*	ENST00000524377	NM_002529.3	9	Cag/Tag																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202798	128202798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	77	636	0	ENST00000341105.2:c.922C>T	p.Arg308Trp	p.R308W	ENST00000341105	NM_032638.4	308	Cgg/Tgg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027441	48027459	+	frameshift_variant	Frame_Shift_Del	DEL	CCTAAAGCAATGGCTTTGT	CCTAAAGCAATGGCTTTGT	TA			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	82	542	1	ENST00000234420.5:c.2319_2337delinsTA	p.Leu774SerfsTer5	p.L774Sfs*5	ENST00000234420	NM_000179.2	773	ctCCTAAAGCAATGGCTTTGT/ctTA																																																																															
MED12	9968	MSKCC	GRCh37	X	70353039	70353039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	53	523	0	ENST00000374080.3:c.4594G>A	p.Ala1532Thr	p.A1532T	ENST00000374080		1532	Gca/Aca																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99472856	99472856	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	88	472	0	ENST00000268035.6:c.2852T>C	p.Leu951Ser	p.L951S	ENST00000268035	NM_000875.3	951	tTg/tCg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135047	11135047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	67	488	0	ENST00000344626.4:c.3014G>A	p.Arg1005Gln	p.R1005Q	ENST00000344626	NM_003072.3	1005	cGa/cAa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396197	396197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	85	608	0	ENST00000262320.3:c.829G>A	p.Ala277Thr	p.A277T	ENST00000262320	NM_003502.3	277	Gcc/Acc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991558	72991558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	79	572	0	ENST00000268489.5:c.2487G>A	p.Met829Ile	p.M829I	ENST00000268489	NM_006885.3	829	atG/atA																																																																															
CDK6	1021	MSKCC	GRCh37	7	92462564	92462564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	101	535	0	ENST00000265734.4:c.74G>T	p.Gly25Val	p.G25V	ENST00000265734	NM_001259.6	25	gGg/gTg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44515806	44515807	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	57	384	0	ENST00000291552.4:c.246dup	p.Glu83Ter	p.E83*	ENST00000291552	NM_006758.2	82	-/T																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819341	3819341	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1436471058		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	95	581	0	ENST00000262367.5:c.2894C>G	p.Ala965Gly	p.A965G	ENST00000262367	NM_004380.2	965	gCa/gGa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682291	37682291	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760667462		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	95	638	0	ENST00000447079.4:c.3482C>T	p.Thr1161Met	p.T1161M	ENST00000447079	NM_015083.1	1161	aCg/aTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923435	9923435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	73	522	0	ENST00000330684.3:c.1852C>T	p.Pro618Ser	p.P618S	ENST00000330684	NM_001134407.1	618	Cct/Tct																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125523665	125523665	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	42	240	0	ENST00000428830.2:c.1258A>T	p.Arg420Ter	p.R420*	ENST00000428830	NM_001114121.2	420	Aga/Tga																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39573237	39573237	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745792896		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	39	232	0	ENST00000262039.4:c.718G>A	p.Gly240Ser	p.G240S	ENST00000262039	NM_002647.2	240	Ggt/Agt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15973563	15973563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	34	574	0	ENST00000268712.3:c.4429G>A	p.Asp1477Asn	p.D1477N	ENST00000268712	NM_006311.3	1477	Gat/Aat																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2047288	2047288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	13	109	0	ENST00000349721.2:c.850G>A	p.Gly284Ser	p.G284S	ENST00000349721	NM_003070.3	284	Ggc/Agc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44514823	44514823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	90	605	0	ENST00000291552.4:c.424G>A	p.Ala142Thr	p.A142T	ENST00000291552	NM_006758.2	142	Gcc/Acc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207031	1207031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1288190366		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	121	614	0	ENST00000326873.7:c.119G>A	p.Arg40His	p.R40H	ENST00000326873	NM_000455.4	40	cGc/cAc																																																																															
RET	5979	MSKCC	GRCh37	10	43612036	43612036	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	97	681	0	ENST00000355710.3:c.2141A>G	p.Asp714Gly	p.D714G	ENST00000355710	NM_020975.4	714	gAt/gGt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213367	36213367	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201268190		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	87	642	0	ENST00000222270.7:c.2564G>A	p.Arg855Gln	p.R855Q	ENST00000222270	NM_014727.1	855	cGg/cAg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933271	49933271	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199970256		P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	124	707	0	ENST00000296474.3:c.2839C>T	p.Arg947Trp	p.R947W	ENST00000296474	NM_002447.2	947	Cgg/Tgg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027445	48027459	+	inframe_deletion	In_Frame_Del	DEL	AAGCAATGGCTTTGT	AAGCAATGGCTTTGT	-			P-0062596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	82	522	0	ENST00000234420.5:c.2323_2337del	p.Lys775_Cys779del	p.K775_C779del	ENST00000234420	NM_000179.2	775	AAGCAATGGCTTTGT/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0062883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	107	426	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0062883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	34	469	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112174835	112174835	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0062883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	149	503	0	ENST00000257430.4:c.3544A>T	p.Lys1182Ter	p.K1182*	ENST00000257430	NM_000038.5	1182	Aaa/Taa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775955	9775955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	128	511	0	ENST00000377346.4:c.419G>A	p.Arg140His	p.R140H	ENST00000377346	NM_005026.3	140	cGc/cAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508328	106508328	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs769318398		P-0062883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	73	502	0	ENST00000359195.3:c.322G>T	p.Glu108Ter	p.E108*	ENST00000359195	NM_002649.2	108	Gag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165199	47165199	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	41	435	0	ENST00000409792.3:c.927G>C	p.Lys309Asn	p.K309N	ENST00000409792	NM_014159.6	309	aaG/aaC																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925325	114925325	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	102	370	1	ENST00000543371.1:c.1403A>T	p.Lys468Met	p.K468M	ENST00000543371	NM_001198531.1	468	aAg/aTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249455	153249468	+	frameshift_variant	Frame_Shift_Del	DEL	CCGATCTGTAGATC	CCGATCTGTAGATC	-			P-0062883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	26	426	0	ENST00000281708.4:c.1310_1323del	p.Gly437AspfsTer30	p.G437Dfs*30	ENST00000281708	NM_033632.3	437	gGATCTACAGATCGG/g																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0063554-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			344	54	258	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197848	66197848	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0063554-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			269	28	194	0	ENST00000273854.3:c.2853-2A>G		p.X951_splice	ENST00000273854	NM_004439.5	951																																																																																
PRKD1	5587	MSKCC	GRCh37	14	30105682	30105682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063554-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			383	23	264	0	ENST00000331968.5:c.1004C>T	p.Ala335Val	p.A335V	ENST00000331968	NM_002742.2	335	gCa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578405	+	frameshift_variant	Frame_Shift_Ins	INS	CAG	CAG	GGCC			P-0063554-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			382	49	288	1	ENST00000269305.4:c.525_527delinsGGCC	p.Cys176AlafsTer5	p.C176Afs*5	ENST00000269305	NM_001126112.2	175	cgCTGc/cgGGCCc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			529	75	344	0	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			777	142	413	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			626	235	490	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			675	98	397	1	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			484	102	334	0	ENST00000268712.3:c.1573dup	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			721	108	413	1	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100425	8100425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			743	131	467	1	ENST00000346208.3:c.404del	p.Pro135ArgfsTer60	p.P135Rfs*60	ENST00000346208		133	taC/ta																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209616	98209617	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761353734		P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			586	48	381	0	ENST00000331920.6:c.3921dup	p.Arg1308GlnfsTer17	p.R1308Qfs*17	ENST00000331920	NM_000264.3	1307	-/C																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			755	96	341	0	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			642	218	441	5	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			754	122	456	0	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154241	2154242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755455183		P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			761	88	421	2	ENST00000434045.2:c.686dup	p.Glu230ArgfsTer50	p.E230Rfs*50	ENST00000434045	NM_001127598.1	229	cca/ccCa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919935	50919935	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1044937882		P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			553	92	370	0	ENST00000440232.2:c.3022C>T	p.Arg1008Cys	p.R1008C	ENST00000440232	NM_002691.3	1008	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604806	48604806	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			602	142	370	0	ENST00000342988.3:c.1628T>C	p.Met543Thr	p.M543T	ENST00000342988	NM_005359.5	543	aTg/aCg																																																																															
EP300	2033	MSKCC	GRCh37	22	41574679	41574679	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			765	146	481	0	ENST00000263253.7:c.6970del	p.His2324ThrfsTer29	p.H2324Tfs*29	ENST00000263253	NM_001429.3	2322	Ccc/cc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259288	36259288	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs927005033		P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			604	127	360	0	ENST00000300305.3:c.203C>T	p.Ala68Val	p.A68V	ENST00000300305		68	gCc/gTc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940112	49940112	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs767239578		P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			704	123	394	1	ENST00000296474.3:c.931del	p.Ala311ProfsTer27	p.A311Pfs*27	ENST00000296474	NM_002447.2	311	Gcc/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			489	86	307	0	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
AKT2	208	MSKCC	GRCh37	19	40741986	40741986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			732	125	425	0	ENST00000392038.2:c.986G>A	p.Arg329Gln	p.R329Q	ENST00000392038	NM_001626.4	329	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			804	134	446	5	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817720	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			527	103	353	0	ENST00000262367.5:c.3250dup	p.Ile1084AsnfsTer3	p.I1084Nfs*3	ENST00000262367	NM_004380.2	1084	atc/aAtc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110004	115110004	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1201751425		P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			661	97	402	0	ENST00000257566.3:c.1874G>A	p.Arg625His	p.R625H	ENST00000257566	NM_016569.3	625	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440135	49440136	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			728	192	401	0	ENST00000301067.7:c.4490_4491del	p.His1497LeufsTer30	p.H1497Lfs*30	ENST00000301067	NM_003482.3	1497	cAC/c																																																																															
TERT	7015	MSKCC	GRCh37	5	1278818	1278818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			684	130	388	0	ENST00000310581.5:c.2224C>T	p.Arg742Cys	p.R742C	ENST00000310581	NM_198253.2	742	Cgt/Tgt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910608	50910608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			711	135	386	0	ENST00000440232.2:c.1711C>T	p.Pro571Ser	p.P571S	ENST00000440232	NM_002691.3	571	Ccc/Tcc																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518464	69518464	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1318349402		P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			435	84	249	0	ENST00000294312.3:c.181C>T	p.Arg61Cys	p.R61C	ENST00000294312	NM_005117.2	61	Cgc/Tgc																																																																															
CTR9	9646	MSKCC	GRCh37	11	10791848	10791848	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs138881233		P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			502	107	399	2	ENST00000361367.2:c.2201A>G	p.Gln734Arg	p.Q734R	ENST00000361367	NM_014633.3	734	cAg/cGg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803480	32803480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			843	115	370	0	ENST00000374899.4:c.679G>A	p.Glu227Lys	p.E227K	ENST00000374899	NM_018833.2	227	Gag/Aag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021095	31021095	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			629	114	365	0	ENST00000375687.4:c.1094T>C	p.Leu365Ser	p.L365S	ENST00000375687	NM_015338.5	365	tTg/tCg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396658	396658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			689	121	402	0	ENST00000262320.3:c.368G>A	p.Gly123Asp	p.G123D	ENST00000262320	NM_003502.3	123	gGc/gAc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027089	48027089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			583	95	360	0	ENST00000234420.5:c.1967C>A	p.Pro656His	p.P656H	ENST00000234420	NM_000179.2	656	cCc/cAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139403346	139403346	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			613	101	373	0	ENST00000277541.6:c.3147G>T	p.Gln1049His	p.Q1049H	ENST00000277541	NM_017617.3	1049	caG/caT																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246305	41246305	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			459	89	381	0	ENST00000357654.3:c.1243G>T	p.Val415Phe	p.V415F	ENST00000357654	NM_007294.3	415	Gtt/Ttt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261238	16261238	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			729	116	397	0	ENST00000375759.3:c.8503A>G	p.Ser2835Gly	p.S2835G	ENST00000375759	NM_015001.2	2835	Agc/Ggc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127681	64127681	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			648	128	366	0	ENST00000334205.4:c.177del	p.Lys60SerfsTer5	p.K60Sfs*5	ENST00000334205	NM_003942.2	58	gcG/gc																																																																															
STK19	8859	MSKCC	GRCh37	6	31939894	31939894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1005	105	394	0	ENST00000375331.2:c.121G>A	p.Gly41Ser	p.G41S	ENST00000375331	NM_004197.1	41	Ggc/Agc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99454561	99454561	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			501	90	329	0	ENST00000268035.6:c.1480C>A	p.His494Asn	p.H494N	ENST00000268035	NM_000875.3	494	Cat/Aat																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687398	37687398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			650	120	380	0	ENST00000447079.4:c.4302G>T	p.Glu1434Asp	p.E1434D	ENST00000447079	NM_015083.1	1434	gaG/gaT																																																																															
APC	324	MSKCC	GRCh37	5	112173970	112173970	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			632	78	377	0	ENST00000257430.4:c.2679A>C	p.Glu893Asp	p.E893D	ENST00000257430	NM_000038.5	893	gaA/gaC																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89355069	89355069	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1464294383		P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			665	109	363	0	ENST00000301030.4:c.611C>T	p.Ala204Val	p.A204V	ENST00000301030	NM_001256183.1	204	gCg/gTg																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20148646	20148647	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCA			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			375	26	240	0	ENST00000379607.5:c.414_416dup	p.Asp138dup	p.D138dup	ENST00000379607	NM_001412.3	138	gaa/gaTGAa																																																																															
ATRX	546	MSKCC	GRCh37	X	76919001	76919001	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			514	82	331	0	ENST00000373344.5:c.3990A>T	p.Glu1330Asp	p.E1330D	ENST00000373344	NM_000489.3	1330	gaA/gaT																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52722983	52722984	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			737	88	394	0	ENST00000322088.6:c.1172_1173del	p.Val391GlufsTer22	p.V391Efs*22	ENST00000322088	NM_014225.5	390	TGt/t																																																																															
ABL1	25	MSKCC	GRCh37	9	133748303	133748303	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1167422184		P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			517	110	346	0	ENST00000318560.5:c.964A>G	p.Asn322Asp	p.N322D	ENST00000318560	NM_005157.4	322	Aac/Gac																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29280041	29280041	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			769	163	452	0	ENST00000544604.2:c.287G>C	p.Gly96Ala	p.G96A	ENST00000544604	NM_001206998.1	96	gGc/gCc																																																																															
TET1	80312	MSKCC	GRCh37	10	70404749	70404749	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			466	88	341	0	ENST00000373644.4:c.2263A>G	p.Thr755Ala	p.T755A	ENST00000373644	NM_030625.2	755	Acc/Gcc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			226	113	299	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106336	27106337	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			497	226	427	0	ENST00000324856.7:c.5952_5953del	p.Ser1985GlnfsTer13	p.S1985Qfs*13	ENST00000324856	NM_006015.4	1983	TGt/t																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39322556	39322556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761415462		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			294	102	386	0	ENST00000373001.3:c.436G>A	p.Ala146Thr	p.A146T	ENST00000373001	NM_022157.3	146	Gca/Aca																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925318	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			303	175	320	1	ENST00000543371.1:c.1402_1403del	p.Lys468ValfsTer8	p.K468Vfs*8	ENST00000543371	NM_001198531.1	465	agAAaa/agaa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852218	63852218	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs916811022		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			498	208	463	0	ENST00000279873.7:c.2996G>A	p.Arg999Gln	p.R999Q	ENST00000279873	NM_032199.2	999	cGg/cAg																																																																															
ATM	472	MSKCC	GRCh37	11	108123629	108123629	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148191382		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			188	78	279	0	ENST00000278616.4:c.1888G>A	p.Val630Met	p.V630M	ENST00000278616	NM_000051.3	630	Gtg/Atg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	475260	475260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			261	133	324	0	ENST00000399788.2:c.377G>A	p.Ser126Asn	p.S126N	ENST00000399788	NM_001042603.1	126	aGc/aAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			501	231	517	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	222	370	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57857553	57857553	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	166	427	0	ENST00000228682.2:c.79G>C	p.Ala27Pro	p.A27P	ENST00000228682	NM_005269.2	27	Gcc/Ccc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			483	226	451	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822563	72822564	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC	rs376311468		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			504	166	508	0	ENST00000268489.5:c.9609_9611dup	p.Gln3204dup	p.Q3204dup	ENST00000268489	NM_006885.3	3204	caa/caGCAa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351057	89351057	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			410	228	421	0	ENST00000301030.4:c.1893del	p.Lys631AsnfsTer22	p.K631Nfs*22	ENST00000301030	NM_001256183.1	631	aaA/aa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686907	37686907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	149	356	0	ENST00000447079.4:c.3811G>A	p.Gly1271Arg	p.G1271R	ENST00000447079	NM_015083.1	1271	Gga/Aga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687093	37687093	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142347393		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	205	439	0	ENST00000447079.4:c.3997C>T	p.Arg1333Cys	p.R1333C	ENST00000447079	NM_015083.1	1333	Cgt/Tgt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			544	242	560	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59885827	59885827	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs587781655		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			274	93	307	0	ENST00000259008.2:c.918+1G>A		p.X306_splice	ENST00000259008	NM_032043.2	306																																																																																
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			494	213	530	3	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs1427441061		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	244	502	0	ENST00000269305.4:c.560-2A>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15284969	15284969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	182	433	0	ENST00000263388.2:c.4646C>T	p.Ala1549Val	p.A1549V	ENST00000263388	NM_000435.2	1549	gCg/gTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353815	15353815	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780028668		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			167	74	186	0	ENST00000263377.2:c.3065C>T	p.Pro1022Leu	p.P1022L	ENST00000263377	NM_058243.2	1022	cCg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214871	36214871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			411	202	388	2	ENST00000222270.7:c.3302del	p.Pro1101LeufsTer81	p.P1101Lfs*81	ENST00000222270	NM_014727.1	1099	ggC/gg																																																																															
AXL	558	MSKCC	GRCh37	19	41765647	41765647	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1181583644		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			449	193	487	3	ENST00000301178.4:c.2528del	p.Pro843GlnfsTer113	p.P843Qfs*113	ENST00000301178	NM_021913.4	841	gaC/ga																																																																															
CIC	23152	MSKCC	GRCh37	19	42793160	42793160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			451	217	515	0	ENST00000575354.2:c.1052G>A	p.Arg351Gln	p.R351Q	ENST00000575354	NM_015125.3	351	cGg/cAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212248	5212248	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776677741		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			510	171	513	0	ENST00000357368.4:c.4783C>T	p.Arg1595Cys	p.R1595C	ENST00000357368	NM_002850.3	1595	Cgc/Tgc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716250	52716250	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769334090		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			483	230	468	0	ENST00000322088.6:c.694G>A	p.Ala232Thr	p.A232T	ENST00000322088	NM_014225.5	232	Gcc/Acc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190682810	190682810	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			223	81	259	0	ENST00000441310.2:c.492del	p.Lys164AsnfsTer6	p.K164Nfs*6	ENST00000441310	NM_000534.4	162	gcA/gc																																																																															
CASP8	841	MSKCC	GRCh37	2	202141587	202141587	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771150445		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			350	137	352	0	ENST00000358485.4:c.875G>A	p.Arg292Gln	p.R292Q	ENST00000358485	NM_001080125.1	292	cGg/cAg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47657020	47657020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63751108		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			322	117	272	0	ENST00000233146.2:c.1216C>T	p.Arg406Ter	p.R406*	ENST00000233146	NM_000251.2	406	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			396	183	372	3	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45657044	45657044	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768853378		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			456	205	371	0	ENST00000407780.3:c.112G>A	p.Ala38Thr	p.A38T	ENST00000407780	NM_001283052.1	38	Gct/Act																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138382756	138382756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	118	332	0	ENST00000289153.2:c.2788del	p.Thr930LeufsTer62	p.T930Lfs*62	ENST00000289153	NM_006219.2	930	Act/ct																																																																															
BCL6	604	MSKCC	GRCh37	3	187446269	187446270	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770320988		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			497	210	480	0	ENST00000232014.4:c.1418dup	p.Lys474GlufsTer26	p.K474Efs*26	ENST00000232014	NM_001130845.1	473	ccg/ccCg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	260	386	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
MST1R	4486	MSKCC	GRCh37	3	49939932	49939933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			501	195	505	0	ENST00000296474.3:c.1110dup	p.Ile371HisfsTer2	p.I371Hfs*2	ENST00000296474	NM_002447.2	370	-/C																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52668619	52668619	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	103	288	0	ENST00000394830.3:c.1300C>T	p.Arg434Ter	p.R434*	ENST00000394830	NM_018313.4	434	Cga/Tga																																																																															
TET2	54790	MSKCC	GRCh37	4	106155755	106155756	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	123	413	0	ENST00000380013.4:c.664_665dup	p.Gly223MetfsTer28	p.G223Mfs*28	ENST00000380013	NM_001127208.2	219	gaa/gaACa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			272	97	307	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521354	187521354	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1268188397		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	209	345	0	ENST00000441802.2:c.11801C>T	p.Ser3934Leu	p.S3934L	ENST00000441802	NM_005245.3	3934	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112173394	112173394	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			261	111	402	0	ENST00000257430.4:c.2107del	p.Ala703GlnfsTer15	p.A703Qfs*15	ENST00000257430	NM_000038.5	701	atG/at																																																																															
APC	324	MSKCC	GRCh37	5	112173561	112173561	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			277	138	378	0	ENST00000257430.4:c.2274del	p.Ala759ProfsTer2	p.A759Pfs*2	ENST00000257430	NM_000038.5	757	cAa/ca																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			415	174	405	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112179567	112179567	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs538289470		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	144	412	0	ENST00000257430.4:c.8276G>A	p.Arg2759His	p.R2759H	ENST00000257430	NM_000038.5	2759	cGt/cAt																																																																															
MSH3	4437	MSKCC	GRCh37	5	80064769	80064769	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs770330684		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			218	102	321	0	ENST00000265081.6:c.2200C>T	p.Arg734Ter	p.R734*	ENST00000265081	NM_002439.4	734	Cga/Tga																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239471	31239471	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs281860388		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			454	230	530	0	ENST00000376228.5:c.248A>G	p.Tyr83Cys	p.Y83C	ENST00000376228	NM_002117.5	83	tAt/tGt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323266	31323266	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			428	261	387	0	ENST00000412585.2:c.723G>A	p.Trp241Ter	p.W241*	ENST00000412585	NM_005514.6	241	tgG/tgA																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323353	31323354	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			480	131	396	0	ENST00000412585.2:c.635_636del	p.His212ArgfsTer8	p.H212Rfs*8	ENST00000412585	NM_005514.6	212	cAC/c																																																																															
POT1	25913	MSKCC	GRCh37	7	124532409	124532409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			216	37	247	0	ENST00000357628.3:c.35C>T	p.Thr12Ile	p.T12I	ENST00000357628	NM_015450.2	12	aCa/aTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012386	152012386	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			305	70	327	1	ENST00000262189.6:c.427del	p.Ser143ValfsTer3	p.S143Vfs*3	ENST00000262189	NM_170606.2	143	Agt/gt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141561430	141561430	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			449	184	437	0	ENST00000220592.5:c.1375del	p.Gln459SerfsTer9	p.Q459Sfs*9	ENST00000220592	NM_012154.3	459	Cag/ag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738767	145738768	+	splice_donor_variant,frameshift_variant	Splice_Site	DEL	CG	CG	T			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			587	238	672	1	ENST00000428558.2:c.2296_2297delinsA		p.X766_splice	ENST00000428558	NM_004260.3	766	CGg/Ag																																																																															
SYK	6850	MSKCC	GRCh37	9	93650881	93650881	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200438123		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			364	141	353	0	ENST00000375746.1:c.1807G>A	p.Asp603Asn	p.D603N	ENST00000375746	NM_001174167.1	603	Gat/Aat																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			406	142	454	0	ENST00000331920.6:c.3921del	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			487	188	424	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841231	15841236	+	inframe_deletion	In_Frame_Del	DEL	AGCCGG	AGCCGG	-	rs768273733		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			252	192	298	2	ENST00000307771.7:c.1338_1343del	p.Ser447_Arg448del	p.S447_R448del	ENST00000307771	NM_005089.3	439	AGCCGG/-																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106880	27106880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			486	200	493	0	ENST00000324856.7:c.6491G>A	p.Arg2164Gln	p.R2164Q	ENST00000324856	NM_006015.4	2164	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925318	114925318	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			312	175	324	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	466	Aaa/aa																																																																															
PGR	5241	MSKCC	GRCh37	11	100999516	100999516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			378	175	486	0	ENST00000325455.5:c.286G>A	p.Ala96Thr	p.A96T	ENST00000325455	NM_001202474.3	96	Gct/Act																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041831	14041831	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			583	55	411	0	ENST00000311895.7:c.2378T>C	p.Leu793Pro	p.L793P	ENST00000311895	NM_005236.2	793	cTt/cCt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3794909	3794911	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			317	120	312	0	ENST00000262367.5:c.3966_3968del	p.Asn1322del	p.N1322del	ENST00000262367	NM_004380.2	1322	aaCAAa/aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68857445	68857445	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780118		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			549	167	376	0	ENST00000261769.5:c.2080G>A	p.Val694Ile	p.V694I	ENST00000261769	NM_004360.3	694	Gtc/Atc																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544590	86544590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	179	437	0	ENST00000262426.4:c.415C>T	p.Arg139Trp	p.R139W	ENST00000262426	NM_001451.2	139	Cgg/Tgg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40468838	40468838	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			410	183	344	0	ENST00000264657.5:c.2226A>T	p.Glu742Asp	p.E742D	ENST00000264657	NM_139276.2	742	gaA/gaT																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61324114	61324114	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			217	85	303	0	ENST00000283752.5:c.719A>C	p.Asp240Ala	p.D240A	ENST00000283752	NM_006919.2	240	gAt/gCt																																																																															
STK11	6794	MSKCC	GRCh37	19	1226636	1226636	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			321	124	348	0	ENST00000326873.7:c.1292A>G	p.Lys431Arg	p.K431R	ENST00000326873	NM_000455.4	431	aAg/aGg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222367	2222367	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			487	165	477	0	ENST00000398665.3:c.3199C>A	p.Leu1067Met	p.L1067M	ENST00000398665	NM_032482.2	1067	Ctg/Atg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403197	213403197	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373308672		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			398	196	370	0	ENST00000342788.4:c.58G>A	p.Val20Ile	p.V20I	ENST00000342788	NM_005235.2	20	Gtc/Atc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47643434	47643434	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs12476364		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			230	89	261	0	ENST00000233146.2:c.943-1G>T		p.X315_splice	ENST00000233146	NM_000251.2	315																																																																																
REL	5966	MSKCC	GRCh37	2	61149442	61149442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			264	80	417	0	ENST00000295025.8:c.1632G>A	p.Met544Ile	p.M544I	ENST00000295025	NM_002908.2	544	atG/atA																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022506	31022506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			402	196	437	0	ENST00000375687.4:c.1991G>T	p.Ser664Ile	p.S664I	ENST00000375687	NM_015338.5	664	aGc/aTc																																																																															
SRC	6714	MSKCC	GRCh37	20	36031628	36031628	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1342906456		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			420	174	448	0	ENST00000358208.4:c.1457G>A	p.Cys486Tyr	p.C486Y	ENST00000358208		486	tGc/tAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41420018	41420019	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			528	148	423	0	ENST00000373198.4:c.302dup	p.His101GlnfsTer13	p.H101Qfs*13	ENST00000373198	NM_133170.3	101	cac/caAc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264347	46264348	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			405	165	379	1	ENST00000371998.3:c.1400dup	p.His468ThrfsTer19	p.H468Tfs*19	ENST00000371998		465	agc/agCc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445527	29445527	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1485868213		P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	47	484	0	ENST00000544604.2:c.1358G>A	p.Gly453Asp	p.G453D	ENST00000544604	NM_001206998.1	453	gGc/gAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41574471	41574471	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			427	183	459	0	ENST00000263253.7:c.6756G>T	p.Glu2252Asp	p.E2252D	ENST00000263253	NM_001429.3	2252	gaG/gaT																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52661388	52661388	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			274	154	309	0	ENST00000394830.3:c.1444-2A>G		p.X482_splice	ENST00000394830	NM_018313.4	482																																																																																
ALB	213	MSKCC	GRCh37	4	74280858	74280858	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			286	118	325	0	ENST00000295897.4:c.1165G>T	p.Asp389Tyr	p.D389Y	ENST00000295897	NM_000477.5	389	Gat/Tat																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149495456	149495457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			425	189	507	0	ENST00000261799.4:c.3190dup	p.Leu1064ProfsTer14	p.L1064Pfs*14	ENST00000261799	NM_002609.3	1064	ctg/cCtg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517567	176517567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	162	394	0	ENST00000292408.4:c.268A>G	p.Ser90Gly	p.S90G	ENST00000292408	NM_213647.1	90	Agc/Ggc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638066	176638066	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			281	109	386	0	ENST00000439151.2:c.2666T>G	p.Leu889Arg	p.L889R	ENST00000439151	NM_022455.4	889	cTt/cGt																																																																															
SDHA	6389	MSKCC	GRCh37	5	251536	251536	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			221	121	231	0	ENST00000264932.6:c.1747G>T	p.Glu583Ter	p.E583*	ENST00000264932	NM_004168.2	583	Gag/Tag																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911297	29911297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			369	142	352	0	ENST00000376809.5:c.596G>A	p.Gly199Glu	p.G199E	ENST00000376809	NM_002116.7	199	gGg/gAg																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239407	31239409	+	missense_variant	Missense_Mutation	ONP	GTT	GTT	TTC			P-0065951-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			468	198	529	1	ENST00000376228.5:c.310_312delinsGAA	p.Asn104Glu	p.N104E	ENST00000376228	NM_002117.5	104	AAC/GAA																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			410	169	350	3	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			297	144	324	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460516	149460516	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			384	163	311	0	ENST00000286301.3:c.121C>T	p.Arg41Ter	p.R41*	ENST00000286301	NM_005211.3	41	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			85	20	101	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			395	110	361	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5265168	5265168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			320	146	371	0	ENST00000357368.4:c.419G>A	p.Gly140Asp	p.G140D	ENST00000357368	NM_002850.3	140	gGc/gAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			188	70	265	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57480483	57480483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			328	163	260	0	ENST00000371085.3:c.478C>T	p.Arg160Cys	p.R160C	ENST00000371085	NM_000516.4	160	Cgt/Tgt																																																																															
EP300	2033	MSKCC	GRCh37	22	41554467	41554467	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1489896703		P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	43	220	0	ENST00000263253.7:c.3553A>G	p.Ile1185Val	p.I1185V	ENST00000263253	NM_001429.3	1185	Ata/Gta																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			265	56	227	2	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			342	156	236	0	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																															
B2M	567	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			245	106	287	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
IRS1	3667	MSKCC	GRCh37	2	227661663	227661664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761880048		P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			288	122	384	8	ENST00000305123.5:c.1791dup	p.His598AlafsTer13	p.H598Afs*13	ENST00000305123	NM_005544.2	597	-/G																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119780	70119781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	89	284	0	ENST00000245479.2:c.788dup	p.Arg264GlnfsTer32	p.R264Qfs*32	ENST00000245479	NM_000346.3	261	gag/gaGg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411937	63411937	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			408	156	423	0	ENST00000330258.3:c.1230G>A	p.Trp410Ter	p.W410*	ENST00000330258	NM_152424.3	410	tgG/tgA																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729400	41729400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			554	39	335	0	ENST00000242208.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000242208	NM_002192.2	377	Cgc/Tgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685289	89685289	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			172	81	180	0	ENST00000371953.3:c.188del	p.Asn63ThrfsTer36	p.N63Tfs*36	ENST00000371953	NM_000314.4	62	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112164565	112164566	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	104	232	0	ENST00000257430.4:c.1643dup	p.Leu548PhefsTer12	p.L548Ffs*12	ENST00000257430	NM_000038.5	547	gtt/gTtt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273901	10273901	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			301	129	296	0	ENST00000330684.3:c.368C>A	p.Pro123His	p.P123H	ENST00000330684	NM_001134407.1	123	cCc/cAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879593	151879594	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC	rs749417254		P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			648	71	312	0	ENST00000262189.6:c.5349_5351dup	p.Gln1787dup	p.Q1787dup	ENST00000262189	NM_170606.2	1787	caa/caGCAa																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			366	137	365	0	ENST00000257430.4:c.4665_4666dup	p.Thr1556LysfsTer10	p.T1556Kfs*10	ENST00000257430	NM_000038.5	1554	gaa/gAAaa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109887	115109887	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762342872		P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			283	143	336	0	ENST00000257566.3:c.1991C>T	p.Ala664Val	p.A664V	ENST00000257566	NM_016569.3	664	gCg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878764	151878764	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			555	103	371	0	ENST00000262189.6:c.6181T>C	p.Ser2061Pro	p.S2061P	ENST00000262189	NM_170606.2	2061	Tca/Cca																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020562	69020562	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			299	40	235	0	ENST00000288368.4:c.2934G>T	p.Glu978Asp	p.E978D	ENST00000288368	NM_024870.2	978	gaG/gaT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187519210	187519210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			405	54	249	0	ENST00000441802.2:c.12173C>T	p.Ser4058Phe	p.S4058F	ENST00000441802	NM_005245.3	4058	tCc/tTc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53225096	53225096	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			419	37	272	0	ENST00000375401.3:c.3120+2T>C		p.X1040_splice	ENST00000375401	NM_004187.3	1040																																																																																
NF1	4763	MSKCC	GRCh37	17	29663908	29663908	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			349	64	236	0	ENST00000358273.4:c.6403A>G	p.Thr2135Ala	p.T2135A	ENST00000358273	NM_001042492.2	2135	Act/Gct																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212576814	212576814	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs528780505		P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			193	30	219	0	ENST00000342788.4:c.1085T>A	p.Ile362Asn	p.I362N	ENST00000342788	NM_005235.2	362	aTc/aAc																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873389	136873389	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs757881953		P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			346	143	296	0	ENST00000241393.3:c.109A>G	p.Asn37Asp	p.N37D	ENST00000241393	NM_003467.2	37	Aat/Gat																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123504119	123504119	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			223	31	240	0	ENST00000371139.4:c.295C>T	p.Gln99Ter	p.Q99*	ENST00000371139	NM_001114937.2	99	Cag/Tag																																																																															
RIT1	6016	MSKCC	GRCh37	1	155880453	155880453	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			364	38	261	0	ENST00000368323.3:c.100A>G	p.Lys34Glu	p.K34E	ENST00000368323	NM_006912.5	34	Aag/Gag																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843485	156843485	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			335	167	327	0	ENST00000524377.1:c.911C>A	p.Ser304Tyr	p.S304Y	ENST00000524377	NM_002529.3	304	tCt/tAt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180654	56180654	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			183	20	226	0	ENST00000399503.3:c.3982+1G>T		p.X1328_splice	ENST00000399503	NM_005921.1	1328																																																																																
GAB2	9846	MSKCC	GRCh37	11	77937994	77937994	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			376	183	312	0	ENST00000361507.4:c.724A>C	p.Ser242Arg	p.S242R	ENST00000361507	NM_080491.2	242	Agt/Cgt																																																																															
NBN	4683	MSKCC	GRCh37	8	90965819	90965819	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			183	74	267	0	ENST00000265433.3:c.1498T>A	p.Leu500Met	p.L500M	ENST00000265433	NM_002485.4	500	Ttg/Atg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874147	151874148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			471	67	344	1	ENST00000262189.6:c.8389_8390dup	p.Glu2798ArgfsTer26	p.E2798Rfs*26	ENST00000262189	NM_170606.2	2797	aag/aaAAg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523075	25523075	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			375	146	289	0	ENST00000264709.3:c.110A>T	p.Glu37Val	p.E37V	ENST00000264709	NM_175629.2	37	gAg/gTg																																																																															
ERG	2078	MSKCC	GRCh37	21	39755782	39755782	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			385	46	292	0	ENST00000288319.7:c.983G>T	p.Ser328Ile	p.S328I	ENST00000288319	NM_182918.3	328	aGc/aTc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123245024	123245024	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			447	48	331	0	ENST00000358487.5:c.2080T>C	p.Trp694Arg	p.W694R	ENST00000358487	NM_000141.4	694	Tgg/Cgg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422558	47422558	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1421131228		P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			473	48	309	0	ENST00000404338.3:c.626A>G	p.Tyr209Cys	p.Y209C	ENST00000404338	NM_004491.4	209	tAc/tGc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45795088	45795088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			543	53	288	0	ENST00000372115.3:c.1498T>C	p.Ser500Pro	p.S500P	ENST00000372115	NM_001048171.1	500	Tcc/Ccc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259439	89259439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			345	139	320	0	ENST00000336596.2:c.583G>T	p.Val195Leu	p.V195L	ENST00000336596	NM_005233.5	195	Gtg/Ttg																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630360	67630360	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			170	78	225	0	ENST00000272342.5:c.550del	p.Thr184HisfsTer9	p.T184Hfs*9	ENST00000272342	NM_019002.3	182	ttA/tt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3823903	3823903	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs147805823		P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			435	32	317	1	ENST00000262367.5:c.2312A>G	p.Gln771Arg	p.Q771R	ENST00000262367	NM_004380.2	771	cAg/cGg																																																																															
PIM1	5292	MSKCC	GRCh37	6	37138657	37138657	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	109	318	0	ENST00000373509.5:c.189+2T>C		p.X63_splice	ENST00000373509	NM_002648.3	63																																																																																
FAM58A	92002	MSKCC	GRCh37	X	152860048	152860048	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			315	131	298	0	ENST00000406277.2:c.380T>C	p.Leu127Pro	p.L127P	ENST00000406277	NM_152274.4	127	cTg/cCg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21351011	21351011	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs755260815		P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			425	39	308	0	ENST00000215739.8:c.2246A>G	p.Tyr749Cys	p.Y749C	ENST00000215739	NM_006767.3	749	tAc/tGc																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858110	152858110	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			301	181	327	0	ENST00000406277.2:c.505T>C	p.Trp169Arg	p.W169R	ENST00000406277	NM_152274.4	169	Tgg/Cgg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748155	72748155	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	46	228	0	ENST00000357731.5:c.23A>G	p.Gln8Arg	p.Q8R	ENST00000357731	NM_173808.2	8	cAg/cGg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862797	9862797	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1012398659		P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			448	51	367	0	ENST00000330684.3:c.2506A>C	p.Ile836Leu	p.I836L	ENST00000330684	NM_001134407.1	836	Atc/Ctc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77048446	77048446	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	30	268	0	ENST00000356341.3:c.1139T>C	p.Leu380Ser	p.L380S	ENST00000356341	NM_002576.4	380	tTg/tCg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873809	151873809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			477	182	336	0	ENST00000262189.6:c.8729G>A	p.Gly2910Asp	p.G2910D	ENST00000262189	NM_170606.2	2910	gGc/gAc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46543277	46543277	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			260	131	219	0	ENST00000262741.5:c.224T>C	p.Val75Ala	p.V75A	ENST00000262741	NM_003629.3	75	gTa/gCa																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814791	139814791	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			518	65	371	0	ENST00000247668.2:c.784A>G	p.Ser262Gly	p.S262G	ENST00000247668	NM_021138.3	262	Agc/Ggc																																																																															
ERG	2078	MSKCC	GRCh37	21	39763579	39763579	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			279	60	207	0	ENST00000288319.7:c.871+2T>C		p.X291_splice	ENST00000288319	NM_182918.3	291																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71941477	71941477	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			402	157	366	0	ENST00000298229.2:c.1162A>G	p.Thr388Ala	p.T388A	ENST00000298229	NM_001567.3	388	Act/Gct																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98240392	98240392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			327	173	303	1	ENST00000331920.6:c.1292T>C	p.Leu431Pro	p.L431P	ENST00000331920	NM_000264.3	431	cTg/cCg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999131	100999131	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			435	30	361	0	ENST00000325455.5:c.671A>C	p.Glu224Ala	p.E224A	ENST00000325455	NM_001202474.3	224	gAg/gCg																																																																															
BCL10	8915	MSKCC	GRCh37	1	85736436	85736436	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			419	42	307	0	ENST00000370580.1:c.211T>C	p.Tyr71His	p.Y71H	ENST00000370580	NM_003921.4	71	Tac/Cac																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245646	46245646	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			507	51	361	0	ENST00000334344.6:c.3740A>G	p.Glu1247Gly	p.E1247G	ENST00000334344	NM_152641.2	1247	gAg/gGg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812259	212812259	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	95	276	0	ENST00000342788.4:c.317G>C	p.Arg106Pro	p.R106P	ENST00000342788	NM_005235.2	106	cGt/cCt																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134855	41134855	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	46	322	0	ENST00000379561.5:c.773A>G	p.Asp258Gly	p.D258G	ENST00000379561	NM_002015.3	258	gAc/gGc																																																																															
GAB2	9846	MSKCC	GRCh37	11	77931391	77931391	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1448783711		P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			462	46	344	0	ENST00000361507.4:c.1861C>T	p.Pro621Ser	p.P621S	ENST00000361507	NM_080491.2	621	Ccg/Tcg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24143229	24143229	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			540	79	380	0	ENST00000263121.7:c.461A>T	p.Asn154Ile	p.N154I	ENST00000263121	NM_003073.3	154	aAc/aTc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40500506	40500506	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			275	126	221	0	ENST00000264657.5:c.29T>C	p.Leu10Pro	p.L10P	ENST00000264657	NM_139276.2	10	cTt/cCt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741487	17741487	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			361	47	295	0	ENST00000250003.3:c.158T>C	p.Val53Ala	p.V53A	ENST00000250003	NM_002478.4	53	gTg/gCg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020768	37020768	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	CC			P-0066791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			436	25	288	0	ENST00000358127.4:c.77delinsGG	p.Val26GlyfsTer49	p.V26Gfs*49	ENST00000358127	NM_001280556.1	26	gTt/gGGt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272501	15272501	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367885841		P-0067368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	36	465	0	ENST00000263388.2:c.5938G>A	p.Ala1980Thr	p.A1980T	ENST00000263388	NM_000435.2	1980	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578490	7578490	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	17	509	0	ENST00000269305.4:c.440T>A	p.Val147Asp	p.V147D	ENST00000269305	NM_001126112.2	147	gTt/gAt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278094	41278094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	64	444	0	ENST00000349496.5:c.1970C>A	p.Ala657Asp	p.A657D	ENST00000349496	NM_001904.3	657	gCt/gAt																																																																															
E2F3	1871	MSKCC	GRCh37	6	20490578	20490578	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368121892		P-0067368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	33	402	0	ENST00000346618.3:c.1315G>A	p.Gly439Arg	p.G439R	ENST00000346618	NM_001949.4	439	Ggg/Agg																																																																															
FYN	2534	MSKCC	GRCh37	6	112024217	112024217	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1370673690		P-0067368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	20	375	0	ENST00000368678.4:c.568C>T	p.Arg190Cys	p.R190C	ENST00000368678		190	Cgt/Tgt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	91	480	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	37	445	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	68	248	2	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	46	406	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14042196	14042196	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	95	412	0	ENST00000311895.7:c.2747del	p.Lys916SerfsTer4	p.K916Sfs*4	ENST00000311895	NM_005236.2	915	Aaa/aa																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	25	462	1	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121791	2121792	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	90	397	0	ENST00000219476.3:c.1959_1960del	p.Gly654LeufsTer2	p.G654Lfs*2	ENST00000219476	NM_000548.3	651	ccAGag/ccag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	78	398	0	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																															
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	35	272	0	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																																																															
MED12	9968	MSKCC	GRCh37	X	70357575	70357575	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	46	463	0	ENST00000374080.3:c.5827-1G>T		p.X1943_splice	ENST00000374080		1943																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	43	386	2	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	10	394	1	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742463	17742463	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	28	351	0	ENST00000250003.3:c.650del	p.Pro217ArgfsTer33	p.P217Rfs*33	ENST00000250003	NM_002478.4	215	ggC/gg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	21	132	1	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	32	393	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587780075		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	86	355	0	ENST00000269305.4:c.800G>A	p.Arg267Gln	p.R267Q	ENST00000269305	NM_001126112.2	267	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112173830	112173831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	82	421	0	ENST00000257430.4:c.2544dup	p.Asp849ArgfsTer2	p.D849Rfs*2	ENST00000257430	NM_000038.5	847	gaa/gAaa																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	78	436	0	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111921737	111921737	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1170116948		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	79	321	0	ENST00000393256.3:c.526G>A	p.Glu176Lys	p.E176K	ENST00000393256	NM_006538.4	176	Gaa/Aaa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	46	487	2	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602496	10602496	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750532889		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	133	421	0	ENST00000171111.5:c.1082C>T	p.Pro361Leu	p.P361L	ENST00000171111	NM_203500.1	361	cCg/cTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	109	341	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	38	437	0	ENST00000575354.2:c.3743del	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244223	5244223	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199851847		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	45	433	0	ENST00000357368.4:c.1259G>A	p.Arg420His	p.R420H	ENST00000357368	NM_002850.3	420	cGc/cAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542110	187542110	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	49	487	1	ENST00000441802.2:c.5630del	p.Pro1877LeufsTer20	p.P1877Lfs*20	ENST00000441802	NM_005245.3	1877	cCt/ct																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856617	111856617	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1364785726		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	49	321	0	ENST00000341259.2:c.668C>T	p.Ala223Val	p.A223V	ENST00000341259	NM_005475.2	223	gCg/gTg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936518	49936518	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867261592		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	57	516	0	ENST00000296474.3:c.1409G>A	p.Arg470His	p.R470H	ENST00000296474	NM_002447.2	470	cGt/cAt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47656969	47656969	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779075		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	100	312	0	ENST00000233146.2:c.1165C>T	p.Arg389Ter	p.R389*	ENST00000233146	NM_000251.2	389	Cga/Tga																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149516607	149516607	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148272095		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	112	362	1	ENST00000261799.4:c.4C>T	p.Arg2Trp	p.R2W	ENST00000261799	NM_002609.3	2	Cgg/Tgg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67646013	67646014	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-	rs1470210640		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	33	351	3	ENST00000264010.4:c.950_951del	p.Thr317ArgfsTer91	p.T317Rfs*91	ENST00000264010	NM_006565.3	314	aAC/a																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	45	493	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	90	371	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	55	475	0	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	41	410	1	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652397	48652397	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	40	439	0	ENST00000376670.3:c.1073del	p.Pro358GlnfsTer74	p.P358Qfs*74	ENST00000376670	NM_002049.3	356	ggC/gg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37089123	37089125	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs1485223012		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	97	341	0	ENST00000231790.2:c.1852_1854del	p.Lys618del	p.K618del	ENST00000231790	NM_000249.3	615	ctGAAg/ctg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717777	89717777	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs786204873		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	32	256	0	ENST00000371953.3:c.801+1G>A		p.X267_splice	ENST00000371953	NM_000314.4	267																																																																																
TEK	7010	MSKCC	GRCh37	9	27217701	27217701	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772600804		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	82	310	0	ENST00000380036.4:c.3007C>T	p.Arg1003Cys	p.R1003C	ENST00000380036	NM_000459.3	1003	Cgc/Tgc																																																																															
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	38	348	0	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989591	212989592	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	38	342	1	ENST00000342788.4:c.119_120del	p.Ser40Ter	p.S40*	ENST00000342788	NM_005235.2	40	tCT/t																																																																															
MTOR	2475	MSKCC	GRCh37	1	11293546	11293546	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	36	314	0	ENST00000361445.4:c.2332-2A>G		p.X778_splice	ENST00000361445	NM_004958.3	778																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36211898	36211899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775294431		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	36	428	0	ENST00000222270.7:c.1656dup	p.Lys553GlnfsTer46	p.K553Qfs*46	ENST00000222270	NM_014727.1	550	gac/gaCc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303200	15303200	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775836288		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	94	447	0	ENST00000263388.2:c.328C>T	p.Arg110Cys	p.R110C	ENST00000263388	NM_000435.2	110	Cgt/Tgt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155411	185155411	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140970208		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	56	372	0	ENST00000265026.3:c.652G>A	p.Ala218Thr	p.A218T	ENST00000265026	NM_004721.4	218	Gca/Aca																																																																															
EZH2	2146	MSKCC	GRCh37	7	148515136	148515136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	37	404	1	ENST00000320356.2:c.1073G>A	p.Arg358His	p.R358H	ENST00000320356	NM_004456.4	358	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445203	49445203	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	49	574	1	ENST00000301067.7:c.2263del	p.Arg755GlyfsTer175	p.R755Gfs*175	ENST00000301067	NM_003482.3	755	Cgg/gg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729609	41729609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	52	519	0	ENST00000242208.4:c.920G>A	p.Arg307Gln	p.R307Q	ENST00000242208	NM_002192.2	307	cGg/cAg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528284	157528284	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs749055122		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	48	487	0	ENST00000346085.5:c.6013del	p.Val2005TrpfsTer16	p.V2005Wfs*16	ENST00000346085	NM_020732.3	2003	aaG/aa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482363	56482363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	103	390	0	ENST00000267101.3:c.911C>T	p.Ala304Val	p.A304V	ENST00000267101	NM_001982.3	304	gCc/gTc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934426	39934426	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766556436		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	94	328	0	ENST00000378444.4:c.173C>T	p.Ala58Val	p.A58V	ENST00000378444	NM_001123385.1	58	gCg/gTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106162508	106162508	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	33	280	0	ENST00000380013.4:c.3426del	p.Asp1143MetfsTer9	p.D1143Mfs*9	ENST00000380013	NM_001127208.2	1141	gAa/ga																																																																															
SRC	6714	MSKCC	GRCh37	20	36012710	36012710	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1228673150		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	81	392	1	ENST00000358208.4:c.154G>A	p.Ala52Thr	p.A52T	ENST00000358208		52	Gcg/Acg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10246943	10246943	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749413587		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	103	429	0	ENST00000340748.4:c.4462G>A	p.Ala1488Thr	p.A1488T	ENST00000340748		1488	Gca/Aca																																																																															
LATS2	26524	MSKCC	GRCh37	13	21620140	21620140	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767021401		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	97	393	0	ENST00000382592.4:c.26C>T	p.Thr9Met	p.T9M	ENST00000382592	NM_014572.2	9	aCg/aTg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115276387	115276387	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779453730		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	111	350	0	ENST00000438362.2:c.941C>T	p.Thr314Ile	p.T314I	ENST00000438362	NM_001242891.1	314	aCc/aTc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135776208	135776208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	119	388	0	ENST00000298552.3:c.2519C>T	p.Ser840Leu	p.S840L	ENST00000298552	NM_001162426.1	840	tCg/tTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55955965	55955965	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754208569		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	42	358	0	ENST00000263923.4:c.3197G>A	p.Arg1066His	p.R1066H	ENST00000263923	NM_002253.2	1066	cGc/cAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391949	139391949	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	58	445	0	ENST00000277541.6:c.6242T>C	p.Leu2081Pro	p.L2081P	ENST00000277541	NM_017617.3	2081	cTg/cCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	52	332	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56490604	56490604	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373831196		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	94	409	0	ENST00000267101.3:c.2248C>T	p.Arg750Trp	p.R750W	ENST00000267101	NM_001982.3	750	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097624	11097625	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1165714406		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	47	421	0	ENST00000344626.4:c.810dup	p.Gly271ArgfsTer16	p.G271Rfs*16	ENST00000344626	NM_003072.3	268	-/C																																																																															
CTR9	9646	MSKCC	GRCh37	11	10796810	10796811	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	34	381	0	ENST00000361367.2:c.2949dup	p.Arg984ThrfsTer35	p.R984Tfs*35	ENST00000361367	NM_014633.3	981	cca/ccAa																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273925	18273925	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766254350		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	53	428	0	ENST00000222254.8:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000222254	NM_005027.3	420	Cgg/Tgg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564558	86564558	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	37	471	0	ENST00000274376.6:c.290G>C	p.Gly97Ala	p.G97A	ENST00000274376	NM_002890.2	97	gGt/gCt																																																																															
MGA	23269	MSKCC	GRCh37	15	42005395	42005395	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	59	441	0	ENST00000219905.7:c.3134del	p.Pro1045LeufsTer17	p.P1045Lfs*17	ENST00000219905	NM_001164273.1	1044	gCc/gc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104377163	104377163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1427876079		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	60	416	0	ENST00000369902.3:c.1274C>T	p.Ala425Val	p.A425V	ENST00000369902	NM_016169.3	425	gCg/gTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176631216	176631216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	139	453	0	ENST00000439151.2:c.1159G>A	p.Glu387Lys	p.E387K	ENST00000439151	NM_022455.4	387	Gaa/Aaa																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166455	118166456	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	95	463	0	ENST00000369448.3:c.969dup	p.His324AlafsTer2	p.H324Afs*2	ENST00000369448	NM_017709.3	322	atg/atGg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540997	187540997	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367776554		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	50	512	0	ENST00000441802.2:c.6743C>T	p.Pro2248Leu	p.P2248L	ENST00000441802	NM_005245.3	2248	cCg/cTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942192	71942192	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1006478277		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	100	430	0	ENST00000298229.2:c.1456C>T	p.Arg486Cys	p.R486C	ENST00000298229	NM_001567.3	486	Cgc/Tgc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52582126	52582126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	58	367	0	ENST00000394830.3:c.4702C>T	p.Arg1568Trp	p.R1568W	ENST00000394830	NM_018313.4	1568	Cgg/Tgg																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137528098	137528098	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	30	273	0	ENST00000367739.4:c.200+2T>C		p.X67_splice	ENST00000367739	NM_000416.2	67																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11170804	11170804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1306144699		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	83	392	0	ENST00000344626.4:c.4852C>T	p.Arg1618Ter	p.R1618*	ENST00000344626	NM_003072.3	1618	Cga/Tga																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324092	31324092	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs151341248		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	19	186	0	ENST00000412585.2:c.471G>A	p.Trp157Ter	p.W157*	ENST00000412585	NM_005514.6	157	tgG/tgA																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170754	11170754	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1484835507		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	35	401	0	ENST00000344626.4:c.4802G>A	p.Arg1601Gln	p.R1601Q	ENST00000344626	NM_003072.3	1601	cGg/cAg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864565	57864565	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs974867444		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	116	475	0	ENST00000228682.2:c.2042C>T	p.Pro681Leu	p.P681L	ENST00000228682	NM_005269.2	681	cCa/cTa																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430372	78430372	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	75	415	0	ENST00000370768.2:c.796A>G	p.Asn266Asp	p.N266D	ENST00000370768	NM_003902.3	266	Aat/Gat																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119666194	119666194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	46	300	0	ENST00000316626.5:c.287G>A	p.Arg96Gln	p.R96Q	ENST00000316626		96	cGa/cAa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685261	86685261	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751563679		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	49	345	0	ENST00000274376.6:c.2977C>T	p.Arg993Cys	p.R993C	ENST00000274376	NM_002890.2	993	Cgt/Tgt																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119582301	119582301	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759476802		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	51	412	0	ENST00000316626.5:c.1100G>A	p.Arg367Gln	p.R367Q	ENST00000316626		367	cGa/cAa																																																																															
SMO	6608	MSKCC	GRCh37	7	128848638	128848638	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1029412439		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	75	334	0	ENST00000249373.3:c.1303G>A	p.Gly435Arg	p.G435R	ENST00000249373	NM_005631.4	435	Ggg/Agg																																																																															
APC	324	MSKCC	GRCh37	5	112175430	112175430	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	69	394	0	ENST00000257430.4:c.4142del	p.Pro1381HisfsTer34	p.P1381Hfs*34	ENST00000257430	NM_000038.5	1380	aCc/ac																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245031	41245031	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	58	455	0	ENST00000357654.3:c.2517del	p.His839GlnfsTer7	p.H839Qfs*7	ENST00000357654	NM_007294.3	839	caC/ca																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435307	110435307	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1199525698		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	40	520	0	ENST00000375856.3:c.3094C>T	p.Pro1032Ser	p.P1032S	ENST00000375856	NM_003749.2	1032	Ccg/Tcg																																																																															
POLE	5426	MSKCC	GRCh37	12	133250212	133250212	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	56	423	0	ENST00000320574.5:c.1308del	p.Val437TrpfsTer3	p.V437Wfs*3	ENST00000320574	NM_006231.2	436	ccC/cc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112915785	112915785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	59	383	0	ENST00000351677.2:c.1058T>C	p.Ile353Thr	p.I353T	ENST00000351677	NM_002834.3	353	aTt/aCt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151868359	151868359	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1026459564		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	54	331	0	ENST00000262189.6:c.9443C>T	p.Ala3148Val	p.A3148V	ENST00000262189	NM_170606.2	3148	gCc/gTc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275228	41275228	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	60	408	0	ENST00000349496.5:c.1394T>C	p.Ile465Thr	p.I465T	ENST00000349496	NM_001904.3	465	aTc/aCc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231340	46231340	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	79	342	0	ENST00000334344.6:c.1180T>C	p.Tyr394His	p.Y394H	ENST00000334344	NM_152641.2	394	Tat/Cat																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941249	71941249	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769322084		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	68	562	0	ENST00000298229.2:c.1024C>T	p.Arg342Trp	p.R342W	ENST00000298229	NM_001567.3	342	Cgg/Tgg																																																																															
REL	5966	MSKCC	GRCh37	2	61144114	61144114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	55	320	0	ENST00000295025.8:c.497C>T	p.Ala166Val	p.A166V	ENST00000295025	NM_002908.2	166	gCt/gTt																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679638	33679638	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1322820152		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	47	449	0	ENST00000308377.4:c.2443A>G	p.Thr815Ala	p.T815A	ENST00000308377	NM_152270.3	815	Acc/Gcc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40858180	40858180	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747602257		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	59	334	0	ENST00000428826.2:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000428826		562	Cgc/Tgc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40447725	40447725	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756814024		P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	130	442	0	ENST00000345506.4:c.464C>T	p.Thr155Met	p.T155M	ENST00000345506	NM_003152.3	155	aCg/aTg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082866	16082866	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	25	230	0	ENST00000281043.3:c.683del	p.Pro228GlnfsTer33	p.P228Qfs*33	ENST00000281043	NM_005378.4	227	gCc/gc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	100	378	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	104	526	0	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	103	443	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	188	627	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	83	544	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	93	492	2	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	106	438	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152201874	152201874	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753014570		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	21	366	0	ENST00000206249.3:c.728G>A	p.Arg243His	p.R243H	ENST00000206249	NM_000125.3	243	cGt/cAt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	42	204	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	31	184	1	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	77	524	1	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	88	391	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138729528		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	134	537	0	ENST00000269305.4:c.523C>T	p.Arg175Cys	p.R175C	ENST00000269305	NM_001126112.2	175	Cgc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42032354	42032354	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201349807		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	96	457	0	ENST00000219905.7:c.4538G>A	p.Arg1513His	p.R1513H	ENST00000219905	NM_001164273.1	1513	cGc/cAc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370957	55370957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	79	398	0	ENST00000297316.4:c.259G>A	p.Ala87Thr	p.A87T	ENST00000297316	NM_022454.3	87	Gcg/Acg																																																																															
CDH1	999	MSKCC	GRCh37	16	68847275	68847277	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	103	415	0	ENST00000261769.5:c.1199_1201del	p.Asp400del	p.D400del	ENST00000261769	NM_004360.3	399	acTGAt/act																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246532	41246532	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs80357618		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	104	542	1	ENST00000357654.3:c.1016del	p.Lys339ArgfsTer2	p.K339Rfs*2	ENST00000357654	NM_007294.3	339	aAg/ag																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551951	150551952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs750805885		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	73	447	1	ENST00000369026.2:c.55dup	p.Ala19GlyfsTer91	p.A19Gfs*91	ENST00000369026	NM_021960.4	19	gcc/gGcc																																																																															
ATR	545	MSKCC	GRCh37	3	142277508	142277508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759350161		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	131	348	0	ENST00000350721.4:c.1843G>A	p.Ala615Thr	p.A615T	ENST00000350721	NM_001184.3	615	Gct/Act																																																																															
AXL	558	MSKCC	GRCh37	19	41743987	41743987	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1306116384		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	117	563	0	ENST00000301178.4:c.922C>T	p.Arg308Cys	p.R308C	ENST00000301178	NM_021913.4	308	Cgc/Tgc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294664	1294665	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1060502990		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	84	446	1	ENST00000310581.5:c.336dup	p.Glu113ArgfsTer79	p.E113Rfs*79	ENST00000310581	NM_198253.2	112	-/C																																																																															
ROS1	6098	MSKCC	GRCh37	6	117638326	117638326	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752085591		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	98	423	0	ENST00000368508.3:c.6115C>T	p.Arg2039Cys	p.R2039C	ENST00000368508	NM_002944.2	2039	Cgt/Tgt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224099	36224099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	64	361	0	ENST00000222270.7:c.6649C>T	p.Gln2217Ter	p.Q2217*	ENST00000222270	NM_014727.1	2217	Cag/Tag																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643536	38643536	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373477920		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	110	471	0	ENST00000299084.4:c.1006G>A	p.Val336Ile	p.V336I	ENST00000299084	NM_152594.2	336	Gta/Ata																																																																															
CARD11	84433	MSKCC	GRCh37	7	2958189	2958189	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1211022340		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	79	379	0	ENST00000396946.4:c.2543G>A	p.Arg848His	p.R848H	ENST00000396946	NM_032415.4	848	cGc/cAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411772	63411772	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	90	289	0	ENST00000330258.3:c.1395del	p.Asn466IlefsTer75	p.N466Ifs*75	ENST00000330258	NM_152424.3	465	ccC/cc																																																																															
ARAF	369	MSKCC	GRCh37	X	47429012	47429012	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754787460		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	112	248	0	ENST00000377045.4:c.1375G>A	p.Gly459Arg	p.G459R	ENST00000377045	NM_001654.4	459	Ggg/Agg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553506	106553506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	79	463	0	ENST00000369096.4:c.1471G>A	p.Ala491Thr	p.A491T	ENST00000369096	NM_001198.3	491	Gcg/Acg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104893810		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	120	492	0	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																																																															
NADK	65220	MSKCC	GRCh37	1	1688567	1688568	+	intron_variant	Intron	INS	-	-	C	rs746550458		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	88	437	3	ENST00000341426.5:c.393+52dup		p.*131*	ENST00000341426	NM_023018.4																																																																																	
ATXN7	6314	MSKCC	GRCh37	3	63981465	63981465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	109	556	0	ENST00000295900.6:c.1967C>A	p.Pro656His	p.P656H	ENST00000295900	NM_000333.3	656	cCc/cAc																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969983	161969983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	100	356	0	ENST00000366898.1:c.986del	p.Gly329AlafsTer106	p.G329Afs*106	ENST00000366898	NM_004562.2	329	gGc/gc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223789	53223789	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	94	266	0	ENST00000375401.3:c.3570T>G	p.Cys1190Trp	p.C1190W	ENST00000375401	NM_004187.3	1190	tgT/tgG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55227878	55227878	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	98	395	0	ENST00000275493.2:c.1345G>T	p.Gly449Ter	p.G449*	ENST00000275493	NM_005228.3	449	Gga/Tga																																																																															
ERG	2078	MSKCC	GRCh37	21	39817509	39817509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	86	465	0	ENST00000288319.7:c.54G>C	p.Leu18Phe	p.L18F	ENST00000288319	NM_182918.3	18	ttG/ttC																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36209235	36209236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCTGCGT			P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	76	563	0	ENST00000222270.7:c.317_324dup	p.Pro109AlafsTer61	p.P109Afs*61	ENST00000222270	NM_014727.1	105	-/GGCTGCGT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55214359	55214359	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	111	399	0	ENST00000275493.2:c.485T>C	p.Ile162Thr	p.I162T	ENST00000275493	NM_005228.3	162	aTc/aCc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991670	72991671	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	79	482	0	ENST00000268489.5:c.2374dup	p.Ala792GlyfsTer19	p.A792Gfs*19	ENST00000268489	NM_006885.3	792	gcc/gGcc																																																																															
MAX	4149	MSKCC	GRCh37	14	65544693	65544693	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	123	517	0	ENST00000358664.4:c.233del	p.Asn78ThrfsTer92	p.N78Tfs*92	ENST00000358664	NM_002382.4	78	aAc/ac																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70970954	70970954	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	95	449	0	ENST00000276594.2:c.1307T>C	p.Leu436Pro	p.L436P	ENST00000276594	NM_024504.3	436	cTc/cCc																																																																															
MSH3	4437	MSKCC	GRCh37	5	80074641	80074641	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	97	325	0	ENST00000265081.6:c.2421G>A	p.Trp807Ter	p.W807*	ENST00000265081	NM_002439.4	807	tgG/tgA																																																																															
USP8	9101	MSKCC	GRCh37	15	50773690	50773690	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	92	393	0	ENST00000307179.4:c.1236del	p.Lys412AsnfsTer12	p.K412Nfs*12	ENST00000307179		411	Aaa/aa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527652	157527652	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	93	442	0	ENST00000346085.5:c.5381del	p.Lys1794ArgfsTer57	p.K1794Rfs*57	ENST00000346085	NM_020732.3	1793	Aaa/aa																																																																															
CUL3	8452	MSKCC	GRCh37	2	225378284	225378286	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-	rs770645060		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	93	320	0	ENST00000264414.4:c.609_611del	p.Glu203del	p.E203del	ENST00000264414	NM_003590.4	203	gaAGAt/gat																																																																															
MGA	23269	MSKCC	GRCh37	15	42053984	42053984	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	84	412	0	ENST00000219905.7:c.7446A>G	p.Ile2482Met	p.I2482M	ENST00000219905	NM_001164273.1	2482	atA/atG																																																																															
SESN3	143686	MSKCC	GRCh37	11	94917695	94917695	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	86	426	0	ENST00000536441.1:c.826A>G	p.Arg276Gly	p.R276G	ENST00000536441	NM_144665.3	276	Agg/Ggg																																																																															
CIC	23152	MSKCC	GRCh37	19	42799259	42799259	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1472447044		P-0067405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	69	374	0	ENST00000575354.2:c.4746del	p.Pro1583LeufsTer37	p.P1583Lfs*37	ENST00000575354	NM_015125.3	1581	tcG/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0067409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	16	300	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0067409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	23	480	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	73	536	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173374	112173374	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	23	471	0	ENST00000257430.4:c.2083C>T	p.Gln695Ter	p.Q695*	ENST00000257430	NM_000038.5	695	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0067409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	21	404	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16024505	16024505	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	51	401	0	ENST00000268712.3:c.1713del	p.Arg572GlufsTer18	p.R572Efs*18	ENST00000268712	NM_006311.3	571	ggG/gg																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	18	143	1	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	113	548	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15308383	15308383	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	45	443	3	ENST00000263388.2:c.125del	p.Pro42LeufsTer194	p.P42Lfs*194	ENST00000263388	NM_000435.2	42	cCt/ct																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	56	423	11	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376626	8376626	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772303653		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	32	326	0	ENST00000356435.5:c.4487G>A	p.Arg1496Gln	p.R1496Q	ENST00000356435		1496	cGa/cAa																																																																															
CDK8	1024	MSKCC	GRCh37	13	26967566	26967566	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs369889152		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	43	365	0	ENST00000381527.3:c.709C>T	p.Arg237Ter	p.R237*	ENST00000381527	NM_001260.1	237	Cga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	28	436	5	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2223376	2223376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	46	467	0	ENST00000398665.3:c.3492del	p.Val1165CysfsTer8	p.V1165Cfs*8	ENST00000398665	NM_032482.2	1163	Ccc/cc																																																																															
ERG	2078	MSKCC	GRCh37	21	39764347	39764347	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	34	371	0	ENST00000288319.7:c.765del	p.Arg256GlyfsTer35	p.R256Gfs*35	ENST00000288319	NM_182918.3	255	ccC/cc																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	51	351	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	38	414	1	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	49	373	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288710	15288710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	27	322	0	ENST00000263388.2:c.4029del	p.Cys1344ValfsTer76	p.C1344Vfs*76	ENST00000263388	NM_000435.2	1343	ccC/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	29	416	0	ENST00000331920.6:c.3921del	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781417	3781417	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776549587		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	30	386	0	ENST00000262367.5:c.4948G>A	p.Val1650Ile	p.V1650I	ENST00000262367	NM_004380.2	1650	Gtc/Atc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	43	341	0	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	55	357	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	55	509	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31025023	31025023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	53	411	0	ENST00000375687.4:c.4508C>T	p.Ser1503Leu	p.S1503L	ENST00000375687	NM_015338.5	1503	tCg/tTg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729604	41729604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	30	444	0	ENST00000242208.4:c.925C>T	p.Arg309Trp	p.R309W	ENST00000242208	NM_002192.2	309	Cgg/Tgg																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	62	440	6	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39629562	39629562	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	20	306	0	ENST00000262039.4:c.2260del	p.Thr754GlnfsTer7	p.T754Qfs*7	ENST00000262039	NM_002647.2	752	acA/ac																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	38	397	2	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348566	89348568	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-	rs753054998		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	62	471	1	ENST00000301030.4:c.4382_4384del	p.Lys1461del	p.K1461del	ENST00000301030	NM_001256183.1	1461	aAGAga/aga																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626680	12626680	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751232720		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	93	468	1	ENST00000251849.4:c.1609G>A	p.Val537Ile	p.V537I	ENST00000251849	NM_002880.3	537	Gta/Ata																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372388	55372388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1437921769		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	28	466	0	ENST00000297316.4:c.1078C>T	p.Arg360Cys	p.R360C	ENST00000297316	NM_022454.3	360	Cgc/Tgc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520087	106520087	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774448553		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	38	315	1	ENST00000359195.3:c.2515C>T	p.Arg839Cys	p.R839C	ENST00000359195	NM_002649.2	839	Cgc/Tgc																																																																															
TET1	80312	MSKCC	GRCh37	10	70450582	70450582	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150708897		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	42	375	2	ENST00000373644.4:c.5422G>A	p.Val1808Met	p.V1808M	ENST00000373644	NM_030625.2	1808	Gtg/Atg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67646013	67646014	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-	rs1470210640		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	38	366	3	ENST00000264010.4:c.950_951del	p.Thr317ArgfsTer91	p.T317Rfs*91	ENST00000264010	NM_006565.3	314	aAC/a																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022499	12022499	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200351280		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	57	488	0	ENST00000396373.4:c.605G>A	p.Arg202Gln	p.R202Q	ENST00000396373	NM_001987.4	202	cGg/cAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991949	72991949	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs757302188		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	41	393	0	ENST00000268489.5:c.2096del	p.Gly699AlafsTer125	p.G699Afs*125	ENST00000268489	NM_006885.3	699	gGc/gc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222498	53222498	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782272528		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	51	206	0	ENST00000375401.3:c.4334G>A	p.Arg1445His	p.R1445H	ENST00000375401	NM_004187.3	1445	cGt/cAt																																																																															
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	59	376	1	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	30	417	0	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883212	37883212	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs566053951		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	54	385	0	ENST00000269571.5:c.3115G>A	p.Ala1039Thr	p.A1039T	ENST00000269571		1039	Gct/Act																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670255	134670255	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1426484610		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	39	380	0	ENST00000398015.3:c.166C>T	p.Arg56Cys	p.R56C	ENST00000398015	NM_004441.4	56	Cgc/Tgc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	44	422	0	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
SMYD3	64754	MSKCC	GRCh37	1	245927443	245927443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	43	341	0	ENST00000388985.4:c.1085del	p.Phe362SerfsTer12	p.F362Sfs*12	ENST00000388985		362	tTc/tc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	49	429	2	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66779571	66779571	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773890369		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	50	346	1	ENST00000307102.5:c.901G>A	p.Gly301Arg	p.G301R	ENST00000307102	NM_002755.3	301	Gga/Aga																																																																															
PMS1	5378	MSKCC	GRCh37	2	190660640	190660640	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778185859		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	54	383	0	ENST00000441310.2:c.278G>A	p.Arg93His	p.R93H	ENST00000441310	NM_000534.4	93	cGt/cAt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11227537	11227537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	35	287	0	ENST00000361445.4:c.4291G>A	p.Gly1431Arg	p.G1431R	ENST00000361445	NM_004958.3	1431	Gga/Aga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522740	67522741	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	53	353	0	ENST00000274335.5:c.244dup	p.Ile82AsnfsTer24	p.I82Nfs*24	ENST00000274335		79	-/A																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395084	139395084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764798860		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	41	419	0	ENST00000277541.6:c.5854G>A	p.Ala1952Thr	p.A1952T	ENST00000277541	NM_017617.3	1952	Gca/Aca																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807542	1807542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	47	426	0	ENST00000260795.2:c.1711C>T	p.Arg571Trp	p.R571W	ENST00000260795		571	Cgg/Tgg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391407	139391407	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780071276		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	39	445	1	ENST00000277541.6:c.6784G>A	p.Gly2262Ser	p.G2262S	ENST00000277541	NM_017617.3	2262	Ggc/Agc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98242701	98242701	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs547776340		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	63	402	0	ENST00000331920.6:c.916G>A	p.Ala306Thr	p.A306T	ENST00000331920	NM_000264.3	306	Gcc/Acc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151880172	151880172	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	50	334	0	ENST00000262189.6:c.5152del	p.Arg1718GlyfsTer23	p.R1718Gfs*23	ENST00000262189	NM_170606.2	1718	Agg/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	49	267	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986694	36986694	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1228608392		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	13	342	0	ENST00000354822.5:c.995C>T	p.Ala332Val	p.A332V	ENST00000354822	NM_001079668.2	332	gCg/gTg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78899182	78899182	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200660726		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	77	337	2	ENST00000306801.3:c.2821G>A	p.Ala941Thr	p.A941T	ENST00000306801	NM_020761.2	941	Gcg/Acg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204984	128204984	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369637181		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	48	480	0	ENST00000341105.2:c.457G>A	p.Gly153Arg	p.G153R	ENST00000341105	NM_032638.4	153	Ggg/Agg																																																																															
SYK	6850	MSKCC	GRCh37	9	93636565	93636565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	55	327	0	ENST00000375746.1:c.995C>T	p.Ala332Val	p.A332V	ENST00000375746	NM_001174167.1	332	gCa/gTa																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61305069	61305069	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764188105		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	60	504	0	ENST00000341074.5:c.1057G>A	p.Glu353Lys	p.E353K	ENST00000341074	NM_002974.2	353	Gaa/Aaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202969	16202969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146447271		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	69	409	0	ENST00000375759.3:c.677G>A	p.Arg226Gln	p.R226Q	ENST00000375759	NM_015001.2	226	cGg/cAg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174428	11174428	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1173643064		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	48	337	0	ENST00000361445.4:c.7247C>T	p.Ala2416Val	p.A2416V	ENST00000361445	NM_004958.3	2416	gCc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919249	178919249	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	20	347	0	ENST00000263967.3:c.734A>G	p.Glu245Gly	p.E245G	ENST00000263967	NM_006218.2	245	gAa/gGa																																																																															
AXL	558	MSKCC	GRCh37	19	41759584	41759584	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	40	371	0	ENST00000301178.4:c.2007A>G	p.Ile669Met	p.I669M	ENST00000301178	NM_021913.4	669	atA/atG																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686315	30686316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	42	405	0	ENST00000359013.4:c.250dup	p.Ser84PhefsTer4	p.S84Ffs*4	ENST00000359013	NM_001024847.2	82	-/T																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513236	106513236	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773788683		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	60	404	0	ENST00000359195.3:c.2140G>A	p.Ala714Thr	p.A714T	ENST00000359195	NM_002649.2	714	Gct/Act																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095658	178095658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	53	423	0	ENST00000397062.3:c.1673G>A	p.Ser558Asn	p.S558N	ENST00000397062	NM_006164.4	558	aGc/aAc																																																																															
RET	5979	MSKCC	GRCh37	10	43607649	43607649	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	72	644	0	ENST00000355710.3:c.1625A>T	p.Glu542Val	p.E542V	ENST00000355710	NM_020975.4	542	gAg/gTg																																																																															
RAD51	5888	MSKCC	GRCh37	15	40993264	40993265	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	60	320	0	ENST00000267868.3:c.93_94del	p.Cys31TrpfsTer33	p.C31Wfs*33	ENST00000267868	NM_002875.4	30	caGTgt/cagt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47635690	47635691	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	79	301	0	ENST00000233146.2:c.363dup	p.Lys122Ter	p.K122*	ENST00000233146	NM_000251.2	121	tat/taTt																																																																															
GNB1	2782	MSKCC	GRCh37	1	1735977	1735977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	61	397	0	ENST00000378609.4:c.311C>T	p.Ala104Val	p.A104V	ENST00000378609	NM_002074.3	104	gCa/gTa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032018	26032018	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	65	535	0	ENST00000244661.2:c.271A>T	p.Met91Leu	p.M91L	ENST00000244661	NM_003537.3	91	Atg/Ttg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193104672	193104672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	100	421	0	ENST00000367435.3:c.376C>T	p.Arg126Ter	p.R126*	ENST00000367435	NM_024529.4	126	Cga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259176	89259176	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1365430715		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	36	391	0	ENST00000336596.2:c.320A>G	p.Asn107Ser	p.N107S	ENST00000336596	NM_005233.5	107	aAt/aGt																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7980362	7980362	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	45	411	0	ENST00000319144.4:c.1221G>T	p.Glu407Asp	p.E407D	ENST00000319144	NM_001139.2	407	gaG/gaT																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99172203	99172203	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746024488		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	68	499	0	ENST00000074304.5:c.1769G>A	p.Cys590Tyr	p.C590Y	ENST00000074304	NM_001134224.1	590	tGt/tAt																																																																															
USP8	9101	MSKCC	GRCh37	15	50751219	50751219	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	65	392	0	ENST00000307179.4:c.363del	p.Lys121AsnfsTer71	p.K121Nfs*71	ENST00000307179		120	Aaa/aa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100184	30100184	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	43	336	0	ENST00000331968.5:c.1436C>A	p.Thr479Asn	p.T479N	ENST00000331968	NM_002742.2	479	aCt/aAt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202711	128202711	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs387906632		P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	42	420	0	ENST00000341105.2:c.1009C>T	p.Arg337Ter	p.R337*	ENST00000341105	NM_032638.4	337	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223956	36223956	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	46	458	1	ENST00000222270.7:c.6509del	p.Pro2170GlnfsTer6	p.P2170Qfs*6	ENST00000222270	NM_014727.1	2169	gCc/gc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295970	1295970	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0067411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	39	495	0				ENST00000310581	NM_198253.2																																																																																	
SMAD2	4087	MSKCC	GRCh37	18	45368252	45368252	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	26	499	0	ENST00000262160.6:c.1350C>G	p.Asp450Glu	p.D450E	ENST00000262160	NM_005901.5	450	gaC/gaG																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374882	45374882	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs776149698		P-0067435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	46	484	0	ENST00000262160.6:c.961C>T	p.Arg321Ter	p.R321*	ENST00000262160	NM_005901.5	321	Cga/Tga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554453	63554453	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	119	723	0	ENST00000307078.5:c.286C>T	p.Arg96Ter	p.R96*	ENST00000307078	NM_004655.3	96	Cga/Tga																																																																															
SMO	6608	MSKCC	GRCh37	7	128843302	128843302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	34	574	0	ENST00000249373.3:c.409G>T	p.Asp137Tyr	p.D137Y	ENST00000249373	NM_005631.4	137	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398286	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0067435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	46	362	0	ENST00000256078.4:c.33_34delinsCT	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	11	gcTGgt/gcCTgt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482778	67482778	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0067435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	77	513	0	ENST00000327367.4:c.1182C>A	p.Cys394Ter	p.C394*	ENST00000327367	NM_005902.3	394	tgC/tgA																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448303	56448304	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0067435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	104	607	0	ENST00000407977.2:c.342_343dup	p.Ala115GlyfsTer44	p.A115Gfs*44	ENST00000407977		115	gcc/gGGcc																																																																															
ATR	545	MSKCC	GRCh37	3	142218469	142218469	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0067435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	22	299	0	ENST00000350721.4:c.5380G>A	p.Asp1794Asn	p.D1794N	ENST00000350721	NM_001184.3	1794	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0067446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	45	482	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	39	448	0	ENST00000361445.4:c.5930C>T	p.Thr1977Ile	p.T1977I	ENST00000361445	NM_004958.3	1977	aCa/aTa																																																																															
APC	324	MSKCC	GRCh37	5	112173785	112173785	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	14	435	0	ENST00000257430.4:c.2496del	p.Ser833AlafsTer9	p.S833Afs*9	ENST00000257430	NM_000038.5	832	Ccc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0067446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	24	314	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28631489	28631489	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	11	261	0	ENST00000241453.7:c.479T>G	p.Ile160Arg	p.I160R	ENST00000241453	NM_004119.2	160	aTa/aGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0067450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	12	428	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0067495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	304	636	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0067495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	252	709	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852217		P-0067495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			94	332	292	0	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0067495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	178	347	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112154979	112154980	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGAA			P-0067495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	89	523	0	ENST00000257430.4:c.1251_1254dup	p.Thr419Ter	p.T419*	ENST00000257430	NM_000038.5	417	tgt/tgTGAAt																																																																															
MDM2	4193	MSKCC	GRCh37	12	69222597	69222597	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	92	466	0	ENST00000462284.1:c.570C>A	p.His190Gln	p.H190Q	ENST00000462284	NM_002392.5	190	caC/caA																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145669	11145669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	134	595	0	ENST00000344626.4:c.4031C>T	p.Pro1344Leu	p.P1344L	ENST00000344626	NM_003072.3	1344	cCc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	81	473	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0067530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	223	542	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274899	41274899	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	76	450	0	ENST00000349496.5:c.1149G>T	p.Trp383Cys	p.W383C	ENST00000349496	NM_001904.3	383	tgG/tgT																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686382	30686382	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	69	567	0	ENST00000359013.4:c.313C>G	p.Pro105Ala	p.P105A	ENST00000359013	NM_001024847.2	105	Cca/Gca																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230461114	230461114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779820889		P-0067530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	37	430	1	ENST00000525115.1:c.1114G>A	p.Val372Met	p.V372M	ENST00000525115		372	Gtg/Atg																																																																															
RB1	5925	MSKCC	GRCh37	13	49039417	49039417	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	20	458	0	ENST00000267163.4:c.2402G>C	p.Gly801Ala	p.G801A	ENST00000267163	NM_000321.2	801	gGa/gCa																																																																															
ALK	238	MSKCC	GRCh37	2	29754793	29754793	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	56	519	0	ENST00000389048.3:c.1142C>G	p.Pro381Arg	p.P381R	ENST00000389048	NM_004304.4	381	cCa/cGa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821832	72821832	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	44	558	0	ENST00000268489.5:c.10343G>C	p.Ser3448Thr	p.S3448T	ENST00000268489	NM_006885.3	3448	aGt/aCt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575157	48575158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0067530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			60	29	324	0	ENST00000342988.3:c.353_354dup	p.Phe119ArgfsTer4	p.F119Rfs*4	ENST00000342988	NM_005359.5	117	-/GC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0067609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	174	533	1	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911593	114911593	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0067609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	154	509	0	ENST00000543371.1:c.1111G>T	p.Glu371Ter	p.E371*	ENST00000543371	NM_001198531.1	371	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0067609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	108	380	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61322931	61322931	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	58	319	0	ENST00000283752.5:c.1133C>A	p.Thr378Asn	p.T378N	ENST00000283752	NM_006919.2	378	aCc/aAc																																																																															
APC	324	MSKCC	GRCh37	5	112175248	112175255	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGAGCG	TGTGAGCG	-			P-0067609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	218	523	1	ENST00000257430.4:c.3957_3964del	p.Val1320SerfsTer9	p.V1320Sfs*9	ENST00000257430	NM_000038.5	1319	ccTGTGAGCGaa/ccaa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589168	67589168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	67	328	0	ENST00000274335.5:c.1156C>T	p.Arg386Ter	p.R386*	ENST00000274335		386	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0067620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	252	452	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509127	66509127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145126637		P-0067620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	27	262	2	ENST00000273854.3:c.200G>A	p.Arg67His	p.R67H	ENST00000273854	NM_004439.5	67	cGc/cAc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727443	66727457	+	inframe_deletion	In_Frame_Del	DEL	TCTTACCCAGAAGCA	TCTTACCCAGAAGCA	-			P-0067620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	123	366	0	ENST00000307102.5:c.159_173del	p.Phe53_Gln58delinsLeu	p.F53_Q58delinsL	ENST00000307102	NM_002755.3	53	ttTCTTACCCAGAAGCAg/ttg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610169	10610169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	194	431	0	ENST00000171111.5:c.541C>T	p.Pro181Ser	p.P181S	ENST00000171111	NM_203500.1	181	Ccc/Tcc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726631	46726631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	94	424	1	ENST00000371975.4:c.710G>A	p.Arg237Lys	p.R237K	ENST00000371975	NM_003579.3	237	aGg/aAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0067622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	115	482	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0067622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			94	54	295	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0067628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	88	409	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162741879	162741879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	69	429	0	ENST00000367921.3:c.1570G>A	p.Ala524Thr	p.A524T	ENST00000367921	NM_006182.2	524	Gct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0067628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	25	291	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MSI1	4440	MSKCC	GRCh37	12	120784049	120784049	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	40	468	0	ENST00000257552.2:c.936C>A	p.Ser312Arg	p.S312R	ENST00000257552	NM_002442.3	312	agC/agA																																																																															
DDR2	4921	MSKCC	GRCh37	1	162741934	162741934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	35	424	0	ENST00000367921.3:c.1625C>A	p.Ala542Asp	p.A542D	ENST00000367921	NM_006182.2	542	gCc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0067631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	25	502	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0067631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	39	479	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0067631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	12	305	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0067638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	243	395	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	63	387	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0067638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	281	546	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																															
APC	324	MSKCC	GRCh37	5	112116538	112116538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs749479682		P-0067638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	91	349	0	ENST00000257430.4:c.583C>T	p.Gln195Ter	p.Q195*	ENST00000257430	NM_000038.5	195	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0067638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	110	284	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29576013	29576013	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0067638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			66	214	369	0	ENST00000358273.4:c.3986C>G	p.Ser1329Ter	p.S1329*	ENST00000358273	NM_001042492.2	1329	tCa/tGa																																																																															
KLF5	688	MSKCC	GRCh37	13	73636645	73636647	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0067638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	447	522	0	ENST00000377687.4:c.913_915del	p.Pro305del	p.P305del	ENST00000377687	NM_001730.3	303	tCACca/tca																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610423	10610423	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	149	483	0	ENST00000171111.5:c.287A>G	p.His96Arg	p.H96R	ENST00000171111	NM_203500.1	96	cAc/cGc																																																																															
STK11	6794	MSKCC	GRCh37	19	1222001	1222001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	108	354	0	ENST00000326873.7:c.916C>T	p.His306Tyr	p.H306Y	ENST00000326873	NM_000455.4	306	Cac/Tac																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637496	47637496	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	42	349	1	ENST00000233146.2:c.630G>T	p.Met210Ile	p.M210I	ENST00000233146	NM_000251.2	210	atG/atT																																																																															
NF1	4763	MSKCC	GRCh37	17	29683506	29683506	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	116	338	0	ENST00000358273.4:c.7644A>G	p.Ile2548Met	p.I2548M	ENST00000358273	NM_001042492.2	2548	atA/atG																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701195	43701195	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	24	434	0	ENST00000382044.4:c.5500G>T	p.Val1834Phe	p.V1834F	ENST00000382044	NM_001141980.1	1834	Gtc/Ttc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211749	2211749	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0067641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	137	381	0	ENST00000398665.3:c.1466-1G>C		p.X489_splice	ENST00000398665	NM_032482.2	489																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	47	395	0	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468193	120468193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	38	355	0	ENST00000256646.2:c.4246G>A	p.Ala1416Thr	p.A1416T	ENST00000256646	NM_024408.3	1416	Gca/Aca																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849047	156849047	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142870382		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	30	306	0	ENST00000524377.1:c.1939G>A	p.Val647Met	p.V647M	ENST00000524377	NM_002529.3	647	Gtg/Atg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100286	8100286	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1241255776		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	38	335	0	ENST00000346208.3:c.260C>T	p.Pro87Leu	p.P87L	ENST00000346208		87	cCg/cTg																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518070	69518070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	23	252	0	ENST00000294312.3:c.295C>T	p.Arg99Trp	p.R99W	ENST00000294312	NM_005117.2	99	Cgg/Tgg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944716	71944716	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750542712		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	36	322	0	ENST00000298229.2:c.2140G>A	p.Val714Ile	p.V714I	ENST00000298229	NM_001567.3	714	Gtc/Atc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118345013	118345013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	63	258	0	ENST00000534358.1:c.3139G>A	p.Asp1047Asn	p.D1047N	ENST00000534358	NM_005933.3	1047	Gac/Aac																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	35	250	2	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112893802	112893802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	26	248	0	ENST00000351677.2:c.691C>T	p.Arg231Ter	p.R231*	ENST00000351677	NM_002834.3	231	Cga/Tga																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562463	21562463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	20	268	0	ENST00000382592.4:c.1456G>A	p.Ala486Thr	p.A486T	ENST00000382592	NM_014572.2	486	Gcc/Acc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514839	103514839	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs577826260		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	73	357	0	ENST00000355739.4:c.1340C>T	p.Ala447Val	p.A447V	ENST00000355739	NM_000123.3	447	gCg/gTg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2220615	2220615	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-	rs774508592		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	65	282	0	ENST00000326181.6:c.237del	p.Ile80SerfsTer48	p.I80Sfs*48	ENST00000326181	NM_032271.2	78	Ccc/cc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3642778	3642778	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145353518		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	55	286	0	ENST00000294008.3:c.2249C>T	p.Thr750Met	p.T750M	ENST00000294008	NM_032444.2	750	aCg/aTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789591	3789591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	45	270	0	ENST00000262367.5:c.4268del	p.Pro1423LeufsTer36	p.P1423Lfs*36	ENST00000262367	NM_004380.2	1423	cCt/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577111	7577111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	77	310	0	ENST00000269305.4:c.827C>T	p.Ala276Val	p.A276V	ENST00000269305	NM_001126112.2	276	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs757274881		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	64	361	1	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032472	12032472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	52	213	0	ENST00000353533.5:c.908G>A	p.Gly303Asp	p.G303D	ENST00000353533	NM_003010.3	303	gGc/gAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	90	347	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	67	371	0	ENST00000407977.2:c.349del	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492776	56492776	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	73	303	0	ENST00000407977.2:c.163del	p.Met55TrpfsTer7	p.M55Wfs*7	ENST00000407977		55	Atg/tg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119780	70119781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	38	304	0	ENST00000245479.2:c.788dup	p.Arg264GlnfsTer32	p.R264Qfs*32	ENST00000245479	NM_000346.3	261	gag/gaGg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272237	15272237	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs189252435		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	23	310	0	ENST00000263388.2:c.6202G>A	p.Gly2068Arg	p.G2068R	ENST00000263388	NM_000435.2	2068	Ggg/Agg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278100	18278100	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	77	298	0	ENST00000222254.8:c.1720C>T	p.Arg574Ter	p.R574*	ENST00000222254	NM_005027.3	574	Cga/Tga																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19258520	19258520	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376625415		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	34	328	0	ENST00000162023.5:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000162023		127	cGa/cAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211898	36211899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775294431		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	75	308	0	ENST00000222270.7:c.1656dup	p.Lys553GlnfsTer46	p.K553Qfs*46	ENST00000222270	NM_014727.1	550	gac/gaCc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	29	400	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
CIC	23152	MSKCC	GRCh37	19	42797955	42797955	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140554618		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	77	360	0	ENST00000575354.2:c.4007C>T	p.Pro1336Leu	p.P1336L	ENST00000575354	NM_015125.3	1336	cCg/cTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	17	123	2	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868196	45868196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	50	338	0	ENST00000391945.4:c.494G>T	p.Gly165Val	p.G165V	ENST00000391945	NM_000400.3	165	gGg/gTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25991713	25991713	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs190136878		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	62	236	0	ENST00000435504.4:c.529A>C	p.Lys177Gln	p.K177Q	ENST00000435504		177	Aag/Cag																																																																															
SOS1	6654	MSKCC	GRCh37	2	39239433	39239433	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	39	246	0	ENST00000402219.2:c.2224del	p.Ile742LeufsTer24	p.I742Lfs*24	ENST00000402219	NM_005633.3	742	Att/tt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47639588	47639588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	57	233	0	ENST00000233146.2:c.687del	p.Ala230LeufsTer16	p.A230Lfs*16	ENST00000233146	NM_000251.2	227	agA/ag																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264413	46264413	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375958201		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	49	329	0	ENST00000371998.3:c.1460G>A	p.Arg487His	p.R487H	ENST00000371998		487	cGt/cAt																																																																															
ERG	2078	MSKCC	GRCh37	21	39817412	39817412	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200306085		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	52	346	0	ENST00000288319.7:c.151G>A	p.Val51Ile	p.V51I	ENST00000288319	NM_182918.3	51	Gtc/Atc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665096	138665096	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs758370933		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	27	213	0	ENST00000330315.3:c.469C>G	p.Pro157Ala	p.P157A	ENST00000330315	NM_023067.3	157	Ccc/Gcc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129987	55129987	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1207595829		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	33	330	2	ENST00000257290.5:c.521G>A	p.Ser174Asn	p.S174N	ENST00000257290	NM_006206.4	174	aGc/aAc																																																																															
KDR	3791	MSKCC	GRCh37	4	55956194	55956194	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs922679946		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	22	266	0	ENST00000263923.4:c.3121G>A	p.Val1041Met	p.V1041M	ENST00000263923	NM_002253.2	1041	Gtg/Atg																																																																															
KDR	3791	MSKCC	GRCh37	4	55961827	55961827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	19	221	0	ENST00000263923.4:c.2734C>T	p.Leu912Phe	p.L912F	ENST00000263923	NM_002253.2	912	Ctc/Ttc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645142	86645143	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	49	297	0	ENST00000274376.6:c.1217dup	p.Asn406LysfsTer12	p.N406Kfs*12	ENST00000274376	NM_002890.2	405	cca/ccAa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047888	180047888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	28	385	0	ENST00000261937.6:c.2287G>A	p.Val763Met	p.V763M	ENST00000261937	NM_182925.4	763	Gtg/Atg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129329	152129329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	25	282	0	ENST00000206249.3:c.287del	p.Gly96ValfsTer13	p.G96Vfs*13	ENST00000206249	NM_000125.3	94	ctG/ct																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522454	157522454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	44	360	0	ENST00000346085.5:c.4726C>T	p.Pro1576Ser	p.P1576S	ENST00000346085	NM_020732.3	1576	Ccg/Tcg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	51	244	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
HGF	3082	MSKCC	GRCh37	7	81346608	81346608	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1450812000		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	27	284	0	ENST00000222390.5:c.1345G>A	p.Gly449Arg	p.G449R	ENST00000222390	NM_000601.4	449	Gga/Aga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	103	271	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	61	299	0	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956772	68956772	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199819614		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	55	225	0	ENST00000288368.4:c.890G>A	p.Arg297His	p.R297H	ENST00000288368	NM_024870.2	297	cGt/cAt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737820	145737820	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs36023964		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	63	321	0	ENST00000428558.2:c.3010C>T	p.Arg1004Trp	p.R1004W	ENST00000428558	NM_004260.3	1004	Cgg/Tgg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8524967	8524967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	22	215	2	ENST00000356435.5:c.637G>A	p.Ala213Thr	p.A213T	ENST00000356435		213	Gcg/Acg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528710	8528710	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768826930		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	37	328	0	ENST00000356435.5:c.422G>A	p.Arg141His	p.R141H	ENST00000356435		141	cGc/cAc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882049	36882050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs780753361		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	29	285	1	ENST00000358127.4:c.963dup	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	-/C																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570332	87570332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	42	357	0	ENST00000277120.3:c.2072G>A	p.Arg691His	p.R691H	ENST00000277120		691	cGc/cAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209627	98209627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	32	323	0	ENST00000331920.6:c.3911G>T	p.Arg1304Met	p.R1304M	ENST00000331920	NM_000264.3	1304	aGg/aTg																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15821896	15821896	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	56	294	0	ENST00000307771.7:c.294del	p.Lys98AsnfsTer10	p.K98Nfs*10	ENST00000307771	NM_005089.3	97	Aaa/aa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044919	47044919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	48	372	1	ENST00000329236.7:c.2011C>T	p.Arg671Trp	p.R671W	ENST00000329236	NM_001204466.1	671	Cgg/Tgg																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551857	150551858	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	39	295	0	ENST00000369026.2:c.149dup	p.Gly51ArgfsTer59	p.G51Rfs*59	ENST00000369026	NM_021960.4	50	gga/ggGa																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206652424	206652424	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	54	317	0	ENST00000367120.3:c.1135del	p.Leu379Ter	p.L379*	ENST00000367120	NM_014002.3	377	agC/ag																																																																															
WT1	7490	MSKCC	GRCh37	11	32456796	32456797	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	20	292	0	ENST00000332351.3:c.95dup	p.Val33SerfsTer19	p.V33Sfs*19	ENST00000332351	NM_024426.4	32	gga/ggGa																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594732	47594732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	68	360	0	ENST00000395288.2:c.1307C>T	p.Ala436Val	p.A436V	ENST00000395288	NM_016506.5	436	gCt/gTt																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518411	69518411	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	13	152	0	ENST00000294312.3:c.232+2T>G		p.X78_splice	ENST00000294312	NM_005117.2	78																																																																																
PGR	5241	MSKCC	GRCh37	11	100998988	100998988	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	49	303	0	ENST00000325455.5:c.814G>C	p.Asp272His	p.D272H	ENST00000325455	NM_001202474.3	272	Gat/Cat																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376802	118376802	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782013311		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	51	357	0	ENST00000534358.1:c.10195C>T	p.Pro3399Ser	p.P3399S	ENST00000534358	NM_005933.3	3399	Cct/Tct																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858530	57858530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	72	332	0	ENST00000228682.2:c.268G>T	p.Asp90Tyr	p.D90Y	ENST00000228682	NM_005269.2	90	Gat/Tat																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863230	57863230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	33	278	0	ENST00000228682.2:c.1325C>A	p.Pro442His	p.P442H	ENST00000228682	NM_005269.2	442	cCt/cAt																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133667	41133667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	80	258	0	ENST00000379561.5:c.1961C>T	p.Ser654Leu	p.S654L	ENST00000379561	NM_002015.3	654	tCa/tTa																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986623	36986623	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	25	267	1	ENST00000354822.5:c.1066C>T	p.Gln356Ter	p.Q356*	ENST00000354822	NM_001079668.2	356	Cag/Tag																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562840	95562840	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	55	313	0	ENST00000343455.3:c.4417del	p.Ser1473GlnfsTer17	p.S1473Qfs*17	ENST00000343455	NM_177438.2	1473	Tca/ca																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434731	99434731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	32	306	0	ENST00000268035.6:c.818G>A	p.Gly273Asp	p.G273D	ENST00000268035	NM_000875.3	273	gGc/gAc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50811839	50811839	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	58	204	0	ENST00000398568.2:c.1116G>A	p.Trp372Ter	p.W372*	ENST00000398568	NM_001042412.1	372	tgG/tgA																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828818	72828818	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	28	346	0	ENST00000268489.5:c.7763T>C	p.Leu2588Pro	p.L2588P	ENST00000268489	NM_006885.3	2588	cTg/cCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830005	72830005	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	71	300	0	ENST00000268489.5:c.6576G>C	p.Trp2192Cys	p.W2192C	ENST00000268489	NM_006885.3	2192	tgG/tgC																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992134	72992134	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	73	351	0	ENST00000268489.5:c.1911del	p.Ser638ValfsTer22	p.S638Vfs*22	ENST00000268489	NM_006885.3	637	ggG/gg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883689	37883689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	75	382	0	ENST00000269571.5:c.3301C>A	p.Leu1101Ile	p.L1101I	ENST00000269571		1101	Ctc/Atc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56434933	56434933	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	125	359	0	ENST00000407977.2:c.2204T>C	p.Leu735Pro	p.L735P	ENST00000407977		735	cTg/cCg																																																																															
CD79B	974	MSKCC	GRCh37	17	62006591	62006591	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	34	267	0	ENST00000392795.3:c.688G>T	p.Glu230Ter	p.E230*	ENST00000392795	NM_001039933.1	230	Gag/Tag																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78857643	78857644	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	30	310	0	ENST00000306801.3:c.1715dup	p.Leu572PhefsTer31	p.L572Ffs*31	ENST00000306801	NM_020761.2	571	-/T																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604628	48604628	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	23	243	0	ENST00000342988.3:c.1450C>A	p.Leu484Met	p.L484M	ENST00000342988	NM_005359.5	484	Ctg/Atg																																																																															
STK11	6794	MSKCC	GRCh37	19	1206950	1206950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	63	224	0	ENST00000326873.7:c.38C>T	p.Thr13Met	p.T13M	ENST00000326873	NM_000455.4	13	aCg/aTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2214503	2214503	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	69	334	0	ENST00000398665.3:c.1831T>C	p.Trp611Arg	p.W611R	ENST00000398665	NM_032482.2	611	Tgg/Cgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123656	11123658	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	54	299	1	ENST00000344626.4:c.2314_2316del	p.Asn772del	p.N772del	ENST00000344626	NM_003072.3	769	tACAac/tac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141497	11141497	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	138	279	0	ENST00000344626.4:c.3474del	p.Leu1161SerfsTer3	p.L1161Sfs*3	ENST00000344626	NM_003072.3	1158	gcT/gc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18968231	18968231	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	66	274	0	ENST00000262803.5:c.2071C>A	p.Leu691Met	p.L691M	ENST00000262803	NM_002911.3	691	Ctg/Atg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213597	36213597	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	37	307	0	ENST00000222270.7:c.2699A>G	p.Asp900Gly	p.D900G	ENST00000222270	NM_014727.1	900	gAt/gGt																																																																															
CD79A	973	MSKCC	GRCh37	19	42384765	42384765	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	29	228	0	ENST00000221972.3:c.527T>C	p.Leu176Ser	p.L176S	ENST00000221972	NM_021601.3	176	tTg/tCg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919705	50919705	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	61	374	0	ENST00000440232.2:c.2873T>C	p.Leu958Pro	p.L958P	ENST00000440232	NM_002691.3	958	cTg/cCg																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631087	67631087	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	42	331	0	ENST00000272342.5:c.1277del	p.Asn426IlefsTer13	p.N426Ifs*13	ENST00000272342	NM_019002.3	425	Aaa/aa																																																																															
ACVR1	90	MSKCC	GRCh37	2	158634740	158634740	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs746369903		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	80	307	2	ENST00000263640.3:c.446T>A	p.Phe149Tyr	p.F149Y	ENST00000263640	NM_001105.4	149	tTt/tAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566715	212566715	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	81	331	0	ENST00000342788.4:c.1466A>C	p.Asp489Ala	p.D489A	ENST00000342788	NM_005235.2	489	gAc/gCc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9543629	9543629	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	67	244	0	ENST00000353224.5:c.1525A>G	p.Met509Val	p.M509V	ENST00000353224	NM_177990.2	509	Atg/Gtg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46281679	46281679	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1332677783		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	26	263	0	ENST00000371998.3:c.4126T>G	p.Phe1376Val	p.F1376V	ENST00000371998		1376	Ttt/Gtt																																																																															
ERG	2078	MSKCC	GRCh37	21	39795428	39795428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	30	327	0	ENST00000288319.7:c.292G>T	p.Asp98Tyr	p.D98Y	ENST00000288319	NM_182918.3	98	Gac/Tac																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645748	12645749	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	27	313	0	ENST00000251849.4:c.720dup	p.Asn241Ter	p.N241*	ENST00000251849	NM_002880.3	240	-/T																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	21	280	0	ENST00000359013.4:c.1657C>A	p.Arg553Ser	p.R553S	ENST00000359013	NM_001024847.2	553	Cgt/Agt																																																																															
BCL6	604	MSKCC	GRCh37	3	187442842	187442842	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	52	306	0	ENST00000232014.4:c.1864C>A	p.Leu622Ile	p.L622I	ENST00000232014	NM_001130845.1	622	Ctt/Att																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356185	66356185	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	33	332	0	ENST00000273854.3:c.1312A>G	p.Thr438Ala	p.T438A	ENST00000273854	NM_004439.5	438	Acc/Gcc																																																																															
TET2	54790	MSKCC	GRCh37	4	106157120	106157120	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	45	315	0	ENST00000380013.4:c.2021A>G	p.Gln674Arg	p.Q674R	ENST00000380013	NM_001127208.2	674	cAg/cGg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539113	187539113	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	43	326	0	ENST00000441802.2:c.8627A>G	p.Asp2876Gly	p.D2876G	ENST00000441802	NM_005245.3	2876	gAc/gGc																																																																															
MSH3	4437	MSKCC	GRCh37	5	80024714	80024714	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	34	196	0	ENST00000265081.6:c.1498A>T	p.Ile500Phe	p.I500F	ENST00000265081	NM_002439.4	500	Att/Ttt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517817	176517817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	28	338	0	ENST00000292408.4:c.427C>A	p.Pro143Thr	p.P143T	ENST00000292408	NM_213647.1	143	Ccc/Acc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33286791	33286791	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369424162		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	34	358	0	ENST00000374542.5:c.2146C>T	p.Arg716Trp	p.R716W	ENST00000374542	NM_001141970.1	716	Cgg/Tgg																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969981	161969981	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749768565		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	66	243	0	ENST00000366898.1:c.988G>A	p.Val330Met	p.V330M	ENST00000366898	NM_004562.2	330	Gtg/Atg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70982049	70982049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	60	278	0	ENST00000276594.2:c.47G>A	p.Cys16Tyr	p.C16Y	ENST00000276594	NM_024504.3	16	tGc/tAc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739380	145739380	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	54	276	2	ENST00000428558.2:c.1990C>A	p.Leu664Ile	p.L664I	ENST00000428558	NM_004260.3	664	Ctc/Atc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2039871	2039871	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756891197		P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	29	385	0	ENST00000349721.2:c.761C>T	p.Pro254Leu	p.P254L	ENST00000349721	NM_003070.3	254	cCg/cTg																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80646014	80646014	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	29	204	0	ENST00000286548.4:c.136+2T>C		p.X46_splice	ENST00000286548	NM_002072.3	46																																																																																
SYK	6850	MSKCC	GRCh37	9	93636975	93636975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	53	328	0	ENST00000375746.1:c.1025C>A	p.Pro342His	p.P342H	ENST00000375746	NM_001174167.1	342	cCc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70357469	70357469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	25	303	0	ENST00000374080.3:c.5810G>A	p.Gly1937Asp	p.G1937D	ENST00000374080		1937	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0067653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	54	272	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs794727798		P-0067653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	157	363	0	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374882	45374882	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs776149698		P-0067653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	132	363	0	ENST00000262160.6:c.961C>T	p.Arg321Ter	p.R321*	ENST00000262160	NM_005901.5	321	Cga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212570063	212570063	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746784831		P-0067653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	22	324	0	ENST00000342788.4:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000342788	NM_005235.2	393	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175322	112175322	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0067653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	209	359	0	ENST00000257430.4:c.4031C>A	p.Ser1344Ter	p.S1344*	ENST00000257430	NM_000038.5	1344	tCa/tAa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46205319	46205319	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	53	324	0	ENST00000334344.6:c.403C>T	p.Gln135Ter	p.Q135*	ENST00000334344	NM_152641.2	135	Caa/Taa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554728	63554729	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0067653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	82	362	0	ENST00000307078.5:c.10dup	p.Ala4GlyfsTer16	p.A4Gfs*16	ENST00000307078	NM_004655.3	4	gct/gGct																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11136988	11136988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	72	220	3	ENST00000344626.4:c.3181G>A	p.Glu1061Lys	p.E1061K	ENST00000344626	NM_003072.3	1061	Gag/Aag																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730061	41730061	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	81	360	0	ENST00000242208.4:c.468G>T	p.Trp156Cys	p.W156C	ENST00000242208	NM_002192.2	156	tgG/tgT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0067655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	51	417	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488721	212488721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	31	422	0	ENST00000342788.4:c.2128C>A	p.Leu710Ile	p.L710I	ENST00000342788	NM_005235.2	710	Ctt/Att																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	54	422	0	ENST00000257430.4:c.3919dup	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
BIRC3	330	MSKCC	GRCh37	11	102207672	102207672	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	18	408	0	ENST00000263464.3:c.1654C>G	p.Gln552Glu	p.Q552E	ENST00000263464	NM_001165.4	552	Caa/Gaa																																																																															
MGA	23269	MSKCC	GRCh37	15	41961712	41961712	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	33	479	0	ENST00000219905.7:c.620T>G	p.Val207Gly	p.V207G	ENST00000219905	NM_001164273.1	207	gTg/gGg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099566	157099566	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1022306360		P-0067655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	64	318	0	ENST00000346085.5:c.503G>C	p.Gly168Ala	p.G168A	ENST00000346085	NM_020732.3	168	gGc/gCc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913237		P-0067663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	135	265	0	ENST00000369535.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000369535	NM_002524.4	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577586	7577586	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587781589		P-0067663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	196	301	0	ENST00000269305.4:c.695T>C	p.Ile232Thr	p.I232T	ENST00000269305	NM_001126112.2	232	aTc/aCc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89156986	89156986	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0067663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	122	236	0	ENST00000336596.2:c.88G>A	p.Val30Ile	p.V30I	ENST00000336596	NM_005233.5	30	Gtc/Atc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0067666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	296	355	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
POLE	5426	MSKCC	GRCh37	12	133241895	133241895	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1483635586		P-0067666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	238	361	0	ENST00000320574.5:c.2461C>T	p.Arg821Cys	p.R821C	ENST00000320574	NM_006231.2	821	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578206	7578207	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0067666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	320	437	0	ENST00000269305.4:c.642_643del	p.His214GlnfsTer7	p.H214Qfs*7	ENST00000269305	NM_001126112.2	214	caTAgt/cagt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439834	52439834	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777664260		P-0067666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	159	448	0	ENST00000460680.1:c.878C>T	p.Pro293Leu	p.P293L	ENST00000460680	NM_004656.3	293	cCg/cTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468316	120468316	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587684919		P-0067666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	138	416	0	ENST00000256646.2:c.4123G>A	p.Glu1375Lys	p.E1375K	ENST00000256646	NM_024408.3	1375	Gag/Aag																																																																															
EP300	2033	MSKCC	GRCh37	22	41531849	41531849	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0067666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	134	369	0	ENST00000263253.7:c.1561G>T	p.Gly521Ter	p.G521*	ENST00000263253	NM_001429.3	521	Gga/Tga																																																																															
ATR	545	MSKCC	GRCh37	3	142234337	142234337	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0067666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	201	308	0	ENST00000350721.4:c.4403C>A	p.Ser1468Ter	p.S1468*	ENST00000350721	NM_001184.3	1468	tCa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112175572	112175575	+	frameshift_variant	Frame_Shift_Del	DEL	TGGA	TGGA	-			P-0067666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	254	461	0	ENST00000257430.4:c.4281_4284del	p.Gly1428LysfsTer44	p.G1428Kfs*44	ENST00000257430	NM_000038.5	1427	ccTGGA/cc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429978	78429978	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	111	552	1	ENST00000370768.2:c.901del	p.Ile301TyrfsTer22	p.I301Yfs*22	ENST00000370768	NM_003902.3	301	Ata/ta																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468085	120468085	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	152	595	0	ENST00000256646.2:c.4354G>T	p.Gly1452Trp	p.G1452W	ENST00000256646	NM_024408.3	1452	Ggg/Tgg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193099338	193099338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	21	365	0	ENST00000367435.3:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000367435	NM_024529.4	91	cGa/cAa																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488894	231488894	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	119	541	0	ENST00000295050.7:c.1263del	p.Phe421LeufsTer7	p.F421Lfs*7	ENST00000295050	NM_032018.5	419	aaT/aa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100720	8100720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	38	495	0	ENST00000346208.3:c.694G>A	p.Gly232Arg	p.G232R	ENST00000346208		232	Gga/Aga																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649927	88649927	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	63	308	0	ENST00000372037.3:c.176T>A	p.Leu59Ter	p.L59*	ENST00000372037	NM_004329.2	59	tTa/tAa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946996	71946996	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs754591389		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	22	510	0	ENST00000298229.2:c.2845C>T	p.Arg949Ter	p.R949*	ENST00000298229	NM_001567.3	949	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108141874	108141874	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587781558		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	120	426	1	ENST00000278616.4:c.2921+1G>A		p.X974_splice	ENST00000278616	NM_000051.3	974																																																																																
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	92	419	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433950	49433950	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780306423		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	21	602	0	ENST00000301067.7:c.7603C>T	p.Arg2535Cys	p.R2535C	ENST00000301067	NM_003482.3	2535	Cgt/Tgt																																																																															
CDK8	1024	MSKCC	GRCh37	13	26959366	26959366	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1418353379		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	112	396	0	ENST00000381527.3:c.533G>A	p.Arg178Gln	p.R178Q	ENST00000381527	NM_001260.1	178	cGa/cAa																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134571	41134571	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760394095		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	107	550	0	ENST00000379561.5:c.1057G>A	p.Ala353Thr	p.A353T	ENST00000379561	NM_002015.3	353	Gca/Aca																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435499	110435499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	27	486	0	ENST00000375856.3:c.2902G>A	p.Asp968Asn	p.D968N	ENST00000375856	NM_003749.2	968	Gac/Aac																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	117	483	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38614463	38614463	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	19	346	0	ENST00000299084.4:c.234del	p.Asp79ThrfsTer42	p.D79Tfs*42	ENST00000299084	NM_152594.2	77	Aaa/aa																																																																															
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1023835002		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	96	459	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																															
B2M	567	MSKCC	GRCh37	15	45003812	45003812	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	126	525	0	ENST00000558401.1:c.67+1G>A		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	109	590	7	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354328	354328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	84	396	0	ENST00000262320.3:c.1230G>T	p.Glu410Asp	p.E410D	ENST00000262320	NM_003502.3	410	gaG/gaT																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2647124	2647124	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	23	382	0	ENST00000342085.4:c.1402G>T	p.Gly468Cys	p.G468C	ENST00000342085	NM_002613.4	468	Ggt/Tgt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639657	3639657	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1394177026		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	131	687	0	ENST00000294008.3:c.3982G>A	p.Val1328Ile	p.V1328I	ENST00000294008	NM_032444.2	1328	Gtc/Atc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821998	72821998	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	154	633	0	ENST00000268489.5:c.10177C>T	p.Gln3393Ter	p.Q3393*	ENST00000268489	NM_006885.3	3393	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829643	72829643	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763494543		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	38	498	0	ENST00000268489.5:c.6938G>A	p.Arg2313His	p.R2313H	ENST00000268489	NM_006885.3	2313	cGt/cAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984418	72984418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	117	530	0	ENST00000268489.5:c.3166C>T	p.Arg1056Trp	p.R1056W	ENST00000268489	NM_006885.3	1056	Cgg/Tgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992316	72992316	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62640001		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	121	657	2	ENST00000268489.5:c.1729G>A	p.Val577Ile	p.V577I	ENST00000268489	NM_006885.3	577	Gtc/Atc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347087	89347087	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762574237		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	115	637	0	ENST00000301030.4:c.5863G>A	p.Glu1955Lys	p.E1955K	ENST00000301030	NM_001256183.1	1955	Gag/Aag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349640	89349641	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs772267579		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	126	529	12	ENST00000301030.4:c.3309dup	p.Asp1104ArgfsTer2	p.D1104Rfs*2	ENST00000301030	NM_001256183.1	1103	-/A																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	118	707	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	26	511	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622369	1622369	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143406385		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	52	523	0	ENST00000344749.5:c.595G>A	p.Ala199Thr	p.A199T	ENST00000344749	NM_001136139.2	199	Gcc/Acc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10264977	10264977	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1486893166		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	96	538	0	ENST00000340748.4:c.1963G>A	p.Val655Ile	p.V655I	ENST00000340748		655	Gtc/Atc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367894	15367894	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	44	457	0	ENST00000263377.2:c.1432A>G	p.Lys478Glu	p.K478E	ENST00000263377	NM_058243.2	478	Aag/Gag																																																																															
AXL	558	MSKCC	GRCh37	19	41765523	41765523	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199709000		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	104	548	0	ENST00000301178.4:c.2399G>A	p.Arg800Gln	p.R800Q	ENST00000301178	NM_021913.4	800	cGg/cAg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422684	47422684	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1298488368		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	144	501	0	ENST00000404338.3:c.752G>A	p.Arg251Gln	p.R251Q	ENST00000404338	NM_004491.4	251	cGg/cAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	89	577	5	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99193506	99193506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	37	618	0	ENST00000074304.5:c.2701C>T	p.Arg901Cys	p.R901C	ENST00000074304	NM_001134224.1	901	Cgt/Tgt																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128038133	128038133	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1369244363		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	115	437	0	ENST00000285398.2:c.1417G>A	p.Glu473Lys	p.E473K	ENST00000285398	NM_000122.1	473	Gaa/Aaa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523270	9523270	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367986819		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	104	482	0	ENST00000353224.5:c.1967G>A	p.Arg656Gln	p.R656Q	ENST00000353224	NM_177990.2	656	cGg/cAg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31374365	31374365	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768468807		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	120	579	0	ENST00000328111.2:c.364C>T	p.Arg122Cys	p.R122C	ENST00000328111	NM_006892.3	122	Cgt/Tgt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31386388	31386388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	112	580	2	ENST00000328111.2:c.1613G>A	p.Arg538His	p.R538H	ENST00000328111	NM_006892.3	538	cGc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40738973	40738973	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	83	426	0	ENST00000373198.4:c.3311G>T	p.Ser1104Ile	p.S1104I	ENST00000373198	NM_133170.3	1104	aGt/aTt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739099	40739099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs536918490		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	88	438	0	ENST00000373198.4:c.3185G>A	p.Arg1062His	p.R1062H	ENST00000373198	NM_133170.3	1062	cGc/cAc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231782	36231782	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs74315450		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	136	663	0	ENST00000300305.3:c.602G>A	p.Arg201Gln	p.R201Q	ENST00000300305		201	cGa/cAa																																																																															
RAF1	5894	MSKCC	GRCh37	3	12627233	12627233	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs941573221		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	129	373	0	ENST00000251849.4:c.1483C>T	p.Arg495Cys	p.R495C	ENST00000251849	NM_002880.3	495	Cgc/Tgc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	79	547	0	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52438494	52438494	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756443059		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	26	477	0	ENST00000460680.1:c.1225G>A	p.Val409Met	p.V409M	ENST00000460680	NM_004656.3	409	Gtg/Atg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851646	134851646	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757558701		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	96	495	0	ENST00000398015.3:c.1052G>A	p.Arg351Gln	p.R351Q	ENST00000398015	NM_004441.4	351	cGg/cAg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665096	138665096	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs758370933		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	60	404	0	ENST00000330315.3:c.469C>G	p.Pro157Ala	p.P157A	ENST00000330315	NM_023067.3	157	Ccc/Gcc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748123	41748123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	46	398	0	ENST00000226382.2:c.646G>A	p.Gly216Ser	p.G216S	ENST00000226382	NM_003924.3	216	Ggc/Agc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	151	570	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244280	153244280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	155	438	1	ENST00000281708.4:c.1877C>T	p.Ala626Val	p.A626V	ENST00000281708	NM_033632.3	626	gCt/gTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510101	187510101	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375425015		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	106	519	0	ENST00000441802.2:c.13412C>T	p.Ala4471Val	p.A4471V	ENST00000441802	NM_005245.3	4471	gCg/gTg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526444	31526444	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs974715206		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	37	518	0	ENST00000344624.3:c.596G>A	p.Ser199Asn	p.S199N	ENST00000344624		199	aGc/aAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592108	67592108	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1419325070		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	108	452	0	ENST00000274335.5:c.1924C>T	p.Arg642Ter	p.R642*	ENST00000274335		642	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112170862	112170862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs1060503318		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	118	396	0	ENST00000257430.4:c.1958G>T	p.Arg653Met	p.R653M	ENST00000257430	NM_000038.5	653	aGg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	175	606	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755445139		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	91	581	0	ENST00000261937.6:c.89dup	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402605	20402605	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775788562		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	80	539	0	ENST00000346618.3:c.142G>A	p.Ala48Thr	p.A48T	ENST00000346618	NM_001949.4	48	Gcc/Acc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287520	33287520	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141395832		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	146	588	0	ENST00000374542.5:c.1577G>A	p.Arg526His	p.R526H	ENST00000374542	NM_001141970.1	526	cGc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157517377	157517377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	106	403	0	ENST00000346085.5:c.3941C>T	p.Pro1314Leu	p.P1314L	ENST00000346085	NM_020732.3	1314	cCc/cTc																																																																															
RAC1	5879	MSKCC	GRCh37	7	6431649	6431649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	84	298	0	ENST00000356142.4:c.202C>T	p.Arg68Cys	p.R68C	ENST00000356142	NM_018890.3	68	Cgc/Tgc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2060867	2060867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	134	560	0	ENST00000349721.2:c.1573C>T	p.Arg525Cys	p.R525C	ENST00000349721	NM_003070.3	525	Cgt/Tgt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8733794	8733794	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs949202374		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	110	463	1	ENST00000356435.5:c.50G>A	p.Arg17His	p.R17H	ENST00000356435		17	cGc/cAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401847	139401847	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs548083258		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	43	657	0	ENST00000277541.6:c.3553G>A	p.Asp1185Asn	p.D1185N	ENST00000277541	NM_017617.3	1185	Gac/Aac																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139811026	139811026	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	129	457	0	ENST00000247668.2:c.637C>T	p.Arg213Ter	p.R213*	ENST00000247668	NM_021138.3	213	Cga/Tga																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15821890	15821890	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188867560		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	110	438	0	ENST00000307771.7:c.283G>A	p.Ala95Thr	p.A95T	ENST00000307771	NM_005089.3	95	Gcg/Acg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921559	39921559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746716983		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	128	439	0	ENST00000378444.4:c.4261C>T	p.Arg1421Cys	p.R1421C	ENST00000378444	NM_001123385.1	1421	Cgc/Tgc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411276	63411276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	113	621	0	ENST00000330258.3:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000330258	NM_152424.3	631	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412151	63412151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	110	594	0	ENST00000330258.3:c.1016G>A	p.Ser339Asn	p.S339N	ENST00000330258	NM_152424.3	339	aGt/aAt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946462	2946462	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758055212		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	88	509	0	ENST00000396946.4:c.3275G>A	p.Arg1092Gln	p.R1092Q	ENST00000396946	NM_032415.4	1092	cGa/cAa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258437	16258437	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1308982924		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	182	621	0	ENST00000375759.3:c.5702G>A	p.Arg1901His	p.R1901H	ENST00000375759	NM_015001.2	1901	cGc/cAc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120471692	120471692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	148	521	0	ENST00000256646.2:c.3799G>A	p.Glu1267Lys	p.E1267K	ENST00000256646	NM_024408.3	1267	Gag/Aag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724571	162724571	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	131	583	0	ENST00000367921.3:c.343G>T	p.Ala115Ser	p.A115S	ENST00000367921	NM_006182.2	115	Gcc/Tcc																																																																															
CTR9	9646	MSKCC	GRCh37	11	10794724	10794724	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	45	450	0	ENST00000361367.2:c.2631G>T	p.Gln877His	p.Q877H	ENST00000361367	NM_014633.3	877	caG/caT																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94212926	94212926	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	16	385	0	ENST00000323929.3:c.316T>G	p.Phe106Val	p.F106V	ENST00000323929	NM_005591.3	106	Ttt/Gtt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375914	118375914	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	138	576	0	ENST00000534358.1:c.9307C>A	p.Gln3103Lys	p.Q3103K	ENST00000534358	NM_005933.3	3103	Caa/Aaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431963	49431963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	114	626	0	ENST00000301067.7:c.9176C>T	p.Thr3059Ile	p.T3059I	ENST00000301067	NM_003482.3	3059	aCt/aTt																																																																															
RB1	5925	MSKCC	GRCh37	13	49027238	49027238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	105	358	0	ENST00000267163.4:c.1805C>T	p.Ala602Val	p.A602V	ENST00000267163	NM_000321.2	602	gCa/gTa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518137	103518137	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	126	563	1	ENST00000355739.4:c.2075A>G	p.Glu692Gly	p.E692G	ENST00000355739	NM_000123.3	692	gAa/gGa																																																																															
AKT1	207	MSKCC	GRCh37	14	105241991	105241991	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1166659979		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	39	474	0	ENST00000349310.3:c.433G>A	p.Val145Met	p.V145M	ENST00000349310	NM_001014432.1	145	Gtg/Atg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701222	43701222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	134	551	0	ENST00000382044.4:c.5473G>A	p.Ala1825Thr	p.A1825T	ENST00000382044	NM_001141980.1	1825	Gcc/Acc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43713297	43713297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	129	572	0	ENST00000382044.4:c.4176G>T	p.Gln1392His	p.Q1392H	ENST00000382044	NM_001141980.1	1392	caG/caT																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2089941	2089941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	40	559	0	ENST00000219066.1:c.923C>T	p.Ala308Val	p.A308V	ENST00000219066	NM_002528.5	308	gCc/gTc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222540	2222540	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	125	525	0	ENST00000326181.6:c.734T>C	p.Met245Thr	p.M245T	ENST00000326181	NM_032271.2	245	aTg/aCg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223788	2223788	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	80	510	0	ENST00000326181.6:c.1087-1G>T		p.X363_splice	ENST00000326181	NM_032271.2	363																																																																																
SLX4	84464	MSKCC	GRCh37	16	3639473	3639473	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773210318		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	105	617	0	ENST00000294008.3:c.4166C>T	p.Ala1389Val	p.A1389V	ENST00000294008	NM_032444.2	1389	gCg/gTg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646711	23646711	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148102335		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	116	484	0	ENST00000261584.4:c.1156A>G	p.Thr386Ala	p.T386A	ENST00000261584	NM_024675.3	386	Acc/Gcc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50818243	50818243	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs758765051		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	21	470	0	ENST00000398568.2:c.1821A>T	p.Leu607Phe	p.L607F	ENST00000398568	NM_001042412.1	607	ttA/ttT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829115	72829115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	110	534	0	ENST00000268489.5:c.7466C>A	p.Pro2489His	p.P2489H	ENST00000268489	NM_006885.3	2489	cCt/cAt																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544957	86544957	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	18	467	0	ENST00000262426.4:c.782C>A	p.Ala261Asp	p.A261D	ENST00000262426	NM_001451.2	261	gCc/gAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89355018	89355018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	131	553	0	ENST00000301030.4:c.662T>C	p.Leu221Pro	p.L221P	ENST00000301030	NM_001256183.1	221	cTg/cCg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216421	7216421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	145	650	0	ENST00000380728.2:c.827C>A	p.Pro276His	p.P276H	ENST00000380728		276	cCc/cAc																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110540	8110540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	101	466	1	ENST00000585124.1:c.352G>A	p.Val118Met	p.V118M	ENST00000585124	NM_004217.3	118	Gtg/Atg																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679852	33679852	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	137	597	0	ENST00000308377.4:c.2229del	p.Glu744LysfsTer4	p.E744Kfs*4	ENST00000308377	NM_152270.3	743	aaA/aa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59858200	59858200	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs766516963		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	110	429	0	ENST00000259008.2:c.1794+1G>A		p.X598_splice	ENST00000259008	NM_032043.2	598																																																																																
MLLT1	4298	MSKCC	GRCh37	19	6216521	6216521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	74	441	0	ENST00000252674.7:c.1202C>A	p.Pro401His	p.P401H	ENST00000252674	NM_005934.3	401	cCc/cAc																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6230592	6230592	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1196954792		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	104	436	1	ENST00000252674.7:c.409C>T	p.Arg137Trp	p.R137W	ENST00000252674	NM_005934.3	137	Cgg/Tgg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10251514	10251514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	135	542	0	ENST00000340748.4:c.3418C>T	p.Arg1140Trp	p.R1140W	ENST00000340748		1140	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096951	11096951	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138689221		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	111	593	0	ENST00000344626.4:c.442G>A	p.Gly148Arg	p.G148R	ENST00000344626	NM_003072.3	148	Ggg/Agg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15284952	15284952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	24	529	0	ENST00000263388.2:c.4663G>A	p.Val1555Ile	p.V1555I	ENST00000263388	NM_000435.2	1555	Gtc/Atc																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379820	17379820	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199925580		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	44	532	0	ENST00000359435.4:c.205G>A	p.Gly69Ser	p.G69S	ENST00000359435	NM_001033549.1	69	Ggc/Agc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213908	36213908	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1166009631		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	124	547	0	ENST00000222270.7:c.2734G>A	p.Ala912Thr	p.A912T	ENST00000222270	NM_014727.1	912	Gcg/Acg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905940	50905940	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	113	584	0	ENST00000440232.2:c.912G>A	p.Trp304Ter	p.W304*	ENST00000440232	NM_002691.3	304	tgG/tgA																																																																															
ALK	238	MSKCC	GRCh37	2	29416361	29416361	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1343057642		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	127	571	0	ENST00000389048.3:c.4592del	p.Gly1531ValfsTer27	p.G1531Vfs*27	ENST00000389048	NM_004304.4	1531	gGt/gt																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67632273	67632273	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	91	458	0	ENST00000272342.5:c.2459A>C	p.Lys820Thr	p.K820T	ENST00000272342	NM_019002.3	820	aAg/aCg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096552	178096552	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776472261		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	128	547	0	ENST00000397062.3:c.779C>T	p.Thr260Ile	p.T260I	ENST00000397062	NM_006164.4	260	aCa/aTa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251728	212251728	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	109	562	0	ENST00000342788.4:c.3331C>A	p.Leu1111Ile	p.L1111I	ENST00000342788	NM_005235.2	1111	Cta/Ata																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661482	227661482	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	40	639	0	ENST00000305123.5:c.1973A>G	p.Asp658Gly	p.D658G	ENST00000305123	NM_005544.2	658	gAc/gGc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252958	36252958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	166	482	0	ENST00000300305.3:c.404G>A	p.Gly135Asp	p.G135D	ENST00000300305		135	gGc/gAc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42839732	42839732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	147	574	0	ENST00000398585.3:c.1507G>A	p.Ala503Thr	p.A503T	ENST00000398585	NM_001135099.1	503	Gcc/Acc																																																																															
NF2	4771	MSKCC	GRCh37	22	30032780	30032780	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1185209056		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	137	548	0	ENST00000338641.4:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000338641	NM_000268.3	52	cGg/cAg																																																																															
NF2	4771	MSKCC	GRCh37	22	30069385	30069385	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	113	535	0	ENST00000338641.4:c.1250T>C	p.Ile417Thr	p.I417T	ENST00000338641	NM_000268.3	417	aTt/aCt																																																																															
VHL	7428	MSKCC	GRCh37	3	10191551	10191551	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs778205243		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	103	478	0	ENST00000256474.2:c.544A>G	p.Arg182Gly	p.R182G	ENST00000256474	NM_000551.3	182	Agg/Ggg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936039	49936039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	143	668	0	ENST00000296474.3:c.1631G>A	p.Gly544Asp	p.G544D	ENST00000296474	NM_002447.2	544	gGc/gAc																																																																															
MITF	4286	MSKCC	GRCh37	3	70014295	70014295	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756044021		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	100	520	0	ENST00000352241.4:c.1459G>A	p.Val487Ile	p.V487I	ENST00000352241	NM_198159.2	487	Gtc/Atc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247445	71247445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	125	488	0	ENST00000318789.4:c.88G>A	p.Gly30Ser	p.G30S	ENST00000318789	NM_032682.5	30	Ggc/Agc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920371	134920371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	117	547	0	ENST00000398015.3:c.2186C>T	p.Ala729Val	p.A729V	ENST00000398015	NM_004441.4	729	gCt/gTt																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374673	149374673	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1377588889		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	95	445	0	ENST00000360632.3:c.421T>A	p.Tyr141Asn	p.Y141N	ENST00000360632	NM_015472.4	141	Tac/Aac																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980551	1980551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	127	597	0	ENST00000382895.3:c.4013C>A	p.Thr1338Asn	p.T1338N	ENST00000382895	NM_133330.2	1338	aCt/aAt																																																																															
KDR	3791	MSKCC	GRCh37	4	55984780	55984780	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	100	431	0	ENST00000263923.4:c.349T>C	p.Tyr117His	p.Y117H	ENST00000263923	NM_002253.2	117	Tat/Cat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539699	187539699	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	26	569	0	ENST00000441802.2:c.8041C>A	p.Pro2681Thr	p.P2681T	ENST00000441802	NM_005245.3	2681	Cca/Aca																																																																															
SDHA	6389	MSKCC	GRCh37	5	251215	251215	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs9809219		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	47	227	0	ENST00000264932.6:c.1660C>T	p.Arg554Trp	p.R554W	ENST00000264932	NM_004168.2	554	Cgg/Tgg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177542	56177542	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	140	507	0	ENST00000399503.3:c.2515G>T	p.Glu839Ter	p.E839*	ENST00000399503	NM_005921.1	839	Gaa/Taa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685255	86685255	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs144692925		P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	106	428	0	ENST00000274376.6:c.2971C>A	p.Leu991Met	p.L991M	ENST00000274376	NM_002890.2	991	Ctg/Atg																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158413	26158413	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	110	496	0	ENST00000289316.2:c.16A>C	p.Lys6Gln	p.K6Q	ENST00000289316	NM_138720.2	6	Aag/Cag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188755	32188755	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	109	682	0	ENST00000375023.3:c.799G>T	p.Gly267Cys	p.G267C	ENST00000375023	NM_004557.3	267	Ggt/Tgt																																																																															
NBN	4683	MSKCC	GRCh37	8	90947820	90947820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	18	276	0	ENST00000265433.3:c.2255G>A	p.Arg752Lys	p.R752K	ENST00000265433	NM_002485.4	752	aGg/aAg																																																																															
NBN	4683	MSKCC	GRCh37	8	90965779	90965779	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	29	453	0	ENST00000265433.3:c.1538C>A	p.Pro513His	p.P513H	ENST00000265433	NM_002485.4	513	cCt/cAt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123205078	123205078	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	30	430	0	ENST00000218089.9:c.2438T>C	p.Leu813Ser	p.L813S	ENST00000218089	NM_001042749.1	813	tTa/tCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0067692-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	255	460	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0067692-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	158	424	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268844	55269425	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACGGGCCATTCTAATAGCCTCAAAATCTCTGCACCAGGGGGATGAAAGAATGCATTTGCCAAGTCCTACAGACTCCAACTTCTACCGTGCCCTGATGGATGAAGAAGACATGGACGACGTGGTGGATGCCGACGAGTACCTCATCCCACAGCAGGGCTTCTTCAGCAGCCCCTCCACGTCACGGACTCCCCTCCTGAGCTCTCTGGTATGAAATCTCTGTCTCTCTCTCTCTCTCAAGCTGTGTCTACTCATTTGAACAAATTGAATTTTAGGGAAAATAACCATCTAGTGAAACTCACATGGATATGAAGTCAATTTTAACCAAATGGTAAAATCAAAATCAAAATAAATTAAGTGTATTAATTATTTTGTTGCATTGCAACAACTTGATTGTAAGCCTTTTAGGTCCACTATGGAATGTAATTAAATCAAAACTAAACCTAGTTGCTCTAAAACTAACGATTAAGACAAAAATTAAACACCTTCACAATATACCCTCCATGAGGCACACCACCTGCATTCAGGAAAAGTGGATGAGATGTGGTACAAGCATTCCATGGGCAACTTCTCTGTTTCTTTTTC	ACGGGCCATTCTAATAGCCTCAAAATCTCTGCACCAGGGGGATGAAAGAATGCATTTGCCAAGTCCTACAGACTCCAACTTCTACCGTGCCCTGATGGATGAAGAAGACATGGACGACGTGGTGGATGCCGACGAGTACCTCATCCCACAGCAGGGCTTCTTCAGCAGCCCCTCCACGTCACGGACTCCCCTCCTGAGCTCTCTGGTATGAAATCTCTGTCTCTCTCTCTCTCTCAAGCTGTGTCTACTCATTTGAACAAATTGAATTTTAGGGAAAATAACCATCTAGTGAAACTCACATGGATATGAAGTCAATTTTAACCAAATGGTAAAATCAAAATCAAAATAAATTAAGTGTATTAATTATTTTGTTGCATTGCAACAACTTGATTGTAAGCCTTTTAGGTCCACTATGGAATGTAATTAAATCAAAACTAAACCTAGTTGCTCTAAAACTAACGATTAAGACAAAAATTAAACACCTTCACAATATACCCTCCATGAGGCACACCACCTGCATTCAGGAAAAGTGGATGAGATGTGGTACAAGCATTCCATGGGCAACTTCTCTGTTTCTTTTTC	-			P-0067692-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	192	537	0	ENST00000275493.2:c.2947-36_3115-2del		p.X983_splice	ENST00000275493	NM_005228.3	983																																																																																
EPCAM	4072	MSKCC	GRCh37	2	47607029	47607029	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0067692-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	48	423	0	ENST00000263735.4:c.779C>G	p.Ser260Ter	p.S260*	ENST00000263735	NM_002354.2	260	tCa/tGa																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0067712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	62	516	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175594	112175594	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0067712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	33	478	0	ENST00000257430.4:c.4303A>T	p.Arg1435Ter	p.R1435*	ENST00000257430	NM_000038.5	1435	Aga/Tga																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245723	46245723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	159	620	0	ENST00000334344.6:c.3817C>T	p.Arg1273Ter	p.R1273*	ENST00000334344	NM_152641.2	1273	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1206165503		P-0067725-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	266	484	0	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435926	56435926	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759290047		P-0067725-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	56	609	0	ENST00000407977.2:c.1211G>A	p.Arg404His	p.R404H	ENST00000407977		404	cGc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900781	3900795	+	inframe_deletion	In_Frame_Del	DEL	CCCTTGAGCCTGGCC	CCCTTGAGCCTGGCC	-			P-0067725-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	260	456	0	ENST00000262367.5:c.301_315del	p.Gly101_Gly105del	p.G101_G105del	ENST00000262367	NM_004380.2	101	GGCCAGGCTCAAGGG/-																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0067824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	45	252	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0067824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	133	322	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0067824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	108	453	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs587782289		P-0067824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	120	433	0	ENST00000269305.4:c.706T>A	p.Tyr236Asn	p.Y236N	ENST00000269305	NM_001126112.2	236	Tac/Aac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874147	151874148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs771193709		P-0067824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	107	523	9	ENST00000262189.6:c.8390dup	p.Glu2798GlyfsTer11	p.E2798Gfs*11	ENST00000262189	NM_170606.2	2797	aag/aaAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730832	40730832	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs914506046		P-0067824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	135	562	0	ENST00000373198.4:c.3703C>T	p.Arg1235Cys	p.R1235C	ENST00000373198	NM_133170.3	1235	Cgc/Tgc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62324601	62324601	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs146221660		P-0067824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	199	500	1	ENST00000482936.1:c.2957G>A	p.Arg986Gln	p.R986Q	ENST00000482936		986	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0067840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	530	478	2	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
APC	324	MSKCC	GRCh37	5	112163701	112163701	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0067840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	99	307	0	ENST00000257430.4:c.1624C>T	p.Gln542Ter	p.Q542*	ENST00000257430	NM_000038.5	542	Cag/Tag																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186503787	186503789	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0067840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	96	434	0	ENST00000323963.5:c.470_472del	p.Val157del	p.V157del	ENST00000323963		155	aTTGtt/att																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910883	114910883	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1477809102		P-0067840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	185	421	0	ENST00000543371.1:c.1001+1G>A		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114920444	114920444	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1219807932		P-0067867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	126	518	0	ENST00000543371.1:c.1385C>T	p.Pro462Leu	p.P462L	ENST00000543371	NM_001198531.1	462	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0067867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	195	401	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	150	509	0	ENST00000342988.3:c.1255G>T	p.Gly419Trp	p.G419W	ENST00000342988	NM_005359.5	419	Ggg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0067867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	306	555	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112164585	112164585	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs398123116		P-0067867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	116	486	0	ENST00000257430.4:c.1659G>A	p.Trp553Ter	p.W553*	ENST00000257430	NM_000038.5	553	tgG/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0067867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	157	659	2	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188296	32188296	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs561687277		P-0067867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	192	839	0	ENST00000375023.3:c.1045G>A	p.Gly349Ser	p.G349S	ENST00000375023	NM_004557.3	349	Ggc/Agc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964419	70964419	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1254551312		P-0067867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	161	601	0	ENST00000276594.2:c.1609C>T	p.Arg537Trp	p.R537W	ENST00000276594	NM_024504.3	537	Cgg/Tgg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852217		P-0067867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	170	368	0	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710491	114710531	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	ATTGCTGCTGGTGGGTGAAAAAAAAATGCCGCAGCTGAACG	ATTGCTGCTGGTGGGTGAAAAAAAAATGCCGCAGCTGAACG	-			P-0067867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	134	480	0	ENST00000543371.1:c.-25_16del		p.*9*	ENST00000543371	NM_001198531.1																																																																																	
HLA-C	3107	MSKCC	GRCh37	6	31239483	31239483	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs281860381		P-0067867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	202	737	0	ENST00000376228.5:c.236A>T	p.Glu79Val	p.E79V	ENST00000376228	NM_002117.5	79	gAg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0067868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	180	480	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0067868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	122	457	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	197	592	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	89	482	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193172951	193172951	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	135	359	0	ENST00000367435.3:c.999G>T	p.Gln333His	p.Q333H	ENST00000367435	NM_024529.4	333	caG/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0067882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			62	206	403	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467697	66467697	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779449792		P-0067882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			61	168	310	0	ENST00000273854.3:c.572G>A	p.Arg191His	p.R191H	ENST00000273854	NM_004439.5	191	cGt/cAt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319854	8319854	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	59	259	0	ENST00000356435.5:c.5647C>T	p.Arg1883Ter	p.R1883*	ENST00000356435		1883	Cga/Tga																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852532	63852532	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	17	277	0	ENST00000279873.7:c.3310C>T	p.Gln1104Ter	p.Q1104*	ENST00000279873	NM_032199.2	1104	Cag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108139218	108139218	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	13	302	0	ENST00000278616.4:c.2720G>C	p.Cys907Ser	p.C907S	ENST00000278616	NM_000051.3	907	tGt/tCt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992921	72992921	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs79835643		P-0067882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	37	309	0	ENST00000268489.5:c.1124G>A	p.Gly375Glu	p.G375E	ENST00000268489	NM_006885.3	375	gGg/gAg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26101011	26101036	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCCCTTCGCTCCCTCCCCCTTACCG	TCCCCTTCGCTCCCTCCCCCTTACCG	-			P-0067882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	148	199	0	ENST00000435504.4:c.56_57+24del		p.X19_splice	ENST00000435504		19																																																																																
PARK2	5071	MSKCC	GRCh37	6	162864350	162864350	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	43	250	0	ENST00000366898.1:c.163A>G	p.Thr55Ala	p.T55A	ENST00000366898	NM_004562.2	55	Act/Gct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921566	178921566	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793349		P-0067917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	34	336	0	ENST00000263967.3:c.1048G>A	p.Asp350Asn	p.D350N	ENST00000263967	NM_006218.2	350	Gac/Aac																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0067917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	64	452	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0067917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	62	459	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	11	380	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740623	58740624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs763475304		P-0067917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	71	511	1	ENST00000305921.3:c.1535dup	p.Asn512LysfsTer16	p.N512Kfs*16	ENST00000305921	NM_003620.3	510	caa/cAaa																																																																															
APC	324	MSKCC	GRCh37	5	112136997	112136997	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0067917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	54	347	0	ENST00000257430.4:c.751G>T	p.Glu251Ter	p.E251*	ENST00000257430	NM_000038.5	251	Gaa/Taa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761412	59761415	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-	rs786203717		P-0067917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	61	372	0	ENST00000259008.2:c.2992_2995del	p.Lys998GlufsTer60	p.K998Efs*60	ENST00000259008	NM_032043.2	998	AAGAga/ga																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856052	111856052	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758024019		P-0067917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	57	521	0	ENST00000341259.2:c.103G>A	p.Val35Ile	p.V35I	ENST00000341259	NM_005475.2	35	Gta/Ata																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903714	114903715	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0067917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	59	386	0	ENST00000543371.1:c.721_722dup	p.Tyr242ArgfsTer10	p.Y242Rfs*10	ENST00000543371	NM_001198531.1	240	tcc/tCCcc																																																																															
JUN	3725	MSKCC	GRCh37	1	59247878	59247886	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	CTTTCAAGG	CTTTCAAGG	TCAAGGTTTTCACTTTTTCACT			P-0067917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	74	507	0	ENST00000371222.2:c.857_865delinsAGTGAAAAAGTGAAAACCTTGA	p.Thr286LysfsTer2	p.T286Kfs*2	ENST00000371222	NM_002228.3	286	aCCTTGAAAGct/aAGTGAAAAAGTGAAAACCTTGAct																																																																															
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0067935-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	48	544	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0067935-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	28	352	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0067935-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	37	367	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0067960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	375	498	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46509360	46509360	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	72	507	0	ENST00000262741.5:c.1371del	p.Ser458ArgfsTer33	p.S458Rfs*33	ENST00000262741	NM_003629.3	457	ccC/cc																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983013	149983013	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	51	494	0	ENST00000253339.5:c.3245G>C	p.Arg1082Thr	p.R1082T	ENST00000253339		1082	aGg/aCg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15976857	15976857	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	19	308	0	ENST00000268712.3:c.3697A>G	p.Arg1233Gly	p.R1233G	ENST00000268712	NM_006311.3	1233	Agg/Ggg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	85	389	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	28	380	0	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat																																																																															
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	81	367	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	134	514	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs750808726		P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	33	426	0	ENST00000261937.6:c.1267dup	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	102	356	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	74	370	1	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	43	433	2	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
ARAF	369	MSKCC	GRCh37	X	47422384	47422384	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	62	357	2	ENST00000377045.4:c.23del	p.Pro8LeufsTer26	p.P8Lfs*26	ENST00000377045	NM_001654.4	6	ggC/gg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs758740142		P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	74	334	3	ENST00000265335.6:c.2801del	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782596		P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	81	453	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972893	32972893	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	79	406	1	ENST00000380152.3:c.10248del	p.Lys3416AsnfsTer11	p.K3416Nfs*11	ENST00000380152		3415	Aaa/aa																																																																															
CASP8	841	MSKCC	GRCh37	2	202131457	202131459	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	69	440	0	ENST00000358485.4:c.430_432del	p.Glu144del	p.E144del	ENST00000358485	NM_001080125.1	142	aAGGag/aag																																																																															
ERG	2078	MSKCC	GRCh37	21	39755427	39755427	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	68	492	0	ENST00000288319.7:c.1338del	p.Phe446LeufsTer59	p.F446Lfs*59	ENST00000288319	NM_182918.3	446	ttT/tt																																																																															
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	75	373	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																															
TET1	80312	MSKCC	GRCh37	10	70446294	70446294	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144991411		P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	118	467	0	ENST00000373644.4:c.5234C>T	p.Thr1745Met	p.T1745M	ENST00000373644	NM_030625.2	1745	aCg/aTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81972428	81972428	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1341635199		P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	75	367	0	ENST00000359376.3:c.3221C>T	p.Pro1074Leu	p.P1074L	ENST00000359376	NM_002661.3	1074	cCc/cTc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	98	379	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	95	427	1	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
CDC42	998	MSKCC	GRCh37	1	22412959	22412959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	62	232	0	ENST00000344548.3:c.206C>T	p.Pro69Leu	p.P69L	ENST00000344548	NM_001039802.1	69	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112128170	112128170	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768233232		P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	90	299	0	ENST00000257430.4:c.673G>A	p.Glu225Lys	p.E225K	ENST00000257430	NM_000038.5	225	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55229299	55229299	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767193132		P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	77	447	2	ENST00000275493.2:c.1606G>A	p.Val536Met	p.V536M	ENST00000275493	NM_005228.3	536	Gtg/Atg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660046	227660046	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3731594		P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	94	441	0	ENST00000305123.5:c.3409G>A	p.Asp1137Asn	p.D1137N	ENST00000305123	NM_005544.2	1137	Gat/Aat																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250494	110250494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	65	302	0	ENST00000374672.4:c.181C>T	p.Arg61Cys	p.R61C	ENST00000374672	NM_004235.4	61	Cgc/Tgc																																																																															
TP63	8626	MSKCC	GRCh37	3	189612184	189612184	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	100	467	0	ENST00000264731.3:c.1936C>A	p.Leu646Ile	p.L646I	ENST00000264731	NM_003722.4	646	Ctc/Atc																																																																															
CDH1	999	MSKCC	GRCh37	16	68849598	68849598	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368690400		P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	115	473	0	ENST00000261769.5:c.1501G>A	p.Val501Met	p.V501M	ENST00000261769	NM_004360.3	501	Gtg/Atg																																																																															
EP300	2033	MSKCC	GRCh37	22	41566520	41566520	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	28	340	0	ENST00000263253.7:c.4397G>T	p.Trp1466Leu	p.W1466L	ENST00000263253	NM_001429.3	1466	tGg/tTg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467088	25467088	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs899717364		P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	85	396	0	ENST00000264709.3:c.1787G>A	p.Arg596Gln	p.R596Q	ENST00000264709	NM_175629.2	596	cGg/cAg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526603	106526603	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1277491292		P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	58	333	0	ENST00000359195.3:c.2896G>A	p.Gly966Arg	p.G966R	ENST00000359195	NM_002649.2	966	Ggg/Agg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228046	36228046	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	192	497	0	ENST00000222270.7:c.7432C>T	p.Gln2478Ter	p.Q2478*	ENST00000222270	NM_014727.1	2478	Cag/Tag																																																																															
B2M	567	MSKCC	GRCh37	15	45007825	45007826	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			746	76	466	0	ENST00000558401.1:c.275_276del	p.Pro92HisfsTer2	p.P92Hfs*2	ENST00000558401	NM_004048.2	91	aCC/a																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489800	40489800	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1356637796		P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	75	423	0	ENST00000264657.5:c.626C>T	p.Ala209Val	p.A209V	ENST00000264657	NM_139276.2	209	gCg/gTg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932002	36932002	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	99	517	0	ENST00000361632.4:c.2467C>T	p.Gln823Ter	p.Q823*	ENST00000361632		823	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557785	187557785	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	87	453	0	ENST00000441802.2:c.3926T>G	p.Val1309Gly	p.V1309G	ENST00000441802	NM_005245.3	1309	gTt/gGt																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326285	62326285	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs746445840		P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	146	365	0	ENST00000482936.1:c.3301G>A	p.Ala1101Thr	p.A1101T	ENST00000482936		1101	Gcc/Acc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18962988	18962988	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	64	414	0	ENST00000262803.5:c.856del	p.Asp286ThrfsTer35	p.D286Tfs*35	ENST00000262803	NM_002911.3	285	gtG/gt																																																																															
MGA	23269	MSKCC	GRCh37	15	41991260	41991260	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	93	356	0	ENST00000219905.7:c.2093-2A>G		p.X698_splice	ENST00000219905	NM_001164273.1	698																																																																																
ABL1	25	MSKCC	GRCh37	9	133759749	133759749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	65	336	0	ENST00000318560.5:c.2072G>A	p.Ser691Asn	p.S691N	ENST00000318560	NM_005157.4	691	aGc/aAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302868	15302869	+	stop_gained	Nonsense_Mutation	DNP	AC	AC	CT			P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	66	432	1	ENST00000263388.2:c.581_582delinsAG	p.Cys194Ter	p.C194*	ENST00000263388	NM_000435.2	194	tGT/tAG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420111	49420111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775381331		P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	92	443	0	ENST00000301067.7:c.15638C>T	p.Thr5213Met	p.T5213M	ENST00000301067	NM_003482.3	5213	aCg/aTg																																																																															
PARK2	5071	MSKCC	GRCh37	6	161781200	161781200	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766915327		P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	76	389	0	ENST00000366898.1:c.1205G>A	p.Arg402His	p.R402H	ENST00000366898	NM_004562.2	402	cGt/cAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624285	89624285	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064795967		P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	65	274	0	ENST00000371953.3:c.59G>A	p.Gly20Glu	p.G20E	ENST00000371953	NM_000314.4	20	gGa/gAa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038862	12038862	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	212	397	0	ENST00000396373.4:c.1155del	p.Asn385LysfsTer5	p.N385Kfs*5	ENST00000396373	NM_001987.4	385	aaC/aa																																																																															
PPARG	5468	MSKCC	GRCh37	3	12447415	12447415	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	96	418	0	ENST00000287820.6:c.654G>T	p.Lys218Asn	p.K218N	ENST00000287820	NM_015869.4	218	aaG/aaT																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300040	137300040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	82	358	1	ENST00000481739.1:c.325C>T	p.Pro109Ser	p.P109S	ENST00000481739	NM_002957.4	109	Ccc/Tcc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0068027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	23	236	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	47	227	0	ENST00000262160.6:c.1391C>A	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tAa																																																																															
CCNE1	898	MSKCC	GRCh37	19	30312660	30312660	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146187350		P-0068027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	29	222	0	ENST00000262643.3:c.641C>T	p.Ala214Val	p.A214V	ENST00000262643	NM_001238.2	214	gCg/gTg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482870	67482870	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	78	240	0	ENST00000327367.4:c.1274C>G	p.Ser425Cys	p.S425C	ENST00000327367	NM_005902.3	425	tCt/tGt																																																																															
PGR	5241	MSKCC	GRCh37	11	100999618	100999618	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762965993		P-0068027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	26	274	0	ENST00000325455.5:c.184C>T	p.Arg62Trp	p.R62W	ENST00000325455	NM_001202474.3	62	Cgg/Tgg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2949714	2949714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	30	229	0	ENST00000396946.4:c.3230G>A	p.Arg1077Gln	p.R1077Q	ENST00000396946	NM_032415.4	1077	cGg/cAg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372070	45372071	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATAT			P-0068027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	37	201	0	ENST00000262160.6:c.1095_1098dup	p.Gly367IlefsTer10	p.G367Ifs*10	ENST00000262160	NM_005901.5	366	-/ATAT																																																																															
ALK	238	MSKCC	GRCh37	2	29445223	29445223	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	41	249	0	ENST00000389048.3:c.3502G>T	p.Ala1168Ser	p.A1168S	ENST00000389048	NM_004304.4	1168	Gcc/Tcc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956777	68956777	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771902674		P-0068027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	24	206	0	ENST00000288368.4:c.895C>T	p.Arg299Trp	p.R299W	ENST00000288368	NM_024870.2	299	Cgg/Tgg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356379	66356379	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	31	257	0	ENST00000273854.3:c.1118T>C	p.Val373Ala	p.V373A	ENST00000273854	NM_004439.5	373	gTc/gCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0068041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	82	562	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0068041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	162	786	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117835	70117836	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0068041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	49	820	0	ENST00000245479.2:c.305dup	p.Pro103AlafsTer149	p.P103Afs*149	ENST00000245479	NM_000346.3	101	-/A																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	140	714	0	ENST00000342988.3:c.1067C>G	p.Pro356Arg	p.P356R	ENST00000342988	NM_005359.5	356	cCt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112164585	112164585	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs398123116		P-0068041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	44	628	0	ENST00000257430.4:c.1659G>A	p.Trp553Ter	p.W553*	ENST00000257430	NM_000038.5	553	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519976		P-0068041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	251	765	0	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411796	63411797	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0068041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	137	822	0	ENST00000330258.3:c.1370dup	p.Ser458GlufsTer2	p.S458Efs*2	ENST00000330258	NM_152424.3	457	cag/caAg																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152861493	152861493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	79	629	0	ENST00000406277.2:c.259C>T	p.Arg87Trp	p.R87W	ENST00000406277	NM_152274.4	87	Cgg/Tgg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646363	3646363	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs551757021		P-0068041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	118	688	0	ENST00000294008.3:c.1715T>A	p.Val572Glu	p.V572E	ENST00000294008	NM_032444.2	572	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0068047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	195	477	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0068047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	84	357	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	181	477	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515306	149515306	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202213873		P-0068047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	173	494	0	ENST00000261799.4:c.176C>T	p.Pro59Leu	p.P59L	ENST00000261799	NM_002609.3	59	cCg/cTg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89478319	89478319	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0068047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	73	350	0	ENST00000336596.2:c.2136+2T>C		p.X712_splice	ENST00000336596	NM_005233.5	712																																																																																
MSH3	4437	MSKCC	GRCh37	5	80037300	80037300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	92	343	0	ENST00000265081.6:c.1586C>T	p.Ser529Leu	p.S529L	ENST00000265081	NM_002439.4	529	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0068056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	167	405	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501195		P-0068056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	195	413	0	ENST00000269305.4:c.313G>A	p.Gly105Ser	p.G105S	ENST00000269305	NM_001126112.2	105	Ggc/Agc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81946227	81946227	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1295648437		P-0068056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	170	332	0	ENST00000359376.3:c.1960G>A	p.Gly654Arg	p.G654R	ENST00000359376	NM_002661.3	654	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112162804	112162804	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0068056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	104	250	0	ENST00000257430.4:c.1412del		p.X471_splice	ENST00000257430	NM_000038.5	471																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153244167	153244167	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	431	370	0	ENST00000281708.4:c.1990G>T	p.Glu664Ter	p.E664*	ENST00000281708	NM_033632.3	664	Gag/Tag																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983140	201983141	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0068056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	181	323	0	ENST00000359651.3:c.990_991dup	p.Arg331ProfsTer4	p.R331Pfs*4	ENST00000359651		330	agc/agCCc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679838	88679838	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs542205293		P-0068056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	122	267	0	ENST00000360948.2:c.625C>A	p.Leu209Ile	p.L209I	ENST00000360948	NM_001012338.2	209	Ctt/Att																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151856004	151856004	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201674711		P-0068056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	172	333	0	ENST00000262189.6:c.11614G>A	p.Glu3872Lys	p.E3872K	ENST00000262189	NM_170606.2	3872	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0068056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	151	255	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175356	112175420	+	frameshift_variant	Frame_Shift_Del	DEL	TTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTATG	TTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTATG	-			P-0068056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	138	313	0	ENST00000257430.4:c.4073_4137del	p.Ala1358AspfsTer6	p.A1358Dfs*6	ENST00000257430	NM_000038.5	1355	tcTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTATGtt/tctt																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264335	30264335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	52	180	0	ENST00000322652.5:c.70G>T	p.Gly24Cys	p.G24C	ENST00000322652	NM_015355.2	24	Ggc/Tgc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100462	8100462	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752779081		P-0068069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	199	724	2	ENST00000346208.3:c.436G>A	p.Ala146Thr	p.A146T	ENST00000346208		146	Gcc/Acc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911632	114911632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	64	432	0	ENST00000543371.1:c.1150C>T	p.Leu384Phe	p.L384F	ENST00000543371	NM_001198531.1	384	Ctt/Ttt																																																																															
NUP93	9688	MSKCC	GRCh37	16	56872967	56872967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	71	411	1	ENST00000308159.5:c.2122G>A	p.Asp708Asn	p.D708N	ENST00000308159	NM_014669.4	708	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0068069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	289	593	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223060	5223060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1379163672		P-0068069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	235	728	0	ENST00000357368.4:c.2743G>A	p.Glu915Lys	p.E915K	ENST00000357368	NM_002850.3	915	Gag/Aag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498457	89498457	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	100	564	0	ENST00000336596.2:c.2429A>G	p.Tyr810Cys	p.Y810C	ENST00000336596	NM_005233.5	810	tAt/tGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0068069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	122	465	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0068262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	289	395	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0068262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	333	544	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0068262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	246	382	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174268	112174268	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0068262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	262	406	0	ENST00000257430.4:c.2977A>T	p.Lys993Ter	p.K993*	ENST00000257430	NM_000038.5	993	Aag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0068262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	159	272	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257037	16257037	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	129	434	0	ENST00000375759.3:c.4302T>G	p.Phe1434Leu	p.F1434L	ENST00000375759	NM_015001.2	1434	ttT/ttG																																																																															
APC	324	MSKCC	GRCh37	5	112175447	112175447	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0068270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	107	434	0	ENST00000257430.4:c.4156A>T	p.Arg1386Ter	p.R1386*	ENST00000257430	NM_000038.5	1386	Aga/Tga																																																																															
SESN3	143686	MSKCC	GRCh37	11	94926629	94926629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	53	297	0	ENST00000536441.1:c.136G>A	p.Glu46Lys	p.E46K	ENST00000536441	NM_144665.3	46	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577520	7577520	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	84	434	0	ENST00000269305.4:c.761T>C	p.Ile254Thr	p.I254T	ENST00000269305	NM_001126112.2	254	aTc/aCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0068270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	65	325	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PARP1	142	MSKCC	GRCh37	1	226555262	226555262	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	64	474	0	ENST00000366794.5:c.2325C>A	p.Tyr775Ter	p.Y775*	ENST00000366794	NM_001618.3	775	taC/taA																																																																															
CALR	811	MSKCC	GRCh37	19	13054566	13054566	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	56	552	0	ENST00000316448.5:c.1093C>T	p.Gln365Ter	p.Q365*	ENST00000316448	NM_004343.3	365	Cag/Tag																																																																															
FLCN	201163	MSKCC	GRCh37	17	17127235	17127235	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0068270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	96	465	0	ENST00000285071.4:c.618+1G>A		p.X206_splice	ENST00000285071	NM_144997.5	206																																																																																
REL	5966	MSKCC	GRCh37	2	61145721	61145721	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766053281		P-0068270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	40	382	0	ENST00000295025.8:c.833G>A	p.Arg278Lys	p.R278K	ENST00000295025	NM_002908.2	278	aGa/aAa																																																																															
AR	367	MSKCC	GRCh37	X	66766351	66766386	+	inframe_deletion	In_Frame_Del	DEL	GGTGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	GGTGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	-			P-0068270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	46	377	2	ENST00000374690.3:c.1365_1400del	p.Gly462_Gly473del	p.G462_G473del	ENST00000374690	NM_000044.3	455	GGTGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0068286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	138	416	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112173830	112173831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0068286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	89	401	0	ENST00000257430.4:c.2544dup	p.Asp849ArgfsTer2	p.D849Rfs*2	ENST00000257430	NM_000038.5	847	gaa/gAaa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87549094	87549094	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	59	345	0	ENST00000277120.3:c.1651C>T	p.Arg551Ter	p.R551*	ENST00000277120		551	Cga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89456460	89456460	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1221318412		P-0068286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	55	342	1	ENST00000336596.2:c.1636G>A	p.Ala546Thr	p.A546T	ENST00000336596	NM_005233.5	546	Gcc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023715	27023716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	72	295	0	ENST00000324856.7:c.827dup	p.Gly277ArgfsTer123	p.G277Rfs*123	ENST00000324856	NM_006015.4	274	atg/atGg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086004	16086008	+	frameshift_variant	Frame_Shift_Del	DEL	CGCAA	CGCAA	-			P-0068286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	30	401	0	ENST00000281043.3:c.1182_1186del	p.Asn395ProfsTer19	p.N395Pfs*19	ENST00000281043	NM_005378.4	394	CGCAAc/c																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120308	70120309	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0068286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	130	401	0	ENST00000245479.2:c.1312_1313dup	p.Gln439HisfsTer32	p.Q439Hfs*32	ENST00000245479	NM_000346.3	437	cgc/cgCTc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871294	35871294	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	91	343	0	ENST00000303115.3:c.516A>T	p.Glu172Asp	p.E172D	ENST00000303115	NM_002185.3	172	gaA/gaT																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271595	26271595	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs930444048		P-0068286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	69	441	0	ENST00000305910.3:c.18G>T	p.Gln6His	p.Q6H	ENST00000305910	NM_003534.2	6	caG/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577569	7577570	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAT			P-0068286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	30	362	0	ENST00000269305.4:c.709_711dup	p.Met237dup	p.M237dup	ENST00000269305	NM_001126112.2	237	-/ATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0068287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	206	516	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112154967	112154968	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0068287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	204	414	0	ENST00000257430.4:c.1239dup	p.Arg414ThrfsTer5	p.R414Tfs*5	ENST00000257430	NM_000038.5	413	ata/atAa																																																																															
CDH1	999	MSKCC	GRCh37	16	68771347	68771348	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs1312011708		P-0068287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	25	216	0	ENST00000261769.5:c.44_46dup	p.Leu15dup	p.L15dup	ENST00000261769	NM_004360.3	15	gcg/gcGCTg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21337317	21337317	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs886041418		P-0068287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	23	397	0	ENST00000215739.8:c.202C>T	p.Arg68Cys	p.R68C	ENST00000215739	NM_006767.3	68	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584726	48584726	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	41	467	0	ENST00000342988.3:c.804G>A	p.Trp268Ter	p.W268*	ENST00000342988	NM_005359.5	268	tgG/tgA																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906516	32906516	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	106	389	0	ENST00000380152.3:c.901G>C	p.Asp301His	p.D301H	ENST00000380152		301	Gat/Cat																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562612	21562612	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1253168141		P-0068287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	51	343	0	ENST00000382592.4:c.1307C>T	p.Thr436Met	p.T436M	ENST00000382592	NM_014572.2	436	aCg/aTg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87549143	87549143	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	156	408	0	ENST00000277120.3:c.1700A>T	p.Lys567Ile	p.K567I	ENST00000277120		567	aAa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0068291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	199	362	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0068291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	203	425	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0068291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	61	403	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	196	481	0	ENST00000257430.4:c.3944C>A	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tAa																																																																															
AR	367	MSKCC	GRCh37	X	66765139	66765139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758522275		P-0068291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			38	231	149	0	ENST00000374690.3:c.151G>A	p.Gly51Ser	p.G51S	ENST00000374690	NM_000044.3	51	Ggc/Agc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244214	153244214	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	244	575	0	ENST00000281708.4:c.1943T>G	p.Leu648Arg	p.L648R	ENST00000281708	NM_033632.3	648	cTa/cGa																																																																															
RP11-211G3.2	0	MSKCC	GRCh37	3	187463174	187463199	+	non_coding_transcript_exon_variant	RNA	DEL	GGCGGCAGCAACAGCAATAATCACCT	GGCGGCAGCAACAGCAATAATCACCT	-			P-0068291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	31	297	0	ENST00000450760.1:n.502_527del		p.*168*	ENST00000450760																																																																																		
PTPRT	11122	MSKCC	GRCh37	20	40727138	40727138	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	383	481	0	ENST00000373198.4:c.3826del	p.Val1276TrpfsTer17	p.V1276Wfs*17	ENST00000373198	NM_133170.3	1276	Gtg/tg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11272526	11272526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			480	70	474	0	ENST00000361445.4:c.3404C>T	p.Ala1135Val	p.A1135V	ENST00000361445	NM_004958.3	1135	gCg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097622	27097622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			575	67	504	0	ENST00000324856.7:c.3216del	p.Lys1072AsnfsTer21	p.K1072Nfs*21	ENST00000324856	NM_006015.4	1071	Aaa/aa																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	63	334	0	ENST00000262741.5:c.883del	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100425	8100425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			662	41	713	1	ENST00000346208.3:c.404del	p.Pro135ArgfsTer60	p.P135Rfs*60	ENST00000346208		133	taC/ta																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			457	81	646	2	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																															
TET1	80312	MSKCC	GRCh37	10	70332376	70332376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			480	28	466	0	ENST00000373644.4:c.281C>T	p.Pro94Leu	p.P94L	ENST00000373644	NM_030625.2	94	cCa/cTa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			582	42	592	0	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307393	118307394	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			240	28	310	1	ENST00000534358.1:c.173dup	p.Ala59GlyfsTer88	p.A59Gfs*88	ENST00000534358	NM_005933.3	56	tcc/tCcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs770248150		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			259	37	361	0	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872461	35872461	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			591	73	647	0	ENST00000216797.5:c.442del	p.Leu148TyrfsTer16	p.L148Yfs*16	ENST00000216797	NM_020529.2	148	Cta/ta																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987109	36987109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			465	37	595	0	ENST00000354822.5:c.580C>T	p.Arg194Cys	p.R194C	ENST00000354822	NM_001079668.2	194	Cgc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42052635	42052635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			620	34	524	1	ENST00000219905.7:c.7306C>T	p.Arg2436Cys	p.R2436C	ENST00000219905	NM_001164273.1	2436	Cgt/Tgt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347929	347929	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141699962		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			630	111	735	0	ENST00000262320.3:c.1577C>T	p.Ala526Val	p.A526V	ENST00000262320	NM_003502.3	526	gCg/gTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273878	10273878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			446	70	508	0	ENST00000330684.3:c.391G>A	p.Ala131Thr	p.A131T	ENST00000330684	NM_001134407.1	131	Gca/Aca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821425	72821425	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769841511		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			545	35	525	0	ENST00000268489.5:c.10750G>A	p.Ala3584Thr	p.A3584T	ENST00000268489	NM_006885.3	3584	Gca/Aca																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944279	81944279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747373917		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			464	75	525	0	ENST00000359376.3:c.1888C>T	p.Arg630Trp	p.R630W	ENST00000359376	NM_002661.3	630	Cgg/Tgg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351215	89351215	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs143817649		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			619	36	529	0	ENST00000301030.4:c.1735T>C	p.Tyr579His	p.Y579H	ENST00000301030	NM_001256183.1	579	Tac/Cac																																																																															
FANCA	2175	MSKCC	GRCh37	16	89862422	89862422	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1467900630		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			424	91	459	0	ENST00000389301.3:c.898G>A	p.Gly300Arg	p.G300R	ENST00000389301	NM_000135.2	300	Gga/Aga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968279	15968279	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			447	67	543	0	ENST00000268712.3:c.5006del	p.Gly1669GlufsTer93	p.G1669Efs*93	ENST00000268712	NM_006311.3	1669	gGa/ga																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59793411	59793411	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375082407		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			128	54	265	0	ENST00000259008.2:c.2393G>A	p.Arg798Gln	p.R798Q	ENST00000259008	NM_032043.2	798	cGa/cAa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			531	204	666	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533732	63533733	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGG	rs570443161		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			707	60	725	0	ENST00000307078.5:c.1419_1421dup	p.His474dup	p.H474dup	ENST00000307078	NM_004655.3	474	cat/caCCAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			522	29	521	1	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
INSR	3643	MSKCC	GRCh37	19	7166282	7166282	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			614	40	538	0	ENST00000302850.5:c.1744G>T	p.Gly582Cys	p.G582C	ENST00000302850	NM_000208.2	582	Ggt/Tgt																																																																															
INSR	3643	MSKCC	GRCh37	19	7174602	7174602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			504	78	493	1	ENST00000302850.5:c.1115G>A	p.Arg372Gln	p.R372Q	ENST00000302850	NM_000208.2	372	cGa/cAa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272244	15272244	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1168179879		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	34	607	0	ENST00000263388.2:c.6195G>C	p.Arg2065Ser	p.R2065S	ENST00000263388	NM_000435.2	2065	agG/agC																																																																															
AXL	558	MSKCC	GRCh37	19	41743932	41743933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778012871		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			588	92	652	0	ENST00000301178.4:c.874dup	p.His292ProfsTer47	p.H292Pfs*47	ENST00000301178	NM_021913.4	289	-/C																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			172	10	265	2	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485820	57485820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			584	80	524	0	ENST00000371085.3:c.1121G>A	p.Arg374His	p.R374H	ENST00000371085	NM_000516.4	374	cGt/cAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			487	71	510	4	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274910	41274910	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			356	119	525	0	ENST00000349496.5:c.1160A>T	p.Asn387Ile	p.N387I	ENST00000349496	NM_001904.3	387	aAt/aTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125832	47125832	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			408	67	397	0	ENST00000409792.3:c.5438del	p.Asn1813IlefsTer25	p.N1813Ifs*25	ENST00000409792	NM_014159.6	1813	aAt/at																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851558	134851558	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs770155473		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			413	55	416	0	ENST00000398015.3:c.964G>A	p.Val322Ile	p.V322I	ENST00000398015	NM_004441.4	322	Gtc/Atc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884864	134884864	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1257672576		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			451	94	448	0	ENST00000398015.3:c.1640C>T	p.Ala547Val	p.A547V	ENST00000398015	NM_004441.4	547	gCg/gTg																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182683417	182683417	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			268	49	361	0	ENST00000292782.4:c.128A>T	p.Asn43Ile	p.N43I	ENST00000292782	NM_020640.2	43	aAt/aTt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957419	1957419	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			441	72	484	0	ENST00000382895.3:c.2523del		p.X841_splice	ENST00000382895	NM_133330.2	841																																																																																
WHSC1	7468	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			609	106	694	7	ENST00000382895.3:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382895	NM_133330.2	1341	Ccc/cc																																																																															
KIT	3815	MSKCC	GRCh37	4	55604659	55604659	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139694927		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			546	56	463	0	ENST00000288135.5:c.2867G>A	p.Arg956Gln	p.R956Q	ENST00000288135	NM_000222.2	956	cGg/cAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510158	187510158	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs932754737		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			633	34	550	0	ENST00000441802.2:c.13355C>T	p.Pro4452Leu	p.P4452L	ENST00000441802	NM_005245.3	4452	cCg/cTg																																																																															
SDHA	6389	MSKCC	GRCh37	5	235282	235282	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			300	69	290	0	ENST00000264932.6:c.1088A>G	p.His363Arg	p.H363R	ENST00000264932	NM_004168.2	363	cAc/cGc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871286	35871286	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145210284		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			320	42	388	0	ENST00000303115.3:c.508C>T	p.Arg170Cys	p.R170C	ENST00000303115	NM_002185.3	170	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112178033	112178033	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs773874693		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			537	81	505	0	ENST00000257430.4:c.6747del	p.Gly2250AlafsTer29	p.G2250Afs*29	ENST00000257430	NM_000038.5	2248	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31322412	31322412	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			511	84	490	0	ENST00000412585.2:c.1043C>T	p.Ala348Val	p.A348V	ENST00000412585	NM_005514.6	348	gCg/gTg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324917	31324917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			494	105	631	0	ENST00000412585.2:c.19del	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000412585	NM_005514.6	7	Cga/ga																																																																															
CCND3	896	MSKCC	GRCh37	6	41903745	41903746	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			587	69	649	0	ENST00000372991.4:c.811dup	p.Arg271ProfsTer53	p.R271Pfs*53	ENST00000372991	NM_001760.3	271	cgg/cCgg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129249	152129249	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771540162		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			466	104	631	0	ENST00000206249.3:c.202G>A	p.Ala68Thr	p.A68T	ENST00000206249	NM_000125.3	68	Gcc/Acc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			482	35	491	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			557	65	585	4	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			579	33	567	0	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211580	98211580	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762040036		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	76	543	0	ENST00000331920.6:c.3575G>A	p.Arg1192His	p.R1192H	ENST00000331920	NM_000264.3	1192	cGc/cAc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300039	137300040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755912201		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			467	43	491	2	ENST00000481739.1:c.331dup	p.Leu111ProfsTer70	p.L111Pfs*70	ENST00000481739	NM_002957.4	108	-/C																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652527	48652527	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			450	76	597	0	ENST00000376670.3:c.1203del	p.Thr402ProfsTer30	p.T402Pfs*30	ENST00000376670	NM_002049.3	400	Ccc/cc																																																																															
AR	367	MSKCC	GRCh37	X	66765242	66765243	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA	rs754644993		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			538	30	581	0	ENST00000374690.3:c.271_273dup	p.Gln91dup	p.Q91dup	ENST00000374690	NM_000044.3	91	agg/agGCAg																																																																															
AR	367	MSKCC	GRCh37	X	66765779	66765779	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			584	97	675	0	ENST00000374690.3:c.796del	p.Asp266IlefsTer30	p.D266Ifs*30	ENST00000374690	NM_000044.3	264	cGg/cg																																																																															
AR	367	MSKCC	GRCh37	X	66943627	66943627	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			448	25	502	0	ENST00000374690.3:c.2707C>T	p.Gln903Ter	p.Q903*	ENST00000374690	NM_000044.3	903	Caa/Taa																																																																															
ATRX	546	MSKCC	GRCh37	X	76776918	76776918	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			281	22	440	0	ENST00000373344.5:c.7034T>C	p.Val2345Ala	p.V2345A	ENST00000373344	NM_000489.3	2345	gTg/gCg																																																																															
ATRX	546	MSKCC	GRCh37	X	76938724	76938724	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			340	43	501	0	ENST00000373344.5:c.2024C>A	p.Ser675Tyr	p.S675Y	ENST00000373344	NM_000489.3	675	tCt/tAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099975	27099975	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			695	47	734	0	ENST00000324856.7:c.3854A>G	p.Tyr1285Cys	p.Y1285C	ENST00000324856	NM_006015.4	1285	tAt/tGt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981801	201981801	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			577	33	617	0	ENST00000359651.3:c.512A>G	p.Asp171Gly	p.D171G	ENST00000359651		171	gAc/gGc																																																																															
RET	5979	MSKCC	GRCh37	10	43600641	43600641	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			584	34	684	0	ENST00000355710.3:c.867G>T	p.Glu289Asp	p.E289D	ENST00000355710	NM_020975.4	289	gaG/gaT																																																																															
APLNR	187	MSKCC	GRCh37	11	57004244	57004244	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs144634263		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			545	102	695	0	ENST00000257254.3:c.235G>A	p.Val79Met	p.V79M	ENST00000257254		79	Gtg/Atg																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205214	61205214	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			418	71	487	0	ENST00000301761.2:c.154T>G	p.Leu52Val	p.L52V	ENST00000301761	NM_017841.2	52	Ttg/Gtg																																																																															
GAB2	9846	MSKCC	GRCh37	11	77937618	77937618	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			387	56	425	0	ENST00000361507.4:c.1100del	p.Gly367AlafsTer60	p.G367Afs*60	ENST00000361507	NM_080491.2	367	gGc/gc																																																																															
PGR	5241	MSKCC	GRCh37	11	100922270	100922270	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			216	18	361	0	ENST00000325455.5:c.2242A>T	p.Ile748Leu	p.I748L	ENST00000325455	NM_001202474.3	748	Ata/Tta																																																																															
ATM	472	MSKCC	GRCh37	11	108164181	108164181	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs781275128		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	20	339	0	ENST00000278616.4:c.4753A>G	p.Arg1585Gly	p.R1585G	ENST00000278616	NM_000051.3	1585	Aga/Gga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437673	49437673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			720	43	686	0	ENST00000301067.7:c.5297A>G	p.Asp1766Gly	p.D1766G	ENST00000301067	NM_003482.3	1766	gAc/gGc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856677	111856677	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			495	35	539	0	ENST00000341259.2:c.728C>A	p.Pro243His	p.P243H	ENST00000341259	NM_005475.2	243	cCc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133209307	133209307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			569	36	647	0	ENST00000320574.5:c.6079A>G	p.Arg2027Gly	p.R2027G	ENST00000320574	NM_006231.2	2027	Agg/Ggg																																																																															
KLF5	688	MSKCC	GRCh37	13	73636038	73636038	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754308838		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	67	476	0	ENST00000377687.4:c.301C>T	p.Pro101Ser	p.P101S	ENST00000377687	NM_001730.3	101	Cct/Tct																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778903	3778903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			501	77	636	0	ENST00000262367.5:c.6145G>A	p.Ala2049Thr	p.A2049T	ENST00000262367	NM_004380.2	2049	Gct/Act																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439959	56439960	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			451	171	548	0	ENST00000407977.2:c.632_633del	p.Val211AspfsTer47	p.V211Dfs*47	ENST00000407977		211	gTG/g																																																																															
YES1	7525	MSKCC	GRCh37	18	739786	739786	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			287	17	318	0	ENST00000314574.4:c.1086del	p.Gly363GlufsTer6	p.G363Efs*6	ENST00000314574	NM_005433.3	362	gaA/ga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285152	15285152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			601	99	640	0	ENST00000263388.2:c.4463G>A	p.Cys1488Tyr	p.C1488Y	ENST00000263388	NM_000435.2	1488	tGc/tAc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30312960	30312960	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			464	72	532	0	ENST00000262643.3:c.763C>T	p.Gln255Ter	p.Q255*	ENST00000262643	NM_001238.2	255	Cag/Tag																																																																															
CIC	23152	MSKCC	GRCh37	19	42798821	42798821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			420	71	542	0	ENST00000575354.2:c.4393C>T	p.Arg1465Cys	p.R1465C	ENST00000575354	NM_015125.3	1465	Cgc/Tgc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423682	47423682	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750559194		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			542	91	540	1	ENST00000404338.3:c.1750C>T	p.Arg584Trp	p.R584W	ENST00000404338	NM_004491.4	584	Cgg/Tgg																																																																															
ALK	238	MSKCC	GRCh37	2	29445446	29445446	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs759177019		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			466	99	539	0	ENST00000389048.3:c.3387G>T	p.Glu1129Asp	p.E1129D	ENST00000389048	NM_004304.4	1129	gaG/gaT																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630515	67630515	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			304	18	427	0	ENST00000272342.5:c.701A>G	p.Asn234Ser	p.N234S	ENST00000272342	NM_019002.3	234	aAt/aGt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251734	212251734	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			595	91	574	0	ENST00000342788.4:c.3325G>T	p.Gly1109Cys	p.G1109C	ENST00000342788	NM_005235.2	1109	Ggc/Tgc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29115469	29115469	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1250779080		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			292	16	288	0	ENST00000328354.6:c.597del	p.Phe199LeufsTer6	p.F199Lfs*6	ENST00000328354	NM_007194.3	199	ttT/tt																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29438490	29438490	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376766629		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			476	76	411	0	ENST00000544604.2:c.434G>A	p.Arg145Gln	p.R145Q	ENST00000544604	NM_001206998.1	145	cGa/cAa																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29438495	29438496	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			498	71	410	0	ENST00000544604.2:c.440dup	p.Gln148ThrfsTer10	p.Q148Tfs*10	ENST00000544604	NM_001206998.1	147	gta/gTta																																																																															
PPARG	5468	MSKCC	GRCh37	3	12421214	12421214	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			485	85	461	0	ENST00000287820.6:c.94G>T	p.Val32Phe	p.V32F	ENST00000287820	NM_015869.4	32	Gtt/Ttt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37035133	37035133	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			526	36	428	0	ENST00000231790.2:c.95T>A	p.Ile32Asn	p.I32N	ENST00000231790	NM_000249.3	32	aTc/aAc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37092115	37092115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			298	126	444	0	ENST00000231790.2:c.2242del	p.Asp748IlefsTer35	p.D748Ifs*35	ENST00000231790	NM_000249.3	748	Gat/at																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119562182	119562182	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			507	33	458	0	ENST00000316626.5:c.1154C>A	p.Pro385His	p.P385H	ENST00000316626		385	cCt/cAt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806174	1806174	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			608	48	672	0	ENST00000260795.2:c.1193T>C	p.Leu398Pro	p.L398P	ENST00000260795		398	cTg/cCg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057325	180057325	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			436	32	570	0	ENST00000261937.6:c.413C>A	p.Pro138Gln	p.P138Q	ENST00000261937	NM_182925.4	138	cCa/cAa																																																																															
CCND3	896	MSKCC	GRCh37	6	41905047	41905047	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149279084		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			598	73	580	0	ENST00000372991.4:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000372991	NM_001760.3	167	cGg/cAg																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790678	89790678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			537	38	562	0	ENST00000336032.3:c.65G>A	p.Gly22Asp	p.G22D	ENST00000336032	NM_006813.2	22	gGc/gAc																																																																															
POT1	25913	MSKCC	GRCh37	7	124532383	124532383	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			262	15	336	0	ENST00000357628.3:c.61A>G	p.Thr21Ala	p.T21A	ENST00000357628	NM_015450.2	21	Aca/Gca																																																																															
EZH2	2146	MSKCC	GRCh37	7	148511107	148511107	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			593	32	451	1	ENST00000320356.2:c.1795T>C	p.Trp599Arg	p.W599R	ENST00000320356	NM_004456.4	599	Tgg/Cgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151841941	151841941	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1221863211		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			588	31	544	0	ENST00000262189.6:c.14200A>G	p.Thr4734Ala	p.T4734A	ENST00000262189	NM_170606.2	4734	Acc/Gcc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152007082	152007082	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			443	25	358	0	ENST00000262189.6:c.818T>C	p.Val273Ala	p.V273A	ENST00000262189	NM_170606.2	273	gTg/gCg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2161821	2161821	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148991905		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			595	86	512	0	ENST00000349721.2:c.4117G>A	p.Ala1373Thr	p.A1373T	ENST00000349721	NM_003070.3	1373	Gct/Act																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250037	110250037	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	22	500	0	ENST00000374672.4:c.638T>C	p.Ile213Thr	p.I213T	ENST00000374672	NM_004235.4	213	aTt/aCt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139418415	139418415	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757497167		P-0068305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			455	64	532	0	ENST00000277541.6:c.157G>A	p.Val53Met	p.V53M	ENST00000277541	NM_017617.3	53	Gtg/Atg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584772	48584773	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0068314-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			385	94	364	0	ENST00000342988.3:c.854dup	p.Asn285LysfsTer23	p.N285Kfs*23	ENST00000342988	NM_005359.5	284	caa/cAaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0068314-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			147	37	238	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971165	21971187	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCAGCAGCTCCGCCACTCGG	GCAGCAGCAGCTCCGCCACTCGG	-			P-0068314-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	186	462	0	ENST00000304494.5:c.171_193del	p.Arg58ProfsTer54	p.R58Pfs*54	ENST00000304494	NM_000077.4	57	gcCCGAGTGGCGGAGCTGCTGCTGCtc/gctc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0068320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			56	216	344	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
AR	367	MSKCC	GRCh37	X	66765149	66765151	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-	rs764402637		P-0068320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	11	233	0	ENST00000374690.3:c.170_172del	p.Leu57del	p.L57del	ENST00000374690	NM_000044.3	54	tTGCtg/ttg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949076	44949076	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	113	335	0	ENST00000377967.4:c.3637C>T	p.Arg1213Ter	p.R1213*	ENST00000377967	NM_021140.2	1213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175606	112175606	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	242	403	0	ENST00000257430.4:c.4316del	p.Pro1439LeufsTer34	p.P1439Lfs*34	ENST00000257430	NM_000038.5	1439	Cct/ct																																																																															
MGA	23269	MSKCC	GRCh37	15	42059447	42059447	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753335816		P-0068320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	127	364	0	ENST00000219905.7:c.9167C>T	p.Ser3056Leu	p.S3056L	ENST00000219905	NM_001164273.1	3056	tCg/tTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212286812	212286812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	75	317	0	ENST00000342788.4:c.2884G>A	p.Asp962Asn	p.D962N	ENST00000342788	NM_005235.2	962	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0068325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	228	370	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214612	5214612	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139132124		P-0068325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	173	336	1	ENST00000357368.4:c.4454C>T	p.Ala1485Val	p.A1485V	ENST00000357368	NM_002850.3	1485	gCg/gTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0068325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	105	300	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
ATM	472	MSKCC	GRCh37	11	108119689	108119689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	76	274	0	ENST00000278616.4:c.1095G>T	p.Glu365Asp	p.E365D	ENST00000278616	NM_000051.3	365	gaG/gaT																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416649	416649	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	164	360	0	ENST00000399788.2:c.3901C>A	p.Gln1301Lys	p.Q1301K	ENST00000399788	NM_001042603.1	1301	Caa/Aaa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39550407	39550407	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773653046		P-0068325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	109	300	0	ENST00000262039.4:c.518G>A	p.Ser173Asn	p.S173N	ENST00000262039	NM_002647.2	173	aGc/aAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98268817	98268817	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	150	325	0	ENST00000331920.6:c.266A>T	p.Lys89Ile	p.K89I	ENST00000331920	NM_000264.3	89	aAa/aTa																																																																															
ATRX	546	MSKCC	GRCh37	X	76939391	76939391	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	96	359	0	ENST00000373344.5:c.1357G>T	p.Glu453Ter	p.E453*	ENST00000373344	NM_000489.3	453	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0068423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	215	418	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0068423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	270	387	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
RET	5979	MSKCC	GRCh37	10	43620387	43620387	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748288493		P-0068423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	180	420	0	ENST00000355710.3:c.2996C>T	p.Ala999Val	p.A999V	ENST00000355710	NM_020975.4	999	gCg/gTg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671731	67671731	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1385636609		P-0068423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	144	519	0	ENST00000264010.4:c.2140G>A	p.Gly714Arg	p.G714R	ENST00000264010	NM_006565.3	714	Gga/Aga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223075	5223075	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1369452734		P-0068423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	201	546	0	ENST00000357368.4:c.2728C>T	p.Arg910Cys	p.R910C	ENST00000357368	NM_002850.3	910	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0068423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	124	279	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604756	48604756	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	234	517	0	ENST00000342988.3:c.1578A>T	p.Glu526Asp	p.E526D	ENST00000342988	NM_005359.5	526	gaA/gaT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992883	72992883	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770677747		P-0068423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	201	435	0	ENST00000268489.5:c.1162G>A	p.Glu388Lys	p.E388K	ENST00000268489	NM_006885.3	388	Gag/Aag																																																																															
CUL3	8452	MSKCC	GRCh37	2	225343032	225343032	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	100	360	1	ENST00000264414.4:c.2060A>G	p.Glu687Gly	p.E687G	ENST00000264414	NM_003590.4	687	gAg/gGg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21346035	21346035	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1342883674		P-0068423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	55	539	0	ENST00000215739.8:c.910G>A	p.Asp304Asn	p.D304N	ENST00000215739	NM_006767.3	304	Gac/Aac																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18277995	18277995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	127	391	0	ENST00000222254.8:c.1615C>T	p.Arg539Cys	p.R539C	ENST00000222254	NM_005027.3	539	Cgc/Tgc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910883	114910883	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0068423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	216	422	0	ENST00000543371.1:c.1001+1G>T		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27099884	27099884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs530093213		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	201	438	0	ENST00000324856.7:c.3763G>A	p.Gly1255Arg	p.G1255R	ENST00000324856	NM_006015.4	1255	Ggg/Agg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729662	162729662	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1484743299		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	196	408	0	ENST00000367921.3:c.748G>A	p.Val250Met	p.V250M	ENST00000367921	NM_006182.2	250	Gtg/Atg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206651144	206651144	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs533634715		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	243	402	1	ENST00000367120.3:c.754C>T	p.Arg252Trp	p.R252W	ENST00000367120	NM_014002.3	252	Cgg/Tgg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649922	88649922	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	117	222	0	ENST00000372037.3:c.176del	p.Leu59Ter	p.L59*	ENST00000372037	NM_004329.2	57	ccT/cc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88681438	88681438	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659155		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	122	213	0	ENST00000372037.3:c.1328G>A	p.Arg443His	p.R443H	ENST00000372037	NM_004329.2	443	cGt/cAt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127670	64127670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	94	365	0	ENST00000334205.4:c.163G>A	p.Gly55Arg	p.G55R	ENST00000334205	NM_003942.2	55	Ggg/Agg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999297	100999297	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368109236		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	158	465	1	ENST00000325455.5:c.505G>A	p.Gly169Arg	p.G169R	ENST00000325455	NM_001202474.3	169	Ggg/Agg																																																																															
ATM	472	MSKCC	GRCh37	11	108137926	108137926	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199875915		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	146	327	3	ENST00000278616.4:c.2495G>A	p.Arg832His	p.R832H	ENST00000278616	NM_000051.3	832	cGt/cAt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427594	427594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756567348		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	149	353	0	ENST00000399788.2:c.2575C>T	p.Arg859Cys	p.R859C	ENST00000399788	NM_001042603.1	859	Cgt/Tgt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	162	323	4	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	60	265	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420657	49420657	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746837652		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	214	421	0	ENST00000301067.7:c.15092G>A	p.Arg5031His	p.R5031H	ENST00000301067	NM_003482.3	5031	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434271	49434271	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	233	435	0	ENST00000301067.7:c.7282del	p.Arg2428GlyfsTer57	p.R2428Gfs*57	ENST00000301067	NM_003482.3	2428	Cgg/gg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	192	442	1	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	217	414	2	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858581	57858581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	276	402	0	ENST00000228682.2:c.319G>A	p.Val107Ile	p.V107I	ENST00000228682	NM_005269.2	107	Gta/Ata																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432009	121432009	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	32	452	1	ENST00000257555.6:c.759del	p.Leu254TrpfsTer88	p.L254Wfs*88	ENST00000257555		252	caG/ca																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	460	436	4	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
POLE	5426	MSKCC	GRCh37	12	133202313	133202313	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756301031		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	209	419	0	ENST00000320574.5:c.6575C>T	p.Ala2192Val	p.A2192V	ENST00000320574	NM_006231.2	2192	gCg/gTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906958	32906958	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80358423		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	399	386	0	ENST00000380152.3:c.1343G>A	p.Arg448His	p.R448H	ENST00000380152		448	cGt/cAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907421	32907421	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs80359307		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	165	306	0	ENST00000380152.3:c.1813del	p.Ile605TyrfsTer9	p.I605Yfs*9	ENST00000380152		602	ggA/gg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346884	73346884	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	62	282	2	ENST00000377767.4:c.1333del	p.Ser445HisfsTer20	p.S445Hfs*20	ENST00000377767	NM_014953.3	445	Tca/ca																																																																															
AKT1	207	MSKCC	GRCh37	14	105242073	105242075	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs768025881		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	153	410	1	ENST00000349310.3:c.349_351del	p.Glu117del	p.E117del	ENST00000349310	NM_001014432.1	117	GAG/-																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226345	2226345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	225	482	0	ENST00000326181.6:c.1958G>A	p.Arg653Gln	p.R653Q	ENST00000326181	NM_032271.2	653	cGg/cAg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782308	56782308	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34670294		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	177	350	1	ENST00000308159.5:c.149G>A	p.Arg50His	p.R50H	ENST00000308159	NM_014669.4	50	cGc/cAc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644874	67644874	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	253	459	0	ENST00000264010.4:c.143del	p.Gly48ValfsTer14	p.G48Vfs*14	ENST00000264010	NM_006565.3	47	Ggg/gg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827763	72827763	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	188	390	0	ENST00000268489.5:c.8818A>G	p.Ser2940Gly	p.S2940G	ENST00000268489	NM_006885.3	2940	Agc/Ggc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993780	72993780	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1314855387		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	205	500	0	ENST00000268489.5:c.265G>A	p.Ala89Thr	p.A89T	ENST00000268489	NM_006885.3	89	Gcc/Acc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81819695	81819695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs537204469		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	211	378	0	ENST00000359376.3:c.101G>A	p.Arg34His	p.R34H	ENST00000359376	NM_002661.3	34	cGc/cAc																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108653	8108653	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749454960		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	226	357	0	ENST00000585124.1:c.742C>T	p.Arg248Cys	p.R248C	ENST00000585124	NM_004217.3	248	Cgc/Tgc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	176	372	9	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
RARA	5914	MSKCC	GRCh37	17	38512402	38512402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	159	330	1	ENST00000254066.5:c.1319del	p.Pro440ArgfsTer203	p.P440Rfs*203	ENST00000254066	NM_000964.3	438	gCc/gc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	497	498	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435317	56435317	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200066146		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	232	439	0	ENST00000407977.2:c.1820C>T	p.Ser607Leu	p.S607L	ENST00000407977		607	tCg/tTg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs771001164		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	195	387	3	ENST00000307078.5:c.1214_1215del	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78897352	78897352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	250	523	0	ENST00000306801.3:c.2687C>T	p.Pro896Leu	p.P896L	ENST00000306801	NM_020761.2	896	cCg/cTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593465	48593465	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs794726995		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	224	332	0	ENST00000342988.3:c.1216G>A	p.Ala406Thr	p.A406T	ENST00000342988	NM_005359.5	406	Gcg/Acg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660045		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	95	357	0	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226490	2226490	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780810017		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	251	457	0	ENST00000398665.3:c.3970G>A	p.Ala1324Thr	p.A1324T	ENST00000398665	NM_032482.2	1324	Gcg/Acg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4110583	4110583	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	124	469	0	ENST00000262948.5:c.374G>C	p.Cys125Ser	p.C125S	ENST00000262948	NM_030662.3	125	tGc/tCc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5218802	5218802	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370343222		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	151	350	0	ENST00000357368.4:c.3931G>A	p.Asp1311Asn	p.D1311N	ENST00000357368	NM_002850.3	1311	Gac/Aac																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18274155	18274155	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148515229		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	223	405	0	ENST00000222254.8:c.1373G>A	p.Arg458His	p.R458H	ENST00000222254	NM_005027.3	458	cGc/cAc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278019	18278019	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762411607		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	183	313	0	ENST00000222254.8:c.1639C>T	p.Arg547Trp	p.R547W	ENST00000222254	NM_005027.3	547	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	177	453	2	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	220	541	3	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906330	50906330	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370734242		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	185	372	0	ENST00000440232.2:c.991C>T	p.Arg331Trp	p.R331W	ENST00000440232	NM_002691.3	331	Cgg/Tgg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	188	429	1	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637247	47637248	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	392	290	0	ENST00000233146.2:c.387_388del	p.Gln130ValfsTer2	p.Q130Vfs*2	ENST00000233146	NM_000251.2	127	aaTCtc/aatc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637495	47637496	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	161	344	0	ENST00000233146.2:c.633dup	p.Lys212GlufsTer20	p.K212Efs*20	ENST00000233146	NM_000251.2	210	atg/atGg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661672	227661672	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772676919		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	200	430	0	ENST00000305123.5:c.1783C>T	p.Arg595Trp	p.R595W	ENST00000305123	NM_005544.2	595	Cgg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730909	40730909	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201064715		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	137	370	0	ENST00000373198.4:c.3626G>A	p.Arg1209Gln	p.R1209Q	ENST00000373198	NM_133170.3	1209	cGg/cAg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485816	57485816	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759578554		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	61	391	1	ENST00000371085.3:c.1117C>T	p.Arg373Cys	p.R373C	ENST00000371085	NM_000516.4	373	Cgc/Tgc																																																																															
ERG	2078	MSKCC	GRCh37	21	39795407	39795407	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371043321		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	215	413	0	ENST00000288319.7:c.313G>A	p.Gly105Ser	p.G105S	ENST00000288319	NM_182918.3	105	Ggc/Agc																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458536	12458536	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs780238349		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	214	376	0	ENST00000287820.6:c.1153C>T	p.Arg385Ter	p.R385*	ENST00000287820	NM_015869.4	385	Cga/Tga																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	222	431	2	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
ATR	545	MSKCC	GRCh37	3	142269072	142269072	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	136	259	0	ENST00000350721.4:c.2878C>T	p.Arg960Ter	p.R960*	ENST00000350721	NM_001184.3	960	Cga/Tga																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185184615	185184615	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs151275315		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	185	315	0	ENST00000265026.3:c.1507C>T	p.Arg503Cys	p.R503C	ENST00000265026	NM_004721.4	503	Cgt/Tgt																																																																															
KIT	3815	MSKCC	GRCh37	4	55569972	55569972	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs386833402		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	124	259	0	ENST00000288135.5:c.839C>T	p.Ala280Val	p.A280V	ENST00000288135	NM_000222.2	280	gCg/gTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106196246	106196246	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs778915279		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	101	426	0	ENST00000380013.4:c.4579C>T	p.Gln1527Ter	p.Q1527*	ENST00000380013	NM_001127208.2	1527	Cag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	117	398	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
APC	324	MSKCC	GRCh37	5	112128144	112128144	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs76685252		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	110	209	0	ENST00000257430.4:c.647G>A	p.Arg216Gln	p.R216Q	ENST00000257430	NM_000038.5	216	cGa/cAa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149495354	149495354	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151236133		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	100	354	0	ENST00000261799.4:c.3293G>A	p.Arg1098Gln	p.R1098Q	ENST00000261799	NM_002609.3	1098	cGg/cAg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047963	180047963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	209	509	0	ENST00000261937.6:c.2212G>A	p.Val738Met	p.V738M	ENST00000261937	NM_182925.4	738	Gtg/Atg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324917	31324917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	167	392	0	ENST00000412585.2:c.19del	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000412585	NM_005514.6	7	Cga/ga																																																																															
ROS1	6098	MSKCC	GRCh37	6	117631343	117631343	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	127	275	0	ENST00000368508.3:c.6335del	p.Asn2112MetfsTer22	p.N2112Mfs*22	ENST00000368508	NM_002944.2	2112	aAt/at																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444276	50444276	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144637662		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	185	425	0	ENST00000331340.3:c.206G>A	p.Arg69His	p.R69H	ENST00000331340	NM_006060.4	69	cGt/cAt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738808	145738808	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367570292		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	299	611	0	ENST00000428558.2:c.2257C>T	p.Arg753Trp	p.R753W	ENST00000428558	NM_004260.3	753	Cgg/Tgg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2115921	2115921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	172	310	0	ENST00000349721.2:c.3556G>A	p.Ala1186Thr	p.A1186T	ENST00000349721	NM_003070.3	1186	Gcg/Acg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8317878	8317878	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151311972		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	38	291	1	ENST00000356435.5:c.5735C>T	p.Thr1912Met	p.T1912M	ENST00000356435		1912	aCg/aTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209457	98209457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753535745		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	188	408	0	ENST00000331920.6:c.4081G>A	p.Val1361Met	p.V1361M	ENST00000331920	NM_000264.3	1361	Gtg/Atg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98224163	98224163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138154222		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	89	312	0	ENST00000331920.6:c.2678G>A	p.Arg893His	p.R893H	ENST00000331920	NM_000264.3	893	cGc/cAc																																																																															
ABL1	25	MSKCC	GRCh37	9	133759812	133759812	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766513552		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	167	357	0	ENST00000318560.5:c.2135G>A	p.Arg712His	p.R712H	ENST00000318560	NM_005157.4	712	cGc/cAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39914723	39914723	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	36	112	0	ENST00000378444.4:c.4639C>T	p.Arg1547Ter	p.R1547*	ENST00000378444	NM_001123385.1	1547	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821616	72821618	+	inframe_deletion	In_Frame_Del	DEL	CCA	CCA	-	rs766266415		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	48	434	0	ENST00000268489.5:c.10557_10559del	p.Gly3527del	p.G3527del	ENST00000268489	NM_006885.3	3519	ggTGGc/ggc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330568	65330568	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200049537		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	208	363	0	ENST00000342505.4:c.1078C>T	p.Arg360Trp	p.R360W	ENST00000342505	NM_002227.2	360	Cgg/Tgg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245784	46245785	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	168	407	0	ENST00000334344.6:c.3880_3881del	p.Leu1294LysfsTer7	p.L1294Kfs*7	ENST00000334344	NM_152641.2	1293	cTT/c																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434757	110434757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	455	385	0	ENST00000375856.3:c.3644C>T	p.Pro1215Leu	p.P1215L	ENST00000375856	NM_003749.2	1215	cCg/cTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434982	110434982	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765638159		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	490	464	0	ENST00000375856.3:c.3419C>T	p.Pro1140Leu	p.P1140L	ENST00000375856	NM_003749.2	1140	cCg/cTg																																																																															
USP8	9101	MSKCC	GRCh37	15	50788157	50788157	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1022495273		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	54	202	0	ENST00000307179.4:c.2771C>T	p.Ala924Val	p.A924V	ENST00000307179		924	gCa/gTa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14014129	14014129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	177	376	0	ENST00000311895.7:c.107C>T	p.Ala36Val	p.A36V	ENST00000311895	NM_005236.2	36	gCc/gTc																																																																															
CDH1	999	MSKCC	GRCh37	16	68863581	68863582	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	241	370	0	ENST00000261769.5:c.2324dup	p.Leu776ProfsTer6	p.L776Pfs*6	ENST00000261769	NM_004360.3	774	agg/aGgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29550485	29550485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	26	244	0	ENST00000358273.4:c.1745G>A	p.Cys582Tyr	p.C582Y	ENST00000358273	NM_001042492.2	582	tGc/tAc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619285	37619285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	239	395	0	ENST00000447079.4:c.961G>A	p.Gly321Arg	p.G321R	ENST00000447079	NM_015083.1	321	Ggg/Agg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881021	37881021	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs968832437		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	268	435	0	ENST00000269571.5:c.2350C>T	p.Arg784Cys	p.R784C	ENST00000269571		784	Cgc/Tgc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532618	63532618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	110	508	0	ENST00000307078.5:c.1961G>A	p.Gly654Asp	p.G654D	ENST00000307078	NM_004655.3	654	gGc/gAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143985	11143985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	233	348	0	ENST00000344626.4:c.3566G>A	p.Arg1189Gln	p.R1189Q	ENST00000344626	NM_003072.3	1189	cGa/cAa																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627337	14627337	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs946484777		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	254	454	0	ENST00000254322.2:c.733A>G	p.Asn245Asp	p.N245D	ENST00000254322	NM_006145.1	245	Aat/Gat																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212341	36212341	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1476875123		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	237	417	0	ENST00000222270.7:c.2092C>T	p.Arg698Cys	p.R698C	ENST00000222270	NM_014727.1	698	Cgc/Tgc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719364	190719364	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	152	358	0	ENST00000441310.2:c.1366A>C	p.Thr456Pro	p.T456P	ENST00000441310	NM_000534.4	456	Act/Cct																																																																															
BARD1	580	MSKCC	GRCh37	2	215646131	215646131	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	48	337	0	ENST00000260947.4:c.467A>C	p.Tyr156Ser	p.Y156S	ENST00000260947	NM_000465.2	156	tAt/tCt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662983	227662983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	201	382	0	ENST00000305123.5:c.472C>T	p.Pro158Ser	p.P158S	ENST00000305123	NM_005544.2	158	Ccc/Tcc																																																																															
SRC	6714	MSKCC	GRCh37	20	36028569	36028569	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1172425959		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	287	369	1	ENST00000358208.4:c.911C>T	p.Thr304Met	p.T304M	ENST00000358208		304	aCg/aTg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445340	29445340	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1048841127		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	230	436	0	ENST00000544604.2:c.1171G>A	p.Gly391Ser	p.G391S	ENST00000544604	NM_001206998.1	391	Ggc/Agc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445643	29445643	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	184	440	0	ENST00000544604.2:c.1477del	p.Arg493GlyfsTer77	p.R493Gfs*77	ENST00000544604	NM_001206998.1	492	Ccc/cc																																																																															
RAC2	5880	MSKCC	GRCh37	22	37628842	37628842	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	161	286	0	ENST00000249071.6:c.224C>T	p.Thr75Met	p.T75M	ENST00000249071	NM_002872.4	75	aCg/aTg																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63973930	63973930	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776062582		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	210	406	0	ENST00000295900.6:c.1291G>A	p.Gly431Arg	p.G431R	ENST00000295900	NM_000333.3	431	Gga/Aga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134881013	134881013	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	92	354	0	ENST00000398015.3:c.1576C>G	p.Leu526Val	p.L526V	ENST00000398015	NM_004441.4	526	Ctg/Gtg																																																																															
KDR	3791	MSKCC	GRCh37	4	55946139	55946139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	165	324	0	ENST00000263923.4:c.4040C>T	p.Ser1347Leu	p.S1347L	ENST00000263923	NM_002253.2	1347	tCg/tTg																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383747	84383747	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	158	391	0	ENST00000321945.7:c.1105C>T	p.Arg369Ter	p.R369*	ENST00000321945	NM_139076.2	369	Cga/Tga																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149452997	149452997	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	190	397	0	ENST00000286301.3:c.949del	p.Glu317ArgfsTer55	p.E317Rfs*55	ENST00000286301	NM_005211.3	317	Gag/ag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670626	30670626	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1271670724		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	195	341	0	ENST00000376406.3:c.5894C>T	p.Pro1965Leu	p.P1965L	ENST00000376406	NM_014641.2	1965	cCg/cTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100056	157100058	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	216	460	0	ENST00000346085.5:c.998_1000del	p.Gly333del	p.G333del	ENST00000346085	NM_020732.3	331	gcAGGa/gca																																																																															
PARK2	5071	MSKCC	GRCh37	6	161970036	161970036	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	120	281	2	ENST00000366898.1:c.934-1G>A		p.X312_splice	ENST00000366898	NM_004562.2	312																																																																																
CARD11	84433	MSKCC	GRCh37	7	2946381	2946381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	162	392	0	ENST00000396946.4:c.3356C>T	p.Thr1119Met	p.T1119M	ENST00000396946	NM_032415.4	1119	aCg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860463	151860463	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs942000976		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	227	417	0	ENST00000262189.6:c.10199G>A	p.Arg3400His	p.R3400H	ENST00000262189	NM_170606.2	3400	cGt/cAt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162829	38162829	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773861449		P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	197	352	0	ENST00000317025.8:c.2377C>T	p.Arg793Cys	p.R793C	ENST00000317025	NM_023034.1	793	Cgc/Tgc																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128347853	128347853	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	88	296	0	ENST00000265960.3:c.652G>T	p.Gly218Ter	p.G218*	ENST00000265960	NM_001006617.1	218	Gga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			804	54	373	2	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092946	27092946	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	104	422	0	ENST00000324856.7:c.2879-2A>G		p.X960_splice	ENST00000324856	NM_006015.4	960																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27101055	27101055	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772939817		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	183	421	0	ENST00000324856.7:c.4337G>A	p.Arg1446Gln	p.R1446Q	ENST00000324856	NM_006015.4	1446	cGa/cAa																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429977	78429978	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1200882279		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	125	388	1	ENST00000370768.2:c.901dup	p.Ile301AsnfsTer4	p.I301Nfs*4	ENST00000370768	NM_003902.3	301	ata/aAta																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	159	423	2	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624305	89624305	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	176	313	0	ENST00000371953.3:c.79T>G	p.Tyr27Asp	p.Y27D	ENST00000371953	NM_000314.4	27	Tat/Gat																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	105	280	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
ATM	472	MSKCC	GRCh37	11	108235935	108235935	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs770641163		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	130	446	0	ENST00000278616.4:c.8977C>T	p.Arg2993Ter	p.R2993*	ENST00000278616	NM_000051.3	2993	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374775	118374775	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	38	495	0	ENST00000534358.1:c.8168T>A	p.Val2723Asp	p.V2723D	ENST00000534358	NM_005933.3	2723	gTt/gAt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	464350	464350	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs975911125		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	36	432	0	ENST00000399788.2:c.844C>T	p.Arg282Trp	p.R282W	ENST00000399788	NM_001042603.1	282	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420090	49420090	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746471452		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	215	482	0	ENST00000301067.7:c.15659G>A	p.Arg5220His	p.R5220H	ENST00000301067	NM_003482.3	5220	cGc/cAc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112915455	112915455	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs121918463		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	106	327	0	ENST00000351677.2:c.854T>C	p.Phe285Ser	p.F285S	ENST00000351677	NM_002834.3	285	tTt/tCt																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112924336	112924336	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507536		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	190	447	0	ENST00000351677.2:c.1282G>A	p.Val428Met	p.V428M	ENST00000351677	NM_002834.3	428	Gtg/Atg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549413	21549413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764574613		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	175	494	0	ENST00000382592.4:c.2863G>A	p.Ala955Thr	p.A955T	ENST00000382592	NM_014572.2	955	Gca/Aca																																																																															
LATS2	26524	MSKCC	GRCh37	13	21555611	21555611	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs573724179		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	122	414	0	ENST00000382592.4:c.2659C>T	p.Arg887Cys	p.R887C	ENST00000382592	NM_014572.2	887	Cgc/Tgc																																																																															
B2M	567	MSKCC	GRCh37	15	45003746	45003748	+	start_lost	Translation_Start_Site	ONP	TGT	TGT	AGA			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	469	401	0	ENST00000558401.1:c.2_4delinsAGA	p.MetSer1_?2	p.MS1_?2	ENST00000558401	NM_004048.2	1	aTGTct/aAGAct																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	200	450	1	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																															
NF1	4763	MSKCC	GRCh37	17	29661949	29661950	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-	rs1375385849		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	130	393	1	ENST00000358273.4:c.5907_5908del	p.Arg1970SerfsTer6	p.R1970Sfs*6	ENST00000358273	NM_001042492.2	1969	cAA/c																																																																															
NF1	4763	MSKCC	GRCh37	17	29679366	29679366	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs866445127		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	193	409	0	ENST00000358273.4:c.7549C>T	p.Arg2517Ter	p.R2517*	ENST00000358273	NM_001042492.2	2517	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	248	623	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40441470	40441470	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780375123		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	93	386	1	ENST00000345506.4:c.41C>T	p.Ala14Val	p.A14V	ENST00000345506	NM_003152.3	14	gCg/gTg																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804188	46804190	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	243	377	0	ENST00000290295.7:c.817_819del	p.Lys273del	p.K273del	ENST00000290295	NM_006361.5	273	AAG/-																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			749	243	577	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	206	372	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
CARM1	10498	MSKCC	GRCh37	19	10982557	10982557	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			901	55	532	0	ENST00000327064.4:c.179T>C	p.Val60Ala	p.V60A	ENST00000327064	NM_199141.1	60	gTg/gCg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46609673	46609673	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	155	462	1	ENST00000263734.3:c.2402del	p.Pro801HisfsTer39	p.P801Hfs*39	ENST00000263734	NM_001430.4	799	ttC/tt																																																																															
CASP8	841	MSKCC	GRCh37	2	202139625	202139626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	144	419	0	ENST00000358485.4:c.790dup	p.Val264GlyfsTer13	p.V264Gfs*13	ENST00000358485	NM_001080125.1	262	-/G																																																																															
ERG	2078	MSKCC	GRCh37	21	39755553	39755554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			706	111	518	1	ENST00000288319.7:c.1211dup	p.Glu405GlyfsTer61	p.E405Gfs*61	ENST00000288319	NM_182918.3	404	ccg/ccCg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524453	44524453	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1354293371		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	139	328	0	ENST00000291552.4:c.104G>A	p.Arg35Gln	p.R35Q	ENST00000291552	NM_006758.2	35	cGg/cAg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	165	438	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
GAB1	2549	MSKCC	GRCh37	4	144359747	144359747	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1458245713		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	29	349	0	ENST00000262994.4:c.1189C>T	p.Arg397Ter	p.R397*	ENST00000262994	NM_002039.3	397	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534385	187534385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778337700		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	167	411	0	ENST00000441802.2:c.9341C>T	p.Thr3114Met	p.T3114M	ENST00000441802	NM_005245.3	3114	aCg/aTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627996	187627996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	171	461	0	ENST00000441802.2:c.2986G>A	p.Val996Met	p.V996M	ENST00000441802	NM_005245.3	996	Gtg/Atg																																																																															
SDHA	6389	MSKCC	GRCh37	5	236696	236696	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143798161		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	90	183	0	ENST00000264932.6:c.1414G>A	p.Glu472Lys	p.E472K	ENST00000264932	NM_004168.2	472	Gaa/Aaa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592087	67592088	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	149	360	0	ENST00000274335.5:c.1907dup	p.Asn636LysfsTer18	p.N636Kfs*18	ENST00000274335		635	gaa/gAaa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131915167	131915167	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	91	318	0	ENST00000265335.6:c.524A>C	p.Lys175Thr	p.K175T	ENST00000265335		175	aAg/aCg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056397	180056397	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368167894		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	135	483	1	ENST00000261937.6:c.847C>T	p.Arg283Cys	p.R283C	ENST00000261937	NM_182925.4	283	Cgc/Tgc																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43749782	43749782	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369593555		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			705	230	475	0	ENST00000523873.1:c.635G>A	p.Arg212His	p.R212H	ENST00000523873		212	cGt/cAt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157505443	157505443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	207	410	0	ENST00000346085.5:c.3428del	p.Lys1143SerfsTer68	p.K1143Sfs*68	ENST00000346085	NM_020732.3	1142	Aaa/aa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508094	106508094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1212203463		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	110	406	0	ENST00000359195.3:c.88G>A	p.Ala30Thr	p.A30T	ENST00000359195	NM_002649.2	30	Gcc/Acc																																																																															
MET	4233	MSKCC	GRCh37	7	116339167	116339167	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs919828654		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	185	369	0	ENST00000397752.3:c.29G>A	p.Gly10Asp	p.G10D	ENST00000397752	NM_000245.2	10	gGc/gAc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458965	120458965	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	221	471	0	ENST00000256646.2:c.6380A>T	p.Lys2127Met	p.K2127M	ENST00000256646	NM_024408.3	2127	aAg/aTg																																																																															
PARP1	142	MSKCC	GRCh37	1	226552831	226552831	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1407829951		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	180	517	0	ENST00000366794.5:c.2530G>A	p.Glu844Lys	p.E844K	ENST00000366794	NM_001618.3	844	Gaa/Aaa																																																																															
FH	2271	MSKCC	GRCh37	1	241676976	241676976	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61753295		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	240	290	0	ENST00000366560.3:c.305C>T	p.Ala102Val	p.A102V	ENST00000366560	NM_000143.3	102	gCg/gTg																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811596	102811596	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	133	419	1	ENST00000307046.8:c.588A>G	p.Ter196TrpextTer12	p.*196Wext*12	ENST00000307046	NM_001111285.1	196	tgA/tgG																																																																															
SLX4	84464	MSKCC	GRCh37	16	3652222	3652222	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1173910365		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	190	428	0	ENST00000294008.3:c.847G>T	p.Ala283Ser	p.A283S	ENST00000294008	NM_032444.2	283	Gca/Tca																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641208	23641208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs925044785		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	182	450	0	ENST00000261584.4:c.2267G>A	p.Cys756Tyr	p.C756Y	ENST00000261584	NM_024675.3	756	tGc/tAc																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544203	86544203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	57	487	0	ENST00000262426.4:c.28C>T	p.Pro10Ser	p.P10S	ENST00000262426	NM_001451.2	10	Cca/Tca																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30310121	30310121	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	30	108	0	ENST00000322652.5:c.1021A>G	p.Lys341Glu	p.K341E	ENST00000322652	NM_015355.2	341	Aag/Gag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533179	63533179	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	152	407	0	ENST00000307078.5:c.1715G>A	p.Gly572Asp	p.G572D	ENST00000307078	NM_004655.3	572	gGc/gAc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2227112	2227112	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1360018849		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	152	393	0	ENST00000398665.3:c.4592G>A	p.Gly1531Asp	p.G1531D	ENST00000398665	NM_032482.2	1531	gGc/gAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272135	15272135	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1335932431		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	135	517	0	ENST00000263388.2:c.6304G>A	p.Val2102Met	p.V2102M	ENST00000263388	NM_000435.2	2102	Gtg/Atg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46574193	46574193	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	143	418	0	ENST00000263734.3:c.208C>A	p.Leu70Ile	p.L70I	ENST00000263734	NM_001430.4	70	Ctc/Atc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47690196	47690203	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTTCAT	ACCTTCAT	-			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	113	399	0	ENST00000233146.2:c.1413_1420del	p.Lys471AsnfsTer2	p.K471Nfs*2	ENST00000233146	NM_000251.2	471	aaACCTTCATtt/aatt																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719802	190719802	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs762582922		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	110	323	0	ENST00000441310.2:c.1804A>G	p.Thr602Ala	p.T602A	ENST00000441310	NM_000534.4	602	Aca/Gca																																																																															
KDR	3791	MSKCC	GRCh37	4	55973991	55973991	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766459956		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	139	437	0	ENST00000263923.4:c.1325C>T	p.Thr442Met	p.T442M	ENST00000263923	NM_002253.2	442	aCg/aTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524135	187524135	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	200	451	0	ENST00000441802.2:c.11404G>T	p.Gly3802Ter	p.G3802*	ENST00000441802	NM_005245.3	3802	Gga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047902	180047902	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	36	555	0	ENST00000261937.6:c.2273A>G	p.Asn758Ser	p.N758S	ENST00000261937	NM_182925.4	758	aAc/aGc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288662	33288662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			830	101	403	1	ENST00000374542.5:c.890C>T	p.Ala297Val	p.A297V	ENST00000374542	NM_001141970.1	297	gCt/gTt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681513	117681513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	85	351	0	ENST00000368508.3:c.3437C>T	p.Thr1146Ile	p.T1146I	ENST00000368508	NM_002944.2	1146	aCa/aTa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202235	138202235	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1400896020		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			715	191	471	1	ENST00000237289.4:c.2152C>T	p.Arg718Trp	p.R718W	ENST00000237289	NM_001270507.1	718	Cgg/Tgg																																																																															
SYK	6850	MSKCC	GRCh37	9	93639989	93639989	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200202947		P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	167	472	1	ENST00000375746.1:c.1318G>A	p.Glu440Lys	p.E440K	ENST00000375746	NM_001174167.1	440	Gag/Aag																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127912113	127912113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	33	395	0	ENST00000373547.4:c.757G>A	p.Val253Met	p.V253M	ENST00000373547	NM_002721.4	253	Gtg/Atg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395054	139395054	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	130	384	0	ENST00000277541.6:c.5884C>A	p.Arg1962Ser	p.R1962S	ENST00000277541	NM_017617.3	1962	Cgc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0068431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	227	493	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522598	157522598	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	184	409	0	ENST00000346085.5:c.4870C>T	p.Arg1624Ter	p.R1624*	ENST00000346085	NM_020732.3	1624	Cga/Tga																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0068431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	227	537	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0068431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	147	335	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175139	112175139	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	125	410	0	ENST00000257430.4:c.3848del	p.Ala1283ValfsTer5	p.A1283Vfs*5	ENST00000257430	NM_000038.5	1283	gCt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0068613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	156	373	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0068613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	51	284	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
KDR	3791	MSKCC	GRCh37	4	55956226	55956226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	53	407	0	ENST00000263923.4:c.3089C>T	p.Ala1030Val	p.A1030V	ENST00000263923	NM_002253.2	1030	gCg/gTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710662	114710663	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0068613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	38	397	0	ENST00000543371.1:c.149dup	p.Asn50LysfsTer2	p.N50Kfs*2	ENST00000543371	NM_001198531.1	49	-/A																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712754	43712754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	184	499	0	ENST00000382044.4:c.4430G>A	p.Gly1477Asp	p.G1477D	ENST00000382044	NM_001141980.1	1477	gGc/gAc																																																																															
GAB1	2549	MSKCC	GRCh37	4	144359555	144359555	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	48	503	0	ENST00000262994.4:c.997A>C	p.Lys333Gln	p.K333Q	ENST00000262994	NM_002039.3	333	Aag/Cag																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982995	201982998	+	missense_variant	Missense_Mutation	ONP	ATCC	ATCC	GACA			P-0068613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	72	497	0	ENST00000359651.3:c.844_847delinsGACA	p.Ile282_Leu283delinsAspIle	p.I282_L283delinsDI	ENST00000359651		282	ATCCtc/GACAtc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0068718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	75	219	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0068718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	78	267	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268138	153268138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1406877044		P-0068718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	127	299	0	ENST00000281708.4:c.670C>T	p.Arg224Ter	p.R224*	ENST00000281708	NM_033632.3	224	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591902	48591902	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519740		P-0068718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	136	350	0	ENST00000342988.3:c.1065C>A	p.Asp355Glu	p.D355E	ENST00000342988	NM_005359.5	355	gaC/gaA																																																																															
PREX2	80243	MSKCC	GRCh37	8	68930087	68930087	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	14	232	0	ENST00000288368.4:c.148T>G	p.Leu50Val	p.L50V	ENST00000288368	NM_024870.2	50	Tta/Gta																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879583	37879583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	143	324	2	ENST00000269571.5:c.1958C>T	p.Ser653Phe	p.S653F	ENST00000269571		653	tCc/tTc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912276	29912276	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs1380293193		P-0068718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	109	387	0	ENST00000376809.5:c.896-1G>T		p.X299_splice	ENST00000376809	NM_002116.7	299																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153332747	153332747	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	112	336	1	ENST00000281708.4:c.209del	p.Asn70MetfsTer18	p.N70Mfs*18	ENST00000281708	NM_033632.3	70	aAt/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0068718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	81	207	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30194846	30194846	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	20	266	0	ENST00000331968.5:c.299A>C	p.Lys100Thr	p.K100T	ENST00000331968	NM_002742.2	100	aAg/aCg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18524205	18524205	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	17	269	0	ENST00000266497.5:c.1717A>C	p.Asn573His	p.N573H	ENST00000266497		573	Aat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578175	7578176	+	splice_donor_variant	Splice_Site	INS	-	-	CCTC			P-0068718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	131	352	0	ENST00000269305.4:c.670_672+1dup		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
B2M	567	MSKCC	GRCh37	15	45007838	45007842	+	frameshift_variant	Frame_Shift_Del	DEL	AGATG	AGATG	-			P-0068718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	96	322	0	ENST00000558401.1:c.287_291del	p.Asp96ValfsTer17	p.D96Vfs*17	ENST00000558401	NM_004048.2	95	aaAGATGag/aaag																																																																															
APC	324	MSKCC	GRCh37	5	112175759	112175760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAAT			P-0068718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	127	363	0	ENST00000257430.4:c.4469_4470insAATA	p.His1490GlnfsTer25	p.H1490Qfs*25	ENST00000257430	NM_000038.5	1490	cat/cAAATat																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730020	41730020	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs777791358		P-0068718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	58	326	0	ENST00000242208.4:c.509A>C	p.Lys170Thr	p.K170T	ENST00000242208	NM_002192.2	170	aAa/aCa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530147	212530147	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	70	354	0	ENST00000342788.4:c.1772A>C	p.Glu591Ala	p.E591A	ENST00000342788	NM_005235.2	591	gAa/gCa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0068731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	117	269	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175621	112175621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	232	335	0	ENST00000257430.4:c.4330C>T	p.Gln1444Ter	p.Q1444*	ENST00000257430	NM_000038.5	1444	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112173995	112173995	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	173	319	0	ENST00000257430.4:c.2704G>T	p.Glu902Ter	p.E902*	ENST00000257430	NM_000038.5	902	Gaa/Taa																																																																															
AR	367	MSKCC	GRCh37	X	66766357	66766392	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	-	rs1477263359		P-0068731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	101	75	1	ENST00000374690.3:c.1385_1420del	p.Gly462_Gly473del	p.G462_G473del	ENST00000374690	NM_000044.3	457	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0068731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	193	266	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298703	15298703	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749628786		P-0068731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	142	310	0	ENST00000263388.2:c.1595G>A	p.Arg532His	p.R532H	ENST00000263388	NM_000435.2	532	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0068758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	440	441	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	158	469	0	ENST00000257430.4:c.4473del	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520328	176520328	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200070761		P-0068758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	96	308	0	ENST00000292408.4:c.1247G>A	p.Arg416Gln	p.R416Q	ENST00000292408	NM_213647.1	416	cGa/cAa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508082	106508082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	131	313	0	ENST00000359195.3:c.76C>T	p.Arg26Cys	p.R26C	ENST00000359195	NM_002649.2	26	Cgc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385239	41385239	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377294483		P-0068758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	496	374	1	ENST00000373198.4:c.722G>A	p.Arg241His	p.R241H	ENST00000373198	NM_133170.3	241	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0068758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	92	240	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233117	46233117	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	119	317	0	ENST00000334344.6:c.1336T>A	p.Leu446Ile	p.L446I	ENST00000334344	NM_152641.2	446	Tta/Ata																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157505569	157505569	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0068758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	36	300	0	ENST00000346085.5:c.3550G>A	p.Ala1184Thr	p.A1184T	ENST00000346085	NM_020732.3	1184	Gct/Act																																																																															
APC	324	MSKCC	GRCh37	5	112174385	112174389	+	frameshift_variant	Frame_Shift_Del	DEL	TCAGA	TCAGA	-			P-0068758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	266	413	0	ENST00000257430.4:c.3095_3099del	p.Ser1032Ter	p.S1032*	ENST00000257430	NM_000038.5	1032	TCAGAt/t																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0068803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	22	340	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0068803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	84	405	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604789	48604789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	141	371	0	ENST00000342988.3:c.1611C>G	p.Asp537Glu	p.D537E	ENST00000342988	NM_005359.5	537	gaC/gaG																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5535014	5535014	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200938803		P-0068803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	112	340	0	ENST00000397747.3:c.325G>A	p.Ala109Thr	p.A109T	ENST00000397747	NM_025239.3	109	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112174745	112174745	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	119	429	0	ENST00000257430.4:c.3454C>T	p.Gln1152Ter	p.Q1152*	ENST00000257430	NM_000038.5	1152	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119926	70119942	+	frameshift_variant	Frame_Shift_Del	DEL	CACGGCCAGGTCACCTA	CACGGCCAGGTCACCTA	-			P-0068803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	123	390	0	ENST00000245479.2:c.933_949del	p.Val313LeufsTer259	p.V313Lfs*259	ENST00000245479	NM_000346.3	310	CACGGCCAGGTCACCTAc/c																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0068803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	82	260	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729577	41729577	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	144	448	0	ENST00000242208.4:c.952G>C	p.Val318Leu	p.V318L	ENST00000242208	NM_002192.2	318	Gtc/Ctc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911540	114911540	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	135	379	0	ENST00000543371.1:c.1058C>G	p.Pro353Arg	p.P353R	ENST00000543371	NM_001198531.1	353	cCt/cGt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0068812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	40	186	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0068812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	80	317	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44527577	44527577	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	34	240	0	ENST00000291552.4:c.28G>T	p.Gly10Cys	p.G10C	ENST00000291552	NM_006758.2	10	Ggc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292415	15292415	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1379963173		P-0068812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	75	278	0	ENST00000263388.2:c.2764G>A	p.Glu922Lys	p.E922K	ENST00000263388	NM_000435.2	922	Gaa/Aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630885	187630885	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	85	278	0	ENST00000441802.2:c.97C>T	p.Gln33Ter	p.Q33*	ENST00000441802	NM_005245.3	33	Cag/Tag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265568	41266590	+	splice_donor_variant,splice_acceptor_variant,frameshift_variant,stop_lost,intron_variant	Splice_Site	DEL	TCAAGGTTTGTGTCATTAAATCTTTAGTTACTGAATTGGGGCTCTGCTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCA	TCAAGGTTTGTGTCATTAAATCTTTAGTTACTGAATTGGGGCTCTGCTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCA	-			P-0068812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	71	175	0	ENST00000349496.5:c.9_387del		p.X3_splice	ENST00000349496	NM_001904.3	3	acTCAAGGTTTGTGTCATTAAATCTTTAGTTACTGAATTGGGGCTCTGCTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCA/ac																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245741	46245742	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0068812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	89	315	0	ENST00000334344.6:c.3835_3836insT	p.Ser1279MetfsTer9	p.S1279Mfs*9	ENST00000334344	NM_152641.2	1279	agc/aTgc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780023	9780023	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	201	483	0	ENST00000377346.4:c.1287G>T	p.Lys429Asn	p.K429N	ENST00000377346	NM_005026.3	429	aaG/aaT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023641	27023642	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	117	441	0	ENST00000324856.7:c.749dup	p.Pro251AlafsTer149	p.P251Afs*149	ENST00000324856	NM_006015.4	249	-/A																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932232	36932232	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1382959301		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	157	560	0	ENST00000361632.4:c.2237C>T	p.Thr746Ile	p.T746I	ENST00000361632		746	aCc/aTc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851391	156851391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	136	512	0	ENST00000524377.1:c.2348C>T	p.Ala783Val	p.A783V	ENST00000524377	NM_002529.3	783	gCc/gTc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332273	70332273	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	167	442	0	ENST00000373644.4:c.184del	p.Thr62GlnfsTer13	p.T62Qfs*13	ENST00000373644	NM_030625.2	60	Aaa/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720712	89720712	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	26	95	0	ENST00000371953.3:c.867del	p.Val290Ter	p.V290*	ENST00000371953	NM_000314.4	288	gAa/ga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	38	133	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	145	383	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	34	275	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	168	525	3	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	96	418	4	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	132	474	3	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240066	41240066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	65	225	0	ENST00000379561.5:c.284C>T	p.Ala95Val	p.A95V	ENST00000379561	NM_002015.3	95	gCg/gTg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609672	81609672	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587778742		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	185	575	0	ENST00000298171.2:c.1270G>A	p.Val424Ile	p.V424I	ENST00000298171	NM_000369.2	424	Gtt/Att																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	153	443	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
USP8	9101	MSKCC	GRCh37	15	50789365	50789365	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752820652		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	46	413	1	ENST00000307179.4:c.2975G>A	p.Arg992Gln	p.R992Q	ENST00000307179		992	cGg/cAg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396233	396234	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769619638		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	134	460	0	ENST00000262320.3:c.792dup	p.Gly265ArgfsTer20	p.G265Rfs*20	ENST00000262320	NM_003502.3	264	-/C																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274123	10274123	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774442834		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	137	497	0	ENST00000330684.3:c.146G>A	p.Arg49His	p.R49H	ENST00000330684	NM_001134407.1	49	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827511	72827511	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	142	457	0	ENST00000268489.5:c.9070del	p.Thr3024GlnfsTer52	p.T3024Qfs*52	ENST00000268489	NM_006885.3	3024	Aca/ca																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15938195	15938195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	147	407	1	ENST00000268712.3:c.7019C>A	p.Pro2340His	p.P2340H	ENST00000268712	NM_006311.3	2340	cCt/cAt																																																																															
RARA	5914	MSKCC	GRCh37	17	38510611	38510611	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	141	429	0	ENST00000254066.5:c.865G>T	p.Gly289Trp	p.G289W	ENST00000254066	NM_000964.3	289	Ggg/Tgg																																																																															
RARA	5914	MSKCC	GRCh37	17	38511656	38511656	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775118101		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	142	450	0	ENST00000254066.5:c.1154G>A	p.Arg385Gln	p.R385Q	ENST00000254066	NM_000964.3	385	cGa/cAa																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	42	425	1	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	321	576	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs758630849		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	23	418	0	ENST00000305921.3:c.1349del	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59926602	59926603	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs587781416		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	90	349	0	ENST00000259008.2:c.394dup	p.Thr132AsnfsTer10	p.T132Nfs*10	ENST00000259008	NM_032043.2	132	acc/aAcc																																																																															
INSR	3643	MSKCC	GRCh37	19	7117173	7117173	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764041031		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	186	480	0	ENST00000302850.5:c.4043C>T	p.Ser1348Leu	p.S1348L	ENST00000302850	NM_000208.2	1348	tCg/tTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7184544	7184544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	148	390	0	ENST00000302850.5:c.757G>A	p.Val253Met	p.V253M	ENST00000302850	NM_000208.2	253	Gtg/Atg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17937659	17937659	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144968714		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	169	483	0	ENST00000458235.1:c.3268G>A	p.Ala1090Thr	p.A1090T	ENST00000458235	NM_000215.3	1090	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211082	36211082	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	151	520	0	ENST00000222270.7:c.837del	p.Arg280GlyfsTer25	p.R280Gfs*25	ENST00000222270	NM_014727.1	278	aCc/ac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	37	474	6	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918125	50918127	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs763850764		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	129	485	0	ENST00000440232.2:c.2446_2448del	p.Ser816del	p.S816del	ENST00000440232	NM_002691.3	814	ttCTCc/ttc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	137	454	1	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25457281	25457281	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	128	439	0	ENST00000264709.3:c.2606G>T	p.Gly869Val	p.G869V	ENST00000264709	NM_175629.2	869	gGt/gTt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39222520	39222520	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	116	350	0	ENST00000402219.2:c.3090del	p.Lys1030AsnfsTer6	p.K1030Nfs*6	ENST00000402219	NM_005633.3	1030	aaA/aa																																																																															
CASP8	841	MSKCC	GRCh37	2	202136346	202136346	+	splice_donor_variant	Splice_Site	SNP	T	T	C	rs1244888701		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	69	339	0	ENST00000358485.4:c.588+2T>C		p.X196_splice	ENST00000358485	NM_001080125.1	196																																																																																
CASP8	841	MSKCC	GRCh37	2	202139625	202139626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	79	412	0	ENST00000358485.4:c.790dup	p.Val264GlyfsTer13	p.V264Gfs*13	ENST00000358485	NM_001080125.1	262	-/G																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403254	213403254	+	frameshift_variant,start_lost,start_retained_variant	Frame_Shift_Del	DEL	T	T	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	113	428	0	ENST00000342788.4:c.1del	p.Met1?	p.M1?	ENST00000342788	NM_005235.2	1	Atg/tg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	167	485	10	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31372633	31372633	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149520896		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	62	418	0	ENST00000328111.2:c.274C>T	p.Arg92Trp	p.R92W	ENST00000328111	NM_006892.3	92	Cgg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100975	41100975	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	126	494	0	ENST00000373198.4:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000373198	NM_133170.3	461	Cga/Tga																																																																															
ERG	2078	MSKCC	GRCh37	21	39755427	39755427	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	62	543	1	ENST00000288319.7:c.1338del	p.Phe446LeufsTer59	p.F446Lfs*59	ENST00000288319	NM_182918.3	446	ttT/tt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524474	44524474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	130	348	0	ENST00000291552.4:c.83G>A	p.Arg28His	p.R28H	ENST00000291552	NM_006758.2	28	cGt/cAt																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655413	45655413	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	43	500	0	ENST00000407780.3:c.439del	p.His147ThrfsTer15	p.H147Tfs*15	ENST00000407780	NM_001283052.1	147	Cac/ac																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21348979	21348979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	67	532	0	ENST00000215739.8:c.1748G>A	p.Cys583Tyr	p.C583Y	ENST00000215739	NM_006767.3	583	tGc/tAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	76	604	0	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940111	49940112	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs760002850		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	168	510	1	ENST00000296474.3:c.931dup	p.Ala311GlyfsTer26	p.A311Gfs*26	ENST00000296474	NM_002447.2	311	gcc/gGcc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52438571	52438571	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374620220		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	166	439	0	ENST00000460680.1:c.1148G>A	p.Arg383His	p.R383H	ENST00000460680	NM_004656.3	383	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	69	381	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	167	553	1	ENST00000382895.3:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382895	NM_133330.2	1341	Ccc/cc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748119	41748121	+	inframe_deletion	In_Frame_Del	DEL	CCG	CCG	-	rs760638643		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	126	360	9	ENST00000226382.2:c.648_650del	p.Gly217del	p.G217del	ENST00000226382	NM_003924.3	216	ggCGGg/ggg																																																																															
REST	5978	MSKCC	GRCh37	4	57796900	57796900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs2228991		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	147	629	0	ENST00000309042.7:c.1876G>A	p.Val626Ile	p.V626I	ENST00000309042	NM_005612.4	626	Gtt/Att																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467589	66467589	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772693559		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	101	467	1	ENST00000273854.3:c.680G>A	p.Arg227His	p.R227H	ENST00000273854	NM_004439.5	227	cGt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509954	187509954	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs993828603		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	55	500	0	ENST00000441802.2:c.13559C>T	p.Pro4520Leu	p.P4520L	ENST00000441802	NM_005245.3	4520	cCg/cTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	156	373	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175069	112175069	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	100	420	0	ENST00000257430.4:c.3778C>T	p.Gln1260Ter	p.Q1260*	ENST00000257430	NM_000038.5	1260	Cag/Tag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043381	180043381	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760077499		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	184	488	1	ENST00000261937.6:c.3205G>A	p.Val1069Ile	p.V1069I	ENST00000261937	NM_182925.4	1069	Gtc/Atc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672067	30672067	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	228	649	0	ENST00000376406.3:c.4893del	p.Lys1632SerfsTer44	p.K1632Sfs*44	ENST00000376406	NM_014641.2	1631	ccC/cc																																																																															
STK19	8859	MSKCC	GRCh37	6	31948457	31948457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1355123936		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	43	206	0	ENST00000375331.2:c.928C>T	p.Arg310Trp	p.R310W	ENST00000375331	NM_004197.1	310	Cgg/Tgg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821048	32821048	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	36	598	3	ENST00000354258.4:c.546del	p.Ser184ProfsTer54	p.S184Pfs*54	ENST00000354258	NM_000593.5	182	ccC/cc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468150	50468150	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	55	459	0	ENST00000331340.3:c.1385A>G	p.Tyr462Cys	p.Y462C	ENST00000331340	NM_006060.4	462	tAc/tGc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	97	393	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	127	414	4	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	103	458	0	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045494	47045494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	97	509	0	ENST00000329236.7:c.2227C>T	p.Arg743Cys	p.R743C	ENST00000329236	NM_001204466.1	743	Cgc/Tgc																																																																															
AR	367	MSKCC	GRCh37	X	66765403	66765403	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1264061748		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	72	523	0	ENST00000374690.3:c.415G>A	p.Val139Met	p.V139M	ENST00000374690	NM_000044.3	139	Gtg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427265	49427266	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC	rs398123707		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	79	629	0	ENST00000301067.7:c.11220_11222dup	p.Gln3745dup	p.Q3745dup	ENST00000301067	NM_003482.3	3745	caa/caGCAa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438317	110438322	+	inframe_deletion	In_Frame_Del	DEL	GTTGTT	GTTGTT	-	rs1269430357		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	62	406	0	ENST00000375856.3:c.79_84del	p.Asn27_Asn28del	p.N27_N28del	ENST00000375856	NM_003749.2	27	AACAAC/-																																																																															
NADK	65220	MSKCC	GRCh37	1	1688546	1688546	+	intron_variant	Intron	DEL	G	G	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	124	417	0	ENST00000341426.5:c.393+74del		p.*131*	ENST00000341426	NM_023018.4																																																																																	
SPEN	23013	MSKCC	GRCh37	1	16262193	16262193	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	113	595	0	ENST00000375759.3:c.9458A>G	p.Gln3153Arg	p.Q3153R	ENST00000375759	NM_015001.2	3153	cAg/cGg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933524	36933524	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	42	619	0	ENST00000361632.4:c.1763A>G	p.His588Arg	p.H588R	ENST00000361632		588	cAt/cGt																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46738142	46738142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	192	393	0	ENST00000371975.4:c.1174C>A	p.Leu392Met	p.L392M	ENST00000371975	NM_003579.3	392	Ctg/Atg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72058635	72058635	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	43	348	0	ENST00000357731.5:c.805C>T	p.Gln269Ter	p.Q269*	ENST00000357731	NM_173808.2	269	Caa/Taa																																																																															
LMO1	4004	MSKCC	GRCh37	11	8248574	8248574	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747347634		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	58	478	0	ENST00000335790.3:c.313C>T	p.Arg105Trp	p.R105W	ENST00000335790	NM_002315.2	105	Cgg/Tgg																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589653	69589653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	144	810	0	ENST00000168712.1:c.200C>T	p.Ala67Val	p.A67V	ENST00000168712	NM_002007.2	67	gCg/gTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941448	71941448	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1279925582		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	167	540	0	ENST00000298229.2:c.1133G>A	p.Gly378Asp	p.G378D	ENST00000298229	NM_001567.3	378	gGt/gAt																																																																															
PAK1	5058	MSKCC	GRCh37	11	77054913	77054913	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	121	421	0	ENST00000356341.3:c.949C>A	p.Leu317Met	p.L317M	ENST00000356341	NM_002576.4	317	Ctg/Atg																																																																															
SESN3	143686	MSKCC	GRCh37	11	94910881	94910881	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	23	328	0	ENST00000536441.1:c.1247+2T>C		p.X416_splice	ENST00000536441	NM_144665.3	416																																																																																
ATM	472	MSKCC	GRCh37	11	108164079	108164079	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	127	337	0	ENST00000278616.4:c.4651G>T	p.Asp1551Tyr	p.D1551Y	ENST00000278616	NM_000051.3	1551	Gat/Tat																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125503072	125503072	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	74	380	0	ENST00000428830.2:c.439T>C	p.Ser147Pro	p.S147P	ENST00000428830	NM_001114121.2	147	Tca/Cca																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495714	56495714	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	145	421	0	ENST00000267101.3:c.3904G>C	p.Ala1302Pro	p.A1302P	ENST00000267101	NM_001982.3	1302	Gcc/Ccc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856017	111856017	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760472328		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	113	509	0	ENST00000341259.2:c.68C>T	p.Pro23Leu	p.P23L	ENST00000341259	NM_005475.2	23	cCg/cTg																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51507971	51507971	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	124	389	1	ENST00000260433.2:c.787del	p.Arg263AspfsTer20	p.R263Dfs*20	ENST00000260433		263	Aga/ga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857274	9857274	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs544975518		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	101	468	0	ENST00000330684.3:c.4127G>A	p.Arg1376His	p.R1376H	ENST00000330684	NM_001134407.1	1376	cGc/cAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346058	89346058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			27	16	61	0	ENST00000301030.4:c.6892C>T	p.Arg2298Cys	p.R2298C	ENST00000301030	NM_001256183.1	2298	Cgt/Tgt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961246	15961246	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	161	456	0	ENST00000268712.3:c.6143T>C	p.Leu2048Pro	p.L2048P	ENST00000268712	NM_006311.3	2048	cTg/cCg																																																																															
NF1	4763	MSKCC	GRCh37	17	29657414	29657414	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	135	364	0	ENST00000358273.4:c.5710A>G	p.Asn1904Asp	p.N1904D	ENST00000358273	NM_001042492.2	1904	Aac/Gac																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33434066	33434066	+	intron_variant	Intron	SNP	G	G	T			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	148	468	0	ENST00000335858.7:c.145-566C>A		p.*49*	ENST00000335858	NM_133629.2																																																																																	
CDK12	51755	MSKCC	GRCh37	17	37618824	37618824	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1452240517		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	187	523	0	ENST00000447079.4:c.500C>T	p.Ala167Val	p.A167V	ENST00000447079	NM_015083.1	167	gCc/gTc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78599564	78599564	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765839062		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	167	436	0	ENST00000306801.3:c.236C>T	p.Thr79Met	p.T79M	ENST00000306801	NM_020761.2	79	aCg/aTg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11019827	11019827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	186	541	0	ENST00000327064.4:c.502C>T	p.Arg168Trp	p.R168W	ENST00000327064	NM_199141.1	168	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11129671	11129671	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	212	456	0	ENST00000344626.4:c.2481del	p.Ser828ProfsTer3	p.S828Pfs*3	ENST00000344626	NM_003072.3	826	gCc/gc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132630	11132630	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	148	484	0	ENST00000344626.4:c.2846T>C	p.Met949Thr	p.M949T	ENST00000344626	NM_003072.3	949	aTg/aCg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272417	15272417	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1425436352		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	197	496	0	ENST00000263388.2:c.6022C>T	p.Pro2008Ser	p.P2008S	ENST00000263388	NM_000435.2	2008	Ccg/Tcg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353979	15353979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	48	149	0	ENST00000263377.2:c.2901G>T	p.Gln967His	p.Q967H	ENST00000263377	NM_058243.2	967	caG/caT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223570	36223571	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	194	659	0	ENST00000222270.7:c.6122_6123del	p.Val2041GlyfsTer18	p.V2041Gfs*18	ENST00000222270	NM_014727.1	2040	acTGtg/actg																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731467	47731468	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	98	461	0	ENST00000449228.1:c.324dup	p.Phe109ValfsTer141	p.F109Vfs*141	ENST00000449228	NM_001127240.2	108	-/G																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082854	16082854	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1251913339		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	98	311	0	ENST00000281043.3:c.668C>T	p.Ala223Val	p.A223V	ENST00000281043	NM_005378.4	223	gCg/gTg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39241068	39241068	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1227177181		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	52	326	0	ENST00000402219.2:c.2003A>G	p.Gln668Arg	p.Q668R	ENST00000402219	NM_005633.3	668	cAa/cGa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010520	48010520	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs374597395		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	90	451	0	ENST00000234420.5:c.148T>C	p.Trp50Arg	p.W50R	ENST00000234420	NM_000179.2	50	Tgg/Cgg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661398	227661398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	147	549	1	ENST00000305123.5:c.2057G>A	p.Ser686Asn	p.S686N	ENST00000305123	NM_005544.2	686	aGc/aAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41400186	41400186	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	79	338	0	ENST00000373198.4:c.573del	p.Ala192HisfsTer12	p.A192Hfs*12	ENST00000373198	NM_133170.3	191	aaA/aa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41818294	41818294	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1253049408		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	212	732	0	ENST00000373198.4:c.80G>A	p.Ser27Asn	p.S27N	ENST00000373198	NM_133170.3	27	aGc/aAc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62321654	62321654	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs745535053		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	36	527	0	ENST00000482936.1:c.2273C>T	p.Ala758Val	p.A758V	ENST00000482936		758	gCg/gTg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326211	62326211	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs781481182		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	151	440	0	ENST00000482936.1:c.3227G>A	p.Cys1076Tyr	p.C1076Y	ENST00000482936		1076	tGt/tAt																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22161992	22161992	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	132	420	0	ENST00000215832.6:c.263A>T	p.Asp88Val	p.D88V	ENST00000215832	NM_002745.4	88	gAc/gTc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445647	29445647	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	127	504	0	ENST00000544604.2:c.1481del	p.Gly494AlafsTer76	p.G494Afs*76	ENST00000544604	NM_001206998.1	493	cGg/cg																																																																															
TP63	8626	MSKCC	GRCh37	3	189349353	189349353	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	133	399	0	ENST00000264731.3:c.49C>A	p.Pro17Thr	p.P17T	ENST00000264731	NM_003722.4	17	Cct/Act																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160673	56160674	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	124	480	0	ENST00000399503.3:c.948_949del	p.Tyr317LeufsTer8	p.Y317Lfs*8	ENST00000399503	NM_005921.1	316	cTG/c																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672504	30672504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			781	58	696	0	ENST00000376406.3:c.4456C>T	p.Pro1486Ser	p.P1486S	ENST00000376406	NM_014641.2	1486	Cct/Tct																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818739	32818741	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	53	398	0	ENST00000354258.4:c.1210_1212del	p.Lys404del	p.K404del	ENST00000354258	NM_000593.5	404	AAG/-																																																																															
PARK2	5071	MSKCC	GRCh37	6	161781122	161781122	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	126	389	1	ENST00000366898.1:c.1283del	p.Asn428MetfsTer7	p.N428Mfs*7	ENST00000366898	NM_004562.2	428	aAt/at																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468125	50468125	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	47	501	0	ENST00000331340.3:c.1360A>G	p.Thr454Ala	p.T454A	ENST00000331340	NM_006060.4	454	Acc/Gcc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878668	151878668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	57	469	0	ENST00000262189.6:c.6277C>T	p.Pro2093Ser	p.P2093S	ENST00000262189	NM_170606.2	2093	Cca/Tca																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205082	38205082	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs748986383		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	83	369	0	ENST00000317025.8:c.608A>G	p.His203Arg	p.H203R	ENST00000317025	NM_023034.1	203	cAt/cGt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981890	70981890	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	150	499	0	ENST00000276594.2:c.206T>C	p.Phe69Ser	p.F69S	ENST00000276594	NM_024504.3	69	tTc/tCc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117878886	117878886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	96	362	0	ENST00000297338.2:c.83C>T	p.Thr28Ile	p.T28I	ENST00000297338	NM_006265.2	28	aCc/aTc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5077566	5077566	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757690445		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	25	298	0	ENST00000381652.3:c.1978G>A	p.Ala660Thr	p.A660T	ENST00000381652	NM_004972.3	660	Gcc/Acc																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128322074	128322074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	24	374	1	ENST00000265960.3:c.686C>A	p.Ala229Asp	p.A229D	ENST00000265960	NM_001006617.1	229	gCc/gAc																																																																															
ABL1	25	MSKCC	GRCh37	9	133760543	133760543	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	39	517	0	ENST00000318560.5:c.2870del	p.Lys957SerfsTer112	p.K957Sfs*112	ENST00000318560	NM_005157.4	956	Aaa/aa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413916	139413916	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1468729123		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	147	432	0	ENST00000277541.6:c.844C>T	p.Arg282Cys	p.R282C	ENST00000277541	NM_017617.3	282	Cgc/Tgc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412089	63412089	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760684276		P-0068825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	74	532	0	ENST00000330258.3:c.1078T>C	p.Ser360Pro	p.S360P	ENST00000330258	NM_152424.3	360	Tcc/Ccc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0068827-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	139	510	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50917107	50917107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068827-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	147	517	0	ENST00000440232.2:c.2359C>T	p.Pro787Ser	p.P787S	ENST00000440232	NM_002691.3	787	Ccg/Tcg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119780	70119781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068827-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	124	440	0	ENST00000245479.2:c.788dup	p.Arg264GlnfsTer32	p.R264Qfs*32	ENST00000245479	NM_000346.3	261	gag/gaGg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100095	157100116	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCGGCGGCAGCAGCAGGA	GGCGGCGGCGGCAGCAGCAGGA	-			P-0068827-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			877	104	648	0	ENST00000346085.5:c.1044_1065del	p.Gly351MetfsTer11	p.G351Mfs*11	ENST00000346085	NM_020732.3	344	gcGGCGGCGGCGGCAGCAGCAGGA/gc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517800	176517800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199792541		P-0068827-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	143	583	0	ENST00000292408.4:c.410C>T	p.Ser137Leu	p.S137L	ENST00000292408	NM_213647.1	137	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0068900-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			164	109	469	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
MET	4233	MSKCC	GRCh37	7	116397532	116397532	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs773826297		P-0068900-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			240	116	315	0	ENST00000397752.3:c.1904A>G	p.Asn635Ser	p.N635S	ENST00000397752	NM_000245.2	635	aAt/aGt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913558	32913559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1265028174		P-0068900-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			139	91	289	0	ENST00000380152.3:c.5073dup	p.Trp1692MetfsTer3	p.W1692Mfs*3	ENST00000380152		1689	gca/gcAa																																																																															
ATM	472	MSKCC	GRCh37	11	108196186	108196186	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs786202583		P-0068900-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			227	96	314	0	ENST00000278616.4:c.6722A>G	p.Asn2241Ser	p.N2241S	ENST00000278616	NM_000051.3	2241	aAc/aGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0068900-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			181	98	351	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097776	27097777	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0068900-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			333	148	537	0	ENST00000324856.7:c.3367dup	p.Ser1123PhefsTer70	p.S1123Ffs*70	ENST00000324856	NM_006015.4	1122	gat/gaTt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976805	2976805	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068900-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			335	122	566	0	ENST00000396946.4:c.1207T>G	p.Tyr403Asp	p.Y403D	ENST00000396946	NM_032415.4	403	Tac/Gac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132428	11132428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068900-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			357	79	538	0	ENST00000344626.4:c.2644G>A	p.Glu882Lys	p.E882K	ENST00000344626	NM_003072.3	882	Gaa/Aaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965332	68965332	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0068900-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			175	63	236	0	ENST00000288368.4:c.944C>A	p.Ala315Asp	p.A315D	ENST00000288368	NM_024870.2	315	gCt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0068963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	193	324	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0068963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	102	291	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175772	112175772	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	69	344	0	ENST00000257430.4:c.4483del	p.Ser1495ValfsTer12	p.S1495Vfs*12	ENST00000257430	NM_000038.5	1494	gAa/ga																																																																															
INSR	3643	MSKCC	GRCh37	19	7184471	7184472	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0068963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	98	284	0	ENST00000302850.5:c.829_830delinsTT	p.Asp277Phe	p.D277F	ENST00000302850	NM_000208.2	277	GAc/TTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	124	329	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	103	576	4	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	152	396	1	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112154	115112154	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	107	581	0	ENST00000257566.3:c.1586del	p.Gly529AlafsTer103	p.G529Afs*103	ENST00000257566	NM_016569.3	529	gGc/gc																																																																															
CIC	23152	MSKCC	GRCh37	19	42799299	42799300	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1158987717		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	60	198	2	ENST00000575354.2:c.4790dup	p.Pro1598ThrfsTer16	p.P1598Tfs*16	ENST00000575354	NM_015125.3	1595	tcc/tCcc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743943	40743943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs763964405		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	61	412	1	ENST00000373198.4:c.3052C>T	p.Arg1018Ter	p.R1018*	ENST00000373198	NM_133170.3	1018	Cga/Tga																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	74	519	1	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789591	3789591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	123	405	0	ENST00000262367.5:c.4268del	p.Pro1423LeufsTer36	p.P1423Lfs*36	ENST00000262367	NM_004380.2	1423	cCt/ct																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	94	371	0	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238958	5238958	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	69	520	0	ENST00000357368.4:c.1821del	p.Val608TrpfsTer30	p.V608Wfs*30	ENST00000357368	NM_002850.3	607	ccC/cc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	151	473	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	98	540	1	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	131	492	5	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	74	528	3	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	381	473	4	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762108866		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	111	526	2	ENST00000268489.5:c.10215dup	p.Gly3406ArgfsTer25	p.G3406Rfs*25	ENST00000268489	NM_006885.3	3405	-/C																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	85	393	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87563405	87563405	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147652140		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	87	501	0	ENST00000277120.3:c.1793G>A	p.Arg598His	p.R598H	ENST00000277120		598	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089705	27089706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1286891446		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	99	544	1	ENST00000324856.7:c.2666dup	p.Met890HisfsTer46	p.M890Hfs*46	ENST00000324856	NM_006015.4	887	-/G																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532709	187532710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	121	447	0	ENST00000441802.2:c.9683dup	p.Val3229CysfsTer3	p.V3229Cfs*3	ENST00000441802	NM_005245.3	3228	cct/ccCt																																																																															
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	120	534	0	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																															
CASP8	841	MSKCC	GRCh37	2	202150022	202150022	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	241	498	0	ENST00000358485.4:c.1463T>C	p.Leu488Pro	p.L488P	ENST00000358485	NM_001080125.1	488	cTg/cCg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	80	360	0	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53243999	53243999	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	93	443	0	ENST00000375401.3:c.994C>T	p.Arg332Ter	p.R332*	ENST00000375401	NM_004187.3	332	Cga/Tga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103754	47103755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC	rs749901643		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	123	461	0	ENST00000409792.3:c.6190_6191dup	p.Asp2064GlufsTer84	p.D2064Efs*84	ENST00000409792	NM_014159.6	2064	gac/gaGAc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164907	36164907	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1039736738		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	101	499	1	ENST00000300305.3:c.968C>T	p.Thr323Met	p.T323M	ENST00000300305		323	aCg/aTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467573	66467573	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	104	453	1	ENST00000273854.3:c.696del	p.Lys232AsnfsTer36	p.K232Nfs*36	ENST00000273854	NM_004439.5	232	aaA/aa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	498235	498235	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	77	356	1	ENST00000399788.2:c.23del	p.Gly8AlafsTer58	p.G8Afs*58	ENST00000399788	NM_001042603.1	8	gGc/gc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492817	56492817	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	301	530	0	ENST00000407977.2:c.122del	p.Ser41Ter	p.S41*	ENST00000407977		41	tCa/ta																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	216	386	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324494	31324494	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs9266161		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	111	655	1	ENST00000412585.2:c.314T>C	p.Leu105Pro	p.L105P	ENST00000412585	NM_005514.6	105	cTg/cCg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	108	564	2	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	260	722	0	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933460	39933463	+	frameshift_variant	Frame_Shift_Del	DEL	CTAA	CTAA	-	rs864309702		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	119	582	0	ENST00000378444.4:c.1136_1139del	p.Val379AlafsTer62	p.V379Afs*62	ENST00000378444	NM_001123385.1	379	gTTAGc/gc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262460	16262465	+	inframe_deletion	In_Frame_Del	DEL	CCCCCA	CCCCCA	-	rs773711901		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	43	301	0	ENST00000375759.3:c.9735_9740del	p.Thr3246_Pro3247del	p.T3246_P3247del	ENST00000375759	NM_015001.2	3242	gCCCCCAcc/gcc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	176	594	2	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151856070	151856070	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	120	460	1	ENST00000262189.6:c.11548C>T	p.Arg3850Ter	p.R3850*	ENST00000262189	NM_170606.2	3850	Cga/Tga																																																																															
CD276	80381	MSKCC	GRCh37	15	73994829	73994829	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751833994		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	38	243	0	ENST00000318443.5:c.313G>A	p.Ala105Thr	p.A105T	ENST00000318443	NM_001024736.1	105	Gca/Aca																																																																															
PGR	5241	MSKCC	GRCh37	11	100998342	100998342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	22	408	0	ENST00000325455.5:c.1460G>A	p.Gly487Asp	p.G487D	ENST00000325455	NM_001202474.3	487	gGc/gAc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123191805	123191805	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	43	311	0	ENST00000218089.9:c.1400del	p.Phe467SerfsTer3	p.F467Sfs*3	ENST00000218089	NM_001042749.1	465	gTt/gt																																																																															
IRF4	3662	MSKCC	GRCh37	6	401582	401582	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	68	584	1	ENST00000380956.4:c.908del	p.Asn303ThrfsTer6	p.N303Tfs*6	ENST00000380956	NM_001195286.1	302	Aaa/aa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524804	187524804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753458608		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	123	570	0	ENST00000441802.2:c.10876G>A	p.Asp3626Asn	p.D3626N	ENST00000441802	NM_005245.3	3626	Gac/Aac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518279	187518279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779582047		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	126	455	0	ENST00000441802.2:c.12415G>A	p.Gly4139Arg	p.G4139R	ENST00000441802	NM_005245.3	4139	Ggg/Agg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742951	17742951	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1332082680		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	54	546	0	ENST00000250003.3:c.859G>A	p.Ala287Thr	p.A287T	ENST00000250003	NM_002478.4	287	Gcc/Acc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2111902	2111902	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397514881		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	118	534	0	ENST00000219476.3:c.1150G>A	p.Val384Ile	p.V384I	ENST00000219476	NM_000548.3	384	Gtc/Atc																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64290033	64290033	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779059610		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	104	428	0	ENST00000370651.3:c.476G>A	p.Arg159His	p.R159H	ENST00000370651	NM_003463.4	159	cGt/cAt																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594882	47594883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs756343868		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	50	584	3	ENST00000395288.2:c.1156dup	p.Glu386GlyfsTer4	p.E386Gfs*4	ENST00000395288	NM_016506.5	386	gag/gGag																																																																															
TET1	80312	MSKCC	GRCh37	10	70446293	70446293	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	117	539	0	ENST00000373644.4:c.5233A>G	p.Thr1745Ala	p.T1745A	ENST00000373644	NM_030625.2	1745	Acg/Gcg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101330	27101331	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	139	581	0	ENST00000324856.7:c.4615dup	p.Ala1539GlyfsTer33	p.A1539Gfs*33	ENST00000324856	NM_006015.4	1538	agg/aGgg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21336680	21336681	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760808069		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	93	551	2	ENST00000215739.8:c.27dup	p.Gln10AlafsTer24	p.Q10Afs*24	ENST00000215739	NM_006767.3	7	acg/acGg																																																																															
HRAS	3265	MSKCC	GRCh37	11	533536	533536	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369106578		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	128	584	0	ENST00000311189.7:c.367C>T	p.Arg123Cys	p.R123C	ENST00000311189		123	Cgc/Tgc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68950455	68950455	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	80	345	0	ENST00000288368.4:c.767C>A	p.Ser256Tyr	p.S256Y	ENST00000288368	NM_024870.2	256	tCt/tAt																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21348523	21348523	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs761550191		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	50	630	0	ENST00000215739.8:c.1580T>C	p.Phe527Ser	p.F527S	ENST00000215739	NM_006767.3	527	tTc/tCc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190732616	190732616	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371745827		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	63	362	0	ENST00000441310.2:c.2434C>T	p.Arg812Cys	p.R812C	ENST00000441310	NM_000534.4	812	Cgt/Tgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133201291	133201291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	168	449	0	ENST00000320574.5:c.6853G>T	p.Gly2285Cys	p.G2285C	ENST00000320574	NM_006231.2	2285	Ggc/Tgc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117665315	117665315	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	78	407	0	ENST00000368508.3:c.4432T>C	p.Tyr1478His	p.Y1478H	ENST00000368508	NM_002944.2	1478	Tat/Cat																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212013	5212013	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	61	502	0	ENST00000357368.4:c.5018del	p.Pro1673LeufsTer40	p.P1673Lfs*40	ENST00000357368	NM_002850.3	1673	cCt/ct																																																																															
MDM2	4193	MSKCC	GRCh37	12	69210721	69210721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	102	326	0	ENST00000462284.1:c.304C>T	p.His102Tyr	p.H102Y	ENST00000462284	NM_002392.5	102	Cac/Tac																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589599	69589599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	110	804	2	ENST00000168712.1:c.254G>A	p.Arg85Gln	p.R85Q	ENST00000168712	NM_002007.2	85	cGg/cAg																																																																															
CTR9	9646	MSKCC	GRCh37	11	10789639	10789639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	167	456	0	ENST00000361367.2:c.1891C>T	p.Arg631Cys	p.R631C	ENST00000361367	NM_014633.3	631	Cgt/Tgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1280406	1280406	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	78	483	0	ENST00000310581.5:c.1817T>G	p.Val606Gly	p.V606G	ENST00000310581	NM_198253.2	606	gTc/gGc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661882	227661882	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	104	494	0	ENST00000305123.5:c.1573A>G	p.Thr525Ala	p.T525A	ENST00000305123	NM_005544.2	525	Act/Gct																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138376556	138376557	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	113	352	0	ENST00000289153.2:c.2917dup	p.Thr973AsnfsTer15	p.T973Nfs*15	ENST00000289153	NM_006219.2	973	aca/aAca																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29439371	29439372	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	117	447	0	ENST00000544604.2:c.586_587del	p.Asn196GlnfsTer19	p.N196Qfs*19	ENST00000544604	NM_001206998.1	196	AAc/c																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228971	36228971	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	90	639	0	ENST00000222270.7:c.7751T>C	p.Ile2584Thr	p.I2584T	ENST00000222270	NM_014727.1	2584	aTc/aCc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243981	46243981	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	151	504	0	ENST00000334344.6:c.2077del	p.His693ThrfsTer8	p.H693Tfs*8	ENST00000334344	NM_152641.2	692	aCc/ac																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38172228	38172228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	44	416	0	ENST00000317025.8:c.2179C>A	p.Leu727Met	p.L727M	ENST00000317025	NM_023034.1	727	Ctg/Atg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279819	29279820	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	28	69	0	ENST00000544604.2:c.70dup	p.Arg24ProfsTer85	p.R24Pfs*85	ENST00000544604	NM_001206998.1	22	cgc/cgCc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374253	138374253	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	102	349	0	ENST00000289153.2:c.3191T>C	p.Val1064Ala	p.V1064A	ENST00000289153	NM_006219.2	1064	gTt/gCt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56488272	56488272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	266	458	0	ENST00000267101.3:c.1791G>T	p.Lys597Asn	p.K597N	ENST00000267101	NM_001982.3	597	aaG/aaT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891606	151891606	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1307980849		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	108	353	0	ENST00000262189.6:c.4426G>A	p.Val1476Ile	p.V1476I	ENST00000262189	NM_170606.2	1476	Gtc/Atc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39744012	39744012	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	133	320	0	ENST00000361337.2:c.1644del	p.Phe548LeufsTer26	p.F548Lfs*26	ENST00000361337	NM_003286.2	547	gTt/gt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851963	63851963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	115	500	0	ENST00000279873.7:c.2741C>A	p.Pro914Gln	p.P914Q	ENST00000279873	NM_032199.2	914	cCg/cAg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816592	32816592	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	127	503	0	ENST00000354258.4:c.1583T>C	p.Val528Ala	p.V528A	ENST00000354258	NM_000593.5	528	gTa/gCa																																																																															
FYN	2534	MSKCC	GRCh37	6	112041055	112041055	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	65	452	0	ENST00000368678.4:c.200T>C	p.Val67Ala	p.V67A	ENST00000368678		67	gTg/gCg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78854264	78854264	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs995035426		P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	48	370	0	ENST00000306801.3:c.1559C>T	p.Ser520Leu	p.S520L	ENST00000306801	NM_020761.2	520	tCg/tTg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94212860	94212860	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	59	385	0	ENST00000323929.3:c.382A>G	p.Asn128Asp	p.N128D	ENST00000323929	NM_005591.3	128	Aat/Gat																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348755	11348755	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	71	476	1	ENST00000332029.2:c.581T>C	p.Ile194Thr	p.I194T	ENST00000332029	NM_003745.1	194	aTc/aCc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244385	46244386	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	302	517	0	ENST00000334344.6:c.2481dup	p.Pro828ThrfsTer13	p.P828Tfs*13	ENST00000334344	NM_152641.2	827	caa/cAaa																																																																															
ABL1	25	MSKCC	GRCh37	9	133730343	133730343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	101	410	0	ENST00000318560.5:c.409G>A	p.Ala137Thr	p.A137T	ENST00000318560	NM_005157.4	137	Gct/Act																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552927	106552927	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776111636		P-0069000-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			339	28	578	0	ENST00000369096.4:c.892G>A	p.Val298Ile	p.V298I	ENST00000369096	NM_001198.3	298	Gtt/Att																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115280648	115280648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069000-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	75	375	0	ENST00000438362.2:c.383C>T	p.Pro128Leu	p.P128L	ENST00000438362	NM_001242891.1	128	cCc/cTc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175788	24175788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069000-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	48	503	0	ENST00000263121.7:c.1016C>T	p.Ala339Val	p.A339V	ENST00000263121	NM_003073.3	339	gCc/gTc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185161313	185161313	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069000-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			231	55	371	0	ENST00000265026.3:c.740C>A	p.Ala247Asp	p.A247D	ENST00000265026	NM_004721.4	247	gCt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057520007		P-0069008-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			596	131	743	0	ENST00000269305.4:c.614A>T	p.Tyr205Phe	p.Y205F	ENST00000269305	NM_001126112.2	205	tAt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0069008-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			594	138	513	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0069008-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			522	28	649	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0069013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			149	2	0	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0069013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			109	72	366	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0069013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			123	12	372	1	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987244	2987244	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			101	13	277	0	ENST00000396946.4:c.185A>G	p.Asn62Ser	p.N62S	ENST00000396946	NM_032415.4	62	aAt/aGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685312	89685329	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTGTAAGTATGTTTTCT	TCTGTAAGTATGTTTTCT	GA			P-0069013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			46	17	71	1	ENST00000371953.3:c.207_209+15delinsGA		p.X69_splice	ENST00000371953	NM_000314.4	69																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0069025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	129	442	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0069025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	164	652	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123200113	123200113	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0069025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	48	386	0	ENST00000218089.9:c.2184+1G>T		p.X728_splice	ENST00000218089	NM_001042749.1	728																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs80338963		P-0069033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	37	523	2	ENST00000342988.3:c.1081C>A	p.Arg361Ser	p.R361S	ENST00000342988	NM_005359.5	361	Cgc/Agc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867145	45867145	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs530045760		P-0069033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	46	552	0	ENST00000391945.4:c.974C>T	p.Thr325Met	p.T325M	ENST00000391945	NM_000400.3	325	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587782272		P-0069033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	132	362	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66201692	66201692	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753118521		P-0069033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	55	440	0	ENST00000273854.3:c.2810G>A	p.Arg937His	p.R937H	ENST00000273854	NM_004439.5	937	cGt/cAt																																																																															
APLNR	187	MSKCC	GRCh37	11	57004279	57004279	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	A	A	G	rs753248942		P-0069033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			725	54	568	0	ENST00000257254.3:c.200T>C	p.Phe67Ser	p.F67S	ENST00000257254		67	tTc/tCc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748303	41748303	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	89	444	0	ENST00000226382.2:c.466C>A	p.Gln156Lys	p.Q156K	ENST00000226382	NM_003924.3	156	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0069043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	22	394	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0069043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	17	311	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249440	153249440	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	27	383	0	ENST00000281708.4:c.1338G>T	p.Trp446Cys	p.W446C	ENST00000281708	NM_033632.3	446	tgG/tgT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928067	178928067	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	20	333	0	ENST00000263967.3:c.1345C>A	p.Pro449Thr	p.P449T	ENST00000263967	NM_006218.2	449	Cct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913527		P-0069043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	23	333	0	ENST00000256078.4:c.436G>C	p.Ala146Pro	p.A146P	ENST00000256078	NM_033360.2	146	Gca/Cca																																																																															
APC	324	MSKCC	GRCh37	5	112175568	112175568	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	23	506	0	ENST00000257430.4:c.4277del	p.Ser1426ThrfsTer47	p.S1426Tfs*47	ENST00000257430	NM_000038.5	1426	aGc/ac																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0069047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	15	397	0				ENST00000310581	NM_198253.2																																																																																	
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0069047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	52	468	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0069047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	38	312	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481627	56481627	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1429784531		P-0069047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	49	513	1	ENST00000267101.3:c.662C>T	p.Pro221Leu	p.P221L	ENST00000267101	NM_001982.3	221	cCc/cTc																																																																															
MGA	23269	MSKCC	GRCh37	15	42021428	42021428	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	10	389	0	ENST00000219905.7:c.3724C>T	p.Arg1242Ter	p.R1242*	ENST00000219905	NM_001164273.1	1242	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140481403	140481403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913357		P-0069047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	30	268	0	ENST00000288602.6:c.1405G>A	p.Gly469Arg	p.G469R	ENST00000288602	NM_004333.4	469	Gga/Aga																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727429	66727429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	47	353	0	ENST00000307102.5:c.145C>T	p.Arg49Cys	p.R49C	ENST00000307102	NM_002755.3	49	Cgc/Tgc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37863341	37863341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	50	432	0	ENST00000269571.5:c.172G>A	p.Gly58Arg	p.G58R	ENST00000269571		58	Gga/Aga																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88676897	88676897	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782682		P-0069047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	19	230	0	ENST00000372037.3:c.682C>T	p.Arg228Ter	p.R228*	ENST00000372037	NM_004329.2	228	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118352601	118352602	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0069047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	36	472	0	ENST00000534358.1:c.3808_3809del	p.Lys1270GlufsTer2	p.K1270Efs*2	ENST00000534358	NM_005933.3	1269	gAA/g																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686347	30686354	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGCAAC	TGAGCAAC	-			P-0069047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			716	50	489	0	ENST00000359013.4:c.280_287del	p.Ser94GlnfsTer7	p.S94Qfs*7	ENST00000359013	NM_001024847.2	93	aTGAGCAAC/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs483352695		P-0069048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	106	425	1	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0069048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	43	365	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780675	9780675	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	90	481	0	ENST00000377346.4:c.1477G>T	p.Glu493Ter	p.E493*	ENST00000377346	NM_005026.3	493	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112173567	112173567	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	56	500	0	ENST00000257430.4:c.2278del	p.Leu760Ter	p.L760*	ENST00000257430	NM_000038.5	759	gCc/gc																																																																															
ATM	472	MSKCC	GRCh37	11	108163479	108163479	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs780603110		P-0069048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	61	383	0	ENST00000278616.4:c.4570C>G	p.Leu1524Val	p.L1524V	ENST00000278616	NM_000051.3	1524	Ctt/Gtt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0069049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	202	409	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729394	41729394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	128	487	0	ENST00000242208.4:c.1135C>T	p.Arg379Trp	p.R379W	ENST00000242208	NM_002192.2	379	Cgg/Tgg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120479	70120480	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0069049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	87	536	0	ENST00000245479.2:c.1486dup	p.Gln496ProfsTer82	p.Q496Pfs*82	ENST00000245479	NM_000346.3	494	agc/agCc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939260	71939260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	85	546	0	ENST00000298229.2:c.209G>A	p.Arg70His	p.R70H	ENST00000298229	NM_001567.3	70	cGc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70348536	70348536	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387907360		P-0069049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	111	255	0	ENST00000374080.3:c.3443G>A	p.Arg1148His	p.R1148H	ENST00000374080		1148	cGc/cAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946495	71946495	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs747360226		P-0069049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	75	487	0	ENST00000298229.2:c.2659G>A	p.Glu887Lys	p.E887K	ENST00000298229	NM_001567.3	887	Gag/Aag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298024	15298024	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769773673		P-0069049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	65	605	1	ENST00000263388.2:c.1732C>T	p.Arg578Cys	p.R578C	ENST00000263388	NM_000435.2	578	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	55	310	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230468760	230468760	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs889200747		P-0069049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	77	548	0	ENST00000525115.1:c.896C>T	p.Ala299Val	p.A299V	ENST00000525115		299	gCg/gTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250992	10250992	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764541314		P-0069049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	99	464	0	ENST00000340748.4:c.3488C>T	p.Thr1163Met	p.T1163M	ENST00000340748		1163	aCg/aTg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534371	63534371	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	105	628	0	ENST00000307078.5:c.1150G>T	p.Glu384Ter	p.E384*	ENST00000307078	NM_004655.3	384	Gag/Tag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033161	69033161	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	86	364	0	ENST00000288368.4:c.3601C>A	p.Gln1201Lys	p.Q1201K	ENST00000288368	NM_024870.2	1201	Caa/Aaa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532511	63532512	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GGTCA			P-0069049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	83	527	0	ENST00000307078.5:c.2063_2067dup	p.Pro690Ter	p.P690*	ENST00000307078	NM_004655.3	689	-/TGACC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0069079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	185	440	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519946		P-0069079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	170	440	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0069079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	53	298	0				ENST00000310581	NM_198253.2																																																																																	
RRAS	6237	MSKCC	GRCh37	19	50143288	50143288	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1245401713		P-0069079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	59	306	1	ENST00000246792.3:c.68A>G	p.Asp23Gly	p.D23G	ENST00000246792	NM_006270.3	23	gAc/gGc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266053	41266217	+	inframe_deletion	In_Frame_Del	DEL	ACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTC	ACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTC	-			P-0069079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	230	362	0	ENST00000349496.5:c.51_215del	p.Asp17_Gln72delinsGlu	p.D17_Q72delinsE	ENST00000349496	NM_001904.3	17	gACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCag/gag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55146628	55146628	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs778762046		P-0069079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	91	307	0	ENST00000257290.5:c.2302T>C	p.Tyr768His	p.Y768H	ENST00000257290	NM_006206.4	768	Tat/Cat																																																																															
POT1	25913	MSKCC	GRCh37	7	124503486	124503486	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	133	337	0	ENST00000357628.3:c.464A>T	p.Asp155Val	p.D155V	ENST00000357628	NM_015450.2	155	gAt/gTt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134644703	134644703	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs536029159		P-0069081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	73	423	0	ENST00000398015.3:c.104C>T	p.Thr35Met	p.T35M	ENST00000398015	NM_004441.4	35	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175301	112175302	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0069081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	300	593	0	ENST00000257430.4:c.4010_4011del	p.Leu1337ProfsTer4	p.L1337Pfs*4	ENST00000257430	NM_000038.5	1337	cTG/c																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912198	114912198	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0069081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	122	392	0	ENST00000543371.1:c.1268A>G	p.Tyr423Cys	p.Y423C	ENST00000543371	NM_001198531.1	423	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0069081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	246	387	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17952547	17952547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	228	576	0	ENST00000458235.1:c.886C>T	p.Pro296Ser	p.P296S	ENST00000458235	NM_000215.3	296	Cca/Tca																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119717	17119717	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	116	552	0	ENST00000285071.4:c.1277del	p.Ile426ThrfsTer42	p.I426Tfs*42	ENST00000285071	NM_144997.5	426	aTc/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0069102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	148	397	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	123	411	0	ENST00000257430.4:c.3964del	p.Glu1322LysfsTer93	p.E1322Kfs*93	ENST00000257430	NM_000038.5	1322	Gaa/aa																																																																															
CDH1	999	MSKCC	GRCh37	16	68853187	68853187	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373605261		P-0069102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	153	361	1	ENST00000261769.5:c.1570C>T	p.Arg524Trp	p.R524W	ENST00000261769	NM_004360.3	524	Cgg/Tgg																																																																															
MTAP	4507	MSKCC	GRCh37	9	21818197	21818197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	56	301	0	ENST00000380172.4:c.343G>A	p.Asp115Asn	p.D115N	ENST00000380172	NM_002451.3	115	Gac/Aac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40738971	40738971	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0069102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	42	273	0	ENST00000373198.4:c.3311+2T>C		p.X1104_splice	ENST00000373198	NM_133170.3	1104																																																																																
JAK3	3718	MSKCC	GRCh37	19	17953123	17953123	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0069102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	132	285	0	ENST00000458235.1:c.861+2T>A		p.X287_splice	ENST00000458235	NM_000215.3	287																																																																																
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660548		P-0069115-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	31	472	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112175504	112175510	+	frameshift_variant	Frame_Shift_Del	DEL	GTTCAGA	GTTCAGA	-			P-0069115-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	16	422	0	ENST00000257430.4:c.4215_4221del	p.Gln1406AsnfsTer7	p.Q1406Nfs*7	ENST00000257430	NM_000038.5	1405	GTTCAGAgt/gt																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0069135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	314	334	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213872	66213872	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772452750		P-0069135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	109	317	0	ENST00000273854.3:c.2558G>A	p.Arg853Gln	p.R853Q	ENST00000273854	NM_004439.5	853	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs879253942		P-0069135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	354	353	0	ENST00000269305.4:c.794T>C	p.Leu265Pro	p.L265P	ENST00000269305	NM_001126112.2	265	cTg/cCg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843614	156843614	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs797045060		P-0069135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	185	495	0	ENST00000524377.1:c.1040G>A	p.Arg347His	p.R347H	ENST00000524377	NM_002529.3	347	cGc/cAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812317	212812317	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs143662416		P-0069135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	100	354	0	ENST00000342788.4:c.259G>T	p.Val87Leu	p.V87L	ENST00000342788	NM_005235.2	87	Gtg/Ttg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141561522	141561522	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764026573		P-0069135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			815	349	381	0	ENST00000220592.5:c.1283C>T	p.Ala428Val	p.A428V	ENST00000220592	NM_012154.3	428	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0069135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	195	222	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957769	1957769	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	195	360	0	ENST00000382895.3:c.2735A>G	p.Lys912Arg	p.K912R	ENST00000382895	NM_133330.2	912	aAg/aGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0069138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	441	358	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0069138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	209	312	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0069138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	194	330	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910883	114910883	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1477809102		P-0069138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	236	296	0	ENST00000543371.1:c.1001+1G>A		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																																
HIST1H3A	8350	MSKCC	GRCh37	6	26020758	26020758	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			709	45	313	0	ENST00000357647.3:c.41G>C	p.Gly14Ala	p.G14A	ENST00000357647	NM_003529.2	14	gGc/gCc																																																																															
NBN	4683	MSKCC	GRCh37	8	90970996	90970996	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	98	280	0	ENST00000265433.3:c.1081A>G	p.Thr361Ala	p.T361A	ENST00000265433	NM_002485.4	361	Aca/Gca																																																																															
RAF1	5894	MSKCC	GRCh37	3	12632469	12632469	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	93	327	0	ENST00000251849.4:c.1198A>C	p.Thr400Pro	p.T400P	ENST00000251849	NM_002880.3	400	Aca/Cca																																																																															
MTOR	2475	MSKCC	GRCh37	1	11184589	11184589	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	46	296	0	ENST00000361445.4:c.6628G>C	p.Ala2210Pro	p.A2210P	ENST00000361445	NM_004958.3	2210	Gcc/Ccc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942168	71942168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	67	443	0	ENST00000298229.2:c.1432G>A	p.Asp478Asn	p.D478N	ENST00000298229	NM_001567.3	478	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	57	202	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001366	29001366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779189056		P-0069202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	79	352	0	ENST00000282397.4:c.1366G>A	p.Ala456Thr	p.A456T	ENST00000282397	NM_002019.4	456	Gca/Aca																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919021	50919021	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060501811		P-0069202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	50	412	0	ENST00000440232.2:c.2758G>A	p.Asp920Asn	p.D920N	ENST00000440232	NM_002691.3	920	Gac/Aac																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0069202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	69	373	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0069202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	167	353	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468397	89468398	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1467832547		P-0069202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	41	252	0	ENST00000336596.2:c.1938dup	p.Glu647ArgfsTer7	p.E647Rfs*7	ENST00000336596	NM_005233.5	644	tca/tcAa																																																																															
TP63	8626	MSKCC	GRCh37	3	189587133	189587133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	91	261	0	ENST00000264731.3:c.1150G>A	p.Gly384Ser	p.G384S	ENST00000264731	NM_003722.4	384	Ggt/Agt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467590	66467590	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746706656		P-0069202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	61	342	0	ENST00000273854.3:c.679C>T	p.Arg227Cys	p.R227C	ENST00000273854	NM_004439.5	227	Cgt/Tgt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2983862	2983862	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1399673665		P-0069202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	70	310	0	ENST00000396946.4:c.668G>A	p.Arg223Gln	p.R223Q	ENST00000396946	NM_032415.4	223	cGa/cAa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231428	98231428	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060502266		P-0069202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	77	402	0	ENST00000331920.6:c.1855G>A	p.Val619Ile	p.V619I	ENST00000331920	NM_000264.3	619	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0069247-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	182	360	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175735	112175750	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCCAGATGCTGATA	CTTCCAGATGCTGATA	-			P-0069247-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	214	318	0	ENST00000257430.4:c.4447_4462del	p.Pro1483TyrfsTer19	p.P1483Yfs*19	ENST00000257430	NM_000038.5	1482	CTTCCAGATGCTGATAct/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0069248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	18	382	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	152	386	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514495		P-0069248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	265	415	0	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	36	305	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	100	319	0	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa																																																																															
KIT	3815	MSKCC	GRCh37	4	55604659	55604659	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139694927		P-0069248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	26	292	0	ENST00000288135.5:c.2867G>A	p.Arg956Gln	p.R956Q	ENST00000288135	NM_000222.2	956	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112174110	112174110	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	97	340	0	ENST00000257430.4:c.2819C>A	p.Ser940Ter	p.S940*	ENST00000257430	NM_000038.5	940	tCg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0069248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	85	199	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141567204	141567205	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0069248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	80	337	0	ENST00000220592.5:c.1009_1010del	p.Thr337LeufsTer8	p.T337Lfs*8	ENST00000220592	NM_012154.3	337	ACc/c																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898356	63898356	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs966759720		P-0069248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	92	190	0	ENST00000295900.6:c.82G>T	p.Ala28Ser	p.A28S	ENST00000295900	NM_000333.3	28	Gcc/Tcc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992525	72992525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	85	383	0	ENST00000268489.5:c.1520C>T	p.Pro507Leu	p.P507L	ENST00000268489	NM_006885.3	507	cCc/cTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0069250-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	56	108	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069250-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	176	348	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575106	48575106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069250-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	101	266	0	ENST00000342988.3:c.300G>T	p.Arg100Ser	p.R100S	ENST00000342988	NM_005359.5	100	agG/agT																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805537	32805539	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0069250-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	181	397	0	ENST00000374899.4:c.472_474del	p.Phe158del	p.F158del	ENST00000374899	NM_018833.2	158	TTC/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069250-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	74	181	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411719	63411719	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069250-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	163	381	0	ENST00000330258.3:c.1448C>A	p.Ser483Ter	p.S483*	ENST00000330258	NM_152424.3	483	tCa/tAa																																																																															
NUF2	83540	MSKCC	GRCh37	1	163313583	163313583	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069250-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	95	185	0	ENST00000271452.3:c.730A>C	p.Ile244Leu	p.I244L	ENST00000271452	NM_145697.2	244	Att/Ctt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5078340	5078340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069250-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	87	227	0	ENST00000381652.3:c.2027C>A	p.Ala676Asp	p.A676D	ENST00000381652	NM_004972.3	676	gCc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112173497	112173497	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0069250-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	130	277	0	ENST00000257430.4:c.2206A>T	p.Lys736Ter	p.K736*	ENST00000257430	NM_000038.5	736	Aag/Tag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0069273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	83	248	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625218	69625218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	67	293	0	ENST00000334134.2:c.575G>A	p.Arg192Gln	p.R192Q	ENST00000334134	NM_005247.2	192	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0069273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	76	294	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212230	5212230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367918810		P-0069273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	42	331	0	ENST00000357368.4:c.4801G>A	p.Val1601Ile	p.V1601I	ENST00000357368	NM_002850.3	1601	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112175038	112175038	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	60	292	0	ENST00000257430.4:c.3747C>A	p.Cys1249Ter	p.C1249*	ENST00000257430	NM_000038.5	1249	tgC/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	185	385	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0069275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	205	303	0	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
APC	324	MSKCC	GRCh37	5	112174476	112174477	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0069275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	134	382	0	ENST00000257430.4:c.3186_3187del	p.Ser1063Ter	p.S1063*	ENST00000257430	NM_000038.5	1062	cAA/c																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0069275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	70	225	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6227020	6227020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	216	404	0	ENST00000252674.7:c.514C>T	p.Pro172Ser	p.P172S	ENST00000252674	NM_005934.3	172	Ccc/Tcc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554423	63554423	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	252	453	0	ENST00000307078.5:c.316G>C	p.Asp106His	p.D106H	ENST00000307078	NM_004655.3	106	Gat/Cat																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519893		P-0069276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	99	349	0	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0069276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	66	403	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265989	41266253	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTA	TAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTA	-			P-0069276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	22	249	0	ENST00000349496.5:c.14-27_241+10del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
BARD1	580	MSKCC	GRCh37	2	215645775	215645775	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs776157713		P-0069276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	22	349	0	ENST00000260947.4:c.823T>A	p.Leu275Ile	p.L275I	ENST00000260947	NM_000465.2	275	Tta/Ata																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521511	8521511	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1193937945		P-0069276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	40	331	0	ENST00000356435.5:c.727A>G	p.Thr243Ala	p.T243A	ENST00000356435		243	Act/Gct																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259503	89259503	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	25	398	0	ENST00000336596.2:c.647T>G	p.Val216Gly	p.V216G	ENST00000336596	NM_005233.5	216	gTa/gGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398278	25398279	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGC			P-0069276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	43	253	0	ENST00000256078.4:c.38_40dup	p.Gly13dup	p.G13dup	ENST00000256078	NM_033360.2	13	gta/gGCGta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0069289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	259	451	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0069289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	85	345	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30102151	30102151	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1439477100		P-0069289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	45	227	0	ENST00000331968.5:c.1316G>A	p.Arg439Gln	p.R439Q	ENST00000331968	NM_002742.2	439	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	118	240	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137320998	137320998	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771637845		P-0069289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	100	421	0	ENST00000481739.1:c.955G>A	p.Ala319Thr	p.A319T	ENST00000481739	NM_002957.4	319	Gcc/Acc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572204	64572204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	122	495	0	ENST00000337652.1:c.1450C>T	p.Arg484Trp	p.R484W	ENST00000337652	NM_130803.2	484	Cgg/Tgg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119808	70119809	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGCGA			P-0069289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	157	407	0	ENST00000245479.2:c.813_817dup	p.Val273AlafsTer8	p.V273Afs*8	ENST00000245479	NM_000346.3	270	-/CGCGA																																																																															
NBN	4683	MSKCC	GRCh37	8	90993030	90993030	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	154	278	0	ENST00000265433.3:c.412T>C	p.Phe138Leu	p.F138L	ENST00000265433	NM_002485.4	138	Ttt/Ctt																																																																															
SMO	6608	MSKCC	GRCh37	7	128843247	128843247	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	182	416	0	ENST00000249373.3:c.354C>A	p.Cys118Ter	p.C118*	ENST00000249373	NM_005631.4	118	tgC/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112170854	112170862	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GGACCACAG	GGACCACAG	-			P-0069289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	88	273	0	ENST00000257430.4:c.1951_1958+1del		p.EDHRdel	ENST00000257430	NM_000038.5	650	gaGGACCACAGg/gag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0069348-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	112	334	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112137048	112137048	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069348-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	55	270	0	ENST00000257430.4:c.802G>T	p.Glu268Ter	p.E268*	ENST00000257430	NM_000038.5	268	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0069348-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	146	523	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069348-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	224	407	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210691	5210691	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0069348-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	70	477	0	ENST00000357368.4:c.5360G>A	p.Arg1787Gln	p.R1787Q	ENST00000357368	NM_002850.3	1787	cGg/cAg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460351	149460351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1318254419		P-0069348-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	68	345	0	ENST00000286301.3:c.286G>A	p.Ala96Thr	p.A96T	ENST00000286301	NM_005211.3	96	Gcc/Acc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120291	70120292	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0069348-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	255	422	0	ENST00000245479.2:c.1294dup	p.Tyr432LeufsTer146	p.Y432Lfs*146	ENST00000245479	NM_000346.3	431	-/T																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0069348-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	121	290	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001505	150001576	+	inframe_deletion	In_Frame_Del	DEL	ATTTTAGCCCTTTTAAGACGGATGTAATTAGATTCTTTTTGGCAAAGCATCTTTCTCATTTGATCCTGGGCA	ATTTTAGCCCTTTTAAGACGGATGTAATTAGATTCTTTTTGGCAAAGCATCTTTCTCATTTGATCCTGGGCA	-			P-0069348-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	37	339	0	ENST00000253339.5:c.2028_2099del	p.Asp676_Met700delinsGlu	p.D676_M700delinsE	ENST00000253339		676	gaTGCCCAGGATCAAATGAGAAAGATGCTTTGCCAAAAAGAATCTAATTACATCCGTCTTAAAAGGGCTAAAATg/gag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52712526	52712526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069348-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	184	299	0	ENST00000394830.3:c.226C>A	p.Pro76Thr	p.P76T	ENST00000394830	NM_018313.4	76	Cca/Aca																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436979	110436979	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069348-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	108	468	0	ENST00000375856.3:c.1422C>G	p.His474Gln	p.H474Q	ENST00000375856	NM_003749.2	474	caC/caG																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46509403	46509403	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069348-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	92	385	0	ENST00000262741.5:c.1328C>A	p.Ser443Tyr	p.S443Y	ENST00000262741	NM_003629.3	443	tCc/tAc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8075582	8075582	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			193	36	432	0	ENST00000377482.5:c.98A>G	p.Tyr33Cys	p.Y33C	ENST00000377482	NM_018948.3	33	tAc/tGc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781606	9781606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			202	45	545	0	ENST00000377346.4:c.1916C>T	p.Ala639Val	p.A639V	ENST00000377346	NM_005026.3	639	gCc/gTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258764	16258764	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs530603850		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	90	641	0	ENST00000375759.3:c.6029G>A	p.Arg2010His	p.R2010H	ENST00000375759	NM_015001.2	2010	cGt/cAt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260749	16260749	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769855469		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			217	99	669	1	ENST00000375759.3:c.8014G>A	p.Val2672Met	p.V2672M	ENST00000375759	NM_015001.2	2672	Gtg/Atg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			104	70	496	2	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			95	53	553	0	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																															
STK40	83931	MSKCC	GRCh37	1	36814310	36814310	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773276972		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			178	92	424	0	ENST00000373129.3:c.730G>A	p.Val244Met	p.V244M	ENST00000373129	NM_032017.1	244	Gtg/Atg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36938156	36938156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			131	35	487	0	ENST00000361632.4:c.805C>T	p.Arg269Cys	p.R269C	ENST00000361632		269	Cgc/Tgc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166515	118166515	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376774297		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			197	78	551	2	ENST00000369448.3:c.1025C>T	p.Ala342Val	p.A342V	ENST00000369448	NM_017709.3	342	gCg/gTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458724	120458724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			168	68	597	2	ENST00000256646.2:c.6621G>A	p.Met2207Ile	p.M2207I	ENST00000256646	NM_024408.3	2207	atG/atA																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468185	120468185	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			251	62	723	6	ENST00000256646.2:c.4254del	p.Ser1419AlafsTer8	p.S1419Afs*8	ENST00000256646	NM_024408.3	1418	ccC/cc																																																																															
PARP1	142	MSKCC	GRCh37	1	226567647	226567647	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			160	85	588	1	ENST00000366794.5:c.1519del	p.Ser507AlafsTer17	p.S507Afs*17	ENST00000366794	NM_001618.3	507	Agc/gc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106003	8106003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			202	136	521	0	ENST00000346208.3:c.823C>T	p.Arg275Trp	p.R275W	ENST00000346208		275	Cgg/Tgg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649922	88649922	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			149	11	259	0	ENST00000372037.3:c.176del	p.Leu59Ter	p.L59*	ENST00000372037	NM_004329.2	57	ccT/cc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			138	75	278	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			193	24	394	7	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741858	17741858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			86	44	469	0	ENST00000250003.3:c.529G>A	p.Ala177Thr	p.A177T	ENST00000250003	NM_002478.4	177	Gcc/Acc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137241	64137241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			222	80	536	0	ENST00000334205.4:c.1673G>A	p.Arg558Gln	p.R558Q	ENST00000334205	NM_003942.2	558	cGg/cAg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625362	69625362	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781807006		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			204	12	575	0	ENST00000334134.2:c.431G>A	p.Arg144His	p.R144H	ENST00000334134	NM_005247.2	144	cGc/cAc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94923020	94923020	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			137	76	404	0	ENST00000536441.1:c.448C>T	p.Gln150Ter	p.Q150*	ENST00000536441	NM_144665.3	150	Caa/Taa																																																																															
PGR	5241	MSKCC	GRCh37	11	100998709	100998709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			199	25	601	0	ENST00000325455.5:c.1093C>T	p.Pro365Ser	p.P365S	ENST00000325455	NM_001202474.3	365	Ccc/Tcc																																																																															
PGR	5241	MSKCC	GRCh37	11	100999024	100999024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			112	89	600	1	ENST00000325455.5:c.778del	p.Ala260ArgfsTer41	p.A260Rfs*41	ENST00000325455	NM_001202474.3	260	Gcg/cg																																																																															
ATM	472	MSKCC	GRCh37	11	108204681	108204681	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs745775382		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			131	100	355	0	ENST00000278616.4:c.7996A>G	p.Thr2666Ala	p.T2666A	ENST00000278616	NM_000051.3	2666	Act/Gct																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307348	118307348	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			36	32	217	2	ENST00000534358.1:c.126del	p.Pro45ArgfsTer105	p.P45Rfs*105	ENST00000534358	NM_005933.3	41	Ccc/cc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118348822	118348822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			227	99	435	0	ENST00000534358.1:c.3475C>T	p.Pro1159Ser	p.P1159S	ENST00000534358	NM_005933.3	1159	Ccc/Tcc																																																																															
CBL	867	MSKCC	GRCh37	11	119170403	119170403	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			152	99	511	0	ENST00000264033.4:c.2633T>C	p.Leu878Ser	p.L878S	ENST00000264033	NM_005188.3	878	tTg/tCg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			193	114	548	9	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	442811	442811	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			185	17	445	0	ENST00000399788.2:c.1495del	p.Glu499SerfsTer19	p.E499Sfs*19	ENST00000399788	NM_001042603.1	499	Gag/ag																																																																															
CCND2	894	MSKCC	GRCh37	12	4383367	4383367	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			108	39	518	0	ENST00000261254.3:c.161A>G	p.Tyr54Cys	p.Y54C	ENST00000261254	NM_001759.3	54	tAc/tGc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			176	60	407	1	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231433	46231433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			225	17	388	0	ENST00000334344.6:c.1273C>T	p.Leu425Phe	p.L425F	ENST00000334344	NM_152641.2	425	Ctc/Ttc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			148	86	514	0	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112884105	112884105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			151	23	261	0	ENST00000351677.2:c.40G>A	p.Val14Met	p.V14M	ENST00000351677	NM_002834.3	14	Gtg/Atg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110079	115110079	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			169	12	444	0	ENST00000257566.3:c.1799T>C	p.Leu600Pro	p.L600P	ENST00000257566	NM_016569.3	600	cTg/cCg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112383	115112383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			126	75	634	0	ENST00000257566.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000257566	NM_016569.3	453	Gag/Aag																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426830	121426830	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201934320		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			220	33	503	0	ENST00000257555.6:c.521C>T	p.Ala174Val	p.A174V	ENST00000257555		174	gCg/gTg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			113	75	534	1	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041174	29041174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			172	69	479	0	ENST00000282397.4:c.254G>A	p.Gly85Asp	p.G85D	ENST00000282397	NM_002019.4	85	gGc/gAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912868	32912868	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs117187202		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			200	118	458	0	ENST00000380152.3:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000380152		1459	aAc/aGc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			222	65	426	4	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643771	38643771	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			109	86	471	0	ENST00000299084.4:c.1241T>C	p.Val414Ala	p.V414A	ENST00000299084	NM_152594.2	414	gTa/gCa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43720317	43720317	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1449770187		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			177	61	422	2	ENST00000382044.4:c.3725A>G	p.His1242Arg	p.H1242R	ENST00000382044	NM_001141980.1	1242	cAt/cGt																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			216	75	493	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66782062	66782062	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			170	45	396	0	ENST00000307102.5:c.1034del	p.Asn345ThrfsTer8	p.N345Tfs*8	ENST00000307102	NM_002755.3	343	atA/at																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678536	88678536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			167	11	502	0	ENST00000360948.2:c.1000C>T	p.His334Tyr	p.H334Y	ENST00000360948	NM_001012338.2	334	Cac/Tac																																																																															
BLM	641	MSKCC	GRCh37	15	91304090	91304090	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			224	22	510	0	ENST00000355112.3:c.1487T>C	p.Leu496Ser	p.L496S	ENST00000355112	NM_000057.2	496	tTa/tCa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251006	99251006	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			83	135	510	0	ENST00000268035.6:c.310A>G	p.Thr104Ala	p.T104A	ENST00000268035	NM_000875.3	104	Acg/Gcg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99440050	99440050	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs768385917		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			195	17	429	0	ENST00000268035.6:c.1018A>G	p.Thr340Ala	p.T340A	ENST00000268035	NM_000875.3	340	Acc/Gcc																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2090159	2090159	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2233522		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			192	51	583	0	ENST00000219066.1:c.790G>A	p.Ala264Thr	p.A264T	ENST00000219066	NM_002528.5	264	Gcc/Acc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779211	3779211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783507		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			102	19	445	1	ENST00000262367.5:c.5837del	p.Pro1946HisfsTer30	p.P1946Hfs*30	ENST00000262367	NM_004380.2	1946	cCa/ca																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			219	42	396	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30133298	30133298	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772578869		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			234	18	547	0	ENST00000263025.4:c.200G>A	p.Arg67His	p.R67H	ENST00000263025	NM_002746.2	67	cGc/cAc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			139	93	346	0	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																															
CDH1	999	MSKCC	GRCh37	16	68857422	68857422	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1401120990		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	21	462	0	ENST00000261769.5:c.2057G>A	p.Cys686Tyr	p.C686Y	ENST00000261769	NM_004360.3	686	tGt/tAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830199	72830199	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	34	566	0	ENST00000268489.5:c.6382C>A	p.Leu2128Met	p.L2128M	ENST00000268489	NM_006885.3	2128	Ctg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992883	72992883	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770677747		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			161	76	434	0	ENST00000268489.5:c.1162G>A	p.Glu388Lys	p.E388K	ENST00000268489	NM_006885.3	388	Gag/Aag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993165	72993165	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202133340		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			202	93	543	0	ENST00000268489.5:c.880G>A	p.Val294Ile	p.V294I	ENST00000268489	NM_006885.3	294	Gtc/Atc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993508	72993509	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			162	65	641	1	ENST00000268489.5:c.536dup	p.Lys180GlnfsTer30	p.K180Qfs*30	ENST00000268489	NM_006885.3	179	ggc/ggGc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953258	81953258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776768909		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			151	73	451	0	ENST00000359376.3:c.2224C>T	p.Arg742Cys	p.R742C	ENST00000359376	NM_002661.3	742	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			153	117	528	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs530941076		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			149	130	606	0	ENST00000269305.4:c.658T>C	p.Tyr220His	p.Y220H	ENST00000269305	NM_001126112.2	220	Tat/Cat																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11924240	11924240	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1462414385		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			99	54	605	0	ENST00000353533.5:c.41del	p.Gly14AlafsTer11	p.G14Afs*11	ENST00000353533	NM_003010.3	13	Ggg/gg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11999013	11999013	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			113	39	348	0	ENST00000353533.5:c.513+2T>C		p.X171_splice	ENST00000353533	NM_003010.3	171																																																																																
NCOR1	9611	MSKCC	GRCh37	17	15935659	15935659	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745396360		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			221	63	490	0	ENST00000268712.3:c.7274C>T	p.Ala2425Val	p.A2425V	ENST00000268712	NM_006311.3	2425	gCc/gTc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15978884	15978884	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			140	90	440	0	ENST00000268712.3:c.3634T>C	p.Tyr1212His	p.Y1212H	ENST00000268712	NM_006311.3	1212	Tat/Cat																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16024365	16024365	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			251	15	398	0	ENST00000268712.3:c.1852+1G>A		p.X618_splice	ENST00000268712	NM_006311.3	618																																																																																
NCOR1	9611	MSKCC	GRCh37	17	16029445	16029445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			361	20	407	0	ENST00000268712.3:c.1585G>A	p.Glu529Lys	p.E529K	ENST00000268712	NM_006311.3	529	Gaa/Aaa																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30322768	30322768	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			184	22	367	1	ENST00000322652.5:c.1786del	p.Thr596ProfsTer18	p.T596Pfs*18	ENST00000322652	NM_015355.2	594	gAa/ga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37646922	37646922	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	36	478	1	ENST00000447079.4:c.2048del	p.Pro683GlnfsTer70	p.P683Qfs*70	ENST00000447079	NM_015083.1	682	Ccc/cc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40497632	40497632	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	49	380	0	ENST00000264657.5:c.317C>A	p.Ala106Asp	p.A106D	ENST00000264657	NM_139276.2	106	gCc/gAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			203	125	683	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435168	56435168	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766439784		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			263	67	676	0	ENST00000407977.2:c.1969C>T	p.Arg657Trp	p.R657W	ENST00000407977		657	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492937	56492937	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			122	68	431	0	ENST00000407977.2:c.2T>C	p.Met1?	p.M1?	ENST00000407977		1	aTg/aCg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			194	101	655	1	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119987	70119987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			114	73	547	0	ENST00000245479.2:c.989G>A	p.Ser330Asn	p.S330N	ENST00000245479	NM_000346.3	330	aGc/aAc																																																																															
YES1	7525	MSKCC	GRCh37	18	736949	736949	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			189	31	398	0	ENST00000314574.4:c.1150A>G	p.Met384Val	p.M384V	ENST00000314574	NM_005433.3	384	Atg/Gtg																																																																															
STK11	6794	MSKCC	GRCh37	19	1218446	1218447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			219	15	478	0	ENST00000326873.7:c.326dup	p.Asn109LysfsTer54	p.N109Kfs*54	ENST00000326873	NM_000455.4	107	-/A																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622124	1622124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			192	12	624	0	ENST00000344749.5:c.751C>T	p.Pro251Ser	p.P251S	ENST00000344749	NM_001136139.2	251	Ccc/Tcc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222730	5222731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs766222935		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			116	43	527	0	ENST00000357368.4:c.3072dup	p.Val1025ArgfsTer34	p.V1025Rfs*34	ENST00000357368	NM_002850.3	1024	-/C																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272238	15272238	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs760917811		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			116	21	587	0	ENST00000263388.2:c.6201del	p.Lys2069ArgfsTer16	p.K2069Rfs*16	ENST00000263388	NM_000435.2	2067	ccC/cc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276860	15276861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs753725730		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			160	59	578	0	ENST00000263388.2:c.5404dup	p.Ala1802GlyfsTer8	p.A1802Gfs*8	ENST00000263388	NM_000435.2	1802	gct/gGct																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15297936	15297936	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747661515		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			129	73	609	1	ENST00000263388.2:c.1820G>A	p.Arg607His	p.R607H	ENST00000263388	NM_000435.2	607	cGc/cAc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15378281	15378281	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	41	442	0	ENST00000263377.2:c.505A>G	p.Thr169Ala	p.T169A	ENST00000263377	NM_058243.2	169	Acc/Gcc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18274097	18274097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751032325		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	15	597	0	ENST00000222254.8:c.1315G>A	p.Val439Met	p.V439M	ENST00000222254	NM_005027.3	439	Gtg/Atg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976896	18976896	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1333445130		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			199	12	438	1	ENST00000262803.5:c.3281C>T	p.Ala1094Val	p.A1094V	ENST00000262803	NM_002911.3	1094	gCg/gTg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256768	19256769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1202792889		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			160	36	485	1	ENST00000162023.5:c.944dup	p.Val316SerfsTer6	p.V316Sfs*6	ENST00000162023		315	cca/ccCa																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308125	30308125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			175	121	480	0	ENST00000262643.3:c.262C>T	p.Pro88Ser	p.P88S	ENST00000262643	NM_001238.2	88	Cca/Tca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211138	36211138	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			189	127	617	0	ENST00000222270.7:c.889C>T	p.Arg297Ter	p.R297*	ENST00000222270	NM_014727.1	297	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229354	36229354	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1190330467		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			247	13	594	0	ENST00000222270.7:c.8044C>T	p.Arg2682Cys	p.R2682C	ENST00000222270	NM_014727.1	2682	Cgt/Tgt																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			243	15	591	0	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
AXL	558	MSKCC	GRCh37	19	41759584	41759584	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			180	25	461	0	ENST00000301178.4:c.2007A>G	p.Ile669Met	p.I669M	ENST00000301178	NM_021913.4	669	atA/atG																																																																															
ERF	2077	MSKCC	GRCh37	19	42753149	42753151	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs199960550		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			226	43	726	4	ENST00000222329.4:c.1113_1115del	p.Ser373del	p.S373del	ENST00000222329	NM_006494.2	371	tcTTCc/tcc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910304	50910304	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			133	81	527	0	ENST00000440232.2:c.1559T>C	p.Leu520Pro	p.L520P	ENST00000440232	NM_002691.3	520	cTg/cCg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39222520	39222520	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	41	369	2	ENST00000402219.2:c.3090del	p.Lys1030AsnfsTer6	p.K1030Nfs*6	ENST00000402219	NM_005633.3	1030	aaA/aa																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128044527	128044527	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772229792		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			201	18	448	0	ENST00000285398.2:c.1094G>A	p.Gly365Asp	p.G365D	ENST00000285398	NM_000122.1	365	gGc/gAc																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872990	136872990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	29	562	0	ENST00000241393.3:c.508C>T	p.Pro170Ser	p.P170S	ENST00000241393	NM_003467.2	170	Ccc/Tcc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403254	213403254	+	frameshift_variant,start_lost,start_retained_variant	Frame_Shift_Del	DEL	T	T	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			212	29	525	0	ENST00000342788.4:c.1del	p.Met1?	p.M1?	ENST00000342788	NM_005235.2	1	Atg/tg																																																																															
BARD1	580	MSKCC	GRCh37	2	215593483	215593483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139785364		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			234	17	534	0	ENST00000260947.4:c.2251C>T	p.Arg751Trp	p.R751W	ENST00000260947	NM_000465.2	751	Cgg/Tgg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			134	36	623	12	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			152	48	610	2	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560841	9560841	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			248	32	500	0	ENST00000353224.5:c.941A>G	p.Asn314Ser	p.N314S	ENST00000353224	NM_177990.2	314	aAc/aGc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021497	31021497	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs549287573		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			176	77	547	0	ENST00000375687.4:c.1496G>A	p.Arg499His	p.R499H	ENST00000375687	NM_015338.5	499	cGt/cAt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024085	31024085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			187	71	604	1	ENST00000375687.4:c.3570G>T	p.Arg1190Ser	p.R1190S	ENST00000375687	NM_015338.5	1190	agG/agT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730876	40730876	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372862828		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			121	71	545	0	ENST00000373198.4:c.3659G>A	p.Arg1220Gln	p.R1220Q	ENST00000373198	NM_133170.3	1220	cGg/cAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735467	40735467	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776642212		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	12	483	0	ENST00000373198.4:c.3406C>T	p.Arg1136Cys	p.R1136C	ENST00000373198	NM_133170.3	1136	Cgt/Tgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944527	40944527	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371433526		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			143	75	491	0	ENST00000373198.4:c.1975G>A	p.Asp659Asn	p.D659N	ENST00000373198	NM_133170.3	659	Gat/Aat																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076931	41076932	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			127	22	347	0	ENST00000373198.4:c.1488dup	p.Pro497AlafsTer3	p.P497Afs*3	ENST00000373198	NM_133170.3	496	-/G																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484596	57484596	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913494		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	113	521	0	ENST00000371085.3:c.680A>G	p.Gln227Arg	p.Q227R	ENST00000371085	NM_000516.4	227	cAg/cGg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164745	36164745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	88	707	0	ENST00000300305.3:c.1130A>G	p.Tyr377Cys	p.Y377C	ENST00000300305		377	tAc/tGc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164769	36164769	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755073984		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			192	88	713	0	ENST00000300305.3:c.1106C>T	p.Ser369Leu	p.S369L	ENST00000300305		369	tCg/tTg																																																																															
ERG	2078	MSKCC	GRCh37	21	39755572	39755572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			198	40	605	0	ENST00000288319.7:c.1193C>T	p.Ala398Val	p.A398V	ENST00000288319	NM_182918.3	398	gCc/gTc																																																																															
ERG	2078	MSKCC	GRCh37	21	39764346	39764347	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			197	83	435	0	ENST00000288319.7:c.765dup	p.Arg256GlnfsTer29	p.R256Qfs*29	ENST00000288319	NM_182918.3	255	-/C																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866364	42866364	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753509316		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			318	22	696	0	ENST00000398585.3:c.268G>A	p.Ala90Thr	p.A90T	ENST00000398585	NM_001135099.1	90	Gcc/Acc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44520604	44520604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			202	102	375	0	ENST00000291552.4:c.158G>A	p.Arg53His	p.R53H	ENST00000291552	NM_006758.2	53	cGt/cAt																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175788	24175788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			243	52	598	0	ENST00000263121.7:c.1016C>T	p.Ala339Val	p.A339V	ENST00000263121	NM_003073.3	339	gCc/gTc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279819	29279820	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			54	14	115	0	ENST00000544604.2:c.70dup	p.Arg24ProfsTer85	p.R24Pfs*85	ENST00000544604	NM_001206998.1	22	cgc/cgCc																																																																															
EP300	2033	MSKCC	GRCh37	22	41523642	41523642	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1386169409		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			232	17	505	0	ENST00000263253.7:c.1058G>A	p.Arg353His	p.R353H	ENST00000263253	NM_001429.3	353	cGc/cAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41568635	41568635	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			193	67	484	1	ENST00000263253.7:c.4585C>T	p.Arg1529Ter	p.R1529*	ENST00000263253	NM_001429.3	1529	Cga/Tga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			231	71	439	2	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981831	63981831	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs760584775		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			169	105	628	3	ENST00000295900.6:c.2333G>C	p.Gly778Ala	p.G778A	ENST00000295900	NM_000333.3	778	gGc/gCc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71037192	71037192	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	106	506	0	ENST00000318789.4:c.1099A>G	p.Thr367Ala	p.T367A	ENST00000318789	NM_032682.5	367	Acc/Gcc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204842	128204842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1294458213		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			158	80	578	3	ENST00000341105.2:c.599del	p.Gly200ValfsTer18	p.G200Vfs*18	ENST00000341105	NM_032638.4	200	gGt/gt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134514525	134514525	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs55650774		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			98	18	399	0	ENST00000398015.3:c.52A>G	p.Met18Val	p.M18V	ENST00000398015	NM_004441.4	18	Atg/Gtg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670843	134670843	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			186	13	474	0	ENST00000398015.3:c.754C>T	p.Arg252Ter	p.R252*	ENST00000398015	NM_004441.4	252	Cga/Tga																																																																															
ATR	545	MSKCC	GRCh37	3	142212150	142212150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			125	74	335	0	ENST00000350721.4:c.5902G>A	p.Asp1968Asn	p.D1968N	ENST00000350721	NM_001184.3	1968	Gat/Aat																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535405	66535405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			111	65	496	1	ENST00000273854.3:c.56G>A	p.Gly19Asp	p.G19D	ENST00000273854	NM_004439.5	19	gGc/gAc																																																																															
TET2	54790	MSKCC	GRCh37	4	106157870	106157870	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs34485921		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			177	28	511	0	ENST00000380013.4:c.2771A>G	p.His924Arg	p.H924R	ENST00000380013	NM_001127208.2	924	cAt/cGt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143003209	143003209	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			124	80	296	0	ENST00000262992.4:c.2617A>G	p.Ile873Val	p.I873V	ENST00000262992	NM_001101669.1	873	Atc/Gtc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244155	153244156	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			240	78	607	0	ENST00000281708.4:c.2001dup	p.Ser668GlufsTer26	p.S668Efs*26	ENST00000281708	NM_033632.3	667	-/G																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38982024	38982024	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			153	69	393	0	ENST00000357387.3:c.698A>G	p.His233Arg	p.H233R	ENST00000357387	NM_152756.3	233	cAc/cGc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161270	56161270	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			104	57	346	0	ENST00000399503.3:c.1139T>C	p.Leu380Ser	p.L380S	ENST00000399503	NM_005921.1	380	tTa/tCa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181846	56181846	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			140	86	321	0	ENST00000399503.3:c.4072del	p.Ser1358ArgfsTer19	p.S1358Rfs*19	ENST00000399503	NM_005921.1	1357	cTt/ct																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			171	78	538	11	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588988	67588988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			185	42	414	0	ENST00000274335.5:c.1079C>T	p.Ala360Val	p.A360V	ENST00000274335		360	gCg/gTg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672747	86672747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			137	80	473	0	ENST00000274376.6:c.2234G>A	p.Cys745Tyr	p.C745Y	ENST00000274376	NM_002890.2	745	tGt/tAt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86674347	86674347	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			161	87	339	0	ENST00000274376.6:c.2479T>C	p.Ser827Pro	p.S827P	ENST00000274376	NM_002890.2	827	Tct/Cct																																																																															
APC	324	MSKCC	GRCh37	5	112174292	112174292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			200	15	475	0	ENST00000257430.4:c.3001C>T	p.Pro1001Ser	p.P1001S	ENST00000257430	NM_000038.5	1001	Cca/Tca																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	9	479	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																															
RAD50	10111	MSKCC	GRCh37	5	131940623	131940623	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755939251		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			158	89	364	0	ENST00000265335.6:c.2650C>T	p.Arg884Cys	p.R884C	ENST00000265335		884	Cgt/Tgt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180036903	180036903	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			127	64	547	0	ENST00000261937.6:c.3807+2T>C		p.X1269_splice	ENST00000261937	NM_182925.4	1269																																																																																
FLT4	2324	MSKCC	GRCh37	5	180048638	180048638	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			138	57	605	0	ENST00000261937.6:c.1924del	p.Arg642AlafsTer43	p.R642Afs*43	ENST00000261937	NM_182925.4	642	Cgc/gc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180055897	180055897	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			131	33	435	0	ENST00000261937.6:c.1088del	p.Pro363ArgfsTer27	p.P363Rfs*27	ENST00000261937	NM_182925.4	363	cCg/cg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671241	30671241	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763451532		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	22	546	1	ENST00000376406.3:c.5636G>A	p.Arg1879His	p.R1879H	ENST00000376406	NM_014641.2	1879	cGc/cAc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805787	32805788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1174402903		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			252	17	661	0	ENST00000374899.4:c.223dup	p.Leu75ProfsTer92	p.L75Pfs*92	ENST00000374899	NM_018833.2	75	ctg/cCtg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821048	32821048	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	14	663	1	ENST00000354258.4:c.546del	p.Ser184ProfsTer54	p.S184Pfs*54	ENST00000354258	NM_000593.5	182	ccC/cc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199855	138199855	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781186525		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			182	102	583	0	ENST00000237289.4:c.1273C>T	p.Pro425Ser	p.P425S	ENST00000237289	NM_001270507.1	425	Ccg/Tcg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			94	77	398	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508205	106508205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			172	58	530	0	ENST00000359195.3:c.199G>A	p.Val67Met	p.V67M	ENST00000359195	NM_002649.2	67	Gtg/Atg																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			115	36	524	1	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			150	104	383	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148508784	148508784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			168	71	324	0	ENST00000320356.2:c.1880C>T	p.Ala627Val	p.A627V	ENST00000320356	NM_004456.4	627	gCa/gTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151902277	151902277	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1268465923		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			39	15	91	0	ENST00000262189.6:c.3875G>A	p.Arg1292Gln	p.R1292Q	ENST00000262189	NM_170606.2	1292	cGa/cAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012386	152012386	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			194	56	381	1	ENST00000262189.6:c.427del	p.Ser143ValfsTer3	p.S143Vfs*3	ENST00000262189	NM_170606.2	143	Agt/gt																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194648	29194648	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			171	107	565	0	ENST00000240100.2:c.1080del	p.Thr361ProfsTer62	p.T361Pfs*62	ENST00000240100	NM_001394.6	360	ccC/cc																																																																															
LYN	4067	MSKCC	GRCh37	8	56922521	56922521	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1465409982		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			157	95	497	0	ENST00000519728.1:c.1391G>A	p.Arg464His	p.R464H	ENST00000519728	NM_002350.3	464	cGt/cAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033193	69033193	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	30	427	0	ENST00000288368.4:c.3637del	p.Arg1213GlyfsTer31	p.R1213Gfs*31	ENST00000288368	NM_024870.2	1211	ccA/cc																																																																															
NBN	4683	MSKCC	GRCh37	8	90949256	90949256	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			133	63	233	2	ENST00000265433.3:c.2232del	p.Phe744LeufsTer7	p.F744Lfs*7	ENST00000265433	NM_002485.4	744	ttT/tt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141561436	141561436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			177	105	500	0	ENST00000220592.5:c.1369G>A	p.Ala457Thr	p.A457T	ENST00000220592	NM_012154.3	457	Gcc/Acc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341899	8341899	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1292093096		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			165	10	432	0	ENST00000356435.5:c.4741A>G	p.Ile1581Val	p.I1581V	ENST00000356435		1581	Att/Gtt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229611	98229611	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060502293		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			125	57	436	0	ENST00000331920.6:c.2347C>T	p.Arg783Trp	p.R783W	ENST00000331920	NM_000264.3	783	Cgg/Tgg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98268792	98268793	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			229	25	522	1	ENST00000331920.6:c.290dup	p.Asn97LysfsTer43	p.N97Kfs*43	ENST00000331920	NM_000264.3	97	aac/aaAc																																																																															
ABL1	25	MSKCC	GRCh37	9	133730186	133730186	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			120	59	329	0	ENST00000318560.5:c.254-2A>G		p.X85_splice	ENST00000318560	NM_005157.4	85																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139400022	139400023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			131	119	603	1	ENST00000277541.6:c.4325dup	p.Pro1443AlafsTer36	p.P1443Afs*36	ENST00000277541	NM_017617.3	1442	ccg/ccCg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932603	39932603	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			127	95	682	0	ENST00000378444.4:c.1996A>G	p.Ile666Val	p.I666V	ENST00000378444	NM_001123385.1	666	Att/Gtt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44879955	44879955	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1269736703		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			189	117	384	0	ENST00000377967.4:c.544G>A	p.Asp182Asn	p.D182N	ENST00000377967	NM_021140.2	182	Gac/Aac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938459	44938459	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			143	62	394	0	ENST00000377967.4:c.3007C>T	p.Gln1003Ter	p.Q1003*	ENST00000377967	NM_021140.2	1003	Cag/Tag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410472	63410472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			134	58	588	0	ENST00000330258.3:c.2695G>A	p.Ala899Thr	p.A899T	ENST00000330258	NM_152424.3	899	Gca/Aca																																																																															
AR	367	MSKCC	GRCh37	X	66766293	66766293	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			127	58	481	1	ENST00000374690.3:c.1305G>A	p.Trp435Ter	p.W435*	ENST00000374690	NM_000044.3	435	tgG/tgA																																																																															
MED12	9968	MSKCC	GRCh37	X	70354292	70354292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			175	13	434	2	ENST00000374080.3:c.4703G>A	p.Gly1568Asp	p.G1568D	ENST00000374080		1568	gGc/gAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76939105	76939105	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782088332		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			219	43	508	0	ENST00000373344.5:c.1643G>A	p.Gly548Asp	p.G548D	ENST00000373344	NM_000489.3	548	gGc/gAc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279861	46279866	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-	rs779458461		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			195	22	527	0	ENST00000371998.3:c.3810_3815del	p.Gln1275_Gln1276del	p.Q1275_Q1276del	ENST00000371998		1263	CAGCAA/-																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			203	71	631	1	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
NADK	65220	MSKCC	GRCh37	1	1696742	1696742	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			208	60	454	0	ENST00000341426.5:c.104A>G	p.Asn35Ser	p.N35S	ENST00000341426	NM_023018.4	35	aAc/aGc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780191	9780191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			146	88	586	0	ENST00000377346.4:c.1361A>G	p.Asn454Ser	p.N454S	ENST00000377346	NM_005026.3	454	aAc/aGc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782631	9782631	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			127	36	374	0	ENST00000377346.4:c.2393A>G	p.Asp798Gly	p.D798G	ENST00000377346	NM_005026.3	798	gAc/gGc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11292557	11292557	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			192	16	370	0	ENST00000361445.4:c.2450T>C	p.Val817Ala	p.V817A	ENST00000361445	NM_004958.3	817	gTt/gCt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199633	16199633	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			213	15	452	0	ENST00000375759.3:c.404+2T>C		p.X135_splice	ENST00000375759	NM_015001.2	135																																																																																
SPEN	23013	MSKCC	GRCh37	1	16203160	16203160	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs750222661		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			150	92	475	0	ENST00000375759.3:c.868A>G	p.Thr290Ala	p.T290A	ENST00000375759	NM_015001.2	290	Acc/Gcc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259343	16259343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			169	79	675	0	ENST00000375759.3:c.6608G>A	p.Arg2203Lys	p.R2203K	ENST00000375759	NM_015001.2	2203	aGg/aAg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260029	16260029	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	14	639	0	ENST00000375759.3:c.7298del	p.Pro2433HisfsTer27	p.P2433Hfs*27	ENST00000375759	NM_015001.2	2432	Ccc/cc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260933	16260933	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs767800167		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			300	37	681	0	ENST00000375759.3:c.8198A>T	p.Asn2733Ile	p.N2733I	ENST00000375759	NM_015001.2	2733	aAt/aTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056293	27056293	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			175	91	534	0	ENST00000324856.7:c.1289A>G	p.Tyr430Cys	p.Y430C	ENST00000324856	NM_006015.4	430	tAc/tGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27058019	27058019	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			200	80	557	0	ENST00000324856.7:c.1727A>G	p.Gln576Arg	p.Q576R	ENST00000324856	NM_006015.4	576	cAg/cGg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097674	27097674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	33	531	0	ENST00000324856.7:c.3263C>T	p.Ala1088Val	p.A1088V	ENST00000324856	NM_006015.4	1088	gCt/gTt																																																																															
SESN2	83667	MSKCC	GRCh37	1	28605690	28605690	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1258760960		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			204	18	490	0	ENST00000253063.3:c.1294C>T	p.Pro432Ser	p.P432S	ENST00000253063	NM_031459.4	432	Cca/Tca																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939441	36939441	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			141	78	606	0	ENST00000361632.4:c.409A>G	p.Thr137Ala	p.T137A	ENST00000361632		137	Acc/Gcc																																																																															
MYCL	4610	MSKCC	GRCh37	1	40367102	40367102	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			132	49	685	0	ENST00000397332.2:c.95A>C	p.Asp32Ala	p.D32A	ENST00000397332	NM_001033082.2	32	gAc/gCc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46509443	46509443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			187	64	497	0	ENST00000262741.5:c.1288C>T	p.Leu430Phe	p.L430F	ENST00000262741	NM_003629.3	430	Ctc/Ttc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65349001	65349001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			208	16	414	0	ENST00000342505.4:c.164A>G	p.Tyr55Cys	p.Y55C	ENST00000342505	NM_002227.2	55	tAc/tGc																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733507	85733507	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	112	515	0	ENST00000370580.1:c.505A>G	p.Asn169Asp	p.N169D	ENST00000370580	NM_003921.4	169	Aat/Gat																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115275242	115275242	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs761965345		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			162	62	405	0	ENST00000438362.2:c.1171A>G	p.Asn391Asp	p.N391D	ENST00000438362	NM_001242891.1	391	Aat/Gat																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150923146	150923146	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			175	68	545	0	ENST00000271640.5:c.1793A>G	p.Asn598Ser	p.N598S	ENST00000271640	NM_001145415.1	598	aAc/aGc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155870339	155870339	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1372704169		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			245	16	461	0	ENST00000368323.3:c.500A>G	p.Tyr167Cys	p.Y167C	ENST00000368323	NM_006912.5	167	tAc/tGc																																																																															
SDHC	6391	MSKCC	GRCh37	1	161293462	161293462	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			120	93	286	0	ENST00000367975.2:c.77+2T>C		p.X26_splice	ENST00000367975	NM_003001.3	26																																																																																
RFWD2	64326	MSKCC	GRCh37	1	175956168	175956168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			244	19	386	0	ENST00000367669.3:c.2044A>G	p.Thr682Ala	p.T682A	ENST00000367669	NM_022457.5	682	Aca/Gca																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175958615	175958615	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			152	78	346	0	ENST00000367669.3:c.1730A>G	p.Asp577Gly	p.D577G	ENST00000367669	NM_022457.5	577	gAt/gGt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175880	176175880	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763204359		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			104	11	473	0	ENST00000367669.3:c.235G>A	p.Gly79Ser	p.G79S	ENST00000367669	NM_022457.5	79	Ggc/Agc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193094270	193094270	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			160	81	342	0	ENST00000367435.3:c.160T>C	p.Tyr54His	p.Y54H	ENST00000367435	NM_024529.4	54	Tac/Cac																																																																															
PARP1	142	MSKCC	GRCh37	1	226566921	226566921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			183	99	537	0	ENST00000366794.5:c.1667C>T	p.Thr556Ile	p.T556I	ENST00000366794	NM_001618.3	556	aCc/aTc																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230472877	230472877	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	17	466	0	ENST00000525115.1:c.845T>C	p.Leu282Pro	p.L282P	ENST00000525115		282	cTg/cCg																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488877	231488877	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			212	13	509	0	ENST00000295050.7:c.1240A>G	p.Lys414Glu	p.K414E	ENST00000295050	NM_032018.5	414	Aag/Gag																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246027104	246027104	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			132	79	393	0	ENST00000388985.4:c.898T>C	p.Trp300Arg	p.W300R	ENST00000388985		300	Tgg/Cgg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097842	8097842	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			147	71	497	0	ENST00000346208.3:c.224A>G	p.Tyr75Cys	p.Y75C	ENST00000346208		75	tAc/tGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8105963	8105963	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			187	115	509	0	ENST00000346208.3:c.783G>C	p.Arg261Ser	p.R261S	ENST00000346208		261	agG/agC																																																																															
RET	5979	MSKCC	GRCh37	10	43601897	43601897	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			176	89	573	0	ENST00000355710.3:c.941A>G	p.Tyr314Cys	p.Y314C	ENST00000355710	NM_020975.4	314	tAc/tGc																																																																															
RET	5979	MSKCC	GRCh37	10	43615138	43615138	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	27	591	0	ENST00000355710.3:c.2552T>C	p.Leu851Pro	p.L851P	ENST00000355710	NM_020975.4	851	cTc/cCc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332848	70332848	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			135	95	476	0	ENST00000373644.4:c.756del	p.Gln254LysfsTer17	p.Q254Kfs*17	ENST00000373644	NM_030625.2	251	ccT/cc																																																																															
TET1	80312	MSKCC	GRCh37	10	70405752	70405752	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			204	16	446	1	ENST00000373644.4:c.3266A>G	p.Lys1089Arg	p.K1089R	ENST00000373644	NM_030625.2	1089	aAg/aGg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114799820	114799820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			205	84	327	0	ENST00000543371.1:c.487G>A	p.Ala163Thr	p.A163T	ENST00000543371	NM_001198531.1	163	Gca/Aca																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123247581	123247581	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			248	23	354	2	ENST00000358487.5:c.1910A>G	p.Asn637Ser	p.N637S	ENST00000358487	NM_000141.4	637	aAc/aGc																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316365	14316365	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			134	84	403	0	ENST00000256196.4:c.240A>T	p.Glu80Asp	p.E80D	ENST00000256196		80	gaA/gaT																																																																															
WT1	7490	MSKCC	GRCh37	11	32456588	32456588	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			87	37	441	0	ENST00000332351.3:c.304T>C	p.Trp102Arg	p.W102R	ENST00000332351	NM_024426.4	102	Tgg/Cgg																																																																															
APLNR	187	MSKCC	GRCh37	11	57004115	57004115	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs752254107		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			170	88	589	0	ENST00000257254.3:c.364G>A	p.Gly122Ser	p.G122S	ENST00000257254		122	Ggc/Agc																																																																															
APLNR	187	MSKCC	GRCh37	11	57004387	57004387	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			129	99	537	0	ENST00000257254.3:c.92T>C	p.Ile31Thr	p.I31T	ENST00000257254		31	aTc/aCc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127734	64127734	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			97	73	455	0	ENST00000334205.4:c.227C>A	p.Ala76Asp	p.A76D	ENST00000334205	NM_003942.2	76	gCc/gAc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127802	64127802	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1442820168		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			120	79	504	0	ENST00000334205.4:c.295G>A	p.Val99Ile	p.V99I	ENST00000334205	NM_003942.2	99	Gtc/Atc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64132869	64132869	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			168	71	533	1	ENST00000334205.4:c.1003T>C	p.Phe335Leu	p.F335L	ENST00000334205	NM_003942.2	335	Ttc/Ctc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625408	69625408	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			106	93	573	0	ENST00000334134.2:c.385T>C	p.Tyr129His	p.Y129H	ENST00000334134	NM_005247.2	129	Tat/Cat																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633541	69633541	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			165	19	498	0	ENST00000334134.2:c.161A>G	p.Tyr54Cys	p.Y54C	ENST00000334134	NM_005247.2	54	tAc/tGc																																																																															
GAB2	9846	MSKCC	GRCh37	11	77933211	77933211	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			262	22	472	0	ENST00000361507.4:c.1598A>G	p.Asn533Ser	p.N533S	ENST00000361507	NM_080491.2	533	aAc/aGc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94203741	94203741	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372000848		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			198	18	400	0	ENST00000323929.3:c.913C>T	p.Arg305Trp	p.R305W	ENST00000323929	NM_005591.3	305	Cgg/Tgg																																																																															
PGR	5241	MSKCC	GRCh37	11	100912756	100912756	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			173	52	368	0	ENST00000325455.5:c.2566A>G	p.Ile856Val	p.I856V	ENST00000325455	NM_001202474.3	856	Att/Gtt																																																																															
PGR	5241	MSKCC	GRCh37	11	100999401	100999401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			206	30	585	0	ENST00000325455.5:c.401G>A	p.Cys134Tyr	p.C134Y	ENST00000325455	NM_001202474.3	134	tGc/tAc																																																																															
PGR	5241	MSKCC	GRCh37	11	100999770	100999770	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754148309		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			186	21	506	0	ENST00000325455.5:c.32C>T	p.Ala11Val	p.A11V	ENST00000325455	NM_001202474.3	11	gCt/gTt																																																																															
ATM	472	MSKCC	GRCh37	11	108117719	108117719	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			100	62	392	0	ENST00000278616.4:c.930T>A	p.Ser310Arg	p.S310R	ENST00000278616	NM_000051.3	310	agT/agA																																																																															
ATM	472	MSKCC	GRCh37	11	108158381	108158381	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			215	18	375	0	ENST00000278616.4:c.4048A>G	p.Thr1350Ala	p.T1350A	ENST00000278616	NM_000051.3	1350	Acg/Gcg																																																																															
ATM	472	MSKCC	GRCh37	11	108196064	108196064	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			194	29	388	1	ENST00000278616.4:c.6600A>T	p.Glu2200Asp	p.E2200D	ENST00000278616	NM_000051.3	2200	gaA/gaT																																																																															
ATM	472	MSKCC	GRCh37	11	108196087	108196087	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			197	26	419	0	ENST00000278616.4:c.6623A>G	p.His2208Arg	p.H2208R	ENST00000278616	NM_000051.3	2208	cAc/cGc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344900	118344900	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs782551573		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			139	98	501	0	ENST00000534358.1:c.3026T>C	p.Met1009Thr	p.M1009T	ENST00000534358	NM_005933.3	1009	aTg/aCg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118362521	118362521	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			226	34	476	0	ENST00000534358.1:c.4882A>G	p.Thr1628Ala	p.T1628A	ENST00000534358	NM_005933.3	1628	Act/Gct																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118363934	118363934	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			128	29	342	0	ENST00000534358.1:c.5167T>C	p.Tyr1723His	p.Y1723H	ENST00000534358	NM_005933.3	1723	Tac/Cac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375915	118375915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			178	74	582	0	ENST00000534358.1:c.9313del	p.Ile3105SerfsTer3	p.I3105Sfs*3	ENST00000534358	NM_005933.3	3103	cAa/ca																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376934	118376934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201345346		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			235	32	615	0	ENST00000534358.1:c.10327G>A	p.Ala3443Thr	p.A3443T	ENST00000534358	NM_005933.3	3443	Gct/Act																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641478	18641478	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			183	14	403	0	ENST00000266497.5:c.2477A>T	p.Asp826Val	p.D826V	ENST00000266497		826	gAt/gTt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793465	18793465	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			129	77	368	0	ENST00000266497.5:c.4162A>G	p.Thr1388Ala	p.T1388A	ENST00000266497		1388	Acg/Gcg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21628427	21628428	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			152	22	378	0	ENST00000421138.2:c.1190dup	p.Asn397LysfsTer13	p.N397Kfs*13	ENST00000421138		397	aat/aaAt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245046	46245046	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1043894371		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			320	22	592	0	ENST00000334344.6:c.3140C>T	p.Ala1047Val	p.A1047V	ENST00000334344	NM_152641.2	1047	gCa/gTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49418421	49418421	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			140	97	553	0	ENST00000301067.7:c.15992T>C	p.Leu5331Pro	p.L5331P	ENST00000301067	NM_003482.3	5331	cTc/cCc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421026	49421026	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753795039		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			140	66	487	0	ENST00000301067.7:c.14723C>T	p.Ala4908Val	p.A4908V	ENST00000301067	NM_003482.3	4908	gCc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425389	49425389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			153	59	573	0	ENST00000301067.7:c.13099G>A	p.Asp4367Asn	p.D4367N	ENST00000301067	NM_003482.3	4367	Gat/Aat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440470	49440470	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			261	14	546	0	ENST00000301067.7:c.4340A>G	p.Asp1447Gly	p.D1447G	ENST00000301067	NM_003482.3	1447	gAc/gGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441786	49441786	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			202	15	412	0	ENST00000301067.7:c.4198T>C	p.Cys1400Arg	p.C1400R	ENST00000301067	NM_003482.3	1400	Tgc/Cgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445730	49445730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			188	111	761	0	ENST00000301067.7:c.1736C>T	p.Ser579Leu	p.S579L	ENST00000301067	NM_003482.3	579	tCa/tTa																																																																															
CDK4	1019	MSKCC	GRCh37	12	58142391	58142391	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs767343306		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			208	112	434	0	ENST00000257904.6:c.829A>G	p.Thr277Ala	p.T277A	ENST00000257904	NM_000075.3	277	Act/Gct																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109888	115109888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			140	65	537	0	ENST00000257566.3:c.1990G>A	p.Ala664Thr	p.A664T	ENST00000257566	NM_016569.3	664	Gcg/Acg																																																																															
MSI1	4440	MSKCC	GRCh37	12	120806642	120806642	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			188	59	821	0	ENST00000257552.2:c.94A>G	p.Thr32Ala	p.T32A	ENST00000257552	NM_002442.3	32	Acg/Gcg																																																																															
MSI1	4440	MSKCC	GRCh37	12	120806666	120806666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			217	26	801	0	ENST00000257552.2:c.70A>G	p.Ile24Val	p.I24V	ENST00000257552	NM_002442.3	24	Atc/Gtc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121435295	121435295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			131	78	559	0	ENST00000257555.6:c.1328C>T	p.Ala443Val	p.A443V	ENST00000257555		443	gCa/gTa																																																																															
POLE	5426	MSKCC	GRCh37	12	133220076	133220076	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			193	34	597	0	ENST00000320574.5:c.4361A>G	p.His1454Arg	p.H1454R	ENST00000320574	NM_006231.2	1454	cAc/cGc																																																																															
POLE	5426	MSKCC	GRCh37	12	133238214	133238214	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	68	454	0	ENST00000320574.5:c.2763C>G	p.Tyr921Ter	p.Y921*	ENST00000320574	NM_006231.2	921	taC/taG																																																																															
POLE	5426	MSKCC	GRCh37	12	133238248	133238248	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			141	56	402	0	ENST00000320574.5:c.2729A>G	p.Tyr910Cys	p.Y910C	ENST00000320574	NM_006231.2	910	tAc/tGc																																																																															
POLE	5426	MSKCC	GRCh37	12	133249835	133249835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	51	481	0	ENST00000320574.5:c.1388C>T	p.Ala463Val	p.A463V	ENST00000320574	NM_006231.2	463	gCt/gTt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557807	21557807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			148	90	559	0	ENST00000382592.4:c.2038G>A	p.Gly680Arg	p.G680R	ENST00000382592	NM_014572.2	680	Gga/Aga																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008006	29008006	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			127	69	496	0	ENST00000282397.4:c.763A>G	p.Thr255Ala	p.T255A	ENST00000282397	NM_002019.4	255	Acc/Gcc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910734	32910734	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			233	18	487	0	ENST00000380152.3:c.2242T>C	p.Tyr748His	p.Y748H	ENST00000380152		748	Tac/Cac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911637	32911637	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			178	44	449	0	ENST00000380152.3:c.3145A>G	p.Asn1049Asp	p.N1049D	ENST00000380152		1049	Aat/Gat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914989	32914989	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786202572		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			262	14	464	0	ENST00000380152.3:c.6497T>C	p.Val2166Ala	p.V2166A	ENST00000380152		2166	gTa/gCa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972450	32972450	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1323152399		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			290	17	524	0	ENST00000380152.3:c.9800A>G	p.Lys3267Arg	p.K3267R	ENST00000380152		3267	aAg/aGg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434643	110434643	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			209	28	526	0	ENST00000375856.3:c.3758A>G	p.Tyr1253Cys	p.Y1253C	ENST00000375856	NM_003749.2	1253	tAc/tGc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436720	110436720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			226	12	591	0	ENST00000375856.3:c.1681G>A	p.Gly561Arg	p.G561R	ENST00000375856	NM_003749.2	561	Ggg/Agg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436896	110436896	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			207	38	610	0	ENST00000375856.3:c.1505A>G	p.Glu502Gly	p.E502G	ENST00000375856	NM_003749.2	502	gAg/gGg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437092	110437092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			155	71	492	0	ENST00000375856.3:c.1309C>T	p.His437Tyr	p.H437Y	ENST00000375856	NM_003749.2	437	Cac/Tac																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437182	110437182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			120	30	320	0	ENST00000375856.3:c.1219G>A	p.Gly407Ser	p.G407S	ENST00000375856	NM_003749.2	407	Ggc/Agc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437290	110437290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			80	10	248	0	ENST00000375856.3:c.1111G>A	p.Ala371Thr	p.A371T	ENST00000375856	NM_003749.2	371	Gcg/Acg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066736	30066736	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			117	74	459	0	ENST00000331968.5:c.2395A>G	p.Met799Val	p.M799V	ENST00000331968	NM_002742.2	799	Atg/Gtg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107990	30107990	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			207	21	425	0	ENST00000331968.5:c.817T>C	p.Phe273Leu	p.F273L	ENST00000331968	NM_002742.2	273	Ttt/Ctt																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872368	35872368	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs780823092		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			167	115	550	0	ENST00000216797.5:c.535A>G	p.Thr179Ala	p.T179A	ENST00000216797	NM_020529.2	179	Acc/Gcc																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872460	35872461	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			218	96	521	0	ENST00000216797.5:c.442dup	p.Leu148ProfsTer6	p.L148Pfs*6	ENST00000216797	NM_020529.2	148	cta/cCta																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986691	36986691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			145	20	548	1	ENST00000354822.5:c.998C>T	p.Ala333Val	p.A333V	ENST00000354822	NM_001079668.2	333	gCc/gTc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986824	36986824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			137	75	543	0	ENST00000354822.5:c.865G>A	p.Ala289Thr	p.A289T	ENST00000354822	NM_001079668.2	289	Gcg/Acg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987121	36987121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			114	81	496	0	ENST00000354822.5:c.568C>T	p.Pro190Ser	p.P190S	ENST00000354822	NM_001079668.2	190	Ccg/Tcg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610380	81610380	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			140	94	520	0	ENST00000298171.2:c.1978A>G	p.Lys660Glu	p.K660E	ENST00000298171	NM_000369.2	660	Aaa/Gaa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95556864	95556864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			147	26	268	0	ENST00000343455.3:c.5740G>A	p.Ala1914Thr	p.A1914T	ENST00000343455	NM_177438.2	1914	Gct/Act																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570368	95570368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			140	87	457	0	ENST00000343455.3:c.3365G>A	p.Cys1122Tyr	p.C1122Y	ENST00000343455	NM_177438.2	1122	tGt/tAt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95595843	95595843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			147	60	352	0	ENST00000343455.3:c.700G>A	p.Ala234Thr	p.A234T	ENST00000343455	NM_177438.2	234	Gct/Act																																																																															
DICER1	23405	MSKCC	GRCh37	14	95598954	95598954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			223	39	387	0	ENST00000343455.3:c.205G>A	p.Gly69Arg	p.G69R	ENST00000343455	NM_177438.2	69	Ggg/Agg																																																																															
AKT1	207	MSKCC	GRCh37	14	105243024	105243024	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			99	83	512	0	ENST00000349310.3:c.259A>G	p.Thr87Ala	p.T87A	ENST00000349310	NM_001014432.1	87	Acc/Gcc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38591684	38591684	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			202	13	377	0	ENST00000299084.4:c.143C>A	p.Pro48His	p.P48H	ENST00000299084	NM_152594.2	48	cCt/cAt																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38591735	38591735	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			86	103	328	0	ENST00000299084.4:c.194T>C	p.Leu65Pro	p.L65P	ENST00000299084	NM_152594.2	65	cTc/cCc																																																																															
MGA	23269	MSKCC	GRCh37	15	41999941	41999941	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			76	73	367	0	ENST00000219905.7:c.2204A>G	p.Asn735Ser	p.N735S	ENST00000219905	NM_001164273.1	735	aAt/aGt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43707859	43707859	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			293	20	509	0	ENST00000382044.4:c.5022del	p.Lys1674AsnfsTer21	p.K1674Nfs*21	ENST00000382044	NM_001141980.1	1674	aaA/aa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43708452	43708452	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			178	15	466	0	ENST00000382044.4:c.4844C>A	p.Pro1615His	p.P1615H	ENST00000382044	NM_001141980.1	1615	cCt/cAt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724508	43724508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			273	17	595	0	ENST00000382044.4:c.3559A>G	p.Thr1187Ala	p.T1187A	ENST00000382044	NM_001141980.1	1187	Acc/Gcc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43784537	43784537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			226	12	461	0	ENST00000382044.4:c.137G>A	p.Ser46Asn	p.S46N	ENST00000382044	NM_001141980.1	46	aGt/aAt																																																																															
USP8	9101	MSKCC	GRCh37	15	50785010	50785010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			66	17	224	0	ENST00000307179.4:c.2347G>A	p.Gly783Arg	p.G783R	ENST00000307179		783	Gga/Aga																																																																															
USP8	9101	MSKCC	GRCh37	15	50788253	50788253	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			187	17	358	0	ENST00000307179.4:c.2867T>C	p.Leu956Pro	p.L956P	ENST00000307179		956	cTa/cCa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479801	67479801	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			184	19	454	0	ENST00000327367.4:c.1108T>C	p.Cys370Arg	p.C370R	ENST00000327367	NM_005902.3	370	Tgc/Cgc																																																																															
CD276	80381	MSKCC	GRCh37	15	73996784	73996784	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			76	89	388	0	ENST00000318443.5:c.1340A>G	p.Gln447Arg	p.Q447R	ENST00000318443	NM_001024736.1	447	cAg/cGg																																																																															
BLM	641	MSKCC	GRCh37	15	91354516	91354516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			215	14	490	0	ENST00000355112.3:c.3956T>C	p.Ile1319Thr	p.I1319T	ENST00000355112	NM_000057.2	1319	aTa/aCa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396794	396794	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			122	76	653	0	ENST00000262320.3:c.232C>A	p.Pro78Thr	p.P78T	ENST00000262320	NM_003502.3	78	Ccc/Acc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121619	2121619	+	splice_donor_variant	Splice_Site	SNP	T	T	C	rs397515247		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			117	80	489	0	ENST00000219476.3:c.1946+2T>C		p.X649_splice	ENST00000219476	NM_000548.3	649																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3779113	3779113	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			134	74	555	0	ENST00000262367.5:c.5935A>G	p.Asn1979Asp	p.N1979D	ENST00000262367	NM_004380.2	1979	Aac/Gac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900561	3900561	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758740001		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			177	11	582	0	ENST00000262367.5:c.535G>A	p.Ala179Thr	p.A179T	ENST00000262367	NM_004380.2	179	Gct/Act																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862782	9862782	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			120	49	439	0	ENST00000330684.3:c.2521T>G	p.Phe841Val	p.F841V	ENST00000330684	NM_001134407.1	841	Ttc/Gtc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029261	14029261	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			311	28	500	0	ENST00000311895.7:c.1472A>G	p.Lys491Arg	p.K491R	ENST00000311895	NM_005236.2	491	aAg/aGg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23637621	23637621	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			214	13	391	0	ENST00000261584.4:c.2684T>C	p.Val895Ala	p.V895A	ENST00000261584	NM_024675.3	895	gTt/gCt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646645	23646645	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			123	101	464	0	ENST00000261584.4:c.1222T>C	p.Tyr408His	p.Y408H	ENST00000261584	NM_024675.3	408	Tat/Cat																																																																															
CYLD	1540	MSKCC	GRCh37	16	50785551	50785551	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			266	22	396	0	ENST00000398568.2:c.541T>C	p.Tyr181His	p.Y181H	ENST00000398568	NM_001042412.1	181	Tac/Cac																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868350	56868350	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201617246		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			160	74	445	0	ENST00000308159.5:c.1733G>A	p.Arg578Gln	p.R578Q	ENST00000308159	NM_014669.4	578	cGa/cAa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67662433	67662433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			200	92	499	0	ENST00000264010.4:c.1679G>A	p.Cys560Tyr	p.C560Y	ENST00000264010	NM_006565.3	560	tGt/tAt																																																																															
CDH1	999	MSKCC	GRCh37	16	68846101	68846101	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			235	35	474	0	ENST00000261769.5:c.1072A>G	p.Thr358Ala	p.T358A	ENST00000261769	NM_004360.3	358	Aca/Gca																																																																															
CDH1	999	MSKCC	GRCh37	16	68849476	68849476	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			168	118	511	0	ENST00000261769.5:c.1379T>C	p.Val460Ala	p.V460A	ENST00000261769	NM_004360.3	460	gTa/gCa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831243	72831243	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			124	70	569	0	ENST00000268489.5:c.5338T>C	p.Phe1780Leu	p.F1780L	ENST00000268489	NM_006885.3	1780	Ttc/Ctc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81934317	81934317	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			149	106	476	0	ENST00000359376.3:c.1294A>T	p.Lys432Ter	p.K432*	ENST00000359376	NM_002661.3	432	Aag/Tag																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544903	86544903	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			95	51	463	0	ENST00000262426.4:c.728T>C	p.Val243Ala	p.V243A	ENST00000262426	NM_001451.2	243	gTg/gCg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346690	89346690	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1209672608		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			138	72	677	0	ENST00000301030.4:c.6260C>T	p.Ala2087Val	p.A2087V	ENST00000301030	NM_001256183.1	2087	gCc/gTc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346852	89346852	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			96	75	659	0	ENST00000301030.4:c.6098G>T	p.Gly2033Val	p.G2033V	ENST00000301030	NM_001256183.1	2033	gGg/gTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349370	89349370	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1343719367		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			266	21	557	0	ENST00000301030.4:c.3580G>A	p.Gly1194Arg	p.G1194R	ENST00000301030	NM_001256183.1	1194	Ggg/Agg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351688	89351688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			234	18	495	0	ENST00000301030.4:c.1262G>T	p.Gly421Val	p.G421V	ENST00000301030	NM_001256183.1	421	gGg/gTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89815177	89815177	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			194	11	315	0	ENST00000389301.3:c.3240-2A>G		p.X1080_splice	ENST00000389301	NM_000135.2	1080																																																																																
GPS2	2874	MSKCC	GRCh37	17	7216385	7216385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	121	560	0	ENST00000380728.2:c.863C>T	p.Ser288Phe	p.S288F	ENST00000380728		288	tCc/tTc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7980024	7980024	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			203	83	487	0	ENST00000319144.4:c.1313A>G	p.Asn438Ser	p.N438S	ENST00000319144	NM_001139.2	438	aAc/aGc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004619	16004619	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			151	87	554	0	ENST00000268712.3:c.2635T>C	p.Ser879Pro	p.S879P	ENST00000268712	NM_006311.3	879	Tcc/Ccc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16022764	16022764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			215	60	360	0	ENST00000268712.3:c.1888G>A	p.Glu630Lys	p.E630K	ENST00000268712	NM_006311.3	630	Gaa/Aaa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17127346	17127346	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			218	26	527	0	ENST00000285071.4:c.508T>C	p.Tyr170His	p.Y170H	ENST00000285071	NM_144997.5	170	Tac/Cac																																																																															
NF1	4763	MSKCC	GRCh37	17	29550500	29550500	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1327101856		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			173	43	324	0	ENST00000358273.4:c.1760G>A	p.Ser587Asn	p.S587N	ENST00000358273	NM_001042492.2	587	aGt/aAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29552116	29552116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1131691135		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			214	14	293	0	ENST00000358273.4:c.1849G>A	p.Ala617Thr	p.A617T	ENST00000358273	NM_001042492.2	617	Gca/Aca																																																																															
NF1	4763	MSKCC	GRCh37	17	29657370	29657370	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	94	477	0	ENST00000358273.4:c.5666A>G	p.Glu1889Gly	p.E1889G	ENST00000358273	NM_001042492.2	1889	gAg/gGg																																																																															
NF1	4763	MSKCC	GRCh37	17	29663684	29663684	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			203	16	439	0	ENST00000358273.4:c.6179A>G	p.Lys2060Arg	p.K2060R	ENST00000358273	NM_001042492.2	2060	aAg/aGg																																																																															
NF1	4763	MSKCC	GRCh37	17	29679298	29679298	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			186	10	378	0	ENST00000358273.4:c.7481G>T	p.Trp2494Leu	p.W2494L	ENST00000358273	NM_001042492.2	2494	tGg/tTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29701037	29701037	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			252	35	421	0	ENST00000358273.4:c.8384A>G	p.Asp2795Gly	p.D2795G	ENST00000358273	NM_001042492.2	2795	gAc/gGc																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690649	33690651	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs1212994607		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			237	13	535	0	ENST00000308377.4:c.176_178del	p.Gly59del	p.G59del	ENST00000308377	NM_152270.3	59	gGAGtg/gtg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881003	37881003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			179	125	649	0	ENST00000269571.5:c.2332G>A	p.Gly778Ser	p.G778S	ENST00000269571		778	Ggc/Agc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883654	37883654	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1470001386		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			124	103	644	0	ENST00000269571.5:c.3266A>G	p.Asp1089Gly	p.D1089G	ENST00000269571		1089	gAc/gGc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243652	41243652	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660866		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			243	17	576	0	ENST00000357654.3:c.3896A>G	p.Gln1299Arg	p.Q1299R	ENST00000357654	NM_007294.3	1299	cAg/cGg																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804202	46804202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			230	30	527	0	ENST00000290295.7:c.805G>A	p.Val269Ile	p.V269I	ENST00000290295	NM_006361.5	269	Gtc/Atc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436086	56436086	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			176	93	640	0	ENST00000407977.2:c.1051T>C	p.Tyr351His	p.Y351H	ENST00000407977		351	Tac/Cac																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56780607	56780607	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			164	92	342	0	ENST00000337432.4:c.622A>T	p.Ile208Phe	p.I208F	ENST00000337432	NM_058216.2	208	Att/Ttt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58700889	58700889	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs867952044		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			200	17	402	0	ENST00000305921.3:c.480G>A	p.Trp160Ter	p.W160*	ENST00000305921	NM_003620.3	160	tgG/tgA																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59858313	59858313	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			275	20	387	0	ENST00000259008.2:c.1682A>G	p.Gln561Arg	p.Q561R	ENST00000259008	NM_032043.2	561	cAg/cGg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59871001	59871001	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			193	76	382	0	ENST00000259008.2:c.1430T>C	p.Leu477Ser	p.L477S	ENST00000259008	NM_032043.2	477	tTa/tCa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59878696	59878696	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			208	16	436	0	ENST00000259008.2:c.1058A>G	p.Tyr353Cys	p.Y353C	ENST00000259008	NM_032043.2	353	tAc/tGc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534319	63534319	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	35	662	2	ENST00000307078.5:c.1200+2T>C		p.X400_splice	ENST00000307078	NM_004655.3	400																																																																																
H3F3B	3021	MSKCC	GRCh37	17	73774800	73774800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	14	541	0	ENST00000254810.4:c.287C>T	p.Ala96Val	p.A96V	ENST00000254810	NM_005324.3	96	gCt/gTt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78933887	78933887	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			139	61	543	0	ENST00000306801.3:c.3487A>G	p.Thr1163Ala	p.T1163A	ENST00000306801	NM_020761.2	1163	Acg/Gcg																																																																															
YES1	7525	MSKCC	GRCh37	18	756611	756611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			146	90	463	0	ENST00000314574.4:c.217G>A	p.Gly73Ser	p.G73S	ENST00000314574	NM_005433.3	73	Ggt/Agt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39584492	39584492	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			277	21	390	0	ENST00000262039.4:c.1157A>G	p.Gln386Arg	p.Q386R	ENST00000262039	NM_002647.2	386	cAg/cGg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374937	45374937	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			130	77	396	0	ENST00000262160.6:c.906del	p.Phe302LeufsTer12	p.F302Lfs*12	ENST00000262160	NM_005901.5	302	ttT/tt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375041	45375041	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			155	68	405	0	ENST00000262160.6:c.802T>C	p.Tyr268His	p.Y268H	ENST00000262160	NM_005901.5	268	Tac/Cac																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45396904	45396904	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs756023240		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	23	387	0	ENST00000262160.6:c.268C>A	p.Pro90Thr	p.P90T	ENST00000262160	NM_005901.5	90	Cca/Aca																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593553	48593553	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			146	86	344	0	ENST00000342988.3:c.1304T>A	p.Ile435Lys	p.I435K	ENST00000342988	NM_005359.5	435	aTa/aAa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56401547	56401547	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			183	46	364	0	ENST00000348428.3:c.1409A>G	p.Tyr470Cys	p.Y470C	ENST00000348428	NM_006785.3	470	tAc/tGc																																																																															
STK11	6794	MSKCC	GRCh37	19	1219339	1219339	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			154	86	562	0	ENST00000326873.7:c.391T>C	p.Tyr131His	p.Y131H	ENST00000326873	NM_000455.4	131	Tac/Cac																																																																															
STK11	6794	MSKCC	GRCh37	19	1221213	1221213	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			162	103	512	0	ENST00000326873.7:c.736T>C	p.Tyr246His	p.Y246H	ENST00000326873	NM_000455.4	246	Tac/Cac																																																																															
TCF3	6929	MSKCC	GRCh37	19	1632085	1632085	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			144	90	601	0	ENST00000344749.5:c.250T>C	p.Ser84Pro	p.S84P	ENST00000344749	NM_001136139.2	84	Tcg/Ccg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2206737	2206737	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			270	31	395	0	ENST00000398665.3:c.797T>C	p.Ile266Thr	p.I266T	ENST00000398665	NM_032482.2	266	aTc/aCc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4101254	4101254	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			112	65	532	0	ENST00000262948.5:c.553C>T	p.Arg185Ter	p.R185*	ENST00000262948	NM_030662.3	185	Cga/Tga																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4102399	4102399	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			109	72	480	0	ENST00000262948.5:c.503A>G	p.Glu168Gly	p.E168G	ENST00000262948	NM_030662.3	168	gAg/gGg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212090	5212090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			132	56	559	0	ENST00000357368.4:c.4941G>T	p.Glu1647Asp	p.E1647D	ENST00000357368	NM_002850.3	1647	gaG/gaT																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212385	5212385	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			142	83	584	0	ENST00000357368.4:c.4732A>G	p.Asn1578Asp	p.N1578D	ENST00000357368	NM_002850.3	1578	Aac/Gac																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5218518	5218518	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			176	11	512	0	ENST00000357368.4:c.3961A>G	p.Thr1321Ala	p.T1321A	ENST00000357368	NM_002850.3	1321	Acc/Gcc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231449	5231449	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376058028		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			168	37	509	0	ENST00000357368.4:c.2027C>T	p.Pro676Leu	p.P676L	ENST00000357368	NM_002850.3	676	cCg/cTg																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222296	6222296	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			139	68	669	0	ENST00000252674.7:c.946C>G	p.Pro316Ala	p.P316A	ENST00000252674	NM_005934.3	316	Ccc/Gcc																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222374	6222374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776978780		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			144	15	412	0	ENST00000252674.7:c.868G>A	p.Ala290Thr	p.A290T	ENST00000252674	NM_005934.3	290	Gcc/Acc																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222503	6222503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			112	69	573	0	ENST00000252674.7:c.739C>T	p.Pro247Ser	p.P247S	ENST00000252674	NM_005934.3	247	Ccc/Tcc																																																																															
INSR	3643	MSKCC	GRCh37	19	7174665	7174665	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1333839544		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			110	83	456	0	ENST00000302850.5:c.1052T>C	p.Val351Ala	p.V351A	ENST00000302850	NM_000208.2	351	gTg/gCg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600342	10600342	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1280948756		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			241	21	525	0	ENST00000171111.5:c.1513A>G	p.Thr505Ala	p.T505A	ENST00000171111	NM_203500.1	505	Acc/Gcc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11019819	11019819	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			219	72	541	0	ENST00000327064.4:c.494A>G	p.Asp165Gly	p.D165G	ENST00000327064	NM_199141.1	165	gAc/gGc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11019825	11019825	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			270	25	539	0	ENST00000327064.4:c.500T>C	p.Val167Ala	p.V167A	ENST00000327064	NM_199141.1	167	gTg/gCg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170835	11170835	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			161	72	513	0	ENST00000344626.4:c.4883A>G	p.Asp1628Gly	p.D1628G	ENST00000344626	NM_003072.3	1628	gAc/gGc																																																																															
CALR	811	MSKCC	GRCh37	19	13054421	13054421	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs755626585		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	17	516	0	ENST00000316448.5:c.1031A>G	p.Asn344Ser	p.N344S	ENST00000316448	NM_004343.3	344	aAc/aGc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281503	15281503	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			68	89	430	0	ENST00000263388.2:c.4870T>C	p.Tyr1624His	p.Y1624H	ENST00000263388	NM_000435.2	1624	Tac/Cac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285075	15285075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			149	80	540	0	ENST00000263388.2:c.4540G>A	p.Val1514Met	p.V1514M	ENST00000263388	NM_000435.2	1514	Gtg/Atg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292511	15292511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			121	68	583	0	ENST00000263388.2:c.2668G>A	p.Glu890Lys	p.E890K	ENST00000263388	NM_000435.2	890	Gag/Aag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15295104	15295104	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			113	75	450	0	ENST00000263388.2:c.2566+2T>C		p.X856_splice	ENST00000263388	NM_000435.2	856																																																																																
JAK3	3718	MSKCC	GRCh37	19	17950420	17950420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			145	77	409	0	ENST00000458235.1:c.1307G>A	p.Gly436Glu	p.G436E	ENST00000458235	NM_000215.3	436	gGa/gAa																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266795	18266795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			207	15	499	0	ENST00000222254.8:c.106G>A	p.Ala36Thr	p.A36T	ENST00000222254	NM_005027.3	36	Gcg/Acg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18960918	18960919	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			156	79	465	0	ENST00000262803.5:c.497_498del	p.Lys166ArgfsTer36	p.K166Rfs*36	ENST00000262803	NM_002911.3	166	AAa/a																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212372	36212372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			129	104	628	0	ENST00000222270.7:c.2123C>T	p.Ala708Val	p.A708V	ENST00000222270	NM_014727.1	708	gCc/gTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214034	36214034	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1198167982		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			155	81	652	2	ENST00000222270.7:c.2860C>T	p.Pro954Ser	p.P954S	ENST00000222270	NM_014727.1	954	Ccc/Tcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218063	36218063	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			193	14	371	0	ENST00000222270.7:c.4010A>G	p.Tyr1337Cys	p.Y1337C	ENST00000222270	NM_014727.1	1337	tAc/tGc																																																																															
AXL	558	MSKCC	GRCh37	19	41727835	41727835	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			160	47	439	0	ENST00000301178.4:c.460A>G	p.Thr154Ala	p.T154A	ENST00000301178	NM_021913.4	154	Acc/Gcc																																																																															
AXL	558	MSKCC	GRCh37	19	41759544	41759544	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			177	12	469	0	ENST00000301178.4:c.1967T>A	p.Ile656Asn	p.I656N	ENST00000301178	NM_021913.4	656	aTc/aAc																																																																															
AXL	558	MSKCC	GRCh37	19	41762424	41762424	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			217	29	519	0	ENST00000301178.4:c.2104T>C	p.Tyr702His	p.Y702H	ENST00000301178	NM_021913.4	702	Tac/Cac																																																																															
CD79A	973	MSKCC	GRCh37	19	42383254	42383254	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			121	72	536	0	ENST00000221972.3:c.274A>T	p.Ile92Phe	p.I92F	ENST00000221972	NM_021601.3	92	Atc/Ttc																																																																															
CD79A	973	MSKCC	GRCh37	19	42385020	42385020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			172	13	445	0	ENST00000221972.3:c.654A>G	p.Ile218Met	p.I218M	ENST00000221972	NM_021601.3	218	atA/atG																																																																															
CIC	23152	MSKCC	GRCh37	19	42791506	42791506	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			181	78	583	0	ENST00000575354.2:c.487C>G	p.Pro163Ala	p.P163A	ENST00000575354	NM_015125.3	163	Cct/Gct																																																																															
CIC	23152	MSKCC	GRCh37	19	42793051	42793051	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757094817		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			183	41	493	0	ENST00000575354.2:c.943C>T	p.Leu315Phe	p.L315F	ENST00000575354	NM_015125.3	315	Ctc/Ttc																																																																															
CIC	23152	MSKCC	GRCh37	19	42795835	42795835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			187	16	557	1	ENST00000575354.2:c.2824C>A	p.Leu942Met	p.L942M	ENST00000575354	NM_015125.3	942	Ctg/Atg																																																																															
CIC	23152	MSKCC	GRCh37	19	42797123	42797123	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			200	13	674	0	ENST00000575354.2:c.3485A>G	p.Tyr1162Cys	p.Y1162C	ENST00000575354	NM_015125.3	1162	tAc/tGc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912422	50912422	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			109	61	468	0	ENST00000440232.2:c.1936T>C	p.Phe646Leu	p.F646L	ENST00000440232	NM_002691.3	646	Ttt/Ctt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52693393	52693393	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			168	13	496	0	ENST00000322088.6:c.44T>C	p.Val15Ala	p.V15A	ENST00000322088	NM_014225.5	15	gTg/gCg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965790	25965790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			189	46	471	0	ENST00000435504.4:c.3416G>A	p.Arg1139Lys	p.R1139K	ENST00000435504		1139	aGg/aAg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967236	25967236	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			239	20	472	0	ENST00000435504.4:c.1970T>C	p.Leu657Pro	p.L657P	ENST00000435504		657	cTt/cCt																																																																															
ALK	238	MSKCC	GRCh37	2	30143483	30143483	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			76	52	451	0	ENST00000389048.3:c.43T>C	p.Ser15Pro	p.S15P	ENST00000389048	NM_004304.4	15	Tcc/Ccc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213239	39213239	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			167	122	597	0	ENST00000402219.2:c.3728A>G	p.Asp1243Gly	p.D1243G	ENST00000402219	NM_005633.3	1243	gAc/gGc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39216438	39216438	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			207	17	325	0	ENST00000402219.2:c.3364A>T	p.Ile1122Phe	p.I1122F	ENST00000402219	NM_005633.3	1122	Atc/Ttc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281952	39281952	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			129	44	325	0	ENST00000402219.2:c.523A>G	p.Met175Val	p.M175V	ENST00000402219	NM_005633.3	175	Atg/Gtg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46603676	46603676	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			108	79	486	0	ENST00000263734.3:c.1035-2A>G		p.X345_splice	ENST00000263734	NM_001430.4	345																																																																																
MSH2	4436	MSKCC	GRCh37	2	47637368	47637368	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			237	16	461	0	ENST00000233146.2:c.502T>C	p.Ser168Pro	p.S168P	ENST00000233146	NM_000251.2	168	Tcc/Ccc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47643454	47643454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			197	20	355	0	ENST00000233146.2:c.962C>T	p.Thr321Ile	p.T321I	ENST00000233146	NM_000251.2	321	aCt/aTt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47693835	47693835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			170	106	377	0	ENST00000233146.2:c.1549G>A	p.Ala517Thr	p.A517T	ENST00000233146	NM_000251.2	517	Gca/Aca																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010491	48010491	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757957751		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			149	10	528	0	ENST00000234420.5:c.119C>T	p.Ala40Val	p.A40V	ENST00000234420	NM_000179.2	40	gCc/gTc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030619	48030619	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs376452612		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			168	100	540	0	ENST00000234420.5:c.3233T>C	p.Val1078Ala	p.V1078A	ENST00000234420	NM_000179.2	1078	gTa/gCa																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919667	96919667	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			173	75	498	0	ENST00000258439.3:c.596A>G	p.Tyr199Cys	p.Y199C	ENST00000258439	NM_001193304.2	199	tAc/tGc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99149896	99149896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			226	14	430	0	ENST00000074304.5:c.208G>A	p.Val70Met	p.V70M	ENST00000074304	NM_001134224.1	70	Gtg/Atg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99155396	99155396	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			213	22	401	0	ENST00000074304.5:c.622A>G	p.Ile208Val	p.I208V	ENST00000074304	NM_001134224.1	208	Atc/Gtc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99181179	99181179	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			180	62	535	0	ENST00000074304.5:c.2120A>G	p.Tyr707Cys	p.Y707C	ENST00000074304	NM_001134224.1	707	tAc/tGc																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881326	111881326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			201	49	393	0	ENST00000393256.3:c.4G>A	p.Ala2Thr	p.A2T	ENST00000393256	NM_006538.4	2	Gca/Aca																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285297	212285297	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			198	14	363	0	ENST00000342788.4:c.3004A>G	p.Lys1002Glu	p.K1002E	ENST00000342788	NM_005235.2	1002	Aag/Gag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488663	212488663	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			178	108	466	0	ENST00000342788.4:c.2186T>C	p.Phe729Ser	p.F729S	ENST00000342788	NM_005235.2	729	tTt/tCt																																																																															
BARD1	580	MSKCC	GRCh37	2	215634014	215634014	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1406008867		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	55	414	0	ENST00000260947.4:c.1337A>G	p.Tyr446Cys	p.Y446C	ENST00000260947	NM_000465.2	446	tAc/tGc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546551	9546551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			238	51	440	0	ENST00000353224.5:c.1471C>T	p.Leu491Phe	p.L491F	ENST00000353224	NM_177990.2	491	Ctt/Ttt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31388650	31388650	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			168	32	448	0	ENST00000328111.2:c.1915T>C	p.Trp639Arg	p.W639R	ENST00000328111	NM_006892.3	639	Tgg/Cgg																																																																															
SRC	6714	MSKCC	GRCh37	20	36031194	36031194	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			176	49	532	0	ENST00000358208.4:c.1313T>A	p.Leu438His	p.L438H	ENST00000358208		438	cTc/cAc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39726979	39726979	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			181	53	359	0	ENST00000361337.2:c.975+2T>C		p.X325_splice	ENST00000361337	NM_003286.2	325																																																																																
TOP1	7150	MSKCC	GRCh37	20	39750693	39750693	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			89	14	203	0	ENST00000361337.2:c.2093T>C	p.Leu698Ser	p.L698S	ENST00000361337	NM_003286.2	698	tTg/tCg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39751837	39751837	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			147	86	379	0	ENST00000361337.2:c.2198G>A	p.Cys733Tyr	p.C733Y	ENST00000361337	NM_003286.2	733	tGc/tAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40710589	40710589	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			174	62	465	0	ENST00000373198.4:c.4262A>G	p.Asn1421Ser	p.N1421S	ENST00000373198	NM_133170.3	1421	aAc/aGc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733354	40733354	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			164	19	430	0	ENST00000373198.4:c.3452A>T	p.Gln1151Leu	p.Q1151L	ENST00000373198	NM_133170.3	1151	cAa/cTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877340	40877340	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			167	18	447	0	ENST00000373198.4:c.2356A>T	p.Thr786Ser	p.T786S	ENST00000373198	NM_133170.3	786	Acc/Tcc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101013	41101013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			126	39	513	0	ENST00000373198.4:c.1343C>T	p.Thr448Ile	p.T448I	ENST00000373198	NM_133170.3	448	aCc/aTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306515	41306515	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			116	53	383	0	ENST00000373198.4:c.1144A>G	p.Lys382Glu	p.K382E	ENST00000373198	NM_133170.3	382	Aag/Gag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41408936	41408936	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747222234		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			189	18	438	0	ENST00000373198.4:c.490A>G	p.Ile164Val	p.I164V	ENST00000373198	NM_133170.3	164	Ata/Gta																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265098	46265099	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			167	28	543	0	ENST00000371998.3:c.1968_1969insA	p.Ser657IlefsTer41	p.S657Ifs*41	ENST00000371998		656	-/A																																																																															
AURKA	6790	MSKCC	GRCh37	20	54963234	54963234	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			240	15	320	0	ENST00000312783.6:c.20A>G	p.Asn7Ser	p.N7S	ENST00000312783	NM_198436.1	7	aAc/aGc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57470666	57470666	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			217	14	358	0	ENST00000371085.3:c.140-1G>T		p.X47_splice	ENST00000371085	NM_000516.4	47																																																																																
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62290759	62290759	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			39	48	249	0	ENST00000482936.1:c.4C>T	p.Pro2Ser	p.P2S	ENST00000482936		2	Ccc/Tcc																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45651193	45651193	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			262	15	546	0	ENST00000407780.3:c.832A>G	p.Arg278Gly	p.R278G	ENST00000407780	NM_001283052.1	278	Agg/Ggg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21336845	21336845	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			233	22	602	0	ENST00000215739.8:c.185A>G	p.Glu62Gly	p.E62G	ENST00000215739	NM_006767.3	62	gAg/gGg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279962	29279962	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			210	22	516	0	ENST00000544604.2:c.208C>A	p.Pro70Thr	p.P70T	ENST00000544604	NM_001206998.1	70	Cca/Aca																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29442801	29442801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			264	26	521	0	ENST00000544604.2:c.842C>T	p.Ala281Val	p.A281V	ENST00000544604	NM_001206998.1	281	gCc/gTc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12627248	12627248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	90	371	0	ENST00000251849.4:c.1468G>A	p.Ala490Thr	p.A490T	ENST00000251849	NM_002880.3	490	Gca/Aca																																																																															
RAF1	5894	MSKCC	GRCh37	3	12660184	12660184	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1382771046		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			203	60	453	0	ENST00000251849.4:c.37A>G	p.Asn13Asp	p.N13D	ENST00000251849	NM_002880.3	13	Aat/Gat																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686274	30686274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			174	97	422	0	ENST00000359013.4:c.205G>A	p.Ala69Thr	p.A69T	ENST00000359013	NM_001024847.2	69	Gca/Aca																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067284	37067284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876659657		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			203	84	426	0	ENST00000231790.2:c.1195C>T	p.Pro399Ser	p.P399S	ENST00000231790	NM_000249.3	399	Cct/Tct																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267039	41267039	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			186	34	618	1	ENST00000349496.5:c.710T>C	p.Ile237Thr	p.I237T	ENST00000349496	NM_001904.3	237	aTt/aCt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47129607	47129607	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			218	35	418	0	ENST00000409792.3:c.5273T>C	p.Ile1758Thr	p.I1758T	ENST00000409792	NM_014159.6	1758	aTa/aCa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164157	47164157	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs972544011		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			116	73	487	0	ENST00000409792.3:c.1969A>G	p.Lys657Glu	p.K657E	ENST00000409792	NM_014159.6	657	Aaa/Gaa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47205369	47205369	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			162	50	507	1	ENST00000409792.3:c.46T>C	p.Tyr16His	p.Y16H	ENST00000409792	NM_014159.6	16	Tac/Cac																																																																															
RHOA	387	MSKCC	GRCh37	3	49405891	49405891	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			125	106	451	0	ENST00000418115.1:c.247T>C	p.Cys83Arg	p.C83R	ENST00000418115	NM_001664.2	83	Tgt/Cgt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933752	49933752	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			195	22	601	0	ENST00000296474.3:c.2525T>C	p.Leu842Pro	p.L842P	ENST00000296474	NM_002447.2	842	cTg/cCg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936666	49936666	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1164137652		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			175	93	522	0	ENST00000296474.3:c.1261A>G	p.Ser421Gly	p.S421G	ENST00000296474	NM_002447.2	421	Agc/Ggc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52613185	52613185	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			198	28	389	0	ENST00000394830.3:c.3343A>G	p.Asn1115Asp	p.N1115D	ENST00000394830	NM_018313.4	1115	Aat/Gat																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52676045	52676045	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			112	68	309	0	ENST00000394830.3:c.1012C>T	p.Gln338Ter	p.Q338*	ENST00000394830	NM_018313.4	338	Caa/Taa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027054	71027054	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1305946072		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			229	126	615	0	ENST00000318789.4:c.1273A>G	p.Thr425Ala	p.T425A	ENST00000318789	NM_032682.5	425	Aca/Gca																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71050176	71050176	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			170	89	378	0	ENST00000318789.4:c.1009A>G	p.Ser337Gly	p.S337G	ENST00000318789	NM_032682.5	337	Agt/Ggt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71090685	71090685	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs748852102		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			183	56	385	0	ENST00000318789.4:c.665-2A>G		p.X222_splice	ENST00000318789	NM_032682.5	222																																																																																
RYBP	23429	MSKCC	GRCh37	3	72428243	72428243	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1482866287		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			164	47	379	0	ENST00000477973.2:c.647A>G	p.Ile217Val	p.I217V	ENST00000477973	NM_012234.5	217	Ata/Gta																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72861942	72861942	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			156	73	389	0	ENST00000325599.8:c.940T>C	p.Trp314Arg	p.W314R	ENST00000325599	NM_018130.2	314	Tgg/Cgg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119582392	119582392	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			286	22	504	0	ENST00000316626.5:c.1009A>G	p.Thr337Ala	p.T337A	ENST00000316626		337	Aca/Gca																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119631604	119631604	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			152	37	337	0	ENST00000316626.5:c.662A>G	p.Tyr221Cys	p.Y221C	ENST00000316626		221	tAc/tGc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200742	128200742	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			130	34	454	0	ENST00000341105.2:c.1063A>G	p.Thr355Ala	p.T355A	ENST00000341105	NM_032638.4	355	Aca/Gca																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413656	138413656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			255	15	402	0	ENST00000289153.2:c.1864T>C	p.Tyr622His	p.Y622H	ENST00000289153	NM_006219.2	622	Tat/Cat																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413718	138413718	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1191168084		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			163	105	344	0	ENST00000289153.2:c.1802T>C	p.Leu601Pro	p.L601P	ENST00000289153	NM_006219.2	601	cTg/cCg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138453607	138453607	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			188	13	364	0	ENST00000289153.2:c.841T>C	p.Phe281Leu	p.F281L	ENST00000289153	NM_006219.2	281	Ttt/Ctt																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664774	138664774	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs757195166		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			90	66	401	0	ENST00000330315.3:c.791T>C	p.Met264Thr	p.M264T	ENST00000330315	NM_023067.3	264	aTg/aCg																																																																															
ATR	545	MSKCC	GRCh37	3	142176501	142176501	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			131	67	334	0	ENST00000350721.4:c.7600A>G	p.Arg2534Gly	p.R2534G	ENST00000350721	NM_001184.3	2534	Aga/Gga																																																																															
ATR	545	MSKCC	GRCh37	3	142183988	142183988	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			144	72	342	0	ENST00000350721.4:c.6992A>G	p.Asp2331Gly	p.D2331G	ENST00000350721	NM_001184.3	2331	gAc/gGc																																																																															
ATR	545	MSKCC	GRCh37	3	142274829	142274829	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			185	18	427	0	ENST00000350721.4:c.2231A>G	p.Asn744Ser	p.N744S	ENST00000350721	NM_001184.3	744	aAc/aGc																																																																															
ATR	545	MSKCC	GRCh37	3	142275397	142275397	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1440130494		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			225	17	344	0	ENST00000350721.4:c.1906T>C	p.Cys636Arg	p.C636R	ENST00000350721	NM_001184.3	636	Tgt/Cgt																																																																															
ATR	545	MSKCC	GRCh37	3	142277553	142277553	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			117	47	313	0	ENST00000350721.4:c.1798T>C	p.Tyr600His	p.Y600H	ENST00000350721	NM_001184.3	600	Tat/Cat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922325	178922325	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			88	51	203	0	ENST00000263967.3:c.1094A>G	p.Glu365Gly	p.E365G	ENST00000263967	NM_006218.2	365	gAa/gGa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146731	185146731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			256	30	478	0	ENST00000265026.3:c.362G>A	p.Ser121Asn	p.S121N	ENST00000265026	NM_004721.4	121	aGc/aAc																																																																															
TP63	8626	MSKCC	GRCh37	3	189456511	189456511	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			213	15	389	0	ENST00000264731.3:c.272T>C	p.Ile91Thr	p.I91T	ENST00000264731	NM_003722.4	91	aTt/aCt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1805507	1805507	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			185	11	509	0	ENST00000260795.2:c.1019T>C	p.Leu340Pro	p.L340P	ENST00000260795		340	cTg/cCg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806594	1806594	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			100	63	551	0	ENST00000260795.2:c.1310T>C	p.Leu437Pro	p.L437P	ENST00000260795		437	cTg/cCg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807183	1807183	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			128	59	599	0	ENST00000260795.2:c.1514T>C	p.Val505Ala	p.V505A	ENST00000260795		505	gTa/gCa																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747832	41747832	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			161	83	419	0	ENST00000226382.2:c.937A>G	p.Met313Val	p.M313V	ENST00000226382	NM_003924.3	313	Atg/Gtg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55130010	55130010	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			142	125	478	0	ENST00000257290.5:c.544T>G	p.Phe182Val	p.F182V	ENST00000257290	NM_006206.4	182	Ttc/Gtc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156651	55156651	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			214	24	518	0	ENST00000257290.5:c.3052T>C	p.Tyr1018His	p.Y1018H	ENST00000257290	NM_006206.4	1018	Tac/Cac																																																																															
REST	5978	MSKCC	GRCh37	4	57796240	57796240	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			147	84	468	0	ENST00000309042.7:c.1216T>C	p.Tyr406His	p.Y406H	ENST00000309042	NM_005612.4	406	Tat/Cat																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230795	66230795	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			112	85	417	0	ENST00000273854.3:c.2176A>G	p.Ser726Gly	p.S726G	ENST00000273854	NM_004439.5	726	Agt/Ggt																																																																															
TET2	54790	MSKCC	GRCh37	4	106157690	106157690	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			137	78	516	0	ENST00000380013.4:c.2591A>G	p.His864Arg	p.H864R	ENST00000380013	NM_001127208.2	864	cAc/cGc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007391	143007391	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs771099857		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			127	68	294	0	ENST00000262992.4:c.2393A>G	p.Glu798Gly	p.E798G	ENST00000262992	NM_001101669.1	798	gAa/gGa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244277	153244277	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	106	412	0	ENST00000281708.4:c.1880T>C	p.Val627Ala	p.V627A	ENST00000281708	NM_033632.3	627	gTg/gCg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247265	153247265	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			213	16	500	0	ENST00000281708.4:c.1537A>G	p.Arg513Gly	p.R513G	ENST00000281708	NM_033632.3	513	Agg/Ggg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517813	187517813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			307	19	526	0	ENST00000441802.2:c.12881G>A	p.Gly4294Glu	p.G4294E	ENST00000441802	NM_005245.3	4294	gGg/gAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521462	187521462	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			201	25	421	0	ENST00000441802.2:c.11693T>C	p.Ile3898Thr	p.I3898T	ENST00000441802	NM_005245.3	3898	aTt/aCt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187527327	187527327	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750465851		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			198	141	487	0	ENST00000441802.2:c.10247G>A	p.Gly3416Asp	p.G3416D	ENST00000441802	NM_005245.3	3416	gGc/gAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540691	187540691	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			263	49	590	1	ENST00000441802.2:c.7049A>G	p.Tyr2350Cys	p.Y2350C	ENST00000441802	NM_005245.3	2350	tAc/tGc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542158	187542158	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs768240166		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			151	76	611	0	ENST00000441802.2:c.5582A>G	p.Tyr1861Cys	p.Y1861C	ENST00000441802	NM_005245.3	1861	tAt/tGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557845	187557845	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1201435849		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			168	114	528	0	ENST00000441802.2:c.3866A>G	p.Tyr1289Cys	p.Y1289C	ENST00000441802	NM_005245.3	1289	tAc/tGc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627844	187627844	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			249	17	533	0	ENST00000441802.2:c.3138T>A	p.Asp1046Glu	p.D1046E	ENST00000441802	NM_005245.3	1046	gaT/gaA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630773	187630773	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			247	29	495	0	ENST00000441802.2:c.209T>C	p.Val70Ala	p.V70A	ENST00000441802	NM_005245.3	70	gTa/gCa																																																																															
TERT	7015	MSKCC	GRCh37	5	1294775	1294775	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	11	626	0	ENST00000310581.5:c.226T>C	p.Cys76Arg	p.C76R	ENST00000310581	NM_198253.2	76	Tgc/Cgc																																																																															
TERT	7015	MSKCC	GRCh37	5	1296327	1296327	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs903282474		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			214	16	523	0				ENST00000310581	NM_198253.2																																																																																	
DROSHA	29102	MSKCC	GRCh37	5	31407018	31407018	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			143	104	382	0	ENST00000344624.3:c.3889A>G	p.Thr1297Ala	p.T1297A	ENST00000344624		1297	Acc/Gcc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31435952	31435952	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			127	56	345	0	ENST00000344624.3:c.2962T>C	p.Phe988Leu	p.F988L	ENST00000344624		988	Ttt/Ctt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31466353	31466353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			184	13	364	0	ENST00000344624.3:c.2402G>A	p.Arg801His	p.R801H	ENST00000344624		801	cGc/cAc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38949988	38949988	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			162	78	487	0	ENST00000357387.3:c.3962A>G	p.Tyr1321Cys	p.Y1321C	ENST00000357387	NM_152756.3	1321	tAc/tGc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38953622	38953622	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1460905289		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			155	84	299	0	ENST00000357387.3:c.2731A>G	p.Thr911Ala	p.T911A	ENST00000357387	NM_152756.3	911	Aca/Gca																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38959328	38959328	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			220	13	403	0	ENST00000357387.3:c.2147T>C	p.Ile716Thr	p.I716T	ENST00000357387	NM_152756.3	716	aTc/aCc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39002703	39002703	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			183	109	400	0	ENST00000357387.3:c.326A>G	p.Tyr109Cys	p.Y109C	ENST00000357387	NM_152756.3	109	tAt/tGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177512	56177512	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs763664981		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			219	12	471	0	ENST00000399503.3:c.2485A>G	p.Thr829Ala	p.T829A	ENST00000399503	NM_005921.1	829	Aca/Gca																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178112	56178112	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			160	90	434	0	ENST00000399503.3:c.3085T>C	p.Phe1029Leu	p.F1029L	ENST00000399503	NM_005921.1	1029	Ttc/Ctc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591094	67591094	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			162	113	436	0	ENST00000274335.5:c.1687A>G	p.Met563Val	p.M563V	ENST00000274335		563	Atg/Gtg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67593335	67593335	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			162	106	549	0	ENST00000274335.5:c.2081T>C	p.Leu694Pro	p.L694P	ENST00000274335		694	cTg/cCg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67593371	67593371	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			194	74	549	0	ENST00000274335.5:c.2117A>G	p.His706Arg	p.H706R	ENST00000274335		706	cAc/cGc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675585	86675585	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372941256		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			184	49	349	0	ENST00000274376.6:c.2521G>A	p.Val841Met	p.V841M	ENST00000274376	NM_002890.2	841	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112164566	112164566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			227	34	348	0	ENST00000257430.4:c.1640T>C	p.Val547Ala	p.V547A	ENST00000257430	NM_000038.5	547	gTt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112176761	112176761	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			205	118	513	0	ENST00000257430.4:c.5470A>G	p.Asn1824Asp	p.N1824D	ENST00000257430	NM_000038.5	1824	Aat/Gat																																																																															
RAD50	10111	MSKCC	GRCh37	5	131893072	131893072	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs775894807		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	15	436	0	ENST00000265335.6:c.56A>G	p.Asp19Gly	p.D19G	ENST00000265335		19	gAc/gGc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131972853	131972853	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			137	85	225	0	ENST00000265335.6:c.3436A>G	p.Ile1146Val	p.I1146V	ENST00000265335		1146	Att/Gtt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460414	149460414	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1325333723		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			138	69	531	0	ENST00000286301.3:c.223A>G	p.Thr75Ala	p.T75A	ENST00000286301	NM_005211.3	75	Acc/Gcc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149504298	149504298	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			171	13	420	0	ENST00000261799.4:c.1904T>C	p.Met635Thr	p.M635T	ENST00000261799	NM_002609.3	635	aTg/aCg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522609	176522609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			171	88	667	0	ENST00000292408.4:c.1706G>A	p.Gly569Asp	p.G569D	ENST00000292408	NM_213647.1	569	gGc/gAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721501	176721501	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			155	114	572	0	ENST00000439151.2:c.7132A>G	p.Thr2378Ala	p.T2378A	ENST00000439151	NM_022455.4	2378	Acc/Gcc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180040047	180040047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			84	39	573	0	ENST00000261937.6:c.3395C>T	p.Thr1132Ile	p.T1132I	ENST00000261937	NM_182925.4	1132	aCa/aTa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180040106	180040107	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			116	49	514	0	ENST00000261937.6:c.3335_3336insT	p.Ser1113LeufsTer10	p.S1113Lfs*10	ENST00000261937	NM_182925.4	1112	gcc/gcTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048147	180048147	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			207	14	562	0	ENST00000261937.6:c.2126T>C	p.Ile709Thr	p.I709T	ENST00000261937	NM_182925.4	709	aTc/aCc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056300	180056300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			150	12	604	0	ENST00000261937.6:c.944G>A	p.Gly315Asp	p.G315D	ENST00000261937	NM_182925.4	315	gGc/gAc																																																																															
E2F3	1871	MSKCC	GRCh37	6	20488438	20488438	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			191	96	437	0	ENST00000346618.3:c.1094A>G	p.Asn365Ser	p.N365S	ENST00000346618	NM_001949.4	365	aAc/aGc																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197365	26197366	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			333	29	688	0	ENST00000356476.2:c.113dup	p.Pro39AlafsTer36	p.P39Afs*36	ENST00000356476		38	aag/aaAg																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225651	26225651	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			311	62	748	0	ENST00000360408.1:c.269T>C	p.Val90Ala	p.V90A	ENST00000360408	NM_003532.2	90	gTg/gCg																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27777927	27777927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			198	116	659	0	ENST00000369163.2:c.76G>A	p.Ala26Thr	p.A26T	ENST00000369163	NM_003536.2	26	Gct/Act																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670901	30670901	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			244	15	530	0	ENST00000376406.3:c.5845T>G	p.Ser1949Ala	p.S1949A	ENST00000376406	NM_014641.2	1949	Tcc/Gcc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798066	32798066	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			153	81	558	0	ENST00000374899.4:c.1613A>G	p.Glu538Gly	p.E538G	ENST00000374899	NM_018833.2	538	gAa/gGa																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815808	32815808	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			188	12	426	0	ENST00000354258.4:c.1808G>T	p.Gly603Val	p.G603V	ENST00000354258	NM_000593.5	603	gGg/gTg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816465	32816465	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			263	15	535	0	ENST00000354258.4:c.1710del	p.Phe570LeufsTer10	p.F570Lfs*10	ENST00000354258	NM_000593.5	570	ttT/tt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979345	93979345	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			198	12	399	0	ENST00000369303.4:c.1483del	p.Thr495ProfsTer11	p.T495Pfs*11	ENST00000369303	NM_004440.3	495	Acc/cc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94128981	94128981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			226	30	407	0	ENST00000369303.4:c.79G>A	p.Ala27Thr	p.A27T	ENST00000369303	NM_004440.3	27	Gcg/Acg																																																																															
SESN1	27244	MSKCC	GRCh37	6	109311968	109311968	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			145	44	409	0	ENST00000436639.2:c.1304A>G	p.Asp435Gly	p.D435G	ENST00000436639	NM_014454.2	435	gAt/gGt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681529	117681529	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752818337		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			152	78	335	0	ENST00000368508.3:c.3421G>A	p.Asp1141Asn	p.D1141N	ENST00000368508	NM_002944.2	1141	Gac/Aac																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137528187	137528187	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	65	352	0	ENST00000367739.4:c.113A>G	p.Glu38Gly	p.E38G	ENST00000367739	NM_000416.2	38	gAa/gGa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196002	138196002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			275	18	462	0	ENST00000237289.4:c.316C>T	p.His106Tyr	p.H106Y	ENST00000237289	NM_001270507.1	106	Cat/Tat																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200251	138200251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			232	32	605	0	ENST00000237289.4:c.1669C>T	p.Pro557Ser	p.P557S	ENST00000237289	NM_001270507.1	557	Cct/Tct																																																																															
LATS1	9113	MSKCC	GRCh37	6	149982963	149982963	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			172	17	462	0	ENST00000253339.5:c.3295T>C	p.Tyr1099His	p.Y1099H	ENST00000253339		1099	Tat/Cat																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157150473	157150473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			113	85	490	0	ENST00000346085.5:c.1655C>A	p.Pro552His	p.P552H	ENST00000346085	NM_020732.3	552	cCt/cAt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157454186	157454186	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			148	88	498	0	ENST00000346085.5:c.2396A>G	p.Asn799Ser	p.N799S	ENST00000346085	NM_020732.3	799	aAc/aGc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962340	2962340	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			146	11	393	1	ENST00000396946.4:c.2197A>G	p.Lys733Glu	p.K733E	ENST00000396946	NM_032415.4	733	Aaa/Gaa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976771	2976773	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			139	62	536	0	ENST00000396946.4:c.1239_1241del	p.Lys413del	p.K413del	ENST00000396946	NM_032415.4	413	aaGAAc/aac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987302	2987302	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			182	39	490	0	ENST00000396946.4:c.127A>G	p.Thr43Ala	p.T43A	ENST00000396946	NM_032415.4	43	Acg/Gcg																																																																															
RAC1	5879	MSKCC	GRCh37	7	6441596	6441596	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			45	40	146	0	ENST00000356142.4:c.443T>C	p.Leu148Pro	p.L148P	ENST00000356142	NM_018890.3	148	cTg/cCg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739741	41739741	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771076354		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			170	74	438	0	ENST00000242208.4:c.232G>A	p.Val78Ile	p.V78I	ENST00000242208	NM_002192.2	78	Gta/Ata																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50358658	50358658	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	22	316	0	ENST00000331340.3:c.1A>G	p.Met1?	p.M1?	ENST00000331340	NM_006060.4	1	Atg/Gtg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444279	50444279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			211	16	507	0	ENST00000331340.3:c.209C>T	p.Ala70Val	p.A70V	ENST00000331340	NM_006060.4	70	gCc/gTc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468051	50468051	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			129	102	589	0	ENST00000331340.3:c.1286A>G	p.Lys429Arg	p.K429R	ENST00000331340	NM_006060.4	429	aAg/aGg																																																																															
HGF	3082	MSKCC	GRCh37	7	81386519	81386519	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			115	72	323	0	ENST00000222390.5:c.468A>G	p.Ile156Met	p.I156M	ENST00000222390	NM_000601.4	156	atA/atG																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509139	106509139	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			185	76	557	0	ENST00000359195.3:c.1133A>G	p.Asp378Gly	p.D378G	ENST00000359195	NM_002649.2	378	gAc/gGc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509249	106509249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			185	57	535	0	ENST00000359195.3:c.1243G>A	p.Glu415Lys	p.E415K	ENST00000359195	NM_002649.2	415	Gag/Aag																																																																															
MET	4233	MSKCC	GRCh37	7	116403197	116403197	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			217	15	459	3	ENST00000397752.3:c.2462del	p.Phe821SerfsTer3	p.F821Sfs*3	ENST00000397752	NM_000245.2	820	Ttt/tt																																																																															
POT1	25913	MSKCC	GRCh37	7	124467361	124467361	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			107	60	309	0	ENST00000357628.3:c.1595-2A>G		p.X532_splice	ENST00000357628	NM_015450.2	532																																																																																
POT1	25913	MSKCC	GRCh37	7	124532361	124532361	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			119	71	360	0	ENST00000357628.3:c.83T>C	p.Val28Ala	p.V28A	ENST00000357628	NM_015450.2	28	gTt/gCt																																																																															
BRAF	673	MSKCC	GRCh37	7	140501314	140501314	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			179	82	312	0	ENST00000288602.6:c.758A>G	p.Lys253Arg	p.K253R	ENST00000288602	NM_004333.4	253	aAg/aGg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148523620	148523620	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			223	92	459	0	ENST00000320356.2:c.833T>C	p.Leu278Ser	p.L278S	ENST00000320356	NM_004456.4	278	tTa/tCa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151850038	151850038	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs1293010761		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			138	118	471	0	ENST00000262189.6:c.12278A>G	p.Asn4093Ser	p.N4093S	ENST00000262189	NM_170606.2	4093	aAc/aGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874883	151874883	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			160	110	495	0	ENST00000262189.6:c.7655A>G	p.Asn2552Ser	p.N2552S	ENST00000262189	NM_170606.2	2552	aAc/aGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879166	151879166	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			171	131	581	0	ENST00000262189.6:c.5779A>G	p.Thr1927Ala	p.T1927A	ENST00000262189	NM_170606.2	1927	Aca/Gca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151917713	151917713	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			45	16	136	0	ENST00000262189.6:c.3607A>G	p.Lys1203Glu	p.K1203E	ENST00000262189	NM_170606.2	1203	Aaa/Gaa																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538774	23538774	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs775112273		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			136	69	415	0	ENST00000380871.4:c.665A>G	p.Tyr222Cys	p.Y222C	ENST00000380871	NM_006167.3	222	tAc/tGc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162891	38162891	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			270	15	440	0	ENST00000317025.8:c.2315A>G	p.Lys772Arg	p.K772R	ENST00000317025	NM_023034.1	772	aAa/aGa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38273420	38273420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			141	82	633	0	ENST00000425967.3:c.1915G>A	p.Ala639Thr	p.A639T	ENST00000425967	NM_001174067.1	639	Gcc/Acc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372046	55372046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			142	100	630	0	ENST00000297316.4:c.736C>A	p.Pro246Thr	p.P246T	ENST00000297316	NM_022454.3	246	Ccg/Acg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965356	68965356	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753574278		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			105	55	404	0	ENST00000288368.4:c.968T>C	p.Ile323Thr	p.I323T	ENST00000288368	NM_024870.2	323	aTt/aCt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68984795	68984795	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			197	14	382	0	ENST00000288368.4:c.1559T>C	p.Leu520Ser	p.L520S	ENST00000288368	NM_024870.2	520	tTa/tCa																																																																															
NBN	4683	MSKCC	GRCh37	8	90958413	90958413	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			142	76	363	0	ENST00000265433.3:c.2025A>G	p.Ile675Met	p.I675M	ENST00000265433	NM_002485.4	675	atA/atG																																																																															
NBN	4683	MSKCC	GRCh37	8	90960050	90960050	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			179	18	275	0	ENST00000265433.3:c.1914+2T>C		p.X638_splice	ENST00000265433	NM_002485.4	638																																																																																
RAD21	5885	MSKCC	GRCh37	8	117864272	117864272	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			126	79	378	0	ENST00000297338.2:c.1385A>G	p.Asn462Ser	p.N462S	ENST00000297338	NM_006265.2	462	aAc/aGc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117866549	117866549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			216	21	408	0	ENST00000297338.2:c.1096A>G	p.Thr366Ala	p.T366A	ENST00000297338	NM_006265.2	366	Aca/Gca																																																																															
MYC	4609	MSKCC	GRCh37	8	128750572	128750572	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			222	38	474	0	ENST00000377970.2:c.109T>C	p.Tyr37His	p.Y37H	ENST00000377970	NM_002467.4	37	Tat/Cat																																																																															
AGO2	27161	MSKCC	GRCh37	8	141595266	141595266	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			192	17	458	0	ENST00000220592.5:c.167A>G	p.His56Arg	p.H56R	ENST00000220592	NM_012154.3	56	cAt/cGt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145736870	145736870	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			145	103	531	0	ENST00000428558.2:c.3571A>T	p.Ser1191Cys	p.S1191C	ENST00000428558	NM_004260.3	1191	Agc/Tgc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737530	145737530	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1457817755		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			158	70	735	0	ENST00000428558.2:c.3233A>G	p.His1078Arg	p.H1078R	ENST00000428558	NM_004260.3	1078	cAc/cGc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739466	145739466	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1291839407		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			119	79	591	0	ENST00000428558.2:c.1904A>G	p.His635Arg	p.H635R	ENST00000428558	NM_004260.3	635	cAc/cGc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739713	145739713	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			98	93	579	0	ENST00000428558.2:c.1738A>G	p.Thr580Ala	p.T580A	ENST00000428558	NM_004260.3	580	Aca/Gca																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741655	145741655	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			117	78	593	0	ENST00000428558.2:c.848G>T	p.Gly283Val	p.G283V	ENST00000428558	NM_004260.3	283	gGa/gTa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742459	145742459	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			171	44	597	0	ENST00000428558.2:c.329A>C	p.Lys110Thr	p.K110T	ENST00000428558	NM_004260.3	110	aAg/aCg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2077709	2077709	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			227	17	519	0	ENST00000349721.2:c.2117A>C	p.His706Pro	p.H706P	ENST00000349721	NM_003070.3	706	cAt/cCt																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2191343	2191343	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760161604		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			238	81	542	0	ENST00000349721.2:c.4672C>T	p.Pro1558Ser	p.P1558S	ENST00000349721	NM_003070.3	1558	Cca/Tca																																																																															
JAK2	3717	MSKCC	GRCh37	9	5044401	5044401	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			141	11	260	0	ENST00000381652.3:c.351-2A>G		p.X117_splice	ENST00000381652	NM_004972.3	117																																																																																
JAK2	3717	MSKCC	GRCh37	9	5081752	5081752	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			134	95	412	0	ENST00000381652.3:c.2462T>C	p.Met821Thr	p.M821T	ENST00000381652	NM_004972.3	821	aTg/aCg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5123077	5123077	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs752536965		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			147	68	403	0	ENST00000381652.3:c.3133T>C	p.Tyr1045His	p.Y1045H	ENST00000381652	NM_004972.3	1045	Tat/Cat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8436614	8436614	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			176	17	340	0	ENST00000356435.5:c.4064T>C	p.Leu1355Ser	p.L1355S	ENST00000356435		1355	tTg/tCg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521275	8521275	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			121	25	380	0	ENST00000356435.5:c.961+2T>C		p.X321_splice	ENST00000356435		321																																																																																
CDKN2B	1030	MSKCC	GRCh37	9	22006113	22006113	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			195	29	603	0	ENST00000276925.6:c.290T>C	p.Val97Ala	p.V97A	ENST00000276925	NM_004936.3	97	gTg/gCg																																																																															
TEK	7010	MSKCC	GRCh37	9	27157871	27157871	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			176	34	503	0	ENST00000380036.4:c.95T>C	p.Leu32Pro	p.L32P	ENST00000380036	NM_000459.3	32	cTa/cCa																																																																															
TEK	7010	MSKCC	GRCh37	9	27185585	27185585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	33	411	0	ENST00000380036.4:c.1285G>A	p.Val429Met	p.V429M	ENST00000380036	NM_000459.3	429	Gtg/Atg																																																																															
SYK	6850	MSKCC	GRCh37	9	93606383	93606383	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750210254		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			179	43	577	0	ENST00000375746.1:c.203G>A	p.Arg68Gln	p.R68Q	ENST00000375746	NM_001174167.1	68	cGg/cAg																																																																															
FANCC	2176	MSKCC	GRCh37	9	97897653	97897653	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			190	65	367	0	ENST00000289081.3:c.818A>G	p.Glu273Gly	p.E273G	ENST00000289081	NM_000136.2	273	gAa/gGa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211528	98211528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			185	47	474	0	ENST00000331920.6:c.3627G>A	p.Met1209Ile	p.M1209I	ENST00000331920	NM_000264.3	1209	atG/atA																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98268883	98268883	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs878853849		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			168	12	386	0	ENST00000331920.6:c.202-2A>G		p.X68_splice	ENST00000331920	NM_000264.3	68																																																																																
TGFBR1	7046	MSKCC	GRCh37	9	101908861	101908861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			203	43	441	0	ENST00000374994.4:c.1225T>C	p.Trp409Arg	p.W409R	ENST00000374994	NM_004612.2	409	Tgg/Cgg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128434843	128434843	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			139	63	438	0	ENST00000265960.3:c.11T>C	p.Leu4Ser	p.L4S	ENST00000265960	NM_001006617.1	4	tTg/tCg																																																																															
ABL1	25	MSKCC	GRCh37	9	133760417	133760417	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753769452		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			167	14	647	0	ENST00000318560.5:c.2740C>T	p.Pro914Ser	p.P914S	ENST00000318560	NM_005157.4	914	Ccc/Tcc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781472	135781472	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			180	53	488	0	ENST00000298552.3:c.1493T>C	p.Val498Ala	p.V498A	ENST00000298552	NM_001162426.1	498	gTt/gCt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135798870	135798870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			217	19	392	0	ENST00000298552.3:c.373G>A	p.Asp125Asn	p.D125N	ENST00000298552	NM_001162426.1	125	Gac/Aac																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300001	137300001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			176	13	412	0	ENST00000481739.1:c.286T>C	p.Ser96Pro	p.S96P	ENST00000481739	NM_002957.4	96	Tca/Cca																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300818	137300818	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			200	15	544	0	ENST00000481739.1:c.463T>C	p.Cys155Arg	p.C155R	ENST00000481739	NM_002957.4	155	Tgc/Cgc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399176	139399176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			108	78	447	1	ENST00000277541.6:c.4967G>A	p.Gly1656Asp	p.G1656D	ENST00000277541	NM_017617.3	1656	gGc/gAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401017	139401017	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1359369535		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			211	12	538	0	ENST00000277541.6:c.3976T>C	p.Ser1326Pro	p.S1326P	ENST00000277541	NM_017617.3	1326	Tcc/Ccc																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139566397	139566397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			154	12	423	0	ENST00000308874.7:c.656C>T	p.Ala219Val	p.A219V	ENST00000308874		219	gCc/gTc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15821819	15821819	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			156	34	381	0	ENST00000307771.7:c.212T>C	p.Leu71Ser	p.L71S	ENST00000307771	NM_005089.3	71	tTa/tCa																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15838424	15838424	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			157	81	301	0	ENST00000307771.7:c.922A>G	p.Lys308Glu	p.K308E	ENST00000307771	NM_005089.3	308	Aaa/Gaa																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841072	15841072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			258	53	549	0	ENST00000307771.7:c.1156G>A	p.Asp386Asn	p.D386N	ENST00000307771	NM_005089.3	386	Gac/Aac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931645	39931645	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587778093		P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			169	97	477	0	ENST00000378444.4:c.2954A>G	p.Tyr985Cys	p.Y985C	ENST00000378444	NM_001123385.1	985	tAt/tGt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932282	39932282	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			179	86	559	0	ENST00000378444.4:c.2317A>G	p.Thr773Ala	p.T773A	ENST00000378444	NM_001123385.1	773	Acc/Gcc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934243	39934243	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			153	104	542	0	ENST00000378444.4:c.356A>G	p.Asn119Ser	p.N119S	ENST00000378444	NM_001123385.1	119	aAt/aGt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929526	44929526	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	92	447	0	ENST00000377967.4:c.2626A>G	p.Lys876Glu	p.K876E	ENST00000377967	NM_021140.2	876	Aaa/Gaa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44937696	44937696	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			175	59	294	0	ENST00000377967.4:c.2884A>G	p.Asn962Asp	p.N962D	ENST00000377967	NM_021140.2	962	Aat/Gat																																																																															
ARAF	369	MSKCC	GRCh37	X	47428971	47428971	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			139	91	394	0	ENST00000377045.4:c.1334T>C	p.Ile445Thr	p.I445T	ENST00000377045	NM_001654.4	445	aTc/aCc																																																																															
AR	367	MSKCC	GRCh37	X	66905870	66905870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			126	58	366	0	ENST00000374690.3:c.1787G>A	p.Cys596Tyr	p.C596Y	ENST00000374690	NM_000044.3	596	tGc/tAc																																																																															
AR	367	MSKCC	GRCh37	X	66941788	66941788	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			123	46	364	0	ENST00000374690.3:c.2432T>C	p.Leu811Pro	p.L811P	ENST00000374690	NM_000044.3	811	cTg/cCg																																																																															
MED12	9968	MSKCC	GRCh37	X	70339232	70339232	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			184	52	381	0	ENST00000374080.3:c.109A>G	p.Thr37Ala	p.T37A	ENST00000374080		37	Acg/Gcg																																																																															
MED12	9968	MSKCC	GRCh37	X	70339721	70339722	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			181	42	469	0	ENST00000374080.3:c.395dup	p.Val133GlyfsTer6	p.V133Gfs*6	ENST00000374080		130	-/A																																																																															
MED12	9968	MSKCC	GRCh37	X	70345306	70345306	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			200	23	480	0	ENST00000374080.3:c.2332A>G	p.Ile778Val	p.I778V	ENST00000374080		778	Atc/Gtc																																																																															
MED12	9968	MSKCC	GRCh37	X	70347919	70347919	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			169	77	509	0	ENST00000374080.3:c.3158T>C	p.Phe1053Ser	p.F1053S	ENST00000374080		1053	tTt/tCt																																																																															
MED12	9968	MSKCC	GRCh37	X	70357053	70357053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			116	64	600	0	ENST00000374080.3:c.5568C>A	p.Asp1856Glu	p.D1856E	ENST00000374080		1856	gaC/gaA																																																																															
ATRX	546	MSKCC	GRCh37	X	76939682	76939682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			183	58	485	0	ENST00000373344.5:c.1066G>A	p.Ala356Thr	p.A356T	ENST00000373344	NM_000489.3	356	Gca/Aca																																																																															
XIAP	331	MSKCC	GRCh37	X	123020191	123020191	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	17	493	0	ENST00000355640.3:c.679T>C	p.Cys227Arg	p.C227R	ENST00000355640		227	Tgc/Cgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821605	72821606	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACT			P-0069364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			105	77	626	0	ENST00000268489.5:c.10569_10570insAGT	p.Gly3523_Gly3524insSer	p.G3523_G3524insS	ENST00000268489	NM_006885.3	3523	-/AGT																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0069369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	155	471	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581229	48581229	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs377767331		P-0069369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	15	369	0	ENST00000342988.3:c.533C>G	p.Ser178Ter	p.S178*	ENST00000342988	NM_005359.5	178	tCa/tGa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557570	21557570	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756702960		P-0069369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	167	449	0	ENST00000382592.4:c.2275C>T	p.Arg759Trp	p.R759W	ENST00000382592	NM_014572.2	759	Cgg/Tgg																																																																															
SESN3	143686	MSKCC	GRCh37	11	94910925	94910925	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749067368		P-0069369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			41	112	292	0	ENST00000536441.1:c.1205G>A	p.Arg402His	p.R402H	ENST00000536441	NM_144665.3	402	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	97	273	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435856	56435860	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCT	GTGCT	-			P-0069369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	78	581	0	ENST00000407977.2:c.1277_1281del	p.Gln426ProfsTer15	p.Q426Pfs*15	ENST00000407977		426	cAGCAC/c																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46270986	46270986	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	60	314	0	ENST00000371998.3:c.3110T>C	p.Leu1037Pro	p.L1037P	ENST00000371998		1037	cTt/cCt																																																																															
NF1	4763	MSKCC	GRCh37	17	29670040	29670040	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	15	245	0	ENST00000358273.4:c.7076T>C	p.Val2359Ala	p.V2359A	ENST00000358273	NM_001042492.2	2359	gTa/gCa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679841	30679841	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	84	444	0	ENST00000376406.3:c.1878G>C	p.Gln626His	p.Q626H	ENST00000376406	NM_014641.2	626	caG/caC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573389	48573428	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	TTTGATTTAAAAGGAAAAACTTGAACAAATGGACAATATG	TTTGATTTAAAAGGAAAAACTTGAACAAATGGACAATATG	-			P-0069369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	44	284	0	ENST00000342988.3:c.-27_13del		p.*9*	ENST00000342988	NM_005359.5																																																																																	
MTOR	2475	MSKCC	GRCh37	1	11317043	11317043	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	91	461	0	ENST00000361445.4:c.451C>T	p.Arg151Ter	p.R151*	ENST00000361445	NM_004958.3	151	Cga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256435	16256435	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199763346		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	74	531	0	ENST00000375759.3:c.3700G>A	p.Asp1234Asn	p.D1234N	ENST00000375759	NM_015001.2	1234	Gat/Aat																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258605	16258605	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779248361		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	72	529	0	ENST00000375759.3:c.5870G>A	p.Arg1957His	p.R1957H	ENST00000375759	NM_015001.2	1957	cGc/cAc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932352	36932352	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776535279		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	98	522	0	ENST00000361632.4:c.2117C>T	p.Pro706Leu	p.P706L	ENST00000361632		706	cCg/cTg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36940987	36940987	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs928090621		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	63	407	0	ENST00000361632.4:c.352C>T	p.Arg118Cys	p.R118C	ENST00000361632		118	Cgc/Tgc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46531852	46531852	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	65	311	0	ENST00000262741.5:c.496-1G>T		p.X166_splice	ENST00000262741	NM_003629.3	166																																																																																
JAK1	3716	MSKCC	GRCh37	1	65310506	65310506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	73	494	0	ENST00000342505.4:c.2182G>A	p.Asp728Asn	p.D728N	ENST00000342505	NM_002227.2	728	Gac/Aac																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120496243	120496243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782306821		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	57	447	0	ENST00000256646.2:c.2288C>T	p.Ser763Leu	p.S763L	ENST00000256646	NM_024408.3	763	tCg/tTg																																																																															
SDHC	6391	MSKCC	GRCh37	1	161298226	161298226	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs978019587		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	55	293	0	ENST00000367975.2:c.118C>T	p.Arg40Trp	p.R40W	ENST00000367975	NM_003001.3	40	Cgg/Tgg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162725039	162725039	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778072557		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	77	477	2	ENST00000367921.3:c.511G>A	p.Asp171Asn	p.D171N	ENST00000367921	NM_006182.2	171	Gac/Aac																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740216	162740216	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775098890		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	99	475	0	ENST00000367921.3:c.1418G>A	p.Arg473His	p.R473H	ENST00000367921	NM_006182.2	473	cGc/cAc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163297332	163297332	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1292835761		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	38	298	0	ENST00000271452.3:c.178C>T	p.Arg60Ter	p.R60*	ENST00000271452	NM_145697.2	60	Cga/Tga																																																																															
CDC73	79577	MSKCC	GRCh37	1	193091356	193091356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	132	440	0	ENST00000367435.3:c.26G>A	p.Arg9Gln	p.R9Q	ENST00000367435	NM_024529.4	9	cGa/cAa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193099338	193099338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	57	349	0	ENST00000367435.3:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000367435	NM_024529.4	91	cGa/cAa																																																																															
PARP1	142	MSKCC	GRCh37	1	226567661	226567661	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183533639		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	65	454	0	ENST00000366794.5:c.1505C>T	p.Ala502Val	p.A502V	ENST00000366794	NM_001618.3	502	gCg/gTg																																																																															
FH	2271	MSKCC	GRCh37	1	241663891	241663891	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	26	137	0	ENST00000366560.3:c.1237-1G>T		p.X413_splice	ENST00000366560	NM_000143.3	413																																																																																
AKT3	10000	MSKCC	GRCh37	1	243800978	243800978	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	45	382	0	ENST00000263826.5:c.496C>T	p.Arg166Ter	p.R166*	ENST00000263826	NM_005465.4	166	Cga/Tga																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246518359	246518359	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746219350		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	38	352	0	ENST00000388985.4:c.202G>A	p.Ala68Thr	p.A68T	ENST00000388985		68	Gcc/Acc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111532	8111532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	81	376	0	ENST00000346208.3:c.1018G>A	p.Ala340Thr	p.A340T	ENST00000346208		340	Gcc/Acc																																																																															
RET	5979	MSKCC	GRCh37	10	43622039	43622039	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1371891301		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	51	419	0	ENST00000355710.3:c.3056C>T	p.Ala1019Val	p.A1019V	ENST00000355710	NM_020975.4	1019	gCg/gTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70333858	70333858	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	71	493	0	ENST00000373644.4:c.1763G>T	p.Arg588Ile	p.R588I	ENST00000373644	NM_030625.2	588	aGa/aTa																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88681434	88681434	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782496		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	44	246	0	ENST00000372037.3:c.1324C>T	p.Arg442Cys	p.R442C	ENST00000372037	NM_004329.2	442	Cgt/Tgt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264066389		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	64	368	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127996	64127996	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	93	479	0	ENST00000334205.4:c.394T>C	p.Tyr132His	p.Y132H	ENST00000334205	NM_003942.2	132	Tac/Cac																																																																															
EED	8726	MSKCC	GRCh37	11	85989562	85989562	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs767548896		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	50	277	0	ENST00000263360.6:c.1321C>T	p.Arg441Ter	p.R441*	ENST00000263360	NM_003797.3	441	Cga/Tga																																																																															
SESN3	143686	MSKCC	GRCh37	11	94917635	94917635	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	49	397	0	ENST00000536441.1:c.886G>T	p.Glu296Ter	p.E296*	ENST00000536441	NM_144665.3	296	Gaa/Taa																																																																															
YAP1	10413	MSKCC	GRCh37	11	101984923	101984923	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587777249		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	70	327	0	ENST00000282441.5:c.370C>T	p.Arg124Ter	p.R124*	ENST00000282441	NM_001130145.2	124	Cga/Tga																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435524	18435524	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1009436030		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	58	435	0	ENST00000266497.5:c.509G>A	p.Gly170Glu	p.G170E	ENST00000266497		170	gGa/gAa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18443863	18443863	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774001673		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	49	357	0	ENST00000266497.5:c.836C>T	p.Pro279Leu	p.P279L	ENST00000266497		279	cCg/cTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18699296	18699296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	31	354	0	ENST00000266497.5:c.3397G>T	p.Asp1133Tyr	p.D1133Y	ENST00000266497		1133	Gac/Tac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438192	49438192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	64	401	0	ENST00000301067.7:c.5077C>T	p.Arg1693Trp	p.R1693W	ENST00000301067	NM_003482.3	1693	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445934	49445934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	101	593	0	ENST00000301067.7:c.1532C>T	p.Pro511Leu	p.P511L	ENST00000301067	NM_003482.3	511	cCt/cTt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56490366	56490366	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	54	458	0	ENST00000267101.3:c.2135T>G	p.Leu712Arg	p.L712R	ENST00000267101	NM_001982.3	712	cTt/cGt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864148	57864148	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766159479		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	68	537	1	ENST00000228682.2:c.1625G>A	p.Arg542His	p.R542H	ENST00000228682	NM_005269.2	542	cGc/cAc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112891035	112891035	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs755619262		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	103	312	0	ENST00000351677.2:c.369G>T	p.Glu123Asp	p.E123D	ENST00000351677	NM_002834.3	123	gaG/gaT																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112569	115112569	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1180836314		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	100	460	1	ENST00000257566.3:c.1171G>A	p.Asp391Asn	p.D391N	ENST00000257566	NM_016569.3	391	Gac/Aac																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800928	120800928	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1337094477		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	67	422	0	ENST00000257552.2:c.320G>A	p.Arg107Gln	p.R107Q	ENST00000257552	NM_002442.3	107	cGa/cAa																																																																															
POLE	5426	MSKCC	GRCh37	12	133218928	133218928	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060500823		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	84	498	0	ENST00000320574.5:c.5008G>A	p.Asp1670Asn	p.D1670N	ENST00000320574	NM_006231.2	1670	Gac/Aac																																																																															
POLE	5426	MSKCC	GRCh37	12	133245468	133245468	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1377657524		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	76	507	0	ENST00000320574.5:c.1852G>A	p.Glu618Lys	p.E618K	ENST00000320574	NM_006231.2	618	Gag/Aag																																																																															
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519945		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	51	476	0	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21555725	21555725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778450722		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	52	475	0	ENST00000382592.4:c.2545C>T	p.Arg849Trp	p.R849W	ENST00000382592	NM_014572.2	849	Cgg/Tgg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26959351	26959351	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	70	305	0	ENST00000381527.3:c.518A>G	p.Asp173Gly	p.D173G	ENST00000381527	NM_001260.1	173	gAc/gGc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29005419	29005419	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55687105		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	86	395	0	ENST00000282397.4:c.842G>A	p.Arg281Gln	p.R281Q	ENST00000282397	NM_002019.4	281	cGa/cAa																																																																															
RB1	5925	MSKCC	GRCh37	13	48941649	48941649	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760787104		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	45	236	0	ENST00000267163.4:c.959G>A	p.Arg320Gln	p.R320Q	ENST00000267163	NM_000321.2	320	cGa/cAa																																																																															
RB1	5925	MSKCC	GRCh37	13	48942686	48942686	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767011440		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	41	287	0	ENST00000267163.4:c.1073G>A	p.Arg358Gln	p.R358Q	ENST00000267163	NM_000321.2	358	cGa/cAa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73347916	73347916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139907646		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	127	340	0	ENST00000377767.4:c.1145G>A	p.Arg382Gln	p.R382Q	ENST00000377767	NM_014953.3	382	cGa/cAa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514595	103514595	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs966111552		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	70	469	0	ENST00000355739.4:c.1096C>T	p.Arg366Ter	p.R366*	ENST00000355739	NM_000123.3	366	Cga/Tga																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515433	103515433	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs189280373		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	56	320	0	ENST00000355739.4:c.1934C>T	p.Ser645Leu	p.S645L	ENST00000355739	NM_000123.3	645	tCg/tTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518106	103518106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759972289		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	22	401	0	ENST00000355739.4:c.2044G>A	p.Glu682Lys	p.E682K	ENST00000355739	NM_000123.3	682	Gaa/Aaa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107713	30107713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1160777726		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	65	459	0	ENST00000331968.5:c.967G>A	p.Glu323Lys	p.E323K	ENST00000331968	NM_002742.2	323	Gaa/Aaa																																																																															
MAX	4149	MSKCC	GRCh37	14	65544702	65544702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	86	504	0	ENST00000358664.4:c.224G>A	p.Arg75Gln	p.R75Q	ENST00000358664	NM_002382.4	75	cGa/cAa																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68352661	68352661	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	64	342	0	ENST00000487270.1:c.528A>C	p.Lys176Asn	p.K176N	ENST00000487270	NM_133509.3	176	aaA/aaC																																																																															
TSHR	7253	MSKCC	GRCh37	14	81574778	81574778	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1186709643		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	46	447	0	ENST00000298171.2:c.674A>G	p.Tyr225Cys	p.Y225C	ENST00000298171	NM_000369.2	225	tAc/tGc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95592973	95592973	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	52	336	0	ENST00000343455.3:c.847G>T	p.Asp283Tyr	p.D283Y	ENST00000343455	NM_177438.2	283	Gat/Tat																																																																															
DICER1	23405	MSKCC	GRCh37	14	95595941	95595941	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749484792		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	50	329	0	ENST00000343455.3:c.602G>A	p.Arg201His	p.R201H	ENST00000343455	NM_177438.2	201	cGc/cAc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643719	38643719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	70	426	0	ENST00000299084.4:c.1189G>A	p.Asp397Asn	p.D397N	ENST00000299084	NM_152594.2	397	Gac/Aac																																																																															
MGA	23269	MSKCC	GRCh37	15	42040852	42040852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	80	439	0	ENST00000219905.7:c.5230C>T	p.Pro1744Ser	p.P1744S	ENST00000219905	NM_001164273.1	1744	Cca/Tca																																																																															
MGA	23269	MSKCC	GRCh37	15	42041074	42041074	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	85	491	0	ENST00000219905.7:c.5452C>T	p.Arg1818Ter	p.R1818*	ENST00000219905	NM_001164273.1	1818	Cga/Tga																																																																															
MGA	23269	MSKCC	GRCh37	15	42052629	42052629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	114	410	0	ENST00000219905.7:c.7300C>T	p.Arg2434Trp	p.R2434W	ENST00000219905	NM_001164273.1	2434	Cgg/Tgg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701149	43701149	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756730049		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	81	446	0	ENST00000382044.4:c.5546G>A	p.Arg1849His	p.R1849H	ENST00000382044	NM_001141980.1	1849	cGt/cAt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43739581	43739581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	50	325	0	ENST00000382044.4:c.2819G>T	p.Arg940Ile	p.R940I	ENST00000382044	NM_001141980.1	940	aGa/aTa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748837	43748837	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	72	453	0	ENST00000382044.4:c.1969G>T	p.Glu657Ter	p.E657*	ENST00000382044	NM_001141980.1	657	Gaa/Taa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88670452	88670452	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143617169		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	61	398	0	ENST00000360948.2:c.1234G>A	p.Glu412Lys	p.E412K	ENST00000360948	NM_001012338.2	412	Gaa/Aaa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99442819	99442819	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1365982598		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	50	419	0	ENST00000268035.6:c.1216C>T	p.Arg406Cys	p.R406C	ENST00000268035	NM_000875.3	406	Cgc/Tgc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2098638	2098638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	116	436	0	ENST00000219476.3:c.22G>A	p.Asp8Asn	p.D8N	ENST00000219476	NM_000548.3	8	Gat/Aat																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858517	9858517	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765370528		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	68	477	0	ENST00000330684.3:c.2884G>A	p.Glu962Lys	p.E962K	ENST00000330684	NM_001134407.1	962	Gaa/Aaa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031893	10031893	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	57	450	0	ENST00000330684.3:c.930C>A	p.Phe310Leu	p.F310L	ENST00000330684	NM_001134407.1	310	ttC/ttA																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032120	10032120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	69	437	0	ENST00000330684.3:c.703G>A	p.Glu235Lys	p.E235K	ENST00000330684	NM_001134407.1	235	Gag/Aag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274114	10274114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	68	555	0	ENST00000330684.3:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000330684	NM_001134407.1	52	cGa/cAa																																																																															
CBFB	865	MSKCC	GRCh37	16	67070635	67070635	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753519175		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	30	375	0	ENST00000412916.2:c.259G>A	p.Asp87Asn	p.D87N	ENST00000412916		87	Gac/Aac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830958	72830958	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1393698686		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	79	561	0	ENST00000268489.5:c.5623G>A	p.Glu1875Lys	p.E1875K	ENST00000268489	NM_006885.3	1875	Gaa/Aaa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81888069	81888069	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	53	292	0	ENST00000359376.3:c.214G>T	p.Glu72Ter	p.E72*	ENST00000359376	NM_002661.3	72	Gaa/Taa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942036	81942036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	47	405	0	ENST00000359376.3:c.1573G>A	p.Glu525Lys	p.E525K	ENST00000359376	NM_002661.3	525	Gaa/Aaa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81957133	81957133	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1476399695		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	67	422	0	ENST00000359376.3:c.2351G>A	p.Arg784Gln	p.R784Q	ENST00000359376	NM_002661.3	784	cGa/cAa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81972509	81972509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755617580		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	66	354	0	ENST00000359376.3:c.3302C>T	p.Thr1101Met	p.T1101M	ENST00000359376	NM_002661.3	1101	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778720		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	89	504	0	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979514	7979514	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141010860		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	64	390	0	ENST00000319144.4:c.1511C>T	p.Ala504Val	p.A504V	ENST00000319144	NM_001139.2	504	gCg/gTg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998898	11998898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	46	319	0	ENST00000353533.5:c.400C>T	p.Arg134Trp	p.R134W	ENST00000353533	NM_003010.3	134	Cgg/Tgg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998919	11998919	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	51	351	0	ENST00000353533.5:c.421G>T	p.Glu141Ter	p.E141*	ENST00000353533	NM_003010.3	141	Gaa/Taa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961036	15961036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	55	357	0	ENST00000268712.3:c.6184G>T	p.Asp2062Tyr	p.D2062Y	ENST00000268712	NM_006311.3	2062	Gat/Tat																																																																															
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786202457		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	63	350	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30315354	30315354	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1480541649		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	62	349	0	ENST00000322652.5:c.1039G>A	p.Glu347Lys	p.E347K	ENST00000322652	NM_015355.2	347	Gaa/Aaa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448280	56448280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	113	505	0	ENST00000407977.2:c.367G>A	p.Ala123Thr	p.A123T	ENST00000407977		123	Gct/Act																																																																															
CD79B	974	MSKCC	GRCh37	17	62007156	62007156	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148032848		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	67	504	0	ENST00000392795.3:c.526G>A	p.Val176Met	p.V176M	ENST00000392795	NM_001039933.1	176	Gtg/Atg																																																																															
YES1	7525	MSKCC	GRCh37	18	724435	724435	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	50	378	0	ENST00000314574.4:c.1621G>T	p.Glu541Ter	p.E541*	ENST00000314574	NM_005433.3	541	Gaa/Taa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39570433	39570433	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747825815		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	82	264	0	ENST00000262039.4:c.629G>A	p.Arg210Gln	p.R210Q	ENST00000262039	NM_002647.2	210	cGa/cAa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39609382	39609382	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1463795009		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	67	303	0	ENST00000262039.4:c.1684G>A	p.Glu562Lys	p.E562K	ENST00000262039	NM_002647.2	562	Gaa/Aaa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222221	5222221	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	53	363	1	ENST00000357368.4:c.3114G>T	p.Lys1038Asn	p.K1038N	ENST00000357368	NM_002850.3	1038	aaG/aaT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221489	36221489	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1331677016		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	84	520	0	ENST00000222270.7:c.5248G>A	p.Glu1750Lys	p.E1750K	ENST00000222270	NM_014727.1	1750	Gag/Aag																																																																															
ALK	238	MSKCC	GRCh37	2	29420510	29420510	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	75	363	0	ENST00000389048.3:c.3971C>A	p.Ser1324Tyr	p.S1324Y	ENST00000389048	NM_004304.4	1324	tCt/tAt																																																																															
ALK	238	MSKCC	GRCh37	2	30142901	30142901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1365924896		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	62	527	0	ENST00000389048.3:c.625C>T	p.Arg209Cys	p.R209C	ENST00000389048	NM_004304.4	209	Cgc/Tgc																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67632300	67632300	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	79	346	0	ENST00000272342.5:c.2486C>A	p.Ser829Tyr	p.S829Y	ENST00000272342	NM_019002.3	829	tCt/tAt																																																																															
CASP8	841	MSKCC	GRCh37	2	202151189	202151189	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	41	352	0	ENST00000358485.4:c.1489G>T	p.Asp497Tyr	p.D497Y	ENST00000358485	NM_001080125.1	497	Gat/Tat																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251749	212251749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	87	482	0	ENST00000342788.4:c.3310G>A	p.Asp1104Asn	p.D1104N	ENST00000342788	NM_005235.2	1104	Gac/Aac																																																																															
BARD1	580	MSKCC	GRCh37	2	215617226	215617226	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777937955		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	57	313	0	ENST00000260947.4:c.1622C>T	p.Ser541Leu	p.S541L	ENST00000260947	NM_000465.2	541	tCg/tTg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31388078	31388078	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1477651398		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	66	410	0	ENST00000328111.2:c.1879G>A	p.Asp627Asn	p.D627N	ENST00000328111	NM_006892.3	627	Gac/Aac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770575	40770575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1294592345		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	45	405	0	ENST00000373198.4:c.2807G>A	p.Arg936Gln	p.R936Q	ENST00000373198	NM_133170.3	936	cGa/cAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877444	40877444	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	46	419	0	ENST00000373198.4:c.2252C>A	p.Ser751Tyr	p.S751Y	ENST00000373198	NM_133170.3	751	tCt/tAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944562	40944562	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868189942		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	25	457	0	ENST00000373198.4:c.1940C>T	p.Ser647Leu	p.S647L	ENST00000373198	NM_133170.3	647	tCg/tTg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46256699	46256699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749607074		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	63	321	0	ENST00000371998.3:c.755G>A	p.Arg252His	p.R252H	ENST00000371998		252	cGc/cAc																																																																															
AURKA	6790	MSKCC	GRCh37	20	54959339	54959339	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	43	211	0	ENST00000312783.6:c.361G>T	p.Glu121Ter	p.E121*	ENST00000312783	NM_198436.1	121	Gaa/Taa																																																																															
ERG	2078	MSKCC	GRCh37	21	39755594	39755594	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780042015		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	83	553	0	ENST00000288319.7:c.1171G>A	p.Asp391Asn	p.D391N	ENST00000288319	NM_182918.3	391	Gac/Aac																																																																															
ERG	2078	MSKCC	GRCh37	21	39817460	39817460	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774083516		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	56	428	0	ENST00000288319.7:c.103G>A	p.Ala35Thr	p.A35T	ENST00000288319	NM_182918.3	35	Gcg/Acg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29090026	29090026	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	15	103	0	ENST00000328354.6:c.1455G>A	p.Trp485Ter	p.W485*	ENST00000328354	NM_007194.3	485	tgG/tgA																																																																															
RAC2	5880	MSKCC	GRCh37	22	37627979	37627979	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780585104		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	53	410	0	ENST00000249071.6:c.281G>A	p.Arg94His	p.R94H	ENST00000249071	NM_002872.4	94	cGc/cAc																																																																															
PPARG	5468	MSKCC	GRCh37	3	12393114	12393114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	31	349	0	ENST00000287820.6:c.23C>T	p.Ser8Phe	p.S8F	ENST00000287820	NM_015869.4	8	tCt/tTt																																																																															
RAF1	5894	MSKCC	GRCh37	3	12641905	12641905	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs755926381		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	68	454	0	ENST00000251849.4:c.844C>T	p.Arg282Ter	p.R282*	ENST00000251849	NM_002880.3	282	Cga/Tga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47158162	47158162	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	53	327	0	ENST00000409792.3:c.4537G>T	p.Glu1513Ter	p.E1513*	ENST00000409792	NM_014159.6	1513	Gaa/Taa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164268	47164268	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	61	408	0	ENST00000409792.3:c.1858C>T	p.Arg620Ter	p.R620*	ENST00000409792	NM_014159.6	620	Cga/Tga																																																																															
MST1	4485	MSKCC	GRCh37	3	49725022	49725022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs575861028		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	98	475	0	ENST00000449682.2:c.322C>T	p.Arg108Cys	p.R108C	ENST00000449682	NM_020998.3	108	Cgt/Tgt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138453531	138453531	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372119491		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	59	349	0	ENST00000289153.2:c.917G>A	p.Arg306Gln	p.R306Q	ENST00000289153	NM_006219.2	306	cGa/cAa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138461576	138461576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	41	318	0	ENST00000289153.2:c.445C>T	p.Arg149Ter	p.R149*	ENST00000289153	NM_006219.2	149	Cga/Tga																																																																															
ATR	545	MSKCC	GRCh37	3	142243011	142243011	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	49	354	0	ENST00000350721.4:c.3976G>T	p.Glu1326Ter	p.E1326*	ENST00000350721	NM_001184.3	1326	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917544	178917544	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1382877640		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	62	390	0	ENST00000263967.3:c.419G>A	p.Arg140Gln	p.R140Q	ENST00000263967	NM_006218.2	140	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922301	178922301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	31	229	0	ENST00000263967.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000263967	NM_006218.2	357	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922324	178922324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793732		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	30	230	0	ENST00000263967.3:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000263967	NM_006218.2	365	Gaa/Aaa																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748035	41748035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	35	236	0	ENST00000226382.2:c.734C>T	p.Ala245Val	p.A245V	ENST00000226382	NM_003924.3	245	gCg/gTg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133561	55133561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs958381664		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	57	393	1	ENST00000257290.5:c.865G>A	p.Glu289Lys	p.E289K	ENST00000257290	NM_006206.4	289	Gaa/Aaa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55140786	55140786	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs747156883		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	64	345	0	ENST00000257290.5:c.1647G>A	p.Trp549Ter	p.W549*	ENST00000257290	NM_006206.4	549	tgG/tgA																																																																															
KDR	3791	MSKCC	GRCh37	4	55955615	55955615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	37	334	0	ENST00000263923.4:c.3330G>T	p.Lys1110Asn	p.K1110N	ENST00000263923	NM_002253.2	1110	aaG/aaT																																																																															
KDR	3791	MSKCC	GRCh37	4	55956220	55956220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1190050670		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	54	333	0	ENST00000263923.4:c.3095G>A	p.Arg1032Gln	p.R1032Q	ENST00000263923	NM_002253.2	1032	cGa/cAa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143226689	143226689	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs149208667		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	63	282	0	ENST00000262992.4:c.425G>A	p.Arg142Gln	p.R142Q	ENST00000262992	NM_001101669.1	142	cGa/cAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	111	446	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268137	153268137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752114536		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	66	401	0	ENST00000281708.4:c.671G>A	p.Arg224Gln	p.R224Q	ENST00000281708	NM_033632.3	224	cGa/cAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332918	153332918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1471232420		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	57	424	0	ENST00000281708.4:c.38G>A	p.Arg13Gln	p.R13Q	ENST00000281708	NM_033632.3	13	cGa/cAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542870	187542870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	57	375	0	ENST00000441802.2:c.4870G>T	p.Glu1624Ter	p.E1624*	ENST00000441802	NM_005245.3	1624	Gaa/Taa																																																																															
TERT	7015	MSKCC	GRCh37	5	1279431	1279431	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754809046		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	53	380	0	ENST00000310581.5:c.2105C>T	p.Pro702Leu	p.P702L	ENST00000310581	NM_198253.2	702	cCg/cTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1294420	1294420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	91	571	0	ENST00000310581.5:c.581G>A	p.Arg194Gln	p.R194Q	ENST00000310581	NM_198253.2	194	cGa/cAa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38978751	38978751	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1432686344		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	35	246	0	ENST00000357387.3:c.755G>T	p.Arg252Ile	p.R252I	ENST00000357387	NM_152756.3	252	aGa/aTa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38982057	38982057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	64	374	0	ENST00000357387.3:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000357387	NM_152756.3	222	cGa/cAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161689	56161689	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1490957244		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	57	321	0	ENST00000399503.3:c.1186C>T	p.Arg396Cys	p.R396C	ENST00000399503	NM_005921.1	396	Cgt/Tgt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752845	57752845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	85	397	0	ENST00000274289.3:c.1083G>T	p.Lys361Asn	p.K361N	ENST00000274289	NM_006622.3	361	aaG/aaT																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	48	342	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																															
MSH3	4437	MSKCC	GRCh37	5	79961018	79961018	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	58	413	0	ENST00000265081.6:c.415G>T	p.Glu139Ter	p.E139*	ENST00000265081	NM_002439.4	139	Gaa/Taa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86649005	86649005	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	39	283	0	ENST00000274376.6:c.1285G>T	p.Glu429Ter	p.E429*	ENST00000274376	NM_002890.2	429	Gaa/Taa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685312	86685312	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	63	318	0	ENST00000274376.6:c.3028C>T	p.Arg1010Ter	p.R1010*	ENST00000274376	NM_002890.2	1010	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	51	422	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131915579	131915579	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28903087		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	54	254	0	ENST00000265335.6:c.577C>T	p.Arg193Trp	p.R193W	ENST00000265335		193	Cgg/Tgg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131977992	131977992	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	29	307	0	ENST00000265335.6:c.3875A>G	p.Asn1292Ser	p.N1292S	ENST00000265335		1292	aAc/aGc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518782	176518782	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752817668		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	69	525	0	ENST00000292408.4:c.700C>T	p.Arg234Cys	p.R234C	ENST00000292408	NM_213647.1	234	Cgc/Tgc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166773	32166773	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1231739465		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	81	466	0	ENST00000375023.3:c.4465C>T	p.Arg1489Ter	p.R1489*	ENST00000375023	NM_004557.3	1489	Cga/Tga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169237	32169237	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139941835		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	61	463	0	ENST00000375023.3:c.3796G>A	p.Gly1266Arg	p.G1266R	ENST00000375023	NM_004557.3	1266	Ggg/Agg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93955086	93955086	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	31	315	0	ENST00000369303.4:c.2812G>T	p.Glu938Ter	p.E938*	ENST00000369303	NM_004440.3	938	Gaa/Taa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967820	93967820	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	48	335	1	ENST00000369303.4:c.2107A>G	p.Arg703Gly	p.R703G	ENST00000369303	NM_004440.3	703	Aga/Gga																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979344	93979344	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	39	371	0	ENST00000369303.4:c.1484C>A	p.Thr495Asn	p.T495N	ENST00000369303	NM_004440.3	495	aCc/aAc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066482	94066482	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs542602078		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	79	422	0	ENST00000369303.4:c.1277G>A	p.Arg426Gln	p.R426Q	ENST00000369303	NM_004440.3	426	cGa/cAa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555110	106555110	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141223053		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	90	550	0	ENST00000369096.4:c.2227G>A	p.Glu743Lys	p.E743K	ENST00000369096	NM_001198.3	743	Gag/Aag																																																																															
SESN1	27244	MSKCC	GRCh37	6	109321750	109321750	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1032022376		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	56	366	0	ENST00000436639.2:c.673G>T	p.Glu225Ter	p.E225*	ENST00000436639	NM_014454.2	225	Gaa/Taa																																																																															
FYN	2534	MSKCC	GRCh37	6	112024169	112024169	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1465963577		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	45	351	0	ENST00000368678.4:c.616C>T	p.Arg206Cys	p.R206C	ENST00000368678		206	Cgc/Tgc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117680985	117680985	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771443531		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	58	326	0	ENST00000368508.3:c.3635G>A	p.Arg1212His	p.R1212H	ENST00000368508	NM_002944.2	1212	cGc/cAc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117706936	117706936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	69	358	0	ENST00000368508.3:c.2214G>T	p.Glu738Asp	p.E738D	ENST00000368508	NM_002944.2	738	gaG/gaT																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001523	150001523	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264217871		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	46	402	0	ENST00000253339.5:c.2081G>A	p.Arg694His	p.R694H	ENST00000253339		694	cGt/cAt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099840	157099840	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	70	404	0	ENST00000346085.5:c.777A>C	p.Gln259His	p.Q259H	ENST00000346085	NM_020732.3	259	caA/caC																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157488293	157488293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750810656		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	79	379	0	ENST00000346085.5:c.2999C>T	p.Ala1000Val	p.A1000V	ENST00000346085	NM_020732.3	1000	gCg/gTg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13949266	13949266	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	50	341	0	ENST00000405192.2:c.862A>C	p.Lys288Gln	p.K288Q	ENST00000405192	NM_001163147.1	288	Aaa/Caa																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971370	13971370	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748346103		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	79	415	0	ENST00000405192.2:c.559C>T	p.Arg187Cys	p.R187C	ENST00000405192	NM_001163147.1	187	Cgc/Tgc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739796	41739796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	88	399	0	ENST00000242208.4:c.177G>T	p.Lys59Asn	p.K59N	ENST00000242208	NM_002192.2	59	aaG/aaT																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468285	50468285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	63	452	0	ENST00000331340.3:c.1520C>T	p.Ser507Leu	p.S507L	ENST00000331340	NM_006060.4	507	tCg/tTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259533	55259533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	63	408	0	ENST00000275493.2:c.2591C>T	p.Ala864Val	p.A864V	ENST00000275493	NM_005228.3	864	gCg/gTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509723	106509723	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	57	416	0	ENST00000359195.3:c.1717G>T	p.Glu573Ter	p.E573*	ENST00000359195	NM_002649.2	573	Gaa/Taa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520111	106520111	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	43	269	0	ENST00000359195.3:c.2538+1G>A		p.X846_splice	ENST00000359195	NM_002649.2	846																																																																																
MET	4233	MSKCC	GRCh37	7	116339184	116339184	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	76	365	0	ENST00000397752.3:c.46T>C	p.Phe16Leu	p.F16L	ENST00000397752	NM_000245.2	16	Ttt/Ctt																																																																															
SMO	6608	MSKCC	GRCh37	7	128845086	128845086	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761395599		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	21	450	0	ENST00000249373.3:c.580G>A	p.Glu194Lys	p.E194K	ENST00000249373	NM_005631.4	194	Gaa/Aaa																																																																															
SMO	6608	MSKCC	GRCh37	7	128850885	128850885	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61740964		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	83	382	0	ENST00000249373.3:c.1732G>A	p.Glu578Lys	p.E578K	ENST00000249373	NM_005631.4	578	Gag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860866	151860866	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs924381304		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	74	394	1	ENST00000262189.6:c.9796C>T	p.Arg3266Trp	p.R3266W	ENST00000262189	NM_170606.2	3266	Cgg/Tgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874713	151874713	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	102	469	1	ENST00000262189.6:c.7825C>T	p.Arg2609Ter	p.R2609*	ENST00000262189	NM_170606.2	2609	Cga/Tga																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2161812	2161812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	79	443	0	ENST00000349721.2:c.4108C>T	p.Arg1370Cys	p.R1370C	ENST00000349721	NM_003070.3	1370	Cgc/Tgc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069023	5069023	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs753648225		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	53	363	0	ENST00000381652.3:c.1328G>A	p.Arg443Gln	p.R443Q	ENST00000381652	NM_004972.3	443	cGa/cAa																																																																															
TEK	7010	MSKCC	GRCh37	9	27212762	27212762	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906745		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	78	441	0	ENST00000380036.4:c.2744G>A	p.Arg915His	p.R915H	ENST00000380036	NM_000459.3	915	cGc/cAc																																																																															
TEK	7010	MSKCC	GRCh37	9	27229223	27229223	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369356295		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	46	354	0	ENST00000380036.4:c.3368C>T	p.Ala1123Val	p.A1123V	ENST00000380036	NM_000459.3	1123	gCg/gTg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020640	37020640	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	63	343	0	ENST00000358127.4:c.205C>A	p.Leu69Ile	p.L69I	ENST00000358127	NM_001280556.1	69	Ctt/Att																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020670	37020670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	67	384	0	ENST00000358127.4:c.175C>T	p.Arg59Trp	p.R59W	ENST00000358127	NM_001280556.1	59	Cgg/Tgg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285748	87285748	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1440777069		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	100	504	0	ENST00000277120.3:c.85G>A	p.Ala29Thr	p.A29T	ENST00000277120		29	Gct/Act																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891367	101891367	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	53	370	0	ENST00000374994.4:c.328G>T	p.Glu110Ter	p.E110*	ENST00000374994	NM_004612.2	110	Gaa/Taa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006864	47006864	+	5_prime_UTR_variant	5'UTR	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	85	192	0	ENST00000329236.7:c.-17G>A		p.*6*	ENST00000329236	NM_001204466.1																																																																																	
KDM5C	8242	MSKCC	GRCh37	X	53250079	53250079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	61	207	0	ENST00000375401.3:c.170C>T	p.Ala57Val	p.A57V	ENST00000375401	NM_004187.3	57	gCt/gTt																																																																															
AR	367	MSKCC	GRCh37	X	66765409	66765409	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs865948546		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	77	261	0	ENST00000374690.3:c.421G>A	p.Ala141Thr	p.A141T	ENST00000374690	NM_000044.3	141	Gcc/Acc																																																																															
MED12	9968	MSKCC	GRCh37	X	70348270	70348270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	71	237	0	ENST00000374080.3:c.3334G>A	p.Asp1112Asn	p.D1112N	ENST00000374080		1112	Gat/Aat																																																																															
ATRX	546	MSKCC	GRCh37	X	76764089	76764089	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	56	189	0	ENST00000373344.5:c.7219C>T	p.Arg2407Ter	p.R2407*	ENST00000373344	NM_000489.3	2407	Cga/Tga																																																																															
ATRX	546	MSKCC	GRCh37	X	76938406	76938406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	59	193	0	ENST00000373344.5:c.2342G>A	p.Arg781Gln	p.R781Q	ENST00000373344	NM_000489.3	781	cGa/cAa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123179197	123179197	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	54	145	0	ENST00000218089.9:c.646C>T	p.Arg216Ter	p.R216*	ENST00000218089	NM_001042749.1	216	Cga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255119	16255119	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1194601008		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	75	485	0	ENST00000375759.3:c.2384G>A	p.Arg795Gln	p.R795Q	ENST00000375759	NM_015001.2	795	cGa/cAa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36938140	36938140	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs559297734		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	76	509	0	ENST00000361632.4:c.821G>A	p.Arg274His	p.R274H	ENST00000361632		274	cGt/cAt																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39322629	39322629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1267098530		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	65	436	0	ENST00000373001.3:c.363G>A	p.Met121Ile	p.M121I	ENST00000373001	NM_022157.3	121	atG/atA																																																																															
JAK1	3716	MSKCC	GRCh37	1	65304199	65304199	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	60	396	0	ENST00000342505.4:c.2916G>T	p.Lys972Asn	p.K972N	ENST00000342505	NM_002227.2	972	aaG/aaT																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117712755	117712755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	65	364	0	ENST00000369458.3:c.71C>T	p.Ala24Val	p.A24V	ENST00000369458	NM_024626.3	24	gCa/gTa																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150923562	150923562	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1269300889		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	68	451	0	ENST00000271640.5:c.2209G>A	p.Asp737Asn	p.D737N	ENST00000271640	NM_001145415.1	737	Gac/Aac																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845350	156845350	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	81	684	0	ENST00000524377.1:c.1393T>C	p.Ser465Pro	p.S465P	ENST00000524377	NM_002529.3	465	Tcc/Ccc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176105647	176105647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	42	236	0	ENST00000367669.3:c.868G>A	p.Glu290Lys	p.E290K	ENST00000367669	NM_022457.5	290	Gaa/Aaa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176132987	176132987	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	42	275	0	ENST00000367669.3:c.606A>C	p.Glu202Asp	p.E202D	ENST00000367669	NM_022457.5	202	gaA/gaC																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230492737	230492737	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773389998		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	73	438	0	ENST00000525115.1:c.455G>A	p.Arg152His	p.R152H	ENST00000525115		152	cGc/cAc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243708870	243708871	+	missense_variant	Missense_Mutation	DNP	TC	TC	GA			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	38	252	0	ENST00000263826.5:c.1192_1193inv	p.Glu398Ser	p.E398S	ENST00000263826	NM_005465.4	398	GAa/TCa																																																																															
TET1	80312	MSKCC	GRCh37	10	70333995	70333995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	46	404	0	ENST00000373644.4:c.1900G>A	p.Val634Ile	p.V634I	ENST00000373644	NM_030625.2	634	Gtt/Att																																																																															
TET1	80312	MSKCC	GRCh37	10	70404827	70404827	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	54	363	0	ENST00000373644.4:c.2341G>T	p.Glu781Ter	p.E781*	ENST00000373644	NM_030625.2	781	Gaa/Taa																																																																															
TET1	80312	MSKCC	GRCh37	10	70406337	70406337	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	69	432	0	ENST00000373644.4:c.3851C>A	p.Ser1284Tyr	p.S1284Y	ENST00000373644	NM_030625.2	1284	tCt/tAt																																																																															
SUFU	51684	MSKCC	GRCh37	10	104377082	104377082	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	57	369	0	ENST00000369902.3:c.1193A>C	p.Lys398Thr	p.K398T	ENST00000369902	NM_016169.3	398	aAa/aCa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925567	114925567	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1414332733		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	87	485	2	ENST00000543371.1:c.1645G>A	p.Ala549Thr	p.A549T	ENST00000543371	NM_001198531.1	549	Gcc/Acc																																																																															
CTR9	9646	MSKCC	GRCh37	11	10789683	10789683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	75	380	0	ENST00000361367.2:c.1935G>T	p.Lys645Asn	p.K645N	ENST00000361367	NM_014633.3	645	aaG/aaT																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180592	94180592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	56	364	0	ENST00000323929.3:c.1576G>A	p.Ala526Thr	p.A526T	ENST00000323929	NM_005591.3	526	Gcc/Acc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998399	100998399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	44	413	0	ENST00000325455.5:c.1403C>T	p.Ala468Val	p.A468V	ENST00000325455	NM_001202474.3	468	gCg/gTg																																																																															
ATM	472	MSKCC	GRCh37	11	108098365	108098365	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	56	310	0	ENST00000278616.4:c.14T>G	p.Leu5Arg	p.L5R	ENST00000278616	NM_000051.3	5	cTt/cGt																																																																															
ATM	472	MSKCC	GRCh37	11	108158377	108158377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	60	348	0	ENST00000278616.4:c.4044G>T	p.Leu1348Phe	p.L1348F	ENST00000278616	NM_000051.3	1348	ttG/ttT																																																																															
ATM	472	MSKCC	GRCh37	11	108180938	108180938	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	40	325	0	ENST00000278616.4:c.5814T>G	p.Tyr1938Ter	p.Y1938*	ENST00000278616	NM_000051.3	1938	taT/taG																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344547	118344547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	63	507	0	ENST00000534358.1:c.2673G>T	p.Glu891Asp	p.E891D	ENST00000534358	NM_005933.3	891	gaG/gaT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118370096	118370096	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	45	376	0	ENST00000534358.1:c.6040C>A	p.Leu2014Ile	p.L2014I	ENST00000534358	NM_005933.3	2014	Ctc/Atc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118392874	118392874	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	64	444	0	ENST00000534358.1:c.11906A>C	p.Lys3969Thr	p.K3969T	ENST00000534358	NM_005933.3	3969	aAg/aCg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	461447	461447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	43	311	0	ENST00000399788.2:c.1073T>C	p.Val358Ala	p.V358A	ENST00000399788	NM_001042603.1	358	gTa/gCa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18534733	18534733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	56	346	0	ENST00000266497.5:c.1791G>T	p.Met597Ile	p.M597I	ENST00000266497		597	atG/atT																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944947	31944947	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868835690		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	54	280	0	ENST00000340398.3:c.154C>T	p.Arg52Cys	p.R52C	ENST00000340398	NM_001013699.2	52	Cgt/Tgt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244748	46244748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	85	471	0	ENST00000334344.6:c.2842C>T	p.Leu948Phe	p.L948F	ENST00000334344	NM_152641.2	948	Ctt/Ttt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49418718	49418718	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760369709		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	78	394	0	ENST00000301067.7:c.15796C>T	p.Arg5266Cys	p.R5266C	ENST00000301067	NM_003482.3	5266	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427080	49427080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	57	573	0	ENST00000301067.7:c.11408G>A	p.Gly3803Asp	p.G3803D	ENST00000301067	NM_003482.3	3803	gGc/gAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133220025	133220025	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113809231		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	59	523	0	ENST00000320574.5:c.4412G>A	p.Arg1471His	p.R1471H	ENST00000320574	NM_006231.2	1471	cGc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133241025	133241025	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	53	454	0	ENST00000320574.5:c.2492T>C	p.Met831Thr	p.M831T	ENST00000320574	NM_006231.2	831	aTg/aCg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28931787	28931787	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	66	416	0	ENST00000282397.4:c.2152A>T	p.Ile718Phe	p.I718F	ENST00000282397	NM_002019.4	718	Att/Ttt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001990	29001990	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	54	351	0	ENST00000282397.4:c.1175T>G	p.Ile392Ser	p.I392S	ENST00000282397	NM_002019.4	392	aTc/aGc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906634	32906634	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	46	440	0	ENST00000380152.3:c.1019A>C	p.Glu340Ala	p.E340A	ENST00000380152		340	gAa/gCa																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133660	41133660	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	67	457	0	ENST00000379561.5:c.1968A>G	p.Ter656TrpextTer15	p.*656Wext*15	ENST00000379561	NM_002015.3	656	tgA/tgG																																																																															
RB1	5925	MSKCC	GRCh37	13	48941678	48941678	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	42	240	0	ENST00000267163.4:c.988G>T	p.Asp330Tyr	p.D330Y	ENST00000267163	NM_000321.2	330	Gat/Tat																																																																															
RB1	5925	MSKCC	GRCh37	13	48955517	48955517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	43	367	0	ENST00000267163.4:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000267163	NM_000321.2	545	Gaa/Aaa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562165	95562165	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	65	410	0	ENST00000343455.3:c.5092A>C	p.Thr1698Pro	p.T1698P	ENST00000343455	NM_177438.2	1698	Act/Cct																																																																															
DICER1	23405	MSKCC	GRCh37	14	95577791	95577791	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	73	296	0	ENST00000343455.3:c.2119G>A	p.Glu707Lys	p.E707K	ENST00000343455	NM_177438.2	707	Gaa/Aaa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95597863	95597863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	46	321	1	ENST00000343455.3:c.421G>A	p.Glu141Lys	p.E141K	ENST00000343455	NM_177438.2	141	Gag/Aag																																																																															
MGA	23269	MSKCC	GRCh37	15	41988430	41988430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	64	428	0	ENST00000219905.7:c.1222G>A	p.Asp408Asn	p.D408N	ENST00000219905	NM_001164273.1	408	Gat/Aat																																																																															
MGA	23269	MSKCC	GRCh37	15	42058211	42058211	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	37	343	0	ENST00000219905.7:c.7931A>C	p.Asp2644Ala	p.D2644A	ENST00000219905	NM_001164273.1	2644	gAc/gCc																																																																															
USP8	9101	MSKCC	GRCh37	15	50769120	50769120	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	84	386	0	ENST00000307179.4:c.924T>G	p.Tyr308Ter	p.Y308*	ENST00000307179		308	taT/taG																																																																															
USP8	9101	MSKCC	GRCh37	15	50776551	50776551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	56	365	0	ENST00000307179.4:c.1883G>T	p.Arg628Ile	p.R628I	ENST00000307179		628	aGa/aTa																																																																															
BLM	641	MSKCC	GRCh37	15	91341486	91341486	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	55	292	0	ENST00000355112.3:c.3277T>G	p.Ser1093Ala	p.S1093A	ENST00000355112	NM_000057.2	1093	Tca/Gca																																																																															
BLM	641	MSKCC	GRCh37	15	91347521	91347521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	51	349	0	ENST00000355112.3:c.3683C>T	p.Ser1228Phe	p.S1228F	ENST00000355112	NM_000057.2	1228	tCt/tTt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658776	3658776	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	83	416	0	ENST00000294008.3:c.190A>C	p.Lys64Gln	p.K64Q	ENST00000294008	NM_032444.2	64	Aaa/Caa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943804	9943804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	60	419	0	ENST00000330684.3:c.1137G>T	p.Glu379Asp	p.E379D	ENST00000330684	NM_001134407.1	379	gaG/gaT																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647224	23647224	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	58	433	0	ENST00000261584.4:c.643G>T	p.Glu215Ter	p.E215*	ENST00000261584	NM_024675.3	215	Gaa/Taa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647280	23647280	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730881904		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	57	381	0	ENST00000261584.4:c.587G>A	p.Arg196Lys	p.R196K	ENST00000261584	NM_024675.3	196	aGa/aAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828966	72828966	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	84	527	0	ENST00000268489.5:c.7615T>G	p.Phe2539Val	p.F2539V	ENST00000268489	NM_006885.3	2539	Ttt/Gtt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830823	72830823	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	77	503	0	ENST00000268489.5:c.5758G>T	p.Glu1920Ter	p.E1920*	ENST00000268489	NM_006885.3	1920	Gag/Tag																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7990715	7990715	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	68	298	0	ENST00000319144.4:c.46T>C	p.Ser16Pro	p.S16P	ENST00000319144	NM_001139.2	16	Tcg/Ccg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013717	12013717	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	44	286	0	ENST00000353533.5:c.659A>C	p.Lys220Thr	p.K220T	ENST00000353533	NM_003010.3	220	aAa/aCa																																																																															
NF1	4763	MSKCC	GRCh37	17	29550523	29550523	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	60	291	0	ENST00000358273.4:c.1783G>T	p.Glu595Ter	p.E595*	ENST00000358273	NM_001042492.2	595	Gaa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29550524	29550524	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	41	302	0	ENST00000358273.4:c.1784A>C	p.Glu595Ala	p.E595A	ENST00000358273	NM_001042492.2	595	gAa/gCa																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33445578	33445578	+	intron_variant	Intron	SNP	C	C	T	rs763439048		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	101	415	0	ENST00000335858.7:c.144+552G>A		p.*48*	ENST00000335858	NM_133629.2																																																																																	
SLFN11	91607	MSKCC	GRCh37	17	33690588	33690588	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	68	502	0	ENST00000308377.4:c.239C>A	p.Ser80Tyr	p.S80Y	ENST00000308377	NM_152270.3	80	tCt/tAt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245987	41245987	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80357122		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	53	407	0	ENST00000357654.3:c.1561G>A	p.Ala521Thr	p.A521T	ENST00000357654	NM_007294.3	521	Gca/Aca																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246598	41246598	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	62	436	0	ENST00000357654.3:c.950A>C	p.Gln317Pro	p.Q317P	ENST00000357654	NM_007294.3	317	cAa/cCa																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56772402	56772402	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	71	447	0	ENST00000337432.4:c.256A>G	p.Thr86Ala	p.T86A	ENST00000337432	NM_058216.2	86	Aca/Gca																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78765262	78765262	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	48	293	0	ENST00000306801.3:c.843G>T	p.Gln281His	p.Q281H	ENST00000306801	NM_020761.2	281	caG/caT																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45422998	45422998	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	105	420	0	ENST00000262160.6:c.130G>T	p.Ala44Ser	p.A44S	ENST00000262160	NM_005901.5	44	Gca/Tca																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61323003	61323003	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	99	483	0	ENST00000283752.5:c.1061C>A	p.Ser354Ter	p.S354*	ENST00000283752	NM_006919.2	354	tCa/tAa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5206816	5206816	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	63	426	0	ENST00000357368.4:c.5816A>G	p.Tyr1939Cys	p.Y1939C	ENST00000357368	NM_002850.3	1939	tAc/tGc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245856	5245856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	77	487	0	ENST00000357368.4:c.919G>A	p.Ala307Thr	p.A307T	ENST00000357368	NM_002850.3	307	Gcc/Acc																																																																															
INSR	3643	MSKCC	GRCh37	19	7168033	7168033	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	94	400	0	ENST00000302850.5:c.1556A>G	p.Tyr519Cys	p.Y519C	ENST00000302850	NM_000208.2	519	tAc/tGc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311670	15311670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	24	611	0	ENST00000263388.2:c.47C>T	p.Ser16Leu	p.S16L	ENST00000263388	NM_000435.2	16	tCg/tTg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18958569	18958569	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753936939		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	48	304	0	ENST00000262803.5:c.388G>A	p.Asp130Asn	p.D130N	ENST00000262803	NM_002911.3	130	Gat/Aat																																																																															
AKT2	208	MSKCC	GRCh37	19	40742240	40742240	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	66	475	0	ENST00000392038.2:c.884G>A	p.Gly295Asp	p.G295D	ENST00000392038	NM_001626.4	295	gGc/gAc																																																																															
AXL	558	MSKCC	GRCh37	19	41745620	41745620	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	64	353	0	ENST00000301178.4:c.1307A>C	p.Gln436Pro	p.Q436P	ENST00000301178	NM_021913.4	436	cAg/cCg																																																																															
AXL	558	MSKCC	GRCh37	19	41763472	41763472	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	75	438	0	ENST00000301178.4:c.2271G>T	p.Glu757Asp	p.E757D	ENST00000301178	NM_021913.4	757	gaG/gaT																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52723008	52723008	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs910814626		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	70	502	0	ENST00000322088.6:c.1193G>A	p.Arg398Gln	p.R398Q	ENST00000322088	NM_014225.5	398	cGg/cAg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39262580	39262580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	46	379	0	ENST00000402219.2:c.926A>G	p.Asp309Gly	p.D309G	ENST00000402219	NM_005633.3	309	gAt/gGt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033720	48033720	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749522534		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	54	395	0	ENST00000234420.5:c.3931G>A	p.Glu1311Lys	p.E1311K	ENST00000234420	NM_000179.2	1311	Gaa/Aaa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61709574	61709574	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	67	325	0	ENST00000401558.2:c.2913A>C	p.Gln971His	p.Q971H	ENST00000401558	NM_003400.3	971	caA/caC																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719556	61719556	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	65	406	0	ENST00000401558.2:c.1627A>G	p.Asn543Asp	p.N543D	ENST00000401558	NM_003400.3	543	Aat/Gat																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99137161	99137161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	47	270	0	ENST00000074304.5:c.118G>T	p.Asp40Tyr	p.D40Y	ENST00000074304	NM_001134224.1	40	Gac/Tac																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99203969	99203969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	68	404	0	ENST00000074304.5:c.2832G>T	p.Lys944Asn	p.K944N	ENST00000074304	NM_001134224.1	944	aaG/aaT																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881473	111881473	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	86	442	0	ENST00000393256.3:c.151G>T	p.Glu51Ter	p.E51*	ENST00000393256	NM_006538.4	51	Gaa/Taa																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128047336	128047336	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	86	468	0	ENST00000285398.2:c.586G>T	p.Glu196Ter	p.E196*	ENST00000285398	NM_000122.1	196	Gaa/Taa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198273261	198273261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	64	369	0	ENST00000335508.6:c.949G>A	p.Asp317Asn	p.D317N	ENST00000335508	NM_012433.2	317	Gat/Aat																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295693	212295693	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	40	386	0	ENST00000342788.4:c.2620G>T	p.Glu874Ter	p.E874*	ENST00000342788	NM_005235.2	874	Gag/Tag																																																																															
CUL3	8452	MSKCC	GRCh37	2	225400280	225400280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	47	317	0	ENST00000264414.4:c.343G>A	p.Ala115Thr	p.A115T	ENST00000264414	NM_003590.4	115	Gct/Act																																																																															
TOP1	7150	MSKCC	GRCh37	20	39742631	39742631	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	82	353	0	ENST00000361337.2:c.1474G>T	p.Glu492Ter	p.E492*	ENST00000361337	NM_003286.2	492	Gaa/Taa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944442	40944442	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	74	447	0	ENST00000373198.4:c.2060A>G	p.Tyr687Cys	p.Y687C	ENST00000373198	NM_133170.3	687	tAc/tGc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385275	41385275	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	55	421	0	ENST00000373198.4:c.686A>G	p.Gln229Arg	p.Q229R	ENST00000373198	NM_133170.3	229	cAa/cGa																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62325782	62325782	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	A	A	G			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	88	373	0	ENST00000482936.1:c.3050A>G	p.Asp1017Gly	p.D1017G	ENST00000482936		1017	gAc/gGc																																																																															
EP300	2033	MSKCC	GRCh37	22	41553290	41553290	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	83	382	0	ENST00000263253.7:c.3379A>C	p.Asn1127His	p.N1127H	ENST00000263253	NM_001429.3	1127	Aat/Cat																																																																															
EP300	2033	MSKCC	GRCh37	22	41573584	41573584	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1301322622		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	77	549	2	ENST00000263253.7:c.5869C>T	p.Pro1957Ser	p.P1957S	ENST00000263253	NM_001429.3	1957	Ccc/Tcc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266945	41266945	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	72	495	0	ENST00000349496.5:c.616A>C	p.Asn206His	p.N206H	ENST00000349496	NM_001904.3	206	Aat/Cat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47139492	47139492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	67	398	0	ENST00000409792.3:c.5095G>A	p.Ala1699Thr	p.A1699T	ENST00000409792	NM_014159.6	1699	Gca/Aca																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52584593	52584593	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	71	446	0	ENST00000394830.3:c.4420G>T	p.Ala1474Ser	p.A1474S	ENST00000394830	NM_018313.4	1474	Gct/Tct																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981194	63981194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	61	392	0	ENST00000295900.6:c.1696G>T	p.Val566Leu	p.V566L	ENST00000295900	NM_000333.3	566	Gtg/Ttg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138453578	138453578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	58	353	0	ENST00000289153.2:c.870G>T	p.Lys290Asn	p.K290N	ENST00000289153	NM_006219.2	290	aaG/aaT																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182665049	182665049	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	55	319	0	ENST00000292782.4:c.677A>G	p.Asp226Gly	p.D226G	ENST00000292782	NM_020640.2	226	gAc/gGc																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182679086	182679086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	50	293	0	ENST00000292782.4:c.448G>A	p.Glu150Lys	p.E150K	ENST00000292782	NM_020640.2	150	Gaa/Aaa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902392	1902392	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753120179		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	58	403	0	ENST00000382895.3:c.11G>A	p.Ser4Asn	p.S4N	ENST00000382895	NM_133330.2	4	aGc/aAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55124951	55124951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	54	324	0	ENST00000257290.5:c.16C>T	p.Pro6Ser	p.P6S	ENST00000257290	NM_006206.4	6	Ccg/Tcg																																																																															
KDR	3791	MSKCC	GRCh37	4	55946305	55946305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	68	466	0	ENST00000263923.4:c.3874G>A	p.Glu1292Lys	p.E1292K	ENST00000263923	NM_002253.2	1292	Gag/Aag																																																																															
ALB	213	MSKCC	GRCh37	4	74281983	74281983	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	43	364	0	ENST00000295897.4:c.1202T>G	p.Phe401Cys	p.F401C	ENST00000295897	NM_000477.5	401	tTt/tGt																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383974	84383974	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	65	363	0	ENST00000321945.7:c.878T>G	p.Phe293Cys	p.F293C	ENST00000321945	NM_139076.2	293	tTt/tGt																																																																															
TET2	54790	MSKCC	GRCh37	4	106156706	106156706	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	75	438	0	ENST00000380013.4:c.1607A>C	p.Lys536Thr	p.K536T	ENST00000380013	NM_001127208.2	536	aAa/aCa																																																																															
GAB1	2549	MSKCC	GRCh37	4	144336784	144336784	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	46	375	0	ENST00000262994.4:c.227A>C	p.Lys76Thr	p.K76T	ENST00000262994	NM_002039.3	76	aAa/aCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187530984	187530984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	22	395	0	ENST00000441802.2:c.10039G>T	p.Asp3347Tyr	p.D3347Y	ENST00000441802	NM_005245.3	3347	Gat/Tat																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950754	38950754	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	49	432	0	ENST00000357387.3:c.3196G>T	p.Glu1066Ter	p.E1066*	ENST00000357387	NM_152756.3	1066	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112173285	112173285	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	60	331	0	ENST00000257430.4:c.1994T>G	p.Leu665Ter	p.L665*	ENST00000257430	NM_000038.5	665	tTa/tGa																																																																															
APC	324	MSKCC	GRCh37	5	112174590	112174590	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	53	470	0	ENST00000257430.4:c.3299C>A	p.Ser1100Tyr	p.S1100Y	ENST00000257430	NM_000038.5	1100	tCt/tAt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131911529	131911529	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	36	352	0	ENST00000265335.6:c.274G>T	p.Glu92Ter	p.E92*	ENST00000265335		92	Gaa/Taa																																																																															
NPM1	4869	MSKCC	GRCh37	5	170832312	170832312	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1458436735		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	28	156	0	ENST00000296930.5:c.676G>A	p.Glu226Lys	p.E226K	ENST00000296930	NM_002520.6	226	Gaa/Aaa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562489	176562489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	78	499	0	ENST00000439151.2:c.385G>A	p.Glu129Lys	p.E129K	ENST00000439151	NM_022455.4	129	Gaa/Aaa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637137	176637137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	59	468	0	ENST00000439151.2:c.1737G>T	p.Lys579Asn	p.K579N	ENST00000439151	NM_022455.4	579	aaG/aaT																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839941	27839941	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	143	591	0	ENST00000328488.2:c.153G>C	p.Glu51Asp	p.E51D	ENST00000328488	NM_003533.2	51	gaG/gaC																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670915	30670915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	65	482	0	ENST00000376406.3:c.5831G>A	p.Gly1944Glu	p.G1944E	ENST00000376406	NM_014641.2	1944	gGa/gAa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187498	32187498	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	70	543	0	ENST00000375023.3:c.1381T>G	p.Cys461Gly	p.C461G	ENST00000375023	NM_004557.3	461	Tgc/Ggc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192498	138192498	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1422470027		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	84	425	0	ENST00000237289.4:c.134G>A	p.Arg45Gln	p.R45Q	ENST00000237289	NM_001270507.1	45	cGa/cAa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196933	138196933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	59	434	0	ENST00000237289.4:c.595C>A	p.Leu199Ile	p.L199I	ENST00000237289	NM_001270507.1	199	Ctt/Att																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138197171	138197171	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751503246		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	77	460	0	ENST00000237289.4:c.673G>A	p.Ala225Thr	p.A225T	ENST00000237289	NM_001270507.1	225	Gcc/Acc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157510859	157510859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	57	495	0	ENST00000346085.5:c.3634C>T	p.Pro1212Ser	p.P1212S	ENST00000346085	NM_020732.3	1212	Cca/Tca																																																																															
CARD11	84433	MSKCC	GRCh37	7	2974257	2974257	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868593694		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	49	406	1	ENST00000396946.4:c.1348C>T	p.Pro450Ser	p.P450S	ENST00000396946	NM_032415.4	450	Ccc/Tcc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148512616	148512616	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	41	378	0	ENST00000320356.2:c.1528A>G	p.Lys510Glu	p.K510E	ENST00000320356	NM_004456.4	510	Aag/Gag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151864389	151864389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	54	354	0	ENST00000262189.6:c.9592C>T	p.Leu3198Phe	p.L3198F	ENST00000262189	NM_170606.2	3198	Ctt/Ttt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38156991	38156991	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766760275		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	71	404	0	ENST00000317025.8:c.2729C>T	p.Ser910Leu	p.S910L	ENST00000317025	NM_023034.1	910	tCg/tTg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38157028	38157028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	35	423	0	ENST00000317025.8:c.2692C>T	p.Arg898Cys	p.R898C	ENST00000317025	NM_023034.1	898	Cgt/Tgt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38318615	38318615	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	62	342	0	ENST00000425967.3:c.10A>T	p.Arg4Trp	p.R4W	ENST00000425967	NM_001174067.1	4	Agg/Tgg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965375	68965375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	47	360	0	ENST00000288368.4:c.987G>T	p.Lys329Asn	p.K329N	ENST00000288368	NM_024870.2	329	aaG/aaT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046416	69046416	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	71	426	0	ENST00000288368.4:c.3889G>T	p.Glu1297Ter	p.E1297*	ENST00000288368	NM_024870.2	1297	Gag/Tag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69136801	69136801	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	49	325	0	ENST00000288368.4:c.4715G>T	p.Arg1572Ile	p.R1572I	ENST00000288368	NM_024870.2	1572	aGa/aTa																																																																															
MTAP	4507	MSKCC	GRCh37	9	21802752	21802752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	82	292	0	ENST00000380172.4:c.5C>T	p.Ala2Val	p.A2V	ENST00000380172	NM_002451.3	2	gCc/gTc																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80409446	80409446	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	27	207	0	ENST00000286548.4:c.668T>C	p.Val223Ala	p.V223A	ENST00000286548	NM_002072.3	223	gTc/gCc																																																																															
FANCC	2176	MSKCC	GRCh37	9	97912214	97912214	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1166491683		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	59	358	0	ENST00000289081.3:c.677C>T	p.Ala226Val	p.A226V	ENST00000289081	NM_000136.2	226	gCc/gTc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98242839	98242839	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765174527		P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	30	388	0	ENST00000331920.6:c.778G>A	p.Asp260Asn	p.D260N	ENST00000331920	NM_000264.3	260	Gac/Aac																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891169	101891169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	47	376	0	ENST00000374994.4:c.130G>T	p.Asp44Tyr	p.D44Y	ENST00000374994	NM_004612.2	44	Gac/Tac																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139565450	139565450	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	40	285	0	ENST00000308874.7:c.620T>C	p.Val207Ala	p.V207A	ENST00000308874		207	gTg/gCg																																																																															
ARAF	369	MSKCC	GRCh37	X	47430812	47430812	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	75	245	0	ENST00000377045.4:c.1777G>T	p.Glu593Ter	p.E593*	ENST00000377045	NM_001654.4	593	Gag/Tag																																																																															
ATRX	546	MSKCC	GRCh37	X	76938430	76938430	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	51	188	0	ENST00000373344.5:c.2318A>C	p.Lys773Thr	p.K773T	ENST00000373344	NM_000489.3	773	aAa/aCa																																																																															
XIAP	331	MSKCC	GRCh37	X	123034395	123034395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	58	156	0	ENST00000355640.3:c.1152C>A	p.Phe384Leu	p.F384L	ENST00000355640		384	ttC/ttA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0069406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	47	305	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	59	519	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0069406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	23	216	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175378	112175378	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0069406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	197	484	0	ENST00000257430.4:c.4087A>T	p.Lys1363Ter	p.K1363*	ENST00000257430	NM_000038.5	1363	Aaa/Taa																																																																															
MET	4233	MSKCC	GRCh37	7	116399465	116399465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	113	459	0	ENST00000397752.3:c.2285G>A	p.Gly762Asp	p.G762D	ENST00000397752	NM_000245.2	762	gGt/gAt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206653815	206653815	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782278442		P-0069412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	100	533	0	ENST00000367120.3:c.1366C>T	p.Arg456Trp	p.R456W	ENST00000367120	NM_014002.3	456	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0069412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	264	531	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272113	15272113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1243104564		P-0069412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	103	627	0	ENST00000263388.2:c.6326G>A	p.Arg2109Gln	p.R2109Q	ENST00000263388	NM_000435.2	2109	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0069412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	47	274	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175366	112175366	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs863225352		P-0069412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	296	494	0	ENST00000257430.4:c.4075A>T	p.Lys1359Ter	p.K1359*	ENST00000257430	NM_000038.5	1359	Aaa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153253862	153253863	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0069412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	143	281	0	ENST00000281708.4:c.870_871del	p.Tyr291CysfsTer25	p.Y291Cfs*25	ENST00000281708	NM_033632.3	290	ctCTat/ctat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0069450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	99	199	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0069450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	164	315	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280804	41280804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	189	327	0	ENST00000349496.5:c.2317C>T	p.Gln773Ter	p.Q773*	ENST00000349496	NM_001904.3	773	Cag/Tag																																																																															
TET2	54790	MSKCC	GRCh37	4	106193892	106193892	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1049545383		P-0069450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	191	269	2	ENST00000380013.4:c.4354C>T	p.Arg1452Ter	p.R1452*	ENST00000380013	NM_001127208.2	1452	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604668	48604668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	171	330	0	ENST00000342988.3:c.1490G>A	p.Arg497His	p.R497H	ENST00000342988	NM_005359.5	497	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0069450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	127	216	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28919596	28919596	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1244106213		P-0069450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	168	272	0	ENST00000282397.4:c.2341C>T	p.Arg781Ter	p.R781*	ENST00000282397	NM_002019.4	781	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398220	25398220	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	133	216	0	ENST00000256078.4:c.99T>A	p.Asp33Glu	p.D33E	ENST00000256078	NM_033360.2	33	gaT/gaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0069461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	111	371	5	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0069461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	66	395	4	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81927367	81927367	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781016626		P-0069461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	38	290	0	ENST00000359376.3:c.1040G>A	p.Arg347His	p.R347H	ENST00000359376	NM_002661.3	347	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604707	48604707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	48	432	3	ENST00000342988.3:c.1529G>A	p.Gly510Glu	p.G510E	ENST00000342988	NM_005359.5	510	gGa/gAa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467750	50467750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	62	412	5	ENST00000331340.3:c.985C>T	p.Pro329Ser	p.P329S	ENST00000331340	NM_006060.4	329	Ccg/Tcg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238957	5238957	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760549393		P-0069461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	24	354	7	ENST00000357368.4:c.1822G>A	p.Val608Met	p.V608M	ENST00000357368	NM_002850.3	608	Gtg/Atg																																																																															
RET	5979	MSKCC	GRCh37	10	43600594	43600594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	13	417	0	ENST00000355710.3:c.820G>A	p.Ala274Thr	p.A274T	ENST00000355710	NM_020975.4	274	Gcg/Acg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330643	65330651	+	inframe_deletion	In_Frame_Del	DEL	CAACAGAAA	CAACAGAAA	-			P-0069461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	17	377	0	ENST00000342505.4:c.995_1003del	p.Val332_Val334del	p.V332_V334del	ENST00000342505	NM_002227.2	332	gTTTCTGTTGaa/gaa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118862	70118862	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0069461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	108	433	7	ENST00000245479.2:c.435del	p.Leu146Ter	p.L146*	ENST00000245479	NM_000346.3	145	cTt/ct																																																																															
REST	5978	MSKCC	GRCh37	4	57797199	57797200	+	missense_variant	Missense_Mutation	DNP	GA	GA	TC			P-0069461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	26	509	0	ENST00000309042.7:c.2175_2176inv	p.Gln725_Lys726delinsHisGln	p.Q725_K726delinsHQ	ENST00000309042	NM_005612.4	725	caGAag/caTCag																																																																															
AR	367	MSKCC	GRCh37	X	66766096	66766096	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1326711596		P-0069461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	12	460	0	ENST00000374690.3:c.1108G>T	p.Ala370Ser	p.A370S	ENST00000374690	NM_000044.3	370	Gct/Tct																																																																															
APC	324	MSKCC	GRCh37	5	112175128	112175128	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0069461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	49	399	1	ENST00000257430.4:c.3839del	p.Leu1280CysfsTer8	p.L1280Cfs*8	ENST00000257430	NM_000038.5	1279	tcT/tc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057916	27057916	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1268688430		P-0069461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	17	434	0	ENST00000324856.7:c.1624C>G	p.Gln542Glu	p.Q542E	ENST00000324856	NM_006015.4	542	Cag/Gag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2110689	2110689	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	15	315	0	ENST00000219476.3:c.994G>C	p.Glu332Gln	p.E332Q	ENST00000219476	NM_000548.3	332	Gag/Cag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932930	39932961	+	frameshift_variant	Frame_Shift_Del	DEL	CGTTAGTGATGACAGCATCGGTGCCGCCCATG	CGTTAGTGATGACAGCATCGGTGCCGCCCATG	-			P-0069461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	18	489	0	ENST00000378444.4:c.1638_1669del	p.Met547PhefsTer53	p.M547Ffs*53	ENST00000378444	NM_001123385.1	546	cgCATGGGCGGCACCGATGCTGTCATCACTAACGtt/cgtt																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818800	32818800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	98	400	2	ENST00000354258.4:c.1151C>T	p.Ser384Leu	p.S384L	ENST00000354258	NM_000593.5	384	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0069516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	230	371	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0069516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	45	118	1	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519499	176519499	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	230	424	0	ENST00000292408.4:c.905T>A	p.Val302Glu	p.V302E	ENST00000292408	NM_213647.1	302	gTg/gAg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26101063	26101063	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775926681		P-0069516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	172	267	0	ENST00000435504.4:c.29G>A	p.Gly10Asp	p.G10D	ENST00000435504		10	gGc/gAc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279857	29279857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	49	112	0	ENST00000544604.2:c.103C>T	p.Pro35Ser	p.P35S	ENST00000544604	NM_001206998.1	35	Ccg/Tcg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106522644	106522644	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	110	191	0	ENST00000359195.3:c.2621A>G	p.Asp874Gly	p.D874G	ENST00000359195	NM_002649.2	874	gAc/gGc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63973852	63973852	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	97	358	0	ENST00000295900.6:c.1213C>A	p.Gln405Lys	p.Q405K	ENST00000295900	NM_000333.3	405	Cag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175769	112175771	+	frameshift_variant	Frame_Shift_Del	DEL	CGG	CGG	A			P-0069516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	94	346	0	ENST00000257430.4:c.4478_4480delinsA	p.Thr1493LysfsTer20	p.T1493Kfs*20	ENST00000257430	NM_000038.5	1493	aCGGaa/aAaa																																																																															
APC	324	MSKCC	GRCh37	5	112173560	112173561	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	123	270	0	ENST00000257430.4:c.2274dup	p.Ala759SerfsTer16	p.A759Sfs*16	ENST00000257430	NM_000038.5	757	caa/cAaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0069572-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			157	113	192	2	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0069572-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			65	283	302	4	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0069572-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	176	505	7	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0069572-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			81	219	364	5	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0069572-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			229	202	385	3	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843551	3843551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763070109		P-0069572-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			376	276	274	3	ENST00000262367.5:c.1052G>A	p.Arg351His	p.R351H	ENST00000262367	NM_004380.2	351	cGc/cAc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741756	17741756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069572-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			198	177	288	3	ENST00000250003.3:c.427C>T	p.Arg143Trp	p.R143W	ENST00000250003	NM_002478.4	143	Cgg/Tgg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069572-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			65	264	424	5	ENST00000349496.5:c.1982G>C	p.Arg661Pro	p.R661P	ENST00000349496	NM_001904.3	661	cGa/cCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0069572-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			204	335	285	3	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	227	488	0	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767342		P-0069588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	35	341	0	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247328	153247328	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	275	341	0	ENST00000281708.4:c.1474C>T	p.Gln492Ter	p.Q492*	ENST00000281708	NM_033632.3	492	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175707	112175707	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	299	425	0	ENST00000257430.4:c.4418del	p.Asn1473MetfsTer34	p.N1473Mfs*34	ENST00000257430	NM_000038.5	1472	gtA/gt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593520	48593520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	95	254	0	ENST00000342988.3:c.1271A>T	p.Asp424Val	p.D424V	ENST00000342988	NM_005359.5	424	gAt/gTt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143067107	143067107	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	102	268	0	ENST00000262992.4:c.1606A>T	p.Ile536Phe	p.I536F	ENST00000262992	NM_001101669.1	536	Att/Ttt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130309	11130309	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	108	374	0	ENST00000344626.4:c.2548A>G	p.Ser850Gly	p.S850G	ENST00000344626	NM_003072.3	850	Agt/Ggt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118901	70118901	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	201	477	0	ENST00000245479.2:c.473C>A	p.Ala158Glu	p.A158E	ENST00000245479	NM_000346.3	158	gCg/gAg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78935264	78935264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	192	404	0	ENST00000306801.3:c.3676C>T	p.His1226Tyr	p.H1226Y	ENST00000306801	NM_020761.2	1226	Cac/Tac																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67358631	67358631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	35	408	0	ENST00000327367.4:c.139C>T	p.Gln47Ter	p.Q47*	ENST00000327367	NM_005902.3	47	Cag/Tag																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739699	41739699	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	79	375	0	ENST00000242208.4:c.274G>C	p.Val92Leu	p.V92L	ENST00000242208	NM_002192.2	92	Gtg/Ctg																																																																															
APC	324	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	135	295	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112173578	112173578	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	196	315	0	ENST00000257430.4:c.2287G>T	p.Glu763Ter	p.E763*	ENST00000257430	NM_000038.5	763	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs760043106		P-0069610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	298	383	0	ENST00000269305.4:c.584T>G	p.Ile195Ser	p.I195S	ENST00000269305	NM_001126112.2	195	aTc/aGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0069610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	105	207	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132718	152132718	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1202370478		P-0069610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	65	89	1	ENST00000262189.6:c.154A>G	p.Arg52Gly	p.R52G	ENST00000262189	NM_170606.2	52	Aga/Gga																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143003267	143003333	+	frameshift_variant	Frame_Shift_Del	DEL	CACTGACATCGATGTCCTGTCTTTGGCACTTTTACAACAGGTGAAACGAATACCATTCAGTTTGCGG	CACTGACATCGATGTCCTGTCTTTGGCACTTTTACAACAGGTGAAACGAATACCATTCAGTTTGCGG	-			P-0069610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	71	213	0	ENST00000262992.4:c.2493_2559del	p.Cys831Ter	p.C831*	ENST00000262992	NM_001101669.1	831	tgCCGCAAACTGAATGGTATTCGTTTCACCTGTTGTAAAAGTGCCAAAGACAGGACATCGATGTCAGTG/tg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81925183	81925183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	143	358	0	ENST00000359376.3:c.974C>T	p.Ser325Leu	p.S325L	ENST00000359376	NM_002661.3	325	tCg/tTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743865	40743865	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758531464		P-0069622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	135	298	0	ENST00000373198.4:c.3130G>A	p.Val1044Ile	p.V1044I	ENST00000373198	NM_133170.3	1044	Gtc/Atc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0069622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	9	188	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191158	185191158	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1267105230		P-0069622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	142	403	0	ENST00000265026.3:c.2039G>A	p.Arg680Gln	p.R680Q	ENST00000265026	NM_004721.4	680	cGg/cAg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1920217	1920217	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200784805		P-0069622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	149	401	1	ENST00000382895.3:c.1277C>T	p.Thr426Met	p.T426M	ENST00000382895	NM_133330.2	426	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175136	112175136	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	312	405	0	ENST00000257430.4:c.3845C>A	p.Ser1282Ter	p.S1282*	ENST00000257430	NM_000038.5	1282	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7590693	7590693	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0069622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	138	341	0	ENST00000269305.4:c.-29+2T>C		p.X10_splice	ENST00000269305	NM_001126112.2	10																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5229687	5229687	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1374310303		P-0069622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	96	241	0	ENST00000357368.4:c.2164G>A	p.Ala722Thr	p.A722T	ENST00000357368	NM_002850.3	722	Gcg/Acg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945996	17945997	+	inframe_insertion	In_Frame_Ins	INS	-	-	CATTGC			P-0069622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	210	458	0	ENST00000458235.1:c.1937_1942dup	p.Gly646_Asn647dup	p.G646_N647dup	ENST00000458235	NM_000215.3	646	gtc/gGCAATGtc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40709562	40709562	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			751	122	320	0	ENST00000373198.4:c.4340A>T	p.Lys1447Ile	p.K1447I	ENST00000373198	NM_133170.3	1447	aAa/aTa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117866643	117866643	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	91	325	0	ENST00000297338.2:c.1002C>A	p.Ser334Arg	p.S334R	ENST00000297338	NM_006265.2	334	agC/agA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0069648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	61	224	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0069648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	68	316	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29652879	29652879	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	70	241	0	ENST00000358273.4:c.4877A>T	p.His1626Leu	p.H1626L	ENST00000358273	NM_001042492.2	1626	cAt/cTt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900983	114900984	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0069648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	61	298	0	ENST00000543371.1:c.598dup	p.Leu200ProfsTer10	p.L200Pfs*10	ENST00000543371	NM_001198531.1	198	cac/caCc																																																																															
CALR	811	MSKCC	GRCh37	19	13049545	13049545	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	86	260	0	ENST00000316448.5:c.52G>T	p.Glu18Ter	p.E18*	ENST00000316448	NM_004343.3	18	Gag/Tag																																																																															
CUL3	8452	MSKCC	GRCh37	2	225378278	225378278	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	69	244	0	ENST00000264414.4:c.617A>G	p.Glu206Gly	p.E206G	ENST00000264414	NM_003590.4	206	gAg/gGg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0069656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	79	261	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0069656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	87	308	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																															
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	61	296	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																															
RET	5979	MSKCC	GRCh37	10	43613892	43613892	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1400642102		P-0069656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	60	236	0	ENST00000355710.3:c.2356C>T	p.His786Tyr	p.H786Y	ENST00000355710	NM_020975.4	786	Cat/Tat																																																																															
RB1	5925	MSKCC	GRCh37	13	48942662	48942662	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0069656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	34	207	0	ENST00000267163.4:c.1050-1G>C		p.X350_splice	ENST00000267163	NM_000321.2	350																																																																																
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0069665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	80	274	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174670	112174670	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	46	373	0	ENST00000257430.4:c.3379C>T	p.Gln1127Ter	p.Q1127*	ENST00000257430	NM_000038.5	1127	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175302	112175303	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	AT			P-0069665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	61	358	1	ENST00000257430.4:c.4011_4012delinsAT	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1337	ctGCag/ctATag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0069723-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			70	30	169	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180052980	180052980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069723-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	228	500	0	ENST00000261937.6:c.1310G>A	p.Arg437His	p.R437H	ENST00000261937	NM_182925.4	437	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112155026	112155026	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs863225309		P-0069723-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	83	333	0	ENST00000257430.4:c.1297C>T	p.Gln433Ter	p.Q433*	ENST00000257430	NM_000038.5	433	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0069723-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	56	269	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577152	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGTAGATTA	CCAGTAGATTA	-			P-0069723-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	156	336	0	ENST00000269305.4:c.786_796del	p.Asn263ThrfsTer5	p.N263Tfs*5	ENST00000269305	NM_001126112.2	262	ggTAATCTACTGGga/ggga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913237		P-0069747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	113	350	0	ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67655479	67655479	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs769948988		P-0069747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	225	354	0	ENST00000264010.4:c.1342C>T	p.Arg448Ter	p.R448*	ENST00000264010	NM_006565.3	448	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519998		P-0069747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	341	564	0	ENST00000269305.4:c.581T>C	p.Leu194Pro	p.L194P	ENST00000269305	NM_001126112.2	194	cTt/cCt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0069747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	281	430	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244091	153244091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	303	528	2	ENST00000281708.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000281708	NM_033632.3	689	cGg/cAg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0069747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	267	346	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446130	49446130	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	301	684	0	ENST00000301067.7:c.1336G>T	p.Glu446Ter	p.E446*	ENST00000301067	NM_003482.3	446	Gag/Tag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71008478	71008478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	298	472	0	ENST00000318789.4:c.1954G>T	p.Val652Leu	p.V652L	ENST00000318789	NM_032682.5	652	Gtg/Ttg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0069751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	115	414	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0069751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	150	466	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435996	56435996	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	36	716	0	ENST00000407977.2:c.1141C>G	p.Pro381Ala	p.P381A	ENST00000407977		381	Cca/Gca																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9776087	9776087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755725121		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	263	288	0	ENST00000377346.4:c.551G>A	p.Arg184Gln	p.R184Q	ENST00000377346	NM_005026.3	184	cGg/cAg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65309887	65309887	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1304838920		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	225	265	0	ENST00000342505.4:c.2263C>T	p.Arg755Ter	p.R755*	ENST00000342505	NM_002227.2	755	Cga/Tga																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117695979	117695979	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757275063		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	213	289	0	ENST00000369458.3:c.458C>T	p.Pro153Leu	p.P153L	ENST00000369458	NM_024626.3	153	cCg/cTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70412259	70412259	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	158	191	0	ENST00000373644.4:c.4369T>C	p.Tyr1457His	p.Y1457H	ENST00000373644	NM_030625.2	1457	Tat/Cat																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137241	64137241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	308	391	0	ENST00000334205.4:c.1673G>A	p.Arg558Gln	p.R558Q	ENST00000334205	NM_003942.2	558	cGg/cAg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942053	71942053	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	311	401	0	ENST00000298229.2:c.1322del	p.Asn441ThrfsTer2	p.N441Tfs*2	ENST00000298229	NM_001567.3	439	ccA/cc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245973	46245973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142127790		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	189	292	0	ENST00000334344.6:c.4067C>T	p.Pro1356Leu	p.P1356L	ENST00000334344	NM_152641.2	1356	cCg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426885	49426885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	313	407	0	ENST00000301067.7:c.11603G>T	p.Gly3868Val	p.G3868V	ENST00000301067	NM_003482.3	3868	gGg/gTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42028735	42028735	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	204	326	0	ENST00000219905.7:c.4276del	p.Met1426TrpfsTer15	p.M1426Wfs*15	ENST00000219905	NM_001164273.1	1425	Aaa/aa																																																																															
MGA	23269	MSKCC	GRCh37	15	42054541	42054541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1458609443		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	186	216	0	ENST00000219905.7:c.7731del	p.Asp2578ThrfsTer10	p.D2578Tfs*10	ENST00000219905	NM_001164273.1	2575	agA/ag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821631	72821631	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199920204		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	206	381	0	ENST00000268489.5:c.10544G>A	p.Gly3515Asp	p.G3515D	ENST00000268489	NM_006885.3	3515	gGc/gAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72994020	72994020	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200637584		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	40	310	0	ENST00000268489.5:c.25G>A	p.Val9Ile	p.V9I	ENST00000268489	NM_006885.3	9	Gtc/Atc																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108242	8108242	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369229594		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	289	293	0	ENST00000585124.1:c.982C>T	p.Arg328Trp	p.R328W	ENST00000585124	NM_004217.3	328	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	611	454	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220394	1220394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	186	369	0	ENST00000326873.7:c.487G>A	p.Gly163Ser	p.G163S	ENST00000326873	NM_000455.4	163	Ggc/Agc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976205	18976205	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			745	47	427	0	ENST00000262803.5:c.2965A>G	p.Met989Val	p.M989V	ENST00000262803	NM_002911.3	989	Atg/Gtg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	285	394	2	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214714	36214714	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	179	315	0	ENST00000222270.7:c.3145del	p.Ala1049ArgfsTer133	p.A1049Rfs*133	ENST00000222270	NM_014727.1	1047	cGg/cg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214899	36214899	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	267	319	0	ENST00000222270.7:c.3325C>T	p.Arg1109Ter	p.R1109*	ENST00000222270	NM_014727.1	1109	Cga/Tga																																																																															
AXL	558	MSKCC	GRCh37	19	41743932	41743933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778012871		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	244	378	0	ENST00000301178.4:c.874dup	p.His292ProfsTer47	p.H292Pfs*47	ENST00000301178	NM_021913.4	289	-/C																																																																															
BBC3	27113	MSKCC	GRCh37	19	47725019	47725019	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1039339737		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	262	346	0	ENST00000449228.1:c.725del	p.Gly242AlafsTer48	p.G242Afs*48	ENST00000449228	NM_001127240.2	242	gGc/gc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905061	50905061	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	233	295	1	ENST00000440232.2:c.347del	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	115	Ccc/cc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607487	46607487	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	264	386	0	ENST00000263734.3:c.1681del	p.Gln561SerfsTer7	p.Q561Sfs*7	ENST00000263734	NM_001430.4	559	aCc/ac																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	191	338	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017747	31017749	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-	rs745311249		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	161	239	1	ENST00000375687.4:c.619_621del	p.Ser207del	p.S207del	ENST00000375687	NM_015338.5	203	tcCAGc/tcc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	244	356	5	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275688	41275688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	111	312	0	ENST00000349496.5:c.1583G>A	p.Arg528His	p.R528H	ENST00000349496	NM_001904.3	528	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	106	129	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
KDR	3791	MSKCC	GRCh37	4	55976872	55976872	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs551579207		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	225	304	0	ENST00000263923.4:c.1040G>A	p.Arg347His	p.R347H	ENST00000263923	NM_002253.2	347	cGt/cAt																																																																															
TET2	54790	MSKCC	GRCh37	4	106193787	106193787	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749210253		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	253	285	0	ENST00000380013.4:c.4249G>A	p.Val1417Ile	p.V1417I	ENST00000380013	NM_001127208.2	1417	Gtt/Att																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249440	153249440	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	196	325	0	ENST00000281708.4:c.1338G>T	p.Trp446Cys	p.W446C	ENST00000281708	NM_033632.3	446	tgG/tgT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521066	187521066	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs572074365		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	296	334	0	ENST00000441802.2:c.12089C>T	p.Pro4030Leu	p.P4030L	ENST00000441802	NM_005245.3	4030	cCg/cTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1264673	1264673	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs559028617		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	282	349	0	ENST00000310581.5:c.2689G>A	p.Val897Met	p.V897M	ENST00000310581	NM_198253.2	897	Gtg/Atg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	193	237	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	386	302	1	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188977	32188977	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760997487		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			763	54	445	0	ENST00000375023.3:c.577C>T	p.Arg193Cys	p.R193C	ENST00000375023	NM_004557.3	193	Cgt/Tgt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	208	305	0	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	191	223	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345760	152345760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	225	269	0	ENST00000359321.1:c.810del	p.Phe270LeufsTer27	p.F270Lfs*27	ENST00000359321	NM_005431.1	270	ttT/tt																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345769	152345769	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1479955856		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	226	272	0	ENST00000359321.1:c.801del	p.Lys267AsnfsTer30	p.K267Nfs*30	ENST00000359321	NM_005431.1	267	aaA/aa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372093	55372093	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	217	436	0	ENST00000297316.4:c.788del	p.Pro263ArgfsTer124	p.P263Rfs*124	ENST00000297316	NM_022454.3	261	ggC/gg																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882049	36882050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs780753361		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	277	318	1	ENST00000358127.4:c.963dup	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	-/C																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882091	36882091	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	269	267	0	ENST00000358127.4:c.922G>T	p.Ala308Ser	p.A308S	ENST00000358127	NM_001280556.1	308	Gcg/Tcg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	238	336	3	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	52	203	4	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166488	118166488	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	300	359	0	ENST00000369448.3:c.998T>C	p.Ile333Thr	p.I333T	ENST00000369448	NM_017709.3	333	aTc/aCc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163317661	163317661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	159	247	0	ENST00000271452.3:c.1057G>A	p.Ala353Thr	p.A353T	ENST00000271452	NM_145697.2	353	Gcc/Acc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562310	21562310	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	217	389	0	ENST00000382592.4:c.1609T>C	p.Cys537Arg	p.C537R	ENST00000382592	NM_014572.2	537	Tgc/Cgc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434578	110434580	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-	rs777368004		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	204	406	1	ENST00000375856.3:c.3821_3823del	p.Pro1274del	p.P1274del	ENST00000375856	NM_003749.2	1274	cCGCtt/ctt																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675473	40675473	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1283361380		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	211	278	0	ENST00000249776.8:c.254C>T	p.Thr85Ile	p.T85I	ENST00000249776	NM_033286.3	85	aCa/aTa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724589	43724589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	286	350	0	ENST00000382044.4:c.3478C>A	p.Gln1160Lys	p.Q1160K	ENST00000382044	NM_001141980.1	1160	Caa/Aaa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836252	89836254	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs1310756192		P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	341	430	0	ENST00000389301.3:c.2495_2497del	p.Phe832del	p.F832del	ENST00000389301	NM_000135.2	832	tTCTgc/tgc																																																																															
NF1	4763	MSKCC	GRCh37	17	29592336	29592336	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	127	199	0	ENST00000358273.4:c.4819del	p.Tyr1607IlefsTer17	p.Y1607Ifs*17	ENST00000358273	NM_001042492.2	1605	aTt/at																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30325948	30325948	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	30	293	0	ENST00000322652.5:c.2146A>G	p.Asn716Asp	p.N716D	ENST00000322652	NM_015355.2	716	Aac/Gac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11100115	11100115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	268	308	0	ENST00000344626.4:c.1241G>A	p.Arg414Lys	p.R414K	ENST00000344626	NM_003072.3	414	aGg/aAg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905476	50905476	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	265	449	0	ENST00000440232.2:c.604C>A	p.His202Asn	p.H202N	ENST00000440232	NM_002691.3	202	Cac/Aac																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096328	178096328	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	317	345	0	ENST00000397062.3:c.1003A>C	p.Ser335Arg	p.S335R	ENST00000397062	NM_006164.4	335	Agc/Cgc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279782	29279782	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	55	120	0	ENST00000544604.2:c.31del	p.Ala11ProfsTer111	p.A11Pfs*111	ENST00000544604	NM_001206998.1	10	Ggg/gg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748081	41748081	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	139	253	0	ENST00000226382.2:c.688G>T	p.Gly230Trp	p.G230W	ENST00000226382	NM_003924.3	230	Ggg/Tgg																																																																															
KIT	3815	MSKCC	GRCh37	4	55597544	55597544	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	142	234	0	ENST00000288135.5:c.2192T>C	p.Val731Ala	p.V731A	ENST00000288135	NM_000222.2	731	gTt/gCt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910708	29910709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	537	442	0	ENST00000376809.5:c.250dup	p.Trp84LeufsTer15	p.W84Lfs*15	ENST00000376809	NM_002116.7	83	tat/taTt																																																																															
TAP1	6890	MSKCC	GRCh37	6	32813400	32813400	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	273	309	0	ENST00000354258.4:c.2383T>C	p.Cys795Arg	p.C795R	ENST00000354258	NM_000593.5	795	Tgc/Cgc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68972984	68972984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	153	203	0	ENST00000288368.4:c.1309G>A	p.Ala437Thr	p.A437T	ENST00000288368	NM_024870.2	437	Gca/Aca																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922254	39922254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	47	282	0	ENST00000378444.4:c.3918G>T	p.Gln1306His	p.Q1306H	ENST00000378444	NM_001123385.1	1306	caG/caT																																																																															
ATRX	546	MSKCC	GRCh37	X	76872084	76872084	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	138	198	0	ENST00000373344.5:c.5563A>G	p.Thr1855Ala	p.T1855A	ENST00000373344	NM_000489.3	1855	Aca/Gca																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0069788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	409	338	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112170647	112170647	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0069788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	65	283	0	ENST00000257430.4:c.1744-1G>A		p.X582_splice	ENST00000257430	NM_000038.5	582																																																																																
TP53	7157	MSKCC	GRCh37	17	7577523	7577524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0069788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	460	307	0	ENST00000269305.4:c.757dup	p.Thr253AsnfsTer11	p.T253Nfs*11	ENST00000269305	NM_001126112.2	253	acc/aAcc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555056	106555056	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			774	250	421	0	ENST00000369096.4:c.2173C>T	p.Arg725Ter	p.R725*	ENST00000369096	NM_001198.3	725	Cga/Tga																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271187	38271187	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs759376422		P-0069788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	158	310	0	ENST00000425967.3:c.2521C>A	p.His841Asn	p.H841N	ENST00000425967	NM_001174067.1	841	Cac/Aac																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0069789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	253	457	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577579	7577579	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	216	369	0	ENST00000269305.4:c.702C>A	p.Tyr234Ter	p.Y234*	ENST00000269305	NM_001126112.2	234	taC/taA																																																																															
APC	324	MSKCC	GRCh37	5	112173602	112173602	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	99	376	0	ENST00000257430.4:c.2311G>T	p.Glu771Ter	p.E771*	ENST00000257430	NM_000038.5	771	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	119	219	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
E2F3	1871	MSKCC	GRCh37	6	20490579	20490579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	119	394	0	ENST00000346618.3:c.1316G>A	p.Gly439Glu	p.G439E	ENST00000346618	NM_001949.4	439	gGg/gAg																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540381	23540381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	27	426	0	ENST00000380871.4:c.22C>T	p.Arg8Trp	p.R8W	ENST00000380871	NM_006167.3	8	Cgg/Tgg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139418238	139418238	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1399392600		P-0069789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	538	462	0	ENST00000277541.6:c.334C>T	p.Arg112Cys	p.R112C	ENST00000277541	NM_017617.3	112	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	70	234	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41268805	41268805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	51	319	0	ENST00000349496.5:c.1043C>T	p.Ser348Phe	p.S348F	ENST00000349496	NM_001904.3	348	tCt/tTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0069793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	13	175	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112090657	112090657	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs145945630		P-0069793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	69	271	0	ENST00000257430.4:c.70C>T	p.Arg24Ter	p.R24*	ENST00000257430	NM_000038.5	24	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0069793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	96	440	2	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175852	112175852	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	84	383	1	ENST00000257430.4:c.4561G>T	p.Glu1521Ter	p.E1521*	ENST00000257430	NM_000038.5	1521	Gaa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575138	48575138	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	69	304	0	ENST00000342988.3:c.332A>T	p.His111Leu	p.H111L	ENST00000342988	NM_005359.5	111	cAt/cTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0069809-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	157	207	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0069809-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	330	272	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
ALK	238	MSKCC	GRCh37	2	30142954	30142954	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1165932498		P-0069809-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	155	345	0	ENST00000389048.3:c.572C>T	p.Pro191Leu	p.P191L	ENST00000389048	NM_004304.4	191	cCc/cTc																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544971	86545004	+	frameshift_variant	Frame_Shift_Del	DEL	TCGGCGGCGGCCTGGCCGCCCTCGGCGTCCGCGG	TCGGCGGCGGCCTGGCCGCCCTCGGCGTCCGCGG	-			P-0069809-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	78	264	0	ENST00000262426.4:c.796_829del	p.Ser266ArgfsTer102	p.S266Rfs*102	ENST00000262426	NM_001451.2	266	TCGGCGGCGGCCTGGCCGCCCTCGGCGTCCGCGGcg/cg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59878736	59878736	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069809-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	182	233	0	ENST00000259008.2:c.1018C>G	p.Leu340Val	p.L340V	ENST00000259008	NM_032043.2	340	Ctt/Gtt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71945439	71945439	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0069809-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	148	319	0	ENST00000298229.2:c.2326+1G>A		p.X776_splice	ENST00000298229	NM_001567.3	776																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157099871	157099871	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069809-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	120	284	0	ENST00000346085.5:c.808T>A	p.Ser270Thr	p.S270T	ENST00000346085	NM_020732.3	270	Tcc/Acc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998927	100998927	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069809-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	120	350	0	ENST00000325455.5:c.875G>T	p.Gly292Val	p.G292V	ENST00000325455	NM_001202474.3	292	gGg/gTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492878	56492878	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069809-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	291	316	0	ENST00000407977.2:c.61del	p.Leu21CysfsTer30	p.L21Cfs*30	ENST00000407977		21	Ctg/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0069814-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	142	395	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81957157	81957157	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202210217		P-0069814-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	124	390	0	ENST00000359376.3:c.2375G>A	p.Arg792His	p.R792H	ENST00000359376	NM_002661.3	792	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112174696	112174696	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0069814-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	115	453	0	ENST00000257430.4:c.3405T>G	p.Tyr1135Ter	p.Y1135*	ENST00000257430	NM_000038.5	1135	taT/taG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921525	178921526	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAAAATTCTTTGTGCAACCTACGTGAA			P-0069814-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	155	286	0	ENST00000263967.3:c.1008_1034dup	p.Val344_Asn345insLysLysIleLeuCysAlaThrTyrVal	p.V344_N345insKKILCATYV	ENST00000263967	NM_006218.2	336	ata/atAAAAATTCTTTGTGCAACCTACGTGAAa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679256	88679256	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069814-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	110	387	0	ENST00000360948.2:c.781A>T	p.Thr261Ser	p.T261S	ENST00000360948	NM_001012338.2	261	Acc/Tcc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2039824	2039824	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069814-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	201	530	0	ENST00000349721.2:c.714G>T	p.Gln238His	p.Q238H	ENST00000349721	NM_003070.3	238	caG/caT																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069833-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	120	307	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0069833-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	323	266	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277275	41277275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069833-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	470	281	0	ENST00000349496.5:c.1744C>T	p.Arg582Trp	p.R582W	ENST00000349496	NM_001904.3	582	Cgg/Tgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925316	114925317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769592153		P-0069833-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	208	243	11	ENST00000543371.1:c.1403dup	p.Cys469ValfsTer8	p.C469Vfs*8	ENST00000543371	NM_001198531.1	465	aga/agAa																																																																															
APC	324	MSKCC	GRCh37	5	112173830	112173830	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069833-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	207	252	0	ENST00000257430.4:c.2539del	p.Glu847LysfsTer14	p.E847Kfs*14	ENST00000257430	NM_000038.5	847	Gaa/aa																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47600487	47600487	+	5_prime_UTR_variant	5'UTR	SNP	G	G	A			P-0069833-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	151	232	0	ENST00000395288.2:c.-137C>T		p.*46*	ENST00000395288	NM_016506.5																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0069838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	46	175	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0069838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	126	309	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591909	48591911	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0069838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	87	333	0	ENST00000342988.3:c.1076_1078del	p.Gly359del	p.G359del	ENST00000342988	NM_005359.5	358	GGA/-																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38953624	38953624	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199645898		P-0069838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	67	249	0	ENST00000357387.3:c.2729G>A	p.Arg910His	p.R910H	ENST00000357387	NM_152756.3	910	cGt/cAt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508614	106508614	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1377001952		P-0069838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	176	351	0	ENST00000359195.3:c.608C>T	p.Thr203Met	p.T203M	ENST00000359195	NM_002649.2	203	aCg/aTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121912580		P-0069838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	75	328	0	ENST00000342988.3:c.1157G>C	p.Gly386Ala	p.G386A	ENST00000342988	NM_005359.5	386	gGt/gCt																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45864880	45864880	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752646404		P-0069838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	111	451	0	ENST00000391945.4:c.1139G>A	p.Arg380Gln	p.R380Q	ENST00000391945	NM_000400.3	380	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	62	230	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462161	120462161	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	58	371	0	ENST00000256646.2:c.5555A>G	p.Glu1852Gly	p.E1852G	ENST00000256646	NM_024408.3	1852	gAg/gGg																																																																															
ALK	238	MSKCC	GRCh37	2	29416755	29416755	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	93	365	1	ENST00000389048.3:c.4198G>T	p.Glu1400Ter	p.E1400*	ENST00000389048	NM_004304.4	1400	Gaa/Taa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0069850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	418	309	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0069850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	274	393	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965476	68965476	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751712561		P-0069850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	732	443	2	ENST00000288368.4:c.1088G>A	p.Arg363Gln	p.R363Q	ENST00000288368	NM_024870.2	363	cGg/cAg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600521	10600521	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	308	505	0	ENST00000171111.5:c.1334C>T	p.Pro445Leu	p.P445L	ENST00000171111	NM_203500.1	445	cCa/cTa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435750	56435820	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGCCCATCTGCCAGGTACCCACTGCGTTCTGTGCAATAGCTTTCTCCAGATCCACTGCTGTCAGGGGGC	CTGGCCCATCTGCCAGGTACCCACTGCGTTCTGTGCAATAGCTTTCTCCAGATCCACTGCTGTCAGGGGGC	-			P-0069850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	585	514	0	ENST00000407977.2:c.1317_1387del	p.Arg439SerfsTer3	p.R439Sfs*3	ENST00000407977		439	agGCCCCCTGACAGCAGTGGATCTGGAGAAAGCTATTGCACAGAACGCAGTGGGTACCTGGCAGATGGGCCAGcc/agcc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419837	41419837	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0069850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	28	432	0	ENST00000373198.4:c.484C>A	p.Gln162Lys	p.Q162K	ENST00000373198	NM_133170.3	162	Cag/Aag																																																																															
POLE	5426	MSKCC	GRCh37	12	133256160	133256160	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	263	388	0	ENST00000320574.5:c.501G>C	p.Arg167Ser	p.R167S	ENST00000320574	NM_006231.2	167	agG/agC																																																																															
DDR2	4921	MSKCC	GRCh37	1	162722978	162722978	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	TC			P-0069850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	148	414	0	ENST00000367921.3:c.176delinsTC	p.Lys59IlefsTer17	p.K59Ifs*17	ENST00000367921	NM_006182.2	59	aAa/aTCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0069856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	135	251	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0069856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	154	231	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916924	178916924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225060		P-0069856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	52	220	0	ENST00000263967.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000263967	NM_006218.2	104	cCa/cTa																																																																															
APC	324	MSKCC	GRCh37	5	112175366	112175366	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs863225352		P-0069856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	263	247	0	ENST00000257430.4:c.4075A>T	p.Lys1359Ter	p.K1359*	ENST00000257430	NM_000038.5	1359	Aaa/Taa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118890	70118890	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	361	330	0	ENST00000245479.2:c.462C>A	p.Phe154Leu	p.F154L	ENST00000245479	NM_000346.3	154	ttC/ttA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0069856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	174	217	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs375082054		P-0069856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	96	279	0	ENST00000285071.4:c.1285C>G	p.His429Asp	p.H429D	ENST00000285071	NM_144997.5	429	Cac/Gac																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	30	372	0	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	13	324	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	8	237	0	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	37	476	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	37	365	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	42	326	0	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	15	327	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	54	274	2	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098913	47098913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	40	380	0	ENST00000409792.3:c.6361C>T	p.Arg2121Cys	p.R2121C	ENST00000409792	NM_014159.6	2121	Cgc/Tgc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	42	318	1	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																															
CCND3	896	MSKCC	GRCh37	6	41903745	41903746	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	42	399	0	ENST00000372991.4:c.811dup	p.Arg271ProfsTer53	p.R271Pfs*53	ENST00000372991	NM_001760.3	271	cgg/cCgg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348116	348116	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762212925		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	33	398	0	ENST00000262320.3:c.1390G>A	p.Glu464Lys	p.E464K	ENST00000262320	NM_003502.3	464	Gag/Aag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81946225	81946225	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1325870340		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	35	325	0	ENST00000359376.3:c.1958G>A	p.Arg653His	p.R653H	ENST00000359376	NM_002661.3	653	cGc/cAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602763	10602763	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774469695		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	42	410	0	ENST00000171111.5:c.815G>A	p.Arg272His	p.R272H	ENST00000171111	NM_203500.1	272	cGc/cAc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	46	506	2	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	42	409	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120459194	120459194	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1479580345		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	57	408	0	ENST00000256646.2:c.6151C>T	p.Arg2051Trp	p.R2051W	ENST00000256646	NM_024408.3	2051	Cgg/Tgg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149514525	149514525	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138830253		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	41	387	0	ENST00000261799.4:c.419C>T	p.Thr140Met	p.T140M	ENST00000261799	NM_002609.3	140	aCg/aTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518270	8518270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs556357771		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	33	305	1	ENST00000356435.5:c.1121C>T	p.Ala374Val	p.A374V	ENST00000356435		374	gCg/gTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs45476696		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	27	309	0	ENST00000304494.5:c.457G>T	p.Asp153Tyr	p.D153Y	ENST00000304494	NM_000077.4	153	Gac/Tac																																																																															
KDM5A	5927	MSKCC	GRCh37	12	464350	464350	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs975911125		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	31	317	0	ENST00000399788.2:c.844C>T	p.Arg282Trp	p.R282W	ENST00000399788	NM_001042603.1	282	Cgg/Tgg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779704	3779704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	30	346	1	ENST00000262367.5:c.5344G>A	p.Ala1782Thr	p.A1782T	ENST00000262367	NM_004380.2	1782	Gcg/Acg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999024	100999024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	30	392	1	ENST00000325455.5:c.778del	p.Ala260ArgfsTer41	p.A260Rfs*41	ENST00000325455	NM_001202474.3	260	Gcg/cg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434851	49434851	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1460481305		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	68	413	0	ENST00000301067.7:c.6702del	p.Arg2235AspfsTer29	p.R2235Dfs*29	ENST00000301067	NM_003482.3	2234	ccC/cc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30128549	30128549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	40	399	0	ENST00000263025.4:c.833G>A	p.Arg278Gln	p.R278Q	ENST00000263025	NM_002746.2	278	cGa/cAa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508094	106508094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1212203463		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	28	303	0	ENST00000359195.3:c.88G>A	p.Ala30Thr	p.A30T	ENST00000359195	NM_002649.2	30	Gcc/Acc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56490962	56490962	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	42	361	0	ENST00000267101.3:c.2413del	p.Ala805HisfsTer95	p.A805Hfs*95	ENST00000267101	NM_001982.3	803	cGg/cg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932436	39932436	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	47	450	0	ENST00000378444.4:c.2163del	p.Leu722TrpfsTer8	p.L722Wfs*8	ENST00000378444	NM_001123385.1	721	ggG/gg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94197308	94197308	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	31	268	0	ENST00000323929.3:c.1196del	p.Phe399SerfsTer29	p.F399Sfs*29	ENST00000323929	NM_005591.3	399	tTc/tc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324861	31324861	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	31	462	0	ENST00000412585.2:c.73+2T>C		p.X25_splice	ENST00000412585	NM_005514.6	25																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971008	21971008	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	29	352	0	ENST00000304494.5:c.350T>C	p.Leu117Pro	p.L117P	ENST00000304494	NM_000077.4	117	cTg/cCg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38947398	38947398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	31	369	0	ENST00000357387.3:c.4282G>A	p.Ala1428Thr	p.A1428T	ENST00000357387	NM_152756.3	1428	Gct/Act																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675088	40675088	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	39	390	0	ENST00000249776.8:c.52C>A	p.Leu18Met	p.L18M	ENST00000249776	NM_033286.3	18	Ctg/Atg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738779	145738779	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	70	508	0	ENST00000428558.2:c.2286G>T	p.Gln762His	p.Q762H	ENST00000428558	NM_004260.3	762	caG/caT																																																																															
NF1	4763	MSKCC	GRCh37	17	29508473	29508473	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	37	287	0	ENST00000358273.4:c.620T>C	p.Val207Ala	p.V207A	ENST00000358273	NM_001042492.2	207	gTt/gCt																																																																															
CTR9	9646	MSKCC	GRCh37	11	10796811	10796811	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	36	347	2	ENST00000361367.2:c.2949del	p.Lys983AsnfsTer22	p.K983Nfs*22	ENST00000361367	NM_014633.3	981	ccA/cc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351311	89351311	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1178134024		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	62	387	0	ENST00000301030.4:c.1639C>T	p.Arg547Trp	p.R547W	ENST00000301030	NM_001256183.1	547	Cgg/Tgg																																																																															
SCG5	6447	MSKCC	GRCh37	15	32976797	32976797	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	34	278	0	ENST00000300175.4:c.416A>G	p.Glu139Gly	p.E139G	ENST00000300175	NM_001144757.1	139	gAg/gGg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633622	69633622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	42	270	1	ENST00000334134.2:c.80G>A	p.Arg27His	p.R27H	ENST00000334134	NM_005247.2	27	cGc/cAc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856484	111856484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1398649397		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	46	372	0	ENST00000341259.2:c.535G>A	p.Ala179Thr	p.A179T	ENST00000341259	NM_005475.2	179	Gcc/Acc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473668	67473668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	31	329	0	ENST00000327367.4:c.748G>A	p.Ala250Thr	p.A250T	ENST00000327367	NM_005902.3	250	Gcc/Acc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911150	29911150	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	21	261	0	ENST00000376809.5:c.449T>C	p.Leu150Pro	p.L150P	ENST00000376809	NM_002116.7	150	cTg/cCg																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222199	6222199	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867264888		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	41	391	0	ENST00000252674.7:c.1043G>A	p.Arg348Gln	p.R348Q	ENST00000252674	NM_005934.3	348	cGg/cAg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77090378	77090378	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	33	332	0	ENST00000356341.3:c.347A>G	p.Glu116Gly	p.E116G	ENST00000356341	NM_002576.4	116	gAg/gGg																																																																															
ID3	3399	MSKCC	GRCh37	1	23885637	23885637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	44	402	0	ENST00000374561.5:c.281G>A	p.Gly94Asp	p.G94D	ENST00000374561	NM_002167.4	94	gGc/gAc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096378	178096378	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	42	412	0	ENST00000397062.3:c.953A>G	p.Asp318Gly	p.D318G	ENST00000397062	NM_006164.4	318	gAt/gGt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023279	31023279	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs958081639		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	59	347	0	ENST00000375687.4:c.2764G>A	p.Val922Ile	p.V922I	ENST00000375687	NM_015338.5	922	Gtt/Att																																																																															
RAF1	5894	MSKCC	GRCh37	3	12641300	12641300	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755384884		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	30	310	0	ENST00000251849.4:c.998G>A	p.Arg333His	p.R333H	ENST00000251849	NM_002880.3	333	cGt/cAt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39250359	39250359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	37	285	0	ENST00000402219.2:c.1210G>T	p.Ala404Ser	p.A404S	ENST00000402219	NM_005633.3	404	Gca/Tca																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346183	89346183	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	25	378	0	ENST00000301030.4:c.6767del	p.Gln2256ArgfsTer81	p.Q2256Rfs*81	ENST00000301030	NM_001256183.1	2256	cAg/cg																																																																															
AXL	558	MSKCC	GRCh37	19	41765693	41765693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	49	389	0	ENST00000301178.4:c.2569G>A	p.Ala857Thr	p.A857T	ENST00000301178	NM_021913.4	857	Gcg/Acg																																																																															
ATM	472	MSKCC	GRCh37	11	108204611	108204611	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	36	230	0	ENST00000278616.4:c.7928-2A>G		p.X2643_splice	ENST00000278616	NM_000051.3	2643																																																																																
GNA11	2767	MSKCC	GRCh37	19	3121127	3121127	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1383785285		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	38	349	0	ENST00000078429.4:c.1030G>A	p.Val344Met	p.V344M	ENST00000078429	NM_002067.2	344	Gtg/Atg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63760069	63760069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	56	309	0	ENST00000279873.7:c.722G>A	p.Cys241Tyr	p.C241Y	ENST00000279873	NM_032199.2	241	tGc/tAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357486	89357487	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	62	427	0	ENST00000301030.4:c.331dup	p.Leu111ProfsTer50	p.L111Pfs*50	ENST00000301030	NM_001256183.1	111	ctc/cCtc																																																																															
USP8	9101	MSKCC	GRCh37	15	50773790	50773790	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757075119		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	37	398	0	ENST00000307179.4:c.1331G>A	p.Arg444His	p.R444H	ENST00000307179		444	cGt/cAt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526579	31526579	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	44	245	0	ENST00000344624.3:c.461C>A	p.Pro154His	p.P154H	ENST00000344624		154	cCc/cAc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619416	1619416	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs537446058		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	44	410	0	ENST00000344749.5:c.1225G>A	p.Val409Met	p.V409M	ENST00000344749	NM_001136139.2	409	Gtg/Atg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687162	37687162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs900412874		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	33	367	0	ENST00000447079.4:c.4066C>T	p.Arg1356Ter	p.R1356*	ENST00000447079	NM_015083.1	1356	Cga/Tga																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45856395	45856395	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759307982		P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	35	389	0	ENST00000391945.4:c.1777G>A	p.Gly593Arg	p.G593R	ENST00000391945	NM_000400.3	593	Ggg/Agg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45799222	45799222	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	33	338	0	ENST00000372115.3:c.169C>T	p.Gln57Ter	p.Q57*	ENST00000372115	NM_001048171.1	57	Cag/Tag																																																																															
APLNR	187	MSKCC	GRCh37	11	57003418	57003418	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	T			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	32	424	0	ENST00000257254.3:c.1061C>A	p.Pro354His	p.P354H	ENST00000257254		354	cCc/cAc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38186969	38186970	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	39	347	0	ENST00000317025.8:c.1507dup	p.Ile503AsnfsTer2	p.I503Nfs*2	ENST00000317025	NM_023034.1	503	att/aAtt																																																																															
POLE	5426	MSKCC	GRCh37	12	133235946	133235946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	33	403	0	ENST00000320574.5:c.3210G>T	p.Lys1070Asn	p.K1070N	ENST00000320574	NM_006231.2	1070	aaG/aaT																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932806	39932806	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	33	420	0	ENST00000378444.4:c.1793T>C	p.Val598Ala	p.V598A	ENST00000378444	NM_001123385.1	598	gTg/gCg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777114	9777114	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs754116182		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	97	440	2	ENST00000377346.4:c.883del	p.Gln295ArgfsTer39	p.Q295Rfs*39	ENST00000377346	NM_005026.3	293	gCc/gc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259967	16259967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	117	464	0	ENST00000375759.3:c.7232C>T	p.Ser2411Leu	p.S2411L	ENST00000375759	NM_015001.2	2411	tCg/tTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	80	439	1	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46532698	46532698	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			816	99	496	0	ENST00000262741.5:c.380C>A	p.Pro127His	p.P127H	ENST00000262741	NM_003629.3	127	cCt/cAt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120461160	120461160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	98	264	0	ENST00000256646.2:c.5798G>A	p.Arg1933Gln	p.R1933Q	ENST00000256646	NM_024408.3	1933	cGa/cAa																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246093235	246093235	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	107	309	0	ENST00000388985.4:c.536T>C	p.Ile179Thr	p.I179T	ENST00000388985		179	aTc/aCc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	79	356	2	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																															
RET	5979	MSKCC	GRCh37	10	43622131	43622131	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	38	377	0	ENST00000355710.3:c.3148C>T	p.Arg1050Ter	p.R1050*	ENST00000355710	NM_020975.4	1050	Cga/Tga																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	65	462	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431848	49431848	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	79	441	0	ENST00000301067.7:c.9291G>T	p.Glu3097Asp	p.E3097D	ENST00000301067	NM_003482.3	3097	gaG/gaT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434562	49434562	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	46	396	1	ENST00000301067.7:c.6991del	p.Leu2331Ter	p.L2331*	ENST00000301067	NM_003482.3	2331	Ctg/tg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435198	49435198	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1349513172		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	38	324	0	ENST00000301067.7:c.6355G>A	p.Ala2119Thr	p.A2119T	ENST00000301067	NM_003482.3	2119	Gct/Act																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446415	49446415	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	102	449	0	ENST00000301067.7:c.1190A>G	p.Lys397Arg	p.K397R	ENST00000301067	NM_003482.3	397	aAg/aGg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426830	121426830	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201934320		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	28	345	0	ENST00000257555.6:c.521C>T	p.Ala174Val	p.A174V	ENST00000257555		174	gCg/gTg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	108	382	1	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26956990	26956990	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1318765332		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	87	253	0	ENST00000381527.3:c.496C>T	p.Arg166Ter	p.R166*	ENST00000381527	NM_001260.1	166	Cga/Tga																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046461	30046461	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763048984		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	91	302	0	ENST00000331968.5:c.2722C>T	p.Arg908Cys	p.R908C	ENST00000331968	NM_002742.2	908	Cgt/Tgt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30047522	30047522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	61	219	0	ENST00000331968.5:c.2479C>T	p.Arg827Cys	p.R827C	ENST00000331968	NM_002742.2	827	Cgc/Tgc																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873731	35873731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	76	315	0	ENST00000216797.5:c.120G>T	p.Glu40Asp	p.E40D	ENST00000216797	NM_020529.2	40	gaG/gaT																																																																															
AKT1	207	MSKCC	GRCh37	14	105243048	105243048	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519804		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	65	354	0	ENST00000349310.3:c.235C>A	p.Gln79Lys	p.Q79K	ENST00000349310	NM_001014432.1	79	Cag/Aag																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	94	353	2	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457409	67457409	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	98	421	0	ENST00000327367.4:c.383A>T	p.Gln128Leu	p.Q128L	ENST00000327367	NM_005902.3	128	cAg/cTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136282	2136282	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	43	424	0	ENST00000219476.3:c.4751T>C	p.Leu1584Pro	p.L1584P	ENST00000219476	NM_000548.3	1584	cTg/cCg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645275	67645276	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	120	420	0	ENST00000264010.4:c.544dup	p.Glu182GlyfsTer9	p.E182Gfs*9	ENST00000264010	NM_006565.3	180	-/G																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821382	72821382	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs774585182		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	20	337	0	ENST00000268489.5:c.10793del	p.Pro3598LeufsTer96	p.P3598Lfs*96	ENST00000268489	NM_006885.3	3598	cCt/ct																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822112	72822113	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	83	457	0	ENST00000268489.5:c.10062dup	p.Leu3355AlafsTer76	p.L3355Afs*76	ENST00000268489	NM_006885.3	3354	-/G																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827201	72827201	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs138835662		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	72	320	1	ENST00000268489.5:c.9380C>A	p.Pro3127Gln	p.P3127Q	ENST00000268489	NM_006885.3	3127	cCg/cAg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17120381	17120381	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	50	288	0	ENST00000285071.4:c.1176+2T>C		p.X392_splice	ENST00000285071	NM_144997.5	392																																																																																
NF1	4763	MSKCC	GRCh37	17	29422367	29422367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	56	242	0	ENST00000358273.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000358273	NM_001042492.2	14	Gtc/Atc																																																																															
NF1	4763	MSKCC	GRCh37	17	29663849	29663849	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867091831		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	70	310	0	ENST00000358273.4:c.6344C>T	p.Pro2115Leu	p.P2115L	ENST00000358273	NM_001042492.2	2115	cCg/cTg																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428290	33428290	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	67	332	0	ENST00000335858.7:c.497T>C	p.Leu166Pro	p.L166P	ENST00000335858	NM_133629.2	166	cTg/cCg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37856539	37856540	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	67	364	0	ENST00000269571.5:c.54dup	p.Gly19ArgfsTer91	p.G19Rfs*91	ENST00000269571		16	-/C																																																																															
RARA	5914	MSKCC	GRCh37	17	38487554	38487554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	103	398	0	ENST00000254066.5:c.89del	p.Pro30LeufsTer12	p.P30Lfs*12	ENST00000254066	NM_000964.3	28	ttC/tt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	90	465	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78858943	78858943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	74	314	0	ENST00000306801.3:c.1978C>T	p.Arg660Trp	p.R660W	ENST00000306801	NM_020761.2	660	Cgg/Tgg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375020	45375020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	80	303	0	ENST00000262160.6:c.823T>C	p.Cys275Arg	p.C275R	ENST00000262160	NM_005901.5	275	Tgt/Cgt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56414707	56414707	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	40	355	0	ENST00000348428.3:c.2108A>G	p.Gln703Arg	p.Q703R	ENST00000348428	NM_006785.3	703	cAg/cGg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226697	2226697	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1194208604		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	82	501	0	ENST00000398665.3:c.4177G>A	p.Gly1393Ser	p.G1393S	ENST00000398665	NM_032482.2	1393	Ggc/Agc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	42	327	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291573	15291573	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	78	374	0	ENST00000263388.2:c.3061T>C	p.Tyr1021His	p.Y1021H	ENST00000263388	NM_000435.2	1021	Tat/Cat																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350554	15350554	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199839337		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	24	324	0	ENST00000263377.2:c.3361C>T	p.Arg1121Cys	p.R1121C	ENST00000263377	NM_058243.2	1121	Cgc/Tgc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918991	50918991	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1228707178		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	59	306	1	ENST00000440232.2:c.2728C>T	p.Arg910Trp	p.R910W	ENST00000440232	NM_002691.3	910	Cgg/Tgg																																																																															
ALK	238	MSKCC	GRCh37	2	29446364	29446364	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754439273		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	40	411	0	ENST00000389048.3:c.3203C>T	p.Ala1068Val	p.A1068V	ENST00000389048	NM_004304.4	1068	gCc/gTc																																																																															
BARD1	580	MSKCC	GRCh37	2	215610562	215610562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146946984		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	91	276	0	ENST00000260947.4:c.1694G>A	p.Arg565His	p.R565H	ENST00000260947	NM_000465.2	565	cGt/cAt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46255777	46255777	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769864577		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	99	286	0	ENST00000371998.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371998		130	cGa/cAa																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446537	29446537	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746582115		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	78	364	0	ENST00000544604.2:c.2368G>A	p.Gly790Arg	p.G790R	ENST00000544604	NM_001206998.1	790	Ggg/Agg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266964	41266966	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	88	431	0	ENST00000349496.5:c.637_639del	p.Cys213del	p.C213del	ENST00000349496	NM_001904.3	212	cGTTgt/cgt																																																																															
MST1	4485	MSKCC	GRCh37	3	49724852	49724852	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	61	232	0	ENST00000449682.2:c.415A>G	p.Thr139Ala	p.T139A	ENST00000449682	NM_020998.3	139	Acc/Gcc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436398	52436398	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1466334306		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	64	392	0	ENST00000460680.1:c.2096G>A	p.Arg699Gln	p.R699Q	ENST00000460680	NM_004656.3	699	cGg/cAg																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981662	63981664	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-	rs779204976		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	95	490	0	ENST00000295900.6:c.2175_2177del	p.Ser728del	p.S728del	ENST00000295900	NM_000333.3	722	TCC/-																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967192	134967192	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	85	429	0	ENST00000398015.3:c.2531C>A	p.Pro844His	p.P844H	ENST00000398015	NM_004441.4	844	cCc/cAc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185198255	185198255	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759993681		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	112	365	0	ENST00000265026.3:c.2737G>A	p.Val913Met	p.V913M	ENST00000265026	NM_004721.4	913	Gtg/Atg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505595	186505595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	89	293	0	ENST00000323963.5:c.1003C>T	p.Arg335Cys	p.R335C	ENST00000323963		335	Cgc/Tgc																																																																															
KIT	3815	MSKCC	GRCh37	4	55594191	55594191	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	100	274	0	ENST00000288135.5:c.1894A>C	p.Thr632Pro	p.T632P	ENST00000288135	NM_000222.2	632	Aca/Cca																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217268	66217268	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	41	333	1	ENST00000273854.3:c.2347G>T	p.Gly783Cys	p.G783C	ENST00000273854	NM_004439.5	783	Ggt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	61	297	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																															
TERT	7015	MSKCC	GRCh37	5	1278878	1278878	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	92	381	2	ENST00000310581.5:c.2164del	p.Gln722ArgfsTer45	p.Q722Rfs*45	ENST00000310581	NM_198253.2	722	Cag/ag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180650	56180650	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1392619454		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	62	243	0	ENST00000399503.3:c.3979G>C	p.Ala1327Pro	p.A1327P	ENST00000399503	NM_005921.1	1327	Gca/Cca																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755681	57755681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	86	334	0	ENST00000274289.3:c.106C>T	p.Pro36Ser	p.P36S	ENST00000274289	NM_006622.3	36	Ccg/Tcg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	79	274	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112176661	112176661	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	95	405	0	ENST00000257430.4:c.5375del	p.Asn1792MetfsTer8	p.N1792Mfs*8	ENST00000257430	NM_000038.5	1790	agA/ag																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524318	176524318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	82	375	0	ENST00000292408.4:c.2179C>T	p.His727Tyr	p.H727Y	ENST00000292408	NM_213647.1	727	Cac/Tac																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638138	176638138	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	110	377	0	ENST00000439151.2:c.2738T>C	p.Met913Thr	p.M913T	ENST00000439151	NM_022455.4	913	aTg/aCg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	115	349	1	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176696802	176696802	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	69	317	0	ENST00000439151.2:c.5508del	p.Ala1837LeufsTer12	p.A1837Lfs*12	ENST00000439151	NM_022455.4	1835	Aaa/aa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057792	180057792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	59	324	0	ENST00000261937.6:c.163C>T	p.His55Tyr	p.H55Y	ENST00000261937	NM_182925.4	55	Cac/Tac																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	71	376	2	ENST00000261937.6:c.89del	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911286	29911286	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs281864758		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	47	352	0	ENST00000376809.5:c.585C>A	p.Tyr195Ter	p.Y195*	ENST00000376809	NM_002116.7	195	taC/taA																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323120	31323120	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	48	478	0	ENST00000412585.2:c.869T>C	p.Leu290Pro	p.L290P	ENST00000412585	NM_005514.6	290	cTg/cCg																																																																															
STK19	8859	MSKCC	GRCh37	6	31947264	31947264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	108	317	0	ENST00000375331.2:c.737G>A	p.Cys246Tyr	p.C246Y	ENST00000375331	NM_004197.1	246	tGt/tAt																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800446	32800446	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs781370484		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	61	427	0	ENST00000374899.4:c.1101G>A	p.Trp367Ter	p.W367*	ENST00000374899	NM_018833.2	367	tgG/tgA																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652020	36652020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1407742055		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	109	411	0	ENST00000244741.5:c.142C>T	p.Arg48Ter	p.R48*	ENST00000244741	NM_000389.4	48	Cga/Tga																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200368	138200368	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs536079833		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	75	435	0	ENST00000237289.4:c.1786C>T	p.Arg596Trp	p.R596W	ENST00000237289	NM_001270507.1	596	Cgg/Tgg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527697	157527697	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745372243		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	104	349	0	ENST00000346085.5:c.5422C>T	p.Arg1808Cys	p.R1808C	ENST00000346085	NM_020732.3	1808	Cgt/Tgt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509432	106509432	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs567756361		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	41	399	0	ENST00000359195.3:c.1426C>T	p.Arg476Cys	p.R476C	ENST00000359195	NM_002649.2	476	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845684	151845684	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	122	413	0	ENST00000262189.6:c.13328A>G	p.Gln4443Arg	p.Q4443R	ENST00000262189	NM_170606.2	4443	cAg/cGg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879336	151879336	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	93	423	0	ENST00000262189.6:c.5609A>G	p.Gln1870Arg	p.Q1870R	ENST00000262189	NM_170606.2	1870	cAg/cGg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69005911	69005912	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	54	298	0	ENST00000288368.4:c.2327dup	p.Gly777TrpfsTer3	p.G777Wfs*3	ENST00000288368	NM_024870.2	774	-/C																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521487	8521487	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758577045		P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	94	327	0	ENST00000356435.5:c.751G>A	p.Gly251Arg	p.G251R	ENST00000356435		251	Gga/Aga																																																																															
ABL1	25	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	51	396	0	ENST00000318560.5:c.2352del	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139403488	139403488	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	44	383	0	ENST00000277541.6:c.3005T>C	p.Ile1002Thr	p.I1002T	ENST00000277541	NM_017617.3	1002	aTc/aCc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932852	39932852	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	106	205	0	ENST00000378444.4:c.1747del	p.Thr583ProfsTer6	p.T583Pfs*6	ENST00000378444	NM_001123385.1	583	Acc/cc																																																																															
ARAF	369	MSKCC	GRCh37	X	47422443	47422443	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	52	172	0	ENST00000377045.4:c.77C>A	p.Pro26His	p.P26H	ENST00000377045	NM_001654.4	26	cCc/cAc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10292754	10292754	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	31	244	0	ENST00000340748.4:c.81-1G>A		p.X27_splice	ENST00000340748		27																																																																																
DNMT3B	1789	MSKCC	GRCh37	20	31395612	31395612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	61	389	0	ENST00000328111.2:c.2465G>A	p.Gly822Asp	p.G822D	ENST00000328111	NM_006892.3	822	gGc/gAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0069906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	102	332	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0069906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	171	596	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36938264	36938264	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150616658		P-0069906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	57	463	0	ENST00000361632.4:c.697C>T	p.Arg233Trp	p.R233W	ENST00000361632		233	Cgg/Tgg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135776157	135776157	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	33	395	0	ENST00000298552.3:c.2570A>T	p.Glu857Val	p.E857V	ENST00000298552	NM_001162426.1	857	gAg/gTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902172	50902172	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779418268		P-0069906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	132	413	0	ENST00000440232.2:c.64C>T	p.Leu22Phe	p.L22F	ENST00000440232	NM_002691.3	22	Ctc/Ttc																																																																															
AR	367	MSKCC	GRCh37	X	66765979	66765979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	179	525	0	ENST00000374690.3:c.991G>A	p.Ala331Thr	p.A331T	ENST00000374690	NM_000044.3	331	Gct/Act																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987154	36987154	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs575848748		P-0069906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	68	449	0	ENST00000354822.5:c.535G>A	p.Val179Met	p.V179M	ENST00000354822	NM_001079668.2	179	Gtg/Atg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177087	56177087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	44	343	0	ENST00000399503.3:c.2357C>T	p.Pro786Leu	p.P786L	ENST00000399503	NM_005921.1	786	cCt/cTt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609676	81609676	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	83	589	1	ENST00000298171.2:c.1274G>T	p.Ser425Ile	p.S425I	ENST00000298171	NM_000369.2	425	aGt/aTt																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813397	102813397	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587779350		P-0069906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	70	410	0	ENST00000307046.8:c.292C>T	p.Arg98Trp	p.R98W	ENST00000307046	NM_001111285.1	98	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492891	56492892	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0069906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	146	454	0	ENST00000407977.2:c.46_47dup	p.Leu17CysfsTer2	p.L17Cfs*2	ENST00000407977		16	ctg/ctCTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0069945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	29	411	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953228	81953228	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369760877		P-0069945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	20	390	0	ENST00000359376.3:c.2194C>T	p.Arg732Cys	p.R732C	ENST00000359376	NM_002661.3	732	Cgc/Tgc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258986	153258986	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	20	349	0	ENST00000281708.4:c.829C>T	p.Gln277Ter	p.Q277*	ENST00000281708	NM_033632.3	277	Caa/Taa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687345	37687345	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs572934069		P-0069945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	19	410	0	ENST00000447079.4:c.4249G>A	p.Gly1417Arg	p.G1417R	ENST00000447079	NM_015083.1	1417	Ggg/Agg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742951	17742951	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1332082680		P-0069962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	110	389	0	ENST00000250003.3:c.859G>A	p.Ala287Thr	p.A287T	ENST00000250003	NM_002478.4	287	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0069962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	210	348	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40877385	40877385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			979	78	334	0	ENST00000373198.4:c.2311G>A	p.Ala771Thr	p.A771T	ENST00000373198	NM_133170.3	771	Gct/Act																																																																															
APC	324	MSKCC	GRCh37	5	112174868	112174868	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	176	376	0	ENST00000257430.4:c.3577C>T	p.Gln1193Ter	p.Q1193*	ENST00000257430	NM_000038.5	1193	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	150	380	1	ENST00000257430.4:c.3919dup	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251933	153251933	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0069962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	133	329	0	ENST00000281708.4:c.1073del	p.Gln358ArgfsTer19	p.Q358Rfs*19	ENST00000281708	NM_033632.3	358	cAg/cg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0069982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	2918	338	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0069982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	84	382	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112174276	112174276	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	62	359	0	ENST00000257430.4:c.2985C>A	p.Cys995Ter	p.C995*	ENST00000257430	NM_000038.5	995	tgC/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112175765	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	T			P-0069982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	61	361	0	ENST00000257430.4:c.4474_4475delinsT	p.Ala1492SerfsTer15	p.A1492Sfs*15	ENST00000257430	NM_000038.5	1492	GCc/Tc																																																																															
MSI2	124540	MSKCC	GRCh37	17	55752389	55752389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116924898		P-0069982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	30	319	0	ENST00000284073.2:c.847G>A	p.Ala283Thr	p.A283T	ENST00000284073	NM_138962.2	283	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0069984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	37	384	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157511345	157511345	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0069984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	39	368	0	ENST00000346085.5:c.3862+1G>T		p.X1288_splice	ENST00000346085	NM_020732.3	1288																																																																																
JAK2	3717	MSKCC	GRCh37	9	5069978	5069978	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	32	383	0	ENST00000381652.3:c.1567T>C	p.Ser523Pro	p.S523P	ENST00000381652	NM_004972.3	523	Tca/Cca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0069985-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	314	289	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916210	9916210	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069985-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	91	408	0	ENST00000330684.3:c.2079C>G	p.Asn693Lys	p.N693K	ENST00000330684	NM_001134407.1	693	aaC/aaG																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21350999	21350999	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1189643616		P-0069985-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	141	347	0	ENST00000215739.8:c.2234C>A	p.Ala745Asp	p.A745D	ENST00000215739	NM_006767.3	745	gCc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0069994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	171	331	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0069994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	59	295	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920447	114920447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	84	238	0	ENST00000543371.1:c.1388G>A	p.Cys463Tyr	p.C463Y	ENST00000543371	NM_001198531.1	463	tGc/tAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0069994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	103	171	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374845	45374845	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs367537999		P-0069994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	112	237	0	ENST00000262160.6:c.997+1G>A		p.X333_splice	ENST00000262160	NM_005901.5	333																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0070008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	117	317	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396164	396164	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753904293		P-0070008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	29	288	0	ENST00000262320.3:c.862G>A	p.Glu288Lys	p.E288K	ENST00000262320	NM_003502.3	288	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68847240	68847240	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372838203		P-0070008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	33	271	0	ENST00000261769.5:c.1162G>A	p.Glu388Lys	p.E388K	ENST00000261769	NM_004360.3	388	Gag/Aag																																																																															
USP8	9101	MSKCC	GRCh37	15	50774257	50774257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	28	308	0	ENST00000307179.4:c.1798G>A	p.Gly600Ser	p.G600S	ENST00000307179		600	Ggc/Agc																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5522550	5522550	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	27	204	0	ENST00000397747.3:c.4A>G	p.Ile2Val	p.I2V	ENST00000397747	NM_025239.3	2	Atc/Gtc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0070018-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	66	289	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0070018-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	165	642	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0070018-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	102	576	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070018-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	158	559	0	ENST00000342988.3:c.1610A>C	p.Asp537Ala	p.D537A	ENST00000342988	NM_005359.5	537	gAc/gCc																																																																															
NF2	4771	MSKCC	GRCh37	22	30070875	30070875	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776109136		P-0070018-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	54	474	1	ENST00000338641.4:c.1391C>T	p.Ala464Val	p.A464V	ENST00000338641	NM_000268.3	464	gCg/gTg																																																																															
REL	5966	MSKCC	GRCh37	2	61149543	61149543	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759650174		P-0070018-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	139	556	0	ENST00000295025.8:c.1733C>T	p.Ser578Leu	p.S578L	ENST00000295025	NM_002908.2	578	tCg/tTg																																																																															
MDM2	4193	MSKCC	GRCh37	12	69222644	69222644	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070018-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	113	448	0	ENST00000462284.1:c.617G>C	p.Cys206Ser	p.C206S	ENST00000462284	NM_002392.5	206	tGt/tCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0070018-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	113	315	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200772	128200772	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070018-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	107	475	0	ENST00000341105.2:c.1033G>C	p.Ala345Pro	p.A345P	ENST00000341105	NM_032638.4	345	Gcc/Ccc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38189001	38189001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070018-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	125	466	0	ENST00000317025.8:c.1013A>G	p.Glu338Gly	p.E338G	ENST00000317025	NM_023034.1	338	gAa/gGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			747	288	411	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			492	627	522	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			85	235	345	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139404290	139404290	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs557049479		P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			471	660	532	2	ENST00000277541.6:c.2864G>A	p.Arg955His	p.R955H	ENST00000277541	NM_017617.3	955	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			15	33	153	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519896		P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			96	558	352	0	ENST00000281708.4:c.1514G>A	p.Arg505His	p.R505H	ENST00000281708	NM_033632.3	505	cGc/cAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98242853	98242853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779870576		P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			461	105	342	0	ENST00000331920.6:c.764G>A	p.Arg255Gln	p.R255Q	ENST00000331920	NM_000264.3	255	cGg/cAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274277	5274277	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1327116960		P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			488	308	457	0	ENST00000357368.4:c.170C>T	p.Thr57Met	p.T57M	ENST00000357368	NM_002850.3	57	aCg/aTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134598	2134598	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs45517340		P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			223	753	584	2	ENST00000219476.3:c.4375C>T	p.Arg1459Ter	p.R1459*	ENST00000219476	NM_000548.3	1459	Cga/Tga																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22127176	22127176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			289	363	335	0	ENST00000215832.6:c.952G>A	p.Asp318Asn	p.D318N	ENST00000215832	NM_002745.4	318	Gac/Aac																																																																															
EP300	2033	MSKCC	GRCh37	22	41533772	41533772	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137853038		P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			349	93	228	0	ENST00000263253.7:c.1738C>T	p.Arg580Ter	p.R580*	ENST00000263253	NM_001429.3	580	Cga/Tga																																																																															
RHEB	6009	MSKCC	GRCh37	7	151164278	151164278	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781512533		P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			313	256	243	0	ENST00000262187.5:c.482G>A	p.Arg161Gln	p.R161Q	ENST00000262187	NM_005614.3	161	cGa/cAa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470516	25470516	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs778270132		P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			512	620	428	0	ENST00000264709.3:c.958C>T	p.Arg320Ter	p.R320*	ENST00000264709	NM_175629.2	320	Cga/Tga																																																																															
TERT	7015	MSKCC	GRCh37	5	1279522	1279522	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368430301		P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	328	355	0	ENST00000310581.5:c.2014C>T	p.Arg672Cys	p.R672C	ENST00000310581	NM_198253.2	672	Cgc/Tgc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434772	110434772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			865	318	506	0	ENST00000375856.3:c.3629C>T	p.Ala1210Val	p.A1210V	ENST00000375856	NM_003749.2	1210	gCg/gTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342932	118342932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			325	88	342	0	ENST00000534358.1:c.1058G>A	p.Arg353Gln	p.R353Q	ENST00000534358	NM_005933.3	353	cGa/cAa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390545	139390545	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767929506		P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			839	289	421	0	ENST00000277541.6:c.7646G>A	p.Arg2549His	p.R2549H	ENST00000277541	NM_017617.3	2549	cGc/cAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118391551	118391551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			424	119	306	0	ENST00000534358.1:c.11464C>T	p.Arg3822Cys	p.R3822C	ENST00000534358	NM_005933.3	3822	Cgc/Tgc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238758086		P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			555	362	486	2	ENST00000358026.2:c.2729C>T	p.Thr910Met	p.T910M	ENST00000358026	NM_001128849.1	910	aCg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438061	49438061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			849	326	458	0	ENST00000301067.7:c.5110C>T	p.Arg1704Trp	p.R1704W	ENST00000301067	NM_003482.3	1704	Cgg/Tgg																																																																															
MITF	4286	MSKCC	GRCh37	3	70014076	70014076	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759306986		P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			557	171	385	0	ENST00000352241.4:c.1240C>T	p.Arg414Trp	p.R414W	ENST00000352241	NM_198159.2	414	Cgg/Tgg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12044495	12044495	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1372846289		P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			300	133	296	0	ENST00000353533.5:c.1118G>A	p.Arg373His	p.R373H	ENST00000353533	NM_003010.3	373	cGt/cAt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156830788	156830788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			791	263	347	0	ENST00000524377.1:c.62G>A	p.Ser21Asn	p.S21N	ENST00000524377	NM_002529.3	21	aGc/aAc																																																																															
CTR9	9646	MSKCC	GRCh37	11	10796818	10796818	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			111	88	325	0	ENST00000361367.2:c.2950C>T	p.Arg984Ter	p.R984*	ENST00000361367	NM_014633.3	984	Cga/Tga																																																																															
FANCC	2176	MSKCC	GRCh37	9	97912355	97912355	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs538875706		P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	395	348	0	ENST00000289081.3:c.536G>A	p.Arg179Gln	p.R179Q	ENST00000289081	NM_000136.2	179	cGa/cAa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348134	348134	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1047458992		P-0070034-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			181	690	533	2	ENST00000262320.3:c.1372G>A	p.Gly458Arg	p.G458R	ENST00000262320	NM_003502.3	458	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0070069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			53	263	491	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112174502	112174502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876659539		P-0070069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	119	503	0	ENST00000257430.4:c.3211C>T	p.Gln1071Ter	p.Q1071*	ENST00000257430	NM_000038.5	1071	Caa/Taa																																																																															
AXL	558	MSKCC	GRCh37	19	41737106	41737106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771116052		P-0070069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	88	577	0	ENST00000301178.4:c.686G>A	p.Arg229His	p.R229H	ENST00000301178	NM_021913.4	229	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175217	112175217	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	65	481	0	ENST00000257430.4:c.3929del	p.Lys1310ArgfsTer11	p.K1310Rfs*11	ENST00000257430	NM_000038.5	1309	gAa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0070069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	150	406	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245453	153245453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			42	95	460	0	ENST00000281708.4:c.1738C>T	p.His580Tyr	p.H580Y	ENST00000281708	NM_033632.3	580	Cac/Tac																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164673	36164673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	45	506	0	ENST00000300305.3:c.1202C>A	p.Pro401His	p.P401H	ENST00000300305		401	cCc/cAc																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6213987	6213987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			64	41	474	0	ENST00000252674.7:c.1370C>T	p.Pro457Leu	p.P457L	ENST00000252674	NM_005934.3	457	cCc/cTc																																																																															
ALK	238	MSKCC	GRCh37	2	29416215	29416215	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370947313		P-0070069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	37	550	0	ENST00000389048.3:c.4738G>A	p.Gly1580Arg	p.G1580R	ENST00000389048	NM_004304.4	1580	Ggg/Agg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815356	32815356	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	122	553	0	ENST00000354258.4:c.2017A>C	p.Thr673Pro	p.T673P	ENST00000354258	NM_000593.5	673	Aca/Cca																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986982	36986982	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			57	43	354	0	ENST00000354822.5:c.707A>T	p.Lys236Met	p.K236M	ENST00000354822	NM_001079668.2	236	aAg/aTg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40876355	40876356	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATGATGGGAACCAATG			P-0070069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	28	439	0	ENST00000428826.2:c.317_333dup	p.Tyr112HisfsTer18	p.Y112Hfs*18	ENST00000428826		111	-/CATTGGTTCCCATCATG																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2084163	2084163	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	67	358	0	ENST00000349721.2:c.2493G>T	p.Glu831Asp	p.E831D	ENST00000349721	NM_003070.3	831	gaG/gaT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47142996	47142996	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			61	122	331	0	ENST00000409792.3:c.4967T>G	p.Val1656Gly	p.V1656G	ENST00000409792	NM_014159.6	1656	gTt/gGt																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150923846	150923846	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1318512460		P-0070069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	49	523	0	ENST00000271640.5:c.2219A>C	p.Lys740Thr	p.K740T	ENST00000271640	NM_001145415.1	740	aAg/aCg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44966688	44966688	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	39	466	0	ENST00000377967.4:c.3912G>C	p.Gln1304His	p.Q1304H	ENST00000377967	NM_021140.2	1304	caG/caC																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256734	16256748	+	inframe_deletion	In_Frame_Del	DEL	TGAAGATGAACTAAA	TGAAGATGAACTAAA	-			P-0070069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	43	557	0	ENST00000375759.3:c.4000_4014del	p.Glu1334_Asn1338del	p.E1334_N1338del	ENST00000375759	NM_015001.2	1333	tcTGAAGATGAACTAAAt/tct																																																																															
PHF6	84295	MSKCC	GRCh37	X	133527599	133527599	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0070069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	69	442	0	ENST00000332070.3:c.309C>G	p.Tyr103Ter	p.Y103*	ENST00000332070	NM_032458.2	103	taC/taG																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858765	9858765	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	80	489	0	ENST00000330684.3:c.2636A>C	p.Lys879Thr	p.K879T	ENST00000330684	NM_001134407.1	879	aAg/aCg																																																																															
MGA	23269	MSKCC	GRCh37	15	42054484	42054496	+	frameshift_variant	Frame_Shift_Del	DEL	AGATCTTGGACAG	AGATCTTGGACAG	-			P-0070069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	44	445	0	ENST00000219905.7:c.7669_7681del	p.Asp2557CysfsTer3	p.D2557Cfs*3	ENST00000219905	NM_001164273.1	2556	gtAGATCTTGGACAG/gt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104022	69104022	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0070069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	41	384	0	ENST00000288368.4:c.4412A>C	p.Lys1471Thr	p.K1471T	ENST00000288368	NM_024870.2	1471	aAg/aCg																																																																															
CDC42	998	MSKCC	GRCh37	1	22412934	22412934	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0070076-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	33	219	0	ENST00000344548.3:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000344548	NM_001039802.1	61	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0070076-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	129	362	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29654858	29654858	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1131691117		P-0070076-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	166	224	0	ENST00000358273.4:c.5609+1G>A		p.X1870_splice	ENST00000358273	NM_001042492.2	1870																																																																																
RNF43	54894	MSKCC	GRCh37	17	56440948	56440949	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCGCCAT			P-0070076-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	184	419	0	ENST00000407977.2:c.382_388dup	p.Gly130AspfsTer4	p.G130Dfs*4	ENST00000407977		130	ggt/gATGGCGGgt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279600	18279600	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1222199135		P-0070076-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	65	371	0	ENST00000222254.8:c.1873G>C	p.Gly625Arg	p.G625R	ENST00000222254	NM_005027.3	625	Ggc/Cgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980854	40980854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070076-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	47	334	0	ENST00000373198.4:c.1632G>T	p.Lys544Asn	p.K544N	ENST00000373198	NM_133170.3	544	aaG/aaT																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62298905	62298905	+	missense_variant,splice_region_variant,NMD_transcript_variant	Missense_Mutation	SNP	A	A	G			P-0070076-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	132	317	0	ENST00000482936.1:c.698A>G	p.Lys233Arg	p.K233R	ENST00000482936		233	aAg/aGg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21347107	21347107	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1280670708		P-0070076-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	132	337	0	ENST00000215739.8:c.1174G>A	p.Ala392Thr	p.A392T	ENST00000215739	NM_006767.3	392	Gcg/Acg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279862	29279870	+	inframe_deletion	In_Frame_Del	DEL	GCTGCCGCT	GCTGCCGCT	-			P-0070076-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			71	47	131	0	ENST00000544604.2:c.113_121del	p.Pro38_Leu40del	p.P38_L40del	ENST00000544604	NM_001206998.1	36	ccGCTGCCGCTg/ccg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0070150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	50	385	0				ENST00000310581	NM_198253.2																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0070150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	37	174	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0070150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	104	444	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853332	151853332	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	95	388	0	ENST00000262189.6:c.11770G>T	p.Glu3924Ter	p.E3924*	ENST00000262189	NM_170606.2	3924	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0070150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	138	291	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222053	2222053	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200823820		P-0070150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	187	515	0	ENST00000398665.3:c.2885C>T	p.Pro962Leu	p.P962L	ENST00000398665	NM_032482.2	962	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0070185-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	520	703	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0070185-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	403	502	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043381	180043381	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760077499		P-0070185-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	78	510	0	ENST00000261937.6:c.3205G>A	p.Val1069Ile	p.V1069I	ENST00000261937	NM_182925.4	1069	Gtc/Atc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492803	56492803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070185-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	631	552	0	ENST00000407977.2:c.136G>A	p.Ala46Thr	p.A46T	ENST00000407977		46	Gct/Act																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18650681	18650681	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0070185-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	45	434	0	ENST00000266497.5:c.2892A>C	p.Gln964His	p.Q964H	ENST00000266497		964	caA/caC																																																																															
CDK8	1024	MSKCC	GRCh37	13	26975485	26975602	+	splice_donor_variant,splice_acceptor_variant,intron_variant	Splice_Site	DEL	GTAAGTATTAAAGTACTGTTAGCAGCTTCTTGTTTCGTGAATGCCTCCATAACATTTTCCATTGTGGGTATATTTTGTTCTCCCTCTGAGCTGAACTTTTTCTGTTTAACCAATTGAG	GTAAGTATTAAAGTACTGTTAGCAGCTTCTTGTTTCGTGAATGCCTCCATAACATTTTCCATTGTGGGTATATTTTGTTCTCCCTCTGAGCTGAACTTTTTCTGTTTAACCAATTGAG	-			P-0070185-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1068	67	525	0	ENST00000381527.3:c.1110+1_1111-1del		p.X370_splice	ENST00000381527	NM_001260.1	370																																																																																
CDK8	1024	MSKCC	GRCh37	13	26974688	26975405	+	splice_donor_variant,splice_acceptor_variant,intron_variant	Splice_Site	DEL	GTAAGTGGCCTAGTTGGTTAACTCATCAGCATGATGGAAGTTTTGGAGTATGCTTTCTTCTGCTTGTCAGCTCTTAAGTTGCTCCTCCTCTTATATGGGAACCCAAGGAAATCCTTTATGACAAGCAAAAATGAGCTTTGCTGATTAAAGTGTCATTTAGGGGCTTTCCAGTTAAGAGGCATTCCTGTTCATCTCTTGCTTTATGAAATGCTGATCACATTAGTTTCAGTAGTGATCCAGCTATTCAGTGACAGGTTGGTTATGCGTGCTGTAGCTCCTTACTGTCTGCAGTTACAGTTTCATGTTCCAAAATTGCAAATATTCCCAAATGTGTTCCCTATACCATCTTTTGTTTTGTTAATAAATGTAGTAGGAAGGGTAAAACAAAAATTACCTTTGAATGGTGACACATACTTCAGCTAGAATCTATATTTGGTCTGTATTAATAGAAGAGTAATGCTGGGATAAAAGAAGAAAGCTGAATCATACTCGATGATTATTGATCATTTGTATACAGCTCAAGCCCTCAAGTAGCCTGCTGTAATATTACTAGTTACAAAGAAAAGATTCGTTTTGTCACAGTTACATGAAAGGTGCTTATATTTGCAAATATGGAGACAAAGTTCATCTTAAAAGATTAAAATGAGAATCTCCTAAATGAAGCATTTGGAATATTGATTAGTATACCAGAAATGGTTTTTCTTTTTCTTATGATCAG	GTAAGTGGCCTAGTTGGTTAACTCATCAGCATGATGGAAGTTTTGGAGTATGCTTTCTTCTGCTTGTCAGCTCTTAAGTTGCTCCTCCTCTTATATGGGAACCCAAGGAAATCCTTTATGACAAGCAAAAATGAGCTTTGCTGATTAAAGTGTCATTTAGGGGCTTTCCAGTTAAGAGGCATTCCTGTTCATCTCTTGCTTTATGAAATGCTGATCACATTAGTTTCAGTAGTGATCCAGCTATTCAGTGACAGGTTGGTTATGCGTGCTGTAGCTCCTTACTGTCTGCAGTTACAGTTTCATGTTCCAAAATTGCAAATATTCCCAAATGTGTTCCCTATACCATCTTTTGTTTTGTTAATAAATGTAGTAGGAAGGGTAAAACAAAAATTACCTTTGAATGGTGACACATACTTCAGCTAGAATCTATATTTGGTCTGTATTAATAGAAGAGTAATGCTGGGATAAAAGAAGAAAGCTGAATCATACTCGATGATTATTGATCATTTGTATACAGCTCAAGCCCTCAAGTAGCCTGCTGTAATATTACTAGTTACAAAGAAAAGATTCGTTTTGTCACAGTTACATGAAAGGTGCTTATATTTGCAAATATGGAGACAAAGTTCATCTTAAAAGATTAAAATGAGAATCTCCTAAATGAAGCATTTGGAATATTGATTAGTATACCAGAAATGGTTTTTCTTTTTCTTATGATCAG	-			P-0070185-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			868	81	358	0	ENST00000381527.3:c.1031+1_1032-1del		p.X344_splice	ENST00000381527	NM_001260.1	344																																																																																
ALB	213	MSKCC	GRCh37	4	74279239	74279239	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs150388973		P-0070185-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	68	540	0	ENST00000295897.4:c.946G>T	p.Glu316Ter	p.E316*	ENST00000295897	NM_000477.5	316	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750600586		P-0070196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	283	423	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112175219	112175219	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0070196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	356	359	0	ENST00000257430.4:c.3928A>T	p.Lys1310Ter	p.K1310*	ENST00000257430	NM_000038.5	1310	Aag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0070196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	177	256	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986742	36986742	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778389039		P-0070196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	150	435	0	ENST00000354822.5:c.947C>T	p.Ala316Val	p.A316V	ENST00000354822	NM_001079668.2	316	gCg/gTg																																																																															
CTR9	9646	MSKCC	GRCh37	11	10789533	10789533	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	134	500	0	ENST00000361367.2:c.1867G>T	p.Glu623Ter	p.E623*	ENST00000361367	NM_014633.3	623	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0070256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	35	333	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0070256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	60	436	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
AXL	558	MSKCC	GRCh37	19	41758348	41758348	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs762510681		P-0070256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	28	278	0	ENST00000301178.4:c.1804G>A	p.Gly602Ser	p.G602S	ENST00000301178	NM_021913.4	602	Ggt/Agt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0070256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	57	321	2	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435689	110435689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	46	378	0	ENST00000375856.3:c.2712G>A	p.Met904Ile	p.M904I	ENST00000375856	NM_003749.2	904	atG/atA																																																																															
APC	324	MSKCC	GRCh37	5	112174241	112174241	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	59	412	0	ENST00000257430.4:c.2950G>T	p.Glu984Ter	p.E984*	ENST00000257430	NM_000038.5	984	Gaa/Taa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729104	66729109	+	inframe_deletion	In_Frame_Del	DEL	ACCCGC	ACCCGC	-			P-0070256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	58	373	0	ENST00000307102.5:c.313_318del	p.Pro105_Ala106del	p.P105_A106del	ENST00000307102	NM_002755.3	104	aaACCCGCa/aaa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11217330	11217330	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	89	284	0	ENST00000361445.4:c.4348T>G	p.Tyr1450Asp	p.Y1450D	ENST00000361445	NM_004958.3	1450	Tat/Gat																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332874	152332874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	39	283	0	ENST00000206249.3:c.1180C>T	p.Arg394Cys	p.R394C	ENST00000206249	NM_000125.3	394	Cgc/Tgc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88681411	88681411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	14	145	0	ENST00000372037.3:c.1301G>A	p.Gly434Asp	p.G434D	ENST00000372037	NM_004329.2	434	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0070261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	159	399	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871249	12871249	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0070261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	151	224	0	ENST00000228872.4:c.475+1G>A		p.X159_splice	ENST00000228872	NM_004064.3	159																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	107	193	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097242	11097242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	124	290	0	ENST00000344626.4:c.733G>A	p.Ala245Thr	p.A245T	ENST00000344626	NM_003072.3	245	Gca/Aca																																																																															
KDR	3791	MSKCC	GRCh37	4	55964431	55964431	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	69	225	0	ENST00000263923.4:c.2382del	p.Glu796AsnfsTer2	p.E796Nfs*2	ENST00000263923	NM_002253.2	794	ggA/gg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248495	212248495	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			728	53	401	0	ENST00000342788.4:c.3772T>C	p.Tyr1258His	p.Y1258H	ENST00000342788	NM_005235.2	1258	Tac/Cac																																																																															
ERG	2078	MSKCC	GRCh37	21	39764321	39764321	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	85	296	0	ENST00000288319.7:c.791G>C	p.Gly264Ala	p.G264A	ENST00000288319	NM_182918.3	264	gGc/gCc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226478	2226478	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757732619		P-0070261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	247	370	0	ENST00000398665.3:c.3958G>A	p.Gly1320Arg	p.G1320R	ENST00000398665	NM_032482.2	1320	Ggg/Agg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69050723	69050723	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	43	196	0	ENST00000288368.4:c.4058A>T	p.Lys1353Ile	p.K1353I	ENST00000288368	NM_024870.2	1353	aAa/aTa																																																																															
APC	324	MSKCC	GRCh37	5	112175509	112175511	+	frameshift_variant	Frame_Shift_Del	DEL	GAG	GAG	C			P-0070261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	236	317	0	ENST00000257430.4:c.4218_4220delinsC	p.Gln1406HisfsTer2	p.Q1406Hfs*2	ENST00000257430	NM_000038.5	1406	caGAGt/caCt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0070279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	20	259	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044850	47044850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	30	348	0	ENST00000329236.7:c.1942C>T	p.Arg648Ter	p.R648*	ENST00000329236	NM_001204466.1	648	Cga/Tga																																																																															
STAG2	10735	MSKCC	GRCh37	X	123205060	123205060	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1364412973		P-0070279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	22	197	0	ENST00000218089.9:c.2420G>A	p.Arg807His	p.R807H	ENST00000218089	NM_001042749.1	807	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0070279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	10	286	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0070292-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	89	508	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0070292-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	132	331	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858094	9858094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748879665		P-0070292-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	51	543	0	ENST00000330684.3:c.3307C>T	p.Arg1103Cys	p.R1103C	ENST00000330684	NM_001134407.1	1103	Cgc/Tgc																																																																															
KLF5	688	MSKCC	GRCh37	13	73636669	73636669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070292-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	91	626	0	ENST00000377687.4:c.932G>T	p.Ser311Ile	p.S311I	ENST00000377687	NM_001730.3	311	aGt/aTt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0070347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	35	329	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0070347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	66	265	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0070347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	34	328	0				ENST00000310581	NM_198253.2																																																																																	
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866987936		P-0070347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	99	335	0	ENST00000281708.4:c.1436G>C	p.Arg479Pro	p.R479P	ENST00000281708	NM_033632.3	479	cGa/cCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519936		P-0070347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	70	355	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519896		P-0070347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	24	376	2	ENST00000281708.4:c.1514G>A	p.Arg505His	p.R505H	ENST00000281708	NM_033632.3	505	cGc/cAc																																																																															
KDR	3791	MSKCC	GRCh37	4	55956163	55956163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1190064889		P-0070347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	93	291	0	ENST00000263923.4:c.3152G>A	p.Arg1051Gln	p.R1051Q	ENST00000263923	NM_002253.2	1051	cGg/cAg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323001	31323001	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0070347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			773	173	511	0	ENST00000412585.2:c.896-1G>A		p.X299_splice	ENST00000412585	NM_005514.6	299																																																																																
MSI1	4440	MSKCC	GRCh37	12	120796816	120796816	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1311127832		P-0070347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	113	274	0	ENST00000257552.2:c.443G>A	p.Arg148Gln	p.R148Q	ENST00000257552	NM_002442.3	148	cGg/cAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100954	41100954	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1463467204		P-0070347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	97	381	0	ENST00000373198.4:c.1402G>A	p.Glu468Lys	p.E468K	ENST00000373198	NM_133170.3	468	Gag/Aag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445026	89445026	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1398335242		P-0070347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	76	383	0	ENST00000336596.2:c.1346C>A	p.Ser449Tyr	p.S449Y	ENST00000336596	NM_005233.5	449	tCc/tAc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984416	201984416	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1046290932		P-0070347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	158	388	0	ENST00000359651.3:c.1081T>C	p.Trp361Arg	p.W361R	ENST00000359651		361	Tgg/Cgg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729393	41729393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	145	376	0	ENST00000242208.4:c.1136G>A	p.Arg379Gln	p.R379Q	ENST00000242208	NM_002192.2	379	cGg/cAg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797780	32797780	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	116	368	0	ENST00000374899.4:c.1722T>A	p.Asp574Glu	p.D574E	ENST00000374899	NM_018833.2	574	gaT/gaA																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39325134	39325134	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	180	411	0	ENST00000373001.3:c.185C>G	p.Pro62Arg	p.P62R	ENST00000373001	NM_022157.3	62	cCg/cGg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900168	101900168	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	37	289	0	ENST00000374994.4:c.602T>A	p.Ile201Asn	p.I201N	ENST00000374994	NM_004612.2	201	aTt/aAt																																																																															
ALK	238	MSKCC	GRCh37	2	29754815	29754815	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	64	430	0	ENST00000389048.3:c.1120G>T	p.Glu374Ter	p.E374*	ENST00000389048	NM_004304.4	374	Gag/Tag																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082661	16082699	+	frameshift_variant	Frame_Shift_Del	DEL	GGTCGCGGGCACGGCGGGGCTGCGGGAGCCGGCCGCGCC	GGTCGCGGGCACGGCGGGGCTGCGGGAGCCGGCCGCGCC	CGCT			P-0070347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	27	220	1	ENST00000281043.3:c.475_513delinsCGCT	p.Gly159ArgfsTer95	p.G159Rfs*95	ENST00000281043	NM_005378.4	159	GGTCGCGGGCACGGCGGGGCTGCGGGAGCCGGCCGCGCC/CGCT																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0070351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	121	310	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244295	5244295	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1054047470		P-0070351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	73	443	0	ENST00000357368.4:c.1187C>T	p.Ser396Leu	p.S396L	ENST00000357368	NM_002850.3	396	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs775126020		P-0070351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	93	288	0	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0070351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	128	382	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652242	36652242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753529000		P-0070351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	54	336	0	ENST00000244741.5:c.364C>T	p.Arg122Cys	p.R122C	ENST00000244741	NM_000389.4	122	Cgc/Tgc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31493369	31493369	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	45	332	0	ENST00000344624.3:c.1787A>T	p.Asp596Val	p.D596V	ENST00000344624		596	gAt/gTt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69005894	69005894	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	39	291	0	ENST00000288368.4:c.2305C>G	p.Gln769Glu	p.Q769E	ENST00000288368	NM_024870.2	769	Caa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0070361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	71	171	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0070361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	152	361	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0070361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	160	436	1	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
FAT1	2195	MSKCC	GRCh37	4	187540976	187540976	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372329367		P-0070361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			722	42	454	0	ENST00000441802.2:c.6764G>A	p.Arg2255His	p.R2255H	ENST00000441802	NM_005245.3	2255	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249481	153249481	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	189	395	0	ENST00000281708.4:c.1297del	p.Ile433SerfsTer65	p.I433Sfs*65	ENST00000281708	NM_033632.3	433	Atc/tc																																																																															
FH	2271	MSKCC	GRCh37	1	241665750	241665750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	131	280	0	ENST00000366560.3:c.1229C>A	p.Pro410Gln	p.P410Q	ENST00000366560	NM_000143.3	410	cCa/cAa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21636378	21636378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	45	334	0	ENST00000421138.2:c.632G>A	p.Arg211Lys	p.R211K	ENST00000421138		211	aGg/aAg																																																																															
APC	324	MSKCC	GRCh37	5	112173512	112173512	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	116	397	0	ENST00000257430.4:c.2222del	p.Asn741IlefsTer20	p.N741Ifs*20	ENST00000257430	NM_000038.5	741	Aat/at																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554580	63554580	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	409	485	0	ENST00000307078.5:c.159del	p.Asn54ThrfsTer22	p.N54Tfs*22	ENST00000307078	NM_004655.3	53	tcC/tc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0070406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	134	442	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0070406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	116	446	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175907	112175907	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0070406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	59	623	0	ENST00000257430.4:c.4616C>G	p.Ser1539Ter	p.S1539*	ENST00000257430	NM_000038.5	1539	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0070406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			73	239	530	0	ENST00000269305.4:c.782+1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212566719	212566719	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1229970702		P-0070406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	48	562	0	ENST00000342788.4:c.1462C>T	p.Arg488Trp	p.R488W	ENST00000342788	NM_005235.2	488	Cgg/Tgg																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182665391	182665391	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	21	360	0	ENST00000292782.4:c.550T>G	p.Leu184Val	p.L184V	ENST00000292782	NM_020640.2	184	Tta/Gta																																																																															
CTR9	9646	MSKCC	GRCh37	11	10797072	10797072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	27	461	0	ENST00000361367.2:c.2987A>G	p.Lys996Arg	p.K996R	ENST00000361367	NM_014633.3	996	aAg/aGg																																																																															
YES1	7525	MSKCC	GRCh37	18	743391	743391	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	32	452	0	ENST00000314574.4:c.749A>T	p.Lys250Met	p.K250M	ENST00000314574	NM_005433.3	250	aAg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112174142	112174143	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0070406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	96	610	0	ENST00000257430.4:c.2852dup	p.Tyr951Ter	p.Y951*	ENST00000257430	NM_000038.5	951	tat/tAat																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445803	29445803	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	27	563	0	ENST00000544604.2:c.1634A>T	p.Asp545Val	p.D545V	ENST00000544604	NM_001206998.1	545	gAc/gTc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134977931	134977931	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	18	465	0	ENST00000398015.3:c.2924A>C	p.Gln975Pro	p.Q975P	ENST00000398015	NM_004441.4	975	cAg/cCg																																																																															
ALB	213	MSKCC	GRCh37	4	74283914	74283914	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0070406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	55	490	0	ENST00000295897.4:c.1538C>G	p.Ser513Ter	p.S513*	ENST00000295897	NM_000477.5	513	tCa/tGa																																																																															
BTK	695	MSKCC	GRCh37	X	100615081	100615081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			94	17	350	0	ENST00000308731.7:c.834G>A	p.Met278Ile	p.M278I	ENST00000308731	NM_000061.2	278	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0070422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	589	718	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0070422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	186	476	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0070422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	250	321	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45394804	45394804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	178	388	0	ENST00000262160.6:c.545G>T	p.Arg182Leu	p.R182L	ENST00000262160	NM_005901.5	182	cGa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0070455-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			612	11	0	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0070455-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			642	5	0	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0070455-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			651	37	334	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0070455-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			635	11	0	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040940	47040941	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0070455-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	21	201	0	ENST00000329236.7:c.1239_1240del	p.Ser414AspfsTer25	p.S414Dfs*25	ENST00000329236	NM_001204466.1	412	tcTGtg/tctg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070455-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			454	14	232	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31451685	31451685	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070455-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			582	19	0	0	ENST00000344624.3:c.2637G>C	p.Leu879Phe	p.L879F	ENST00000344624		879	ttG/ttC																																																																															
ALK	238	MSKCC	GRCh37	2	29445217	29445217	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070455-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			672	13	0	0	ENST00000389048.3:c.3508A>T	p.Ile1170Phe	p.I1170F	ENST00000389048	NM_004304.4	1170	Atc/Ttc																																																																															
MAX	4149	MSKCC	GRCh37	14	65560487	65560487	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747617797		P-0070455-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			588	11	0	0	ENST00000358664.4:c.110A>G	p.Asp37Gly	p.D37G	ENST00000358664	NM_002382.4	37	gAc/gGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	165	348	3	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																															
SUFU	51684	MSKCC	GRCh37	10	104263974	104263974	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	127	302	1	ENST00000369902.3:c.71del	p.Pro24ArgfsTer72	p.P24Rfs*72	ENST00000369902	NM_016169.3	22	gCc/gc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	226	279	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205478	61205478	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs766035180		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	127	261	0	ENST00000301761.2:c.267del	p.Phe89LeufsTer9	p.F89Lfs*9	ENST00000301761	NM_017841.2	88	cTt/ct																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416834	416834	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773306710		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	215	408	0	ENST00000399788.2:c.3716G>A	p.Arg1239Gln	p.R1239Q	ENST00000399788	NM_001042603.1	1239	cGg/cAg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18699324	18699324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369934938		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	166	279	0	ENST00000266497.5:c.3425G>A	p.Arg1142His	p.R1142H	ENST00000266497		1142	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	143	226	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38616977	38616977	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	75	189	0	ENST00000299084.4:c.395del	p.Asn132MetfsTer20	p.N132Mfs*20	ENST00000299084	NM_152594.2	130	tcA/tc																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	287	373	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	90	343	1	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
USP8	9101	MSKCC	GRCh37	15	50773879	50773880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	215	398	0	ENST00000307179.4:c.1427dup	p.Asn476LysfsTer35	p.N476Kfs*35	ENST00000307179		474	gaa/gAaa																																																																															
CD276	80381	MSKCC	GRCh37	15	73994829	73994829	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751833994		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	59	159	0	ENST00000318443.5:c.313G>A	p.Ala105Thr	p.A105T	ENST00000318443	NM_001024736.1	105	Gca/Aca																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778821	3778821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	179	455	0	ENST00000262367.5:c.6227C>T	p.Ser2076Leu	p.S2076L	ENST00000262367	NM_004380.2	2076	tCg/tTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781324	3781326	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs587783502		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	176	435	0	ENST00000262367.5:c.5039_5041del	p.Ser1680del	p.S1680del	ENST00000262367	NM_004380.2	1680	tCCTtg/ttg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	437	545	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
YES1	7525	MSKCC	GRCh37	18	745962	745963	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	162	289	0	ENST00000314574.4:c.559_560del	p.Ser187Ter	p.S187*	ENST00000314574	NM_005433.3	187	AGt/t																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604661	48604661	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	168	335	0	ENST00000342988.3:c.1483C>A	p.Leu495Ile	p.L495I	ENST00000342988	NM_005359.5	495	Ctt/Att																																																																															
BCL2	596	MSKCC	GRCh37	18	60985580	60985580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	192	438	0	ENST00000333681.4:c.320G>A	p.Arg107His	p.R107H	ENST00000333681		107	cGc/cAc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354212	15354212	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201423321		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	120	328	0	ENST00000263377.2:c.2668G>A	p.Val890Met	p.V890M	ENST00000263377	NM_058243.2	890	Gtg/Atg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210893	36210893	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	200	478	1	ENST00000222270.7:c.649del	p.Arg217GlyfsTer22	p.R217Gfs*22	ENST00000222270	NM_014727.1	215	aCc/ac																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867304	45867304	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1372639983		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	168	434	0	ENST00000391945.4:c.889G>A	p.Ala297Thr	p.A297T	ENST00000391945	NM_000400.3	297	Gcc/Acc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424841	47424841	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	173	399	2	ENST00000404338.3:c.2914del	p.Arg972GlyfsTer55	p.R972Gfs*55	ENST00000404338	NM_004491.4	970	tCc/tc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919960	50919960	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1440946792		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	141	317	0	ENST00000440232.2:c.3047G>A	p.Arg1016His	p.R1016H	ENST00000440232	NM_002691.3	1016	cGc/cAc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661116	227661116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141300291		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	181	494	0	ENST00000305123.5:c.2339C>T	p.Pro780Leu	p.P780L	ENST00000305123	NM_005544.2	780	cCg/cTg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31395677	31395677	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1267164985		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	204	423	1	ENST00000328111.2:c.2530G>A	p.Ala844Thr	p.A844T	ENST00000328111	NM_006892.3	844	Gcc/Acc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21347167	21347167	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747430075		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	175	417	0	ENST00000215739.8:c.1234C>T	p.Arg412Cys	p.R412C	ENST00000215739	NM_006767.3	412	Cgc/Tgc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29439321	29439321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	28	306	0	ENST00000544604.2:c.536C>T	p.Pro179Leu	p.P179L	ENST00000544604	NM_001206998.1	179	cCg/cTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	310	308	8	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
MLH1	4292	MSKCC	GRCh37	3	37089123	37089125	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs1485223012		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	163	289	0	ENST00000231790.2:c.1852_1854del	p.Lys618del	p.K618del	ENST00000231790	NM_000249.3	615	ctGAAg/ctg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	197	329	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185190830	185190830	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs961866050		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	199	429	0	ENST00000265026.3:c.1711G>A	p.Gly571Arg	p.G571R	ENST00000265026	NM_004721.4	571	Gga/Aga																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	116	337	3	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970914	79970915	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1322666029		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	160	222	4	ENST00000265081.6:c.1148dup	p.Asn385GlnfsTer19	p.N385Qfs*19	ENST00000265081	NM_002439.4	380	-/A																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs758740142		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	155	234	0	ENST00000265335.6:c.2801del	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552838	106552838	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367766895		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	235	381	0	ENST00000369096.4:c.803G>A	p.Arg268His	p.R268H	ENST00000369096	NM_001198.3	268	cGt/cAt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	140	314	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874710	151874710	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	204	420	0	ENST00000262189.6:c.7828C>T	p.Arg2610Ter	p.R2610*	ENST00000262189	NM_170606.2	2610	Cga/Tga																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345768	152345769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs759063323		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	160	270	0	ENST00000359321.1:c.801dup	p.His268ThrfsTer11	p.H268Tfs*11	ENST00000359321	NM_005431.1	267	-/A																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	171	495	0	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
FANCC	2176	MSKCC	GRCh37	9	97897777	97897779	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-	rs3831244		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	179	238	0	ENST00000289081.3:c.692_694del	p.Lys231del	p.K231del	ENST00000289081	NM_000136.2	231	aAGAtt/att																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128347904	128347904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377752331		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	150	330	0	ENST00000265960.3:c.601G>A	p.Ala201Thr	p.A201T	ENST00000265960	NM_001006617.1	201	Gcc/Acc																																																																															
NADK	65220	MSKCC	GRCh37	1	1693466	1693466	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776728824		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	167	337	0	ENST00000341426.5:c.188G>A	p.Arg63His	p.R63H	ENST00000341426	NM_023018.4	63	cGc/cAc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9770517	9770517	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs35743662		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	158	270	0	ENST00000377346.4:c.8del	p.Pro3LeufsTer30	p.P3Lfs*30	ENST00000377346	NM_005026.3	2	Ccc/cc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65301107	65301107	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	164	253	0	ENST00000342505.4:c.3341T>C	p.Leu1114Pro	p.L1114P	ENST00000342505	NM_002227.2	1114	cTg/cCg																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47595227	47595227	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	29	331	0	ENST00000395288.2:c.812del	p.Asn271ThrfsTer83	p.N271Tfs*83	ENST00000395288	NM_016506.5	271	aAc/ac																																																																															
ATM	472	MSKCC	GRCh37	11	108138058	108138058	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	34	226	0	ENST00000278616.4:c.2627A>T	p.Gln876Leu	p.Q876L	ENST00000278616	NM_000051.3	876	cAa/cTa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245453	46245453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	185	355	0	ENST00000334344.6:c.3547G>A	p.Ala1183Thr	p.A1183T	ENST00000334344	NM_152641.2	1183	Gca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49418457	49418460	+	frameshift_variant	Frame_Shift_Del	DEL	AATA	AATA	-	rs398123732		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	190	418	0	ENST00000301067.7:c.15953_15956del	p.Leu5318SerfsTer14	p.L5318Sfs*14	ENST00000301067	NM_003482.3	5318	tTATTc/tc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527955	103527955	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	78	329	1	ENST00000355739.4:c.3263T>G	p.Leu1088Trp	p.L1088W	ENST00000355739	NM_000123.3	1088	tTg/tGg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108539	8108539	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764223601		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	81	296	0	ENST00000585124.1:c.856G>A	p.Val286Ile	p.V286I	ENST00000585124	NM_004217.3	286	Gtc/Atc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761460	59761460	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1169710565		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	153	258	0	ENST00000259008.2:c.2947del	p.Ile983LeufsTer2	p.I983Lfs*2	ENST00000259008	NM_032043.2	983	Att/tt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210716	2210716	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	205	490	0	ENST00000398665.3:c.1213A>G	p.Lys405Glu	p.K405E	ENST00000398665	NM_032482.2	405	Aag/Gag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291909	15291909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	197	408	1	ENST00000263388.2:c.2857G>A	p.Gly953Ser	p.G953S	ENST00000263388	NM_000435.2	953	Ggc/Agc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422683	47422683	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776506165		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	184	312	0	ENST00000404338.3:c.751C>T	p.Arg251Trp	p.R251W	ENST00000404338	NM_004491.4	251	Cgg/Tgg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52712517	52712517	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	179	221	0	ENST00000394830.3:c.235A>T	p.Arg79Ter	p.R79*	ENST00000394830	NM_018313.4	79	Aga/Tga																																																																															
RYBP	23429	MSKCC	GRCh37	3	72428229	72428230	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	166	299	0	ENST00000477973.2:c.660dup	p.Asn221LysfsTer43	p.N221Kfs*43	ENST00000477973	NM_012234.5	221	aat/aaAt																																																																															
TET2	54790	MSKCC	GRCh37	4	106155695	106155695	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	210	337	0	ENST00000380013.4:c.596T>C	p.Leu199Ser	p.L199S	ENST00000380013	NM_001127208.2	199	tTa/tCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524731	187524731	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	159	378	0	ENST00000441802.2:c.10949T>C	p.Leu3650Pro	p.L3650P	ENST00000441802	NM_005245.3	3650	cTc/cCc																																																																															
NPM1	4869	MSKCC	GRCh37	5	170814969	170814969	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	42	119	0	ENST00000296930.5:c.17A>G	p.Asp6Gly	p.D6G	ENST00000296930	NM_002520.6	6	gAc/gGc																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020817	26020817	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759927375		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	292	507	0	ENST00000357647.3:c.100G>A	p.Gly34Ser	p.G34S	ENST00000357647	NM_003529.2	34	Ggc/Agc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157256653	157256653	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	165	308	0	ENST00000346085.5:c.1983del	p.Lys661AsnfsTer7	p.K661Nfs*7	ENST00000346085	NM_020732.3	660	ggA/gg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69002912	69002912	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	163	246	0	ENST00000288368.4:c.2212C>A	p.His738Asn	p.H738N	ENST00000288368	NM_024870.2	738	Cac/Aac																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2191317	2191317	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201798443		P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	65	345	0	ENST00000349721.2:c.4646G>A	p.Arg1549Gln	p.R1549Q	ENST00000349721	NM_003070.3	1549	cGg/cAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412711	139412711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	183	444	0	ENST00000277541.6:c.1133G>A	p.Ser378Asn	p.S378N	ENST00000277541	NM_017617.3	378	aGc/aAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931727	39931727	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	185	331	0	ENST00000378444.4:c.2872A>G	p.Lys958Glu	p.K958E	ENST00000378444	NM_001123385.1	958	Aag/Gag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53241036	53241036	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	149	348	0	ENST00000375401.3:c.1175A>G	p.Tyr392Cys	p.Y392C	ENST00000375401	NM_004187.3	392	tAc/tGc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575149	64575149	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	237	437	0	ENST00000337652.1:c.673T>A	p.Trp225Arg	p.W225R	ENST00000337652	NM_130803.2	225	Tgg/Agg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0070874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	15	323	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	105	593	0	ENST00000269305.4:c.645T>A	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584709	48584709	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0070955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	139	499	0	ENST00000342988.3:c.788-1G>T		p.X263_splice	ENST00000342988	NM_005359.5	263																																																																																
APC	324	MSKCC	GRCh37	5	112174739	112174739	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	71	579	0	ENST00000257430.4:c.3448G>T	p.Glu1150Ter	p.E1150*	ENST00000257430	NM_000038.5	1150	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0070963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	500	400	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419897	41419897	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs577588058		P-0070963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			931	53	617	1	ENST00000373198.4:c.424G>A	p.Val142Ile	p.V142I	ENST00000373198	NM_133170.3	142	Gtc/Atc																																																																															
ATM	472	MSKCC	GRCh37	11	108141874	108141874	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587781558		P-0070963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	195	433	0	ENST00000278616.4:c.2921+1G>A		p.X974_splice	ENST00000278616	NM_000051.3	974																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0070963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	308	344	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637555	52637555	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0071022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	76	266	0	ENST00000394830.3:c.2761C>T	p.Arg921Ter	p.R921*	ENST00000394830	NM_018313.4	921	Cga/Tga																																																																															
ETV6	2120	MSKCC	GRCh37	12	11905391	11905391	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781494988		P-0071022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	275	308	0	ENST00000396373.4:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000396373	NM_001987.4	14	cGa/cAa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120016	70120016	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1339655148		P-0071022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	199	339	0	ENST00000245479.2:c.1018C>T	p.Gln340Ter	p.Q340*	ENST00000245479	NM_000346.3	340	Cag/Tag																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006077	22006077	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377723228		P-0071022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	318	401	0	ENST00000276925.6:c.326G>A	p.Arg109His	p.R109H	ENST00000276925	NM_004936.3	109	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0071022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	144	218	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175158	112175159	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AATCAGACGACACAGG			P-0071022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	165	310	0	ENST00000257430.4:c.3870_3885dup	p.Ala1296SerfsTer10	p.A1296Sfs*10	ENST00000257430	NM_000038.5	1289	-/AATCAGACGACACAGG																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106276	27106277	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0071031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	113	295	0	ENST00000324856.7:c.5888dup	p.Asp1963GlufsTer2	p.D1963Efs*2	ENST00000324856	NM_006015.4	1963	gat/gAat																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0071088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	50	342	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0071088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	122	394	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
SPEN	23013	MSKCC	GRCh37	1	16263712	16263712	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	61	559	0	ENST00000375759.3:c.10081C>A	p.Gln3361Lys	p.Q3361K	ENST00000375759	NM_015001.2	3361	Cag/Aag																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29440819	29440873	+	frameshift_variant	Frame_Shift_Del	DEL	GTCTCCTTGGTCTGCCTCATCCTCCTTGTCAAAATCAAGCTGAAGCAGCGACGCA	GTCTCCTTGGTCTGCCTCATCCTCCTTGTCAAAATCAAGCTGAAGCAGCGACGCA	-			P-0071088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	115	390	0	ENST00000544604.2:c.688_742del	p.Ser230ArgfsTer4	p.S230Rfs*4	ENST00000544604	NM_001206998.1	229	GTCTCCTTGGTCTGCCTCATCCTCCTTGTCAAAATCAAGCTGAAGCAGCGACGCAgt/gt																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422296	47422296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	102	401	0	ENST00000404338.3:c.364G>A	p.Ala122Thr	p.A122T	ENST00000404338	NM_004491.4	122	Gcg/Acg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350335	15350335	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0071088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	66	335	0	ENST00000263377.2:c.3446-2A>C		p.X1149_splice	ENST00000263377	NM_058243.2	1149																																																																																
PIK3CD	5293	MSKCC	GRCh37	1	9777024	9777024	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	100	454	0	ENST00000377346.4:c.788G>T	p.Cys263Phe	p.C263F	ENST00000377346	NM_005026.3	263	tGc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0071120-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	89	139	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112177787	112177787	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071120-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	143	195	0	ENST00000257430.4:c.6496C>T	p.Arg2166Ter	p.R2166*	ENST00000257430	NM_000038.5	2166	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0071120-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	121	177	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678541	88678541	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145157285		P-0071120-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	102	133	0	ENST00000360948.2:c.995C>T	p.Thr332Met	p.T332M	ENST00000360948	NM_001012338.2	332	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0071120-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	100	115	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
MET	4233	MSKCC	GRCh37	7	116412017	116412017	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071120-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	172	178	0	ENST00000397752.3:c.3002T>C	p.Val1001Ala	p.V1001A	ENST00000397752	NM_000245.2	1001	gTa/gCa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023645	31023646	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0071120-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	490	139	0	ENST00000375687.4:c.3132dup	p.Lys1045GlnfsTer5	p.K1045Qfs*5	ENST00000375687	NM_015338.5	1044	tcc/tCcc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880984	37880985	+	inframe_insertion	In_Frame_Ins	INS	-	-	TACGTGATGGCT			P-0071133-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			691	1711	625	0	ENST00000269571.5:c.2314_2325dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/TACGTGATGGCT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180041121	180041121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770869636		P-0071133-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	138	653	0	ENST00000261937.6:c.3278C>T	p.Thr1093Met	p.T1093M	ENST00000261937	NM_182925.4	1093	aCg/aTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55979602	55979602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071133-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			314	218	252	0	ENST00000263923.4:c.845G>A	p.Gly282Glu	p.G282E	ENST00000263923	NM_002253.2	282	gGg/gAg																																																																															
POT1	25913	MSKCC	GRCh37	7	124503667	124503667	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs797045168		P-0071133-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			270	353	278	0	ENST00000357628.3:c.283G>T	p.Gly95Cys	p.G95C	ENST00000357628	NM_015450.2	95	Ggt/Tgt																																																																															
POT1	25913	MSKCC	GRCh37	7	124532319	124532319	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0071133-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			384	139	151	0	ENST00000357628.3:c.124+1G>A		p.X42_splice	ENST00000357628	NM_015450.2	42																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139400204	139400204	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764931034		P-0071133-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	160	596	0	ENST00000277541.6:c.4144G>A	p.Glu1382Lys	p.E1382K	ENST00000277541	NM_017617.3	1382	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0071162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	83	367	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11184586	11184586	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	105	284	0	ENST00000361445.4:c.6631A>G	p.Asn2211Asp	p.N2211D	ENST00000361445	NM_004958.3	2211	Aat/Gat																																																																															
PARP1	142	MSKCC	GRCh37	1	226570763	226570763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	94	355	1	ENST00000366794.5:c.1133C>T	p.Ala378Val	p.A378V	ENST00000366794	NM_001618.3	378	gCt/gTt																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200671	67200671	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1474951609		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	35	497	0	ENST00000312629.5:c.782A>G	p.Asp261Gly	p.D261G	ENST00000312629	NM_003952.2	261	gAc/gGc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948208	71948208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	30	394	0	ENST00000298229.2:c.2920G>C	p.Ala974Pro	p.A974P	ENST00000298229	NM_001567.3	974	Gcc/Ccc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	42	519	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240069	41240069	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1482440466		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	42	148	0	ENST00000379561.5:c.281T>C	p.Val94Ala	p.V94A	ENST00000379561	NM_002015.3	94	gTg/gCg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240072	41240072	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs989533582		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	45	152	0	ENST00000379561.5:c.278C>T	p.Ala93Val	p.A93V	ENST00000379561	NM_002015.3	93	gCg/gTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524611	103524612	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs752661599		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	151	281	3	ENST00000355739.4:c.2751dup	p.Leu918IlefsTer12	p.L918Ifs*12	ENST00000355739	NM_000123.3	914	-/A																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36989288	36989288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	115	347	0	ENST00000354822.5:c.47C>T	p.Ala16Val	p.A16V	ENST00000354822	NM_001079668.2	16	gCg/gTg																																																																															
USP8	9101	MSKCC	GRCh37	15	50773879	50773880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	35	389	0	ENST00000307179.4:c.1427dup	p.Asn476LysfsTer35	p.N476Kfs*35	ENST00000307179		474	gaa/gAaa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226167	2226167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	145	456	1	ENST00000326181.6:c.1864G>A	p.Asp622Asn	p.D622N	ENST00000326181	NM_032271.2	622	Gac/Aac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	104	415	3	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348864	11348864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	48	353	0	ENST00000332029.2:c.472C>G	p.Pro158Ala	p.P158A	ENST00000332029	NM_003745.1	158	Ccg/Gcg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50784049	50784049	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747924691		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	173	319	0	ENST00000398568.2:c.440G>A	p.Arg147His	p.R147H	ENST00000398568	NM_001042412.1	147	cGc/cAc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56852600	56852600	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	50	310	0	ENST00000308159.5:c.518del	p.Pro173LeufsTer25	p.P173Lfs*25	ENST00000308159	NM_014669.4	172	Ccc/cc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7989402	7989402	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150641093		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	113	448	0	ENST00000319144.4:c.284G>A	p.Arg95His	p.R95H	ENST00000319144	NM_001139.2	95	cGt/cAt																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	108	410	7	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	350	565	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761303	59761303	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367816363		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	32	324	0	ENST00000259008.2:c.3104G>A	p.Arg1035His	p.R1035H	ENST00000259008	NM_032043.2	1035	cGt/cAt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	64	405	0	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955165	17955165	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752820429		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	150	350	0	ENST00000458235.1:c.62C>T	p.Thr21Met	p.T21M	ENST00000458235	NM_000215.3	21	aCg/aTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	40	502	6	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																															
AKT2	208	MSKCC	GRCh37	19	40743974	40743974	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760399082		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	168	420	0	ENST00000392038.2:c.733C>T	p.Arg245Cys	p.R245C	ENST00000392038	NM_001626.4	245	Cgt/Tgt																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45856059	45856059	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376556895		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	122	404	1	ENST00000391945.4:c.1847G>A	p.Arg616Gln	p.R616Q	ENST00000391945	NM_000400.3	616	cGg/cAg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	112	468	4	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
MSH6	2956	MSKCC	GRCh37	2	48032065	48032065	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	36	260	0	ENST00000234420.5:c.3455T>C	p.Val1152Ala	p.V1152A	ENST00000234420	NM_000179.2	1152	gTa/gCa																																																																															
PMS1	5378	MSKCC	GRCh37	2	190718999	190718999	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147084726		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	99	276	0	ENST00000441310.2:c.1001C>T	p.Thr334Met	p.T334M	ENST00000441310	NM_000534.4	334	aCg/aTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202149819	202149819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	36	496	0	ENST00000358485.4:c.1264del	p.Asp422IlefsTer19	p.D422Ifs*19	ENST00000358485	NM_001080125.1	420	caG/ca																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113151	209113151	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780642190		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	30	383	0	ENST00000345146.2:c.356G>A	p.Arg119Gln	p.R119Q	ENST00000345146	NM_005896.2	119	cGg/cAg																																																																															
BARD1	580	MSKCC	GRCh37	2	215645975	215645975	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	34	404	1	ENST00000260947.4:c.623del	p.Lys208ArgfsTer4	p.K208Rfs*4	ENST00000260947	NM_000465.2	208	aAg/ag																																																																															
INHA	3623	MSKCC	GRCh37	2	220437288	220437288	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1476801115		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	43	405	0	ENST00000243786.2:c.197del	p.Gly66AlafsTer61	p.G66Afs*61	ENST00000243786	NM_002191.3	64	ctG/ct																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	137	480	5	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	115	430	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164218	47164218	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	138	350	0	ENST00000409792.3:c.1908del	p.Phe636LeufsTer6	p.F636Lfs*6	ENST00000409792	NM_014159.6	636	ttT/tt																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169985715	169985715	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs567380681		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	124	221	0	ENST00000295797.4:c.377G>A	p.Arg126His	p.R126H	ENST00000295797	NM_002740.5	126	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	124	251	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936096	178936096	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519940		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	31	173	0	ENST00000263967.3:c.1638G>T	p.Gln546His	p.Q546H	ENST00000263967	NM_006218.2	546	caG/caT																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748152	41748152	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587778606		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	99	251	0	ENST00000226382.2:c.617C>A	p.Pro206His	p.P206H	ENST00000226382	NM_003924.3	206	cCc/cAc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	152	539	2	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	119	239	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845190	151845190	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764910946		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	140	374	0	ENST00000262189.6:c.13822C>T	p.Arg4608Cys	p.R4608C	ENST00000262189	NM_170606.2	4608	Cgc/Tgc																																																																															
ARAF	369	MSKCC	GRCh37	X	47428164	47428164	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145056294		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	114	403	0	ENST00000377045.4:c.1124G>A	p.Arg375Gln	p.R375Q	ENST00000377045	NM_001654.4	375	cGg/cAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448293	56448293	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	40	355	0	ENST00000407977.2:c.354del	p.Cys119AlafsTer39	p.C119Afs*39	ENST00000407977		118	ccC/cc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165627	118165627	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1230332453		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	156	455	0	ENST00000369448.3:c.137T>C	p.Ile46Thr	p.I46T	ENST00000369448	NM_017709.3	46	aTa/aCa																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231474179	231474179	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	25	364	0	ENST00000295050.7:c.50T>C	p.Leu17Ser	p.L17S	ENST00000295050	NM_032018.5	17	tTg/tCg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998397	100998397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	53	378	0	ENST00000325455.5:c.1405C>T	p.Pro469Ser	p.P469S	ENST00000325455	NM_001202474.3	469	Ccg/Tcg																																																																															
SETD8	387893	MSKCC	GRCh37	12	123875243	123875243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	30	63	0	ENST00000330479.4:c.199C>T	p.Arg67Cys	p.R67C	ENST00000330479	NM_020382.3	67	Cgt/Tgt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972322	32972322	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	69	277	0	ENST00000380152.3:c.9672A>G	p.Ile3224Met	p.I3224M	ENST00000380152		3224	atA/atG																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570180	95570180	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150514959		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	136	384	0	ENST00000343455.3:c.3553G>A	p.Ala1185Thr	p.A1185T	ENST00000343455	NM_177438.2	1185	Gcc/Acc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354408	354408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	142	308	0	ENST00000262320.3:c.1150G>A	p.Glu384Lys	p.E384K	ENST00000262320	NM_003502.3	384	Gag/Aag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134481	2134481	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	40	584	0	ENST00000219476.3:c.4258T>C	p.Ser1420Pro	p.S1420P	ENST00000219476	NM_000548.3	1420	Tca/Cca																																																																															
PALB2	79728	MSKCC	GRCh37	16	23634377	23634377	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	32	245	0	ENST00000261584.4:c.2909T>C	p.Leu970Pro	p.L970P	ENST00000261584	NM_024675.3	970	cTt/cCt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16055273	16055273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	93	192	0	ENST00000268712.3:c.829G>A	p.Glu277Lys	p.E277K	ENST00000268712	NM_006311.3	277	Gag/Aag																																																																															
NF1	4763	MSKCC	GRCh37	17	29562762	29562762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	32	316	0	ENST00000358273.4:c.3842C>T	p.Ala1281Val	p.A1281V	ENST00000358273	NM_001042492.2	1281	gCc/gTc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40458410	40458410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	23	77	0	ENST00000345506.4:c.1625G>A	p.Ser542Asn	p.S542N	ENST00000345506	NM_003152.3	542	aGc/aAc																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66526107	66526107	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	190	362	0	ENST00000358598.2:c.938T>C	p.Val313Ala	p.V313A	ENST00000358598	NM_212471.2	313	gTt/gCt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5218542	5218542	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	113	347	0	ENST00000357368.4:c.3937A>G	p.Lys1313Glu	p.K1313E	ENST00000357368	NM_002850.3	1313	Aaa/Gaa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141540	11141540	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	37	426	0	ENST00000344626.4:c.3517A>G	p.Ile1173Val	p.I1173V	ENST00000344626	NM_003072.3	1173	Att/Gtt																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424259	47424260	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	177	450	0	ENST00000404338.3:c.2330dup	p.Leu777PhefsTer3	p.L777Ffs*3	ENST00000404338	NM_004491.4	776	gat/gaTt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403172	213403172	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	82	232	0	ENST00000342788.4:c.82+1G>A		p.X28_splice	ENST00000342788	NM_005235.2	28																																																																																
BARD1	580	MSKCC	GRCh37	2	215632321	215632321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	105	279	0	ENST00000260947.4:c.1453G>A	p.Ala485Thr	p.A485T	ENST00000260947	NM_000465.2	485	Gca/Aca																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31025053	31025053	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	183	409	0	ENST00000375687.4:c.4538T>C	p.Met1513Thr	p.M1513T	ENST00000375687	NM_015338.5	1513	aTg/aCg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62290759	62290759	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	G			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	79	192	0	ENST00000482936.1:c.4C>G	p.Pro2Ala	p.P2A	ENST00000482936		2	Ccc/Gcc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62317186	62317186	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs1472737383		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	38	423	0	ENST00000482936.1:c.1309C>T	p.Arg437Trp	p.R437W	ENST00000482936		437	Cgg/Tgg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713829	30713829	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	155	523	0	ENST00000359013.4:c.1229del	p.Ile410ThrfsTer3	p.I410Tfs*3	ENST00000359013	NM_001024847.2	410	aTc/ac																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911618	134911618	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	114	388	0	ENST00000398015.3:c.2083A>G	p.Ile695Val	p.I695V	ENST00000398015	NM_004441.4	695	Atc/Gtc																																																																															
REST	5978	MSKCC	GRCh37	4	57796794	57796795	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	48	498	0	ENST00000309042.7:c.1774dup	p.Ser592LysfsTer3	p.S592Kfs*3	ENST00000309042	NM_005612.4	590	-/A																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629649	187629650	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	195	443	0	ENST00000441802.2:c.1332dup	p.Ala445SerfsTer14	p.A445Sfs*14	ENST00000441802	NM_005245.3	444	-/A																																																																															
MSH3	4437	MSKCC	GRCh37	5	79950664	79950664	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	76	320	0	ENST00000265081.6:c.118T>A	p.Ser40Thr	p.S40T	ENST00000265081	NM_002439.4	40	Tcc/Acc																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790786	89790786	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	135	446	0	ENST00000336032.3:c.173C>A	p.Pro58His	p.P58H	ENST00000336032	NM_006813.2	58	cCt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268014	55268014	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	60	414	0	ENST00000275493.2:c.2854A>G	p.Met952Val	p.M952V	ENST00000275493	NM_005228.3	952	Atg/Gtg																																																																															
HGF	3082	MSKCC	GRCh37	7	81350083	81350083	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	103	218	0	ENST00000222390.5:c.1249A>T	p.Lys417Ter	p.K417*	ENST00000222390	NM_000601.4	417	Aag/Tag																																																																															
SMO	6608	MSKCC	GRCh37	7	128828999	128828999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs562868539		P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	12	252	2	ENST00000249373.3:c.7G>A	p.Ala3Thr	p.A3T	ENST00000249373	NM_005631.4	3	Gct/Act																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742867	145742868	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	127	392	0	ENST00000428558.2:c.143dup	p.Lys49GlufsTer88	p.K49Efs*88	ENST00000428558	NM_004260.3	48	ctg/ctTg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87636197	87636197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	22	361	0	ENST00000277120.3:c.2362C>A	p.Leu788Met	p.L788M	ENST00000277120		788	Ctg/Atg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98215868	98215868	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	34	267	0	ENST00000331920.6:c.3341G>T	p.Arg1114Met	p.R1114M	ENST00000331920	NM_000264.3	1114	aGg/aTg																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652545	48652545	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	74	363	0	ENST00000376670.3:c.1216A>G	p.Thr406Ala	p.T406A	ENST00000376670	NM_002049.3	406	Act/Gct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952030	178952030	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071186-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	34	348	0	ENST00000263967.3:c.3085G>C	p.Asp1029His	p.D1029H	ENST00000263967	NM_006218.2	1029	Gat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071186-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	40	272	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EED	8726	MSKCC	GRCh37	11	85955624	85956272	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	TGTTTTTGCATTTCTATCTTCAAGGAAGAATTAGGTTATGAATAGTTCCGTGAATAGTCAGGAAGCGCTGTCCTCCAAGTTCAAGATTAAGGAAACGTGGCATGCACAGCTAAAGCAAGAGGTGACGTCTTGTATCTTCCCCCGTTTCCTGGGACATTGGTGGTGTAGCCCATTCCACAGACTTTCGCTCCCTAGCAGCGGGTCGGAGATCGAAGGAACGGGCCAATTGCGGCTGAAACGTCTTTGGAAGGAGGAAGGGGGTGAGGGAGCATCCCTTTGAGTTTCGCCTCTTCTCGAGGCGGTGGTGGGAAGGGAGACATACTTAATACTGCCCTCTTAATCCAACGGACCTTACATCGTGTAGACTGCCGGGAGGGCGGCGGGAAAAGGGCAAGACGGGAGTTGGGGAAGGGAAGGAGCCAGGAAGCCGCGCGGGAGGGCGCGCGCGCGCGCCCCTTTTTCAGCAGTGTGGCGGGGTCGCACGCACGCCCGCCTCGGCGGCTGGGCGCGATTTGCGACAGTGGGGGGGGCGGTGGAGGTGGCGGCGGCAGCGGCAACTTTGCGGCAAGCTCGGGCCGGGCTTGCTTGACGGCGGTGTGGCGGAGGCCCCGCCCCAGGCGGCAGGAACCTGGAGGGAGGCGGAGGAATA	TGTTTTTGCATTTCTATCTTCAAGGAAGAATTAGGTTATGAATAGTTCCGTGAATAGTCAGGAAGCGCTGTCCTCCAAGTTCAAGATTAAGGAAACGTGGCATGCACAGCTAAAGCAAGAGGTGACGTCTTGTATCTTCCCCCGTTTCCTGGGACATTGGTGGTGTAGCCCATTCCACAGACTTTCGCTCCCTAGCAGCGGGTCGGAGATCGAAGGAACGGGCCAATTGCGGCTGAAACGTCTTTGGAAGGAGGAAGGGGGTGAGGGAGCATCCCTTTGAGTTTCGCCTCTTCTCGAGGCGGTGGTGGGAAGGGAGACATACTTAATACTGCCCTCTTAATCCAACGGACCTTACATCGTGTAGACTGCCGGGAGGGCGGCGGGAAAAGGGCAAGACGGGAGTTGGGGAAGGGAAGGAGCCAGGAAGCCGCGCGGGAGGGCGCGCGCGCGCGCCCCTTTTTCAGCAGTGTGGCGGGGTCGCACGCACGCCCGCCTCGGCGGCTGGGCGCGATTTGCGACAGTGGGGGGGGCGGTGGAGGTGGCGGCGGCAGCGGCAACTTTGCGGCAAGCTCGGGCCGGGCTTGCTTGACGGCGGTGTGGCGGAGGCCCCGCCCCAGGCGGCAGGAACCTGGAGGGAGGCGGAGGAATA	-			P-0071186-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			0	20	0	0	ENST00000263360.6:c.-645_4del		p.*215*	ENST00000263360	NM_003797.3																																																																																	
KRAS	3845	MSKCC	GRCh37	12	25380275	25380276	+	missense_variant	Missense_Mutation	DNP	TT	TT	GA			P-0071186-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	33	378	0	ENST00000256078.4:c.182_183delinsTC	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAA/cTC																																																																															
FANCA	2175	MSKCC	GRCh37	16	89838103	89838103	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071186-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	39	431	0	ENST00000389301.3:c.2134G>C	p.Glu712Gln	p.E712Q	ENST00000389301	NM_000135.2	712	Gag/Cag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212399	5212399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071186-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	61	440	0	ENST00000357368.4:c.4718G>A	p.Arg1573Lys	p.R1573K	ENST00000357368	NM_002850.3	1573	aGa/aAa																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	104	345	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257365	19257366	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0071190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	230	433	0	ENST00000162023.5:c.767dup	p.Glu257ArgfsTer28	p.E257Rfs*28	ENST00000162023		256	cca/ccCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0071190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	251	440	0	ENST00000269305.4:c.497C>A	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tAa																																																																															
INSR	3643	MSKCC	GRCh37	19	7125350	7125350	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762687424		P-0071190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	132	463	0	ENST00000302850.5:c.3202C>T	p.Arg1068Trp	p.R1068W	ENST00000302850	NM_000208.2	1068	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112173801	112173801	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs79512956		P-0071190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	205	391	0	ENST00000257430.4:c.2510C>G	p.Ser837Ter	p.S837*	ENST00000257430	NM_000038.5	837	tCa/tGa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348022	89348022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147690079		P-0071190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			776	50	459	0	ENST00000301030.4:c.4928C>T	p.Pro1643Leu	p.P1643L	ENST00000301030	NM_001256183.1	1643	cCg/cTg																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881489	111881489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	220	343	0	ENST00000393256.3:c.167C>T	p.Pro56Leu	p.P56L	ENST00000393256	NM_006538.4	56	cCc/cTc																																																																															
ATR	545	MSKCC	GRCh37	3	142218558	142218558	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs1319044216		P-0071190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	82	217	0	ENST00000350721.4:c.5291C>A	p.Ser1764Tyr	p.S1764Y	ENST00000350721	NM_001184.3	1764	tCc/tAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692874	89692874	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786204930		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	32	171	0	ENST00000371953.3:c.358G>A	p.Ala120Thr	p.A120T	ENST00000371953	NM_000314.4	120	Gca/Aca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717712	89717712	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782350		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	36	291	0	ENST00000371953.3:c.737C>T	p.Pro246Leu	p.P246L	ENST00000371953	NM_000314.4	246	cCg/cTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	33	240	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	68	361	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742951	17742951	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1332082680		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	40	389	0	ENST00000250003.3:c.859G>A	p.Ala287Thr	p.A287T	ENST00000250003	NM_002478.4	287	Gcc/Acc																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594883	47594883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780075355		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	77	489	2	ENST00000395288.2:c.1156del	p.Glu386ArgfsTer27	p.E386Rfs*27	ENST00000395288	NM_016506.5	386	Gag/ag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948484	71948484	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	80	507	0	ENST00000298229.2:c.3201del	p.Ser1068AlafsTer63	p.S1068Afs*63	ENST00000298229	NM_001567.3	1066	Ccc/cc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	94	493	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	96	484	4	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870993	12870994	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	116	473	0	ENST00000228872.4:c.221dup	p.Tyr74Ter	p.Y74*	ENST00000228872	NM_004064.3	74	tac/tAac																																																																															
RB1	5925	MSKCC	GRCh37	13	48878069	48878069	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	58	410	0	ENST00000267163.4:c.25del	p.Thr9ArgfsTer56	p.T9Rfs*56	ENST00000267163	NM_000321.2	7	cgA/cg																																																																															
RB1	5925	MSKCC	GRCh37	13	49033955	49033955	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	61	380	0	ENST00000267163.4:c.2092A>G	p.Arg698Gly	p.R698G	ENST00000267163	NM_000321.2	698	Agg/Ggg																																																																															
MGA	23269	MSKCC	GRCh37	15	42028600	42028600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	64	455	0	ENST00000219905.7:c.4138C>T	p.Arg1380Ter	p.R1380*	ENST00000219905	NM_001164273.1	1380	Cga/Tga																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43733757	43733757	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	51	276	0	ENST00000382044.4:c.3065del	p.Asn1022MetfsTer20	p.N1022Mfs*20	ENST00000382044	NM_001141980.1	1022	aAt/at																																																																															
B2M	567	MSKCC	GRCh37	15	45003779	45003779	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	83	393	0	ENST00000558401.1:c.35T>C	p.Leu12Pro	p.L12P	ENST00000558401	NM_004048.2	12	cTa/cCa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2112580	2112580	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45486591		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	84	423	0	ENST00000219476.3:c.1340C>T	p.Ala447Val	p.A447V	ENST00000219476	NM_000548.3	447	gCg/gTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341524	89341524	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769512532		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	56	324	0	ENST00000301030.4:c.7546C>T	p.Arg2516Cys	p.R2516C	ENST00000301030	NM_001256183.1	2516	Cgt/Tgt																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108652	8108652	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777705809		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	86	442	0	ENST00000585124.1:c.743G>A	p.Arg248His	p.R248H	ENST00000585124	NM_004217.3	248	cGc/cAc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40451786	40451786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	59	428	0	ENST00000345506.4:c.568G>A	p.Ala190Thr	p.A190T	ENST00000345506	NM_003152.3	190	Gcc/Acc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	181	515	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	68	451	1	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532555	63532555	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730881401		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	104	514	1	ENST00000307078.5:c.2024G>A	p.Arg675His	p.R675H	ENST00000307078	NM_004655.3	675	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575066	48575066	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060500735		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	48	340	0	ENST00000342988.3:c.260G>A	p.Arg87Gln	p.R87Q	ENST00000342988	NM_005359.5	87	cGg/cAg																																																																															
GNA11	2767	MSKCC	GRCh37	19	3119008	3119008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	93	421	0	ENST00000078429.4:c.692C>T	p.Ala231Val	p.A231V	ENST00000078429	NM_002067.2	231	gCc/gTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303305	15303305	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762164861		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	78	443	0	ENST00000263388.2:c.223C>T	p.Arg75Trp	p.R75W	ENST00000263388	NM_000435.2	75	Cgg/Tgg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367949	15367949	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs200046003		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	58	357	0	ENST00000263377.2:c.1377C>G	p.Asp459Glu	p.D459E	ENST00000263377	NM_058243.2	459	gaC/gaG																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	59	455	1	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025976	48025976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	201	530	0	ENST00000234420.5:c.854G>A	p.Ser285Asn	p.S285N	ENST00000234420	NM_000179.2	285	aGt/aAt																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719640	190719640	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	21	274	0	ENST00000441310.2:c.1647del	p.Lys549AsnfsTer4	p.K549Nfs*4	ENST00000441310	NM_000534.4	548	Aaa/aa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	89	438	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713385	40713385	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs180871064		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	80	553	0	ENST00000373198.4:c.4130G>A	p.Arg1377Gln	p.R1377Q	ENST00000373198	NM_133170.3	1377	cGa/cAa																																																																															
ERG	2078	MSKCC	GRCh37	21	39755518	39755518	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760527652		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	65	548	0	ENST00000288319.7:c.1247C>T	p.Pro416Leu	p.P416L	ENST00000288319	NM_182918.3	416	cCg/cTg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279846	29279847	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCC	rs958418836		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	25	122	0	ENST00000544604.2:c.107_109dup	p.Pro36dup	p.P36dup	ENST00000544604	NM_001206998.1	36	ctg/ctGCCg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498447	89498447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	59	387	0	ENST00000336596.2:c.2419G>A	p.Val807Ile	p.V807I	ENST00000336596	NM_005233.5	807	Gta/Ata																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413710	138413710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	89	335	2	ENST00000289153.2:c.1810del	p.Arg604GlyfsTer4	p.R604Gfs*4	ENST00000289153	NM_006219.2	604	Cgg/gg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	84	525	2	ENST00000382895.3:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382895	NM_133330.2	1341	Ccc/cc																																																																															
TERT	7015	MSKCC	GRCh37	5	1293562	1293562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	33	386	0	ENST00000310581.5:c.1439C>T	p.Ser480Phe	p.S480F	ENST00000310581	NM_198253.2	480	tCc/tTc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522560	176522560	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201831200		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	97	454	0	ENST00000292408.4:c.1657G>A	p.Ala553Thr	p.A553T	ENST00000292408	NM_213647.1	553	Gcc/Acc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048196	180048196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	78	462	0	ENST00000261937.6:c.2077G>A	p.Asp693Asn	p.D693N	ENST00000261937	NM_182925.4	693	Gac/Aac																																																																															
FYN	2534	MSKCC	GRCh37	6	112024168	112024168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	51	367	0	ENST00000368678.4:c.617G>A	p.Arg206His	p.R206H	ENST00000368678		206	cGc/cAc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	108	462	2	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	38	338	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090523	5090523	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370705658		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	41	290	1	ENST00000381652.3:c.2839C>T	p.Arg947Trp	p.R947W	ENST00000381652	NM_004972.3	947	Cgg/Tgg																																																																															
TEK	7010	MSKCC	GRCh37	9	27213538	27213538	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	43	322	0	ENST00000380036.4:c.2938del	p.Ile980Ter	p.I980*	ENST00000380036	NM_000459.3	978	gcA/gc																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020768	37020769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs767894241		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	69	397	0	ENST00000358127.4:c.76dup	p.Val26GlyfsTer49	p.V26Gfs*49	ENST00000358127	NM_001280556.1	26	gtt/gGtt																																																																															
FANCC	2176	MSKCC	GRCh37	9	97887430	97887430	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1800366		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	71	367	0	ENST00000289081.3:c.934A>G	p.Ile312Val	p.I312V	ENST00000289081	NM_000136.2	312	Ata/Gta																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933400	39933400	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	72	478	0	ENST00000378444.4:c.1199del	p.Gly400AlafsTer42	p.G400Afs*42	ENST00000378444	NM_001123385.1	400	gGc/gc																																																																															
AR	367	MSKCC	GRCh37	X	66766187	66766187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	50	445	0	ENST00000374690.3:c.1199C>T	p.Ala400Val	p.A400V	ENST00000374690	NM_000044.3	400	gCg/gTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76888785	76888785	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	33	388	0	ENST00000373344.5:c.5044G>T	p.Gly1682Cys	p.G1682C	ENST00000373344	NM_000489.3	1682	Ggc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106816	27106816	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1353450888		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	173	497	0	ENST00000324856.7:c.6427C>T	p.Arg2143Cys	p.R2143C	ENST00000324856	NM_006015.4	2143	Cgc/Tgc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63760040	63760040	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	98	407	0	ENST00000279873.7:c.695del	p.Pro232ArgfsTer4	p.P232Rfs*4	ENST00000279873	NM_032199.2	231	caC/ca																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63845474	63845474	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	53	387	0	ENST00000279873.7:c.1213T>C	p.Tyr405His	p.Y405H	ENST00000279873	NM_032199.2	405	Tat/Cat																																																																															
CTR9	9646	MSKCC	GRCh37	11	10795631	10795633	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs770830403		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	74	471	0	ENST00000361367.2:c.2807_2809del	p.Lys936del	p.K936del	ENST00000361367	NM_014633.3	934	AAG/-																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948698	71948698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	63	451	0	ENST00000298229.2:c.3410C>A	p.Pro1137His	p.P1137H	ENST00000298229	NM_001567.3	1137	cCt/cAt																																																																															
ATM	472	MSKCC	GRCh37	11	108196950	108196950	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	53	338	0	ENST00000278616.4:c.6973G>T	p.Ala2325Ser	p.A2325S	ENST00000278616	NM_000051.3	2325	Gcg/Tcg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233163	46233163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142830612		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	77	384	0	ENST00000334344.6:c.1382C>T	p.Ala461Val	p.A461V	ENST00000334344	NM_152641.2	461	gCa/gTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437163	49437163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	69	356	0	ENST00000301067.7:c.5516G>A	p.Gly1839Asp	p.G1839D	ENST00000301067	NM_003482.3	1839	gGc/gAc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864124	57864125	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	109	489	0	ENST00000228682.2:c.1607dup	p.Val537SerfsTer4	p.V537Sfs*4	ENST00000228682	NM_005269.2	534	ggc/ggCc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29005395	29005395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	47	354	0	ENST00000282397.4:c.866C>T	p.Ala289Val	p.A289V	ENST00000282397	NM_002019.4	289	gCc/gTc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514810	103514810	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	75	439	0	ENST00000355739.4:c.1314del	p.Gly439GlufsTer13	p.G439Efs*13	ENST00000355739	NM_000123.3	437	ggA/gg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066858	30066858	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1404371888		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	78	358	0	ENST00000331968.5:c.2273A>C	p.Lys758Thr	p.K758T	ENST00000331968	NM_002742.2	758	aAg/aCg																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023346	33023346	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	125	459	0	ENST00000300177.4:c.455T>C	p.Met152Thr	p.M152T	ENST00000300177	NM_001191322.1	152	aTg/aCg																																																																															
CD276	80381	MSKCC	GRCh37	15	74005273	74005273	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	40	283	0	ENST00000318443.5:c.1583-2A>G		p.X528_splice	ENST00000318443	NM_001024736.1	528																																																																																
TSC2	7249	MSKCC	GRCh37	16	2124363	2124363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	75	414	0	ENST00000219476.3:c.2518G>A	p.Ala840Thr	p.A840T	ENST00000219476	NM_000548.3	840	Gcc/Acc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222313	2222314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	66	452	0	ENST00000326181.6:c.603dup	p.Ile202HisfsTer3	p.I202Hfs*3	ENST00000326181	NM_032271.2	199	-/C																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828311	72828311	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	73	436	0	ENST00000268489.5:c.8270del	p.Gly2757AspfsTer4	p.G2757Dfs*4	ENST00000268489	NM_006885.3	2757	gGa/ga																																																																															
NF1	4763	MSKCC	GRCh37	17	29677212	29677212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	54	304	0	ENST00000358273.4:c.7333G>A	p.Val2445Met	p.V2445M	ENST00000358273	NM_001042492.2	2445	Gtg/Atg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37673726	37673726	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	89	435	0	ENST00000447079.4:c.2880G>A	p.Trp960Ter	p.W960*	ENST00000447079	NM_015083.1	960	tgG/tgA																																																																															
CDK12	51755	MSKCC	GRCh37	17	37681066	37681066	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	109	413	0	ENST00000447079.4:c.3235del	p.Val1079Ter	p.V1079*	ENST00000447079	NM_015083.1	1079	Gtg/tg																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61305133	61305133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	88	493	0	ENST00000341074.5:c.993G>T	p.Lys331Asn	p.K331N	ENST00000341074	NM_002974.2	331	aaG/aaT																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031515	11031515	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1263062756		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	102	559	0	ENST00000327064.4:c.1430C>T	p.Thr477Met	p.T477M	ENST00000327064	NM_199141.1	477	aCg/aTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096052	11096052	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763471007		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	65	430	0	ENST00000344626.4:c.326C>T	p.Pro109Leu	p.P109L	ENST00000344626	NM_003072.3	109	cCg/cTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152026	11152026	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1016382250		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	52	407	0	ENST00000344626.4:c.4214G>A	p.Arg1405Gln	p.R1405Q	ENST00000344626	NM_003072.3	1405	cGg/cAg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423749	47423749	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	86	402	0	ENST00000404338.3:c.1817A>G	p.Asp606Gly	p.D606G	ENST00000404338	NM_004491.4	606	gAc/gGc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46574061	46574061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	94	444	0	ENST00000263734.3:c.76C>T	p.Arg26Trp	p.R26W	ENST00000263734	NM_001430.4	26	Cgg/Tgg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027326	48027326	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	56	411	0	ENST00000234420.5:c.2204T>C	p.Leu735Pro	p.L735P	ENST00000234420	NM_000179.2	735	cTa/cCa																																																																															
ACVR1	90	MSKCC	GRCh37	2	158617558	158617558	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	64	430	0	ENST00000263640.3:c.1098T>A	p.Asn366Lys	p.N366K	ENST00000263640	NM_001105.4	366	aaT/aaA																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538298	9538298	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	63	338	0	ENST00000353224.5:c.1700G>T	p.Arg567Met	p.R567M	ENST00000353224	NM_177990.2	567	aGg/aTg																																																																															
MYD88	4615	MSKCC	GRCh37	3	38181960	38181960	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	93	485	0	ENST00000396334.3:c.584T>G	p.Leu195Arg	p.L195R	ENST00000396334	NM_002468.4	195	cTg/cGg																																																																															
MITF	4286	MSKCC	GRCh37	3	70014076	70014076	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759306986		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	69	459	0	ENST00000352241.4:c.1240C>T	p.Arg414Trp	p.R414W	ENST00000352241	NM_198159.2	414	Cgg/Tgg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911634	134911634	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	59	381	0	ENST00000398015.3:c.2099T>C	p.Met700Thr	p.M700T	ENST00000398015	NM_004441.4	700	aTg/aCg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467911	66467911	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	24	413	0	ENST00000273854.3:c.358A>G	p.Asn120Asp	p.N120D	ENST00000273854	NM_004439.5	120	Aat/Gat																																																																															
TET2	54790	MSKCC	GRCh37	4	106193901	106193901	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	59	384	0	ENST00000380013.4:c.4363A>G	p.Arg1455Gly	p.R1455G	ENST00000380013	NM_001127208.2	1455	Agg/Ggg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268152	153268152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	68	345	0	ENST00000281708.4:c.656G>A	p.Gly219Glu	p.G219E	ENST00000281708	NM_033632.3	219	gGg/gAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187531131	187531131	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	78	331	0	ENST00000441802.2:c.9892T>A	p.Ser3298Thr	p.S3298T	ENST00000441802	NM_005245.3	3298	Tct/Act																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56152449	56152449	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	53	378	0	ENST00000399503.3:c.505A>G	p.Thr169Ala	p.T169A	ENST00000399503	NM_005921.1	169	Act/Gct																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56171124	56171124	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	30	311	0	ENST00000399503.3:c.1952A>G	p.Tyr651Cys	p.Y651C	ENST00000399503	NM_005921.1	651	tAc/tGc																																																																															
PIM1	5292	MSKCC	GRCh37	6	37139154	37139154	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	100	490	0	ENST00000373509.5:c.494A>G	p.His165Arg	p.H165R	ENST00000373509	NM_002648.3	165	cAc/cGc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106547269	106547269	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs774218047		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	94	454	0	ENST00000369096.4:c.506G>T	p.Arg169Leu	p.R169L	ENST00000369096	NM_001198.3	169	cGg/cTg																																																																															
SESN1	27244	MSKCC	GRCh37	6	109415275	109415275	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	89	362	0	ENST00000436639.2:c.2T>C	p.Met1?	p.M1?	ENST00000436639	NM_014454.2	1	aTg/aCg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004460	150004460	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	65	436	0	ENST00000253339.5:c.1765A>G	p.Lys589Glu	p.K589E	ENST00000253339		589	Aag/Gag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545732	106545732	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	42	345	0	ENST00000359195.3:c.3209A>T	p.Asp1070Val	p.D1070V	ENST00000359195	NM_002649.2	1070	gAt/gTt																																																																															
POT1	25913	MSKCC	GRCh37	7	124467293	124467293	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	30	297	0	ENST00000357628.3:c.1661T>A	p.Val554Glu	p.V554E	ENST00000357628	NM_015450.2	554	gTa/gAa																																																																															
SMO	6608	MSKCC	GRCh37	7	128846210	128846210	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	68	518	0	ENST00000249373.3:c.1140G>T	p.Gln380His	p.Q380H	ENST00000249373	NM_005631.4	380	caG/caT																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29197700	29197700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	114	397	0	ENST00000240100.2:c.494C>T	p.Ala165Val	p.A165V	ENST00000240100	NM_001394.6	165	gCa/gTa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205091	38205092	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	43	344	0	ENST00000317025.8:c.598dup	p.Ser200LysfsTer5	p.S200Kfs*5	ENST00000317025	NM_023034.1	200	agc/aAgc																																																																															
ABL1	25	MSKCC	GRCh37	9	133760439	133760439	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1421180473		P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	34	438	0	ENST00000318560.5:c.2762A>G	p.Glu921Gly	p.E921G	ENST00000318560	NM_005157.4	921	gAg/gGg																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841160	15841160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	57	562	0	ENST00000307771.7:c.1244G>A	p.Arg415Gln	p.R415Q	ENST00000307771	NM_005089.3	415	cGg/cAg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932938	39932938	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	65	475	0	ENST00000378444.4:c.1661T>C	p.Ile554Thr	p.I554T	ENST00000378444	NM_001123385.1	554	aTc/aCc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31322979	31322979	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	94	508	0	ENST00000412585.2:c.917T>C	p.Val306Ala	p.V306A	ENST00000412585	NM_005514.6	306	gTc/gCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	78	230	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882005		P-0071258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	101	252	0	ENST00000269305.4:c.713G>C	p.Cys238Ser	p.C238S	ENST00000269305	NM_001126112.2	238	tGt/tCt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0071258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	120	279	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0071258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	156	356	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020539	69020539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	108	286	0	ENST00000288368.4:c.2911G>T	p.Asp971Tyr	p.D971Y	ENST00000288368	NM_024870.2	971	Gat/Tat																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864944	117864944	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0071258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	117	237	0	ENST00000297338.2:c.1165T>G	p.Phe389Val	p.F389V	ENST00000297338	NM_006265.2	389	Ttt/Gtt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038526	47038526	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	100	365	0	ENST00000329236.7:c.457C>T	p.Arg153Ter	p.R153*	ENST00000329236	NM_001204466.1	153	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411291	63411291	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1408150272		P-0071258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	131	418	0	ENST00000330258.3:c.1876C>T	p.Arg626Ter	p.R626*	ENST00000330258	NM_152424.3	626	Cga/Tga																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94197320	94197320	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0071258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	94	248	0	ENST00000323929.3:c.1184T>G	p.Ile395Ser	p.I395S	ENST00000323929	NM_005591.3	395	aTt/aGt																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131310	17131310	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0071258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	109	331	0	ENST00000285071.4:c.142G>T	p.Glu48Ter	p.E48*	ENST00000285071	NM_144997.5	48	Gag/Tag																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522608	176522608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	119	413	0	ENST00000292408.4:c.1705G>A	p.Gly569Ser	p.G569S	ENST00000292408	NM_213647.1	569	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579361	7579361	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1064796722		P-0071353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	33	561	0	ENST00000269305.4:c.326T>C	p.Phe109Ser	p.F109S	ENST00000269305	NM_001126112.2	109	tTc/tCc																																																																															
APC	324	MSKCC	GRCh37	5	112162804	112162804	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0071353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	21	318	0	ENST00000257430.4:c.1409-1G>A		p.X470_splice	ENST00000257430	NM_000038.5	470																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31515165	31515165	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	28	409	1	ENST00000344624.3:c.1220T>A	p.Leu407His	p.L407H	ENST00000344624		407	cTt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0071358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	157	447	11	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41408924	41408924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778928297		P-0071358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	213	326	7	ENST00000373198.4:c.502G>A	p.Val168Ile	p.V168I	ENST00000373198	NM_133170.3	168	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112116586	112116587	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0071358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	32	263	0	ENST00000257430.4:c.636dup	p.Arg213ThrfsTer39	p.R213Tfs*39	ENST00000257430	NM_000038.5	211	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112175189	112175189	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	78	366	4	ENST00000257430.4:c.3899del	p.Asn1300IlefsTer5	p.N1300Ifs*5	ENST00000257430	NM_000038.5	1300	Aat/at																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982998	201982998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	180	387	15	ENST00000359651.3:c.847C>T	p.Leu283Phe	p.L283F	ENST00000359651		283	Ctc/Ttc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347344	89347344	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1486454956		P-0071358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	112	428	3	ENST00000301030.4:c.5606C>T	p.Pro1869Leu	p.P1869L	ENST00000301030	NM_001256183.1	1869	cCg/cTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0071359-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	19	169	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0071359-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	146	173	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0071359-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	227	250	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0071359-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	62	194	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133219254	133219254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071359-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	81	298	1	ENST00000320574.5:c.4790C>A	p.Ala1597Asp	p.A1597D	ENST00000320574	NM_006231.2	1597	gCc/gAc																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31237126	31237126	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0071359-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	273	218	0	ENST00000376228.5:c.1085T>G	p.Ile362Ser	p.I362S	ENST00000376228	NM_002117.5	362	aTc/aGc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815766	32815766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071359-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	51	190	0	ENST00000354258.4:c.1850C>T	p.Pro617Leu	p.P617L	ENST00000354258	NM_000593.5	617	cCc/cTc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967333	134967333	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071359-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	37	182	0	ENST00000398015.3:c.2672T>A	p.Val891Glu	p.V891E	ENST00000398015	NM_004441.4	891	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0071361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	51	552	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175746	112175746	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0071361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	55	322	0	ENST00000257430.4:c.4455del	p.Asp1486IlefsTer21	p.D1486Ifs*21	ENST00000257430	NM_000038.5	1485	gcT/gc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046461	30046461	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763048984		P-0071361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	28	370	0	ENST00000331968.5:c.2722C>T	p.Arg908Cys	p.R908C	ENST00000331968	NM_002742.2	908	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	30	181	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249507	153249507	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0071361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	22	143	0	ENST00000281708.4:c.1271T>G	p.Val424Gly	p.V424G	ENST00000281708	NM_033632.3	424	gTa/gGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0071369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	101	433	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0071369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	31	423	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175879	112175879	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0071369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	70	398	0	ENST00000257430.4:c.4588G>T	p.Glu1530Ter	p.E1530*	ENST00000257430	NM_000038.5	1530	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112170863	112170863	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1114167569		P-0071369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	33	273	0	ENST00000257430.4:c.1958+1G>A		p.X653_splice	ENST00000257430	NM_000038.5	653																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	36	270	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37061806	37061806	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	88	389	0	ENST00000231790.2:c.890A>G	p.Glu297Gly	p.E297G	ENST00000231790	NM_000249.3	297	gAa/gGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0071428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	23	150	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0071428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	47	257	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175569	112175569	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	40	319	0	ENST00000257430.4:c.4280del	p.Pro1427LeufsTer46	p.P1427Lfs*46	ENST00000257430	NM_000038.5	1426	agC/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	22	218	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0071439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			64	228	359	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94194178	94194178	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	49	206	0	ENST00000323929.3:c.1250T>C	p.Leu417Pro	p.L417P	ENST00000323929	NM_005591.3	417	cTt/cCt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535369	66535369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	22	330	0	ENST00000273854.3:c.92G>A	p.Cys31Tyr	p.C31Y	ENST00000273854	NM_004439.5	31	tGc/tAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993486	72993486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	55	416	0	ENST00000268489.5:c.559G>A	p.Ala187Thr	p.A187T	ENST00000268489	NM_006885.3	187	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0071500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	100	341	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
INSR	3643	MSKCC	GRCh37	19	7168073	7168073	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754537233		P-0071500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	78	266	0	ENST00000302850.5:c.1516C>T	p.Arg506Trp	p.R506W	ENST00000302850	NM_000208.2	506	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0071500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	232	427	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	162	318	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																															
ALK	238	MSKCC	GRCh37	2	29551329	29551329	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0071500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	94	338	0	ENST00000389048.3:c.1301A>C	p.Lys434Thr	p.K434T	ENST00000389048	NM_004304.4	434	aAg/aCg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10266559	10266559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	92	315	0	ENST00000340748.4:c.1414G>A	p.Gly472Ser	p.G472S	ENST00000340748		472	Ggt/Agt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659950	227659950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	94	394	0	ENST00000305123.5:c.3505G>A	p.Ala1169Thr	p.A1169T	ENST00000305123	NM_005544.2	1169	Gct/Act																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925326	114925326	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	209	296	1	ENST00000543371.1:c.1404G>T	p.Lys468Asn	p.K468N	ENST00000543371	NM_001198531.1	468	aaG/aaT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295820	212295820	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	60	231	0	ENST00000342788.4:c.2493G>C	p.Met831Ile	p.M831I	ENST00000342788	NM_005235.2	831	atG/atC																																																																															
JUN	3725	MSKCC	GRCh37	1	59247841	59247841	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	201	367	0	ENST00000371222.2:c.902T>C	p.Leu301Pro	p.L301P	ENST00000371222	NM_002228.3	301	cTc/cCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579415	7579415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071526-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	469	476	0	ENST00000269305.4:c.272G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tGg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112163698	112163698	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854572		P-0071526-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	110	209	0	ENST00000257430.4:c.1621C>T	p.Gln541Ter	p.Q541*	ENST00000257430	NM_000038.5	541	Cag/Tag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0071526-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	293	262	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0071526-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	149	296	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
MPL	4352	MSKCC	GRCh37	1	43812574	43812574	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200454070		P-0071526-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	132	385	0	ENST00000372470.3:c.1277G>A	p.Arg426Gln	p.R426Q	ENST00000372470	NM_005373.2	426	cGa/cAa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120454	70120454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071526-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	125	426	0	ENST00000245479.2:c.1456G>T	p.Val486Phe	p.V486F	ENST00000245479	NM_000346.3	486	Gtc/Ttc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273174	55273174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071526-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			769	100	371	0	ENST00000275493.2:c.3497G>A	p.Ser1166Asn	p.S1166N	ENST00000275493	NM_005228.3	1166	aGc/aAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			338	35	312	1	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39325282	39325282	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1266744229		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			345	20	330	1	ENST00000373001.3:c.37G>A	p.Ala13Thr	p.A13T	ENST00000373001	NM_022157.3	13	Gcc/Acc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	47	216	1	ENST00000262741.5:c.883del	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89693003	89693003	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			207	30	165	0	ENST00000371953.3:c.491del	p.Lys164ArgfsTer3	p.K164Rfs*3	ENST00000371953	NM_000314.4	163	Aaa/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			308	94	247	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925597	114925597	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			411	74	329	1	ENST00000543371.1:c.1679del	p.Pro560GlnfsTer42	p.P560Qfs*42	ENST00000543371	NM_001198531.1	559	Ccc/cc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71945397	71945397	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374511786		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			446	62	325	1	ENST00000298229.2:c.2285G>A	p.Arg762His	p.R762H	ENST00000298229	NM_001567.3	762	cGc/cAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			395	47	430	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448407	49448408	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			436	51	325	0	ENST00000301067.7:c.303dup	p.Ser102GlufsTer6	p.S102Efs*6	ENST00000301067	NM_003482.3	101	-/G																																																																															
DICER1	23405	MSKCC	GRCh37	14	95573958	95573958	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1256068472		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			282	34	178	0	ENST00000343455.3:c.2791G>A	p.Val931Ile	p.V931I	ENST00000343455	NM_177438.2	931	Gtt/Att																																																																															
MGA	23269	MSKCC	GRCh37	15	42035256	42035256	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374543045		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			579	71	335	0	ENST00000219905.7:c.5098G>A	p.Val1700Met	p.V1700M	ENST00000219905	NM_001164273.1	1700	Gtg/Atg																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			370	49	298	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
B2M	567	MSKCC	GRCh37	15	45007895	45007896	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			426	61	259	0	ENST00000558401.1:c.343_344del	p.Trp115GlyfsTer12	p.W115Gfs*12	ENST00000558401	NM_004048.2	114	aaGTgg/aagg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347909	347909	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			468	76	386	0	ENST00000262320.3:c.1597C>T	p.Arg533Ter	p.R533*	ENST00000262320	NM_003502.3	533	Cga/Tga																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	23	133	1	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89345512	89345512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			286	30	214	0	ENST00000301030.4:c.7438G>A	p.Gly2480Ser	p.G2480S	ENST00000301030	NM_001256183.1	2480	Ggc/Agc																																																																															
RARA	5914	MSKCC	GRCh37	17	38512309	38512309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			307	50	242	0	ENST00000254066.5:c.1220C>T	p.Pro407Leu	p.P407L	ENST00000254066	NM_000964.3	407	cCg/cTg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40460232	40460232	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746268770		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			416	64	270	0	ENST00000345506.4:c.1943C>T	p.Thr648Met	p.T648M	ENST00000345506	NM_003152.3	648	aCg/aTg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4102376	4102376	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs767381558		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			346	55	256	0	ENST00000262948.5:c.526G>A	p.Ala176Thr	p.A176T	ENST00000262948	NM_030662.3	176	Gcg/Acg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10271082	10271082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1361695976		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			390	52	224	0	ENST00000340748.4:c.973C>T	p.Arg325Cys	p.R325C	ENST00000340748		325	Cgc/Tgc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145645	11145645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			455	66	344	1	ENST00000344626.4:c.4007G>A	p.Arg1336His	p.R1336H	ENST00000344626	NM_003072.3	1336	cGc/cAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288789	15288789	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			244	46	263	0	ENST00000263388.2:c.3950del	p.Pro1317GlnfsTer103	p.P1317Qfs*103	ENST00000263388	NM_000435.2	1317	cCa/ca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			503	218	353	1	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			712	79	427	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227707	36227707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1454808380		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			678	85	382	0	ENST00000222270.7:c.7276G>A	p.Val2426Ile	p.V2426I	ENST00000222270	NM_014727.1	2426	Gtt/Att																																																																															
AKT2	208	MSKCC	GRCh37	19	40743887	40743887	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774959037		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			559	63	283	0	ENST00000392038.2:c.820C>T	p.Arg274Cys	p.R274C	ENST00000392038	NM_001626.4	274	Cgc/Tgc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906370	50906370	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1476299445		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			549	42	352	1	ENST00000440232.2:c.1036del	p.Glu346SerfsTer47	p.E346Sfs*47	ENST00000440232	NM_002691.3	344	tGg/tg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52705261	52705261	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770424653		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			624	87	323	0	ENST00000322088.6:c.143G>A	p.Arg48Gln	p.R48Q	ENST00000322088	NM_014225.5	48	cGa/cAa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47639588	47639588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			258	19	126	0	ENST00000233146.2:c.687del	p.Ala230LeufsTer16	p.A230Lfs*16	ENST00000233146	NM_000251.2	227	agA/ag																																																																															
IDH1	3417	MSKCC	GRCh37	2	209108184	209108184	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778401		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			273	34	163	0	ENST00000345146.2:c.665G>A	p.Arg222His	p.R222H	ENST00000345146	NM_005896.2	222	cGt/cAt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31395677	31395677	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1267164985		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			490	83	325	1	ENST00000328111.2:c.2530G>A	p.Ala844Thr	p.A844T	ENST00000328111	NM_006892.3	844	Gcc/Acc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713424	30713425	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			549	101	374	0	ENST00000359013.4:c.828dup	p.Lys277GlufsTer6	p.K277Efs*6	ENST00000359013	NM_001024847.2	275	gtg/gtGg																																																																															
RHOA	387	MSKCC	GRCh37	3	49397677	49397677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	55	251	0	ENST00000418115.1:c.547C>T	p.Arg183Cys	p.R183C	ENST00000418115	NM_001664.2	183	Cgt/Tgt																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149245623	149245623	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			376	57	221	0	ENST00000360632.3:c.905G>T	p.Gly302Val	p.G302V	ENST00000360632	NM_015472.4	302	gGa/gTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	55	234	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TET2	54790	MSKCC	GRCh37	4	106156576	106156576	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			489	69	311	0	ENST00000380013.4:c.1477G>T	p.Ala493Ser	p.A493S	ENST00000380013	NM_001127208.2	493	Gca/Tca																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			315	55	238	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
SDHA	6389	MSKCC	GRCh37	5	224547	224547	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs781764920		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			308	18	162	0	ENST00000264932.6:c.223C>T	p.Arg75Ter	p.R75*	ENST00000264932	NM_004168.2	75	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589247	67589247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			176	41	188	0	ENST00000274335.5:c.1235C>T	p.Ser412Phe	p.S412F	ENST00000274335		412	tCt/tTt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			133	24	111	1	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86682702	86682703	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			178	23	154	0	ENST00000274376.6:c.2912dup	p.Leu971PhefsTer3	p.L971Ffs*3	ENST00000274376	NM_002890.2	969	-/T																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	43	186	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			550	59	297	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517532	176517532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200146267		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			348	64	319	0	ENST00000292408.4:c.233G>A	p.Arg78His	p.R78H	ENST00000292408	NM_213647.1	78	cGt/cAt																																																																															
SESN1	27244	MSKCC	GRCh37	6	109321766	109321766	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			334	39	210	0	ENST00000436639.2:c.657del	p.Lys219AsnfsTer5	p.K219Nfs*5	ENST00000436639	NM_014454.2	219	aaA/aa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859859	151859859	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			497	28	325	0	ENST00000262189.6:c.10803del	p.Lys3604ArgfsTer26	p.K3604Rfs*26	ENST00000262189	NM_170606.2	3601	aaA/aa																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2029140	2029140	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374826893		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			498	70	389	0	ENST00000349721.2:c.118G>A	p.Val40Ile	p.V40I	ENST00000349721	NM_003070.3	40	Gtc/Atc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772951	135772951	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs397514875		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	50	211	0	ENST00000298552.3:c.2672del	p.Asn891ThrfsTer40	p.N891Tfs*40	ENST00000298552	NM_001162426.1	891	aAc/ac																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			316	46	219	1	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038781	47038781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			335	67	292	0	ENST00000329236.7:c.557G>A	p.Arg186Gln	p.R186Q	ENST00000329236	NM_001204466.1	186	cGg/cAg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			473	67	472	0	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
STAG2	10735	MSKCC	GRCh37	X	123224544	123224544	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1400154883		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			437	60	245	0	ENST00000218089.9:c.3397C>T	p.Arg1133Trp	p.R1133W	ENST00000218089	NM_001042749.1	1133	Cgg/Tgg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946388	71946388	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			495	56	346	0	ENST00000298229.2:c.2552A>C	p.Gln851Pro	p.Q851P	ENST00000298229	NM_001567.3	851	cAg/cCg																																																																															
ATM	472	MSKCC	GRCh37	11	108155194	108155194	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			241	17	172	0	ENST00000278616.4:c.3990del	p.Lys1330AsnfsTer19	p.K1330Nfs*19	ENST00000278616	NM_000051.3	1329	ggA/gg																																																																															
BLM	641	MSKCC	GRCh37	15	91312793	91312793	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			308	71	203	0	ENST00000355112.3:c.2532G>T	p.Gln844His	p.Q844H	ENST00000355112	NM_000057.2	844	caG/caT																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354351	354351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	65	265	0	ENST00000262320.3:c.1207C>T	p.Arg403Trp	p.R403W	ENST00000262320	NM_003502.3	403	Cgg/Tgg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3824674	3824674	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1466464050		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			437	67	283	0	ENST00000262367.5:c.2179A>G	p.Met727Val	p.M727V	ENST00000262367	NM_004380.2	727	Atg/Gtg																																																																															
CDH1	999	MSKCC	GRCh37	16	68856013	68856013	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			439	74	331	0	ENST00000261769.5:c.1823del	p.Lys608SerfsTer5	p.K608Sfs*5	ENST00000261769	NM_004360.3	607	ccA/cc																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544309	86544309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			361	37	363	0	ENST00000262426.4:c.134G>A	p.Arg45His	p.R45H	ENST00000262426	NM_001451.2	45	cGc/cAc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59885944	59885944	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			442	92	259	0	ENST00000259008.2:c.802T>C	p.Tyr268His	p.Y268H	ENST00000259008	NM_032043.2	268	Tat/Cat																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78857663	78857663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			431	77	334	0	ENST00000306801.3:c.1733C>T	p.Ala578Val	p.A578V	ENST00000306801	NM_020761.2	578	gCc/gTc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214403	5214403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			499	32	347	0	ENST00000357368.4:c.4583C>T	p.Thr1528Ile	p.T1528I	ENST00000357368	NM_002850.3	1528	aCa/aTa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276779	15276779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			485	61	346	0	ENST00000263388.2:c.5486C>T	p.Ala1829Val	p.A1829V	ENST00000263388	NM_000435.2	1829	gCt/gTt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211312	36211312	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			691	75	368	1	ENST00000222270.7:c.1067del	p.Lys356SerfsTer31	p.K356Sfs*31	ENST00000222270	NM_014727.1	355	Aaa/aa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47705421	47705422	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			262	28	169	0	ENST00000233146.2:c.2222_2223del	p.Lys741ArgfsTer8	p.K741Rfs*8	ENST00000233146	NM_000251.2	741	AAa/a																																																																															
XPO1	7514	MSKCC	GRCh37	2	61711123	61711123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	34	202	0	ENST00000401558.2:c.2626G>A	p.Asp876Asn	p.D876N	ENST00000401558	NM_003400.3	876	Gat/Aat																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206893	36206893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			313	65	203	0	ENST00000300305.3:c.619C>T	p.Arg207Trp	p.R207W	ENST00000300305		207	Cgg/Tgg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41279568	41279568	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			391	63	222	0	ENST00000349496.5:c.2137+1G>A		p.X713_splice	ENST00000349496	NM_001904.3	713																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52595833	52595833	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			540	42	274	0	ENST00000394830.3:c.4082T>C	p.Val1361Ala	p.V1361A	ENST00000394830	NM_018313.4	1361	gTg/gCg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643705	52643705	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1233447219		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			346	59	230	0	ENST00000394830.3:c.2191A>G	p.Met731Val	p.M731V	ENST00000394830	NM_018313.4	731	Atg/Gtg																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858485	27858486	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			548	35	410	0	ENST00000359303.2:c.85dup	p.Ser29LysfsTer23	p.S29Kfs*23	ENST00000359303	NM_003535.2	29	agc/aAgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55266448	55266448	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			479	38	320	0	ENST00000275493.2:c.2740C>G	p.Pro914Ala	p.P914A	ENST00000275493	NM_005228.3	914	Cca/Gca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151871283	151871283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			308	18	165	0	ENST00000262189.6:c.9307G>A	p.Ala3103Thr	p.A3103T	ENST00000262189	NM_170606.2	3103	Gcc/Acc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162871	38162871	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772334719		P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			494	60	268	0	ENST00000317025.8:c.2335G>A	p.Val779Ile	p.V779I	ENST00000317025	NM_023034.1	779	Gtc/Atc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141545664	141545664	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			451	56	307	0	ENST00000220592.5:c.2174G>T	p.Gly725Val	p.G725V	ENST00000220592	NM_012154.3	725	gGg/gTg																																																																															
CDKN2B-AS1	100048912	MSKCC	GRCh37	9	21994201	21994201	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0071546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			296	31	279	0				ENST00000428597																																																																																		
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0071561-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	12	649	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118377109	118377110	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0071561-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	12	606	0	ENST00000534358.1:c.10502_10503insT	p.Lys3502GlnfsTer37	p.K3502Qfs*37	ENST00000534358	NM_005933.3	3501	aac/aaTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0071604-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	218	450	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071604-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	226	503	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114799803	114799803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071604-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	80	369	0	ENST00000543371.1:c.470C>T	p.Pro157Leu	p.P157L	ENST00000543371	NM_001198531.1	157	cCa/cTa																																																																															
CDK8	1024	MSKCC	GRCh37	13	26975440	26975440	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071604-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	596	503	0	ENST00000381527.3:c.1066C>T	p.Arg356Ter	p.R356*	ENST00000381527	NM_001260.1	356	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398283	25398284	+	missense_variant	Missense_Mutation	DNP	AC	AC	GA			P-0071604-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	56	342	0	ENST00000256078.4:c.35_36delinsTC	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGT/gTC																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119934	70119935	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0071604-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	111	568	0	ENST00000245479.2:c.937_938dup	p.Thr314SerfsTer70	p.T314Sfs*70	ENST00000245479	NM_000346.3	312	-/GT																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99172226	99172226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071604-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	164	806	0	ENST00000074304.5:c.1792C>T	p.Pro598Ser	p.P598S	ENST00000074304	NM_001134224.1	598	Ccc/Tcc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0071609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	88	392	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0071609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	90	546	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0071609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	28	347	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0071609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	21	507	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0071609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	24	343	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968260	2968260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	35	486	1	ENST00000396946.4:c.1726C>T	p.Arg576Cys	p.R576C	ENST00000396946	NM_032415.4	576	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222730	5222730	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374875451		P-0071609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	114	419	0	ENST00000357368.4:c.3073G>A	p.Val1025Ile	p.V1025I	ENST00000357368	NM_002850.3	1025	Gtc/Atc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864658	68864658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1418006656		P-0071609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	89	323	0	ENST00000288368.4:c.29G>A	p.Arg10His	p.R10H	ENST00000288368	NM_024870.2	10	cGc/cAc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533850	63533850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	30	582	0	ENST00000307078.5:c.1304C>T	p.Pro435Leu	p.P435L	ENST00000307078	NM_004655.3	435	cCg/cTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120124	70120124	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	30	526	0	ENST00000245479.2:c.1126C>T	p.Gln376Ter	p.Q376*	ENST00000245479	NM_000346.3	376	Cag/Tag																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121437163	121437163	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1421619915		P-0071609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	34	566	0	ENST00000257555.6:c.1594G>A	p.Ala532Thr	p.A532T	ENST00000257555		532	Gcc/Acc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446070	49446070	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201512665		P-0071609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			794	149	784	0	ENST00000301067.7:c.1396C>T	p.Arg466Cys	p.R466C	ENST00000301067	NM_003482.3	466	Cgc/Tgc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198274589	198274589	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1193846732		P-0071609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	162	482	0	ENST00000335508.6:c.809G>A	p.Arg270Gln	p.R270Q	ENST00000335508	NM_012433.2	270	cGa/cAa																																																																															
BLM	641	MSKCC	GRCh37	15	91293084	91293084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	33	542	0	ENST00000355112.3:c.586G>A	p.Ala196Thr	p.A196T	ENST00000355112	NM_000057.2	196	Gca/Aca																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222708	53222708	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0071609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	138	263	0	ENST00000375401.3:c.4228G>T	p.Glu1410Ter	p.E1410*	ENST00000375401	NM_004187.3	1410	Gag/Tag																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175857	24175859	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0071613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	87	534	2	ENST00000263121.7:c.1091_1093del	p.Lys364del	p.K364del	ENST00000263121	NM_003073.3	362	gAGAag/gag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484345	8484347	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs1282828198		P-0071613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	82	405	4	ENST00000356435.5:c.3185_3187del	p.Glu1062del	p.E1062del	ENST00000356435		1062	gAAGtg/gtg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039356	47039358	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0071613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	169	257	14	ENST00000329236.7:c.754_756del	p.Ser252del	p.S252del	ENST00000329236	NM_001204466.1	250	TCC/-																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0071613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	225	518	17	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57857533	57857533	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199861974		P-0071613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	111	461	6	ENST00000228682.2:c.59G>A	p.Arg20Gln	p.R20Q	ENST00000228682	NM_005269.2	20	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-	rs587780067		P-0071613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	204	512	10	ENST00000269305.4:c.365_366del	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562577	21562577	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1395329857		P-0071613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	88	416	2	ENST00000382592.4:c.1342C>T	p.Arg448Cys	p.R448C	ENST00000382592	NM_014572.2	448	Cgt/Tgt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862845	9862845	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764289741		P-0071613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	68	457	2	ENST00000330684.3:c.2458G>A	p.Val820Ile	p.V820I	ENST00000330684	NM_001134407.1	820	Gta/Ata																																																																															
ROS1	6098	MSKCC	GRCh37	6	117638326	117638326	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752085591		P-0071613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	90	451	1	ENST00000368508.3:c.6115C>T	p.Arg2039Cys	p.R2039C	ENST00000368508	NM_002944.2	2039	Cgt/Tgt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43738607	43738608	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0071613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	72	403	2	ENST00000382044.4:c.3017_3018del	p.Glu1006ValfsTer13	p.E1006Vfs*13	ENST00000382044	NM_001141980.1	1006	gAG/g																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878867	151878868	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0071613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	127	548	9	ENST00000262189.6:c.6077_6078del	p.Tyr2026CysfsTer11	p.Y2026Cfs*11	ENST00000262189	NM_170606.2	2026	tAT/t																																																																															
USP8	9101	MSKCC	GRCh37	15	50774120	50774121	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0071613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	115	560	4	ENST00000307179.4:c.1662_1663del	p.Ser555Ter	p.S555*	ENST00000307179		554	cAA/c																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2164262	2164262	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0071613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	67	421	0	ENST00000398665.3:c.79T>A	p.Tyr27Asn	p.Y27N	ENST00000398665	NM_032482.2	27	Tac/Aac																																																																															
MGA	23269	MSKCC	GRCh37	15	41989039	41989039	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs982272047		P-0071613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	127	537	4	ENST00000219905.7:c.1831C>G	p.Pro611Ala	p.P611A	ENST00000219905	NM_001164273.1	611	Cct/Gct																																																																															
FAT1	2195	MSKCC	GRCh37	4	187522425	187522425	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0071613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	81	341	3	ENST00000441802.2:c.11638G>C	p.Glu3880Gln	p.E3880Q	ENST00000441802	NM_005245.3	3880	Gag/Cag																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942505	17942507	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs775752154		P-0071613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	30	424	0	ENST00000458235.1:c.2781_2783del	p.Leu928del	p.L928del	ENST00000458235	NM_000215.3	927	ctTCTc/ctc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0071627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	26	311	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577098	7577098	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0071627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	47	388	0	ENST00000269305.4:c.840A>C	p.Arg280Ser	p.R280S	ENST00000269305	NM_001126112.2	280	agA/agC																																																																															
MED12	9968	MSKCC	GRCh37	X	70339930	70339930	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866469400		P-0071627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	47	378	0	ENST00000374080.3:c.463C>T	p.Arg155Trp	p.R155W	ENST00000374080		155	Cgg/Tgg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515144	149515144	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764662524		P-0071627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	46	381	0	ENST00000261799.4:c.338G>A	p.Arg113Gln	p.R113Q	ENST00000261799	NM_002609.3	113	cGg/cAg																																																																															
BARD1	580	MSKCC	GRCh37	2	215593626	215593626	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0071627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	23	369	0	ENST00000260947.4:c.2108T>G	p.Leu703Arg	p.L703R	ENST00000260947	NM_000465.2	703	cTc/cGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0071628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	110	206	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0071628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	245	452	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175746	112175746	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0071628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	432	413	0	ENST00000257430.4:c.4455del	p.Asp1486IlefsTer21	p.D1486Ifs*21	ENST00000257430	NM_000038.5	1485	gcT/gc																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40679361	40679361	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0071628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	117	279	0	ENST00000249776.8:c.439C>G	p.Gln147Glu	p.Q147E	ENST00000249776	NM_033286.3	147	Caa/Gaa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37649143	37649143	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0071628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	290	285	0	ENST00000447079.4:c.2248G>A	p.Gly750Arg	p.G750R	ENST00000447079	NM_015083.1	750	Gga/Aga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120247	70120248	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0071628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	511	548	0	ENST00000245479.2:c.1251_1252dup	p.Ile418ArgfsTer53	p.I418Rfs*53	ENST00000245479	NM_000346.3	417	cag/cAGag																																																																															
SESN1	27244	MSKCC	GRCh37	6	109319739	109319739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	163	269	0	ENST00000436639.2:c.949G>A	p.Val317Ile	p.V317I	ENST00000436639	NM_014454.2	317	Gtc/Atc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0071631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	54	233	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0071631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	240	501	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
APC	324	MSKCC	GRCh37	5	112175225	112175225	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	112	477	0	ENST00000257430.4:c.3935del	p.Gly1312GlufsTer9	p.G1312Efs*9	ENST00000257430	NM_000038.5	1312	Gga/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0071631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	105	325	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112170801	112170801	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0071631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	214	464	0	ENST00000257430.4:c.1897G>T	p.Glu633Ter	p.E633*	ENST00000257430	NM_000038.5	633	Gaa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710522	114710522	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	131	479	0	ENST00000543371.1:c.7C>T	p.Gln3Ter	p.Q3*	ENST00000543371	NM_001198531.1	3	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0071646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			70	92	517	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PARP1	142	MSKCC	GRCh37	1	226567661	226567661	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183533639		P-0071646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			81	51	507	0	ENST00000366794.5:c.1505C>T	p.Ala502Val	p.A502V	ENST00000366794	NM_001618.3	502	gCg/gTg																																																																															
RET	5979	MSKCC	GRCh37	10	43595967	43595967	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763526874		P-0071646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	13	473	1	ENST00000355710.3:c.134C>T	p.Ala45Val	p.A45V	ENST00000355710	NM_020975.4	45	gCa/gTa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562430	21562430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	71	484	0	ENST00000382592.4:c.1489G>A	p.Ala497Thr	p.A497T	ENST00000382592	NM_014572.2	497	Gca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	17	277	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175563	112175563	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	41	553	0	ENST00000257430.4:c.4272del	p.Asp1425IlefsTer48	p.D1425Ifs*48	ENST00000257430	NM_000038.5	1424	ccA/cc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281070	49281071	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0071646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	15	394	0	ENST00000282018.3:c.122dup	p.Ile43AsnfsTer26	p.I43Nfs*26	ENST00000282018	NM_020377.2	39	-/T																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33680142	33680142	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs80209975		P-0071736-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			186	21	349	0	ENST00000308377.4:c.1939C>T	p.Arg647Ter	p.R647*	ENST00000308377	NM_152270.3	647	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071736-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			94	53	547	0	ENST00000342988.3:c.988G>C	p.Glu330Gln	p.E330Q	ENST00000342988	NM_005359.5	330	Gaa/Caa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741187	145741187	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs117670586		P-0071736-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			589	33	555	0	ENST00000428558.2:c.1219G>A	p.Glu407Lys	p.E407K	ENST00000428558	NM_004260.3	407	Gag/Aag																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730023	41730023	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071736-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			435	38	507	0	ENST00000242208.4:c.506C>A	p.Thr169Asn	p.T169N	ENST00000242208	NM_002192.2	169	aCc/aAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	57	522	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	39	363	3	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535352	66535352	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368790458		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	60	532	0	ENST00000273854.3:c.109C>T	p.Arg37Trp	p.R37W	ENST00000273854	NM_004439.5	37	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	94	714	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	11	122	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	75	495	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	73	633	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15308383	15308383	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	66	580	2	ENST00000263388.2:c.125del	p.Pro42LeufsTer194	p.P42Lfs*194	ENST00000263388	NM_000435.2	42	cCt/ct																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	85	538	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	78	516	2	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021276	31021277	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1187950456		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	104	647	0	ENST00000375687.4:c.1281dup	p.Gln428ThrfsTer10	p.Q428Tfs*10	ENST00000375687	NM_015338.5	425	-/A																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247489	71247489	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs532329866		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	70	488	1	ENST00000318789.4:c.44C>T	p.Ala15Val	p.A15V	ENST00000318789	NM_032682.5	15	gCc/gTc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971292	13971292	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772105404		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	93	582	0	ENST00000405192.2:c.637C>T	p.Arg213Cys	p.R213C	ENST00000405192	NM_001163147.1	213	Cgc/Tgc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987214	2987214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	70	491	0	ENST00000396946.4:c.215G>A	p.Arg72Gln	p.R72Q	ENST00000396946	NM_032415.4	72	cGa/cAa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440757	56440757	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774211426		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	98	615	1	ENST00000407977.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000407977		154	cCg/cTg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564530	86564530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	80	577	0	ENST00000274376.6:c.266del	p.Gly89GlufsTer7	p.G89Efs*7	ENST00000274376	NM_002890.2	88	Ggg/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771831816		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	75	739	2	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137784	64137784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	72	644	0	ENST00000334205.4:c.1885C>T	p.Arg629Cys	p.R629C	ENST00000334205	NM_003942.2	629	Cgc/Tgc																																																																															
TET2	54790	MSKCC	GRCh37	4	106193892	106193892	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1049545383		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	74	495	0	ENST00000380013.4:c.4354C>T	p.Arg1452Ter	p.R1452*	ENST00000380013	NM_001127208.2	1452	Cga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499363	89499363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1317589623		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	84	590	0	ENST00000336596.2:c.2538del	p.Met847TrpfsTer10	p.M847Wfs*10	ENST00000336596	NM_005233.5	845	Ccc/cc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346157	89346158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	79	626	4	ENST00000301030.4:c.6792dup	p.Ala2265ArgfsTer8	p.A2265Rfs*8	ENST00000301030	NM_001256183.1	2264	-/C																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149499034	149499034	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs921756253		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	64	552	0	ENST00000261799.4:c.2794G>A	p.Glu932Lys	p.E932K	ENST00000261799	NM_002609.3	932	Gag/Aag																																																																															
RB1	5925	MSKCC	GRCh37	13	49039484	49039484	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	68	487	0	ENST00000267163.4:c.2473del	p.Met825Ter	p.M825*	ENST00000267163	NM_000321.2	823	acA/ac																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	79	556	0	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
MED12	9968	MSKCC	GRCh37	X	70342602	70342602	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1268612180		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	75	547	0	ENST00000374080.3:c.1363C>T	p.Arg455Trp	p.R455W	ENST00000374080		455	Cgg/Tgg																																																																															
BARD1	580	MSKCC	GRCh37	2	215645974	215645975	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs587780033		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	56	572	0	ENST00000260947.4:c.623dup	p.Lys209GlufsTer5	p.K209Efs*5	ENST00000260947	NM_000465.2	208	aag/aaAg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739871	46739871	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769214858		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	83	518	0	ENST00000371975.4:c.1672C>T	p.Arg558Cys	p.R558C	ENST00000371975	NM_003579.3	558	Cgc/Tgc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856283	111856283	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1420086510		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	40	442	0	ENST00000341259.2:c.334G>A	p.Ala112Thr	p.A112T	ENST00000341259	NM_005475.2	112	Gcc/Acc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513451	149513451	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754451292		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	78	687	0	ENST00000261799.4:c.752G>A	p.Arg251His	p.R251H	ENST00000261799	NM_002609.3	251	cGc/cAc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016562	12016562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	38	429	0	ENST00000353533.5:c.698C>T	p.Ser233Phe	p.S233F	ENST00000353533	NM_003010.3	233	tCc/tTc																																																																															
MED12	9968	MSKCC	GRCh37	X	70348536	70348536	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387907360		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	67	567	0	ENST00000374080.3:c.3443G>A	p.Arg1148His	p.R1148H	ENST00000374080		1148	cGc/cAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881620	37881620	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1196082930		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	86	530	0	ENST00000269571.5:c.2690G>A	p.Arg897Gln	p.R897Q	ENST00000269571		897	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437711	49437713	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs886049482		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	94	690	0	ENST00000301067.7:c.5257_5259del	p.Lys1753del	p.K1753del	ENST00000301067	NM_003482.3	1753	AAG/-																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874713	151874713	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	87	643	0	ENST00000262189.6:c.7825C>T	p.Arg2609Ter	p.R2609*	ENST00000262189	NM_170606.2	2609	Cga/Tga																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436584	110436584	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377510110		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	55	611	0	ENST00000375856.3:c.1817C>T	p.Ser606Leu	p.S606L	ENST00000375856	NM_003749.2	606	tCg/tTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15989709	15989709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371483872		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	89	587	0	ENST00000268712.3:c.3064G>A	p.Val1022Ile	p.V1022I	ENST00000268712	NM_006311.3	1022	Gtt/Att																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112323	115112324	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-	rs1381943852		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	50	521	1	ENST00000257566.3:c.1416_1417del	p.Leu473ProfsTer218	p.L473Pfs*218	ENST00000257566	NM_016569.3	472	gcGCtc/gctc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274189	10274189	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367543129		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	56	461	0	ENST00000330684.3:c.80C>T	p.Ala27Val	p.A27V	ENST00000330684	NM_001134407.1	27	gCg/gTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199618	16199618	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs953954789		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	82	567	0	ENST00000375759.3:c.391C>T	p.Arg131Trp	p.R131W	ENST00000375759	NM_015001.2	131	Cgg/Tgg																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983281	149983281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749247753		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	48	556	0	ENST00000253339.5:c.2977G>A	p.Glu993Lys	p.E993K	ENST00000253339		993	Gaa/Aaa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965359	25965359	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377609636		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	80	660	0	ENST00000435504.4:c.3847C>T	p.Arg1283Cys	p.R1283C	ENST00000435504		1283	Cgt/Tgt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683247	88683247	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752802257		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	82	507	0	ENST00000372037.3:c.1457G>A	p.Arg486Gln	p.R486Q	ENST00000372037	NM_004329.2	486	cGg/cAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89354977	89354977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	66	568	0	ENST00000301030.4:c.703G>A	p.Asp235Asn	p.D235N	ENST00000301030	NM_001256183.1	235	Gac/Aac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223932	36223932	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747873093		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	91	752	0	ENST00000222270.7:c.6482G>A	p.Arg2161His	p.R2161H	ENST00000222270	NM_014727.1	2161	cGc/cAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376815	118376815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	75	614	0	ENST00000534358.1:c.10208C>T	p.Pro3403Leu	p.P3403L	ENST00000534358	NM_005933.3	3403	cCg/cTg																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30133175	30133175	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771152806		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	72	508	0	ENST00000263025.4:c.323G>A	p.Arg108Gln	p.R108Q	ENST00000263025	NM_002746.2	108	cGg/cAg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206652477	206652477	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs781999092		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	85	504	0	ENST00000367120.3:c.1183+1G>A		p.X395_splice	ENST00000367120	NM_014002.3	395																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11134252	11134252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	80	517	0	ENST00000344626.4:c.2918G>A	p.Arg973Gln	p.R973Q	ENST00000344626	NM_003072.3	973	cGg/cAg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139834	55139834	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746574289		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	73	525	0	ENST00000257290.5:c.1495G>A	p.Val499Met	p.V499M	ENST00000257290	NM_006206.4	499	Gtg/Atg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157256646	157256646	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	59	445	0	ENST00000346085.5:c.1977del	p.Gly660GlufsTer8	p.G660Efs*8	ENST00000346085	NM_020732.3	658	gCc/gc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781230	9781230	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1255847906		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	70	497	0	ENST00000377346.4:c.1735G>A	p.Ala579Thr	p.A579T	ENST00000377346	NM_005026.3	579	Gcc/Acc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891591	151891591	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	62	488	0	ENST00000262189.6:c.4441C>T	p.Arg1481Ter	p.R1481*	ENST00000262189	NM_170606.2	1481	Cga/Tga																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29440867	29440867	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1188411932		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	82	474	1	ENST00000544604.2:c.733C>T	p.Arg245Ter	p.R245*	ENST00000544604	NM_001206998.1	245	Cga/Tga																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099210	4099210	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1251433138		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	62	492	1	ENST00000262948.5:c.908G>A	p.Arg303His	p.R303H	ENST00000262948	NM_030662.3	303	cGc/cAc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43766892	43766892	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	59	468	0	ENST00000382044.4:c.1159A>G	p.Thr387Ala	p.T387A	ENST00000382044	NM_001141980.1	387	Aca/Gca																																																																															
CD276	80381	MSKCC	GRCh37	15	73995365	73995365	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	63	500	0	ENST00000318443.5:c.671A>G	p.Asn224Ser	p.N224S	ENST00000318443	NM_001024736.1	224	aAc/aGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879483	151879483	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1281351763		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	81	535	0	ENST00000262189.6:c.5462C>A	p.Pro1821His	p.P1821H	ENST00000262189	NM_170606.2	1821	cCt/cAt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462954	120462954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	80	545	0	ENST00000256646.2:c.5377C>T	p.His1793Tyr	p.H1793Y	ENST00000256646	NM_024408.3	1793	Cac/Tac																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981831	63981832	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs779764089		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	69	682	2	ENST00000295900.6:c.2340dup	p.Thr781HisfsTer6	p.T781Hfs*6	ENST00000295900	NM_000333.3	778	ggc/ggCc																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383828	84383828	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	55	452	0	ENST00000321945.7:c.1024C>T	p.Gln342Ter	p.Q342*	ENST00000321945	NM_139076.2	342	Caa/Taa																																																																															
POLE	5426	MSKCC	GRCh37	12	133226335	133226337	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	54	609	0	ENST00000320574.5:c.3721_3723del	p.Glu1241del	p.E1241del	ENST00000320574	NM_006231.2	1241	GAG/-																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110297	3110297	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756991534		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	65	542	0	ENST00000078429.4:c.287C>T	p.Thr96Met	p.T96M	ENST00000078429	NM_002067.2	96	aCg/aTg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553462	106553462	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765744926		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	71	543	0	ENST00000369096.4:c.1427G>A	p.Arg476Gln	p.R476Q	ENST00000369096	NM_001198.3	476	cGg/cAg																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225582	26225582	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752115135		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			733	73	786	1	ENST00000360408.1:c.200C>T	p.Pro67Leu	p.P67L	ENST00000360408	NM_003532.2	67	cCg/cTg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441282	52441282	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1268089896		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	80	730	0	ENST00000460680.1:c.488G>A	p.Arg163Gln	p.R163Q	ENST00000460680	NM_004656.3	163	cGg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151833945	151833945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	90	489	0	ENST00000262189.6:c.14708C>T	p.Ala4903Val	p.A4903V	ENST00000262189	NM_170606.2	4903	gCt/gTt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099889	157099889	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	67	515	0	ENST00000346085.5:c.826G>C	p.Ala276Pro	p.A276P	ENST00000346085	NM_020732.3	276	Gcc/Ccc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52696199	52696199	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774655494		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	77	486	0	ENST00000394830.3:c.478G>A	p.Glu160Lys	p.E160K	ENST00000394830	NM_018313.4	160	Gaa/Aaa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164239	47164240	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	39	490	0	ENST00000409792.3:c.1886dup	p.Leu630AlafsTer3	p.L630Afs*3	ENST00000409792	NM_014159.6	629	aag/aaAg																																																																															
MED12	9968	MSKCC	GRCh37	X	70356197	70356197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	90	576	0	ENST00000374080.3:c.5092G>A	p.Ala1698Thr	p.A1698T	ENST00000374080		1698	Gca/Aca																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210782	2210784	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	66	631	0	ENST00000398665.3:c.1284_1286del	p.Lys428del	p.K428del	ENST00000398665	NM_032482.2	427	AAG/-																																																																															
RECQL	5965	MSKCC	GRCh37	12	21626571	21626571	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776939203		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	40	369	0	ENST00000421138.2:c.1361G>A	p.Arg454His	p.R454H	ENST00000421138		454	cGt/cAt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741439	145741439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374743591		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	50	659	0	ENST00000428558.2:c.1064G>A	p.Arg355Gln	p.R355Q	ENST00000428558	NM_004260.3	355	cGg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845364	151845364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	102	573	0	ENST00000262189.6:c.13648G>A	p.Val4550Met	p.V4550M	ENST00000262189	NM_170606.2	4550	Gtg/Atg																																																																															
AR	367	MSKCC	GRCh37	X	66765175	66765175	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	39	372	0	ENST00000374690.3:c.187C>T	p.Gln63Ter	p.Q63*	ENST00000374690	NM_000044.3	63	Cag/Tag																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514940	103514940	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1008091379		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	87	556	0	ENST00000355739.4:c.1441G>A	p.Val481Met	p.V481M	ENST00000355739	NM_000123.3	481	Gtg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55220358	55220358	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	54	348	0	ENST00000275493.2:c.747+1G>T		p.X249_splice	ENST00000275493	NM_005228.3	249																																																																																
MALT1	10892	MSKCC	GRCh37	18	56402550	56402550	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	47	334	0	ENST00000348428.3:c.1592A>C	p.Glu531Ala	p.E531A	ENST00000348428	NM_006785.3	531	gAa/gCa																																																																															
TAP1	6890	MSKCC	GRCh37	6	32820185	32820185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	81	544	0	ENST00000354258.4:c.873G>A	p.Met291Ile	p.M291I	ENST00000354258	NM_000593.5	291	atG/atA																																																																															
MED12	9968	MSKCC	GRCh37	X	70344990	70344990	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	51	497	0	ENST00000374080.3:c.2224del	p.Gln742ArgfsTer38	p.Q742Rfs*38	ENST00000374080		740	atC/at																																																																															
STAG2	10735	MSKCC	GRCh37	X	123227873	123227873	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1430304708		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	46	357	0	ENST00000218089.9:c.3584G>A	p.Arg1195His	p.R1195H	ENST00000218089	NM_001042749.1	1195	cGt/cAt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117365	115117365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	62	582	0	ENST00000257566.3:c.809C>T	p.Thr270Ile	p.T270I	ENST00000257566	NM_016569.3	270	aCa/aTa																																																																															
APC	324	MSKCC	GRCh37	5	112173648	112173648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	67	496	0	ENST00000257430.4:c.2357G>A	p.Arg786His	p.R786H	ENST00000257430	NM_000038.5	786	cGt/cAt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637512	47637512	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs267607689		P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	78	494	0	ENST00000233146.2:c.645+1G>A		p.X215_splice	ENST00000233146	NM_000251.2	215																																																																																
RET	5979	MSKCC	GRCh37	10	43609002	43609003	+	splice_acceptor_variant	Splice_Site	INS	-	-	G			P-0071745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	77	697	0	ENST00000355710.3:c.1763dup		p.X588_splice	ENST00000355710	NM_020975.4	588																																																																																
CSDE1	7812	MSKCC	GRCh37	1	115263216	115263216	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	50	425	0	ENST00000438362.2:c.2134A>G	p.Met712Val	p.M712V	ENST00000438362	NM_001242891.1	712	Atg/Gtg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660165	227660165	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1384083792		P-0071749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	213	599	0	ENST00000305123.5:c.3290G>A	p.Arg1097Gln	p.R1097Q	ENST00000305123	NM_005544.2	1097	cGg/cAg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247411	71247411	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756099573		P-0071749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	28	494	0	ENST00000318789.4:c.122C>T	p.Thr41Met	p.T41M	ENST00000318789	NM_032682.5	41	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0071749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	95	428	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579359	7579360	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAAACC			P-0071749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	173	568	0	ENST00000269305.4:c.322_327dup	p.Gly108_Phe109dup	p.G108_F109dup	ENST00000269305	NM_001126112.2	108	-/GGTTTC																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214627	5214627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	33	551	0	ENST00000357368.4:c.4439G>T	p.Trp1480Leu	p.W1480L	ENST00000357368	NM_002850.3	1480	tGg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0071750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	330	506	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	234	447	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	76	348	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593397	48593398	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGGCAA			P-0071750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	114	390	0	ENST00000342988.3:c.1152_1157dup	p.Lys385_Gly386dup	p.K385_G386dup	ENST00000342988	NM_005359.5	385	ata/atAGGCAAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0071770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	71	337	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0071770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	37	351	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0071770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	37	237	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	60	210	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627505	14627505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	78	264	0	ENST00000254322.2:c.565C>T	p.Arg189Trp	p.R189W	ENST00000254322	NM_006145.1	189	Cgg/Tgg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348284	89348285	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0071770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	8	389	0	ENST00000301030.4:c.4665_4666del	p.Pro1557IlefsTer83	p.P1557Ifs*83	ENST00000301030	NM_001256183.1	1555	gtAGcg/gtcg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983060	201983060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	194	436	0	ENST00000359651.3:c.909C>A	p.Phe303Leu	p.F303L	ENST00000359651		303	ttC/ttA																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114901028	114901028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	90	430	0	ENST00000543371.1:c.638C>T	p.Pro213Leu	p.P213L	ENST00000543371	NM_001198531.1	213	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	123	250	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0071776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	183	371	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0071776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	208	338	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
FYN	2534	MSKCC	GRCh37	6	112041025	112041025	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779126684		P-0071776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	181	344	0	ENST00000368678.4:c.230G>A	p.Arg77His	p.R77H	ENST00000368678		77	cGt/cAt																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023129	33023129	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	65	441	0	ENST00000300177.4:c.238G>T	p.Ala80Ser	p.A80S	ENST00000300177	NM_001191322.1	80	Gcc/Tcc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23614896	23614896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	76	358	0	ENST00000261584.4:c.3445G>A	p.Ala1149Thr	p.A1149T	ENST00000261584	NM_024675.3	1149	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112175349	112175349	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	83	354	0	ENST00000257430.4:c.4059del	p.Glu1353AspfsTer62	p.E1353Dfs*62	ENST00000257430	NM_000038.5	1353	gAa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0071782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	278	482	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112174276	112174276	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0071782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	210	363	0	ENST00000257430.4:c.2985C>A	p.Cys995Ter	p.C995*	ENST00000257430	NM_000038.5	995	tgC/tgA																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862740	9862740	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	60	380	0	ENST00000330684.3:c.2563G>T	p.Asp855Tyr	p.D855Y	ENST00000330684	NM_001134407.1	855	Gac/Tac																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411068	63411068	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	41	189	0	ENST00000330258.3:c.2099C>A	p.Pro700His	p.P700H	ENST00000330258	NM_152424.3	700	cCt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0071783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	185	505	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ALK	238	MSKCC	GRCh37	2	29451784	29451784	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772809305		P-0071783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	75	159	1	ENST00000389048.3:c.2781del	p.Cys928AlafsTer11	p.C928Afs*11	ENST00000389048	NM_004304.4	927	ggG/gg																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0071783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	129	382	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
KDR	3791	MSKCC	GRCh37	4	55976857	55976857	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151317075		P-0071783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	105	377	0	ENST00000263923.4:c.1055C>T	p.Ala352Val	p.A352V	ENST00000263923	NM_002253.2	352	gCg/gTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250865	153250865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	114	275	0	ENST00000281708.4:c.1195G>T	p.Asp399Tyr	p.D399Y	ENST00000281708	NM_033632.3	399	Gat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112137078	112137078	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0071783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	46	223	0	ENST00000257430.4:c.832C>T	p.Gln278Ter	p.Q278*	ENST00000257430	NM_000038.5	278	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0071784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	191	452	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0071784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	820	462	0	ENST00000275493.2:c.2303_2311dup	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
GAB1	2549	MSKCC	GRCh37	4	144380615	144380615	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	36	354	0	ENST00000262994.4:c.1663A>G	p.Arg555Gly	p.R555G	ENST00000262994	NM_002039.3	555	Agg/Ggg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549349	187549349	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	112	504	0	ENST00000441802.2:c.4769A>G	p.Asp1590Gly	p.D1590G	ENST00000441802	NM_005245.3	1590	gAc/gGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249016	55249016	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs746677478		P-0071784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	967	479	0	ENST00000275493.2:c.2314C>G	p.Pro772Ala	p.P772A	ENST00000275493	NM_005228.3	772	Ccc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0071791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			768	111	458	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175178	112175179	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0071791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	43	318	0	ENST00000257430.4:c.3888dup	p.Asp1297ArgfsTer4	p.D1297Rfs*4	ENST00000257430	NM_000038.5	1296	gca/gcAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	53	198	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ATM	472	MSKCC	GRCh37	11	108214065	108214074	+	frameshift_variant	Frame_Shift_Del	DEL	TTTCAGTGCC	TTTCAGTGCC	-	rs1300297318		P-0071795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	230	341	0	ENST00000278616.4:c.8395_8404del	p.Phe2799LysfsTer4	p.F2799Kfs*4	ENST00000278616	NM_000051.3	2795	gaTTTCAGTGCC/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0071795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	115	269	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347173	89347173	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778991139		P-0071795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			814	150	474	0	ENST00000301030.4:c.5777C>T	p.Pro1926Leu	p.P1926L	ENST00000301030	NM_001256183.1	1926	cCg/cTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222867	5222867	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1193352037		P-0071795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	149	419	0	ENST00000357368.4:c.2936G>A	p.Arg979Gln	p.R979Q	ENST00000357368	NM_002850.3	979	cGa/cAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735458	40735458	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1243407933		P-0071795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			880	109	479	0	ENST00000373198.4:c.3415C>T	p.Arg1139Trp	p.R1139W	ENST00000373198	NM_133170.3	1139	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112170647	112170647	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0071795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	107	294	0	ENST00000257430.4:c.1744-1G>A		p.X582_splice	ENST00000257430	NM_000038.5	582																																																																																
AXIN2	8313	MSKCC	GRCh37	17	63553922	63553922	+	splice_donor_variant	Splice_Site	DEL	A	A	-			P-0071795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			890	176	497	0	ENST00000307078.5:c.815+2del		p.X272_splice	ENST00000307078	NM_004655.3	272																																																																																
DNMT3A	1788	MSKCC	GRCh37	2	25470964	25470964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			889	183	542	0	ENST00000264709.3:c.797G>A	p.Gly266Glu	p.G266E	ENST00000264709	NM_175629.2	266	gGg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112175439	112175440	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0071795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	118	410	0	ENST00000257430.4:c.4149_4150del	p.Met1383IlefsTer2	p.M1383Ifs*2	ENST00000257430	NM_000038.5	1383	aTG/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786202962		P-0071861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	214	438	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0071861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	128	196	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0071862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	26	236	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2047370	2047370	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	25	163	0	ENST00000349721.2:c.932C>G	p.Ala311Gly	p.A311G	ENST00000349721	NM_003070.3	311	gCc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0071863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	122	299	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	89	199	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0071868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	112	209	2	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747342068		P-0071868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	160	291	3	ENST00000269305.4:c.394A>G	p.Lys132Glu	p.K132E	ENST00000269305	NM_001126112.2	132	Aag/Gag																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0071868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	62	206	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509060	106509060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	38	324	2	ENST00000359195.3:c.1054G>A	p.Val352Met	p.V352M	ENST00000359195	NM_002649.2	352	Gtg/Atg																																																																															
BRAF	673	MSKCC	GRCh37	7	140481417	140481417	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913348		P-0071868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	110	229	4	ENST00000288602.6:c.1391G>T	p.Gly464Val	p.G464V	ENST00000288602	NM_004333.4	464	gGa/gTa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355807	73355807	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1323428236		P-0071868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	32	239	1	ENST00000377767.4:c.164C>T	p.Pro55Leu	p.P55L	ENST00000377767	NM_014953.3	55	cCg/cTg																																																																															
KLF5	688	MSKCC	GRCh37	13	73636018	73636018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	131	286	0	ENST00000377687.4:c.281A>G	p.Lys94Arg	p.K94R	ENST00000377687	NM_001730.3	94	aAg/aGg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754247	57754247	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	65	282	3	ENST00000274289.3:c.604T>A	p.Leu202Met	p.L202M	ENST00000274289	NM_006622.3	202	Ttg/Atg																																																																															
CDK6	1021	MSKCC	GRCh37	7	92355020	92355020	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	91	285	1	ENST00000265734.4:c.457G>T	p.Val153Leu	p.V153L	ENST00000265734	NM_001259.6	153	Gtg/Ttg																																																																															
XIAP	331	MSKCC	GRCh37	X	123019715	123019715	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	76	321	2	ENST00000355640.3:c.203C>T	p.Ala68Val	p.A68V	ENST00000355640		68	gCa/gTa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100399	8100399	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs535492085		P-0071877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	28	486	0	ENST00000346208.3:c.373G>A	p.Gly125Ser	p.G125S	ENST00000346208		125	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0071877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	104	389	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0071877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	51	323	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166763	32166763	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761314959		P-0071877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	67	321	0	ENST00000375023.3:c.4475G>A	p.Arg1492Gln	p.R1492Q	ENST00000375023	NM_004557.3	1492	cGg/cAg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946433	2946433	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775862540		P-0071877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	58	327	0	ENST00000396946.4:c.3304G>A	p.Val1102Met	p.V1102M	ENST00000396946	NM_032415.4	1102	Gtg/Atg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911529	114911530	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0071877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	40	300	0	ENST00000543371.1:c.1049_1050dup	p.Lys351Ter	p.K351*	ENST00000543371	NM_001198531.1	349	-/AT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0071884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	13	215	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0071884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			777	80	444	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	32	278	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427554	427554	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			754	42	396	0	ENST00000399788.2:c.2615C>G	p.Ser872Cys	p.S872C	ENST00000399788	NM_001042603.1	872	tCc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0071885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	469	357	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72866503	72866503	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777239706		P-0071885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	58	230	0	ENST00000325599.8:c.760C>T	p.Arg254Ter	p.R254*	ENST00000325599	NM_018130.2	254	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	230	380	0	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126730	5126730	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1437629509		P-0071885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			78	30	269	0	ENST00000381652.3:c.3338G>A	p.Arg1113His	p.R1113H	ENST00000381652	NM_004972.3	1113	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173590	112173590	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			107	124	324	0	ENST00000257430.4:c.2299C>T	p.Gln767Ter	p.Q767*	ENST00000257430	NM_000038.5	767	Cag/Tag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864354	57864354	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368078339		P-0071885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	180	439	0	ENST00000228682.2:c.1831C>T	p.Arg611Trp	p.R611W	ENST00000228682	NM_005269.2	611	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175543	112175544	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0071885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	109	308	0	ENST00000257430.4:c.4253dup	p.Ser1419LysfsTer4	p.S1419Kfs*4	ENST00000257430	NM_000038.5	1418	ata/aTta																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134075	41134075	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			848	143	379	0	ENST00000379561.5:c.1553A>G	p.Asn518Ser	p.N518S	ENST00000379561	NM_002015.3	518	aAt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0071900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	163	796	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175857	24175859	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0071900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	109	676	0	ENST00000263121.7:c.1091_1093del	p.Lys364del	p.K364del	ENST00000263121	NM_003073.3	362	gAGAag/gag																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0071900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	95	614	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81381528	81381528	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776090604		P-0071900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	67	502	0	ENST00000222390.5:c.533G>A	p.Arg178Gln	p.R178Q	ENST00000222390	NM_000601.4	178	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0071900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	61	268	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138456718	138456718	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	11	184	0	ENST00000289153.2:c.632G>T	p.Ser211Ile	p.S211I	ENST00000289153	NM_006219.2	211	aGc/aTc																																																																															
STK19	8859	MSKCC	GRCh37	6	31948245	31948245	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	43	608	0	ENST00000375331.2:c.821G>C	p.Gly274Ala	p.G274A	ENST00000375331	NM_004197.1	274	gGa/gCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	18	292	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0071906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	83	456	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62321753	62321753	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	C			P-0071906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	32	422	0	ENST00000482936.1:c.2372G>C	p.Ser791Thr	p.S791T	ENST00000482936		791	aGt/aCt																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175295	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAAGATTGGAACTAGGTCAGCTGAAGATCCTGTGAGCGAAGTTCCAGCAGTGTCACAGCACCCTAGAACCAAATCCAG	GAAAAGATTGGAACTAGGTCAGCTGAAGATCCTGTGAGCGAAGTTCCAGCAGTGTCACAGCACCCTAGAACCAAATCCAG	-			P-0071906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	77	444	0	ENST00000257430.4:c.3925_4004del	p.Glu1309GlnfsTer6	p.E1309Qfs*6	ENST00000257430	NM_000038.5	1309	GAAAAGATTGGAACTAGGTCAGCTGAAGATCCTGTGAGCGAAGTTCCAGCAGTGTCACAGCACCCTAGAACCAAATCCAGc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0071922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	210	416	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0071922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	77	362	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
ALK	238	MSKCC	GRCh37	2	29606696	29606696	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769910087		P-0071922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	81	422	0	ENST00000389048.3:c.1184G>A	p.Arg395His	p.R395H	ENST00000389048	NM_004304.4	395	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	96	450	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																															
APC	324	MSKCC	GRCh37	5	112162803	112162803	+	splice_acceptor_variant	Splice_Site	DEL	A	A	-			P-0071922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	85	307	0	ENST00000257430.4:c.1409-2del		p.X470_splice	ENST00000257430	NM_000038.5	470																																																																																
SOX9	6662	MSKCC	GRCh37	17	70117737	70117738	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0071922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	113	568	0	ENST00000245479.2:c.206_207dup	p.Pro70SerfsTer41	p.P70Sfs*41	ENST00000245479	NM_000346.3	69	ttc/tTCtc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262445	16262445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	84	428	0	ENST00000375759.3:c.9710C>T	p.Pro3237Leu	p.P3237L	ENST00000375759	NM_015001.2	3237	cCa/cTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101099	27101099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	18	547	1	ENST00000324856.7:c.4381C>T	p.Arg1461Ter	p.R1461*	ENST00000324856	NM_006015.4	1461	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112176089	112176089	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	209	564	0	ENST00000257430.4:c.4798A>G	p.Lys1600Glu	p.K1600E	ENST00000257430	NM_000038.5	1600	Aaa/Gaa																																																																															
APC	324	MSKCC	GRCh37	5	112154970	112154971	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0071929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	148	528	0	ENST00000257430.4:c.1242dup	p.Ala415ArgfsTer4	p.A415Rfs*4	ENST00000257430	NM_000038.5	414	cgc/cgCc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0071932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	124	410	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0071932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	200	371	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0071932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	188	358	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89337296	89337296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	74	297	1	ENST00000301030.4:c.7735C>T	p.Arg2579Cys	p.R2579C	ENST00000301030	NM_001256183.1	2579	Cgc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385120	41385120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	98	422	0	ENST00000373198.4:c.841G>A	p.Ala281Thr	p.A281T	ENST00000373198	NM_133170.3	281	Gcg/Acg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0071934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	218	507	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0071934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	176	490	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89712017	89712017	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0071934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	12	299	0	ENST00000371953.3:c.634+1G>A		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																																
PTEN	5728	MSKCC	GRCh37	10	89720679	89720679	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs398123329		P-0071934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			38	33	97	0	ENST00000371953.3:c.830C>T	p.Thr277Ile	p.T277I	ENST00000371953	NM_000314.4	277	aCa/aTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0071934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	100	368	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21347168	21347168	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs935736801		P-0071934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	145	498	0	ENST00000215739.8:c.1235G>A	p.Arg412His	p.R412H	ENST00000215739	NM_006767.3	412	cGc/cAc																																																																															
JUN	3725	MSKCC	GRCh37	1	59247955	59247955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	234	580	0	ENST00000371222.2:c.788G>A	p.Arg263His	p.R263H	ENST00000371222	NM_002228.3	263	cGc/cAc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780063	9780063	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	49	545	0	ENST00000377346.4:c.1327C>G	p.Pro443Ala	p.P443A	ENST00000377346	NM_005026.3	443	Ccc/Gcc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4094450	4094450	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0071934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	128	339	0	ENST00000262948.5:c.1092+1G>A		p.X364_splice	ENST00000262948	NM_030662.3	364																																																																																
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750600586		P-0071943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	170	347	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0071943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	87	312	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0071943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	25	293	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046092	180046092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	69	240	0	ENST00000261937.6:c.2779G>A	p.Val927Met	p.V927M	ENST00000261937	NM_182925.4	927	Gtg/Atg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041238	29041238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	113	335	0	ENST00000282397.4:c.190C>T	p.Pro64Ser	p.P64S	ENST00000282397	NM_002019.4	64	Cct/Tct																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038765	47038790	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCCACTGGGTGGCCGGGAGCTGAG	CTGCCACTGGGTGGCCGGGAGCTGAG	-			P-0071943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	180	157	0	ENST00000329236.7:c.542_567del	p.Leu181ProfsTer34	p.L181Pfs*34	ENST00000329236	NM_001204466.1	181	CTGCCACTGGGTGGCCGGGAGCTGAGc/c																																																																															
FYN	2534	MSKCC	GRCh37	6	111983100	111983100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			750	133	313	1	ENST00000368678.4:c.1447C>T	p.Pro483Ser	p.P483S	ENST00000368678		483	Ccc/Tcc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267237	41267237	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1233296947		P-0071943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	110	333	0	ENST00000349496.5:c.821G>A	p.Arg274His	p.R274H	ENST00000349496	NM_001904.3	274	cGt/cAt																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281692	49281692	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	36	338	0	ENST00000282018.3:c.739A>G	p.Thr247Ala	p.T247A	ENST00000282018	NM_020377.2	247	Acc/Gcc																																																																															
POLE	5426	MSKCC	GRCh37	12	133236062	133236062	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	84	323	0	ENST00000320574.5:c.3094C>G	p.Leu1032Val	p.L1032V	ENST00000320574	NM_006231.2	1032	Ctc/Gtc																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858067	152858067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	259	157	0	ENST00000406277.2:c.548G>A	p.Arg183His	p.R183H	ENST00000406277	NM_152274.4	183	cGc/cAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396953	396953	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	63	363	0	ENST00000262320.3:c.73G>T	p.Val25Leu	p.V25L	ENST00000262320	NM_003502.3	25	Gtg/Ttg																																																																															
APC	324	MSKCC	GRCh37	5	112174113	112174113	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	131	481	0	ENST00000257430.4:c.2825del	p.Asn942IlefsTer13	p.N942Ifs*13	ENST00000257430	NM_000038.5	941	gAa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	161	387	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4101040	4101040	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs999810842		P-0071954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	110	319	0	ENST00000262948.5:c.682G>A	p.Val228Met	p.V228M	ENST00000262948	NM_030662.3	228	Gtg/Atg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711353	114711353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	82	361	0	ENST00000543371.1:c.368C>T	p.Pro123Leu	p.P123L	ENST00000543371	NM_001198531.1	123	cCc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112175393	112175394	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0071954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	132	440	0	ENST00000257430.4:c.4104_4105del	p.Pro1369GlnfsTer5	p.P1369Qfs*5	ENST00000257430	NM_000038.5	1368	ACa/a																																																																															
ATR	545	MSKCC	GRCh37	3	142226826	142226826	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	125	398	0	ENST00000350721.4:c.4978T>C	p.Ser1660Pro	p.S1660P	ENST00000350721	NM_001184.3	1660	Tca/Cca																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162979	47162979	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	115	437	0	ENST00000409792.3:c.3147del	p.Ser1049ArgfsTer72	p.S1049Rfs*72	ENST00000409792	NM_014159.6	1049	agT/ag																																																																															
AKT2	208	MSKCC	GRCh37	19	40741870	40741870	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	200	586	0	ENST00000392038.2:c.1102del	p.Arg368AlafsTer207	p.R368Afs*207	ENST00000392038	NM_001626.4	368	Cgc/gc																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0071965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	66	387	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0071965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	74	363	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0071965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			809	44	405	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0071971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	43	347	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0071971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	25	445	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0071971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	48	196	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2115967	2115967	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs281875189		P-0071971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	46	447	0	ENST00000349721.2:c.3602C>T	p.Ala1201Val	p.A1201V	ENST00000349721	NM_003070.3	1201	gCg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788651	3788651	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	21	379	0	ENST00000262367.5:c.4303G>T	p.Asp1435Tyr	p.D1435Y	ENST00000262367	NM_004380.2	1435	Gat/Tat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604656	48604656	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	43	400	0	ENST00000342988.3:c.1478A>T	p.Asp493Val	p.D493V	ENST00000342988	NM_005359.5	493	gAt/gTt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264119	46264119	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1250026993		P-0071971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	25	381	0	ENST00000371998.3:c.1166C>T	p.Pro389Leu	p.P389L	ENST00000371998		389	cCa/cTa																																																																															
ATRX	546	MSKCC	GRCh37	X	76944369	76944369	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs398123425		P-0071971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	25	167	0	ENST00000373344.5:c.536A>G	p.Asn179Ser	p.N179S	ENST00000373344	NM_000489.3	179	aAt/aGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0071971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	21	266	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175737	112175738	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0071971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	74	521	0	ENST00000257430.4:c.4448dup	p.Asp1484ArgfsTer3	p.D1484Rfs*3	ENST00000257430	NM_000038.5	1482	-/C																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396591	30396591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	37	331	0	ENST00000331968.5:c.128C>T	p.Ala43Val	p.A43V	ENST00000331968	NM_002742.2	43	gCg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777846	3777846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	35	556	0	ENST00000262367.5:c.7202G>A	p.Gly2401Glu	p.G2401E	ENST00000262367	NM_004380.2	2401	gGg/gAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244220	153244221	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0071971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	35	468	0	ENST00000281708.4:c.1936_1937del	p.Val646LysfsTer9	p.V646Kfs*9	ENST00000281708	NM_033632.3	646	GTa/a																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0071983-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	144	186	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045190	47045190	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0071983-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	247	215	0	ENST00000329236.7:c.2196+1G>T		p.X732_splice	ENST00000329236	NM_001204466.1	732																																																																																
APC	324	MSKCC	GRCh37	5	112155042	112155042	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0071983-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	85	342	0	ENST00000257430.4:c.1312+1G>T		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36213516	36213516	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770865375		P-0071983-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	211	463	0	ENST00000222270.7:c.2618G>A	p.Arg873His	p.R873H	ENST00000222270	NM_014727.1	873	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071983-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	201	275	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KLF5	688	MSKCC	GRCh37	13	73636645	73636645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071983-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			982	474	498	0	ENST00000377687.4:c.908C>T	p.Ser303Leu	p.S303L	ENST00000377687	NM_001730.3	303	tCa/tTa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455042	50455042	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0071983-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	73	376	0	ENST00000331340.3:c.590-1G>T		p.X197_splice	ENST00000331340	NM_006060.4	197																																																																																
SETDB1	9869	MSKCC	GRCh37	1	150923280	150923280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071983-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			843	152	454	0	ENST00000271640.5:c.1927C>T	p.Arg643Cys	p.R643C	ENST00000271640	NM_001145415.1	643	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0072002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			39	51	228	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0072002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	136	503	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0072002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	85	601	1	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551538	150551538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	188	591	2	ENST00000369026.2:c.469G>T	p.Asp157Tyr	p.D157Y	ENST00000369026	NM_021960.4	157	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0072002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	33	317	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERG	2078	MSKCC	GRCh37	21	39755800	39755800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	94	492	0	ENST00000288319.7:c.965C>T	p.Ser322Leu	p.S322L	ENST00000288319	NM_182918.3	322	tCg/tTg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680407	30680407	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753023149		P-0072002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	61	605	0	ENST00000376406.3:c.1312C>T	p.Arg438Cys	p.R438C	ENST00000376406	NM_014641.2	438	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0072003-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	189	411	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072003-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	59	371	0	ENST00000263121.7:c.1130G>T	p.Arg377Leu	p.R377L	ENST00000263121	NM_003073.3	377	cGt/cTt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957317	1957419	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	GTTTATAAGTTAAGGCTGTAATAAGTGTAGACTGTGAAGCACTGAATCTGGGCTGAGCCATAGCAGACAGGCTAAGCCTGGCCGCCTCGCCCTCCTCTTGCAG	GTTTATAAGTTAAGGCTGTAATAAGTGTAGACTGTGAAGCACTGAATCTGGGCTGAGCCATAGCAGACAGGCTAAGCCTGGCCGCCTCGCCCTCCTCTTGCAG	-			P-0072003-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			44	70	189	0	ENST00000382895.3:c.2519-102_2519del		p.X840_splice	ENST00000382895	NM_133330.2	840																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66361132	66361132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072003-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	74	437	0	ENST00000273854.3:c.1040C>A	p.Ser347Tyr	p.S347Y	ENST00000273854	NM_004439.5	347	tCt/tAt																																																																															
ATM	472	MSKCC	GRCh37	11	108139213	108139213	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0072003-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			56	264	434	0	ENST00000278616.4:c.2715T>A	p.Cys905Ter	p.C905*	ENST00000278616	NM_000051.3	905	tgT/tgA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0072021-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	34	268	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934573		P-0072021-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	180	330	0	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072021-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	162	341	0	ENST00000257430.4:c.4063del	p.Ser1355LeufsTer60	p.S1355Lfs*60	ENST00000257430	NM_000038.5	1354	Ttt/tt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959240	2959240	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148354898		P-0072021-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	100	336	0	ENST00000396946.4:c.2276G>A	p.Arg759Gln	p.R759Q	ENST00000396946	NM_032415.4	759	cGg/cAg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939086	36939086	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372288734		P-0072021-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	120	411	0	ENST00000361632.4:c.623C>T	p.Ala208Val	p.A208V	ENST00000361632		208	gCg/gTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0072026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	323	313	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519995		P-0072026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	366	331	0	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884881	134884881	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1174327737		P-0072026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	196	377	0	ENST00000398015.3:c.1657G>A	p.Val553Ile	p.V553I	ENST00000398015	NM_004441.4	553	Gtt/Att																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528702	157528702	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs530084903		P-0072026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1170	75	438	1	ENST00000346085.5:c.6427G>A	p.Ala2143Thr	p.A2143T	ENST00000346085	NM_020732.3	2143	Gca/Aca																																																																															
TAP1	6890	MSKCC	GRCh37	6	32819912	32819912	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779607865		P-0072026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			805	105	360	0	ENST00000354258.4:c.998C>T	p.Thr333Met	p.T333M	ENST00000354258	NM_000593.5	333	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830531	72830531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	94	387	0	ENST00000268489.5:c.6050G>A	p.Arg2017Lys	p.R2017K	ENST00000268489	NM_006885.3	2017	aGg/aAg																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690456	33690456	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770564755		P-0072026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	91	407	1	ENST00000308377.4:c.371G>A	p.Arg124His	p.R124H	ENST00000308377	NM_152270.3	124	cGc/cAc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719686	190719686	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	89	309	0	ENST00000441310.2:c.1688A>G	p.Tyr563Cys	p.Y563C	ENST00000441310	NM_000534.4	563	tAt/tGt																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551952	150551952	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			373	126	481	0	ENST00000369026.2:c.55del	p.Ala19ProfsTer30	p.A19Pfs*30	ENST00000369026	NM_021960.4	19	Gcc/cc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258976	16258976	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			426	140	580	0	ENST00000375759.3:c.6241C>T	p.Arg2081Ter	p.R2081*	ENST00000375759	NM_015001.2	2081	Cga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262680	16262680	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			377	111	460	2	ENST00000375759.3:c.9950del	p.Pro3317ArgfsTer83	p.P3317Rfs*83	ENST00000375759	NM_015001.2	3315	caC/ca																																																																															
PARP1	142	MSKCC	GRCh37	1	226567646	226567647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1159330096		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			421	98	601	0	ENST00000366794.5:c.1519dup	p.Ser507LysfsTer14	p.S507Kfs*14	ENST00000366794	NM_001618.3	507	agc/aAgc																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231487255	231487256	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs752960031		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			419	124	541	0	ENST00000295050.7:c.663dup	p.Gly222ArgfsTer18	p.G222Rfs*18	ENST00000295050	NM_032018.5	219	tca/tcAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099103	27099103	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			496	177	606	0	ENST00000324856.7:c.3524del	p.Pro1175HisfsTer5	p.P1175Hfs*5	ENST00000324856	NM_006015.4	1173	atC/at																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51436084	51436084	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			346	143	465	1	ENST00000262662.1:c.49del	p.Asp17ThrfsTer2	p.D17Tfs*2	ENST00000262662		15	aGg/ag																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073425	8073426	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs775750077		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			373	116	498	0	ENST00000377482.5:c.1233dup	p.Arg412Ter	p.R412*	ENST00000377482	NM_018948.3	411	-/T																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			349	123	514	3	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																															
YAP1	10413	MSKCC	GRCh37	11	102076740	102076740	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			420	113	491	1	ENST00000282441.5:c.919C>T	p.Arg307Ter	p.R307*	ENST00000282441	NM_001130145.2	307	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			233	81	412	4	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																															
ATM	472	MSKCC	GRCh37	11	108175510	108175510	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			315	110	394	2	ENST00000278616.4:c.5609del	p.Phe1870SerfsTer47	p.F1870Sfs*47	ENST00000278616	NM_000051.3	1869	Ttt/tt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343660	118343660	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			449	128	607	1	ENST00000534358.1:c.1790del	p.Leu597CysfsTer26	p.L597Cfs*26	ENST00000534358	NM_005933.3	596	Ttt/tt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376815	118376815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			436	146	519	0	ENST00000534358.1:c.10208C>T	p.Pro3403Leu	p.P3403L	ENST00000534358	NM_005933.3	3403	cCg/cTg																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594883	47594883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780075355		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	125	625	1	ENST00000395288.2:c.1156del	p.Glu386ArgfsTer27	p.E386Rfs*27	ENST00000395288	NM_016506.5	386	Gag/ag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			198	50	221	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	131	506	2	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112154	115112154	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			370	91	543	0	ENST00000257566.3:c.1586del	p.Gly529AlafsTer103	p.G529Afs*103	ENST00000257566	NM_016569.3	529	gGc/gc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	142	498	6	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																															
POLE	5426	MSKCC	GRCh37	12	133202283	133202283	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764457707		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	119	531	1	ENST00000320574.5:c.6605C>T	p.Thr2202Met	p.T2202M	ENST00000320574	NM_006231.2	2202	aCg/aTg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			395	72	446	3	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			402	134	525	6	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	442811	442811	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			376	97	481	0	ENST00000399788.2:c.1495del	p.Glu499SerfsTer19	p.E499Sfs*19	ENST00000399788	NM_001042603.1	499	Gag/ag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			395	149	651	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434959	49434959	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			426	128	570	0	ENST00000301067.7:c.6594del	p.Tyr2199IlefsTer65	p.Y2199Ifs*65	ENST00000301067	NM_003482.3	2198	ccC/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			387	116	534	2	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865315	57865316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs747342182		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			378	121	513	0	ENST00000228682.2:c.2798dup	p.Ser934PhefsTer4	p.S934Ffs*4	ENST00000228682	NM_005269.2	931	ctg/ctGg																																																																															
CDK4	1019	MSKCC	GRCh37	12	58143020	58143020	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144657355		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			456	143	562	1	ENST00000257904.6:c.764G>A	p.Arg255His	p.R255H	ENST00000257904	NM_000075.3	255	cGc/cAc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524568	103524568	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			433	85	394	0	ENST00000355739.4:c.2705del	p.Asn902IlefsTer4	p.N902Ifs*4	ENST00000355739	NM_000123.3	900	cAa/ca																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			283	283	444	6	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435263	110435263	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			515	123	647	2	ENST00000375856.3:c.3138del	p.Ala1047ProfsTer59	p.A1047Pfs*59	ENST00000375856	NM_003749.2	1046	ccC/cc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26970431	26970431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			285	43	330	0	ENST00000381527.3:c.800G>A	p.Trp267Ter	p.W267*	ENST00000381527	NM_001260.1	267	tGg/tAg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32890628	32890628	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			364	82	361	0	ENST00000380152.3:c.36del	p.Phe12LeufsTer13	p.F12Lfs*13	ENST00000380152		11	Ttt/tt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			354	71	450	1	ENST00000380152.3:c.5351del	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133898	41133898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			497	130	508	0	ENST00000379561.5:c.1730del	p.Gly577AlafsTer5	p.G577Afs*5	ENST00000379561	NM_002015.3	577	gGc/gc																																																																															
RB1	5925	MSKCC	GRCh37	13	48955464	48955465	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			311	59	359	1	ENST00000267163.4:c.1585dup	p.Tyr529LeufsTer26	p.Y529Lfs*26	ENST00000267163	NM_000321.2	527	gat/gaTt																																																																															
USP8	9101	MSKCC	GRCh37	15	50773880	50773880	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			385	119	539	0	ENST00000307179.4:c.1427del	p.Asn476ThrfsTer19	p.N476Tfs*19	ENST00000307179		474	gAa/ga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678391	88678391	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			440	31	484	1	ENST00000360948.2:c.1145del	p.Asn382ThrfsTer32	p.N382Tfs*32	ENST00000360948	NM_001012338.2	382	aAc/ac																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631917	90631918	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs780120934		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			422	118	533	1	ENST00000330062.3:c.435dup	p.Thr146AspfsTer126	p.T146Dfs*126	ENST00000330062	NM_002168.2	145	-/G																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			375	131	570	6	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99442808	99442809	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	106	469	0	ENST00000268035.6:c.1211dup	p.Asn404LysfsTer66	p.N404Kfs*66	ENST00000268035	NM_000875.3	402	cta/ctAa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500476	99500476	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			396	98	559	0	ENST00000268035.6:c.3913del	p.Leu1305TrpfsTer45	p.L1305Wfs*45	ENST00000268035	NM_000875.3	1303	gtC/gt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639398	3639398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs748691881		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			479	72	564	0	ENST00000294008.3:c.4241del	p.Pro1414HisfsTer36	p.P1414Hfs*36	ENST00000294008	NM_032444.2	1414	cCa/ca																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781421	3781421	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			418	124	536	0	ENST00000262367.5:c.4944del	p.Ile1649SerfsTer95	p.I1649Sfs*95	ENST00000262367	NM_004380.2	1648	ccC/cc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788609	3788609	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs945398646		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			365	95	391	0	ENST00000262367.5:c.4345G>A	p.Val1449Ile	p.V1449I	ENST00000262367	NM_004380.2	1449	Gtt/Att																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807363	3807364	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			334	88	359	0	ENST00000262367.5:c.3623dup	p.Gln1209ThrfsTer25	p.Q1209Tfs*25	ENST00000262367	NM_004380.2	1208	cca/ccCa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831936	72831936	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181722888		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			469	35	538	0	ENST00000268489.5:c.4645G>A	p.Val1549Ile	p.V1549I	ENST00000268489	NM_006885.3	1549	Gtc/Atc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993832	72993832	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	85	530	1	ENST00000268489.5:c.213del	p.Ser72ProfsTer37	p.S72Pfs*37	ENST00000268489	NM_006885.3	71	ccC/cc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89811418	89811418	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780078373		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	139	499	0	ENST00000389301.3:c.3575C>T	p.Pro1192Leu	p.P1192L	ENST00000389301	NM_000135.2	1192	cCg/cTg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11924240	11924240	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1462414385		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			281	87	451	2	ENST00000353533.5:c.41del	p.Gly14AlafsTer11	p.G14Afs*11	ENST00000353533	NM_003010.3	13	Ggg/gg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686900	37686901	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs772711685		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	82	402	1	ENST00000447079.4:c.3810dup	p.Gly1271ArgfsTer13	p.G1271Rfs*13	ENST00000447079	NM_015083.1	1268	-/C																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	133	419	2	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41247864	41247865	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T	rs80357537		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			265	70	349	0	ENST00000357654.3:c.668dup	p.Ala224GlyfsTer4	p.A224Gfs*4	ENST00000357654	NM_007294.3	223	aag/aaAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435162	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			445	161	637	0	ENST00000407977.2:c.1975_1976del	p.Gly659SerfsTer87	p.G659Sfs*87	ENST00000407977		659	GGt/t																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	226	523	0	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761147	59761147	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			325	114	489	1	ENST00000259008.2:c.3260del	p.Asn1087IlefsTer21	p.N1087Ifs*21	ENST00000259008	NM_032043.2	1087	aAt/at																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59861713	59861713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			342	116	416	0	ENST00000259008.2:c.1546G>A	p.Val516Ile	p.V516I	ENST00000259008	NM_032043.2	516	Gta/Ata																																																																															
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			489	30	500	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576870	7576870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs876659384		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			506	129	617	0	ENST00000269305.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000269305	NM_001126112.2	326	Gaa/Taa																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			362	165	562	1	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250962	10250962	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772419584		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			332	97	398	0	ENST00000340748.4:c.3518C>T	p.Ala1173Val	p.A1173V	ENST00000340748		1173	gCg/gTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1219345	1219346	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-	rs587782424		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			385	147	459	0	ENST00000326873.7:c.402_403del	p.Cys134TrpfsTer28	p.C134Wfs*28	ENST00000326873	NM_000455.4	133	GTg/g																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626859	14626860	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			453	115	555	0	ENST00000254322.2:c.915dup	p.Lys306GlnfsTer12	p.K306Qfs*12	ENST00000254322	NM_006145.1	305	-/C																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627722	14627722	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			427	168	599	0	ENST00000254322.2:c.348del	p.Phe116LeufsTer29	p.F116Lfs*29	ENST00000254322	NM_006145.1	116	ttT/tt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272337	15272337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs776990686		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			376	145	576	5	ENST00000263388.2:c.6102del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2034	ccC/cc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615698	1615698	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			416	154	639	1	ENST00000344749.5:c.1573del	p.Arg525GlyfsTer18	p.R525Gfs*18	ENST00000344749	NM_001136139.2	525	Cgg/gg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619792	1619792	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			430	137	532	0	ENST00000344749.5:c.1154del	p.Gly385ValfsTer9	p.G385Vfs*9	ENST00000344749	NM_001136139.2	385	gGt/gt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			449	122	587	1	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
CIC	23152	MSKCC	GRCh37	19	42793116	42793117	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			426	114	548	0	ENST00000575354.2:c.1012dup	p.Ala338GlyfsTer69	p.A338Gfs*69	ENST00000575354	NM_015125.3	336	-/G																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731545	47731545	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			328	64	425	0	ENST00000449228.1:c.247del	p.Arg83AlafsTer146	p.R83Afs*146	ENST00000449228	NM_001127240.2	83	Cgc/gc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274348	5274348	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			303	109	432	0	ENST00000357368.4:c.99del	p.Arg34GlyfsTer31	p.R34Gfs*31	ENST00000357368	NM_002850.3	33	ccC/cc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082313	16082314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs780080562		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	96	487	0	ENST00000281043.3:c.134dup	p.Glu47GlyfsTer8	p.E47Gfs*8	ENST00000281043	NM_005378.4	43	acc/aCcc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190682831	190682831	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	67	391	0	ENST00000441310.2:c.512del	p.Lys171ArgfsTer7	p.K171Rfs*7	ENST00000441310	NM_000534.4	169	atA/at																																																																															
CASP8	841	MSKCC	GRCh37	2	202131239	202131240	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	107	515	0	ENST00000358485.4:c.211dup	p.Glu71GlyfsTer6	p.E71Gfs*6	ENST00000358485	NM_001080125.1	69	-/G																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736165	204736166	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			385	115	472	0	ENST00000302823.3:c.529dup	p.Tyr177LeufsTer2	p.Y177Lfs*2	ENST00000302823	NM_005214.4	174	-/T																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913500		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			322	108	510	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116263	209116263	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			306	90	413	3	ENST00000345146.2:c.13del	p.Ile5SerfsTer7	p.I5Sfs*7	ENST00000345146	NM_005896.2	5	Atc/tc																																																																															
BARD1	580	MSKCC	GRCh37	2	215610468	215610468	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			273	67	403	0	ENST00000260947.4:c.1788del	p.Lys596AsnfsTer9	p.K596Nfs*9	ENST00000260947	NM_000465.2	596	aaA/aa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662847	227662847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			300	129	410	0	ENST00000305123.5:c.608C>T	p.Ala203Val	p.A203V	ENST00000305123	NM_005544.2	203	gCc/gTc																																																																															
ALK	238	MSKCC	GRCh37	2	29451843	29451843	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			233	60	299	0	ENST00000389048.3:c.2722del	p.Gln908ArgfsTer3	p.Q908Rfs*3	ENST00000389048	NM_004304.4	908	Cag/ag																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46587791	46587791	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			310	105	411	1	ENST00000263734.3:c.475del	p.Ser159AlafsTer12	p.S159Afs*12	ENST00000263734	NM_001430.4	157	Aaa/aa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47639588	47639588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			220	93	364	0	ENST00000233146.2:c.687del	p.Ala230LeufsTer16	p.A230Lfs*16	ENST00000233146	NM_000251.2	227	agA/ag																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025857	48025857	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1472949451		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			390	113	501	0	ENST00000234420.5:c.741del	p.Lys247AsnfsTer32	p.K247Nfs*32	ENST00000234420	NM_000179.2	245	atA/at																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	73	602	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42852427	42852427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	120	509	0	ENST00000398585.3:c.659C>T	p.Ala220Val	p.A220V	ENST00000398585	NM_001135099.1	220	gCg/gTg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24134056	24134057	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			435	117	500	0	ENST00000263121.7:c.214dup	p.Thr72AsnfsTer4	p.T72Nfs*4	ENST00000263121	NM_003073.3	69	-/A																																																																															
NF2	4771	MSKCC	GRCh37	22	30038260	30038260	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1185977513		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	122	422	0	ENST00000338641.4:c.433G>A	p.Ala145Thr	p.A145T	ENST00000338641	NM_000268.3	145	Gcc/Acc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664989	138664989	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			223	73	340	0	ENST00000330315.3:c.576del	p.Lys193SerfsTer78	p.K193Sfs*78	ENST00000330315	NM_023067.3	192	ccC/cc																																																																															
ATR	545	MSKCC	GRCh37	3	142261555	142261555	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			277	80	415	1	ENST00000350721.4:c.3402del	p.Phe1134LeufsTer6	p.F1134Lfs*6	ENST00000350721	NM_001184.3	1134	ttT/tt																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			352	82	437	1	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191049	185191049	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			399	144	620	1	ENST00000265026.3:c.1934del	p.Pro645LeufsTer19	p.P645Lfs*19	ENST00000265026	NM_004721.4	644	Ccc/cc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			282	193	485	9	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713424	30713425	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			435	130	597	0	ENST00000359013.4:c.828dup	p.Lys277GlufsTer6	p.K277Efs*6	ENST00000359013	NM_001024847.2	275	gtg/gtGg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070349	37070349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1220422495		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	143	481	0	ENST00000231790.2:c.1489del	p.Arg497GlyfsTer11	p.R497Gfs*11	ENST00000231790	NM_000249.3	495	aCc/ac																																																																															
SETD2	29072	MSKCC	GRCh37	3	47143009	47143010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			281	61	300	0	ENST00000409792.3:c.4952_4953dup	p.Thr1652LeufsTer12	p.T1652Lfs*12	ENST00000409792	NM_014159.6	1651	-/TT																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940112	49940112	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs767239578		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	117	585	0	ENST00000296474.3:c.931del	p.Ala311ProfsTer27	p.A311Pfs*27	ENST00000296474	NM_002447.2	311	Gcc/cc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			550	55	626	1	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			261	65	337	0	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			283	115	440	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			434	129	553	3	ENST00000382895.3:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382895	NM_133330.2	1341	Ccc/cc																																																																															
APC	324	MSKCC	GRCh37	5	112178033	112178033	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs773874693		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			348	147	444	2	ENST00000257430.4:c.6747del	p.Gly2250AlafsTer29	p.G2250Afs*29	ENST00000257430	NM_000038.5	2248	Aaa/aa																																																																															
TERT	7015	MSKCC	GRCh37	5	1294672	1294672	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			292	97	455	2	ENST00000310581.5:c.329del	p.Gly110AlafsTer18	p.G110Afs*18	ENST00000310581	NM_198253.2	110	gGc/gc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294903	1294903	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1038954321		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			260	99	396	0	ENST00000310581.5:c.202G>T	p.Ala68Ser	p.A68S	ENST00000310581	NM_198253.2	68	Gcc/Tcc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721759	176721759	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768074196		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	122	601	0	ENST00000439151.2:c.7390C>T	p.Arg2464Cys	p.R2464C	ENST00000439151	NM_022455.4	2464	Cgc/Tgc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053023	180053023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			405	131	611	0	ENST00000261937.6:c.1267del	p.Gln423ArgfsTer70	p.Q423Rfs*70	ENST00000261937	NM_182925.4	423	Cag/ag																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874637	35874637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			307	85	393	5	ENST00000303115.3:c.799del	p.Arg267GlyfsTer28	p.R267Gfs*28	ENST00000303115	NM_002185.3	265	Aaa/aa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	121	580	9	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753180	57753180	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			340	126	563	1	ENST00000274289.3:c.836del	p.Pro279HisfsTer14	p.P279Hfs*14	ENST00000274289	NM_006622.3	279	cCa/ca																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			324	71	405	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
MSH3	4437	MSKCC	GRCh37	5	80064779	80064780	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	60	435	0	ENST00000265081.6:c.2216dup	p.Asn739LysfsTer29	p.N739Kfs*29	ENST00000265081	NM_002439.4	737	cta/ctAa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564530	86564530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			445	150	578	0	ENST00000274376.6:c.266del	p.Gly89GlufsTer7	p.G89Efs*7	ENST00000274376	NM_002890.2	88	Ggg/gg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553281	106553281	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			435	138	540	0	ENST00000369096.4:c.1251del	p.Tyr418ThrfsTer3	p.Y418Tfs*3	ENST00000369096	NM_001198.3	416	Ccc/cc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200285	138200285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374368025		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	158	547	0	ENST00000237289.4:c.1703C>T	p.Ser568Leu	p.S568L	ENST00000237289	NM_001270507.1	568	tCg/tTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100210	157100210	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			243	70	401	0	ENST00000346085.5:c.1151del	p.Gly384AlafsTer46	p.G384Afs*46	ENST00000346085	NM_020732.3	383	Ggg/gg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675871	30675872	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			416	142	567	0	ENST00000376406.3:c.2484_2485del	p.Gly829AlafsTer7	p.G829Afs*7	ENST00000376406	NM_014641.2	828	agAGgg/aggg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798457	32798457	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	131	518	0	ENST00000374899.4:c.1399del	p.Val467LeufsTer2	p.V467Lfs*2	ENST00000374899	NM_018833.2	467	Gtt/tt																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793677	89793677	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	90	480	2	ENST00000336032.3:c.752del	p.Lys251SerfsTer14	p.K251Sfs*14	ENST00000336032	NM_006813.2	249	gAa/ga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			276	82	402	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148515025	148515025	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			482	58	497	0	ENST00000320356.2:c.1184del	p.Gly395GlufsTer29	p.G395Efs*29	ENST00000320356	NM_004456.4	395	gGa/ga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151848667	151848667	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			272	111	379	0	ENST00000262189.6:c.12527-1G>T		p.X4176_splice	ENST00000262189	NM_170606.2	4176																																																																																
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			262	113	392	4	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			413	66	519	1	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742041	145742041	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			377	120	511	1	ENST00000428558.2:c.462del	p.Val155SerfsTer25	p.V155Sfs*25	ENST00000428558	NM_004260.3	154	aaA/aa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146945	38146945	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	109	504	0	ENST00000317025.8:c.3197del	p.Asn1066ThrfsTer16	p.N1066Tfs*16	ENST00000317025	NM_023034.1	1066	aAc/ac																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205092	38205092	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			293	50	430	0	ENST00000317025.8:c.598del	p.Ser200AlafsTer20	p.S200Afs*20	ENST00000317025	NM_023034.1	200	Agc/gc																																																																															
LYN	4067	MSKCC	GRCh37	8	56863053	56863054	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	75	414	0	ENST00000519728.1:c.327dup	p.Glu110ArgfsTer40	p.E110Rfs*40	ENST00000519728	NM_002350.3	107	aca/acAa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968138	68968138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	72	404	0	ENST00000288368.4:c.1167G>A	p.Met389Ile	p.M389I	ENST00000288368	NM_024870.2	389	atG/atA																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	88	381	1	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137321001	137321001	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1343863109		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			330	133	511	0	ENST00000481739.1:c.958G>A	p.Val320Met	p.V320M	ENST00000481739	NM_002957.4	320	Gtg/Atg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2060958	2060960	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs766734761		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			471	141	575	0	ENST00000349721.2:c.1673_1675del	p.Lys558del	p.K558del	ENST00000349721	NM_003070.3	555	gAGAag/gag																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2181665	2181665	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			227	70	326	0	ENST00000349721.2:c.4354del	p.Ile1452Ter	p.I1452*	ENST00000349721	NM_003070.3	1450	Aaa/aa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970951	21970951	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	122	555	2	ENST00000304494.5:c.407del	p.Gly136AlafsTer10	p.G136Afs*10	ENST00000304494	NM_000077.4	136	gGc/gc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069060	5069060	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			261	82	418	0	ENST00000381652.3:c.1370del	p.Asn457MetfsTer22	p.N457Mfs*22	ENST00000381652	NM_004972.3	455	acA/ac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923087	39923087	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			149	121	250	0	ENST00000378444.4:c.3621del	p.Lys1207AsnfsTer31	p.K1207Nfs*31	ENST00000378444	NM_001123385.1	1207	aaA/aa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934127	39934127	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			151	153	248	0	ENST00000378444.4:c.472del	p.Ser158ValfsTer3	p.S158Vfs*3	ENST00000378444	NM_001123385.1	158	Agt/gt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030658	47030658	+	intron_variant	Intron	SNP	G	G	A	rs782679832		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			90	85	161	0	ENST00000329236.7:c.201+1761G>A		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			174	133	348	1	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150935514	150935514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			422	155	508	0	ENST00000271640.5:c.3356C>T	p.Thr1119Ile	p.T1119I	ENST00000271640	NM_001145415.1	1119	aCt/aTt																																																																															
CDC42	998	MSKCC	GRCh37	1	22413037	22413037	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			226	72	348	0	ENST00000344548.3:c.287del	p.Lys96SerfsTer6	p.K96Sfs*6	ENST00000344548	NM_001039802.1	95	gAa/ga																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488893	231488894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			327	84	426	0	ENST00000295050.7:c.1262_1263dup	p.Ile422LeufsTer7	p.I422Lfs*7	ENST00000295050	NM_032018.5	419	aat/aaTTt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939064	36939065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			409	175	611	0	ENST00000361632.4:c.644dup	p.Gln216ThrfsTer5	p.Q216Tfs*5	ENST00000361632		215	cca/ccCa																																																																															
MPL	4352	MSKCC	GRCh37	1	43814991	43814991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			405	132	562	0	ENST00000372470.3:c.1526G>A	p.Gly509Asp	p.G509D	ENST00000372470	NM_005373.2	509	gGc/gAc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123325092	123325092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	131	536	0	ENST00000358487.5:c.236T>C	p.Leu79Ser	p.L79S	ENST00000358487	NM_000141.4	79	tTg/tCg																																																																															
RET	5979	MSKCC	GRCh37	10	43608354	43608354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			531	174	702	0	ENST00000355710.3:c.1702G>T	p.Gly568Cys	p.G568C	ENST00000355710	NM_020975.4	568	Ggc/Tgc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851356	63851357	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs750972708		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			396	113	548	0	ENST00000279873.7:c.2138dup	p.Pro714ThrfsTer12	p.P714Tfs*12	ENST00000279873	NM_032199.2	712	tcc/tCcc																																																																															
CTR9	9646	MSKCC	GRCh37	11	10772983	10772984	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			227	61	293	0	ENST00000361367.2:c.28dup	p.Leu10ProfsTer5	p.L10Pfs*5	ENST00000361367	NM_014633.3	8	-/C																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14317342	14317343	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	62	397	0	ENST00000256196.4:c.167_168del	p.Val56AspfsTer3	p.V56Dfs*3	ENST00000256196		56	gTG/g																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940585	71940585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	143	570	0	ENST00000298229.2:c.736C>T	p.Arg246Cys	p.R246C	ENST00000298229	NM_001567.3	246	Cgc/Tgc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112226	115112226	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			304	83	513	0	ENST00000257566.3:c.1514del	p.Pro505ArgfsTer127	p.P505Rfs*127	ENST00000257566	NM_016569.3	505	cCg/cg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022707	12022707	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			542	77	646	0	ENST00000396373.4:c.816del	p.Ile273SerfsTer5	p.I273Sfs*5	ENST00000396373	NM_001987.4	271	agC/ag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435502	18435503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			348	96	417	0	ENST00000266497.5:c.491dup	p.Asn164LysfsTer3	p.N164Kfs*3	ENST00000266497		163	gaa/gAaa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46125099	46125099	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			246	96	328	0	ENST00000334344.6:c.284+2T>C		p.X95_splice	ENST00000334344	NM_152641.2	95																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49425612	49425613	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			390	148	617	0	ENST00000301067.7:c.12875dup	p.Pro4293ThrfsTer41	p.P4293Tfs*41	ENST00000301067	NM_003482.3	4292	cca/ccCa																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50479157	50479157	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866500998		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			306	95	466	0	ENST00000394963.4:c.5C>T	p.Ala2Val	p.A2V	ENST00000394963	NM_003076.4	2	gCg/gTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514809	103514810	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			511	116	556	0	ENST00000355739.4:c.1314dup	p.Gly439ArgfsTer12	p.G439Rfs*12	ENST00000355739	NM_000123.3	437	gga/ggAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972624	32972624	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	126	445	1	ENST00000380152.3:c.9974T>A	p.Phe3325Tyr	p.F3325Y	ENST00000380152		3325	tTt/tAt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570433	95570433	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs886037700		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			321	201	406	0	ENST00000343455.3:c.3300del	p.Lys1100AsnfsTer44	p.K1100Nfs*44	ENST00000343455	NM_177438.2	1100	aaA/aa																																																																															
BLM	641	MSKCC	GRCh37	15	91312767	91312767	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs577806633		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	27	370	0	ENST00000355112.3:c.2506A>G	p.Arg836Gly	p.R836G	ENST00000355112	NM_000057.2	836	Agg/Ggg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347089	347089	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			320	91	392	0	ENST00000262320.3:c.1922del	p.Lys641ArgfsTer64	p.K641Rfs*64	ENST00000262320	NM_003502.3	641	aAg/ag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658881	3658881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	105	435	0	ENST00000294008.3:c.85C>A	p.Arg29Ser	p.R29S	ENST00000294008	NM_032444.2	29	Cgc/Agc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992435	72992435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	129	524	0	ENST00000268489.5:c.1610C>T	p.Pro537Leu	p.P537L	ENST00000268489	NM_006885.3	537	cCt/cTt																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86545051	86545057	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTAAC	CTGTAAC	TGTAA			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			365	95	548	0	ENST00000262426.4:c.876_882delinsTGTAA	p.Cys293ValfsTer47	p.C293Vfs*47	ENST00000262426	NM_001451.2	292	ccCTGTAAC/ccTGTAA																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86545057	86545057	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			362	95	541	0	ENST00000262426.4:c.885del	p.Ala296ArgfsTer83	p.A296Rfs*83	ENST00000262426	NM_001451.2	294	aaC/aa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028642	12028643	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			334	132	419	0	ENST00000353533.5:c.845_846del	p.Gln282ArgfsTer3	p.Q282Rfs*3	ENST00000353533	NM_003010.3	282	cAA/c																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004889	16004889	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	126	433	0	ENST00000268712.3:c.2365A>G	p.Ser789Gly	p.S789G	ENST00000268712	NM_006311.3	789	Agt/Ggt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029447	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			375	71	469	0	ENST00000268712.3:c.1583_1584del	p.Lys528ArgfsTer7	p.K528Rfs*7	ENST00000268712	NM_006311.3	528	aAA/a																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16046960	16046960	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			326	31	313	0	ENST00000268712.3:c.1133A>G	p.His378Arg	p.H378R	ENST00000268712	NM_006311.3	378	cAt/cGt																																																																															
GPS2	2874	MSKCC	GRCh37	17	7218347	7218348	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			306	100	379	1	ENST00000380728.2:c.24dup	p.Lys9GlnfsTer30	p.K9Qfs*30	ENST00000380728		8	-/C																																																																															
MALT1	10892	MSKCC	GRCh37	18	56415049	56415049	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			364	86	357	0	ENST00000348428.3:c.2450A>T	p.Asp817Val	p.D817V	ENST00000348428	NM_006785.3	817	gAc/gTc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250723	10250723	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			395	54	397	0	ENST00000340748.4:c.3757A>G	p.Ser1253Gly	p.S1253G	ENST00000340748		1253	Agc/Ggc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10259588	10259588	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			377	134	439	0	ENST00000340748.4:c.2644del	p.Thr882ProfsTer13	p.T882Pfs*13	ENST00000340748		882	Acc/cc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602650	10602650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			411	128	530	0	ENST00000171111.5:c.928C>A	p.Leu310Met	p.L310M	ENST00000171111	NM_203500.1	310	Ctg/Atg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375402	15375402	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	128	537	0	ENST00000263377.2:c.1025del	p.Pro342GlnfsTer59	p.P342Qfs*59	ENST00000263377	NM_058243.2	342	cCa/ca																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17384805	17384805	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			511	46	537	1	ENST00000359435.4:c.437T>C	p.Leu146Pro	p.L146P	ENST00000359435	NM_001033549.1	146	cTg/cCg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30314617	30314618	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			374	146	501	0	ENST00000262643.3:c.1170dup	p.Ser391GlnfsTer11	p.S391Qfs*11	ENST00000262643	NM_001238.2	389	ctc/ctCc																																																																															
CIC	23152	MSKCC	GRCh37	19	42799179	42799179	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			260	111	430	0	ENST00000575354.2:c.4667del	p.Gly1556AlafsTer64	p.G1556Afs*64	ENST00000575354	NM_015125.3	1555	Ggg/gg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855800	45855801	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			411	134	565	0	ENST00000391945.4:c.2009dup	p.Lys671GlnfsTer103	p.K671Qfs*103	ENST00000391945	NM_000400.3	670	ggc/ggGc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52719886	52719887	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			398	129	505	0	ENST00000322088.6:c.1102dup	p.Leu368ProfsTer9	p.L368Pfs*9	ENST00000322088	NM_014225.5	366	-/C																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872924	136872925	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			426	121	537	0	ENST00000241393.3:c.573dup	p.Asn192GlnfsTer2	p.N192Qfs*2	ENST00000241393	NM_003467.2	191	-/C																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198269833	198269834	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			302	116	401	0	ENST00000335508.6:c.1505dup	p.Leu502PhefsTer4	p.L502Ffs*4	ENST00000335508	NM_012433.2	502	tta/ttTa																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605188	46605189	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			321	98	401	0	ENST00000263734.3:c.1410dup	p.Ser471GlnfsTer14	p.S471Qfs*14	ENST00000263734	NM_001430.4	469	acc/aCcc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607364	46607364	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			300	93	478	0	ENST00000263734.3:c.1555-2A>G		p.X519_splice	ENST00000263734	NM_001430.4	519																																																																																
TOP1	7150	MSKCC	GRCh37	20	39706242	39706242	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			292	70	306	0	ENST00000361337.2:c.304del	p.Ile102Ter	p.I102*	ENST00000361337	NM_003286.2	100	gcA/gc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306559	41306559	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			325	97	359	0	ENST00000373198.4:c.1100del	p.Glu367GlyfsTer30	p.E367Gfs*30	ENST00000373198	NM_133170.3	367	gAg/gg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62316928	62316929	+	frameshift_variant,NMD_transcript_variant	Frame_Shift_Ins	INS	-	-	G			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			398	138	514	0	ENST00000482936.1:c.1249dup	p.Ala417GlyfsTer6	p.A417Gfs*6	ENST00000482936		415	ctg/ctGg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62325832	62325832	+	frameshift_variant,NMD_transcript_variant	Frame_Shift_Del	DEL	C	C	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	29	447	0	ENST00000482936.1:c.3104del	p.Pro1035GlnfsTer26	p.P1035Qfs*26	ENST00000482936		1034	Ccc/cc																																																																															
EP300	2033	MSKCC	GRCh37	22	41573946	41573946	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			418	122	596	0	ENST00000263253.7:c.6235del	p.Gln2079SerfsTer55	p.Q2079Sfs*55	ENST00000263253	NM_001429.3	2077	aaC/aa																																																																															
RAF1	5894	MSKCC	GRCh37	3	12641708	12641708	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			452	116	533	0	ENST00000251849.4:c.933del	p.Val312CysfsTer33	p.V312Cfs*33	ENST00000251849	NM_002880.3	311	ccC/cc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170002299	170002299	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			164	39	187	0	ENST00000295797.4:c.1118G>T	p.Gly373Val	p.G373V	ENST00000295797	NM_002740.5	373	gGg/gTg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436840	52436841	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	129	541	0	ENST00000460680.1:c.1937_1938del	p.Tyr646Ter	p.Y646*	ENST00000460680	NM_004656.3	646	tAT/t																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643942	52643943	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			292	93	410	0	ENST00000394830.3:c.1952_1953dup	p.Ser652AsnfsTer5	p.S652Nfs*5	ENST00000394830	NM_018313.4	651	-/AA																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52677360	52677360	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			330	99	404	0	ENST00000394830.3:c.900-1G>A		p.X300_splice	ENST00000394830	NM_018313.4	300																																																																																
ATXN7	6314	MSKCC	GRCh37	3	63981399	63981399	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138640161		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			414	166	558	0	ENST00000295900.6:c.1901C>T	p.Ala634Val	p.A634V	ENST00000295900	NM_000333.3	634	gCg/gTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518112	187518113	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			398	146	523	0	ENST00000441802.2:c.12581dup	p.Leu4194PhefsTer11	p.L4194Ffs*11	ENST00000441802	NM_005245.3	4194	tta/ttTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521327	187521327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			453	24	427	0	ENST00000441802.2:c.11828C>T	p.Thr3943Ile	p.T3943I	ENST00000441802	NM_005245.3	3943	aCc/aTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295267	1295267	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			229	72	327	0				ENST00000310581	NM_198253.2																																																																																	
RAD50	10111	MSKCC	GRCh37	5	131893130	131893131	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			379	102	429	0	ENST00000265335.6:c.118dup	p.Ala40GlyfsTer8	p.A40Gfs*8	ENST00000265335		38	-/G																																																																															
PRDM1	639	MSKCC	GRCh37	6	106547293	106547293	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			536	32	501	0	ENST00000369096.4:c.530A>G	p.Gln177Arg	p.Q177R	ENST00000369096	NM_001198.3	177	cAg/cGg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152201906	152201906	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	69	308	0	ENST00000206249.3:c.760G>T	p.Gly254Trp	p.G254W	ENST00000206249	NM_000125.3	254	Ggg/Tgg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056588	26056590	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs751086925		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	96	467	0	ENST00000343677.2:c.67_69del	p.Lys23del	p.K23del	ENST00000343677	NM_005319.3	23	AAG/-																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239066	31239066	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs281860464		P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			561	114	727	0	ENST00000376228.5:c.403C>T	p.Arg135Cys	p.R135C	ENST00000376228	NM_002117.5	135	Cgc/Tgc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324567	31324568	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			235	121	419	0	ENST00000412585.2:c.239_240dup	p.Pro81GlyfsTer71	p.P81Gfs*71	ENST00000412585	NM_005514.6	80	-/GG																																																																															
POT1	25913	MSKCC	GRCh37	7	124467341	124467342	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			303	79	389	0	ENST00000357628.3:c.1612dup	p.Leu538ProfsTer12	p.L538Pfs*12	ENST00000357628	NM_015450.2	538	ctc/cCtc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141572606	141572606	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			383	107	527	0	ENST00000220592.5:c.464del	p.Pro155LeufsTer12	p.P155Lfs*12	ENST00000220592	NM_012154.3	155	cCt/ct																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409097	139409097	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	126	491	0	ENST00000277541.6:c.2072del	p.Gly691AlafsTer81	p.G691Afs*81	ENST00000277541	NM_017617.3	691	gGc/gc																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0072138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	46	211	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0072138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	72	228	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	103	310	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs886039484		P-0072138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	135	512	0	ENST00000269305.4:c.643A>G	p.Ser215Gly	p.S215G	ENST00000269305	NM_001126112.2	215	Agt/Ggt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575102	48575102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0072138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	151	241	0	ENST00000342988.3:c.296G>A	p.Trp99Ter	p.W99*	ENST00000342988	NM_005359.5	99	tGg/tAg																																																																															
INSR	3643	MSKCC	GRCh37	19	7142968	7142968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	152	604	0	ENST00000302850.5:c.2401G>A	p.Val801Met	p.V801M	ENST00000302850	NM_000208.2	801	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0072145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	189	591	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0072145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	266	412	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417865	138417865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	57	333	0	ENST00000289153.2:c.1654G>A	p.Glu552Lys	p.E552K	ENST00000289153	NM_006219.2	552	Gaa/Aaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971099	21971099	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749714198		P-0072145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	156	444	1	ENST00000304494.5:c.259C>T	p.Arg87Trp	p.R87W	ENST00000304494	NM_000077.4	87	Cgg/Tgg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984021	2984021	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766268425		P-0072145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	16	464	0	ENST00000396946.4:c.509G>A	p.Arg170His	p.R170H	ENST00000396946	NM_032415.4	170	cGc/cAc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967156	25967156	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201808592		P-0072145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	120	433	0	ENST00000435504.4:c.2050G>A	p.Ala684Thr	p.A684T	ENST00000435504		684	Gcc/Acc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395749	45395750	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0072145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	43	442	0	ENST00000262160.6:c.384_385insGT	p.Cys129ValfsTer35	p.C129Vfs*35	ENST00000262160	NM_005901.5	128	-/GT																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856359	111856359	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	32	433	0	ENST00000341259.2:c.410A>G	p.His137Arg	p.H137R	ENST00000341259	NM_005475.2	137	cAc/cGc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67569218	67569219	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0072145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	38	389	0	ENST00000274335.5:c.338dup	p.Leu113PhefsTer14	p.L113Ffs*14	ENST00000274335		112	gct/gcTt																																																																															
NADK	65220	MSKCC	GRCh37	1	1688545	1688545	+	intron_variant	Intron	SNP	C	C	T	rs1015720948		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	23	483	0	ENST00000341426.5:c.393+75G>A		p.*131*	ENST00000341426	NM_023018.4																																																																																	
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	31	407	1	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056211	27056211	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs878853088		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	33	529	0	ENST00000324856.7:c.1207C>T	p.Gln403Ter	p.Q403*	ENST00000324856	NM_006015.4	403	Cag/Tag																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599939	28599939	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757342510		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	16	456	0	ENST00000253063.3:c.821G>A	p.Arg274Gln	p.R274Q	ENST00000253063	NM_031459.4	274	cGg/cAg																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46509358	46509358	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764723132		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	35	518	0	ENST00000262741.5:c.1373C>T	p.Ser458Leu	p.S458L	ENST00000262741	NM_003629.3	458	tCg/tTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	43	437	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1181132297		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	49	463	4	ENST00000342505.4:c.1016del	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	68	492	0	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163309259	163309260	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	29	323	0	ENST00000271452.3:c.604dup	p.Thr202AsnfsTer24	p.T202Nfs*24	ENST00000271452	NM_145697.2	200	caa/cAaa																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154242	2154242	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1388678905		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	19	506	1	ENST00000434045.2:c.686del	p.Pro229GlnfsTer27	p.P229Qfs*27	ENST00000434045	NM_001127598.1	229	cCa/ca																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625159	69625159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	51	480	0	ENST00000334134.2:c.634C>T	p.Arg212Trp	p.R212W	ENST00000334134	NM_005247.2	212	Cgg/Tgg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	25	530	0	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	32	634	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	17	242	0	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18491390	18491390	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1377942847		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	31	322	3	ENST00000266497.5:c.1309del	p.Ile437TyrfsTer5	p.I437Yfs*5	ENST00000266497		435	Aaa/aa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230571	46230571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	34	445	0	ENST00000334344.6:c.820C>T	p.Arg274Ter	p.R274*	ENST00000334344	NM_152641.2	274	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424529	49424529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749198835		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	37	543	0	ENST00000301067.7:c.13694C>T	p.Thr4565Met	p.T4565M	ENST00000301067	NM_003482.3	4565	aCg/aTg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495714	56495714	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	16	428	0	ENST00000267101.3:c.3904G>C	p.Ala1302Pro	p.A1302P	ENST00000267101	NM_001982.3	1302	Gcc/Ccc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	35	456	5	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
POLE	5426	MSKCC	GRCh37	12	133209337	133209337	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs115452769		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	30	538	0	ENST00000320574.5:c.6049C>T	p.Arg2017Cys	p.R2017C	ENST00000320574	NM_006231.2	2017	Cgc/Tgc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913836	32913837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	18	374	0	ENST00000380152.3:c.5351dup	p.Asn1784LysfsTer3	p.N1784Kfs*3	ENST00000380152		1782	caa/cAaa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500476	99500476	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	31	610	0	ENST00000268035.6:c.3913del	p.Leu1305TrpfsTer45	p.L1305Wfs*45	ENST00000268035	NM_000875.3	1303	gtC/gt																																																																															
CYLD	1540	MSKCC	GRCh37	16	50815308	50815308	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772603046		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	38	434	0	ENST00000398568.2:c.1661G>A	p.Arg554His	p.R554H	ENST00000398568	NM_001042412.1	554	cGc/cAc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644791	67644791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	52	564	0	ENST00000264010.4:c.56G>A	p.Gly19Glu	p.G19E	ENST00000264010	NM_006565.3	19	gGa/gAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830535	72830535	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776901666		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	29	514	0	ENST00000268489.5:c.6046G>A	p.Glu2016Lys	p.E2016K	ENST00000268489	NM_006885.3	2016	Gag/Aag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350203	89350203	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	32	578	0	ENST00000301030.4:c.2747del	p.Asn916ThrfsTer61	p.N916Tfs*61	ENST00000301030	NM_001256183.1	916	aAc/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578470	7578470	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137852789		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	35	602	0	ENST00000269305.4:c.460G>A	p.Gly154Ser	p.G154S	ENST00000269305	NM_001126112.2	154	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579359	7579359	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781371		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	32	565	0	ENST00000269305.4:c.328C>T	p.Arg110Cys	p.R110C	ENST00000269305	NM_001126112.2	110	Cgt/Tgt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627730	37627730	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	16	423	0	ENST00000447079.4:c.1649del	p.Pro550LeufsTer60	p.P550Lfs*60	ENST00000447079	NM_015083.1	549	Ccc/cc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686901	37686901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	27	367	0	ENST00000447079.4:c.3810del	p.Gly1271AspfsTer23	p.G1271Dfs*23	ENST00000447079	NM_015083.1	1269	Ccc/cc																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38792252	38792252	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1251821702		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	30	437	0	ENST00000348513.6:c.472C>T	p.Arg158Ter	p.R158*	ENST00000348513	NM_003079.4	158	Cga/Tga																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246152	41246152	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80356964		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	37	467	0	ENST00000357654.3:c.1396C>T	p.Arg466Trp	p.R466W	ENST00000357654	NM_007294.3	466	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	117	697	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59858268	59858268	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	41	394	0	ENST00000259008.2:c.1727del	p.Asn576IlefsTer14	p.N576Ifs*14	ENST00000259008	NM_032043.2	576	aAt/at																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118940	70118941	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	91	660	0	ENST00000245479.2:c.514dup	p.Tyr172LeufsTer80	p.Y172Lfs*80	ENST00000245479	NM_000346.3	171	gat/gaTt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120381	70120382	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	85	577	0	ENST00000245479.2:c.1386_1387dup	p.Tyr463SerfsTer8	p.Y463Sfs*8	ENST00000245479	NM_000346.3	461	-/CT																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905055	50905055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	27	440	0	ENST00000440232.2:c.342del	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	113	Ggg/gg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905061	50905061	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	24	432	2	ENST00000440232.2:c.347del	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	115	Ccc/cc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505418	25505418	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	20	410	0	ENST00000264709.3:c.340del	p.Ala114ProfsTer48	p.A114Pfs*48	ENST00000264709	NM_175629.2	114	Gcc/cc																																																																															
ALK	238	MSKCC	GRCh37	2	29606697	29606697	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779282861		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	33	448	0	ENST00000389048.3:c.1183C>T	p.Arg395Cys	p.R395C	ENST00000389048	NM_004304.4	395	Cgt/Tgt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99181169	99181169	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778648043		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	31	464	0	ENST00000074304.5:c.2110C>T	p.Arg704Cys	p.R704C	ENST00000074304	NM_001134224.1	704	Cgc/Tgc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989591	212989592	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	37	431	1	ENST00000342788.4:c.119_120del	p.Ser40Ter	p.S40*	ENST00000342788	NM_005235.2	40	tCT/t																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	34	583	2	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11554273		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	15	426	0	ENST00000371085.3:c.601C>A	p.Arg201Ser	p.R201S	ENST00000371085	NM_000516.4	201	Cgt/Agt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164703	36164703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	40	600	0	ENST00000300305.3:c.1172C>T	p.Ala391Val	p.A391V	ENST00000300305		391	gCg/gTg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845287	42845287	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	35	452	1	ENST00000398585.3:c.975del	p.Glu326SerfsTer4	p.E326Sfs*4	ENST00000398585	NM_001135099.1	325	ccC/cc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513282	44513287	+	inframe_deletion	In_Frame_Del	DEL	CCACCG	CCACCG	-	rs769920981		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	29	511	0	ENST00000291552.4:c.648_653del	p.Gly222_Gly223del	p.G222_G223del	ENST00000291552	NM_006758.2	216	ggCGGTGGt/ggt																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445404	29445404	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	31	644	0	ENST00000544604.2:c.1239del	p.Ala414ProfsTer38	p.A414Pfs*38	ENST00000544604	NM_001206998.1	412	aCc/ac																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52623139	52623139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	57	469	0	ENST00000394830.3:c.2912C>T	p.Ala971Val	p.A971V	ENST00000394830	NM_018313.4	971	gCc/gTc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	38	418	0	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	44	564	2	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
MITF	4286	MSKCC	GRCh37	3	70014077	70014077	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201351378		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	30	487	0	ENST00000352241.4:c.1241G>A	p.Arg414Gln	p.R414Q	ENST00000352241	NM_198159.2	414	cGg/cAg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480306	89480306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	25	362	0	ENST00000336596.2:c.2143G>A	p.Asp715Asn	p.D715N	ENST00000336596	NM_005233.5	715	Gat/Aat																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202801	128202801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	38	556	0	ENST00000341105.2:c.919C>T	p.Arg307Trp	p.R307W	ENST00000341105	NM_032638.4	307	Cgg/Tgg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851891	134851891	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs769821589		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	36	455	0	ENST00000398015.3:c.1297G>A	p.Ala433Thr	p.A433T	ENST00000398015	NM_004441.4	433	Gcc/Acc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526597	31526597	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	21	355	0	ENST00000344624.3:c.443del	p.Pro148LeufsTer78	p.P148Lfs*78	ENST00000344624		148	cCt/ct																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	27	231	0	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																															
APC	324	MSKCC	GRCh37	5	112177864	112177864	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs775076289		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	37	397	1	ENST00000257430.4:c.6579del	p.Val2194PhefsTer5	p.V2194Ffs*5	ENST00000257430	NM_000038.5	2191	ggA/gg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048635	180048635	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150093355		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	27	526	0	ENST00000261937.6:c.1927G>A	p.Val643Ile	p.V643I	ENST00000261937	NM_182925.4	643	Gtc/Atc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	18	617	1	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816545	32816545	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778774698		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	58	521	0	ENST00000354258.4:c.1630C>T	p.Arg544Cys	p.R544C	ENST00000354258	NM_000593.5	544	Cgc/Tgc																																																																															
CCND3	896	MSKCC	GRCh37	6	41903745	41903745	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	57	580	0	ENST00000372991.4:c.812G>C	p.Arg271Pro	p.R271P	ENST00000372991	NM_001760.3	271	cGg/cCg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552838	106552838	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367766895		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	36	598	0	ENST00000369096.4:c.803G>A	p.Arg268His	p.R268H	ENST00000369096	NM_001198.3	268	cGt/cAt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681120	117681120	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772514180		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	31	434	0	ENST00000368508.3:c.3500del	p.Leu1167Ter	p.L1167*	ENST00000368508	NM_002944.2	1167	tTa/ta																																																																															
ROS1	6098	MSKCC	GRCh37	6	117715449	117715449	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780553416		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	35	356	0	ENST00000368508.3:c.1040C>T	p.Ala347Val	p.A347V	ENST00000368508	NM_002944.2	347	gCg/gTg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199674	138199675	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	45	546	0	ENST00000237289.4:c.1097_1098del	p.Glu366GlyfsTer22	p.E366Gfs*22	ENST00000237289	NM_001270507.1	364	agGAga/agga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962853	2962854	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	28	395	0	ENST00000396946.4:c.2054dup	p.Asn686GlnfsTer23	p.N686Qfs*23	ENST00000396946	NM_032415.4	685	ggc/ggGc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	27	353	4	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	21	545	2	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
SMO	6608	MSKCC	GRCh37	7	128829075	128829075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1247591045		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	10	364	1	ENST00000249373.3:c.88del	p.Ala30ArgfsTer25	p.A30Rfs*25	ENST00000249373	NM_005631.4	28	cGg/cg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	62	368	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
NBN	4683	MSKCC	GRCh37	8	90967511	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	38	315	1	ENST00000265433.3:c.1396dup	p.Arg466LysfsTer5	p.R466Kfs*5	ENST00000265433	NM_002485.4	466	agg/aAgg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	21	444	0	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882049	36882050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs780753361		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	30	539	0	ENST00000358127.4:c.963dup	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	-/C																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80336333	80336333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	54	487	0	ENST00000286548.4:c.986C>T	p.Thr329Met	p.T329M	ENST00000286548	NM_002072.3	329	aCg/aTg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564754	139564755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs878890965		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	28	391	2	ENST00000308874.7:c.549dup	p.Arg184GlnfsTer100	p.R184Qfs*100	ENST00000308874		181	-/C																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934126	39934127	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	45	496	0	ENST00000378444.4:c.472dup	p.Ser158LysfsTer28	p.S158Kfs*28	ENST00000378444	NM_001123385.1	158	agt/aAgt																																																																															
ARAF	369	MSKCC	GRCh37	X	47422384	47422384	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	18	416	0	ENST00000377045.4:c.23del	p.Pro8LeufsTer26	p.P8Lfs*26	ENST00000377045	NM_001654.4	6	ggC/gg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	36	667	0	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	33	458	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
AR	367	MSKCC	GRCh37	X	66766114	66766114	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	34	518	0	ENST00000374690.3:c.1130del	p.Pro377LeufsTer102	p.P377Lfs*102	ENST00000374690	NM_000044.3	376	Ccc/cc																																																																															
ATRX	546	MSKCC	GRCh37	X	76778843	76778843	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	49	408	0	ENST00000373344.5:c.6736G>T	p.Glu2246Ter	p.E2246*	ENST00000373344	NM_000489.3	2246	Gaa/Taa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279831	46279836	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-	rs764026511		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	28	548	1	ENST00000371998.3:c.3762_3767del	p.Gln1275_Gln1276del	p.Q1275_Q1276del	ENST00000371998		1253	CAGCAA/-																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	41	542	1	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115266515	115266515	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	38	343	0	ENST00000438362.2:c.2000T>C	p.Ile667Thr	p.I667T	ENST00000438362	NM_001242891.1	667	aTt/aCt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115277084	115277084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	33	425	0	ENST00000438362.2:c.699G>T	p.Gln233His	p.Q233H	ENST00000438362	NM_001242891.1	233	caG/caT																																																																															
CTR9	9646	MSKCC	GRCh37	11	10794725	10794725	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1402421753		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	40	395	0	ENST00000361367.2:c.2632C>T	p.Arg878Trp	p.R878W	ENST00000361367	NM_014633.3	878	Cgg/Tgg																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205191	61205191	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	33	407	0	ENST00000301761.2:c.134del	p.Lys45ArgfsTer3	p.K45Rfs*3	ENST00000301761	NM_017841.2	44	cAa/ca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420390	49420390	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767486251		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	76	524	0	ENST00000301067.7:c.15359G>A	p.Arg5120His	p.R5120H	ENST00000301067	NM_003482.3	5120	cGt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434894	49434894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	29	607	0	ENST00000301067.7:c.6659C>T	p.Ala2220Val	p.A2220V	ENST00000301067	NM_003482.3	2220	gCt/gTt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900733	32900733	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	30	386	0	ENST00000380152.3:c.614G>C	p.Ser205Thr	p.S205T	ENST00000380152		205	aGt/aCt																																																																															
MGA	23269	MSKCC	GRCh37	15	42035239	42035239	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	31	519	0	ENST00000219905.7:c.5081C>G	p.Ala1694Gly	p.A1694G	ENST00000219905	NM_001164273.1	1694	gCt/gGt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251108	99251108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867511424		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	39	498	0	ENST00000268035.6:c.412C>T	p.Arg138Trp	p.R138W	ENST00000268035	NM_000875.3	138	Cgg/Tgg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434637	99434637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	27	528	0	ENST00000268035.6:c.724C>T	p.Pro242Ser	p.P242S	ENST00000268035	NM_000875.3	242	Cct/Tct																																																																															
TSC2	7249	MSKCC	GRCh37	16	2131637	2131637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	44	497	0	ENST00000219476.3:c.3652C>T	p.Pro1218Ser	p.P1218S	ENST00000219476	NM_000548.3	1218	Cct/Tct																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641173	3641173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	21	573	0	ENST00000294008.3:c.2466G>A	p.Met822Ile	p.M822I	ENST00000294008	NM_032444.2	822	atG/atA																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916255	9916256	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	32	511	0	ENST00000330684.3:c.2033dup	p.Pro679ThrfsTer9	p.P679Tfs*9	ENST00000330684	NM_001134407.1	678	cca/ccCa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348341	89348341	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	41	634	0	ENST00000301030.4:c.4609G>T	p.Gly1537Cys	p.G1537C	ENST00000301030	NM_001256183.1	1537	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7573976	7573976	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs141402957		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	26	415	0	ENST00000269305.4:c.1051A>G	p.Lys351Glu	p.K351E	ENST00000269305	NM_001126112.2	351	Aag/Gag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16001755	16001755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781456795		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	37	427	0	ENST00000268712.3:c.2746G>A	p.Val916Ile	p.V916I	ENST00000268712	NM_006311.3	916	Gtc/Atc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40375547	40375547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760681474		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	38	518	0	ENST00000293328.3:c.403G>A	p.Asp135Asn	p.D135N	ENST00000293328	NM_012448.3	135	Gat/Aat																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440689	56440690	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	40	577	0	ENST00000407977.2:c.528_529del	p.Tyr177GlnfsTer10	p.Y177Qfs*10	ENST00000407977		176	gtGTac/gtac																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61306507	61306507	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	34	469	0	ENST00000341074.5:c.680T>C	p.Val227Ala	p.V227A	ENST00000341074	NM_002974.2	227	gTa/gCa																																																																															
STK11	6794	MSKCC	GRCh37	19	1223078	1223078	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769644352		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	36	529	0	ENST00000326873.7:c.1015C>T	p.Pro339Ser	p.P339S	ENST00000326873	NM_000455.4	339	Ccg/Tcg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17389815	17389817	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-	rs778638189		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	37	489	0	ENST00000359435.4:c.957_959del	p.Glu319del	p.E319del	ENST00000359435	NM_001033549.1	316	ctGGAg/ctg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18943217	18943217	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	14	255	1	ENST00000262803.5:c.199G>T	p.Ala67Ser	p.A67S	ENST00000262803	NM_002911.3	67	Gcg/Tcg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221462	36221462	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	33	628	0	ENST00000222270.7:c.5221G>T	p.Gly1741Cys	p.G1741C	ENST00000222270	NM_014727.1	1741	Ggt/Tgt																																																																															
ALK	238	MSKCC	GRCh37	2	30143053	30143053	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	38	623	0	ENST00000389048.3:c.473C>A	p.Pro158His	p.P158H	ENST00000389048	NM_004304.4	158	cCc/cAc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128050394	128050394	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762406830		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	32	445	0	ENST00000285398.2:c.263C>T	p.Ala88Val	p.A88V	ENST00000285398	NM_000122.1	88	gCc/gTc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198262754	198262754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	23	339	0	ENST00000335508.6:c.3221G>A	p.Arg1074His	p.R1074H	ENST00000335508	NM_012433.2	1074	cGt/cAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57466877	57466877	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	21	250	0	ENST00000371085.3:c.96G>T	p.Lys32Asn	p.K32N	ENST00000371085	NM_000516.4	32	aaG/aaT																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21350082	21350082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140874089		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	27	507	0	ENST00000215739.8:c.1990G>A	p.Ala664Thr	p.A664T	ENST00000215739	NM_006767.3	664	Gcg/Acg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37081769	37081769	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	21	337	0	ENST00000231790.2:c.1651A>G	p.Asn551Asp	p.N551D	ENST00000231790	NM_000249.3	551	Aac/Gac																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934833	49934833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	42	607	0	ENST00000296474.3:c.2063C>T	p.Ala688Val	p.A688V	ENST00000296474	NM_002447.2	688	gCa/gTa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440305	52440305	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	35	501	0	ENST00000460680.1:c.747G>T	p.Lys249Asn	p.K249N	ENST00000460680	NM_004656.3	249	aaG/aaT																																																																															
KIT	3815	MSKCC	GRCh37	4	55599238	55599238	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	26	360	0	ENST00000288135.5:c.2364T>A	p.Cys788Ter	p.C788*	ENST00000288135	NM_000222.2	788	tgT/tgA																																																																															
ALB	213	MSKCC	GRCh37	4	74270853	74270853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	31	304	0	ENST00000295897.4:c.100C>T	p.Arg34Trp	p.R34W	ENST00000295897	NM_000477.5	34	Cgg/Tgg																																																																															
TET2	54790	MSKCC	GRCh37	4	106162580	106162580	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	23	311	0	ENST00000380013.4:c.3494A>G	p.Glu1165Gly	p.E1165G	ENST00000380013	NM_001127208.2	1165	gAa/gGa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584539	187584539	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	40	435	0	ENST00000441802.2:c.3494A>T	p.Asp1165Val	p.D1165V	ENST00000441802	NM_005245.3	1165	gAt/gTt																																																																															
MSH3	4437	MSKCC	GRCh37	5	80083426	80083426	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	38	430	1	ENST00000265081.6:c.2478T>A	p.His826Gln	p.H826Q	ENST00000265081	NM_002439.4	826	caT/caA																																																																															
RASA1	5921	MSKCC	GRCh37	5	86679561	86679561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	12	309	0	ENST00000274376.6:c.2722G>A	p.Ala908Thr	p.A908T	ENST00000274376	NM_002890.2	908	Gcc/Acc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522393	176522393	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1361563193		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	36	504	0	ENST00000292408.4:c.1582G>A	p.Gly528Ser	p.G528S	ENST00000292408	NM_213647.1	528	Ggc/Agc																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43748492	43748492	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	31	460	0	ENST00000523873.1:c.446A>C	p.Lys149Thr	p.K149T	ENST00000523873		149	aAg/aCg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117658458	117658458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	83	454	0	ENST00000368508.3:c.5125G>A	p.Gly1709Ser	p.G1709S	ENST00000368508	NM_002944.2	1709	Ggt/Agt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513258	106513258	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	44	466	0	ENST00000359195.3:c.2162T>G	p.Leu721Arg	p.L721R	ENST00000359195	NM_002649.2	721	cTg/cGg																																																																															
POT1	25913	MSKCC	GRCh37	7	124481057	124481057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	21	259	0	ENST00000357628.3:c.1339C>T	p.Leu447Phe	p.L447F	ENST00000357628	NM_015450.2	447	Ctt/Ttt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151835911	151835911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	45	431	0	ENST00000262189.6:c.14613C>A	p.Ser4871Arg	p.S4871R	ENST00000262189	NM_170606.2	4871	agC/agA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151846071	151846071	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	48	549	0	ENST00000262189.6:c.12941A>G	p.Glu4314Gly	p.E4314G	ENST00000262189	NM_170606.2	4314	gAa/gGa																																																																															
LYN	4067	MSKCC	GRCh37	8	56863244	56863244	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	26	433	0	ENST00000519728.1:c.392del	p.Phe131SerfsTer4	p.F131Sfs*4	ENST00000519728	NM_002350.3	130	Ttt/tt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741213	145741213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	41	580	0	ENST00000428558.2:c.1193C>T	p.Thr398Ile	p.T398I	ENST00000428558	NM_004260.3	398	aCa/aTa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742079	145742079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781248589		P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	23	504	0	ENST00000428558.2:c.424C>T	p.Pro142Ser	p.P142S	ENST00000428558	NM_004260.3	142	Ccc/Tcc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841124	15841124	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	43	560	0	ENST00000307771.7:c.1212del	p.Lys405ArgfsTer?	p.K405Rfs*?	ENST00000307771	NM_005089.3	403	aGg/ag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412085	63412085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	35	570	0	ENST00000330258.3:c.1082G>A	p.Cys361Tyr	p.C361Y	ENST00000330258	NM_152424.3	361	tGc/tAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436149	56436149	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0072161-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	63	599	0	ENST00000407977.2:c.988C>T	p.Arg330Ter	p.R330*	ENST00000407977		330	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0072161-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	93	640	0	ENST00000269305.4:c.672+1G>C		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48575143	48575143	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0072161-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	36	441	0	ENST00000342988.3:c.337A>T	p.Lys113Ter	p.K113*	ENST00000342988	NM_005359.5	113	Aaa/Taa																																																																															
CIC	23152	MSKCC	GRCh37	19	42794895	42794895	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1202750552		P-0072161-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	61	622	0	ENST00000575354.2:c.1975G>T	p.Ala659Ser	p.A659S	ENST00000575354	NM_015125.3	659	Gcc/Tcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0072169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	27	150	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0072169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	131	683	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0072169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	100	498	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174754	112174754	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	67	440	0	ENST00000257430.4:c.3463G>T	p.Glu1155Ter	p.E1155*	ENST00000257430	NM_000038.5	1155	Gaa/Taa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67655359	67655359	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	66	372	0	ENST00000264010.4:c.1222G>T	p.Glu408Ter	p.E408*	ENST00000264010	NM_006565.3	408	Gaa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100391	27100391	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0072176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	34	593	0	ENST00000324856.7:c.4101+2T>C		p.X1367_splice	ENST00000324856	NM_006015.4	1367																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398262	25398262	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913538		P-0072176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	54	350	0	ENST00000256078.4:c.57G>T	p.Leu19Phe	p.L19F	ENST00000256078	NM_033360.2	19	ttG/ttT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0072176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	155	731	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584593	48584593	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	122	583	0	ENST00000342988.3:c.766C>T	p.Gln256Ter	p.Q256*	ENST00000342988	NM_005359.5	256	Cag/Tag																																																																															
TET2	54790	MSKCC	GRCh37	4	106155611	106155611	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1356123196		P-0072176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	30	520	0	ENST00000380013.4:c.512G>T	p.Cys171Phe	p.C171F	ENST00000380013	NM_001127208.2	171	tGc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0072176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	73	541	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332874	152332874	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	39	388	0	ENST00000206249.3:c.1180C>G	p.Arg394Gly	p.R394G	ENST00000206249	NM_000125.3	394	Cgc/Ggc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527628	157527628	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766977678		P-0072176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	43	555	0	ENST00000346085.5:c.5353G>A	p.Asp1785Asn	p.D1785N	ENST00000346085	NM_020732.3	1785	Gac/Aac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710960	114710961	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	GGAAGGC			P-0072176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	68	332	0	ENST00000543371.1:c.190-1_195dup		p.X64_splice	ENST00000543371	NM_001198531.1	64																																																																																
TP63	8626	MSKCC	GRCh37	3	189586469	189586469	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	48	510	0	ENST00000264731.3:c.1093T>G	p.Ser365Ala	p.S365A	ENST00000264731	NM_003722.4	365	Tcg/Gcg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390975	139390975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	54	676	0	ENST00000277541.6:c.7216C>A	p.Gln2406Lys	p.Q2406K	ENST00000277541	NM_017617.3	2406	Caa/Aaa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			106	21	316	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			92	50	277	0	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			135	95	488	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177584	56177584	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368201444		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			125	42	348	0	ENST00000399503.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000399503	NM_005921.1	853	Cgt/Tgt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027093	71027093	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200629338		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			306	77	525	1	ENST00000318789.4:c.1234G>A	p.Ala412Thr	p.A412T	ENST00000318789	NM_032682.5	412	Gcc/Acc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			155	32	427	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			128	33	420	1	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			155	36	316	3	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238958	5238958	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			112	14	372	0	ENST00000357368.4:c.1821del	p.Val608TrpfsTer30	p.V608Wfs*30	ENST00000357368	NM_002850.3	607	ccC/cc																																																																															
SYK	6850	MSKCC	GRCh37	9	93606193	93606193	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146743944		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			118	23	344	0	ENST00000375746.1:c.13G>A	p.Gly5Ser	p.G5S	ENST00000375746	NM_001174167.1	5	Ggc/Agc																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154242	2154242	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1388678905		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			104	18	453	0	ENST00000434045.2:c.686del	p.Pro229GlnfsTer27	p.P229Qfs*27	ENST00000434045	NM_001127598.1	229	cCa/ca																																																																															
MYC	4609	MSKCC	GRCh37	8	128752960	128752960	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			287	173	420	0	ENST00000377970.2:c.1121A>G	p.His374Arg	p.H374R	ENST00000377970	NM_002467.4	374	cAc/cGc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347720	89347720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			153	51	527	0	ENST00000301030.4:c.5230C>T	p.His1744Tyr	p.H1744Y	ENST00000301030	NM_001256183.1	1744	Cac/Tac																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033421	48033421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs63750119		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			125	44	351	0	ENST00000234420.5:c.3725G>A	p.Arg1242His	p.R1242H	ENST00000234420	NM_000179.2	1242	cGt/cAt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89858916	89858916	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142620413		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			160	53	337	0	ENST00000389301.3:c.1046C>T	p.Ala349Val	p.A349V	ENST00000389301	NM_000135.2	349	gCg/gTg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646981	23646981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs587776408		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			113	48	392	2	ENST00000261584.4:c.886del	p.Met296Ter	p.M296*	ENST00000261584	NM_024675.3	296	Atg/tg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			102	25	315	1	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932085	39932085	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			80	83	225	0	ENST00000378444.4:c.2514del	p.Lys839SerfsTer17	p.K839Sfs*17	ENST00000378444	NM_001123385.1	838	ccC/cc																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			199	31	464	3	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38282215	38282215	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			167	25	425	0	ENST00000425967.3:c.841C>T	p.Arg281Trp	p.R281W	ENST00000425967	NM_001174067.1	281	Cgg/Tgg																																																																															
TET2	54790	MSKCC	GRCh37	4	106155778	106155779	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs759055581		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			166	14	411	0	ENST00000380013.4:c.685dup	p.Thr229AsnfsTer25	p.T229Nfs*25	ENST00000380013	NM_001127208.2	227	gaa/gAaa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2103368	2103368	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35660529		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			103	29	291	0	ENST00000219476.3:c.251C>T	p.Ala84Val	p.A84V	ENST00000219476	NM_000548.3	84	gCg/gTg																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841277	15841277	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746617360		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			63	64	228	0	ENST00000307771.7:c.1361G>A	p.Arg454Gln	p.R454Q	ENST00000307771	NM_005089.3	454	cGg/cAg																																																																															
SMO	6608	MSKCC	GRCh37	7	128845518	128845518	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748004767		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			119	21	354	0	ENST00000249373.3:c.815C>T	p.Ala272Val	p.A272V	ENST00000249373	NM_005631.4	272	gCg/gTg																																																																															
AXL	558	MSKCC	GRCh37	19	41744030	41744030	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			149	38	394	0	ENST00000301178.4:c.965A>G	p.His322Arg	p.H322R	ENST00000301178	NM_021913.4	322	cAc/cGc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			149	30	292	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			188	30	371	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9928076	9928076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			90	22	344	0	ENST00000330684.3:c.1663G>A	p.Ala555Thr	p.A555T	ENST00000330684	NM_001134407.1	555	Gcc/Acc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174437	11174437	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			105	21	308	0	ENST00000361445.4:c.7238G>T	p.Ser2413Ile	p.S2413I	ENST00000361445	NM_004958.3	2413	aGt/aTt																																																																															
BTK	695	MSKCC	GRCh37	X	100611203	100611203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			37	22	188	0	ENST00000308731.7:c.1403G>A	p.Arg468His	p.R468H	ENST00000308731	NM_000061.2	468	cGc/cAc																																																																															
CDKN2B-AS1	100048912	MSKCC	GRCh37	9	21994279	21994279	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			173	56	328	0				ENST00000428597																																																																																		
RECQL4	9401	MSKCC	GRCh37	8	145741410	145741410	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1220847881		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			245	22	509	0	ENST00000428558.2:c.1093C>T	p.Arg365Trp	p.R365W	ENST00000428558	NM_004260.3	365	Cgg/Tgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540374	187540374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370340394		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			163	53	404	0	ENST00000441802.2:c.7366G>A	p.Ala2456Thr	p.A2456T	ENST00000441802	NM_005245.3	2456	Gcc/Acc																																																																															
RAC1	5879	MSKCC	GRCh37	7	6431650	6431650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			120	33	205	0	ENST00000356142.4:c.203G>A	p.Arg68His	p.R68H	ENST00000356142	NM_018890.3	68	cGc/cAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112448	115112448	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1398394014		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			165	26	371	0	ENST00000257566.3:c.1292C>T	p.Ala431Val	p.A431V	ENST00000257566	NM_016569.3	431	gCg/gTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81979857	81979857	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764693069		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			133	27	359	0	ENST00000359376.3:c.3559C>T	p.Arg1187Trp	p.R1187W	ENST00000359376	NM_002661.3	1187	Cgg/Tgg																																																																															
POLE	5426	MSKCC	GRCh37	12	133234521	133234521	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs531705054		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			118	30	308	0	ENST00000320574.5:c.3311C>T	p.Thr1104Met	p.T1104M	ENST00000320574	NM_006231.2	1104	aCg/aTg																																																																															
PARP1	142	MSKCC	GRCh37	1	226578316	226578316	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs193238922		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			118	36	343	0	ENST00000366794.5:c.412C>T	p.Arg138Cys	p.R138C	ENST00000366794	NM_001618.3	138	Cgc/Tgc																																																																															
TET2	54790	MSKCC	GRCh37	4	106197299	106197299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			121	30	392	0	ENST00000380013.4:c.5632C>T	p.Arg1878Cys	p.R1878C	ENST00000380013	NM_001127208.2	1878	Cgt/Tgt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470548	25470548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			150	36	451	0	ENST00000264709.3:c.926G>A	p.Arg309His	p.R309H	ENST00000264709	NM_175629.2	309	cGc/cAc																																																																															
LYN	4067	MSKCC	GRCh37	8	56864653	56864653	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759824481		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			183	50	333	0	ENST00000519728.1:c.616G>A	p.Asp206Asn	p.D206N	ENST00000519728	NM_002350.3	206	Gac/Aac																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091792	29091793	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			91	33	222	0	ENST00000328354.6:c.1164dup	p.Thr389HisfsTer6	p.T389Hfs*6	ENST00000328354	NM_007194.3	388	-/C																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151841899	151841899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773125481		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			176	39	402	0	ENST00000262189.6:c.14242G>A	p.Ala4748Thr	p.A4748T	ENST00000262189	NM_170606.2	4748	Gca/Aca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16263715	16263715	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			200	48	467	0	ENST00000375759.3:c.10084C>T	p.Pro3362Ser	p.P3362S	ENST00000375759	NM_015001.2	3362	Cct/Tct																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342634	118342634	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			132	22	405	0	ENST00000534358.1:c.766del	p.Ile256LeufsTer18	p.I256Lfs*18	ENST00000534358	NM_005933.3	254	Aaa/aa																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589630	69589630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			96	20	602	0	ENST00000168712.1:c.223G>A	p.Asp75Asn	p.D75N	ENST00000168712	NM_002007.2	75	Gac/Aac																																																																															
MSI1	4440	MSKCC	GRCh37	12	120783422	120783422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			85	20	337	0	ENST00000257552.2:c.1061C>T	p.Ala354Val	p.A354V	ENST00000257552	NM_002442.3	354	gCc/gTc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56839444	56839444	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747730206		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			145	38	408	0	ENST00000308159.5:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000308159	NM_014669.4	130	cGg/cAg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910352	50910352	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779735891		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			110	33	376	0	ENST00000440232.2:c.1607C>T	p.Ala536Val	p.A536V	ENST00000440232	NM_002691.3	536	gCg/gTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18691218	18691218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			87	28	276	0	ENST00000266497.5:c.3329G>A	p.Ser1110Asn	p.S1110N	ENST00000266497		1110	aGc/aAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435480	110435480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			199	64	381	1	ENST00000375856.3:c.2921C>T	p.Pro974Leu	p.P974L	ENST00000375856	NM_003749.2	974	cCg/cTg																																																																															
CCND1	595	MSKCC	GRCh37	11	69465885	69465885	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			139	32	401	0	ENST00000227507.2:c.724-1G>T		p.X242_splice	ENST00000227507	NM_053056.2	242																																																																																
BRD4	23476	MSKCC	GRCh37	19	15350292	15350292	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755543448		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			122	21	402	2	ENST00000263377.2:c.3487C>T	p.Arg1163Trp	p.R1163W	ENST00000263377	NM_058243.2	1163	Cgg/Tgg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12043874	12043874	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			172	18	314	0	ENST00000396373.4:c.1254-1G>T		p.X418_splice	ENST00000396373	NM_001987.4	418																																																																																
HIST1H3E	8353	MSKCC	GRCh37	6	26225789	26225789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			346	95	416	0	ENST00000360408.1:c.407C>T	p.Ala136Val	p.A136V	ENST00000360408	NM_003532.2	136	gCg/gTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984460	72984460	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			122	27	386	0	ENST00000268489.5:c.3124T>C	p.Cys1042Arg	p.C1042R	ENST00000268489	NM_006885.3	1042	Tgc/Cgc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63965731	63965731	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1229074476		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			285	23	441	0	ENST00000295900.6:c.640G>A	p.Ala214Thr	p.A214T	ENST00000295900	NM_000333.3	214	Gca/Aca																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416822	121416822	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			186	16	444	0	ENST00000257555.6:c.251C>A	p.Pro84His	p.P84H	ENST00000257555		84	cCc/cAc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643813	38643813	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369492789		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			184	41	389	0	ENST00000299084.4:c.1283G>A	p.Arg428His	p.R428H	ENST00000299084	NM_152594.2	428	cGc/cAc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027917	48027917	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786203914		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			134	29	337	0	ENST00000234420.5:c.2795G>A	p.Gly932Asp	p.G932D	ENST00000234420	NM_000179.2	932	gGc/gAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227870	36227870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			148	42	428	0	ENST00000222270.7:c.7355G>A	p.Arg2452Lys	p.R2452K	ENST00000222270	NM_014727.1	2452	aGa/aAa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5240332	5240332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			104	16	310	0	ENST00000357368.4:c.1582C>T	p.Pro528Ser	p.P528S	ENST00000357368	NM_002850.3	528	Ccc/Tcc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251216	99251216	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			151	34	419	0	ENST00000268035.6:c.524del	p.Pro175GlnfsTer75	p.P175Qfs*75	ENST00000268035	NM_000875.3	174	Ccc/cc																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68934952	68934952	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			291	83	338	0	ENST00000487270.1:c.1021G>T	p.Gly341Cys	p.G341C	ENST00000487270	NM_133509.3	341	Ggc/Tgc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347360	89347360	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs576333338		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			115	23	452	0	ENST00000301030.4:c.5590G>A	p.Ala1864Thr	p.A1864T	ENST00000301030	NM_001256183.1	1864	Gct/Act																																																																															
STAG2	10735	MSKCC	GRCh37	X	123195087	123195087	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			40	34	132	0	ENST00000218089.9:c.1430C>A	p.Ala477Glu	p.A477E	ENST00000218089	NM_001042749.1	477	gCa/gAa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144017	11144017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			168	36	419	0	ENST00000344626.4:c.3598C>T	p.Arg1200Cys	p.R1200C	ENST00000344626	NM_003072.3	1200	Cgt/Tgt																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626459	12626459	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			147	39	497	0	ENST00000251849.4:c.1690G>T	p.Gly564Ter	p.G564*	ENST00000251849	NM_002880.3	564	Gga/Tga																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2033070	2033070	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1218358072		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			176	35	366	1	ENST00000349721.2:c.344A>G	p.Gln115Arg	p.Q115R	ENST00000349721	NM_003070.3	115	cAa/cGa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466477	120466477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			127	25	378	0	ENST00000256646.2:c.4642G>A	p.Val1548Ile	p.V1548I	ENST00000256646	NM_024408.3	1548	Gtt/Att																																																																															
EP300	2033	MSKCC	GRCh37	22	41545841	41545841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			187	10	406	0	ENST00000263253.7:c.2456G>T	p.Cys819Phe	p.C819F	ENST00000263253	NM_001429.3	819	tGt/tTt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52723485	52723485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			114	35	331	0	ENST00000322088.6:c.1346C>T	p.Ala449Val	p.A449V	ENST00000322088	NM_014225.5	449	gCc/gTc																																																																															
STK40	83931	MSKCC	GRCh37	1	36808991	36808991	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			147	30	340	0	ENST00000373129.3:c.1063A>C	p.Met355Leu	p.M355L	ENST00000373129	NM_032017.1	355	Atg/Ctg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967276	25967276	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs199812861		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			179	45	403	0	ENST00000435504.4:c.1930G>T	p.Val644Phe	p.V644F	ENST00000435504		644	Gtc/Ttc																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127920642	127920642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			64	25	256	0	ENST00000373547.4:c.257G>A	p.Gly86Asp	p.G86D	ENST00000373547	NM_002721.4	86	gGt/gAt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658497	3658497	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			187	45	396	0	ENST00000294008.3:c.469G>T	p.Ala157Ser	p.A157S	ENST00000294008	NM_032444.2	157	Gca/Tca																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156666	55156666	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			133	31	384	0	ENST00000257290.5:c.3067C>A	p.Pro1023Thr	p.P1023T	ENST00000257290	NM_006206.4	1023	Cct/Act																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805413	32805413	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			228	34	361	0	ENST00000374899.4:c.509C>A	p.Pro170His	p.P170H	ENST00000374899	NM_018833.2	170	cCt/cAt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434526	110434526	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			152	49	333	0	ENST00000375856.3:c.3875del	p.Gly1292ValfsTer39	p.G1292Vfs*39	ENST00000375856	NM_003749.2	1292	gGt/gt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87359933	87359933	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			136	36	307	0	ENST00000277120.3:c.1241G>T	p.Ser414Ile	p.S414I	ENST00000277120		414	aGt/aTt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942210	17942210	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			123	44	294	0	ENST00000458235.1:c.2806-1G>T		p.X936_splice	ENST00000458235	NM_000215.3	936																																																																																
DNMT3B	1789	MSKCC	GRCh37	20	31379507	31379507	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			64	23	284	0	ENST00000328111.2:c.914C>A	p.Ala305Asp	p.A305D	ENST00000328111	NM_006892.3	305	gCt/gAt																																																																															
WT1	7490	MSKCC	GRCh37	11	32456805	32456805	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			114	11	288	0	ENST00000332351.3:c.87G>T	p.Glu29Asp	p.E29D	ENST00000332351	NM_024426.4	29	gaG/gaT																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375304	15375304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			109	50	391	0	ENST00000263377.2:c.1123C>T	p.Pro375Ser	p.P375S	ENST00000263377	NM_058243.2	375	Ccc/Tcc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106734	27106734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			214	53	472	0	ENST00000324856.7:c.6345G>T	p.Gln2115His	p.Q2115H	ENST00000324856	NM_006015.4	2115	caG/caT																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712916	43712916	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			111	29	404	0	ENST00000382044.4:c.4268G>T	p.Gly1423Val	p.G1423V	ENST00000382044	NM_001141980.1	1423	gGc/gTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535417	66535417	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			64	11	356	0	ENST00000273854.3:c.44del	p.Pro15GlnfsTer47	p.P15Qfs*47	ENST00000273854	NM_004439.5	15	cCa/ca																																																																															
EZH1	2145	MSKCC	GRCh37	17	40874853	40874853	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			91	32	315	0	ENST00000428826.2:c.447G>T	p.Glu149Asp	p.E149D	ENST00000428826		149	gaG/gaT																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953238	17953238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			140	25	349	0	ENST00000458235.1:c.748G>T	p.Ala250Ser	p.A250S	ENST00000458235	NM_000215.3	250	Gcc/Tcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420985	49420985	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			131	27	307	0	ENST00000301067.7:c.14764G>T	p.Ala4922Ser	p.A4922S	ENST00000301067	NM_003482.3	4922	Gca/Tca																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33680000	33680000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			136	17	337	0	ENST00000308377.4:c.2081G>A	p.Gly694Asp	p.G694D	ENST00000308377	NM_152270.3	694	gGc/gAc																																																																															
CD274	29126	MSKCC	GRCh37	9	5457326	5457326	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			189	46	407	0	ENST00000381577.3:c.300G>T	p.Gln100His	p.Q100H	ENST00000381577	NM_014143.3	100	caG/caT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513013	106513013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			155	23	340	0	ENST00000359195.3:c.2027C>T	p.Ala676Val	p.A676V	ENST00000359195	NM_002649.2	676	gCc/gTc																																																																															
TP63	8626	MSKCC	GRCh37	3	189612057	189612057	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			192	32	404	0	ENST00000264731.3:c.1809C>A	p.Asp603Glu	p.D603E	ENST00000264731	NM_003722.4	603	gaC/gaA																																																																															
BRAF	673	MSKCC	GRCh37	7	140534639	140534639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			101	16	315	0	ENST00000288602.6:c.274C>T	p.Leu92Phe	p.L92F	ENST00000288602	NM_004333.4	92	Ctc/Ttc																																																																															
CDKN2B-AS1	100048912	MSKCC	GRCh37	9	21994237	21994237	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			223	31	355	0				ENST00000428597																																																																																		
MTOR	2475	MSKCC	GRCh37	1	11186767	11186767	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			133	30	381	0	ENST00000361445.4:c.6438del	p.Asn2147ThrfsTer10	p.N2147Tfs*10	ENST00000361445	NM_004958.3	2146	ccC/cc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46271112	46271112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			109	34	292	0	ENST00000371998.3:c.3236C>A	p.Pro1079His	p.P1079H	ENST00000371998		1079	cCt/cAt																																																																															
TOP1	7150	MSKCC	GRCh37	20	39713113	39713114	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			151	32	274	0	ENST00000361337.2:c.525dup	p.Pro176ThrfsTer4	p.P176Tfs*4	ENST00000361337	NM_003286.2	173	-/A																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149440495	149440495	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			136	36	344	0	ENST00000286301.3:c.1899G>T	p.Glu633Asp	p.E633D	ENST00000286301	NM_005211.3	633	gaG/gaT																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430804	181430804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			144	11	520	0	ENST00000325404.1:c.656G>A	p.Gly219Asp	p.G219D	ENST00000325404	NM_003106.3	219	gGc/gAc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131927711	131927711	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			114	11	262	0	ENST00000265335.6:c.1778G>T	p.Arg593Ile	p.R593I	ENST00000265335		593	aGa/aTa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107697	30107697	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			209	15	378	0	ENST00000331968.5:c.983G>A	p.Gly328Glu	p.G328E	ENST00000331968	NM_002742.2	328	gGa/gAa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30105602	30105602	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			172	46	417	0	ENST00000331968.5:c.1084G>T	p.Glu362Ter	p.E362*	ENST00000331968	NM_002742.2	362	Gaa/Taa																																																																															
CD276	80381	MSKCC	GRCh37	15	73994612	73994612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			78	33	423	0	ENST00000318443.5:c.96G>T	p.Gln32His	p.Q32H	ENST00000318443	NM_001024736.1	32	caG/caT																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799934	72799934	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			156	40	325	0	ENST00000325599.8:c.1235A>C	p.Lys412Thr	p.K412T	ENST00000325599	NM_018130.2	412	aAg/aCg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541769	187541770	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs1476611383		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			181	57	449	0	ENST00000441802.2:c.5970_5971del	p.Asn1991PhefsTer19	p.N1991Ffs*19	ENST00000441802	NM_005245.3	1990	gaGAat/gaat																																																																															
MSH3	4437	MSKCC	GRCh37	5	80063754	80063754	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			69	26	236	0	ENST00000265081.6:c.1899T>G	p.Cys633Trp	p.C633W	ENST00000265081	NM_002439.4	633	tgT/tgG																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540932	187540932	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200538725		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			135	66	440	0	ENST00000441802.2:c.6808G>A	p.Asp2270Asn	p.D2270N	ENST00000441802	NM_005245.3	2270	Gac/Aac																																																																															
IDH1	3417	MSKCC	GRCh37	2	209104668	209104668	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			104	25	328	0	ENST00000345146.2:c.910G>T	p.Glu304Ter	p.E304*	ENST00000345146	NM_005896.2	304	Gaa/Taa																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119545644	119545644	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			139	36	302	0	ENST00000316626.5:c.1293C>A	p.Asn431Lys	p.N431K	ENST00000316626		431	aaC/aaA																																																																															
SETD8	387893	MSKCC	GRCh37	12	123880969	123880969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			153	27	257	0	ENST00000330479.4:c.587C>T	p.Ala196Val	p.A196V	ENST00000330479	NM_020382.3	196	gCc/gTc																																																																															
IDH1	3417	MSKCC	GRCh37	2	209103816	209103816	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766246232		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			78	27	315	0	ENST00000345146.2:c.1133C>T	p.Ala378Val	p.A378V	ENST00000345146	NM_005896.2	378	gCt/gTt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479741	67479741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			173	42	335	0	ENST00000327367.4:c.1048G>T	p.Ala350Ser	p.A350S	ENST00000327367	NM_005902.3	350	Gcc/Tcc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983071	201983071	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149305892		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			205	92	404	0	ENST00000359651.3:c.920G>A	p.Arg307His	p.R307H	ENST00000359651		307	cGc/cAc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288329	33288329	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762419626		P-0072189-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			309	101	405	0	ENST00000374542.5:c.1079G>A	p.Arg360His	p.R360H	ENST00000374542	NM_001141970.1	360	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0072218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	12	391	1	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0072218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	11	309	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0072223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	184	494	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519896		P-0072223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	126	415	0	ENST00000281708.4:c.1514G>T	p.Arg505Leu	p.R505L	ENST00000281708	NM_033632.3	505	cGc/cTc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280815	41280815	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0072223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	184	492	0	ENST00000349496.5:c.2328G>A	p.Trp776Ter	p.W776*	ENST00000349496	NM_001904.3	776	tgG/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0072223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	135	258	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175416	112175426	+	frameshift_variant	Frame_Shift_Del	DEL	CTATGTTCAGG	CTATGTTCAGG	-			P-0072223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	95	458	0	ENST00000257430.4:c.4125_4135del	p.His1375GlnfsTer7	p.H1375Qfs*7	ENST00000257430	NM_000038.5	1375	caCTATGTTCAGGag/caag																																																																															
APC	324	MSKCC	GRCh37	5	112162854	112162854	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	CG			P-0072223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	192	373	0	ENST00000257430.4:c.1458delinsCG	p.Leu488AlafsTer3	p.L488Afs*3	ENST00000257430	NM_000038.5	486	taT/taCG																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	266	359	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120196	70120196	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	445	487	0	ENST00000245479.2:c.1198G>T	p.Glu400Ter	p.E400*	ENST00000245479	NM_000346.3	400	Gag/Tag																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38944623	38944623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	70	244	0	ENST00000357387.3:c.4838G>A	p.Arg1613His	p.R1613H	ENST00000357387	NM_152756.3	1613	cGc/cAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929048	32929048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	213	399	0	ENST00000380152.3:c.7058G>T	p.Gly2353Val	p.G2353V	ENST00000380152		2353	gGt/gTt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907164	101907164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	82	263	0	ENST00000374994.4:c.1124C>A	p.Thr375Lys	p.T375K	ENST00000374994	NM_004612.2	375	aCa/aAa																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139566450	139566450	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370929489		P-0072265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	147	410	0	ENST00000308874.7:c.709G>A	p.Gly237Ser	p.G237S	ENST00000308874		237	Ggc/Agc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15365064	15365064	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0072265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	165	359	0	ENST00000263377.2:c.2057T>G	p.Val686Gly	p.V686G	ENST00000263377	NM_058243.2	686	gTt/gGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0072265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	171	239	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089725	27089725	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			734	224	464	0	ENST00000324856.7:c.2683del	p.Gln895LysfsTer24	p.Q895Kfs*24	ENST00000324856	NM_006015.4	894	aCc/ac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134252	11134252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	47	402	0	ENST00000344626.4:c.2918G>A	p.Arg973Gln	p.R973Q	ENST00000344626	NM_003072.3	973	cGg/cAg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24135767	24135767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	144	433	0	ENST00000263121.7:c.254C>A	p.Ala85Asp	p.A85D	ENST00000263121	NM_003073.3	85	gCc/gAc																																																																															
LMO1	4004	MSKCC	GRCh37	11	8248528	8248528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	148	470	0	ENST00000335790.3:c.359A>C	p.Asn120Thr	p.N120T	ENST00000335790	NM_002315.2	120	aAc/aCc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347218	89347218	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs147009716		P-0072265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			706	197	522	0	ENST00000301030.4:c.5732T>C	p.Leu1911Pro	p.L1911P	ENST00000301030	NM_001256183.1	1911	cTg/cCg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257153	16257153	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0072265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	129	397	0	ENST00000375759.3:c.4418A>T	p.Asn1473Ile	p.N1473I	ENST00000375759	NM_015001.2	1473	aAt/aTt																																																																															
APLNR	187	MSKCC	GRCh37	11	57004313	57004313	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	T	T	G			P-0072265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	167	483	0	ENST00000257254.3:c.166A>C	p.Ser56Arg	p.S56R	ENST00000257254		56	Agc/Cgc																																																																															
NBN	4683	MSKCC	GRCh37	8	90976707	90976710	+	stop_gained	Nonsense_Mutation	DEL	CTGC	CTGC	A			P-0072265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	74	248	0	ENST00000265433.3:c.922_925delinsT	p.Ala308_Glu309delinsTer	p.A308_E309delins*	ENST00000265433	NM_002485.4	308	GCAGaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782620		P-0072299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	342	477	0	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604787	48604787	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	144	399	0	ENST00000342988.3:c.1609G>C	p.Asp537His	p.D537H	ENST00000342988	NM_005359.5	537	Gac/Cac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0072299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	137	202	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KLF5	688	MSKCC	GRCh37	13	73636645	73636647	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0072299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1215	165	567	1	ENST00000377687.4:c.913_915del	p.Pro305del	p.P305del	ENST00000377687	NM_001730.3	303	tCACca/tca																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128030497	128030497	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1200552239		P-0072299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	59	297	0	ENST00000285398.2:c.1771C>T	p.Gln591Ter	p.Q591*	ENST00000285398	NM_000122.1	591	Caa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878213	151878213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			767	200	511	0	ENST00000262189.6:c.6732G>A	p.Met2244Ile	p.M2244I	ENST00000262189	NM_170606.2	2244	atG/atA																																																																															
ATM	472	MSKCC	GRCh37	11	108122572	108122572	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	82	347	0	ENST00000278616.4:c.1616T>C	p.Val539Ala	p.V539A	ENST00000278616	NM_000051.3	539	gTa/gCa																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128030531	128030531	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0072299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	72	288	0	ENST00000285398.2:c.1737T>A	p.Tyr579Ter	p.Y579*	ENST00000285398	NM_000122.1	579	taT/taA																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968105	68968105	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	45	306	0	ENST00000288368.4:c.1134C>G	p.Ile378Met	p.I378M	ENST00000288368	NM_024870.2	378	atC/atG																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163864	32163864	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	129	269	0	ENST00000375023.3:c.5362G>C	p.Gly1788Arg	p.G1788R	ENST00000375023	NM_004557.3	1788	Ggg/Cgg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248047	110248047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	36	338	0	ENST00000374672.4:c.1425G>A	p.Met475Ile	p.M475I	ENST00000374672	NM_004235.4	475	atG/atA																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	106	477	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	47	155	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	98	474	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	137	561	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	108	673	0	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	59	257	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832377	72832377	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759917787		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	90	561	0	ENST00000268489.5:c.4204C>T	p.Arg1402Cys	p.R1402C	ENST00000268489	NM_006885.3	1402	Cgc/Tgc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	83	448	4	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	130	566	8	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038526	47038526	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	100	241	0	ENST00000329236.7:c.457C>T	p.Arg153Ter	p.R153*	ENST00000329236	NM_001204466.1	153	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	76	413	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933704	49933704	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140736052		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	152	577	0	ENST00000296474.3:c.2573G>A	p.Arg858His	p.R858H	ENST00000296474	NM_002447.2	858	cGc/cAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41574133	41574133	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367685222		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	58	526	0	ENST00000263253.7:c.6418G>A	p.Val2140Ile	p.V2140I	ENST00000263253	NM_001429.3	2140	Gtt/Att																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992316	72992316	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62640001		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	119	523	1	ENST00000268489.5:c.1729G>A	p.Val577Ile	p.V577I	ENST00000268489	NM_006885.3	577	Gtc/Atc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741585	17741585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	91	424	0	ENST00000250003.3:c.256G>A	p.Gly86Arg	p.G86R	ENST00000250003	NM_002478.4	86	Ggg/Agg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976703	2976703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	80	472	0	ENST00000396946.4:c.1309C>T	p.Arg437Cys	p.R437C	ENST00000396946	NM_032415.4	437	Cgc/Tgc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31493364	31493364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	79	364	0	ENST00000344624.3:c.1792G>A	p.Glu598Lys	p.E598K	ENST00000344624		598	Gag/Aag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230605	46230605	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1303729294		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	191	430	0	ENST00000334344.6:c.854G>A	p.Arg285Gln	p.R285Q	ENST00000334344	NM_152641.2	285	cGg/cAg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12475550	12475550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1479145908		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	113	475	0	ENST00000287820.6:c.1424C>T	p.Thr475Met	p.T475M	ENST00000287820	NM_015869.4	475	aCg/aTg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17120457	17120457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767714543		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	89	468	1	ENST00000285071.4:c.1102G>A	p.Val368Ile	p.V368I	ENST00000285071	NM_144997.5	368	Gtt/Att																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100133	30100133	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370296777		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	68	397	0	ENST00000331968.5:c.1487C>T	p.Thr496Met	p.T496M	ENST00000331968	NM_002742.2	496	aCg/aTg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656861	45656861	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200561939		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	111	537	0	ENST00000407780.3:c.295C>T	p.Arg99Cys	p.R99C	ENST00000407780	NM_001283052.1	99	Cgc/Tgc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88676897	88676897	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782682		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	73	256	0	ENST00000372037.3:c.682C>T	p.Arg228Ter	p.R228*	ENST00000372037	NM_004329.2	228	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534484	187534484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748020206		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	100	475	0	ENST00000441802.2:c.9242C>T	p.Thr3081Met	p.T3081M	ENST00000441802	NM_005245.3	3081	aCg/aTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864355	57864355	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765569651		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	107	653	1	ENST00000228682.2:c.1832G>A	p.Arg611Gln	p.R611Q	ENST00000228682	NM_005269.2	611	cGg/cAg																																																																															
CBFB	865	MSKCC	GRCh37	16	67070608	67070608	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	82	472	0	ENST00000412916.2:c.232C>T	p.Arg78Ter	p.R78*	ENST00000412916		78	Cga/Tga																																																																															
TET2	54790	MSKCC	GRCh37	4	106158446	106158447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs748419340		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	98	287	0	ENST00000380013.4:c.3353dup	p.Asn1118LysfsTer12	p.N1118Kfs*12	ENST00000380013	NM_001127208.2	1116	ata/atAa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121610	2121610	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45509392		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	55	480	0	ENST00000219476.3:c.1939G>A	p.Asp647Asn	p.D647N	ENST00000219476	NM_000548.3	647	Gac/Aac																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185198262	185198262	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3732576		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	107	522	0	ENST00000265026.3:c.2744G>A	p.Arg915His	p.R915H	ENST00000265026	NM_004721.4	915	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178943755	178943755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200671228		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	56	206	0	ENST00000263967.3:c.2422C>T	p.Arg808Trp	p.R808W	ENST00000263967	NM_006218.2	808	Cgg/Tgg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434510	121434510	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1401743626		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	102	476	0	ENST00000257555.6:c.1274C>T	p.Thr425Met	p.T425M	ENST00000257555		425	aCg/aTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918729	50918729	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367680864		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	82	407	0	ENST00000440232.2:c.2599G>A	p.Val867Ile	p.V867I	ENST00000440232	NM_002691.3	867	Gtc/Atc																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260247	149260247	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs753225952		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	105	587	0	ENST00000360632.3:c.646G>T	p.Ala216Ser	p.A216S	ENST00000360632	NM_015472.4	216	Gca/Tca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023715	27023716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	69	499	0	ENST00000324856.7:c.827dup	p.Gly277ArgfsTer123	p.G277Rfs*123	ENST00000324856	NM_006015.4	274	atg/atGg																																																																															
LMO1	4004	MSKCC	GRCh37	11	8251908	8251908	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763199508		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	92	604	0	ENST00000335790.3:c.169C>T	p.Arg57Cys	p.R57C	ENST00000335790	NM_002315.2	57	Cgc/Tgc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56486587	56486587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	99	442	0	ENST00000267101.3:c.1166C>T	p.Thr389Ile	p.T389I	ENST00000267101	NM_001982.3	389	aCa/aTa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741926	145741926	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs754986197		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	98	523	0	ENST00000428558.2:c.577C>T	p.Arg193Ter	p.R193*	ENST00000428558	NM_004260.3	193	Cga/Tga																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106512998	106512998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	89	413	0	ENST00000359195.3:c.2012C>T	p.Pro671Leu	p.P671L	ENST00000359195	NM_002649.2	671	cCa/cTa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31504699	31504699	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1032572786		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	86	438	0	ENST00000344624.3:c.1631G>A	p.Arg544His	p.R544H	ENST00000344624		544	cGc/cAc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553732	106553732	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	78	530	0	ENST00000369096.4:c.1697T>C	p.Leu566Pro	p.L566P	ENST00000369096	NM_001198.3	566	cTg/cCg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222792	5222792	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754813198		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	39	477	0	ENST00000357368.4:c.3011C>T	p.Thr1004Met	p.T1004M	ENST00000357368	NM_002850.3	1004	aCg/aTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022395	31022395	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1162384519		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	91	576	0	ENST00000375687.4:c.1880C>T	p.Ala627Val	p.A627V	ENST00000375687	NM_015338.5	627	gCg/gTg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30311679	30311679	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372635299		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	76	309	0	ENST00000262643.3:c.533C>T	p.Ala178Val	p.A178V	ENST00000262643	NM_001238.2	178	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112179113	112179113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs878853471		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	84	342	0	ENST00000257430.4:c.7822G>A	p.Ala2608Thr	p.A2608T	ENST00000257430	NM_000038.5	2608	Gca/Aca																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118372447	118372447	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782001089		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	106	459	0	ENST00000534358.1:c.6380G>A	p.Arg2127Gln	p.R2127Q	ENST00000534358	NM_005933.3	2127	cGa/cAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953617	32953617	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80359143		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	66	344	0	ENST00000380152.3:c.8918G>A	p.Arg2973His	p.R2973H	ENST00000380152		2973	cGt/cAt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2130258	2130258	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776579875		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	108	536	0	ENST00000219476.3:c.3490G>A	p.Ala1164Thr	p.A1164T	ENST00000219476	NM_000548.3	1164	Gcg/Acg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128015261	128015261	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779748578		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	73	387	0	ENST00000285398.2:c.2260G>A	p.Asp754Asn	p.D754N	ENST00000285398	NM_000122.1	754	Gac/Aac																																																																															
RAD21	5885	MSKCC	GRCh37	8	117869653	117869653	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1462000579		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	85	304	0	ENST00000297338.2:c.541G>A	p.Asp181Asn	p.D181N	ENST00000297338	NM_006265.2	181	Gac/Aac																																																																															
CTR9	9646	MSKCC	GRCh37	11	10785885	10785885	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	112	477	0	ENST00000361367.2:c.1315C>T	p.Arg439Ter	p.R439*	ENST00000361367	NM_014633.3	439	Cga/Tga																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6213787	6213787	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747024697		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	107	538	1	ENST00000252674.7:c.1429G>A	p.Glu477Lys	p.E477K	ENST00000252674	NM_005934.3	477	Gag/Aag																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38792236	38792236	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762623799		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	92	373	1	ENST00000348513.6:c.488G>A	p.Arg163His	p.R163H	ENST00000348513	NM_003079.4	163	cGc/cAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436209	110436209	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1318843123		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	75	483	0	ENST00000375856.3:c.2192C>T	p.Ser731Leu	p.S731L	ENST00000375856	NM_003749.2	731	tCg/tTg																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38798715	38798715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	74	332	0	ENST00000348513.6:c.148C>T	p.Arg50Trp	p.R50W	ENST00000348513	NM_003079.4	50	Cgg/Tgg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150915098	150915098	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	93	445	0	ENST00000271640.5:c.607C>T	p.Arg203Ter	p.R203*	ENST00000271640	NM_001145415.1	203	Cga/Tga																																																																															
VHL	7428	MSKCC	GRCh37	3	10183795	10183795	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	76	449	0	ENST00000256474.2:c.264G>A	p.Trp88Ter	p.W88*	ENST00000256474	NM_000551.3	88	tgG/tgA																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615822	1615822	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs899345438		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	84	395	0	ENST00000344749.5:c.1451-2A>G		p.X484_splice	ENST00000344749	NM_001136139.2	484																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157527571	157527571	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	101	498	1	ENST00000346085.5:c.5296A>G	p.Thr1766Ala	p.T1766A	ENST00000346085	NM_020732.3	1766	Act/Gct																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792824	33792824	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	69	301	0	ENST00000498907.2:c.497A>G	p.Glu166Gly	p.E166G	ENST00000498907	NM_004364.3	166	gAg/gGg																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222200	6222200	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748081218		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	118	551	0	ENST00000252674.7:c.1042C>T	p.Arg348Trp	p.R348W	ENST00000252674	NM_005934.3	348	Cgg/Tgg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251019	99251019	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	103	465	0	ENST00000268035.6:c.323G>A	p.Gly108Asp	p.G108D	ENST00000268035	NM_000875.3	108	gGc/gAc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962357	2962357	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377658907		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	73	374	0	ENST00000396946.4:c.2180C>T	p.Pro727Leu	p.P727L	ENST00000396946	NM_032415.4	727	cCg/cTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201806	66201806	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	68	422	0	ENST00000273854.3:c.2696G>T	p.Ser899Ile	p.S899I	ENST00000273854	NM_004439.5	899	aGc/aTc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1962843	1962843	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750479519		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	41	445	0	ENST00000382895.3:c.3337G>A	p.Asp1113Asn	p.D1113N	ENST00000382895	NM_133330.2	1113	Gac/Aac																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2194578	2194578	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	45	456	0	ENST00000398665.3:c.651+2T>C		p.X217_splice	ENST00000398665	NM_032482.2	217																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120457973	120457973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	118	548	0	ENST00000256646.2:c.7372C>T	p.His2458Tyr	p.H2458Y	ENST00000256646	NM_024408.3	2458	Cac/Tac																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855546	45855546	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	117	548	0	ENST00000391945.4:c.2111C>A	p.Ala704Asp	p.A704D	ENST00000391945	NM_000400.3	704	gCc/gAc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074277	8074277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	133	471	0	ENST00000377482.5:c.382C>A	p.Pro128Thr	p.P128T	ENST00000377482	NM_018948.3	128	Cct/Act																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53240677	53240677	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	89	196	0	ENST00000375401.3:c.1401+2T>C		p.X467_splice	ENST00000375401	NM_004187.3	467																																																																																
EP300	2033	MSKCC	GRCh37	22	41574455	41574455	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1476701022		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	119	556	0	ENST00000263253.7:c.6740A>G	p.Gln2247Arg	p.Q2247R	ENST00000263253	NM_001429.3	2247	cAg/cGg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798177	32798177	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs766249644		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	108	507	0	ENST00000374899.4:c.1502T>C	p.Leu501Pro	p.L501P	ENST00000374899	NM_018833.2	501	cTg/cCg																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47595343	47595343	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	74	345	0	ENST00000395288.2:c.697-1G>T		p.X233_splice	ENST00000395288	NM_016506.5	233																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118374163	118374163	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183240996		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	110	517	1	ENST00000534358.1:c.7556G>A	p.Arg2519Gln	p.R2519Q	ENST00000534358	NM_005933.3	2519	cGg/cAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411495	63411495	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	88	319	0	ENST00000330258.3:c.1672del	p.Glu558LysfsTer4	p.E558Kfs*4	ENST00000330258	NM_152424.3	558	Gaa/aa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640890	3640890	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148428054		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	98	587	0	ENST00000294008.3:c.2749G>A	p.Ala917Thr	p.A917T	ENST00000294008	NM_032444.2	917	Gcc/Acc																																																																															
CIC	23152	MSKCC	GRCh37	19	42794893	42794893	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	46	543	0	ENST00000575354.2:c.1973G>T	p.Gly658Val	p.G658V	ENST00000575354	NM_015125.3	658	gGg/gTg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78867581	78867581	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs973974543		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	105	481	0	ENST00000306801.3:c.2317G>A	p.Glu773Lys	p.E773K	ENST00000306801	NM_020761.2	773	Gag/Aag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99478188	99478188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	95	498	0	ENST00000268035.6:c.3092C>T	p.Ala1031Val	p.A1031V	ENST00000268035	NM_000875.3	1031	gCc/gTc																																																																															
RET	5979	MSKCC	GRCh37	10	43572764	43572764	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1205904653		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	70	318	0	ENST00000355710.3:c.58C>T	p.Pro20Ser	p.P20S	ENST00000355710	NM_020975.4	20	Ccg/Tcg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144011	11144011	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755541709		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	38	487	0	ENST00000344626.4:c.3592G>A	p.Glu1198Lys	p.E1198K	ENST00000344626	NM_003072.3	1198	Gag/Aag																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775768	9775768	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776273008		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	107	531	0	ENST00000377346.4:c.311G>A	p.Arg104His	p.R104H	ENST00000377346	NM_005026.3	104	cGt/cAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390656	139390656	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	122	592	0	ENST00000277541.6:c.7535C>A	p.Pro2512Gln	p.P2512Q	ENST00000277541	NM_017617.3	2512	cCg/cAg																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073407	8073407	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	112	520	0	ENST00000377482.5:c.1252A>C	p.Asn418His	p.N418H	ENST00000377482	NM_018948.3	418	Aat/Cat																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943672	17943672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	140	624	0	ENST00000458235.1:c.2417C>T	p.Ala806Val	p.A806V	ENST00000458235	NM_000215.3	806	gCc/gTc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572200	64572200	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1450318836		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	110	513	0	ENST00000337652.1:c.1454G>A	p.Arg485Gln	p.R485Q	ENST00000337652	NM_130803.2	485	cGg/cAg																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231483670	231483670	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs149759874		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	70	346	0	ENST00000295050.7:c.449C>T	p.Thr150Met	p.T150M	ENST00000295050	NM_032018.5	150	aCg/aTg																																																																															
TRIP13	9319	MSKCC	GRCh37	5	907249	907249	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs767260137		P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	92	342	0	ENST00000166345.3:c.613C>T	p.Arg205Ter	p.R205*	ENST00000166345	NM_004237.3	205	Cga/Tga																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821057	32821057	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	26	529	0	ENST00000354258.4:c.537G>A	p.Trp179Ter	p.W179*	ENST00000354258	NM_000593.5	179	tgG/tgA																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988510	36988510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	110	545	0	ENST00000354822.5:c.143G>T	p.Ser48Ile	p.S48I	ENST00000354822	NM_001079668.2	48	aGt/aTt																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503592	47503592	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	70	388	0	ENST00000404338.3:c.4147A>G	p.Ser1383Gly	p.S1383G	ENST00000404338	NM_004491.4	1383	Agc/Ggc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0072308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	114	235	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0072308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	290	636	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	209	457	1	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
APC	324	MSKCC	GRCh37	5	112175606	112175606	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	246	580	0	ENST00000257430.4:c.4316del	p.Pro1439LeufsTer34	p.P1439Lfs*34	ENST00000257430	NM_000038.5	1439	Cct/ct																																																																															
STAT3	6774	MSKCC	GRCh37	17	40476986	40476986	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	241	545	0	ENST00000264657.5:c.1459C>A	p.Pro487Thr	p.P487T	ENST00000264657	NM_139276.2	487	Ccc/Acc																																																																															
REST	5978	MSKCC	GRCh37	4	57777664	57777665	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	45	361	0	ENST00000309042.7:c.866dup	p.Asn289LysfsTer8	p.N289Kfs*8	ENST00000309042	NM_005612.4	287	aga/agAa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396726	396726	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	211	496	0	ENST00000262320.3:c.300C>G	p.Ser100Arg	p.S100R	ENST00000262320	NM_003502.3	100	agC/agG																																																																															
NF1	4763	MSKCC	GRCh37	17	29528124	29528124	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	158	312	0	ENST00000358273.4:c.1132G>T	p.Asp378Tyr	p.D378Y	ENST00000358273	NM_001042492.2	378	Gac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0072310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	27	212	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	100	421	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc																																																																															
ATM	472	MSKCC	GRCh37	11	108218089	108218089	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587779874		P-0072310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			107	39	224	0	ENST00000278616.4:c.8668C>G	p.Leu2890Val	p.L2890V	ENST00000278616	NM_000051.3	2890	Cta/Gta																																																																															
ATM	472	MSKCC	GRCh37	11	108121531	108121531	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779815		P-0072310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	50	426	0	ENST00000278616.4:c.1339C>T	p.Arg447Ter	p.R447*	ENST00000278616	NM_000051.3	447	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0072310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	65	296	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911644	114911644	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0072310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	153	324	0	ENST00000543371.1:c.1161+1G>T		p.X387_splice	ENST00000543371	NM_001198531.1	387																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48593412	48593412	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0072310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	129	364	0	ENST00000342988.3:c.1163A>C	p.Gln388Pro	p.Q388P	ENST00000342988	NM_005359.5	388	cAg/cCg																																																																															
ALK	238	MSKCC	GRCh37	2	29420439	29420439	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	92	434	0	ENST00000389048.3:c.4042A>C	p.Met1348Leu	p.M1348L	ENST00000389048	NM_004304.4	1348	Atg/Ctg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589603	67589604	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTCAAGAAAAAAGTCGAGAATATGATA			P-0072310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	32	205	0	ENST00000274335.5:c.1367_1393dup	p.Asp464_Arg465insIleGlnGluLysSerArgGluTyrAsp	p.D464_R465insIQEKSREYD	ENST00000274335		456	ttt/tTTCAAGAAAAAAGTCGAGAATATGATAtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0072383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	187	349	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0072383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	50	162	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175349	112175350	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0072383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	139	329	0	ENST00000257430.4:c.4058_4059del	p.Glu1353ValfsTer21	p.E1353Vfs*21	ENST00000257430	NM_000038.5	1353	gAA/g																																																																															
NRAS	4893	MSKCC	GRCh37	1	115252267	115252267	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	35	301	0	ENST00000369535.4:c.373G>T	p.Val125Phe	p.V125F	ENST00000369535	NM_002524.4	125	Gtt/Ttt																																																																															
CTR9	9646	MSKCC	GRCh37	11	10800422	10800422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	44	359	0	ENST00000361367.2:c.3292G>T	p.Gly1098Cys	p.G1098C	ENST00000361367	NM_014633.3	1098	Ggt/Tgt																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61305279	61305279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	26	103	0	ENST00000341074.5:c.847C>A	p.His283Asn	p.H283N	ENST00000341074	NM_002974.2	283	Cac/Aac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0072402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	91	177	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	78	320	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476310	88476310	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760692815		P-0072402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	63	312	0	ENST00000360948.2:c.1822G>A	p.Gly608Ser	p.G608S	ENST00000360948	NM_001012338.2	608	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0072402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	69	214	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410450	139410450	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1218640363		P-0072402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	69	290	0	ENST00000277541.6:c.1652C>T	p.Thr551Ile	p.T551I	ENST00000277541	NM_017617.3	551	aCc/aTc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0072404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	94	333	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0072404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	207	368	0	ENST00000257430.4:c.4393_4394dup	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0072404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	206	342	0	ENST00000269305.4:c.838A>T	p.Arg280Ter	p.R280*	ENST00000269305	NM_001126112.2	280	Aga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411504	63411504	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0072404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	188	210	0	ENST00000330258.3:c.1663G>T	p.Glu555Ter	p.E555*	ENST00000330258	NM_152424.3	555	Gag/Tag																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88681384	88681395	+	inframe_deletion	In_Frame_Del	DEL	ACATCATGGCTG	ACATCATGGCTG	-			P-0072404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	43	62	0	ENST00000372037.3:c.1279_1290del	p.Met427_Ile430del	p.M427_I430del	ENST00000372037	NM_004329.2	425	tACATCATGGCTGac/tac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023501	27023517	+	frameshift_variant	Frame_Shift_Del	DEL	CACGACCACGGCTTCCC	CACGACCACGGCTTCCC	-			P-0072404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	76	278	0	ENST00000324856.7:c.609_625del	p.His203GlnfsTer191	p.H203Qfs*191	ENST00000324856	NM_006015.4	203	CACGACCACGGCTTCCCc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7579584	7579585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0072405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	182	485	0	ENST00000269305.4:c.102dup	p.Pro36AlafsTer7	p.P36Afs*7	ENST00000269305	NM_001126112.2	34	-/C																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0072405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	84	361	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7990615	7990615	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs143526675		P-0072405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	80	209	0	ENST00000319144.4:c.146C>T	p.Ala49Val	p.A49V	ENST00000319144	NM_001139.2	49	gCg/gTg																																																																															
ATR	545	MSKCC	GRCh37	3	142177876	142177876	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777776233		P-0072405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	68	332	0	ENST00000350721.4:c.7427G>A	p.Arg2476His	p.R2476H	ENST00000350721	NM_001184.3	2476	cGt/cAt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155301	185155301	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140999720		P-0072405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	186	466	0	ENST00000265026.3:c.542C>T	p.Ala181Val	p.A181V	ENST00000265026	NM_004721.4	181	gCg/gTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119004	70119005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	206	561	0	ENST00000245479.2:c.577dup	p.Thr193AsnfsTer59	p.T193Nfs*59	ENST00000245479	NM_000346.3	192	-/A																																																																															
DICER1	23405	MSKCC	GRCh37	14	95596408	95596408	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775207591		P-0072405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	57	258	0	ENST00000343455.3:c.560G>A	p.Arg187Gln	p.R187Q	ENST00000343455	NM_177438.2	187	cGa/cAa																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21347174	21347174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	139	474	0	ENST00000215739.8:c.1241G>A	p.Gly414Glu	p.G414E	ENST00000215739	NM_006767.3	414	gGg/gAg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731092	162731092	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0072405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	43	475	0	ENST00000367921.3:c.947A>T	p.Asn316Ile	p.N316I	ENST00000367921	NM_006182.2	316	aAt/aTt																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27777978	27777978	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	44	585	0	ENST00000369163.2:c.127del	p.Arg43GlyfsTer20	p.R43Gfs*20	ENST00000369163	NM_003536.2	43	Cgg/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			161	14	95	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
CUL3	8452	MSKCC	GRCh37	2	225362541	225362541	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs767240461		P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			352	27	214	0	ENST00000264414.4:c.1636C>T	p.Arg546Ter	p.R546*	ENST00000264414	NM_003590.4	546	Cga/Tga																																																																															
CDH1	999	MSKCC	GRCh37	16	68844247	68844247	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			315	46	269	0	ENST00000261769.5:c.832+3A>G		p.X278_splice	ENST00000261769	NM_004360.3	278																																																																																
AMER1	139285	MSKCC	GRCh37	X	63412088	63412088	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs943717871		P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			622	38	663	0	ENST00000330258.3:c.1079C>T	p.Ser360Phe	p.S360F	ENST00000330258	NM_152424.3	360	tCc/tTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268968	55268968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			624	60	627	0	ENST00000275493.2:c.3034G>T	p.Asp1012Tyr	p.D1012Y	ENST00000275493	NM_005228.3	1012	Gat/Tat																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643799	38643799	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			551	40	440	0	ENST00000299084.4:c.1269G>C	p.Leu423Phe	p.L423F	ENST00000299084	NM_152594.2	423	ttG/ttC																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71096213	71096213	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			499	48	436	0	ENST00000318789.4:c.544C>T	p.Gln182Ter	p.Q182*	ENST00000318789	NM_032682.5	182	Cag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42059200	42059200	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1423994019		P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			665	90	609	0	ENST00000219905.7:c.8920G>C	p.Glu2974Gln	p.E2974Q	ENST00000219905	NM_001164273.1	2974	Gag/Cag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993096	72993096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			551	43	496	0	ENST00000268489.5:c.949C>G	p.Leu317Val	p.L317V	ENST00000268489	NM_006885.3	317	Ctt/Gtt																																																																															
APC	324	MSKCC	GRCh37	5	112173313	112173313	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	45	179	0	ENST00000257430.4:c.2022G>C	p.Leu674Phe	p.L674F	ENST00000257430	NM_000038.5	674	ttG/ttC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972405	32972405	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			415	43	281	0	ENST00000380152.3:c.9755C>G	p.Ser3252Cys	p.S3252C	ENST00000380152		3252	tCt/tGt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37083790	37083790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			305	38	153	0	ENST00000231790.2:c.1699G>A	p.Asp567Asn	p.D567N	ENST00000231790	NM_000249.3	567	Gat/Aat																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158513	26158513	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			618	46	608	0	ENST00000289316.2:c.116C>A	p.Ser39Ter	p.S39*	ENST00000289316	NM_138720.2	39	tCa/tAa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891340	101891340	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	32	210	0	ENST00000374994.4:c.301T>A	p.Cys101Ser	p.C101S	ENST00000374994	NM_004612.2	101	Tgc/Agc																																																																															
EP300	2033	MSKCC	GRCh37	22	41573514	41573514	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			567	68	601	0	ENST00000263253.7:c.5799G>C	p.Gln1933His	p.Q1933H	ENST00000263253	NM_001429.3	1933	caG/caC																																																																															
SDHD	6392	MSKCC	GRCh37	11	111965609	111965609	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			75	13	36	0	ENST00000375549.3:c.395C>A	p.Ser132Ter	p.S132*	ENST00000375549	NM_003002.3	132	tCa/tAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163484	47163484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			422	47	206	0	ENST00000409792.3:c.2642C>T	p.Ser881Leu	p.S881L	ENST00000409792	NM_014159.6	881	tCa/tTa																																																																															
INSR	3643	MSKCC	GRCh37	19	7117311	7117311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			524	53	590	0	ENST00000302850.5:c.3905C>T	p.Ser1302Leu	p.S1302L	ENST00000302850	NM_000208.2	1302	tCg/tTg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554647	63554647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			635	44	664	0	ENST00000307078.5:c.92G>A	p.Gly31Glu	p.G31E	ENST00000307078	NM_004655.3	31	gGg/gAg																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158619	26158619	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1358692800		P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			285	26	253	0	ENST00000289316.2:c.222C>G	p.Ile74Met	p.I74M	ENST00000289316	NM_138720.2	74	atC/atG																																																																															
APLNR	187	MSKCC	GRCh37	11	57004249	57004249	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs761594364		P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			603	46	619	0	ENST00000257254.3:c.230C>T	p.Thr77Ile	p.T77I	ENST00000257254		77	aCc/aTc																																																																															
MGA	23269	MSKCC	GRCh37	15	42040969	42040969	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			561	80	408	0	ENST00000219905.7:c.5347C>G	p.Gln1783Glu	p.Q1783E	ENST00000219905	NM_001164273.1	1783	Cag/Gag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495579	56495579	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1428910114		P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			673	70	679	0	ENST00000267101.3:c.3769G>C	p.Asp1257His	p.D1257H	ENST00000267101	NM_001982.3	1257	Gat/Cat																																																																															
CUL3	8452	MSKCC	GRCh37	2	225346764	225346764	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			300	36	190	0	ENST00000264414.4:c.1874G>C	p.Arg625Thr	p.R625T	ENST00000264414	NM_003590.4	625	aGa/aCa																																																																															
CDK6	1021	MSKCC	GRCh37	7	92404122	92404122	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1230938672		P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			454	46	234	0	ENST00000265734.4:c.257C>T	p.Ser86Leu	p.S86L	ENST00000265734	NM_001259.6	86	tCa/tTa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163139	47163139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	37	194	0	ENST00000409792.3:c.2987C>T	p.Ser996Leu	p.S996L	ENST00000409792	NM_014159.6	996	tCa/tTa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031885	26031885	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072430-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			581	32	497	0	ENST00000244661.2:c.404G>C	p.Arg135Thr	p.R135T	ENST00000244661	NM_003537.3	135	aGa/aCa																																																																															
POLE	5426	MSKCC	GRCh37	12	133225573	133225573	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369171111		P-0072478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	193	467	0	ENST00000320574.5:c.4091G>A	p.Arg1364His	p.R1364H	ENST00000320574	NM_006231.2	1364	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs863223300		P-0072478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	232	463	0	ENST00000269305.4:c.532del	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac																																																																															
BARD1	580	MSKCC	GRCh37	2	215645489	215645489	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730881416		P-0072478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	67	384	0	ENST00000260947.4:c.1109G>A	p.Arg370His	p.R370H	ENST00000260947	NM_000465.2	370	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112174438	112174442	+	frameshift_variant	Frame_Shift_Del	DEL	GGCAA	GGCAA	-			P-0072478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	128	421	0	ENST00000257430.4:c.3148_3152del	p.Ala1050ThrfsTer8	p.A1050Tfs*8	ENST00000257430	NM_000038.5	1049	tgGGCAAga/tgga																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0072479-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	28	344	1	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578213	7578213	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs864309495		P-0072479-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	42	429	0	ENST00000269305.4:c.636del	p.Arg213AspfsTer34	p.R213Dfs*34	ENST00000269305	NM_001126112.2	212	ttT/tt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0072480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	101	320	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0072480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	69	449	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
ALK	238	MSKCC	GRCh37	2	29443576	29443576	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750194005		P-0072480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	95	410	0	ENST00000389048.3:c.3641G>A	p.Arg1214His	p.R1214H	ENST00000389048	NM_004304.4	1214	cGc/cAc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934219	49934219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	61	440	0	ENST00000296474.3:c.2288C>A	p.Thr763Asn	p.T763N	ENST00000296474	NM_002447.2	763	aCc/aAc																																																																															
RB1	5925	MSKCC	GRCh37	13	48937083	48937083	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	57	234	0	ENST00000267163.4:c.851A>G	p.Asn284Ser	p.N284S	ENST00000267163	NM_000321.2	284	aAt/aGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107068	27107069	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0072480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	106	487	0	ENST00000324856.7:c.6680dup	p.Ser2227ArgfsTer51	p.S2227Rfs*51	ENST00000324856	NM_006015.4	2227	agt/aGgt																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0072482-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	57	410	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112170788	112170789	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0072482-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	53	383	0	ENST00000257430.4:c.1885_1886del	p.Leu629SerfsTer4	p.L629Sfs*4	ENST00000257430	NM_000038.5	628	acTTta/acta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0072482-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	68	465	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
ELF3	1999	MSKCC	GRCh37	1	201984337	201984338	+	inframe_insertion,splice_region_variant	In_Frame_Ins	INS	-	-	TAC			P-0072482-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	42	391	0	ENST00000359651.3:c.1009_1011dup	p.Tyr337dup	p.Y337dup	ENST00000359651		337	-/TAC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0072486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	32	254	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs137854575		P-0072486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	98	450	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47600710	47600710	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs866758817		P-0072486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	117	294	0	ENST00000263735.4:c.184+1G>A		p.X62_splice	ENST00000263735	NM_002354.2	62																																																																																
APC	324	MSKCC	GRCh37	5	112175377	112175378	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	94	391	0	ENST00000257430.4:c.4090dup	p.Ser1364LysfsTer11	p.S1364Kfs*11	ENST00000257430	NM_000038.5	1362	-/A																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089462	27089462	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0072486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	216	450	0	ENST00000324856.7:c.2420-2A>G		p.X807_splice	ENST00000324856	NM_006015.4	807																																																																																
FAT1	2195	MSKCC	GRCh37	4	187517807	187517807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	82	431	0	ENST00000441802.2:c.12887G>A	p.Arg4296Gln	p.R4296Q	ENST00000441802	NM_005245.3	4296	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0072486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	128	274	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133249257	133249257	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs908638591		P-0072486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	72	374	0	ENST00000320574.5:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000320574	NM_006231.2	548	Gag/Aag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396426	396429	+	frameshift_variant	Frame_Shift_Del	DEL	GGAG	GGAG	-			P-0072486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	114	453	0	ENST00000262320.3:c.597_600del	p.Phe201LeufsTer40	p.F201Lfs*40	ENST00000262320	NM_003502.3	199	ccCTCC/cc																																																																															
RAB35	11021	MSKCC	GRCh37	12	120535159	120535160	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGTGA			P-0072486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	76	366	0	ENST00000229340.5:c.491_495dup	p.Glu166SerfsTer25	p.E166Sfs*25	ENST00000229340	NM_006861.6	165	-/TCACG																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032469	12032469	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	18	294	0	ENST00000353533.5:c.905C>G	p.Thr302Arg	p.T302R	ENST00000353533	NM_003010.3	302	aCa/aGa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099103	27099103	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	132	480	1	ENST00000324856.7:c.3524del	p.Pro1175HisfsTer5	p.P1175Hfs*5	ENST00000324856	NM_006015.4	1173	atC/at																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	122	433	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
RET	5979	MSKCC	GRCh37	10	43620387	43620387	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748288493		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	118	332	0	ENST00000355710.3:c.2996C>T	p.Ala999Val	p.A999V	ENST00000355710	NM_020975.4	999	gCg/gTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112106	115112106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	99	470	2	ENST00000257566.3:c.1634C>T	p.Thr545Met	p.T545M	ENST00000257566	NM_016569.3	545	aCg/aTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518988	103518988	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	108	325	0	ENST00000355739.4:c.2326C>A	p.Leu776Met	p.L776M	ENST00000355739	NM_000123.3	776	Ctg/Atg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	99	328	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	115	405	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
BLM	641	MSKCC	GRCh37	15	91354509	91354509	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730880251		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	146	435	0	ENST00000355112.3:c.3949G>A	p.Glu1317Lys	p.E1317K	ENST00000355112	NM_000057.2	1317	Gag/Aag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347748	347748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	87	399	0	ENST00000262320.3:c.1758del	p.Asn587ThrfsTer118	p.N587Tfs*118	ENST00000262320	NM_003502.3	586	ccC/cc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	108	401	0	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2131719	2131719	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746588726		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	123	427	0	ENST00000219476.3:c.3734G>A	p.Arg1245Gln	p.R1245Q	ENST00000219476	NM_000548.3	1245	cGg/cAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	215	371	0	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	68	448	6	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	264	467	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	126	454	2	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584514	48584514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	104	361	0	ENST00000342988.3:c.692del	p.Gly231AlafsTer10	p.G231Afs*10	ENST00000342988	NM_005359.5	229	ctG/ct																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	174	386	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238758086		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	124	453	2	ENST00000358026.2:c.2729C>T	p.Thr910Met	p.T910M	ENST00000358026	NM_001128849.1	910	aCg/aTg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18956798	18956798	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754519840		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	91	284	0	ENST00000262803.5:c.241G>A	p.Glu81Lys	p.E81K	ENST00000262803	NM_002911.3	81	Gaa/Aaa																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	98	348	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46587790	46587791	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	92	321	1	ENST00000263734.3:c.475dup	p.Ser159LysfsTer52	p.S159Kfs*52	ENST00000263734	NM_001430.4	156	-/A																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC	rs1361078163		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	44	428	1	ENST00000234420.5:c.3260_3261dup	p.Phe1088ProfsTer3	p.F1088Pfs*3	ENST00000234420	NM_000179.2	1085	acc/aCCcc																																																																															
BARD1	580	MSKCC	GRCh37	2	215593430	215593430	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730881409		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	99	366	0	ENST00000260947.4:c.2304G>A	p.Met768Ile	p.M768I	ENST00000260947	NM_000465.2	768	atG/atA																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	232	419	7	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790090	40790090	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	28	409	0	ENST00000373198.4:c.2641del	p.Arg881GlyfsTer20	p.R881Gfs*20	ENST00000373198	NM_133170.3	881	Cgg/gg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306602	41306602	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1419824411		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	98	311	0	ENST00000373198.4:c.1057G>A	p.Asp353Asn	p.D353N	ENST00000373198	NM_133170.3	353	Gat/Aat																																																																															
TP63	8626	MSKCC	GRCh37	3	189612251	189612251	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758317410		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	107	386	0	ENST00000264731.3:c.2003G>A	p.Arg668His	p.R668H	ENST00000264731	NM_003722.4	668	cGc/cAc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806153	1806153	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28931615		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	110	394	0	ENST00000260795.2:c.1172C>T	p.Ala391Val	p.A391V	ENST00000260795		391	gCg/gTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55968667	55968667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	123	294	0	ENST00000263923.4:c.1996G>A	p.Ala666Thr	p.A666T	ENST00000263923	NM_002253.2	666	Gca/Aca																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383988	84383988	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs35378950		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	110	331	1	ENST00000321945.7:c.864del	p.Pro289GlnfsTer13	p.P289Qfs*13	ENST00000321945	NM_139076.2	288	ttT/tt																																																																															
APC	324	MSKCC	GRCh37	5	112179338	112179338	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	139	411	0	ENST00000257430.4:c.8047A>G	p.Ile2683Val	p.I2683V	ENST00000257430	NM_000038.5	2683	Att/Gtt																																																																															
IRF4	3662	MSKCC	GRCh37	6	393199	393199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	84	327	0	ENST00000380956.4:c.47C>T	p.Ala16Val	p.A16V	ENST00000380956	NM_001195286.1	16	gCg/gTg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323288	31323288	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs74428022		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	23	52	0	ENST00000412585.2:c.701C>T	p.Pro234Leu	p.P234L	ENST00000412585	NM_005514.6	234	cCt/cTt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	64	246	2	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405821	157405822	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	134	367	0	ENST00000346085.5:c.2067dup	p.Thr690HisfsTer73	p.T690Hfs*73	ENST00000346085	NM_020732.3	688	ctc/ctCc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405954	157405954	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	134	433	0	ENST00000346085.5:c.2201del	p.Gly734AlafsTer11	p.G734Afs*11	ENST00000346085	NM_020732.3	732	ccG/cc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	100	309	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	100	357	3	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141595382	141595382	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	96	438	0	ENST00000220592.5:c.51del	p.Ile18SerfsTer121	p.I18Sfs*121	ENST00000220592	NM_012154.3	17	ccC/cc																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006218	22006218	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1204549439		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	101	448	0	ENST00000276925.6:c.185C>T	p.Ala62Val	p.A62V	ENST00000276925	NM_004936.3	62	gCg/gTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39914632	39914632	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	85	261	0	ENST00000378444.4:c.4730del	p.Lys1577SerfsTer3	p.K1577Sfs*3	ENST00000378444	NM_001123385.1	1577	aAg/ag																																																																															
ATRX	546	MSKCC	GRCh37	X	76949404	76949404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	92	273	0	ENST00000373344.5:c.393G>T	p.Glu131Asp	p.E131D	ENST00000373344	NM_000489.3	131	gaG/gaT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100181	27100182	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA	rs570962335		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	104	480	1	ENST00000324856.7:c.3999_4001dup	p.Gln1334dup	p.Q1334dup	ENST00000324856	NM_006015.4	1334	ccg/ccGCAg																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47595204	47595204	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767776935		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	119	353	0	ENST00000395288.2:c.835G>A	p.Ala279Thr	p.A279T	ENST00000395288	NM_016506.5	279	Gcg/Acg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94170372	94170372	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852759		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	51	219	0	ENST00000323929.3:c.1897C>T	p.Arg633Ter	p.R633*	ENST00000323929	NM_005591.3	633	Cga/Tga																																																																															
POLE	5426	MSKCC	GRCh37	12	133241022	133241022	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	103	337	0	ENST00000320574.5:c.2495C>A	p.Ala832Asp	p.A832D	ENST00000320574	NM_006231.2	832	gCt/gAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914624	32914625	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	81	391	0	ENST00000380152.3:c.6136dup	p.Ser2046PhefsTer3	p.S2046Ffs*3	ENST00000380152		2044	-/T																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346964	73346964	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1379959239		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	90	336	0	ENST00000377767.4:c.1253G>A	p.Arg418Lys	p.R418K	ENST00000377767	NM_014953.3	418	aGa/aAa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560332	95560332	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1460430963		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	79	350	0	ENST00000343455.3:c.5257G>A	p.Asp1753Asn	p.D1753N	ENST00000343455	NM_177438.2	1753	Gac/Aac																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641086	3641086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	108	412	0	ENST00000294008.3:c.2553G>A	p.Met851Ile	p.M851I	ENST00000294008	NM_032444.2	851	atG/atA																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554285	63554286	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	142	481	0	ENST00000307078.5:c.453dup	p.Ala152CysfsTer16	p.A152Cfs*16	ENST00000307078	NM_004655.3	151	-/T																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119956	70119957	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCATC			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	108	325	0	ENST00000245479.2:c.959_963dup	p.Ser322AlafsTer63	p.S322Afs*63	ENST00000245479	NM_000346.3	320	ggc/gGCATCgc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25964906	25964906	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1401310124		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	126	318	0	ENST00000435504.4:c.4300G>A	p.Val1434Ile	p.V1434I	ENST00000435504		1434	Gtt/Att																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245400	153245400	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	112	343	0	ENST00000281708.4:c.1791del	p.Asn598MetfsTer30	p.N598Mfs*30	ENST00000281708	NM_033632.3	597	ggG/gg																																																																															
SDHA	6389	MSKCC	GRCh37	5	235429	235429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	96	335	0	ENST00000264932.6:c.1235G>A	p.Gly412Asp	p.G412D	ENST00000264932	NM_004168.2	412	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112176120	112176120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	159	436	0	ENST00000257430.4:c.4829G>T	p.Ser1610Ile	p.S1610I	ENST00000257430	NM_000038.5	1610	aGt/aTt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180052968	180052968	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1434595560		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	115	437	0	ENST00000261937.6:c.1322A>G	p.Gln441Arg	p.Q441R	ENST00000261937	NM_182925.4	441	cAg/cGg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910746	29910746	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs199474452		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	97	267	0	ENST00000376809.5:c.286C>T	p.Gln96Ter	p.Q96*	ENST00000376809	NM_002116.7	96	Cag/Tag																																																																															
SMO	6608	MSKCC	GRCh37	7	128843230	128843230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768850042		P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	79	383	0	ENST00000249373.3:c.337C>T	p.Arg113Trp	p.R113W	ENST00000249373	NM_005631.4	113	Cgg/Tgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877936	151877936	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	137	375	0	ENST00000262189.6:c.7009T>C	p.Ser2337Pro	p.S2337P	ENST00000262189	NM_170606.2	2337	Tct/Cct																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222429	6222429	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	31	260	0	ENST00000252674.7:c.813del	p.Pro273HisfsTer69	p.P273Hfs*69	ENST00000252674	NM_005934.3	271	ggG/gg																																																																															
APC	324	MSKCC	GRCh37	5	112164646	112164646	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	138	305	0	ENST00000257430.4:c.1720G>T	p.Glu574Ter	p.E574*	ENST00000257430	NM_000038.5	574	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0072521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	250	343	0	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807902	3807902	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0072521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	206	405	0	ENST00000262367.5:c.3517C>T	p.Arg1173Ter	p.R1173*	ENST00000262367	NM_004380.2	1173	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0072521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	172	271	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857693	9857693	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	267	519	0	ENST00000330684.3:c.3708C>A	p.Cys1236Ter	p.C1236*	ENST00000330684	NM_001134407.1	1236	tgC/tgA																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0072552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	139	323	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882025		P-0072552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	235	523	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106072	8106072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	77	443	0	ENST00000346208.3:c.892C>T	p.Arg298Trp	p.R298W	ENST00000346208		298	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492732	56492732	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	214	463	0	ENST00000407977.2:c.207del	p.Phe69LeufsTer7	p.F69Lfs*7	ENST00000407977		69	ttT/tt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812259	212812259	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs991337964		P-0072552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	106	401	0	ENST00000342788.4:c.317G>A	p.Arg106His	p.R106H	ENST00000342788	NM_005235.2	106	cGt/cAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992720	68992720	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182978151		P-0072552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	58	377	0	ENST00000288368.4:c.1685G>A	p.Arg562His	p.R562H	ENST00000288368	NM_024870.2	562	cGt/cAt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023159	31023159	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs770209084		P-0072552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	178	536	0	ENST00000375687.4:c.2644C>T	p.Gln882Ter	p.Q882*	ENST00000375687	NM_015338.5	882	Caa/Taa																																																																															
AR	367	MSKCC	GRCh37	X	66941680	66941680	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137852572		P-0072552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	80	378	0	ENST00000374690.3:c.2324G>A	p.Arg775His	p.R775H	ENST00000374690	NM_000044.3	775	cGc/cAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857420	9857420	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	171	482	0	ENST00000330684.3:c.3981C>G	p.Ser1327Arg	p.S1327R	ENST00000330684	NM_001134407.1	1327	agC/agG																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206646625	206646625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	171	421	0	ENST00000367120.3:c.55G>A	p.Ala19Thr	p.A19T	ENST00000367120	NM_014002.3	19	Gcc/Acc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88428966	88428966	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0072552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	24	197	0	ENST00000360948.2:c.2134C>T	p.Leu712Phe	p.L712F	ENST00000360948	NM_001012338.2	712	Ctc/Ttc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998777	100998777	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1302681584		P-0072552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	89	463	0	ENST00000325455.5:c.1025C>T	p.Pro342Leu	p.P342L	ENST00000325455	NM_001202474.3	342	cCg/cTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779868	3779868	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	36	420	0	ENST00000262367.5:c.5180A>G	p.Asp1727Gly	p.D1727G	ENST00000262367	NM_004380.2	1727	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0072594-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	208	422	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087503	27087503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072594-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			801	282	578	0	ENST00000324856.7:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000324856	NM_006015.4	693	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0072594-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	60	316	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175175	112175175	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072594-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	97	414	0	ENST00000257430.4:c.3885del	p.Ala1296GlnfsTer9	p.A1296Qfs*9	ENST00000257430	NM_000038.5	1295	gAa/ga																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323096	31323096	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0072594-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1212	80	837	0	ENST00000412585.2:c.893G>A	p.Trp298Ter	p.W298*	ENST00000412585	NM_005514.6	298	tGg/tAg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738725	145738725	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369488194		P-0072594-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			764	1313	592	1	ENST00000428558.2:c.2339G>A	p.Arg780Gln	p.R780Q	ENST00000428558	NM_004260.3	780	cGg/cAg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371824	55371824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072594-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1116	59	432	0	ENST00000297316.4:c.514G>A	p.Gly172Ser	p.G172S	ENST00000297316	NM_022454.3	172	Ggc/Agc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799641	72799641	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145150877		P-0072594-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	58	441	0	ENST00000325599.8:c.1528C>T	p.Arg510Cys	p.R510C	ENST00000325599	NM_018130.2	510	Cgc/Tgc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136015	64136015	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1440181729		P-0072594-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	199	443	1	ENST00000334205.4:c.1276C>T	p.Arg426Cys	p.R426C	ENST00000334205	NM_003942.2	426	Cgc/Tgc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275225	41275225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072594-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	236	515	0	ENST00000349496.5:c.1391C>T	p.Ala464Val	p.A464V	ENST00000349496	NM_001904.3	464	gCc/gTc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033461	48033461	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072594-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	23	390	0	ENST00000234420.5:c.3765T>A	p.Asp1255Glu	p.D1255E	ENST00000234420	NM_000179.2	1255	gaT/gaA																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117910	70117911	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0072594-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	76	487	0	ENST00000245479.2:c.378_379del	p.Tyr127ProfsTer124	p.Y127Pfs*124	ENST00000245479	NM_000346.3	126	caGTac/caac																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0072619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	76	215	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117632202	117632202	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139881304		P-0072619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			94	32	187	1	ENST00000368508.3:c.6214C>T	p.Arg2072Trp	p.R2072W	ENST00000368508	NM_002944.2	2072	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0072619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	226	553	1	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508995	106508995	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62001906		P-0072619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	87	451	1	ENST00000359195.3:c.989C>T	p.Thr330Met	p.T330M	ENST00000359195	NM_002649.2	330	aCg/aTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262483	16262483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369155141		P-0072619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	37	256	0	ENST00000375759.3:c.9748G>A	p.Val3250Ile	p.V3250I	ENST00000375759	NM_015001.2	3250	Gtc/Atc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68942745	68942745	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781270008		P-0072619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	32	397	0	ENST00000288368.4:c.557G>A	p.Arg186Gln	p.R186Q	ENST00000288368	NM_024870.2	186	cGg/cAg																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032110	26032110	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	174	543	0	ENST00000244661.2:c.179A>G	p.Glu60Gly	p.E60G	ENST00000244661	NM_003537.3	60	gAg/gGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591928	48591929	+	stop_gained	Nonsense_Mutation	DNP	TG	TG	AA			P-0072619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	33	298	0	ENST00000342988.3:c.1091_1092delinsAA	p.Leu364Ter	p.L364*	ENST00000342988	NM_005359.5	364	tTG/tAA																																																																															
NF1	4763	MSKCC	GRCh37	17	29559091	29559091	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0072619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	17	49	0	ENST00000358273.4:c.3198A>C	p.Arg1066Ser	p.R1066S	ENST00000358273	NM_001042492.2	1066	agA/agC																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185167797	185167797	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	71	294	0	ENST00000265026.3:c.1120G>C	p.Val374Leu	p.V374L	ENST00000265026	NM_004721.4	374	Gtt/Ctt																																																																															
POLE	5426	MSKCC	GRCh37	12	133219288	133219288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746266857		P-0072619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	76	423	2	ENST00000320574.5:c.4756G>A	p.Ala1586Thr	p.A1586T	ENST00000320574	NM_006231.2	1586	Gct/Act																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162399	47162399	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	49	359	0	ENST00000409792.3:c.3727A>G	p.Ile1243Val	p.I1243V	ENST00000409792	NM_014159.6	1243	Ata/Gta																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36938140	36938140	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs559297734		P-0072623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	73	360	0	ENST00000361632.4:c.821G>A	p.Arg274His	p.R274H	ENST00000361632		274	cGt/cAt																																																																															
ATM	472	MSKCC	GRCh37	11	108186757	108186757	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs864622251		P-0072623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	183	378	0	ENST00000278616.4:c.6115G>A	p.Glu2039Lys	p.E2039K	ENST00000278616	NM_000051.3	2039	Gaa/Aaa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88726698	88726698	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375475747		P-0072623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			770	147	334	0	ENST00000360948.2:c.346C>T	p.Arg116Trp	p.R116W	ENST00000360948	NM_001012338.2	116	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0072623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	165	364	0	ENST00000269305.4:c.96+1G>A		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																																
AXL	558	MSKCC	GRCh37	19	41744483	41744483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755240418		P-0072623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	187	393	0	ENST00000301178.4:c.1103G>A	p.Arg368Gln	p.R368Q	ENST00000301178	NM_021913.4	368	cGg/cAg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42852427	42852427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	107	382	0	ENST00000398585.3:c.659C>T	p.Ala220Val	p.A220V	ENST00000398585	NM_001135099.1	220	gCg/gTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0072623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	103	377	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0072623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	48	239	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857378	9857378	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs749919548		P-0072623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	93	394	0	ENST00000330684.3:c.4023C>G	p.Ser1341Arg	p.S1341R	ENST00000330684	NM_001134407.1	1341	agC/agG																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445469	29445469	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779844636		P-0072623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	204	376	0	ENST00000544604.2:c.1300G>A	p.Gly434Ser	p.G434S	ENST00000544604	NM_001206998.1	434	Ggc/Agc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	67	154	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0072630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	165	398	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108175528	108175528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs376603775		P-0072630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	127	310	0	ENST00000278616.4:c.5623C>T	p.Arg1875Ter	p.R1875*	ENST00000278616	NM_000051.3	1875	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0072630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	311	383	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110228	3110228	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769019097		P-0072630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	182	482	0	ENST00000078429.4:c.218G>A	p.Arg73His	p.R73H	ENST00000078429	NM_002067.2	73	cGc/cAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160664	56160664	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200705994		P-0072630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	193	400	0	ENST00000399503.3:c.938G>A	p.Arg313Gln	p.R313Q	ENST00000399503	NM_005921.1	313	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0072630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	34	149	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119780	70119781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0072630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	473	356	0	ENST00000245479.2:c.787_788dup	p.Arg264AlafsTer16	p.R264Afs*16	ENST00000245479	NM_000346.3	261	gag/gaGGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0072653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	28	482	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0072732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	259	296	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788617	3788617	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519884		P-0072732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	177	215	0	ENST00000262367.5:c.4337G>A	p.Arg1446His	p.R1446H	ENST00000262367	NM_004380.2	1446	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0072732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	65	204	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0072732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	37	156	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0072732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	197	169	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0072736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	82	341	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0072736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	58	361	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
ATM	472	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs772821016		P-0072736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	27	326	0	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174484	112174484	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	48	375	0	ENST00000257430.4:c.3193C>T	p.Gln1065Ter	p.Q1065*	ENST00000257430	NM_000038.5	1065	Caa/Taa																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625219	69625219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	39	392	0	ENST00000334134.2:c.574C>T	p.Arg192Trp	p.R192W	ENST00000334134	NM_005247.2	192	Cgg/Tgg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748660	43748661	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0072736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	102	374	1	ENST00000382044.4:c.2145dup	p.Glu716ArgfsTer9	p.E716Rfs*9	ENST00000382044	NM_001141980.1	715	-/A																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109903	115109903	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1182290035		P-0072736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	48	399	1	ENST00000257566.3:c.1975G>A	p.Ala659Thr	p.A659T	ENST00000257566	NM_016569.3	659	Gcc/Acc																																																																															
ERF	2077	MSKCC	GRCh37	19	42752763	42752763	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760204780		P-0072736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	28	438	0	ENST00000222329.4:c.1501G>A	p.Ala501Thr	p.A501T	ENST00000222329	NM_006494.2	501	Gct/Act																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619427	1619427	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201296678		P-0072736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	36	376	0	ENST00000344749.5:c.1214G>A	p.Arg405His	p.R405H	ENST00000344749	NM_001136139.2	405	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108143448	108143448	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0072736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	185	304	0	ENST00000278616.4:c.3154-1G>C		p.X1052_splice	ENST00000278616	NM_000051.3	1052																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0072736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	126	208	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100695	8101717	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCCTACGTGCCCGAGTACAGCTCCGGACTCTTCCCCCCCAGCAGCCTGCTGGGCGGCTCCCCCACCGGCTTCGGATGCAAGTCCAGGCCCAAGGCCCGGTCCAGCACAGGTAGGAGCCAGCTCTTCCCTGGAGCCTTTTCTCCTCCCTCCTCCCCTTTTCCTCAATCCAGGGCCGCACCCAGAGGGACCCCTCAGGGGAGCCGGGGTGTCCCAAAGCCTGCTGAGATGCCATTCTTCCCATTCTTCCTGCCGGGAAGGCACTGCATGTCCTCCCATCCTAGCTCACGCCTGGCCTCGGAAGCAGAGGGGAAGTGGGATCTGATTTAAAACCCCCCAATGAGCTGGGATAGGAAAAAAGACAAACAAAAACAAAGTCATGCCCTCTTCTGCCTGTCGCAGGACTTCTGGATTGGGCTGGTAACCTTTAGTCAGTTTCCAAGACCAAATGGAAGGCCGAGGGAATAATTCTTGAGTGTTTCATGCTAAAACGAAACCTCCTCAAGCCTAAACAAACACAGGTCCCTCTATGACCCCTTTGGCCTCTGTCATTCTGACTGTTCCTCTCGCTCAGCTCAAAGGGGACCACGCAGTGAGGACAGTCCTTTATTAGACGTGTAGACACAAAGTGTGTGTGCATGAGCCTGGCCAAAGCTGCACGCATATTCTCTGCGTGGAAAAGGGGGCTCTCAGCTGAACTGGGAGAAAGCGGTGGCTTTGCATTGGGGAAGCAGAGTTGAATGAAAATCAAATGTCGCCTGGCCCAGTTAGTTACCTGCAGCGTCTCCTAGAGCTCTCAGTGCAGTCAGGGGCAGGAAACCGTATTAGGACATATTGCTTGGCTGAGCTGCAGCCAGAGGAGGTAGAAAGGAACGGAAAAGTGCTCCAGGTGTGTATCTCAGCTTCCTGTGCTCTGTTCCTTTCCAAAATGCAAACGCTGCCTAGCAGCACGCTGCATTTTTATTCAGTTGGTGTCATTACTTGCATGAAGAAAAACCCCACACAAAATACTTTGGCTTTAAAAA	GCCCTACGTGCCCGAGTACAGCTCCGGACTCTTCCCCCCCAGCAGCCTGCTGGGCGGCTCCCCCACCGGCTTCGGATGCAAGTCCAGGCCCAAGGCCCGGTCCAGCACAGGTAGGAGCCAGCTCTTCCCTGGAGCCTTTTCTCCTCCCTCCTCCCCTTTTCCTCAATCCAGGGCCGCACCCAGAGGGACCCCTCAGGGGAGCCGGGGTGTCCCAAAGCCTGCTGAGATGCCATTCTTCCCATTCTTCCTGCCGGGAAGGCACTGCATGTCCTCCCATCCTAGCTCACGCCTGGCCTCGGAAGCAGAGGGGAAGTGGGATCTGATTTAAAACCCCCCAATGAGCTGGGATAGGAAAAAAGACAAACAAAAACAAAGTCATGCCCTCTTCTGCCTGTCGCAGGACTTCTGGATTGGGCTGGTAACCTTTAGTCAGTTTCCAAGACCAAATGGAAGGCCGAGGGAATAATTCTTGAGTGTTTCATGCTAAAACGAAACCTCCTCAAGCCTAAACAAACACAGGTCCCTCTATGACCCCTTTGGCCTCTGTCATTCTGACTGTTCCTCTCGCTCAGCTCAAAGGGGACCACGCAGTGAGGACAGTCCTTTATTAGACGTGTAGACACAAAGTGTGTGTGCATGAGCCTGGCCAAAGCTGCACGCATATTCTCTGCGTGGAAAAGGGGGCTCTCAGCTGAACTGGGAGAAAGCGGTGGCTTTGCATTGGGGAAGCAGAGTTGAATGAAAATCAAATGTCGCCTGGCCCAGTTAGTTACCTGCAGCGTCTCCTAGAGCTCTCAGTGCAGTCAGGGGCAGGAAACCGTATTAGGACATATTGCTTGGCTGAGCTGCAGCCAGAGGAGGTAGAAAGGAACGGAAAAGTGCTCCAGGTGTGTATCTCAGCTTCCTGTGCTCTGTTCCTTTCCAAAATGCAAACGCTGCCTAGCAGCACGCTGCATTTTTATTCAGTTGGTGTCATTACTTGCATGAAGAAAAACCCCACACAAAATACTTTGGCTTTAAAAA	-			P-0072736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	31	447	0	ENST00000346208.3:c.669_778+913del		p.X223_splice	ENST00000346208		223																																																																																
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0072736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	100	380	0	ENST00000257430.4:c.4469_4470insG	p.His1490GlnfsTer24	p.H1490Qfs*24	ENST00000257430	NM_000038.5	1490	cat/caGt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945093	38945093	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0072736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	31	309	0	ENST00000357387.3:c.4711T>G	p.Ser1571Ala	p.S1571A	ENST00000357387	NM_152756.3	1571	Tcg/Gcg																																																																															
APC	324	MSKCC	GRCh37	5	112173766	112173766	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0072736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	88	309	0	ENST00000257430.4:c.2475T>A	p.Tyr825Ter	p.Y825*	ENST00000257430	NM_000038.5	825	taT/taA																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485924	8485924	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1295362978		P-0072736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	44	387	0	ENST00000356435.5:c.2893C>T	p.Leu965Phe	p.L965F	ENST00000356435		965	Ctt/Ttt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs770248150		P-0072740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			55	21	41	0	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355041	73355041	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs976754238		P-0072740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	92	46	0	ENST00000377767.4:c.329G>A	p.Arg110Gln	p.R110Q	ENST00000377767	NM_014953.3	110	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0072740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	133	259	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46740290	46740290	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	126	108	0	ENST00000371975.4:c.1770G>T	p.Met590Ile	p.M590I	ENST00000371975	NM_003579.3	590	atG/atT																																																																															
EP300	2033	MSKCC	GRCh37	22	41542800	41542800	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	31	89	0	ENST00000263253.7:c.2111C>G	p.Pro704Arg	p.P704R	ENST00000263253	NM_001429.3	704	cCt/cGt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685316	86685316	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770325546		P-0072740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	77	66	0	ENST00000274376.6:c.3032C>T	p.Thr1011Met	p.T1011M	ENST00000274376	NM_002890.2	1011	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112174860	112174860	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs886039618		P-0072740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	56	62	0	ENST00000257430.4:c.3569C>A	p.Ser1190Ter	p.S1190*	ENST00000257430	NM_000038.5	1190	tCa/tAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0072747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	70	179	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0072747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	256	410	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173684	112173685	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0072747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	111	294	0	ENST00000257430.4:c.2395dup	p.Tyr799LeufsTer4	p.Y799Lfs*4	ENST00000257430	NM_000038.5	798	gat/gaTt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220135	5220135	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1269111261		P-0072747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	58	389	0	ENST00000357368.4:c.3580C>T	p.Arg1194Cys	p.R1194C	ENST00000357368	NM_002850.3	1194	Cgc/Tgc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245830	41245830	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	56	298	0	ENST00000357654.3:c.1718C>A	p.Ser573Ter	p.S573*	ENST00000357654	NM_007294.3	573	tCa/tAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219739	36219739	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	92	393	0	ENST00000222270.7:c.4636C>T	p.Gln1546Ter	p.Q1546*	ENST00000222270	NM_014727.1	1546	Cag/Tag																																																																															
PAK1	5058	MSKCC	GRCh37	11	77066878	77066878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	154	262	0	ENST00000356341.3:c.607C>T	p.Arg203Trp	p.R203W	ENST00000356341	NM_002576.4	203	Cgg/Tgg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625334	69625334	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	30	378	0	ENST00000334134.2:c.459G>T	p.Trp153Cys	p.W153C	ENST00000334134	NM_005247.2	153	tgG/tgT																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436087	56436087	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1171	96	448	0	ENST00000407977.2:c.1050C>G	p.His350Gln	p.H350Q	ENST00000407977		350	caC/caG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578480	7578498	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGGAATCAACCCACAGC	TGTGGAATCAACCCACAGC	-			P-0072758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	293	433	0	ENST00000269305.4:c.432_450del	p.Gln144HisfsTer20	p.Q144Hfs*20	ENST00000269305	NM_001126112.2	144	caGCTGTGGGTTGATTCCACA/ca																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246021820	246021820	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	44	296	0	ENST00000388985.4:c.1054A>T	p.Thr352Ser	p.T352S	ENST00000388985		352	Act/Tct																																																																															
RAD21	5885	MSKCC	GRCh37	8	117866621	117866621	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	40	287	0	ENST00000297338.2:c.1024A>T	p.Ser342Cys	p.S342C	ENST00000297338	NM_006265.2	342	Agt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0072780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	41	173	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112771563	112771563	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1185910534		P-0072780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	51	246	0	ENST00000369452.4:c.1736G>A	p.Arg579His	p.R579H	ENST00000369452	NM_007373.3	579	cGt/cAt																																																																															
SESN1	27244	MSKCC	GRCh37	6	109315705	109315705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	53	136	0	ENST00000436639.2:c.1080del	p.Phe360LeufsTer3	p.F360Lfs*3	ENST00000436639	NM_014454.2	360	ttT/tt																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230493059	230493059	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1255617593		P-0072780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	52	368	0	ENST00000525115.1:c.133C>T	p.Arg45Ter	p.R45*	ENST00000525115		45	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578412	7578412	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	59	473	0	ENST00000269305.4:c.518del	p.Val173GlyfsTer74	p.V173Gfs*74	ENST00000269305	NM_001126112.2	173	gTg/gg																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2489895	2489895	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	64	458	0	ENST00000355716.4:c.292A>G	p.Met98Val	p.M98V	ENST00000355716	NM_003820.2	98	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0072815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	231	473	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0072815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	146	378	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138729528		P-0072815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	12	481	0	ENST00000269305.4:c.523C>T	p.Arg175Cys	p.R175C	ENST00000269305	NM_001126112.2	175	Cgc/Tgc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457246	67457246	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1343295267		P-0072815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	350	533	0	ENST00000327367.4:c.220C>T	p.Arg74Trp	p.R74W	ENST00000327367	NM_005902.3	74	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175775	112175775	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	185	447	0	ENST00000257430.4:c.4484del	p.Ser1495IlefsTer12	p.S1495Ifs*12	ENST00000257430	NM_000038.5	1495	aGt/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0072815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	129	250	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0072860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	331	492	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																																																															
APC	324	MSKCC	GRCh37	5	112174475	112174475	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	104	319	0	ENST00000257430.4:c.3184C>T	p.Gln1062Ter	p.Q1062*	ENST00000257430	NM_000038.5	1062	Caa/Taa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0072860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	252	262	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112128142	112128142	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0072860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	138	182	0	ENST00000257430.4:c.646-1G>A		p.X216_splice	ENST00000257430	NM_000038.5	216																																																																																
POLE	5426	MSKCC	GRCh37	12	133218811	133218811	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs572502366		P-0072860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	112	366	0	ENST00000320574.5:c.5125G>A	p.Asp1709Asn	p.D1709N	ENST00000320574	NM_006231.2	1709	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	113	449	0	ENST00000269305.4:c.814G>C	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ctg																																																																															
APC	324	MSKCC	GRCh37	5	112175213	112175213	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0072873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	135	355	0	ENST00000257430.4:c.3922A>T	p.Lys1308Ter	p.K1308*	ENST00000257430	NM_000038.5	1308	Aaa/Taa																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64289969	64289969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	31	227	0	ENST00000370651.3:c.412C>T	p.Arg138Cys	p.R138C	ENST00000370651	NM_003463.4	138	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099449	27099449	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	41	385	0	ENST00000324856.7:c.3686A>G	p.Asn1229Ser	p.N1229S	ENST00000324856	NM_006015.4	1229	aAt/aGt																																																																															
CDC42	998	MSKCC	GRCh37	1	22408235	22408236	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0072873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	38	151	0	ENST00000344548.3:c.128_129del	p.Thr43SerfsTer14	p.T43Sfs*14	ENST00000344548	NM_001039802.1	42	gtCAca/gtca																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366230	15366230	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	43	396	0	ENST00000263377.2:c.1925C>A	p.Pro642His	p.P642H	ENST00000263377	NM_058243.2	642	cCc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175209	112175209	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0072873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	133	343	0	ENST00000257430.4:c.3918A>T	p.Glu1306Asp	p.E1306D	ENST00000257430	NM_000038.5	1306	gaA/gaT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117718246	117718246	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	34	262	0	ENST00000368508.3:c.611A>G	p.Glu204Gly	p.E204G	ENST00000368508	NM_002944.2	204	gAg/gGg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	198	353	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	67	259	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916946	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	82	263	0	ENST00000263967.3:c.332_334del	p.Lys111del	p.K111del	ENST00000263967	NM_006218.2	111	AAG/-																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	73	140	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101401	27101402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	69	236	0	ENST00000324856.7:c.4689dup	p.Met1564HisfsTer8	p.M1564Hfs*8	ENST00000324856	NM_006015.4	1561	-/C																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	158	302	0	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72891539	72891539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755870786		P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	147	283	0	ENST00000325599.8:c.223C>T	p.Arg75Cys	p.R75C	ENST00000325599	NM_018130.2	75	Cgc/Tgc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390736	139390736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	250	521	0	ENST00000277541.6:c.7455del	p.Ser2486ArgfsTer103	p.S2486Rfs*103	ENST00000277541	NM_017617.3	2485	ccC/cc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710595	114710597	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs754968616		P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	203	392	0	ENST00000543371.1:c.85_87del	p.Glu29del	p.E29del	ENST00000543371	NM_001198531.1	27	cAGGag/cag																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355296	15355296	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1282368628		P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	83	222	0	ENST00000263377.2:c.2327C>T	p.Pro776Leu	p.P776L	ENST00000263377	NM_058243.2	776	cCg/cTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1278890	1278890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	208	409	0	ENST00000310581.5:c.2152G>A	p.Asp718Asn	p.D718N	ENST00000310581	NM_198253.2	718	Gac/Aac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023831	27023831	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1415214478		P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	202	346	0	ENST00000324856.7:c.941del	p.Gly314AlafsTer49	p.G314Afs*49	ENST00000324856	NM_006015.4	313	Ggg/gg																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15821896	15821896	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	134	380	0	ENST00000307771.7:c.294del	p.Lys98AsnfsTer10	p.K98Nfs*10	ENST00000307771	NM_005089.3	97	Aaa/aa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942053	71942053	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	233	476	1	ENST00000298229.2:c.1322del	p.Asn441ThrfsTer2	p.N441Tfs*2	ENST00000298229	NM_001567.3	439	ccA/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	112	228	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874147	151874148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs771193709		P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	122	257	11	ENST00000262189.6:c.8390dup	p.Glu2798GlyfsTer11	p.E2798Gfs*11	ENST00000262189	NM_170606.2	2797	aag/aaAg																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66782074	66782075	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	122	271	0	ENST00000307102.5:c.1047_1048del	p.Arg349SerfsTer16	p.R349Sfs*16	ENST00000307102	NM_002755.3	347	gcAGag/gcag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223858	36223858	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			835	105	461	2	ENST00000222270.7:c.6413del	p.Pro2138ArgfsTer15	p.P2138Rfs*15	ENST00000222270	NM_014727.1	2136	ctC/ct																																																																															
EZH2	2146	MSKCC	GRCh37	7	148511116	148511116	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139878257		P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	308	350	0	ENST00000320356.2:c.1786G>A	p.Ala596Thr	p.A596T	ENST00000320356	NM_004456.4	596	Gct/Act																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012386	152012386	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	24	311	1	ENST00000262189.6:c.427del	p.Ser143ValfsTer3	p.S143Vfs*3	ENST00000262189	NM_170606.2	143	Agt/gt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420314	88420314	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767941638		P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	150	351	0	ENST00000360948.2:c.2372G>A	p.Arg791Gln	p.R791Q	ENST00000360948	NM_001012338.2	791	cGg/cAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636826	8636826	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1353675904		P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	172	333	0	ENST00000356435.5:c.83G>A	p.Arg28Gln	p.R28Q	ENST00000356435		28	cGa/cAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307394	118307394	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	63	162	4	ENST00000534358.1:c.173del	p.Pro58ArgfsTer92	p.P58Rfs*92	ENST00000534358	NM_005933.3	56	tCc/tc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784902	9784902	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs551657853		P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	222	345	0	ENST00000377346.4:c.2905C>T	p.Arg969Cys	p.R969C	ENST00000377346	NM_005026.3	969	Cgc/Tgc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31322882	31322882	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	191	395	0	ENST00000412585.2:c.1012+2T>C		p.X338_splice	ENST00000412585	NM_005514.6	338																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118343094	118343094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	178	415	0	ENST00000534358.1:c.1220G>A	p.Arg407Gln	p.R407Q	ENST00000534358	NM_005933.3	407	cGa/cAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214058	36214058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1385766471		P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			776	84	442	1	ENST00000222270.7:c.2884C>T	p.Arg962Cys	p.R962C	ENST00000222270	NM_014727.1	962	Cgc/Tgc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2107113	2107113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45502703		P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	141	315	0	ENST00000219476.3:c.782G>A	p.Arg261Gln	p.R261Q	ENST00000219476	NM_000548.3	261	cGg/cAg																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1327796	1327798	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs761286705		P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	95	276	0	ENST00000381566.1:c.83_85del	p.Glu28del	p.E28del	ENST00000381566		28	gAAGga/gga																																																																															
BRCA1	672	MSKCC	GRCh37	17	41209095	41209095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs80357123		P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	180	346	0	ENST00000357654.3:c.5251C>T	p.Arg1751Ter	p.R1751*	ENST00000357654	NM_007294.3	1751	Cga/Tga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466362	120466363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	201	429	0	ENST00000256646.2:c.4756dup	p.Glu1586GlyfsTer10	p.E1586Gfs*10	ENST00000256646	NM_024408.3	1586	gaa/gGaa																																																																															
CD79A	973	MSKCC	GRCh37	19	42383128	42383128	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs557160710		P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	204	345	2	ENST00000221972.3:c.148G>A	p.Ala50Thr	p.A50T	ENST00000221972	NM_021601.3	50	Gcc/Acc																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228613002	228613002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147766330		P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	218	513	0	ENST00000366696.1:c.25C>T	p.Arg9Cys	p.R9C	ENST00000366696	NM_003493.2	9	Cgc/Tgc																																																																															
INSR	3643	MSKCC	GRCh37	19	7117120	7117120	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	83	355	0	ENST00000302850.5:c.4096G>T	p.Gly1366Ter	p.G1366*	ENST00000302850	NM_000208.2	1366	Gga/Tga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32968934	32968934	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs571971903		P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	109	368	0	ENST00000380152.3:c.9365C>T	p.Ala3122Val	p.A3122V	ENST00000380152		3122	gCa/gTa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097672	11097672	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	159	349	0	ENST00000344626.4:c.852G>A	p.Trp284Ter	p.W284*	ENST00000344626	NM_003072.3	284	tgG/tgA																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978339	2978339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1458284986		P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	255	393	0	ENST00000396946.4:c.991C>T	p.Arg331Cys	p.R331C	ENST00000396946	NM_032415.4	331	Cgc/Tgc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070285	37070291	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGAAG	CGGGAAG	-			P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	298	302	0	ENST00000231790.2:c.1420_1426del	p.Arg474IlefsTer15	p.R474Ifs*15	ENST00000231790	NM_000249.3	474	CGGGAAGat/at																																																																															
AR	367	MSKCC	GRCh37	X	66942698	66942698	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	115	311	0	ENST00000374690.3:c.2479T>A	p.Phe827Ile	p.F827I	ENST00000374690	NM_000044.3	827	Ttc/Atc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121435351	121435351	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762446965		P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	220	408	0	ENST00000257555.6:c.1384G>A	p.Val462Ile	p.V462I	ENST00000257555		462	Gtc/Atc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562632	21562632	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	114	305	0	ENST00000382592.4:c.1287del	p.Asn430ThrfsTer3	p.N430Tfs*3	ENST00000382592	NM_014572.2	429	ccC/cc																																																																															
JUN	3725	MSKCC	GRCh37	1	59248190	59248191	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	190	344	0	ENST00000371222.2:c.552dup	p.Gly185ArgfsTer125	p.G185Rfs*125	ENST00000371222	NM_002228.3	184	-/C																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554695	63554695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	220	456	0	ENST00000307078.5:c.44G>A	p.Ser15Asn	p.S15N	ENST00000307078	NM_004655.3	15	aGc/aAc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967111	18967111	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	53	271	0	ENST00000262803.5:c.1824+2T>G		p.X608_splice	ENST00000262803	NM_002911.3	608																																																																																
DICER1	23405	MSKCC	GRCh37	14	95595942	95595942	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774514314		P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	80	239	0	ENST00000343455.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000343455	NM_177438.2	201	Cgc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285174	15285174	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1415544497		P-0072909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	214	389	1	ENST00000263388.2:c.4441G>A	p.Asp1481Asn	p.D1481N	ENST00000263388	NM_000435.2	1481	Gac/Aac																																																																															
MTOR	2475	MSKCC	GRCh37	1	11169362	11169362	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	126	389	2	ENST00000361445.4:c.7513C>T	p.Arg2505Ter	p.R2505*	ENST00000361445	NM_004958.3	2505	Cga/Tga																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726267	46726267	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371935755		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	181	479	1	ENST00000371975.4:c.461G>A	p.Arg154Gln	p.R154Q	ENST00000371975	NM_003579.3	154	cGg/cAg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429962	78429962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	117	381	2	ENST00000370768.2:c.917G>A	p.Gly306Asp	p.G306D	ENST00000370768	NM_003902.3	306	gGt/gAt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115268950	115268950	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs750855257		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	114	335	0	ENST00000438362.2:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000438362	NM_001242891.1	554	Cga/Tga																																																																															
CDC73	79577	MSKCC	GRCh37	1	193094309	193094309	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748952219		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	135	368	1	ENST00000367435.3:c.199G>A	p.Val67Met	p.V67M	ENST00000367435	NM_024529.4	67	Gtg/Atg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206647813	206647813	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs554685342		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	141	368	3	ENST00000367120.3:c.227C>T	p.Thr76Met	p.T76M	ENST00000367120	NM_014002.3	76	aCg/aTg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850736	63850736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149466999		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	194	551	1	ENST00000279873.7:c.1514C>T	p.Ala505Val	p.A505V	ENST00000279873	NM_032199.2	505	gCg/gTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70451504	70451504	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	141	420	6	ENST00000373644.4:c.6344A>G	p.Asp2115Gly	p.D2115G	ENST00000373644	NM_030625.2	2115	gAc/gGc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653842	89653842	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057518425		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	83	301	3	ENST00000371953.3:c.140G>A	p.Arg47Lys	p.R47K	ENST00000371953	NM_000314.4	47	aGg/aAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913294		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	96	318	2	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941475	71941475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200043222		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	186	517	0	ENST00000298229.2:c.1160G>A	p.Arg387Gln	p.R387Q	ENST00000298229	NM_001567.3	387	cGg/cAg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94192626	94192626	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781378		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	91	341	3	ENST00000323929.3:c.1448G>A	p.Arg483Gln	p.R483Q	ENST00000323929	NM_005591.3	483	cGa/cAa																																																																															
ETV6	2120	MSKCC	GRCh37	12	11905496	11905496	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1007158603		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	169	405	4	ENST00000396373.4:c.146G>A	p.Arg49His	p.R49H	ENST00000396373	NM_001987.4	49	cGc/cAc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245076	46245076	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1234210825		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	184	560	2	ENST00000334344.6:c.3170C>T	p.Ser1057Leu	p.S1057L	ENST00000334344	NM_152641.2	1057	tCg/tTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285669	46285669	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1368075571		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	156	386	2	ENST00000334344.6:c.5029C>T	p.Arg1677Ter	p.R1677*	ENST00000334344	NM_152641.2	1677	Cga/Tga																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285869	46285869	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	142	402	0	ENST00000334344.6:c.5137T>C	p.Ser1713Pro	p.S1713P	ENST00000334344	NM_152641.2	1713	Tct/Cct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438656	49438656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	178	459	2	ENST00000301067.7:c.4834C>T	p.Arg1612Cys	p.R1612C	ENST00000301067	NM_003482.3	1612	Cgc/Tgc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482437	56482437	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	162	474	0	ENST00000267101.3:c.985A>G	p.Lys329Glu	p.K329E	ENST00000267101	NM_001982.3	329	Aaa/Gaa																																																																															
POLE	5426	MSKCC	GRCh37	12	133233826	133233826	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777401444		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	178	511	3	ENST00000320574.5:c.3478C>T	p.Arg1160Cys	p.R1160C	ENST00000320574	NM_006231.2	1160	Cgt/Tgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133253151	133253151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	146	351	2	ENST00000320574.5:c.890C>T	p.Ser297Phe	p.S297F	ENST00000320574	NM_006231.2	297	tCc/tTc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28644627	28644627	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	103	301	0	ENST00000241453.7:c.165+1G>A		p.X55_splice	ENST00000241453	NM_004119.2	55																																																																																
BRCA2	675	MSKCC	GRCh37	13	32972800	32972800	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397507568		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	142	475	3	ENST00000380152.3:c.10150C>T	p.Arg3384Ter	p.R3384*	ENST00000380152		3384	Cga/Tga																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518224	103518224	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376753356		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	146	435	4	ENST00000355739.4:c.2162C>T	p.Ala721Val	p.A721V	ENST00000355739	NM_000123.3	721	gCg/gTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103528224	103528224	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768302699		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	126	402	0	ENST00000355739.4:c.3532C>T	p.Arg1178Cys	p.R1178C	ENST00000355739	NM_000123.3	1178	Cgt/Tgt																																																																															
AKT1	207	MSKCC	GRCh37	14	105236728	105236728	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770370100		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	165	382	1	ENST00000349310.3:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000349310	NM_001014432.1	465	Cgc/Tgc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658481	3658481	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140876043		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	174	450	2	ENST00000294008.3:c.485C>T	p.Thr162Met	p.T162M	ENST00000294008	NM_032444.2	162	aCg/aTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777838	3777838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863223334		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			752	219	586	2	ENST00000262367.5:c.7210G>A	p.Glu2404Lys	p.E2404K	ENST00000262367	NM_004380.2	2404	Gaa/Aaa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3830754	3830754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	150	414	2	ENST00000262367.5:c.1802G>A	p.Arg601Gln	p.R601Q	ENST00000262367	NM_004380.2	601	cGg/cAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843552	3843552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	181	445	2	ENST00000262367.5:c.1051C>T	p.Arg351Cys	p.R351C	ENST00000262367	NM_004380.2	351	Cgc/Tgc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50816361	50816361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	123	362	0	ENST00000398568.2:c.1801G>A	p.Asp601Asn	p.D601N	ENST00000398568	NM_001042412.1	601	Gac/Aac																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81819713	81819713	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1347311494		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	161	446	1	ENST00000359376.3:c.119G>A	p.Arg40Gln	p.R40Q	ENST00000359376	NM_002661.3	40	cGg/cAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89371644	89371644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs949172972		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	170	456	2	ENST00000301030.4:c.196G>A	p.Ala66Thr	p.A66T	ENST00000301030	NM_001256183.1	66	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			782	219	578	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	204	509	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
RARA	5914	MSKCC	GRCh37	17	38512309	38512309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	132	338	0	ENST00000254066.5:c.1220C>T	p.Pro407Leu	p.P407L	ENST00000254066	NM_000964.3	407	cCg/cTg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533152	63533152	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730881399		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	137	421	1	ENST00000307078.5:c.1742G>A	p.Arg581His	p.R581H	ENST00000307078	NM_004655.3	581	cGc/cAc																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66520182	66520182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	171	452	1	ENST00000358598.2:c.466G>A	p.Val156Ile	p.V156I	ENST00000358598	NM_212471.2	156	Gtc/Atc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	163	495	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099405	4099405	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1348137830		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	177	401	1	ENST00000262948.5:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000262948	NM_030662.3	238	cGg/cAg																																																																															
INSR	3643	MSKCC	GRCh37	19	7152744	7152744	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768734111		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	169	408	1	ENST00000302850.5:c.2224G>A	p.Val742Ile	p.V742I	ENST00000302850	NM_000208.2	742	Gtc/Atc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10252720	10252720	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377078524		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	182	427	5	ENST00000340748.4:c.3245G>A	p.Arg1082His	p.R1082H	ENST00000340748		1082	cGc/cAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610306	10610306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	189	535	3	ENST00000171111.5:c.404G>A	p.Arg135His	p.R135H	ENST00000171111	NM_203500.1	135	cGc/cAc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349666	15349666	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200976853		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	174	484	0	ENST00000263377.2:c.3908C>T	p.Ala1303Val	p.A1303V	ENST00000263377	NM_058243.2	1303	gCg/gTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355266	15355266	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770044101		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	74	277	0	ENST00000263377.2:c.2357C>T	p.Pro786Leu	p.P786L	ENST00000263377	NM_058243.2	786	cCg/cTg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19258632	19258632	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757401725		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	174	485	8	ENST00000162023.5:c.268C>T	p.Arg90Trp	p.R90W	ENST00000162023		90	Cgg/Tgg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30303922	30303922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	100	401	0	ENST00000262643.3:c.158C>T	p.Ala53Val	p.A53V	ENST00000262643	NM_001238.2	53	gCg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211138	36211138	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	244	508	3	ENST00000222270.7:c.889C>T	p.Arg297Ter	p.R297*	ENST00000222270	NM_014727.1	297	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214389	36214389	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	143	427	0	ENST00000222270.7:c.3043C>T	p.Arg1015Ter	p.R1015*	ENST00000222270	NM_014727.1	1015	Cga/Tga																																																																															
CIC	23152	MSKCC	GRCh37	19	42791392	42791392	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1349864904		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	203	529	3	ENST00000575354.2:c.452C>T	p.Ala151Val	p.A151V	ENST00000575354	NM_015125.3	151	gCc/gTc																																																																															
ALK	238	MSKCC	GRCh37	2	30143165	30143165	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746089013		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	186	514	2	ENST00000389048.3:c.361C>T	p.Arg121Trp	p.R121W	ENST00000389048	NM_004304.4	121	Cgg/Tgg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39262578	39262578	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867539471		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	100	365	3	ENST00000402219.2:c.928C>T	p.Arg310Cys	p.R310C	ENST00000402219	NM_005633.3	310	Cgt/Tgt																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919836	96919836	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772153618		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	123	439	5	ENST00000258439.3:c.427G>A	p.Val143Ile	p.V143I	ENST00000258439	NM_001193304.2	143	Gtc/Atc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198285196	198285196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	138	382	3	ENST00000335508.6:c.371G>A	p.Arg124Gln	p.R124Q	ENST00000335508	NM_012433.2	124	cGg/cAg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022264	31022264	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1174760074		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	159	396	0	ENST00000375687.4:c.1749G>A	p.Trp583Ter	p.W583*	ENST00000375687	NM_015338.5	583	tgG/tgA																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259173	36259173	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	175	437	3	ENST00000300305.3:c.318G>A	p.Trp106Ter	p.W106*	ENST00000300305		106	tgG/tgA																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21340156	21340156	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1327974340		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	122	338	0	ENST00000215739.8:c.290G>A	p.Arg97Gln	p.R97Q	ENST00000215739	NM_006767.3	97	cGg/cAg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29106017	29106017	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs749963436		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	54	205	2	ENST00000328354.6:c.823G>T	p.Glu275Ter	p.E275*	ENST00000328354	NM_007194.3	275	Gaa/Taa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37092047	37092047	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs566928243		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	163	448	0	ENST00000231790.2:c.2174G>A	p.Arg725His	p.R725H	ENST00000231790	NM_000249.3	725	cGc/cAc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940402	49940402	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760399844		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	116	477	1	ENST00000296474.3:c.641G>A	p.Arg214His	p.R214H	ENST00000296474	NM_002447.2	214	cGc/cAc																																																																															
MITF	4286	MSKCC	GRCh37	3	69986988	69986988	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs994568417		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	143	401	0	ENST00000352241.4:c.370G>A	p.Glu124Lys	p.E124K	ENST00000352241	NM_198159.2	124	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	116	380	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504347	186504347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	54	247	1	ENST00000323963.5:c.684C>A	p.Phe228Leu	p.F228L	ENST00000323963		228	ttC/ttA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524362	187524362	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766902640		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	145	451	3	ENST00000441802.2:c.11318G>A	p.Arg3773His	p.R3773H	ENST00000441802	NM_005245.3	3773	cGc/cAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627747	187627747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143694311		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	175	485	2	ENST00000441802.2:c.3235G>A	p.Val1079Ile	p.V1079I	ENST00000441802	NM_005245.3	1079	Gtt/Att																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876188	35876188	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs536561203		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	154	432	3	ENST00000303115.3:c.980C>T	p.Thr327Met	p.T327M	ENST00000303115	NM_002185.3	327	aCg/aTg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86670050	86670050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	91	269	2	ENST00000274376.6:c.1847G>A	p.Cys616Tyr	p.C616Y	ENST00000274376	NM_002890.2	616	tGt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112162829	112162829	+	stop_gained	Nonsense_Mutation	SNP	T	T	G	rs863225314		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	97	307	0	ENST00000257430.4:c.1433T>G	p.Leu478Ter	p.L478*	ENST00000257430	NM_000038.5	478	tTa/tGa																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	138	456	3	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	130	489	2	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522590	176522590	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765924274		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	221	525	3	ENST00000292408.4:c.1687C>T	p.Arg563Trp	p.R563W	ENST00000292408	NM_213647.1	563	Cgg/Tgg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176687031	176687031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1164947711		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	153	489	3	ENST00000439151.2:c.5008G>A	p.Ala1670Thr	p.A1670T	ENST00000439151	NM_022455.4	1670	Gcc/Acc																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519504	137519505	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			729	46	466	3	ENST00000367739.4:c.1132_1133dup	p.Ser378ArgfsTer6	p.S378Rfs*6	ENST00000367739	NM_000416.2	378	agt/agAGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382191	152382191	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1356474609		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	117	395	0	ENST00000206249.3:c.1301G>A	p.Arg434Gln	p.R434Q	ENST00000206249	NM_000125.3	434	cGg/cAg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521999	157521999	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1258284323		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			711	199	502	2	ENST00000346085.5:c.4271C>T	p.Pro1424Leu	p.P1424L	ENST00000346085	NM_020732.3	1424	cCg/cTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2958190	2958190	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753952757		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	118	389	1	ENST00000396946.4:c.2542C>T	p.Arg848Cys	p.R848C	ENST00000396946	NM_032415.4	848	Cgc/Tgc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508673	106508673	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs554272230		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	174	466	3	ENST00000359195.3:c.667G>A	p.Val223Ile	p.V223I	ENST00000359195	NM_002649.2	223	Gtc/Atc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509514	106509514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	157	455	1	ENST00000359195.3:c.1508C>T	p.Thr503Met	p.T503M	ENST00000359195	NM_002649.2	503	aCg/aTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106515198	106515198	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146675267		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	155	374	2	ENST00000359195.3:c.2341G>A	p.Glu781Lys	p.E781K	ENST00000359195	NM_002649.2	781	Gaa/Aaa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545740	106545740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	122	406	1	ENST00000359195.3:c.3217G>A	p.Glu1073Lys	p.E1073K	ENST00000359195	NM_002649.2	1073	Gaa/Aaa																																																																															
SMO	6608	MSKCC	GRCh37	7	128849216	128849216	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755295928		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	167	413	0	ENST00000249373.3:c.1444C>T	p.Arg482Cys	p.R482C	ENST00000249373	NM_005631.4	482	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860449	151860449	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1485613651		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	215	525	4	ENST00000262189.6:c.10213C>T	p.Arg3405Ter	p.R3405*	ENST00000262189	NM_170606.2	3405	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860470	151860470	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746034306		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	186	545	5	ENST00000262189.6:c.10192C>T	p.Arg3398Trp	p.R3398W	ENST00000262189	NM_170606.2	3398	Cgg/Tgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012245	152012245	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	117	376	1	ENST00000262189.6:c.568C>T	p.Arg190Ter	p.R190*	ENST00000262189	NM_170606.2	190	Cga/Tga																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38282176	38282176	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747978107		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	152	513	1	ENST00000425967.3:c.880G>A	p.Ala294Thr	p.A294T	ENST00000425967	NM_001174067.1	294	Gcc/Acc																																																																															
LYN	4067	MSKCC	GRCh37	8	56910933	56910933	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201895605		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	133	387	0	ENST00000519728.1:c.1079G>A	p.Arg360Gln	p.R360Q	ENST00000519728	NM_002350.3	360	cGg/cAg																																																																															
MYC	4609	MSKCC	GRCh37	8	128753100	128753100	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755283006		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	203	467	2	ENST00000377970.2:c.1261G>A	p.Val421Ile	p.V421I	ENST00000377970	NM_002467.4	421	Gtc/Atc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2115967	2115967	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs281875189		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	160	423	3	ENST00000349721.2:c.3602C>T	p.Ala1201Val	p.A1201V	ENST00000349721	NM_003070.3	1201	gCg/gTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8523518	8523518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	144	432	0	ENST00000356435.5:c.686G>A	p.Arg229Gln	p.R229Q	ENST00000356435		229	cGa/cAa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570205	87570205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	150	394	2	ENST00000277120.3:c.1945G>A	p.Gly649Ser	p.G649S	ENST00000277120		649	Ggc/Agc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98232209	98232209	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs960630296		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	164	363	6	ENST00000331920.6:c.1733C>T	p.Ala578Val	p.A578V	ENST00000331920	NM_000264.3	578	gCg/gTg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900209	101900209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	127	383	4	ENST00000374994.4:c.643C>T	p.Arg215Ter	p.R215*	ENST00000374994	NM_004612.2	215	Cga/Tga																																																																															
ABL1	25	MSKCC	GRCh37	9	133760132	133760132	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373527910		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	134	414	0	ENST00000318560.5:c.2455C>T	p.Arg819Trp	p.R819W	ENST00000318560	NM_005157.4	819	Cgg/Tgg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772713	135772713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	172	502	0	ENST00000298552.3:c.2833G>A	p.Glu945Lys	p.E945K	ENST00000298552	NM_001162426.1	945	Gag/Aag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391907	139391907	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756874994		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	189	490	4	ENST00000277541.6:c.6284G>A	p.Arg2095His	p.R2095H	ENST00000277541	NM_017617.3	2095	cGc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519912		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	205	233	1	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81819769	81819769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	152	428	2	ENST00000359376.3:c.175G>A	p.Asp59Asn	p.D59N	ENST00000359376	NM_002661.3	59	Gac/Aac																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257220	16257220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	151	526	5	ENST00000375759.3:c.4485G>T	p.Met1495Ile	p.M1495I	ENST00000375759	NM_015001.2	1495	atG/atT																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598837	28598837	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs778891128		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	194	474	4	ENST00000253063.3:c.397A>G	p.Met133Val	p.M133V	ENST00000253063	NM_031459.4	133	Atg/Gtg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932163	36932163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765499767		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			718	207	631	0	ENST00000361632.4:c.2306G>A	p.Arg769His	p.R769H	ENST00000361632		769	cGc/cAc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46724419	46724419	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	102	370	3	ENST00000371975.4:c.271+1G>A		p.X91_splice	ENST00000371975	NM_003579.3	91																																																																																
JAK1	3716	MSKCC	GRCh37	1	65301788	65301788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	137	344	1	ENST00000342505.4:c.3251C>T	p.Pro1084Leu	p.P1084L	ENST00000342505	NM_002227.2	1084	cCc/cTc																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150921985	150921985	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	150	411	2	ENST00000271640.5:c.1564A>C	p.Ile522Leu	p.I522L	ENST00000271640	NM_001145415.1	522	Atc/Ctc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175996762	175996762	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	141	457	0	ENST00000367669.3:c.1675T>G	p.Cys559Gly	p.C559G	ENST00000367669	NM_022457.5	559	Tgc/Ggc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692999	89692999	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	94	348	2	ENST00000371953.3:c.483A>C	p.Arg161Ser	p.R161S	ENST00000371953	NM_000314.4	161	agA/agC																																																																															
SUFU	51684	MSKCC	GRCh37	10	104268928	104268928	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	147	412	1	ENST00000369902.3:c.185T>C	p.Leu62Ser	p.L62S	ENST00000369902	NM_016169.3	62	tTg/tCg																																																																															
HRAS	3265	MSKCC	GRCh37	11	532716	532716	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779101895		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	152	381	1	ENST00000311189.7:c.490C>T	p.Arg164Trp	p.R164W	ENST00000311189		164	Cgg/Tgg																																																																															
HRAS	3265	MSKCC	GRCh37	11	534270	534270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	165	416	0	ENST00000311189.7:c.53C>T	p.Ala18Val	p.A18V	ENST00000311189		18	gCg/gTg																																																																															
CTR9	9646	MSKCC	GRCh37	11	10778341	10778341	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	118	317	1	ENST00000361367.2:c.548T>G	p.Leu183Arg	p.L183R	ENST00000361367	NM_014633.3	183	cTt/cGt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741723	17741723	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777251396		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	142	490	2	ENST00000250003.3:c.394C>T	p.Leu132Phe	p.L132F	ENST00000250003	NM_002478.4	132	Ctc/Ttc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946951	71946951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	197	488	0	ENST00000298229.2:c.2800G>A	p.Glu934Lys	p.E934K	ENST00000298229	NM_001567.3	934	Gaa/Aaa																																																																															
BIRC3	330	MSKCC	GRCh37	11	102206789	102206789	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	136	348	1	ENST00000263464.3:c.1417A>C	p.Ile473Leu	p.I473L	ENST00000263464	NM_001165.4	473	Att/Ctt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118382666	118382666	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	124	365	1	ENST00000534358.1:c.11072A>G	p.Asp3691Gly	p.D3691G	ENST00000534358	NM_005933.3	3691	gAt/gGt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18719898	18719898	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs759134545		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	93	327	0	ENST00000266497.5:c.3795G>A	p.Trp1265Ter	p.W1265*	ENST00000266497		1265	tgG/tgA																																																																															
RECQL	5965	MSKCC	GRCh37	12	21627910	21627910	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1176731657		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	79	320	0	ENST00000421138.2:c.1220G>A	p.Arg407Gln	p.R407Q	ENST00000421138		407	cGa/cAa																																																																															
POLE	5426	MSKCC	GRCh37	12	133218278	133218278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	160	415	2	ENST00000320574.5:c.5333C>T	p.Ala1778Val	p.A1778V	ENST00000320574	NM_006231.2	1778	gCc/gTc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28609712	28609712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	143	424	1	ENST00000241453.7:c.1517C>T	p.Ala506Val	p.A506V	ENST00000241453	NM_004119.2	506	gCc/gTc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001971	29001971	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	145	376	0	ENST00000282397.4:c.1194G>T	p.Glu398Asp	p.E398D	ENST00000282397	NM_002019.4	398	gaG/gaT																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953980	32953980	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866403625		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	102	333	3	ENST00000380152.3:c.9047C>T	p.Ser3016Phe	p.S3016F	ENST00000380152		3016	tCt/tTt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060619	38060619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			832	249	670	1	ENST00000250448.2:c.1370C>T	p.Pro457Leu	p.P457L	ENST00000250448	NM_004496.3	457	cCg/cTg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609325	81609325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	137	405	1	ENST00000298171.2:c.923G>A	p.Ser308Asn	p.S308N	ENST00000298171	NM_000369.2	308	aGc/aAc																																																																															
AKT1	207	MSKCC	GRCh37	14	105243089	105243089	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751243134		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	172	432	2	ENST00000349310.3:c.194C>T	p.Thr65Met	p.T65M	ENST00000349310	NM_001014432.1	65	aCg/aTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42059362	42059362	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	217	555	1	ENST00000219905.7:c.9082A>C	p.Met3028Leu	p.M3028L	ENST00000219905	NM_001164273.1	3028	Atg/Ctg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43771595	43771595	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	139	444	2	ENST00000382044.4:c.788G>A	p.Arg263Lys	p.R263K	ENST00000382044	NM_001141980.1	263	aGg/aAg																																																																															
B2M	567	MSKCC	GRCh37	15	45007720	45007720	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	105	475	0	ENST00000558401.1:c.167A>G	p.Glu56Gly	p.E56G	ENST00000558401	NM_004048.2	56	gAa/gGa																																																																															
B2M	567	MSKCC	GRCh37	15	45007833	45007833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	168	441	3	ENST00000558401.1:c.280G>A	p.Glu94Lys	p.E94K	ENST00000558401	NM_004048.2	94	Gaa/Aaa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479777	67479777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	186	412	2	ENST00000327367.4:c.1084G>A	p.Ala362Thr	p.A362T	ENST00000327367	NM_005902.3	362	Gct/Act																																																																															
CD276	80381	MSKCC	GRCh37	15	73996314	73996314	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780867163		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	39	103	0	ENST00000318443.5:c.1048G>A	p.Ala350Thr	p.A350T	ENST00000318443	NM_001024736.1	350	Gct/Act																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225917	2225917	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	197	464	3	ENST00000326181.6:c.1709A>G	p.His570Arg	p.H570R	ENST00000326181	NM_032271.2	570	cAc/cGc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779233	3779233	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	150	462	1	ENST00000262367.5:c.5815A>G	p.Thr1939Ala	p.T1939A	ENST00000262367	NM_004380.2	1939	Acc/Gcc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991673	72991673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	184	555	0	ENST00000268489.5:c.2372G>A	p.Gly791Glu	p.G791E	ENST00000268489	NM_006885.3	791	gGg/gAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346283	89346283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	190	492	2	ENST00000301030.4:c.6667G>A	p.Ala2223Thr	p.A2223T	ENST00000301030	NM_001256183.1	2223	Gcg/Acg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350811	89350811	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	137	441	0	ENST00000301030.4:c.2139A>C	p.Lys713Asn	p.K713N	ENST00000301030	NM_001256183.1	713	aaA/aaC																																																																															
FANCA	2175	MSKCC	GRCh37	16	89858418	89858418	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770809996		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	184	445	0	ENST00000389301.3:c.1142C>T	p.Thr381Met	p.T381M	ENST00000389301	NM_000135.2	381	aCg/aTg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216750	7216750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	183	528	0	ENST00000380728.2:c.673C>T	p.Pro225Ser	p.P225S	ENST00000380728		225	Cca/Tca																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16089979	16089979	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747285406		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	119	312	0	ENST00000268712.3:c.131G>A	p.Arg44His	p.R44H	ENST00000268712	NM_006311.3	44	cGt/cAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29508500	29508500	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199474756		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	93	283	2	ENST00000358273.4:c.647T>C	p.Leu216Pro	p.L216P	ENST00000358273	NM_001042492.2	216	cTg/cCg																																																																															
NF1	4763	MSKCC	GRCh37	17	29548933	29548934	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	27	144	0	ENST00000358273.4:c.1711dup	p.Trp571LeufsTer4	p.W571Lfs*4	ENST00000358273	NM_001042492.2	569	-/T																																																																															
NF1	4763	MSKCC	GRCh37	17	29550472	29550473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	59	283	0	ENST00000358273.4:c.1738dup	p.Tyr580LeufsTer8	p.Y580Lfs*8	ENST00000358273	NM_001042492.2	578	ctt/cTtt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37649126	37649126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	127	314	1	ENST00000447079.4:c.2231C>T	p.Ala744Val	p.A744V	ENST00000447079	NM_015083.1	744	gCc/gTc																																																																															
RARA	5914	MSKCC	GRCh37	17	38512456	38512456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	149	432	1	ENST00000254066.5:c.1367G>A	p.Ser456Asn	p.S456N	ENST00000254066	NM_000964.3	456	aGc/aAc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41242973	41242973	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	153	428	3	ENST00000357654.3:c.4173T>G	p.Ile1391Met	p.I1391M	ENST00000357654	NM_007294.3	1391	atT/atG																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78923293	78923293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	189	413	1	ENST00000306801.3:c.3316C>T	p.Pro1106Ser	p.P1106S	ENST00000306801	NM_020761.2	1106	Cca/Tca																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61323171	61323171	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377088096		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	112	310	0	ENST00000283752.5:c.893C>T	p.Thr298Met	p.T298M	ENST00000283752	NM_006919.2	298	aCg/aTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1223171	1223171	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs747655835		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	141	411	0	ENST00000326873.7:c.1108G>A	p.Gly370Arg	p.G370R	ENST00000326873	NM_000455.4	370	Gga/Aga																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6262264	6262264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	157	402	2	ENST00000252674.7:c.251C>T	p.Pro84Leu	p.P84L	ENST00000252674	NM_005934.3	84	cCc/cTc																																																																															
INSR	3643	MSKCC	GRCh37	19	7141701	7141701	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs979757589		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	153	385	0	ENST00000302850.5:c.2669G>A	p.Arg890Gln	p.R890Q	ENST00000302850	NM_000208.2	890	cGa/cAa																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626957	14626957	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs764609404		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			770	108	496	0	ENST00000254322.2:c.818T>C	p.Val273Ala	p.V273A	ENST00000254322	NM_006145.1	273	gTc/gCc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366114	15366114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	115	327	1	ENST00000263377.2:c.2041C>T	p.Pro681Ser	p.P681S	ENST00000263377	NM_058243.2	681	Cct/Tct																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943489	17943489	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140837014		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	156	467	0	ENST00000458235.1:c.2519G>A	p.Arg840His	p.R840H	ENST00000458235	NM_000215.3	840	cGc/cAc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976507	18976507	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779178179		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	182	470	1	ENST00000262803.5:c.3157G>A	p.Ala1053Thr	p.A1053T	ENST00000262803	NM_002911.3	1053	Gcc/Acc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45872335	45872335	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1176128995		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			767	207	567	2	ENST00000391945.4:c.176A>G	p.Tyr59Cys	p.Y59C	ENST00000391945	NM_000400.3	59	tAc/tGc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424777	47424777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	172	446	1	ENST00000404338.3:c.2845G>A	p.Glu949Lys	p.E949K	ENST00000404338	NM_004491.4	949	Gag/Aag																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025870	48025870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	177	468	4	ENST00000234420.5:c.748G>A	p.Val250Ile	p.V250I	ENST00000234420	NM_000179.2	250	Gtc/Atc																																																																															
REL	5966	MSKCC	GRCh37	2	61149528	61149528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	135	441	1	ENST00000295025.8:c.1718G>A	p.Ser573Asn	p.S573N	ENST00000295025	NM_002908.2	573	aGc/aAc																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631430	67631430	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	85	399	0	ENST00000272342.5:c.1616A>G	p.Asn539Ser	p.N539S	ENST00000272342	NM_019002.3	539	aAt/aGt																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873230	136873230	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	178	503	1	ENST00000241393.3:c.268A>G	p.Thr90Ala	p.T90A	ENST00000241393	NM_003467.2	90	Acg/Gcg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660184	227660184	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1243671316		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	182	513	2	ENST00000305123.5:c.3271G>A	p.Asp1091Asn	p.D1091N	ENST00000305123	NM_005544.2	1091	Gac/Aac																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662985	227662985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	173	431	0	ENST00000305123.5:c.470G>A	p.Gly157Glu	p.G157E	ENST00000305123	NM_005544.2	157	gGa/gAa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31393185	31393185	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	143	397	2	ENST00000328111.2:c.2273A>G	p.Asp758Gly	p.D758G	ENST00000328111	NM_006892.3	758	gAc/gGc																																																																															
ERG	2078	MSKCC	GRCh37	21	39764367	39764367	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	116	348	2	ENST00000288319.7:c.746-1G>T		p.X249_splice	ENST00000288319	NM_182918.3	249																																																																																
ZNRF3	84133	MSKCC	GRCh37	22	29446666	29446666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	168	487	0	ENST00000544604.2:c.2497C>T	p.Pro833Ser	p.P833S	ENST00000544604	NM_001206998.1	833	Cca/Tca																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713436	30713436	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751948498		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	186	532	3	ENST00000359013.4:c.836G>A	p.Arg279His	p.R279H	ENST00000359013	NM_001024847.2	279	cGc/cAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266514	41266514	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	164	411	1	ENST00000349496.5:c.311A>G	p.Asp104Gly	p.D104G	ENST00000349496	NM_001904.3	104	gAt/gGt																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63968653	63968653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	155	345	3	ENST00000295900.6:c.1051G>A	p.Asp351Asn	p.D351N	ENST00000295900	NM_000333.3	351	Gat/Aat																																																																															
ALB	213	MSKCC	GRCh37	4	74272394	74272394	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs763937998		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	113	354	1	ENST00000295897.4:c.186T>G	p.Asp62Glu	p.D62E	ENST00000295897	NM_000477.5	62	gaT/gaG																																																																															
FAT1	2195	MSKCC	GRCh37	4	187558008	187558008	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	147	464	2	ENST00000441802.2:c.3703A>G	p.Ile1235Val	p.I1235V	ENST00000441802	NM_005245.3	1235	Atc/Gtc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31448660	31448660	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	96	355	3	ENST00000344624.3:c.2876C>A	p.Pro959His	p.P959H	ENST00000344624		959	cCc/cAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160751	56160751	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	127	430	0	ENST00000399503.3:c.1025T>C	p.Ile342Thr	p.I342T	ENST00000399503	NM_005921.1	342	aTt/aCt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149499037	149499037	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759258072		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	167	426	5	ENST00000261799.4:c.2791G>A	p.Asp931Asn	p.D931N	ENST00000261799	NM_002609.3	931	Gac/Aac																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513172	149513172	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs760689123		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	166	415	0	ENST00000261799.4:c.911A>G	p.Lys304Arg	p.K304R	ENST00000261799	NM_002609.3	304	aAg/aGg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815743	32815743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	167	451	1	ENST00000354258.4:c.1873G>A	p.Asp625Asn	p.D625N	ENST00000354258	NM_000593.5	625	Gat/Aat																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288626	33288626	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	154	489	3	ENST00000374542.5:c.926T>C	p.Leu309Pro	p.L309P	ENST00000374542	NM_001141970.1	309	cTc/cCc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026649	6026649	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	122	442	4	ENST00000265849.7:c.1747G>T	p.Glu583Ter	p.E583*	ENST00000265849	NM_000535.5	583	Gaa/Taa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513022	106513022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	112	374	3	ENST00000359195.3:c.2036G>A	p.Arg679Lys	p.R679K	ENST00000359195	NM_002649.2	679	aGa/aAa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372518	55372518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	135	470	2	ENST00000297316.4:c.1208G>A	p.Ser403Asn	p.S403N	ENST00000297316	NM_022454.3	403	aGc/aAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69002822	69002822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	128	345	2	ENST00000288368.4:c.2122G>A	p.Ala708Thr	p.A708T	ENST00000288368	NM_024870.2	708	Gct/Act																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70971072	70971072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	122	372	1	ENST00000276594.2:c.1189G>A	p.Ala397Thr	p.A397T	ENST00000276594	NM_024504.3	397	Gca/Aca																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978573	70978573	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	165	477	1	ENST00000276594.2:c.1080A>C	p.Gln360His	p.Q360H	ENST00000276594	NM_024504.3	360	caA/caC																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980506	70980506	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1210022082		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	144	467	0	ENST00000276594.2:c.871A>G	p.Ser291Gly	p.S291G	ENST00000276594	NM_024504.3	291	Agt/Ggt																																																																															
RAD21	5885	MSKCC	GRCh37	8	117875482	117875482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	68	375	0	ENST00000297338.2:c.161G>A	p.Arg54Gln	p.R54Q	ENST00000297338	NM_006265.2	54	cGg/cAg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141549472	141549472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1285375898		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	149	394	2	ENST00000220592.5:c.2116G>A	p.Val706Met	p.V706M	ENST00000220592	NM_012154.3	706	Gtg/Atg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141570592	141570592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	219	459	0	ENST00000220592.5:c.536G>A	p.Arg179His	p.R179H	ENST00000220592	NM_012154.3	179	cGc/cAc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737935	145737936	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	169	606	0	ENST00000428558.2:c.2894_2895insA	p.Leu966PhefsTer11	p.L966Ffs*11	ENST00000428558	NM_004260.3	965	cct/ccAt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739334	145739334	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750457453		P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	151	397	1	ENST00000428558.2:c.2036C>T	p.Ser679Phe	p.S679F	ENST00000428558	NM_004260.3	679	tCc/tTc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126768	5126768	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	91	390	0	ENST00000381652.3:c.3376A>C	p.Ile1126Leu	p.I1126L	ENST00000381652	NM_004972.3	1126	Ata/Cta																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518040	8518040	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	131	391	1	ENST00000356435.5:c.1351T>A	p.Tyr451Asn	p.Y451N	ENST00000356435		451	Tat/Aat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528655	8528655	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	136	424	2	ENST00000356435.5:c.477G>A	p.Trp159Ter	p.W159*	ENST00000356435		159	tgG/tgA																																																																															
TEK	7010	MSKCC	GRCh37	9	27229166	27229166	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	122	308	1	ENST00000380036.4:c.3311A>G	p.Asn1104Ser	p.N1104S	ENST00000380036	NM_000459.3	1104	aAt/aGt																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128434726	128434726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	144	378	3	ENST00000265960.3:c.128C>T	p.Pro43Leu	p.P43L	ENST00000265960	NM_001006617.1	43	cCt/cTt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53241088	53241088	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0072910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	142	183	2	ENST00000375401.3:c.1123G>A	p.Glu375Lys	p.E375K	ENST00000375401	NM_004187.3	375	Gag/Aag																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074255	8074255	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			835	169	516	0	ENST00000377482.5:c.404del	p.Asn135ThrfsTer40	p.N135Tfs*40	ENST00000377482	NM_018948.3	135	aAc/ac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			848	166	520	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206651613	206651613	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782254432		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			813	172	517	0	ENST00000367120.3:c.923G>A	p.Arg308Gln	p.R308Q	ENST00000367120	NM_014002.3	308	cGa/cAa																																																																															
C1orf147	574431	MSKCC	GRCh37	1	206666385	206666385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199747005		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			792	184	422	2	ENST00000367119.1:c.149C>T	p.Ala50Val	p.A50V	ENST00000367119		50	gCg/gTg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123325147	123325147	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1354205157		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			714	170	459	0	ENST00000358487.5:c.181C>T	p.Arg61Cys	p.R61C	ENST00000358487	NM_000141.4	61	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424442	49424443	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs797044740		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	127	432	1	ENST00000301067.7:c.13780dup	p.Ala4594GlyfsTer12	p.A4594Gfs*12	ENST00000301067	NM_003482.3	4594	gcc/gGcc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281222	49281222	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147650408		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	74	414	0	ENST00000282018.3:c.269C>T	p.Thr90Met	p.T90M	ENST00000282018	NM_020377.2	90	aCg/aTg																																																																															
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	154	350	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2112580	2112580	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45486591		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			751	179	471	0	ENST00000219476.3:c.1340C>T	p.Ala447Val	p.A447V	ENST00000219476	NM_000548.3	447	gCg/gTg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222203	2222203	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751318317		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			790	170	470	0	ENST00000326181.6:c.487G>A	p.Val163Met	p.V163M	ENST00000326181	NM_032271.2	163	Gtg/Atg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274172	10274173	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	108	325	0	ENST00000330684.3:c.96dup	p.Ala33ArgfsTer105	p.A33Rfs*105	ENST00000330684	NM_001134407.1	32	-/C																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			783	129	452	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			993	170	555	2	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004601	16004601	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1406850631		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			774	175	444	0	ENST00000268712.3:c.2653G>A	p.Ala885Thr	p.A885T	ENST00000268712	NM_006311.3	885	Gct/Act																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	146	415	2	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			913	136	525	4	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																															
EZH1	2145	MSKCC	GRCh37	17	40858039	40858039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	162	403	0	ENST00000428826.2:c.1825C>T	p.Arg609Cys	p.R609C	ENST00000428826		609	Cgt/Tgt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245586	41245587	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs80357853		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	42	335	3	ENST00000357654.3:c.1961dup	p.Tyr655ValfsTer18	p.Y655Vfs*18	ENST00000357654	NM_007294.3	654	aag/aaAg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246532	41246532	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs80357618		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	83	394	1	ENST00000357654.3:c.1016del	p.Lys339ArgfsTer2	p.K339Rfs*2	ENST00000357654	NM_007294.3	339	aAg/ag																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs758630849		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	76	348	0	ENST00000305921.3:c.1349del	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220604	1220604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			763	166	446	1	ENST00000326873.7:c.622G>A	p.Asp208Asn	p.D208N	ENST00000326873	NM_000455.4	208	Gac/Aac																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244196	5244196	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs919253826		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	123	488	0	ENST00000357368.4:c.1286C>T	p.Ala429Val	p.A429V	ENST00000357368	NM_002850.3	429	gCg/gTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7293878	7293878	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			913	209	581	0	ENST00000302850.5:c.25del	p.Ala9ArgfsTer56	p.A9Rfs*56	ENST00000302850	NM_000208.2	9	Gcg/cg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265344	10265344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1227919940		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			783	143	549	0	ENST00000340748.4:c.1702G>A	p.Gly568Arg	p.G568R	ENST00000340748		568	Ggg/Agg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097624	11097625	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1165714406		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			741	153	468	1	ENST00000344626.4:c.810dup	p.Gly271ArgfsTer16	p.G271Rfs*16	ENST00000344626	NM_003072.3	268	-/C																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223858	36223858	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			914	186	522	0	ENST00000222270.7:c.6413del	p.Pro2138ArgfsTer15	p.P2138Rfs*15	ENST00000222270	NM_014727.1	2136	ctC/ct																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			911	174	532	0	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383353	42383353	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs548487112		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			727	143	422	0	ENST00000221972.3:c.373G>A	p.Val125Met	p.V125M	ENST00000221972	NM_021601.3	125	Gtg/Atg																																																																															
ERF	2077	MSKCC	GRCh37	19	42752804	42752804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1286494808		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			865	154	558	0	ENST00000222329.4:c.1460G>A	p.Arg487His	p.R487H	ENST00000222329	NM_006494.2	487	cGc/cAc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503884	47503884	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			828	144	445	3	ENST00000404338.3:c.4444del	p.Gln1482SerfsTer317	p.Q1482Sfs*317	ENST00000404338	NM_004491.4	1480	aCc/ac																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463248	25463248	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754613602		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			991	53	539	0	ENST00000264709.3:c.2245C>T	p.Arg749Cys	p.R749C	ENST00000264709	NM_175629.2	749	Cgc/Tgc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC	rs1361078163		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	38	496	0	ENST00000234420.5:c.3260_3261dup	p.Phe1088ProfsTer3	p.F1088Pfs*3	ENST00000234420	NM_000179.2	1085	acc/aCCcc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			960	173	500	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326487	62326487	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs6062495		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			801	206	496	0	ENST00000482936.1:c.3412C>T	p.Arg1138Trp	p.R1138W	ENST00000482936		1138	Cgg/Tgg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655272	45655272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764295138		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			752	167	414	0	ENST00000407780.3:c.580C>T	p.Arg194Trp	p.R194W	ENST00000407780	NM_001283052.1	194	Cgg/Tgg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21348256	21348256	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587777180		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			786	155	526	0	ENST00000215739.8:c.1397G>A	p.Arg466Gln	p.R466Q	ENST00000215739	NM_006767.3	466	cGg/cAg																																																																															
KDR	3791	MSKCC	GRCh37	4	55991433	55991433	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375186728		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	113	350	0	ENST00000263923.4:c.28G>A	p.Ala10Thr	p.A10T	ENST00000263923	NM_002253.2	10	Gcc/Acc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630605	187630605	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	118	451	0	ENST00000441802.2:c.377del	p.Asn126IlefsTer20	p.N126Ifs*20	ENST00000441802	NM_005245.3	126	aAt/at																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120318	94120318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	99	395	0	ENST00000369303.4:c.733G>T	p.Ala245Ser	p.A245S	ENST00000369303	NM_004440.3	245	Gcc/Tcc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012386	152012386	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	49	265	0	ENST00000262189.6:c.427del	p.Ser143ValfsTer3	p.S143Vfs*3	ENST00000262189	NM_170606.2	143	Agt/gt																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346220	152346220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	66	354	9	ENST00000359321.1:c.350del	p.Leu117TrpfsTer17	p.L117Wfs*17	ENST00000359321	NM_005431.1	117	tTg/tg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864663	68864663	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773560075		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	65	274	0	ENST00000288368.4:c.34G>A	p.Glu12Lys	p.E12K	ENST00000288368	NM_024870.2	12	Gag/Aag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209319	98209319	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56161606		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	132	543	0	ENST00000331920.6:c.4219G>A	p.Gly1407Ser	p.G1407S	ENST00000331920	NM_000264.3	1407	Ggc/Agc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	119	329	3	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2491367	2491367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1174063551		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			767	176	458	0	ENST00000355716.4:c.410C>T	p.Ala137Val	p.A137V	ENST00000355716	NM_003820.2	137	gCg/gTg																																																																															
RET	5979	MSKCC	GRCh37	10	43600618	43600618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	124	461	0	ENST00000355710.3:c.844G>A	p.Val282Met	p.V282M	ENST00000355710	NM_020975.4	282	Gtg/Atg																																																																															
RET	5979	MSKCC	GRCh37	10	43610071	43610071	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			846	152	575	0	ENST00000355710.3:c.2023A>G	p.Thr675Ala	p.T675A	ENST00000355710	NM_020975.4	675	Acc/Gcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428605	49428605	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			877	170	558	0	ENST00000301067.7:c.10345G>T	p.Gly3449Cys	p.G3449C	ENST00000301067	NM_003482.3	3449	Ggt/Tgt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117375	115117375	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	132	395	0	ENST00000257566.3:c.799A>G	p.Thr267Ala	p.T267A	ENST00000257566	NM_016569.3	267	Aca/Gca																																																																															
RAB35	11021	MSKCC	GRCh37	12	120535099	120535099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373426549		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			851	168	433	0	ENST00000229340.5:c.556G>A	p.Asp186Asn	p.D186N	ENST00000229340	NM_006861.6	186	Gat/Aat																																																																															
B2M	567	MSKCC	GRCh37	15	45007671	45007672	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	125	354	0	ENST00000558401.1:c.118_119del	p.Ser40LysfsTer16	p.S40Kfs*16	ENST00000558401	NM_004048.2	40	TCa/a																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628047	90628048	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			784	188	505	1	ENST00000330062.3:c.1271dup	p.Asn424LysfsTer56	p.N424Kfs*56	ENST00000330062	NM_002168.2	424	aat/aaAt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530132	63530132	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	190	326	0	ENST00000307078.5:c.2303A>C	p.Tyr768Ser	p.Y768S	ENST00000307078	NM_004655.3	768	tAc/tCc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221279	1221279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			944	188	537	0	ENST00000326873.7:c.802G>A	p.Gly268Arg	p.G268R	ENST00000326873	NM_000455.4	268	Ggg/Agg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5208049	5208049	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			752	144	554	0	ENST00000357368.4:c.5662G>T	p.Gly1888Cys	p.G1888C	ENST00000357368	NM_002850.3	1888	Ggc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228037	36228037	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			854	171	492	0	ENST00000222270.7:c.7423C>A	p.Leu2475Met	p.L2475M	ENST00000222270	NM_014727.1	2475	Ctg/Atg																																																																															
CIC	23152	MSKCC	GRCh37	19	42797369	42797369	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753703401		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			914	180	523	0	ENST00000575354.2:c.3731G>A	p.Arg1244Gln	p.R1244Q	ENST00000575354	NM_015125.3	1244	cGg/cAg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39725983	39725983	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	27	251	0	ENST00000361337.2:c.852+2T>C		p.X284_splice	ENST00000361337	NM_003286.2	284																																																																																
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62311237	62311237	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs760939207		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			715	152	431	1	ENST00000482936.1:c.1073C>T	p.Thr358Met	p.T358M	ENST00000482936		358	aCg/aTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268090	153268090	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	102	343	0	ENST00000281708.4:c.718del	p.Met240CysfsTer14	p.M240Cfs*14	ENST00000281708	NM_033632.3	240	Atg/tg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630191	187630191	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			802	166	504	0	ENST00000441802.2:c.791C>A	p.Pro264Gln	p.P264Q	ENST00000441802	NM_005245.3	264	cCa/cAa																																																																															
SDHA	6389	MSKCC	GRCh37	5	235339	235339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373067620		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	134	380	0	ENST00000264932.6:c.1145G>A	p.Gly382Asp	p.G382D	ENST00000264932	NM_004168.2	382	gGc/gAc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192624	138192624	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			810	151	412	0	ENST00000237289.4:c.260G>T	p.Arg87Leu	p.R87L	ENST00000237289	NM_001270507.1	87	cGa/cTa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38172977	38172977	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185827074		P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	34	334	0	ENST00000317025.8:c.2072C>T	p.Ser691Leu	p.S691L	ENST00000317025	NM_023034.1	691	tCg/tTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76939447	76939447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	59	150	0	ENST00000373344.5:c.1301T>C	p.Val434Ala	p.V434A	ENST00000373344	NM_000489.3	434	gTc/gCc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225264		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	127	374	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258889	16258889	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			732	164	507	1	ENST00000375759.3:c.6158del	p.Asn2053ThrfsTer11	p.N2053Tfs*11	ENST00000375759	NM_015001.2	2052	Aaa/aa																																																																															
PARP1	142	MSKCC	GRCh37	1	226555216	226555216	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374662166		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	93	342	0	ENST00000366794.5:c.2371G>A	p.Asp791Asn	p.D791N	ENST00000366794	NM_001618.3	791	Gat/Aat																																																																															
HRAS	3265	MSKCC	GRCh37	11	533500	533500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs772211333		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	160	429	0	ENST00000311189.7:c.403C>T	p.Arg135Ter	p.R135*	ENST00000311189		135	Cga/Tga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427404	427404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	142	407	0	ENST00000399788.2:c.2765T>C	p.Met922Thr	p.M922T	ENST00000399788	NM_001042603.1	922	aTg/aCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434005	49434005	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	128	453	0	ENST00000301067.7:c.7548del	p.Asn2517IlefsTer26	p.N2517Ifs*26	ENST00000301067	NM_003482.3	2516	ccC/cc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856545	111856545	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1157707616		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	103	401	0	ENST00000341259.2:c.596C>T	p.Ala199Val	p.A199V	ENST00000341259	NM_005475.2	199	gCg/gTg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885886	111885886	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs781623667		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	145	499	0	ENST00000341259.2:c.1508C>A	p.Ser503Tyr	p.S503Y	ENST00000341259	NM_005475.2	503	tCt/tAt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95595941	95595941	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749484792		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	72	177	0	ENST00000343455.3:c.602G>A	p.Arg201His	p.R201H	ENST00000343455	NM_177438.2	201	cGc/cAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916248	9916248	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397518472		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	107	378	0	ENST00000330684.3:c.2041C>T	p.Arg681Ter	p.R681*	ENST00000330684	NM_001134407.1	681	Cga/Tga																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	159	443	0	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																															
RARA	5914	MSKCC	GRCh37	17	38510627	38510627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	133	384	0	ENST00000254066.5:c.881G>A	p.Arg294Gln	p.R294Q	ENST00000254066	NM_000964.3	294	cGg/cAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	247	493	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223014	5223014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	86	369	0	ENST00000357368.4:c.2789G>A	p.Gly930Asp	p.G930D	ENST00000357368	NM_002850.3	930	gGc/gAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144468	11144468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	106	296	0	ENST00000344626.4:c.3800G>A	p.Gly1267Asp	p.G1267D	ENST00000344626	NM_003072.3	1267	gGc/gAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299803	15299803	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370186772		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	145	426	0	ENST00000263388.2:c.1375G>A	p.Ala459Thr	p.A459T	ENST00000263388	NM_000435.2	459	Gca/Aca																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	116	389	1	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227851	36227851	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	153	481	0	ENST00000222270.7:c.7336C>T	p.Arg2446Ter	p.R2446*	ENST00000222270	NM_014727.1	2446	Cga/Tga																																																																															
ALK	238	MSKCC	GRCh37	2	29451784	29451784	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772809305		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	34	166	0	ENST00000389048.3:c.2781del	p.Cys928AlafsTer11	p.C928Afs*11	ENST00000389048	NM_004304.4	927	ggG/gg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660499	227660499	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767686104		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	97	404	0	ENST00000305123.5:c.2956C>T	p.Arg986Trp	p.R986W	ENST00000305123	NM_005544.2	986	Cgg/Tgg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	103	440	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664844	138664844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	62	207	0	ENST00000330315.3:c.721G>A	p.Ala241Thr	p.A241T	ENST00000330315	NM_023067.3	241	Gcg/Acg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	93	290	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TERT	7015	MSKCC	GRCh37	5	1294025	1294025	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1030156757		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	113	427	0	ENST00000310581.5:c.976G>A	p.Ala326Thr	p.A326T	ENST00000310581	NM_198253.2	326	Gcc/Acc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	72	176	0	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112177863	112177864	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	73	267	0	ENST00000257430.4:c.6579dup	p.Val2194SerfsTer3	p.V2194Sfs*3	ENST00000257430	NM_000038.5	2191	gga/ggAa																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225776	26225776	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1186783518		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			702	172	490	0	ENST00000360408.1:c.394C>T	p.Arg132Cys	p.R132C	ENST00000360408	NM_003532.2	132	Cgt/Tgt																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815712	32815712	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1374606443		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	114	341	0	ENST00000354258.4:c.1904G>A	p.Arg635His	p.R635H	ENST00000354258	NM_000593.5	635	cGc/cAc																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519505	137519506	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs780346130		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	123	361	10	ENST00000367739.4:c.1132_1133del	p.Ser378PhefsTer6	p.S378Ffs*6	ENST00000367739	NM_000416.2	378	AGt/t																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959066	2959066	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772566311		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	88	367	0	ENST00000396946.4:c.2450C>T	p.Ala817Val	p.A817V	ENST00000396946	NM_032415.4	817	gCg/gTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	83	257	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	76	265	0	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742129	145742129	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1471747772		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	111	365	0	ENST00000428558.2:c.374G>A	p.Arg125His	p.R125H	ENST00000428558	NM_004260.3	125	cGc/cAc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206651178	206651179	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	109	424	0	ENST00000367120.3:c.792dup	p.Ile265HisfsTer40	p.I265Hfs*40	ENST00000367120	NM_014002.3	263	ctc/ctCc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64574565	64574565	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1060499973		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	133	389	0	ENST00000337652.1:c.845C>A	p.Pro282His	p.P282H	ENST00000337652	NM_130803.2	282	cCc/cAc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245780	46245780	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	113	325	0	ENST00000334344.6:c.3874A>C	p.Ser1292Arg	p.S1292R	ENST00000334344	NM_152641.2	1292	Agt/Cgt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779446	3779446	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886039491		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	118	449	0	ENST00000262367.5:c.5602C>T	p.Arg1868Trp	p.R1868W	ENST00000262367	NM_004380.2	1868	Cgg/Tgg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37871725	37871725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	173	447	0	ENST00000269571.5:c.1249G>A	p.Asp417Asn	p.D417N	ENST00000269571		417	Gac/Aac																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266834	18266834	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1022260890		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	83	366	0	ENST00000222254.8:c.145C>T	p.Arg49Cys	p.R49C	ENST00000222254	NM_005027.3	49	Cgc/Tgc																																																																															
AXL	558	MSKCC	GRCh37	19	41763428	41763428	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766261407		P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	115	393	0	ENST00000301178.4:c.2227G>A	p.Ala743Thr	p.A743T	ENST00000301178	NM_021913.4	743	Gcc/Acc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72864499	72864499	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	49	155	0	ENST00000325599.8:c.936+2T>C		p.X312_splice	ENST00000325599	NM_018130.2	312																																																																																
GSK3B	2932	MSKCC	GRCh37	3	119624602	119624602	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	83	252	0	ENST00000316626.5:c.813G>T	p.Lys271Asn	p.K271N	ENST00000316626		271	aaG/aaT																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191534	185191534	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	163	408	0	ENST00000265026.3:c.2416del	p.Arg806GlyfsTer18	p.R806Gfs*18	ENST00000265026	NM_004721.4	805	acA/ac																																																																															
TET2	54790	MSKCC	GRCh37	4	106156331	106156332	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	165	492	0	ENST00000380013.4:c.1234_1235del	p.Leu412SerfsTer30	p.L412Sfs*30	ENST00000380013	NM_001127208.2	411	cCT/c																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155572	56155572	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	106	269	0	ENST00000399503.3:c.664G>T	p.Gly222Ter	p.G222*	ENST00000399503	NM_005921.1	222	Gga/Tga																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38314889	38314889	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	89	297	0	ENST00000425967.3:c.175A>G	p.Thr59Ala	p.T59A	ENST00000425967	NM_001174067.1	59	Acc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0072993-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	24	477	3	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0073061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	106	242	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0073061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	165	354	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519947		P-0073061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	172	312	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																															
KLF5	688	MSKCC	GRCh37	13	73649905	73649905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	175	295	0	ENST00000377687.4:c.1255G>C	p.Glu419Gln	p.E419Q	ENST00000377687	NM_001730.3	419	Gag/Cag																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42840411	42840411	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	151	285	0	ENST00000398585.3:c.1337G>C	p.Arg446Thr	p.R446T	ENST00000398585	NM_001135099.1	446	aGa/aCa																																																																															
TERT	7015	MSKCC	GRCh37	5	1294084	1294084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	157	366	0	ENST00000310581.5:c.917G>T	p.Gly306Val	p.G306V	ENST00000310581	NM_198253.2	306	gGc/gTc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162194	47162194	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	132	343	0	ENST00000409792.3:c.3932del	p.Gly1311ValfsTer21	p.G1311Vfs*21	ENST00000409792	NM_014159.6	1311	gGt/gt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262538	16262538	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375130938		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			402	32	424	0	ENST00000375759.3:c.9803G>A	p.Arg3268His	p.R3268H	ENST00000375759	NM_015001.2	3268	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101612	27101612	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			727	68	578	2	ENST00000324856.7:c.4899del	p.Met1634Ter	p.M1634*	ENST00000324856	NM_006015.4	1632	Ccc/cc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			400	76	371	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
RET	5979	MSKCC	GRCh37	10	43622120	43622120	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			502	80	494	0	ENST00000355710.3:c.3142del	p.Leu1048SerfsTer61	p.L1048Sfs*61	ENST00000355710	NM_020975.4	1046	gCc/gc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			611	63	499	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																																																															
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			518	32	323	0	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307393	118307394	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	24	250	0	ENST00000534358.1:c.173dup	p.Ala59GlyfsTer88	p.A59Gfs*88	ENST00000534358	NM_005933.3	56	tcc/tCcc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			430	79	414	5	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
WT1	7490	MSKCC	GRCh37	11	32456560	32456560	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886048229		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			299	67	358	0	ENST00000332351.3:c.332C>T	p.Pro111Leu	p.P111L	ENST00000332351	NM_024426.4	111	cCg/cTg																																																																															
WT1	7490	MSKCC	GRCh37	11	32456678	32456678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			379	74	438	0	ENST00000332351.3:c.214G>A	p.Asp72Asn	p.D72N	ENST00000332351	NM_024426.4	72	Gac/Aac																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			600	32	619	0	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			473	179	494	7	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431879	49431879	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1233005055		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			572	90	617	0	ENST00000301067.7:c.9260G>A	p.Arg3087Gln	p.R3087Q	ENST00000301067	NM_003482.3	3087	cGg/cAg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495745	56495746	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs762900471		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	75	451	0	ENST00000267101.3:c.3937_3938del	p.Leu1313ThrfsTer2	p.L1313Tfs*2	ENST00000267101	NM_001982.3	1312	aCT/a																																																																															
LATS2	26524	MSKCC	GRCh37	13	21553861	21553861	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			391	59	344	0	ENST00000382592.4:c.2741del	p.Leu914TrpfsTer10	p.L914Wfs*10	ENST00000382592	NM_014572.2	914	tTg/tg																																																																															
AKT1	207	MSKCC	GRCh37	14	105236701	105236703	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs1412281689		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			539	67	423	0	ENST00000349310.3:c.1418_1420del	p.Ser473del	p.S473del	ENST00000349310	NM_001014432.1	473	tCCTac/tac																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609513	81609513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			579	44	567	3	ENST00000298171.2:c.1115del	p.Asn372ThrfsTer40	p.N372Tfs*40	ENST00000298171	NM_000369.2	371	Aaa/aa																																																																															
MGA	23269	MSKCC	GRCh37	15	42005391	42005391	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			560	78	547	0	ENST00000219905.7:c.3127C>T	p.Arg1043Ter	p.R1043*	ENST00000219905	NM_001164273.1	1043	Cga/Tga																																																																															
CD276	80381	MSKCC	GRCh37	15	73994778	73994778	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11574476		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			537	59	568	0	ENST00000318443.5:c.262G>A	p.Ala88Thr	p.A88T	ENST00000318443	NM_001024736.1	88	Gcc/Acc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88428966	88428966	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			310	20	265	0	ENST00000360948.2:c.2134C>T	p.Leu712Phe	p.L712F	ENST00000360948	NM_001012338.2	712	Ctc/Ttc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136759	2136759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			638	72	575	0	ENST00000219476.3:c.4876C>T	p.Pro1626Ser	p.P1626S	ENST00000219476	NM_000548.3	1626	Ccc/Tcc																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33680060	33680060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202123744		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			330	32	299	1	ENST00000308377.4:c.2021G>A	p.Arg674His	p.R674H	ENST00000308377	NM_152270.3	674	cGt/cAt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			593	52	534	3	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			423	248	656	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438145	56438145	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	77	392	0	ENST00000407977.2:c.848A>C	p.Gln283Pro	p.Q283P	ENST00000407977		283	cAg/cCg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			694	72	537	0	ENST00000407977.2:c.349del	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			574	95	579	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
YES1	7525	MSKCC	GRCh37	18	745962	745963	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			434	73	417	0	ENST00000314574.4:c.559_560del	p.Ser187Ter	p.S187*	ENST00000314574	NM_005433.3	187	AGt/t																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10248546	10248546	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374047326		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			495	61	472	0	ENST00000340748.4:c.4207G>A	p.Ala1403Thr	p.A1403T	ENST00000340748		1403	Gca/Aca																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10270726	10270726	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			532	98	541	1	ENST00000340748.4:c.1009del	p.Met337TrpfsTer8	p.M337Wfs*8	ENST00000340748		337	Atg/tg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272336	15272337	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs771517374		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			559	74	591	2	ENST00000263388.2:c.6102dup	p.Gly2035ArgfsTer60	p.G2035Rfs*60	ENST00000263388	NM_000435.2	2034	-/C																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19261516	19261516	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767519545		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			454	51	354	0	ENST00000162023.5:c.29G>A	p.Arg10His	p.R10H	ENST00000162023		10	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214894	36214894	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			509	62	465	3	ENST00000222270.7:c.3325del	p.Arg1109GlufsTer73	p.R1109Efs*73	ENST00000222270	NM_014727.1	1107	aCc/ac																																																																															
CD79A	973	MSKCC	GRCh37	19	42384773	42384773	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782714583		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	63	331	0	ENST00000221972.3:c.535G>A	p.Gly179Arg	p.G179R	ENST00000221972	NM_021601.3	179	Ggg/Agg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424760	47424760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			654	114	563	4	ENST00000404338.3:c.2834del	p.Lys945ArgfsTer3	p.K945Rfs*3	ENST00000404338	NM_004491.4	943	gAa/ga																																																																															
CASP8	841	MSKCC	GRCh37	2	202131495	202131495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			637	49	513	0	ENST00000358485.4:c.463G>A	p.Ala155Thr	p.A155T	ENST00000358485	NM_001080125.1	155	Gct/Act																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			568	55	494	0	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213243	39213243	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			607	52	583	2	ENST00000402219.2:c.3724del	p.Ser1242ValfsTer37	p.S1242Vfs*37	ENST00000402219	NM_005633.3	1242	Agt/gt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61712998	61712998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			541	32	463	0	ENST00000401558.2:c.2413G>A	p.Ala805Thr	p.A805T	ENST00000401558	NM_003400.3	805	Gcc/Acc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279820	29279820	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1175167433		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			129	12	76	0	ENST00000544604.2:c.70del	p.Arg24AlafsTer98	p.R24Afs*98	ENST00000544604	NM_001206998.1	22	cgC/cg																																																																															
ATR	545	MSKCC	GRCh37	3	142272236	142272236	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367864862		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	22	299	0	ENST00000350721.4:c.2638G>A	p.Ala880Thr	p.A880T	ENST00000350721	NM_001184.3	880	Gca/Aca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			291	37	260	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MLH1	4292	MSKCC	GRCh37	3	37081709	37081709	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764663152		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			527	34	403	0	ENST00000231790.2:c.1591G>A	p.Val531Met	p.V531M	ENST00000231790	NM_000249.3	531	Gtg/Atg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103755	47103756	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			597	99	468	2	ENST00000409792.3:c.6190_6191del	p.Asp2064ProfsTer8	p.D2064Pfs*8	ENST00000409792	NM_014159.6	2064	GAc/c																																																																															
SETD2	29072	MSKCC	GRCh37	3	47143010	47143010	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs759274882		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			400	49	292	0	ENST00000409792.3:c.4953del	p.Phe1651LeufsTer12	p.F1651Lfs*12	ENST00000409792	NM_014159.6	1651	ttT/tt																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			688	78	554	6	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806150	1806150	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			494	95	517	0	ENST00000260795.2:c.1169T>C	p.Val390Ala	p.V390A	ENST00000260795		390	gTg/gCg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806180	1806181	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775260779		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			542	64	563	1	ENST00000260795.2:c.1206dup	p.Lys403GlnfsTer93	p.K403Qfs*93	ENST00000260795		400	agc/agCc																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			602	87	581	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048748	180048748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			488	79	522	0	ENST00000261937.6:c.1814C>T	p.Pro605Leu	p.P605L	ENST00000261937	NM_182925.4	605	cCg/cTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67593403	67593403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			501	98	422	0	ENST00000274335.5:c.2149C>T	p.Pro717Ser	p.P717S	ENST00000274335		717	Cca/Tca																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			409	192	410	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
FYN	2534	MSKCC	GRCh37	6	112017578	112017578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			533	97	403	0	ENST00000368678.4:c.935C>T	p.Ala312Val	p.A312V	ENST00000368678		312	gCg/gTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405953	157405954	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			611	85	598	1	ENST00000346085.5:c.2201dup	p.Ser736IlefsTer27	p.S736Ifs*27	ENST00000346085	NM_020732.3	732	ccg/ccGg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			390	115	408	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845321	151845321	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1327155514		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			508	45	551	1	ENST00000262189.6:c.13691A>G	p.Gln4564Arg	p.Q4564R	ENST00000262189	NM_170606.2	4564	cAg/cGg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468080	50468080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			546	93	518	0	ENST00000331340.3:c.1315C>T	p.Arg439Cys	p.R439C	ENST00000331340	NM_006060.4	439	Cgc/Tgc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740376	145740376	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35407712		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			516	80	472	0	ENST00000428558.2:c.1564C>T	p.Arg522Cys	p.R522C	ENST00000428558	NM_004260.3	522	Cgc/Tgc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372308	55372308	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs947668235		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			573	99	600	0	ENST00000297316.4:c.998C>T	p.Pro333Leu	p.P333L	ENST00000297316	NM_022454.3	333	cCg/cTg																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			439	67	406	2	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
MTAP	4507	MSKCC	GRCh37	9	21854745	21854745	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			566	50	483	1	ENST00000380172.4:c.571del	p.Ala191ArgfsTer6	p.A191Rfs*6	ENST00000380172	NM_002451.3	189	tGg/tg																																																																															
TEK	7010	MSKCC	GRCh37	9	27213538	27213538	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			482	42	437	0	ENST00000380036.4:c.2938del	p.Ile980Ter	p.I980*	ENST00000380036	NM_000459.3	978	gcA/gc																																																																															
FANCC	2176	MSKCC	GRCh37	9	98003011	98003011	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			414	63	312	0	ENST00000289081.3:c.265del	p.Ile89PhefsTer2	p.I89Ffs*2	ENST00000289081	NM_000136.2	89	Att/tt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270592	98270592	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1199437529		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			299	58	306	0	ENST00000331920.6:c.52A>G	p.Ser18Gly	p.S18G	ENST00000331920	NM_000264.3	18	Agc/Ggc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			657	64	694	0	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650858	48650858	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782632688		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			492	101	568	0	ENST00000376670.3:c.727C>T	p.Arg243Trp	p.R243W	ENST00000376670	NM_002049.3	243	Cgg/Tgg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223533	53223533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			465	63	534	0	ENST00000375401.3:c.3826G>A	p.Glu1276Lys	p.E1276K	ENST00000375401	NM_004187.3	1276	Gag/Aag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			410	52	457	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468116	120468116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			608	122	602	0	ENST00000256646.2:c.4323G>T	p.Glu1441Asp	p.E1441D	ENST00000256646	NM_024408.3	1441	gaG/gaT																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230561655	230561655	+	upstream_gene_variant	5'Flank	DEL	C	C	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			271	71	289	0				ENST00000391860	NM_001258311.1																																																																																	
RAD54L	8438	MSKCC	GRCh37	1	46724397	46724397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			468	90	465	0	ENST00000371975.4:c.250G>A	p.Val84Ile	p.V84I	ENST00000371975	NM_003579.3	84	Gtc/Atc																																																																															
ATM	472	MSKCC	GRCh37	11	108205781	108205782	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			461	28	379	0	ENST00000278616.4:c.8101dup	p.Ile2701AsnfsTer17	p.I2701Nfs*17	ENST00000278616	NM_000051.3	2699	cca/ccAa																																																																															
HRAS	3265	MSKCC	GRCh37	11	534286	534286	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894228		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			465	76	480	1	ENST00000311189.7:c.37G>A	p.Gly13Ser	p.G13S	ENST00000311189		13	Ggt/Agt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573118	64573118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs886039417		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			563	69	427	0	ENST00000337652.1:c.1189del	p.Glu397SerfsTer53	p.E397Sfs*53	ENST00000337652	NM_130803.2	397	Gag/ag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246025	46246026	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			540	40	572	0	ENST00000334344.6:c.4124dup	p.Asn1375LysfsTer6	p.N1375Kfs*6	ENST00000334344	NM_152641.2	1373	-/A																																																																															
USP8	9101	MSKCC	GRCh37	15	50788160	50788160	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			454	35	290	0	ENST00000307179.4:c.2778del	p.Gln927ArgfsTer30	p.Q927Rfs*30	ENST00000307179		925	cTt/ct																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14015951	14015951	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			485	46	414	0	ENST00000311895.7:c.271G>T	p.Glu91Ter	p.E91*	ENST00000311895	NM_005236.2	91	Gaa/Taa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67655437	67655437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			556	44	495	0	ENST00000264010.4:c.1300G>A	p.Val434Met	p.V434M	ENST00000264010	NM_006565.3	434	Gtg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827803	72827804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			491	77	485	0	ENST00000268489.5:c.8777dup	p.Ser2927GlufsTer13	p.S2927Efs*13	ENST00000268489	NM_006885.3	2926	ccg/ccCg																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66521915	66521915	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			448	76	374	0	ENST00000358598.2:c.570G>A	p.Trp190Ter	p.W190*	ENST00000358598	NM_212471.2	190	tgG/tgA																																																																															
MALT1	10892	MSKCC	GRCh37	18	56414803	56414803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			526	45	501	0	ENST00000348428.3:c.2204G>A	p.Gly735Asp	p.G735D	ENST00000348428	NM_006785.3	735	gGt/gAt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17951047	17951047	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			440	59	348	0	ENST00000458235.1:c.1246T>G	p.Cys416Gly	p.C416G	ENST00000458235	NM_000215.3	416	Tgt/Ggt																																																																															
CIC	23152	MSKCC	GRCh37	19	42798175	42798175	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			529	100	608	0	ENST00000575354.2:c.4129C>T	p.Gln1377Ter	p.Q1377*	ENST00000575354	NM_015125.3	1377	Cag/Tag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229328	5229328	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			471	82	494	0	ENST00000357368.4:c.2375A>G	p.Tyr792Cys	p.Y792C	ENST00000357368	NM_002850.3	792	tAt/tGt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5246041	5246041	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			501	62	433	0	ENST00000357368.4:c.734del	p.Pro245ArgfsTer8	p.P245Rfs*8	ENST00000357368	NM_002850.3	245	cCg/cg																																																																															
INSR	3643	MSKCC	GRCh37	19	7141803	7141803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			508	42	373	0	ENST00000302850.5:c.2567C>A	p.Pro856His	p.P856H	ENST00000302850	NM_000208.2	856	cCt/cAt																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873049	136873049	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			724	101	566	0	ENST00000241393.3:c.449T>C	p.Leu150Pro	p.L150P	ENST00000241393	NM_003467.2	150	cTg/cCg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082664	16082664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			214	33	223	0	ENST00000281043.3:c.478C>T	p.Arg160Cys	p.R160C	ENST00000281043	NM_005378.4	160	Cgc/Tgc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085744	16085744	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778923558		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			474	95	431	0	ENST00000281043.3:c.920C>T	p.Ala307Val	p.A307V	ENST00000281043	NM_005378.4	307	gCc/gTc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212568838	212568838	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	56	403	0	ENST00000342788.4:c.1280T>C	p.Val427Ala	p.V427A	ENST00000342788	NM_005235.2	427	gTa/gCa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101059	41101059	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			476	52	502	0	ENST00000373198.4:c.1297C>A	p.Gln433Lys	p.Q433K	ENST00000373198	NM_133170.3	433	Cag/Aag																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29438535	29438535	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	46	374	0	ENST00000544604.2:c.482del	p.Asn161ThrfsTer8	p.N161Tfs*8	ENST00000544604	NM_001206998.1	160	gAa/ga																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445796	29445796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			409	54	444	0	ENST00000544604.2:c.1627C>A	p.Leu543Met	p.L543M	ENST00000544604	NM_001206998.1	543	Ctg/Atg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446170	29446170	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			436	79	505	0	ENST00000544604.2:c.2001C>G	p.Tyr667Ter	p.Y667*	ENST00000544604	NM_001206998.1	667	taC/taG																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446545	29446546	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			483	56	423	1	ENST00000544604.2:c.2381dup	p.Ser795GlnfsTer6	p.S795Qfs*6	ENST00000544604	NM_001206998.1	792	-/G																																																																															
NF2	4771	MSKCC	GRCh37	22	30069349	30069349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			555	76	590	0	ENST00000338641.4:c.1214C>T	p.Ala405Val	p.A405V	ENST00000338641	NM_000268.3	405	gCt/gTt																																																																															
EP300	2033	MSKCC	GRCh37	22	41533677	41533677	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1441399138		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			515	48	446	0	ENST00000263253.7:c.1643C>T	p.Ala548Val	p.A548V	ENST00000263253	NM_001429.3	548	gCc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917508	178917508	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			432	30	385	0	ENST00000263967.3:c.383T>A	p.Phe128Tyr	p.F128Y	ENST00000263967	NM_006218.2	128	tTt/tAt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37055949	37055949	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			375	33	309	0	ENST00000231790.2:c.704del	p.Asp235ValfsTer4	p.D235Vfs*4	ENST00000231790	NM_000249.3	235	gAt/gt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49935530	49935530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			507	85	501	0	ENST00000296474.3:c.1834G>T	p.Gly612Cys	p.G612C	ENST00000296474	NM_002447.2	612	Ggc/Tgc																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158629	26158629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			255	31	214	0	ENST00000289316.2:c.232G>A	p.Ala78Thr	p.A78T	ENST00000289316	NM_138720.2	78	Gct/Act																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671547	30671547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			632	67	531	0	ENST00000376406.3:c.5413C>T	p.Pro1805Ser	p.P1805S	ENST00000376406	NM_014641.2	1805	Cct/Tct																																																																															
MET	4233	MSKCC	GRCh37	7	116339222	116339222	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			544	62	430	0	ENST00000397752.3:c.84G>T	p.Glu28Asp	p.E28D	ENST00000397752	NM_000245.2	28	gaG/gaT																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317549	1317549	+	downstream_gene_variant	3'Flank	SNP	T	T	C			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	36	275	0				ENST00000381566																																																																																		
PHF6	84295	MSKCC	GRCh37	X	133549074	133549074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			421	29	373	0	ENST00000332070.3:c.758C>T	p.Thr253Ile	p.T253I	ENST00000332070	NM_032458.2	253	aCa/aTa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040977	47040977	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782445201		P-0073086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			529	65	549	0	ENST00000329236.7:c.1273G>A	p.Ala425Thr	p.A425T	ENST00000329236	NM_001204466.1	425	Gct/Act																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			274	55	344	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			456	29	503	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			195	182	400	0	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419930	41419930	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			349	21	535	4	ENST00000373198.4:c.391del	p.Gln131LysfsTer17	p.Q131Kfs*17	ENST00000373198	NM_133170.3	131	Caa/aa																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			170	190	461	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175857	24175859	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			311	10	427	0	ENST00000263121.7:c.1091_1093del	p.Lys364del	p.K364del	ENST00000263121	NM_003073.3	362	gAGAag/gag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46240657	46240657	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757456378		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			119	55	328	0	ENST00000334344.6:c.1517C>T	p.Ala506Val	p.A506V	ENST00000334344	NM_152641.2	506	gCg/gTg																																																																															
RB1	5925	MSKCC	GRCh37	13	48942685	48942685	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913301		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			164	55	252	0	ENST00000267163.4:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000267163	NM_000321.2	358	Cga/Tga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			313	109	486	14	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	97	481	8	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			272	64	454	3	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
POLE	5426	MSKCC	GRCh37	12	133214643	133214643	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767012802		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			367	60	411	0	ENST00000320574.5:c.5635C>T	p.Arg1879Cys	p.R1879C	ENST00000320574	NM_006231.2	1879	Cgt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261245	16261246	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			329	118	513	0	ENST00000375759.3:c.8516dup	p.Ala2840GlyfsTer7	p.A2840Gfs*7	ENST00000375759	NM_015001.2	2837	atc/atCc																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			215	60	484	3	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
CASP8	841	MSKCC	GRCh37	2	202149799	202149799	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	81	524	0	ENST00000358485.4:c.1245del	p.Phe415LeufsTer26	p.F415Lfs*26	ENST00000358485	NM_001080125.1	414	Ttt/tt																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006026	22006026	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1256288325		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			285	164	558	0	ENST00000276925.6:c.377G>A	p.Arg126His	p.R126H	ENST00000276925	NM_004936.3	126	cGc/cAc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88676945	88676945	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs759363072		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			79	27	113	0	ENST00000372037.3:c.730C>T	p.Arg244Ter	p.R244*	ENST00000372037	NM_004329.2	244	Cga/Tga																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14026116	14026116	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			195	68	352	0	ENST00000311895.7:c.1081del	p.Met361TrpfsTer15	p.M361Wfs*15	ENST00000311895	NM_005236.2	359	gAa/ga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440643	56440643	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			302	145	478	2	ENST00000407977.2:c.575del	p.Pro192ArgfsTer11	p.P192Rfs*11	ENST00000407977		192	cCg/cg																																																																															
APC	324	MSKCC	GRCh37	5	112164664	112164664	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	59	335	0	ENST00000257430.4:c.1742del	p.Lys581ArgfsTer9	p.K581Rfs*9	ENST00000257430	NM_000038.5	580	Aaa/aa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89818580	89818580	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200022826		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	32	449	2	ENST00000389301.3:c.3032G>A	p.Arg1011His	p.R1011H	ENST00000389301	NM_000135.2	1011	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210796	5210796	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758652323		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			281	111	475	0	ENST00000357368.4:c.5255C>T	p.Ala1752Val	p.A1752V	ENST00000357368	NM_002850.3	1752	gCg/gTg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518014	176518014	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1326935512		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			329	125	513	1	ENST00000292408.4:c.512G>A	p.Arg171His	p.R171H	ENST00000292408	NM_213647.1	171	cGc/cAc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029554	14029554	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147105770		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			246	76	385	0	ENST00000311895.7:c.1765C>T	p.Arg589Trp	p.R589W	ENST00000311895	NM_005236.2	589	Cgg/Tgg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			203	48	353	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
SMO	6608	MSKCC	GRCh37	7	128829075	128829075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1247591045		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	59	374	0	ENST00000249373.3:c.88del	p.Ala30ArgfsTer25	p.A30Rfs*25	ENST00000249373	NM_005631.4	28	cGg/cg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039405	47039405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			89	75	258	0	ENST00000329236.7:c.797G>A	p.Arg266His	p.R266H	ENST00000329236	NM_001204466.1	266	cGc/cAc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24133968	24133968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			384	23	451	0	ENST00000263121.7:c.119G>A	p.Arg40Gln	p.R40Q	ENST00000263121	NM_003073.3	40	cGa/cAa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468398	89468398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			207	74	344	0	ENST00000336596.2:c.1938del	p.Glu647ArgfsTer9	p.E647Rfs*9	ENST00000336596	NM_005233.5	644	tcA/tc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18960950	18960950	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			298	107	401	0	ENST00000262803.5:c.532del	p.Glu178ArgfsTer55	p.E178Rfs*55	ENST00000262803	NM_002911.3	176	ctG/ct																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936081	71936081	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			105	102	363	0	ENST00000298229.2:c.57del	p.Ser20ProfsTer7	p.S20Pfs*7	ENST00000298229	NM_001567.3	18	gCc/gc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27022998	27022999	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			203	40	411	1	ENST00000324856.7:c.110dup	p.Glu38ArgfsTer73	p.E38Rfs*73	ENST00000324856	NM_006015.4	35	gcg/gcGg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86628335	86628335	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			144	57	314	0	ENST00000274376.6:c.704T>C	p.Met235Thr	p.M235T	ENST00000274376	NM_002890.2	235	aTg/aCg																																																																															
WT1	7490	MSKCC	GRCh37	11	32456390	32456390	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			234	106	455	0	ENST00000332351.3:c.502T>C	p.Phe168Leu	p.F168L	ENST00000332351	NM_024426.4	168	Ttc/Ctc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258604	16258604	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1195174281		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			346	145	558	0	ENST00000375759.3:c.5869C>T	p.Arg1957Cys	p.R1957C	ENST00000375759	NM_015001.2	1957	Cgc/Tgc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728602	190728602	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			241	76	412	0	ENST00000441310.2:c.1990C>T	p.Gln664Ter	p.Q664*	ENST00000441310	NM_000534.4	664	Cag/Tag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93964370	93964370	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			156	44	317	0	ENST00000369303.4:c.2527C>A	p.Gln843Lys	p.Q843K	ENST00000369303	NM_004440.3	843	Caa/Aaa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198265558	198265558	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			203	56	367	0	ENST00000335508.6:c.2599del	p.Met867TrpfsTer2	p.M867Wfs*2	ENST00000335508	NM_012433.2	867	Atg/tg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244269	5244269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			301	107	492	0	ENST00000357368.4:c.1213G>A	p.Val405Ile	p.V405I	ENST00000357368	NM_002850.3	405	Gtc/Atc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605158	46605158	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1457723486		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			235	83	416	0	ENST00000263734.3:c.1375G>A	p.Val459Met	p.V459M	ENST00000263734	NM_001430.4	459	Gtg/Atg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779776	3779776	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1376667989		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			305	70	537	0	ENST00000262367.5:c.5272G>A	p.Glu1758Lys	p.E1758K	ENST00000262367	NM_004380.2	1758	Gag/Aag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332463	153332463	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			175	80	342	0	ENST00000281708.4:c.493del	p.Thr165GlnfsTer4	p.T165Qfs*4	ENST00000281708	NM_033632.3	165	Aca/ca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822008	72822009	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC	rs745803083		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			320	73	487	0	ENST00000268489.5:c.10164_10166dup	p.Gln3389dup	p.Q3389dup	ENST00000268489	NM_006885.3	3389	caa/caGCAa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			256	90	420	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986677	36986677	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			180	34	398	0	ENST00000354822.5:c.1012A>G	p.Ser338Gly	p.S338G	ENST00000354822	NM_001079668.2	338	Agc/Ggc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120529707	120529707	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			274	101	418	0	ENST00000256646.2:c.752-2A>G		p.X251_splice	ENST00000256646	NM_024408.3	251																																																																																
RXRA	6256	MSKCC	GRCh37	9	137300941	137300941	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	52	482	0	ENST00000481739.1:c.586C>A	p.Leu196Met	p.L196M	ENST00000481739	NM_002957.4	196	Ctg/Atg																																																																															
CIC	23152	MSKCC	GRCh37	19	42794043	42794043	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	120	434	0	ENST00000575354.2:c.1404G>T	p.Lys468Asn	p.K468N	ENST00000575354	NM_015125.3	468	aaG/aaT																																																																															
REL	5966	MSKCC	GRCh37	2	61149377	61149377	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			186	94	420	0	ENST00000295025.8:c.1567T>C	p.Ser523Pro	p.S523P	ENST00000295025	NM_002908.2	523	Tca/Cca																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88635776	88635776	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs786203157		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			108	28	241	0	ENST00000372037.3:c.1A>G	p.Met1?	p.M1?	ENST00000372037	NM_004329.2	1	Atg/Gtg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436170	56436170	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			234	96	406	0	ENST00000407977.2:c.967del	p.Ser323ProfsTer96	p.S323Pfs*96	ENST00000407977		323	Tcc/cc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870860	12870861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	91	461	0	ENST00000228872.4:c.88_89dup	p.Asn31GlyfsTer12	p.N31Gfs*12	ENST00000228872	NM_004064.3	29	-/AG																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288625	15288625	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			113	49	303	0	ENST00000263388.2:c.4114T>C	p.Cys1372Arg	p.C1372R	ENST00000263388	NM_000435.2	1372	Tgc/Cgc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11186823	11186823	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	90	388	0	ENST00000361445.4:c.6382C>G	p.Pro2128Ala	p.P2128A	ENST00000361445	NM_004958.3	2128	Cca/Gca																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564642	139564642	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			199	83	414	0	ENST00000308874.7:c.431G>T	p.Arg144Met	p.R144M	ENST00000308874		144	aGg/aTg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022889	12022889	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs760424615		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	155	600	0	ENST00000396373.4:c.995T>C	p.Ile332Thr	p.I332T	ENST00000396373	NM_001987.4	332	aTt/aCt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827384	72827384	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			384	29	440	0	ENST00000268489.5:c.9197A>C	p.Tyr3066Ser	p.Y3066S	ENST00000268489	NM_006885.3	3066	tAc/tCc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56434931	56434931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			306	121	573	1	ENST00000407977.2:c.2206G>A	p.Glu736Lys	p.E736K	ENST00000407977		736	Gaa/Aaa																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983223	149983224	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			243	75	383	0	ENST00000253339.5:c.3034dup	p.Thr1012AsnfsTer3	p.T1012Nfs*3	ENST00000253339		1012	aca/aAca																																																																															
RASA1	5921	MSKCC	GRCh37	5	86682695	86682695	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			153	68	325	0	ENST00000274376.6:c.2900T>C	p.Met967Thr	p.M967T	ENST00000274376	NM_002890.2	967	aTg/aCg																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690086	33690086	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			241	86	463	0	ENST00000308377.4:c.741del	p.Phe247LeufsTer24	p.F247Lfs*24	ENST00000308377	NM_152270.3	247	ttT/tt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417578	139417578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			256	98	504	0	ENST00000277541.6:c.466C>A	p.Leu156Met	p.L156M	ENST00000277541	NM_017617.3	156	Ctg/Atg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15978872	15978872	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			221	37	388	0	ENST00000268712.3:c.3646del	p.Ser1216ValfsTer28	p.S1216Vfs*28	ENST00000268712	NM_006311.3	1216	Agt/gt																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24159071	24159071	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1444281296		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			281	139	453	0	ENST00000263121.7:c.743A>G	p.Tyr248Cys	p.Y248C	ENST00000263121	NM_003073.3	248	tAc/tGc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435729	110435729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			225	88	443	0	ENST00000375856.3:c.2672C>T	p.Thr891Met	p.T891M	ENST00000375856	NM_003749.2	891	aCg/aTg																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99802254	99802254	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			84	36	137	0	ENST00000280892.6:c.639A>G	p.Ile213Met	p.I213M	ENST00000280892	NM_001130678.1	213	atA/atG																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62325821	62325821	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs756579704		P-0073089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			294	116	400	0	ENST00000482936.1:c.3089C>T	p.Ser1030Leu	p.S1030L	ENST00000482936		1030	tCg/tTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	71	570	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0073108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	305	494	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185181426	185181426	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1311413742		P-0073108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	91	414	0	ENST00000265026.3:c.1367G>A	p.Arg456Gln	p.R456Q	ENST00000265026	NM_004721.4	456	cGa/cAa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69058536	69058536	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61753703		P-0073108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	103	260	0	ENST00000288368.4:c.4180C>T	p.Arg1394Trp	p.R1394W	ENST00000288368	NM_024870.2	1394	Cgg/Tgg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332108	70332108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140156594		P-0073108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	167	370	0	ENST00000373644.4:c.13C>T	p.Arg5Cys	p.R5C	ENST00000373644	NM_030625.2	5	Cgc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509853	187509853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748762429		P-0073108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	42	597	0	ENST00000441802.2:c.13660G>A	p.Glu4554Lys	p.E4554K	ENST00000441802	NM_005245.3	4554	Gaa/Aaa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098551	11098551	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	277	685	0	ENST00000344626.4:c.1070del	p.Lys357SerfsTer54	p.K357Sfs*54	ENST00000344626	NM_003072.3	357	Aag/ag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65309854	65309854	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	233	551	0	ENST00000342505.4:c.2296G>C	p.Asp766His	p.D766H	ENST00000342505	NM_002227.2	766	Gac/Cac																																																																															
PREX2	80243	MSKCC	GRCh37	8	68934346	68934346	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	91	232	0	ENST00000288368.4:c.412A>G	p.Lys138Glu	p.K138E	ENST00000288368	NM_024870.2	138	Aaa/Gaa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162880	38162880	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0073108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	416	505	0	ENST00000317025.8:c.2326G>T	p.Glu776Ter	p.E776*	ENST00000317025	NM_023034.1	776	Gaa/Taa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749200	43749200	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	92	407	0	ENST00000382044.4:c.1606T>A	p.Leu536Met	p.L536M	ENST00000382044	NM_001141980.1	536	Ttg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0073120-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	595	481	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0073120-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	840	444	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0073120-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			45	44	573	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0073120-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			55	59	334	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1906004	1906004	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073120-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	24	435	0	ENST00000382895.3:c.659A>T	p.Tyr220Phe	p.Y220F	ENST00000382895	NM_133330.2	220	tAc/tTc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281307	49281307	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs772682084		P-0073120-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			29	69	459	0	ENST00000282018.3:c.354G>T	p.Leu118Phe	p.L118F	ENST00000282018	NM_020377.2	118	ttG/ttT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0073136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	141	353	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0073136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	219	322	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																															
ALK	238	MSKCC	GRCh37	2	29451784	29451784	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772809305		P-0073136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	49	178	1	ENST00000389048.3:c.2781del	p.Cys928AlafsTer11	p.C928Afs*11	ENST00000389048	NM_004304.4	927	ggG/gg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	160	412	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710564	114710564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	169	459	0	ENST00000543371.1:c.49G>A	p.Glu17Lys	p.E17K	ENST00000543371	NM_001198531.1	17	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952052	178952052	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	115	431	0	ENST00000263967.3:c.3107T>C	p.Leu1036Ser	p.L1036S	ENST00000263967	NM_006218.2	1036	tTg/tCg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426498	47426498	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372763934		P-0073136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	151	633	0	ENST00000377045.4:c.841C>T	p.Arg281Trp	p.R281W	ENST00000377045	NM_001654.4	281	Cgg/Tgg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120132	70120133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0073136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	130	510	0	ENST00000245479.2:c.1137_1138dup	p.His380ArgfsTer4	p.H380Rfs*4	ENST00000245479	NM_000346.3	378	-/GC																																																																															
POT1	25913	MSKCC	GRCh37	7	124511035	124511035	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	117	285	0	ENST00000357628.3:c.185T>G	p.Phe62Cys	p.F62C	ENST00000357628	NM_015450.2	62	tTt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0073136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	94	268	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141549472	141549472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1285375898		P-0073136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	133	434	2	ENST00000220592.5:c.2116G>A	p.Val706Met	p.V706M	ENST00000220592	NM_012154.3	706	Gtg/Atg																																																																															
INSR	3643	MSKCC	GRCh37	19	7143057	7143057	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773661946		P-0073136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	114	451	0	ENST00000302850.5:c.2312C>T	p.Thr771Met	p.T771M	ENST00000302850	NM_000208.2	771	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0073170-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	104	579	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371645	55371645	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1420347279		P-0073170-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	58	581	0	ENST00000297316.4:c.335C>T	p.Ala112Val	p.A112V	ENST00000297316	NM_022454.3	112	gCg/gTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1272317	1272317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073170-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	55	597	0	ENST00000310581.5:c.2365G>A	p.Ala789Thr	p.A789T	ENST00000310581	NM_198253.2	789	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112175133	112175133	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0073170-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	68	395	0	ENST00000257430.4:c.3842C>G	p.Ser1281Ter	p.S1281*	ENST00000257430	NM_000038.5	1281	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0073184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	165	668	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119769	70119769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	142	412	0	ENST00000245479.2:c.774del	p.Leu259CysfsTer20	p.L259Cfs*20	ENST00000245479	NM_000346.3	257	cgC/cg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56865899	56865899	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779103749		P-0073184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	136	480	0	ENST00000308159.5:c.1231G>A	p.Glu411Lys	p.E411K	ENST00000308159	NM_014669.4	411	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0073184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	117	390	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
ERF	2077	MSKCC	GRCh37	19	42753698	42753698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	71	664	0	ENST00000222329.4:c.566G>A	p.Cys189Tyr	p.C189Y	ENST00000222329	NM_006494.2	189	tGt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112175218	112175221	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0073184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	69	519	0	ENST00000257430.4:c.3928_3931del	p.Lys1310LeufsTer10	p.K1310Lfs*10	ENST00000257430	NM_000038.5	1309	gaAAAG/ga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976721	2976721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	138	541	0	ENST00000396946.4:c.1291C>A	p.Leu431Met	p.L431M	ENST00000396946	NM_032415.4	431	Ctg/Atg																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805590	46805590	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs8556		P-0073184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	165	566	0	ENST00000290295.7:c.366C>A	p.Ser122Arg	p.S122R	ENST00000290295	NM_006361.5	122	agC/agA																																																																															
HGF	3082	MSKCC	GRCh37	7	81392102	81392102	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	29	405	0	ENST00000222390.5:c.175A>G	p.Ile59Val	p.I59V	ENST00000222390	NM_000601.4	59	Ata/Gta																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0073188-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			39	67	511	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
CD79B	974	MSKCC	GRCh37	17	62007443	62007443	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0073188-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	53	624	0	ENST00000392795.3:c.424C>T	p.Arg142Ter	p.R142*	ENST00000392795	NM_001039933.1	142	Cga/Tga																																																																															
RET	5979	MSKCC	GRCh37	10	43609963	43609963	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777122776		P-0073188-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	46	785	0	ENST00000355710.3:c.1915G>A	p.Ala639Thr	p.A639T	ENST00000355710	NM_020975.4	639	Gca/Aca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0073194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	8	322	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0073194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	212	439	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0073194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	271	537	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0073194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	136	247	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0073194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	292	611	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89712017	89712017	+	splice_donor_variant	Splice_Site	SNP	G	G	C	rs1114167622		P-0073194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	136	231	0	ENST00000371953.3:c.634+1G>C		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																																
DNMT3A	1788	MSKCC	GRCh37	2	25469113	25469113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745406398		P-0073194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	221	518	0	ENST00000264709.3:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000264709	NM_175629.2	449	Gca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0073194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	182	371	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
APC	324	MSKCC	GRCh37	5	112154921	112154922	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-	rs387906238		P-0073194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	183	442	0	ENST00000257430.4:c.1192_1193del	p.Lys398GlufsTer5	p.K398Efs*5	ENST00000257430	NM_000038.5	398	AAg/g																																																																															
MTOR	2475	MSKCC	GRCh37	1	11298064	11298064	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747836080		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			737	153	448	0	ENST00000361445.4:c.2044C>T	p.Arg682Cys	p.R682C	ENST00000361445	NM_004958.3	682	Cgc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255331	16255331	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	53	468	0	ENST00000375759.3:c.2596G>T	p.Gly866Ter	p.G866*	ENST00000375759	NM_015001.2	866	Gga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260214	16260214	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	125	601	0	ENST00000375759.3:c.7484del	p.Pro2495LeufsTer4	p.P2495Lfs*4	ENST00000375759	NM_015001.2	2493	agC/ag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023442	27023442	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771692088		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	69	393	0	ENST00000324856.7:c.548C>T	p.Ala183Val	p.A183V	ENST00000324856	NM_006015.4	183	gCg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	170	490	2	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs769210858		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	92	411	0	ENST00000361632.4:c.1404del	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551396	150551396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			741	46	502	0	ENST00000369026.2:c.611C>T	p.Ala204Val	p.A204V	ENST00000369026	NM_021960.4	204	gCc/gTc																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150921872	150921872	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	77	411	0	ENST00000271640.5:c.1451G>T	p.Arg484Leu	p.R484L	ENST00000271640	NM_001145415.1	484	cGg/cTg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150933382	150933382	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1220025296		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	121	426	0	ENST00000271640.5:c.2849del	p.Pro950GlnfsTer16	p.P950Qfs*16	ENST00000271640	NM_001145415.1	948	caC/ca																																																																															
CDC73	79577	MSKCC	GRCh37	1	193181525	193181525	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs771907995		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	19	216	0	ENST00000367435.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000367435	NM_024529.4	358	Cga/Tga																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612992	228612992	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1410959088		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	122	660	0	ENST00000366696.1:c.35C>T	p.Thr12Met	p.T12M	ENST00000366696	NM_003493.2	12	aCg/aTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70426847	70426847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	63	330	0	ENST00000373644.4:c.4507C>T	p.Arg1503Trp	p.R1503W	ENST00000373644	NM_030625.2	1503	Cgg/Tgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903763	114903763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	107	350	0	ENST00000543371.1:c.767C>T	p.Pro256Leu	p.P256L	ENST00000543371	NM_001198531.1	256	cCg/cTg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741447	17741447	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	46	382	0	ENST00000250003.3:c.118C>A	p.Leu40Met	p.L40M	ENST00000250003	NM_002478.4	40	Ctg/Atg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948713	71948713	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779810240		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	119	523	0	ENST00000298229.2:c.3425G>A	p.Arg1142His	p.R1142H	ENST00000298229	NM_001567.3	1142	cGc/cAc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	43	197	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																															
PGR	5241	MSKCC	GRCh37	11	100909877	100909877	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	17	248	0	ENST00000325455.5:c.2772G>T	p.Met924Ile	p.M924I	ENST00000325455	NM_001202474.3	924	atG/atT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	47	247	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432251	49432251	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			811	50	525	0	ENST00000301067.7:c.8888T>G	p.Leu2963Arg	p.L2963R	ENST00000301067	NM_003482.3	2963	cTg/cGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	99	562	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233089	69233090	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs746910913		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	55	363	0	ENST00000462284.1:c.961dup	p.Leu321ProfsTer13	p.L321Pfs*13	ENST00000462284	NM_002392.5	318	-/C																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112891121	112891121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507521		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	114	401	0	ENST00000351677.2:c.455G>A	p.Arg152His	p.R152H	ENST00000351677	NM_002834.3	152	cGc/cAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112461	115112461	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777764537		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	101	432	0	ENST00000257566.3:c.1279C>T	p.Arg427Trp	p.R427W	ENST00000257566	NM_016569.3	427	Cgg/Tgg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549209	21549209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			754	149	501	0	ENST00000382592.4:c.3067del	p.Asp1023ThrfsTer49	p.D1023Tfs*49	ENST00000382592	NM_014572.2	1023	Gac/ac																																																																															
FLT1	2321	MSKCC	GRCh37	13	28903859	28903859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	114	365	0	ENST00000282397.4:c.2600C>T	p.Ala867Val	p.A867V	ENST00000282397	NM_002019.4	867	gCc/gTc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73335837	73335837	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372878316		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	33	326	0	ENST00000377767.4:c.2458C>T	p.Arg820Trp	p.R820W	ENST00000377767	NM_014953.3	820	Cgg/Tgg																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40679397	40679397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	33	323	0	ENST00000249776.8:c.475G>A	p.Val159Ile	p.V159I	ENST00000249776	NM_033286.3	159	Gtc/Atc																																																																															
MGA	23269	MSKCC	GRCh37	15	42005581	42005581	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1222351854		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	60	423	0	ENST00000219905.7:c.3317G>A	p.Arg1106Gln	p.R1106Q	ENST00000219905	NM_001164273.1	1106	cGa/cAa																																																																															
MGA	23269	MSKCC	GRCh37	15	42041893	42041893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	31	394	0	ENST00000219905.7:c.6088G>A	p.Asp2030Asn	p.D2030N	ENST00000219905	NM_001164273.1	2030	Gat/Aat																																																																															
MGA	23269	MSKCC	GRCh37	15	42054348	42054348	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	26	301	0	ENST00000219905.7:c.7532T>C	p.Leu2511Pro	p.L2511P	ENST00000219905	NM_001164273.1	2511	cTg/cCg																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	106	422	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347945	347945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			722	51	580	0	ENST00000262320.3:c.1561G>T	p.Gly521Trp	p.G521W	ENST00000262320	NM_003502.3	521	Ggg/Tgg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2126556	2126556	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	135	431	0	ENST00000219476.3:c.2807G>T	p.Arg936Leu	p.R936L	ENST00000219476	NM_000548.3	936	cGg/cTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134418	2134418	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45466399		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	94	525	0	ENST00000219476.3:c.4195G>A	p.Gly1399Arg	p.G1399R	ENST00000219476	NM_000548.3	1399	Ggg/Agg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639156	3639156	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762565535		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	142	480	0	ENST00000294008.3:c.4483G>A	p.Ala1495Thr	p.A1495T	ENST00000294008	NM_032444.2	1495	Gcg/Acg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843413	3843413	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	40	386	0	ENST00000262367.5:c.1190A>G	p.His397Arg	p.H397R	ENST00000262367	NM_004380.2	397	cAt/cGt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923339	9923339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	98	372	0	ENST00000330684.3:c.1948G>T	p.Ala650Ser	p.A650S	ENST00000330684	NM_001134407.1	650	Gct/Tct																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032332	10032332	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	77	355	0	ENST00000330684.3:c.491A>G	p.Asp164Gly	p.D164G	ENST00000330684	NM_001134407.1	164	gAt/gGt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23652431	23652431	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	32	333	0	ENST00000261584.4:c.48G>T	p.Lys16Asn	p.K16N	ENST00000261584	NM_024675.3	16	aaG/aaT																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645139	67645140	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	107	407	0	ENST00000264010.4:c.409dup	p.Ala137GlyfsTer3	p.A137Gfs*3	ENST00000264010	NM_006565.3	135	cag/caGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			729	30	527	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028675	12028675	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	111	349	0	ENST00000353533.5:c.878T>C	p.Leu293Ser	p.L293S	ENST00000353533	NM_003010.3	293	tTg/tCg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15950315	15950315	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753754400		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	29	311	0	ENST00000268712.3:c.6629A>G	p.Gln2210Arg	p.Q2210R	ENST00000268712	NM_006311.3	2210	cAg/cGg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	108	426	0	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	125	574	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436149	56436149	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	110	445	0	ENST00000407977.2:c.988C>T	p.Arg330Ter	p.R330*	ENST00000407977		330	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	117	406	0	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs758630849		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	35	382	0	ENST00000305921.3:c.1349del	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533946	63533949	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	83	452	0	ENST00000307078.5:c.1205_1208del	p.Glu402GlyfsTer55	p.E402Gfs*55	ENST00000307078	NM_004655.3	402	gAAGAg/gg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63545635	63545636	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	101	431	0	ENST00000307078.5:c.956+2_956+3del		p.X319_splice	ENST00000307078	NM_004655.3	319																																																																																
SOX9	6662	MSKCC	GRCh37	17	70119758	70119758	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	85	302	0	ENST00000245479.2:c.760C>T	p.Arg254Ter	p.R254*	ENST00000245479	NM_000346.3	254	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1297203260		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	43	448	1	ENST00000245479.2:c.916del	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78796038	78796038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	62	446	0	ENST00000306801.3:c.928G>T	p.Gly310Cys	p.G310C	ENST00000306801	NM_020761.2	310	Ggt/Tgt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395706	45395706	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	92	329	0	ENST00000262160.6:c.428T>C	p.Leu143Pro	p.L143P	ENST00000262160	NM_005901.5	143	cTc/cCc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216575	2216575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1448752235		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	43	559	0	ENST00000398665.3:c.2219C>T	p.Ala740Val	p.A740V	ENST00000398665	NM_032482.2	740	gCc/gTc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5219369	5219369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	79	448	0	ENST00000357368.4:c.3875C>T	p.Ala1292Val	p.A1292V	ENST00000357368	NM_002850.3	1292	gCc/gTc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229523	5229523	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	33	385	0	ENST00000357368.4:c.2328C>G	p.Asp776Glu	p.D776E	ENST00000357368	NM_002850.3	776	gaC/gaG																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265301	10265301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	112	502	0	ENST00000340748.4:c.1745G>A	p.Arg582Gln	p.R582Q	ENST00000340748		582	cGg/cAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098540	11098540	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	134	513	0	ENST00000344626.4:c.1062del	p.Ile355SerfsTer56	p.I355Sfs*56	ENST00000344626	NM_003072.3	353	aCc/ac																																																																															
CALR	811	MSKCC	GRCh37	19	13051693	13051693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	86	345	0	ENST00000316448.5:c.952C>A	p.Leu318Ile	p.L318I	ENST00000316448	NM_004343.3	318	Ctc/Atc																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793010	33793010	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs974386262		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	31	306	0	ENST00000498907.2:c.311G>A	p.Gly104Asp	p.G104D	ENST00000498907	NM_004364.3	104	gGc/gAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210725	36210725	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	87	467	0	ENST00000222270.7:c.481del	p.Leu161PhefsTer6	p.L161Ffs*6	ENST00000222270	NM_014727.1	159	aCc/ac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			774	124	599	2	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
RRAS	6237	MSKCC	GRCh37	19	50139082	50139082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758697481		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	89	255	0	ENST00000246792.3:c.481G>A	p.Gly161Ser	p.G161S	ENST00000246792	NM_006270.3	161	Ggc/Agc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909776	50909776	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	99	374	0	ENST00000440232.2:c.1494+2T>C		p.X498_splice	ENST00000440232	NM_002691.3	498																																																																																
ALK	238	MSKCC	GRCh37	2	29432743	29432743	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	78	323	0	ENST00000389048.3:c.3745G>A	p.Asp1249Asn	p.D1249N	ENST00000389048	NM_004304.4	1249	Gac/Aac																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213243	39213243	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			732	95	480	3	ENST00000402219.2:c.3724del	p.Ser1242ValfsTer37	p.S1242Vfs*37	ENST00000402219	NM_005633.3	1242	Agt/gt																																																																															
BARD1	580	MSKCC	GRCh37	2	215610468	215610468	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	28	281	2	ENST00000260947.4:c.1788del	p.Lys596AsnfsTer9	p.K596Nfs*9	ENST00000260947	NM_000465.2	596	aaA/aa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662517	227662517	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	65	526	0	ENST00000305123.5:c.938del	p.Pro313ArgfsTer35	p.P313Rfs*35	ENST00000305123	NM_005544.2	313	cCg/cg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40757458	40757458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	99	385	0	ENST00000373198.4:c.2840G>A	p.Arg947Gln	p.R947Q	ENST00000373198	NM_133170.3	947	cGg/cAg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29106048	29106048	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs730881687		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	28	123	0	ENST00000328354.6:c.793-1G>T		p.X265_splice	ENST00000328354	NM_007194.3	265																																																																																
ZNRF3	84133	MSKCC	GRCh37	22	29279870	29279870	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	54	188	0	ENST00000544604.2:c.116T>C	p.Leu39Pro	p.L39P	ENST00000544604	NM_001206998.1	39	cTg/cCg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445404	29445404	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	133	533	0	ENST00000544604.2:c.1239del	p.Ala414ProfsTer38	p.A414Pfs*38	ENST00000544604	NM_001206998.1	412	aCc/ac																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446196	29446196	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	81	441	0	ENST00000544604.2:c.2031del	p.Asn679IlefsTer94	p.N679Ifs*94	ENST00000544604	NM_001206998.1	676	aGg/ag																																																																															
MLH1	4292	MSKCC	GRCh37	3	37090465	37090465	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781310		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	86	321	0	ENST00000231790.2:c.2060G>A	p.Arg687Gln	p.R687Q	ENST00000231790	NM_000249.3	687	cGg/cAg																																																																															
MST1	4485	MSKCC	GRCh37	3	49723550	49723550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781417789		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			60	10	55	0	ENST00000449682.2:c.1092G>A	p.Met364Ile	p.M364I	ENST00000449682	NM_020998.3	364	atG/atA																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	125	516	3	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	86	334	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP63	8626	MSKCC	GRCh37	3	189526209	189526210	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs1462944177		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			777	83	569	0	ENST00000264731.3:c.480_481del	p.Pro161IlefsTer36	p.P161Ifs*36	ENST00000264731	NM_003722.4	158	gCT/g																																																																															
KDR	3791	MSKCC	GRCh37	4	55991435	55991435	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	32	349	0	ENST00000263923.4:c.26T>A	p.Val9Asp	p.V9D	ENST00000263923	NM_002253.2	9	gTc/gAc																																																																															
TET2	54790	MSKCC	GRCh37	4	106164860	106164860	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	34	344	0	ENST00000380013.4:c.3728A>C	p.Lys1243Thr	p.K1243T	ENST00000380013	NM_001127208.2	1243	aAa/aCa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244052	153244052	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	90	448	0	ENST00000281708.4:c.2105T>C	p.Phe702Ser	p.F702S	ENST00000281708	NM_033632.3	702	tTt/tCt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244103	153244103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	146	480	0	ENST00000281708.4:c.2054C>T	p.Ala685Val	p.A685V	ENST00000281708	NM_033632.3	685	gCa/gTa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	53	264	0	ENST00000303115.3:c.361del	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591064	67591064	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	30	310	0	ENST00000274335.5:c.1657G>C	p.Ala553Pro	p.A553P	ENST00000274335		553	Gca/Cca																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158465	26158467	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs766586530		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	99	420	0	ENST00000289316.2:c.73_75del	p.Lys25del	p.K25del	ENST00000289316	NM_138720.2	23	cAGAag/cag																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31238246	31238247	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	72	381	0	ENST00000376228.5:c.635_636del	p.His212ArgfsTer8	p.H212Rfs*8	ENST00000376228	NM_002117.5	212	cAC/c																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239794	31239794	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			760	47	518	0	ENST00000376228.5:c.55del	p.Leu19Ter	p.L19*	ENST00000376228	NM_002117.5	19	Ctg/tg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324917	31324917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			728	144	604	0	ENST00000412585.2:c.19del	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000412585	NM_005514.6	7	Cga/ga																																																																															
PRDM1	639	MSKCC	GRCh37	6	106547410	106547410	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	89	375	2	ENST00000369096.4:c.647T>C	p.Leu216Pro	p.L216P	ENST00000369096	NM_001198.3	216	cTg/cCg																																																																															
SESN1	27244	MSKCC	GRCh37	6	109311999	109311999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1475851538		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	51	243	0	ENST00000436639.2:c.1273C>T	p.Arg425Cys	p.R425C	ENST00000436639	NM_014454.2	425	Cgc/Tgc																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969953	161969953	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746620234		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	29	317	0	ENST00000366898.1:c.1016C>T	p.Ala339Val	p.A339V	ENST00000366898	NM_004562.2	339	gCg/gTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962854	2962854	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	78	364	0	ENST00000396946.4:c.2054del	p.Gly685AlafsTer31	p.G685Afs*31	ENST00000396946	NM_032415.4	685	gGc/gc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509436	106509436	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200175951		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	37	455	0	ENST00000359195.3:c.1430G>A	p.Arg477His	p.R477H	ENST00000359195	NM_002649.2	477	cGt/cAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140434549	140434549	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	27	270	0	ENST00000288602.6:c.2149C>G	p.Leu717Val	p.L717V	ENST00000288602	NM_004333.4	717	Ctg/Gtg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187222	38187222	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	138	392	0	ENST00000317025.8:c.1255del	p.Thr419ProfsTer8	p.T419Pfs*8	ENST00000317025	NM_023034.1	419	Acc/cc																																																																															
NBN	4683	MSKCC	GRCh37	8	90965665	90965666	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs766044684		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	37	271	1	ENST00000265433.3:c.1651dup	p.Arg551LysfsTer5	p.R551Kfs*5	ENST00000265433	NM_002485.4	551	agg/aAgg																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22008939	22008939	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	38	330	0	ENST00000276925.6:c.14A>T	p.Asn5Ile	p.N5I	ENST00000276925	NM_004936.3	5	aAc/aTc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250455	110250455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	28	380	0	ENST00000374672.4:c.220C>A	p.Leu74Met	p.L74M	ENST00000374672	NM_004235.4	74	Ctg/Atg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781244	135781244	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs548002938		P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	133	471	0	ENST00000298552.3:c.1721C>G	p.Thr574Ser	p.T574S	ENST00000298552	NM_001162426.1	574	aCt/aGt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300040	137300040	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	91	334	0	ENST00000481739.1:c.331del	p.Leu111TrpfsTer57	p.L111Wfs*57	ENST00000481739	NM_002957.4	109	Ccc/cc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390641	139390641	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			789	42	546	0	ENST00000277541.6:c.7550C>A	p.Pro2517His	p.P2517H	ENST00000277541	NM_017617.3	2517	cCt/cAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396887	139396887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	39	345	0	ENST00000277541.6:c.5221G>A	p.Ala1741Thr	p.A1741T	ENST00000277541	NM_017617.3	1741	Gcg/Acg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44879903	44879903	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	66	258	0	ENST00000377967.4:c.492T>A	p.Cys164Ter	p.C164*	ENST00000377967	NM_021140.2	164	tgT/tgA																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652397	48652397	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	36	469	0	ENST00000376670.3:c.1073del	p.Pro358GlnfsTer74	p.P358Qfs*74	ENST00000376670	NM_002049.3	356	ggC/gg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411276	63411276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	142	548	0	ENST00000330258.3:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000330258	NM_152424.3	631	Cga/Tga																																																																															
AR	367	MSKCC	GRCh37	X	66765736	66765736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	128	515	0	ENST00000374690.3:c.748G>A	p.Gly250Ser	p.G250S	ENST00000374690	NM_000044.3	250	Ggt/Agt																																																																															
ATRX	546	MSKCC	GRCh37	X	76938230	76938230	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	56	277	0	ENST00000373344.5:c.2518del	p.Arg840GlufsTer29	p.R840Efs*29	ENST00000373344	NM_000489.3	840	Aga/ga																																																																															
PHF6	84295	MSKCC	GRCh37	X	133527535	133527535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	20	285	0	ENST00000332070.3:c.245G>A	p.Cys82Tyr	p.C82Y	ENST00000332070	NM_032458.2	82	tGt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0073227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	88	421	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0073227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	128	507	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
SOS1	6654	MSKCC	GRCh37	2	39234309	39234309	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397517159		P-0073227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	53	236	0	ENST00000402219.2:c.2536G>A	p.Glu846Lys	p.E846K	ENST00000402219	NM_005633.3	846	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0073227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	43	261	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112154975	112154976	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACTGTGAA			P-0073227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	80	383	0	ENST00000257430.4:c.1249_1256dup	p.Cys420ValfsTer37	p.C420Vfs*37	ENST00000257430	NM_000038.5	416	tac/tACTGTGAAac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	26	444	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913407		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	80	352	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023598	31023598	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200702600		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	40	375	0	ENST00000375687.4:c.3083C>T	p.Ser1028Leu	p.S1028L	ENST00000375687	NM_015338.5	1028	tCg/tTg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	17	412	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	22	351	2	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																															
CBL	867	MSKCC	GRCh37	11	119077232	119077233	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAC	rs373212940		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	43	719	1	ENST00000264033.4:c.125_127dup	p.His42dup	p.H42dup	ENST00000264033	NM_005188.3	42	-/CAC																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100425	8100425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	14	489	3	ENST00000346208.3:c.404del	p.Pro135ArgfsTer60	p.P135Rfs*60	ENST00000346208		133	taC/ta																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134977949	134977949	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56186270		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			75	17	301	0	ENST00000398015.3:c.2942C>T	p.Thr981Met	p.T981M	ENST00000398015	NM_004441.4	981	aCg/aTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106099	27106100	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	62	386	0	ENST00000324856.7:c.5715dup	p.Arg1906ThrfsTer8	p.R1906Tfs*8	ENST00000324856	NM_006015.4	1904	gaa/gAaa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			73	29	298	1	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17118502	17118502	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs879255678		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	72	403	0	ENST00000285071.4:c.1429C>T	p.Arg477Ter	p.R477*	ENST00000285071	NM_144997.5	477	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11317099	11317099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201093943		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	26	424	1	ENST00000361445.4:c.395G>A	p.Arg132His	p.R132H	ENST00000361445	NM_004958.3	132	cGt/cAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	16	444	3	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs758740142		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	23	211	2	ENST00000265335.6:c.2801del	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	48	260	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686901	37686901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	19	282	0	ENST00000447079.4:c.3810del	p.Gly1271AspfsTer23	p.G1271Dfs*23	ENST00000447079	NM_015083.1	1269	Ccc/cc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5072525	5072526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	19	240	0	ENST00000381652.3:c.1680dup	p.Lys561Ter	p.K561*	ENST00000381652	NM_004972.3	559	att/aTtt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099103	27099103	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	18	426	1	ENST00000324856.7:c.3524del	p.Pro1175HisfsTer5	p.P1175Hfs*5	ENST00000324856	NM_006015.4	1173	atC/at																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	11	324	0	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																															
MGA	23269	MSKCC	GRCh37	15	42003059	42003059	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	34	304	0	ENST00000219905.7:c.2596C>T	p.Arg866Ter	p.R866*	ENST00000219905	NM_001164273.1	866	Cga/Tga																																																																															
MGA	23269	MSKCC	GRCh37	15	42054013	42054013	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377036527		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	10	233	0	ENST00000219905.7:c.7475G>A	p.Arg2492Gln	p.R2492Q	ENST00000219905	NM_001164273.1	2492	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	10	300	0	ENST00000263967.3:c.316G>T	p.Gly106Cys	p.G106C	ENST00000263967	NM_006218.2	106	Ggc/Tgc																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239830	31239830	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	32	476	0	ENST00000376228.5:c.19del	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000376228	NM_002117.5	7	Cga/ga																																																																															
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	C			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	41	322	0	ENST00000558401.1:c.1A>C	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Ctg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	47	245	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	19	357	3	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																															
BARD1	580	MSKCC	GRCh37	2	215610468	215610468	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	12	308	0	ENST00000260947.4:c.1788del	p.Lys596AsnfsTer9	p.K596Nfs*9	ENST00000260947	NM_000465.2	596	aaA/aa																																																																															
GNA11	2767	MSKCC	GRCh37	19	3114967	3114967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	20	379	0	ENST00000078429.4:c.502G>A	p.Ala168Thr	p.A168T	ENST00000078429	NM_002067.2	168	Gcc/Acc																																																																															
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	30	308	0	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220070	36220070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	17	452	0	ENST00000222270.7:c.4790G>A	p.Arg1597Gln	p.R1597Q	ENST00000222270	NM_014727.1	1597	cGg/cAg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969369	44969369	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1318649487		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	20	252	0	ENST00000377967.4:c.4051C>T	p.Arg1351Ter	p.R1351*	ENST00000377967	NM_021140.2	1351	Cga/Tga																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524364	176524364	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759042869		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	29	371	0	ENST00000292408.4:c.2225C>T	p.Ala742Val	p.A742V	ENST00000292408	NM_213647.1	742	gCg/gTg																																																																															
AKT2	208	MSKCC	GRCh37	19	40741201	40741201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	49	289	0	ENST00000392038.2:c.1232G>A	p.Ser411Asn	p.S411N	ENST00000392038	NM_001626.4	411	aGc/aAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956766	68956766	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	16	245	0	ENST00000288368.4:c.888del	p.Arg297ValfsTer8	p.R297Vfs*8	ENST00000288368	NM_024870.2	295	cTt/ct																																																																															
ERG	2078	MSKCC	GRCh37	21	39795390	39795392	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	22	411	0	ENST00000288319.7:c.328_330del	p.Glu110del	p.E110del	ENST00000288319	NM_182918.3	110	GAG/-																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563285	21563285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1207863433		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	11	380	0	ENST00000382592.4:c.634G>A	p.Val212Met	p.V212M	ENST00000382592	NM_014572.2	212	Gtg/Atg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351704	89351704	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200886155		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	45	376	0	ENST00000301030.4:c.1246G>A	p.Ala416Thr	p.A416T	ENST00000301030	NM_001256183.1	416	Gcg/Acg																																																																															
BTK	695	MSKCC	GRCh37	X	100617557	100617557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	13	306	0	ENST00000308731.7:c.512G>T	p.Arg171Met	p.R171M	ENST00000308731	NM_000061.2	171	aGg/aTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226712	2226712	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780009010		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	72	474	0	ENST00000398665.3:c.4192G>A	p.Gly1398Arg	p.G1398R	ENST00000398665	NM_032482.2	1398	Ggg/Agg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61721045	61721045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	30	293	0	ENST00000401558.2:c.1229T>C	p.Leu410Ser	p.L410S	ENST00000401558	NM_003400.3	410	tTg/tCg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2100432	2100432	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397514949		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	63	285	0	ENST00000219476.3:c.170G>A	p.Arg57His	p.R57H	ENST00000219476	NM_000548.3	57	cGc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522328	157522328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs542516057		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	28	518	0	ENST00000346085.5:c.4600C>T	p.Arg1534Cys	p.R1534C	ENST00000346085	NM_020732.3	1534	Cgc/Tgc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356229	66356229	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	23	404	0	ENST00000273854.3:c.1268del	p.Asn423ThrfsTer5	p.N423Tfs*5	ENST00000273854	NM_004439.5	423	aAc/ac																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436396	52436396	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1284965361		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	32	379	0	ENST00000460680.1:c.2098C>T	p.Arg700Trp	p.R700W	ENST00000460680	NM_004656.3	700	Cgg/Tgg																																																																															
KDR	3791	MSKCC	GRCh37	4	55991439	55991439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1424357101		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	18	276	0	ENST00000263923.4:c.22G>A	p.Ala8Thr	p.A8T	ENST00000263923	NM_002253.2	8	Gcc/Acc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180052909	180052909	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1434669520		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			71	39	380	0	ENST00000261937.6:c.1381C>T	p.Arg461Trp	p.R461W	ENST00000261937	NM_182925.4	461	Cgg/Tgg																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628303	90628303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	160	447	0	ENST00000330062.3:c.1108G>A	p.Ala370Thr	p.A370T	ENST00000330062	NM_002168.2	370	Gcc/Acc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2191024	2191024	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1449424439		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	65	296	0	ENST00000398665.3:c.278C>T	p.Thr93Met	p.T93M	ENST00000398665	NM_032482.2	93	aCg/aTg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	364588	364588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	58	348	0	ENST00000262320.3:c.974G>A	p.Ser325Asn	p.S325N	ENST00000262320	NM_003502.3	325	aGc/aAc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31511162	31511162	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754562615		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	24	253	0	ENST00000344624.3:c.1412C>T	p.Thr471Met	p.T471M	ENST00000344624		471	aCg/aTg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526291	31526291	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750540831		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	55	441	0	ENST00000344624.3:c.749G>A	p.Arg250Gln	p.R250Q	ENST00000344624		250	cGg/cAg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503775	47503775	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	69	422	0	ENST00000404338.3:c.4335del	p.Gly1446AlafsTer353	p.G1446Afs*353	ENST00000404338	NM_004491.4	1444	Ccc/cc																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793865	89793866	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	42	343	0	ENST00000336032.3:c.934_935del	p.Arg312GlyfsTer27	p.R312Gfs*27	ENST00000336032	NM_006813.2	312	AGg/g																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324601	31324604	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-	rs766427608		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	56	430	0	ENST00000412585.2:c.204_207del	p.Glu69SerfsTer7	p.E69Sfs*7	ENST00000412585	NM_005514.6	68	agAGAG/ag																																																																															
GAB2	9846	MSKCC	GRCh37	11	77931369	77931369	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769709400		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	39	406	0	ENST00000361507.4:c.1883G>A	p.Arg628His	p.R628H	ENST00000361507	NM_080491.2	628	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231384	5231384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778710485		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	42	350	0	ENST00000357368.4:c.2092G>A	p.Ala698Thr	p.A698T	ENST00000357368	NM_002850.3	698	Gct/Act																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135058	11135058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777562578		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	11	302	0	ENST00000344626.4:c.3025C>T	p.Arg1009Cys	p.R1009C	ENST00000344626	NM_003072.3	1009	Cgc/Tgc																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594885	47594885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	33	441	0	ENST00000395288.2:c.1154G>A	p.Gly385Glu	p.G385E	ENST00000395288	NM_016506.5	385	gGg/gAg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258840	16258840	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	39	505	0	ENST00000375759.3:c.6105G>T	p.Glu2035Asp	p.E2035D	ENST00000375759	NM_015001.2	2035	gaG/gaT																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150921603	150921603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	14	308	0	ENST00000271640.5:c.1273G>A	p.Val425Met	p.V425M	ENST00000271640	NM_001145415.1	425	Gtg/Atg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73345282	73345282	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	42	316	0	ENST00000377767.4:c.1607G>T	p.Arg536Met	p.R536M	ENST00000377767	NM_014953.3	536	aGg/aTg																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230468626	230468626	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753718734		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	10	365	0	ENST00000525115.1:c.1030C>T	p.Arg344Cys	p.R344C	ENST00000525115		344	Cgc/Tgc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170013728	170013728	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754216126		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	27	206	0	ENST00000295797.4:c.1447C>T	p.Arg483Cys	p.R483C	ENST00000295797	NM_002740.5	483	Cgt/Tgt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38952366	38952366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	10	289	0	ENST00000357387.3:c.3059G>A	p.Ser1020Asn	p.S1020N	ENST00000357387	NM_152756.3	1020	aGc/aAc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673138	30673139	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	62	474	0	ENST00000376406.3:c.3821dup	p.Asn1274LysfsTer2	p.N1274Kfs*2	ENST00000376406	NM_014641.2	1274	aat/aaAt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226814	2226814	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	93	478	0	ENST00000398665.3:c.4294G>C	p.Ala1432Pro	p.A1432P	ENST00000398665	NM_032482.2	1432	Gcc/Ccc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348178	348178	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1276495489		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	26	409	0	ENST00000262320.3:c.1328C>T	p.Ala443Val	p.A443V	ENST00000262320	NM_003502.3	443	gCt/gTt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933830	49933831	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	38	413	0	ENST00000296474.3:c.2446_2447del	p.Arg816AlafsTer12	p.R816Afs*12	ENST00000296474	NM_002447.2	816	AGg/g																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31383266	31383267	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	66	372	0	ENST00000328111.2:c.1182dup	p.Ala395ArgfsTer11	p.A395Rfs*11	ENST00000328111	NM_006892.3	393	tgc/tgCc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132548	11132548	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	25	433	0	ENST00000344626.4:c.2764T>G	p.Trp922Gly	p.W922G	ENST00000344626	NM_003072.3	922	Tgg/Ggg																																																																															
APC	324	MSKCC	GRCh37	5	112173964	112173964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	26	319	0	ENST00000257430.4:c.2673G>A	p.Met891Ile	p.M891I	ENST00000257430	NM_000038.5	891	atG/atA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411401	63411401	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	35	468	0	ENST00000330258.3:c.1766A>G	p.His589Arg	p.H589R	ENST00000330258	NM_152424.3	589	cAt/cGt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575100	64575100	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	23	397	0	ENST00000337652.1:c.722T>C	p.Val241Ala	p.V241A	ENST00000337652	NM_130803.2	241	gTg/gCg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248582	212248582	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs774554133		P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	11	412	0	ENST00000342788.4:c.3685A>G	p.Met1229Val	p.M1229V	ENST00000342788	NM_005235.2	1229	Atg/Gtg																																																																															
ARAF	369	MSKCC	GRCh37	X	47424207	47424207	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	15	384	0	ENST00000377045.4:c.212T>C	p.Val71Ala	p.V71A	ENST00000377045	NM_001654.4	71	gTc/gCc																																																																															
CIC	23152	MSKCC	GRCh37	19	42791072	42791072	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	16	412	0	ENST00000575354.2:c.217G>T	p.Glu73Ter	p.E73*	ENST00000575354	NM_015125.3	73	Gaa/Taa																																																																															
REST	5978	MSKCC	GRCh37	4	57776931	57776931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	14	341	0	ENST00000309042.7:c.127G>A	p.Ala43Thr	p.A43T	ENST00000309042	NM_005612.4	43	Gca/Aca																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933687	49933687	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	33	450	0	ENST00000296474.3:c.2590C>A	p.His864Asn	p.H864N	ENST00000296474	NM_002447.2	864	Cat/Aat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992966	72992966	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	10	357	0	ENST00000268489.5:c.1079C>A	p.Pro360His	p.P360H	ENST00000268489	NM_006885.3	360	cCc/cAc																																																																															
HRAS	3265	MSKCC	GRCh37	11	533773	533773	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	27	329	0	ENST00000311189.7:c.283C>A	p.Gln95Lys	p.Q95K	ENST00000311189		95	Cag/Aag																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911107	29911107	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	40	404	0	ENST00000376809.5:c.406G>T	p.Gly136Trp	p.G136W	ENST00000376809	NM_002116.7	136	Ggg/Tgg																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230486808	230486808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	25	341	0	ENST00000525115.1:c.583C>T	p.Pro195Ser	p.P195S	ENST00000525115		195	Cct/Tct																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502256	157502256	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	65	394	0	ENST00000346085.5:c.3292del	p.Leu1098TrpfsTer32	p.L1098Wfs*32	ENST00000346085	NM_020732.3	1097	Ccc/cc																																																																															
KDR	3791	MSKCC	GRCh37	4	55956230	55956230	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	18	281	0	ENST00000263923.4:c.3085C>A	p.Leu1029Met	p.L1029M	ENST00000263923	NM_002253.2	1029	Ctg/Atg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43714090	43714091	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0073305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	38	377	0	ENST00000382044.4:c.4062dup	p.Ala1355CysfsTer15	p.A1355Cfs*15	ENST00000382044	NM_001141980.1	1354	-/T																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0073313-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	171	347	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
BCL6	604	MSKCC	GRCh37	3	187446845	187446845	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201771435		P-0073313-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	83	367	2	ENST00000232014.4:c.1348G>A	p.Val450Ile	p.V450I	ENST00000232014	NM_001130845.1	450	Gtt/Att																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15960883	15960883	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073313-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	51	288	0	ENST00000268712.3:c.6337C>G	p.Gln2113Glu	p.Q2113E	ENST00000268712	NM_006311.3	2113	Caa/Gaa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38274872	38274872	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201158796		P-0073313-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	54	324	0	ENST00000425967.3:c.1708G>A	p.Gly570Arg	p.G570R	ENST00000425967	NM_001174067.1	570	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0073328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	104	392	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0073328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	146	236	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0073329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	126	361	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0073329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	117	270	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175360	112175360	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	69	384	0	ENST00000257430.4:c.4069G>T	p.Gly1357Ter	p.G1357*	ENST00000257430	NM_000038.5	1357	Gga/Tga																																																																															
POLE	5426	MSKCC	GRCh37	12	133250250	133250250	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs483352909		P-0073329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	115	468	0	ENST00000320574.5:c.1270C>T	p.Leu424Phe	p.L424F	ENST00000320574	NM_006231.2	424	Ctc/Ttc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986742	36986742	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778389039		P-0073329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	100	388	0	ENST00000354822.5:c.947C>T	p.Ala316Val	p.A316V	ENST00000354822	NM_001079668.2	316	gCg/gTg																																																																															
MYD88	4615	MSKCC	GRCh37	3	38181911	38181911	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	155	439	0	ENST00000396334.3:c.535T>C	p.Cys179Arg	p.C179R	ENST00000396334	NM_002468.4	179	Tgc/Cgc																																																																															
KDR	3791	MSKCC	GRCh37	4	55984877	55984877	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	130	342	1	ENST00000263923.4:c.252C>A	p.Phe84Leu	p.F84L	ENST00000263923	NM_002253.2	84	ttC/ttA																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775957	9775957	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765297753		P-0073329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	200	382	0	ENST00000377346.4:c.421G>A	p.Ala141Thr	p.A141T	ENST00000377346	NM_005026.3	141	Gcc/Acc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258735	16258735	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			820	49	487	0	ENST00000375759.3:c.6005del	p.Asn2002MetfsTer20	p.N2002Mfs*20	ENST00000375759	NM_015001.2	2000	ggA/gg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097608	27097608	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	71	352	1	ENST00000324856.7:c.3199-2A>G		p.X1067_splice	ENST00000324856	NM_006015.4	1067																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	60	456	0	ENST00000324856.7:c.4550C>T	p.Ala1517Val	p.A1517V	ENST00000324856	NM_006015.4	1517	gCc/gTc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241924	72241924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs552625764		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	158	337	0	ENST00000357731.5:c.466G>A	p.Val156Ile	p.V156I	ENST00000357731	NM_173808.2	156	Gtc/Atc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78425869	78425869	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	137	399	0	ENST00000370768.2:c.1576G>A	p.Ala526Thr	p.A526T	ENST00000370768	NM_003902.3	526	Gct/Act																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115266531	115266531	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	44	290	0	ENST00000438362.2:c.1984C>T	p.Gln662Ter	p.Q662*	ENST00000438362	NM_001242891.1	662	Caa/Taa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162741936	162741936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55973200		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	73	409	0	ENST00000367921.3:c.1627G>A	p.Val543Ile	p.V543I	ENST00000367921	NM_006182.2	543	Gtc/Atc																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488894	231488894	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	32	361	0	ENST00000295050.7:c.1263del	p.Phe421LeufsTer7	p.F421Lfs*7	ENST00000295050	NM_032018.5	419	aaT/aa																																																																															
FH	2271	MSKCC	GRCh37	1	241680484	241680484	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1489304373		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	48	241	0	ENST00000366560.3:c.265C>T	p.Pro89Ser	p.P89S	ENST00000366560	NM_000143.3	89	Cca/Tca																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097841	8097841	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	47	347	0	ENST00000346208.3:c.223T>C	p.Tyr75His	p.Y75H	ENST00000346208		75	Tac/Cac																																																																															
TET1	80312	MSKCC	GRCh37	10	70332152	70332153	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1196853334		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	36	368	1	ENST00000373644.4:c.65dup	p.Lys23GlufsTer37	p.K23Efs*37	ENST00000373644	NM_030625.2	19	-/A																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	222	294	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123239405	123239405	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	52	394	0	ENST00000358487.5:c.2432A>G	p.Gln811Arg	p.Q811R	ENST00000358487	NM_000141.4	811	cAg/cGg																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154241	2154242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755455183		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	119	460	0	ENST00000434045.2:c.686dup	p.Glu230ArgfsTer50	p.E230Rfs*50	ENST00000434045	NM_001127598.1	229	cca/ccCa																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14303193	14303193	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	29	228	0	ENST00000256196.4:c.482G>T	p.Arg161Met	p.R161M	ENST00000256196		161	aGg/aTg																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594883	47594883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780075355		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			808	88	476	2	ENST00000395288.2:c.1156del	p.Glu386ArgfsTer27	p.E386Rfs*27	ENST00000395288	NM_016506.5	386	Gag/ag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137271	64137271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	71	408	0	ENST00000334205.4:c.1703C>T	p.Thr568Met	p.T568M	ENST00000334205	NM_003942.2	568	aCg/aTg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	39	449	4	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200097	67200097	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs753125285		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	90	398	0	ENST00000312629.5:c.484C>T	p.Arg162Ter	p.R162*	ENST00000312629	NM_003952.2	162	Cga/Tga																																																																															
EED	8726	MSKCC	GRCh37	11	85979553	85979553	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	34	274	0	ENST00000263360.6:c.916A>G	p.Arg306Gly	p.R306G	ENST00000263360	NM_003797.3	306	Agg/Ggg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	440993	440993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	59	310	0	ENST00000399788.2:c.1765G>A	p.Ala589Thr	p.A589T	ENST00000399788	NM_001042603.1	589	Gct/Act																																																																															
KDM5A	5927	MSKCC	GRCh37	12	442811	442811	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	173	347	0	ENST00000399788.2:c.1495del	p.Glu499SerfsTer19	p.E499Sfs*19	ENST00000399788	NM_001042603.1	499	Gag/ag																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025982	1025982	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	75	331	0	ENST00000358495.3:c.548C>A	p.Pro183His	p.P183H	ENST00000358495	NM_134424.2	183	cCt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420289	49420289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768551828		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	72	411	0	ENST00000301067.7:c.15460C>T	p.Arg5154Trp	p.R5154W	ENST00000301067	NM_003482.3	5154	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	65	408	1	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445202	49445203	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			779	76	517	0	ENST00000301067.7:c.2263dup	p.Arg755ProfsTer3	p.R755Pfs*3	ENST00000301067	NM_003482.3	755	cgg/cCgg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	215	399	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489040	56489040	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	60	288	0	ENST00000267101.3:c.1860-1G>T		p.X620_splice	ENST00000267101	NM_001982.3	620																																																																																
GLI1	2735	MSKCC	GRCh37	12	57865711	57865711	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	48	466	0	ENST00000228682.2:c.3188C>A	p.Pro1063His	p.P1063H	ENST00000228682	NM_005269.2	1063	cCt/cAt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885939	111885939	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			718	50	441	1	ENST00000341259.2:c.1566del	p.Glu523SerfsTer25	p.E523Sfs*25	ENST00000341259	NM_005475.2	521	Ccc/cc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120671	115120671	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	71	466	0	ENST00000257566.3:c.335T>G	p.Leu112Arg	p.L112R	ENST00000257566	NM_016569.3	112	cTt/cGt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	51	415	0	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
POLE	5426	MSKCC	GRCh37	12	133245023	133245024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs767646338		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	146	453	1	ENST00000320574.5:c.2091dup	p.Phe699ValfsTer11	p.F699Vfs*11	ENST00000320574	NM_006231.2	697	-/C																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964206	28964206	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	42	314	0	ENST00000282397.4:c.1696del	p.Met566CysfsTer8	p.M566Cfs*8	ENST00000282397	NM_002019.4	566	Atg/tg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29002020	29002020	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs974445913		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	31	274	0	ENST00000282397.4:c.1145G>A	p.Arg382His	p.R382H	ENST00000282397	NM_002019.4	382	cGc/cAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913079	32913080	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs745456776		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	56	393	0	ENST00000380152.3:c.4593dup	p.Val1532SerfsTer2	p.V1532Sfs*2	ENST00000380152		1529	-/A																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134211	41134211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	68	383	0	ENST00000379561.5:c.1417del	p.His473IlefsTer5	p.H473Ifs*5	ENST00000379561	NM_002015.3	473	Cat/at																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41239933	41239933	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	44	255	0	ENST00000379561.5:c.417del	p.Ala140ProfsTer193	p.A140Pfs*193	ENST00000379561	NM_002015.3	139	ccC/cc																																																																															
KLF5	688	MSKCC	GRCh37	13	73649861	73649861	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs374994842		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	67	325	0	ENST00000377687.4:c.1211A>G	p.Lys404Arg	p.K404R	ENST00000377687	NM_001730.3	404	aAg/aGg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434799	110434799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1487151455		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	161	401	0	ENST00000375856.3:c.3602C>T	p.Pro1201Leu	p.P1201L	ENST00000375856	NM_003749.2	1201	cCc/cTc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061114	38061114	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	155	352	0	ENST00000250448.2:c.875A>C	p.Glu292Ala	p.E292A	ENST00000250448	NM_004496.3	292	gAg/gCg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061725	38061726	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs766493600		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	39	506	2	ENST00000250448.2:c.263dup	p.Ser89LeufsTer138	p.S89Lfs*138	ENST00000250448	NM_004496.3	88	ggc/ggGc																																																																															
MGA	23269	MSKCC	GRCh37	15	42054516	42054516	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	42	253	0	ENST00000219905.7:c.7704del	p.Lys2569AsnfsTer3	p.K2569Nfs*3	ENST00000219905	NM_001164273.1	2567	aGg/ag																																																																															
MGA	23269	MSKCC	GRCh37	15	42054541	42054541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1458609443		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	28	226	0	ENST00000219905.7:c.7731del	p.Asp2578ThrfsTer10	p.D2578Tfs*10	ENST00000219905	NM_001164273.1	2575	agA/ag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680751	88680751	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201252722		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	156	293	0	ENST00000360948.2:c.506G>A	p.Arg169His	p.R169H	ENST00000360948	NM_001012338.2	169	cGc/cAc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			783	44	444	0	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																																																															
BLM	641	MSKCC	GRCh37	15	91354561	91354561	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	220	409	0	ENST00000355112.3:c.4001G>T	p.Arg1334Met	p.R1334M	ENST00000355112	NM_000057.2	1334	aGg/aTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136747	2136747	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769913589		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	236	382	0	ENST00000219476.3:c.4864G>A	p.Ala1622Thr	p.A1622T	ENST00000219476	NM_000548.3	1622	Gcc/Acc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778126	3778126	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	83	518	0	ENST00000262367.5:c.6922C>A	p.Pro2308Thr	p.P2308T	ENST00000262367	NM_004380.2	2308	Cca/Aca																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778282	3778282	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	61	477	1	ENST00000262367.5:c.6766del	p.Leu2256SerfsTer46	p.L2256Sfs*46	ENST00000262367	NM_004380.2	2256	Ctc/tc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273892	10273892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	66	348	0	ENST00000330684.3:c.377G>A	p.Gly126Asp	p.G126D	ENST00000330684	NM_001134407.1	126	gGc/gAc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646553	23646553	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs515726065		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	53	325	0	ENST00000261584.4:c.1314del	p.Phe440LeufsTer12	p.F440Lfs*12	ENST00000261584	NM_024675.3	438	aaA/aa																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30128541	30128541	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	74	467	0	ENST00000263025.4:c.841C>A	p.Leu281Ile	p.L281I	ENST00000263025	NM_002746.2	281	Cta/Ata																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			805	97	476	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821875	72821875	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			767	77	475	0	ENST00000268489.5:c.10300del	p.Leu3434SerfsTer51	p.L3434Sfs*51	ENST00000268489	NM_006885.3	3434	Ctc/tc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993730	72993731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769936196		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			737	39	511	0	ENST00000268489.5:c.314dup	p.Pro106AlafsTer13	p.P106Afs*13	ENST00000268489	NM_006885.3	105	ccg/ccCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993832	72993832	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	61	391	0	ENST00000268489.5:c.213del	p.Ser72ProfsTer37	p.S72Pfs*37	ENST00000268489	NM_006885.3	71	ccC/cc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942124	81942125	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	38	399	0	ENST00000359376.3:c.1667dup	p.Lys557GlnfsTer16	p.K557Qfs*16	ENST00000359376	NM_002661.3	554	acg/acGg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81968073	81968073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	47	311	0	ENST00000359376.3:c.2779G>A	p.Ala927Thr	p.A927T	ENST00000359376	NM_002661.3	927	Gcc/Acc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351149	89351149	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs772229371		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	219	426	0	ENST00000301030.4:c.1801C>T	p.Arg601Ter	p.R601*	ENST00000301030	NM_001256183.1	601	Cga/Tga																																																																															
FANCA	2175	MSKCC	GRCh37	16	89857935	89857935	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11646374		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	186	370	0	ENST00000389301.3:c.1235C>T	p.Ala412Val	p.A412V	ENST00000389301	NM_000135.2	412	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7573944	7573944	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	28	282	0	ENST00000269305.4:c.1083del	p.Ser362AlafsTer8	p.S362Afs*8	ENST00000269305	NM_001126112.2	361	ggG/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576883	7576883	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	234	500	0	ENST00000269305.4:c.963del	p.Lys321AsnfsTer24	p.K321Nfs*24	ENST00000269305	NM_001126112.2	321	aaA/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs28934873		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	73	377	0	ENST00000269305.4:c.398T>C	p.Met133Thr	p.M133T	ENST00000269305	NM_001126112.2	133	aTg/aCg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	149	348	0	ENST00000268712.3:c.1573dup	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																															
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	58	348	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																															
NF1	4763	MSKCC	GRCh37	17	29592312	29592312	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	46	243	0	ENST00000358273.4:c.4790G>T	p.Gly1597Val	p.G1597V	ENST00000358273	NM_001042492.2	1597	gGg/gTg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40855818	40855818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	56	346	0	ENST00000428826.2:c.2038C>T	p.Arg680Trp	p.R680W	ENST00000428826		680	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	263	552	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220365	5220365	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	70	371	0	ENST00000357368.4:c.3456-1G>T		p.X1152_splice	ENST00000357368	NM_002850.3	1152																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	44	350	1	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6262304	6262305	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	89	365	0	ENST00000252674.7:c.210dup	p.Tyr71LeufsTer101	p.Y71Lfs*101	ENST00000252674	NM_005934.3	70	-/C																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288789	15288789	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	52	331	0	ENST00000263388.2:c.3950del	p.Pro1317GlnfsTer103	p.P1317Qfs*103	ENST00000263388	NM_000435.2	1317	cCa/ca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302610	15302611	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1412990396		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	38	447	0	ENST00000263388.2:c.747dup	p.Thr250AspfsTer10	p.T250Dfs*10	ENST00000263388	NM_000435.2	249	-/G																																																																															
UPF1	5976	MSKCC	GRCh37	19	18960950	18960950	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	63	353	0	ENST00000262803.5:c.532del	p.Glu178ArgfsTer55	p.E178Rfs*55	ENST00000262803	NM_002911.3	176	ctG/ct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210892	36210893	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs764234724		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	71	467	0	ENST00000222270.7:c.649dup	p.Arg217ProfsTer35	p.R217Pfs*35	ENST00000222270	NM_014727.1	215	acc/aCcc																																																																															
ERF	2077	MSKCC	GRCh37	19	42754484	42754484	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	167	350	1	ENST00000222329.4:c.256C>T	p.Arg86Cys	p.R86C	ENST00000222329	NM_006494.2	86	Cgc/Tgc																																																																															
CIC	23152	MSKCC	GRCh37	19	42796883	42796883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			768	51	575	0	ENST00000575354.2:c.3347del	p.Pro1116GlnfsTer45	p.P1116Qfs*45	ENST00000575354	NM_015125.3	1114	gCc/gc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424840	47424840	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	88	467	0	ENST00000404338.3:c.2908T>C	p.Ser970Pro	p.S970P	ENST00000404338	NM_004491.4	970	Tcc/Ccc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905151	50905151	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137953986		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	47	439	2	ENST00000440232.2:c.433G>A	p.Ala145Thr	p.A145T	ENST00000440232	NM_002691.3	145	Gct/Act																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906816	50906816	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1426325954		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	164	365	0	ENST00000440232.2:c.1204G>A	p.Asp402Asn	p.D402N	ENST00000440232	NM_002691.3	402	Gac/Aac																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966872	25966873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			865	51	491	1	ENST00000435504.4:c.2333dup	p.Val779SerfsTer25	p.V779Sfs*25	ENST00000435504		778	cca/ccCa																																																																															
ALK	238	MSKCC	GRCh37	2	29606715	29606715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	185	326	0	ENST00000389048.3:c.1165C>T	p.Leu389Phe	p.L389F	ENST00000389048	NM_004304.4	389	Ctc/Ttc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027453	48027453	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs876660037		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	176	392	1	ENST00000234420.5:c.2331G>A	p.Trp777Ter	p.W777*	ENST00000234420	NM_000179.2	777	tgG/tgA																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			742	56	404	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
CASP8	841	MSKCC	GRCh37	2	202131211	202131211	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	35	335	0	ENST00000358485.4:c.179T>C	p.Met60Thr	p.M60T	ENST00000358485	NM_001080125.1	60	aTg/aCg																																																																															
CASP8	841	MSKCC	GRCh37	2	202141584	202141584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	68	336	0	ENST00000358485.4:c.872C>A	p.Pro291His	p.P291H	ENST00000358485	NM_001080125.1	291	cCt/cAt																																																																															
CASP8	841	MSKCC	GRCh37	2	202151205	202151205	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	112	340	0	ENST00000358485.4:c.1505T>C	p.Leu502Pro	p.L502P	ENST00000358485	NM_001080125.1	502	cTg/cCg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	41	459	0	ENST00000375687.4:c.1933_1934dup	p.Gly646ValfsTer58	p.G646Vfs*58	ENST00000375687	NM_015338.5	642	-/GG																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023637	31023637	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	74	433	0	ENST00000375687.4:c.3125del	p.Pro1042HisfsTer5	p.P1042Hfs*5	ENST00000375687	NM_015338.5	1041	gCc/gc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46267895	46267895	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1224684974		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	38	330	0	ENST00000371998.3:c.2656G>A	p.Gly886Ser	p.G886S	ENST00000371998		886	Ggt/Agt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513259	44513259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	202	323	0	ENST00000291552.4:c.676C>T	p.Arg226Cys	p.R226C	ENST00000291552	NM_006758.2	226	Cgt/Tgt																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21336680	21336681	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760808069		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	140	381	1	ENST00000215739.8:c.27dup	p.Gln10AlafsTer24	p.Q10Afs*24	ENST00000215739	NM_006767.3	7	acg/acGg																																																																															
EP300	2033	MSKCC	GRCh37	22	41546066	41546066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			766	55	448	0	ENST00000263253.7:c.2681C>T	p.Pro894Leu	p.P894L	ENST00000263253	NM_001429.3	894	cCc/cTc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	215	390	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
MLH1	4292	MSKCC	GRCh37	3	37081683	37081683	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs63751630		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	39	313	0	ENST00000231790.2:c.1565G>A	p.Arg522Gln	p.R522Q	ENST00000231790	NM_000249.3	522	cGg/cAg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161950	47161951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	80	350	0	ENST00000409792.3:c.4175dup	p.Asn1392LysfsTer6	p.N1392Kfs*6	ENST00000409792	NM_014159.6	1392	aac/aaAc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933438	49933438	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	37	464	0	ENST00000296474.3:c.2752del	p.Leu918CysfsTer18	p.L918Cfs*18	ENST00000296474	NM_002447.2	918	Ctg/tg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52438566	52438566	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	46	391	0	ENST00000460680.1:c.1153C>T	p.Arg385Ter	p.R385*	ENST00000460680	NM_004656.3	385	Cga/Tga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52588797	52588798	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	49	424	2	ENST00000394830.3:c.4230dup	p.Pro1411AlafsTer98	p.P1411Afs*98	ENST00000394830	NM_018313.4	1410	-/G																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52668670	52668671	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	95	301	0	ENST00000394830.3:c.1248dup	p.Tyr417IlefsTer3	p.Y417Ifs*3	ENST00000394830	NM_018313.4	416	-/A																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52685758	52685758	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	20	275	0	ENST00000394830.3:c.714G>T	p.Gln238His	p.Q238H	ENST00000394830	NM_018313.4	238	caG/caT																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448495	89448495	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	45	298	0	ENST00000336596.2:c.1459C>A	p.Leu487Met	p.L487M	ENST00000336596	NM_005233.5	487	Ctg/Atg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413742	138413742	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769082299		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	73	296	0	ENST00000289153.2:c.1778C>T	p.Ala593Val	p.A593V	ENST00000289153	NM_006219.2	593	gCg/gTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	12	202	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182681684	182681684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	44	222	0	ENST00000292782.4:c.374G>A	p.Gly125Asp	p.G125D	ENST00000292782	NM_020640.2	125	gGc/gAc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1940202	1940202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	46	166	0	ENST00000382895.3:c.1699G>A	p.Ala567Thr	p.A567T	ENST00000382895	NM_133330.2	567	Gcc/Acc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957865	1957865	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756624618		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	48	331	0	ENST00000382895.3:c.2831G>A	p.Arg944Gln	p.R944Q	ENST00000382895	NM_133330.2	944	cGg/cAg																																																																															
KDR	3791	MSKCC	GRCh37	4	55971127	55971127	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	49	288	0	ENST00000263923.4:c.1670C>A	p.Pro557His	p.P557H	ENST00000263923	NM_002253.2	557	cCt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	51	347	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249360	153249361	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	26	352	0	ENST00000281708.4:c.1417dup	p.Arg473LysfsTer4	p.R473Kfs*4	ENST00000281708	NM_033632.3	473	aga/aAga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541618	187541618	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369383837		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	240	395	1	ENST00000441802.2:c.6122G>A	p.Arg2041His	p.R2041H	ENST00000441802	NM_005245.3	2041	cGt/cAt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753011	57753012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	157	412	5	ENST00000274289.3:c.1004dup	p.Leu335PhefsTer12	p.L335Ffs*12	ENST00000274289	NM_006622.3	335	ttg/ttTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	65	370	1	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589135	67589135	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	28	331	0	ENST00000274335.5:c.1127del	p.Gly376GlufsTer5	p.G376Efs*5	ENST00000274335		375	Ggg/gg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591246	67591246	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	40	341	3	ENST00000274335.5:c.1746-2A>G		p.X582_splice	ENST00000274335		582																																																																																
RASA1	5921	MSKCC	GRCh37	5	86670674	86670674	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	53	282	0	ENST00000274376.6:c.1952T>C	p.Ile651Thr	p.I651T	ENST00000274376	NM_002890.2	651	aTc/aCc																																																																															
APC	324	MSKCC	GRCh37	5	112170810	112170810	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	103	306	0	ENST00000257430.4:c.1906G>T	p.Gly636Cys	p.G636C	ENST00000257430	NM_000038.5	636	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	127	327	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	166	349	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149511615	149511615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	50	329	0	ENST00000261799.4:c.1170G>T	p.Glu390Asp	p.E390D	ENST00000261799	NM_002609.3	390	gaG/gaT																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512406	149512406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201250234		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	71	463	0	ENST00000261799.4:c.1034C>T	p.Pro345Leu	p.P345L	ENST00000261799	NM_002609.3	345	cCg/cTg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176516607	176516607	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs545721160		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	183	390	1	ENST00000292408.4:c.4C>T	p.Arg2Trp	p.R2W	ENST00000292408	NM_213647.1	2	Cgg/Tgg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523182	176523182	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			751	74	518	0	ENST00000292408.4:c.1944+2T>C		p.X648_splice	ENST00000292408	NM_213647.1	648																																																																																
NSD1	64324	MSKCC	GRCh37	5	176707728	176707728	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	95	428	0	ENST00000439151.2:c.5785G>T	p.Gly1929Trp	p.G1929W	ENST00000439151	NM_022455.4	1929	Ggg/Tgg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176719015	176719015	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1321310131		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			751	84	326	0	ENST00000439151.2:c.6319C>T	p.Arg2107Cys	p.R2107C	ENST00000439151	NM_022455.4	2107	Cgc/Tgc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31322883	31322883	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	36	363	0	ENST00000412585.2:c.1012+1G>A		p.X338_splice	ENST00000412585	NM_005514.6	338																																																																																
DAXX	1616	MSKCC	GRCh37	6	33286806	33286806	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1443274655		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			791	42	458	0	ENST00000374542.5:c.2131del	p.His711IlefsTer55	p.H711Ifs*55	ENST00000374542	NM_001141970.1	711	Cat/at																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287794	33287794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			819	62	459	0	ENST00000374542.5:c.1459G>A	p.Ala487Thr	p.A487T	ENST00000374542	NM_001141970.1	487	Gca/Aca																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790818	89790819	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1350762602		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	162	427	0	ENST00000336032.3:c.211dup	p.Gln71ProfsTer137	p.Q71Pfs*137	ENST00000336032	NM_006813.2	69	acc/aCcc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120873	94120873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	43	294	0	ENST00000369303.4:c.178G>T	p.Gly60Cys	p.G60C	ENST00000369303	NM_004440.3	60	Ggt/Tgt																																																																															
SESN1	27244	MSKCC	GRCh37	6	109319826	109319826	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	70	347	0	ENST00000436639.2:c.862G>T	p.Gly288Cys	p.G288C	ENST00000436639	NM_014454.2	288	Ggt/Tgt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004238	150004239	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	42	272	0	ENST00000253339.5:c.1986dup	p.Gln663ThrfsTer5	p.Q663Tfs*5	ENST00000253339		662	-/A																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	149	401	0	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729342	41729342	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	59	341	0	ENST00000242208.4:c.1187T>G	p.Leu396Arg	p.L396R	ENST00000242208	NM_002192.2	396	cTg/cGg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450244	50450244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	116	337	0	ENST00000331340.3:c.428G>A	p.Arg143Gln	p.R143Q	ENST00000331340	NM_006060.4	143	cGg/cAg																																																																															
SMO	6608	MSKCC	GRCh37	7	128852017	128852018	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	41	403	0	ENST00000249373.3:c.2094dup	p.Ser699GlnfsTer118	p.S699Qfs*118	ENST00000249373	NM_005631.4	697	gcc/gCcc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	58	388	1	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346219	152346220	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs764640893		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	49	392	3	ENST00000359321.1:c.350dup	p.Leu117PhefsTer6	p.L117Ffs*6	ENST00000359321	NM_005431.1	117	ttg/ttTg																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23539108	23539108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	194	398	0	ENST00000380871.4:c.331G>T	p.Gly111Cys	p.G111C	ENST00000380871	NM_006167.3	111	Ggc/Tgc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5022127	5022127	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	47	347	0	ENST00000381652.3:c.140T>C	p.Leu47Pro	p.L47P	ENST00000381652	NM_004972.3	47	cTt/cCt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484302	8484302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	63	309	0	ENST00000356435.5:c.3230C>A	p.Pro1077His	p.P1077H	ENST00000356435		1077	cCt/cAt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499688	8499688	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774424685		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	140	380	0	ENST00000356435.5:c.2281G>A	p.Gly761Ser	p.G761S	ENST00000356435		761	Ggc/Agc																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020769	37020769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			763	72	398	2	ENST00000358127.4:c.76del	p.Val26PhefsTer3	p.V26Ffs*3	ENST00000358127	NM_001280556.1	26	Gtt/tt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570280	87570280	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	66	390	0	ENST00000277120.3:c.2020C>A	p.Gln674Lys	p.Q674K	ENST00000277120		674	Cag/Aag																																																																															
SYK	6850	MSKCC	GRCh37	9	93607789	93607789	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	125	330	0	ENST00000375746.1:c.496del	p.Met166CysfsTer18	p.M166Cfs*18	ENST00000375746	NM_001174167.1	164	gAa/ga																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300039	137300040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755912201		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	42	341	0	ENST00000481739.1:c.331dup	p.Leu111ProfsTer70	p.L111Pfs*70	ENST00000481739	NM_002957.4	108	-/C																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391869	139391869	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780963597		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	69	474	0	ENST00000277541.6:c.6322G>A	p.Asp2108Asn	p.D2108N	ENST00000277541	NM_017617.3	2108	Gac/Aac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391877	139391877	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs373091110		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	50	482	0	ENST00000277541.6:c.6314T>C	p.Met2105Thr	p.M2105T	ENST00000277541	NM_017617.3	2105	aTg/aCg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44948986	44948986	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	121	299	0	ENST00000377967.4:c.3549-2A>G		p.X1183_splice	ENST00000377967	NM_021140.2	1183																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53250047	53250047	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			762	56	382	2	ENST00000375401.3:c.202del	p.Arg68GlufsTer5	p.R68Efs*5	ENST00000375401	NM_004187.3	68	Cga/ga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412647	63412648	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	110	438	0	ENST00000330258.3:c.519dup	p.Ser174Ter	p.S174*	ENST00000330258	NM_152424.3	173	-/T																																																																															
ATRX	546	MSKCC	GRCh37	X	76938499	76938501	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	93	304	0	ENST00000373344.5:c.2247_2249del	p.Ser750del	p.S750del	ENST00000373344	NM_000489.3	749	tcTTCa/tca																																																																															
ATRX	546	MSKCC	GRCh37	X	76938593	76938594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	21	334	0	ENST00000373344.5:c.2154dup	p.Ser719IlefsTer2	p.S719Ifs*2	ENST00000373344	NM_000489.3	718	-/A																																																																															
STAG2	10735	MSKCC	GRCh37	X	123195681	123195681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	96	283	0	ENST00000218089.9:c.1595C>T	p.Ala532Val	p.A532V	ENST00000218089	NM_001042749.1	532	gCg/gTg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432116	121432116	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	67	416	0	ENST00000257555.6:c.863G>C	p.Gly288Ala	p.G288A	ENST00000257555		288	gGg/gCg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376247	15376248	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs780128218		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	34	269	1	ENST00000263377.2:c.766dup	p.Gln256ProfsTer46	p.Q256Pfs*46	ENST00000263377	NM_058243.2	256	cag/cCag																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9776497	9776497	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	58	301	0	ENST00000377346.4:c.601-1G>T		p.X201_splice	ENST00000377346	NM_005026.3	201																																																																																
MTOR	2475	MSKCC	GRCh37	1	11288901	11288901	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1156935323		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	81	403	0	ENST00000361445.4:c.2854A>G	p.Met952Val	p.M952V	ENST00000361445	NM_004958.3	952	Atg/Gtg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202819	16202819	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769249893		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	198	357	0	ENST00000375759.3:c.527G>A	p.Arg176Gln	p.R176Q	ENST00000375759	NM_015001.2	176	cGg/cAg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257609	16257609	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			722	95	436	0	ENST00000375759.3:c.4874A>G	p.Glu1625Gly	p.E1625G	ENST00000375759	NM_015001.2	1625	gAg/gGg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260226	16260226	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			763	99	466	0	ENST00000375759.3:c.7491G>T	p.Lys2497Asn	p.K2497N	ENST00000375759	NM_015001.2	2497	aaG/aaT																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262054	16262054	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	69	426	0	ENST00000375759.3:c.9319A>G	p.Ser3107Gly	p.S3107G	ENST00000375759	NM_015001.2	3107	Agt/Ggt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16264112	16264112	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			769	92	451	0	ENST00000375759.3:c.10481G>T	p.Arg3494Ile	p.R3494I	ENST00000375759	NM_015001.2	3494	aGa/aTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092947	27092947	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	81	376	0	ENST00000324856.7:c.2879-1G>T		p.X960_splice	ENST00000324856	NM_006015.4	960																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27100994	27100994	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1310926680		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	29	367	0	ENST00000324856.7:c.4276G>A	p.Asp1426Asn	p.D1426N	ENST00000324856	NM_006015.4	1426	Gat/Aat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105947	27105947	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			715	99	430	0	ENST00000324856.7:c.5558A>G	p.Glu1853Gly	p.E1853G	ENST00000324856	NM_006015.4	1853	gAg/gGg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107199	27107199	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	73	412	0	ENST00000324856.7:c.6810G>T	p.Leu2270Phe	p.L2270F	ENST00000324856	NM_006015.4	2270	ttG/ttT																																																																															
SESN2	83667	MSKCC	GRCh37	1	28600560	28600560	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	63	348	0	ENST00000253063.3:c.911T>C	p.Leu304Pro	p.L304P	ENST00000253063	NM_031459.4	304	cTg/cCg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932155	36932155	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	76	500	0	ENST00000361632.4:c.2314T>A	p.Ser772Thr	p.S772T	ENST00000361632		772	Tcc/Acc																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363228	40363228	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			729	41	404	1	ENST00000397332.2:c.1001T>C	p.Leu334Pro	p.L334P	ENST00000397332	NM_001033082.2	334	cTg/cCg																																																																															
MPL	4352	MSKCC	GRCh37	1	43818238	43818238	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	215	476	0	ENST00000372470.3:c.1703T>G	p.Leu568Arg	p.L568R	ENST00000372470	NM_005373.2	568	cTt/cGt																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45799218	45799218	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	70	379	0	ENST00000372115.3:c.173C>A	p.Pro58Gln	p.P58Q	ENST00000372115	NM_001048171.1	58	cCg/cAg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65323389	65323389	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1353735131		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	59	438	0	ENST00000342505.4:c.1408A>G	p.Thr470Ala	p.T470A	ENST00000342505	NM_002227.2	470	Acc/Gcc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400850	72400850	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	64	321	0	ENST00000357731.5:c.321T>A	p.Asn107Lys	p.N107K	ENST00000357731	NM_173808.2	107	aaT/aaA																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165903	118165903	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	108	429	0	ENST00000369448.3:c.413A>G	p.Tyr138Cys	p.Y138C	ENST00000369448	NM_017709.3	138	tAt/tGt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120471611	120471611	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs782682302		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	37	354	0	ENST00000256646.2:c.3880A>G	p.Ser1294Gly	p.S1294G	ENST00000256646	NM_024408.3	1294	Agt/Ggt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120491148	120491148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	84	345	0	ENST00000256646.2:c.2641C>T	p.Pro881Ser	p.P881S	ENST00000256646	NM_024408.3	881	Ccc/Tcc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120491161	120491161	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	179	366	0	ENST00000256646.2:c.2628G>T	p.Glu876Asp	p.E876D	ENST00000256646	NM_024408.3	876	gaG/gaT																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150933434	150933434	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	77	494	0	ENST00000271640.5:c.2896G>T	p.Gly966Cys	p.G966C	ENST00000271640	NM_001145415.1	966	Ggt/Tgt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156836709	156836709	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			743	205	553	0	ENST00000524377.1:c.367T>C	p.Ser123Pro	p.S123P	ENST00000524377	NM_002529.3	123	Tcc/Ccc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838417	156838417	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	72	419	1	ENST00000524377.1:c.695T>C	p.Leu232Pro	p.L232P	ENST00000524377	NM_002529.3	232	cTg/cCg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729600	162729600	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	65	383	0	ENST00000367921.3:c.686T>C	p.Leu229Pro	p.L229P	ENST00000367921	NM_006182.2	229	cTa/cCa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729634	162729634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	59	394	0	ENST00000367921.3:c.720C>A	p.Asp240Glu	p.D240E	ENST00000367921	NM_006182.2	240	gaC/gaA																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175916344	175916344	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	32	224	1	ENST00000367669.3:c.2165A>G	p.Gln722Arg	p.Q722R	ENST00000367669	NM_022457.5	722	cAg/cGg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176153784	176153784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	33	245	0	ENST00000367669.3:c.452G>A	p.Cys151Tyr	p.C151Y	ENST00000367669	NM_022457.5	151	tGt/tAt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193181543	193181543	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	44	309	0	ENST00000367435.3:c.1090A>T	p.Ile364Phe	p.I364F	ENST00000367435	NM_024529.4	364	Att/Ttt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982308	201982308	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	181	462	0	ENST00000359651.3:c.689-2A>G		p.X230_splice	ENST00000359651		230																																																																																
ELF3	1999	MSKCC	GRCh37	1	201982337	201982337	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			793	94	461	0	ENST00000359651.3:c.716A>G	p.Asp239Gly	p.D239G	ENST00000359651		239	gAt/gGt																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230561382	230561382	+	5_prime_UTR_variant	5'UTR	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	82	597	0	ENST00000391860.1:c.-53T>C		p.*18*	ENST00000391860	NM_001258311.1																																																																																	
SPRTN	83932	MSKCC	GRCh37	1	231487212	231487212	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	45	366	0	ENST00000295050.7:c.613T>C	p.Cys205Arg	p.C205R	ENST00000295050	NM_032018.5	205	Tgt/Cgt																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488926	231488926	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1482865068		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	43	362	0	ENST00000295050.7:c.1289G>A	p.Ser430Asn	p.S430N	ENST00000295050	NM_032018.5	430	aGt/aAt																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246493826	246493826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	37	241	0	ENST00000388985.4:c.350C>A	p.Pro117His	p.P117H	ENST00000388985		117	cCt/cAt																																																																															
TET1	80312	MSKCC	GRCh37	10	70405686	70405686	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	59	367	0	ENST00000373644.4:c.3200A>G	p.Asp1067Gly	p.D1067G	ENST00000373644	NM_030625.2	1067	gAt/gGt																																																																															
TET1	80312	MSKCC	GRCh37	10	70406276	70406276	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	55	387	0	ENST00000373644.4:c.3790A>G	p.Ser1264Gly	p.S1264G	ENST00000373644	NM_030625.2	1264	Agc/Ggc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88672020	88672020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	25	198	0	ENST00000372037.3:c.554G>A	p.Ser185Asn	p.S185N	ENST00000372037	NM_004329.2	185	aGc/aAc																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112771513	112771514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	121	342	2	ENST00000369452.4:c.1692dup	p.Pro565AlafsTer21	p.P565Afs*21	ENST00000369452	NM_007373.3	562	-/G																																																																															
CTR9	9646	MSKCC	GRCh37	11	10781737	10781737	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	65	262	0	ENST00000361367.2:c.610A>G	p.Met204Val	p.M204V	ENST00000361367	NM_014633.3	204	Atg/Gtg																																																																															
CTR9	9646	MSKCC	GRCh37	11	10785973	10785973	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	64	386	0	ENST00000361367.2:c.1403G>T	p.Gly468Val	p.G468V	ENST00000361367	NM_014633.3	468	gGg/gTg																																																																															
CTR9	9646	MSKCC	GRCh37	11	10786099	10786099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	34	389	0	ENST00000361367.2:c.1418A>G	p.Tyr473Cys	p.Y473C	ENST00000361367	NM_014633.3	473	tAt/tGt																																																																															
APLNR	187	MSKCC	GRCh37	11	57004462	57004462	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	T	T	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	36	389	0	ENST00000257254.3:c.17A>T	p.Asp6Val	p.D6V	ENST00000257254		6	gAt/gTt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137175	64137175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	64	363	0	ENST00000334205.4:c.1607T>C	p.Ile536Thr	p.I536T	ENST00000334205	NM_003942.2	536	aTc/aCc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64571966	64571966	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	92	418	0	ENST00000337652.1:c.1688T>C	p.Met563Thr	p.M563T	ENST00000337652	NM_130803.2	563	aTg/aCg																																																																															
CCND1	595	MSKCC	GRCh37	11	69458616	69458616	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	68	306	0	ENST00000227507.2:c.431T>G	p.Leu144Arg	p.L144R	ENST00000227507	NM_053056.2	144	cTg/cGg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939486	71939486	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			725	53	534	0	ENST00000298229.2:c.341T>G	p.Leu114Arg	p.L114R	ENST00000298229	NM_001567.3	114	cTt/cGt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948293	71948293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			722	88	569	0	ENST00000298229.2:c.3005C>A	p.Pro1002His	p.P1002H	ENST00000298229	NM_001567.3	1002	cCc/cAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948377	71948377	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs941335068		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	193	532	0	ENST00000298229.2:c.3089G>A	p.Arg1030Gln	p.R1030Q	ENST00000298229	NM_001567.3	1030	cGg/cAg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77054934	77054934	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs769471788		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	29	347	0	ENST00000356341.3:c.928G>T	p.Glu310Ter	p.E310*	ENST00000356341	NM_002576.4	310	Gag/Tag																																																																															
PGR	5241	MSKCC	GRCh37	11	100920774	100920774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	34	284	0	ENST00000325455.5:c.2374T>C	p.Ser792Pro	p.S792P	ENST00000325455	NM_001202474.3	792	Tca/Cca																																																																															
PGR	5241	MSKCC	GRCh37	11	100962497	100962497	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	101	230	0	ENST00000325455.5:c.1900C>A	p.Leu634Ile	p.L634I	ENST00000325455	NM_001202474.3	634	Ctt/Att																																																																															
PGR	5241	MSKCC	GRCh37	11	100999336	100999336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	45	426	1	ENST00000325455.5:c.466G>A	p.Ala156Thr	p.A156T	ENST00000325455	NM_001202474.3	156	Gcc/Acc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195263	102195263	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	70	317	0	ENST00000263464.3:c.23T>C	p.Ile8Thr	p.I8T	ENST00000263464	NM_001165.4	8	aTa/aCa																																																																															
BIRC3	330	MSKCC	GRCh37	11	102206786	102206786	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145025961		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	154	282	0	ENST00000263464.3:c.1414G>A	p.Gly472Arg	p.G472R	ENST00000263464	NM_001165.4	472	Gga/Aga																																																																															
ATM	472	MSKCC	GRCh37	11	108196180	108196180	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	116	326	0	ENST00000278616.4:c.6716T>C	p.Met2239Thr	p.M2239T	ENST00000278616	NM_000051.3	2239	aTg/aCg																																																																															
ATM	472	MSKCC	GRCh37	11	108202200	108202201	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	69	238	0	ENST00000278616.4:c.7550dup	p.Leu2517PhefsTer10	p.L2517Ffs*10	ENST00000278616	NM_000051.3	2515	-/T																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343916	118343916	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			741	59	372	0	ENST00000534358.1:c.2042C>A	p.Pro681Gln	p.P681Q	ENST00000534358	NM_005933.3	681	cCa/cAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118362630	118362630	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	76	313	0	ENST00000534358.1:c.4991T>C	p.Leu1664Pro	p.L1664P	ENST00000534358	NM_005933.3	1664	cTa/cCa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118365098	118365098	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	25	309	0	ENST00000534358.1:c.5274G>T	p.Lys1758Asn	p.K1758N	ENST00000534358	NM_005933.3	1758	aaG/aaT																																																																															
CBL	867	MSKCC	GRCh37	11	119155897	119155897	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			798	85	447	0	ENST00000264033.4:c.1564-2A>G		p.X522_splice	ENST00000264033	NM_005188.3	522																																																																																
KDM5A	5927	MSKCC	GRCh37	12	465645	465645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	31	306	0	ENST00000399788.2:c.731C>T	p.Ala244Val	p.A244V	ENST00000399788	NM_001042603.1	244	gCt/gTt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18800814	18800814	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1225346057		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	19	219	0	ENST00000266497.5:c.4190T>C	p.Val1397Ala	p.V1397A	ENST00000266497		1397	gTa/gCa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21626532	21626532	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	30	322	0	ENST00000421138.2:c.1400A>G	p.Asn467Ser	p.N467S	ENST00000421138		467	aAc/aGc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21630781	21630781	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	33	313	0	ENST00000421138.2:c.823T>G	p.Phe275Val	p.F275V	ENST00000421138		275	Ttt/Gtt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244666	46244666	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	222	481	0	ENST00000334344.6:c.2760G>C	p.Gln920His	p.Q920H	ENST00000334344	NM_152641.2	920	caG/caC																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245274	46245274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	70	438	0	ENST00000334344.6:c.3368G>T	p.Gly1123Val	p.G1123V	ENST00000334344	NM_152641.2	1123	gGg/gTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46254591	46254591	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	51	263	0	ENST00000334344.6:c.4781C>A	p.Pro1594His	p.P1594H	ENST00000334344	NM_152641.2	1594	cCt/cAt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46254701	46254701	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	138	285	0	ENST00000334344.6:c.4891A>T	p.Asn1631Tyr	p.N1631Y	ENST00000334344	NM_152641.2	1631	Aac/Tac																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287260	46287260	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	55	421	0	ENST00000334344.6:c.5205T>A	p.Asn1735Lys	p.N1735K	ENST00000334344	NM_152641.2	1735	aaT/aaA																																																																															
ARID2	196528	MSKCC	GRCh37	12	46298796	46298796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	41	278	0	ENST00000334344.6:c.5443C>A	p.Leu1815Ile	p.L1815I	ENST00000334344	NM_152641.2	1815	Ctt/Att																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420813	49420813	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	76	452	0	ENST00000301067.7:c.14936T>C	p.Leu4979Pro	p.L4979P	ENST00000301067	NM_003482.3	4979	cTc/cCc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445148	49445148	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	61	476	0	ENST00000301067.7:c.2318A>G	p.Gln773Arg	p.Q773R	ENST00000301067	NM_003482.3	773	cAg/cGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448433	49448433	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	47	423	0	ENST00000301067.7:c.278G>T	p.Arg93Leu	p.R93L	ENST00000301067	NM_003482.3	93	cGg/cTg																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480032	50480032	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	140	426	0	ENST00000394963.4:c.266C>A	p.Pro89His	p.P89H	ENST00000394963	NM_003076.4	89	cCt/cAt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861156	57861156	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			737	86	369	0	ENST00000228682.2:c.953T>C	p.Leu318Pro	p.L318P	ENST00000228682	NM_005269.2	318	cTg/cCg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864570	57864570	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	86	421	0	ENST00000228682.2:c.2047T>G	p.Ser683Ala	p.S683A	ENST00000228682	NM_005269.2	683	Tct/Gct																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145045	58145045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			732	83	435	1	ENST00000257904.6:c.299T>C	p.Leu100Pro	p.L100P	ENST00000257904	NM_000075.3	100	cTa/cCa																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811604	102811605	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	38	430	1	ENST00000307046.8:c.579dup	p.Gly194ArgfsTer37	p.G194Rfs*37	ENST00000307046	NM_001111285.1	193	-/A																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112915782	112915782	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	92	349	0	ENST00000351677.2:c.1055T>C	p.Val352Ala	p.V352A	ENST00000351677	NM_002834.3	352	gTg/gCg																																																																															
MSI1	4440	MSKCC	GRCh37	12	120789173	120789173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	70	354	0	ENST00000257552.2:c.764G>T	p.Ser255Ile	p.S255I	ENST00000257552	NM_002442.3	255	aGc/aTc																																																																															
SETD8	387893	MSKCC	GRCh37	12	123889489	123889489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	15	123	0	ENST00000330479.4:c.716G>A	p.Gly239Asp	p.G239D	ENST00000330479	NM_020382.3	239	gGt/gAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133202815	133202815	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs750313372		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	85	424	0	ENST00000320574.5:c.6419A>G	p.Glu2140Gly	p.E2140G	ENST00000320574	NM_006231.2	2140	gAg/gGg																																																																															
POLE	5426	MSKCC	GRCh37	12	133209038	133209038	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	57	440	0	ENST00000320574.5:c.6193A>G	p.Thr2065Ala	p.T2065A	ENST00000320574	NM_006231.2	2065	Acc/Gcc																																																																															
POLE	5426	MSKCC	GRCh37	12	133238266	133238266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	136	299	0	ENST00000320574.5:c.2711G>A	p.Gly904Asp	p.G904D	ENST00000320574	NM_006231.2	904	gGc/gAc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562473	21562473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	35	372	0	ENST00000382592.4:c.1446G>T	p.Glu482Asp	p.E482D	ENST00000382592	NM_014572.2	482	gaG/gaT																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562815	21562815	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs12868620		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	117	417	0	ENST00000382592.4:c.1104G>T	p.Gln368His	p.Q368H	ENST00000382592	NM_014572.2	368	caG/caT																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877346	28877347	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			729	67	353	0	ENST00000282397.4:c.3974dup	p.Asp1326ArgfsTer23	p.D1326Rfs*23	ENST00000282397	NM_002019.4	1325	cca/ccCa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28896419	28896419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	49	329	0	ENST00000282397.4:c.3031G>T	p.Glu1011Ter	p.E1011*	ENST00000282397	NM_002019.4	1011	Gag/Tag																																																																															
FLT1	2321	MSKCC	GRCh37	13	28979994	28979994	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	29	272	0	ENST00000282397.4:c.1474C>A	p.Leu492Met	p.L492M	ENST00000282397	NM_002019.4	492	Ctg/Atg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900396	32900396	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	39	297	0	ENST00000380152.3:c.495del	p.His166IlefsTer6	p.H166Ifs*6	ENST00000380152		165	Ttt/tt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911680	32911680	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs775030825		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	40	315	0	ENST00000380152.3:c.3188A>C	p.Gln1063Pro	p.Q1063P	ENST00000380152		1063	cAg/cCg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929221	32929221	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	65	358	0	ENST00000380152.3:c.7234del	p.Thr2412LeufsTer55	p.T2412Lfs*55	ENST00000380152		2411	Aaa/aa																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240178	41240178	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	28	309	0	ENST00000379561.5:c.172C>A	p.Leu58Met	p.L58M	ENST00000379561	NM_002015.3	58	Ctg/Atg																																																																															
RB1	5925	MSKCC	GRCh37	13	49039366	49039366	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	73	360	0	ENST00000267163.4:c.2351A>G	p.His784Arg	p.H784R	ENST00000267163	NM_000321.2	784	cAc/cGc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346334	73346334	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs903816315		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	38	274	0	ENST00000377767.4:c.1466C>T	p.Ala489Val	p.A489V	ENST00000377767	NM_014953.3	489	gCt/gTt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103520496	103520496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	37	247	0	ENST00000355739.4:c.2567A>G	p.Tyr856Cys	p.Y856C	ENST00000355739	NM_000123.3	856	tAt/tGt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437441	110437441	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	53	356	0	ENST00000375856.3:c.960del	p.Gly321AlafsTer70	p.G321Afs*70	ENST00000375856	NM_003749.2	320	ccC/cc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30194832	30194833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	37	311	0	ENST00000331968.5:c.312dup	p.Arg105SerfsTer3	p.R105Sfs*3	ENST00000331968	NM_002742.2	104	-/T																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396453	30396453	+	splice_donor_variant	Splice_Site	SNP	A	A	G	rs369702363		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	99	292	0	ENST00000331968.5:c.264+2T>C		p.X88_splice	ENST00000331968	NM_002742.2	88																																																																																
NKX2-1	7080	MSKCC	GRCh37	14	36988192	36988192	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1457291567		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	63	342	0	ENST00000354822.5:c.461C>T	p.Ala154Val	p.A154V	ENST00000354822	NM_001079668.2	154	gCc/gTc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95556854	95556854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	58	206	0	ENST00000343455.3:c.5750C>A	p.Pro1917His	p.P1917H	ENST00000343455	NM_177438.2	1917	cCt/cAt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562550	95562550	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			735	44	416	0	ENST00000343455.3:c.4707C>A	p.Cys1569Ter	p.C1569*	ENST00000343455	NM_177438.2	1569	tgC/tgA																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562617	95562617	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			714	49	419	0	ENST00000343455.3:c.4640A>T	p.Asp1547Val	p.D1547V	ENST00000343455	NM_177438.2	1547	gAc/gTc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95596456	95596456	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	36	311	0	ENST00000343455.3:c.512T>G	p.Leu171Arg	p.L171R	ENST00000343455	NM_177438.2	171	cTt/cGt																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38641698	38641698	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	36	289	0	ENST00000299084.4:c.658T>C	p.Cys220Arg	p.C220R	ENST00000299084	NM_152594.2	220	Tgt/Cgt																																																																															
MGA	23269	MSKCC	GRCh37	15	41961894	41961894	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	68	378	0	ENST00000219905.7:c.802C>A	p.Gln268Lys	p.Q268K	ENST00000219905	NM_001164273.1	268	Cag/Aag																																																																															
MGA	23269	MSKCC	GRCh37	15	42028609	42028609	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775830123		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	70	399	0	ENST00000219905.7:c.4147C>T	p.Arg1383Trp	p.R1383W	ENST00000219905	NM_001164273.1	1383	Cgg/Tgg																																																																															
MGA	23269	MSKCC	GRCh37	15	42058593	42058593	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	58	440	1	ENST00000219905.7:c.8313G>T	p.Lys2771Asn	p.K2771N	ENST00000219905	NM_001164273.1	2771	aaG/aaT																																																																															
USP8	9101	MSKCC	GRCh37	15	50741633	50741633	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	46	251	0	ENST00000307179.4:c.291del	p.Ala98LeufsTer14	p.A98Lfs*14	ENST00000307179		96	Aaa/aa																																																																															
USP8	9101	MSKCC	GRCh37	15	50741663	50741663	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	28	242	0	ENST00000307179.4:c.316T>C	p.Ser106Pro	p.S106P	ENST00000307179		106	Tct/Cct																																																																															
BLM	641	MSKCC	GRCh37	15	91293088	91293088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	62	399	0	ENST00000355112.3:c.590A>G	p.Gln197Arg	p.Q197R	ENST00000355112	NM_000057.2	197	cAg/cGg																																																																															
BLM	641	MSKCC	GRCh37	15	91295037	91295039	+	inframe_deletion	In_Frame_Del	DEL	AAT	AAT	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	24	270	0	ENST00000355112.3:c.820_822del	p.Asn274del	p.N274del	ENST00000355112	NM_000057.2	274	AAT/-																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99478051	99478051	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	46	291	0	ENST00000268035.6:c.2957-2A>G		p.X986_splice	ENST00000268035	NM_000875.3	986																																																																																
TSC2	7249	MSKCC	GRCh37	16	2137894	2137894	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	61	417	0	ENST00000219476.3:c.5020A>G	p.Thr1674Ala	p.T1674A	ENST00000219476	NM_000548.3	1674	Acc/Gcc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225398	2225398	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748345908		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	85	416	0	ENST00000326181.6:c.1483G>A	p.Gly495Ser	p.G495S	ENST00000326181	NM_032271.2	495	Ggc/Agc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639450	3639450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	195	504	0	ENST00000294008.3:c.4189G>A	p.Asp1397Asn	p.D1397N	ENST00000294008	NM_032444.2	1397	Gac/Aac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857286	9857286	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	93	423	0	ENST00000330684.3:c.4115G>T	p.Arg1372Met	p.R1372M	ENST00000330684	NM_001134407.1	1372	aGg/aTg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813620	50813620	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	62	333	0	ENST00000398568.2:c.1174T>C	p.Phe392Leu	p.F392L	ENST00000398568	NM_001042412.1	392	Ttt/Ctt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644738	67644738	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	49	461	0	ENST00000264010.4:c.3G>T	p.Met1?	p.M1?	ENST00000264010	NM_006565.3	1	atG/atT																																																																															
CTCF	10664	MSKCC	GRCh37	16	67662457	67662457	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	58	360	0	ENST00000264010.4:c.1701+2T>C		p.X567_splice	ENST00000264010	NM_006565.3	567																																																																																
CDH1	999	MSKCC	GRCh37	16	68847271	68847271	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	63	346	0	ENST00000261769.5:c.1193T>C	p.Val398Ala	p.V398A	ENST00000261769	NM_004360.3	398	gTg/gCg																																																																															
CDH1	999	MSKCC	GRCh37	16	68853220	68853220	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs144519845		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	170	324	0	ENST00000261769.5:c.1603A>G	p.Ile535Val	p.I535V	ENST00000261769	NM_004360.3	535	Att/Gtt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829148	72829148	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	179	493	0	ENST00000268489.5:c.7433C>A	p.Pro2478His	p.P2478H	ENST00000268489	NM_006885.3	2478	cCt/cAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923840	72923840	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	54	323	0	ENST00000268489.5:c.3238G>T	p.Gly1080Cys	p.G1080C	ENST00000268489	NM_006885.3	1080	Ggt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993467	72993467	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs766294787		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	88	478	0	ENST00000268489.5:c.578A>G	p.Gln193Arg	p.Q193R	ENST00000268489	NM_006885.3	193	cAg/cGg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81934230	81934230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	101	331	0	ENST00000359376.3:c.1207C>A	p.Leu403Met	p.L403M	ENST00000359376	NM_002661.3	403	Ctg/Atg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350791	89350791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	98	384	0	ENST00000301030.4:c.2159G>T	p.Arg720Ile	p.R720I	ENST00000301030	NM_001256183.1	720	aGa/aTa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89831324	89831324	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	200	355	0	ENST00000389301.3:c.2752G>T	p.Glu918Ter	p.E918*	ENST00000389301	NM_000135.2	918	Gag/Tag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984768	11984768	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	32	206	0	ENST00000353533.5:c.314T>C	p.Leu105Pro	p.L105P	ENST00000353533	NM_003010.3	105	cTt/cCt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15964837	15964837	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	73	382	0	ENST00000268712.3:c.5759G>T	p.Arg1920Met	p.R1920M	ENST00000268712	NM_006311.3	1920	aGg/aTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15973523	15973523	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	90	380	0	ENST00000268712.3:c.4469A>C	p.Asn1490Thr	p.N1490T	ENST00000268712	NM_006311.3	1490	aAc/aCc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16022752	16022752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	49	306	0	ENST00000268712.3:c.1900G>A	p.Glu634Lys	p.E634K	ENST00000268712	NM_006311.3	634	Gaa/Aaa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16068291	16068291	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	19	125	0	ENST00000268712.3:c.618+2T>C		p.X206_splice	ENST00000268712	NM_006311.3	206																																																																																
FLCN	201163	MSKCC	GRCh37	17	17120486	17120486	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866720887		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	77	323	0	ENST00000285071.4:c.1073C>T	p.Ala358Val	p.A358V	ENST00000285071	NM_144997.5	358	gCc/gTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29557402	29557402	+	splice_donor_variant	Splice_Site	SNP	T	T	C	rs876658997		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	22	254	0	ENST00000358273.4:c.3113+2T>C		p.X1038_splice	ENST00000358273	NM_001042492.2	1038																																																																																
SUZ12	23512	MSKCC	GRCh37	17	30322681	30322681	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	37	301	0	ENST00000322652.5:c.1694A>G	p.Tyr565Cys	p.Y565C	ENST00000322652	NM_015355.2	565	tAt/tGt																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690805	33690805	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	55	385	0	ENST00000308377.4:c.22del	p.Leu8TrpfsTer14	p.L8Wfs*14	ENST00000308377	NM_152270.3	8	Ctg/tg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37871543	37871543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	91	390	0	ENST00000269571.5:c.1153C>A	p.Pro385Thr	p.P385T	ENST00000269571		385	Cca/Aca																																																																															
RARA	5914	MSKCC	GRCh37	17	38510557	38510557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	69	283	0	ENST00000254066.5:c.811C>A	p.Leu271Met	p.L271M	ENST00000254066	NM_000964.3	271	Ctg/Atg																																																																															
RARA	5914	MSKCC	GRCh37	17	38510758	38510758	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	21	251	0	ENST00000254066.5:c.1012G>T	p.Asp338Tyr	p.D338Y	ENST00000254066	NM_000964.3	338	Gac/Tac																																																																															
EZH1	2145	MSKCC	GRCh37	17	40879742	40879742	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	65	261	0	ENST00000428826.2:c.157del	p.Thr53ProfsTer19	p.T53Pfs*19	ENST00000428826		53	Acc/cc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243568	41243568	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730881444		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	74	378	0	ENST00000357654.3:c.3980A>G	p.Gln1327Arg	p.Q1327R	ENST00000357654	NM_007294.3	1327	cAg/cGg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243869	41243869	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	72	402	0	ENST00000357654.3:c.3679C>A	p.Gln1227Lys	p.Q1227K	ENST00000357654	NM_007294.3	1227	Caa/Aaa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41267774	41267774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	51	272	0	ENST00000357654.3:c.103G>A	p.Val35Ile	p.V35I	ENST00000357654	NM_007294.3	35	Gtc/Atc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59924529	59924529	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	39	274	0	ENST00000259008.2:c.560T>C	p.Val187Ala	p.V187A	ENST00000259008	NM_032043.2	187	gTt/gCt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554191	63554191	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	104	461	0	ENST00000307078.5:c.548A>G	p.Glu183Gly	p.E183G	ENST00000307078	NM_004655.3	183	gAg/gGg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78914307	78914307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	74	343	0	ENST00000306801.3:c.2931G>T	p.Glu977Asp	p.E977D	ENST00000306801	NM_020761.2	977	gaG/gaT																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78936373	78936373	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1386816509		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	93	393	0	ENST00000306801.3:c.3805G>A	p.Ala1269Thr	p.A1269T	ENST00000306801	NM_020761.2	1269	Gca/Aca																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39661093	39661093	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	21	178	1	ENST00000262039.4:c.2656A>G	p.Arg886Gly	p.R886G	ENST00000262039	NM_002647.2	886	Aga/Gga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575203	48575203	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	62	238	0	ENST00000342988.3:c.397T>C	p.Tyr133His	p.Y133H	ENST00000342988	NM_005359.5	133	Tac/Cac																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2199917	2199917	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	35	291	0	ENST00000398665.3:c.686G>T	p.Arg229Met	p.R229M	ENST00000398665	NM_032482.2	229	aGg/aTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217029	2217029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	150	430	0	ENST00000398665.3:c.2484G>T	p.Gln828His	p.Q828H	ENST00000398665	NM_032482.2	828	caG/caT																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110292	3110292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	67	404	0	ENST00000078429.4:c.282G>A	p.Met94Ile	p.M94I	ENST00000078429	NM_002067.2	94	atG/atA																																																																															
GNA11	2767	MSKCC	GRCh37	19	3113329	3113329	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	40	354	2	ENST00000078429.4:c.323C>T	p.Ala108Val	p.A108V	ENST00000078429	NM_002067.2	108	gCc/gTc																																																																															
GNA11	2767	MSKCC	GRCh37	19	3119300	3119300	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	90	470	0	ENST00000078429.4:c.832C>A	p.Leu278Met	p.L278M	ENST00000078429	NM_002067.2	278	Ctg/Atg																																																																															
INSR	3643	MSKCC	GRCh37	19	7267611	7267611	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	87	378	0	ENST00000302850.5:c.397C>A	p.Leu133Ile	p.L133I	ENST00000302850	NM_000208.2	133	Ctc/Atc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10246829	10246829	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	86	427	0	ENST00000340748.4:c.4576A>C	p.Thr1526Pro	p.T1526P	ENST00000340748		1526	Acc/Ccc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250405	10250405	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	182	386	0	ENST00000340748.4:c.3847A>G	p.Thr1283Ala	p.T1283A	ENST00000340748		1283	Acc/Gcc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11032071	11032071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	50	456	0	ENST00000327064.4:c.1636C>T	p.His546Tyr	p.H546Y	ENST00000327064	NM_199141.1	546	Cac/Tac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11136120	11136120	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	149	362	0	ENST00000344626.4:c.3104T>C	p.Leu1035Pro	p.L1035P	ENST00000344626	NM_003072.3	1035	cTg/cCg																																																																															
CALR	811	MSKCC	GRCh37	19	13054445	13054445	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			790	75	503	0	ENST00000316448.5:c.1053+2T>G		p.X351_splice	ENST00000316448	NM_004343.3	351																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15271858	15271858	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	69	497	1	ENST00000263388.2:c.6581A>C	p.Gln2194Pro	p.Q2194P	ENST00000263388	NM_000435.2	2194	cAg/cCg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212218	36212218	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	61	344	0	ENST00000222270.7:c.1969G>T	p.Ala657Ser	p.A657S	ENST00000222270	NM_014727.1	657	Gcc/Tcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36215556	36215556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	70	289	0	ENST00000222270.7:c.3353C>A	p.Pro1118His	p.P1118H	ENST00000222270	NM_014727.1	1118	cCt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224759	36224759	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	41	403	0	ENST00000222270.7:c.7145G>T	p.Trp2382Leu	p.W2382L	ENST00000222270	NM_014727.1	2382	tGg/tTg																																																																															
AXL	558	MSKCC	GRCh37	19	41737179	41737179	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs752514954		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	82	392	1	ENST00000301178.4:c.763del	p.Leu255Ter	p.L255*	ENST00000301178	NM_021913.4	253	taC/ta																																																																															
ERF	2077	MSKCC	GRCh37	19	42752622	42752622	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	58	364	0	ENST00000222329.4:c.1642T>G	p.Ser548Ala	p.S548A	ENST00000222329	NM_006494.2	548	Tcc/Gcc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753579	42753579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	201	521	0	ENST00000222329.4:c.685C>T	p.Pro229Ser	p.P229S	ENST00000222329	NM_006494.2	229	Cct/Tct																																																																															
ERF	2077	MSKCC	GRCh37	19	42753846	42753846	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			746	51	508	0	ENST00000222329.4:c.418A>G	p.Ser140Gly	p.S140G	ENST00000222329	NM_006494.2	140	Agc/Ggc																																																																															
CIC	23152	MSKCC	GRCh37	19	42795025	42795025	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	34	431	0	ENST00000575354.2:c.2105A>C	p.Asn702Thr	p.N702T	ENST00000575354	NM_015125.3	702	aAt/aCt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905794	50905794	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	33	500	0	ENST00000440232.2:c.840+2T>C		p.X280_splice	ENST00000440232	NM_002691.3	280																																																																																
POLD1	5424	MSKCC	GRCh37	19	50906357	50906357	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	29	399	0	ENST00000440232.2:c.1018C>A	p.Leu340Met	p.L340M	ENST00000440232	NM_002691.3	340	Ctg/Atg																																																																															
ALK	238	MSKCC	GRCh37	2	29451842	29451843	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	20	270	0	ENST00000389048.3:c.2722dup	p.Gln908ProfsTer40	p.Q908Pfs*40	ENST00000389048	NM_004304.4	908	cag/cCag																																																																															
ALK	238	MSKCC	GRCh37	2	30143053	30143053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	36	539	0	ENST00000389048.3:c.473C>T	p.Pro158Leu	p.P158L	ENST00000389048	NM_004304.4	158	cCc/cTc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39278332	39278332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	98	284	0	ENST00000402219.2:c.817G>T	p.Gly273Cys	p.G273C	ENST00000402219	NM_005633.3	273	Ggc/Tgc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47643559	47643559	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753075410		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	42	240	0	ENST00000233146.2:c.1067T>C	p.Ile356Thr	p.I356T	ENST00000233146	NM_000251.2	356	aTa/aCa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48032826	48032826	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1114167688		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	56	282	0	ENST00000234420.5:c.3626T>C	p.Leu1209Pro	p.L1209P	ENST00000234420	NM_000179.2	1209	cTg/cCg																																																																															
REL	5966	MSKCC	GRCh37	2	61149120	61149120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	145	410	0	ENST00000295025.8:c.1310C>A	p.Pro437His	p.P437H	ENST00000295025	NM_002908.2	437	cCt/cAt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61711128	61711128	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	45	285	0	ENST00000401558.2:c.2621T>G	p.Val874Gly	p.V874G	ENST00000401558	NM_003400.3	874	gTt/gGt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99181155	99181155	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	72	370	0	ENST00000074304.5:c.2096A>G	p.Asp699Gly	p.D699G	ENST00000074304	NM_001134224.1	699	gAc/gGc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158594114	158594114	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	34	346	0	ENST00000263640.3:c.1459A>G	p.Thr487Ala	p.T487A	ENST00000263640	NM_001105.4	487	Aca/Gca																																																																															
PMS1	5378	MSKCC	GRCh37	2	190732614	190732614	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	41	282	0	ENST00000441310.2:c.2432C>A	p.Pro811His	p.P811H	ENST00000441310	NM_000534.4	811	cCt/cAt																																																																															
CASP8	841	MSKCC	GRCh37	2	202137667	202137667	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	33	321	0	ENST00000358485.4:c.772+2T>C		p.X258_splice	ENST00000358485	NM_001080125.1	258																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212295813	212295813	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	33	304	0	ENST00000342788.4:c.2500C>A	p.Leu834Met	p.L834M	ENST00000342788	NM_005235.2	834	Ctg/Atg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225400279	225400279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	26	281	0	ENST00000264414.4:c.344C>A	p.Ala115Asp	p.A115D	ENST00000264414	NM_003590.4	115	gCt/gAt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662602	227662602	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1295643078		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	80	423	0	ENST00000305123.5:c.853C>T	p.Arg285Cys	p.R285C	ENST00000305123	NM_005544.2	285	Cgc/Tgc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793210	242793210	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	26	342	0	ENST00000334409.5:c.867A>G	p.Ter289TrpextTer38	p.*289Wext*38	ENST00000334409	NM_005018.2	289	tgA/tgG																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538369	9538369	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	58	327	0	ENST00000353224.5:c.1629A>C	p.Glu543Asp	p.E543D	ENST00000353224	NM_177990.2	543	gaA/gaC																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546949	9546949	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	166	417	0	ENST00000353224.5:c.1073C>A	p.Pro358His	p.P358H	ENST00000353224	NM_177990.2	358	cCt/cAt																																																																															
SRC	6714	MSKCC	GRCh37	20	36031251	36031251	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	75	376	0	ENST00000358208.4:c.1370A>G	p.Glu457Gly	p.E457G	ENST00000358208		457	gAg/gGg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265048	46265048	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	71	480	1	ENST00000371998.3:c.1918T>C	p.Ser640Pro	p.S640P	ENST00000371998		640	Tcc/Ccc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46266504	46266504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	41	314	0	ENST00000371998.3:c.2489T>C	p.Val830Ala	p.V830A	ENST00000371998		830	gTg/gCg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231871	36231871	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			764	45	466	0	ENST00000300305.3:c.513A>C	p.Lys171Asn	p.K171N	ENST00000300305		171	aaA/aaC																																																																															
RUNX1	861	MSKCC	GRCh37	21	36421192	36421192	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			814	46	457	0	ENST00000300305.3:c.5C>A	p.Ala2Asp	p.A2D	ENST00000300305		2	gCt/gAt																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866441	42866441	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			843	60	447	0	ENST00000398585.3:c.191C>A	p.Pro64His	p.P64H	ENST00000398585	NM_001135099.1	64	cCc/cAc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29449608	29449608	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	48	258	3	ENST00000544604.2:c.2809T>C	p.Ter937ArgextTer39	p.*937Rext*39	ENST00000544604	NM_001206998.1	937	Tga/Cga																																																																															
NF2	4771	MSKCC	GRCh37	22	30077489	30077489	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	80	396	0	ENST00000338641.4:c.1636A>G	p.Ile546Val	p.I546V	ENST00000338641	NM_000268.3	546	Atc/Gtc																																																																															
RAC2	5880	MSKCC	GRCh37	22	37628844	37628844	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	113	243	0	ENST00000249071.6:c.222G>T	p.Gln74His	p.Q74H	ENST00000249071	NM_002872.4	74	caG/caT																																																																															
EP300	2033	MSKCC	GRCh37	22	41574455	41574455	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	67	428	0	ENST00000263253.7:c.6740A>C	p.Gln2247Pro	p.Q2247P	ENST00000263253	NM_001429.3	2247	cAg/cCg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30733039	30733039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	37	342	1	ENST00000359013.4:c.1727G>A	p.Ser576Asn	p.S576N	ENST00000359013	NM_001024847.2	576	aGc/aAc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37089150	37089151	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAT			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	150	382	0	ENST00000231790.2:c.1872_1873insAAT	p.Asp624_Tyr625insAsn	p.D624_Y625insN	ENST00000231790	NM_000249.3	624	-/AAT																																																																															
MYD88	4615	MSKCC	GRCh37	3	38181455	38181455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	154	372	0	ENST00000396334.3:c.468G>T	p.Glu156Asp	p.E156D	ENST00000396334	NM_002468.4	156	gaG/gaT																																																																															
MST1R	4486	MSKCC	GRCh37	3	49924936	49924936	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	40	409	0	ENST00000296474.3:c.4007T>C	p.Val1336Ala	p.V1336A	ENST00000296474	NM_002447.2	1336	gTa/gCa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439795	52439795	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	76	414	0	ENST00000460680.1:c.917A>G	p.Glu306Gly	p.E306G	ENST00000460680	NM_004656.3	306	gAg/gGg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643495	52643495	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	46	357	0	ENST00000394830.3:c.2401A>C	p.Ser801Arg	p.S801R	ENST00000394830	NM_018313.4	801	Agc/Cgc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026858	71026858	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	52	346	0	ENST00000318789.4:c.1364A>C	p.Asn455Thr	p.N455T	ENST00000318789	NM_032682.5	455	aAc/aCc																																																																															
RYBP	23429	MSKCC	GRCh37	3	72428504	72428504	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	84	352	1	ENST00000477973.2:c.498del	p.Lys167ArgfsTer41	p.K167Rfs*41	ENST00000477973	NM_012234.5	167	aAg/ag																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72866404	72866404	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	46	327	0	ENST00000325599.8:c.859C>A	p.Arg287Ser	p.R287S	ENST00000325599	NM_018130.2	287	Cgt/Agt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202708	128202708	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	38	473	0	ENST00000341105.2:c.1012A>G	p.Arg338Gly	p.R338G	ENST00000341105	NM_032638.4	338	Aga/Gga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134514502	134514502	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	38	263	0	ENST00000398015.3:c.29T>C	p.Leu10Pro	p.L10P	ENST00000398015	NM_004441.4	10	cTc/cCc																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182679012	182679012	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	74	236	0	ENST00000292782.4:c.520+2T>C		p.X174_splice	ENST00000292782	NM_020640.2	174																																																																																
BCL6	604	MSKCC	GRCh37	3	187449519	187449519	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	44	386	0	ENST00000232014.4:c.361T>C	p.Cys121Arg	p.C121R	ENST00000232014	NM_001130845.1	121	Tgc/Cgc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1805527	1805527	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	39	357	0	ENST00000260795.2:c.1039T>G	p.Phe347Val	p.F347V	ENST00000260795		347	Ttt/Gtt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1920175	1920175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			793	89	427	0	ENST00000382895.3:c.1235T>C	p.Leu412Pro	p.L412P	ENST00000382895	NM_133330.2	412	cTg/cCg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1961469	1961469	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	197	276	0	ENST00000382895.3:c.3255+2T>C		p.X1085_splice	ENST00000382895	NM_133330.2	1085																																																																																
PHOX2B	8929	MSKCC	GRCh37	4	41747903	41747903	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	69	383	0	ENST00000226382.2:c.866del	p.Gly289ValfsTer20	p.G289Vfs*20	ENST00000226382	NM_003924.3	289	gGt/gt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55131218	55131218	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	43	301	0	ENST00000257290.5:c.759+2T>C		p.X253_splice	ENST00000257290	NM_006206.4	253																																																																																
KIT	3815	MSKCC	GRCh37	4	55592218	55592218	+	splice_donor_variant	Splice_Site	SNP	T	T	C	rs760183633		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	28	230	0	ENST00000288135.5:c.1540+2T>C		p.X514_splice	ENST00000288135	NM_000222.2	514																																																																																
KDR	3791	MSKCC	GRCh37	4	55972952	55972952	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs750539689		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	32	276	0	ENST00000263923.4:c.1438T>C	p.Tyr480His	p.Y480H	ENST00000263923	NM_002253.2	480	Tac/Cac																																																																															
REST	5978	MSKCC	GRCh37	4	57796246	57796246	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	46	369	0	ENST00000309042.7:c.1222T>G	p.Phe408Val	p.F408V	ENST00000309042	NM_005612.4	408	Ttc/Gtc																																																																															
REST	5978	MSKCC	GRCh37	4	57797702	57797702	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	145	481	0	ENST00000309042.7:c.2678C>A	p.Pro893His	p.P893H	ENST00000309042	NM_005612.4	893	cCt/cAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213867	66213867	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	34	375	0	ENST00000273854.3:c.2563T>C	p.Phe855Leu	p.F855L	ENST00000273854	NM_004439.5	855	Ttt/Ctt																																																																															
ALB	213	MSKCC	GRCh37	4	74274500	74274500	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	38	303	0	ENST00000295897.4:c.460A>G	p.Asn154Asp	p.N154D	ENST00000295897	NM_000477.5	154	Aat/Gat																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84384668	84384668	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	30	234	0	ENST00000321945.7:c.775G>T	p.Gly259Ter	p.G259*	ENST00000321945	NM_139076.2	259	Gga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250878	153250878	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	46	273	0	ENST00000281708.4:c.1182A>G	p.Ile394Met	p.I394M	ENST00000281708	NM_033632.3	394	atA/atG																																																																															
FAT1	2195	MSKCC	GRCh37	4	187522582	187522582	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	51	275	0	ENST00000441802.2:c.11483-2A>G		p.X3828_splice	ENST00000441802	NM_005245.3	3828																																																																																
FAT1	2195	MSKCC	GRCh37	4	187524915	187524915	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs779472361		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	195	402	0	ENST00000441802.2:c.10765C>A	p.Leu3589Met	p.L3589M	ENST00000441802	NM_005245.3	3589	Ctg/Atg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532848	187532848	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	48	330	0	ENST00000441802.2:c.9545A>G	p.Gln3182Arg	p.Q3182R	ENST00000441802	NM_005245.3	3182	cAg/cGg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540910	187540910	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1414012626		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			722	72	397	0	ENST00000441802.2:c.6830A>G	p.Asn2277Ser	p.N2277S	ENST00000441802	NM_005245.3	2277	aAt/aGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627827	187627827	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			765	99	376	0	ENST00000441802.2:c.3155T>C	p.Leu1052Ser	p.L1052S	ENST00000441802	NM_005245.3	1052	tTg/tCg																																																																															
SDHA	6389	MSKCC	GRCh37	5	236651	236651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	60	320	0	ENST00000264932.6:c.1369C>T	p.Leu457Phe	p.L457F	ENST00000264932	NM_004168.2	457	Ctc/Ttc																																																																															
SDHA	6389	MSKCC	GRCh37	5	240484	240484	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	22	90	0	ENST00000264932.6:c.1444C>A	p.Pro482Thr	p.P482T	ENST00000264932	NM_004168.2	482	Cct/Act																																																																															
TRIP13	9319	MSKCC	GRCh37	5	901516	901516	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	68	344	0	ENST00000166345.3:c.505A>G	p.Ile169Val	p.I169V	ENST00000166345	NM_004237.3	169	Atc/Gtc																																																																															
TERT	7015	MSKCC	GRCh37	5	1271259	1271259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	44	300	0	ENST00000310581.5:c.2443C>A	p.His815Asn	p.H815N	ENST00000310581	NM_198253.2	815	Cac/Aac																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526669	31526669	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	110	405	0	ENST00000344624.3:c.371T>C	p.Met124Thr	p.M124T	ENST00000344624		124	aTg/aCg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38942439	38942439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	36	248	0	ENST00000357387.3:c.5094G>T	p.Lys1698Asn	p.K1698N	ENST00000357387	NM_152756.3	1698	aaG/aaT																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945086	38945086	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	46	310	0	ENST00000357387.3:c.4718T>C	p.Ile1573Thr	p.I1573T	ENST00000357387	NM_152756.3	1573	aTt/aCt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177515	56177515	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	63	348	0	ENST00000399503.3:c.2488G>T	p.Val830Leu	p.V830L	ENST00000399503	NM_005921.1	830	Gta/Tta																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177890	56177890	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs369409866		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			773	56	458	0	ENST00000399503.3:c.2863A>G	p.Met955Val	p.M955V	ENST00000399503	NM_005921.1	955	Atg/Gtg																																																																															
MSH3	4437	MSKCC	GRCh37	5	80083421	80083421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1217678820		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	46	314	0	ENST00000265081.6:c.2473G>A	p.Val825Met	p.V825M	ENST00000265081	NM_002439.4	825	Gtg/Atg																																																																															
MSH3	4437	MSKCC	GRCh37	5	80160749	80160749	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	37	337	0	ENST00000265081.6:c.3120del	p.Lys1040AsnfsTer20	p.K1040Nfs*20	ENST00000265081	NM_002439.4	1040	Aaa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86674243	86674243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	50	315	0	ENST00000274376.6:c.2375C>T	p.Thr792Ile	p.T792I	ENST00000274376	NM_002890.2	792	aCa/aTa																																																																															
APC	324	MSKCC	GRCh37	5	112116536	112116536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	30	254	0	ENST00000257430.4:c.581G>T	p.Arg194Met	p.R194M	ENST00000257430	NM_000038.5	194	aGg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112173998	112173998	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587782610		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	42	361	0	ENST00000257430.4:c.2707G>T	p.Asp903Tyr	p.D903Y	ENST00000257430	NM_000038.5	903	Gac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112174977	112174977	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	78	353	0	ENST00000257430.4:c.3686A>T	p.Asn1229Ile	p.N1229I	ENST00000257430	NM_000038.5	1229	aAt/aTt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131923701	131923701	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	49	298	0	ENST00000265335.6:c.971A>T	p.Asp324Val	p.D324V	ENST00000265335		324	gAc/gTc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149457724	149457724	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs912787749		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	78	354	0	ENST00000286301.3:c.680G>A	p.Ser227Asn	p.S227N	ENST00000286301	NM_005211.3	227	aGc/aAc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517637	176517637	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	63	403	0	ENST00000292408.4:c.338T>C	p.Leu113Pro	p.L113P	ENST00000292408	NM_213647.1	113	cTc/cCc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524562	176524562	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	82	505	0	ENST00000292408.4:c.2298del	p.Ser767LeufsTer110	p.S767Lfs*110	ENST00000292408	NM_213647.1	765	tCc/tc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176675220	176675220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			751	107	394	0	ENST00000439151.2:c.4536G>T	p.Lys1512Asn	p.K1512N	ENST00000439151	NM_022455.4	1512	aaG/aaT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043485	180043485	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	58	396	1	ENST00000261937.6:c.3101T>A	p.Ile1034Asn	p.I1034N	ENST00000261937	NM_182925.4	1034	aTc/aAc																																																																															
IRF4	3662	MSKCC	GRCh37	6	395897	395897	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1245046920		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	41	446	0	ENST00000380956.4:c.454T>C	p.Tyr152His	p.Y152H	ENST00000380956	NM_001195286.1	152	Tac/Cac																																																																															
E2F3	1871	MSKCC	GRCh37	6	20486933	20486933	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	34	219	0	ENST00000346618.3:c.898A>G	p.Thr300Ala	p.T300A	ENST00000346618	NM_001949.4	300	Aca/Gca																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020964	26020964	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs772494976		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			831	111	571	1	ENST00000357647.3:c.247C>A	p.Leu83Met	p.L83M	ENST00000357647	NM_003529.2	83	Ctg/Atg																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250607	26250607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			819	62	477	0	ENST00000446824.2:c.227C>T	p.Ala76Val	p.A76V	ENST00000446824	NM_021018.2	76	gCg/gTg																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858556	27858556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	39	406	0	ENST00000359303.2:c.15G>T	p.Lys5Asn	p.K5N	ENST00000359303	NM_003535.2	5	aaG/aaT																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910620	29910620	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs41549215		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	112	488	0	ENST00000376809.5:c.160G>T	p.Asp54Tyr	p.D54Y	ENST00000376809	NM_002116.7	54	Gac/Tac																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29913010	29913010	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	62	366	0	ENST00000376809.5:c.1046-1G>T		p.X349_splice	ENST00000376809	NM_002116.7	349																																																																																
MDC1	9656	MSKCC	GRCh37	6	30672986	30672986	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			989	147	655	0	ENST00000376406.3:c.3974T>G	p.Val1325Gly	p.V1325G	ENST00000376406	NM_014641.2	1325	gTt/gGt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680038	30680038	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	164	530	0	ENST00000376406.3:c.1681A>G	p.Lys561Glu	p.K561E	ENST00000376406	NM_014641.2	561	Aag/Gag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680728	30680728	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1467156129		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	80	401	0	ENST00000376406.3:c.991A>G	p.Thr331Ala	p.T331A	ENST00000376406	NM_014641.2	331	Act/Gct																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681919	30681919	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			716	41	389	0	ENST00000376406.3:c.178C>A	p.Pro60Thr	p.P60T	ENST00000376406	NM_014641.2	60	Cct/Act																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239108	31239108	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1131118		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	23	215	0	ENST00000376228.5:c.361A>G	p.Arg121Gly	p.R121G	ENST00000376228	NM_002117.5	121	Agg/Ggg																																																																															
STK19	8859	MSKCC	GRCh37	6	31947219	31947219	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			716	73	369	0	ENST00000375331.2:c.692A>G	p.Tyr231Cys	p.Y231C	ENST00000375331	NM_004197.1	231	tAt/tGt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32181994	32181994	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	75	427	0	ENST00000375023.3:c.2060A>G	p.Glu687Gly	p.E687G	ENST00000375023	NM_004557.3	687	gAg/gGg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798156	32798156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	46	402	0	ENST00000374899.4:c.1523G>A	p.Gly508Glu	p.G508E	ENST00000374899	NM_018833.2	508	gGg/gAg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805775	32805775	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs11537541		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	91	446	0	ENST00000374899.4:c.236T>C	p.Leu79Pro	p.L79P	ENST00000374899	NM_018833.2	79	cTg/cCg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287548	33287548	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			699	81	432	0	ENST00000374542.5:c.1549T>C	p.Ser517Pro	p.S517P	ENST00000374542	NM_001141970.1	517	Tct/Cct																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289522	33289522	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	44	348	0	ENST00000374542.5:c.181C>A	p.Leu61Met	p.L61M	ENST00000374542	NM_001141970.1	61	Ctg/Atg																																																																															
CCND3	896	MSKCC	GRCh37	6	41903682	41903682	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	59	381	0	ENST00000372991.4:c.875T>C	p.Leu292Pro	p.L292P	ENST00000372991	NM_001760.3	292	cTg/cCg																																																																															
CCND3	896	MSKCC	GRCh37	6	41909323	41909323	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	48	356	0	ENST00000372991.4:c.65T>C	p.Leu22Pro	p.L22P	ENST00000372991	NM_001760.3	22	cTg/cCg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965665	93965665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	86	347	0	ENST00000369303.4:c.2263G>A	p.Val755Ile	p.V755I	ENST00000369303	NM_004440.3	755	Gtt/Att																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979380	93979380	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	37	277	0	ENST00000369303.4:c.1450-2A>G		p.X484_splice	ENST00000369303	NM_004440.3	484																																																																																
ROS1	6098	MSKCC	GRCh37	6	117631311	117631311	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	35	296	0	ENST00000368508.3:c.6367C>A	p.Leu2123Ile	p.L2123I	ENST00000368508	NM_002944.2	2123	Ctc/Atc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117650552	117650552	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1049529195		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	47	411	0	ENST00000368508.3:c.5306T>C	p.Ile1769Thr	p.I1769T	ENST00000368508	NM_002944.2	1769	aTa/aCa																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137522121	137522121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	156	313	0	ENST00000367739.4:c.758C>A	p.Ala253Asp	p.A253D	ENST00000367739	NM_000416.2	253	gCt/gAt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004525	150004525	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			855	79	452	0	ENST00000253339.5:c.1700A>C	p.Asn567Thr	p.N567T	ENST00000253339		567	aAc/aCc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265557	152265557	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1051920835		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	42	354	2	ENST00000206249.3:c.1010T>C	p.Phe337Ser	p.F337S	ENST00000206249	NM_000125.3	337	tTc/tCc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382203	152382203	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1405407851		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	36	335	0	ENST00000206249.3:c.1313T>C	p.Met438Thr	p.M438T	ENST00000206249	NM_000125.3	438	aTg/aCg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419879	152419879	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	52	349	0	ENST00000206249.3:c.1566G>T	p.Met522Ile	p.M522I	ENST00000206249	NM_000125.3	522	atG/atT																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405848	157405848	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	73	444	0	ENST00000346085.5:c.2090G>T	p.Ser697Ile	p.S697I	ENST00000346085	NM_020732.3	697	aGc/aTc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527953	157527953	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			727	43	438	0	ENST00000346085.5:c.5678A>C	p.Asn1893Thr	p.N1893T	ENST00000346085	NM_020732.3	1893	aAc/aCc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527961	157527961	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	90	450	0	ENST00000346085.5:c.5689del	p.Gln1897ArgfsTer77	p.Q1897Rfs*77	ENST00000346085	NM_020732.3	1896	Ccc/cc																																																																															
PARK2	5071	MSKCC	GRCh37	6	161970006	161970006	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs767703008		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	109	293	0	ENST00000366898.1:c.963G>T	p.Glu321Asp	p.E321D	ENST00000366898	NM_004562.2	321	gaG/gaT																																																																															
PARK2	5071	MSKCC	GRCh37	6	162622192	162622192	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	41	372	0	ENST00000366898.1:c.505T>C	p.Cys169Arg	p.C169R	ENST00000366898	NM_004562.2	169	Tgc/Cgc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6043680	6043680	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1283674079		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	24	112	0	ENST00000265849.7:c.173T>C	p.Leu58Pro	p.L58P	ENST00000265849	NM_000535.5	58	cTt/cCt																																																																															
RAC1	5879	MSKCC	GRCh37	7	6431578	6431578	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	34	211	0	ENST00000356142.4:c.131T>C	p.Val44Ala	p.V44A	ENST00000356142	NM_018890.3	44	gTt/gCt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240678	55240678	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	45	432	0	ENST00000275493.2:c.1922C>T	p.Pro641Leu	p.P641L	ENST00000275493	NM_005228.3	641	cCt/cTt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508866	106508866	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	63	406	1	ENST00000359195.3:c.860T>C	p.Ile287Thr	p.I287T	ENST00000359195	NM_002649.2	287	aTc/aCc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545797	106545797	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	34	318	0	ENST00000359195.3:c.3274C>A	p.Leu1092Ile	p.L1092I	ENST00000359195	NM_002649.2	1092	Ctt/Att																																																																															
MET	4233	MSKCC	GRCh37	7	116339862	116339862	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs904275312		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	74	368	0	ENST00000397752.3:c.724A>G	p.Arg242Gly	p.R242G	ENST00000397752	NM_000245.2	242	Aga/Gga																																																																															
MET	4233	MSKCC	GRCh37	7	116380003	116380003	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	50	313	0	ENST00000397752.3:c.1393-1G>T		p.X465_splice	ENST00000397752	NM_000245.2	465																																																																																
EZH2	2146	MSKCC	GRCh37	7	148512068	148512068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	35	335	0	ENST00000320356.2:c.1610G>A	p.Ser537Asn	p.S537N	ENST00000320356	NM_004456.4	537	aGt/aAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151851495	151851495	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	64	346	0	ENST00000262189.6:c.11996A>C	p.Asp3999Ala	p.D3999A	ENST00000262189	NM_170606.2	3999	gAc/gCc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878385	151878385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			711	92	432	0	ENST00000262189.6:c.6560C>T	p.Thr2187Ile	p.T2187I	ENST00000262189	NM_170606.2	2187	aCt/aTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884562	151884562	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	29	262	0	ENST00000262189.6:c.4794-1G>T		p.X1598_splice	ENST00000262189	NM_170606.2	1598																																																																																
WHSC1L1	54904	MSKCC	GRCh37	8	38133242	38133242	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			751	103	434	0	ENST00000317025.8:c.4231A>G	p.Met1411Val	p.M1411V	ENST00000317025	NM_023034.1	1411	Atg/Gtg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146018	38146018	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	49	362	0	ENST00000317025.8:c.3488G>T	p.Arg1163Met	p.R1163M	ENST00000317025	NM_023034.1	1163	aGg/aTg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38186960	38186960	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	45	362	0	ENST00000317025.8:c.1517T>C	p.Val506Ala	p.V506A	ENST00000317025	NM_023034.1	506	gTg/gCg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372463	55372463	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754601531		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	64	432	0	ENST00000297316.4:c.1153G>A	p.Gly385Ser	p.G385S	ENST00000297316	NM_022454.3	385	Ggt/Agt																																																																															
LYN	4067	MSKCC	GRCh37	8	56866479	56866479	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	153	417	0	ENST00000519728.1:c.730del	p.Arg244GlyfsTer7	p.R244Gfs*7	ENST00000519728	NM_002350.3	242	atC/at																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020419	69020419	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	47	301	0	ENST00000288368.4:c.2791A>G	p.Ser931Gly	p.S931G	ENST00000288368	NM_024870.2	931	Agt/Ggt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964468	70964468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	94	381	0	ENST00000276594.2:c.1560G>T	p.Lys520Asn	p.K520N	ENST00000276594	NM_024504.3	520	aaG/aaT																																																																															
NBN	4683	MSKCC	GRCh37	8	90965613	90965613	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	34	406	0	ENST00000265433.3:c.1704G>T	p.Lys568Asn	p.K568N	ENST00000265433	NM_002485.4	568	aaG/aaT																																																																															
NBN	4683	MSKCC	GRCh37	8	90993601	90993601	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	40	223	0	ENST00000265433.3:c.320+2T>C		p.X107_splice	ENST00000265433	NM_002485.4	107																																																																																
RAD21	5885	MSKCC	GRCh37	8	117866585	117866585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	48	342	0	ENST00000297338.2:c.1060G>A	p.Ala354Thr	p.A354T	ENST00000297338	NM_006265.2	354	Gca/Aca																																																																															
AGO2	27161	MSKCC	GRCh37	8	141549426	141549426	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	31	307	0	ENST00000220592.5:c.2162A>G	p.Asn721Ser	p.N721S	ENST00000220592	NM_012154.3	721	aAc/aGc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737819	145737819	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	66	429	0	ENST00000428558.2:c.3011G>T	p.Arg1004Leu	p.R1004L	ENST00000428558	NM_004260.3	1004	cGg/cTg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741953	145741953	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	46	437	0	ENST00000428558.2:c.550G>T	p.Gly184Cys	p.G184C	ENST00000428558	NM_004260.3	184	Ggc/Tgc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2047306	2047306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	12	88	0	ENST00000349721.2:c.868G>A	p.Ala290Thr	p.A290T	ENST00000349721	NM_003070.3	290	Gcg/Acg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2086923	2086923	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	211	464	0	ENST00000349721.2:c.2621C>A	p.Pro874His	p.P874H	ENST00000349721	NM_003070.3	874	cCc/cAc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2115985	2115985	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			825	76	370	0	ENST00000349721.2:c.3620A>C	p.Lys1207Thr	p.K1207T	ENST00000349721	NM_003070.3	1207	aAg/aCg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2170434	2170434	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	47	275	0	ENST00000349721.2:c.4215G>T	p.Lys1405Asn	p.K1405N	ENST00000349721	NM_003070.3	1405	aaG/aaT																																																																															
FANCC	2176	MSKCC	GRCh37	9	98002971	98002971	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	43	269	0	ENST00000289081.3:c.305C>A	p.Pro102Gln	p.P102Q	ENST00000289081	NM_000136.2	102	cCa/cAa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98220468	98220468	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	69	392	0	ENST00000331920.6:c.2995A>G	p.Ser999Gly	p.S999G	ENST00000331920	NM_000264.3	999	Agc/Ggc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229653	98229653	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	116	326	0	ENST00000331920.6:c.2305A>G	p.Thr769Ala	p.T769A	ENST00000331920	NM_000264.3	769	Acc/Gcc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249983	110249983	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	60	352	0	ENST00000374672.4:c.692T>C	p.Leu231Pro	p.L231P	ENST00000374672	NM_004235.4	231	cTg/cCg																																																																															
ABL1	25	MSKCC	GRCh37	9	133750427	133750427	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	45	406	1	ENST00000318560.5:c.1258T>A	p.Ser420Thr	p.S420T	ENST00000318560	NM_005157.4	420	Tcc/Acc																																																																															
ABL1	25	MSKCC	GRCh37	9	133759731	133759731	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1442339978		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	48	371	0	ENST00000318560.5:c.2054A>G	p.His685Arg	p.H685R	ENST00000318560	NM_005157.4	685	cAc/cGc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771686	135771686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	90	402	0	ENST00000298552.3:c.3431C>T	p.Thr1144Ile	p.T1144I	ENST00000298552	NM_001162426.1	1144	aCc/aTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139407876	139407876	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1198316092		P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	79	419	1	ENST00000277541.6:c.2321G>A	p.Gly774Asp	p.G774D	ENST00000277541	NM_017617.3	774	gGc/gAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933706	39933706	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	150	455	0	ENST00000378444.4:c.893C>A	p.Pro298His	p.P298H	ENST00000378444	NM_001123385.1	298	cCt/cAt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44732952	44732952	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	24	306	1	ENST00000377967.4:c.155T>C	p.Leu52Pro	p.L52P	ENST00000377967	NM_021140.2	52	cTg/cCg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949116	44949116	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	58	309	0	ENST00000377967.4:c.3677A>G	p.His1226Arg	p.H1226R	ENST00000377967	NM_021140.2	1226	cAt/cGt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413000	63413000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			738	47	446	1	ENST00000330258.3:c.167C>A	p.Ala56Asp	p.A56D	ENST00000330258	NM_152424.3	56	gCc/gAc																																																																															
ALK	238	MSKCC	GRCh37	2	29940528	29940528	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	37	323	0	ENST00000389048.3:c.703T>C	p.Ser235Pro	p.S235P	ENST00000389048	NM_004304.4	235	Tct/Cct																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306928	65306928	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0073447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	69	380	0	ENST00000342505.4:c.2649G>C	p.Glu883Asp	p.E883D	ENST00000342505	NM_002227.2	883	gaG/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0073447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	133	376	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0073447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	172	384	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0073447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	95	367	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76776305	76776305	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	24	290	0	ENST00000373344.5:c.7161A>C	p.Arg2387Ser	p.R2387S	ENST00000373344	NM_000489.3	2387	agA/agC																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519816		P-0073454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	164	360	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0073454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	86	356	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0073454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	69	356	7	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258744	115258744	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121434596		P-0073454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	67	319	0	ENST00000369535.4:c.38G>T	p.Gly13Val	p.G13V	ENST00000369535	NM_002524.4	13	gGt/gTt																																																																															
MET	4233	MSKCC	GRCh37	7	116397692	116397692	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0073454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	61	339	0	ENST00000397752.3:c.1966G>A	p.Asp656Asn	p.D656N	ENST00000397752	NM_000245.2	656	Gat/Aat																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549404	21549404	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753026198		P-0073454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	177	465	0	ENST00000382592.4:c.2872C>T	p.Arg958Cys	p.R958C	ENST00000382592	NM_014572.2	958	Cgc/Tgc																																																																															
NF1	4763	MSKCC	GRCh37	17	29528146	29528146	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1350329837		P-0073454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	42	305	0	ENST00000358273.4:c.1154G>A	p.Arg385His	p.R385H	ENST00000358273	NM_001042492.2	385	cGt/cAt																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082189	16082189	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0073454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	66	307	0	ENST00000281043.3:c.3G>A	p.Met1?	p.M1?	ENST00000281043	NM_005378.4	1	atG/atA																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858281	27858281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	142	597	0	ENST00000359303.2:c.290G>A	p.Cys97Tyr	p.C97Y	ENST00000359303	NM_003535.2	97	tGc/tAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29556319	29556319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073454-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	66	374	0	ENST00000358273.4:c.2686G>T	p.Asp896Tyr	p.D896Y	ENST00000358273	NM_001042492.2	896	Gat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0073505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	70	366	0	ENST00000257430.4:c.4067C>A	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112162807	112162807	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0073505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	88	274	0	ENST00000257430.4:c.1411G>T	p.Gly471Ter	p.G471*	ENST00000257430	NM_000038.5	471	Gga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0073505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	132	252	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178937442	178937442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	27	146	0	ENST00000263967.3:c.1830G>T	p.Met610Ile	p.M610I	ENST00000263967	NM_006218.2	610	atG/atT																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0073510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	125	325	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591925	48591925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	167	437	0	ENST00000342988.3:c.1088G>T	p.Cys363Phe	p.C363F	ENST00000342988	NM_005359.5	363	tGt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577525	7577527	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0073510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	205	377	0	ENST00000269305.4:c.754_756del	p.Leu252del	p.L252del	ENST00000269305	NM_001126112.2	252	CTC/-																																																																															
APC	324	MSKCC	GRCh37	5	112175944	112175945	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0073510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	409	404	0	ENST00000257430.4:c.4655_4656del	p.Glu1552GlyfsTer6	p.E1552Gfs*6	ENST00000257430	NM_000038.5	1551	aaAGag/aaag																																																																															
CTR9	9646	MSKCC	GRCh37	11	10785892	10785892	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	245	419	0	ENST00000361367.2:c.1322T>C	p.Leu441Pro	p.L441P	ENST00000361367	NM_014633.3	441	cTt/cCt																																																																															
NADK	65220	MSKCC	GRCh37	1	1688568	1688568	+	intron_variant	Intron	DEL	C	C	-			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	156	492	2	ENST00000341426.5:c.393+52del		p.*131*	ENST00000341426	NM_023018.4																																																																																	
MTOR	2475	MSKCC	GRCh37	1	11190702	11190702	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	237	593	0	ENST00000361445.4:c.5497A>G	p.Thr1833Ala	p.T1833A	ENST00000361445	NM_004958.3	1833	Acc/Gcc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89693003	89693003	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	72	313	0	ENST00000371953.3:c.491del	p.Lys164ArgfsTer3	p.K164Rfs*3	ENST00000371953	NM_000314.4	163	Aaa/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	90	267	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	145	383	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575147	64575147	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs886039414		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	93	574	0	ENST00000337652.1:c.675G>A	p.Trp225Ter	p.W225*	ENST00000337652	NM_130803.2	225	tgG/tgA																																																																															
PGR	5241	MSKCC	GRCh37	11	100912816	100912816	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs776604342		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	115	326	0	ENST00000325455.5:c.2506C>T	p.Arg836Ter	p.R836*	ENST00000325455	NM_001202474.3	836	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108121571	108121571	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781841		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	111	495	1	ENST00000278616.4:c.1379C>T	p.Thr460Met	p.T460M	ENST00000278616	NM_000051.3	460	aCg/aTg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416769	416769	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773466573		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	203	519	0	ENST00000399788.2:c.3781C>T	p.Arg1261Trp	p.R1261W	ENST00000399788	NM_001042603.1	1261	Cgg/Tgg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	420145	420145	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs564426386		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	226	452	0	ENST00000399788.2:c.3122C>T	p.Pro1041Leu	p.P1041L	ENST00000399788	NM_001042603.1	1041	cCg/cTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18656227	18656227	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1431955138		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	107	389	0	ENST00000266497.5:c.2906T>C	p.Met969Thr	p.M969T	ENST00000266497		969	aTg/aCg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	80	416	6	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	96	311	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427265	49427266	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC	rs398123707		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	129	560	0	ENST00000301067.7:c.11220_11222dup	p.Gln3745dup	p.Q3745dup	ENST00000301067	NM_003482.3	3745	caa/caGCAa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	197	454	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112325	115112325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	122	470	0	ENST00000257566.3:c.1415C>T	p.Ala472Val	p.A472V	ENST00000257566	NM_016569.3	472	gCg/gTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907421	32907421	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs80359307		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	108	461	6	ENST00000380152.3:c.1813del	p.Ile605TyrfsTer9	p.I605Yfs*9	ENST00000380152		602	ggA/gg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972625	32972626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1328254546		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	106	406	0	ENST00000380152.3:c.9981dup	p.Phe3328IlefsTer3	p.F3328Ifs*3	ENST00000380152		3325	-/A																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	41	484	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
B2M	567	MSKCC	GRCh37	15	45007855	45007855	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	169	421	0	ENST00000558401.1:c.302del	p.Arg101LeufsTer2	p.R101Lfs*2	ENST00000558401	NM_004048.2	101	cGt/ct																																																																															
B2M	567	MSKCC	GRCh37	15	45007871	45007871	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	145	417	0	ENST00000558401.1:c.320del	p.Leu107CysfsTer6	p.L107Cfs*6	ENST00000558401	NM_004048.2	106	acT/ac																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	120	531	8	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900479	3900479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759312345		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	158	492	0	ENST00000262367.5:c.617C>T	p.Ala206Val	p.A206V	ENST00000262367	NM_004380.2	206	gCg/gTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274172	10274172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	140	446	1	ENST00000330684.3:c.97G>A	p.Ala33Thr	p.A33T	ENST00000330684	NM_001134407.1	33	Gcg/Acg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	184	540	2	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992127	72992127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748545102		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	173	579	1	ENST00000268489.5:c.1918G>A	p.Val640Met	p.V640M	ENST00000268489	NM_006885.3	640	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730882026		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	17	385	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	132	497	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs786201057		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	160	413	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879604	37879604	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1196929947		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	472	558	4	ENST00000269571.5:c.1979G>A	p.Gly660Asp	p.G660D	ENST00000269571		660	gGc/gAc																																																																															
CD79B	974	MSKCC	GRCh37	17	62009608	62009608	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748240443		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	168	488	1	ENST00000392795.3:c.14C>T	p.Ala5Val	p.A5V	ENST00000392795	NM_001039933.1	5	gCg/gTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118924	70118926	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	227	567	0	ENST00000245479.2:c.499_501del	p.Lys167del	p.K167del	ENST00000245479	NM_000346.3	166	AAG/-																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118949	70118949	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	140	512	0	ENST00000245479.2:c.521A>G	p.Tyr174Cys	p.Y174C	ENST00000245479	NM_000346.3	174	tAc/tGc																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732956	74732956	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	12	474	2	ENST00000359995.5:c.287del	p.Pro96ArgfsTer136	p.P96Rfs*136	ENST00000359995	NM_001195427.1	96	cCg/cg																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110245	3110245	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777099166		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	192	564	0	ENST00000078429.4:c.235G>A	p.Val79Ile	p.V79I	ENST00000078429	NM_002067.2	79	Gtc/Atc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11030275	11030275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	189	450	0	ENST00000327064.4:c.1025C>T	p.Thr342Ile	p.T342I	ENST00000327064	NM_199141.1	342	aCa/aTa																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	103	369	2	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	171	473	10	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384650	31384651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756395138		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	195	523	0	ENST00000328111.2:c.1359dup	p.Leu454AlafsTer11	p.L454Afs*11	ENST00000328111	NM_006892.3	451	gag/gaGg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21347150	21347150	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375451574		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	185	520	0	ENST00000215739.8:c.1217C>T	p.Thr406Met	p.T406M	ENST00000215739	NM_006767.3	406	aCg/aTg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279864	29279864	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	69	252	0	ENST00000544604.2:c.110T>C	p.Leu37Pro	p.L37P	ENST00000544604	NM_001206998.1	37	cTg/cCg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	166	461	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427727	72427727	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753080686		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	179	438	0	ENST00000477973.2:c.761G>A	p.Val255Ile	p.V255I	ENST00000477973	NM_012234.5	255	Gtc/Atc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	97	406	1	ENST00000263967.3:c.316G>T	p.Gly106Cys	p.G106C	ENST00000263967	NM_006218.2	106	Ggc/Tgc																																																																															
TP63	8626	MSKCC	GRCh37	3	189526314	189526314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	191	523	0	ENST00000264731.3:c.578C>T	p.Thr193Met	p.T193M	ENST00000264731	NM_003722.4	193	aCg/aTg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55153609	55153609	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060501520		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	124	399	0	ENST00000257290.5:c.2575G>A	p.Val859Met	p.V859M	ENST00000257290	NM_006206.4	859	Gtg/Atg																																																																															
KIT	3815	MSKCC	GRCh37	4	55564477	55564477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	153	424	0	ENST00000288135.5:c.365G>A	p.Arg122His	p.R122H	ENST00000288135	NM_000222.2	122	cGc/cAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592130	67592130	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1389187507		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	25	395	0	ENST00000274335.5:c.1946G>A	p.Arg649Gln	p.R649Q	ENST00000274335		649	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	140	367	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	112	512	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
APC	324	MSKCC	GRCh37	5	112176209	112176209	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373440614		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	172	516	0	ENST00000257430.4:c.4918C>T	p.Arg1640Trp	p.R1640W	ENST00000257430	NM_000038.5	1640	Cgg/Tgg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	105	463	1	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522211	157522211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	219	527	0	ENST00000346085.5:c.4483C>T	p.Arg1495Cys	p.R1495C	ENST00000346085	NM_020732.3	1495	Cgc/Tgc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209573	98209573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	153	503	0	ENST00000331920.6:c.3965C>T	p.Ala1322Val	p.A1322V	ENST00000331920	NM_000264.3	1322	gCt/gTt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	144	502	2	ENST00000331920.6:c.3921del	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229520	98229520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	186	508	0	ENST00000331920.6:c.2438C>T	p.Pro813Leu	p.P813L	ENST00000331920	NM_000264.3	813	cCg/cTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409841	139409841	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779794980		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	125	482	0	ENST00000277541.6:c.1915G>A	p.Glu639Lys	p.E639K	ENST00000277541	NM_017617.3	639	Gag/Aag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	174	285	0	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																															
MED12	9968	MSKCC	GRCh37	X	70339584	70339584	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	174	170	0	ENST00000374080.3:c.253A>G	p.Thr85Ala	p.T85A	ENST00000374080		85	Acc/Gcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214636	36214636	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376006013		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	148	500	0	ENST00000222270.7:c.3062G>A	p.Arg1021Gln	p.R1021Q	ENST00000222270	NM_014727.1	1021	cGg/cAg																																																																															
NADK	65220	MSKCC	GRCh37	1	1691340	1691340	+	intron_variant	Intron	SNP	C	C	A	rs1009020483		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	127	451	0	ENST00000341426.5:c.263+2051G>T		p.*88*	ENST00000341426	NM_023018.4																																																																																	
ID3	3399	MSKCC	GRCh37	1	23885896	23885896	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	192	428	0	ENST00000374561.5:c.22C>A	p.Arg8Ser	p.R8S	ENST00000374561	NM_002167.4	8	Cgc/Agc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097815	27097819	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CTGGT	CTGGT	TTGG			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	201	460	1	ENST00000324856.7:c.3404_3406+2delinsTTGG		p.X1135_splice	ENST00000324856	NM_006015.4	1135																																																																																
CSF3R	1441	MSKCC	GRCh37	1	36932342	36932342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	201	571	0	ENST00000361632.4:c.2127G>T	p.Trp709Cys	p.W709C	ENST00000361632		709	tgG/tgT																																																																															
NRAS	4893	MSKCC	GRCh37	1	115252272	115252272	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	38	445	0	ENST00000369535.4:c.368G>T	p.Arg123Met	p.R123M	ENST00000369535	NM_002524.4	123	aGg/aTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120457997	120457997	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			716	45	570	0	ENST00000256646.2:c.7348G>T	p.Gly2450Ter	p.G2450*	ENST00000256646	NM_024408.3	2450	Gga/Tga																																																																															
FH	2271	MSKCC	GRCh37	1	241675373	241675373	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	43	333	0	ENST00000366560.3:c.449A>G	p.Asn150Ser	p.N150S	ENST00000366560	NM_000143.3	150	aAt/aGt																																																																															
TET1	80312	MSKCC	GRCh37	10	70442592	70442592	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	30	387	0	ENST00000373644.4:c.4915-1G>T		p.X1639_splice	ENST00000373644	NM_030625.2	1639																																																																																
FOXO1	2308	MSKCC	GRCh37	13	41134036	41134036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	210	607	0	ENST00000379561.5:c.1592C>T	p.Thr531Ile	p.T531I	ENST00000379561	NM_002015.3	531	aCa/aTa																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38591594	38591594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758855467		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	134	295	0	ENST00000299084.4:c.53G>A	p.Arg18Gln	p.R18Q	ENST00000299084	NM_152594.2	18	cGa/cAa																																																																															
MGA	23269	MSKCC	GRCh37	15	41961982	41961982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	168	491	0	ENST00000219905.7:c.890G>A	p.Gly297Asp	p.G297D	ENST00000219905	NM_001164273.1	297	gGt/gAt																																																																															
USP8	9101	MSKCC	GRCh37	15	50773965	50773965	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	136	492	0	ENST00000307179.4:c.1506A>C	p.Lys502Asn	p.K502N	ENST00000307179		502	aaA/aaC																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457282	67457282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			722	40	664	0	ENST00000327367.4:c.256G>A	p.Val86Ile	p.V86I	ENST00000327367	NM_005902.3	86	Gtc/Atc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	397003	397003	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	143	518	0	ENST00000262320.3:c.23T>C	p.Phe8Ser	p.F8S	ENST00000262320	NM_003502.3	8	tTc/tCc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857013	9857013	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	20	346	0	ENST00000330684.3:c.4388A>G	p.Asp1463Gly	p.D1463G	ENST00000330684	NM_001134407.1	1463	gAt/gGt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89845404	89845404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	34	478	0	ENST00000389301.3:c.1723A>G	p.Arg575Gly	p.R575G	ENST00000389301	NM_000135.2	575	Agg/Ggg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974886	15974886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	95	458	0	ENST00000268712.3:c.3989G>A	p.Gly1330Asp	p.G1330D	ENST00000268712	NM_006311.3	1330	gGt/gAt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16062124	16062124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	33	420	0	ENST00000268712.3:c.682G>A	p.Val228Met	p.V228M	ENST00000268712	NM_006311.3	228	Gtg/Atg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264407	30264407	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	151	516	0	ENST00000322652.5:c.146del	p.Gly49ValfsTer23	p.G49Vfs*23	ENST00000322652	NM_015355.2	48	Ggg/gg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372051	45372051	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	93	432	0	ENST00000262160.6:c.1118T>C	p.Val373Ala	p.V373A	ENST00000262160	NM_005901.5	373	gTg/gCg																																																																															
INSR	3643	MSKCC	GRCh37	19	7132241	7132241	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs387906538		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	264	525	0	ENST00000302850.5:c.2770C>T	p.Arg924Ter	p.R924*	ENST00000302850	NM_000208.2	924	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210853	36210853	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747114453		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	127	601	0	ENST00000222270.7:c.604G>A	p.Ala202Thr	p.A202T	ENST00000222270	NM_014727.1	202	Gca/Aca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211790	36211790	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	167	561	0	ENST00000222270.7:c.1545del	p.Ser517AlafsTer5	p.S517Afs*5	ENST00000222270	NM_014727.1	514	gCc/gc																																																																															
CIC	23152	MSKCC	GRCh37	19	42797414	42797414	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs896221288		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	190	568	0	ENST00000575354.2:c.3776C>T	p.Ala1259Val	p.A1259V	ENST00000575354	NM_015125.3	1259	gCc/gTc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164804	36164805	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	238	656	0	ENST00000300305.3:c.1070_1071insA	p.Thr358AspfsTer242	p.T358Dfs*242	ENST00000300305		357	ccg/ccAg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446734	29446734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	124	505	0	ENST00000544604.2:c.2565G>T	p.Trp855Cys	p.W855C	ENST00000544604	NM_001206998.1	855	tgG/tgT																																																																															
RAF1	5894	MSKCC	GRCh37	3	12632465	12632465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	40	522	0	ENST00000251849.4:c.1202G>A	p.Arg401Gln	p.R401Q	ENST00000251849	NM_002880.3	401	cGg/cAg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37058996	37058996	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs267607795		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	272	359	0	ENST00000231790.2:c.791-1G>A		p.X264_splice	ENST00000231790	NM_000249.3	264																																																																																
RYBP	23429	MSKCC	GRCh37	3	72428526	72428526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	140	444	0	ENST00000477973.2:c.476G>A	p.Ala160Thr	p.A160T	ENST00000477973	NM_012234.5	160	Gcc/Acc																																																																															
ATR	545	MSKCC	GRCh37	3	142281807	142281807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	115	395	0	ENST00000350721.4:c.437C>T	p.Thr146Ile	p.T146I	ENST00000350721	NM_001184.3	146	aCa/aTa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535421	66535421	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1371005552		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	82	397	0	ENST00000273854.3:c.40C>A	p.Pro14Thr	p.P14T	ENST00000273854	NM_004439.5	14	Ccc/Acc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510279	187510279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	36	397	0	ENST00000441802.2:c.13234C>A	p.Leu4412Met	p.L4412M	ENST00000441802	NM_005245.3	4412	Ctg/Atg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524363	187524363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	185	497	0	ENST00000441802.2:c.11317del	p.Arg3773AlafsTer60	p.R3773Afs*60	ENST00000441802	NM_005245.3	3773	Cgc/gc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541631	187541631	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	220	541	0	ENST00000441802.2:c.6109A>G	p.Thr2037Ala	p.T2037A	ENST00000441802	NM_005245.3	2037	Acg/Gcg																																																																															
SDHA	6389	MSKCC	GRCh37	5	251494	251494	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	44	120	0	ENST00000264932.6:c.1705C>T	p.Gln569Ter	p.Q569*	ENST00000264932	NM_004168.2	569	Cag/Tag																																																																															
TERT	7015	MSKCC	GRCh37	5	1296008	1296008	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1439648793		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	195	612	2				ENST00000310581	NM_198253.2																																																																																	
CSF1R	1436	MSKCC	GRCh37	5	149435701	149435701	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	131	504	0	ENST00000286301.3:c.2443-1G>T		p.X815_splice	ENST00000286301	NM_005211.3	815																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176517648	176517648	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1409743498		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	142	558	0	ENST00000292408.4:c.349A>G	p.Thr117Ala	p.T117A	ENST00000292408	NM_213647.1	117	Aca/Gca																																																																															
NSD1	64324	MSKCC	GRCh37	5	176722164	176722164	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1163634341		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	203	565	0	ENST00000439151.2:c.7795T>C	p.Ser2599Pro	p.S2599P	ENST00000439151	NM_022455.4	2599	Tct/Cct																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030294	180030294	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	132	546	0	ENST00000261937.6:c.3990G>T	p.Gln1330His	p.Q1330H	ENST00000261937	NM_182925.4	1330	caG/caT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180041176	180041176	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751949687		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	202	621	0	ENST00000261937.6:c.3223C>T	p.Arg1075Trp	p.R1075W	ENST00000261937	NM_182925.4	1075	Cgg/Tgg																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225786	26225786	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	39	502	0	ENST00000360408.1:c.404G>T	p.Arg135Met	p.R135M	ENST00000360408	NM_003532.2	135	aGg/aTg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816832	32816832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	89	398	0	ENST00000354258.4:c.1492G>A	p.Ala498Thr	p.A498T	ENST00000354258	NM_000593.5	498	Gct/Act																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120674	94120674	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	122	443	0	ENST00000369303.4:c.377A>T	p.Tyr126Phe	p.Y126F	ENST00000369303	NM_004440.3	126	tAc/tTc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117683974	117683974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1210694550		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	60	447	0	ENST00000368508.3:c.3173G>A	p.Cys1058Tyr	p.C1058Y	ENST00000368508	NM_002944.2	1058	tGc/tAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992720	68992721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	79	419	0	ENST00000288368.4:c.1692_1693dup	p.Ser565PhefsTer11	p.S565Ffs*11	ENST00000288368	NM_024870.2	562	cgt/cgTTt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046297	69046297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	108	413	0	ENST00000288368.4:c.3770G>A	p.Ser1257Asn	p.S1257N	ENST00000288368	NM_024870.2	1257	aGt/aAt																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2047370	2047370	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1389950038		P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	86	274	0	ENST00000349721.2:c.935del	p.Pro312ArgfsTer43	p.P312Rfs*43	ENST00000349721	NM_003070.3	311	gCc/gc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410504	139410504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	144	414	0	ENST00000277541.6:c.1598C>A	p.Ala533Asp	p.A533D	ENST00000277541	NM_017617.3	533	gCc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175852	112175852	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	174	521	0	ENST00000257430.4:c.4561G>T	p.Glu1521Ter	p.E1521*	ENST00000257430	NM_000038.5	1521	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112154942	112154942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779780		P-0073555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	181	522	0	ENST00000257430.4:c.1213C>T	p.Arg405Ter	p.R405*	ENST00000257430	NM_000038.5	405	Cga/Tga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039356	47039358	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0073555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	212	280	0	ENST00000329236.7:c.754_756del	p.Ser252del	p.S252del	ENST00000329236	NM_001204466.1	250	TCC/-																																																																															
APC	324	MSKCC	GRCh37	5	112173947	112173947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0073555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	201	532	0	ENST00000257430.4:c.2656C>T	p.Gln886Ter	p.Q886*	ENST00000257430	NM_000038.5	886	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0073555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	132	342	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95557639	95557639	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073555-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	152	443	0	ENST00000343455.3:c.5428G>T	p.Asp1810Tyr	p.D1810Y	ENST00000343455	NM_177438.2	1810	Gat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0073574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	145	292	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
INSR	3643	MSKCC	GRCh37	19	7125355	7125355	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372010924		P-0073574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	165	354	0	ENST00000302850.5:c.3197G>A	p.Arg1066Gln	p.R1066Q	ENST00000302850	NM_000208.2	1066	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0073574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	160	192	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225365138	225365141	+	frameshift_variant	Frame_Shift_Del	DEL	CTGA	CTGA	-			P-0073574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	145	306	0	ENST00000264414.4:c.1549_1552del	p.Ser517ProfsTer23	p.S517Pfs*23	ENST00000264414	NM_003590.4	517	TCAGcc/cc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731186	162731186	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	165	335	0	ENST00000367921.3:c.1041G>T	p.Lys347Asn	p.K347N	ENST00000367921	NM_006182.2	347	aaG/aaT																																																																															
TEK	7010	MSKCC	GRCh37	9	27212786	27212786	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	132	298	0	ENST00000380036.4:c.2768A>G	p.Asp923Gly	p.D923G	ENST00000380036	NM_000459.3	923	gAc/gGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100208	27100208	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs756511649		P-0073578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	8	649	0	ENST00000324856.7:c.4004G>A	p.Arg1335Gln	p.R1335Q	ENST00000324856	NM_006015.4	1335	cGa/cAa																																																																															
ACVR1	90	MSKCC	GRCh37	2	158634707	158634707	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751524299		P-0073578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	10	507	0	ENST00000263640.3:c.479G>A	p.Arg160Gln	p.R160Q	ENST00000263640	NM_001105.4	160	cGa/cAa																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074055	8074055	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1032815946		P-0073581-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	120	480	1	ENST00000377482.5:c.604C>T	p.Arg202Cys	p.R202C	ENST00000377482	NM_018948.3	202	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0073581-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	98	391	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0073581-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	152	637	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910746	29910746	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs199474452		P-0073581-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	158	680	0	ENST00000376809.5:c.286C>T	p.Gln96Ter	p.Q96*	ENST00000376809	NM_002116.7	96	Cag/Tag																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197875	123197875	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776905490		P-0073581-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	23	355	0	ENST00000218089.9:c.1999C>T	p.Arg667Trp	p.R667W	ENST00000218089	NM_001042749.1	667	Cgg/Tgg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123246883	123246883	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073581-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	99	450	0	ENST00000358487.5:c.2042C>G	p.Thr681Ser	p.T681S	ENST00000358487	NM_000141.4	681	aCt/aGt																																																																															
APC	324	MSKCC	GRCh37	5	112174431	112174431	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073581-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	130	515	0	ENST00000257430.4:c.3142del	p.Arg1048AspfsTer8	p.R1048Dfs*8	ENST00000257430	NM_000038.5	1047	gAa/ga																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152864509	152864509	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0073581-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	22	278	0	ENST00000406277.2:c.19G>A	p.Gly7Arg	p.G7R	ENST00000406277	NM_152274.4	7	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0073584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	128	393	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250883	153250883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0073584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	153	306	0	ENST00000281708.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000281708	NM_033632.3	393	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11317099	11317099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201093943		P-0073584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	33	514	0	ENST00000361445.4:c.395G>A	p.Arg132His	p.R132H	ENST00000361445	NM_004958.3	132	cGt/cAt																																																																															
AXL	558	MSKCC	GRCh37	19	41763488	41763488	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746364612		P-0073584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	121	439	0	ENST00000301178.4:c.2287C>T	p.Arg763Cys	p.R763C	ENST00000301178	NM_021913.4	763	Cgc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108172509	108172510	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0073584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	119	319	0	ENST00000278616.4:c.5318dup	p.Phe1774ValfsTer8	p.F1774Vfs*8	ENST00000278616	NM_000051.3	1771	aga/agAa																																																																															
APC	324	MSKCC	GRCh37	5	112175749	112175750	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0073584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	68	550	0	ENST00000257430.4:c.4459_4460dup	p.Leu1489TyrfsTer19	p.L1489Yfs*19	ENST00000257430	NM_000038.5	1486	-/AC																																																																															
APC	324	MSKCC	GRCh37	5	112174372	112174372	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0073584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	118	394	0	ENST00000257430.4:c.3081T>A	p.Tyr1027Ter	p.Y1027*	ENST00000257430	NM_000038.5	1027	taT/taA																																																																															
ABL1	25	MSKCC	GRCh37	9	133759407	133759407	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749127690		P-0073584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	45	399	0	ENST00000318560.5:c.1730G>A	p.Arg577Gln	p.R577Q	ENST00000318560	NM_005157.4	577	cGa/cAa																																																																															
ALB	213	MSKCC	GRCh37	4	74277724	74277724	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs75002628		P-0073584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	162	380	0	ENST00000295897.4:c.725G>A	p.Arg242His	p.R242H	ENST00000295897	NM_000477.5	242	cGc/cAc																																																																															
ERF	2077	MSKCC	GRCh37	19	42752967	42752967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	106	536	0	ENST00000222329.4:c.1297G>A	p.Gly433Ser	p.G433S	ENST00000222329	NM_006494.2	433	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0073586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	107	592	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0073586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	46	319	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
RET	5979	MSKCC	GRCh37	10	43601881	43601881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	76	483	0	ENST00000355710.3:c.925G>A	p.Glu309Lys	p.E309K	ENST00000355710	NM_020975.4	309	Gag/Aag																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1331521	1331521	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374874204		P-0073586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	35	331	0	ENST00000381566.1:c.7C>T	p.Arg3Trp	p.R3W	ENST00000381566		3	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112162946	112162946	+	splice_donor_variant	Splice_Site	SNP	T	T	C	rs1057517561		P-0073586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	56	338	0	ENST00000257430.4:c.1548+2T>C		p.X516_splice	ENST00000257430	NM_000038.5	516																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212488721	212488721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	31	455	0	ENST00000342788.4:c.2128C>A	p.Leu710Ile	p.L710I	ENST00000342788	NM_005235.2	710	Ctt/Att																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238758086		P-0073586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			775	19	565	0	ENST00000358026.2:c.2729C>T	p.Thr910Met	p.T910M	ENST00000358026	NM_001128849.1	910	aCg/aTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81979815	81979815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	57	392	0	ENST00000359376.3:c.3517G>A	p.Glu1173Lys	p.E1173K	ENST00000359376	NM_002661.3	1173	Gag/Aag																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115284264	115284264	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	127	334	0	ENST00000438362.2:c.22T>C	p.Ser8Pro	p.S8P	ENST00000438362	NM_001242891.1	8	Tca/Cca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202977	16202977	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	178	419	2	ENST00000375759.3:c.685C>T	p.Arg229Ter	p.R229*	ENST00000375759	NM_015001.2	229	Cga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260609	16260609	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	227	474	0	ENST00000375759.3:c.7874T>C	p.Met2625Thr	p.M2625T	ENST00000375759	NM_015001.2	2625	aTg/aCg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175996783	175996783	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs766620891		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	157	393	0	ENST00000367669.3:c.1654A>G	p.Ile552Val	p.I552V	ENST00000367669	NM_022457.5	552	Att/Gtt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023119	27023120	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	123	333	0	ENST00000324856.7:c.229dup	p.Ala77GlyfsTer34	p.A77Gfs*34	ENST00000324856	NM_006015.4	75	-/G																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	164	513	2	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739054	46739055	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	160	381	0	ENST00000371975.4:c.1405dup	p.Glu469GlyfsTer20	p.E469Gfs*20	ENST00000371975	NM_003579.3	468	gtg/gtGg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743520	46743520	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141523334		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	160	427	0	ENST00000371975.4:c.1901G>A	p.Arg634His	p.R634H	ENST00000371975	NM_003579.3	634	cGt/cAt																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78428531	78428531	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	152	327	0	ENST00000370768.2:c.1268A>T	p.Asn423Ile	p.N423I	ENST00000370768	NM_003902.3	423	aAt/aTt																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279681	123279681	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	179	433	0	ENST00000358487.5:c.751C>T	p.Arg251Ter	p.R251*	ENST00000358487	NM_000141.4	251	Cga/Tga																																																																															
TET1	80312	MSKCC	GRCh37	10	70451422	70451422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	150	437	0	ENST00000373644.4:c.6262G>A	p.Ala2088Thr	p.A2088T	ENST00000373644	NM_030625.2	2088	Gct/Act																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100631	8100631	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767671768		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	187	488	0	ENST00000346208.3:c.605G>A	p.Arg202His	p.R202H	ENST00000346208		202	cGt/cAt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100727	8100728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs771019738		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	145	409	0	ENST00000346208.3:c.708dup	p.Ser237GlnfsTer66	p.S237Qfs*66	ENST00000346208		234	ttc/ttCc																																																																															
CBL	867	MSKCC	GRCh37	11	119145603	119145604	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	53	399	0	ENST00000264033.4:c.815dup	p.Leu272PhefsTer4	p.L272Ffs*4	ENST00000264033	NM_005188.3	270	gct/gcTt																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112888268	112888268	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	182	314	0	ENST00000351677.2:c.284T>A	p.Val95Asp	p.V95D	ENST00000351677	NM_002834.3	95	gTc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	119	273	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	155	367	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103504610	103504611	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	129	317	1	ENST00000355739.4:c.235dup	p.Asp79GlyfsTer23	p.D79Gfs*23	ENST00000355739	NM_000123.3	77	-/G																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907420	32907421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1253401667		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	160	398	1	ENST00000380152.3:c.1813dup	p.Ile605AsnfsTer11	p.I605Nfs*11	ENST00000380152		602	gga/ggAa																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36989319	36989319	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	141	344	0	ENST00000354822.5:c.16A>C	p.Ser6Arg	p.S6R	ENST00000354822	NM_001079668.2	6	Agt/Cgt																																																																															
MGA	23269	MSKCC	GRCh37	15	42028601	42028601	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376715603		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	194	516	0	ENST00000219905.7:c.4139G>A	p.Arg1380Gln	p.R1380Q	ENST00000219905	NM_001164273.1	1380	cGa/cAa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3645686	3645686	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769084265		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	169	379	0	ENST00000294008.3:c.1933G>A	p.Val645Met	p.V645M	ENST00000294008	NM_032444.2	645	Gtg/Atg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3799667	3799667	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	84	176	0	ENST00000262367.5:c.3797A>G	p.Gln1266Arg	p.Q1266R	ENST00000262367	NM_004380.2	1266	cAg/cGg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	203	433	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1400980130		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	166	419	0	ENST00000264010.4:c.2070del	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348565	89348566	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs886041521		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	180	447	0	ENST00000301030.4:c.4384dup	p.Arg1462LysfsTer92	p.R1462Kfs*92	ENST00000301030	NM_001256183.1	1462	aga/aAga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15973659	15973659	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183518783		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	191	441	0	ENST00000268712.3:c.4333C>T	p.Arg1445Cys	p.R1445C	ENST00000268712	NM_006311.3	1445	Cgt/Tgt																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40441470	40441470	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780375123		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	161	321	0	ENST00000345506.4:c.41C>T	p.Ala14Val	p.A14V	ENST00000345506	NM_003152.3	14	gCg/gTg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246605	41246605	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs80357050		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	197	442	0	ENST00000357654.3:c.943A>G	p.Arg315Gly	p.R315G	ENST00000357654	NM_007294.3	315	Agg/Ggg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs771001164		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	119	414	1	ENST00000307078.5:c.1214_1215del	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	156	381	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78681701	78681701	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	42	373	0	ENST00000306801.3:c.409T>G	p.Leu137Val	p.L137V	ENST00000306801	NM_020761.2	137	Tta/Gta																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78899231	78899231	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200514795		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	163	398	0	ENST00000306801.3:c.2870C>T	p.Thr957Met	p.T957M	ENST00000306801	NM_020761.2	957	aCg/aTg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39629569	39629569	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	97	239	0	ENST00000262039.4:c.2263G>T	p.Gly755Cys	p.G755C	ENST00000262039	NM_002647.2	755	Ggc/Tgc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376247	15376248	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs780128218		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	57	294	0	ENST00000263377.2:c.766dup	p.Gln256ProfsTer46	p.Q256Pfs*46	ENST00000263377	NM_058243.2	256	cag/cCag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223175	36223175	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	218	529	1	ENST00000222270.7:c.5730del	p.Arg1911AspfsTer23	p.R1911Dfs*23	ENST00000222270	NM_014727.1	1909	Ccc/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224111	36224111	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	124	235	0	ENST00000222270.7:c.6666del	p.Thr2223ProfsTer38	p.T2223Pfs*38	ENST00000222270	NM_014727.1	2221	Ccc/cc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906331	50906331	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371120096		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	157	390	0	ENST00000440232.2:c.992G>A	p.Arg331Gln	p.R331Q	ENST00000440232	NM_002691.3	331	cGg/cAg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906393	50906393	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762330164		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	184	447	0	ENST00000440232.2:c.1054C>T	p.Arg352Cys	p.R352C	ENST00000440232	NM_002691.3	352	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238958	5238958	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	146	455	0	ENST00000357368.4:c.1821del	p.Val608TrpfsTer30	p.V608Wfs*30	ENST00000357368	NM_002850.3	607	ccC/cc																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222386	6222386	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1490207666		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	79	299	0	ENST00000252674.7:c.856C>T	p.Arg286Trp	p.R286W	ENST00000252674	NM_005934.3	286	Cgg/Tgg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	138	408	3	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469530	25469530	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755744291		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	101	397	0	ENST00000264709.3:c.1238del	p.Gly413AlafsTer238	p.G413Afs*238	ENST00000264709	NM_175629.2	413	gGc/gc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017842	31017842	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1234538414		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	129	246	0	ENST00000375687.4:c.704G>A	p.Arg235Gln	p.R235Q	ENST00000375687	NM_015338.5	235	cGg/cAg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023424	31023424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	173	429	0	ENST00000375687.4:c.2909G>A	p.Ser970Asn	p.S970N	ENST00000375687	NM_015338.5	970	aGc/aAc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21351020	21351022	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-	rs762525437		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	159	435	0	ENST00000215739.8:c.2260_2262del	p.Asn754del	p.N754del	ENST00000215739	NM_006767.3	752	tACAac/tac																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445686	29445686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	172	459	0	ENST00000544604.2:c.1517G>A	p.Ser506Asn	p.S506N	ENST00000544604	NM_001206998.1	506	aGc/aAc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446697	29446697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	199	428	1	ENST00000544604.2:c.2528C>A	p.Pro843His	p.P843H	ENST00000544604	NM_001206998.1	843	cCc/cAc																																																																															
NF2	4771	MSKCC	GRCh37	22	30074204	30074204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	145	367	0	ENST00000338641.4:c.1466C>T	p.Ala489Val	p.A489V	ENST00000338641	NM_000268.3	489	gCa/gTa																																																																															
ATR	545	MSKCC	GRCh37	3	142217556	142217557	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1268253442		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	124	282	1	ENST00000350721.4:c.5440dup	p.Arg1814LysfsTer8	p.R1814Kfs*8	ENST00000350721	NM_001184.3	1814	aga/aAga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938932	178938932	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	68	153	0	ENST00000263967.3:c.2174A>G	p.Asp725Gly	p.D725G	ENST00000263967	NM_006218.2	725	gAt/gGt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	158	335	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	163	414	1	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259289	89259289	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	144	425	0	ENST00000336596.2:c.433A>G	p.Thr145Ala	p.T145A	ENST00000336596	NM_005233.5	145	Acc/Gcc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	195	449	1	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538269	187538269	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs748652484		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	134	334	1	ENST00000441802.2:c.8965del	p.Arg2989GlyfsTer20	p.R2989Gfs*20	ENST00000441802	NM_005245.3	2989	Agg/gg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541678	187541678	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	198	470	0	ENST00000441802.2:c.6062G>T	p.Arg2021Leu	p.R2021L	ENST00000441802	NM_005245.3	2021	cGc/cTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467373	66467373	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	128	390	0	ENST00000273854.3:c.896del	p.Asn299MetfsTer123	p.N299Mfs*123	ENST00000273854	NM_004439.5	299	aAt/at																																																																															
APC	324	MSKCC	GRCh37	5	112116544	112116545	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	116	313	0	ENST00000257430.4:c.591_592del	p.Arg197SerfsTer54	p.R197Sfs*54	ENST00000257430	NM_000038.5	197	AGa/a																																																																															
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	139	422	0	ENST00000257430.4:c.4393_4394dup	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																																																															
APC	324	MSKCC	GRCh37	5	112176210	112176210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	213	442	0	ENST00000257430.4:c.4919G>T	p.Arg1640Leu	p.R1640L	ENST00000257430	NM_000038.5	1640	cGg/cTg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564511	86564511	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	159	511	4	ENST00000274376.6:c.248del	p.Gly83GlufsTer4	p.G83Efs*4	ENST00000274376	NM_002890.2	81	ctG/ct																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910590	29910590	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	217	386	0	ENST00000376809.5:c.133del	p.Arg45AlafsTer32	p.R45Afs*32	ENST00000376809	NM_002116.7	44	Ccc/cc																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239639	31239639	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs281860320		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	50	173	0	ENST00000376228.5:c.80A>G	p.His27Arg	p.H27R	ENST00000376228	NM_002117.5	27	cAc/cGc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324861	31324861	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	209	424	0	ENST00000412585.2:c.73+2T>C		p.X25_splice	ENST00000412585	NM_005514.6	25																																																																																
HLA-B	3106	MSKCC	GRCh37	6	31324892	31324892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	108	368	0	ENST00000412585.2:c.44del	p.Ala15GlyfsTer5	p.A15Gfs*5	ENST00000412585	NM_005514.6	15	gCg/gg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818213	32818213	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs143800384		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	53	369	0	ENST00000354258.4:c.1312C>T	p.Arg438Ter	p.R438*	ENST00000354258	NM_000593.5	438	Cga/Tga																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821400	32821400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	179	424	0	ENST00000354258.4:c.194G>A	p.Arg65Lys	p.R65K	ENST00000354258	NM_000593.5	65	aGg/aAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	332	422	17	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346220	152346220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	177	411	5	ENST00000359321.1:c.350del	p.Leu117TrpfsTer17	p.L117Wfs*17	ENST00000359321	NM_005431.1	117	tTg/tg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2983971	2983971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	154	426	0	ENST00000396946.4:c.559C>T	p.Arg187Trp	p.R187W	ENST00000396946	NM_032415.4	187	Cgg/Tgg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141557618	141557618	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	185	404	0	ENST00000220592.5:c.1697A>C	p.Lys566Thr	p.K566T	ENST00000220592	NM_012154.3	566	aAg/aCg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739827	145739827	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	183	460	0	ENST00000428558.2:c.1703del	p.Lys568ArgfsTer10	p.K568Rfs*10	ENST00000428558	NM_004260.3	568	aAg/ag																																																																															
LYN	4067	MSKCC	GRCh37	8	56910996	56910996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	181	372	0	ENST00000519728.1:c.1142G>A	p.Cys381Tyr	p.C381Y	ENST00000519728	NM_002350.3	381	tGc/tAc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101908774	101908774	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs746666082		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	111	316	0	ENST00000374994.4:c.1138G>C	p.Ala380Pro	p.A380P	ENST00000374994	NM_004612.2	380	Gcc/Ccc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396278	139396278	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376689092		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	194	469	0	ENST00000277541.6:c.5560C>T	p.Arg1854Cys	p.R1854C	ENST00000277541	NM_017617.3	1854	Cgc/Tgc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8339017	8339017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	151	310	0	ENST00000356435.5:c.5284C>T	p.Arg1762Trp	p.R1762W	ENST00000356435		1762	Cgg/Tgg																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20153873	20153873	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	99	172	0	ENST00000379607.5:c.187G>T	p.Gly63Ter	p.G63*	ENST00000379607	NM_001412.3	63	Gga/Tga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038508	47038508	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781804786		P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	123	367	0	ENST00000329236.7:c.439G>A	p.Val147Ile	p.V147I	ENST00000329236	NM_001204466.1	147	Gtc/Atc																																																																															
MED12	9968	MSKCC	GRCh37	X	70344872	70344872	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	142	390	0	ENST00000374080.3:c.2102C>A	p.Pro701His	p.P701H	ENST00000374080		701	cCt/cAt																																																																															
ATRX	546	MSKCC	GRCh37	X	76776957	76776957	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	95	316	0	ENST00000373344.5:c.6995G>T	p.Arg2332Ile	p.R2332I	ENST00000373344	NM_000489.3	2332	aGa/aTa																																																																															
ATRX	546	MSKCC	GRCh37	X	76849253	76849253	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	176	329	0	ENST00000373344.5:c.6023A>G	p.Asp2008Gly	p.D2008G	ENST00000373344	NM_000489.3	2008	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0073647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	53	276	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0073647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	143	283	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577077	7577078	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	232	559	0	ENST00000269305.4:c.860dup	p.Asn288GlufsTer18	p.N288Efs*18	ENST00000269305	NM_001126112.2	287	gag/gaAg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161688	47161688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	37	357	0	ENST00000409792.3:c.4438G>T	p.Val1480Phe	p.V1480F	ENST00000409792	NM_014159.6	1480	Gtt/Ttt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16235893	16235893	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	68	407	0	ENST00000375759.3:c.959C>G	p.Ser320Cys	p.S320C	ENST00000375759	NM_015001.2	320	tCc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112175149	112175150	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0073647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	142	447	0	ENST00000257430.4:c.3860_3861dup	p.Gly1288Ter	p.G1288*	ENST00000257430	NM_000038.5	1286	-/AT																																																																															
TP53	7157	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0073665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	271	281	0	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175232	112175232	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	199	337	0	ENST00000257430.4:c.3942del	p.Arg1314SerfsTer7	p.R1314Sfs*7	ENST00000257430	NM_000038.5	1314	aGg/ag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72833967	72833967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	18	255	0	ENST00000268489.5:c.3926G>A	p.Arg1309Gln	p.R1309Q	ENST00000268489	NM_006885.3	1309	cGa/cAa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981825	70981825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	71	331	0	ENST00000276594.2:c.271G>A	p.Asp91Asn	p.D91N	ENST00000276594	NM_024504.3	91	Gat/Aat																																																																															
SMO	6608	MSKCC	GRCh37	7	128848609	128848610	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs754335556		P-0073665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	102	295	0	ENST00000249373.3:c.1276_1277del	p.Leu426ValfsTer13	p.L426Vfs*13	ENST00000249373	NM_005631.4	425	aCT/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0073681-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			136	103	276	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
CBL	867	MSKCC	GRCh37	11	119103164	119103164	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730880429		P-0073681-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	84	282	0	ENST00000264033.4:c.202C>T	p.Arg68Trp	p.R68W	ENST00000264033	NM_005188.3	68	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175349	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0073681-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			146	114	259	0	ENST00000257430.4:c.4057_4058del	p.Glu1353IlefsTer21	p.E1353Ifs*21	ENST00000257430	NM_000038.5	1353	GAa/a																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510307	187510307	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073681-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			223	29	233	0	ENST00000441802.2:c.13206C>G	p.Asn4402Lys	p.N4402K	ENST00000441802	NM_005245.3	4402	aaC/aaG																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165740	118165740	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073681-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	106	345	0	ENST00000369448.3:c.250A>G	p.Asn84Asp	p.N84D	ENST00000369448	NM_017709.3	84	Aat/Gat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519997		P-0073688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	207	404	0	ENST00000269305.4:c.332T>C	p.Leu111Pro	p.L111P	ENST00000269305	NM_001126112.2	111	cTg/cCg																																																																															
B2M	567	MSKCC	GRCh37	15	45003746	45003746	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0073688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	115	332	0	ENST00000558401.1:c.2T>A	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	aTg/aAg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156834153	156834153	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754562899		P-0073688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	170	402	0	ENST00000524377.1:c.220G>A	p.Glu74Lys	p.E74K	ENST00000524377	NM_002529.3	74	Gag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877115	151877115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	148	369	0	ENST00000262189.6:c.7246C>T	p.His2416Tyr	p.H2416Y	ENST00000262189	NM_170606.2	2416	Cat/Tat																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881440	37881440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	2222	444	5	ENST00000269571.5:c.2632C>T	p.His878Tyr	p.H878Y	ENST00000269571		878	Cat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs864622237		P-0073691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	110	358	1	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac																																																																															
APC	324	MSKCC	GRCh37	5	112175377	112175378	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0073691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	62	339	0	ENST00000257430.4:c.4090dup	p.Ser1364LysfsTer11	p.S1364Kfs*11	ENST00000257430	NM_000038.5	1362	-/A																																																																															
APC	324	MSKCC	GRCh37	5	112174144	112174144	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0073691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	69	367	0	ENST00000257430.4:c.2853T>G	p.Tyr951Ter	p.Y951*	ENST00000257430	NM_000038.5	951	taT/taG																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43738986	43738986	+	start_lost	Translation_Start_Site	SNP	G	G	C			P-0073691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	105	456	1	ENST00000523873.1:c.3G>C	p.Met1?	p.M1?	ENST00000523873		1	atG/atC																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31395665	31395665	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1182001726		P-0073697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			866	302	396	0	ENST00000328111.2:c.2518C>T	p.Arg840Ter	p.R840*	ENST00000328111	NM_006892.3	840	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604789	48604789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	182	348	0	ENST00000342988.3:c.1611C>A	p.Asp537Glu	p.D537E	ENST00000342988	NM_005359.5	537	gaC/gaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0073697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	74	224	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554046	63554047	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TCTTCATTCAAGGTGGGGAGATAGCCACACACGACCTTTAG			P-0073697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1055	305	392	0	ENST00000307078.5:c.652_692dup	p.Glu231AspfsTer2	p.E231Dfs*2	ENST00000307078	NM_004655.3	231	gaa/gaCTAAAGGTCGTGTGTGGCTATCTCCCCACCTTGAATGAAGAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579448	7579449	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0073697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	241	477	0	ENST00000269305.4:c.237_238dup	p.Pro80LeufsTer44	p.P80Lfs*44	ENST00000269305	NM_001126112.2	80	cct/cTCct																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0073698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	122	392	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663423	227663423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747368142		P-0073698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	56	334	0	ENST00000305123.5:c.32C>T	p.Ser11Leu	p.S11L	ENST00000305123	NM_005544.2	11	tCg/tTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790114	40790114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	35	446	0	ENST00000373198.4:c.2617G>A	p.Asp873Asn	p.D873N	ENST00000373198	NM_133170.3	873	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7576883	7576883	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	64	511	0	ENST00000269305.4:c.963del	p.Lys321AsnfsTer24	p.K321Nfs*24	ENST00000269305	NM_001126112.2	321	aaA/aa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52668619	52668619	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0073698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	53	333	0	ENST00000394830.3:c.1300C>T	p.Arg434Ter	p.R434*	ENST00000394830	NM_018313.4	434	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0073698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	32	284	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TET2	54790	MSKCC	GRCh37	4	106156748	106156748	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769376786		P-0073698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	69	419	1	ENST00000380013.4:c.1649G>A	p.Arg550Gln	p.R550Q	ENST00000380013	NM_001127208.2	550	cGa/cAa																																																																															
PARP1	142	MSKCC	GRCh37	1	226567763	226567763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	68	498	0	ENST00000366794.5:c.1403G>A	p.Ser468Asn	p.S468N	ENST00000366794	NM_001618.3	468	aGc/aAc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44941882	44941883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	59	168	0	ENST00000377967.4:c.3207dup	p.Asn1070Ter	p.N1070*	ENST00000377967	NM_021140.2	1069	gat/gaTt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481627	56481627	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1429784531		P-0073783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	206	398	0	ENST00000267101.3:c.662C>T	p.Pro221Leu	p.P221L	ENST00000267101	NM_001982.3	221	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	153	317	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579504	7579505	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCTGGACC			P-0073783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	190	446	0	ENST00000269305.4:c.175_182dup	p.Asp61GlufsTer65	p.D61Efs*65	ENST00000269305	NM_001126112.2	61	gat/gaGGTCCAGAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023372	27023381	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGTCGCCG	GCCGTCGCCG	-			P-0073783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			67	126	233	1	ENST00000324856.7:c.478_487del	p.Ala160ProfsTer69	p.A160Pfs*69	ENST00000324856	NM_006015.4	160	GCCGTCGCCGcc/cc																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0073824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	31	157	4	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
ATM	472	MSKCC	GRCh37	11	108115594	108115594	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs730881336		P-0073824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	198	402	0	ENST00000278616.4:c.742C>T	p.Arg248Ter	p.R248*	ENST00000278616	NM_000051.3	248	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120318	70120318	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs80338688		P-0073824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	284	503	0	ENST00000245479.2:c.1320C>A	p.Tyr440Ter	p.Y440*	ENST00000245479	NM_000346.3	440	taC/taA																																																																															
APC	324	MSKCC	GRCh37	5	112164653	112164654	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	196	367	0	ENST00000257430.4:c.1730dup	p.Leu577PhefsTer4	p.L577Ffs*4	ENST00000257430	NM_000038.5	576	gct/gcTt																																																																															
CIC	23152	MSKCC	GRCh37	19	42794035	42794035	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	18	398	0	ENST00000575354.2:c.1396A>C	p.Lys466Gln	p.K466Q	ENST00000575354	NM_015125.3	466	Aag/Cag																																																																															
RRAS	6237	MSKCC	GRCh37	19	50138894	50138894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	95	548	0	ENST00000246792.3:c.596C>T	p.Pro199Leu	p.P199L	ENST00000246792	NM_006270.3	199	cCa/cTa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255902	16255902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	33	548	0	ENST00000375759.3:c.3167G>A	p.Arg1056Lys	p.R1056K	ENST00000375759	NM_015001.2	1056	aGa/aAa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66218774	66218774	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	71	215	0	ENST00000273854.3:c.2284G>C	p.Asp762His	p.D762H	ENST00000273854	NM_004439.5	762	Gat/Cat																																																																															
BCOR	54880	MSKCC	GRCh37	X	39930385	39930385	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0073826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	116	356	0	ENST00000378444.4:c.3079G>T	p.Glu1027Ter	p.E1027*	ENST00000378444	NM_001123385.1	1027	Gag/Tag																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149495426	149495426	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	159	360	0	ENST00000261799.4:c.3221C>A	p.Pro1074His	p.P1074H	ENST00000261799	NM_002609.3	1074	cCc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0073826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	104	231	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056119	26056119	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	134	368	0	ENST00000343677.2:c.538G>C	p.Ala180Pro	p.A180P	ENST00000343677	NM_005319.3	180	Gcg/Ccg																																																																															
MGA	23269	MSKCC	GRCh37	15	41989043	41989044	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0073826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	134	330	2	ENST00000219905.7:c.1840dup	p.Arg614LysfsTer11	p.R614Kfs*11	ENST00000219905	NM_001164273.1	612	gga/ggAa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599866	10599866	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0073826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	245	342	1	ENST00000171111.5:c.1708+2T>G		p.X570_splice	ENST00000171111	NM_203500.1	570																																																																																
NTRK1	4914	MSKCC	GRCh37	1	156849017	156849017	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	115	375	0	ENST00000524377.1:c.1909G>T	p.Gly637Trp	p.G637W	ENST00000524377	NM_002529.3	637	Ggg/Tgg																																																																															
AR	367	MSKCC	GRCh37	X	66766346	66766347	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0073826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	64	176	1	ENST00000374690.3:c.1359_1360del	p.Gly455TrpfsTer46	p.G455Wfs*46	ENST00000374690	NM_000044.3	453	gGT/g																																																																															
AR	367	MSKCC	GRCh37	X	66766055	66766055	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	143	383	3	ENST00000374690.3:c.1067C>A	p.Ala356Glu	p.A356E	ENST00000374690	NM_000044.3	356	gCa/gAa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31386396	31386396	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	120	336	0	ENST00000328111.2:c.1621G>T	p.Asp541Tyr	p.D541Y	ENST00000328111	NM_006892.3	541	Gac/Tac																																																																															
PMS1	5378	MSKCC	GRCh37	2	190660615	190660615	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	110	286	1	ENST00000441310.2:c.253G>T	p.Glu85Ter	p.E85*	ENST00000441310	NM_000534.4	85	Gaa/Taa																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625376	69625376	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	136	359	0	ENST00000334134.2:c.417T>G	p.Ser139Arg	p.S139R	ENST00000334134	NM_005247.2	139	agT/agG																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937226	36937226	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	136	355	0	ENST00000361632.4:c.1093A>T	p.Ser365Cys	p.S365C	ENST00000361632		365	Agc/Tgc																																																																															
BARD1	580	MSKCC	GRCh37	2	215610488	215610488	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	111	283	0	ENST00000260947.4:c.1768G>C	p.Val590Leu	p.V590L	ENST00000260947	NM_000465.2	590	Gta/Cta																																																																															
ABL1	25	MSKCC	GRCh37	9	133738378	133738378	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	129	345	0	ENST00000318560.5:c.778G>T	p.Val260Leu	p.V260L	ENST00000318560	NM_005157.4	260	Gtg/Ttg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460366	149460366	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	120	310	0	ENST00000286301.3:c.271C>A	p.Leu91Met	p.L91M	ENST00000286301	NM_005211.3	91	Ctg/Atg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056284	27056284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745637145		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	155	359	0	ENST00000324856.7:c.1280C>T	p.Pro427Leu	p.P427L	ENST00000324856	NM_006015.4	427	cCg/cTg																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	37	291	1	ENST00000262741.5:c.883del	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																															
ATM	472	MSKCC	GRCh37	11	108168029	108168029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	70	209	0	ENST00000278616.4:c.4925G>T	p.Gly1642Val	p.G1642V	ENST00000278616	NM_000051.3	1642	gGg/gTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344554	118344554	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	107	385	0	ENST00000534358.1:c.2684del	p.Lys895ArgfsTer54	p.K895Rfs*54	ENST00000534358	NM_005933.3	894	Aaa/aa																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154862	2154862	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369844466		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	107	366	0	ENST00000434045.2:c.359G>A	p.Arg120His	p.R120H	ENST00000434045	NM_001127598.1	120	cGt/cAt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856469	111856469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	62	350	0	ENST00000341259.2:c.520G>A	p.Ala174Thr	p.A174T	ENST00000341259	NM_005475.2	174	Gcc/Acc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	93	326	0	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																															
POLE	5426	MSKCC	GRCh37	12	133225573	133225573	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369171111		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	117	378	1	ENST00000320574.5:c.4091G>A	p.Arg1364His	p.R1364H	ENST00000320574	NM_006231.2	1364	cGt/cAt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	92	296	4	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865076	57865076	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462976482		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	115	355	0	ENST00000228682.2:c.2557del	p.Gln853SerfsTer93	p.Q853Sfs*93	ENST00000228682	NM_005269.2	851	taC/ta																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	50	275	0	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937348	32937348	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80359035		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	110	252	0	ENST00000380152.3:c.8009C>T	p.Ser2670Leu	p.S2670L	ENST00000380152		2670	tCg/tTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42054395	42054396	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	123	325	0	ENST00000219905.7:c.7585dup	p.Arg2529LysfsTer9	p.R2529Kfs*9	ENST00000219905	NM_001164273.1	2527	caa/cAaa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43707894	43707894	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767106305		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	116	325	1	ENST00000382044.4:c.4987C>T	p.Arg1663Cys	p.R1663C	ENST00000382044	NM_001141980.1	1663	Cgt/Tgt																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	112	343	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
B2M	567	MSKCC	GRCh37	15	45007814	45007814	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	54	320	0	ENST00000558401.1:c.261C>A	p.Tyr87Ter	p.Y87*	ENST00000558401	NM_004048.2	87	taC/taA																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	120	414	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276310	15276310	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369768722		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	43	293	0	ENST00000263388.2:c.5684G>A	p.Arg1895His	p.R1895H	ENST00000263388	NM_000435.2	1895	cGc/cAc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226257	2226257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	54	375	0	ENST00000398665.3:c.3737C>T	p.Ser1246Leu	p.S1246L	ENST00000398665	NM_032482.2	1246	tCg/tTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	150	397	0	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424741	47424741	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	125	331	0	ENST00000404338.3:c.2814del	p.Phe938LeufsTer10	p.F938Lfs*10	ENST00000404338	NM_004491.4	937	Ttt/tt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905585	50905585	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs553342844		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	154	461	0	ENST00000440232.2:c.713C>T	p.Thr238Met	p.T238M	ENST00000440232	NM_002691.3	238	aCg/aTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	96	359	1	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	65	292	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519946		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	64	381	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
INSR	3643	MSKCC	GRCh37	19	7170599	7170599	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs556950372		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	96	309	0	ENST00000302850.5:c.1432C>T	p.Arg478Cys	p.R478C	ENST00000302850	NM_000208.2	478	Cgc/Tgc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	155	344	1	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
INHA	3623	MSKCC	GRCh37	2	220437288	220437288	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1476801115		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	96	333	0	ENST00000243786.2:c.197del	p.Gly66AlafsTer61	p.G66Afs*61	ENST00000243786	NM_002191.3	64	ctG/ct																																																																															
ALK	238	MSKCC	GRCh37	2	29451784	29451784	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772809305		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	37	115	0	ENST00000389048.3:c.2781del	p.Cys928AlafsTer11	p.C928Afs*11	ENST00000389048	NM_004304.4	927	ggG/gg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	57	354	3	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
REL	5966	MSKCC	GRCh37	2	61147185	61147185	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1408969857		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	56	231	0	ENST00000295025.8:c.863G>A	p.Gly288Asp	p.G288D	ENST00000295025	NM_002908.2	288	gGc/gAc																																																																															
REL	5966	MSKCC	GRCh37	2	61149655	61149656	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	92	232	0	ENST00000295025.8:c.1851dup	p.Gln618SerfsTer8	p.Q618Sfs*8	ENST00000295025	NM_002908.2	615	-/T																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40828002	40828002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	105	320	0	ENST00000373198.4:c.2426C>T	p.Thr809Ile	p.T809I	ENST00000373198	NM_133170.3	809	aCc/aTc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920337	134920337	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141607080		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	104	369	0	ENST00000398015.3:c.2152G>A	p.Val718Met	p.V718M	ENST00000398015	NM_004441.4	718	Gtg/Atg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	72	132	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	122	305	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439175	52439175	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1192490528		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	140	368	0	ENST00000460680.1:c.1067G>A	p.Arg356Gln	p.R356Q	ENST00000460680	NM_004656.3	356	cGg/cAg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	115	378	1	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	77	295	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169116	32169116	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1263727065		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	63	363	0	ENST00000375023.3:c.3917del	p.Pro1306GlnfsTer3	p.P1306Qfs*3	ENST00000375023	NM_004557.3	1306	cCa/ca																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	112	242	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	103	219	2	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128201270	128201270	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	109	321	0	ENST00000265960.3:c.1465C>T	p.Arg489Ter	p.R489*	ENST00000265960	NM_001006617.1	489	Cga/Tga																																																																															
ABL1	25	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	90	256	0	ENST00000318560.5:c.2352del	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933445	39933445	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1177018779		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	73	404	0	ENST00000378444.4:c.1154C>T	p.Ala385Val	p.A385V	ENST00000378444	NM_001123385.1	385	gCg/gTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933594	39933594	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	55	422	0	ENST00000378444.4:c.1005del	p.Ser336ArgfsTer42	p.S336Rfs*42	ENST00000378444	NM_001123385.1	335	ccC/cc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922890	44922890	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141353229		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	73	309	0	ENST00000377967.4:c.1751C>T	p.Thr584Met	p.T584M	ENST00000377967	NM_021140.2	584	aCg/aTg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	49	420	0	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
MED12	9968	MSKCC	GRCh37	X	70344009	70344009	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs772155788		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	67	253	1	ENST00000374080.3:c.1745C>T	p.Thr582Met	p.T582M	ENST00000374080		582	aCg/aTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258284	16258284	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			771	72	370	0	ENST00000375759.3:c.5553del	p.Lys1851AsnfsTer18	p.K1851Nfs*18	ENST00000375759	NM_015001.2	1850	gAa/ga																																																																															
AKT3	10000	MSKCC	GRCh37	1	244006466	244006466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	66	233	0	ENST00000263826.5:c.7G>A	p.Asp3Asn	p.D3N	ENST00000263826	NM_005465.4	3	Gat/Aat																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72163730	72163730	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	79	279	0	ENST00000357731.5:c.628T>C	p.Ser210Pro	p.S210P	ENST00000357731	NM_173808.2	210	Tca/Cca																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780858	9780858	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	87	321	0	ENST00000377346.4:c.1580A>G	p.Glu527Gly	p.E527G	ENST00000377346	NM_005026.3	527	gAg/gGg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100354	8100354	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	98	437	0	ENST00000346208.3:c.328T>C	p.Ser110Pro	p.S110P	ENST00000346208		110	Tcc/Ccc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741871	17741871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	66	236	1	ENST00000250003.3:c.542C>T	p.Pro181Leu	p.P181L	ENST00000250003	NM_002478.4	181	cCg/cTg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127981	64127981	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	72	381	0	ENST00000334205.4:c.379C>A	p.Leu127Ile	p.L127I	ENST00000334205	NM_003942.2	127	Ctc/Atc																																																																															
SETD8	387893	MSKCC	GRCh37	12	123875225	123875225	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	47	84	0	ENST00000330479.4:c.181A>G	p.Asn61Asp	p.N61D	ENST00000330479	NM_020382.3	61	Aac/Gac																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514898	103514898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	113	365	0	ENST00000355739.4:c.1399C>T	p.Pro467Ser	p.P467S	ENST00000355739	NM_000123.3	467	Ccc/Tcc																																																																															
USP8	9101	MSKCC	GRCh37	15	50786410	50786411	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	125	282	0	ENST00000307179.4:c.2592_2593del	p.Tyr864Ter	p.Y864*	ENST00000307179		864	tAC/t																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99460101	99460101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	57	249	0	ENST00000268035.6:c.2197C>T	p.Pro733Ser	p.P733S	ENST00000268035	NM_000875.3	733	Ccc/Tcc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640564	3640564	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	147	433	0	ENST00000294008.3:c.3075G>A	p.Trp1025Ter	p.W1025*	ENST00000294008	NM_032444.2	1025	tgG/tgA																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830382	72830382	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	24	334	0	ENST00000268489.5:c.6199T>C	p.Ser2067Pro	p.S2067P	ENST00000268489	NM_006885.3	2067	Tca/Cca																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244103	41244103	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	132	371	0	ENST00000357654.3:c.3445A>G	p.Thr1149Ala	p.T1149A	ENST00000357654	NM_007294.3	1149	Aca/Gca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435162	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	120	414	3	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/gGgt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138573	11138573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	40	315	0	ENST00000344626.4:c.3329C>T	p.Thr1110Ile	p.T1110I	ENST00000344626	NM_003072.3	1110	aCc/aTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15295747	15295747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	123	348	0	ENST00000263388.2:c.2380C>T	p.Pro794Ser	p.P794S	ENST00000263388	NM_000435.2	794	Cct/Tct																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350240	15350240	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	44	343	0	ENST00000263377.2:c.3539A>G	p.Gln1180Arg	p.Q1180R	ENST00000263377	NM_058243.2	1180	cAg/cGg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217835	2217835	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1315147414		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	90	333	0	ENST00000398665.3:c.2609C>T	p.Pro870Leu	p.P870L	ENST00000398665	NM_032482.2	870	cCg/cTg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4117622	4117622	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	89	271	0	ENST00000262948.5:c.98A>G	p.Asn33Ser	p.N33S	ENST00000262948	NM_030662.3	33	aAc/aGc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637272	47637272	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	47	300	0	ENST00000233146.2:c.406T>C	p.Phe136Leu	p.F136L	ENST00000233146	NM_000251.2	136	Ttt/Ctt																																																																															
VHL	7428	MSKCC	GRCh37	3	10183728	10183728	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	18	297	0	ENST00000256474.2:c.197T>C	p.Val66Ala	p.V66A	ENST00000256474	NM_000551.3	66	gTg/gCg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098439	47098439	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs201453289		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	40	339	0	ENST00000409792.3:c.6835T>C	p.Ser2279Pro	p.S2279P	ENST00000409792	NM_014159.6	2279	Tct/Cct																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541207	187541207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	116	382	0	ENST00000441802.2:c.6533C>T	p.Ala2178Val	p.A2178V	ENST00000441802	NM_005245.3	2178	gCc/gTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628646	187628646	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	73	394	0	ENST00000441802.2:c.2336C>A	p.Pro779His	p.P779H	ENST00000441802	NM_005245.3	779	cCt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628651	187628652	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	68	399	0	ENST00000441802.2:c.2330dup	p.Leu777PhefsTer5	p.L777Ffs*5	ENST00000441802	NM_005245.3	777	tta/ttTa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180051050	180051050	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	107	311	0	ENST00000261937.6:c.1433A>G	p.Gln478Arg	p.Q478R	ENST00000261937	NM_182925.4	478	cAg/cGg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753361	57753361	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	118	325	0	ENST00000274289.3:c.763C>T	p.Gln255Ter	p.Q255*	ENST00000274289	NM_006622.3	255	Caa/Taa																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045823	26045823	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			736	55	499	0	ENST00000540144.1:c.185T>C	p.Leu62Pro	p.L62P	ENST00000540144	NM_003531.2	62	cTg/cCg																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271605	26271605	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753112584		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	75	373	0	ENST00000305910.3:c.8G>A	p.Arg3His	p.R3H	ENST00000305910	NM_003534.2	3	cGc/cAc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32813448	32813448	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771945026		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	101	314	0	ENST00000354258.4:c.2335G>A	p.Ala779Thr	p.A779T	ENST00000354258	NM_000593.5	779	Gct/Act																																																																															
EGFR	1956	MSKCC	GRCh37	7	55233000	55233000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	53	307	0	ENST00000275493.2:c.1750C>A	p.His584Asn	p.H584N	ENST00000275493	NM_005228.3	584	Cac/Aac																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38186988	38186988	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	44	300	0	ENST00000317025.8:c.1489A>G	p.Met497Val	p.M497V	ENST00000317025	NM_023034.1	497	Atg/Gtg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396472	139396472	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	139	356	0	ENST00000277541.6:c.5453T>C	p.Leu1818Pro	p.L1818P	ENST00000277541	NM_017617.3	1818	cTg/cCg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123211909	123211909	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	107	445	0	ENST00000218089.9:c.2775+1G>T		p.X925_splice	ENST00000218089	NM_001042749.1	925																																																																																
MED12	9968	MSKCC	GRCh37	X	70356380	70356380	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1164631851		P-0073875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	62	379	0	ENST00000374080.3:c.5275C>T	p.Pro1759Ser	p.P1759S	ENST00000374080		1759	Cct/Tct																																																																															
CDK8	1024	MSKCC	GRCh37	13	26967567	26967567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	486	473	0	ENST00000381527.3:c.710G>A	p.Arg237Gln	p.R237Q	ENST00000381527	NM_001260.1	237	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578448	7578448	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1064795691		P-0073876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	346	705	0	ENST00000269305.4:c.482C>A	p.Ala161Asp	p.A161D	ENST00000269305	NM_001126112.2	161	gCc/gAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604766	48604766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs377767377		P-0073876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	261	567	0	ENST00000342988.3:c.1588del	p.His530ThrfsTer7	p.H530Tfs*7	ENST00000342988	NM_005359.5	530	Cac/ac																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522416	176522416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519792		P-0073876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	265	636	0	ENST00000292408.4:c.1605C>A	p.Asn535Lys	p.N535K	ENST00000292408	NM_213647.1	535	aaC/aaA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692981	89692981	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0073876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	202	491	0	ENST00000371953.3:c.465T>A	p.Tyr155Ter	p.Y155*	ENST00000371953	NM_000314.4	155	taT/taA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692984	89692985	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0073876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	202	485	0	ENST00000371953.3:c.468_469insA	p.Glu157ArgfsTer23	p.E157Rfs*23	ENST00000371953	NM_000314.4	156	-/A																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028684	12028684	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	211	482	0	ENST00000353533.5:c.887C>A	p.Thr296Lys	p.T296K	ENST00000353533	NM_003010.3	296	aCa/aAa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63537665	63537667	+	frameshift_variant	Frame_Shift_Ins	INS	GAA	GAA	TTTC			P-0073876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	389	484	1	ENST00000307078.5:c.965_967delinsGAAA	p.Ile322ArgfsTer9	p.I322Rfs*9	ENST00000307078	NM_004655.3	322	aTTCct/aGAAAct																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468498	89468498	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	243	572	1	ENST00000336596.2:c.2032G>C	p.Asp678His	p.D678H	ENST00000336596	NM_005233.5	678	Gac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0073891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	446	416	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0073891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	530	392	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165140	47165140	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs540015912		P-0073891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	118	356	0	ENST00000409792.3:c.986G>A	p.Arg329Gln	p.R329Q	ENST00000409792	NM_014159.6	329	cGg/cAg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45871913	45871913	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913020		P-0073891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			758	49	361	0	ENST00000391945.4:c.335G>A	p.Arg112His	p.R112H	ENST00000391945	NM_000400.3	112	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0073891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	330	250	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0074015-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	196	254	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47684730	47684730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074015-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	131	290	0	ENST00000347630.2:c.719G>A	p.Arg240Gln	p.R240Q	ENST00000347630	NM_001007230.1	240	cGa/cAa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099406	157099426	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAGCAA	CAGCAGCAGCAGCAGCAGCAA	-	rs775084783		P-0074015-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	71	495	0	ENST00000346085.5:c.363_383del	p.Gln125_Gln131del	p.Q125_Q131del	ENST00000346085	NM_020732.3	115	CAGCAGCAGCAGCAGCAGCAA/-																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604689	48604689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074015-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	161	461	0	ENST00000342988.3:c.1511G>T	p.Ser504Ile	p.S504I	ENST00000342988	NM_005359.5	504	aGt/aTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265567	41266214	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	CTCAAGGTTTGTGTCATTAAATCTTTAGTTACTGAATTGGGGCTCTGCTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTT	CTCAAGGTTTGTGTCATTAAATCTTTAGTTACTGAATTGGGGCTCTGCTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTT	-			P-0074015-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	225	236	0	ENST00000349496.5:c.12_215del		p.X4_splice	ENST00000349496	NM_001904.3	4	aCTCAAGGTTTGTGTCATTAAATCTTTAGTTACTGAATTGGGGCTCTGCTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTct/act																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2086877	2086877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074015-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	171	371	0	ENST00000349721.2:c.2575C>T	p.His859Tyr	p.H859Y	ENST00000349721	NM_003070.3	859	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0074081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	155	263	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925316	114925317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769592153		P-0074081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	139	192	6	ENST00000543371.1:c.1403dup	p.Cys469ValfsTer8	p.C469Vfs*8	ENST00000543371	NM_001198531.1	465	aga/agAa																																																																															
APC	324	MSKCC	GRCh37	5	112175225	112175225	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0074081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	197	283	0	ENST00000257430.4:c.3934G>T	p.Gly1312Ter	p.G1312*	ENST00000257430	NM_000038.5	1312	Gga/Tga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288765	15288765	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1317504991		P-0074081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	44	216	0	ENST00000263388.2:c.3974G>A	p.Arg1325His	p.R1325H	ENST00000263388	NM_000435.2	1325	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445404	49445404	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371076182		P-0074081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	137	409	0	ENST00000301067.7:c.2062C>T	p.Arg688Cys	p.R688C	ENST00000301067	NM_003482.3	688	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584567	48584568	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0074081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	18	381	0	ENST00000342988.3:c.740_741insT	p.Gln248ThrfsTer16	p.Q248Tfs*16	ENST00000342988	NM_005359.5	247	gga/ggTa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933955	39933955	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074081-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	159	149	0	ENST00000378444.4:c.644T>A	p.Leu215Gln	p.L215Q	ENST00000378444	NM_001123385.1	215	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519985		P-0074097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	286	601	0	ENST00000269305.4:c.857A>G	p.Glu286Gly	p.E286G	ENST00000269305	NM_001126112.2	286	gAa/gGa																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0074097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	58	205	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175322	112175322	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0074097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	122	455	0	ENST00000257430.4:c.4031C>A	p.Ser1344Ter	p.S1344*	ENST00000257430	NM_000038.5	1344	tCa/tAa																																																																															
TET2	54790	MSKCC	GRCh37	4	106164866	106164866	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	74	417	0	ENST00000380013.4:c.3734A>G	p.Tyr1245Cys	p.Y1245C	ENST00000380013	NM_001127208.2	1245	tAc/tGc																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936017	150936017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	100	518	0	ENST00000271640.5:c.3469C>T	p.Arg1157Cys	p.R1157C	ENST00000271640	NM_001145415.1	1157	Cgt/Tgt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939885	71939885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	111	675	0	ENST00000298229.2:c.512C>A	p.Ala171Asp	p.A171D	ENST00000298229	NM_001567.3	171	gCt/gAt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526774	31526774	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200906186		P-0074097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	76	355	0	ENST00000344624.3:c.266C>T	p.Ala89Val	p.A89V	ENST00000344624		89	gCg/gTg																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733379	85733379	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0074097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	88	480	0	ENST00000370580.1:c.633A>C	p.Glu211Asp	p.E211D	ENST00000370580	NM_003921.4	211	gaA/gaC																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0074143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			54	8	533	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21620051	21620051	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750829854		P-0074143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			73	10	445	0	ENST00000382592.4:c.115G>A	p.Ala39Thr	p.A39T	ENST00000382592	NM_014572.2	39	Gca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0074143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			36	16	318	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0074161-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	59	257	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0074161-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	65	234	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0074161-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	22	179	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133853	55133853	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074161-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	33	211	0	ENST00000257290.5:c.1066C>G	p.Leu356Val	p.L356V	ENST00000257290	NM_006206.4	356	Ctg/Gtg																																																																															
YAP1	10413	MSKCC	GRCh37	11	102076740	102076740	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	115	339	0	ENST00000282441.5:c.919C>T	p.Arg307Ter	p.R307*	ENST00000282441	NM_001130145.2	307	Cga/Tga																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	115	495	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435202	18435202	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	83	374	0	ENST00000266497.5:c.192del	p.Phe64LeufsTer15	p.F64Lfs*15	ENST00000266497		63	Ttt/tt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447842	49447842	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1280814073		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	136	378	0	ENST00000301067.7:c.592G>A	p.Ala198Thr	p.A198T	ENST00000301067	NM_003482.3	198	Gcg/Acg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864466	57864466	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367789336		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	144	408	0	ENST00000228682.2:c.1943G>A	p.Arg648His	p.R648H	ENST00000228682	NM_005269.2	648	cGt/cAt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987154	36987154	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs575848748		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	118	356	0	ENST00000354822.5:c.535G>A	p.Val179Met	p.V179M	ENST00000354822	NM_001079668.2	179	Gtg/Atg																																																																															
CDH1	999	MSKCC	GRCh37	16	68771347	68771348	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs1312011708		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	60	229	0	ENST00000261769.5:c.44_46dup	p.Leu15dup	p.L15dup	ENST00000261769	NM_004360.3	15	gcg/gcGCTg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016675	12016675	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	78	356	0	ENST00000353533.5:c.811G>A	p.Ala271Thr	p.A271T	ENST00000353533	NM_003010.3	271	Gca/Aca																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686962	37686962	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	110	315	0	ENST00000447079.4:c.3871del	p.Gln1291ArgfsTer3	p.Q1291Rfs*3	ENST00000447079	NM_015083.1	1289	gCc/gc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	287	536	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533517	63533517	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	112	398	2	ENST00000307078.5:c.1637del	p.Gly546AlafsTer143	p.G546Afs*143	ENST00000307078	NM_004655.3	546	gGc/gc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117790	70117790	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	142	478	0	ENST00000245479.2:c.258G>A	p.Trp86Ter	p.W86*	ENST00000245479	NM_000346.3	86	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	17	349	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229533	5229533	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1259120475		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	91	342	0	ENST00000357368.4:c.2318G>A	p.Arg773His	p.R773H	ENST00000357368	NM_002850.3	773	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	35	125	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
INSR	3643	MSKCC	GRCh37	19	7143057	7143057	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773661946		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	123	395	0	ENST00000302850.5:c.2312C>T	p.Thr771Met	p.T771M	ENST00000302850	NM_000208.2	771	aCg/aTg																																																																															
BARD1	580	MSKCC	GRCh37	2	215646085	215646085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	90	340	1	ENST00000260947.4:c.513del	p.Asp172MetfsTer40	p.D172Mfs*40	ENST00000260947	NM_000465.2	171	aaA/aa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	117	390	5	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																															
ATR	545	MSKCC	GRCh37	3	142215250	142215250	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs758234545		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	95	228	0	ENST00000350721.4:c.5851C>T	p.Arg1951Ter	p.R1951*	ENST00000350721	NM_001184.3	1951	Cga/Tga																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998128	169998128	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs753143066		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	78	311	3	ENST00000295797.4:c.826del	p.Thr276GlnfsTer7	p.T276Qfs*7	ENST00000295797	NM_002740.5	273	ttA/tt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	189	373	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936350	49936350	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767408780		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	183	518	0	ENST00000296474.3:c.1498C>T	p.Arg500Trp	p.R500W	ENST00000296474	NM_002447.2	500	Cgg/Tgg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440866	52440866	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1220529268		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	74	426	0	ENST00000460680.1:c.638G>A	p.Arg213His	p.R213H	ENST00000460680	NM_004656.3	213	cGt/cAt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52588798	52588798	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	99	375	0	ENST00000394830.3:c.4230del	p.Pro1411LeufsTer21	p.P1411Lfs*21	ENST00000394830	NM_018313.4	1410	ggG/gg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143226689	143226689	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs149208667		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	77	300	0	ENST00000262992.4:c.425G>A	p.Arg142Gln	p.R142Q	ENST00000262992	NM_001101669.1	142	cGa/cAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	8	325	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521299	187521299	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1166479124		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	108	417	3	ENST00000441802.2:c.11856del	p.Phe3952LeufsTer31	p.F3952Lfs*31	ENST00000441802	NM_005245.3	3952	ttT/tt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56152429	56152429	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs747333403		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	98	302	0	ENST00000399503.3:c.485G>A	p.Arg162His	p.R162H	ENST00000399503	NM_005921.1	162	cGt/cAt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161689	56161689	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1490957244		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	98	310	0	ENST00000399503.3:c.1186C>T	p.Arg396Cys	p.R396C	ENST00000399503	NM_005921.1	396	Cgt/Tgt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	168	266	0	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323200	31323201	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	134	488	0	ENST00000412585.2:c.788_789del	p.Arg263AsnfsTer25	p.R263Nfs*25	ENST00000412585	NM_005514.6	263	aGA/a																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323266	31323266	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	77	232	0	ENST00000412585.2:c.723G>A	p.Trp241Ter	p.W241*	ENST00000412585	NM_005514.6	241	tgG/tgA																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	81	263	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390836	139390836	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746280413		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	148	463	1	ENST00000277541.6:c.7355C>T	p.Ala2452Val	p.A2452V	ENST00000277541	NM_017617.3	2452	gCg/gTg																																																																															
GATA1	2623	MSKCC	GRCh37	X	48649611	48649611	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	91	444	0	ENST00000376670.3:c.95T>G	p.Val32Gly	p.V32G	ENST00000376670	NM_002049.3	32	gTt/gGt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846192	156846192	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1199030190		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	96	387	0	ENST00000524377.1:c.1633G>A	p.Ala545Thr	p.A545T	ENST00000524377	NM_002529.3	545	Gca/Aca																																																																															
GNB1	2782	MSKCC	GRCh37	1	1735941	1735941	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	120	353	0	ENST00000378609.4:c.347G>T	p.Gly116Val	p.G116V	ENST00000378609	NM_002074.3	116	gGc/gTc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206653215	206653215	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	151	477	0	ENST00000367120.3:c.1186G>A	p.Ala396Thr	p.A396T	ENST00000367120	NM_014002.3	396	Gct/Act																																																																															
PGR	5241	MSKCC	GRCh37	11	100909976	100909976	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	82	298	1	ENST00000325455.5:c.2673C>A	p.Cys891Ter	p.C891*	ENST00000325455	NM_001202474.3	891	tgC/tgA																																																																															
POLE	5426	MSKCC	GRCh37	12	133226345	133226345	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs879255392		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	107	404	0	ENST00000320574.5:c.3713G>T	p.Ser1238Ile	p.S1238I	ENST00000320574	NM_006231.2	1238	aGc/aTc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103520583	103520583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	77	264	0	ENST00000355739.4:c.2654G>A	p.Gly885Asp	p.G885D	ENST00000355739	NM_000123.3	885	gGc/gAc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609819	81609819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	131	430	0	ENST00000298171.2:c.1417G>A	p.Val473Ile	p.V473I	ENST00000298171	NM_000369.2	473	Gta/Ata																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560460	95560460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	99	384	0	ENST00000343455.3:c.5129C>T	p.Ala1710Val	p.A1710V	ENST00000343455	NM_177438.2	1710	gCg/gTg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50815169	50815169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	85	303	0	ENST00000398568.2:c.1522G>A	p.Ala508Thr	p.A508T	ENST00000398568	NM_001042412.1	508	Gca/Aca																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37871704	37871704	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	29	485	0	ENST00000269571.5:c.1228C>A	p.Leu410Ile	p.L410I	ENST00000269571		410	Cta/Ata																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298742	15298742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	102	380	0	ENST00000263388.2:c.1556G>A	p.Gly519Asp	p.G519D	ENST00000263388	NM_000435.2	519	gGc/gAc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313385	30313385	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	119	361	0	ENST00000262643.3:c.985A>G	p.Lys329Glu	p.K329E	ENST00000262643	NM_001238.2	329	Aag/Gag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212522497	212522497	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	90	341	0	ENST00000342788.4:c.1928C>A	p.Thr643Asn	p.T643N	ENST00000342788	NM_005235.2	643	aCt/aAt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39222377	39222377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	46	327	0	ENST00000402219.2:c.3233C>A	p.Ser1078Tyr	p.S1078Y	ENST00000402219	NM_005633.3	1078	tCt/tAt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202800	128202800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	130	431	0	ENST00000341105.2:c.920G>A	p.Arg307Gln	p.R307Q	ENST00000341105	NM_032638.4	307	cGg/cAg																																																																															
GAB1	2549	MSKCC	GRCh37	4	144361313	144361313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	117	408	0	ENST00000262994.4:c.1363C>T	p.Pro455Ser	p.P455S	ENST00000262994	NM_002039.3	455	Cca/Tca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557863	187557863	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	135	407	0	ENST00000441802.2:c.3848C>A	p.Pro1283His	p.P1283H	ENST00000441802	NM_005245.3	1283	cCc/cAc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294757	1294757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	120	446	0	ENST00000310581.5:c.244G>A	p.Ala82Thr	p.A82T	ENST00000310581	NM_198253.2	82	Gcc/Acc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460372	149460372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	119	343	0	ENST00000286301.3:c.265G>T	p.Asp89Tyr	p.D89Y	ENST00000286301	NM_005211.3	89	Gac/Tac																																																																															
NSD1	64324	MSKCC	GRCh37	5	176662937	176662937	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	113	264	0	ENST00000439151.2:c.3912G>T	p.Gln1304His	p.Q1304H	ENST00000439151	NM_022455.4	1304	caG/caT																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31401628	31401628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	69	257	0	ENST00000344624.3:c.4036C>T	p.Arg1346Trp	p.R1346W	ENST00000344624		1346	Cgg/Tgg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672801	86672801	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	91	331	0	ENST00000274376.6:c.2291del	p.Lys764SerfsTer10	p.K764Sfs*10	ENST00000274376	NM_002890.2	763	gAa/ga																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910386	29910386	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	152	504	1	ENST00000376809.5:c.56T>C	p.Leu19Pro	p.L19P	ENST00000376809	NM_002116.7	19	cTg/cCg																																																																															
POT1	25913	MSKCC	GRCh37	7	124491979	124491979	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs913532816		P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	44	261	0	ENST00000357628.3:c.896C>T	p.Ala299Val	p.A299V	ENST00000357628	NM_015450.2	299	gCc/gTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140507790	140507790	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	68	266	0	ENST00000288602.6:c.681G>T	p.Leu227Phe	p.L227F	ENST00000288602	NM_004333.4	227	ttG/ttT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69005892	69005892	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	95	328	0	ENST00000288368.4:c.2303T>C	p.Leu768Pro	p.L768P	ENST00000288368	NM_024870.2	768	cTt/cCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0074251-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	69	417	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0074251-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	28	245	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117888	70117888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074251-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	33	338	1	ENST00000245479.2:c.356C>T	p.Ala119Val	p.A119V	ENST00000245479	NM_000346.3	119	gCg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101238	27101239	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0074251-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	67	398	0	ENST00000324856.7:c.4520_4521del	p.Asn1507IlefsTer24	p.N1507Ifs*24	ENST00000324856	NM_006015.4	1507	aAT/a																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14020599	14020600	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0074251-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	45	271	0	ENST00000311895.7:c.571dup	p.Tyr191LeufsTer20	p.Y191Lfs*20	ENST00000311895	NM_005236.2	190	-/T																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149441346	149441346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs960200814		P-0074251-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	58	360	0	ENST00000286301.3:c.1693G>A	p.Asp565Asn	p.D565N	ENST00000286301	NM_005211.3	565	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579483	7579484	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0074265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	110	309	0	ENST00000269305.4:c.203_204del	p.Glu68GlyfsTer80	p.E68Gfs*80	ENST00000269305	NM_001126112.2	68	gAG/g																																																																															
APC	324	MSKCC	GRCh37	5	112174835	112174835	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0074265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	25	261	0	ENST00000257430.4:c.3544A>T	p.Lys1182Ter	p.K1182*	ENST00000257430	NM_000038.5	1182	Aaa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268138	153268138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1406877044		P-0074265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	168	245	0	ENST00000281708.4:c.670C>T	p.Arg224Ter	p.R224*	ENST00000281708	NM_033632.3	224	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174973	112174973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0074265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	89	241	0	ENST00000257430.4:c.3682C>T	p.Gln1228Ter	p.Q1228*	ENST00000257430	NM_000038.5	1228	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0074265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	49	192	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0074267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	105	226	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0074267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	57	193	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913294		P-0074267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	87	166	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112174086	112174086	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs878853432		P-0074267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	20	243	0	ENST00000257430.4:c.2795C>G	p.Ser932Ter	p.S932*	ENST00000257430	NM_000038.5	932	tCa/tGa																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0074267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	60	206	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0074267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	97	172	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374696	149374696	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1231267072		P-0074267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	16	194	0	ENST00000360632.3:c.398C>T	p.Thr133Ile	p.T133I	ENST00000360632	NM_015472.4	133	aCc/aTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8517910	8517910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	35	219	0	ENST00000356435.5:c.1481C>T	p.Ala494Val	p.A494V	ENST00000356435		494	gCt/gTt																																																																															
EP300	2033	MSKCC	GRCh37	22	41574612	41574612	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	25	280	0	ENST00000263253.7:c.6899del	p.Pro2300LeufsTer53	p.P2300Lfs*53	ENST00000263253	NM_001429.3	2299	atC/at																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106042	8106042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	49	545	0	ENST00000346208.3:c.862G>A	p.Gly288Arg	p.G288R	ENST00000346208		288	Ggg/Agg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0074298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	172	342	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0074298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			72	406	435	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519841		P-0074298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	103	416	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039612	47039612	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0074298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	141	472	0	ENST00000329236.7:c.830A>T	p.Glu277Val	p.E277V	ENST00000329236	NM_001204466.1	277	gAg/gTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132411	11132411	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	170	615	0	ENST00000344626.4:c.2627A>T	p.Lys876Met	p.K876M	ENST00000344626	NM_003072.3	876	aAg/aTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0074374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	18	203	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0074374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	71	336	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0074374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	52	207	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856469	111856469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	72	406	0	ENST00000341259.2:c.520G>A	p.Ala174Thr	p.A174T	ENST00000341259	NM_005475.2	174	Gcc/Acc																																																																															
INHA	3623	MSKCC	GRCh37	2	220439553	220439553	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1184216895		P-0074374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	62	416	0	ENST00000243786.2:c.406G>A	p.Gly136Arg	p.G136R	ENST00000243786	NM_002191.3	136	Ggg/Agg																																																																															
APC	324	MSKCC	GRCh37	5	112176192	112176192	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370433763		P-0074374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	71	385	0	ENST00000257430.4:c.4901C>T	p.Pro1634Leu	p.P1634L	ENST00000257430	NM_000038.5	1634	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0074374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	119	245	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43773159	43773159	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	167	370	0	ENST00000382044.4:c.433del	p.Glu145AsnfsTer59	p.E145Nfs*59	ENST00000382044	NM_001141980.1	145	Gaa/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0074375-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	69	188	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0074375-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	111	255	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998898	11998898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074375-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	131	255	0	ENST00000353533.5:c.400C>T	p.Arg134Trp	p.R134W	ENST00000353533	NM_003010.3	134	Cgg/Tgg																																																																															
ABL1	25	MSKCC	GRCh37	9	133760529	133760529	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371656033		P-0074375-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	52	346	0	ENST00000318560.5:c.2852C>T	p.Pro951Leu	p.P951L	ENST00000318560	NM_005157.4	951	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579315	7579339	+	frameshift_variant	Frame_Shift_Del	DEL	GCAAGTCACAGACTTGGCTGTCCCA	GCAAGTCACAGACTTGGCTGTCCCA	-			P-0074375-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	111	294	0	ENST00000269305.4:c.348_372del	p.Gly117ArgfsTer45	p.G117Rfs*45	ENST00000269305	NM_001126112.2	116	tcTGGGACAGCCAAGTCTGTGACTTGC/tc																																																																															
EP300	2033	MSKCC	GRCh37	22	41537080	41537080	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074375-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	72	279	0	ENST00000263253.7:c.1907A>G	p.Lys636Arg	p.K636R	ENST00000263253	NM_001429.3	636	aAa/aGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0074391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	182	304	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0074391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	129	309	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174043	112174043	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0074391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	149	306	0	ENST00000257430.4:c.2752G>T	p.Glu918Ter	p.E918*	ENST00000257430	NM_000038.5	918	Gag/Tag																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538913	23538913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	169	262	0	ENST00000380871.4:c.526C>T	p.Arg176Cys	p.R176C	ENST00000380871	NM_006167.3	176	Cgc/Tgc																																																																															
TEK	7010	MSKCC	GRCh37	9	27228229	27228229	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757379347		P-0074391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	70	212	0	ENST00000380036.4:c.3226C>T	p.Arg1076Trp	p.R1076W	ENST00000380036	NM_000459.3	1076	Cgg/Tgg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99442757	99442757	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1484576897		P-0074391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	59	290	0	ENST00000268035.6:c.1154C>T	p.Thr385Met	p.T385M	ENST00000268035	NM_000875.3	385	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0074391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	140	233	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260780	16260780	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	221	411	0	ENST00000375759.3:c.8045T>C	p.Leu2682Ser	p.L2682S	ENST00000375759	NM_015001.2	2682	tTg/tCg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18716374	18716374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074392-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	88	305	0	ENST00000266497.5:c.3721C>A	p.Gln1241Lys	p.Q1241K	ENST00000266497		1241	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0074392-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	107	242	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0074392-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	225	271	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15965560	15965560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074392-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	104	307	0	ENST00000268712.3:c.5246G>A	p.Gly1749Asp	p.G1749D	ENST00000268712	NM_006311.3	1749	gGc/gAc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969884	81969884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199840870		P-0074403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	124	529	0	ENST00000359376.3:c.2953G>A	p.Val985Ile	p.V985I	ENST00000359376	NM_002661.3	985	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0074403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	308	604	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1294433	1294433	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377016753		P-0074403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	35	730	0	ENST00000310581.5:c.568G>A	p.Ala190Thr	p.A190T	ENST00000310581	NM_198253.2	190	Gct/Act																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118377315	118377315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	198	438	1	ENST00000534358.1:c.10708G>T	p.Ala3570Ser	p.A3570S	ENST00000534358	NM_005933.3	3570	Gca/Tca																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357477	89357477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	81	556	2	ENST00000301030.4:c.341G>A	p.Arg114His	p.R114H	ENST00000301030	NM_001256183.1	114	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0074470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	62	205	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0074470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	39	293	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210778	5210778	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374377699		P-0074470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	26	298	0	ENST00000357368.4:c.5273C>T	p.Ala1758Val	p.A1758V	ENST00000357368	NM_002850.3	1758	gCg/gTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70404693	70404693	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756914683		P-0074470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	35	269	0	ENST00000373644.4:c.2207C>T	p.Ser736Leu	p.S736L	ENST00000373644	NM_030625.2	736	tCg/tTg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610081	81610081	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	38	310	0	ENST00000298171.2:c.1679T>A	p.Ile560Lys	p.I560K	ENST00000298171	NM_000369.2	560	aTa/aAa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348043	348043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	53	294	0	ENST00000262320.3:c.1463G>A	p.Gly488Glu	p.G488E	ENST00000262320	NM_003502.3	488	gGg/gAg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	71873142	71873142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074470-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	36	218	0	ENST00000357731.5:c.1052C>T	p.Ala351Val	p.A351V	ENST00000357731	NM_173808.2	351	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0074481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	160	342	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0074481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	146	288	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194823	29194823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	58	315	0	ENST00000240100.2:c.905G>A	p.Arg302Lys	p.R302K	ENST00000240100	NM_001394.6	302	aGg/aAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0074481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	80	166	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004918	16004919	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0074481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	134	287	0	ENST00000268712.3:c.2335dup	p.Ser779LysfsTer8	p.S779Kfs*8	ENST00000268712	NM_006311.3	779	agt/aAgt																																																																															
APC	324	MSKCC	GRCh37	5	112175271	112175272	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0074481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	56	315	0	ENST00000257430.4:c.3981_3982insAA	p.Gln1328AsnfsTer88	p.Q1328Nfs*88	ENST00000257430	NM_000038.5	1327	tca/tcAAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786202962		P-0074519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	167	571	1	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112175349	112175350	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0074519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	128	508	0	ENST00000257430.4:c.4058_4059del	p.Glu1353ValfsTer21	p.E1353Vfs*21	ENST00000257430	NM_000038.5	1353	gAA/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0074519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	40	352	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391147	89391147	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	30	483	0	ENST00000336596.2:c.1213T>A	p.Tyr405Asn	p.Y405N	ENST00000336596	NM_005233.5	405	Tac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0074520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	327	562	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0074520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	143	379	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591826	48591826	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs281875324		P-0074520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	10	327	0	ENST00000342988.3:c.989A>C	p.Glu330Ala	p.E330A	ENST00000342988	NM_005359.5	330	gAa/gCa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198272802	198272802	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745511585		P-0074520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	158	306	0	ENST00000335508.6:c.1159C>T	p.Arg387Trp	p.R387W	ENST00000335508	NM_012433.2	387	Cgg/Tgg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94068120	94068120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1056840976		P-0074520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	266	280	0	ENST00000369303.4:c.842G>A	p.Arg281His	p.R281H	ENST00000369303	NM_004440.3	281	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112151277	112151278	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0074520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	93	292	0	ENST00000257430.4:c.921dup	p.Leu308SerfsTer19	p.L308Sfs*19	ENST00000257430	NM_000038.5	307	cat/caTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0074522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	66	530	1	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739756	41739756	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762653354		P-0074522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	42	358	0	ENST00000242208.4:c.217G>A	p.Asp73Asn	p.D73N	ENST00000242208	NM_002192.2	73	Gat/Aat																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88659788	88659789	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0074522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	24	246	1	ENST00000372037.3:c.441dup	p.Asp148Ter	p.D148*	ENST00000372037	NM_004329.2	145	-/T																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043905	180043905	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0074522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	31	339	0	ENST00000261937.6:c.3091C>T	p.Arg1031Ter	p.R1031*	ENST00000261937	NM_182925.4	1031	Cga/Tga																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515356	103515356	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	42	387	0	ENST00000355739.4:c.1857A>T	p.Gln619His	p.Q619H	ENST00000355739	NM_000123.3	619	caA/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0074524-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	209	550	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117868	70117868	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1407667250		P-0074524-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	203	547	1	ENST00000245479.2:c.336C>A	p.Phe112Leu	p.F112L	ENST00000245479	NM_000346.3	112	ttC/ttA																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117308	115117308	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0074524-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	154	381	1	ENST00000257566.3:c.864+2T>C		p.X288_splice	ENST00000257566	NM_016569.3	288																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0074524-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	99	284	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265955	41266414	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTG	TTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTG	-			P-0074524-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	170	222	0	ENST00000349496.5:c.14-62_242-31del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
FLT4	2324	MSKCC	GRCh37	5	180050991	180050991	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766166148		P-0074524-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	192	506	1	ENST00000261937.6:c.1492G>A	p.Val498Met	p.V498M	ENST00000261937	NM_182925.4	498	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0074538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	156	270	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0074538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	190	386	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0074538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	67	207	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0074538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	78	326	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98224200	98224200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	59	305	0	ENST00000331920.6:c.2641G>A	p.Val881Ile	p.V881I	ENST00000331920	NM_000264.3	881	Gtc/Atc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029144	14029144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	70	387	0	ENST00000311895.7:c.1355A>G	p.Lys452Arg	p.K452R	ENST00000311895	NM_005236.2	452	aAa/aGa																																																																															
APC	324	MSKCC	GRCh37	5	112157650	112157650	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs1060503333		P-0074543-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	57	193	0	ENST00000257430.4:c.1370C>G	p.Ser457Ter	p.S457*	ENST00000257430	NM_000038.5	457	tCa/tGa																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0074543-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	36	283	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473779	67473779	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs387906850		P-0074543-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	79	168	0	ENST00000327367.4:c.859C>T	p.Arg287Trp	p.R287W	ENST00000327367	NM_005902.3	287	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0074543-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	109	305	0	ENST00000269305.4:c.991del	p.Gln331ArgfsTer14	p.Q331Rfs*14	ENST00000269305	NM_001126112.2	331	Cag/ag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290256	15290256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074543-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	44	295	0	ENST00000263388.2:c.3379G>A	p.Ala1127Thr	p.A1127T	ENST00000263388	NM_000435.2	1127	Gcc/Acc																																																																															
KLF5	688	MSKCC	GRCh37	13	73636657	73636657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074545-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	233	527	0	ENST00000377687.4:c.920C>T	p.Ser307Leu	p.S307L	ENST00000377687	NM_001730.3	307	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0074545-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	128	347	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877349	40877349	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747289224		P-0074545-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	147	367	0	ENST00000373198.4:c.2347G>A	p.Val783Met	p.V783M	ENST00000373198	NM_133170.3	783	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0074545-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	109	261	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074545-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	124	332	0	ENST00000257430.4:c.4063del	p.Ser1355LeufsTer60	p.S1355Lfs*60	ENST00000257430	NM_000038.5	1354	Ttt/tt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	94	276	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0074549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	95	399	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057520005		P-0074549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	98	408	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591889	48591889	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1060500741		P-0074549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	40	419	0	ENST00000342988.3:c.1052A>T	p.Asp351Val	p.D351V	ENST00000342988	NM_005359.5	351	gAt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112157627	112157628	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0074549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	81	265	0	ENST00000257430.4:c.1354_1355del	p.Val452SerfsTer7	p.V452Sfs*7	ENST00000257430	NM_000038.5	449	gcTGtg/gctg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68939478	68939478	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139157434		P-0074549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	64	270	0	ENST00000288368.4:c.463C>T	p.Arg155Trp	p.R155W	ENST00000288368	NM_024870.2	155	Cgg/Tgg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422176	81422176	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758059665		P-0074549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	72	410	0	ENST00000298171.2:c.152C>T	p.Pro51Leu	p.P51L	ENST00000298171	NM_000369.2	51	cCg/cTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120062	70120062	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	147	354	0	ENST00000245479.2:c.1067del	p.Pro356ArgfsTer27	p.P356Rfs*27	ENST00000245479	NM_000346.3	355	gCc/gc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410156	139410156	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs560030759		P-0074549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	30	367	0	ENST00000277541.6:c.1682C>T	p.Thr561Met	p.T561M	ENST00000277541	NM_017617.3	561	aCg/aTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008078	29008078	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	118	377	0	ENST00000282397.4:c.691G>C	p.Asp231His	p.D231H	ENST00000282397	NM_002019.4	231	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0074580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	114	282	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0074580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	73	368	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	152	373	0	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101904835	101904835	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	67	273	0	ENST00000374994.4:c.823C>G	p.Gln275Glu	p.Q275E	ENST00000374994	NM_004612.2	275	Cag/Gag																																																																															
ALK	238	MSKCC	GRCh37	2	29551305	29551305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	236	377	0	ENST00000389048.3:c.1325C>T	p.Thr442Ile	p.T442I	ENST00000389048	NM_004304.4	442	aCt/aTt																																																																															
APC	324	MSKCC	GRCh37	5	112173650	112173650	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0074580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	58	325	0	ENST00000257430.4:c.2359del	p.Ser787ValfsTer33	p.S787Vfs*33	ENST00000257430	NM_000038.5	787	Agt/gt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391213	89391213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	66	324	0	ENST00000336596.2:c.1279G>A	p.Ala427Thr	p.A427T	ENST00000336596	NM_005233.5	427	Gcg/Acg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528581	89528581	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	48	290	0	ENST00000336596.2:c.2881C>G	p.Pro961Ala	p.P961A	ENST00000336596	NM_005233.5	961	Cca/Gca																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45856534	45856534	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	63	318	0	ENST00000391945.4:c.1724C>G	p.Ala575Gly	p.A575G	ENST00000391945	NM_000400.3	575	gCc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0074597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	215	302	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0074597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	121	310	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2227019	2227019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	76	342	0	ENST00000398665.3:c.4499C>G	p.Ser1500Cys	p.S1500C	ENST00000398665	NM_032482.2	1500	tCt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112164584	112164584	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs863225318		P-0074597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	51	293	0	ENST00000257430.4:c.1658G>A	p.Trp553Ter	p.W553*	ENST00000257430	NM_000038.5	553	tGg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0074597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	147	242	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646222	3646222	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371325486		P-0074597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	89	297	0	ENST00000294008.3:c.1856C>T	p.Ala619Val	p.A619V	ENST00000294008	NM_032444.2	619	gCg/gTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42000041	42000051	+	frameshift_variant	Frame_Shift_Del	DEL	CAACCCTGCCT	CAACCCTGCCT	-			P-0074597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	83	289	0	ENST00000219905.7:c.2305_2315del	p.Asn769SerfsTer2	p.N769Sfs*2	ENST00000219905	NM_001164273.1	768	acCAACCCTGCCTct/acct																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337632	73337632	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			949	90	326	0	ENST00000377767.4:c.2084C>G	p.Pro695Arg	p.P695R	ENST00000377767	NM_014953.3	695	cCt/cGt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912127	114912128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0074597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	97	299	0	ENST00000543371.1:c.1198dup	p.Tyr400LeufsTer23	p.Y400Lfs*23	ENST00000543371	NM_001198531.1	399	-/T																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221273	36221273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			815	113	415	0	ENST00000222270.7:c.5107C>T	p.Leu1703Phe	p.L1703F	ENST00000222270	NM_014727.1	1703	Ctc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0074610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	220	326	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
KDR	3791	MSKCC	GRCh37	4	55981462	55981462	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs545112274		P-0074610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	62	256	0	ENST00000263923.4:c.475G>A	p.Val159Met	p.V159M	ENST00000263923	NM_002253.2	159	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0074610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	192	369	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909698	50909698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	146	444	0	ENST00000440232.2:c.1418C>T	p.Thr473Met	p.T473M	ENST00000440232	NM_002691.3	473	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0074610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	76	277	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485394	57485394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	119	342	0	ENST00000371085.3:c.976C>T	p.Pro326Ser	p.P326S	ENST00000371085	NM_000516.4	326	Ccc/Tcc																																																																															
ATRX	546	MSKCC	GRCh37	X	76939435	76939435	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0074610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	74	205	0	ENST00000373344.5:c.1313A>C	p.Lys438Thr	p.K438T	ENST00000373344	NM_000489.3	438	aAg/aCg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277841	41277841	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0074610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	119	346	0	ENST00000349496.5:c.1805T>C	p.Leu602Pro	p.L602P	ENST00000349496	NM_001904.3	602	cTg/cCg																																																																															
ERF	2077	MSKCC	GRCh37	19	42754052	42754052	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0074610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	155	384	0	ENST00000222329.4:c.300A>C	p.Lys100Asn	p.K100N	ENST00000222329	NM_006494.2	100	aaA/aaC																																																																															
EP300	2033	MSKCC	GRCh37	22	41536152	41536152	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	46	272	0	ENST00000263253.7:c.1769C>A	p.Ala590Asp	p.A590D	ENST00000263253	NM_001429.3	590	gCc/gAc																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839831	27839831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			843	288	610	0	ENST00000328488.2:c.263C>T	p.Ser88Leu	p.S88L	ENST00000328488	NM_003533.2	88	tCg/tTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903781	114903781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	103	313	0	ENST00000543371.1:c.785C>T	p.Pro262Leu	p.P262L	ENST00000543371	NM_001198531.1	262	cCa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0074627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			83	152	342	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175191	112175192	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0074627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	110	356	0	ENST00000257430.4:c.3901dup	p.Thr1301AsnfsTer14	p.T1301Nfs*14	ENST00000257430	NM_000038.5	1300	-/A																																																																															
JAK1	3716	MSKCC	GRCh37	1	65312353	65312353	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375353661		P-0074627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	77	380	0	ENST00000342505.4:c.1966G>A	p.Val656Ile	p.V656I	ENST00000342505	NM_002227.2	656	Gtc/Atc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210925	36210925	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs531663002		P-0074627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	75	421	0	ENST00000222270.7:c.676C>T	p.Arg226Trp	p.R226W	ENST00000222270	NM_014727.1	226	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219742	36219742	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	72	385	0	ENST00000222270.7:c.4639G>C	p.Glu1547Gln	p.E1547Q	ENST00000222270	NM_014727.1	1547	Gaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578196	7578196	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	142	342	0	ENST00000269305.4:c.653T>A	p.Val218Glu	p.V218E	ENST00000269305	NM_001126112.2	218	gTg/gAg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913250		P-0074631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	119	259	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038909	12038909	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	117	281	0	ENST00000396373.4:c.1202A>G	p.Tyr401Cys	p.Y401C	ENST00000396373	NM_001987.4	401	tAc/tGc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508490	106508490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	88	230	0	ENST00000359195.3:c.484G>A	p.Val162Ile	p.V162I	ENST00000359195	NM_002649.2	162	Gtc/Atc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912156	114912157	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0074631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	115	260	0	ENST00000543371.1:c.1227_1228dup	p.His410LeufsTer82	p.H410Lfs*82	ENST00000543371	NM_001198531.1	409	ctt/ctTCt																																																																															
APC	324	MSKCC	GRCh37	5	112175159	112175159	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0074631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	189	318	0	ENST00000257430.4:c.3869del	p.Asn1290IlefsTer15	p.N1290Ifs*15	ENST00000257430	NM_000038.5	1290	Aat/at																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185190902	185190902	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	130	377	0	ENST00000265026.3:c.1783A>T	p.Ser595Cys	p.S595C	ENST00000265026	NM_004721.4	595	Agc/Tgc																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936742	150936742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	156	354	0	ENST00000271640.5:c.3778G>A	p.Glu1260Lys	p.E1260K	ENST00000271640	NM_001145415.1	1260	Gaa/Aaa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176666813	176666813	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	118	296	0	ENST00000439151.2:c.4249G>T	p.Asp1417Tyr	p.D1417Y	ENST00000439151	NM_022455.4	1417	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578371	7578371	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs776167460		P-0074872-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			160	11	368	0	ENST00000269305.4:c.559G>A	p.Gly187Ser	p.G187S	ENST00000269305	NM_001126112.2	187	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0074989-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			286	307	345	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
BTK	695	MSKCC	GRCh37	X	100613425	100613426	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0074989-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			465	89	318	0	ENST00000308731.7:c.975-1_975delinsTT		p.X325_splice	ENST00000308731	NM_000061.2	325																																																																																
BRIP1	83990	MSKCC	GRCh37	17	59861773	59861773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074989-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	166	174	0	ENST00000259008.2:c.1486G>T	p.Ala496Ser	p.A496S	ENST00000259008	NM_032043.2	496	Gct/Tct																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920386	134920387	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0074989-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			433	231	287	0	ENST00000398015.3:c.2203dup	p.Leu735ProfsTer3	p.L735Pfs*3	ENST00000398015	NM_004441.4	734	tac/taCc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902404	1902404	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074989-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			185	216	221	0	ENST00000382895.3:c.23G>T	p.Ser8Ile	p.S8I	ENST00000382895	NM_133330.2	8	aGt/aTt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060992	38061010	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGGCTGGCGGCGGGCCC	GGGGGCTGGCGGCGGGCCC	-			P-0075095-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			611	18	339	0	ENST00000250448.2:c.979_997del	p.Gly327ArgfsTer17	p.G327Rfs*17	ENST00000250448	NM_004496.3	327	GGGCCCGCCGCCAGCCCCCag/ag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256190	16256190	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0075095-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			378	122	435	0	ENST00000375759.3:c.3455C>G	p.Ser1152Ter	p.S1152*	ENST00000375759	NM_015001.2	1152	tCa/tGa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696448	47696448	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075095-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	116	378	0	ENST00000347630.2:c.375T>A	p.Phe125Leu	p.F125L	ENST00000347630	NM_001007230.1	125	ttT/ttA																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80430614	80430614	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075095-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			113	23	77	0	ENST00000286548.4:c.394A>G	p.Ile132Val	p.I132V	ENST00000286548	NM_002072.3	132	Ata/Gta																																																																															
ATM	472	MSKCC	GRCh37	11	108141874	108141874	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587781558		P-0075249-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	127	221	0	ENST00000278616.4:c.2921+1G>A		p.X974_splice	ENST00000278616	NM_000051.3	974																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0075249-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	117	202	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981564	201981568	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGA	GGTGA	-			P-0075249-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	99	238	0	ENST00000359651.3:c.478+1_478+5del		p.X160_splice	ENST00000359651		160																																																																																
ATM	472	MSKCC	GRCh37	11	108192138	108192138	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075249-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	239	213	0	ENST00000278616.4:c.6566del	p.Phe2189SerfsTer46	p.F2189Sfs*46	ENST00000278616	NM_000051.3	2188	cTt/ct																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402842	20402842	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767441139		P-0075249-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	80	207	0	ENST00000346618.3:c.379G>A	p.Gly127Ser	p.G127S	ENST00000346618	NM_001949.4	127	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0075340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	80	383	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157222599	157222599	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	59	398	0	ENST00000346085.5:c.1867del	p.Leu623SerfsTer45	p.L623Sfs*45	ENST00000346085	NM_020732.3	622	caC/ca																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060897	38060897	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	131	392	0	ENST00000250448.2:c.1092del	p.Ala366ArgfsTer23	p.A366Rfs*23	ENST00000250448	NM_004496.3	364	ccC/cc																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020958	26020958	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs746056479		P-0075340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			750	98	491	0	ENST00000357647.3:c.241A>G	p.Thr81Ala	p.T81A	ENST00000357647	NM_003529.2	81	Aca/Gca																																																																															
ATM	472	MSKCC	GRCh37	11	108192065	108192065	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1317619286		P-0075362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			20	160	393	0	ENST00000278616.4:c.6490G>A	p.Glu2164Lys	p.E2164K	ENST00000278616	NM_000051.3	2164	Gag/Aag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285221	212285221	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1169528920		P-0075362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			203	130	473	0	ENST00000342788.4:c.3080C>T	p.Ala1027Val	p.A1027V	ENST00000342788	NM_005235.2	1027	gCt/gTt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061223	38061223	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			350	184	463	0	ENST00000250448.2:c.766A>G	p.Asn256Asp	p.N256D	ENST00000250448	NM_004496.3	256	Aac/Gac																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852416	63852416	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749976442		P-0075367-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			520	188	351	0	ENST00000279873.7:c.3194G>A	p.Gly1065Glu	p.G1065E	ENST00000279873	NM_032199.2	1065	gGa/gAa																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14380350	14380350	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075367-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	124	269	0	ENST00000256196.4:c.67G>T	p.Gly23Cys	p.G23C	ENST00000256196		23	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519997		P-0075367-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			158	168	350	0	ENST00000269305.4:c.332T>G	p.Leu111Arg	p.L111R	ENST00000269305	NM_001126112.2	111	cTg/cGg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138452225	138452225	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075367-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			140	39	170	0	ENST00000289153.2:c.1028T>G	p.Leu343Arg	p.L343R	ENST00000289153	NM_006219.2	343	cTt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0075367-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			120	31	144	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30733030	30733030	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755070814		P-0075367-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	122	289	0	ENST00000359013.4:c.1718C>T	p.Ser573Leu	p.S573L	ENST00000359013	NM_001024847.2	573	tCg/tTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974677	21974677	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1057519882		P-0075367-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			148	113	316	3	ENST00000304494.5:c.150G>T	p.Gln50His	p.Q50H	ENST00000304494	NM_000077.4	50	caG/caT																																																																															
MTOR	2475	MSKCC	GRCh37	1	11199689	11199689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075367-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			124	112	269	0	ENST00000361445.4:c.4899G>T	p.Trp1633Cys	p.W1633C	ENST00000361445	NM_004958.3	1633	tgG/tgT																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851644	63851644	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075367-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			436	150	369	0	ENST00000279873.7:c.2422G>C	p.Glu808Gln	p.E808Q	ENST00000279873	NM_032199.2	808	Gag/Cag																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557391	21557391	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075367-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			223	65	281	0	ENST00000382592.4:c.2454G>A	p.Trp818Ter	p.W818*	ENST00000382592	NM_014572.2	818	tgG/tgA																																																																															
SPOP	8405	MSKCC	GRCh37	17	47699321	47699321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075367-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			131	82	235	0	ENST00000347630.2:c.187G>A	p.Asp63Asn	p.D63N	ENST00000347630	NM_001007230.1	63	Gat/Aat																																																																															
ATR	545	MSKCC	GRCh37	3	142212039	142212039	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075367-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			233	67	304	0	ENST00000350721.4:c.6013C>G	p.Leu2005Val	p.L2005V	ENST00000350721	NM_001184.3	2005	Cta/Gta																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71161786	71161787	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	TG	TG	AA			P-0075367-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			90	56	221	0	ENST00000318789.4:c.182_183delinsTT	p.Ala61Val	p.A61V	ENST00000318789	NM_032682.5	61	gCA/gTT																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149499617	149499617	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075367-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			161	132	258	0	ENST00000261799.4:c.2656G>T	p.Val886Leu	p.V886L	ENST00000261799	NM_002609.3	886	Gtg/Ttg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139438531	139438531	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075367-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			182	185	281	0	ENST00000277541.6:c.85G>C	p.Glu29Gln	p.E29Q	ENST00000277541	NM_017617.3	29	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0075490-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	142	568	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929353	32929353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075490-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	54	324	0	ENST00000380152.3:c.7363C>T	p.His2455Tyr	p.H2455Y	ENST00000380152		2455	Cat/Tat																																																																															
NF2	4771	MSKCC	GRCh37	22	30057288	30057288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753300935		P-0075505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	93	569	16	ENST00000338641.4:c.770C>T	p.Pro257Leu	p.P257L	ENST00000338641	NM_000268.3	257	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0075505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	8	414	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0075534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	190	378	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992142	72992142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	151	411	0	ENST00000268489.5:c.1903C>T	p.Pro635Ser	p.P635S	ENST00000268489	NM_006885.3	635	Ccc/Tcc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120467996	120467996	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	88	375	0	ENST00000256646.2:c.4443T>G	p.Asp1481Glu	p.D1481E	ENST00000256646	NM_024408.3	1481	gaT/gaG																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910550	29910550	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs41557419		P-0075534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	41	234	0	ENST00000376809.5:c.90G>T	p.Arg30Ser	p.R30S	ENST00000376809	NM_002116.7	30	agG/agT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971193	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCACTCGGGCGCTG	CCGCCACTCGGGCGCTG	-			P-0075534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	410	363	0	ENST00000304494.5:c.165_181del	p.Ser56AlafsTer58	p.S56Afs*58	ENST00000304494	NM_000077.4	55	ggCAGCGCCCGAGTGGCGGag/ggag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288371	15288371	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	46	296	0	ENST00000263388.2:c.4368C>G	p.Phe1456Leu	p.F1456L	ENST00000263388	NM_000435.2	1456	ttC/ttG																																																																															
BLM	641	MSKCC	GRCh37	15	91358418	91358418	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	62	317	0	ENST00000355112.3:c.4163C>A	p.Ala1388Glu	p.A1388E	ENST00000355112	NM_000057.2	1388	gCg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0075535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	255	336	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821455	72821455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	114	451	0	ENST00000268489.5:c.10720C>T	p.His3574Tyr	p.H3574Y	ENST00000268489	NM_006885.3	3574	Cac/Tac																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99193497	99193497	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	164	393	1	ENST00000074304.5:c.2692G>T	p.Ala898Ser	p.A898S	ENST00000074304	NM_001134224.1	898	Gct/Tct																																																																															
FANCA	2175	MSKCC	GRCh37	16	89807242	89807242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1443680543		P-0075535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	27	379	0	ENST00000389301.3:c.3798G>A	p.Met1266Ile	p.M1266I	ENST00000389301	NM_000135.2	1266	atG/atA																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0075552-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			637	15	359	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764146326		P-0075552-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			571	20	377	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0075552-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			625	56	348	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782144		P-0075553-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			300	78	459	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906786	50906786	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778843530		P-0075553-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			272	60	368	0	ENST00000440232.2:c.1174G>A	p.Val392Met	p.V392M	ENST00000440232	NM_002691.3	392	Gtg/Atg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460476	149460476	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075553-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			303	41	430	0	ENST00000286301.3:c.161del	p.Pro54HisfsTer58	p.P54Hfs*58	ENST00000286301	NM_005211.3	54	cCa/ca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0075553-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			409	354	318	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969933	81969933	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752209691		P-0075572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	42	294	0	ENST00000359376.3:c.3002G>A	p.Arg1001His	p.R1001H	ENST00000359376	NM_002661.3	1001	cGc/cAc																																																																															
RET	5979	MSKCC	GRCh37	10	43612120	43612120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773256580		P-0075572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	41	340	0	ENST00000355710.3:c.2225C>T	p.Thr742Met	p.T742M	ENST00000355710	NM_020975.4	742	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057520007		P-0075572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	34	373	0	ENST00000269305.4:c.614A>T	p.Tyr205Phe	p.Y205F	ENST00000269305	NM_001126112.2	205	tAt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578229	7578229	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	35	363	0	ENST00000269305.4:c.620A>G	p.Asp207Gly	p.D207G	ENST00000269305	NM_001126112.2	207	gAt/gGt																																																																															
ATM	472	MSKCC	GRCh37	11	108124767	108124767	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0075572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	23	149	0	ENST00000278616.4:c.2124+1G>A		p.X708_splice	ENST00000278616	NM_000051.3	708																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	54	145	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923028	39923028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	42	140	0	ENST00000378444.4:c.3680G>T	p.Gly1227Val	p.G1227V	ENST00000378444	NM_001123385.1	1227	gGc/gTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107002	27107003	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	T			P-0075572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	48	292	0	ENST00000324856.7:c.6613_6614delinsT	p.Ala2205SerfsTer26	p.A2205Sfs*26	ENST00000324856	NM_006015.4	2205	GCc/Tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	60	184	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577144	7577146	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0075573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	81	356	0	ENST00000269305.4:c.792_794del	p.Leu265del	p.L265del	ENST00000269305	NM_001126112.2	264	ctACTg/ctg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578470	7578482	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGCGGGGGTGT	CGGGCGGGGGTGT	-	rs1064792930		P-0075574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	211	382	0	ENST00000269305.4:c.448_460del	p.Thr150AlafsTer16	p.T150Afs*16	ENST00000269305	NM_001126112.2	150	ACACCCCCGCCCGgc/gc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986959	36986959	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	21	279	0	ENST00000354822.5:c.730T>C	p.Tyr244His	p.Y244H	ENST00000354822	NM_001079668.2	244	Tac/Cac																																																																															
BRD4	23476	MSKCC	GRCh37	19	15374309	15374309	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	36	288	0	ENST00000263377.2:c.1263C>G	p.Asp421Glu	p.D421E	ENST00000263377	NM_058243.2	421	gaC/gaG																																																																															
BRD4	23476	MSKCC	GRCh37	19	15383766	15383789	+	inframe_deletion	In_Frame_Del	DEL	CTGGGGGCGGGGGGTTGGTGCTGG	CTGGGGGCGGGGGGTTGGTGCTGG	-			P-0075574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	60	352	0	ENST00000263377.2:c.122_145del	p.Ala41_Pro48del	p.A41_P48del	ENST00000263377	NM_058243.2	41	gCCAGCACCAACCCCCCGCCCCCAGag/gag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217882	2217882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	65	339	0	ENST00000398665.3:c.2656G>T	p.Ala886Ser	p.A886S	ENST00000398665	NM_032482.2	886	Gcc/Tcc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5273518	5273518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	60	347	0	ENST00000357368.4:c.314A>T	p.Tyr105Phe	p.Y105F	ENST00000357368	NM_002850.3	105	tAc/tTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390578	139390578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	91	361	0	ENST00000277541.6:c.7613G>A	p.Ser2538Asn	p.S2538N	ENST00000277541	NM_017617.3	2538	aGc/aAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76907800	76907800	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	59	285	0	ENST00000373344.5:c.4361A>G	p.Glu1454Gly	p.E1454G	ENST00000373344	NM_000489.3	1454	gAa/gGa																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031413	11031413	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	66	509	0	ENST00000327064.4:c.1413C>A	p.Asn471Lys	p.N471K	ENST00000327064	NM_199141.1	471	aaC/aaA																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0075616-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			32	13	262	0				ENST00000310581	NM_198253.2																																																																																	
EPHA3	2042	MSKCC	GRCh37	3	89528582	89528582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075616-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			162	20	310	0	ENST00000336596.2:c.2882C>A	p.Pro961Gln	p.P961Q	ENST00000336596	NM_005233.5	961	cCa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0075616-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			133	41	266	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
POT1	25913	MSKCC	GRCh37	7	124503470	124503470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075616-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			158	46	332	0	ENST00000357628.3:c.480G>T	p.Gln160His	p.Q160H	ENST00000357628	NM_015450.2	160	caG/caT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602899	10602899	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075616-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			148	31	349	0	ENST00000171111.5:c.679del	p.Gln227AsnfsTer3	p.Q227Nfs*3	ENST00000171111	NM_203500.1	227	Caa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579547	7579547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			441	504	353	0	ENST00000269305.4:c.140del	p.Pro47ArgfsTer76	p.P47Rfs*76	ENST00000269305	NM_001126112.2	47	cCg/cg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508473	106508473	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1370328855		P-0075617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			2216	168	240	0	ENST00000359195.3:c.467C>T	p.Ala156Val	p.A156V	ENST00000359195	NM_002649.2	156	gCg/gTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599904	10599904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	293	266	0	ENST00000171111.5:c.1672G>T	p.Gly558Trp	p.G558W	ENST00000171111	NM_203500.1	558	Ggg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140434507	140434507	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	171	300	0	ENST00000288602.6:c.2191C>A	p.Pro731Thr	p.P731T	ENST00000288602	NM_004333.4	731	Ccc/Acc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46254620	46254620	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			41	52	257	0	ENST00000334344.6:c.4810C>T	p.Gln1604Ter	p.Q1604*	ENST00000334344	NM_152641.2	1604	Cag/Tag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	364674	364675	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0075617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			416	92	265	0	ENST00000262320.3:c.887_888del	p.Ser296LeufsTer54	p.S296Lfs*54	ENST00000262320	NM_003502.3	296	tCC/t																																																																															
IGF1	3479	MSKCC	GRCh37	12	102869447	102869447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			157	112	263	0	ENST00000307046.8:c.194T>C	p.Val65Ala	p.V65A	ENST00000307046	NM_001111285.1	65	gTg/gCg																																																																															
NF1	4763	MSKCC	GRCh37	17	29665042	29665042	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0075617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			67	102	244	0	ENST00000358273.4:c.6705-1G>T		p.X2235_splice	ENST00000358273	NM_001042492.2	2235																																																																																
ARID5B	84159	MSKCC	GRCh37	10	63760024	63760024	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs990119259		P-0075617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			26	24	300	0	ENST00000279873.7:c.677G>A	p.Arg226Gln	p.R226Q	ENST00000279873	NM_032199.2	226	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075709-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			57	81	430	0	ENST00000269305.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000269305	NM_001126112.2	105	Ggc/Tgc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143043366	143043366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199940140		P-0075709-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			78	47	273	0	ENST00000262992.4:c.2050G>A	p.Val684Ile	p.V684I	ENST00000262992	NM_001101669.1	684	Gtt/Att																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244494	46244494	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0075709-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			73	157	410	0	ENST00000334344.6:c.2588C>G	p.Ser863Ter	p.S863*	ENST00000334344	NM_152641.2	863	tCa/tGa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001128	150001128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075709-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	42	335	0	ENST00000253339.5:c.2476C>T	p.His826Tyr	p.H826Y	ENST00000253339		826	Cat/Tat																																																																															
NF1	4763	MSKCC	GRCh37	17	29541529	29541529	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1131691610		P-0075709-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			81	54	199	0	ENST00000358273.4:c.1453G>T	p.Glu485Ter	p.E485*	ENST00000358273	NM_001042492.2	485	Gag/Tag																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797337	135797338	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0075709-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	13	313	0	ENST00000298552.3:c.531dup	p.Val178ArgfsTer40	p.V178Rfs*40	ENST00000298552	NM_001162426.1	177	-/C																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350597	89350597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075709-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	14	253	0	ENST00000301030.4:c.2353G>A	p.Asp785Asn	p.D785N	ENST00000301030	NM_001256183.1	785	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0075733-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			333	125	341	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075733-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	92	261	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44936073	44936073	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0075733-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			127	61	110	0	ENST00000377967.4:c.2832+2T>G		p.X944_splice	ENST00000377967	NM_021140.2	944																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971182	21971186	+	missense_variant	Missense_Mutation	ONP	ACTCG	ACTCG	CGAGT			P-0075733-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			304	98	341	0	ENST00000304494.5:c.172_176inv	p.Arg58_Val59delinsThrArg	p.R58_V59delinsTR	ENST00000304494	NM_000077.4	58	CGAGTg/ACTCGg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206794	36206806	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGACCCTCAT	GGCTGACCCTCAT	-			P-0075733-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			456	99	380	0	ENST00000300305.3:c.706_718del	p.Met236HisfsTer14	p.M236Hfs*14	ENST00000300305		236	ATGAGGGTCAGCCca/ca																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957897	1957897	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075733-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			354	118	300	0	ENST00000382895.3:c.2863G>C	p.Gly955Arg	p.G955R	ENST00000382895	NM_133330.2	955	Gga/Cga																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313506	30313506	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075733-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	65	309	0	ENST00000262643.3:c.1106T>G	p.Leu369Trp	p.L369W	ENST00000262643	NM_001238.2	369	tTg/tGg																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983216	149983218	+	missense_variant	Missense_Mutation	ONP	GTC	GTC	ATG			P-0075733-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			324	94	378	0	ENST00000253339.5:c.3040_3042delinsCAT	p.Asp1014His	p.D1014H	ENST00000253339		1014	GAC/CAT																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488893	231488894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs567805129		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			318	105	395	0	ENST00000295050.7:c.1263dup	p.Ile422TyrfsTer11	p.I422Yfs*11	ENST00000295050	NM_032018.5	419	aat/aaTt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932274	36932275	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			530	101	609	0	ENST00000361632.4:c.2194dup	p.Asp732GlyfsTer40	p.D732Gfs*40	ENST00000361632		732	gac/gGac																																																																															
MPL	4352	MSKCC	GRCh37	1	43804304	43804304	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763568293		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			522	107	517	0	ENST00000372470.3:c.304C>T	p.Arg102Cys	p.R102C	ENST00000372470	NM_005373.2	102	Cgt/Tgt																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			361	124	370	0	ENST00000262741.5:c.883del	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330611	65330611	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			521	60	452	0	ENST00000342505.4:c.1035del	p.Lys345AsnfsTer32	p.K345Nfs*32	ENST00000342505	NM_002227.2	345	aaA/aa																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074435	8074435	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs980250925		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			510	71	410	0	ENST00000377482.5:c.224C>T	p.Pro75Leu	p.P75L	ENST00000377482	NM_018948.3	75	cCg/cTg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777114	9777114	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs754116182		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			399	138	548	0	ENST00000377346.4:c.883del	p.Gln295ArgfsTer39	p.Q295Rfs*39	ENST00000377346	NM_005026.3	293	gCc/gc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100424	8100425	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs772396478		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			398	241	631	0	ENST00000346208.3:c.404dup	p.Ala136GlyfsTer167	p.A136Gfs*167	ENST00000346208		133	tac/taCc																																																																															
CTR9	9646	MSKCC	GRCh37	11	10796810	10796811	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			362	118	360	0	ENST00000361367.2:c.2949dup	p.Arg984ThrfsTer35	p.R984Tfs*35	ENST00000361367	NM_014633.3	981	cca/ccAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			624	54	534	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742468	17742468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			392	65	396	0	ENST00000250003.3:c.650C>T	p.Pro217Leu	p.P217L	ENST00000250003	NM_002478.4	217	cCg/cTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133245023	133245024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			568	50	538	0	ENST00000320574.5:c.2090_2091dup	p.Leu698ProfsTer95	p.L698Pfs*95	ENST00000320574	NM_006231.2	697	-/CC																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			416	67	417	4	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs770248150		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			264	55	361	0	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440055	49440055	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs886049483		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	92	460	0	ENST00000301067.7:c.4571G>A	p.Arg1524His	p.R1524H	ENST00000301067	NM_003482.3	1524	cGc/cAc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495715	56495715	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			386	66	412	0	ENST00000267101.3:c.3910del	p.His1304MetfsTer7	p.H1304Mfs*7	ENST00000267101	NM_001982.3	1302	gCc/gc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514839	103514839	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs577826260		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			551	101	479	0	ENST00000355739.4:c.1340C>T	p.Ala447Val	p.A447V	ENST00000355739	NM_000123.3	447	gCg/gTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877346	28877347	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			534	50	367	0	ENST00000282397.4:c.3974dup	p.Asp1326ArgfsTer23	p.D1326Rfs*23	ENST00000282397	NM_002019.4	1325	cca/ccCa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32936759	32936759	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			387	47	389	0	ENST00000380152.3:c.7905A>C	p.Glu2635Asp	p.E2635D	ENST00000380152		2635	gaA/gaC																																																																															
DICER1	23405	MSKCC	GRCh37	14	95596412	95596412	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			280	52	329	0	ENST00000343455.3:c.556T>C	p.Tyr186His	p.Y186H	ENST00000343455	NM_177438.2	186	Tat/Cat																																																																															
MGA	23269	MSKCC	GRCh37	15	42021441	42021442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			494	68	474	1	ENST00000219905.7:c.3744dup	p.Glu1249ArgfsTer25	p.E1249Rfs*25	ENST00000219905	NM_001164273.1	1246	cga/cgAa																																																																															
MGA	23269	MSKCC	GRCh37	15	42053935	42053935	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			256	29	299	0	ENST00000219905.7:c.7399-2A>G		p.X2467_splice	ENST00000219905	NM_001164273.1	2467																																																																																
NTHL1	4913	MSKCC	GRCh37	16	2089996	2089996	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			493	81	495	0	ENST00000219066.1:c.868T>C	p.Cys290Arg	p.C290R	ENST00000219066	NM_002528.5	290	Tgt/Cgt																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2096364	2096364	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375615004		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	127	351	0	ENST00000219066.1:c.143C>T	p.Ala48Val	p.A48V	ENST00000219066	NM_002528.5	48	gCg/gTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136733	2136733	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			525	73	472	0	ENST00000219476.3:c.4850C>T	p.Ala1617Val	p.A1617V	ENST00000219476	NM_000548.3	1617	gCc/gTc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647028	23647028	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			439	46	457	0	ENST00000261584.4:c.839del	p.Asn280ThrfsTer8	p.N280Tfs*8	ENST00000261584	NM_024675.3	280	aAc/ac																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			544	75	518	0	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	160	444	4	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828024	72828024	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200701402		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			467	95	400	0	ENST00000268489.5:c.8557G>A	p.Ala2853Thr	p.A2853T	ENST00000268489	NM_006885.3	2853	Gca/Aca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992513	72992513	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			493	61	438	0	ENST00000268489.5:c.1532C>A	p.Pro511His	p.P511H	ENST00000268489	NM_006885.3	511	cCt/cAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993866	72993866	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761842147		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	159	480	0	ENST00000268489.5:c.179G>A	p.Arg60His	p.R60H	ENST00000268489	NM_006885.3	60	cGc/cAc																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544590	86544590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			384	159	525	1	ENST00000262426.4:c.415C>T	p.Arg139Trp	p.R139W	ENST00000262426	NM_001451.2	139	Cgg/Tgg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349291	89349291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			585	94	523	0	ENST00000301030.4:c.3659G>T	p.Arg1220Met	p.R1220M	ENST00000301030	NM_001256183.1	1220	aGg/aTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9984875	9984875	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			502	63	380	0	ENST00000330684.3:c.1090A>T	p.Ile364Phe	p.I364F	ENST00000330684	NM_001134407.1	364	Att/Ttt																																																																															
NF1	4763	MSKCC	GRCh37	17	29486050	29486050	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1438566555		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			330	31	338	0	ENST00000358273.4:c.233del	p.Asn78IlefsTer7	p.N78Ifs*7	ENST00000358273	NM_001042492.2	76	gAa/ga																																																																															
NF1	4763	MSKCC	GRCh37	17	29552144	29552144	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			292	101	330	0	ENST00000358273.4:c.1882del	p.Tyr628ThrfsTer3	p.Y628Tfs*3	ENST00000358273	NM_001042492.2	626	cTt/ct																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			537	85	446	0	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245586	41245587	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs80357853		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			443	50	436	2	ENST00000357654.3:c.1961dup	p.Tyr655ValfsTer18	p.Y655Vfs*18	ENST00000357654	NM_007294.3	654	aag/aaAg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217705	7217707	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs757139280		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			492	55	447	0	ENST00000380728.2:c.220_222del	p.Glu74del	p.E74del	ENST00000380728		74	GAG/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			474	64	431	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39537672	39537672	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			403	47	436	0	ENST00000262039.4:c.206C>A	p.Pro69His	p.P69H	ENST00000262039	NM_002647.2	69	cCt/cAt																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61305171	61305171	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1221398490		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			669	54	511	0	ENST00000341074.5:c.955T>G	p.Trp319Gly	p.W319G	ENST00000341074	NM_002974.2	319	Tgg/Ggg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265386	10265386	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1003447106		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			511	195	579	2	ENST00000340748.4:c.1660G>A	p.Ala554Thr	p.A554T	ENST00000340748		554	Gcg/Acg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272237	15272238	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			244	160	502	0	ENST00000263388.2:c.6201dup	p.Gly2068ArgfsTer27	p.G2068Rfs*27	ENST00000263388	NM_000435.2	2067	-/C																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272336	15272337	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs771517374		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			545	79	560	2	ENST00000263388.2:c.6102dup	p.Gly2035ArgfsTer60	p.G2035Rfs*60	ENST00000263388	NM_000435.2	2034	-/C																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19261529	19261529	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			415	64	361	1	ENST00000162023.5:c.16del	p.Ile6SerfsTer14	p.I6Sfs*14	ENST00000162023		6	Atc/tc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214728	36214728	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	53	342	0	ENST00000222270.7:c.3159del	p.Arg1055GlyfsTer127	p.R1055Gfs*127	ENST00000222270	NM_014727.1	1052	Ggg/gg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			617	67	611	2	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
ERF	2077	MSKCC	GRCh37	19	42752786	42752786	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762382429		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			518	32	496	0	ENST00000222329.4:c.1478G>A	p.Arg493His	p.R493H	ENST00000222329	NM_006494.2	493	cGc/cAc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50917060	50917060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139235742		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			582	53	527	0	ENST00000440232.2:c.2312C>T	p.Ala771Val	p.A771V	ENST00000440232	NM_002691.3	771	gCg/gTg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046961	128046961	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			424	167	392	0	ENST00000285398.2:c.774T>A	p.Asp258Glu	p.D258E	ENST00000285398	NM_000122.1	258	gaT/gaA																																																																															
ACVR1	90	MSKCC	GRCh37	2	158594123	158594123	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1256476437		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			501	61	366	0	ENST00000263640.3:c.1450G>A	p.Ala484Thr	p.A484T	ENST00000263640	NM_001105.4	484	Gca/Aca																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989533	212989533	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	138	398	0	ENST00000342788.4:c.178A>G	p.Met60Val	p.M60V	ENST00000342788	NM_005235.2	60	Atg/Gtg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225346735	225346735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			370	48	383	0	ENST00000264414.4:c.1903G>A	p.Ala635Thr	p.A635T	ENST00000264414	NM_003590.4	635	Gcc/Acc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470579	25470580	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1157280960		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			447	61	428	0	ENST00000264709.3:c.894dup	p.Lys299GlufsTer25	p.K299Efs*25	ENST00000264709	NM_175629.2	298	-/G																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375079	31375079	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764064020		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			556	91	503	0	ENST00000328111.2:c.476C>T	p.Pro159Leu	p.P159L	ENST00000328111	NM_006892.3	159	cCg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743859	40743859	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369430281		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			373	56	348	0	ENST00000373198.4:c.3136C>T	p.Arg1046Cys	p.R1046C	ENST00000373198	NM_133170.3	1046	Cgc/Tgc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46256699	46256699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749607074		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			298	50	340	0	ENST00000371998.3:c.755G>A	p.Arg252His	p.R252H	ENST00000371998		252	cGc/cAc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29115381	29115381	+	splice_donor_variant	Splice_Site	SNP	A	A	G	rs781021132		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			259	31	256	1	ENST00000328354.6:c.683+2T>C		p.X228_splice	ENST00000328354	NM_007194.3	228																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs749415085		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			312	35	339	0	ENST00000263967.3:c.112C>A	p.Arg38Ser	p.R38S	ENST00000263967	NM_006218.2	38	Cgt/Agt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	127	438	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			532	55	458	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682359	52682359	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	48	351	0	ENST00000394830.3:c.813+1G>T		p.X271_splice	ENST00000394830	NM_018313.4	271																																																																																
TET2	54790	MSKCC	GRCh37	4	106156748	106156748	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769376786		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			499	78	515	0	ENST00000380013.4:c.1649G>A	p.Arg550Gln	p.R550Q	ENST00000380013	NM_001127208.2	550	cGa/cAa																																																																															
TET2	54790	MSKCC	GRCh37	4	106193849	106193850	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs777908833		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			507	72	395	0	ENST00000380013.4:c.4317dup	p.Arg1440ThrfsTer38	p.R1440Tfs*38	ENST00000380013	NM_001127208.2	1437	-/A																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143181689	143181689	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766348198		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			306	121	324	0	ENST00000262992.4:c.644C>T	p.Pro215Leu	p.P215L	ENST00000262992	NM_001101669.1	215	cCg/cTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187527354	187527354	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373193128		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	132	359	0	ENST00000441802.2:c.10220C>T	p.Thr3407Met	p.T3407M	ENST00000441802	NM_005245.3	3407	aCg/aTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540953	187540953	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750839835		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			482	198	551	0	ENST00000441802.2:c.6787G>A	p.Ala2263Thr	p.A2263T	ENST00000441802	NM_005245.3	2263	Gct/Act																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980558	1980559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			565	60	561	0	ENST00000382895.3:c.4027_4028dup	p.Glu1344GlnfsTer49	p.E1344Qfs*49	ENST00000382895	NM_133330.2	1340	-/CC																																																																															
APC	324	MSKCC	GRCh37	5	112175529	112175535	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTAAG	TGGTAAG	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			354	117	404	0	ENST00000257430.4:c.4241_4247del	p.Val1414AlafsTer3	p.V1414Afs*3	ENST00000257430	NM_000038.5	1413	aTGGTAAGt/at																																																																															
APC	324	MSKCC	GRCh37	5	112179578	112179578	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			507	49	475	0	ENST00000257430.4:c.8287A>G	p.Ser2763Gly	p.S2763G	ENST00000257430	NM_000038.5	2763	Agt/Ggt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636997	176636997	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			597	69	497	0	ENST00000439151.2:c.1597C>A	p.Leu533Ile	p.L533I	ENST00000439151	NM_022455.4	533	Ctt/Att																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			554	63	430	3	ENST00000261937.6:c.89del	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553281	106553281	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			504	163	505	0	ENST00000369096.4:c.1251del	p.Tyr418ThrfsTer3	p.Y418Tfs*3	ENST00000369096	NM_001198.3	416	Ccc/cc																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137528169	137528169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			339	51	323	0	ENST00000367739.4:c.131C>A	p.Pro44His	p.P44H	ENST00000367739	NM_000416.2	44	cCt/cAt																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202350	138202351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775280214		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	36	422	0	ENST00000237289.4:c.2274dup	p.Lys759GlnfsTer10	p.K759Qfs*10	ENST00000237289	NM_001270507.1	756	gac/gaCc																																																																															
PARK2	5071	MSKCC	GRCh37	6	161781122	161781122	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	62	379	2	ENST00000366898.1:c.1283del	p.Asn428MetfsTer7	p.N428Mfs*7	ENST00000366898	NM_004562.2	428	aAt/at																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			243	262	394	1	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790819	89790819	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			539	55	542	0	ENST00000336032.3:c.211del	p.Gln71SerfsTer112	p.Q71Sfs*112	ENST00000336032	NM_006813.2	69	aCc/ac																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979379	93979379	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			321	56	363	0	ENST00000369303.4:c.1450-1G>T		p.X484_splice	ENST00000369303	NM_004440.3	484																																																																																
ETV1	2115	MSKCC	GRCh37	7	13971174	13971174	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			489	70	429	0	ENST00000405192.2:c.755del	p.Pro252LeufsTer3	p.P252Lfs*3	ENST00000405192	NM_001163147.1	252	cCt/ct																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450243	50450243	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757521297		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	158	416	1	ENST00000331340.3:c.427C>T	p.Arg143Trp	p.R143W	ENST00000331340	NM_006060.4	143	Cgg/Tgg																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538897	23538897	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1200957711		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			468	78	426	0	ENST00000380871.4:c.542G>A	p.Arg181Gln	p.R181Q	ENST00000380871	NM_006167.3	181	cGa/cAa																																																																															
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			340	38	468	1	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907170	101907170	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			286	48	317	0	ENST00000374994.4:c.1130G>T	p.Arg377Met	p.R377M	ENST00000374994	NM_004612.2	377	aGg/aTg																																																																															
ABL1	25	MSKCC	GRCh37	9	133760125	133760125	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	62	376	0	ENST00000318560.5:c.2448A>C	p.Lys816Asn	p.K816N	ENST00000318560	NM_005157.4	816	aaA/aaC																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139563011	139563011	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs548014889		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	87	483	0	ENST00000308874.7:c.83G>A	p.Arg28His	p.R28H	ENST00000308874		28	cGt/cAt																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2033024	2033024	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1225541640		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			437	95	424	0	ENST00000349721.2:c.298C>T	p.Arg100Ter	p.R100*	ENST00000349721	NM_003070.3	100	Cga/Tga																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882050	36882050	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	91	426	2	ENST00000358127.4:c.963del	p.Ala322LeufsTer11	p.A322Lfs*11	ENST00000358127	NM_001280556.1	321	ccC/cc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080557	5080557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	86	391	0	ENST00000381652.3:c.2308C>T	p.His770Tyr	p.H770Y	ENST00000381652	NM_004972.3	770	Cat/Tat																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			459	71	463	0	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39914743	39914743	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			197	67	164	0	ENST00000378444.4:c.4619A>G	p.Asn1540Ser	p.N1540S	ENST00000378444	NM_001123385.1	1540	aAc/aGc																																																																															
MED12	9968	MSKCC	GRCh37	X	70360685	70360685	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	108	282	0	ENST00000374080.3:c.6245A>G	p.Gln2082Arg	p.Q2082R	ENST00000374080		2082	cAg/cGg																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165951	118165951	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			588	90	541	0	ENST00000369448.3:c.461T>C	p.Leu154Pro	p.L154P	ENST00000369448	NM_017709.3	154	cTg/cCg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466308	120466308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			426	155	462	0	ENST00000256646.2:c.4811G>T	p.Arg1604Met	p.R1604M	ENST00000256646	NM_024408.3	1604	aGg/aTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255179	16255179	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1236193442		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			572	114	501	0	ENST00000375759.3:c.2444A>G	p.Glu815Gly	p.E815G	ENST00000375759	NM_015001.2	815	gAa/gGa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261071	16261071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			594	98	516	0	ENST00000375759.3:c.8336C>T	p.Ala2779Val	p.A2779V	ENST00000375759	NM_015001.2	2779	gCt/gTt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746045	162746045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			533	72	497	0	ENST00000367921.3:c.2168C>T	p.Thr723Ile	p.T723I	ENST00000367921	NM_006182.2	723	aCa/aTa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193099355	193099355	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	41	403	0	ENST00000367435.3:c.289T>C	p.Tyr97His	p.Y97H	ENST00000367435	NM_024529.4	97	Tat/Cat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092798	27092798	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			464	72	439	0	ENST00000324856.7:c.2819T>C	p.Met940Thr	p.M940T	ENST00000324856	NM_006015.4	940	aTg/aCg																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39317323	39317323	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			436	32	370	0	ENST00000373001.3:c.863T>C	p.Met288Thr	p.M288T	ENST00000373001	NM_022157.3	288	aTg/aCg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726480	46726480	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			581	66	551	0	ENST00000371975.4:c.559C>A	p.Leu187Ile	p.L187I	ENST00000371975	NM_003579.3	187	Cta/Ata																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784966	9784966	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			410	131	390	0	ENST00000377346.4:c.2969G>T	p.Ser990Ile	p.S990I	ENST00000377346	NM_005026.3	990	aGc/aTc																																																																															
ATM	472	MSKCC	GRCh37	11	108106475	108106475	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			399	43	402	0	ENST00000278616.4:c.410A>G	p.Tyr137Cys	p.Y137C	ENST00000278616	NM_000051.3	137	tAc/tGc																																																																															
ATM	472	MSKCC	GRCh37	11	108151819	108151819	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	55	379	0	ENST00000278616.4:c.3500T>A	p.Ile1167Asn	p.I1167N	ENST00000278616	NM_000051.3	1167	aTc/aAc																																																																															
ATM	472	MSKCC	GRCh37	11	108186627	108186627	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			421	52	398	0	ENST00000278616.4:c.6084A>C	p.Gln2028His	p.Q2028H	ENST00000278616	NM_000051.3	2028	caA/caC																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125497672	125497672	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			390	67	388	0	ENST00000428830.2:c.236T>C	p.Ile79Thr	p.I79T	ENST00000428830	NM_001114121.2	79	aTc/aCc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64126709	64126709	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			246	44	256	0	ENST00000334205.4:c.2T>C	p.Met1?	p.M1?	ENST00000334205	NM_003942.2	1	aTg/aCg																																																																															
GAB2	9846	MSKCC	GRCh37	11	77961254	77961254	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1323699566		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			606	62	493	0	ENST00000361507.4:c.569A>G	p.Gln190Arg	p.Q190R	ENST00000361507	NM_080491.2	190	cAg/cGg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94194193	94194193	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	69	258	0	ENST00000323929.3:c.1235T>A	p.Ile412Asn	p.I412N	ENST00000323929	NM_005591.3	412	aTc/aAc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245317	46245318	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			509	93	502	0	ENST00000334344.6:c.3416dup	p.Val1140SerfsTer20	p.V1140Sfs*20	ENST00000334344	NM_152641.2	1137	-/G																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432048	49432048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			520	93	528	0	ENST00000301067.7:c.9091C>A	p.Leu3031Met	p.L3031M	ENST00000301067	NM_003482.3	3031	Ctg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434343	49434343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			567	102	499	1	ENST00000301067.7:c.7210C>T	p.Pro2404Ser	p.P2404S	ENST00000301067	NM_003482.3	2404	Ccc/Tcc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56493632	56493632	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			610	104	527	0	ENST00000267101.3:c.2948G>T	p.Gly983Val	p.G983V	ENST00000267101	NM_001982.3	983	gGg/gTg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495441	56495441	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			605	89	525	0	ENST00000267101.3:c.3635del	p.Pro1212LeufsTer52	p.P1212Lfs*52	ENST00000267101	NM_001982.3	1211	Ccc/cc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495495	56495495	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			613	90	525	0	ENST00000267101.3:c.3685T>C	p.Ser1229Pro	p.S1229P	ENST00000267101	NM_001982.3	1229	Tca/Cca																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514446	103514446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			398	106	390	0	ENST00000355739.4:c.947G>A	p.Gly316Asp	p.G316D	ENST00000355739	NM_000123.3	316	gGc/gAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437895	110437895	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			122	68	201	0	ENST00000375856.3:c.506G>T	p.Gly169Val	p.G169V	ENST00000375856	NM_003749.2	169	gGc/gTc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26959471	26959471	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			373	65	332	0	ENST00000381527.3:c.638A>C	p.Lys213Thr	p.K213T	ENST00000381527	NM_001260.1	213	aAa/aCa																																																																															
CDK8	1024	MSKCC	GRCh37	13	26975405	26975405	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs1305759968		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			354	55	364	0	ENST00000381527.3:c.1032-1G>A		p.X344_splice	ENST00000381527	NM_001260.1	344																																																																																
FLT3	2322	MSKCC	GRCh37	13	28626690	28626690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			505	66	391	0	ENST00000241453.7:c.606G>T	p.Gln202His	p.Q202H	ENST00000241453	NM_004119.2	202	caG/caT																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906481	32906481	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			288	114	353	0	ENST00000380152.3:c.866A>T	p.Asn289Ile	p.N289I	ENST00000380152		289	aAt/aTt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914081	32914081	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			349	38	416	0	ENST00000380152.3:c.5589A>C	p.Lys1863Asn	p.K1863N	ENST00000380152		1863	aaA/aaC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953601	32953601	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587782021		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			450	49	378	0	ENST00000380152.3:c.8902A>G	p.Thr2968Ala	p.T2968A	ENST00000380152		2968	Acc/Gcc																																																																															
RB1	5925	MSKCC	GRCh37	13	48951072	48951072	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			228	42	284	0	ENST00000267163.4:c.1234A>T	p.Lys412Ter	p.K412*	ENST00000267163	NM_000321.2	412	Aaa/Taa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30047491	30047491	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			266	40	318	0	ENST00000331968.5:c.2510C>A	p.Pro837His	p.P837H	ENST00000331968	NM_002742.2	837	cCt/cAt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396522	30396523	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA	rs774746407		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	64	337	0	ENST00000331968.5:c.194_196dup	p.Leu65dup	p.L65dup	ENST00000331968	NM_002742.2	65	cag/cTGCag																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562654	95562654	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			564	97	500	0	ENST00000343455.3:c.4603T>G	p.Cys1535Gly	p.C1535G	ENST00000343455	NM_177438.2	1535	Tgt/Ggt																																																																															
RAD51	5888	MSKCC	GRCh37	15	41001307	41001307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			467	75	350	0	ENST00000267868.3:c.428C>T	p.Thr143Ile	p.T143I	ENST00000267868	NM_002875.4	143	aCc/aTc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749290	43749290	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371845645		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			422	80	442	0	ENST00000382044.4:c.1516C>T	p.Pro506Ser	p.P506S	ENST00000382044	NM_001141980.1	506	Cct/Tct																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66679757	66679757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			453	53	391	0	ENST00000307102.5:c.72C>A	p.Ser24Arg	p.S24R	ENST00000307102	NM_002755.3	24	agC/agA																																																																															
CD276	80381	MSKCC	GRCh37	15	73994919	73994919	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			110	19	132	0	ENST00000318443.5:c.403A>G	p.Ser135Gly	p.S135G	ENST00000318443	NM_001024736.1	135	Agc/Ggc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420183	88420183	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			436	72	436	0	ENST00000360948.2:c.2503C>A	p.Leu835Met	p.L835M	ENST00000360948	NM_001012338.2	835	Ctg/Atg																																																																															
BLM	641	MSKCC	GRCh37	15	91292769	91292769	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			572	74	468	0	ENST00000355112.3:c.275del	p.Asn92MetfsTer37	p.N92Mfs*37	ENST00000355112	NM_000057.2	91	Aaa/aa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251274	99251274	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			506	68	465	0	ENST00000268035.6:c.578A>T	p.Glu193Val	p.E193V	ENST00000268035	NM_000875.3	193	gAg/gTg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14015993	14015993	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	61	362	0	ENST00000311895.7:c.313G>T	p.Gly105Cys	p.G105C	ENST00000311895	NM_005236.2	105	Ggt/Tgt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121783	2121783	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			335	60	352	0	ENST00000219476.3:c.1947-2A>C		p.X649_splice	ENST00000219476	NM_000548.3	649																																																																																
PALB2	79728	MSKCC	GRCh37	16	23647264	23647264	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			406	76	443	0	ENST00000261584.4:c.603T>A	p.Ser201Arg	p.S201R	ENST00000261584	NM_024675.3	201	agT/agA																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640298	3640298	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			465	82	453	0	ENST00000294008.3:c.3341T>C	p.Val1114Ala	p.V1114A	ENST00000294008	NM_032444.2	1114	gTc/gCc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67660539	67660539	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1305124662		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			476	69	353	0	ENST00000264010.4:c.1439A>G	p.Tyr480Cys	p.Y480C	ENST00000264010	NM_006565.3	480	tAt/tGt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671684	67671684	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			534	97	468	0	ENST00000264010.4:c.2093A>T	p.Glu698Val	p.E698V	ENST00000264010	NM_006565.3	698	gAg/gTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831221	72831221	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs774648688		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			505	87	503	0	ENST00000268489.5:c.5360T>C	p.Leu1787Pro	p.L1787P	ENST00000268489	NM_006885.3	1787	cTg/cCg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350456	89350456	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs772812979		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			516	76	435	0	ENST00000301030.4:c.2494A>G	p.Ser832Gly	p.S832G	ENST00000301030	NM_001256183.1	832	Agc/Ggc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89838093	89838093	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			651	77	436	0	ENST00000389301.3:c.2144A>G	p.Glu715Gly	p.E715G	ENST00000389301	NM_000135.2	715	gAa/gGa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974883	15974883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			442	78	408	2	ENST00000268712.3:c.3992C>T	p.Ala1331Val	p.A1331V	ENST00000268712	NM_006311.3	1331	gCc/gTc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37872115	37872115	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201021373		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			469	186	508	0	ENST00000269571.5:c.1436C>T	p.Thr479Met	p.T479M	ENST00000269571		479	aCg/aTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56434834	56434834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			570	72	583	0	ENST00000407977.2:c.2303A>G	p.Gln768Arg	p.Q768R	ENST00000407977		768	cAg/cGg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCC			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			640	38	565	0	ENST00000407977.2:c.1974_1976dup	p.Gly659dup	p.G659dup	ENST00000407977		659	ggt/ggGGGt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435183	56435183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			616	70	520	0	ENST00000407977.2:c.1954C>T	p.Pro652Ser	p.P652S	ENST00000407977		652	Cca/Tca																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732908	74732908	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	72	402	0	ENST00000359995.5:c.335del	p.Gly112AlafsTer120	p.G112Afs*120	ENST00000359995	NM_001195427.1	112	gGc/gc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78935192	78935192	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			423	69	389	0	ENST00000306801.3:c.3606-2A>G		p.X1202_splice	ENST00000306801	NM_020761.2	1202																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11097131	11097131	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748298484		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			480	74	497	0	ENST00000344626.4:c.622C>T	p.Arg208Trp	p.R208W	ENST00000344626	NM_003072.3	208	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135095	11135095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			415	135	415	0	ENST00000344626.4:c.3062G>A	p.Gly1021Asp	p.G1021D	ENST00000344626	NM_003072.3	1021	gGc/gAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138597	11138597	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			503	63	382	0	ENST00000344626.4:c.3353A>G	p.Tyr1118Cys	p.Y1118C	ENST00000344626	NM_003072.3	1118	tAt/tGt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272245	15272245	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			354	63	518	0	ENST00000263388.2:c.6194G>T	p.Arg2065Met	p.R2065M	ENST00000263388	NM_000435.2	2065	aGg/aTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281221	15281221	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			528	78	539	0	ENST00000263388.2:c.5035G>T	p.Gly1679Cys	p.G1679C	ENST00000263388	NM_000435.2	1679	Ggc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15308386	15308386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			480	90	427	0	ENST00000263388.2:c.122C>A	p.Pro41His	p.P41H	ENST00000263388	NM_000435.2	41	cCc/cAc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375341	15375341	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	66	446	0	ENST00000263377.2:c.1086G>T	p.Lys362Asn	p.K362N	ENST00000263377	NM_058243.2	362	aaG/aaT																																																																															
TCF3	6929	MSKCC	GRCh37	19	1625575	1625575	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			439	65	480	1	ENST00000344749.5:c.499G>T	p.Asp167Tyr	p.D167Y	ENST00000344749	NM_001136139.2	167	Gac/Tac																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17384814	17384814	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			596	88	489	0	ENST00000359435.4:c.446T>C	p.Val149Ala	p.V149A	ENST00000359435	NM_001033549.1	149	gTg/gCg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18971181	18971181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			509	50	482	0	ENST00000262803.5:c.2234C>T	p.Pro745Leu	p.P745L	ENST00000262803	NM_002911.3	745	cCg/cTg																																																																															
GNA11	2767	MSKCC	GRCh37	19	3119225	3119225	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			519	73	540	0	ENST00000078429.4:c.757G>T	p.Ala253Ser	p.A253S	ENST00000078429	NM_002067.2	253	Gcc/Tcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36217241	36217241	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			400	44	347	0	ENST00000222270.7:c.3990G>T	p.Gln1330His	p.Q1330H	ENST00000222270	NM_014727.1	1330	caG/caT																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905976	50905976	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	156	510	0	ENST00000440232.2:c.948T>A	p.Asp316Glu	p.D316E	ENST00000440232	NM_002691.3	316	gaT/gaA																																																																															
INSR	3643	MSKCC	GRCh37	19	7163189	7163189	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	68	432	0	ENST00000302850.5:c.1883C>A	p.Pro628Gln	p.P628Q	ENST00000302850	NM_000208.2	628	cCa/cAa																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082874	16082874	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			158	27	205	0	ENST00000281043.3:c.691del	p.Ala231ProfsTer30	p.A231Pfs*30	ENST00000281043	NM_005378.4	230	Ggg/gg																																																																															
CASP8	841	MSKCC	GRCh37	2	202137380	202137380	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs142688117		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			498	85	450	0	ENST00000358485.4:c.608T>C	p.Ile203Thr	p.I203T	ENST00000358485	NM_001080125.1	203	aTa/aCa																																																																															
CASP8	841	MSKCC	GRCh37	2	202149663	202149663	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			553	72	444	0	ENST00000358485.4:c.1104C>A	p.Cys368Ter	p.C368*	ENST00000358485	NM_001080125.1	368	tgC/tgA																																																																															
IDH1	3417	MSKCC	GRCh37	2	209108306	209108306	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			436	72	396	0	ENST00000345146.2:c.543del	p.Met182CysfsTer28	p.M182Cfs*28	ENST00000345146	NM_005896.2	181	ggG/gg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530124	212530124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			544	75	489	0	ENST00000342788.4:c.1795G>T	p.Gly599Trp	p.G599W	ENST00000342788	NM_005235.2	599	Ggg/Tgg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371670	225371670	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			365	38	406	0	ENST00000264414.4:c.934del	p.Thr312GlnfsTer6	p.T312Qfs*6	ENST00000264414	NM_003590.4	312	Aca/ca																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46588067	46588067	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs776254639		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			419	147	518	0	ENST00000263734.3:c.617C>A	p.Pro206His	p.P206H	ENST00000263734	NM_001430.4	206	cCt/cAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735479	40735479	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			495	60	487	0	ENST00000373198.4:c.3394T>G	p.Phe1132Val	p.F1132V	ENST00000373198	NM_133170.3	1132	Ttc/Gtc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790024	40790024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			515	59	422	0	ENST00000373198.4:c.2707G>T	p.Gly903Cys	p.G903C	ENST00000373198	NM_133170.3	903	Ggc/Tgc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62319708	62319708	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			350	120	429	0	ENST00000482936.1:c.1691C>A	p.Pro564His	p.P564H	ENST00000482936		564	cCt/cAt																																																																															
EP300	2033	MSKCC	GRCh37	22	41573884	41573884	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			553	95	537	0	ENST00000263253.7:c.6169A>G	p.Thr2057Ala	p.T2057A	ENST00000263253	NM_001429.3	2057	Act/Gct																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968329	134968329	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			374	63	410	0	ENST00000398015.3:c.2842T>A	p.Ser948Thr	p.S948T	ENST00000398015	NM_004441.4	948	Tca/Aca																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138407715	138407715	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	64	374	0	ENST00000289153.2:c.2136+2T>C		p.X712_splice	ENST00000289153	NM_006219.2	712																																																																																
ATR	545	MSKCC	GRCh37	3	142242926	142242926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			579	66	434	0	ENST00000350721.4:c.4061G>A	p.Cys1354Tyr	p.C1354Y	ENST00000350721	NM_001184.3	1354	tGt/tAt																																																																															
ATR	545	MSKCC	GRCh37	3	142257418	142257418	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	136	410	0	ENST00000350721.4:c.3631C>A	p.Leu1211Ile	p.L1211I	ENST00000350721	NM_001184.3	1211	Ctt/Att																																																																															
ATR	545	MSKCC	GRCh37	3	142278157	142278157	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			346	32	391	0	ENST00000350721.4:c.1668A>T	p.Lys556Asn	p.K556N	ENST00000350721	NM_001184.3	556	aaA/aaT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928352	178928352	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			362	62	366	0	ENST00000263967.3:c.1538T>C	p.Leu513Pro	p.L513P	ENST00000263967	NM_006218.2	513	cTg/cCg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686295	30686295	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			440	164	482	0	ENST00000359013.4:c.226T>C	p.Cys76Arg	p.C76R	ENST00000359013	NM_001024847.2	76	Tgt/Cgt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37048552	37048552	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			386	51	367	0	ENST00000231790.2:c.451A>G	p.Thr151Ala	p.T151A	ENST00000231790	NM_000249.3	151	Acg/Gcg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098549	47098549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			496	82	550	0	ENST00000409792.3:c.6725C>T	p.Ala2242Val	p.A2242V	ENST00000409792	NM_014159.6	2242	gCc/gTc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49935553	49935553	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			542	77	459	0	ENST00000296474.3:c.1811A>G	p.Glu604Gly	p.E604G	ENST00000296474	NM_002447.2	604	gAg/gGg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442518	52442518	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1221534458		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			443	162	449	0	ENST00000460680.1:c.227T>C	p.Ile76Thr	p.I76T	ENST00000460680	NM_004656.3	76	aTt/aCt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52692267	52692267	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			406	60	361	0	ENST00000394830.3:c.593A>C	p.Asn198Thr	p.N198T	ENST00000394830	NM_018313.4	198	aAt/aCt																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72881581	72881581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			400	55	315	0	ENST00000325599.8:c.538G>A	p.Ala180Thr	p.A180T	ENST00000325599	NM_018130.2	180	Gct/Act																																																																															
TET2	54790	MSKCC	GRCh37	4	106190814	106190814	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			548	86	382	0	ENST00000380013.4:c.4092A>C	p.Glu1364Asp	p.E1364D	ENST00000380013	NM_001127208.2	1364	gaA/gaC																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155244	55155244	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			482	75	438	0	ENST00000257290.5:c.2843A>T	p.Glu948Val	p.E948V	ENST00000257290	NM_006206.4	948	gAg/gTg																																																																															
KIT	3815	MSKCC	GRCh37	4	55595549	55595549	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			251	82	371	0	ENST00000288135.5:c.2039A>T	p.Asn680Ile	p.N680I	ENST00000288135	NM_000222.2	680	aAt/aTt																																																																															
REST	5978	MSKCC	GRCh37	4	57777264	57777264	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			626	87	455	0	ENST00000309042.7:c.460T>C	p.Ser154Pro	p.S154P	ENST00000309042	NM_005612.4	154	Tcg/Ccg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231740	66231740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	76	366	0	ENST00000273854.3:c.1960C>T	p.His654Tyr	p.H654Y	ENST00000273854	NM_004439.5	654	Cat/Tat																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467645	66467646	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			469	57	421	0	ENST00000273854.3:c.623dup	p.Phe210IlefsTer22	p.F210Ifs*22	ENST00000273854	NM_004439.5	208	aag/aaAg																																																																															
ALB	213	MSKCC	GRCh37	4	74279281	74279281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			586	83	482	0	ENST00000295897.4:c.988G>T	p.Ala330Ser	p.A330S	ENST00000295897	NM_000477.5	330	Gct/Tct																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84390290	84390290	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs754342294		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			345	40	275	0	ENST00000321945.7:c.491T>C	p.Val164Ala	p.V164A	ENST00000321945	NM_139076.2	164	gTa/gCa																																																																															
APC	324	MSKCC	GRCh37	5	112173597	112173597	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	117	423	0	ENST00000257430.4:c.2306T>A	p.Leu769Ter	p.L769*	ENST00000257430	NM_000038.5	769	tTa/tAa																																																																															
TERT	7015	MSKCC	GRCh37	5	1271297	1271297	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1060503004		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			293	135	351	0	ENST00000310581.5:c.2405G>T	p.Ser802Ile	p.S802I	ENST00000310581	NM_198253.2	802	aGc/aTc																																																																															
SDHA	6389	MSKCC	GRCh37	5	223661	223661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			484	49	285	0	ENST00000264932.6:c.128C>T	p.Ala43Val	p.A43V	ENST00000264932	NM_004168.2	43	gCa/gTa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564685	86564685	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			423	33	395	0	ENST00000274376.6:c.417del	p.Pro141LeufsTer33	p.P141Lfs*33	ENST00000274376	NM_002890.2	139	ccT/cc																																																																															
TRIP13	9319	MSKCC	GRCh37	5	914584	914584	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			527	59	360	0	ENST00000166345.3:c.1025A>G	p.Gln342Arg	p.Q342R	ENST00000166345	NM_004237.3	342	cAg/cGg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106536080	106536080	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751305148		P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			593	82	463	0	ENST00000369096.4:c.47C>T	p.Ala16Val	p.A16V	ENST00000369096	NM_001198.3	16	gCc/gTc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553110	106553110	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			463	207	481	2	ENST00000369096.4:c.1075A>G	p.Thr359Ala	p.T359A	ENST00000369096	NM_001198.3	359	Acg/Gcg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001125	150001125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			338	52	413	0	ENST00000253339.5:c.2479A>G	p.Arg827Gly	p.R827G	ENST00000253339		827	Aga/Gga																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023082	150023082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			517	50	402	0	ENST00000253339.5:c.181G>A	p.Asp61Asn	p.D61N	ENST00000253339		61	Gat/Aat																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528046	157528046	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			630	83	563	0	ENST00000346085.5:c.5771G>T	p.Arg1924Met	p.R1924M	ENST00000346085	NM_020732.3	1924	aGg/aTg																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31236948	31236948	+	stop_lost,splice_region_variant	Nonstop_Mutation	SNP	A	A	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			411	52	354	0	ENST00000376228.5:c.1099T>C	p.Ter367ArgextTer41	p.*367Rext*41	ENST00000376228	NM_002117.5	367	Tga/Cga																																																																															
MET	4233	MSKCC	GRCh37	7	116340127	116340127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			391	60	353	0	ENST00000397752.3:c.989C>A	p.Ala330Asp	p.A330D	ENST00000397752	NM_000245.2	330	gCt/gAt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978437	2978437	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			409	76	365	0	ENST00000396946.4:c.893A>G	p.Asp298Gly	p.D298G	ENST00000396946	NM_032415.4	298	gAc/gGc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739836	41739836	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			482	78	501	0	ENST00000242208.4:c.137A>T	p.Asp46Val	p.D46V	ENST00000242208	NM_002192.2	46	gAt/gTt																																																																															
PMS2	5395	MSKCC	GRCh37	7	6045648	6045648	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			93	12	66	0	ENST00000265849.7:c.38A>G	p.Lys13Arg	p.K13R	ENST00000265849	NM_000535.5	13	aAg/aGg																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127923185	127923185	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			281	36	260	0	ENST00000373547.4:c.172T>G	p.Phe58Val	p.F58V	ENST00000373547	NM_002721.4	58	Ttt/Gtt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139392008	139392008	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	53	343	0	ENST00000277541.6:c.6183G>T	p.Glu2061Asp	p.E2061D	ENST00000277541	NM_017617.3	2061	gaG/gaT																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400177	139400178	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	72	458	0	ENST00000277541.6:c.4170dup	p.Cys1391LeufsTer14	p.C1391Lfs*14	ENST00000277541	NM_017617.3	1390	-/C																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2033048	2033048	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			421	154	463	0	ENST00000349721.2:c.322C>A	p.Pro108Thr	p.P108T	ENST00000349721	NM_003070.3	108	Cct/Act																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2097388	2097388	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			290	43	281	0	ENST00000349721.2:c.2995A>G	p.Lys999Glu	p.K999E	ENST00000349721	NM_003070.3	999	Aaa/Gaa																																																																															
TEK	7010	MSKCC	GRCh37	9	27190613	27190613	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			375	126	419	0	ENST00000380036.4:c.1414G>T	p.Gly472Trp	p.G472W	ENST00000380036	NM_000459.3	472	Ggg/Tgg																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882050	36882051	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	91	426	2	ENST00000358127.4:c.963dup	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	ccc/ccCc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460549	8460550	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			496	81	373	0	ENST00000356435.5:c.3736dup	p.Tyr1246LeufsTer18	p.Y1246Lfs*18	ENST00000356435		1246	tac/tTac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44928911	44928911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			177	71	172	0	ENST00000377967.4:c.2011G>A	p.Ala671Thr	p.A671T	ENST00000377967	NM_021140.2	671	Gca/Aca																																																																															
AMER1	139285	MSKCC	GRCh37	X	63409784	63409784	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			186	51	199	0	ENST00000330258.3:c.3383C>A	p.Ala1128Asp	p.A1128D	ENST00000330258	NM_152424.3	1128	gCc/gAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412289	63412289	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			235	75	293	0	ENST00000330258.3:c.878T>C	p.Val293Ala	p.V293A	ENST00000330258	NM_152424.3	293	gTa/gCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0075768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	65	99	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0075768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	205	456	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162747	47162747	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	195	177	0	ENST00000409792.3:c.3379C>G	p.Gln1127Glu	p.Q1127E	ENST00000409792	NM_014159.6	1127	Caa/Gaa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52676029	52676029	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0075768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	112	175	0	ENST00000394830.3:c.1028C>G	p.Ser343Ter	p.S343*	ENST00000394830	NM_018313.4	343	tCa/tGa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152420072	152420072	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1436999383		P-0075768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	74	353	0	ENST00000206249.3:c.1759G>A	p.Glu587Lys	p.E587K	ENST00000206249	NM_000125.3	587	Gag/Aag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218684	36218684	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	197	469	0	ENST00000222270.7:c.4388C>A	p.Ser1463Tyr	p.S1463Y	ENST00000222270	NM_014727.1	1463	tCt/tAt																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246021895	246021895	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs762602003		P-0075768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	82	249	0	ENST00000388985.4:c.979C>T	p.Gln327Ter	p.Q327*	ENST00000388985		327	Cag/Tag																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38955780	38955780	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	40	139	0	ENST00000357387.3:c.2526G>C	p.Leu842Phe	p.L842F	ENST00000357387	NM_152756.3	842	ttG/ttC																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53250074	53250074	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	166	354	0	ENST00000375401.3:c.175G>T	p.Glu59Ter	p.E59*	ENST00000375401	NM_004187.3	59	Gaa/Taa																																																																															
RARA	5914	MSKCC	GRCh37	17	38511563	38511563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	80	337	0	ENST00000254066.5:c.1061C>T	p.Pro354Leu	p.P354L	ENST00000254066	NM_000964.3	354	cCg/cTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118927	115118928	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0075768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	81	231	0	ENST00000257566.3:c.413_414del	p.Val138GlufsTer7	p.V138Efs*7	ENST00000257566	NM_016569.3	138	gTG/g																																																																															
SETD2	29072	MSKCC	GRCh37	3	47108581	47108581	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	130	117	0	ENST00000409792.3:c.6088C>G	p.Gln2030Glu	p.Q2030E	ENST00000409792	NM_014159.6	2030	Caa/Gaa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210701	5210701	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	189	396	0	ENST00000357368.4:c.5350G>C	p.Glu1784Gln	p.E1784Q	ENST00000357368	NM_002850.3	1784	Gag/Cag																																																																															
POT1	25913	MSKCC	GRCh37	7	124499103	124499103	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	152	175	0	ENST00000357628.3:c.610G>C	p.Glu204Gln	p.E204Q	ENST00000357628	NM_015450.2	204	Gaa/Caa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845282	151845282	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	157	379	0	ENST00000262189.6:c.13730del	p.Pro4577LeufsTer49	p.P4577Lfs*49	ENST00000262189	NM_170606.2	4577	cCt/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1131691013		P-0075785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	100	319	0	ENST00000269305.4:c.389T>C	p.Leu130Pro	p.L130P	ENST00000269305	NM_001126112.2	130	cTc/cCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	55	221	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891173	101891173	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs387906696		P-0075785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	81	274	0	ENST00000374994.4:c.134A>G	p.Asn45Ser	p.N45S	ENST00000374994	NM_004612.2	45	aAt/aGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68842656	68842656	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1308439785		P-0075785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	116	349	0	ENST00000261769.5:c.592G>A	p.Asp198Asn	p.D198N	ENST00000261769	NM_004360.3	198	Gac/Aac																																																																															
IRF4	3662	MSKCC	GRCh37	6	397157	397157	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs747437180		P-0075785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	101	309	0	ENST00000380956.4:c.542A>G	p.Tyr181Cys	p.Y181C	ENST00000380956	NM_001195286.1	181	tAc/tGc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967182	134967182	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	65	299	0	ENST00000398015.3:c.2521T>C	p.Tyr841His	p.Y841H	ENST00000398015	NM_004441.4	841	Tac/Cac																																																																															
MGA	23269	MSKCC	GRCh37	15	42028488	42028488	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	80	314	0	ENST00000219905.7:c.4026C>A	p.Cys1342Ter	p.C1342*	ENST00000219905	NM_001164273.1	1342	tgC/tgA																																																																															
CDH1	999	MSKCC	GRCh37	16	68835574	68835590	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GAATTTTGAAGATTGCA	GAATTTTGAAGATTGCA	-			P-0075802-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			38	331	354	0	ENST00000261769.5:c.165_181del	p.Asn56ArgfsTer32	p.N56Rfs*32	ENST00000261769	NM_004360.3	55	gtGAATTTTGAAGATTGCAcc/gtcc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115872	8115873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0075802-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			521	458	446	0	ENST00000346208.3:c.1219dup	p.Ser407PhefsTer100	p.S407Ffs*100	ENST00000346208		406	-/T																																																																															
APC	324	MSKCC	GRCh37	5	112174784	112174784	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0075823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			376	273	288	1	ENST00000257430.4:c.3493A>T	p.Lys1165Ter	p.K1165*	ENST00000257430	NM_000038.5	1165	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0075823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			402	146	183	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591894	48591894	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			207	311	361	0	ENST00000342988.3:c.1057T>G	p.Tyr353Asp	p.Y353D	ENST00000342988	NM_005359.5	353	Tac/Gac																																																																															
ROS1	6098	MSKCC	GRCh37	6	117715382	117715382	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	298	260	0	ENST00000368508.3:c.1107T>G	p.Ile369Met	p.I369M	ENST00000368508	NM_002944.2	369	atT/atG																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244227	153244228	+	missense_variant	Missense_Mutation	DNP	CA	CA	TT			P-0075823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			392	275	314	0	ENST00000281708.4:c.1929_1930delinsAA	p.Asp643_Gly644delinsGluArg	p.D643_G644delinsER	ENST00000281708	NM_033632.3	643	gaTGga/gaAAga																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2225413	2225413	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	112	251	0	ENST00000398665.3:c.3623C>A	p.Ser1208Tyr	p.S1208Y	ENST00000398665	NM_032482.2	1208	tCc/tAc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58725280	58725280	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075823-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			604	113	285	0	ENST00000305921.3:c.854G>C	p.Ser285Thr	p.S285T	ENST00000305921	NM_003620.3	285	aGt/aCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0075901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	230	316	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022748	31022748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	61	334	0	ENST00000375687.4:c.2233G>A	p.Asp745Asn	p.D745N	ENST00000375687	NM_015338.5	745	Gat/Aat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830524	72830548	+	frameshift_variant	Frame_Shift_Del	DEL	GGCAAACCTCTCGAGCTGTTTGAAA	GGCAAACCTCTCGAGCTGTTTGAAA	CCTTTT			P-0075901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	112	314	0	ENST00000268489.5:c.6033_6057delinsAAAAGG	p.Phe2012LysfsTer15	p.F2012Kfs*15	ENST00000268489	NM_006885.3	2011	ccTTTCAAACAGCTCGAGAGGTTTGCC/ccAAAAGG																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149504295	149504295	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075903-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	34	337	0	ENST00000261799.4:c.1907T>G	p.Leu636Arg	p.L636R	ENST00000261799	NM_002609.3	636	cTt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	316	301	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs760043106		P-0075944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	86	367	0	ENST00000269305.4:c.584T>G	p.Ile195Ser	p.I195S	ENST00000269305	NM_001126112.2	195	aTc/aGc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141542189	141542189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	255	262	0	ENST00000220592.5:c.2534C>T	p.Ala845Val	p.A845V	ENST00000220592	NM_012154.3	845	gCg/gTg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275843	38275843	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781608303		P-0075944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	92	346	2	ENST00000425967.3:c.1426C>T	p.Arg476Trp	p.R476W	ENST00000425967	NM_001174067.1	476	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0075944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	227	243	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	11	264	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075947-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	34	475	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0075947-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	37	393	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0075949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	23	401	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714654	52714654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	22	454	0	ENST00000322088.6:c.412G>A	p.Gly138Ser	p.G138S	ENST00000322088	NM_014225.5	138	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075958-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	218	201	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0075958-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	280	315	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075958-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	137	267	0	ENST00000304494.5:c.172del	p.Arg58GlufsTer88	p.R58Efs*88	ENST00000304494	NM_000077.4	58	Cga/ga																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0075961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	94	234	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0075961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	105	396	0	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
SETD2	29072	MSKCC	GRCh37	3	47165062	47165062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	46	308	0	ENST00000409792.3:c.1064C>T	p.Ser355Leu	p.S355L	ENST00000409792	NM_014159.6	355	tCa/tTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	23	257	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212522542	212522542	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	33	337	0	ENST00000342788.4:c.1883C>A	p.Pro628His	p.P628H	ENST00000342788	NM_005235.2	628	cCc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42021419	42021419	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	54	305	0	ENST00000219905.7:c.3715G>T	p.Ala1239Ser	p.A1239S	ENST00000219905	NM_001164273.1	1239	Gct/Tct																																																																															
RET	5979	MSKCC	GRCh37	10	43613924	43613924	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	26	226	0	ENST00000355710.3:c.2388G>C	p.Gln796His	p.Q796H	ENST00000355710	NM_020975.4	796	caG/caC																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182213	99182213	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs984538193		P-0075963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	72	284	0	ENST00000074304.5:c.2278G>A	p.Val760Ile	p.V760I	ENST00000074304	NM_001134224.1	760	Gtc/Atc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916940	178916943	+	protein_altering_variant	In_Frame_Del	DEL	AGAA	AGAA	G			P-0075963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	17	284	0	ENST00000263967.3:c.327_330delinsG	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	gaAGAA/gaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075964-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	74	243	0	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118352511	118352511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075964-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	79	267	0	ENST00000534358.1:c.3716A>G	p.Asp1239Gly	p.D1239G	ENST00000534358	NM_005933.3	1239	gAc/gGc																																																																															
BLM	641	MSKCC	GRCh37	15	91312362	91312362	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0075964-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	27	185	0	ENST00000355112.3:c.2308-1G>C		p.X770_splice	ENST00000355112	NM_000057.2	770																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15311669	15311670	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075964-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	44	316	0	ENST00000263388.2:c.47_48insT	p.Pro17AlafsTer58	p.P17Afs*58	ENST00000263388	NM_000435.2	16	tcg/tcTg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56400805	56400805	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0075964-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	27	184	0	ENST00000348428.3:c.1399A>T	p.Arg467Ter	p.R467*	ENST00000348428	NM_006785.3	467	Aga/Tga																																																																															
CIC	23152	MSKCC	GRCh37	19	42791802	42791802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075964-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	44	382	0	ENST00000575354.2:c.688G>C	p.Val230Leu	p.V230L	ENST00000575354	NM_015125.3	230	Gtc/Ctc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0075996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	50	467	1	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148523725	148523725	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0075996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	35	272	0	ENST00000320356.2:c.729-1G>C		p.X243_splice	ENST00000320356	NM_004456.4	243																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	30	259	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749531	41749531	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	23	342	0	ENST00000226382.2:c.264C>G	p.Asp88Glu	p.D88E	ENST00000226382	NM_003924.3	88	gaC/gaG																																																																															
RB1	5925	MSKCC	GRCh37	13	49033857	49033857	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	42	361	0	ENST00000267163.4:c.1996del	p.Cys666ValfsTer11	p.C666Vfs*11	ENST00000267163	NM_000321.2	665	cTt/ct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0075998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	8957	284	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577071	7577079	+	frameshift_variant	Frame_Shift_Del	DEL	GAGATTCTC	GAGATTCTC	T			P-0075998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	117	350	0	ENST00000269305.4:c.859_867delinsA	p.Glu287ThrfsTer16	p.E287Tfs*16	ENST00000269305	NM_001126112.2	287	GAGAATCTC/A																																																																															
MITF	4286	MSKCC	GRCh37	3	69985878	69985878	+	intron_variant	Intron	SNP	T	T	G			P-0075998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	79	167	0	ENST00000352241.4:c.355-1095T>G		p.*119*	ENST00000352241	NM_198159.2																																																																																	
TCF7L2	6934	MSKCC	GRCh37	10	114920447	114920447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	326	277	0	ENST00000543371.1:c.1388G>A	p.Cys463Tyr	p.C463Y	ENST00000543371	NM_001198531.1	463	tGc/tAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212570063	212570063	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746784831		P-0076002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	189	272	0	ENST00000342788.4:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000342788	NM_005235.2	393	cGg/cAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118924	70118926	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0076002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	296	504	0	ENST00000245479.2:c.499_501del	p.Lys167del	p.K167del	ENST00000245479	NM_000346.3	166	AAG/-																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914206	32914206	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs80358796		P-0076002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	219	352	0	ENST00000380152.3:c.5714A>G	p.His1905Arg	p.H1905R	ENST00000380152		1905	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	218	225	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KDR	3791	MSKCC	GRCh37	4	55948122	55948122	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0076002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	82	167	0	ENST00000263923.4:c.3848+1G>T		p.X1283_splice	ENST00000263923	NM_002253.2	1283																																																																																
SPEN	23013	MSKCC	GRCh37	1	16237641	16237641	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076003-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	82	316	0	ENST00000375759.3:c.1088G>T	p.Gly363Val	p.G363V	ENST00000375759	NM_015001.2	363	gGa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0076003-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	171	251	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602572	10602572	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076003-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	195	427	0	ENST00000171111.5:c.1006C>T	p.Arg336Ter	p.R336*	ENST00000171111	NM_203500.1	336	Cga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1220371	1220371	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0076003-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	190	424	0	ENST00000326873.7:c.465-1G>C		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
POLD1	5424	MSKCC	GRCh37	19	50906845	50906845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076003-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	121	283	0	ENST00000440232.2:c.1233G>T	p.Gln411His	p.Q411H	ENST00000440232	NM_002691.3	411	caG/caT																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222991	53222991	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076003-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	155	191	0	ENST00000375401.3:c.4081G>C	p.Glu1361Gln	p.E1361Q	ENST00000375401	NM_004187.3	1361	Gag/Cag																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150923371	150923371	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs777467787		P-0076003-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	363	434	0	ENST00000271640.5:c.2018A>G	p.Tyr673Cys	p.Y673C	ENST00000271640	NM_001145415.1	673	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112174833	112174833	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0076003-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	187	409	0	ENST00000257430.4:c.3542T>G	p.Leu1181Ter	p.L1181*	ENST00000257430	NM_000038.5	1181	tTa/tGa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8525021	8525021	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs528492752		P-0076003-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	116	248	0	ENST00000356435.5:c.583G>A	p.Glu195Lys	p.E195K	ENST00000356435		195	Gag/Aag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880986	37880987	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGTGATGGCTTC			P-0076005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	54	493	0	ENST00000269571.5:c.2325_2326insTCCGTGATGGCT	p.Ala775_Gly776insSerValMetAla	p.A775_G776insSVMA	ENST00000269571		772	tac/taCGTGATGGCTTCc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56390469	56390469	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	11	306	0	ENST00000348428.3:c.1208A>G	p.Asp403Gly	p.D403G	ENST00000348428	NM_006785.3	403	gAc/gGc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3830778	3830778	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	35	424	0	ENST00000262367.5:c.1778A>G	p.His593Arg	p.H593R	ENST00000262367	NM_004380.2	593	cAc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578179	7578179	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0076013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	139	616	0	ENST00000269305.4:c.670G>T	p.Glu224Ter	p.E224*	ENST00000269305	NM_001126112.2	224	Gag/Tag																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514329	69514329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	107	514	0	ENST00000294312.3:c.352G>A	p.Glu118Lys	p.E118K	ENST00000294312	NM_005117.2	118	Gaa/Aaa																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728779	190728779	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61736573		P-0076013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	53	383	0	ENST00000441310.2:c.2167G>A	p.Glu723Lys	p.E723K	ENST00000441310	NM_000534.4	723	Gaa/Aaa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528036	157528036	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	91	575	0	ENST00000346085.5:c.5761G>T	p.Asp1921Tyr	p.D1921Y	ENST00000346085	NM_020732.3	1921	Gac/Tac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921482	178921482	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	24	367	0	ENST00000263967.3:c.964A>T	p.Thr322Ser	p.T322S	ENST00000263967	NM_006218.2	322	Aca/Tca																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42851170	42851170	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	44	350	0	ENST00000398585.3:c.723C>G	p.Ser241Arg	p.S241R	ENST00000398585	NM_001135099.1	241	agC/agG																																																																															
BRCA1	672	MSKCC	GRCh37	17	41197752	41197752	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs80356977		P-0076013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	239	582	0	ENST00000357654.3:c.5535C>A	p.Tyr1845Ter	p.Y1845*	ENST00000357654	NM_007294.3	1845	taC/taA																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1795686	1795686	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1479502935		P-0076013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	62	796	0	ENST00000260795.2:c.25G>A	p.Ala9Thr	p.A9T	ENST00000260795		9	Gcg/Acg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	82	225	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274114	10274114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	176	342	0	ENST00000330684.3:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000330684	NM_001134407.1	52	cGa/cAa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436149	56436149	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	172	387	0	ENST00000407977.2:c.988C>T	p.Arg330Ter	p.R330*	ENST00000407977		330	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501191		P-0076017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	198	351	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18656326	18656326	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1416159606		P-0076017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	78	286	0	ENST00000266497.5:c.3005A>G	p.Asn1002Ser	p.N1002S	ENST00000266497		1002	aAc/aGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593517	48593517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	158	286	0	ENST00000342988.3:c.1268G>A	p.Gly423Glu	p.G423E	ENST00000342988	NM_005359.5	423	gGa/gAa																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031334	11031334	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0076017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	175	434	0	ENST00000327064.4:c.1335-1G>C		p.X445_splice	ENST00000327064	NM_199141.1	445																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212426759	212426759	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1209728940		P-0076017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	130	295	0	ENST00000342788.4:c.2356G>A	p.Val786Met	p.V786M	ENST00000342788	NM_005235.2	786	Gtg/Atg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156559	55156559	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	171	365	0	ENST00000257290.5:c.2960C>A	p.Ala987Glu	p.A987E	ENST00000257290	NM_006206.4	987	gCa/gAa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176639041	176639041	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0076017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	190	317	0	ENST00000439151.2:c.3641T>G	p.Leu1214Arg	p.L1214R	ENST00000439151	NM_022455.4	1214	cTt/cGt																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045920	26045920	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	145	482	0	ENST00000540144.1:c.282G>C	p.Gln94His	p.Q94H	ENST00000540144	NM_003531.2	94	caG/caC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0076024-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	64	270	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0076024-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	98	285	0	ENST00000346208.3:c.1300dup	p.His434ProfsTer73	p.H434Pfs*73	ENST00000346208		433	cac/caCc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115898	8115899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0076024-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	20	330	0	ENST00000346208.3:c.1245dup	p.Leu416AlafsTer91	p.L416Afs*91	ENST00000346208		415	atg/atGg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152415579	152415579	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs762742833		P-0076024-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	81	284	0	ENST00000206249.3:c.1429C>T	p.Arg477Ter	p.R477*	ENST00000206249	NM_000125.3	477	Cga/Tga																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71090515	71090515	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076024-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	85	287	0	ENST00000318789.4:c.833del	p.Asn278MetfsTer47	p.N278Mfs*47	ENST00000318789	NM_032682.5	278	aAt/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0076026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	102	313	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
CDK4	1019	MSKCC	GRCh37	12	58144851	58144851	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1401142797		P-0076026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	121	478	0	ENST00000257904.6:c.377G>C	p.Arg126Thr	p.R126T	ENST00000257904	NM_000075.3	126	aGa/aCa																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349211	11349211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1306590732		P-0076026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	27	483	1	ENST00000332029.2:c.125G>A	p.Cys42Tyr	p.C42Y	ENST00000332029	NM_003745.1	42	tGc/tAc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41201143	41201143	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	94	326	0	ENST00000357654.3:c.5401G>C	p.Gly1801Arg	p.G1801R	ENST00000357654	NM_007294.3	1801	Ggc/Cgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0076030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	64	254	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845358	42845358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	47	254	0	ENST00000398585.3:c.904G>A	p.Gly302Arg	p.G302R	ENST00000398585	NM_001135099.1	302	Ggg/Agg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0076034-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	83	267	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0076034-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	171	377	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440904	56440904	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1458799446		P-0076034-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	172	354	0	ENST00000407977.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000407977		145	Cga/Tga																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736302	243736302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076034-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	198	332	0	ENST00000263826.5:c.745C>T	p.Arg249Cys	p.R249C	ENST00000263826	NM_005465.4	249	Cgt/Tgt																																																																															
ERG	2078	MSKCC	GRCh37	21	39755705	39755705	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs547051424		P-0076034-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	79	286	0	ENST00000288319.7:c.1060C>T	p.Arg354Trp	p.R354W	ENST00000288319	NM_182918.3	354	Cgg/Tgg																																																																															
KDR	3791	MSKCC	GRCh37	4	55974054	55974054	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076034-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	79	268	0	ENST00000263923.4:c.1262C>A	p.Pro421His	p.P421H	ENST00000263923	NM_002253.2	421	cCc/cAc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39021196	39021196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076034-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	83	258	0	ENST00000357387.3:c.140G>A	p.Arg47Lys	p.R47K	ENST00000357387	NM_152756.3	47	aGa/aAa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193172940	193172940	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1244272523		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	73	292	0	ENST00000367435.3:c.988C>T	p.Arg330Trp	p.R330W	ENST00000367435	NM_024529.4	330	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	106	365	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	83	327	1	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114917814	114917814	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751365426		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	280	246	0	ENST00000543371.1:c.1304C>T	p.Pro435Leu	p.P435L	ENST00000543371	NM_001198531.1	435	cCg/cTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	236	232	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115780	8115780	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	108	315	0	ENST00000346208.3:c.1131del	p.Val378CysfsTer26	p.V378Cfs*26	ENST00000346208		376	Aaa/aa																																																																															
ATM	472	MSKCC	GRCh37	11	108181038	108181038	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	52	228	0	ENST00000278616.4:c.5917del	p.Arg1973GlufsTer17	p.R1973Efs*17	ENST00000278616	NM_000051.3	1972	Aaa/aa																																																																															
ATM	472	MSKCC	GRCh37	11	108196879	108196880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs773570504		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	78	255	0	ENST00000278616.4:c.6908dup	p.Glu2304GlyfsTer69	p.E2304Gfs*69	ENST00000278616	NM_000051.3	2301	gca/gcAa																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742823	17742823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	27	215	0	ENST00000250003.3:c.731C>T	p.Ala244Val	p.A244V	ENST00000250003	NM_002478.4	244	gCg/gTg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129427	64129427	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367990117		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	124	321	0	ENST00000334205.4:c.859G>A	p.Ala287Thr	p.A287T	ENST00000334205	NM_003942.2	287	Gcg/Acg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	79	326	5	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	73	314	1	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	76	218	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	70	221	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	239	325	7	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	431719	431719	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs768653465		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	175	281	0	ENST00000399788.2:c.2290C>T	p.Arg764Ter	p.R764*	ENST00000399788	NM_001042603.1	764	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445500	49445500	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs886042284		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	107	303	0	ENST00000301067.7:c.1966del	p.Leu656CysfsTer274	p.L656Cfs*274	ENST00000301067	NM_003482.3	656	Ctg/tg																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50490675	50490675	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1473235153		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	169	278	0	ENST00000394963.4:c.1312C>T	p.Arg438Trp	p.R438W	ENST00000394963	NM_003076.4	438	Cgg/Tgg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861870	57861870	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764631331		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	122	376	0	ENST00000228682.2:c.1171G>A	p.Ala391Thr	p.A391T	ENST00000228682	NM_005269.2	391	Gcc/Acc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436171	110436171	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs558236298		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	92	297	1	ENST00000375856.3:c.2230C>T	p.Arg744Cys	p.R744C	ENST00000375856	NM_003749.2	744	Cgc/Tgc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562577	21562577	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1395329857		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	66	194	0	ENST00000382592.4:c.1342C>T	p.Arg448Cys	p.R448C	ENST00000382592	NM_014572.2	448	Cgt/Tgt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73342925	73342925	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs774491006		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	87	236	0	ENST00000377767.4:c.1881del	p.Ala629LeufsTer2	p.A629Lfs*2	ENST00000377767	NM_014953.3	627	aaA/aa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30133025	30133025	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	117	237	0	ENST00000331968.5:c.576A>G	p.Ile192Met	p.I192M	ENST00000331968	NM_002742.2	192	atA/atG																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	112	297	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	107	306	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134598	2134598	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs45517340		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	45	389	0	ENST00000219476.3:c.4375C>T	p.Arg1459Ter	p.R1459*	ENST00000219476	NM_000548.3	1459	Cga/Tga																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222293	2222293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763973302		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	107	298	0	ENST00000326181.6:c.577C>T	p.Arg193Trp	p.R193W	ENST00000326181	NM_032271.2	193	Cgg/Tgg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016609	12016609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	99	295	0	ENST00000353533.5:c.745G>A	p.Gly249Ser	p.G249S	ENST00000353533	NM_003010.3	249	Ggc/Agc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15975531	15975531	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	97	246	0	ENST00000268712.3:c.3823C>T	p.Arg1275Ter	p.R1275*	ENST00000268712	NM_006311.3	1275	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435079	56435079	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	122	393	0	ENST00000407977.2:c.2058del	p.Ser687ValfsTer13	p.S687Vfs*13	ENST00000407977		686	ccC/cc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	220	349	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771831816		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	428	405	0	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63553975	63553976	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	445	310	0	ENST00000307078.5:c.763_764del	p.Leu255GlufsTer13	p.L255Efs*13	ENST00000307078	NM_004655.3	255	CTg/g																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1297203260		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	90	305	0	ENST00000245479.2:c.916del	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272337	15272337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs776990686		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	85	355	2	ENST00000263388.2:c.6102del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2034	ccC/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214812	36214812	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1014637026		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	125	260	0	ENST00000222270.7:c.3238G>A	p.Val1080Ile	p.V1080I	ENST00000222270	NM_014727.1	1080	Gtc/Atc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	113	372	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212423	5212423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768007031		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	96	332	0	ENST00000357368.4:c.4694C>T	p.Thr1565Met	p.T1565M	ENST00000357368	NM_002850.3	1565	aCg/aTg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190718675	190718675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	69	209	0	ENST00000441310.2:c.833A>G	p.His278Arg	p.H278R	ENST00000441310	NM_000534.4	278	cAt/cGt																																																																															
CASP8	841	MSKCC	GRCh37	2	202149799	202149799	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	117	348	0	ENST00000358485.4:c.1245del	p.Phe415LeufsTer26	p.F415Lfs*26	ENST00000358485	NM_001080125.1	414	Ttt/tt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505330	25505330	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745432645		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	173	298	0	ENST00000264709.3:c.428G>A	p.Arg143Gln	p.R143Q	ENST00000264709	NM_175629.2	143	cGa/cAa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703538	47703538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63749932		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	213	281	0	ENST00000233146.2:c.2038C>T	p.Arg680Ter	p.R680*	ENST00000233146	NM_000251.2	680	Cga/Tga																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719525	61719525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	237	300	0	ENST00000401558.2:c.1658G>A	p.Arg553His	p.R553H	ENST00000401558	NM_003400.3	553	cGt/cAt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264985	46264985	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	122	300	1	ENST00000371998.3:c.1860del	p.Lys620AsnfsTer18	p.K620Nfs*18	ENST00000371998		619	Aaa/aa																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279820	29279820	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1175167433		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	43	43	0	ENST00000544604.2:c.70del	p.Arg24AlafsTer98	p.R24Afs*98	ENST00000544604	NM_001206998.1	22	cgC/cg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446744	29446744	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1457204359		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	179	290	0	ENST00000544604.2:c.2575C>T	p.Arg859Ter	p.R859*	ENST00000544604	NM_001206998.1	859	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873104	134873104	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202048188		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	74	293	0	ENST00000398015.3:c.1408C>T	p.Arg470Trp	p.R470W	ENST00000398015	NM_004441.4	470	Cgg/Tgg																																																																															
ATR	545	MSKCC	GRCh37	3	142280136	142280136	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369434236		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	57	243	0	ENST00000350721.4:c.1298G>A	p.Arg433His	p.R433H	ENST00000350721	NM_001184.3	433	cGt/cAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	342	297	7	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47155454	47155454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	193	256	0	ENST00000409792.3:c.4627C>T	p.Arg1543Trp	p.R1543W	ENST00000409792	NM_014159.6	1543	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	105	269	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806181	1806181	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760502257		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	115	326	0	ENST00000260795.2:c.1206del	p.Lys403ArgfsTer29	p.K403Rfs*29	ENST00000260795		400	agC/ag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31451711	31451711	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372313396		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	166	254	0	ENST00000344624.3:c.2611C>T	p.Arg871Cys	p.R871C	ENST00000344624		871	Cgc/Tgc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31464435	31464435	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1471632102		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	45	297	1	ENST00000344624.3:c.2482del	p.Ile828TyrfsTer7	p.I828Yfs*7	ENST00000344624		828	Ata/ta																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	67	263	0	ENST00000303115.3:c.361del	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161262	56161262	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	67	242	0	ENST00000399503.3:c.1135del	p.Thr379LeufsTer2	p.T379Lfs*2	ENST00000399503	NM_005921.1	377	agA/ag																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	107	328	5	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001362	150001362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	192	337	0	ENST00000253339.5:c.2242G>A	p.Ala748Thr	p.A748T	ENST00000253339		748	Gct/Act																																																																															
POT1	25913	MSKCC	GRCh37	7	124503540	124503540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	67	281	0	ENST00000357628.3:c.410G>A	p.Arg137His	p.R137H	ENST00000357628	NM_015450.2	137	cGt/cAt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738644	145738644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs571684398		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	225	310	0	ENST00000428558.2:c.2420G>A	p.Arg807His	p.R807H	ENST00000428558	NM_004260.3	807	cGt/cAt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484164	8484164	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs766454892		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	106	279	0	ENST00000356435.5:c.3368T>C	p.Met1123Thr	p.M1123T	ENST00000356435		1123	aTg/aCg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8733834	8733834	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1050031711		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	196	258	0	ENST00000356435.5:c.10G>A	p.Val4Ile	p.V4I	ENST00000356435		4	Gta/Ata																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270530	98270530	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1057518664		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	59	238	0	ENST00000331920.6:c.114del	p.Leu39CysfsTer41	p.L39Cfs*41	ENST00000331920	NM_000264.3	38	ggG/gg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199525	16199525	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1201312983		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	128	321	0	ENST00000375759.3:c.298C>T	p.Arg100Cys	p.R100C	ENST00000375759	NM_015001.2	100	Cgt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16242650	16242650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	115	330	0	ENST00000375759.3:c.1271C>A	p.Pro424His	p.P424H	ENST00000375759	NM_015001.2	424	cCc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16265298	16265298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	98	346	0	ENST00000375759.3:c.10790C>T	p.Ala3597Val	p.A3597V	ENST00000375759	NM_015001.2	3597	gCt/gTt																																																																															
MYCL	4610	MSKCC	GRCh37	1	40367536	40367536	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1451256457		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	89	377	0	ENST00000397332.2:c.25G>T	p.Ala9Ser	p.A9S	ENST00000397332	NM_001033082.2	9	Gct/Tct																																																																															
MPL	4352	MSKCC	GRCh37	1	43805152	43805152	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	188	323	0	ENST00000372470.3:c.602A>G	p.His201Arg	p.H201R	ENST00000372470	NM_005373.2	201	cAc/cGc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726415	46726415	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	191	365	0	ENST00000371975.4:c.494G>A	p.Trp165Ter	p.W165*	ENST00000371975	NM_003579.3	165	tGg/tAg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858300	9858300	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	102	313	0	ENST00000330684.3:c.3101G>T	p.Arg1034Met	p.R1034M	ENST00000330684	NM_001134407.1	1034	aGg/aTg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11027434	11027434	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	55	333	0	ENST00000327064.4:c.1001A>G	p.Tyr334Cys	p.Y334C	ENST00000327064	NM_199141.1	334	tAt/tGt																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379686	17379686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	193	323	0	ENST00000359435.4:c.71G>A	p.Arg24Gln	p.R24Q	ENST00000359435	NM_001033549.1	24	cGg/cAg																																																																															
ALK	238	MSKCC	GRCh37	2	30143230	30143230	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	53	281	0	ENST00000389048.3:c.296T>G	p.Leu99Arg	p.L99R	ENST00000389048	NM_004304.4	99	cTc/cGc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702269	47702269	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28929483		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	191	284	0	ENST00000233146.2:c.1865C>T	p.Pro622Leu	p.P622L	ENST00000233146	NM_000251.2	622	cCa/cTa																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279855	29279855	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1169365862		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	28	96	0	ENST00000544604.2:c.101C>T	p.Pro34Leu	p.P34L	ENST00000544604	NM_001206998.1	34	cCg/cTg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279861	29279861	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1436183233		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	26	101	0	ENST00000544604.2:c.107C>T	p.Pro36Leu	p.P36L	ENST00000544604	NM_001206998.1	36	cCg/cTg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279867	29279867	+	protein_altering_variant	In_Frame_Ins	INS	C	C	TCGG			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	26	119	0	ENST00000544604.2:c.113delinsTCGG	p.Pro38delinsLeuGly	p.P38delinsLG	ENST00000544604	NM_001206998.1	38	cCg/cTCGGg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670885	134670885	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1343763078		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	85	265	0	ENST00000398015.3:c.796G>A	p.Ala266Thr	p.A266T	ENST00000398015	NM_004441.4	266	Gca/Aca																																																																															
ATR	545	MSKCC	GRCh37	3	142184001	142184001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	94	237	0	ENST00000350721.4:c.6979A>G	p.Lys2327Glu	p.K2327E	ENST00000350721	NM_001184.3	2327	Aag/Gag																																																																															
MST1	4485	MSKCC	GRCh37	3	49725010	49725010	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	82	276	0	ENST00000449682.2:c.334T>C	p.Cys112Arg	p.C112R	ENST00000449682	NM_020998.3	112	Tgt/Cgt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980506	1980506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	100	338	0	ENST00000382895.3:c.3968G>T	p.Cys1323Phe	p.C1323F	ENST00000382895	NM_133330.2	1323	tGc/tTc																																																																															
REST	5978	MSKCC	GRCh37	4	57796321	57796321	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	205	301	0	ENST00000309042.7:c.1297C>T	p.Arg433Ter	p.R433*	ENST00000309042	NM_005612.4	433	Cga/Tga																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149434827	149434827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	216	302	0	ENST00000286301.3:c.2627C>T	p.Ala876Val	p.A876V	ENST00000286301	NM_005211.3	876	gCc/gTc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522212	157522212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	89	367	0	ENST00000346085.5:c.4484G>A	p.Arg1495His	p.R1495H	ENST00000346085	NM_020732.3	1495	cGc/cAc																																																																															
MYC	4609	MSKCC	GRCh37	8	128750773	128750773	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	212	304	0	ENST00000377970.2:c.310G>T	p.Gly104Cys	p.G104C	ENST00000377970	NM_002467.4	104	Ggt/Tgt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968185	68968185	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201801050		P-0076035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	172	249	0	ENST00000288368.4:c.1214C>T	p.Thr405Met	p.T405M	ENST00000288368	NM_024870.2	405	aCg/aTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0076040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	76	279	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161950	47161951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0076040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	157	359	0	ENST00000409792.3:c.4175dup	p.Asn1392LysfsTer6	p.N1392Kfs*6	ENST00000409792	NM_014159.6	1392	aac/aaAc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42843733	42843733	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs758128660		P-0076040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	117	316	0	ENST00000398585.3:c.1186G>A	p.Asp396Asn	p.D396N	ENST00000398585	NM_001135099.1	396	Gac/Aac																																																																															
APC	324	MSKCC	GRCh37	5	112177357	112177360	+	frameshift_variant	Frame_Shift_Del	DEL	AAGA	AAGA	-			P-0076040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	141	375	0	ENST00000257430.4:c.6068_6071del	p.Arg2023ThrfsTer20	p.R2023Tfs*20	ENST00000257430	NM_000038.5	2022	tcAAGA/tc																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0076047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	162	255	0	ENST00000397752.3:c.3028G>T	p.Asp1010Tyr	p.D1010Y	ENST00000397752	NM_000245.2	1010	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577560	7577560	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057520002		P-0076047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	98	304	0	ENST00000269305.4:c.721T>C	p.Ser241Pro	p.S241P	ENST00000269305	NM_001126112.2	241	Tcc/Ccc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448455	49448455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			705	210	449	0	ENST00000301067.7:c.256G>C	p.Glu86Gln	p.E86Q	ENST00000301067	NM_003482.3	86	Gag/Cag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224174	36224174	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368273689		P-0076047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	71	342	0	ENST00000222270.7:c.6724G>A	p.Val2242Met	p.V2242M	ENST00000222270	NM_014727.1	2242	Gtg/Atg																																																																															
NF1	4763	MSKCC	GRCh37	17	29559089	29559089	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs1131691089		P-0076047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	15	75	0	ENST00000358273.4:c.3198-2A>G		p.X1066_splice	ENST00000358273	NM_001042492.2	1066																																																																																
TET1	80312	MSKCC	GRCh37	10	70405753	70405753	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs370462813		P-0076047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	110	219	0	ENST00000373644.4:c.3267G>C	p.Lys1089Asn	p.K1089N	ENST00000373644	NM_030625.2	1089	aaG/aaC																																																																															
RAD50	10111	MSKCC	GRCh37	5	131976472	131976472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	79	343	0	ENST00000265335.6:c.3727G>A	p.Glu1243Lys	p.E1243K	ENST00000265335		1243	Gaa/Aaa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040696	47040696	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	65	302	0	ENST00000329236.7:c.1097A>T	p.Tyr366Phe	p.Y366F	ENST00000329236	NM_001204466.1	366	tAt/tTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29559869	29559869	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	103	360	1	ENST00000358273.4:c.3467del	p.Asn1156ThrfsTer2	p.N1156Tfs*2	ENST00000358273	NM_001042492.2	1156	Aac/ac																																																																															
EZH1	2145	MSKCC	GRCh37	17	40872330	40872330	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	60	297	0	ENST00000428826.2:c.625C>G	p.Leu209Val	p.L209V	ENST00000428826		209	Ctg/Gtg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226375	2226375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	116	414	0	ENST00000326181.6:c.1988G>A	p.Ser663Asn	p.S663N	ENST00000326181	NM_032271.2	663	aGc/aAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602581	10602581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	79	495	1	ENST00000171111.5:c.997G>T	p.Gly333Cys	p.G333C	ENST00000171111	NM_203500.1	333	Ggc/Tgc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082896	16082896	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767711936		P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	39	277	0	ENST00000281043.3:c.710C>T	p.Pro237Leu	p.P237L	ENST00000281043	NM_005378.4	237	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	65	379	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907047	101907047	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	24	292	0	ENST00000374994.4:c.1007C>G	p.Ser336Ter	p.S336*	ENST00000374994	NM_004612.2	336	tCa/tGa																																																																															
STK11	6794	MSKCC	GRCh37	19	1218423	1218423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	65	441	0	ENST00000326873.7:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000326873	NM_000455.4	100	Caa/Taa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259760	16259760	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747967254		P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			813	60	514	0	ENST00000375759.3:c.7025G>A	p.Arg2342Gln	p.R2342Q	ENST00000375759	NM_015001.2	2342	cGa/cAa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411540	63411540	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			716	61	523	0	ENST00000330258.3:c.1627G>T	p.Glu543Ter	p.E543*	ENST00000330258	NM_152424.3	543	Gag/Tag																																																																															
ATRX	546	MSKCC	GRCh37	X	76937724	76937724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	16	366	0	ENST00000373344.5:c.3024G>T	p.Gln1008His	p.Q1008H	ENST00000373344	NM_000489.3	1008	caG/caT																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932974	39932974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			811	70	644	0	ENST00000378444.4:c.1625C>T	p.Ser542Leu	p.S542L	ENST00000378444	NM_001123385.1	542	tCa/tTa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36938140	36938140	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs559297734		P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	69	454	0	ENST00000361632.4:c.821G>T	p.Arg274Leu	p.R274L	ENST00000361632		274	cGt/cTt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054844	5054844	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	15	323	0	ENST00000381652.3:c.896C>A	p.Ser299Ter	p.S299*	ENST00000381652	NM_004972.3	299	tCa/tAa																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518449	69518449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	39	215	0	ENST00000294312.3:c.196G>T	p.Gly66Cys	p.G66C	ENST00000294312	NM_005117.2	66	Ggc/Tgc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250340	110250340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	68	396	0	ENST00000374672.4:c.335C>T	p.Ser112Leu	p.S112L	ENST00000374672	NM_004235.4	112	tCg/tTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403236	213403236	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	64	396	0	ENST00000342788.4:c.19C>A	p.Leu7Ile	p.L7I	ENST00000342788	NM_005235.2	7	Ctt/Att																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259643	16259643	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745949911		P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			787	74	504	0	ENST00000375759.3:c.6908G>A	p.Gly2303Glu	p.G2303E	ENST00000375759	NM_015001.2	2303	gGa/gAa																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30325909	30325909	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	33	428	0	ENST00000322652.5:c.2107G>T	p.Glu703Ter	p.E703*	ENST00000322652	NM_015355.2	703	Gaa/Taa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163434	32163434	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			998	77	507	0	ENST00000375023.3:c.5792G>C	p.Arg1931Pro	p.R1931P	ENST00000375023	NM_004557.3	1931	cGa/cCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540488	187540488	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	51	466	0	ENST00000441802.2:c.7252G>C	p.Asp2418His	p.D2418H	ENST00000441802	NM_005245.3	2418	Gac/Cac																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729596	162729596	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	45	409	0	ENST00000367921.3:c.682G>C	p.Gly228Arg	p.G228R	ENST00000367921	NM_006182.2	228	Ggg/Cgg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968298	134968298	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	40	415	0	ENST00000398015.3:c.2811C>A	p.Phe937Leu	p.F937L	ENST00000398015	NM_004441.4	937	ttC/ttA																																																																															
CARD11	84433	MSKCC	GRCh37	7	2957006	2957006	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	43	354	0	ENST00000396946.4:c.2621C>A	p.Pro874Gln	p.P874Q	ENST00000396946	NM_032415.4	874	cCa/cAa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163506	32163506	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			864	68	452	0	ENST00000375023.3:c.5720G>C	p.Gly1907Ala	p.G1907A	ENST00000375023	NM_004557.3	1907	gGa/gCa																																																																															
MSI1	4440	MSKCC	GRCh37	12	120795701	120795701	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	65	321	0	ENST00000257552.2:c.452G>T	p.Gly151Val	p.G151V	ENST00000257552	NM_002442.3	151	gGg/gTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509984	106509984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	38	425	0	ENST00000359195.3:c.1978C>A	p.Leu660Ile	p.L660I	ENST00000359195	NM_002649.2	660	Ctt/Att																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933012	39933012	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			796	66	650	0	ENST00000378444.4:c.1587C>G	p.Asn529Lys	p.N529K	ENST00000378444	NM_001123385.1	529	aaC/aaG																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317472	1317472	+	downstream_gene_variant	3'Flank	SNP	G	G	C	rs1198758871		P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	39	366	0				ENST00000381566																																																																																		
PIK3C3	5289	MSKCC	GRCh37	18	39609312	39609312	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1372394577		P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	40	332	0	ENST00000262039.4:c.1614G>T	p.Met538Ile	p.M538I	ENST00000262039	NM_002647.2	538	atG/atT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101931	11101931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			661	77	513	0	ENST00000344626.4:c.1351C>T	p.Arg451Cys	p.R451C	ENST00000344626	NM_003072.3	451	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0076056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	123	392	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134885846	134885846	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs770834786		P-0076056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	150	328	0	ENST00000398015.3:c.1757G>A	p.Arg586Gln	p.R586Q	ENST00000398015	NM_004441.4	586	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	224	249	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492831	56492832	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0076056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	315	368	0	ENST00000407977.2:c.107dup	p.Glu37GlyfsTer3	p.E37Gfs*3	ENST00000407977		36	gtg/gtTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0076059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	30	329	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
MYC	4609	MSKCC	GRCh37	8	128752929	128752929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	52	261	2	ENST00000377970.2:c.1090G>T	p.Asp364Tyr	p.D364Y	ENST00000377970	NM_002467.4	364	Gac/Tac																																																																															
MYC	4609	MSKCC	GRCh37	8	128750874	128750874	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	55	289	1	ENST00000377970.2:c.411G>C	p.Glu137Asp	p.E137D	ENST00000377970	NM_002467.4	137	gaG/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0076061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	180	308	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39914723	39914723	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	128	218	0	ENST00000378444.4:c.4639C>T	p.Arg1547Ter	p.R1547*	ENST00000378444	NM_001123385.1	1547	Cga/Tga																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11924261	11924262	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0076061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	116	292	0	ENST00000353533.5:c.63dup	p.Gly22ArgfsTer19	p.G22Rfs*19	ENST00000353533	NM_003010.3	20	acc/aCcc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99154412	99154412	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750703654		P-0076061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	127	237	0	ENST00000074304.5:c.554G>A	p.Arg185Gln	p.R185Q	ENST00000074304	NM_001134224.1	185	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0076061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	30	166	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581345	48581346	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0076061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	55	226	0	ENST00000342988.3:c.651dup	p.Pro218SerfsTer17	p.P218Sfs*17	ENST00000342988	NM_005359.5	217	att/aTtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0076064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	54	342	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112103078	112103081	+	frameshift_variant	Frame_Shift_Del	DEL	AGAA	AGAA	-			P-0076064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	28	129	0	ENST00000257430.4:c.416_419del	p.Lys139ArgfsTer30	p.K139Rfs*30	ENST00000257430	NM_000038.5	138	gAGAAa/ga																																																																															
APC	324	MSKCC	GRCh37	5	112175488	112175488	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	30	222	0	ENST00000257430.4:c.4198del	p.Ser1400ArgfsTer15	p.S1400Rfs*15	ENST00000257430	NM_000038.5	1399	cgT/cg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058733	180058733	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751762446		P-0076064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	93	287	0	ENST00000261937.6:c.104C>T	p.Thr35Met	p.T35M	ENST00000261937	NM_182925.4	35	aCg/aTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120491668	120491668	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	93	171	0	ENST00000256646.2:c.2561T>C	p.Phe854Ser	p.F854S	ENST00000256646	NM_024408.3	854	tTt/tCt																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40462546	40462549	+	frameshift_variant	Frame_Shift_Del	DEL	GGAT	GGAT	-			P-0076064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	45	269	0	ENST00000345506.4:c.2247_2250del	p.Asp749GlufsTer66	p.D749Efs*66	ENST00000345506	NM_003152.3	748	caGGAT/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578207	7578208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTCGAAAAG			P-0076064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	116	340	0	ENST00000269305.4:c.632_641dup	p.Ser215PhefsTer4	p.S215Ffs*4	ENST00000269305	NM_001126112.2	214	cat/caCTTTTCGACAt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0076066-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	115	247	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0076066-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	229	365	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120003	70120003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076066-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	388	330	0	ENST00000245479.2:c.1005G>A	p.Trp335Ter	p.W335*	ENST00000245479	NM_000346.3	335	tgG/tgA																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210703	5210703	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762760744		P-0076066-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	192	359	0	ENST00000357368.4:c.5348G>A	p.Arg1783Gln	p.R1783Q	ENST00000357368	NM_002850.3	1783	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs878854073		P-0076066-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	411	308	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48593388	48593388	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0076066-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	182	249	2	ENST00000342988.3:c.1140-1G>C		p.X380_splice	ENST00000342988	NM_005359.5	380																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0076068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	186	282	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
MDM2	4193	MSKCC	GRCh37	12	69203049	69203049	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1201	232	279	0	ENST00000462284.1:c.76C>G	p.Pro26Ala	p.P26A	ENST00000462284	NM_002392.5	26	Cca/Gca																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627631	14627632	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0076068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	42	365	0	ENST00000254322.2:c.438dup	p.Gly147TrpfsTer27	p.G147Wfs*27	ENST00000254322	NM_006145.1	146	-/T																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139563125	139563125	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs770792123		P-0076068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	54	268	0	ENST00000308874.7:c.197G>A	p.Arg66Gln	p.R66Q	ENST00000308874		66	cGa/cAa																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139565422	139565422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	66	179	0	ENST00000308874.7:c.592G>A	p.Glu198Lys	p.E198K	ENST00000308874		198	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	50	276	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	52	244	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59858368	59858368	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0076073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	57	211	0	ENST00000259008.2:c.1629-2A>C		p.X543_splice	ENST00000259008	NM_032043.2	543																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66467569	66467569	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	37	313	0	ENST00000273854.3:c.700C>A	p.Pro234Thr	p.P234T	ENST00000273854	NM_004439.5	234	Cct/Act																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436371	110436371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	124	604	0	ENST00000375856.3:c.2030C>T	p.Pro677Leu	p.P677L	ENST00000375856	NM_003749.2	677	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0076082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			29	70	406	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267481	198267481	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs769888451		P-0076082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			43	45	180	0	ENST00000335508.6:c.1876A>G	p.Asn626Asp	p.N626D	ENST00000335508	NM_012433.2	626	Aac/Gac																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865083	57865083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	60	522	0	ENST00000228682.2:c.2560C>T	p.Pro854Ser	p.P854S	ENST00000228682	NM_005269.2	854	Ccc/Tcc																																																																															
ATR	545	MSKCC	GRCh37	3	142254047	142254047	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0076082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	16	134	0	ENST00000350721.4:c.3820G>A	p.Glu1274Lys	p.E1274K	ENST00000350721	NM_001184.3	1274	Gag/Aag																																																																															
ARAF	369	MSKCC	GRCh37	X	47426390	47426390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	221	543	0	ENST00000377045.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000377045	NM_001654.4	245	Ggt/Agt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178947085	178947085	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	108	341	0	ENST00000263967.3:c.2521A>G	p.Ile841Val	p.I841V	ENST00000263967	NM_006218.2	841	Atc/Gtc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928063	178928077	+	inframe_deletion	In_Frame_Del	DEL	AGTACCTCATGGATT	AGTACCTCATGGATT	-			P-0076088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	75	380	0	ENST00000263967.3:c.1343_1357del	p.Val448_Leu452del	p.V448_L452del	ENST00000263967	NM_006218.2	447	ccAGTACCTCATGGATTa/cca																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0076090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	581	452	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0076090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	147	427	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060925	38060925	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1388855660		P-0076090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	160	474	0	ENST00000250448.2:c.1064C>T	p.Ser355Leu	p.S355L	ENST00000250448	NM_004496.3	355	tCa/tTa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347606	89347606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1013967207		P-0076090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	178	599	0	ENST00000301030.4:c.5344C>T	p.Pro1782Ser	p.P1782S	ENST00000301030	NM_001256183.1	1782	Cct/Tct																																																																															
CDC73	79577	MSKCC	GRCh37	1	193091459	193091459	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0076090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			894	158	415	0	ENST00000367435.3:c.129G>A	p.Trp43Ter	p.W43*	ENST00000367435	NM_024529.4	43	tgG/tgA																																																																															
CD276	80381	MSKCC	GRCh37	15	73996254	73996284	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCGTGTGGCGGACGAGGGCAGCTTCACCT	GTGCGTGTGGCGGACGAGGGCAGCTTCACCT	-			P-0076092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	67	69	0	ENST00000318443.5:c.989_1019del	p.Val330AlafsTer3	p.V330Afs*3	ENST00000318443	NM_001024736.1	330	GTGCGTGTGGCGGACGAGGGCAGCTTCACCTgc/gc																																																																															
NF1	4763	MSKCC	GRCh37	17	29556285	29556285	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	80	367	0	ENST00000358273.4:c.2652G>T	p.Glu884Asp	p.E884D	ENST00000358273	NM_001042492.2	884	gaG/gaT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433611	49433611	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	447	482	0	ENST00000301067.7:c.7942C>A	p.Pro2648Thr	p.P2648T	ENST00000301067	NM_003482.3	2648	Cca/Aca																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805383	32805383	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	188	383	0	ENST00000374899.4:c.539T>C	p.Leu180Pro	p.L180P	ENST00000374899	NM_018833.2	180	cTg/cCg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67593078	67593333	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGGGTTACCTACCCAAGGCACTCGGCCAGGTGTCAGTTGTAACCTAGGACCCTTTCCCCAAGTTGAGACTGCACAATAATGCTTTTTATTAAAGATGCCCTGAAGAGTTGTGAATTGTCTTGGACAAGCTCAAAAGACAGTTTTTCTTCTCTCCTCTCTAGGGTGGACGGCGAAGTAAAGCATTGTGTCATAAACAAAACAGCAACTGGCTATGGCTTTGCCGAGCCCTATAACTTGTACAGCTCTCTGAAAGAA	CTGGGTTACCTACCCAAGGCACTCGGCCAGGTGTCAGTTGTAACCTAGGACCCTTTCCCCAAGTTGAGACTGCACAATAATGCTTTTTATTAAAGATGCCCTGAAGAGTTGTGAATTGTCTTGGACAAGCTCAAAAGACAGTTTTTCTTCTCTCCTCTCTAGGGTGGACGGCGAAGTAAAGCATTGTGTCATAAACAAAACAGCAACTGGCTATGGCTTTGCCGAGCCCTATAACTTGTACAGCTCTCTGAAAGAA	-			P-0076092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			25	126	70	0	ENST00000274335.5:c.1986-158_2083del		p.X662_splice	ENST00000274335		662																																																																																
TBX3	6926	MSKCC	GRCh37	12	115112236	115112236	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1262430498		P-0076092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	309	374	0	ENST00000257566.3:c.1504G>A	p.Gly502Ser	p.G502S	ENST00000257566	NM_016569.3	502	Ggc/Agc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779237	3779237	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs913922950		P-0076092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	338	404	0	ENST00000262367.5:c.5811G>T	p.Lys1937Asn	p.K1937N	ENST00000262367	NM_004380.2	1937	aaG/aaT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828422	72828422	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	77	392	0	ENST00000268489.5:c.8159T>A	p.Phe2720Tyr	p.F2720Y	ENST00000268489	NM_006885.3	2720	tTc/tAc																																																																															
RB1	5925	MSKCC	GRCh37	13	48936950	48936951	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GA	GA	AG			P-0076092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	221	229	0	ENST00000267163.4:c.719-1_719delinsAG		p.X240_splice	ENST00000267163	NM_000321.2	240																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114905777	114905777	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076112-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	130	289	0	ENST00000543371.1:c.796C>T	p.Gln266Ter	p.Q266*	ENST00000543371	NM_001198531.1	266	Caa/Taa																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112888210	112888210	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121918464		P-0076112-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	13	348	0	ENST00000351677.2:c.226G>A	p.Glu76Lys	p.E76K	ENST00000351677	NM_002834.3	76	Gag/Aag																																																																															
FLT1	2321	MSKCC	GRCh37	13	29004241	29004241	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772440220		P-0076112-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	159	359	0	ENST00000282397.4:c.1052G>A	p.Arg351Gln	p.R351Q	ENST00000282397	NM_002019.4	351	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578255	7578255	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076112-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	231	549	0	ENST00000269305.4:c.594del	p.Gly199GlufsTer48	p.G199Efs*48	ENST00000269305	NM_001126112.2	198	gaA/ga																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367798	15367798	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144627512		P-0076112-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	111	372	0	ENST00000263377.2:c.1528C>T	p.Arg510Trp	p.R510W	ENST00000263377	NM_058243.2	510	Cgg/Tgg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47079255	47079255	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076112-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	194	402	0	ENST00000409792.3:c.7251G>A	p.Trp2417Ter	p.W2417*	ENST00000409792	NM_014159.6	2417	tgG/tgA																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610608	52610609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0076112-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	89	326	0	ENST00000394830.3:c.3564dup	p.Glu1189ArgfsTer6	p.E1189Rfs*6	ENST00000394830	NM_018313.4	1188	-/A																																																																															
AGO2	27161	MSKCC	GRCh37	8	141572597	141572597	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376660302		P-0076112-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	197	469	1	ENST00000220592.5:c.473C>T	p.Thr158Met	p.T158M	ENST00000220592	NM_012154.3	158	aCg/aTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89866012	89866012	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0076112-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	103	219	0	ENST00000389301.3:c.826+1G>A		p.X276_splice	ENST00000389301	NM_000135.2	276																																																																																
APC	324	MSKCC	GRCh37	5	112175452	112175452	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076112-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	351	383	0	ENST00000257430.4:c.4161del	p.Cys1387Ter	p.C1387*	ENST00000257430	NM_000038.5	1387	tgT/tg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986699	36986709	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCGCCTGCG	CGCCGCCTGCG	-			P-0076113-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	68	393	0	ENST00000354822.5:c.980_990del	p.Ala327GlyfsTer108	p.A327Gfs*108	ENST00000354822	NM_001079668.2	327	gCGCAGGCGGCG/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076113-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	61	166	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974726	21974775	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	GCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	-			P-0076113-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	20	517	0	ENST00000304494.5:c.52_101del	p.Thr18GlyfsTer9	p.T18Gfs*9	ENST00000304494	NM_000077.4	18	ACGGCCGCGGCCCGGGGTCGGGTAGAGGAGGTGCGGGCGCTGCTGGAGGCg/g																																																																															
XPO1	7514	MSKCC	GRCh37	2	61721040	61721040	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076113-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	69	149	0	ENST00000401558.2:c.1234A>T	p.Met412Leu	p.M412L	ENST00000401558	NM_003400.3	412	Atg/Ttg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670801	134670801	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076113-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	78	468	0	ENST00000398015.3:c.712C>G	p.Leu238Val	p.L238V	ENST00000398015	NM_004441.4	238	Ctc/Gtc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0076116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	12	372	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509879	187509879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	139	489	0	ENST00000441802.2:c.13634C>T	p.Ser4545Phe	p.S4545F	ENST00000441802	NM_005245.3	4545	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0076117-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	178	286	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0076117-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	11	187	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175219	112175219	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0076117-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	38	344	0	ENST00000257430.4:c.3928A>T	p.Lys1310Ter	p.K1310*	ENST00000257430	NM_000038.5	1310	Aag/Tag																																																																															
BLM	641	MSKCC	GRCh37	15	91354494	91354494	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs527291754		P-0076117-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	195	402	0	ENST00000355112.3:c.3934G>A	p.Ala1312Thr	p.A1312T	ENST00000355112	NM_000057.2	1312	Gct/Act																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178947865	178947865	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587776932		P-0076123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	362	340	4	ENST00000263967.3:c.2740G>A	p.Gly914Arg	p.G914R	ENST00000263967	NM_006218.2	914	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0076123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	340	399	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0076123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	212	137	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46511744	46511744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	149	171	0	ENST00000262741.5:c.1033G>A	p.Glu345Lys	p.E345K	ENST00000262741	NM_003629.3	345	Gag/Aag																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39074439	39074439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1298143494		P-0076123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	200	215	1	ENST00000357387.3:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000357387	NM_152756.3	14	cGa/cAa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0076123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	353	365	1	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
NF1	4763	MSKCC	GRCh37	17	29509525	29509525	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0076123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			44	223	256	3	ENST00000358273.4:c.731-1G>C		p.X244_splice	ENST00000358273	NM_001042492.2	244																																																																																
DICER1	23405	MSKCC	GRCh37	14	95572101	95572101	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1060503605		P-0076123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	224	274	2	ENST00000343455.3:c.3007C>T	p.Arg1003Ter	p.R1003*	ENST00000343455	NM_177438.2	1003	Cga/Tga																																																																															
SUFU	51684	MSKCC	GRCh37	10	104356902	104356904	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0076123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	258	265	4	ENST00000369902.3:c.762_764del	p.Arg254_Val255delinsSer	p.R254_V255delinsS	ENST00000369902	NM_016169.3	254	agAGTt/agt																																																																															
FYN	2534	MSKCC	GRCh37	6	112017503	112017503	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1447	273	304	0	ENST00000368678.4:c.1010T>A	p.Ile337Asn	p.I337N	ENST00000368678		337	aTc/aAc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422239	47422239	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	304	349	3	ENST00000404338.3:c.307C>T	p.Gln103Ter	p.Q103*	ENST00000404338	NM_004491.4	103	Cag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108186562	108186562	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			44	202	256	1	ENST00000278616.4:c.6019G>C	p.Glu2007Gln	p.E2007Q	ENST00000278616	NM_000051.3	2007	Gaa/Caa																																																																															
ATR	545	MSKCC	GRCh37	3	142274968	142274968	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	150	217	0	ENST00000350721.4:c.2092G>C	p.Asp698His	p.D698H	ENST00000350721	NM_001184.3	698	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0076124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	272	395	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681145	117681145	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1434469853		P-0076124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	98	296	0	ENST00000368508.3:c.3475C>T	p.Leu1159Phe	p.L1159F	ENST00000368508	NM_002944.2	1159	Ctt/Ttt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877996	151877996	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	145	365	0	ENST00000262189.6:c.6949C>A	p.Gln2317Lys	p.Q2317K	ENST00000262189	NM_170606.2	2317	Caa/Aaa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964491	70964491	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	64	424	0	ENST00000276594.2:c.1537G>T	p.Gly513Trp	p.G513W	ENST00000276594	NM_024504.3	513	Ggg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175430	112175431	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCA			P-0076124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	224	329	2	ENST00000257430.4:c.4141_4144dup	p.Leu1382ProfsTer5	p.L1382Pfs*5	ENST00000257430	NM_000038.5	1380	acc/acCCCAc																																																																															
CD276	80381	MSKCC	GRCh37	15	73991990	73991990	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1363489468		P-0076124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	121	376	0	ENST00000318443.5:c.10C>T	p.Arg4Trp	p.R4W	ENST00000318443	NM_001024736.1	4	Cgg/Tgg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30310122	30310122	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0076124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	26	69	0	ENST00000322652.5:c.1022A>T	p.Lys341Met	p.K341M	ENST00000322652	NM_015355.2	341	aAg/aTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11294225	11294225	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753826002		P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	45	513	0	ENST00000361445.4:c.2306G>A	p.Arg769His	p.R769H	ENST00000361445	NM_004958.3	769	cGc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255694	16255694	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376676096		P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	58	512	0	ENST00000375759.3:c.2959C>T	p.Arg987Cys	p.R987C	ENST00000375759	NM_015001.2	987	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	39	554	2	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36938271	36938271	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	43	553	0	ENST00000361632.4:c.690del	p.Met231CysfsTer32	p.M231Cfs*32	ENST00000361632		230	ccC/cc																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724715	112724715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	29	398	0	ENST00000369452.4:c.599G>A	p.Arg200His	p.R200H	ENST00000369452	NM_007373.3	200	cGc/cAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	81	425	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
CTR9	9646	MSKCC	GRCh37	11	10796810	10796811	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	30	476	0	ENST00000361367.2:c.2949dup	p.Arg984ThrfsTer35	p.R984Tfs*35	ENST00000361367	NM_014633.3	981	cca/ccAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118391565	118391565	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	44	414	1	ENST00000534358.1:c.11483del	p.Lys3828ArgfsTer31	p.K3828Rfs*31	ENST00000534358	NM_005933.3	3826	ttA/tt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112154	115112154	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	44	605	0	ENST00000257566.3:c.1586del	p.Gly529AlafsTer103	p.G529Afs*103	ENST00000257566	NM_016569.3	529	gGc/gc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913692	32913692	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786202543		P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	27	200	0	ENST00000380152.3:c.5200G>A	p.Glu1734Lys	p.E1734K	ENST00000380152		1734	Gaa/Aaa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483904	88483904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371770675		P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	47	480	0	ENST00000360948.2:c.1666G>A	p.Glu556Lys	p.E556K	ENST00000360948	NM_001012338.2	556	Gag/Aag																																																																															
STAT3	6774	MSKCC	GRCh37	17	40481442	40481442	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1290480970		P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	71	513	0	ENST00000264657.5:c.1267C>T	p.Arg423Ter	p.R423*	ENST00000264657	NM_139276.2	423	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7572991	7572991	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	40	482	0	ENST00000269305.4:c.1118del	p.Lys373ArgfsTer49	p.K373Rfs*49	ENST00000269305	NM_001126112.2	373	aAg/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	56	566	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11022948	11022948	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	22	395	0	ENST00000327064.4:c.647G>T	p.Ser216Ile	p.S216I	ENST00000327064	NM_199141.1	216	aGc/aTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	42	619	0	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47491270	47491270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	53	431	0	ENST00000404338.3:c.3851G>A	p.Arg1284Gln	p.R1284Q	ENST00000404338	NM_004491.4	1284	cGg/cAg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716301	52716301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	62	515	0	ENST00000322088.6:c.745C>T	p.Arg249Cys	p.R249C	ENST00000322088	NM_014225.5	249	Cgc/Tgc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39249914	39249914	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs397517154		P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	50	442	0	ENST00000402219.2:c.1655G>T	p.Arg552Met	p.R552M	ENST00000402219	NM_005633.3	552	aGg/aTg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	49	533	3	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61753559	61753559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	30	233	0	ENST00000401558.2:c.224C>T	p.Thr75Met	p.T75M	ENST00000401558	NM_003400.3	75	aCg/aTg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	56	476	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	53	236	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534356	187534356	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770029391		P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	65	474	1	ENST00000441802.2:c.9370G>A	p.Glu3124Lys	p.E3124K	ENST00000441802	NM_005245.3	3124	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	46	439	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	44	578	0	ENST00000257430.4:c.4393_4394dup	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931452	131931453	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	32	406	0	ENST00000265335.6:c.2164_2165del	p.Lys722GlyfsTer5	p.K722Gfs*5	ENST00000265335		719	ctAAaa/ctaa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176696690	176696691	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	46	504	0	ENST00000439151.2:c.5397dup	p.Gly1800TrpfsTer3	p.G1800Wfs*3	ENST00000439151	NM_022455.4	1797	-/T																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526322	31526322	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs970742651		P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	66	530	0	ENST00000344624.3:c.718C>T	p.Arg240Ter	p.R240*	ENST00000344624		240	Cga/Tga																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675438	30675438	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780670990		P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	67	603	1	ENST00000376406.3:c.2918C>T	p.Ala973Val	p.A973V	ENST00000376406	NM_014641.2	973	gCg/gTg																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36651934	36651934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779250316		P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	40	520	0	ENST00000244741.5:c.56G>A	p.Arg19His	p.R19H	ENST00000244741	NM_000389.4	19	cGc/cAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151846090	151846090	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756354376		P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	57	641	0	ENST00000262189.6:c.12922G>A	p.Ala4308Thr	p.A4308T	ENST00000262189	NM_170606.2	4308	Gcc/Acc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12037505	12037506	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	52	551	0	ENST00000396373.4:c.1138_1139del	p.Trp380GlyfsTer4	p.W380Gfs*4	ENST00000396373	NM_001987.4	379	cTG/c																																																																															
DIS3	22894	MSKCC	GRCh37	13	73343040	73343040	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199919016		P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	33	225	0	ENST00000377767.4:c.1766C>T	p.Thr589Met	p.T589M	ENST00000377767	NM_014953.3	589	aCg/aTg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100008	30100008	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	56	493	0	ENST00000331968.5:c.1612C>T	p.His538Tyr	p.H538Y	ENST00000331968	NM_002742.2	538	Cat/Tat																																																																															
CD276	80381	MSKCC	GRCh37	15	74005271	74005273	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	GAA	GAA	-			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	37	394	0	ENST00000318443.5:c.1583-2_1583del		p.X528_splice	ENST00000318443	NM_001024736.1	528																																																																																
CYLD	1540	MSKCC	GRCh37	16	50820780	50820780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	25	268	0	ENST00000398568.2:c.1955G>A	p.Cys652Tyr	p.C652Y	ENST00000398568	NM_001042412.1	652	tGt/tAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29486050	29486050	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1438566555		P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	47	211	0	ENST00000358273.4:c.233del	p.Asn78IlefsTer7	p.N78Ifs*7	ENST00000358273	NM_001042492.2	76	gAa/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951898	178951898	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	53	360	0	ENST00000263967.3:c.2953T>A	p.Tyr985Asn	p.Y985N	ENST00000263967	NM_006218.2	985	Tac/Aac																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067161	37067162	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	66	377	0	ENST00000231790.2:c.1074_1075del	p.Glu358AspfsTer3	p.E358Dfs*3	ENST00000231790	NM_000249.3	358	GAg/g																																																																															
RHOA	387	MSKCC	GRCh37	3	49397781	49397781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	45	494	2	ENST00000418115.1:c.443C>T	p.Ala148Val	p.A148V	ENST00000418115	NM_001664.2	148	gCa/gTa																																																																															
KDR	3791	MSKCC	GRCh37	4	55955631	55955631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	25	336	0	ENST00000263923.4:c.3314C>A	p.Pro1105Gln	p.P1105Q	ENST00000263923	NM_002253.2	1105	cCa/cAa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515375	149515375	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774107509		P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	36	558	0	ENST00000261799.4:c.107C>T	p.Thr36Ile	p.T36I	ENST00000261799	NM_002609.3	36	aCa/aTa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755677	57755677	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	59	502	0	ENST00000274289.3:c.110A>C	p.Gln37Pro	p.Q37P	ENST00000274289	NM_006622.3	37	cAg/cCg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157150397	157150397	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	39	494	0	ENST00000346085.5:c.1579C>T	p.Gln527Ter	p.Q527*	ENST00000346085	NM_020732.3	527	Cag/Tag																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910697	29910697	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	46	648	0	ENST00000376809.5:c.240del	p.Pro81ArgfsTer11	p.P81Rfs*11	ENST00000376809	NM_002116.7	79	gaG/ga																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323211	31323211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	63	563	0	ENST00000412585.2:c.778G>A	p.Ala260Thr	p.A260T	ENST00000412585	NM_005514.6	260	Gca/Aca																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32164720	32164720	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	43	549	0	ENST00000375023.3:c.5182G>T	p.Gly1728Trp	p.G1728W	ENST00000375023	NM_004557.3	1728	Ggg/Tgg																																																																															
RAC1	5879	MSKCC	GRCh37	7	6414381	6414382	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	38	306	0	ENST00000356142.4:c.20_21del	p.Val7GlyfsTer9	p.V7Gfs*9	ENST00000356142	NM_018890.3	5	aaGTgt/aagt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738289	145738289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	49	684	1	ENST00000428558.2:c.2696G>A	p.Gly899Asp	p.G899D	ENST00000428558	NM_004260.3	899	gGc/gAc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162210	38162210	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1388405525		P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	53	449	0	ENST00000317025.8:c.2506G>A	p.Gly836Arg	p.G836R	ENST00000317025	NM_023034.1	836	Gga/Aga																																																																															
ABL1	25	MSKCC	GRCh37	9	133759565	133759565	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374307625		P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	60	583	3	ENST00000318560.5:c.1888C>T	p.Arg630Cys	p.R630C	ENST00000318560	NM_005157.4	630	Cgc/Tgc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411529	63411530	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0076127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	39	290	0	ENST00000330258.3:c.1637dup	p.Leu546PhefsTer34	p.L546Ffs*34	ENST00000330258	NM_152424.3	546	ttg/ttTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883173	37883173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	321	368	0	ENST00000269571.5:c.3076C>T	p.Pro1026Ser	p.P1026S	ENST00000269571		1026	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0076129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	254	341	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0076129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	138	411	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395776	45395776	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			66	221	341	0	ENST00000262160.6:c.358C>T	p.Arg120Ter	p.R120*	ENST00000262160	NM_005901.5	120	Cga/Tga																																																																															
B2M	567	MSKCC	GRCh37	15	45003747	45003747	+	start_lost	Translation_Start_Site	SNP	G	G	A	rs1057519877		P-0076129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	701	350	0	ENST00000558401.1:c.3G>A	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	atG/atA																																																																															
APC	324	MSKCC	GRCh37	5	112175880	112175880	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	93	343	0	ENST00000257430.4:c.4592del	p.Asn1531MetfsTer34	p.N1531Mfs*34	ENST00000257430	NM_000038.5	1530	gAa/ga																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885616	111885616	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374482426		P-0076129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	476	394	0	ENST00000341259.2:c.1393G>A	p.Val465Ile	p.V465I	ENST00000341259	NM_005475.2	465	Gtc/Atc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524474	44524474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	83	296	0	ENST00000291552.4:c.83G>A	p.Arg28His	p.R28H	ENST00000291552	NM_006758.2	28	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0076129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			27	311	215	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989478	212989478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0076129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	265	283	0	ENST00000342788.4:c.233G>T	p.Arg78Leu	p.R78L	ENST00000342788	NM_005235.2	78	cGg/cTg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479837	67479847	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GCGGAGTACAG	GCGGAGTACAG	-			P-0076129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	111	377	0	ENST00000327367.4:c.1145_1154+1del		p.AEYR382fs	ENST00000327367	NM_005902.3	382	GCGGAGTACAGg/g																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21346512	21346512	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	322	429	0	ENST00000215739.8:c.1003G>C	p.Ala335Pro	p.A335P	ENST00000215739	NM_006767.3	335	Gct/Cct																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900302	101900302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	92	329	0	ENST00000374994.4:c.736G>T	p.Ala246Ser	p.A246S	ENST00000374994	NM_004612.2	246	Gca/Tca																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33689908	33689911	+	frameshift_variant	Frame_Shift_Del	DEL	CTCC	CTCC	-			P-0076129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	244	407	2	ENST00000308377.4:c.916_919del	p.Gly306SerfsTer8	p.G306Sfs*8	ENST00000308377	NM_152270.3	306	GGAGag/ag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831471	72831471	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	157	430	0	ENST00000268489.5:c.5110C>A	p.Pro1704Thr	p.P1704T	ENST00000268489	NM_006885.3	1704	Cct/Act																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011197	12011251	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAAGAAATTTTAGGCAAAATCACTTTAGCAGTAAGTACCTGGTCTTTAAATTATT	GAAGAAATTTTAGGCAAAATCACTTTAGCAGTAAGTACCTGGTCTTTAAATTATT	-			P-0076129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			19	50	185	0	ENST00000353533.5:c.604_633+25del		p.X202_splice	ENST00000353533	NM_003010.3	202																																																																																
TOP1	7150	MSKCC	GRCh37	20	39728882	39728882	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0076129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	161	309	0	ENST00000361337.2:c.1162A>G	p.Lys388Glu	p.K388E	ENST00000361337	NM_003286.2	388	Aaa/Gaa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0076133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	164	460	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0076133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	84	107	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																															
APC	324	MSKCC	GRCh37	5	112170822	112170822	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1114167575		P-0076133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	105	227	0	ENST00000257430.4:c.1918C>T	p.Arg640Trp	p.R640W	ENST00000257430	NM_000038.5	640	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245447	153245447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	158	295	0	ENST00000281708.4:c.1744T>C	p.Ser582Pro	p.S582P	ENST00000281708	NM_033632.3	582	Tcg/Ccg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519895		P-0076133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	132	201	0	ENST00000281708.4:c.1394G>T	p.Arg465Leu	p.R465L	ENST00000281708	NM_033632.3	465	cGt/cTt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117878	70117888	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCAGGCGGC	GCGCAGGCGGC	-			P-0076133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	152	564	0	ENST00000245479.2:c.353_363del	p.Ala118GlufsTer130	p.A118Efs*130	ENST00000245479	NM_000346.3	116	GCGCAGGCGGCg/g																																																																															
APC	324	MSKCC	GRCh37	5	112175753	112175760	+	frameshift_variant	Frame_Shift_Del	DEL	TTATTACA	TTATTACA	-			P-0076133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	174	419	0	ENST00000257430.4:c.4464_4471del	p.Leu1488PhefsTer23	p.L1488Ffs*23	ENST00000257430	NM_000038.5	1488	TTATTACAt/t																																																																															
ATRX	546	MSKCC	GRCh37	X	76952146	76952146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	28	133	0	ENST00000373344.5:c.289C>T	p.Pro97Ser	p.P97S	ENST00000373344	NM_000489.3	97	Cct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0076133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			94	148	253	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112174053	112174054	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0076133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	138	310	0	ENST00000257430.4:c.2763_2764del	p.Leu922Ter	p.L922*	ENST00000257430	NM_000038.5	921	gCA/g																																																																															
PMS2	5395	MSKCC	GRCh37	7	6042099	6042099	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	24	169	0	ENST00000265849.7:c.522A>T	p.Gln174His	p.Q174H	ENST00000265849	NM_000535.5	174	caA/caT																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158727	26158728	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCCGTGTCGGAGGGCACCAAG			P-0076133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	38	247	0	ENST00000289316.2:c.336_356dup	p.Ser113_Val119dup	p.S113_V119dup	ENST00000289316	NM_138720.2	113	-/GCCGTGTCGGAGGGCACCAAG																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385189	41385189	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	147	460	0	ENST00000373198.4:c.772G>T	p.Ala258Ser	p.A258S	ENST00000373198	NM_133170.3	258	Gcc/Tcc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10264988	10264988	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1359313210		P-0076133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	121	471	0	ENST00000340748.4:c.1952G>A	p.Arg651Gln	p.R651Q	ENST00000340748		651	cGg/cAg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56171031	56171031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	189	547	0	ENST00000399503.3:c.1859G>A	p.Ser620Asn	p.S620N	ENST00000399503	NM_005921.1	620	aGt/aAt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661541	227661541	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	221	639	0	ENST00000305123.5:c.1914del	p.Ser639AlafsTer25	p.S639Afs*25	ENST00000305123	NM_005544.2	638	aaG/aa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2185861	2185861	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0076133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	171	394	0	ENST00000398665.3:c.133T>G	p.Cys45Gly	p.C45G	ENST00000398665	NM_032482.2	45	Tgt/Ggt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0076134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	338	495	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101611	27101612	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0076134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	273	516	0	ENST00000324856.7:c.4899dup	p.Met1634HisfsTer14	p.M1634Hfs*14	ENST00000324856	NM_006015.4	1631	-/C																																																																															
EP300	2033	MSKCC	GRCh37	22	41523752	41523752	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0076134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	25	437	0	ENST00000263253.7:c.1168G>A	p.Val390Met	p.V390M	ENST00000263253	NM_001429.3	390	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0076134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	266	377	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
B2M	567	MSKCC	GRCh37	15	45007833	45007833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	128	437	0	ENST00000558401.1:c.280G>A	p.Glu94Lys	p.E94K	ENST00000558401	NM_004048.2	94	Gaa/Aaa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31451722	31451722	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	90	291	0	ENST00000344624.3:c.2600C>G	p.Thr867Ser	p.T867S	ENST00000344624		867	aCc/aGc																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045717	26045717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	149	468	1	ENST00000540144.1:c.79C>A	p.Arg27Ser	p.R27S	ENST00000540144	NM_003531.2	27	Cgt/Agt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554348	63554349	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0076134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	253	430	0	ENST00000307078.5:c.390dup	p.Ala131SerfsTer10	p.A131Sfs*10	ENST00000307078	NM_004655.3	130	-/A																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914297	32914297	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0076134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	264	326	0	ENST00000380152.3:c.5805T>G	p.Asn1935Lys	p.N1935K	ENST00000380152		1935	aaT/aaG																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026138	48026138	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587780669		P-0076134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			712	121	481	0	ENST00000234420.5:c.1016C>G	p.Ala339Gly	p.A339G	ENST00000234420	NM_000179.2	339	gCt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0076135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	312	390	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175060	112175060	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0076135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	92	243	0	ENST00000257430.4:c.3769G>T	p.Glu1257Ter	p.E1257*	ENST00000257430	NM_000038.5	1257	Gaa/Taa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3794909	3794909	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	40	229	0	ENST00000262367.5:c.3968A>G	p.Lys1323Arg	p.K1323R	ENST00000262367	NM_004380.2	1323	aAa/aGa																																																																															
APC	324	MSKCC	GRCh37	5	112175352	112175374	+	frameshift_variant	Frame_Shift_Del	DEL	TTTCTTCAGGAGCGAAATCTCCC	TTTCTTCAGGAGCGAAATCTCCC	-			P-0076135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	194	272	0	ENST00000257430.4:c.4062_4084del	p.Ser1355GlnfsTer12	p.S1355Qfs*12	ENST00000257430	NM_000038.5	1354	tTTTCTTCAGGAGCGAAATCTCCC/t																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663258	227663258	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	126	319	0	ENST00000305123.5:c.197T>G	p.Leu66Arg	p.L66R	ENST00000305123	NM_005544.2	66	cTt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0076138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	113	381	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741707	145741707	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs543009701		P-0076138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	159	484	0	ENST00000428558.2:c.796G>A	p.Glu266Lys	p.E266K	ENST00000428558	NM_004260.3	266	Gag/Aag																																																																															
SRC	6714	MSKCC	GRCh37	20	36012660	36012660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	120	353	0	ENST00000358208.4:c.104C>T	p.Ser35Leu	p.S35L	ENST00000358208		35	tCg/tTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540322	187540322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	64	247	0	ENST00000441802.2:c.7418G>A	p.Arg2473Lys	p.R2473K	ENST00000441802	NM_005245.3	2473	aGa/aAa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324917	31324917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	148	399	0	ENST00000412585.2:c.19del	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000412585	NM_005514.6	7	Cga/ga																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467916	50467916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1372604802		P-0076138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	73	407	0	ENST00000331340.3:c.1151C>T	p.Ser384Leu	p.S384L	ENST00000331340	NM_006060.4	384	tCg/tTg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016634	12016634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	84	195	0	ENST00000353533.5:c.770C>T	p.Ser257Phe	p.S257F	ENST00000353533	NM_003010.3	257	tCt/tTt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81892752	81892752	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	43	166	0	ENST00000359376.3:c.463C>T	p.Gln155Ter	p.Q155*	ENST00000359376	NM_002661.3	155	Caa/Taa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2966402	2966402	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	89	216	0	ENST00000396946.4:c.1778G>T	p.Ser593Ile	p.S593I	ENST00000396946	NM_032415.4	593	aGc/aTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29527590	29527590	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	25	152	0	ENST00000358273.4:c.1039C>T	p.Gln347Ter	p.Q347*	ENST00000358273	NM_001042492.2	347	Cag/Tag																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953172	17953172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	109	408	0	ENST00000458235.1:c.814C>T	p.Arg272Cys	p.R272C	ENST00000458235	NM_000215.3	272	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0076140-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	33	223	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107174	27107174	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0076152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	123	477	0	ENST00000324856.7:c.6785C>A	p.Ser2262Ter	p.S2262*	ENST00000324856	NM_006015.4	2262	tCg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	153	312	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89831306	89831306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	128	442	0	ENST00000389301.3:c.2770G>A	p.Asp924Asn	p.D924N	ENST00000389301	NM_000135.2	924	Gat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0076152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	43	231	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046343	180046343	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1489676984		P-0076152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	56	411	1	ENST00000261937.6:c.2671C>T	p.Arg891Cys	p.R891C	ENST00000261937	NM_182925.4	891	Cgc/Tgc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2047292	2047292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	22	104	0	ENST00000349721.2:c.854G>A	p.Gly285Asp	p.G285D	ENST00000349721	NM_003070.3	285	gGc/gAc																																																																															
MPL	4352	MSKCC	GRCh37	1	43814990	43814990	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1253984180		P-0076152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	84	512	0	ENST00000372470.3:c.1525G>A	p.Gly509Ser	p.G509S	ENST00000372470	NM_005373.2	509	Ggc/Agc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273110	18273110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	121	559	0	ENST00000222254.8:c.1000G>A	p.Asp334Asn	p.D334N	ENST00000222254	NM_005027.3	334	Gac/Aac																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265977	41266368	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCAC	TTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCAC	-			P-0076152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	83	224	1	ENST00000349496.5:c.14-37_242-74del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0076153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	282	486	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0076153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	13	393	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	147	450	0	ENST00000250448.2:c.655C>T	p.Arg219Cys	p.R219C	ENST00000250448	NM_004496.3	219	Cgc/Tgc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164838	36164838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1282562937		P-0076153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	36	491	0	ENST00000300305.3:c.1037G>A	p.Arg346His	p.R346H	ENST00000300305		346	cGc/cAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31025088	31025088	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139397200		P-0076153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	73	415	0	ENST00000375687.4:c.4573G>A	p.Asp1525Asn	p.D1525N	ENST00000375687	NM_015338.5	1525	Gat/Aat																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63976451	63976451	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs200228746		P-0076153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	174	408	0	ENST00000295900.6:c.1598A>G	p.Tyr533Cys	p.Y533C	ENST00000295900	NM_000333.3	533	tAt/tGt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417485	139417485	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750295442		P-0076153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	60	507	0	ENST00000277541.6:c.559G>A	p.Gly187Arg	p.G187R	ENST00000277541	NM_017617.3	187	Ggg/Agg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0076179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	41	419	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99160348	99160348	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	58	548	0	ENST00000074304.5:c.827A>G	p.Glu276Gly	p.E276G	ENST00000074304	NM_001134224.1	276	gAg/gGg																																																																															
EP300	2033	MSKCC	GRCh37	22	41574233	41574234	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0076179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	67	551	0	ENST00000263253.7:c.6520_6521del	p.Thr2174HisfsTer35	p.T2174Hfs*35	ENST00000263253	NM_001429.3	2173	aAC/a																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419921	152419922	+	missense_variant	Missense_Mutation	DNP	CT	CT	TG			P-0076179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	58	544	0	ENST00000206249.3:c.1608_1609delinsTG	p.Tyr537Asp	p.Y537D	ENST00000206249	NM_000125.3	536	ctCTat/ctTGat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431721	49431722	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0076181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	106	545	0	ENST00000301067.7:c.9417dup	p.Lys3140GlnfsTer36	p.K3140Qfs*36	ENST00000301067	NM_003482.3	3139	-/C																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061192	38061192	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	134	470	0	ENST00000250448.2:c.797T>G	p.Phe266Cys	p.F266C	ENST00000250448	NM_004496.3	266	tTc/tGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0076181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	18	190	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16245992	16245992	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	122	372	1	ENST00000375759.3:c.1615C>T	p.Arg539Ter	p.R539*	ENST00000375759	NM_015001.2	539	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108121728	108121728	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0076181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	82	489	0	ENST00000278616.4:c.1536T>G	p.Ile512Met	p.I512M	ENST00000278616	NM_000051.3	512	atT/atG																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125796	47125796	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	85	375	0	ENST00000409792.3:c.5474A>T	p.Gln1825Leu	p.Q1825L	ENST00000409792	NM_014159.6	1825	cAa/cTa																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986707	36986707	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	53	515	0	ENST00000354822.5:c.982C>T	p.Gln328Ter	p.Q328*	ENST00000354822	NM_001079668.2	328	Cag/Tag																																																																															
WT1	7490	MSKCC	GRCh37	11	32413565	32413565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	32	415	0	ENST00000332351.3:c.1385G>T	p.Arg462Leu	p.R462L	ENST00000332351	NM_024426.4	462	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0076183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	27	388	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965885	25965885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	41	543	0	ENST00000435504.4:c.3321G>T	p.Met1107Ile	p.M1107I	ENST00000435504		1107	atG/atT																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226131	2226131	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	34	579	0	ENST00000326181.6:c.1828A>G	p.Thr610Ala	p.T610A	ENST00000326181	NM_032271.2	610	Acg/Gcg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431639	49431639	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs377384903		P-0076183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	46	695	0	ENST00000301067.7:c.9500G>T	p.Arg3167Leu	p.R3167L	ENST00000301067	NM_003482.3	3167	cGg/cTg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204801	128204801	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	32	592	0	ENST00000341105.2:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000341105	NM_032638.4	214	Cag/Tag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466344	120466344	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	47	609	0	ENST00000256646.2:c.4775A>G	p.Tyr1592Cys	p.Y1592C	ENST00000256646	NM_024408.3	1592	tAt/tGt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31389222	31389222	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	29	510	0	ENST00000328111.2:c.2135G>T	p.Arg712Leu	p.R712L	ENST00000328111	NM_006892.3	712	cGg/cTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857744	9857744	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	44	690	0	ENST00000330684.3:c.3657del	p.Asn1220ThrfsTer11	p.N1220Tfs*11	ENST00000330684	NM_001134407.1	1219	tcC/tc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0076199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	227	412	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0076199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	332	416	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912580		P-0076199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	196	376	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112174835	112174835	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0076199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	218	449	0	ENST00000257430.4:c.3544A>T	p.Lys1182Ter	p.K1182*	ENST00000257430	NM_000038.5	1182	Aaa/Taa																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21348518	21348518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	39	540	0	ENST00000215739.8:c.1575G>A	p.Met525Ile	p.M525I	ENST00000215739	NM_006767.3	525	atG/atA																																																																															
BCL6	604	MSKCC	GRCh37	3	187451353	187451354	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0076199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	270	414	0	ENST00000232014.4:c.128_129del	p.Phe43Ter	p.F43*	ENST00000232014	NM_001130845.1	43	tTT/t																																																																															
ALK	238	MSKCC	GRCh37	2	29420544	29420553	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TGGGCATGGG	TGGGCATGGG	-			P-0076199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	174	473	0	ENST00000389048.3:c.3939-11_3939-2del		p.X1313_splice	ENST00000389048	NM_004304.4	1313																																																																																
LATS1	9113	MSKCC	GRCh37	6	150005217	150005217	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	282	453	0	ENST00000253339.5:c.1008C>A	p.Ser336Arg	p.S336R	ENST00000253339		336	agC/agA																																																																															
MST1R	4486	MSKCC	GRCh37	3	49935014	49935014	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	350	557	0	ENST00000296474.3:c.1985T>C	p.Met662Thr	p.M662T	ENST00000296474	NM_002447.2	662	aTg/aCg																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80343498	80343498	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	39	321	0	ENST00000286548.4:c.821A>T	p.Asn274Ile	p.N274I	ENST00000286548	NM_002072.3	274	aAc/aTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56167803	56167804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1402352674		P-0076201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	67	566	0	ENST00000399503.3:c.1369dup	p.Thr457AsnfsTer4	p.T457Nfs*4	ENST00000399503	NM_005921.1	456	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0076202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	29	283	0	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	40	210	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BIRC3	330	MSKCC	GRCh37	11	102201854	102201859	+	inframe_deletion	In_Frame_Del	DEL	AATCCT	AATCCT	-			P-0076202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	41	355	0	ENST00000263464.3:c.1207_1212del	p.Ile403_Leu404del	p.I403_L404del	ENST00000263464	NM_001165.4	402	aaAATCCTa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587780070		P-0076204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	30	573	0	ENST00000269305.4:c.535C>A	p.His179Asn	p.H179N	ENST00000269305	NM_001126112.2	179	Cat/Aat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0076206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	83	315	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965672	93965672	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	100	377	0	ENST00000369303.4:c.2256G>C	p.Met752Ile	p.M752I	ENST00000369303	NM_004440.3	752	atG/atC																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2182220	2182220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	21	308	0	ENST00000349721.2:c.4439C>T	p.Thr1480Met	p.T1480M	ENST00000349721	NM_003070.3	1480	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0076211-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	323	264	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922936	39922936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076211-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			60	174	206	0	ENST00000378444.4:c.3772G>A	p.Gly1258Ser	p.G1258S	ENST00000378444	NM_001123385.1	1258	Ggc/Agc																																																																															
TET2	54790	MSKCC	GRCh37	4	106155385	106155385	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1187881284		P-0076211-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	170	337	0	ENST00000380013.4:c.286C>T	p.Arg96Cys	p.R96C	ENST00000380013	NM_001127208.2	96	Cgc/Tgc																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346199	152346199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076211-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			702	73	331	0	ENST00000359321.1:c.371C>T	p.Thr124Ile	p.T124I	ENST00000359321	NM_005431.1	124	aCc/aTc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47059192	47059192	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AGTCA			P-0076211-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	84	327	0	ENST00000409792.3:c.7469delinsTGACT	p.Arg2490LeufsTer5	p.R2490Lfs*5	ENST00000409792	NM_014159.6	2490	cGg/cTGACTg																																																																															
SESN3	143686	MSKCC	GRCh37	11	94924638	94924638	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754657751		P-0076218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	53	271	0	ENST00000536441.1:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000536441	NM_144665.3	91	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	113	168	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0076218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	31	211	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0076218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	35	153	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59770849	59770849	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	60	226	0	ENST00000259008.2:c.2517G>A	p.Trp839Ter	p.W839*	ENST00000259008	NM_032043.2	839	tgG/tgA																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212483961	212483961	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076218-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	25	211	0	ENST00000342788.4:c.2242G>T	p.Val748Leu	p.V748L	ENST00000342788	NM_005235.2	748	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0076220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	65	349	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589631	67589632	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATTATATGAAGA			P-0076220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	11	230	0	ENST00000274335.5:c.1397_1408dup	p.Leu466_Glu469dup	p.L466_E469dup	ENST00000274335		466	aga/agATTATATGAAGAa																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88678939	88678939	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	11	184	0	ENST00000372037.3:c.880del	p.Ala294GlnfsTer14	p.A294Qfs*14	ENST00000372037	NM_004329.2	293	gcG/gc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62309659	62309659	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A			P-0076220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	42	285	0	ENST00000482936.1:c.997G>A	p.Glu333Lys	p.E333K	ENST00000482936		333	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175058	112175059	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGAAACAATAC			P-0076220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	27	239	0	ENST00000257430.4:c.3771_3781dup	p.Thr1261LysfsTer8	p.T1261Kfs*8	ENST00000257430	NM_000038.5	1256	caa/caAGAAACAATACa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209337	98209337	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	11	309	0	ENST00000331920.6:c.4201T>C	p.Tyr1401His	p.Y1401H	ENST00000331920	NM_000264.3	1401	Tac/Cac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061226	38061237	+	inframe_deletion	In_Frame_Del	DEL	CGAACATGTTGC	CGAACATGTTGC	-			P-0076240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	302	290	0	ENST00000250448.2:c.752_763del	p.Gly251_Phe254del	p.G251_F254del	ENST00000250448	NM_004496.3	251	gGCAACATGTTCGag/gag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619332	37619332	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	168	340	0	ENST00000447079.4:c.1009del	p.Leu337Ter	p.L337*	ENST00000447079	NM_015083.1	336	ttC/tt																																																																															
CDK8	1024	MSKCC	GRCh37	13	26959384	26959384	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	128	291	0	ENST00000381527.3:c.551T>C	p.Leu184Ser	p.L184S	ENST00000381527	NM_001260.1	184	tTg/tCg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37672050	37672051	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0076240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	141	256	0	ENST00000447079.4:c.2836_2837del	p.Glu946ThrfsTer8	p.E946Tfs*8	ENST00000447079	NM_015083.1	945	ctAGaa/ctaa																																																																															
TEK	7010	MSKCC	GRCh37	9	27192571	27192571	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs758481469		P-0076240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	130	368	0	ENST00000380036.4:c.1574G>T	p.Gly525Val	p.G525V	ENST00000380036	NM_000459.3	525	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0076241-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	109	361	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509296	106509296	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076241-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	30	341	0	ENST00000359195.3:c.1290C>A	p.Asn430Lys	p.N430K	ENST00000359195	NM_002649.2	430	aaC/aaA																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479810	67479810	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863223746		P-0076243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	58	334	0	ENST00000327367.4:c.1117C>T	p.Arg373Cys	p.R373C	ENST00000327367	NM_005902.3	373	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs864622237		P-0076243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	146	362	0	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120258	70120259	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0076243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	78	393	1	ENST00000245479.2:c.1261dup	p.Ser421LysfsTer157	p.S421Kfs*157	ENST00000245479	NM_000346.3	420	-/A																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	114	261	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593485	48593485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0076243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	70	345	0	ENST00000342988.3:c.1236C>A	p.Tyr412Ter	p.Y412*	ENST00000342988	NM_005359.5	412	taC/taA																																																																															
POT1	25913	MSKCC	GRCh37	7	124481222	124481223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0076243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	82	308	0	ENST00000357628.3:c.1173dup	p.Pro392SerfsTer3	p.P392Sfs*3	ENST00000357628	NM_015450.2	391	-/T																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652303	36652303	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761903210		P-0076243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	62	334	0	ENST00000244741.5:c.425G>A	p.Arg142Gln	p.R142Q	ENST00000244741	NM_000389.4	142	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247360	153247360	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	142	378	0	ENST00000281708.4:c.1442C>A	p.Ala481Asp	p.A481D	ENST00000281708	NM_033632.3	481	gCc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0076245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	153	356	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
HGF	3082	MSKCC	GRCh37	7	81392167	81392167	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	42	314	0	ENST00000222390.5:c.110A>G	p.Asn37Ser	p.N37S	ENST00000222390	NM_000601.4	37	aAt/aGt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157505531	157505531	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	175	295	0	ENST00000346085.5:c.3512A>G	p.Asp1171Gly	p.D1171G	ENST00000346085	NM_020732.3	1171	gAc/gGc																																																																															
APC	324	MSKCC	GRCh37	5	112174885	112174886	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0076245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	223	490	0	ENST00000257430.4:c.3595_3596del	p.Lys1199GlufsTer8	p.K1199Efs*8	ENST00000257430	NM_000038.5	1198	tcAAag/tcag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467723	66467723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	125	342	0	ENST00000273854.3:c.546C>A	p.Ser182Arg	p.S182R	ENST00000273854	NM_004439.5	182	agC/agA																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78933909	78933909	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1342049284		P-0076245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	85	337	0	ENST00000306801.3:c.3509C>T	p.Thr1170Met	p.T1170M	ENST00000306801	NM_020761.2	1170	aCg/aTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81392186	81392186	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0076245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	45	285	0	ENST00000222390.5:c.91G>T	p.Gly31Ter	p.G31*	ENST00000222390	NM_000601.4	31	Gga/Tga																																																																															
REST	5978	MSKCC	GRCh37	4	57797750	57797750	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	126	401	0	ENST00000309042.7:c.2726T>A	p.Leu909His	p.L909H	ENST00000309042	NM_005612.4	909	cTt/cAt																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488893	231488894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs567805129		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	45	399	0	ENST00000295050.7:c.1263dup	p.Ile422TyrfsTer11	p.I422Yfs*11	ENST00000295050	NM_032018.5	419	aat/aaTt																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51436084	51436084	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	76	371	0	ENST00000262662.1:c.49del	p.Asp17ThrfsTer2	p.D17Tfs*2	ENST00000262662		15	aGg/ag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692800	89692800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786204856		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	26	198	0	ENST00000371953.3:c.284C>T	p.Pro95Leu	p.P95L	ENST00000371953	NM_000314.4	95	cCa/cTa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	68	275	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	102	556	3	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	34	242	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																															
IGF1	3479	MSKCC	GRCh37	12	102869492	102869492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	53	406	0	ENST00000307046.8:c.149C>T	p.Pro50Leu	p.P50L	ENST00000307046	NM_001111285.1	50	cCg/cTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133234500	133234500	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs114315196		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	55	326	0	ENST00000320574.5:c.3332G>A	p.Arg1111Gln	p.R1111Q	ENST00000320574	NM_006231.2	1111	cGg/cAg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	51	402	3	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46215217	46215217	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	64	260	0	ENST00000334344.6:c.652T>C	p.Ser218Pro	p.S218P	ENST00000334344	NM_152641.2	218	Tcc/Ccc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	59	536	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527667	103527667	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377390651		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	43	289	0	ENST00000355739.4:c.2975G>A	p.Arg992Gln	p.R992Q	ENST00000355739	NM_000123.3	992	cGa/cAa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21553861	21553861	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	52	320	0	ENST00000382592.4:c.2741del	p.Leu914TrpfsTer10	p.L914Wfs*10	ENST00000382592	NM_014572.2	914	tTg/tg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562799	95562799	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	32	476	0	ENST00000343455.3:c.4458del	p.Lys1486AsnfsTer4	p.K1486Nfs*4	ENST00000343455	NM_177438.2	1486	aaA/aa																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	57	416	1	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
MGA	23269	MSKCC	GRCh37	15	42028504	42028504	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751169367		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	18	427	0	ENST00000219905.7:c.4042C>T	p.Arg1348Trp	p.R1348W	ENST00000219905	NM_001164273.1	1348	Cgg/Tgg																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	56	443	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727513	88727513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374069724		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	63	469	0	ENST00000360948.2:c.266G>A	p.Arg89His	p.R89H	ENST00000360948	NM_001012338.2	89	cGc/cAc																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2096133	2096133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1041413378		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	70	392	0	ENST00000219066.1:c.374del	p.Pro125GlnfsTer12	p.P125Qfs*12	ENST00000219066	NM_002528.5	125	cCa/ca																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134473	2134473	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1343536158		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	88	604	0	ENST00000219476.3:c.4250G>A	p.Arg1417Gln	p.R1417Q	ENST00000219476	NM_000548.3	1417	cGg/cAg																																																																															
NF1	4763	MSKCC	GRCh37	17	29576097	29576098	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	63	419	0	ENST00000358273.4:c.4076dup	p.Gln1360SerfsTer20	p.Q1360Sfs*20	ENST00000358273	NM_001042492.2	1357	ttc/ttCc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	180	617	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	72	610	0	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281250	15281250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1184522923		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	73	540	0	ENST00000263388.2:c.5006G>A	p.Arg1669His	p.R1669H	ENST00000263388	NM_000435.2	1669	cGc/cAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296358	15296358	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	73	582	1	ENST00000263388.2:c.2084del	p.Pro695ArgfsTer165	p.P695Rfs*165	ENST00000263388	NM_000435.2	695	cCg/cg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214866	36214866	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	55	400	5	ENST00000222270.7:c.3296del	p.Gly1099AlafsTer83	p.G1099Afs*83	ENST00000222270	NM_014727.1	1098	Ggg/gg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223175	36223175	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	73	645	0	ENST00000222270.7:c.5730del	p.Arg1911AspfsTer23	p.R1911Dfs*23	ENST00000222270	NM_014727.1	1909	Ccc/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224532	36224532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759167832		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	30	550	0	ENST00000222270.7:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000222270	NM_014727.1	2332	Cgt/Tgt																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	57	420	2	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	60	531	6	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
INSR	3643	MSKCC	GRCh37	19	7122735	7122735	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772334614		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	56	453	0	ENST00000302850.5:c.3419C>T	p.Ala1140Val	p.A1140V	ENST00000302850	NM_000208.2	1140	gCg/gTg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	114	449	2	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
CASP8	841	MSKCC	GRCh37	2	202149799	202149799	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	64	473	0	ENST00000358485.4:c.1245del	p.Phe415LeufsTer26	p.F415Lfs*26	ENST00000358485	NM_001080125.1	414	Ttt/tt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033372	48033372	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794746		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	58	412	0	ENST00000234420.5:c.3676G>A	p.Ala1226Thr	p.A1226T	ENST00000234420	NM_000179.2	1226	Gca/Aca																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513327	44513327	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755118626		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	67	360	0	ENST00000291552.4:c.608G>A	p.Arg203His	p.R203H	ENST00000291552	NM_006758.2	203	cGt/cAt																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664711	138664711	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs797044531		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	63	303	0	ENST00000330315.3:c.854del	p.Pro285ArgfsTer71	p.P285Rfs*71	ENST00000330315	NM_023067.3	285	cCg/cg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	69	419	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
BAP1	8314	MSKCC	GRCh37	3	52443613	52443613	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	46	528	0	ENST00000460680.1:c.79del	p.Val27CysfsTer45	p.V27Cfs*45	ENST00000460680	NM_004656.3	27	Gtg/tg																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	67	528	3	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081568	143081569	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	57	430	0	ENST00000262992.4:c.1505dup	p.Val503SerfsTer15	p.V503Sfs*15	ENST00000262992	NM_001101669.1	502	cca/ccCa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	64	508	5	ENST00000382895.3:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382895	NM_133330.2	1341	Ccc/cc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	61	427	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	71	352	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129388	152129388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	73	387	0	ENST00000206249.3:c.341C>T	p.Pro114Leu	p.P114L	ENST00000206249	NM_000125.3	114	cCg/cTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157488269	157488269	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1247824233		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	48	456	1	ENST00000346085.5:c.2975C>T	p.Thr992Met	p.T992M	ENST00000346085	NM_020732.3	992	aCg/aTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502256	157502256	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	80	474	0	ENST00000346085.5:c.3292del	p.Leu1098TrpfsTer32	p.L1098Wfs*32	ENST00000346085	NM_020732.3	1097	Ccc/cc																																																																															
SMO	6608	MSKCC	GRCh37	7	128845590	128845590	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772693769		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	69	384	0	ENST00000249373.3:c.887G>A	p.Arg296His	p.R296H	ENST00000249373	NM_005631.4	296	cGt/cAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	41	353	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345760	152345760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	60	341	1	ENST00000359321.1:c.810del	p.Phe270LeufsTer27	p.F270Lfs*27	ENST00000359321	NM_005431.1	270	ttT/tt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2954915	2954915	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752709289		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	67	487	0	ENST00000396946.4:c.2795G>A	p.Arg932Gln	p.R932Q	ENST00000396946	NM_032415.4	932	cGg/cAg																																																																															
MYC	4609	MSKCC	GRCh37	8	128750639	128750639	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775522201		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	71	480	0	ENST00000377970.2:c.176C>T	p.Ala59Val	p.A59V	ENST00000377970	NM_002467.4	59	gCg/gTg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738411	145738416	+	inframe_deletion	In_Frame_Del	DEL	GGTGCA	GGTGCA	-	rs548804317		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	46	553	0	ENST00000428558.2:c.2569_2574del	p.Cys857_Thr858del	p.C857_T858del	ENST00000428558	NM_004260.3	857	TGCACC/-																																																																															
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	55	399	1	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	16	274	2	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740099	162740099	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748144091		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	41	338	0	ENST00000367921.3:c.1301G>A	p.Arg434Gln	p.R434Q	ENST00000367921	NM_006182.2	434	cGg/cAg																																																																															
NADK	65220	MSKCC	GRCh37	1	1686813	1686813	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	72	334	0	ENST00000341426.5:c.688G>T	p.Gly230Trp	p.G230W	ENST00000341426	NM_023018.4	230	Ggg/Tgg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9786999	9786999	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	70	430	0	ENST00000377346.4:c.3030G>T	p.Glu1010Asp	p.E1010D	ENST00000377346	NM_005026.3	1010	gaG/gaT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343017	118343017	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	77	472	0	ENST00000534358.1:c.1143G>T	p.Lys381Asn	p.K381N	ENST00000534358	NM_005933.3	381	aaG/aaT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444420	49444420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	73	540	0	ENST00000301067.7:c.2951C>A	p.Pro984His	p.P984H	ENST00000301067	NM_003482.3	984	cCt/cAt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135298	30135298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	40	340	0	ENST00000331968.5:c.520G>A	p.Gly174Ser	p.G174S	ENST00000331968	NM_002742.2	174	Ggt/Agt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562515	95562515	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	53	540	0	ENST00000343455.3:c.4742T>G	p.Leu1581Arg	p.L1581R	ENST00000343455	NM_177438.2	1581	cTt/cGt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99454642	99454642	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	61	394	0	ENST00000268035.6:c.1561A>G	p.Ile521Val	p.I521V	ENST00000268035	NM_000875.3	521	Atc/Gtc																																																																															
CBFB	865	MSKCC	GRCh37	16	67100681	67100681	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	71	378	0	ENST00000412916.2:c.379T>C	p.Phe127Leu	p.F127L	ENST00000412916		127	Ttt/Ctt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827781	72827781	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1316513948		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	69	404	0	ENST00000268489.5:c.8800G>A	p.Ala2934Thr	p.A2934T	ENST00000268489	NM_006885.3	2934	Gca/Aca																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81972451	81972451	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	66	387	2	ENST00000359376.3:c.3244T>C	p.Cys1082Arg	p.C1082R	ENST00000359376	NM_002661.3	1082	Tgt/Cgt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349533	89349533	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	60	485	0	ENST00000301030.4:c.3417G>T	p.Glu1139Asp	p.E1139D	ENST00000301030	NM_001256183.1	1139	gaG/gaT																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9984890	9984890	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	50	388	0	ENST00000330684.3:c.1075C>A	p.Pro359Thr	p.P359T	ENST00000330684	NM_001134407.1	359	Ccc/Acc																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732410	74732410	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	65	438	0	ENST00000359995.5:c.499C>T	p.Arg167Ter	p.R167*	ENST00000359995	NM_001195427.1	167	Cga/Tga																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256723	19256723	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	38	418	0	ENST00000162023.5:c.990del	p.Gly331AlafsTer?	p.G331Afs*?	ENST00000162023		330	ccC/cc																																																																															
GNA11	2767	MSKCC	GRCh37	19	3115072	3115072	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	70	417	0	ENST00000078429.4:c.605+2T>C		p.X202_splice	ENST00000078429	NM_002067.2	202																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36214888	36214888	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377179255		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	61	396	0	ENST00000222270.7:c.3314G>A	p.Arg1105His	p.R1105H	ENST00000222270	NM_014727.1	1105	cGt/cAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231549	5231549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	42	359	1	ENST00000357368.4:c.1927C>T	p.Pro643Ser	p.P643S	ENST00000357368	NM_002850.3	643	Ccg/Tcg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101083	41101083	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	67	480	0	ENST00000373198.4:c.1273C>A	p.Gln425Lys	p.Q425K	ENST00000373198	NM_133170.3	425	Cag/Aag																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21340150	21340150	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	18	357	0	ENST00000215739.8:c.284T>G	p.Leu95Arg	p.L95R	ENST00000215739	NM_006767.3	95	cTc/cGc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138461593	138461593	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	27	334	0	ENST00000289153.2:c.428C>A	p.Pro143His	p.P143H	ENST00000289153	NM_006219.2	143	cCt/cAt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067387	37067387	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	74	448	0	ENST00000231790.2:c.1298A>G	p.Glu433Gly	p.E433G	ENST00000231790	NM_000249.3	433	gAa/gGa																																																																															
MST1R	4486	MSKCC	GRCh37	3	49929013	49929013	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1297754736		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	24	541	0	ENST00000296474.3:c.3353G>A	p.Arg1118His	p.R1118H	ENST00000296474	NM_002447.2	1118	cGc/cAc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143003235	143003235	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	45	282	0	ENST00000262992.4:c.2591A>C	p.Glu864Ala	p.E864A	ENST00000262992	NM_001101669.1	864	gAg/gCg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1976589	1976589	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	62	427	0	ENST00000382895.3:c.3373-1G>T		p.X1125_splice	ENST00000382895	NM_133330.2	1125																																																																																
APC	324	MSKCC	GRCh37	5	112177830	112177830	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs762955111		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	58	447	0	ENST00000257430.4:c.6539A>G	p.Lys2180Arg	p.K2180R	ENST00000257430	NM_000038.5	2180	aAg/aGg																																																																															
APC	324	MSKCC	GRCh37	5	112179474	112179474	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	46	503	0	ENST00000257430.4:c.8183T>C	p.Val2728Ala	p.V2728A	ENST00000257430	NM_000038.5	2728	gTg/gCg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31410921	31410921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	53	422	0	ENST00000344624.3:c.3599C>T	p.Ala1200Val	p.A1200V	ENST00000344624		1200	gCc/gTc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946278	2946278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	46	400	0	ENST00000396946.4:c.3459G>T	p.Gln1153His	p.Q1153H	ENST00000396946	NM_032415.4	1153	caG/caT																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405168	139405168	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	30	508	0	ENST00000277541.6:c.2677T>C	p.Cys893Arg	p.C893R	ENST00000277541	NM_017617.3	893	Tgc/Cgc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2060970	2060970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758647013		P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	82	516	2	ENST00000349721.2:c.1676G>A	p.Arg559Lys	p.R559K	ENST00000349721	NM_003070.3	559	aGg/aAg																																																																															
BTK	695	MSKCC	GRCh37	X	100625068	100625068	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	33	362	0	ENST00000308731.7:c.310-1G>T		p.X104_splice	ENST00000308731	NM_000061.2	104																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53231076	53231076	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	82	434	0	ENST00000375401.3:c.1826A>G	p.Tyr609Cys	p.Y609C	ENST00000375401	NM_004187.3	609	tAc/tGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0076284-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	124	539	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7590637	7590713	+	splice_donor_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	CACGGAGCCGAGAGCCCGTGACTCAGAGAGGACTCATCAAGTTCAGTCAGGAGCTTACCCAATCCAGGGAAGCGTGT	CACGGAGCCGAGAGCCCGTGACTCAGAGAGGACTCATCAAGTTCAGTCAGGAGCTTACCCAATCCAGGGAAGCGTGT	-			P-0076284-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	75	539	0	ENST00000269305.4:c.-47_-29+58del		p.X16_splice	ENST00000269305	NM_001126112.2	16																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0076285-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	10	230	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519922		P-0076285-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	23	554	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0076285-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	24	623	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445020	89445020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076285-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	39	598	0	ENST00000336596.2:c.1340G>T	p.Arg447Leu	p.R447L	ENST00000336596	NM_005233.5	447	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0076285-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	11	372	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78897382	78897382	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs765937595		P-0076285-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			749	41	797	0	ENST00000306801.3:c.2717C>G	p.Pro906Arg	p.P906R	ENST00000306801	NM_020761.2	906	cCg/cGg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458204	120458205	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0076285-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			743	43	779	0	ENST00000256646.2:c.7140_7141delinsTT	p.Gly2381Cys	p.G2381C	ENST00000256646	NM_024408.3	2380	gtGGgc/gtTTgc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913510	39913510	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0076285-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	28	520	0	ENST00000378444.4:c.4818T>A	p.Cys1606Ter	p.C1606*	ENST00000378444	NM_001123385.1	1606	tgT/tgA																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690757	33690757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076285-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	35	538	0	ENST00000308377.4:c.70G>T	p.Val24Leu	p.V24L	ENST00000308377	NM_152270.3	24	Gtg/Ttg																																																																															
AKT2	208	MSKCC	GRCh37	19	40762839	40762839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076285-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	34	615	0	ENST00000392038.2:c.169G>T	p.Val57Leu	p.V57L	ENST00000392038	NM_001626.4	57	Gta/Tta																																																																															
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0076286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	357	726	1	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																															
MGA	23269	MSKCC	GRCh37	15	42005513	42005517	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAA	GAAAA	-			P-0076286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			48	338	327	0	ENST00000219905.7:c.3255_3259del	p.Arg1085SerfsTer5	p.R1085Sfs*5	ENST00000219905	NM_001164273.1	1083	ttGAAAAga/ttga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120512320	120512320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	382	472	0	ENST00000256646.2:c.922G>A	p.Ala308Thr	p.A308T	ENST00000256646	NM_024408.3	308	Gcc/Acc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220371	1220371	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0076305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	41	370	0	ENST00000326873.7:c.465-1G>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
TET2	54790	MSKCC	GRCh37	4	106180899	106180899	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0076305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	34	356	0	ENST00000380013.4:c.3927T>G	p.Phe1309Leu	p.F1309L	ENST00000380013	NM_001127208.2	1309	ttT/ttG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0076305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	25	286	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27059183	27059183	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0076305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	42	277	0	ENST00000324856.7:c.1820C>G	p.Ser607Ter	p.S607*	ENST00000324856	NM_006015.4	607	tCa/tGa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251937	153251937	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	31	400	0	ENST00000281708.4:c.1069A>G	p.Arg357Gly	p.R357G	ENST00000281708	NM_033632.3	357	Aga/Gga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351014	89351014	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	49	392	0	ENST00000301030.4:c.1936T>A	p.Cys646Ser	p.C646S	ENST00000301030	NM_001256183.1	646	Tgt/Agt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244466	41244466	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	23	411	0	ENST00000357654.3:c.3082C>G	p.Arg1028Gly	p.R1028G	ENST00000357654	NM_007294.3	1028	Cgt/Ggt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577507	7577507	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0076311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	233	349	0	ENST00000269305.4:c.774A>C	p.Glu258Asp	p.E258D	ENST00000269305	NM_001126112.2	258	gaA/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0076315-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	213	319	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0076315-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	159	433	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027014	71027014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076315-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	128	404	0	ENST00000318789.4:c.1313G>A	p.Arg438Gln	p.R438Q	ENST00000318789	NM_032682.5	438	cGg/cAg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098804	178098804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	69	307	0	ENST00000397062.3:c.241G>A	p.Gly81Ser	p.G81S	ENST00000397062	NM_006164.4	81	Ggt/Agt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575152	48575152	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	31	254	0	ENST00000342988.3:c.346C>T	p.Gln116Ter	p.Q116*	ENST00000342988	NM_005359.5	116	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1222982	1222982	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T	rs727504172		P-0076319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	55	329	0	ENST00000326873.7:c.921-2A>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48593456	48593456	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	35	315	0	ENST00000342988.3:c.1207A>T	p.Ser403Cys	p.S403C	ENST00000342988	NM_005359.5	403	Agt/Tgt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528641	89528641	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	40	224	0	ENST00000336596.2:c.2941G>T	p.Val981Phe	p.V981F	ENST00000336596	NM_005233.5	981	Gtt/Ttt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47058714	47058714	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0076319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	41	328	0	ENST00000409792.3:c.7564A>T	p.Lys2522Ter	p.K2522*	ENST00000409792	NM_014159.6	2522	Aag/Tag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288435	15288435	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1030425669		P-0076319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	43	259	0	ENST00000263388.2:c.4304G>T	p.Arg1435Leu	p.R1435L	ENST00000263388	NM_000435.2	1435	cGc/cTc																																																																															
CBL	867	MSKCC	GRCh37	11	119148892	119148892	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs387906666		P-0076319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	50	287	0	ENST00000264033.4:c.1112A>G	p.Tyr371Cys	p.Y371C	ENST00000264033	NM_005188.3	371	tAc/tGc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513185	106513185	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	45	306	0	ENST00000359195.3:c.2089T>A	p.Trp697Arg	p.W697R	ENST00000359195	NM_002649.2	697	Tgg/Agg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	missense_variant	Missense_Mutation	DNP	CG	CG	AT			P-0076319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	64	386	0	ENST00000346208.3:c.1220_1221delinsAT	p.Ser407Tyr	p.S407Y	ENST00000346208		407	tCG/tAT																																																																															
BTK	695	MSKCC	GRCh37	X	100608189	100608189	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	38	332	0	ENST00000308731.7:c.1901G>T	p.Trp634Leu	p.W634L	ENST00000308731	NM_000061.2	634	tGg/tTg																																																																															
ALK	238	MSKCC	GRCh37	2	29519818	29519818	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	61	369	0	ENST00000389048.3:c.1753G>C	p.Ala585Pro	p.A585P	ENST00000389048	NM_004304.4	585	Gcc/Ccc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609825	81609825	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	59	412	0	ENST00000298171.2:c.1423C>A	p.Leu475Ile	p.L475I	ENST00000298171	NM_000369.2	475	Ctc/Atc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68942754	68942754	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	51	300	0	ENST00000288368.4:c.566G>T	p.Arg189Leu	p.R189L	ENST00000288368	NM_024870.2	189	cGg/cTg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143043354	143043354	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	47	195	0	ENST00000262992.4:c.2062G>T	p.Asp688Tyr	p.D688Y	ENST00000262992	NM_001101669.1	688	Gat/Tat																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256640	19256640	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	34	257	0	ENST00000162023.5:c.1073G>T	p.Arg358Leu	p.R358L	ENST00000162023		358	cGc/cTc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546656	9546656	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	64	364	0	ENST00000353224.5:c.1366G>T	p.Gly456Trp	p.G456W	ENST00000353224	NM_177990.2	456	Ggg/Tgg																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51529116	51529116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	46	316	0	ENST00000260433.2:c.236G>T	p.Arg79Leu	p.R79L	ENST00000260433		79	cGg/cTg																																																																															
CBL	867	MSKCC	GRCh37	11	119169082	119169082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	55	331	0	ENST00000264033.4:c.2266G>A	p.Ala756Thr	p.A756T	ENST00000264033	NM_005188.3	756	Gcc/Acc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678398	88678398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	50	384	0	ENST00000360948.2:c.1138G>T	p.Ala380Ser	p.A380S	ENST00000360948	NM_001012338.2	380	Gcc/Tcc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748394	162748394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	65	393	0	ENST00000367921.3:c.2308G>A	p.Val770Met	p.V770M	ENST00000367921	NM_006182.2	770	Gtg/Atg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211764	2211764	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	50	333	0	ENST00000398665.3:c.1480C>T	p.Gln494Ter	p.Q494*	ENST00000398665	NM_032482.2	494	Cag/Tag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435671	18435671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	49	357	0	ENST00000266497.5:c.656G>A	p.Ser219Asn	p.S219N	ENST00000266497		219	aGt/aAt																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675506	40675507	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0076320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	16	229	0	ENST00000249776.8:c.287_288delinsTT	p.Ser96Ile	p.S96I	ENST00000249776	NM_033286.3	96	aGC/aTT																																																																															
TP53	7157	MSKCC	GRCh37	17	7574027	7574027	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882028		P-0076324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	10	282	0	ENST00000269305.4:c.1000G>T	p.Gly334Trp	p.G334W	ENST00000269305	NM_001126112.2	334	Ggg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100292	27100292	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0076336-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	54	518	0	ENST00000324856.7:c.4005-1G>T		p.X1335_splice	ENST00000324856	NM_006015.4	1335																																																																																
KLF5	688	MSKCC	GRCh37	13	73636639	73636639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076336-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			772	173	561	0	ENST00000377687.4:c.902C>T	p.Pro301Leu	p.P301L	ENST00000377687	NM_001730.3	301	cCc/cTc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060686	38060686	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780579934		P-0076336-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	47	580	0	ENST00000250448.2:c.1303G>A	p.Ala435Thr	p.A435T	ENST00000250448	NM_004496.3	435	Gcc/Acc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061333	38061333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076336-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	13	427	0	ENST00000250448.2:c.656G>A	p.Arg219His	p.R219H	ENST00000250448	NM_004496.3	219	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0076336-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	74	431	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21347168	21347168	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs935736801		P-0076336-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	63	443	0	ENST00000215739.8:c.1235G>A	p.Arg412His	p.R412H	ENST00000215739	NM_006767.3	412	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112136979	112136980	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATCTCAG			P-0076336-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	73	300	0	ENST00000257430.4:c.734_741dup	p.Asn248HisfsTer48	p.N248Hfs*48	ENST00000257430	NM_000038.5	245	tca/tCATCTCAGca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0076339-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	104	228	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551912	150551912	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770152297		P-0076339-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	113	401	0	ENST00000369026.2:c.95G>A	p.Gly32Glu	p.G32E	ENST00000369026	NM_021960.4	32	gGa/gAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581157	48581157	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0076339-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	149	344	0	ENST00000342988.3:c.461C>G	p.Ser154Ter	p.S154*	ENST00000342988	NM_005359.5	154	tCa/tGa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437782	52437782	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0076339-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	94	488	0	ENST00000460680.1:c.1379C>G	p.Ser460Ter	p.S460*	ENST00000460680	NM_004656.3	460	tCa/tGa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098450	47098450	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0076339-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	115	478	0	ENST00000409792.3:c.6824C>G	p.Ser2275Ter	p.S2275*	ENST00000409792	NM_014159.6	2275	tCa/tGa																																																																															
CASP8	841	MSKCC	GRCh37	2	202149751	202149751	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076339-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	139	584	0	ENST00000358485.4:c.1192C>T	p.Gln398Ter	p.Q398*	ENST00000358485	NM_001080125.1	398	Cag/Tag																																																																															
KLF5	688	MSKCC	GRCh37	13	73649902	73649902	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076339-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	99	434	0	ENST00000377687.4:c.1252G>C	p.Asp418His	p.D418H	ENST00000377687	NM_001730.3	418	Gat/Cat																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434643	110434643	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076339-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	95	472	0	ENST00000375856.3:c.3758A>G	p.Tyr1253Cys	p.Y1253C	ENST00000375856	NM_003749.2	1253	tAc/tGc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202723	128202723	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076339-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	120	549	0	ENST00000341105.2:c.997A>T	p.Ile333Phe	p.I333F	ENST00000341105	NM_032638.4	333	Atc/Ttc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650298	48650298	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076339-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	37	556	0	ENST00000376670.3:c.268G>T	p.Gly90Cys	p.G90C	ENST00000376670	NM_002049.3	90	Ggc/Tgc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797859	32797859	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0076339-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	103	402	0	ENST00000374899.4:c.1643C>A	p.Ser548Ter	p.S548*	ENST00000374899	NM_018833.2	548	tCa/tAa																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56772438	56772438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076339-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	108	419	0	ENST00000337432.4:c.292G>T	p.Gly98Cys	p.G98C	ENST00000337432	NM_058216.2	98	Ggc/Tgc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38277196	38277196	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs777103792		P-0076339-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1099	123	474	0	ENST00000425967.3:c.1232A>G	p.Tyr411Cys	p.Y411C	ENST00000425967	NM_001174067.1	411	tAt/tGt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647860	3647860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076339-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	111	491	0	ENST00000294008.3:c.1304G>T	p.Gly435Val	p.G435V	ENST00000294008	NM_032444.2	435	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578416	7578417	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0076339-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	109	533	0	ENST00000269305.4:c.513_514delinsTT	p.Glu171_Val172delinsAspPhe	p.E171_V172delinsDF	ENST00000269305	NM_001126112.2	171	gaGGtt/gaTTtt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914374	32914374	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs80358820		P-0076339-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	108	431	0	ENST00000380152.3:c.5882G>T	p.Ser1961Ile	p.S1961I	ENST00000380152		1961	aGt/aTt																																																																															
BBC3	27113	MSKCC	GRCh37	19	47729868	47729868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076339-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	91	428	0	ENST00000449228.1:c.521C>T	p.Pro174Leu	p.P174L	ENST00000449228	NM_001127240.2	174	cCa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0076341-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	137	485	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0076341-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	127	400	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41514476	41514476	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs766924754		P-0076341-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	100	346	0	ENST00000373198.4:c.185A>G	p.Lys62Arg	p.K62R	ENST00000373198	NM_133170.3	62	aAa/aGa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993455	72993455	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076341-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	68	410	0	ENST00000268489.5:c.590C>G	p.Thr197Ser	p.T197S	ENST00000268489	NM_006885.3	197	aCt/aGt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602848	10602848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076342-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	223	516	0	ENST00000171111.5:c.730G>A	p.Glu244Lys	p.E244K	ENST00000171111	NM_203500.1	244	Gag/Aag																																																																															
MET	4233	MSKCC	GRCh37	7	116411886	116411896	+	splice_region_variant,intron_variant	Splice_Region	DEL	TTTCTCTCTGT	TTTCTCTCTGT	-			P-0076342-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	756	536	0	ENST00000397752.3:c.2888-14_2888-4del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
KNSTRN	90417	MSKCC	GRCh37	15	40679389	40679389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076342-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	183	340	0	ENST00000249776.8:c.467G>A	p.Arg156Lys	p.R156K	ENST00000249776	NM_033286.3	156	aGa/aAa																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348837	11348851	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGGGGCCCCCA	GCAGCGGGGCCCCCA	-			P-0076342-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	135	326	0	ENST00000332029.2:c.485_499del	p.Leu162_Leu166del	p.L162_L166del	ENST00000332029	NM_003745.1	162	cTGGGGGCCCCGCTGCgc/cgc																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594736	47594736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1292459357		P-0076349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	98	562	0	ENST00000395288.2:c.1303G>A	p.Val435Met	p.V435M	ENST00000395288	NM_016506.5	435	Gtg/Atg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060777	38060779	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0076349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	190	636	1	ENST00000250448.2:c.1210_1212del	p.Asn404del	p.N404del	ENST00000250448	NM_004496.3	404	AAC/-																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59770795	59770795	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1427254734		P-0076349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	115	357	0	ENST00000259008.2:c.2571A>G	p.Ile857Met	p.I857M	ENST00000259008	NM_032043.2	857	atA/atG																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61306437	61306437	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	37	346	0	ENST00000341074.5:c.750A>T	p.Glu250Asp	p.E250D	ENST00000341074	NM_002974.2	250	gaA/gaT																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739000	145739000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1359	141	624	0	ENST00000428558.2:c.2155C>T	p.Leu719Phe	p.L719F	ENST00000428558	NM_004260.3	719	Ctc/Ttc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37649077	37649092	+	frameshift_variant	Frame_Shift_Del	DEL	GACATTATTGGGATTA	GACATTATTGGGATTA	-			P-0076351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	187	358	1	ENST00000447079.4:c.2182_2197del	p.Asp728LeufsTer20	p.D728Lfs*20	ENST00000447079	NM_015083.1	728	GACATTATTGGGATTAtt/tt																																																																															
ALK	238	MSKCC	GRCh37	2	30143009	30143009	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	44	544	0	ENST00000389048.3:c.517C>A	p.Leu173Met	p.L173M	ENST00000389048	NM_004304.4	173	Ctg/Atg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0076354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	121	294	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
ARAF	369	MSKCC	GRCh37	X	47426127	47426127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	158	486	0	ENST00000377045.4:c.647C>G	p.Pro216Arg	p.P216R	ENST00000377045	NM_001654.4	216	cCc/cGc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245393	153245393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	113	299	0	ENST00000281708.4:c.1798G>T	p.Asp600Tyr	p.D600Y	ENST00000281708	NM_033632.3	600	Gat/Tat																																																																															
STK11	6794	MSKCC	GRCh37	19	1219345	1219346	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-	rs587782424		P-0076354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	112	429	0	ENST00000326873.7:c.402_403del	p.Cys134TrpfsTer28	p.C134Wfs*28	ENST00000326873	NM_000455.4	133	GTg/g																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289932	15289932	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0076354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	177	573	0	ENST00000263388.2:c.3622G>T	p.Glu1208Ter	p.E1208*	ENST00000263388	NM_000435.2	1208	Gag/Tag																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40369219	40369219	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	126	357	0	ENST00000293328.3:c.1339C>T	p.Gln447Ter	p.Q447*	ENST00000293328	NM_012448.3	447	Cag/Tag																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47425426	47425427	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0076354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	188	420	0	ENST00000404338.3:c.3498dup	p.Arg1167AlafsTer4	p.R1167Afs*4	ENST00000404338	NM_004491.4	1165	ctg/ctGg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41215390	41215390	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0076354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	79	218	0	ENST00000357654.3:c.5153G>T	p.Trp1718Leu	p.W1718L	ENST00000357654	NM_007294.3	1718	tGg/tTg																																																																															
LYN	4067	MSKCC	GRCh37	8	56879365	56879365	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	177	367	0	ENST00000519728.1:c.882G>C	p.Met294Ile	p.M294I	ENST00000519728	NM_002350.3	294	atG/atC																																																																															
FH	2271	MSKCC	GRCh37	1	241680610	241680610	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs863223980		P-0076354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	196	254	0	ENST00000366560.3:c.139C>T	p.Gln47Ter	p.Q47*	ENST00000366560	NM_000143.3	47	Caa/Taa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222451	2222451	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	121	390	0	ENST00000398665.3:c.3283G>C	p.Gly1095Arg	p.G1095R	ENST00000398665	NM_032482.2	1095	Ggg/Cgg																																																																															
BTK	695	MSKCC	GRCh37	X	100611204	100611204	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	105	316	0	ENST00000308731.7:c.1402C>A	p.Arg468Ser	p.R468S	ENST00000308731	NM_000061.2	468	Cgc/Agc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37872169	37872169	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	160	423	0	ENST00000269571.5:c.1490C>G	p.Ala497Gly	p.A497G	ENST00000269571		497	gCc/gGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	24	383	0	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101628	27101628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	205	599	0	ENST00000324856.7:c.4910G>A	p.Arg1637Gln	p.R1637Q	ENST00000324856	NM_006015.4	1637	cGg/cAg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	142	465	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	32	492	0	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948802	71948802	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200602515		P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	22	570	0	ENST00000298229.2:c.3514C>T	p.Arg1172Cys	p.R1172C	ENST00000298229	NM_001567.3	1172	Cgc/Tgc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416796	416796	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756725945		P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	185	555	0	ENST00000399788.2:c.3754C>T	p.Arg1252Cys	p.R1252C	ENST00000399788	NM_001042603.1	1252	Cgt/Tgt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121791	2121792	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	84	393	0	ENST00000219476.3:c.1959_1960del	p.Gly654LeufsTer2	p.G654Lfs*2	ENST00000219476	NM_000548.3	651	ccAGag/ccag																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	119	470	2	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																															
STAT3	6774	MSKCC	GRCh37	17	40485766	40485766	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1281630344		P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	26	464	0	ENST00000264657.5:c.974G>A	p.Arg325Gln	p.R325Q	ENST00000264657	NM_139276.2	325	cGg/cAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	156	581	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs758630849		P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	143	456	0	ENST00000305921.3:c.1349del	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533676	63533676	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367697282		P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	26	503	0	ENST00000307078.5:c.1478C>T	p.Ser493Leu	p.S493L	ENST00000307078	NM_004655.3	493	tCg/tTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602518	10602518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	129	522	0	ENST00000171111.5:c.1060C>T	p.Arg354Trp	p.R354W	ENST00000171111	NM_203500.1	354	Cgg/Tgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602601	10602601	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751665354		P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	131	502	0	ENST00000171111.5:c.977G>A	p.Arg326His	p.R326H	ENST00000171111	NM_203500.1	326	cGc/cAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098500	11098500	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371214327		P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	141	516	0	ENST00000344626.4:c.1018G>A	p.Ala340Thr	p.A340T	ENST00000344626	NM_003072.3	340	Gcg/Acg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288819	15288819	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1392500489		P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	96	352	0	ENST00000263388.2:c.3920C>T	p.Thr1307Met	p.T1307M	ENST00000263388	NM_000435.2	1307	aCg/aTg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271771	18271771	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770445875		P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	143	496	0	ENST00000222254.8:c.458C>T	p.Pro153Leu	p.P153L	ENST00000222254	NM_005027.3	153	cCg/cTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2213905	2213905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750798710		P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	151	552	0	ENST00000398665.3:c.1717G>A	p.Ala573Thr	p.A573T	ENST00000398665	NM_032482.2	573	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222938	36222938	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	135	584	0	ENST00000222270.7:c.5572del	p.Arg1858ValfsTer37	p.R1858Vfs*37	ENST00000222270	NM_014727.1	1856	gCc/gc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	109	415	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5207979	5207979	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs115470613		P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	19	539	0	ENST00000357368.4:c.5732C>T	p.Thr1911Met	p.T1911M	ENST00000357368	NM_002850.3	1911	aCg/aTg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715979	52715979	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786205227		P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	152	479	0	ENST00000322088.6:c.544C>T	p.Arg182Trp	p.R182W	ENST00000322088	NM_014225.5	182	Cgg/Tgg																																																																															
ACVR1	90	MSKCC	GRCh37	2	158630600	158630600	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	116	386	0	ENST00000263640.3:c.643G>A	p.Gly215Arg	p.G215R	ENST00000263640	NM_001105.4	215	Ggg/Agg																																																																															
ALK	238	MSKCC	GRCh37	2	29451783	29451784	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1323863892		P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			107	24	193	0	ENST00000389048.3:c.2781dup	p.Cys928ValfsTer20	p.C928Vfs*20	ENST00000389048	NM_004304.4	927	-/G																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022766	31022766	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs6058693		P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	152	524	1	ENST00000375687.4:c.2251G>A	p.Val751Ile	p.V751I	ENST00000375687	NM_015338.5	751	Gtt/Att																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29444383	29444383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	125	436	2	ENST00000544604.2:c.919C>T	p.Arg307Trp	p.R307W	ENST00000544604	NM_001206998.1	307	Cgg/Tgg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967350	134967350	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs61736108		P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	19	474	0	ENST00000398015.3:c.2689G>A	p.Val897Met	p.V897M	ENST00000398015	NM_004441.4	897	Gtg/Atg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	88	442	1	ENST00000303115.3:c.361del	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38947467	38947467	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	152	415	0	ENST00000357387.3:c.4213C>T	p.Arg1405Ter	p.R1405*	ENST00000357387	NM_152756.3	1405	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591076	67591076	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	120	422	0	ENST00000274335.5:c.1669C>T	p.Arg557Ter	p.R557*	ENST00000274335		557	Cga/Tga																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553645	106553645	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752218761		P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	168	466	0	ENST00000369096.4:c.1610C>T	p.Ala537Val	p.A537V	ENST00000369096	NM_001198.3	537	gCg/gTg																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519505	137519506	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs780346130		P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	164	520	10	ENST00000367739.4:c.1132_1133del	p.Ser378PhefsTer6	p.S378Ffs*6	ENST00000367739	NM_000416.2	378	AGt/t																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	152	367	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874149	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	114	385	2	ENST00000262189.6:c.8389_8390del	p.Lys2797GlyfsTer11	p.K2797Gfs*11	ENST00000262189	NM_170606.2	2797	AAg/g																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139815622	139815622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	126	459	0	ENST00000247668.2:c.1093C>T	p.Arg365Cys	p.R365C	ENST00000247668	NM_021138.3	365	Cgc/Tgc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	127	514	0	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411530	63411530	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			54	106	284	0	ENST00000330258.3:c.1637del	p.Leu546CysfsTer16	p.L546Cfs*16	ENST00000330258	NM_152424.3	546	tTg/tg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100695	8100695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	81	470	0	ENST00000346208.3:c.669del	p.Tyr225ThrfsTer40	p.Y225Tfs*40	ENST00000346208		223	ccG/cc																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205311	61205311	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	114	401	0	ENST00000301761.2:c.251T>C	p.Ile84Thr	p.I84T	ENST00000301761	NM_017841.2	84	aTt/aCt																																																																															
GAB2	9846	MSKCC	GRCh37	11	78128736	78128736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	117	457	0	ENST00000361507.4:c.31G>A	p.Gly11Ser	p.G11S	ENST00000361507	NM_080491.2	11	Ggc/Agc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524594	103524594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	149	393	0	ENST00000355739.4:c.2725C>A	p.Pro909Thr	p.P909T	ENST00000355739	NM_000123.3	909	Cct/Act																																																																															
CDK8	1024	MSKCC	GRCh37	13	26975416	26975416	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750047100		P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	104	468	0	ENST00000381527.3:c.1042G>A	p.Gly348Ser	p.G348S	ENST00000381527	NM_001260.1	348	Ggt/Agt																																																																															
MGA	23269	MSKCC	GRCh37	15	42058471	42058471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	122	516	0	ENST00000219905.7:c.8191G>A	p.Val2731Ile	p.V2731I	ENST00000219905	NM_001164273.1	2731	Gtt/Att																																																																															
STAT3	6774	MSKCC	GRCh37	17	40491420	40491420	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	133	410	0	ENST00000264657.5:c.380del	p.Gly127AlafsTer11	p.G127Afs*11	ENST00000264657	NM_139276.2	127	gGc/gc																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6270671	6270671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	26	569	0	ENST00000252674.7:c.112G>A	p.Gly38Ser	p.G38S	ENST00000252674	NM_005934.3	38	Ggc/Agc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21349228	21349228	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373488966		P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	114	558	0	ENST00000215739.8:c.1855C>T	p.Arg619Cys	p.R619C	ENST00000215739	NM_006767.3	619	Cgc/Tgc																																																																															
TP63	8626	MSKCC	GRCh37	3	189586481	189586481	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	148	468	0	ENST00000264731.3:c.1105A>G	p.Lys369Glu	p.K369E	ENST00000264731	NM_003722.4	369	Aag/Gag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636938	176636938	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	172	529	2	ENST00000439151.2:c.1538A>G	p.Lys513Arg	p.K513R	ENST00000439151	NM_022455.4	513	aAg/aGg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157454183	157454184	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	127	494	0	ENST00000346085.5:c.2396dup	p.Asn799LysfsTer32	p.N799Kfs*32	ENST00000346085	NM_020732.3	798	aga/agAa																																																																															
ABL1	25	MSKCC	GRCh37	9	133730464	133730464	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	24	365	0	ENST00000318560.5:c.530A>G	p.Asn177Ser	p.N177S	ENST00000318560	NM_005157.4	177	aAc/aGc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8338966	8338966	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	109	441	0	ENST00000356435.5:c.5335A>G	p.Met1779Val	p.M1779V	ENST00000356435		1779	Atg/Gtg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0077457-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	190	267	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0077457-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			68	123	176	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ATM	472	MSKCC	GRCh37	11	108164134	108164134	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077457-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			249	193	275	0	ENST00000278616.4:c.4707del	p.Val1570PhefsTer31	p.V1570Ffs*31	ENST00000278616	NM_000051.3	1569	gTt/gt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458347	120458347	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768047492		P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			846	87	616	1	ENST00000256646.2:c.6998C>T	p.Ala2333Val	p.A2333V	ENST00000256646	NM_024408.3	2333	gCg/gTg																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246091255	246091255	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs549272016		P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			592	46	326	0	ENST00000388985.4:c.680G>A	p.Arg227Gln	p.R227Q	ENST00000388985		227	cGa/cAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			489	93	426	0	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073929	8073929	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			653	152	452	0	ENST00000377482.5:c.730C>T	p.Arg244Ter	p.R244*	ENST00000377482	NM_018948.3	244	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			522	128	358	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307393	118307394	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			274	46	248	0	ENST00000534358.1:c.173dup	p.Ala59GlyfsTer88	p.A59Gfs*88	ENST00000534358	NM_005933.3	56	tcc/tCcc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			451	28	365	0	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			335	74	268	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913559	32913559	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1376347173		P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			502	98	377	0	ENST00000380152.3:c.5073del	p.Lys1691AsnfsTer15	p.K1691Nfs*15	ENST00000380152		1689	gcA/gc																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			731	85	441	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99460005	99460005	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201631492		P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			580	193	404	0	ENST00000268035.6:c.2101G>A	p.Ala701Thr	p.A701T	ENST00000268035	NM_000875.3	701	Gcc/Acc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16042373	16042373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	81	294	0	ENST00000268712.3:c.1301G>A	p.Arg434Lys	p.R434K	ENST00000268712	NM_006311.3	434	aGg/aAg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10247835	10247835	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780170131		P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			761	78	514	0	ENST00000340748.4:c.4367G>A	p.Arg1456Gln	p.R1456Q	ENST00000340748		1456	cGg/cAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130337	11130337	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs281875226		P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			569	126	368	0	ENST00000358026.2:c.2576C>T	p.Thr859Met	p.T859M	ENST00000358026	NM_001128849.1	859	aCg/aTg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18968241	18968241	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1277776216		P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			522	49	392	0	ENST00000262803.5:c.2081G>A	p.Arg694Gln	p.R694Q	ENST00000262803	NM_002911.3	694	cGg/cAg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19258595	19258595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377026490		P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			661	153	478	0	ENST00000162023.5:c.305C>T	p.Pro102Leu	p.P102L	ENST00000162023		102	cCg/cTg																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			598	114	440	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
ALK	238	MSKCC	GRCh37	2	29416658	29416658	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1374838786		P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			604	114	466	0	ENST00000389048.3:c.4295G>A	p.Arg1432Gln	p.R1432Q	ENST00000389048	NM_004304.4	1432	cGg/cAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			839	119	499	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			684	178	467	0	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37050349	37050349	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			539	92	354	0	ENST00000231790.2:c.503del	p.Asn168IlefsTer34	p.N168Ifs*34	ENST00000231790	NM_000249.3	166	ttA/tt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			790	58	454	1	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			425	95	318	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			642	134	408	7	ENST00000261937.6:c.89del	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522740	67522741	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			739	56	415	1	ENST00000274335.5:c.244dup	p.Ile82AsnfsTer24	p.I82Nfs*24	ENST00000274335		79	-/A																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			523	116	369	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970916	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			528	116	369	5	ENST00000265081.6:c.1148dup	p.Asn385GlnfsTer19	p.N385Qfs*19	ENST00000265081	NM_002439.4	381	aaa/aAaa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528718	157528718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			625	126	490	1	ENST00000346085.5:c.6443C>T	p.Ala2148Val	p.A2148V	ENST00000346085	NM_020732.3	2148	gCc/gTc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798105	32798105	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			756	60	518	0	ENST00000374899.4:c.1574del	p.Gly525AspfsTer36	p.G525Dfs*36	ENST00000374899	NM_018833.2	525	gGa/ga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			724	186	468	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
HGF	3082	MSKCC	GRCh37	7	81392144	81392145	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			421	60	378	0	ENST00000222390.5:c.132dup	p.Ser45IlefsTer28	p.S45Ifs*28	ENST00000222390	NM_000601.4	44	-/A																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342620	87342620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			669	56	434	0	ENST00000277120.3:c.905G>A	p.Cys302Tyr	p.C302Y	ENST00000277120		302	tGc/tAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76939806	76939806	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			270	59	203	0	ENST00000373344.5:c.942A>C	p.Arg314Ser	p.R314S	ENST00000373344	NM_000489.3	314	agA/agC																																																																															
PARP1	142	MSKCC	GRCh37	1	226555994	226555994	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			618	133	454	0	ENST00000366794.5:c.2183A>C	p.Gln728Pro	p.Q728P	ENST00000366794	NM_001618.3	728	cAg/cCg																																																																															
ATM	472	MSKCC	GRCh37	11	108160411	108160411	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			447	114	302	0	ENST00000278616.4:c.4319A>T	p.Lys1440Ile	p.K1440I	ENST00000278616	NM_000051.3	1440	aAa/aTa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94197308	94197308	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			428	65	329	0	ENST00000323929.3:c.1196T>C	p.Phe399Ser	p.F399S	ENST00000323929	NM_005591.3	399	tTc/tCc																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025578	1025578	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			618	147	474	0	ENST00000358495.3:c.797A>G	p.Gln266Arg	p.Q266R	ENST00000358495	NM_134424.2	266	cAg/cGg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	422265	422265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			578	143	365	0	ENST00000399788.2:c.2993T>C	p.Leu998Ser	p.L998S	ENST00000399788	NM_001042603.1	998	tTa/tCa																																																																															
CCND2	894	MSKCC	GRCh37	12	4398090	4398090	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			632	51	361	0	ENST00000261254.3:c.654G>T	p.Glu218Asp	p.E218D	ENST00000261254	NM_001759.3	218	gaG/gaT																																																																															
MGA	23269	MSKCC	GRCh37	15	42058930	42058930	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			613	177	472	0	ENST00000219905.7:c.8650T>G	p.Leu2884Val	p.L2884V	ENST00000219905	NM_001164273.1	2884	Ttg/Gtg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357086	89357086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			737	134	567	2	ENST00000301030.4:c.548G>A	p.Arg183His	p.R183H	ENST00000301030	NM_001256183.1	183	cGc/cAc																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690691	33690691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			713	131	502	0	ENST00000308377.4:c.136G>A	p.Val46Ile	p.V46I	ENST00000308377	NM_152270.3	46	Gtt/Att																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244289	41244289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			486	88	429	0	ENST00000357654.3:c.3259G>T	p.Gly1087Trp	p.G1087W	ENST00000357654	NM_007294.3	1087	Ggg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097009	11097009	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748340475		P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			626	52	450	0	ENST00000344626.4:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000344626	NM_003072.3	167	cGg/cAg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15308347	15308347	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754104109		P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			610	129	451	0	ENST00000263388.2:c.161G>A	p.Arg54His	p.R54H	ENST00000263388	NM_000435.2	54	cGt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227694	36227694	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			745	163	531	0	ENST00000222270.7:c.7263G>T	p.Glu2421Asp	p.E2421D	ENST00000222270	NM_014727.1	2421	gaG/gaT																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086113	16086113	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			706	47	458	0	ENST00000281043.3:c.1289T>C	p.Val430Ala	p.V430A	ENST00000281043	NM_005378.4	430	gTc/gCc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99169282	99169283	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			678	138	459	0	ENST00000074304.5:c.1216dup	p.Gln406ProfsTer40	p.Q406Pfs*40	ENST00000074304	NM_001134224.1	404	-/C																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827967	40827967	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			655	63	447	0	ENST00000373198.4:c.2461G>T	p.Ala821Ser	p.A821S	ENST00000373198	NM_133170.3	821	Gcc/Tcc																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22153366	22153366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			749	50	406	0	ENST00000215832.6:c.544G>T	p.Gly182Trp	p.G182W	ENST00000215832	NM_002745.4	182	Ggg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178937470	178937471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			239	47	222	0	ENST00000263967.3:c.1863dup	p.Tyr622IlefsTer5	p.Y622Ifs*5	ENST00000263967	NM_006218.2	620	gaa/gAaa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52595804	52595804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			767	71	419	0	ENST00000394830.3:c.4111G>A	p.Ala1371Thr	p.A1371T	ENST00000394830	NM_018313.4	1371	Gcc/Acc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149447890	149447890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			442	40	294	0	ENST00000286301.3:c.1514C>T	p.Ala505Val	p.A505V	ENST00000286301	NM_005211.3	505	gCc/gTc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30668385	30668385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			568	131	397	0	ENST00000376406.3:c.6127C>A	p.Pro2043Thr	p.P2043T	ENST00000376406	NM_014641.2	2043	Cct/Act																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803470	32803470	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			730	65	422	0	ENST00000374899.4:c.689del	p.Phe230SerfsTer20	p.F230Sfs*20	ENST00000374899	NM_018833.2	230	tTc/tc																																																																															
NBN	4683	MSKCC	GRCh37	8	90994994	90994994	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs200287925		P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	66	339	0	ENST00000265433.3:c.127C>T	p.Arg43Ter	p.R43*	ENST00000265433	NM_002485.4	43	Cga/Tga																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44913081	44913081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			209	18	162	0	ENST00000377967.4:c.756G>A	p.Met252Ile	p.M252I	ENST00000377967	NM_021140.2	252	atG/atA																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0078246-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	8	257	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876659802		P-0078246-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			488	35	315	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078246-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			507	38	338	0	ENST00000269305.4:c.848G>T	p.Arg283Leu	p.R283L	ENST00000269305	NM_001126112.2	283	cGc/cTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610139	10610139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078246-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			511	36	319	0	ENST00000171111.5:c.571G>A	p.Ala191Thr	p.A191T	ENST00000171111	NM_203500.1	191	Gct/Act																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679765	88679765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078246-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	23	283	0	ENST00000360948.2:c.698G>T	p.Gly233Val	p.G233V	ENST00000360948	NM_001012338.2	233	gGc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0078246-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			243	27	168	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460516	149460516	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0078365-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			110	42	318	0	ENST00000286301.3:c.121C>T	p.Arg41Ter	p.R41*	ENST00000286301	NM_005211.3	41	Cga/Tga																																																																															
ALK	238	MSKCC	GRCh37	2	29917797	29917797	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748854412		P-0078365-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			150	74	302	0	ENST00000389048.3:c.871C>T	p.Arg291Cys	p.R291C	ENST00000389048	NM_004304.4	291	Cgc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108141874	108141874	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587781558		P-0078365-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			86	51	259	0	ENST00000278616.4:c.2921+1G>A		p.X974_splice	ENST00000278616	NM_000051.3	974																																																																																
IDH1	3417	MSKCC	GRCh37	2	209113373	209113373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078365-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			260	90	268	0	ENST00000345146.2:c.134G>T	p.Gly45Val	p.G45V	ENST00000345146	NM_005896.2	45	gGc/gTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023819	27023819	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078413-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			152	70	422	0	ENST00000324856.7:c.925C>T	p.Gln309Ter	p.Q309*	ENST00000324856	NM_006015.4	309	Cag/Tag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434787	110434787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078413-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			195	27	378	0	ENST00000375856.3:c.3614G>A	p.Arg1205Gln	p.R1205Q	ENST00000375856	NM_003749.2	1205	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578257	7578258	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0078413-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			154	72	472	1	ENST00000269305.4:c.591_592delinsTT	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	197	gtGGaa/gtTTaa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458570	120458570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078413-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			234	30	408	0	ENST00000256646.2:c.6775G>T	p.Val2259Leu	p.V2259L	ENST00000256646	NM_024408.3	2259	Gtg/Ttg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150919378	150919378	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078413-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			223	27	391	0	ENST00000271640.5:c.1157A>T	p.Glu386Val	p.E386V	ENST00000271640	NM_001145415.1	386	gAg/gTg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150919387	150919387	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0078413-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			230	30	396	0	ENST00000271640.5:c.1166A>C	p.Tyr389Ser	p.Y389S	ENST00000271640	NM_001145415.1	389	tAt/tCt																																																																															
NUF2	83540	MSKCC	GRCh37	1	163309199	163309199	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078413-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			174	25	317	0	ENST00000271452.3:c.538T>G	p.Phe180Val	p.F180V	ENST00000271452	NM_145697.2	180	Ttc/Gtc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625331	69625331	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078413-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			223	33	440	0	ENST00000334134.2:c.462C>A	p.Tyr154Ter	p.Y154*	ENST00000334134	NM_005247.2	154	taC/taA																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432152	121432152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078413-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			206	40	415	0	ENST00000257555.6:c.899C>T	p.Pro300Leu	p.P300L	ENST00000257555		300	cCc/cTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446749	49446749	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078413-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			228	53	435	0	ENST00000301067.7:c.1061del	p.Gly354GlufsTer48	p.G354Efs*48	ENST00000301067	NM_003482.3	354	gGa/ga																																																																															
MGA	23269	MSKCC	GRCh37	15	42042091	42042091	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078413-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			213	64	389	0	ENST00000219905.7:c.6286A>G	p.Lys2096Glu	p.K2096E	ENST00000219905	NM_001164273.1	2096	Aag/Gag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210875	36210875	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763344349		P-0078413-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	34	486	0	ENST00000222270.7:c.626G>A	p.Arg209Gln	p.R209Q	ENST00000222270	NM_014727.1	209	cGg/cAg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867566	35867566	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0078413-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			242	40	258	0	ENST00000303115.3:c.379+1G>T		p.X127_splice	ENST00000303115	NM_002185.3	127																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120471613	120471613	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201968231		P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	146	347	0	ENST00000256646.2:c.3878G>A	p.Arg1293His	p.R1293H	ENST00000256646	NM_024408.3	1293	cGt/cAt																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551952	150551952	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			803	165	379	1	ENST00000369026.2:c.55del	p.Ala19ProfsTer30	p.A19Pfs*30	ENST00000369026	NM_021960.4	19	Gcc/cc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740131	162740131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			708	132	375	0	ENST00000367921.3:c.1333C>A	p.Leu445Ile	p.L445I	ENST00000367921	NM_006182.2	445	Ctt/Att																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745624	162745624	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765562219		P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			688	185	406	0	ENST00000367921.3:c.2039G>A	p.Arg680His	p.R680H	ENST00000367921	NM_006182.2	680	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			494	157	313	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797890	45797890	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146044717		P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			746	220	463	0	ENST00000372115.3:c.839G>A	p.Arg280His	p.R280H	ENST00000372115	NM_001048171.1	280	cGc/cAc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073803	8073804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			717	180	418	0	ENST00000377482.5:c.855dup	p.Arg286GlnfsTer7	p.R286Qfs*7	ENST00000377482	NM_018948.3	285	-/C																																																																															
ATM	472	MSKCC	GRCh37	11	108098419	108098419	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587779858		P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			289	426	331	0	ENST00000278616.4:c.68G>A	p.Arg23Gln	p.R23Q	ENST00000278616	NM_000051.3	23	cGa/cAa																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944965	31944965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			582	235	343	0	ENST00000340398.3:c.136G>A	p.Val46Met	p.V46M	ENST00000340398	NM_001013699.2	46	Gtg/Atg																																																																															
MGA	23269	MSKCC	GRCh37	15	42046766	42046766	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			563	163	326	0	ENST00000219905.7:c.7139+1G>A		p.X2380_splice	ENST00000219905	NM_001164273.1	2380																																																																																
MGA	23269	MSKCC	GRCh37	15	42050033	42050033	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs548371365		P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	78	262	0	ENST00000219905.7:c.7187G>A	p.Arg2396Gln	p.R2396Q	ENST00000219905	NM_001164273.1	2396	cGa/cAa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641346	23641346	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759024828		P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			625	173	430	0	ENST00000261584.4:c.2129C>T	p.Thr710Met	p.T710M	ENST00000261584	NM_024675.3	710	aCg/aTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29562641	29562641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854562		P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			468	124	290	0	ENST00000358273.4:c.3721C>T	p.Arg1241Ter	p.R1241*	ENST00000358273	NM_001042492.2	1241	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29665752	29665755	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	102	285	0	ENST00000358273.4:c.6852_6855del	p.Tyr2285ThrfsTer5	p.Y2285Tfs*5	ENST00000358273	NM_001042492.2	2284	ACTTac/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579547	7579547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			772	177	423	0	ENST00000269305.4:c.140del	p.Pro47ArgfsTer76	p.P47Rfs*76	ENST00000269305	NM_001126112.2	47	cCg/cg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291170	10291170	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369196079		P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			940	257	548	0	ENST00000340748.4:c.301C>T	p.Arg101Trp	p.R101W	ENST00000340748		101	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097625	11097625	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			686	186	341	1	ENST00000344626.4:c.810del	p.Met272CysfsTer31	p.M272Cfs*31	ENST00000344626	NM_003072.3	269	Ccc/cc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376248	15376248	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			575	126	340	2	ENST00000263377.2:c.766del	p.Gln256SerfsTer27	p.Q256Sfs*27	ENST00000263377	NM_058243.2	256	Cag/ag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			814	179	521	0	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218383	36218383	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			690	182	429	0	ENST00000222270.7:c.4162T>C	p.Tyr1388His	p.Y1388H	ENST00000222270	NM_014727.1	1388	Tac/Cac																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503884	47503884	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			741	154	403	1	ENST00000404338.3:c.4444del	p.Gln1482SerfsTer317	p.Q1482Sfs*317	ENST00000404338	NM_004491.4	1480	aCc/ac																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222900	5222900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747443047		P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			547	182	371	0	ENST00000357368.4:c.2903C>T	p.Ala968Val	p.A968V	ENST00000357368	NM_002850.3	968	gCc/gTc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			638	179	418	7	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			727	162	475	3	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
SRC	6714	MSKCC	GRCh37	20	36024652	36024652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			642	160	373	0	ENST00000358208.4:c.641G>A	p.Gly214Asp	p.G214D	ENST00000358208		214	gGc/gAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			605	167	433	3	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																															
TERT	7015	MSKCC	GRCh37	5	1294665	1294665	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			623	158	388	0	ENST00000310581.5:c.336del	p.Glu113ArgfsTer15	p.E113Rfs*15	ENST00000310581	NM_198253.2	112	ccC/cc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38953630	38953630	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	72	284	0	ENST00000357387.3:c.2723A>G	p.Asn908Ser	p.N908S	ENST00000357387	NM_152756.3	908	aAt/aGt																																																																															
PARK2	5071	MSKCC	GRCh37	6	161781122	161781122	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			521	132	298	0	ENST00000366898.1:c.1283del	p.Asn428MetfsTer7	p.N428Mfs*7	ENST00000366898	NM_004562.2	428	aAt/at																																																																															
STK19	8859	MSKCC	GRCh37	6	31939888	31939888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			439	373	386	0	ENST00000375331.2:c.115G>A	p.Ala39Thr	p.A39T	ENST00000375331	NM_004197.1	39	Gcc/Acc																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790908	89790910	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs746966684		P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			599	140	384	0	ENST00000336032.3:c.301_303del	p.Lys101del	p.K101del	ENST00000336032	NM_006813.2	99	AAG/-																																																																															
AGO2	27161	MSKCC	GRCh37	8	141595382	141595382	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			751	394	470	0	ENST00000220592.5:c.51del	p.Ile18SerfsTer121	p.I18Sfs*121	ENST00000220592	NM_012154.3	17	ccC/cc																																																																															
ABL1	25	MSKCC	GRCh37	9	133730335	133730335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			596	174	386	0	ENST00000318560.5:c.401G>A	p.Arg134His	p.R134H	ENST00000318560	NM_005157.4	134	cGc/cAc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814728	139814728	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1345839275		P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			652	189	389	0	ENST00000247668.2:c.721C>T	p.Arg241Trp	p.R241W	ENST00000247668	NM_021138.3	241	Cgg/Tgg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193117055	193117055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			641	151	271	0	ENST00000367435.3:c.788G>A	p.Arg263His	p.R263H	ENST00000367435	NM_024529.4	263	cGt/cAt																																																																															
IL10	3586	MSKCC	GRCh37	1	206942025	206942025	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			684	155	278	0	ENST00000423557.1:c.493A>G	p.Ile165Val	p.I165V	ENST00000423557	NM_000572.2	165	Atc/Gtc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577222	64577224	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs794728657		P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			568	613	443	0	ENST00000337652.1:c.358_360del	p.Lys120del	p.K120del	ENST00000337652	NM_130803.2	120	AAG/-																																																																															
POLE	5426	MSKCC	GRCh37	12	133209346	133209346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			591	222	411	0	ENST00000320574.5:c.6040G>A	p.Gly2014Arg	p.G2014R	ENST00000320574	NM_006231.2	2014	Ggg/Agg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28931721	28931721	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761815840		P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			595	111	372	0	ENST00000282397.4:c.2218G>A	p.Val740Met	p.V740M	ENST00000282397	NM_002019.4	740	Gtg/Atg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95572534	95572534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			502	119	317	0	ENST00000343455.3:c.2831G>A	p.Arg944Gln	p.R944Q	ENST00000343455	NM_177438.2	944	cGa/cAa																																																																															
USP8	9101	MSKCC	GRCh37	15	50757280	50757280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	61	282	0	ENST00000307179.4:c.578C>T	p.Thr193Met	p.T193M	ENST00000307179		193	aCg/aTg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50784048	50784048	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs940350665		P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			570	163	372	0	ENST00000398568.2:c.439C>T	p.Arg147Cys	p.R147C	ENST00000398568	NM_001042412.1	147	Cgc/Tgc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349567	89349568	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			690	200	414	0	ENST00000301030.4:c.3382_3383del	p.Asp1128GlnfsTer41	p.D1128Qfs*41	ENST00000301030	NM_001256183.1	1128	GAc/c																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211794	2211795	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			693	53	344	0	ENST00000398665.3:c.1516dup	p.Gln506ProfsTer48	p.Q506Pfs*48	ENST00000398665	NM_032482.2	504	acc/aCcc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46574044	46574044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			576	189	435	0	ENST00000263734.3:c.59G>A	p.Arg20Gln	p.R20Q	ENST00000263734	NM_001430.4	20	cGg/cAg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637413	47637413	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63750037		P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			420	333	373	0	ENST00000233146.2:c.547C>T	p.Gln183Ter	p.Q183*	ENST00000233146	NM_000251.2	183	Cag/Tag																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288317	21288317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			716	245	413	0	ENST00000354336.3:c.562G>A	p.Gly188Arg	p.G188R	ENST00000354336	NM_005207.3	188	Gga/Aga																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21348499	21348499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			477	409	520	0	ENST00000215739.8:c.1556G>A	p.Arg519Gln	p.R519Q	ENST00000215739	NM_006767.3	519	cGg/cAg																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72866485	72866485	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			524	147	346	0	ENST00000325599.8:c.778T>A	p.Ser260Thr	p.S260T	ENST00000325599	NM_018130.2	260	Tct/Act																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803709	1803709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1047	193	427	0	ENST00000260795.2:c.887G>A	p.Ser296Asn	p.S296N	ENST00000260795		296	aGc/aAc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750536	41750536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			839	150	354	0	ENST00000226382.2:c.92C>T	p.Ala31Val	p.A31V	ENST00000226382	NM_003924.3	31	gCt/gTt																																																																															
KDR	3791	MSKCC	GRCh37	4	55948799	55948799	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	121	244	0	ENST00000263923.4:c.3666G>C	p.Gln1222His	p.Q1222H	ENST00000263923	NM_002253.2	1222	caG/caC																																																																															
NPM1	4869	MSKCC	GRCh37	5	170834766	170834766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			509	45	289	0	ENST00000296930.5:c.834G>A	p.Met278Ile	p.M278I	ENST00000296930	NM_002520.6	278	atG/atA																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100209	157100210	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			437	115	310	0	ENST00000346085.5:c.1151dup	p.Gly385ArgfsTer150	p.G385Rfs*150	ENST00000346085	NM_020732.3	382	-/G																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858221	27858221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			693	216	412	0	ENST00000359303.2:c.350G>A	p.Arg117His	p.R117H	ENST00000359303	NM_003535.2	117	cGt/cAt																																																																															
MET	4233	MSKCC	GRCh37	7	116411874	116411889	+	intron_variant	Intron	DEL	ACAAGCTCTTTCTTTC	ACAAGCTCTTTCTTTC	TT			P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			438	390	476	1	ENST00000397752.3:c.2888-29_2888-14delinsTT		p.*963*	ENST00000397752	NM_000245.2																																																																																	
AGO2	27161	MSKCC	GRCh37	8	141554311	141554311	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1306853493		P-0078719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			550	377	347	0	ENST00000220592.5:c.1839+1G>A		p.X613_splice	ENST00000220592	NM_012154.3	613																																																																																
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934573		P-0078723-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			484	12	250	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0078723-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			427	25	221	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519968		P-0078798-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	161	385	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0078800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	189	341	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927977	178927982	+	inframe_deletion	In_Frame_Del	DEL	CACTGT	CACTGT	-			P-0078800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	13	298	0	ENST00000263967.3:c.1256_1261del	p.His419_Cys420del	p.H419_C420del	ENST00000263967	NM_006218.2	419	CACTGT/-																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659740	227659740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	55	388	0	ENST00000305123.5:c.3715G>A	p.Glu1239Lys	p.E1239K	ENST00000305123	NM_005544.2	1239	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112174733	112174734	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	310	507	0	ENST00000257430.4:c.3442_3443insA	p.Ser1148TyrfsTer2	p.S1148Yfs*2	ENST00000257430	NM_000038.5	1148	tct/tAct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0078827-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	12	241	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86670661	86670661	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078827-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	21	294	0	ENST00000274376.6:c.1939C>G	p.Leu647Val	p.L647V	ENST00000274376	NM_002890.2	647	Ctt/Gtt																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61322935	61322935	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078827-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	26	236	0	ENST00000283752.5:c.1129A>G	p.Lys377Glu	p.K377E	ENST00000283752	NM_006919.2	377	Aag/Gag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25994406	25994406	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078827-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	27	347	0	ENST00000435504.4:c.407C>A	p.Ser136Ter	p.S136*	ENST00000435504		136	tCg/tAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098548	11098548	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078827-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	32	550	0	ENST00000344626.4:c.1066C>T	p.Gln356Ter	p.Q356*	ENST00000344626	NM_003072.3	356	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0078829-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			73	10	326	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
MET	4233	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0078846-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	158	267	0	ENST00000397752.3:c.3028+3A>G		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
KDR	3791	MSKCC	GRCh37	4	55953903	55953903	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0078846-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	101	180	0	ENST00000263923.4:c.3533T>G	p.Leu1178Arg	p.L1178R	ENST00000263923	NM_002253.2	1178	cTt/cGt																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424639	47424639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078846-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	55	229	0	ENST00000404338.3:c.2707G>A	p.Glu903Lys	p.E903K	ENST00000404338	NM_004491.4	903	Gaa/Aaa																																																																															
TET2	54790	MSKCC	GRCh37	4	106157179	106157179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078846-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	79	259	0	ENST00000380013.4:c.2080C>A	p.Leu694Ile	p.L694I	ENST00000380013	NM_001127208.2	694	Ctt/Att																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913185	39913185	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078846-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	130	262	0	ENST00000378444.4:c.4930A>G	p.Thr1644Ala	p.T1644A	ENST00000378444	NM_001123385.1	1644	Acc/Gcc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347741	347741	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078846-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	72	297	0	ENST00000262320.3:c.1765A>C	p.Ser589Arg	p.S589R	ENST00000262320	NM_003502.3	589	Agt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0078847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	188	397	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0078847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	114	326	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0078847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	54	300	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0078847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	60	354	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577069	7577069	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55819519		P-0078847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	219	444	1	ENST00000269305.4:c.869G>A	p.Arg290His	p.R290H	ENST00000269305	NM_001126112.2	290	cGc/cAc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86629108	86629108	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137853218		P-0078847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	94	269	0	ENST00000274376.6:c.853C>T	p.Arg285Ter	p.R285*	ENST00000274376	NM_002890.2	285	Cga/Tga																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851828	63851828	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201944744		P-0078847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	75	417	0	ENST00000279873.7:c.2606C>A	p.Ser869Tyr	p.S869Y	ENST00000279873	NM_032199.2	869	tCt/tAt																																																																															
CYLD	1540	MSKCC	GRCh37	16	50815287	50815287	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779388734		P-0078847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	59	344	0	ENST00000398568.2:c.1640C>T	p.Pro547Leu	p.P547L	ENST00000398568	NM_001042412.1	547	cCg/cTg																																																																															
SDHB	6390	MSKCC	GRCh37	1	17371359	17371359	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777898500		P-0078847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	34	284	0	ENST00000375499.3:c.97G>A	p.Ala33Thr	p.A33T	ENST00000375499	NM_003000.2	33	Gca/Aca																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563414	21563414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	268	446	0	ENST00000382592.4:c.505C>T	p.Arg169Trp	p.R169W	ENST00000382592	NM_014572.2	169	Cgg/Tgg																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33681061	33681061	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs200518229		P-0078847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	165	316	0	ENST00000308377.4:c.1216C>T	p.Arg406Ter	p.R406*	ENST00000308377	NM_152270.3	406	Cga/Tga																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24145534	24145534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	236	433	0	ENST00000263121.7:c.553G>A	p.Val185Met	p.V185M	ENST00000263121	NM_003073.3	185	Gtg/Atg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646318	23646318	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0078847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	193	340	0	ENST00000261584.4:c.1549A>T	p.Lys517Ter	p.K517*	ENST00000261584	NM_024675.3	517	Aaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922321	178922321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	63	194	0	ENST00000263967.3:c.1090G>A	p.Gly364Arg	p.G364R	ENST00000263967	NM_006218.2	364	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0078849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	311	489	0	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
RHEB	6009	MSKCC	GRCh37	7	151188085	151188085	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867628277		P-0078849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	167	246	0	ENST00000262187.5:c.68C>T	p.Thr23Met	p.T23M	ENST00000262187	NM_005614.3	23	aCg/aTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941312	71941312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	154	543	0	ENST00000298229.2:c.1087C>A	p.Arg363Ser	p.R363S	ENST00000298229	NM_001567.3	363	Cgc/Agc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49442943	49442943	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	461	379	0	ENST00000301067.7:c.3965G>T	p.Arg1322Leu	p.R1322L	ENST00000301067	NM_003482.3	1322	cGt/cTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49442907	49442908	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	AAGCAGTTGACTTTAGCCGGGCCCGTCCTCTACC			P-0078849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	261	336	0	ENST00000301067.7:c.3967_4000dup	p.Ser1334TrpfsTer2	p.S1334Wfs*2	ENST00000301067	NM_003482.3	1334	tct/tGGTAGAGGACGGGCCCGGCTAAAGTCAACTGCTTct																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643332	38643332	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	268	333	0	ENST00000299084.4:c.806del	p.Asn269MetfsTer34	p.N269Mfs*34	ENST00000299084	NM_152594.2	268	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175509	112175509	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	148	390	0	ENST00000257430.4:c.4218G>T	p.Gln1406His	p.Q1406H	ENST00000257430	NM_000038.5	1406	caG/caT																																																																															
FLT1	2321	MSKCC	GRCh37	13	28880830	28880830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	213	348	0	ENST00000282397.4:c.3800C>T	p.Ala1267Val	p.A1267V	ENST00000282397	NM_002019.4	1267	gCc/gTc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972852	32972853	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0078849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	190	379	0	ENST00000380152.3:c.10202_10203delinsAA	p.Thr3401Lys	p.T3401K	ENST00000380152		3401	aCG/aAA																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965113	25965113	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	223	406	0	ENST00000435504.4:c.4093A>T	p.Thr1365Ser	p.T1365S	ENST00000435504		1365	Act/Tct																																																																															
JAK3	3718	MSKCC	GRCh37	19	17952205	17952205	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	237	306	0	ENST00000458235.1:c.1135C>A	p.Pro379Thr	p.P379T	ENST00000458235	NM_000215.3	379	Ccc/Acc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0078850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	334	318	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	211	388	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521721	89521721	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372594677		P-0078850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	65	328	0	ENST00000336596.2:c.2798C>T	p.Thr933Met	p.T933M	ENST00000336596	NM_005233.5	933	aCg/aTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70343538	70343538	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	46	264	0	ENST00000374080.3:c.1712T>A	p.Leu571Gln	p.L571Q	ENST00000374080		571	cTg/cAg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227821	53227821	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0078850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	164	321	0	ENST00000375401.3:c.2369-2A>T		p.X790_splice	ENST00000375401	NM_004187.3	790																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49431739	49431739	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	76	356	0	ENST00000301067.7:c.9400T>A	p.Phe3134Ile	p.F3134I	ENST00000301067	NM_003482.3	3134	Ttc/Atc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554341	141554341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	157	436	0	ENST00000220592.5:c.1810G>A	p.Gly604Arg	p.G604R	ENST00000220592	NM_012154.3	604	Ggg/Agg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40477048	40477048	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	169	387	1	ENST00000264657.5:c.1397A>G	p.Asn466Ser	p.N466S	ENST00000264657	NM_139276.2	466	aAc/aGc																																																																															
BLM	641	MSKCC	GRCh37	15	91303466	91303466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	159	360	0	ENST00000355112.3:c.1177C>A	p.Leu393Ile	p.L393I	ENST00000355112	NM_000057.2	393	Ctt/Att																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061212	38061223	+	frameshift_variant	Frame_Shift_Del	DEL	GTAGCAGCCGTT	GTAGCAGCCGTT	TG			P-0078860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	294	448	1	ENST00000250448.2:c.766_777delinsCA	p.Asn256HisfsTer62	p.N256Hfs*62	ENST00000250448	NM_004496.3	256	AACGGCTGCTAC/CA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0078863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	176	402	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0078863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	255	359	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
CIC	23152	MSKCC	GRCh37	19	42796574	42796574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	183	467	0	ENST00000575354.2:c.3131C>T	p.Ser1044Leu	p.S1044L	ENST00000575354	NM_015125.3	1044	tCg/tTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591909	48591911	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0078863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	176	435	0	ENST00000342988.3:c.1076_1078del	p.Gly359del	p.G359del	ENST00000342988	NM_005359.5	358	GGA/-																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743913	40743913	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375441200		P-0078863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			750	136	375	0	ENST00000373198.4:c.3082G>A	p.Gly1028Arg	p.G1028R	ENST00000373198	NM_133170.3	1028	Gga/Aga																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18280054	18280064	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCACCCAGT	GCGCACCCAGT	-			P-0078863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	27	310	0	ENST00000222254.8:c.2141_2151del	p.His714ArgfsTer93	p.H714Rfs*93	ENST00000222254	NM_005027.3	713	GCGCACCCAGTg/g																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0078897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	1337	428	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285021	15285021	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1012770337		P-0078897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	37	469	0	ENST00000263388.2:c.4594C>G	p.Leu1532Val	p.L1532V	ENST00000263388	NM_000435.2	1532	Ctg/Gtg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273781	18273781	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	28	484	0	ENST00000222254.8:c.1114G>T	p.Gly372Cys	p.G372C	ENST00000222254	NM_005027.3	372	Ggc/Tgc																																																																															
NF1	4763	MSKCC	GRCh37	17	29665798	29665798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	23	252	0	ENST00000358273.4:c.6896C>T	p.Thr2299Ile	p.T2299I	ENST00000358273	NM_001042492.2	2299	aCc/aTc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15822258	15822258	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	36	223	0	ENST00000307771.7:c.337G>C	p.Glu113Gln	p.E113Q	ENST00000307771	NM_005089.3	113	Gaa/Caa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874650	151874650	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	88	518	0	ENST00000262189.6:c.7888C>G	p.Pro2630Ala	p.P2630A	ENST00000262189	NM_170606.2	2630	Cca/Gca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8339011	8339011	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	32	372	0	ENST00000356435.5:c.5290G>T	p.Ala1764Ser	p.A1764S	ENST00000356435		1764	Gca/Tca																																																																															
XPO1	7514	MSKCC	GRCh37	2	61726022	61726025	+	missense_variant	Missense_Mutation	ONP	AATA	AATA	GATG			P-0078897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	46	259	0	ENST00000401558.2:c.614_617delinsCATC	p.Ile205_Phe206delinsThrSer	p.I205_F206delinsTS	ENST00000401558	NM_003400.3	205	aTATTt/aCATCt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0078903-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1969	90	376	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755525	57755525	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	49	363	0	ENST00000274289.3:c.262C>A	p.Leu88Met	p.L88M	ENST00000274289	NM_006622.3	88	Ctg/Atg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919734	50919734	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs878854545		P-0078906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	56	568	0	ENST00000440232.2:c.2902C>T	p.Arg968Cys	p.R968C	ENST00000440232	NM_002691.3	968	Cgc/Tgc																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020991	26020991	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1463045135		P-0078906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			800	85	597	0	ENST00000357647.3:c.274G>A	p.Ala92Thr	p.A92T	ENST00000357647	NM_003529.2	92	Gct/Act																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971154	21971246	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGG	CGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGG	TTT			P-0078906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	31	419	2	ENST00000304494.5:c.151-39_204delinsAAA		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
IRS1	3667	MSKCC	GRCh37	2	227660358	227660358	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	41	415	0	ENST00000305123.5:c.3097G>T	p.Ala1033Ser	p.A1033S	ENST00000305123	NM_005544.2	1033	Gct/Tct																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502837	186502837	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	204	412	0	ENST00000323963.5:c.295T>G	p.Phe99Val	p.F99V	ENST00000323963		99	Ttc/Gtc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509661	106509661	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	48	448	0	ENST00000359195.3:c.1655G>T	p.Arg552Leu	p.R552L	ENST00000359195	NM_002649.2	552	cGc/cTc																																																																															
FH	2271	MSKCC	GRCh37	1	241683015	241683015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	39	323	0	ENST00000366560.3:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000366560	NM_000143.3	3	cGa/cAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47127735	47127735	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	64	402	0	ENST00000409792.3:c.5347A>T	p.Met1783Leu	p.M1783L	ENST00000409792	NM_014159.6	1783	Atg/Ttg																																																																															
CDK6	1021	MSKCC	GRCh37	7	92462417	92462417	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1296475506		P-0078906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	34	284	0	ENST00000265734.4:c.221C>T	p.Pro74Leu	p.P74L	ENST00000265734	NM_001259.6	74	cCc/cTc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979988	7979988	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	52	451	0	ENST00000319144.4:c.1349G>T	p.Gly450Val	p.G450V	ENST00000319144	NM_001139.2	450	gGg/gTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68942886	68942886	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	43	328	0	ENST00000288368.4:c.698G>T	p.Gly233Val	p.G233V	ENST00000288368	NM_024870.2	233	gGc/gTc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72058637	72058637	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	33	301	0	ENST00000357731.5:c.803A>T	p.Gln268Leu	p.Q268L	ENST00000357731	NM_173808.2	268	cAa/cTa																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128018863	128018864	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0078906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	35	349	0	ENST00000285398.2:c.2004_2005delinsTT	p.Gln668_Glu669delinsHisTer	p.Q668_E669delinsH*	ENST00000285398	NM_000122.1	668	caGGaa/caTTaa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729937	30729938	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	45	402	0	ENST00000359013.4:c.1534dup	p.Met512AsnfsTer29	p.M512Nfs*29	ENST00000359013	NM_001024847.2	511	-/A																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246087	46246087	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	58	446	0	ENST00000334344.6:c.4181A>T	p.Glu1394Val	p.E1394V	ENST00000334344	NM_152641.2	1394	gAa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577552	7577553	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	95	364	0	ENST00000269305.4:c.728dup	p.Met243IlefsTer21	p.M243Ifs*21	ENST00000269305	NM_001126112.2	243	atg/atTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2199895	2199895	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	27	316	0	ENST00000398665.3:c.664G>C	p.Asp222His	p.D222H	ENST00000398665	NM_032482.2	222	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0078907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	54	330	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31464360	31464360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755033541		P-0078907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	35	317	0	ENST00000344624.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000344624		853	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0078907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	47	209	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974780	21974780	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	27	354	0	ENST00000304494.5:c.47T>C	p.Leu16Pro	p.L16P	ENST00000304494	NM_000077.4	16	cTg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0078917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	631	336	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
KDM5A	5927	MSKCC	GRCh37	12	431665	431665	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0078917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			857	91	300	0	ENST00000399788.2:c.2344C>T	p.Arg782Ter	p.R782*	ENST00000399788	NM_001042603.1	782	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971026	21971026	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	328	340	0	ENST00000304494.5:c.332del	p.Gly111AlafsTer35	p.G111Afs*35	ENST00000304494	NM_000077.4	111	gGc/gc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748095	41748095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			58	129	188	0	ENST00000226382.2:c.674G>A	p.Gly225Glu	p.G225E	ENST00000226382	NM_003924.3	225	gGg/gAg																																																																															
RHOA	387	MSKCC	GRCh37	3	49412890	49412890	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	229	274	0	ENST00000418115.1:c.133G>C	p.Asp45His	p.D45H	ENST00000418115	NM_001664.2	45	Gat/Cat																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298144	15298144	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	76	252	1	ENST00000263388.2:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000263388	NM_000435.2	538	Gag/Tag																																																																															
KLF5	688	MSKCC	GRCh37	13	73633589	73633589	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	89	213	0	ENST00000377687.4:c.124G>C	p.Asp42His	p.D42H	ENST00000377687	NM_001730.3	42	Gac/Cac																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246228	46246228	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	252	336	0	ENST00000334344.6:c.4322A>G	p.Gln1441Arg	p.Q1441R	ENST00000334344	NM_152641.2	1441	cAa/cGa																																																																															
SESN2	83667	MSKCC	GRCh37	1	28595705	28595705	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	115	312	0	ENST00000253063.3:c.102G>C	p.Glu34Asp	p.E34D	ENST00000253063	NM_031459.4	34	gaG/gaC																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484129	8484129	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	195	258	0	ENST00000356435.5:c.3403G>T	p.Glu1135Ter	p.E1135*	ENST00000356435		1135	Gag/Tag																																																																															
ATR	545	MSKCC	GRCh37	3	142177871	142177871	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	73	273	0	ENST00000350721.4:c.7432G>T	p.Gly2478Cys	p.G2478C	ENST00000350721	NM_001184.3	2478	Ggt/Tgt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400003	139400003	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	325	392	0	ENST00000277541.6:c.4345T>C	p.Cys1449Arg	p.C1449R	ENST00000277541	NM_017617.3	1449	Tgc/Cgc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799165	88799165	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	170	291	0	ENST00000360948.2:c.220A>G	p.Thr74Ala	p.T74A	ENST00000360948	NM_001012338.2	74	Acg/Gcg																																																																															
EP300	2033	MSKCC	GRCh37	22	41573015	41573015	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	270	443	0	ENST00000263253.7:c.5300A>T	p.His1767Leu	p.H1767L	ENST00000263253	NM_001429.3	1767	cAt/cTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273917	10273917	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	299	345	1	ENST00000330684.3:c.352T>A	p.Ser118Thr	p.S118T	ENST00000330684	NM_001134407.1	118	Tcc/Acc																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47598990	47598990	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	140	355	0	ENST00000395288.2:c.562del	p.His188ThrfsTer22	p.H188Tfs*22	ENST00000395288	NM_016506.5	188	Cac/ac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120650	115120650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	233	336	1	ENST00000257566.3:c.356G>T	p.Arg119Leu	p.R119L	ENST00000257566	NM_016569.3	119	cGg/cTg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9783265	9783265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	250	344	1	ENST00000377346.4:c.2509A>T	p.Ile837Phe	p.I837F	ENST00000377346	NM_005026.3	837	Atc/Ttc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560389	95560389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	253	324	0	ENST00000343455.3:c.5200G>C	p.Asp1734His	p.D1734H	ENST00000343455	NM_177438.2	1734	Gac/Cac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	129	408	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	75	304	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs767319284		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	88	400	1	ENST00000337652.1:c.1561dup	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	114	409	0	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432117	121432118	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs751449138		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	124	407	2	ENST00000257555.6:c.872dup	p.Gly292ArgfsTer25	p.G292Rfs*25	ENST00000257555		288	-/C																																																																															
POLE	5426	MSKCC	GRCh37	12	133215796	133215796	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753627422		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	40	312	0	ENST00000320574.5:c.5467C>T	p.Arg1823Cys	p.R1823C	ENST00000320574	NM_006231.2	1823	Cgc/Tgc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	149	435	2	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
CCND2	894	MSKCC	GRCh37	12	4409158	4409158	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1199912313		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	26	329	0	ENST00000261254.3:c.853C>T	p.Arg285Trp	p.R285W	ENST00000261254	NM_001759.3	285	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448480	49448480	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	176	393	0	ENST00000301067.7:c.231del	p.His77GlnfsTer53	p.H77Qfs*53	ENST00000301067	NM_003482.3	77	caC/ca																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50492742	50492742	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	45	368	0	ENST00000394963.4:c.1507C>T	p.Arg503Ter	p.R503*	ENST00000394963	NM_003076.4	503	Cga/Tga																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438317	110438322	+	inframe_deletion	In_Frame_Del	DEL	GTTGTT	GTTGTT	-	rs1269430357		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	40	250	0	ENST00000375856.3:c.79_84del	p.Asn27_Asn28del	p.N27_N28del	ENST00000375856	NM_003749.2	27	AACAAC/-																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907421	32907421	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs80359307		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	79	355	1	ENST00000380152.3:c.1813del	p.Ile605TyrfsTer9	p.I605Yfs*9	ENST00000380152		602	ggA/gg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658541	3658541	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs757662453		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	122	382	1	ENST00000294008.3:c.425del	p.Gly142ValfsTer52	p.G142Vfs*52	ENST00000294008	NM_032444.2	142	gGt/gt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789628	3789629	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	121	338	1	ENST00000262367.5:c.4230dup	p.Gly1411TrpfsTer10	p.G1411Wfs*10	ENST00000262367	NM_004380.2	1410	-/T																																																																															
NUP93	9688	MSKCC	GRCh37	16	56867231	56867231	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs528775471		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	123	330	0	ENST00000308159.5:c.1450C>T	p.Arg484Trp	p.R484W	ENST00000308159	NM_014669.4	484	Cgg/Tgg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81934267	81934267	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774111706		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	128	313	0	ENST00000359376.3:c.1244G>A	p.Arg415His	p.R415H	ENST00000359376	NM_002661.3	415	cGt/cAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346204	89346204	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201043388		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	93	435	1	ENST00000301030.4:c.6746G>A	p.Arg2249His	p.R2249H	ENST00000301030	NM_001256183.1	2249	cGc/cAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349641	89349641	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1064796815		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	129	355	1	ENST00000301030.4:c.3309del	p.Asp1104MetfsTer214	p.D1104Mfs*214	ENST00000301030	NM_001256183.1	1103	aaA/aa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89846290	89846290	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778754162		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	131	366	0	ENST00000389301.3:c.1702G>A	p.Val568Ile	p.V568I	ENST00000389301	NM_000135.2	568	Gtc/Atc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	108	396	1	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40441883	40441883	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	122	344	0	ENST00000345506.4:c.129-1G>A		p.X43_splice	ENST00000345506	NM_003152.3	43																																																																																
STAT5A	6776	MSKCC	GRCh37	17	40460234	40460234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	83	345	0	ENST00000345506.4:c.1945C>T	p.Arg649Trp	p.R649W	ENST00000345506	NM_003152.3	649	Cgg/Tgg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs758630849		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	252	323	0	ENST00000305921.3:c.1349del	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207065	1207065	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	53	410	0	ENST00000326873.7:c.157del	p.Asp53ThrfsTer11	p.D53Tfs*11	ENST00000326873	NM_000455.4	51	atG/at																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291831	15291831	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1286854173		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	97	373	1	ENST00000263388.2:c.2935G>A	p.Ala979Thr	p.A979T	ENST00000263388	NM_000435.2	979	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	56	477	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	186	389	5	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434182	12434182	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1187529076		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	127	351	2	ENST00000287820.6:c.556del	p.Ser186ValfsTer47	p.S186Vfs*47	ENST00000287820	NM_015869.4	184	Aaa/aa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	94	355	2	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715678	30715678	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886039551		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	150	354	0	ENST00000359013.4:c.1411G>A	p.Asp471Asn	p.D471N	ENST00000359013	NM_001024847.2	471	Gat/Aat																																																																															
MLH1	4292	MSKCC	GRCh37	3	37081682	37081682	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs63751703		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	109	286	0	ENST00000231790.2:c.1564C>T	p.Arg522Trp	p.R522W	ENST00000231790	NM_000249.3	522	Cgg/Tgg																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898393	63898393	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1187351635		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	47	218	3	ENST00000295900.6:c.119C>A	p.Pro40Gln	p.P40Q	ENST00000295900	NM_000333.3	40	cCg/cAg																																																																															
TET2	54790	MSKCC	GRCh37	4	106156320	106156321	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1296522926		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	153	505	0	ENST00000380013.4:c.1226dup	p.Pro410SerfsTer33	p.P410Sfs*33	ENST00000380013	NM_001127208.2	407	-/C																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245521	153245521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	147	303	0	ENST00000281708.4:c.1670G>T	p.Gly557Val	p.G557V	ENST00000281708	NM_033632.3	557	gGa/gTa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs758740142		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	133	252	0	ENST00000265335.6:c.2801del	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	101	347	1	ENST00000261937.6:c.89del	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589135	67589135	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	72	286	0	ENST00000274335.5:c.1127del	p.Gly376GlufsTer5	p.G376Efs*5	ENST00000274335		375	Ggg/gg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	82	269	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970922	79970922	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs71539687		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	131	270	0	ENST00000265081.6:c.1148A>G	p.Lys383Arg	p.K383R	ENST00000265081	NM_002439.4	383	aAg/aGg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199945	138199945	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	114	388	0	ENST00000237289.4:c.1368del	p.Pro457LeufsTer20	p.P457Lfs*20	ENST00000237289	NM_001270507.1	455	Ggg/gg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056155	26056155	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	115	362	0	ENST00000343677.2:c.502A>G	p.Lys168Glu	p.K168E	ENST00000343677	NM_005319.3	168	Aag/Gag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	130	315	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873275	151873275	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	157	292	0	ENST00000262189.6:c.9262+1G>A		p.X3088_splice	ENST00000262189	NM_170606.2	3088																																																																																
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	104	267	0	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956724	68956724	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs372931548		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	108	219	0	ENST00000288368.4:c.842G>A	p.Arg281Gln	p.R281Q	ENST00000288368	NM_024870.2	281	cGg/cAg																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	144	293	0	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs926053251		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	102	358	0	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98268793	98268793	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	53	320	0	ENST00000331920.6:c.290del	p.Asn97ThrfsTer20	p.N97Tfs*20	ENST00000331920	NM_000264.3	97	aAc/ac																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15821896	15821896	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	123	342	0	ENST00000307771.7:c.294del	p.Lys98AsnfsTer10	p.K98Nfs*10	ENST00000307771	NM_005089.3	97	Aaa/aa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53225198	53225198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	79	406	0	ENST00000375401.3:c.3020G>A	p.Arg1007His	p.R1007H	ENST00000375401	NM_004187.3	1007	cGt/cAt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412143	63412143	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs200303647		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	77	413	0	ENST00000330258.3:c.1024G>C	p.Asp342His	p.D342H	ENST00000330258	NM_152424.3	342	Gac/Cac																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412398	63412398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	110	444	0	ENST00000330258.3:c.769G>A	p.Asp257Asn	p.D257N	ENST00000330258	NM_152424.3	257	Gat/Aat																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412711	63412711	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	101	355	0	ENST00000330258.3:c.456G>C	p.Glu152Asp	p.E152D	ENST00000330258	NM_152424.3	152	gaG/gaC																																																																															
ATRX	546	MSKCC	GRCh37	X	76855029	76855029	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	17	324	0	ENST00000373344.5:c.5807A>G	p.Lys1936Arg	p.K1936R	ENST00000373344	NM_000489.3	1936	aAg/aGg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748446	162748446	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	79	378	0	ENST00000367921.3:c.2360A>G	p.Gln787Arg	p.Q787R	ENST00000367921	NM_006182.2	787	cAg/cGg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123244988	123244988	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	135	379	0	ENST00000358487.5:c.2116G>T	p.Gly706Trp	p.G706W	ENST00000358487	NM_000141.4	706	Ggg/Tgg																																																																															
CTR9	9646	MSKCC	GRCh37	11	10791821	10791821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	167	385	0	ENST00000361367.2:c.2174G>A	p.Arg725Gln	p.R725Q	ENST00000361367	NM_014633.3	725	cGg/cAg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871874	12871875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACGT			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	44	277	0	ENST00000228872.4:c.593_596dup	p.Ter199TyrfsTer7	p.*199Yfs*7	ENST00000228872	NM_004064.3	197	-/ACGT																																																																															
DICER1	23405	MSKCC	GRCh37	14	95566192	95566193	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	116	350	0	ENST00000343455.3:c.4130dup	p.Val1378CysfsTer19	p.V1378Cfs*19	ENST00000343455	NM_177438.2	1377	cct/ccCt																																																																															
CYLD	1540	MSKCC	GRCh37	16	50827512	50827512	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	136	301	0	ENST00000398568.2:c.2397C>A	p.Cys799Ter	p.C799*	ENST00000398568	NM_001042412.1	799	tgC/tgA																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86546572	86546572	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1449055651		P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	94	357	0	ENST00000262426.4:c.1021C>T	p.Arg341Ter	p.R341*	ENST00000262426	NM_001451.2	341	Cga/Tga																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52719126	52719126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	281	380	1	ENST00000322088.6:c.902C>T	p.Ala301Val	p.A301V	ENST00000322088	NM_014225.5	301	gCa/gTa																																																																															
ALK	238	MSKCC	GRCh37	2	29519790	29519790	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	116	354	0	ENST00000389048.3:c.1781A>G	p.Gln594Arg	p.Q594R	ENST00000389048	NM_004304.4	594	cAg/cGg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170015168	170015168	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	104	274	0	ENST00000295797.4:c.1574T>A	p.Val525Asp	p.V525D	ENST00000295797	NM_002740.5	525	gTt/gAt																																																																															
TET2	54790	MSKCC	GRCh37	4	106183004	106183004	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	91	204	0	ENST00000380013.4:c.4043A>C	p.Gln1348Pro	p.Q1348P	ENST00000380013	NM_001127208.2	1348	cAg/cCg																																																																															
REST	5978	MSKCC	GRCh37	4	57777006	57777006	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	140	373	0	ENST00000309042.7:c.202G>T	p.Gly68Cys	p.G68C	ENST00000309042	NM_005612.4	68	Ggt/Tgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295967	1295967	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	93	454	0				ENST00000310581	NM_198253.2																																																																																	
NSD1	64324	MSKCC	GRCh37	5	176562430	176562430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	148	399	0	ENST00000439151.2:c.326C>T	p.Thr109Met	p.T109M	ENST00000439151	NM_022455.4	109	aCg/aTg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31405785	31405785	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	49	235	0	ENST00000344624.3:c.3993del	p.Lys1331AsnfsTer22	p.K1331Nfs*22	ENST00000344624		1331	aaA/aa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056259	26056259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	136	452	0	ENST00000343677.2:c.398G>A	p.Gly133Glu	p.G133E	ENST00000343677	NM_005319.3	133	gGg/gAg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805939	32805939	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	108	402	0	ENST00000374899.4:c.72G>T	p.Gln24His	p.Q24H	ENST00000374899	NM_018833.2	24	caG/caT																																																																															
TAP1	6890	MSKCC	GRCh37	6	32820255	32820255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	119	347	0	ENST00000354258.4:c.803C>T	p.Thr268Met	p.T268M	ENST00000354258	NM_000593.5	268	aCg/aTg																																																																															
CCND3	896	MSKCC	GRCh37	6	41903784	41903784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	95	379	0	ENST00000372991.4:c.773C>T	p.Ala258Val	p.A258V	ENST00000372991	NM_001760.3	258	gCc/gTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859719	151859719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	161	386	0	ENST00000262189.6:c.10943C>T	p.Thr3648Ile	p.T3648I	ENST00000262189	NM_170606.2	3648	aCa/aTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860174	151860174	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	202	487	0	ENST00000262189.6:c.10488del	p.Ser3497ProfsTer14	p.S3497Pfs*14	ENST00000262189	NM_170606.2	3496	ccC/cc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486189	8486189	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	188	388	0	ENST00000356435.5:c.2628del	p.Glu877LysfsTer32	p.E877Kfs*32	ENST00000356435		876	aaA/aa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518415	8518415	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	68	289	0	ENST00000356435.5:c.976C>A	p.Pro326Thr	p.P326T	ENST00000356435		326	Cca/Aca																																																																															
PHF6	84295	MSKCC	GRCh37	X	133559271	133559273	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	91	295	0	ENST00000332070.3:c.1014_1016del	p.Glu338del	p.E338del	ENST00000332070	NM_032458.2	337	GAA/-																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933052	39933052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	130	439	0	ENST00000378444.4:c.1547C>A	p.Pro516His	p.P516H	ENST00000378444	NM_001123385.1	516	cCt/cAt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412054	63412054	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	29	442	0	ENST00000330258.3:c.1113G>C	p.Glu371Asp	p.E371D	ENST00000330258	NM_152424.3	371	gaG/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0078934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	124	347	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0078934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	35	244	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256535	115256535	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	108	332	0	ENST00000369535.4:c.176C>A	p.Ala59Asp	p.A59D	ENST00000369535	NM_002524.4	59	gCt/gAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210578	5210578	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1420539666		P-0078934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	47	405	0	ENST00000357368.4:c.5389G>A	p.Glu1797Lys	p.E1797K	ENST00000357368	NM_002850.3	1797	Gag/Aag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967083	18967083	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1290519072		P-0078934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	45	311	1	ENST00000262803.5:c.1798C>T	p.Arg600Cys	p.R600C	ENST00000262803	NM_002911.3	600	Cgc/Tgc																																																																															
MET	4233	MSKCC	GRCh37	7	116339253	116339253	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	71	339	0	ENST00000397752.3:c.115A>G	p.Met39Val	p.M39V	ENST00000397752	NM_000245.2	39	Atg/Gtg																																																																															
KLF5	688	MSKCC	GRCh37	13	73636656	73636656	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			841	78	482	0	ENST00000377687.4:c.919T>G	p.Ser307Ala	p.S307A	ENST00000377687	NM_001730.3	307	Tca/Gca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255406	16255406	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	118	359	0	ENST00000375759.3:c.2671A>G	p.Ile891Val	p.I891V	ENST00000375759	NM_015001.2	891	Att/Gtt																																																																															
NUF2	83540	MSKCC	GRCh37	1	163298655	163298655	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	54	256	0	ENST00000271452.3:c.295T>G	p.Cys99Gly	p.C99G	ENST00000271452	NM_145697.2	99	Tgc/Ggc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49280993	49280993	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200402832		P-0078937-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			759	133	360	0	ENST00000282018.3:c.40G>A	p.Val14Ile	p.V14I	ENST00000282018	NM_020377.2	14	Gta/Ata																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0078937-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	168	460	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226443	2226443	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773019943		P-0078937-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			793	159	439	0	ENST00000398665.3:c.3923C>T	p.Pro1308Leu	p.P1308L	ENST00000398665	NM_032482.2	1308	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112174349	112174349	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078937-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			712	82	360	0	ENST00000257430.4:c.3058G>T	p.Glu1020Ter	p.E1020*	ENST00000257430	NM_000038.5	1020	Gaa/Taa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044550	47044550	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078937-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	223	257	0	ENST00000329236.7:c.1813G>T	p.Glu605Ter	p.E605*	ENST00000329236	NM_001204466.1	605	Gag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120310	70120311	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0078937-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			782	117	506	0	ENST00000245479.2:c.1313dup	p.Gln439ThrfsTer139	p.Q439Tfs*139	ENST00000245479	NM_000346.3	438	tca/tCca																																																																															
FYN	2534	MSKCC	GRCh37	6	112041181	112041181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078937-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	138	392	0	ENST00000368678.4:c.74G>A	p.Ser25Asn	p.S25N	ENST00000368678		25	aGc/aAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98248009	98248009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078937-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			739	108	432	0	ENST00000331920.6:c.542C>T	p.Ser181Leu	p.S181L	ENST00000331920	NM_000264.3	181	tCg/tTg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258744	115258744	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434596		P-0078939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	187	309	0	ENST00000369535.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000369535	NM_002524.4	13	gGt/gAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711894	89711894	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs786204865		P-0078939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	252	344	2	ENST00000371953.3:c.512A>G	p.Gln171Arg	p.Q171R	ENST00000371953	NM_000314.4	171	cAg/cGg																																																																															
APC	324	MSKCC	GRCh37	5	112175521	112175521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	196	421	0	ENST00000257430.4:c.4230C>A	p.Cys1410Ter	p.C1410*	ENST00000257430	NM_000038.5	1410	tgC/tgA																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42843733	42843733	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs758128660		P-0078939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	240	344	0	ENST00000398585.3:c.1186G>A	p.Asp396Asn	p.D396N	ENST00000398585	NM_001135099.1	396	Gac/Aac																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931451	131931452	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs397507178		P-0078939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	164	345	3	ENST00000265335.6:c.2165dup	p.Glu723GlyfsTer5	p.E723Gfs*5	ENST00000265335		719	cta/ctAa																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971133	13971133	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	72	389	0	ENST00000405192.2:c.796G>C	p.Asp266His	p.D266H	ENST00000405192	NM_001163147.1	266	Gac/Cac																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18544135	18544135	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	21	322	0	ENST00000266497.5:c.1952A>T	p.Lys651Met	p.K651M	ENST00000266497		651	aAg/aTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277955	41277955	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	255	416	0	ENST00000349496.5:c.1919T>C	p.Leu640Pro	p.L640P	ENST00000349496	NM_001904.3	640	cTg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579467	7579467	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	351	546	0	ENST00000269305.4:c.220del	p.Ala74ProfsTer49	p.A74Pfs*49	ENST00000269305	NM_001126112.2	74	Gcc/cc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422128	47422128	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	175	375	0	ENST00000404338.3:c.196C>T	p.Arg66Ter	p.R66*	ENST00000404338	NM_004491.4	66	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29546098	29546098	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	273	395	0	ENST00000358273.4:c.1603C>T	p.Gln535Ter	p.Q535*	ENST00000358273	NM_001042492.2	535	Cag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881021	37881021	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs968832437		P-0078939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	375	526	0	ENST00000269571.5:c.2350C>T	p.Arg784Cys	p.R784C	ENST00000269571		784	Cgc/Tgc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165551	47165551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	313	558	0	ENST00000409792.3:c.575C>T	p.Pro192Leu	p.P192L	ENST00000409792	NM_014159.6	192	cCa/cTa																																																																															
FH	2271	MSKCC	GRCh37	1	241676977	241676977	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	179	347	0	ENST00000366560.3:c.304G>C	p.Ala102Pro	p.A102P	ENST00000366560	NM_000143.3	102	Gcg/Ccg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32931967	32931967	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			764	156	357	0	ENST00000380152.3:c.7706G>C	p.Gly2569Ala	p.G2569A	ENST00000380152		2569	gGt/gCt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591902	48591903	+	missense_variant	Missense_Mutation	DNP	CC	CC	GT			P-0078939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	141	450	0	ENST00000342988.3:c.1065_1066delinsGT	p.Asp355_Pro356delinsGluSer	p.D355_P356delinsES	ENST00000342988	NM_005359.5	355	gaCCct/gaGTct																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244362	5244362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	194	470	0	ENST00000357368.4:c.1120G>A	p.Gly374Arg	p.G374R	ENST00000357368	NM_002850.3	374	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0078950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	47	429	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	167	306	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																															
KDR	3791	MSKCC	GRCh37	4	55968597	55968597	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34038364		P-0078950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	104	243	0	ENST00000263923.4:c.2066C>T	p.Thr689Met	p.T689M	ENST00000263923	NM_002253.2	689	aCg/aTg																																																																															
RHOA	387	MSKCC	GRCh37	3	49397811	49397811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	109	288	0	ENST00000418115.1:c.413C>T	p.Pro138Leu	p.P138L	ENST00000418115	NM_001664.2	138	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0078950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	60	225	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222212	6222212	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1237687182		P-0078950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	90	412	0	ENST00000252674.7:c.1030G>A	p.Glu344Lys	p.E344K	ENST00000252674	NM_005934.3	344	Gag/Aag																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39593487	39593487	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	16	256	0	ENST00000262039.4:c.1252A>T	p.Thr418Ser	p.T418S	ENST00000262039	NM_002647.2	418	Acc/Tcc																																																																															
MTAP	4507	MSKCC	GRCh37	9	21818146	21818146	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	23	317	0	ENST00000380172.4:c.292T>A	p.Leu98Met	p.L98M	ENST00000380172	NM_002451.3	98	Ttg/Atg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323201	31323202	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0078950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	141	438	0	ENST00000412585.2:c.786_787dup	p.Arg263IlefsTer35	p.R263Ifs*35	ENST00000412585	NM_005514.6	263	aga/aTAga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521690	89521690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	27	317	0	ENST00000336596.2:c.2767G>A	p.Val923Ile	p.V923I	ENST00000336596	NM_005233.5	923	Gtc/Atc																																																																															
JUN	3725	MSKCC	GRCh37	1	59247748	59247748	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			P-0078995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	313	381	0	ENST00000371222.2:c.995G>C	p.Ter332SerextTer7	p.*332Sext*7	ENST00000371222	NM_002228.3	332	tGa/tCa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858369	9858369	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1163766811		P-0078995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	122	459	0	ENST00000330684.3:c.3032G>A	p.Arg1011Gln	p.R1011Q	ENST00000330684	NM_001134407.1	1011	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1206165503		P-0078995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	318	437	0	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0078995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	79	253	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175193	112175193	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	110	346	0	ENST00000257430.4:c.3904del	p.Leu1302CysfsTer3	p.L1302Cfs*3	ENST00000257430	NM_000038.5	1301	aCc/ac																																																																															
EED	8726	MSKCC	GRCh37	11	85979566	85979567	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0078995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	142	275	0	ENST00000263360.6:c.931dup	p.Cys311LeufsTer12	p.C311Lfs*12	ENST00000263360	NM_003797.3	310	gat/gaTt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56490629	56490629	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0078995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	113	355	0	ENST00000267101.3:c.2273A>T	p.Asp758Val	p.D758V	ENST00000267101	NM_001982.3	758	gAt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057727	27057727	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019972-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			564	127	470	0	ENST00000324856.7:c.1435C>T	p.Gln479Ter	p.Q479*	ENST00000324856	NM_006015.4	479	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578440	7578440	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs879254249		P-0019972-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			519	217	514	0	ENST00000269305.4:c.490A>G	p.Lys164Glu	p.K164E	ENST00000269305	NM_001126112.2	164	Aag/Gag																																																																															
KIT	3815	MSKCC	GRCh37	4	55604715	55604715	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373152714		P-0019972-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			571	37	348	0	ENST00000288135.5:c.2923G>A	p.Asp975Asn	p.D975N	ENST00000288135	NM_000222.2	975	Gat/Aat																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29120997	29120997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019972-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			315	75	283	0	ENST00000328354.6:c.560C>T	p.Ser187Phe	p.S187F	ENST00000328354	NM_007194.3	187	tCt/tTt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59926528	59926528	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019972-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			523	32	286	0	ENST00000259008.2:c.469G>C	p.Glu157Gln	p.E157Q	ENST00000259008	NM_032043.2	157	Gag/Cag																																																																															
NF2	4771	MSKCC	GRCh37	22	30032797	30032797	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019972-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			490	65	388	0	ENST00000338641.4:c.172G>T	p.Glu58Ter	p.E58*	ENST00000338641	NM_000268.3	58	Gaa/Taa																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78428504	78428504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019972-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			585	53	309	0	ENST00000370768.2:c.1295C>T	p.Thr432Ile	p.T432I	ENST00000370768	NM_003902.3	432	aCt/aTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0029071-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			319	193	289	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029071-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			202	46	243	0	ENST00000263121.7:c.1130G>T	p.Arg377Leu	p.R377L	ENST00000263121	NM_003073.3	377	cGt/cTt																																																																															
TET1	80312	MSKCC	GRCh37	10	70332409	70332409	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200477577		P-0029071-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			340	58	294	0	ENST00000373644.4:c.314C>T	p.Ala105Val	p.A105V	ENST00000373644	NM_030625.2	105	gCg/gTg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128206793	128206793	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029071-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			283	67	255	0	ENST00000265960.3:c.1430A>C	p.Glu477Ala	p.E477A	ENST00000265960	NM_001006617.1	477	gAa/gCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0032546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			221	22	351	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47705445	47705445	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs63751477		P-0032546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			168	11	324	0	ENST00000233146.2:c.2245G>A	p.Glu749Lys	p.E749K	ENST00000233146	NM_000251.2	749	Gaa/Aaa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714460	40714460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			289	31	527	0	ENST00000373198.4:c.3937G>T	p.Gly1313Trp	p.G1313W	ENST00000373198	NM_133170.3	1313	Ggg/Tgg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099658	157099658	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			243	17	312	0	ENST00000346085.5:c.595C>A	p.Arg199Ser	p.R199S	ENST00000346085	NM_020732.3	199	Cgc/Agc																																																																															
NF1	4763	MSKCC	GRCh37	17	29490314	29490314	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			244	19	376	0	ENST00000358273.4:c.399A>T	p.Glu133Asp	p.E133D	ENST00000358273	NM_001042492.2	133	gaA/gaT																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751885	57751885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032546-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			261	30	393	0	ENST00000274289.3:c.1352G>A	p.Gly451Glu	p.G451E	ENST00000274289	NM_006622.3	451	gGg/gAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0034244-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			479	57	407	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0034244-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			415	63	470	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2949765	2949765	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779393690		P-0034244-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			438	56	424	2	ENST00000396946.4:c.3179G>A	p.Cys1060Tyr	p.C1060Y	ENST00000396946	NM_032415.4	1060	tGc/tAc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56477544	56477544	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034244-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			451	93	301	1	ENST00000267101.3:c.92G>C	p.Gly31Ala	p.G31A	ENST00000267101	NM_001982.3	31	gGg/gCg																																																																															
KIT	3815	MSKCC	GRCh37	4	55604649	55604649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034244-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			503	42	549	0	ENST00000288135.5:c.2857C>A	p.His953Asn	p.H953N	ENST00000288135	NM_000222.2	953	Cat/Aat																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862852	9862852	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034244-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			402	37	453	0	ENST00000330684.3:c.2451G>T	p.Met817Ile	p.M817I	ENST00000330684	NM_001134407.1	817	atG/atT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0039656-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			188	61	145	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDK6	1021	MSKCC	GRCh37	7	92244546	92244546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039656-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			542	74	303	0	ENST00000265734.4:c.889C>T	p.His297Tyr	p.H297Y	ENST00000265734	NM_001259.6	297	Cac/Tac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72833936	72833955	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTGCCTCTTCCAAATTGG	TCCTGCCTCTTCCAAATTGG	-			P-0039656-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			206	91	202	0	ENST00000268489.5:c.3938_3957del	p.Ser1313Ter	p.S1313*	ENST00000268489	NM_006885.3	1313	tCCAATTTGGAAGAGGCAGGA/t																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609994	81609994	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750198847		P-0046029-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			809	66	165	0	ENST00000298171.2:c.1592G>A	p.Arg531Gln	p.R531Q	ENST00000298171	NM_000369.2	531	cGg/cAg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610154	10610154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046029-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			500	108	126	0	ENST00000171111.5:c.556G>T	p.Gly186Cys	p.G186C	ENST00000171111	NM_203500.1	186	Ggc/Tgc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341111	8341111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046029-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			334	66	135	0	ENST00000356435.5:c.5105C>T	p.Ala1702Val	p.A1702V	ENST00000356435		1702	gCc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046029-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			318	91	140	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141040	55141040	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046029-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			487	32	138	0	ENST00000257290.5:c.1686T>G	p.Ile562Met	p.I562M	ENST00000257290	NM_006206.4	562	atT/atG																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530095	63530095	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046029-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			518	38	120	0	ENST00000307078.5:c.2340G>T	p.Met780Ile	p.M780I	ENST00000307078	NM_004655.3	780	atG/atT																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245976	5245976	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046029-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			510	87	124	0	ENST00000357368.4:c.799G>T	p.Val267Leu	p.V267L	ENST00000357368	NM_002850.3	267	Gtg/Ttg																																																																															
FYN	2534	MSKCC	GRCh37	6	112029163	112029163	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046029-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			373	72	127	0	ENST00000368678.4:c.405C>A	p.Ser135Arg	p.S135R	ENST00000368678		135	agC/agA																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99160440	99160440	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046029-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			610	93	130	0	ENST00000074304.5:c.919G>T	p.Glu307Ter	p.E307*	ENST00000074304	NM_001134224.1	307	Gag/Tag																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138453531	138453531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046029-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			422	76	122	0	ENST00000289153.2:c.917G>T	p.Arg306Leu	p.R306L	ENST00000289153	NM_006219.2	306	cGa/cTa																																																																															
CBFB	865	MSKCC	GRCh37	16	67100694	67100694	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046029-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			429	59	146	0	ENST00000412916.2:c.392G>T	p.Arg131Leu	p.R131L	ENST00000412916		131	cGa/cTa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123239508	123239508	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs374993905		P-0046029-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			714	50	197	0	ENST00000358487.5:c.2329G>C	p.Glu777Gln	p.E777Q	ENST00000358487	NM_000141.4	777	Gaa/Caa																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61328286	61328286	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0046029-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			478	43	151	0	ENST00000283752.5:c.165G>T	p.Lys55Asn	p.K55N	ENST00000283752	NM_006919.2	55	aaG/aaT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770600	40770600	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046029-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			474	45	157	0	ENST00000373198.4:c.2782G>T	p.Glu928Ter	p.E928*	ENST00000373198	NM_133170.3	928	Gag/Tag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646304	3646304	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046029-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			510	44	117	0	ENST00000294008.3:c.1774A>T	p.Thr592Ser	p.T592S	ENST00000294008	NM_032444.2	592	Act/Tct																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989622	212989622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046029-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			614	66	112	0	ENST00000342788.4:c.89C>A	p.Ala30Glu	p.A30E	ENST00000342788	NM_005235.2	30	gCa/gAa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646245	23646245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046029-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			405	30	133	0	ENST00000261584.4:c.1622G>A	p.Arg541Lys	p.R541K	ENST00000261584	NM_024675.3	541	aGg/aAg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663106	227663106	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046029-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			624	152	100	0	ENST00000305123.5:c.349G>T	p.Ala117Ser	p.A117S	ENST00000305123	NM_005544.2	117	Gct/Tct																																																																															
LYN	4067	MSKCC	GRCh37	8	56854536	56854536	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046029-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			512	35	125	0	ENST00000519728.1:c.118A>G	p.Lys40Glu	p.K40E	ENST00000519728	NM_002350.3	40	Aaa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0046351-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			59	42	167	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046351-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	18	325	2	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371953	55371953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046351-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	105	294	0	ENST00000297316.4:c.643G>A	p.Asp215Asn	p.D215N	ENST00000297316	NM_022454.3	215	Gac/Aac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057850	27057850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046351-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			386	154	406	0	ENST00000324856.7:c.1558C>T	p.Gln520Ter	p.Q520*	ENST00000324856	NM_006015.4	520	Cag/Tag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419921	152419922	+	missense_variant	Missense_Mutation	DNP	CT	CT	TA			P-0046351-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			299	121	320	0	ENST00000206249.3:c.1608_1609delinsTA	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	536	ctCTat/ctTAat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845820	151845820	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046351-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			249	131	358	0	ENST00000262189.6:c.13192G>C	p.Asp4398His	p.D4398H	ENST00000262189	NM_170606.2	4398	Gac/Cac																																																																															
CDH1	999	MSKCC	GRCh37	16	68853329	68853329	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0046351-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			88	104	211	0	ENST00000261769.5:c.1711+1G>T		p.X571_splice	ENST00000261769	NM_004360.3	571																																																																																
NSD1	64324	MSKCC	GRCh37	5	176637529	176637529	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046351-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			486	123	319	0	ENST00000439151.2:c.2129A>C	p.Asp710Ala	p.D710A	ENST00000439151	NM_022455.4	710	gAc/gCc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845793	151845793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046351-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			285	127	333	0	ENST00000262189.6:c.13219G>A	p.Glu4407Lys	p.E4407K	ENST00000262189	NM_170606.2	4407	Gaa/Aaa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48028051	48028051	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046351-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	115	300	0	ENST00000234420.5:c.2929T>A	p.Tyr977Asn	p.Y977N	ENST00000234420	NM_000179.2	977	Tac/Aac																																																																															
CTR9	9646	MSKCC	GRCh37	11	10800482	10800482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046351-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			211	94	232	0	ENST00000361367.2:c.3352G>C	p.Glu1118Gln	p.E1118Q	ENST00000361367	NM_014633.3	1118	Gag/Cag																																																																															
AKT3	10000	MSKCC	GRCh37	1	243809273	243809273	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046351-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	89	247	0	ENST00000263826.5:c.351G>C	p.Met117Ile	p.M117I	ENST00000263826	NM_005465.4	117	atG/atC																																																																															
ROS1	6098	MSKCC	GRCh37	6	117725487	117725489	+	missense_variant	Missense_Mutation	ONP	GAA	GAA	TAT			P-0046351-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			178	65	238	0	ENST00000368508.3:c.392_394delinsATA	p.Ile131_Gln132delinsAsnLys	p.I131_Q132delinsNK	ENST00000368508	NM_002944.2	131	aTTCag/aATAag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0052293-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			65	12	444	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0052293-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			53	9	379	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0052293-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			75	10	539	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045190	47045190	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0054630-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			146	322	259	0	ENST00000329236.7:c.2196+1G>T		p.X732_splice	ENST00000329236	NM_001204466.1	732																																																																																
MTOR	2475	MSKCC	GRCh37	1	11174437	11174437	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054630-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			218	261	281	0	ENST00000361445.4:c.7238G>T	p.Ser2413Ile	p.S2413I	ENST00000361445	NM_004958.3	2413	aGt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578513	7578513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054630-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			293	373	522	0	ENST00000269305.4:c.417G>T	p.Lys139Asn	p.K139N	ENST00000269305	NM_001126112.2	139	aaG/aaT																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144066	55144066	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054630-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			453	237	213	0	ENST00000257290.5:c.1895C>A	p.Thr632Lys	p.T632K	ENST00000257290	NM_006206.4	632	aCg/aAg																																																																															
ATM	472	MSKCC	GRCh37	11	108202225	108202225	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs769142993		P-0054630-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			161	311	109	0	ENST00000278616.4:c.7570G>C	p.Ala2524Pro	p.A2524P	ENST00000278616	NM_000051.3	2524	Gct/Cct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054630-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			127	287	139	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NPM1	4869	MSKCC	GRCh37	5	170818709	170818710	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0054630-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			315	126	108	0	ENST00000296930.5:c.259-1_259delinsTT		p.X87_splice	ENST00000296930	NM_002520.6	87																																																																																
MED12	9968	MSKCC	GRCh37	X	70347872	70347873	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0054630-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			164	324	186	0	ENST00000374080.3:c.3111_3112delinsCT	p.Gly1038Trp	p.G1038W	ENST00000374080		1037	acGGgg/acCTgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306575	41306575	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054630-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			208	380	439	0	ENST00000373198.4:c.1084C>A	p.Leu362Ile	p.L362I	ENST00000373198	NM_133170.3	362	Ctc/Atc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798804	45798805	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054630-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			294	319	516	0	ENST00000372115.3:c.384dup	p.Ala129CysfsTer110	p.A129Cfs*110	ENST00000372115	NM_001048171.1	128	-/T																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0057890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	416	386	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0057890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	250	476	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662637	227662637	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	29	427	0	ENST00000305123.5:c.818C>G	p.Ser273Trp	p.S273W	ENST00000305123	NM_005544.2	273	tCg/tGg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472425	88472425	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058518-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			743	98	343	0	ENST00000360948.2:c.2130C>A	p.Tyr710Ter	p.Y710*	ENST00000360948	NM_001012338.2	710	taC/taA																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3823919	3823919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058518-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			777	77	357	0	ENST00000262367.5:c.2296C>T	p.Pro766Ser	p.P766S	ENST00000262367	NM_004380.2	766	Cct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0058518-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			914	145	436	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176520413	176520413	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058518-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			869	109	399	0	ENST00000292408.4:c.1258C>A	p.Leu420Met	p.L420M	ENST00000292408	NM_213647.1	420	Ctg/Atg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039338	47039338	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058518-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			840	124	451	0	ENST00000329236.7:c.730G>C	p.Ala244Pro	p.A244P	ENST00000329236	NM_001204466.1	244	Gca/Cca																																																																															
MED12	9968	MSKCC	GRCh37	X	70346005	70346005	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0058518-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			720	132	351	0	ENST00000374080.3:c.2541+1G>T		p.X847_splice	ENST00000374080		847																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56495091	56495091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058518-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			995	58	447	0	ENST00000267101.3:c.3448G>C	p.Gly1150Arg	p.G1150R	ENST00000267101	NM_001982.3	1150	Ggg/Cgg																																																																															
MGA	23269	MSKCC	GRCh37	15	41961502	41961502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058518-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			786	48	384	0	ENST00000219905.7:c.410G>T	p.Trp137Leu	p.W137L	ENST00000219905	NM_001164273.1	137	tGg/tTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89352459	89352459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058518-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1007	82	416	0	ENST00000301030.4:c.880G>A	p.Glu294Lys	p.E294K	ENST00000301030	NM_001256183.1	294	Gag/Aag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89352569	89352569	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1305682290		P-0058518-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			779	46	296	0	ENST00000301030.4:c.770G>A	p.Gly257Glu	p.G257E	ENST00000301030	NM_001256183.1	257	gGa/gAa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670551	134670551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058518-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			752	94	392	0	ENST00000398015.3:c.462G>T	p.Arg154Ser	p.R154S	ENST00000398015	NM_004441.4	154	agG/agT																																																																															
MET	4233	MSKCC	GRCh37	7	116411971	116411993	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCGAAGTGTAAGCCCAACTAC	GCCCGAAGTGTAAGCCCAACTAC	T			P-0058518-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			800	166	425	0	ENST00000397752.3:c.2956_2978delinsT	p.Ala986Ter	p.A986*	ENST00000397752	NM_000245.2	986	GCCCGAAGTGTAAGCCCAACTACa/Ta																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933226	39933226	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058518-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			980	110	462	0	ENST00000378444.4:c.1373T>C	p.Met458Thr	p.M458T	ENST00000378444	NM_001123385.1	458	aTg/aCg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922829	44922829	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058518-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			862	117	413	0	ENST00000377967.4:c.1690G>T	p.Gly564Trp	p.G564W	ENST00000377967	NM_021140.2	564	Ggg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913389		P-0062924-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	37	439	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0062924-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	32	266	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578246	7578247	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAAT			P-0062924-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	41	569	1	ENST00000269305.4:c.599_602dup	p.Arg202PhefsTer8	p.R202Ffs*8	ENST00000269305	NM_001126112.2	201	ttg/ttATTTg																																																																															
MDM4	4194	MSKCC	GRCh37	1	204495548	204495548	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0062924-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	15	270	0	ENST00000367182.3:c.139T>G	p.Phe47Val	p.F47V	ENST00000367182	NM_001278516.1	47	Ttc/Gtc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433342	49433342	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0062924-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	24	453	0	ENST00000301067.7:c.8105del	p.Gln2702ArgfsTer31	p.Q2702Rfs*31	ENST00000301067	NM_003482.3	2702	cAg/cg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0063543-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			127	435	367	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0063543-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			200	262	510	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520009		P-0063543-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			435	237	410	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063543-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			264	474	441	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420203	49420204	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0063543-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			473	270	525	1	ENST00000301067.7:c.15545dup	p.Leu5183ProfsTer16	p.L5183Pfs*16	ENST00000301067	NM_003482.3	5182	ggc/ggGc																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6216434	6216434	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063543-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			535	39	436	0	ENST00000252674.7:c.1289A>G	p.Asn430Ser	p.N430S	ENST00000252674	NM_005934.3	430	aAc/aGc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11292524	11292524	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063543-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			387	200	361	0	ENST00000361445.4:c.2483T>C	p.Leu828Pro	p.L828P	ENST00000361445	NM_004958.3	828	cTc/cCc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0064391-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			590	98	422	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0064391-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			496	271	497	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064391-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			422	76	342	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054710	5054710	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0064391-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			511	120	521	0	ENST00000381652.3:c.762T>A	p.Tyr254Ter	p.Y254*	ENST00000381652	NM_004972.3	254	taT/taA																																																																															
POLE	5426	MSKCC	GRCh37	12	133257746	133257746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064391-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			677	145	502	0	ENST00000320574.5:c.182G>A	p.Gly61Asp	p.G61D	ENST00000320574	NM_006231.2	61	gGc/gAc																																																																															
CTR9	9646	MSKCC	GRCh37	11	10774219	10774219	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0064391-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			539	98	389	0	ENST00000361367.2:c.46G>T	p.Val16Phe	p.V16F	ENST00000361367	NM_014633.3	16	Gtc/Ttc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			113	101	203	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092809	27092809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			201	178	376	0	ENST00000324856.7:c.2830C>T	p.Gln944Ter	p.Q944*	ENST00000324856	NM_006015.4	944	Cag/Tag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			299	113	344	0	ENST00000397062.3:c.101G>C	p.Arg34Pro	p.R34P	ENST00000397062	NM_006164.4	34	cGa/cCa																																																																															
ATM	472	MSKCC	GRCh37	11	108178702	108178702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			157	80	307	0	ENST00000278616.4:c.5753G>A	p.Arg1918Lys	p.R1918K	ENST00000278616	NM_000051.3	1918	aGa/aAa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162722960	162722960	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			188	146	365	0	ENST00000367921.3:c.158C>G	p.Ser53Ter	p.S53*	ENST00000367921	NM_006182.2	53	tCa/tGa																																																																															
AKT1	207	MSKCC	GRCh37	14	105242030	105242030	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1319030326		P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			238	247	398	0	ENST00000349310.3:c.394G>A	p.Glu132Lys	p.E132K	ENST00000349310	NM_001014432.1	132	Gaa/Aaa																																																																															
HGF	3082	MSKCC	GRCh37	7	81346637	81346637	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			156	146	365	0	ENST00000222390.5:c.1316A>G	p.Tyr439Cys	p.Y439C	ENST00000222390	NM_000601.4	439	tAc/tGc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206661320	206661320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			289	102	392	0	ENST00000367120.3:c.1686G>A	p.Met562Ile	p.M562I	ENST00000367120	NM_014002.3	562	atG/atA																																																																															
TP63	8626	MSKCC	GRCh37	3	189604263	189604263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			706	100	375	0	ENST00000264731.3:c.1430C>T	p.Ser477Phe	p.S477F	ENST00000264731	NM_003722.4	477	tCt/tTt																																																																															
ATM	472	MSKCC	GRCh37	11	108178697	108178697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	85	330	0	ENST00000278616.4:c.5748G>A	p.Met1916Ile	p.M1916I	ENST00000278616	NM_000051.3	1916	atG/atA																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437376	110437376	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776945626		P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			193	54	228	0	ENST00000375856.3:c.1025C>T	p.Ser342Leu	p.S342L	ENST00000375856	NM_003749.2	342	tCg/tTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425694	49425694	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			228	273	456	0	ENST00000301067.7:c.12794del	p.Gly4265AlafsTer13	p.G4265Afs*13	ENST00000301067	NM_003482.3	4265	gGc/gc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220590	1220590	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782379		P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	114	431	0	ENST00000326873.7:c.608C>T	p.Pro203Leu	p.P203L	ENST00000326873	NM_000455.4	203	cCg/cTg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123243214	123243214	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			414	152	472	0	ENST00000358487.5:c.2299G>A	p.Glu767Lys	p.E767K	ENST00000358487	NM_000141.4	767	Gag/Aag																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731646	47731646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			217	220	365	0	ENST00000449228.1:c.146G>A	p.Arg49Lys	p.R49K	ENST00000449228	NM_001127240.2	49	aGa/aAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32893246	32893246	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80358391		P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			180	90	311	0	ENST00000380152.3:c.100G>A	p.Glu34Lys	p.E34K	ENST00000380152		34	Gaa/Aaa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117663641	117663641	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs531086338		P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			22	174	256	0	ENST00000368508.3:c.4591G>A	p.Ala1531Thr	p.A1531T	ENST00000368508	NM_002944.2	1531	Gct/Act																																																																															
ALB	213	MSKCC	GRCh37	4	74283273	74283273	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			52	173	271	0	ENST00000295897.4:c.1315G>T	p.Val439Leu	p.V439L	ENST00000295897	NM_000477.5	439	Gta/Tta																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436964	49436964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			307	53	333	0	ENST00000301067.7:c.5539G>A	p.Glu1847Lys	p.E1847K	ENST00000301067	NM_003482.3	1847	Gag/Aag																																																																															
SOS1	6654	MSKCC	GRCh37	2	39249903	39249903	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs753909912		P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			298	113	329	0	ENST00000402219.2:c.1666G>C	p.Val556Leu	p.V556L	ENST00000402219	NM_005633.3	556	Gta/Cta																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31422901	31422901	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			320	73	296	0	ENST00000344624.3:c.3412C>G	p.Leu1138Val	p.L1138V	ENST00000344624		1138	Ctg/Gtg																																																																															
GAB2	9846	MSKCC	GRCh37	11	77961385	77961385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			400	122	380	0	ENST00000361507.4:c.438C>A	p.Ser146Arg	p.S146R	ENST00000361507	NM_080491.2	146	agC/agA																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25497812	25497812	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			277	90	321	0	ENST00000264709.3:c.637G>T	p.Glu213Ter	p.E213*	ENST00000264709	NM_175629.2	213	Gag/Tag																																																																															
ALB	213	MSKCC	GRCh37	4	74280772	74280772	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			52	166	312	0	ENST00000295897.4:c.1079G>C	p.Arg360Thr	p.R360T	ENST00000295897	NM_000477.5	360	aGa/aCa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193107302	193107302	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			147	62	298	0	ENST00000367435.3:c.511A>T	p.Arg171Trp	p.R171W	ENST00000367435	NM_024529.4	171	Agg/Tgg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29095919	29095919	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			217	205	308	0	ENST00000328354.6:c.915A>T	p.Glu305Asp	p.E305D	ENST00000328354	NM_007194.3	305	gaA/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578453	+	splice_donor_variant,splice_acceptor_variant,frameshift_variant,stop_lost,intron_variant	Splice_Site	DEL	GCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATG	GCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATG	-			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			130	303	501	0	ENST00000269305.4:c.477_577del		p.X159_splice	ENST00000269305	NM_001126112.2	159	gcCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGATGGTGAGCAGCTGGGGCTGGAGAGACGACAGGGCTGGTTGCCCAGGGTCCCCAGGCCTCTGATTCCTCACTGATTGCTCTTAGGTCTGGCCCCTCCTCAGCat/gcat																																																																															
KDR	3791	MSKCC	GRCh37	4	55955946	55955946	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			237	88	375	0	ENST00000263923.4:c.3216G>C	p.Met1072Ile	p.M1072I	ENST00000263923	NM_002253.2	1072	atG/atC																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185183641	185183641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			506	110	333	0	ENST00000265026.3:c.1495G>A	p.Glu499Lys	p.E499K	ENST00000265026	NM_004721.4	499	Gag/Aag																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61305237	61305237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			265	78	250	0	ENST00000341074.5:c.889G>A	p.Asp297Asn	p.D297N	ENST00000341074	NM_002974.2	297	Gac/Aac																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52729043	52729043	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	97	428	0	ENST00000322088.6:c.1735G>C	p.Ala579Pro	p.A579P	ENST00000322088	NM_014225.5	579	Gcc/Ccc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47492873	47492873	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			373	63	372	0	ENST00000404338.3:c.3977C>G	p.Ser1326Ter	p.S1326*	ENST00000404338	NM_004491.4	1326	tCa/tGa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575368	64575368	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			441	149	474	0	ENST00000337652.1:c.664G>T	p.Glu222Ter	p.E222*	ENST00000337652	NM_130803.2	222	Gag/Tag																																																																															
FLT1	2321	MSKCC	GRCh37	13	28901646	28901646	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			237	80	286	0	ENST00000282397.4:c.2749C>G	p.Leu917Val	p.L917V	ENST00000282397	NM_002019.4	917	Ctc/Gtc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075257	16075257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			110	231	373	0	ENST00000268712.3:c.295G>A	p.Val99Met	p.V99M	ENST00000268712	NM_006311.3	99	Gtg/Atg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900963	3900963	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			305	39	341	0	ENST00000262367.5:c.133A>T	p.Ile45Leu	p.I45L	ENST00000262367	NM_004380.2	45	Ata/Tta																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953953	32953953	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			163	58	311	0	ENST00000380152.3:c.9020G>C	p.Arg3007Thr	p.R3007T	ENST00000380152		3007	aGa/aCa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373554	118373554	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868962249		P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			232	122	342	0	ENST00000534358.1:c.6947C>T	p.Ser2316Phe	p.S2316F	ENST00000534358	NM_005933.3	2316	tCc/tTc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281022	49281022	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			275	84	384	0	ENST00000282018.3:c.69C>A	p.Phe23Leu	p.F23L	ENST00000282018	NM_020377.2	23	ttC/ttA																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204651	128204651	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	299	411	0	ENST00000341105.2:c.790C>G	p.Leu264Val	p.L264V	ENST00000341105	NM_032638.4	264	Ctc/Gtc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41197775	41197775	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730881501		P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			115	325	426	0	ENST00000357654.3:c.5512G>T	p.Val1838Leu	p.V1838L	ENST00000357654	NM_007294.3	1838	Gtg/Ttg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185183575	185183575	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185398541		P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			614	108	337	0	ENST00000265026.3:c.1429G>A	p.Glu477Lys	p.E477K	ENST00000265026	NM_004721.4	477	Gag/Aag																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748048	72748048	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	76	384	0	ENST00000357731.5:c.130G>C	p.Ala44Pro	p.A44P	ENST00000357731	NM_173808.2	44	Gcc/Ccc																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6230607	6230607	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761519957		P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			150	184	349	0	ENST00000252674.7:c.394C>T	p.Arg132Trp	p.R132W	ENST00000252674	NM_005934.3	132	Cgg/Tgg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286275	66286275	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs915451850		P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			31	83	329	0	ENST00000273854.3:c.1411C>G	p.Pro471Ala	p.P471A	ENST00000273854	NM_004439.5	471	Cca/Gca																																																																															
NSD1	64324	MSKCC	GRCh37	5	176673722	176673722	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			180	96	318	0	ENST00000439151.2:c.4422G>C	p.Gln1474His	p.Q1474H	ENST00000439151	NM_022455.4	1474	caG/caC																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196146	138196146	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753319492		P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			450	146	413	0	ENST00000237289.4:c.460G>A	p.Glu154Lys	p.E154K	ENST00000237289	NM_001270507.1	154	Gaa/Aaa																																																																															
POLE	5426	MSKCC	GRCh37	12	133240662	133240662	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066477-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			199	248	380	0	ENST00000320574.5:c.2634C>G	p.Phe878Leu	p.F878L	ENST00000320574	NM_006231.2	878	ttC/ttG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0067049-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			193	105	217	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0067049-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			166	59	255	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48939048	48939048	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067049-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			146	25	162	0	ENST00000267163.4:c.884del	p.Asn295IlefsTer6	p.N295Ifs*6	ENST00000267163	NM_000321.2	294	Aaa/aa																																																																															
ATRX	546	MSKCC	GRCh37	X	76890189	76890189	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067049-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			196	31	129	0	ENST00000373344.5:c.4705C>T	p.Gln1569Ter	p.Q1569*	ENST00000373344	NM_000489.3	1569	Cag/Tag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965358	25965358	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs572342520		P-0067049-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			292	28	319	0	ENST00000435504.4:c.3848G>A	p.Arg1283His	p.R1283H	ENST00000435504		1283	cGt/cAt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673794	30673794	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067049-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			311	57	257	0	ENST00000376406.3:c.3166C>T	p.Gln1056Ter	p.Q1056*	ENST00000376406	NM_014641.2	1056	Cag/Tag																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561538	9561539	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0067049-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			238	46	251	0	ENST00000353224.5:c.243_244delinsAT	p.Ile82Phe	p.I82F	ENST00000353224	NM_177990.2	81	tcCAtc/tcATtc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520057	106520057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067049-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			247	18	197	0	ENST00000359195.3:c.2485G>A	p.Gly829Arg	p.G829R	ENST00000359195	NM_002649.2	829	Gga/Aga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831939	72831939	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067049-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			275	50	272	0	ENST00000268489.5:c.4642A>G	p.Thr1548Ala	p.T1548A	ENST00000268489	NM_006885.3	1548	Acc/Gcc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78936301	78936301	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067049-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			273	31	265	0	ENST00000306801.3:c.3733G>C	p.Glu1245Gln	p.E1245Q	ENST00000306801	NM_020761.2	1245	Gag/Cag																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0067535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	157	242	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0067535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			467	182	389	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047888	180047888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			556	181	456	1	ENST00000261937.6:c.2287G>A	p.Val763Met	p.V763M	ENST00000261937	NM_182925.4	763	Gtg/Atg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411938	63411938	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			214	194	230	0	ENST00000330258.3:c.1229G>T	p.Trp410Leu	p.W410L	ENST00000330258	NM_152424.3	410	tGg/tTg																																																																															
ATM	472	MSKCC	GRCh37	11	108142105	108142105	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs730881388		P-0067535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			333	92	346	0	ENST00000278616.4:c.3049C>T	p.Gln1017Ter	p.Q1017*	ENST00000278616	NM_000051.3	1017	Cag/Tag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56152551	56152551	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0067535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			499	95	332	0	ENST00000399503.3:c.607G>T	p.Glu203Ter	p.E203*	ENST00000399503	NM_005921.1	203	Gaa/Taa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445050	89445050	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			501	203	364	0	ENST00000336596.2:c.1370G>A	p.Trp457Ter	p.W457*	ENST00000336596	NM_005233.5	457	tGg/tAg																																																																															
ATM	472	MSKCC	GRCh37	11	108114708	108114708	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0067535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			290	94	227	0	ENST00000278616.4:c.525T>A	p.Tyr175Ter	p.Y175*	ENST00000278616	NM_000051.3	175	taT/taA																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891154	101891154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			259	200	274	0	ENST00000374994.4:c.115C>A	p.His39Asn	p.H39N	ENST00000374994	NM_004612.2	39	Cac/Aac																																																																															
TET2	54790	MSKCC	GRCh37	4	106155499	106155499	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	211	389	0	ENST00000380013.4:c.400G>T	p.Gly134Cys	p.G134C	ENST00000380013	NM_001127208.2	134	Ggt/Tgt																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858185	27858185	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			867	62	412	0	ENST00000359303.2:c.386G>T	p.Arg129Leu	p.R129L	ENST00000359303	NM_003535.2	129	cGt/cTt																																																																															
CIC	23152	MSKCC	GRCh37	19	42795322	42795322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			521	377	384	0	ENST00000575354.2:c.2402G>T	p.Gly801Val	p.G801V	ENST00000575354	NM_015125.3	801	gGc/gTc																																																																															
PGR	5241	MSKCC	GRCh37	11	100999421	100999421	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			547	173	451	0	ENST00000325455.5:c.381C>G	p.Ser127Arg	p.S127R	ENST00000325455	NM_001202474.3	127	agC/agG																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246091307	246091307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	194	289	0	ENST00000388985.4:c.628C>T	p.Pro210Ser	p.P210S	ENST00000388985		210	Ccc/Tcc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129076	152129076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			468	141	368	0	ENST00000206249.3:c.29C>A	p.Ser10Tyr	p.S10Y	ENST00000206249	NM_000125.3	10	tCt/tAt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068174-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			629	137	352	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519930		P-0068174-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			436	90	266	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115977	8115999	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	CATGGGTTAGAGCCCTGCTCGAT	CATGGGTTAGAGCCCTGCTCGAT	-			P-0068174-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			630	143	304	0	ENST00000346208.3:c.1323_*13del		p.*441*	ENST00000346208		441																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5212166	5212166	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775731386		P-0068660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	48	569	0	ENST00000357368.4:c.4865C>T	p.Thr1622Met	p.T1622M	ENST00000357368	NM_002850.3	1622	aCg/aTg																																																																															
ATM	472	MSKCC	GRCh37	11	108123629	108123629	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148191382		P-0068660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	40	280	0	ENST00000278616.4:c.1888G>A	p.Val630Met	p.V630M	ENST00000278616	NM_000051.3	630	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0068660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	193	319	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579365	7579366	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CG	CG	-			P-0068660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	164	538	0	ENST00000269305.4:c.321_322del	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taCGgt/tagt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971185	21971193	+	inframe_deletion	In_Frame_Del	DEL	CGGGCGCTG	CGGGCGCTG	-			P-0068660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	69	492	0	ENST00000304494.5:c.165_173del	p.Ser56_Arg58del	p.S56_R58del	ENST00000304494	NM_000077.4	55	ggCAGCGCCCGa/gga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	48	446	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16265348	16265348	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746234410		P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	44	411	0	ENST00000375759.3:c.10840G>A	p.Val3614Ile	p.V3614I	ENST00000375759	NM_015001.2	3614	Gtt/Att																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444275	50444275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	38	386	0	ENST00000331340.3:c.205C>T	p.Arg69Cys	p.R69C	ENST00000331340	NM_006060.4	69	Cgt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762108866		P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	40	466	2	ENST00000268489.5:c.10215dup	p.Gly3406ArgfsTer25	p.G3406Rfs*25	ENST00000268489	NM_006885.3	3405	-/C																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs771001164		P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	34	405	0	ENST00000307078.5:c.1214_1215del	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346157	89346158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	28	544	0	ENST00000301030.4:c.6792dup	p.Ala2265ArgfsTer8	p.A2265Rfs*8	ENST00000301030	NM_001256183.1	2264	-/C																																																																															
ERG	2078	MSKCC	GRCh37	21	39755518	39755518	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760527652		P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			765	53	524	0	ENST00000288319.7:c.1247C>T	p.Pro416Leu	p.P416L	ENST00000288319	NM_182918.3	416	cCg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			844	47	596	0	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731468	47731468	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1284528511		P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	30	431	0	ENST00000449228.1:c.324del	p.Phe109SerfsTer120	p.F109Sfs*120	ENST00000449228	NM_001127240.2	108	ggG/gg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900066	151900066	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	36	339	0	ENST00000262189.6:c.4045C>T	p.Arg1349Ter	p.R1349*	ENST00000262189	NM_170606.2	1349	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710518	114710518	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	44	374	0	ENST00000543371.1:c.3G>A	p.Met1?	p.M1?	ENST00000543371	NM_001198531.1	1	atG/atA																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743757	46743757	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774695182		P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	46	492	0	ENST00000371975.4:c.2047C>T	p.Arg683Cys	p.R683C	ENST00000371975	NM_003579.3	683	Cgt/Tgt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856077	111856077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	40	458	0	ENST00000341259.2:c.128G>A	p.Arg43His	p.R43H	ENST00000341259	NM_005475.2	43	cGc/cAc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797846	45797846	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138089183		P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			706	54	510	0	ENST00000372115.3:c.883C>T	p.Arg295Cys	p.R295C	ENST00000372115	NM_001048171.1	295	Cgc/Tgc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085839	16085839	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372079635		P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	52	450	0	ENST00000281043.3:c.1015G>A	p.Val339Met	p.V339M	ENST00000281043	NM_005378.4	339	Gtg/Atg																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872935	136872935	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1289033947		P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	44	539	0	ENST00000241393.3:c.563G>A	p.Arg188His	p.R188H	ENST00000241393	NM_003467.2	188	cGc/cAc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4101033	4101033	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369714097		P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	24	304	0	ENST00000262948.5:c.689C>T	p.Thr230Met	p.T230M	ENST00000262948	NM_030662.3	230	aCg/aTg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21336681	21336681	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1366986114		P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	36	483	2	ENST00000215739.8:c.27del	p.Gln10ArgfsTer15	p.Q10Rfs*15	ENST00000215739	NM_006767.3	7	acG/ac																																																																															
APC	324	MSKCC	GRCh37	5	112173857	112173857	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs566005215		P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	37	404	0	ENST00000257430.4:c.2566C>T	p.Arg856Cys	p.R856C	ENST00000257430	NM_000038.5	856	Cgc/Tgc																																																																															
ABL1	25	MSKCC	GRCh37	9	133750392	133750392	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	46	390	0	ENST00000318560.5:c.1223C>A	p.Pro408His	p.P408H	ENST00000318560	NM_005157.4	408	cCc/cAc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639918	3639918	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771835799		P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	32	468	0	ENST00000294008.3:c.3721C>T	p.Arg1241Cys	p.R1241C	ENST00000294008	NM_032444.2	1241	Cgt/Tgt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865693	57865693	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs578089149		P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	40	450	0	ENST00000228682.2:c.3170A>G	p.Gln1057Arg	p.Q1057R	ENST00000228682	NM_005269.2	1057	cAg/cGg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149436932	149436934	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	33	468	0	ENST00000286301.3:c.2235_2237del	p.Glu745del	p.E745del	ENST00000286301	NM_005211.3	745	gaGGAt/gat																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176050364	176050364	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	41	358	0	ENST00000367669.3:c.1201C>T	p.Arg401Ter	p.R401*	ENST00000367669	NM_022457.5	401	Cga/Tga																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940990	71940990	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			728	50	537	0	ENST00000298229.2:c.866T>C	p.Met289Thr	p.M289T	ENST00000298229	NM_001567.3	289	aTg/aCg																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110214	3110216	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-	rs767445318		P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	35	439	0	ENST00000078429.4:c.210_212del	p.Glu70del	p.E70del	ENST00000078429	NM_002067.2	68	tcGGAg/tcg																																																																															
APC	324	MSKCC	GRCh37	5	112173606	112173607	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	36	391	0	ENST00000257430.4:c.2319dup	p.Asp774Ter	p.D774*	ENST00000257430	NM_000038.5	772	act/acTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830084	72830084	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	44	411	0	ENST00000268489.5:c.6497T>C	p.Ile2166Thr	p.I2166T	ENST00000268489	NM_006885.3	2166	aTt/aCt																																																																															
ERF	2077	MSKCC	GRCh37	19	42753212	42753212	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376130330		P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			807	59	591	0	ENST00000222329.4:c.1052C>T	p.Pro351Leu	p.P351L	ENST00000222329	NM_006494.2	351	cCg/cTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646205	3646205	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200755122		P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	40	394	0	ENST00000294008.3:c.1873G>A	p.Ala625Thr	p.A625T	ENST00000294008	NM_032444.2	625	Gcc/Acc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94170392	94170392	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069305-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	26	197	0	ENST00000323929.3:c.1877C>A	p.Ser626Tyr	p.S626Y	ENST00000323929	NM_005591.3	626	tCt/tAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520006		P-0071324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	141	320	0	ENST00000269305.4:c.821T>G	p.Val274Gly	p.V274G	ENST00000269305	NM_001126112.2	274	gTt/gGt																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134954	41134954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	113	317	0	ENST00000379561.5:c.674G>A	p.Arg225His	p.R225H	ENST00000379561	NM_002015.3	225	cGt/cAt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324595	31324607	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCTCCTCTCTC	CGGCTCCTCTCTC	-			P-0071324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	51	221	1	ENST00000412585.2:c.201_213del	p.Arg68GlyfsTer5	p.R68Gfs*5	ENST00000412585	NM_005514.6	67	ccGAGAGAGGAGCCG/cc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114901065	114901065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	42	361	0	ENST00000543371.1:c.675C>A	p.Asp225Glu	p.D225E	ENST00000543371	NM_001198531.1	225	gaC/gaA																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0072580-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			327	43	242	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044839	47044839	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0072580-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			819	128	584	0	ENST00000329236.7:c.1933-2A>G		p.X645_splice	ENST00000329236	NM_001204466.1	645																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0072580-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			279	58	226	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922148	39922149	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0072580-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			738	56	458	1	ENST00000378444.4:c.4023_4024delinsAA	p.Cys1341_Gln1342delinsTer	p.C1341_Q1342delins*	ENST00000378444	NM_001123385.1	1341	tgCCag/tgAAag																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424006	47424006	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072580-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			658	62	431	0	ENST00000404338.3:c.2074C>A	p.His692Asn	p.H692N	ENST00000404338	NM_004491.4	692	Cat/Aat																																																																															
REST	5978	MSKCC	GRCh37	4	57797109	57797109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072580-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			889	54	661	0	ENST00000309042.7:c.2085G>T	p.Gln695His	p.Q695H	ENST00000309042	NM_005612.4	695	caG/caT																																																																															
BCOR	54880	MSKCC	GRCh37	X	39911534	39911534	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072580-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			443	54	399	0	ENST00000378444.4:c.5096G>C	p.Arg1699Pro	p.R1699P	ENST00000378444	NM_001123385.1	1699	cGg/cCg																																																																															
ALB	213	MSKCC	GRCh37	4	74282000	74282000	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072580-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			170	21	154	0	ENST00000295897.4:c.1219G>C	p.Glu407Gln	p.E407Q	ENST00000295897	NM_000477.5	407	Gag/Cag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434398	110434398	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072580-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			581	75	390	0	ENST00000375856.3:c.4003A>T	p.Ile1335Phe	p.I1335F	ENST00000375856	NM_003749.2	1335	Atc/Ttc																																																																															
POLE	5426	MSKCC	GRCh37	12	133225902	133225902	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072580-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			609	46	414	1	ENST00000320574.5:c.3995A>T	p.Gln1332Leu	p.Q1332L	ENST00000320574	NM_006231.2	1332	cAg/cTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18491358	18491358	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0072580-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			186	30	157	1	ENST00000266497.5:c.1273-2A>G		p.X425_splice	ENST00000266497		425																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5211690	5211690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072580-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			773	53	413	0	ENST00000357368.4:c.5145G>T	p.Met1715Ile	p.M1715I	ENST00000357368	NM_002850.3	1715	atG/atT																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225577	26225578	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0072580-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			980	133	601	0	ENST00000360408.1:c.195_196delinsAA	p.Leu66Met	p.L66M	ENST00000360408	NM_003532.2	65	aaGCtg/aaAAtg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026116	71026116	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057524152		P-0072787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	29	304	0	ENST00000318789.4:c.1506C>G	p.Phe502Leu	p.F502L	ENST00000318789	NM_032682.5	502	ttC/ttG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0072888-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			197	110	294	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072888-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	156	364	0	ENST00000346208.3:c.1275dup	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157517413	157517413	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370064281		P-0072888-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			251	90	223	1	ENST00000346085.5:c.3977G>A	p.Arg1326His	p.R1326H	ENST00000346085	NM_020732.3	1326	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0073258-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			128	27	243	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0073258-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			140	39	393	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604701	48604701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073258-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			149	37	469	0	ENST00000342988.3:c.1523G>A	p.Gly508Asp	p.G508D	ENST00000342988	NM_005359.5	508	gGc/gAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519852		P-0073258-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	55	457	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713375	30713375	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073258-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			211	60	480	0	ENST00000359013.4:c.775A>G	p.Asn259Asp	p.N259D	ENST00000359013	NM_001024847.2	259	Aac/Gac																																																																															
NBN	4683	MSKCC	GRCh37	8	90982621	90982621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0073258-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			215	40	331	0	ENST00000265433.3:c.867G>A	p.Trp289Ter	p.W289*	ENST00000265433	NM_002485.4	289	tgG/tgA																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971118	21971119	+	frameshift_variant	Frame_Shift_Ins	INS	TC	TC	ATT			P-0073258-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			167	35	450	0	ENST00000304494.5:c.239_240delinsAAT	p.Arg80GlnfsTer40	p.R80Qfs*40	ENST00000304494	NM_000077.4	80	cGA/cAAT																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44935965	44935966	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073258-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			40	28	114	0	ENST00000377967.4:c.2727dup	p.Asn910Ter	p.N910*	ENST00000377967	NM_021140.2	909	tct/tcTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0073323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	54	371	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101904885	101904885	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0073323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	42	312	0	ENST00000374994.4:c.873C>G	p.Tyr291Ter	p.Y291*	ENST00000374994	NM_004612.2	291	taC/taG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0073323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	31	261	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TET1	80312	MSKCC	GRCh37	10	70426970	70426970	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	73	337	0	ENST00000373644.4:c.4630T>A	p.Tyr1544Asn	p.Y1544N	ENST00000373644	NM_030625.2	1544	Tac/Aac																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123239503	123239503	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			748	53	478	0	ENST00000358487.5:c.2334G>T	p.Gln778His	p.Q778H	ENST00000358487	NM_000141.4	778	caG/caT																																																																															
SDHC	6391	MSKCC	GRCh37	1	161326487	161326487	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073987-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			335	44	252	0	ENST00000367975.2:c.262T>C	p.Ser88Pro	p.S88P	ENST00000367975	NM_003001.3	88	Tcg/Ccg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0073987-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			346	114	446	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652093	36652099	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTGCC	GCCTGCC	-			P-0073987-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			457	127	525	0	ENST00000244741.5:c.215_221del	p.Gly72AlafsTer74	p.G72Afs*74	ENST00000244741	NM_000389.4	72	gGCCTGCCc/gc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198281502	198281502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	32	391	0	ENST00000335508.6:c.629C>T	p.Ala210Val	p.A210V	ENST00000335508	NM_012433.2	210	gCc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0074146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	14	261	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
POT1	25913	MSKCC	GRCh37	7	124475424	124475424	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs769757327		P-0074146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	32	317	0	ENST00000357628.3:c.1414A>T	p.Ser472Cys	p.S472C	ENST00000357628	NM_015450.2	472	Agt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578215	7578220	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTGT	AAGTGT	GC			P-0074305-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			66	19	490	0	ENST00000269305.4:c.629_634delinsGC	p.Asn210SerfsTer36	p.N210Sfs*36	ENST00000269305	NM_001126112.2	210	aACACTTtt/aGCtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0074496-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			428	33	291	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0074496-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			366	26	206	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971051	21971051	+	synonymous_variant	Silent	SNP	G	G	T			P-0074496-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			434	26	343	0	ENST00000304494.5:c.307C>A	p.Arg103=	p.R103=	ENST00000304494	NM_000077.4	103	Cgg/Agg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971058	21971059	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0074496-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			423	25	343	0	ENST00000304494.5:c.299_300del	p.Ala100GlyfsTer19	p.A100Gfs*19	ENST00000304494	NM_000077.4	100	gCC/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0074782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	159	521	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468452	89468452	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	149	467	0	ENST00000336596.2:c.1986G>T	p.Lys662Asn	p.K662N	ENST00000336596	NM_005233.5	662	aaG/aaT																																																																															
RB1	5925	MSKCC	GRCh37	13	49037936	49037968	+	inframe_deletion	In_Frame_Del	DEL	ACAGCATACAAGGATCTTCCTCATGCTGTTCAG	ACAGCATACAAGGATCTTCCTCATGCTGTTCAG	-			P-0074782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	67	318	0	ENST00000267163.4:c.2176_2208del	p.Thr726_Gln736del	p.T726_Q736del	ENST00000267163	NM_000321.2	726	ACAGCATACAAGGATCTTCCTCATGCTGTTCAG/-																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257393	19257393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1144	118	565	0	ENST00000162023.5:c.740G>T	p.Ser247Ile	p.S247I	ENST00000162023		247	aGc/aTc																																																																															
ERG	2078	MSKCC	GRCh37	21	39755399	39755399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	160	590	0	ENST00000288319.7:c.1366C>T	p.Pro456Ser	p.P456S	ENST00000288319	NM_182918.3	456	Cca/Tca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255380	16255380	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368635957		P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			507	130	407	0	ENST00000375759.3:c.2645G>A	p.Arg882Gln	p.R882Q	ENST00000375759	NM_015001.2	882	cGa/cAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023715	27023716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			265	74	378	1	ENST00000324856.7:c.827dup	p.Gly277ArgfsTer123	p.G277Rfs*123	ENST00000324856	NM_006015.4	274	atg/atGg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343660	118343660	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			484	117	434	0	ENST00000534358.1:c.1790del	p.Leu597CysfsTer26	p.L597Cfs*26	ENST00000534358	NM_005933.3	596	Ttt/tt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741882	17741882	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773919451		P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			243	25	277	0	ENST00000250003.3:c.553C>T	p.Pro185Ser	p.P185S	ENST00000250003	NM_002478.4	185	Ccc/Tcc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936201	71936201	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			361	34	421	0	ENST00000298229.2:c.173T>C	p.Leu58Pro	p.L58P	ENST00000298229	NM_001567.3	58	cTc/cCc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			346	134	406	2	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			258	104	213	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			431	98	437	4	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	461436	461436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			410	32	208	0	ENST00000399788.2:c.1084A>G	p.Thr362Ala	p.T362A	ENST00000399788	NM_001042603.1	362	Aca/Gca																																																																															
KDM5A	5927	MSKCC	GRCh37	12	464374	464374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1225548195		P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			349	161	305	0	ENST00000399788.2:c.820G>A	p.Ala274Thr	p.A274T	ENST00000399788	NM_001042603.1	274	Gca/Aca																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134170	41134170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			362	108	392	0	ENST00000379561.5:c.1458G>T	p.Gln486His	p.Q486H	ENST00000379561	NM_002015.3	486	caG/caT																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799218	88799219	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			296	109	366	0	ENST00000360948.2:c.166dup	p.Leu56ProfsTer82	p.L56Pfs*82	ENST00000360948	NM_001012338.2	56	ctc/cCtc																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	142	385	7	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647028	23647028	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			465	119	322	0	ENST00000261584.4:c.839del	p.Asn280ThrfsTer8	p.N280Tfs*8	ENST00000261584	NM_024675.3	280	aAc/ac																																																																															
CDH1	999	MSKCC	GRCh37	16	68842626	68842627	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			425	164	408	0	ENST00000261769.5:c.566dup	p.Tyr190LeufsTer9	p.Y190Lfs*9	ENST00000261769	NM_004360.3	188	gtt/gTtt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	134	506	1	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348566	89348568	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-	rs753054998		P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			449	149	418	0	ENST00000301030.4:c.4382_4384del	p.Lys1461del	p.K1461del	ENST00000301030	NM_001256183.1	1461	aAGAga/aga																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119710	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	21	406	0	ENST00000285071.4:c.1284_1285del	p.His429ArgfsTer26	p.H429Rfs*26	ENST00000285071	NM_144997.5	428	ccCCac/ccac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			524	60	493	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120506	70120507	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			427	184	448	0	ENST00000245479.2:c.1513_1514del	p.Gln505AlafsTer72	p.Q505Afs*72	ENST00000245479	NM_000346.3	503	tAC/t																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603007	48603007	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			383	29	205	0	ENST00000342988.3:c.1309-1G>T		p.X437_splice	ENST00000342988	NM_005359.5	437																																																																																
UPF1	5976	MSKCC	GRCh37	19	18943157	18943157	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			239	40	218	0	ENST00000262803.5:c.144del	p.Gly49AlafsTer45	p.G49Afs*45	ENST00000262803	NM_002911.3	47	Ccc/cc																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793252	33793253	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			232	99	305	0	ENST00000498907.2:c.68dup	p.His24AlafsTer84	p.H24Afs*84	ENST00000498907	NM_004364.3	23	ccg/ccCg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	123	490	4	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
CUL3	8452	MSKCC	GRCh37	2	225339072	225339072	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			338	147	230	0	ENST00000264414.4:c.2197C>T	p.Arg733Ter	p.R733*	ENST00000264414	NM_003590.4	733	Cga/Tga																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			405	181	402	3	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																															
ATR	545	MSKCC	GRCh37	3	142231113	142231113	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			416	96	298	0	ENST00000350721.4:c.4841T>C	p.Val1614Ala	p.V1614A	ENST00000350721	NM_001184.3	1614	gTa/gCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919194	178919194	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			455	30	285	0	ENST00000263967.3:c.685del	p.Thr229LeufsTer11	p.T229Lfs*11	ENST00000263967	NM_006218.2	227	Aaa/aa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	275	356	10	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			208	314	311	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			437	187	407	0	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																															
TET2	54790	MSKCC	GRCh37	4	106197444	106197444	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1316795626		P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			342	119	369	0	ENST00000380013.4:c.5777G>A	p.Arg1926His	p.R1926H	ENST00000380013	NM_001127208.2	1926	cGt/cAt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1977066	1977066	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	135	358	0	ENST00000382895.3:c.3565del	p.Thr1189ArgfsTer140	p.T1189Rfs*140	ENST00000382895	NM_133330.2	1187	gAa/ga																																																																															
APC	324	MSKCC	GRCh37	5	112164604	112164604	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			422	165	267	0	ENST00000257430.4:c.1682del	p.Lys561ArgfsTer9	p.K561Rfs*9	ENST00000257430	NM_000038.5	560	Aaa/aa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707805	176707805	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			352	148	319	0	ENST00000439151.2:c.5862G>T	p.Trp1954Cys	p.W1954C	ENST00000439151	NM_022455.4	1954	tgG/tgT																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	191	338	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323353	31323354	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	174	387	0	ENST00000412585.2:c.635_636del	p.His212ArgfsTer8	p.H212Rfs*8	ENST00000412585	NM_005514.6	212	cAC/c																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520004	106520004	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			293	151	280	0	ENST00000359195.3:c.2432T>C	p.Leu811Pro	p.L811P	ENST00000359195	NM_002649.2	811	cTa/cCa																																																																															
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			430	205	348	4	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864937	117864937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			459	34	237	0	ENST00000297338.2:c.1172G>A	p.Arg391His	p.R391H	ENST00000297338	NM_006265.2	391	cGc/cAc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841231	15841236	+	inframe_deletion	In_Frame_Del	DEL	AGCCGG	AGCCGG	-	rs768273733		P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			530	63	467	1	ENST00000307771.7:c.1338_1343del	p.Ser447_Arg448del	p.S447_R448del	ENST00000307771	NM_005089.3	439	AGCCGG/-																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969417	44969417	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370298215		P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			348	162	302	0	ENST00000377967.4:c.4099G>A	p.Gly1367Arg	p.G1367R	ENST00000377967	NM_021140.2	1367	Gga/Aga																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			124	30	217	3	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024018	27024018	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	24	257	0	ENST00000324856.7:c.1124C>G	p.Ala375Gly	p.A375G	ENST00000324856	NM_006015.4	375	gCc/gGc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94211955	94211955	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs751634787		P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			384	152	242	0	ENST00000323929.3:c.490A>G	p.Ile164Val	p.I164V	ENST00000323929	NM_005591.3	164	Att/Gtt																																																																															
MSI1	4440	MSKCC	GRCh37	12	120784018	120784018	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866379338		P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			307	161	479	0	ENST00000257552.2:c.967G>A	p.Ala323Thr	p.A323T	ENST00000257552	NM_002442.3	323	Gcc/Acc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524717	103524718	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	39	322	0	ENST00000355739.4:c.2853dup	p.Lys952GlufsTer3	p.K952Efs*3	ENST00000355739	NM_000123.3	950	tgg/tGgg																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30129705	30129705	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			497	40	382	0	ENST00000263025.4:c.508T>C	p.Ser170Pro	p.S170P	ENST00000263025	NM_002746.2	170	Tcc/Ccc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347810	89347810	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			326	126	412	0	ENST00000301030.4:c.5140A>G	p.Ser1714Gly	p.S1714G	ENST00000301030	NM_001256183.1	1714	Agc/Ggc																																																																															
NF1	4763	MSKCC	GRCh37	17	29553511	29553511	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			288	148	303	0	ENST00000358273.4:c.2060T>C	p.Leu687Pro	p.L687P	ENST00000358273	NM_001042492.2	687	cTa/cCa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120072	70120073	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			252	85	384	0	ENST00000245479.2:c.1079dup	p.Gln361AlafsTer217	p.Q361Afs*217	ENST00000245479	NM_000346.3	358	-/C																																																																															
AURKB	9212	MSKCC	GRCh37	17	8111077	8111077	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs529657077		P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			410	161	356	1	ENST00000585124.1:c.130C>T	p.Arg44Cys	p.R44C	ENST00000585124	NM_004217.3	44	Cgc/Tgc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353858	15353858	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			189	110	275	0	ENST00000263377.2:c.3022A>G	p.Ile1008Val	p.I1008V	ENST00000263377	NM_058243.2	1008	Atc/Gtc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222017	2222017	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375668963		P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			349	169	424	1	ENST00000398665.3:c.2849C>T	p.Ala950Val	p.A950V	ENST00000398665	NM_032482.2	950	gCg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224397	36224397	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			503	55	577	0	ENST00000222270.7:c.6947T>C	p.Leu2316Pro	p.L2316P	ENST00000222270	NM_014727.1	2316	cTt/cCt																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866481	42866481	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1452535499		P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			607	55	388	0	ENST00000398585.3:c.151T>C	p.Tyr51His	p.Y51H	ENST00000398585	NM_001135099.1	51	Tac/Cac																																																																															
MLH1	4292	MSKCC	GRCh37	3	37090464	37090464	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs63751275		P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			178	289	267	0	ENST00000231790.2:c.2059C>T	p.Arg687Trp	p.R687W	ENST00000231790	NM_000249.3	687	Cgg/Tgg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127387	55127387	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	66	428	0	ENST00000257290.5:c.175T>C	p.Tyr59His	p.Y59H	ENST00000257290	NM_006206.4	59	Tac/Cac																																																																															
KIT	3815	MSKCC	GRCh37	4	55592169	55592169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			275	138	256	0	ENST00000288135.5:c.1493G>A	p.Gly498Asp	p.G498D	ENST00000288135	NM_000222.2	498	gGc/gAc																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239538	31239538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs281860360		P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			408	186	499	0	ENST00000376228.5:c.181G>A	p.Asp61Asn	p.D61N	ENST00000376228	NM_002117.5	61	Gac/Aac																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31322931	31322931	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			566	58	428	0	ENST00000412585.2:c.965T>G	p.Val322Gly	p.V322G	ENST00000412585	NM_005514.6	322	gTc/gGc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797705	32797705	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	108	316	0	ENST00000374899.4:c.1795+2T>A		p.X599_splice	ENST00000374899	NM_018833.2	599																																																																																
SMO	6608	MSKCC	GRCh37	7	128849133	128849133	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			383	27	340	0	ENST00000249373.3:c.1365del	p.Phe455LeufsTer40	p.F455Lfs*40	ENST00000249373	NM_005631.4	454	aTt/at																																																																															
ABL1	25	MSKCC	GRCh37	9	133730470	133730470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			146	206	239	0	ENST00000318560.5:c.536C>T	p.Ala179Val	p.A179V	ENST00000318560	NM_005157.4	179	gCt/gTt																																																																															
TEK	7010	MSKCC	GRCh37	9	27183460	27183460	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			293	130	290	0	ENST00000380036.4:c.1034T>C	p.Ile345Thr	p.I345T	ENST00000380036	NM_000459.3	345	aTa/aCa																																																																															
TEK	7010	MSKCC	GRCh37	9	27212774	27212774	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	150	375	0	ENST00000380036.4:c.2756T>C	p.Val919Ala	p.V919A	ENST00000380036	NM_000459.3	919	gTg/gCg																																																																															
XIAP	331	MSKCC	GRCh37	X	123019615	123019615	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			315	183	277	0	ENST00000355640.3:c.103A>G	p.Asn35Asp	p.N35D	ENST00000355640		35	Aat/Gat																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931646	39931646	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			326	150	314	0	ENST00000378444.4:c.2953T>C	p.Tyr985His	p.Y985H	ENST00000378444	NM_001123385.1	985	Tat/Cat																																																																															
ATRX	546	MSKCC	GRCh37	X	76939127	76939127	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			516	47	363	0	ENST00000373344.5:c.1621T>C	p.Ser541Pro	p.S541P	ENST00000373344	NM_000489.3	541	Tca/Cca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0074959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	65	357	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0074959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	42	208	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144146	11144146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	70	340	0	ENST00000344626.4:c.3727C>T	p.Arg1243Trp	p.R1243W	ENST00000344626	NM_003072.3	1243	Cgg/Tgg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101867554	101867588	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCGGCGGCGGCGCTGCTCCCGGGGGCGACGGGTGA	GCGGCGGCGGCGCTGCTCCCGGGGGCGACGGGTGA	-			P-0074959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	35	248	0	ENST00000374994.4:c.76_97+13del		p.X26_splice	ENST00000374994	NM_004612.2	26																																																																																
ATM	472	MSKCC	GRCh37	11	108218084	108218084	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0074991-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			321	15	374	0	ENST00000278616.4:c.8663T>G	p.Ile2888Arg	p.I2888R	ENST00000278616	NM_000051.3	2888	aTa/aGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0074991-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	27	296	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271151	38271151	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17182463		P-0074991-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			354	44	278	0	ENST00000425967.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000425967	NM_001174067.1	853	Cgc/Tgc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753648	42753656	+	inframe_deletion	In_Frame_Del	DEL	CGCGGGGAT	CGCGGGGAT	-			P-0074991-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			797	47	581	0	ENST00000222329.4:c.608_616del	p.Asp203_Arg205del	p.D203_R205del	ENST00000222329	NM_006494.2	203	gATCCCCGCGcc/gcc																																																																															
BTK	695	MSKCC	GRCh37	X	100613645	100613645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074991-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			491	56	401	0	ENST00000308731.7:c.934G>A	p.Ala312Thr	p.A312T	ENST00000308731	NM_000061.2	312	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0074996-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			456	108	537	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
CD276	80381	MSKCC	GRCh37	15	73996204	73996206	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0074996-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			266	19	341	0	ENST00000318443.5:c.940_942del	p.Phe314del	p.F314del	ENST00000318443	NM_001024736.1	313	cTCTtc/ctc																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502405	186502405	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074996-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			508	91	451	0	ENST00000323963.5:c.128C>G	p.Ser43Cys	p.S43C	ENST00000323963		43	tCt/tGt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32171982	32171982	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074996-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	50	520	0	ENST00000375023.3:c.3050C>G	p.Pro1017Arg	p.P1017R	ENST00000375023	NM_004557.3	1017	cCc/cGc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145743153	145743153	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1009265867		P-0074996-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			203	26	350	0	ENST00000428558.2:c.16G>A	p.Asp6Asn	p.D6N	ENST00000428558	NM_004260.3	6	Gac/Aac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0075086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			246	68	344	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577529	7577529	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			255	57	269	0	ENST00000269305.4:c.752T>A	p.Ile251Asn	p.I251N	ENST00000269305	NM_001126112.2	251	aTc/aAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187516857	187516857	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769928509		P-0075086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			332	32	324	0	ENST00000441802.2:c.13124C>T	p.Ser4375Leu	p.S4375L	ENST00000441802	NM_005245.3	4375	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			212	95	201	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557753	187557753	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			390	57	399	0	ENST00000441802.2:c.3958T>C	p.Tyr1320His	p.Y1320H	ENST00000441802	NM_005245.3	1320	Tat/Cat																																																																															
TERT	7015	MSKCC	GRCh37	5	1296431	1296431	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0075086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			138	17	127	0				ENST00000310581	NM_198253.2																																																																																	
CSDE1	7812	MSKCC	GRCh37	1	115267850	115267850	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075086-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			283	50	251	0	ENST00000438362.2:c.1883C>G	p.Thr628Arg	p.T628R	ENST00000438362	NM_001242891.1	628	aCa/aGa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0075465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	54	301	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7576853	7576853	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs11575996		P-0075465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			320	73	434	0	ENST00000269305.4:c.993G>T	p.Gln331His	p.Q331H	ENST00000269305	NM_001126112.2	331	caG/caT																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683722	162683722	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			325	23	345	0	ENST00000366898.1:c.247A>C	p.Thr83Pro	p.T83P	ENST00000366898	NM_004562.2	83	Act/Cct																																																																															
TERT	7015	MSKCC	GRCh37	5	1293449	1293449	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			379	25	302	0	ENST00000310581.5:c.1552G>C	p.Ala518Pro	p.A518P	ENST00000310581	NM_198253.2	518	Gct/Cct																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777943	3777943	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745770513		P-0075465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			455	34	473	0	ENST00000262367.5:c.7105C>T	p.Pro2369Ser	p.P2369S	ENST00000262367	NM_004380.2	2369	Ccc/Tcc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389246	8389246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			199	24	264	0	ENST00000356435.5:c.4372G>A	p.Glu1458Lys	p.E1458K	ENST00000356435		1458	Gaa/Aaa																																																																															
BLM	641	MSKCC	GRCh37	15	91295155	91295155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			234	15	301	0	ENST00000355112.3:c.938C>A	p.Ser313Tyr	p.S313Y	ENST00000355112	NM_000057.2	313	tCt/tAt																																																																															
TET2	54790	MSKCC	GRCh37	4	106193849	106193850	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs777908833		P-0075481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	55	370	0	ENST00000380013.4:c.4317dup	p.Arg1440ThrfsTer38	p.R1440Tfs*38	ENST00000380013	NM_001127208.2	1437	-/A																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510158	187510158	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs932754737		P-0075481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	55	449	0	ENST00000441802.2:c.13355C>T	p.Pro4452Leu	p.P4452L	ENST00000441802	NM_005245.3	4452	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577148	7577148	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1060501194		P-0075481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	50	423	0	ENST00000269305.4:c.790del	p.Leu264TyrfsTer81	p.L264Yfs*81	ENST00000269305	NM_001126112.2	264	Cta/ta																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123325146	123325146	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199575491		P-0075481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1270	126	397	0	ENST00000358487.5:c.182G>A	p.Arg61His	p.R61H	ENST00000358487	NM_000141.4	61	cGc/cAc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	71873200	71873200	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	49	429	0	ENST00000357731.5:c.994T>C	p.Cys332Arg	p.C332R	ENST00000357731	NM_173808.2	332	Tgc/Cgc																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26196866	26197357	+	coding_sequence_variant,3_prime_UTR_variant	In_Frame_Del	DEL	GAACTCCCCAATTATAATAAAGCTTTTTGCACCAATTCCGTGAGGGGAGGGGGAACGGATAGAGGCAAGAATGCTTACTTACCTTGAGTGAACAGAGGTTCCAGTTTACGGACAGCAACAGTAAACAGCAACTTTTATAGAAAAGGTGGTTGGCTCTGAAAAGAGCCTTTGGGTTTTGGTTAGCACACATTCACAAGACAATTTACGCCCTCTCCCCACGAATGCGGCGAGCAAGCTGGATGTCCTTGGGCATGATAGTCACTCGCTTGGCGTGAATGGCGCATAGGTTGGTGTCCTCAAACAGCCCCACCAGGTAGGCCTCGCAGGCCTCCTGCAGCGCCATCACCGCCGAGCTCTGAAAACGCAGATCAGTCTTGAAGTCCTGCGCGATCTCACGGACTAGACGCTGGAATGGCAGTTTGCGAATCAGCAGCTCGGTCGACTTCTGGTAGCGGCGGATCTCGCGCAGAGCCACCGTGCCGGGCCGGTAAC	GAACTCCCCAATTATAATAAAGCTTTTTGCACCAATTCCGTGAGGGGAGGGGGAACGGATAGAGGCAAGAATGCTTACTTACCTTGAGTGAACAGAGGTTCCAGTTTACGGACAGCAACAGTAAACAGCAACTTTTATAGAAAAGGTGGTTGGCTCTGAAAAGAGCCTTTGGGTTTTGGTTAGCACACATTCACAAGACAATTTACGCCCTCTCCCCACGAATGCGGCGAGCAAGCTGGATGTCCTTGGGCATGATAGTCACTCGCTTGGCGTGAATGGCGCATAGGTTGGTGTCCTCAAACAGCCCCACCAGGTAGGCCTCGCAGGCCTCCTGCAGCGCCATCACCGCCGAGCTCTGAAAACGCAGATCAGTCTTGAAGTCCTGCGCGATCTCACGGACTAGACGCTGGAATGGCAGTTTGCGAATCAGCAGCTCGGTCGACTTCTGGTAGCGGCGGATCTCGCGCAGAGCCACCGTGCCGGGCCGGTAAC	-			P-0075481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			50	29	72	0				ENST00000356476		41		1-Jan																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0075483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	47	256	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDH1	999	MSKCC	GRCh37	16	68867329	68867329	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	154	473	0	ENST00000261769.5:c.2576A>G	p.Tyr859Cys	p.Y859C	ENST00000261769	NM_004360.3	859	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0075483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	64	406	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	21	305	1	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0075483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	10	459	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0075483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	117	475	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0075555-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			501	55	480	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971026	21971026	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075555-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			307	50	411	0	ENST00000304494.5:c.332del	p.Gly111AlafsTer35	p.G111Afs*35	ENST00000304494	NM_000077.4	111	gGc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075555-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			194	18	307	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ATR	545	MSKCC	GRCh37	3	142281918	142281918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774885093		P-0075555-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			230	32	424	0	ENST00000350721.4:c.326G>A	p.Arg109Gln	p.R109Q	ENST00000350721	NM_001184.3	109	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0075624-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			396	194	359	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120431	70120431	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075624-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			640	132	536	0	ENST00000245479.2:c.1437del	p.Ile480SerfsTer43	p.I480Sfs*43	ENST00000245479	NM_000346.3	478	aCc/ac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573563	48573564	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075624-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	74	433	0	ENST00000342988.3:c.153dup	p.Asp52ArgfsTer2	p.D52Rfs*2	ENST00000342988	NM_005359.5	49	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7578392	7578401	+	frameshift_variant	Frame_Shift_Del	DEL	CATGGTGGGG	CATGGTGGGG	-			P-0075624-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			463	124	547	0	ENST00000269305.4:c.529_538del	p.Pro177SerfsTer67	p.P177Sfs*67	ENST00000269305	NM_001126112.2	177	CCCCACCATGag/ag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0075671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	13	267	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512313	149512313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1442264858		P-0075671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	40	344	0	ENST00000261799.4:c.1127G>A	p.Arg376Gln	p.R376Q	ENST00000261799	NM_002609.3	376	cGg/cAg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589591	67589592	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATA			P-0075671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	25	169	0	ENST00000274335.5:c.1356_1358dup	p.Asn453dup	p.N453dup	ENST00000274335		453	tat/tATAat																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435349	56435349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	46	398	0	ENST00000407977.2:c.1788G>T	p.Gln596His	p.Q596H	ENST00000407977		596	caG/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0075734-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			198	164	451	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851558	134851558	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs770155473		P-0075734-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			447	56	359	0	ENST00000398015.3:c.964G>A	p.Val322Ile	p.V322I	ENST00000398015	NM_004441.4	322	Gtc/Atc																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22162098	22162098	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075734-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			237	283	376	0	ENST00000215832.6:c.157A>G	p.Ile53Val	p.I53V	ENST00000215832	NM_002745.4	53	Atc/Gtc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974762	21974762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075734-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			328	175	443	0	ENST00000304494.5:c.65G>C	p.Arg22Pro	p.R22P	ENST00000304494	NM_000077.4	22	cGg/cCg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467423	66467423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1186376255		P-0075734-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			369	187	469	0	ENST00000273854.3:c.846G>A	p.Trp282Ter	p.W282*	ENST00000273854	NM_004439.5	282	tgG/tgA																																																																															
ESR1	2099	MSKCC	GRCh37	6	152201825	152201825	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075734-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	152	352	0	ENST00000206249.3:c.679T>C	p.Cys227Arg	p.C227R	ENST00000206249	NM_000125.3	227	Tgc/Cgc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295945	1295945	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0075734-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			543	81	549	0				ENST00000310581	NM_198253.2																																																																																	
NSD1	64324	MSKCC	GRCh37	5	176684110	176684110	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075734-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			405	161	379	0	ENST00000439151.2:c.4924A>G	p.Thr1642Ala	p.T1642A	ENST00000439151	NM_022455.4	1642	Acc/Gcc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174892	11174892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075734-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			181	62	266	0	ENST00000361445.4:c.7142G>T	p.Arg2381Ile	p.R2381I	ENST00000361445	NM_004958.3	2381	aGa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519975		P-0075735-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			453	133	514	0	ENST00000269305.4:c.403T>C	p.Cys135Arg	p.C135R	ENST00000269305	NM_001126112.2	135	Tgc/Cgc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913386		P-0075735-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			426	108	493	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170135	32170135	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs542331250		P-0075735-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			532	47	489	0	ENST00000375023.3:c.3473G>A	p.Arg1158Gln	p.R1158Q	ENST00000375023	NM_004557.3	1158	cGa/cAa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436025	56436025	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs929720505		P-0075735-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			802	85	539	0	ENST00000407977.2:c.1112G>A	p.Arg371Gln	p.R371Q	ENST00000407977		371	cGa/cAa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39224564	39224564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0075735-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			152	15	264	0	ENST00000402219.2:c.2794A>G	p.Ile932Val	p.I932V	ENST00000402219	NM_005633.3	932	Att/Gtt																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45795084	45795084	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs140118273		P-0075735-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			420	145	493	0	ENST00000372115.3:c.1502C>G	p.Ser501Cys	p.S501C	ENST00000372115	NM_001048171.1	501	tCt/tGt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16264500	16264500	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1023242507		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	65	303	0	ENST00000375759.3:c.10703C>T	p.Thr3568Met	p.T3568M	ENST00000375759	NM_015001.2	3568	aCg/aTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087504	27087504	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770764901		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	9	399	0	ENST00000324856.7:c.2078G>A	p.Arg693Gln	p.R693Q	ENST00000324856	NM_006015.4	693	cGa/cAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs879255270		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	87	414	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599271	28599271	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1457528646		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	25	403	0	ENST00000253063.3:c.722del	p.Pro241GlnfsTer6	p.P241Qfs*6	ENST00000253063	NM_031459.4	239	agC/ag																																																																															
MPL	4352	MSKCC	GRCh37	1	43804268	43804268	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs763144679		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	70	421	0	ENST00000372470.3:c.268C>T	p.Arg90Ter	p.R90*	ENST00000372470	NM_005373.2	90	Cga/Tga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	30	388	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	46	303	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	19	199	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			53	13	104	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118352594	118352594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376303494		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	77	386	0	ENST00000534358.1:c.3799G>A	p.Val1267Ile	p.V1267I	ENST00000534358	NM_005933.3	1267	Gtc/Atc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125523663	125523663	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	20	247	0	ENST00000428830.2:c.1256G>T	p.Arg419Met	p.R419M	ENST00000428830	NM_001114121.2	419	aGg/aTg																																																																															
SETD8	387893	MSKCC	GRCh37	12	123879626	123879626	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376869233		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	35	240	0	ENST00000330479.4:c.322G>A	p.Ala108Thr	p.A108T	ENST00000330479	NM_020382.3	108	Gcc/Acc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416416	49416416	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs398123734		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	75	366	0	ENST00000301067.7:c.16295G>A	p.Arg5432Gln	p.R5432Q	ENST00000301067	NM_003482.3	5432	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425086	49425086	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761717148		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	52	454	0	ENST00000301067.7:c.13402C>T	p.Arg4468Trp	p.R4468W	ENST00000301067	NM_003482.3	4468	Cgg/Tgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906566	32906566	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	33	323	0	ENST00000380152.3:c.956del	p.Asn319IlefsTer5	p.N319Ifs*5	ENST00000380152		317	acA/ac																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	42	388	1	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	359972	359972	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	75	365	0	ENST00000262320.3:c.1116+1G>A		p.X372_splice	ENST00000262320	NM_003502.3	372																																																																																
CTCF	10664	MSKCC	GRCh37	16	67645904	67645904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1266478000		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	58	339	0	ENST00000264010.4:c.832C>T	p.Arg278Cys	p.R278C	ENST00000264010	NM_006565.3	278	Cgt/Tgt																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	38	423	5	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244465	41244465	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80357459		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	39	355	0	ENST00000357654.3:c.3083G>A	p.Arg1028His	p.R1028H	ENST00000357654	NM_007294.3	1028	cGt/cAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	97	496	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440904	56440904	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1458799446		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	114	413	0	ENST00000407977.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000407977		145	Cga/Tga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533905	63533905	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	101	378	0	ENST00000307078.5:c.1249del	p.Ala417ArgfsTer41	p.A417Rfs*41	ENST00000307078	NM_004655.3	417	Gcg/cg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	62	366	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
STK11	6794	MSKCC	GRCh37	19	1219322	1219322	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	8	423	0	ENST00000326873.7:c.375-1C>T		p.X125_splice	ENST00000326873	NM_000455.4	125																																																																																
CALR	811	MSKCC	GRCh37	19	13054704	13054704	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746740154		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	91	342	0	ENST00000316448.5:c.1231G>A	p.Gly411Ser	p.G411S	ENST00000316448	NM_004343.3	411	Ggc/Agc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214728	36214728	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	13	380	0	ENST00000222270.7:c.3159del	p.Arg1055GlyfsTer127	p.R1055Gfs*127	ENST00000222270	NM_014727.1	1052	Ggg/gg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222943	36222943	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750345473		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	70	493	0	ENST00000222270.7:c.5572C>T	p.Arg1858Cys	p.R1858C	ENST00000222270	NM_014727.1	1858	Cgt/Tgt																																																																															
ERF	2077	MSKCC	GRCh37	19	42753099	42753099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	87	530	0	ENST00000222329.4:c.1165C>T	p.Arg389Trp	p.R389W	ENST00000222329	NM_006494.2	389	Cgg/Tgg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912817	50912817	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754913337		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	61	397	0	ENST00000440232.2:c.2048G>A	p.Arg683His	p.R683H	ENST00000440232	NM_002691.3	683	cGc/cAc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225379410	225379410	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs972626651		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	40	283	0	ENST00000264414.4:c.458G>A	p.Arg153His	p.R153H	ENST00000264414	NM_003590.4	153	cGt/cAt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965049	25965049	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780551383		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	45	384	0	ENST00000435504.4:c.4157C>T	p.Ala1386Val	p.A1386V	ENST00000435504		1386	gCg/gTg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31388045	31388045	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754182982		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	51	368	0	ENST00000328111.2:c.1846G>A	p.Val616Met	p.V616M	ENST00000328111	NM_006892.3	616	Gtg/Atg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	53	282	0	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279846	29279846	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	33	132	0	ENST00000544604.2:c.92del	p.Leu31ArgfsTer91	p.L31Rfs*91	ENST00000544604	NM_001206998.1	31	cTg/cg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446744	29446744	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1457204359		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	32	415	0	ENST00000544604.2:c.2575C>T	p.Arg859Ter	p.R859*	ENST00000544604	NM_001206998.1	859	Cga/Tga																																																																															
RAF1	5894	MSKCC	GRCh37	3	12660103	12660103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772390935		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	57	377	0	ENST00000251849.4:c.118C>T	p.Arg40Cys	p.R40C	ENST00000251849	NM_002880.3	40	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	51	326	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	41	308	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
TP63	8626	MSKCC	GRCh37	3	189526257	189526257	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201188464		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	110	477	0	ENST00000264731.3:c.521C>T	p.Pro174Leu	p.P174L	ENST00000264731	NM_003722.4	174	cCg/cTg																																																																															
MST1	4485	MSKCC	GRCh37	3	49722761	49722761	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs62262682		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			29	16	14	1	ENST00000449682.2:c.1478G>T	p.Arg493Leu	p.R493L	ENST00000449682	NM_020998.3	493	cGt/cTt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808985	1808985	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374547489		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	45	399	0	ENST00000260795.2:c.2417C>T	p.Thr806Met	p.T806M	ENST00000260795		806	aCg/aTg																																																																															
REST	5978	MSKCC	GRCh37	4	57796750	57796750	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1199978831		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	43	388	0	ENST00000309042.7:c.1732del	p.Ser578ValfsTer7	p.S578Vfs*7	ENST00000309042	NM_005612.4	576	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112176903	112176903	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	47	339	0	ENST00000257430.4:c.5612A>T	p.Asp1871Val	p.D1871V	ENST00000257430	NM_000038.5	1871	gAt/gTt																																																																															
FYN	2534	MSKCC	GRCh37	6	112024216	112024216	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756342493		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	43	307	0	ENST00000368678.4:c.569G>A	p.Arg190His	p.R190H	ENST00000368678		190	cGt/cAt																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402523	20402523	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs770338281		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	80	347	0	ENST00000346618.3:c.64del	p.Ala22ArgfsTer18	p.A22Rfs*18	ENST00000346618	NM_001949.4	20	gaG/ga																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225387	26225387	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776406667		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	110	380	0	ENST00000360408.1:c.5C>T	p.Ala2Val	p.A2V	ENST00000360408	NM_003532.2	2	gCg/gTg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911052	29911052	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			49	39	114	0	ENST00000376809.5:c.351del	p.His117GlnfsTer5	p.H117Qfs*5	ENST00000376809	NM_002116.7	117	caC/ca																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239570	31239570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs281860344		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	39	498	0	ENST00000376228.5:c.149G>A	p.Gly50Asp	p.G50D	ENST00000376228	NM_002117.5	50	gGc/gAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140482926	140482927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs777474487		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	58	403	0	ENST00000288602.6:c.1208dup	p.Ala404CysfsTer9	p.A404Cfs*9	ENST00000288602	NM_004333.4	403	cct/ccCt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845367	151845367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	57	455	0	ENST00000262189.6:c.13645C>T	p.Arg4549Cys	p.R4549C	ENST00000262189	NM_170606.2	4549	Cgc/Tgc																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345769	152345769	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1479955856		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	30	307	0	ENST00000359321.1:c.801del	p.Lys267AsnfsTer30	p.K267Nfs*30	ENST00000359321	NM_005431.1	267	aaA/aa																																																																															
NBN	4683	MSKCC	GRCh37	8	90958479	90958480	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs780235686		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	32	252	0	ENST00000265433.3:c.1958dup	p.Leu654AlafsTer5	p.L654Afs*5	ENST00000265433	NM_002485.4	653	aag/aaAg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39930282	39930282	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	61	358	0	ENST00000378444.4:c.3182del	p.Lys1061SerfsTer52	p.K1061Sfs*52	ENST00000378444	NM_001123385.1	1061	aAg/ag																																																																															
CDC73	79577	MSKCC	GRCh37	1	193205402	193205402	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368442389		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	24	378	0	ENST00000367435.3:c.1333G>A	p.Val445Ile	p.V445I	ENST00000367435	NM_024529.4	445	Gtt/Att																																																																															
RET	5979	MSKCC	GRCh37	10	43596107	43596107	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1188786351		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	42	381	0	ENST00000355710.3:c.274A>G	p.Thr92Ala	p.T92A	ENST00000355710	NM_020975.4	92	Acc/Gcc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180453	94180453	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200085146		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	49	365	0	ENST00000323929.3:c.1715G>A	p.Arg572Gln	p.R572Q	ENST00000323929	NM_005591.3	572	cGa/cAa																																																																															
POLE	5426	MSKCC	GRCh37	12	133202738	133202738	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759795841		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	54	424	0	ENST00000320574.5:c.6496G>A	p.Asp2166Asn	p.D2166N	ENST00000320574	NM_006231.2	2166	Gac/Aac																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2213999	2214000	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	72	389	0	ENST00000326181.6:c.81+1dup		p.-26fs	ENST00000326181	NM_032271.2	26	-/G																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89335038	89335038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	38	255	0	ENST00000301030.4:c.7840G>A	p.Ala2614Thr	p.A2614T	ENST00000301030	NM_001256183.1	2614	Gcg/Acg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37884208	37884208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	81	430	0	ENST00000269571.5:c.3679C>T	p.Pro1227Ser	p.P1227S	ENST00000269571		1227	Cca/Tca																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554450	63554451	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	99	434	0	ENST00000307078.5:c.288_289del	p.Thr97PhefsTer43	p.T97Ffs*43	ENST00000307078	NM_004655.3	96	cgAAct/cgct																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350300	15350300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	17	412	0	ENST00000263377.2:c.3479C>T	p.Pro1160Leu	p.P1160L	ENST00000263377	NM_058243.2	1160	cCt/cTt																																																																															
ALK	238	MSKCC	GRCh37	2	29551273	29551273	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	32	365	0	ENST00000389048.3:c.1357C>T	p.Gln453Ter	p.Q453*	ENST00000389048	NM_004304.4	453	Cag/Tag																																																																															
MSH2	4436	MSKCC	GRCh37	2	47705636	47705637	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	37	305	0	ENST00000233146.2:c.2437dup	p.Met813AsnfsTer11	p.M813Nfs*11	ENST00000233146	NM_000251.2	812	-/A																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99156021	99156021	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1179261857		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	65	350	0	ENST00000074304.5:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000074304	NM_001134224.1	234	cGg/cAg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024584	31024584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	21	403	0	ENST00000375687.4:c.4069G>A	p.Ala1357Thr	p.A1357T	ENST00000375687	NM_015338.5	1357	Gct/Act																																																																															
ERG	2078	MSKCC	GRCh37	21	39755720	39755720	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750603713		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	21	367	0	ENST00000288319.7:c.1045C>T	p.Arg349Trp	p.R349W	ENST00000288319	NM_182918.3	349	Cgg/Tgg																																																																															
RAC2	5880	MSKCC	GRCh37	22	37628869	37628869	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	44	311	0	ENST00000249071.6:c.197G>A	p.Arg66His	p.R66H	ENST00000249071	NM_002872.4	66	cGt/cAt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920432	134920432	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	41	354	0	ENST00000398015.3:c.2247C>A	p.Asn749Lys	p.N749K	ENST00000398015	NM_004441.4	749	aaC/aaA																																																																															
SMO	6608	MSKCC	GRCh37	7	128852083	128852083	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	16	489	0	ENST00000249373.3:c.2155T>G	p.Trp719Gly	p.W719G	ENST00000249373	NM_005631.4	719	Tgg/Ggg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978404	2978404	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778171630		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	53	402	0	ENST00000396946.4:c.926G>A	p.Arg309His	p.R309H	ENST00000396946	NM_032415.4	309	cGc/cAc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742480	145742480	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	61	400	0	ENST00000428558.2:c.308del	p.Pro103ArgfsTer11	p.P103Rfs*11	ENST00000428558	NM_004260.3	103	cCg/cg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285877	38285877	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	41	356	0	ENST00000425967.3:c.534del	p.Lys178AsnfsTer5	p.K178Nfs*5	ENST00000425967	NM_001174067.1	178	aaA/aa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135780989	135780989	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs118203609		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	51	361	0	ENST00000298552.3:c.1976C>T	p.Ala659Val	p.A659V	ENST00000298552	NM_001162426.1	659	gCg/gTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390804	139390804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs537210445		P-0075766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	56	511	0	ENST00000277541.6:c.7387G>A	p.Ala2463Thr	p.A2463T	ENST00000277541	NM_017617.3	2463	Gcc/Acc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0075797-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			403	30	354	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs760043106		P-0075797-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			593	14	505	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028852	47028852	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075797-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			237	15	176	0	ENST00000329236.7:c.158del	p.Gly53AlafsTer32	p.G53Afs*32	ENST00000329236	NM_001204466.1	52	gaG/ga																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185161297	185161297	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075800-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			563	100	408	0	ENST00000265026.3:c.724T>C	p.Tyr242His	p.Y242H	ENST00000265026	NM_004721.4	242	Tac/Cac																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0075801-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			220	585	485	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0075801-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			65	515	434	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
RET	5979	MSKCC	GRCh37	10	43600398	43600398	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0075801-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1317	141	414	0	ENST00000355710.3:c.626-2A>G		p.X209_splice	ENST00000355710	NM_020975.4	209																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151949129	151949129	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075801-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	221	394	0	ENST00000262189.6:c.1516A>T	p.Thr506Ser	p.T506S	ENST00000262189	NM_170606.2	506	Act/Tct																																																																															
ROS1	6098	MSKCC	GRCh37	6	117724380	117724380	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075801-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			564	252	553	1	ENST00000368508.3:c.499C>G	p.Arg167Gly	p.R167G	ENST00000368508	NM_002944.2	167	Cga/Gga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435746	49435747	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	C			P-0075801-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			79	596	519	0	ENST00000301067.7:c.6136_6137delinsG	p.Met2046GlyfsTer48	p.M2046Gfs*48	ENST00000301067	NM_003482.3	2046	ATg/Gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0075810-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			232	299	261	2	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056277	27056277	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075810-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			286	329	409	1	ENST00000324856.7:c.1273C>T	p.Gln425Ter	p.Q425*	ENST00000324856	NM_006015.4	425	Cag/Tag																																																																															
RET	5979	MSKCC	GRCh37	10	43610128	43610128	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193922700		P-0075810-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			273	179	387	0	ENST00000355710.3:c.2080C>T	p.Arg694Trp	p.R694W	ENST00000355710	NM_020975.4	694	Cgg/Tgg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72163774	72163774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075810-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			165	154	328	0	ENST00000357731.5:c.584G>A	p.Arg195Lys	p.R195K	ENST00000357731	NM_173808.2	195	aGg/aAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0075810-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			143	296	272	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35861089	35861089	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1263850945		P-0075810-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	114	297	0	ENST00000303115.3:c.218T>C	p.Ile73Thr	p.I73T	ENST00000303115	NM_002185.3	73	aTa/aCa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426353	49426354	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGA			P-0075810-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			292	256	421	0	ENST00000301067.7:c.12132_12134dup	p.His4044dup	p.H4044dup	ENST00000301067	NM_003482.3	4044	cag/caTCAg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99169289	99169289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075810-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			464	225	383	0	ENST00000074304.5:c.1219G>C	p.Asp407His	p.D407H	ENST00000074304	NM_001134224.1	407	Gat/Cat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340454	8340454	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075810-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			272	265	352	0	ENST00000356435.5:c.5142C>A	p.Tyr1714Ter	p.Y1714*	ENST00000356435		1714	taC/taA																																																																															
KDR	3791	MSKCC	GRCh37	4	55974011	55974011	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0075810-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			592	140	423	0	ENST00000263923.4:c.1305C>G	p.Tyr435Ter	p.Y435*	ENST00000263923	NM_002253.2	435	taC/taG																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509647	106509647	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs763755361		P-0075810-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			789	269	384	0	ENST00000359195.3:c.1641G>T	p.Met547Ile	p.M547I	ENST00000359195	NM_002649.2	547	atG/atT																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399428	139399428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075810-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	275	372	0	ENST00000277541.6:c.4715G>T	p.Gly1572Val	p.G1572V	ENST00000277541	NM_017617.3	1572	gGc/gTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411453	63411453	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075810-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	264	471	0	ENST00000330258.3:c.1714del	p.Glu572SerfsTer81	p.E572Sfs*81	ENST00000330258	NM_152424.3	572	Gag/ag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933628	39933628	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs375292840		P-0075810-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			277	170	405	0	ENST00000378444.4:c.971G>T	p.Gly324Val	p.G324V	ENST00000378444	NM_001123385.1	324	gGc/gTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467697	66467697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075810-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			512	114	341	0	ENST00000273854.3:c.572G>T	p.Arg191Leu	p.R191L	ENST00000273854	NM_004439.5	191	cGt/cTt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66233144	66233144	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0075810-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	212	246	0	ENST00000273854.3:c.1857-2A>T		p.X619_splice	ENST00000273854	NM_004439.5	619																																																																																
PRDM1	639	MSKCC	GRCh37	6	106555248	106555248	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075810-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			264	238	317	0	ENST00000369096.4:c.2365T>A	p.Cys789Ser	p.C789S	ENST00000369096	NM_001198.3	789	Tgc/Agc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716143	243716143	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075810-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			386	101	288	0	ENST00000263826.5:c.1051C>A	p.His351Asn	p.H351N	ENST00000263826	NM_005465.4	351	Cat/Aat																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225726	26225727	+	frameshift_variant	Frame_Shift_Ins	INS	CC	CC	AAA			P-0075810-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			467	382	459	0	ENST00000360408.1:c.344_345delinsAAA	p.Ala115GlufsTer9	p.A115Efs*9	ENST00000360408	NM_003532.2	115	gCC/gAAA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0075817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			653	202	304	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0075817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			658	180	412	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8524949	8524949	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771217760		P-0075967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	151	326	0	ENST00000356435.5:c.655G>A	p.Ala219Thr	p.A219T	ENST00000356435		219	Gct/Act																																																																															
JAK1	3716	MSKCC	GRCh37	1	65344759	65344759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	108	445	0	ENST00000342505.4:c.278G>A	p.Arg93His	p.R93H	ENST00000342505	NM_002227.2	93	cGc/cAc																																																																															
KIT	3815	MSKCC	GRCh37	4	55565826	55565826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	101	376	0	ENST00000288135.5:c.650C>T	p.Ser217Phe	p.S217F	ENST00000288135	NM_000222.2	217	tCc/tTc																																																																															
CTR9	9646	MSKCC	GRCh37	11	10778305	10778323	+	frameshift_variant	Frame_Shift_Del	DEL	GCATTTCCTTCAACAAGAA	GCATTTCCTTCAACAAGAA	-			P-0075967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	85	279	0	ENST00000361367.2:c.513_531del	p.Cys171TrpfsTer26	p.C171Wfs*26	ENST00000361367	NM_014633.3	171	tGCATTTCCTTCAACAAGAAg/tg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163313607	163313607	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	92	331	0	ENST00000271452.3:c.754A>C	p.Lys252Gln	p.K252Q	ENST00000271452	NM_145697.2	252	Aag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0075995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	437	535	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411173	63411173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	156	476	0	ENST00000330258.3:c.1994G>T	p.Gly665Val	p.G665V	ENST00000330258	NM_152424.3	665	gGc/gTc																																																																															
FH	2271	MSKCC	GRCh37	1	241667492	241667492	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766441385		P-0076039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	46	234	0	ENST00000366560.3:c.958G>A	p.Ala320Thr	p.A320T	ENST00000366560	NM_000143.3	320	Gct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	33	210	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970991	21971016	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCCAGCTCCTCAGCCAGGTCCACG	GGCCCAGCTCCTCAGCCAGGTCCACG	-			P-0076039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	77	421	0	ENST00000304494.5:c.342_367del	p.Val115SerfsTer18	p.V115Sfs*18	ENST00000304494	NM_000077.4	114	ccCGTGGACCTGGCTGAGGAGCTGGGCCat/ccat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577496	7577498	+	splice_donor_variant,intron_variant	Splice_Site	ONP	GAC	GAC	AAA			P-0076039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	64	298	0	ENST00000269305.4:c.782+1_782+3delinsTTT		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0076097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			50	48	558	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028610	12028610	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0076097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			32	37	299	0	ENST00000353533.5:c.814-1G>A		p.X272_splice	ENST00000353533	NM_003010.3	272																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			36	56	309	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604705	48604705	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs377767370		P-0076097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			79	58	403	0	ENST00000342988.3:c.1527G>A	p.Trp509Ter	p.W509*	ENST00000342988	NM_005359.5	509	tgG/tgA																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492861	56492862	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0076097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	48	376	0	ENST00000407977.2:c.77dup	p.Arg27ThrfsTer13	p.R27Tfs*13	ENST00000407977		26	gga/ggGa																																																																															
SUFU	51684	MSKCC	GRCh37	10	104359301	104359301	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs587778699		P-0076097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			78	45	351	0	ENST00000369902.3:c.1022C>T	p.Pro341Leu	p.P341L	ENST00000369902	NM_016169.3	341	cCg/cTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602293	10602293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	54	662	0	ENST00000171111.5:c.1285G>T	p.Gly429Cys	p.G429C	ENST00000171111	NM_203500.1	429	Ggc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220433	1220433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	62	606	0	ENST00000326873.7:c.526G>T	p.Asp176Tyr	p.D176Y	ENST00000326873	NM_000455.4	176	Gac/Tac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041725	47041725	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0076180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	45	584	0	ENST00000329236.7:c.1716G>T	p.Gln572His	p.Q572H	ENST00000329236	NM_001204466.1	572	caG/caT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0076180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	44	323	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
EZH1	2145	MSKCC	GRCh37	17	40876398	40876398	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	52	526	0	ENST00000428826.2:c.291G>C	p.Met97Ile	p.M97I	ENST00000428826		97	atG/atC																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523330	9523330	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	64	479	0	ENST00000353224.5:c.1907T>A	p.Met636Lys	p.M636K	ENST00000353224	NM_177990.2	636	aTg/aAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15978878	15978878	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	60	503	0	ENST00000268712.3:c.3640G>T	p.Gly1214Cys	p.G1214C	ENST00000268712	NM_006311.3	1214	Ggc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108216490	108216511	+	frameshift_variant	Frame_Shift_Del	DEL	TGAAGAGAAATATGAAGTCTTC	TGAAGAGAAATATGAAGTCTTC	-			P-0076180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	50	322	0	ENST00000278616.4:c.8439_8460del	p.Phe2813LeufsTer37	p.F2813Lfs*37	ENST00000278616	NM_000051.3	2813	ttTGAAGAGAAATATGAAGTCTTC/tt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519972		P-0076189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	66	106	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																															
CDH1	999	MSKCC	GRCh37	16	68845614	68845615	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0076189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	50	293	0	ENST00000261769.5:c.861dup	p.Asp288ArgfsTer5	p.D288Rfs*5	ENST00000261769	NM_004360.3	287	aca/acAa																																																																															
RB1	5925	MSKCC	GRCh37	13	48955485	48955485	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	22	49	0	ENST00000267163.4:c.1601G>C	p.Ser534Thr	p.S534T	ENST00000267163	NM_000321.2	534	aGt/aCt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115808	8115809	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0076215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	88	396	0	ENST00000346208.3:c.1158dup	p.Lys387GlnfsTer6	p.K387Qfs*6	ENST00000346208		385	ttc/ttCc																																																																															
CDH1	999	MSKCC	GRCh37	16	68844241	68844242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0076215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	68	289	0	ENST00000261769.5:c.829_830insT	p.Pro277LeufsTer16	p.P277Lfs*16	ENST00000261769	NM_004360.3	277	cca/cTca																																																																															
GATA2	2624	MSKCC	GRCh37	3	128199897	128199897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	35	430	0	ENST00000341105.2:c.1408C>T	p.Pro470Ser	p.P470S	ENST00000341105	NM_032638.4	470	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0076256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	203	575	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112178355	112178355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	188	332	0	ENST00000257430.4:c.7064C>T	p.Ser2355Leu	p.S2355L	ENST00000257430	NM_000038.5	2355	tCa/tTa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41234520	41234520	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs80357305		P-0076256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	176	380	0	ENST00000357654.3:c.4258C>T	p.Gln1420Ter	p.Q1420*	ENST00000357654	NM_007294.3	1420	Cag/Tag																																																																															
CTR9	9646	MSKCC	GRCh37	11	10790031	10790051	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCAGATGGTAATAGCTTCTC	TTCAGATGGTAATAGCTTCTC	-			P-0076256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	109	318	0	ENST00000361367.2:c.2104_2109+15del		p.X702_splice	ENST00000361367	NM_014633.3	702																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56177029	56177029	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0076256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	122	225	0	ENST00000399503.3:c.2299G>T	p.Glu767Ter	p.E767*	ENST00000399503	NM_005921.1	767	Gaa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29562754	29562754	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1135402850		P-0076256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	23	297	0	ENST00000358273.4:c.3834C>G	p.Asn1278Lys	p.N1278K	ENST00000358273	NM_001042492.2	1278	aaC/aaG																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933307	49933307	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749037053		P-0076290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	76	629	0	ENST00000296474.3:c.2803G>A	p.Val935Ile	p.V935I	ENST00000296474	NM_002447.2	935	Gta/Ata																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0076290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	56	530	0	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0076290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	47	276	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
MED12	9968	MSKCC	GRCh37	X	70347827	70347827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	55	597	0	ENST00000374080.3:c.3066G>T	p.Met1022Ile	p.M1022I	ENST00000374080		1022	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs587781642		P-0076331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	136	366	0	ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0076331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	97	206	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SDHA	6389	MSKCC	GRCh37	5	251174	251175	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0076331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	51	149	0	ENST00000264932.6:c.1619_1620delinsTT	p.Ser540Ile	p.S540I	ENST00000264932	NM_004168.2	540	aGC/aTT																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477084	67477084	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0076331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	263	352	0	ENST00000327367.4:c.891C>G	p.Tyr297Ter	p.Y297*	ENST00000327367	NM_005902.3	297	taC/taG																																																																															
CASP8	841	MSKCC	GRCh37	2	202150031	202150031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1167464002		P-0076335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	41	443	0	ENST00000358485.4:c.1472G>A	p.Arg491Gln	p.R491Q	ENST00000358485	NM_001080125.1	491	cGa/cAa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115698	8115840	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTAGATTAACAGACCCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCC	TTAGATTAACAGACCCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCC	-			P-0076335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	16	342	0	ENST00000346208.3:c.1048-3_1187del		p.X350_splice	ENST00000346208		350																																																																																
POLD1	5424	MSKCC	GRCh37	19	50905886	50905887	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0076335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			922	136	507	0	ENST00000440232.2:c.858_859delinsAA	p.Glu287Lys	p.E287K	ENST00000440232	NM_002691.3	286	ctGGag/ctAAag																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905893	50905893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			941	155	503	0	ENST00000440232.2:c.865G>A	p.Asp289Asn	p.D289N	ENST00000440232	NM_002691.3	289	Gac/Aac																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178551	56178551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	18	352	0	ENST00000399503.3:c.3524A>G	p.Gln1175Arg	p.Q1175R	ENST00000399503	NM_005921.1	1175	cAa/cGa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909444	50909444	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			910	49	490	0	ENST00000440232.2:c.1248A>C	p.Gln416His	p.Q416H	ENST00000440232	NM_002691.3	416	caA/caC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs397517201		P-0076347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	72	169	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186501416	186501416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	61	261	0	ENST00000323963.5:c.17C>T	p.Ala6Val	p.A6V	ENST00000323963		6	gCg/gTg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186501391	186501407	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	TTTCGGATCATGTCTGG	TTTCGGATCATGTCTGG	-			P-0076347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	64	256	0	ENST00000323963.5:c.-8_9del		p.*3*	ENST00000323963																																																																																		
MET	4233	MSKCC	GRCh37	7	116380954	116380954	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	40	334	0	ENST00000397752.3:c.1576T>C	p.Cys526Arg	p.C526R	ENST00000397752	NM_000245.2	526	Tgc/Cgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0076363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	146	525	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	86	278	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175343	112175350	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTTGAA	CTGTTGAA	-			P-0076363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	117	367	0	ENST00000257430.4:c.4052_4059del	p.Ala1351ValfsTer21	p.A1351Vfs*21	ENST00000257430	NM_000038.5	1351	gCTGTTGAA/g																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21344778	21344778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	53	393	0	ENST00000215739.8:c.755C>T	p.Thr252Ile	p.T252I	ENST00000215739	NM_006767.3	252	aCc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0076367-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	227	378	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437350	110437350	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076367-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	49	232	0	ENST00000375856.3:c.1051C>G	p.Pro351Ala	p.P351A	ENST00000375856	NM_003749.2	351	Ccg/Gcg																																																																															
APC	324	MSKCC	GRCh37	5	112175133	112175133	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0076367-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	167	413	0	ENST00000257430.4:c.3842C>A	p.Ser1281Ter	p.S1281*	ENST00000257430	NM_000038.5	1281	tCa/tAa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39593417	39593417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076367-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	112	304	0	ENST00000262039.4:c.1182G>A	p.Met394Ile	p.M394I	ENST00000262039	NM_002647.2	394	atG/atA																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631242	67631246	+	frameshift_variant	Frame_Shift_Del	DEL	AAATA	AAATA	-			P-0076367-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	24	366	0	ENST00000272342.5:c.1432_1436del	p.Lys478GlufsTer3	p.K478Efs*3	ENST00000272342	NM_019002.3	476	ggAAATAaa/ggaa																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156666	20156666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	92	160	0	ENST00000379607.5:c.91G>A	p.Asp31Asn	p.D31N	ENST00000379607	NM_001412.3	31	Gat/Aat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437499	49437499	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs186948725		P-0076368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	117	490	0	ENST00000301067.7:c.5386C>T	p.Arg1796Trp	p.R1796W	ENST00000301067	NM_003482.3	1796	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	66	288	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593452	48593452	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0076368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	79	363	0	ENST00000342988.3:c.1203C>A	p.Cys401Ter	p.C401*	ENST00000342988	NM_005359.5	401	tgC/tgA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916924	178916924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225060		P-0076369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	163	329	0	ENST00000263967.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000263967	NM_006218.2	104	cCa/cTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860221	151860221	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	244	520	0	ENST00000262189.6:c.10441C>T	p.Gln3481Ter	p.Q3481*	ENST00000262189	NM_170606.2	3481	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151851135	151851136	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0076369-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	195	356	0	ENST00000262189.6:c.12235dup	p.Leu4079ProfsTer14	p.L4079Pfs*14	ENST00000262189	NM_170606.2	4079	ctt/cCtt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242470	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC	rs397517096		P-0076370-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	57	418	0	ENST00000275493.2:c.2239_2240delinsCC	p.Leu747Pro	p.L747P	ENST00000275493	NM_005228.3	747	TTa/CCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7572991	7572991	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076370-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	43	409	0	ENST00000269305.4:c.1118del	p.Lys373ArgfsTer49	p.K373Rfs*49	ENST00000269305	NM_001126112.2	373	aAg/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913535		P-0076373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	67	237	0	ENST00000256078.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000256078	NM_033360.2	13	Ggc/Cgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444933	49444933	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746841307		P-0076373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	106	376	0	ENST00000301067.7:c.2533C>T	p.Arg845Trp	p.R845W	ENST00000301067	NM_003482.3	845	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577150	7577150	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	156	263	0	ENST00000269305.4:c.788del	p.Asn263IlefsTer82	p.N263Ifs*82	ENST00000269305	NM_001126112.2	263	aAt/at																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096995	11096995	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs34149887		P-0076373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	202	354	0	ENST00000344626.4:c.486G>T	p.Leu162Phe	p.L162F	ENST00000344626	NM_003072.3	162	ttG/ttT																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561122	9561122	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	103	353	0	ENST00000353224.5:c.660G>T	p.Gln220His	p.Q220H	ENST00000353224	NM_177990.2	220	caG/caT																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0076373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	158	247	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123220560	123220560	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	76	235	0	ENST00000218089.9:c.3217A>C	p.Lys1073Gln	p.K1073Q	ENST00000218089	NM_001042749.1	1073	Aaa/Caa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729690	162729690	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	71	393	0	ENST00000367921.3:c.776G>A	p.Trp259Ter	p.W259*	ENST00000367921	NM_006182.2	259	tGg/tAg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746060	162746060	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	302	357	0	ENST00000367921.3:c.2183A>T	p.Asp728Val	p.D728V	ENST00000367921	NM_006182.2	728	gAc/gTc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100518	8100518	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	203	347	0	ENST00000346208.3:c.492C>A	p.Asp164Glu	p.D164E	ENST00000346208		164	gaC/gaA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416548	49416548	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	98	385	0	ENST00000301067.7:c.16163A>T	p.Tyr5388Phe	p.Y5388F	ENST00000301067	NM_003482.3	5388	tAc/tTc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505519	25505519	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	149	259	0	ENST00000264709.3:c.239A>T	p.Gln80Leu	p.Q80L	ENST00000264709	NM_175629.2	80	cAg/cTg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430149	181430150	+	frameshift_variant,start_lost	Frame_Shift_Ins	INS	-	-	T			P-0076373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	10	108	0	ENST00000325404.1:c.2dup	p.Met1?	p.M1?	ENST00000325404	NM_003106.3	1	atg/aTtg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165043	47165043	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	51	297	0	ENST00000409792.3:c.1083G>T	p.Glu361Asp	p.E361D	ENST00000409792	NM_014159.6	361	gaG/gaT																																																																															
ALB	213	MSKCC	GRCh37	4	74283301	74283301	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	182	287	0	ENST00000295897.4:c.1343T>A	p.Val448Glu	p.V448E	ENST00000295897	NM_000477.5	448	gTa/gAa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518715	176518715	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	201	365	0	ENST00000292408.4:c.633G>T	p.Met211Ile	p.M211I	ENST00000292408	NM_213647.1	211	atG/atT																																																																															
MED12	9968	MSKCC	GRCh37	X	70341217	70341217	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	104	352	0	ENST00000374080.3:c.777del	p.Glu260SerfsTer53	p.E260Sfs*53	ENST00000374080		259	cTt/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0076374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	106	250	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843598	156843598	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375878564		P-0076374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	64	397	0	ENST00000524377.1:c.1024C>T	p.Arg342Trp	p.R342W	ENST00000524377	NM_002529.3	342	Cgg/Tgg																																																																															
MET	4233	MSKCC	GRCh37	7	116423407	116423407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913671		P-0076374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	2178	258	0	ENST00000397752.3:c.3682G>C	p.Asp1228His	p.D1228H	ENST00000397752	NM_000245.2	1228	Gac/Cac																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661671	227661671	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369611716		P-0076374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	245	352	0	ENST00000305123.5:c.1784G>A	p.Arg595Gln	p.R595Q	ENST00000305123	NM_005544.2	595	cGg/cAg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30095750	30095750	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	31	167	0	ENST00000331968.5:c.1738G>C	p.Val580Leu	p.V580L	ENST00000331968	NM_002742.2	580	Gta/Cta																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075148	16075149	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0076374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	132	285	0	ENST00000268712.3:c.403_404del	p.Glu135ArgfsTer9	p.E135Rfs*9	ENST00000268712	NM_006311.3	135	GAa/a																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30095726	30095726	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1028931732		P-0076374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	30	180	0	ENST00000331968.5:c.1762G>A	p.Val588Ile	p.V588I	ENST00000331968	NM_002742.2	588	Gta/Ata																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0076378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	295	377	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604775	48604775	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	30	283	0	ENST00000342988.3:c.1597C>A	p.Leu533Ile	p.L533I	ENST00000342988	NM_005359.5	533	Ctc/Atc																																																																															
IRF4	3662	MSKCC	GRCh37	6	394987	394987	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	96	314	0	ENST00000380956.4:c.383T>C	p.Val128Ala	p.V128A	ENST00000380956	NM_001195286.1	128	gTt/gCt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39911538	39911538	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	76	303	0	ENST00000378444.4:c.5092del	p.Tyr1698IlefsTer27	p.Y1698Ifs*27	ENST00000378444	NM_001123385.1	1698	Tat/at																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477102	67477114	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCGCAGAGTGC	CTTCGCAGAGTGC	-			P-0076378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	24	311	0	ENST00000327367.4:c.911_923del	p.Phe304SerfsTer33	p.F304Sfs*33	ENST00000327367	NM_005902.3	303	gtCTTCGCAGAGTGC/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0076379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	221	453	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173374	112173374	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	113	372	0	ENST00000257430.4:c.2083C>T	p.Gln695Ter	p.Q695*	ENST00000257430	NM_000038.5	695	Cag/Tag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483856	88483856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0076379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	101	343	1	ENST00000360948.2:c.1714A>G	p.Lys572Glu	p.K572E	ENST00000360948	NM_001012338.2	572	Aag/Gag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968252	2968252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	85	399	0	ENST00000396946.4:c.1734G>T	p.Lys578Asn	p.K578N	ENST00000396946	NM_032415.4	578	aaG/aaT																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672504	30672504	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	169	606	0	ENST00000376406.3:c.4456C>G	p.Pro1486Ala	p.P1486A	ENST00000376406	NM_014641.2	1486	Cct/Gct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0076387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	87	392	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0076387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	127	496	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909231		P-0076387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	31	124	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152201873	152201873	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779180038		P-0076387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	88	337	0	ENST00000206249.3:c.727C>T	p.Arg243Cys	p.R243C	ENST00000206249	NM_000125.3	243	Cgt/Tgt																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108241	8108241	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773142037		P-0076387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	46	450	0	ENST00000585124.1:c.983G>A	p.Arg328Gln	p.R328Q	ENST00000585124	NM_004217.3	328	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112174213	112174214	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0076387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	112	415	0	ENST00000257430.4:c.2926dup	p.Arg976LysfsTer9	p.R976Kfs*9	ENST00000257430	NM_000038.5	974	-/A																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442489	52442489	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0076387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	57	449	0	ENST00000460680.1:c.255+1G>A		p.X85_splice	ENST00000460680	NM_004656.3	85																																																																																
BAP1	8314	MSKCC	GRCh37	3	52437910	52437910	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0076387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	128	470	0	ENST00000460680.1:c.1251G>T	p.Arg417Ser	p.R417S	ENST00000460680	NM_004656.3	417	agG/agT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0076387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	167	404	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168665	32168665	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	94	467	0	ENST00000375023.3:c.4258G>T	p.Ala1420Ser	p.A1420S	ENST00000375023	NM_004557.3	1420	Gcc/Tcc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23614943	23614943	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	102	389	0	ENST00000261584.4:c.3398C>A	p.Thr1133Asn	p.T1133N	ENST00000261584	NM_024675.3	1133	aCt/aAt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440293	52440294	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0076387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	143	491	0	ENST00000460680.1:c.758dup	p.Thr254AspfsTer30	p.T254Dfs*30	ENST00000460680	NM_004656.3	253	cag/caAg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52702530	52702530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	44	257	0	ENST00000394830.3:c.368C>A	p.Ala123Glu	p.A123E	ENST00000394830	NM_018313.4	123	gCa/gAa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589588	67590149	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAATATAACACTCAGTTTCAAGAAAAAAGTCGAGAATATGATAGATTATATGAAGAATATACCCGCACATCCCAGGTGAGTTTTCTATGAAAATCAGATTAAAAAATAAGAGTTCTAAACTTTTAAAGACTAACATGGAAAAAAGAATTTAAAAGGTTGAGTTTTTACGAATGAGGTGGGGGTGAGAGCATTTATTTGTGAATCATTGTTGATTATTCTAGTGTAATATCTCTAAAGCTTTAAACCAAAAATTTTAAGTATCAGAATAATAAATTAAGTTCACGTGATAACTGAAGCAGTCACTGAGTTTCAAGTTGATTTAATTCGTGATAGAAGGATCCTGTTTAGATTGGAAGTTAGTAATAACTGGAAGTTTCACAGACTTGTCTAATCCCTGAAATGGAGATTTAGGCATTAATATATATCCTACCATGAAAAGGAAGGGCTATATACTGCTGTGCTTTTCTAGACCCTTATTCTTCACTGGTCACTCATGTATCTGGGAATGCCAGAGGGAACAGAAAACAACAGGGATGCTATAAACTACAATAGCTTTTAAGAA	GAATATAACACTCAGTTTCAAGAAAAAAGTCGAGAATATGATAGATTATATGAAGAATATACCCGCACATCCCAGGTGAGTTTTCTATGAAAATCAGATTAAAAAATAAGAGTTCTAAACTTTTAAAGACTAACATGGAAAAAAGAATTTAAAAGGTTGAGTTTTTACGAATGAGGTGGGGGTGAGAGCATTTATTTGTGAATCATTGTTGATTATTCTAGTGTAATATCTCTAAAGCTTTAAACCAAAAATTTTAAGTATCAGAATAATAAATTAAGTTCACGTGATAACTGAAGCAGTCACTGAGTTTCAAGTTGATTTAATTCGTGATAGAAGGATCCTGTTTAGATTGGAAGTTAGTAATAACTGGAAGTTTCACAGACTTGTCTAATCCCTGAAATGGAGATTTAGGCATTAATATATATCCTACCATGAAAAGGAAGGGCTATATACTGCTGTGCTTTTCTAGACCCTTATTCTTCACTGGTCACTCATGTATCTGGGAATGCCAGAGGGAACAGAAAACAACAGGGATGCTATAAACTACAATAGCTTTTAAGAA	-			P-0076387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	52	294	0	ENST00000274335.5:c.1353_1426-213del		p.X451_splice	ENST00000274335		451																																																																																
ATXN7	6314	MSKCC	GRCh37	3	63967936	63967936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	88	483	0	ENST00000295900.6:c.827C>A	p.Pro276Gln	p.P276Q	ENST00000295900	NM_000333.3	276	cCa/cAa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144520	11144520	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	42	308	0	ENST00000344626.4:c.3852C>A	p.Asp1284Glu	p.D1284E	ENST00000344626	NM_003072.3	1284	gaC/gaA																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933736	39933736	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200417267		P-0076387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	39	509	0	ENST00000378444.4:c.863C>T	p.Pro288Leu	p.P288L	ENST00000378444	NM_001123385.1	288	cCg/cTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0076391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	324	455	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212450	5212450	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1196839847		P-0076391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	173	516	0	ENST00000357368.4:c.4667C>T	p.Pro1556Leu	p.P1556L	ENST00000357368	NM_002850.3	1556	cCg/cTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68849496	68849497	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0076391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	214	463	0	ENST00000261769.5:c.1401dup	p.Thr468HisfsTer15	p.T468Hfs*15	ENST00000261769	NM_004360.3	467	acc/aCcc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123263413	123263413	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	34	325	0	ENST00000358487.5:c.1330C>A	p.Leu444Met	p.L444M	ENST00000358487	NM_000141.4	444	Ctg/Atg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0076392-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	51	263	0				ENST00000310581	NM_198253.2																																																																																	
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0076392-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	61	270	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044941	47044941	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076392-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	100	393	0	ENST00000329236.7:c.2033G>A	p.Trp678Ter	p.W678*	ENST00000329236	NM_001204466.1	678	tGg/tAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944401	40944401	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076392-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	70	336	0	ENST00000373198.4:c.2101T>A	p.Tyr701Asn	p.Y701N	ENST00000373198	NM_133170.3	701	Tac/Aac																																																																															
FLCN	201163	MSKCC	GRCh37	17	17122391	17122391	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076392-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	84	388	0	ENST00000285071.4:c.1004del	p.Cys335LeufsTer18	p.C335Lfs*18	ENST00000285071	NM_144997.5	335	tGt/tt																																																																															
WT1	7490	MSKCC	GRCh37	11	32417925	32417925	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1014605516		P-0076400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	74	388	0	ENST00000332351.3:c.1127C>T	p.Pro376Leu	p.P376L	ENST00000332351	NM_024426.4	376	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0076400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	73	246	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0076400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	54	344	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987189	36987190	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0076400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	49	299	0	ENST00000354822.5:c.499_500del	p.Met167GlufsTer271	p.M167Efs*271	ENST00000354822	NM_001079668.2	167	ATg/g																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89355004	89355004	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0076400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	96	417	0	ENST00000301030.4:c.676G>T	p.Glu226Ter	p.E226*	ENST00000301030	NM_001256183.1	226	Gag/Tag																																																																															
POT1	25913	MSKCC	GRCh37	7	124503618	124503618	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	92	341	0	ENST00000357628.3:c.332del	p.Gly111GlufsTer23	p.G111Efs*23	ENST00000357628	NM_015450.2	111	gGa/ga																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0076402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	133	271	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
BCL6	604	MSKCC	GRCh37	3	187447516	187447516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	123	455	0	ENST00000232014.4:c.677A>G	p.Lys226Arg	p.K226R	ENST00000232014	NM_001130845.1	226	aAg/aGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578495	7578507	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCTGCACAGGG	CAGCTGCACAGGG	-			P-0076402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	207	419	0	ENST00000269305.4:c.423_435del	p.Pro142GlyfsTer24	p.P142Gfs*24	ENST00000269305	NM_001126112.2	141	tgCCCTGTGCAGCTG/tg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0076402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	170	233	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CDKN2B-AS1	100048912	MSKCC	GRCh37	9	21994284	21994284	+	upstream_gene_variant	5'Flank	SNP	C	C	A	rs1444669684		P-0076402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	102	253	0				ENST00000428597																																																																																		
KDR	3791	MSKCC	GRCh37	4	55981185	55981185	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	181	321	0	ENST00000263923.4:c.514C>A	p.Pro172Thr	p.P172T	ENST00000263923	NM_002253.2	172	Cct/Act																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71945613	71945613	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	111	280	0	ENST00000298229.2:c.2369A>T	p.Asn790Ile	p.N790I	ENST00000298229	NM_001567.3	790	aAc/aTc																																																																															
EED	8726	MSKCC	GRCh37	11	85961434	85961434	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	153	300	0	ENST00000263360.6:c.211G>C	p.Gly71Arg	p.G71R	ENST00000263360	NM_003797.3	71	Gga/Cga																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932605	39932605	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	103	493	0	ENST00000378444.4:c.1994G>T	p.Gly665Val	p.G665V	ENST00000378444	NM_001123385.1	665	gGc/gTc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199609	138199609	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	104	292	0	ENST00000237289.4:c.1027G>T	p.Asp343Tyr	p.D343Y	ENST00000237289	NM_001270507.1	343	Gat/Tat																																																																															
AR	367	MSKCC	GRCh37	X	66765980	66765980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	111	410	0	ENST00000374690.3:c.992C>T	p.Ala331Val	p.A331V	ENST00000374690	NM_000044.3	331	gCt/gTt																																																																															
PAK1	5058	MSKCC	GRCh37	11	77103502	77103502	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	175	336	0	ENST00000356341.3:c.64A>G	p.Thr22Ala	p.T22A	ENST00000356341	NM_002576.4	22	Act/Gct																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519350	176519350	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	158	376	0	ENST00000292408.4:c.756G>T	p.Gln252His	p.Q252H	ENST00000292408	NM_213647.1	252	caG/caT																																																																															
ATRX	546	MSKCC	GRCh37	X	76829813	76829813	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	65	262	0	ENST00000373344.5:c.6228G>C	p.Lys2076Asn	p.K2076N	ENST00000373344	NM_000489.3	2076	aaG/aaC																																																																															
AKT3	10000	MSKCC	GRCh37	1	243858955	243858955	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	329	256	0	ENST00000263826.5:c.110G>C	p.Gly37Ala	p.G37A	ENST00000263826	NM_005465.4	37	gGa/gCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0076405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			54	173	349	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0076405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			33	77	378	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
NBN	4683	MSKCC	GRCh37	8	90992961	90992961	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs780470185		P-0076405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			54	37	259	0	ENST00000265433.3:c.480+1G>A		p.X160_splice	ENST00000265433	NM_002485.4	160																																																																																
CARD11	84433	MSKCC	GRCh37	7	2976720	2976720	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	23	447	0	ENST00000396946.4:c.1292T>A	p.Leu431Gln	p.L431Q	ENST00000396946	NM_032415.4	431	cTg/cAg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197762	66197762	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			55	12	350	0	ENST00000273854.3:c.2937G>T	p.Met979Ile	p.M979I	ENST00000273854	NM_004439.5	979	atG/atT																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347261	89347261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	30	467	0	ENST00000301030.4:c.5689G>A	p.Glu1897Lys	p.E1897K	ENST00000301030	NM_001256183.1	1897	Gag/Aag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658518	3658518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	13	447	0	ENST00000294008.3:c.448C>T	p.Pro150Ser	p.P150S	ENST00000294008	NM_032444.2	150	Cca/Tca																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862744	9862744	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0076405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			89	69	362	0	ENST00000330684.3:c.2559C>A	p.Cys853Ter	p.C853*	ENST00000330684	NM_001134407.1	853	tgC/tgA																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258956	153258956	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0076415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			40	143	331	0	ENST00000281708.4:c.859G>A	p.Glu287Lys	p.E287K	ENST00000281708	NM_033632.3	287	Gag/Aag																																																																															
PGR	5241	MSKCC	GRCh37	11	100998316	100998316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	77	304	0	ENST00000325455.5:c.1486C>T	p.Pro496Ser	p.P496S	ENST00000325455	NM_001202474.3	496	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578500	7578501	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	AA			P-0076415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	342	541	0	ENST00000269305.4:c.429_430delinsTT	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	143	gtGCag/gtTTag																																																																															
RB1	5925	MSKCC	GRCh37	13	48881543	48881543	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0076415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			60	700	281	0	ENST00000267163.4:c.264+1G>T		p.X88_splice	ENST00000267163	NM_000321.2	88																																																																																
GAB2	9846	MSKCC	GRCh37	11	77932743	77932743	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1171272835		P-0076415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	324	447	0	ENST00000361507.4:c.1741G>A	p.Glu581Lys	p.E581K	ENST00000361507	NM_080491.2	581	Gaa/Aaa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117679109	117679110	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0076415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	94	311	0	ENST00000368508.3:c.3711_3712delinsAT	p.His1237_Leu1238delinsGlnPhe	p.H1237_L1238delinsQF	ENST00000368508	NM_002944.2	1237	caCCtc/caATtc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0076417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	114	394	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0076417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	139	561	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457304	67457304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	51	544	0	ENST00000327367.4:c.278G>T	p.Arg93Leu	p.R93L	ENST00000327367	NM_005902.3	93	cGa/cTa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44923063	44923063	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0076417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	42	178	0	ENST00000377967.4:c.1923+1G>A		p.X641_splice	ENST00000377967	NM_021140.2	641																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0076417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	91	274	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46574044	46574044	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	107	402	0	ENST00000263734.3:c.59G>T	p.Arg20Leu	p.R20L	ENST00000263734	NM_001430.4	20	cGg/cTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573456	48573457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGCCTGTCTT			P-0076417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	240	399	0	ENST00000342988.3:c.50_51insTATGCCTGTCT	p.Ser18MetfsTer4	p.S18Mfs*4	ENST00000342988	NM_005359.5	14	gat/gATGCCTGTCTTat																																																																															
YES1	7525	MSKCC	GRCh37	18	751805	751805	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0076417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	84	188	0	ENST00000314574.4:c.272-1G>T		p.X91_splice	ENST00000314574	NM_005433.3	91																																																																																
NTRK1	4914	MSKCC	GRCh37	1	156843514	156843514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137994522		P-0076418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			751	387	569	0	ENST00000524377.1:c.940C>T	p.Arg314Cys	p.R314C	ENST00000524377	NM_002529.3	314	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0076418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	374	277	1	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
RB1	5925	MSKCC	GRCh37	13	49030387	49030387	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373601944		P-0076418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	310	412	2	ENST00000267163.4:c.1862G>A	p.Arg621His	p.R621H	ENST00000267163	NM_000321.2	621	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0076418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	307	574	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36224584	36224584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	143	592	0	ENST00000222270.7:c.7046C>T	p.Pro2349Leu	p.P2349L	ENST00000222270	NM_014727.1	2349	cCt/cTt																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121018	29121018	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137853009		P-0076418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	169	350	0	ENST00000328354.6:c.539G>A	p.Arg180His	p.R180H	ENST00000328354	NM_007194.3	180	cGc/cAc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455118	50455118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200163039		P-0076418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			808	200	319	0	ENST00000331340.3:c.665G>A	p.Arg222His	p.R222H	ENST00000331340	NM_006060.4	222	cGc/cAc																																																																															
KIT	3815	MSKCC	GRCh37	4	55593448	55593448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	78	431	0	ENST00000288135.5:c.1605G>T	p.Met535Ile	p.M535I	ENST00000288135	NM_000222.2	535	atG/atT																																																																															
APC	324	MSKCC	GRCh37	5	112175208	112175209	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0076418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	287	441	0	ENST00000257430.4:c.3918_3919del	p.Glu1306AspfsTer8	p.E1306Dfs*8	ENST00000257430	NM_000038.5	1306	gAA/g																																																																															
CARD11	84433	MSKCC	GRCh37	7	2949749	2949749	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	234	386	0	ENST00000396946.4:c.3195C>G	p.Ile1065Met	p.I1065M	ENST00000396946	NM_032415.4	1065	atC/atG																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0076420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	263	438	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692887	89692887	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660535		P-0076420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	10	209	0	ENST00000371953.3:c.371G>A	p.Cys124Tyr	p.C124Y	ENST00000371953	NM_000314.4	124	tGt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0076420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	190	394	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928060	178928086	+	inframe_deletion	In_Frame_Del	DEL	GCCAGTACCTCATGGATTAGAAGATTT	GCCAGTACCTCATGGATTAGAAGATTT	-			P-0076420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	18	337	0	ENST00000263967.3:c.1340_1366del	p.Pro447_Leu455del	p.P447_L455del	ENST00000263967	NM_006218.2	446	tgGCCAGTACCTCATGGATTAGAAGATTTg/tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	51	325	0	ENST00000342988.3:c.1255G>A	p.Gly419Arg	p.G419R	ENST00000342988	NM_005359.5	419	Ggg/Agg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587777894		P-0076420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	65	296	0	ENST00000361445.4:c.6644C>A	p.Ser2215Tyr	p.S2215Y	ENST00000361445	NM_004958.3	2215	tCt/tAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs749415085		P-0076420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	9	288	0	ENST00000263967.3:c.112C>A	p.Arg38Ser	p.R38S	ENST00000263967	NM_006218.2	38	Cgt/Agt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0076420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	107	253	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692992	89692992	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1114167673		P-0076420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	79	334	0	ENST00000371953.3:c.476G>T	p.Arg159Met	p.R159M	ENST00000371953	NM_000314.4	159	aGg/aTg																																																																															
PGR	5241	MSKCC	GRCh37	11	100922293	100922293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	40	261	0	ENST00000325455.5:c.2219G>T	p.Arg740Leu	p.R740L	ENST00000325455	NM_001202474.3	740	cGa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540652		P-0076424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	14	357	0	ENST00000269305.4:c.743G>C	p.Arg248Pro	p.R248P	ENST00000269305	NM_001126112.2	248	cGg/cCg																																																																															
APC	324	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398123121		P-0076426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	329	384	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2106666	2106666	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772558666		P-0076426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	233	362	0	ENST00000219476.3:c.670G>A	p.Ala224Thr	p.A224T	ENST00000219476	NM_000548.3	224	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578464	7578476	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGCCGGGCGG	GGGTGCCGGGCGG	-	rs876659215		P-0076426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	178	516	0	ENST00000269305.4:c.454_466del	p.Pro152AlafsTer14	p.P152Afs*14	ENST00000269305	NM_001126112.2	152	CCGCCCGGCACCCgc/gc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566718	212566718	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762812065		P-0076426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	145	364	0	ENST00000342788.4:c.1463G>A	p.Arg488Gln	p.R488Q	ENST00000342788	NM_005235.2	488	cGg/cAg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323266	31323266	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	365	393	0	ENST00000412585.2:c.723G>A	p.Trp241Ter	p.W241*	ENST00000412585	NM_005514.6	241	tgG/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	98	228	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43738993	43738993	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	63	356	0	ENST00000523873.1:c.10C>A	p.Leu4Met	p.L4M	ENST00000523873		4	Ctg/Atg																																																																															
BRAF	673	MSKCC	GRCh37	7	140449182	140449182	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	177	286	0	ENST00000288602.6:c.1897T>G	p.Tyr633Asp	p.Y633D	ENST00000288602	NM_004333.4	633	Tac/Gac																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554672	63554672	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	388	510	0	ENST00000307078.5:c.67C>G	p.Arg23Gly	p.R23G	ENST00000307078	NM_004655.3	23	Cgg/Ggg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295461	1295461	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0076426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	140	468	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0076428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	183	389	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0076428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	109	299	1	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108155201	108155201	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs200196781		P-0076428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	113	296	0	ENST00000278616.4:c.3993+1G>A		p.X1331_splice	ENST00000278616	NM_000051.3	1331																																																																																
PRDM1	639	MSKCC	GRCh37	6	106554349	106554349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	105	425	0	ENST00000369096.4:c.1877C>T	p.Thr626Met	p.T626M	ENST00000369096	NM_001198.3	626	aCg/aTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117686	70117687	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0076428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	214	529	0	ENST00000245479.2:c.155dup	p.Phe53ValfsTer199	p.F53Vfs*199	ENST00000245479	NM_000346.3	52	acg/aCcg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277901	41277901	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	213	448	0	ENST00000349496.5:c.1865C>A	p.Ala622Asp	p.A622D	ENST00000349496	NM_001904.3	622	gCt/gAt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267161	41267161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	246	458	0	ENST00000349496.5:c.745G>A	p.Asp249Asn	p.D249N	ENST00000349496	NM_001904.3	249	Gat/Aat																																																																															
RAD21	5885	MSKCC	GRCh37	8	117861252	117861252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	65	340	0	ENST00000297338.2:c.1637G>T	p.Gly546Val	p.G546V	ENST00000297338	NM_006265.2	546	gGg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0076429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	183	597	0	ENST00000324856.7:c.3977dup	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																															
AXL	558	MSKCC	GRCh37	19	41743987	41743987	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1306116384		P-0076429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	212	564	0	ENST00000301178.4:c.922C>T	p.Arg308Cys	p.R308C	ENST00000301178	NM_021913.4	308	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0076429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	34	248	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0076429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	284	508	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0076429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	119	442	0	ENST00000257430.4:c.4059_4060del	p.Glu1353AspfsTer21	p.E1353Dfs*21	ENST00000257430	NM_000038.5	1353	gaATtt/gatt																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599228	28599228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	161	557	0	ENST00000253063.3:c.674G>T	p.Ser225Ile	p.S225I	ENST00000253063	NM_031459.4	225	aGc/aTc																																																																															
SCG5	6447	MSKCC	GRCh37	15	32983941	32983941	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779541282		P-0076429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	30	396	0	ENST00000300175.4:c.520G>A	p.Gly174Arg	p.G174R	ENST00000300175	NM_001144757.1	174	Gga/Aga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117576	70117577	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0076429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	109	571	0	ENST00000245479.2:c.44_45insT	p.Glu15AspfsTer237	p.E15Dfs*237	ENST00000245479	NM_000346.3	15	gag/gaTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575090	48575090	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	56	331	0	ENST00000342988.3:c.284A>G	p.Tyr95Cys	p.Y95C	ENST00000342988	NM_005359.5	95	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0076432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	74	431	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0076432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	42	261	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856653	111856653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	31	362	1	ENST00000341259.2:c.704G>A	p.Arg235His	p.R235H	ENST00000341259	NM_005475.2	235	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0076437-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	120	455	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175466	112175466	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs786204170		P-0076437-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	69	395	0	ENST00000257430.4:c.4175C>A	p.Ser1392Ter	p.S1392*	ENST00000257430	NM_000038.5	1392	tCa/tAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332577	153332577	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076437-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	29	401	0	ENST00000281708.4:c.379C>T	p.Gln127Ter	p.Q127*	ENST00000281708	NM_033632.3	127	Cag/Tag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807913	3807913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076437-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	110	366	1	ENST00000262367.5:c.3506G>A	p.Arg1169His	p.R1169H	ENST00000262367	NM_004380.2	1169	cGc/cAc																																																																															
KIT	3815	MSKCC	GRCh37	4	55561756	55561756	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376469897		P-0076437-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	112	393	0	ENST00000288135.5:c.146G>A	p.Arg49His	p.R49H	ENST00000288135	NM_000222.2	49	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112174885	112174886	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0076437-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	90	360	0	ENST00000257430.4:c.3595_3596del	p.Lys1199GlufsTer8	p.K1199Efs*8	ENST00000257430	NM_000038.5	1198	tcAAag/tcag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076437-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	63	276	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139820172	139820173	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGTGATTGACGCCTTCAGGC			P-0076437-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	76	515	0	ENST00000247668.2:c.1327_1346dup	p.Asp450Ter	p.D450*	ENST00000247668	NM_021138.3	442	cac/caCGTGATTGACGCCTTCAGGCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0076438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	145	408	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372460	55372460	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0076438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			775	66	517	0	ENST00000297316.4:c.1150T>G	p.Ser384Ala	p.S384A	ENST00000297316	NM_022454.3	384	Tcc/Gcc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390732	139390732	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			844	154	632	0	ENST00000277541.6:c.7459C>T	p.Gln2487Ter	p.Q2487*	ENST00000277541	NM_017617.3	2487	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420694	49420694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	153	543	0	ENST00000301067.7:c.15055G>A	p.Ala5019Thr	p.A5019T	ENST00000301067	NM_003482.3	5019	Gcc/Acc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482374	56482374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	41	432	0	ENST00000267101.3:c.922G>A	p.Asp308Asn	p.D308N	ENST00000267101	NM_001982.3	308	Gac/Aac																																																																															
ASXL1	171023	MSKCC	GRCh37	20	30956879	30956879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	120	352	0	ENST00000375687.4:c.205G>A	p.Gly69Arg	p.G69R	ENST00000375687	NM_015338.5	69	Ggg/Agg																																																																															
CD79B	974	MSKCC	GRCh37	17	62007148	62007162	+	inframe_deletion	In_Frame_Del	DEL	GATAGGCACGATGAT	GATAGGCACGATGAT	-			P-0076438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	218	446	0	ENST00000392795.3:c.520_534del	p.Ile174_Ile178del	p.I174_I178del	ENST00000392795	NM_001039933.1	174	ATCATCGTGCCTATC/-																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627272	37627272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	57	419	0	ENST00000447079.4:c.1187G>A	p.Gly396Glu	p.G396E	ENST00000447079	NM_015083.1	396	gGa/gAa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156633	55156633	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	59	489	0	ENST00000257290.5:c.3034C>G	p.Leu1012Val	p.L1012V	ENST00000257290	NM_006206.4	1012	Ctg/Gtg																																																																															
EED	8726	MSKCC	GRCh37	11	85956300	85956300	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs780894846		P-0076438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	54	354	0	ENST00000263360.6:c.29C>G	p.Pro10Arg	p.P10R	ENST00000263360	NM_003797.3	10	cCg/cGg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794930	242794930	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	65	489	0	ENST00000334409.5:c.279C>G	p.Cys93Trp	p.C93W	ENST00000334409	NM_005018.2	93	tgC/tgG																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859206	151859229	+	stop_gained,protein_altering_variant	Nonsense_Mutation	DEL	CCTTCAGCTGGGTTCTGCTTCTCA	CCTTCAGCTGGGTTCTGCTTCTCA	GTAAATCAT			P-0076438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	74	371	1	ENST00000262189.6:c.11433_11456delinsATGATTTAC	p.Glu3812_Gly3819delinsTer	p.E3812_G3819delins*	ENST00000262189	NM_170606.2	3811	gtTGAGAAGCAGAACCCAGCTGAAGGa/gtATGATTTACa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435531	110435531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076445-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	23	255	0	ENST00000375856.3:c.2870C>T	p.Ser957Leu	p.S957L	ENST00000375856	NM_003749.2	957	tCg/tTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964143	28964143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766569666		P-0076445-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	90	268	0	ENST00000282397.4:c.1759G>A	p.Val587Ile	p.V587I	ENST00000282397	NM_002019.4	587	Gtt/Att																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0076445-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	66	332	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48604778	48604778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767383		P-0076445-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	64	263	0	ENST00000342988.3:c.1600C>T	p.Gln534Ter	p.Q534*	ENST00000342988	NM_005359.5	534	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0076447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	158	568	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249510	153249510	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1157879635		P-0076447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	94	431	0	ENST00000281708.4:c.1268G>T	p.Gly423Val	p.G423V	ENST00000281708	NM_033632.3	423	gGa/gTa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584593	48584593	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	134	524	0	ENST00000342988.3:c.766C>T	p.Gln256Ter	p.Q256*	ENST00000342988	NM_005359.5	256	Cag/Tag																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78896551	78896551	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183024326		P-0076447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	221	472	1	ENST00000306801.3:c.2548G>A	p.Val850Ile	p.V850I	ENST00000306801	NM_020761.2	850	Gtc/Atc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266654	41266654	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1267755116		P-0076447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	197	461	0	ENST00000349496.5:c.451C>T	p.Arg151Cys	p.R151C	ENST00000349496	NM_001904.3	151	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	78	323	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554620	63554621	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0076447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	131	652	0	ENST00000307078.5:c.118dup	p.Val40GlyfsTer101	p.V40Gfs*101	ENST00000307078	NM_004655.3	40	gtg/gGtg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118900	115118900	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	117	501	0	ENST00000257566.3:c.441del	p.Lys148AsnfsTer5	p.K148Nfs*5	ENST00000257566	NM_016569.3	147	gcC/gc																																																																															
APC	324	MSKCC	GRCh37	5	112175614	112175632	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTCCTCAAACAGCTCAA	ACCTCCTCAAACAGCTCAA	-			P-0076447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	143	542	0	ENST00000257430.4:c.4326_4344del	p.Pro1443SerfsTer24	p.P1443Sfs*24	ENST00000257430	NM_000038.5	1441	ccACCTCCTCAAACAGCTCAA/cc																																																																															
APC	324	MSKCC	GRCh37	5	112175128	112175129	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0076447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	82	504	0	ENST00000257430.4:c.3838_3839del	p.Leu1280ValfsTer4	p.L1280Vfs*4	ENST00000257430	NM_000038.5	1279	tcTTtg/tctg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	74	247	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs757274881		P-0076449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	341	395	0	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591909	48591911	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0076449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	79	372	0	ENST00000342988.3:c.1076_1078del	p.Gly359del	p.G359del	ENST00000342988	NM_005359.5	358	GGA/-																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873066	134873066	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762457030		P-0076449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	99	361	0	ENST00000398015.3:c.1370C>T	p.Pro457Leu	p.P457L	ENST00000398015	NM_004441.4	457	cCg/cTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918809	50918809	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	119	426	0	ENST00000440232.2:c.2679C>A	p.Asp893Glu	p.D893E	ENST00000440232	NM_002691.3	893	gaC/gaA																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239468	31239468	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs281860390		P-0076449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	71	393	0	ENST00000376228.5:c.251G>A	p.Trp84Ter	p.W84*	ENST00000376228	NM_002117.5	84	tGg/tAg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0076450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	127	321	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0076450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	252	463	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288496	15288496	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1162468178		P-0076450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	113	295	0	ENST00000263388.2:c.4243G>A	p.Gly1415Ser	p.G1415S	ENST00000263388	NM_000435.2	1415	Ggc/Agc																																																																															
SCG5	6447	MSKCC	GRCh37	15	32972038	32972038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	183	397	0	ENST00000300175.4:c.298G>A	p.Gly100Arg	p.G100R	ENST00000300175	NM_001144757.1	100	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112116511	112116511	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0076450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	18	321	0	ENST00000257430.4:c.556A>T	p.Arg186Ter	p.R186*	ENST00000257430	NM_000038.5	186	Aga/Tga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	441094	441094	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	190	389	0	ENST00000399788.2:c.1664C>A	p.Thr555Asn	p.T555N	ENST00000399788	NM_001042603.1	555	aCc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0076451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	354	459	1	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743865	40743865	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758531464		P-0076451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	123	281	0	ENST00000373198.4:c.3130G>A	p.Val1044Ile	p.V1044I	ENST00000373198	NM_133170.3	1044	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0076451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	138	344	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987326	2987326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	136	360	0	ENST00000396946.4:c.103C>T	p.Arg35Cys	p.R35C	ENST00000396946	NM_032415.4	35	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112170780	112170783	+	frameshift_variant	Frame_Shift_Del	DEL	ACAA	ACAA	-			P-0076451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	127	358	0	ENST00000257430.4:c.1879_1882del	p.Asn627LeufsTer2	p.N627Lfs*2	ENST00000257430	NM_000038.5	626	ACAAac/ac																																																																															
NUP93	9688	MSKCC	GRCh37	16	56872908	56872908	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1295333719		P-0076451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	119	310	0	ENST00000308159.5:c.2063C>T	p.Thr688Met	p.T688M	ENST00000308159	NM_014669.4	688	aCg/aTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2974157	2974157	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0076451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	272	419	0	ENST00000396946.4:c.1448C>A	p.Ser483Ter	p.S483*	ENST00000396946	NM_032415.4	483	tCa/tAa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729750	41729750	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0076451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	119	376	0	ENST00000242208.4:c.779A>C	p.Lys260Thr	p.K260T	ENST00000242208	NM_002192.2	260	aAg/aCg																																																																															
KDR	3791	MSKCC	GRCh37	4	55963852	55963852	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	94	295	0	ENST00000263923.4:c.2591C>A	p.Thr864Lys	p.T864K	ENST00000263923	NM_002253.2	864	aCa/aAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	256	336	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	144	529	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	150	445	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	85	297	0	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743924	40743924	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199514226		P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	132	371	0	ENST00000373198.4:c.3071C>T	p.Thr1024Met	p.T1024M	ENST00000373198	NM_133170.3	1024	aCg/aTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913253	39913253	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	139	224	0	ENST00000378444.4:c.4862del	p.Pro1621GlnfsTer53	p.P1621Qfs*53	ENST00000378444	NM_001123385.1	1621	cCa/ca																																																																															
FLT4	2324	MSKCC	GRCh37	5	180055952	180055952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	121	344	0	ENST00000261937.6:c.1033G>A	p.Ala345Thr	p.A345T	ENST00000261937	NM_182925.4	345	Gcc/Acc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945969	17945969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758959409		P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	158	454	0	ENST00000458235.1:c.1970G>A	p.Arg657Gln	p.R657Q	ENST00000458235	NM_000215.3	657	cGg/cAg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661663	227661664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761880048		P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	105	479	3	ENST00000305123.5:c.1791dup	p.His598AlafsTer13	p.H598Afs*13	ENST00000305123	NM_005544.2	597	-/G																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553707	106553707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753053806		P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	184	439	0	ENST00000369096.4:c.1672G>A	p.Gly558Ser	p.G558S	ENST00000369096	NM_001198.3	558	Ggc/Agc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413710	138413710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	134	333	0	ENST00000289153.2:c.1810del	p.Arg604GlyfsTer4	p.R604Gfs*4	ENST00000289153	NM_006219.2	604	Cgg/gg																																																																															
IGF2	3481	MSKCC	GRCh37	11	2161456	2161456	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs970922682		P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	161	403	1	ENST00000434045.2:c.71G>A	p.Arg24His	p.R24H	ENST00000434045	NM_001127598.1	24	cGc/cAc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141559317	141559317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	149	456	0	ENST00000220592.5:c.1484C>T	p.Ala495Val	p.A495V	ENST00000220592	NM_012154.3	495	gCg/gTg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40856673	40856673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	118	259	0	ENST00000428826.2:c.1964G>A	p.Arg655His	p.R655H	ENST00000428826		655	cGc/cAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948747	71948748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs760925109		P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	120	490	5	ENST00000298229.2:c.3466dup	p.Arg1156ProfsTer59	p.R1156Pfs*59	ENST00000298229	NM_001567.3	1153	-/C																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43714075	43714075	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs773155828		P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	181	407	0	ENST00000382044.4:c.4078C>T	p.Arg1360Ter	p.R1360*	ENST00000382044	NM_001141980.1	1360	Cga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261814	16261814	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	133	460	0	ENST00000375759.3:c.9079C>T	p.Arg3027Ter	p.R3027*	ENST00000375759	NM_015001.2	3027	Cga/Tga																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103504578	103504578	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	124	290	0	ENST00000355739.4:c.204del	p.Arg69GlufsTer15	p.R69Efs*15	ENST00000355739	NM_000123.3	67	Ttt/tt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919027	50919027	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775310798		P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	117	363	0	ENST00000440232.2:c.2764G>A	p.Val922Ile	p.V922I	ENST00000440232	NM_002691.3	922	Gtc/Atc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523316	9523316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	122	396	0	ENST00000353224.5:c.1921C>T	p.Pro641Ser	p.P641S	ENST00000353224	NM_177990.2	641	Ccc/Tcc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526792	31526792	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	117	384	0	ENST00000344624.3:c.248del	p.Pro83HisfsTer25	p.P83Hfs*25	ENST00000344624		83	cCa/ca																																																																															
CIC	23152	MSKCC	GRCh37	19	42799130	42799131	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	77	341	2	ENST00000575354.2:c.4620dup	p.Thr1541HisfsTer18	p.T1541Hfs*18	ENST00000575354	NM_015125.3	1538	-/C																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922019	39922019	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs577082253		P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	135	191	0	ENST00000378444.4:c.4153G>A	p.Val1385Met	p.V1385M	ENST00000378444	NM_001123385.1	1385	Gtg/Atg																																																																															
FYN	2534	MSKCC	GRCh37	6	112041169	112041169	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766059845		P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	186	440	0	ENST00000368678.4:c.86G>A	p.Arg29His	p.R29H	ENST00000368678		29	cGc/cAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18691218	18691218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	127	313	0	ENST00000266497.5:c.3329G>A	p.Ser1110Asn	p.S1110N	ENST00000266497		1110	aGc/aAc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445208	29445209	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	175	425	0	ENST00000544604.2:c.1046_1047del	p.Val349GlyfsTer117	p.V349Gfs*117	ENST00000544604	NM_001206998.1	347	GTg/g																																																																															
AGO2	27161	MSKCC	GRCh37	8	141559300	141559300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	58	483	0	ENST00000220592.5:c.1501G>A	p.Val501Met	p.V501M	ENST00000220592	NM_012154.3	501	Gtg/Atg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134269	11134269	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	128	335	0	ENST00000344626.4:c.2935C>T	p.Arg979Ter	p.R979*	ENST00000344626	NM_003072.3	979	Cga/Tga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129429	2129429	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs45517290		P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	94	389	0	ENST00000219476.3:c.3284G>A	p.Ser1095Asn	p.S1095N	ENST00000219476	NM_000548.3	1095	aGc/aAc																																																																															
STK19	8859	MSKCC	GRCh37	6	31948431	31948431	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			75	23	86	0	ENST00000375331.2:c.902G>A	p.Gly301Glu	p.G301E	ENST00000375331	NM_004197.1	301	gGg/gAg																																																																															
ACVR1	90	MSKCC	GRCh37	2	158626984	158626984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	156	332	0	ENST00000263640.3:c.686G>T	p.Gly229Val	p.G229V	ENST00000263640	NM_001105.4	229	gGg/gTg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243668585	243668585	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	112	355	0	ENST00000263826.5:c.1406C>A	p.Pro469His	p.P469H	ENST00000263826	NM_005465.4	469	cCt/cAt																																																																															
ALK	238	MSKCC	GRCh37	2	29917796	29917796	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs572340007		P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	112	342	0	ENST00000389048.3:c.872G>A	p.Arg291His	p.R291H	ENST00000389048	NM_004304.4	291	cGc/cAc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066567	94066567	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	137	468	0	ENST00000369303.4:c.1192A>G	p.Asn398Asp	p.N398D	ENST00000369303	NM_004440.3	398	Aac/Gac																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864389	162864389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs577232474		P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	136	362	0	ENST00000366898.1:c.124C>T	p.Arg42Cys	p.R42C	ENST00000366898	NM_004562.2	42	Cgt/Tgt																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794384	242794384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	125	410	0	ENST00000334409.5:c.558G>T	p.Trp186Cys	p.W186C	ENST00000334409	NM_005018.2	186	tgG/tgT																																																																															
SOS1	6654	MSKCC	GRCh37	2	39214633	39214633	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1388995840		P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	139	258	0	ENST00000402219.2:c.3491C>T	p.Ala1164Val	p.A1164V	ENST00000402219	NM_005633.3	1164	gCa/gTa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118963	70118963	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs794727247		P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	130	485	0	ENST00000245479.2:c.535A>G	p.Arg179Gly	p.R179G	ENST00000245479	NM_000346.3	179	Agg/Ggg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375132	118375132	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	146	465	0	ENST00000534358.1:c.8525A>T	p.Asp2842Val	p.D2842V	ENST00000534358	NM_005933.3	2842	gAt/gTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040716	47040716	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0076458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	137	221	0	ENST00000329236.7:c.1117G>T	p.Glu373Ter	p.E373*	ENST00000329236	NM_001204466.1	373	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0076458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	59	282	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15818072	15818072	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0076458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	134	169	0	ENST00000307771.7:c.199G>T	p.Glu67Ter	p.E67*	ENST00000307771	NM_005089.3	67	Gag/Tag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061198	38061198	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	149	385	0	ENST00000250448.2:c.791del	p.Lys264SerfsTer57	p.K264Sfs*57	ENST00000250448	NM_004496.3	264	aAg/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0076459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	122	388	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																															
ETV6	2120	MSKCC	GRCh37	12	11992223	11992223	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	128	404	0	ENST00000396373.4:c.313C>G	p.Arg105Gly	p.R105G	ENST00000396373	NM_001987.4	105	Cga/Gga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147560	47147560	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	84	502	0	ENST00000409792.3:c.4766T>G	p.Phe1589Cys	p.F1589C	ENST00000409792	NM_014159.6	1589	tTt/tGt																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21337321	21337321	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	245	418	0	ENST00000215739.8:c.206G>T	p.Ser69Ile	p.S69I	ENST00000215739	NM_006767.3	69	aGc/aTc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0076463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	99	354	1	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
IGF1R	3480	MSKCC	GRCh37	15	99472880	99472880	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	66	358	0	ENST00000268035.6:c.2876A>G	p.His959Arg	p.H959R	ENST00000268035	NM_000875.3	959	cAt/cGt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589316	28589316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	29	304	0	ENST00000241453.7:c.2731C>A	p.Pro911Thr	p.P911T	ENST00000241453	NM_004119.2	911	Cca/Aca																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164966	47164966	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	32	388	0	ENST00000409792.3:c.1160del	p.Thr387IlefsTer97	p.T387Ifs*97	ENST00000409792	NM_014159.6	387	aCt/at																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165264	47165264	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0076467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	38	387	0	ENST00000409792.3:c.862A>T	p.Lys288Ter	p.K288*	ENST00000409792	NM_014159.6	288	Aag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119077	70119077	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076467-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	18	406	0	ENST00000245479.2:c.650del	p.Gly217AlafsTer2	p.G217Afs*2	ENST00000245479	NM_000346.3	217	Ggc/gc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0076471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	36	172	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0076471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	173	399	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0076471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	107	463	3	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2039783	2039818	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAA	CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAA	-	rs1334894604		P-0076471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	60	388	0	ENST00000349721.2:c.680_715del	p.Gln227_Gln238del	p.Q227_Q238del	ENST00000349721	NM_003070.3	225	CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAA/-																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470974	25470974	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	44	414	0	ENST00000264709.3:c.787G>C	p.Glu263Gln	p.E263Q	ENST00000264709	NM_175629.2	263	Gag/Cag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41226429	41226429	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	78	374	0	ENST00000357654.3:c.4594G>C	p.Val1532Leu	p.V1532L	ENST00000357654	NM_007294.3	1532	Gtt/Ctt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88670431	88670431	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1186292489		P-0076471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	129	309	0	ENST00000360948.2:c.1255A>G	p.Ile419Val	p.I419V	ENST00000360948	NM_001012338.2	419	Atc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579575	7579575	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	80	471	0	ENST00000269305.4:c.112del	p.Gln38LysfsTer6	p.Q38Kfs*6	ENST00000269305	NM_001126112.2	38	Caa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	94	377	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781894		P-0076476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	85	413	0	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156841451	156841451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	60	449	0	ENST00000524377.1:c.754G>A	p.Ala252Thr	p.A252T	ENST00000524377	NM_002529.3	252	Gcc/Acc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs867384286		P-0076476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	42	358	0	ENST00000281708.4:c.1393C>G	p.Arg465Gly	p.R465G	ENST00000281708	NM_033632.3	465	Cgt/Ggt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0076477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	75	268	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0076477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	46	386	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675170	30675172	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs1472156046		P-0076477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	55	308	0	ENST00000376406.3:c.3073_3075del	p.Lys1025del	p.K1025del	ENST00000376406	NM_014641.2	1025	AAG/-																																																																															
APC	324	MSKCC	GRCh37	5	112136997	112136997	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0076477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	49	260	0	ENST00000257430.4:c.751G>T	p.Glu251Ter	p.E251*	ENST00000257430	NM_000038.5	251	Gaa/Taa																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321298	1321298	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757079410		P-0076477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	23	296	0	ENST00000381566.1:c.457C>T	p.Arg153Trp	p.R153W	ENST00000381566		153	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16247473	16247473	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	55	267	0	ENST00000375759.3:c.1744A>C	p.Ile582Leu	p.I582L	ENST00000375759	NM_015001.2	582	Att/Ctt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67358600	67358600	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	55	328	0	ENST00000327367.4:c.108G>T	p.Lys36Asn	p.K36N	ENST00000327367	NM_005902.3	36	aaG/aaT																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857488	9857488	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	64	338	0	ENST00000330684.3:c.3913A>G	p.Ser1305Gly	p.S1305G	ENST00000330684	NM_001134407.1	1305	Agc/Ggc																																																																															
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1023835002		P-0076493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	176	372	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	104	468	0	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0076493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	82	312	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749500	41749500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	82	320	0	ENST00000226382.2:c.295C>T	p.Arg99Trp	p.R99W	ENST00000226382	NM_003924.3	99	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786204041		P-0076493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	167	511	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740522	58740522	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	115	400	0	ENST00000305921.3:c.1430del	p.Asn477IlefsTer6	p.N477Ifs*6	ENST00000305921	NM_003620.3	476	gAa/ga																																																																															
ATR	545	MSKCC	GRCh37	3	142178198	142178198	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778835776		P-0076493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	80	240	0	ENST00000350721.4:c.7220G>A	p.Arg2407His	p.R2407H	ENST00000350721	NM_001184.3	2407	cGc/cAc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554326	63554326	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	137	457	0	ENST00000307078.5:c.413A>G	p.Tyr138Cys	p.Y138C	ENST00000307078	NM_004655.3	138	tAc/tGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101186	27101186	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0076493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	103	492	0	ENST00000324856.7:c.4468G>T	p.Glu1490Ter	p.E1490*	ENST00000324856	NM_006015.4	1490	Gag/Tag																																																																															
AKT2	208	MSKCC	GRCh37	19	40761165	40761165	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	106	341	0	ENST00000392038.2:c.187A>T	p.Met63Leu	p.M63L	ENST00000392038	NM_001626.4	63	Atg/Ttg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250797	153250831	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTGAAGTGTAGGAAGAGTAAACTTACTTTGCCTG	TGTGAAGTGTAGGAAGAGTAAACTTACTTTGCCTG	-			P-0076493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	73	181	0	ENST00000281708.4:c.1229_1236+27del		p.X410_splice	ENST00000281708	NM_033632.3	410																																																																																
APC	324	MSKCC	GRCh37	5	112175742	112175743	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0076493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	111	410	0	ENST00000257430.4:c.4452_4453dup	p.Ala1485ValfsTer23	p.A1485Vfs*23	ENST00000257430	NM_000038.5	1484	gat/gaTGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0076494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	10	183	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670339	134670339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1303716587		P-0076494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	22	358	0	ENST00000398015.3:c.250C>T	p.Arg84Cys	p.R84C	ENST00000398015	NM_004441.4	84	Cgc/Tgc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905321	50905321	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760402496		P-0076494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	31	481	0	ENST00000440232.2:c.529C>T	p.Arg177Cys	p.R177C	ENST00000440232	NM_002691.3	177	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0076494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	16	212	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112116566	112116566	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	13	307	0	ENST00000257430.4:c.611del	p.Leu204GlnfsTer15	p.L204Qfs*15	ENST00000257430	NM_000038.5	204	cTa/ca																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68934896	68934896	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs144682160		P-0076494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	10	337	0	ENST00000487270.1:c.965T>C	p.Ile322Thr	p.I322T	ENST00000487270	NM_133509.3	322	aTt/aCt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0076495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	11	180	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508539	106508539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	45	349	0	ENST00000359195.3:c.533G>A	p.Arg178His	p.R178H	ENST00000359195	NM_002649.2	178	cGt/cAt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115864	8115881	+	inframe_deletion	In_Frame_Del	DEL	AGCCACATCTCGCCCTTC	AGCCACATCTCGCCCTTC	-			P-0076495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	72	462	0	ENST00000346208.3:c.1216_1233del	p.Ile406_His411del	p.I406_H411del	ENST00000346208		404	AGCCACATCTCGCCCTTC/-																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78831695	78831695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	40	303	0	ENST00000306801.3:c.1504G>A	p.Asp502Asn	p.D502N	ENST00000306801	NM_020761.2	502	Gac/Aac																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679734	88679734	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	25	351	0	ENST00000360948.2:c.729G>C	p.Trp243Cys	p.W243C	ENST00000360948	NM_001012338.2	243	tgG/tgC																																																																															
ATM	472	MSKCC	GRCh37	11	108123575	108123575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747242300		P-0076495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	18	244	0	ENST00000278616.4:c.1834C>T	p.Leu612Phe	p.L612F	ENST00000278616	NM_000051.3	612	Ctt/Ttt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0076496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	185	419	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881414	37881414	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1131692237		P-0076496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	160	418	0	ENST00000269571.5:c.2606T>G	p.Leu869Arg	p.L869R	ENST00000269571		869	cTg/cGg																																																																															
CDH1	999	MSKCC	GRCh37	16	68847225	68847225	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782798		P-0076496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			73	120	306	0	ENST00000261769.5:c.1147C>T	p.Gln383Ter	p.Q383*	ENST00000261769	NM_004360.3	383	Cag/Tag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021818	71021818	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs869025203		P-0076496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	118	309	0	ENST00000318789.4:c.1540C>T	p.Arg514Cys	p.R514C	ENST00000318789	NM_032682.5	514	Cgt/Tgt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118941	115118941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	224	306	0	ENST00000257566.3:c.400C>A	p.Pro134Thr	p.P134T	ENST00000257566	NM_016569.3	134	Cct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0076501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	205	424	0	ENST00000269305.4:c.321C>G	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taG																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991805	72991805	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	52	408	0	ENST00000268489.5:c.2240C>G	p.Ser747Cys	p.S747C	ENST00000268489	NM_006885.3	747	tCt/tGt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807820	1807820	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200849753		P-0076501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	203	539	0	ENST00000260795.2:c.1879G>A	p.Glu627Lys	p.E627K	ENST00000260795		627	Gag/Aag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098809	178098809	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	95	321	0	ENST00000397062.3:c.236A>G	p.Glu79Gly	p.E79G	ENST00000397062	NM_006164.4	79	gAg/gGg																																																																															
ALK	238	MSKCC	GRCh37	2	29917796	29917796	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs572340007		P-0076501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	155	366	0	ENST00000389048.3:c.872G>A	p.Arg291His	p.R291H	ENST00000389048	NM_004304.4	291	cGc/cAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29527494	29527494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	70	322	0	ENST00000358273.4:c.943C>G	p.Gln315Glu	p.Q315E	ENST00000358273	NM_001042492.2	315	Cag/Gag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285174	212285174	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	37	273	0	ENST00000342788.4:c.3127T>A	p.Ser1043Thr	p.S1043T	ENST00000342788	NM_005235.2	1043	Tcg/Acg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0076502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	21	219	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0076502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	36	252	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0076502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	70	376	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9892271	9892271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	89	327	1	ENST00000330684.3:c.2219G>T	p.Gly740Val	p.G740V	ENST00000330684	NM_001134407.1	740	gGg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112173279	112173283	+	frameshift_variant	Frame_Shift_Del	DEL	AAACT	AAACT	-			P-0076502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	44	260	0	ENST00000257430.4:c.1988_1992del	p.Gln663LeufsTer9	p.Q663Lfs*9	ENST00000257430	NM_000038.5	663	cAAACT/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0076515-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			366	144	524	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219903	36219903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076515-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			492	60	657	0	ENST00000222270.7:c.4705C>T	p.Pro1569Ser	p.P1569S	ENST00000222270	NM_014727.1	1569	Ccg/Tcg																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0076515-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			302	49	301	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64135962	64135962	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076515-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			543	113	644	0	ENST00000334205.4:c.1223A>G	p.Tyr408Cys	p.Y408C	ENST00000334205	NM_003942.2	408	tAc/tGc																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33680921	33680921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076515-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			238	93	301	0	ENST00000308377.4:c.1356G>T	p.Gln452His	p.Q452H	ENST00000308377	NM_152270.3	452	caG/caT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628104	187628104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076515-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			509	73	591	0	ENST00000441802.2:c.2878G>T	p.Gly960Cys	p.G960C	ENST00000441802	NM_005245.3	960	Ggt/Tgt																																																																															
FANCC	2176	MSKCC	GRCh37	9	98009777	98009777	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076515-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			258	32	296	0	ENST00000289081.3:c.187A>G	p.Arg63Gly	p.R63G	ENST00000289081	NM_000136.2	63	Aga/Gga																																																																															
RB1	5925	MSKCC	GRCh37	13	48936984	48936984	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772678500		P-0076527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	12	292	0	ENST00000267163.4:c.752G>A	p.Arg251Gln	p.R251Q	ENST00000267163	NM_000321.2	251	cGa/cAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0076527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	59	273	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619281	37619281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0076527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			981	144	418	0	ENST00000447079.4:c.957C>G	p.Tyr319Ter	p.Y319*	ENST00000447079	NM_015083.1	319	taC/taG																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619187	37619187	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			787	498	455	0	ENST00000447079.4:c.863del	p.Ser288ThrfsTer50	p.S288Tfs*50	ENST00000447079	NM_015083.1	288	aGc/ac																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748060	41748060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1256766962		P-0076527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	24	98	0	ENST00000226382.2:c.709G>A	p.Gly237Ser	p.G237S	ENST00000226382	NM_003924.3	237	Ggc/Agc																																																																															
CTR9	9646	MSKCC	GRCh37	11	10774231	10774231	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	27	302	0	ENST00000361367.2:c.58G>C	p.Asp20His	p.D20H	ENST00000361367	NM_014633.3	20	Gac/Cac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0076542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	205	298	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0076542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	297	419	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579408	7579430	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGCCAGGAGGGGGCTGGTG	CAGGGGCCAGGAGGGGGCTGGTG	-	rs886041861		P-0076542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	251	515	0	ENST00000269305.4:c.257_279del	p.Ala86ValfsTer55	p.A86Vfs*55	ENST00000269305	NM_001126112.2	86	gCACCAGCCCCCTCCTGGCCCCTG/g																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711895	89711895	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	73	327	0	ENST00000371953.3:c.513G>C	p.Gln171His	p.Q171H	ENST00000371953	NM_000314.4	171	caG/caC																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212240	36212240	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	36	489	0	ENST00000222270.7:c.1991C>T	p.Ser664Leu	p.S664L	ENST00000222270	NM_014727.1	664	tCg/tTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56174806	56174806	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0076542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	40	317	0	ENST00000399503.3:c.1966-1G>A		p.X656_splice	ENST00000399503	NM_005921.1	656																																																																																
INSR	3643	MSKCC	GRCh37	19	7267629	7267629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	96	416	0	ENST00000302850.5:c.379C>T	p.His127Tyr	p.H127Y	ENST00000302850	NM_000208.2	127	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0076543-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			28	430	441	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
RB1	5925	MSKCC	GRCh37	13	48947540	48947540	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0076543-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			28	665	260	0	ENST00000267163.4:c.1128-1G>C		p.X376_splice	ENST00000267163	NM_000321.2	376																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139411785	139411806	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGCTGCTGGCACACTCGTCT	GGGGCTGCTGGCACACTCGTCT	-			P-0076543-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	19	282	0	ENST00000277541.6:c.1473_1494del	p.Asp492AlafsTer132	p.D492Afs*132	ENST00000277541	NM_017617.3	491	acAGACGAGTGTGCCAGCAGCCCC/ac																																																																															
DICER1	23405	MSKCC	GRCh37	14	95590541	95590542	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0076543-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	207	317	0	ENST00000343455.3:c.1367_1368insAT	p.Leu457SerfsTer2	p.L457Sfs*2	ENST00000343455	NM_177438.2	456	gtc/gtATc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182520	99182520	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076543-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	327	329	0	ENST00000074304.5:c.2323C>G	p.Pro775Ala	p.P775A	ENST00000074304	NM_001134224.1	775	Ccg/Gcg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361200	66361216	+	frameshift_variant	Frame_Shift_Del	DEL	AGGTGGACATTTGCCGC	AGGTGGACATTTGCCGC	-			P-0076543-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			55	427	373	0	ENST00000273854.3:c.956_972del	p.Cys319SerfsTer6	p.C319Sfs*6	ENST00000273854	NM_004439.5	319	tGCGGCAAATGTCCACCT/t																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711913	89712039	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTATAGCTACCTGTTAAAGAATCATCTGGATTATAGACCAGTGGCACTGTTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCGGAACTTGCAGTAAGTGCTTGAAATTCTCATCC	TTATAGCTACCTGTTAAAGAATCATCTGGATTATAGACCAGTGGCACTGTTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCGGAACTTGCAGTAAGTGCTTGAAATTCTCATCC	-			P-0076543-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			23	347	273	0	ENST00000371953.3:c.533_634+25del		p.X178_splice	ENST00000371953	NM_000314.4	178																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49427255	49427256	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	AG			P-0076543-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	235	433	0	ENST00000301067.7:c.11232_11233delinsCT	p.Gln3744_Gln3745delinsHisTer	p.Q3744_Q3745delinsH*	ENST00000301067	NM_003482.3	3744	caGCag/caCTag																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870942	12870942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076545-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	64	455	0	ENST00000228872.4:c.169C>T	p.Gln57Ter	p.Q57*	ENST00000228872	NM_004064.3	57	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076545-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	28	300	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99149894	99149894	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368448330		P-0076545-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	64	486	0	ENST00000074304.5:c.206C>T	p.Ala69Val	p.A69V	ENST00000074304	NM_001134224.1	69	gCg/gTg																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38787909	38787909	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1057518166		P-0076545-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	34	340	0	ENST00000348513.6:c.751C>T	p.Arg251Ter	p.R251*	ENST00000348513	NM_003079.4	251	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492690	56492691	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATTAATTTT			P-0076545-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	39	433	0	ENST00000407977.2:c.240_248dup	p.Leu82_Met83insIleLysLeu	p.L82_M83insIKL	ENST00000407977		83	atg/atAAAATTAATg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256006	16256006	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs74054883		P-0076551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	91	391	0	ENST00000375759.3:c.3271C>G	p.Leu1091Val	p.L1091V	ENST00000375759	NM_015001.2	1091	Cta/Gta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	38	241	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0076551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	57	266	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0076551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	18	328	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485983	8485983	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	39	386	0	ENST00000356435.5:c.2834C>A	p.Ala945Glu	p.A945E	ENST00000356435		945	gCa/gAa																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748031	72748031	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	69	331	0	ENST00000357731.5:c.147G>T	p.Met49Ile	p.M49I	ENST00000357731	NM_173808.2	49	atG/atT																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30099977	30099977	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	63	291	0	ENST00000331968.5:c.1643C>G	p.Ser548Cys	p.S548C	ENST00000331968	NM_002742.2	548	tCc/tGc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15295222	15295222	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs142405648		P-0076551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	82	336	0	ENST00000263388.2:c.2450C>G	p.Pro817Arg	p.P817R	ENST00000263388	NM_000435.2	817	cCc/cGc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303028	15303028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	77	424	0	ENST00000263388.2:c.422G>T	p.Arg141Leu	p.R141L	ENST00000263388	NM_000435.2	141	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0076552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			20	68	430	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0076552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			26	14	368	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	71	333	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992630	72992630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	15	473	0	ENST00000268489.5:c.1415C>A	p.Ala472Glu	p.A472E	ENST00000268489	NM_006885.3	472	gCg/gAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604773	48604773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			14	19	381	0	ENST00000342988.3:c.1595C>A	p.Ala532Asp	p.A532D	ENST00000342988	NM_005359.5	532	gCc/gAc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745539	162745539	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			26	21	433	0	ENST00000367921.3:c.1954A>G	p.Met652Val	p.M652V	ENST00000367921	NM_006182.2	652	Atg/Gtg																																																																															
SMO	6608	MSKCC	GRCh37	7	128845479	128845479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	24	408	0	ENST00000249373.3:c.776C>T	p.Ser259Leu	p.S259L	ENST00000249373	NM_005631.4	259	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112162945	112162945	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs1114167599		P-0076552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			18	13	248	0	ENST00000257430.4:c.1548+1G>T		p.X516_splice	ENST00000257430	NM_000038.5	516																																																																																
BAP1	8314	MSKCC	GRCh37	3	52436335	52436335	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776746400		P-0076552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	10	401	1	ENST00000460680.1:c.2159G>A	p.Arg720His	p.R720H	ENST00000460680	NM_004656.3	720	cGc/cAc																																																																															
CARM1	10498	MSKCC	GRCh37	19	10982407	10982407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	10	106	0	ENST00000327064.4:c.29C>T	p.Pro10Leu	p.P10L	ENST00000327064	NM_199141.1	10	cCg/cTg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710722	117710722	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			38	19	456	0	ENST00000368508.3:c.1550T>G	p.Ile517Ser	p.I517S	ENST00000368508	NM_002944.2	517	aTt/aGt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978333	2978333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	10	378	0	ENST00000396946.4:c.997G>A	p.Ala333Thr	p.A333T	ENST00000396946	NM_032415.4	333	Gca/Aca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653805	89653805	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs876659443		P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	101	276	0	ENST00000371953.3:c.103A>G	p.Met35Val	p.M35V	ENST00000371953	NM_000314.4	35	Atg/Gtg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56491645	56491645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	72	447	0	ENST00000267101.3:c.2537G>T	p.Ser846Ile	p.S846I	ENST00000267101	NM_001982.3	846	aGt/aTt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954022	32954023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1305653361		P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	220	456	0	ENST00000380152.3:c.9097dup	p.Thr3033AsnfsTer11	p.T3033Nfs*11	ENST00000380152		3030	aca/acAa																																																																															
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1023835002		P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	8	412	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																															
B2M	567	MSKCC	GRCh37	15	45003773	45003773	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	28	406	0	ENST00000558401.1:c.29T>G	p.Leu10Arg	p.L10R	ENST00000558401	NM_004048.2	10	cTc/cGc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	83	458	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024013	31024013	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs75887545		P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	65	529	0	ENST00000375687.4:c.3498C>G	p.Ser1166Arg	p.S1166R	ENST00000375687	NM_015338.5	1166	agC/agG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936093	178936093	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913275		P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	70	241	0	ENST00000263967.3:c.1635G>C	p.Glu545Asp	p.E545D	ENST00000263967	NM_006218.2	545	gaG/gaC																																																																															
PREX2	80243	MSKCC	GRCh37	8	68939479	68939479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778971988		P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	121	327	0	ENST00000288368.4:c.464G>A	p.Arg155Gln	p.R155Q	ENST00000288368	NM_024870.2	155	cGg/cAg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262281	16262281	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	T	T	GGTATAG			P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	51	465	0	ENST00000375759.3:c.9546delinsGGTATAG	p.Ser3182_Glu3183insValTer	p.S3182_E3183insV*	ENST00000375759	NM_015001.2	3182	tcT/tcGGTATAG																																																																															
RET	5979	MSKCC	GRCh37	10	43623560	43623560	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	55	369	0	ENST00000355710.3:c.3188G>C	p.Gly1063Ala	p.G1063A	ENST00000355710	NM_020975.4	1063	gGc/gCc																																																																															
MGA	23269	MSKCC	GRCh37	15	41961756	41961756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	38	473	0	ENST00000219905.7:c.664G>A	p.Gly222Ser	p.G222S	ENST00000219905	NM_001164273.1	222	Ggt/Agt																																																																															
B2M	567	MSKCC	GRCh37	15	45007728	45007749	+	frameshift_variant	Frame_Shift_Del	DEL	TTACTGAAGAATGGAGAGAGAA	TTACTGAAGAATGGAGAGAGAA	-			P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	24	396	0	ENST00000558401.1:c.177_198del	p.Leu60LysfsTer36	p.L60Kfs*36	ENST00000558401	NM_004048.2	59	TTACTGAAGAATGGAGAGAGAAtt/tt																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51535030	51535044	+	inframe_deletion	In_Frame_Del	DEL	GGCATGGTGGCAGCA	GGCATGGTGGCAGCA	-			P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	113	433	0	ENST00000260433.2:c.66_80del	p.Ala23_Pro27del	p.A23_P27del	ENST00000260433		22	ccTGCTGCCACCATGCCa/cca																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029576	14029576	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	70	365	0	ENST00000311895.7:c.1787C>G	p.Ala596Gly	p.A596G	ENST00000311895	NM_005236.2	596	gCg/gGg																																																																															
NF1	4763	MSKCC	GRCh37	17	29667537	29667537	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	44	407	0	ENST00000358273.4:c.6936C>A	p.His2312Gln	p.H2312Q	ENST00000358273	NM_001042492.2	2312	caC/caA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577582	7577722	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGGATGGTGGTACAGTCAGAGCCAACCTAGGAGATAACACAGGCCCAAGATGAGGCCAGTGCGCCTTGGGGAGACCTGTGGCAAGCAGGGGAGGCCTTTTTTTTTTTTTTTTGAGATGGAATCTCGCTCTGTCGCCCAGG	GTGGATGGTGGTACAGTCAGAGCCAACCTAGGAGATAACACAGGCCCAAGATGAGGCCAGTGCGCCTTGGGGAGACCTGTGGCAAGCAGGGGAGGCCTTTTTTTTTTTTTTTTGAGATGGAATCTCGCTCTGTCGCCCAGG	-			P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	35	428	0	ENST00000269305.4:c.673-114_699del		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
JAK3	3718	MSKCC	GRCh37	19	17953093	17953137	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGCCCCGCCCAGCGGGGGAGTCCGCCCTCACCTCCTGTTCTCCC	TGGCCCCGCCCAGCGGGGGAGTCCGCCCTCACCTCCTGTTCTCCC	-			P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	17	235	0	ENST00000458235.1:c.849_861+32del		p.X283_splice	ENST00000458235	NM_000215.3	283																																																																																
CHEK2	11200	MSKCC	GRCh37	22	29137710	29137791	+	splice_donor_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	GGATTCGAACCACCAAACACCCAACAGAAGTTCCCCATATGACTCACCGCGTGAGCCCACCTGGAGCCGCACACTCTCCGCA	GGATTCGAACCACCAAACACCCAACAGAAGTTCCCCATATGACTCACCGCGTGAGCCCACCTGGAGCCGCACACTCTCCGCA	-			P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	33	256	0	ENST00000328354.6:c.-41_-7+47del		p.X14_splice	ENST00000328354	NM_007194.3	14																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67590429	67590506	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GTGCCAGACCCAAGAGCGGTACAGCAAAGAATACATAGAAAAGTTTAAACGTGAAGGCAATGAGAAAGAAATACAAAG	GTGCCAGACCCAAGAGCGGTACAGCAAAGAATACATAGAAAAGTTTAAACGTGAAGGCAATGAGAAAGAAATACAAAG	-			P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	44	351	0	ENST00000274335.5:c.1493_1568+2del		p.QCQTQERYSKEYIEKFKREGNEKEIQRdel	ENST00000274335		497	caGTGCCAGACCCAAGAGCGGTACAGCAAAGAATACATAGAAAAGTTTAAACGTGAAGGCAATGAGAAAGAAATACAAAGg/cag																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997802	149997802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	85	358	0	ENST00000253339.5:c.2665G>T	p.Asp889Tyr	p.D889Y	ENST00000253339		889	Gac/Tac																																																																															
BRAF	673	MSKCC	GRCh37	7	140624401	140624441	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCGGCGCCGGCGCCGGCGCCGGCCTCGGGCTCCATGTCC	CCGCGGCGCCGGCGCCGGCGCCGGCCTCGGGCTCCATGTCC	-			P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	74	297	0	ENST00000288602.6:c.63_103del	p.Asp22LeufsTer20	p.D22Lfs*20	ENST00000288602	NM_004333.4	21	ggGGACATGGAGCCCGAGGCCGGCGCCGGCGCCGGCGCCGCGGcc/ggcc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878231	151878231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	212	482	0	ENST00000262189.6:c.6714G>A	p.Met2238Ile	p.M2238I	ENST00000262189	NM_170606.2	2238	atG/atA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55231461	55231461	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	79	380	0	ENST00000275493.2:c.1667T>C	p.Ile556Thr	p.I556T	ENST00000275493	NM_005228.3	556	aTa/aCa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146080	38146080	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	75	431	0	ENST00000317025.8:c.3426A>T	p.Arg1142Ser	p.R1142S	ENST00000317025	NM_023034.1	1142	agA/agT																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399228	139399228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	125	442	0	ENST00000277541.6:c.4915G>T	p.Ala1639Ser	p.A1639S	ENST00000277541	NM_017617.3	1639	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0076562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	407	447	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022687	12022687	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1047383225		P-0076562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	386	627	0	ENST00000396373.4:c.793G>A	p.Val265Met	p.V265M	ENST00000396373	NM_001987.4	265	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577148	7577148	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	340	414	0	ENST00000269305.4:c.790C>G	p.Leu264Val	p.L264V	ENST00000269305	NM_001126112.2	264	Cta/Gta																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271393	26271393	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	432	616	0	ENST00000305910.3:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000305910	NM_003534.2	74	Gaa/Caa																																																																															
RB1	5925	MSKCC	GRCh37	13	49030355	49030370	+	frameshift_variant	Frame_Shift_Del	DEL	AAGATCTCCAAAGAAA	AAGATCTCCAAAGAAA	-			P-0076562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			67	188	357	0	ENST00000267163.4:c.1832_1847del	p.Arg611LysfsTer7	p.R611Kfs*7	ENST00000267163	NM_000321.2	610	gtAAGATCTCCAAAGAAA/gt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900497	3900497	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	373	532	1	ENST00000262367.5:c.599A>G	p.Gln200Arg	p.Q200R	ENST00000262367	NM_004380.2	200	cAg/cGg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243668612	243668612	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1197744936		P-0076562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	322	411	0	ENST00000263826.5:c.1379T>C	p.Met460Thr	p.M460T	ENST00000263826	NM_005465.4	460	aTg/aCg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0076566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	78	404	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372388	55372388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1437921769		P-0076566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	141	466	0	ENST00000297316.4:c.1078C>T	p.Arg360Cys	p.R360C	ENST00000297316	NM_022454.3	360	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578515	7578515	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1212996409		P-0076566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	131	435	0	ENST00000269305.4:c.415A>G	p.Lys139Glu	p.K139E	ENST00000269305	NM_001126112.2	139	Aag/Gag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	127	278	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971002	21971003	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0076566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	109	442	0	ENST00000304494.5:c.355dup	p.Glu119GlyfsTer23	p.E119Gfs*23	ENST00000304494	NM_000077.4	119	gag/gGag																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074175	8074175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	133	414	0	ENST00000377482.5:c.484C>T	p.Leu162Phe	p.L162F	ENST00000377482	NM_018948.3	162	Ctc/Ttc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437570	56437570	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	212	428	0	ENST00000407977.2:c.892T>A	p.Cys298Ser	p.C298S	ENST00000407977		298	Tgt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0076570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	129	464	1	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170334	32170334	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761986491		P-0076570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	71	471	0	ENST00000375023.3:c.3274G>A	p.Gly1092Ser	p.G1092S	ENST00000375023	NM_004557.3	1092	Ggc/Agc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1953917	1953917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	71	456	0	ENST00000382895.3:c.2096G>A	p.Arg699Gln	p.R699Q	ENST00000382895	NM_133330.2	699	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	167	455	0	ENST00000269305.4:c.337T>A	p.Phe113Ile	p.F113I	ENST00000269305	NM_001126112.2	113	Ttc/Atc																																																																															
NF1	4763	MSKCC	GRCh37	17	29553499	29553505	+	frameshift_variant	Frame_Shift_Del	DEL	CCCAGAC	CCCAGAC	-			P-0076570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	60	462	0	ENST00000358273.4:c.2049_2055del	p.Gln684AsnfsTer2	p.Q684Nfs*2	ENST00000358273	NM_001042492.2	683	gCCCAGACc/gc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202752	16202752	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753725044		P-0076570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	34	431	0	ENST00000375759.3:c.460C>T	p.Arg154Trp	p.R154W	ENST00000375759	NM_015001.2	154	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112174189	112174189	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	41	437	0	ENST00000257430.4:c.2898del	p.Ser966ArgfsTer14	p.S966Rfs*14	ENST00000257430	NM_000038.5	966	agT/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0076572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	62	465	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0076572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	60	279	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0076572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	73	413	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	66	325	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554665	63554665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	83	551	0	ENST00000307078.5:c.74C>T	p.Pro25Leu	p.P25L	ENST00000307078	NM_004655.3	25	cCa/cTa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911587	134911587	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	65	464	0	ENST00000398015.3:c.2052G>C	p.Glu684Asp	p.E684D	ENST00000398015	NM_004441.4	684	gaG/gaC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0076573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	61	313	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0076573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	96	370	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280058	66280058	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	74	341	0	ENST00000273854.3:c.1631C>A	p.Thr544Lys	p.T544K	ENST00000273854	NM_004439.5	544	aCa/aAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41818293	41818293	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	89	281	0	ENST00000373198.4:c.81C>A	p.Ser27Arg	p.S27R	ENST00000373198	NM_133170.3	27	agC/agA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421909	49421909	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0076573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	100	366	0	ENST00000301067.7:c.14398A>C	p.Met4800Leu	p.M4800L	ENST00000301067	NM_003482.3	4800	Atg/Ctg																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84403319	84403319	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	56	266	1	ENST00000321945.7:c.166G>T	p.Val56Phe	p.V56F	ENST00000321945	NM_139076.2	56	Gtt/Ttt																																																																															
ALK	238	MSKCC	GRCh37	2	29606615	29606615	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	60	330	0	ENST00000389048.3:c.1265T>A	p.Leu422Gln	p.L422Q	ENST00000389048	NM_004304.4	422	cTg/cAg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2086950	2086950	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	202	346	0	ENST00000349721.2:c.2648C>G	p.Pro883Arg	p.P883R	ENST00000349721	NM_003070.3	883	cCg/cGg																																																																															
CASP8	841	MSKCC	GRCh37	2	202149808	202149808	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	107	414	0	ENST00000358485.4:c.1249C>A	p.Gln417Lys	p.Q417K	ENST00000358485	NM_001080125.1	417	Cag/Aag																																																																															
PALB2	79728	MSKCC	GRCh37	16	23619209	23619209	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	86	292	1	ENST00000261584.4:c.3326G>C	p.Cys1109Ser	p.C1109S	ENST00000261584	NM_024675.3	1109	tGt/tCt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562506	95562506	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			770	89	377	0	ENST00000343455.3:c.4751G>C	p.Cys1584Ser	p.C1584S	ENST00000343455	NM_177438.2	1584	tGt/tCt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540985	187540985	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	98	414	0	ENST00000441802.2:c.6755T>C	p.Leu2252Pro	p.L2252P	ENST00000441802	NM_005245.3	2252	cTg/cCg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609405	81609405	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	63	378	0	ENST00000298171.2:c.1003G>T	p.Val335Phe	p.V335F	ENST00000298171	NM_000369.2	335	Gtt/Ttt																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281175	49281175	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	71	364	0	ENST00000282018.3:c.222C>A	p.Asn74Lys	p.N74K	ENST00000282018	NM_020377.2	74	aaC/aaA																																																																															
FANCA	2175	MSKCC	GRCh37	16	89849465	89849465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	93	344	0	ENST00000389301.3:c.1516C>T	p.Leu506Phe	p.L506F	ENST00000389301	NM_000135.2	506	Ctc/Ttc																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137524802	137524803	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	A			P-0076573-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	38	336	0	ENST00000367739.4:c.566_567delinsT	p.Thr189IlefsTer14	p.T189Ifs*14	ENST00000367739	NM_000416.2	189	aCG/aT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0076576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			41	96	426	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28578190	28578190	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0076576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	31	422	0	ENST00000241453.7:c.2981A>G	p.Ter994TrpextTer25	p.*994Wext*25	ENST00000241453	NM_004119.2	994	tAg/tGg																																																																															
NF1	4763	MSKCC	GRCh37	17	29559845	29559845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	41	404	0	ENST00000358273.4:c.3442G>T	p.Ala1148Ser	p.A1148S	ENST00000358273	NM_001042492.2	1148	Gca/Tca																																																																															
CIC	23152	MSKCC	GRCh37	19	42797807	42797807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	69	379	0	ENST00000575354.2:c.3859G>A	p.Gly1287Arg	p.G1287R	ENST00000575354	NM_015125.3	1287	Ggg/Agg																																																																															
APC	324	MSKCC	GRCh37	5	112116600	112116600	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0076576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			31	46	282	4	ENST00000257430.4:c.645+1del		p.Q215fs	ENST00000257430	NM_000038.5	215	caG/ca																																																																															
BCOR	54880	MSKCC	GRCh37	X	39911453	39911453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	65	364	5	ENST00000378444.4:c.5177T>C	p.Leu1726Pro	p.L1726P	ENST00000378444	NM_001123385.1	1726	cTg/cCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0076591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	179	340	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457696	67457696	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772034969		P-0076591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			820	122	445	1	ENST00000327367.4:c.506G>A	p.Gly169Asp	p.G169D	ENST00000327367	NM_005902.3	169	gGc/gAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111493	8111494	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0076591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			708	402	393	0	ENST00000346208.3:c.981_982del	p.Trp328GlufsTer23	p.W328Efs*23	ENST00000346208		327	CTc/c																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151866330	151866330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	75	242	0	ENST00000262189.6:c.9458G>A	p.Gly3153Asp	p.G3153D	ENST00000262189	NM_170606.2	3153	gGc/gAc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30194816	30194816	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200796569		P-0076591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	87	380	0	ENST00000331968.5:c.329C>T	p.Ser110Phe	p.S110F	ENST00000331968	NM_002742.2	110	tCt/tTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0076592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	121	348	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0076592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	122	318	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5215553	5215553	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1394993665		P-0076592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	129	321	2	ENST00000357368.4:c.4150C>T	p.Arg1384Trp	p.R1384W	ENST00000357368	NM_002850.3	1384	Cgg/Tgg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56174815	56174830	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAGCCATGCTGGTA	GAGAGCCATGCTGGTA	-			P-0076592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	108	254	0	ENST00000399503.3:c.1974_1989del	p.Leu658PhefsTer8	p.L658Ffs*8	ENST00000399503	NM_005921.1	658	ttGAGAGCCATGCTGGTA/tt																																																																															
CDH1	999	MSKCC	GRCh37	16	68857507	68857508	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0076592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	105	286	0	ENST00000261769.5:c.2144dup	p.Gly716ArgfsTer32	p.G716Rfs*32	ENST00000261769	NM_004360.3	714	-/G																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9776616	9776616	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762485999		P-0076597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	52	458	2	ENST00000377346.4:c.719C>T	p.Thr240Met	p.T240M	ENST00000377346	NM_005026.3	240	aCg/aTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10247809	10247809	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1368186167		P-0076597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	47	524	0	ENST00000340748.4:c.4393G>A	p.Gly1465Ser	p.G1465S	ENST00000340748		1465	Ggc/Agc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149441059	149441059	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	184	282	0	ENST00000286301.3:c.1853T>A	p.Leu618Gln	p.L618Q	ENST00000286301	NM_005211.3	618	cTg/cAg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396506	396506	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0076597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	411	543	0	ENST00000262320.3:c.520A>T	p.Lys174Ter	p.K174*	ENST00000262320	NM_003502.3	174	Aag/Tag																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957800	1957800	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			841	78	437	0	ENST00000382895.3:c.2766C>G	p.Phe922Leu	p.F922L	ENST00000382895	NM_133330.2	922	ttC/ttG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428392	49428392	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			913	124	502	0	ENST00000301067.7:c.10413G>C	p.Gln3471His	p.Q3471H	ENST00000301067	NM_003482.3	3471	caG/caC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845883	151845883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	86	492	0	ENST00000262189.6:c.13129G>A	p.Asp4377Asn	p.D4377N	ENST00000262189	NM_170606.2	4377	Gat/Aat																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272176	15272176	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	39	539	0	ENST00000263388.2:c.6263G>T	p.Cys2088Phe	p.C2088F	ENST00000263388	NM_000435.2	2088	tGc/tTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0076601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	221	324	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0076601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	305	488	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372193	55372193	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753081636		P-0076601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	227	537	0	ENST00000297316.4:c.883G>A	p.Val295Met	p.V295M	ENST00000297316	NM_022454.3	295	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112174973	112174973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	190	343	0	ENST00000257430.4:c.3682C>T	p.Gln1228Ter	p.Q1228*	ENST00000257430	NM_000038.5	1228	Cag/Tag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852453	63852453	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1343745122		P-0076601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	97	408	0	ENST00000279873.7:c.3231C>G	p.Ile1077Met	p.I1077M	ENST00000279873	NM_032199.2	1077	atC/atG																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272002	15272002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770739669		P-0076601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	77	547	0	ENST00000263388.2:c.6437C>T	p.Ala2146Val	p.A2146V	ENST00000263388	NM_000435.2	2146	gCg/gTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0076609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	462	232	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724847	43724847	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	180	240	0	ENST00000382044.4:c.3220C>G	p.Gln1074Glu	p.Q1074E	ENST00000382044	NM_001141980.1	1074	Caa/Gaa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724624	162724624	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	148	215	0	ENST00000367921.3:c.396G>C	p.Trp132Cys	p.W132C	ENST00000367921	NM_006182.2	132	tgG/tgC																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871999	35872000	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGGACACCAAAAGCTCCACGATGCCCAGGTAGCCATGGATAGAGGCTAAGT			P-0076609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	171	250	0	ENST00000216797.5:c.563_613dup	p.Ser204_Leu205insTyrLeuAlaSerIleHisGlyTyrLeuGlyIleValGluLeuLeuValSer	p.S204_L205insYLASIHGYLGIVELLVS	ENST00000216797	NM_020529.2	205	ttg/tACTTAGCCTCTATCCATGGCTACCTGGGCATCGTGGAGCTTTTGGTGTCCTtg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319843	8319843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	157	193	1	ENST00000356435.5:c.5658G>A	p.Met1886Ile	p.M1886I	ENST00000356435		1886	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577157	7577157	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs1060501207		P-0076610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	128	365	0	ENST00000269305.4:c.783-2A>G		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602412	10602412	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	86	436	0	ENST00000171111.5:c.1166A>T	p.Asp389Val	p.D389V	ENST00000171111	NM_203500.1	389	gAc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0076610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	62	250	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112175678	112175678	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0076610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	95	425	0	ENST00000257430.4:c.4387A>T	p.Arg1463Ter	p.R1463*	ENST00000257430	NM_000038.5	1463	Aga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1223040	1223041	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0076610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	100	421	0	ENST00000326873.7:c.977_978del	p.Pro326ArgfsTer33	p.P326Rfs*33	ENST00000326873	NM_000455.4	326	cCA/c																																																																															
MED12	9968	MSKCC	GRCh37	X	70356264	70356264	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	89	348	0	ENST00000374080.3:c.5159A>T	p.Gln1720Leu	p.Q1720L	ENST00000374080		1720	cAg/cTg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59853875	59853876	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0076610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	73	302	0	ENST00000259008.2:c.1983_1984del	p.Ala662TyrfsTer6	p.A662Yfs*6	ENST00000259008	NM_032043.2	661	tgTGct/tgct																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0076612-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	202	221	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68844109	68844110	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0076612-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	77	242	0	ENST00000261769.5:c.698dup	p.His233GlnfsTer11	p.H233Qfs*11	ENST00000261769	NM_004360.3	233	cac/cAac																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171718	36171718	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076612-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	143	284	0	ENST00000300305.3:c.847C>T	p.Gln283Ter	p.Q283*	ENST00000300305		283	Cag/Tag																																																																															
RET	5979	MSKCC	GRCh37	10	43623601	43623601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076612-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	28	233	0	ENST00000355710.3:c.3229C>T	p.Leu1077Phe	p.L1077F	ENST00000355710	NM_020975.4	1077	Ctc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519999		P-0076613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	96	258	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221947	1221947	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0076613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	98	246	0	ENST00000326873.7:c.863-1G>T		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52678783	52678784	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0076613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	54	169	0	ENST00000394830.3:c.835dup	p.Ile279AsnfsTer8	p.I279Nfs*8	ENST00000394830	NM_018313.4	279	ata/aAta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			474	10	266	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31376732	31376732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			451	24	406	0	ENST00000328111.2:c.727G>A	p.Val243Met	p.V243M	ENST00000328111	NM_006892.3	243	Gtg/Atg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913500		P-0076625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	44	406	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88672037	88672037	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1053423400		P-0076625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	23	137	0	ENST00000372037.3:c.571C>T	p.Arg191Cys	p.R191C	ENST00000372037	NM_004329.2	191	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0076625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	50	326	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127300	55127300	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs780747709		P-0076625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	36	417	0	ENST00000257290.5:c.88A>G	p.Ile30Val	p.I30V	ENST00000257290	NM_006206.4	30	Atc/Gtc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250517	110250517	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs775735430		P-0076625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	32	230	0	ENST00000374672.4:c.158G>T	p.Arg53Leu	p.R53L	ENST00000374672	NM_004235.4	53	cGa/cTa																																																																															
BCL6	604	MSKCC	GRCh37	3	187444588	187444588	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0076625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	35	329	0	ENST00000232014.4:c.1639A>C	p.Lys547Gln	p.K547Q	ENST00000232014	NM_001130845.1	547	Aag/Cag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045027	47045071	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGGTAACAGCGGATGGTTGGCAGGGCATGCTGGGGCCTGGCCCA	AAGGTAACAGCGGATGGTTGGCAGGGCATGCTGGGGCCTGGCCCA	-			P-0076625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	48	199	0	ENST00000329236.7:c.2119_2121+42del		p.X707_splice	ENST00000329236	NM_001204466.1	707																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0076627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	13	230	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0076627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	54	358	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266611	198266611	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs755415626		P-0076627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	37	404	0	ENST00000335508.6:c.2225G>A	p.Gly742Asp	p.G742D	ENST00000335508	NM_012433.2	742	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	36	293	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039290	47039290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	57	232	0	ENST00000329236.7:c.682C>T	p.Arg228Cys	p.R228C	ENST00000329236	NM_001204466.1	228	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112173964	112173965	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0076627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	32	406	1	ENST00000257430.4:c.2673_2674delinsTT	p.Met891_Glu892delinsIleTer	p.M891_E892delinsI*	ENST00000257430	NM_000038.5	891	atGGaa/atTTaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69058572	69058572	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	22	366	0	ENST00000288368.4:c.4216G>C	p.Val1406Leu	p.V1406L	ENST00000288368	NM_024870.2	1406	Gtt/Ctt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398289	25398290	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA	rs606231202		P-0076627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	16	279	0	ENST00000256078.4:c.27_29dup	p.Gly10dup	p.G10dup	ENST00000256078	NM_033360.2	10	gga/ggTGGa																																																																															
ATR	545	MSKCC	GRCh37	3	142215208	142215208	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	17	175	0	ENST00000350721.4:c.5893T>C	p.Ser1965Pro	p.S1965P	ENST00000350721	NM_001184.3	1965	Tcc/Ccc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981523	201981523	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1217001821		P-0076627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	51	396	0	ENST00000359651.3:c.437A>G	p.Asp146Gly	p.D146G	ENST00000359651		146	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0076628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	285	366	14	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120085	70120085	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	111	241	9	ENST00000245479.2:c.1087C>T	p.Gln363Ter	p.Q363*	ENST00000245479	NM_000346.3	363	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0076628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	97	250	1	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0076628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	71	345	3	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047963	180047963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	123	381	6	ENST00000261937.6:c.2212G>A	p.Val738Met	p.V738M	ENST00000261937	NM_182925.4	738	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	143	244	4	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47425482	47425482	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	154	355	4	ENST00000404338.3:c.3550G>T	p.Gly1184Trp	p.G1184W	ENST00000404338	NM_004491.4	1184	Ggg/Tgg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111033	193111033	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	95	296	2	ENST00000367435.3:c.566T>C	p.Ile189Thr	p.I189T	ENST00000367435	NM_024529.4	189	aTt/aCt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492743	56492743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	100	382	4	ENST00000407977.2:c.196G>A	p.Glu66Lys	p.E66K	ENST00000407977		66	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242440	55242440	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	72	235	6	ENST00000275493.2:c.2210A>G	p.Lys737Arg	p.K737R	ENST00000275493	NM_005228.3	737	aAa/aGa																																																																															
MSH3	4437	MSKCC	GRCh37	5	80063788	80063788	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	70	265	1	ENST00000265081.6:c.1933T>A	p.Leu645Ile	p.L645I	ENST00000265081	NM_002439.4	645	Tta/Ata																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992630	72992630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	21	390	1	ENST00000268489.5:c.1415C>A	p.Ala472Glu	p.A472E	ENST00000268489	NM_006885.3	472	gCg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112175643	112175643	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			34	15	450	0	ENST00000257430.4:c.4353del	p.Val1452TyrfsTer21	p.V1452Yfs*21	ENST00000257430	NM_000038.5	1451	gAa/ga																																																																															
RAC2	5880	MSKCC	GRCh37	22	37627979	37627979	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780585104		P-0076629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	11	327	1	ENST00000249071.6:c.281G>A	p.Arg94His	p.R94H	ENST00000249071	NM_002872.4	94	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			57	8	291	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843644	156843644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	17	491	0	ENST00000524377.1:c.1070G>A	p.Gly357Asp	p.G357D	ENST00000524377	NM_002529.3	357	gGc/gAc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131915113	131915113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			37	14	320	0	ENST00000265335.6:c.470G>T	p.Cys157Phe	p.C157F	ENST00000265335		157	tGt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579362	7579371	+	protein_altering_variant	In_Frame_Del	DEL	AACCGTAGCT	AACCGTAGCT	C			P-0076629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			51	31	456	0	ENST00000269305.4:c.316_325delinsG	p.Ser106_Phe109delinsVal	p.S106_F109delinsV	ENST00000269305	NM_001126112.2	106	AGCTACGGTTtc/Gtc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			2019	135	222	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0076637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	286	287	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564516	86564517	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0076637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	188	202	0	ENST00000274376.6:c.249_250del	p.Ala84TrpfsTer27	p.A84Wfs*27	ENST00000274376	NM_002890.2	83	gGA/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1202793339		P-0076639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	190	271	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
NF1	4763	MSKCC	GRCh37	17	29550520	29550520	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	21	180	0	ENST00000358273.4:c.1780A>C	p.Thr594Pro	p.T594P	ENST00000358273	NM_001042492.2	594	Aca/Cca																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129906	55129906	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	87	238	0	ENST00000257290.5:c.440T>A	p.Ile147Asn	p.I147N	ENST00000257290	NM_006206.4	147	aTt/aAt																																																																															
ERF	2077	MSKCC	GRCh37	19	42752748	42752748	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751301163		P-0076639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	100	172	0	ENST00000222329.4:c.1516G>A	p.Asp506Asn	p.D506N	ENST00000222329	NM_006494.2	506	Gat/Aat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878964	151878967	+	frameshift_variant	Frame_Shift_Del	DEL	GTTT	GTTT	-			P-0076639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	56	247	0	ENST00000262189.6:c.5978_5981del	p.Gln1993LeufsTer6	p.Q1993Lfs*6	ENST00000262189	NM_170606.2	1993	cAAACt/ct																																																																															
CUL3	8452	MSKCC	GRCh37	2	225360551	225360551	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0076639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	69	166	0	ENST00000264414.4:c.1840G>T	p.Glu614Ter	p.E614*	ENST00000264414	NM_003590.4	614	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0076647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	38	292	0	ENST00000269305.4:c.376-1G>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
EGFR	1956	MSKCC	GRCh37	7	55211080	55211080	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519828		P-0076647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	51	347	0	ENST00000275493.2:c.323G>A	p.Arg108Lys	p.R108K	ENST00000275493	NM_005228.3	108	aGa/aAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0076647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	38	330	1	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0076650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	8	278	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913273		P-0076650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	10	154	0	ENST00000263967.3:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000263967	NM_006218.2	542	Gaa/Caa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	20	229	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513354	106513354	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	26	301	0	ENST00000359195.3:c.2258C>A	p.Ser753Tyr	p.S753Y	ENST00000359195	NM_002649.2	753	tCt/tAt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022630	12022630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	27	431	0	ENST00000396373.4:c.736C>T	p.Pro246Ser	p.P246S	ENST00000396373	NM_001987.4	246	Cca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	153	323	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069059	5069060	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	110	295	0	ENST00000381652.3:c.1370dup	p.Asn457LysfsTer2	p.N457Kfs*2	ENST00000381652	NM_004972.3	455	aca/acAa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751386	57751386	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	71	315	0	ENST00000274289.3:c.1605G>C	p.Met535Ile	p.M535I	ENST00000274289	NM_006622.3	535	atG/atC																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641376	23641376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	162	396	0	ENST00000261584.4:c.2099C>T	p.Ser700Leu	p.S700L	ENST00000261584	NM_024675.3	700	tCa/tTa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500570	149500570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377442091		P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	86	421	0	ENST00000261799.4:c.2467G>A	p.Val823Ile	p.V823I	ENST00000261799	NM_002609.3	823	Gtc/Atc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429354	78429354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	112	343	0	ENST00000370768.2:c.1088G>A	p.Arg363Lys	p.R363K	ENST00000370768	NM_003902.3	363	aGa/aAa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740453	58740453	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765346414		P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	82	324	0	ENST00000305921.3:c.1358C>T	p.Ser453Leu	p.S453L	ENST00000305921	NM_003620.3	453	tCa/tTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	230	261	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982155	201982155	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	39	372	1	ENST00000359651.3:c.679T>G	p.Phe227Val	p.F227V	ENST00000359651		227	Ttc/Gtc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082646	16082646	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	31	119	0	ENST00000281043.3:c.460G>C	p.Ala154Pro	p.A154P	ENST00000281043	NM_005378.4	154	Gcc/Ccc																																																																															
KIT	3815	MSKCC	GRCh37	4	55569971	55569971	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	56	270	0	ENST00000288135.5:c.838G>T	p.Ala280Ser	p.A280S	ENST00000288135	NM_000222.2	280	Gcg/Tcg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146734	185146734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	254	392	0	ENST00000265026.3:c.365G>T	p.Arg122Met	p.R122M	ENST00000265026	NM_004721.4	122	aGg/aTg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52598090	52598090	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	134	281	0	ENST00000394830.3:c.3776T>A	p.Val1259Glu	p.V1259E	ENST00000394830	NM_018313.4	1259	gTa/gAa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31372601	31372601	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs748547514		P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	98	291	0	ENST00000328111.2:c.242G>C	p.Gly81Ala	p.G81A	ENST00000328111	NM_006892.3	81	gGc/gCc																																																																															
EP300	2033	MSKCC	GRCh37	22	41527439	41527440	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	111	293	1	ENST00000263253.7:c.1330_1331delinsTT	p.Gly444Leu	p.G444L	ENST00000263253	NM_001429.3	444	GGg/TTg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873708	35873708	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1394251315		P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	219	310	0	ENST00000303115.3:c.664C>A	p.Pro222Thr	p.P222T	ENST00000303115	NM_002185.3	222	Cca/Aca																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957867	1957867	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	145	341	0	ENST00000382895.3:c.2833G>T	p.Gly945Cys	p.G945C	ENST00000382895	NM_133330.2	945	Ggc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874416	151874416	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			723	92	378	0	ENST00000262189.6:c.8122G>T	p.Glu2708Ter	p.E2708*	ENST00000262189	NM_170606.2	2708	Gaa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874556	151874556	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			812	93	385	0	ENST00000262189.6:c.7982del	p.Pro2661LeufsTer17	p.P2661Lfs*17	ENST00000262189	NM_170606.2	2661	cCt/ct																																																																															
STAT3	6774	MSKCC	GRCh37	17	40481784	40481784	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1449703019		P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	138	274	0	ENST00000264657.5:c.1120G>T	p.Asp374Tyr	p.D374Y	ENST00000264657	NM_139276.2	374	Gac/Tac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499689	8499689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	147	397	0	ENST00000356435.5:c.2280G>T	p.Lys760Asn	p.K760N	ENST00000356435		760	aaG/aaT																																																																															
POLE	5426	MSKCC	GRCh37	12	133225517	133225517	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	121	284	0	ENST00000320574.5:c.4147A>T	p.Lys1383Ter	p.K1383*	ENST00000320574	NM_006231.2	1383	Aag/Tag																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39620685	39620685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	127	269	1	ENST00000262039.4:c.2083G>T	p.Asp695Tyr	p.D695Y	ENST00000262039	NM_002647.2	695	Gat/Tat																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46252786	46252787	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	52	242	0	ENST00000371998.3:c.217_218dup	p.Glu74ArgfsTer4	p.E74Rfs*4	ENST00000371998		72	tta/ttAAa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39249753	39249753	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	162	260	0	ENST00000402219.2:c.1816G>T	p.Val606Phe	p.V606F	ENST00000402219	NM_005633.3	606	Gtt/Ttt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022881	31022881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	132	436	0	ENST00000375687.4:c.2366G>T	p.Cys789Phe	p.C789F	ENST00000375687	NM_015338.5	789	tGt/tTt																																																																															
PARK2	5071	MSKCC	GRCh37	6	161781223	161781223	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	14	188	2	ENST00000366898.1:c.1182T>G	p.Asp394Glu	p.D394E	ENST00000366898	NM_004562.2	394	gaT/gaG																																																																															
ALK	238	MSKCC	GRCh37	2	29754906	29754906	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	77	420	0	ENST00000389048.3:c.1029G>T	p.Glu343Asp	p.E343D	ENST00000389048	NM_004304.4	343	gaG/gaT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0076655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	20	348	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0076655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	67	306	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	25	313	0	ENST00000269305.4:c.823T>G	p.Cys275Gly	p.C275G	ENST00000269305	NM_001126112.2	275	Tgt/Ggt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633110	3633110	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs569861974		P-0076655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	43	325	0	ENST00000294008.3:c.5141T>G	p.Leu1714Trp	p.L1714W	ENST00000294008	NM_032444.2	1714	tTg/tGg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67196029	67196029	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0076655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	11	113	1	ENST00000312629.5:c.13T>G	p.Phe5Val	p.F5V	ENST00000312629	NM_003952.2	5	Ttt/Gtt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076673-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			118	181	304	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380201	25380201	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076673-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			169	28	198	0	ENST00000256078.4:c.257A>G	p.Asn86Ser	p.N86S	ENST00000256078	NM_033360.2	86	aAt/aGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	TG			P-0076680-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			210	20	291	0	ENST00000256078.4:c.34_35delinsCA	p.Gly12His	p.G12H	ENST00000256078	NM_033360.2	12	GGt/CAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0076680-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			510	41	606	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118970	70118970	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076680-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			512	42	606	0	ENST00000245479.2:c.542del	p.Ser181TrpfsTer2	p.S181Wfs*2	ENST00000245479	NM_000346.3	181	tCg/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs876659675		P-0076684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	353	402	0	ENST00000269305.4:c.764T>G	p.Ile255Ser	p.I255S	ENST00000269305	NM_001126112.2	255	aTc/aGc																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56809902	56809902	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	57	327	0	ENST00000337432.4:c.1023C>G	p.Ile341Met	p.I341M	ENST00000337432	NM_058216.2	341	atC/atG																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880997	37880998	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TAT			P-0076684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	2867	523	0	ENST00000269571.5:c.2326_2327insTAT	p.Gly776delinsValCys	p.G776delinsVC	ENST00000269571		776	ggt/gTATgt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222040	2222040	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1467402054		P-0076684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	498	500	0	ENST00000398665.3:c.2872C>G	p.Pro958Ala	p.P958A	ENST00000398665	NM_032482.2	958	Cct/Gct																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068387	26068387	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	48	248	0	ENST00000435504.4:c.103C>G	p.Leu35Val	p.L35V	ENST00000435504		35	Ctt/Gtt																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246093200	246093200	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	236	375	0	ENST00000388985.4:c.571C>T	p.Gln191Ter	p.Q191*	ENST00000388985		191	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578507	7578507	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519977		P-0076688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	253	526	0	ENST00000269305.4:c.423C>G	p.Cys141Trp	p.C141W	ENST00000269305	NM_001126112.2	141	tgC/tgG																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0076688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	283	526	0	ENST00000257430.4:c.4473dup	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149441147	149441147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	113	499	0	ENST00000286301.3:c.1765G>A	p.Gly589Arg	p.G589R	ENST00000286301	NM_005211.3	589	Gga/Aga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0076688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	146	312	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023573	31023573	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0076688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1192	65	477	0	ENST00000375687.4:c.3058G>T	p.Glu1020Ter	p.E1020*	ENST00000375687	NM_015338.5	1020	Gaa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29653085	29653085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	135	517	2	ENST00000358273.4:c.5083C>T	p.Arg1695Trp	p.R1695W	ENST00000358273	NM_001042492.2	1695	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	155	399	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	108	271	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	155	516	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	178	637	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	62	444	2	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																															
MED12	9968	MSKCC	GRCh37	X	70339254	70339254	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199469672		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	19	189	0	ENST00000374080.3:c.131G>A	p.Gly44Asp	p.G44D	ENST00000374080		44	gGt/gAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221711	55221711	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760101437		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			702	17	527	1	ENST00000275493.2:c.755G>A	p.Arg252His	p.R252H	ENST00000275493	NM_005228.3	252	cGc/cAc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644869	67644869	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753730952		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			831	60	575	0	ENST00000264010.4:c.134C>T	p.Thr45Met	p.T45M	ENST00000264010	NM_006565.3	45	aCg/aTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	120	400	3	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	178	423	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
APC	324	MSKCC	GRCh37	5	112151245	112151246	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	95	355	0	ENST00000257430.4:c.893_894del	p.His298LeufsTer28	p.H298Lfs*28	ENST00000257430	NM_000038.5	296	agCAca/agca																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			819	77	551	3	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602320	10602320	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1482163272		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	39	644	0	ENST00000171111.5:c.1258del	p.Val420SerfsTer38	p.V420Sfs*38	ENST00000171111	NM_203500.1	420	Gtc/tc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178635	32178635	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs761063325		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	126	477	0	ENST00000375023.3:c.2759del	p.Pro920LeufsTer12	p.P920Lfs*12	ENST00000375023	NM_004557.3	920	cCt/ct																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257770	16257770	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779103344		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	164	548	0	ENST00000375759.3:c.5035G>A	p.Val1679Ile	p.V1679I	ENST00000375759	NM_015001.2	1679	Gtc/Atc																																																																															
MDM2	4193	MSKCC	GRCh37	12	69222698	69222698	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755256189		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	119	369	0	ENST00000462284.1:c.671C>T	p.Thr224Met	p.T224M	ENST00000462284	NM_002392.5	224	aCg/aTg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138915	64138915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	28	326	1	ENST00000334205.4:c.2287del	p.Arg763AlafsTer21	p.R763Afs*21	ENST00000334205	NM_003942.2	761	gCc/gc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216380	7216380	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	59	569	0	ENST00000380728.2:c.868del	p.Gln290SerfsTer55	p.Q290Sfs*55	ENST00000380728		290	Cag/ag																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337684	73337684	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771690280		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	128	337	3	ENST00000377767.4:c.2032del	p.Ile678PhefsTer59	p.I678Ffs*59	ENST00000377767	NM_014953.3	678	Att/tt																																																																															
MED12	9968	MSKCC	GRCh37	X	70339230	70339230	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	59	205	0	ENST00000374080.3:c.107T>C	p.Leu36Pro	p.L36P	ENST00000374080		36	cTg/cCg																																																																															
APC	324	MSKCC	GRCh37	5	112175096	112175097	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	174	376	0	ENST00000257430.4:c.3807_3808del	p.Ile1269MetfsTer6	p.I1269Mfs*6	ENST00000257430	NM_000038.5	1269	ATa/a																																																																															
ERG	2078	MSKCC	GRCh37	21	39755553	39755554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	101	554	0	ENST00000288319.7:c.1211dup	p.Glu405GlyfsTer61	p.E405Gfs*61	ENST00000288319	NM_182918.3	404	ccg/ccCg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644874	67644874	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			825	51	574	1	ENST00000264010.4:c.143del	p.Gly48ValfsTer14	p.G48Vfs*14	ENST00000264010	NM_006565.3	47	Ggg/gg																																																																															
CD79B	974	MSKCC	GRCh37	17	62007551	62007551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751548429		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	72	491	0	ENST00000392795.3:c.316G>A	p.Ala106Thr	p.A106T	ENST00000392795	NM_001039933.1	106	Gcc/Acc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520202	176520202	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763979974		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	70	449	0	ENST00000292408.4:c.1121C>T	p.Ala374Val	p.A374V	ENST00000292408	NM_213647.1	374	gCg/gTg																																																																															
CD79A	973	MSKCC	GRCh37	19	42383185	42383185	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782563209		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	169	506	1	ENST00000221972.3:c.205G>A	p.Val69Ile	p.V69I	ENST00000221972	NM_021601.3	69	Gtc/Atc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112434	115112434	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs906508818		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	67	514	0	ENST00000257566.3:c.1306C>T	p.Arg436Cys	p.R436C	ENST00000257566	NM_016569.3	436	Cgc/Tgc																																																																															
EP300	2033	MSKCC	GRCh37	22	41523719	41523719	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	135	424	0	ENST00000263253.7:c.1135A>G	p.Met379Val	p.M379V	ENST00000263253	NM_001429.3	379	Atg/Gtg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73349354	73349354	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	162	350	0	ENST00000377767.4:c.982C>T	p.Arg328Ter	p.R328*	ENST00000377767	NM_014953.3	328	Cga/Tga																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391778	139391778	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	124	502	0	ENST00000277541.6:c.6413del	p.Pro2138ArgfsTer110	p.P2138Rfs*110	ENST00000277541	NM_017617.3	2138	cCg/cg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230679	46230679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	152	413	0	ENST00000334344.6:c.928C>T	p.Arg310Cys	p.R310C	ENST00000334344	NM_152641.2	310	Cgt/Tgt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509583	106509583	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749714535		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	189	512	0	ENST00000359195.3:c.1577C>T	p.Pro526Leu	p.P526L	ENST00000359195	NM_002649.2	526	cCg/cTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120225	70120226	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	184	557	0	ENST00000245479.2:c.1228dup	p.Gln410ProfsTer168	p.Q410Pfs*168	ENST00000245479	NM_000346.3	409	-/C																																																																															
NUP93	9688	MSKCC	GRCh37	16	56865836	56865836	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747390049		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	123	366	0	ENST00000308159.5:c.1168G>A	p.Val390Met	p.V390M	ENST00000308159	NM_014669.4	390	Gtg/Atg																																																																															
BCL6	604	MSKCC	GRCh37	3	187440364	187440364	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1426858162		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	138	413	1	ENST00000232014.4:c.2003G>A	p.Arg668His	p.R668H	ENST00000232014	NM_001130845.1	668	cGt/cAt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435480	110435480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	121	494	0	ENST00000375856.3:c.2921C>T	p.Pro974Leu	p.P974L	ENST00000375856	NM_003749.2	974	cCg/cTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905351	50905351	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775620863		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	34	574	0	ENST00000440232.2:c.559G>A	p.Val187Met	p.V187M	ENST00000440232	NM_002691.3	187	Gtg/Atg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214894	36214894	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	145	470	1	ENST00000222270.7:c.3325del	p.Arg1109GlufsTer73	p.R1109Efs*73	ENST00000222270	NM_014727.1	1107	aCc/ac																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864588	57864588	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	171	575	1	ENST00000228682.2:c.2070del	p.Ser691AlafsTer28	p.S691Afs*28	ENST00000228682	NM_005269.2	689	Ccc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	57	331	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs767319284		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	127	498	2	ENST00000337652.1:c.1561dup	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238758086		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	146	539	0	ENST00000358026.2:c.2729C>T	p.Thr910Met	p.T910M	ENST00000358026	NM_001128849.1	910	aCg/aTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946973	71946973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375841975		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	154	562	0	ENST00000298229.2:c.2822C>T	p.Thr941Met	p.T941M	ENST00000298229	NM_001567.3	941	aCg/aTg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026566	48026566	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63750909		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	166	529	0	ENST00000234420.5:c.1444C>T	p.Arg482Ter	p.R482*	ENST00000234420	NM_000179.2	482	Cga/Tga																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228171	53228171	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782016330		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	156	265	0	ENST00000375401.3:c.2231G>A	p.Arg744Gln	p.R744Q	ENST00000375401	NM_004187.3	744	cGg/cAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971063	21971063	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34886500		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	70	496	0	ENST00000304494.5:c.295C>T	p.Arg99Trp	p.R99W	ENST00000304494	NM_000077.4	99	Cgg/Tgg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24134007	24134007	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779769475		P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	42	509	0	ENST00000263121.7:c.158G>A	p.Arg53Gln	p.R53Q	ENST00000263121	NM_003073.3	53	cGa/cAa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185184723	185184723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	53	482	0	ENST00000265026.3:c.1615C>T	p.Pro539Ser	p.P539S	ENST00000265026	NM_004721.4	539	Cct/Tct																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212568875	212568875	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	141	311	0	ENST00000342788.4:c.1243A>G	p.Ser415Gly	p.S415G	ENST00000342788	NM_005235.2	415	Agt/Ggt																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217651	7217652	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	75	512	0	ENST00000380728.2:c.275_276del	p.Lys92SerfsTer4	p.K92Sfs*4	ENST00000380728		92	aAA/a																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5218431	5218431	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	40	387	0	ENST00000357368.4:c.4048G>T	p.Asp1350Tyr	p.D1350Y	ENST00000357368	NM_002850.3	1350	Gat/Tat																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441321	52441321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	175	579	0	ENST00000460680.1:c.449G>A	p.Arg150His	p.R150H	ENST00000460680	NM_004656.3	150	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0076693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	168	520	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0076693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	140	393	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476307	88476307	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772244244		P-0076693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	121	467	0	ENST00000360948.2:c.1825G>A	p.Asp609Asn	p.D609N	ENST00000360948	NM_001012338.2	609	Gat/Aat																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468382	89468382	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs570346631		P-0076693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	102	367	0	ENST00000336596.2:c.1916G>A	p.Arg639His	p.R639H	ENST00000336596	NM_005233.5	639	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0076693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	180	444	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740467	58740467	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs773389405		P-0076693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	339	442	0	ENST00000305921.3:c.1372C>T	p.Arg458Ter	p.R458*	ENST00000305921	NM_003620.3	458	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903682	114903682	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0076693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	138	444	0	ENST00000543371.1:c.686G>T	p.Gly229Val	p.G229V	ENST00000543371	NM_001198531.1	229	gGa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0076693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	100	288	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342745	87342745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	83	457	0	ENST00000277120.3:c.1030G>A	p.Gly344Ser	p.G344S	ENST00000277120		344	Ggc/Agc																																																																															
ALK	238	MSKCC	GRCh37	2	29543627	29543627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	160	456	0	ENST00000389048.3:c.1536G>T	p.Gln512His	p.Q512H	ENST00000389048	NM_004304.4	512	caG/caT																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913544	39913544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	165	402	0	ENST00000378444.4:c.4784G>A	p.Ser1595Asn	p.S1595N	ENST00000378444	NM_001123385.1	1595	aGt/aAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0076695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	29	488	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	30	201	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	396	499	0	ENST00000269305.4:c.472C>G	p.Arg158Gly	p.R158G	ENST00000269305	NM_001126112.2	158	Cgc/Ggc																																																																															
PMAIP1	5366	MSKCC	GRCh37	18	57569890	57569890	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0076708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	240	321	0	ENST00000316660.6:c.70G>T	p.Glu24Ter	p.E24*	ENST00000316660	NM_021127.2	24	Gag/Tag																																																																															
SOS1	6654	MSKCC	GRCh37	2	39249462	39249870	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGGATAAATTTAGCCAAGTGACCTCATTTTCTCATCTATAACTGATGGTAAGGTTAAAAAAAAGTATTTAAGTGTAGTAGAAAAAGTAAAACATTCCAAAGAAATATAAAGTGGGGTATTTTTAGTCAAAGAAAAGAGGTCTTTGGTTGTTAGTTTCTTTTCTATTTTAGGCACAATAAACCCATGCAGGAAAGAAAATCAGTTTGAAGCAGGAAAACAAAAGTGACAGGCAACTGCATAATTCTTACCTGCGTACATATGGTACGTAAGCCTCTCTATAAGTTTAATAACAGTTCCTGCTTTGATAATTGGAATTCCAGCCTTGGGCTGCATGTTCTCTTCAAATATAATATTCTCTTCAGAGTCAGGCTCTGCAAATCTATAAACATCAGCACTAGGCAGCCTCAT	CTGGATAAATTTAGCCAAGTGACCTCATTTTCTCATCTATAACTGATGGTAAGGTTAAAAAAAAGTATTTAAGTGTAGTAGAAAAAGTAAAACATTCCAAAGAAATATAAAGTGGGGTATTTTTAGTCAAAGAAAAGAGGTCTTTGGTTGTTAGTTTCTTTTCTATTTTAGGCACAATAAACCCATGCAGGAAAGAAAATCAGTTTGAAGCAGGAAAACAAAAGTGACAGGCAACTGCATAATTCTTACCTGCGTACATATGGTACGTAAGCCTCTCTATAAGTTTAATAACAGTTCCTGCTTTGATAATTGGAATTCCAGCCTTGGGCTGCATGTTCTCTTCAAATATAATATTCTCTTCAGAGTCAGGCTCTGCAAATCTATAAACATCAGCACTAGGCAGCCTCAT	-			P-0076708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			17	13	10	0	ENST00000402219.2:c.1699_1858+249del		p.X567_splice	ENST00000402219	NM_005633.3	567																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27023908	27023928	+	inframe_deletion	In_Frame_Del	DEL	GGCTGCGGCGGCGGCAGCTGC	GGCTGCGGCGGCGGCAGCTGC	-			P-0076708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	103	448	0	ENST00000324856.7:c.1017_1037del	p.Ala343_Ala349del	p.A343_A349del	ENST00000324856	NM_006015.4	338	ggGGCTGCGGCGGCGGCAGCTGCg/ggg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143043346	143043346	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	53	269	0	ENST00000262992.4:c.2070G>C	p.Lys690Asn	p.K690N	ENST00000262992	NM_001101669.1	690	aaG/aaC																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0076711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	23	314	2	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0076716-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			555	57	518	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076716-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	18	237	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965474	25965474	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076716-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			596	36	453	0	ENST00000435504.4:c.3732T>G	p.Ser1244Arg	p.S1244R	ENST00000435504		1244	agT/agG																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs879499034		P-0076722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	166	574	0	ENST00000250448.2:c.798C>A	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0076722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	178	419	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211684	36211684	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753528166		P-0076722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	155	627	0	ENST00000222270.7:c.1435C>T	p.Arg479Trp	p.R479W	ENST00000222270	NM_014727.1	479	Cgg/Tgg																																																																															
FYN	2534	MSKCC	GRCh37	6	112041068	112041068	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62620251		P-0076724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	120	435	0	ENST00000368678.4:c.187G>A	p.Val63Ile	p.V63I	ENST00000368678		63	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112174437	112174437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs876658667		P-0076724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	115	475	0	ENST00000257430.4:c.3146G>A	p.Trp1049Ter	p.W1049*	ENST00000257430	NM_000038.5	1049	tGg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112175609	112175609	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	138	546	0	ENST00000257430.4:c.4319del	p.Pro1440HisfsTer33	p.P1440Hfs*33	ENST00000257430	NM_000038.5	1440	Cca/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0076724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	157	288	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925578	114925579	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0076724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	237	490	0	ENST00000543371.1:c.1658dup	p.Asn553LysfsTer56	p.N553Kfs*56	ENST00000543371	NM_001198531.1	552	-/A																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729094	66729099	+	inframe_deletion	In_Frame_Del	DEL	TGGAGA	TGGAGA	-			P-0076731-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			645	46	420	0	ENST00000307102.5:c.303_308del	p.Glu102_Ile103del	p.E102_I103del	ENST00000307102	NM_002755.3	101	cTGGAGAtc/ctc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374245	138374245	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076731-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	53	326	0	ENST00000289153.2:c.3199G>C	p.Asp1067His	p.D1067H	ENST00000289153	NM_006219.2	1067	Gac/Cac																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011144	12011144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076731-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			135	10	220	0	ENST00000353533.5:c.551C>T	p.Ser184Leu	p.S184L	ENST00000353533	NM_003010.3	184	tCg/tTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230776	66230776	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0076731-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			222	18	329	0	ENST00000273854.3:c.2195A>C	p.Asp732Ala	p.D732A	ENST00000273854	NM_004439.5	732	gAt/gCt																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045786	26045786	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076731-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1199	87	662	1	ENST00000540144.1:c.148C>A	p.Arg50Ser	p.R50S	ENST00000540144	NM_003531.2	50	Cgc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579520	7579521	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	A			P-0076731-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			929	74	502	0	ENST00000269305.4:c.166_167delinsT	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	GAa/Ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7579357	7579367	+	frameshift_variant	Frame_Shift_Del	DEL	ACGGAAACCGT	ACGGAAACCGT	-			P-0076732-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			115	362	469	0	ENST00000269305.4:c.320_330del	p.Tyr107SerfsTer38	p.Y107Sfs*38	ENST00000269305	NM_001126112.2	107	tACGGTTTCCGT/t																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519920		P-0076732-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			124	90	263	0	ENST00000397062.3:c.85G>A	p.Asp29Asn	p.D29N	ENST00000397062	NM_006164.4	29	Gat/Aat																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670598	134670598	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs563780078		P-0076732-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			164	55	477	0	ENST00000398015.3:c.509G>A	p.Arg170Gln	p.R170Q	ENST00000398015	NM_004441.4	170	cGg/cAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396812	139396812	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076732-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			89	107	372	0	ENST00000277541.6:c.5296C>T	p.Gln1766Ter	p.Q1766*	ENST00000277541	NM_017617.3	1766	Cag/Tag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118339497	118339497	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076732-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			222	51	221	0	ENST00000534358.1:c.440A>G	p.Gln147Arg	p.Q147R	ENST00000534358	NM_005933.3	147	cAa/cGa																																																																															
POLE	5426	MSKCC	GRCh37	12	133252063	133252063	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076732-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			139	115	446	0	ENST00000320574.5:c.1147A>T	p.Met383Leu	p.M383L	ENST00000320574	NM_006231.2	383	Atg/Ttg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819356	3819356	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0076732-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			99	119	366	0	ENST00000262367.5:c.2881-2A>T		p.X961_splice	ENST00000262367	NM_004380.2	961																																																																																
SLFN11	91607	MSKCC	GRCh37	17	33680356	33680356	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0076732-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			17	29	60	0	ENST00000308377.4:c.1921A>G	p.Ser641Gly	p.S641G	ENST00000308377	NM_152270.3	641	Agt/Ggt																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445242	29445242	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076732-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			163	111	475	1	ENST00000544604.2:c.1073G>T	p.Arg358Leu	p.R358L	ENST00000544604	NM_001206998.1	358	cGg/cTg																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271297	26271297	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076732-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			352	119	458	0	ENST00000305910.3:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000305910	NM_003534.2	106	Gag/Cag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509757	106509757	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076732-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			286	41	414	0	ENST00000359195.3:c.1751A>T	p.Lys584Met	p.K584M	ENST00000359195	NM_002649.2	584	aAg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	96	235	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	112	555	0	ENST00000269305.4:c.314del	p.Gly105AlafsTer18	p.G105Afs*18	ENST00000269305	NM_001126112.2	105	gGc/gc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092970	27092970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076745-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			112	42	576	0	ENST00000324856.7:c.2901G>A	p.Met967Ile	p.M967I	ENST00000324856	NM_006015.4	967	atG/atA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711941	89711941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076745-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			39	30	300	0	ENST00000371953.3:c.559G>T	p.Asp187Tyr	p.D187Y	ENST00000371953	NM_000314.4	187	Gat/Tat																																																																															
RB1	5925	MSKCC	GRCh37	13	49033823	49033823	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0076745-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			50	81	362	0	ENST00000267163.4:c.1961-1G>T		p.X654_splice	ENST00000267163	NM_000321.2	654																																																																																
CBFB	865	MSKCC	GRCh37	16	67063711	67063711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076745-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			37	86	449	0	ENST00000412916.2:c.160G>A	p.Glu54Lys	p.E54K	ENST00000412916		54	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057520005		P-0076745-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			49	111	552	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166326	118166326	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778618300		P-0076745-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			104	123	602	0	ENST00000369448.3:c.836C>T	p.Pro279Leu	p.P279L	ENST00000369448	NM_017709.3	279	cCg/cTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89882945	89882945	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0076745-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			121	105	488	0	ENST00000389301.3:c.79G>A	p.Ala27Thr	p.A27T	ENST00000389301	NM_000135.2	27	Gcg/Acg																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33680078	33680078	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076745-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			75	51	288	0	ENST00000308377.4:c.2003A>T	p.Asp668Val	p.D668V	ENST00000308377	NM_152270.3	668	gAc/gTc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755687	57755687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076745-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			46	100	511	1	ENST00000274289.3:c.100C>T	p.Arg34Trp	p.R34W	ENST00000274289	NM_006622.3	34	Cgg/Tgg																																																																															
SMO	6608	MSKCC	GRCh37	7	128850286	128850286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076745-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			111	51	460	0	ENST00000249373.3:c.1549G>T	p.Val517Leu	p.V517L	ENST00000249373	NM_005631.4	517	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0076747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			93	74	545	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
RET	5979	MSKCC	GRCh37	10	43606658	43606658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767601598		P-0076747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			123	23	507	0	ENST00000355710.3:c.1267G>A	p.Gly423Arg	p.G423R	ENST00000355710	NM_020975.4	423	Ggg/Agg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44911001	44911002	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0076747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			105	78	531	0	ENST00000377967.4:c.705_706del	p.Asn236SerfsTer26	p.N236Sfs*26	ENST00000377967	NM_021140.2	234	acAGag/acag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			151	62	246	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575686	48575690	+	frameshift_variant	Frame_Shift_Del	DEL	AGAGT	AGAGT	-			P-0076747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			69	55	221	0	ENST00000342988.3:c.447_451del	p.Ser150CysfsTer10	p.S150Cfs*10	ENST00000342988	NM_005359.5	149	cAGAGT/c																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971174	21971175	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0076747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			100	79	424	0	ENST00000304494.5:c.183dup	p.Leu62AlafsTer58	p.L62Afs*58	ENST00000304494	NM_000077.4	61	-/G																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974743	21974744	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0076747-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			176	16	471	0	ENST00000304494.5:c.83dup	p.Arg29AlafsTer15	p.R29Afs*15	ENST00000304494	NM_000077.4	28	gtg/gtTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0076753-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			564	26	508	0	ENST00000269305.4:c.528C>A	p.Cys176Ter	p.C176*	ENST00000269305	NM_001126112.2	176	tgC/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076753-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			297	48	262	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163720	32163720	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1253487294		P-0076760-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			577	86	430	0	ENST00000375023.3:c.5506G>A	p.Glu1836Lys	p.E1836K	ENST00000375023	NM_004557.3	1836	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0076760-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			696	88	360	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770633	40770633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076760-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			755	76	384	0	ENST00000373198.4:c.2749G>A	p.Glu917Lys	p.E917K	ENST00000373198	NM_133170.3	917	Gag/Aag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610370	10610370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076760-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			860	115	493	0	ENST00000171111.5:c.340G>T	p.Gly114Trp	p.G114W	ENST00000171111	NM_203500.1	114	Ggg/Tgg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53225910	53225916	+	frameshift_variant	Frame_Shift_Del	DEL	GCAATGG	GCAATGG	-			P-0076760-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			432	75	187	0	ENST00000375401.3:c.2933_2939del	p.Thr978MetfsTer26	p.T978Mfs*26	ENST00000375401	NM_004187.3	978	aCCATTGCt/at																																																																															
LMO1	4004	MSKCC	GRCh37	11	8251945	8251945	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076760-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			855	125	540	0	ENST00000335790.3:c.132G>C	p.Trp44Cys	p.W44C	ENST00000335790	NM_002315.2	44	tgG/tgC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0076764-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			378	1134	434	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs1057517840		P-0076764-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			392	139	670	0	ENST00000269305.4:c.626_627del	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144049	11144051	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0076764-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			489	73	568	0	ENST00000344626.4:c.3634_3636del	p.Glu1212del	p.E1212del	ENST00000344626	NM_003072.3	1210	gtGGAg/gtg																																																																															
ATRX	546	MSKCC	GRCh37	X	76776931	76776931	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076764-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			268	45	411	0	ENST00000373344.5:c.7021A>T	p.Ser2341Cys	p.S2341C	ENST00000373344	NM_000489.3	2341	Agt/Tgt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248476	212248476	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076764-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			419	129	563	0	ENST00000342788.4:c.3791C>A	p.Thr1264Lys	p.T1264K	ENST00000342788	NM_005235.2	1264	aCa/aAa																																																																															
MAX	4149	MSKCC	GRCh37	14	65560511	65560511	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076764-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	180	435	1	ENST00000358664.4:c.86A>T	p.Asn29Ile	p.N29I	ENST00000358664	NM_002382.4	29	aAt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0076787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	64	455	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618716	37618716	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	105	500	1	ENST00000447079.4:c.397del	p.Ser133AlafsTer11	p.S133Afs*11	ENST00000447079	NM_015083.1	131	gAa/ga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061228	38061228	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	167	417	0	ENST00000250448.2:c.761del	p.Phe254SerfsTer67	p.F254Sfs*67	ENST00000250448	NM_004496.3	254	tTc/tc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37667854	37667854	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0076787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	43	303	0	ENST00000447079.4:c.2739C>G	p.Tyr913Ter	p.Y913*	ENST00000447079	NM_015083.1	913	taC/taG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0076789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	125	339	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098975	178098975	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1328994103		P-0076789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	78	284	0	ENST00000397062.3:c.70T>C	p.Trp24Arg	p.W24R	ENST00000397062	NM_006164.4	24	Tgg/Cgg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066693	94066693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	94	309	0	ENST00000369303.4:c.1066G>T	p.Asp356Tyr	p.D356Y	ENST00000369303	NM_004440.3	356	Gac/Tac																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420272	88420272	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	106	353	0	ENST00000360948.2:c.2414G>T	p.Gly805Val	p.G805V	ENST00000360948	NM_001012338.2	805	gGg/gTg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188374	32188374	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			855	146	426	0	ENST00000375023.3:c.967C>G	p.Pro323Ala	p.P323A	ENST00000375023	NM_004557.3	323	Ccc/Gcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	68	162	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968185	68968185	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201801050		P-0076789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	35	227	0	ENST00000288368.4:c.1214C>T	p.Thr405Met	p.T405M	ENST00000288368	NM_024870.2	405	aCg/aTg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975397	13975397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	124	353	2	ENST00000405192.2:c.490G>T	p.Ala164Ser	p.A164S	ENST00000405192	NM_001163147.1	164	Gcc/Tcc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55210049	55210049	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	77	266	0	ENST00000275493.2:c.159G>C	p.Arg53Ser	p.R53S	ENST00000275493	NM_005228.3	53	agG/agC																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989523	212989523	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	96	273	0	ENST00000342788.4:c.188T>G	p.Leu63Arg	p.L63R	ENST00000342788	NM_005235.2	63	cTg/cGg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285806	46285807	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0076789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	86	298	0	ENST00000334344.6:c.5074_5075insA	p.Ser1692TyrfsTer13	p.S1692Yfs*13	ENST00000334344	NM_152641.2	1692	tca/tAca																																																																															
MALT1	10892	MSKCC	GRCh37	18	56414635	56414635	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0076789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	59	210	0	ENST00000348428.3:c.2038-2A>G		p.X680_splice	ENST00000348428	NM_006785.3	680																																																																																
BCOR	54880	MSKCC	GRCh37	X	39931602	39931602	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0076789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	62	327	0	ENST00000378444.4:c.2997G>T	p.Gln999His	p.Q999H	ENST00000378444	NM_001123385.1	999	caG/caT																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2058291	2058291	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0076789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	80	233	0	ENST00000349721.2:c.1348G>T	p.Glu450Ter	p.E450*	ENST00000349721	NM_003070.3	450	Gaa/Taa																																																																															
POT1	25913	MSKCC	GRCh37	7	124464018	124464018	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0076789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	38	209	0	ENST00000357628.3:c.1903T>C	p.Ter635GlnextTer6	p.*635Qext*6	ENST00000357628	NM_015450.2	635	Taa/Caa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25468930	25468930	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	98	300	0	ENST00000264709.3:c.1433G>C	p.Arg478Pro	p.R478P	ENST00000264709	NM_175629.2	478	cGg/cCg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165072	47165072	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0076789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	114	304	0	ENST00000409792.3:c.1054A>T	p.Lys352Ter	p.K352*	ENST00000409792	NM_014159.6	352	Aaa/Taa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187531155	187531155	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076789-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	68	247	0	ENST00000441802.2:c.9868A>G	p.Ile3290Val	p.I3290V	ENST00000441802	NM_005245.3	3290	Att/Gtt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935294	36935294	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076790-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			761	68	305	0	ENST00000361632.4:c.1433G>T	p.Arg478Met	p.R478M	ENST00000361632		478	aGg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs1057517840		P-0076791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	332	370	0	ENST00000269305.4:c.626_627del	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913385		P-0076791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	348	330	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981563	201981565	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TGG	TGG	-	rs995289305		P-0076791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	525	314	0	ENST00000359651.3:c.478+1_478+3del		p.X160_splice	ENST00000359651		160																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	134	187	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARAF	369	MSKCC	GRCh37	X	47424271	47424271	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			801	274	375	0	ENST00000377045.4:c.276A>T	p.Glu92Asp	p.E92D	ENST00000377045	NM_001654.4	92	gaA/gaT																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55152035	55152035	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	151	314	0	ENST00000257290.5:c.2467A>C	p.Asn823His	p.N823H	ENST00000257290	NM_006206.4	823	Aac/Cac																																																																															
MET	4233	MSKCC	GRCh37	7	116411875	116411892	+	intron_variant	Intron	DEL	CAAGCTCTTTCTTTCTCT	CAAGCTCTTTCTTTCTCT	-			P-0076792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	681	387	0	ENST00000397752.3:c.2888-27_2888-10del		p.*963*	ENST00000397752	NM_000245.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7574026	7574026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	33	225	0	ENST00000269305.4:c.1001G>T	p.Gly334Val	p.G334V	ENST00000269305	NM_001126112.2	334	gGg/gTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176666804	176666804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	18	179	0	ENST00000439151.2:c.4240G>A	p.Glu1414Lys	p.E1414K	ENST00000439151	NM_022455.4	1414	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0076793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	24	155	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046724	180046724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			770	56	480	0	ENST00000261937.6:c.2588C>T	p.Ser863Phe	p.S863F	ENST00000261937	NM_182925.4	863	tCc/tTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521636	89521637	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0076793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	28	259	0	ENST00000336596.2:c.2716dup	p.Ser906LysfsTer13	p.S906Kfs*13	ENST00000336596	NM_005233.5	905	caa/cAaa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143352409	143352411	+		nonsynonymous_SNV	TNP	CCA	CCA	CCA			P-0076793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	33	143	0																																																																																						
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0076799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	46	341	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0076799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			792	59	508	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1940187	1940187	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1274132193		P-0076799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	20	137	0	ENST00000382895.3:c.1684A>G	p.Ile562Val	p.I562V	ENST00000382895	NM_133330.2	562	Atc/Gtc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538206	187538206	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1327390871		P-0076799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	45	344	0	ENST00000441802.2:c.9028G>T	p.Glu3010Ter	p.E3010*	ENST00000441802	NM_005245.3	3010	Gaa/Taa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713896	30713899	+	frameshift_variant	Frame_Shift_Del	DEL	TCTG	TCTG	-			P-0076799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	61	441	0	ENST00000359013.4:c.1301_1304del	p.Ser434TrpfsTer21	p.S434Wfs*21	ENST00000359013	NM_001024847.2	432	acTCTG/ac																																																																															
TSHR	7253	MSKCC	GRCh37	14	81534630	81534630	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	46	273	0	ENST00000298171.2:c.275T>A	p.Leu92Gln	p.L92Q	ENST00000298171	NM_000369.2	92	cTg/cAg																																																																															
ARAF	369	MSKCC	GRCh37	X	47428157	47428157	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	71	412	0	ENST00000377045.4:c.1117A>C	p.Met373Leu	p.M373L	ENST00000377045	NM_001654.4	373	Atg/Ctg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862737	9862737	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs201072838		P-0076800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	100	315	0	ENST00000330684.3:c.2566C>G	p.Arg856Gly	p.R856G	ENST00000330684	NM_001134407.1	856	Cgg/Ggg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0076802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	152	311	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0076802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	107	496	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
RB1	5925	MSKCC	GRCh37	13	49039133	49039133	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0076802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	37	137	0	ENST00000267163.4:c.2212-1G>C		p.X738_splice	ENST00000267163	NM_000321.2	738																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72993275	72993275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	102	427	0	ENST00000268489.5:c.770C>T	p.Ser257Phe	p.S257F	ENST00000268489	NM_006885.3	257	tCc/tTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874923	151874923	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	166	396	0	ENST00000262189.6:c.7615C>G	p.Gln2539Glu	p.Q2539E	ENST00000262189	NM_170606.2	2539	Cag/Gag																																																																															
CBL	867	MSKCC	GRCh37	11	119167626	119167626	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0076802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	118	312	0	ENST00000264033.4:c.2037-2A>T		p.X679_splice	ENST00000264033	NM_005188.3	679																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0076806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	145	351	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																															
KIT	3815	MSKCC	GRCh37	4	55569926	55569926	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060502570		P-0076806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	118	297	0	ENST00000288135.5:c.793G>A	p.Gly265Ser	p.G265S	ENST00000288135	NM_000222.2	265	Ggt/Agt																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803005	32803005	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	41	412	0	ENST00000374899.4:c.871C>T	p.Arg291Ter	p.R291*	ENST00000374899	NM_018833.2	291	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	118	266	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139818306	139818306	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0076806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	174	327	0	ENST00000247668.2:c.1141T>C	p.Phe381Leu	p.F381L	ENST00000247668	NM_021138.3	381	Ttc/Ctc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575081	48575082	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0076806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	120	321	0	ENST00000342988.3:c.275_276del	p.His92ArgfsTer11	p.H92Rfs*11	ENST00000342988	NM_005359.5	92	cAT/c																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974726	21974732	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTCCA	GCCTCCA	-			P-0076806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	190	420	0	ENST00000304494.5:c.95_101del	p.Leu32ArgfsTer19	p.L32Rfs*19	ENST00000304494	NM_000077.4	32	cTGGAGGCg/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579514	7579533	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTCTTCAGTGAACCATTG	GGGTCTTCAGTGAACCATTG	CGGTCT			P-0076806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	276	496	0	ENST00000269305.4:c.154_173delinsAGACCG	p.Gln52ArgfsTer6	p.Q52Rfs*6	ENST00000269305	NM_001126112.2	52	CAATGGTTCACTGAAGACCCa/AGACCGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0076811-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	218	696	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0076811-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	14	134	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385222	41385222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076811-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	38	467	0	ENST00000373198.4:c.739C>T	p.Arg247Cys	p.R247C	ENST00000373198	NM_133170.3	247	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0076811-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	232	381	0	ENST00000257430.4:c.4063dup	p.Ser1355PhefsTer20	p.S1355Ffs*20	ENST00000257430	NM_000038.5	1353	-/T																																																																															
B2M	567	MSKCC	GRCh37	15	45003812	45003812	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0076811-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	80	481	0	ENST00000558401.1:c.67+1G>C		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076811-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	51	212	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056053	26056067	+	inframe_deletion	In_Frame_Del	DEL	CCTTGGGCTTAGCGG	CCTTGGGCTTAGCGG	-	rs756916945		P-0076811-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	175	528	0	ENST00000343677.2:c.590_604del	p.Ala197_Lys201del	p.A197_K201del	ENST00000343677	NM_005319.3	197	gCCGCTAAGCCCAAGGtt/gtt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3860602	3860602	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0076811-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	44	343	0	ENST00000262367.5:c.975+2T>C		p.X325_splice	ENST00000262367	NM_004380.2	325																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0076820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	72	335	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0076820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	58	302	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112137081	112137081	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0076820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	41	182	0	ENST00000257430.4:c.834+1G>A		p.X278_splice	ENST00000257430	NM_000038.5	278																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48593533	48593533	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	104	251	0	ENST00000342988.3:c.1284G>C	p.Lys428Asn	p.K428N	ENST00000342988	NM_005359.5	428	aaG/aaC																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520027	106520027	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370034420		P-0076820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	59	248	0	ENST00000359195.3:c.2455G>A	p.Asp819Asn	p.D819N	ENST00000359195	NM_002649.2	819	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0076820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	129	325	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579547	7579547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			754	194	417	0	ENST00000269305.4:c.140del	p.Pro47ArgfsTer76	p.P47Rfs*76	ENST00000269305	NM_001126112.2	47	cCg/cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	75	204	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BIRC3	330	MSKCC	GRCh37	11	102201856	102201856	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1425711656		P-0076820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	53	322	0	ENST00000263464.3:c.1208T>C	p.Ile403Thr	p.I403T	ENST00000263464	NM_001165.4	403	aTc/aCc																																																																															
ATRX	546	MSKCC	GRCh37	X	76938782	76938782	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	74	305	0	ENST00000373344.5:c.1966T>A	p.Ser656Thr	p.S656T	ENST00000373344	NM_000489.3	656	Tcc/Acc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445190	49445190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1058	90	526	4	ENST00000301067.7:c.2276C>T	p.Pro759Leu	p.P759L	ENST00000301067	NM_003482.3	759	cCa/cTa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295760	1295760	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs977662894		P-0076820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			952	102	524	0				ENST00000310581	NM_198253.2																																																																																	
CDKN2A	1029	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519852		P-0076821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	526	480	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578464	7578476	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGCCGGGCGG	GGGTGCCGGGCGG	-	rs876659215		P-0076821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	248	541	0	ENST00000269305.4:c.454_466del	p.Pro152AlafsTer14	p.P152Afs*14	ENST00000269305	NM_001126112.2	152	CCGCCCGGCACCCgc/gc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373239	118373239	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140529566		P-0076821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			806	86	497	0	ENST00000534358.1:c.6632G>A	p.Arg2211Gln	p.R2211Q	ENST00000534358	NM_005933.3	2211	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	146	259	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591851	48591875	+	frameshift_variant	Frame_Shift_Del	DEL	ATTTAAGGTTCCTTCAAGCTGCCCT	ATTTAAGGTTCCTTCAAGCTGCCCT	-			P-0076821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	62	458	0	ENST00000342988.3:c.1017_1041del	p.Phe339LeufsTer37	p.F339Lfs*37	ENST00000342988	NM_005359.5	338	acATTTAAGGTTCCTTCAAGCTGCCCT/ac																																																																															
ATM	472	MSKCC	GRCh37	11	108190786	108190786	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0076821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	44	212	0	ENST00000278616.4:c.6452+1G>A		p.X2151_splice	ENST00000278616	NM_000051.3	2151																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27106875	27106880	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCCG	GTGCCG	C			P-0076821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	269	539	0	ENST00000324856.7:c.6486_6491delinsC	p.Cys2163GlyfsTer60	p.C2163Gfs*60	ENST00000324856	NM_006015.4	2162	gtGTGCCGg/gtCg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519922		P-0076828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	232	489	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0076828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	612	451	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100546	8100546	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	324	607	0	ENST00000346208.3:c.520G>T	p.Gly174Cys	p.G174C	ENST00000346208		174	Ggc/Tgc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519896		P-0076828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	590	447	1	ENST00000281708.4:c.1514G>A	p.Arg505His	p.R505H	ENST00000281708	NM_033632.3	505	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101570	27101570	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	451	578	1	ENST00000324856.7:c.4856del	p.Pro1619GlnfsTer7	p.P1619Qfs*7	ENST00000324856	NM_006015.4	1618	Ccc/cc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004238	150004239	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0076828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	264	162	0	ENST00000253339.5:c.1986dup	p.Gln663ThrfsTer5	p.Q663Tfs*5	ENST00000253339		662	-/A																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444960	49444960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			898	239	663	0	ENST00000301067.7:c.2506del	p.Gln836SerfsTer94	p.Q836Sfs*94	ENST00000301067	NM_003482.3	836	Cag/ag																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110130	8110130	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs531140672		P-0076828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	620	537	0	ENST00000585124.1:c.475C>T	p.Arg159Cys	p.R159C	ENST00000585124	NM_004217.3	159	Cgc/Tgc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226556	2226556	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs951636242		P-0076828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	483	668	0	ENST00000398665.3:c.4036G>A	p.Gly1346Ser	p.G1346S	ENST00000398665	NM_032482.2	1346	Ggc/Agc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932163	39932163	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	586	236	0	ENST00000378444.4:c.2436A>T	p.Glu812Asp	p.E812D	ENST00000378444	NM_001123385.1	812	gaA/gaT																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004501	150004501	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0076828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			895	237	593	0	ENST00000253339.5:c.1724C>G	p.Ser575Ter	p.S575*	ENST00000253339		575	tCa/tGa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239629	53239629	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	614	275	0	ENST00000375401.3:c.1713G>T	p.Met571Ile	p.M571I	ENST00000375401	NM_004187.3	571	atG/atT																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196137	138196137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			739	188	518	1	ENST00000237289.4:c.451G>A	p.Glu151Lys	p.E151K	ENST00000237289	NM_001270507.1	151	Gaa/Aaa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209321	98209321	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1028469311		P-0076828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	203	585	0	ENST00000331920.6:c.4217A>G	p.His1406Arg	p.H1406R	ENST00000331920	NM_000264.3	1406	cAc/cGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434090	49434090	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0076828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	363	560	1	ENST00000301067.7:c.7463C>A	p.Ser2488Ter	p.S2488*	ENST00000301067	NM_003482.3	2488	tCg/tAg																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123504149	123504149	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1228927842		P-0076828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	114	120	0	ENST00000371139.4:c.325A>G	p.Arg109Gly	p.R109G	ENST00000371139	NM_001114937.2	109	Aga/Gga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554564	63554564	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0076828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	467	625	0	ENST00000307078.5:c.175G>T	p.Glu59Ter	p.E59*	ENST00000307078	NM_004655.3	59	Gaa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101352	27101352	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	63	547	0	ENST00000324856.7:c.4634G>A	p.Trp1545Ter	p.W1545*	ENST00000324856	NM_006015.4	1545	tGg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0076830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	120	284	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CDK8	1024	MSKCC	GRCh37	13	26911760	26911760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	147	149	0	ENST00000381527.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000381527	NM_001260.1	62	tCg/tTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs397517199		P-0076830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	139	249	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0076830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	74	169	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508556	106508556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1189118505		P-0076830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	43	443	1	ENST00000359195.3:c.550C>T	p.Arg184Cys	p.R184C	ENST00000359195	NM_002649.2	184	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877822	151877822	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	40	405	0	ENST00000262189.6:c.7123C>T	p.Gln2375Ter	p.Q2375*	ENST00000262189	NM_170606.2	2375	Caa/Taa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965472	68965472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200682883		P-0076830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	82	479	0	ENST00000288368.4:c.1084C>T	p.Arg362Trp	p.R362W	ENST00000288368	NM_024870.2	362	Cgg/Tgg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230866	66230903	+	frameshift_variant	Frame_Shift_Del	DEL	AATTCTCTTTTTCCTGGTAGTTTCAAACGTCCACTACA	AATTCTCTTTTTCCTGGTAGTTTCAAACGTCCACTACA	-			P-0076830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	33	368	0	ENST00000273854.3:c.2068_2105del	p.Cys690ThrfsTer8	p.C690Tfs*8	ENST00000273854	NM_004439.5	690	TGTAGTGGACGTTTGAAACTACCAGGAAAAAGAGAATTa/a																																																																															
APC	324	MSKCC	GRCh37	5	112175744	112175744	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	244	507	0	ENST00000257430.4:c.4453del	p.Ala1485LeufsTer22	p.A1485Lfs*22	ENST00000257430	NM_000038.5	1485	Gct/ct																																																																															
FH	2271	MSKCC	GRCh37	1	241682991	241682991	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1226883651		P-0076837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	332	381	0	ENST00000366560.3:c.32C>T	p.Ser11Leu	p.S11L	ENST00000366560	NM_000143.3	11	tCg/tTg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13949301	13949301	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	279	302	0	ENST00000405192.2:c.827G>T	p.Arg276Met	p.R276M	ENST00000405192	NM_001163147.1	276	aGg/aTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931880	68931880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	118	301	0	ENST00000288368.4:c.310G>A	p.Glu104Lys	p.E104K	ENST00000288368	NM_024870.2	104	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578474	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	481	500	0	ENST00000269305.4:c.456del	p.Gly154AlafsTer16	p.G154Afs*16	ENST00000269305	NM_001126112.2	152	ccG/cc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141080	55141080	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	405	427	0	ENST00000257290.5:c.1726G>T	p.Asp576Tyr	p.D576Y	ENST00000257290	NM_006206.4	576	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	499	268	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239892	53239892	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	267	261	0	ENST00000375401.3:c.1549del	p.Asp517IlefsTer32	p.D517Ifs*32	ENST00000375401	NM_004187.3	517	Gat/at																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805330	32805330	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1435326394		P-0076837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	351	375	0	ENST00000374899.4:c.592C>T	p.Leu198Phe	p.L198F	ENST00000374899	NM_018833.2	198	Ctc/Ttc																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045957	26045957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1108	155	518	0	ENST00000540144.1:c.319G>A	p.Asp107Asn	p.D107N	ENST00000540144	NM_003531.2	107	Gac/Aac																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38184299	38184299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	180	350	0	ENST00000317025.8:c.1657G>A	p.Glu553Lys	p.E553K	ENST00000317025	NM_023034.1	553	Gaa/Aaa																																																																															
PARP1	142	MSKCC	GRCh37	1	226573328	226573328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	411	447	0	ENST00000366794.5:c.888G>T	p.Glu296Asp	p.E296D	ENST00000366794	NM_001618.3	296	gaG/gaT																																																																															
LYN	4067	MSKCC	GRCh37	8	56910974	56910974	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			739	103	388	0	ENST00000519728.1:c.1120C>G	p.Leu374Val	p.L374V	ENST00000519728	NM_002350.3	374	Ctg/Gtg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77054919	77054919	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0076837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	160	354	0	ENST00000356341.3:c.943G>T	p.Glu315Ter	p.E315*	ENST00000356341	NM_002576.4	315	Gag/Tag																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467756	50467756	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			945	667	511	0	ENST00000331340.3:c.991G>T	p.Val331Leu	p.V331L	ENST00000331340	NM_006060.4	331	Gtg/Ttg																																																																															
B2M	567	MSKCC	GRCh37	15	45007760	45007761	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0076837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	213	412	0	ENST00000558401.1:c.207_208delinsTT	p.Glu70Ter	p.E70*	ENST00000558401	NM_004048.2	69	gtGGag/gtTTag																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45371743	45371743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	71	356	0	ENST00000262160.6:c.1248G>A	p.Met416Ile	p.M416I	ENST00000262160	NM_005901.5	416	atG/atA																																																																															
STK40	83931	MSKCC	GRCh37	1	36809033	36809033	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			762	262	424	0	ENST00000373129.3:c.1021C>G	p.Leu341Val	p.L341V	ENST00000373129	NM_032017.1	341	Ctg/Gtg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546928	9546928	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs778974166		P-0076837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			801	264	531	0	ENST00000353224.5:c.1094G>T	p.Gly365Val	p.G365V	ENST00000353224	NM_177990.2	365	gGc/gTc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944876	131944876	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	52	177	0	ENST00000265335.6:c.2897A>C	p.Gln966Pro	p.Q966P	ENST00000265335		966	cAa/cCa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131939066	131939066	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	103	278	0	ENST00000265335.6:c.2282T>C	p.Ile761Thr	p.I761T	ENST00000265335		761	aTa/aCa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739912	41739912	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	TT			P-0076837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1243	124	408	0	ENST00000242208.4:c.61delinsAA	p.Ser21AsnfsTer86	p.S21Nfs*86	ENST00000242208	NM_002192.2	21	Tcc/AAcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0076840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	326	514	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2956964	2956964	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1395288944		P-0076840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	360	501	0	ENST00000396946.4:c.2663G>A	p.Arg888His	p.R888H	ENST00000396946	NM_032415.4	888	cGt/cAt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225400312	225400312	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768929186		P-0076840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	163	212	0	ENST00000264414.4:c.311C>T	p.Thr104Met	p.T104M	ENST00000264414	NM_003590.4	104	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	171	230	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RARA	5914	MSKCC	GRCh37	17	38508694	38508694	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	363	501	0	ENST00000254066.5:c.742G>T	p.Gly248Cys	p.G248C	ENST00000254066	NM_000964.3	248	Ggc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0076879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	238	331	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575090	48575090	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	26	307	0	ENST00000342988.3:c.284A>G	p.Tyr95Cys	p.Y95C	ENST00000342988	NM_005359.5	95	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577557	7577557	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519982		P-0076879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	227	242	0	ENST00000269305.4:c.724T>A	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	Tgc/Agc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139397756	139397756	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	212	337	0	ENST00000277541.6:c.5045A>G	p.Asn1682Ser	p.N1682S	ENST00000277541	NM_017617.3	1682	aAc/aGc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259113	89259113	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	71	344	0	ENST00000336596.2:c.257G>C	p.Trp86Ser	p.W86S	ENST00000336596	NM_005233.5	86	tGg/tCg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117739	70117739	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	305	469	0	ENST00000245479.2:c.210del	p.Val71CysfsTer39	p.V71Cfs*39	ENST00000245479	NM_000346.3	69	ttC/tt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692793	89692793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	34	214	0	ENST00000371953.3:c.277C>T	p.His93Tyr	p.H93Y	ENST00000371953	NM_000314.4	93	Cat/Tat																																																																															
ATM	472	MSKCC	GRCh37	11	108216476	108216477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0076883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	97	245	1	ENST00000278616.4:c.8432dup	p.Ser2812ValfsTer3	p.S2812Vfs*3	ENST00000278616	NM_000051.3	2809	caa/cAaa																																																																															
ATM	472	MSKCC	GRCh37	11	108235935	108235935	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs770641163		P-0076883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	185	437	0	ENST00000278616.4:c.8977C>T	p.Arg2993Ter	p.R2993*	ENST00000278616	NM_000051.3	2993	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575169	48575169	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	148	279	0	ENST00000342988.3:c.366del	p.Lys122AsnfsTer7	p.K122Nfs*7	ENST00000342988	NM_005359.5	121	ttA/tt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47710068	47710068	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs551060742		P-0076883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	99	286	0	ENST00000233146.2:c.2785C>T	p.Arg929Ter	p.R929*	ENST00000233146	NM_000251.2	929	Cga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231693	66231693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	118	355	0	ENST00000273854.3:c.2007G>T	p.Glu669Asp	p.E669D	ENST00000273854	NM_004439.5	669	gaG/gaT																																																																															
CDH1	999	MSKCC	GRCh37	16	68845646	68845648	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0076883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	145	352	0	ENST00000261769.5:c.895_897del	p.Ala299del	p.A299del	ENST00000261769	NM_004360.3	298	GCC/-																																																																															
MTOR	2475	MSKCC	GRCh37	1	11210212	11210212	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1403372273		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	75	363	0	ENST00000361445.4:c.4541G>A	p.Arg1514Gln	p.R1514Q	ENST00000361445	NM_004958.3	1514	cGg/cAg																																																																															
NADK	65220	MSKCC	GRCh37	1	1693466	1693466	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776728824		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	112	424	1	ENST00000341426.5:c.188G>A	p.Arg63His	p.R63H	ENST00000341426	NM_023018.4	63	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	117	489	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
MPL	4352	MSKCC	GRCh37	1	43804304	43804304	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763568293		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	101	452	1	ENST00000372470.3:c.304C>T	p.Arg102Cys	p.R102C	ENST00000372470	NM_005373.2	102	Cgt/Tgt																																																																															
MPL	4352	MSKCC	GRCh37	1	43812538	43812538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772102737		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	103	504	0	ENST00000372470.3:c.1241C>T	p.Ser414Leu	p.S414L	ENST00000372470	NM_005373.2	414	tCg/tTg																																																																															
SUFU	51684	MSKCC	GRCh37	10	104377121	104377121	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368020224		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	71	432	0	ENST00000369902.3:c.1232C>T	p.Thr411Met	p.T411M	ENST00000369902	NM_016169.3	411	aCg/aTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	74	291	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	94	321	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376683	118376683	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149340870		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	77	474	0	ENST00000534358.1:c.10076C>T	p.Ala3359Val	p.A3359V	ENST00000534358	NM_005933.3	3359	gCg/gTg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136024	64136024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	84	436	1	ENST00000334205.4:c.1285C>T	p.Arg429Cys	p.R429C	ENST00000334205	NM_003942.2	429	Cgc/Tgc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856623	111856623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	85	376	0	ENST00000341259.2:c.674G>A	p.Arg225His	p.R225H	ENST00000341259	NM_005475.2	225	cGc/cAc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12043919	12043919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1398054657		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	69	402	1	ENST00000396373.4:c.1298G>A	p.Arg433His	p.R433H	ENST00000396373	NM_001987.4	433	cGt/cAt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495375	56495377	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs780883720		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	85	463	0	ENST00000267101.3:c.3573_3575del	p.Glu1191del	p.E1191del	ENST00000267101	NM_001982.3	1189	GAA/-																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524568	103524568	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	83	370	3	ENST00000355739.4:c.2705del	p.Asn902IlefsTer4	p.N902Ifs*4	ENST00000355739	NM_000123.3	900	cAa/ca																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436062	110436062	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199672355		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	88	557	0	ENST00000375856.3:c.2339C>T	p.Pro780Leu	p.P780L	ENST00000375856	NM_003749.2	780	cCg/cTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	36	325	1	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																																																															
RAD51	5888	MSKCC	GRCh37	15	40993338	40993338	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145617142		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	75	331	0	ENST00000267868.3:c.164C>T	p.Ala55Val	p.A55V	ENST00000267868	NM_002875.4	55	gCg/gTg																																																																															
RAD51	5888	MSKCC	GRCh37	15	41021806	41021806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	83	362	0	ENST00000267868.3:c.748C>T	p.Arg250Trp	p.R250W	ENST00000267868	NM_002875.4	250	Cgg/Tgg																																																																															
MGA	23269	MSKCC	GRCh37	15	42003059	42003059	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	89	439	0	ENST00000219905.7:c.2596C>T	p.Arg866Ter	p.R866*	ENST00000219905	NM_001164273.1	866	Cga/Tga																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	33	440	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	128	423	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500543	99500543	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777341351		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	94	559	0	ENST00000268035.6:c.3976G>A	p.Glu1326Lys	p.E1326K	ENST00000268035	NM_000875.3	1326	Gag/Aag																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	83	301	0	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347173	89347173	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	103	512	3	ENST00000301030.4:c.5777del	p.Pro1926ArgfsTer37	p.P1926Rfs*37	ENST00000301030	NM_001256183.1	1926	cCg/cg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687123	37687123	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1241477991		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	90	419	0	ENST00000447079.4:c.4027G>A	p.Gly1343Arg	p.G1343R	ENST00000447079	NM_015083.1	1343	Ggg/Agg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	144	509	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437530	56437531	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	73	457	0	ENST00000407977.2:c.931dup	p.Leu311ProfsTer132	p.L311Pfs*132	ENST00000407977		311	ctc/cCtc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	106	495	0	ENST00000407977.2:c.349del	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58678049	58678049	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1391305414		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	64	465	0	ENST00000305921.3:c.274T>C	p.Cys92Arg	p.C92R	ENST00000305921	NM_003620.3	92	Tgc/Cgc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59926513	59926513	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs747604569		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	86	362	0	ENST00000259008.2:c.484C>T	p.Arg162Ter	p.R162*	ENST00000259008	NM_032043.2	162	Cga/Tga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63526126	63526126	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs878854728		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	122	407	0	ENST00000307078.5:c.2500C>T	p.Arg834Trp	p.R834W	ENST00000307078	NM_004655.3	834	Cgg/Tgg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	78	406	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098434	11098434	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758091260		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	60	395	0	ENST00000344626.4:c.952G>A	p.Val318Ile	p.V318I	ENST00000344626	NM_003072.3	318	Gtc/Atc																																																																															
CALR	811	MSKCC	GRCh37	19	13051370	13051370	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1019627616		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	106	567	0	ENST00000316448.5:c.718G>A	p.Glu240Lys	p.E240K	ENST00000316448	NM_004343.3	240	Gag/Aag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291852	15291852	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	88	457	0	ENST00000263388.2:c.2914C>A	p.Leu972Ile	p.L972I	ENST00000263388	NM_000435.2	972	Cta/Ata																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354052	15354052	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753396296		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	26	332	0	ENST00000263377.2:c.2828C>T	p.Pro943Leu	p.P943L	ENST00000263377	NM_058243.2	943	cCg/cTg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622138	1622138	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370087169		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	95	544	0	ENST00000344749.5:c.737C>T	p.Pro246Leu	p.P246L	ENST00000344749	NM_001136139.2	246	cCg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227656	36227656	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368495518		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	86	432	0	ENST00000222270.7:c.7225C>T	p.Arg2409Trp	p.R2409W	ENST00000222270	NM_014727.1	2409	Cgg/Tgg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423781	47423781	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	123	491	0	ENST00000404338.3:c.1849C>T	p.Arg617Ter	p.R617*	ENST00000404338	NM_004491.4	617	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238941	5238941	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs913402227		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	91	428	0	ENST00000357368.4:c.1838C>T	p.Thr613Met	p.T613M	ENST00000357368	NM_002850.3	613	aCg/aTg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	59	472	0	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47604176	47604176	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs74531854		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	93	278	0	ENST00000263735.4:c.515C>T	p.Thr172Met	p.T172M	ENST00000263735	NM_002354.2	172	aCg/aTg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703590	47703590	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs63750398		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	88	422	0	ENST00000233146.2:c.2090G>A	p.Cys697Tyr	p.C697Y	ENST00000233146	NM_000251.2	697	tGt/tAt																																																																															
REL	5966	MSKCC	GRCh37	2	61149656	61149656	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	64	291	0	ENST00000295025.8:c.1851del	p.Gln618LysfsTer13	p.Q618Kfs*13	ENST00000295025	NM_002908.2	616	Ttt/tt																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29106001	29106001	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	67	211	0	ENST00000328354.6:c.839T>C	p.Leu280Pro	p.L280P	ENST00000328354	NM_007194.3	280	cTa/cCa																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279852	29279853	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	39	140	0	ENST00000544604.2:c.98_99insT	p.Pro34AlafsTer75	p.P34Afs*75	ENST00000544604	NM_001206998.1	33	ccg/ccTg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29440867	29440867	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1188411932		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	103	340	0	ENST00000544604.2:c.733C>T	p.Arg245Ter	p.R245*	ENST00000544604	NM_001206998.1	245	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851591	134851591	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748976557		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	68	376	0	ENST00000398015.3:c.997G>A	p.Val333Ile	p.V333I	ENST00000398015	NM_004441.4	333	Gtc/Atc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37053348	37053348	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1192414628		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	51	357	0	ENST00000231790.2:c.588del	p.Lys196AsnfsTer6	p.K196Nfs*6	ENST00000231790	NM_000249.3	195	Aaa/aa																																																																															
TET2	54790	MSKCC	GRCh37	4	106155778	106155779	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs759055581		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	87	507	0	ENST00000380013.4:c.685dup	p.Thr229AsnfsTer25	p.T229Nfs*25	ENST00000380013	NM_001127208.2	227	gaa/gAaa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	70	273	0	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99823108	99823108	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757655058		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	67	208	0	ENST00000280892.6:c.104C>T	p.Pro35Leu	p.P35L	ENST00000280892	NM_001130678.1	35	cCg/cTg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522578	176522578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	97	540	0	ENST00000292408.4:c.1675C>T	p.Arg559Trp	p.R559W	ENST00000292408	NM_213647.1	559	Cgg/Tgg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200369	138200369	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs946809001		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			732	126	561	2	ENST00000237289.4:c.1787G>A	p.Arg596Gln	p.R596Q	ENST00000237289	NM_001270507.1	596	cGg/cAg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287889	33287891	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-	rs749346133		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	65	492	0	ENST00000374542.5:c.1362_1364del	p.Glu457del	p.E457del	ENST00000374542	NM_001141970.1	454	gaAGAg/gag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508274	106508274	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778022267		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	99	440	0	ENST00000359195.3:c.268C>T	p.Arg90Trp	p.R90W	ENST00000359195	NM_002649.2	90	Cgg/Tgg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38272338	38272338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	113	500	0	ENST00000425967.3:c.2029C>T	p.Arg677Trp	p.R677W	ENST00000425967	NM_001174067.1	677	Cgg/Tgg																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	79	299	3	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020764	37020764	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	61	402	1	ENST00000358127.4:c.81del	p.Phe27LeufsTer2	p.F27Lfs*2	ENST00000358127	NM_001280556.1	27	ttT/tt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411530	63411530	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	82	460	0	ENST00000330258.3:c.1637del	p.Leu546CysfsTer16	p.L546Cfs*16	ENST00000330258	NM_152424.3	546	tTg/tg																																																																															
MED12	9968	MSKCC	GRCh37	X	70357181	70357181	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867804014		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	86	471	0	ENST00000374080.3:c.5696G>A	p.Arg1899Gln	p.R1899Q	ENST00000374080		1899	cGg/cAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76855019	76855019	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	114	352	1	ENST00000373344.5:c.5817del	p.Asp1940IlefsTer15	p.D1940Ifs*15	ENST00000373344	NM_000489.3	1939	aaA/aa																																																																															
PGR	5241	MSKCC	GRCh37	11	100999594	100999595	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	80	470	0	ENST00000325455.5:c.207dup	p.Ser70LeufsTer22	p.S70Lfs*22	ENST00000325455	NM_001202474.3	69	-/C																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137193	64137193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	85	421	0	ENST00000334205.4:c.1625C>T	p.Thr542Met	p.T542M	ENST00000334205	NM_003942.2	542	aCg/aTg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416218	416218	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368037236		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	88	441	0	ENST00000399788.2:c.3968G>A	p.Arg1323Gln	p.R1323Q	ENST00000399788	NM_001042603.1	1323	cGg/cAg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427603	427603	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	34	436	0	ENST00000399788.2:c.2566T>A	p.Phe856Ile	p.F856I	ENST00000399788	NM_001042603.1	856	Ttt/Att																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562369	95562369	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs549532374		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	42	451	0	ENST00000343455.3:c.4888C>T	p.Arg1630Cys	p.R1630C	ENST00000343455	NM_177438.2	1630	Cgc/Tgc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2100451	2100451	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	91	348	0	ENST00000219476.3:c.189G>T	p.Gln63His	p.Q63H	ENST00000219476	NM_000548.3	63	caG/caT																																																																															
NF1	4763	MSKCC	GRCh37	17	29490319	29490319	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060500244		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	85	362	0	ENST00000358273.4:c.404G>A	p.Arg135Gln	p.R135Q	ENST00000358273	NM_001042492.2	135	cGg/cAg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17940996	17940996	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	86	470	0	ENST00000458235.1:c.3128A>G	p.Asp1043Gly	p.D1043G	ENST00000458235	NM_000215.3	1043	gAt/gGt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217888	2217888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	97	423	0	ENST00000398665.3:c.2662G>A	p.Val888Met	p.V888M	ENST00000398665	NM_032482.2	888	Gtg/Atg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47698134	47698135	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	86	333	0	ENST00000233146.2:c.1697dup	p.Asn566LysfsTer2	p.N566Kfs*2	ENST00000233146	NM_000251.2	564	-/A																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275246	41275246	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	102	428	0	ENST00000349496.5:c.1412T>C	p.Leu471Pro	p.L471P	ENST00000349496	NM_001904.3	471	cTg/cCg																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73112879	73112879	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	81	306	0	ENST00000356692.5:c.475T>A	p.Ser159Thr	p.S159T	ENST00000356692		159	Tca/Aca																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158425	26158426	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	126	385	0	ENST00000289316.2:c.32dup	p.Lys13GlufsTer9	p.K13Efs*9	ENST00000289316	NM_138720.2	10	gcc/gCcc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30676021	30676021	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	104	430	0	ENST00000376406.3:c.2335C>A	p.Leu779Met	p.L779M	ENST00000376406	NM_014641.2	779	Ctg/Atg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32181465	32181465	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	69	382	0	ENST00000375023.3:c.2320G>T	p.Ala774Ser	p.A774S	ENST00000375023	NM_004557.3	774	Gcc/Tcc																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194746	29194746	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	102	465	0	ENST00000240100.2:c.982C>A	p.Leu328Met	p.L328M	ENST00000240100	NM_001394.6	328	Ctg/Atg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128201213	128201213	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376682143		P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	87	375	1	ENST00000265960.3:c.1522C>T	p.Arg508Cys	p.R508C	ENST00000265960	NM_001006617.1	508	Cgt/Tgt																																																																															
ABL1	25	MSKCC	GRCh37	9	133760657	133760657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	97	555	0	ENST00000318560.5:c.2983del	p.Asp995ThrfsTer74	p.D995Tfs*74	ENST00000318560	NM_005157.4	994	Ggg/gg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123200287	123200287	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	93	299	0	ENST00000218089.9:c.2265+1G>A		p.X755_splice	ENST00000218089	NM_001042749.1	755																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44929437	44929437	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	102	464	0	ENST00000377967.4:c.2537G>T	p.Ser846Ile	p.S846I	ENST00000377967	NM_021140.2	846	aGc/aTc																																																																															
MED12	9968	MSKCC	GRCh37	X	70361159	70361159	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076884-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	138	593	0	ENST00000374080.3:c.6347A>G	p.His2116Arg	p.H2116R	ENST00000374080		2116	cAc/cGc																																																																															
SRC	6714	MSKCC	GRCh37	20	36031708	36031708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	88	508	0	ENST00000358208.4:c.1537G>A	p.Glu513Lys	p.E513K	ENST00000358208		513	Gag/Aag																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981516	70981516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	85	480	0	ENST00000276594.2:c.580C>T	p.Arg194Trp	p.R194W	ENST00000276594	NM_024504.3	194	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971119	21971120	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0076887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	154	469	0	ENST00000304494.5:c.238dup	p.Arg80ProfsTer40	p.R80Pfs*40	ENST00000304494	NM_000077.4	80	cga/cCga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0076887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	164	273	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578255	7578255	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	113	514	0	ENST00000269305.4:c.594del	p.Gly199GlufsTer48	p.G199Efs*48	ENST00000269305	NM_001126112.2	198	gaA/ga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3828062	3828062	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375125948		P-0076887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	77	365	0	ENST00000262367.5:c.2063C>T	p.Pro688Leu	p.P688L	ENST00000262367	NM_004380.2	688	cCg/cTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691856	30691856	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0076887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	87	427	0	ENST00000359013.4:c.433A>T	p.Lys145Ter	p.K145*	ENST00000359013	NM_001024847.2	145	Aag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273025	55273025	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	52	347	0	ENST00000275493.2:c.3348C>G	p.Asn1116Lys	p.N1116K	ENST00000275493	NM_005228.3	1116	aaC/aaG																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427279	427279	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	58	275	0	ENST00000399788.2:c.2890C>G	p.Gln964Glu	p.Q964E	ENST00000399788	NM_001042603.1	964	Cag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577537	7577538	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0076894-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			427	167	426	1	ENST00000269305.4:c.743_744delinsTT	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGG/cTT																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467927	50467927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076894-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			856	62	529	0	ENST00000331340.3:c.1162G>A	p.Ala388Thr	p.A388T	ENST00000331340	NM_006060.4	388	Gcg/Acg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497212	149497212	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772895326		P-0076894-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			690	47	452	0	ENST00000261799.4:c.3106G>A	p.Gly1036Ser	p.G1036S	ENST00000261799	NM_002609.3	1036	Ggc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242487	+	protein_altering_variant	In_Frame_Del	DEL	GAATTAAGAGAAGCAACATCTC	GAATTAAGAGAAGCAACATCTC	ATCT			P-0076894-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			534	140	389	2	ENST00000275493.2:c.2236_2257delinsATCT	p.Glu746_Pro753delinsIleSer	p.E746_P753delinsIS	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCAACATCTCcg/ATCTcg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37882820	37882820	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076894-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			616	169	455	1	ENST00000269571.5:c.2878A>C	p.Met960Leu	p.M960L	ENST00000269571		960	Atg/Ctg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076897-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			280	86	241	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577574	64578551	+	splice_acceptor_variant,splice_donor_variant,start_lost,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	AGCCCCATGGCGGCGGGCGGTGGGCGGCGGCCTGCAAGGCAAGCCGGGGGAGGGAGGGTCGGGCAGGTTCGGCCGGGGAGCCTCCTCCCAGGGTCCGCTAAGGTTCCACCCGCCCCGACACACGCACAGCTCCCCTGCTTCCCCACCCTCTTCAGCCTCTGCTCACCGGCTTCCCCTCTTTTGTCGGTGAGACCCCTCAGCCGAGACTGCAGAGCCTTTTTGTCCCCCACAATTCCGGGACGCCCGGTACCCGATGGGGTGCGCCCCAAGCACCCCAATGAGGAGCCCCAATGGCCGCCCCGCCCCCTCTCTACGACTGTGCCCCCGGGGCTGTAAAGTCTGTCCAGAAAGCGCACCCAGGTCAAGCCCCCAAACCCCAAGGAGAGTCCTGGCCTCGGTCCCCCTCGCCCACCTCCGCGCTTACATCCCACACTAGGCACCGCGGCGCACGCCGCCCGGAGCCTGCTGGGACATGAAGTCCCGCCCCTAGGGTCGCACTACCCGCCGGGAAGTGGAGTCTGGGCCCACCCCTGCCCCGCTGAGCCTGGAAATAGTGGCGGGCCGGGCCGCTGCGCTGTGGCTTCTGGGATCTCTAGGTCCGCGGCTCCGGACACCTCCTTCCCGAGATACTCAGGGATTGGCCCTTCCCTTCAGGCCGACCAGGCAGGAAGCGTGCCCGCAGTGCCTTCTGGAAAATGTAGTCCGGGGGCACTACCTGCAGACTCGGGGTGGGAGGTCGCCGAGCTTCTGCCGGTTTTGCTGTCACGGGTCGGTCGGCAAGTTATGAGGAAAAAGATCAGGTTGCTTGATCCAGAAAAAATTAAAATAAAACAATATGAGAAAAACAGATACTTTTAAACACTGCCAGAGAGTAAATGTGTTCAGCCGCTTTAGCTGGGTATCAGTGTCTGTTAACATATAAAGATGCCTACTCTGTGTGCAGCACTCGTTTCCCACTTCCGCCCGCGAGATACTCTA	AGCCCCATGGCGGCGGGCGGTGGGCGGCGGCCTGCAAGGCAAGCCGGGGGAGGGAGGGTCGGGCAGGTTCGGCCGGGGAGCCTCCTCCCAGGGTCCGCTAAGGTTCCACCCGCCCCGACACACGCACAGCTCCCCTGCTTCCCCACCCTCTTCAGCCTCTGCTCACCGGCTTCCCCTCTTTTGTCGGTGAGACCCCTCAGCCGAGACTGCAGAGCCTTTTTGTCCCCCACAATTCCGGGACGCCCGGTACCCGATGGGGTGCGCCCCAAGCACCCCAATGAGGAGCCCCAATGGCCGCCCCGCCCCCTCTCTACGACTGTGCCCCCGGGGCTGTAAAGTCTGTCCAGAAAGCGCACCCAGGTCAAGCCCCCAAACCCCAAGGAGAGTCCTGGCCTCGGTCCCCCTCGCCCACCTCCGCGCTTACATCCCACACTAGGCACCGCGGCGCACGCCGCCCGGAGCCTGCTGGGACATGAAGTCCCGCCCCTAGGGTCGCACTACCCGCCGGGAAGTGGAGTCTGGGCCCACCCCTGCCCCGCTGAGCCTGGAAATAGTGGCGGGCCGGGCCGCTGCGCTGTGGCTTCTGGGATCTCTAGGTCCGCGGCTCCGGACACCTCCTTCCCGAGATACTCAGGGATTGGCCCTTCCCTTCAGGCCGACCAGGCAGGAAGCGTGCCCGCAGTGCCTTCTGGAAAATGTAGTCCGGGGGCACTACCTGCAGACTCGGGGTGGGAGGTCGCCGAGCTTCTGCCGGTTTTGCTGTCACGGGTCGGTCGGCAAGTTATGAGGAAAAAGATCAGGTTGCTTGATCCAGAAAAAATTAAAATAAAACAATATGAGAAAAACAGATACTTTTAAACACTGCCAGAGAGTAAATGTGTTCAGCCGCTTTAGCTGGGTATCAGTGTCTGTTAACATATAAAGATGCCTACTCTGTGTGCAGCACTCGTTTCCCACTTCCGCCCGCGAGATACTCTA	-			P-0076897-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			193	46	293	0	ENST00000337652.1:c.-289_8del		p.X97_splice	ENST00000337652	NM_130803.2	97																																																																																
NKX2-1	7080	MSKCC	GRCh37	14	36988339	36988340	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0076897-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			145	35	356	0	ENST00000354822.5:c.312_313dup	p.Val105GlyfsTer21	p.V105Gfs*21	ENST00000354822	NM_001079668.2	105	gtg/gGGtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0076901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	28	173	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266709	198266709	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0076904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	148	258	0	ENST00000335508.6:c.2223G>T	p.Lys741Asn	p.K741N	ENST00000335508	NM_012433.2	741	aaG/aaT																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633620	69633620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	40	297	0	ENST00000334134.2:c.82G>A	p.Asp28Asn	p.D28N	ENST00000334134	NM_005247.2	28	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7574027	7574027	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882028		P-0076904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	165	330	0	ENST00000269305.4:c.1000G>T	p.Gly334Trp	p.G334W	ENST00000269305	NM_001126112.2	334	Ggg/Tgg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197710	66197710	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs147053536		P-0076904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	40	223	0	ENST00000273854.3:c.2989G>T	p.Val997Leu	p.V997L	ENST00000273854	NM_004439.5	997	Gtg/Ttg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2977562	2977562	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	105	273	0	ENST00000396946.4:c.1122G>T	p.Glu374Asp	p.E374D	ENST00000396946	NM_032415.4	374	gaG/gaT																																																																															
ATM	472	MSKCC	GRCh37	11	108121601	108121601	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0076904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	65	330	0	ENST00000278616.4:c.1409C>G	p.Ser470Ter	p.S470*	ENST00000278616	NM_000051.3	470	tCa/tGa																																																																															
RET	5979	MSKCC	GRCh37	10	43615182	43615182	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	61	449	0	ENST00000355710.3:c.2596G>T	p.Ala866Ser	p.A866S	ENST00000355710	NM_020975.4	866	Gcc/Tcc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87549178	87549178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	106	305	0	ENST00000277120.3:c.1735G>A	p.Glu579Lys	p.E579K	ENST00000277120		579	Gag/Aag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180052953	180052953	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	85	492	0	ENST00000261937.6:c.1337C>A	p.Thr446Lys	p.T446K	ENST00000261937	NM_182925.4	446	aCg/aAg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023094	31023094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	68	462	0	ENST00000375687.4:c.2579G>A	p.Arg860Lys	p.R860K	ENST00000375687	NM_015338.5	860	aGa/aAa																																																																															
ALK	238	MSKCC	GRCh37	2	29543688	29543688	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	264	497	0	ENST00000389048.3:c.1475G>C	p.Gly492Ala	p.G492A	ENST00000389048	NM_004304.4	492	gGc/gCc																																																																															
HGF	3082	MSKCC	GRCh37	7	81358998	81358998	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs867142642		P-0076904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	113	268	0	ENST00000222390.5:c.963G>T	p.Trp321Cys	p.W321C	ENST00000222390	NM_000601.4	321	tgG/tgT																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679997	33679997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	140	353	0	ENST00000308377.4:c.2084C>T	p.Pro695Leu	p.P695L	ENST00000308377	NM_152270.3	695	cCa/cTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538262	187538262	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	83	199	0	ENST00000441802.2:c.8972A>T	p.Asn2991Ile	p.N2991I	ENST00000441802	NM_005245.3	2991	aAt/aTt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161430	55161430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	71	316	0	ENST00000257290.5:c.3261C>A	p.Ser1087Arg	p.S1087R	ENST00000257290	NM_006206.4	1087	agC/agA																																																																															
CUL3	8452	MSKCC	GRCh37	2	225400292	225400292	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	109	185	0	ENST00000264414.4:c.331G>T	p.Asp111Tyr	p.D111Y	ENST00000264414	NM_003590.4	111	Gat/Tat																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0076905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	291	347	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0076905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	136	363	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0076905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	285	463	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455091	50455091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1422790468		P-0076905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	87	290	0	ENST00000331340.3:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000331340	NM_006060.4	213	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138729528		P-0076905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	263	425	0	ENST00000269305.4:c.523C>T	p.Arg175Cys	p.R175C	ENST00000269305	NM_001126112.2	175	Cgc/Tgc																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51510777	51510779	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs762147792		P-0076905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	107	223	0	ENST00000260433.2:c.702_704del	p.Phe235del	p.F235del	ENST00000260433		234	ttCTTt/ttt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114799812	114799812	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	139	242	0	ENST00000543371.1:c.479A>T	p.Asp160Val	p.D160V	ENST00000543371	NM_001198531.1	160	gAt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112116496	112116496	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs863225366		P-0076905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	43	209	0	ENST00000257430.4:c.541C>T	p.Gln181Ter	p.Q181*	ENST00000257430	NM_000038.5	181	Caa/Taa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71090498	71090498	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	116	364	0	ENST00000318789.4:c.850C>A	p.His284Asn	p.H284N	ENST00000318789	NM_032682.5	284	Cac/Aac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210408	36210408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	129	404	0	ENST00000222270.7:c.401C>T	p.Pro134Leu	p.P134L	ENST00000222270	NM_014727.1	134	cCc/cTc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375096	31375096	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1286287492		P-0076905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1315	100	436	0	ENST00000328111.2:c.493T>C	p.Tyr165His	p.Y165H	ENST00000328111	NM_006892.3	165	Tac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587782082		P-0076906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	161	330	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0076906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	93	267	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0076906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	174	286	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484596	57484596	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913494		P-0076906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	80	460	0	ENST00000371085.3:c.680A>T	p.Gln227Leu	p.Q227L	ENST00000371085	NM_000516.4	227	cAg/cTg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664864	138664893	+	inframe_deletion	In_Frame_Del	DEL	GCGGCTGCAGCCGCAGCTGCTGCAGCCGCT	GCGGCTGCAGCCGCAGCTGCTGCAGCCGCT	-	rs752956127		P-0076906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	34	269	3	ENST00000330315.3:c.672_701del	p.Ala225_Ala234del	p.A225_A234del	ENST00000330315	NM_023067.3	224	gcAGCGGCTGCAGCAGCTGCGGCTGCAGCCGCg/gcg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600480	10600501	+	frameshift_variant	Frame_Shift_Del	DEL	GTGTCAGCATTGGGGCCACCAA	GTGTCAGCATTGGGGCCACCAA	-			P-0076906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	123	396	0	ENST00000171111.5:c.1354_1375del	p.Leu452GlufsTer41	p.L452Efs*41	ENST00000171111	NM_203500.1	452	TTGGTGGCCCCAATGCTGACACga/ga																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001429	29001429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	49	353	0	ENST00000282397.4:c.1303G>T	p.Val435Leu	p.V435L	ENST00000282397	NM_002019.4	435	Gtg/Ttg																																																																															
PARP1	142	MSKCC	GRCh37	1	226567646	226567647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1159330096		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1552	317	392	1	ENST00000366794.5:c.1519dup	p.Ser507LysfsTer14	p.S507Kfs*14	ENST00000366794	NM_001618.3	507	agc/aAgc																																																																															
MPL	4352	MSKCC	GRCh37	1	43818415	43818415	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	301	397	1	ENST00000372470.3:c.1880T>C	p.Leu627Pro	p.L627P	ENST00000372470	NM_005373.2	627	cTa/cCa																																																																															
BCL10	8915	MSKCC	GRCh37	1	85736511	85736511	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs587776639		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	254	297	8	ENST00000370580.1:c.136del	p.Ile46TyrfsTer24	p.I46Yfs*24	ENST00000370580	NM_003921.4	46	Ata/ta																																																																															
PGR	5241	MSKCC	GRCh37	11	100998597	100998597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	284	368	0	ENST00000325455.5:c.1205G>A	p.Arg402His	p.R402H	ENST00000325455	NM_001202474.3	402	cGt/cAt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307393	118307394	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	95	220	2	ENST00000534358.1:c.173dup	p.Ala59GlyfsTer88	p.A59Gfs*88	ENST00000534358	NM_005933.3	56	tcc/tCcc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939260	71939260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	304	422	0	ENST00000298229.2:c.209G>A	p.Arg70His	p.R70H	ENST00000298229	NM_001567.3	70	cGc/cAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	281	386	0	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
GAB2	9846	MSKCC	GRCh37	11	77937657	77937657	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749634672		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	157	237	0	ENST00000361507.4:c.1061G>A	p.Arg354His	p.R354H	ENST00000361507	NM_080491.2	354	cGc/cAc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	269	390	2	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18573894	18573894	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759658584		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	90	206	0	ENST00000266497.5:c.2212C>T	p.Arg738Cys	p.R738C	ENST00000266497		738	Cgt/Tgt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416952	416953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs771545848		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	259	368	1	ENST00000399788.2:c.3597dup	p.Gly1200ArgfsTer7	p.G1200Rfs*7	ENST00000399788	NM_001042603.1	1199	-/A																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438204	49438204	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761386159		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	257	323	0	ENST00000301067.7:c.5065C>T	p.Arg1689Cys	p.R1689C	ENST00000301067	NM_003482.3	1689	Cgt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	269	377	1	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563204	21563204	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769991034		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	267	434	0	ENST00000382592.4:c.715G>A	p.Val239Ile	p.V239I	ENST00000382592	NM_014572.2	239	Gta/Ata																																																																															
CDK8	1024	MSKCC	GRCh37	13	26971322	26971322	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	78	171	0	ENST00000381527.3:c.897del	p.Lys299AsnfsTer23	p.K299Nfs*23	ENST00000381527	NM_001260.1	298	gAa/ga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807815	3807815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	208	301	1	ENST00000262367.5:c.3604C>T	p.Arg1202Cys	p.R1202C	ENST00000262367	NM_004380.2	1202	Cgc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	301	400	1	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619310	37619310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	282	394	1	ENST00000447079.4:c.986G>A	p.Arg329Gln	p.R329Q	ENST00000447079	NM_015083.1	329	cGa/cAa																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	555	366	4	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40459723	40459723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	312	397	0	ENST00000345506.4:c.1888G>A	p.Ala630Thr	p.A630T	ENST00000345506	NM_003152.3	630	Gcc/Acc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246554	41246554	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80357176		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	247	314	0	ENST00000357654.3:c.994C>T	p.Arg332Trp	p.R332W	ENST00000357654	NM_007294.3	332	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	576	453	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532517	63532517	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	255	409	0	ENST00000307078.5:c.2062del	p.Leu688Ter	p.L688*	ENST00000307078	NM_004655.3	688	Ctg/tg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7990637	7990637	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	188	269	0	ENST00000319144.4:c.124G>T	p.Gly42Trp	p.G42W	ENST00000319144	NM_001139.2	42	Ggg/Tgg																																																																															
STK11	6794	MSKCC	GRCh37	19	1218414	1218414	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs876658584		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	249	362	0	ENST00000326873.7:c.291-2A>G		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																																
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	549	421	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503884	47503884	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			715	238	347	2	ENST00000404338.3:c.4444del	p.Gln1482SerfsTer317	p.Q1482Sfs*317	ENST00000404338	NM_004491.4	1480	aCc/ac																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	247	383	5	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
CASP8	841	MSKCC	GRCh37	2	202137461	202137461	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	258	314	0	ENST00000358485.4:c.689T>C	p.Leu230Pro	p.L230P	ENST00000358485	NM_001080125.1	230	cTg/cCg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660807	227660808	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs755468274		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	189	436	1	ENST00000305123.5:c.2645_2647dup	p.Gln882dup	p.Q882dup	ENST00000305123	NM_005544.2	882	ccc/cAGCcc																																																																															
ALK	238	MSKCC	GRCh37	2	29450540	29450540	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	295	328	0	ENST00000389048.3:c.2816-2A>G		p.X939_splice	ENST00000389048	NM_004304.4	939																																																																																
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	276	360	12	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99172034	99172034	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	304	383	0	ENST00000074304.5:c.1600G>A	p.Val534Met	p.V534M	ENST00000074304	NM_001134224.1	534	Gtg/Atg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	239	395	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
SRC	6714	MSKCC	GRCh37	20	36012773	36012773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	235	313	1	ENST00000358208.4:c.217G>A	p.Val73Ile	p.V73I	ENST00000358208		73	Gtc/Atc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204842	128204842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1294458213		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	244	411	0	ENST00000341105.2:c.599del	p.Gly200ValfsTer18	p.G200Vfs*18	ENST00000341105	NM_032638.4	200	gGt/gt																																																																															
ATR	545	MSKCC	GRCh37	3	142217557	142217557	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	164	266	0	ENST00000350721.4:c.5440del	p.Arg1814GlufsTer10	p.R1814Efs*10	ENST00000350721	NM_001184.3	1814	Aga/ga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	486	313	16	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715649	30715649	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	256	339	0	ENST00000359013.4:c.1382T>C	p.Leu461Ser	p.L461S	ENST00000359013	NM_001024847.2	461	tTg/tCg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070349	37070349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1220422495		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	248	343	0	ENST00000231790.2:c.1489del	p.Arg497GlyfsTer11	p.R497Gfs*11	ENST00000231790	NM_000249.3	495	aCc/ac																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278079	41278079	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1031583127		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	333	384	0	ENST00000349496.5:c.1955C>T	p.Ala652Val	p.A652V	ENST00000349496	NM_001904.3	652	gCg/gTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549698	187549699	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	186	296	0	ENST00000441802.2:c.4542_4543del	p.Thr1516PhefsTer2	p.T1516Ffs*2	ENST00000441802	NM_005245.3	1514	ctCTat/ctat																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435879	149435879	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs281860281		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	262	348	0	ENST00000286301.3:c.2345G>A	p.Arg782His	p.R782H	ENST00000286301	NM_005211.3	782	cGt/cAt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180045902	180045902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	304	411	0	ENST00000261937.6:c.2869C>T	p.Arg957Cys	p.R957C	ENST00000261937	NM_182925.4	957	Cgc/Tgc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048157	180048157	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768465100		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	281	397	0	ENST00000261937.6:c.2116G>A	p.Ala706Thr	p.A706T	ENST00000261937	NM_182925.4	706	Gcg/Acg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	181	257	0	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
FYN	2534	MSKCC	GRCh37	6	112025267	112025267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	225	300	0	ENST00000368678.4:c.482G>A	p.Arg161Gln	p.R161Q	ENST00000368678		161	cGa/cAa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129157	152129157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	243	319	0	ENST00000206249.3:c.110G>A	p.Arg37Gln	p.R37Q	ENST00000206249	NM_000125.3	37	cGg/cAg																																																																															
SMO	6608	MSKCC	GRCh37	7	128849133	128849133	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	406	303	0	ENST00000249373.3:c.1365del	p.Phe455LeufsTer40	p.F455Lfs*40	ENST00000249373	NM_005631.4	454	aTt/at																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	186	229	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	260	306	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	144	248	2	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230472931	230472931	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376106086		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	1287	342	0	ENST00000525115.1:c.791C>T	p.Ala264Val	p.A264V	ENST00000525115		264	gCg/gTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514894	103514894	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	303	422	0	ENST00000355739.4:c.1395A>T	p.Arg465Ser	p.R465S	ENST00000355739	NM_000123.3	465	agA/agT																																																																															
MGA	23269	MSKCC	GRCh37	15	42058253	42058253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	264	320	0	ENST00000219905.7:c.7973C>A	p.Ala2658Asp	p.A2658D	ENST00000219905	NM_001164273.1	2658	gCc/gAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3828145	3828145	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	207	212	0	ENST00000262367.5:c.1980G>T	p.Lys660Asn	p.K660N	ENST00000262367	NM_004380.2	660	aaG/aaT																																																																															
NUP93	9688	MSKCC	GRCh37	16	56792463	56792463	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	206	279	0	ENST00000308159.5:c.193G>A	p.Gly65Arg	p.G65R	ENST00000308159	NM_014669.4	65	Ggg/Agg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210669	2210669	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773997638		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	601	408	1	ENST00000398665.3:c.1166C>T	p.Pro389Leu	p.P389L	ENST00000398665	NM_032482.2	389	cCg/cTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7128931	7128931	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	209	297	0	ENST00000302850.5:c.2877C>G	p.Ile959Met	p.I959M	ENST00000302850	NM_000208.2	959	atC/atG																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488760	212488760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	330	328	0	ENST00000342788.4:c.2089C>T	p.Pro697Ser	p.P697S	ENST00000342788	NM_005235.2	697	Cca/Tca																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989478	212989478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1254576147		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	236	305	0	ENST00000342788.4:c.233G>A	p.Arg78Gln	p.R78Q	ENST00000342788	NM_005235.2	78	cGg/cAg																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631463	67631463	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	155	319	1	ENST00000272342.5:c.1653del	p.Phe551LeufsTer6	p.F551Lfs*6	ENST00000272342	NM_019002.3	550	cTt/ct																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40899091	40899091	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	166	230	0	ENST00000373198.4:c.2179C>T	p.Pro727Ser	p.P727S	ENST00000373198	NM_133170.3	727	Cca/Tca																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45651319	45651319	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs201462822		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	277	342	0	ENST00000407780.3:c.706A>G	p.Ile236Val	p.I236V	ENST00000407780	NM_001283052.1	236	Atc/Gtc																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655434	45655434	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755328093		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	287	333	0	ENST00000407780.3:c.418G>A	p.Val140Met	p.V140M	ENST00000407780	NM_001283052.1	140	Gtg/Atg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656932	45656932	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	330	379	0	ENST00000407780.3:c.224del	p.Asn75ThrfsTer11	p.N75Tfs*11	ENST00000407780	NM_001283052.1	75	aAc/ac																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430272	181430272	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	206	287	0	ENST00000325404.1:c.124A>G	p.Lys42Glu	p.K42E	ENST00000325404	NM_003106.3	42	Aag/Gag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277254	41277254	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	210	350	0	ENST00000349496.5:c.1723G>C	p.Gly575Arg	p.G575R	ENST00000349496	NM_001904.3	575	Gga/Cga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636934	176636934	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1257546763		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	298	401	0	ENST00000439151.2:c.1534A>G	p.Lys512Glu	p.K512E	ENST00000439151	NM_022455.4	512	Aaa/Gaa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31466387	31466387	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	138	244	0	ENST00000344624.3:c.2368T>C	p.Tyr790His	p.Y790H	ENST00000344624		790	Tac/Cac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891162	151891162	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587778491		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	515	312	0	ENST00000262189.6:c.4592C>T	p.Ala1531Val	p.A1531V	ENST00000262189	NM_170606.2	1531	gCg/gTg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141572663	141572663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			728	302	336	0	ENST00000220592.5:c.407C>T	p.Ser136Phe	p.S136F	ENST00000220592	NM_012154.3	136	tCc/tTc																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194641	29194641	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	242	331	0	ENST00000240100.2:c.1087C>T	p.Gln363Ter	p.Q363*	ENST00000240100	NM_001394.6	363	Cag/Tag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69009258	69009258	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	198	242	0	ENST00000288368.4:c.2375T>C	p.Ile792Thr	p.I792T	ENST00000288368	NM_024870.2	792	aTt/aCt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135804225	135804225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	300	380	0	ENST00000298552.3:c.35C>T	p.Ala12Val	p.A12V	ENST00000298552	NM_001162426.1	12	gCc/gTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139408987	139408987	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771222092		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	256	357	1	ENST00000277541.6:c.2182G>A	p.Gly728Arg	p.G728R	ENST00000277541	NM_017617.3	728	Ggg/Agg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197888	123197888	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	153	212	0	ENST00000218089.9:c.2012A>G	p.Asp671Gly	p.D671G	ENST00000218089	NM_001042749.1	671	gAt/gGt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921459	39921459	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1018691198		P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	278	297	0	ENST00000378444.4:c.4361G>A	p.Arg1454Gln	p.R1454Q	ENST00000378444	NM_001123385.1	1454	cGg/cAg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53244985	53244985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	249	311	0	ENST00000375401.3:c.955G>A	p.Ala319Thr	p.A319T	ENST00000375401	NM_004187.3	319	Gcc/Acc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0076911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	147	358	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931589		P-0076911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	234	431	0	ENST00000349496.5:c.101G>A	p.Gly34Glu	p.G34E	ENST00000349496	NM_001904.3	34	gGa/gAa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287446	46287446	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs774801990		P-0076911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	107	262	0	ENST00000334344.6:c.5305C>T	p.Arg1769Ter	p.R1769*	ENST00000334344	NM_152641.2	1769	Cga/Tga																																																																															
MED12	9968	MSKCC	GRCh37	X	70347969	70347969	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0076911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	172	444	0	ENST00000374080.3:c.3208A>G	p.Arg1070Gly	p.R1070G	ENST00000374080		1070	Agg/Ggg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575191	48575191	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	18	295	0	ENST00000342988.3:c.385A>T	p.Asn129Tyr	p.N129Y	ENST00000342988	NM_005359.5	129	Aat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	112	326	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577088	7577089	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0076918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	74	639	0	ENST00000269305.4:c.848_849dup	p.Thr284AlafsTer62	p.T284Afs*62	ENST00000269305	NM_001126112.2	283	-/GC																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753957	57753957	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	36	384	0	ENST00000274289.3:c.667del	p.Asp223ThrfsTer8	p.D223Tfs*8	ENST00000274289	NM_006622.3	223	Gac/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0076922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	316	359	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0076922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	239	346	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	256	259	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	247	293	0	ENST00000257430.4:c.4473del	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
MTOR	2475	MSKCC	GRCh37	1	11217330	11217330	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	251	302	0	ENST00000361445.4:c.4348T>G	p.Tyr1450Asp	p.Y1450D	ENST00000361445	NM_004958.3	1450	Tat/Gat																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149499064	149499064	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143067190		P-0076922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	236	330	0	ENST00000261799.4:c.2764C>T	p.Arg922Cys	p.R922C	ENST00000261799	NM_002609.3	922	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0076922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	184	211	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36938140	36938140	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs559297734		P-0076922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	198	337	0	ENST00000361632.4:c.821G>A	p.Arg274His	p.R274H	ENST00000361632		274	cGt/cAt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508820	106508820	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	139	361	0	ENST00000359195.3:c.814C>G	p.Leu272Val	p.L272V	ENST00000359195	NM_002649.2	272	Ctg/Gtg																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518283	204518283	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	354	296	0	ENST00000367182.3:c.946A>G	p.Ser316Gly	p.S316G	ENST00000367182	NM_001278516.1	316	Agc/Ggc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78896570	78896570	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0076922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	135	301	0	ENST00000306801.3:c.2567T>G	p.Leu856Arg	p.L856R	ENST00000306801	NM_020761.2	856	cTc/cGc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120313	94120313	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	115	343	0	ENST00000369303.4:c.738del	p.Arg247GlyfsTer11	p.R247Gfs*11	ENST00000369303	NM_004440.3	246	ccC/cc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625293	69625293	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	61	345	0	ENST00000334134.2:c.500T>A	p.Phe167Tyr	p.F167Y	ENST00000334134	NM_005247.2	167	tTc/tAc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141542201	141542202	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0076922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	104	298	1	ENST00000220592.5:c.2521_2522delinsTT	p.Ala841Leu	p.A841L	ENST00000220592	NM_012154.3	841	GCa/TTa																																																																															
ERF	2077	MSKCC	GRCh37	19	42754575	42754575	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	261	388	0	ENST00000222329.4:c.165C>A	p.Phe55Leu	p.F55L	ENST00000222329	NM_006494.2	55	ttC/ttA																																																																															
NADK	65220	MSKCC	GRCh37	1	1696788	1696788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	238	270	0	ENST00000341426.5:c.58G>A	p.Ala20Thr	p.A20T	ENST00000341426	NM_023018.4	20	Gct/Act																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0076923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	35	336	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023492	27023492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	23	305	0	ENST00000324856.7:c.598C>T	p.Gln200Ter	p.Q200*	ENST00000324856	NM_006015.4	200	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	81	376	0	ENST00000269305.4:c.434T>A	p.Leu145Gln	p.L145Q	ENST00000269305	NM_001126112.2	145	cTg/cAg																																																																															
KDR	3791	MSKCC	GRCh37	4	55961103	55961103	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140041720		P-0076923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	56	277	0	ENST00000263923.4:c.2837G>A	p.Arg946His	p.R946H	ENST00000263923	NM_002253.2	946	cGt/cAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971104	21971105	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0076923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	54	331	0	ENST00000304494.5:c.253_254del	p.Ala85CysfsTer34	p.A85Cfs*34	ENST00000304494	NM_000077.4	85	GCt/t																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	33	187	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0076927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	20	467	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0076928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	153	424	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591881	48591882	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0076928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	166	377	0	ENST00000342988.3:c.1045dup	p.Thr349AsnfsTer3	p.T349Nfs*3	ENST00000342988	NM_005359.5	348	-/A																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	154	257	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022403	31022425	+	frameshift_variant	Frame_Shift_Del	DEL	CACCACTGCCATAGAGAGGCGGC	CACCACTGCCATAGAGAGGCGGC	-	rs766433101		P-0076930-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	88	656	0	ENST00000375687.4:c.1900_1922del	p.Glu635ArgfsTer15	p.E635Rfs*15	ENST00000375687	NM_015338.5	630	CACCACTGCCATAGAGAGGCGGCc/c																																																																															
XPO1	7514	MSKCC	GRCh37	2	61715305	61715305	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076930-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	34	332	0	ENST00000401558.2:c.2308C>T	p.Gln770Ter	p.Q770*	ENST00000401558	NM_003400.3	770	Cag/Tag																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495663	72495663	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076930-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	235	452	0	ENST00000477973.2:c.407A>G	p.Lys137Glu	p.K137E	ENST00000477973	NM_012234.5	137	Aaa/Gaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0076936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	71	174	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610574	10610574	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	115	400	0	ENST00000171111.5:c.136C>T	p.Gln46Ter	p.Q46*	ENST00000171111	NM_203500.1	46	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1207065	1207065	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	102	373	0	ENST00000326873.7:c.157del	p.Asp53ThrfsTer11	p.D53Tfs*11	ENST00000326873	NM_000455.4	51	atG/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0076938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	49	467	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs794727798		P-0076938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	70	273	0	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982031	93982031	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	21	257	0	ENST00000369303.4:c.1434C>G	p.Ile478Met	p.I478M	ENST00000369303	NM_004440.3	478	atC/atG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	28	208	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0076939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	99	223	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ATM	472	MSKCC	GRCh37	11	108235935	108235935	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs770641163		P-0076939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	94	361	0	ENST00000278616.4:c.8977C>T	p.Arg2993Ter	p.R2993*	ENST00000278616	NM_000051.3	2993	Cga/Tga																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860074	57860075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs774148738		P-0076939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	227	314	0	ENST00000228682.2:c.821dup	p.Cys275LeufsTer32	p.C275Lfs*32	ENST00000228682	NM_005269.2	272	tgg/tGgg																																																																															
ATM	472	MSKCC	GRCh37	11	108170440	108170440	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0076939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	101	191	0	ENST00000278616.4:c.5006-1G>C		p.X1669_splice	ENST00000278616	NM_000051.3	1669																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	87	148	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576204	88576204	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761822626		P-0076939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	255	271	0	ENST00000360948.2:c.1469C>T	p.Thr490Met	p.T490M	ENST00000360948	NM_001012338.2	490	aCg/aTg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056074	26056074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	92	306	0	ENST00000343677.2:c.583C>A	p.Pro195Thr	p.P195T	ENST00000343677	NM_005319.3	195	Ccc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112173998	112173999	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	T			P-0076939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	132	306	0	ENST00000257430.4:c.2707_2708delinsT	p.Asp903SerfsTer13	p.D903Sfs*13	ENST00000257430	NM_000038.5	903	GAc/Tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0076942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	364	238	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593442	48593442	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs377767357		P-0076942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	132	236	0	ENST00000342988.3:c.1193G>A	p.Trp398Ter	p.W398*	ENST00000342988	NM_005359.5	398	tGg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0076943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	232	514	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
ROS1	6098	MSKCC	GRCh37	6	117683876	117683876	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs781304519		P-0076943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	87	364	0	ENST00000368508.3:c.3271C>G	p.Gln1091Glu	p.Q1091E	ENST00000368508	NM_002944.2	1091	Caa/Gaa																																																																															
AGO2	27161	MSKCC	GRCh37	8	141566279	141566279	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0076943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			847	96	419	0	ENST00000220592.5:c.1133A>C	p.Glu378Ala	p.E378A	ENST00000220592	NM_012154.3	378	gAg/gCg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218665	36218665	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs573580601		P-0076943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	198	540	0	ENST00000222270.7:c.4369G>C	p.Glu1457Gln	p.E1457Q	ENST00000222270	NM_014727.1	1457	Gag/Cag																																																																															
ATRX	546	MSKCC	GRCh37	X	76889145	76889145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	200	162	2	ENST00000373344.5:c.4865C>A	p.Ala1622Glu	p.A1622E	ENST00000373344	NM_000489.3	1622	gCg/gAg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31374413	31374413	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs756280552		P-0076943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	212	480	0	ENST00000328111.2:c.412G>T	p.Val138Leu	p.V138L	ENST00000328111	NM_006892.3	138	Gtg/Ttg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988281	36988281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1412022525		P-0076943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	53	382	0	ENST00000354822.5:c.372G>A	p.Met124Ile	p.M124I	ENST00000354822	NM_001079668.2	124	atG/atA																																																																															
ATR	545	MSKCC	GRCh37	3	142286929	142286929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	159	236	0	ENST00000350721.4:c.127C>G	p.Arg43Gly	p.R43G	ENST00000350721	NM_001184.3	43	Cgg/Ggg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627758	37627768	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCTCTTCCA	CAGCTCTTCCA	-			P-0076943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	110	413	0	ENST00000447079.4:c.1677_1687del	p.Leu560ThrfsTer11	p.L560Tfs*11	ENST00000447079	NM_015083.1	558	cCAGCTCTTCCA/c																																																																															
BRCA2	675	MSKCC	GRCh37	13	32893279	32893279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	221	305	0	ENST00000380152.3:c.133G>A	p.Glu45Lys	p.E45K	ENST00000380152		45	Gaa/Aaa																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630525	67630525	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1342811693		P-0076943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	194	323	0	ENST00000272342.5:c.711G>A	p.Met237Ile	p.M237I	ENST00000272342	NM_019002.3	237	atG/atA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873406	151873406	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1209588732		P-0076943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			725	97	411	0	ENST00000262189.6:c.9132G>T	p.Arg3044Ser	p.R3044S	ENST00000262189	NM_170606.2	3044	agG/agT																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59821818	59821818	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	83	280	0	ENST00000259008.2:c.2232C>G	p.Asp744Glu	p.D744E	ENST00000259008	NM_032043.2	744	gaC/gaG																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739470	145739470	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	186	413	0	ENST00000428558.2:c.1900G>C	p.Val634Leu	p.V634L	ENST00000428558	NM_004260.3	634	Gtg/Ctg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257379	19257379	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	187	480	0	ENST00000162023.5:c.754C>G	p.Pro252Ala	p.P252A	ENST00000162023		252	Ccc/Gcc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856128	111856128	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	86	435	0	ENST00000341259.2:c.179C>A	p.Ala60Asp	p.A60D	ENST00000341259	NM_005475.2	60	gCc/gAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306730	41306730	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	96	273	0	ENST00000373198.4:c.929A>G	p.Asn310Ser	p.N310S	ENST00000373198	NM_133170.3	310	aAt/aGt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31410944	31410944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			744	93	417	0	ENST00000344624.3:c.3576G>C	p.Glu1192Asp	p.E1192D	ENST00000344624		1192	gaG/gaC																																																																															
TET2	54790	MSKCC	GRCh37	4	106157539	106157539	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs192553789		P-0076943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	99	397	0	ENST00000380013.4:c.2440C>A	p.Arg814Ser	p.R814S	ENST00000380013	NM_001127208.2	814	Cgt/Agt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741255	145741255	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs376045624		P-0076943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			960	261	563	0	ENST00000428558.2:c.1151G>T	p.Arg384Leu	p.R384L	ENST00000428558	NM_004260.3	384	cGg/cTg																																																																															
SETD8	387893	MSKCC	GRCh37	12	123880936	123880936	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	183	402	0	ENST00000330479.4:c.554A>C	p.Tyr185Ser	p.Y185S	ENST00000330479	NM_020382.3	185	tAc/tCc																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80646136	80646136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs746420387		P-0076956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	39	94	0	ENST00000286548.4:c.16A>G	p.Ile6Val	p.I6V	ENST00000286548	NM_002072.3	6	Atc/Gtc																																																																															
JUN	3725	MSKCC	GRCh37	1	59248664	59248665	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0076956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	259	604	0	ENST00000371222.2:c.78dup	p.Gly27TrpfsTer4	p.G27Wfs*4	ENST00000371222	NM_002228.3	26	-/T																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653780	89653781	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0076957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			73	64	129	0	ENST00000371953.3:c.80-1_80del		p.X27_splice	ENST00000371953	NM_000314.4	27																																																																																
IKZF1	10320	MSKCC	GRCh37	7	50468309	50468309	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1159541845		P-0076957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	67	436	0	ENST00000331340.3:c.1544G>A	p.Arg515His	p.R515H	ENST00000331340	NM_006060.4	515	cGc/cAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351781	89351781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			739	86	481	0	ENST00000301030.4:c.1169G>A	p.Ser390Asn	p.S390N	ENST00000301030	NM_001256183.1	390	aGt/aAt																																																																															
ALK	238	MSKCC	GRCh37	2	29456453	29456453	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	109	541	0	ENST00000389048.3:c.2465G>T	p.Gly822Val	p.G822V	ENST00000389048	NM_004304.4	822	gGt/gTt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68972972	68972972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	171	288	0	ENST00000288368.4:c.1297C>A	p.His433Asn	p.H433N	ENST00000288368	NM_024870.2	433	Cac/Aac																																																																															
CASP8	841	MSKCC	GRCh37	2	202149961	202149962	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-	rs1159036295		P-0076958-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	207	569	0	ENST00000358485.4:c.1405_1406del	p.Val469PhefsTer28	p.V469Ffs*28	ENST00000358485	NM_001080125.1	468	TGt/t																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222385	6222385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076958-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	40	363	0	ENST00000252674.7:c.857G>A	p.Arg286Gln	p.R286Q	ENST00000252674	NM_005934.3	286	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579310	7579311	+	splice_donor_variant	Splice_Site	INS	-	-	C			P-0076958-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	218	502	0	ENST00000269305.4:c.375+1dup		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
HIST1H3C	8352	MSKCC	GRCh37	6	26045706	26045706	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs769895262		P-0076958-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			963	59	566	0	ENST00000540144.1:c.68C>G	p.Thr23Ser	p.T23S	ENST00000540144	NM_003531.2	23	aCt/aGt																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793124	33793124	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076958-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	35	474	0	ENST00000498907.2:c.197C>G	p.Ala66Gly	p.A66G	ENST00000498907	NM_004364.3	66	gCc/gGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs879255270		P-0076966-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			339	64	376	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879673	151879673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076966-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			420	42	276	0	ENST00000262189.6:c.5272C>T	p.Arg1758Cys	p.R1758C	ENST00000262189	NM_170606.2	1758	Cgt/Tgt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906816	50906816	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1426325954		P-0076966-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			361	72	298	0	ENST00000440232.2:c.1204G>A	p.Asp402Asn	p.D402N	ENST00000440232	NM_002691.3	402	Gac/Aac																																																																															
CDH1	999	MSKCC	GRCh37	16	68863698	68863698	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0076966-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			235	79	243	0	ENST00000261769.5:c.2437G>T	p.Glu813Ter	p.E813*	ENST00000261769	NM_004360.3	813	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928077	178928097	+	inframe_deletion	In_Frame_Del	DEL	TAGAAGATTTGCTGAACCCTA	TAGAAGATTTGCTGAACCCTA	-			P-0076966-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			271	93	276	0	ENST00000263967.3:c.1356_1376del	p.Leu452_Ile459delinsPhe	p.L452_I459delinsF	ENST00000263967	NM_006218.2	452	tTAGAAGATTTGCTGAACCCTAtt/ttt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52438509	52438509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1035262201		P-0076966-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			421	45	323	0	ENST00000460680.1:c.1210G>A	p.Asp404Asn	p.D404N	ENST00000460680	NM_004656.3	404	Gac/Aac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115415	115115415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076966-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			270	36	297	0	ENST00000257566.3:c.911G>A	p.Arg304Gln	p.R304Q	ENST00000257566	NM_016569.3	304	cGg/cAg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187191	11187191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076966-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			340	46	299	0	ENST00000361445.4:c.6227G>A	p.Arg2076Gln	p.R2076Q	ENST00000361445	NM_004958.3	2076	cGa/cAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860506	151860506	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076966-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			476	51	408	0	ENST00000262189.6:c.10156G>C	p.Asp3386His	p.D3386H	ENST00000262189	NM_170606.2	3386	Gat/Cat																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1918600	1918600	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0076966-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	38	202	0	ENST00000382895.3:c.763C>G	p.Gln255Glu	p.Q255E	ENST00000382895	NM_133330.2	255	Cag/Gag																																																																															
AXL	558	MSKCC	GRCh37	19	41765765	41765765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076966-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			446	47	364	0	ENST00000301178.4:c.2641G>A	p.Asp881Asn	p.D881N	ENST00000301178	NM_021913.4	881	Gat/Aat																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38196097	38196097	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0076966-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			316	49	251	0	ENST00000317025.8:c.704C>G	p.Ser235Ter	p.S235*	ENST00000317025	NM_023034.1	235	tCa/tGa																																																																															
GAB1	2549	MSKCC	GRCh37	4	144360961	144360961	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076966-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			232	35	209	0	ENST00000262994.4:c.1202G>C	p.Ser401Thr	p.S401T	ENST00000262994	NM_002039.3	401	aGt/aCt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211869	36211869	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076966-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			537	46	402	0	ENST00000222270.7:c.1620C>G	p.Ile540Met	p.I540M	ENST00000222270	NM_014727.1	540	atC/atG																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871797	12871797	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1260635377		P-0076966-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			466	48	266	0	ENST00000228872.4:c.514G>A	p.Glu172Lys	p.E172K	ENST00000228872	NM_004064.3	172	Gaa/Aaa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056021	26056021	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs987043105		P-0076966-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	56	316	0	ENST00000343677.2:c.636G>C	p.Lys212Asn	p.K212N	ENST00000343677	NM_005319.3	212	aaG/aaC																																																																															
ATR	545	MSKCC	GRCh37	3	142186793	142186793	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076966-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			259	23	225	0	ENST00000350721.4:c.6670G>C	p.Glu2224Gln	p.E2224Q	ENST00000350721	NM_001184.3	2224	Gaa/Caa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0076971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	33	242	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
LMO1	4004	MSKCC	GRCh37	11	8248579	8248579	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	54	359	0	ENST00000335790.3:c.308G>T	p.Arg103Leu	p.R103L	ENST00000335790	NM_002315.2	103	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0076971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	39	203	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31435945	31435945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	34	211	0	ENST00000344624.3:c.2969G>T	p.Ser990Ile	p.S990I	ENST00000344624		990	aGt/aTt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444299	50444299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	60	376	0	ENST00000331340.3:c.229G>A	p.Glu77Lys	p.E77K	ENST00000331340	NM_006060.4	77	Gaa/Aaa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28896982	28896982	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	40	281	1	ENST00000282397.4:c.2898T>A	p.Phe966Leu	p.F966L	ENST00000282397	NM_002019.4	966	ttT/ttA																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281311	15281311	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	63	357	0	ENST00000263388.2:c.4945del	p.Ala1649ArgfsTer56	p.A1649Rfs*56	ENST00000263388	NM_000435.2	1649	Gcg/cg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528578	89528578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	38	237	0	ENST00000336596.2:c.2878G>T	p.Gly960Trp	p.G960W	ENST00000336596	NM_005233.5	960	Ggg/Tgg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564113	139564113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1304820249		P-0076973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	93	371	0	ENST00000308874.7:c.253C>T	p.Arg85Cys	p.R85C	ENST00000308874		85	Cgc/Tgc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307583	118307583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	123	282	0	ENST00000534358.1:c.356C>T	p.Ser119Leu	p.S119L	ENST00000534358	NM_005933.3	119	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0076973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	121	214	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NF1	4763	MSKCC	GRCh37	17	29533295	29533295	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	257	356	0	ENST00000358273.4:c.1298A>T	p.Tyr433Phe	p.Y433F	ENST00000358273	NM_001042492.2	433	tAt/tTt																																																																															
REL	5966	MSKCC	GRCh37	2	61149623	61149623	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	180	283	0	ENST00000295025.8:c.1813A>T	p.Asn605Tyr	p.N605Y	ENST00000295025	NM_002908.2	605	Aat/Tat																																																																															
APLNR	187	MSKCC	GRCh37	11	57004273	57004273	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	T			P-0076973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	189	400	0	ENST00000257254.3:c.206C>A	p.Ala69Asp	p.A69D	ENST00000257254		69	gCt/gAt																																																																															
MCL1	4170	MSKCC	GRCh37	1	150550913	150550913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1201	144	400	0	ENST00000369026.2:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000369026	NM_021960.4	248	cGa/cAa																																																																															
ATM	472	MSKCC	GRCh37	11	108153479	108153479	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0076973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	127	230	0	ENST00000278616.4:c.3619G>T	p.Glu1207Ter	p.E1207*	ENST00000278616	NM_000051.3	1207	Gaa/Taa																																																																															
SMO	6608	MSKCC	GRCh37	7	128852143	128852143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	301	444	0	ENST00000249373.3:c.2215C>A	p.Pro739Thr	p.P739T	ENST00000249373	NM_005631.4	739	Cca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587778720		P-0076974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	45	428	0	ENST00000269305.4:c.638G>C	p.Arg213Pro	p.R213P	ENST00000269305	NM_001126112.2	213	cGa/cCa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039418	47039421	+	frameshift_variant	Frame_Shift_Del	DEL	CATC	CATC	-			P-0076974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	22	207	0	ENST00000329236.7:c.812_815del	p.Ile271SerfsTer135	p.I271Sfs*135	ENST00000329236	NM_001204466.1	270	ttCATC/tt																																																																															
NF1	4763	MSKCC	GRCh37	17	29654691	29654691	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	47	392	0	ENST00000358273.4:c.5443C>T	p.Gln1815Ter	p.Q1815*	ENST00000358273	NM_001042492.2	1815	Cag/Tag																																																																															
SDHA	6389	MSKCC	GRCh37	5	224568	224568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	73	267	0	ENST00000264932.6:c.244G>A	p.Glu82Lys	p.E82K	ENST00000264932	NM_004168.2	82	Gag/Aag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	472148	472148	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	31	338	0	ENST00000399788.2:c.653C>G	p.Thr218Arg	p.T218R	ENST00000399788	NM_001042603.1	218	aCa/aGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076975-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	51	223	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0076975-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	59	270	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117722	115117722	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076975-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	30	326	0	ENST00000257566.3:c.713C>A	p.Thr238Asn	p.T238N	ENST00000257566	NM_016569.3	238	aCt/aAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	301	427	0	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																															
FYN	2534	MSKCC	GRCh37	6	112041025	112041025	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779126684		P-0076990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	42	323	0	ENST00000368678.4:c.230G>A	p.Arg77His	p.R77H	ENST00000368678		77	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604695	48604695	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	21	409	4	ENST00000342988.3:c.1517T>A	p.Val506Glu	p.V506E	ENST00000342988	NM_005359.5	506	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0076993-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	187	533	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0076993-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	214	413	0	ENST00000257430.4:c.4192_4193del	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554161	63554161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076993-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			712	133	522	0	ENST00000307078.5:c.578C>A	p.Ser193Tyr	p.S193Y	ENST00000307078	NM_004655.3	193	tCt/tAt																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111907687	111907699	+	frameshift_variant	Frame_Shift_Del	DEL	GTATTGGAGACGA	GTATTGGAGACGA	-			P-0076993-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	132	355	0	ENST00000393256.3:c.463_475del	p.Ile155LeufsTer11	p.I155Lfs*11	ENST00000393256	NM_006538.4	154	cGTATTGGAGACGAg/cg																																																																															
TP63	8626	MSKCC	GRCh37	3	189612268	189612268	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs972760958		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	41	321	0	ENST00000264731.3:c.2020C>T	p.Arg674Cys	p.R674C	ENST00000264731	NM_003722.4	674	Cgc/Tgc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2213944	2213944	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368909792		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			742	43	377	2	ENST00000326181.6:c.23G>A	p.Arg8His	p.R8H	ENST00000326181	NM_032271.2	8	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			760	168	502	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177584	56177584	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368201444		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	78	360	0	ENST00000399503.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000399503	NM_005921.1	853	Cgt/Tgt																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108652	8108652	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777705809		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	41	376	0	ENST00000585124.1:c.743G>A	p.Arg248His	p.R248H	ENST00000585124	NM_004217.3	248	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440713	56440713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779337229		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	72	434	0	ENST00000407977.2:c.505G>A	p.Ala169Thr	p.A169T	ENST00000407977		169	Gct/Act																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			801	93	471	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123310820	123310820	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747502397		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	40	278	0	ENST00000358487.5:c.608G>A	p.Arg203His	p.R203H	ENST00000358487	NM_000141.4	203	cGc/cAc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	133	390	5	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39623699	39623700	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1234146599		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	14	210	0	ENST00000262039.4:c.2112dup	p.Arg705Ter	p.R705*	ENST00000262039	NM_002647.2	702	-/T																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306959	65306959	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1358494508		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	30	386	0	ENST00000342505.4:c.2618G>A	p.Arg873His	p.R873H	ENST00000342505	NM_002227.2	873	cGc/cAc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	68	424	1	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	50	380	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16264445	16264445	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1355879966		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	37	373	0	ENST00000375759.3:c.10648G>A	p.Ala3550Thr	p.A3550T	ENST00000375759	NM_015001.2	3550	Gcc/Acc																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	38	351	1	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988309	36988309	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1351137318		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	24	362	0	ENST00000354822.5:c.344del	p.Gly115AlafsTer10	p.G115Afs*10	ENST00000354822	NM_001079668.2	115	gGc/gc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	67	362	0	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																																																															
TET1	80312	MSKCC	GRCh37	10	70332152	70332153	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1196853334		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	22	317	1	ENST00000373644.4:c.65dup	p.Lys23GlufsTer37	p.K23Efs*37	ENST00000373644	NM_030625.2	19	-/A																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99193602	99193602	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1271977013		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	38	376	0	ENST00000074304.5:c.2797C>T	p.Arg933Cys	p.R933C	ENST00000074304	NM_001134224.1	933	Cgc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991586	72991586	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768340392		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	36	391	2	ENST00000268489.5:c.2459G>A	p.Arg820His	p.R820H	ENST00000268489	NM_006885.3	820	cGc/cAc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911141	29911141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	30	282	0	ENST00000376809.5:c.440A>G	p.Tyr147Cys	p.Y147C	ENST00000376809	NM_002116.7	147	tAc/tGc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	12	319	1	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814797	139814797	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144427288		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			748	79	446	0	ENST00000247668.2:c.790G>A	p.Ala264Thr	p.A264T	ENST00000247668	NM_021138.3	264	Gcg/Acg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396643	30396643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	24	203	0	ENST00000331968.5:c.76G>A	p.Ala26Thr	p.A26T	ENST00000331968	NM_002742.2	26	Gca/Aca																																																																															
MLH1	4292	MSKCC	GRCh37	3	37050315	37050315	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	18	231	0	ENST00000231790.2:c.469del	p.Tyr157ThrfsTer3	p.Y157Tfs*3	ENST00000231790	NM_000249.3	155	cTt/ct																																																																															
TSHR	7253	MSKCC	GRCh37	14	81558901	81558901	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772600260		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	15	307	1	ENST00000298171.2:c.494C>T	p.Thr165Met	p.T165M	ENST00000298171	NM_000369.2	165	aCg/aTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226063	53226063	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782148639		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	39	205	1	ENST00000375401.3:c.2786G>A	p.Arg929Gln	p.R929Q	ENST00000375401	NM_004187.3	929	cGa/cAa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288789	15288789	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	47	243	0	ENST00000263388.2:c.3950del	p.Pro1317GlnfsTer103	p.P1317Qfs*103	ENST00000263388	NM_000435.2	1317	cCa/ca																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230604	46230604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	22	329	0	ENST00000334344.6:c.853C>T	p.Arg285Trp	p.R285W	ENST00000334344	NM_152641.2	285	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211898	36211899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775294431		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			753	58	406	3	ENST00000222270.7:c.1656dup	p.Lys553GlnfsTer46	p.K553Qfs*46	ENST00000222270	NM_014727.1	550	gac/gaCc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273104	18273105	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			824	50	444	0	ENST00000222254.8:c.1000dup	p.Asp334GlyfsTer26	p.D334Gfs*26	ENST00000222254	NM_005027.3	332	tgg/tGgg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46587791	46587791	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	34	269	1	ENST00000263734.3:c.475del	p.Ser159AlafsTer12	p.S159Afs*12	ENST00000263734	NM_001430.4	157	Aaa/aa																																																																															
MED12	9968	MSKCC	GRCh37	X	70342373	70342373	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368913305		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	39	216	0	ENST00000374080.3:c.1264C>T	p.Arg422Trp	p.R422W	ENST00000374080		422	Cgg/Tgg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883240	37883240	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749539903		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	58	306	0	ENST00000269571.5:c.3143G>A	p.Arg1048His	p.R1048H	ENST00000269571		1048	cGc/cAc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163318766	163318766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	22	280	0	ENST00000271452.3:c.1156G>A	p.Ala386Thr	p.A386T	ENST00000271452	NM_145697.2	386	Gct/Act																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286254	66286255	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	12	284	0	ENST00000273854.3:c.1431dup	p.Gly478ArgfsTer26	p.G478Rfs*26	ENST00000273854	NM_004439.5	477	-/A																																																																															
MED12	9968	MSKCC	GRCh37	X	70349688	70349688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	37	240	0	ENST00000374080.3:c.3850C>T	p.Arg1284Cys	p.R1284C	ENST00000374080		1284	Cgc/Tgc																																																																															
AKT1	207	MSKCC	GRCh37	14	105236728	105236728	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770370100		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	46	281	0	ENST00000349310.3:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000349310	NM_001014432.1	465	Cgc/Tgc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137323779	137323779	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368400425		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	74	379	0	ENST00000481739.1:c.1072C>T	p.Arg358Trp	p.R358W	ENST00000481739	NM_002957.4	358	Cgg/Tgg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94128980	94128980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	47	310	0	ENST00000369303.4:c.80C>T	p.Ala27Val	p.A27V	ENST00000369303	NM_004440.3	27	gCg/gTg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25468913	25468913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	34	287	0	ENST00000264709.3:c.1450C>T	p.Arg484Trp	p.R484W	ENST00000264709	NM_175629.2	484	Cgg/Tgg																																																																															
MYC	4609	MSKCC	GRCh37	8	128752816	128752816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			732	58	348	2	ENST00000377970.2:c.977C>T	p.Ala326Val	p.A326V	ENST00000377970	NM_002467.4	326	gCg/gTg																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006078	22006078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	40	410	0	ENST00000276925.6:c.325C>T	p.Arg109Cys	p.R109C	ENST00000276925	NM_004936.3	109	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5240269	5240269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758563821		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	38	321	0	ENST00000357368.4:c.1645C>T	p.Arg549Trp	p.R549W	ENST00000357368	NM_002850.3	549	Cgg/Tgg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729375	41729375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	60	368	0	ENST00000242208.4:c.1154C>T	p.Ala385Val	p.A385V	ENST00000242208	NM_002192.2	385	gCc/gTc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665538	138665538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	20	223	0	ENST00000330315.3:c.27G>T	p.Glu9Asp	p.E9D	ENST00000330315	NM_023067.3	9	gaG/gaT																																																																															
ATR	545	MSKCC	GRCh37	3	142168414	142168414	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	24	286	0	ENST00000350721.4:c.7792C>T	p.Arg2598Ter	p.R2598*	ENST00000350721	NM_001184.3	2598	Cga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110043	115110043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	37	321	0	ENST00000257566.3:c.1835C>T	p.Ala612Val	p.A612V	ENST00000257566	NM_016569.3	612	gCg/gTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67575490	67575490	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148059720		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	37	311	0	ENST00000274335.5:c.563G>A	p.Arg188His	p.R188H	ENST00000274335		188	cGc/cAc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714555	52714555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			738	43	408	0	ENST00000322088.6:c.313C>T	p.Arg105Trp	p.R105W	ENST00000322088	NM_014225.5	105	Cgg/Tgg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149498321	149498321	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	40	372	0	ENST00000261799.4:c.2893G>T	p.Gly965Cys	p.G965C	ENST00000261799	NM_002609.3	965	Ggt/Tgt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1961391	1961391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			702	71	342	0	ENST00000382895.3:c.3179G>A	p.Arg1060His	p.R1060H	ENST00000382895	NM_133330.2	1060	cGc/cAc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2181578	2181578	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	21	226	0	ENST00000349721.2:c.4261C>T	p.Arg1421Ter	p.R1421*	ENST00000349721	NM_003070.3	1421	Cga/Tga																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446611	29446611	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	35	335	0	ENST00000544604.2:c.2442del	p.Pro815ArgfsTer11	p.P815Rfs*11	ENST00000544604	NM_001206998.1	814	ccA/cc																																																																															
MGA	23269	MSKCC	GRCh37	15	42058856	42058856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	38	365	0	ENST00000219905.7:c.8576C>T	p.Ala2859Val	p.A2859V	ENST00000219905	NM_001164273.1	2859	gCt/gTt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258679	16258679	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749329894		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			876	101	496	0	ENST00000375759.3:c.5944C>T	p.Arg1982Trp	p.R1982W	ENST00000375759	NM_015001.2	1982	Cgg/Tgg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661201	227661201	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200141729		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	53	425	0	ENST00000305123.5:c.2254G>A	p.Gly752Ser	p.G752S	ENST00000305123	NM_005544.2	752	Ggc/Agc																																																																															
POLE	5426	MSKCC	GRCh37	12	133249835	133249835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	55	322	0	ENST00000320574.5:c.1388C>T	p.Ala463Val	p.A463V	ENST00000320574	NM_006231.2	463	gCt/gTt																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29440867	29440867	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1188411932		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	73	288	0	ENST00000544604.2:c.733C>T	p.Arg245Ter	p.R245*	ENST00000544604	NM_001206998.1	245	Cga/Tga																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143094958	143094958	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771207398		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	14	238	0	ENST00000262992.4:c.1186G>A	p.Gly396Arg	p.G396R	ENST00000262992	NM_001101669.1	396	Gga/Aga																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015166	37015166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	46	287	0	ENST00000358127.4:c.238C>T	p.Pro80Ser	p.P80S	ENST00000358127	NM_001280556.1	80	Cct/Tct																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40359615	40359615	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	41	292	0	ENST00000293328.3:c.2038T>C	p.Ser680Pro	p.S680P	ENST00000293328	NM_012448.3	680	Tcc/Ccc																																																																															
TEK	7010	MSKCC	GRCh37	9	27202982	27202982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	29	382	0	ENST00000380036.4:c.2074G>A	p.Ala692Thr	p.A692T	ENST00000380036	NM_000459.3	692	Gcc/Acc																																																																															
GREM1	26585	MSKCC	GRCh37	15	33022976	33022976	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	49	350	0	ENST00000300177.4:c.85T>C	p.Ser29Pro	p.S29P	ENST00000300177	NM_001191322.1	29	Tcc/Ccc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771881	135771881	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	36	447	0	ENST00000298552.3:c.3236del	p.Gly1079AlafsTer12	p.G1079Afs*12	ENST00000298552	NM_001162426.1	1079	gGc/gc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281178	15281178	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775966002		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	44	422	0	ENST00000263388.2:c.5078G>A	p.Arg1693Gln	p.R1693Q	ENST00000263388	NM_000435.2	1693	cGg/cAg																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2090164	2090164	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749047684		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	64	404	0	ENST00000219066.1:c.785C>T	p.Thr262Ile	p.T262I	ENST00000219066	NM_002528.5	262	aCc/aTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410370	63410370	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs945869656		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	41	234	0	ENST00000330258.3:c.2797G>A	p.Glu933Lys	p.E933K	ENST00000330258	NM_152424.3	933	Gaa/Aaa																																																																															
SDHB	6390	MSKCC	GRCh37	1	17350481	17350481	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1252727177		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	28	282	0	ENST00000375499.3:c.629C>T	p.Ala210Val	p.A210V	ENST00000375499	NM_003000.2	210	gCa/gTa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948776	71948776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			733	92	462	0	ENST00000298229.2:c.3488G>A	p.Gly1163Asp	p.G1163D	ENST00000298229	NM_001567.3	1163	gGc/gAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42042533	42042533	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	21	358	0	ENST00000219905.7:c.6728C>A	p.Ser2243Tyr	p.S2243Y	ENST00000219905	NM_001164273.1	2243	tCt/tAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224760	36224760	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			722	71	447	0	ENST00000222270.7:c.7146G>A	p.Trp2382Ter	p.W2382*	ENST00000222270	NM_014727.1	2382	tgG/tgA																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602863	10602863	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			778	47	414	0	ENST00000171111.5:c.715del	p.Val239CysfsTer38	p.V239Cfs*38	ENST00000171111	NM_203500.1	239	Gtg/tg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64574511	64574511	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1397110438		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	70	388	0	ENST00000337652.1:c.899G>A	p.Arg300Gln	p.R300Q	ENST00000337652	NM_130803.2	300	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175305	112175305	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	30	384	0	ENST00000257430.4:c.4014G>T	p.Gln1338His	p.Q1338H	ENST00000257430	NM_000038.5	1338	caG/caT																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137527312	137527312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	14	293	0	ENST00000367739.4:c.334G>A	p.Ala112Thr	p.A112T	ENST00000367739	NM_000416.2	112	Gcc/Acc																																																																															
MED12	9968	MSKCC	GRCh37	X	70346966	70346966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	27	171	0	ENST00000374080.3:c.2833G>A	p.Ala945Thr	p.A945T	ENST00000374080		945	Gca/Aca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244235	5244235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	44	392	0	ENST00000357368.4:c.1247C>T	p.Ser416Phe	p.S416F	ENST00000357368	NM_002850.3	416	tCc/tTc																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805364	46805364	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	42	385	0	ENST00000290295.7:c.592G>T	p.Ala198Ser	p.A198S	ENST00000290295	NM_006361.5	198	Gca/Tca																																																																															
ATM	472	MSKCC	GRCh37	11	108192102	108192102	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	49	294	0	ENST00000278616.4:c.6527T>C	p.Leu2176Ser	p.L2176S	ENST00000278616	NM_000051.3	2176	tTg/tCg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526312	31526312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			868	64	411	0	ENST00000344624.3:c.728G>T	p.Arg243Met	p.R243M	ENST00000344624		243	aGg/aTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528927	157528927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	68	394	0	ENST00000346085.5:c.6652C>T	p.His2218Tyr	p.H2218Y	ENST00000346085	NM_020732.3	2218	Cac/Tac																																																																															
NUP93	9688	MSKCC	GRCh37	16	56864490	56864490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	41	336	0	ENST00000308159.5:c.978G>A	p.Met326Ile	p.M326I	ENST00000308159	NM_014669.4	326	atG/atA																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739788	41739788	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	35	378	0	ENST00000242208.4:c.185T>A	p.Ile62Asn	p.I62N	ENST00000242208	NM_002192.2	62	aTt/aAt																																																																															
ATM	472	MSKCC	GRCh37	11	108160510	108160510	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	21	281	0	ENST00000278616.4:c.4418T>A	p.Ile1473Asn	p.I1473N	ENST00000278616	NM_000051.3	1473	aTt/aAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47155430	47155430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	22	304	0	ENST00000409792.3:c.4651G>T	p.Asp1551Tyr	p.D1551Y	ENST00000409792	NM_014159.6	1551	Gat/Tat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151856125	151856125	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	27	347	0	ENST00000262189.6:c.11493del	p.Phe3831LeufsTer58	p.F3831Lfs*58	ENST00000262189	NM_170606.2	3831	ttT/tt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912814	50912814	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773665739		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	34	346	0	ENST00000440232.2:c.2045G>A	p.Arg682Gln	p.R682Q	ENST00000440232	NM_002691.3	682	cGg/cAg																																																																															
SMO	6608	MSKCC	GRCh37	7	128829297	128829297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	31	352	0	ENST00000249373.3:c.305C>T	p.Ala102Val	p.A102V	ENST00000249373	NM_005631.4	102	gCg/gTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226341	2226341	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs549010160		P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	52	427	0	ENST00000398665.3:c.3821C>T	p.Thr1274Met	p.T1274M	ENST00000398665	NM_032482.2	1274	aCg/aTg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59886095	59886095	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	20	289	0	ENST00000259008.2:c.651C>A	p.Cys217Ter	p.C217*	ENST00000259008	NM_032043.2	217	tgC/tgA																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552763	106552763	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	55	395	0	ENST00000369096.4:c.728T>C	p.Val243Ala	p.V243A	ENST00000369096	NM_001198.3	243	gTc/gCc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2073296	2073296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	42	362	0	ENST00000349721.2:c.1831G>T	p.Ala611Ser	p.A611S	ENST00000349721	NM_003070.3	611	Gca/Tca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419986	41419986	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372989163		P-0076996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	87	452	0	ENST00000373198.4:c.335G>A	p.Arg112His	p.R112H	ENST00000373198	NM_133170.3	112	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0076996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	74	199	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0076996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	83	283	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0076996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	67	453	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096099	178096099	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	74	456	0	ENST00000397062.3:c.1232A>G	p.Gln411Arg	p.Q411R	ENST00000397062	NM_006164.4	411	cAg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0076996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	81	214	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739857	41739857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	78	423	0	ENST00000242208.4:c.116C>T	p.Ala39Val	p.A39V	ENST00000242208	NM_002192.2	39	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTATTACA			P-0076996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	40	460	0	ENST00000257430.4:c.4464_4471dup	p.Phe1491TyrfsTer19	p.F1491Yfs*19	ENST00000257430	NM_000038.5	1487	-/TTATTACA																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554713	63554714	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0076996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	104	419	0	ENST00000307078.5:c.25dup	p.Cys9LeufsTer11	p.C9Lfs*11	ENST00000307078	NM_004655.3	9	tgc/tTgc																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64286792	64286792	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1287161254		P-0076996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	72	243	0	ENST00000370651.3:c.7C>T	p.Arg3Ter	p.R3*	ENST00000370651	NM_003463.4	3	Cga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467746	66467746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	48	355	0	ENST00000273854.3:c.523G>A	p.Asp175Asn	p.D175N	ENST00000273854	NM_004439.5	175	Gat/Aat																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067310	37067310	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	46	343	0	ENST00000231790.2:c.1221G>T	p.Gln407His	p.Q407H	ENST00000231790	NM_000249.3	407	caG/caT																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3831228	3831228	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0076996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	42	252	0	ENST00000262367.5:c.1653del	p.Pro552ArgfsTer10	p.P552Rfs*10	ENST00000262367	NM_004380.2	551	ctT/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782664		P-0076998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	668	353	0	ENST00000269305.4:c.711G>C	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	445	383	0	ENST00000342988.3:c.1572G>A	p.Trp524Ter	p.W524*	ENST00000342988	NM_005359.5	524	tgG/tgA																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938582	44938582	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			52	92	177	0	ENST00000377967.4:c.3130C>T	p.Gln1044Ter	p.Q1044*	ENST00000377967	NM_021140.2	1044	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	245	255	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220070	36220070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	47	437	0	ENST00000222270.7:c.4790G>A	p.Arg1597Gln	p.R1597Q	ENST00000222270	NM_014727.1	1597	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0077002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	25	185	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70357212	70357212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	52	336	0	ENST00000374080.3:c.5727G>T	p.Gln1909His	p.Q1909H	ENST00000374080		1909	caG/caT																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467822	50467822	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766490909		P-0077002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	50	304	0	ENST00000331340.3:c.1057C>T	p.Pro353Ser	p.P353S	ENST00000331340	NM_006060.4	353	Ccg/Tcg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023178	27023198	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCGGAGCCGGACCTGAAGA	GCGCGGAGCCGGACCTGAAGA	ACGG			P-0077002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	33	273	1	ENST00000324856.7:c.284_304delinsACGG	p.Gly95AspfsTer10	p.G95Dfs*10	ENST00000324856	NM_006015.4	95	gGCGCGGAGCCGGACCTGAAGAac/gACGGac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0077021-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	113	343	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974730	21974730	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077021-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	118	486	0	ENST00000304494.5:c.97G>T	p.Glu33Ter	p.E33*	ENST00000304494	NM_000077.4	33	Gag/Tag																																																																															
ERF	2077	MSKCC	GRCh37	19	42752817	42752817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077021-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	81	543	0	ENST00000222329.4:c.1447C>T	p.Arg483Cys	p.R483C	ENST00000222329	NM_006494.2	483	Cgc/Tgc																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66519006	66519006	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077021-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	178	407	0	ENST00000358598.2:c.287G>T	p.Arg96Leu	p.R96L	ENST00000358598	NM_212471.2	96	cGa/cTa																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0077022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	93	347	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0077022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	133	299	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123504102	123504102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	84	281	0	ENST00000371139.4:c.278G>A	p.Gly93Asp	p.G93D	ENST00000371139	NM_001114937.2	93	gGc/gAc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643300	38643300	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750832911		P-0077022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	51	327	0	ENST00000299084.4:c.770G>A	p.Arg257His	p.R257H	ENST00000299084	NM_152594.2	257	cGc/cAc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62323128	62323128	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	C			P-0077022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	35	338	0	ENST00000482936.1:c.2590G>C	p.Glu864Gln	p.E864Q	ENST00000482936		864	Gag/Cag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41228537	41228538	+	stop_gained	Nonsense_Mutation	DNP	AG	AG	TT			P-0077022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	53	287	0	ENST00000357654.3:c.4451_4452delinsAA	p.Ser1484Ter	p.S1484*	ENST00000357654	NM_007294.3	1484	tCT/tAA																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285676	87285676	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs981883098		P-0077022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	65	407	0	ENST00000277120.3:c.13A>G	p.Ile5Val	p.I5V	ENST00000277120		5	Ata/Gta																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205107	38205107	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	50	310	0	ENST00000317025.8:c.583G>C	p.Glu195Gln	p.E195Q	ENST00000317025	NM_023034.1	195	Gaa/Caa																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150923553	150923553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	56	414	0	ENST00000271640.5:c.2200G>A	p.Gly734Arg	p.G734R	ENST00000271640	NM_001145415.1	734	Ggg/Agg																																																																															
CDH1	999	MSKCC	GRCh37	16	68845586	68845586	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0077022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	36	312	0	ENST00000261769.5:c.833-1G>T		p.X278_splice	ENST00000261769	NM_004360.3	278																																																																																
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0077023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	118	401	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077023-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	149	574	0	ENST00000269305.4:c.538G>T	p.Glu180Ter	p.E180*	ENST00000269305	NM_001126112.2	180	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs1057517840		P-0077025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	184	394	0	ENST00000269305.4:c.626_627del	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118924	70118926	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0077025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	214	471	0	ENST00000245479.2:c.499_501del	p.Lys167del	p.K167del	ENST00000245479	NM_000346.3	166	AAG/-																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965472	68965472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200682883		P-0077025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	109	336	0	ENST00000288368.4:c.1084C>T	p.Arg362Trp	p.R362W	ENST00000288368	NM_024870.2	362	Cgg/Tgg																																																																															
SMO	6608	MSKCC	GRCh37	7	128848674	128848674	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1006687669		P-0077025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	123	304	0	ENST00000249373.3:c.1339G>A	p.Glu447Lys	p.E447K	ENST00000249373	NM_005631.4	447	Gag/Aag																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983086	201983086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	118	361	0	ENST00000359651.3:c.935C>T	p.Ala312Val	p.A312V	ENST00000359651		312	gCc/gTc																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690708	33690709	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs746280504		P-0077025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	110	326	0	ENST00000308377.4:c.118_119del	p.Asp40ProfsTer28	p.D40Pfs*28	ENST00000308377	NM_152270.3	40	GAc/c																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47606995	47606998	+	frameshift_variant	Frame_Shift_Del	DEL	ATTT	ATTT	-			P-0077025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	131	292	0	ENST00000263735.4:c.748_751del	p.Tyr250MetfsTer14	p.Y250Mfs*14	ENST00000263735	NM_002354.2	249	ATTTat/at																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0077027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	117	416	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0077027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	72	334	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	49	191	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48586234	48586234	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0077027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	35	191	0	ENST00000342988.3:c.905-2A>G		p.X302_splice	ENST00000342988	NM_005359.5	302																																																																																
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1131691025		P-0077030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	56	408	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	24	237	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578277	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0077033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	223	486	0	ENST00000269305.4:c.572_574del	p.Pro191del	p.P191del	ENST00000269305	NM_001126112.2	191	cCTCag/cag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0077033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	182	430	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860143	151860143	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs747835958		P-0077033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	108	417	0	ENST00000262189.6:c.10519C>T	p.Arg3507Ter	p.R3507*	ENST00000262189	NM_170606.2	3507	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0077033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	122	243	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505472	25505472	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775033041		P-0077033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	151	310	0	ENST00000264709.3:c.286C>T	p.Arg96Trp	p.R96W	ENST00000264709	NM_175629.2	96	Cgg/Tgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878334	151878335	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0077033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	113	393	0	ENST00000262189.6:c.6610dup	p.Ala2204GlyfsTer32	p.A2204Gfs*32	ENST00000262189	NM_170606.2	2204	gct/gGct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0077038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	84	173	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0077038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	99	122	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604724	48604725	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0077038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	95	146	0	ENST00000342988.3:c.1549_1550dup	p.Ser517ArgfsTer21	p.S517Rfs*21	ENST00000342988	NM_005359.5	516	cag/cAGag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578509	7578509	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519978		P-0077040-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			643	45	485	0	ENST00000269305.4:c.421T>G	p.Cys141Gly	p.C141G	ENST00000269305	NM_001126112.2	141	Tgc/Ggc																																																																															
MET	4233	MSKCC	GRCh37	7	116412035	116412046	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCCAGAAGGTA	TTCCAGAAGGTA	-			P-0077040-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			651	74	471	0	ENST00000397752.3:c.3021_3028+4del		p.X1007_splice	ENST00000397752	NM_000245.2	1007																																																																																
MITF	4286	MSKCC	GRCh37	3	69990386	69990386	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0077040-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			433	27	272	0	ENST00000352241.4:c.667-1G>T		p.X223_splice	ENST00000352241	NM_198159.2	223																																																																																
POT1	25913	MSKCC	GRCh37	7	124503649	124503649	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077040-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			497	50	393	0	ENST00000357628.3:c.301T>G	p.Phe101Val	p.F101V	ENST00000357628	NM_015450.2	101	Ttt/Gtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0077042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	109	605	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0077042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	22	280	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0077042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	56	424	0	ENST00000257430.4:c.4192_4193del	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21351080	21351080	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	37	562	0	ENST00000215739.8:c.2315A>T	p.Asn772Ile	p.N772I	ENST00000215739	NM_006767.3	772	aAc/aTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	45	437	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726266	46726266	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149141765		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	123	470	0	ENST00000371975.4:c.460C>T	p.Arg154Trp	p.R154W	ENST00000371975	NM_003579.3	154	Cgg/Tgg																																																																															
JUN	3725	MSKCC	GRCh37	1	59248126	59248126	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs763958620		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	110	492	2	ENST00000371222.2:c.617A>C	p.Gln206Pro	p.Q206P	ENST00000371222	NM_002228.3	206	cAg/cCg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9778839	9778839	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	128	432	0	ENST00000377346.4:c.1108del	p.Val370CysfsTer28	p.V370Cfs*28	ENST00000377346	NM_005026.3	370	Gtg/tg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	98	351	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685271	89685271	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	88	188	0	ENST00000371953.3:c.170del	p.Leu57TrpfsTer42	p.L57Wfs*42	ENST00000371953	NM_000314.4	56	Ttt/tt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692826	89692826	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	43	112	0	ENST00000371953.3:c.313del	p.Cys105ValfsTer8	p.C105Vfs*8	ENST00000371953	NM_000314.4	104	Ttt/tt																																																																															
PGR	5241	MSKCC	GRCh37	11	100999443	100999443	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11571144		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	46	475	0	ENST00000325455.5:c.359C>T	p.Ala120Val	p.A120V	ENST00000325455	NM_001202474.3	120	gCg/gTg																																																																															
ATM	472	MSKCC	GRCh37	11	108216596	108216596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587778080		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	43	324	0	ENST00000278616.4:c.8545C>T	p.Arg2849Ter	p.R2849*	ENST00000278616	NM_000051.3	2849	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118371743	118371743	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782768278		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	96	354	0	ENST00000534358.1:c.6200G>A	p.Arg2067His	p.R2067H	ENST00000534358	NM_005933.3	2067	cGc/cAc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	97	341	4	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
IGF2	3481	MSKCC	GRCh37	11	2161456	2161456	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs970922682		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	140	499	0	ENST00000434045.2:c.71G>A	p.Arg24His	p.R24H	ENST00000434045	NM_001127598.1	24	cGc/cAc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	111	506	3	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18715683	18715683	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	123	343	0	ENST00000266497.5:c.3514T>G	p.Leu1172Val	p.L1172V	ENST00000266497		1172	Ttg/Gtg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	147	460	2	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	419118	419118	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	195	358	1	ENST00000399788.2:c.3229del	p.Arg1077GlyfsTer17	p.R1077Gfs*17	ENST00000399788	NM_001042603.1	1077	Cgg/gg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	440993	440993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	130	345	0	ENST00000399788.2:c.1765G>A	p.Ala589Thr	p.A589T	ENST00000399788	NM_001042603.1	589	Gct/Act																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647310	23647310	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	40	381	0	ENST00000261584.4:c.557del	p.Asn186IlefsTer7	p.N186Ifs*7	ENST00000261584	NM_024675.3	186	aAt/at																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639782	3639782	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149011965		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	128	447	1	ENST00000294008.3:c.3857C>T	p.Ala1286Val	p.A1286V	ENST00000294008	NM_032444.2	1286	gCg/gTg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	33	501	1	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	98	572	3	ENST00000268489.5:c.5677_5678del	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	131	533	1	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	236	581	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740623	58740624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs763475304		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	49	412	1	ENST00000305921.3:c.1535dup	p.Asn512LysfsTer16	p.N512Kfs*16	ENST00000305921	NM_003620.3	510	caa/cAaa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119024	70119024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	148	491	0	ENST00000245479.2:c.600del	p.Asn201ThrfsTer18	p.N201Tfs*18	ENST00000245479	NM_000346.3	199	tCc/tc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272513	15272513	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	70	431	0	ENST00000263388.2:c.5926del	p.Leu1976TyrfsTer36	p.L1976Yfs*36	ENST00000263388	NM_000435.2	1976	Cta/ta																																																																															
AXL	558	MSKCC	GRCh37	19	41736934	41736934	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768702995		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	135	523	0	ENST00000301178.4:c.649C>T	p.Arg217Cys	p.R217C	ENST00000301178	NM_021913.4	217	Cgc/Tgc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190742011	190742011	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377603311		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	110	333	0	ENST00000441310.2:c.2648G>A	p.Arg883His	p.R883H	ENST00000441310	NM_000534.4	883	cGt/cAt																																																																															
ALK	238	MSKCC	GRCh37	2	29451823	29451823	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	39	231	1	ENST00000389048.3:c.2742del	p.Trp915GlyfsTer24	p.W915Gfs*24	ENST00000389048	NM_004304.4	914	ggG/gg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21345925	21345925	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754364555		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	66	441	0	ENST00000215739.8:c.800G>A	p.Arg267His	p.R267H	ENST00000215739	NM_006767.3	267	cGc/cAc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279846	29279846	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	26	101	0	ENST00000544604.2:c.92del	p.Leu31ArgfsTer91	p.L31Rfs*91	ENST00000544604	NM_001206998.1	31	cTg/cg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446275	29446275	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	97	444	0	ENST00000544604.2:c.2111del	p.Gly704AlafsTer69	p.G704Afs*69	ENST00000544604	NM_001206998.1	702	aaG/aa																																																																															
EP300	2033	MSKCC	GRCh37	22	41536166	41536166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	81	335	0	ENST00000263253.7:c.1783C>T	p.Pro595Ser	p.P595S	ENST00000263253	NM_001429.3	595	Ccg/Tcg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119624643	119624643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	45	341	0	ENST00000316626.5:c.772C>T	p.Pro258Ser	p.P258S	ENST00000316626		258	Cca/Tca																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	265	393	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526210	31526210	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756928342		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	118	409	0	ENST00000344624.3:c.830G>A	p.Arg277His	p.R277H	ENST00000344624		277	cGc/cAc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	99	323	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
PARK2	5071	MSKCC	GRCh37	6	161990419	161990419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	117	357	0	ENST00000366898.1:c.901C>T	p.Leu301Phe	p.L301F	ENST00000366898	NM_004562.2	301	Ctc/Ttc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	106	446	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509676	106509676	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139426517		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	74	461	0	ENST00000359195.3:c.1670C>T	p.Ala557Val	p.A557V	ENST00000359195	NM_002649.2	557	gCg/gTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	252	322	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884448	151884448	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773744238		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	89	363	0	ENST00000262189.6:c.4907C>T	p.Thr1636Met	p.T1636M	ENST00000262189	NM_170606.2	1636	aCg/aTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	160	342	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			737	158	438	0	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540179	23540179	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	82	442	0	ENST00000380871.4:c.224A>G	p.Gln75Arg	p.Q75R	ENST00000380871	NM_006167.3	75	cAg/cGg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797261	135797261	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	152	356	0	ENST00000298552.3:c.608del	p.Leu203CysfsTer7	p.L203Cfs*7	ENST00000298552	NM_001162426.1	203	tTg/tg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409991	139409991	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	124	537	2	ENST00000277541.6:c.1847del	p.Gly616AlafsTer15	p.G616Afs*15	ENST00000277541	NM_017617.3	616	gGc/gc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341817	8341817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	79	366	0	ENST00000356435.5:c.4823C>T	p.Ala1608Val	p.A1608V	ENST00000356435		1608	gCa/gTa																																																																															
NADK	65220	MSKCC	GRCh37	1	1688035	1688035	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1490265077		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	142	410	0	ENST00000341426.5:c.406G>A	p.Val136Met	p.V136M	ENST00000341426	NM_023018.4	136	Gtg/Atg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206666363	206666363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	60	320	0	ENST00000367120.3:c.1843C>T	p.His615Tyr	p.H615Y	ENST00000367120	NM_014002.3	615	Cac/Tac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420274	49420274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	164	517	0	ENST00000301067.7:c.15475C>T	p.Arg5159Trp	p.R5159W	ENST00000301067	NM_003482.3	5159	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425453	49425453	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs922101505		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	143	637	0	ENST00000301067.7:c.13035A>C	p.Lys4345Asn	p.K4345N	ENST00000301067	NM_003482.3	4345	aaA/aaC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431651	49431651	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1353341181		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	123	577	0	ENST00000301067.7:c.9488G>A	p.Ser3163Asn	p.S3163N	ENST00000301067	NM_003482.3	3163	aGc/aAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42053937	42053937	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	87	261	0	ENST00000219905.7:c.7399G>A	p.Ala2467Thr	p.A2467T	ENST00000219905	NM_001164273.1	2467	Gcc/Acc																																																																															
BLM	641	MSKCC	GRCh37	15	91293220	91293220	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200897029		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	110	433	0	ENST00000355112.3:c.722G>A	p.Gly241Asp	p.G241D	ENST00000355112	NM_000057.2	241	gGc/gAc																																																																															
CBFB	865	MSKCC	GRCh37	16	67116121	67116121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	81	347	0	ENST00000412916.2:c.405G>T	p.Glu135Asp	p.E135D	ENST00000412916		135	gaG/gaT																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81946239	81946239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	101	355	0	ENST00000359376.3:c.1972G>A	p.Asp658Asn	p.D658N	ENST00000359376	NM_002661.3	658	Gac/Aac																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73774693	73774693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			24	16	31	0	ENST00000254810.4:c.394C>T	p.Arg132Trp	p.R132W	ENST00000254810	NM_005324.3	132	Cgg/Tgg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260199	19260199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	111	447	0	ENST00000162023.5:c.94G>A	p.Ala32Thr	p.A32T	ENST00000162023		32	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218480	36218480	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	81	412	0	ENST00000222270.7:c.4259T>C	p.Leu1420Pro	p.L1420P	ENST00000222270	NM_014727.1	1420	cTg/cCg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227813	36227813	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	32	552	0	ENST00000222270.7:c.7298G>T	p.Gly2433Val	p.G2433V	ENST00000222270	NM_014727.1	2433	gGg/gTg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45858062	45858062	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749852903		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	118	439	0	ENST00000391945.4:c.1591G>A	p.Val531Ile	p.V531I	ENST00000391945	NM_000400.3	531	Gtc/Atc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022317	31022318	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	128	480	0	ENST00000375687.4:c.1803_1804dup	p.Glu602GlyfsTer102	p.E602Gfs*102	ENST00000375687	NM_015338.5	601	acg/acGGg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46268459	46268461	+	frameshift_variant	Frame_Shift_Del	DEL	TAC	TAC	AT			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	153	489	0	ENST00000371998.3:c.2846_2848delinsAT	p.Leu949TyrfsTer36	p.L949Yfs*36	ENST00000371998		949	tTACcc/tATcc																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22161983	22161983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	108	342	0	ENST00000215832.6:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000215832	NM_002745.4	91	cGa/cAa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967170	134967170	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs377246782		P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	98	363	0	ENST00000398015.3:c.2509A>G	p.Ile837Val	p.I837V	ENST00000398015	NM_004441.4	837	Atc/Gtc																																																																															
ATR	545	MSKCC	GRCh37	3	142269140	142269140	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	98	246	0	ENST00000350721.4:c.2810del	p.Leu937TrpfsTer2	p.L937Wfs*2	ENST00000350721	NM_001184.3	937	tTg/tg																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799893	72799893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	37	297	0	ENST00000325599.8:c.1276G>A	p.Ala426Thr	p.A426T	ENST00000325599	NM_018130.2	426	Gca/Aca																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192493	138192493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	115	391	0	ENST00000237289.4:c.129G>A	p.Met43Ile	p.M43I	ENST00000237289	NM_001270507.1	43	atG/atA																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31238131	31238131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	91	258	0	ENST00000376228.5:c.751G>T	p.Asp251Tyr	p.D251Y	ENST00000376228	NM_002117.5	251	Gac/Tac																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70982070	70982070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	87	405	0	ENST00000276594.2:c.26C>T	p.Ala9Val	p.A9V	ENST00000276594	NM_024504.3	9	gCc/gTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971182	21971182	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	73	430	0	ENST00000304494.5:c.176T>C	p.Val59Ala	p.V59A	ENST00000304494	NM_000077.4	59	gTg/gCg																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123504129	123504129	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	97	299	0	ENST00000371139.4:c.305T>C	p.Val102Ala	p.V102A	ENST00000371139	NM_001114937.2	102	gTt/gCt																																																																															
MED12	9968	MSKCC	GRCh37	X	70354630	70354630	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	178	380	0	ENST00000374080.3:c.4795T>C	p.Ser1599Pro	p.S1599P	ENST00000374080		1599	Tct/Cct																																																																															
MTOR	2475	MSKCC	GRCh37	1	11169376	11169376	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	115	299	0	ENST00000361445.4:c.7499T>A	p.Ile2500Asn	p.I2500N	ENST00000361445	NM_004958.3	2500	aTt/aAt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0077044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	35	270	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
TET1	80312	MSKCC	GRCh37	10	70450582	70450582	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150708897		P-0077044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	65	317	0	ENST00000373644.4:c.5422G>A	p.Val1808Met	p.V1808M	ENST00000373644	NM_030625.2	1808	Gtg/Atg																																																																															
B2M	567	MSKCC	GRCh37	15	45007741	45007742	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0077044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	98	398	0	ENST00000558401.1:c.194_195del	p.Arg65AsnfsTer2	p.R65Nfs*2	ENST00000558401	NM_004048.2	63	gGA/g																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117707	70117707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367592961		P-0077044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	67	457	0	ENST00000245479.2:c.175G>A	p.Asp59Asn	p.D59N	ENST00000245479	NM_000346.3	59	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	94	430	0	ENST00000269305.4:c.817C>G	p.Arg273Gly	p.R273G	ENST00000269305	NM_001126112.2	273	Cgt/Ggt																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0077044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	96	357	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	132	399	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900961	3900961	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	42	339	0	ENST00000262367.5:c.135A>G	p.Ile45Met	p.I45M	ENST00000262367	NM_004380.2	45	atA/atG																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968165	68968165	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	38	258	0	ENST00000288368.4:c.1194C>G	p.Asp398Glu	p.D398E	ENST00000288368	NM_024870.2	398	gaC/gaG																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0077045-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	38	384	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077045-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	22	242	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	183	450	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473723	67473723	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223740		P-0077060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	188	400	0	ENST00000327367.4:c.803G>A	p.Arg268His	p.R268H	ENST00000327367	NM_005902.3	268	cGc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157520015	157520015	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	97	392	0	ENST00000346085.5:c.4084C>T	p.Gln1362Ter	p.Q1362*	ENST00000346085	NM_020732.3	1362	Cag/Tag																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45371718	45371718	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	207	354	0	ENST00000262160.6:c.1273G>T	p.Glu425Ter	p.E425*	ENST00000262160	NM_005901.5	425	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	142	242	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7989403	7989403	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371166120		P-0077060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			661	96	472	0	ENST00000319144.4:c.283C>T	p.Arg95Cys	p.R95C	ENST00000319144	NM_001139.2	95	Cgt/Tgt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983139	201983140	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCGG			P-0077060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	180	415	0	ENST00000359651.3:c.992_996dup	p.Met333GlyfsTer3	p.M333Gfs*3	ENST00000359651		330	agc/aGCCGGgc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139815580	139815580	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	219	477	0	ENST00000247668.2:c.1051G>T	p.Asp351Tyr	p.D351Y	ENST00000247668	NM_021138.3	351	Gat/Tat																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686985	37686985	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774869348		P-0077061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			780	42	504	0	ENST00000447079.4:c.3889G>A	p.Val1297Met	p.V1297M	ENST00000447079	NM_015083.1	1297	Gtg/Atg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259384	89259384	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			688	45	446	0	ENST00000336596.2:c.528G>T	p.Lys176Asn	p.K176N	ENST00000336596	NM_005233.5	176	aaG/aaT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508621	106508621	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	43	443	0	ENST00000359195.3:c.615G>T	p.Lys205Asn	p.K205N	ENST00000359195	NM_002649.2	205	aaG/aaT																																																																															
TET2	54790	MSKCC	GRCh37	4	106156804	106156805	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0077061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			768	75	543	0	ENST00000380013.4:c.1709dup	p.Arg571SerfsTer12	p.R571Sfs*12	ENST00000380013	NM_001127208.2	569	gcc/gCcc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176132950	176132950	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs150041404		P-0077061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	49	266	0	ENST00000367669.3:c.642+1G>A		p.X214_splice	ENST00000367669	NM_022457.5	214																																																																																
ETV6	2120	MSKCC	GRCh37	12	11905429	11905430	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0077061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	47	398	0	ENST00000396373.4:c.80dup	p.Tyr27Ter	p.Y27*	ENST00000396373	NM_001987.4	27	tac/tAac																																																																															
SESN1	27244	MSKCC	GRCh37	6	109323516	109323516	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077061-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	47	372	0	ENST00000436639.2:c.310G>T	p.Gly104Ter	p.G104*	ENST00000436639	NM_014454.2	104	Gga/Tga																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136044	64136044	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs144214742		P-0077073-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	189	401	0	ENST00000334205.4:c.1305G>C	p.Gln435His	p.Q435H	ENST00000334205	NM_003942.2	435	caG/caC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425381	49425381	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077073-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			582	111	539	0	ENST00000301067.7:c.13107G>T	p.Leu4369Phe	p.L4369F	ENST00000301067	NM_003482.3	4369	ttG/ttT																																																																															
EP300	2033	MSKCC	GRCh37	22	41537208	41537208	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077073-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	80	322	0	ENST00000263253.7:c.2035C>T	p.Gln679Ter	p.Q679*	ENST00000263253	NM_001429.3	679	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077079-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	26	384	0	ENST00000269305.4:c.772G>C	p.Glu258Gln	p.E258Q	ENST00000269305	NM_001126112.2	258	Gaa/Caa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226769	2226769	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761386617		P-0077079-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			661	37	572	0	ENST00000398665.3:c.4249G>A	p.Glu1417Lys	p.E1417K	ENST00000398665	NM_032482.2	1417	Gag/Aag																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031363	11031363	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077079-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			580	33	524	0	ENST00000327064.4:c.1363C>T	p.Gln455Ter	p.Q455*	ENST00000327064	NM_199141.1	455	Cag/Tag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376419	118376420	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0077079-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			543	69	497	1	ENST00000534358.1:c.9812_9813delinsAT	p.Leu3271His	p.L3271H	ENST00000534358	NM_005933.3	3271	cTG/cAT																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0077082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	57	271	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239902	53239902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	88	376	0	ENST00000375401.3:c.1539G>T	p.Trp513Cys	p.W513C	ENST00000375401	NM_004187.3	513	tgG/tgT																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123901	46123901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	105	304	0	ENST00000334344.6:c.167C>T	p.Thr56Ile	p.T56I	ENST00000334344	NM_152641.2	56	aCt/aTt																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194670	29194670	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs772256235		P-0077082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	86	387	0	ENST00000240100.2:c.1058G>T	p.Arg353Leu	p.R353L	ENST00000240100	NM_001394.6	353	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0077082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	65	226	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229570	5229570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	57	307	0	ENST00000357368.4:c.2281G>T	p.Val761Leu	p.V761L	ENST00000357368	NM_002850.3	761	Gtg/Ttg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543895	212543895	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	91	324	0	ENST00000342788.4:c.1504G>T	p.Val502Leu	p.V502L	ENST00000342788	NM_005235.2	502	Gtg/Ttg																																																																															
PAX5	5079	MSKCC	GRCh37	9	36840570	36840570	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	94	302	0	ENST00000358127.4:c.1163A>G	p.Tyr388Cys	p.Y388C	ENST00000358127	NM_001280556.1	388	tAt/tGt																																																																															
AR	367	MSKCC	GRCh37	X	66942734	66942734	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	73	250	0	ENST00000374690.3:c.2515C>A	p.Leu839Ile	p.L839I	ENST00000374690	NM_000044.3	839	Ctc/Atc																																																																															
YES1	7525	MSKCC	GRCh37	18	736858	736858	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	85	281	0	ENST00000314574.4:c.1241A>G	p.Asp414Gly	p.D414G	ENST00000314574	NM_005433.3	414	gAc/gGc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130405	29130405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	84	328	0	ENST00000328354.6:c.305G>A	p.Gly102Glu	p.G102E	ENST00000328354	NM_007194.3	102	gGa/gAa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589588	67589590	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0077083-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	96	238	0	ENST00000274335.5:c.1351_1353del	p.Glu451del	p.E451del	ENST00000274335		451	GAA/-																																																																															
JAK1	3716	MSKCC	GRCh37	1	65303751	65303751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077083-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	148	316	0	ENST00000342505.4:c.3004C>T	p.Arg1002Trp	p.R1002W	ENST00000342505	NM_002227.2	1002	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240731	55240731	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs201580890		P-0077083-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	162	457	0	ENST00000275493.2:c.1975G>C	p.Val659Leu	p.V659L	ENST00000275493	NM_005228.3	659	Gtg/Ctg																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	111	421	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	86	377	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	71	480	0	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778437	3778439	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-	rs746858489		P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	50	517	6	ENST00000262367.5:c.6609_6611del	p.Gln2216del	p.Q2216del	ENST00000262367	NM_004380.2	2203	caACAg/cag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	206	372	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	74	430	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163553	32163554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs777647776		P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	55	392	4	ENST00000375023.3:c.5672dup	p.Gly1892ArgfsTer24	p.G1892Rfs*24	ENST00000375023	NM_004557.3	1891	ggc/ggGc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41239933	41239933	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	47	250	0	ENST00000379561.5:c.417del	p.Ala140ProfsTer193	p.A140Pfs*193	ENST00000379561	NM_002015.3	139	ccC/cc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372361	55372361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	123	543	0	ENST00000297316.4:c.1051C>T	p.Pro351Ser	p.P351S	ENST00000297316	NM_022454.3	351	Ccc/Tcc																																																																															
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	94	451	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845883	72845883	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756387925		P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	93	439	0	ENST00000268489.5:c.3584G>A	p.Arg1195His	p.R1195H	ENST00000268489	NM_006885.3	1195	cGc/cAc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	75	344	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ATR	545	MSKCC	GRCh37	3	142277508	142277508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759350161		P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	65	302	0	ENST00000350721.4:c.1843G>A	p.Ala615Thr	p.A615T	ENST00000350721	NM_001184.3	615	Gct/Act																																																																															
B2M	567	MSKCC	GRCh37	15	45007806	45007807	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	49	417	0	ENST00000558401.1:c.253_254del	p.Leu85ValfsTer4	p.L85Vfs*4	ENST00000558401	NM_004048.2	85	TTg/g																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905960	50905960	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777944185		P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	82	482	0	ENST00000440232.2:c.932G>A	p.Arg311His	p.R311H	ENST00000440232	NM_002691.3	311	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223614	36223614	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	112	601	0	ENST00000222270.7:c.6169del	p.Arg2057AlafsTer34	p.R2057Afs*34	ENST00000222270	NM_014727.1	2055	gCc/gc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178257	56178258	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	109	420	0	ENST00000399503.3:c.3236dup	p.Asn1079LysfsTer2	p.N1079Kfs*2	ENST00000399503	NM_005921.1	1077	tca/tcAa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781160	135781160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	104	507	0	ENST00000298552.3:c.1805C>T	p.Pro602Leu	p.P602L	ENST00000298552	NM_001162426.1	602	cCc/cTc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860074	57860075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs774148738		P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	74	429	2	ENST00000228682.2:c.821dup	p.Cys275LeufsTer32	p.C275Lfs*32	ENST00000228682	NM_005269.2	272	tgg/tGgg																																																																															
MGA	23269	MSKCC	GRCh37	15	41961400	41961400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	107	398	0	ENST00000219905.7:c.308G>A	p.Arg103His	p.R103H	ENST00000219905	NM_001164273.1	103	cGc/cAc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004862	150004862	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	118	497	0	ENST00000253339.5:c.1363C>T	p.Gln455Ter	p.Q455*	ENST00000253339		455	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	57	275	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	74	406	5	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
EP300	2033	MSKCC	GRCh37	22	41573534	41573534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	123	545	0	ENST00000263253.7:c.5819G>A	p.Arg1940His	p.R1940H	ENST00000263253	NM_001429.3	1940	cGc/cAc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46738148	46738148	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs543289483		P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	86	406	0	ENST00000371975.4:c.1180C>T	p.Arg394Trp	p.R394W	ENST00000371975	NM_003579.3	394	Cgg/Tgg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50830397	50830398	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	80	369	0	ENST00000398568.2:c.2842dup	p.Thr948AsnfsTer45	p.T948Nfs*45	ENST00000398568	NM_001042412.1	947	cca/ccAa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163374	32163374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	106	465	0	ENST00000375023.3:c.5852G>T	p.Cys1951Phe	p.C1951F	ENST00000375023	NM_004557.3	1951	tGt/tTt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262148	16262148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	28	454	0	ENST00000375759.3:c.9413G>A	p.Ser3138Asn	p.S3138N	ENST00000375759	NM_015001.2	3138	aGc/aAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933719	39933719	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	71	235	0	ENST00000378444.4:c.880A>G	p.Ser294Gly	p.S294G	ENST00000378444	NM_001123385.1	294	Agc/Ggc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949125	44949125	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	20	159	0	ENST00000377967.4:c.3686A>G	p.Gln1229Arg	p.Q1229R	ENST00000377967	NM_021140.2	1229	cAg/cGg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056089	26056089	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1018305284		P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	96	436	0	ENST00000343677.2:c.568G>A	p.Ala190Thr	p.A190T	ENST00000343677	NM_005319.3	190	Gct/Act																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443527	49443527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	85	460	0	ENST00000301067.7:c.3844G>T	p.Gly1282Cys	p.G1282C	ENST00000301067	NM_003482.3	1282	Ggc/Tgc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43769902	43769902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	88	366	0	ENST00000382044.4:c.844G>A	p.Glu282Lys	p.E282K	ENST00000382044	NM_001141980.1	282	Gaa/Aaa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351346	89351346	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	70	507	0	ENST00000301030.4:c.1604A>G	p.Asn535Ser	p.N535S	ENST00000301030	NM_001256183.1	535	aAc/aGc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272416	15272416	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	26	442	0	ENST00000263388.2:c.6023C>A	p.Pro2008Gln	p.P2008Q	ENST00000263388	NM_000435.2	2008	cCg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576870	7576870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs876659384		P-0077087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	34	487	0	ENST00000269305.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000269305	NM_001126112.2	326	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	45	238	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	148	208	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479756	67479756	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	92	323	0	ENST00000327367.4:c.1063T>C	p.Ser355Pro	p.S355P	ENST00000327367	NM_005902.3	355	Tcg/Ccg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144146	11144146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	156	364	0	ENST00000344626.4:c.3727C>T	p.Arg1243Trp	p.R1243W	ENST00000344626	NM_003072.3	1243	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0077090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	43	187	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112174262	112174262	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs786202995		P-0077090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	128	362	0	ENST00000257430.4:c.2971G>T	p.Glu991Ter	p.E991*	ENST00000257430	NM_000038.5	991	Gaa/Taa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784942	9784942	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs964857770		P-0077090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	42	347	0	ENST00000377346.4:c.2945G>A	p.Arg982Gln	p.R982Q	ENST00000377346	NM_005026.3	982	cGg/cAg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67459115	67459115	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0077090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	256	343	0	ENST00000327367.4:c.533-2A>C		p.X178_splice	ENST00000327367	NM_005902.3	178																																																																																
SOX9	6662	MSKCC	GRCh37	17	70118945	70118945	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs104894647		P-0077090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	169	384	0	ENST00000245479.2:c.517A>G	p.Lys173Glu	p.K173E	ENST00000245479	NM_000346.3	173	Aag/Gag																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368199	45368205	+	frameshift_variant,stop_lost	Frame_Shift_Del	DEL	TATGACA	TATGACA	-			P-0077090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	176	269	0	ENST00000262160.6:c.1397_1403del	p.Met466LysfsTer12	p.M466Kfs*12	ENST00000262160	NM_005901.5	466	aTGTCATAa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175734	112175763	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTCCAGATGCTGATACTTTATTACATTT	TCTTCCAGATGCTGATACTTTATTACATTT	C			P-0077090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	152	394	0	ENST00000257430.4:c.4443_4472delinsC	p.Leu1482CysfsTer22	p.L1482Cfs*22	ENST00000257430	NM_000038.5	1481	gtTCTTCCAGATGCTGATACTTTATTACATTTt/gtCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0077092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	71	298	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0077092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	9	299	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0077092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	78	561	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245380	153245380	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	34	364	0	ENST00000281708.4:c.1811A>C	p.Lys604Thr	p.K604T	ENST00000281708	NM_033632.3	604	aAa/aCa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332919	153332919	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs781123562		P-0077092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	83	443	0	ENST00000281708.4:c.37C>T	p.Arg13Ter	p.R13*	ENST00000281708	NM_033632.3	13	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0077092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	184	494	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0077092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	46	509	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TERT	7015	MSKCC	GRCh37	5	1294328	1294328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	106	474	0	ENST00000310581.5:c.673G>A	p.Gly225Arg	p.G225R	ENST00000310581	NM_198253.2	225	Ggg/Agg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710585	114710585	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	104	442	0	ENST00000543371.1:c.70G>C	p.Glu24Gln	p.E24Q	ENST00000543371	NM_001198531.1	24	Gag/Cag																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281753	49281753	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			793	202	512	0	ENST00000282018.3:c.800G>T	p.Arg267Met	p.R267M	ENST00000282018	NM_020377.2	267	aGg/aTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047307	180047307	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs147284137		P-0077092-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	112	473	0	ENST00000261937.6:c.2408C>T	p.Pro803Leu	p.P803L	ENST00000261937	NM_182925.4	803	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579462	7579463	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0077098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	145	607	0	ENST00000269305.4:c.224dup	p.Ala76CysfsTer73	p.A76Cfs*73	ENST00000269305	NM_001126112.2	75	cct/ccCt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272201	15272201	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113178142		P-0077098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	41	401	0	ENST00000263388.2:c.6238C>T	p.Arg2080Trp	p.R2080W	ENST00000263388	NM_000435.2	2080	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0077098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	42	176	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0077098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	88	291	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004907	150004907	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1372462435		P-0077098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	61	443	0	ENST00000253339.5:c.1318C>G	p.Pro440Ala	p.P440A	ENST00000253339		440	Cca/Gca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549815	187549815	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	65	381	0	ENST00000441802.2:c.4426T>A	p.Leu1476Met	p.L1476M	ENST00000441802	NM_005245.3	1476	Ttg/Atg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467652	66467652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	56	374	0	ENST00000273854.3:c.617G>T	p.Ser206Ile	p.S206I	ENST00000273854	NM_004439.5	206	aGc/aTc																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137540437	137540437	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	33	410	0	ENST00000367739.4:c.28G>C	p.Val10Leu	p.V10L	ENST00000367739	NM_000416.2	10	Gtc/Ctc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16265849	16265849	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367592589		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	147	198	0	ENST00000375759.3:c.10922G>A	p.Arg3641His	p.R3641H	ENST00000375759	NM_015001.2	3641	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023559	27023560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	63	209	0	ENST00000324856.7:c.671dup	p.Pro225AlafsTer175	p.P225Afs*175	ENST00000324856	NM_006015.4	222	tac/taCc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46511751	46511751	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	19	153	0	ENST00000262741.5:c.1026del	p.Phe342LeufsTer40	p.F342Lfs*40	ENST00000262741	NM_003629.3	342	ttT/tt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	98	191	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
CTR9	9646	MSKCC	GRCh37	11	10796811	10796811	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	132	162	1	ENST00000361367.2:c.2949del	p.Lys983AsnfsTer22	p.K983Nfs*22	ENST00000361367	NM_014633.3	981	ccA/cc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118359423	118359425	+	inframe_deletion	In_Frame_Del	DEL	GTC	GTC	-			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	161	225	0	ENST00000534358.1:c.4432_4434del	p.Arg1478del	p.R1478del	ENST00000534358	NM_005933.3	1476	tGTCgt/tgt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs767319284		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	102	245	1	ENST00000337652.1:c.1561dup	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	52	158	0	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	106	129	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	124	246	3	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	442721	442721	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	39	188	0	ENST00000399788.2:c.1585C>T	p.Gln529Ter	p.Q529*	ENST00000399788	NM_001042603.1	529	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49442932	49442932	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886049484		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	151	190	0	ENST00000301067.7:c.3976C>T	p.Arg1326Trp	p.R1326W	ENST00000301067	NM_003482.3	1326	Cgg/Tgg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56477655	56477655	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142735651		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	152	195	0	ENST00000267101.3:c.203C>T	p.Thr68Met	p.T68M	ENST00000267101	NM_001982.3	68	aCg/aTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436360	110436360	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1201419105		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	54	355	0	ENST00000375856.3:c.2041G>A	p.Ala681Thr	p.A681T	ENST00000375856	NM_003749.2	681	Gcc/Acc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549232	21549232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	57	246	0	ENST00000382592.4:c.3044G>A	p.Ser1015Asn	p.S1015N	ENST00000382592	NM_014572.2	1015	aGc/aAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28893590	28893590	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752645756		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	102	133	0	ENST00000282397.4:c.3256G>A	p.Gly1086Arg	p.G1086R	ENST00000282397	NM_002019.4	1086	Gga/Aga																																																																															
FLT1	2321	MSKCC	GRCh37	13	28908194	28908194	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767930948		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	169	168	0	ENST00000282397.4:c.2561C>T	p.Thr854Met	p.T854M	ENST00000282397	NM_002019.4	854	aCg/aTg																																																																															
MGA	23269	MSKCC	GRCh37	15	41961511	41961511	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528733174		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	81	200	0	ENST00000219905.7:c.419G>A	p.Arg140His	p.R140H	ENST00000219905	NM_001164273.1	140	cGt/cAt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs774532876		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	124	224	1	ENST00000294008.3:c.1406del	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																															
CYLD	1540	MSKCC	GRCh37	16	50826571	50826571	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1489875475		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	26	126	0	ENST00000398568.2:c.2296A>T	p.Ile766Phe	p.I766F	ENST00000398568	NM_001042412.1	766	Att/Ttt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944151	81944151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	28	192	0	ENST00000359376.3:c.1760G>A	p.Arg587Gln	p.R587Q	ENST00000359376	NM_002661.3	587	cGg/cAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346157	89346158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	29	261	0	ENST00000301030.4:c.6792dup	p.Ala2265ArgfsTer8	p.A2265Rfs*8	ENST00000301030	NM_001256183.1	2264	-/C																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	33	179	0	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	54	265	0	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1297203260		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	152	214	0	ENST00000245479.2:c.916del	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579344	7579344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	129	236	0	ENST00000269305.4:c.343C>T	p.His115Tyr	p.H115Y	ENST00000269305	NM_001126112.2	115	Cat/Tat																																																																															
YES1	7525	MSKCC	GRCh37	18	736907	736907	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs986350587		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	66	227	0	ENST00000314574.4:c.1192C>T	p.Arg398Trp	p.R398W	ENST00000314574	NM_005433.3	398	Cgg/Tgg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943705	17943705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	33	285	0	ENST00000458235.1:c.2384C>T	p.Ala795Val	p.A795V	ENST00000458235	NM_000215.3	795	gCc/gTc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257366	19257366	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	48	262	0	ENST00000162023.5:c.767del	p.Pro256GlnfsTer?	p.P256Qfs*?	ENST00000162023		256	cCa/ca																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226860	2226860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	131	267	2	ENST00000398665.3:c.4340C>T	p.Ala1447Val	p.A1447V	ENST00000398665	NM_032482.2	1447	gCg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221756	36221756	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377420237		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	78	234	0	ENST00000222270.7:c.5425G>A	p.Ala1809Thr	p.A1809T	ENST00000222270	NM_014727.1	1809	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222827	36222828	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	121	180	0	ENST00000222270.7:c.5462dup	p.Leu1822ThrfsTer12	p.L1822Tfs*12	ENST00000222270	NM_014727.1	1819	gac/gaCc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909673	50909673	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771858429		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	148	210	0	ENST00000440232.2:c.1393C>T	p.Arg465Trp	p.R465W	ENST00000440232	NM_002691.3	465	Cgg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212055	5212055	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749770933		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	147	254	0	ENST00000357368.4:c.4976G>A	p.Arg1659His	p.R1659H	ENST00000357368	NM_002850.3	1659	cGc/cAc																																																																															
INSR	3643	MSKCC	GRCh37	19	7170584	7170584	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757634971		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	167	165	0	ENST00000302850.5:c.1447G>A	p.Asp483Asn	p.D483N	ENST00000302850	NM_000208.2	483	Gac/Aac																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204732741	204732741	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	118	195	0	ENST00000302823.3:c.81del	p.Leu28PhefsTer44	p.L28Ffs*44	ENST00000302823	NM_005214.4	26	Ttt/tt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023726	31023726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768022784		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	87	226	0	ENST00000375687.4:c.3211G>A	p.Ala1071Thr	p.A1071T	ENST00000375687	NM_015338.5	1071	Gcg/Acg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384650	31384651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756395138		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	120	173	0	ENST00000328111.2:c.1359dup	p.Leu454AlafsTer11	p.L454Afs*11	ENST00000328111	NM_006892.3	451	gag/gaGg																																																																															
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	153	246	0	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260193	149260194	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTG	rs748784098		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	24	168	0	ENST00000360632.3:c.697_699dup	p.Gln233dup	p.Q233dup	ENST00000360632	NM_015472.4	233	-/CAG																																																																															
TP63	8626	MSKCC	GRCh37	3	189526314	189526314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	155	237	0	ENST00000264731.3:c.578C>T	p.Thr193Met	p.T193M	ENST00000264731	NM_003722.4	193	aCg/aTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732957	30732957	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs727504421		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	155	184	0	ENST00000295754.5:c.1570G>A	p.Asp524Asn	p.D524N	ENST00000295754	NM_003242.5	524	Gac/Aac																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	282	203	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936356	49936356	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148258933		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	186	263	0	ENST00000296474.3:c.1492G>A	p.Val498Met	p.V498M	ENST00000296474	NM_002447.2	498	Gtg/Atg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441282	52441282	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1268089896		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	37	241	0	ENST00000460680.1:c.488G>A	p.Arg163Gln	p.R163Q	ENST00000460680	NM_004656.3	163	cGg/cAg																																																																															
TET2	54790	MSKCC	GRCh37	4	106158031	106158031	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148297543		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	99	279	0	ENST00000380013.4:c.2932C>T	p.His978Tyr	p.H978Y	ENST00000380013	NM_001127208.2	978	Cac/Tac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	178	271	1	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521298	187521299	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	135	232	0	ENST00000441802.2:c.11856dup	p.Gly3953TrpfsTer19	p.G3953Wfs*19	ENST00000441802	NM_005245.3	3952	-/T																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	121	120	0	ENST00000303115.3:c.361del	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177849	56177857	+	inframe_deletion	In_Frame_Del	DEL	CAACAACAA	CAACAACAA	-	rs570353965		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	117	256	0	ENST00000399503.3:c.2839_2847del	p.Thr947_Thr949del	p.T947_T949del	ENST00000399503	NM_005921.1	941	tCAACAACAAca/tca																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178503	56178503	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	110	164	0	ENST00000399503.3:c.3479del	p.Lys1160ArgfsTer12	p.K1160Rfs*12	ENST00000399503	NM_005921.1	1159	gAa/ga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	79	206	0	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	118	141	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983058	149983058	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	118	196	0	ENST00000253339.5:c.3200del	p.Asn1067MetfsTer61	p.N1067Mfs*61	ENST00000253339		1067	aAt/at																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983274	149983274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	111	172	0	ENST00000253339.5:c.2984G>A	p.Arg995His	p.R995H	ENST00000253339		995	cGc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502280	157502280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775526039		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	154	216	0	ENST00000346085.5:c.3313G>A	p.Val1105Ile	p.V1105I	ENST00000346085	NM_020732.3	1105	Gtc/Atc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672423	30672423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370120921		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	250	302	0	ENST00000376406.3:c.4537C>T	p.Arg1513Trp	p.R1513W	ENST00000376406	NM_014641.2	1513	Cgg/Tgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163553	32163554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs777647776		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	70	215	2	ENST00000375023.3:c.5672dup	p.Gly1892ArgfsTer24	p.G1892Rfs*24	ENST00000375023	NM_004557.3	1891	ggc/ggGc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169036	32169036	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745902446		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	150	240	0	ENST00000375023.3:c.3997C>T	p.Arg1333Cys	p.R1333C	ENST00000375023	NM_004557.3	1333	Cgt/Tgt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289196	33289196	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771284147		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	86	197	0	ENST00000374542.5:c.356G>A	p.Arg119Gln	p.R119Q	ENST00000374542	NM_001141970.1	119	cGg/cAg																																																																															
MET	4233	MSKCC	GRCh37	7	116339803	116339803	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200776610		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	25	225	0	ENST00000397752.3:c.665C>T	p.Thr222Met	p.T222M	ENST00000397752	NM_000245.2	222	aCg/aTg																																																																															
SMO	6608	MSKCC	GRCh37	7	128845574	128845574	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1405848770		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	136	232	0	ENST00000249373.3:c.871C>T	p.Arg291Ter	p.R291*	ENST00000249373	NM_005631.4	291	Cga/Tga																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956778	68956778	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746227590		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	95	163	0	ENST00000288368.4:c.896G>A	p.Arg299Gln	p.R299Q	ENST00000288368	NM_024870.2	299	cGg/cAg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128322020	128322020	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	103	171	1	ENST00000265960.3:c.740del	p.Pro247ArgfsTer27	p.P247Rfs*27	ENST00000265960	NM_001006617.1	247	cCg/cg																																																																															
ABL1	25	MSKCC	GRCh37	9	133759697	133759697	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776289598		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	34	249	0	ENST00000318560.5:c.2020C>T	p.Arg674Trp	p.R674W	ENST00000318560	NM_005157.4	674	Cgg/Tgg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797221	135797222	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-	rs118203417		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	203	168	0	ENST00000298552.3:c.647_648del	p.Phe216Ter	p.F216*	ENST00000298552	NM_001162426.1	216	tTT/t																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401386	139401386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	34	211	0	ENST00000277541.6:c.3683C>T	p.Pro1228Leu	p.P1228L	ENST00000277541	NM_017617.3	1228	cCc/cTc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139820258	139820258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	190	224	0	ENST00000247668.2:c.1411C>T	p.Leu471Phe	p.L471F	ENST00000247668	NM_021138.3	471	Ctc/Ttc																																																																															
SYK	6850	MSKCC	GRCh37	9	93606272	93606273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1182878074		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	63	196	0	ENST00000375746.1:c.98dup	p.Met34HisfsTer3	p.M34Hfs*3	ENST00000375746	NM_001174167.1	31	cag/caGg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	154	198	0	ENST00000331920.6:c.3921del	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	32	254	0	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156719	20156719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	43	152	0	ENST00000379607.5:c.38G>A	p.Arg13His	p.R13H	ENST00000379607	NM_001412.3	13	cGc/cAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190756	11190756	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1283402697		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	151	192	0	ENST00000361445.4:c.5443A>G	p.Lys1815Glu	p.K1815E	ENST00000361445	NM_004958.3	1815	Aag/Gag																																																																															
MAD2L2	10459	MSKCC	GRCh37	1	11740421	11740421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	139	176	0	ENST00000235310.3:c.148G>A	p.Val50Met	p.V50M	ENST00000235310		50	Gtg/Atg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466260	120466260	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	113	174	0	ENST00000256646.2:c.4859G>T	p.Gly1620Val	p.G1620V	ENST00000256646	NM_024408.3	1620	gGc/gTc																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150921917	150921917	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	148	197	0	ENST00000271640.5:c.1496T>C	p.Val499Ala	p.V499A	ENST00000271640	NM_001145415.1	499	gTg/gCg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193099371	193099371	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs778134705		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	114	125	0	ENST00000367435.3:c.305C>T	p.Ala102Val	p.A102V	ENST00000367435	NM_024529.4	102	gCg/gTg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123243277	123243277	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	98	260	0	ENST00000358487.5:c.2236del	p.Gln746ArgfsTer9	p.Q746Rfs*9	ENST00000358487	NM_000141.4	746	Cag/ag																																																																															
ATM	472	MSKCC	GRCh37	11	108164157	108164157	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	75	145	0	ENST00000278616.4:c.4729A>G	p.Thr1577Ala	p.T1577A	ENST00000278616	NM_000051.3	1577	Act/Gct																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344540	118344540	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	53	231	0	ENST00000534358.1:c.2666G>T	p.Arg889Met	p.R889M	ENST00000534358	NM_005933.3	889	aGg/aTg																																																																															
SESN3	143686	MSKCC	GRCh37	11	94908807	94908807	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	130	135	0	ENST00000536441.1:c.1248-1G>T		p.X416_splice	ENST00000536441	NM_144665.3	416																																																																																
SETD8	387893	MSKCC	GRCh37	12	123874090	123874090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	82	213	0	ENST00000330479.4:c.121C>A	p.Arg41Ser	p.R41S	ENST00000330479	NM_020382.3	41	Cgc/Agc																																																																															
POLE	5426	MSKCC	GRCh37	12	133218342	133218342	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	38	167	0	ENST00000320574.5:c.5269A>C	p.Ser1757Arg	p.S1757R	ENST00000320574	NM_006231.2	1757	Agc/Cgc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18649061	18649061	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1262695281		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	101	162	0	ENST00000266497.5:c.2736G>T	p.Met912Ile	p.M912I	ENST00000266497		912	atG/atT																																																																															
MAX	4149	MSKCC	GRCh37	14	65543352	65543352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	176	214	0	ENST00000358664.4:c.325G>A	p.Ala109Thr	p.A109T	ENST00000358664	NM_002382.4	109	Gcc/Acc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88671965	88671965	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	76	149	0	ENST00000360948.2:c.1205A>T	p.Glu402Val	p.E402V	ENST00000360948	NM_001012338.2	402	gAg/gTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2131730	2131730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	138	263	0	ENST00000219476.3:c.3745C>A	p.Leu1249Met	p.L1249M	ENST00000219476	NM_000548.3	1249	Ctg/Atg																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30134423	30134423	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	111	204	0	ENST00000263025.4:c.108C>A	p.Phe36Leu	p.F36L	ENST00000263025	NM_002746.2	36	ttC/ttA																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632350	3632350	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751456750		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	94	164	0	ENST00000294008.3:c.5498G>A	p.Arg1833Gln	p.R1833Q	ENST00000294008	NM_032444.2	1833	cGg/cAg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81960754	81960754	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs764926974		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	34	159	0	ENST00000359376.3:c.2485A>G	p.Thr829Ala	p.T829A	ENST00000359376	NM_002661.3	829	Act/Gct																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916181	9916181	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	74	200	0	ENST00000330684.3:c.2108A>G	p.Gln703Arg	p.Q703R	ENST00000330684	NM_001134407.1	703	cAg/cGg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266846	18266846	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	32	171	0	ENST00000222254.8:c.157A>T	p.Ser53Cys	p.S53C	ENST00000222254	NM_005027.3	53	Agc/Tgc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222100	2222100	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1256978379		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	143	235	0	ENST00000398665.3:c.2932G>A	p.Val978Met	p.V978M	ENST00000398665	NM_032482.2	978	Gtg/Atg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223462	36223462	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	42	266	0	ENST00000222270.7:c.6012G>T	p.Gln2004His	p.Q2004H	ENST00000222270	NM_014727.1	2004	caG/caT																																																																															
AXL	558	MSKCC	GRCh37	19	41765522	41765522	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1036430672		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	80	228	0	ENST00000301178.4:c.2398C>T	p.Arg800Trp	p.R800W	ENST00000301178	NM_021913.4	800	Cgg/Tgg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855547	45855547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1300465184		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	123	236	0	ENST00000391945.4:c.2110G>A	p.Ala704Thr	p.A704T	ENST00000391945	NM_000400.3	704	Gcc/Acc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45856057	45856057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	50	241	0	ENST00000391945.4:c.1849G>A	p.Ala617Thr	p.A617T	ENST00000391945	NM_000400.3	617	Gcc/Acc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244194	5244194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	37	232	0	ENST00000357368.4:c.1288C>T	p.Pro430Ser	p.P430S	ENST00000357368	NM_002850.3	430	Ccg/Tcg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716341	52716341	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	28	202	0	ENST00000322088.6:c.785T>C	p.Met262Thr	p.M262T	ENST00000322088	NM_014225.5	262	aTg/aCg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794819	242794819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	95	214	1	ENST00000334409.5:c.390del	p.Lys131ArgfsTer14	p.K131Rfs*14	ENST00000334409	NM_005018.2	130	ccC/cc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027713	48027713	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	142	166	0	ENST00000234420.5:c.2591G>T	p.Gly864Val	p.G864V	ENST00000234420	NM_000179.2	864	gGa/gTa																																																																															
ERG	2078	MSKCC	GRCh37	21	39764322	39764322	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754469072		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	159	206	0	ENST00000288319.7:c.790G>A	p.Gly264Ser	p.G264S	ENST00000288319	NM_182918.3	264	Ggc/Agc																																																																															
PPARG	5468	MSKCC	GRCh37	3	12475543	12475543	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	46	218	0	ENST00000287820.6:c.1417A>C	p.Ile473Leu	p.I473L	ENST00000287820	NM_015869.4	473	Att/Ctt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851673	134851673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	107	208	0	ENST00000398015.3:c.1079G>A	p.Cys360Tyr	p.C360Y	ENST00000398015	NM_004441.4	360	tGc/tAc																																																																															
MITF	4286	MSKCC	GRCh37	3	70014014	70014014	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769972649		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	28	184	0	ENST00000352241.4:c.1178C>T	p.Ala393Val	p.A393V	ENST00000352241	NM_198159.2	393	gCt/gTt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295327	1295327	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	115	267	0				ENST00000310581	NM_198253.2																																																																																	
TERT	7015	MSKCC	GRCh37	5	1295446	1295446	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	43	263	0				ENST00000310581	NM_198253.2																																																																																	
RAD50	10111	MSKCC	GRCh37	5	131911432	131911465	+	splice_region_variant,intron_variant	Splice_Region	DEL	AAAGTAACATAAGTTTTTTCTGTGTTTTCCTTCA	AAAGTAACATAAGTTTTTTCTGTGTTTTCCTTCA	-			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	27	107	0	ENST00000265335.6:c.214-35_214-2del		p.X72_splice	ENST00000265335		72																																																																																
FLT4	2324	MSKCC	GRCh37	5	180051032	180051032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	39	240	0	ENST00000261937.6:c.1451C>T	p.Pro484Leu	p.P484L	ENST00000261937	NM_182925.4	484	cCa/cTa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67590414	67590414	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	33	145	0	ENST00000274335.5:c.1476A>C	p.Lys492Asn	p.K492N	ENST00000274335		492	aaA/aaC																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239063	31239063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	70	261	0	ENST00000376228.5:c.406G>T	p.Gly136Trp	p.G136W	ENST00000376228	NM_002117.5	136	Ggg/Tgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170061	32170061	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	29	232	0	ENST00000375023.3:c.3547G>T	p.Gly1183Ter	p.G1183*	ENST00000375023	NM_004557.3	1183	Gga/Tga																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739826	145739827	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	42	240	0	ENST00000428558.2:c.1703dup	p.Ile569AspfsTer14	p.I569Dfs*14	ENST00000428558	NM_004260.3	568	aag/aaAg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046362	69046362	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	82	224	0	ENST00000288368.4:c.3835T>A	p.Ser1279Thr	p.S1279T	ENST00000288368	NM_024870.2	1279	Tct/Act																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969352	44969352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	32	159	0	ENST00000377967.4:c.4034C>T	p.Thr1345Ile	p.T1345I	ENST00000377967	NM_021140.2	1345	aCt/aTt																																																																															
ARAF	369	MSKCC	GRCh37	X	47422427	47422427	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779656098		P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	64	204	0	ENST00000377045.4:c.61G>A	p.Val21Ile	p.V21I	ENST00000377045	NM_001654.4	21	Gtc/Atc																																																																															
MED12	9968	MSKCC	GRCh37	X	70341418	70341418	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	72	190	0	ENST00000374080.3:c.856del	p.Glu286AsnfsTer27	p.E286Nfs*27	ENST00000374080		285	Ggg/gg																																																																															
ATRX	546	MSKCC	GRCh37	X	76938137	76938137	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	92	220	0	ENST00000373344.5:c.2611T>C	p.Ser871Pro	p.S871P	ENST00000373344	NM_000489.3	871	Tca/Cca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653833	89653833	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077100-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	13	214	0	ENST00000371953.3:c.131G>T	p.Gly44Val	p.G44V	ENST00000371953	NM_000314.4	44	gGc/gTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692794	89692794	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121909238		P-0077100-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	19	183	0	ENST00000371953.3:c.278A>G	p.His93Arg	p.H93R	ENST00000371953	NM_000314.4	93	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0077100-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	141	417	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212439	5212439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150241840		P-0077100-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	122	400	0	ENST00000357368.4:c.4678G>A	p.Val1560Met	p.V1560M	ENST00000357368	NM_002850.3	1560	Gtg/Atg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467589	66467589	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772693559		P-0077100-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	93	331	1	ENST00000273854.3:c.680G>A	p.Arg227His	p.R227H	ENST00000273854	NM_004439.5	227	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175217	112175218	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0077100-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	109	328	0	ENST00000257430.4:c.3928_3929del	p.Lys1310AspfsTer4	p.K1310Dfs*4	ENST00000257430	NM_000038.5	1309	gAA/g																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372173	55372173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077100-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	25	405	2	ENST00000297316.4:c.863C>T	p.Ala288Val	p.A288V	ENST00000297316	NM_022454.3	288	gCg/gTg																																																																															
GAB2	9846	MSKCC	GRCh37	11	77991947	77991947	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0077100-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	23	333	0	ENST00000361507.4:c.76G>C	p.Ala26Pro	p.A26P	ENST00000361507	NM_080491.2	26	Gcc/Ccc																																																																															
ALK	238	MSKCC	GRCh37	2	29917860	29917860	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077100-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	19	284	0	ENST00000389048.3:c.808T>G	p.Phe270Val	p.F270V	ENST00000389048	NM_004304.4	270	Ttc/Gtc																																																																															
APC	324	MSKCC	GRCh37	5	112174314	112174314	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077100-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	101	358	0	ENST00000257430.4:c.3023del	p.Ile1008AsnfsTer14	p.I1008Nfs*14	ENST00000257430	NM_000038.5	1008	aTa/aa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457264	67457264	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750707381		P-0077103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	128	474	0	ENST00000327367.4:c.238C>T	p.Arg80Trp	p.R80W	ENST00000327367	NM_005902.3	80	Cgg/Tgg																																																																															
MED12	9968	MSKCC	GRCh37	X	70347223	70347223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	38	331	1	ENST00000374080.3:c.2887G>A	p.Asp963Asn	p.D963N	ENST00000374080		963	Gat/Aat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420526	49420526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764161037		P-0077103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	89	375	0	ENST00000301067.7:c.15223G>A	p.Gly5075Arg	p.G5075R	ENST00000301067	NM_003482.3	5075	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577564	7577565	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0077103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	92	293	0	ENST00000269305.4:c.716dup	p.Asn239LysfsTer25	p.N239Kfs*25	ENST00000269305	NM_001126112.2	239	aac/aaAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0077103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	56	234	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55270278	55270282	+	frameshift_variant	Frame_Shift_Del	DEL	GACTG	GACTG	A			P-0077103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	92	403	0	ENST00000275493.2:c.3231_3235delinsA	p.Thr1078ArgfsTer4	p.T1078Rfs*4	ENST00000275493	NM_005228.3	1077	ttGACTGag/ttAag																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0077116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	346	418	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0077116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			819	47	433	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912660		P-0077116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			722	124	462	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216437	36216437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			964	84	554	0	ENST00000222270.7:c.3700G>A	p.Glu1234Lys	p.E1234K	ENST00000222270	NM_014727.1	1234	Gag/Aag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515136	31515136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1025	61	375	0	ENST00000344624.3:c.1249C>T	p.His417Tyr	p.H417Y	ENST00000344624		417	Cat/Tat																																																																															
SYK	6850	MSKCC	GRCh37	9	93636963	93636963	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56071116		P-0077116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			736	102	514	0	ENST00000375746.1:c.1013G>A	p.Arg338Lys	p.R338K	ENST00000375746	NM_001174167.1	338	aGa/aAa																																																																															
MDM2	4193	MSKCC	GRCh37	12	69210629	69210629	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			740	147	268	0	ENST00000462284.1:c.212G>T	p.Arg71Leu	p.R71L	ENST00000462284	NM_002392.5	71	cGa/cTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151835909	151835909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			716	88	404	0	ENST00000262189.6:c.14615C>A	p.Ser4872Tyr	p.S4872Y	ENST00000262189	NM_170606.2	4872	tCc/tAc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918132	50918132	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148176230		P-0077116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			825	93	468	0	ENST00000440232.2:c.2449C>T	p.Arg817Trp	p.R817W	ENST00000440232	NM_002691.3	817	Cgg/Tgg																																																																															
CASP8	841	MSKCC	GRCh37	2	202149662	202149662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			833	181	503	0	ENST00000358485.4:c.1103G>A	p.Cys368Tyr	p.C368Y	ENST00000358485	NM_001080125.1	368	tGc/tAc																																																																															
TET2	54790	MSKCC	GRCh37	4	106157938	106157938	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			902	156	513	0	ENST00000380013.4:c.2839C>G	p.Gln947Glu	p.Q947E	ENST00000380013	NM_001127208.2	947	Caa/Gaa																																																																															
TET2	54790	MSKCC	GRCh37	4	106156816	106156816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			935	142	522	0	ENST00000380013.4:c.1717C>T	p.His573Tyr	p.H573Y	ENST00000380013	NM_001127208.2	573	Cac/Tac																																																																															
TERT	7015	MSKCC	GRCh37	5	1295620	1295620	+	upstream_gene_variant	5'Flank	SNP	G	G	C			P-0077116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1147	257	591	0				ENST00000310581	NM_198253.2																																																																																	
WHSC1	7468	MSKCC	GRCh37	4	1978319	1978319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			972	147	516	0	ENST00000382895.3:c.3739G>A	p.Asp1247Asn	p.D1247N	ENST00000382895	NM_133330.2	1247	Gat/Aat																																																																															
SYK	6850	MSKCC	GRCh37	9	93637016	93637016	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			756	103	515	0	ENST00000375746.1:c.1066G>C	p.Glu356Gln	p.E356Q	ENST00000375746	NM_001174167.1	356	Gag/Cag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15935615	15935615	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	96	408	0	ENST00000268712.3:c.7318G>C	p.Asp2440His	p.D2440H	ENST00000268712	NM_006311.3	2440	Gac/Cac																																																																															
NSD1	64324	MSKCC	GRCh37	5	176722387	176722387	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			828	165	471	0	ENST00000439151.2:c.8018C>G	p.Pro2673Arg	p.P2673R	ENST00000439151	NM_022455.4	2673	cCa/cGa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729162	66729162	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			885	107	475	0	ENST00000307102.5:c.370C>G	p.Pro124Ala	p.P124A	ENST00000307102	NM_002755.3	124	Ccg/Gcg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517822	187517822	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			833	153	463	0	ENST00000441802.2:c.12872C>G	p.Ser4291Cys	p.S4291C	ENST00000441802	NM_005245.3	4291	tCt/tGt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135779201	135779201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			857	49	435	0	ENST00000298552.3:c.2045C>T	p.Ser682Phe	p.S682F	ENST00000298552	NM_001162426.1	682	tCt/tTt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637351	176637351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765550140		P-0077116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			995	89	477	0	ENST00000439151.2:c.1951C>T	p.Pro651Ser	p.P651S	ENST00000439151	NM_022455.4	651	Ccc/Tcc																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733104	74733104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			850	101	483	0	ENST00000359995.5:c.139C>T	p.Arg47Trp	p.R47W	ENST00000359995	NM_001195427.1	47	Cgg/Tgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828186	72828186	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			970	148	514	0	ENST00000268489.5:c.8395C>G	p.Leu2799Val	p.L2799V	ENST00000268489	NM_006885.3	2799	Ctt/Gtt																																																																															
HGF	3082	MSKCC	GRCh37	7	81388032	81388032	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	52	274	0	ENST00000222390.5:c.343G>C	p.Glu115Gln	p.E115Q	ENST00000222390	NM_000601.4	115	Gaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0077125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	41	409	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435790	110435790	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1446914389		P-0077125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	37	390	0	ENST00000375856.3:c.2611C>T	p.Arg871Trp	p.R871W	ENST00000375856	NM_003749.2	871	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	31	226	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573586	48573597	+	inframe_deletion	In_Frame_Del	DEL	TAATAACAGCTA	TAATAACAGCTA	-			P-0077125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	61	344	0	ENST00000342988.3:c.173_184del	p.Ile58_Ile61del	p.I58_I61del	ENST00000342988	NM_005359.5	57	tTAATAACAGCTAta/tta																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971154	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0077125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	33	427	0	ENST00000304494.5:c.204_205del	p.Glu69AlafsTer50	p.E69Afs*50	ENST00000304494	NM_000077.4	68	gcGGag/gcag																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	74	369	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39742659	39742659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077129-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	61	393	0	ENST00000361337.2:c.1502C>T	p.Thr501Ile	p.T501I	ENST00000361337	NM_003286.2	501	aCt/aTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	166	293	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0077131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	115	552	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393384	139393384	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	93	498	0	ENST00000277541.6:c.6147G>C	p.Lys2049Asn	p.K2049N	ENST00000277541	NM_017617.3	2049	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0077132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	264	583	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112162804	112162804	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0077132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	113	268	0	ENST00000257430.4:c.1409-1G>A		p.X470_splice	ENST00000257430	NM_000038.5	470																																																																																
HLA-A	3105	MSKCC	GRCh37	6	29911310	29911314	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGC	GCAGC	-			P-0077132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	126	488	0	ENST00000376809.5:c.612_616del	p.Gln204HisfsTer15	p.Q204Hfs*15	ENST00000376809	NM_002116.7	203	ctGCAGCgc/ctgc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920448	114920449	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	A			P-0077132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	270	388	0	ENST00000543371.1:c.1390dup	p.Arg464LysfsTer13	p.R464Kfs*13	ENST00000543371	NM_001198531.1	463	-/A																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259040	89259040	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	59	336	0	ENST00000336596.2:c.184T>C	p.Tyr62His	p.Y62H	ENST00000336596	NM_005233.5	62	Tac/Cac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0077137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	121	199	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578412	7578412	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519747		P-0077137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	141	287	0	ENST00000269305.4:c.518T>G	p.Val173Gly	p.V173G	ENST00000269305	NM_001126112.2	173	gTg/gGg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45657055	45657060	+	inframe_deletion	In_Frame_Del	DEL	TCCACG	TCCACG	-			P-0077137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	57	203	0	ENST00000407780.3:c.96_101del	p.Asp32_Val33del	p.D32_V33del	ENST00000407780	NM_001283052.1	32	gaCGTGGAg/gag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0077149-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			362	67	287	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
APC	324	MSKCC	GRCh37	5	112175391	112175392	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0077149-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	111	349	0	ENST00000257430.4:c.4101_4102del	p.Gln1367HisfsTer7	p.Q1367Hfs*7	ENST00000257430	NM_000038.5	1367	cAG/c																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073636	8073637	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0077149-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			494	107	370	0	ENST00000377482.5:c.1022dup	p.Tyr341Ter	p.Y341*	ENST00000377482	NM_018948.3	341	tac/taAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2131677	2131683	+	frameshift_variant	Frame_Shift_Del	DEL	TGTCTAA	TGTCTAA	-			P-0077149-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			556	36	445	0	ENST00000219476.3:c.3692_3698del	p.Leu1231ProfsTer92	p.L1231Pfs*92	ENST00000219476	NM_000548.3	1231	cTGTCTAAc/cc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78422275	78422275	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs372038051		P-0077149-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	76	287	0	ENST00000370768.2:c.1687A>G	p.Thr563Ala	p.T563A	ENST00000370768	NM_003902.3	563	Act/Gct																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779866	3779866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077149-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	57	311	0	ENST00000262367.5:c.5182C>T	p.Leu1728Phe	p.L1728F	ENST00000262367	NM_004380.2	1728	Ctc/Ttc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21342314	21342314	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077149-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	82	315	0	ENST00000215739.8:c.416A>C	p.Asp139Ala	p.D139A	ENST00000215739	NM_006767.3	139	gAc/gCc																																																																															
SESN1	27244	MSKCC	GRCh37	6	109322689	109322689	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0077149-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	62	278	0	ENST00000436639.2:c.348C>G	p.Ile116Met	p.I116M	ENST00000436639	NM_014454.2	116	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0077150-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			526	96	522	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048225	180048225	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077150-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			498	87	476	0	ENST00000261937.6:c.2048A>G	p.Asn683Ser	p.N683S	ENST00000261937	NM_182925.4	683	aAc/aGc																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724604	112724604	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs777420751		P-0077150-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			432	77	360	0	ENST00000369452.4:c.488A>T	p.Asp163Val	p.D163V	ENST00000369452	NM_007373.3	163	gAc/gTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249007	+	missense_variant	Missense_Mutation	ONP	GCG	GCG	TCC			P-0077150-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			518	167	400	0	ENST00000275493.2:c.2303_2305delinsTCC	p.Ser768_Val769delinsIleLeu	p.S768_V769delinsIL	ENST00000275493	NM_005228.3	768	aGCGtg/aTCCtg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0077152-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			239	83	326	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557702	21557702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077152-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			260	59	428	0	ENST00000382592.4:c.2143G>A	p.Ala715Thr	p.A715T	ENST00000382592	NM_014572.2	715	Gcc/Acc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001292	150001292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077152-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			161	59	353	0	ENST00000253339.5:c.2312C>T	p.Ser771Leu	p.S771L	ENST00000253339		771	tCa/tTa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164421	47164422	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0077152-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			167	58	301	0	ENST00000409792.3:c.1704dup	p.Phe569IlefsTer2	p.F569Ifs*2	ENST00000409792	NM_014159.6	568	-/A																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439902	51439902	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077152-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			233	61	349	0	ENST00000262662.1:c.467T>A	p.Met156Lys	p.M156K	ENST00000262662		156	aTg/aAg																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0077157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	76	291	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0077157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	121	470	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0077157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	265	397	0	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579445	7579446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0077157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	426	725	1	ENST00000269305.4:c.241dup	p.Thr81AsnfsTer68	p.T81Nfs*68	ENST00000269305	NM_001126112.2	81	aca/aAca																																																																															
EED	8726	MSKCC	GRCh37	11	85967478	85967478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	172	385	0	ENST00000263360.6:c.476G>A	p.Ser159Asn	p.S159N	ENST00000263360	NM_003797.3	159	aGc/aAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376672	8376672	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	45	376	0	ENST00000356435.5:c.4441C>G	p.Gln1481Glu	p.Q1481E	ENST00000356435		1481	Caa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786202962		P-0077159-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	111	787	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0077212-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			420	224	392	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0077212-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			191	387	421	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
MGA	23269	MSKCC	GRCh37	15	42021440	42021440	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077212-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			230	536	427	0	ENST00000219905.7:c.3736C>T	p.Arg1246Ter	p.R1246*	ENST00000219905	NM_001164273.1	1246	Cga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465611	8465611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077212-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			547	194	444	0	ENST00000356435.5:c.3569del	p.Pro1190HisfsTer41	p.P1190Hfs*41	ENST00000356435		1190	cCa/ca																																																																															
JAK2	3717	MSKCC	GRCh37	9	5066739	5066739	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1340580425		P-0077214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	60	261	0	ENST00000381652.3:c.1276C>T	p.Arg426Ter	p.R426*	ENST00000381652	NM_004972.3	426	Cga/Tga																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936821	150936823	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	GCA	GCA	-			P-0077214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	233	404	0	ENST00000271640.5:c.3858_3860del	p.Cys1286_Arg1287delinsTer	p.C1286_R1287delins*	ENST00000271640	NM_001145415.1	1286	tGCAga/tga																																																																															
ATM	472	MSKCC	GRCh37	11	108173758	108173758	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0077214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	69	258	0	ENST00000278616.4:c.5496+2T>C		p.X1832_splice	ENST00000278616	NM_000051.3	1832																																																																																
ARHGAP35	2909	MSKCC	GRCh37	19	47422680	47422682	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0077214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	73	344	0	ENST00000404338.3:c.748_750del	p.Ser250del	p.S250del	ENST00000404338	NM_004491.4	250	AGT/-																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061098	38061098	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	78	400	0	ENST00000250448.2:c.891del	p.Ser298LeufsTer23	p.S298Lfs*23	ENST00000250448	NM_004496.3	297	ccC/cc																																																																															
FH	2271	MSKCC	GRCh37	1	241680520	241680520	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1277364872		P-0077216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	57	269	0	ENST00000366560.3:c.229A>G	p.Met77Val	p.M77V	ENST00000366560	NM_000143.3	77	Atg/Gtg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202714	128202722	+	inframe_deletion	In_Frame_Del	DEL	TGGGCTTGA	TGGGCTTGA	-			P-0077216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	103	403	0	ENST00000341105.2:c.998_1006del	p.Ile333_Pro335del	p.I333_P335del	ENST00000341105	NM_032638.4	333	aTCAAGCCCAag/aag																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0077224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	224	432	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	357	558	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013744	12013744	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0077224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	148	281	0	ENST00000353533.5:c.685+1G>A		p.X229_splice	ENST00000353533	NM_003010.3	229																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27087908	27087909	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0077224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	263	438	0	ENST00000324856.7:c.2195_2196del	p.Gln732LeufsTer84	p.Q732Lfs*84	ENST00000324856	NM_006015.4	732	cAG/c																																																																															
ATM	472	MSKCC	GRCh37	11	108139277	108139277	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	101	418	0	ENST00000278616.4:c.2779T>A	p.Leu927Met	p.L927M	ENST00000278616	NM_000051.3	927	Ttg/Atg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0077225-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	28	368	0				ENST00000310581	NM_198253.2																																																																																	
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0077225-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	124	269	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ATRX	546	MSKCC	GRCh37	X	76949318	76949318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077225-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	34	266	0	ENST00000373344.5:c.479G>T	p.Arg160Leu	p.R160L	ENST00000373344	NM_000489.3	160	cGc/cTc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176639088	176639088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077225-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	135	405	0	ENST00000439151.2:c.3688G>A	p.Ala1230Thr	p.A1230T	ENST00000439151	NM_022455.4	1230	Gct/Act																																																																															
ATR	545	MSKCC	GRCh37	3	142279154	142279154	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077225-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	133	292	0	ENST00000350721.4:c.1492C>T	p.Gln498Ter	p.Q498*	ENST00000350721	NM_001184.3	498	Caa/Taa																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14629086	14629086	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1367080747		P-0077225-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	62	318	0	ENST00000254322.2:c.76C>T	p.Arg26Cys	p.R26C	ENST00000254322	NM_006145.1	26	Cgc/Tgc																																																																															
EP300	2033	MSKCC	GRCh37	22	41572494	41572494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077225-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	79	489	0	ENST00000263253.7:c.5023C>G	p.His1675Asp	p.H1675D	ENST00000263253	NM_001429.3	1675	Cac/Gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0077226-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	399	718	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575219	48575219	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0077226-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	170	330	0	ENST00000342988.3:c.413C>G	p.Ser138Ter	p.S138*	ENST00000342988	NM_005359.5	138	tCa/tGa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425895	49425895	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750441480		P-0077226-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	200	736	0	ENST00000301067.7:c.12593G>A	p.Arg4198Gln	p.R4198Q	ENST00000301067	NM_003482.3	4198	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077226-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	189	329	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650870	37650870	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0077226-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	318	475	0	ENST00000447079.4:c.2342T>A	p.Leu781Ter	p.L781*	ENST00000447079	NM_015083.1	781	tTa/tAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435780	49435908	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCAGAGAGAGTGAGTCAGAGAAGACTTGGCAGGCGACTCCTCCACCTGCCATGTTGCCAGGCTGTCTCCCTTGCCCTCATCCCACAGGTACCTGGGTAGTCTTGCTTGAGATTAGGAAAATTAATGTT	GGCAGAGAGAGTGAGTCAGAGAAGACTTGGCAGGCGACTCCTCCACCTGCCATGTTGCCAGGCTGTCTCCCTTGCCCTCATCCCACAGGTACCTGGGTAGTCTTGCTTGAGATTAGGAAAATTAATGTT	-			P-0077226-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	169	653	0	ENST00000301067.7:c.6073_6110-7del		p.X2025_splice	ENST00000301067	NM_003482.3	2025																																																																																
INPP4A	3631	MSKCC	GRCh37	2	99136518	99136518	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs865939829		P-0077226-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	258	482	0	ENST00000074304.5:c.7G>A	p.Ala3Thr	p.A3T	ENST00000074304	NM_001134224.1	3	Gca/Aca																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458314	120458320	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGGAA	TCTGGAA	-			P-0077226-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	402	810	0	ENST00000256646.2:c.7025_7031del	p.Ile2342LysfsTer14	p.I2342Kfs*14	ENST00000256646	NM_024408.3	2342	aTTCCAGAa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs863223300		P-0077228-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	685	623	0	ENST00000269305.4:c.532del	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602413	10602413	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077228-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	406	595	0	ENST00000171111.5:c.1165G>T	p.Asp389Tyr	p.D389Y	ENST00000171111	NM_203500.1	389	Gac/Tac																																																																															
STK11	6794	MSKCC	GRCh37	19	1219381	1219381	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077228-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	323	405	0	ENST00000326873.7:c.433G>T	p.Glu145Ter	p.E145*	ENST00000326873	NM_000455.4	145	Gag/Tag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239876	53239876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	203	565	0	ENST00000375401.3:c.1565C>T	p.Ser522Phe	p.S522F	ENST00000375401	NM_004187.3	522	tCc/tTc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104309740	104309740	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	152	413	0	ENST00000369902.3:c.331G>C	p.Asp111His	p.D111H	ENST00000369902	NM_016169.3	111	Gat/Cat																																																																															
SMO	6608	MSKCC	GRCh37	7	128850828	128850828	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	126	452	0	ENST00000249373.3:c.1675G>C	p.Glu559Gln	p.E559Q	ENST00000249373	NM_005631.4	559	Gag/Cag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32899323	32899323	+	splice_donor_variant	Splice_Site	SNP	T	T	C	rs876661045		P-0077230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	154	254	0	ENST00000380152.3:c.425+2T>C		p.X142_splice	ENST00000380152		142																																																																																
ATM	472	MSKCC	GRCh37	11	108236085	108236085	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	158	579	0	ENST00000278616.4:c.9021A>T	p.Glu3007Asp	p.E3007D	ENST00000278616	NM_000051.3	3007	gaA/gaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0077231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	145	327	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5081757	5081757	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1370354879		P-0077231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	77	431	0	ENST00000381652.3:c.2467C>G	p.Pro823Ala	p.P823A	ENST00000381652	NM_004972.3	823	Cca/Gca																																																																															
PPARG	5468	MSKCC	GRCh37	3	12421272	12421272	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	53	590	0	ENST00000287820.6:c.152C>G	p.Ser51Cys	p.S51C	ENST00000287820	NM_015869.4	51	tCc/tGc																																																																															
SMO	6608	MSKCC	GRCh37	7	128829183	128829183	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	106	498	0	ENST00000249373.3:c.191G>T	p.Cys64Phe	p.C64F	ENST00000249373	NM_005631.4	64	tGc/tTc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81574750	81574750	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	44	528	0	ENST00000298171.2:c.646A>C	p.Ile216Leu	p.I216L	ENST00000298171	NM_000369.2	216	Att/Ctt																																																																															
BTK	695	MSKCC	GRCh37	X	100612525	100612525	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	46	259	0	ENST00000308731.7:c.1149T>A	p.Asn383Lys	p.N383K	ENST00000308731	NM_000061.2	383	aaT/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0077256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	269	678	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827886	40827886	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201911869		P-0077256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	353	498	0	ENST00000373198.4:c.2542G>A	p.Gly848Arg	p.G848R	ENST00000373198	NM_133170.3	848	Gga/Aga																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563204	21563204	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769991034		P-0077256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			887	71	731	2	ENST00000382592.4:c.715G>A	p.Val239Ile	p.V239I	ENST00000382592	NM_014572.2	239	Gta/Ata																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348200	89348200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	242	587	0	ENST00000301030.4:c.4750G>A	p.Glu1584Lys	p.E1584K	ENST00000301030	NM_001256183.1	1584	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0077256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	227	309	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280813	41280813	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	211	558	0	ENST00000349496.5:c.2326T>A	p.Trp776Arg	p.W776R	ENST00000349496	NM_001904.3	776	Tgg/Agg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACCCCC			P-0077257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1286	2919	521	0	ENST00000275493.2:c.2311_2319dup	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	gac/gACAACCCCCac																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	111	437	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs786201838		P-0077257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			762	31	637	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244642	41244642	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs886040085		P-0077257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	118	447	0	ENST00000357654.3:c.2906del	p.Asn969IlefsTer31	p.N969Ifs*31	ENST00000357654	NM_007294.3	969	aAt/at																																																																															
APC	324	MSKCC	GRCh37	5	112174365	112174365	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	113	406	0	ENST00000257430.4:c.3074T>C	p.Ile1025Thr	p.I1025T	ENST00000257430	NM_000038.5	1025	aTa/aCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0077261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	30	373	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
AURKA	6790	MSKCC	GRCh37	20	54956619	54956620	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0077261-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	40	343	0	ENST00000312783.6:c.574_575del	p.Asn192TyrfsTer3	p.N192Yfs*3	ENST00000312783	NM_198436.1	192	AAt/t																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258284	16258284	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	172	545	0	ENST00000375759.3:c.5553del	p.Lys1851AsnfsTer18	p.K1851Nfs*18	ENST00000375759	NM_015001.2	1850	gAa/ga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023376	27023376	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1427038078		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	37	312	0	ENST00000324856.7:c.482T>C	p.Val161Ala	p.V161A	ENST00000324856	NM_006015.4	161	gTc/gCc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074255	8074255	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	117	524	0	ENST00000377482.5:c.404del	p.Asn135ThrfsTer40	p.N135Tfs*40	ENST00000377482	NM_018948.3	135	aAc/ac																																																																															
CTR9	9646	MSKCC	GRCh37	11	10796810	10796811	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	95	376	0	ENST00000361367.2:c.2949dup	p.Arg984ThrfsTer35	p.R984Tfs*35	ENST00000361367	NM_014633.3	981	cca/ccAa																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	45	306	2	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121435351	121435351	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762446965		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	103	558	0	ENST00000257555.6:c.1384G>A	p.Val462Ile	p.V462I	ENST00000257555		462	Gtc/Atc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	31	221	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	31	219	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	139	509	6	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	90	423	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95557552	95557552	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1447120867		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	117	384	0	ENST00000343455.3:c.5515C>T	p.Arg1839Trp	p.R1839W	ENST00000343455	NM_177438.2	1839	Cgg/Tgg																																																																															
USP8	9101	MSKCC	GRCh37	15	50782604	50782604	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs78727795		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	125	426	0	ENST00000307179.4:c.2116C>T	p.Arg706Trp	p.R706W	ENST00000307179		706	Cgg/Tgg																																																																															
CD276	80381	MSKCC	GRCh37	15	73994829	73994829	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751833994		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	53	203	0	ENST00000318443.5:c.313G>A	p.Ala105Thr	p.A105T	ENST00000318443	NM_001024736.1	105	Gca/Aca																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349278	11349278	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	103	499	0	ENST00000332029.2:c.58del	p.Arg20AspfsTer65	p.R20Dfs*65	ENST00000332029	NM_003745.1	20	Cga/ga																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354314	354314	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368340732		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	103	366	0	ENST00000262320.3:c.1244G>A	p.Arg415His	p.R415H	ENST00000262320	NM_003502.3	415	cGc/cAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	129	486	1	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																															
CDH1	999	MSKCC	GRCh37	16	68842463	68842463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	80	429	0	ENST00000261769.5:c.524T>C	p.Leu175Pro	p.L175P	ENST00000261769	NM_004360.3	175	cTg/cCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	125	579	2	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350861	89350862	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	100	353	0	ENST00000301030.4:c.2088dup	p.Glu697ArgfsTer5	p.E697Rfs*5	ENST00000301030	NM_001256183.1	696	-/A																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	144	604	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59821793	59821793	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	46	266	0	ENST00000259008.2:c.2257G>T	p.Asp753Tyr	p.D753Y	ENST00000259008	NM_032043.2	753	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	42	429	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			661	18	524	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78897406	78897406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754209706		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	121	611	0	ENST00000306801.3:c.2741C>T	p.Ala914Val	p.A914V	ENST00000306801	NM_020761.2	914	gCg/gTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220679	1220679	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781638		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	98	493	0	ENST00000326873.7:c.697G>A	p.Gly233Ser	p.G233S	ENST00000326873	NM_000455.4	233	Ggc/Agc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615697	1615698	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs757261438		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	136	615	1	ENST00000344749.5:c.1573dup	p.Arg525ProfsTer28	p.R525Pfs*28	ENST00000344749	NM_001136139.2	525	cgg/cCgg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1620978	1620979	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	119	639	0	ENST00000344749.5:c.1081dup	p.Gln361ProfsTer32	p.Q361Pfs*32	ENST00000344749	NM_001136139.2	361	cag/cCag																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256768	19256769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1202792889		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	55	489	0	ENST00000162023.5:c.944dup	p.Val316SerfsTer6	p.V316Sfs*6	ENST00000162023		315	cca/ccCa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211183	36211183	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	111	505	2	ENST00000222270.7:c.939del	p.Val314Ter	p.V314*	ENST00000222270	NM_014727.1	312	Aaa/aa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221297	36221297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	119	517	0	ENST00000222270.7:c.5131G>A	p.Glu1711Lys	p.E1711K	ENST00000222270	NM_014727.1	1711	Gag/Aag																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424741	47424741	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	38	438	0	ENST00000404338.3:c.2814del	p.Phe938LeufsTer10	p.F938Lfs*10	ENST00000404338	NM_004491.4	937	Ttt/tt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905566	50905566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	141	645	0	ENST00000440232.2:c.694C>A	p.Arg232Ser	p.R232S	ENST00000440232	NM_002691.3	232	Cgt/Agt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39224510	39224510	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	72	300	0	ENST00000402219.2:c.2848del	p.Arg950AspfsTer7	p.R950Dfs*7	ENST00000402219	NM_005633.3	950	Aga/ga																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384650	31384651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756395138		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	40	519	0	ENST00000328111.2:c.1359dup	p.Leu454AlafsTer11	p.L454Afs*11	ENST00000328111	NM_006892.3	451	gag/gaGg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713414	40713414	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	204	559	0	ENST00000373198.4:c.4101del	p.Ser1368ProfsTer31	p.S1368Pfs*31	ENST00000373198	NM_133170.3	1367	ccC/cc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	62	405	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
RAF1	5894	MSKCC	GRCh37	3	12641238	12641238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	101	347	0	ENST00000251849.4:c.1060C>T	p.Arg354Trp	p.R354W	ENST00000251849	NM_002880.3	354	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928073	178928073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	83	366	0	ENST00000263967.3:c.1351G>A	p.Gly451Arg	p.G451R	ENST00000263967	NM_006218.2	451	Gga/Aga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	80	352	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	225	413	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49935635	49935635	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	129	441	0	ENST00000296474.3:c.1729del	p.His577ThrfsTer5	p.H577Tfs*5	ENST00000296474	NM_002447.2	577	Cac/ac																																																																															
TET2	54790	MSKCC	GRCh37	4	106157741	106157741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	109	370	0	ENST00000380013.4:c.2642G>T	p.Arg881Met	p.R881M	ENST00000380013	NM_001127208.2	881	aGg/aTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286238	66286238	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	65	328	0	ENST00000273854.3:c.1448del	p.Asn483ThrfsTer18	p.N483Tfs*18	ENST00000273854	NM_004439.5	483	aAc/ac																																																																															
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	150	416	0	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755669	57755670	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1279983695		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	99	478	0	ENST00000274289.3:c.117dup	p.Glu40ArgfsTer66	p.E40Rfs*66	ENST00000274289	NM_006622.3	39	-/C																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005298	150005298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	89	548	1	ENST00000253339.5:c.927del	p.Met310Ter	p.M310*	ENST00000253339		309	ccC/cc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099283	157099283	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	42	440	0	ENST00000346085.5:c.220G>T	p.Glu74Ter	p.E74*	ENST00000346085	NM_020732.3	74	Gaa/Taa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099579	157099579	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	80	397	0	ENST00000346085.5:c.521del	p.Pro174ArgfsTer6	p.P174Rfs*6	ENST00000346085	NM_020732.3	172	gaC/ga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	129	514	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992720	68992721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs774202059		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	92	389	6	ENST00000288368.4:c.1693dup	p.Ser565PhefsTer3	p.S565Ffs*3	ENST00000288368	NM_024870.2	562	cgt/cgTt																																																																															
NBN	4683	MSKCC	GRCh37	8	90995032	90995032	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	26	319	0	ENST00000265433.3:c.89del	p.Asn30ThrfsTer5	p.N30Tfs*5	ENST00000265433	NM_002485.4	30	aAc/ac																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894974	101894974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745324433		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	84	342	0	ENST00000374994.4:c.527C>T	p.Thr176Met	p.T176M	ENST00000374994	NM_004612.2	176	aCg/aTg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900244	101900246	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	101	383	0	ENST00000374994.4:c.683_685del	p.Glu228del	p.E228del	ENST00000374994	NM_004612.2	226	ggAGAa/gga																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98268793	98268793	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	81	460	2	ENST00000331920.6:c.290del	p.Asn97ThrfsTer20	p.N97Tfs*20	ENST00000331920	NM_000264.3	97	aAc/ac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938488	44938488	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	71	320	0	ENST00000377967.4:c.3036G>A	p.Trp1012Ter	p.W1012*	ENST00000377967	NM_021140.2	1012	tgG/tgA																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226066	53226066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	104	507	1	ENST00000375401.3:c.2783C>T	p.Ala928Val	p.A928V	ENST00000375401	NM_004187.3	928	gCg/gTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53247024	53247024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	123	460	0	ENST00000375401.3:c.476G>A	p.Arg159His	p.R159H	ENST00000375401	NM_004187.3	159	cGc/cAc																																																																															
AR	367	MSKCC	GRCh37	X	66766237	66766237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	81	437	0	ENST00000374690.3:c.1249G>A	p.Ala417Thr	p.A417T	ENST00000374690	NM_000044.3	417	Gcg/Acg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11217217	11217217	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	86	463	0	ENST00000361445.4:c.4461G>T	p.Leu1487Phe	p.L1487F	ENST00000361445	NM_004958.3	1487	ttG/ttT																																																																															
MTOR	2475	MSKCC	GRCh37	1	11270963	11270963	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	89	316	0	ENST00000361445.4:c.3562T>C	p.Tyr1188His	p.Y1188H	ENST00000361445	NM_004958.3	1188	Tac/Cac																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150933353	150933354	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	135	578	0	ENST00000271640.5:c.2819_2820del	p.Ser940Ter	p.S940*	ENST00000271640	NM_001145415.1	939	CTc/c																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981499	201981499	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	101	446	0	ENST00000359651.3:c.413G>A	p.Trp138Ter	p.W138*	ENST00000359651		138	tGg/tAg																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518529	204518529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	126	470	0	ENST00000367182.3:c.1192G>A	p.Ala398Thr	p.A398T	ENST00000367182	NM_001278516.1	398	Gct/Act																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106412	27106412	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	128	491	0	ENST00000324856.7:c.6023T>C	p.Leu2008Pro	p.L2008P	ENST00000324856	NM_006015.4	2008	cTg/cCg																																																																															
CTR9	9646	MSKCC	GRCh37	11	10791758	10791758	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	108	311	0	ENST00000361367.2:c.2111A>G	p.Tyr704Cys	p.Y704C	ENST00000361367	NM_014633.3	704	tAt/tGt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741732	17741732	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	25	420	0	ENST00000250003.3:c.403T>C	p.Cys135Arg	p.C135R	ENST00000250003	NM_002478.4	135	Tgc/Cgc																																																																															
IGF2	3481	MSKCC	GRCh37	11	2161414	2161414	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	136	425	0	ENST00000434045.2:c.113G>T	p.Gly38Val	p.G38V	ENST00000434045	NM_001127598.1	38	gGc/gTc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133854	41133854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	82	449	0	ENST00000379561.5:c.1774C>A	p.Leu592Ile	p.L592I	ENST00000379561	NM_002015.3	592	Ctt/Att																																																																															
SCG5	6447	MSKCC	GRCh37	15	32972108	32972108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	108	373	0	ENST00000300175.4:c.368G>A	p.Gly123Glu	p.G123E	ENST00000300175	NM_001144757.1	123	gGa/gAa																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675512	40675512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	98	357	0	ENST00000249776.8:c.293G>A	p.Gly98Asp	p.G98D	ENST00000249776	NM_033286.3	98	gGc/gAc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799272	88799272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	111	413	0	ENST00000360948.2:c.113G>A	p.Cys38Tyr	p.C38Y	ENST00000360948	NM_001012338.2	38	tGc/tAc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99440131	99440131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	123	321	0	ENST00000268035.6:c.1099G>A	p.Gly367Arg	p.G367R	ENST00000268035	NM_000875.3	367	Ggg/Agg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2122968	2122968	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	130	459	0	ENST00000219476.3:c.2339T>C	p.Leu780Pro	p.L780P	ENST00000219476	NM_000548.3	780	cTg/cCg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129428	2129428	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	109	415	0	ENST00000219476.3:c.3283A>G	p.Ser1095Gly	p.S1095G	ENST00000219476	NM_000548.3	1095	Agc/Ggc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30133193	30133193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	118	472	0	ENST00000263025.4:c.305G>A	p.Gly102Asp	p.G102D	ENST00000263025	NM_002746.2	102	gGc/gAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68846168	68846168	+	splice_donor_variant	Splice_Site	SNP	T	T	C	rs786202817		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	39	361	0	ENST00000261769.5:c.1137+2T>C		p.X379_splice	ENST00000261769	NM_004360.3	379																																																																																
FLCN	201163	MSKCC	GRCh37	17	17119805	17119805	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752006809		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	88	446	0	ENST00000285071.4:c.1189G>A	p.Val397Met	p.V397M	ENST00000285071	NM_144997.5	397	Gtg/Atg																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38785153	38785153	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	117	408	0	ENST00000348513.6:c.1120del	p.Val374SerfsTer68	p.V374Sfs*68	ENST00000348513	NM_003079.4	374	Gtc/tc																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38788565	38788565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	128	360	0	ENST00000348513.6:c.596A>G	p.Asn199Ser	p.N199S	ENST00000348513	NM_003079.4	199	aAc/aGc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40879654	40879654	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	106	318	0	ENST00000428826.2:c.245del	p.Lys82SerfsTer4	p.K82Sfs*4	ENST00000428826		82	aAg/ag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47700096	47700096	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	117	377	0	ENST00000347630.2:c.77A>C	p.Gln26Pro	p.Q26P	ENST00000347630	NM_001007230.1	26	cAg/cCg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302316	15302317	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	106	461	0	ENST00000263388.2:c.954_955del	p.Ala319HisfsTer12	p.A319Hfs*12	ENST00000263388	NM_000435.2	318	tgTGcc/tgcc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349776	15349776	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	87	471	0	ENST00000263377.2:c.3798G>T	p.Glu1266Asp	p.E1266D	ENST00000263377	NM_058243.2	1266	gaG/gaT																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422812	47422812	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	101	415	1	ENST00000404338.3:c.880A>G	p.Ser294Gly	p.S294G	ENST00000404338	NM_004491.4	294	Agt/Ggt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912043	50912043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	114	456	0	ENST00000440232.2:c.1777T>C	p.Tyr593His	p.Y593H	ENST00000440232	NM_002691.3	593	Tac/Cac																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21348283	21348283	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376046310		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	115	568	0	ENST00000215739.8:c.1424C>T	p.Thr475Met	p.T475M	ENST00000215739	NM_006767.3	475	aCg/aTg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458458	12458458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	143	450	0	ENST00000287820.6:c.1075G>A	p.Ala359Thr	p.A359T	ENST00000287820	NM_015869.4	359	Gcc/Acc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170015179	170015179	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G	rs781306402		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	41	289	0	ENST00000295797.4:c.1585A>G	p.Met529Val	p.M529V	ENST00000295797	NM_002740.5	529	Atg/Gtg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185190906	185190906	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	154	507	0	ENST00000265026.3:c.1787G>T	p.Arg596Ile	p.R596I	ENST00000265026	NM_004721.4	596	aGa/aTa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47061309	47061309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	101	408	0	ENST00000409792.3:c.7372G>A	p.Ala2458Thr	p.A2458T	ENST00000409792	NM_014159.6	2458	Gca/Aca																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524317	176524317	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1375097850		P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	123	486	1	ENST00000292408.4:c.2178G>A	p.Trp726Ter	p.W726*	ENST00000292408	NM_213647.1	726	tgG/tgA																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56171034	56171034	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	38	448	0	ENST00000399503.3:c.1862G>A	p.Gly621Glu	p.G621E	ENST00000399503	NM_005921.1	621	gGg/gAg																																																																															
MSH3	4437	MSKCC	GRCh37	5	80040404	80040404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	27	277	0	ENST00000265081.6:c.1733A>G	p.Lys578Arg	p.K578R	ENST00000265081	NM_002439.4	578	aAg/aGg																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032071	26032071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	186	582	0	ENST00000244661.2:c.218G>A	p.Arg73Gln	p.R73Q	ENST00000244661	NM_003537.3	73	cGa/cAa																																																																															
IRF4	3662	MSKCC	GRCh37	6	397132	397132	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	104	489	0	ENST00000380956.4:c.520del	p.Leu174SerfsTer23	p.L174Sfs*23	ENST00000380956	NM_001195286.1	173	Ccc/cc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979295	93979296	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	73	411	0	ENST00000369303.4:c.1532_1533del	p.Tyr511CysfsTer20	p.Y511Cfs*20	ENST00000369303	NM_004440.3	511	tAT/t																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508454	106508454	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	77	429	0	ENST00000359195.3:c.448T>C	p.Phe150Leu	p.F150L	ENST00000359195	NM_002649.2	150	Ttc/Ctc																																																																															
HGF	3082	MSKCC	GRCh37	7	81374317	81374317	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	70	252	0	ENST00000222390.5:c.745del	p.Arg249AspfsTer45	p.R249Dfs*45	ENST00000222390	NM_000601.4	249	Aga/ga																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742060	145742060	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	122	528	0	ENST00000428558.2:c.443T>A	p.Val148Asp	p.V148D	ENST00000428558	NM_004260.3	148	gTc/gAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922965	39922965	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	50	439	0	ENST00000378444.4:c.3743A>G	p.Gln1248Arg	p.Q1248R	ENST00000378444	NM_001123385.1	1248	cAg/cGg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412620	63412620	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	89	459	0	ENST00000330258.3:c.547A>G	p.Lys183Glu	p.K183E	ENST00000330258	NM_152424.3	183	Aag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	92	533	2	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213923	66213923	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	30	289	0	ENST00000273854.3:c.2509-2A>T		p.X837_splice	ENST00000273854	NM_004439.5	837																																																																																
RAD51B	5890	MSKCC	GRCh37	14	68353847	68353847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	27	312	0	ENST00000487270.1:c.682C>T	p.Leu228Phe	p.L228F	ENST00000487270	NM_133509.3	228	Ctc/Ttc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971156	21971156	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	65	504	0	ENST00000304494.5:c.202G>C	p.Ala68Pro	p.A68P	ENST00000304494	NM_000077.4	68	Gcg/Ccg																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813409	102813409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	43	387	0	ENST00000307046.8:c.280G>A	p.Glu94Lys	p.E94K	ENST00000307046	NM_001111285.1	94	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099427	27099427	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	21	439	0	ENST00000324856.7:c.3664G>T	p.Gly1222Trp	p.G1222W	ENST00000324856	NM_006015.4	1222	Ggg/Tgg																																																																															
EED	8726	MSKCC	GRCh37	11	85963281	85963281	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	26	205	0	ENST00000263360.6:c.359G>A	p.Arg120Lys	p.R120K	ENST00000263360	NM_003797.3	120	aGa/aAa																																																																															
CRKL	1399	MSKCC	GRCh37	22	21304110	21304110	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	22	325	0	ENST00000354336.3:c.889C>G	p.Gln297Glu	p.Q297E	ENST00000354336	NM_005207.3	297	Caa/Gaa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097624	11097625	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1165714406		P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	66	471	1	ENST00000344626.4:c.810dup	p.Gly271ArgfsTer16	p.G271Rfs*16	ENST00000344626	NM_003072.3	268	-/C																																																																															
APLNR	187	MSKCC	GRCh37	11	57004166	57004166	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	T	T	A			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	32	470	0	ENST00000257254.3:c.313A>T	p.Ser105Cys	p.S105C	ENST00000257254		105	Agc/Tgc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528578	89528578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	36	287	0	ENST00000336596.2:c.2878G>T	p.Gly960Trp	p.G960W	ENST00000336596	NM_005233.5	960	Ggg/Tgg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244316	41244317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	21	336	0	ENST00000357654.3:c.3231dup	p.Pro1078AlafsTer8	p.P1078Afs*8	ENST00000357654	NM_007294.3	1077	-/G																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455164	50455164	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	24	352	0	ENST00000331340.3:c.713del	p.Pro238GlnfsTer19	p.P238Qfs*19	ENST00000331340	NM_006060.4	237	taC/ta																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498433	89498433	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs369423490		P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	11	348	0	ENST00000336596.2:c.2405C>G	p.Thr802Arg	p.T802R	ENST00000336596	NM_005233.5	802	aCg/aGg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36209041	36209041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	23	351	0	ENST00000222270.7:c.121G>A	p.Glu41Lys	p.E41K	ENST00000222270	NM_014727.1	41	Gaa/Aaa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367251	50367251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	21	381	0	ENST00000331340.3:c.58G>T	p.Val20Leu	p.V20L	ENST00000331340	NM_006060.4	20	Gta/Tta																																																																															
INSR	3643	MSKCC	GRCh37	19	7142840	7142840	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	34	375	0	ENST00000302850.5:c.2529G>C	p.Arg843Ser	p.R843S	ENST00000302850	NM_000208.2	843	agG/agC																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40727146	40727146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	97	454	0	ENST00000373198.4:c.3818C>A	p.Pro1273His	p.P1273H	ENST00000373198	NM_133170.3	1273	cCc/cAc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28623576	28623576	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	61	307	0	ENST00000241453.7:c.981C>A	p.Tyr327Ter	p.Y327*	ENST00000241453	NM_004119.2	327	taC/taA																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514865	103514865	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	103	425	0	ENST00000355739.4:c.1366G>T	p.Glu456Ter	p.E456*	ENST00000355739	NM_000123.3	456	Gag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521662	89521662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	50	340	0	ENST00000336596.2:c.2739C>A	p.Phe913Leu	p.F913L	ENST00000336596	NM_005233.5	913	ttC/ttA																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125514441	125514441	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	31	253	1	ENST00000428830.2:c.1136G>T	p.Arg379Leu	p.R379L	ENST00000428830	NM_001114121.2	379	cGa/cTa																																																																															
FH	2271	MSKCC	GRCh37	1	241661271	241661271	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	36	226	0	ENST00000366560.3:c.1391-1G>T		p.X464_splice	ENST00000366560	NM_000143.3	464																																																																																
SH2B3	10019	MSKCC	GRCh37	12	111856162	111856162	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762505252		P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	26	457	0	ENST00000341259.2:c.213C>A	p.Phe71Leu	p.F71L	ENST00000341259	NM_005475.2	71	ttC/ttA																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046448	30046448	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	33	308	0	ENST00000331968.5:c.2735T>A	p.Leu912His	p.L912H	ENST00000331968	NM_002742.2	912	cTc/cAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402798	139402798	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778566		P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	66	441	0	ENST00000277541.6:c.3211G>T	p.Gly1071Cys	p.G1071C	ENST00000277541	NM_017617.3	1071	Ggc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435221	49435222	+	missense_variant	Missense_Mutation	DNP	CC	CC	GA			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	39	400	0	ENST00000301067.7:c.6331_6332delinsTC	p.Gly2111Ser	p.G2111S	ENST00000301067	NM_003482.3	2111	GGg/TCg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78704387	78704387	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	30	356	0	ENST00000306801.3:c.535A>T	p.Ile179Leu	p.I179L	ENST00000306801	NM_020761.2	179	Ata/Tta																																																																															
FANCA	2175	MSKCC	GRCh37	16	89818608	89818608	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778844052		P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	16	340	0	ENST00000389301.3:c.3004G>A	p.Glu1002Lys	p.E1002K	ENST00000389301	NM_000135.2	1002	Gaa/Aaa																																																																															
KLF5	688	MSKCC	GRCh37	13	73636078	73636078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	29	339	0	ENST00000377687.4:c.341G>A	p.Arg114Gln	p.R114Q	ENST00000377687	NM_001730.3	114	cGa/cAa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106079	8106079	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	24	384	0	ENST00000346208.3:c.899T>A	p.Leu300His	p.L300H	ENST00000346208		300	cTc/cAc																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61325746	61325746	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			62	14	125	0	ENST00000283752.5:c.469+1G>A		p.X157_splice	ENST00000283752	NM_006919.2	157																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31019187	31019187	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	86	369	0	ENST00000375687.4:c.782A>G	p.Asn261Ser	p.N261S	ENST00000375687	NM_015338.5	261	aAc/aGc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962909	2962909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	26	369	0	ENST00000396946.4:c.1999C>A	p.Gln667Lys	p.Q667K	ENST00000396946	NM_032415.4	667	Cag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541874	187541874	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	30	429	0	ENST00000441802.2:c.5866G>T	p.Asp1956Tyr	p.D1956Y	ENST00000441802	NM_005245.3	1956	Gat/Tat																																																																															
RB1	5925	MSKCC	GRCh37	13	48919218	48919218	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	26	185	0	ENST00000267163.4:c.383T>A	p.Val128Asp	p.V128D	ENST00000267163	NM_000321.2	128	gTc/gAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410051	63410051	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			107	38	250	0	ENST00000330258.3:c.3116A>C	p.Gln1039Pro	p.Q1039P	ENST00000330258	NM_152424.3	1039	cAg/cCg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23632775	23632775	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	43	288	0	ENST00000261584.4:c.3021G>C	p.Met1007Ile	p.M1007I	ENST00000261584	NM_024675.3	1007	atG/atC																																																																															
CUL3	8452	MSKCC	GRCh37	2	225339030	225339031	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	A			P-0077271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	51	273	0	ENST00000264414.4:c.2238_2239delinsT	p.Glu746AspfsTer22	p.E746Dfs*22	ENST00000264414	NM_003590.4	746	gaAGga/gaTga																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849068	156849068	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	58	489	0	ENST00000524377.1:c.1960C>A	p.Arg654Ser	p.R654S	ENST00000524377	NM_002529.3	654	Cgc/Agc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72163772	72163772	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	50	325	0	ENST00000357731.5:c.586G>T	p.Asp196Tyr	p.D196Y	ENST00000357731	NM_173808.2	196	Gac/Tac																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640791	3640791	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	108	553	0	ENST00000294008.3:c.2848G>C	p.Glu950Gln	p.E950Q	ENST00000294008	NM_032444.2	950	Gag/Cag																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475064	40475064	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1064794899		P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	47	451	0	ENST00000264657.5:c.1846G>C	p.Glu616Gln	p.E616Q	ENST00000264657	NM_139276.2	616	Gaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	211	606	0	ENST00000269305.4:c.569del	p.Pro190LeufsTer57	p.P190Lfs*57	ENST00000269305	NM_001126112.2	190	cCt/ct																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597495	10597495	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	86	317	0	ENST00000171111.5:c.1709-1G>A		p.X570_splice	ENST00000171111	NM_203500.1	570																																																																																
CEBPA	1050	MSKCC	GRCh37	19	33792453	33792453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	79	405	0	ENST00000498907.2:c.868G>A	p.Glu290Lys	p.E290K	ENST00000498907	NM_004364.3	290	Gag/Aag																																																																															
AXL	558	MSKCC	GRCh37	19	41726666	41726666	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778883675		P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	31	446	0	ENST00000301178.4:c.211C>T	p.Arg71Trp	p.R71W	ENST00000301178	NM_021913.4	71	Cgg/Tgg																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260247	149260247	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs753225952		P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	54	443	0	ENST00000360632.3:c.646G>T	p.Ala216Ser	p.A216S	ENST00000360632	NM_015472.4	216	Gca/Tca																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259329	89259329	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1342457962		P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	494	419	0	ENST00000336596.2:c.473G>A	p.Gly158Glu	p.G158E	ENST00000336596	NM_005233.5	158	gGg/gAg																																																																															
KDR	3791	MSKCC	GRCh37	4	55964400	55964400	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149212892		P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	43	400	0	ENST00000263923.4:c.2413G>A	p.Val805Ile	p.V805I	ENST00000263923	NM_002253.2	805	Gtc/Atc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502262	157502262	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	75	503	0	ENST00000346085.5:c.3295G>T	p.Asp1099Tyr	p.D1099Y	ENST00000346085	NM_020732.3	1099	Gac/Tac																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	124	306	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254968	16254968	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	100	459	0	ENST00000375759.3:c.2233G>C	p.Glu745Gln	p.E745Q	ENST00000375759	NM_015001.2	745	Gag/Cag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740194	162740194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	63	401	0	ENST00000367921.3:c.1396G>T	p.Gly466Trp	p.G466W	ENST00000367921	NM_006182.2	466	Ggg/Tgg																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230461135	230461136	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	23	382	0	ENST00000525115.1:c.1092_1093del	p.Glu365AspfsTer22	p.E365Dfs*22	ENST00000525115		364	ggGGag/ggag																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935380	36935380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	46	447	0	ENST00000361632.4:c.1347G>T	p.Trp449Cys	p.W449C	ENST00000361632		449	tgG/tgT																																																																															
ATM	472	MSKCC	GRCh37	11	108236187	108236187	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	111	465	0	ENST00000278616.4:c.9126del	p.Asn3044IlefsTer31	p.N3044Ifs*31	ENST00000278616	NM_000051.3	3041	gaC/ga																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633536	69633536	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	81	440	0	ENST00000334134.2:c.166C>G	p.Leu56Val	p.L56V	ENST00000334134	NM_005247.2	56	Ctc/Gtc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483893	88483893	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	43	451	0	ENST00000360948.2:c.1677C>A	p.Asn559Lys	p.N559K	ENST00000360948	NM_001012338.2	559	aaC/aaA																																																																															
NF1	4763	MSKCC	GRCh37	17	29687520	29687520	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	48	316	0	ENST00000358273.4:c.8176G>T	p.Asp2726Tyr	p.D2726Y	ENST00000358273	NM_001042492.2	2726	Gac/Tac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435532	56435533	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	69	461	0	ENST00000407977.2:c.1604_1605delinsTT	p.Ser535Phe	p.S535F	ENST00000407977		535	tCG/tTT																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435538	56435538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	73	465	0	ENST00000407977.2:c.1599G>T	p.Leu533Phe	p.L533F	ENST00000407977		533	ttG/ttT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222908	36222908	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs770989958		P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			783	61	547	0	ENST00000222270.7:c.5537G>T	p.Arg1846Leu	p.R1846L	ENST00000222270	NM_014727.1	1846	cGg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228578	36228578	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	325	476	0	ENST00000222270.7:c.7592A>T	p.His2531Leu	p.H2531L	ENST00000222270	NM_014727.1	2531	cAc/cTc																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6213787	6213787	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	98	514	0	ENST00000252674.7:c.1429G>T	p.Glu477Ter	p.E477*	ENST00000252674	NM_005934.3	477	Gag/Tag																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182628	38182628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	87	425	0	ENST00000396334.3:c.781C>T	p.His261Tyr	p.H261Y	ENST00000396334	NM_002468.4	261	Cat/Tat																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390118	89390118	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1259444587		P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	280	352	0	ENST00000336596.2:c.867G>C	p.Lys289Asn	p.K289N	ENST00000336596	NM_005233.5	289	aaG/aaC																																																																															
REST	5978	MSKCC	GRCh37	4	57796893	57796893	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	126	549	0	ENST00000309042.7:c.1872del	p.Val626PhefsTer91	p.V626Ffs*91	ENST00000309042	NM_005612.4	623	aaG/aa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356380	66356380	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	95	394	0	ENST00000273854.3:c.1117G>C	p.Val373Leu	p.V373L	ENST00000273854	NM_004439.5	373	Gtc/Ctc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876529	35876529	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	296	458	0	ENST00000303115.3:c.1321C>A	p.Leu441Met	p.L441M	ENST00000303115	NM_002185.3	441	Ctg/Atg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564298	86564298	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1024971030		P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	160	466	0	ENST00000274376.6:c.30G>T	p.Glu10Asp	p.E10D	ENST00000274376	NM_002890.2	10	gaG/gaT																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004675	150004675	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs907085470		P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	154	528	0	ENST00000253339.5:c.1550C>T	p.Pro517Leu	p.P517L	ENST00000253339		517	cCt/cTt																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271215	26271215	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	47	463	0	ENST00000305910.3:c.398G>C	p.Gly133Ala	p.G133A	ENST00000305910	NM_003534.2	133	gGg/gCg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444323	50444323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	185	484	0	ENST00000331340.3:c.253C>A	p.Leu85Ile	p.L85I	ENST00000331340	NM_006060.4	85	Ctt/Att																																																																															
PREX2	80243	MSKCC	GRCh37	8	68984728	68984728	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	137	303	0	ENST00000288368.4:c.1494-2A>G		p.X498_splice	ENST00000288368	NM_024870.2	498																																																																																
TSC1	7248	MSKCC	GRCh37	9	135786458	135786458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	37	361	0	ENST00000298552.3:c.1072C>G	p.Pro358Ala	p.P358A	ENST00000298552	NM_001162426.1	358	Cct/Gct																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139404392	139404393	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0077273-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	131	555	0	ENST00000277541.6:c.2761_2762del	p.Ser921LeufsTer22	p.S921Lfs*22	ENST00000277541	NM_017617.3	921	TCc/c																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0077274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	35	241	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431484	121431484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	32	442	0	ENST00000257555.6:c.688G>A	p.Glu230Lys	p.E230K	ENST00000257555		230	Gag/Aag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11205059	11205059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	36	492	0	ENST00000361445.4:c.4730C>T	p.Ala1577Val	p.A1577V	ENST00000361445	NM_004958.3	1577	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0077276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	110	581	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0077276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	38	274	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
IRF4	3662	MSKCC	GRCh37	6	393168	393168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	34	509	0	ENST00000380956.4:c.16G>A	p.Gly6Ser	p.G6S	ENST00000380956	NM_001195286.1	6	Ggc/Agc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910842	114910842	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs773954064		P-0077276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	102	483	0	ENST00000543371.1:c.961C>T	p.Gln321Ter	p.Q321*	ENST00000543371	NM_001198531.1	321	Cag/Tag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	459886	459887	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0077276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	80	417	0	ENST00000399788.2:c.1208_1209del	p.Glu403GlyfsTer44	p.E403Gfs*44	ENST00000399788	NM_001042603.1	403	gAA/g																																																																															
SLX4	84464	MSKCC	GRCh37	16	3656567	3656567	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	76	600	0	ENST00000294008.3:c.668G>T	p.Arg223Leu	p.R223L	ENST00000294008	NM_032444.2	223	cGt/cTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29653121	29653121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	84	533	0	ENST00000358273.4:c.5119G>A	p.Val1707Ile	p.V1707I	ENST00000358273	NM_001042492.2	1707	Gtt/Att																																																																															
APC	324	MSKCC	GRCh37	5	112175177	112175180	+	frameshift_variant	Frame_Shift_Del	DEL	GCAG	GCAG	-			P-0077276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	78	496	0	ENST00000257430.4:c.3886_3889del	p.Ala1296IlefsTer8	p.A1296Ifs*8	ENST00000257430	NM_000038.5	1296	GCAGat/at																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	113	518	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0077279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	153	470	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120178	70120178	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057518216		P-0077279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	162	572	0	ENST00000245479.2:c.1180C>T	p.Arg394Ter	p.R394*	ENST00000245479	NM_000346.3	394	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112163696	112163697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0077279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	65	288	0	ENST00000257430.4:c.1620dup	p.Gln541ThrfsTer19	p.Q541Tfs*19	ENST00000257430	NM_000038.5	540	tta/ttAa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2202742	2202742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	38	483	0	ENST00000398665.3:c.751C>T	p.His251Tyr	p.H251Y	ENST00000398665	NM_032482.2	251	Cac/Tac																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30132954	30132954	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763885568		P-0077279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	41	476	1	ENST00000331968.5:c.647G>A	p.Arg216His	p.R216H	ENST00000331968	NM_002742.2	216	cGc/cAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912194	114912194	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	112	391	0	ENST00000543371.1:c.1264A>T	p.Asn422Tyr	p.N422Y	ENST00000543371	NM_001198531.1	422	Aac/Tac																																																																															
POT1	25913	MSKCC	GRCh37	7	124499058	124499058	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	24	337	0	ENST00000357628.3:c.655G>A	p.Asp219Asn	p.D219N	ENST00000357628	NM_015450.2	219	Gac/Aac																																																																															
CTCF	10664	MSKCC	GRCh37	16	67662453	67662453	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs879255516		P-0077280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	63	391	0	ENST00000264010.4:c.1699C>T	p.Arg567Trp	p.R567W	ENST00000264010	NM_006565.3	567	Cgg/Tgg																																																																															
RHOA	387	MSKCC	GRCh37	3	49397742	49397742	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	11	352	0	ENST00000418115.1:c.482C>A	p.Ala161Glu	p.A161E	ENST00000418115	NM_001664.2	161	gCa/gAa																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589803	69589803	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	81	694	0	ENST00000168712.1:c.50T>C	p.Leu17Pro	p.L17P	ENST00000168712	NM_002007.2	17	cTg/cCg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944169	71944169	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148045527		P-0077282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			52	44	675	0	ENST00000298229.2:c.2002C>T	p.Arg668Trp	p.R668W	ENST00000298229	NM_001567.3	668	Cgg/Tgg																																																																															
BTK	695	MSKCC	GRCh37	X	100615686	100615686	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	44	486	0	ENST00000308731.7:c.646C>A	p.Leu216Met	p.L216M	ENST00000308731	NM_000061.2	216	Ctg/Atg																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799726	72799726	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			53	57	547	0	ENST00000325599.8:c.1443A>C	p.Lys481Asn	p.K481N	ENST00000325599	NM_018130.2	481	aaA/aaC																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717724	89717724	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			50	35	309	0	ENST00000371953.3:c.749del	p.Cys250LeufsTer6	p.C250Lfs*6	ENST00000371953	NM_000314.4	250	tGt/tt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579526	7579527	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	ACCATTGTTCAAT			P-0077282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	23	672	0	ENST00000269305.4:c.148_160dup	p.Phe54TyrfsTer2	p.F54Yfs*2	ENST00000269305	NM_001126112.2	54	ttc/tATTGAACAATGGTtc																																																																															
ALK	238	MSKCC	GRCh37	2	29606679	29606679	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs865931787		P-0077286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	24	377	0	ENST00000389048.3:c.1201C>T	p.Arg401Ter	p.R401*	ENST00000389048	NM_004304.4	401	Cga/Tga																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50482421	50482421	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0077286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	56	317	0	ENST00000394963.4:c.771+1G>T		p.X257_splice	ENST00000394963	NM_003076.4	257																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0077286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	44	279	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PGR	5241	MSKCC	GRCh37	11	100999150	100999150	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	59	493	0	ENST00000325455.5:c.652G>T	p.Ala218Ser	p.A218S	ENST00000325455	NM_001202474.3	218	Gcg/Tcg																																																																															
ATM	472	MSKCC	GRCh37	11	108165673	108165675	+	missense_variant	Missense_Mutation	ONP	CAG	CAG	TTA			P-0077286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	24	253	0	ENST00000278616.4:c.4796_4798delinsTTA	p.Ser1599_Val1600delinsPheIle	p.S1599_V1600delinsFI	ENST00000278616	NM_000051.3	1599	tCAGta/tTTAta																																																																															
ATR	545	MSKCC	GRCh37	3	142266724	142266724	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	46	290	0	ENST00000350721.4:c.3200T>G	p.Leu1067Arg	p.L1067R	ENST00000350721	NM_001184.3	1067	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578505	7578507	+	missense_variant	Missense_Mutation	ONP	GGG	GGG	AGC			P-0077286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	59	481	0	ENST00000269305.4:c.423_425delinsGCT	p.Cys141_Pro142delinsTrpLeu	p.C141_P142delinsWL	ENST00000269305	NM_001126112.2	141	tgCCCt/tgGCTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822106	72822108	+	missense_variant	Missense_Mutation	ONP	GGG	GGG	AGA			P-0077286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	40	504	0	ENST00000268489.5:c.10067_10069delinsTCT	p.Ser3356_Pro3357delinsPheSer	p.S3356_P3357delinsFS	ENST00000268489	NM_006885.3	3356	tCCCca/tTCTca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0077289-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			569	563	617	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2097749	2097749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077289-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			640	117	499	0	ENST00000219066.1:c.100G>A	p.Glu34Lys	p.E34K	ENST00000219066	NM_002528.5	34	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1279524	1279524	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077289-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			662	121	437	0	ENST00000310581.5:c.2012G>T	p.Arg671Leu	p.R671L	ENST00000310581	NM_198253.2	671	cGg/cTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602252	10602254	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CCT	CCT	-			P-0077289-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			419	325	494	0	ENST00000171111.5:c.1324_1325+1del		p.X442_splice	ENST00000171111	NM_203500.1	442																																																																																
STK11	6794	MSKCC	GRCh37	19	1221325	1221325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077289-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			489	311	529	0	ENST00000326873.7:c.848C>A	p.Ser283Tyr	p.S283Y	ENST00000326873	NM_000455.4	283	tCt/tAt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737088	145737088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077289-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			657	144	545	0	ENST00000428558.2:c.3478G>A	p.Val1160Met	p.V1160M	ENST00000428558	NM_004260.3	1160	Gtg/Atg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221257	1221257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077289-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			459	284	537	0	ENST00000326873.7:c.780C>G	p.Ile260Met	p.I260M	ENST00000326873	NM_000455.4	260	atC/atG																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100319	8100319	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077289-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			997	157	634	0	ENST00000346208.3:c.293A>T	p.Asp98Val	p.D98V	ENST00000346208		98	gAc/gTc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2084123	2084123	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077289-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			432	103	382	0	ENST00000349721.2:c.2453T>C	p.Leu818Pro	p.L818P	ENST00000349721	NM_003070.3	818	cTa/cCa																																																																															
ATR	545	MSKCC	GRCh37	3	142277598	142277598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077289-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			184	126	289	0	ENST00000350721.4:c.1753C>T	p.His585Tyr	p.H585Y	ENST00000350721	NM_001184.3	585	Cat/Tat																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129576	2129577	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0077289-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			707	120	507	0	ENST00000219476.3:c.3305_3306del	p.Val1102GlufsTer65	p.V1102Efs*65	ENST00000219476	NM_000548.3	1101	caTGtg/catg																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47597182	47597182	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077289-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			586	102	363	0	ENST00000395288.2:c.659G>C	p.Arg220Thr	p.R220T	ENST00000395288	NM_016506.5	220	aGa/aCa																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96920605	96920605	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077289-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			699	125	401	0	ENST00000258439.3:c.375C>G	p.Ile125Met	p.I125M	ENST00000258439	NM_001193304.2	125	atC/atG																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11129635	11129635	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0077289-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			538	144	489	0	ENST00000344626.4:c.2441C>A	p.Thr814Lys	p.T814K	ENST00000344626	NM_003072.3	814	aCg/aAg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95574801	95574801	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077289-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			471	83	391	0	ENST00000343455.3:c.2296C>G	p.Gln766Glu	p.Q766E	ENST00000343455	NM_177438.2	766	Cag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0077293-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	287	605	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68857304	68857310	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CAAGAAT	CAAGAAT	-			P-0077293-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	180	354	0	ENST00000261769.5:c.1940_1946del	p.Gln647LeufsTer4	p.Q647Lfs*4	ENST00000261769	NM_004360.3	647	CAAGAATct/ct																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612783	228612783	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1202634115		P-0077293-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	262	788	0	ENST00000366696.1:c.244G>A	p.Asp82Asn	p.D82N	ENST00000366696	NM_003493.2	82	Gac/Aac																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0077294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	84	226	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0077294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	102	318	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0077294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	143	345	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519930		P-0077294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	94	228	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112173992	112173992	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1114167559		P-0077294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	106	347	0	ENST00000257430.4:c.2701C>T	p.Gln901Ter	p.Q901*	ENST00000257430	NM_000038.5	901	Cag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42052636	42052636	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1054243525		P-0077294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	130	337	0	ENST00000219905.7:c.7307G>A	p.Arg2436His	p.R2436H	ENST00000219905	NM_001164273.1	2436	cGt/cAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509082	66509082	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0077294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	80	162	0	ENST00000273854.3:c.245G>T	p.Gly82Val	p.G82V	ENST00000273854	NM_004439.5	82	gGg/gTg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2104017	2104017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	106	263	0	ENST00000349721.2:c.3140G>A	p.Arg1047Gln	p.R1047Q	ENST00000349721	NM_003070.3	1047	cGg/cAg																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898319	63898348	+	inframe_deletion	In_Frame_Del	DEL	CGCGGCGGCGGCGGCGGGCGGAGCAGCGGC	CGCGGCGGCGGCGGCGGGCGGAGCAGCGGC	-			P-0077294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	82	211	0	ENST00000295900.6:c.51_80del	p.Ala19_Ala28del	p.A19_A28del	ENST00000295900	NM_000333.3	15	cgCGCGGCGGCGGCGGCGGGCGGAGCAGCGGCc/cgc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120662	94120662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	51	310	0	ENST00000369303.4:c.389C>T	p.Thr130Ile	p.T130I	ENST00000369303	NM_004440.3	130	aCa/aTa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412751	63412751	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	152	369	0	ENST00000330258.3:c.416C>G	p.Thr139Arg	p.T139R	ENST00000330258	NM_152424.3	139	aCa/aGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	32	211	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	49	303	1	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	86	387	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28578215	28578216	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	28	318	0	ENST00000241453.7:c.2955_2956del	p.Pro986AlafsTer27	p.P986Afs*27	ENST00000241453	NM_004119.2	985	tcTCcg/tccg																																																																															
AR	367	MSKCC	GRCh37	X	66765149	66765151	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-	rs764402637		P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	11	211	2	ENST00000374690.3:c.170_172del	p.Leu57del	p.L57del	ENST00000374690	NM_000044.3	54	tTGCtg/ttg																																																																															
APC	324	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	74	434	0	ENST00000257430.4:c.4364del	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	56	369	0	ENST00000257430.4:c.4192_4193del	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	47	268	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24159023	24159023	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776693680		P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	63	377	0	ENST00000263121.7:c.695C>T	p.Thr232Met	p.T232M	ENST00000263121	NM_003073.3	232	aCg/aTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202149799	202149799	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	66	399	0	ENST00000358485.4:c.1245del	p.Phe415LeufsTer26	p.F415Lfs*26	ENST00000358485	NM_001080125.1	414	Ttt/tt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005515	150005515	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	47	394	0	ENST00000253339.5:c.710del	p.Pro237HisfsTer6	p.P237Hfs*6	ENST00000253339		237	cCa/ca																																																																															
JAK3	3718	MSKCC	GRCh37	19	17951085	17951085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	52	273	0	ENST00000458235.1:c.1208G>A	p.Arg403His	p.R403H	ENST00000458235	NM_000215.3	403	cGc/cAc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262139	10262139	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	80	416	6	ENST00000340748.4:c.2152del	p.Met718CysfsTer59	p.M718Cfs*59	ENST00000340748		718	Atg/tg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027196	48027196	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	27	329	1	ENST00000234420.5:c.2079del	p.Lys693AsnfsTer43	p.K693Nfs*43	ENST00000234420	NM_000179.2	692	Aaa/aa																																																																															
ERG	2078	MSKCC	GRCh37	21	39772519	39772519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	24	331	0	ENST00000288319.7:c.722C>T	p.Thr241Met	p.T241M	ENST00000288319	NM_182918.3	241	aCg/aTg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856623	111856623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	24	301	0	ENST00000341259.2:c.674G>A	p.Arg225His	p.R225H	ENST00000341259	NM_005475.2	225	cGc/cAc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37042540	37042540	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267607727		P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	62	261	0	ENST00000231790.2:c.302G>A	p.Gly101Asp	p.G101D	ENST00000231790	NM_000249.3	101	gGt/gAt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	51	359	0	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																																																															
BARD1	580	MSKCC	GRCh37	2	215645974	215645975	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs587780033		P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	54	378	0	ENST00000260947.4:c.623dup	p.Lys209GlufsTer5	p.K209Efs*5	ENST00000260947	NM_000465.2	208	aag/aaAg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210766	2210766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	25	385	0	ENST00000398665.3:c.1266del	p.Glu423SerfsTer66	p.E423Sfs*66	ENST00000398665	NM_032482.2	421	aaC/aa																																																																															
ATRX	546	MSKCC	GRCh37	X	76937603	76937603	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	44	378	1	ENST00000373344.5:c.3145del	p.Ile1049Ter	p.I1049*	ENST00000373344	NM_000489.3	1049	Ata/ta																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	61	287	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72890251	72890251	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200658486		P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	66	266	0	ENST00000325599.8:c.431C>T	p.Pro144Leu	p.P144L	ENST00000325599	NM_018130.2	144	cCg/cTg																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519504	137519505	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	44	365	1	ENST00000367739.4:c.1132_1133dup	p.Ser378ArgfsTer6	p.S378Rfs*6	ENST00000367739	NM_000416.2	378	agt/agAGt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271255	38271255	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs555706876		P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	68	412	0	ENST00000425967.3:c.2453C>T	p.Thr818Met	p.T818M	ENST00000425967	NM_001174067.1	818	aCg/aTg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805787	32805788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1174402903		P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	106	425	0	ENST00000374899.4:c.223dup	p.Leu75ProfsTer92	p.L75Pfs*92	ENST00000374899	NM_018833.2	75	ctg/cCtg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821889	72821890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	38	384	0	ENST00000268489.5:c.10285dup	p.Arg3429ProfsTer2	p.R3429Pfs*2	ENST00000268489	NM_006885.3	3429	cgt/cCgt																																																																															
HGF	3082	MSKCC	GRCh37	7	81336661	81336661	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	27	275	0	ENST00000222390.5:c.1561G>T	p.Gly521Ter	p.G521*	ENST00000222390	NM_000601.4	521	Gga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845190	151845190	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764910946		P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	30	394	1	ENST00000262189.6:c.13822C>T	p.Arg4608Cys	p.R4608C	ENST00000262189	NM_170606.2	4608	Cgc/Tgc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157525012	157525012	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1022849043		P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	81	384	0	ENST00000346085.5:c.4907C>T	p.Ala1636Val	p.A1636V	ENST00000346085	NM_020732.3	1636	gCg/gTg																																																																															
SYK	6850	MSKCC	GRCh37	9	93650843	93650843	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748067972		P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	54	299	0	ENST00000375746.1:c.1769G>A	p.Arg590Gln	p.R590Q	ENST00000375746	NM_001174167.1	590	cGg/cAg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639155	3639155	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777033175		P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	50	409	0	ENST00000294008.3:c.4484C>T	p.Ala1495Val	p.A1495V	ENST00000294008	NM_032444.2	1495	gCg/gTg																																																																															
MSI2	124540	MSKCC	GRCh37	17	55752465	55752465	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1382332810		P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	41	346	0	ENST00000284073.2:c.923C>T	p.Ser308Leu	p.S308L	ENST00000284073	NM_138962.2	308	tCg/tTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845715	151845715	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759582255		P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	123	382	0	ENST00000262189.6:c.13297G>A	p.Ala4433Thr	p.A4433T	ENST00000262189	NM_170606.2	4433	Gct/Act																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	67	490	0	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832559	72832559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	52	324	0	ENST00000268489.5:c.4022G>A	p.Ser1341Asn	p.S1341N	ENST00000268489	NM_006885.3	1341	aGc/aAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs770248150		P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	86	287	0	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																																																															
TERT	7015	MSKCC	GRCh37	5	1295466	1295466	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	72	367	1				ENST00000310581	NM_198253.2																																																																																	
IFNGR1	3459	MSKCC	GRCh37	6	137522047	137522047	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	55	271	0	ENST00000367739.4:c.832del	p.Glu278LysfsTer4	p.E278Kfs*4	ENST00000367739	NM_000416.2	278	Gaa/aa																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868137	45868137	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139884931		P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	38	342	0	ENST00000391945.4:c.553C>T	p.Arg185Trp	p.R185W	ENST00000391945	NM_000400.3	185	Cgg/Tgg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005428	150005428	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	78	445	0	ENST00000253339.5:c.797del	p.Pro266LeufsTer19	p.P266Lfs*19	ENST00000253339		266	cCt/ct																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118371745	118371745	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	60	295	0	ENST00000534358.1:c.6202T>G	p.Cys2068Gly	p.C2068G	ENST00000534358	NM_005933.3	2068	Tgt/Ggt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741276	145741276	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	65	449	0	ENST00000428558.2:c.1132-2A>G		p.X378_splice	ENST00000428558	NM_004260.3	378																																																																																
PALB2	79728	MSKCC	GRCh37	16	23641307	23641307	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	75	373	0	ENST00000261584.4:c.2168T>C	p.Met723Thr	p.M723T	ENST00000261584	NM_024675.3	723	aTg/aCg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0077320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	116	404	1	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs775126020		P-0077320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	77	286	0	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120132	70120133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0077320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	277	415	0	ENST00000245479.2:c.1137_1138dup	p.His380ArgfsTer4	p.H380Rfs*4	ENST00000245479	NM_000346.3	378	-/GC																																																																															
APC	324	MSKCC	GRCh37	5	112173817	112173820	+	frameshift_variant	Frame_Shift_Del	DEL	TAGT	TAGT	-			P-0077320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	71	351	0	ENST00000257430.4:c.2527_2530del	p.Ser843LeufsTer17	p.S843Lfs*17	ENST00000257430	NM_000038.5	842	gaTAGT/ga																																																																															
SOS1	6654	MSKCC	GRCh37	2	39222330	39222330	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs963283940		P-0077320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	88	345	1	ENST00000402219.2:c.3280G>A	p.Gly1094Ser	p.G1094S	ENST00000402219	NM_005633.3	1094	Ggt/Agt																																																																															
ATR	545	MSKCC	GRCh37	3	142177853	142177853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	19	326	0	ENST00000350721.4:c.7450G>A	p.Asp2484Asn	p.D2484N	ENST00000350721	NM_001184.3	2484	Gat/Aat																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680217	30680217	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	102	422	0	ENST00000376406.3:c.1502C>G	p.Ala501Gly	p.A501G	ENST00000376406	NM_014641.2	501	gCa/gGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0077322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	125	366	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0077322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	69	219	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119780	70119781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0077322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	66	269	0	ENST00000245479.2:c.788dup	p.Arg264GlnfsTer32	p.R264Qfs*32	ENST00000245479	NM_000346.3	261	gag/gaGg																																																																															
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0077322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	136	283	0	ENST00000257430.4:c.4063dup	p.Ser1355PhefsTer20	p.S1355Ffs*20	ENST00000257430	NM_000038.5	1353	-/T																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29106048	29106048	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs730881687		P-0077322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	38	171	0	ENST00000328354.6:c.793-1G>A		p.X265_splice	ENST00000328354	NM_007194.3	265																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153253831	153253831	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	50	194	0	ENST00000281708.4:c.902T>C	p.Leu301Pro	p.L301P	ENST00000281708	NM_033632.3	301	cTg/cCg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023704	27023705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0077322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	22	249	0	ENST00000324856.7:c.812dup	p.Gly272ArgfsTer128	p.G272Rfs*128	ENST00000324856	NM_006015.4	270	-/T																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0077324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	47	383	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
MGA	23269	MSKCC	GRCh37	15	41991137	41991137	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0077324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	91	404	1	ENST00000219905.7:c.2090C>A	p.Ser697Ter	p.S697*	ENST00000219905	NM_001164273.1	697	tCa/tAa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438319	110438319	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs769951329		P-0077324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	48	365	0	ENST00000375856.3:c.82A>C	p.Asn28His	p.N28H	ENST00000375856	NM_003749.2	28	Aac/Cac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404651	8404651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	18	372	0	ENST00000356435.5:c.4096C>A	p.Pro1366Thr	p.P1366T	ENST00000356435		1366	Cct/Act																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733101	74733101	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	29	472	0	ENST00000359995.5:c.142G>T	p.Asp48Tyr	p.D48Y	ENST00000359995	NM_001195427.1	48	Gac/Tac																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582005	95582005	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0077324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	60	575	0	ENST00000343455.3:c.1906A>T	p.Arg636Ter	p.R636*	ENST00000343455	NM_177438.2	636	Aga/Tga																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659773	227659773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	14	352	0	ENST00000305123.5:c.3682G>T	p.Ala1228Ser	p.A1228S	ENST00000305123	NM_005544.2	1228	Gcc/Tcc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419986	41419986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	27	566	0	ENST00000373198.4:c.335G>T	p.Arg112Leu	p.R112L	ENST00000373198	NM_133170.3	112	cGt/cTt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134825353	134825354	+	missense_variant	Missense_Mutation	DNP	AC	AC	CT			P-0077324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	48	459	0	ENST00000398015.3:c.869_870delinsCT	p.Asn290Thr	p.N290T	ENST00000398015	NM_004441.4	290	aAC/aCT																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349996	15349996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	14	530	0	ENST00000263377.2:c.3656C>T	p.Ser1219Leu	p.S1219L	ENST00000263377	NM_058243.2	1219	tCa/tTa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135778087	135778087	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	85	425	0	ENST00000298552.3:c.2296G>T	p.Glu766Ter	p.E766*	ENST00000298552	NM_001162426.1	766	Gag/Tag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170226	32170226	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	89	545	0	ENST00000375023.3:c.3382C>A	p.Pro1128Thr	p.P1128T	ENST00000375023	NM_004557.3	1128	Cca/Aca																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423496	47423496	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	23	531	0	ENST00000404338.3:c.1564G>T	p.Asp522Tyr	p.D522Y	ENST00000404338	NM_004491.4	522	Gat/Tat																																																																															
ALK	238	MSKCC	GRCh37	2	29551234	29551234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	50	482	0	ENST00000389048.3:c.1396G>T	p.Asp466Tyr	p.D466Y	ENST00000389048	NM_004304.4	466	Gat/Tat																																																																															
FLT1	2321	MSKCC	GRCh37	13	29005384	29005384	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	32	385	0	ENST00000282397.4:c.877T>C	p.Tyr293His	p.Y293H	ENST00000282397	NM_002019.4	293	Tac/Cac																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435561	110435561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	15	418	1	ENST00000375856.3:c.2840C>T	p.Ser947Leu	p.S947L	ENST00000375856	NM_003749.2	947	tCg/tTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978336	2978336	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	43	472	0	ENST00000396946.4:c.994C>A	p.Gln332Lys	p.Q332K	ENST00000396946	NM_032415.4	332	Cag/Aag																																																																															
MED12	9968	MSKCC	GRCh37	X	70356270	70356270	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	16	476	0	ENST00000374080.3:c.5166del	p.Leu1723CysfsTer8	p.L1723Cfs*8	ENST00000374080		1722	cGg/cg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455169	50455169	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0077324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	16	376	0	ENST00000331340.3:c.715+1G>A		p.X239_splice	ENST00000331340	NM_006060.4	239																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0077327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	44	356	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	73	384	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0077327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	70	366	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579865	7579868	+	frameshift_variant	Frame_Shift_Del	DEL	CTGA	CTGA	-			P-0077327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	82	390	0	ENST00000269305.4:c.45_48del	p.Ser15ArgfsTer28	p.S15Rfs*28	ENST00000269305	NM_001126112.2	15	agTCAG/ag																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279304	18279304	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761752973		P-0077327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	72	381	0	ENST00000222254.8:c.1756G>A	p.Ala586Thr	p.A586T	ENST00000222254	NM_005027.3	586	Gcc/Acc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134885789	134885789	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779297354		P-0077327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	65	314	0	ENST00000398015.3:c.1700G>A	p.Arg567Gln	p.R567Q	ENST00000398015	NM_004441.4	567	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0077327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	37	208	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811722	102811722	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	84	475	0	ENST00000307046.8:c.462G>T	p.Lys154Asn	p.K154N	ENST00000307046	NM_001111285.1	154	aaG/aaT																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879601	37879601	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	32	372	0	ENST00000269571.5:c.1976T>A	p.Val659Asp	p.V659D	ENST00000269571		659	gTt/gAt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489481	56489481	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	27	280	0	ENST00000267101.3:c.1946T>G	p.Ile649Arg	p.I649R	ENST00000267101	NM_001982.3	649	aTa/aGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0077330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	98	598	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100005	157100006	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGA	rs748785872		P-0077330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	14	413	0	ENST00000346085.5:c.954_956dup	p.Gly319dup	p.G319dup	ENST00000346085	NM_020732.3	319	-/GGA																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435283	110435283	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs997942200		P-0077330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	30	579	0	ENST00000375856.3:c.3118G>A	p.Glu1040Lys	p.E1040K	ENST00000375856	NM_003749.2	1040	Gag/Aag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99472832	99472832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	105	405	0	ENST00000268035.6:c.2828C>A	p.Ala943Asp	p.A943D	ENST00000268035	NM_000875.3	943	gCt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112162945	112162946	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0077330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	46	350	0	ENST00000257430.4:c.1548+2dup		p.X516_splice	ENST00000257430	NM_000038.5	516																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151845880	151845880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	77	521	0	ENST00000262189.6:c.13132G>A	p.Glu4378Lys	p.E4378K	ENST00000262189	NM_170606.2	4378	Gaa/Aaa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114901077	114901077	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0077330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	85	416	0	ENST00000543371.1:c.685+2T>G		p.X229_splice	ENST00000543371	NM_001198531.1	229																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0077330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	63	279	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287301	33287301	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs772252582		P-0077330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	75	567	0	ENST00000374542.5:c.1796C>G	p.Thr599Ser	p.T599S	ENST00000374542	NM_001141970.1	599	aCt/aGt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123164974	123164974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0077330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	45	361	0	ENST00000218089.9:c.287A>T	p.Gln96Leu	p.Q96L	ENST00000218089	NM_001042749.1	96	cAg/cTg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94194145	94194145	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	64	303	0	ENST00000323929.3:c.1283G>C	p.Arg428Thr	p.R428T	ENST00000323929	NM_005591.3	428	aGg/aCg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119814	70119815	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0077330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	57	439	0	ENST00000245479.2:c.817dup	p.Val273GlyfsTer23	p.V273Gfs*23	ENST00000245479	NM_000346.3	272	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs864622237		P-0077331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	134	369	0	ENST00000269305.4:c.700T>A	p.Tyr234Asn	p.Y234N	ENST00000269305	NM_001126112.2	234	Tac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	97	290	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44820550	44820551	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGAT			P-0077331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	68	175	0	ENST00000377967.4:c.247_248insAGAT	p.Leu83GlnfsTer7	p.L83Qfs*7	ENST00000377967	NM_021140.2	83	cta/cAGATta																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	68	482	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106580	27106580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	119	534	0	ENST00000324856.7:c.6191T>C	p.Leu2064Pro	p.L2064P	ENST00000324856	NM_006015.4	2064	cTc/cCc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438734	49438734	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759873461		P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	181	457	0	ENST00000301067.7:c.4756C>T	p.Arg1586Cys	p.R1586C	ENST00000301067	NM_003482.3	1586	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446735	49446735	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372085797		P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	170	451	0	ENST00000301067.7:c.1075C>T	p.Arg359Cys	p.R359C	ENST00000301067	NM_003482.3	359	Cgc/Tgc																																																																															
RB1	5925	MSKCC	GRCh37	13	48951087	48951087	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	14	261	0	ENST00000267163.4:c.1252del	p.Arg418GlufsTer2	p.R418Efs*2	ENST00000267163	NM_000321.2	417	Aaa/aa																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281176	49281176	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758137158		P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	134	475	0	ENST00000282018.3:c.223G>A	p.Val75Ile	p.V75I	ENST00000282018	NM_020377.2	75	Gtt/Att																																																																															
BLM	641	MSKCC	GRCh37	15	91347484	91347484	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	28	438	0	ENST00000355112.3:c.3651del	p.Lys1217AsnfsTer62	p.K1217Nfs*62	ENST00000355112	NM_000057.2	1216	Aaa/aa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223792	2223792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	85	491	0	ENST00000326181.6:c.1090G>A	p.Glu364Lys	p.E364K	ENST00000326181	NM_032271.2	364	Gag/Aag																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	101	444	6	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	220	614	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	69	494	12	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470548	25470548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	95	475	1	ENST00000264709.3:c.926G>A	p.Arg309His	p.R309H	ENST00000264709	NM_175629.2	309	cGc/cAc																																																																															
ALK	238	MSKCC	GRCh37	2	30143051	30143051	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367875912		P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	24	625	0	ENST00000389048.3:c.475G>A	p.Gly159Arg	p.G159R	ENST00000389048	NM_004304.4	159	Ggg/Agg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	60	538	5	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40757438	40757438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	36	451	0	ENST00000373198.4:c.2860G>A	p.Asp954Asn	p.D954N	ENST00000373198	NM_133170.3	954	Gat/Aat																																																																															
EP300	2033	MSKCC	GRCh37	22	41568502	41568502	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	16	309	0	ENST00000263253.7:c.4453-1G>T		p.X1485_splice	ENST00000263253	NM_001429.3	1485																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	35	240	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	42	431	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
TET2	54790	MSKCC	GRCh37	4	106197584	106197584	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs982791029		P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	24	473	0	ENST00000380013.4:c.5917G>A	p.Glu1973Lys	p.E1973K	ENST00000380013	NM_001127208.2	1973	Gaa/Aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187525646	187525648	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs1454581466		P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	44	456	0	ENST00000441802.2:c.10431_10433del	p.Phe3478del	p.F3478del	ENST00000441802	NM_005245.3	3477	ttCTTt/ttt																																																																															
KIT	3815	MSKCC	GRCh37	4	55594061	55594061	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs891140054		P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	92	352	0	ENST00000288135.5:c.1847C>T	p.Ala616Val	p.A616V	ENST00000288135	NM_000222.2	616	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112174916	112174916	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201185479		P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	42	444	0	ENST00000257430.4:c.3625G>A	p.Glu1209Lys	p.E1209K	ENST00000257430	NM_000038.5	1209	Gaa/Aaa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295173	1295173	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	58	393	0				ENST00000310581	NM_198253.2																																																																																	
TNFAIP3	7128	MSKCC	GRCh37	6	138199945	138199945	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	99	515	0	ENST00000237289.4:c.1368del	p.Pro457LeufsTer20	p.P457Lfs*20	ENST00000237289	NM_001270507.1	455	Ggg/gg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120318	94120318	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41273629		P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	111	480	0	ENST00000369303.4:c.733G>A	p.Ala245Thr	p.A245T	ENST00000369303	NM_004440.3	245	Gcc/Acc																																																																															
SMO	6608	MSKCC	GRCh37	7	128845224	128845224	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376509030		P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	88	424	1	ENST00000249373.3:c.718G>A	p.Val240Ile	p.V240I	ENST00000249373	NM_005631.4	240	Gtc/Atc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	77	372	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372514	55372514	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768972880		P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	103	426	0	ENST00000297316.4:c.1204G>A	p.Ala402Thr	p.A402T	ENST00000297316	NM_022454.3	402	Gcc/Acc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965475	68965475	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760923944		P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	103	490	1	ENST00000288368.4:c.1087C>T	p.Arg363Trp	p.R363W	ENST00000288368	NM_024870.2	363	Cgg/Tgg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399398	139399398	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771357343		P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	103	479	0	ENST00000277541.6:c.4745C>T	p.Pro1582Leu	p.P1582L	ENST00000277541	NM_017617.3	1582	cCg/cTg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123181348	123181348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	70	315	0	ENST00000218089.9:c.812G>A	p.Arg271Gln	p.R271Q	ENST00000218089	NM_001042749.1	271	cGg/cAg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933013	39933013	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	121	560	0	ENST00000378444.4:c.1586del	p.Asn529ThrfsTer60	p.N529Tfs*60	ENST00000378444	NM_001123385.1	529	aAc/ac																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230472968	230472968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	122	472	0	ENST00000525115.1:c.754C>A	p.Leu252Ile	p.L252I	ENST00000525115		252	Ctc/Atc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21619910	21619910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	118	462	0	ENST00000382592.4:c.256C>T	p.Pro86Ser	p.P86S	ENST00000382592	NM_014572.2	86	Cct/Tct																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910998	32910998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	133	488	0	ENST00000380152.3:c.2506C>T	p.Pro836Ser	p.P836S	ENST00000380152		836	Cct/Tct																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43708555	43708557	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	103	426	0	ENST00000382044.4:c.4739_4741del	p.Glu1580del	p.E1580del	ENST00000382044	NM_001141980.1	1580	gAAGgc/ggc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66781614	66781614	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	108	421	0	ENST00000307102.5:c.1022G>T	p.Cys341Phe	p.C341F	ENST00000307102	NM_002755.3	341	tGc/tTc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473587	67473587	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	88	378	0	ENST00000327367.4:c.667C>A	p.Pro223Thr	p.P223T	ENST00000327367	NM_005902.3	223	Cca/Aca																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868205	37868205	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519787		P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	96	416	0	ENST00000269571.5:c.926G>C	p.Gly309Ala	p.G309A	ENST00000269571		309	gGa/gCa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227647	36227647	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	99	458	0	ENST00000222270.7:c.7216G>T	p.Ala2406Ser	p.A2406S	ENST00000222270	NM_014727.1	2406	Gcc/Tcc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868163	45868163	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs146137795		P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	85	468	0	ENST00000391945.4:c.527A>G	p.Asn176Ser	p.N176S	ENST00000391945	NM_000400.3	176	aAc/aGc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295677	212295677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	35	363	0	ENST00000342788.4:c.2636G>A	p.Gly879Glu	p.G879E	ENST00000342788	NM_005235.2	879	gGa/gAa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31395703	31395703	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	114	505	0	ENST00000328111.2:c.2556T>A	p.Cys852Ter	p.C852*	ENST00000328111	NM_006892.3	852	tgT/tgA																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197447	26197447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	83	573	0	ENST00000356476.2:c.32C>T	p.Ser11Phe	p.S11F	ENST00000356476		11	tCc/tTc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737781	145737781	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747239208		P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	116	675	0	ENST00000428558.2:c.3049A>G	p.Arg1017Gly	p.R1017G	ENST00000428558	NM_004260.3	1017	Agg/Ggg																																																																															
SYK	6850	MSKCC	GRCh37	9	93657871	93657871	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755100350		P-0077333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	47	400	0	ENST00000375746.1:c.1897G>A	p.Val633Met	p.V633M	ENST00000375746	NM_001174167.1	633	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0077345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	136	384	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0077345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	78	308	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212289018	212289018	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs754195521		P-0077345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	56	404	0	ENST00000342788.4:c.2728A>G	p.Ile910Val	p.I910V	ENST00000342788	NM_005235.2	910	Ata/Gta																																																																															
MET	4233	MSKCC	GRCh37	7	116423407	116423407	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913671		P-0077346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	343	333	0	ENST00000397752.3:c.3682G>A	p.Asp1228Asn	p.D1228N	ENST00000397752	NM_000245.2	1228	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs863224499		P-0077346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	203	469	0	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
BRCA2	675	MSKCC	GRCh37	13	32931942	32931942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	79	390	0	ENST00000380152.3:c.7681C>A	p.Gln2561Lys	p.Q2561K	ENST00000380152		2561	Cag/Aag																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898320	63898320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	69	265	0	ENST00000295900.6:c.46G>T	p.Ala16Ser	p.A16S	ENST00000295900	NM_000333.3	16	Gcg/Tcg																																																																															
KIT	3815	MSKCC	GRCh37	4	55524194	55524194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	52	334	0	ENST00000288135.5:c.13C>T	p.Arg5Cys	p.R5C	ENST00000288135	NM_000222.2	5	Cgc/Tgc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206649661	206649661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	111	487	0	ENST00000367120.3:c.496G>A	p.Asp166Asn	p.D166N	ENST00000367120	NM_014002.3	166	Gat/Aat																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435510	110435510	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			734	52	422	0	ENST00000375856.3:c.2891G>C	p.Gly964Ala	p.G964A	ENST00000375856	NM_003749.2	964	gGc/gCc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222059	2222059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			733	131	506	0	ENST00000398665.3:c.2891C>A	p.Thr964Asn	p.T964N	ENST00000398665	NM_032482.2	964	aCc/aAc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207102	1207102	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0077350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	121	409	0	ENST00000326873.7:c.190A>T	p.Lys64Ter	p.K64*	ENST00000326873	NM_000455.4	64	Aag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602551	10602551	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	113	432	0	ENST00000171111.5:c.1027del	p.Glu343ArgfsTer57	p.E343Rfs*57	ENST00000171111	NM_203500.1	343	Gag/ag																																																																															
ATM	472	MSKCC	GRCh37	11	108235819	108235819	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs767507047		P-0077350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	81	370	0	ENST00000278616.4:c.8861A>G	p.Tyr2954Cys	p.Y2954C	ENST00000278616	NM_000051.3	2954	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	70	239	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602915	10602915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	124	308	0	ENST00000171111.5:c.663C>A	p.Phe221Leu	p.F221L	ENST00000171111	NM_203500.1	221	ttC/ttA																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0077352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	87	197	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0077352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	168	260	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112175789	112175789	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	80	260	0	ENST00000257430.4:c.4501del	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1500	Ttt/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0077352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	309	151	1	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0077353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	221	346	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034420	47034420	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0077353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	65	328	0	ENST00000329236.7:c.274C>T	p.Gln92Ter	p.Q92*	ENST00000329236	NM_001204466.1	92	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692901	89692901	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	10	316	0	ENST00000371953.3:c.385G>C	p.Gly129Arg	p.G129R	ENST00000371953	NM_000314.4	129	Gga/Cga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882005		P-0077355-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	114	347	0	ENST00000269305.4:c.713G>C	p.Cys238Ser	p.C238S	ENST00000269305	NM_001126112.2	238	tGt/tCt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78681705	78681705	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1452445269		P-0077355-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	112	441	0	ENST00000306801.3:c.413G>A	p.Arg138His	p.R138H	ENST00000306801	NM_020761.2	138	cGt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0077355-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	126	451	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245975	46245975	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077355-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	60	443	0	ENST00000334344.6:c.4069C>G	p.Leu1357Val	p.L1357V	ENST00000334344	NM_152641.2	1357	Cta/Gta																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498472	89498472	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077355-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	81	387	0	ENST00000336596.2:c.2444G>A	p.Trp815Ter	p.W815*	ENST00000336596	NM_005233.5	815	tGg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077357-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	132	390	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986971	36986971	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077357-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	117	363	0	ENST00000354822.5:c.718C>T	p.Gln240Ter	p.Q240*	ENST00000354822	NM_001079668.2	240	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221341	1221341	+	splice_donor_variant	Splice_Site	SNP	T	T	G	rs730881983		P-0077357-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	135	475	0	ENST00000326873.7:c.862+2T>G		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077357-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	75	272	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ATRX	546	MSKCC	GRCh37	X	76937572	76937572	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077357-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	111	187	0	ENST00000373344.5:c.3176A>T	p.Glu1059Val	p.E1059V	ENST00000373344	NM_000489.3	1059	gAa/gTa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15284909	15284909	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs757981410		P-0077357-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	93	413	0	ENST00000263388.2:c.4706C>G	p.Ala1569Gly	p.A1569G	ENST00000263388	NM_000435.2	1569	gCc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0077358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	46	450	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39251221	39251221	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	17	300	0	ENST00000402219.2:c.1132A>T	p.Thr378Ser	p.T378S	ENST00000402219	NM_005633.3	378	Aca/Tca																																																																															
PAX5	5079	MSKCC	GRCh37	9	36840603	36840603	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	28	371	0	ENST00000358127.4:c.1130G>T	p.Arg377Leu	p.R377L	ENST00000358127	NM_001280556.1	377	cGa/cTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0077358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	23	253	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221298	1221299	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0077358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	34	471	0	ENST00000326873.7:c.824dup	p.Asp277ArgfsTer8	p.D277Rfs*8	ENST00000326873	NM_000455.4	274	atc/atCc																																																																															
CENPA	1058	MSKCC	GRCh37	2	27016073	27016073	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	25	350	0	ENST00000335756.4:c.349G>C	p.Gly117Arg	p.G117R	ENST00000335756	NM_001809.3	117	Ggc/Cgc																																																																															
CENPA	1058	MSKCC	GRCh37	2	27016095	27016095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	18	334	0	ENST00000335756.4:c.371A>G	p.Lys124Arg	p.K124R	ENST00000335756	NM_001809.3	124	aAg/aGg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8633356	8633356	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs959497940		P-0077358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	21	392	0	ENST00000356435.5:c.313G>A	p.Gly105Arg	p.G105R	ENST00000356435		105	Gga/Aga																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38966789	38966789	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077358-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	21	313	0	ENST00000357387.3:c.1253A>G	p.His418Arg	p.H418R	ENST00000357387	NM_152756.3	418	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0077360-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	149	469	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0077360-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	143	225	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230493058	230493058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376716982		P-0077360-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	46	437	0	ENST00000525115.1:c.134G>A	p.Arg45Gln	p.R45Q	ENST00000525115		45	cGa/cAa																																																																															
CIC	23152	MSKCC	GRCh37	19	42794505	42794505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077360-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	66	492	0	ENST00000575354.2:c.1585G>T	p.Gly529Cys	p.G529C	ENST00000575354	NM_015125.3	529	Ggt/Tgt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473735	67473735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	173	374	0	ENST00000327367.4:c.815G>A	p.Gly272Glu	p.G272E	ENST00000327367	NM_005902.3	272	gGg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112111374	112111374	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1060503328		P-0077372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	89	273	0	ENST00000257430.4:c.471G>A	p.Trp157Ter	p.W157*	ENST00000257430	NM_000038.5	157	tgG/tgA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412029	63412029	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	123	542	0	ENST00000330258.3:c.1138G>T	p.Glu380Ter	p.E380*	ENST00000330258	NM_152424.3	380	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	116	276	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
B2M	567	MSKCC	GRCh37	15	45003750	45003754	+	frameshift_variant	Frame_Shift_Del	DEL	TCGCT	TCGCT	ACGC			P-0077372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	151	365	0	ENST00000558401.1:c.6_10delinsACGC	p.Ser4ProfsTer4	p.S4Pfs*4	ENST00000558401	NM_004048.2	2	tcTCGCTcc/tcACGCcc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395760	45395760	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	105	433	0	ENST00000262160.6:c.374A>G	p.His125Arg	p.H125R	ENST00000262160	NM_005901.5	125	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175917	112175917	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	122	467	0	ENST00000257430.4:c.4626del	p.Glu1544AsnfsTer21	p.E1544Nfs*21	ENST00000257430	NM_000038.5	1542	ccT/cc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5219973	5219973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	76	363	0	ENST00000357368.4:c.3742G>A	p.Ala1248Thr	p.A1248T	ENST00000357368	NM_002850.3	1248	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0077405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	17	323	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662127	227662127	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs745943416		P-0077405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	33	672	0	ENST00000305123.5:c.1328G>T	p.Arg443Leu	p.R443L	ENST00000305123	NM_005544.2	443	cGc/cTc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200703	128200703	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	16	534	0	ENST00000341105.2:c.1102C>A	p.Pro368Thr	p.P368T	ENST00000341105	NM_032638.4	368	Cct/Act																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212570095	212570095	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	40	402	0	ENST00000342788.4:c.1146A>T	p.Glu382Asp	p.E382D	ENST00000342788	NM_005235.2	382	gaA/gaT																																																																															
KDR	3791	MSKCC	GRCh37	4	55961050	55961050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	28	485	0	ENST00000263923.4:c.2890G>T	p.Asp964Tyr	p.D964Y	ENST00000263923	NM_002253.2	964	Gac/Tac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417433	139417433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	21	812	2	ENST00000277541.6:c.611G>A	p.Cys204Tyr	p.C204Y	ENST00000277541	NM_017617.3	204	tGc/tAc																																																																															
TEK	7010	MSKCC	GRCh37	9	27183462	27183463	+	missense_variant	Missense_Mutation	DNP	CA	CA	AC			P-0077405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	36	432	0	ENST00000380036.4:c.1036_1037delinsAC	p.Gln346Thr	p.Q346T	ENST00000380036	NM_000459.3	346	CAg/ACg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123217378	123217378	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	25	329	0	ENST00000218089.9:c.3032T>A	p.Leu1011His	p.L1011H	ENST00000218089	NM_001042749.1	1011	cTt/cAt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11205059	11205059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	264	440	2	ENST00000361445.4:c.4730C>T	p.Ala1577Val	p.A1577V	ENST00000361445	NM_004958.3	1577	gCg/gTg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115263192	115263192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	221	373	0	ENST00000438362.2:c.2158C>T	p.Arg720Cys	p.R720C	ENST00000438362	NM_001242891.1	720	Cgc/Tgc																																																																															
SDHC	6391	MSKCC	GRCh37	1	161298240	161298240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	163	386	0	ENST00000367975.2:c.132G>T	p.Lys44Asn	p.K44N	ENST00000367975	NM_003001.3	44	aaG/aaT																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254623	16254623	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749814808		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	231	454	0	ENST00000375759.3:c.1888C>T	p.Arg630Cys	p.R630C	ENST00000375759	NM_015001.2	630	Cgt/Tgt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740212	162740212	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1219740609		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			857	286	518	1	ENST00000367921.3:c.1414G>A	p.Asp472Asn	p.D472N	ENST00000367921	NM_006182.2	472	Gat/Aat																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748442	162748442	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			952	54	457	0	ENST00000367921.3:c.2356G>T	p.Glu786Ter	p.E786*	ENST00000367921	NM_006182.2	786	Gaa/Taa																																																																															
NUF2	83540	MSKCC	GRCh37	1	163325170	163325170	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144589776		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	166	332	0	ENST00000271452.3:c.1306G>A	p.Gly436Ser	p.G436S	ENST00000271452	NM_145697.2	436	Ggt/Agt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206647813	206647813	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs554685342		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	208	451	0	ENST00000367120.3:c.227C>T	p.Thr76Met	p.T76M	ENST00000367120	NM_014002.3	76	aCg/aTg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206651584	206651584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	280	603	0	ENST00000367120.3:c.894C>A	p.Phe298Leu	p.F298L	ENST00000367120	NM_014002.3	298	ttC/ttA																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716138	243716138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	157	372	0	ENST00000263826.5:c.1056G>T	p.Glu352Asp	p.E352D	ENST00000263826	NM_005465.4	352	gaG/gaT																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736287	243736287	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	226	436	0	ENST00000263826.5:c.760G>T	p.Glu254Ter	p.E254*	ENST00000263826	NM_005465.4	254	Gaa/Taa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243778422	243778422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	125	299	0	ENST00000263826.5:c.603G>T	p.Lys201Asn	p.K201N	ENST00000263826	NM_005465.4	201	aaG/aaT																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246498697	246498697	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143920876		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	164	305	0	ENST00000388985.4:c.308G>A	p.Arg103Gln	p.R103Q	ENST00000388985		103	cGa/cAa																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46531836	46531836	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	162	338	0	ENST00000262741.5:c.511G>T	p.Glu171Ter	p.E171*	ENST00000262741	NM_003629.3	171	Gaa/Taa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65303664	65303664	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763865501		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	157	388	1	ENST00000342505.4:c.3091G>A	p.Asp1031Asn	p.D1031N	ENST00000342505	NM_002227.2	1031	Gat/Aat																																																																															
JAK1	3716	MSKCC	GRCh37	1	65310506	65310506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			754	352	666	0	ENST00000342505.4:c.2182G>A	p.Asp728Asn	p.D728N	ENST00000342505	NM_002227.2	728	Gac/Aac																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429758	78429758	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	156	405	0	ENST00000370768.2:c.1030C>T	p.Arg344Ter	p.R344*	ENST00000370768	NM_003902.3	344	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903763	114903763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			736	156	425	0	ENST00000543371.1:c.767C>T	p.Pro256Leu	p.P256L	ENST00000543371	NM_001198531.1	256	cCg/cTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1422891742		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	267	370	0	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920423	114920423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148050954		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	221	383	0	ENST00000543371.1:c.1364G>A	p.Arg455Gln	p.R455Q	ENST00000543371	NM_001198531.1	455	cGa/cAa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851828	63851828	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201944744		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	299	568	0	ENST00000279873.7:c.2606C>A	p.Ser869Tyr	p.S869Y	ENST00000279873	NM_032199.2	869	tCt/tAt																																																																															
TET1	80312	MSKCC	GRCh37	10	70405608	70405608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	61	428	0	ENST00000373644.4:c.3122G>A	p.Arg1041Lys	p.R1041K	ENST00000373644	NM_030625.2	1041	aGa/aAa																																																																															
TET1	80312	MSKCC	GRCh37	10	70405915	70405915	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1430579993		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	213	467	0	ENST00000373644.4:c.3429G>T	p.Lys1143Asn	p.K1143N	ENST00000373644	NM_030625.2	1143	aaG/aaT																																																																															
TET1	80312	MSKCC	GRCh37	10	70406003	70406003	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1006076006		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	226	482	0	ENST00000373644.4:c.3517C>T	p.Arg1173Trp	p.R1173W	ENST00000373644	NM_030625.2	1173	Cgg/Tgg																																																																															
TET1	80312	MSKCC	GRCh37	10	70406732	70406732	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs768683199		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	161	393	0	ENST00000373644.4:c.4246G>T	p.Asp1416Tyr	p.D1416Y	ENST00000373644	NM_030625.2	1416	Gat/Tat																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	86	334	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
PGR	5241	MSKCC	GRCh37	11	100933477	100933477	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	208	306	0	ENST00000325455.5:c.1913A>C	p.Lys638Thr	p.K638T	ENST00000325455	NM_001202474.3	638	aAa/aCa																																																																															
ATM	472	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs772821016		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	107	389	0	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108153601	108153601	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	99	257	0	ENST00000278616.4:c.3741C>A	p.Phe1247Leu	p.F1247L	ENST00000278616	NM_000051.3	1247	ttC/ttA																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342507	118342507	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	187	473	0	ENST00000534358.1:c.633G>T	p.Lys211Asn	p.K211N	ENST00000534358	NM_005933.3	211	aaG/aaT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344458	118344458	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			891	181	598	0	ENST00000534358.1:c.2584C>T	p.Arg862Ter	p.R862*	ENST00000534358	NM_005933.3	862	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118371736	118371736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	220	392	0	ENST00000534358.1:c.6193C>T	p.Arg2065Cys	p.R2065C	ENST00000534358	NM_005933.3	2065	Cgc/Tgc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118371737	118371737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	242	384	1	ENST00000534358.1:c.6194G>A	p.Arg2065His	p.R2065H	ENST00000534358	NM_005933.3	2065	cGc/cAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118372513	118372513	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782124549		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			838	345	558	0	ENST00000534358.1:c.6446G>A	p.Arg2149Gln	p.R2149Q	ENST00000534358	NM_005933.3	2149	cGa/cAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374648	118374648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	299	581	0	ENST00000534358.1:c.8041G>A	p.Asp2681Asn	p.D2681N	ENST00000534358	NM_005933.3	2681	Gac/Aac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376266	118376266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			752	316	630	0	ENST00000534358.1:c.9659G>A	p.Gly3220Glu	p.G3220E	ENST00000534358	NM_005933.3	3220	gGa/gAa																																																																															
CBL	867	MSKCC	GRCh37	11	119169179	119169179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150811339		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			800	296	526	0	ENST00000264033.4:c.2363G>A	p.Arg788Gln	p.R788Q	ENST00000264033	NM_005188.3	788	cGa/cAa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944498	71944498	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			754	172	518	0	ENST00000298229.2:c.2054T>C	p.Val685Ala	p.V685A	ENST00000298229	NM_001567.3	685	gTg/gCg																																																																															
LMO1	4004	MSKCC	GRCh37	11	8246247	8246247	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	242	483	0	ENST00000335790.3:c.387C>A	p.Phe129Leu	p.F129L	ENST00000335790	NM_002315.2	129	ttC/ttA																																																																															
SETD8	387893	MSKCC	GRCh37	12	123880918	123880918	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148212570		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	198	410	0	ENST00000330479.4:c.536G>A	p.Arg179His	p.R179H	ENST00000330479	NM_020382.3	179	cGc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519945		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	271	489	0	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552613	18552613	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1371859788		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	154	385	0	ENST00000266497.5:c.2024G>T	p.Arg675Ile	p.R675I	ENST00000266497		675	aGa/aTa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552630	18552630	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200787716		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	135	451	0	ENST00000266497.5:c.2041C>T	p.Arg681Cys	p.R681C	ENST00000266497		681	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	160	335	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs770248150		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	183	369	0	ENST00000256078.4:c.351A>C	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaC																																																																															
KDM5A	5927	MSKCC	GRCh37	12	419064	419064	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	126	428	0	ENST00000399788.2:c.3283G>T	p.Glu1095Ter	p.E1095*	ENST00000399788	NM_001042603.1	1095	Gaa/Taa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233110	46233110	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	156	295	0	ENST00000334344.6:c.1331-2A>G		p.X444_splice	ENST00000334344	NM_152641.2	444																																																																																
SMARCD1	6602	MSKCC	GRCh37	12	50481162	50481162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	226	423	0	ENST00000394963.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000394963	NM_003076.4	183	cGa/cAa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858600	57858600	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756282060		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	304	559	1	ENST00000228682.2:c.338G>A	p.Arg113Gln	p.R113Q	ENST00000228682	NM_005269.2	113	cGa/cAa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514637	103514637	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1246763212		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			847	210	541	0	ENST00000355739.4:c.1138G>A	p.Glu380Lys	p.E380K	ENST00000355739	NM_000123.3	380	Gaa/Aaa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518992	103518992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	202	425	0	ENST00000355739.4:c.2330G>A	p.Arg777His	p.R777H	ENST00000355739	NM_000123.3	777	cGc/cAc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549116	21549116	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			718	264	559	0	ENST00000382592.4:c.3160C>T	p.Arg1054Ter	p.R1054*	ENST00000382592	NM_014572.2	1054	Cga/Tga																																																																															
CDK8	1024	MSKCC	GRCh37	13	26828867	26828867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	242	528	0	ENST00000381527.3:c.89G>A	p.Gly30Asp	p.G30D	ENST00000381527	NM_001260.1	30	gGc/gAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28880820	28880820	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	241	525	0	ENST00000282397.4:c.3810G>T	p.Lys1270Asn	p.K1270N	ENST00000282397	NM_002019.4	1270	aaG/aaT																																																																															
FLT1	2321	MSKCC	GRCh37	13	28880861	28880861	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199599880		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			799	216	541	0	ENST00000282397.4:c.3769C>T	p.Arg1257Cys	p.R1257C	ENST00000282397	NM_002019.4	1257	Cgc/Tgc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964125	28964125	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377395740		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	192	418	0	ENST00000282397.4:c.1777C>T	p.Arg593Trp	p.R593W	ENST00000282397	NM_002019.4	593	Cgg/Tgg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134681	41134681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	245	559	0	ENST00000379561.5:c.947G>A	p.Arg316Gln	p.R316Q	ENST00000379561	NM_002015.3	316	cGa/cAa																																																																															
RB1	5925	MSKCC	GRCh37	13	48919244	48919244	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913296		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	127	291	0	ENST00000267163.4:c.409G>T	p.Glu137Ter	p.E137*	ENST00000267163	NM_000321.2	137	Gaa/Taa																																																																															
RB1	5925	MSKCC	GRCh37	13	48954347	48954347	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201458896		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	138	291	0	ENST00000267163.4:c.1468G>A	p.Ala490Thr	p.A490T	ENST00000267163	NM_000321.2	490	Gct/Act																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337723	73337723	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	194	297	0	ENST00000377767.4:c.1993G>T	p.Glu665Ter	p.E665*	ENST00000377767	NM_014953.3	665	Gaa/Taa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346314	73346314	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs575448022		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	140	330	0	ENST00000377767.4:c.1486G>A	p.Glu496Lys	p.E496K	ENST00000377767	NM_014953.3	496	Gaa/Aaa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73347916	73347916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139907646		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	180	423	0	ENST00000377767.4:c.1145G>A	p.Arg382Gln	p.R382Q	ENST00000377767	NM_014953.3	382	cGa/cAa																																																																															
MGA	23269	MSKCC	GRCh37	15	41989110	41989110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			740	55	474	0	ENST00000219905.7:c.1902G>T	p.Lys634Asn	p.K634N	ENST00000219905	NM_001164273.1	634	aaG/aaT																																																																															
MGA	23269	MSKCC	GRCh37	15	42052635	42052635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			871	267	520	0	ENST00000219905.7:c.7306C>T	p.Arg2436Cys	p.R2436C	ENST00000219905	NM_001164273.1	2436	Cgt/Tgt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43705410	43705410	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764425387		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			731	282	588	0	ENST00000382044.4:c.5212G>A	p.Ala1738Thr	p.A1738T	ENST00000382044	NM_001141980.1	1738	Gca/Aca																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724829	43724829	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	175	516	0	ENST00000382044.4:c.3238G>T	p.Glu1080Ter	p.E1080*	ENST00000382044	NM_001141980.1	1080	Gaa/Taa																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51514699	51514699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201842322		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			790	228	503	0	ENST00000260433.2:c.475C>T	p.Arg159Cys	p.R159C	ENST00000260433		159	Cgt/Tgt																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727468	66727468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	245	452	0	ENST00000307102.5:c.184G>A	p.Glu62Lys	p.E62K	ENST00000307102	NM_002755.3	62	Gaa/Aaa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029332	14029332	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866657450		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			688	266	572	0	ENST00000311895.7:c.1543C>T	p.Arg515Cys	p.R515C	ENST00000311895	NM_005236.2	515	Cgt/Tgt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3634797	3634797	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765601038		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			813	329	555	3	ENST00000294008.3:c.4712C>T	p.Thr1571Met	p.T1571M	ENST00000294008	NM_032444.2	1571	aCg/aTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3808916	3808916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			767	211	481	0	ENST00000262367.5:c.3308G>A	p.Arg1103Gln	p.R1103Q	ENST00000262367	NM_004380.2	1103	cGa/cAa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3823757	3823757	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	229	456	0	ENST00000262367.5:c.2458T>C	p.Ser820Pro	p.S820P	ENST00000262367	NM_004380.2	820	Tca/Cca																																																																															
CTCF	10664	MSKCC	GRCh37	16	67650719	67650719	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1131691283		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			843	297	454	0	ENST00000264010.4:c.1024C>T	p.Arg342Cys	p.R342C	ENST00000264010	NM_006565.3	342	Cgt/Tgt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67663406	67663406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775874494		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	210	419	0	ENST00000264010.4:c.1807C>T	p.Arg603Cys	p.R603C	ENST00000264010	NM_006565.3	603	Cgc/Tgc																																																																															
CDH1	999	MSKCC	GRCh37	16	68857307	68857307	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	157	330	0	ENST00000261769.5:c.1942G>T	p.Glu648Ter	p.E648*	ENST00000261769	NM_004360.3	648	Gaa/Taa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827316	72827316	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371948268		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	302	577	0	ENST00000268489.5:c.9265G>A	p.Glu3089Lys	p.E3089K	ENST00000268489	NM_006885.3	3089	Gag/Aag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827575	72827575	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	165	422	0	ENST00000268489.5:c.9006G>T	p.Lys3002Asn	p.K3002N	ENST00000268489	NM_006885.3	3002	aaG/aaT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831456	72831456	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	258	556	0	ENST00000268489.5:c.5125G>T	p.Glu1709Ter	p.E1709*	ENST00000268489	NM_006885.3	1709	Gag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832013	72832013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			786	180	537	0	ENST00000268489.5:c.4568G>T	p.Arg1523Ile	p.R1523I	ENST00000268489	NM_006885.3	1523	aGa/aTa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845844	72845844	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760400785		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			774	298	549	0	ENST00000268489.5:c.3623C>T	p.Ser1208Leu	p.S1208L	ENST00000268489	NM_006885.3	1208	tCg/tTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81888120	81888120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199638859		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	288	464	0	ENST00000359376.3:c.265C>T	p.Arg89Cys	p.R89C	ENST00000359376	NM_002661.3	89	Cgc/Tgc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81973613	81973613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	218	464	0	ENST00000359376.3:c.3430G>A	p.Asp1144Asn	p.D1144N	ENST00000359376	NM_002661.3	1144	Gat/Aat																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943632	9943632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			923	57	440	0	ENST00000330684.3:c.1309C>T	p.Arg437Trp	p.R437W	ENST00000330684	NM_001134407.1	437	Cgg/Tgg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984702	11984702	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	103	233	0	ENST00000353533.5:c.248C>A	p.Ser83Ter	p.S83*	ENST00000353533	NM_003010.3	83	tCa/tAa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16049769	16049769	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	213	362	0	ENST00000268712.3:c.1003G>T	p.Glu335Ter	p.E335*	ENST00000268712	NM_006311.3	335	Gaa/Taa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16097786	16097786	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201037902		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	197	379	0	ENST00000268712.3:c.98G>A	p.Arg33His	p.R33H	ENST00000268712	NM_006311.3	33	cGc/cAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29556292	29556292	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1251621684		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			702	147	465	2	ENST00000358273.4:c.2659G>A	p.Ala887Thr	p.A887T	ENST00000358273	NM_001042492.2	887	Gca/Aca																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37882875	37882875	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778243900		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	137	539	0	ENST00000269571.5:c.2933G>A	p.Arg978His	p.R978H	ENST00000269571		978	cGc/cAc																																																																															
RARA	5914	MSKCC	GRCh37	17	38510570	38510572	+	missense_variant	Missense_Mutation	ONP	CGC	CGC	TGT			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	146	435	0	ENST00000254066.5:c.824_826delinsTGT	p.Thr275_Arg276delinsMetTrp	p.T275_R276delinsMW	ENST00000254066	NM_000964.3	275	aCGCgg/aTGTgg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243774	41243774	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs431825399		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	171	520	0	ENST00000357654.3:c.3774G>T	p.Glu1258Asp	p.E1258D	ENST00000357654	NM_007294.3	1258	gaG/gaT																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246636	41246636	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	187	509	0	ENST00000357654.3:c.912C>A	p.Phe304Leu	p.F304L	ENST00000357654	NM_007294.3	304	ttC/ttA																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58701094	58701094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	186	360	0	ENST00000305921.3:c.685G>A	p.Glu229Lys	p.E229K	ENST00000305921	NM_003620.3	229	Gaa/Aaa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761219	59761219	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs575998972		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	108	502	0	ENST00000259008.2:c.3188C>T	p.Ser1063Leu	p.S1063L	ENST00000259008	NM_032043.2	1063	tCg/tTg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63526198	63526198	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140344858		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			777	319	487	0	ENST00000307078.5:c.2428G>A	p.Asp810Asn	p.D810N	ENST00000307078	NM_004655.3	810	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577077	7577077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			851	279	542	0	ENST00000269305.4:c.861G>T	p.Glu287Asp	p.E287D	ENST00000269305	NM_001126112.2	287	gaG/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs730882026		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			870	31	430	0	ENST00000269305.4:c.707A>C	p.Tyr236Ser	p.Y236S	ENST00000269305	NM_001126112.2	236	tAc/tCc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7976107	7976107	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	214	451	0	ENST00000319144.4:c.2088G>T	p.Glu696Asp	p.E696D	ENST00000319144	NM_001139.2	696	gaG/gaT																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604736	48604736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	258	495	0	ENST00000342988.3:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000342988	NM_005359.5	520	Gaa/Taa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56412897	56412897	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	144	271	0	ENST00000348428.3:c.1912-1G>T		p.X638_splice	ENST00000348428	NM_006785.3	638																																																																																
YES1	7525	MSKCC	GRCh37	18	743317	743317	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	134	393	0	ENST00000314574.4:c.823G>T	p.Glu275Ter	p.E275*	ENST00000314574	NM_005433.3	275	Gaa/Taa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276615	15276615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			734	278	577	0	ENST00000263388.2:c.5650G>A	p.Ala1884Thr	p.A1884T	ENST00000263388	NM_000435.2	1884	Gcc/Acc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296181	15296181	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144935367		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	274	681	0	ENST00000263388.2:c.2183G>A	p.Arg728His	p.R728H	ENST00000263388	NM_000435.2	728	cGc/cAc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353959	15353959	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1354137520		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	92	241	0	ENST00000263377.2:c.2921C>T	p.Pro974Leu	p.P974L	ENST00000263377	NM_058243.2	974	cCg/cTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955074	17955074	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			764	213	523	0	ENST00000458235.1:c.153G>T	p.Glu51Asp	p.E51D	ENST00000458235	NM_000215.3	51	gaG/gaT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210808	36210808	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			764	257	664	1	ENST00000222270.7:c.559G>T	p.Glu187Ter	p.E187*	ENST00000222270	NM_014727.1	187	Gaa/Taa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211883	36211883	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202218975		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			780	277	653	0	ENST00000222270.7:c.1634G>A	p.Arg545Gln	p.R545Q	ENST00000222270	NM_014727.1	545	cGa/cAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229290	36229290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			934	204	715	0	ENST00000222270.7:c.7980C>A	p.Phe2660Leu	p.F2660L	ENST00000222270	NM_014727.1	2660	ttC/ttA																																																																															
ERF	2077	MSKCC	GRCh37	19	42754535	42754535	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745819984		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	232	579	0	ENST00000222329.4:c.205G>A	p.Val69Ile	p.V69I	ENST00000222329	NM_006494.2	69	Gtt/Att																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905267	50905267	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs969950434		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			753	308	653	0	ENST00000440232.2:c.475G>A	p.Glu159Lys	p.E159K	ENST00000440232	NM_002691.3	159	Gag/Aag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210541	5210541	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1440460687		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			818	290	655	2	ENST00000357368.4:c.5426C>T	p.Pro1809Leu	p.P1809L	ENST00000357368	NM_002850.3	1809	cCg/cTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7172322	7172322	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757322264		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			760	269	438	0	ENST00000302850.5:c.1247G>A	p.Arg416Gln	p.R416Q	ENST00000302850	NM_000208.2	416	cGa/cAa																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128044351	128044351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200098409		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			725	265	541	0	ENST00000285398.2:c.1270G>A	p.Glu424Lys	p.E424K	ENST00000285398	NM_000122.1	424	Gag/Aag																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082317	16082317	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519919		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	268	646	0	ENST00000281043.3:c.131C>T	p.Pro44Leu	p.P44L	ENST00000281043	NM_005378.4	44	cCc/cTc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190656563	190656563	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1367090018		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	177	353	0	ENST00000441310.2:c.28C>T	p.Arg10Ter	p.R10*	ENST00000441310	NM_000534.4	10	Cga/Tga																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198272772	198272772	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1360040192		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	200	375	0	ENST00000335508.6:c.1189C>T	p.Arg397Cys	p.R397C	ENST00000335508	NM_012433.2	397	Cgc/Tgc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251610	212251610	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1187421880		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			718	288	511	0	ENST00000342788.4:c.3449A>G	p.Tyr1150Cys	p.Y1150C	ENST00000342788	NM_005235.2	1150	tAc/tGc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295800	212295800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1024245860		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	154	367	0	ENST00000342788.4:c.2513G>A	p.Arg838Gln	p.R838Q	ENST00000342788	NM_005235.2	838	cGa/cAa																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371596	225371596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	145	398	1	ENST00000264414.4:c.1008G>T	p.Lys336Asn	p.K336N	ENST00000264414	NM_003590.4	336	aaG/aaT																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965013	25965013	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs190294224		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			791	175	518	2	ENST00000435504.4:c.4193C>T	p.Ser1398Leu	p.S1398L	ENST00000435504		1398	tCg/tTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25973038	25973038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			752	255	508	0	ENST00000435504.4:c.1387C>T	p.Pro463Ser	p.P463S	ENST00000435504		463	Ccc/Tcc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068393	26068393	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	126	236	2	ENST00000435504.4:c.97G>T	p.Glu33Ter	p.E33*	ENST00000435504		33	Gaa/Taa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39294788	39294788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	170	327	0	ENST00000402219.2:c.194G>A	p.Arg65Gln	p.R65Q	ENST00000402219	NM_005633.3	65	cGa/cAa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47698180	47698180	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs63751411		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	27	349	0	ENST00000233146.2:c.1738G>T	p.Glu580Ter	p.E580*	ENST00000233146	NM_000251.2	580	Gaa/Taa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47705445	47705445	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs63751477		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	183	399	0	ENST00000233146.2:c.2245G>A	p.Glu749Lys	p.E749K	ENST00000233146	NM_000251.2	749	Gaa/Aaa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61726905	61726905	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	56	385	0	ENST00000401558.2:c.533T>C	p.Val178Ala	p.V178A	ENST00000401558	NM_003400.3	178	gTa/gCa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022987	31022987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			718	266	549	0	ENST00000375687.4:c.2472G>T	p.Glu824Asp	p.E824D	ENST00000375687	NM_015338.5	824	gaG/gaT																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023162	31023162	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	279	559	1	ENST00000375687.4:c.2647G>T	p.Glu883Ter	p.E883*	ENST00000375687	NM_015338.5	883	Gaa/Taa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743943	40743943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs763964405		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	264	436	1	ENST00000373198.4:c.3052C>T	p.Arg1018Ter	p.R1018*	ENST00000373198	NM_133170.3	1018	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827911	40827911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	237	572	0	ENST00000373198.4:c.2517C>A	p.Phe839Leu	p.F839L	ENST00000373198	NM_133170.3	839	ttC/ttA																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46262828	46262828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148666287		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	159	424	0	ENST00000371998.3:c.1001G>A	p.Arg334Gln	p.R334Q	ENST00000371998		334	cGa/cAa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46262906	46262906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	205	371	0	ENST00000371998.3:c.1079G>A	p.Arg360Gln	p.R360Q	ENST00000371998		360	cGa/cAa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46268503	46268503	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777114269		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			791	301	591	0	ENST00000371998.3:c.2890C>T	p.Arg964Trp	p.R964W	ENST00000371998		964	Cgg/Tgg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484414	57484414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			774	167	449	0	ENST00000371085.3:c.595C>T	p.Arg199Cys	p.R199C	ENST00000371085	NM_000516.4	199	Cgc/Tgc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538382	9538382	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	215	369	0	ENST00000353224.5:c.1617-1G>T		p.X539_splice	ENST00000353224	NM_177990.2	539																																																																																
SMARCB1	6598	MSKCC	GRCh37	22	24159001	24159001	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768379745		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			809	197	524	0	ENST00000263121.7:c.673G>A	p.Asp225Asn	p.D225N	ENST00000263121	NM_003073.3	225	Gat/Aat																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29090089	29090089	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs764396738		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	12	81	0	ENST00000328354.6:c.1392G>T	p.Lys464Asn	p.K464N	ENST00000328354	NM_007194.3	464	aaG/aaT																																																																															
RAF1	5894	MSKCC	GRCh37	3	12641905	12641905	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs755926381		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	255	459	0	ENST00000251849.4:c.844C>T	p.Arg282Ter	p.R282*	ENST00000251849	NM_002880.3	282	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670282	134670282	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748807854		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	222	525	0	ENST00000398015.3:c.193G>A	p.Glu65Lys	p.E65K	ENST00000398015	NM_004441.4	65	Gag/Aag																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998141	169998141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1428010723		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	241	407	0	ENST00000295797.4:c.832C>T	p.Arg278Cys	p.R278C	ENST00000295797	NM_002740.5	278	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	189	420	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	161	372	0	ENST00000263967.3:c.333G>T	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaT																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185181425	185181425	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1435276633		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	167	372	0	ENST00000265026.3:c.1366C>T	p.Arg456Ter	p.R456*	ENST00000265026	NM_004721.4	456	Cga/Tga																																																																															
TP63	8626	MSKCC	GRCh37	3	189612029	189612029	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368336834		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	212	452	0	ENST00000264731.3:c.1781G>A	p.Arg594Gln	p.R594Q	ENST00000264731	NM_003722.4	594	cGa/cAa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41268766	41268766	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	193	383	0	ENST00000349496.5:c.1004A>T	p.Lys335Ile	p.K335I	ENST00000349496	NM_001904.3	335	aAa/aTa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277291	41277291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	366	402	0	ENST00000349496.5:c.1760G>A	p.Arg587Gln	p.R587Q	ENST00000349496	NM_001904.3	587	cGa/cAa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	245	481	0	ENST00000349496.5:c.1982G>A	p.Arg661Gln	p.R661Q	ENST00000349496	NM_001904.3	661	cGa/cAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163041	47163041	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	190	427	0	ENST00000409792.3:c.3085G>T	p.Glu1029Ter	p.E1029*	ENST00000409792	NM_014159.6	1029	Gaa/Taa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164118	47164118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	175	359	0	ENST00000409792.3:c.2008G>T	p.Glu670Ter	p.E670*	ENST00000409792	NM_014159.6	670	Gaa/Taa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164927	47164927	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1186063799		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	228	501	0	ENST00000409792.3:c.1199G>A	p.Arg400Gln	p.R400Q	ENST00000409792	NM_014159.6	400	cGa/cAa																																																																															
MST1	4485	MSKCC	GRCh37	3	49723076	49723076	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1223154186		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	62	95	0	ENST00000449682.2:c.1340C>T	p.Thr447Met	p.T447M	ENST00000449682	NM_020998.3	447	aCg/aTg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49929220	49929220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147999292		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			787	293	583	2	ENST00000296474.3:c.3323G>A	p.Arg1108Gln	p.R1108Q	ENST00000296474	NM_002447.2	1108	cGa/cAa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	197	402	0	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71090635	71090635	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765483458		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	248	471	0	ENST00000318789.4:c.713C>T	p.Ala238Val	p.A238V	ENST00000318789	NM_032682.5	238	gCt/gTt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390072	89390072	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765502894		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	168	373	0	ENST00000336596.2:c.821G>A	p.Arg274Gln	p.R274Q	ENST00000336596	NM_005233.5	274	cGa/cAa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390125	89390125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	204	441	0	ENST00000336596.2:c.874C>T	p.Pro292Ser	p.P292S	ENST00000336596	NM_005233.5	292	Cct/Tct																																																																															
TET2	54790	MSKCC	GRCh37	4	106157424	106157424	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	229	512	0	ENST00000380013.4:c.2325C>A	p.Phe775Leu	p.F775L	ENST00000380013	NM_001127208.2	775	ttC/ttA																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143094812	143094812	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	137	345	0	ENST00000262992.4:c.1332G>T	p.Lys444Asn	p.K444N	ENST00000262992	NM_001101669.1	444	aaG/aaT																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1941423	1941423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1189008609		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	285	430	0	ENST00000382895.3:c.1799G>A	p.Arg600Gln	p.R600Q	ENST00000382895	NM_133330.2	600	cGa/cAa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55151650	55151650	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	36	286	0	ENST00000257290.5:c.2436A>C	p.Lys812Asn	p.K812N	ENST00000257290	NM_006206.4	812	aaA/aaC																																																																															
KDR	3791	MSKCC	GRCh37	4	55955592	55955592	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs560674167		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	178	407	0	ENST00000263923.4:c.3353G>A	p.Arg1118Gln	p.R1118Q	ENST00000263923	NM_002253.2	1118	cGa/cAa																																																																															
REST	5978	MSKCC	GRCh37	4	57777356	57777356	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			714	287	459	0	ENST00000309042.7:c.552G>T	p.Lys184Asn	p.K184N	ENST00000309042	NM_005612.4	184	aaG/aaT																																																																															
REST	5978	MSKCC	GRCh37	4	57796730	57796730	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			758	260	543	0	ENST00000309042.7:c.1706A>C	p.Lys569Thr	p.K569T	ENST00000309042	NM_005612.4	569	aAa/aCa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356152	66356152	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370633345		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			804	228	474	0	ENST00000273854.3:c.1345G>A	p.Asp449Asn	p.D449N	ENST00000273854	NM_004439.5	449	Gac/Aac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467765	66467765	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	147	412	0	ENST00000273854.3:c.504A>C	p.Glu168Asp	p.E168D	ENST00000273854	NM_004439.5	168	gaA/gaC																																																																															
ALB	213	MSKCC	GRCh37	4	74279174	74279174	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774294755		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	170	450	0	ENST00000295897.4:c.881C>T	p.Ser294Leu	p.S294L	ENST00000295897	NM_000477.5	294	tCg/tTg																																																																															
ALB	213	MSKCC	GRCh37	4	74283258	74283258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs78575701		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	198	330	0	ENST00000295897.4:c.1300C>T	p.Arg434Cys	p.R434C	ENST00000295897	NM_000477.5	434	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112102982	112102982	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201764637		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	135	431	0	ENST00000257430.4:c.317G>A	p.Arg106His	p.R106H	ENST00000257430	NM_000038.5	106	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112177049	112177049	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	159	529	1	ENST00000257430.4:c.5758C>T	p.Arg1920Ter	p.R1920*	ENST00000257430	NM_000038.5	1920	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112177901	112177901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs752654519		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	193	461	0	ENST00000257430.4:c.6610C>T	p.Arg2204Ter	p.R2204*	ENST00000257430	NM_000038.5	2204	Cga/Tga																																																																															
RAD50	10111	MSKCC	GRCh37	5	131923334	131923334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	35	338	0	ENST00000265335.6:c.837G>T	p.Lys279Asn	p.K279N	ENST00000265335		279	aaG/aaT																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562133	176562133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			753	177	524	0	ENST00000439151.2:c.29G>T	p.Arg10Ile	p.R10I	ENST00000439151	NM_022455.4	10	aGa/aTa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176673712	176673712	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751194525		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	221	318	1	ENST00000439151.2:c.4412G>A	p.Arg1471Gln	p.R1471Q	ENST00000439151	NM_022455.4	1471	cGa/cAa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176678848	176678848	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764613088		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	270	482	0	ENST00000439151.2:c.4759C>T	p.Arg1587Cys	p.R1587C	ENST00000439151	NM_022455.4	1587	Cgc/Tgc																																																																															
SDHA	6389	MSKCC	GRCh37	5	228306	228306	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs775143272		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	112	239	0	ENST00000264932.6:c.628C>T	p.Arg210Ter	p.R210*	ENST00000264932	NM_004168.2	210	Cga/Tga																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31504699	31504699	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1032572786		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	156	435	0	ENST00000344624.3:c.1631G>A	p.Arg544His	p.R544H	ENST00000344624		544	cGc/cAc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871249	35871249	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	104	348	0	ENST00000303115.3:c.471G>T	p.Lys157Asn	p.K157N	ENST00000303115	NM_002185.3	157	aaG/aaT																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181765	56181765	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1287268127		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	186	319	0	ENST00000399503.3:c.3989C>T	p.Ser1330Leu	p.S1330L	ENST00000399503	NM_005921.1	1330	tCg/tTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592030	67592030	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	230	436	0	ENST00000274335.5:c.1846T>G	p.Leu616Val	p.L616V	ENST00000274335		616	Ttg/Gtg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79952236	79952236	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	197	441	0	ENST00000265081.6:c.244G>T	p.Glu82Ter	p.E82*	ENST00000265081	NM_002439.4	82	Gaa/Taa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79968171	79968171	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	94	426	0	ENST00000265081.6:c.901G>T	p.Gly301Ter	p.G301*	ENST00000265081	NM_002439.4	301	Gga/Tga																																																																															
MSH3	4437	MSKCC	GRCh37	5	80071522	80071522	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	86	304	0	ENST00000265081.6:c.2263G>T	p.Glu755Ter	p.E755*	ENST00000265081	NM_002439.4	755	Gaa/Taa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86670680	86670680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	189	311	0	ENST00000274376.6:c.1958G>T	p.Arg653Ile	p.R653I	ENST00000274376	NM_002890.2	653	aGa/aTa																																																																															
FYN	2534	MSKCC	GRCh37	6	112024169	112024169	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1465963577		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	146	424	1	ENST00000368678.4:c.616C>T	p.Arg206Cys	p.R206C	ENST00000368678		206	Cgc/Tgc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265484	152265484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs909211388		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	269	466	0	ENST00000206249.3:c.937G>A	p.Asp313Asn	p.D313N	ENST00000206249	NM_000125.3	313	Gac/Aac																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522598	157522598	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			736	244	494	0	ENST00000346085.5:c.4870C>T	p.Arg1624Ter	p.R1624*	ENST00000346085	NM_020732.3	1624	Cga/Tga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168665	32168665	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	270	508	0	ENST00000375023.3:c.4258G>T	p.Ala1420Ser	p.A1420S	ENST00000375023	NM_004557.3	1420	Gcc/Tcc																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64286793	64286793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	157	292	0	ENST00000370651.3:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000370651	NM_003463.4	3	cGa/cAa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520027	106520027	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370034420		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	144	352	0	ENST00000359195.3:c.2455G>A	p.Asp819Asn	p.D819N	ENST00000359195	NM_002649.2	819	Gat/Aat																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520088	106520088	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1484305297		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	146	269	0	ENST00000359195.3:c.2516G>A	p.Arg839His	p.R839H	ENST00000359195	NM_002649.2	839	cGc/cAc																																																																															
SMO	6608	MSKCC	GRCh37	7	128846206	128846206	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761081288		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			767	277	585	0	ENST00000249373.3:c.1136C>T	p.Ala379Val	p.A379V	ENST00000249373	NM_005631.4	379	gCg/gTg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148504761	148504761	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397515548		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	157	375	0	ENST00000320356.2:c.2233G>A	p.Glu745Lys	p.E745K	ENST00000320356	NM_004456.4	745	Gaa/Aaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845367	151845367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	317	569	0	ENST00000262189.6:c.13645C>T	p.Arg4549Cys	p.R4549C	ENST00000262189	NM_170606.2	4549	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151851177	151851177	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141966811		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			775	43	453	0	ENST00000262189.6:c.12194C>T	p.Ala4065Val	p.A4065V	ENST00000262189	NM_170606.2	4065	gCg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151871282	151871282	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1295108695		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	98	339	1	ENST00000262189.6:c.9308C>T	p.Ala3103Val	p.A3103V	ENST00000262189	NM_170606.2	3103	gCc/gTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873942	151873942	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	212	489	0	ENST00000262189.6:c.8596G>T	p.Glu2866Ter	p.E2866*	ENST00000262189	NM_170606.2	2866	Gaa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884466	151884466	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1435892915		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	224	420	0	ENST00000262189.6:c.4889C>T	p.Ser1630Leu	p.S1630L	ENST00000262189	NM_170606.2	1630	tCg/tTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976706	2976706	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1044557293		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	175	495	1	ENST00000396946.4:c.1306C>T	p.Arg436Trp	p.R436W	ENST00000396946	NM_032415.4	436	Cgg/Tgg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739866	41739866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			739	189	536	0	ENST00000242208.4:c.107C>A	p.Pro36Gln	p.P36Q	ENST00000242208	NM_002192.2	36	cCg/cAg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444323	50444323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	312	575	0	ENST00000331340.3:c.253C>T	p.Leu85Phe	p.L85F	ENST00000331340	NM_006060.4	85	Ctt/Ttt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55211049	55211049	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	175	503	0	ENST00000275493.2:c.292C>T	p.Arg98Ter	p.R98*	ENST00000275493	NM_005228.3	98	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268059	55268059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			728	333	576	0	ENST00000275493.2:c.2899G>A	p.Glu967Lys	p.E967K	ENST00000275493	NM_005228.3	967	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273030	55273030	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773996588		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			912	258	536	1	ENST00000275493.2:c.3353C>T	p.Ala1118Val	p.A1118V	ENST00000275493	NM_005228.3	1118	gCg/gTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81336624	81336624	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771437724		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	115	315	0	ENST00000222390.5:c.1598G>A	p.Arg533Gln	p.R533Q	ENST00000222390	NM_000601.4	533	cGa/cAa																																																																															
CDK6	1021	MSKCC	GRCh37	7	92404119	92404119	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761377867		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	135	402	0	ENST00000265734.4:c.260G>A	p.Arg87Gln	p.R87Q	ENST00000265734	NM_001259.6	87	cGa/cAa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117859879	117859879	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	235	405	0	ENST00000297338.2:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000297338	NM_006265.2	586	Cga/Tga																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38282070	38282070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			699	286	590	0	ENST00000425967.3:c.986G>A	p.Ser329Asn	p.S329N	ENST00000425967	NM_001174067.1	329	aGc/aAc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978590	70978590	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	247	522	0	ENST00000276594.2:c.1063G>T	p.Glu355Ter	p.E355*	ENST00000276594	NM_024504.3	355	Gag/Tag																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127915943	127915943	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781486938		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	79	396	0	ENST00000373547.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000373547	NM_002721.4	180	Gaa/Aaa																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300872	137300872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			752	220	548	0	ENST00000481739.1:c.517G>A	p.Asp173Asn	p.D173N	ENST00000481739	NM_002957.4	173	Gac/Aac																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564074	139564074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773216266		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	158	458	0	ENST00000308874.7:c.214G>A	p.Ala72Thr	p.A72T	ENST00000308874		72	Gcc/Acc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2191349	2191349	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs747368303		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			961	89	568	0	ENST00000349721.2:c.4678C>T	p.Arg1560Ter	p.R1560*	ENST00000349721	NM_003070.3	1560	Cga/Tga																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882090	36882090	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35077960		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	241	453	3	ENST00000358127.4:c.923C>T	p.Ala308Val	p.A308V	ENST00000358127	NM_001280556.1	308	gCg/gTg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054649	5054649	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373174105		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	167	412	0	ENST00000381652.3:c.701G>A	p.Arg234His	p.R234H	ENST00000381652	NM_004972.3	234	cGc/cAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504333	8504333	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754609275		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	201	457	0	ENST00000356435.5:c.1750C>T	p.Arg584Cys	p.R584C	ENST00000356435		584	Cgt/Tgt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8523518	8523518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	203	438	0	ENST00000356435.5:c.686G>A	p.Arg229Gln	p.R229Q	ENST00000356435		229	cGa/cAa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231072	98231072	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	274	478	1	ENST00000331920.6:c.2211G>T	p.Glu737Asp	p.E737D	ENST00000331920	NM_000264.3	737	gaG/gaT																																																																															
XIAP	331	MSKCC	GRCh37	X	123019576	123019576	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	213	365	0	ENST00000355640.3:c.64G>T	p.Glu22Ter	p.E22*	ENST00000355640		22	Gaa/Taa																																																																															
XIAP	331	MSKCC	GRCh37	X	123020225	123020225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	184	468	0	ENST00000355640.3:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000355640		238	cGa/cAa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123159736	123159736	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1251136516		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	141	322	0	ENST00000218089.9:c.91G>A	p.Glu31Lys	p.E31K	ENST00000218089	NM_001042749.1	31	Gaa/Aaa																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123499637	123499637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	155	308	0	ENST00000371139.4:c.164G>A	p.Arg55Gln	p.R55Q	ENST00000371139	NM_001114937.2	55	cGa/cAa																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321286	1321286	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780766655		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	266	530	0	ENST00000381566.1:c.469G>A	p.Asp157Asn	p.D157N	ENST00000381566		157	Gac/Aac																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15838385	15838385	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs775221448		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	156	330	0	ENST00000307771.7:c.883C>T	p.Arg295Ter	p.R295*	ENST00000307771	NM_005089.3	295	Cga/Tga																																																																															
BCOR	54880	MSKCC	GRCh37	X	39914723	39914723	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	253	437	0	ENST00000378444.4:c.4639C>T	p.Arg1547Ter	p.R1547*	ENST00000378444	NM_001123385.1	1547	Cga/Tga																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923796	39923796	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs779083606		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	259	503	0	ENST00000378444.4:c.3295G>T	p.Asp1099Tyr	p.D1099Y	ENST00000378444	NM_001123385.1	1099	Gat/Tat																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933752	39933752	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367848648		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			774	273	662	0	ENST00000378444.4:c.847G>A	p.Ala283Thr	p.A283T	ENST00000378444	NM_001123385.1	283	Gca/Aca																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934420	39934420	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202121665		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	211	499	0	ENST00000378444.4:c.179C>T	p.Thr60Met	p.T60M	ENST00000378444	NM_001123385.1	60	aCg/aTg																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650833	48650833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	311	657	0	ENST00000376670.3:c.702G>A	p.Met234Ile	p.M234I	ENST00000376670	NM_002049.3	234	atG/atA																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53244011	53244011	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377276125		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	197	424	0	ENST00000375401.3:c.982C>T	p.Arg328Trp	p.R328W	ENST00000375401	NM_004187.3	328	Cgg/Tgg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53250046	53250046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			845	179	496	0	ENST00000375401.3:c.203G>A	p.Arg68Gln	p.R68Q	ENST00000375401	NM_004187.3	68	cGa/cAa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411131	63411131	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777453882		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	246	632	0	ENST00000330258.3:c.2036G>A	p.Arg679Gln	p.R679Q	ENST00000330258	NM_152424.3	679	cGg/cAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411444	63411444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			773	227	668	0	ENST00000330258.3:c.1723C>T	p.Arg575Trp	p.R575W	ENST00000330258	NM_152424.3	575	Cgg/Tgg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412200	63412200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			732	220	690	0	ENST00000330258.3:c.967G>A	p.Asp323Asn	p.D323N	ENST00000330258	NM_152424.3	323	Gat/Aat																																																																															
ATRX	546	MSKCC	GRCh37	X	76814238	76814238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	158	316	0	ENST00000373344.5:c.6406G>A	p.Asp2136Asn	p.D2136N	ENST00000373344	NM_000489.3	2136	Gac/Aac																																																																															
ATRX	546	MSKCC	GRCh37	X	76829806	76829806	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	138	297	0	ENST00000373344.5:c.6235C>T	p.Arg2079Ter	p.R2079*	ENST00000373344	NM_000489.3	2079	Cga/Tga																																																																															
ATRX	546	MSKCC	GRCh37	X	76912075	76912075	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782228142		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	167	321	1	ENST00000373344.5:c.4189G>A	p.Glu1397Lys	p.E1397K	ENST00000373344	NM_000489.3	1397	Gaa/Aaa																																																																															
ATRX	546	MSKCC	GRCh37	X	76938406	76938406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	179	400	0	ENST00000373344.5:c.2342G>A	p.Arg781Gln	p.R781Q	ENST00000373344	NM_000489.3	781	cGa/cAa																																																																															
ATRX	546	MSKCC	GRCh37	X	76938681	76938681	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	181	478	0	ENST00000373344.5:c.2067A>C	p.Gln689His	p.Q689H	ENST00000373344	NM_000489.3	689	caA/caC																																																																															
ATRX	546	MSKCC	GRCh37	X	76940025	76940025	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	65	369	0	ENST00000373344.5:c.723G>T	p.Lys241Asn	p.K241N	ENST00000373344	NM_000489.3	241	aaG/aaT																																																																															
MTOR	2475	MSKCC	GRCh37	1	11169711	11169711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	182	370	0	ENST00000361445.4:c.7442C>T	p.Ser2481Phe	p.S2481F	ENST00000361445	NM_004958.3	2481	tCt/tTt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11194412	11194412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	231	461	0	ENST00000361445.4:c.5242G>A	p.Ala1748Thr	p.A1748T	ENST00000361445	NM_004958.3	1748	Gcc/Acc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11300474	11300474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			744	288	617	0	ENST00000361445.4:c.1672C>T	p.Pro558Ser	p.P558S	ENST00000361445	NM_004958.3	558	Ccc/Tcc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11307995	11307995	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	226	521	0	ENST00000361445.4:c.997C>A	p.Leu333Met	p.L333M	ENST00000361445	NM_004958.3	333	Ctg/Atg																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166276	118166276	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			818	341	620	0	ENST00000369448.3:c.786A>C	p.Glu262Asp	p.E262D	ENST00000369448	NM_017709.3	262	gaA/gaC																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150919425	150919425	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			768	293	475	0	ENST00000271640.5:c.1204A>C	p.Lys402Gln	p.K402Q	ENST00000271640	NM_001145415.1	402	Aaa/Caa																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150931697	150931697	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			799	216	447	0	ENST00000271640.5:c.2374T>C	p.Cys792Arg	p.C792R	ENST00000271640	NM_001145415.1	792	Tgc/Cgc																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150933080	150933080	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs770075488		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	268	459	0	ENST00000271640.5:c.2542G>T	p.Glu848Ter	p.E848*	ENST00000271640	NM_001145415.1	848	Gaa/Taa																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150935529	150935529	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767499693		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			732	284	527	0	ENST00000271640.5:c.3371C>T	p.Ser1124Leu	p.S1124L	ENST00000271640	NM_001145415.1	1124	tCg/tTg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936730	150936730	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1395729846		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			775	274	527	0	ENST00000271640.5:c.3766C>T	p.Arg1256Trp	p.R1256W	ENST00000271640	NM_001145415.1	1256	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254699	16254699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	205	465	0	ENST00000375759.3:c.1964G>A	p.Arg655Lys	p.R655K	ENST00000375759	NM_015001.2	655	aGa/aAa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256870	16256870	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760111274		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			959	94	480	0	ENST00000375759.3:c.4135C>T	p.Pro1379Ser	p.P1379S	ENST00000375759	NM_015001.2	1379	Cct/Tct																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262232	16262232	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	244	581	1	ENST00000375759.3:c.9497T>C	p.Val3166Ala	p.V3166A	ENST00000375759	NM_015001.2	3166	gTc/gCc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163309254	163309254	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	30	367	0	ENST00000271452.3:c.593T>G	p.Phe198Cys	p.F198C	ENST00000271452	NM_145697.2	198	tTt/tGt																																																																															
GNB1	2782	MSKCC	GRCh37	1	1720647	1720647	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			773	281	542	0	ENST00000378609.4:c.761A>C	p.Asp254Ala	p.D254A	ENST00000378609	NM_002074.3	254	gAc/gCc																																																																															
GNB1	2782	MSKCC	GRCh37	1	1756834	1756834	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	233	300	0	ENST00000378609.4:c.57+2T>C		p.X19_splice	ENST00000378609	NM_002074.3	19																																																																																
MDM4	4194	MSKCC	GRCh37	1	204511941	204511941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	157	397	0	ENST00000367182.3:c.541G>T	p.Asp181Tyr	p.D181Y	ENST00000367182	NM_001278516.1	181	Gat/Tat																																																																															
CDC42	998	MSKCC	GRCh37	1	22408239	22408239	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	145	360	0	ENST00000344548.3:c.130G>T	p.Val44Phe	p.V44F	ENST00000344548	NM_001039802.1	44	Gtt/Ttt																																																																															
PARP1	142	MSKCC	GRCh37	1	226573289	226573289	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	264	497	0	ENST00000366794.5:c.927T>G	p.Tyr309Ter	p.Y309*	ENST00000366794	NM_001618.3	309	taT/taG																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230486772	230486772	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	158	484	0	ENST00000525115.1:c.619C>T	p.Arg207Ter	p.R207*	ENST00000525115		207	Cga/Tga																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488806	231488806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	169	414	0	ENST00000295050.7:c.1169C>T	p.Ser390Phe	p.S390F	ENST00000295050	NM_032018.5	390	tCt/tTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27102149	27102149	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	248	470	0	ENST00000324856.7:c.5075A>C	p.Asn1692Thr	p.N1692T	ENST00000324856	NM_006015.4	1692	aAc/aCc																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363632	40363632	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			722	194	393	0	ENST00000397332.2:c.597A>C	p.Glu199Asp	p.E199D	ENST00000397332	NM_001033082.2	199	gaA/gaC																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45799112	45799112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			794	281	667	0	ENST00000372115.3:c.279G>T	p.Glu93Asp	p.E93D	ENST00000372115	NM_001048171.1	93	gaG/gaT																																																																															
JAK1	3716	MSKCC	GRCh37	1	65301132	65301132	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	174	384	0	ENST00000342505.4:c.3316A>C	p.Asn1106His	p.N1106H	ENST00000342505	NM_002227.2	1106	Aat/Cat																																																																															
JAK1	3716	MSKCC	GRCh37	1	65304258	65304258	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	120	403	0	ENST00000342505.4:c.2857A>C	p.Lys953Gln	p.K953Q	ENST00000342505	NM_002227.2	953	Aag/Cag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925606	114925606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs529966412		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	293	594	0	ENST00000543371.1:c.1684G>A	p.Ala562Thr	p.A562T	ENST00000543371	NM_001198531.1	562	Gct/Act																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274787	123274787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	271	498	0	ENST00000358487.5:c.1131G>T	p.Glu377Asp	p.E377D	ENST00000358487	NM_000141.4	377	gaG/gaT																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851123	63851123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	179	550	0	ENST00000279873.7:c.1901G>A	p.Gly634Asp	p.G634D	ENST00000279873	NM_032199.2	634	gGc/gAc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851182	63851182	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	244	559	0	ENST00000279873.7:c.1960T>C	p.Phe654Leu	p.F654L	ENST00000279873	NM_032199.2	654	Ttt/Ctt																																																																															
TET1	80312	MSKCC	GRCh37	10	70332929	70332929	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	240	510	0	ENST00000373644.4:c.834A>C	p.Glu278Asp	p.E278D	ENST00000373644	NM_030625.2	278	gaA/gaC																																																																															
TET1	80312	MSKCC	GRCh37	10	70446252	70446252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			748	320	468	0	ENST00000373644.4:c.5192C>A	p.Ser1731Tyr	p.S1731Y	ENST00000373644	NM_030625.2	1731	tCt/tAt																																																																															
TET1	80312	MSKCC	GRCh37	10	70450645	70450645	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			873	72	500	0	ENST00000373644.4:c.5488del	p.Thr1830LeufsTer4	p.T1830Lfs*4	ENST00000373644	NM_030625.2	1829	Aaa/aa																																																																															
YAP1	10413	MSKCC	GRCh37	11	102056793	102056793	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	99	308	0	ENST00000282441.5:c.733G>T	p.Glu245Ter	p.E245*	ENST00000282441	NM_001130145.2	245	Gaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108124599	108124599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	135	348	0	ENST00000278616.4:c.1957C>T	p.Leu653Phe	p.L653F	ENST00000278616	NM_000051.3	653	Ctt/Ttt																																																																															
ATM	472	MSKCC	GRCh37	11	108155185	108155185	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs778123057		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	154	379	0	ENST00000278616.4:c.3978C>A	p.Asn1326Lys	p.N1326K	ENST00000278616	NM_000051.3	1326	aaC/aaA																																																																															
ATM	472	MSKCC	GRCh37	11	108158349	108158349	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	159	364	0	ENST00000278616.4:c.4016A>C	p.Asn1339Thr	p.N1339T	ENST00000278616	NM_000051.3	1339	aAt/aCt																																																																															
ATM	472	MSKCC	GRCh37	11	108170489	108170489	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs879254191		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	163	357	0	ENST00000278616.4:c.5054C>T	p.Thr1685Ile	p.T1685I	ENST00000278616	NM_000051.3	1685	aCc/aTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344455	118344455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			848	232	584	1	ENST00000534358.1:c.2581G>T	p.Asp861Tyr	p.D861Y	ENST00000534358	NM_005933.3	861	Gat/Tat																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118377300	118377300	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			724	269	482	0	ENST00000534358.1:c.10693A>G	p.Thr3565Ala	p.T3565A	ENST00000534358	NM_005933.3	3565	Acc/Gcc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456474	32456474	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	140	411	0	ENST00000332351.3:c.418A>C	p.Ile140Leu	p.I140L	ENST00000332351	NM_024426.4	140	Atc/Ctc																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594985	47594985	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1316498254		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			755	342	596	0	ENST00000395288.2:c.1054C>T	p.Arg352Cys	p.R352C	ENST00000395288	NM_016506.5	352	Cgc/Tgc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77070058	77070058	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			778	71	386	0	ENST00000356341.3:c.482T>G	p.Val161Gly	p.V161G	ENST00000356341	NM_002576.4	161	gTg/gGg																																																																															
GAB2	9846	MSKCC	GRCh37	11	77937612	77937612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	163	464	0	ENST00000361507.4:c.1106C>T	p.Pro369Leu	p.P369L	ENST00000361507	NM_080491.2	369	cCt/cTt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94153304	94153304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	84	229	0	ENST00000323929.3:c.2114G>T	p.Arg705Ile	p.R705I	ENST00000323929	NM_005591.3	705	aGa/aTa																																																																															
RAB35	11021	MSKCC	GRCh37	12	120535063	120535064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			727	175	464	0	ENST00000229340.5:c.591dup	p.Lys198GlufsTer282	p.K198Efs*282	ENST00000229340	NM_006861.6	197	-/G																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431416	121431416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	291	573	0	ENST00000257555.6:c.620G>A	p.Gly207Asp	p.G207D	ENST00000257555		207	gGc/gAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133256213	133256213	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs775815329		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	259	421	0	ENST00000320574.5:c.448C>T	p.Arg150Ter	p.R150*	ENST00000320574	NM_006231.2	150	Cga/Tga																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793401	18793401	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	173	382	0	ENST00000266497.5:c.4098A>C	p.Glu1366Asp	p.E1366D	ENST00000266497		1366	gaA/gaC																																																																															
RECQL	5965	MSKCC	GRCh37	12	21624031	21624031	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	24	296	0	ENST00000421138.2:c.1669G>T	p.Glu557Ter	p.E557*	ENST00000421138		557	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25362793	25362793	+	3_prime_UTR_variant	3'UTR	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	32	340	0	ENST00000256078.4:c.*57A>G			ENST00000256078	NM_033360.2																																																																																	
KDM5A	5927	MSKCC	GRCh37	12	432777	432777	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			819	166	498	0	ENST00000399788.2:c.2139G>T	p.Lys713Asn	p.K713N	ENST00000399788	NM_001042603.1	713	aaG/aaT																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245268	46245268	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			750	310	590	0	ENST00000334344.6:c.3362T>C	p.Leu1121Ser	p.L1121S	ENST00000334344	NM_152641.2	1121	tTg/tCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49423197	49423197	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	270	494	0	ENST00000301067.7:c.14062A>G	p.Thr4688Ala	p.T4688A	ENST00000301067	NM_003482.3	4688	Act/Gct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424758	49424758	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs762369936		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			836	207	673	0	ENST00000301067.7:c.13589A>G	p.Asp4530Gly	p.D4530G	ENST00000301067	NM_003482.3	4530	gAc/gGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432431	49432431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			794	312	629	0	ENST00000301067.7:c.8708G>T	p.Arg2903Ile	p.R2903I	ENST00000301067	NM_003482.3	2903	aGa/aTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437523	49437523	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755651886		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			753	332	621	0	ENST00000301067.7:c.5362G>A	p.Ala1788Thr	p.A1788T	ENST00000301067	NM_003482.3	1788	Gcc/Acc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861814	57861814	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs913592640		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			803	304	582	0	ENST00000228682.2:c.1115G>A	p.Arg372His	p.R372H	ENST00000228682	NM_005269.2	372	cGc/cAc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28626809	28626809	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			706	51	317	0	ENST00000241453.7:c.487A>G	p.Thr163Ala	p.T163A	ENST00000241453	NM_004119.2	163	Acc/Gcc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911055	32911055	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1174270999		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	174	456	0	ENST00000380152.3:c.2563A>G	p.Thr855Ala	p.T855A	ENST00000380152		855	Aca/Gca																																																																															
RB1	5925	MSKCC	GRCh37	13	48941659	48941659	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	35	233	0	ENST00000267163.4:c.969A>C	p.Glu323Asp	p.E323D	ENST00000267163	NM_000321.2	323	gaA/gaC																																																																															
RB1	5925	MSKCC	GRCh37	13	49039218	49039218	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	168	333	0	ENST00000267163.4:c.2296A>G	p.Thr766Ala	p.T766A	ENST00000267163	NM_000321.2	766	Aca/Gca																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068926	30068926	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	188	371	0	ENST00000331968.5:c.2003A>G	p.Glu668Gly	p.E668G	ENST00000331968	NM_002742.2	668	gAa/gGa																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68353833	68353833	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	219	376	0	ENST00000487270.1:c.668A>G	p.Gln223Arg	p.Q223R	ENST00000487270	NM_133509.3	223	cAa/cGa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560476	95560476	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	189	482	0	ENST00000343455.3:c.5113G>T	p.Glu1705Ter	p.E1705*	ENST00000343455	NM_177438.2	1705	Gaa/Taa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562341	95562341	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1350329738		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			733	240	592	1	ENST00000343455.3:c.4916A>G	p.Tyr1639Cys	p.Y1639C	ENST00000343455	NM_177438.2	1639	tAt/tGt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562692	95562692	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			736	261	531	0	ENST00000343455.3:c.4565A>C	p.Asp1522Ala	p.D1522A	ENST00000343455	NM_177438.2	1522	gAc/gCc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95590616	95590616	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	224	406	0	ENST00000343455.3:c.1293G>T	p.Glu431Asp	p.E431D	ENST00000343455	NM_177438.2	431	gaG/gaT																																																																															
MGA	23269	MSKCC	GRCh37	15	42002957	42002957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	158	399	0	ENST00000219905.7:c.2494G>A	p.Glu832Lys	p.E832K	ENST00000219905	NM_001164273.1	832	Gaa/Aaa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701237	43701237	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			798	227	543	0	ENST00000382044.4:c.5458T>C	p.Tyr1820His	p.Y1820H	ENST00000382044	NM_001141980.1	1820	Tac/Cac																																																																															
USP8	9101	MSKCC	GRCh37	15	50757246	50757246	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	166	391	0	ENST00000307179.4:c.544G>A	p.Ala182Thr	p.A182T	ENST00000307179		182	Gca/Aca																																																																															
USP8	9101	MSKCC	GRCh37	15	50757289	50757289	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs937524145		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	63	279	0	ENST00000307179.4:c.587A>C	p.Asn196Thr	p.N196T	ENST00000307179		196	aAc/aCc																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51510770	51510770	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	162	383	0	ENST00000260433.2:c.711T>G	p.Ile237Met	p.I237M	ENST00000260433		237	atT/atG																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482812	67482812	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			796	196	595	0	ENST00000327367.4:c.1216T>C	p.Trp406Arg	p.W406R	ENST00000327367	NM_005902.3	406	Tgg/Cgg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434756	99434756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	234	443	0	ENST00000268035.6:c.843C>A	p.Phe281Leu	p.F281L	ENST00000268035	NM_000875.3	281	ttC/ttA																																																																															
CYLD	1540	MSKCC	GRCh37	16	50816295	50816295	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			767	71	395	0	ENST00000398568.2:c.1735G>T	p.Glu579Ter	p.E579*	ENST00000398568	NM_001042412.1	579	Gaa/Taa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50826572	50826572	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	32	245	0	ENST00000398568.2:c.2297T>A	p.Ile766Asn	p.I766N	ENST00000398568	NM_001042412.1	766	aTt/aAt																																																																															
CDH1	999	MSKCC	GRCh37	16	68863618	68863618	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			804	225	463	0	ENST00000261769.5:c.2357A>G	p.Asp786Gly	p.D786G	ENST00000261769	NM_004360.3	786	gAc/gGc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829992	72829992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			711	332	514	0	ENST00000268489.5:c.6589C>A	p.Leu2197Ile	p.L2197I	ENST00000268489	NM_006885.3	2197	Ctc/Atc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832139	72832139	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	218	566	0	ENST00000268489.5:c.4442T>C	p.Leu1481Pro	p.L1481P	ENST00000268489	NM_006885.3	1481	cTg/cCg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81904514	81904514	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	151	271	0	ENST00000359376.3:c.622A>C	p.Lys208Gln	p.K208Q	ENST00000359376	NM_002661.3	208	Aaa/Caa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89869751	89869751	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	198	321	0	ENST00000389301.3:c.710-2A>G		p.X237_splice	ENST00000389301	NM_000135.2	237																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9857535	9857535	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	239	538	0	ENST00000330684.3:c.3866A>C	p.Gln1289Pro	p.Q1289P	ENST00000330684	NM_001134407.1	1289	cAg/cCg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961326	15961326	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			755	205	486	4	ENST00000268712.3:c.6063G>T	p.Gln2021His	p.Q2021H	ENST00000268712	NM_006311.3	2021	caG/caT																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15975480	15975480	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	168	346	0	ENST00000268712.3:c.3874T>G	p.Leu1292Val	p.L1292V	ENST00000268712	NM_006311.3	1292	Ttg/Gtg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30303600	30303600	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			35	12	13	0	ENST00000322652.5:c.884T>G	p.Phe295Cys	p.F295C	ENST00000322652	NM_015355.2	295	tTt/tGt																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40369249	40369249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			765	236	441	0	ENST00000293328.3:c.1309G>A	p.Glu437Lys	p.E437K	ENST00000293328	NM_012448.3	437	Gaa/Aaa																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40456653	40456653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	295	519	0	ENST00000345506.4:c.1363C>T	p.Leu455Phe	p.L455F	ENST00000345506	NM_003152.3	455	Ctt/Ttt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40474348	40474348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			718	230	535	0	ENST00000264657.5:c.2053A>C	p.Lys685Gln	p.K685Q	ENST00000264657	NM_139276.2	685	Aag/Cag																																																																															
STAT3	6774	MSKCC	GRCh37	17	40486025	40486025	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	280	452	0	ENST00000264657.5:c.840A>C	p.Gln280His	p.Q280H	ENST00000264657	NM_139276.2	280	caA/caC																																																																															
BRCA1	672	MSKCC	GRCh37	17	41209070	41209070	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	270	464	0	ENST00000357654.3:c.5276A>C	p.Lys1759Thr	p.K1759T	ENST00000357654	NM_007294.3	1759	aAg/aCg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246134	41246134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	169	457	0	ENST00000357654.3:c.1414C>T	p.Pro472Ser	p.P472S	ENST00000357654	NM_007294.3	472	Ccc/Tcc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41256138	41256138	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs397509172		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	192	288	0	ENST00000357654.3:c.441+1G>A		p.X147_splice	ENST00000357654	NM_007294.3	147																																																																																
PPM1D	8493	MSKCC	GRCh37	17	58678242	58678242	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	259	518	0	ENST00000305921.3:c.467A>C	p.Lys156Thr	p.K156T	ENST00000305921	NM_003620.3	156	aAa/aCa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59926586	59926586	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	133	340	0	ENST00000259008.2:c.411G>T	p.Lys137Asn	p.K137N	ENST00000259008	NM_032043.2	137	aaG/aaT																																																																															
MALT1	10892	MSKCC	GRCh37	18	56409132	56409132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	120	292	0	ENST00000348428.3:c.1639G>A	p.Ala547Thr	p.A547T	ENST00000348428	NM_006785.3	547	Gct/Act																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61306528	61306528	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	207	481	0	ENST00000341074.5:c.659A>G	p.Asn220Ser	p.N220S	ENST00000341074	NM_002974.2	220	aAt/aGt																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61310738	61310738	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs55883719		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			36	13	21	0	ENST00000341074.5:c.74A>G	p.Asn25Ser	p.N25S	ENST00000341074	NM_002974.2	25	aAc/aGc																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61328308	61328308	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	153	398	0	ENST00000283752.5:c.143A>G	p.Asn48Ser	p.N48S	ENST00000283752	NM_006919.2	48	aAc/aGc																																																																															
YES1	7525	MSKCC	GRCh37	18	746013	746013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	167	364	0	ENST00000314574.4:c.509G>A	p.Arg170Lys	p.R170K	ENST00000314574	NM_005433.3	170	aGa/aAa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10252767	10252767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	276	591	0	ENST00000340748.4:c.3198G>T	p.Glu1066Asp	p.E1066D	ENST00000340748		1066	gaG/gaT																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262196	10262196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	262	616	0	ENST00000340748.4:c.2095G>A	p.Ala699Thr	p.A699T	ENST00000340748		699	Gca/Aca																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10279010	10279010	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	223	331	0	ENST00000340748.4:c.751G>T	p.Glu251Ter	p.E251*	ENST00000340748		251	Gaa/Taa																																																																															
CARM1	10498	MSKCC	GRCh37	19	11027425	11027425	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			767	209	511	0	ENST00000327064.4:c.992T>C	p.Val331Ala	p.V331A	ENST00000327064	NM_199141.1	331	gTg/gCg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135025	11135025	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	222	457	0	ENST00000344626.4:c.2992T>C	p.Cys998Arg	p.C998R	ENST00000344626	NM_003072.3	998	Tgc/Cgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15280950	15280950	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1228942056		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			750	166	589	0	ENST00000263388.2:c.5146G>T	p.Glu1716Ter	p.E1716*	ENST00000263388	NM_000435.2	1716	Gag/Tag																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308428	30308428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	242	454	0	ENST00000262643.3:c.442C>A	p.Leu148Ile	p.L148I	ENST00000262643	NM_001238.2	148	Ctt/Att																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313188	30313188	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	246	522	0	ENST00000262643.3:c.882T>G	p.Phe294Leu	p.F294L	ENST00000262643	NM_001238.2	294	ttT/ttG																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313229	30313229	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779222474		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	203	546	0	ENST00000262643.3:c.923C>T	p.Ser308Leu	p.S308L	ENST00000262643	NM_001238.2	308	tCg/tTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216181	36216181	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1229348459		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			755	263	607	1	ENST00000222270.7:c.3589C>T	p.Pro1197Ser	p.P1197S	ENST00000222270	NM_014727.1	1197	Cca/Tca																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422780	47422780	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779738931		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			758	146	438	1	ENST00000404338.3:c.848G>A	p.Arg283His	p.R283H	ENST00000404338	NM_004491.4	283	cGc/cAc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423997	47423997	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1485725369		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			779	228	565	0	ENST00000404338.3:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000404338	NM_004491.4	689	Cgg/Tgg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50916720	50916720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	249	558	0	ENST00000440232.2:c.2192C>T	p.Thr731Ile	p.T731I	ENST00000440232	NM_002691.3	731	aCc/aTc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158617520	158617520	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			773	290	542	0	ENST00000263640.3:c.1136A>C	p.Lys379Thr	p.K379T	ENST00000263640	NM_001105.4	379	aAg/aCg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096619	178096620	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	137	456	0	ENST00000397062.3:c.711dup	p.Glu238ArgfsTer4	p.E238Rfs*4	ENST00000397062	NM_006164.4	237	-/A																																																																															
PMS1	5378	MSKCC	GRCh37	2	190682837	190682837	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1169211820		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	149	283	0	ENST00000441310.2:c.513G>T	p.Lys171Asn	p.K171N	ENST00000441310	NM_000534.4	171	aaG/aaT																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198265142	198265142	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	244	457	0	ENST00000335508.6:c.2735A>C	p.Asn912Thr	p.N912T	ENST00000335508	NM_012433.2	912	aAc/aCc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212652786	212652786	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	159	434	0	ENST00000342788.4:c.520A>G	p.Asn174Asp	p.N174D	ENST00000342788	NM_005235.2	174	Aac/Gac																																																																															
BARD1	580	MSKCC	GRCh37	2	215617176	215617176	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587782122		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	98	323	0	ENST00000260947.4:c.1672T>C	p.Ser558Pro	p.S558P	ENST00000260947	NM_000465.2	558	Tca/Cca																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794908	242794908	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777782930		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	179	604	0	ENST00000334409.5:c.301C>T	p.Pro101Ser	p.P101S	ENST00000334409	NM_005018.2	101	Ccc/Tcc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213071	39213071	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			780	269	533	0	ENST00000402219.2:c.3896C>A	p.Ser1299Tyr	p.S1299Y	ENST00000402219	NM_005633.3	1299	tCt/tAt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39250031	39250031	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	32	377	0	ENST00000402219.2:c.1538C>A	p.Ala513Asp	p.A513D	ENST00000402219	NM_005633.3	513	gCt/gAt																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47607045	47607045	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			709	233	425	0	ENST00000263735.4:c.795A>C	p.Lys265Asn	p.K265N	ENST00000263735	NM_002354.2	265	aaA/aaC																																																																															
REL	5966	MSKCC	GRCh37	2	61148933	61148933	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	211	459	0	ENST00000295025.8:c.1123G>T	p.Glu375Ter	p.E375*	ENST00000295025	NM_002908.2	375	Gaa/Taa																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630520	67630520	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1425489565		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	143	362	0	ENST00000272342.5:c.706C>T	p.Gln236Ter	p.Q236*	ENST00000272342	NM_019002.3	236	Cag/Tag																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630712	67630712	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749680104		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	153	471	0	ENST00000272342.5:c.898G>A	p.Glu300Lys	p.E300K	ENST00000272342	NM_019002.3	300	Gaa/Aaa																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630725	67630725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	130	457	0	ENST00000272342.5:c.911C>T	p.Ala304Val	p.A304V	ENST00000272342	NM_019002.3	304	gCt/gTt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99169392	99169392	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs982751951		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	294	528	2	ENST00000074304.5:c.1322C>T	p.Ala441Val	p.A441V	ENST00000074304	NM_001134224.1	441	gCc/gTc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31016028	31016028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			820	314	576	1	ENST00000375687.4:c.350G>A	p.Ser117Asn	p.S117N	ENST00000375687	NM_015338.5	117	aGc/aAc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39728707	39728707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	170	328	0	ENST00000361337.2:c.987G>T	p.Glu329Asp	p.E329D	ENST00000361337	NM_003286.2	329	gaG/gaT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730786	40730786	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			714	189	559	0	ENST00000373198.4:c.3749A>G	p.Tyr1250Cys	p.Y1250C	ENST00000373198	NM_133170.3	1250	tAc/tGc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790026	40790026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			773	201	511	0	ENST00000373198.4:c.2705G>T	p.Arg902Ile	p.R902I	ENST00000373198	NM_133170.3	902	aGa/aTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877370	40877370	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	186	465	1	ENST00000373198.4:c.2326T>C	p.Phe776Leu	p.F776L	ENST00000373198	NM_133170.3	776	Ttc/Ctc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46267852	46267852	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			732	40	422	0	ENST00000371998.3:c.2613A>C	p.Lys871Asn	p.K871N	ENST00000371998		871	aaA/aaC																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46281156	46281156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	211	476	0	ENST00000371998.3:c.3953G>A	p.Gly1318Glu	p.G1318E	ENST00000371998		1318	gGa/gAa																																																																															
AURKA	6790	MSKCC	GRCh37	20	54963216	54963216	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	123	316	0	ENST00000312783.6:c.38T>C	p.Val13Ala	p.V13A	ENST00000312783	NM_198436.1	13	gTt/gCt																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62298865	62298865	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs776356655		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	276	519	0	ENST00000482936.1:c.658G>A	p.Asp220Asn	p.D220N	ENST00000482936		220	Gac/Aac																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21346555	21346555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			742	202	611	0	ENST00000215739.8:c.1046C>T	p.Thr349Ile	p.T349I	ENST00000215739	NM_006767.3	349	aCc/aTc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21350398	21350398	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762991620		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	167	494	0	ENST00000215739.8:c.2216C>T	p.Ser739Leu	p.S739L	ENST00000215739	NM_006767.3	739	tCg/tTg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121046	29121046	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	40	396	0	ENST00000328354.6:c.511A>C	p.Asn171His	p.N171H	ENST00000328354	NM_007194.3	171	Aat/Cat																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445299	29445299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			835	258	629	0	ENST00000544604.2:c.1130C>T	p.Ala377Val	p.A377V	ENST00000544604	NM_001206998.1	377	gCc/gTc																																																																															
NF2	4771	MSKCC	GRCh37	22	30050683	30050683	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			735	205	497	0	ENST00000338641.4:c.485T>G	p.Phe162Cys	p.F162C	ENST00000338641	NM_000268.3	162	tTt/tGt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138376558	138376558	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	184	373	0	ENST00000289153.2:c.2916A>C	p.Lys972Asn	p.K972N	ENST00000289153	NM_006219.2	972	aaA/aaC																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138426128	138426128	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	134	333	0	ENST00000289153.2:c.1403A>G	p.Glu468Gly	p.E468G	ENST00000289153	NM_006219.2	468	gAa/gGa																																																																															
ATR	545	MSKCC	GRCh37	3	142232388	142232388	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1207964627		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	34	452	0	ENST00000350721.4:c.4596T>G	p.Ile1532Met	p.I1532M	ENST00000350721	NM_001184.3	1532	atT/atG																																																																															
ATR	545	MSKCC	GRCh37	3	142253926	142253926	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	26	319	0	ENST00000350721.4:c.3941A>C	p.Asn1314Thr	p.N1314T	ENST00000350721	NM_001184.3	1314	aAt/aCt																																																																															
ATR	545	MSKCC	GRCh37	3	142259850	142259850	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587777851		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	202	390	0	ENST00000350721.4:c.3477G>T	p.Met1159Ile	p.M1159I	ENST00000350721	NM_001184.3	1159	atG/atT																																																																															
ATR	545	MSKCC	GRCh37	3	142281781	142281781	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	188	423	1	ENST00000350721.4:c.463G>T	p.Asp155Tyr	p.D155Y	ENST00000350721	NM_001184.3	155	Gac/Tac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917513	178917513	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs778808375		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	131	355	0	ENST00000263967.3:c.388A>G	p.Met130Val	p.M130V	ENST00000263967	NM_006218.2	130	Atg/Gtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921562	178921562	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	117	325	0	ENST00000263967.3:c.1044T>G	p.Ile348Met	p.I348M	ENST00000263967	NM_006218.2	348	atT/atG																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713581	30713581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			688	254	552	0	ENST00000359013.4:c.981G>T	p.Glu327Asp	p.E327D	ENST00000359013	NM_001024847.2	327	gaG/gaT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125364	47125364	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	228	523	0	ENST00000409792.3:c.5906A>C	p.Lys1969Thr	p.K1969T	ENST00000409792	NM_014159.6	1969	aAa/aCa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162491	47162491	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	134	500	0	ENST00000409792.3:c.3635T>C	p.Val1212Ala	p.V1212A	ENST00000409792	NM_014159.6	1212	gTc/gCc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643739	52643739	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	35	420	0	ENST00000394830.3:c.2157A>C	p.Gln719His	p.Q719H	ENST00000394830	NM_018313.4	719	caA/caC																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678762	52678762	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	140	260	0	ENST00000394830.3:c.857A>G	p.Glu286Gly	p.E286G	ENST00000394830	NM_018313.4	286	gAa/gGa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682401	52682401	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	144	370	0	ENST00000394830.3:c.772A>C	p.Asn258His	p.N258H	ENST00000394830	NM_018313.4	258	Aat/Cat																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63968064	63968064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	199	416	0	ENST00000295900.6:c.955G>A	p.Glu319Lys	p.E319K	ENST00000295900	NM_000333.3	319	Gaa/Aaa																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63975994	63975994	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			777	308	555	0	ENST00000295900.6:c.1504G>T	p.Glu502Ter	p.E502*	ENST00000295900	NM_000333.3	502	Gag/Tag																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63976483	63976483	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780603764		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			791	210	499	0	ENST00000295900.6:c.1630C>T	p.Arg544Cys	p.R544C	ENST00000295900	NM_000333.3	544	Cgc/Tgc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981547	63981547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			879	231	638	1	ENST00000295900.6:c.2049G>T	p.Lys683Asn	p.K683N	ENST00000295900	NM_000333.3	683	aaG/aaT																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63982002	63982002	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			809	318	630	0	ENST00000295900.6:c.2504A>C	p.Lys835Thr	p.K835T	ENST00000295900	NM_000333.3	835	aAg/aCg																																																																															
TET2	54790	MSKCC	GRCh37	4	106155586	106155586	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			699	156	501	0	ENST00000380013.4:c.487T>G	p.Phe163Val	p.F163V	ENST00000380013	NM_001127208.2	163	Ttc/Gtc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143033798	143033798	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	160	392	0	ENST00000262992.4:c.2173A>C	p.Met725Leu	p.M725L	ENST00000262992	NM_001101669.1	725	Atg/Ctg																																																																															
GAB1	2549	MSKCC	GRCh37	4	144381531	144381531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	47	387	1	ENST00000262994.4:c.1694C>T	p.Pro565Leu	p.P565L	ENST00000262994	NM_002039.3	565	cCc/cTc																																																																															
GAB1	2549	MSKCC	GRCh37	4	144387255	144387255	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	165	396	0	ENST00000262994.4:c.1804-1G>T		p.X602_splice	ENST00000262994	NM_002039.3	602																																																																																
FAT1	2195	MSKCC	GRCh37	4	187530405	187530405	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			941	243	569	0	ENST00000441802.2:c.10138G>T	p.Gly3380Ter	p.G3380*	ENST00000441802	NM_005245.3	3380	Gga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628775	187628775	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			731	257	550	0	ENST00000441802.2:c.2207T>C	p.Val736Ala	p.V736A	ENST00000441802	NM_005245.3	736	gTa/gCa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1962874	1962874	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			799	45	440	0	ENST00000382895.3:c.3368A>G	p.Asp1123Gly	p.D1123G	ENST00000382895	NM_133330.2	1123	gAc/gGc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1977068	1977068	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			745	293	484	0	ENST00000382895.3:c.3562A>C	p.Lys1188Gln	p.K1188Q	ENST00000382895	NM_133330.2	1188	Aaa/Caa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55140751	55140751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			714	253	384	1	ENST00000257290.5:c.1612G>A	p.Val538Met	p.V538M	ENST00000257290	NM_006206.4	538	Gtg/Atg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144673	55144673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			745	64	429	0	ENST00000257290.5:c.2147G>T	p.Ser716Ile	p.S716I	ENST00000257290	NM_006206.4	716	aGc/aTc																																																																															
REST	5978	MSKCC	GRCh37	4	57796436	57796436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	209	516	0	ENST00000309042.7:c.1412G>T	p.Arg471Ile	p.R471I	ENST00000309042	NM_005612.4	471	aGa/aTa																																																																															
REST	5978	MSKCC	GRCh37	4	57797298	57797298	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			986	262	828	0	ENST00000309042.7:c.2274G>T	p.Lys758Asn	p.K758N	ENST00000309042	NM_005612.4	758	aaG/aaT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467622	66467622	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	201	475	0	ENST00000273854.3:c.647A>C	p.Asp216Ala	p.D216A	ENST00000273854	NM_004439.5	216	gAt/gCt																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84388664	84388665	+	missense_variant	Missense_Mutation	DNP	GG	GG	TA			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	115	321	0	ENST00000321945.7:c.623_624delinsTA	p.Ser208Leu	p.S208L	ENST00000321945	NM_139076.2	208	tCC/tTA																																																																															
APC	324	MSKCC	GRCh37	5	112090658	112090658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs878853469		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	147	326	0	ENST00000257430.4:c.71G>A	p.Arg24Gln	p.R24Q	ENST00000257430	NM_000038.5	24	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112173939	112173939	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	262	536	0	ENST00000257430.4:c.2648del	p.Thr883MetfsTer33	p.T883Mfs*33	ENST00000257430	NM_000038.5	883	aCt/at																																																																															
APC	324	MSKCC	GRCh37	5	112174699	112174699	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	118	471	0	ENST00000257430.4:c.3408A>C	p.Glu1136Asp	p.E1136D	ENST00000257430	NM_000038.5	1136	gaA/gaC																																																																															
APC	324	MSKCC	GRCh37	5	112177937	112177937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	186	481	0	ENST00000257430.4:c.6646C>A	p.Pro2216Thr	p.P2216T	ENST00000257430	NM_000038.5	2216	Ccc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112178840	112178840	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	225	521	0	ENST00000257430.4:c.7549T>C	p.Tyr2517His	p.Y2517H	ENST00000257430	NM_000038.5	2517	Tat/Cat																																																																															
RAD50	10111	MSKCC	GRCh37	5	131925322	131925322	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	26	245	0	ENST00000265335.6:c.1246-1G>T		p.X416_splice	ENST00000265335		416																																																																																
PDGFRB	5159	MSKCC	GRCh37	5	149514447	149514447	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			711	318	624	0	ENST00000261799.4:c.497A>G	p.Asp166Gly	p.D166G	ENST00000261799	NM_002609.3	166	gAc/gGc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637714	176637714	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757909532		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	237	553	2	ENST00000439151.2:c.2314G>A	p.Ala772Thr	p.A772T	ENST00000439151	NM_022455.4	772	Gca/Aca																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638806	176638806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	288	471	0	ENST00000439151.2:c.3406G>A	p.Glu1136Lys	p.E1136K	ENST00000439151	NM_022455.4	1136	Gag/Aag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176696632	176696632	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765594077		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	250	483	0	ENST00000439151.2:c.5333G>A	p.Arg1778Gln	p.R1778Q	ENST00000439151	NM_022455.4	1778	cGa/cAa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31409223	31409223	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			728	42	433	0	ENST00000344624.3:c.3794T>G	p.Leu1265Arg	p.L1265R	ENST00000344624		1265	cTt/cGt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31504693	31504693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	167	443	0	ENST00000344624.3:c.1637G>T	p.Gly546Val	p.G546V	ENST00000344624		546	gGa/gTa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39003703	39003703	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	146	383	0	ENST00000357387.3:c.217A>G	p.Ser73Gly	p.S73G	ENST00000357387	NM_152756.3	73	Agt/Ggt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178590	56178590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	212	437	0	ENST00000399503.3:c.3563C>T	p.Ala1188Val	p.A1188V	ENST00000399503	NM_005921.1	1188	gCt/gTt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752335	57752335	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	88	357	0	ENST00000274289.3:c.1238A>C	p.Lys413Thr	p.K413T	ENST00000274289	NM_006622.3	413	aAa/aCa																																																																															
MSH3	4437	MSKCC	GRCh37	5	80064682	80064682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	151	343	0	ENST00000265081.6:c.2113G>T	p.Asp705Tyr	p.D705Y	ENST00000265081	NM_002439.4	705	Gac/Tac																																																																															
MSH3	4437	MSKCC	GRCh37	5	80088572	80088572	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	178	362	0	ENST00000265081.6:c.2564G>T	p.Arg855Ile	p.R855I	ENST00000265081	NM_002439.4	855	aGa/aTa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86648990	86648990	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	31	279	0	ENST00000274376.6:c.1270G>T	p.Asp424Tyr	p.D424Y	ENST00000274376	NM_002890.2	424	Gat/Tat																																																																															
TRIP13	9319	MSKCC	GRCh37	5	908531	908531	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			779	43	479	0	ENST00000166345.3:c.821T>C	p.Ile274Thr	p.I274T	ENST00000166345	NM_004237.3	274	aTc/aCc																																																																															
SESN1	27244	MSKCC	GRCh37	6	109308769	109308769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	101	354	0	ENST00000436639.2:c.1634C>T	p.Ala545Val	p.A545V	ENST00000436639	NM_014454.2	545	gCc/gTc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117680971	117680971	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	126	421	0	ENST00000368508.3:c.3648+1G>A		p.X1216_splice	ENST00000368508	NM_002944.2	1216																																																																																
ROS1	6098	MSKCC	GRCh37	6	117681003	117681003	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	151	434	0	ENST00000368508.3:c.3617T>G	p.Leu1206Arg	p.L1206R	ENST00000368508	NM_002944.2	1206	cTt/cGt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117715849	117715849	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	166	354	0	ENST00000368508.3:c.909G>T	p.Lys303Asn	p.K303N	ENST00000368508	NM_002944.2	303	aaG/aaT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117718123	117718123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	55	415	0	ENST00000368508.3:c.734G>A	p.Arg245Lys	p.R245K	ENST00000368508	NM_002944.2	245	aGa/aAa																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519578	137519578	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	215	452	0	ENST00000367739.4:c.1060G>T	p.Glu354Ter	p.E354*	ENST00000367739	NM_000416.2	354	Gaa/Taa																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137527356	137527356	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	155	352	0	ENST00000367739.4:c.290C>A	p.Ser97Tyr	p.S97Y	ENST00000367739	NM_000416.2	97	tCt/tAt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099915	157099915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	124	525	0	ENST00000346085.5:c.852G>T	p.Gln284His	p.Q284H	ENST00000346085	NM_020732.3	284	caG/caT																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157505393	157505393	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	298	382	0	ENST00000346085.5:c.3374T>G	p.Leu1125Arg	p.L1125R	ENST00000346085	NM_020732.3	1125	cTg/cGg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675650	30675650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			942	50	496	0	ENST00000376406.3:c.2706G>T	p.Glu902Asp	p.E902D	ENST00000376406	NM_014641.2	902	gaG/gaT																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31238048	31238048	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	37	375	0	ENST00000376228.5:c.834G>T	p.Glu278Asp	p.E278D	ENST00000376228	NM_002117.5	278	gaG/gaT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187527	32187527	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			810	327	690	0	ENST00000375023.3:c.1352C>A	p.Ser451Tyr	p.S451Y	ENST00000375023	NM_004557.3	451	tCc/tAc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805857	32805857	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			745	242	673	0	ENST00000374899.4:c.154C>A	p.Leu52Met	p.L52M	ENST00000374899	NM_018833.2	52	Ctg/Atg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120843	94120843	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	147	424	0	ENST00000369303.4:c.208A>G	p.Thr70Ala	p.T70A	ENST00000369303	NM_004440.3	70	Aca/Gca																																																																															
MET	4233	MSKCC	GRCh37	7	116371839	116371839	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	141	422	0	ENST00000397752.3:c.1318A>G	p.Thr440Ala	p.T440A	ENST00000397752	NM_000245.2	440	Aca/Gca																																																																															
POT1	25913	MSKCC	GRCh37	7	124532319	124532319	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	91	314	0	ENST00000357628.3:c.124+1G>T		p.X42_splice	ENST00000357628	NM_015450.2	42																																																																																
BRAF	673	MSKCC	GRCh37	7	140481450	140481450	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	189	385	1	ENST00000288602.6:c.1358C>A	p.Pro453His	p.P453H	ENST00000288602	NM_004333.4	453	cCt/cAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140500195	140500195	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			937	322	574	0	ENST00000288602.6:c.947C>A	p.Ser316Ter	p.S316*	ENST00000288602	NM_004333.4	316	tCa/tAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140534437	140534437	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	239	408	0	ENST00000288602.6:c.476T>G	p.Val159Gly	p.V159G	ENST00000288602	NM_004333.4	159	gTc/gGc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148516695	148516695	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	205	376	0	ENST00000320356.2:c.992A>C	p.Gln331Pro	p.Q331P	ENST00000320356	NM_004456.4	331	cAg/cCg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151848555	151848555	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	217	417	0	ENST00000262189.6:c.12638C>A	p.Ser4213Tyr	p.S4213Y	ENST00000262189	NM_170606.2	4213	tCt/tAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859770	151859770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			767	307	632	0	ENST00000262189.6:c.10892C>T	p.Ala3631Val	p.A3631V	ENST00000262189	NM_170606.2	3631	gCc/gTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860655	151860655	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			869	275	684	0	ENST00000262189.6:c.10007A>G	p.Gln3336Arg	p.Q3336R	ENST00000262189	NM_170606.2	3336	cAa/cGa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891338	151891338	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	48	285	0	ENST00000262189.6:c.4516C>A	p.Leu1506Ile	p.L1506I	ENST00000262189	NM_170606.2	1506	Ctt/Att																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151917710	151917711	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	25	111	0	ENST00000262189.6:c.3609dup	p.Leu1204IlefsTer10	p.L1204Ifs*10	ENST00000262189	NM_170606.2	1203	-/A																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945591	151945591	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	10	112	0	ENST00000262189.6:c.1928T>G	p.Ile643Ser	p.I643S	ENST00000262189	NM_170606.2	643	aTt/aGt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2985474	2985474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	209	413	0	ENST00000396946.4:c.337C>T	p.Arg113Trp	p.R113W	ENST00000396946	NM_032415.4	113	Cgg/Tgg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117869557	117869557	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1358443424		P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	36	364	0	ENST00000297338.2:c.637G>A	p.Asp213Asn	p.D213N	ENST00000297338	NM_006265.2	213	Gat/Aat																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538762	23538762	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	161	471	1	ENST00000380871.4:c.677T>C	p.Val226Ala	p.V226A	ENST00000380871	NM_006167.3	226	gTg/gCg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205107	38205107	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	132	414	0	ENST00000317025.8:c.583G>T	p.Glu195Ter	p.E195*	ENST00000317025	NM_023034.1	195	Gaa/Taa																																																																															
LYN	4067	MSKCC	GRCh37	8	56859013	56859013	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	152	253	0	ENST00000519728.1:c.139G>T	p.Glu47Ter	p.E47*	ENST00000519728	NM_002350.3	47	Gaa/Taa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965393	68965393	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	166	454	0	ENST00000288368.4:c.1005A>C	p.Lys335Asn	p.K335N	ENST00000288368	NM_024870.2	335	aaA/aaC																																																																															
NBN	4683	MSKCC	GRCh37	8	90967578	90967578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	99	353	0	ENST00000265433.3:c.1330G>T	p.Asp444Tyr	p.D444Y	ENST00000265433	NM_002485.4	444	Gat/Tat																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127912158	127912158	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	58	410	0	ENST00000373547.4:c.712C>A	p.Gln238Lys	p.Q238K	ENST00000373547	NM_002721.4	238	Caa/Aaa																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128201234	128201234	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			729	186	562	0	ENST00000265960.3:c.1501A>G	p.Lys501Glu	p.K501E	ENST00000265960	NM_001006617.1	501	Aaa/Gaa																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2076229	2076229	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	148	272	0	ENST00000349721.2:c.1936G>A	p.Asp646Asn	p.D646N	ENST00000349721	NM_003070.3	646	Gat/Aat																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2083404	2083404	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	145	369	0	ENST00000349721.2:c.2406T>G	p.Ile802Met	p.I802M	ENST00000349721	NM_003070.3	802	atT/atG																																																																															
MTAP	4507	MSKCC	GRCh37	9	21815492	21815492	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	131	235	0	ENST00000380172.4:c.94A>C	p.Lys32Gln	p.K32Q	ENST00000380172	NM_002451.3	32	Aaa/Caa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5022073	5022073	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	164	379	0	ENST00000381652.3:c.86C>A	p.Ala29Asp	p.A29D	ENST00000381652	NM_004972.3	29	gCc/gAc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5073710	5073710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	39	353	0	ENST00000381652.3:c.1789G>A	p.Ala597Thr	p.A597T	ENST00000381652	NM_004972.3	597	Gca/Aca																																																																															
CD274	29126	MSKCC	GRCh37	9	5467856	5467856	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	151	449	0	ENST00000381577.3:c.867G>T	p.Glu289Asp	p.E289D	ENST00000381577	NM_014143.3	289	gaG/gaT																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80343545	80343545	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	43	371	0	ENST00000286548.4:c.774T>G	p.Ile258Met	p.I258M	ENST00000286548	NM_002072.3	258	atT/atG																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465645	8465645	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	192	423	0	ENST00000356435.5:c.3535A>C	p.Ser1179Arg	p.S1179R	ENST00000356435		1179	Agc/Cgc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499744	8499744	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	265	451	0	ENST00000356435.5:c.2225G>T	p.Gly742Val	p.G742V	ENST00000356435		742	gGc/gTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500909	8500909	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			715	189	472	0	ENST00000356435.5:c.1973A>C	p.Lys658Thr	p.K658T	ENST00000356435		658	aAg/aCg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87482348	87482348	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	233	467	0	ENST00000277120.3:c.1633+2T>C		p.X545_splice	ENST00000277120		545																																																																																
SYK	6850	MSKCC	GRCh37	9	93636520	93636520	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	229	479	0	ENST00000375746.1:c.950C>A	p.Thr317Asn	p.T317N	ENST00000375746	NM_001174167.1	317	aCt/aAt																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123504071	123504071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	130	335	0	ENST00000371139.4:c.247C>A	p.Leu83Ile	p.L83I	ENST00000371139	NM_001114937.2	83	Ctc/Atc																																																																															
PHF6	84295	MSKCC	GRCh37	X	133559259	133559259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	171	389	0	ENST00000332070.3:c.997G>T	p.Asp333Tyr	p.D333Y	ENST00000332070	NM_032458.2	333	Gat/Tat																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918698	44918698	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	169	366	0	ENST00000377967.4:c.1181T>G	p.Ile394Ser	p.I394S	ENST00000377967	NM_021140.2	394	aTt/aGt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44966704	44966704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	162	352	0	ENST00000377967.4:c.3928C>T	p.Leu1310Phe	p.L1310F	ENST00000377967	NM_021140.2	1310	Ctc/Ttc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969433	44969433	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	165	369	0	ENST00000377967.4:c.4115T>G	p.Phe1372Cys	p.F1372C	ENST00000377967	NM_021140.2	1372	tTt/tGt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228193	53228193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			855	223	587	0	ENST00000375401.3:c.2209C>A	p.Leu737Ile	p.L737I	ENST00000375401	NM_004187.3	737	Ctc/Atc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410967	63410967	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			844	85	607	0	ENST00000330258.3:c.2200G>T	p.Glu734Ter	p.E734*	ENST00000330258	NM_152424.3	734	Gaa/Taa																																																																															
ATRX	546	MSKCC	GRCh37	X	76763911	76763911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			783	68	508	0	ENST00000373344.5:c.7397G>A	p.Gly2466Asp	p.G2466D	ENST00000373344	NM_000489.3	2466	gGt/gAt																																																																															
ATRX	546	MSKCC	GRCh37	X	76872170	76872170	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	175	312	0	ENST00000373344.5:c.5477T>C	p.Phe1826Ser	p.F1826S	ENST00000373344	NM_000489.3	1826	tTc/tCc																																																																															
ATRX	546	MSKCC	GRCh37	X	76875929	76875929	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	163	385	0	ENST00000373344.5:c.5206A>G	p.Asn1736Asp	p.N1736D	ENST00000373344	NM_000489.3	1736	Aat/Gat																																																																															
ATRX	546	MSKCC	GRCh37	X	76937811	76937811	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	191	482	0	ENST00000373344.5:c.2937A>C	p.Glu979Asp	p.E979D	ENST00000373344	NM_000489.3	979	gaA/gaC																																																																															
ATRX	546	MSKCC	GRCh37	X	76939781	76939781	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	169	469	0	ENST00000373344.5:c.967A>G	p.Asn323Asp	p.N323D	ENST00000373344	NM_000489.3	323	Aat/Gat																																																																															
ATRX	546	MSKCC	GRCh37	X	76939828	76939828	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	37	478	0	ENST00000373344.5:c.920A>C	p.Lys307Thr	p.K307T	ENST00000373344	NM_000489.3	307	aAa/aCa																																																																															
ATRX	546	MSKCC	GRCh37	X	76952148	76952148	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	136	305	0	ENST00000373344.5:c.287A>C	p.Lys96Thr	p.K96T	ENST00000373344	NM_000489.3	96	aAa/aCa																																																																															
ATRX	546	MSKCC	GRCh37	X	76972631	76972631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	169	319	0	ENST00000373344.5:c.110G>A	p.Arg37Gln	p.R37Q	ENST00000373344	NM_000489.3	37	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0077408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	276	364	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0077408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	291	582	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																															
RB1	5925	MSKCC	GRCh37	13	49027168	49027168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913305		P-0077408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	208	390	0	ENST00000267163.4:c.1735C>T	p.Arg579Ter	p.R579*	ENST00000267163	NM_000321.2	579	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952146	178952147	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0077408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	256	430	0	ENST00000263967.3:c.3203dup	p.Asn1068LysfsTer5	p.N1068Kfs*5	ENST00000263967	NM_006218.2	1067	-/A																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198274733	198274733	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-			P-0077408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	108	397	0	ENST00000335508.6:c.667-2del		p.X223_splice	ENST00000335508	NM_012433.2	223																																																																																
NF1	4763	MSKCC	GRCh37	17	29592290	29592290	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	202	354	0	ENST00000358273.4:c.4768T>G	p.Leu1590Val	p.L1590V	ENST00000358273	NM_001042492.2	1590	Tta/Gta																																																																															
AR	367	MSKCC	GRCh37	X	66766380	66766565	+	inframe_deletion	In_Frame_Del	DEL	CGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGCGGGAGCTGTAGCCCCCTACGGCTACACTCGGCCCCCTCAGGGGCTGGCGGGCCAGGAAAGCGACTTCACCGCACCTGATGTGTGGTACCCTGGCGGCATGGTGAGCAGAGTGCCCTATCCCAGTCCCACTTGTGTCAAAAGCGAAATGGGCCC	CGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGCGGGAGCTGTAGCCCCCTACGGCTACACTCGGCCCCCTCAGGGGCTGGCGGGCCAGGAAAGCGACTTCACCGCACCTGATGTGTGGTACCCTGGCGGCATGGTGAGCAGAGTGCCCTATCCCAGTCCCACTTGTGTCAAAAGCGAAATGGGCCC	-			P-0077408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	137	243	0	ENST00000374690.3:c.1393_1578del	p.Gly465_Pro526del	p.G465_P526del	ENST00000374690	NM_000044.3	464	ggCGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGCGGGAGCTGTAGCCCCCTACGGCTACACTCGGCCCCCTCAGGGGCTGGCGGGCCAGGAAAGCGACTTCACCGCACCTGATGTGTGGTACCCTGGCGGCATGGTGAGCAGAGTGCCCTATCCCAGTCCCACTTGTGTCAAAAGCGAAATGGGCCCc/ggc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0077409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	264	578	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0077409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	301	474	2	ENST00000257430.4:c.3919dup	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189849	66189849	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139793674		P-0077409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	160	330	0	ENST00000273854.3:c.3097G>A	p.Gly1033Arg	p.G1033R	ENST00000273854	NM_004439.5	1033	Gga/Aga																																																																															
BRCA1	672	MSKCC	GRCh37	17	41258473	41258474	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T	rs397508938		P-0077409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	183	282	0	ENST00000357654.3:c.211dup	p.Arg71LysfsTer10	p.R71Kfs*10	ENST00000357654	NM_007294.3	71	agg/aAgg																																																																															
CBL	867	MSKCC	GRCh37	11	119146812	119146812	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	336	441	0	ENST00000264033.4:c.975C>G	p.Phe325Leu	p.F325L	ENST00000264033	NM_005188.3	325	ttC/ttG																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107131	27107134	+	frameshift_variant	Frame_Shift_Del	DEL	CACT	CACT	-			P-0077409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	281	591	0	ENST00000324856.7:c.6744_6747del	p.His2248GlnfsTer18	p.H2248Qfs*18	ENST00000324856	NM_006015.4	2248	CACTca/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	230	254	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9776594	9776594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1406071172		P-0077409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	131	502	0	ENST00000377346.4:c.697G>A	p.Val233Met	p.V233M	ENST00000377346	NM_005026.3	233	Gtg/Atg																																																																															
AXL	558	MSKCC	GRCh37	19	41743961	41743961	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	96	632	1	ENST00000301178.4:c.896T>A	p.Leu299His	p.L299H	ENST00000301178	NM_021913.4	299	cTc/cAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275230	41275230	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	392	543	0	ENST00000349496.5:c.1396T>A	p.Cys466Ser	p.C466S	ENST00000349496	NM_001904.3	466	Tgt/Agt																																																																															
IGF2	3481	MSKCC	GRCh37	11	2156634	2156635	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0077409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	105	606	0	ENST00000434045.2:c.287_288delinsAA	p.Thr96Lys	p.T96K	ENST00000434045	NM_001127598.1	96	aCC/aAA																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145736862	145736862	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			738	88	499	0	ENST00000428558.2:c.3579T>A	p.His1193Gln	p.H1193Q	ENST00000428558	NM_004260.3	1193	caT/caA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879405	151879405	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			796	62	570	0	ENST00000262189.6:c.5540T>A	p.Phe1847Tyr	p.F1847Y	ENST00000262189	NM_170606.2	1847	tTt/tAt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220371	1220372	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0077416-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			281	51	448	0	ENST00000326873.7:c.465-1_465delinsTT		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
ASXL1	171023	MSKCC	GRCh37	20	30956891	30956891	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077416-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			263	43	326	0	ENST00000375687.4:c.217A>G	p.Lys73Glu	p.K73E	ENST00000375687	NM_015338.5	73	Aaa/Gaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0077416-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			220	52	215	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127911981	127911981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077416-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			316	47	364	0	ENST00000373547.4:c.889C>T	p.Pro297Ser	p.P297S	ENST00000373547	NM_002721.4	297	Ccc/Tcc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230542	46230542	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077416-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			317	75	329	0	ENST00000334344.6:c.791G>A	p.Trp264Ter	p.W264*	ENST00000334344	NM_152641.2	264	tGg/tAg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198257033	198257033	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077416-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			249	29	257	0	ENST00000335508.6:c.3909C>G	p.Ile1303Met	p.I1303M	ENST00000335508	NM_012433.2	1303	atC/atG																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602510	10602515	+	inframe_deletion	In_Frame_Del	DEL	CGCCAA	CGCCAA	-			P-0077416-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			293	36	514	0	ENST00000171111.5:c.1063_1068del	p.Leu355_Ala356del	p.L355_A356del	ENST00000171111	NM_203500.1	355	TTGGCG/-																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273980	10273980	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1480537862		P-0077416-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			330	37	450	0	ENST00000330684.3:c.289G>T	p.Gly97Cys	p.G97C	ENST00000330684	NM_001134407.1	97	Ggc/Tgc																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51520005	51520005	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077416-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			258	25	253	0	ENST00000260433.2:c.422G>A	p.Trp141Ter	p.W141*	ENST00000260433		141	tGg/tAg																																																																															
NF1	4763	MSKCC	GRCh37	17	29665752	29665755	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0077429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	32	328	0	ENST00000358273.4:c.6852_6855del	p.Tyr2285ThrfsTer5	p.Y2285Tfs*5	ENST00000358273	NM_001042492.2	2284	ACTTac/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0077429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	104	384	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0077429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	163	567	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923509	9923509	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0077429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	67	355	0	ENST00000330684.3:c.1778C>T	p.Ala593Val	p.A593V	ENST00000330684	NM_001134407.1	593	gCa/gTa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682365	37682365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	120	595	1	ENST00000447079.4:c.3556C>T	p.Pro1186Ser	p.P1186S	ENST00000447079	NM_015083.1	1186	Cca/Tca																																																																															
CALR	811	MSKCC	GRCh37	19	13050958	13050958	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	58	530	0	ENST00000316448.5:c.489C>G	p.Cys163Trp	p.C163W	ENST00000316448	NM_004343.3	163	tgC/tgG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0077430-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	77	370	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859610	57859610	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369404558		P-0077430-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	85	477	0	ENST00000228682.2:c.664G>A	p.Glu222Lys	p.E222K	ENST00000228682	NM_005269.2	222	Gag/Aag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038756	47038756	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077430-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	103	428	0	ENST00000329236.7:c.532C>T	p.Gln178Ter	p.Q178*	ENST00000329236	NM_001204466.1	178	Cag/Tag																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2097809	2097809	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077430-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	126	517	0	ENST00000219066.1:c.40G>C	p.Ala14Pro	p.A14P	ENST00000219066	NM_002528.5	14	Gcg/Ccg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057781	27057781	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	80	489	0	ENST00000324856.7:c.1489C>T	p.Gln497Ter	p.Q497*	ENST00000324856	NM_006015.4	497	Caa/Taa																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156735	20156735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	46	216	0	ENST00000379607.5:c.22G>A	p.Gly8Arg	p.G8R	ENST00000379607	NM_001412.3	8	Gga/Aga																																																																															
CTR9	9646	MSKCC	GRCh37	11	10789931	10789931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	46	359	0	ENST00000361367.2:c.2002G>A	p.Asp668Asn	p.D668N	ENST00000361367	NM_014633.3	668	Gat/Aat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105966	27105970	+	frameshift_variant	Frame_Shift_Del	DEL	CGAGA	CGAGA	-			P-0077431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	91	475	0	ENST00000324856.7:c.5577_5581del	p.Phe1859LeufsTer40	p.F1859Lfs*40	ENST00000324856	NM_006015.4	1859	ttCGAGAgc/ttgc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288321	33288321	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			107	310	479	0	ENST00000374542.5:c.1087G>T	p.Glu363Ter	p.E363*	ENST00000374542	NM_001141970.1	363	Gaa/Taa																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690333	33690333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	205	419	0	ENST00000308377.4:c.494C>T	p.Pro165Leu	p.P165L	ENST00000308377	NM_152270.3	165	cCt/cTt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754850	57754850	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			63	217	301	0	ENST00000274289.3:c.340C>A	p.Pro114Thr	p.P114T	ENST00000274289	NM_006622.3	114	Cct/Act																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164162	47164162	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			81	169	322	0	ENST00000409792.3:c.1964del	p.Leu655TyrfsTer4	p.L655Yfs*4	ENST00000409792	NM_014159.6	655	tTa/ta																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572183	64572183	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	241	470	0	ENST00000337652.1:c.1471G>T	p.Glu491Ter	p.E491*	ENST00000337652	NM_130803.2	491	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0077438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	201	697	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518049	176518049	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs566495475		P-0077438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	118	681	0	ENST00000292408.4:c.547C>T	p.Arg183Cys	p.R183C	ENST00000292408	NM_213647.1	183	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210506	5210506	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	96	659	0	ENST00000357368.4:c.5461C>T	p.Arg1821Ter	p.R1821*	ENST00000357368	NM_002850.3	1821	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112163652	112163652	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	51	393	0	ENST00000257430.4:c.1575C>A	p.Cys525Ter	p.C525*	ENST00000257430	NM_000038.5	525	tgC/tgA																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528579	89528579	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	52	407	0	ENST00000336596.2:c.2879G>T	p.Gly960Val	p.G960V	ENST00000336596	NM_005233.5	960	gGg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175408	112175436	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGAACACTATGTTCAGGAGACCCCACT	CCTGAACACTATGTTCAGGAGACCCCACT	-			P-0077438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	129	541	0	ENST00000257430.4:c.4118_4146del	p.Pro1373HisfsTer3	p.P1373Hfs*3	ENST00000257430	NM_000038.5	1373	CCTGAACACTATGTTCAGGAGACCCCACTc/c																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781307	9781307	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0077438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	50	549	0	ENST00000377346.4:c.1811+1G>C		p.X604_splice	ENST00000377346	NM_005026.3	604																																																																																
WT1	7490	MSKCC	GRCh37	11	32421585	32421585	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	102	550	0	ENST00000332351.3:c.1007G>T	p.Ser336Ile	p.S336I	ENST00000332351	NM_024426.4	336	aGc/aTc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138400842	138400842	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	146	454	0	ENST00000289153.2:c.2471A>G	p.Asp824Gly	p.D824G	ENST00000289153	NM_006219.2	824	gAt/gGt																																																																															
MED12	9968	MSKCC	GRCh37	X	70356173	70356174	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0077438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	22	234	0	ENST00000374080.3:c.5072_5073dup	p.Glu1692LeufsTer4	p.E1692Lfs*4	ENST00000374080		1690	ctt/cTTtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077440-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	80	671	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077440-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	71	331	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0077448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	64	343	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
ATM	472	MSKCC	GRCh37	11	108224583	108224583	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730881329		P-0077448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	83	442	0	ENST00000278616.4:c.8762C>A	p.Thr2921Lys	p.T2921K	ENST00000278616	NM_000051.3	2921	aCg/aAg																																																																															
MED12	9968	MSKCC	GRCh37	X	70356806	70356806	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	111	540	0	ENST00000374080.3:c.5478del	p.Gly1827ValfsTer3	p.G1827Vfs*3	ENST00000374080		1826	ccT/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	128	522	1	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354357	354357	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1456907312		P-0077466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	76	371	0	ENST00000262320.3:c.1201C>T	p.Arg401Cys	p.R401C	ENST00000262320	NM_003502.3	401	Cgc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28929495		P-0077466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	288	396	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																															
HGF	3082	MSKCC	GRCh37	7	81335690	81335691	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0077466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	80	337	0	ENST00000222390.5:c.1669_1670delinsTT	p.Gly557Leu	p.G557L	ENST00000222390	NM_000601.4	557	GGa/TTa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467412	25467412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	125	481	0	ENST00000264709.3:c.1664G>A	p.Cys555Tyr	p.C555Y	ENST00000264709	NM_175629.2	555	tGc/tAc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21347162	21347162	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	96	477	0	ENST00000215739.8:c.1229A>T	p.Asn410Ile	p.N410I	ENST00000215739	NM_006767.3	410	aAc/aTc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42842580	42842580	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	109	442	0	ENST00000398585.3:c.1277A>T	p.Glu426Val	p.E426V	ENST00000398585	NM_001135099.1	426	gAg/gTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866710	37866711	+	missense_variant	Missense_Mutation	DNP	GC	GC	TA			P-0077466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	162	523	0	ENST00000269571.5:c.877_878delinsTA	p.Ala293Tyr	p.A293Y	ENST00000269571		293	GCc/TAc																																																																															
ATM	472	MSKCC	GRCh37	11	108099935	108099936	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs762089971		P-0077468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	38	355	0	ENST00000278616.4:c.217_218del	p.Glu73MetfsTer26	p.E73Mfs*26	ENST00000278616	NM_000051.3	72	acAGaa/acaa																																																																															
MET	4233	MSKCC	GRCh37	7	116412042	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	AG	AG	TT			P-0077468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	87	626	0	ENST00000397752.3:c.3027_3028delinsTT	p.Glu1009_Asp1010delinsAspTyr	p.E1009_D1010delinsDY	ENST00000397752	NM_000245.2	1009	gaAGat/gaTTat																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38788538	38788538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	38	397	0	ENST00000348513.6:c.623G>T	p.Ser208Ile	p.S208I	ENST00000348513	NM_003079.4	208	aGt/aTt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732964	30732965	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGC			P-0077468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	52	626	0	ENST00000359013.4:c.1653_1655dup	p.Ala552dup	p.A552dup	ENST00000359013	NM_001024847.2	552	gag/gaGGCg																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551520	150551520	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	75	626	0	ENST00000369026.2:c.487A>C	p.Thr163Pro	p.T163P	ENST00000369026	NM_021960.4	163	Acg/Ccg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0077476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	13	384	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0077476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	144	491	0	ENST00000275493.2:c.2303_2311dup	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
ATM	472	MSKCC	GRCh37	11	108196143	108196143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs564652222		P-0077476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	46	310	0	ENST00000278616.4:c.6679C>T	p.Arg2227Cys	p.R2227C	ENST00000278616	NM_000051.3	2227	Cgc/Tgc																																																																															
REST	5978	MSKCC	GRCh37	4	57797636	57797637	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0077476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	71	522	0	ENST00000309042.7:c.2615dup	p.Leu872PhefsTer16	p.L872Ffs*16	ENST00000309042	NM_005612.4	871	aat/aaTt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061214	38061214	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	459	500	0	ENST00000250448.2:c.775T>A	p.Tyr259Asn	p.Y259N	ENST00000250448	NM_004496.3	259	Tac/Aac																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519912		P-0077477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	185	265	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																															
SETD8	387893	MSKCC	GRCh37	12	123879627	123879627	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781583292		P-0077477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	158	279	0	ENST00000330479.4:c.323C>T	p.Ala108Val	p.A108V	ENST00000330479	NM_020382.3	108	gCc/gTc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371711	55371711	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	247	513	0	ENST00000297316.4:c.401A>G	p.Asn134Ser	p.N134S	ENST00000297316	NM_022454.3	134	aAc/aGc																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0077486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	131	300	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764146326		P-0077486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	149	299	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67590403	67590403	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	29	232	0	ENST00000274335.5:c.1465G>T	p.Glu489Ter	p.E489*	ENST00000274335		489	Gaa/Taa																																																																															
MGA	23269	MSKCC	GRCh37	15	42054012	42054012	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1411818407		P-0077486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	23	205	0	ENST00000219905.7:c.7474C>T	p.Arg2492Trp	p.R2492W	ENST00000219905	NM_001164273.1	2492	Cgg/Tgg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399458	139399458	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752839680		P-0077486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	41	363	0	ENST00000277541.6:c.4685C>T	p.Ala1562Val	p.A1562V	ENST00000277541	NM_017617.3	1562	gCg/gTg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9778944	9778944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	62	307	0	ENST00000377346.4:c.1213C>T	p.Arg405Cys	p.R405C	ENST00000377346	NM_005026.3	405	Cgc/Tgc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597402	10597402	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770453522		P-0077487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			69	107	450	0	ENST00000171111.5:c.1801C>T	p.Arg601Trp	p.R601W	ENST00000171111	NM_203500.1	601	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970971	21970971	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			63	109	589	0	ENST00000304494.5:c.387C>A	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taC/taA																																																																															
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0077487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			71	79	522	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																																																															
ATM	472	MSKCC	GRCh37	11	108199804	108199804	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	38	318	0	ENST00000278616.4:c.7150del	p.Met2384Ter	p.M2384*	ENST00000278616	NM_000051.3	2382	ggA/gg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348135	89348135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	81	533	0	ENST00000301030.4:c.4815G>T	p.Met1605Ile	p.M1605I	ENST00000301030	NM_001256183.1	1605	atG/atT																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864711	57864711	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	88	523	0	ENST00000228682.2:c.2188C>A	p.Leu730Met	p.L730M	ENST00000228682	NM_005269.2	730	Ctg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0077487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			107	77	275	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946739	71946739	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	95	558	0	ENST00000298229.2:c.2680G>T	p.Asp894Tyr	p.D894Y	ENST00000298229	NM_001567.3	894	Gat/Tat																																																																															
TET2	54790	MSKCC	GRCh37	4	106164854	106164854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	33	344	0	ENST00000380013.4:c.3722C>T	p.Ala1241Val	p.A1241V	ENST00000380013	NM_001127208.2	1241	gCt/gTt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961250	15961262	+	frameshift_variant	Frame_Shift_Del	DEL	GATGGGTCCTGGG	GATGGGTCCTGGG	-			P-0077487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	25	454	0	ENST00000268712.3:c.6127_6139del	p.Pro2043GlyfsTer2	p.P2043Gfs*2	ENST00000268712	NM_006311.3	2043	CCCAGGACCCATCgg/gg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244407	5244407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			61	83	478	0	ENST00000357368.4:c.1075C>T	p.Pro359Ser	p.P359S	ENST00000357368	NM_002850.3	359	Cct/Tct																																																																															
NF1	4763	MSKCC	GRCh37	17	29670138	29670138	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1357330262		P-0077487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	64	313	0	ENST00000358273.4:c.7174G>A	p.Gly2392Arg	p.G2392R	ENST00000358273	NM_001042492.2	2392	Gga/Aga																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445587	29445587	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1299913719		P-0077487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	58	507	0	ENST00000544604.2:c.1418A>G	p.Tyr473Cys	p.Y473C	ENST00000544604	NM_001206998.1	473	tAc/tGc																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128201210	128201210	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	89	452	0	ENST00000265960.3:c.1525A>G	p.Thr509Ala	p.T509A	ENST00000265960	NM_001006617.1	509	Acg/Gcg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123674	11123674	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			48	87	390	0	ENST00000344626.4:c.2324G>T	p.Gly775Val	p.G775V	ENST00000344626	NM_003072.3	775	gGc/gTc																																																																															
ALB	213	MSKCC	GRCh37	4	74283295	74283295	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	39	352	0	ENST00000295897.4:c.1337C>G	p.Thr446Ser	p.T446S	ENST00000295897	NM_000477.5	446	aCt/aGt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793468	18793468	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	115	297	0	ENST00000266497.5:c.4165G>T	p.Asp1389Tyr	p.D1389Y	ENST00000266497		1389	Gac/Tac																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38194921	38194921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	91	323	0	ENST00000317025.8:c.812G>T	p.Gly271Val	p.G271V	ENST00000317025	NM_023034.1	271	gGc/gTc																																																																															
ALK	238	MSKCC	GRCh37	2	29917765	29917765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	81	395	0	ENST00000389048.3:c.903G>T	p.Met301Ile	p.M301I	ENST00000389048	NM_004304.4	301	atG/atT																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101909975	101909975	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	45	321	0	ENST00000374994.4:c.1295T>A	p.Val432Glu	p.V432E	ENST00000374994	NM_004612.2	432	gTa/gAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29684001	29684001	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	87	372	0	ENST00000358273.4:c.7762C>T	p.Gln2588Ter	p.Q2588*	ENST00000358273	NM_001042492.2	2588	Caa/Taa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115722	8115723	+	stop_gained	Nonsense_Mutation	DNP	GA	GA	AT			P-0077488-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	202	417	2	ENST00000346208.3:c.1068_1069delinsAT	p.Met356_Lys357delinsIleTer	p.M356_K357delinsI*	ENST00000346208		356	atGAag/atATag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43762057	43762057	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0077488-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	22	346	0	ENST00000382044.4:c.1388A>C	p.His463Pro	p.H463P	ENST00000382044	NM_001141980.1	463	cAt/cCt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177517	56177518	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0077488-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	209	389	0	ENST00000399503.3:c.2494dup	p.His832ProfsTer31	p.H832Pfs*31	ENST00000399503	NM_005921.1	830	-/C																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099940	27099940	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077488-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	261	553	0	ENST00000324856.7:c.3821del	p.Gly1274AspfsTer15	p.G1274Dfs*15	ENST00000324856	NM_006015.4	1273	atG/at																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184087	56184087	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077488-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	199	367	0	ENST00000399503.3:c.4292A>T	p.Asp1431Val	p.D1431V	ENST00000399503	NM_005921.1	1431	gAt/gTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8524966	8524966	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764474694		P-0077491-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	47	274	0	ENST00000356435.5:c.638C>T	p.Ala213Val	p.A213V	ENST00000356435		213	gCg/gTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202136344	202136344	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0077491-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	45	332	0	ENST00000358485.4:c.588G>A	p.Met196Ile	p.M196I	ENST00000358485	NM_001080125.1	196	atG/atA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0077491-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			94	183	247	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422033	47422033	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077491-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	91	445	0	ENST00000404338.3:c.101G>T	p.Gly34Val	p.G34V	ENST00000404338	NM_004491.4	34	gGa/gTa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553379	106553379	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077491-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	36	455	0	ENST00000369096.4:c.1344C>A	p.Ser448Arg	p.S448R	ENST00000369096	NM_001198.3	448	agC/agA																																																																															
MSH3	4437	MSKCC	GRCh37	5	80160747	80160747	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1380044382		P-0077491-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	59	331	0	ENST00000265081.6:c.3116G>A	p.Ser1039Asn	p.S1039N	ENST00000265081	NM_002439.4	1039	aGc/aAc																																																																															
ATM	472	MSKCC	GRCh37	11	108205825	108205825	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1060501695		P-0077491-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	184	306	0	ENST00000278616.4:c.8140C>T	p.Gln2714Ter	p.Q2714*	ENST00000278616	NM_000051.3	2714	Cag/Tag																																																																															
KIT	3815	MSKCC	GRCh37	4	55561764	55561764	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			714	148	467	0	ENST00000288135.5:c.154G>T	p.Asp52Tyr	p.D52Y	ENST00000288135	NM_000222.2	52	Gac/Tac																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0077499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	632	468	0	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37879672	37879672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	51	734	0	ENST00000269571.5:c.2047C>T	p.Arg683Trp	p.R683W	ENST00000269571		683	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578224	7578224	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	614	647	0	ENST00000269305.4:c.625del	p.Arg209GlufsTer38	p.R209Efs*38	ENST00000269305	NM_001126112.2	209	Aga/ga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32968936	32968936	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	152	431	0	ENST00000380152.3:c.9367A>C	p.Ser3123Arg	p.S3123R	ENST00000380152		3123	Agc/Cgc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65344769	65344769	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	113	516	0	ENST00000342505.4:c.268G>T	p.Ala90Ser	p.A90S	ENST00000342505	NM_002227.2	90	Gct/Tct																																																																															
TSC2	7249	MSKCC	GRCh37	16	2106739	2106739	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs762104739		P-0077499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	245	432	0	ENST00000219476.3:c.743A>G	p.Asn248Ser	p.N248S	ENST00000219476	NM_000548.3	248	aAc/aGc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678440	88678440	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	348	546	0	ENST00000360948.2:c.1096A>T	p.Asn366Tyr	p.N366Y	ENST00000360948	NM_001012338.2	366	Aac/Tac																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258895	16258895	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201103146		P-0077499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	60	683	0	ENST00000375759.3:c.6160C>A	p.Pro2054Thr	p.P2054T	ENST00000375759	NM_015001.2	2054	Ccc/Acc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518085	8518085	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs202222673		P-0077500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	203	397	0	ENST00000356435.5:c.1306G>T	p.Val436Leu	p.V436L	ENST00000356435		436	Gta/Tta																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0077500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	146	387	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974748	21974748	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	177	510	0	ENST00000304494.5:c.79G>T	p.Glu27Ter	p.E27*	ENST00000304494	NM_000077.4	27	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519976		P-0077500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	318	520	0	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911589	32911589	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs780279081		P-0077500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	53	286	0	ENST00000380152.3:c.3097G>C	p.Asp1033His	p.D1033H	ENST00000380152		1033	Gat/Cat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438623	49438623	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754087735		P-0077500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	168	454	0	ENST00000301067.7:c.4867G>A	p.Glu1623Lys	p.E1623K	ENST00000301067	NM_003482.3	1623	Gag/Aag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024873	31024873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	146	525	0	ENST00000375687.4:c.4358G>A	p.Ser1453Asn	p.S1453N	ENST00000375687	NM_015338.5	1453	aGc/aAc																																																																															
REL	5966	MSKCC	GRCh37	2	61147175	61147175	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0077500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1031	77	303	0	ENST00000295025.8:c.854-1G>A		p.X285_splice	ENST00000295025	NM_002908.2	285																																																																																
JAK3	3718	MSKCC	GRCh37	19	17943723	17943723	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0077500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			858	158	580	0	ENST00000458235.1:c.2366C>G	p.Ser789Ter	p.S789*	ENST00000458235	NM_000215.3	789	tCa/tGa																																																																															
NF1	4763	MSKCC	GRCh37	17	29552144	29552144	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	115	370	2	ENST00000358273.4:c.1882del	p.Tyr628ThrfsTer3	p.Y628Tfs*3	ENST00000358273	NM_001042492.2	626	cTt/ct																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786842	135786842	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0077500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	79	410	0	ENST00000298552.3:c.1027C>T	p.Gln343Ter	p.Q343*	ENST00000298552	NM_001162426.1	343	Caa/Taa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			905	160	617	0	ENST00000244661.2:c.220G>A	p.Glu74Lys	p.E74K	ENST00000244661	NM_003537.3	74	Gaa/Aaa																																																																															
BARD1	580	MSKCC	GRCh37	2	215610542	215610542	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	57	346	0	ENST00000260947.4:c.1714C>A	p.Leu572Ile	p.L572I	ENST00000260947	NM_000465.2	572	Ctt/Att																																																																															
APC	324	MSKCC	GRCh37	5	112173771	112173771	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	106	430	0	ENST00000257430.4:c.2480A>G	p.Asn827Ser	p.N827S	ENST00000257430	NM_000038.5	827	aAt/aGt																																																																															
KIT	3815	MSKCC	GRCh37	4	55593680	55593680	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	120	368	0	ENST00000288135.5:c.1746G>C	p.Trp582Cys	p.W582C	ENST00000288135	NM_000222.2	582	tgG/tgC																																																																															
PPARG	5468	MSKCC	GRCh37	3	12447551	12447551	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1339677544		P-0077500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	119	465	0	ENST00000287820.6:c.790A>G	p.Ile264Val	p.I264V	ENST00000287820	NM_015869.4	264	Atc/Gtc																																																																															
ERG	2078	MSKCC	GRCh37	21	39775431	39775431	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1425323523		P-0077500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	132	531	0	ENST00000288319.7:c.589G>C	p.Glu197Gln	p.E197Q	ENST00000288319	NM_182918.3	197	Gag/Cag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245468	153245468	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	145	398	0	ENST00000281708.4:c.1723C>G	p.His575Asp	p.H575D	ENST00000281708	NM_033632.3	575	Cac/Gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882019		P-0077504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	177	738	0	ENST00000269305.4:c.455dup	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
ABL1	25	MSKCC	GRCh37	9	133760715	133760715	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1285701996		P-0077504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	128	754	0	ENST00000318560.5:c.3038G>A	p.Arg1013Gln	p.R1013Q	ENST00000318560	NM_005157.4	1013	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175770	112175771	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0077504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	125	663	0	ENST00000257430.4:c.4479_4480del	p.Glu1494LysfsTer19	p.E1494Kfs*19	ENST00000257430	NM_000038.5	1493	acGGaa/acaa																																																																															
APC	324	MSKCC	GRCh37	5	112173627	112173627	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0077504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	107	592	0	ENST00000257430.4:c.2336T>G	p.Leu779Ter	p.L779*	ENST00000257430	NM_000038.5	779	tTa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs985033810		P-0077506-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	72	516	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76937553	76937553	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077506-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	99	554	0	ENST00000373344.5:c.3195G>T	p.Glu1065Asp	p.E1065D	ENST00000373344	NM_000489.3	1065	gaG/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	159	505	0	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653843	89653844	+	missense_variant	Missense_Mutation	DNP	GA	GA	TG			P-0077518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	159	292	0	ENST00000371953.3:c.141_142delinsTG	p.Arg47_Asn48delinsSerAsp	p.R47_N48delinsSD	ENST00000371953	NM_000314.4	47	agGAac/agTGac																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741729	17741729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	33	482	0	ENST00000250003.3:c.400C>T	p.Arg134Cys	p.R134C	ENST00000250003	NM_002478.4	134	Cgc/Tgc																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871678	35871678	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	162	602	0	ENST00000216797.5:c.828C>G	p.Asn276Lys	p.N276K	ENST00000216797	NM_020529.2	276	aaC/aaG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0077521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	235	422	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SMO	6608	MSKCC	GRCh37	7	128850341	128850341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121918347		P-0077521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	155	475	0	ENST00000249373.3:c.1604G>T	p.Trp535Leu	p.W535L	ENST00000249373	NM_005631.4	535	tGg/tTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155721	56155722	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0077521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	281	421	0	ENST00000399503.3:c.816_817del	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	271	agAAaa/agaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578226	7578226	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	248	669	0	ENST00000269305.4:c.623A>G	p.Asp208Gly	p.D208G	ENST00000269305	NM_001126112.2	208	gAc/gGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151896469	151896469	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	75	343	0	ENST00000262189.6:c.4168G>T	p.Gly1390Ter	p.G1390*	ENST00000262189	NM_170606.2	1390	Gga/Tga																																																																															
FLCN	201163	MSKCC	GRCh37	17	17120402	17120402	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077735-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			147	26	271	0	ENST00000285071.4:c.1157C>A	p.Ser386Ter	p.S386*	ENST00000285071	NM_144997.5	386	tCa/tAa																																																																															
MET	4233	MSKCC	GRCh37	7	116411865	116411880	+	intron_variant	Intron	DEL	CCGTCTTTAACAAGCT	CCGTCTTTAACAAGCT	-			P-0077735-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			181	55	458	0	ENST00000397752.3:c.2888-37_2888-22del		p.*963*	ENST00000397752	NM_000245.2																																																																																	
ARAF	369	MSKCC	GRCh37	X	47426121	47426121	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519786		P-0078716-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			70	175	264	0	ENST00000377045.4:c.641C>T	p.Ser214Phe	p.S214F	ENST00000377045	NM_001654.4	214	tCc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0078716-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			148	207	257	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
MITF	4286	MSKCC	GRCh37	3	70005682	70005682	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0078716-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			215	12	318	0	ENST00000352241.4:c.1013+1G>A		p.X338_splice	ENST00000352241	NM_198159.2	338																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134959989	134959989	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0078716-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			186	117	342	0	ENST00000398015.3:c.2347-1G>T		p.X783_splice	ENST00000398015	NM_004441.4	783																																																																																
DICER1	23405	MSKCC	GRCh37	14	95590957	95590957	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078716-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			258	134	336	1	ENST00000343455.3:c.952G>T	p.Ala318Ser	p.A318S	ENST00000343455	NM_177438.2	318	Gca/Tca																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691936	30691938	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0078716-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			274	128	402	0	ENST00000359013.4:c.517_519del	p.Ile173del	p.I173del	ENST00000359013	NM_001024847.2	171	aaCATc/aac																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195272	102195272	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0078716-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			257	162	360	0	ENST00000263464.3:c.32C>G	p.Ser11Ter	p.S11*	ENST00000263464	NM_001165.4	11	tCa/tGa																																																																															
POT1	25913	MSKCC	GRCh37	7	124475468	124475468	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0078716-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			267	93	256	0	ENST00000357628.3:c.1370G>T	p.Gly457Val	p.G457V	ENST00000357628	NM_015450.2	457	gGa/gTa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410062	63410062	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078743-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	14	364	0	ENST00000330258.3:c.3105C>A	p.Asn1035Lys	p.N1035K	ENST00000330258	NM_152424.3	1035	aaC/aaA																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111512	8111513	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0078771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	220	217	0	ENST00000346208.3:c.999dup	p.Gly334TrpfsTer18	p.G334Wfs*18	ENST00000346208		333	aat/aaTt																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38792674	38792676	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0078771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	193	214	0	ENST00000348513.6:c.340_342del	p.Glu114del	p.E114del	ENST00000348513	NM_003079.4	114	GAA/-																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540622	187540622	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	103	213	0	ENST00000441802.2:c.7118A>T	p.Asp2373Val	p.D2373V	ENST00000441802	NM_005245.3	2373	gAt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0078772-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	215	266	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021699	69021699	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779206847		P-0078772-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			852	172	304	0	ENST00000288368.4:c.2987C>T	p.Ala996Val	p.A996V	ENST00000288368	NM_024870.2	996	gCg/gTg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150923513	150923518	+	inframe_deletion	In_Frame_Del	DEL	CACAGG	CACAGG	-			P-0078772-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	235	383	0	ENST00000271640.5:c.2161_2166del	p.Thr721_Gly722del	p.T721_G722del	ENST00000271640	NM_001145415.1	720	aaCACAGGc/aac																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503698	47503698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078772-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	233	388	0	ENST00000404338.3:c.4253C>T	p.Thr1418Met	p.T1418M	ENST00000404338	NM_004491.4	1418	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112103080	112103080	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078772-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	240	253	0	ENST00000257430.4:c.417del	p.Glu140ArgfsTer30	p.E140Rfs*30	ENST00000257430	NM_000038.5	139	Aaa/aa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001112	150001112	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078772-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	71	265	0	ENST00000253339.5:c.2492C>G	p.Pro831Arg	p.P831R	ENST00000253339		831	cCt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0078774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			66	48	192	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0078776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	196	426	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	170	334	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0078776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	181	406	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88428934	88428934	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	67	229	0	ENST00000360948.2:c.2166A>G	p.Ile722Met	p.I722M	ENST00000360948	NM_001012338.2	722	atA/atG																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326484	62326484	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A			P-0078776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	202	397	0	ENST00000482936.1:c.3409G>A	p.Gly1137Ser	p.G1137S	ENST00000482936		1137	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0078781-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	150	345	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969932	81969932	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1024473204		P-0078781-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	166	333	0	ENST00000359376.3:c.3001C>T	p.Arg1001Cys	p.R1001C	ENST00000359376	NM_002661.3	1001	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916957	178916957	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078781-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	29	204	0	ENST00000263967.3:c.344G>C	p.Arg115Pro	p.R115P	ENST00000263967	NM_006218.2	115	cGa/cCa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166817	32166817	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751686959		P-0078781-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	41	387	1	ENST00000375023.3:c.4421G>A	p.Arg1474Gln	p.R1474Q	ENST00000375023	NM_004557.3	1474	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112176027	112176030	+	frameshift_variant	Frame_Shift_Del	DEL	TTAT	TTAT	-			P-0078781-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	269	365	0	ENST00000257430.4:c.4738_4741del	p.Ile1580LeufsTer69	p.I1580Lfs*69	ENST00000257430	NM_000038.5	1579	aTTATt/at																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900942	114900942	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0078781-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	125	278	0	ENST00000543371.1:c.553-1G>A		p.X185_splice	ENST00000543371	NM_001198531.1	185																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36228016	36228016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078781-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	125	393	0	ENST00000222270.7:c.7402C>T	p.His2468Tyr	p.H2468Y	ENST00000222270	NM_014727.1	2468	Cac/Tac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41420086	41420086	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078781-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			792	75	355	0	ENST00000373198.4:c.235A>T	p.Ser79Cys	p.S79C	ENST00000373198	NM_133170.3	79	Agc/Tgc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913381		P-0078783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	150	357	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439570	51439570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	65	262	0	ENST00000262662.1:c.135G>A	p.Met45Ile	p.M45I	ENST00000262662		45	atG/atA																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488689	212488689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	37	336	0	ENST00000342788.4:c.2160G>T	p.Arg720Ser	p.R720S	ENST00000342788	NM_005235.2	720	agG/agT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033209	69033209	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	82	277	0	ENST00000288368.4:c.3649C>A	p.His1217Asn	p.H1217N	ENST00000288368	NM_024870.2	1217	Cat/Aat																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458107	120458107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			739	86	380	0	ENST00000256646.2:c.7238C>T	p.Pro2413Leu	p.P2413L	ENST00000256646	NM_024408.3	2413	cCc/cTc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35860953	35860953	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0078783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	111	295	0	ENST00000303115.3:c.83-1G>T		p.X28_splice	ENST00000303115	NM_002185.3	28																																																																																
TAP1	6890	MSKCC	GRCh37	6	32818864	32818864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	78	261	0	ENST00000354258.4:c.1087C>G	p.Leu363Val	p.L363V	ENST00000354258	NM_000593.5	363	Ctg/Gtg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223786	53223786	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	60	174	0	ENST00000375401.3:c.3573del	p.Gln1192ArgfsTer72	p.Q1192Rfs*72	ENST00000375401	NM_004187.3	1191	ggG/gg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427080	49427080	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	77	342	0	ENST00000301067.7:c.11408G>C	p.Gly3803Ala	p.G3803A	ENST00000301067	NM_003482.3	3803	gGc/gCc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672993	30672993	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			965	134	478	0	ENST00000376406.3:c.3967del	p.Glu1323LysfsTer38	p.E1323Kfs*38	ENST00000376406	NM_014641.2	1323	Gaa/aa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18439842	18439842	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	30	263	0	ENST00000266497.5:c.740C>G	p.Ser247Cys	p.S247C	ENST00000266497		247	tCt/tGt																																																																															
SDHA	6389	MSKCC	GRCh37	5	228421	228421	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	67	229	0	ENST00000264932.6:c.743G>C	p.Arg248Thr	p.R248T	ENST00000264932	NM_004168.2	248	aGa/aCa																																																																															
MGA	23269	MSKCC	GRCh37	15	42003046	42003046	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	40	300	0	ENST00000219905.7:c.2583T>A	p.Ser861Arg	p.S861R	ENST00000219905	NM_001164273.1	861	agT/agA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578399	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	98	366	0	ENST00000269305.4:c.531_532insT	p.His178SerfsTer3	p.H178Sfs*3	ENST00000269305	NM_001126112.2	177	-/T																																																																															
ABL1	25	MSKCC	GRCh37	9	133761012	133761012	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0078783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	112	299	0	ENST00000318560.5:c.3335A>C	p.Gln1112Pro	p.Q1112P	ENST00000318560	NM_005157.4	1112	cAg/cCg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876414	35876414	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	144	336	0	ENST00000303115.3:c.1206G>T	p.Gln402His	p.Q402H	ENST00000303115	NM_002185.3	402	caG/caT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602516	10602516	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	117	353	0	ENST00000171111.5:c.1062del	p.Leu355TrpfsTer45	p.L355Wfs*45	ENST00000171111	NM_203500.1	354	cgG/cg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939378	36939378	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	140	392	0	ENST00000361632.4:c.472C>G	p.Leu158Val	p.L158V	ENST00000361632		158	Ctg/Gtg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082787	16082787	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	19	208	0	ENST00000281043.3:c.601G>C	p.Glu201Gln	p.E201Q	ENST00000281043	NM_005378.4	201	Gag/Cag																																																																															
POT1	25913	MSKCC	GRCh37	7	124491925	124491925	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0078783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	49	176	0	ENST00000357628.3:c.949+1G>C		p.X317_splice	ENST00000357628	NM_015450.2	317																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67589596	67589619	+	inframe_deletion	In_Frame_Del	DEL	CACTCAGTTTCAAGAAAAAAGTCG	CACTCAGTTTCAAGAAAAAAGTCG	-			P-0078783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	21	225	0	ENST00000274335.5:c.1359_1382del	p.Asn453_Arg461delinsLys	p.N453_R461delinsK	ENST00000274335		453	aaCACTCAGTTTCAAGAAAAAAGTCGa/aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0078802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	148	313	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0078802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	253	485	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641433	18641433	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0078802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	26	304	0	ENST00000266497.5:c.2432A>C	p.Lys811Thr	p.K811T	ENST00000266497		811	aAg/aCg																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945222	54945222	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs745433550		P-0078802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	35	327	0	ENST00000312783.6:c.1204C>T	p.Gln402Ter	p.Q402*	ENST00000312783	NM_198436.1	402	Cag/Tag																																																																															
ALK	238	MSKCC	GRCh37	2	29451817	29451817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	27	199	0	ENST00000389048.3:c.2748G>T	p.Glu916Asp	p.E916D	ENST00000389048	NM_004304.4	916	gaG/gaT																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607618	46607618	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	92	394	0	ENST00000263734.3:c.1807C>G	p.Pro603Ala	p.P603A	ENST00000263734	NM_001430.4	603	Ccc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0078806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	174	357	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593520	48593520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	103	345	0	ENST00000342988.3:c.1271A>T	p.Asp424Val	p.D424V	ENST00000342988	NM_005359.5	424	gAt/gTt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45371774	45371774	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	71	349	0	ENST00000262160.6:c.1217A>G	p.Tyr406Cys	p.Y406C	ENST00000262160	NM_005901.5	406	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0078806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	177	253	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206664983	206664983	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0078806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	272	326	0	ENST00000367120.3:c.1736T>G	p.Val579Gly	p.V579G	ENST00000367120	NM_014002.3	579	gTg/gGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs483352695		P-0078809-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	156	327	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																															
RB1	5925	MSKCC	GRCh37	13	49030478	49030479	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078809-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	86	335	0	ENST00000267163.4:c.1959dup	p.Val654SerfsTer14	p.V654Sfs*14	ENST00000267163	NM_000321.2	651	-/A																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0078809-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	70	259	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MED12	9968	MSKCC	GRCh37	X	70349241	70349241	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012605-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			105	124	178	0	ENST00000374080.3:c.3653G>C	p.Gly1218Ala	p.G1218A	ENST00000374080		1218	gGa/gCa																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63973888	63973888	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61736570		P-0012605-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			466	70	459	0	ENST00000295900.6:c.1249G>A	p.Ala417Thr	p.A417T	ENST00000295900	NM_000333.3	417	Gcc/Acc																																																																															
PARP1	142	MSKCC	GRCh37	1	226567647	226567647	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	55	443	0	ENST00000366794.5:c.1519del	p.Ser507AlafsTer17	p.S507Afs*17	ENST00000366794	NM_001618.3	507	Agc/gc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073804	8073804	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	172	358	0	ENST00000377482.5:c.855del	p.Arg286GlufsTer9	p.R286Efs*9	ENST00000377482	NM_018948.3	285	ccC/cc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852248	63852248	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	78	328	0	ENST00000279873.7:c.3026C>G	p.Ala1009Gly	p.A1009G	ENST00000279873	NM_032199.2	1009	gCg/gGg																																																																															
HRAS	3265	MSKCC	GRCh37	11	533881	533881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs727503093		P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	51	409	1	ENST00000311189.7:c.175G>A	p.Ala59Thr	p.A59T	ENST00000311189		59	Gcc/Acc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	105	397	1	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	34	205	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416769	416769	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773466573		P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	168	363	1	ENST00000399788.2:c.3781C>T	p.Arg1261Trp	p.R1261W	ENST00000399788	NM_001042603.1	1261	Cgg/Tgg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495714	56495715	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	94	347	0	ENST00000267101.3:c.3910dup	p.His1304ProfsTer12	p.H1304Pfs*12	ENST00000267101	NM_001982.3	1302	gcc/gCcc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26975408	26975408	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	104	249	0	ENST00000381527.3:c.1038del	p.Phe346LeufsTer14	p.F346Lfs*14	ENST00000381527	NM_001260.1	345	gTt/gt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061091	38061091	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1293965921		P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	106	354	0	ENST00000250448.2:c.898G>A	p.Ala300Thr	p.A300T	ENST00000250448	NM_004496.3	300	Gcc/Acc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38591713	38591713	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	125	253	0	ENST00000299084.4:c.177del	p.Phe59LeufsTer62	p.F59Lfs*62	ENST00000299084	NM_152594.2	58	Ttt/tt																																																																															
B2M	567	MSKCC	GRCh37	15	45007687	45007687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	142	351	0	ENST00000558401.1:c.134G>A	p.Cys45Tyr	p.C45Y	ENST00000558401	NM_004048.2	45	tGc/tAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274090	10274090	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758117698		P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	130	392	0	ENST00000330684.3:c.179C>T	p.Ala60Val	p.A60V	ENST00000330684	NM_001134407.1	60	gCg/gTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	62	436	1	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
NF1	4763	MSKCC	GRCh37	17	29670149	29670149	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs777872719		P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	49	207	0	ENST00000358273.4:c.7188del	p.Tyr2398ThrfsTer20	p.Y2398Tfs*20	ENST00000358273	NM_001042492.2	2395	ttA/tt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	143	488	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533755	63533760	+	inframe_deletion	In_Frame_Del	DEL	GGGAGC	GGGAGC	-			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	143	466	0	ENST00000307078.5:c.1394_1399del	p.Arg465_Ser466del	p.R465_S466del	ENST00000307078	NM_004655.3	465	cGCTCCCcg/ccg																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733010	74733010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	38	335	0	ENST00000359995.5:c.233C>T	p.Ala78Val	p.A78V	ENST00000359995	NM_001195427.1	78	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	42	349	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262139	10262139	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	137	379	1	ENST00000340748.4:c.2152del	p.Met718CysfsTer59	p.M718Cfs*59	ENST00000340748		718	Atg/tg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288739	15288739	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1281467250		P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	72	280	1	ENST00000263388.2:c.4000del	p.Ala1334ProfsTer86	p.A1334Pfs*86	ENST00000263388	NM_000435.2	1334	Gcc/cc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905289	50905289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750144413		P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	59	503	0	ENST00000440232.2:c.497G>A	p.Arg166Gln	p.R166Q	ENST00000440232	NM_002691.3	166	cGg/cAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222708	5222708	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370399999		P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	31	316	0	ENST00000357368.4:c.3095G>A	p.Arg1032Gln	p.R1032Q	ENST00000357368	NM_002850.3	1032	cGg/cAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238958	5238958	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	83	395	0	ENST00000357368.4:c.1821del	p.Val608TrpfsTer30	p.V608Wfs*30	ENST00000357368	NM_002850.3	607	ccC/cc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794971	242794971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	42	436	0	ENST00000334409.5:c.238G>A	p.Ala80Thr	p.A80T	ENST00000334409	NM_005018.2	80	Gcc/Acc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	106	338	0	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21336681	21336681	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1366986114		P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	55	441	0	ENST00000215739.8:c.27del	p.Gln10ArgfsTer15	p.Q10Rfs*15	ENST00000215739	NM_006767.3	7	acG/ac																																																																															
TP63	8626	MSKCC	GRCh37	3	189526152	189526152	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751300168		P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	59	405	0	ENST00000264731.3:c.416C>T	p.Ala139Val	p.A139V	ENST00000264731	NM_003722.4	139	gCg/gTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	23	263	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	144	414	0	ENST00000257430.4:c.4393_4394dup	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	165	296	0	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67569823	67569823	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1230037871		P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	52	281	0	ENST00000274335.5:c.484C>T	p.Arg162Ter	p.R162*	ENST00000274335		162	Cga/Tga																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	70	237	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188854	32188854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1183058401		P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	107	445	0	ENST00000375023.3:c.700C>T	p.Arg234Trp	p.R234W	ENST00000375023	NM_004557.3	234	Cgg/Tgg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139566450	139566450	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370929489		P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	124	362	0	ENST00000308874.7:c.709G>A	p.Gly237Ser	p.G237S	ENST00000308874		237	Ggc/Agc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5066767	5066768	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	96	199	0	ENST00000381652.3:c.1310dup	p.Leu437PhefsTer12	p.L437Ffs*12	ENST00000381652	NM_004972.3	435	tat/taTt																																																																															
FANCC	2176	MSKCC	GRCh37	9	98003000	98003000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	121	201	0	ENST00000289081.3:c.276G>T	p.Trp92Cys	p.W92C	ENST00000289081	NM_000136.2	92	tgG/tgT																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913253	39913253	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	177	203	0	ENST00000378444.4:c.4862del	p.Pro1621GlnfsTer53	p.P1621Qfs*53	ENST00000378444	NM_001123385.1	1621	cCa/ca																																																																															
AKT1	207	MSKCC	GRCh37	14	105239909	105239911	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	85	387	0	ENST00000349310.3:c.709_711del	p.Phe237del	p.F237del	ENST00000349310	NM_001014432.1	237	TTC/-																																																																															
MGA	23269	MSKCC	GRCh37	15	42002988	42002988	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	145	304	0	ENST00000219905.7:c.2525T>C	p.Met842Thr	p.M842T	ENST00000219905	NM_001164273.1	842	aTg/aCg																																																																															
MGA	23269	MSKCC	GRCh37	15	42042163	42042163	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	41	312	0	ENST00000219905.7:c.6360del	p.Phe2120LeufsTer59	p.F2120Lfs*59	ENST00000219905	NM_001164273.1	2120	Ttt/tt																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348750	11348750	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	40	376	0	ENST00000332029.2:c.586del	p.Leu196SerfsTer9	p.L196Sfs*9	ENST00000332029	NM_003745.1	196	Ctc/tc																																																																															
NF1	4763	MSKCC	GRCh37	17	29490382	29490382	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754096545		P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	167	259	0	ENST00000358273.4:c.467G>A	p.Arg156His	p.R156H	ENST00000358273	NM_001042492.2	156	cGc/cAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29676191	29676191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	75	270	0	ENST00000358273.4:c.7243A>G	p.Thr2415Ala	p.T2415A	ENST00000358273	NM_001042492.2	2415	Aca/Gca																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489594	40489594	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762301765		P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	69	337	0	ENST00000264657.5:c.656G>A	p.Ser219Asn	p.S219N	ENST00000264657	NM_139276.2	219	aGt/aAt																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7980465	7980465	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	109	356	0	ENST00000319144.4:c.1118A>G	p.Asp373Gly	p.D373G	ENST00000319144	NM_001139.2	373	gAt/gGt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298099	15298099	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	110	326	0	ENST00000263388.2:c.1657C>A	p.Pro553Thr	p.P553T	ENST00000263388	NM_000435.2	553	Cca/Aca																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350246	15350246	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	41	402	0	ENST00000263377.2:c.3533A>G	p.Asp1178Gly	p.D1178G	ENST00000263377	NM_058243.2	1178	gAc/gGc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905283	50905283	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	60	487	0	ENST00000440232.2:c.491T>A	p.Leu164Gln	p.L164Q	ENST00000440232	NM_002691.3	164	cTg/cAg																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222256	6222256	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	156	467	1	ENST00000252674.7:c.986C>A	p.Pro329Gln	p.P329Q	ENST00000252674	NM_005934.3	329	cCg/cAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030744	48030746	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	101	357	0	ENST00000234420.5:c.3361_3363del	p.Glu1121del	p.E1121del	ENST00000234420	NM_000179.2	1120	GAG/-																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437806	52437807	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTTG			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	238	329	0	ENST00000460680.1:c.1354_1355insCAAGC	p.Leu452ProfsTer121	p.L452Pfs*121	ENST00000460680	NM_004656.3	452	ctc/cCAAGCtc																																																																															
APC	324	MSKCC	GRCh37	5	112128209	112128210	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	122	202	0	ENST00000257430.4:c.714dup	p.Ala239SerfsTer13	p.A239Sfs*13	ENST00000257430	NM_000038.5	238	caa/cAaa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86669989	86669989	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	42	186	0	ENST00000274376.6:c.1786C>A	p.Leu596Ile	p.L596I	ENST00000274376	NM_002890.2	596	Ctt/Att																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045889	26045889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	64	525	0	ENST00000540144.1:c.251G>A	p.Arg84His	p.R84H	ENST00000540144	NM_003531.2	84	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032880-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			422	105	587	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0032880-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			291	63	273	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133233964	133233964	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032880-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			386	71	476	0	ENST00000320574.5:c.3430A>G	p.Ile1144Val	p.I1144V	ENST00000320574	NM_006231.2	1144	Atc/Gtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033131-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			383	62	204	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs863224499		P-0033131-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			628	66	388	0	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11170805	11170805	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1029465394		P-0033131-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			532	35	277	0	ENST00000344626.4:c.4853G>A	p.Arg1618Gln	p.R1618Q	ENST00000344626	NM_003072.3	1618	cGa/cAa																																																																															
CTR9	9646	MSKCC	GRCh37	11	10785190	10785190	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033131-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			407	43	247	0	ENST00000361367.2:c.958G>A	p.Glu320Lys	p.E320K	ENST00000361367	NM_014633.3	320	Gaa/Aaa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12043184	12043184	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033131-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	24	193	0	ENST00000353533.5:c.1069A>G	p.Lys357Glu	p.K357E	ENST00000353533	NM_003010.3	357	Aag/Gag																																																																															
XIAP	331	MSKCC	GRCh37	X	123019993	123019993	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033131-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			620	42	320	0	ENST00000355640.3:c.481T>C	p.Tyr161His	p.Y161H	ENST00000355640		161	Tat/Cat																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033576-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			483	194	498	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0033576-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			503	188	515	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981783	70981783	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs776490147		P-0033576-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			695	235	559	0	ENST00000276594.2:c.313C>A	p.Pro105Thr	p.P105T	ENST00000276594	NM_024504.3	105	Ccc/Acc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120377	70120377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033576-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			945	275	606	0	ENST00000245479.2:c.1379C>T	p.Thr460Ile	p.T460I	ENST00000245479	NM_000346.3	460	aCc/aTc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508284	106508284	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033576-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			712	180	541	0	ENST00000359195.3:c.278C>A	p.Pro93Gln	p.P93Q	ENST00000359195	NM_002649.2	93	cCg/cAg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25462085	25462085	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1324347218		P-0033576-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			866	53	507	0	ENST00000264709.3:c.2323-1G>A		p.X775_splice	ENST00000264709	NM_175629.2	775																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033576-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			464	347	324	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602928	10602928	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033576-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			638	128	505	0	ENST00000171111.5:c.650A>C	p.Gln217Pro	p.Q217P	ENST00000171111	NM_203500.1	217	cAa/cCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25362786	25362786	+	3_prime_UTR_variant	3'UTR	SNP	C	C	G			P-0033576-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			763	62	375	0	ENST00000256078.4:c.*64G>C			ENST00000256078	NM_033360.2																																																																																	
ARID2	196528	MSKCC	GRCh37	12	46244789	46244789	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033576-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			801	109	521	0	ENST00000334344.6:c.2883G>T	p.Gln961His	p.Q961H	ENST00000334344	NM_152641.2	961	caG/caT																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664587	138664587	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033576-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			327	70	316	0	ENST00000330315.3:c.978C>A	p.Ser326Arg	p.S326R	ENST00000330315	NM_023067.3	326	agC/agA																																																																															
CDK6	1021	MSKCC	GRCh37	7	92462499	92462499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033576-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			651	253	470	0	ENST00000265734.4:c.139G>T	p.Val47Leu	p.V47L	ENST00000265734	NM_001259.6	47	Gtg/Ttg																																																																															
TERT	7015	MSKCC	GRCh37	5	1294582	1294582	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033576-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			825	166	583	0	ENST00000310581.5:c.419T>A	p.Leu140Gln	p.L140Q	ENST00000310581	NM_198253.2	140	cTg/cAg																																																																															
AR	367	MSKCC	GRCh37	X	66765193	66765193	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033576-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	35	176	0	ENST00000374690.3:c.205C>A	p.Gln69Lys	p.Q69K	ENST00000374690	NM_000044.3	69	Cag/Aag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98220306	98220306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033576-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			447	283	392	0	ENST00000331920.6:c.3157G>T	p.Ala1053Ser	p.A1053S	ENST00000331920	NM_000264.3	1053	Gcc/Tcc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976836	2976836	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033576-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			751	229	482	0	ENST00000396946.4:c.1176G>C	p.Gln392His	p.Q392H	ENST00000396946	NM_032415.4	392	caG/caC																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212537983	212537983	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0033576-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			738	39	392	0	ENST00000342788.4:c.1623-1G>A		p.X541_splice	ENST00000342788	NM_005235.2	541																																																																																
AR	367	MSKCC	GRCh37	X	66765184	66765184	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033576-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			243	48	159	0	ENST00000374690.3:c.196C>A	p.Gln66Lys	p.Q66K	ENST00000374690	NM_000044.3	66	Cag/Aag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859034	57859034	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs193921005		P-0033576-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			523	129	423	0	ENST00000228682.2:c.530G>A	p.Cys177Tyr	p.C177Y	ENST00000228682	NM_005269.2	177	tGc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0039617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	155	313	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120644	115120644	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			662	220	435	0	ENST00000257566.3:c.362C>A	p.Thr121Asn	p.T121N	ENST00000257566	NM_016569.3	121	aCc/aAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134825334	134825334	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			595	158	442	0	ENST00000398015.3:c.850T>A	p.Cys284Ser	p.C284S	ENST00000398015	NM_004441.4	284	Tgc/Agc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467964	66467964	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			473	114	353	0	ENST00000273854.3:c.305del	p.Cys102SerfsTer3	p.C102Sfs*3	ENST00000273854	NM_004439.5	102	tGc/tc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112317	115112317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			604	129	391	0	ENST00000257566.3:c.1423G>T	p.Gly475Cys	p.G475C	ENST00000257566	NM_016569.3	475	Ggc/Tgc																																																																															
WT1	7490	MSKCC	GRCh37	11	32438041	32438041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			326	217	325	0	ENST00000332351.3:c.996G>T	p.Gln332His	p.Q332H	ENST00000332351	NM_024426.4	332	caG/caT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32185036	32185037	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0039617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			556	114	394	0	ENST00000375023.3:c.1631_1632delinsAA	p.Ser544Ter	p.S544*	ENST00000375023	NM_004557.3	544	tCC/tAA																																																																															
CCND2	894	MSKCC	GRCh37	12	4398058	4398058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	170	356	0	ENST00000261254.3:c.622G>A	p.Gly208Arg	p.G208R	ENST00000261254	NM_001759.3	208	Gga/Aga																																																																															
TET1	80312	MSKCC	GRCh37	10	70333189	70333189	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			541	88	379	0	ENST00000373644.4:c.1094del	p.Leu365GlnfsTer49	p.L365Qfs*49	ENST00000373644	NM_030625.2	365	cTa/ca																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119624693	119624693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			322	116	281	0	ENST00000316626.5:c.722G>T	p.Trp241Leu	p.W241L	ENST00000316626		241	tGg/tTg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101867109	101867607	+	splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	GCGGTGCTGGGGCTGGCAGACCCCGCCCCCACGCGGCCTCTCGGAGCCGGGAGCCGATCGGGCCGGGGCTGGGGTCTGGCGGCCCAGCCCCCGGGGAGCGTGGGGCGTGGCCAGAAACCGGCGCTCGCGGCTGCGGATTGGCTGCCTGGCGGGCCCGCAGGCGGGGCTCCCGGCTGGGTCCCGCTTGGCAGCTCGCGGCGGCGGGGAGGCGGGGCCGGCGGGAGCCCGGCAGCCAATGGACGCGCGTCCTCCGAGCAGTTACAAAGGGCCGGAGCGAGGCCGCCGCGGCGGCTAGGGAGGTGGGGCGAGGCGAGGTTTGCTGGGGTGAGGCAGCGGCGCGGCCGGGCCGGGCCGGGCCACAGGCGGTGGCGGCGGGACCATGGAGGCGGCGGTCGCTGCTCCGCGTCCCCGGCTGCTCCTCCTCGTGCTGGCGGCGGCGGCGGCGGCGGCGGCGGCGCTGCTCCCGGGGGCGACGGGTGAGCGGCGGCGCGGCGGGCGG	GCGGTGCTGGGGCTGGCAGACCCCGCCCCCACGCGGCCTCTCGGAGCCGGGAGCCGATCGGGCCGGGGCTGGGGTCTGGCGGCCCAGCCCCCGGGGAGCGTGGGGCGTGGCCAGAAACCGGCGCTCGCGGCTGCGGATTGGCTGCCTGGCGGGCCCGCAGGCGGGGCTCCCGGCTGGGTCCCGCTTGGCAGCTCGCGGCGGCGGGGAGGCGGGGCCGGCGGGAGCCCGGCAGCCAATGGACGCGCGTCCTCCGAGCAGTTACAAAGGGCCGGAGCGAGGCCGCCGCGGCGGCTAGGGAGGTGGGGCGAGGCGAGGTTTGCTGGGGTGAGGCAGCGGCGCGGCCGGGCCGGGCCGGGCCACAGGCGGTGGCGGCGGGACCATGGAGGCGGCGGTCGCTGCTCCGCGTCCCCGGCTGCTCCTCCTCGTGCTGGCGGCGGCGGCGGCGGCGGCGGCGGCGCTGCTCCCGGGGGCGACGGGTGAGCGGCGGCGCGGCGGGCGG	-			P-0039617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			80	136	73	0				ENST00000374994	NM_004612.2			9-Jan																																																																														
APC	324	MSKCC	GRCh37	5	112176192	112176194	+	frameshift_variant	Frame_Shift_Del	DEL	CGG	CGG	TT			P-0039617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			452	176	425	0	ENST00000257430.4:c.4901_4903delinsTT	p.Pro1634LeufsTer16	p.P1634Lfs*16	ENST00000257430	NM_000038.5	1634	cCGGgg/cTTgg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	39	472	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692820	89692820	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0040775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	30	149	0	ENST00000371953.3:c.304A>T	p.Lys102Ter	p.K102*	ENST00000371953	NM_000314.4	102	Aaa/Taa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931859	68931859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	54	454	0	ENST00000288368.4:c.289C>A	p.Pro97Thr	p.P97T	ENST00000288368	NM_024870.2	97	Ccc/Acc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779723	3779724	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0040775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	36	476	2	ENST00000262367.5:c.5324_5325delinsAT	p.Cys1775Tyr	p.C1775Y	ENST00000262367	NM_004380.2	1775	tGC/tAT																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986899	36986899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054431-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			565	149	512	0	ENST00000354822.5:c.790G>A	p.Gly264Ser	p.G264S	ENST00000354822	NM_001079668.2	264	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0054431-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			575	165	398	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
MED12	9968	MSKCC	GRCh37	X	70339293	70339293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054431-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			587	149	373	0	ENST00000374080.3:c.170G>A	p.Gly57Asp	p.G57D	ENST00000374080		57	gGc/gAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0059008-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			406	604	355	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0059008-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			462	306	387	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241705	55241705	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059008-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			630	279	369	0	ENST00000275493.2:c.2153T>A	p.Leu718Gln	p.L718Q	ENST00000275493	NM_005228.3	718	cTg/cAg																																																																															
POT1	25913	MSKCC	GRCh37	7	124532412	124532412	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0059008-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			63	252	290	0	ENST00000357628.3:c.32A>C	p.Tyr11Ser	p.Y11S	ENST00000357628	NM_015450.2	11	tAt/tCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934573		P-0060514-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			472	145	347	0	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc																																																																															
KDR	3791	MSKCC	GRCh37	4	55956221	55956221	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs767542615		P-0060514-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			458	51	339	0	ENST00000263923.4:c.3094C>T	p.Arg1032Ter	p.R1032*	ENST00000263923	NM_002253.2	1032	Cga/Tga																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745928	162745928	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0060514-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			607	54	413	0	ENST00000367921.3:c.2051A>G	p.Tyr684Cys	p.Y684C	ENST00000367921	NM_006182.2	684	tAc/tGc																																																																															
KLF5	688	MSKCC	GRCh37	13	73636668	73636676	+	inframe_deletion	In_Frame_Del	DEL	AGTCCAGAT	AGTCCAGAT	-			P-0060514-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			911	232	569	0	ENST00000377687.4:c.933_941del	p.Ser311_Asp313del	p.S311_D313del	ENST00000377687	NM_001730.3	311	AGTCCAGAT/-																																																																															
NF1	4763	MSKCC	GRCh37	17	29556100	29556100	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060514-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	36	290	0	ENST00000358273.4:c.2468del	p.Gly823GlufsTer4	p.G823Efs*4	ENST00000358273	NM_001042492.2	823	Gga/ga																																																																															
APC	324	MSKCC	GRCh37	5	112175770	112175771	+	frameshift_variant	Frame_Shift_Ins	INS	GG	GG	AAA			P-0060514-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			578	73	447	0	ENST00000257430.4:c.4479_4480delinsAAA	p.Glu1494LysfsTer20	p.E1494Kfs*20	ENST00000257430	NM_000038.5	1493	acGGaa/acAAAaa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1632383	1632383	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0061001-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			327	149	455	0	ENST00000344749.5:c.167C>G	p.Ser56Ter	p.S56*	ENST00000344749	NM_001136139.2	56	tCa/tGa																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946192	13946192	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061001-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	21	384	0	ENST00000405192.2:c.904G>T	p.Glu302Ter	p.E302*	ENST00000405192	NM_001163147.1	302	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0061001-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			115	35	217	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579573	7579577	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGG	TTGGG	-			P-0061001-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	139	547	0	ENST00000269305.4:c.110_114del	p.Ser37CysfsTer4	p.S37Cfs*4	ENST00000269305	NM_001126112.2	37	tCCCAA/t																																																																															
ATR	545	MSKCC	GRCh37	3	142285010	142285011	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0061001-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			185	24	318	0	ENST00000350721.4:c.244_245del	p.Met82ValfsTer9	p.M82Vfs*9	ENST00000350721	NM_001184.3	82	ATg/g																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647224	23647224	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064515-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			315	74	374	0	ENST00000261584.4:c.643G>C	p.Glu215Gln	p.E215Q	ENST00000261584	NM_024675.3	215	Gaa/Caa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37864656	37864656	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs950730453		P-0064515-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			561	107	282	0	ENST00000269571.5:c.308G>A	p.Arg103Gln	p.R103Q	ENST00000269571		103	cGa/cAa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439227	52439227	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064515-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			358	95	330	0	ENST00000460680.1:c.1015C>G	p.Pro339Ala	p.P339A	ENST00000460680	NM_004656.3	339	Cca/Gca																																																																															
ROS1	6098	MSKCC	GRCh37	6	117714436	117714436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064515-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			218	54	421	0	ENST00000368508.3:c.1213C>T	p.Pro405Ser	p.P405S	ENST00000368508	NM_002944.2	405	Cca/Tca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873758	151873758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064515-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			448	78	510	0	ENST00000262189.6:c.8780C>T	p.Ser2927Phe	p.S2927F	ENST00000262189	NM_170606.2	2927	tCt/tTt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416948	416948	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384215		P-0064515-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	111	486	0	ENST00000399788.2:c.3602C>T	p.Ser1201Phe	p.S1201F	ENST00000399788	NM_001042603.1	1201	tCc/tTc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643498	38643498	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0064515-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			303	86	511	0	ENST00000299084.4:c.968C>G	p.Ser323Ter	p.S323*	ENST00000299084	NM_152594.2	323	tCa/tGa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349568	89349568	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064515-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			329	78	291	0	ENST00000301030.4:c.3382G>C	p.Asp1128His	p.D1128H	ENST00000301030	NM_001256183.1	1128	Gac/Cac																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046416	69046416	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064515-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			421	68	454	0	ENST00000288368.4:c.3889G>C	p.Glu1297Gln	p.E1297Q	ENST00000288368	NM_024870.2	1297	Gag/Cag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89825085	89825085	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064515-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			346	88	312	0	ENST00000389301.3:c.2881G>C	p.Glu961Gln	p.E961Q	ENST00000389301	NM_000135.2	961	Gag/Cag																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101867518	101867518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064515-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			219	66	366	0	ENST00000374994.4:c.31C>T	p.Arg11Trp	p.R11W	ENST00000374994	NM_004612.2	11	Cgg/Tgg																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631660	67631660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064515-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			283	48	600	0	ENST00000272342.5:c.1846G>A	p.Asp616Asn	p.D616N	ENST00000272342	NM_019002.3	616	Gat/Aat																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0065078-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			373	74	370	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111012	193111012	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065078-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			337	122	328	0	ENST00000367435.3:c.545T>A	p.Ile182Asn	p.I182N	ENST00000367435	NM_024529.4	182	aTt/aAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0065078-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			321	34	270	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581192	48581192	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065078-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			298	34	363	0	ENST00000342988.3:c.498del	p.Phe166LeufsTer36	p.F166Lfs*36	ENST00000342988	NM_005359.5	166	Ttt/tt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265643	10265643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065078-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			416	44	415	0	ENST00000340748.4:c.1534G>A	p.Val512Met	p.V512M	ENST00000340748		512	Gtg/Atg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056068	26056068	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065078-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			507	75	416	0	ENST00000343677.2:c.589G>T	p.Ala197Ser	p.A197S	ENST00000343677	NM_005319.3	197	Gcc/Tcc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244799	46244799	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065078-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			425	66	498	0	ENST00000334344.6:c.2893C>T	p.Gln965Ter	p.Q965*	ENST00000334344	NM_152641.2	965	Caa/Taa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675160	30675160	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0065078-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			432	33	427	0	ENST00000376406.3:c.3084+1G>T		p.X1028_splice	ENST00000376406	NM_014641.2	1028																																																																																
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs747342068		P-0065254-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			199	200	390	0	ENST00000269305.4:c.394A>C	p.Lys132Gln	p.K132Q	ENST00000269305	NM_001126112.2	132	Aag/Cag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0065254-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			149	191	294	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
ATM	472	MSKCC	GRCh37	11	108143301	108143301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065254-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			433	29	281	0	ENST00000278616.4:c.3120G>A	p.Met1040Ile	p.M1040I	ENST00000278616	NM_000051.3	1040	atG/atA																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488389	231488389	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs775875613		P-0065254-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			313	26	364	0	ENST00000295050.7:c.752T>A	p.Ile251Asn	p.I251N	ENST00000295050	NM_032018.5	251	aTc/aAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376503	118376503	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0065254-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			844	114	395	0	ENST00000534358.1:c.9896T>G	p.Phe3299Cys	p.F3299C	ENST00000534358	NM_005933.3	3299	tTt/tGt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934926	9934926	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065254-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			278	55	355	0	ENST00000330684.3:c.1364G>T	p.Cys455Phe	p.C455F	ENST00000330684	NM_001134407.1	455	tGc/tTc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71015051	71015051	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs754932182		P-0065254-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			435	47	323	0	ENST00000318789.4:c.1879A>G	p.Met627Val	p.M627V	ENST00000318789	NM_032682.5	627	Atg/Gtg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412291	63412291	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs138948924		P-0067752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	45	540	0	ENST00000330258.3:c.876G>C	p.Lys292Asn	p.K292N	ENST00000330258	NM_152424.3	292	aaG/aaC																																																																															
STK11	6794	MSKCC	GRCh37	19	1219322	1219322	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0067752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	12	458	0	ENST00000326873.7:c.375-1C>T		p.X125_splice	ENST00000326873	NM_000455.4	125																																																																																
CDK6	1021	MSKCC	GRCh37	7	92354975	92354975	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1287192342		P-0067752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	124	317	0	ENST00000265734.4:c.502C>T	p.Arg168Cys	p.R168C	ENST00000265734	NM_001259.6	168	Cgc/Tgc																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813418	102813418	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	20	435	0	ENST00000307046.8:c.271A>C	p.Ile91Leu	p.I91L	ENST00000307046	NM_001111285.1	91	Atc/Ctc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2220628	2220628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	98	461	0	ENST00000326181.6:c.245C>A	p.Thr82Asn	p.T82N	ENST00000326181	NM_032271.2	82	aCt/aAt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31380435	31380435	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	26	376	0	ENST00000328111.2:c.925G>T	p.Ala309Ser	p.A309S	ENST00000328111	NM_006892.3	309	Gct/Tct																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449457	149449989	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCAGGAGCCACTCCCCACGCTGTTGTGGGCCCTGCACTCGTAGGTTTGGTTGTGCTCTAAGGTCTCAACAGTCAGCAGGCTCTGCACCGTCACCTTGTGGAAGGGCTCCTGGCTCAGGACCTCAGGGTATGGGTCATCCCAGACCTGCAGCACTTGGGCCTCATCACACCTGGCAAAAGCAGAATGTGGCTCAGAGCTTCAGGGTTCCCAGCGCCAGCATGTCCCTCCCACTCACAGGGTGCCCAGCCCCTGAGCCCAGGTGAGGGAGGTGAGTGGAGCCCACTTACCTATCAGTGTGGCCACTGCACTGCAGCCATGTCACGTTGGGCTGGGGGTACCCAGAGGCAGCACACAAAAGGGTGCCAGAGCCGTTGATGAATGTCCATATGACGCTTACCTCTGGGGGGTCTGAGGAAGAAAGGAGGAGGCCCCAAGTCACACTTTCCCCGCCACCTCCCAATCTCCCAGTACCTACTTCCCTGTGCCCTGCCCCAGTCAACCCCATCCCTCCAGGCAGTCCCAGGGCCTCCGC	CCCAGGAGCCACTCCCCACGCTGTTGTGGGCCCTGCACTCGTAGGTTTGGTTGTGCTCTAAGGTCTCAACAGTCAGCAGGCTCTGCACCGTCACCTTGTGGAAGGGCTCCTGGCTCAGGACCTCAGGGTATGGGTCATCCCAGACCTGCAGCACTTGGGCCTCATCACACCTGGCAAAAGCAGAATGTGGCTCAGAGCTTCAGGGTTCCCAGCGCCAGCATGTCCCTCCCACTCACAGGGTGCCCAGCCCCTGAGCCCAGGTGAGGGAGGTGAGTGGAGCCCACTTACCTATCAGTGTGGCCACTGCACTGCAGCCATGTCACGTTGGGCTGGGGGTACCCAGAGGCAGCACACAAAAGGGTGCCAGAGCCGTTGATGAATGTCCATATGACGCTTACCTCTGGGGGGTCTGAGGAAGAAAGGAGGAGGCCCCAAGTCACACTTTCCCCGCCACCTCCCAATCTCCCAGTACCTACTTCCCTGTGCCCTGCCCCAGTCAACCCCATCCCTCCAGGCAGTCCCAGGGCCTCCGC	-			P-0067752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	70	364	0	ENST00000286301.3:c.1198+30_1489del		p.X400_splice	ENST00000286301	NM_005211.3	400																																																																																
BRCA2	675	MSKCC	GRCh37	13	32911404	32911404	+	stop_gained	Nonsense_Mutation	SNP	T	T	G	rs397507647		P-0067752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	113	333	0	ENST00000380152.3:c.2912T>G	p.Leu971Ter	p.L971*	ENST00000380152		971	tTa/tGa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59885856	59885858	+	frameshift_variant	Frame_Shift_Ins	INS	TTC	TTC	AGAAATT			P-0067752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	64	353	0	ENST00000259008.2:c.888_890delinsAATTTCT	p.Lys297IlefsTer23	p.K297Ifs*23	ENST00000259008	NM_032043.2	296	gaGAAg/gaAATTTCTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0067894-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			462	507	501	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453136	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-	rs397516897		P-0067894-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			239	101	375	0	ENST00000288602.6:c.1799_1801del	p.Val600_Lys601delinsGlu	p.V600_K601delinsE	ENST00000288602	NM_004333.4	600	gTGAaa/gaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913384		P-0067894-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			348	262	419	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272090	15272090	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067894-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			406	267	563	0	ENST00000263388.2:c.6349del	p.Ser2117ProfsTer32	p.S2117Pfs*32	ENST00000263388	NM_000435.2	2117	Tcc/cc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784932	9784932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067894-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			718	49	432	0	ENST00000377346.4:c.2935G>A	p.Ala979Thr	p.A979T	ENST00000377346	NM_005026.3	979	Gcc/Acc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435470	49435470	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1317305838		P-0067894-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			867	64	495	0	ENST00000301067.7:c.6202C>T	p.Arg2068Trp	p.R2068W	ENST00000301067	NM_003482.3	2068	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0068059-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			186	18	207	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0069784-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			334	9	297	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039363	47039363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069784-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			509	27	549	0	ENST00000329236.7:c.756del	p.Asn253ThrfsTer5	p.N253Tfs*5	ENST00000329236	NM_001204466.1	252	tCc/tc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30303633	30303633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069784-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			418	30	581	0	ENST00000262643.3:c.61G>T	p.Gly21Cys	p.G21C	ENST00000262643	NM_001238.2	21	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577061	7577062	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0070303-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			170	179	366	0	ENST00000269305.4:c.876_877del	p.Glu294AlafsTer11	p.E294Afs*11	ENST00000269305	NM_001126112.2	292	aaAGgg/aagg																																																																															
NF1	4763	MSKCC	GRCh37	17	29553474	29553474	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs779546178		P-0070303-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			113	315	304	0	ENST00000358273.4:c.2023G>T	p.Gly675Ter	p.G675*	ENST00000358273	NM_001042492.2	675	Gga/Tga																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0070999-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			149	201	395	0	ENST00000397752.3:c.3028+1G>A		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
SDHA	6389	MSKCC	GRCh37	5	235330	235330	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770719847		P-0070999-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			328	79	306	0	ENST00000264932.6:c.1136G>A	p.Arg379His	p.R379H	ENST00000264932	NM_004168.2	379	cGc/cAc																																																																															
CBFB	865	MSKCC	GRCh37	16	67063334	67063334	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070999-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			170	59	265	0	ENST00000412916.2:c.24G>C	p.Gln8His	p.Q8H	ENST00000412916		8	caG/caC																																																																															
AGO2	27161	MSKCC	GRCh37	8	141595332	141595332	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070999-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			233	88	394	0	ENST00000220592.5:c.101C>G	p.Ser34Cys	p.S34C	ENST00000220592	NM_012154.3	34	tCc/tGc																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518486	69518486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070999-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			175	84	249	0	ENST00000294312.3:c.159C>A	p.His53Gln	p.H53Q	ENST00000294312	NM_005117.2	53	caC/caA																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0071038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	48	286	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs879255270		P-0071038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	40	311	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140477837	140477851	+	inframe_deletion	In_Frame_Del	DEL	TAGGTGCTGTCACAT	TAGGTGCTGTCACAT	-			P-0071038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	43	220	0	ENST00000288602.6:c.1457_1471del	p.Asn486_Pro490del	p.N486_P490del	ENST00000288602	NM_004333.4	486	aATGTGACAGCACCTAca/aca																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082749	16082749	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0071038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	23	216	0	ENST00000281043.3:c.563A>C	p.Asp188Ala	p.D188A	ENST00000281043	NM_005378.4	188	gAt/gCt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2977657	2977657	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	28	250	0	ENST00000396946.4:c.1027del	p.Glu343ArgfsTer23	p.E343Rfs*23	ENST00000396946	NM_032415.4	343	Gag/ag																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569807	95569807	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	38	332	0	ENST00000343455.3:c.3926G>T	p.Gly1309Val	p.G1309V	ENST00000343455	NM_177438.2	1309	gGa/gTa																																																																															
CARM1	10498	MSKCC	GRCh37	19	11027436	11027436	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	42	382	0	ENST00000327064.4:c.1003T>A	p.Phe335Ile	p.F335I	ENST00000327064	NM_199141.1	335	Ttc/Atc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213800	66213800	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	27	245	0	ENST00000273854.3:c.2630G>T	p.Arg877Ile	p.R877I	ENST00000273854	NM_004439.5	877	aGa/aTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0072798-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			421	54	297	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602581	10602581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			73	50	300	0	ENST00000171111.5:c.997G>T	p.Gly333Cys	p.G333C	ENST00000171111	NM_203500.1	333	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			76	72	323	0	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770065	56770065	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs752608224		P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			158	23	241	0	ENST00000337432.4:c.61C>G	p.Pro21Ala	p.P21A	ENST00000337432	NM_058216.2	21	Cca/Gca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106649	27106649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			117	50	347	0	ENST00000324856.7:c.6260G>A	p.Gly2087Glu	p.G2087E	ENST00000324856	NM_006015.4	2087	gGa/gAa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624807	9624807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			117	65	264	0	ENST00000353224.5:c.170C>T	p.Ser57Leu	p.S57L	ENST00000353224	NM_177990.2	57	tCa/tTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426373	49426373	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	34	334	0	ENST00000301067.7:c.12115G>T	p.Glu4039Ter	p.E4039*	ENST00000301067	NM_003482.3	4039	Gag/Tag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911502	134911502	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			172	114	254	0	ENST00000398015.3:c.1967G>C	p.Gly656Ala	p.G656A	ENST00000398015	NM_004441.4	656	gGg/gCg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1977024	1977024	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201530243		P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			75	27	290	0	ENST00000382895.3:c.3518C>T	p.Thr1173Met	p.T1173M	ENST00000382895	NM_133330.2	1173	aCg/aTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799162	88799162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			34	60	248	0	ENST00000360948.2:c.223G>A	p.Asp75Asn	p.D75N	ENST00000360948	NM_001012338.2	75	Gac/Aac																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7982731	7982731	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			54	44	229	0	ENST00000319144.4:c.1054A>T	p.Met352Leu	p.M352L	ENST00000319144	NM_001139.2	352	Atg/Ttg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629492	187629492	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			72	16	300	0	ENST00000441802.2:c.1490A>T	p.Tyr497Phe	p.Y497F	ENST00000441802	NM_005245.3	497	tAc/tTc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981243	201981243	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			75	128	312	0	ENST00000359651.3:c.322G>T	p.Glu108Ter	p.E108*	ENST00000359651		108	Gag/Tag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437649	110437649	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			72	11	251	0	ENST00000375856.3:c.752C>G	p.Ser251Trp	p.S251W	ENST00000375856	NM_003749.2	251	tCg/tGg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027167	71027167	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			111	58	273	0	ENST00000318789.4:c.1160C>G	p.Ser387Ter	p.S387*	ENST00000318789	NM_032682.5	387	tCa/tGa																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424046	47424047	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			82	136	307	0	ENST00000404338.3:c.2118_2119del	p.Gly707ArgfsTer9	p.G707Rfs*9	ENST00000404338	NM_004491.4	705	aAG/a																																																																															
ATR	545	MSKCC	GRCh37	3	142275269	142275285	+	frameshift_variant	Frame_Shift_Del	DEL	TAAGATAAAAAATCCAC	TAAGATAAAAAATCCAC	-			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			179	43	248	0	ENST00000350721.4:c.2018_2034del	p.Ser673IlefsTer8	p.S673Ifs*8	ENST00000350721	NM_001184.3	673	aGTGGATTTTTTATCTTA/a																																																																															
RAD52	5893	MSKCC	GRCh37	12	1034671	1034671	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			143	30	278	0	ENST00000358495.3:c.488G>C	p.Gly163Ala	p.G163A	ENST00000358495	NM_134424.2	163	gGa/gCa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11307881	11307881	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			75	35	293	0	ENST00000361445.4:c.1111G>C	p.Asp371His	p.D371H	ENST00000361445	NM_004958.3	371	Gat/Cat																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981100	201981159	+	inframe_deletion	In_Frame_Del	DEL	TGGGGGAACAGCCCCAGTTCTGGTCGAAGACGCAGGTTCTGGACTGGATCAGCTACCAAG	TGGGGGAACAGCCCCAGTTCTGGTCGAAGACGCAGGTTCTGGACTGGATCAGCTACCAAG	-			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			74	108	247	0	ENST00000359651.3:c.182_241del	p.Gly61_Val80del	p.G61_V80del	ENST00000359651		60	tTGGGGGAACAGCCCCAGTTCTGGTCGAAGACGCAGGTTCTGGACTGGATCAGCTACCAAGtg/ttg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950037	38950037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	52	278	0	ENST00000357387.3:c.3913G>A	p.Ala1305Thr	p.A1305T	ENST00000357387	NM_152756.3	1305	Gca/Aca																																																																															
MGA	23269	MSKCC	GRCh37	15	42042052	42042052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			123	44	296	0	ENST00000219905.7:c.6247G>A	p.Val2083Ile	p.V2083I	ENST00000219905	NM_001164273.1	2083	Gtt/Att																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618374	37618374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			122	56	298	0	ENST00000447079.4:c.50C>G	p.Ala17Gly	p.A17G	ENST00000447079	NM_015083.1	17	gCt/gGt																																																																															
FYN	2534	MSKCC	GRCh37	6	112035552	112035552	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			135	19	206	0	ENST00000368678.4:c.342C>A	p.Ser114Arg	p.S114R	ENST00000368678		114	agC/agA																																																																															
EED	8726	MSKCC	GRCh37	11	85956276	85956276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			197	30	225	0	ENST00000263360.6:c.5C>T	p.Ser2Phe	p.S2F	ENST00000263360	NM_003797.3	2	tCc/tTc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562499	21562499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			42	26	195	0	ENST00000382592.4:c.1420G>T	p.Ala474Ser	p.A474S	ENST00000382592	NM_014572.2	474	Gcc/Tcc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151847992	151847992	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			142	10	207	0	ENST00000262189.6:c.12767A>G	p.Glu4256Gly	p.E4256G	ENST00000262189	NM_170606.2	4256	gAa/gGa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651296	52651308	+	protein_altering_variant	In_Frame_Del	DEL	ATAGTGCCTGGCA	ATAGTGCCTGGCA	T			P-0072947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			103	51	282	0	ENST00000394830.3:c.1788_1800delinsA	p.Asn596_Tyr600delinsLys	p.N596_Y600delinsK	ENST00000394830	NM_018313.4	596	aaTGCCAGGCACTAT/aaA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0073087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			499	20	333	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0073087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	10	180	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576870	7576870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs876659384		P-0073671-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			495	31	446	0	ENST00000269305.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000269305	NM_001126112.2	326	Gaa/Taa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105630	11105630	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0073671-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			414	25	383	0	ENST00000344626.4:c.1546A>T	p.Lys516Ter	p.K516*	ENST00000344626	NM_003072.3	516	Aag/Tag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562244	176562244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073671-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	14	0	0	ENST00000439151.2:c.140C>T	p.Thr47Ile	p.T47I	ENST00000439151	NM_022455.4	47	aCt/aTt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625128	69625128	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073671-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			283	13	0	0	ENST00000334134.2:c.665C>A	p.Pro222His	p.P222H	ENST00000334134	NM_005247.2	222	cCc/cAc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101908831	101908831	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1290088574		P-0073671-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	45	304	0	ENST00000374994.4:c.1195G>T	p.Ala399Ser	p.A399S	ENST00000374994	NM_004612.2	399	Gct/Tct																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858182	9858182	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073671-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			424	38	432	0	ENST00000330684.3:c.3219A>C	p.Glu1073Asp	p.E1073D	ENST00000330684	NM_001134407.1	1073	gaA/gaC																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965389	68965389	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073671-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	21	322	0	ENST00000288368.4:c.1001C>A	p.Ala334Glu	p.A334E	ENST00000288368	NM_024870.2	334	gCa/gAa																																																																															
STAT3	6774	MSKCC	GRCh37	17	40468833	40468833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073671-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			391	39	321	0	ENST00000264657.5:c.2231C>T	p.Ala744Val	p.A744V	ENST00000264657	NM_139276.2	744	gCt/gTt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509081	106509081	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073671-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			383	31	396	0	ENST00000359195.3:c.1075C>A	p.Arg359Ser	p.R359S	ENST00000359195	NM_002649.2	359	Cgc/Agc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221312	1221312	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074217-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			106	676	369	0	ENST00000326873.7:c.836del	p.Gly279AlafsTer8	p.G279Afs*8	ENST00000326873	NM_000455.4	279	Ggc/gc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15967427	15967427	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1468999160		P-0074217-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			291	185	323	0	ENST00000268712.3:c.5176C>T	p.Arg1726Trp	p.R1726W	ENST00000268712	NM_006311.3	1726	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0074217-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			56	665	208	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs876660821		P-0074780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	224	346	0	ENST00000269305.4:c.537T>G	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caG																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485748	57485748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	60	269	0	ENST00000371085.3:c.1049C>T	p.Thr350Ile	p.T350I	ENST00000371085	NM_000516.4	350	aCt/aTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266162	41266162	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	28	275	0	ENST00000349496.5:c.159G>C	p.Glu53Asp	p.E53D	ENST00000349496	NM_001904.3	53	gaG/gaC																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0075203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	140	326	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0075203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	63	327	1	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162475165	162475165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	64	359	0	ENST00000366898.1:c.576G>A	p.Met192Ile	p.M192I	ENST00000366898	NM_004562.2	192	atG/atA																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67575494	67575494	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0075203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	93	356	0	ENST00000274335.5:c.567T>G	p.Tyr189Ter	p.Y189*	ENST00000274335		189	taT/taG																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	48	404	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233090	69233090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1225914287		P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	52	453	1	ENST00000462284.1:c.961del	p.Leu321PhefsTer52	p.L321Ffs*52	ENST00000462284	NM_002392.5	319	Ccc/cc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31394066	31394066	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	54	300	0	ENST00000328111.2:c.2357del	p.Asn786ThrfsTer8	p.N786Tfs*8	ENST00000328111	NM_006892.3	785	Aaa/aa																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981721	101981721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	29	360	0	ENST00000282441.5:c.147del	p.Ala50ProfsTer24	p.A50Pfs*24	ENST00000282441	NM_001130145.2	48	Ccc/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			760	60	567	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	51	483	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185198261	185198261	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376662287		P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	56	404	0	ENST00000265026.3:c.2743C>T	p.Arg915Cys	p.R915C	ENST00000265026	NM_004721.4	915	Cgt/Tgt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231449	5231449	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	35	428	1	ENST00000357368.4:c.2027del	p.Pro676ArgfsTer134	p.P676Rfs*134	ENST00000357368	NM_002850.3	676	cCg/cg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844722	156844722	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs986498490		P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			754	63	571	0	ENST00000524377.1:c.1276G>A	p.Val426Ile	p.V426I	ENST00000524377	NM_002529.3	426	Gtc/Atc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879229	151879229	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs763438739		P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	57	447	0	ENST00000262189.6:c.5716C>T	p.Arg1906Ter	p.R1906*	ENST00000262189	NM_170606.2	1906	Cga/Tga																																																																															
ABL1	25	MSKCC	GRCh37	9	133759721	133759721	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs942920782		P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	58	417	0	ENST00000318560.5:c.2044C>T	p.Arg682Trp	p.R682W	ENST00000318560	NM_005157.4	682	Cgg/Tgg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430342	181430342	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	33	252	0	ENST00000325404.1:c.194A>G	p.Lys65Arg	p.K65R	ENST00000325404	NM_003106.3	65	aAg/aGg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2199922	2199922	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	46	301	1	ENST00000398665.3:c.691C>T	p.Arg231Ter	p.R231*	ENST00000398665	NM_032482.2	231	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229332	5229332	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1417612381		P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	46	437	0	ENST00000357368.4:c.2371G>A	p.Glu791Lys	p.E791K	ENST00000357368	NM_002850.3	791	Gaa/Aaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971042	21971042	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	58	386	0	ENST00000304494.5:c.316del	p.Val106CysfsTer40	p.V106Cfs*40	ENST00000304494	NM_000077.4	106	Gtg/tg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296357	15296358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	47	521	0	ENST00000263388.2:c.2084dup	p.Ser696GlufsTer7	p.S696Efs*7	ENST00000263388	NM_000435.2	695	ccg/ccCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	50	284	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143191850	143191850	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779307499		P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	42	313	0	ENST00000262992.4:c.581C>T	p.Ala194Val	p.A194V	ENST00000262992	NM_001101669.1	194	gCc/gTc																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150921733	150921733	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	50	491	0	ENST00000271640.5:c.1408del	p.Gln470LysfsTer18	p.Q470Kfs*18	ENST00000271640	NM_001145415.1	468	tCc/tc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79961166	79961166	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs572193350		P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	27	299	0	ENST00000265081.6:c.563G>A	p.Arg188His	p.R188H	ENST00000265081	NM_002439.4	188	cGt/cAt																																																																															
MITF	4286	MSKCC	GRCh37	3	70014383	70014383	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780036017		P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	66	374	0	ENST00000352241.4:c.1547C>T	p.Thr516Met	p.T516M	ENST00000352241	NM_198159.2	516	aCg/aTg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150923047	150923047	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1222977912		P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	51	366	0	ENST00000271640.5:c.1694G>A	p.Arg565His	p.R565H	ENST00000271640	NM_001145415.1	565	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578269	7578282	+	frameshift_variant	Frame_Shift_Del	DEL	GATGCTGAGGAGGG	GATGCTGAGGAGGG	-			P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	61	506	0	ENST00000269305.4:c.567_580del	p.Pro190TyrfsTer14	p.P190Yfs*14	ENST00000269305	NM_001126112.2	189	gcCCCTCCTCAGCATCtt/gctt																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150919476	150919476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	42	379	0	ENST00000271640.5:c.1255C>T	p.Arg419Cys	p.R419C	ENST00000271640	NM_001145415.1	419	Cgt/Tgt																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61310726	61310726	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs755647833		P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	16	99	0	ENST00000341074.5:c.86A>G	p.Tyr29Cys	p.Y29C	ENST00000341074	NM_002974.2	29	tAt/tGt																																																																															
CTR9	9646	MSKCC	GRCh37	11	10795619	10795619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			688	59	436	0	ENST00000361367.2:c.2788C>T	p.Pro930Ser	p.P930S	ENST00000361367	NM_014633.3	930	Cct/Tct																																																																															
MLH1	4292	MSKCC	GRCh37	3	37055922	37055922	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs267607784		P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	34	205	0	ENST00000231790.2:c.678-1G>T		p.X226_splice	ENST00000231790	NM_000249.3	226																																																																																
PAK1	5058	MSKCC	GRCh37	11	77047304	77047304	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	49	383	0	ENST00000356341.3:c.1240A>G	p.Ile414Val	p.I414V	ENST00000356341	NM_002576.4	414	Ata/Gta																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52595900	52595900	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	51	410	0	ENST00000394830.3:c.4015A>G	p.Ser1339Gly	p.S1339G	ENST00000394830	NM_018313.4	1339	Agt/Ggt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212522530	212522530	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	48	335	0	ENST00000342788.4:c.1895A>G	p.Asp632Gly	p.D632G	ENST00000342788	NM_005235.2	632	gAc/gGc																																																																															
CIC	23152	MSKCC	GRCh37	19	42798184	42798184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	54	512	1	ENST00000575354.2:c.4138G>A	p.Ala1380Thr	p.A1380T	ENST00000575354	NM_015125.3	1380	Gcc/Acc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555165	106555165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	60	398	0	ENST00000369096.4:c.2282C>T	p.Ala761Val	p.A761V	ENST00000369096	NM_001198.3	761	gCc/gTc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913399		P-0075513-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			115	16	269	0	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877365	28877365	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199779462		P-0075513-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	14	201	0	ENST00000282397.4:c.3956C>T	p.Ala1319Val	p.A1319V	ENST00000282397	NM_002019.4	1319	gCg/gTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347730	89347740	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGCAGTCGA	GGCGCAGTCGA	-			P-0075513-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			82	80	349	0	ENST00000301030.4:c.5210_5220del	p.Phe1737Ter	p.F1737*	ENST00000301030	NM_001256183.1	1737	tTCGACTGCGCC/t																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TC			P-0075770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	108	224	0	ENST00000256078.4:c.180_181inv	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggGAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587782197		P-0075770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	157	341	0	ENST00000269305.4:c.434T>C	p.Leu145Pro	p.L145P	ENST00000269305	NM_001126112.2	145	cTg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0075968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	62	316	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306602	41306602	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1419824411		P-0075968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	63	268	0	ENST00000373198.4:c.1057G>A	p.Asp353Asn	p.D353N	ENST00000373198	NM_133170.3	353	Gat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	39	165	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MGA	23269	MSKCC	GRCh37	15	41988508	41988508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	80	325	0	ENST00000219905.7:c.1300G>A	p.Asp434Asn	p.D434N	ENST00000219905	NM_001164273.1	434	Gac/Aac																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680894	30680894	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	62	299	0	ENST00000376406.3:c.825G>C	p.Lys275Asn	p.K275N	ENST00000376406	NM_014641.2	275	aaG/aaC																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0076072-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			280	91	343	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0076072-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			334	132	309	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266112	41266112	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913228		P-0076072-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			432	154	373	0	ENST00000349496.5:c.109T>C	p.Ser37Pro	p.S37P	ENST00000349496	NM_001904.3	37	Tct/Cct																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212578284	212578284	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076072-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			264	130	273	0	ENST00000342788.4:c.973C>A	p.Pro325Thr	p.P325T	ENST00000342788	NM_005235.2	325	Cct/Act																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0076122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	143	218	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0076122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	125	427	0	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151879136	151879136	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	111	510	0	ENST00000262189.6:c.5809C>T	p.Gln1937Ter	p.Q1937*	ENST00000262189	NM_170606.2	1937	Caa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152007140	152007140	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	246	355	0	ENST00000262189.6:c.760C>G	p.Arg254Gly	p.R254G	ENST00000262189	NM_170606.2	254	Cgt/Ggt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41203115	41203115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	132	439	0	ENST00000357654.3:c.5297T>C	p.Ile1766Thr	p.I1766T	ENST00000357654	NM_007294.3	1766	aTc/aCc																																																																															
NBN	4683	MSKCC	GRCh37	8	90993714	90993714	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	65	302	0	ENST00000265433.3:c.209A>T	p.Asp70Val	p.D70V	ENST00000265433	NM_002485.4	70	gAt/gTt																																																																															
CDH1	999	MSKCC	GRCh37	16	68772210	68772210	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	62	285	0	ENST00000261769.5:c.59G>C	p.Trp20Ser	p.W20S	ENST00000261769	NM_004360.3	20	tGg/tCg																																																																															
CBFB	865	MSKCC	GRCh37	16	67063718	67063718	+	splice_donor_variant	Splice_Site	DEL	T	T	-			P-0076122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	56	295	0	ENST00000412916.2:c.165+2del		p.X55_splice	ENST00000412916		55																																																																																
TBX3	6926	MSKCC	GRCh37	12	115120645	115120645	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	118	478	0	ENST00000257566.3:c.361del	p.Thr121ProfsTer18	p.T121Pfs*18	ENST00000257566	NM_016569.3	121	Acc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0076214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	12	481	1	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
TET2	54790	MSKCC	GRCh37	4	106164778	106164778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1009194427		P-0076216-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			283	74	201	0	ENST00000380013.4:c.3646C>T	p.Arg1216Ter	p.R1216*	ENST00000380013	NM_001127208.2	1216	Cga/Tga																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87636253	87636253	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076216-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			314	93	252	0	ENST00000277120.3:c.2418G>A	p.Trp806Ter	p.W806*	ENST00000277120		806	tgG/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0076216-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			139	95	182	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46242695	46242696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0076216-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			154	34	227	0	ENST00000334344.6:c.1658dup	p.Cys553TrpfsTer3	p.C553Wfs*3	ENST00000334344	NM_152641.2	553	tgc/tGgc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482873	67482873	+	stop_lost	Nonstop_Mutation	SNP	A	A	C			P-0076216-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			227	193	256	0	ENST00000327367.4:c.1277A>C	p.Ter426SerextTer6	p.*426Sext*6	ENST00000327367	NM_005902.3	426	tAg/tCg																																																																															
REST	5978	MSKCC	GRCh37	4	57777582	57777582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076216-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			320	74	306	0	ENST00000309042.7:c.778G>A	p.Glu260Lys	p.E260K	ENST00000309042	NM_005612.4	260	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0076663-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			378	95	338	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584607	48584607	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076663-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			342	71	396	0	ENST00000342988.3:c.781del	p.His261IlefsTer75	p.H261Ifs*75	ENST00000342988	NM_005359.5	260	taC/ta																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971176	21971177	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0076663-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			447	93	455	0	ENST00000304494.5:c.181dup	p.Glu61GlyfsTer59	p.E61Gfs*59	ENST00000304494	NM_000077.4	61	gag/gGag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076663-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	56	200	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134306	11134306	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0076663-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			285	51	294	0	ENST00000344626.4:c.2972A>T	p.Lys991Met	p.K991M	ENST00000344626	NM_003072.3	991	aAg/aTg																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858185	27858185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076663-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			536	97	411	0	ENST00000359303.2:c.386G>A	p.Arg129His	p.R129H	ENST00000359303	NM_003535.2	129	cGt/cAt																																																																															
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137852581		P-0076672-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			171	146	116	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436366	49436366	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076672-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			384	308	304	0	ENST00000301067.7:c.5845C>T	p.Gln1949Ter	p.Q1949*	ENST00000301067	NM_003482.3	1949	Cag/Tag																																																																															
TP63	8626	MSKCC	GRCh37	3	189526293	189526293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1489129378		P-0076672-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			449	347	295	0	ENST00000264731.3:c.557C>T	p.Thr186Ile	p.T186I	ENST00000264731	NM_003722.4	186	aCc/aTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1279525	1279525	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060503011		P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	28	299	0	ENST00000310581.5:c.2011C>T	p.Arg671Trp	p.R671W	ENST00000310581	NM_198253.2	671	Cgg/Tgg																																																																															
RB1	5925	MSKCC	GRCh37	13	48878062	48878062	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	37	297	2	ENST00000267163.4:c.19del	p.Arg7GlufsTer58	p.R7Efs*58	ENST00000267163	NM_000321.2	5	aCc/ac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713407	40713407	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768298187		P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			535	56	470	0	ENST00000373198.4:c.4108C>T	p.Arg1370Cys	p.R1370C	ENST00000373198	NM_133170.3	1370	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs587782082		P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			370	78	312	0	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8375969	8375969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1242333397		P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			441	37	268	0	ENST00000356435.5:c.4628C>T	p.Pro1543Leu	p.P1543L	ENST00000356435		1543	cCt/cTt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120647	94120647	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			466	40	338	0	ENST00000369303.4:c.404G>C	p.Gly135Ala	p.G135A	ENST00000369303	NM_004440.3	135	gGc/gCc																																																																															
RB1	5925	MSKCC	GRCh37	13	48916811	48916811	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	133	234	0	ENST00000267163.4:c.341C>A	p.Ser114Ter	p.S114*	ENST00000267163	NM_000321.2	114	tCg/tAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891335	151891335	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			383	61	256	0	ENST00000262189.6:c.4519G>T	p.Gly1507Ter	p.G1507*	ENST00000262189	NM_170606.2	1507	Gga/Tga																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245263	41245263	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	94	322	0	ENST00000357654.3:c.2285G>T	p.Arg762Ile	p.R762I	ENST00000357654	NM_007294.3	762	aGa/aTa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514967	103514967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			624	39	336	0	ENST00000355739.4:c.1468G>T	p.Asp490Tyr	p.D490Y	ENST00000355739	NM_000123.3	490	Gat/Tat																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934950	9934950	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs367543145		P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			403	93	272	0	ENST00000330684.3:c.1340A>G	p.Asn447Ser	p.N447S	ENST00000330684	NM_001134407.1	447	aAt/aGt																																																																															
XIAP	331	MSKCC	GRCh37	X	123020275	123020275	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			242	28	161	0	ENST00000355640.3:c.763A>T	p.Asn255Tyr	p.N255Y	ENST00000355640		255	Aat/Tat																																																																															
TET2	54790	MSKCC	GRCh37	4	106197023	106197023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			429	38	334	0	ENST00000380013.4:c.5356G>A	p.Glu1786Lys	p.E1786K	ENST00000380013	NM_001127208.2	1786	Gag/Aag																																																																															
PGR	5241	MSKCC	GRCh37	11	100933273	100933273	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			464	37	323	0	ENST00000325455.5:c.2117C>A	p.Thr706Lys	p.T706K	ENST00000325455	NM_001202474.3	706	aCa/aAa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265492	152265492	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	38	302	0	ENST00000206249.3:c.945G>T	p.Met315Ile	p.M315I	ENST00000206249	NM_000125.3	315	atG/atT																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432137	121432137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			350	24	378	0	ENST00000257555.6:c.884C>A	p.Pro295Gln	p.P295Q	ENST00000257555		295	cCg/cAg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61726866	61726866	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			549	49	259	0	ENST00000401558.2:c.572C>G	p.Ser191Cys	p.S191C	ENST00000401558	NM_003400.3	191	tCt/tGt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075117	16075117	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	25	253	0	ENST00000268712.3:c.435G>T	p.Lys145Asn	p.K145N	ENST00000268712	NM_006311.3	145	aaG/aaT																																																																															
TERT	7015	MSKCC	GRCh37	5	1282294	1282589	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTTCTGCTTTACAAACCCTAGAGACCACTTGGCACAAACTCCTGATTTTACAAGTAAGAGAACGTGAGCTCCAGGCAGTCAGAGCCTTGCACAGAATCCACTTGGACCAGGCCTGTGACGGGGCCCCTGGCTCCCAGCCCAGAGCTGCACAGCCAGGGAAGCACAGGCAAGTGGAGACAGGCGCATGCTGAGGCCGGGCTGGTGTTCCAGGACTTCGAGAAGCAGAGGCCTGGCGTGGGGATACAGTACCTGATTCCAATGCTTTGCAACTTGCTCCAGACACTCTTCCGGTAGA	CCTTCTGCTTTACAAACCCTAGAGACCACTTGGCACAAACTCCTGATTTTACAAGTAAGAGAACGTGAGCTCCAGGCAGTCAGAGCCTTGCACAGAATCCACTTGGACCAGGCCTGTGACGGGGCCCCTGGCTCCCAGCCCAGAGCTGCACAGCCAGGGAAGCACAGGCAAGTGGAGACAGGCGCATGCTGAGGCCGGGCTGGTGTTCCAGGACTTCGAGAAGCAGAGGCCTGGCGTGGGGATACAGTACCTGATTCCAATGCTTTGCAACTTGCTCCAGACACTCTTCCGGTAGA	-			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			38	14	55	0	ENST00000310581.5:c.1724_1769+250del		p.X575_splice	ENST00000310581	NM_198253.2	575																																																																																
DNMT3B	1789	MSKCC	GRCh37	20	31383468	31383468	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			486	42	343	0	ENST00000328111.2:c.1265C>G	p.Ser422Ter	p.S422*	ENST00000328111	NM_006892.3	422	tCa/tGa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94197384	94197384	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			473	53	290	0	ENST00000323929.3:c.1120G>C	p.Glu374Gln	p.E374Q	ENST00000323929	NM_005591.3	374	Gaa/Caa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933509	36933509	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	80	455	0	ENST00000361632.4:c.1778C>G	p.Ala593Gly	p.A593G	ENST00000361632		593	gCc/gGc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31383248	31383248	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			590	47	357	0	ENST00000328111.2:c.1160C>G	p.Ser387Ter	p.S387*	ENST00000328111	NM_006892.3	387	tCa/tGa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658711	3658711	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			473	68	399	0	ENST00000294008.3:c.255G>C	p.Gln85His	p.Q85H	ENST00000294008	NM_032444.2	85	caG/caC																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375283	15375283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	30	351	0	ENST00000263377.2:c.1144G>A	p.Val382Met	p.V382M	ENST00000263377	NM_058243.2	382	Gtg/Atg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675714	30675714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			628	41	337	0	ENST00000376406.3:c.2642C>A	p.Ala881Glu	p.A881E	ENST00000376406	NM_014641.2	881	gCa/gAa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426827	121426827	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			430	26	308	0	ENST00000257555.6:c.518T>A	p.Val173Glu	p.V173E	ENST00000257555		173	gTg/gAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121106	11121106	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	91	349	0	ENST00000344626.4:c.2173del	p.Ala725HisfsTer49	p.A725Hfs*49	ENST00000344626	NM_003072.3	725	Gca/ca																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118368742	118368742	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			512	61	303	0	ENST00000534358.1:c.5756G>T	p.Gly1919Val	p.G1919V	ENST00000534358	NM_005933.3	1919	gGa/gTa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647169	23647169	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			676	44	373	0	ENST00000261584.4:c.698T>G	p.Val233Gly	p.V233G	ENST00000261584	NM_024675.3	233	gTt/gGt																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969950	161969950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			324	52	284	0	ENST00000366898.1:c.1019G>T	p.Gly340Val	p.G340V	ENST00000366898	NM_004562.2	340	gGg/gTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399991	139399991	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			362	71	388	0	ENST00000277541.6:c.4357G>T	p.Glu1453Ter	p.E1453*	ENST00000277541	NM_017617.3	1453	Gag/Tag																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61305183	61305183	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	34	346	0	ENST00000341074.5:c.943T>C	p.Ser315Pro	p.S315P	ENST00000341074	NM_002974.2	315	Tca/Cca																																																																															
BRAF	673	MSKCC	GRCh37	7	140482873	140482873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			530	137	417	0	ENST00000288602.6:c.1262G>T	p.Gly421Val	p.G421V	ENST00000288602	NM_004333.4	421	gGa/gTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730875	40730877	+	frameshift_variant	Frame_Shift_Ins	INS	CCG	CCG	TCCT			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			436	41	391	0	ENST00000373198.4:c.3658_3660delinsAGGA	p.Asn1221LysfsTer3	p.N1221Kfs*3	ENST00000373198	NM_133170.3	1220	CGG/AGGA																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522506	157522509	+	missense_variant	Missense_Mutation	ONP	CCGG	CCGG	ACAT			P-0076697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			613	45	407	0	ENST00000346085.5:c.4778_4781delinsACAT	p.Thr1593_Gly1594delinsAsnMet	p.T1593_G1594delinsNM	ENST00000346085	NM_020732.3	1593	aCCGGg/aACATg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518261	8518261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076698-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			527	37	428	0	ENST00000356435.5:c.1130G>T	p.Arg377Leu	p.R377L	ENST00000356435		377	cGc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076698-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			483	88	329	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5077501	5077501	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076698-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			266	21	285	0	ENST00000381652.3:c.1913T>C	p.Leu638Pro	p.L638P	ENST00000381652	NM_004972.3	638	cTg/cCg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346364	73346364	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076748-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			452	12	246	0	ENST00000377767.4:c.1436A>G	p.Asp479Gly	p.D479G	ENST00000377767	NM_014953.3	479	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0076749-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			188	175	421	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40498610	40498610	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0076749-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			285	129	250	0	ENST00000264657.5:c.250C>T	p.Arg84Ter	p.R84*	ENST00000264657	NM_139276.2	84	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076749-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			296	123	254	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0076750-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			433	29	333	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89371644	89371644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs949172972		P-0076750-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	28	390	0	ENST00000301030.4:c.196G>A	p.Ala66Thr	p.A66T	ENST00000301030	NM_001256183.1	66	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0076750-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			297	22	252	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117709117	117709117	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076750-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			492	39	373	0	ENST00000368508.3:c.1840G>T	p.Val614Leu	p.V614L	ENST00000368508	NM_002944.2	614	Gta/Tta																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442074	52442074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076766-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			312	230	482	1	ENST00000460680.1:c.275C>T	p.Ala92Val	p.A92V	ENST00000460680	NM_004656.3	92	gCa/gTa																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			117	125	729	1	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			151	177	749	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			54	16	205	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			186	58	617	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			204	38	574	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			245	36	688	0	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
CIC	23152	MSKCC	GRCh37	19	42796883	42796883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			288	49	764	3	ENST00000575354.2:c.3347del	p.Pro1116GlnfsTer45	p.P1116Qfs*45	ENST00000575354	NM_015125.3	1114	gCc/gc																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			116	65	376	1	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			231	69	564	2	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			246	53	689	1	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
POLE	5426	MSKCC	GRCh37	12	133257249	133257249	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060500889		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			130	47	445	0	ENST00000320574.5:c.229C>T	p.Arg77Cys	p.R77C	ENST00000320574	NM_006231.2	77	Cgc/Tgc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			115	39	548	0	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821890	72821890	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			266	54	670	0	ENST00000268489.5:c.10285del	p.Arg3429ValfsTer56	p.R3429Vfs*56	ENST00000268489	NM_006885.3	3429	Cgt/gt																																																																															
RB1	5925	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587776783		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			56	17	324	0	ENST00000267163.4:c.1215+1G>A		p.X405_splice	ENST00000267163	NM_000321.2	405																																																																																
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			141	27	552	4	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs80357522		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			145	32	497	1	ENST00000357654.3:c.1961del	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																															
TSC1	7248	MSKCC	GRCh37	9	135777085	135777085	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1331635112		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			146	41	310	0	ENST00000298552.3:c.2393C>T	p.Thr798Met	p.T798M	ENST00000298552	NM_001162426.1	798	aCg/aTg																																																																															
MDM4	4194	MSKCC	GRCh37	1	204495546	204495546	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1365149083		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			157	52	356	0	ENST00000367182.3:c.137T>C	p.Met46Thr	p.M46T	ENST00000367182	NM_001278516.1	46	aTg/aCg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278073	18278073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			315	96	536	0	ENST00000222254.8:c.1693C>T	p.Pro565Ser	p.P565S	ENST00000222254	NM_005027.3	565	Ccg/Tcg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			120	33	497	5	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662458	227662458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			208	71	522	0	ENST00000305123.5:c.997G>A	p.Glu333Lys	p.E333K	ENST00000305123	NM_005544.2	333	Gaa/Aaa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276861	15276861	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			142	52	590	2	ENST00000263388.2:c.5404del	p.Ala1802LeufsTer23	p.A1802Lfs*23	ENST00000263388	NM_000435.2	1802	Gct/ct																																																																															
CARD11	84433	MSKCC	GRCh37	7	2951813	2951813	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377327574		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			181	50	497	1	ENST00000396946.4:c.3137C>T	p.Ala1046Val	p.A1046V	ENST00000396946	NM_032415.4	1046	gCc/gTc																																																																															
EP300	2033	MSKCC	GRCh37	22	41574679	41574679	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			267	77	731	1	ENST00000263253.7:c.6970del	p.His2324ThrfsTer29	p.H2324Tfs*29	ENST00000263253	NM_001429.3	2322	Ccc/cc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885578	111885578	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs751470371		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			369	39	562	0	ENST00000341259.2:c.1355C>G	p.Ala452Gly	p.A452G	ENST00000341259	NM_005475.2	452	gCc/gGc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905324	50905324	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			181	66	731	2	ENST00000440232.2:c.537del	p.Arg180GlyfsTer3	p.R180Gfs*3	ENST00000440232	NM_002691.3	178	Ggg/gg																																																																															
BARD1	580	MSKCC	GRCh37	2	215645974	215645975	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs587780033		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			80	28	501	3	ENST00000260947.4:c.623dup	p.Lys209GlufsTer5	p.K209Efs*5	ENST00000260947	NM_000465.2	208	aag/aaAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900661	3900661	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			195	77	589	1	ENST00000262367.5:c.435del	p.Ala146LeufsTer6	p.A146Lfs*6	ENST00000262367	NM_004380.2	145	ccC/cc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563047	21563047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			147	47	603	0	ENST00000382592.4:c.872C>T	p.Thr291Met	p.T291M	ENST00000382592	NM_014572.2	291	aCg/aTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			97	15	437	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			224	64	719	2	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508563	106508563	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757016725		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			207	50	417	1	ENST00000359195.3:c.557C>T	p.Ala186Val	p.A186V	ENST00000359195	NM_002649.2	186	gCg/gTg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39278407	39278407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			64	34	408	0	ENST00000402219.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000402219	NM_005633.3	248	Cgc/Tgc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807536	1807536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			171	67	624	0	ENST00000260795.2:c.1705G>A	p.Ala569Thr	p.A569T	ENST00000260795		569	Gcg/Acg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048145	180048145	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758234191		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			137	49	601	0	ENST00000261937.6:c.2128G>A	p.Val710Met	p.V710M	ENST00000261937	NM_182925.4	710	Gtg/Atg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78727975	78727975	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148973724		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			217	50	512	0	ENST00000306801.3:c.820G>A	p.Ala274Thr	p.A274T	ENST00000306801	NM_020761.2	274	Gcc/Acc																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735359	204735359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			238	64	527	0	ENST00000302823.3:c.160G>A	p.Ala54Thr	p.A54T	ENST00000302823	NM_005214.4	54	Gcc/Acc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202759	16202759	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375675403		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			235	64	517	0	ENST00000375759.3:c.467C>T	p.Thr156Met	p.T156M	ENST00000375759	NM_015001.2	156	aCg/aTg																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239020	31239020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			34	17	180	0	ENST00000376228.5:c.449T>C	p.Leu150Pro	p.L150P	ENST00000376228	NM_002117.5	150	cTg/cCg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28883002	28883002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs115595062		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			83	29	413	0	ENST00000282397.4:c.3698C>T	p.Pro1233Leu	p.P1233L	ENST00000282397	NM_002019.4	1233	cCg/cTg																																																																															
MSI1	4440	MSKCC	GRCh37	12	120785284	120785284	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775588129		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			298	79	584	1	ENST00000257552.2:c.824C>T	p.Ala275Val	p.A275V	ENST00000257552	NM_002442.3	275	gCg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3795303	3795303	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057521558		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			180	56	511	0	ENST00000262367.5:c.3889C>T	p.His1297Tyr	p.H1297Y	ENST00000262367	NM_004380.2	1297	Cac/Tac																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			223	66	618	2	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			134	70	469	1	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40359677	40359677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			212	38	419	0	ENST00000293328.3:c.1976G>A	p.Arg659His	p.R659H	ENST00000293328	NM_012448.3	659	cGc/cAc																																																																															
ARAF	369	MSKCC	GRCh37	X	47430750	47430750	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1488217404		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			217	49	615	1	ENST00000377045.4:c.1715G>A	p.Arg572Gln	p.R572Q	ENST00000377045	NM_001654.4	572	cGg/cAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097625	11097625	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			198	57	572	2	ENST00000344626.4:c.810del	p.Met272CysfsTer31	p.M272Cfs*31	ENST00000344626	NM_003072.3	269	Ccc/cc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180045890	180045890	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868478447		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			100	52	573	0	ENST00000261937.6:c.2881C>T	p.Arg961Cys	p.R961C	ENST00000261937	NM_182925.4	961	Cgc/Tgc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434939	110434941	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-	rs1262166340		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			270	57	670	0	ENST00000375856.3:c.3460_3462del	p.Ser1154del	p.S1154del	ENST00000375856	NM_003749.2	1154	TCC/-																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445207	29445208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			226	68	535	0	ENST00000544604.2:c.1046_1047dup	p.Glu350TrpfsTer14	p.E350Wfs*14	ENST00000544604	NM_001206998.1	346	-/GT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821596	72821596	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1345510678		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			92	25	522	0	ENST00000268489.5:c.10579G>A	p.Gly3527Ser	p.G3527S	ENST00000268489	NM_006885.3	3527	Ggc/Agc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437401	110437401	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			129	38	368	0	ENST00000375856.3:c.1000A>G	p.Ser334Gly	p.S334G	ENST00000375856	NM_003749.2	334	Agc/Ggc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610562	10610562	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			261	69	601	0	ENST00000171111.5:c.148C>A	p.Arg50Ser	p.R50S	ENST00000171111	NM_203500.1	50	Cgc/Agc																																																																															
PARP1	142	MSKCC	GRCh37	1	226567324	226567324	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			81	27	421	0	ENST00000366794.5:c.1562del	p.Lys521ArgfsTer3	p.K521Rfs*3	ENST00000366794	NM_001618.3	521	aAg/ag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528757	157528757	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751652188		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			138	63	521	0	ENST00000346085.5:c.6482G>A	p.Ser2161Asn	p.S2161N	ENST00000346085	NM_020732.3	2161	aGc/aAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76940443	76940443	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			60	23	419	0	ENST00000373344.5:c.650A>T	p.Asp217Val	p.D217V	ENST00000373344	NM_000489.3	217	gAt/gTt																																																																															
GNB1	2782	MSKCC	GRCh37	1	1720560	1720560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			252	82	508	0	ENST00000378609.4:c.848G>A	p.Arg283His	p.R283H	ENST00000378609	NM_002074.3	283	cGc/cAc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21351626	21351626	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749366666		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			174	52	478	0	ENST00000215739.8:c.2512G>A	p.Ala838Thr	p.A838T	ENST00000215739	NM_006767.3	838	Gcc/Acc																																																																															
LMO1	4004	MSKCC	GRCh37	11	8251947	8251947	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			194	67	632	0	ENST00000335790.3:c.130T>C	p.Trp44Arg	p.W44R	ENST00000335790	NM_002315.2	44	Tgg/Cgg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39542573	39542573	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778669649		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			194	58	476	0	ENST00000262039.4:c.377C>T	p.Thr126Met	p.T126M	ENST00000262039	NM_002647.2	126	aCg/aTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133202864	133202864	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			206	53	556	0	ENST00000320574.5:c.6370A>G	p.Lys2124Glu	p.K2124E	ENST00000320574	NM_006231.2	2124	Aag/Gag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8633325	8633325	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			138	32	464	0	ENST00000356435.5:c.344T>A	p.Val115Asp	p.V115D	ENST00000356435		115	gTt/gAt																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1315012	1315012	+	downstream_gene_variant	3'Flank	SNP	C	C	T	rs1157462187		P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			151	32	509	0				ENST00000381566																																																																																		
KDM5C	8242	MSKCC	GRCh37	X	53222162	53222162	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			160	61	541	0	ENST00000375401.3:c.4670A>G	p.Gln1557Arg	p.Q1557R	ENST00000375401	NM_004187.3	1557	cAg/cGg																																																																															
MGA	23269	MSKCC	GRCh37	15	41988396	41988396	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			129	31	517	0	ENST00000219905.7:c.1188C>A	p.Cys396Ter	p.C396*	ENST00000219905	NM_001164273.1	396	tgC/tgA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448513	49448515	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			384	97	591	0	ENST00000301067.7:c.196_198del	p.Cys66del	p.C66del	ENST00000301067	NM_003482.3	66	TGT/-																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647406	23647406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			132	21	449	0	ENST00000261584.4:c.461C>T	p.Thr154Ile	p.T154I	ENST00000261584	NM_024675.3	154	aCa/aTa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95563010	95563010	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			219	74	567	0	ENST00000343455.3:c.4247A>G	p.Asp1416Gly	p.D1416G	ENST00000343455	NM_177438.2	1416	gAt/gGt																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150921619	150921619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076767-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			186	48	512	0	ENST00000271640.5:c.1289C>A	p.Pro430His	p.P430H	ENST00000271640	NM_001145415.1	430	cCt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0076769-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			227	59	364	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0076769-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	115	396	0	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076769-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			137	39	168	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647415	23647415	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076769-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			221	62	316	0	ENST00000261584.4:c.452A>G	p.Gln151Arg	p.Q151R	ENST00000261584	NM_024675.3	151	cAg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076774-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			239	168	266	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KLF5	688	MSKCC	GRCh37	13	73649903	73649903	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076774-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			306	170	421	0	ENST00000377687.4:c.1253A>C	p.Asp418Ala	p.D418A	ENST00000377687	NM_001730.3	418	gAt/gCt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602757	10602757	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076774-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	439	334	0	ENST00000171111.5:c.821A>G	p.His274Arg	p.H274R	ENST00000171111	NM_203500.1	274	cAc/cGc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220399	1220400	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	CT			P-0076774-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			149	341	267	0	ENST00000326873.7:c.492_493delinsCT	p.Glu165Ter	p.E165*	ENST00000326873	NM_000455.4	164	ctGGag/ctCTag																																																																															
APC	324	MSKCC	GRCh37	5	112173335	112173335	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0076774-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			140	186	421	0	ENST00000257430.4:c.2044G>T	p.Gly682Ter	p.G682*	ENST00000257430	NM_000038.5	682	Gga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0076774-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			143	370	512	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
MGA	23269	MSKCC	GRCh37	15	41988348	41988354	+	frameshift_variant	Frame_Shift_Del	DEL	TATTAAA	TATTAAA	-			P-0076774-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			140	142	340	0	ENST00000219905.7:c.1140_1146del	p.Ile381ArgfsTer4	p.I381Rfs*4	ENST00000219905	NM_001164273.1	380	gtTATTAAA/gt																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458613	12458613	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs148844673		P-0076774-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			339	85	396	0	ENST00000287820.6:c.1230C>A	p.Ser410Arg	p.S410R	ENST00000287820	NM_015869.4	410	agC/agA																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143003222	143003222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076774-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			280	68	317	0	ENST00000262992.4:c.2604C>G	p.His868Gln	p.H868Q	ENST00000262992	NM_001101669.1	868	caC/caG																																																																															
EP300	2033	MSKCC	GRCh37	22	41573977	41573977	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201569846		P-0076807-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	117	495	0	ENST00000263253.7:c.6262C>T	p.Arg2088Trp	p.R2088W	ENST00000263253	NM_001429.3	2088	Cgg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5265144	5265144	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769916725		P-0076807-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	226	431	0	ENST00000357368.4:c.443G>A	p.Arg148Gln	p.R148Q	ENST00000357368	NM_002850.3	148	cGg/cAg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129201	64129201	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076807-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	94	500	0	ENST00000334205.4:c.739C>A	p.Gln247Lys	p.Q247K	ENST00000334205	NM_003942.2	247	Cag/Aag																																																																															
KDR	3791	MSKCC	GRCh37	4	55953823	55953823	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076807-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	61	360	0	ENST00000263923.4:c.3613G>C	p.Glu1205Gln	p.E1205Q	ENST00000263923	NM_002253.2	1205	Gag/Cag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0076826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			107	42	200	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CIC	23152	MSKCC	GRCh37	19	42793442	42793442	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748865223		P-0076826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	52	503	0	ENST00000575354.2:c.1244G>A	p.Arg415Gln	p.R415Q	ENST00000575354	NM_015125.3	415	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578440	7578440	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs879254249		P-0076826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	143	516	0	ENST00000269305.4:c.490A>G	p.Lys164Glu	p.K164E	ENST00000269305	NM_001126112.2	164	Aag/Gag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604754	48604754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0076826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	96	444	0	ENST00000342988.3:c.1576G>A	p.Glu526Lys	p.E526K	ENST00000342988	NM_005359.5	526	Gaa/Aaa																																																																															
CUL3	8452	MSKCC	GRCh37	2	225362561	225362561	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	114	246	0	ENST00000264414.4:c.1616A>G	p.Tyr539Cys	p.Y539C	ENST00000264414	NM_003590.4	539	tAc/tGc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962788	2962788	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201948130		P-0076826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	32	282	0	ENST00000396946.4:c.2120G>A	p.Arg707His	p.R707H	ENST00000396946	NM_032415.4	707	cGt/cAt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627877	37627877	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			2152	195	451	0	ENST00000447079.4:c.1792C>T	p.Gln598Ter	p.Q598*	ENST00000447079	NM_015083.1	598	Cag/Tag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346079	89346126	+	inframe_deletion	In_Frame_Del	DEL	CGGGGCCGGCACCGTCTGCGGCCTGAGCTTGTGCCACAGTGTTCGGGG	CGGGGCCGGCACCGTCTGCGGCCTGAGCTTGTGCCACAGTGTTCGGGG	-			P-0076826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	20	128	1	ENST00000301030.4:c.6824_6871del	p.Ala2275_Pro2290del	p.A2275_P2290del	ENST00000301030	NM_001256183.1	2275	gCCCCGAACACTGTGGCACAAGCTCAGGCCGCAGACGGTGCCGGCCCCGag/gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0076842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	579	405	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118365075	118365075	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs886041896		P-0076842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	113	329	0	ENST00000534358.1:c.5251A>T	p.Lys1751Ter	p.K1751*	ENST00000534358	NM_005933.3	1751	Aaa/Taa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857373	9857373	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			830	210	351	0	ENST00000330684.3:c.4028T>G	p.Leu1343Arg	p.L1343R	ENST00000330684	NM_001134407.1	1343	cTt/cGt																																																																															
RB1	5925	MSKCC	GRCh37	13	48934157	48934157	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	72	190	0	ENST00000267163.4:c.612A>C	p.Glu204Asp	p.E204D	ENST00000267163	NM_000321.2	204	gaA/gaC																																																																															
FANCA	2175	MSKCC	GRCh37	16	89825106	89825106	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0076842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	285	404	0	ENST00000389301.3:c.2860T>G	p.Phe954Val	p.F954V	ENST00000389301	NM_000135.2	954	Ttc/Gtc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0076888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	178	299	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578402	7578404	+	inframe_deletion	In_Frame_Del	DEL	GCA	GCA	-			P-0076888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	400	381	0	ENST00000269305.4:c.526_528del	p.Cys176del	p.C176del	ENST00000269305	NM_001126112.2	176	TGC/-																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213373	36213373	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs370754915		P-0076888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	167	335	0	ENST00000222270.7:c.2570C>T	p.Ser857Leu	p.S857L	ENST00000222270	NM_014727.1	857	tCa/tTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151848016	151848016	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0076888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	79	192	0	ENST00000262189.6:c.12743C>G	p.Ser4248Ter	p.S4248*	ENST00000262189	NM_170606.2	4248	tCa/tGa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351374	89351374	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	99	378	0	ENST00000301030.4:c.1576C>G	p.His526Asp	p.H526D	ENST00000301030	NM_001256183.1	526	Cac/Gac																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81968057	81968057	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	80	241	0	ENST00000359376.3:c.2763G>C	p.Glu921Asp	p.E921D	ENST00000359376	NM_002661.3	921	gaG/gaC																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0076931-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	186	405	0	ENST00000346208.3:c.1275dup	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678773	52678773	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076931-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	36	182	0	ENST00000394830.3:c.846G>C	p.Met282Ile	p.M282I	ENST00000394830	NM_018313.4	282	atG/atC																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936067	49936067	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201544530		P-0076944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	16	361	0	ENST00000296474.3:c.1603C>T	p.Arg535Cys	p.R535C	ENST00000296474	NM_002447.2	535	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0076946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			793	39	552	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0076946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	24	266	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0076947-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	13	408	0	ENST00000269305.4:c.379T>A	p.Ser127Thr	p.S127T	ENST00000269305	NM_001126112.2	127	Tcc/Acc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044563	47044563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076947-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	30	516	0	ENST00000329236.7:c.1826C>T	p.Ser609Leu	p.S609L	ENST00000329236	NM_001204466.1	609	tCa/tTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0076950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			26	17	299	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	422242	422242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769792722		P-0076950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			59	20	382	0	ENST00000399788.2:c.3016G>A	p.Ala1006Thr	p.A1006T	ENST00000399788	NM_001042603.1	1006	Gct/Act																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492775	56492776	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0076950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			94	17	480	0	ENST00000407977.2:c.163dup	p.Met55AsnfsTer20	p.M55Nfs*20	ENST00000407977		55	atg/aAtg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043441	180043441	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56310180		P-0076950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	18	437	0	ENST00000261937.6:c.3145G>A	p.Asp1049Asn	p.D1049N	ENST00000261937	NM_182925.4	1049	Gac/Aac																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729762	162729762	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	41	492	0	ENST00000367921.3:c.848C>A	p.Thr283Asn	p.T283N	ENST00000367921	NM_006182.2	283	aCc/aAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829839	72829839	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0076950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	25	456	0	ENST00000268489.5:c.6742A>G	p.Arg2248Gly	p.R2248G	ENST00000268489	NM_006885.3	2248	Agg/Ggg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579592	7579605	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TGTAGATGGGTGAA	TGTAGATGGGTGAA	-			P-0076950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	18	430	0	ENST00000269305.4:c.97-15_97-2del		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0076963-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			452	86	396	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0076963-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			585	102	475	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
MGA	23269	MSKCC	GRCh37	15	42019515	42019515	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0076964-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			497	33	397	0	ENST00000219905.7:c.3568C>T	p.Gln1190Ter	p.Q1190*	ENST00000219905	NM_001164273.1	1190	Cag/Tag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678735	52678735	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0076964-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	63	155	0	ENST00000394830.3:c.884C>G	p.Ser295Ter	p.S295*	ENST00000394830	NM_018313.4	295	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0076964-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			586	158	369	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0076964-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			179	89	260	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576120	88576120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0076964-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			764	123	373	0	ENST00000360948.2:c.1553G>C	p.Arg518Pro	p.R518P	ENST00000360948	NM_001012338.2	518	cGt/cCt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59770833	59770833	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0076964-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			188	54	330	0	ENST00000259008.2:c.2533G>T	p.Val845Leu	p.V845L	ENST00000259008	NM_032043.2	845	Gtg/Ttg																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650316	48650316	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0076964-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			749	219	413	0	ENST00000376670.3:c.286T>A	p.Trp96Arg	p.W96R	ENST00000376670	NM_002049.3	96	Tgg/Agg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136272	2136272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0076964-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			985	75	440	0	ENST00000219476.3:c.4741C>T	p.Leu1581Phe	p.L1581F	ENST00000219476	NM_000548.3	1581	Ctc/Ttc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998992	169998992	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076964-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			258	14	251	0	ENST00000295797.4:c.921G>C	p.Glu307Asp	p.E307D	ENST00000295797	NM_002740.5	307	gaG/gaC																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0076965-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			93	470	357	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0076965-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			242	131	336	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179448	56179457	+	frameshift_variant	Frame_Shift_Del	DEL	TTTCTTCTTG	TTTCTTCTTG	-			P-0076965-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			205	336	370	0	ENST00000399503.3:c.3763_3772del	p.Ser1255IlefsTer11	p.S1255Ifs*11	ENST00000399503	NM_005921.1	1254	tTTTCTTCTTGt/tt																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260146	19260146	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0076965-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			260	116	421	0	ENST00000162023.5:c.147C>G	p.Asn49Lys	p.N49K	ENST00000162023		49	aaC/aaG																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250634	26250634	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768039332		P-0076965-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			442	192	516	0	ENST00000446824.2:c.200C>T	p.Pro67Leu	p.P67L	ENST00000446824	NM_021018.2	67	cCa/cTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077062-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	52	240	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0077062-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	97	402	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112176063	112176064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0077088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	247	336	0	ENST00000257430.4:c.4778dup	p.Pro1594AlafsTer38	p.P1594Afs*38	ENST00000257430	NM_000038.5	1591	gca/gcAa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061249	38061249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	501	417	0	ENST00000250448.2:c.740A>G	p.His247Arg	p.H247R	ENST00000250448	NM_004496.3	247	cAc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7572932	7572933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0077106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	235	346	0	ENST00000269305.4:c.1176dup	p.Asp393ArgfsTer78	p.D393Rfs*78	ENST00000269305	NM_001126112.2	392	-/A																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61197655	61197655	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs1173121367		P-0077106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	104	278	0	ENST00000301761.2:c.36+1G>T		p.X12_splice	ENST00000301761	NM_017841.2	12																																																																																
PDGFRB	5159	MSKCC	GRCh37	5	149514466	149514466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	263	452	0	ENST00000261799.4:c.478C>A	p.Leu160Met	p.L160M	ENST00000261799	NM_002609.3	160	Ctg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			197	199	188	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575671	48575671	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0077151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			191	115	173	0	ENST00000342988.3:c.431C>G	p.Ser144Ter	p.S144*	ENST00000342988	NM_005359.5	144	tCa/tGa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55211151	55211151	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			357	90	246	0	ENST00000275493.2:c.394C>G	p.Leu132Val	p.L132V	ENST00000275493	NM_005228.3	132	Ctg/Gtg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260128	16260128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			590	84	346	0	ENST00000375759.3:c.7393C>T	p.Pro2465Ser	p.P2465S	ENST00000375759	NM_015001.2	2465	Cca/Tca																																																																															
CDC73	79577	MSKCC	GRCh37	1	193107266	193107266	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			328	59	284	0	ENST00000367435.3:c.475G>T	p.Gly159Cys	p.G159C	ENST00000367435	NM_024529.4	159	Ggt/Tgt																																																																															
NUP93	9688	MSKCC	GRCh37	16	56878451	56878451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			417	81	270	0	ENST00000308159.5:c.2390G>A	p.Gly797Glu	p.G797E	ENST00000308159	NM_014669.4	797	gGa/gAa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149452957	149452957	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			311	67	235	0	ENST00000286301.3:c.989G>T	p.Gly330Val	p.G330V	ENST00000286301	NM_005211.3	330	gGc/gTc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913407		P-0077155-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			450	13	436	1	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249017	55249018	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCACGT			P-0077155-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			876	2535	551	0	ENST00000275493.2:c.2316_2321dup	p.His773_Val774dup	p.H773_V774dup	ENST00000275493	NM_005228.3	773	ccc/ccCCACGTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217133	66217133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077155-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			414	57	401	0	ENST00000273854.3:c.2482G>A	p.Asp828Asn	p.D828N	ENST00000273854	NM_004439.5	828	Gat/Aat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0077162-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	16	390	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578400	7578400	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs751477326		P-0077162-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			327	20	476	0	ENST00000269305.4:c.530C>G	p.Pro177Arg	p.P177R	ENST00000269305	NM_001126112.2	177	cCc/cGc																																																																															
ABL1	25	MSKCC	GRCh37	9	133760739	133760739	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370992010		P-0077162-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			242	14	455	0	ENST00000318560.5:c.3062G>A	p.Arg1021Gln	p.R1021Q	ENST00000318560	NM_005157.4	1021	cGg/cAg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	359972	359972	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0077162-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			203	20	378	0	ENST00000262320.3:c.1116+1G>A		p.X372_splice	ENST00000262320	NM_003502.3	372																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0077162-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			227	20	291	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039277	47039277	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0077162-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			144	24	211	0	ENST00000329236.7:c.671-2A>G		p.X224_splice	ENST00000329236	NM_001204466.1	224																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931588		P-0077195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	12	334	0	ENST00000349496.5:c.94G>A	p.Asp32Asn	p.D32N	ENST00000349496	NM_001904.3	32	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7576900	7576901	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0077195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	37	445	0	ENST00000269305.4:c.945_946del	p.Gln317AlafsTer19	p.Q317Afs*19	ENST00000269305	NM_001126112.2	315	tcTCcc/tccc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44514776	44514776	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	9	415	0	ENST00000291552.4:c.471G>T	p.Gln157His	p.Q157H	ENST00000291552	NM_006758.2	157	caG/caT																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0077207-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			350	327	477	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442534	52442534	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753629908		P-0077207-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	305	510	0	ENST00000460680.1:c.211G>A	p.Val71Met	p.V71M	ENST00000460680	NM_004656.3	71	Gtg/Atg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948208	71948209	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs749079348		P-0077207-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			106	334	560	0	ENST00000298229.2:c.2927dup	p.Pro977ThrfsTer7	p.P977Tfs*7	ENST00000298229	NM_001567.3	974	gcc/gCcc																																																																															
KLF5	688	MSKCC	GRCh37	13	73649989	73649989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077207-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	248	489	0	ENST00000377687.4:c.1339C>T	p.His447Tyr	p.H447Y	ENST00000377687	NM_001730.3	447	Cac/Tac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425506	49425521	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTGGGGGAAGGTAA	AGCTGGGGGAAGGTAA	-			P-0077207-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			461	588	707	0	ENST00000301067.7:c.12967_12982del	p.Leu4323ProfsTer56	p.L4323Pfs*56	ENST00000301067	NM_003482.3	4323	TTACCTTCCCCCAGCTcc/cc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572602	64572604	+	missense_variant	Missense_Mutation	ONP	GTC	GTC	ATT			P-0077207-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			97	333	651	0	ENST00000337652.1:c.1267_1269delinsAAT	p.Asp423Asn	p.D423N	ENST00000337652	NM_130803.2	423	GAC/AAT																																																																															
ATM	472	MSKCC	GRCh37	11	108142063	108142063	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077210-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			233	59	429	0	ENST00000278616.4:c.3007C>T	p.Gln1003Ter	p.Q1003*	ENST00000278616	NM_000051.3	1003	Caa/Taa																																																																															
POLE	5426	MSKCC	GRCh37	12	133252691	133252691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077210-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			286	63	427	0	ENST00000320574.5:c.1009G>A	p.Glu337Lys	p.E337K	ENST00000320574	NM_006231.2	337	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0077210-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			207	68	241	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573628	48573628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077210-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			212	62	376	0	ENST00000342988.3:c.212G>T	p.Cys71Phe	p.C71F	ENST00000342988	NM_005359.5	71	tGt/tTt																																																																															
ATM	472	MSKCC	GRCh37	11	108173713	108173714	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CACA			P-0077210-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			229	66	337	0	ENST00000278616.4:c.5454_5457dup	p.Lys1820HisfsTer4	p.K1820Hfs*4	ENST00000278616	NM_000051.3	1818	ggc/ggCACAc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1918675	1918682	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCTCGT	AGCCTCGT	-			P-0077354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	30	243	0	ENST00000382895.3:c.841_848del	p.Leu281PhefsTer2	p.L281Ffs*2	ENST00000382895	NM_133330.2	280	AGCCTCGTa/a																																																																															
AR	367	MSKCC	GRCh37	X	66766105	66766105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	40	490	1	ENST00000374690.3:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000374690	NM_000044.3	373	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0077361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	45	380	0	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																																
FGFR1	2260	MSKCC	GRCh37	8	38277219	38277222	+	frameshift_variant	Frame_Shift_Del	DEL	GGGC	GGGC	-			P-0077361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	60	418	0	ENST00000425967.3:c.1206_1209del	p.Pro403CysfsTer27	p.P403Cfs*27	ENST00000425967	NM_001174067.1	402	tcGCCC/tc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918614	44918614	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	85	323	0	ENST00000377967.4:c.1097A>T	p.Asn366Ile	p.N366I	ENST00000377967	NM_021140.2	366	aAc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0077418-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			181	29	499	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
CIC	23152	MSKCC	GRCh37	19	42791393	42791393	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0077418-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			310	8	542	0	ENST00000575354.2:c.452+1G>A		p.X151_splice	ENST00000575354	NM_015125.3	151																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0077418-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			194	11	259	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713643	30713643	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077418-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	38	487	0	ENST00000359013.4:c.1043T>C	p.Leu348Pro	p.L348P	ENST00000359013	NM_001024847.2	348	cTg/cCg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134287	41134289	+	inframe_deletion	In_Frame_Del	DEL	CGA	CGA	-			P-0077418-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			256	16	462	0	ENST00000379561.5:c.1339_1341del	p.Ser448del	p.S448del	ENST00000379561	NM_002015.3	447	TCG/-																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1325428	1325428	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077428-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	60	319	0	ENST00000381566.1:c.247G>C	p.Gly83Arg	p.G83R	ENST00000381566		83	Ggg/Cgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0077455-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			569	308	322	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RB1	5925	MSKCC	GRCh37	13	48953785	48953785	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0077455-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			162	82	120	0	ENST00000267163.4:c.1388C>G	p.Ser463Ter	p.S463*	ENST00000267163	NM_000321.2	463	tCa/tGa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486130	8486130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077455-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			608	141	374	0	ENST00000356435.5:c.2687C>T	p.Ser896Leu	p.S896L	ENST00000356435		896	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578418	7578418	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077455-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			358	195	399	0	ENST00000269305.4:c.512A>G	p.Glu171Gly	p.E171G	ENST00000269305	NM_001126112.2	171	gAg/gGg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640796	3640796	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781462011		P-0077455-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			673	220	406	0	ENST00000294008.3:c.2843C>T	p.Ala948Val	p.A948V	ENST00000294008	NM_032444.2	948	gCg/gTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863329	57863329	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757234675		P-0077455-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			510	148	323	0	ENST00000228682.2:c.1424C>T	p.Thr475Ile	p.T475I	ENST00000228682	NM_005269.2	475	aCt/aTt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349580	89349580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077455-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			582	142	396	0	ENST00000301030.4:c.3370G>A	p.Glu1124Lys	p.E1124K	ENST00000301030	NM_001256183.1	1124	Gag/Aag																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14020433	14020433	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs772606808		P-0077455-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			630	179	276	0	ENST00000311895.7:c.404G>C	p.Arg135Thr	p.R135T	ENST00000311895	NM_005236.2	135	aGa/aCa																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366861	40366861	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077455-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			774	148	406	0	ENST00000397332.2:c.336G>C	p.Trp112Cys	p.W112C	ENST00000397332	NM_001033082.2	112	tgG/tgC																																																																															
MTOR	2475	MSKCC	GRCh37	1	11168296	11168296	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077455-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	117	305	0	ENST00000361445.4:c.7576G>C	p.Glu2526Gln	p.E2526Q	ENST00000361445	NM_004958.3	2526	Gag/Cag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244106	41244106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077455-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			576	166	336	0	ENST00000357654.3:c.3442G>A	p.Glu1148Lys	p.E1148K	ENST00000357654	NM_007294.3	1148	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432168	49432168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077455-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			553	179	391	0	ENST00000301067.7:c.8971C>T	p.Pro2991Ser	p.P2991S	ENST00000301067	NM_003482.3	2991	Ccc/Tcc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0077475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	87	291	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0077475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	68	221	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0077495-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			350	12	433	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0077495-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			210	96	412	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077495-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			64	181	473	0	ENST00000257430.4:c.4067C>A	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tAa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182548	99182548	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs942333191		P-0077495-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			350	34	464	1	ENST00000074304.5:c.2351G>A	p.Arg784Gln	p.R784Q	ENST00000074304	NM_001134224.1	784	cGg/cAg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29092976	29092976	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0077495-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			103	38	282	0	ENST00000328354.6:c.1009-1G>A		p.X337_splice	ENST00000328354	NM_007194.3	337																																																																																
GNAS	2778	MSKCC	GRCh37	20	57484596	57484596	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913494		P-0077495-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			469	15	479	0	ENST00000371085.3:c.680A>G	p.Gln227Arg	p.Q227R	ENST00000371085	NM_000516.4	227	cAg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs770248150		P-0077495-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			71	112	327	0	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																																																															
ATM	472	MSKCC	GRCh37	11	108098388	108098388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141586345		P-0077495-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			100	51	302	0	ENST00000278616.4:c.37C>T	p.Arg13Cys	p.R13C	ENST00000278616	NM_000051.3	13	Cgt/Tgt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127749	64127749	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077529-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	122	357	0	ENST00000334205.4:c.242A>C	p.His81Pro	p.H81P	ENST00000334205	NM_003942.2	81	cAc/cCc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827318	72827318	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1238779139		P-0077529-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			758	45	473	0	ENST00000268489.5:c.9263A>G	p.Asn3088Ser	p.N3088S	ENST00000268489	NM_006885.3	3088	aAc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934571		P-0077564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	102	273	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578518	7578518	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs28934875		P-0077564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	96	388	0	ENST00000269305.4:c.412G>C	p.Ala138Pro	p.A138P	ENST00000269305	NM_001126112.2	138	Gcc/Ccc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0077564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	100	198	10	ENST00000288602.6:c.1742A>T	p.Asn581Ile	p.N581I	ENST00000288602	NM_004333.4	581	aAt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578522	7578522	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs758781593		P-0077564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	102	370	0	ENST00000269305.4:c.408A>C	p.Gln136His	p.Q136H	ENST00000269305	NM_001126112.2	136	caA/caC																																																																															
STK11	6794	MSKCC	GRCh37	19	1207203	1207204	+	splice_donor_variant	Splice_Site	DEL	GT	GT	-			P-0077564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	118	272	0	ENST00000326873.7:c.290+1_290+2del		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8484233	8484233	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200684369		P-0077564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	28	284	0	ENST00000356435.5:c.3299C>T	p.Thr1100Met	p.T1100M	ENST00000356435		1100	aCg/aTg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342671	87342671	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	103	288	0	ENST00000277120.3:c.956A>T	p.Tyr319Phe	p.Y319F	ENST00000277120		319	tAt/tTt																																																																															
RET	5979	MSKCC	GRCh37	10	43615043	43615043	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	116	421	0	ENST00000355710.3:c.2457C>G	p.Ser819Arg	p.S819R	ENST00000355710	NM_020975.4	819	agC/agG																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1327747	1327747	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1261000812		P-0077564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	44	222	0	ENST00000381566.1:c.134C>T	p.Thr45Ile	p.T45I	ENST00000381566		45	aCa/aTa																																																																															
FANCC	2176	MSKCC	GRCh37	9	98002944	98002944	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs756057377		P-0077564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	68	193	0	ENST00000289081.3:c.332A>G	p.Asn111Ser	p.N111S	ENST00000289081	NM_000136.2	111	aAc/aGc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106547320	106547320	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	142	277	0	ENST00000369096.4:c.557C>G	p.Thr186Ser	p.T186S	ENST00000369096	NM_001198.3	186	aCc/aGc																																																																															
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs137854575		P-0077566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	167	332	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0077566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	42	363	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030325	180030325	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115824945		P-0077566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	205	504	0	ENST00000261937.6:c.3959G>A	p.Arg1320Gln	p.R1320Q	ENST00000261937	NM_182925.4	1320	cGg/cAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120403	70120404	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0077566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	135	435	0	ENST00000245479.2:c.1406dup	p.Met469IlefsTer109	p.M469Ifs*109	ENST00000245479	NM_000346.3	469	atg/aTtg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998898	11998898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	44	222	0	ENST00000353533.5:c.400C>T	p.Arg134Trp	p.R134W	ENST00000353533	NM_003010.3	134	Cgg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140481403	140481403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913357		P-0077566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	96	192	0	ENST00000288602.6:c.1405G>A	p.Gly469Arg	p.G469R	ENST00000288602	NM_004333.4	469	Gga/Aga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120472	70120473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0077566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	134	451	0	ENST00000245479.2:c.1477dup	p.His493ProfsTer85	p.H493Pfs*85	ENST00000245479	NM_000346.3	492	acc/aCcc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139397640	139397640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	151	483	1	ENST00000277541.6:c.5161G>A	p.Val1721Met	p.V1721M	ENST00000277541	NM_017617.3	1721	Gtg/Atg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213900	66213900	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	124	259	0	ENST00000273854.3:c.2530T>C	p.Trp844Arg	p.W844R	ENST00000273854	NM_004439.5	844	Tgg/Cgg																																																																															
MET	4233	MSKCC	GRCh37	7	116435773	116435773	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	202	318	0	ENST00000397752.3:c.3863A>G	p.Asn1288Ser	p.N1288S	ENST00000397752	NM_000245.2	1288	aAc/aGc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430299	181430299	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	17	204	0	ENST00000325404.1:c.151T>G	p.Trp51Gly	p.W51G	ENST00000325404	NM_003106.3	51	Tgg/Ggg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928080	178928097	+	inframe_deletion	In_Frame_Del	DEL	AAGATTTGCTGAACCCTA	AAGATTTGCTGAACCCTA	-			P-0077566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	168	250	0	ENST00000263967.3:c.1358_1375del	p.Glu453_Ile459delinsVal	p.E453_I459delinsV	ENST00000263967	NM_006218.2	453	gAAGATTTGCTGAACCCTAtt/gtt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239881	98239881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	22	325	0	ENST00000331920.6:c.1451G>A	p.Gly484Glu	p.G484E	ENST00000331920	NM_000264.3	484	gGa/gAa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129339	152129339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1315292246		P-0077566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	127	388	0	ENST00000206249.3:c.292C>T	p.Pro98Ser	p.P98S	ENST00000206249	NM_000125.3	98	Ccc/Tcc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169985726	169985727	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCCGCT			P-0077566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	201	269	0	ENST00000295797.4:c.390_395dup	p.Arg131_Trp132insCysArg	p.R131_W132insCR	ENST00000295797	NM_002740.5	130	cgc/cGCCGCTgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0077574-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	109	295	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0077574-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			335	42	207	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971133	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077574-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			403	84	296	0	ENST00000304494.5:c.225del	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	75	ccC/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077574-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			307	78	177	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099376	27099377	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0077574-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			410	66	342	0	ENST00000324856.7:c.3614dup	p.Met1205IlefsTer15	p.M1205Ifs*15	ENST00000324856	NM_006015.4	1205	atg/aTtg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0077578-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	290	299	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561376	9561376	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774715756		P-0077578-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			334	247	308	0	ENST00000353224.5:c.406G>A	p.Asp136Asn	p.D136N	ENST00000353224	NM_177990.2	136	Gat/Aat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821877	72821877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077578-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			330	27	321	0	ENST00000268489.5:c.10298C>T	p.Pro3433Leu	p.P3433L	ENST00000268489	NM_006885.3	3433	cCc/cTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821976	72821976	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077578-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			340	29	325	0	ENST00000268489.5:c.10199A>G	p.Gln3400Arg	p.Q3400R	ENST00000268489	NM_006885.3	3400	cAa/cGa																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66511664	66511664	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs281864782		P-0077578-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			71	205	254	0	ENST00000358598.2:c.124C>T	p.Arg42Ter	p.R42*	ENST00000358598	NM_212471.2	42	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0077579-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	159	244	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0077579-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			105	167	239	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106157	27106157	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077579-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	231	288	0	ENST00000324856.7:c.5769del	p.Glu1924ArgfsTer32	p.E1924Rfs*32	ENST00000324856	NM_006015.4	1923	aCc/ac																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0077580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			373	79	305	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0077580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			631	146	427	0	ENST00000275493.2:c.2303_2311dup	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347299	89347299	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0077580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			488	142	495	0	ENST00000301030.4:c.5651C>G	p.Ser1884Ter	p.S1884*	ENST00000301030	NM_001256183.1	1884	tCa/tGa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393621	139393621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			611	68	535	0	ENST00000277541.6:c.6025G>A	p.Gly2009Ser	p.G2009S	ENST00000277541	NM_017617.3	2009	Ggc/Agc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860065	57860065	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758378363		P-0077580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			514	61	460	0	ENST00000228682.2:c.805G>A	p.Val269Met	p.V269M	ENST00000228682	NM_005269.2	269	Gtg/Atg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117650507	117650508	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGTA			P-0077580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			574	58	396	0	ENST00000368508.3:c.5347_5350dup	p.Tyr1784LeufsTer5	p.Y1784Lfs*5	ENST00000368508	NM_002944.2	1784	tat/tTACTat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0077581-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	40	401	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0077581-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			369	32	317	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437315	52437315	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0077586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	177	279	0	ENST00000460680.1:c.1730-1G>T		p.X577_splice	ENST00000460680	NM_004656.3	577																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0077590-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	47	186	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577497	7577497	+	splice_donor_variant	Splice_Site	SNP	A	A	C	rs876659076		P-0077590-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	55	268	0	ENST00000269305.4:c.782+2T>G		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41306568	41306568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077590-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	39	241	0	ENST00000373198.4:c.1091G>A	p.Arg364Gln	p.R364Q	ENST00000373198	NM_133170.3	364	cGa/cAa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520088	106520088	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1484305297		P-0077590-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	52	203	0	ENST00000359195.3:c.2516G>A	p.Arg839His	p.R839H	ENST00000359195	NM_002649.2	839	cGc/cAc																																																																															
CTR9	9646	MSKCC	GRCh37	11	10786260	10786260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077590-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	29	241	0	ENST00000361367.2:c.1579C>T	p.His527Tyr	p.H527Y	ENST00000361367	NM_014633.3	527	Cat/Tat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0077592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	23	128	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108172408	108172409	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0077592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	21	191	0	ENST00000278616.4:c.5216dup	p.Asn1739LysfsTer10	p.N1739Kfs*10	ENST00000278616	NM_000051.3	1737	-/A																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952152	178952152	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0077592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	30	182	0	ENST00000263967.3:c.3207A>G	p.Ter1069TrpextTer4	p.*1069Wext*4	ENST00000263967	NM_006218.2	1069	tgA/tgG																																																																															
APC	324	MSKCC	GRCh37	5	112155042	112155042	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0077592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	59	227	0	ENST00000257430.4:c.1312+1G>C		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	40	160	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
JUN	3725	MSKCC	GRCh37	1	59248635	59248636	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0077592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	72	340	0	ENST00000371222.2:c.107dup	p.Ser37GlufsTer70	p.S37Efs*70	ENST00000371222	NM_002228.3	36	cag/caAg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0077605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	64	541	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0077605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	33	472	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876659802		P-0077605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	75	466	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857275	9857275	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1426934537		P-0077605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	41	581	0	ENST00000330684.3:c.4126C>T	p.Arg1376Cys	p.R1376C	ENST00000330684	NM_001134407.1	1376	Cgc/Tgc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446903	29446903	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs199737518		P-0077605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	70	490	0	ENST00000544604.2:c.2734C>G	p.Gln912Glu	p.Q912E	ENST00000544604	NM_001206998.1	912	Cag/Gag																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0077606-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	85	553	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223796	2223796	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077606-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	49	584	0	ENST00000326181.6:c.1094T>G	p.Leu365Arg	p.L365R	ENST00000326181	NM_032271.2	365	cTg/cGg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47059156	47059157	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTGTGGTAATTCTTCCCAC			P-0077606-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	25	479	0	ENST00000409792.3:c.7486_7504dup	p.Thr2502SerfsTer8	p.T2502Sfs*8	ENST00000409792	NM_014159.6	2502	act/aGTGGGAAGAATTACCACAAct																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829757	72829757	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077606-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	40	498	0	ENST00000268489.5:c.6824T>C	p.Leu2275Pro	p.L2275P	ENST00000268489	NM_006885.3	2275	cTc/cCc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098655	47098655	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077606-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	65	605	0	ENST00000409792.3:c.6619C>T	p.Gln2207Ter	p.Q2207*	ENST00000409792	NM_014159.6	2207	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0077607-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	44	433	0	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41101199	41101199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368237025		P-0077607-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	39	391	0	ENST00000373198.4:c.1157C>T	p.Pro386Leu	p.P386L	ENST00000373198	NM_133170.3	386	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0077607-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	29	231	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0077610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	55	457	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0077610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	66	493	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0077610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	152	328	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717730	89717730	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121909239		P-0077610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	23	270	0	ENST00000371953.3:c.755A>G	p.Asp252Gly	p.D252G	ENST00000371953	NM_000314.4	252	gAt/gGt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127340	55127340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	51	396	0	ENST00000257290.5:c.128C>T	p.Ser43Leu	p.S43L	ENST00000257290	NM_006206.4	43	tCa/tTa																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748126	41748126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	24	395	0	ENST00000226382.2:c.643G>A	p.Gly215Ser	p.G215S	ENST00000226382	NM_003924.3	215	Ggc/Agc																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5557725	5557725	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	99	331	0	ENST00000397747.3:c.739C>A	p.Leu247Ile	p.L247I	ENST00000397747	NM_025239.3	247	Ctc/Atc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221845	55221845	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs751667358		P-0077610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	245	566	0	ENST00000275493.2:c.889C>T	p.Arg297Cys	p.R297C	ENST00000275493	NM_005228.3	297	Cgt/Tgt																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66526479	66526479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	28	395	0	ENST00000358598.2:c.1035G>C	p.Leu345Phe	p.L345F	ENST00000358598	NM_212471.2	345	ttG/ttC																																																																															
MED12	9968	MSKCC	GRCh37	X	70349996	70349996	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	13	221	0	ENST00000374080.3:c.3979C>G	p.Pro1327Ala	p.P1327A	ENST00000374080		1327	Cca/Gca																																																																															
DDR2	4921	MSKCC	GRCh37	1	162735818	162735818	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	146	416	0	ENST00000367921.3:c.1129del	p.Leu377CysfsTer25	p.L377Cfs*25	ENST00000367921	NM_006182.2	376	gCc/gc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17941335	17941335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	172	385	0	ENST00000458235.1:c.3073G>T	p.Asp1025Tyr	p.D1025Y	ENST00000458235	NM_000215.3	1025	Gac/Tac																																																																															
RAB35	11021	MSKCC	GRCh37	12	120536953	120536953	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	65	361	0	ENST00000229340.5:c.233A>G	p.Tyr78Cys	p.Y78C	ENST00000229340	NM_006861.6	78	tAt/tGt																																																																															
AR	367	MSKCC	GRCh37	X	66931466	66931466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	114	233	0	ENST00000374690.3:c.2108C>A	p.Ser703Tyr	p.S703Y	ENST00000374690	NM_000044.3	703	tCt/tAt																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872531	136872531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	130	384	0	ENST00000241393.3:c.967G>T	p.Gly323Trp	p.G323W	ENST00000241393	NM_003467.2	323	Ggg/Tgg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77054910	77054910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	112	331	0	ENST00000356341.3:c.952G>A	p.Val318Ile	p.V318I	ENST00000356341	NM_002576.4	318	Gtc/Atc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12627218	12627218	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	31	369	0	ENST00000251849.4:c.1498C>A	p.Gln500Lys	p.Q500K	ENST00000251849	NM_002880.3	500	Cag/Aag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618809	37618809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	68	455	0	ENST00000447079.4:c.485G>A	p.Gly162Glu	p.G162E	ENST00000447079	NM_015083.1	162	gGg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577555	7577556	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0077614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	53	376	0	ENST00000269305.4:c.725_726delinsTT	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGC/tTT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0077614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	26	291	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27059183	27059183	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	35	295	0	ENST00000324856.7:c.1820del	p.Ser607TyrfsTer12	p.S607Yfs*12	ENST00000324856	NM_006015.4	607	tCa/ta																																																																															
CDC73	79577	MSKCC	GRCh37	1	193099340	193099340	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	31	307	0	ENST00000367435.3:c.274A>G	p.Lys92Glu	p.K92E	ENST00000367435	NM_024529.4	92	Aaa/Gaa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212365	36212365	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	19	523	0	ENST00000222270.7:c.2116C>T	p.Arg706Ter	p.R706*	ENST00000222270	NM_014727.1	706	Cga/Tga																																																																															
TP63	8626	MSKCC	GRCh37	3	189612035	189612035	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773237715		P-0077615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	33	440	1	ENST00000264731.3:c.1787C>T	p.Ala596Val	p.A596V	ENST00000264731	NM_003722.4	596	gCg/gTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557879	187557879	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	201	398	0	ENST00000441802.2:c.3832G>T	p.Asp1278Tyr	p.D1278Y	ENST00000441802	NM_005245.3	1278	Gac/Tac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0077617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	110	318	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
ATR	545	MSKCC	GRCh37	3	142281221	142281221	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	81	355	0	ENST00000350721.4:c.1023G>C	p.Leu341Phe	p.L341F	ENST00000350721	NM_001184.3	341	ttG/ttC																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250818	153250858	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTTACTTTGCCTGTGACTGCTGACCAAACTTTTAAAGTGT	ACTTACTTTGCCTGTGACTGCTGACCAAACTTTTAAAGTGT	-			P-0077617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	93	221	0	ENST00000281708.4:c.1202_1236+6del		p.X401_splice	ENST00000281708	NM_033632.3	401																																																																																
TP53	7157	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1206165503		P-0077618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	278	529	0	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903773	114903773	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	152	415	0	ENST00000543371.1:c.777G>A	p.Trp259Ter	p.W259*	ENST00000543371	NM_001198531.1	259	tgG/tgA																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981687	70981687	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	235	380	0	ENST00000276594.2:c.409G>C	p.Asp137His	p.D137H	ENST00000276594	NM_024504.3	137	Gac/Cac																																																																															
SOS1	6654	MSKCC	GRCh37	2	39234211	39234211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	127	252	0	ENST00000402219.2:c.2634G>T	p.Met878Ile	p.M878I	ENST00000402219	NM_005633.3	878	atG/atT																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275741	41275741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	174	381	0	ENST00000349496.5:c.1636G>T	p.Asp546Tyr	p.D546Y	ENST00000349496	NM_001904.3	546	Gat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112175419	112175420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTTCAGGAGA			P-0077618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	110	410	0	ENST00000257430.4:c.4129_4138dup	p.Thr1380SerfsTer9	p.T1380Sfs*9	ENST00000257430	NM_000038.5	1376	-/GTTCAGGAGA																																																																															
EP300	2033	MSKCC	GRCh37	22	41572900	41572900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1182102504		P-0077618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	274	487	0	ENST00000263253.7:c.5185G>A	p.Asp1729Asn	p.D1729N	ENST00000263253	NM_001429.3	1729	Gat/Aat																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845343	42845343	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1313725740		P-0077620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	100	467	0	ENST00000398585.3:c.919C>T	p.Gln307Ter	p.Q307*	ENST00000398585	NM_001135099.1	307	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1220469	1220469	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	249	535	0	ENST00000326873.7:c.563del	p.Gly188AlafsTer99	p.G188Afs*99	ENST00000326873	NM_000455.4	188	Ggc/gc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610384	10610384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	282	620	0	ENST00000171111.5:c.326C>T	p.Ala109Val	p.A109V	ENST00000171111	NM_203500.1	109	gCc/gTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858050	9858050	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1462511588		P-0077624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	88	494	0	ENST00000330684.3:c.3351C>G	p.Ile1117Met	p.I1117M	ENST00000330684	NM_001134407.1	1117	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0077625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	210	397	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151871318	151871318	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	123	262	0	ENST00000262189.6:c.9272del	p.Ala3091GlufsTer6	p.A3091Efs*6	ENST00000262189	NM_170606.2	3091	gCa/ga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351917	89351917	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	187	481	0	ENST00000301030.4:c.1033G>C	p.Asp345His	p.D345H	ENST00000301030	NM_001256183.1	345	Gac/Cac																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2029143	2029143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	206	467	0	ENST00000349721.2:c.121C>T	p.His41Tyr	p.H41Y	ENST00000349721	NM_003070.3	41	Cac/Tac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916931	178916943	+	protein_altering_variant	In_Frame_Del	DEL	CAACCGTGAAGAA	CAACCGTGAAGAA	G			P-0077625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	147	332	0	ENST00000263967.3:c.318_330delinsG	p.Asn107_Glu110del	p.N107_E110del	ENST00000263967	NM_006218.2	106	ggCAACCGTGAAGAA/ggG																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913383		P-0077627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	350	457	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0077627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	116	334	0	ENST00000269305.4:c.673-2A>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
CDK8	1024	MSKCC	GRCh37	13	26959366	26959366	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1418353379		P-0077627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	106	277	0	ENST00000381527.3:c.533G>A	p.Arg178Gln	p.R178Q	ENST00000381527	NM_001260.1	178	cGa/cAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540260	187540260	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	157	390	1	ENST00000441802.2:c.7480C>T	p.Gln2494Ter	p.Q2494*	ENST00000441802	NM_005245.3	2494	Cag/Tag																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246021967	246021967	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	90	347	0	ENST00000388985.4:c.907G>T	p.Glu303Ter	p.E303*	ENST00000388985		303	Gag/Tag																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799745	72799745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	159	410	0	ENST00000325599.8:c.1424C>T	p.Ser475Leu	p.S475L	ENST00000325599	NM_018130.2	475	tCa/tTa																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741897	17741897	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	115	331	0	ENST00000250003.3:c.568G>T	p.Gly190Cys	p.G190C	ENST00000250003	NM_002478.4	190	Ggc/Tgc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	417171	417171	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1369709387		P-0077627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	103	348	0	ENST00000399788.2:c.3379G>A	p.Val1127Met	p.V1127M	ENST00000399788	NM_001042603.1	1127	Gtg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984776	72984776	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	138	415	0	ENST00000268489.5:c.2808G>T	p.Gln936His	p.Q936H	ENST00000268489	NM_006885.3	936	caG/caT																																																																															
TAP2	6891	MSKCC	GRCh37	6	32802993	32802993	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	141	411	0	ENST00000374899.4:c.883C>A	p.Leu295Ile	p.L295I	ENST00000374899	NM_018833.2	295	Ctt/Att																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178609	32178609	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	146	407	0	ENST00000375023.3:c.2785G>T	p.Asp929Tyr	p.D929Y	ENST00000375023	NM_004557.3	929	Gat/Tat																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046448	69046448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	132	357	0	ENST00000288368.4:c.3921G>T	p.Trp1307Cys	p.W1307C	ENST00000288368	NM_024870.2	1307	tgG/tgT																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259126	89259126	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	107	363	0	ENST00000336596.2:c.270C>G	p.Asn90Lys	p.N90K	ENST00000336596	NM_005233.5	90	aaC/aaG																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508235	106508235	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	114	439	0	ENST00000359195.3:c.229C>G	p.Arg77Gly	p.R77G	ENST00000359195	NM_002649.2	77	Cga/Gga																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176153788	176153788	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0077627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	91	226	0	ENST00000367669.3:c.448A>T	p.Lys150Ter	p.K150*	ENST00000367669	NM_022457.5	150	Aaa/Taa																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944782	31944782	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	162	258	0	ENST00000340398.3:c.319A>T	p.Thr107Ser	p.T107S	ENST00000340398	NM_001013699.2	107	Act/Tct																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936191	71936191	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	160	446	0	ENST00000298229.2:c.163G>T	p.Ala55Ser	p.A55S	ENST00000298229	NM_001567.3	55	Gcc/Tcc																																																																															
ATRX	546	MSKCC	GRCh37	X	76931734	76931734	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	121	285	0	ENST00000373344.5:c.3796G>C	p.Asp1266His	p.D1266H	ENST00000373344	NM_000489.3	1266	Gat/Cat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089695	27089869	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTCCCCCACCAGGGGGCATGAACCGGAAAACCCAAGAAACTGCTGTCGCCATGCATGTTGCTGCCAACTCTATCCAAAACAGGTAAGGCCTGGGAAGCAGAGAGGGTGTCAGTGCAAGAAAATGTATTATAGACCCACTCAGATTATTGAGATGCTTCTGGACCTAAACCAGGGG	GTCCCCCACCAGGGGGCATGAACCGGAAAACCCAAGAAACTGCTGTCGCCATGCATGTTGCTGCCAACTCTATCCAAAACAGGTAAGGCCTGGGAAGCAGAGAGGGTGTCAGTGCAAGAAAATGTATTATAGACCCACTCAGATTATTGAGATGCTTCTGGACCTAAACCAGGGG	-			P-0077627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	75	504	0	ENST00000324856.7:c.2652_2732+94del		p.X884_splice	ENST00000324856	NM_006015.4	884																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89499511	89499511	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	135	406	0	ENST00000336596.2:c.2681C>A	p.Ala894Glu	p.A894E	ENST00000336596	NM_005233.5	894	gCa/gAa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176673718	176673724	+	frameshift_variant	Frame_Shift_Del	DEL	GACAGAG	GACAGAG	-			P-0077627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	125	318	0	ENST00000439151.2:c.4419_4425del	p.Gln1474MetfsTer11	p.Q1474Mfs*11	ENST00000439151	NM_022455.4	1473	cGACAGAGg/cg																																																																															
POT1	25913	MSKCC	GRCh37	7	124481110	124481110	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	80	306	0	ENST00000357628.3:c.1286A>G	p.Gln429Arg	p.Q429R	ENST00000357628	NM_015450.2	429	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0077640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	274	352	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468382	89468382	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs570346631		P-0077640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	55	334	0	ENST00000336596.2:c.1916G>A	p.Arg639His	p.R639H	ENST00000336596	NM_005233.5	639	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112154963	112154963	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660802		P-0077640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	198	363	0	ENST00000257430.4:c.1234C>T	p.Gln412Ter	p.Q412*	ENST00000257430	NM_000038.5	412	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112174620	112174620	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	257	434	0	ENST00000257430.4:c.3329C>A	p.Ser1110Ter	p.S1110*	ENST00000257430	NM_000038.5	1110	tCa/tAa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44913178	44913178	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			47	42	179	0	ENST00000377967.4:c.853C>T	p.Gln285Ter	p.Q285*	ENST00000377967	NM_021140.2	285	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0077642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	93	418	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244453	46244454	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0077642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	127	607	0	ENST00000334344.6:c.2552dup	p.Gln852ThrfsTer99	p.Q852Tfs*99	ENST00000334344	NM_152641.2	849	-/C																																																																															
TP53	7157	MSKCC	GRCh37	17	7579415	7579415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	113	638	1	ENST00000269305.4:c.272G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tGg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0077644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	92	462	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	111	498	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
SOS1	6654	MSKCC	GRCh37	2	39250272	39250272	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397517147		P-0077644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	94	436	0	ENST00000402219.2:c.1297G>A	p.Glu433Lys	p.E433K	ENST00000402219	NM_005633.3	433	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023708	27023708	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	66	505	1	ENST00000324856.7:c.817del	p.Ala273ProfsTer90	p.A273Pfs*90	ENST00000324856	NM_006015.4	272	Ggg/gg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223967	36223967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	131	680	0	ENST00000222270.7:c.6517C>T	p.Arg2173Trp	p.R2173W	ENST00000222270	NM_014727.1	2173	Cgg/Tgg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119903	70119915	+	frameshift_variant	Frame_Shift_Del	DEL	GCCACCCGGGGGT	GCCACCCGGGGGT	-			P-0077644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	71	587	0	ENST00000245479.2:c.908_920del	p.His303ArgfsTer76	p.H303Rfs*76	ENST00000245479	NM_000346.3	302	gGCCACCCGGGGGTg/gg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609984	81609984	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs765367813		P-0077644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	125	639	0	ENST00000298171.2:c.1582C>A	p.Arg528Ser	p.R528S	ENST00000298171	NM_000369.2	528	Cgc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0077650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	228	457	0	ENST00000269305.4:c.672G>C	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaC																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039290	47039290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	244	481	2	ENST00000329236.7:c.682C>T	p.Arg228Cys	p.R228C	ENST00000329236	NM_001204466.1	228	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106617	27106617	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	202	486	0	ENST00000324856.7:c.6231del	p.Glu2078ArgfsTer57	p.E2078Rfs*57	ENST00000324856	NM_006015.4	2076	taC/ta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	115	260	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114901072	114901073	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0077650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	193	365	0	ENST00000543371.1:c.683dup	p.Gly229ArgfsTer99	p.G229Rfs*99	ENST00000543371	NM_001198531.1	228	aca/aCca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0077653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	278	407	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0077653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	222	458	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0077653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	273	318	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604733	48604734	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAGAAACACCTTGCTGGATTGAAATTCACTTACAC			P-0077653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	52	384	0	ENST00000342988.3:c.1556_1590dup	p.Arg531LysfsTer18	p.R531Kfs*18	ENST00000342988	NM_005359.5	519	aaa/aAAGAAACACCTTGCTGGATTGAAATTCACTTACACaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68982098	68982098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	30	144	0	ENST00000288368.4:c.1472G>A	p.Ser491Asn	p.S491N	ENST00000288368	NM_024870.2	491	aGc/aAc																																																																															
TET1	80312	MSKCC	GRCh37	10	70441157	70441157	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-	rs764225020		P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	67	169	0	ENST00000373644.4:c.4832del	p.Asn1611ThrfsTer13	p.N1611Tfs*13	ENST00000373644	NM_030625.2	1609	gAa/ga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	234	197	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
WT1	7490	MSKCC	GRCh37	11	32456645	32456645	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1410971862		P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	77	267	0	ENST00000332351.3:c.247G>A	p.Val83Ile	p.V83I	ENST00000332351	NM_024426.4	83	Gtc/Atc																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	163	286	1	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	222	186	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	55	243	0	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273958	10273958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	156	320	0	ENST00000330684.3:c.311C>T	p.Thr104Met	p.T104M	ENST00000330684	NM_001134407.1	104	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821875	72821875	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	188	352	2	ENST00000268489.5:c.10300del	p.Leu3434SerfsTer51	p.L3434Sfs*51	ENST00000268489	NM_006885.3	3434	Ctc/tc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347224	89347224	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	159	439	0	ENST00000301030.4:c.5726del	p.Pro1909ArgfsTer54	p.P1909Rfs*54	ENST00000301030	NM_001256183.1	1909	cCg/cg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435927	56435927	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767761157		P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	202	418	0	ENST00000407977.2:c.1210C>T	p.Arg404Cys	p.R404C	ENST00000407977		404	Cgc/Tgc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs758630849		P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	116	299	0	ENST00000305921.3:c.1349del	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119966	70120018	+	frameshift_variant	Frame_Shift_Del	DEL	GCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	GCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	-			P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	106	364	0	ENST00000245479.2:c.970_1022del	p.Thr324AlafsTer236	p.T324Afs*236	ENST00000245479	NM_000346.3	323	aGCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG/a																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223152	5223152	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745426688		P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	139	401	0	ENST00000357368.4:c.2651C>T	p.Pro884Leu	p.P884L	ENST00000357368	NM_002850.3	884	cCg/cTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7132313	7132313	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144029037		P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	163	251	0	ENST00000302850.5:c.2698G>A	p.Val900Ile	p.V900I	ENST00000302850	NM_000208.2	900	Gtc/Atc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	103	352	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670789	134670789	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368276671		P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	154	365	0	ENST00000398015.3:c.700G>A	p.Val234Met	p.V234M	ENST00000398015	NM_004441.4	234	Gtg/Atg																																																																															
BCL6	604	MSKCC	GRCh37	3	187446270	187446270	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	135	300	0	ENST00000232014.4:c.1418del	p.Pro473ArgfsTer117	p.P473Rfs*117	ENST00000232014	NM_001130845.1	473	cCg/cg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	164	317	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
MLH1	4292	MSKCC	GRCh37	3	37035101	37035101	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	146	287	0	ENST00000231790.2:c.67del	p.Glu23LysfsTer13	p.E23Kfs*13	ENST00000231790	NM_000249.3	21	gcG/gc																																																																															
APC	324	MSKCC	GRCh37	5	112177435	112177435	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	116	302	1	ENST00000257430.4:c.6149del	p.Lys2050ArgfsTer23	p.K2050Rfs*23	ENST00000257430	NM_000038.5	2048	ccA/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	143	218	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239063	31239063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	76	517	0	ENST00000376228.5:c.406G>T	p.Gly136Trp	p.G136W	ENST00000376228	NM_002117.5	136	Ggg/Tgg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323232	31323233	+	missense_variant	Missense_Mutation	DNP	CA	CA	TG			P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	176	297	0	ENST00000412585.2:c.756_757inv	p.Glu253Lys	p.E253K	ENST00000412585	NM_005514.6	252	acTGag/acCAag																																																																															
MET	4233	MSKCC	GRCh37	7	116422111	116422111	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	129	187	0	ENST00000397752.3:c.3596del	p.Lys1199SerfsTer49	p.K1199Sfs*49	ENST00000397752	NM_000245.2	1198	Aaa/aa																																																																															
AGO2	27161	MSKCC	GRCh37	8	141570600	141570600	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	161	406	0	ENST00000220592.5:c.528del	p.Val177TrpfsTer37	p.V177Wfs*37	ENST00000220592	NM_012154.3	176	ccC/cc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371987	55371987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	126	365	0	ENST00000297316.4:c.677C>T	p.Pro226Leu	p.P226L	ENST00000297316	NM_022454.3	226	cCg/cTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923086	39923087	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	102	294	0	ENST00000378444.4:c.3621dup	p.Gln1208ThrfsTer8	p.Q1208Tfs*8	ENST00000378444	NM_001123385.1	1207	-/A																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934423	39934423	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1197348343		P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	182	309	0	ENST00000378444.4:c.176G>C	p.Ser59Thr	p.S59T	ENST00000378444	NM_001123385.1	59	aGc/aCc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468331	120468331	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	173	339	0	ENST00000256646.2:c.4108A>G	p.Ser1370Gly	p.S1370G	ENST00000256646	NM_024408.3	1370	Agt/Ggt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231349	46231349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	145	272	0	ENST00000334344.6:c.1189C>A	p.Gln397Lys	p.Q397K	ENST00000334344	NM_152641.2	397	Cag/Aag																																																																															
MGA	23269	MSKCC	GRCh37	15	42005640	42005640	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	169	326	0	ENST00000219905.7:c.3376A>G	p.Arg1126Gly	p.R1126G	ENST00000219905	NM_001164273.1	1126	Agg/Ggg																																																																															
USP8	9101	MSKCC	GRCh37	15	50791145	50791145	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	29	270	0	ENST00000307179.4:c.3221del	p.Asn1074MetfsTer23	p.N1074Mfs*23	ENST00000307179		1073	Aaa/aa																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216790	7216790	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	62	353	0	ENST00000380728.2:c.635-2A>G		p.X212_splice	ENST00000380728		212																																																																																
IDH1	3417	MSKCC	GRCh37	2	209108303	209108303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	160	281	0	ENST00000345146.2:c.546G>A	p.Met182Ile	p.M182I	ENST00000345146	NM_005896.2	182	atG/atA																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46574170	46574170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	159	309	2	ENST00000263734.3:c.185G>A	p.Ser62Asn	p.S62N	ENST00000263734	NM_001430.4	62	aGc/aAc																																																																															
REL	5966	MSKCC	GRCh37	2	61145535	61145535	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	162	244	0	ENST00000295025.8:c.647T>C	p.Ile216Thr	p.I216T	ENST00000295025	NM_002908.2	216	aTa/aCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538242	187538242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369004042		P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	152	233	0	ENST00000441802.2:c.8992G>A	p.Ala2998Thr	p.A2998T	ENST00000441802	NM_005245.3	2998	Gca/Aca																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048803	180048803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	170	342	0	ENST00000261937.6:c.1759C>T	p.His587Tyr	p.H587Y	ENST00000261937	NM_182925.4	587	Cat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0077666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	122	516	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112174784	112174784	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0077666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	106	489	0	ENST00000257430.4:c.3493A>T	p.Lys1165Ter	p.K1165*	ENST00000257430	NM_000038.5	1165	Aaa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	80	466	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911644	114911644	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0077666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	91	409	0	ENST00000543371.1:c.1161+1G>A		p.X387_splice	ENST00000543371	NM_001198531.1	387																																																																																
PRKCI	5584	MSKCC	GRCh37	3	169988298	169988298	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	20	425	0	ENST00000295797.4:c.540G>C	p.Lys180Asn	p.K180N	ENST00000295797	NM_002740.5	180	aaG/aaC																																																																															
MTOR	2475	MSKCC	GRCh37	1	11288757	11288757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	81	514	0	ENST00000361445.4:c.2998G>A	p.Val1000Ile	p.V1000I	ENST00000361445	NM_004958.3	1000	Gtc/Atc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143129663	143129663	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	71	284	0	ENST00000262992.4:c.987C>A	p.Ser329Arg	p.S329R	ENST00000262992	NM_001101669.1	329	agC/agA																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139566542	139566542	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0077666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	53	543	0	ENST00000308874.7:c.799+2T>C		p.X267_splice	ENST00000308874		267																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0077668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	150	372	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045000	47045000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	155	264	0	ENST00000329236.7:c.2092C>T	p.Arg698Trp	p.R698W	ENST00000329236	NM_001204466.1	698	Cgg/Tgg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169985714	169985714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	133	269	0	ENST00000295797.4:c.376C>T	p.Arg126Cys	p.R126C	ENST00000295797	NM_002740.5	126	Cgt/Tgt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636647	176636647	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	162	275	0	ENST00000439151.2:c.1247A>G	p.Lys416Arg	p.K416R	ENST00000439151	NM_022455.4	416	aAa/aGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579525	7579546	+	frameshift_variant	Frame_Shift_Del	DEL	GAACCATTGTTCAATATCGTCC	GAACCATTGTTCAATATCGTCC	-			P-0077668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	148	539	0	ENST00000269305.4:c.141_162del	p.Asp48LeufsTer68	p.D48Lfs*68	ENST00000269305	NM_001126112.2	47	ccGGACGATATTGAACAATGGTTC/cc																																																																															
AURKA	6790	MSKCC	GRCh37	20	54958044	54958044	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	85	307	0	ENST00000312783.6:c.563T>G	p.Leu188Arg	p.L188R	ENST00000312783	NM_198436.1	188	cTt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	127	566	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857895	9857895	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761399460		P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	82	522	0	ENST00000330684.3:c.3506G>A	p.Arg1169Gln	p.R1169Q	ENST00000330684	NM_001134407.1	1169	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057649	27057649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	26	419	1	ENST00000324856.7:c.1357C>T	p.Pro453Ser	p.P453S	ENST00000324856	NM_006015.4	453	Cct/Tct																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196933	138196933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	100	458	0	ENST00000237289.4:c.595C>T	p.Leu199Phe	p.L199F	ENST00000237289	NM_001270507.1	199	Ctt/Ttt																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321382	1321382	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367657347		P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	48	435	0	ENST00000381566.1:c.373G>A	p.Val125Met	p.V125M	ENST00000381566		125	Gtg/Atg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123199738	123199738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	42	260	0	ENST00000218089.9:c.2038G>A	p.Asp680Asn	p.D680N	ENST00000218089	NM_001042749.1	680	Gat/Aat																																																																															
ATRX	546	MSKCC	GRCh37	X	76938911	76938911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	78	459	0	ENST00000373344.5:c.1837G>T	p.Asp613Tyr	p.D613Y	ENST00000373344	NM_000489.3	613	Gat/Tat																																																																															
MGA	23269	MSKCC	GRCh37	15	42000315	42000316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	57	308	0	ENST00000219905.7:c.2337dup	p.Val780CysfsTer3	p.V780Cfs*3	ENST00000219905	NM_001164273.1	778	-/T																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554129	63554129	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	44	570	0	ENST00000307078.5:c.610G>T	p.Gly204Ter	p.G204*	ENST00000307078	NM_004655.3	204	Gga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528597	8528597	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	102	375	0	ENST00000356435.5:c.535C>T	p.Arg179Ter	p.R179*	ENST00000356435		179	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29654616	29654616	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	129	358	0	ENST00000358273.4:c.5368G>T	p.Glu1790Ter	p.E1790*	ENST00000358273	NM_001042492.2	1790	Gaa/Taa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411816	63411816	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	105	581	0	ENST00000330258.3:c.1351G>T	p.Gly451Trp	p.G451W	ENST00000330258	NM_152424.3	451	Ggg/Tgg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502746	149502746	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	59	472	0	ENST00000261799.4:c.2042C>A	p.Thr681Asn	p.T681N	ENST00000261799	NM_002609.3	681	aCt/aAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40727068	40727068	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	118	520	0	ENST00000373198.4:c.3896C>A	p.Thr1299Asn	p.T1299N	ENST00000373198	NM_133170.3	1299	aCt/aAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467562	66467562	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	91	477	0	ENST00000273854.3:c.707T>A	p.Val236Glu	p.V236E	ENST00000273854	NM_004439.5	236	gTg/gAg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106522587	106522587	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	71	269	0	ENST00000359195.3:c.2564G>A	p.Trp855Ter	p.W855*	ENST00000359195	NM_002649.2	855	tGg/tAg																																																																															
RET	5979	MSKCC	GRCh37	10	43600621	43600621	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	25	520	0	ENST00000355710.3:c.847G>T	p.Val283Leu	p.V283L	ENST00000355710	NM_020975.4	283	Gtg/Ttg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163306599	163306599	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	49	308	0	ENST00000271452.3:c.396A>T	p.Glu132Asp	p.E132D	ENST00000271452	NM_145697.2	132	gaA/gaT																																																																															
MPL	4352	MSKCC	GRCh37	1	43804227	43804227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	106	532	0	ENST00000372470.3:c.227C>A	p.Ala76Asp	p.A76D	ENST00000372470	NM_005373.2	76	gCt/gAt																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197319	26197319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	130	701	0	ENST00000356476.2:c.160C>T	p.Arg54Cys	p.R54C	ENST00000356476		54	Cgc/Tgc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082812	16082812	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1438100504		P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	26	351	0	ENST00000281043.3:c.626C>A	p.Pro209Gln	p.P209Q	ENST00000281043	NM_005378.4	209	cCg/cAg																																																																															
APLNR	187	MSKCC	GRCh37	11	57003558	57003558	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	T			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	75	589	0	ENST00000257254.3:c.921C>A	p.Phe307Leu	p.F307L	ENST00000257254		307	ttC/ttA																																																																															
AR	367	MSKCC	GRCh37	X	66765912	66765912	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	72	559	0	ENST00000374690.3:c.924G>T	p.Glu308Asp	p.E308D	ENST00000374690	NM_000044.3	308	gaG/gaT																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290087	15290087	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	63	664	0	ENST00000263388.2:c.3467T>G	p.Leu1156Arg	p.L1156R	ENST00000263388	NM_000435.2	1156	cTc/cGc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229489	98229489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	167	490	0	ENST00000331920.6:c.2469C>A	p.His823Gln	p.H823Q	ENST00000331920	NM_000264.3	823	caC/caA																																																																															
AR	367	MSKCC	GRCh37	X	66766069	66766069	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	75	519	0	ENST00000374690.3:c.1081A>C	p.Ser361Arg	p.S361R	ENST00000374690	NM_000044.3	361	Agt/Cgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735440	40735441	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	29	414	1	ENST00000373198.4:c.3432_3433delinsAA	p.Asn1144_Leu1145delinsLysMet	p.N1144_L1145delinsKM	ENST00000373198	NM_133170.3	1144	aaCCtg/aaAAtg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662618	117662618	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	90	410	0	ENST00000368508.3:c.4847G>T	p.Gly1616Val	p.G1616V	ENST00000368508	NM_002944.2	1616	gGa/gTa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563159	21563159	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs761798256		P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	74	644	0	ENST00000382592.4:c.760G>T	p.Gly254Trp	p.G254W	ENST00000382592	NM_014572.2	254	Ggg/Tgg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665425	138665425	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	57	456	0	ENST00000330315.3:c.140A>T	p.Glu47Val	p.E47V	ENST00000330315	NM_023067.3	47	gAg/gTg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671966	30671966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	91	623	0	ENST00000376406.3:c.4994C>T	p.Pro1665Leu	p.P1665L	ENST00000376406	NM_014641.2	1665	cCc/cTc																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349193	11349193	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1454658380		P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	47	561	0	ENST00000332029.2:c.143del	p.Pro48ArgfsTer37	p.P48Rfs*37	ENST00000332029	NM_003745.1	48	cCg/cg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163317602	163317602	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	65	345	0	ENST00000271452.3:c.998A>T	p.Lys333Ile	p.K333I	ENST00000271452	NM_145697.2	333	aAa/aTa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517592	176517592	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	83	529	0	ENST00000292408.4:c.293G>T	p.Arg98Leu	p.R98L	ENST00000292408	NM_213647.1	98	cGc/cTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29509530	29509530	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	41	348	0	ENST00000358273.4:c.735del	p.Cys245TrpfsTer36	p.C245Wfs*36	ENST00000358273	NM_001042492.2	245	tgT/tg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420263	88420263	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	86	496	0	ENST00000360948.2:c.2423A>G	p.Gln808Arg	p.Q808R	ENST00000360948	NM_001012338.2	808	cAg/cGg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507317	8507317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	75	449	0	ENST00000356435.5:c.1661G>A	p.Gly554Glu	p.G554E	ENST00000356435		554	gGg/gAg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86681116	86681118	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGA	AGA	T			P-0077670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	50	307	0	ENST00000274376.6:c.2759-2_2759delinsT		p.X920_splice	ENST00000274376	NM_002890.2	920																																																																																
JAK3	3718	MSKCC	GRCh37	19	17953881	17953881	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767865565		P-0077675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	105	508	0	ENST00000458235.1:c.521C>T	p.Ala174Val	p.A174V	ENST00000458235	NM_000215.3	174	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0077675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	43	282	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258953	153258953	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0077675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	61	411	0	ENST00000281708.4:c.861+1G>T		p.X287_splice	ENST00000281708	NM_033632.3	287																																																																																
APC	324	MSKCC	GRCh37	5	112176001	112176001	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	217	452	0	ENST00000257430.4:c.4710del	p.Asp1570GlufsTer6	p.D1570Efs*6	ENST00000257430	NM_000038.5	1570	gaT/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578405	7578406	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGC			P-0077675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	94	657	0	ENST00000269305.4:c.522_524dup	p.Arg175dup	p.R175dup	ENST00000269305	NM_001126112.2	175	cgc/cgGCGc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741658	17741658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077678-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	37	453	0	ENST00000250003.3:c.329G>A	p.Arg110His	p.R110H	ENST00000250003	NM_002478.4	110	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0077678-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	115	274	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	438150	438150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077678-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	212	397	0	ENST00000399788.2:c.1819C>T	p.Arg607Cys	p.R607C	ENST00000399788	NM_001042603.1	607	Cgc/Tgc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481677	56481677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077678-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	225	534	0	ENST00000267101.3:c.712C>T	p.Pro238Ser	p.P238S	ENST00000267101	NM_001982.3	238	Cct/Tct																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727490	88727490	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1222179640		P-0077678-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	404	472	1	ENST00000360948.2:c.289G>A	p.Val97Met	p.V97M	ENST00000360948	NM_001012338.2	97	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0077678-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	163	329	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175438	112175439	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0077678-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	180	484	0	ENST00000257430.4:c.4147_4148del	p.Met1383ValfsTer2	p.M1383Vfs*2	ENST00000257430	NM_000038.5	1383	ATg/g																																																																															
FLCN	201163	MSKCC	GRCh37	17	17127363	17127363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077678-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	196	432	0	ENST00000285071.4:c.491G>A	p.Arg164Lys	p.R164K	ENST00000285071	NM_144997.5	164	aGg/aAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827940	40827940	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077678-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			884	190	532	0	ENST00000373198.4:c.2488C>A	p.Leu830Ile	p.L830I	ENST00000373198	NM_133170.3	830	Ctc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0077683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	167	322	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	214	348	0	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247373	153247373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	151	257	0	ENST00000281708.4:c.1429G>A	p.Gly477Ser	p.G477S	ENST00000281708	NM_033632.3	477	Ggt/Agt																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127912014	127912014	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773765410		P-0077683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	143	218	0	ENST00000373547.4:c.856C>T	p.Arg286Trp	p.R286W	ENST00000373547	NM_002721.4	286	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112176030	112176030	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	178	326	0	ENST00000257430.4:c.4741del	p.Ser1581LeufsTer69	p.S1581Lfs*69	ENST00000257430	NM_000038.5	1580	aTt/at																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45394784	45394784	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	118	222	0	ENST00000262160.6:c.565G>T	p.Glu189Ter	p.E189*	ENST00000262160	NM_005901.5	189	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112162918	112162919	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-	rs886039509		P-0077683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	94	192	0	ENST00000257430.4:c.1522_1523del	p.Leu508AspfsTer28	p.L508Dfs*28	ENST00000257430	NM_000038.5	508	TTg/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	69	186	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
JUN	3725	MSKCC	GRCh37	1	59248532	59248533	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTTGAGCAGC			P-0077683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	117	309	0	ENST00000371222.2:c.201_210dup	p.Leu71AlafsTer39	p.L71Afs*39	ENST00000371222	NM_002228.3	70	-/GCTGCTCAAG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0077691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			732	95	558	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858146	9858146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	31	505	0	ENST00000330684.3:c.3255C>A	p.Asn1085Lys	p.N1085K	ENST00000330684	NM_001134407.1	1085	aaC/aaA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0077693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	54	172	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5215339	5215339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs114545401		P-0077693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	110	458	2	ENST00000357368.4:c.4279G>A	p.Ala1427Thr	p.A1427T	ENST00000357368	NM_002850.3	1427	Gcc/Acc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591977	48591977	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs377767354		P-0077693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	149	323	0	ENST00000342988.3:c.1139+1G>A		p.X380_splice	ENST00000342988	NM_005359.5	380																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15273284	15273284	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	113	368	0	ENST00000263388.2:c.5905G>T	p.Asp1969Tyr	p.D1969Y	ENST00000263388	NM_000435.2	1969	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	168	263	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573620	48573621	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0077693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	163	358	0	ENST00000342988.3:c.204_205del	p.Ser69Ter	p.S69*	ENST00000342988	NM_005359.5	68	ccTAgt/ccgt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467921	50467921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	126	482	0	ENST00000331340.3:c.1156C>A	p.Arg386Ser	p.R386S	ENST00000331340	NM_006060.4	386	Cgc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0077695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	50	278	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
SYK	6850	MSKCC	GRCh37	9	93606505	93606505	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1303320502		P-0077695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	40	401	0	ENST00000375746.1:c.325C>T	p.Arg109Trp	p.R109W	ENST00000375746	NM_001174167.1	109	Cgg/Tgg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660831	227660831	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs555150176		P-0077695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	28	451	0	ENST00000305123.5:c.2624G>A	p.Arg875Gln	p.R875Q	ENST00000305123	NM_005544.2	875	cGa/cAa																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112915755	112915755	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs535800148		P-0077695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	25	307	0	ENST00000351677.2:c.1028G>A	p.Arg343Gln	p.R343Q	ENST00000351677	NM_002834.3	343	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0077701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	27	299	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240690	55240690	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs772046081		P-0077701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	46	412	0	ENST00000275493.2:c.1934C>G	p.Ser645Cys	p.S645C	ENST00000275493	NM_005228.3	645	tCc/tGc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170009716	170009716	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	27	167	0	ENST00000295797.4:c.1278A>T	p.Arg426Ser	p.R426S	ENST00000295797	NM_002740.5	426	agA/agT																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347473	89347473	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	33	390	0	ENST00000301030.4:c.5477C>A	p.Pro1826Gln	p.P1826Q	ENST00000301030	NM_001256183.1	1826	cCa/cAa																																																																															
IRF4	3662	MSKCC	GRCh37	6	393271	393271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	42	313	0	ENST00000380956.4:c.119T>A	p.Leu40Gln	p.L40Q	ENST00000380956	NM_001195286.1	40	cTg/cAg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243407	46243407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	24	314	0	ENST00000334344.6:c.1760G>A	p.Ser587Asn	p.S587N	ENST00000334344	NM_152641.2	587	aGt/aAt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591107	67591109	+	missense_variant	Missense_Mutation	ONP	AAC	AAC	TAG			P-0077701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	23	259	0	ENST00000274335.5:c.1700_1702delinsTAG	p.Lys567_Pro568delinsIleAla	p.K567_P568delinsIA	ENST00000274335		567	aAACca/aTAGca																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156732	20156732	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077703-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	74	210	0	ENST00000379607.5:c.25G>C	p.Gly9Arg	p.G9R	ENST00000379607	NM_001412.3	9	Ggt/Cgt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118362641	118362641	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0077703-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	84	282	0	ENST00000534358.1:c.5002C>T	p.Gln1668Ter	p.Q1668*	ENST00000534358	NM_005933.3	1668	Cag/Tag																																																																															
AKT2	208	MSKCC	GRCh37	19	40739782	40739782	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077703-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	64	377	0	ENST00000392038.2:c.1443G>T	p.Glu481Asp	p.E481D	ENST00000392038	NM_001626.4	481	gaG/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0077704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	346	394	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175217	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0077704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	67	277	0	ENST00000257430.4:c.3929dup	p.Ile1311AspfsTer4	p.I1311Dfs*4	ENST00000257430	NM_000038.5	1309	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112162834	112162834	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	52	201	0	ENST00000257430.4:c.1438C>T	p.Gln480Ter	p.Q480*	ENST00000257430	NM_000038.5	480	Caa/Taa																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073938	8073938	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	49	365	0	ENST00000377482.5:c.721C>G	p.Gln241Glu	p.Q241E	ENST00000377482	NM_018948.3	241	Cag/Gag																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619392	1619392	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			790	45	436	0	ENST00000344749.5:c.1249A>C	p.Thr417Pro	p.T417P	ENST00000344749	NM_001136139.2	417	Acg/Ccg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94219115	94219115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	67	242	0	ENST00000323929.3:c.289C>A	p.Gln97Lys	p.Q97K	ENST00000323929	NM_005591.3	97	Cag/Aag																																																																															
B2M	567	MSKCC	GRCh37	15	45007649	45007702	+	inframe_deletion	In_Frame_Del	DEL	TCATCCAGCAGAGAATGGAAAGTCAAATTTCCTGAATTGCTATGTGTCTGGGTT	TCATCCAGCAGAGAATGGAAAGTCAAATTTCCTGAATTGCTATGTGTCTGGGTT	-			P-0077704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	86	349	0	ENST00000558401.1:c.103_156del	p.Ala35_Pro52del	p.A35_P52del	ENST00000558401	NM_004048.2	32	cgTCATCCAGCAGAGAATGGAAAGTCAAATTTCCTGAATTGCTATGTGTCTGGGTTt/cgt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67655358	67655358	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0077704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	46	276	0	ENST00000264010.4:c.1221T>A	p.Tyr407Ter	p.Y407*	ENST00000264010	NM_006565.3	407	taT/taA																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741387	17741387	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1450909304		P-0077704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	44	293	0	ENST00000250003.3:c.58C>G	p.Leu20Val	p.L20V	ENST00000250003	NM_002478.4	20	Ctc/Gtc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78858891	78858891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	68	376	0	ENST00000306801.3:c.1926C>A	p.His642Gln	p.H642Q	ENST00000306801	NM_020761.2	642	caC/caA																																																																															
JAK1	3716	MSKCC	GRCh37	1	65304141	65304146	+	splice_donor_variant,intron_variant	Splice_Site	INS	TTTTTA	TTTTTA	GTTTTTC			P-0077704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	37	225	0	ENST00000342505.4:c.2967+2_2967+7delinsGAAAAAC		p.X989_splice	ENST00000342505	NM_002227.2	989																																																																																
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	10	260	1	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498433	89498433	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369423490		P-0077707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	111	267	0	ENST00000336596.2:c.2405C>T	p.Thr802Met	p.T802M	ENST00000336596	NM_005233.5	802	aCg/aTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245274	46245274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	232	310	0	ENST00000334344.6:c.3368G>T	p.Gly1123Val	p.G1123V	ENST00000334344	NM_152641.2	1123	gGg/gTg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99156125	99156125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	105	270	0	ENST00000074304.5:c.805G>A	p.Glu269Lys	p.E269K	ENST00000074304	NM_001134224.1	269	Gaa/Aaa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032071	10032071	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	71	219	0	ENST00000330684.3:c.752A>T	p.Tyr251Phe	p.Y251F	ENST00000330684	NM_001134407.1	251	tAt/tTt																																																																															
ATM	472	MSKCC	GRCh37	11	108119717	108119717	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0077707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	97	214	0	ENST00000278616.4:c.1123A>T	p.Arg375Ter	p.R375*	ENST00000278616	NM_000051.3	375	Aga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0077711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	99	433	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47035900	47035901	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CTCCCTCAACATC			P-0077711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			725	158	393	0	ENST00000329236.7:c.350_362dup	p.Gly122ProfsTer14	p.G122Pfs*14	ENST00000329236	NM_001204466.1	116	cac/caCTCCCTCAACATCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0077712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	198	471	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303305	15303305	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762164861		P-0077712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	183	401	0	ENST00000263388.2:c.223C>T	p.Arg75Trp	p.R75W	ENST00000263388	NM_000435.2	75	Cgg/Tgg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41268762	41268762	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1245266458		P-0077712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	97	294	0	ENST00000349496.5:c.1000G>A	p.Glu334Lys	p.E334K	ENST00000349496	NM_001904.3	334	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175476	112175477	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0077712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	153	435	0	ENST00000257430.4:c.4187_4188del	p.Phe1396Ter	p.F1396*	ENST00000257430	NM_000038.5	1395	agTTtt/agtt																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64286793	64286793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	161	224	0	ENST00000370651.3:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000370651	NM_003463.4	3	cGa/cAa																																																																															
ATRX	546	MSKCC	GRCh37	X	76949315	76949315	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0077712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			69	197	131	0	ENST00000373344.5:c.482G>A	p.Gly161Glu	p.G161E	ENST00000373344	NM_000489.3	161	gGa/gAa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78617546	78617546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	170	344	0	ENST00000306801.3:c.284C>T	p.Pro95Leu	p.P95L	ENST00000306801	NM_020761.2	95	cCt/cTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575204	48575204	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	108	235	0	ENST00000342988.3:c.398A>C	p.Tyr133Ser	p.Y133S	ENST00000342988	NM_005359.5	133	tAc/tCc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982383	201982384	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0077712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	214	485	0	ENST00000359651.3:c.765dup	p.Glu256ArgfsTer45	p.E256Rfs*45	ENST00000359651		254	-/A																																																																															
ATRX	546	MSKCC	GRCh37	X	76776901	76776901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	99	161	0	ENST00000373344.5:c.7051G>A	p.Glu2351Lys	p.E2351K	ENST00000373344	NM_000489.3	2351	Gag/Aag																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457246	67457246	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1343295267		P-0077716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	59	799	0	ENST00000327367.4:c.220C>T	p.Arg74Trp	p.R74W	ENST00000327367	NM_005902.3	74	Cgg/Tgg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40474327	40474327	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	27	535	0	ENST00000264657.5:c.2074C>T	p.Gln692Ter	p.Q692*	ENST00000264657	NM_139276.2	692	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	36	511	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223813	2223813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	30	479	0	ENST00000326181.6:c.1111C>T	p.Arg371Trp	p.R371W	ENST00000326181	NM_032271.2	371	Cgg/Tgg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500554	149500554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	33	532	0	ENST00000261799.4:c.2483C>T	p.Ala828Val	p.A828V	ENST00000261799	NM_002609.3	828	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	21	244	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972397	32972397	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	34	448	0	ENST00000380152.3:c.9748del	p.Ser3250GlnfsTer25	p.S3250Qfs*25	ENST00000380152		3249	acT/ac																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713577	30713577	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs863223857		P-0077752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	35	514	0	ENST00000359013.4:c.977A>G	p.His326Arg	p.H326R	ENST00000359013	NM_001024847.2	326	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	241	558	16	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0077753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	214	456	9	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0077753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	224	373	4	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																																
MST1R	4486	MSKCC	GRCh37	3	49940342	49940342	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1224367583		P-0077753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			738	119	609	3	ENST00000296474.3:c.701C>T	p.Ala234Val	p.A234V	ENST00000296474	NM_002447.2	234	gCg/gTg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169985727	169985727	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369872734		P-0077753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	54	359	1	ENST00000295797.4:c.389G>A	p.Arg130His	p.R130H	ENST00000295797	NM_002740.5	130	cGc/cAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68845619	68845623	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGA	GCGGA	-			P-0077753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	235	371	11	ENST00000261769.5:c.865_869del	p.Ala289ArgfsTer2	p.A289Rfs*2	ENST00000261769	NM_004360.3	289	GCGGAc/c																																																																															
ATRX	546	MSKCC	GRCh37	X	76849266	76849266	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	196	367	28	ENST00000373344.5:c.6010G>C	p.Asp2004His	p.D2004H	ENST00000373344	NM_000489.3	2004	Gat/Cat																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114221	115114221	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	270	437	5	ENST00000257566.3:c.996del	p.Asn333MetfsTer28	p.N333Mfs*28	ENST00000257566	NM_016569.3	332	gaG/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	264	490	0	ENST00000269305.4:c.398T>G	p.Met133Arg	p.M133R	ENST00000269305	NM_001126112.2	133	aTg/aGg																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	273	441	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604836	48604836	+	stop_lost	Nonstop_Mutation	SNP	G	G	T			P-0077756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	226	399	0	ENST00000342988.3:c.1658G>T	p.Ter553LeuextTer40	p.*553Lext*40	ENST00000342988	NM_005359.5	553	tGa/tTa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70970924	70970924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1277239045		P-0077756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	105	379	0	ENST00000276594.2:c.1337G>A	p.Arg446Gln	p.R446Q	ENST00000276594	NM_024504.3	446	cGg/cAg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120673	94120673	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	59	395	0	ENST00000369303.4:c.378C>A	p.Tyr126Ter	p.Y126*	ENST00000369303	NM_004440.3	126	taC/taA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884460	151884460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	111	387	1	ENST00000262189.6:c.4895C>T	p.Ala1632Val	p.A1632V	ENST00000262189	NM_170606.2	1632	gCc/gTc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900174	101900174	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	143	356	0	ENST00000374994.4:c.608G>T	p.Arg203Ile	p.R203I	ENST00000374994	NM_004612.2	203	aGa/aTa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	406243	406243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	55	337	0	ENST00000399788.2:c.4198C>A	p.His1400Asn	p.H1400N	ENST00000399788	NM_001042603.1	1400	Cat/Aat																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639306	3639306	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777967898		P-0077756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	137	585	0	ENST00000294008.3:c.4333C>T	p.Arg1445Trp	p.R1445W	ENST00000294008	NM_032444.2	1445	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934571		P-0077760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	194	369	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0077760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	70	409	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0077760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	120	251	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs750808726		P-0077760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	81	538	0	ENST00000261937.6:c.1267dup	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733527	85733527	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200837308		P-0077760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	100	421	0	ENST00000370580.1:c.485C>T	p.Thr162Met	p.T162M	ENST00000370580	NM_003921.4	162	aCg/aTg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011160	12011160	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	130	295	0	ENST00000353533.5:c.567C>A	p.Tyr189Ter	p.Y189*	ENST00000353533	NM_003010.3	189	taC/taA																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0077761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	41	245	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0077761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	69	241	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0077761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	11	296	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0077761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	123	350	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0077761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	95	206	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0077761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	10	354	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779343	3779343	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1369215188		P-0077761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	46	349	0	ENST00000262367.5:c.5705C>T	p.Thr1902Met	p.T1902M	ENST00000262367	NM_004380.2	1902	aCg/aTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89813048	89813048	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753036862		P-0077761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	24	280	0	ENST00000389301.3:c.3457G>A	p.Asp1153Asn	p.D1153N	ENST00000389301	NM_000135.2	1153	Gac/Aac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420817	49420817	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1289043998		P-0077761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	37	377	0	ENST00000301067.7:c.14932C>T	p.Arg4978Cys	p.R4978C	ENST00000301067	NM_003482.3	4978	Cgc/Tgc																																																																															
ALK	238	MSKCC	GRCh37	2	30143129	30143129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775940832		P-0077761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	94	384	0	ENST00000389048.3:c.397C>T	p.Arg133Cys	p.R133C	ENST00000389048	NM_004304.4	133	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112173729	112173730	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0077761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	100	290	0	ENST00000257430.4:c.2441_2442dup	p.Asn815LeufsTer6	p.N815Lfs*6	ENST00000257430	NM_000038.5	813	aat/aaTTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057990	27057991	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGCTGC			P-0077761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	23	371	0	ENST00000324856.7:c.1702_1703insTGCCAGC	p.Pro568LeufsTer57	p.P568Lfs*57	ENST00000324856	NM_006015.4	566	-/CAGCTGC																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30648386	30648582	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCTGCTCAGGGGCCTGTGGCCGCTGCACATCGTCCTGTGGACGCGTATCGCCAGCACGATCCCACCGCACGTTCAGAAGTCGGGTGAGTGGTCCCCAGCCCGGGCTCGGCGGGGCGCCGGGGGTCTTCCTGGGGTCCCCGCCTCTCCGCTGCGCTTGACAGTCGGGCCCGGCAACCCGGCCCCCGGGCGGAAACGA	GGCTGCTCAGGGGCCTGTGGCCGCTGCACATCGTCCTGTGGACGCGTATCGCCAGCACGATCCCACCGCACGTTCAGAAGTCGGGTGAGTGGTCCCCAGCCCGGGCTCGGCGGGGCGCCGGGGGTCTTCCTGGGGTCCCCGCCTCTCCGCTGCGCTTGACAGTCGGGCCCGGCAACCCGGCCCCCGGGCGGAAACGA	-			P-0077761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	17	260	0	ENST00000359013.4:c.13_94+115del		p.X5_splice	ENST00000359013	NM_001024847.2	5																																																																																
SETD2	29072	MSKCC	GRCh37	3	47144862	47144862	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	94	233	0	ENST00000409792.3:c.4891T>A	p.Cys1631Ser	p.C1631S	ENST00000409792	NM_014159.6	1631	Tgt/Agt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467782	66467782	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	96	229	0	ENST00000273854.3:c.487G>T	p.Gly163Trp	p.G163W	ENST00000273854	NM_004439.5	163	Ggg/Tgg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509420	106509420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs864622026		P-0077762-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	133	117	0	ENST00000359195.3:c.1414C>T	p.Arg472Cys	p.R472C	ENST00000359195	NM_002649.2	472	Cgt/Tgt																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22160198	22160198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077762-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	138	178	0	ENST00000215832.6:c.433G>A	p.Val145Ile	p.V145I	ENST00000215832	NM_002745.4	145	Gtt/Att																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58700921	58700921	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0077762-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			2038	151	147	0	ENST00000305921.3:c.512C>G	p.Ser171Ter	p.S171*	ENST00000305921	NM_003620.3	171	tCa/tGa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256166	16256166	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077762-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	177	196	0	ENST00000375759.3:c.3431A>G	p.Lys1144Arg	p.K1144R	ENST00000375759	NM_015001.2	1144	aAa/aGa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521430	8521430	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077762-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	113	134	0	ENST00000356435.5:c.808A>C	p.Met270Leu	p.M270L	ENST00000356435		270	Atg/Ctg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0077763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	220	405	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0077763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	240	304	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99192881	99192881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	125	276	0	ENST00000268035.6:c.71C>T	p.Ser24Leu	p.S24L	ENST00000268035	NM_000875.3	24	tCg/tTg																																																																															
SDHA	6389	MSKCC	GRCh37	5	251561	251561	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367621815		P-0077763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			805	173	351	0	ENST00000264932.6:c.1772C>T	p.Ala591Val	p.A591V	ENST00000264932	NM_004168.2	591	gCg/gTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921510	39921510	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0077763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	76	203	0	ENST00000378444.4:c.4310C>G	p.Ser1437Ter	p.S1437*	ENST00000378444	NM_001123385.1	1437	tCa/tGa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043387	180043387	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760757893		P-0077763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	157	410	0	ENST00000261937.6:c.3199G>A	p.Asp1067Asn	p.D1067N	ENST00000261937	NM_182925.4	1067	Gac/Aac																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367917	15367917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	162	362	0	ENST00000263377.2:c.1409C>T	p.Ser470Phe	p.S470F	ENST00000263377	NM_058243.2	470	tCc/tTc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21555605	21555605	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0077763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	146	325	0	ENST00000382592.4:c.2665G>C	p.Gly889Arg	p.G889R	ENST00000382592	NM_014572.2	889	Ggg/Cgg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119812265	119812265	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	150	256	0	ENST00000316626.5:c.17G>A	p.Arg6Lys	p.R6K	ENST00000316626		6	aGa/aAa																																																																															
ATM	472	MSKCC	GRCh37	11	108106483	108106483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	163	292	0	ENST00000278616.4:c.418G>A	p.Asp140Asn	p.D140N	ENST00000278616	NM_000051.3	140	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0077764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	100	320	2	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0077764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	203	318	2	ENST00000257430.4:c.3944C>G	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tGa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880926	134880926	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371083718		P-0077764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	81	348	1	ENST00000398015.3:c.1489C>T	p.Arg497Trp	p.R497W	ENST00000398015	NM_004441.4	497	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0077764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	134	215	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0077769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	107	341	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268144	153268144	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs920052554		P-0077769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	143	358	1	ENST00000281708.4:c.664C>T	p.Arg222Ter	p.R222*	ENST00000281708	NM_033632.3	222	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0077769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	55	426	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175561	112175561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	98	375	0	ENST00000257430.4:c.4271del	p.Pro1424GlnfsTer49	p.P1424Qfs*49	ENST00000257430	NM_000038.5	1424	Cca/ca																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81954830	81954830	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758623675		P-0077769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	33	340	0	ENST00000359376.3:c.2263G>A	p.Val755Ile	p.V755I	ENST00000359376	NM_002661.3	755	Gtc/Atc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061142	38061193	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAA	CGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAA	-			P-0077771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	214	446	0	ENST00000250448.2:c.796_847del	p.Phe266GlyfsTer38	p.F266Gfs*38	ENST00000250448	NM_004496.3	266	TTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGgg/gg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37681048	37681048	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	119	377	0	ENST00000447079.4:c.3219del	p.Thr1074GlnfsTer6	p.T1074Qfs*6	ENST00000447079	NM_015083.1	1073	Ggg/gg																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112771460	112771460	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs778280516		P-0077771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	147	398	0	ENST00000369452.4:c.1633A>G	p.Ile545Val	p.I545V	ENST00000369452	NM_007373.3	545	Atc/Gtc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25497883	25497883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	26	385	0	ENST00000264709.3:c.566C>T	p.Thr189Ile	p.T189I	ENST00000264709	NM_175629.2	189	aCc/aTc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673812	30673812	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777994510		P-0077771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	58	504	0	ENST00000376406.3:c.3148del	p.Gln1050LysfsTer66	p.Q1050Kfs*66	ENST00000376406	NM_014641.2	1050	Caa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0077774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	291	386	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557569	21557569	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750816560		P-0077774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	220	516	1	ENST00000382592.4:c.2276G>A	p.Arg759Gln	p.R759Q	ENST00000382592	NM_014572.2	759	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573545	48573545	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	127	422	0	ENST00000342988.3:c.129G>T	p.Leu43Phe	p.L43F	ENST00000342988	NM_005359.5	43	ttG/ttT																																																																															
SMO	6608	MSKCC	GRCh37	7	128852282	128852282	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1425442829		P-0077774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	177	403	0	ENST00000249373.3:c.2354C>T	p.Ser785Leu	p.S785L	ENST00000249373	NM_005631.4	785	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112137078	112137078	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0077774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	37	290	0	ENST00000257430.4:c.832C>T	p.Gln278Ter	p.Q278*	ENST00000257430	NM_000038.5	278	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991910	72991910	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779741152		P-0077774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	84	506	0	ENST00000268489.5:c.2135G>A	p.Arg712Gln	p.R712Q	ENST00000268489	NM_006885.3	712	cGg/cAg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515166	149515166	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs756405938		P-0077774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	76	418	0	ENST00000261799.4:c.316C>A	p.Arg106Ser	p.R106S	ENST00000261799	NM_002609.3	106	Cgt/Agt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11259438	11259438	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	46	520	0	ENST00000361445.4:c.4130A>C	p.Asp1377Ala	p.D1377A	ENST00000361445	NM_004958.3	1377	gAc/gCc																																																																															
PHF6	84295	MSKCC	GRCh37	X	133511685	133511685	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	68	124	0	ENST00000332070.3:c.38G>C	p.Arg13Thr	p.R13T	ENST00000332070	NM_032458.2	13	aGa/aCa																																																																															
APC	324	MSKCC	GRCh37	5	112175179	112175219	+	frameshift_variant	Frame_Shift_Del	DEL	AGATTCTGCTAATACCCTGCAAATAGCAGAAATAAAAGAAA	AGATTCTGCTAATACCCTGCAAATAGCAGAAATAAAAGAAA	-			P-0077774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	367	419	0	ENST00000257430.4:c.3893_3933del	p.Ser1298TrpfsTer3	p.S1298Wfs*3	ENST00000257430	NM_000038.5	1296	gcAGATTCTGCTAATACCCTGCAAATAGCAGAAATAAAAGAAAag/gcag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302663	15302663	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	350	537	0	ENST00000263388.2:c.695A>G	p.Asn232Ser	p.N232S	ENST00000263388	NM_000435.2	232	aAt/aGt																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4123826	4123826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	72	336	0	ENST00000262948.5:c.47C>T	p.Pro16Leu	p.P16L	ENST00000262948	NM_030662.3	16	cCt/cTt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0077775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	211	347	4	ENST00000346208.3:c.1275dup	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993708	72993708	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62640010		P-0077775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	243	441	8	ENST00000268489.5:c.337G>A	p.Ala113Thr	p.A113T	ENST00000268489	NM_006885.3	113	Gcc/Acc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032458	12032458	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0077775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			16	118	224	10	ENST00000353533.5:c.894T>A	p.Tyr298Ter	p.Y298*	ENST00000353533	NM_003010.3	298	taT/taA																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870909	12870909	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	25	364	0	ENST00000228872.4:c.136G>T	p.Glu46Ter	p.E46*	ENST00000228872	NM_004064.3	46	Gag/Tag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25994306	25994307	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0077775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			20	114	261	5	ENST00000435504.4:c.504+2dup		p.X168_splice	ENST00000435504		168																																																																																
DOT1L	84444	MSKCC	GRCh37	19	2220176	2220176	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	185	320	4	ENST00000398665.3:c.2761A>G	p.Asn921Asp	p.N921D	ENST00000398665	NM_032482.2	921	Aat/Gat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0077778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	230	290	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
ABL1	25	MSKCC	GRCh37	9	133760438	133760438	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	139	409	0	ENST00000318560.5:c.2761G>T	p.Glu921Ter	p.E921*	ENST00000318560	NM_005157.4	921	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916948	178916950	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0077778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	234	287	0	ENST00000263967.3:c.337_339del	p.Leu113del	p.L113del	ENST00000263967	NM_006218.2	112	aTCCtc/atc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81960704	81960704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	126	315	0	ENST00000359376.3:c.2435G>A	p.Gly812Glu	p.G812E	ENST00000359376	NM_002661.3	812	gGa/gAa																																																																															
AR	367	MSKCC	GRCh37	X	66765938	66765938	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1021778539		P-0077778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	140	398	0	ENST00000374690.3:c.950C>T	p.Thr317Ile	p.T317I	ENST00000374690	NM_000044.3	317	aCc/aTc																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020802	26020802	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			998	197	478	0	ENST00000357647.3:c.85A>C	p.Ser29Arg	p.S29R	ENST00000357647	NM_003529.2	29	Agc/Cgc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115735	8115745	+	frameshift_variant	Frame_Shift_Del	DEL	ATCCAGACCAG	ATCCAGACCAG	-			P-0077778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	140	356	0	ENST00000346208.3:c.1082_1092del	p.Ile361LysfsTer6	p.I361Kfs*6	ENST00000346208		361	ATCCAGACCAGa/a																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783664	50783664	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775325438		P-0077778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	125	271	0	ENST00000398568.2:c.55C>T	p.Arg19Trp	p.R19W	ENST00000398568	NM_001042412.1	19	Cgg/Tgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991915	72991915	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	112	384	0	ENST00000268489.5:c.2130C>G	p.His710Gln	p.H710Q	ENST00000268489	NM_006885.3	710	caC/caG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0077780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	10	377	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696434	47696434	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	57	290	0	ENST00000347630.2:c.389A>T	p.Asp130Val	p.D130V	ENST00000347630	NM_001007230.1	130	gAc/gTc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577157	64577157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	93	245	0	ENST00000337652.1:c.425C>T	p.Ser142Phe	p.S142F	ENST00000337652	NM_130803.2	142	tCc/tTc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118980	70118981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0077785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	87	327	0	ENST00000245479.2:c.555dup	p.Gln186AlafsTer66	p.Q186Afs*66	ENST00000245479	NM_000346.3	184	-/G																																																																															
RB1	5925	MSKCC	GRCh37	13	49030367	49030368	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0077787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	37	284	0	ENST00000267163.4:c.1848dup	p.Gly617ArgfsTer36	p.G617Rfs*36	ENST00000267163	NM_000321.2	614	-/A																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993653	72993653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	29	361	0	ENST00000268489.5:c.392G>T	p.Gly131Val	p.G131V	ENST00000268489	NM_006885.3	131	gGg/gTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106155614	106155614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	39	335	0	ENST00000380013.4:c.515G>A	p.Ser172Asn	p.S172N	ENST00000380013	NM_001127208.2	172	aGt/aAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044700	47044700	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0077788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	55	421	0	ENST00000329236.7:c.1867-1G>T		p.X623_splice	ENST00000329236	NM_001204466.1	623																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0077788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	57	237	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MGA	23269	MSKCC	GRCh37	15	42041538	42041539	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0077788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	74	358	0	ENST00000219905.7:c.5736dup	p.Ala1913CysfsTer3	p.A1913Cfs*3	ENST00000219905	NM_001164273.1	1911	-/T																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259263	89259263	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	64	276	0	ENST00000336596.2:c.407G>T	p.Arg136Leu	p.R136L	ENST00000336596	NM_005233.5	136	cGa/cTa																																																																															
KDR	3791	MSKCC	GRCh37	4	55976836	55976836	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs774314168		P-0077788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	37	251	0	ENST00000263923.4:c.1076C>A	p.Pro359His	p.P359H	ENST00000263923	NM_002253.2	359	cCc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42042784	42042784	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	89	321	0	ENST00000219905.7:c.6979C>T	p.Gln2327Ter	p.Q2327*	ENST00000219905	NM_001164273.1	2327	Cag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112171	115112171	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1394460148		P-0077788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	65	316	0	ENST00000257566.3:c.1569C>G	p.Ser523Arg	p.S523R	ENST00000257566	NM_016569.3	523	agC/agG																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943645	17943645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	81	403	0	ENST00000458235.1:c.2444C>A	p.Thr815Lys	p.T815K	ENST00000458235	NM_000215.3	815	aCg/aAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8524957	8524957	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	64	241	0	ENST00000356435.5:c.647G>T	p.Arg216Leu	p.R216L	ENST00000356435		216	cGc/cTc																																																																															
APLNR	187	MSKCC	GRCh37	11	57003460	57003460	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	A			P-0077788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	66	412	0	ENST00000257254.3:c.1019G>T	p.Gly340Val	p.G340V	ENST00000257254		340	gGg/gTg																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281245	49281245	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	24	331	0	ENST00000282018.3:c.292T>C	p.Tyr98His	p.Y98H	ENST00000282018	NM_020377.2	98	Tat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0077790-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	27	199	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604769	48604770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0077790-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	37	335	0	ENST00000342988.3:c.1594dup	p.Ala532GlyfsTer45	p.A532Gfs*45	ENST00000342988	NM_005359.5	531	cgg/cGgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0077793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	102	199	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	86	246	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0077793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	213	281	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981110	201981111	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0077793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	168	276	0	ENST00000359651.3:c.193dup	p.Gln65ProfsTer27	p.Q65Pfs*27	ENST00000359651		63	-/C																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56170877	56170877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	250	249	0	ENST00000399503.3:c.1705G>A	p.Val569Ile	p.V569I	ENST00000399503	NM_005921.1	569	Gtt/Att																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0077793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	192	171	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112174159	112174159	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	96	322	0	ENST00000257430.4:c.2868C>A	p.Tyr956Ter	p.Y956*	ENST00000257430	NM_000038.5	956	taC/taA																																																																															
REST	5978	MSKCC	GRCh37	4	57796342	57796342	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	143	329	0	ENST00000309042.7:c.1318A>T	p.Asn440Tyr	p.N440Y	ENST00000309042	NM_005612.4	440	Aat/Tat																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87359990	87359990	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0077797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	102	256	0	ENST00000277120.3:c.1296+2T>A		p.X432_splice	ENST00000277120		432																																																																																
PDGFRB	5159	MSKCC	GRCh37	5	149504349	149504349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	116	300	0	ENST00000261799.4:c.1853C>A	p.Thr618Lys	p.T618K	ENST00000261799	NM_002609.3	618	aCg/aAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391339	139391364	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGCTGGTGCCAGAGGCCACAGGCA	GGTGCTGGTGCCAGAGGCCACAGGCA	-			P-0077797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	132	360	0	ENST00000277541.6:c.6827_6852del	p.Leu2276ArgfsTer69	p.L2276Rfs*69	ENST00000277541	NM_017617.3	2276	cTGCCTGTGGCCTCTGGCACCAGCACC/c																																																																															
EZH1	2145	MSKCC	GRCh37	17	40874837	40874837	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	117	218	0	ENST00000428826.2:c.463G>C	p.Asp155His	p.D155H	ENST00000428826		155	Gat/Cat																																																																															
CDH1	999	MSKCC	GRCh37	16	68847339	68847339	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	40	304	0	ENST00000261769.5:c.1261G>T	p.Gly421Ter	p.G421*	ENST00000261769	NM_004360.3	421	Gga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879112	151879112	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	377	361	0	ENST00000262189.6:c.5833A>G	p.Arg1945Gly	p.R1945G	ENST00000262189	NM_170606.2	1945	Agg/Ggg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416633	121416633	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	142	241	0	ENST00000257555.6:c.62T>G	p.Leu21Arg	p.L21R	ENST00000257555		21	cTg/cGg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267359	198267359	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs377023736		P-0077800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	94	321	0	ENST00000335508.6:c.1998G>T	p.Lys666Asn	p.K666N	ENST00000335508	NM_012433.2	666	aaG/aaT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0077800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	130	242	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31394027	31394027	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	51	217	0	ENST00000328111.2:c.2314C>T	p.Gln772Ter	p.Q772*	ENST00000328111	NM_006892.3	772	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0077801-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	40	177	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980566	1980566	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs368799821		P-0077801-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	42	282	0	ENST00000382895.3:c.4028C>G	p.Pro1343Arg	p.P1343R	ENST00000382895	NM_133330.2	1343	cCa/cGa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0077802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	45	186	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034417	47034417	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0077802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	33	197	0	ENST00000329236.7:c.272-1G>T		p.X91_splice	ENST00000329236	NM_001204466.1	91																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0077803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	331	349	0	ENST00000269571.5:c.2331_2339dup	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519988		P-0077803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	221	292	0	ENST00000269305.4:c.808T>G	p.Phe270Val	p.F270V	ENST00000269305	NM_001126112.2	270	Ttt/Gtt																																																																															
TERT	7015	MSKCC	GRCh37	5	1296113	1296113	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0077803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	837	327	0				ENST00000310581	NM_198253.2																																																																																	
IDH2	3418	MSKCC	GRCh37	15	90630809	90630809	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0077803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	102	259	0	ENST00000330062.3:c.679-2A>T		p.X227_splice	ENST00000330062	NM_002168.2	227																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0077804-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	79	128	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528611	89528611	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077804-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	84	187	0	ENST00000336596.2:c.2911G>T	p.Ala971Ser	p.A971S	ENST00000336596	NM_005233.5	971	Gct/Tct																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5549481	5549481	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077804-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	140	218	0	ENST00000397747.3:c.508C>A	p.Pro170Thr	p.P170T	ENST00000397747	NM_025239.3	170	Cct/Act																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622202	1622202	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077804-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	91	214	0	ENST00000344749.5:c.673G>T	p.Ala225Ser	p.A225S	ENST00000344749	NM_001136139.2	225	Gcc/Tcc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149514580	149514580	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0077804-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	18	183	0	ENST00000261799.4:c.365-1G>A		p.X122_splice	ENST00000261799	NM_002609.3	122																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106545716	106545716	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs151301577		P-0077804-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	124	215	0	ENST00000359195.3:c.3193A>G	p.Lys1065Glu	p.K1065E	ENST00000359195	NM_002649.2	1065	Aaa/Gaa																																																																															
MGA	23269	MSKCC	GRCh37	15	42005621	42005622	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0077804-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	63	243	0	ENST00000219905.7:c.3357_3358delinsTT	p.Arg1119_Glu1120delinsSerTer	p.R1119_E1120delinsS*	ENST00000219905	NM_001164273.1	1119	agGGag/agTTag																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423505	47423505	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077804-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	79	239	0	ENST00000404338.3:c.1573G>C	p.Gly525Arg	p.G525R	ENST00000404338	NM_004491.4	525	Gga/Cga																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997729	149997729	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077804-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	89	173	0	ENST00000253339.5:c.2738C>G	p.Thr913Ser	p.T913S	ENST00000253339		913	aCt/aGt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638386	176638386	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077804-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	83	191	0	ENST00000439151.2:c.2986C>G	p.Pro996Ala	p.P996A	ENST00000439151	NM_022455.4	996	Cct/Gct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0077823-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			50	22	305	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																															
APC	324	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077823-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	26	358	0	ENST00000257430.4:c.4364del	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249016	55249017	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCCACG			P-0077823-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	171	325	0	ENST00000275493.2:c.2315_2320dup	p.His773_Val774insAlaHis	p.H773_V774insAH	ENST00000275493	NM_005228.3	772	ccc/cCCCACGcc																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112760254	112760254	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077823-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			41	11	216	0	ENST00000369452.4:c.923C>G	p.Ala308Gly	p.A308G	ENST00000369452	NM_007373.3	308	gCa/gGa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448395	56448395	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0077825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	104	399	0	ENST00000407977.2:c.253-1G>T		p.X85_splice	ENST00000407977		85																																																																																
CDKN1B	1027	MSKCC	GRCh37	12	12870953	12870953	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077835-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			65	317	411	0	ENST00000228872.4:c.180G>A	p.Trp60Ter	p.W60*	ENST00000228872	NM_004064.3	60	tgG/tgA																																																																															
TEK	7010	MSKCC	GRCh37	9	27203103	27203103	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077835-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			71	531	380	0	ENST00000380036.4:c.2195T>A	p.Leu732His	p.L732H	ENST00000380036	NM_000459.3	732	cTc/cAc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476264	88476265	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0077835-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1247	240	306	0	ENST00000360948.2:c.1867_1868delinsTT	p.Gly623Leu	p.G623L	ENST00000360948	NM_001012338.2	623	GGa/TTa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858682	9858682	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077835-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			458	341	473	0	ENST00000330684.3:c.2719A>C	p.Met907Leu	p.M907L	ENST00000330684	NM_001134407.1	907	Atg/Ctg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0077836-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			691	370	353	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0077836-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			428	332	237	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0077836-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			478	253	324	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249091	55249091	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519861		P-0077836-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			755	286	320	0	ENST00000275493.2:c.2389T>A	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	Tgc/Agc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925600	114925600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077836-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			427	161	363	0	ENST00000543371.1:c.1678C>T	p.Pro560Ser	p.P560S	ENST00000543371	NM_001198531.1	560	Cca/Tca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100362	27100362	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077836-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			865	52	306	0	ENST00000324856.7:c.4074G>C	p.Gln1358His	p.Q1358H	ENST00000324856	NM_006015.4	1358	caG/caC																																																																															
PRDM1	639	MSKCC	GRCh37	6	106536230	106536230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077836-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			607	62	298	0	ENST00000369096.4:c.197C>A	p.Pro66His	p.P66H	ENST00000369096	NM_001198.3	66	cCc/cAc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515036	103515036	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775996769		P-0077839-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			597	88	307	0	ENST00000355739.4:c.1537G>A	p.Ala513Thr	p.A513T	ENST00000355739	NM_000123.3	513	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057520005		P-0077839-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			322	270	288	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																															
AR	367	MSKCC	GRCh37	X	66863117	66863117	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077839-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			438	187	244	0	ENST00000374690.3:c.1636C>G	p.His546Asp	p.H546D	ENST00000374690	NM_000044.3	546	Cat/Gat																																																																															
TET2	54790	MSKCC	GRCh37	4	106155756	106155757	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-	rs1159746761		P-0077839-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			354	172	295	0	ENST00000380013.4:c.664_665del	p.His222TrpfsTer2	p.H222Wfs*2	ENST00000380013	NM_001127208.2	219	gaACac/gaac																																																																															
RB1	5925	MSKCC	GRCh37	13	49050980	49050980	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0077839-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			242	134	189	0	ENST00000267163.4:c.2663+1G>T		p.X888_splice	ENST00000267163	NM_000321.2	888																																																																																
PIK3CB	5291	MSKCC	GRCh37	3	138433495	138433495	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077839-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			513	65	254	0	ENST00000289153.2:c.1117del	p.Val373TyrfsTer39	p.V373Yfs*39	ENST00000289153	NM_006219.2	373	Gta/ta																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520052	106520052	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077839-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			402	194	187	0	ENST00000359195.3:c.2480C>A	p.Thr827Lys	p.T827K	ENST00000359195	NM_002649.2	827	aCa/aAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427080	49427080	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077839-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			396	286	332	0	ENST00000301067.7:c.11408del	p.Gly3803AlafsTer27	p.G3803Afs*27	ENST00000301067	NM_003482.3	3803	gGc/gc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40874894	40874894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077839-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			512	78	194	0	ENST00000428826.2:c.406G>A	p.Gly136Arg	p.G136R	ENST00000428826		136	Gga/Aga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410306	63410306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077839-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			589	177	360	0	ENST00000330258.3:c.2861G>A	p.Gly954Glu	p.G954E	ENST00000330258	NM_152424.3	954	gGg/gAg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375035	45375035	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077839-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			945	77	253	0	ENST00000262160.6:c.808G>T	p.Glu270Ter	p.E270*	ENST00000262160	NM_005901.5	270	Gaa/Taa																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72163804	72163805	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0077839-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	54	221	0	ENST00000357731.5:c.553_554delinsTT	p.Gly185Leu	p.G185L	ENST00000357731	NM_173808.2	185	GGa/TTa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932321	36932321	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077839-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			524	113	309	0	ENST00000361632.4:c.2148G>C	p.Glu716Asp	p.E716D	ENST00000361632		716	gaG/gaC																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086169	16086169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077839-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			379	138	253	0	ENST00000281043.3:c.1345G>T	p.Ala449Ser	p.A449S	ENST00000281043	NM_005378.4	449	Gca/Tca																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546788	9546788	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077839-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			565	105	331	0	ENST00000353224.5:c.1234C>G	p.Pro412Ala	p.P412A	ENST00000353224	NM_177990.2	412	Ccg/Gcg																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230561625	230561625	+	upstream_gene_variant	5'Flank	SNP	T	T	A			P-0077839-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			507	78	306	0				ENST00000391860	NM_001258311.1																																																																																	
EPHB1	2047	MSKCC	GRCh37	3	134670643	134670643	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077839-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			617	66	310	0	ENST00000398015.3:c.554C>G	p.Ser185Cys	p.S185C	ENST00000398015	NM_004441.4	185	tCt/tGt																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246021961	246021961	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1047652872		P-0077839-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			475	105	220	0	ENST00000388985.4:c.913G>T	p.Val305Phe	p.V305F	ENST00000388985		305	Gtt/Ttt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405803	157405803	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077839-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			375	160	268	0	ENST00000346085.5:c.2045C>G	p.Ser682Cys	p.S682C	ENST00000346085	NM_020732.3	682	tCt/tGt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69030836	69030836	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077839-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	50	216	0	ENST00000288368.4:c.3378C>A	p.Ser1126Arg	p.S1126R	ENST00000288368	NM_024870.2	1126	agC/agA																																																																															
PREX2	80243	MSKCC	GRCh37	8	69030843	69030848	+	inframe_deletion	In_Frame_Del	DEL	TGCAGC	TGCAGC	-			P-0077839-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			261	44	220	0	ENST00000288368.4:c.3386_3391del	p.Cys1129_Ser1130del	p.C1129_S1130del	ENST00000288368	NM_024870.2	1129	TGCAGC/-																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0077844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	67	208	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0077844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	58	174	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069048	5069067	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTTTGATTACAAAAAATG	CTGTTTGATTACAAAAAATG	-			P-0077844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	111	188	0	ENST00000381652.3:c.1353_1372del	p.His451GlnfsTer3	p.H451Qfs*3	ENST00000381652	NM_004972.3	451	caCTGTTTGATTACAAAAAATGag/caag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577047	7577088	+	inframe_deletion	In_Frame_Del	DEL	GTGGTGAGGCTCCCCTTTCTTGCGGAGATTCTCTTCCTCTGT	GTGGTGAGGCTCCCCTTTCTTGCGGAGATTCTCTTCCTCTGT	-			P-0077844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	115	283	0	ENST00000269305.4:c.850_891del	p.Thr284_His297del	p.T284_H297del	ENST00000269305	NM_001126112.2	284	ACAGAGGAAGAGAATCTCCGCAAGAAAGGGGAGCCTCACCAC/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0077848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	58	159	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039886	47039886	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	50	85	0	ENST00000329236.7:c.997del	p.Gln333SerfsTer74	p.Q333Sfs*74	ENST00000329236	NM_001204466.1	332	gCc/gc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800550	32800550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1322324230		P-0077848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	109	340	0	ENST00000374899.4:c.997C>T	p.Arg333Trp	p.R333W	ENST00000374899	NM_018833.2	333	Cgg/Tgg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444299	50444299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	87	292	0	ENST00000331340.3:c.229G>A	p.Glu77Lys	p.E77K	ENST00000331340	NM_006060.4	77	Gaa/Aaa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778780	3778780	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	69	286	0	ENST00000262367.5:c.6268C>G	p.Leu2090Val	p.L2090V	ENST00000262367	NM_004380.2	2090	Ctc/Gtc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864268	117864269	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0077848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	32	224	0	ENST00000297338.2:c.1388_1389del	p.Ile463ArgfsTer2	p.I463Rfs*2	ENST00000297338	NM_006265.2	463	aTA/a																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851694	134851694	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs749032472		P-0077848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	80	209	0	ENST00000398015.3:c.1100G>T	p.Arg367Leu	p.R367L	ENST00000398015	NM_004441.4	367	cGc/cTc																																																																															
KDR	3791	MSKCC	GRCh37	4	55968151	55968151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	83	161	0	ENST00000263923.4:c.2179G>T	p.Val727Leu	p.V727L	ENST00000263923	NM_002253.2	727	Gtg/Ttg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31508757	31508757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	24	152	0	ENST00000344624.3:c.1558G>A	p.Asp520Asn	p.D520N	ENST00000344624		520	Gat/Aat																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244513	41244513	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs876658464		P-0077848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	31	252	0	ENST00000357654.3:c.3035G>C	p.Arg1012Thr	p.R1012T	ENST00000357654	NM_007294.3	1012	aGa/aCa																																																																															
BIRC3	330	MSKCC	GRCh37	11	102206625	102206870	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TATATATAGGACTGGAAGGAAGTTTGTGAGCAGAGTTTGAACATGTTTATGCTTGTTTTCTTTTTTATAAAGATGATTTATTATTAATCCGGAAGAATAGAATGGCACTTTTTCAACATTTGACTTGTGTAATTCCAATCCTGGATAGTCTACTAACTGCCGGAATTATTAATGAACAAGAACATGATGTTATTAAACAGAAGACACAGACGTCTTTACAAGCAAGAGAACTGATTGATACGATTT	TATATATAGGACTGGAAGGAAGTTTGTGAGCAGAGTTTGAACATGTTTATGCTTGTTTTCTTTTTTATAAAGATGATTTATTATTAATCCGGAAGAATAGAATGGCACTTTTTCAACATTTGACTTGTGTAATTCCAATCCTGGATAGTCTACTAACTGCCGGAATTATTAATGAACAAGAACATGATGTTATTAAACAGAAGACACAGACGTCTTTACAAGCAAGAGAACTGATTGATACGATTT	-			P-0077848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	17	107	0	ENST00000263464.3:c.1325-70_1500del		p.X442_splice	ENST00000263464	NM_001165.4	442																																																																																
SMAD2	4087	MSKCC	GRCh37	18	45375002	45375002	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	45	223	0	ENST00000262160.6:c.841G>C	p.Glu281Gln	p.E281Q	ENST00000262160	NM_005901.5	281	Gaa/Caa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99482589	99482590	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0077848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	14	199	0	ENST00000268035.6:c.3457_3457+1delinsTT		p.X1153_splice	ENST00000268035	NM_000875.3	1153																																																																																
ERF	2077	MSKCC	GRCh37	19	42752779	42752779	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	78	277	0	ENST00000222329.4:c.1485A>T	p.Glu495Asp	p.E495D	ENST00000222329	NM_006494.2	495	gaA/gaT																																																																															
INSR	3643	MSKCC	GRCh37	19	7122968	7122968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	29	203	0	ENST00000302850.5:c.3291G>T	p.Gln1097His	p.Q1097H	ENST00000302850	NM_000208.2	1097	caG/caT																																																																															
STK11	6794	MSKCC	GRCh37	19	1220494	1220494	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519858		P-0077867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	120	461	0	ENST00000326873.7:c.587G>T	p.Gly196Val	p.G196V	ENST00000326873	NM_000455.4	196	gGc/gTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100198	27100198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	51	572	0	ENST00000324856.7:c.3994C>T	p.Gln1332Ter	p.Q1332*	ENST00000324856	NM_006015.4	1332	Cag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045189	47045189	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0077867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	73	469	0	ENST00000329236.7:c.2196G>T	p.Glu732Asp	p.E732D	ENST00000329236	NM_001204466.1	732	gaG/gaT																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78931470	78931470	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	32	487	0	ENST00000306801.3:c.3417G>C	p.Met1139Ile	p.M1139I	ENST00000306801	NM_020761.2	1139	atG/atC																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149440465	149440465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	84	418	0	ENST00000286301.3:c.1929C>A	p.His643Gln	p.H643Q	ENST00000286301	NM_005211.3	643	caC/caA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0077867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	28	333	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SDHD	6392	MSKCC	GRCh37	11	111959679	111959679	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	13	182	1	ENST00000375549.3:c.258T>A	p.Asn86Lys	p.N86K	ENST00000375549	NM_003002.3	86	aaT/aaA																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61305162	61305162	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs757988467		P-0077867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	40	562	0	ENST00000341074.5:c.964G>T	p.Gly322Cys	p.G322C	ENST00000341074	NM_002974.2	322	Ggt/Tgt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663396	227663396	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs754992737		P-0077867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	56	399	0	ENST00000305123.5:c.59G>T	p.Arg20Leu	p.R20L	ENST00000305123	NM_005544.2	20	cGc/cTc																																																																															
ATM	472	MSKCC	GRCh37	11	108236080	108236082	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0077867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	46	485	0	ENST00000278616.4:c.9017_9019del	p.Ala3006del	p.A3006del	ENST00000278616	NM_000051.3	3006	GCT/-																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522153	157522153	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	56	510	0	ENST00000346085.5:c.4426del	p.Gln1476ArgfsTer18	p.Q1476Rfs*18	ENST00000346085	NM_020732.3	1475	taC/ta																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549830	187549830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	52	462	0	ENST00000441802.2:c.4411C>A	p.Pro1471Thr	p.P1471T	ENST00000441802	NM_005245.3	1471	Cca/Aca																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243542	41243542	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs976725810		P-0077867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	57	515	0	ENST00000357654.3:c.4006A>T	p.Ser1336Cys	p.S1336C	ENST00000357654	NM_007294.3	1336	Agt/Tgt																																																																															
TET2	54790	MSKCC	GRCh37	4	106155269	106155272	+	frameshift_variant	Frame_Shift_Del	DEL	TCAA	TCAA	AC			P-0077867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	34	475	0	ENST00000380013.4:c.170_173delinsAC	p.Phe57TyrfsTer15	p.F57Yfs*15	ENST00000380013	NM_001127208.2	57	tTCAAa/tACa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519989		P-0077870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	90	369	0	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575192	48575192	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	80	305	0	ENST00000342988.3:c.386A>G	p.Asn129Ser	p.N129S	ENST00000342988	NM_005359.5	129	aAt/aGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	68	359	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440643	56440643	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139557480		P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	58	373	0	ENST00000407977.2:c.575C>T	p.Pro192Leu	p.P192L	ENST00000407977		192	cCg/cTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	158	234	2	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16024505	16024505	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	285	387	1	ENST00000268712.3:c.1713del	p.Arg572GlufsTer18	p.R572Efs*18	ENST00000268712	NM_006311.3	571	ggG/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	565	306	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289863	15289863	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201680145		P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	57	465	0	ENST00000263388.2:c.3691C>T	p.Arg1231Cys	p.R1231C	ENST00000263388	NM_000435.2	1231	Cgt/Tgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	52	117	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	391	428	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395108	139395108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371414501		P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	273	417	0	ENST00000277541.6:c.5830G>A	p.Ala1944Thr	p.A1944T	ENST00000277541	NM_017617.3	1944	Gcc/Acc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256769	19256769	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	243	428	0	ENST00000162023.5:c.944del	p.Pro315GlnfsTer?	p.P315Qfs*?	ENST00000162023		315	cCa/ca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15308383	15308383	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	42	393	1	ENST00000263388.2:c.125del	p.Pro42LeufsTer194	p.P42Lfs*194	ENST00000263388	NM_000435.2	42	cCt/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	343	463	3	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	248	413	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	19	265	1	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at																																																																															
FLT3	2322	MSKCC	GRCh37	13	28578215	28578216	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	248	362	0	ENST00000241453.7:c.2955_2956del	p.Pro986AlafsTer27	p.P986Afs*27	ENST00000241453	NM_004119.2	985	tcTCcg/tccg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982440	25982440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	268	338	0	ENST00000435504.4:c.850C>T	p.Arg284Ter	p.R284*	ENST00000435504		284	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	273	329	0	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	208	431	0	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882050	36882050	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	228	362	4	ENST00000358127.4:c.963del	p.Ala322LeufsTer11	p.A322Lfs*11	ENST00000358127	NM_001280556.1	321	ccC/cc																																																																															
RB1	5925	MSKCC	GRCh37	13	48941741	48941741	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	114	244	0	ENST00000267163.4:c.1049+2T>C		p.X350_splice	ENST00000267163	NM_000321.2	350																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41419897	41419897	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs577588058		P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	329	439	1	ENST00000373198.4:c.424G>A	p.Val142Ile	p.V142I	ENST00000373198	NM_133170.3	142	Gtc/Atc																																																																															
INSR	3643	MSKCC	GRCh37	19	7267797	7267797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	305	387	1	ENST00000302850.5:c.211G>A	p.Glu71Lys	p.E71K	ENST00000302850	NM_000208.2	71	Gaa/Aaa																																																																															
CCND2	894	MSKCC	GRCh37	12	4409101	4409101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1487732338		P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	42	316	0	ENST00000261254.3:c.796C>T	p.Arg266Cys	p.R266C	ENST00000261254	NM_001759.3	266	Cgt/Tgt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459852	149459852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	33	395	0	ENST00000286301.3:c.355G>A	p.Glu119Lys	p.E119K	ENST00000286301	NM_005211.3	119	Gag/Aag																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233239	69233240	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	33	388	0	ENST00000462284.1:c.1111dup	p.Thr371AsnfsTer5	p.T371Nfs*5	ENST00000462284	NM_002392.5	368	-/A																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303059	15303059	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767150916		P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	172	437	0	ENST00000263388.2:c.391G>A	p.Gly131Ser	p.G131S	ENST00000263388	NM_000435.2	131	Ggt/Agt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78858829	78858829	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769317295		P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	281	402	0	ENST00000306801.3:c.1864G>A	p.Ala622Thr	p.A622T	ENST00000306801	NM_020761.2	622	Gcc/Acc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31508787	31508787	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370207689		P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	543	298	1	ENST00000344624.3:c.1528C>T	p.Arg510Cys	p.R510C	ENST00000344624		510	Cgc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108098352	108098352	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs730881359		P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	204	319	0	ENST00000278616.4:c.1A>G	p.Met1?	p.M1?	ENST00000278616	NM_000051.3	1	Atg/Gtg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467916	50467916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1372604802		P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	213	356	0	ENST00000331340.3:c.1151C>T	p.Ser384Leu	p.S384L	ENST00000331340	NM_006060.4	384	tCg/tTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929161	32929162	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	181	326	0	ENST00000380152.3:c.7177dup	p.Met2393AsnfsTer19	p.M2393Nfs*19	ENST00000380152		2391	gaa/gAaa																																																																															
RAB35	11021	MSKCC	GRCh37	12	120536951	120536951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	230	321	0	ENST00000229340.5:c.235C>T	p.Arg79Trp	p.R79W	ENST00000229340	NM_006861.6	79	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223997	36223997	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	312	456	0	ENST00000222270.7:c.6552del	p.Lys2185AsnfsTer18	p.K2185Nfs*18	ENST00000222270	NM_014727.1	2183	Ccc/cc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212589910	212589910	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771486473		P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	235	321	0	ENST00000342788.4:c.632C>T	p.Thr211Met	p.T211M	ENST00000342788	NM_005235.2	211	aCg/aTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983294	15983294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	246	306	1	ENST00000268712.3:c.3485G>A	p.Arg1162Gln	p.R1162Q	ENST00000268712	NM_006311.3	1162	cGg/cAg																																																																															
INSR	3643	MSKCC	GRCh37	19	7267523	7267523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	329	418	2	ENST00000302850.5:c.485G>A	p.Arg162His	p.R162H	ENST00000302850	NM_000208.2	162	cGt/cAt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647490	3647490	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143831403		P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	283	420	0	ENST00000294008.3:c.1573C>T	p.Arg525Cys	p.R525C	ENST00000294008	NM_032444.2	525	Cgc/Tgc																																																																															
EP300	2033	MSKCC	GRCh37	22	41574268	41574268	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	277	384	0	ENST00000263253.7:c.6553C>T	p.Arg2185Ter	p.R2185*	ENST00000263253	NM_001429.3	2185	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542128	187542128	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1298258217		P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	337	447	1	ENST00000441802.2:c.5612A>G	p.Asp1871Gly	p.D1871G	ENST00000441802	NM_005245.3	1871	gAc/gGc																																																																															
USP8	9101	MSKCC	GRCh37	15	50788160	50788160	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	92	279	0	ENST00000307179.4:c.2778del	p.Gln927ArgfsTer30	p.Q927Rfs*30	ENST00000307179		925	cTt/ct																																																																															
ABL1	25	MSKCC	GRCh37	9	133760370	133760370	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	245	378	1	ENST00000318560.5:c.2696del	p.Pro899ArgfsTer43	p.P899Rfs*43	ENST00000318560	NM_005157.4	898	gCc/gc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187192	11187192	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	242	349	1	ENST00000361445.4:c.6226C>T	p.Arg2076Ter	p.R2076*	ENST00000361445	NM_004958.3	2076	Cga/Tga																																																																															
CDK6	1021	MSKCC	GRCh37	7	92300813	92300813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	135	335	0	ENST00000265734.4:c.574C>T	p.Leu192Phe	p.L192F	ENST00000265734	NM_001259.6	192	Ctc/Ttc																																																																															
RB1	5925	MSKCC	GRCh37	13	48947587	48947587	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs181988132		P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	132	282	1	ENST00000267163.4:c.1174G>A	p.Ala392Thr	p.A392T	ENST00000267163	NM_000321.2	392	Gca/Aca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486127	8486127	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201045220		P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	322	411	0	ENST00000356435.5:c.2690C>T	p.Ala897Val	p.A897V	ENST00000356435		897	gCc/gTc																																																																															
ABL1	25	MSKCC	GRCh37	9	133753831	133753831	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	28	321	0	ENST00000318560.5:c.1300A>G	p.Thr434Ala	p.T434A	ENST00000318560	NM_005157.4	434	Acc/Gcc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11270953	11270953	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	27	349	0	ENST00000361445.4:c.3572T>C	p.Phe1191Ser	p.F1191S	ENST00000361445	NM_004958.3	1191	tTc/tCc																																																																															
TET2	54790	MSKCC	GRCh37	4	106197666	106197667	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	291	359	0	ENST00000380013.4:c.6006_6007dup	p.Ter2003TyrfsTer21	p.*2003Yfs*21	ENST00000380013	NM_001127208.2	2000	aga/agATa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28919604	28919604	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	219	379	1	ENST00000282397.4:c.2333T>A	p.Leu778His	p.L778H	ENST00000282397	NM_002019.4	778	cTc/cAc																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544539	86544539	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	36	430	0	ENST00000262426.4:c.364T>G	p.Trp122Gly	p.W122G	ENST00000262426	NM_001451.2	122	Tgg/Ggg																																																																															
SDHA	6389	MSKCC	GRCh37	5	235365	235365	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376597185		P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	274	333	0	ENST00000264932.6:c.1171G>A	p.Ala391Thr	p.A391T	ENST00000264932	NM_004168.2	391	Gct/Act																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52712570	52712571	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	485	336	2	ENST00000394830.3:c.181_182del	p.Lys61GlyfsTer2	p.K61Gfs*2	ENST00000394830	NM_018313.4	61	AAg/g																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662847	227662847	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	253	322	0	ENST00000305123.5:c.608C>G	p.Ala203Gly	p.A203G	ENST00000305123	NM_005544.2	203	gCc/gGc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348172	89348172	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	148	394	0	ENST00000301030.4:c.4778A>G	p.Glu1593Gly	p.E1593G	ENST00000301030	NM_001256183.1	1593	gAg/gGg																																																																															
APC	324	MSKCC	GRCh37	5	112176695	112176698	+	frameshift_variant	Frame_Shift_Del	DEL	GAGA	GAGA	-			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	276	333	3	ENST00000257430.4:c.5407_5410del	p.Arg1803PhefsTer13	p.R1803Ffs*13	ENST00000257430	NM_000038.5	1802	GAGAga/ga																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449591	149449591	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			58	309	399	1	ENST00000286301.3:c.1355A>G	p.Asp452Gly	p.D452G	ENST00000286301	NM_005211.3	452	gAc/gGc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949063	44949063	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	41	150	0	ENST00000377967.4:c.3624T>A	p.Tyr1208Ter	p.Y1208*	ENST00000377967	NM_021140.2	1208	taT/taA																																																																															
ABL1	25	MSKCC	GRCh37	9	133760930	133760930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	40	372	0	ENST00000318560.5:c.3253G>A	p.Glu1085Lys	p.E1085K	ENST00000318560	NM_005157.4	1085	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0077872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	296	511	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201737	66201737	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	108	501	0	ENST00000273854.3:c.2765G>T	p.Arg922Met	p.R922M	ENST00000273854	NM_004439.5	922	aGg/aTg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463247	25463247	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs34843713		P-0077872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	127	541	0	ENST00000264709.3:c.2246G>T	p.Arg749Leu	p.R749L	ENST00000264709	NM_175629.2	749	cGc/cTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299864	15299864	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	133	519	0	ENST00000263388.2:c.1314del	p.Cys440AlafsTer11	p.C440Afs*11	ENST00000263388	NM_000435.2	438	ggG/gg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47108599	47108599	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	82	342	0	ENST00000409792.3:c.6070C>T	p.Arg2024Ter	p.R2024*	ENST00000409792	NM_014159.6	2024	Cga/Tga																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056024	26056024	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	136	422	0	ENST00000343677.2:c.633G>C	p.Lys211Asn	p.K211N	ENST00000343677	NM_005319.3	211	aaG/aaC																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31431769	31431769	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	224	384	0	ENST00000344624.3:c.3059G>T	p.Arg1020Leu	p.R1020L	ENST00000344624		1020	cGa/cTa																																																																															
CASP8	841	MSKCC	GRCh37	2	202139644	202139644	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	135	448	1	ENST00000358485.4:c.805G>T	p.Asp269Tyr	p.D269Y	ENST00000358485	NM_001080125.1	269	Gac/Tac																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120460365	120460365	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	124	432	0	ENST00000256646.2:c.5950del	p.Ala1984GlnfsTer14	p.A1984Qfs*14	ENST00000256646	NM_024408.3	1984	Gca/ca																																																																															
MGA	23269	MSKCC	GRCh37	15	42042169	42042169	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	161	534	0	ENST00000219905.7:c.6364A>T	p.Asn2122Tyr	p.N2122Y	ENST00000219905	NM_001164273.1	2122	Aat/Tat																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205672	128205672	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1172408774		P-0077872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	73	396	0	ENST00000341105.2:c.203C>G	p.Ala68Gly	p.A68G	ENST00000341105	NM_032638.4	68	gCg/gGg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670228	134670228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	109	422	0	ENST00000398015.3:c.139G>T	p.Gly47Cys	p.G47C	ENST00000398015	NM_004441.4	47	Ggc/Tgc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273864	10273864	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	103	397	0	ENST00000330684.3:c.405G>C	p.Met135Ile	p.M135I	ENST00000330684	NM_001134407.1	135	atG/atC																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640056	3640056	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	136	495	0	ENST00000294008.3:c.3583A>T	p.Ile1195Phe	p.I1195F	ENST00000294008	NM_032444.2	1195	Att/Ttt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11168961	11168964	+	frameshift_variant	Frame_Shift_Del	DEL	CATC	CATC	-			P-0077872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	97	395	0	ENST00000344626.4:c.4457_4460del	p.Ile1486SerfsTer24	p.I1486Sfs*24	ENST00000344626	NM_003072.3	1485	ttCATC/tt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033164	69033164	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs754952990		P-0077872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	187	352	0	ENST00000288368.4:c.3604C>A	p.Gln1202Lys	p.Q1202K	ENST00000288368	NM_024870.2	1202	Cag/Aag																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64288417	64288417	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	92	308	0	ENST00000370651.3:c.181G>C	p.Glu61Gln	p.E61Q	ENST00000370651	NM_003463.4	61	Gaa/Caa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0077874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	241	396	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244893	46244893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	65	531	0	ENST00000334344.6:c.2987C>T	p.Ser996Leu	p.S996L	ENST00000334344	NM_152641.2	996	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7590693	7590693	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0077874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	97	382	0	ENST00000269305.4:c.-29+2T>G		p.X10_splice	ENST00000269305	NM_001126112.2	10																																																																																
POLE	5426	MSKCC	GRCh37	12	133219504	133219504	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	37	504	0	ENST00000320574.5:c.4630G>C	p.Glu1544Gln	p.E1544Q	ENST00000320574	NM_006231.2	1544	Gag/Cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0077876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	119	336	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473723	67473723	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223740		P-0077876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	228	384	0	ENST00000327367.4:c.803G>A	p.Arg268His	p.R268H	ENST00000327367	NM_005902.3	268	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0077876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	154	477	0	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0077876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	164	368	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0077876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	190	443	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0077877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	64	326	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519936		P-0077877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	95	409	0	ENST00000263967.3:c.3127A>T	p.Met1043Leu	p.M1043L	ENST00000263967	NM_006218.2	1043	Atg/Ttg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054795	5054795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	61	395	0	ENST00000381652.3:c.847G>A	p.Glu283Lys	p.E283K	ENST00000381652	NM_004972.3	283	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577507	7577507	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	99	262	0	ENST00000269305.4:c.774A>C	p.Glu258Asp	p.E258D	ENST00000269305	NM_001126112.2	258	gaA/gaC																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15942809	15942809	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs774282901		P-0077879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	148	325	0	ENST00000268712.3:c.6893A>G	p.Asn2298Ser	p.N2298S	ENST00000268712	NM_006311.3	2298	aAc/aGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0077879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	110	215	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1222912	1223146	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGAGCTGGGTCGGAAAACTGGACCGCCCTGGTGCCAGCCTGACAGGCGCCACTGCTTCTGGGCGTTTGCAGCTGGTTCCGGAAGAAACATCCTCCGGCTGAAGCACCAGTGCCCATCCCACCGAGCCCAGACACCAAGGACCGGTGGCGCAGCATGACTGTGGTGCCGTACTTGGAGGACCTGCACGGCGCGGACGAGGACGAGGACCTCTTCGACATCGAGGATGACATCATC	AGGAGCTGGGTCGGAAAACTGGACCGCCCTGGTGCCAGCCTGACAGGCGCCACTGCTTCTGGGCGTTTGCAGCTGGTTCCGGAAGAAACATCCTCCGGCTGAAGCACCAGTGCCCATCCCACCGAGCCCAGACACCAAGGACCGGTGGCGCAGCATGACTGTGGTGCCGTACTTGGAGGACCTGCACGGCGCGGACGAGGACGAGGACCTCTTCGACATCGAGGATGACATCATC	-			P-0077879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	66	249	0	ENST00000326873.7:c.921-72_1083del		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																																
BAP1	8314	MSKCC	GRCh37	3	52440346	52440346	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	155	412	0	ENST00000460680.1:c.706G>T	p.Asp236Tyr	p.D236Y	ENST00000460680	NM_004656.3	236	Gac/Tac																																																																															
ARID2	196528	MSKCC	GRCh37	12	46254596	46254598	+	inframe_deletion	In_Frame_Del	DEL	CCA	CCA	-			P-0077879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	96	250	0	ENST00000334344.6:c.4788_4790del	p.Pro1597del	p.P1597del	ENST00000334344	NM_152641.2	1596	CCA/-																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78428487	78428487	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	125	263	0	ENST00000370768.2:c.1312T>G	p.Tyr438Asp	p.Y438D	ENST00000370768	NM_003902.3	438	Tat/Gat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0077885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	138	350	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166139	118166139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766689047		P-0077885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	118	561	0	ENST00000369448.3:c.649G>A	p.Gly217Arg	p.G217R	ENST00000369448	NM_017709.3	217	Ggg/Agg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0077887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	80	290	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PIM1	5292	MSKCC	GRCh37	6	37141805	37141805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	31	340	0	ENST00000373509.5:c.880C>T	p.Leu294Phe	p.L294F	ENST00000373509	NM_002648.3	294	Ctc/Ttc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221738	55221738	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	112	400	0	ENST00000275493.2:c.782A>G	p.Lys261Arg	p.K261R	ENST00000275493	NM_005228.3	261	aAg/aGg																																																																															
KDR	3791	MSKCC	GRCh37	4	55953817	55953817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	70	303	0	ENST00000263923.4:c.3619G>A	p.Val1207Ile	p.V1207I	ENST00000263923	NM_002253.2	1207	Gta/Ata																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040968	47040968	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	89	184	0	ENST00000329236.7:c.1264C>T	p.Gln422Ter	p.Q422*	ENST00000329236	NM_001204466.1	422	Cag/Tag																																																																															
PIM1	5292	MSKCC	GRCh37	6	37140793	37140793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	36	354	0	ENST00000373509.5:c.629C>T	p.Pro210Leu	p.P210L	ENST00000373509	NM_002648.3	210	cCa/cTa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	31	236	0	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0077888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	139	433	3	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	82	281	1	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0077888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	49	288	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343612	343612	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	33	342	0	ENST00000262320.3:c.2062C>G	p.Leu688Val	p.L688V	ENST00000262320	NM_003502.3	688	Ctc/Gtc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968921	15968921	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	28	294	0	ENST00000268712.3:c.4829G>C	p.Arg1610Thr	p.R1610T	ENST00000268712	NM_006311.3	1610	aGa/aCa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056437	26056437	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781281855		P-0077889-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	95	304	0	ENST00000343677.2:c.220G>A	p.Glu74Lys	p.E74K	ENST00000343677	NM_005319.3	74	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0077891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	141	467	0	ENST00000346208.3:c.1220dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923342	9923342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	86	295	0	ENST00000330684.3:c.1945C>A	p.Leu649Met	p.L649M	ENST00000330684	NM_001134407.1	649	Ctg/Atg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99456347	99456347	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	506	375	0	ENST00000268035.6:c.1664A>C	p.Asp555Ala	p.D555A	ENST00000268035	NM_000875.3	555	gAc/gCc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515269	149515269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077891-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			734	138	408	0	ENST00000261799.4:c.213G>T	p.Gln71His	p.Q71H	ENST00000261799	NM_002609.3	71	caG/caT																																																																															
ARAF	369	MSKCC	GRCh37	X	47426801	47426806	+	inframe_deletion	In_Frame_Del	DEL	AGGCTT	AGGCTT	-			P-0077892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	90	130	0	ENST00000377045.4:c.1046_1051del	p.Gln349_Phe351delinsLeu	p.Q349_F351delinsL	ENST00000377045	NM_001654.4	349	cAGGCTTtc/ctc																																																																															
ATR	545	MSKCC	GRCh37	3	142274926	142274926	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	23	231	0	ENST00000350721.4:c.2134G>C	p.Gly712Arg	p.G712R	ENST00000350721	NM_001184.3	712	Ggt/Cgt																																																																															
MAD2L2	10459	MSKCC	GRCh37	1	11736105	11736105	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	63	365	1	ENST00000235310.3:c.425del	p.Pro142GlnfsTer45	p.P142Qfs*45	ENST00000235310		142	cCa/ca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258485	16258485	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780910569		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			738	88	413	0	ENST00000375759.3:c.5750G>A	p.Arg1917His	p.R1917H	ENST00000375759	NM_015001.2	1917	cGc/cAc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193107230	193107230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	93	350	0	ENST00000367435.3:c.439C>T	p.Arg147Cys	p.R147C	ENST00000367435	NM_024529.4	147	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100181	27100182	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA	rs570962335		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	109	473	1	ENST00000324856.7:c.3999_4001dup	p.Gln1334dup	p.Q1334dup	ENST00000324856	NM_006015.4	1334	ccg/ccGCAg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306941	65306941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	71	361	0	ENST00000342505.4:c.2636G>A	p.Arg879His	p.R879H	ENST00000342505	NM_002227.2	879	cGt/cAt																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	68	418	0	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074255	8074255	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	139	504	0	ENST00000377482.5:c.404del	p.Asn135ThrfsTer40	p.N135Tfs*40	ENST00000377482	NM_018948.3	135	aAc/ac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	136	359	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851624	63851624	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs144809623		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			750	104	432	0	ENST00000279873.7:c.2402T>C	p.Val801Ala	p.V801A	ENST00000279873	NM_032199.2	801	gTc/gCc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138858	64138858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	95	302	0	ENST00000334205.4:c.2225G>A	p.Arg742His	p.R742H	ENST00000334205	NM_003942.2	742	cGc/cAc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112891121	112891121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507521		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	154	411	0	ENST00000351677.2:c.455G>A	p.Arg152His	p.R152H	ENST00000351677	NM_002834.3	152	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	85	239	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434555	49434555	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	182	438	0	ENST00000301067.7:c.6998del	p.Pro2333LeufsTer6	p.P2333Lfs*6	ENST00000301067	NM_003482.3	2333	cCt/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	134	440	4	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50481189	50481189	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	110	325	0	ENST00000394963.4:c.575C>T	p.Pro192Leu	p.P192L	ENST00000394963	NM_003076.4	192	cCg/cTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	122	336	1	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41239932	41239933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	41	219	0	ENST00000379561.5:c.417dup	p.Ala140ArgfsTer61	p.A140Rfs*61	ENST00000379561	NM_002015.3	139	-/C																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43766907	43766907	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765177854		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	65	347	1	ENST00000382044.4:c.1144G>A	p.Val382Ile	p.V382I	ENST00000382044	NM_001141980.1	382	Gtt/Att																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99491816	99491816	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs556493537		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	74	337	0	ENST00000268035.6:c.3601G>A	p.Val1201Ile	p.V1201I	ENST00000268035	NM_000875.3	1201	Gtc/Atc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654642	67654642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	130	310	0	ENST00000264010.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000264010	NM_006565.3	377	Cgt/Tgt																																																																															
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			749	65	425	0	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953183	81953183	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762414923		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	106	335	0	ENST00000359376.3:c.2149G>A	p.Val717Ile	p.V717I	ENST00000359376	NM_002661.3	717	Gtc/Atc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	109	377	5	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
BRCA1	672	MSKCC	GRCh37	17	41203123	41203123	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs397509255		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	70	307	0	ENST00000357654.3:c.5289del	p.Leu1764Ter	p.L1764*	ENST00000357654	NM_007294.3	1763	ggG/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	100	525	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271813	15271813	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	131	499	0	ENST00000263388.2:c.6626del	p.Pro2209ArgfsTer37	p.P2209Rfs*37	ENST00000263388	NM_000435.2	2209	cCg/cg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223292	36223292	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749284326		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	160	545	0	ENST00000222270.7:c.5842G>A	p.Val1948Ile	p.V1948I	ENST00000222270	NM_014727.1	1948	Gtc/Atc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223858	36223858	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			722	73	477	1	ENST00000222270.7:c.6413del	p.Pro2138ArgfsTer15	p.P2138Rfs*15	ENST00000222270	NM_014727.1	2136	ctC/ct																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214612	5214612	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139132124		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	81	415	1	ENST00000357368.4:c.4454C>T	p.Ala1485Val	p.A1485V	ENST00000357368	NM_002850.3	1485	gCg/gTg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	102	484	0	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																															
ALK	238	MSKCC	GRCh37	2	30143052	30143052	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	63	420	2	ENST00000389048.3:c.474del	p.Glu160ArgfsTer26	p.E160Rfs*26	ENST00000389048	NM_004304.4	158	ccC/cc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200073	128200073	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374457534		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	110	468	0	ENST00000341105.2:c.1232C>T	p.Ala411Val	p.A411V	ENST00000341105	NM_032638.4	411	gCg/gTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	96	384	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	297	392	14	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
MLH1	4292	MSKCC	GRCh37	3	37035114	37035114	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63749827		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	166	353	0	ENST00000231790.2:c.76C>T	p.Gln26Ter	p.Q26*	ENST00000231790	NM_000249.3	26	Cag/Tag																																																																															
MLH1	4292	MSKCC	GRCh37	3	37090465	37090465	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781310		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	114	324	0	ENST00000231790.2:c.2060G>A	p.Arg687Gln	p.R687Q	ENST00000231790	NM_000249.3	687	cGg/cAg																																																																															
RHOA	387	MSKCC	GRCh37	3	49412922	49412922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	85	370	0	ENST00000418115.1:c.101A>G	p.Tyr34Cys	p.Y34C	ENST00000418115	NM_001664.2	34	tAt/tGt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143181713	143181713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	62	245	0	ENST00000262992.4:c.620C>T	p.Ala207Val	p.A207V	ENST00000262992	NM_001101669.1	207	gCc/gTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	64	357	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541859	187541859	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs560450489		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	122	419	0	ENST00000441802.2:c.5881G>A	p.Gly1961Ser	p.G1961S	ENST00000441802	NM_005245.3	1961	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	133	285	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522414	176522414	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	72	356	0	ENST00000292408.4:c.1603A>G	p.Asn535Asp	p.N535D	ENST00000292408	NM_213647.1	535	Aac/Gac																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004721	150004721	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1034620976		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	149	416	0	ENST00000253339.5:c.1504C>T	p.Arg502Cys	p.R502C	ENST00000253339		502	Cgt/Tgt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31322412	31322412	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	68	301	0	ENST00000412585.2:c.1043C>T	p.Ala348Val	p.A348V	ENST00000412585	NM_005514.6	348	gCg/gTg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324139	31324139	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs151341241		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	58	199	0	ENST00000412585.2:c.424T>C	p.Tyr142His	p.Y142H	ENST00000412585	NM_005514.6	142	Tac/Cac																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	64	416	3	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70967582	70967582	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	123	318	0	ENST00000276594.2:c.1441C>T	p.Arg481Ter	p.R481*	ENST00000276594	NM_024504.3	481	Cga/Tga																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2056699	2056699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	82	346	1	ENST00000349721.2:c.1201C>T	p.Arg401Cys	p.R401C	ENST00000349721	NM_003070.3	401	Cgc/Tgc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39937163	39937164	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	122	335	0	ENST00000378444.4:c.19dup	p.Leu7ProfsTer29	p.L7Pfs*29	ENST00000378444	NM_001123385.1	7	ctg/cCtg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465375	120465375	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	69	459	0	ENST00000256646.2:c.4886A>G	p.Asn1629Ser	p.N1629S	ENST00000256646	NM_024408.3	1629	aAc/aGc																																																																															
PARP1	142	MSKCC	GRCh37	1	226573357	226573357	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs773860428		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	74	402	0	ENST00000366794.5:c.859A>G	p.Met287Val	p.M287V	ENST00000366794	NM_001618.3	287	Atg/Gtg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27022910	27022911	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	74	283	0	ENST00000324856.7:c.21dup	p.Ala8ArgfsTer103	p.A8Rfs*103	ENST00000324856	NM_006015.4	6	gcc/gCcc																																																																															
MPL	4352	MSKCC	GRCh37	1	43806127	43806127	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	123	382	0	ENST00000372470.3:c.923A>G	p.His308Arg	p.H308R	ENST00000372470	NM_005373.2	308	cAt/cGt																																																																															
SUFU	51684	MSKCC	GRCh37	10	104309821	104309821	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs34406289		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	138	317	0	ENST00000369902.3:c.412G>T	p.Ala138Ser	p.A138S	ENST00000369902	NM_016169.3	138	Gca/Tca																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426718	121426718	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			750	144	428	0	ENST00000257555.6:c.409A>G	p.Thr137Ala	p.T137A	ENST00000257555		137	Act/Gct																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569745	95569745	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	132	388	0	ENST00000343455.3:c.3988T>C	p.Tyr1330His	p.Y1330H	ENST00000343455	NM_177438.2	1330	Tat/Cat																																																																															
DICER1	23405	MSKCC	GRCh37	14	95574767	95574767	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	56	329	0	ENST00000343455.3:c.2330del	p.Leu777Ter	p.L777*	ENST00000343455	NM_177438.2	777	tTa/ta																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576130	88576130	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	105	379	0	ENST00000360948.2:c.1543del	p.Gln515SerfsTer26	p.Q515Sfs*26	ENST00000360948	NM_001012338.2	515	Cag/ag																																																																															
BLM	641	MSKCC	GRCh37	15	91304354	91304354	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs765187809		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	90	454	0	ENST00000355112.3:c.1751A>G	p.Tyr584Cys	p.Y584C	ENST00000355112	NM_000057.2	584	tAt/tGt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223822	2223822	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1340989977		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	59	420	0	ENST00000326181.6:c.1120A>G	p.Met374Val	p.M374V	ENST00000326181	NM_032271.2	374	Atg/Gtg																																																																															
CDH1	999	MSKCC	GRCh37	16	68847285	68847286	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	76	329	0	ENST00000261769.5:c.1212dup	p.Asn405GlnfsTer14	p.N405Qfs*14	ENST00000261769	NM_004360.3	403	gcc/gCcc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829740	72829740	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	133	338	0	ENST00000268489.5:c.6841C>A	p.Leu2281Ile	p.L2281I	ENST00000268489	NM_006885.3	2281	Ctt/Att																																																																															
FANCA	2175	MSKCC	GRCh37	16	89857918	89857918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	97	365	1	ENST00000389301.3:c.1252G>A	p.Ala418Thr	p.A418T	ENST00000389301	NM_000135.2	418	Gca/Aca																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923343	9923343	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	123	335	0	ENST00000330684.3:c.1944T>A	p.Asn648Lys	p.N648K	ENST00000330684	NM_001134407.1	648	aaT/aaA																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934842	9934842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	111	336	0	ENST00000330684.3:c.1448G>T	p.Gly483Val	p.G483V	ENST00000330684	NM_001134407.1	483	gGg/gTg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760685	59760685	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	63	326	0	ENST00000259008.2:c.3722del	p.Asn1241IlefsTer13	p.N1241Ifs*13	ENST00000259008	NM_032043.2	1241	aAt/at																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554392	63554392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	146	420	0	ENST00000307078.5:c.347G>A	p.Gly116Glu	p.G116E	ENST00000307078	NM_004655.3	116	gGa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579905	7579905	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	124	428	0	ENST00000269305.4:c.8A>C	p.Glu3Ala	p.E3A	ENST00000269305	NM_001126112.2	3	gAg/gCg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56415071	56415071	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	76	273	0	ENST00000348428.3:c.2472A>T	p.Lys824Asn	p.K824N	ENST00000348428	NM_006785.3	824	aaA/aaT																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265579	10265579	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	86	377	0	ENST00000340748.4:c.1596+2T>C		p.X532_splice	ENST00000340748		532																																																																																
PPP2R1A	5518	MSKCC	GRCh37	19	52724316	52724316	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			725	89	420	0	ENST00000322088.6:c.1448T>C	p.Ile483Thr	p.I483T	ENST00000322088	NM_014225.5	483	aTc/aCc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225365156	225365156	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	115	369	0	ENST00000264414.4:c.1534T>C	p.Tyr512His	p.Y512H	ENST00000264414	NM_003590.4	512	Tat/Cat																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25994316	25994316	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	95	312	0	ENST00000435504.4:c.497T>C	p.Leu166Pro	p.L166P	ENST00000435504		166	cTa/cCa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99162466	99162467	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	58	367	0	ENST00000074304.5:c.989dup	p.Leu331ValfsTer41	p.L331Vfs*41	ENST00000074304	NM_001134224.1	328	-/A																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790069	40790070	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	122	410	0	ENST00000373198.4:c.2661_2662insGC	p.Ile888AlafsTer14	p.I888Afs*14	ENST00000373198	NM_133170.3	887	-/GC																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206775	36206775	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	104	442	0	ENST00000300305.3:c.737del	p.Thr246SerfsTer8	p.T246Sfs*8	ENST00000300305		246	aCg/ag																																																																															
TP63	8626	MSKCC	GRCh37	3	189590757	189590757	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	142	393	0	ENST00000264731.3:c.1322A>C	p.Gln441Pro	p.Q441P	ENST00000264731	NM_003722.4	441	cAg/cCg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37061826	37061826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	203	395	0	ENST00000231790.2:c.910G>T	p.Asp304Tyr	p.D304Y	ENST00000231790	NM_000249.3	304	Gat/Tat																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275078	41275078	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	134	414	0	ENST00000349496.5:c.1244A>T	p.Asn415Ile	p.N415I	ENST00000349496	NM_001904.3	415	aAt/aTt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027080	71027080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	152	447	0	ENST00000318789.4:c.1247C>T	p.Pro416Leu	p.P416L	ENST00000318789	NM_032682.5	416	cCc/cTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542210	187542211	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	126	414	0	ENST00000441802.2:c.5529dup	p.His1844SerfsTer8	p.H1844Sfs*8	ENST00000441802	NM_005245.3	1843	-/T																																																																															
APC	324	MSKCC	GRCh37	5	112157591	112157592	+	splice_acceptor_variant	Splice_Site	INS	-	-	GTGCCAGCTCCTGTTGAACATCAGATCT			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	93	187	0	ENST00000257430.4:c.1314_1341dup		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
FLT4	2324	MSKCC	GRCh37	5	180057680	180057680	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	58	375	0	ENST00000261937.6:c.275A>G	p.Tyr92Cys	p.Y92C	ENST00000261937	NM_182925.4	92	tAc/tGc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199714	138199714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	85	417	0	ENST00000237289.4:c.1132C>T	p.Pro378Ser	p.P378S	ENST00000237289	NM_001270507.1	378	Ccc/Tcc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163924	152163924	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	102	326	0	ENST00000206249.3:c.643+2T>C		p.X215_splice	ENST00000206249	NM_000125.3	215																																																																																
HLA-B	3106	MSKCC	GRCh37	6	31322973	31322974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			803	97	426	0	ENST00000412585.2:c.922dup	p.Ile308AsnfsTer26	p.I308Nfs*26	ENST00000412585	NM_005514.6	308	atc/aAtc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32181942	32181942	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	74	369	2	ENST00000375023.3:c.2112del	p.Thr705ProfsTer26	p.T705Pfs*26	ENST00000375023	NM_004557.3	704	ggG/gg																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43739042	43739042	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1029847964		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	92	320	0	ENST00000523873.1:c.59A>G	p.His20Arg	p.H20R	ENST00000523873		20	cAt/cGt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120426	94120426	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs761641519		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	135	450	0	ENST00000369303.4:c.625A>G	p.Ile209Val	p.I209V	ENST00000369303	NM_004440.3	209	Att/Gtt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8338922	8338922	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	61	269	0	ENST00000356435.5:c.5379G>T	p.Arg1793Ser	p.R1793S	ENST00000356435		1793	agG/agT																																																																															
PHF6	84295	MSKCC	GRCh37	X	133547883	133547883	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	66	292	0	ENST00000332070.3:c.616A>G	p.Ser206Gly	p.S206G	ENST00000332070	NM_032458.2	206	Agt/Ggt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932825	39932825	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs926671988		P-0077907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	125	483	0	ENST00000378444.4:c.1774C>T	p.Pro592Ser	p.P592S	ENST00000378444	NM_001123385.1	592	Cca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0077908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	197	301	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735470	40735470	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761910971		P-0077908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			878	74	393	2	ENST00000373198.4:c.3403G>A	p.Val1135Met	p.V1135M	ENST00000373198	NM_133170.3	1135	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0077908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	88	347	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175322	112175322	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs1114167578		P-0077908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	227	336	0	ENST00000257430.4:c.4031C>G	p.Ser1344Ter	p.S1344*	ENST00000257430	NM_000038.5	1344	tCa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0077908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	375	236	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
GAB2	9846	MSKCC	GRCh37	11	77961356	77961356	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115664813		P-0077908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			786	93	414	0	ENST00000361507.4:c.467G>A	p.Arg156His	p.R156H	ENST00000361507	NM_080491.2	156	cGc/cAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922045	39922045	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1421615855		P-0077908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	290	392	0	ENST00000378444.4:c.4127G>C	p.Gly1376Ala	p.G1376A	ENST00000378444	NM_001123385.1	1376	gGa/gCa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0077910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	128	477	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																															
AKT3	10000	MSKCC	GRCh37	1	243858913	243858913	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	44	349	0	ENST00000263826.5:c.152T>A	p.Leu51His	p.L51H	ENST00000263826	NM_005465.4	51	cTc/cAc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs879499034		P-0077912-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	40	402	0	ENST00000250448.2:c.798C>A	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106747	27106747	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077912-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	63	523	0	ENST00000324856.7:c.6358G>T	p.Glu2120Ter	p.E2120*	ENST00000324856	NM_006015.4	2120	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0077912-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	79	320	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50492589	50492591	+	inframe_deletion	In_Frame_Del	DEL	CTA	CTA	-			P-0077912-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	66	339	0	ENST00000394963.4:c.1487_1489del	p.Tyr496del	p.Y496del	ENST00000394963	NM_003076.4	495	ttCTAc/ttc																																																																															
APLNR	187	MSKCC	GRCh37	11	57004307	57004307	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs370702287		P-0077920-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	39	397	0	ENST00000257254.3:c.172C>T	p.Arg58Trp	p.R58W	ENST00000257254		58	Cgg/Tgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29497003	29497003	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397514641		P-0077923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	87	256	0	ENST00000358273.4:c.574C>T	p.Arg192Ter	p.R192*	ENST00000358273	NM_001042492.2	192	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0077923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	179	659	7	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21341837	21341837	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587777177		P-0077923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	138	635	0	ENST00000215739.8:c.365C>T	p.Ser122Leu	p.S122L	ENST00000215739	NM_006767.3	122	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0077923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	98	312	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	58	477	0	ENST00000257430.4:c.4067del	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/ta																																																																															
PREX2	80243	MSKCC	GRCh37	8	69136816	69136816	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200020354		P-0077923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	108	401	2	ENST00000288368.4:c.4730C>T	p.Ala1577Val	p.A1577V	ENST00000288368	NM_024870.2	1577	gCg/gTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864172	57864172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			769	81	686	0	ENST00000228682.2:c.1649G>T	p.Ser550Ile	p.S550I	ENST00000228682	NM_005269.2	550	aGc/aTc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966079	25966079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	54	631	0	ENST00000435504.4:c.3127G>T	p.Glu1043Ter	p.E1043*	ENST00000435504		1043	Gag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81335723	81335723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	32	337	0	ENST00000222390.5:c.1637C>T	p.Ala546Val	p.A546V	ENST00000222390	NM_000601.4	546	gCt/gTt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0077926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	221	395	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720679	89720679	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs398123329		P-0077926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			70	80	97	0	ENST00000371953.3:c.830C>T	p.Thr277Ile	p.T277I	ENST00000371953	NM_000314.4	277	aCa/aTa																																																																															
EED	8726	MSKCC	GRCh37	11	85956290	85956290	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	273	335	0	ENST00000263360.6:c.19T>G	p.Ser7Ala	p.S7A	ENST00000263360	NM_003797.3	7	Tcg/Gcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0077927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	76	423	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0077927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	19	258	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0077927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	47	328	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0077927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	23	224	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397516896		P-0077927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	37	285	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114901047	114901048	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0077927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	62	382	0	ENST00000543371.1:c.659dup	p.Leu220PhefsTer108	p.L220Ffs*108	ENST00000543371	NM_001198531.1	219	-/T																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781324	3781326	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs587783502		P-0077930-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	52	393	0	ENST00000262367.5:c.5039_5041del	p.Ser1680del	p.S1680del	ENST00000262367	NM_004380.2	1680	tCCTtg/ttg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077930-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	24	217	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593548	48593615	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATATATAAAGGTTAGTTACAATTTTATTTGAATATTTTAGACTTAAAGCTCTATTTGTTGTCAAAAGA	ATATATAAAGGTTAGTTACAATTTTATTTGAATATTTTAGACTTAAAGCTCTATTTGTTGTCAAAAGA	-			P-0077930-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	42	305	0	ENST00000342988.3:c.1301_1308+60del		p.X434_splice	ENST00000342988	NM_005359.5	434																																																																																
TERT	7015	MSKCC	GRCh37	5	1255405	1255405	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs968981940		P-0077930-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	51	364	0	ENST00000310581.5:c.3154G>A	p.Ala1052Thr	p.A1052T	ENST00000310581	NM_198253.2	1052	Gca/Aca																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157431671	157431671	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077930-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	59	301	0	ENST00000346085.5:c.2347C>G	p.Gln783Glu	p.Q783E	ENST00000346085	NM_020732.3	783	Cag/Gag																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7984055	7984055	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0077930-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	67	377	0	ENST00000319144.4:c.571A>T	p.Lys191Ter	p.K191*	ENST00000319144	NM_001139.2	191	Aag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916918	178916920	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0077933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	123	286	0	ENST00000263967.3:c.305_307del	p.Ile102_Glu103delinsLys	p.I102_E103delinsK	ENST00000263967	NM_006218.2	102	aTTGaa/aaa																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986508	36986508	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	68	346	0	ENST00000354822.5:c.1181C>G	p.Thr394Ser	p.T394S	ENST00000354822	NM_001079668.2	394	aCc/aGc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061190	38061196	+	frameshift_variant	Frame_Shift_Del	DEL	TGAAGCG	TGAAGCG	CTT			P-0077933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	107	362	0	ENST00000250448.2:c.793_799delinsAAG	p.Arg265LysfsTer55	p.R265Kfs*55	ENST00000250448	NM_004496.3	265	CGCTTCAag/AAGag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37884151	37884151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			9921	605	243	0	ENST00000269571.5:c.3622C>T	p.His1208Tyr	p.H1208Y	ENST00000269571		1208	Cac/Tac																																																																															
RARA	5914	MSKCC	GRCh37	17	38511592	38511592	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758706699		P-0077944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	3697	212	0	ENST00000254066.5:c.1090C>T	p.Arg364Trp	p.R364W	ENST00000254066	NM_000964.3	364	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579378	7579378	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	227	234	0	ENST00000269305.4:c.309C>A	p.Tyr103Ter	p.Y103*	ENST00000269305	NM_001126112.2	103	taC/taA																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0077944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	112	236	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
STK19	8859	MSKCC	GRCh37	6	31939823	31939823	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs34548063		P-0077944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	116	222	0	ENST00000375331.2:c.50G>A	p.Trp17Ter	p.W17*	ENST00000375331	NM_004197.1	17	tGg/tAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945117	151945117	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	33	140	0	ENST00000262189.6:c.2402C>G	p.Pro801Arg	p.P801R	ENST00000262189	NM_170606.2	801	cCt/cGt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89354940	89354940	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	206	183	0	ENST00000301030.4:c.740A>G	p.Tyr247Cys	p.Y247C	ENST00000301030	NM_001256183.1	247	tAc/tGc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602646	10602646	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0077944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	112	238	0	ENST00000171111.5:c.932A>T	p.His311Leu	p.H311L	ENST00000171111	NM_203500.1	311	cAc/cTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272226	15272226	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0077944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	220	193	0	ENST00000263388.2:c.6213del	p.Leu2072TrpfsTer13	p.L2072Wfs*13	ENST00000263388	NM_000435.2	2071	ggG/gg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198281497	198281497	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	205	228	0	ENST00000335508.6:c.634C>G	p.Pro212Ala	p.P212A	ENST00000335508	NM_012433.2	212	Ccc/Gcc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204594	128204594	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	167	251	0	ENST00000341105.2:c.847C>G	p.Arg283Gly	p.R283G	ENST00000341105	NM_032638.4	283	Cgc/Ggc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176720994	176720994	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	235	250	0	ENST00000439151.2:c.6625G>T	p.Gly2209Trp	p.G2209W	ENST00000439151	NM_022455.4	2209	Ggg/Tgg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89712018	89712018	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0077946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	63	270	0	ENST00000371953.3:c.634+2T>A		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																																
MTOR	2475	MSKCC	GRCh37	1	11174510	11174510	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0077946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	100	317	0	ENST00000361445.4:c.7165G>A	p.Val2389Ile	p.V2389I	ENST00000361445	NM_004958.3	2389	Gtt/Att																																																																															
WT1	7490	MSKCC	GRCh37	11	32439149	32439149	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs764701739		P-0077946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	38	340	0	ENST00000332351.3:c.924G>C	p.Gln308His	p.Q308H	ENST00000332351	NM_024426.4	308	caG/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0077947-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	109	439	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589664	67589664	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0077947-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	112	276	0	ENST00000274335.5:c.1425+2T>G		p.X475_splice	ENST00000274335		475																																																																																
PARK2	5071	MSKCC	GRCh37	6	161781122	161781122	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0077947-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	50	284	1	ENST00000366898.1:c.1283del	p.Asn428MetfsTer7	p.N428Mfs*7	ENST00000366898	NM_004562.2	428	aAt/at																																																																															
RYBP	23429	MSKCC	GRCh37	3	72428268	72429290	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCAGAATGTCAGACTTTGGTCTAAATGAGGGAGATACAAAACAAACAAACAAACAAAAAAAACAGGCATTTAGAAGATATCTTGAATTCACTTGCAAAGTAATATCCTGTACTTAGTTAACCAGAAACTTACTTGGTTTTCTTGTTGGTATTTTTCTTGGTAACACTAGGACTAATTTCCTTGTCTTTCTCAGGTTTCTCTTTGTCCTGCTTTTCAACTTTCTCCTTCTTCTCCTTTTTAGGGGGTGGTGGGGTGGCATACTGTTGTGCCACTTGTTGTGCCACCAGCTGAGAATTGATCCGAGGTTTTCTGAAATGTTCAAAAAATATATATCACTATTTGCTTTATAAAGTTTTTAAACATTTTTATCTGGTCTCACATTCCTTGGGTATTTTATTACTGATATCTGCCAACTCAAAACTAAATTATAAGGTTCATGTTATTTCTGCATTATTTTGTATGGATTATTTAGTATGGATACTAAACTTTTCCTTTTTCAAAGGAAATGATACATTCACATGTGATAACACTAACATACACATCCCTGTGCAGTAAAATAGTTTTTGAGCCAATAAAACATGACAGTGTTTCTAAGAGTGCTGAGAACACTACTTCTTTCAAGCCGTCAAGATTATACTGACTGACAGCTTTCAAGTACTCCTGCTGCAGAGGGTTAATCTCATTTTATTAAATGGACACTGGTAATCCCTTGAAAAGAGAATGAAATTAGAAGTGTGACATTCACTCCTCAATCTAATTATTCCAACTTGTTCTGTTCCCCTGCAGCTCTGTGATTGGCACAGACAACACATAGAGAGCAACAAAGGTAACTATGGCTCATACTAGCTCCCAAGGGAGTGAAGACTGAAAGTCACTGTAAAAAAATCATACACAAGTGACACATTCATTGTGCCATAAACCATTATGTCTGTGCCAATCTCCAACTGACACTGGCTCTTAGCACTATTGTTCACAAATTCTAAGAGATGCCAAACACTTTCACAATGCATGACCATTCACA	TTTCAGAATGTCAGACTTTGGTCTAAATGAGGGAGATACAAAACAAACAAACAAACAAAAAAAACAGGCATTTAGAAGATATCTTGAATTCACTTGCAAAGTAATATCCTGTACTTAGTTAACCAGAAACTTACTTGGTTTTCTTGTTGGTATTTTTCTTGGTAACACTAGGACTAATTTCCTTGTCTTTCTCAGGTTTCTCTTTGTCCTGCTTTTCAACTTTCTCCTTCTTCTCCTTTTTAGGGGGTGGTGGGGTGGCATACTGTTGTGCCACTTGTTGTGCCACCAGCTGAGAATTGATCCGAGGTTTTCTGAAATGTTCAAAAAATATATATCACTATTTGCTTTATAAAGTTTTTAAACATTTTTATCTGGTCTCACATTCCTTGGGTATTTTATTACTGATATCTGCCAACTCAAAACTAAATTATAAGGTTCATGTTATTTCTGCATTATTTTGTATGGATTATTTAGTATGGATACTAAACTTTTCCTTTTTCAAAGGAAATGATACATTCACATGTGATAACACTAACATACACATCCCTGTGCAGTAAAATAGTTTTTGAGCCAATAAAACATGACAGTGTTTCTAAGAGTGCTGAGAACACTACTTCTTTCAAGCCGTCAAGATTATACTGACTGACAGCTTTCAAGTACTCCTGCTGCAGAGGGTTAATCTCATTTTATTAAATGGACACTGGTAATCCCTTGAAAAGAGAATGAAATTAGAAGTGTGACATTCACTCCTCAATCTAATTATTCCAACTTGTTCTGTTCCCCTGCAGCTCTGTGATTGGCACAGACAACACATAGAGAGCAACAAAGGTAACTATGGCTCATACTAGCTCCCAAGGGAGTGAAGACTGAAAGTCACTGTAAAAAAATCATACACAAGTGACACATTCATTGTGCCATAAACCATTATGTCTGTGCCAATCTCCAACTGACACTGGCTCTTAGCACTATTGTTCACAAATTCTAAGAGATGCCAAACACTTTCACAATGCATGACCATTCACA	-			P-0077947-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	43	312	0	ENST00000477973.2:c.424-712_622del		p.X142_splice	ENST00000477973	NM_012234.5	142																																																																																
CDKN1A	1026	MSKCC	GRCh37	6	36651963	36651963	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1404633931		P-0077947-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	60	350	0	ENST00000244741.5:c.85C>A	p.Gln29Lys	p.Q29K	ENST00000244741	NM_000389.4	29	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0077950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	78	357	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291860	15291860	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146214060		P-0077950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	62	399	0	ENST00000263388.2:c.2906G>A	p.Arg969Gln	p.R969Q	ENST00000263388	NM_000435.2	969	cGg/cAg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376152	118376152	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs770458074		P-0077950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	62	356	0	ENST00000534358.1:c.9545A>G	p.Asn3182Ser	p.N3182S	ENST00000534358	NM_005933.3	3182	aAt/aGt																																																																															
CYLD	1540	MSKCC	GRCh37	16	50785528	50785528	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0077950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	62	333	0	ENST00000398568.2:c.518G>T	p.Gly173Val	p.G173V	ENST00000398568	NM_001042412.1	173	gGt/gTt																																																																															
XIAP	331	MSKCC	GRCh37	X	123026602	123026602	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	17	540	0	ENST00000355640.3:c.1078C>G	p.Pro360Ala	p.P360A	ENST00000355640		360	Cca/Gca																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476311	88476311	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	51	330	0	ENST00000360948.2:c.1821C>G	p.Cys607Trp	p.C607W	ENST00000360948	NM_001012338.2	607	tgC/tgG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0077955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	164	486	0	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag																																																																															
NF2	4771	MSKCC	GRCh37	22	30074298	30074298	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	104	355	0	ENST00000338641.4:c.1560G>C	p.Glu520Asp	p.E520D	ENST00000338641	NM_000268.3	520	gaG/gaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	113	260	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIM1	5292	MSKCC	GRCh37	6	37138618	37138618	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs551680157		P-0077955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	185	451	0	ENST00000373509.5:c.152C>T	p.Ser51Leu	p.S51L	ENST00000373509	NM_002648.3	51	tCg/tTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16089988	16089988	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1415859702		P-0077955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	113	340	1	ENST00000268712.3:c.122C>T	p.Pro41Leu	p.P41L	ENST00000268712	NM_006311.3	41	cCt/cTt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31388693	31388693	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0077955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	132	373	0	ENST00000328111.2:c.1958A>T	p.Asp653Val	p.D653V	ENST00000328111	NM_006892.3	653	gAt/gTt																																																																															
PARP1	142	MSKCC	GRCh37	1	226578303	226578303	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0077955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	161	427	0	ENST00000366794.5:c.425A>C	p.Lys142Thr	p.K142T	ENST00000366794	NM_001618.3	142	aAg/aCg																																																																															
APC	324	MSKCC	GRCh37	5	112179123	112179123	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778037		P-0077955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	28	374	0	ENST00000257430.4:c.7832C>A	p.Thr2611Lys	p.T2611K	ENST00000257430	NM_000038.5	2611	aCa/aAa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285321	212285321	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	115	369	0	ENST00000342788.4:c.2980A>G	p.Lys994Glu	p.K994E	ENST00000342788	NM_005235.2	994	Aag/Gag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435829	110435829	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	246	413	0	ENST00000375856.3:c.2572C>G	p.Pro858Ala	p.P858A	ENST00000375856	NM_003749.2	858	Ccc/Gcc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148511215	148511215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0077955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	140	334	0	ENST00000320356.2:c.1687C>T	p.Pro563Ser	p.P563S	ENST00000320356	NM_004456.4	563	Ccg/Tcg																																																																															
REST	5978	MSKCC	GRCh37	4	57798130	57798130	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0077955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	96	393	0	ENST00000309042.7:c.3106C>G	p.Arg1036Gly	p.R1036G	ENST00000309042	NM_005612.4	1036	Cgg/Ggg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0077959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	220	462	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951994	178951994	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	69	344	0	ENST00000263967.3:c.3049G>C	p.Asp1017His	p.D1017H	ENST00000263967	NM_006218.2	1017	Gat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0077959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	145	237	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63545705	63545706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTGGTG			P-0077959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	170	389	0	ENST00000307078.5:c.882_888dup	p.Ala297HisfsTer7	p.A297Hfs*7	ENST00000307078	NM_004655.3	296	-/CACCAGC																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	136	277	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162803	47162803	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0077960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	135	297	0	ENST00000409792.3:c.3323C>A	p.Ser1108Ter	p.S1108*	ENST00000409792	NM_014159.6	1108	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0077962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	199	342	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs879255270		P-0077962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	79	425	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931589		P-0077962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	187	453	0	ENST00000349496.5:c.101G>A	p.Gly34Glu	p.G34E	ENST00000349496	NM_001904.3	34	gGa/gAa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066937	30066937	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771413120		P-0077962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	138	306	0	ENST00000331968.5:c.2194C>T	p.Arg732Trp	p.R732W	ENST00000331968	NM_002742.2	732	Cgg/Tgg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94219198	94219198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	62	355	0	ENST00000323929.3:c.206G>A	p.Arg69Lys	p.R69K	ENST00000323929	NM_005591.3	69	aGg/aAg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0077987-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	214	556	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519946		P-0077987-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	106	613	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077987-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	300	456	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																															
ALK	238	MSKCC	GRCh37	2	29754943	29754943	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0077987-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	95	560	0	ENST00000389048.3:c.992A>G	p.His331Arg	p.H331R	ENST00000389048	NM_004304.4	331	cAc/cGc																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0077987-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	132	399	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412323	63412323	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077987-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	194	361	0	ENST00000330258.3:c.844G>T	p.Glu282Ter	p.E282*	ENST00000330258	NM_152424.3	282	Gag/Tag																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230459314	230459314	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs578048672		P-0077987-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	173	548	1	ENST00000525115.1:c.1225G>T	p.Ala409Ser	p.A409S	ENST00000525115		409	Gcc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0077989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	36	286	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991805	72991805	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	40	498	0	ENST00000268489.5:c.2240C>G	p.Ser747Cys	p.S747C	ENST00000268489	NM_006885.3	747	tCt/tGt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374935	45374935	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0077989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	98	411	0	ENST00000262160.6:c.908C>G	p.Thr303Arg	p.T303R	ENST00000262160	NM_005901.5	303	aCa/aGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs397517199		P-0077989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	31	326	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112173590	112173590	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	38	440	0	ENST00000257430.4:c.2299C>T	p.Gln767Ter	p.Q767*	ENST00000257430	NM_000038.5	767	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0077989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	84	515	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515232	149515232	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80162387		P-0077989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	57	562	0	ENST00000261799.4:c.250G>A	p.Val84Met	p.V84M	ENST00000261799	NM_002609.3	84	Gtg/Atg																																																																															
ARAF	369	MSKCC	GRCh37	X	47429346	47429346	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755229896		P-0077989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	54	227	0	ENST00000377045.4:c.1474G>A	p.Val492Ile	p.V492I	ENST00000377045	NM_001654.4	492	Gtc/Atc																																																																															
TET1	80312	MSKCC	GRCh37	10	70333949	70333949	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs778956029		P-0077989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	50	477	0	ENST00000373644.4:c.1854C>G	p.Ile618Met	p.I618M	ENST00000373644	NM_030625.2	618	atC/atG																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112888256	112888256	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0077989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	43	424	0	ENST00000351677.2:c.272A>C	p.Lys91Thr	p.K91T	ENST00000351677	NM_002834.3	91	aAg/aCg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187516873	187516873	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs759822733		P-0077989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	51	387	0	ENST00000441802.2:c.13108T>C	p.Ser4370Pro	p.S4370P	ENST00000441802	NM_005245.3	4370	Tcc/Ccc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411378	63411378	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0077989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	48	282	0	ENST00000330258.3:c.1789G>T	p.Glu597Ter	p.E597*	ENST00000330258	NM_152424.3	597	Gag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0077993-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	258	334	0	ENST00000346208.3:c.1003dup	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077993-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	146	446	1	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865510	57865510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0077993-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			795	158	526	0	ENST00000228682.2:c.2987C>T	p.Pro996Leu	p.P996L	ENST00000228682	NM_005269.2	996	cCc/cTc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114724349	114724349	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780519218		P-0077994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	72	386	0	ENST00000543371.1:c.416C>T	p.Ala139Val	p.A139V	ENST00000543371	NM_001198531.1	139	gCg/gTg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038879	12038879	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0077994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	136	508	0	ENST00000396373.4:c.1172A>G	p.Tyr391Cys	p.Y391C	ENST00000396373	NM_001987.4	391	tAt/tGt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0077994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	115	426	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																															
PGR	5241	MSKCC	GRCh37	11	100962538	100962538	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0077994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	86	356	0	ENST00000325455.5:c.1859del	p.Pro620GlnfsTer29	p.P620Qfs*29	ENST00000325455	NM_001202474.3	620	cCa/ca																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71090649	71090649	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0077994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	98	462	0	ENST00000318789.4:c.699del	p.Glu234LysfsTer2	p.E234Kfs*2	ENST00000318789	NM_032682.5	233	aaA/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0077996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	76	390	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100943	27100943	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0077996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			52	57	393	0	ENST00000324856.7:c.4225C>T	p.Gln1409Ter	p.Q1409*	ENST00000324856	NM_006015.4	1409	Cag/Tag																																																																															
CDH1	999	MSKCC	GRCh37	16	68863675	68863678	+	frameshift_variant	Frame_Shift_Del	DEL	ATGA	ATGA	TGT			P-0077996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			79	68	327	1	ENST00000261769.5:c.2414_2417delinsTGT	p.Asp805ValfsTer2	p.D805Vfs*2	ENST00000261769	NM_004360.3	805	gATGAa/gTGTa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115875	8115877	+	frameshift_variant	Frame_Shift_Del	DEL	GCC	GCC	T			P-0077996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	83	485	0	ENST00000346208.3:c.1221_1223delinsT	p.Pro408LeufsTer98	p.P408Lfs*98	ENST00000346208		407	tcGCCc/tcTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0077998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	21	318	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
AR	367	MSKCC	GRCh37	X	66766141	66766141	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200067740		P-0077998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	14	182	0	ENST00000374690.3:c.1153G>T	p.Ala385Ser	p.A385S	ENST00000374690	NM_000044.3	385	Gct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078017-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			487	163	467	1	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																															
ATR	545	MSKCC	GRCh37	3	142204007	142204007	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369309229		P-0078017-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	42	319	0	ENST00000350721.4:c.6196C>T	p.Arg2066Trp	p.R2066W	ENST00000350721	NM_001184.3	2066	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0078017-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			139	81	265	2	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089543	27089543	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078017-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			550	187	500	0	ENST00000324856.7:c.2502del	p.Met835TrpfsTer24	p.M835Wfs*24	ENST00000324856	NM_006015.4	833	aaC/aa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966642	25966642	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs762630527		P-0078017-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			348	128	360	0	ENST00000435504.4:c.2564T>C	p.Val855Ala	p.V855A	ENST00000435504		855	gTt/gCt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703631	47703631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63750636		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	55	285	0	ENST00000233146.2:c.2131C>T	p.Arg711Ter	p.R711*	ENST00000233146	NM_000251.2	711	Cga/Tga																																																																															
AXL	558	MSKCC	GRCh37	19	41736935	41736935	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776682499		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	80	405	1	ENST00000301178.4:c.650G>A	p.Arg217His	p.R217H	ENST00000301178	NM_021913.4	217	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	81	416	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	56	369	3	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	60	354	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
CDH1	999	MSKCC	GRCh37	16	68849514	68849514	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs36087757		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	68	356	0	ENST00000261769.5:c.1417G>A	p.Val473Ile	p.V473I	ENST00000261769	NM_004360.3	473	Gtc/Atc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	61	340	0	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022443	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-	rs750318549		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	59	378	0	ENST00000375687.4:c.1933_1934del	p.Gly645TrpfsTer12	p.G645Wfs*12	ENST00000375687	NM_015338.5	643	GGg/g																																																																															
ARAF	369	MSKCC	GRCh37	X	47426513	47426513	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376276271		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	63	219	0	ENST00000377045.4:c.856G>A	p.Asp286Asn	p.D286N	ENST00000377045	NM_001654.4	286	Gat/Aat																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557476	21557476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	65	352	0	ENST00000382592.4:c.2369G>A	p.Arg790Gln	p.R790Q	ENST00000382592	NM_014572.2	790	cGa/cAa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532517	63532517	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	146	448	0	ENST00000307078.5:c.2062del	p.Leu688Ter	p.L688*	ENST00000307078	NM_004655.3	688	Ctg/tg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78933971	78933971	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771723844		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	51	368	0	ENST00000306801.3:c.3571C>T	p.Arg1191Cys	p.R1191C	ENST00000306801	NM_020761.2	1191	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	48	298	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																															
CASP8	841	MSKCC	GRCh37	2	202141631	202141631	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs17860424		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	54	303	0	ENST00000358485.4:c.919C>T	p.Arg307Trp	p.R307W	ENST00000358485	NM_001080125.1	307	Cgg/Tgg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52705200	52705200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	55	305	0	ENST00000322088.6:c.82C>T	p.Arg28Cys	p.R28C	ENST00000322088	NM_014225.5	28	Cgc/Tgc																																																																															
CDK6	1021	MSKCC	GRCh37	7	92404075	92404075	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1178575524		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	44	258	0	ENST00000265734.4:c.304G>A	p.Asp102Asn	p.D102N	ENST00000265734	NM_001259.6	102	Gat/Aat																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932085	39932085	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	60	210	0	ENST00000378444.4:c.2514del	p.Lys839SerfsTer17	p.K839Sfs*17	ENST00000378444	NM_001123385.1	838	ccC/cc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2103409	2103409	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372321790		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	35	264	0	ENST00000219476.3:c.292C>T	p.Arg98Trp	p.R98W	ENST00000219476	NM_000548.3	98	Cgg/Tgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827732	72827732	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1241554729		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	41	303	0	ENST00000268489.5:c.8849G>A	p.Arg2950His	p.R2950H	ENST00000268489	NM_006885.3	2950	cGc/cAc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	26	334	0	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	72	339	0	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
FANCC	2176	MSKCC	GRCh37	9	97869536	97869536	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1800367		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	62	334	0	ENST00000289081.3:c.1345G>A	p.Val449Met	p.V449M	ENST00000289081	NM_000136.2	449	Gtg/Atg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966872	25966873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	61	420	0	ENST00000435504.4:c.2333dup	p.Val779SerfsTer25	p.V779Sfs*25	ENST00000435504		778	cca/ccCa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959109	2959109	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767537938		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	52	337	0	ENST00000396946.4:c.2407G>A	p.Val803Ile	p.V803I	ENST00000396946	NM_032415.4	803	Gtc/Atc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1297203260		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	63	381	0	ENST00000245479.2:c.916del	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	46	354	1	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909464	50909464	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199576140		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	34	386	0	ENST00000440232.2:c.1268G>A	p.Arg423His	p.R423H	ENST00000440232	NM_002691.3	423	cGt/cAt																																																																															
ERG	2078	MSKCC	GRCh37	21	39817414	39817414	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs542019196		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	46	339	0	ENST00000288319.7:c.149G>A	p.Arg50His	p.R50H	ENST00000288319	NM_182918.3	50	cGc/cAc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979986	7979987	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs746723399		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	59	382	1	ENST00000319144.4:c.1350dup	p.Leu451AlafsTer27	p.L451Afs*27	ENST00000319144	NM_001139.2	450	-/G																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562949	21562949	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1461231287		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	45	386	0	ENST00000382592.4:c.970G>A	p.Ala324Thr	p.A324T	ENST00000382592	NM_014572.2	324	Gcg/Acg																																																																															
TP63	8626	MSKCC	GRCh37	3	189582134	189582135	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	60	382	0	ENST00000264731.3:c.699dup	p.Ala234SerfsTer2	p.A234Sfs*2	ENST00000264731	NM_003722.4	231	-/A																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137525525	137525525	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146687518		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	41	270	0	ENST00000367739.4:c.490G>A	p.Glu164Lys	p.E164K	ENST00000367739	NM_000416.2	164	Gaa/Aaa																																																																															
B2M	567	MSKCC	GRCh37	15	45007741	45007742	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	48	381	0	ENST00000558401.1:c.194_195del	p.Arg65AsnfsTer2	p.R65Nfs*2	ENST00000558401	NM_004048.2	63	gGA/g																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	76	414	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43707915	43707915	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	64	365	0	ENST00000382044.4:c.4966C>T	p.Arg1656Ter	p.R1656*	ENST00000382044	NM_001141980.1	1656	Cga/Tga																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281176	49281176	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758137158		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	49	349	0	ENST00000282018.3:c.223G>A	p.Val75Ile	p.V75I	ENST00000282018	NM_020377.2	75	Gtt/Att																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633363	3633363	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776578234		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	68	393	0	ENST00000294008.3:c.4888G>A	p.Ala1630Thr	p.A1630T	ENST00000294008	NM_032444.2	1630	Gcc/Acc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11924261	11924262	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	44	423	1	ENST00000353533.5:c.63dup	p.Gly22ArgfsTer19	p.G22Rfs*19	ENST00000353533	NM_003010.3	20	acc/aCcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435199	49435199	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	60	345	1	ENST00000301067.7:c.6354del	p.Ala2119LeufsTer25	p.A2119Lfs*25	ENST00000301067	NM_003482.3	2118	ccC/cc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048237	180048237	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754733831		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	55	367	0	ENST00000261937.6:c.2036G>A	p.Arg679Gln	p.R679Q	ENST00000261937	NM_182925.4	679	cGg/cAg																																																																															
SMYD3	64754	MSKCC	GRCh37	1	245927443	245927443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	40	300	2	ENST00000388985.4:c.1085del	p.Phe362SerfsTer12	p.F362Sfs*12	ENST00000388985		362	tTc/tc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271304	18271304	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs553673157		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	61	367	0	ENST00000222254.8:c.346G>A	p.Glu116Lys	p.E116K	ENST00000222254	NM_005027.3	116	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916646	178916646	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	37	234	0	ENST00000263967.3:c.33G>T	p.Trp11Cys	p.W11C	ENST00000263967	NM_006218.2	11	tgG/tgT																																																																															
JAK1	3716	MSKCC	GRCh37	1	65310518	65310518	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1307956862		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	57	365	0	ENST00000342505.4:c.2170C>T	p.Arg724Cys	p.R724C	ENST00000342505	NM_002227.2	724	Cgt/Tgt																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099211	4099211	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770521279		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	36	325	0	ENST00000262948.5:c.907C>T	p.Arg303Cys	p.R303C	ENST00000262948	NM_030662.3	303	Cgc/Tgc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864218	57864218	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	80	406	2	ENST00000228682.2:c.1700del	p.Pro567LeufsTer46	p.P567Lfs*46	ENST00000228682	NM_005269.2	565	ttC/tt																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128030506	128030506	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1313043237		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	33	238	0	ENST00000285398.2:c.1762del	p.Glu588LysfsTer23	p.E588Kfs*23	ENST00000285398	NM_000122.1	588	Gaa/aa																																																																															
TOP1	7150	MSKCC	GRCh37	20	39750424	39750424	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1481780173		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	55	345	0	ENST00000361337.2:c.2039C>T	p.Thr680Met	p.T680M	ENST00000361337	NM_003286.2	680	aCg/aTg																																																																															
ACVR1	90	MSKCC	GRCh37	2	158634720	158634720	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777150519		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	53	368	0	ENST00000263640.3:c.466C>T	p.Arg156Cys	p.R156C	ENST00000263640	NM_001105.4	156	Cgc/Tgc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163775	152163775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	66	296	0	ENST00000206249.3:c.496G>A	p.Ala166Thr	p.A166T	ENST00000206249	NM_000125.3	166	Gcc/Acc																																																																															
FH	2271	MSKCC	GRCh37	1	241671944	241671944	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781682		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	29	231	0	ENST00000366560.3:c.697C>T	p.Arg233Cys	p.R233C	ENST00000366560	NM_000143.3	233	Cgt/Tgt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279340	18279340	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	62	411	0	ENST00000222254.8:c.1796del	p.Asn599MetfsTer38	p.N599Mfs*38	ENST00000222254	NM_005027.3	598	Aaa/aa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214389	36214389	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	49	332	0	ENST00000222270.7:c.3043C>T	p.Arg1015Ter	p.R1015*	ENST00000222270	NM_014727.1	1015	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023727	31023727	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs531415735		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	72	330	0	ENST00000375687.4:c.3212C>T	p.Ala1071Val	p.A1071V	ENST00000375687	NM_015338.5	1071	gCg/gTg																																																																															
TEK	7010	MSKCC	GRCh37	9	27169499	27169499	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs573385848		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	59	316	0	ENST00000380036.4:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000380036	NM_000459.3	167	cGg/cAg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655200	45655200	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1199628286		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	52	264	0	ENST00000407780.3:c.652G>T	p.Glu218Ter	p.E218*	ENST00000407780	NM_001283052.1	218	Gag/Tag																																																																															
TERT	7015	MSKCC	GRCh37	5	1271250	1271250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1046621943		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	38	287	0	ENST00000310581.5:c.2452G>A	p.Val818Met	p.V818M	ENST00000310581	NM_198253.2	818	Gtg/Atg																																																																															
SESN1	27244	MSKCC	GRCh37	6	109321872	109321872	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745757510		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	31	213	0	ENST00000436639.2:c.551C>T	p.Ala184Val	p.A184V	ENST00000436639	NM_014454.2	184	gCg/gTg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57474013	57474013	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140388147		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	45	251	0	ENST00000371085.3:c.230C>T	p.Pro77Leu	p.P77L	ENST00000371085	NM_000516.4	77	cCg/cTg																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5549476	5549476	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	57	353	0	ENST00000397747.3:c.503G>T	p.Arg168Met	p.R168M	ENST00000397747	NM_025239.3	168	aGg/aTg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753044	42753044	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1390865410		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	59	435	0	ENST00000222329.4:c.1220G>A	p.Gly407Asp	p.G407D	ENST00000222329	NM_006494.2	407	gGc/gAc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24129417	24129417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	47	287	0	ENST00000263121.7:c.61G>A	p.Asp21Asn	p.D21N	ENST00000263121	NM_003073.3	21	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	25	205	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	54	402	3	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
GAB1	2549	MSKCC	GRCh37	4	144258384	144258385	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755581817		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	41	270	0	ENST00000262994.4:c.50dup	p.Glu18GlyfsTer34	p.E18Gfs*34	ENST00000262994	NM_002039.3	15	tcc/tCcc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201980352	201980352	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	51	416	0	ENST00000359651.3:c.92del	p.Pro31LeufsTer12	p.P31Lfs*12	ENST00000359651		30	Ccc/cc																																																																															
TET1	80312	MSKCC	GRCh37	10	70446375	70446375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	69	399	0	ENST00000373644.4:c.5315C>T	p.Ala1772Val	p.A1772V	ENST00000373644	NM_030625.2	1772	gCa/gTa																																																																															
MET	4233	MSKCC	GRCh37	7	116397828	116397828	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	51	284	0	ENST00000397752.3:c.2102G>T	p.Ser701Ile	p.S701I	ENST00000397752	NM_000245.2	701	aGt/aTt																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29438489	29438489	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	50	230	0	ENST00000544604.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000544604	NM_001206998.1	145	Cga/Tga																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29440867	29440867	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1188411932		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	43	298	0	ENST00000544604.2:c.733C>T	p.Arg245Ter	p.R245*	ENST00000544604	NM_001206998.1	245	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214457	5214457	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147152459		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	57	395	0	ENST00000357368.4:c.4529C>T	p.Thr1510Met	p.T1510M	ENST00000357368	NM_002850.3	1510	aCg/aTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713424	30713425	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	68	405	0	ENST00000359013.4:c.828dup	p.Lys277GlufsTer6	p.K277Efs*6	ENST00000359013	NM_001024847.2	275	gtg/gtGg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156830886	156830886	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	35	393	0	ENST00000524377.1:c.163del	p.Ala55ProfsTer14	p.A55Pfs*14	ENST00000524377	NM_002529.3	54	Ggg/gg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119887	70119887	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	50	372	0	ENST00000245479.2:c.889T>C	p.Tyr297His	p.Y297H	ENST00000245479	NM_000346.3	297	Tac/Cac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3860616	3860616	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	36	262	0	ENST00000262367.5:c.963C>G	p.Asn321Lys	p.N321K	ENST00000262367	NM_004380.2	321	aaC/aaG																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29442728	29442728	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	55	260	0	ENST00000544604.2:c.769C>T	p.Gln257Ter	p.Q257*	ENST00000544604	NM_001206998.1	257	Cag/Tag																																																																															
BBC3	27113	MSKCC	GRCh37	19	47725112	47725112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	42	424	0	ENST00000449228.1:c.632G>T	p.Gly211Val	p.G211V	ENST00000449228	NM_001127240.2	211	gGg/gTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157470059	157470059	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	40	274	0	ENST00000346085.5:c.2853G>T	p.Gln951His	p.Q951H	ENST00000346085	NM_020732.3	951	caG/caT																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528937	157528937	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1302430069		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	44	325	1	ENST00000346085.5:c.6662G>A	p.Arg2221Gln	p.R2221Q	ENST00000346085	NM_020732.3	2221	cGg/cAg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25497869	25497869	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	37	318	0	ENST00000264709.3:c.580G>A	p.Asp194Asn	p.D194N	ENST00000264709	NM_175629.2	194	Gac/Aac																																																																															
CIC	23152	MSKCC	GRCh37	19	42797234	42797234	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772474536		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	60	434	0	ENST00000575354.2:c.3596G>A	p.Arg1199Gln	p.R1199Q	ENST00000575354	NM_015125.3	1199	cGg/cAg																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47599466	47599466	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866688838		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	60	375	0	ENST00000395288.2:c.86G>A	p.Arg29His	p.R29H	ENST00000395288	NM_016506.5	29	cGt/cAt																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250826	26250826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	42	367	0	ENST00000446824.2:c.8G>A	p.Arg3His	p.R3H	ENST00000446824	NM_021018.2	3	cGc/cAc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066520	94066520	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	47	306	0	ENST00000369303.4:c.1239del	p.Phe413LeufsTer6	p.F413Lfs*6	ENST00000369303	NM_004440.3	413	ttT/tt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662160	227662160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	60	411	0	ENST00000305123.5:c.1295G>A	p.Gly432Asp	p.G432D	ENST00000305123	NM_005544.2	432	gGc/gAc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852570	63852570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	62	322	0	ENST00000279873.7:c.3348G>A	p.Met1116Ile	p.M1116I	ENST00000279873	NM_032199.2	1116	atG/atA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55224525	55224525	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	39	264	0	ENST00000275493.2:c.1207G>A	p.Gly403Arg	p.G403R	ENST00000275493	NM_005228.3	403	Ggg/Agg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423640	88423640	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	40	328	0	ENST00000360948.2:c.2195T>C	p.Leu732Pro	p.L732P	ENST00000360948	NM_001012338.2	732	cTc/cCc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107159	27107159	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs906618579		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	50	389	0	ENST00000324856.7:c.6770G>A	p.Arg2257Gln	p.R2257Q	ENST00000324856	NM_006015.4	2257	cGg/cAg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67662285	67662285	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs775406577		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	60	293	0	ENST00000264010.4:c.1531A>G	p.Ile511Val	p.I511V	ENST00000264010	NM_006565.3	511	Atc/Gtc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925666	114925666	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1405418616		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	63	346	0	ENST00000543371.1:c.1744T>C	p.Ser582Pro	p.S582P	ENST00000543371	NM_001198531.1	582	Tcc/Ccc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134287	11134287	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1415464964		P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	44	280	0	ENST00000344626.4:c.2953G>A	p.Glu985Lys	p.E985K	ENST00000344626	NM_003072.3	985	Gag/Aag																																																																															
MGA	23269	MSKCC	GRCh37	15	42057134	42057134	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	44	340	0	ENST00000219905.7:c.7795A>T	p.Thr2599Ser	p.T2599S	ENST00000219905	NM_001164273.1	2599	Act/Tct																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8436660	8436660	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	37	256	0	ENST00000356435.5:c.4018T>A	p.Leu1340Met	p.L1340M	ENST00000356435		1340	Ttg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0078028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	129	324	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0078028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	75	214	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117761	70117761	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	284	384	0	ENST00000245479.2:c.229G>T	p.Val77Phe	p.V77F	ENST00000245479	NM_000346.3	77	Gtc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380254	25380254	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	165	253	0	ENST00000256078.4:c.204G>C	p.Arg68Ser	p.R68S	ENST00000256078	NM_033360.2	68	agG/agC																																																																															
TP63	8626	MSKCC	GRCh37	3	189456560	189456560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	95	307	0	ENST00000264731.3:c.321G>A	p.Met107Ile	p.M107I	ENST00000264731	NM_003722.4	107	atG/atA																																																																															
APC	324	MSKCC	GRCh37	5	112173556	112173556	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	14	319	0	ENST00000257430.4:c.2265G>T	p.Arg755Ser	p.R755S	ENST00000257430	NM_000038.5	755	agG/agT																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936829	150936829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	151	311	1	ENST00000271640.5:c.3865C>T	p.Arg1289Cys	p.R1289C	ENST00000271640	NM_001145415.1	1289	Cgt/Tgt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111145	193111146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG	rs1374189523		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	67	287	0	ENST00000367435.3:c.687_688dup	p.Val230GlufsTer28	p.V230Efs*28	ENST00000367435	NM_024529.4	226	-/AG																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933199	36933199	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	140	318	0	ENST00000361632.4:c.1918A>G	p.Thr640Ala	p.T640A	ENST00000361632		640	Acc/Gcc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	108	256	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856283	111856283	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1420086510		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	105	290	0	ENST00000341259.2:c.334G>A	p.Ala112Thr	p.A112T	ENST00000341259	NM_005475.2	112	Gcc/Acc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	174	371	2	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
POLE	5426	MSKCC	GRCh37	12	133245023	133245024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs767646338		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	132	370	0	ENST00000320574.5:c.2091dup	p.Phe699ValfsTer11	p.F699Vfs*11	ENST00000320574	NM_006231.2	697	-/C																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18691148	18691148	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs551745518		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	59	226	0	ENST00000266497.5:c.3263del	p.Asn1088ThrfsTer27	p.N1088Tfs*27	ENST00000266497		1087	Aaa/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs770248150		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	145	227	0	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964143	28964143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766569666		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	204	242	0	ENST00000282397.4:c.1759G>A	p.Val587Ile	p.V587I	ENST00000282397	NM_002019.4	587	Gtt/Att																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910932	32910932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	168	240	0	ENST00000380152.3:c.2440C>T	p.Pro814Ser	p.P814S	ENST00000380152		814	Ccc/Tcc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911073	32911074	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1357556348		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	143	279	0	ENST00000380152.3:c.2588dup	p.Asn863LysfsTer18	p.N863Kfs*18	ENST00000380152		861	caa/cAaa																																																																															
MGA	23269	MSKCC	GRCh37	15	42058900	42058900	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs116439074		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	140	295	0	ENST00000219905.7:c.8620A>G	p.Thr2874Ala	p.T2874A	ENST00000219905	NM_001164273.1	2874	Act/Gct																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029329	14029329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	168	356	0	ENST00000311895.7:c.1540T>C	p.Tyr514His	p.Y514H	ENST00000311895	NM_005236.2	514	Tat/Cat																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222320	2222320	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	126	355	0	ENST00000326181.6:c.604A>G	p.Ile202Val	p.I202V	ENST00000326181	NM_032271.2	202	Atc/Gtc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67650714	67650714	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	183	310	0	ENST00000264010.4:c.1019A>G	p.His340Arg	p.H340R	ENST00000264010	NM_006565.3	340	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68847400	68847400	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	157	265	0	ENST00000261769.5:c.1320+2T>G		p.X440_splice	ENST00000261769	NM_004360.3	440																																																																																
SOX9	6662	MSKCC	GRCh37	17	70119023	70119024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	360	350	0	ENST00000245479.2:c.600dup	p.Asn201GlnfsTer51	p.N201Qfs*51	ENST00000245479	NM_000346.3	199	tcc/tCcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	69	393	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
YES1	7525	MSKCC	GRCh37	18	747987	747987	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202083013		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	90	250	0	ENST00000314574.4:c.403G>A	p.Ala135Thr	p.A135T	ENST00000314574	NM_005433.3	135	Gct/Act																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792392	33792392	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768306446		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	161	315	0	ENST00000498907.2:c.929C>T	p.Thr310Met	p.T310M	ENST00000498907	NM_004364.3	310	aCg/aTg																																																																															
ERF	2077	MSKCC	GRCh37	19	42752723	42752723	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1410725157		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	146	364	0	ENST00000222329.4:c.1541G>A	p.Arg514His	p.R514H	ENST00000222329	NM_006494.2	514	cGt/cAt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469630	25469630	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762563426		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	112	318	0	ENST00000264709.3:c.1138G>A	p.Ala380Thr	p.A380T	ENST00000264709	NM_175629.2	380	Gcg/Acg																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919836	96919836	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772153618		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	118	259	0	ENST00000258439.3:c.427G>A	p.Val143Ile	p.V143I	ENST00000258439	NM_001193304.2	143	Gtc/Atc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	104	356	7	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
TOP1	7150	MSKCC	GRCh37	20	39725983	39725983	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	94	201	0	ENST00000361337.2:c.852+2T>C		p.X284_splice	ENST00000361337	NM_003286.2	284																																																																																
EP300	2033	MSKCC	GRCh37	22	41573977	41573977	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201569846		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	55	358	0	ENST00000263253.7:c.6262C>T	p.Arg2088Trp	p.R2088W	ENST00000263253	NM_001429.3	2088	Cgg/Tgg																																																																															
ATR	545	MSKCC	GRCh37	3	142268984	142268984	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs558627427		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	31	211	0	ENST00000350721.4:c.2966G>A	p.Arg989His	p.R989H	ENST00000350721	NM_001184.3	989	cGt/cAt																																																																															
ATR	545	MSKCC	GRCh37	3	142269074	142269074	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	110	232	0	ENST00000350721.4:c.2876T>C	p.Val959Ala	p.V959A	ENST00000350721	NM_001184.3	959	gTg/gCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	106	251	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TET2	54790	MSKCC	GRCh37	4	106197505	106197506	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	118	258	0	ENST00000380013.4:c.5844dup	p.Val1949SerfsTer7	p.V1949Sfs*7	ENST00000380013	NM_001127208.2	1946	-/A																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542203	187542203	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1357031500		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	154	348	0	ENST00000441802.2:c.5537C>T	p.Thr1846Ile	p.T1846I	ENST00000441802	NM_005245.3	1846	aCc/aTc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748048	41748048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	44	197	0	ENST00000226382.2:c.721G>A	p.Ala241Thr	p.A241T	ENST00000226382	NM_003924.3	241	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	116	346	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520464	176520464	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs558220864		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	132	329	0	ENST00000292408.4:c.1309C>T	p.Arg437Cys	p.R437C	ENST00000292408	NM_213647.1	437	Cgt/Tgt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755445139		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	92	321	1	ENST00000261937.6:c.89dup	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31238885	31238885	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs281860538		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	67	248	0	ENST00000376228.5:c.584A>G	p.Tyr195Cys	p.Y195C	ENST00000376228	NM_002117.5	195	tAc/tGc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324033	31324033	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151341301		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	17	83	0	ENST00000412585.2:c.530C>T	p.Ala177Val	p.A177V	ENST00000412585	NM_005514.6	177	gCg/gTg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32806009	32806009	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1397817921		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	157	330	0	ENST00000374899.4:c.2T>C	p.Met1?	p.M1?	ENST00000374899	NM_018833.2	1	aTg/aCg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33286540	33286540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	152	211	0	ENST00000374542.5:c.2203G>A	p.Val735Met	p.V735M	ENST00000374542	NM_001141970.1	735	Gtg/Atg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845609	151845609	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369745886		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	154	343	0	ENST00000262189.6:c.13403C>T	p.Thr4468Met	p.T4468M	ENST00000262189	NM_170606.2	4468	aCg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874012	151874013	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	119	331	0	ENST00000262189.6:c.8525dup	p.Asn2842LysfsTer2	p.N2842Kfs*2	ENST00000262189	NM_170606.2	2842	aat/aaAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874147	151874148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	74	277	0	ENST00000262189.6:c.8389_8390dup	p.Glu2798ArgfsTer26	p.E2798Rfs*26	ENST00000262189	NM_170606.2	2797	aag/aaAAg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968322	2968323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762770988		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	57	287	1	ENST00000396946.4:c.1663dup	p.Arg555ProfsTer38	p.R555Pfs*38	ENST00000396946	NM_032415.4	555	cgg/cCgg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402764	139402764	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758471372		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	169	358	1	ENST00000277541.6:c.3245G>A	p.Arg1082His	p.R1082H	ENST00000277541	NM_017617.3	1082	cGc/cAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411812	63411813	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	132	371	0	ENST00000330258.3:c.1354dup	p.Glu452GlyfsTer8	p.E452Gfs*8	ENST00000330258	NM_152424.3	452	gaa/gGaa																																																																															
ATRX	546	MSKCC	GRCh37	X	76918870	76918870	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	48	203	0	ENST00000373344.5:c.4120+1G>A		p.X1374_splice	ENST00000373344	NM_000489.3	1374																																																																																
ATRX	546	MSKCC	GRCh37	X	76939674	76939674	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	76	291	0	ENST00000373344.5:c.1074del	p.Lys358AsnfsTer2	p.K358Nfs*2	ENST00000373344	NM_000489.3	358	aaA/aa																																																																															
MAD2L2	10459	MSKCC	GRCh37	1	11740429	11740429	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	123	276	0	ENST00000235310.3:c.140A>G	p.Lys47Arg	p.K47R	ENST00000235310		47	aAg/aGg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845904	156845904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	182	422	0	ENST00000524377.1:c.1534C>A	p.Leu512Ile	p.L512I	ENST00000524377	NM_002529.3	512	Ctc/Atc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202951	16202951	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	168	338	0	ENST00000375759.3:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000375759	NM_015001.2	220	tAc/tGc																																																																															
NADK	65220	MSKCC	GRCh37	1	1687773	1687773	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	156	322	0	ENST00000341426.5:c.509A>G	p.Asp170Gly	p.D170G	ENST00000341426	NM_023018.4	170	gAc/gGc																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488752	231488752	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	93	271	0	ENST00000295050.7:c.1115T>G	p.Val372Gly	p.V372G	ENST00000295050	NM_032018.5	372	gTt/gGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107219	27107219	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	123	285	0	ENST00000324856.7:c.6830A>G	p.Asp2277Gly	p.D2277G	ENST00000324856	NM_006015.4	2277	gAt/gGt																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46733229	46733229	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	120	262	0	ENST00000371975.4:c.990T>A	p.Asn330Lys	p.N330K	ENST00000371975	NM_003579.3	330	aaT/aaA																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748137	72748137	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	90	277	0	ENST00000357731.5:c.41A>G	p.Asn14Ser	p.N14S	ENST00000357731	NM_173808.2	14	aAc/aGc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784092	9784092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	156	308	0	ENST00000377346.4:c.2660A>G	p.Tyr887Cys	p.Y887C	ENST00000377346	NM_005026.3	887	tAt/tGt																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112764472	112764472	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	91	228	0	ENST00000369452.4:c.1081A>G	p.Asn361Asp	p.N361D	ENST00000369452	NM_007373.3	361	Aac/Gac																																																																															
CTR9	9646	MSKCC	GRCh37	11	10797080	10797080	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754713644		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	36	253	0	ENST00000361367.2:c.2995C>T	p.Arg999Cys	p.R999C	ENST00000361367	NM_014633.3	999	Cgt/Tgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133253203	133253203	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1292641487		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	118	253	0	ENST00000320574.5:c.838A>G	p.Lys280Glu	p.K280E	ENST00000320574	NM_006231.2	280	Aaa/Gaa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435623	18435623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	70	269	0	ENST00000266497.5:c.608C>A	p.Pro203Gln	p.P203Q	ENST00000266497		203	cCa/cAa																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041050	29041050	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs778479707		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	110	230	0	ENST00000282397.4:c.378A>G	p.Ile126Met	p.I126M	ENST00000282397	NM_002019.4	126	atA/atG																																																																															
DIS3	22894	MSKCC	GRCh37	13	73351587	73351587	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	89	231	1	ENST00000377767.4:c.625G>T	p.Asp209Tyr	p.D209Y	ENST00000377767	NM_014953.3	209	Gat/Tat																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14020446	14020446	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	126	271	0	ENST00000311895.7:c.417A>G	p.Ile139Met	p.I139M	ENST00000311895	NM_005236.2	139	atA/atG																																																																															
TSC2	7249	MSKCC	GRCh37	16	2110807	2110807	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	67	337	0	ENST00000219476.3:c.1112A>C	p.Gln371Pro	p.Q371P	ENST00000219476	NM_000548.3	371	cAg/cCg																																																																															
CDH1	999	MSKCC	GRCh37	16	68844149	68844149	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	116	272	0	ENST00000261769.5:c.737T>C	p.Met246Thr	p.M246T	ENST00000261769	NM_004360.3	246	aTg/aCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831202	72831202	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	158	308	0	ENST00000268489.5:c.5379G>C	p.Gln1793His	p.Q1793H	ENST00000268489	NM_006885.3	1793	caG/caC																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992448	72992448	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	130	348	0	ENST00000268489.5:c.1597T>C	p.Ser533Pro	p.S533P	ENST00000268489	NM_006885.3	533	Tcc/Ccc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347192	89347192	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	167	371	0	ENST00000301030.4:c.5758A>G	p.Thr1920Ala	p.T1920A	ENST00000301030	NM_001256183.1	1920	Acg/Gcg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350487	89350488	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	117	280	0	ENST00000301030.4:c.2462dup	p.Asn821LysfsTer7	p.N821Kfs*7	ENST00000301030	NM_001256183.1	821	aat/aaAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350762	89350762	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	43	279	0	ENST00000301030.4:c.2188A>G	p.Arg730Gly	p.R730G	ENST00000301030	NM_001256183.1	730	Agg/Ggg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351794	89351794	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1376711527		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	143	259	0	ENST00000301030.4:c.1156A>G	p.Met386Val	p.M386V	ENST00000301030	NM_001256183.1	386	Atg/Gtg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17124929	17124929	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	167	319	0	ENST00000285071.4:c.793T>C	p.Cys265Arg	p.C265R	ENST00000285071	NM_144997.5	265	Tgt/Cgt																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38792648	38792648	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	120	246	0	ENST00000348513.6:c.368del	p.Lys123ArgfsTer2	p.K123Rfs*2	ENST00000348513	NM_003079.4	123	aAg/ag																																																																															
STAT3	6774	MSKCC	GRCh37	17	40500405	40500405	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	107	205	0	ENST00000264657.5:c.128+2T>C		p.X43_splice	ENST00000264657	NM_139276.2	43																																																																																
CD79B	974	MSKCC	GRCh37	17	62007674	62007674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	117	316	1	ENST00000392795.3:c.193C>T	p.His65Tyr	p.H65Y	ENST00000392795	NM_001039933.1	65	Cac/Tac																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119036	70119036	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	70	347	0	ENST00000245479.2:c.608T>C	p.Ile203Thr	p.I203T	ENST00000245479	NM_000346.3	203	aTc/aCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7573965	7573965	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	142	255	0	ENST00000269305.4:c.1062G>T	p.Gln354His	p.Q354H	ENST00000269305	NM_001126112.2	354	caG/caT																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2202746	2202746	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	173	248	0	ENST00000398665.3:c.755A>C	p.Gln252Pro	p.Q252P	ENST00000398665	NM_032482.2	252	cAg/cCg																																																																															
CD79A	973	MSKCC	GRCh37	19	42383335	42383335	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	118	310	0	ENST00000221972.3:c.355T>G	p.Cys119Gly	p.C119G	ENST00000221972	NM_021601.3	119	Tgc/Ggc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422504	47422505	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	153	244	0	ENST00000404338.3:c.578dup	p.Pro194AlafsTer8	p.P194Afs*8	ENST00000404338	NM_004491.4	191	aca/acAa																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731455	47731455	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	46	273	0	ENST00000449228.1:c.337T>C	p.Trp113Arg	p.W113R	ENST00000449228	NM_001127240.2	113	Tgg/Cgg																																																																															
BARD1	580	MSKCC	GRCh37	2	215593534	215593534	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	132	280	0	ENST00000260947.4:c.2200A>G	p.Thr734Ala	p.T734A	ENST00000260947	NM_000465.2	734	Aca/Gca																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033499	48033499	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	100	247	0	ENST00000234420.5:c.3801+2T>C		p.X1267_splice	ENST00000234420	NM_000179.2	1267																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40877459	40877459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	53	327	0	ENST00000373198.4:c.2237C>T	p.Ala746Val	p.A746V	ENST00000373198	NM_133170.3	746	gCc/gTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100908	41100908	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	90	297	0	ENST00000373198.4:c.1448A>G	p.Asp483Gly	p.D483G	ENST00000373198	NM_133170.3	483	gAc/gGc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561393	9561394	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	185	275	0	ENST00000353224.5:c.388dup	p.Gln130ProfsTer11	p.Q130Pfs*11	ENST00000353224	NM_177990.2	130	cag/cCag																																																																															
EP300	2033	MSKCC	GRCh37	22	41513538	41513538	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs764079704		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	175	333	0	ENST00000263253.7:c.442A>G	p.Thr148Ala	p.T148A	ENST00000263253	NM_001429.3	148	Acg/Gcg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713757	30713757	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	207	351	0	ENST00000359013.4:c.1157T>G	p.Leu386Arg	p.L386R	ENST00000359013	NM_001024847.2	386	cTc/cGc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125424	47125424	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	154	295	0	ENST00000409792.3:c.5846T>C	p.Leu1949Pro	p.L1949P	ENST00000409792	NM_014159.6	1949	cTa/cCa																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73112900	73112900	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	98	185	0	ENST00000356692.5:c.494+2T>C		p.X165_splice	ENST00000356692		165																																																																																
FAT1	2195	MSKCC	GRCh37	4	187629692	187629692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	151	326	0	ENST00000441802.2:c.1290G>T	p.Gln430His	p.Q430H	ENST00000441802	NM_005245.3	430	caG/caT																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980558	1980559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCC			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	41	382	0	ENST00000382895.3:c.4025_4028dup	p.Glu1344ProfsTer92	p.E1344Pfs*92	ENST00000382895	NM_133330.2	1340	-/CCCC																																																																															
APC	324	MSKCC	GRCh37	5	112173535	112173536	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	104	262	0	ENST00000257430.4:c.2246dup	p.Leu749PhefsTer7	p.L749Ffs*7	ENST00000257430	NM_000038.5	748	-/T																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31464344	31464344	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	38	209	0	ENST00000344624.3:c.2573A>G	p.Gln858Arg	p.Q858R	ENST00000344624		858	cAg/cGg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522531	67522531	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	92	213	0	ENST00000274335.5:c.28G>T	p.Ala10Ser	p.A10S	ENST00000274335		10	Gcg/Tcg																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271491	26271491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	58	392	1	ENST00000305910.3:c.122G>A	p.Arg41His	p.R41H	ENST00000305910	NM_003534.2	41	cGc/cAc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680880	30680880	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	37	321	0	ENST00000376406.3:c.839A>T	p.Asn280Ile	p.N280I	ENST00000376406	NM_014641.2	280	aAt/aTt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324015	31324015	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs41557117		P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	31	43	0	ENST00000412585.2:c.548A>G	p.Tyr183Cys	p.Y183C	ENST00000412585	NM_005514.6	183	tAc/tGc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798448	32798448	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	203	330	0	ENST00000374899.4:c.1408T>C	p.Phe470Leu	p.F470L	ENST00000374899	NM_018833.2	470	Ttc/Ctc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288941	33288941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	47	333	0	ENST00000374542.5:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000374542	NM_001141970.1	204	cGg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860425	151860425	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	117	342	0	ENST00000262189.6:c.10237A>G	p.Ile3413Val	p.I3413V	ENST00000262189	NM_170606.2	3413	Atc/Gtc																																																																															
CDK6	1021	MSKCC	GRCh37	7	92462601	92462601	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	98	223	1	ENST00000265734.4:c.37T>C	p.Tyr13His	p.Y13H	ENST00000265734	NM_001259.6	13	Tac/Cac																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38153405	38153405	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	118	256	0	ENST00000317025.8:c.2824A>G	p.Met942Val	p.M942V	ENST00000317025	NM_023034.1	942	Atg/Gtg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248105	110248105	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	146	241	0	ENST00000374672.4:c.1367T>C	p.Phe456Ser	p.F456S	ENST00000374672	NM_004235.4	456	tTc/tCc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401073	139401073	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	38	326	0	ENST00000277541.6:c.3920T>C	p.Val1307Ala	p.V1307A	ENST00000277541	NM_017617.3	1307	gTc/gCc																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006219	22006219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	162	364	0	ENST00000276925.6:c.184G>A	p.Ala62Thr	p.A62T	ENST00000276925	NM_004936.3	62	Gcg/Acg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8331735	8331735	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	109	253	0	ENST00000356435.5:c.5381A>G	p.Asp1794Gly	p.D1794G	ENST00000356435		1794	gAc/gGc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44919280	44919280	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			107	22	90	0	ENST00000377967.4:c.1208A>G	p.Asn403Ser	p.N403S	ENST00000377967	NM_021140.2	403	aAc/aGc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48649527	48649527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	87	303	0	ENST00000376670.3:c.11C>A	p.Pro4His	p.P4H	ENST00000376670	NM_002049.3	4	cCt/cAt																																																																															
ATRX	546	MSKCC	GRCh37	X	76763972	76763972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	90	279	0	ENST00000373344.5:c.7336A>G	p.Met2446Val	p.M2446V	ENST00000373344	NM_000489.3	2446	Atg/Gtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0078031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	63	227	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0078037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	78	177	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900080	151900081	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0078037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	201	217	0	ENST00000262189.6:c.4030dup	p.Ile1344AsnfsTer11	p.I1344Nfs*11	ENST00000262189	NM_170606.2	1344	ata/aAta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0078037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	68	199	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175595	112175596	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0078037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	106	314	0	ENST00000257430.4:c.4305_4306insTA	p.Ser1436Ter	p.S1436*	ENST00000257430	NM_000038.5	1435	aga/agATa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157511317	157511334	+	inframe_deletion	In_Frame_Del	DEL	AAGGACCCCTTTGGGGGA	AAGGACCCCTTTGGGGGA	-			P-0078037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	72	283	0	ENST00000346085.5:c.3836_3853del	p.Lys1279_Gly1284del	p.K1279_G1284del	ENST00000346085	NM_020732.3	1279	AAGGACCCCTTTGGGGGA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578417	7578418	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCCG			P-0078037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	173	317	0	ENST00000269305.4:c.509_512dup	p.Glu171AspfsTer11	p.E171Dfs*11	ENST00000269305	NM_001126112.2	171	gag/gaCGGAg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0078038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	46	175	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288456	15288456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	62	274	0	ENST00000263388.2:c.4283G>A	p.Cys1428Tyr	p.C1428Y	ENST00000263388	NM_000435.2	1428	tGc/tAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0078038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	74	209	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489800	40489800	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1356637796		P-0078038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	38	366	1	ENST00000264657.5:c.626C>T	p.Ala209Val	p.A209V	ENST00000264657	NM_139276.2	209	gCg/gTg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123229250	123229250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1317142770		P-0078038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	23	165	0	ENST00000218089.9:c.3734C>T	p.Thr1245Ile	p.T1245I	ENST00000218089	NM_001042749.1	1245	aCa/aTa																																																																															
TET1	80312	MSKCC	GRCh37	10	70405544	70405544	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0078038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	91	367	0	ENST00000373644.4:c.3058A>C	p.Ser1020Arg	p.S1020R	ENST00000373644	NM_030625.2	1020	Agt/Cgt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096193	178096193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	49	411	0	ENST00000397062.3:c.1138G>A	p.Glu380Lys	p.E380K	ENST00000397062	NM_006164.4	380	Gag/Aag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039666	47039666	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	88	197	0	ENST00000329236.7:c.884A>T	p.Asp295Val	p.D295V	ENST00000329236	NM_001204466.1	295	gAc/gTc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287833	33287833	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0078038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	100	429	0	ENST00000374542.5:c.1420C>T	p.Gln474Ter	p.Q474*	ENST00000374542	NM_001141970.1	474	Cag/Tag																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729451	41729451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	88	370	0	ENST00000242208.4:c.1078G>T	p.Gly360Cys	p.G360C	ENST00000242208	NM_002192.2	360	Ggc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445068	49445068	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0078039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	357	402	0	ENST00000301067.7:c.2398C>T	p.Gln800Ter	p.Q800*	ENST00000301067	NM_003482.3	800	Cag/Tag																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761283	59761283	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776002434		P-0078039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	212	323	0	ENST00000259008.2:c.3124G>A	p.Glu1042Lys	p.E1042K	ENST00000259008	NM_032043.2	1042	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0078039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	214	376	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
ALK	238	MSKCC	GRCh37	2	30142933	30142933	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1275464904		P-0078039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	174	348	0	ENST00000389048.3:c.593T>A	p.Val198Glu	p.V198E	ENST00000389048	NM_004304.4	198	gTg/gAg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485418	57485418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	212	285	0	ENST00000371085.3:c.1000G>A	p.Val334Met	p.V334M	ENST00000371085	NM_000516.4	334	Gtg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0078045-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	52	328	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044455	47044456	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0078045-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	38	312	0	ENST00000329236.7:c.1718_1719del	p.Ile573SerfsTer21	p.I573Sfs*21	ENST00000329236	NM_001204466.1	573	aTT/a																																																																															
MAX	4149	MSKCC	GRCh37	14	65569056	65569056	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0078045-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	23	264	0	ENST00000358664.4:c.2T>C	p.Met1?	p.M1?	ENST00000358664	NM_002382.4	1	aTg/aCg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078046-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	54	394	0	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0078046-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	95	211	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
CBL	867	MSKCC	GRCh37	11	119169138	119169138	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0078046-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	66	414	0	ENST00000264033.4:c.2322T>G	p.Tyr774Ter	p.Y774*	ENST00000264033	NM_005188.3	774	taT/taG																																																																															
NUP93	9688	MSKCC	GRCh37	16	56865810	56865810	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078046-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	45	299	0	ENST00000308159.5:c.1142A>T	p.Asn381Ile	p.N381I	ENST00000308159	NM_014669.4	381	aAc/aTc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86686656	86686656	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	74	258	0	ENST00000274376.6:c.3100C>T	p.Gln1034Ter	p.Q1034*	ENST00000274376	NM_002890.2	1034	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0078048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	69	168	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578527	7578529	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0078048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	67	338	0	ENST00000269305.4:c.401_403del	p.Phe134del	p.F134del	ENST00000269305	NM_001126112.2	134	tTTTgc/tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0078050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	47	378	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944965	31944965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	62	618	0	ENST00000340398.3:c.136G>A	p.Val46Met	p.V46M	ENST00000340398	NM_001013699.2	46	Gtg/Atg																																																																															
ALB	213	MSKCC	GRCh37	4	74282071	74282071	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs779988470		P-0078050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	44	360	0	ENST00000295897.4:c.1289+1G>A		p.X430_splice	ENST00000295897	NM_000477.5	430																																																																																
TP63	8626	MSKCC	GRCh37	3	189586463	189586463	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	40	600	0	ENST00000264731.3:c.1087C>T	p.Gln363Ter	p.Q363*	ENST00000264731	NM_003722.4	363	Caa/Taa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038888	12038888	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	50	566	0	ENST00000396373.4:c.1181T>C	p.Met394Thr	p.M394T	ENST00000396373	NM_001987.4	394	aTg/aCg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368219	45368233	+	inframe_deletion	In_Frame_Del	DEL	CACTGAAGGGGATCC	CACTGAAGGGGATCC	-			P-0078050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	76	564	0	ENST00000262160.6:c.1369_1383del	p.Gly457_Val461del	p.G457_V461del	ENST00000262160	NM_005901.5	457	GGATCCCCTTCAGTG/-																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482870	67482871	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0078050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	79	620	0	ENST00000327367.4:c.1276dup	p.Ter426LeufsTer62	p.*426Lfs*62	ENST00000327367	NM_005902.3	425	tct/tcTt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41258527	41258527	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1438140067		P-0078050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	34	408	0	ENST00000357654.3:c.158A>G	p.Asn53Ser	p.N53S	ENST00000357654	NM_007294.3	53	aAc/aGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0078051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			78	25	278	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0078051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			41	10	220	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	42	504	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0078051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	107	565	0	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030221	180030221	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143739828		P-0078051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	80	586	0	ENST00000261937.6:c.4063G>A	p.Val1355Met	p.V1355M	ENST00000261937	NM_182925.4	1355	Gtg/Atg																																																																															
ERG	2078	MSKCC	GRCh37	21	39755704	39755704	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1404777513		P-0078051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	8	528	0	ENST00000288319.7:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000288319	NM_182918.3	354	cGg/cAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139408993	139408993	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746313097		P-0078051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	63	570	0	ENST00000277541.6:c.2176G>A	p.Val726Ile	p.V726I	ENST00000277541	NM_017617.3	726	Gtc/Atc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441470	52441470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	60	627	0	ENST00000460680.1:c.382G>A	p.Gly128Arg	p.G128R	ENST00000460680	NM_004656.3	128	Gga/Aga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0078051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	37	352	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445749	29445749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	43	524	0	ENST00000544604.2:c.1580C>A	p.Ser527Tyr	p.S527Y	ENST00000544604	NM_001206998.1	527	tCc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112173866	112173866	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	35	477	0	ENST00000257430.4:c.2576del	p.Gly859ValfsTer2	p.G859Vfs*2	ENST00000257430	NM_000038.5	859	Ggt/gt																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594775	47594775	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1417352720		P-0078051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	61	720	1	ENST00000395288.2:c.1264C>T	p.Arg422Cys	p.R422C	ENST00000395288	NM_016506.5	422	Cgc/Tgc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281600	49281600	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751642704		P-0078051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	12	544	0	ENST00000282018.3:c.647C>T	p.Thr216Ile	p.T216I	ENST00000282018	NM_020377.2	216	aCa/aTa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001173	150001173	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	10	520	0	ENST00000253339.5:c.2431G>T	p.Glu811Ter	p.E811*	ENST00000253339		811	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0078063-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	252	250	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082749	16082749	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0078063-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	26	198	1	ENST00000281043.3:c.563A>C	p.Asp188Ala	p.D188A	ENST00000281043	NM_005378.4	188	gAt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0078080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	235	228	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
TEK	7010	MSKCC	GRCh37	9	27169490	27169490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	91	237	0	ENST00000380036.4:c.491C>A	p.Ser164Ter	p.S164*	ENST00000380036	NM_000459.3	164	tCa/tAa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87636241	87636242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0078080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	41	237	0	ENST00000277120.3:c.2407dup	p.Leu803ProfsTer57	p.L803Pfs*57	ENST00000277120		802	-/C																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078083-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	130	319	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	T			P-0078083-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	119	320	0	ENST00000558401.1:c.1A>T	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Ttg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128246746	128246746	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0078083-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	138	297	0	ENST00000265960.3:c.1183C>T	p.Arg395Ter	p.R395*	ENST00000265960	NM_001006617.1	395	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0078083-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	78	204	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478785	56478785	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078083-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	127	231	0	ENST00000267101.3:c.241C>G	p.Arg81Gly	p.R81G	ENST00000267101	NM_001982.3	81	Cga/Gga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288966	212288966	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514262		P-0078083-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	88	269	0	ENST00000342788.4:c.2780G>A	p.Arg927Gln	p.R927Q	ENST00000342788	NM_005235.2	927	cGa/cAa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703680	47703680	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078083-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	109	315	0	ENST00000233146.2:c.2180C>G	p.Ala727Gly	p.A727G	ENST00000233146	NM_000251.2	727	gCt/gGt																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29115457	29115461	+	frameshift_variant	Frame_Shift_Del	DEL	ATCAA	ATCAA	-			P-0078083-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	87	193	0	ENST00000328354.6:c.605_609del	p.Phe202SerfsTer5	p.F202Sfs*5	ENST00000328354	NM_007194.3	202	tTTGAT/t																																																																															
NF1	4763	MSKCC	GRCh37	17	29684342	29684342	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0078083-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	127	281	0	ENST00000358273.4:c.7925A>C	p.Tyr2642Ser	p.Y2642S	ENST00000358273	NM_001042492.2	2642	tAc/tCc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214634	36214635	+	frameshift_variant	Frame_Shift_Ins	INS	CC	CC	GCT			P-0078083-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	114	359	0	ENST00000222270.7:c.3060_3061delinsGCT	p.Arg1021LeufsTer14	p.R1021Lfs*14	ENST00000222270	NM_014727.1	1020	ggCCgg/ggGCTgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0078086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	23	149	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0078086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	85	236	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	179	337	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	71	313	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	94	252	0	ENST00000269305.4:c.1045del	p.Glu349AsnfsTer21	p.E349Nfs*21	ENST00000269305	NM_001126112.2	349	Gaa/aa																																																																															
LMO1	4004	MSKCC	GRCh37	11	8251854	8251854	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs753080445		P-0078086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	104	337	0	ENST00000335790.3:c.223C>T	p.Arg75Ter	p.R75*	ENST00000335790	NM_002315.2	75	Cga/Tga																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874223	155874223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	81	269	2	ENST00000368323.3:c.308C>T	p.Thr103Met	p.T103M	ENST00000368323	NM_006912.5	103	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0078086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	76	210	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40979299	40979299	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	79	274	0	ENST00000373198.4:c.1834A>C	p.Lys612Gln	p.K612Q	ENST00000373198	NM_133170.3	612	Aaa/Caa																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33680923	33680923	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0078086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	22	185	0	ENST00000308377.4:c.1354C>T	p.Gln452Ter	p.Q452*	ENST00000308377	NM_152270.3	452	Cag/Tag																																																																															
KDR	3791	MSKCC	GRCh37	4	55981564	55981564	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0078086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	34	211	0	ENST00000263923.4:c.373T>G	p.Phe125Val	p.F125V	ENST00000263923	NM_002253.2	125	Ttt/Gtt																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4090618	4090618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	58	247	0	ENST00000262948.5:c.1181C>T	p.Thr394Ile	p.T394I	ENST00000262948	NM_030662.3	394	aCa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0078087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	183	253	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866352	42866352	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	271	371	0	ENST00000398585.3:c.280C>G	p.Leu94Val	p.L94V	ENST00000398585	NM_001135099.1	94	Ctg/Gtg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866400	42866400	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	272	390	0	ENST00000398585.3:c.232C>G	p.Pro78Ala	p.P78A	ENST00000398585	NM_001135099.1	78	Ccg/Gcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0078097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	258	337	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0078097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	8	233	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0078097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	105	259	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	126	293	0	ENST00000269305.4:c.379T>C	p.Ser127Pro	p.S127P	ENST00000269305	NM_001126112.2	127	Tcc/Ccc																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	82	283	0	ENST00000257430.4:c.4469del	p.His1490LeufsTer17	p.H1490Lfs*17	ENST00000257430	NM_000038.5	1490	cAt/ct																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39305244	39305244	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770232749		P-0078097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	76	264	0	ENST00000373001.3:c.1181C>T	p.Thr394Met	p.T394M	ENST00000373001	NM_022157.3	394	aCg/aTg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47440618	47440618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	40	232	0	ENST00000404338.3:c.3779C>T	p.Pro1260Leu	p.P1260L	ENST00000404338	NM_004491.4	1260	cCg/cTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660112	227660112	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	60	336	1	ENST00000305123.5:c.3343A>G	p.Asn1115Asp	p.N1115D	ENST00000305123	NM_005544.2	1115	Aac/Gac																																																																															
POLE	5426	MSKCC	GRCh37	12	133252086	133252086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778572159		P-0078104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	69	185	0	ENST00000320574.5:c.1124G>A	p.Arg375Gln	p.R375Q	ENST00000320574	NM_006231.2	375	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0078104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	81	215	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0078104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	101	195	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39570492	39570492	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	54	135	0	ENST00000262039.4:c.688G>T	p.Glu230Ter	p.E230*	ENST00000262039	NM_002647.2	230	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0078104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	49	168	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0078104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	110	173	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0078106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	162	314	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0078106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			56	41	124	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879885	37879885	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	186	366	0	ENST00000269571.5:c.2180G>C	p.Gly727Ala	p.G727A	ENST00000269571		727	gGa/gCa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526675	31526675	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs999494986		P-0078106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	142	274	0	ENST00000344624.3:c.365C>T	p.Pro122Leu	p.P122L	ENST00000344624		122	cCa/cTa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23634429	23634429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	120	246	0	ENST00000261584.4:c.2857G>A	p.Asp953Asn	p.D953N	ENST00000261584	NM_024675.3	953	Gat/Aat																																																																															
ATM	472	MSKCC	GRCh37	11	108155102	108155102	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	75	277	0	ENST00000278616.4:c.3895G>C	p.Ala1299Pro	p.A1299P	ENST00000278616	NM_000051.3	1299	Gcc/Ccc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123205099	123205099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	34	223	0	ENST00000218089.9:c.2459C>T	p.Ser820Leu	p.S820L	ENST00000218089	NM_001042749.1	820	tCa/tTa																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271447	26271447	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1453083205		P-0078106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	258	418	0	ENST00000305910.3:c.166C>T	p.Gln56Ter	p.Q56*	ENST00000305910	NM_003534.2	56	Cag/Tag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177053	56177053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	89	251	0	ENST00000399503.3:c.2323C>A	p.His775Asn	p.H775N	ENST00000399503	NM_005921.1	775	Cat/Aat																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7980338	7980338	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	172	328	0	ENST00000319144.4:c.1245G>T	p.Arg415Ser	p.R415S	ENST00000319144	NM_001139.2	415	agG/agT																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097643	8097643	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	145	227	0	ENST00000346208.3:c.25C>G	p.Arg9Gly	p.R9G	ENST00000346208		9	Cgc/Ggc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100718	8100718	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	211	315	0	ENST00000346208.3:c.692C>G	p.Ser231Cys	p.S231C	ENST00000346208		231	tCc/tGc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367816	15367816	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs778756099		P-0078106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	122	221	0	ENST00000263377.2:c.1510G>C	p.Glu504Gln	p.E504Q	ENST00000263377	NM_058243.2	504	Gag/Cag																																																																															
ATR	545	MSKCC	GRCh37	3	142281678	142281678	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1259904264		P-0078106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	62	276	0	ENST00000350721.4:c.566T>C	p.Leu189Ser	p.L189S	ENST00000350721	NM_001184.3	189	tTa/tCa																																																																															
BRAF	673	MSKCC	GRCh37	7	140487350	140487350	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0078106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	165	328	0	ENST00000288602.6:c.1175G>C	p.Gly392Ala	p.G392A	ENST00000288602	NM_004333.4	392	gGa/gCa																																																																															
NF1	4763	MSKCC	GRCh37	17	29559192	29559192	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0078106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			55	82	203	0	ENST00000358273.4:c.3299C>G	p.Ser1100Ter	p.S1100*	ENST00000358273	NM_001042492.2	1100	tCa/tGa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197742	123197742	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	69	225	0	ENST00000218089.9:c.1866G>C	p.Lys622Asn	p.K622N	ENST00000218089	NM_001042749.1	622	aaG/aaC																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100297	8100297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	168	366	0	ENST00000346208.3:c.271C>A	p.His91Asn	p.H91N	ENST00000346208		91	Cat/Aat																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152860020	152860020	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	155	266	0	ENST00000406277.2:c.408C>G	p.Phe136Leu	p.F136L	ENST00000406277	NM_152274.4	136	ttC/ttG																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59858220	59858220	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	108	251	0	ENST00000259008.2:c.1775G>A	p.Trp592Ter	p.W592*	ENST00000259008	NM_032043.2	592	tGg/tAg																																																																															
ATM	472	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782292		P-0078116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	250	364	0	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0078116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	283	272	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0078116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	88	362	0				ENST00000310581	NM_198253.2																																																																																	
EGFR	1956	MSKCC	GRCh37	7	55249020	55249022	+	missense_variant	Missense_Mutation	ONP	ACG	ACG	GCA			P-0078116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1012	103	351	0	ENST00000275493.2:c.2318_2320delinsGCA	p.His773_Val774delinsArgMet	p.H773_V774delinsRM	ENST00000275493	NM_005228.3	773	cACGtg/cGCAtg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37673694	37673694	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0078116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	86	283	0	ENST00000447079.4:c.2848C>G	p.Arg950Gly	p.R950G	ENST00000447079	NM_015083.1	950	Cga/Gga																																																																															
APC	324	MSKCC	GRCh37	5	112173299	112173299	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0078119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	68	258	0	ENST00000257430.4:c.2008A>T	p.Lys670Ter	p.K670*	ENST00000257430	NM_000038.5	670	Aaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0078119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	27	194	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CBL	867	MSKCC	GRCh37	11	119148486	119148486	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs765471101		P-0078119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	74	217	0	ENST00000264033.4:c.1027C>T	p.Arg343Ter	p.R343*	ENST00000264033	NM_005188.3	343	Cga/Tga																																																																															
JUN	3725	MSKCC	GRCh37	1	59248551	59248561	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCGAGGTGA	GGGCGAGGTGA	-			P-0078119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	52	397	0	ENST00000371222.2:c.182_192del	p.Leu61ArgfsTer42	p.L61Rfs*42	ENST00000371222	NM_002228.3	61	cTCACCTCGCCC/c																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0078136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	32	217	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431082	49431082	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0078136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	42	415	0	ENST00000301067.7:c.10057C>T	p.Gln3353Ter	p.Q3353*	ENST00000301067	NM_003482.3	3353	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7572971	7572971	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	30	290	0	ENST00000269305.4:c.1138del	p.His380IlefsTer42	p.H380Ifs*42	ENST00000269305	NM_001126112.2	380	Cat/at																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841298	15841298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	37	230	0	ENST00000307771.7:c.1382C>T	p.Ser461Phe	p.S461F	ENST00000307771	NM_005089.3	461	tCc/tTc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098943	178098944	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGACTTA			P-0078136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	15	251	0	ENST00000397062.3:c.95_101dup	p.Glu35LysfsTer6	p.E35Kfs*6	ENST00000397062	NM_006164.4	34	cga/cgTAAGTCGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0078137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	142	466	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0078137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	93	450	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0078137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	9	314	0	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1294917	1294917	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1336720402		P-0078137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	66	368	0	ENST00000310581.5:c.188G>A	p.Arg63Gln	p.R63Q	ENST00000310581	NM_198253.2	63	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0078137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	76	229	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230435	46230435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	40	396	0	ENST00000334344.6:c.769C>T	p.His257Tyr	p.H257Y	ENST00000334344	NM_152641.2	257	Cat/Tat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087874	27087874	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0078137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	72	339	0	ENST00000324856.7:c.2162-1G>A		p.X721_splice	ENST00000324856	NM_006015.4	721																																																																																
CDC73	79577	MSKCC	GRCh37	1	193117012	193117012	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1250821112		P-0078137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	76	252	0	ENST00000367435.3:c.745A>G	p.Ile249Val	p.I249V	ENST00000367435	NM_024529.4	249	Att/Gtt																																																																															
CTR9	9646	MSKCC	GRCh37	11	10783537	10783537	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	55	320	0	ENST00000361367.2:c.785A>G	p.Tyr262Cys	p.Y262C	ENST00000361367	NM_014633.3	262	tAt/tGt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939426	71939426	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	49	533	0	ENST00000298229.2:c.281C>A	p.Thr94Asn	p.T94N	ENST00000298229	NM_001567.3	94	aCc/aAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69058458	69058458	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	62	233	0	ENST00000288368.4:c.4102T>C	p.Tyr1368His	p.Y1368H	ENST00000288368	NM_024870.2	1368	Tat/Cat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0078145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	45	362	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524104	187524104	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078145-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	43	290	0	ENST00000441802.2:c.11435A>G	p.Glu3812Gly	p.E3812G	ENST00000441802	NM_005245.3	3812	gAg/gGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0078152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	101	150	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
IGF1	3479	MSKCC	GRCh37	12	102869552	102869552	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766508915		P-0078152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	190	288	0	ENST00000307046.8:c.89C>T	p.Ser30Leu	p.S30L	ENST00000307046	NM_001111285.1	30	tCg/tTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68772202	68772203	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0078152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	127	244	0	ENST00000261769.5:c.52dup	p.Ser18PhefsTer16	p.S18Ffs*16	ENST00000261769	NM_004360.3	17	-/T																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165141	47165141	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372869995		P-0078152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	258	212	0	ENST00000409792.3:c.985C>T	p.Arg329Trp	p.R329W	ENST00000409792	NM_014159.6	329	Cgg/Tgg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246350	46246350	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	230	324	0	ENST00000334344.6:c.4444C>G	p.Gln1482Glu	p.Q1482E	ENST00000334344	NM_152641.2	1482	Caa/Gaa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37083760	37083760	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs63751244		P-0078152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	207	174	0	ENST00000231790.2:c.1669G>A	p.Glu557Lys	p.E557K	ENST00000231790	NM_000249.3	557	Gaa/Aaa																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186501416	186501416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	143	205	0	ENST00000323963.5:c.17C>T	p.Ala6Val	p.A6V	ENST00000323963		6	gCg/gTg																																																																															
ARAF	369	MSKCC	GRCh37	X	47429057	47429057	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0078152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	183	348	0	ENST00000377045.4:c.1419+1G>C		p.X473_splice	ENST00000377045	NM_001654.4	473																																																																																
ARID2	196528	MSKCC	GRCh37	12	46246372	46246372	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0078152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	232	332	0	ENST00000334344.6:c.4466C>G	p.Ser1489Ter	p.S1489*	ENST00000334344	NM_152641.2	1489	tCa/tGa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2120502	2120502	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			661	285	321	0	ENST00000219476.3:c.1762G>T	p.Glu588Ter	p.E588*	ENST00000219476	NM_000548.3	588	Gag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0078153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	476	320	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs121913468		P-0078153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	485	295	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0078153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	64	260	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468021	50468021	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	28	385	0	ENST00000331340.3:c.1259del	p.Pro420ArgfsTer40	p.P420Rfs*40	ENST00000331340	NM_006060.4	419	gCc/gc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877899	151877899	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	117	295	0	ENST00000262189.6:c.7046T>A	p.Phe2349Tyr	p.F2349Y	ENST00000262189	NM_170606.2	2349	tTc/tAc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43699748	43699748	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	85	359	0	ENST00000382044.4:c.5767G>C	p.Asp1923His	p.D1923H	ENST00000382044	NM_001141980.1	1923	Gat/Cat																																																																															
KLF5	688	MSKCC	GRCh37	13	73649905	73649905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	94	264	0	ENST00000377687.4:c.1255G>A	p.Glu419Lys	p.E419K	ENST00000377687	NM_001730.3	419	Gag/Aag																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46603879	46603879	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1199645574		P-0078153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	54	317	0	ENST00000263734.3:c.1236C>G	p.Ile412Met	p.I412M	ENST00000263734	NM_001430.4	412	atC/atG																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629788	187629788	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	108	340	0	ENST00000441802.2:c.1194G>C	p.Leu398Phe	p.L398F	ENST00000441802	NM_005245.3	398	ttG/ttC																																																																															
REL	5966	MSKCC	GRCh37	2	61145369	61145369	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	121	232	0	ENST00000295025.8:c.579G>T	p.Lys193Asn	p.K193N	ENST00000295025	NM_002908.2	193	aaG/aaT																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073850	8073850	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	117	348	0	ENST00000377482.5:c.809A>C	p.His270Pro	p.H270P	ENST00000377482	NM_018948.3	270	cAc/cCc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21344803	21344803	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1272024102		P-0078153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	80	297	0	ENST00000215739.8:c.780C>G	p.Phe260Leu	p.F260L	ENST00000215739	NM_006767.3	260	ttC/ttG																																																																															
JUN	3725	MSKCC	GRCh37	1	59248722	59248723	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GTTTCAT			P-0078153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	124	295	0	ENST00000371222.2:c.20_21insATGAAAC	p.Thr8Ter	p.T8*	ENST00000371222	NM_002228.3	7	acg/acATGAAACg																																																																															
JUN	3725	MSKCC	GRCh37	1	59248736	59248736	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	115	281	0	ENST00000371222.2:c.7G>C	p.Ala3Pro	p.A3P	ENST00000371222	NM_002228.3	3	Gca/Cca																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330562	65330562	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	140	266	1	ENST00000342505.4:c.1084G>T	p.Glu362Ter	p.E362*	ENST00000342505	NM_002227.2	362	Gag/Tag																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874206	155874206	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	98	281	0	ENST00000368323.3:c.325C>A	p.His109Asn	p.H109N	ENST00000368323	NM_006912.5	109	Cat/Aat																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72058638	72058638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	140	234	0	ENST00000357731.5:c.802C>A	p.Gln268Lys	p.Q268K	ENST00000357731	NM_173808.2	268	Caa/Aaa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244946	46244946	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	72	387	0	ENST00000334344.6:c.3040C>T	p.Gln1014Ter	p.Q1014*	ENST00000334344	NM_152641.2	1014	Cag/Tag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99459360	99459360	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	108	199	0	ENST00000268035.6:c.1996G>T	p.Asp666Tyr	p.D666Y	ENST00000268035	NM_000875.3	666	Gac/Tac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943670	9943670	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs375260513		P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	146	322	0	ENST00000330684.3:c.1271C>A	p.Pro424His	p.P424H	ENST00000330684	NM_001134407.1	424	cCc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577100	7577101	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	150	297	0	ENST00000269305.4:c.837dup	p.Arg280GlufsTer26	p.R280Efs*26	ENST00000269305	NM_001126112.2	279	-/G																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145701	11145701	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	650	313	0	ENST00000344626.4:c.4063G>T	p.Glu1355Ter	p.E1355*	ENST00000344626	NM_003072.3	1355	Gag/Tag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212495243	212495243	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	91	264	0	ENST00000342788.4:c.2023G>T	p.Val675Phe	p.V675F	ENST00000342788	NM_005235.2	675	Gtt/Ttt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520248	9520248	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			94	189	267	0	ENST00000353224.5:c.2021G>C	p.Arg674Pro	p.R674P	ENST00000353224	NM_177990.2	674	cGg/cCg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561250	9561250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	170	301	0	ENST00000353224.5:c.532G>T	p.Gly178Trp	p.G178W	ENST00000353224	NM_177990.2	178	Ggg/Tgg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505304	186505304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	60	216	0	ENST00000323963.5:c.930G>T	p.Lys310Asn	p.K310N	ENST00000323963		310	aaG/aaT																																																																															
TET2	54790	MSKCC	GRCh37	4	106155929	106155929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	129	352	0	ENST00000380013.4:c.830C>T	p.Ala277Val	p.A277V	ENST00000380013	NM_001127208.2	277	gCa/gTa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007302	143007302	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	23	166	0	ENST00000262992.4:c.2482G>T	p.Ala828Ser	p.A828S	ENST00000262992	NM_001101669.1	828	Gca/Tca																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201737	66201737	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	118	238	0	ENST00000273854.3:c.2765G>T	p.Arg922Met	p.R922M	ENST00000273854	NM_004439.5	922	aGg/aTg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876343	35876343	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200570812		P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	328	298	0	ENST00000303115.3:c.1135G>A	p.Ala379Thr	p.A379T	ENST00000303115	NM_002185.3	379	Gcc/Acc																																																																															
AR	367	MSKCC	GRCh37	X	66766409	66766409	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			43	68	88	0	ENST00000374690.3:c.1421A>T	p.Glu474Val	p.E474V	ENST00000374690	NM_000044.3	474	gAg/gTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464945	120464946	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	188	300	0	ENST00000256646.2:c.5126_5127delinsAT	p.Leu1709His	p.L1709H	ENST00000256646	NM_024408.3	1709	cTC/cAT																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262408	16262408	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	145	301	0	ENST00000375759.3:c.9673G>T	p.Ala3225Ser	p.A3225S	ENST00000375759	NM_015001.2	3225	Gcc/Tcc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163318764	163318764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	47	245	0	ENST00000271452.3:c.1154G>A	p.Gly385Asp	p.G385D	ENST00000271452	NM_145697.2	385	gGt/gAt																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230561385	230561385	+	5_prime_UTR_variant	5'UTR	SNP	G	G	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	177	458	0	ENST00000391860.1:c.-56C>A		p.*19*	ENST00000391860	NM_001258311.1																																																																																	
FUBP1	8880	MSKCC	GRCh37	1	78425914	78425914	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	114	327	0	ENST00000370768.2:c.1531G>T	p.Gly511Ter	p.G511*	ENST00000370768	NM_003902.3	511	Gga/Tga																																																																															
RET	5979	MSKCC	GRCh37	10	43596110	43596110	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	155	288	0	ENST00000355710.3:c.277G>C	p.Gly93Arg	p.G93R	ENST00000355710	NM_020975.4	93	Ggc/Cgc																																																																															
TET1	80312	MSKCC	GRCh37	10	70405866	70405866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	35	278	0	ENST00000373644.4:c.3380C>T	p.Pro1127Leu	p.P1127L	ENST00000373644	NM_030625.2	1127	cCa/cTa																																																																															
CTR9	9646	MSKCC	GRCh37	11	10778365	10778365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	47	160	0	ENST00000361367.2:c.572G>T	p.Arg191Leu	p.R191L	ENST00000361367	NM_014633.3	191	cGt/cTt																																																																															
ATM	472	MSKCC	GRCh37	11	108128264	108128264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	99	178	0	ENST00000278616.4:c.2307G>T	p.Glu769Asp	p.E769D	ENST00000278616	NM_000051.3	769	gaG/gaT																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435544	18435544	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	70	278	0	ENST00000266497.5:c.529C>A	p.Pro177Thr	p.P177T	ENST00000266497		177	Cca/Aca																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18534777	18534777	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	99	234	0	ENST00000266497.5:c.1835T>A	p.Val612Glu	p.V612E	ENST00000266497		612	gTg/gAg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244094	46244094	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	162	269	0	ENST00000334344.6:c.2188G>T	p.Val730Phe	p.V730F	ENST00000334344	NM_152641.2	730	Gtt/Ttt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424968	49424968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	278	317	0	ENST00000301067.7:c.13520G>T	p.Ser4507Ile	p.S4507I	ENST00000301067	NM_003482.3	4507	aGc/aTc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907455	32907455	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	88	240	0	ENST00000380152.3:c.1840A>T	p.Ile614Phe	p.I614F	ENST00000380152		614	Att/Ttt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610045	81610045	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	118	366	0	ENST00000298171.2:c.1643G>C	p.Cys548Ser	p.C548S	ENST00000298171	NM_000369.2	548	tGc/tCc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14026065	14026066	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	58	269	0	ENST00000311895.7:c.1025_1026delinsTT	p.Arg342Ile	p.R342I	ENST00000311895	NM_005236.2	342	aGG/aTT																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641107	3641107	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	97	306	0	ENST00000294008.3:c.2532A>C	p.Glu844Asp	p.E844D	ENST00000294008	NM_032444.2	844	gaA/gaC																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618723	37618723	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	414	358	1	ENST00000447079.4:c.400del	p.Gln134LysfsTer10	p.Q134Kfs*10	ENST00000447079	NM_015083.1	133	agC/ag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117562	70117562	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	256	320	0	ENST00000245479.2:c.30G>C	p.Met10Ile	p.M10I	ENST00000245479	NM_000346.3	10	atG/atC																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120087	70120087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	309	331	0	ENST00000245479.2:c.1089G>T	p.Gln363His	p.Q363H	ENST00000245479	NM_000346.3	363	caG/caT																																																																															
BCL2	596	MSKCC	GRCh37	18	60985748	60985748	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	297	291	0	ENST00000333681.4:c.152C>A	p.Ser51Tyr	p.S51Y	ENST00000333681		51	tCc/tAc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943670	17943670	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			107	352	382	0	ENST00000458235.1:c.2419C>G	p.Gln807Glu	p.Q807E	ENST00000458235	NM_000215.3	807	Cag/Gag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212642	36212642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	140	338	0	ENST00000222270.7:c.2393G>C	p.Arg798Thr	p.R798T	ENST00000222270	NM_014727.1	798	aGa/aCa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231581	5231581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	109	165	0	ENST00000357368.4:c.1895C>T	p.Ser632Phe	p.S632F	ENST00000357368	NM_002850.3	632	tCc/tTc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128047389	128047389	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	119	237	0	ENST00000285398.2:c.533A>G	p.Glu178Gly	p.E178G	ENST00000285398	NM_000122.1	178	gAa/gGa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530052	212530052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	339	262	0	ENST00000342788.4:c.1867C>A	p.Gln623Lys	p.Q623K	ENST00000342788	NM_005235.2	623	Caa/Aaa																																																																															
ALK	238	MSKCC	GRCh37	2	29754898	29754898	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	260	326	0	ENST00000389048.3:c.1037C>A	p.Thr346Lys	p.T346K	ENST00000389048	NM_004304.4	346	aCa/aAa																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47602376	47602376	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs878854488		P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	54	200	0	ENST00000263735.4:c.429G>A	p.Trp143Ter	p.W143*	ENST00000263735	NM_002354.2	143	tgG/tgA																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182213	99182213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	160	268	0	ENST00000074304.5:c.2278G>T	p.Val760Phe	p.V760F	ENST00000074304	NM_001134224.1	760	Gtc/Ttc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021369	31021370	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	125	373	0	ENST00000375687.4:c.1368_1369delinsCT	p.Asp457Tyr	p.D457Y	ENST00000375687	NM_015338.5	456	acTGac/acCTac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713439	40713439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	130	329	0	ENST00000373198.4:c.4076G>T	p.Trp1359Leu	p.W1359L	ENST00000373198	NM_133170.3	1359	tGg/tTg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265336	46265336	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	39	260	0	ENST00000371998.3:c.2206G>T	p.Ala736Ser	p.A736S	ENST00000371998		736	Gca/Tca																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205810	128205810	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	201	331	0	ENST00000341105.2:c.65C>A	p.Pro22His	p.P22H	ENST00000341105	NM_032638.4	22	cCc/cAc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146633	185146633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			780	114	292	0	ENST00000265026.3:c.264G>T	p.Arg88Ser	p.R88S	ENST00000265026	NM_004721.4	88	agG/agT																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026153	71026153	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	168	189	0	ENST00000318789.4:c.1469A>T	p.Glu490Val	p.E490V	ENST00000318789	NM_032682.5	490	gAg/gTg																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73112824	73112824	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	49	148	0	ENST00000356692.5:c.420G>T	p.Glu140Asp	p.E140D	ENST00000356692		140	gaG/gaT																																																																															
TET2	54790	MSKCC	GRCh37	4	106155754	106155754	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	46	305	0	ENST00000380013.4:c.655G>T	p.Glu219Ter	p.E219*	ENST00000380013	NM_001127208.2	219	Gaa/Taa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143226654	143226654	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	142	252	0	ENST00000262992.4:c.460G>T	p.Glu154Ter	p.E154*	ENST00000262992	NM_001101669.1	154	Gag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187519166	187519166	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	34	234	0	ENST00000441802.2:c.12217G>T	p.Gly4073Cys	p.G4073C	ENST00000441802	NM_005245.3	4073	Ggc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630219	187630219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	72	333	0	ENST00000441802.2:c.763C>T	p.Pro255Ser	p.P255S	ENST00000441802	NM_005245.3	255	Ccg/Tcg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66242729	66242729	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	91	290	0	ENST00000273854.3:c.1843C>A	p.Pro615Thr	p.P615T	ENST00000273854	NM_004439.5	615	Cca/Aca																																																																															
TERT	7015	MSKCC	GRCh37	5	1295849	1295849	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	351	377	0				ENST00000310581	NM_198253.2																																																																																	
RAD50	10111	MSKCC	GRCh37	5	131951793	131951793	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	58	199	0	ENST00000265335.6:c.3135G>T	p.Met1045Ile	p.M1045I	ENST00000265335		1045	atG/atT																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459737	149459737	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	173	344	0	ENST00000286301.3:c.470C>A	p.Ser157Ter	p.S157*	ENST00000286301	NM_005211.3	157	tCg/tAg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111828	56111828	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	87	181	0	ENST00000399503.3:c.428C>A	p.Pro143His	p.P143H	ENST00000399503	NM_005921.1	143	cCc/cAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111840	56111840	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	73	183	0	ENST00000399503.3:c.442del	p.Ala148ArgfsTer37	p.A148Rfs*37	ENST00000399503	NM_005921.1	147	cGg/cg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79950629	79950629	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	267	273	0	ENST00000265081.6:c.83T>A	p.Phe28Tyr	p.F28Y	ENST00000265081	NM_002439.4	28	tTc/tAc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681001	117681001	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			827	88	263	0	ENST00000368508.3:c.3619C>G	p.Leu1207Val	p.L1207V	ENST00000368508	NM_002944.2	1207	Ctg/Gtg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056349	26056350	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	171	298	0	ENST00000343677.2:c.307_308delinsTT	p.Gly103Phe	p.G103F	ENST00000343677	NM_005319.3	103	GGc/TTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166477	32166477	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1171345424		P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	184	266	0	ENST00000375023.3:c.4566G>T	p.Glu1522Asp	p.E1522D	ENST00000375023	NM_004557.3	1522	gaG/gaT																																																																															
ABL1	25	MSKCC	GRCh37	9	133760399	133760399	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	124	355	0	ENST00000318560.5:c.2722G>C	p.Gly908Arg	p.G908R	ENST00000318560	NM_005157.4	908	Ggg/Cgg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2123869	2123869	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	121	281	0	ENST00000349721.2:c.3915del	p.Arg1306GlyfsTer21	p.R1306Gfs*21	ENST00000349721	NM_003070.3	1305	Ggg/gg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500795	8500795	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1172789699		P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	124	333	0	ENST00000356435.5:c.2087G>A	p.Gly696Asp	p.G696D	ENST00000356435		696	gGc/gAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521534	8521535	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	194	275	0	ENST00000356435.5:c.703_704delinsAA	p.Pro235Lys	p.P235K	ENST00000356435		235	CCa/AAa																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152853870	152853870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			50	44	125	0	ENST00000406277.2:c.694G>T	p.Val232Leu	p.V232L	ENST00000406277	NM_152274.4	232	Gtg/Ttg																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858080	152858080	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	171	314	0	ENST00000406277.2:c.535G>T	p.Ala179Ser	p.A179S	ENST00000406277	NM_152274.4	179	Gcg/Tcg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411815	63411815	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078154-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	178	334	0	ENST00000330258.3:c.1352G>C	p.Gly451Ala	p.G451A	ENST00000330258	NM_152424.3	451	gGg/gCg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539951	187539951	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777631605		P-0078156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	62	359	0	ENST00000441802.2:c.7789C>T	p.Arg2597Ter	p.R2597*	ENST00000441802	NM_005245.3	2597	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs886039484		P-0078156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	101	461	0	ENST00000269305.4:c.643A>G	p.Ser215Gly	p.S215G	ENST00000269305	NM_001126112.2	215	Agt/Ggt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68930087	68930087	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	77	298	0	ENST00000288368.4:c.148T>G	p.Leu50Val	p.L50V	ENST00000288368	NM_024870.2	50	Tta/Gta																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489543	40489543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	40	413	1	ENST00000264657.5:c.707C>T	p.Thr236Met	p.T236M	ENST00000264657	NM_139276.2	236	aCg/aTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779271	3779271	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1370704436		P-0078156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	15	456	4	ENST00000262367.5:c.5777G>A	p.Arg1926Gln	p.R1926Q	ENST00000262367	NM_004380.2	1926	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581239	48581245	+	frameshift_variant	Frame_Shift_Del	DEL	CATCCAG	CATCCAG	-			P-0078156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	29	421	0	ENST00000342988.3:c.549_555del	p.Gln183HisfsTer17	p.Q183Hfs*17	ENST00000342988	NM_005359.5	181	acCATCCAG/ac																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240219	41240219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	26	292	0	ENST00000379561.5:c.131C>A	p.Pro44Gln	p.P44Q	ENST00000379561	NM_002015.3	44	cCg/cAg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117647537	117647537	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	28	429	0	ENST00000368508.3:c.5407T>C	p.Trp1803Arg	p.W1803R	ENST00000368508	NM_002944.2	1803	Tgg/Cgg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467786	66467786	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	50	365	0	ENST00000273854.3:c.483G>T	p.Gln161His	p.Q161H	ENST00000273854	NM_004439.5	161	caG/caT																																																																															
CDK6	1021	MSKCC	GRCh37	7	92462424	92462424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	23	313	0	ENST00000265734.4:c.214G>A	p.Glu72Lys	p.E72K	ENST00000265734	NM_001259.6	72	Gag/Aag																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240139	41240139	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	20	295	0	ENST00000379561.5:c.211A>C	p.Met71Leu	p.M71L	ENST00000379561	NM_002015.3	71	Atg/Ctg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0078158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	149	195	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	13	313	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119043	70119043	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	202	332	0	ENST00000245479.2:c.615G>C	p.Lys205Asn	p.K205N	ENST00000245479	NM_000346.3	205	aaG/aaC																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857895	9857895	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761399460		P-0078172-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			311	107	403	0	ENST00000330684.3:c.3506G>A	p.Arg1169Gln	p.R1169Q	ENST00000330684	NM_001134407.1	1169	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579310	7579310	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0078172-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			364	139	323	0	ENST00000269305.4:c.375+2T>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
SMAD3	4088	MSKCC	GRCh37	15	67482864	67482864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078172-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			377	217	324	0	ENST00000327367.4:c.1268G>C	p.Ser423Thr	p.S423T	ENST00000327367	NM_005902.3	423	aGt/aCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0078172-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			116	60	236	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023376	27023377	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGCCGC	rs774655728		P-0078172-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			520	69	265	0	ENST00000324856.7:c.489_494dup	p.Ala166_Ala167dup	p.A166_A167dup	ENST00000324856	NM_006015.4	166	gtc/gtCGCCGCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0078180-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			564	234	292	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770623	40770623	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078180-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			203	128	358	0	ENST00000373198.4:c.2759C>A	p.Thr920Lys	p.T920K	ENST00000373198	NM_133170.3	920	aCa/aAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249091	55249091	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519861		P-0078180-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			780	350	387	0	ENST00000275493.2:c.2389T>A	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	Tgc/Agc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535363	66535363	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078180-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			364	143	348	0	ENST00000273854.3:c.98C>G	p.Ser33Cys	p.S33C	ENST00000273854	NM_004439.5	33	tCt/tGt																																																																															
CDK4	1019	MSKCC	GRCh37	12	58142964	58142964	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0078180-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			4100	150	0	0	ENST00000257904.6:c.819+1G>A		p.X273_splice	ENST00000257904	NM_000075.3	273																																																																																
RBM10	8241	MSKCC	GRCh37	X	47028866	47028875	+	frameshift_variant	Frame_Shift_Del	DEL	ATGACGACTC	ATGACGACTC	-			P-0078180-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			56	265	188	0	ENST00000329236.7:c.172_181del	p.Asp58LeufsTer24	p.D58Lfs*24	ENST00000329236	NM_001204466.1	57	tATGACGACTCa/ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514495		P-0078183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			44	117	346	0	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0078183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			30	18	288	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920419	114920419	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs750925453		P-0078183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	64	291	0	ENST00000543371.1:c.1360G>T	p.Asp454Tyr	p.D454Y	ENST00000543371	NM_001198531.1	454	Gac/Tac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931622	39931622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			32	70	158	0	ENST00000378444.4:c.2977C>T	p.Arg993Trp	p.R993W	ENST00000378444	NM_001123385.1	993	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0078184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	116	401	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0078184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	143	319	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246655	46246656	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0078184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	48	292	0	ENST00000334344.6:c.4751_4752del	p.Tyr1584CysfsTer24	p.Y1584Cfs*24	ENST00000334344	NM_152641.2	1583	acATat/acat																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385119	41385119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			809	48	304	0	ENST00000373198.4:c.842C>T	p.Ala281Val	p.A281V	ENST00000373198	NM_133170.3	281	gCg/gTg																																																																															
JUN	3725	MSKCC	GRCh37	1	59248144	59248902	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	TGCGCGGGAAAGGCCAGGCCGGCCGCGCCGTAGGAGGGCGCCCCGCCGCCGCTGCTCAGCGCGCCTGGGTTGAAGTTGCTGAGGTTTGCGTAGACCGGCGGCTCGCTGTGCAGGCTGGCGCTGAAGCCGCCGCTGCCGCTGCCCCCTGCCACCGAGGCTACCGCGGGAGCCACCATGCCTGCCCCGTTGACCGGCTGCGCCGCCGACGTGACGCTGGGCAGCGTGTTCTGGCTGTGCAGTTCGGCCAGGGCGCGCACGAAGCCCTCGGCGAAGCCCTCCTGCTCATCTGTCACGTTCTTGGGGCACAGGAACTGGGTGGGGGTCGGCGTGGTGGTGATGTGCCCGTTGCTGGACTGGATTATCAGGCGCTCCAGCTCGGGCGACGCCAGCTTGAGCAGCCCCACGTCGGGCGAGGTGAGGAGGTCCGAGTTCTTGGCGCGGAGGTGCGGCTTCAGGCTCCCCACTGGGTCGGCCAGGTTCAGGGTCATGCTCTGTTTCAGGATCTTGGGGTTACTGTAGCCATAAGGTCCGCTCTCGGACGGGAGGAACGAGGCGTTGAGGGCATCGTCATAGAAGGTCGTTTCCATCTTTGCAGTCATAGAACAGTCCGTCACTTCACGTGAGGTTAGTTTGGGCTGCGCGCACAAGTTTCGGGGCCGCAACAGGGCTGTGGCAAGCGGGGGACACCCGCGCCCCCCGGAGCCTTTGACAGGGAAAGTTTCTCTAAGAGCGCACGCACCCGCTGGCTGTCGTCCCCGC	TGCGCGGGAAAGGCCAGGCCGGCCGCGCCGTAGGAGGGCGCCCCGCCGCCGCTGCTCAGCGCGCCTGGGTTGAAGTTGCTGAGGTTTGCGTAGACCGGCGGCTCGCTGTGCAGGCTGGCGCTGAAGCCGCCGCTGCCGCTGCCCCCTGCCACCGAGGCTACCGCGGGAGCCACCATGCCTGCCCCGTTGACCGGCTGCGCCGCCGACGTGACGCTGGGCAGCGTGTTCTGGCTGTGCAGTTCGGCCAGGGCGCGCACGAAGCCCTCGGCGAAGCCCTCCTGCTCATCTGTCACGTTCTTGGGGCACAGGAACTGGGTGGGGGTCGGCGTGGTGGTGATGTGCCCGTTGCTGGACTGGATTATCAGGCGCTCCAGCTCGGGCGACGCCAGCTTGAGCAGCCCCACGTCGGGCGAGGTGAGGAGGTCCGAGTTCTTGGCGCGGAGGTGCGGCTTCAGGCTCCCCACTGGGTCGGCCAGGTTCAGGGTCATGCTCTGTTTCAGGATCTTGGGGTTACTGTAGCCATAAGGTCCGCTCTCGGACGGGAGGAACGAGGCGTTGAGGGCATCGTCATAGAAGGTCGTTTCCATCTTTGCAGTCATAGAACAGTCCGTCACTTCACGTGAGGTTAGTTTGGGCTGCGCGCACAAGTTTCGGGGCCGCAACAGGGCTGTGGCAAGCGGGGGACACCCGCGCCCCCCGGAGCCTTTGACAGGGAAAGTTTCTCTAAGAGCGCACGCACCCGCTGGCTGTCGTCCCCGC	-			P-0078184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	68	439	0	ENST00000371222.2:c.-160_599del		p.*54*	ENST00000371222	NM_002228.3																																																																																	
ATM	472	MSKCC	GRCh37	11	108183190	108183191	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078185-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	54	317	2	ENST00000278616.4:c.5977dup	p.Ser1993LysfsTer2	p.S1993Kfs*2	ENST00000278616	NM_000051.3	1991	gaa/gAaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078187-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	14	258	0	ENST00000263967.3:c.317G>C	p.Gly106Ala	p.G106A	ENST00000263967	NM_006218.2	106	gGc/gCc																																																																															
MET	4233	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	T			P-0078187-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	51	355	0	ENST00000397752.3:c.3028+3A>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
HIST1H3B	8358	MSKCC	GRCh37	6	26032080	26032080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078187-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	50	442	0	ENST00000244661.2:c.209G>A	p.Arg70His	p.R70H	ENST00000244661	NM_003537.3	70	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078188-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	479	387	0	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag																																																																															
RB1	5925	MSKCC	GRCh37	13	48947596	48947596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078188-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			54	158	253	0	ENST00000267163.4:c.1183C>T	p.Gln395Ter	p.Q395*	ENST00000267163	NM_000321.2	395	Caa/Taa																																																																															
ALK	238	MSKCC	GRCh37	2	29416532	29416532	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078188-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	242	412	0	ENST00000389048.3:c.4421del	p.Gly1474AspfsTer3	p.G1474Dfs*3	ENST00000389048	NM_004304.4	1474	gGa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0078188-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	422	254	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69009438	69009438	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0078188-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	301	305	0	ENST00000288368.4:c.2553+2T>C		p.X851_splice	ENST00000288368	NM_024870.2	851																																																																																
SMAD3	4088	MSKCC	GRCh37	15	67358581	67358581	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0078189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	485	359	0	ENST00000327367.4:c.89G>A	p.Trp30Ter	p.W30*	ENST00000327367	NM_005902.3	30	tGg/tAg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920346	134920346	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	395	333	0	ENST00000398015.3:c.2161C>A	p.Leu721Ile	p.L721I	ENST00000398015	NM_004441.4	721	Ctt/Att																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204737525	204737525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	518	276	0	ENST00000302823.3:c.662C>T	p.Pro221Leu	p.P221L	ENST00000302823	NM_005214.4	221	cCc/cTc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005440	150005440	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886941227		P-0078189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	159	434	0	ENST00000253339.5:c.785C>T	p.Thr262Ile	p.T262I	ENST00000253339		262	aCt/aTt																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21345973	21345973	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1223430276		P-0078189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			965	264	450	0	ENST00000215739.8:c.848G>A	p.Arg283Gln	p.R283Q	ENST00000215739	NM_006767.3	283	cGg/cAg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205097	128205097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	114	450	0	ENST00000341105.2:c.344C>A	p.Pro115His	p.P115H	ENST00000341105	NM_032638.4	115	cCc/cAc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974790	15974790	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	347	289	0	ENST00000268712.3:c.4085A>T	p.Gln1362Leu	p.Q1362L	ENST00000268712	NM_006311.3	1362	cAg/cTg																																																																															
ALK	238	MSKCC	GRCh37	2	29455178	29455178	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	171	292	0	ENST00000389048.3:c.2624G>T	p.Gly875Val	p.G875V	ENST00000389048	NM_004304.4	875	gGa/gTa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121061	11121061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	227	300	0	ENST00000344626.4:c.2128G>A	p.Ala710Thr	p.A710T	ENST00000344626	NM_003072.3	710	Gcc/Acc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151866327	151866327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	294	226	0	ENST00000262189.6:c.9461G>T	p.Ser3154Ile	p.S3154I	ENST00000262189	NM_170606.2	3154	aGt/aTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273906	10273906	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	95	345	0	ENST00000330684.3:c.363C>G	p.Phe121Leu	p.F121L	ENST00000330684	NM_001134407.1	121	ttC/ttG																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401886	139401886	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	122	326	0	ENST00000277541.6:c.3514G>T	p.Val1172Leu	p.V1172L	ENST00000277541	NM_017617.3	1172	Gtg/Ttg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012926	176012926	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	144	276	0	ENST00000367669.3:c.1450A>T	p.Asn484Tyr	p.N484Y	ENST00000367669	NM_022457.5	484	Aac/Tac																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246093178	246093178	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	281	299	0	ENST00000388985.4:c.593A>T	p.Tyr198Phe	p.Y198F	ENST00000388985		198	tAt/tTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862780	9862780	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	387	340	0	ENST00000330684.3:c.2523C>A	p.Phe841Leu	p.F841L	ENST00000330684	NM_001134407.1	841	ttC/ttA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0078189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	425	330	0	ENST00000269305.4:c.822_823dup	p.Cys275PhefsTer71	p.C275Ffs*71	ENST00000269305	NM_001126112.2	275	tgt/tTTgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610400	10610400	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	296	370	0	ENST00000171111.5:c.310A>T	p.Ser104Cys	p.S104C	ENST00000171111	NM_203500.1	104	Agc/Tgc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144577	55144577	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	373	290	0	ENST00000257290.5:c.2051A>T	p.Asn684Ile	p.N684I	ENST00000257290	NM_006206.4	684	aAc/aTc																																																																															
TET1	80312	MSKCC	GRCh37	10	70333503	70333503	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	536	329	0	ENST00000373644.4:c.1408C>A	p.Pro470Thr	p.P470T	ENST00000373644	NM_030625.2	470	Cct/Act																																																																															
POLE	5426	MSKCC	GRCh37	12	133240982	133240982	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	65	387	0	ENST00000320574.5:c.2535G>T	p.Gln845His	p.Q845H	ENST00000320574	NM_006231.2	845	caG/caT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0078190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	59	219	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134180	41134180	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	95	342	0	ENST00000379561.5:c.1448G>C	p.Gly483Ala	p.G483A	ENST00000379561	NM_002015.3	483	gGg/gCg																																																																															
MAX	4149	MSKCC	GRCh37	14	65560437	65560439	+	frameshift_variant	Frame_Shift_Del	DEL	GGA	GGA	AG			P-0078190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	101	217	0	ENST00000358664.4:c.158_160delinsCT	p.Leu53ProfsTer12	p.L53Pfs*12	ENST00000358664	NM_002382.4	53	cTCCaa/cCTaa																																																																															
EP300	2033	MSKCC	GRCh37	22	41553203	41553203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	80	260	0	ENST00000263253.7:c.3292G>A	p.Asp1098Asn	p.D1098N	ENST00000263253	NM_001429.3	1098	Gat/Aat																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748047	41748047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	64	229	0	ENST00000226382.2:c.722C>T	p.Ala241Val	p.A241V	ENST00000226382	NM_003924.3	241	gCa/gTa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039876	47039877	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0078190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	107	141	0	ENST00000329236.7:c.987dup	p.Ala330CysfsTer35	p.A330Cfs*35	ENST00000329236	NM_001204466.1	329	att/aTtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0078209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	148	390	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	87	431	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
GATA2	2624	MSKCC	GRCh37	3	128199873	128199873	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780263343		P-0078209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	78	520	0	ENST00000341105.2:c.1432G>A	p.Ala478Thr	p.A478T	ENST00000341105	NM_032638.4	478	Gcc/Acc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946337	2946337	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759681668		P-0078209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	65	418	0	ENST00000396946.4:c.3400G>A	p.Val1134Ile	p.V1134I	ENST00000396946	NM_032415.4	1134	Gtt/Att																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097695	8097695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	80	475	0	ENST00000346208.3:c.77C>T	p.Thr26Met	p.T26M	ENST00000346208		26	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112174929	112174929	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	62	370	0	ENST00000257430.4:c.3638C>A	p.Ser1213Ter	p.S1213*	ENST00000257430	NM_000038.5	1213	tCa/tAa																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33680015	33680015	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143096498		P-0078209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	142	427	0	ENST00000308377.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000308377	NM_152270.3	689	cGg/cAg																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551748	150551748	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	63	445	0	ENST00000369026.2:c.259C>A	p.Pro87Thr	p.P87T	ENST00000369026	NM_021960.4	87	Ccc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0078210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	53	399	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175213	112175213	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0078210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	37	417	0	ENST00000257430.4:c.3922A>T	p.Lys1308Ter	p.K1308*	ENST00000257430	NM_000038.5	1308	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0078211-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			760	68	734	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10254644	10254644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148038464		P-0078211-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	47	487	0	ENST00000340748.4:c.2866G>A	p.Val956Met	p.V956M	ENST00000340748		956	Gtg/Atg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0078212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	73	332	0				ENST00000310581	NM_198253.2																																																																																	
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0078212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	23	194	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435470	18435470	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	30	332	0	ENST00000266497.5:c.455A>T	p.Asp152Val	p.D152V	ENST00000266497		152	gAt/gTt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248203	110248203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	33	223	0	ENST00000374672.4:c.1269G>T	p.Glu423Asp	p.E423D	ENST00000374672	NM_004235.4	423	gaG/gaT																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468244	50468244	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	49	393	0	ENST00000331340.3:c.1479C>A	p.Asn493Lys	p.N493K	ENST00000331340	NM_006060.4	493	aaC/aaA																																																																															
CTR9	9646	MSKCC	GRCh37	11	10790038	10790038	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0078212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	24	257	0	ENST00000361367.2:c.2109G>T	p.Met703Ile	p.M703I	ENST00000361367	NM_014633.3	703	atG/atT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629811	187629811	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	36	348	0	ENST00000441802.2:c.1171G>T	p.Ala391Ser	p.A391S	ENST00000441802	NM_005245.3	391	Gcc/Tcc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250499	110250499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	28	303	0	ENST00000374672.4:c.176C>T	p.Pro59Leu	p.P59L	ENST00000374672	NM_004235.4	59	cCc/cTc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533904	63533904	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201460658		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	32	404	2	ENST00000307078.5:c.1250C>T	p.Ala417Val	p.A417V	ENST00000307078	NM_004655.3	417	gCg/gTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			854	73	572	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015055	37015055	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1414110836		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	44	524	0	ENST00000358127.4:c.349C>T	p.Arg117Trp	p.R117W	ENST00000358127	NM_001280556.1	117	Cgg/Tgg																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727483	66727483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs727504317		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	43	409	0	ENST00000307102.5:c.199G>A	p.Asp67Asn	p.D67N	ENST00000307102	NM_002755.3	67	Gac/Aac																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522601	176522601	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	54	538	0	ENST00000292408.4:c.1703del	p.Pro568GlnfsTer53	p.P568Qfs*53	ENST00000292408	NM_213647.1	566	cgC/cg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953229	81953229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	48	402	0	ENST00000359376.3:c.2195G>A	p.Arg732His	p.R732H	ENST00000359376	NM_002661.3	732	cGc/cAc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022535	12022535	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs724159947		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			812	60	569	0	ENST00000396373.4:c.641C>T	p.Pro214Leu	p.P214L	ENST00000396373	NM_001987.4	214	cCg/cTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70351422	70351422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	41	407	0	ENST00000374080.3:c.4070G>A	p.Arg1357His	p.R1357H	ENST00000374080		1357	cGc/cAc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867091	45867091	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1260632618		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	48	420	0	ENST00000391945.4:c.1028G>A	p.Arg343Gln	p.R343Q	ENST00000391945	NM_000400.3	343	cGg/cAg																																																																															
POLE	5426	MSKCC	GRCh37	12	133244133	133244133	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759398253		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	40	424	0	ENST00000320574.5:c.2275C>T	p.Arg759Cys	p.R759C	ENST00000320574	NM_006231.2	759	Cgt/Tgt																																																																															
TET1	80312	MSKCC	GRCh37	10	70450582	70450582	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150708897		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	29	414	0	ENST00000373644.4:c.5422G>A	p.Val1808Met	p.V1808M	ENST00000373644	NM_030625.2	1808	Gtg/Atg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165283	47165283	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	32	451	0	ENST00000409792.3:c.843del	p.Glu282LysfsTer19	p.E282Kfs*19	ENST00000409792	NM_014159.6	281	aaA/aa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31386318	31386318	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747146892		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	53	561	0	ENST00000328111.2:c.1543G>A	p.Glu515Lys	p.E515K	ENST00000328111	NM_006892.3	515	Gag/Aag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332919	153332919	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs781123562		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	38	449	0	ENST00000281708.4:c.37C>T	p.Arg13Ter	p.R13*	ENST00000281708	NM_033632.3	13	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425038	49425038	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs587783690		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			737	63	520	0	ENST00000301067.7:c.13450C>T	p.Arg4484Ter	p.R4484*	ENST00000301067	NM_003482.3	4484	Cga/Tga																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210734	2210734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			723	65	501	0	ENST00000398665.3:c.1231C>T	p.Arg411Cys	p.R411C	ENST00000398665	NM_032482.2	411	Cgc/Tgc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522590	176522590	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765924274		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			705	58	543	1	ENST00000292408.4:c.1687C>T	p.Arg563Trp	p.R563W	ENST00000292408	NM_213647.1	563	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211899	36211899	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			712	43	483	0	ENST00000222270.7:c.1656del	p.Lys553AsnfsTer52	p.K553Nfs*52	ENST00000222270	NM_014727.1	550	gaC/ga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024614	31024614	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147456014		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			750	46	463	0	ENST00000375687.4:c.4099G>A	p.Val1367Ile	p.V1367I	ENST00000375687	NM_015338.5	1367	Gtc/Atc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	42	478	2	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
JUN	3725	MSKCC	GRCh37	1	59248397	59248397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			718	47	516	0	ENST00000371222.2:c.346C>T	p.Arg116Cys	p.R116C	ENST00000371222	NM_002228.3	116	Cgc/Tgc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632558	3632558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	44	484	0	ENST00000294008.3:c.5290C>T	p.Pro1764Ser	p.P1764S	ENST00000294008	NM_032444.2	1764	Ccg/Tcg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864218	57864218	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			725	74	538	2	ENST00000228682.2:c.1700del	p.Pro567LeufsTer46	p.P567Lfs*46	ENST00000228682	NM_005269.2	565	ttC/tt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141012	55141012	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501502		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	31	419	0	ENST00000257290.5:c.1658C>T	p.Pro553Leu	p.P553L	ENST00000257290	NM_006206.4	553	cCg/cTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98242737	98242737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	44	416	0	ENST00000331920.6:c.880C>T	p.Arg294Cys	p.R294C	ENST00000331920	NM_000264.3	294	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427506	49427506	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	42	470	0	ENST00000301067.7:c.10982del	p.Gly3661ValfsTer88	p.G3661Vfs*88	ENST00000301067	NM_003482.3	3661	gGt/gt																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128015227	128015227	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771245959		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	42	374	0	ENST00000285398.2:c.2294G>A	p.Arg765Gln	p.R765Q	ENST00000285398	NM_000122.1	765	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229069	36229069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			740	39	549	0	ENST00000222270.7:c.7849C>T	p.Arg2617Trp	p.R2617W	ENST00000222270	NM_014727.1	2617	Cgg/Tgg																																																																															
TET1	80312	MSKCC	GRCh37	10	70450805	70450805	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759636615		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	38	510	0	ENST00000373644.4:c.5645C>T	p.Thr1882Met	p.T1882M	ENST00000373644	NM_030625.2	1882	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993624	72993624	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs997674247		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			734	47	555	0	ENST00000268489.5:c.421G>A	p.Ala141Thr	p.A141T	ENST00000268489	NM_006885.3	141	Gcg/Acg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89837023	89837023	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777032467		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	37	342	0	ENST00000389301.3:c.2171C>T	p.Thr724Met	p.T724M	ENST00000389301	NM_000135.2	724	aCg/aTg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085897	16085897	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775092426		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	41	473	0	ENST00000281043.3:c.1073C>T	p.Pro358Leu	p.P358L	ENST00000281043	NM_005378.4	358	cCg/cTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412721	139412721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			661	36	450	0	ENST00000277541.6:c.1123G>A	p.Ala375Thr	p.A375T	ENST00000277541	NM_017617.3	375	Gca/Aca																																																																															
RAD50	10111	MSKCC	GRCh37	5	131915589	131915589	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764784659		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	13	276	0	ENST00000265335.6:c.587G>A	p.Arg196His	p.R196H	ENST00000265335		196	cGt/cAt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222632	53222632	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782413552		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	45	457	0	ENST00000375401.3:c.4304G>A	p.Arg1435His	p.R1435H	ENST00000375401	NM_004187.3	1435	cGc/cAc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86627206	86627206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	37	437	0	ENST00000274376.6:c.581G>A	p.Arg194His	p.R194H	ENST00000274376	NM_002890.2	194	cGc/cAc																																																																															
HRAS	3265	MSKCC	GRCh37	11	534288	534288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894230		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	40	466	0	ENST00000311189.7:c.35G>A	p.Gly12Asp	p.G12D	ENST00000311189		12	gGc/gAc																																																																															
SDHA	6389	MSKCC	GRCh37	5	225649	225649	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200675907		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	34	414	0	ENST00000264932.6:c.428C>T	p.Thr143Met	p.T143M	ENST00000264932	NM_004168.2	143	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894365		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	8	291	0	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata																																																																															
IRF4	3662	MSKCC	GRCh37	6	401427	401427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	30	408	0	ENST00000380956.4:c.749G>A	p.Cys250Tyr	p.C250Y	ENST00000380956	NM_001195286.1	250	tGc/tAc																																																																															
BLM	641	MSKCC	GRCh37	15	91354494	91354494	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs527291754		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			729	42	452	0	ENST00000355112.3:c.3934G>A	p.Ala1312Thr	p.A1312T	ENST00000355112	NM_000057.2	1312	Gct/Act																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226350	2226350	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1444953330		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			661	40	552	0	ENST00000326181.6:c.1963C>T	p.Arg655Ter	p.R655*	ENST00000326181	NM_032271.2	655	Cga/Tga																																																																															
APLNR	187	MSKCC	GRCh37	11	57004030	57004030	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs751033294		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	47	536	0	ENST00000257254.3:c.449C>T	p.Thr150Met	p.T150M	ENST00000257254		150	aCg/aTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42794627	42794627	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	40	461	0	ENST00000575354.2:c.1711del	p.Leu571TyrfsTer157	p.L571Yfs*157	ENST00000575354	NM_015125.3	569	ggC/gg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444806	49444806	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			885	69	569	0	ENST00000301067.7:c.2660G>T	p.Gly887Val	p.G887V	ENST00000301067	NM_003482.3	887	gGg/gTg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423230	47423230	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs180770251		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	42	498	0	ENST00000404338.3:c.1298G>A	p.Arg433Gln	p.R433Q	ENST00000404338	NM_004491.4	433	cGa/cAa																																																																															
POLE	5426	MSKCC	GRCh37	12	133220053	133220053	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	50	471	0	ENST00000320574.5:c.4384A>G	p.Thr1462Ala	p.T1462A	ENST00000320574	NM_006231.2	1462	Acc/Gcc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16024432	16024432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	56	427	0	ENST00000268712.3:c.1786G>A	p.Ala596Thr	p.A596T	ENST00000268712	NM_006311.3	596	Gcc/Acc																																																																															
MGA	23269	MSKCC	GRCh37	15	42042364	42042364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	45	545	0	ENST00000219905.7:c.6559G>A	p.Val2187Ile	p.V2187I	ENST00000219905	NM_001164273.1	2187	Gtt/Att																																																																															
RXRA	6256	MSKCC	GRCh37	9	137293537	137293538	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	46	523	0	ENST00000481739.1:c.93dup	p.Ser32LeufsTer149	p.S32Lfs*149	ENST00000481739	NM_002957.4	30	gcc/gCcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211899	36211900	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			743	43	508	2	ENST00000222270.7:c.1656dup	p.Lys553GlnfsTer46	p.K553Qfs*46	ENST00000222270	NM_014727.1	550	-/C																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713364	40713364	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199829523		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			783	46	541	1	ENST00000373198.4:c.4151A>G	p.Glu1384Gly	p.E1384G	ENST00000373198	NM_133170.3	1384	gAg/gGg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673311	30673311	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1026	67	665	0	ENST00000376406.3:c.3649C>T	p.Arg1217Ter	p.R1217*	ENST00000376406	NM_014641.2	1217	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343891	118343891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782365456		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			724	45	488	0	ENST00000534358.1:c.2017G>A	p.Ala673Thr	p.A673T	ENST00000534358	NM_005933.3	673	Gct/Act																																																																															
BRCA1	672	MSKCC	GRCh37	17	41247932	41247932	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80357109		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	26	340	0	ENST00000357654.3:c.601G>A	p.Asp201Asn	p.D201N	ENST00000357654	NM_007294.3	201	Gat/Aat																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974751	15974751	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374872075		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	29	363	0	ENST00000268712.3:c.4124G>A	p.Arg1375Gln	p.R1375Q	ENST00000268712	NM_006311.3	1375	cGg/cAg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28896941	28896941	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs116741209		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	30	386	0	ENST00000282397.4:c.2939T>C	p.Val980Ala	p.V980A	ENST00000282397	NM_002019.4	980	gTt/gCt																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99850114	99850114	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	47	440	0	ENST00000280892.6:c.10C>A	p.Leu4Met	p.L4M	ENST00000280892	NM_001130678.1	4	Ctg/Atg																																																																															
CTR9	9646	MSKCC	GRCh37	11	10786119	10786119	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764192530		P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	34	405	1	ENST00000361367.2:c.1438C>T	p.Arg480Cys	p.R480C	ENST00000361367	NM_014633.3	480	Cgt/Tgt																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045691	26045691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			803	49	515	0	ENST00000540144.1:c.53G>A	p.Arg18His	p.R18H	ENST00000540144	NM_003531.2	18	cGc/cAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436384	110436384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	45	547	0	ENST00000375856.3:c.2017G>A	p.Asp673Asn	p.D673N	ENST00000375856	NM_003749.2	673	Gac/Aac																																																																															
GNB1	2782	MSKCC	GRCh37	1	1735968	1735968	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	31	453	0	ENST00000378609.4:c.320del	p.Pro107LeufsTer20	p.P107Lfs*20	ENST00000378609	NM_002074.3	107	cCt/ct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0078223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	50	217	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
POT1	25913	MSKCC	GRCh37	7	124481026	124481026	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0078223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	15	204	0	ENST00000357628.3:c.1369+1G>T		p.X457_splice	ENST00000357628	NM_015450.2	457																																																																																
CYSLTR2	57105	MSKCC	GRCh37	13	49281147	49281147	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	54	300	0	ENST00000282018.3:c.194A>T	p.Gln65Leu	p.Q65L	ENST00000282018	NM_020377.2	65	cAg/cTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88671947	88671947	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	15	195	0	ENST00000360948.2:c.1223T>C	p.Ile408Thr	p.I408T	ENST00000360948	NM_001012338.2	408	aTc/aCc																																																																															
NF1	4763	MSKCC	GRCh37	17	29553615	29553615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	46	308	0	ENST00000358273.4:c.2164G>T	p.Gly722Trp	p.G722W	ENST00000358273	NM_001042492.2	722	Ggg/Tgg																																																																															
ATR	545	MSKCC	GRCh37	3	142268350	142268350	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs772258541		P-0078223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	14	193	0	ENST00000350721.4:c.3142G>T	p.Glu1048Ter	p.E1048*	ENST00000350721	NM_001184.3	1048	Gaa/Taa																																																																															
TERT	7015	MSKCC	GRCh37	5	1293786	1293786	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	24	369	0	ENST00000310581.5:c.1215C>A	p.Tyr405Ter	p.Y405*	ENST00000310581	NM_198253.2	405	taC/taA																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793731	89793731	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	77	299	0	ENST00000336032.3:c.800del	p.Ser267Ter	p.S267*	ENST00000336032	NM_006813.2	267	tCa/ta																																																																															
POT1	25913	MSKCC	GRCh37	7	124511043	124511044	+	missense_variant	Missense_Mutation	DNP	GC	GC	CA			P-0078223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	22	208	0	ENST00000357628.3:c.176_177delinsTG	p.Cys59Leu	p.C59L	ENST00000357628	NM_015450.2	59	tGC/tTG																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98220310	98220311	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0078223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	49	279	0	ENST00000331920.6:c.3152_3153delinsCT	p.Trp1051Ser	p.W1051S	ENST00000331920	NM_000264.3	1051	tGG/tCT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411230	63411230	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs147754688		P-0078223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	47	347	0	ENST00000330258.3:c.1937G>T	p.Arg646Leu	p.R646L	ENST00000330258	NM_152424.3	646	cGg/cTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76777855	76777855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	50	278	0	ENST00000373344.5:c.6861G>A	p.Met2287Ile	p.M2287I	ENST00000373344	NM_000489.3	2287	atG/atA																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857197	9857197	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866121846		P-0078224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	31	446	0	ENST00000330684.3:c.4204C>T	p.Arg1402Trp	p.R1402W	ENST00000330684	NM_001134407.1	1402	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0078224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	11	229	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26021009	26021009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	49	603	0	ENST00000357647.3:c.292G>A	p.Glu98Lys	p.E98K	ENST00000357647	NM_003529.2	98	Gag/Aag																																																																															
DICER1	23405	MSKCC	GRCh37	14	95590690	95590690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	20	271	0	ENST00000343455.3:c.1219G>T	p.Asp407Tyr	p.D407Y	ENST00000343455	NM_177438.2	407	Gat/Tat																																																																															
TERT	7015	MSKCC	GRCh37	5	1294603	1294603	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	51	474	0	ENST00000310581.5:c.398G>T	p.Gly133Val	p.G133V	ENST00000310581	NM_198253.2	133	gGg/gTg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664726	138664726	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs765807161		P-0078224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	21	268	0	ENST00000330315.3:c.839C>G	p.Pro280Arg	p.P280R	ENST00000330315	NM_023067.3	280	cCg/cGg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873026	134873026	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	31	384	0	ENST00000398015.3:c.1330A>T	p.Ser444Cys	p.S444C	ENST00000398015	NM_004441.4	444	Agt/Tgt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932536	39932536	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	27	468	0	ENST00000378444.4:c.2063A>T	p.Asn688Ile	p.N688I	ENST00000378444	NM_001123385.1	688	aAt/aTt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16012202	16012202	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0078227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	77	321	0	ENST00000268712.3:c.2080C>T	p.Arg694Ter	p.R694*	ENST00000268712	NM_006311.3	694	Cga/Tga																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882099	36882099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199646937		P-0078227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	118	475	0	ENST00000358127.4:c.914G>A	p.Arg305His	p.R305H	ENST00000358127	NM_001280556.1	305	cGt/cAt																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72058500	72058500	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1428865181		P-0078227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	46	361	0	ENST00000357731.5:c.940C>T	p.Pro314Ser	p.P314S	ENST00000357731	NM_173808.2	314	Cct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0078227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	334	304	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PGR	5241	MSKCC	GRCh37	11	100998847	100998847	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1372729325		P-0078227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1455	80	436	0	ENST00000325455.5:c.955C>T	p.Arg319Cys	p.R319C	ENST00000325455	NM_001202474.3	319	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212466	36212466	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			715	338	556	0	ENST00000222270.7:c.2217del	p.Gln739HisfsTer50	p.Q739Hfs*50	ENST00000222270	NM_014727.1	739	caG/ca																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879852	37879860	+	inframe_deletion	In_Frame_Del	DEL	AAGAGACGG	AAGAGACGG	-			P-0078227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			748	113	635	0	ENST00000269571.5:c.2148_2156del	p.Glu717_Glu719del	p.E717_E719del	ENST00000269571		716	aAAGAGACGGag/aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0078236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	204	363	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
ABL1	25	MSKCC	GRCh37	9	133759697	133759697	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776289598		P-0078236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	114	282	0	ENST00000318560.5:c.2020C>T	p.Arg674Trp	p.R674W	ENST00000318560	NM_005157.4	674	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0078239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	154	402	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0078239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	135	319	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913250		P-0078239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	127	269	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026091	71026091	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0078239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	109	191	0	ENST00000318789.4:c.1530+1G>C		p.X510_splice	ENST00000318789	NM_032682.5	510																																																																																
SLX4	84464	MSKCC	GRCh37	16	3632351	3632351	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375100050		P-0078239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	149	332	0	ENST00000294008.3:c.5497C>T	p.Arg1833Trp	p.R1833W	ENST00000294008	NM_032444.2	1833	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112173585	112173595	+	frameshift_variant	Frame_Shift_Del	DEL	ATGCTCAGCAC	ATGCTCAGCAC	-			P-0078239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	101	312	0	ENST00000257430.4:c.2294_2304del	p.Asp765ValfsTer6	p.D765Vfs*6	ENST00000257430	NM_000038.5	765	gATGCTCAGCAC/g																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84403393	84403393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	77	252	0	ENST00000321945.7:c.92G>T	p.Gly31Val	p.G31V	ENST00000321945	NM_139076.2	31	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0078241-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			39	468	421	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249501	153249501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1316840275		P-0078241-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			52	375	328	1	ENST00000281708.4:c.1277C>T	p.Ser426Leu	p.S426L	ENST00000281708	NM_033632.3	426	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0078249-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	163	265	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971077	21971077	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0078249-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	171	316	0	ENST00000304494.5:c.281T>G	p.Leu94Arg	p.L94R	ENST00000304494	NM_000077.4	94	cTg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0078249-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			245	123	201	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0078255-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			162	124	428	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0078255-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			220	73	566	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117631362	117631362	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150262256		P-0078255-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	30	377	0	ENST00000368508.3:c.6316G>A	p.Ala2106Thr	p.A2106T	ENST00000368508	NM_002944.2	2106	Gcc/Acc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892182	9892182	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078255-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	118	538	0	ENST00000330684.3:c.2308C>G	p.Pro770Ala	p.P770A	ENST00000330684	NM_001134407.1	770	Cct/Gct																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488766	212488766	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078255-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			342	172	546	0	ENST00000342788.4:c.2083G>T	p.Val695Leu	p.V695L	ENST00000342788	NM_005235.2	695	Gtg/Ttg																																																																															
TET1	80312	MSKCC	GRCh37	10	70432756	70432756	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078255-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			251	75	447	0	ENST00000373644.4:c.4778G>T	p.Ser1593Ile	p.S1593I	ENST00000373644	NM_030625.2	1593	aGc/aTc																																																																															
CRKL	1399	MSKCC	GRCh37	22	21272322	21272322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078255-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			292	85	618	0	ENST00000354336.3:c.100G>A	p.Gly34Ser	p.G34S	ENST00000354336	NM_005207.3	34	Ggt/Agt																																																																															
TP63	8626	MSKCC	GRCh37	3	189604292	189604292	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078255-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	214	453	1	ENST00000264731.3:c.1459C>A	p.Arg487Ser	p.R487S	ENST00000264731	NM_003722.4	487	Cgc/Agc																																																																															
INHA	3623	MSKCC	GRCh37	2	220440053	220440053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078255-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	30	570	0	ENST00000243786.2:c.906C>A	p.Asn302Lys	p.N302K	ENST00000243786	NM_002191.3	302	aaC/aaA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55231463	55231463	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1488695603		P-0078258-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			252	67	278	0	ENST00000275493.2:c.1669C>T	p.Gln557Ter	p.Q557*	ENST00000275493	NM_005228.3	557	Cag/Tag																																																																															
MSH3	4437	MSKCC	GRCh37	5	80057491	80057492	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078258-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			142	68	256	0	ENST00000265081.6:c.1896dup	p.Cys633MetfsTer28	p.C633Mfs*28	ENST00000265081	NM_002439.4	630	-/A																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0078258-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			179	194	222	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467936	66467936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078258-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			226	54	291	0	ENST00000273854.3:c.333C>A	p.Asn111Lys	p.N111K	ENST00000273854	NM_004439.5	111	aaC/aaA																																																																															
MGA	23269	MSKCC	GRCh37	15	42042385	42042388	+	frameshift_variant	Frame_Shift_Del	DEL	AAGA	AAGA	-			P-0078258-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			310	80	366	0	ENST00000219905.7:c.6584_6587del	p.Lys2195ArgfsTer6	p.K2195Rfs*6	ENST00000219905	NM_001164273.1	2194	AAGAaa/aa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89337292	89337292	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078258-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			190	49	212	0	ENST00000301030.4:c.7739A>G	p.Asp2580Gly	p.D2580G	ENST00000301030	NM_001256183.1	2580	gAc/gGc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713544	30713546	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0078258-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			288	94	382	0	ENST00000359013.4:c.946_948del	p.Lys316del	p.K316del	ENST00000359013	NM_001024847.2	315	gAGAag/gag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0078263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	39	240	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231201	46231201	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0078263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	65	323	0	ENST00000334344.6:c.1120+1G>T		p.X374_splice	ENST00000334344	NM_152641.2	374																																																																																
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852217		P-0078263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	93	239	0	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443494	49443495	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0078263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	65	411	0	ENST00000301067.7:c.3875_3876dup	p.Ser1293AlafsTer38	p.S1293Afs*38	ENST00000301067	NM_003482.3	1292	-/GC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0078268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	155	287	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38957833	38957833	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0078268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	58	329	0	ENST00000357387.3:c.2421-1G>T		p.X807_splice	ENST00000357387	NM_152756.3	807																																																																																
TP53	7157	MSKCC	GRCh37	17	7577530	7577530	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	31	435	0	ENST00000269305.4:c.751A>T	p.Ile251Phe	p.I251F	ENST00000269305	NM_001126112.2	251	Atc/Ttc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600332	10600332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	38	614	1	ENST00000171111.5:c.1523G>T	p.Ser508Ile	p.S508I	ENST00000171111	NM_203500.1	508	aGc/aTc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265220	46265220	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	46	518	0	ENST00000371998.3:c.2090A>G	p.Glu697Gly	p.E697G	ENST00000371998		697	gAg/gGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0078276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	8	307	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0078281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	549	684	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	260	561	1	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0078281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	162	357	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42035160	42035161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0078281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			766	356	653	0	ENST00000219905.7:c.5006dup	p.Val1670CysfsTer8	p.V1670Cfs*8	ENST00000219905	NM_001164273.1	1668	acc/aCcc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98221998	98221998	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1456450494		P-0078281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	295	532	0	ENST00000331920.6:c.2771C>T	p.Thr924Met	p.T924M	ENST00000331920	NM_000264.3	924	aCg/aTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163575	47163575	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078284-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	101	433	0	ENST00000409792.3:c.2551G>T	p.Glu851Ter	p.E851*	ENST00000409792	NM_014159.6	851	Gaa/Taa																																																																															
ATRX	546	MSKCC	GRCh37	X	76952064	76952064	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0078284-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	23	334	0	ENST00000373344.5:c.370+1G>C		p.X124_splice	ENST00000373344	NM_000489.3	124																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49434724	49434724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078284-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			825	140	664	0	ENST00000301067.7:c.6829C>T	p.Pro2277Ser	p.P2277S	ENST00000301067	NM_003482.3	2277	Cct/Tct																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	53	343	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	276	590	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			752	93	482	0	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	34	279	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	84	511	8	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	105	550	4	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
TET1	80312	MSKCC	GRCh37	10	70333863	70333863	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs750883311		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	108	470	0	ENST00000373644.4:c.1768C>T	p.Arg590Ter	p.R590*	ENST00000373644	NM_030625.2	590	Cga/Tga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	420175	420175	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1036242026		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			702	78	425	0	ENST00000399788.2:c.3092G>A	p.Arg1031His	p.R1031H	ENST00000399788	NM_001042603.1	1031	cGc/cAc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39657709	39657709	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	63	279	0	ENST00000361337.2:c.2T>C	p.Met1?	p.M1?	ENST00000361337	NM_003286.2	1	aTg/aCg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1181132297		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	36	386	0	ENST00000342505.4:c.1016del	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	37	306	0	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	121	398	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	134	509	0	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532517	63532517	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	119	527	0	ENST00000307078.5:c.2062del	p.Leu688Ter	p.L688*	ENST00000307078	NM_004655.3	688	Ctg/tg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	40	378	1	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
MST1	4485	MSKCC	GRCh37	3	49721511	49721511	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1255375162		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	109	281	0	ENST00000449682.2:c.2128C>T	p.Arg710Cys	p.R710C	ENST00000449682	NM_020998.3	710	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782596		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			772	23	584	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116263	209116263	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	48	340	0	ENST00000345146.2:c.13del	p.Ile5SerfsTer7	p.I5Sfs*7	ENST00000345146	NM_005896.2	5	Atc/tc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882050	36882050	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	99	448	1	ENST00000358127.4:c.963del	p.Ala322LeufsTer11	p.A322Lfs*11	ENST00000358127	NM_001280556.1	321	ccC/cc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932085	39932085	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	136	498	0	ENST00000378444.4:c.2514del	p.Lys839SerfsTer17	p.K839Sfs*17	ENST00000378444	NM_001123385.1	838	ccC/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270530	98270530	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1057518664		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	48	263	0	ENST00000331920.6:c.114del	p.Leu39CysfsTer41	p.L39Cfs*41	ENST00000331920	NM_000264.3	38	ggG/gg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98268793	98268793	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	90	382	0	ENST00000331920.6:c.290del	p.Asn97ThrfsTer20	p.N97Tfs*20	ENST00000331920	NM_000264.3	97	aAc/ac																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	111	467	3	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346158	89346158	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	68	592	0	ENST00000301030.4:c.6792del	p.Ala2265ProfsTer72	p.A2265Pfs*72	ENST00000301030	NM_001256183.1	2264	ccC/cc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	100	464	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006026	22006026	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1256288325		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	143	526	0	ENST00000276925.6:c.377G>A	p.Arg126His	p.R126H	ENST00000276925	NM_004936.3	126	cGc/cAc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47639588	47639588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	83	284	0	ENST00000233146.2:c.687del	p.Ala230LeufsTer16	p.A230Lfs*16	ENST00000233146	NM_000251.2	227	agA/ag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55153609	55153609	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060501520		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	101	418	0	ENST00000257290.5:c.2575G>A	p.Val859Met	p.V859M	ENST00000257290	NM_006206.4	859	Gtg/Atg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202351	138202351	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	125	528	1	ENST00000237289.4:c.2274del	p.Lys759SerfsTer57	p.K759Sfs*57	ENST00000237289	NM_001270507.1	756	gaC/ga																																																																															
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	68	459	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740727	58740727	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	136	444	0	ENST00000305921.3:c.1636del	p.Leu546Ter	p.L546*	ENST00000305921	NM_003620.3	544	ggC/gg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610522	81610522	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368452281		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	119	410	0	ENST00000298171.2:c.2120G>A	p.Arg707Gln	p.R707Q	ENST00000298171	NM_000369.2	707	cGg/cAg																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346220	152346220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	105	441	2	ENST00000359321.1:c.350del	p.Leu117TrpfsTer17	p.L117Wfs*17	ENST00000359321	NM_005431.1	117	tTg/tg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88677065	88677065	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765530074		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	55	246	0	ENST00000372037.3:c.850C>T	p.Arg284Cys	p.R284C	ENST00000372037	NM_004329.2	284	Cgc/Tgc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780235	9780235	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1397404017		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	121	451	0	ENST00000377346.4:c.1405G>A	p.Ala469Thr	p.A469T	ENST00000377346	NM_005026.3	469	Gct/Act																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	89	507	0	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	139	300	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626865	14626865	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			795	192	543	0	ENST00000254322.2:c.910del	p.Leu304SerfsTer17	p.L304Sfs*17	ENST00000254322	NM_006145.1	304	Ctc/tc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220064	36220064	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1232763910		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	127	568	0	ENST00000222270.7:c.4784C>T	p.Ala1595Val	p.A1595V	ENST00000222270	NM_014727.1	1595	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	49	602	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43730536	43730536	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	111	332	3	ENST00000382044.4:c.3177del	p.Thr1060ProfsTer36	p.T1060Pfs*36	ENST00000382044	NM_001141980.1	1059	ccC/cc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012386	152012386	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	57	370	0	ENST00000262189.6:c.427del	p.Ser143ValfsTer3	p.S143Vfs*3	ENST00000262189	NM_170606.2	143	Agt/gt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245133	53245133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	137	472	0	ENST00000375401.3:c.807del	p.Thr270GlnfsTer2	p.T270Qfs*2	ENST00000375401	NM_004187.3	269	ccC/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444378	49444378	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			699	155	576	0	ENST00000301067.7:c.2993del	p.Pro998LeufsTer2	p.P998Lfs*2	ENST00000301067	NM_003482.3	998	cCt/ct																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453399	40453399	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs759027671		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	148	450	0	ENST00000345506.4:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000345506	NM_003152.3	366	Ccc/cc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45394825	45394825	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	83	296	0	ENST00000262160.6:c.524del	p.Leu175CysfsTer5	p.L175Cfs*5	ENST00000262160	NM_005901.5	175	tTg/tg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18280069	18280069	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1321931050		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	108	364	0	ENST00000222254.8:c.2152G>A	p.Ala718Thr	p.A718T	ENST00000222254	NM_005027.3	718	Gcc/Acc																																																																															
MGA	23269	MSKCC	GRCh37	15	42054395	42054396	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	45	382	0	ENST00000219905.7:c.7585dup	p.Arg2529LysfsTer9	p.R2529Kfs*9	ENST00000219905	NM_001164273.1	2527	caa/cAaa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729744	162729744	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750450749		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	145	444	1	ENST00000367921.3:c.830G>A	p.Arg277His	p.R277H	ENST00000367921	NM_006182.2	277	cGc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258894	16258894	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			734	161	538	5	ENST00000375759.3:c.6164del	p.Pro2055LeufsTer9	p.P2055Lfs*9	ENST00000375759	NM_015001.2	2053	aaC/aa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964514	70964514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762086448		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			810	18	511	0	ENST00000276594.2:c.1514G>A	p.Arg505His	p.R505H	ENST00000276594	NM_024504.3	505	cGc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133219414	133219414	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs878854876		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	107	469	0	ENST00000320574.5:c.4720G>A	p.Ala1574Thr	p.A1574T	ENST00000320574	NM_006231.2	1574	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216697	36216697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	126	516	0	ENST00000222270.7:c.3863C>T	p.Ala1288Val	p.A1288V	ENST00000222270	NM_014727.1	1288	gCc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112111364	112111364	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	33	256	0	ENST00000257430.4:c.465del	p.Asp156ThrfsTer14	p.D156Tfs*14	ENST00000257430	NM_000038.5	154	gAa/ga																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128028933	128028933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	79	335	0	ENST00000285398.2:c.1924C>T	p.Arg642Trp	p.R642W	ENST00000285398	NM_000122.1	642	Cgg/Tgg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918753	50918753	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751565067		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	73	433	0	ENST00000440232.2:c.2623C>T	p.Arg875Cys	p.R875C	ENST00000440232	NM_002691.3	875	Cgc/Tgc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136361	2136361	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs45517372		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	101	425	0	ENST00000219476.3:c.4830G>A	p.Trp1610Ter	p.W1610*	ENST00000219476	NM_000548.3	1610	tgG/tgA																																																																															
NUP93	9688	MSKCC	GRCh37	16	56862975	56862975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	66	395	0	ENST00000308159.5:c.881G>A	p.Arg294Gln	p.R294Q	ENST00000308159	NM_014669.4	294	cGa/cAa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216707	2216707	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1324630409		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	163	590	0	ENST00000398665.3:c.2351A>G	p.His784Arg	p.H784R	ENST00000398665	NM_032482.2	784	cAc/cGc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209260	98209260	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	108	453	0	ENST00000331920.6:c.4278G>T	p.Lys1426Asn	p.K1426N	ENST00000331920	NM_000264.3	1426	aaG/aaT																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551541	150551541	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs755770114		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	80	458	0	ENST00000369026.2:c.466A>G	p.Thr156Ala	p.T156A	ENST00000369026	NM_021960.4	156	Acg/Gcg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289686	15289686	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143684274		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	150	537	0	ENST00000263388.2:c.3785G>A	p.Arg1262His	p.R1262H	ENST00000263388	NM_000435.2	1262	cGt/cAt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473650	67473650	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773543026		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	112	420	0	ENST00000327367.4:c.730G>A	p.Val244Ile	p.V244I	ENST00000327367	NM_005902.3	244	Gtc/Atc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396974	396974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1170182478		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	144	475	0	ENST00000262320.3:c.52G>A	p.Glu18Lys	p.E18K	ENST00000262320	NM_003502.3	18	Gaa/Aaa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738281	145738281	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761231404		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	136	583	0	ENST00000428558.2:c.2704C>T	p.Arg902Trp	p.R902W	ENST00000428558	NM_004260.3	902	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218069	36218069	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1363001300		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	86	332	0	ENST00000222270.7:c.4016C>T	p.Pro1339Leu	p.P1339L	ENST00000222270	NM_014727.1	1339	cCg/cTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	104	423	2	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121593	2121593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	127	478	0	ENST00000219476.3:c.1922G>A	p.Ser641Asn	p.S641N	ENST00000219476	NM_000548.3	641	aGc/aAc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503884	47503884	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	88	423	1	ENST00000404338.3:c.4444del	p.Gln1482SerfsTer317	p.Q1482Sfs*317	ENST00000404338	NM_004491.4	1480	aCc/ac																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664711	138664711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	110	297	1	ENST00000330315.3:c.854C>T	p.Pro285Leu	p.P285L	ENST00000330315	NM_023067.3	285	cCg/cTg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807539	1807539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	120	509	0	ENST00000260795.2:c.1708C>T	p.Arg570Trp	p.R570W	ENST00000260795		570	Cgg/Tgg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162475165	162475165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	84	393	0	ENST00000366898.1:c.576G>A	p.Met192Ile	p.M192I	ENST00000366898	NM_004562.2	192	atG/atA																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911052	29911052	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	78	477	0	ENST00000376809.5:c.351del	p.His117GlnfsTer5	p.H117Qfs*5	ENST00000376809	NM_002116.7	117	caC/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7590693	7590693	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	86	392	0	ENST00000269305.4:c.-29+2T>C		p.X10_splice	ENST00000269305	NM_001126112.2	10																																																																																
FOXO1	2308	MSKCC	GRCh37	13	41239943	41239943	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	52	292	0	ENST00000379561.5:c.407C>A	p.Pro136Gln	p.P136Q	ENST00000379561	NM_002015.3	136	cCg/cAg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56480392	56480392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	133	389	0	ENST00000267101.3:c.499G>A	p.Val167Met	p.V167M	ENST00000267101	NM_001982.3	167	Gtg/Atg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46276005	46276005	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	139	471	0	ENST00000371998.3:c.3441T>G	p.Asn1147Lys	p.N1147K	ENST00000371998		1147	aaT/aaG																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923812	72923812	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	115	375	0	ENST00000268489.5:c.3266A>G	p.His1089Arg	p.H1089R	ENST00000268489	NM_006885.3	1089	cAc/cGc																																																																															
E2F3	1871	MSKCC	GRCh37	6	20483134	20483134	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	88	346	0	ENST00000346618.3:c.867G>T	p.Glu289Asp	p.E289D	ENST00000346618	NM_001949.4	289	gaG/gaT																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540395	23540395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	76	364	0	ENST00000380871.4:c.8G>T	p.Arg3Met	p.R3M	ENST00000380871	NM_006167.3	3	aGg/aTg																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31238970	31238970	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			24	19	51	0	ENST00000376228.5:c.499A>G	p.Thr167Ala	p.T167A	ENST00000376228	NM_002117.5	167	Acc/Gcc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189917	66189917	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	88	306	0	ENST00000273854.3:c.3029T>C	p.Val1010Ala	p.V1010A	ENST00000273854	NM_004439.5	1010	gTg/gCg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703680	47703680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	81	346	0	ENST00000233146.2:c.2180C>T	p.Ala727Val	p.A727V	ENST00000233146	NM_000251.2	727	gCt/gTt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682197	37682197	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	132	405	0	ENST00000447079.4:c.3388A>T	p.Ser1130Cys	p.S1130C	ENST00000447079	NM_015083.1	1130	Agc/Tgc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115279407	115279407	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	67	288	0	ENST00000438362.2:c.610del	p.Ile204Ter	p.I204*	ENST00000438362	NM_001242891.1	204	Ata/ta																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633209	3633209	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs530123827		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	132	508	1	ENST00000294008.3:c.5042C>T	p.Ser1681Leu	p.S1681L	ENST00000294008	NM_032444.2	1681	tCg/tTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004607	16004607	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	76	394	0	ENST00000268712.3:c.2647T>C	p.Cys883Arg	p.C883R	ENST00000268712	NM_006311.3	883	Tgc/Cgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151864329	151864329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	92	353	0	ENST00000262189.6:c.9652A>G	p.Thr3218Ala	p.T3218A	ENST00000262189	NM_170606.2	3218	Act/Gct																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030328	180030328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145806915		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	125	536	0	ENST00000261937.6:c.3956G>A	p.Arg1319Gln	p.R1319Q	ENST00000261937	NM_182925.4	1319	cGg/cAg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141566029	141566029	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	88	358	0	ENST00000220592.5:c.1235T>C	p.Val412Ala	p.V412A	ENST00000220592	NM_012154.3	412	gTg/gCg																																																																															
EED	8726	MSKCC	GRCh37	11	85967462	85967462	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	21	332	0	ENST00000263360.6:c.460T>C	p.Tyr154His	p.Y154H	ENST00000263360	NM_003797.3	154	Tat/Cat																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690258	33690258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	63	529	0	ENST00000308377.4:c.569C>T	p.Ala190Val	p.A190V	ENST00000308377	NM_152270.3	190	gCt/gTt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672353	86672353	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	73	342	0	ENST00000274376.6:c.2155C>A	p.Pro719Thr	p.P719T	ENST00000274376	NM_002890.2	719	Cca/Aca																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152861628	152861628	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781948889		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	108	365	0	ENST00000406277.2:c.124C>T	p.Arg42Trp	p.R42W	ENST00000406277	NM_152274.4	42	Cgg/Tgg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265336	46265336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	95	448	0	ENST00000371998.3:c.2206G>A	p.Ala736Thr	p.A736T	ENST00000371998		736	Gca/Aca																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80343570	80343570	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	46	359	0	ENST00000286548.4:c.749A>G	p.Glu250Gly	p.E250G	ENST00000286548	NM_002072.3	250	gAa/gGa																																																																															
VHL	7428	MSKCC	GRCh37	3	10188209	10188209	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773684010		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	111	292	0	ENST00000256474.2:c.352C>T	p.Leu118Phe	p.L118F	ENST00000256474	NM_000551.3	118	Ctc/Ttc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89337319	89337319	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	57	328	0	ENST00000301030.4:c.7714-2A>C		p.X2572_splice	ENST00000301030	NM_001256183.1	2572																																																																																
DICER1	23405	MSKCC	GRCh37	14	95562578	95562578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	163	492	0	ENST00000343455.3:c.4679C>T	p.Ala1560Val	p.A1560V	ENST00000343455	NM_177438.2	1560	gCg/gTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660613	227660613	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1187009104		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	43	501	0	ENST00000305123.5:c.2842C>T	p.Pro948Ser	p.P948S	ENST00000305123	NM_005544.2	948	Ccg/Tcg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612251	1612251	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	90	465	0	ENST00000344749.5:c.1768C>T	p.Gln590Ter	p.Q590*	ENST00000344749	NM_001136139.2	590	Cag/Tag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357123	89357123	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375525371		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			712	170	585	1	ENST00000301030.4:c.511C>T	p.Arg171Cys	p.R171C	ENST00000301030	NM_001256183.1	171	Cgc/Tgc																																																																															
ATR	545	MSKCC	GRCh37	3	142177849	142177849	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	31	328	0	ENST00000350721.4:c.7454C>A	p.Ser2485Tyr	p.S2485Y	ENST00000350721	NM_001184.3	2485	tCt/tAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492919	56492919	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	139	381	0	ENST00000407977.2:c.20T>C	p.Leu7Pro	p.L7P	ENST00000407977		7	cTg/cCg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56400731	56400731	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	54	371	0	ENST00000348428.3:c.1325T>C	p.Val442Ala	p.V442A	ENST00000348428	NM_006785.3	442	gTa/gCa																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793209	33793209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	68	386	0	ENST00000498907.2:c.112G>A	p.Gly38Ser	p.G38S	ENST00000498907	NM_004364.3	38	Ggc/Agc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28578212	28578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1049983752		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	82	367	0	ENST00000241453.7:c.2959C>T	p.Gln987Ter	p.Q987*	ENST00000241453	NM_004119.2	987	Cag/Tag																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858167	27858167	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1436434441		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	171	463	0	ENST00000359303.2:c.404G>A	p.Arg135Gln	p.R135Q	ENST00000359303	NM_003535.2	135	cGa/cAa																																																																															
TET2	54790	MSKCC	GRCh37	4	106190813	106190813	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	101	350	0	ENST00000380013.4:c.4092del	p.Gly1365AlafsTer83	p.G1365Afs*83	ENST00000380013	NM_001127208.2	1364	gAa/ga																																																																															
EP300	2033	MSKCC	GRCh37	22	41573862	41573862	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	154	541	1	ENST00000263253.7:c.6147A>C	p.Gln2049His	p.Q2049H	ENST00000263253	NM_001429.3	2049	caA/caC																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934570	9934571	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	115	416	0	ENST00000330684.3:c.1584dup	p.Val529CysfsTer13	p.V529Cfs*13	ENST00000330684	NM_001134407.1	528	-/T																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426403	49426403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376131669		P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	134	521	0	ENST00000301067.7:c.12085G>A	p.Val4029Ile	p.V4029I	ENST00000301067	NM_003482.3	4029	Gta/Ata																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39570463	39570463	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	34	279	0	ENST00000262039.4:c.659A>G	p.Glu220Gly	p.E220G	ENST00000262039	NM_002647.2	220	gAa/gGa																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422435	47422435	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	69	429	0	ENST00000404338.3:c.503G>T	p.Arg168Met	p.R168M	ENST00000404338	NM_004491.4	168	aGg/aTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244966	46244967	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			699	135	557	0	ENST00000334344.6:c.3065dup	p.Pro1023ThrfsTer34	p.P1023Tfs*34	ENST00000334344	NM_152641.2	1020	-/C																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137808	64137808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	140	505	1	ENST00000334205.4:c.1909G>A	p.Gly637Arg	p.G637R	ENST00000334205	NM_003942.2	637	Ggg/Agg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663292	227663292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	90	404	1	ENST00000305123.5:c.163C>T	p.His55Tyr	p.H55Y	ENST00000305123	NM_005544.2	55	Cac/Tac																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424644	47424644	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	140	397	0	ENST00000404338.3:c.2712G>T	p.Gln904His	p.Q904H	ENST00000404338	NM_004491.4	904	caG/caT																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976757	2976757	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	86	406	0	ENST00000396946.4:c.1255A>G	p.Ile419Val	p.I419V	ENST00000396946	NM_032415.4	419	Atc/Gtc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2098672	2098672	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	136	376	0	ENST00000219476.3:c.56T>C	p.Leu19Ser	p.L19S	ENST00000219476	NM_000548.3	19	tTg/tCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519997		P-0078295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	29	453	0	ENST00000269305.4:c.332T>C	p.Leu111Pro	p.L111P	ENST00000269305	NM_001126112.2	111	cTg/cCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0078295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	97	241	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30648434	30648434	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	32	313	0	ENST00000359013.4:c.59T>C	p.Ile20Thr	p.I20T	ENST00000359013	NM_001024847.2	20	aTc/aCc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713396	30713396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	39	419	0	ENST00000359013.4:c.796C>A	p.Leu266Met	p.L266M	ENST00000359013	NM_001024847.2	266	Ctg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112173830	112173831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	102	394	0	ENST00000257430.4:c.2544dup	p.Asp849ArgfsTer2	p.D849Rfs*2	ENST00000257430	NM_000038.5	847	gaa/gAaa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149498324	149498324	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747398617		P-0078296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	120	420	0	ENST00000261799.4:c.2890G>A	p.Glu964Lys	p.E964K	ENST00000261799	NM_002609.3	964	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0078296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	97	220	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18649070	18649070	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	38	341	0	ENST00000266497.5:c.2745C>A	p.Asn915Lys	p.N915K	ENST00000266497		915	aaC/aaA																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382260	152382260	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0078296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	144	305	0	ENST00000206249.3:c.1369+1G>T		p.X457_splice	ENST00000206249	NM_000125.3	457																																																																																
TGFBR2	7048	MSKCC	GRCh37	3	30648449	30648449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	97	384	0	ENST00000359013.4:c.74C>T	p.Pro25Leu	p.P25L	ENST00000359013	NM_001024847.2	25	cCa/cTa																																																																															
APC	324	MSKCC	GRCh37	5	112175736	112175755	+	frameshift_variant	Frame_Shift_Del	DEL	TTCCAGATGCTGATACTTTA	TTCCAGATGCTGATACTTTA	-			P-0078296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	100	464	0	ENST00000257430.4:c.4447_4466del	p.Pro1483ThrfsTer24	p.P1483Tfs*24	ENST00000257430	NM_000038.5	1482	cTTCCAGATGCTGATACTTTA/c																																																																															
CARD11	84433	MSKCC	GRCh37	7	2951925	2951925	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147381531		P-0078297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	111	386	0	ENST00000396946.4:c.3025G>A	p.Val1009Ile	p.V1009I	ENST00000396946	NM_032415.4	1009	Gtc/Atc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156541	55156541	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368266633		P-0078297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	60	429	0	ENST00000257290.5:c.2942G>A	p.Arg981His	p.R981H	ENST00000257290	NM_006206.4	981	cGt/cAt																																																																															
ATRX	546	MSKCC	GRCh37	X	76952065	76952065	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0078297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	51	210	0	ENST00000373344.5:c.370G>T	p.Gly124Cys	p.G124C	ENST00000373344	NM_000489.3	124	Ggt/Tgt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110061	115110061	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755884541		P-0078297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	68	352	0	ENST00000257566.3:c.1817C>T	p.Thr606Met	p.T606M	ENST00000257566	NM_016569.3	606	aCg/aTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265922	41266247	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTA	AAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTA	-			P-0078297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			57	77	103	0	ENST00000349496.5:c.14-94_241+4del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
PRKD1	5587	MSKCC	GRCh37	14	30107923	30107923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	95	334	0	ENST00000331968.5:c.884T>C	p.Phe295Ser	p.F295S	ENST00000331968	NM_002742.2	295	tTc/tCc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078301-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			709	28	413	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0078303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	230	540	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881002	37881003	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTCCCCA			P-0078303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	604	542	0	ENST00000269571.5:c.2332_2340dup	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	-/GGCTCCCCA																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006155	22006155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	206	553	0	ENST00000276925.6:c.248C>T	p.Pro83Leu	p.P83L	ENST00000276925	NM_004936.3	83	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577062	7577062	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0078308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	80	414	0	ENST00000269305.4:c.876del	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	292	aaA/aa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610275	10610275	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	66	412	0	ENST00000171111.5:c.435C>G	p.Ile145Met	p.I145M	ENST00000171111	NM_203500.1	145	atC/atG																																																																															
NUP93	9688	MSKCC	GRCh37	16	56871574	56871574	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	60	345	0	ENST00000308159.5:c.1954C>T	p.Gln652Ter	p.Q652*	ENST00000308159	NM_014669.4	652	Cag/Tag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270168	66270168	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	41	336	0	ENST00000273854.3:c.1714A>T	p.Ile572Phe	p.I572F	ENST00000273854	NM_004439.5	572	Att/Ttt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324057	31324057	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs12697943		P-0078308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	15	157	0	ENST00000412585.2:c.506G>T	p.Arg169Leu	p.R169L	ENST00000412585	NM_005514.6	169	cGc/cTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416062	49416062	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs794727752		P-0078308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	22	380	0	ENST00000301067.7:c.16412+1G>T		p.X5471_splice	ENST00000301067	NM_003482.3	5471																																																																																
NBN	4683	MSKCC	GRCh37	8	90965906	90965906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	23	297	0	ENST00000265433.3:c.1411G>A	p.Glu471Lys	p.E471K	ENST00000265433	NM_002485.4	471	Gaa/Aaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535352	66535352	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368790458		P-0078330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	257	433	0	ENST00000273854.3:c.109C>T	p.Arg37Trp	p.R37W	ENST00000273854	NM_004439.5	37	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	271	506	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863224683		P-0078330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	275	488	1	ENST00000269305.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000269305	NM_001126112.2	130	Ctc/Ttc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372130	45372131	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	15	427	0	ENST00000262160.6:c.1038dup	p.Ala347CysfsTer2	p.A347Cfs*2	ENST00000262160	NM_005901.5	346	-/T																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200691	128200691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	55	411	0	ENST00000341105.2:c.1114G>A	p.Ala372Thr	p.A372T	ENST00000341105	NM_032638.4	372	Gcc/Acc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249501	153249501	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	243	502	0	ENST00000281708.4:c.1277C>A	p.Ser426Ter	p.S426*	ENST00000281708	NM_033632.3	426	tCa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112103005	112103005	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	258	476	0	ENST00000257430.4:c.341del	p.Pro114LeufsTer11	p.P114Lfs*11	ENST00000257430	NM_000038.5	114	Cct/ct																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8492962	8492962	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	134	347	1	ENST00000356435.5:c.2367del	p.Leu790SerfsTer41	p.L790Sfs*41	ENST00000356435		789	ggG/gg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs193920894		P-0078334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	253	453	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913399		P-0078334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	295	468	0	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga																																																																															
AKT3	10000	MSKCC	GRCh37	1	243859016	243859016	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs397514606		P-0078334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	101	350	0	ENST00000263826.5:c.49G>A	p.Glu17Lys	p.E17K	ENST00000263826	NM_005465.4	17	Gaa/Aaa																																																																															
PARP1	142	MSKCC	GRCh37	1	226551701	226551701	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866456432		P-0078334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	228	486	1	ENST00000366794.5:c.2729C>T	p.Thr910Met	p.T910M	ENST00000366794	NM_001618.3	910	aCg/aTg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575412	64575412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			751	406	575	0	ENST00000337652.1:c.620G>A	p.Gly207Asp	p.G207D	ENST00000337652	NM_130803.2	207	gGc/gAc																																																																															
CCND1	595	MSKCC	GRCh37	11	69465965	69465973	+	inframe_deletion	In_Frame_Del	DEL	CCAAGGCCG	CCAAGGCCG	-			P-0078334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			736	360	567	0	ENST00000227507.2:c.805_813del	p.Lys269_Ala271del	p.K269_A271del	ENST00000227507	NM_053056.2	268	cCCAAGGCCGcc/ccc																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913351		P-0078349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	16	299	0	ENST00000288602.6:c.1397G>A	p.Gly466Glu	p.G466E	ENST00000288602	NM_004333.4	466	gGa/gAa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98215779	98215779	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	51	280	0	ENST00000331920.6:c.3430G>C	p.Glu1144Gln	p.E1144Q	ENST00000331920	NM_000264.3	1144	Gag/Cag																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432040	121432040	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	35	384	0	ENST00000257555.6:c.787C>A	p.Arg263Ser	p.R263S	ENST00000257555		263	Cgt/Agt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104749	69104749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	37	341	0	ENST00000288368.4:c.4593C>A	p.Ser1531Arg	p.S1531R	ENST00000288368	NM_024870.2	1531	agC/agA																																																																															
REST	5978	MSKCC	GRCh37	4	57797555	57797555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	36	436	0	ENST00000309042.7:c.2531C>T	p.Pro844Leu	p.P844L	ENST00000309042	NM_005612.4	844	cCt/cTt																																																																															
WT1	7490	MSKCC	GRCh37	11	32450141	32450142	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0078349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	43	367	0	ENST00000332351.3:c.670_671delinsTT	p.Gly224Leu	p.G224L	ENST00000332351	NM_024426.4	224	GGg/TTg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178611	32178611	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	39	363	0	ENST00000375023.3:c.2783A>T	p.Gln928Leu	p.Q928L	ENST00000375023	NM_004557.3	928	cAg/cTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11319340	11319340	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	32	371	0	ENST00000361445.4:c.127G>T	p.Glu43Ter	p.E43*	ENST00000361445	NM_004958.3	43	Gag/Tag																																																																															
ABL1	25	MSKCC	GRCh37	9	133738363	133738363	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	65	348	0	ENST00000318560.5:c.763G>T	p.Glu255Ter	p.E255*	ENST00000318560	NM_005157.4	255	Gag/Tag																																																																															
MYC	4609	MSKCC	GRCh37	8	128753197	128753197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	61	257	0	ENST00000377970.2:c.1358G>A	p.Cys453Tyr	p.C453Y	ENST00000377970	NM_002467.4	453	tGt/tAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42799110	42799110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	28	356	0	ENST00000575354.2:c.4594G>A	p.Glu1532Lys	p.E1532K	ENST00000575354	NM_015125.3	1532	Gag/Aag																																																																															
BARD1	580	MSKCC	GRCh37	2	215646160	215646160	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	26	268	0	ENST00000260947.4:c.438G>C	p.Trp146Cys	p.W146C	ENST00000260947	NM_000465.2	146	tgG/tgC																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100169	27100178	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCTACCC	GCCGCTACCC	-			P-0078349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	50	408	0	ENST00000324856.7:c.3965_3974del	p.Ser1322ThrfsTer156	p.S1322Tfs*156	ENST00000324856	NM_006015.4	1322	aGCCGCTACCCc/ac																																																																															
BTK	695	MSKCC	GRCh37	X	100614298	100614298	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	26	246	1	ENST00000308731.7:c.877C>A	p.Gln293Lys	p.Q293K	ENST00000308731	NM_000061.2	293	Caa/Aaa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123217306	123217306	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs768937075		P-0078349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	20	323	0	ENST00000218089.9:c.2960C>A	p.Pro987Gln	p.P987Q	ENST00000218089	NM_001042749.1	987	cCg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214740	36214740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	32	300	0	ENST00000222270.7:c.3166G>A	p.Glu1056Lys	p.E1056K	ENST00000222270	NM_014727.1	1056	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256265	16256265	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	40	424	0	ENST00000375759.3:c.3530G>C	p.Arg1177Pro	p.R1177P	ENST00000375759	NM_015001.2	1177	cGt/cCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578463	+	missense_variant	Missense_Mutation	ONP	CGC	CGC	AGA			P-0078349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	56	404	1	ENST00000269305.4:c.467_469delinsTCT	p.Arg156_Val157delinsLeuPhe	p.R156_V157delinsLF	ENST00000269305	NM_001126112.2	156	cGCGtc/cTCTtc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0078362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			395	73	292	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0078362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	67	406	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
APLNR	187	MSKCC	GRCh37	11	57003782	57003782	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs200672348		P-0078362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			386	42	423	0	ENST00000257254.3:c.697C>T	p.Arg233Cys	p.R233C	ENST00000257254		233	Cgc/Tgc																																																																															
MPL	4352	MSKCC	GRCh37	1	43803532	43803532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1356606287		P-0078362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			443	47	428	0	ENST00000372470.3:c.13G>A	p.Ala5Thr	p.A5T	ENST00000372470	NM_005373.2	5	Gcc/Acc																																																																															
SDHA	6389	MSKCC	GRCh37	5	231014	231016	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0078362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			387	23	326	0	ENST00000264932.6:c.796_798del	p.Cys266del	p.C266del	ENST00000264932	NM_004168.2	265	aGCTgc/agc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720843	89720843	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	20	124	0	ENST00000371953.3:c.996del	p.Ala333ProfsTer11	p.A333Pfs*11	ENST00000371953	NM_000314.4	332	Aaa/aa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141507	11141507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	46	419	0	ENST00000344626.4:c.3484G>A	p.Gly1162Ser	p.G1162S	ENST00000344626	NM_003072.3	1162	Ggc/Agc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0078377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	60	389	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0078377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	27	341	0				ENST00000310581	NM_198253.2																																																																																	
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0078378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	31	319	0				ENST00000310581	NM_198253.2																																																																																	
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0078378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	56	349	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176631207	176631207	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759976291		P-0078378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	69	376	0	ENST00000439151.2:c.1150G>A	p.Val384Ile	p.V384I	ENST00000439151	NM_022455.4	384	Gtc/Atc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0078378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	74	262	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960111	134960111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	47	404	0	ENST00000398015.3:c.2468G>T	p.Arg823Ile	p.R823I	ENST00000398015	NM_004441.4	823	aGa/aTa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581234	48581234	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767332		P-0078393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	150	417	0	ENST00000342988.3:c.538C>T	p.Gln180Ter	p.Q180*	ENST00000342988	NM_005359.5	180	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0078393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	97	226	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578551	7578552	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0078393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	139	358	0	ENST00000269305.4:c.377_378dup	p.Ser127ThrfsTer44	p.S127Tfs*44	ENST00000269305	NM_001126112.2	126	-/AC																																																																															
STK40	83931	MSKCC	GRCh37	1	36819978	36819978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	45	293	0	ENST00000373129.3:c.610G>A	p.Val204Met	p.V204M	ENST00000373129	NM_032017.1	204	Gtg/Atg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	16	384	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																															
APC	324	MSKCC	GRCh37	5	112137081	112137081	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0078396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	24	254	0	ENST00000257430.4:c.834+1G>A		p.X278_splice	ENST00000257430	NM_000038.5	278																																																																																
ATM	472	MSKCC	GRCh37	11	108205807	108205807	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782719		P-0078396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	41	327	0	ENST00000278616.4:c.8122G>A	p.Asp2708Asn	p.D2708N	ENST00000278616	NM_000051.3	2708	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112175438	112175439	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0078396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	79	404	0	ENST00000257430.4:c.4147_4148del	p.Met1383ValfsTer2	p.M1383Vfs*2	ENST00000257430	NM_000038.5	1383	ATg/g																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660045		P-0078396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	85	400	0	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910617	29910617	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	39	487	0	ENST00000376809.5:c.157G>T	p.Asp53Tyr	p.D53Y	ENST00000376809	NM_002116.7	53	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0078396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	26	293	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981124	201981124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745722163		P-0078396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	90	413	0	ENST00000359651.3:c.203C>T	p.Ser68Leu	p.S68L	ENST00000359651		68	tCg/tTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151848660	151848660	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	28	318	0	ENST00000262189.6:c.12533C>A	p.Ser4178Tyr	p.S4178Y	ENST00000262189	NM_170606.2	4178	tCt/tAt																																																																															
ATM	472	MSKCC	GRCh37	11	108188193	108188193	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	40	300	0	ENST00000278616.4:c.6292del	p.Leu2098PhefsTer22	p.L2098Ffs*22	ENST00000278616	NM_000051.3	2098	Ctt/tt																																																																															
KLF5	688	MSKCC	GRCh37	13	73636641	73636641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	121	539	0	ENST00000377687.4:c.904C>T	p.Pro302Ser	p.P302S	ENST00000377687	NM_001730.3	302	Ccg/Tcg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133806	55133806	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77524207		P-0078404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	107	434	0	ENST00000257290.5:c.1019G>A	p.Arg340Gln	p.R340Q	ENST00000257290	NM_006206.4	340	cGg/cAg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161352	55161352	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138036141		P-0078404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	62	424	0	ENST00000257290.5:c.3183G>C	p.Lys1061Asn	p.K1061N	ENST00000257290	NM_006206.4	1061	aaG/aaC																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118362641	118362641	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0078404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	44	340	0	ENST00000534358.1:c.5002C>T	p.Gln1668Ter	p.Q1668*	ENST00000534358	NM_005933.3	1668	Cag/Tag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12044576	12044576	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0078404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	49	358	0	ENST00000353533.5:c.1199G>C	p.Ter400SerextTer8	p.*400Sext*8	ENST00000353533	NM_003010.3	400	tGa/tCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0078404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			64	226	290	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139820216	139820216	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	77	508	0	ENST00000247668.2:c.1369C>T	p.Gln457Ter	p.Q457*	ENST00000247668	NM_021138.3	457	Cag/Tag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118362624	118362624	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	47	388	0	ENST00000534358.1:c.4985A>G	p.His1662Arg	p.H1662R	ENST00000534358	NM_005933.3	1662	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577557	7577565	+	inframe_deletion	In_Frame_Del	DEL	AGGAACTGT	AGGAACTGT	-			P-0078404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			81	127	409	0	ENST00000269305.4:c.716_724del	p.Asn239_Cys242delinsSer	p.N239_C242delinsS	ENST00000269305	NM_001126112.2	239	aACAGTTCCTgc/agc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039692	47039692	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	158	236	0	ENST00000329236.7:c.910G>C	p.Ala304Pro	p.A304P	ENST00000329236	NM_001204466.1	304	Gcc/Ccc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62316943	62316943	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	G			P-0078404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	165	529	0	ENST00000482936.1:c.1259C>G	p.Ser420Cys	p.S420C	ENST00000482936		420	tCc/tGc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864648	57864648	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1339134061		P-0078404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	244	580	0	ENST00000228682.2:c.2125G>T	p.Val709Phe	p.V709F	ENST00000228682	NM_005269.2	709	Gtt/Ttt																																																																															
STK40	83931	MSKCC	GRCh37	1	36823935	36823935	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1227163118		P-0078404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	62	391	0	ENST00000373129.3:c.247G>A	p.Glu83Lys	p.E83K	ENST00000373129	NM_032017.1	83	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198270157	198270157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078404-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	107	373	0	ENST00000335508.6:c.1279C>T	p.Pro427Ser	p.P427S	ENST00000335508	NM_012433.2	427	Cca/Tca																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028618	12028618	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	125	300	0	ENST00000353533.5:c.821G>C	p.Arg274Thr	p.R274T	ENST00000353533	NM_003010.3	274	aGa/aCa																																																																															
CDK8	1024	MSKCC	GRCh37	13	26828827	26828827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	107	383	0	ENST00000381527.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000381527	NM_001260.1	17	Gag/Aag																																																																															
TOP1	7150	MSKCC	GRCh37	20	39744053	39744053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	145	315	0	ENST00000361337.2:c.1681G>A	p.Glu561Lys	p.E561K	ENST00000361337	NM_003286.2	561	Gag/Aag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910435	32910435	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs886040398		P-0078405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	161	311	0	ENST00000380152.3:c.1943C>T	p.Ser648Leu	p.S648L	ENST00000380152		648	tCa/tTa																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0078408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	24	325	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0078408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			837	18	472	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0078421-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			956	691	389	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0078421-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			493	32	315	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112176375	112176375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078421-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			601	22	0	0	ENST00000257430.4:c.5084G>A	p.Arg1695Lys	p.R1695K	ENST00000257430	NM_000038.5	1695	aGa/aAa																																																																															
MAX	4149	MSKCC	GRCh37	14	65544729	65544729	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078421-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			585	47	377	0	ENST00000358664.4:c.197A>G	p.Lys66Arg	p.K66R	ENST00000358664	NM_002382.4	66	aAa/aGa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098895	47098895	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078421-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			637	38	402	0	ENST00000409792.3:c.6379C>G	p.Gln2127Glu	p.Q2127E	ENST00000409792	NM_014159.6	2127	Caa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078424-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			92	261	357	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175958517	175958517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078424-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			461	126	352	0	ENST00000367669.3:c.1828G>A	p.Gly610Ser	p.G610S	ENST00000367669	NM_022457.5	610	Ggt/Agt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022613	31022613	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078424-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			177	465	491	0	ENST00000375687.4:c.2098T>G	p.Tyr700Asp	p.Y700D	ENST00000375687	NM_015338.5	700	Tat/Gat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164480	47164502	+	frameshift_variant	Frame_Shift_Del	DEL	TCATGCTTAGAATATGATGACCC	TCATGCTTAGAATATGATGACCC	-			P-0078424-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			152	429	421	0	ENST00000409792.3:c.1624_1646del	p.Gly542GlnfsTer2	p.G542Qfs*2	ENST00000409792	NM_014159.6	542	GGGTCATCATATTCTAAGCATGAc/c																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0078426-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			488	104	387	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255092	16255093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078426-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			490	59	491	0	ENST00000375759.3:c.2363dup	p.Asn788LysfsTer2	p.N788Kfs*2	ENST00000375759	NM_015001.2	786	aca/acAa																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0078432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	263	393	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	165	361	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459758	149459758	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1029057991		P-0078432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	241	411	0	ENST00000286301.3:c.449G>A	p.Arg150His	p.R150H	ENST00000286301	NM_005211.3	150	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G	rs587782272		P-0078432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	218	253	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0078432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	189	241	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371809	55371809	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	143	275	0	ENST00000297316.4:c.499C>A	p.Leu167Met	p.L167M	ENST00000297316	NM_022454.3	167	Ctg/Atg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542620	187542620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	107	353	0	ENST00000441802.2:c.5120G>A	p.Gly1707Asp	p.G1707D	ENST00000441802	NM_005245.3	1707	gGt/gAt																																																																															
KDR	3791	MSKCC	GRCh37	4	55979530	55979530	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs575803378		P-0078432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	93	321	0	ENST00000263923.4:c.917C>T	p.Thr306Ile	p.T306I	ENST00000263923	NM_002253.2	306	aCc/aTc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435888	110435888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078432-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			812	227	316	0	ENST00000375856.3:c.2513G>A	p.Arg838His	p.R838H	ENST00000375856	NM_003749.2	838	cGt/cAt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339111	65339111	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	62	345	5	ENST00000342505.4:c.425del	p.Lys142ArgfsTer26	p.K142Rfs*26	ENST00000342505	NM_002227.2	142	aAg/ag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64132896	64132896	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	169	334	0	ENST00000334205.4:c.1034del	p.Pro345LeufsTer30	p.P345Lfs*30	ENST00000334205	NM_003942.2	344	Ccc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	73	166	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	188	373	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993912	72993912	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1187392987		P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	184	310	0	ENST00000268489.5:c.133G>A	p.Glu45Lys	p.E45K	ENST00000268489	NM_006885.3	45	Gag/Aag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	208	417	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740438	58740439	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1412190904		P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	42	272	0	ENST00000305921.3:c.1349dup	p.Leu450PhefsTer6	p.L450Ffs*6	ENST00000305921	NM_003620.3	448	aat/aaTt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120043	70120043	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	192	241	0	ENST00000245479.2:c.1049del	p.Pro350HisfsTer33	p.P350Hfs*33	ENST00000245479	NM_000346.3	349	Ccc/cc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56390280	56390280	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs768976640		P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	52	211	0	ENST00000348428.3:c.1019C>T	p.Ala340Val	p.A340V	ENST00000348428	NM_006785.3	340	gCg/gTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250767	10250767	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780156714		P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	146	251	0	ENST00000340748.4:c.3713G>A	p.Arg1238His	p.R1238H	ENST00000340748		1238	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211082	36211082	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	178	346	0	ENST00000222270.7:c.837del	p.Arg280GlyfsTer25	p.R280Gfs*25	ENST00000222270	NM_014727.1	278	aCc/ac																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919734	50919734	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs878854545		P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	55	327	0	ENST00000440232.2:c.2902C>T	p.Arg968Cys	p.R968C	ENST00000440232	NM_002691.3	968	Cgc/Tgc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519947		P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	44	270	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661663	227661664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761880048		P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	121	314	2	ENST00000305123.5:c.1791dup	p.His598AlafsTer13	p.H598Afs*13	ENST00000305123	NM_005544.2	597	-/G																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	182	338	0	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
APC	324	MSKCC	GRCh37	5	112174110	112174110	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	102	302	0	ENST00000257430.4:c.2819C>A	p.Ser940Ter	p.S940*	ENST00000257430	NM_000038.5	940	tCg/tAg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497215	149497215	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748918501		P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	147	225	0	ENST00000261799.4:c.3103G>A	p.Glu1035Lys	p.E1035K	ENST00000261799	NM_002609.3	1035	Gag/Aag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	60	278	1	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38967267	38967267	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	113	244	0	ENST00000357387.3:c.1214del	p.Leu405Ter	p.L405*	ENST00000357387	NM_152756.3	405	tTa/ta																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552783	106552783	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs994974998		P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	175	300	0	ENST00000369096.4:c.748G>A	p.Val250Met	p.V250M	ENST00000369096	NM_001198.3	250	Gtg/Atg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157525059	157525059	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	15	275	0	ENST00000346085.5:c.4954A>G	p.Thr1652Ala	p.T1652A	ENST00000346085	NM_020732.3	1652	Acg/Gcg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87636210	87636210	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs957713208		P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	172	282	0	ENST00000277120.3:c.2375G>A	p.Arg792His	p.R792H	ENST00000277120		792	cGc/cAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	160	324	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9776078	9776078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	154	276	0	ENST00000377346.4:c.542G>A	p.Gly181Asp	p.G181D	ENST00000377346	NM_005026.3	181	gGt/gAt																																																																															
CBL	867	MSKCC	GRCh37	11	119144648	119144648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	171	283	0	ENST00000264033.4:c.661G>A	p.Ala221Thr	p.A221T	ENST00000264033	NM_005188.3	221	Gcc/Acc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112891024	112891024	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	45	218	0	ENST00000351677.2:c.358A>T	p.Lys120Ter	p.K120*	ENST00000351677	NM_002834.3	120	Aaa/Taa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46240707	46240707	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	17	225	0	ENST00000334344.6:c.1567T>C	p.Phe523Leu	p.F523L	ENST00000334344	NM_152641.2	523	Ttt/Ctt																																																																															
MGA	23269	MSKCC	GRCh37	15	42052651	42052651	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	154	298	0	ENST00000219905.7:c.7322A>T	p.Asp2441Val	p.D2441V	ENST00000219905	NM_001164273.1	2441	gAt/gTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923806	72923806	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	48	259	0	ENST00000268489.5:c.3272T>C	p.Val1091Ala	p.V1091A	ENST00000268489	NM_006885.3	1091	gTt/gCt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246209	41246209	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	106	272	0	ENST00000357654.3:c.1339G>T	p.Val447Phe	p.V447F	ENST00000357654	NM_007294.3	447	Gtt/Ttt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271515	15271515	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	160	329	0	ENST00000263388.2:c.6924del	p.Gln2310SerfsTer19	p.Q2310Sfs*19	ENST00000263388	NM_000435.2	2308	ggG/gg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976484	18976484	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	27	299	0	ENST00000262803.5:c.3134C>A	p.Ala1045Glu	p.A1045E	ENST00000262803	NM_002911.3	1045	gCg/gAg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2202770	2202770	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	57	277	0	ENST00000398665.3:c.779T>C	p.Met260Thr	p.M260T	ENST00000398665	NM_032482.2	260	aTg/aCg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228163	36228163	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1057519285		P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	200	334	0	ENST00000222270.7:c.7549C>T	p.Arg2517Trp	p.R2517W	ENST00000222270	NM_014727.1	2517	Cgg/Tgg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624820	9624820	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	28	306	0	ENST00000353224.5:c.157A>G	p.Met53Val	p.M53V	ENST00000353224	NM_177990.2	53	Atg/Gtg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732919	30732919	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	152	241	0	ENST00000359013.4:c.1607A>C	p.Gln536Pro	p.Q536P	ENST00000359013	NM_001024847.2	536	cAg/cCg																																																																															
APC	324	MSKCC	GRCh37	5	112175622	112175623	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	182	337	0	ENST00000257430.4:c.4332_4333del	p.Gln1444HisfsTer10	p.Q1444Hfs*10	ENST00000257430	NM_000038.5	1444	cAA/c																																																																															
RAD50	10111	MSKCC	GRCh37	5	131925426	131925426	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	93	231	0	ENST00000265335.6:c.1349T>C	p.Leu450Pro	p.L450P	ENST00000265335		450	cTa/cCa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324928	31324929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	156	293	0	ENST00000412585.2:c.7dup	p.Val3GlyfsTer96	p.V3Gfs*96	ENST00000412585	NM_005514.6	3	gtc/gGtc																																																																															
LYN	4067	MSKCC	GRCh37	8	56912012	56912012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	21	241	0	ENST00000519728.1:c.1240G>A	p.Ala414Thr	p.A414T	ENST00000519728	NM_002350.3	414	Gca/Aca																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152860121	152860121	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782206940		P-0078434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	137	250	0	ENST00000406277.2:c.307G>A	p.Gly103Ser	p.G103S	ENST00000406277	NM_152274.4	103	Ggt/Agt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685270	89685271	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0078442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	147	275	0	ENST00000371953.3:c.170dup	p.Leu57PhefsTer6	p.L57Ffs*6	ENST00000371953	NM_000314.4	55	-/T																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911684	32911687	+	frameshift_variant	Frame_Shift_Del	DEL	AATT	AATT	-	rs80359375		P-0078442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			14	275	419	0	ENST00000380152.3:c.3195_3198del	p.Asn1066LeufsTer10	p.N1066Lfs*10	ENST00000380152		1064	tcAATT/tc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061178	38061195	+	inframe_deletion	In_Frame_Del	DEL	GCTTCTCGCACTTGAAGC	GCTTCTCGCACTTGAAGC	-			P-0078442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	267	477	0	ENST00000250448.2:c.794_811del	p.Arg265_Lys270del	p.R265_K270del	ENST00000250448	NM_004496.3	265	cGCTTCAAGTGCGAGAAGCag/cag																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631837	90631837	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	259	640	0	ENST00000330062.3:c.516G>T	p.Arg172Ser	p.R172S	ENST00000330062	NM_002168.2	172	agG/agT																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692937	89692937	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1060500129		P-0078442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			61	215	491	0	ENST00000371953.3:c.421C>G	p.His141Asp	p.H141D	ENST00000371953	NM_000314.4	141	Cat/Gat																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120846	115120853	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCCGCC	GCGCCGCC	-			P-0078442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	244	481	0	ENST00000257566.3:c.153_160del	p.Ala52LeufsTer56	p.A52Lfs*56	ENST00000257566	NM_016569.3	51	gcGGCGGCGCtc/gctc																																																																															
SCG5	6447	MSKCC	GRCh37	15	32983954	32983954	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370848173		P-0078442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	23	408	0	ENST00000300175.4:c.533G>A	p.Arg178Gln	p.R178Q	ENST00000300175	NM_001144757.1	178	cGa/cAa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023263	31023267	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAC	AGAAC	-			P-0078442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	279	540	0	ENST00000375687.4:c.2749_2753del	p.Glu917HisfsTer5	p.E917Hfs*5	ENST00000375687	NM_015338.5	916	agAGAACac/agac																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680071	30680071	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	267	632	0	ENST00000376406.3:c.1648C>G	p.Gln550Glu	p.Q550E	ENST00000376406	NM_014641.2	550	Caa/Gaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101267	27101268	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0078461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	71	475	1	ENST00000324856.7:c.4555dup	p.Gln1519ProfsTer13	p.Q1519Pfs*13	ENST00000324856	NM_006015.4	1517	gcc/gCcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0078461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	42	265	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216748	7216748	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0078461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	77	461	0	ENST00000380728.2:c.675del	p.Gln226SerfsTer119	p.Q226Sfs*119	ENST00000380728		225	ccA/cc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732996	30732996	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	98	442	0	ENST00000359013.4:c.1684C>G	p.Arg562Gly	p.R562G	ENST00000359013	NM_001024847.2	562	Cgc/Ggc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133821	41133821	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	75	449	0	ENST00000379561.5:c.1807G>T	p.Asp603Tyr	p.D603Y	ENST00000379561	NM_002015.3	603	Gat/Tat																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430890	78430890	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0078464-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	173	299	0	ENST00000370768.2:c.499del	p.Ile167LeufsTer25	p.I167Lfs*25	ENST00000370768	NM_003902.3	167	Att/tt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435099	18435099	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078464-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	175	326	0	ENST00000266497.5:c.84T>G	p.Asn28Lys	p.N28K	ENST00000266497		28	aaT/aaG																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805548	32805548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763454543		P-0078498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	72	458	0	ENST00000374899.4:c.463G>A	p.Ala155Thr	p.A155T	ENST00000374899	NM_018833.2	155	Gcc/Acc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217257	7217258	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0078501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	38	406	0	ENST00000380728.2:c.447_448del	p.Arg149SerfsTer56	p.R149Sfs*56	ENST00000380728		149	agAGcc/agcc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929438	44929438	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			36	36	231	0	ENST00000377967.4:c.2540del	p.Pro847LeufsTer20	p.P847Lfs*20	ENST00000377967	NM_021140.2	846	agC/ag																																																																															
RB1	5925	MSKCC	GRCh37	13	49037930	49037930	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	17	246	0	ENST00000267163.4:c.2170A>G	p.Ile724Val	p.I724V	ENST00000267163	NM_000321.2	724	Att/Gtt																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805988	32805988	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	40	472	0	ENST00000374899.4:c.23C>G	p.Pro8Arg	p.P8R	ENST00000374899	NM_018833.2	8	cCc/cGc																																																																															
RAC2	5880	MSKCC	GRCh37	22	37622732	37622732	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1489649391		P-0078503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	251	391	0	ENST00000249071.6:c.560G>A	p.Arg187His	p.R187H	ENST00000249071	NM_002872.4	187	cGc/cAc																																																																															
ERF	2077	MSKCC	GRCh37	19	42754547	42754547	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1479656985		P-0078503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	338	554	0	ENST00000222329.4:c.193C>T	p.Arg65Trp	p.R65W	ENST00000222329	NM_006494.2	65	Cgg/Tgg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117686313	117686318	+	inframe_deletion	In_Frame_Del	DEL	GTTCCA	GTTCCA	-			P-0078503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	211	412	0	ENST00000368508.3:c.3023_3028del	p.Leu1008_Glu1009del	p.L1008_E1009del	ENST00000368508	NM_002944.2	1008	cTGGAACct/cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7579468	7579469	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	T			P-0078503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	353	617	0	ENST00000269305.4:c.218_219delinsA	p.Val73GlufsTer50	p.V73Efs*50	ENST00000269305	NM_001126112.2	73	gTG/gA																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119791	70119791	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	13	329	0	ENST00000245479.2:c.793C>T	p.Gln265Ter	p.Q265*	ENST00000245479	NM_000346.3	265	Cag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108153608	108153608	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0078504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	55	178	0	ENST00000278616.4:c.3746+2T>C		p.X1249_splice	ENST00000278616	NM_000051.3	1249																																																																																
PDGFRB	5159	MSKCC	GRCh37	5	149515138	149515138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	23	371	0	ENST00000261799.4:c.344G>T	p.Arg115Leu	p.R115L	ENST00000261799	NM_002609.3	115	cGg/cTg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31386405	31386405	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775688885		P-0078504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	17	350	0	ENST00000328111.2:c.1630G>A	p.Val544Met	p.V544M	ENST00000328111	NM_006892.3	544	Gtg/Atg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981213	201981213	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	35	436	0	ENST00000359651.3:c.292G>C	p.Asp98His	p.D98H	ENST00000359651		98	Gat/Cat																																																																															
ATM	472	MSKCC	GRCh37	11	108196125	108196125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	48	268	0	ENST00000278616.4:c.6661G>A	p.Glu2221Lys	p.E2221K	ENST00000278616	NM_000051.3	2221	Gag/Aag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138128	64138128	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764701644		P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	21	418	0	ENST00000334205.4:c.2051C>T	p.Pro684Leu	p.P684L	ENST00000334205	NM_003942.2	684	cCg/cTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57857538	57857538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	30	425	0	ENST00000228682.2:c.64C>T	p.Leu22Phe	p.L22F	ENST00000228682	NM_005269.2	22	Ctc/Ttc																																																																															
MGA	23269	MSKCC	GRCh37	15	41991294	41991294	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	10	316	0	ENST00000219905.7:c.2125G>T	p.Glu709Ter	p.E709*	ENST00000219905	NM_001164273.1	709	Gaa/Taa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89858341	89858341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	15	297	0	ENST00000389301.3:c.1219C>T	p.Leu407Phe	p.L407F	ENST00000389301	NM_000135.2	407	Ctt/Ttt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221992	1221992	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	33	314	0	ENST00000326873.7:c.907A>T	p.Ile303Phe	p.I303F	ENST00000326873	NM_000455.4	303	Atc/Ttc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467421	25467421	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	29	389	0	ENST00000264709.3:c.1655A>G	p.Asn552Ser	p.N552S	ENST00000264709	NM_175629.2	552	aAc/aGc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743943	40743943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs763964405		P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	16	357	0	ENST00000373198.4:c.3052C>T	p.Arg1018Ter	p.R1018*	ENST00000373198	NM_133170.3	1018	Cga/Tga																																																																															
TERT	7015	MSKCC	GRCh37	5	1294342	1294342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	30	409	0	ENST00000310581.5:c.659G>T	p.Gly220Val	p.G220V	ENST00000310581	NM_198253.2	220	gGt/gTt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94128974	94128974	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	23	294	0	ENST00000369303.4:c.86C>A	p.Ala29Asp	p.A29D	ENST00000369303	NM_004440.3	29	gCt/gAt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201980355	201980355	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs764832150		P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	51	465	0	ENST00000359651.3:c.91C>G	p.Pro31Ala	p.P31A	ENST00000359651		31	Cct/Gct																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230468640	230468640	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	21	421	2	ENST00000525115.1:c.1016A>G	p.Asn339Ser	p.N339S	ENST00000525115		339	aAc/aGc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104352377	104352377	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	44	336	0	ENST00000369902.3:c.493A>T	p.Ser165Cys	p.S165C	ENST00000369902	NM_016169.3	165	Agc/Tgc																																																																															
APLNR	187	MSKCC	GRCh37	11	57004385	57004385	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	T			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	25	399	0	ENST00000257254.3:c.94C>A	p.Pro32Thr	p.P32T	ENST00000257254		32	Cct/Act																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483876	88483876	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	15	366	0	ENST00000360948.2:c.1694A>T	p.Asp565Val	p.D565V	ENST00000360948	NM_001012338.2	565	gAc/gTc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244085	41244085	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs80357484		P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	14	395	0	ENST00000357654.3:c.3463G>C	p.Asp1155His	p.D1155H	ENST00000357654	NM_007294.3	1155	Gat/Cat																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244172	41244172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	30	361	0	ENST00000357654.3:c.3376C>A	p.Pro1126Thr	p.P1126T	ENST00000357654	NM_007294.3	1126	Cca/Aca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222847	5222847	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	16	413	0	ENST00000357368.4:c.2956G>C	p.Ala986Pro	p.A986P	ENST00000357368	NM_002850.3	986	Gcg/Ccg																																																																															
REL	5966	MSKCC	GRCh37	2	61149402	61149402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	24	407	0	ENST00000295025.8:c.1592G>C	p.Arg531Thr	p.R531T	ENST00000295025	NM_002908.2	531	aGa/aCa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546997	9546997	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	34	355	0	ENST00000353224.5:c.1025C>G	p.Pro342Arg	p.P342R	ENST00000353224	NM_177990.2	342	cCt/cGt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445072	89445072	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	18	373	0	ENST00000336596.2:c.1392T>A	p.Asn464Lys	p.N464K	ENST00000336596	NM_005233.5	464	aaT/aaA																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523181	176523181	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1291783568		P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	61	553	0	ENST00000292408.4:c.1944+1G>A		p.X648_splice	ENST00000292408	NM_213647.1	648																																																																																
ROS1	6098	MSKCC	GRCh37	6	117662796	117662796	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	18	316	0	ENST00000368508.3:c.4670-1G>T		p.X1557_splice	ENST00000368508	NM_002944.2	1557																																																																																
HIST1H3D	8351	MSKCC	GRCh37	6	26197082	26197082	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	46	455	0	ENST00000356476.2:c.397G>T	p.Gly133Trp	p.G133W	ENST00000356476		133	Ggg/Tgg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508805	106508805	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	27	468	0	ENST00000359195.3:c.799G>C	p.Glu267Gln	p.E267Q	ENST00000359195	NM_002649.2	267	Gaa/Caa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2958151	2958151	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1470160031		P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	21	348	0	ENST00000396946.4:c.2581A>G	p.Thr861Ala	p.T861A	ENST00000396946	NM_032415.4	861	Acc/Gcc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978399	2978400	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	20	352	0	ENST00000396946.4:c.930_931delinsTT	p.Lys310_Glu311delinsAsnTer	p.K310_E311delinsN*	ENST00000396946	NM_032415.4	310	aaGGag/aaTTag																																																																															
HGF	3082	MSKCC	GRCh37	7	81374350	81374350	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	28	287	0	ENST00000222390.5:c.712C>A	p.Gln238Lys	p.Q238K	ENST00000222390	NM_000601.4	238	Cag/Aag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521492	8521492	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	24	328	0	ENST00000356435.5:c.746C>A	p.Pro249Gln	p.P249Q	ENST00000356435		249	cCa/cAa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570295	87570295	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	42	426	0	ENST00000277120.3:c.2035G>T	p.Gly679Cys	p.G679C	ENST00000277120		679	Ggc/Tgc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933551	39933551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	21	279	0	ENST00000378444.4:c.1048G>T	p.Ala350Ser	p.A350S	ENST00000378444	NM_001123385.1	350	Gct/Tct																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0078536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	345	384	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	437	633	1	ENST00000269305.4:c.528C>A	p.Cys176Ter	p.C176*	ENST00000269305	NM_001126112.2	176	tgC/tgA																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119966	70120018	+	frameshift_variant	Frame_Shift_Del	DEL	GCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	GCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	-			P-0078536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	235	503	0	ENST00000245479.2:c.970_1022del	p.Thr324AlafsTer236	p.T324Afs*236	ENST00000245479	NM_000346.3	323	aGCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG/a																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119968	70119968	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	37	514	0	ENST00000245479.2:c.970A>G	p.Thr324Ala	p.T324A	ENST00000245479	NM_000346.3	324	Acc/Gcc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411617	63411617	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0078536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	195	574	0	ENST00000330258.3:c.1550del	p.Asn517ThrfsTer24	p.N517Tfs*24	ENST00000330258	NM_152424.3	517	aAc/ac																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672707	86672707	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	145	365	0	ENST00000274376.6:c.2194C>T	p.Gln732Ter	p.Q732*	ENST00000274376	NM_002890.2	732	Caa/Taa																																																																															
MSI1	4440	MSKCC	GRCh37	12	120791102	120791102	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0078536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	174	490	0	ENST00000257552.2:c.733G>A	p.Glu245Lys	p.E245K	ENST00000257552	NM_002442.3	245	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112164561	112164564	+	frameshift_variant	Frame_Shift_Del	DEL	GAGT	GAGT	-			P-0078536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	150	328	0	ENST00000257430.4:c.1636_1639del	p.Ser546PhefsTer2	p.S546Ffs*2	ENST00000257430	NM_000038.5	545	gcGAGT/gc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0078541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			575	47	478	0				ENST00000310581	NM_198253.2																																																																																	
RHOA	387	MSKCC	GRCh37	3	49412913	49412913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			703	28	480	0	ENST00000418115.1:c.110C>T	p.Thr37Ile	p.T37I	ENST00000418115	NM_001664.2	37	aCa/aTa																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794494	242794494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			753	56	588	0	ENST00000334409.5:c.448G>A	p.Glu150Lys	p.E150K	ENST00000334409	NM_005018.2	150	Gaa/Aaa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61711177	61711177	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			493	46	478	0	ENST00000401558.2:c.2572C>G	p.His858Asp	p.H858D	ENST00000401558	NM_003400.3	858	Cat/Gat																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873835	35873835	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			809	77	340	0	ENST00000216797.5:c.16G>T	p.Glu6Ter	p.E6*	ENST00000216797	NM_020529.2	6	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0078541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			430	44	331	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342828	87342828	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			624	34	538	0	ENST00000277120.3:c.1113G>C	p.Glu371Asp	p.E371D	ENST00000277120		371	gaG/gaC																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972750	25972750	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			588	79	570	0	ENST00000435504.4:c.1675G>C	p.Val559Leu	p.V559L	ENST00000435504		559	Gtt/Ctt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286164	66286164	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			437	32	431	0	ENST00000273854.3:c.1522G>T	p.Glu508Ter	p.E508*	ENST00000273854	NM_004439.5	508	Gaa/Taa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864321	117864321	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			502	28	430	0	ENST00000297338.2:c.1336G>T	p.Glu446Ter	p.E446*	ENST00000297338	NM_006265.2	446	Gaa/Taa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347903	347912	+	frameshift_variant	Frame_Shift_Del	DEL	CGTGTCGGTG	CGTGTCGGTG	-			P-0078541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			826	109	724	0	ENST00000262320.3:c.1594_1603del	p.His532SerfsTer170	p.H532Sfs*170	ENST00000262320	NM_003502.3	532	CACCGACACGtc/tc																																																																															
ATR	545	MSKCC	GRCh37	3	142279109	142279109	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	56	443	0	ENST00000350721.4:c.1537A>T	p.Asn513Tyr	p.N513Y	ENST00000350721	NM_001184.3	513	Aac/Tac																																																																															
CYLD	1540	MSKCC	GRCh37	16	50828318	50828318	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			658	51	526	0	ENST00000398568.2:c.2656G>C	p.Asp886His	p.D886H	ENST00000398568	NM_001042412.1	886	Gac/Cac																																																																															
RAD50	10111	MSKCC	GRCh37	5	131977922	131977922	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876659730		P-0078541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			454	28	447	0	ENST00000265335.6:c.3805C>T	p.His1269Tyr	p.H1269Y	ENST00000265335		1269	Cat/Tat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039657	47039658	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0078541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			304	87	271	0	ENST00000329236.7:c.877_878dup	p.Ile294LeufsTer114	p.I294Lfs*114	ENST00000329236	NM_001204466.1	292	ctc/ctCAc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152415531	152415531	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078544-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			315	192	321	0	ENST00000206249.3:c.1381T>G	p.Phe461Val	p.F461V	ENST00000206249	NM_000125.3	461	Ttt/Gtt																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867723	45867723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078544-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			563	227	506	0	ENST00000391945.4:c.677C>T	p.Ala226Val	p.A226V	ENST00000391945	NM_000400.3	226	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			75	63	324	0	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0078563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	92	408	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589812	69589812	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1158890592		P-0078563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			752	71	705	2	ENST00000168712.1:c.41C>T	p.Ala14Val	p.A14V	ENST00000168712	NM_002007.2	14	gCg/gTg																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182256	38182256	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	44	434	0	ENST00000396334.3:c.692G>T	p.Arg231Leu	p.R231L	ENST00000396334	NM_002468.4	231	cGg/cTg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724843	43724843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	40	422	0	ENST00000382044.4:c.3224G>A	p.Gly1075Glu	p.G1075E	ENST00000382044	NM_001141980.1	1075	gGa/gAa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28913358	28913358	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374468544		P-0078563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	33	377	0	ENST00000282397.4:c.2435G>A	p.Arg812Gln	p.R812Q	ENST00000282397	NM_002019.4	812	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0078563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	49	259	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058731	180058731	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	86	431	0	ENST00000261937.6:c.106G>T	p.Glu36Ter	p.E36*	ENST00000261937	NM_182925.4	36	Gag/Tag																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520206	9520206	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	50	383	0	ENST00000353224.5:c.2063G>C	p.Arg688Thr	p.R688T	ENST00000353224	NM_177990.2	688	aGa/aCa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28891659	28891659	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	30	383	0	ENST00000282397.4:c.3362C>G	p.Ala1121Gly	p.A1121G	ENST00000282397	NM_002019.4	1121	gCt/gGt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922818	44922818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	51	398	0	ENST00000377967.4:c.1679C>T	p.Pro560Leu	p.P560L	ENST00000377967	NM_021140.2	560	cCt/cTt																																																																															
NUF2	83540	MSKCC	GRCh37	1	163307841	163307841	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	54	335	0	ENST00000271452.3:c.467A>G	p.Asn156Ser	p.N156S	ENST00000271452	NM_145697.2	156	aAc/aGc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935609	13935609	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	118	411	0	ENST00000405192.2:c.1247A>T	p.Glu416Val	p.E416V	ENST00000405192	NM_001163147.1	416	gAa/gTa																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423554	47423554	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	31	375	0	ENST00000404338.3:c.1622A>T	p.Asp541Val	p.D541V	ENST00000404338	NM_004491.4	541	gAt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			46	71	674	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
ALK	238	MSKCC	GRCh37	2	30142976	30142976	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1379890469		P-0078564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	40	618	0	ENST00000389048.3:c.550C>T	p.Arg184Ter	p.R184*	ENST00000389048	NM_004304.4	184	Cga/Tga																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876472	35876472	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			63	59	553	0	ENST00000303115.3:c.1264C>T	p.Gln422Ter	p.Q422*	ENST00000303115	NM_002185.3	422	Caa/Taa																																																																															
TERT	7015	MSKCC	GRCh37	5	1293746	1293746	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	73	625	0	ENST00000310581.5:c.1255G>C	p.Val419Leu	p.V419L	ENST00000310581	NM_198253.2	419	Gtc/Ctc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061190	38061190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	140	518	1	ENST00000250448.2:c.799A>G	p.Lys267Glu	p.K267E	ENST00000250448	NM_004496.3	267	Aag/Gag																																																																															
RET	5979	MSKCC	GRCh37	10	43606872	43606872	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			62	56	703	0	ENST00000355710.3:c.1481G>T	p.Arg494Met	p.R494M	ENST00000355710	NM_020975.4	494	aGg/aTg																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154429	2154429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	26	576	0	ENST00000434045.2:c.499G>T	p.Gly167Cys	p.G167C	ENST00000434045	NM_001127598.1	167	Ggc/Tgc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430905	181430905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	31	639	0	ENST00000325404.1:c.757C>T	p.Pro253Ser	p.P253S	ENST00000325404	NM_003106.3	253	Cct/Tct																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63700161	63700161	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			30	63	368	0	ENST00000279873.7:c.496G>C	p.Asp166His	p.D166H	ENST00000279873	NM_032199.2	166	Gac/Cac																																																																															
POLE	5426	MSKCC	GRCh37	12	133249274	133249274	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	36	545	0	ENST00000320574.5:c.1625G>T	p.Gly542Val	p.G542V	ENST00000320574	NM_006231.2	542	gGc/gTc																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117695899	117695899	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	62	477	0	ENST00000369458.3:c.538G>T	p.Val180Phe	p.V180F	ENST00000369458	NM_024626.3	180	Gtc/Ttc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44928891	44928891	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs770808200		P-0078564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			46	54	381	0	ENST00000377967.4:c.1991G>T	p.Gly664Val	p.G664V	ENST00000377967	NM_021140.2	664	gGg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0078565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	46	358	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
ATR	545	MSKCC	GRCh37	3	142232363	142232363	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	45	418	0	ENST00000350721.4:c.4621A>T	p.Asn1541Tyr	p.N1541Y	ENST00000350721	NM_001184.3	1541	Aat/Tat																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145124	58145124	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0078579-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	164	342	0	ENST00000257904.6:c.220C>G	p.Leu74Val	p.L74V	ENST00000257904	NM_000075.3	74	Ctg/Gtg																																																																															
ATM	472	MSKCC	GRCh37	11	108123547	108123547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0078579-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	194	195	0	ENST00000278616.4:c.1809del	p.Pro604LeufsTer10	p.P604Lfs*10	ENST00000278616	NM_000051.3	602	aaT/aa																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743488	46743488	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0078579-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	144	310	0	ENST00000371975.4:c.1870-1G>A		p.X624_splice	ENST00000371975	NM_003579.3	624																																																																																
PIK3CB	5291	MSKCC	GRCh37	3	138456719	138456721	+	missense_variant	Missense_Mutation	ONP	TAA	TAA	CAT			P-0078579-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	53	255	0	ENST00000289153.2:c.629_631delinsATG	p.Phe210_Ser211delinsTyrGly	p.F210_S211delinsYG	ENST00000289153	NM_006219.2	210	tTTAgc/tATGgc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041022	47041022	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078582-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	69	378	0	ENST00000329236.7:c.1318C>T	p.Gln440Ter	p.Q440*	ENST00000329236	NM_001204466.1	440	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627932	187627932	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs187106653		P-0078582-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	103	374	0	ENST00000441802.2:c.3050A>G	p.Tyr1017Cys	p.Y1017C	ENST00000441802	NM_005245.3	1017	tAt/tGt																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84384697	84384697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078582-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	91	211	0	ENST00000321945.7:c.746G>A	p.Arg249Lys	p.R249K	ENST00000321945	NM_139076.2	249	aGa/aAa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742438	145742439	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0078582-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	103	338	0	ENST00000428558.2:c.349dup	p.Leu117ProfsTer20	p.L117Pfs*20	ENST00000428558	NM_004260.3	117	ctg/cCtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242487	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATCTC	AATTAAGAGAAGCAACATCTC	TCT	rs727504282		P-0078582-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	62	287	0	ENST00000275493.2:c.2237_2257delinsTCT	p.Glu746_Pro753delinsValSer	p.E746_P753delinsVS	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCTCcg/gTCTcg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937066	36937066	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs564880597		P-0078601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	166	355	0	ENST00000361632.4:c.1253G>A	p.Arg418His	p.R418H	ENST00000361632		418	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0078601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	130	210	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066936	30066936	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749621467		P-0078601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	163	256	0	ENST00000331968.5:c.2195G>A	p.Arg732Gln	p.R732Q	ENST00000331968	NM_002742.2	732	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578243	7578243	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	235	447	0	ENST00000269305.4:c.606del	p.Val203TrpfsTer44	p.V203Wfs*44	ENST00000269305	NM_001126112.2	202	cgT/cg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0078601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	148	416	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0078601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	160	340	0	ENST00000257430.4:c.4192_4193del	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987388	2987388	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1192456063		P-0078601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	220	341	0	ENST00000396946.4:c.41C>T	p.Thr14Met	p.T14M	ENST00000396946	NM_032415.4	14	aCg/aTg																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50481218	50481218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	183	348	0	ENST00000394963.4:c.604G>A	p.Gly202Arg	p.G202R	ENST00000394963	NM_003076.4	202	Ggg/Agg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245424	153245425	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGTTCC			P-0078601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	307	299	0	ENST00000281708.4:c.1761_1766dup	p.Glu588_Leu589dup	p.E588_L589dup	ENST00000281708	NM_033632.3	588	ctc/ctGGAACTc																																																																															
APC	324	MSKCC	GRCh37	5	112173759	112173759	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0078601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	148	377	0	ENST00000257430.4:c.2468C>G	p.Ser823Ter	p.S823*	ENST00000257430	NM_000038.5	823	tCa/tGa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563311	21563311	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77919685		P-0078602-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	18	457	0	ENST00000382592.4:c.608C>T	p.Ala203Val	p.A203V	ENST00000382592	NM_014572.2	203	gCg/gTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207203	1207203	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0078602-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	95	345	0	ENST00000326873.7:c.290+1G>T		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																																
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0078602-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	130	474	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166385	118166385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145471785		P-0078602-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	20	470	0	ENST00000369448.3:c.895G>A	p.Glu299Lys	p.E299K	ENST00000369448	NM_017709.3	299	Gaa/Aaa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180045890	180045890	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078602-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	41	402	0	ENST00000261937.6:c.2881del	p.Arg961AlafsTer46	p.R961Afs*46	ENST00000261937	NM_182925.4	961	Cgc/gc																																																																															
ID3	3399	MSKCC	GRCh37	1	23885794	23885795	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0078602-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	47	353	0	ENST00000374561.5:c.123_124delinsCT	p.Asp42Tyr	p.D42Y	ENST00000374561	NM_002167.4	41	ctGGac/ctCTac																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63662096	63662096	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078602-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	59	408	0	ENST00000279873.7:c.201del	p.Gln68AsnfsTer35	p.Q68Nfs*35	ENST00000279873	NM_032199.2	67	cGg/cg																																																																															
MGA	23269	MSKCC	GRCh37	15	42003427	42003427	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078602-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	18	413	0	ENST00000219905.7:c.2964G>T	p.Leu988Phe	p.L988F	ENST00000219905	NM_001164273.1	988	ttG/ttT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916624	178916624	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078602-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	330	278	0	ENST00000263967.3:c.11G>C	p.Arg4Pro	p.R4P	ENST00000263967	NM_006218.2	4	cGa/cCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0078603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	230	497	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0078603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	443	486	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0078603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	316	590	0	ENST00000269305.4:c.559+2T>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
SMAD3	4088	MSKCC	GRCh37	15	67477202	67477202	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0078603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	54	477	0	ENST00000327367.4:c.1009G>T	p.Gly337Ter	p.G337*	ENST00000327367	NM_005902.3	337	Gga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0078607-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	228	297	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0078607-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	179	245	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713870	30713870	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078607-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	257	459	0	ENST00000359013.4:c.1272del	p.Leu425PhefsTer31	p.L425Ffs*31	ENST00000359013	NM_001024847.2	424	Ggg/gg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0078613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	146	320	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861838	57861838	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1381253752		P-0078613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	69	395	0	ENST00000228682.2:c.1139G>A	p.Arg380Gln	p.R380Q	ENST00000228682	NM_005269.2	380	cGa/cAa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115955	8115956	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0078613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	85	415	0	ENST00000346208.3:c.1305dup	p.Ser436LeufsTer71	p.S436Lfs*71	ENST00000346208		434	cac/caCc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023868	27023878	+	frameshift_variant	Frame_Shift_Del	DEL	CCGGCAAGGGC	CCGGCAAGGGC	-			P-0078613-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	67	402	0	ENST00000324856.7:c.979_989del	p.Lys327GlyfsTer69	p.K327Gfs*69	ENST00000324856	NM_006015.4	325	gCCGGCAAGGGC/g																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163749	32163749	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	169	349	0	ENST00000375023.3:c.5477A>G	p.Glu1826Gly	p.E1826G	ENST00000375023	NM_004557.3	1826	gAg/gGg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911442	32911443	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	166	307	0	ENST00000380152.3:c.2957dup	p.Asn986LysfsTer2	p.N986Kfs*2	ENST00000380152		984	gaa/gAaa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117687275	117687280	+	inframe_deletion	In_Frame_Del	DEL	ACTGAT	ACTGAT	-			P-0078618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	145	354	0	ENST00000368508.3:c.2771_2776del	p.Asn924_Phe926delinsIle	p.N924_F926delinsI	ENST00000368508	NM_002944.2	924	aATCAGTtc/atc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250422	110250423	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCGCAA			P-0078618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	96	417	0	ENST00000374672.4:c.246_252dup	p.Gly85LeufsTer4	p.G85Lfs*4	ENST00000374672	NM_004235.4	84	-/TTGCGGC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0078622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	118	426	0	ENST00000269305.4:c.560-2A>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0078622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	181	221	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974766	21974766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078622-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	57	364	0	ENST00000304494.5:c.61del	p.Ala21ProfsTer5	p.A21Pfs*5	ENST00000304494	NM_000077.4	21	Gcc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0078623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	25	249	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
CARM1	10498	MSKCC	GRCh37	19	11018790	11018790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	29	240	0	ENST00000327064.4:c.422C>T	p.Thr141Met	p.T141M	ENST00000327064	NM_199141.1	141	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0078623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	35	186	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231367	46231368	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0078623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	34	221	0	ENST00000334344.6:c.1207_1208del	p.Ile403HisfsTer8	p.I403Hfs*8	ENST00000334344	NM_152641.2	403	ATc/c																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0078628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	21	177	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0078631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	133	266	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112175606	112175606	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	73	346	0	ENST00000257430.4:c.4316del	p.Pro1439LeufsTer34	p.P1439Lfs*34	ENST00000257430	NM_000038.5	1439	Cct/ct																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0078631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	36	294	0	ENST00000257430.4:c.4063del	p.Ser1355LeufsTer60	p.S1355Lfs*60	ENST00000257430	NM_000038.5	1354	Ttt/tt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212459	5212459	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182037655		P-0078631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	74	319	0	ENST00000357368.4:c.4658C>T	p.Thr1553Met	p.T1553M	ENST00000357368	NM_002850.3	1553	aCg/aTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902682	50902682	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148040399		P-0078631-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	50	346	0	ENST00000440232.2:c.257C>T	p.Ala86Val	p.A86V	ENST00000440232	NM_002691.3	86	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0078633-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	35	262	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873242	136873242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078633-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	48	375	0	ENST00000241393.3:c.256C>T	p.Leu86Phe	p.L86F	ENST00000241393	NM_003467.2	86	Ctc/Ttc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8105959	8105959	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0078633-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	46	296	0	ENST00000346208.3:c.779G>T	p.Gly260Val	p.G260V	ENST00000346208		260	gGc/gTc																																																																															
REST	5978	MSKCC	GRCh37	4	57796564	57796564	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078633-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	69	280	0	ENST00000309042.7:c.1540A>G	p.Ser514Gly	p.S514G	ENST00000309042	NM_005612.4	514	Agt/Ggt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044977	47044977	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078633-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	45	199	0	ENST00000329236.7:c.2069T>G	p.Phe690Cys	p.F690C	ENST00000329236	NM_001204466.1	690	tTc/tGc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18524191	18524191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078633-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	54	238	0	ENST00000266497.5:c.1703C>T	p.Ala568Val	p.A568V	ENST00000266497		568	gCa/gTa																																																																															
INSR	3643	MSKCC	GRCh37	19	7119497	7119497	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078633-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	45	279	0	ENST00000302850.5:c.3757G>C	p.Gly1253Arg	p.G1253R	ENST00000302850	NM_000208.2	1253	Ggg/Cgg																																																																															
BTK	695	MSKCC	GRCh37	X	100608333	100608333	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1064796809		P-0078633-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	46	121	0	ENST00000308731.7:c.1757T>C	p.Leu586Ser	p.L586S	ENST00000308731	NM_000061.2	586	tTg/tCg																																																																															
ATM	472	MSKCC	GRCh37	11	108216545	108216545	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587779872		P-0078638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	138	212	0	ENST00000278616.4:c.8494C>T	p.Arg2832Cys	p.R2832C	ENST00000278616	NM_000051.3	2832	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0078638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	170	241	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913250		P-0078638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	194	206	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953114	81953114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764736362		P-0078638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	84	255	0	ENST00000359376.3:c.2080C>T	p.Arg694Cys	p.R694C	ENST00000359376	NM_002661.3	694	Cgc/Tgc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771827	135771827	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs118203750		P-0078638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	176	349	0	ENST00000298552.3:c.3290G>A	p.Arg1097His	p.R1097H	ENST00000298552	NM_001162426.1	1097	cGt/cAt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59858268	59858268	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0078638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	257	224	0	ENST00000259008.2:c.1727del	p.Asn576IlefsTer14	p.N576Ifs*14	ENST00000259008	NM_032043.2	576	aAt/at																																																																															
APC	324	MSKCC	GRCh37	5	112174732	112174732	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	142	312	0	ENST00000257430.4:c.3441C>A	p.Tyr1147Ter	p.Y1147*	ENST00000257430	NM_000038.5	1147	taC/taA																																																																															
APC	324	MSKCC	GRCh37	5	112175755	112175756	+	frameshift_variant	Frame_Shift_Ins	INS	AT	AT	TGATACATTTGA			P-0078638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	160	330	0	ENST00000257430.4:c.4464_4465delinsTGATACATTTGA	p.Leu1488PhefsTer29	p.L1488Ffs*29	ENST00000257430	NM_000038.5	1488	ttATta/ttTGATACATTTGAta																																																																															
APC	324	MSKCC	GRCh37	5	112164646	112164646	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	236	346	0	ENST00000257430.4:c.1720G>T	p.Glu574Ter	p.E574*	ENST00000257430	NM_000038.5	574	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175921	112175921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	391	472	0	ENST00000257430.4:c.4630G>T	p.Glu1544Ter	p.E1544*	ENST00000257430	NM_000038.5	1544	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs876660254		P-0078639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	423	536	0	ENST00000269305.4:c.568C>A	p.Pro190Thr	p.P190T	ENST00000269305	NM_001126112.2	190	Cct/Act																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368213	45368213	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	435	335	0	ENST00000262160.6:c.1389C>A	p.Cys463Ter	p.C463*	ENST00000262160	NM_005901.5	463	tgC/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0078639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	202	247	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268224	153268224	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs948701489		P-0078639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	154	252	3	ENST00000281708.4:c.585-1G>T		p.X195_splice	ENST00000281708	NM_033632.3	195																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118344047	118344047	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	343	482	0	ENST00000534358.1:c.2173G>T	p.Gly725Ter	p.G725*	ENST00000534358	NM_005933.3	725	Gga/Tga																																																																															
NUP93	9688	MSKCC	GRCh37	16	56870514	56870514	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0078639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	304	333	0	ENST00000308159.5:c.1784C>A	p.Pro595His	p.P595H	ENST00000308159	NM_014669.4	595	cCt/cAt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473789	67473789	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0078639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	410	312	0	ENST00000327367.4:c.869T>C	p.Ile290Thr	p.I290T	ENST00000327367	NM_005902.3	290	aTc/aCc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68993002	68993002	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	130	305	0	ENST00000288368.4:c.1807T>G	p.Tyr603Asp	p.Y603D	ENST00000288368	NM_024870.2	603	Tat/Gat																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517588	176517588	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			743	53	412	0	ENST00000292408.4:c.289G>T	p.Gly97Cys	p.G97C	ENST00000292408	NM_213647.1	97	Ggc/Tgc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412830	63412830	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	328	213	0	ENST00000330258.3:c.337G>T	p.Gly113Ter	p.G113*	ENST00000330258	NM_152424.3	113	Gga/Tga																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680722	30680722	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	176	427	0	ENST00000376406.3:c.997G>T	p.Ala333Ser	p.A333S	ENST00000376406	NM_014641.2	333	Gcg/Tcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0078651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	51	283	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427521	49427521	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1232636989		P-0078651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	57	483	0	ENST00000301067.7:c.10967G>A	p.Arg3656His	p.R3656H	ENST00000301067	NM_003482.3	3656	cGc/cAc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0078651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	65	333	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	89	444	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911123	29911123	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs199474507		P-0078651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	83	511	0	ENST00000376809.5:c.422C>A	p.Ala141Asp	p.A141D	ENST00000376809	NM_002116.7	141	gCc/gAc																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551958	150551958	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs932863734		P-0078653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			863	53	510	0	ENST00000369026.2:c.49G>A	p.Gly17Arg	p.G17R	ENST00000369026	NM_021960.4	17	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578282	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGAGGAGGG	GCTGAGGAGGG	-			P-0078653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	230	617	0	ENST00000269305.4:c.567_577del	p.Pro190SerfsTer15	p.P190Sfs*15	ENST00000269305	NM_001126112.2	189	gcCCCTCCTCAGCat/gcat																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61323183	61323183	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	33	289	0	ENST00000283752.5:c.881A>T	p.Asp294Val	p.D294V	ENST00000283752	NM_006919.2	294	gAc/gTc																																																																															
CDH1	999	MSKCC	GRCh37	16	68844172	68844172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	128	411	0	ENST00000261769.5:c.760G>A	p.Asp254Asn	p.D254N	ENST00000261769	NM_004360.3	254	Gat/Aat																																																																															
JAK2	3717	MSKCC	GRCh37	9	5123080	5123080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	43	355	0	ENST00000381652.3:c.3136G>A	p.Glu1046Lys	p.E1046K	ENST00000381652	NM_004972.3	1046	Gaa/Aaa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3652140	3652140	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759447034		P-0078654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	80	392	1	ENST00000294008.3:c.929G>A	p.Arg310Gln	p.R310Q	ENST00000294008	NM_032444.2	310	cGa/cAa																																																																															
ATRX	546	MSKCC	GRCh37	X	76855249	76855249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	88	331	0	ENST00000373344.5:c.5738C>T	p.Ser1913Leu	p.S1913L	ENST00000373344	NM_000489.3	1913	tCa/tTa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115440	115115440	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	144	357	0	ENST00000257566.3:c.886A>G	p.Asn296Asp	p.N296D	ENST00000257566	NM_016569.3	296	Aac/Gac																																																																															
ATRX	546	MSKCC	GRCh37	X	76972667	76972667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	41	300	0	ENST00000373344.5:c.74C>T	p.Ser25Leu	p.S25L	ENST00000373344	NM_000489.3	25	tCa/tTa																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790641	89790641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	34	447	0	ENST00000336032.3:c.28G>A	p.Glu10Lys	p.E10K	ENST00000336032	NM_006813.2	10	Gag/Aag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117352	115117384	+	inframe_deletion	In_Frame_Del	DEL	GGGGAACAAGTATGTCCGAAATGTACTATAAGG	GGGGAACAAGTATGTCCGAAATGTACTATAAGG	-			P-0078654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	141	387	0	ENST00000257566.3:c.790_822del	p.Pro264_Pro274del	p.P264_P274del	ENST00000257566	NM_016569.3	264	CCTTATAGTACATTTCGGACATACTTGTTCCCC/-																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466446	120466446	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0078654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	118	463	0	ENST00000256646.2:c.4673T>G	p.Leu1558Arg	p.L1558R	ENST00000256646	NM_024408.3	1558	cTg/cGg																																																																															
USP8	9101	MSKCC	GRCh37	15	50773681	50773681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	35	289	0	ENST00000307179.4:c.1222G>A	p.Asp408Asn	p.D408N	ENST00000307179		408	Gat/Aat																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1961419	1961419	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	48	382	0	ENST00000382895.3:c.3207G>C	p.Lys1069Asn	p.K1069N	ENST00000382895	NM_133330.2	1069	aaG/aaC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425071	49425071	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0078654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	51	507	0	ENST00000301067.7:c.13417C>T	p.Gln4473Ter	p.Q4473*	ENST00000301067	NM_003482.3	4473	Caa/Taa																																																																															
RAD51	5888	MSKCC	GRCh37	15	40990997	40990997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	40	355	0	ENST00000267868.3:c.41C>T	p.Ser14Leu	p.S14L	ENST00000267868	NM_002875.4	14	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0078660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	157	385	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0078660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	77	399	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0078660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	156	482	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173995	112173995	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0078660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	153	388	0	ENST00000257430.4:c.2704G>T	p.Glu902Ter	p.E902*	ENST00000257430	NM_000038.5	902	Gaa/Taa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28601274	28601274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	103	333	0	ENST00000241453.7:c.2158G>A	p.Glu720Lys	p.E720K	ENST00000241453	NM_004119.2	720	Gaa/Aaa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56486587	56486587	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	163	425	0	ENST00000267101.3:c.1166C>A	p.Thr389Lys	p.T389K	ENST00000267101	NM_001982.3	389	aCa/aAa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100050	30100050	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369255115		P-0078660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	113	361	0	ENST00000331968.5:c.1570G>A	p.Val524Ile	p.V524I	ENST00000331968	NM_002742.2	524	Gtt/Att																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0078660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			50	161	223	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ERG	2078	MSKCC	GRCh37	21	39755770	39755770	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	115	400	0	ENST00000288319.7:c.995G>T	p.Trp332Leu	p.W332L	ENST00000288319	NM_182918.3	332	tGg/tTg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21639487	21639487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	22	269	0	ENST00000421138.2:c.427C>T	p.Leu143Phe	p.L143F	ENST00000421138		143	Ctt/Ttt																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748125	72748125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	114	336	0	ENST00000357731.5:c.53C>A	p.Ala18Glu	p.A18E	ENST00000357731	NM_173808.2	18	gCg/gAg																																																																															
MED12	9968	MSKCC	GRCh37	X	70340870	70340870	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	114	396	0	ENST00000374080.3:c.603G>T	p.Met201Ile	p.M201I	ENST00000374080		201	atG/atT																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553563	106553563	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0078660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	168	434	0	ENST00000369096.4:c.1528T>G	p.Cys510Gly	p.C510G	ENST00000369096	NM_001198.3	510	Tgt/Ggt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0078662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	83	282	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168785	56168785	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	75	308	0	ENST00000399503.3:c.1639C>T	p.Gln547Ter	p.Q547*	ENST00000399503	NM_005921.1	547	Cag/Tag																																																																															
CDH1	999	MSKCC	GRCh37	16	68845620	68845621	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0078662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			62	76	307	0	ENST00000261769.5:c.868dup	p.Asp290GlyfsTer3	p.D290Gfs*3	ENST00000261769	NM_004360.3	289	gcg/gcGg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161243	56161243	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	97	264	0	ENST00000399503.3:c.1112C>A	p.Ser371Ter	p.S371*	ENST00000399503	NM_005921.1	371	tCa/tAa																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27777996	27777996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	102	493	0	ENST00000369163.2:c.145C>T	p.Leu49Phe	p.L49F	ENST00000369163	NM_003536.2	49	Ctc/Ttc																																																																															
ATM	472	MSKCC	GRCh37	11	108202208	108202208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs879254136		P-0078662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	66	246	0	ENST00000278616.4:c.7553C>T	p.Pro2518Leu	p.P2518L	ENST00000278616	NM_000051.3	2518	cCt/cTt																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871082	12871083	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0078662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	80	330	0	ENST00000228872.4:c.310dup	p.Gln104ProfsTer21	p.Q104Pfs*21	ENST00000228872	NM_004064.3	103	-/C																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0078663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	61	353	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0078663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	25	233	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0078663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			73	33	220	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946973	71946973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375841975		P-0078663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	53	379	0	ENST00000298229.2:c.2822C>T	p.Thr941Met	p.T941M	ENST00000298229	NM_001567.3	941	aCg/aTg																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs869025608		P-0078668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	71	410	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																															
STK11	6794	MSKCC	GRCh37	19	1220597	1220597	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	68	441	0	ENST00000326873.7:c.616del	p.Ala206ArgfsTer81	p.A206Rfs*81	ENST00000326873	NM_000455.4	205	gcG/gc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230872	66230872	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	49	374	1	ENST00000273854.3:c.2099G>T	p.Arg700Ile	p.R700I	ENST00000273854	NM_004439.5	700	aGa/aTa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66218800	66218800	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	38	249	0	ENST00000273854.3:c.2258C>A	p.Thr753Lys	p.T753K	ENST00000273854	NM_004439.5	753	aCa/aAa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838381	156838381	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs540751200		P-0078668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	76	525	0	ENST00000524377.1:c.659G>A	p.Arg220Gln	p.R220Q	ENST00000524377	NM_002529.3	220	cGg/cAg																																																																															
CCND3	896	MSKCC	GRCh37	6	41909203	41909203	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	47	421	0	ENST00000372991.4:c.185A>T	p.Tyr62Phe	p.Y62F	ENST00000372991	NM_001760.3	62	tAc/tTc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012368	29012368	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1363282680		P-0078668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	65	337	0	ENST00000282397.4:c.503C>A	p.Thr168Asn	p.T168N	ENST00000282397	NM_002019.4	168	aCt/aAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541634	187541634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	93	493	0	ENST00000441802.2:c.6106G>T	p.Gly2036Cys	p.G2036C	ENST00000441802	NM_005245.3	2036	Ggc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207149	1207162	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCAAGAAGAAGA	CCTCAAGAAGAAGA	-			P-0078668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	68	416	0	ENST00000326873.7:c.237_250del	p.Leu80ValfsTer78	p.L80Vfs*78	ENST00000326873	NM_000455.4	79	atCCTCAAGAAGAAGAag/atag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0078676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	8	332	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489463	40489463	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	25	349	0	ENST00000264657.5:c.787C>G	p.Leu263Val	p.L263V	ENST00000264657	NM_139276.2	263	Cta/Gta																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226253371	226253371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	47	197	0	ENST00000366813.1:c.143C>T	p.Ala48Val	p.A48V	ENST00000366813		48	gCg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	68	457	0	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101469	27101469	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs558739370		P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	103	419	0	ENST00000324856.7:c.4751A>G	p.Gln1584Arg	p.Q1584R	ENST00000324856	NM_006015.4	1584	cAg/cGg																																																																															
SUFU	51684	MSKCC	GRCh37	10	104375060	104375060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137880855		P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	55	368	0	ENST00000369902.3:c.1058C>T	p.Thr353Met	p.T353M	ENST00000369902	NM_016169.3	353	aCg/aTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	112	336	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	70	386	2	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	30	263	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	53	477	0	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
POLE	5426	MSKCC	GRCh37	12	133225927	133225927	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779464847		P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	109	427	0	ENST00000320574.5:c.3970C>T	p.Arg1324Cys	p.R1324C	ENST00000320574	NM_006231.2	1324	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	43	290	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287469	46287469	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	33	287	0	ENST00000334344.6:c.5333del	p.Asn1778IlefsTer13	p.N1778Ifs*13	ENST00000334344	NM_152641.2	1776	ttA/tt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495715	56495715	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	89	406	0	ENST00000267101.3:c.3910del	p.His1304MetfsTer7	p.H1304Mfs*7	ENST00000267101	NM_001982.3	1302	gCc/gc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563383	21563383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	75	626	0	ENST00000382592.4:c.536C>T	p.Ser179Leu	p.S179L	ENST00000382592	NM_014572.2	179	tCg/tTg																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	139	470	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251108	99251109	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs746570875		P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	70	449	0	ENST00000268035.6:c.418dup	p.Ala140GlyfsTer5	p.A140Gfs*5	ENST00000268035	NM_000875.3	138	cgg/cGgg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349641	89349641	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1064796815		P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	123	431	5	ENST00000301030.4:c.3309del	p.Asp1104MetfsTer214	p.D1104Mfs*214	ENST00000301030	NM_001256183.1	1103	aaA/aa																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679391	33679391	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772949390		P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	116	365	0	ENST00000308377.4:c.2690C>T	p.Pro897Leu	p.P897L	ENST00000308377	NM_152270.3	897	cCg/cTg																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679779	33679779	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs546044791		P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	130	475	0	ENST00000308377.4:c.2302G>A	p.Glu768Lys	p.E768K	ENST00000308377	NM_152270.3	768	Gaa/Aaa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	159	537	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435162	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	159	541	5	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/gGgt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	66	482	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78936796	78936796	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	86	505	0	ENST00000306801.3:c.3878A>G	p.Tyr1293Cys	p.Y1293C	ENST00000306801	NM_020761.2	1293	tAc/tGc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602773	10602773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	63	553	0	ENST00000171111.5:c.805C>T	p.Arg269Trp	p.R269W	ENST00000171111	NM_203500.1	269	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222828	36222828	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	44	440	2	ENST00000222270.7:c.5462del	p.Pro1821HisfsTer74	p.P1821Hfs*74	ENST00000222270	NM_014727.1	1819	gaC/ga																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716236	52716236	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs945817997		P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	71	476	0	ENST00000322088.6:c.680C>T	p.Ala227Val	p.A227V	ENST00000322088	NM_014225.5	227	gCg/gTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7117148	7117148	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	63	421	0	ENST00000302850.5:c.4068G>T	p.Glu1356Asp	p.E1356D	ENST00000302850	NM_000208.2	1356	gaG/gaT																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	93	479	5	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	193	530	2	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793663		P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	77	366	0	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178937422	178937422	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	15	89	0	ENST00000263967.3:c.1810T>C	p.Cys604Arg	p.C604R	ENST00000263967	NM_006218.2	604	Tgt/Cgt																																																																															
TP63	8626	MSKCC	GRCh37	3	189349323	189349323	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376627647		P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	45	379	0	ENST00000264731.3:c.19C>T	p.Arg7Trp	p.R7W	ENST00000264731	NM_003722.4	7	Cgg/Tgg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	72	372	3	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637539	52637540	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	45	274	0	ENST00000394830.3:c.2776dup	p.Arg926LysfsTer4	p.R926Kfs*4	ENST00000394830	NM_018313.4	926	aga/aAga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52662972	52662972	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779427834		P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	56	311	0	ENST00000394830.3:c.1381C>T	p.Arg461Cys	p.R461C	ENST00000394830	NM_018313.4	461	Cgc/Tgc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249361	153249361	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	56	394	0	ENST00000281708.4:c.1417del	p.Arg473GlufsTer25	p.R473Efs*25	ENST00000281708	NM_033632.3	473	Aga/ga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187522472	187522472	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749669933		P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	50	366	0	ENST00000441802.2:c.11591C>T	p.Thr3864Met	p.T3864M	ENST00000441802	NM_005245.3	3864	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175959	112175960	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	120	433	0	ENST00000257430.4:c.4669_4670del	p.Ile1557Ter	p.I1557*	ENST00000257430	NM_000038.5	1556	acTAtt/actt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030271	180030271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	72	504	0	ENST00000261937.6:c.4013G>T	p.Gly1338Val	p.G1338V	ENST00000261937	NM_182925.4	1338	gGg/gTg																																																																															
SDHA	6389	MSKCC	GRCh37	5	226017	226017	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759827541		P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	13	122	0	ENST00000264932.6:c.476C>T	p.Pro159Leu	p.P159L	ENST00000264932	NM_004168.2	159	cCg/cTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576437	67576437	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141981005		P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	75	319	0	ENST00000274335.5:c.716C>T	p.Thr239Met	p.T239M	ENST00000274335		239	aCg/aTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	89	324	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86682691	86682691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	84	300	1	ENST00000274376.6:c.2896C>T	p.Arg966Cys	p.R966C	ENST00000274376	NM_002890.2	966	Cgt/Tgt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508490	106508490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	91	398	0	ENST00000359195.3:c.484G>A	p.Val162Ile	p.V162I	ENST00000359195	NM_002649.2	162	Gtc/Atc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141566347	141566347	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	53	396	0	ENST00000220592.5:c.1065del	p.Lys355AsnfsTer2	p.K355Nfs*2	ENST00000220592	NM_012154.3	355	aaA/aa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187104	38187104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758646155		P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	116	399	0	ENST00000317025.8:c.1373C>T	p.Ala458Val	p.A458V	ENST00000317025	NM_023034.1	458	gCg/gTg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371770	55371770	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763824540		P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	51	538	0	ENST00000297316.4:c.460G>A	p.Gly154Ser	p.G154S	ENST00000297316	NM_022454.3	154	Ggc/Agc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	89	213	1	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
AR	367	MSKCC	GRCh37	X	66766312	66766312	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1410383824		P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	20	209	0	ENST00000374690.3:c.1324G>A	p.Glu442Lys	p.E442K	ENST00000374690	NM_000044.3	442	Gaa/Aaa																																																																															
MPL	4352	MSKCC	GRCh37	1	43814533	43814533	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	38	447	0	ENST00000372470.3:c.1328G>T	p.Gly443Val	p.G443V	ENST00000372470	NM_005373.2	443	gGg/gTg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45796901	45796901	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	59	415	1	ENST00000372115.3:c.1387A>G	p.Thr463Ala	p.T463A	ENST00000372115	NM_001048171.1	463	Acg/Gcg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65303621	65303621	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	110	354	0	ENST00000342505.4:c.3134T>C	p.Val1045Ala	p.V1045A	ENST00000342505	NM_002227.2	1045	gTg/gCg																																																																															
CTR9	9646	MSKCC	GRCh37	11	10785747	10785747	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	45	363	0	ENST00000361367.2:c.1283A>C	p.Gln428Pro	p.Q428P	ENST00000361367	NM_014633.3	428	cAg/cCg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515018	103515018	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	80	471	0	ENST00000355739.4:c.1519G>T	p.Val507Leu	p.V507L	ENST00000355739	NM_000123.3	507	Gtg/Ttg																																																																															
BLM	641	MSKCC	GRCh37	15	91293013	91293013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	56	385	0	ENST00000355112.3:c.515C>A	p.Pro172Gln	p.P172Q	ENST00000355112	NM_000057.2	172	cCa/cAa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778147	3778147	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	149	513	0	ENST00000262367.5:c.6901A>G	p.Met2301Val	p.M2301V	ENST00000262367	NM_004380.2	2301	Atg/Gtg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786145	3786145	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	62	443	0	ENST00000262367.5:c.4620del	p.Phe1540LeufsTer10	p.F1540Lfs*10	ENST00000262367	NM_004380.2	1540	ttT/tt																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544342	86544342	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	80	457	0	ENST00000262426.4:c.167T>C	p.Leu56Pro	p.L56P	ENST00000262426	NM_001451.2	56	cTc/cCc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19261544	19261544	+	start_lost	Translation_Start_Site	SNP	T	T	G			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	54	295	0	ENST00000162023.5:c.1A>C	p.Met1?	p.M1?	ENST00000162023		1	Atg/Ctg																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731548	47731548	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	34	432	0	ENST00000449228.1:c.244C>A	p.Pro82Thr	p.P82T	ENST00000449228	NM_001127240.2	82	Ccc/Acc																																																																															
IDH1	3417	MSKCC	GRCh37	2	209108193	209108193	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1010898370		P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	55	317	0	ENST00000345146.2:c.656A>G	p.Tyr219Cys	p.Y219C	ENST00000345146	NM_005896.2	219	tAt/tGt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966402	25966402	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	128	471	0	ENST00000435504.4:c.2804T>C	p.Met935Thr	p.M935T	ENST00000435504		935	aTg/aCg																																																																															
ALK	238	MSKCC	GRCh37	2	30143054	30143054	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs536284304		P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	68	592	0	ENST00000389048.3:c.472C>A	p.Pro158Thr	p.P158T	ENST00000389048	NM_004304.4	158	Ccc/Acc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719859	61719859	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	46	295	0	ENST00000401558.2:c.1409T>C	p.Val470Ala	p.V470A	ENST00000401558	NM_003400.3	470	gTa/gCa																																																																															
EP300	2033	MSKCC	GRCh37	22	41531843	41531843	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	28	296	0	ENST00000263253.7:c.1555G>T	p.Gly519Cys	p.G519C	ENST00000263253	NM_001429.3	519	Ggt/Tgt																																																																															
ATR	545	MSKCC	GRCh37	3	142217485	142217485	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	25	263	0	ENST00000350721.4:c.5512A>G	p.Ser1838Gly	p.S1838G	ENST00000350721	NM_001184.3	1838	Agc/Ggc																																																																															
APC	324	MSKCC	GRCh37	5	112103009	112103010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	84	327	0	ENST00000257430.4:c.347dup	p.Ser117PhefsTer22	p.S117Ffs*22	ENST00000257430	NM_000038.5	115	atg/atGg																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225653	26225653	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			984	53	727	0	ENST00000360408.1:c.271A>G	p.Met91Val	p.M91V	ENST00000360408	NM_003532.2	91	Atg/Gtg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878739	151878742	+	frameshift_variant	Frame_Shift_Del	DEL	ACAG	ACAG	-			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	50	437	0	ENST00000262189.6:c.6203_6206del	p.Ser2068LeufsTer9	p.S2068Lfs*9	ENST00000262189	NM_170606.2	2068	tCTGTt/tt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135804160	135804160	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	75	370	0	ENST00000298552.3:c.100A>G	p.Asn34Asp	p.N34D	ENST00000298552	NM_001162426.1	34	Aat/Gat																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1325325	1325325	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0078677-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	55	326	0	ENST00000381566.1:c.349+1G>A		p.X117_splice	ENST00000381566		117																																																																																
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0078697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	173	440	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911535	101911535	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs113605875		P-0078697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	94	329	0	ENST00000374994.4:c.1460G>T	p.Arg487Leu	p.R487L	ENST00000374994	NM_004612.2	487	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0078697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	222	278	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053015	180053015	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0078697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	285	480	3	ENST00000261937.6:c.1275T>G	p.His425Gln	p.H425Q	ENST00000261937	NM_182925.4	425	caT/caG																																																																															
ARID2	196528	MSKCC	GRCh37	12	46298685	46298837	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGACTGACAATCTTCTATATGTTTTTTTGCAGATTGTTAAAGAGACATGAAAATAACTTATCAGTGCTAGCCATTAGTAACATGGAAGCTTCCTCCACCCTTGCCAAATGCCTTTATGAACTTAATTTTACAGTTCAGAGTAAGGAACAAGAA	AGACTGACAATCTTCTATATGTTTTTTTGCAGATTGTTAAAGAGACATGAAAATAACTTATCAGTGCTAGCCATTAGTAACATGGAAGCTTCCTCCACCCTTGCCAAATGCCTTTATGAACTTAATTTTACAGTTCAGAGTAAGGAACAAGAA	-			P-0078697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	54	192	0	ENST00000334344.6:c.5364-31_5485del		p.X1788_splice	ENST00000334344	NM_152641.2	1788																																																																																
POT1	25913	MSKCC	GRCh37	7	124499156	124499156	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	57	279	0	ENST00000357628.3:c.557G>T	p.Gly186Val	p.G186V	ENST00000357628	NM_015450.2	186	gGc/gTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0078698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	1212	361	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254807	16254807	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	81	428	1	ENST00000375759.3:c.2072A>T	p.Asp691Val	p.D691V	ENST00000375759	NM_015001.2	691	gAt/gTt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118369092	118369092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	68	288	0	ENST00000534358.1:c.5810A>G	p.Glu1937Gly	p.E1937G	ENST00000534358	NM_005933.3	1937	gAa/gGa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992689	72992689	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			756	49	438	0	ENST00000268489.5:c.1356C>G	p.Phe452Leu	p.F452L	ENST00000268489	NM_006885.3	452	ttC/ttG																																																																															
TP53	7157	MSKCC	GRCh37	17	7579508	7579521	+	frameshift_variant	Frame_Shift_Del	DEL	GGACCTGGGTCTTC	GGACCTGGGTCTTC	-			P-0078698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			824	57	501	0	ENST00000269305.4:c.166_179del	p.Glu56ArgfsTer2	p.E56Rfs*2	ENST00000269305	NM_001126112.2	56	GAAGACCCAGGTCCa/a																																																																															
GNA11	2767	MSKCC	GRCh37	19	3121121	3121121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0078698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	64	424	0	ENST00000078429.4:c.1024G>T	p.Ala342Ser	p.A342S	ENST00000078429	NM_002067.2	342	Gcg/Tcg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891124	151891124	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	70	379	0	ENST00000262189.6:c.4630C>G	p.Pro1544Ala	p.P1544A	ENST00000262189	NM_170606.2	1544	Cca/Gca																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946286	2946286	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	58	371	0	ENST00000396946.4:c.3451G>T	p.Glu1151Ter	p.E1151*	ENST00000396946	NM_032415.4	1151	Gag/Tag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984154	2984154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	41	382	0	ENST00000396946.4:c.376G>T	p.Gly126Cys	p.G126C	ENST00000396946	NM_032415.4	126	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579368	7579368	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0078701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	205	471	0	ENST00000269305.4:c.319T>G	p.Tyr107Asp	p.Y107D	ENST00000269305	NM_001126112.2	107	Tac/Gac																																																																															
NSD1	64324	MSKCC	GRCh37	5	176696757	176696757	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752685166		P-0078701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			771	78	438	1	ENST00000439151.2:c.5458G>A	p.Val1820Met	p.V1820M	ENST00000439151	NM_022455.4	1820	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0078701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	239	370	0	ENST00000257430.4:c.4063dup	p.Ser1355PhefsTer20	p.S1355Ffs*20	ENST00000257430	NM_000038.5	1353	-/T																																																																															
ERG	2078	MSKCC	GRCh37	21	39795361	39795361	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772248149		P-0078701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	87	412	0	ENST00000288319.7:c.359C>T	p.Thr120Met	p.T120M	ENST00000288319	NM_182918.3	120	aCg/aTg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739716	41739716	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749750926		P-0078701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			837	63	420	0	ENST00000242208.4:c.257C>T	p.Ala86Val	p.A86V	ENST00000242208	NM_002192.2	86	gCg/gTg																																																																															
PGR	5241	MSKCC	GRCh37	11	100909905	100909905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	36	314	0	ENST00000325455.5:c.2744C>T	p.Ala915Val	p.A915V	ENST00000325455	NM_001202474.3	915	gCa/gTa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729619	41729619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			921	89	458	0	ENST00000242208.4:c.910C>T	p.Pro304Ser	p.P304S	ENST00000242208	NM_002192.2	304	Cct/Tct																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0078711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	30	300	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876658483		P-0078711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	117	391	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0078711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	92	342	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411729	63411729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	200	430	0	ENST00000330258.3:c.1438G>A	p.Glu480Lys	p.E480K	ENST00000330258	NM_152424.3	480	Gag/Aag																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856469	111856469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	36	402	0	ENST00000341259.2:c.520G>A	p.Ala174Thr	p.A174T	ENST00000341259	NM_005475.2	174	Gcc/Acc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554545	63554545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	141	393	0	ENST00000307078.5:c.194C>T	p.Pro65Leu	p.P65L	ENST00000307078	NM_004655.3	65	cCg/cTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391896	139391896	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766745955		P-0078711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	193	436	0	ENST00000277541.6:c.6295G>A	p.Asp2099Asn	p.D2099N	ENST00000277541	NM_017617.3	2099	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0078711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	108	228	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118345015	118345015	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs374983006		P-0078711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	218	283	0	ENST00000534358.1:c.3141C>A	p.Asp1047Glu	p.D1047E	ENST00000534358	NM_005933.3	1047	gaC/gaA																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50481191	50481191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	29	319	0	ENST00000394963.4:c.577G>A	p.Ala193Thr	p.A193T	ENST00000394963	NM_003076.4	193	Gct/Act																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249450	153249450	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	202	309	0	ENST00000281708.4:c.1328T>A	p.Leu443His	p.L443H	ENST00000281708	NM_033632.3	443	cTc/cAc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89813011	89813011	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0078711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	226	306	0	ENST00000389301.3:c.3494T>C	p.Leu1165Ser	p.L1165S	ENST00000389301	NM_000135.2	1165	tTa/tCa																																																																															
POLE	5426	MSKCC	GRCh37	12	133245023	133245024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs767646338		P-0078725-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	105	723	0	ENST00000320574.5:c.2091dup	p.Phe699ValfsTer11	p.F699Vfs*11	ENST00000320574	NM_006231.2	697	-/C																																																																															
AKT2	208	MSKCC	GRCh37	19	40747973	40747973	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078725-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	155	591	0	ENST00000392038.2:c.445A>T	p.Met149Leu	p.M149L	ENST00000392038	NM_001626.4	149	Atg/Ttg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117622280	117622280	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078725-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	164	389	0	ENST00000368508.3:c.6590G>T	p.Cys2197Phe	p.C2197F	ENST00000368508	NM_002944.2	2197	tGc/tTc																																																																															
MGA	23269	MSKCC	GRCh37	15	42054395	42054396	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0078727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	199	472	0	ENST00000219905.7:c.7585dup	p.Arg2529LysfsTer9	p.R2529Kfs*9	ENST00000219905	NM_001164273.1	2527	caa/cAaa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349129	89349129	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	282	534	0	ENST00000301030.4:c.3821C>G	p.Ala1274Gly	p.A1274G	ENST00000301030	NM_001256183.1	1274	gCc/gGc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202212	138202212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	247	530	0	ENST00000237289.4:c.2129G>A	p.Ser710Asn	p.S710N	ENST00000237289	NM_001270507.1	710	aGc/aAc																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0078730-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	2763	567	0	ENST00000397752.3:c.3028+1G>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
PIK3CB	5291	MSKCC	GRCh37	3	138426006	138426006	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755672708		P-0078730-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	110	334	0	ENST00000289153.2:c.1525G>A	p.Asp509Asn	p.D509N	ENST00000289153	NM_006219.2	509	Gat/Aat																																																																															
CDH1	999	MSKCC	GRCh37	16	68842692	68842692	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	90	480	0	ENST00000261769.5:c.628G>C	p.Glu210Gln	p.E210Q	ENST00000261769	NM_004360.3	210	Gaa/Caa																																																																															
RB1	5925	MSKCC	GRCh37	13	48941720	48941720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			10	186	249	1	ENST00000267163.4:c.1030C>T	p.Gln344Ter	p.Q344*	ENST00000267163	NM_000321.2	344	Cag/Tag																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732409	74732409	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1326283685		P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	194	613	0	ENST00000359995.5:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000359995	NM_001195427.1	167	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578247	7578247	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			11	206	566	0	ENST00000269305.4:c.602T>A	p.Leu201Ter	p.L201*	ENST00000269305	NM_001126112.2	201	tTg/tAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534464	187534464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	38	524	0	ENST00000441802.2:c.9262G>A	p.Glu3088Lys	p.E3088K	ENST00000441802	NM_005245.3	3088	Gag/Aag																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99163120	99163120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779717943		P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	148	365	0	ENST00000074304.5:c.1126C>T	p.Arg376Cys	p.R376C	ENST00000074304	NM_001134224.1	376	Cgc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108225575	108225575	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	31	374	0	ENST00000278616.4:c.8824C>T	p.Gln2942Ter	p.Q2942*	ENST00000278616	NM_000051.3	2942	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860485	151860485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	92	609	0	ENST00000262189.6:c.10177G>T	p.Glu3393Ter	p.E3393*	ENST00000262189	NM_170606.2	3393	Gaa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859782	151859782	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	119	650	0	ENST00000262189.6:c.10880C>G	p.Ser3627Ter	p.S3627*	ENST00000262189	NM_170606.2	3627	tCa/tGa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029128	14029128	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748206066		P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	62	469	0	ENST00000311895.7:c.1339G>A	p.Glu447Lys	p.E447K	ENST00000311895	NM_005236.2	447	Gaa/Aaa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135802635	135802635	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs118203343		P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	101	492	0	ENST00000298552.3:c.163C>T	p.Gln55Ter	p.Q55*	ENST00000298552	NM_001162426.1	55	Cag/Tag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933649	39933649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	53	648	0	ENST00000378444.4:c.950C>T	p.Ser317Phe	p.S317F	ENST00000378444	NM_001123385.1	317	tCt/tTt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3799654	3799654	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	66	233	0	ENST00000262367.5:c.3810G>C	p.Lys1270Asn	p.K1270N	ENST00000262367	NM_004380.2	1270	aaG/aaC																																																																															
AR	367	MSKCC	GRCh37	X	66766149	66766149	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	67	585	0	ENST00000374690.3:c.1161C>G	p.Ile387Met	p.I387M	ENST00000374690	NM_000044.3	387	atC/atG																																																																															
MET	4233	MSKCC	GRCh37	7	116339478	116339478	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	107	463	0	ENST00000397752.3:c.340G>C	p.Asp114His	p.D114H	ENST00000397752	NM_000245.2	114	Gat/Cat																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231143	46231143	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	106	350	0	ENST00000334344.6:c.1063A>T	p.Met355Leu	p.M355L	ENST00000334344	NM_152641.2	355	Atg/Ttg																																																																															
KDR	3791	MSKCC	GRCh37	4	55981137	55981137	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	76	357	0	ENST00000263923.4:c.562C>G	p.Pro188Ala	p.P188A	ENST00000263923	NM_002253.2	188	Ccc/Gcc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118352717	118352717	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	70	526	0	ENST00000534358.1:c.3922C>G	p.Gln1308Glu	p.Q1308E	ENST00000534358	NM_005933.3	1308	Cag/Gag																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514967	103514967	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	123	505	0	ENST00000355739.4:c.1468G>C	p.Asp490His	p.D490H	ENST00000355739	NM_000123.3	490	Gat/Cat																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662671	227662671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	44	627	1	ENST00000305123.5:c.784G>A	p.Asp262Asn	p.D262N	ENST00000305123	NM_005544.2	262	Gat/Aat																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5211698	5211698	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	149	515	0	ENST00000357368.4:c.5137A>T	p.Asn1713Tyr	p.N1713Y	ENST00000357368	NM_002850.3	1713	Aac/Tac																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096661	178096661	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	48	449	0	ENST00000397062.3:c.670G>C	p.Asp224His	p.D224H	ENST00000397062	NM_006164.4	224	Gac/Cac																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178543	32178543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	17	499	0	ENST00000375023.3:c.2851G>T	p.Gly951Trp	p.G951W	ENST00000375023	NM_004557.3	951	Ggg/Tgg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40500477	40500477	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	131	377	0	ENST00000264657.5:c.58C>G	p.Gln20Glu	p.Q20E	ENST00000264657	NM_139276.2	20	Cag/Gag																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51508001	51508001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	38	343	0	ENST00000260433.2:c.757G>A	p.Asp253Asn	p.D253N	ENST00000260433		253	Gat/Aat																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786096	3786096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	85	476	0	ENST00000262367.5:c.4669G>A	p.Glu1557Lys	p.E1557K	ENST00000262367	NM_004380.2	1557	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0078734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	194	327	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0078734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	318	270	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578485	7578485	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1064793929		P-0078734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	198	464	0	ENST00000269305.4:c.445del	p.Ser149ProfsTer21	p.S149Pfs*21	ENST00000269305	NM_001126112.2	149	Tcc/cc																																																																															
CDH1	999	MSKCC	GRCh37	16	68842448	68842448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	71	373	0	ENST00000261769.5:c.509C>T	p.Pro170Leu	p.P170L	ENST00000261769	NM_004360.3	170	cCa/cTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0078735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	158	448	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249028	55249028	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1275022697		P-0078735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	159	616	0	ENST00000275493.2:c.2326C>T	p.Arg776Cys	p.R776C	ENST00000275493	NM_005228.3	776	Cgc/Tgc																																																																															
APLNR	187	MSKCC	GRCh37	11	57004264	57004264	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs376527330		P-0078735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	163	544	0	ENST00000257254.3:c.215C>T	p.Ala72Val	p.A72V	ENST00000257254		72	gCg/gTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0078790-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	60	321	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0078790-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	115	365	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250883	153250883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0078790-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	37	258	0	ENST00000281708.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000281708	NM_033632.3	393	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591891	48591891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912581		P-0078790-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	94	399	0	ENST00000342988.3:c.1054G>A	p.Gly352Arg	p.G352R	ENST00000342988	NM_005359.5	352	Gga/Aga																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440372	52440372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078790-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	111	481	0	ENST00000460680.1:c.680G>A	p.Arg227His	p.R227H	ENST00000460680	NM_004656.3	227	cGc/cAc																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96920573	96920573	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs759138897		P-0078790-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	77	343	0	ENST00000258439.3:c.407C>T	p.Thr136Met	p.T136M	ENST00000258439	NM_001193304.2	136	aCg/aTg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998343	100998343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0078790-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	58	233	0	ENST00000325455.5:c.1459G>A	p.Gly487Ser	p.G487S	ENST00000325455	NM_001202474.3	487	Ggc/Agc																																																																															
MAX	4149	MSKCC	GRCh37	14	65544748	65544748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0078794-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	33	553	0	ENST00000358664.4:c.178C>T	p.Arg60Trp	p.R60W	ENST00000358664	NM_002382.4	60	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0078794-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	70	332	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0068974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	112	471	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78931459	78931459	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761590823		P-0068974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			752	40	439	0	ENST00000306801.3:c.3406G>A	p.Gly1136Ser	p.G1136S	ENST00000306801	NM_020761.2	1136	Ggc/Agc																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858468	27858468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			825	59	538	0	ENST00000359303.2:c.103G>A	p.Gly35Ser	p.G35S	ENST00000359303	NM_003535.2	35	Ggt/Agt																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348867	11348867	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	41	378	0	ENST00000332029.2:c.469del	p.Ala157ArgfsTer48	p.A157Rfs*48	ENST00000332029	NM_003745.1	157	Gcg/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578502	7578502	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032788-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	151	941	1	ENST00000269305.4:c.428T>C	p.Val143Ala	p.V143A	ENST00000269305	NM_001126112.2	143	gTg/gCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0035774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	240	769	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
RB1	5925	MSKCC	GRCh37	13	48936995	48936995	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587778842		P-0035774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	134	426	0	ENST00000267163.4:c.763C>T	p.Arg255Ter	p.R255*	ENST00000267163	NM_000321.2	255	Cga/Tga																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910371	29910372	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	88	800	0	ENST00000376809.5:c.46dup	p.Ala16GlyfsTer83	p.A16Gfs*83	ENST00000376809	NM_002116.7	14	tcg/tcGg																																																																															
NF1	4763	MSKCC	GRCh37	17	29556370	29556370	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	147	654	0	ENST00000358273.4:c.2737A>G	p.Ile913Val	p.I913V	ENST00000358273	NM_001042492.2	913	Ata/Gta																																																																															
MET	4233	MSKCC	GRCh37	7	116411887	116411888	+	intron_variant	Intron	INS	-	-	AG			P-0035774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	1972	1087	0	ENST00000397752.3:c.2888-16_2888-15insAG		p.*963*	ENST00000397752	NM_000245.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0040649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	70	428	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457295	67457295	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	81	507	0	ENST00000327367.4:c.269G>T	p.Arg90Leu	p.R90L	ENST00000327367	NM_005902.3	90	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577151	7577151	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs72661119		P-0040649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	59	400	0	ENST00000269305.4:c.787A>G	p.Asn263Asp	p.N263D	ENST00000269305	NM_001126112.2	263	Aat/Gat																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395639	45395640	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0040649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	42	217	0	ENST00000262160.6:c.494dup	p.Tyr165Ter	p.Y165*	ENST00000262160	NM_005901.5	165	tac/taAc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4117581	4117581	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	51	456	0	ENST00000262948.5:c.139G>C	p.Asp47His	p.D47H	ENST00000262948	NM_030662.3	47	Gac/Cac																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026843	48026843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	65	306	0	ENST00000234420.5:c.1721C>T	p.Ser574Leu	p.S574L	ENST00000234420	NM_000179.2	574	tCa/tTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532715	187532716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	65	382	0	ENST00000441802.2:c.9677dup	p.Asn3226LysfsTer6	p.N3226Kfs*6	ENST00000441802	NM_005245.3	3226	aac/aaAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591121	67591121	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1390357148		P-0040649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	42	241	0	ENST00000274335.5:c.1714C>T	p.Gln572Ter	p.Q572*	ENST00000274335		572	Cag/Tag																																																																															
MET	4233	MSKCC	GRCh37	7	116412010	116412010	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	86	554	3	ENST00000397752.3:c.2995G>T	p.Glu999Ter	p.E999*	ENST00000397752	NM_000245.2	999	Gaa/Taa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041355	47041355	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	101	488	0	ENST00000329236.7:c.1467del	p.Asp490ThrfsTer136	p.D490Tfs*136	ENST00000329236	NM_001204466.1	489	Ccc/cc																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412044	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	INS	GG	GG	AATA			P-0040649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	140	537	0	ENST00000397752.3:c.3028_3028+1delinsAATA		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912660		P-0041041-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			272	84	770	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231134	98231134	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1311707136		P-0041041-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			367	21	798	0	ENST00000331920.6:c.2149G>A	p.Asp717Asn	p.D717N	ENST00000331920	NM_000264.3	717	Gac/Aac																																																																															
BTK	695	MSKCC	GRCh37	X	100630154	100630154	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041041-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			132	19	455	0	ENST00000308731.7:c.119A>G	p.Tyr40Cys	p.Y40C	ENST00000308731	NM_000061.2	40	tAt/tGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332868	152332868	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041041-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	43	543	0	ENST00000206249.3:c.1174G>T	p.Val392Phe	p.V392F	ENST00000206249	NM_000125.3	392	Gtc/Ttc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165890	118165890	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041041-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			370	41	744	0	ENST00000369448.3:c.400C>G	p.Leu134Val	p.L134V	ENST00000369448	NM_017709.3	134	Ctg/Gtg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046620	30046620	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041041-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			199	46	620	0	ENST00000331968.5:c.2563A>G	p.Ile855Val	p.I855V	ENST00000331968	NM_002742.2	855	Atc/Gtc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604643	48604643	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041041-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			174	34	614	0	ENST00000342988.3:c.1465G>T	p.Gly489Ter	p.G489*	ENST00000342988	NM_005359.5	489	Gga/Tga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134277	11134278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TC			P-0041041-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			238	77	728	0	ENST00000344626.4:c.2943_2944inv	p.Lys981_Lys982delinsAsnGln	p.K981_K982delinsNQ	ENST00000344626	NM_003072.3	981	aaGAag/aaTCag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285157	15285157	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041041-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	91	854	0	ENST00000263388.2:c.4458G>C	p.Gln1486His	p.Q1486H	ENST00000263388	NM_000435.2	1486	caG/caC																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446913	29446913	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041041-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	39	680	0	ENST00000544604.2:c.2744G>C	p.Ser915Thr	p.S915T	ENST00000544604	NM_001206998.1	915	aGc/aCc																																																																															
KIT	3815	MSKCC	GRCh37	4	55575594	55575594	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041041-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			117	21	325	0	ENST00000288135.5:c.1120G>C	p.Val374Leu	p.V374L	ENST00000288135	NM_000222.2	374	Gta/Cta																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509134	106509134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041041-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	53	861	0	ENST00000359195.3:c.1128C>A	p.Asn376Lys	p.N376K	ENST00000359195	NM_002649.2	376	aaC/aaA																																																																															
ATRX	546	MSKCC	GRCh37	X	76938382	76938383	+	missense_variant	Missense_Mutation	DNP	TC	TC	CA			P-0041041-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			67	11	457	1	ENST00000373344.5:c.2365_2366delinsTG	p.Asp789Cys	p.D789C	ENST00000373344	NM_000489.3	789	GAt/TGt																																																																															
BTK	695	MSKCC	GRCh37	X	100613683	100613683	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0041041-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			190	31	579	0	ENST00000308731.7:c.896G>C	p.Gly299Ala	p.G299A	ENST00000308731	NM_000061.2	299	gGg/gCg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044853	47044853	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	36	526	0	ENST00000329236.7:c.1945G>C	p.Gly649Arg	p.G649R	ENST00000329236	NM_001204466.1	649	Gga/Cga																																																																															
STK40	83931	MSKCC	GRCh37	1	36823907	36823907	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1215063514		P-0043956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	93	568	0	ENST00000373129.3:c.275C>T	p.Thr92Ile	p.T92I	ENST00000373129	NM_032017.1	92	aCc/aTc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864703	57864703	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1241006818		P-0043956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	96	806	0	ENST00000228682.2:c.2180C>T	p.Thr727Ile	p.T727I	ENST00000228682	NM_005269.2	727	aCt/aTt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729814	41729814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	77	419	0	ENST00000242208.4:c.715G>A	p.Asp239Asn	p.D239N	ENST00000242208	NM_002192.2	239	Gac/Aac																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508094	106508094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1212203463		P-0043956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	39	288	0	ENST00000359195.3:c.88G>A	p.Ala30Thr	p.A30T	ENST00000359195	NM_002649.2	30	Gcc/Acc																																																																															
MET	4233	MSKCC	GRCh37	7	116339843	116339844	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0043956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	50	436	0	ENST00000397752.3:c.705_706del	p.Asp236CysfsTer4	p.D236Cfs*4	ENST00000397752	NM_000245.2	235	atTGat/atat																																																																															
MET	4233	MSKCC	GRCh37	7	116411877	116411887	+	intron_variant	Intron	DEL	AGCTCTTTCTT	AGCTCTTTCTT	-			P-0043956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	778	813	0	ENST00000397752.3:c.2888-26_2888-16del		p.*963*	ENST00000397752	NM_000245.2																																																																																	
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	42	295	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786204041		P-0044388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	90	532	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																															
PGR	5241	MSKCC	GRCh37	11	100962566	100962566	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749564230		P-0044388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	32	325	1	ENST00000325455.5:c.1831G>A	p.Val611Ile	p.V611I	ENST00000325455	NM_001202474.3	611	Gtt/Att																																																																															
RECQL	5965	MSKCC	GRCh37	12	21636367	21636367	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs376839517		P-0044388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	50	366	2	ENST00000421138.2:c.643C>T	p.Arg215Ter	p.R215*	ENST00000421138		215	Cga/Tga																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368291	45368291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	24	299	0	ENST00000262160.6:c.1311G>T	p.Trp437Cys	p.W437C	ENST00000262160	NM_005901.5	437	tgG/tgT																																																																															
ALK	238	MSKCC	GRCh37	2	29917804	29917804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	43	619	0	ENST00000389048.3:c.864G>A	p.Trp288Ter	p.W288*	ENST00000389048	NM_004304.4	288	tgG/tgA																																																																															
AR	367	MSKCC	GRCh37	X	66766357	66766380	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCGGCGGCGGCGGC	GGCGGCGGCGGCGGCGGCGGCGGC	-	rs1163357198		P-0051086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	10	69	0	ENST00000374690.3:c.1397_1420del	p.Gly466_Gly473del	p.G466_G473del	ENST00000374690	NM_000044.3	457	GGCGGCGGCGGCGGCGGCGGCGGC/-																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671657	30671657	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs574552499		P-0051086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	103	589	0	ENST00000376406.3:c.5303C>T	p.Thr1768Ile	p.T1768I	ENST00000376406	NM_014641.2	1768	aCa/aTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0051809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	119	445	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0051809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	263	662	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0051809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	100	229	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570325	87570325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	99	663	0	ENST00000277120.3:c.2065G>A	p.Val689Met	p.V689M	ENST00000277120		689	Gtg/Atg																																																																															
FYN	2534	MSKCC	GRCh37	6	112041026	112041026	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746134687		P-0051809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	151	368	0	ENST00000368678.4:c.229C>T	p.Arg77Cys	p.R77C	ENST00000368678		77	Cgt/Tgt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711248	114711251	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	GA			P-0051809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	125	322	1	ENST00000543371.1:c.263_266delinsGA	p.Lys88ArgfsTer8	p.K88Rfs*8	ENST00000543371	NM_001198531.1	88	aAGAGg/aGAg																																																																															
INHA	3623	MSKCC	GRCh37	2	220440180	220440180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055174-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			939	76	866	0	ENST00000243786.2:c.1033G>A	p.Asp345Asn	p.D345N	ENST00000243786	NM_002191.3	345	Gat/Aat																																																																															
CARM1	10498	MSKCC	GRCh37	19	11018795	11018795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055174-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			987	89	840	0	ENST00000327064.4:c.427G>A	p.Glu143Lys	p.E143K	ENST00000327064	NM_199141.1	143	Gag/Aag																																																																															
MET	4233	MSKCC	GRCh37	7	116411877	116411897	+	splice_region_variant,intron_variant	Splice_Region	DEL	AGCTCTTTCTTTCTCTCTGTT	AGCTCTTTCTTTCTCTCTGTT	-			P-0055174-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			776	135	718	0	ENST00000397752.3:c.2888-26_2888-6del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
MED12	9968	MSKCC	GRCh37	X	70342068	70342068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055174-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			603	60	575	1	ENST00000374080.3:c.1120C>T	p.Pro374Ser	p.P374S	ENST00000374080		374	Cct/Tct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023768	27023768	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	60	325	3	ENST00000324856.7:c.874del	p.Thr292ProfsTer71	p.T292Pfs*71	ENST00000324856	NM_006015.4	292	Acc/cc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112639	115112640	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0056930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	147	811	0	ENST00000257566.3:c.1100_1101del	p.Asp367ValfsTer7	p.D367Vfs*7	ENST00000257566	NM_016569.3	367	gAT/g																																																																															
CDH1	999	MSKCC	GRCh37	16	68862199	68862199	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs587780787		P-0056930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	148	529	0	ENST00000261769.5:c.2287G>T	p.Glu763Ter	p.E763*	ENST00000261769	NM_004360.3	763	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0058596-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			289	109	538	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123247516	123247516	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519795		P-0058596-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			358	137	442	0	ENST00000358487.5:c.1975A>G	p.Lys659Glu	p.K659E	ENST00000358487	NM_000141.4	659	Aag/Gag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060782	38060784	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0058596-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			630	206	889	0	ENST00000250448.2:c.1205_1207del	p.Ile402del	p.I402del	ENST00000250448	NM_004496.3	402	aTCAac/aac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057789	27057790	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0058596-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			690	222	890	0	ENST00000324856.7:c.1498dup	p.Tyr500LeufsTer123	p.Y500Lfs*123	ENST00000324856	NM_006015.4	499	-/T																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573759	64573759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058596-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			594	179	788	0	ENST00000337652.1:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000337652	NM_130803.2	337	Cgc/Tgc																																																																															
NPM1	4869	MSKCC	GRCh37	5	170832399	170832399	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs776780244		P-0058596-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			175	62	138	0	ENST00000296930.5:c.763A>G	p.Ile255Val	p.I255V	ENST00000296930	NM_002520.6	255	Ata/Gta																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132837	152132837	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058596-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			281	104	511	0	ENST00000262189.6:c.35del	p.Pro12ArgfsTer93	p.P12Rfs*93	ENST00000262189	NM_170606.2	12	cCg/cg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0058811-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	54	203	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0058811-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	283	379	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006827	47006827	+	5_prime_UTR_variant	5'UTR	SNP	C	C	T			P-0058811-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			712	74	384	0	ENST00000329236.7:c.-54C>T		p.*18*	ENST00000329236	NM_001204466.1																																																																																	
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0058811-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	202	238	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748195	41748195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058811-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	37	397	0	ENST00000226382.2:c.574C>A	p.Pro192Thr	p.P192T	ENST00000226382	NM_003924.3	192	Ccg/Acg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213874	66213874	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058811-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	52	312	0	ENST00000273854.3:c.2556C>A	p.Phe852Leu	p.F852L	ENST00000273854	NM_004439.5	852	ttC/ttA																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38953605	38953605	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058811-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	59	237	0	ENST00000357387.3:c.2748G>T	p.Lys916Asn	p.K916N	ENST00000357387	NM_152756.3	916	aaG/aaT																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0060927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			47	161	386	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0060927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	230	495	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0060927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			48	264	523	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0060927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	173	424	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933593	39933594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0060927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			78	193	374	0	ENST00000378444.4:c.1005dup	p.Ser336LeufsTer45	p.S336Lfs*45	ENST00000378444	NM_001123385.1	335	-/C																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593466	48593466	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1064796102		P-0060927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			64	312	462	0	ENST00000342988.3:c.1217C>T	p.Ala406Val	p.A406V	ENST00000342988	NM_005359.5	406	gCg/gTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	245	648	0	ENST00000261937.6:c.89C>T	p.Pro30Leu	p.P30L	ENST00000261937	NM_182925.4	30	cCg/cTg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111884785	111884785	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751330475		P-0060927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	327	666	0	ENST00000341259.2:c.874G>A	p.Glu292Lys	p.E292K	ENST00000341259	NM_005475.2	292	Gag/Aag																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649978	88649978	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786201792		P-0060927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			32	298	374	0	ENST00000372037.3:c.227G>A	p.Cys76Tyr	p.C76Y	ENST00000372037	NM_004329.2	76	tGc/tAc																																																																															
RET	5979	MSKCC	GRCh37	10	43606833	43606833	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	108	816	0	ENST00000355710.3:c.1442T>G	p.Leu481Arg	p.L481R	ENST00000355710	NM_020975.4	481	cTt/cGt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609500	81609500	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	204	552	2	ENST00000298171.2:c.1098T>G	p.Phe366Leu	p.F366L	ENST00000298171	NM_000369.2	366	ttT/ttG																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647082	23647082	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1060502732		P-0060927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	71	590	0	ENST00000261584.4:c.785T>G	p.Leu262Arg	p.L262R	ENST00000261584	NM_024675.3	262	cTt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163858	152163859	+	missense_variant	Missense_Mutation	DNP	AG	AG	GT			P-0060927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	74	500	0	ENST00000206249.3:c.579_580delinsGT	p.Gly194Cys	p.G194C	ENST00000206249	NM_000125.3	193	tcAGgc/tcGTgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0061871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	98	351	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518496	204518496	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1770	138	489	0	ENST00000367182.3:c.1159G>C	p.Asp387His	p.D387H	ENST00000367182	NM_001278516.1	387	Gat/Cat																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206658609	206658609	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1627	103	440	0	ENST00000367120.3:c.1582G>C	p.Val528Leu	p.V528L	ENST00000367120	NM_014002.3	528	Gtg/Ctg																																																																															
CDH1	999	MSKCC	GRCh37	16	68842402	68842417	+	frameshift_variant	Frame_Shift_Del	DEL	GACTGGGTTATTCCTC	GACTGGGTTATTCCTC	-			P-0061871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	115	465	0	ENST00000261769.5:c.463_478del	p.Asp155ProfsTer55	p.D155Pfs*55	ENST00000261769	NM_004360.3	155	GACTGGGTTATTCCTCcc/cc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148514998	148515000	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-	rs775039041		P-0062207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	110	531	3	ENST00000320356.2:c.1209_1211del	p.Glu404del	p.E404del	ENST00000320356	NM_004456.4	403	gaAGAg/gag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991961	72991961	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1262542686		P-0062207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	164	725	1	ENST00000268489.5:c.2084C>T	p.Pro695Leu	p.P695L	ENST00000268489	NM_006885.3	695	cCg/cTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118392096	118392096	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	185	595	0	ENST00000534358.1:c.11607C>G	p.Ile3869Met	p.I3869M	ENST00000534358	NM_005933.3	3869	atC/atG																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993975	72993975	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1193072573		P-0062207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	180	708	0	ENST00000268489.5:c.70T>C	p.Trp24Arg	p.W24R	ENST00000268489	NM_006885.3	24	Tgg/Cgg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108559	8108559	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs532696717		P-0062207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	181	676	0	ENST00000585124.1:c.836A>G	p.Asn279Ser	p.N279S	ENST00000585124	NM_004217.3	279	aAc/aGc																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33433466	33433466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			756	153	537	0	ENST00000335858.7:c.179C>T	p.Ala60Val	p.A60V	ENST00000335858	NM_133629.2	60	gCa/gTa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353784	15353784	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	102	401	0	ENST00000263377.2:c.3096G>C	p.Gln1032His	p.Q1032H	ENST00000263377	NM_058243.2	1032	caG/caC																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953172	17953172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	172	629	1	ENST00000458235.1:c.814C>A	p.Arg272Ser	p.R272S	ENST00000458235	NM_000215.3	272	Cgc/Agc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18974307	18974307	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	164	622	0	ENST00000262803.5:c.2661C>G	p.His887Gln	p.H887Q	ENST00000262803	NM_002911.3	887	caC/caG																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62324548	62324548	+	stop_gained,NMD_transcript_variant	Nonsense_Mutation	SNP	T	T	A	rs1474203821		P-0062207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1750	365	731	0	ENST00000482936.1:c.2904T>A	p.Cys968Ter	p.C968*	ENST00000482936		968	tgT/tgA																																																																															
ATR	545	MSKCC	GRCh37	3	142286920	142286920	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0062207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	76	322	0	ENST00000350721.4:c.136A>T	p.Thr46Ser	p.T46S	ENST00000350721	NM_001184.3	46	Aca/Tca																																																																															
TET2	54790	MSKCC	GRCh37	4	106157245	106157245	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0062207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	173	626	0	ENST00000380013.4:c.2146T>A	p.Ser716Thr	p.S716T	ENST00000380013	NM_001127208.2	716	Tca/Aca																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045846	26045846	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			974	212	942	0	ENST00000540144.1:c.208C>A	p.Arg70Ser	p.R70S	ENST00000540144	NM_003531.2	70	Cgc/Agc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426039	47426039	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0062207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	208	639	0	ENST00000377045.4:c.559C>A	p.Pro187Thr	p.P187T	ENST00000377045	NM_001654.4	187	Ccc/Acc																																																																															
AR	367	MSKCC	GRCh37	X	66943603	66943603	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	160	546	0	ENST00000374690.3:c.2683A>C	p.Met895Leu	p.M895L	ENST00000374690	NM_000044.3	895	Atg/Ctg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0063660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	141	780	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0063660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	323	818	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81888075	81888075	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780140339		P-0063660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	66	469	0	ENST00000359376.3:c.220C>T	p.Arg74Cys	p.R74C	ENST00000359376	NM_002661.3	74	Cgc/Tgc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353939	15353947	+	inframe_deletion	In_Frame_Del	DEL	GGGGTGGTG	GGGGTGGTG	-	rs758265124		P-0063660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	46	283	0	ENST00000263377.2:c.2933_2941del	p.Pro978_Pro980del	p.P978_P980del	ENST00000263377	NM_058243.2	978	cCACCACCCCag/cag																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150916470	150916470	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0063660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	88	446	0	ENST00000271640.5:c.949+1G>A		p.X317_splice	ENST00000271640	NM_001145415.1	317																																																																																
PIK3C2G	5288	MSKCC	GRCh37	12	18435029	18435029	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs577826082		P-0063660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	100	414	0	ENST00000266497.5:c.14G>A	p.Trp5Ter	p.W5*	ENST00000266497		5	tGg/tAg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243826	46243842	+	frameshift_variant	Frame_Shift_Del	DEL	TCATGGATCACAAACCA	TCATGGATCACAAACCA	-			P-0063660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	124	436	0	ENST00000334344.6:c.1921_1937del	p.His641ArgfsTer60	p.H641Rfs*60	ENST00000334344	NM_152641.2	640	ccTCATGGATCACAAACCAta/ccta																																																																															
STK11	6794	MSKCC	GRCh37	19	1220424	1220433	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCACAAGG	GTGCACAAGG	-			P-0063660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	99	664	0	ENST00000326873.7:c.517_526del	p.Val173ThrfsTer111	p.V173Tfs*111	ENST00000326873	NM_000455.4	173	GTGCACAAGGac/ac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928071	178928100	+	inframe_deletion	In_Frame_Del	DEL	ATGGATTAGAAGATTTGCTGAACCCTATTG	ATGGATTAGAAGATTTGCTGAACCCTATTG	-			P-0063660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	42	503	0	ENST00000263967.3:c.1349_1378del	p.His450_Gly460delinsArg	p.H450_G460delinsR	ENST00000263967	NM_006218.2	450	cATGGATTAGAAGATTTGCTGAACCCTATTGgt/cgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597402	10597402	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770453522		P-0063879-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	135	491	0	ENST00000171111.5:c.1801C>T	p.Arg601Trp	p.R601W	ENST00000171111	NM_203500.1	601	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs483352697		P-0063879-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	270	696	0	ENST00000269305.4:c.587G>C	p.Arg196Pro	p.R196P	ENST00000269305	NM_001126112.2	196	cGa/cCa																																																																															
STK11	6794	MSKCC	GRCh37	19	1219381	1219381	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063879-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			272	53	547	0	ENST00000326873.7:c.433G>T	p.Glu145Ter	p.E145*	ENST00000326873	NM_000455.4	145	Gag/Tag																																																																															
RAF1	5894	MSKCC	GRCh37	3	12660083	12660084	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0063879-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			322	67	486	0	ENST00000251849.4:c.137_138delinsTT	p.Gly46Val	p.G46V	ENST00000251849	NM_002880.3	46	gGC/gTT																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046460	30046460	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150599710		P-0063916-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	147	485	0	ENST00000331968.5:c.2723G>A	p.Arg908His	p.R908H	ENST00000331968	NM_002742.2	908	cGt/cAt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716271	52716271	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063916-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	142	634	0	ENST00000322088.6:c.715G>C	p.Asp239His	p.D239H	ENST00000322088	NM_014225.5	239	Gat/Cat																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442512	52442512	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1319729011		P-0063916-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	149	491	0	ENST00000460680.1:c.233A>G	p.Asn78Ser	p.N78S	ENST00000460680	NM_004656.3	78	aAt/aGt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564694	86564710	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGCCCCCTTTGGGGG	CCTGCCCCCTTTGGGGG	-			P-0063916-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	166	818	0	ENST00000274376.6:c.427_443del	p.Leu143GlyfsTer9	p.L143Gfs*9	ENST00000274376	NM_002890.2	142	taCCTGCCCCCTTTGGGGGcg/tacg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0064419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	66	123	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0064419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	44	85	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178257	56178257	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0064419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	104	265	0	ENST00000399503.3:c.3230C>G	p.Ser1077Ter	p.S1077*	ENST00000399503	NM_005921.1	1077	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0064419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	100	276	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
ERCC2	2068	MSKCC	GRCh37	19	45860569	45860569	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs757100147		P-0064419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	133	300	0	ENST00000391945.4:c.1438A>G	p.Thr480Ala	p.T480A	ENST00000391945	NM_000400.3	480	Acc/Gcc																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150935552	150935552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	75	227	0	ENST00000271640.5:c.3394G>A	p.Asp1132Asn	p.D1132N	ENST00000271640	NM_001145415.1	1132	Gat/Aat																																																																															
CCNE1	898	MSKCC	GRCh37	19	30303679	30303679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	134	313	0	ENST00000262643.3:c.107C>T	p.Thr36Ile	p.T36I	ENST00000262643	NM_001238.2	36	aCc/aTc																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99808294	99808294	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	17	109	0	ENST00000280892.6:c.395G>T	p.Arg132Leu	p.R132L	ENST00000280892	NM_001130678.1	132	cGa/cTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105676	27105676	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0064886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			752	138	533	0	ENST00000324856.7:c.5287G>T	p.Glu1763Ter	p.E1763*	ENST00000324856	NM_006015.4	1763	Gaa/Taa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111503	8111507	+	frameshift_variant	Frame_Shift_Del	DEL	GGAAT	GGAAT	-			P-0064886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	105	491	0	ENST00000346208.3:c.990_994del	p.Arg330SerfsTer20	p.R330Sfs*20	ENST00000346208		330	aGGAAT/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7577572	7577573	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTA			P-0064886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	105	441	0	ENST00000269305.4:c.706_708dup	p.Tyr236dup	p.Y236dup	ENST00000269305	NM_001126112.2	236	-/TAC																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22153395	22153395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064886-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	112	467	0	ENST00000215832.6:c.515G>A	p.Arg172His	p.R172H	ENST00000215832	NM_002745.4	172	cGt/cAt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255388	16255388	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			422	182	471	0	ENST00000375759.3:c.2653G>C	p.Glu885Gln	p.E885Q	ENST00000375759	NM_015001.2	885	Gag/Cag																																																																															
CDC73	79577	MSKCC	GRCh37	1	193181537	193181539	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			53	23	375	0	ENST00000367435.3:c.1086_1088del	p.Ile364del	p.I364del	ENST00000367435	NM_024529.4	362	ATC/-																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741510	17741510	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs767856910		P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1200	523	490	0	ENST00000250003.3:c.181G>C	p.Glu61Gln	p.E61Q	ENST00000250003	NM_002478.4	61	Gag/Cag																																																																															
APLNR	187	MSKCC	GRCh37	11	57003536	57003536	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	C	rs137997556		P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1401	512	546	0	ENST00000257254.3:c.943C>G	p.Arg315Gly	p.R315G	ENST00000257254		315	Cgc/Ggc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941459	71941459	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			685	457	548	0	ENST00000298229.2:c.1144G>C	p.Glu382Gln	p.E382Q	ENST00000298229	NM_001567.3	382	Gag/Cag																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434348	121434348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1049	395	470	0	ENST00000257555.6:c.1112C>T	p.Ser371Leu	p.S371L	ENST00000257555		371	tCa/tTa																																																																															
POLE	5426	MSKCC	GRCh37	12	133202290	133202290	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1290	516	489	0	ENST00000320574.5:c.6598G>C	p.Glu2200Gln	p.E2200Q	ENST00000320574	NM_006231.2	2200	Gag/Cag																																																																															
RB1	5925	MSKCC	GRCh37	13	48937001	48937005	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAA	CAGAA	-			P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			131	74	334	0	ENST00000267163.4:c.772_776del	p.Asn258GlufsTer11	p.N258Efs*11	ENST00000267163	NM_000321.2	257	CAGAAc/c																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121829	2121829	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs991714565		P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1489	411	485	0	ENST00000219476.3:c.1991C>T	p.Ser664Phe	p.S664F	ENST00000219476	NM_000548.3	664	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519986		P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			525	423	472	0	ENST00000269305.4:c.809T>G	p.Phe270Cys	p.F270C	ENST00000269305	NM_001126112.2	270	tTt/tGt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011149	12011149	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			30	14	328	0	ENST00000353533.5:c.556G>C	p.Asp186His	p.D186H	ENST00000353533	NM_003010.3	186	Gat/Cat																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011197	12011197	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			28	18	283	0	ENST00000353533.5:c.604G>C	p.Glu202Gln	p.E202Q	ENST00000353533	NM_003010.3	202	Gaa/Caa																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6227114	6227114	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1065	469	446	0	ENST00000252674.7:c.421-1G>C		p.X141_splice	ENST00000252674	NM_005934.3	141																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36223013	36223013	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1714	739	653	0	ENST00000222270.7:c.5642C>G	p.Ser1881Cys	p.S1881C	ENST00000222270	NM_014727.1	1881	tCc/tGc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31389228	31389228	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			658	331	362	0	ENST00000328111.2:c.2141T>G	p.Leu714Arg	p.L714R	ENST00000328111	NM_006892.3	714	cTg/cGg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46266471	46266471	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			101	22	412	0	ENST00000371998.3:c.2456C>G	p.Ser819Ter	p.S819*	ENST00000371998		819	tCa/tGa																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504433	186504433	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			125	16	323	0	ENST00000323963.5:c.770A>G	p.Glu257Gly	p.E257G	ENST00000323963		257	gAg/gGg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55146495	55146495	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			179	39	365	0	ENST00000257290.5:c.2169A>C	p.Leu723Phe	p.L723F	ENST00000257290	NM_006206.4	723	ttA/ttC																																																																															
KDR	3791	MSKCC	GRCh37	4	55971001	55971001	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			484	426	398	1	ENST00000263923.4:c.1796C>A	p.Pro599His	p.P599H	ENST00000263923	NM_002253.2	599	cCc/cAc																																																																															
GAB1	2549	MSKCC	GRCh37	4	144359469	144359469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			143	81	417	0	ENST00000262994.4:c.911C>T	p.Ser304Phe	p.S304F	ENST00000262994	NM_002039.3	304	tCt/tTt																																																																															
GAB1	2549	MSKCC	GRCh37	4	144359510	144359510	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	120	429	1	ENST00000262994.4:c.952C>T	p.Gln318Ter	p.Q318*	ENST00000262994	NM_002039.3	318	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538277	187538277	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			67	23	388	0	ENST00000441802.2:c.8957G>T	p.Arg2986Met	p.R2986M	ENST00000441802	NM_005245.3	2986	aGg/aTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	80037344	80037344	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			70	22	308	0	ENST00000265081.6:c.1631del	p.Asn544IlefsTer11	p.N544Ifs*11	ENST00000265081	NM_002439.4	544	Aat/at																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971130	13971130	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs541367225		P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			761	256	406	0	ENST00000405192.2:c.799T>G	p.Ser267Ala	p.S267A	ENST00000405192	NM_001163147.1	267	Tca/Gca																																																																															
ABL1	25	MSKCC	GRCh37	9	133760036	133760036	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs770760322		P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			923	356	443	0	ENST00000318560.5:c.2359G>T	p.Val787Leu	p.V787L	ENST00000318560	NM_005157.4	787	Gtg/Ttg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399257	139399257	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1264	470	498	0	ENST00000277541.6:c.4886del	p.His1629ProfsTer20	p.H1629Pfs*20	ENST00000277541	NM_017617.3	1629	cAc/cc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729942	41729942	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200425294		P-0065456-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			817	104	685	0	ENST00000242208.4:c.587G>A	p.Gly196Asp	p.G196D	ENST00000242208	NM_002192.2	196	gGc/gAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151932982	151932982	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs772146328		P-0065456-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	24	106	0	ENST00000262189.6:c.2689C>T	p.Arg897Ter	p.R897*	ENST00000262189	NM_170606.2	897	Cga/Tga																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150919387	150919387	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065456-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	79	570	0	ENST00000271640.5:c.1166A>G	p.Tyr389Cys	p.Y389C	ENST00000271640	NM_001145415.1	389	tAt/tGt																																																																															
KLF5	688	MSKCC	GRCh37	13	73636864	73636865	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0065456-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			804	105	551	0	ENST00000377687.4:c.1129dup	p.Tyr377LeufsTer24	p.Y377Lfs*24	ENST00000377687	NM_001730.3	376	gat/gaTt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748442	162748442	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	225	530	0	ENST00000367921.3:c.2356G>C	p.Glu786Gln	p.E786Q	ENST00000367921	NM_006182.2	786	Gaa/Caa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646801	23646802	+	frameshift_variant	Frame_Shift_Ins	INS	TT	TT	AAA			P-0066243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	202	477	0	ENST00000261584.4:c.1065_1066delinsTTT	p.Leu355PhefsTer6	p.L355Ffs*6	ENST00000261584	NM_024675.3	355	ttAAaa/ttTTTaa																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249380	110249380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	230	510	0	ENST00000374672.4:c.1193G>A	p.Cys398Tyr	p.C398Y	ENST00000374672	NM_004235.4	398	tGt/tAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0066749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	282	615	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	140	580	0	ENST00000342988.3:c.1055G>T	p.Gly352Val	p.G352V	ENST00000342988	NM_005359.5	352	gGa/gTa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11217240	11217240	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148486930		P-0066749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	126	535	0	ENST00000361445.4:c.4438C>T	p.Arg1480Cys	p.R1480C	ENST00000361445	NM_004958.3	1480	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178941944	178941944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	97	430	0	ENST00000263967.3:c.2263C>G	p.Leu755Val	p.L755V	ENST00000263967	NM_006218.2	755	Cta/Gta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	111	325	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969941	161969941	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs529808032		P-0066749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	95	417	0	ENST00000366898.1:c.1028C>T	p.Pro343Leu	p.P343L	ENST00000366898	NM_004562.2	343	cCg/cTg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28597539	28597539	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			786	65	544	0	ENST00000241453.7:c.2366T>A	p.Leu789His	p.L789H	ENST00000241453	NM_004119.2	789	cTt/cAt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807800	1807800	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			736	161	728	1	ENST00000260795.2:c.1859C>A	p.Ala620Asp	p.A620D	ENST00000260795		620	gCc/gAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0025657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	64	419	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22221708	22221709	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCG	rs770506771		P-0025657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	15	56	1	ENST00000215832.6:c.20_22dup	p.Ala7dup	p.A7dup	ENST00000215832	NM_002745.4	7	ggc/gCGGgc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35861055	35861055	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	37	403	0	ENST00000303115.3:c.184C>A	p.Pro62Thr	p.P62T	ENST00000303115	NM_002185.3	62	Cca/Aca																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073643	8073643	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746627277		P-0025657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	35	384	1	ENST00000377482.5:c.1016C>T	p.Pro339Leu	p.P339L	ENST00000377482	NM_018948.3	339	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578209	7578209	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	125	680	0	ENST00000269305.4:c.640C>G	p.His214Asp	p.H214D	ENST00000269305	NM_001126112.2	214	Cat/Gat																																																																															
MET	4233	MSKCC	GRCh37	7	116411879	116411900	+	splice_region_variant,intron_variant	Splice_Region	DEL	CTCTTTCTTTCTCTCTGTTTTA	CTCTTTCTTTCTCTCTGTTTTA	-			P-0025657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1241	1694	894	0	ENST00000397752.3:c.2888-24_2888-3del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
PMS1	5378	MSKCC	GRCh37	2	190728798	190728798	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs201205478		P-0032966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	108	322	0	ENST00000441310.2:c.2186A>G	p.Asn729Ser	p.N729S	ENST00000441310	NM_000534.4	729	aAt/aGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	147	558	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0034853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	155	601	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0034853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	189	325	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25990499	25990503	+	frameshift_variant	Frame_Shift_Del	DEL	AGTAA	AGTAA	-			P-0034853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	247	530	0	ENST00000435504.4:c.724_728del	p.Leu242ArgfsTer11	p.L242Rfs*11	ENST00000435504		242	TTACTa/a																																																																															
KDR	3791	MSKCC	GRCh37	4	55968610	55968610	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374980446		P-0034853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	135	635	0	ENST00000263923.4:c.2053G>A	p.Glu685Lys	p.E685K	ENST00000263923	NM_002253.2	685	Gaa/Aaa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838032	156838032	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	145	767	0	ENST00000524377.1:c.565G>C	p.Ala189Pro	p.A189P	ENST00000524377	NM_002529.3	189	Gcc/Ccc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477083	67477083	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	102	447	0	ENST00000327367.4:c.890A>G	p.Tyr297Cys	p.Y297C	ENST00000327367	NM_005902.3	297	tAc/tGc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18966760	18966760	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	58	695	0	ENST00000262803.5:c.1571A>T	p.Asn524Ile	p.N524I	ENST00000262803	NM_002911.3	524	aAc/aTc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911551	134911551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	118	465	0	ENST00000398015.3:c.2016G>A	p.Met672Ile	p.M672I	ENST00000398015	NM_004441.4	672	atG/atA																																																																															
KIT	3815	MSKCC	GRCh37	4	55604607	55604607	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	52	467	0	ENST00000288135.5:c.2815T>G	p.Leu939Val	p.L939V	ENST00000288135	NM_000222.2	939	Tta/Gta																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652231	36652231	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	133	530	0	ENST00000244741.5:c.355del	p.Val120CysfsTer28	p.V120Cfs*28	ENST00000244741	NM_000389.4	118	aCc/ac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0039618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	133	385	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0039618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	99	859	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
HRAS	3265	MSKCC	GRCh37	11	534285	534285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894226		P-0039618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	77	754	0	ENST00000311189.7:c.38G>A	p.Gly13Asp	p.G13D	ENST00000311189		13	gGt/gAt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65305323	65305323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	84	529	0	ENST00000342505.4:c.2805G>T	p.Glu935Asp	p.E935D	ENST00000342505	NM_002227.2	935	gaG/gaT																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212178	5212178	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1393306881		P-0039618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	127	943	1	ENST00000357368.4:c.4853A>G	p.Tyr1618Cys	p.Y1618C	ENST00000357368	NM_002850.3	1618	tAt/tGt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862749	9862749	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150316865		P-0040080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	149	511	1	ENST00000330684.3:c.2554G>A	p.Val852Met	p.V852M	ENST00000330684	NM_001134407.1	852	Gtg/Atg																																																																															
MPL	4352	MSKCC	GRCh37	1	43805653	43805653	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765133601		P-0040080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	50	416	0	ENST00000372470.3:c.709G>A	p.Glu237Lys	p.E237K	ENST00000372470	NM_005373.2	237	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0040753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	208	374	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29550494	29550497	+	frameshift_variant	Frame_Shift_Del	DEL	TAAC	TAAC	-	rs1277850570		P-0040753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	98	298	0	ENST00000358273.4:c.1756_1759del	p.Thr586ValfsTer18	p.T586Vfs*18	ENST00000358273	NM_001042492.2	585	tTAACt/tt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928226	178928226	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519872		P-0040753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	237	420	1	ENST00000263967.3:c.1412C>T	p.Pro471Leu	p.P471L	ENST00000263967	NM_006218.2	471	cCa/cTa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179362	56179363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0040753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	66	214	0	ENST00000399503.3:c.3676_3677dup	p.Pro1228TyrfsTer18	p.P1228Yfs*18	ENST00000399503	NM_005921.1	1225	-/AC																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	67	188	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs775126020		P-0040889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	104	348	0	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579317	7579317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	230	445	0	ENST00000269305.4:c.370T>C	p.Cys124Arg	p.C124R	ENST00000269305	NM_001126112.2	124	Tgc/Cgc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162680	47162680	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757222335		P-0040889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	172	297	0	ENST00000409792.3:c.3446G>A	p.Ser1149Asn	p.S1149N	ENST00000409792	NM_014159.6	1149	aGt/aAt																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926897	112926897	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs397507548		P-0040889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	146	358	0	ENST00000351677.2:c.1517A>C	p.Gln506Pro	p.Q506P	ENST00000351677	NM_002834.3	506	cAg/cCg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251653	212251653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	35	358	0	ENST00000342788.4:c.3406G>A	p.Ala1136Thr	p.A1136T	ENST00000342788	NM_005235.2	1136	Gcc/Acc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143326445	143326445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	73	287	0	ENST00000262992.4:c.169C>T	p.Arg57Cys	p.R57C	ENST00000262992	NM_001101669.1	57	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs864622237		P-0041410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	399	545	0	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115263323	115263323	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	380	596	0	ENST00000438362.2:c.2027A>T	p.Glu676Val	p.E676V	ENST00000438362	NM_001242891.1	676	gAg/gTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115978	8116009	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	ATGGGTTAGAGCCCTGCTCGATGCTCACAGGG	ATGGGTTAGAGCCCTGCTCGATGCTCACAGGG	CAT			P-0041410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	183	297	2	ENST00000346208.3:c.1324_*23delinsCAT		p.*442*	ENST00000346208		442																																																																																
POLE	5426	MSKCC	GRCh37	12	133225636	133225636	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	221	621	0	ENST00000320574.5:c.4028G>T	p.Gly1343Val	p.G1343V	ENST00000320574	NM_006231.2	1343	gGc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0041433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	26	206	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0041433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	63	337	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884482	151884482	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1418271614		P-0041433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	62	303	0	ENST00000262189.6:c.4873G>A	p.Glu1625Lys	p.E1625K	ENST00000262189	NM_170606.2	1625	Gaa/Aaa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827835	72827835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	30	469	0	ENST00000268489.5:c.8746G>A	p.Glu2916Lys	p.E2916K	ENST00000268489	NM_006885.3	2916	Gaa/Aaa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016549	12016549	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0041433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	16	152	0	ENST00000353533.5:c.686-1G>C		p.X229_splice	ENST00000353533	NM_003010.3	229																																																																																
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	331	619	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0041973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	93	283	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	27	190	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																															
TET1	80312	MSKCC	GRCh37	10	70446318	70446318	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1429461725		P-0041973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	164	491	0	ENST00000373644.4:c.5258G>A	p.Arg1753His	p.R1753H	ENST00000373644	NM_030625.2	1753	cGt/cAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920444	114920469	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGTGCAGGTATATTACCACTGCGAGG	CGTGCAGGTATATTACCACTGCGAGG	-			P-0041973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	88	405	0	ENST00000543371.1:c.1386_1391+20del		p.X462_splice	ENST00000543371	NM_001198531.1	462																																																																																
NCOR1	9611	MSKCC	GRCh37	17	16012157	16012157	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	19	548	0	ENST00000268712.3:c.2125C>T	p.Gln709Ter	p.Q709*	ENST00000268712	NM_006311.3	709	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936096	178936096	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519940		P-0042002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	101	589	1	ENST00000263967.3:c.1638G>T	p.Gln546His	p.Q546H	ENST00000263967	NM_006218.2	546	caG/caT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	160	412	0	ENST00000263967.3:c.3132T>A	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaA																																																																															
CCND3	896	MSKCC	GRCh37	6	41903779	41903779	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	78	641	1	ENST00000372991.4:c.778C>T	p.Gln260Ter	p.Q260*	ENST00000372991	NM_001760.3	260	Cag/Tag																																																																															
JAK3	3718	MSKCC	GRCh37	19	17952513	17952513	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199815093		P-0042002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	67	759	1	ENST00000458235.1:c.920C>T	p.Pro307Leu	p.P307L	ENST00000458235	NM_000215.3	307	cCg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49422898	49422898	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	74	683	0	ENST00000301067.7:c.14197G>C	p.Glu4733Gln	p.E4733Q	ENST00000301067	NM_003482.3	4733	Gag/Cag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852446	63852446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	79	607	2	ENST00000279873.7:c.3224C>T	p.Ser1075Phe	p.S1075F	ENST00000279873	NM_032199.2	1075	tCc/tTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375630	118375630	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	39	420	0	ENST00000534358.1:c.9023C>G	p.Ser3008Cys	p.S3008C	ENST00000534358	NM_005933.3	3008	tCt/tGt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375662	118375662	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	41	475	1	ENST00000534358.1:c.9055C>G	p.His3019Asp	p.H3019D	ENST00000534358	NM_005933.3	3019	Cat/Gat																																																																															
KDM5A	5927	MSKCC	GRCh37	12	431655	431655	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373480934		P-0042002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	22	520	0	ENST00000399788.2:c.2354G>A	p.Arg785Lys	p.R785K	ENST00000399788	NM_001042603.1	785	aGg/aAg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563132	21563132	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1206	97	720	1	ENST00000382592.4:c.787G>T	p.Glu263Ter	p.E263*	ENST00000382592	NM_014572.2	263	Gaa/Taa																																																																															
MGA	23269	MSKCC	GRCh37	15	42058501	42058501	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	16	414	0	ENST00000219905.7:c.8221G>C	p.Glu2741Gln	p.E2741Q	ENST00000219905	NM_001164273.1	2741	Gag/Cag																																																																															
MGA	23269	MSKCC	GRCh37	15	42058535	42058535	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	13	356	0	ENST00000219905.7:c.8255G>C	p.Arg2752Thr	p.R2752T	ENST00000219905	NM_001164273.1	2752	aGa/aCa																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7977046	7977046	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	78	516	0	ENST00000319144.4:c.1684G>C	p.Glu562Gln	p.E562Q	ENST00000319144	NM_001139.2	562	Gag/Cag																																																																															
AURKB	9212	MSKCC	GRCh37	17	8109860	8109860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	52	606	0	ENST00000585124.1:c.635G>A	p.Gly212Glu	p.G212E	ENST00000585124	NM_004217.3	212	gGa/gAa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965945	25965945	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1413476740		P-0042002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	71	665	0	ENST00000435504.4:c.3261G>C	p.Gln1087His	p.Q1087H	ENST00000435504		1087	caG/caC																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62290847	62290847	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A			P-0042002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	47	369	0	ENST00000482936.1:c.92G>A	p.Cys31Tyr	p.C31Y	ENST00000482936		31	tGt/tAt																																																																															
KIT	3815	MSKCC	GRCh37	4	55604653	55604653	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	66	587	0	ENST00000288135.5:c.2861C>G	p.Ser954Cys	p.S954C	ENST00000288135	NM_000222.2	954	tCt/tGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115849	8115850	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	305	766	0	ENST00000346208.3:c.1196dup	p.His399GlnfsTer108	p.H399Qfs*108	ENST00000346208		399	cac/cAac																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0042625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	112	414	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0042625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	97	656	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371524413		P-0042625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	305	918	0	ENST00000269305.4:c.467G>A	p.Arg156His	p.R156H	ENST00000269305	NM_001126112.2	156	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs786201057		P-0042625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	203	597	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911607	134911607	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1384145752		P-0042625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	100	511	0	ENST00000398015.3:c.2072G>A	p.Arg691Gln	p.R691Q	ENST00000398015	NM_004441.4	691	cGg/cAg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943988	71943988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	53	749	2	ENST00000298229.2:c.1921C>T	p.Arg641Trp	p.R641W	ENST00000298229	NM_001567.3	641	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175330	112175331	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAGGCA			P-0042625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	36	242	0	ENST00000257430.4:c.4041_4047dup	p.Lys1350GlnfsTer6	p.K1350Qfs*6	ENST00000257430	NM_000038.5	1347	gcc/gCCAGGCAcc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562790	21562790	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1327443204		P-0042785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	173	514	0	ENST00000382592.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000382592	NM_014572.2	377	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579447	7579447	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	333	639	0	ENST00000269305.4:c.240del	p.Thr81HisfsTer42	p.T81Hfs*42	ENST00000269305	NM_001126112.2	80	ccT/cc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	227	514	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859638	57859638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	102	576	0	ENST00000228682.2:c.692C>T	p.Ser231Phe	p.S231F	ENST00000228682	NM_005269.2	231	tCt/tTt																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881515	111881515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	56	542	1	ENST00000393256.3:c.193G>A	p.Ala65Thr	p.A65T	ENST00000393256	NM_006538.4	65	Gcc/Acc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111495	8111496	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGA			P-0044040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	180	689	0	ENST00000346208.3:c.982_985dup	p.Arg329MetfsTer24	p.R329Mfs*24	ENST00000346208		327	-/TGGA																																																																															
CASP8	841	MSKCC	GRCh37	2	202137474	202137474	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	139	573	0	ENST00000358485.4:c.702del	p.Asn235ThrfsTer30	p.N235Tfs*30	ENST00000358485	NM_001080125.1	234	atC/at																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0055990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	190	271	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0055990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	232	597	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106036	8106036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	224	454	0	ENST00000346208.3:c.856G>A	p.Ala286Thr	p.A286T	ENST00000346208		286	Gcc/Acc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8525018	8525018	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1329822805		P-0055990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	73	195	0	ENST00000356435.5:c.586C>T	p.Gln196Ter	p.Q196*	ENST00000356435		196	Cag/Tag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340429	8340429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	270	422	0	ENST00000356435.5:c.5167G>A	p.Glu1723Lys	p.E1723K	ENST00000356435		1723	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711961	89711962	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0055990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	159	307	0	ENST00000371953.3:c.581dup	p.Leu194PhefsTer8	p.L194Ffs*8	ENST00000371953	NM_000314.4	193	-/T																																																																															
MED12	9968	MSKCC	GRCh37	X	70339874	70339874	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0055990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	78	438	0	ENST00000374080.3:c.407T>G	p.Phe136Cys	p.F136C	ENST00000374080		136	tTc/tGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0056107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	55	335	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259760	16259760	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747967254		P-0056107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	86	473	0	ENST00000375759.3:c.7025G>A	p.Arg2342Gln	p.R2342Q	ENST00000375759	NM_015001.2	2342	cGa/cAa																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628554	90628554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	80	828	0	ENST00000330062.3:c.1033G>A	p.Glu345Lys	p.E345K	ENST00000330062	NM_002168.2	345	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68842334	68842334	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	99	361	0	ENST00000261769.5:c.397del	p.Ser133LeufsTer82	p.S133Lfs*82	ENST00000261769	NM_004360.3	132	gTt/gt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937706	36937706	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	58	732	0	ENST00000361632.4:c.1032G>C	p.Gln344His	p.Q344H	ENST00000361632		344	caG/caC																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416854	121416854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	65	848	0	ENST00000257555.6:c.283G>A	p.Glu95Lys	p.E95K	ENST00000257555		95	Gag/Aag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16001811	16001811	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0056107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	27	318	0	ENST00000268712.3:c.2691-1G>A		p.X897_splice	ENST00000268712	NM_006311.3	897																																																																																
CDK12	51755	MSKCC	GRCh37	17	37687415	37687415	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	66	452	1	ENST00000447079.4:c.4319A>G	p.Tyr1440Cys	p.Y1440C	ENST00000447079	NM_015083.1	1440	tAt/tGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111495	8111496	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGA			P-0056249-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			684	402	808	0	ENST00000346208.3:c.982_985dup	p.Arg329MetfsTer24	p.R329Mfs*24	ENST00000346208		327	-/TGGA																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021637	31021637	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1264792645		P-0056249-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			544	300	694	0	ENST00000375687.4:c.1636C>T	p.Gln546Ter	p.Q546*	ENST00000375687	NM_015338.5	546	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120385	70120385	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056249-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			2169	573	1391	0	ENST00000245479.2:c.1387T>C	p.Tyr463His	p.Y463H	ENST00000245479	NM_000346.3	463	Tac/Cac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3842074	3842074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056249-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			307	171	395	0	ENST00000262367.5:c.1238G>A	p.Arg413Gln	p.R413Q	ENST00000262367	NM_004380.2	413	cGa/cAa																																																																															
LYN	4067	MSKCC	GRCh37	8	56911050	56911050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056249-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			397	236	534	0	ENST00000519728.1:c.1196C>A	p.Ala399Glu	p.A399E	ENST00000519728	NM_002350.3	399	gCa/gAa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0056282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	410	568	0	ENST00000346208.3:c.1220dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057826	27057826	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	435	621	0	ENST00000324856.7:c.1534C>T	p.Gln512Ter	p.Q512*	ENST00000324856	NM_006015.4	512	Cag/Tag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118352585	118352585	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	341	411	0	ENST00000534358.1:c.3790C>T	p.Arg1264Ter	p.R1264*	ENST00000534358	NM_005933.3	1264	Cga/Tga																																																																															
RARA	5914	MSKCC	GRCh37	17	38508666	38508666	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1298	171	591	0	ENST00000254066.5:c.714G>T	p.Lys238Asn	p.K238N	ENST00000254066	NM_000964.3	238	aaG/aaT																																																																															
LATS1	9113	MSKCC	GRCh37	6	149982960	149982960	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0056282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	48	410	0	ENST00000253339.5:c.3298G>T	p.Glu1100Ter	p.E1100*	ENST00000253339		1100	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0056678-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			261	255	326	6	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0056678-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			314	255	250	2	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
RB1	5925	MSKCC	GRCh37	13	48934194	48934194	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056678-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			20	236	312	2	ENST00000267163.4:c.649C>T	p.Gln217Ter	p.Q217*	ENST00000267163	NM_000321.2	217	Cag/Tag																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683713	162683713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747891099		P-0056678-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			412	379	401	3	ENST00000366898.1:c.256G>A	p.Asp86Asn	p.D86N	ENST00000366898	NM_004562.2	86	Gac/Aac																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257121	19257121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1368664931		P-0056678-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			31	418	463	4	ENST00000162023.5:c.842C>T	p.Ser281Leu	p.S281L	ENST00000162023		281	tCg/tTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7125350	7125350	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762687424		P-0056678-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			541	559	567	5	ENST00000302850.5:c.3202C>T	p.Arg1068Trp	p.R1068W	ENST00000302850	NM_000208.2	1068	Cgg/Tgg																																																																															
CIC	23152	MSKCC	GRCh37	19	42791738	42791738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056678-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			526	514	432	3	ENST00000575354.2:c.624G>A	p.Met208Ile	p.M208I	ENST00000575354	NM_015125.3	208	atG/atA																																																																															
LATS2	26524	MSKCC	GRCh37	13	21565517	21565517	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056678-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			899	403	431	8	ENST00000382592.4:c.369G>C	p.Gln123His	p.Q123H	ENST00000382592	NM_014572.2	123	caG/caC																																																																															
AXL	558	MSKCC	GRCh37	19	41743997	41743997	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056678-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			608	528	617	7	ENST00000301178.4:c.932G>C	p.Cys311Ser	p.C311S	ENST00000301178	NM_021913.4	311	tGc/tCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0057179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	438	719	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829029	72829029	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	525	836	0	ENST00000268489.5:c.7552C>T	p.Gln2518Ter	p.Q2518*	ENST00000268489	NM_006885.3	2518	Caa/Taa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94212922	94212922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	70	310	0	ENST00000323929.3:c.320C>T	p.Pro107Leu	p.P107L	ENST00000323929	NM_005591.3	107	cCa/cTa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877467	28877467	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	93	572	0	ENST00000282397.4:c.3854C>A	p.Ser1285Tyr	p.S1285Y	ENST00000282397	NM_002019.4	1285	tCt/tAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29557327	29557327	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs1135402839		P-0058187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	91	289	0	ENST00000358273.4:c.3040A>T	p.Lys1014Ter	p.K1014*	ENST00000358273	NM_001042492.2	1014	Aaa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29679432	29679433	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0058187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	40	381	1	ENST00000358273.4:c.7615_7615+1delinsTT		p.X2539_splice	ENST00000358273	NM_001042492.2	2539																																																																																
PPARG	5468	MSKCC	GRCh37	3	12475586	12475586	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	203	583	0	ENST00000287820.6:c.1460C>A	p.Thr487Lys	p.T487K	ENST00000287820	NM_015869.4	487	aCg/aAg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	24	434	4	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	37	344	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	14	377	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	149	574	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	22	464	1	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649922	88649922	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	14	212	0	ENST00000372037.3:c.176del	p.Leu59Ter	p.L59*	ENST00000372037	NM_004329.2	57	ccT/cc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	14	352	0	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	21	391	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	28	575	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	44	516	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288710	15288710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			66	22	328	0	ENST00000263388.2:c.4029del	p.Cys1344ValfsTer76	p.C1344Vfs*76	ENST00000263388	NM_000435.2	1343	ccC/cc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221340	1221340	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	63	521	0	ENST00000326873.7:c.862+1G>A		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																																
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	51	486	4	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	33	305	0	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	41	363	0	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	37	414	1	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs771001164		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	23	461	4	ENST00000307078.5:c.1214_1215del	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099332	157099333	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA	rs780268024		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	30	457	0	ENST00000346085.5:c.285_287dup	p.His96dup	p.H96dup	ENST00000346085	NM_020732.3	96	gcc/gcCCAc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216091	7216091	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1332522267		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	55	420	0	ENST00000380728.2:c.968G>A	p.Arg323Gln	p.R323Q	ENST00000380728		323	cGa/cAa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199945	138199945	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	45	485	0	ENST00000237289.4:c.1368del	p.Pro457LeufsTer20	p.P457Lfs*20	ENST00000237289	NM_001270507.1	455	Ggg/gg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486281	8486281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	21	416	0	ENST00000356435.5:c.2536C>T	p.Pro846Ser	p.P846S	ENST00000356435		846	Ccg/Tcg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324892	31324892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	18	422	0	ENST00000412585.2:c.44del	p.Ala15GlyfsTer5	p.A15Gfs*5	ENST00000412585	NM_005514.6	15	gCg/gg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589576	67589576	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1289537429		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	17	124	0	ENST00000274335.5:c.1344del	p.Lys448AsnfsTer32	p.K448Nfs*32	ENST00000274335		447	Aaa/aa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434685	99434685	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs543792941		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	45	492	0	ENST00000268035.6:c.772G>A	p.Gly258Ser	p.G258S	ENST00000268035	NM_000875.3	258	Ggt/Agt																																																																															
CDK8	1024	MSKCC	GRCh37	13	26970441	26970441	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	18	95	0	ENST00000381527.3:c.815del	p.Lys272ArgfsTer8	p.K272Rfs*8	ENST00000381527	NM_001260.1	270	atA/at																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	32	495	4	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304140	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	24	402	0	ENST00000355112.3:c.1543_1544del	p.Asn515Ter	p.N515*	ENST00000355112	NM_000057.2	512	ggAAaa/ggaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421586	49421586	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	53	441	0	ENST00000301067.7:c.14643G>T	p.Gln4881His	p.Q4881H	ENST00000301067	NM_003482.3	4881	caG/caT																																																																															
FANCA	2175	MSKCC	GRCh37	16	89871774	89871774	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144420697		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	38	367	0	ENST00000389301.3:c.623C>T	p.Ser208Leu	p.S208L	ENST00000389301	NM_000135.2	208	tCg/tTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984019	2984019	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41319046		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	21	430	0	ENST00000396946.4:c.511G>A	p.Val171Met	p.V171M	ENST00000396946	NM_032415.4	171	Gtg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437424	49437424	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	54	446	0	ENST00000301067.7:c.5461C>T	p.Gln1821Ter	p.Q1821*	ENST00000301067	NM_003482.3	1821	Cag/Tag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224532	36224532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759167832		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	39	507	0	ENST00000222270.7:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000222270	NM_014727.1	2332	Cgt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827463	72827463	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750717662		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	35	442	0	ENST00000268489.5:c.9118C>T	p.Arg3040Cys	p.R3040C	ENST00000268489	NM_006885.3	3040	Cgt/Tgt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670657	134670657	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1441537601		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	23	484	0	ENST00000398015.3:c.568C>T	p.Arg190Cys	p.R190C	ENST00000398015	NM_004441.4	190	Cgt/Tgt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15967427	15967427	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1468999160		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	48	403	2	ENST00000268712.3:c.5176C>T	p.Arg1726Trp	p.R1726W	ENST00000268712	NM_006311.3	1726	Cgg/Tgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170270	32170270	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187627302		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	25	478	0	ENST00000375023.3:c.3338G>A	p.Arg1113His	p.R1113H	ENST00000375023	NM_004557.3	1113	cGc/cAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120881	115120881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	33	495	0	ENST00000257566.3:c.125C>A	p.Pro42His	p.P42H	ENST00000257566	NM_016569.3	42	cCc/cAc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155367	185155367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs902931460		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	20	388	0	ENST00000265026.3:c.608C>T	p.Thr203Met	p.T203M	ENST00000265026	NM_004721.4	203	aCg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438550	49438550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	64	428	0	ENST00000301067.7:c.4940C>T	p.Thr1647Ile	p.T1647I	ENST00000301067	NM_003482.3	1647	aCc/aTc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967284	25967284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1338721842		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	23	443	0	ENST00000435504.4:c.1922G>A	p.Arg641His	p.R641H	ENST00000435504		641	cGt/cAt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048638	180048638	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	15	461	0	ENST00000261937.6:c.1924del	p.Arg642AlafsTer43	p.R642Afs*43	ENST00000261937	NM_182925.4	642	Cgc/gc																																																																															
ALK	238	MSKCC	GRCh37	2	30143059	30143059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	15	576	0	ENST00000389048.3:c.467G>A	p.Gly156Glu	p.G156E	ENST00000389048	NM_004304.4	156	gGg/gAg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468083	50468083	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775617502		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	22	494	0	ENST00000331340.3:c.1318G>A	p.Ala440Thr	p.A440T	ENST00000331340	NM_006060.4	440	Gcc/Acc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509083	66509083	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	11	265	0	ENST00000273854.3:c.244G>T	p.Gly82Trp	p.G82W	ENST00000273854	NM_004439.5	82	Ggg/Tgg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	40	344	4	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
NADK	65220	MSKCC	GRCh37	1	1684408	1684408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	30	482	0	ENST00000341426.5:c.1276C>T	p.His426Tyr	p.H426Y	ENST00000341426	NM_023018.4	426	Cat/Tat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101470	27101470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	36	408	0	ENST00000324856.7:c.4752G>T	p.Gln1584His	p.Q1584H	ENST00000324856	NM_006015.4	1584	caG/caT																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156848925	156848925	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	24	497	0	ENST00000524377.1:c.1817C>A	p.Pro606His	p.P606H	ENST00000524377	NM_002529.3	606	cCt/cAt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193218962	193218962	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	37	333	0	ENST00000367435.3:c.1520A>G	p.Asp507Gly	p.D507G	ENST00000367435	NM_024529.4	507	gAt/gGt																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230468634	230468634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	13	497	0	ENST00000525115.1:c.1022G>A	p.Gly341Glu	p.G341E	ENST00000525115		341	gGa/gAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114901001	114901001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	62	485	0	ENST00000543371.1:c.611T>C	p.Ile204Thr	p.I204T	ENST00000543371	NM_001198531.1	204	aTc/aCc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs767319284		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	22	514	1	ENST00000337652.1:c.1561dup	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																															
ATM	472	MSKCC	GRCh37	11	108123597	108123597	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	28	151	0	ENST00000278616.4:c.1856A>T	p.Asn619Ile	p.N619I	ENST00000278616	NM_000051.3	619	aAc/aTc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022717	12022717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	40	575	0	ENST00000396373.4:c.823C>T	p.His275Tyr	p.H275Y	ENST00000396373	NM_001987.4	275	Cac/Tac																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50479312	50479312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	13	323	0	ENST00000394963.4:c.160C>T	p.Pro54Ser	p.P54S	ENST00000394963	NM_003076.4	54	Ccc/Tcc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112194	115112194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	42	471	0	ENST00000257566.3:c.1546C>T	p.His516Tyr	p.H516Y	ENST00000257566	NM_016569.3	516	Cac/Tac																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436375	110436375	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	41	640	0	ENST00000375856.3:c.2026A>G	p.Met676Val	p.M676V	ENST00000375856	NM_003749.2	676	Atg/Gtg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988367	36988367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			67	12	353	0	ENST00000354822.5:c.286G>A	p.Ala96Thr	p.A96T	ENST00000354822	NM_001079668.2	96	Gcc/Acc																																																																															
B2M	567	MSKCC	GRCh37	15	45007852	45007852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	49	431	0	ENST00000558401.1:c.299G>A	p.Cys100Tyr	p.C100Y	ENST00000558401	NM_004048.2	100	tGc/tAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778099	3778099	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	32	541	0	ENST00000262367.5:c.6949del	p.Gln2317SerfsTer79	p.Q2317Sfs*79	ENST00000262367	NM_004380.2	2317	Cag/ag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265093	10265093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	24	514	0	ENST00000340748.4:c.1847C>T	p.Thr616Met	p.T616M	ENST00000340748		616	aCg/aTg																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626790	14626790	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	80	410	0	ENST00000254322.2:c.985A>G	p.Thr329Ala	p.T329A	ENST00000254322	NM_006145.1	329	Aca/Gca																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17386633	17386633	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	32	335	0	ENST00000359435.4:c.568A>G	p.Ile190Val	p.I190V	ENST00000359435	NM_001033549.1	190	Atc/Gtc																																																																															
AKT2	208	MSKCC	GRCh37	19	40741989	40741989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	32	592	0	ENST00000392038.2:c.983G>A	p.Gly328Asp	p.G328D	ENST00000392038	NM_001626.4	328	gGc/gAc																																																																															
CIC	23152	MSKCC	GRCh37	19	42798789	42798789	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	10	363	0	ENST00000575354.2:c.4361A>C	p.Glu1454Ala	p.E1454A	ENST00000575354	NM_015125.3	1454	gAg/gCg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26101034	26101034	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1266141035		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	50	371	0	ENST00000435504.4:c.57+1G>A		p.X19_splice	ENST00000435504		19																																																																																
ERCC3	2071	MSKCC	GRCh37	2	128046920	128046920	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	38	315	0	ENST00000285398.2:c.815T>C	p.Val272Ala	p.V272A	ENST00000285398	NM_000122.1	272	gTc/gCc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488661	212488661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	17	400	1	ENST00000342788.4:c.2188G>A	p.Gly730Arg	p.G730R	ENST00000342788	NM_005235.2	730	Gga/Aga																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663101	227663101	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	37	452	0	ENST00000305123.5:c.354G>T	p.Lys118Asn	p.K118N	ENST00000305123	NM_005544.2	118	aaG/aaT																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663307	227663307	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1469971676		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	37	417	0	ENST00000305123.5:c.148G>A	p.Glu50Lys	p.E50K	ENST00000305123	NM_005544.2	50	Gag/Aag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31025055	31025055	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	14	448	0	ENST00000375687.4:c.4540A>T	p.Ile1514Phe	p.I1514F	ENST00000375687	NM_015338.5	1514	Atc/Ttc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31395573	31395573	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	26	420	0	ENST00000328111.2:c.2426T>A	p.Phe809Tyr	p.F809Y	ENST00000328111	NM_006892.3	809	tTt/tAt																																																																															
EP300	2033	MSKCC	GRCh37	22	41545988	41545988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	32	474	0	ENST00000263253.7:c.2603C>T	p.Ala868Val	p.A868V	ENST00000263253	NM_001429.3	868	gCc/gTc																																																																															
EP300	2033	MSKCC	GRCh37	22	41554447	41554447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	39	312	0	ENST00000263253.7:c.3533A>G	p.Tyr1178Cys	p.Y1178C	ENST00000263253	NM_001429.3	1178	tAc/tGc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63976433	63976433	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201198489		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	23	388	0	ENST00000295900.6:c.1580G>A	p.Arg527Gln	p.R527Q	ENST00000295900	NM_000333.3	527	cGg/cAg																																																																															
MITF	4286	MSKCC	GRCh37	3	69987024	69987024	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200583343		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	20	430	0	ENST00000352241.4:c.406C>T	p.Arg136Trp	p.R136W	ENST00000352241	NM_198159.2	136	Cgg/Tgg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259484	89259484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	14	446	0	ENST00000336596.2:c.628G>A	p.Ala210Thr	p.A210T	ENST00000336596	NM_005233.5	210	Gct/Act																																																																															
REST	5978	MSKCC	GRCh37	4	57797518	57797518	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367963860		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	21	516	1	ENST00000309042.7:c.2494C>T	p.Arg832Trp	p.R832W	ENST00000309042	NM_005612.4	832	Cgg/Tgg																																																																															
TET2	54790	MSKCC	GRCh37	4	106157939	106157939	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	29	511	0	ENST00000380013.4:c.2843del	p.Lys948SerfsTer5	p.K948Sfs*5	ENST00000380013	NM_001127208.2	947	cAa/ca																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056197	26056197	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs548795634		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	78	539	0	ENST00000343677.2:c.460A>G	p.Thr154Ala	p.T154A	ENST00000343677	NM_005319.3	154	Aca/Gca																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508248	106508248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1335642291		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	29	486	0	ENST00000359195.3:c.242C>T	p.Thr81Ile	p.T81I	ENST00000359195	NM_002649.2	81	aCc/aTc																																																																															
POT1	25913	MSKCC	GRCh37	7	124532340	124532340	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	29	208	0	ENST00000357628.3:c.104del	p.Pro35HisfsTer3	p.P35Hfs*3	ENST00000357628	NM_015450.2	35	cCa/ca																																																																															
BRAF	673	MSKCC	GRCh37	7	140476770	140476770	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	34	329	0	ENST00000288602.6:c.1636A>G	p.Thr546Ala	p.T546A	ENST00000288602	NM_004333.4	546	Acc/Gcc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151842350	151842350	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs768809958		P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	44	442	0	ENST00000262189.6:c.14062A>G	p.Thr4688Ala	p.T4688A	ENST00000262189	NM_170606.2	4688	Acc/Gcc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873405	151873405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	34	465	0	ENST00000262189.6:c.9133C>T	p.Pro3045Ser	p.P3045S	ENST00000262189	NM_170606.2	3045	Ccc/Tcc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879307	151879307	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	46	488	0	ENST00000262189.6:c.5638C>T	p.Gln1880Ter	p.Q1880*	ENST00000262189	NM_170606.2	1880	Caa/Taa																																																																															
AGO2	27161	MSKCC	GRCh37	8	141561505	141561505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	39	473	0	ENST00000220592.5:c.1300G>A	p.Val434Ile	p.V434I	ENST00000220592	NM_012154.3	434	Gtc/Atc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250314	110250314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	18	498	0	ENST00000374672.4:c.361G>A	p.Ala121Thr	p.A121T	ENST00000374672	NM_004235.4	121	Gcc/Acc																																																																															
MED12	9968	MSKCC	GRCh37	X	70339293	70339293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	19	308	0	ENST00000374080.3:c.170G>A	p.Gly57Asp	p.G57D	ENST00000374080		57	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0058657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	165	418	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0058657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	52	439	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
ALK	238	MSKCC	GRCh37	2	29473981	29473981	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768366852		P-0058657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	80	300	0	ENST00000389048.3:c.2194G>A	p.Asp732Asn	p.D732N	ENST00000389048	NM_004304.4	732	Gac/Aac																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069076	5069076	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	25	286	0	ENST00000381652.3:c.1381G>T	p.Glu461Ter	p.E461*	ENST00000381652	NM_004972.3	461	Gag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41408924	41408924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778928297		P-0058657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	216	301	0	ENST00000373198.4:c.502G>A	p.Val168Ile	p.V168I	ENST00000373198	NM_133170.3	168	Gtc/Atc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245831	5245831	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	105	387	0	ENST00000357368.4:c.944C>A	p.Ser315Tyr	p.S315Y	ENST00000357368	NM_002850.3	315	tCc/tAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55151579	55151579	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	39	230	0	ENST00000257290.5:c.2365G>T	p.Gly789Cys	p.G789C	ENST00000257290	NM_006206.4	789	Ggc/Tgc																																																																															
SDHA	6389	MSKCC	GRCh37	5	223625	223625	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	52	201	0	ENST00000264932.6:c.92G>T	p.Arg31Leu	p.R31L	ENST00000264932	NM_004168.2	31	cGa/cTa																																																																															
APC	324	MSKCC	GRCh37	5	112174946	112174947	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCACA			P-0058657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	116	339	0	ENST00000257430.4:c.3658_3662dup	p.Ser1222HisfsTer45	p.S1222Hfs*45	ENST00000257430	NM_000038.5	1219	tcc/tCCACAcc																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250597	26250597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058657-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			724	44	483	0	ENST00000446824.2:c.237C>A	p.Phe79Leu	p.F79L	ENST00000446824	NM_021018.2	79	ttC/ttA																																																																															
KIT	3815	MSKCC	GRCh37	4	55599320	55599320	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913506		P-0058865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	147	355	0	ENST00000288135.5:c.2446G>C	p.Asp816His	p.D816H	ENST00000288135	NM_000222.2	816	Gac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0058865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	294	399	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678335	88678335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	108	403	0	ENST00000360948.2:c.1201C>T	p.Pro401Ser	p.P401S	ENST00000360948	NM_001012338.2	401	Cca/Tca																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726433	46726433	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145441107		P-0058865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	339	551	0	ENST00000371975.4:c.512G>A	p.Arg171Gln	p.R171Q	ENST00000371975	NM_003579.3	171	cGg/cAg																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125514017	125514017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	222	395	0	ENST00000428830.2:c.955C>T	p.Pro319Ser	p.P319S	ENST00000428830	NM_001114121.2	319	Cca/Tca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49422693	49422693	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	320	507	0	ENST00000301067.7:c.14300G>C	p.Gly4767Ala	p.G4767A	ENST00000301067	NM_003482.3	4767	gGa/gCa																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51507343	51507343	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	95	353	0	ENST00000260433.2:c.945G>C	p.Leu315Phe	p.L315F	ENST00000260433		315	ttG/ttC																																																																															
PALB2	79728	MSKCC	GRCh37	16	23649180	23649180	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	200	293	0	ENST00000261584.4:c.202A>G	p.Lys68Glu	p.K68E	ENST00000261584	NM_024675.3	68	Aaa/Gaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68845593	68845593	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	139	392	0	ENST00000261769.5:c.839C>G	p.Ser280Cys	p.S280C	ENST00000261769	NM_004360.3	280	tCt/tGt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78727874	78727874	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	135	414	0	ENST00000306801.3:c.719G>C	p.Cys240Ser	p.C240S	ENST00000306801	NM_020761.2	240	tGc/tCc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212570060	212570060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	296	349	0	ENST00000342788.4:c.1181C>T	p.Thr394Ile	p.T394I	ENST00000342788	NM_005235.2	394	aCa/aTa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66468021	66468021	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0058865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	179	307	0	ENST00000273854.3:c.248G>T	p.Trp83Leu	p.W83L	ENST00000273854	NM_004439.5	83	tGg/tTg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163765	32163765	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	101	463	0	ENST00000375023.3:c.5461G>C	p.Gly1821Arg	p.G1821R	ENST00000375023	NM_004557.3	1821	Ggg/Cgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152027780	152027780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	128	410	0	ENST00000262189.6:c.295G>A	p.Asp99Asn	p.D99N	ENST00000262189	NM_170606.2	99	Gat/Aat																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139418400	139418400	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	272	499	0	ENST00000277541.6:c.172C>T	p.Gln58Ter	p.Q58*	ENST00000277541	NM_017617.3	58	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0059210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	422	590	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158617518	158617518	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs984482376		P-0059210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	333	496	0	ENST00000263640.3:c.1138C>T	p.Arg380Cys	p.R380C	ENST00000263640	NM_001105.4	380	Cgc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827927	40827927	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs536150112		P-0059210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	347	507	2	ENST00000373198.4:c.2501G>A	p.Arg834His	p.R834H	ENST00000373198	NM_133170.3	834	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	464	312	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117396	115117415	+	frameshift_variant	Frame_Shift_Del	DEL	TGTCATTGGCTCTTACAATG	TGTCATTGGCTCTTACAATG	-			P-0059210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	284	502	0	ENST00000257566.3:c.759_778del	p.Ile254LeufsTer6	p.I254Lfs*6	ENST00000257566	NM_016569.3	253	caCATTGTAAGAGCCAATGACAtc/catc																																																																															
KLF5	688	MSKCC	GRCh37	13	73636209	73636210	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0060067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			415	100	552	0	ENST00000377687.4:c.473dup	p.Thr159AsnfsTer16	p.T159Nfs*16	ENST00000377687	NM_001730.3	158	gta/gTta																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572608	64572609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0060077-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			680	200	858	0	ENST00000337652.1:c.1262dup	p.Tyr422LeufsTer32	p.Y422Lfs*32	ENST00000337652	NM_130803.2	421	ttc/ttTc																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732481	74732481	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060077-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			923	164	683	0	ENST00000359995.5:c.428G>C	p.Arg143Pro	p.R143P	ENST00000359995	NM_001195427.1	143	cGc/cCc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518250	8518250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	34	425	0	ENST00000356435.5:c.1141G>A	p.Ala381Thr	p.A381T	ENST00000356435		381	Gct/Act																																																																															
GAB2	9846	MSKCC	GRCh37	11	77933154	77933154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	43	417	0	ENST00000361507.4:c.1655C>T	p.Ala552Val	p.A552V	ENST00000361507	NM_080491.2	552	gCc/gTc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998576	100998576	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1274438915		P-0060133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	52	559	0	ENST00000325455.5:c.1226C>A	p.Ala409Asp	p.A409D	ENST00000325455	NM_001202474.3	409	gCc/gAc																																																																															
MET	4233	MSKCC	GRCh37	7	116411880	116411898	+	splice_region_variant,intron_variant	Splice_Region	DEL	TCTTTCTTTCTCTCTGTTT	TCTTTCTTTCTCTCTGTTT	-			P-0060133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	147	602	0	ENST00000397752.3:c.2888-22_2888-4del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
AR	367	MSKCC	GRCh37	X	66766180	66766180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	99	595	0	ENST00000374690.3:c.1192G>A	p.Ala398Thr	p.A398T	ENST00000374690	NM_000044.3	398	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0060304-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	147	509	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0060304-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	116	488	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928225	178928225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060304-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	96	342	0	ENST00000263967.3:c.1411C>G	p.Pro471Ala	p.P471A	ENST00000263967	NM_006218.2	471	Cca/Gca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152027747	152027747	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0060304-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	91	428	0	ENST00000262189.6:c.328C>T	p.Arg110Ter	p.R110*	ENST00000262189	NM_170606.2	110	Cga/Tga																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907091	101907091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060304-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	85	355	0	ENST00000374994.4:c.1051G>C	p.Asp351His	p.D351H	ENST00000374994	NM_004612.2	351	Gac/Cac																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99152248	99152248	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060304-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	79	341	0	ENST00000074304.5:c.327C>G	p.Ile109Met	p.I109M	ENST00000074304	NM_001134224.1	109	atC/atG																																																																															
PMS1	5378	MSKCC	GRCh37	2	190718687	190718687	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060304-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	153	277	0	ENST00000441310.2:c.845T>G	p.Leu282Arg	p.L282R	ENST00000441310	NM_000534.4	282	cTg/cGg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287389	33287389	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs750390792		P-0060304-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			743	103	575	0	ENST00000374542.5:c.1708G>C	p.Glu570Gln	p.E570Q	ENST00000374542	NM_001141970.1	570	Gag/Cag																																																																															
LYN	4067	MSKCC	GRCh37	8	56882326	56882326	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060304-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	99	461	0	ENST00000519728.1:c.1024C>G	p.Pro342Ala	p.P342A	ENST00000519728	NM_002350.3	342	Cca/Gca																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78422338	78422338	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1244295456		P-0060411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	372	647	3	ENST00000370768.2:c.1624G>A	p.Ala542Thr	p.A542T	ENST00000370768	NM_003902.3	542	Gct/Act																																																																															
RET	5979	MSKCC	GRCh37	10	43597849	43597849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			998	450	953	3	ENST00000355710.3:c.397C>T	p.Arg133Cys	p.R133C	ENST00000355710	NM_020975.4	133	Cgt/Tgt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23614908	23614908	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs180177137		P-0060411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			762	252	609	4	ENST00000261584.4:c.3433G>A	p.Gly1145Ser	p.G1145S	ENST00000261584	NM_024675.3	1145	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0060411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	527	900	8	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
BARD1	580	MSKCC	GRCh37	2	215674142	215674164	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCAGCGCAGCAGCTTCTCCAG	GAGCAGCGCAGCAGCTTCTCCAG	-			P-0060411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	290	597	3	ENST00000260947.4:c.130_152del	p.Leu44AlafsTer4	p.L44Afs*4	ENST00000260947	NM_000465.2	44	CTGGAGAAGCTGCTGCGCTGCTCg/g																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0060411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	111	563	8	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																															
ATRX	546	MSKCC	GRCh37	X	76845375	76845375	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0060411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	61	282	0	ENST00000373344.5:c.6146T>G	p.Leu2049Trp	p.L2049W	ENST00000373344	NM_000489.3	2049	tTg/tGg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197875	123197875	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776905490		P-0060411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	39	223	1	ENST00000218089.9:c.1999C>T	p.Arg667Trp	p.R667W	ENST00000218089	NM_001042749.1	667	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579361	7579361	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1064796722		P-0017761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	301	1043	0	ENST00000269305.4:c.326T>C	p.Phe109Ser	p.F109S	ENST00000269305	NM_001126112.2	109	tTc/tCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0038062-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			186	158	592	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038062-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			316	477	914	2	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0038062-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			151	432	503	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120842	115120843	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0038062-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	369	654	0	ENST00000257566.3:c.163_164del	p.Ser55AlafsTer55	p.S55Afs*55	ENST00000257566	NM_016569.3	55	TCg/g																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803501	32803501	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs142794316		P-0038062-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1422	101	885	3	ENST00000374899.4:c.658C>T	p.Arg220Ter	p.R220*	ENST00000374899	NM_018833.2	220	Cga/Tga																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821287	32821287	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038062-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	287	949	0	ENST00000354258.4:c.307A>G	p.Ile103Val	p.I103V	ENST00000354258	NM_000593.5	103	Ata/Gta																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356195	66356195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	149	403	0	ENST00000273854.3:c.1302C>A	p.His434Gln	p.H434Q	ENST00000273854	NM_004439.5	434	caC/caA																																																																															
SDHA	6389	MSKCC	GRCh37	5	233677	233678	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0038228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	85	275	1	ENST00000264932.6:c.981_982delinsAA	p.Met327_Glu328delinsIleLys	p.M327_E328delinsIK	ENST00000264932	NM_004168.2	327	atGGag/atAAag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55225377	55225377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	100	360	1	ENST00000275493.2:c.1229G>T	p.Trp410Leu	p.W410L	ENST00000275493	NM_005228.3	410	tGg/tTg																																																																															
MET	4233	MSKCC	GRCh37	7	116411874	116411892	+	intron_variant	Intron	DEL	ACAAGCTCTTTCTTTCTCT	ACAAGCTCTTTCTTTCTCT	-			P-0038228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	638	680	0	ENST00000397752.3:c.2888-29_2888-11del		p.*963*	ENST00000397752	NM_000245.2																																																																																	
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0039739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	47	250	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	70	186	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748595	40748595	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750813623		P-0039739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	122	446	0	ENST00000373198.4:c.2921G>A	p.Arg974Gln	p.R974Q	ENST00000373198	NM_133170.3	974	cGg/cAg																																																																															
ATM	472	MSKCC	GRCh37	11	108205709	108205709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	65	185	0	ENST00000278616.4:c.8024G>A	p.Gly2675Glu	p.G2675E	ENST00000278616	NM_000051.3	2675	gGa/gAa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117878922	117878922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	134	317	0	ENST00000297338.2:c.47A>T	p.Lys16Ile	p.K16I	ENST00000297338	NM_006265.2	16	aAa/aTa																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	63	222	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519971		P-0041185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	97	442	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0044043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	108	246	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645412	67645412	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	158	313	0	ENST00000264010.4:c.677A>G	p.Tyr226Cys	p.Y226C	ENST00000264010	NM_006565.3	226	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912664		P-0044043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	218	493	0	ENST00000269305.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000269305	NM_001126112.2	337	cGc/cAc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061312	38061312	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	722	488	0	ENST00000250448.2:c.677A>T	p.Asp226Val	p.D226V	ENST00000250448	NM_004496.3	226	gAc/gTc																																																																															
ATM	472	MSKCC	GRCh37	11	108143570	108143570	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0044043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	58	274	0	ENST00000278616.4:c.3275C>G	p.Ser1092Ter	p.S1092*	ENST00000278616	NM_000051.3	1092	tCa/tGa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225612	2225612	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	238	490	1	ENST00000326181.6:c.1615C>T	p.Gln539Ter	p.Q539*	ENST00000326181	NM_032271.2	539	Cag/Tag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177588	56177622	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGTTTGATGGCTATTGCAGATGAGGTGGAAATT	GCCGTTTGATGGCTATTGCAGATGAGGTGGAAATT	-			P-0044043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	131	283	0	ENST00000399503.3:c.2565_2599del	p.Leu856SerfsTer36	p.L856Sfs*36	ENST00000399503	NM_005921.1	854	cGCCGTTTGATGGCTATTGCAGATGAGGTGGAAATT/c																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239756	53239756	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0044043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	200	416	0	ENST00000375401.3:c.1586G>A	p.Gly529Asp	p.G529D	ENST00000375401	NM_004187.3	529	gGt/gAt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18274071	18274088	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGGACCAGATTGTCAAGG	AGGACCAGATTGTCAAGG	-			P-0044193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	155	558	0	ENST00000222254.8:c.1294_1311del		p.X432_splice	ENST00000222254	NM_005027.3	432																																																																																
ERF	2077	MSKCC	GRCh37	19	42753714	42753714	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1155	102	914	0	ENST00000222329.4:c.550G>C	p.Gly184Arg	p.G184R	ENST00000222329	NM_006494.2	184	Ggc/Cgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739070	40739071	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0044193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	66	685	1	ENST00000373198.4:c.3213_3214delinsAA	p.Asp1071_His1072delinsGluAsn	p.D1071_H1072delinsEN	ENST00000373198	NM_133170.3	1071	gaCCac/gaAAac																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485860	57485860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	61	409	0	ENST00000371085.3:c.1161C>A	p.His387Gln	p.H387Q	ENST00000371085	NM_000516.4	387	caC/caA																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194704	29194704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	112	957	0	ENST00000240100.2:c.1024G>A	p.Glu342Lys	p.E342K	ENST00000240100	NM_001394.6	342	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0044708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			456	325	564	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44941858	44941858	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0044708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			355	40	205	0	ENST00000377967.4:c.3182C>G	p.Ser1061Ter	p.S1061*	ENST00000377967	NM_021140.2	1061	tCa/tGa																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643248	38643248	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			396	54	400	0	ENST00000299084.4:c.718C>G	p.Gln240Glu	p.Q240E	ENST00000299084	NM_152594.2	240	Caa/Gaa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47155411	47155412	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			621	174	438	0	ENST00000409792.3:c.4669dup	p.Thr1557AsnfsTer31	p.T1557Nfs*31	ENST00000409792	NM_014159.6	1557	aca/aAca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0045582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	32	299	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0045582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	19	299	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575194	48575194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	10	247	0	ENST00000342988.3:c.388C>T	p.Pro130Ser	p.P130S	ENST00000342988	NM_005359.5	130	Cca/Tca																																																																															
CIC	23152	MSKCC	GRCh37	19	42794917	42794917	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199751904		P-0045582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	37	593	0	ENST00000575354.2:c.1997G>A	p.Arg666His	p.R666H	ENST00000575354	NM_015125.3	666	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0045582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	54	505	0	ENST00000269305.4:c.559+2T>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134968251	134968251	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373797543		P-0045690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	99	646	0	ENST00000398015.3:c.2764G>A	p.Ala922Thr	p.A922T	ENST00000398015	NM_004441.4	922	Gcc/Acc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0046018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	171	348	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0046018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	356	633	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953258	81953258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776768909		P-0046018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	150	285	0	ENST00000359376.3:c.2224C>T	p.Arg742Cys	p.R742C	ENST00000359376	NM_002661.3	742	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604704	48604704	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	214	354	0	ENST00000342988.3:c.1526G>A	p.Trp509Ter	p.W509*	ENST00000342988	NM_005359.5	509	tGg/tAg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28610073	28610073	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0046018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	274	400	0	ENST00000241453.7:c.1417A>G	p.Asn473Asp	p.N473D	ENST00000241453	NM_004119.2	473	Aac/Gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	242	438	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0046544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	156	281	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089721	27089721	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0046544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	129	413	1	ENST00000324856.7:c.2677A>T	p.Lys893Ter	p.K893*	ENST00000324856	NM_006015.4	893	Aaa/Taa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243777011	243777011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	33	250	0	ENST00000263826.5:c.658C>T	p.Arg220Cys	p.R220C	ENST00000263826	NM_005465.4	220	Cgt/Tgt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912200	114912200	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0046544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	172	313	0	ENST00000543371.1:c.1269+1G>T		p.X423_splice	ENST00000543371	NM_001198531.1	423																																																																																
ERCC5	2073	MSKCC	GRCh37	13	103528080	103528080	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	37	258	1	ENST00000355739.4:c.3388C>T	p.Gln1130Ter	p.Q1130*	ENST00000355739	NM_000123.3	1130	Cag/Tag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181782	56181782	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	80	172	0	ENST00000399503.3:c.4006A>C	p.Ser1336Arg	p.S1336R	ENST00000399503	NM_005921.1	1336	Agt/Cgt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8436653	8436653	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	38	304	0	ENST00000356435.5:c.4025T>A	p.Leu1342His	p.L1342H	ENST00000356435		1342	cTt/cAt																																																																															
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	126	455	1	ENST00000418115.1:c.50G>T	p.Gly17Val	p.G17V	ENST00000418115	NM_001664.2	17	gGa/gTa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15284990	15284990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	106	764	2	ENST00000263388.2:c.4625C>T	p.Ser1542Leu	p.S1542L	ENST00000263388	NM_000435.2	1542	tCg/tTg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061195	38061195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	114	365	0	ENST00000250448.2:c.794G>A	p.Arg265His	p.R265H	ENST00000250448	NM_004496.3	265	cGc/cAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68846082	68846083	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	109	488	0	ENST00000261769.5:c.1055dup	p.Glu353Ter	p.E353*	ENST00000261769	NM_004360.3	351	-/G																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	344	293	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ATM	472	MSKCC	GRCh37	11	108196879	108196880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs773570504		P-0046861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	139	265	0	ENST00000278616.4:c.6908dup	p.Glu2304GlyfsTer69	p.E2304Gfs*69	ENST00000278616	NM_000051.3	2301	gca/gcAa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038858	12038858	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0046861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	214	200	0	ENST00000396373.4:c.1153-2A>G		p.X385_splice	ENST00000396373	NM_001987.4	385																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15291016	15291016	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	195	671	0	ENST00000263388.2:c.3194A>G	p.Asp1065Gly	p.D1065G	ENST00000263388	NM_000435.2	1065	gAc/gGc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218660	36218660	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776889319		P-0046861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	199	623	0	ENST00000222270.7:c.4364G>A	p.Arg1455His	p.R1455H	ENST00000222270	NM_014727.1	1455	cGc/cAc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185167792	185167792	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	136	347	0	ENST00000265026.3:c.1115T>A	p.Leu372His	p.L372H	ENST00000265026	NM_004721.4	372	cTt/cAt																																																																															
IRF4	3662	MSKCC	GRCh37	6	401585	401585	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	119	392	0	ENST00000380956.4:c.907A>C	p.Asn303His	p.N303H	ENST00000380956	NM_001195286.1	303	Aac/Cac																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798478	32798478	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	154	538	0	ENST00000374899.4:c.1378G>C	p.Ala460Pro	p.A460P	ENST00000374899	NM_018833.2	460	Gcc/Ccc																																																																															
ATM	472	MSKCC	GRCh37	11	108128263	108128264	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	C			P-0046861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	111	259	0	ENST00000278616.4:c.2306_2307delinsC	p.Glu769AlafsTer8	p.E769Afs*8	ENST00000278616	NM_000051.3	769	gAG/gC																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933052	39933057	+	frameshift_variant	Frame_Shift_Del	DEL	GGACTT	GGACTT	A			P-0046861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	182	585	0	ENST00000378444.4:c.1542_1547delinsT	p.Ser515Ter	p.S515*	ENST00000378444	NM_001123385.1	514	ccAAGTCCt/ccTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577123	7577123	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs876660333		P-0047347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	425	675	0	ENST00000269305.4:c.815T>A	p.Val272Glu	p.V272E	ENST00000269305	NM_001126112.2	272	gTg/gAg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103528237	103528237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	39	258	0	ENST00000355739.4:c.3545G>A	p.Arg1182Lys	p.R1182K	ENST00000355739	NM_000123.3	1182	aGa/aAa																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871765	35871772	+	frameshift_variant	Frame_Shift_Del	DEL	GGTAACTC	GGTAACTC	TTCTGA			P-0047347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	100	640	1	ENST00000216797.5:c.734_741delinsTCAGAA	p.Arg245IlefsTer39	p.R245Ifs*39	ENST00000216797	NM_020529.2	245	aGAGTTACC/aTCAGAA																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	26	279	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																															
APC	324	MSKCC	GRCh37	5	112116601	112116601	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs863225370		P-0047490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	32	255	0	ENST00000257430.4:c.645+1G>A		p.X215_splice	ENST00000257430	NM_000038.5	215																																																																																
SPEN	23013	MSKCC	GRCh37	1	16261773	16261773	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	34	518	0	ENST00000375759.3:c.9038T>C	p.Val3013Ala	p.V3013A	ENST00000375759	NM_015001.2	3013	gTc/gCc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118865	70118865	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	132	585	0	ENST00000245479.2:c.437T>G	p.Leu146Arg	p.L146R	ENST00000245479	NM_000346.3	146	cTg/cGg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212483982	212483982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	21	367	0	ENST00000342788.4:c.2221G>T	p.Gly741Ter	p.G741*	ENST00000342788	NM_005235.2	741	Gga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739028	40739028	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757894088		P-0047490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	35	621	0	ENST00000373198.4:c.3256C>T	p.Arg1086Cys	p.R1086C	ENST00000373198	NM_133170.3	1086	Cgc/Tgc																																																																															
KDR	3791	MSKCC	GRCh37	4	55946234	55946234	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	43	379	0	ENST00000263923.4:c.3945C>A	p.Asp1315Glu	p.D1315E	ENST00000263923	NM_002253.2	1315	gaC/gaA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0047803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	133	515	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0047803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	21	730	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29527570	29527571	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	75	390	0	ENST00000358273.4:c.1020dup	p.Val341CysfsTer12	p.V341Cfs*12	ENST00000358273	NM_001042492.2	340	tct/tcTt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58678058	58678058	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	113	429	0	ENST00000305921.3:c.283C>G	p.Arg95Gly	p.R95G	ENST00000305921	NM_003620.3	95	Cgt/Ggt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	85	257	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106915	27106915	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	181	592	0	ENST00000324856.7:c.6526C>T	p.Gln2176Ter	p.Q2176*	ENST00000324856	NM_006015.4	2176	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115726	8115726	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0048058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	160	282	0	ENST00000346208.3:c.1072A>T	p.Lys358Ter	p.K358*	ENST00000346208		358	Aag/Tag																																																																															
CBFB	865	MSKCC	GRCh37	16	67063390	67063390	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0048058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	250	323	0	ENST00000412916.2:c.78+2T>A		p.X26_splice	ENST00000412916		26																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151859435	151859436	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	200	384	1	ENST00000262189.6:c.11226dup	p.Lys3743Ter	p.K3743*	ENST00000262189	NM_170606.2	3742	-/T																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8517896	8517896	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	59	245	0	ENST00000356435.5:c.1495G>T	p.Gly499Ter	p.G499*	ENST00000356435		499	Gga/Tga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164124	47164124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	17	258	0	ENST00000409792.3:c.2002C>T	p.Pro668Ser	p.P668S	ENST00000409792	NM_014159.6	668	Ccc/Tcc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087894	27087901	+	frameshift_variant	Frame_Shift_Del	DEL	GCCACCCA	GCCACCCA	-			P-0048264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	41	589	0	ENST00000324856.7:c.2182_2189del	p.Pro728TrpfsTer86	p.P728Wfs*86	ENST00000324856	NM_006015.4	727	cgGCCACCCAgt/cggt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15943768	15943768	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	28	277	0	ENST00000268712.3:c.6720del	p.Val2241LeufsTer52	p.V2241Lfs*52	ENST00000268712	NM_006311.3	2240	gcA/gc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589597	67589599	+	inframe_deletion	In_Frame_Del	DEL	ACT	ACT	-			P-0048264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	15	205	0	ENST00000274335.5:c.1360_1362del	p.Thr454del	p.T454del	ENST00000274335		454	ACT/-																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739859	145739859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	47	1042	1	ENST00000428558.2:c.1671G>A	p.Met557Ile	p.M557I	ENST00000428558	NM_004260.3	557	atG/atA																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266512	198266512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	81	206	0	ENST00000335508.6:c.2324G>A	p.Arg775Gln	p.R775Q	ENST00000335508	NM_012433.2	775	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0048864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	60	470	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47129622	47129623	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	133	210	0	ENST00000409792.3:c.5257dup	p.Thr1753AsnfsTer36	p.T1753Nfs*36	ENST00000409792	NM_014159.6	1753	acc/aAcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	38	366	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0048933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	343	280	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0048933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	256	618	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672317	86672317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	15	349	0	ENST00000274376.6:c.2119C>T	p.Arg707Cys	p.R707C	ENST00000274376	NM_002890.2	707	Cgt/Tgt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678458	88678458	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747624231		P-0048933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	118	647	0	ENST00000360948.2:c.1078G>A	p.Glu360Lys	p.E360K	ENST00000360948	NM_001012338.2	360	Gag/Aag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298023	15298023	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745672629		P-0048933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	390	856	0	ENST00000263388.2:c.1733G>A	p.Arg578His	p.R578H	ENST00000263388	NM_000435.2	578	cGc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133233987	133233987	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761355093		P-0048933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	240	594	0	ENST00000320574.5:c.3407G>A	p.Arg1136Gln	p.R1136Q	ENST00000320574	NM_006231.2	1136	cGg/cAg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457247	67457247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	324	703	2	ENST00000327367.4:c.221G>A	p.Arg74Gln	p.R74Q	ENST00000327367	NM_005902.3	74	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575161	48575161	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	16	236	0	ENST00000342988.3:c.357del	p.Phe119LeufsTer3	p.F119Lfs*3	ENST00000342988	NM_005359.5	119	Ttt/tt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880972	134880972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	144	586	0	ENST00000398015.3:c.1535C>A	p.Ala512Asp	p.A512D	ENST00000398015	NM_004441.4	512	gCt/gAt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0048986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	223	558	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966468	25966468	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	167	651	0	ENST00000435504.4:c.2738C>A	p.Ser913Ter	p.S913*	ENST00000435504		913	tCa/tAa																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154350	2154350	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1268163024		P-0048994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	78	739	2	ENST00000434045.2:c.578G>A	p.Arg193His	p.R193H	ENST00000434045	NM_001127598.1	193	cGc/cAc																																																																															
INHA	3623	MSKCC	GRCh37	2	220437158	220437158	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs75409408		P-0048994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	101	776	0	ENST00000243786.2:c.62G>A	p.Gly21Glu	p.G21E	ENST00000243786	NM_002191.3	21	gGg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0049146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	85	348	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0049146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	87	548	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0049146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	45	313	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013741	12013741	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	45	271	0	ENST00000353533.5:c.683G>A	p.Arg228Lys	p.R228K	ENST00000353533	NM_003010.3	228	aGa/aAa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828134	243828134	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	80	369	0	ENST00000263826.5:c.224G>C	p.Arg75Thr	p.R75T	ENST00000263826	NM_005465.4	75	aGa/aCa																																																																															
CBL	867	MSKCC	GRCh37	11	119156182	119156182	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs376094293		P-0049146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	95	445	0	ENST00000264033.4:c.1847A>C	p.Asn616Thr	p.N616T	ENST00000264033	NM_005188.3	616	aAc/aCc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445197	49445197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	102	802	0	ENST00000301067.7:c.2269G>A	p.Glu757Lys	p.E757K	ENST00000301067	NM_003482.3	757	Gag/Aag																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473627	67473627	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	107	554	0	ENST00000327367.4:c.707C>G	p.Ser236Cys	p.S236C	ENST00000327367	NM_005902.3	236	tCc/tGc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117862889	117862889	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	93	395	0	ENST00000297338.2:c.1588G>C	p.Glu530Gln	p.E530Q	ENST00000297338	NM_006265.2	530	Gag/Cag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0049192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	88	332	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0049192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	158	549	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0049192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	64	267	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0049192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	102	828	1	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26828881	26828881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	105	385	0	ENST00000381527.3:c.103G>A	p.Val35Ile	p.V35I	ENST00000381527	NM_001260.1	35	Gtc/Atc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980413	1980413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	107	785	1	ENST00000382895.3:c.3875C>T	p.Ser1292Leu	p.S1292L	ENST00000382895	NM_133330.2	1292	tCg/tTg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371732	55371732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	100	519	0	ENST00000297316.4:c.422G>A	p.Arg141Gln	p.R141Q	ENST00000297316	NM_022454.3	141	cGg/cAg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0049203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	228	599	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225346633	225346633	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	55	252	0	ENST00000264414.4:c.2005C>G	p.Leu669Val	p.L669V	ENST00000264414	NM_003590.4	669	Cta/Gta																																																																															
CBFB	865	MSKCC	GRCh37	16	67100696	67100697	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0049203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	64	383	2	ENST00000412916.2:c.394_395delinsTT	p.Ala132Phe	p.A132F	ENST00000412916		132	GCc/TTc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004544	16004627	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTTATGGAACGAGCCTCACCTCTGCCTCTCTGGCTCTCCATCCACATCCTCATCAGCGCTGCACGTGGCACTGGAATCATTGT	ACTTATGGAACGAGCCTCACCTCTGCCTCTCTGGCTCTCCATCCACATCCTCATCAGCGCTGCACGTGGCACTGGAATCATTGT	GATTGC			P-0049203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	58	413	4	ENST00000268712.3:c.2627_2690+20delinsGCAATC		p.X876_splice	ENST00000268712	NM_006311.3	876																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67589663	67589663	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587777709		P-0049515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	99	198	2	ENST00000274335.5:c.1425+1G>A		p.X475_splice	ENST00000274335		475																																																																																
RECQL	5965	MSKCC	GRCh37	12	21628716	21628716	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755679996		P-0049515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	121	321	4	ENST00000421138.2:c.992C>T	p.Thr331Met	p.T331M	ENST00000421138		331	aCg/aTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202137439	202137440	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0049515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	162	307	2	ENST00000358485.4:c.669_670del	p.Ala224ProfsTer14	p.A224Pfs*14	ENST00000358485	NM_001080125.1	223	TGt/t																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940778	49940778	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1273800589		P-0049515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	260	538	0	ENST00000296474.3:c.265C>T	p.Gln89Ter	p.Q89*	ENST00000296474	NM_002447.2	89	Cag/Tag																																																																															
TERT	7015	MSKCC	GRCh37	5	1293868	1293868	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	278	690	1	ENST00000310581.5:c.1133G>C	p.Arg378Thr	p.R378T	ENST00000310581	NM_198253.2	378	aGg/aCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0049749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	327	239	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577128	7577128	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519987		P-0049749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	154	609	1	ENST00000269305.4:c.810T>G	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	ttT/ttG																																																																															
TET1	80312	MSKCC	GRCh37	10	70404813	70404813	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	29	366	0	ENST00000373644.4:c.2327A>C	p.Lys776Thr	p.K776T	ENST00000373644	NM_030625.2	776	aAa/aCa																																																																															
MET	4233	MSKCC	GRCh37	7	116411949	116412050	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCATTTGGATAGGCTTGTAAGTGCCCGAAGTGTAAGCCCAACTACAGAAATGGTTTCAAATGAATCTGTAGACTACCGAGCTACTTTTCCAGAAGGTATATT	TCATTTGGATAGGCTTGTAAGTGCCCGAAGTGTAAGCCCAACTACAGAAATGGTTTCAAATGAATCTGTAGACTACCGAGCTACTTTTCCAGAAGGTATATT	-			P-0050024-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			664	277	581	0	ENST00000397752.3:c.2937_3028+10del		p.X979_splice	ENST00000397752	NM_000245.2	979																																																																																
TET1	80312	MSKCC	GRCh37	10	70426974	70426974	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	147	307	0	ENST00000373644.4:c.4634A>G	p.Asn1545Ser	p.N1545S	ENST00000373644	NM_030625.2	1545	aAt/aGt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772950	135772951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs118203724		P-0050072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	87	306	0	ENST00000298552.3:c.2672dup	p.Asn891LysfsTer13	p.N891Kfs*13	ENST00000298552	NM_001162426.1	891	aac/aaAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1202793339		P-0050072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	131	494	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
HGF	3082	MSKCC	GRCh37	7	81334828	81334828	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs769585774		P-0050072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	110	329	0	ENST00000222390.5:c.1888C>T	p.Arg630Ter	p.R630*	ENST00000222390	NM_000601.4	630	Cga/Tga																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632419	3632419	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs757727147		P-0050072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	100	629	0	ENST00000294008.3:c.5429C>G	p.Thr1810Ser	p.T1810S	ENST00000294008	NM_032444.2	1810	aCt/aGt																																																																															
SDHC	6391	MSKCC	GRCh37	1	161284200	161284200	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs781337432		P-0050072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	72	390	0	ENST00000367975.2:c.5C>G	p.Ala2Gly	p.A2G	ENST00000367975	NM_003001.3	2	gCt/gGt																																																																															
MGA	23269	MSKCC	GRCh37	15	42028780	42028780	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	79	434	0	ENST00000219905.7:c.4318G>C	p.Val1440Leu	p.V1440L	ENST00000219905	NM_001164273.1	1440	Gtg/Ctg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16022796	16022796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	105	300	0	ENST00000268712.3:c.1856C>T	p.Ser619Phe	p.S619F	ENST00000268712	NM_006311.3	619	tCt/tTt																																																																															
CIC	23152	MSKCC	GRCh37	19	42790949	42790949	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	61	505	0	ENST00000575354.2:c.94G>C	p.Val32Leu	p.V32L	ENST00000575354	NM_015125.3	32	Gtg/Ctg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38153387	38153387	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1374124695		P-0050072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	262	435	0	ENST00000317025.8:c.2842A>G	p.Asn948Asp	p.N948D	ENST00000317025	NM_023034.1	948	Aat/Gat																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587776934		P-0050251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	50	530	0	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg																																																																															
EP300	2033	MSKCC	GRCh37	22	41513377	41513377	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1392142896		P-0050251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	67	543	0	ENST00000263253.7:c.281A>G	p.Asn94Ser	p.N94S	ENST00000263253	NM_001429.3	94	aAt/aGt																																																																															
MET	4233	MSKCC	GRCh37	7	116411858	116411894	+	intron_variant	Intron	DEL	ATGATAGCCGTCTTTAACAAGCTCTTTCTTTCTCTCT	ATGATAGCCGTCTTTAACAAGCTCTTTCTTTCTCTCT	-			P-0050251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	168	704	0	ENST00000397752.3:c.2888-45_2888-9del		p.*963*	ENST00000397752	NM_000245.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0050277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	345	599	29	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0050277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	186	424	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
NF1	4763	MSKCC	GRCh37	17	29562657	29562660	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-			P-0050277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	213	403	0	ENST00000358273.4:c.3739_3742del	p.Phe1247IlefsTer18	p.F1247Ifs*18	ENST00000358273	NM_001042492.2	1246	cTGTTt/ct																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911639	114911639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	111	376	0	ENST00000543371.1:c.1157G>A	p.Arg386Gln	p.R386Q	ENST00000543371	NM_001198531.1	386	cGg/cAg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436695	110436695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	61	852	0	ENST00000375856.3:c.1706G>A	p.Arg569Gln	p.R569Q	ENST00000375856	NM_003749.2	569	cGa/cAa																																																																															
RARA	5914	MSKCC	GRCh37	17	38510601	38510603	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0050277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	329	680	0	ENST00000254066.5:c.857_859del	p.Phe286del	p.F286del	ENST00000254066	NM_000964.3	285	acCTTc/acc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21619918	21619918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	106	553	0	ENST00000382592.4:c.248C>T	p.Ser83Phe	p.S83F	ENST00000382592	NM_014572.2	83	tCc/tTc																																																																															
FH	2271	MSKCC	GRCh37	1	241682919	241682919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs942065027		P-0050277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	157	568	0	ENST00000366560.3:c.104C>T	p.Ser35Leu	p.S35L	ENST00000366560	NM_000143.3	35	tCg/tTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70450931	70450931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	124	431	0	ENST00000373644.4:c.5771C>T	p.Ser1924Phe	p.S1924F	ENST00000373644	NM_030625.2	1924	tCt/tTt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233271	46233271	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	106	303	0	ENST00000334344.6:c.1490C>G	p.Ser497Cys	p.S497C	ENST00000334344	NM_152641.2	497	tCt/tGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432147	49432147	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	131	762	0	ENST00000301067.7:c.8992G>C	p.Asp2998His	p.D2998H	ENST00000301067	NM_003482.3	2998	Gat/Cat																																																																															
CBFB	865	MSKCC	GRCh37	16	67070567	67070568	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0050277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	122	198	0	ENST00000412916.2:c.192_193del	p.Leu66ProfsTer16	p.L66Pfs*16	ENST00000412916		64	cTG/c																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16068373	16068373	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	15	20	0	ENST00000268712.3:c.538G>C	p.Glu180Gln	p.E180Q	ENST00000268712	NM_006311.3	180	Gag/Cag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121151	11121151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	133	773	0	ENST00000344626.4:c.2218G>A	p.Glu740Lys	p.E740K	ENST00000344626	NM_003072.3	740	Gag/Aag																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950374	38950374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	79	335	0	ENST00000357387.3:c.3576G>C	p.Glu1192Asp	p.E1192D	ENST00000357387	NM_152756.3	1192	gaG/gaC																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56170911	56170911	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	26	309	0	ENST00000399503.3:c.1739G>C	p.Arg580Thr	p.R580T	ENST00000399503	NM_005921.1	580	aGa/aCa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56171004	56171004	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	30	337	0	ENST00000399503.3:c.1832G>C	p.Gly611Ala	p.G611A	ENST00000399503	NM_005921.1	611	gGa/gCa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56174888	56174889	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	192	419	0	ENST00000399503.3:c.2049dup	p.Val684CysfsTer13	p.V684Cfs*13	ENST00000399503	NM_005921.1	683	gtt/gTtt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522357	176522357	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs34158682		P-0050277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	178	682	1	ENST00000292408.4:c.1546G>T	p.Asp516Tyr	p.D516Y	ENST00000292408	NM_213647.1	516	Gac/Tac																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202444	138202444	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	151	655	0	ENST00000237289.4:c.2361G>C	p.Gln787His	p.Q787H	ENST00000237289	NM_001270507.1	787	caG/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876658483		P-0050356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	149	754	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0050356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	104	430	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs778405030		P-0050356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	93	323	0	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5219970	5219970	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116545788		P-0050356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	84	687	1	ENST00000357368.4:c.3745G>A	p.Val1249Met	p.V1249M	ENST00000357368	NM_002850.3	1249	Gtg/Atg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411447	63411447	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754938624		P-0050356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	69	749	1	ENST00000330258.3:c.1720C>T	p.Arg574Trp	p.R574W	ENST00000330258	NM_152424.3	574	Cgg/Tgg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288635	33288635	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138014437		P-0050356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	59	505	0	ENST00000374542.5:c.917G>A	p.Arg306Gln	p.R306Q	ENST00000374542	NM_001141970.1	306	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0050581-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			588	752	972	1	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610505	10610505	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050581-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			541	620	900	0	ENST00000171111.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000171111	NM_203500.1	69	Gag/Tag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66233137	66233137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050581-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			718	117	453	0	ENST00000273854.3:c.1862G>T	p.Cys621Phe	p.C621F	ENST00000273854	NM_004439.5	621	tGt/tTt																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123247576	123247576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050581-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			541	101	625	0	ENST00000358487.5:c.1915G>T	p.Val639Leu	p.V639L	ENST00000358487	NM_000141.4	639	Gtg/Ttg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199465	16199465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050581-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			483	76	463	1	ENST00000375759.3:c.238G>A	p.Glu80Lys	p.E80K	ENST00000375759	NM_015001.2	80	Gaa/Aaa																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154365	2154365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050581-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	169	1115	0	ENST00000434045.2:c.563C>A	p.Ala188Asp	p.A188D	ENST00000434045	NM_001127598.1	188	gCc/gAc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456396	32456396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050581-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			829	139	808	0	ENST00000332351.3:c.496G>T	p.Gly166Cys	p.G166C	ENST00000332351	NM_024426.4	166	Ggc/Tgc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492796	56492824	+	frameshift_variant	Frame_Shift_Del	DEL	ATAATAGCTTTCTGTTCTGCTGATCTTTC	ATAATAGCTTTCTGTTCTGCTGATCTTTC	-			P-0050581-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			960	113	659	0	ENST00000407977.2:c.115_143del	p.Glu39GlnfsTer26	p.E39Qfs*26	ENST00000407977		39	GAAAGATCAGCAGAACAGAAAGCTATTATc/c																																																																															
REL	5966	MSKCC	GRCh37	2	61128213	61128213	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050581-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			397	162	205	1	ENST00000295025.8:c.389T>A	p.Phe130Tyr	p.F130Y	ENST00000295025	NM_002908.2	130	tTc/tAc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193202164	193202164	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1223664442		P-0050964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	47	280	0	ENST00000367435.3:c.1196G>A	p.Arg399Gln	p.R399Q	ENST00000367435	NM_024529.4	399	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0051177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	213	975	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0051177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	59	506	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0051177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	39	318	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044541	47044541	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	173	525	0	ENST00000329236.7:c.1804C>T	p.Arg602Ter	p.R602*	ENST00000329236	NM_001204466.1	602	Cga/Tga																																																																															
PGR	5241	MSKCC	GRCh37	11	100909851	100909851	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	12	314	0	ENST00000325455.5:c.2798A>T	p.Lys933Met	p.K933M	ENST00000325455	NM_001202474.3	933	aAg/aTg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523073	25523073	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779208522		P-0051177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	198	937	2	ENST00000264709.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000264709	NM_175629.2	38	Cgc/Tgc																																																																															
PARP1	142	MSKCC	GRCh37	1	226561935	226561935	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	81	616	0	ENST00000366794.5:c.2062G>T	p.Glu688Ter	p.E688*	ENST00000366794	NM_001618.3	688	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0051180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	160	704	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519976		P-0051702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	229	918	0	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18656299	18656299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	71	478	0	ENST00000266497.5:c.2978C>T	p.Thr993Ile	p.T993I	ENST00000266497		993	aCa/aTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443517	49443517	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	48	620	0	ENST00000301067.7:c.3854A>T	p.Glu1285Val	p.E1285V	ENST00000301067	NM_003482.3	1285	gAg/gTg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2213976	2213976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	211	703	2	ENST00000326181.6:c.55C>T	p.Leu19Phe	p.L19F	ENST00000326181	NM_032271.2	19	Ctt/Ttt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285312	212285312	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	50	340	0	ENST00000342788.4:c.2989A>C	p.Ser997Arg	p.S997R	ENST00000342788	NM_005235.2	997	Agt/Cgt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71050197	71050197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	56	302	0	ENST00000318789.4:c.988G>A	p.Glu330Lys	p.E330K	ENST00000318789	NM_032682.5	330	Gag/Aag																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576352	67576357	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTAGAA	GTAGAA	-			P-0051702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	42	222	0	ENST00000274335.5:c.635-1_639del		p.X212_splice	ENST00000274335		212																																																																																
HIST1H3A	8350	MSKCC	GRCh37	6	26021004	26021004	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1268	205	633	0	ENST00000357647.3:c.287C>A	p.Ala96Glu	p.A96E	ENST00000357647	NM_003529.2	96	gCg/gAg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426063	47426063	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	224	850	0	ENST00000377045.4:c.583G>C	p.Glu195Gln	p.E195Q	ENST00000377045	NM_001654.4	195	Gag/Cag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	282	316	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0051778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	320	662	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683228	88683228	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876658515		P-0051778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	88	450	1	ENST00000372037.3:c.1438C>T	p.Arg480Trp	p.R480W	ENST00000372037	NM_004329.2	480	Cgg/Tgg																																																																															
ATRX	546	MSKCC	GRCh37	X	76829787	76829787	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057517948		P-0051778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	66	537	2	ENST00000373344.5:c.6254G>A	p.Arg2085His	p.R2085H	ENST00000373344	NM_000489.3	2085	cGt/cAt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12043158	12043158	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0051778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	43	233	0	ENST00000353533.5:c.1043T>G	p.Leu348Arg	p.L348R	ENST00000353533	NM_003010.3	348	cTt/cGt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600459	10600460	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0051778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	191	719	0	ENST00000171111.5:c.1394_1395dup	p.Ala466TrpfsTer35	p.A466Wfs*35	ENST00000171111	NM_203500.1	465	-/TG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0051973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	269	782	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31025023	31025023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	246	512	0	ENST00000375687.4:c.4508C>T	p.Ser1503Leu	p.S1503L	ENST00000375687	NM_015338.5	1503	tCg/tTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527811	103527811	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	127	460	1	ENST00000355739.4:c.3119C>A	p.Ala1040Asp	p.A1040D	ENST00000355739	NM_000123.3	1040	gCc/gAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350666	89350666	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0051973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1276	101	987	1	ENST00000301030.4:c.2284A>T	p.Lys762Ter	p.K762*	ENST00000301030	NM_001256183.1	762	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175222	112175223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0051973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	124	245	1	ENST00000257430.4:c.3933dup	p.Gly1312TrpfsTer3	p.G1312Wfs*3	ENST00000257430	NM_000038.5	1311	att/aTtt																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858086	152858086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	56	621	0	ENST00000406277.2:c.529C>T	p.His177Tyr	p.H177Y	ENST00000406277	NM_152274.4	177	Cat/Tat																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115712	8115752	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGA	CCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGA	-			P-0052057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	52	261	0	ENST00000346208.3:c.1058_1098del	p.Pro353GlnfsTer4	p.P353Qfs*4	ENST00000346208		353	cCCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGA/c																																																																															
CBFB	865	MSKCC	GRCh37	16	67100664	67100664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	112	394	0	ENST00000412916.2:c.362G>T	p.Gly121Val	p.G121V	ENST00000412916		121	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0052146-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			877	19	962	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
CBL	867	MSKCC	GRCh37	11	119155692	119155692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052146-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			691	44	613	1	ENST00000264033.4:c.1445C>T	p.Pro482Leu	p.P482L	ENST00000264033	NM_005188.3	482	cCt/cTt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0052326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	478	580	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258889	16258889	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	307	658	4	ENST00000375759.3:c.6158del	p.Asn2053ThrfsTer11	p.N2053Tfs*11	ENST00000375759	NM_015001.2	2052	Aaa/aa																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169991111	169991111	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	203	325	0	ENST00000295797.4:c.629C>G	p.Ser210Cys	p.S210C	ENST00000295797	NM_002740.5	210	tCt/tGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115907	8115910	+	frameshift_variant	Frame_Shift_Del	DEL	CGCC	CGCC	-			P-0052326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	246	566	0	ENST00000346208.3:c.1254_1257del	p.Pro419ArgfsTer55	p.P419Rfs*55	ENST00000346208		418	aCGCCc/ac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118372408	118372408	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	197	337	0	ENST00000534358.1:c.6344del	p.Asn2115ThrfsTer6	p.N2115Tfs*6	ENST00000534358	NM_005933.3	2114	cAa/ca																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62321526	62321526	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A			P-0052326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2008	374	886	1	ENST00000482936.1:c.2228G>A	p.Arg743Gln	p.R743Q	ENST00000482936		743	cGa/cAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630516	187630516	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376750393		P-0052326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	353	641	0	ENST00000441802.2:c.466G>A	p.Val156Ile	p.V156I	ENST00000441802	NM_005245.3	156	Gtt/Att																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873644	151873645	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0052326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	236	533	0	ENST00000262189.6:c.8893_8894del	p.Leu2965GlyfsTer2	p.L2965Gfs*2	ENST00000262189	NM_170606.2	2965	TTg/g																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607823	46607824	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0052905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	123	750	0	ENST00000263734.3:c.2016_2017del	p.Pro673ThrfsTer42	p.P673Tfs*42	ENST00000263734	NM_001430.4	671	gTC/g																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916942	178916944	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0052905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	78	376	0	ENST00000263967.3:c.330_332del	p.Lys111del	p.K111del	ENST00000263967	NM_006218.2	110	gAAAag/gag																																																																															
RAC1	5879	MSKCC	GRCh37	7	6439797	6439797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	100	580	0	ENST00000356142.4:c.323C>T	p.Ser108Leu	p.S108L	ENST00000356142	NM_018890.3	108	tCa/tTa																																																																															
EP300	2033	MSKCC	GRCh37	22	41566508	41566508	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1263559023		P-0053407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	102	467	0	ENST00000263253.7:c.4385G>A	p.Arg1462Gln	p.R1462Q	ENST00000263253	NM_001429.3	1462	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0053697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	35	373	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750827	57750827	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	48	392	0	ENST00000274289.3:c.1777A>G	p.Thr593Ala	p.T593A	ENST00000274289	NM_006622.3	593	Act/Gct																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0053924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	188	229	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0053924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	192	710	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519893		P-0053924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	206	691	0	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0053924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	239	208	1	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244196	5244196	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs919253826		P-0053924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	112	900	1	ENST00000357368.4:c.1286C>T	p.Ala429Val	p.A429V	ENST00000357368	NM_002850.3	429	gCg/gTg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468492	89468492	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	33	187	0	ENST00000336596.2:c.2026C>G	p.Gln676Glu	p.Q676E	ENST00000336596	NM_005233.5	676	Cag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0054065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	350	643	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	85	351	0	ENST00000342988.3:c.1067C>G	p.Pro356Arg	p.P356R	ENST00000342988	NM_005359.5	356	cCt/cGt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031954	10031954	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199528312		P-0054065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	105	577	1	ENST00000330684.3:c.869C>T	p.Ala290Val	p.A290V	ENST00000330684	NM_001134407.1	290	gCg/gTg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750528	57750528	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs768613514		P-0054065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	27	368	0	ENST00000274289.3:c.1940A>G	p.Asn647Ser	p.N647S	ENST00000274289	NM_006622.3	647	aAt/aGt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266070	41266287	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGC	AGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGC	-			P-0054065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	87	291	0	ENST00000349496.5:c.70_241+46del		p.X24_splice	ENST00000349496	NM_001904.3	24																																																																																
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0054770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	224	863	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0054770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	115	422	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115280094	115280094	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0054770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	171	573	0	ENST00000438362.2:c.538G>C	p.Gly180Arg	p.G180R	ENST00000438362	NM_001242891.1	180	Ggg/Cgg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943335	71943335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	175	956	0	ENST00000298229.2:c.1667G>T	p.Gly556Val	p.G556V	ENST00000298229	NM_001567.3	556	gGc/gTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118362642	118362642	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0054770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	89	406	0	ENST00000534358.1:c.5003A>T	p.Gln1668Leu	p.Q1668L	ENST00000534358	NM_005933.3	1668	cAg/cTg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485418	57485418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	97	353	0	ENST00000371085.3:c.1000G>A	p.Val334Met	p.V334M	ENST00000371085	NM_000516.4	334	Gtg/Atg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913324		P-0055365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	78	617	0	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0055365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	54	424	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0055365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	37	525	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372320	55372320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	90	664	0	ENST00000297316.4:c.1010C>T	p.Pro337Leu	p.P337L	ENST00000297316	NM_022454.3	337	cCg/cTg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0055365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	44	348	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67663317	67663317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	35	292	0	ENST00000264010.4:c.1718A>G	p.His573Arg	p.H573R	ENST00000264010	NM_006565.3	573	cAt/cGt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610501	10610501	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0055365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	73	627	0	ENST00000171111.5:c.209T>A	p.Leu70Gln	p.L70Q	ENST00000171111	NM_203500.1	70	cTg/cAg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64126759	64126759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	93	506	1	ENST00000334205.4:c.52G>A	p.Glu18Lys	p.E18K	ENST00000334205	NM_003942.2	18	Gaa/Aaa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779658	3779659	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0055365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	73	628	0	ENST00000262367.5:c.5388_5389dup	p.Lys1797ArgfsTer3	p.K1797Rfs*3	ENST00000262367	NM_004380.2	1797	aag/aGAag																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086192	16086192	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	41	374	0	ENST00000281043.3:c.1368G>C	p.Lys456Asn	p.K456N	ENST00000281043	NM_005378.4	456	aaG/aaC																																																																															
CENPA	1058	MSKCC	GRCh37	2	27009107	27009116	+	frameshift_variant	Frame_Shift_Del	DEL	AGGCGCAGCC	AGGCGCAGCC	-			P-0055365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	19	157	0	ENST00000335756.4:c.43_52del	p.Arg16AlafsTer15	p.R16Afs*15	ENST00000335756	NM_001809.3	15	AGGCGCAGCCcg/cg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665144	138665144	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	70	505	1	ENST00000330315.3:c.421G>T	p.Gly141Cys	p.G141C	ENST00000330315	NM_023067.3	141	Ggc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187531150	187531150	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	32	237	0	ENST00000441802.2:c.9873G>C	p.Glu3291Asp	p.E3291D	ENST00000441802	NM_005245.3	3291	gaG/gaC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877043	151877043	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	46	386	0	ENST00000262189.6:c.7318C>G	p.Pro2440Ala	p.P2440A	ENST00000262189	NM_170606.2	2440	Cct/Gct																																																																															
ATRX	546	MSKCC	GRCh37	X	76813110	76813110	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	32	307	0	ENST00000373344.5:c.6511A>G	p.Met2171Val	p.M2171V	ENST00000373344	NM_000489.3	2171	Atg/Gtg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458433	120458433	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	1080	466	0	ENST00000256646.2:c.6912del	p.Ile2304MetfsTer2	p.I2304Mfs*2	ENST00000256646	NM_024408.3	2304	atT/at																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465004	120465004	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1360	945	550	0	ENST00000256646.2:c.5068C>G	p.Leu1690Val	p.L1690V	ENST00000256646	NM_024408.3	1690	Ctg/Gtg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207025	1207057	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGCCGCAAGCGGGCCAAGCTCATCGGCAAGT	CGCGCCGCAAGCGGGCCAAGCTCATCGGCAAGT	TTGGCCCG			P-0019179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	116	686	3	ENST00000326873.7:c.113_145delinsTTGGCCCG	p.Pro38LeufsTer5	p.P38Lfs*5	ENST00000326873	NM_000455.4	38	cCGCGCCGCAAGCGGGCCAAGCTCATCGGCAAGTac/cTTGGCCCGac																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469995	25470003	+	inframe_deletion	In_Frame_Del	DEL	CGAGCTCAG	CGAGCTCAG	-			P-0019179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	174	534	0	ENST00000264709.3:c.1039_1047del	p.Leu347_Ser349del	p.L347_S349del	ENST00000264709	NM_175629.2	347	CTGAGCTCG/-																																																																															
EP300	2033	MSKCC	GRCh37	22	41523645	41523645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	218	763	1	ENST00000263253.7:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000263253	NM_001429.3	354	cGg/cAg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798109	32798109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	263	757	0	ENST00000374899.4:c.1570G>A	p.Gly524Arg	p.G524R	ENST00000374899	NM_018833.2	524	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0019516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	98	685	1	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257434	16257434	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	41	774	0	ENST00000375759.3:c.4699G>A	p.Glu1567Lys	p.E1567K	ENST00000375759	NM_015001.2	1567	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256882	16256882	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	52	956	0	ENST00000375759.3:c.4147G>C	p.Asp1383His	p.D1383H	ENST00000375759	NM_015001.2	1383	Gac/Cac																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805724	32805725	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAGC			P-0019516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	85	768	0	ENST00000374899.4:c.283_286dup	p.Ser96CysfsTer72	p.S96Cfs*72	ENST00000374899	NM_018833.2	96	tca/tGCTTca																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87339211	87339211	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	56	820	0	ENST00000277120.3:c.793T>A	p.Ser265Thr	p.S265T	ENST00000277120		265	Tct/Act																																																																															
MET	4233	MSKCC	GRCh37	7	116411868	116411883	+	intron_variant	Intron	DEL	TCTTTAACAAGCTCTT	TCTTTAACAAGCTCTT	-			P-0019588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	241	1058	0	ENST00000397752.3:c.2888-30_2888-15del		p.*963*	ENST00000397752	NM_000245.2																																																																																	
RB1	5925	MSKCC	GRCh37	13	48955382	48955382	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs1485450031		P-0019612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	42	367	0	ENST00000267163.4:c.1499-1G>A		p.X500_splice	ENST00000267163	NM_000321.2	500																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913396		P-0019612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	60	445	0	ENST00000349496.5:c.95A>G	p.Asp32Gly	p.D32G	ENST00000349496	NM_001904.3	32	gAc/gGc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396315	396315	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	144	1139	3	ENST00000262320.3:c.711C>A	p.Tyr237Ter	p.Y237*	ENST00000262320	NM_003502.3	237	taC/taA																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25468888	25468888	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs761608224		P-0019612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	111	1086	0	ENST00000264709.3:c.1474+1G>A		p.X492_splice	ENST00000264709	NM_175629.2	492																																																																																
MET	4233	MSKCC	GRCh37	7	116411886	116411898	+	splice_region_variant,intron_variant	Splice_Region	DEL	TTTCTCTCTGTTT	TTTCTCTCTGTTT	-			P-0020363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	93	1240	0	ENST00000397752.3:c.2888-16_2888-4del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
MED12	9968	MSKCC	GRCh37	X	70345970	70345970	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	34	1118	0	ENST00000374080.3:c.2507T>C	p.Leu836Pro	p.L836P	ENST00000374080		836	cTt/cCt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445349	49445349	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	66	1257	0	ENST00000301067.7:c.2117del	p.Pro706LeufsTer224	p.P706Lfs*224	ENST00000301067	NM_003482.3	706	cCt/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0021112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	628	973	0	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195988	102195988	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs755783862		P-0021112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	218	480	0	ENST00000263464.3:c.748C>G	p.Leu250Val	p.L250V	ENST00000263464	NM_001165.4	250	Ctg/Gtg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43730603	43730603	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	233	700	0	ENST00000382044.4:c.3110C>G	p.Thr1037Ser	p.T1037S	ENST00000382044	NM_001141980.1	1037	aCc/aGc																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732542	74732542	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	23	147	0	ENST00000359995.5:c.367A>T	p.Arg123Trp	p.R123W	ENST00000359995	NM_001195427.1	123	Agg/Tgg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445112	89445112	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0021112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	63	401	0	ENST00000336596.2:c.1431+1G>T		p.X477_splice	ENST00000336596	NM_005233.5	477																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157469829	157469829	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	777	975	4	ENST00000346085.5:c.2623G>T	p.Gly875Cys	p.G875C	ENST00000346085	NM_020732.3	875	Ggt/Tgt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984002	2984023	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGGTTAGCAGCTCCACGCGC	GAAGGTTAGCAGCTCCACGCGC	-			P-0021112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	888	991	0	ENST00000396946.4:c.507_528del	p.Val171SerfsTer6	p.V171Sfs*6	ENST00000396946	NM_032415.4	169	acGCGCGTGGAGCTGCTAACCTTC/ac																																																																															
MET	4233	MSKCC	GRCh37	7	116411861	116411889	+	intron_variant	Intron	DEL	ATAGCCGTCTTTAACAAGCTCTTTCTTTC	ATAGCCGTCTTTAACAAGCTCTTTCTTTC	-			P-0021112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	915	1490	0	ENST00000397752.3:c.2888-42_2888-14del		p.*963*	ENST00000397752	NM_000245.2																																																																																	
RAD21	5885	MSKCC	GRCh37	8	117861199	117861199	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	228	803	1	ENST00000297338.2:c.1690C>A	p.Leu564Ile	p.L564I	ENST00000297338	NM_006265.2	564	Ctt/Att																																																																															
JAK2	3717	MSKCC	GRCh37	9	5081802	5081802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	132	528	0	ENST00000381652.3:c.2512G>C	p.Asp838His	p.D838H	ENST00000381652	NM_004972.3	838	Gac/Cac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291801	15291801	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	298	1124	1	ENST00000263388.2:c.2965C>A	p.Leu989Ile	p.L989I	ENST00000263388	NM_000435.2	989	Ctc/Atc																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0022129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	47	1074	1	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																															
MAX	4149	MSKCC	GRCh37	14	65560494	65560494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	30	683	1	ENST00000358664.4:c.103C>T	p.Arg35Cys	p.R35C	ENST00000358664	NM_002382.4	35	Cgt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427086	49427133	+	inframe_deletion	In_Frame_Del	DEL	ATGCCCTGGGGCCCCTGGGGTGGTTGAGGGGACAGCTGCTGGACCAGG	ATGCCCTGGGGCCCCTGGGGTGGTTGAGGGGACAGCTGCTGGACCAGG	-			P-0022765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	26	663	0	ENST00000301067.7:c.11355_11402del	p.Val3787_Leu3802del	p.V3787_L3802del	ENST00000301067	NM_003482.3	3785	ctCCTGGTCCAGCAGCTGTCCCCTCAACCACCCCAGGGGCCCCAGGGCATg/ctg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0023626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	114	574	5	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2126097	2126119	+	frameshift_variant	Frame_Shift_Del	DEL	CATCACGTCATAGCCATGTGGTT	CATCACGTCATAGCCATGTGGTT	-			P-0023626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	108	671	0	ENST00000219476.3:c.2673_2695del	p.His891GlnfsTer16	p.H891Qfs*16	ENST00000219476	NM_000548.3	890	CATCACGTCATAGCCATGTGGTTc/c																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660625	227660626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	177	527	0	ENST00000305123.5:c.2829dup	p.Met944AspfsTer31	p.M944Dfs*31	ENST00000305123	NM_005544.2	943	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0024220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	145	997	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10247784	10247784	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745789285		P-0024220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	133	1036	1	ENST00000340748.4:c.4418G>A	p.Arg1473His	p.R1473H	ENST00000340748		1473	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577555	7577555	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs375874539		P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	54	877	0	ENST00000269305.4:c.726C>G	p.Cys242Trp	p.C242W	ENST00000269305	NM_001126112.2	242	tgC/tgG																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306631	41306631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	56	898	3	ENST00000373198.4:c.1028C>T	p.Pro343Leu	p.P343L	ENST00000373198	NM_133170.3	343	cCc/cTc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466375	120466375	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	38	722	0	ENST00000256646.2:c.4744G>T	p.Asp1582Tyr	p.D1582Y	ENST00000256646	NM_024408.3	1582	Gac/Tac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056321	27056321	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	53	573	0	ENST00000324856.7:c.1317G>C	p.Gln439His	p.Q439H	ENST00000324856	NM_006015.4	439	caG/caC																																																																															
TET1	80312	MSKCC	GRCh37	10	70332972	70332972	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	36	897	3	ENST00000373644.4:c.877G>T	p.Glu293Ter	p.E293*	ENST00000373644	NM_030625.2	293	Gaa/Taa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609520	81609520	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs749925257		P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	39	595	0	ENST00000298171.2:c.1118C>G	p.Pro373Arg	p.P373R	ENST00000298171	NM_000369.2	373	cCc/cGc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88690614	88690614	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	43	618	0	ENST00000360948.2:c.416T>A	p.Leu139His	p.L139H	ENST00000360948	NM_001012338.2	139	cTc/cAc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78921118	78921118	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	40	760	0	ENST00000306801.3:c.3232G>T	p.Gly1078Cys	p.G1078C	ENST00000306801	NM_020761.2	1078	Ggc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207033	1207033	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	58	805	0	ENST00000326873.7:c.122del	p.Lys41SerfsTer10	p.K41Sfs*10	ENST00000326873	NM_000455.4	41	Aag/ag																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17389671	17389671	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	42	775	0	ENST00000359435.4:c.806del	p.Gly269AlafsTer100	p.G269Afs*100	ENST00000359435	NM_001033549.1	268	atG/at																																																																															
JAK3	3718	MSKCC	GRCh37	19	17941028	17941028	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	64	970	0	ENST00000458235.1:c.3097-1G>T		p.X1033_splice	ENST00000458235	NM_000215.3	1033																																																																																
POLD1	5424	MSKCC	GRCh37	19	50910258	50910258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	69	863	0	ENST00000440232.2:c.1513C>A	p.Arg505Ser	p.R505S	ENST00000440232	NM_002691.3	505	Cgc/Agc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225370684	225370684	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	47	542	0	ENST00000264414.4:c.1195G>T	p.Gly399Ter	p.G399*	ENST00000264414	NM_003590.4	399	Gga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259521	89259521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	30	637	1	ENST00000336596.2:c.665C>A	p.Ser222Tyr	p.S222Y	ENST00000336596	NM_005233.5	222	tCc/tAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534440	187534440	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200812915		P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	22	665	0	ENST00000441802.2:c.9286C>T	p.Leu3096Phe	p.L3096F	ENST00000441802	NM_005245.3	3096	Ctc/Ttc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751568	57751568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	30	498	0	ENST00000274289.3:c.1423G>T	p.Val475Leu	p.V475L	ENST00000274289	NM_006622.3	475	Gtg/Ttg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149506143	149506143	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	29	778	0	ENST00000261799.4:c.1614C>G	p.Ile538Met	p.I538M	ENST00000261799	NM_002609.3	538	atC/atG																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332918	152332918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	56	489	0	ENST00000206249.3:c.1224G>C	p.Leu408Phe	p.L408F	ENST00000206249	NM_000125.3	408	ttG/ttC																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205301	38205301	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	101	1213	0	ENST00000317025.8:c.389C>G	p.Pro130Arg	p.P130R	ENST00000317025	NM_023034.1	130	cCt/cGt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250445	110250445	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	25	755	0	ENST00000374672.4:c.230G>T	p.Gly77Val	p.G77V	ENST00000374672	NM_004235.4	77	gGc/gTc																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127915943	127915943	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	42	767	1	ENST00000373547.4:c.538G>T	p.Glu180Ter	p.E180*	ENST00000373547	NM_002721.4	180	Gaa/Taa																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0025280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	1348	767	1	ENST00000397752.3:c.3028+1G>A		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
TP53	7157	MSKCC	GRCh37	17	7577566	7577567	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	320	627	0	ENST00000269305.4:c.714dup	p.Asn239Ter	p.N239*	ENST00000269305	NM_001126112.2	238	-/T																																																																															
RAD50	10111	MSKCC	GRCh37	5	131953826	131953826	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs368980595		P-0025280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	72	431	0	ENST00000265335.6:c.3229C>T	p.Arg1077Ter	p.R1077*	ENST00000265335		1077	Cga/Tga																																																																															
EP300	2033	MSKCC	GRCh37	22	41573146	41573155	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAAGCTCC	CAGAAGCTCC	-			P-0025280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	115	637	0	ENST00000263253.7:c.5431_5440del	p.Gln1811GlyfsTer92	p.Q1811Gfs*92	ENST00000263253	NM_001429.3	1811	CAGAAGCTCCgg/gg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971133	13971133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	87	222	1	ENST00000405192.2:c.796G>A	p.Asp266Asn	p.D266N	ENST00000405192	NM_001163147.1	266	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0025836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	423	748	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974744	21974775	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	-			P-0025836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	95	214	0	ENST00000304494.5:c.52_83del	p.Thr18AlafsTer15	p.T18Afs*15	ENST00000304494	NM_000077.4	18	ACGGCCGCGGCCCGGGGTCGGGTAGAGGAGGTg/g																																																																															
BRCA2	675	MSKCC	GRCh37	13	32893363	32893363	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398122741		P-0026387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	409	575	0	ENST00000380152.3:c.217C>T	p.Gln73Ter	p.Q73*	ENST00000380152		73	Cag/Tag																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793244	242793244	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs773969430		P-0026387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	300	703	1	ENST00000334409.5:c.833G>T	p.Arg278Met	p.R278M	ENST00000334409	NM_005018.2	278	aGg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0026569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			776	27	615	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0027554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	83	452	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067192	37067192	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201673334		P-0027554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	79	366	0	ENST00000231790.2:c.1103C>T	p.Ser368Leu	p.S368L	ENST00000231790	NM_000249.3	368	tCg/tTg																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs483352822		P-0027554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	115	457	1	ENST00000368323.3:c.270G>A	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atA																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18650562	18650562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	73	343	0	ENST00000266497.5:c.2773G>A	p.Asp925Asn	p.D925N	ENST00000266497		925	Gat/Aat																																																																															
KDM5A	5927	MSKCC	GRCh37	12	402057	402057	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	88	367	0	ENST00000399788.2:c.4734G>C	p.Glu1578Asp	p.E1578D	ENST00000399788	NM_001042603.1	1578	gaG/gaC																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112924285	112924285	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	127	446	0	ENST00000351677.2:c.1231A>G	p.Thr411Ala	p.T411A	ENST00000351677	NM_002834.3	411	Acg/Gcg																																																																															
KIT	3815	MSKCC	GRCh37	4	55573344	55573344	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	87	410	0	ENST00000288135.5:c.1006G>C	p.Glu336Gln	p.E336Q	ENST00000288135	NM_000222.2	336	Gaa/Caa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	142950031	142950031	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	85	381	0	ENST00000262992.4:c.2679C>G	p.Ile893Met	p.I893M	ENST00000262992	NM_001101669.1	893	atC/atG																																																																															
AR	367	MSKCC	GRCh37	X	66765955	66765955	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1021234843		P-0027554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	171	621	1	ENST00000374690.3:c.967G>A	p.Glu323Lys	p.E323K	ENST00000374690	NM_000044.3	323	Gag/Aag																																																																															
MED12	9968	MSKCC	GRCh37	X	70344096	70344098	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0027554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	140	582	0	ENST00000374080.3:c.1835_1837del	p.Asn612del	p.N612del	ENST00000374080		611	cACAac/cac																																																																															
MET	4233	MSKCC	GRCh37	7	116411875	116411898	+	splice_region_variant,intron_variant	Splice_Region	DEL	CAAGCTCTTTCTTTCTCTCTGTTT	CAAGCTCTTTCTTTCTCTCTGTTT	-			P-0028694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	90	909	0	ENST00000397752.3:c.2888-28_2888-5del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
RBM10	8241	MSKCC	GRCh37	X	47039279	47039279	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0028694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	50	829	0	ENST00000329236.7:c.672del	p.Ile225SerfsTer6	p.I225Sfs*6	ENST00000329236	NM_001204466.1	224	aCc/ac																																																																															
BTK	695	MSKCC	GRCh37	X	100629553	100629553	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	41	643	0	ENST00000308731.7:c.211A>C	p.Lys71Gln	p.K71Q	ENST00000308731	NM_000061.2	71	Aaa/Caa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267393	198267393	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	66	599	0	ENST00000335508.6:c.1964A>G	p.Lys655Arg	p.K655R	ENST00000335508	NM_012433.2	655	aAg/aGg																																																																															
MET	4233	MSKCC	GRCh37	7	116411882	116411898	+	splice_region_variant,intron_variant	Splice_Region	DEL	TTTCTTTCTCTCTGTTT	TTTCTTTCTCTCTGTTT	-			P-0029472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	244	902	0	ENST00000397752.3:c.2888-20_2888-4del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	463	633	1	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045709	26045709	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	99	250	0	ENST00000540144.1:c.71A>G	p.Lys24Arg	p.K24R	ENST00000540144	NM_003531.2	24	aAa/aGa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274018	10274018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1354238435		P-0031076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	168	613	4	ENST00000330684.3:c.251C>T	p.Thr84Met	p.T84M	ENST00000330684	NM_001134407.1	84	aCg/aTg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198262742	198262742	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	308	362	0	ENST00000335508.6:c.3233T>G	p.Val1078Gly	p.V1078G	ENST00000335508	NM_012433.2	1078	gTc/gGc																																																																															
EP300	2033	MSKCC	GRCh37	22	41545877	41545877	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	196	609	0	ENST00000263253.7:c.2492C>A	p.Ser831Ter	p.S831*	ENST00000263253	NM_001429.3	831	tCa/tAa																																																																															
MET	4233	MSKCC	GRCh37	7	116412027	116412042	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AGCTACTTTTCCAGAA	AGCTACTTTTCCAGAA	-			P-0031076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	875	565	0	ENST00000397752.3:c.3012_3027del	p.Ala1005IlefsTer19	p.A1005Ifs*19	ENST00000397752	NM_000245.2	1004	cgAGCTACTTTTCCAGAA/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	92	686	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40490814	40490814	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	57	300	0	ENST00000264657.5:c.485T>G	p.Met162Arg	p.M162R	ENST00000264657	NM_139276.2	162	aTg/aGg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884469	151884469	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	43	287	0	ENST00000262189.6:c.4886T>C	p.Met1629Thr	p.M1629T	ENST00000262189	NM_170606.2	1629	aTg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	154	538	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981516	70981516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	125	897	1	ENST00000276594.2:c.580C>T	p.Arg194Trp	p.R194W	ENST00000276594	NM_024504.3	194	Cgg/Tgg																																																																															
MET	4233	MSKCC	GRCh37	7	116411619	116411622	+	frameshift_variant	Frame_Shift_Del	DEL	GATT	GATT	-			P-0033896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	90	520	0	ENST00000397752.3:c.2803_2806del	p.Ile935LeufsTer20	p.I935Lfs*20	ENST00000397752	NM_000245.2	933	gGATTg/gg																																																																															
MET	4233	MSKCC	GRCh37	7	116411872	116411891	+	intron_variant	Intron	DEL	TAACAAGCTCTTTCTTTCTC	TAACAAGCTCTTTCTTTCTC	-			P-0033896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	270	965	0	ENST00000397752.3:c.2888-30_2888-11del		p.*963*	ENST00000397752	NM_000245.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578234	7578234	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs786202222		P-0034020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	51	434	0	ENST00000269305.4:c.615T>A	p.Tyr205Ter	p.Y205*	ENST00000269305	NM_001126112.2	205	taT/taA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	56	511	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	63	641	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	15	412	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867502	45867502	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1161399233		P-0034040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	29	742	0	ENST00000391945.4:c.806C>T	p.Thr269Met	p.T269M	ENST00000391945	NM_000400.3	269	aCg/aTg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434685	99434685	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs543792941		P-0034040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	40	636	1	ENST00000268035.6:c.772G>A	p.Gly258Ser	p.G258S	ENST00000268035	NM_000875.3	258	Ggt/Agt																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186503977	186503977	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	21	388	0	ENST00000323963.5:c.542T>C	p.Val181Ala	p.V181A	ENST00000323963		181	gTt/gCt																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926888	112926888	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs397507546		P-0035139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	83	586	0	ENST00000351677.2:c.1508G>T	p.Gly503Val	p.G503V	ENST00000351677	NM_002834.3	503	gGg/gTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710625	114710625	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	72	425	0	ENST00000543371.1:c.110C>G	p.Ala37Gly	p.A37G	ENST00000543371	NM_001198531.1	37	gCa/gGa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81606123	81606123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	68	546	0	ENST00000298171.2:c.793C>T	p.Leu265Phe	p.L265F	ENST00000298171	NM_000369.2	265	Ctt/Ttt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95556978	95556978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	100	542	1	ENST00000343455.3:c.5626G>T	p.Gly1876Trp	p.G1876W	ENST00000343455	NM_177438.2	1876	Ggg/Tgg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89858407	89858407	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757760966		P-0035139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	116	695	0	ENST00000389301.3:c.1153C>T	p.His385Tyr	p.H385Y	ENST00000389301	NM_000135.2	385	Cac/Tac																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161673	47161673	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0035139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	82	233	0	ENST00000409792.3:c.4453del	p.Arg1485GlufsTer30	p.R1485Efs*30	ENST00000409792	NM_014159.6	1485	Aga/ga																																																																															
BCOR	54880	MSKCC	GRCh37	X	39911406	39911406	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs867019053		P-0035139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	126	548	0	ENST00000378444.4:c.5224G>T	p.Glu1742Ter	p.E1742*	ENST00000378444	NM_001123385.1	1742	Gag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039903	47039903	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0035139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	99	782	0	ENST00000329236.7:c.1012C>T	p.Gln338Ter	p.Q338*	ENST00000329236	NM_001204466.1	338	Cag/Tag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295801	212295801	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1423325504		P-0035162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	34	573	1	ENST00000342788.4:c.2512C>T	p.Arg838Ter	p.R838*	ENST00000342788	NM_005235.2	838	Cga/Tga																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18443936	18443936	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1195125518		P-0035162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	32	382	0	ENST00000266497.5:c.909T>G	p.Phe303Leu	p.F303L	ENST00000266497		303	ttT/ttG																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783871	50783871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	52	670	0	ENST00000398568.2:c.262G>A	p.Asp88Asn	p.D88N	ENST00000398568	NM_001042412.1	88	Gat/Aat																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2191029	2191029	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	34	362	0	ENST00000398665.3:c.283C>A	p.Pro95Thr	p.P95T	ENST00000398665	NM_032482.2	95	Ccc/Acc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120363	94120363	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	42	333	0	ENST00000369303.4:c.688G>T	p.Val230Phe	p.V230F	ENST00000369303	NM_004440.3	230	Gtt/Ttt																																																																															
MET	4233	MSKCC	GRCh37	7	116411856	116411880	+	intron_variant	Intron	DEL	CCATGATAGCCGTCTTTAACAAGCT	CCATGATAGCCGTCTTTAACAAGCT	-			P-0035162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	1404	966	0	ENST00000397752.3:c.2888-46_2888-22del		p.*963*	ENST00000397752	NM_000245.2																																																																																	
PTPRD	5789	MSKCC	GRCh37	9	8465595	8465595	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	66	608	0	ENST00000356435.5:c.3585C>A	p.His1195Gln	p.H1195Q	ENST00000356435		1195	caC/caA																																																																															
BCOR	54880	MSKCC	GRCh37	X	39916438	39916438	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	52	629	0	ENST00000378444.4:c.4565A>G	p.Asp1522Gly	p.D1522G	ENST00000378444	NM_001123385.1	1522	gAt/gGt																																																																															
ATRX	546	MSKCC	GRCh37	X	76907659	76907659	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	56	706	0	ENST00000373344.5:c.4502A>T	p.Glu1501Val	p.E1501V	ENST00000373344	NM_000489.3	1501	gAa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0035372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	150	778	3	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0035372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	75	578	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635191	87635191	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367769334		P-0035372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	49	640	2	ENST00000277120.3:c.2243C>T	p.Thr748Met	p.T748M	ENST00000277120		748	aCg/aTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566818	212566818	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762866612		P-0035372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	76	443	0	ENST00000342788.4:c.1363G>A	p.Ala455Thr	p.A455T	ENST00000342788	NM_005235.2	455	Gca/Aca																																																																															
WT1	7490	MSKCC	GRCh37	11	32456623	32456623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	23	92	1	ENST00000332351.3:c.269G>A	p.Gly90Asp	p.G90D	ENST00000332351	NM_024426.4	90	gGc/gAc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41223255	41223255	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0035372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	75	506	1	ENST00000357654.3:c.4676A>G	p.Glu1559Gly	p.E1559G	ENST00000357654	NM_007294.3	1559	gAg/gGg																																																																															
MITF	4286	MSKCC	GRCh37	3	70014064	70014064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	38	612	0	ENST00000352241.4:c.1228G>T	p.Asp410Tyr	p.D410Y	ENST00000352241	NM_198159.2	410	Gat/Tat																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591315	67591318	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	GAGT	GAGT	-			P-0035372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	56	353	0	ENST00000274335.5:c.1813_1814+2del		p.X605_splice	ENST00000274335		605																																																																																
HGF	3082	MSKCC	GRCh37	7	81336660	81336660	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	32	364	0	ENST00000222390.5:c.1562G>T	p.Gly521Val	p.G521V	ENST00000222390	NM_000601.4	521	gGa/gTa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030570	47030571	+	intron_variant	Intron	INS	-	-	GAGGAGGAGGAGGAT			P-0035372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	21	394	0	ENST00000329236.7:c.201+1688_201+1702dup		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0035647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	220	564	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	106	269	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
NUF2	83540	MSKCC	GRCh37	1	163313598	163313598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	96	211	1	ENST00000271452.3:c.745G>A	p.Glu249Lys	p.E249K	ENST00000271452	NM_145697.2	249	Gag/Aag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965427	18965427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	159	373	1	ENST00000262803.5:c.1174G>A	p.Ala392Thr	p.A392T	ENST00000262803	NM_002911.3	392	Gcc/Acc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021674	31021674	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	53	381	1	ENST00000375687.4:c.1673A>G	p.Glu558Gly	p.E558G	ENST00000375687	NM_015338.5	558	gAa/gGa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147565	47147566	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0035647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	101	382	0	ENST00000409792.3:c.4760_4761del	p.Lys1587ArgfsTer3	p.K1587Rfs*3	ENST00000409792	NM_014159.6	1587	aAA/a																																																																															
MST1	4485	MSKCC	GRCh37	3	49725088	49725088	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	127	580	0	ENST00000449682.2:c.256A>G	p.Asn86Asp	p.N86D	ENST00000449682	NM_020998.3	86	Aac/Gac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	319	371	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	84	311	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0036478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	292	531	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528621	89528621	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780470195		P-0036478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	61	142	0	ENST00000336596.2:c.2921C>T	p.Thr974Met	p.T974M	ENST00000336596	NM_005233.5	974	aCg/aTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161981	47161981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	98	398	0	ENST00000409792.3:c.4145C>T	p.Ala1382Val	p.A1382V	ENST00000409792	NM_014159.6	1382	gCt/gTt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265433	152265433	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	81	406	0	ENST00000206249.3:c.886C>G	p.Leu296Val	p.L296V	ENST00000206249	NM_000125.3	296	Ctc/Gtc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	53	298	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317461	1317461	+	downstream_gene_variant	3'Flank	SNP	C	C	T	rs781459586		P-0036522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	56	658	1				ENST00000381566																																																																																		
CTLA4	1493	MSKCC	GRCh37	2	204735510	204735510	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759232662		P-0036522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	56	406	0	ENST00000302823.3:c.311C>T	p.Thr104Met	p.T104M	ENST00000302823	NM_005214.4	104	aCg/aTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968233	134968233	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753895808		P-0036522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	221	562	0	ENST00000398015.3:c.2746G>A	p.Val916Met	p.V916M	ENST00000398015	NM_004441.4	916	Gtg/Atg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575068	48575068	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0036522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	63	367	0	ENST00000342988.3:c.262A>T	p.Lys88Ter	p.K88*	ENST00000342988	NM_005359.5	88	Aaa/Taa																																																																															
HGF	3082	MSKCC	GRCh37	7	81339554	81339554	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs571102402		P-0036522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	44	448	0	ENST00000222390.5:c.1450G>A	p.Val484Ile	p.V484I	ENST00000222390	NM_000601.4	484	Gta/Ata																																																																															
TET1	80312	MSKCC	GRCh37	10	70406637	70406637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	68	595	0	ENST00000373644.4:c.4152del	p.Glu1384AspfsTer17	p.E1384Dfs*17	ENST00000373644	NM_030625.2	1384	gAa/ga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881350	37881350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	101	654	2	ENST00000269571.5:c.2542G>A	p.Ala848Thr	p.A848T	ENST00000269571		848	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501191		P-0036639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	73	615	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508499	106508499	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752602335		P-0036639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	28	258	1	ENST00000359195.3:c.493G>A	p.Val165Ile	p.V165I	ENST00000359195	NM_002649.2	165	Gtc/Atc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3651028	3651028	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372956623		P-0036639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	99	541	0	ENST00000294008.3:c.1115G>A	p.Arg372Gln	p.R372Q	ENST00000294008	NM_032444.2	372	cGg/cAg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950256	38950256	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs754918290		P-0036639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	89	628	0	ENST00000357387.3:c.3694A>G	p.Met1232Val	p.M1232V	ENST00000357387	NM_152756.3	1232	Atg/Gtg																																																																															
LYN	4067	MSKCC	GRCh37	8	56922644	56922644	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	63	557	0	ENST00000519728.1:c.1514A>C	p.Glu505Ala	p.E505A	ENST00000519728	NM_002350.3	505	gAa/gCa																																																																															
MET	4233	MSKCC	GRCh37	7	116411871	116411874	+	intron_variant	Intron	DEL	TTAA	TTAA	G			P-0036639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	60	918	0	ENST00000397752.3:c.2888-32_2888-29delinsG		p.*963*	ENST00000397752	NM_000245.2																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	286	637	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
IL10	3586	MSKCC	GRCh37	1	206944257	206944257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	111	421	0	ENST00000423557.1:c.373C>T	p.Arg125Cys	p.R125C	ENST00000423557	NM_000572.2	125	Cgc/Tgc																																																																															
NF1	4763	MSKCC	GRCh37	17	29663825	29663825	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	236	584	0	ENST00000358273.4:c.6320T>C	p.Val2107Ala	p.V2107A	ENST00000358273	NM_001042492.2	2107	gTt/gCt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441283	52441283	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1385279115		P-0037832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	160	630	2	ENST00000460680.1:c.487C>T	p.Arg163Trp	p.R163W	ENST00000460680	NM_004656.3	163	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577074	7577075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	627	730	0	ENST00000269305.4:c.863dup	p.Asn288LysfsTer18	p.N288Kfs*18	ENST00000269305	NM_001126112.2	288	aat/aaAt																																																																															
APC	324	MSKCC	GRCh37	5	112175447	112175447	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	208	376	0	ENST00000257430.4:c.4156A>T	p.Arg1386Ter	p.R1386*	ENST00000257430	NM_000038.5	1386	Aga/Tga																																																																															
KDR	3791	MSKCC	GRCh37	4	55968196	55968196	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0037972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	228	452	0	ENST00000263923.4:c.2135-1G>T		p.X712_splice	ENST00000263923	NM_002253.2	712																																																																																
MAP2K4	6416	MSKCC	GRCh37	17	12011106	12011106	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0037972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	237	299	0	ENST00000353533.5:c.514-1G>T		p.X172_splice	ENST00000353533	NM_003010.3	172																																																																																
DNMT3A	1788	MSKCC	GRCh37	2	25470014	25470014	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	36	465	0	ENST00000264709.3:c.1028A>C	p.Lys343Thr	p.K343T	ENST00000264709	NM_175629.2	343	aAg/aCg																																																																															
MED12	9968	MSKCC	GRCh37	X	70349029	70349029	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	216	683	1	ENST00000374080.3:c.3541A>G	p.Lys1181Glu	p.K1181E	ENST00000374080		1181	Aag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0038239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	222	677	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604789	48604789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	137	479	0	ENST00000342988.3:c.1611C>G	p.Asp537Glu	p.D537E	ENST00000342988	NM_005359.5	537	gaC/gaG																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118885	70118885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	211	623	2	ENST00000245479.2:c.457C>T	p.Pro153Ser	p.P153S	ENST00000245479	NM_000346.3	153	Ccc/Tcc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857476	9857476	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145602289		P-0038239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	141	547	1	ENST00000330684.3:c.3925C>T	p.Arg1309Trp	p.R1309W	ENST00000330684	NM_001134407.1	1309	Cgg/Tgg																																																																															
CCND2	894	MSKCC	GRCh37	12	4387952	4387952	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	814	584	0	ENST00000261254.3:c.438G>C	p.Lys146Asn	p.K146N	ENST00000261254	NM_001759.3	146	aaG/aaC																																																																															
HGF	3082	MSKCC	GRCh37	7	81392119	81392119	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	100	323	0	ENST00000222390.5:c.158T>G	p.Ile53Arg	p.I53R	ENST00000222390	NM_000601.4	53	aTa/aGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	233	919	0	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	294	769	9	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	161	795	1	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741915	17741915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	75	255	0	ENST00000250003.3:c.586G>A	p.Asp196Asn	p.D196N	ENST00000250003	NM_002478.4	196	Gac/Aac																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	47	895	3	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772951	135772951	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs397514875		P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	93	380	0	ENST00000298552.3:c.2672del	p.Asn891ThrfsTer40	p.N891Tfs*40	ENST00000298552	NM_001162426.1	891	aAc/ac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107096	27107096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	26	543	0	ENST00000324856.7:c.6707G>C	p.Arg2236Pro	p.R2236P	ENST00000324856	NM_006015.4	2236	cGc/cCc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	126	681	2	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
CCND3	896	MSKCC	GRCh37	6	41903745	41903746	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	161	817	0	ENST00000372991.4:c.811dup	p.Arg271ProfsTer53	p.R271Pfs*53	ENST00000372991	NM_001760.3	271	cgg/cCgg																																																																															
ABL1	25	MSKCC	GRCh37	9	133759905	133759905	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369171735		P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	44	885	1	ENST00000318560.5:c.2228C>T	p.Thr743Met	p.T743M	ENST00000318560	NM_005157.4	743	aCg/aTg																																																																															
ALK	238	MSKCC	GRCh37	2	29416659	29416659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	105	434	0	ENST00000389048.3:c.4294C>T	p.Arg1432Trp	p.R1432W	ENST00000389048	NM_004304.4	1432	Cgg/Tgg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	32	641	1	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210697	36210697	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	173	864	1	ENST00000222270.7:c.448C>T	p.Arg150Ter	p.R150*	ENST00000222270	NM_014727.1	150	Cga/Tga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129400	2129400	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	148	882	2	ENST00000219476.3:c.3259del	p.Glu1087SerfsTer16	p.E1087Sfs*16	ENST00000219476	NM_000548.3	1085	tcG/tc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739012	145739012	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373292946		P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	47	747	0	ENST00000428558.2:c.2143C>T	p.Arg715Trp	p.R715W	ENST00000428558	NM_004260.3	715	Cgg/Tgg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921541	39921541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	177	805	0	ENST00000378444.4:c.4279C>T	p.Pro1427Ser	p.P1427S	ENST00000378444	NM_001123385.1	1427	Cca/Tca																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858503	27858503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	58	367	0	ENST00000359303.2:c.68C>T	p.Thr23Ile	p.T23I	ENST00000359303	NM_003535.2	23	aCc/aTc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912186	114912186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	42	602	0	ENST00000543371.1:c.1256C>T	p.Ala419Val	p.A419V	ENST00000543371	NM_001198531.1	419	gCg/gTg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850965	63850965	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	118	628	0	ENST00000279873.7:c.1746del	p.Phe582LeufsTer47	p.F582Lfs*47	ENST00000279873	NM_032199.2	581	tgT/tg																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112767332	112767332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	57	468	0	ENST00000369452.4:c.1205C>T	p.Thr402Ile	p.T402I	ENST00000369452	NM_007373.3	402	aCc/aTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133219486	133219487	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs754220952		P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	193	880	0	ENST00000320574.5:c.4647dup	p.Lys1550GlnfsTer11	p.K1550Qfs*11	ENST00000320574	NM_006231.2	1549	-/C																																																																															
BLM	641	MSKCC	GRCh37	15	91312717	91312717	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1265964518		P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	93	406	0	ENST00000355112.3:c.2456A>G	p.Gln819Arg	p.Q819R	ENST00000355112	NM_000057.2	819	cAg/cGg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347755	347755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	146	994	2	ENST00000262320.3:c.1751C>A	p.Ala584Asp	p.A584D	ENST00000262320	NM_003502.3	584	gCt/gAt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646713	23646713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	26	612	0	ENST00000261584.4:c.1154C>T	p.Ala385Val	p.A385V	ENST00000261584	NM_024675.3	385	gCa/gTa																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30134381	30134381	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	43	826	0	ENST00000263025.4:c.150G>T	p.Glu50Asp	p.E50D	ENST00000263025	NM_002746.2	50	gaG/gaT																																																																															
CDH1	999	MSKCC	GRCh37	16	68863665	68863665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	119	603	0	ENST00000261769.5:c.2404G>A	p.Ala802Thr	p.A802T	ENST00000261769	NM_004360.3	802	Gcc/Acc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56412983	56412983	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	90	381	1	ENST00000348428.3:c.1997A>G	p.His666Arg	p.H666R	ENST00000348428	NM_006785.3	666	cAt/cGt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223673	36223673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	50	1111	0	ENST00000222270.7:c.6223G>A	p.Val2075Met	p.V2075M	ENST00000222270	NM_014727.1	2075	Gtg/Atg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855577	45855577	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764868582		P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	234	890	0	ENST00000391945.4:c.2080C>T	p.Pro694Ser	p.P694S	ENST00000391945	NM_000400.3	694	Ccc/Tcc																																																																															
CASP8	841	MSKCC	GRCh37	2	202149570	202149570	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	61	469	0	ENST00000358485.4:c.1014del	p.Phe338LeufsTer11	p.F338Lfs*11	ENST00000358485	NM_001080125.1	337	caT/ca																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164877	36164877	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200104203		P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	187	1011	0	ENST00000300305.3:c.998C>T	p.Pro333Leu	p.P333L	ENST00000300305		333	cCg/cTg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42861448	42861448	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	108	579	0	ENST00000398585.3:c.422T>G	p.Leu141Arg	p.L141R	ENST00000398585	NM_001135099.1	141	cTa/cGa																																																																															
CRKL	1399	MSKCC	GRCh37	22	21304083	21304083	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	39	676	0	ENST00000354336.3:c.862T>C	p.Phe288Leu	p.F288L	ENST00000354336	NM_005207.3	288	Ttt/Ctt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149439387	149439387	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1392968737		P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	120	730	3	ENST00000286301.3:c.2008G>A	p.Asp670Asn	p.D670N	ENST00000286301	NM_005211.3	670	Gac/Aac																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520286	176520286	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764568046		P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	66	783	0	ENST00000292408.4:c.1205C>T	p.Pro402Leu	p.P402L	ENST00000292408	NM_213647.1	402	cCg/cTg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323308	31323308	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	59	149	0	ENST00000412585.2:c.681C>A	p.Cys227Ter	p.C227*	ENST00000412585	NM_005514.6	227	tgC/tgA																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38194848	38194848	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	41	604	0	ENST00000317025.8:c.885G>T	p.Glu295Asp	p.E295D	ENST00000317025	NM_023034.1	295	gaG/gaT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104654	69104654	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	121	660	0	ENST00000288368.4:c.4498A>G	p.Asn1500Asp	p.N1500D	ENST00000288368	NM_024870.2	1500	Aac/Gac																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864898	117864898	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1357605618		P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	116	406	0	ENST00000297338.2:c.1211G>A	p.Arg404Lys	p.R404K	ENST00000297338	NM_006265.2	404	aGg/aAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409816	139409816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	56	1036	1	ENST00000277541.6:c.1940G>A	p.Ser647Asn	p.S647N	ENST00000277541	NM_017617.3	647	aGc/aAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76937221	76937221	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	71	521	1	ENST00000373344.5:c.3527del	p.Lys1176ArgfsTer14	p.K1176Rfs*14	ENST00000373344	NM_000489.3	1176	aAg/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0039478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	264	737	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517201		P-0039478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	542	595	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781388	3781388	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	53	793	0	ENST00000262367.5:c.4977C>A	p.Asp1659Glu	p.D1659E	ENST00000262367	NM_004380.2	1659	gaC/gaA																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610163	10610163	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	118	744	0	ENST00000171111.5:c.547A>G	p.Asn183Asp	p.N183D	ENST00000171111	NM_203500.1	183	Aat/Gat																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101179	41101179	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770753852		P-0040127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	138	752	0	ENST00000373198.4:c.1177G>A	p.Val393Met	p.V393M	ENST00000373198	NM_133170.3	393	Gtg/Atg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39233628	39233628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	36	622	0	ENST00000402219.2:c.2716G>A	p.Glu906Lys	p.E906K	ENST00000402219	NM_005633.3	906	Gaa/Aaa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39233637	39233637	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	37	586	0	ENST00000402219.2:c.2707G>C	p.Glu903Gln	p.E903Q	ENST00000402219	NM_005633.3	903	Gaa/Caa																																																																															
MET	4233	MSKCC	GRCh37	7	116411881	116411882	+	intron_variant	Intron	INS	-	-	TAGA			P-0040127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	498	912	0	ENST00000397752.3:c.2888-21_2888-20insAGAT		p.*963*	ENST00000397752	NM_000245.2																																																																																	
CSDE1	7812	MSKCC	GRCh37	1	115280598	115280598	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	170	328	0	ENST00000438362.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000438362	NM_001242891.1	145	Cga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255206	16255206	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780359509		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	248	460	0	ENST00000375759.3:c.2471G>A	p.Arg824His	p.R824H	ENST00000375759	NM_015001.2	824	cGc/cAc																																																																															
SDHB	6390	MSKCC	GRCh37	1	17359573	17359573	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs74315366		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	219	327	0	ENST00000375499.3:c.268C>T	p.Arg90Ter	p.R90*	ENST00000375499	NM_003000.2	90	Cga/Tga																																																																															
CDC73	79577	MSKCC	GRCh37	1	193099338	193099338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	154	316	0	ENST00000367435.3:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000367435	NM_024529.4	91	cGa/cAa																																																																															
IL10	3586	MSKCC	GRCh37	1	206945700	206945700	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	230	476	0	ENST00000423557.1:c.81G>T	p.Glu27Asp	p.E27D	ENST00000423557	NM_000572.2	27	gaG/gaT																																																																															
PARP1	142	MSKCC	GRCh37	1	226590039	226590039	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	215	418	0	ENST00000366794.5:c.162C>A	p.Phe54Leu	p.F54L	ENST00000366794	NM_001618.3	54	ttC/ttA																																																																															
FH	2271	MSKCC	GRCh37	1	241680489	241680489	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200007371		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	157	305	0	ENST00000366560.3:c.260G>A	p.Arg87His	p.R87H	ENST00000366560	NM_000143.3	87	cGc/cAc																																																																															
MPL	4352	MSKCC	GRCh37	1	43804359	43804359	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749391587		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	219	424	0	ENST00000372470.3:c.359G>A	p.Arg120Gln	p.R120Q	ENST00000372470	NM_005373.2	120	cGg/cAg																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733527	85733527	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200837308		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	224	399	0	ENST00000370580.1:c.485C>T	p.Thr162Met	p.T162M	ENST00000370580	NM_003921.4	162	aCg/aTg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775719	9775719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	243	442	0	ENST00000377346.4:c.262C>T	p.Arg88Cys	p.R88C	ENST00000377346	NM_005026.3	88	Cgt/Tgt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777159	9777159	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749687214		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	241	439	0	ENST00000377346.4:c.923C>T	p.Ala308Val	p.A308V	ENST00000377346	NM_005026.3	308	gCg/gTg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784400	9784400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	231	418	0	ENST00000377346.4:c.2785C>T	p.Arg929Cys	p.R929C	ENST00000377346	NM_005026.3	929	Cgt/Tgt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710666	114710666	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	194	413	0	ENST00000543371.1:c.151G>T	p.Glu51Ter	p.E51*	ENST00000543371	NM_001198531.1	51	Gaa/Taa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274753	123274753	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781714766		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	239	404	0	ENST00000358487.5:c.1165G>A	p.Ala389Thr	p.A389T	ENST00000358487	NM_000141.4	389	Gcc/Acc																																																																															
RET	5979	MSKCC	GRCh37	10	43623572	43623572	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760625882		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	200	359	0	ENST00000355710.3:c.3200C>T	p.Pro1067Leu	p.P1067L	ENST00000355710	NM_020975.4	1067	cCg/cTg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63699963	63699963	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1423129750		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	231	336	0	ENST00000279873.7:c.298G>A	p.Glu100Lys	p.E100K	ENST00000279873	NM_032199.2	100	Gaa/Aaa																																																																															
TET1	80312	MSKCC	GRCh37	10	70333143	70333143	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767493807		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	222	443	0	ENST00000373644.4:c.1048G>A	p.Glu350Lys	p.E350K	ENST00000373644	NM_030625.2	350	Gaa/Aaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685311	89685311	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	90	230	0	ENST00000371953.3:c.206A>C	p.Asn69Thr	p.N69T	ENST00000371953	NM_000314.4	69	aAt/aCt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720683	89720683	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	56	86	0	ENST00000371953.3:c.834C>A	p.Phe278Leu	p.F278L	ENST00000371953	NM_000314.4	278	ttC/ttA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720853	89720853	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1085308040		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	73	123	0	ENST00000371953.3:c.1004G>A	p.Arg335Gln	p.R335Q	ENST00000371953	NM_000314.4	335	cGa/cAa																																																																															
PGR	5241	MSKCC	GRCh37	11	100922251	100922251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	116	288	1	ENST00000325455.5:c.2261C>A	p.Ser754Tyr	p.S754Y	ENST00000325455	NM_001202474.3	754	tCt/tAt																																																																															
PGR	5241	MSKCC	GRCh37	11	100962554	100962554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	151	251	0	ENST00000325455.5:c.1843C>T	p.Arg615Cys	p.R615C	ENST00000325455	NM_001202474.3	615	Cgc/Tgc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998700	100998700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	228	446	0	ENST00000325455.5:c.1102G>A	p.Glu368Lys	p.E368K	ENST00000325455	NM_001202474.3	368	Gag/Aag																																																																															
CTR9	9646	MSKCC	GRCh37	11	10789627	10789627	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751781919		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	234	412	0	ENST00000361367.2:c.1879C>T	p.Arg627Cys	p.R627C	ENST00000361367	NM_014633.3	627	Cgt/Tgt																																																																															
CTR9	9646	MSKCC	GRCh37	11	10789919	10789919	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1391585643		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	140	318	0	ENST00000361367.2:c.1990C>T	p.Arg664Cys	p.R664C	ENST00000361367	NM_014633.3	664	Cgt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs772821016		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	153	352	0	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108115681	108115681	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs876660933		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	123	342	0	ENST00000278616.4:c.829G>T	p.Glu277Ter	p.E277*	ENST00000278616	NM_000051.3	277	Gaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108141997	108141997	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587780619		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	169	295	0	ENST00000278616.4:c.2941C>T	p.Arg981Cys	p.R981C	ENST00000278616	NM_000051.3	981	Cgt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108143551	108143551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201780199		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	178	318	0	ENST00000278616.4:c.3256C>T	p.Arg1086Cys	p.R1086C	ENST00000278616	NM_000051.3	1086	Cgc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108205756	108205756	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs531980488		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	168	262	0	ENST00000278616.4:c.8071C>T	p.Arg2691Cys	p.R2691C	ENST00000278616	NM_000051.3	2691	Cgc/Tgc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376934	118376934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201345346		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	263	429	0	ENST00000534358.1:c.10327G>A	p.Ala3443Thr	p.A3443T	ENST00000534358	NM_005933.3	3443	Gct/Act																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741546	17741546	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	186	349	0	ENST00000250003.3:c.217C>A	p.Pro73Thr	p.P73T	ENST00000250003	NM_002478.4	73	Ccg/Acg																																																																															
CCND1	595	MSKCC	GRCh37	11	69466033	69466033	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1292246537		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	211	409	0	ENST00000227507.2:c.871C>T	p.Arg291Trp	p.R291W	ENST00000227507	NM_053056.2	291	Cgg/Tgg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940586	71940586	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1255360958		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	254	498	0	ENST00000298229.2:c.737G>A	p.Arg246His	p.R246H	ENST00000298229	NM_001567.3	246	cGc/cAc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94917655	94917655	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746291519		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	171	414	0	ENST00000536441.1:c.866G>A	p.Arg289His	p.R289H	ENST00000536441	NM_144665.3	289	cGt/cAt																																																																															
RAD52	5893	MSKCC	GRCh37	12	1040408	1040408	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370272002		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	165	365	0	ENST00000358495.3:c.164G>A	p.Arg55His	p.R55H	ENST00000358495	NM_134424.2	55	cGc/cAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120675	115120675	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	262	467	0	ENST00000257566.3:c.331G>T	p.Glu111Ter	p.E111*	ENST00000257566	NM_016569.3	111	Gaa/Taa																																																																															
SETD8	387893	MSKCC	GRCh37	12	123875282	123875282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	77	151	0	ENST00000330479.4:c.238G>A	p.Glu80Lys	p.E80K	ENST00000330479	NM_020382.3	80	Gaa/Aaa																																																																															
SETD8	387893	MSKCC	GRCh37	12	123879614	123879614	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758323252		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	165	235	0	ENST00000330479.4:c.310G>A	p.Ala104Thr	p.A104T	ENST00000330479	NM_020382.3	104	Gca/Aca																																																																															
POLE	5426	MSKCC	GRCh37	12	133252327	133252327	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	197	355	0	ENST00000320574.5:c.1100T>C	p.Phe367Ser	p.F367S	ENST00000320574	NM_006231.2	367	tTt/tCt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435082	18435082	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	165	323	0	ENST00000266497.5:c.67G>T	p.Glu23Ter	p.E23*	ENST00000266497		23	Gaa/Taa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435088	18435088	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs777959749		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	197	334	0	ENST00000266497.5:c.73C>A	p.Leu25Ile	p.L25I	ENST00000266497		25	Ctc/Atc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793432	18793432	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187869576		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	136	311	0	ENST00000266497.5:c.4129C>T	p.Arg1377Cys	p.R1377C	ENST00000266497		1377	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	88	273	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
CCND2	894	MSKCC	GRCh37	12	4398043	4398043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	197	379	0	ENST00000261254.3:c.607G>A	p.Ala203Thr	p.A203T	ENST00000261254	NM_001759.3	203	Gca/Aca																																																																															
KDM5A	5927	MSKCC	GRCh37	12	459809	459809	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	153	364	0	ENST00000399788.2:c.1286G>T	p.Arg429Ile	p.R429I	ENST00000399788	NM_001042603.1	429	aGa/aTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420214	49420214	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs794727688		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	239	445	1	ENST00000301067.7:c.15535C>T	p.Arg5179Cys	p.R5179C	ENST00000301067	NM_003482.3	5179	Cgt/Tgt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435297	110435297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	226	530	0	ENST00000375856.3:c.3104C>T	p.Pro1035Leu	p.P1035L	ENST00000375856	NM_003749.2	1035	cCg/cTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436309	110436309	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766098208		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	191	501	0	ENST00000375856.3:c.2092G>A	p.Ala698Thr	p.A698T	ENST00000375856	NM_003749.2	698	Gcc/Acc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549116	21549116	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	221	425	0	ENST00000382592.4:c.3160C>T	p.Arg1054Ter	p.R1054*	ENST00000382592	NM_014572.2	1054	Cga/Tga																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562756	21562756	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs12867400		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	211	443	0	ENST00000382592.4:c.1163C>T	p.Ala388Val	p.A388V	ENST00000382592	NM_014572.2	388	gCg/gTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041065	29041065	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	175	288	0	ENST00000282397.4:c.363A>C	p.Glu121Asp	p.E121D	ENST00000282397	NM_002019.4	121	gaA/gaC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900639	32900639	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41293469		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	126	288	0	ENST00000380152.3:c.520C>T	p.Arg174Cys	p.R174C	ENST00000380152		174	Cgt/Tgt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929324	32929324	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	158	328	1	ENST00000380152.3:c.7334G>T	p.Ser2445Ile	p.S2445I	ENST00000380152		2445	aGt/aTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48881438	48881438	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	137	276	0	ENST00000267163.4:c.160G>T	p.Glu54Ter	p.E54*	ENST00000267163	NM_000321.2	54	Gaa/Taa																																																																															
RB1	5925	MSKCC	GRCh37	13	48954199	48954199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	118	160	0	ENST00000267163.4:c.1400G>A	p.Arg467Gln	p.R467Q	ENST00000267163	NM_000321.2	467	cGa/cAa																																																																															
RB1	5925	MSKCC	GRCh37	13	49039374	49039374	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137853293		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	241	389	0	ENST00000267163.4:c.2359C>T	p.Arg787Ter	p.R787*	ENST00000267163	NM_000321.2	787	Cga/Tga																																																																															
RB1	5925	MSKCC	GRCh37	13	49039501	49039501	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	190	291	0	ENST00000267163.4:c.2486C>A	p.Ser829Ter	p.S829*	ENST00000267163	NM_000321.2	829	tCa/tAa																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281768	49281768	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148425155		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	229	389	0	ENST00000282018.3:c.815C>T	p.Thr272Met	p.T272M	ENST00000282018	NM_020377.2	272	aCg/aTg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73347916	73347916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139907646		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	150	329	0	ENST00000377767.4:c.1145G>A	p.Arg382Gln	p.R382Q	ENST00000377767	NM_014953.3	382	cGa/cAa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73349471	73349471	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777245855		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	128	335	0	ENST00000377767.4:c.865G>A	p.Glu289Lys	p.E289K	ENST00000377767	NM_014953.3	289	Gaa/Aaa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73351583	73351583	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372045592		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	197	362	0	ENST00000377767.4:c.629G>A	p.Arg210His	p.R210H	ENST00000377767	NM_014953.3	210	cGt/cAt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30194805	30194805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	222	419	0	ENST00000331968.5:c.340C>T	p.Leu114Phe	p.L114F	ENST00000331968	NM_002742.2	114	Ctt/Ttt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988222	36988222	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	169	335	0	ENST00000354822.5:c.431A>G	p.Tyr144Cys	p.Y144C	ENST00000354822	NM_001079668.2	144	tAc/tGc																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023238	33023238	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756849803		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	270	457	0	ENST00000300177.4:c.347G>A	p.Arg116His	p.R116H	ENST00000300177	NM_001191322.1	116	cGc/cAc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643801	38643801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	220	404	0	ENST00000299084.4:c.1271G>A	p.Arg424Lys	p.R424K	ENST00000299084	NM_152594.2	424	aGa/aAa																																																																															
MGA	23269	MSKCC	GRCh37	15	41988910	41988910	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1422434612		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	219	420	0	ENST00000219905.7:c.1702G>A	p.Asp568Asn	p.D568N	ENST00000219905	NM_001164273.1	568	Gat/Aat																																																																															
MGA	23269	MSKCC	GRCh37	15	42000305	42000305	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1272090898		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	142	282	0	ENST00000219905.7:c.2324C>T	p.Ala775Val	p.A775V	ENST00000219905	NM_001164273.1	775	gCg/gTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42040904	42040904	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764392749		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	235	372	1	ENST00000219905.7:c.5282G>A	p.Arg1761Gln	p.R1761Q	ENST00000219905	NM_001164273.1	1761	cGa/cAa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43767762	43767762	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	226	400	0	ENST00000382044.4:c.1085+1G>A		p.X362_splice	ENST00000382044	NM_001141980.1	362																																																																																
B2M	567	MSKCC	GRCh37	15	45007688	45007688	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	188	420	0	ENST00000558401.1:c.135C>A	p.Cys45Ter	p.C45*	ENST00000558401	NM_004048.2	45	tgC/tgA																																																																															
USP8	9101	MSKCC	GRCh37	15	50773906	50773906	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs942688916		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	226	440	0	ENST00000307179.4:c.1447C>T	p.Arg483Trp	p.R483W	ENST00000307179		483	Cgg/Tgg																																																																															
USP8	9101	MSKCC	GRCh37	15	50785083	50785083	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753936051		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	121	215	0	ENST00000307179.4:c.2420G>A	p.Arg807Gln	p.R807Q	ENST00000307179		807	cGa/cAa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729222	66729222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	226	441	0	ENST00000307102.5:c.430G>A	p.Glu144Lys	p.E144K	ENST00000307102	NM_002755.3	144	Gag/Aag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483904	88483904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371770675		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	194	400	0	ENST00000360948.2:c.1666G>A	p.Glu556Lys	p.E556K	ENST00000360948	NM_001012338.2	556	Gag/Aag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483927	88483927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	203	411	0	ENST00000360948.2:c.1643C>T	p.Ala548Val	p.A548V	ENST00000360948	NM_001012338.2	548	gCc/gTc																																																																															
BLM	641	MSKCC	GRCh37	15	91292892	91292892	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765089689		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	230	418	2	ENST00000355112.3:c.394C>T	p.Arg132Trp	p.R132W	ENST00000355112	NM_000057.2	132	Cgg/Tgg																																																																															
BLM	641	MSKCC	GRCh37	15	91358483	91358483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	151	291	0	ENST00000355112.3:c.4228C>A	p.Leu1410Ile	p.L1410I	ENST00000355112	NM_000057.2	1410	Ctt/Att																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467863	99467863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	247	370	0	ENST00000268035.6:c.2732C>T	p.Ser911Phe	p.S911F	ENST00000268035	NM_000875.3	911	tCt/tTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273878	10273878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	165	407	0	ENST00000330684.3:c.391G>A	p.Ala131Thr	p.A131T	ENST00000330684	NM_001134407.1	131	Gca/Aca																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786128	3786128	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	229	377	0	ENST00000262367.5:c.4637C>A	p.Pro1546His	p.P1546H	ENST00000262367	NM_004380.2	1546	cCc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828264	72828264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	241	498	0	ENST00000268489.5:c.8317C>A	p.Leu2773Ile	p.L2773I	ENST00000268489	NM_006885.3	2773	Cta/Ata																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828390	72828390	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752003949		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	275	453	1	ENST00000268489.5:c.8191C>T	p.Arg2731Trp	p.R2731W	ENST00000268489	NM_006885.3	2731	Cgg/Tgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829404	72829404	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200268844		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	250	423	0	ENST00000268489.5:c.7177G>A	p.Ala2393Thr	p.A2393T	ENST00000268489	NM_006885.3	2393	Gcc/Acc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81819709	81819709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	265	438	1	ENST00000359376.3:c.115G>A	p.Glu39Lys	p.E39K	ENST00000359376	NM_002661.3	39	Gag/Aag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81888069	81888069	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	169	326	0	ENST00000359376.3:c.214G>T	p.Glu72Ter	p.E72*	ENST00000359376	NM_002661.3	72	Gaa/Taa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942036	81942036	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	195	407	0	ENST00000359376.3:c.1573G>T	p.Glu525Ter	p.E525*	ENST00000359376	NM_002661.3	525	Gaa/Taa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89352533	89352533	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771447879		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	183	397	0	ENST00000301030.4:c.806C>T	p.Thr269Met	p.T269M	ENST00000301030	NM_001256183.1	269	aCg/aTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857379	9857380	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	182	427	0	ENST00000330684.3:c.4021dup	p.Ser1341LysfsTer25	p.S1341Kfs*25	ENST00000330684	NM_001134407.1	1341	agc/aAgc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9928005	9928005	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	187	355	0	ENST00000330684.3:c.1734C>A	p.Tyr578Ter	p.Y578*	ENST00000330684	NM_001134407.1	578	taC/taA																																																																															
NF1	4763	MSKCC	GRCh37	17	29592269	29592269	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	142	256	0	ENST00000358273.4:c.4747G>T	p.Glu1583Ter	p.E1583*	ENST00000358273	NM_001042492.2	1583	Gaa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786202457		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	166	385	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	244	428	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
TP53	7157	MSKCC	GRCh37	17	7573969	7573969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	191	324	0	ENST00000269305.4:c.1058C>T	p.Ala353Val	p.A353V	ENST00000269305	NM_001126112.2	353	gCc/gTc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78936305	78936305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	216	456	0	ENST00000306801.3:c.3737C>T	p.Ser1246Leu	p.S1246L	ENST00000306801	NM_020761.2	1246	tCg/tTg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39570513	39570514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	103	267	0	ENST00000262039.4:c.713dup	p.Asp239GlyfsTer3	p.D239Gfs*3	ENST00000262039	NM_002647.2	237	gaa/gAaa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372044	45372044	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	175	343	0	ENST00000262160.6:c.1125A>C	p.Lys375Asn	p.K375N	ENST00000262160	NM_005901.5	375	aaA/aaC																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395628	45395628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	155	270	0	ENST00000262160.6:c.506G>T	p.Arg169Ile	p.R169I	ENST00000262160	NM_005901.5	169	aGa/aTa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56348505	56348505	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	405	377	0	ENST00000348428.3:c.313G>T	p.Glu105Ter	p.E105*	ENST00000348428	NM_006785.3	105	Gaa/Taa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152033	11152033	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1384070535		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	226	383	0	ENST00000344626.4:c.4221G>T	p.Lys1407Asn	p.K1407N	ENST00000344626	NM_003072.3	1407	aaG/aaT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170552	11170552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	236	445	0	ENST00000344626.4:c.4759G>A	p.Glu1587Lys	p.E1587K	ENST00000344626	NM_003072.3	1587	Gaa/Aaa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271691	15271691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	252	521	0	ENST00000263388.2:c.6748G>A	p.Glu2250Lys	p.E2250K	ENST00000263388	NM_000435.2	2250	Gaa/Aaa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271990	15271990	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758243307		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	200	440	0	ENST00000263388.2:c.6449G>A	p.Arg2150His	p.R2150H	ENST00000263388	NM_000435.2	2150	cGc/cAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299887	15299887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	220	450	0	ENST00000263388.2:c.1291G>A	p.Asp431Asn	p.D431N	ENST00000263388	NM_000435.2	431	Gat/Aat																																																																															
UPF1	5976	MSKCC	GRCh37	19	18966023	18966023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	214	352	0	ENST00000262803.5:c.1516G>A	p.Val506Ile	p.V506I	ENST00000262803	NM_002911.3	506	Gtc/Atc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2206785	2206785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	199	354	0	ENST00000398665.3:c.845G>A	p.Arg282Lys	p.R282K	ENST00000398665	NM_032482.2	282	aGa/aAa																																																																															
CD79A	973	MSKCC	GRCh37	19	42383653	42383653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	272	454	0	ENST00000221972.3:c.428G>A	p.Arg143Gln	p.R143Q	ENST00000221972	NM_021601.3	143	cGa/cAa																																																																															
ERF	2077	MSKCC	GRCh37	19	42752763	42752763	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760204780		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	226	432	0	ENST00000222329.4:c.1501G>A	p.Ala501Thr	p.A501T	ENST00000222329	NM_006494.2	501	Gct/Act																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910589	50910589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	222	382	0	ENST00000440232.2:c.1692G>A	p.Met564Ile	p.M564I	ENST00000440232	NM_002691.3	564	atG/atA																																																																															
POLD1	5424	MSKCC	GRCh37	19	50916701	50916701	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs878854532		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	243	392	0	ENST00000440232.2:c.2173C>T	p.Arg725Cys	p.R725C	ENST00000440232	NM_002691.3	725	Cgt/Tgt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52705261	52705261	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770424653		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	207	384	0	ENST00000322088.6:c.143G>A	p.Arg48Gln	p.R48Q	ENST00000322088	NM_014225.5	48	cGa/cAa																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714699	52714699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1359743267		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	235	425	0	ENST00000322088.6:c.457G>A	p.Val153Ile	p.V153I	ENST00000322088	NM_014225.5	153	Gtc/Atc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128015258	128015258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115312738		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	197	295	0	ENST00000285398.2:c.2263G>A	p.Asp755Asn	p.D755N	ENST00000285398	NM_000122.1	755	Gac/Aac																																																																															
PMS1	5378	MSKCC	GRCh37	2	190738359	190738359	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143554211		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	195	304	0	ENST00000441310.2:c.2611C>T	p.Arg871Cys	p.R871C	ENST00000441310	NM_000534.4	871	Cgc/Tgc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190742010	190742010	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142159998		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	140	321	0	ENST00000441310.2:c.2647C>T	p.Arg883Cys	p.R883C	ENST00000441310	NM_000534.4	883	Cgt/Tgt																																																																															
CASP8	841	MSKCC	GRCh37	2	202149974	202149974	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1301592633		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	279	505	0	ENST00000358485.4:c.1415G>A	p.Arg472Gln	p.R472Q	ENST00000358485	NM_001080125.1	472	cGa/cAa																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735359	204735359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	231	457	1	ENST00000302823.3:c.160G>A	p.Ala54Thr	p.A54T	ENST00000302823	NM_005214.4	54	Gcc/Acc																																																																															
IDH1	3417	MSKCC	GRCh37	2	209108313	209108313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	147	361	0	ENST00000345146.2:c.536C>T	p.Ala179Val	p.A179V	ENST00000345146	NM_005896.2	179	gCc/gTc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212286805	212286805	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	135	295	0	ENST00000342788.4:c.2891G>T	p.Arg964Ile	p.R964I	ENST00000342788	NM_005235.2	964	aGa/aTa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295801	212295801	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1423325504		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	153	366	0	ENST00000342788.4:c.2512C>T	p.Arg838Ter	p.R838*	ENST00000342788	NM_005235.2	838	Cga/Tga																																																																															
CUL3	8452	MSKCC	GRCh37	2	225342967	225342967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	163	328	0	ENST00000264414.4:c.2125C>T	p.Arg709Trp	p.R709W	ENST00000264414	NM_003590.4	709	Cgg/Tgg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225370822	225370822	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1265558901		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	109	289	0	ENST00000264414.4:c.1057G>A	p.Asp353Asn	p.D353N	ENST00000264414	NM_003590.4	353	Gat/Aat																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662128	227662128	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775603579		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	209	471	0	ENST00000305123.5:c.1327C>T	p.Arg443Cys	p.R443C	ENST00000305123	NM_005544.2	443	Cgc/Tgc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663425	227663425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	164	345	0	ENST00000305123.5:c.30C>A	p.Phe10Leu	p.F10L	ENST00000305123	NM_005544.2	10	ttC/ttA																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25976476	25976476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	160	284	0	ENST00000435504.4:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000435504		357	Cga/Tga																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068357	26068357	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	103	212	0	ENST00000435504.4:c.133G>T	p.Glu45Ter	p.E45*	ENST00000435504		45	Gaa/Taa																																																																															
ALK	238	MSKCC	GRCh37	2	29446209	29446209	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs774951734		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	225	399	1	ENST00000389048.3:c.3358C>T	p.Arg1120Trp	p.R1120W	ENST00000389048	NM_004304.4	1120	Cgg/Tgg																																																																															
ALK	238	MSKCC	GRCh37	2	29940449	29940449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375097381		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	178	297	0	ENST00000389048.3:c.782G>A	p.Arg261Gln	p.R261Q	ENST00000389048	NM_004304.4	261	cGa/cAa																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46583923	46583923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	169	339	0	ENST00000263734.3:c.430C>T	p.Arg144Cys	p.R144C	ENST00000263734	NM_001430.4	144	Cgt/Tgt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	224	456	7	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																															
XPO1	7514	MSKCC	GRCh37	2	61715319	61715319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	119	303	0	ENST00000401558.2:c.2294G>A	p.Arg765Gln	p.R765Q	ENST00000401558	NM_003400.3	765	cGa/cAa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61753652	61753652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	121	240	0	ENST00000401558.2:c.131G>T	p.Arg44Ile	p.R44I	ENST00000401558	NM_003400.3	44	aGa/aTa																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67632300	67632300	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	123	356	0	ENST00000272342.5:c.2486C>A	p.Ser829Tyr	p.S829Y	ENST00000272342	NM_019002.3	829	tCt/tAt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99155388	99155388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1465343631		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	187	381	0	ENST00000074304.5:c.614C>T	p.Ala205Val	p.A205V	ENST00000074304	NM_001134224.1	205	gCg/gTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40747075	40747075	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199637632		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	172	348	0	ENST00000373198.4:c.3007G>A	p.Val1003Ile	p.V1003I	ENST00000373198	NM_133170.3	1003	Gtc/Atc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40747137	40747137	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752831315		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	162	370	0	ENST00000373198.4:c.2945C>T	p.Pro982Leu	p.P982L	ENST00000373198	NM_133170.3	982	cCg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41400169	41400169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	205	336	0	ENST00000373198.4:c.590G>A	p.Arg197Gln	p.R197Q	ENST00000373198	NM_133170.3	197	cGa/cAa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546626	9546626	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751328296		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	216	440	0	ENST00000353224.5:c.1396G>A	p.Ala466Thr	p.A466T	ENST00000353224	NM_177990.2	466	Gcc/Acc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546829	9546829	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	213	445	0	ENST00000353224.5:c.1193C>A	p.Ala398Asp	p.A398D	ENST00000353224	NM_177990.2	398	gCt/gAt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171607	36171607	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	227	378	0	ENST00000300305.3:c.958C>T	p.Arg320Ter	p.R320*	ENST00000300305		320	Cga/Tga																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44514831	44514831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	244	418	0	ENST00000291552.4:c.416C>T	p.Pro139Leu	p.P139L	ENST00000291552	NM_006758.2	139	cCg/cTg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119585438	119585438	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1174225568		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	115	268	0	ENST00000316626.5:c.947G>A	p.Arg316Gln	p.R316Q	ENST00000316626		316	cGg/cAg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12627233	12627233	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs941573221		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	185	329	0	ENST00000251849.4:c.1483C>T	p.Arg495Cys	p.R495C	ENST00000251849	NM_002880.3	495	Cgc/Tgc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12633244	12633244	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	210	366	0	ENST00000251849.4:c.1156C>T	p.Gln386Ter	p.Q386*	ENST00000251849	NM_002880.3	386	Caa/Taa																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204788	128204788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	216	391	0	ENST00000341105.2:c.653C>T	p.Thr218Met	p.T218M	ENST00000341105	NM_032638.4	218	aCg/aTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873118	134873118	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	160	354	0	ENST00000398015.3:c.1422G>T	p.Lys474Asn	p.K474N	ENST00000398015	NM_004441.4	474	aaG/aaT																																																																															
ATR	545	MSKCC	GRCh37	3	142268448	142268448	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs564283952		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	153	320	0	ENST00000350721.4:c.3044G>A	p.Arg1015Gln	p.R1015Q	ENST00000350721	NM_001184.3	1015	cGa/cAa																																																																															
ATR	545	MSKCC	GRCh37	3	142269071	142269071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753553510		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	189	330	0	ENST00000350721.4:c.2879G>A	p.Arg960Gln	p.R960Q	ENST00000350721	NM_001184.3	960	cGa/cAa																																																																															
ATR	545	MSKCC	GRCh37	3	142281484	142281484	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	169	375	0	ENST00000350721.4:c.760G>T	p.Glu254Ter	p.E254*	ENST00000350721	NM_001184.3	254	Gaa/Taa																																																																															
ATR	545	MSKCC	GRCh37	3	142281952	142281952	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	107	261	0	ENST00000350721.4:c.293-1G>T		p.X98_splice	ENST00000350721	NM_001184.3	98																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	189	358	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913283		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	171	359	0	ENST00000263967.3:c.3129G>T	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atT																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430936	181430936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	203	501	0	ENST00000325404.1:c.788C>T	p.Ala263Val	p.A263V	ENST00000325404	NM_003106.3	263	gCg/gTg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504010	186504010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	182	349	0	ENST00000323963.5:c.575G>A	p.Gly192Asp	p.G192D	ENST00000323963		192	gGt/gAt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37058999	37058999	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs63751194		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	191	348	0	ENST00000231790.2:c.793C>T	p.Arg265Cys	p.R265C	ENST00000231790	NM_000249.3	265	Cgt/Tgt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103717	47103717	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1205330893		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	247	415	0	ENST00000409792.3:c.6229C>T	p.Arg2077Ter	p.R2077*	ENST00000409792	NM_014159.6	2077	Cga/Tga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47127780	47127780	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	223	377	2	ENST00000409792.3:c.5302A>G	p.Lys1768Glu	p.K1768E	ENST00000409792	NM_014159.6	1768	Aag/Gag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147573	47147573	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1359363019		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	249	487	2	ENST00000409792.3:c.4753G>A	p.Asp1585Asn	p.D1585N	ENST00000409792	NM_014159.6	1585	Gat/Aat																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637690	52637690	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1239654517		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	172	317	0	ENST00000394830.3:c.2626C>T	p.Arg876Cys	p.R876C	ENST00000394830	NM_018313.4	876	Cgt/Tgt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021828	71021828	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	174	329	0	ENST00000318789.4:c.1531-1G>A		p.X511_splice	ENST00000318789	NM_032682.5	511																																																																																
FOXP1	27086	MSKCC	GRCh37	3	71026136	71026136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	166	305	0	ENST00000318789.4:c.1486A>G	p.Thr496Ala	p.T496A	ENST00000318789	NM_032682.5	496	Aca/Gca																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445041	89445041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	220	402	0	ENST00000336596.2:c.1361C>A	p.Ser454Tyr	p.S454Y	ENST00000336596	NM_005233.5	454	tCt/tAt																																																																															
TET2	54790	MSKCC	GRCh37	4	106157146	106157146	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	252	428	0	ENST00000380013.4:c.2047T>G	p.Phe683Val	p.F683V	ENST00000380013	NM_001127208.2	683	Ttt/Gtt																																																																															
TET2	54790	MSKCC	GRCh37	4	106157424	106157424	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	210	426	0	ENST00000380013.4:c.2325C>A	p.Phe775Leu	p.F775L	ENST00000380013	NM_001127208.2	775	ttC/ttA																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143130163	143130163	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	128	273	0	ENST00000262992.4:c.853G>T	p.Glu285Ter	p.E285*	ENST00000262992	NM_001101669.1	285	Gaa/Taa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524678	187524678	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769237577		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	252	439	0	ENST00000441802.2:c.11002C>T	p.Arg3668Trp	p.R3668W	ENST00000441802	NM_005245.3	3668	Cgg/Tgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534269	187534269	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1401735284		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	217	362	0	ENST00000441802.2:c.9457G>A	p.Asp3153Asn	p.D3153N	ENST00000441802	NM_005245.3	3153	Gac/Aac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542860	187542860	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767331775		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	190	353	0	ENST00000441802.2:c.4880G>A	p.Arg1627Gln	p.R1627Q	ENST00000441802	NM_005245.3	1627	cGa/cAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557284	187557284	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	238	463	0	ENST00000441802.2:c.4078G>T	p.Glu1360Ter	p.E1360*	ENST00000441802	NM_005245.3	1360	Gaa/Taa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133483	55133483	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	185	331	0	ENST00000257290.5:c.787G>T	p.Glu263Ter	p.E263*	ENST00000257290	NM_006206.4	263	Gaa/Taa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144610	55144610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	180	357	0	ENST00000257290.5:c.2084G>T	p.Ser695Ile	p.S695I	ENST00000257290	NM_006206.4	695	aGc/aTc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161380	55161380	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376544204		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	223	405	0	ENST00000257290.5:c.3211G>A	p.Asp1071Asn	p.D1071N	ENST00000257290	NM_006206.4	1071	Gac/Aac																																																																															
KIT	3815	MSKCC	GRCh37	4	55599269	55599269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	152	318	0	ENST00000288135.5:c.2395C>A	p.Leu799Ile	p.L799I	ENST00000288135	NM_000222.2	799	Ctc/Atc																																																																															
KIT	3815	MSKCC	GRCh37	4	55599328	55599328	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	130	343	0	ENST00000288135.5:c.2454G>T	p.Lys818Asn	p.K818N	ENST00000288135	NM_000222.2	818	aaG/aaT																																																																															
KDR	3791	MSKCC	GRCh37	4	55956220	55956220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1190050670		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	184	316	1	ENST00000263923.4:c.3095G>A	p.Arg1032Gln	p.R1032Q	ENST00000263923	NM_002253.2	1032	cGa/cAa																																																																															
REST	5978	MSKCC	GRCh37	4	57796501	57796501	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs749881609		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	170	425	0	ENST00000309042.7:c.1477C>T	p.Arg493Ter	p.R493*	ENST00000309042	NM_005612.4	493	Cga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535355	66535355	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	201	386	0	ENST00000273854.3:c.106C>T	p.Arg36Ter	p.R36*	ENST00000273854	NM_004439.5	36	Cga/Tga																																																																															
ALB	213	MSKCC	GRCh37	4	74279174	74279174	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774294755		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	230	346	0	ENST00000295897.4:c.881C>T	p.Ser294Leu	p.S294L	ENST00000295897	NM_000477.5	294	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112173857	112173857	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs566005215		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	213	384	0	ENST00000257430.4:c.2566C>T	p.Arg856Cys	p.R856C	ENST00000257430	NM_000038.5	856	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	402	446	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174732	112174732	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	206	417	0	ENST00000257430.4:c.3441C>A	p.Tyr1147Ter	p.Y1147*	ENST00000257430	NM_000038.5	1147	taC/taA																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	201	409	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131923616	131923617	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	87	276	0	ENST00000265335.6:c.891dup	p.Gln298SerfsTer4	p.Q298Sfs*4	ENST00000265335		296	gtt/gTtt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562927	176562927	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs754265807		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	226	379	0	ENST00000439151.2:c.823A>C	p.Asn275His	p.N275H	ENST00000439151	NM_022455.4	275	Aat/Cat																																																																															
NSD1	64324	MSKCC	GRCh37	5	176662843	176662843	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1362208576		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	117	338	0	ENST00000439151.2:c.3818G>A	p.Arg1273His	p.R1273H	ENST00000439151	NM_022455.4	1273	cGc/cAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721024	176721024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	257	501	0	ENST00000439151.2:c.6655C>T	p.Arg2219Cys	p.R2219C	ENST00000439151	NM_022455.4	2219	Cgt/Tgt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046038	180046038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	207	362	0	ENST00000261937.6:c.2833G>A	p.Ala945Thr	p.A945T	ENST00000261937	NM_182925.4	945	Gcc/Acc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31410882	31410882	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs899896220		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	231	350	0	ENST00000344624.3:c.3638G>A	p.Arg1213His	p.R1213H	ENST00000344624		1213	cGc/cAc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31495424	31495424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	172	355	0	ENST00000344624.3:c.1724G>A	p.Arg575Gln	p.R575Q	ENST00000344624		575	cGg/cAg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38982057	38982057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	147	353	0	ENST00000357387.3:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000357387	NM_152756.3	222	cGa/cAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181765	56181765	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1287268127		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	264	253	0	ENST00000399503.3:c.3989C>T	p.Ser1330Leu	p.S1330L	ENST00000399503	NM_005921.1	1330	tCg/tTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184101	56184101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	169	324	0	ENST00000399503.3:c.4306G>A	p.Gly1436Ser	p.G1436S	ENST00000399503	NM_005921.1	1436	Ggc/Agc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522547	67522547	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	190	329	0	ENST00000274335.5:c.44A>C	p.Lys15Thr	p.K15T	ENST00000274335		15	aAa/aCa																																																																															
MSH3	4437	MSKCC	GRCh37	5	80040392	80040392	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776668872		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	145	260	0	ENST00000265081.6:c.1721G>A	p.Arg574Gln	p.R574Q	ENST00000265081	NM_002439.4	574	cGg/cAg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86628460	86628460	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	121	276	0	ENST00000274376.6:c.828+1G>A		p.X276_splice	ENST00000274376	NM_002890.2	276																																																																																
RASA1	5921	MSKCC	GRCh37	5	86668002	86668002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769775990		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	103	356	0	ENST00000274376.6:c.1766G>A	p.Arg589His	p.R589H	ENST00000274376	NM_002890.2	589	cGc/cAc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86670007	86670007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	107	218	0	ENST00000274376.6:c.1804G>A	p.Glu602Lys	p.E602K	ENST00000274376	NM_002890.2	602	Gaa/Aaa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675570	86675571	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	102	236	0	ENST00000274376.6:c.2513dup	p.Asn838LysfsTer2	p.N838Kfs*2	ENST00000274376	NM_002890.2	836	gaa/gAaa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117631331	117631331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	175	321	0	ENST00000368508.3:c.6347G>T	p.Arg2116Ile	p.R2116I	ENST00000368508	NM_002944.2	2116	aGa/aTa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117678991	117678991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	133	276	0	ENST00000368508.3:c.3830C>A	p.Ser1277Tyr	p.S1277Y	ENST00000368508	NM_002944.2	1277	tCt/tAt																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983275	149983275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	194	365	0	ENST00000253339.5:c.2983C>T	p.Arg995Cys	p.R995C	ENST00000253339		995	Cgc/Tgc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001395	150001395	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	159	382	0	ENST00000253339.5:c.2209C>T	p.Arg737Ter	p.R737*	ENST00000253339		737	Cga/Tga																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004834	150004834	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	243	432	0	ENST00000253339.5:c.1391C>A	p.Ser464Tyr	p.S464Y	ENST00000253339		464	tCt/tAt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289501	33289501	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1359646835		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	221	411	0	ENST00000374542.5:c.202G>A	p.Glu68Lys	p.E68K	ENST00000374542	NM_001141970.1	68	Gaa/Aaa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965620	93965620	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs964339668		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	183	398	0	ENST00000369303.4:c.2308C>T	p.Leu770Phe	p.L770F	ENST00000369303	NM_004440.3	770	Ctc/Ttc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979326	93979326	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	136	374	0	ENST00000369303.4:c.1502C>A	p.Ser501Tyr	p.S501Y	ENST00000369303	NM_004440.3	501	tCc/tAc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94067976	94067976	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	146	281	0	ENST00000369303.4:c.986C>T	p.Thr329Ile	p.T329I	ENST00000369303	NM_004440.3	329	aCa/aTa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508176	106508176	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752039271		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	206	392	0	ENST00000359195.3:c.170C>T	p.Ala57Val	p.A57V	ENST00000359195	NM_002649.2	57	gCg/gTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509729	106509729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	218	380	0	ENST00000359195.3:c.1723C>T	p.Leu575Phe	p.L575F	ENST00000359195	NM_002649.2	575	Ctc/Ttc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106515187	106515187	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	175	317	0	ENST00000359195.3:c.2330C>A	p.Ser777Tyr	p.S777Y	ENST00000359195	NM_002649.2	777	tCt/tAt																																																																															
MET	4233	MSKCC	GRCh37	7	116371827	116371827	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200740468		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	211	291	0	ENST00000397752.3:c.1306G>A	p.Glu436Lys	p.E436K	ENST00000397752	NM_000245.2	436	Gaa/Aaa																																																																															
MET	4233	MSKCC	GRCh37	7	116381005	116381005	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763991073		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	210	392	0	ENST00000397752.3:c.1627G>A	p.Asp543Asn	p.D543N	ENST00000397752	NM_000245.2	543	Gac/Aac																																																																															
MET	4233	MSKCC	GRCh37	7	116403116	116403116	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45440991		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	172	305	0	ENST00000397752.3:c.2377C>T	p.Arg793Cys	p.R793C	ENST00000397752	NM_000245.2	793	Cgc/Tgc																																																																															
MET	4233	MSKCC	GRCh37	7	116418997	116418997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	187	333	0	ENST00000397752.3:c.3508C>T	p.Arg1170Ter	p.R1170*	ENST00000397752	NM_000245.2	1170	Cga/Tga																																																																															
ETV1	2115	MSKCC	GRCh37	7	13978805	13978805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	171	333	0	ENST00000405192.2:c.302C>T	p.Ser101Phe	p.S101F	ENST00000405192	NM_001163147.1	101	tCt/tTt																																																																															
EZH2	2146	MSKCC	GRCh37	7	148513822	148513822	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201135441		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	208	312	0	ENST00000320356.2:c.1459G>A	p.Ala487Thr	p.A487T	ENST00000320356	NM_004456.4	487	Gct/Act																																																																															
EZH2	2146	MSKCC	GRCh37	7	148516750	148516750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	172	382	0	ENST00000320356.2:c.937C>T	p.Arg313Trp	p.R313W	ENST00000320356	NM_004456.4	313	Cgg/Tgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132768	152132768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	179	248	0	ENST00000262189.6:c.104G>T	p.Arg35Ile	p.R35I	ENST00000262189	NM_170606.2	35	aGa/aTa																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346219	152346220	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs764640893		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	188	397	4	ENST00000359321.1:c.350dup	p.Leu117PhefsTer6	p.L117Ffs*6	ENST00000359321	NM_005431.1	117	ttg/ttTg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739743	41739743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	201	392	0	ENST00000242208.4:c.230C>T	p.Pro77Leu	p.P77L	ENST00000242208	NM_002192.2	77	cCg/cTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268891	55268891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	229	467	0	ENST00000275493.2:c.2957G>T	p.Arg986Ile	p.R986I	ENST00000275493	NM_005228.3	986	aGa/aTa																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	182	365	2	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372301	55372301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	254	520	0	ENST00000297316.4:c.991G>A	p.Gly331Arg	p.G331R	ENST00000297316	NM_022454.3	331	Gga/Aga																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992692	68992692	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs529924687		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	136	310	1	ENST00000288368.4:c.1657G>A	p.Glu553Lys	p.E553K	ENST00000288368	NM_024870.2	553	Gaa/Aaa																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128230358	128230358	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	197	368	0	ENST00000265960.3:c.1238C>A	p.Pro413His	p.P413H	ENST00000265960	NM_001006617.1	413	cCt/cAt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772842	135772842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	212	400	0	ENST00000298552.3:c.2781G>T	p.Lys927Asn	p.K927N	ENST00000298552	NM_001162426.1	927	aaG/aaT																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396206	139396206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	222	415	0	ENST00000277541.6:c.5632G>A	p.Gly1878Arg	p.G1878R	ENST00000277541	NM_017617.3	1878	Ggg/Agg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400281	139400281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs864622727		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	197	379	2	ENST00000277541.6:c.4067G>A	p.Arg1356His	p.R1356H	ENST00000277541	NM_017617.3	1356	cGc/cAc																																																																															
TEK	7010	MSKCC	GRCh37	9	27168576	27168576	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs753021890		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	155	318	0	ENST00000380036.4:c.448G>T	p.Glu150Ter	p.E150*	ENST00000380036	NM_000459.3	150	Gaa/Taa																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882049	36882049	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs34810717		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	256	408	0	ENST00000358127.4:c.964G>A	p.Ala322Thr	p.A322T	ENST00000358127	NM_001280556.1	322	Gct/Act																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126757	5126757	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775495966		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	118	313	0	ENST00000381652.3:c.3365G>A	p.Arg1122Gln	p.R1122Q	ENST00000381652	NM_004972.3	1122	cGa/cAa																																																																															
CD274	29126	MSKCC	GRCh37	9	5457102	5457102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	193	347	0	ENST00000381577.3:c.76G>A	p.Asp26Asn	p.D26N	ENST00000381577	NM_014143.3	26	Gac/Aac																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5534946	5534946	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762936264		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	233	506	0	ENST00000397747.3:c.257C>T	p.Ser86Leu	p.S86L	ENST00000397747	NM_025239.3	86	tCg/tTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8375954	8375954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	209	371	0	ENST00000356435.5:c.4643C>T	p.Pro1548Leu	p.P1548L	ENST00000356435		1548	cCg/cTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500768	8500768	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757479150		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	200	368	1	ENST00000356435.5:c.2114G>A	p.Arg705Gln	p.R705Q	ENST00000356435		705	cGa/cAa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87549095	87549095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	186	393	0	ENST00000277120.3:c.1652G>A	p.Arg551Gln	p.R551Q	ENST00000277120		551	cGa/cAa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635175	87635175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	196	376	0	ENST00000277120.3:c.2227T>C	p.Tyr743His	p.Y743H	ENST00000277120		743	Tac/Cac																																																																															
SYK	6850	MSKCC	GRCh37	9	93650147	93650147	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	168	387	0	ENST00000375746.1:c.1698C>A	p.Phe566Leu	p.F566L	ENST00000375746	NM_001174167.1	566	ttC/ttA																																																																															
BTK	695	MSKCC	GRCh37	X	100611808	100611808	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	175	331	0	ENST00000308731.7:c.1313C>A	p.Ser438Tyr	p.S438Y	ENST00000308731	NM_000061.2	438	tCt/tAt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933593	39933594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	224	495	0	ENST00000378444.4:c.1005dup	p.Ser336LeufsTer45	p.S336Lfs*45	ENST00000378444	NM_001123385.1	335	-/C																																																																															
ARAF	369	MSKCC	GRCh37	X	47426444	47426444	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1439786171		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	272	547	3	ENST00000377045.4:c.787G>A	p.Val263Met	p.V263M	ENST00000377045	NM_001654.4	263	Gtg/Atg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410597	63410597	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758807218		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	223	468	0	ENST00000330258.3:c.2570G>A	p.Arg857Gln	p.R857Q	ENST00000330258	NM_152424.3	857	cGa/cAa																																																																															
MED12	9968	MSKCC	GRCh37	X	70350003	70350003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	176	444	0	ENST00000374080.3:c.3986G>A	p.Arg1329Gln	p.R1329Q	ENST00000374080		1329	cGa/cAa																																																																															
ATRX	546	MSKCC	GRCh37	X	76776955	76776955	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	105	342	0	ENST00000373344.5:c.6997G>T	p.Glu2333Ter	p.E2333*	ENST00000373344	NM_000489.3	2333	Gaa/Taa																																																																															
ATRX	546	MSKCC	GRCh37	X	76855969	76855969	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	135	334	0	ENST00000373344.5:c.5631G>T	p.Gln1877His	p.Q1877H	ENST00000373344	NM_000489.3	1877	caG/caT																																																																															
ATRX	546	MSKCC	GRCh37	X	76888725	76888725	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	118	382	0	ENST00000373344.5:c.5104G>T	p.Glu1702Ter	p.E1702*	ENST00000373344	NM_000489.3	1702	Gaa/Taa																																																																															
ATRX	546	MSKCC	GRCh37	X	76907720	76907720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	174	352	0	ENST00000373344.5:c.4441C>T	p.Arg1481Trp	p.R1481W	ENST00000373344	NM_000489.3	1481	Cgg/Tgg																																																																															
ATRX	546	MSKCC	GRCh37	X	76937769	76937769	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs371962239		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	174	379	0	ENST00000373344.5:c.2979G>T	p.Lys993Asn	p.K993N	ENST00000373344	NM_000489.3	993	aaG/aaT																																																																															
ATRX	546	MSKCC	GRCh37	X	76937966	76937966	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	186	353	0	ENST00000373344.5:c.2782G>T	p.Glu928Ter	p.E928*	ENST00000373344	NM_000489.3	928	Gag/Tag																																																																															
ATRX	546	MSKCC	GRCh37	X	76939266	76939266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	175	367	0	ENST00000373344.5:c.1482G>T	p.Lys494Asn	p.K494N	ENST00000373344	NM_000489.3	494	aaG/aaT																																																																															
NRAS	4893	MSKCC	GRCh37	1	115252327	115252327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	187	317	0	ENST00000369535.4:c.313G>T	p.Asp105Tyr	p.D105Y	ENST00000369535	NM_002524.4	105	Gac/Tac																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115273194	115273194	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	236	402	0	ENST00000438362.2:c.1264T>G	p.Phe422Val	p.F422V	ENST00000438362	NM_001242891.1	422	Ttc/Gtc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115276445	115276445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	193	427	0	ENST00000438362.2:c.883C>T	p.Pro295Ser	p.P295S	ENST00000438362	NM_001242891.1	295	Cct/Tct																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120459103	120459103	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	277	534	0	ENST00000256646.2:c.6242C>A	p.Ser2081Ter	p.S2081*	ENST00000256646	NM_024408.3	2081	tCa/tAa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120497670	120497670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	272	393	0	ENST00000256646.2:c.2212C>A	p.Leu738Ile	p.L738I	ENST00000256646	NM_024408.3	738	Ctc/Atc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120512184	120512184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	267	499	0	ENST00000256646.2:c.1058G>A	p.Cys353Tyr	p.C353Y	ENST00000256646	NM_024408.3	353	tGc/tAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256099	16256099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	261	542	0	ENST00000375759.3:c.3364C>A	p.Gln1122Lys	p.Q1122K	ENST00000375759	NM_015001.2	1122	Caa/Aaa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162741977	162741977	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	251	419	0	ENST00000367921.3:c.1668G>T	p.Glu556Asp	p.E556D	ENST00000367921	NM_006182.2	556	gaG/gaT																																																																															
NUF2	83540	MSKCC	GRCh37	1	163313652	163313652	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	136	222	0	ENST00000271452.3:c.799A>C	p.Asn267His	p.N267H	ENST00000271452	NM_145697.2	267	Aat/Cat																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176105677	176105677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	97	242	0	ENST00000367669.3:c.838G>A	p.Glu280Lys	p.E280K	ENST00000367669	NM_022457.5	280	Gaa/Aaa																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206661308	206661308	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	211	415	0	ENST00000367120.3:c.1674G>T	p.Lys558Asn	p.K558N	ENST00000367120	NM_014002.3	558	aaG/aaT																																																																															
IL10	3586	MSKCC	GRCh37	1	206942065	206942065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	226	387	0	ENST00000423557.1:c.453G>T	p.Glu151Asp	p.E151D	ENST00000423557	NM_000572.2	151	gaG/gaT																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488874	231488874	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	190	363	0	ENST00000295050.7:c.1237G>T	p.Asp413Tyr	p.D413Y	ENST00000295050	NM_032018.5	413	Gat/Tat																																																																															
MYCL	4610	MSKCC	GRCh37	1	40367050	40367050	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	222	478	0	ENST00000397332.2:c.147C>A	p.Phe49Leu	p.F49L	ENST00000397332	NM_001033082.2	49	ttC/ttA																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46527693	46527693	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	160	265	0	ENST00000262741.5:c.672A>C	p.Lys224Asn	p.K224N	ENST00000262741	NM_003629.3	224	aaA/aaC																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726281	46726281	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	271	459	0	ENST00000371975.4:c.475G>T	p.Glu159Ter	p.E159*	ENST00000371975	NM_003579.3	159	Gag/Tag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65304147	65304147	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	179	353	0	ENST00000342505.4:c.2967+1G>A		p.X989_splice	ENST00000342505	NM_002227.2	989																																																																																
JAK1	3716	MSKCC	GRCh37	1	65334994	65334994	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	161	311	0	ENST00000342505.4:c.647G>T	p.Ser216Ile	p.S216I	ENST00000342505	NM_002227.2	216	aGc/aTc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339081	65339081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	238	434	0	ENST00000342505.4:c.455C>T	p.Ala152Val	p.A152V	ENST00000342505	NM_002227.2	152	gCc/gTc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114901009	114901009	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	242	453	0	ENST00000543371.1:c.619A>G	p.Ser207Gly	p.S207G	ENST00000543371	NM_001198531.1	207	Agc/Ggc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920394	114920394	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	247	312	0	ENST00000543371.1:c.1335G>T	p.Lys445Asn	p.K445N	ENST00000543371	NM_001198531.1	445	aaG/aaT																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123298228	123298228	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	148	363	0	ENST00000358487.5:c.626T>C	p.Val209Ala	p.V209A	ENST00000358487	NM_000141.4	209	gTa/gCa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63845655	63845656	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	245	370	0	ENST00000279873.7:c.1395dup	p.Glu466ArgfsTer21	p.E466Rfs*21	ENST00000279873	NM_032199.2	465	gca/gcAa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851279	63851279	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	277	460	0	ENST00000279873.7:c.2057T>C	p.Ile686Thr	p.I686T	ENST00000279873	NM_032199.2	686	aTc/aCc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332859	70332859	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	240	429	0	ENST00000373644.4:c.764G>T	p.Arg255Ile	p.R255I	ENST00000373644	NM_030625.2	255	aGa/aTa																																																																															
TET1	80312	MSKCC	GRCh37	10	70360781	70360781	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	140	263	0	ENST00000373644.4:c.1958A>C	p.Lys653Thr	p.K653T	ENST00000373644	NM_030625.2	653	aAa/aCa																																																																															
TET1	80312	MSKCC	GRCh37	10	70405470	70405470	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	224	418	0	ENST00000373644.4:c.2984A>C	p.Glu995Ala	p.E995A	ENST00000373644	NM_030625.2	995	gAa/gCa																																																																															
TET1	80312	MSKCC	GRCh37	10	70406669	70406669	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	190	376	0	ENST00000373644.4:c.4183T>G	p.Phe1395Val	p.F1395V	ENST00000373644	NM_030625.2	1395	Ttt/Gtt																																																																															
PGR	5241	MSKCC	GRCh37	11	100998453	100998453	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	154	420	0	ENST00000325455.5:c.1349C>A	p.Ser450Tyr	p.S450Y	ENST00000325455	NM_001202474.3	450	tCt/tAt																																																																															
PGR	5241	MSKCC	GRCh37	11	100998733	100998733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	213	393	0	ENST00000325455.5:c.1069G>A	p.Asp357Asn	p.D357N	ENST00000325455	NM_001202474.3	357	Gac/Aac																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195441	102195441	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	222	397	0	ENST00000263464.3:c.201C>A	p.Phe67Leu	p.F67L	ENST00000263464	NM_001165.4	67	ttC/ttA																																																																															
BIRC3	330	MSKCC	GRCh37	11	102199674	102199674	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	91	159	0	ENST00000263464.3:c.1079C>A	p.Ser360Ter	p.S360*	ENST00000263464	NM_001165.4	360	tCa/tAa																																																																															
CTR9	9646	MSKCC	GRCh37	11	10785009	10785009	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	164	331	0	ENST00000361367.2:c.881A>G	p.His294Arg	p.H294R	ENST00000361367	NM_014633.3	294	cAt/cGt																																																																															
ATM	472	MSKCC	GRCh37	11	108106442	108106442	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	156	321	0	ENST00000278616.4:c.377A>G	p.Asp126Gly	p.D126G	ENST00000278616	NM_000051.3	126	gAt/gGt																																																																															
ATM	472	MSKCC	GRCh37	11	108106472	108106472	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	173	319	0	ENST00000278616.4:c.407T>C	p.Ile136Thr	p.I136T	ENST00000278616	NM_000051.3	136	aTt/aCt																																																																															
ATM	472	MSKCC	GRCh37	11	108128269	108128269	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	170	264	0	ENST00000278616.4:c.2312T>A	p.Phe771Tyr	p.F771Y	ENST00000278616	NM_000051.3	771	tTc/tAc																																																																															
ATM	472	MSKCC	GRCh37	11	108175465	108175465	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	139	281	0	ENST00000278616.4:c.5560A>G	p.Thr1854Ala	p.T1854A	ENST00000278616	NM_000051.3	1854	Aca/Gca																																																																															
ATM	472	MSKCC	GRCh37	11	108199857	108199857	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	192	360	0	ENST00000278616.4:c.7199G>T	p.Arg2400Ile	p.R2400I	ENST00000278616	NM_000051.3	2400	aGa/aTa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373640	118373640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	216	456	0	ENST00000534358.1:c.7033G>A	p.Glu2345Lys	p.E2345K	ENST00000534358	NM_005933.3	2345	Gaa/Aaa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376128	118376128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	245	458	0	ENST00000534358.1:c.9521G>A	p.Ser3174Asn	p.S3174N	ENST00000534358	NM_005933.3	3174	aGt/aAt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376808	118376808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	258	425	0	ENST00000534358.1:c.10201G>A	p.Ala3401Thr	p.A3401T	ENST00000534358	NM_005933.3	3401	Gct/Act																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741664	17741664	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	208	407	0	ENST00000250003.3:c.335A>C	p.Lys112Thr	p.K112T	ENST00000250003	NM_002478.4	112	aAg/aCg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741805	17741805	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	158	313	0	ENST00000250003.3:c.476G>T	p.Gly159Val	p.G159V	ENST00000250003	NM_002478.4	159	gGc/gTc																																																																															
WT1	7490	MSKCC	GRCh37	11	32410623	32410623	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	190	386	0	ENST00000332351.3:c.1535A>C	p.Lys512Thr	p.K512T	ENST00000332351	NM_024426.4	512	aAa/aCa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64126896	64126896	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	177	386	1	ENST00000334205.4:c.102G>T	p.Glu34Asp	p.E34D	ENST00000334205	NM_003942.2	34	gaG/gaT																																																																															
CCND1	595	MSKCC	GRCh37	11	69458717	69458717	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	182	399	0	ENST00000227507.2:c.532A>C	p.Ile178Leu	p.I178L	ENST00000227507	NM_053056.2	178	Atc/Ctc																																																																															
GAB2	9846	MSKCC	GRCh37	11	77934527	77934527	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	247	412	0	ENST00000361507.4:c.1498C>T	p.Arg500Ter	p.R500*	ENST00000361507	NM_080491.2	500	Cga/Tga																																																																															
GAB2	9846	MSKCC	GRCh37	11	77937828	77937828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs115318063		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	241	510	0	ENST00000361507.4:c.890C>T	p.Thr297Met	p.T297M	ENST00000361507	NM_080491.2	297	aCg/aTg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94163149	94163149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	167	336	0	ENST00000323929.3:c.1998G>A	p.Trp666Ter	p.W666*	ENST00000323929	NM_005591.3	666	tgG/tgA																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94203740	94203740	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752483206		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	150	338	0	ENST00000323929.3:c.914G>A	p.Arg305Gln	p.R305Q	ENST00000323929	NM_005591.3	305	cGg/cAg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94224026	94224026	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	165	325	0	ENST00000323929.3:c.126A>C	p.Glu42Asp	p.E42D	ENST00000323929	NM_005591.3	42	gaA/gaC																																																																															
SESN3	143686	MSKCC	GRCh37	11	94924710	94924710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	254	372	0	ENST00000536441.1:c.200C>A	p.Ser67Tyr	p.S67Y	ENST00000536441	NM_144665.3	67	tCt/tAt																																																																															
SETD8	387893	MSKCC	GRCh37	12	123879734	123879734	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			34	23	19	0	ENST00000330479.4:c.430T>C	p.Ser144Pro	p.S144P	ENST00000330479	NM_020382.3	144	Tct/Cct																																																																															
POLE	5426	MSKCC	GRCh37	12	133257839	133257839	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	230	440	0	ENST00000320574.5:c.89del	p.Ser30TrpfsTer24	p.S30Wfs*24	ENST00000320574	NM_006231.2	30	tCg/tg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18656226	18656226	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	171	372	0	ENST00000266497.5:c.2905A>C	p.Met969Leu	p.M969L	ENST00000266497		969	Atg/Ctg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21626506	21626506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	123	319	0	ENST00000421138.2:c.1426G>A	p.Asp476Asn	p.D476N	ENST00000421138		476	Gat/Aat																																																																															
RECQL	5965	MSKCC	GRCh37	12	21636508	21636508	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	110	263	0	ENST00000421138.2:c.502G>A	p.Glu168Lys	p.E168K	ENST00000421138		168	Gag/Aag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416697	416697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	242	447	0	ENST00000399788.2:c.3853G>A	p.Glu1285Lys	p.E1285K	ENST00000399788	NM_001042603.1	1285	Gaa/Aaa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	419064	419065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	166	328	0	ENST00000399788.2:c.3282dup	p.Glu1095ArgfsTer18	p.E1095Rfs*18	ENST00000399788	NM_001042603.1	1094	-/A																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231104	46231105	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	255	277	0	ENST00000334344.6:c.1028dup	p.Leu343PhefsTer6	p.L343Ffs*6	ENST00000334344	NM_152641.2	342	ctt/cTtt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49422661	49422661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	237	407	0	ENST00000301067.7:c.14332A>G	p.Lys4778Glu	p.K4778E	ENST00000301067	NM_003482.3	4778	Aaa/Gaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448338	49448338	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	224	454	0	ENST00000301067.7:c.373A>G	p.Thr125Ala	p.T125A	ENST00000301067	NM_003482.3	125	Aca/Gca																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438260	110438260	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	161	383	0	ENST00000375856.3:c.141C>A	p.Phe47Leu	p.F47L	ENST00000375856	NM_003749.2	47	ttC/ttA																																																																															
FLT3	2322	MSKCC	GRCh37	13	28602404	28602404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	193	275	0	ENST00000241453.7:c.1964G>T	p.Arg655Ile	p.R655I	ENST00000241453	NM_004119.2	655	aGa/aTa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32893246	32893246	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80358391		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	129	315	0	ENST00000380152.3:c.100G>A	p.Glu34Lys	p.E34K	ENST00000380152		34	Gaa/Aaa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913629	32913629	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	124	292	0	ENST00000380152.3:c.5137A>C	p.Asn1713His	p.N1713H	ENST00000380152		1713	Aat/Cat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929105	32929105	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	149	314	0	ENST00000380152.3:c.7115C>A	p.Ser2372Ter	p.S2372*	ENST00000380152		2372	tCa/tAa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95557660	95557660	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	172	368	0	ENST00000343455.3:c.5407G>T	p.Glu1803Ter	p.E1803*	ENST00000343455	NM_177438.2	1803	Gaa/Taa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562991	95562991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	241	468	1	ENST00000343455.3:c.4266G>T	p.Glu1422Asp	p.E1422D	ENST00000343455	NM_177438.2	1422	gaG/gaT																																																																															
DICER1	23405	MSKCC	GRCh37	14	95592916	95592916	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	137	208	0	ENST00000343455.3:c.903+1G>T		p.X301_splice	ENST00000343455	NM_177438.2	301																																																																																
B2M	567	MSKCC	GRCh37	15	45007660	45007661	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAAT			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	169	412	0	ENST00000558401.1:c.109_112dup	p.Gly38GlufsTer20	p.G38Efs*20	ENST00000558401	NM_004048.2	36	gag/gaGAATg																																																																															
USP8	9101	MSKCC	GRCh37	15	50789361	50789361	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	162	322	0	ENST00000307179.4:c.2971C>T	p.Arg991Ter	p.R991*	ENST00000307179		991	Cga/Tga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88670452	88670452	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	179	370	0	ENST00000360948.2:c.1234G>T	p.Glu412Ter	p.E412*	ENST00000360948	NM_001012338.2	412	Gaa/Taa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029444	14029444	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs549865610		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	208	449	0	ENST00000311895.7:c.1655C>T	p.Thr552Ile	p.T552I	ENST00000311895	NM_005236.2	552	aCt/aTt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23634383	23634383	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	162	310	0	ENST00000261584.4:c.2903C>A	p.Ala968Asp	p.A968D	ENST00000261584	NM_024675.3	968	gCt/gAt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23649410	23649410	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	164	333	0	ENST00000261584.4:c.89A>C	p.Lys30Thr	p.K30T	ENST00000261584	NM_024675.3	30	aAg/aCg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658503	3658503	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	230	458	0	ENST00000294008.3:c.463G>T	p.Glu155Ter	p.E155*	ENST00000294008	NM_032444.2	155	Gaa/Taa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843471	3843471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	231	420	0	ENST00000262367.5:c.1132C>T	p.Arg378Trp	p.R378W	ENST00000262367	NM_004380.2	378	Cgg/Tgg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783763	50783763	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	220	414	0	ENST00000398568.2:c.154G>T	p.Asp52Tyr	p.D52Y	ENST00000398568	NM_001042412.1	52	Gat/Tat																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813753	50813753	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	235	384	0	ENST00000398568.2:c.1307C>A	p.Ser436Tyr	p.S436Y	ENST00000398568	NM_001042412.1	436	tCt/tAt																																																																															
CDH1	999	MSKCC	GRCh37	16	68862184	68862184	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	157	379	0	ENST00000261769.5:c.2272G>T	p.Glu758Ter	p.E758*	ENST00000261769	NM_004360.3	758	Gaa/Taa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81941379	81941379	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	163	299	0	ENST00000359376.3:c.1557G>T	p.Gln519His	p.Q519H	ENST00000359376	NM_002661.3	519	caG/caT																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544305	86544305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	166	465	0	ENST00000262426.4:c.130C>T	p.Arg44Trp	p.R44W	ENST00000262426	NM_001451.2	44	Cgg/Tgg																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544699	86544699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	185	436	0	ENST00000262426.4:c.524C>T	p.Ser175Leu	p.S175L	ENST00000262426	NM_001451.2	175	tCg/tTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15995354	15995354	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	228	326	0	ENST00000268712.3:c.2839A>C	p.Asn947His	p.N947H	ENST00000268712	NM_006311.3	947	Aac/Cac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16024582	16024582	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	194	300	0	ENST00000268712.3:c.1636G>T	p.Glu546Ter	p.E546*	ENST00000268712	NM_006311.3	546	Gaa/Taa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119754	17119754	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1226407835		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	207	413	0	ENST00000285071.4:c.1240C>T	p.Arg414Trp	p.R414W	ENST00000285071	NM_144997.5	414	Cgg/Tgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29550489	29550489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	132	255	0	ENST00000358273.4:c.1749G>T	p.Lys583Asn	p.K583N	ENST00000358273	NM_001042492.2	583	aaG/aaT																																																																															
NF1	4763	MSKCC	GRCh37	17	29586144	29586144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	114	272	0	ENST00000358273.4:c.4427G>A	p.Arg1476His	p.R1476H	ENST00000358273	NM_001042492.2	1476	cGc/cAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29667662	29667662	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	160	286	0	ENST00000358273.4:c.7061A>C	p.Lys2354Thr	p.K2354T	ENST00000358273	NM_001042492.2	2354	aAg/aCg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30303538	30303538	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			42	14	38	0	ENST00000322652.5:c.824-2A>G		p.X275_splice	ENST00000322652	NM_015355.2	275																																																																																
BRCA1	672	MSKCC	GRCh37	17	41243630	41243630	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	219	413	0	ENST00000357654.3:c.3918G>T	p.Leu1306Phe	p.L1306F	ENST00000357654	NM_007294.3	1306	ttG/ttT																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245305	41245305	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	241	397	0	ENST00000357654.3:c.2243A>C	p.Lys748Thr	p.K748T	ENST00000357654	NM_007294.3	748	aAa/aCa																																																																															
MSI2	124540	MSKCC	GRCh37	17	55607058	55607058	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	168	308	0	ENST00000284073.2:c.427T>C	p.Phe143Leu	p.F143L	ENST00000284073	NM_138962.2	143	Ttt/Ctt																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7984004	7984004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	180	432	0	ENST00000319144.4:c.622G>A	p.Ala208Thr	p.A208T	ENST00000319144	NM_001139.2	208	Gcc/Acc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575123	48575123	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	179	382	0	ENST00000342988.3:c.317A>C	p.Lys106Thr	p.K106T	ENST00000342988	NM_005359.5	106	aAa/aCa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098408	11098408	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	208	460	0	ENST00000344626.4:c.926G>T	p.Gly309Val	p.G309V	ENST00000344626	NM_003072.3	309	gGc/gTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135035	11135035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	199	349	0	ENST00000344626.4:c.3002C>A	p.Ser1001Tyr	p.S1001Y	ENST00000344626	NM_003072.3	1001	tCt/tAt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1625655	1625655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	226	373	0	ENST00000344749.5:c.419C>T	p.Pro140Leu	p.P140L	ENST00000344749	NM_001136139.2	140	cCt/cTt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5240257	5240257	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	199	391	0	ENST00000357368.4:c.1657A>G	p.Ile553Val	p.I553V	ENST00000357368	NM_002850.3	553	Atc/Gtc																																																																															
INSR	3643	MSKCC	GRCh37	19	7125504	7125504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	232	449	0	ENST00000302850.5:c.3048G>T	p.Trp1016Cys	p.W1016C	ENST00000302850	NM_000208.2	1016	tgG/tgT																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881439	111881439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	218	376	0	ENST00000393256.3:c.117G>T	p.Glu39Asp	p.E39D	ENST00000393256	NM_006538.4	39	gaG/gaT																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096580	178096581	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	212	424	0	ENST00000397062.3:c.750dup	p.Glu251Ter	p.E251*	ENST00000397062	NM_006164.4	250	-/T																																																																															
IDH1	3417	MSKCC	GRCh37	2	209108316	209108316	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	150	364	0	ENST00000345146.2:c.533T>G	p.Val178Gly	p.V178G	ENST00000345146	NM_005896.2	178	gTt/gGt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212570088	212570088	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	169	319	0	ENST00000342788.4:c.1153G>T	p.Asp385Tyr	p.D385Y	ENST00000342788	NM_005235.2	385	Gac/Tac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812276	212812276	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	309	361	0	ENST00000342788.4:c.300G>T	p.Glu100Asp	p.E100D	ENST00000342788	NM_005235.2	100	gaG/gaT																																																																															
CUL3	8452	MSKCC	GRCh37	2	225362472	225362472	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	123	268	0	ENST00000264414.4:c.1705A>C	p.Lys569Gln	p.K569Q	ENST00000264414	NM_003590.4	569	Aag/Cag																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371596	225371596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	82	298	0	ENST00000264414.4:c.1008G>T	p.Lys336Asn	p.K336N	ENST00000264414	NM_003590.4	336	aaG/aaT																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662193	227662193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	258	447	0	ENST00000305123.5:c.1262G>A	p.Ser421Asn	p.S421N	ENST00000305123	NM_005544.2	421	aGc/aAc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25497841	25497841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	181	332	0	ENST00000264709.3:c.608G>A	p.Arg203Gln	p.R203Q	ENST00000264709	NM_175629.2	203	cGg/cAg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965429	25965429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	290	463	0	ENST00000435504.4:c.3777G>T	p.Lys1259Asn	p.K1259N	ENST00000435504		1259	aaG/aaT																																																																															
ALK	238	MSKCC	GRCh37	2	29416511	29416511	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	290	470	0	ENST00000389048.3:c.4442C>A	p.Ser1481Tyr	p.S1481Y	ENST00000389048	NM_004304.4	1481	tCt/tAt																																																																															
ALK	238	MSKCC	GRCh37	2	30143129	30143129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	243	481	0	ENST00000389048.3:c.397C>T	p.Arg133Cys	p.R133C	ENST00000389048	NM_004304.4	133	Cgc/Tgc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46608863	46608863	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	195	418	0	ENST00000263734.3:c.2172+2T>G		p.X724_splice	ENST00000263734	NM_001430.4	724																																																																																
MSH6	2956	MSKCC	GRCh37	2	48026233	48026233	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	210	424	0	ENST00000234420.5:c.1111G>T	p.Glu371Ter	p.E371*	ENST00000234420	NM_000179.2	371	Gaa/Taa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61717849	61717849	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	223	358	0	ENST00000401558.2:c.1950A>C	p.Gln650His	p.Q650H	ENST00000401558	NM_003400.3	650	caA/caC																																																																															
XPO1	7514	MSKCC	GRCh37	2	61720089	61720089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	170	340	0	ENST00000401558.2:c.1345G>T	p.Asp449Tyr	p.D449Y	ENST00000401558	NM_003400.3	449	Gat/Tat																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630100	67630100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	106	274	0	ENST00000272342.5:c.536G>A	p.Cys179Tyr	p.C179Y	ENST00000272342	NM_019002.3	179	tGc/tAc																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630464	67630464	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	124	301	0	ENST00000272342.5:c.650A>G	p.Asp217Gly	p.D217G	ENST00000272342	NM_019002.3	217	gAt/gGt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99163053	99163053	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	175	301	0	ENST00000074304.5:c.1059G>T	p.Gln353His	p.Q353H	ENST00000074304	NM_001134224.1	353	caG/caT																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31374309	31374309	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	204	437	0	ENST00000328111.2:c.308T>C	p.Val103Ala	p.V103A	ENST00000328111	NM_006892.3	103	gTc/gCc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31379501	31379501	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	194	330	0	ENST00000328111.2:c.908A>G	p.Tyr303Cys	p.Y303C	ENST00000328111	NM_006892.3	303	tAc/tGc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31383305	31383305	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	242	490	0	ENST00000328111.2:c.1217A>G	p.Asn406Ser	p.N406S	ENST00000328111	NM_006892.3	406	aAc/aGc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39725919	39725919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	198	330	1	ENST00000361337.2:c.790C>T	p.Leu264Phe	p.L264F	ENST00000361337	NM_003286.2	264	Ctc/Ttc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39750382	39750382	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	202	346	0	ENST00000361337.2:c.1997A>C	p.Lys666Thr	p.K666T	ENST00000361337	NM_003286.2	666	aAa/aCa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40727127	40727127	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	252	469	0	ENST00000373198.4:c.3837C>A	p.Phe1279Leu	p.F1279L	ENST00000373198	NM_133170.3	1279	ttC/ttA																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419945	41419945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	246	465	0	ENST00000373198.4:c.376G>T	p.Val126Leu	p.V126L	ENST00000373198	NM_133170.3	126	Gtg/Ttg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265481	46265481	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	205	382	0	ENST00000371998.3:c.2351A>C	p.Lys784Thr	p.K784T	ENST00000371998		784	aAa/aCa																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62319327	62319327	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs778782744		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	219	470	0	ENST00000482936.1:c.1519G>A	p.Asp507Asn	p.D507N	ENST00000482936		507	Gac/Aac																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62320445	62320445	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	142	335	0	ENST00000482936.1:c.1838G>A	p.Gly613Glu	p.G613E	ENST00000482936		613	gGg/gAg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624807	9624807	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	200	436	0	ENST00000353224.5:c.170C>A	p.Ser57Ter	p.S57*	ENST00000353224	NM_177990.2	57	tCa/tAa																																																																															
ERG	2078	MSKCC	GRCh37	21	39755481	39755481	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	289	511	0	ENST00000288319.7:c.1284G>T	p.Met428Ile	p.M428I	ENST00000288319	NM_182918.3	428	atG/atT																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288119	21288119	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	206	416	0	ENST00000354336.3:c.364G>T	p.Glu122Ter	p.E122*	ENST00000354336	NM_005207.3	122	Gaa/Taa																																																																															
EP300	2033	MSKCC	GRCh37	22	41553397	41553397	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	185	298	1	ENST00000263253.7:c.3486C>A	p.Tyr1162Ter	p.Y1162*	ENST00000263253	NM_001429.3	1162	taC/taA																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851861	134851861	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372455013		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	219	489	0	ENST00000398015.3:c.1267G>A	p.Val423Ile	p.V423I	ENST00000398015	NM_004441.4	423	Gtc/Atc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417853	138417853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	162	277	0	ENST00000289153.2:c.1666G>A	p.Asp556Asn	p.D556N	ENST00000289153	NM_006219.2	556	Gat/Aat																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138426030	138426031	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	128	268	0	ENST00000289153.2:c.1500dup	p.Gln501ThrfsTer10	p.Q501Tfs*10	ENST00000289153	NM_006219.2	500	-/A																																																																															
ATR	545	MSKCC	GRCh37	3	142279189	142279189	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	163	297	0	ENST00000350721.4:c.1457T>C	p.Val486Ala	p.V486A	ENST00000350721	NM_001184.3	486	gTt/gCt																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374964	149374964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	221	428	0	ENST00000360632.3:c.130C>T	p.Arg44Trp	p.R44W	ENST00000360632	NM_015472.4	44	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951891	178951891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	131	328	0	ENST00000263967.3:c.2946G>T	p.Glu982Asp	p.E982D	ENST00000263967	NM_006218.2	982	gaG/gaT																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430255	181430255	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	164	325	0	ENST00000325404.1:c.107A>G	p.Asn36Ser	p.N36S	ENST00000325404	NM_003106.3	36	aAc/aGc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686299	30686299	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs767191783		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	523	356	0	ENST00000359013.4:c.230A>C	p.Lys77Thr	p.K77T	ENST00000359013	NM_001024847.2	77	aAa/aCa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715653	30715653	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	209	371	0	ENST00000359013.4:c.1386G>T	p.Glu462Asp	p.E462D	ENST00000359013	NM_001024847.2	462	gaG/gaT																																																																															
MYD88	4615	MSKCC	GRCh37	3	38181475	38181475	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	234	466	0	ENST00000396334.3:c.488T>C	p.Leu163Pro	p.L163P	ENST00000396334	NM_002468.4	163	cTt/cCt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277922	41277922	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	203	416	0	ENST00000349496.5:c.1886A>G	p.Glu629Gly	p.E629G	ENST00000349496	NM_001904.3	629	gAa/gGa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165331	47165331	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	200	420	0	ENST00000409792.3:c.795A>C	p.Glu265Asp	p.E265D	ENST00000409792	NM_014159.6	265	gaA/gaC																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436683	52436683	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	194	453	0	ENST00000460680.1:c.1991A>G	p.Asp664Gly	p.D664G	ENST00000460680	NM_004656.3	664	gAc/gGc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643581	52643581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	228	395	0	ENST00000394830.3:c.2315C>T	p.Pro772Leu	p.P772L	ENST00000394830	NM_018313.4	772	cCa/cTa																																																																															
MITF	4286	MSKCC	GRCh37	3	70001006	70001006	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	150	303	0	ENST00000352241.4:c.906A>C	p.Lys302Asn	p.K302N	ENST00000352241	NM_198159.2	302	aaA/aaC																																																																															
MITF	4286	MSKCC	GRCh37	3	70008509	70008509	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	223	355	0	ENST00000352241.4:c.1099G>T	p.Glu367Ter	p.E367*	ENST00000352241	NM_198159.2	367	Gaa/Taa																																																																															
MITF	4286	MSKCC	GRCh37	3	70014298	70014298	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142372494		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	211	441	0	ENST00000352241.4:c.1462G>A	p.Gly488Ser	p.G488S	ENST00000352241	NM_198159.2	488	Ggt/Agt																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114170	73114170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	201	406	0	ENST00000356692.5:c.806C>A	p.Ser269Tyr	p.S269Y	ENST00000356692		269	tCt/tAt																																																																															
TET2	54790	MSKCC	GRCh37	4	106156514	106156514	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	264	444	0	ENST00000380013.4:c.1415C>A	p.Pro472His	p.P472H	ENST00000380013	NM_001127208.2	472	cCt/cAt																																																																															
TET2	54790	MSKCC	GRCh37	4	106156966	106156966	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	282	488	0	ENST00000380013.4:c.1867A>C	p.Lys623Gln	p.K623Q	ENST00000380013	NM_001127208.2	623	Aaa/Caa																																																																															
TET2	54790	MSKCC	GRCh37	4	106158209	106158209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	186	410	0	ENST00000380013.4:c.3110C>T	p.Ala1037Val	p.A1037V	ENST00000380013	NM_001127208.2	1037	gCc/gTc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143129629	143129629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	94	260	0	ENST00000262992.4:c.1021C>T	p.Pro341Ser	p.P341S	ENST00000262992	NM_001101669.1	341	Cca/Tca																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143130181	143130181	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	118	248	0	ENST00000262992.4:c.837-2A>G		p.X279_splice	ENST00000262992	NM_001101669.1	279																																																																																
FAT1	2195	MSKCC	GRCh37	4	187530473	187530473	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	240	414	0	ENST00000441802.2:c.10070T>C	p.Val3357Ala	p.V3357A	ENST00000441802	NM_005245.3	3357	gTt/gCt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187531068	187531068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	233	399	0	ENST00000441802.2:c.9955G>A	p.Ala3319Thr	p.A3319T	ENST00000441802	NM_005245.3	3319	Gcc/Acc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540853	187540853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	242	440	0	ENST00000441802.2:c.6887C>T	p.Ser2296Phe	p.S2296F	ENST00000441802	NM_005245.3	2296	tCt/tTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542057	187542057	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	254	463	0	ENST00000441802.2:c.5683G>T	p.Gly1895Ter	p.G1895*	ENST00000441802	NM_005245.3	1895	Gga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629198	187629198	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	210	462	0	ENST00000441802.2:c.1784A>C	p.Asp595Ala	p.D595A	ENST00000441802	NM_005245.3	595	gAt/gCt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1919881	1919881	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	204	383	0	ENST00000382895.3:c.941T>G	p.Ile314Ser	p.I314S	ENST00000382895	NM_133330.2	314	aTt/aGt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1978298	1978298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	252	436	0	ENST00000382895.3:c.3718G>A	p.Asp1240Asn	p.D1240N	ENST00000382895	NM_133330.2	1240	Gac/Aac																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133837	55133838	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	209	383	0	ENST00000257290.5:c.1055dup	p.Asn352LysfsTer7	p.N352Kfs*7	ENST00000257290	NM_006206.4	350	-/A																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155220	55155220	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1344020042		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	228	484	0	ENST00000257290.5:c.2819G>A	p.Arg940Lys	p.R940K	ENST00000257290	NM_006206.4	940	aGa/aAa																																																																															
KIT	3815	MSKCC	GRCh37	4	55602684	55602684	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	146	327	0	ENST00000288135.5:c.2505G>A	p.Trp835Ter	p.W835*	ENST00000288135	NM_000222.2	835	tgG/tgA																																																																															
KDR	3791	MSKCC	GRCh37	4	55981043	55981043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G	rs200675807		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	118	262	0	ENST00000263923.4:c.656T>C	p.Val219Ala	p.V219A	ENST00000263923	NM_002253.2	219	gTa/gCa																																																																															
KDR	3791	MSKCC	GRCh37	4	55987310	55987311	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	107	259	0	ENST00000263923.4:c.114dup	p.Asp39ArgfsTer6	p.D39Rfs*6	ENST00000263923	NM_002253.2	38	-/A																																																																															
REST	5978	MSKCC	GRCh37	4	57796402	57796402	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	199	428	0	ENST00000309042.7:c.1378A>G	p.Lys460Glu	p.K460E	ENST00000309042	NM_005612.4	460	Aag/Gag																																																																															
ALB	213	MSKCC	GRCh37	4	74280754	74280754	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	159	327	0	ENST00000295897.4:c.1061T>G	p.Phe354Cys	p.F354C	ENST00000295897	NM_000477.5	354	tTt/tGt																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84391447	84391447	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	63	164	0	ENST00000321945.7:c.385G>T	p.Asp129Tyr	p.D129Y	ENST00000321945	NM_139076.2	129	Gac/Tac																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99812427	99812427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	148	282	0	ENST00000280892.6:c.242G>A	p.Arg81Gln	p.R81Q	ENST00000280892	NM_001130678.1	81	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112173447	112173447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	194	411	0	ENST00000257430.4:c.2156C>T	p.Ala719Val	p.A719V	ENST00000257430	NM_000038.5	719	gCt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112173821	112173821	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	199	381	0	ENST00000257430.4:c.2530T>A	p.Ser844Thr	p.S844T	ENST00000257430	NM_000038.5	844	Tct/Act																																																																															
APC	324	MSKCC	GRCh37	5	112175791	112175791	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	194	426	0	ENST00000257430.4:c.4500T>A	p.Phe1500Leu	p.F1500L	ENST00000257430	NM_000038.5	1500	ttT/ttA																																																																															
APC	324	MSKCC	GRCh37	5	112177377	112177377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	212	383	0	ENST00000257430.4:c.6086C>T	p.Ser2029Phe	p.S2029F	ENST00000257430	NM_000038.5	2029	tCt/tTt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131915128	131915128	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	109	277	0	ENST00000265335.6:c.485C>A	p.Ser162Tyr	p.S162Y	ENST00000265335		162	tCt/tAt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131923317	131923317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	166	338	0	ENST00000265335.6:c.820G>T	p.Ala274Ser	p.A274S	ENST00000265335		274	Gcc/Tcc																																																																															
NPM1	4869	MSKCC	GRCh37	5	170817076	170817076	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	82	214	0	ENST00000296930.5:c.80A>C	p.Lys27Thr	p.K27T	ENST00000296930	NM_002520.6	27	aAa/aCa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38946603	38946603	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	95	237	0	ENST00000357387.3:c.4366C>T	p.Arg1456Ter	p.R1456*	ENST00000357387	NM_152756.3	1456	Cga/Tga																																																																															
MSH3	4437	MSKCC	GRCh37	5	79952253	79952253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	219	356	0	ENST00000265081.6:c.261G>T	p.Lys87Asn	p.K87N	ENST00000265081	NM_002439.4	87	aaG/aaT																																																																															
MSH3	4437	MSKCC	GRCh37	5	79966043	79966043	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	180	335	0	ENST00000265081.6:c.707A>C	p.Tyr236Ser	p.Y236S	ENST00000265081	NM_002439.4	236	tAc/tCc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79974847	79974847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	204	313	0	ENST00000265081.6:c.1275G>T	p.Glu425Asp	p.E425D	ENST00000265081	NM_002439.4	425	gaG/gaT																																																																															
MSH3	4437	MSKCC	GRCh37	5	80063821	80063821	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	114	334	0	ENST00000265081.6:c.1966A>C	p.Ile656Leu	p.I656L	ENST00000265081	NM_002439.4	656	Ata/Cta																																																																															
MSH3	4437	MSKCC	GRCh37	5	80083481	80083481	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	169	332	0	ENST00000265081.6:c.2533G>T	p.Asp845Tyr	p.D845Y	ENST00000265081	NM_002439.4	845	Gat/Tat																																																																															
RASA1	5921	MSKCC	GRCh37	5	86686662	86686662	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	187	374	0	ENST00000274376.6:c.3106A>C	p.Lys1036Gln	p.K1036Q	ENST00000274376	NM_002890.2	1036	Aaa/Caa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555018	106555018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	265	453	1	ENST00000369096.4:c.2135C>T	p.Ala712Val	p.A712V	ENST00000369096	NM_001198.3	712	gCg/gTg																																																																															
SESN1	27244	MSKCC	GRCh37	6	109322580	109322580	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	211	349	0	ENST00000436639.2:c.457T>C	p.Tyr153His	p.Y153H	ENST00000436639	NM_014454.2	153	Tat/Cat																																																																															
FYN	2534	MSKCC	GRCh37	6	112020822	112020822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	215	365	0	ENST00000368678.4:c.749C>T	p.Thr250Ile	p.T250I	ENST00000368678		250	aCc/aTc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117665248	117665248	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	176	308	0	ENST00000368508.3:c.4499G>T	p.Ser1500Ile	p.S1500I	ENST00000368508	NM_002944.2	1500	aGc/aTc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117687427	117687427	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	227	332	0	ENST00000368508.3:c.2624T>G	p.Phe875Cys	p.F875C	ENST00000368508	NM_002944.2	875	tTt/tGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382190	152382190	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777783665		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	175	368	0	ENST00000206249.3:c.1300C>T	p.Arg434Trp	p.R434W	ENST00000206249	NM_000125.3	434	Cgg/Tgg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056509	26056509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779648984		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	238	398	1	ENST00000343677.2:c.148G>A	p.Ala50Thr	p.A50T	ENST00000343677	NM_005319.3	50	Gcc/Acc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165079	32165079	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	159	363	0	ENST00000375023.3:c.5049C>A	p.Cys1683Ter	p.C1683*	ENST00000375023	NM_004557.3	1683	tgC/tgA																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166777	32166777	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	211	480	0	ENST00000375023.3:c.4461C>A	p.Phe1487Leu	p.F1487L	ENST00000375023	NM_004557.3	1487	ttC/ttA																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508699	106508699	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	202	415	0	ENST00000359195.3:c.693G>T	p.Gln231His	p.Q231H	ENST00000359195	NM_002649.2	231	caG/caT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509482	106509482	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	203	462	0	ENST00000359195.3:c.1476A>C	p.Glu492Asp	p.E492D	ENST00000359195	NM_002649.2	492	gaA/gaC																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545719	106545719	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	170	359	0	ENST00000359195.3:c.3196A>C	p.Lys1066Gln	p.K1066Q	ENST00000359195	NM_002649.2	1066	Aag/Cag																																																																															
MET	4233	MSKCC	GRCh37	7	116339297	116339297	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	228	385	0	ENST00000397752.3:c.159G>T	p.Gln53His	p.Q53H	ENST00000397752	NM_000245.2	53	caG/caT																																																																															
MET	4233	MSKCC	GRCh37	7	116371872	116371872	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	218	310	0	ENST00000397752.3:c.1351A>G	p.Thr451Ala	p.T451A	ENST00000397752	NM_000245.2	451	Acc/Gcc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860187	151860187	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	231	476	1	ENST00000262189.6:c.10475C>A	p.Ser3492Ter	p.S3492*	ENST00000262189	NM_170606.2	3492	tCa/tAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151893037	151893037	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	146	257	0	ENST00000262189.6:c.4333C>A	p.Leu1445Ile	p.L1445I	ENST00000262189	NM_170606.2	1445	Ctt/Att																																																																															
EGFR	1956	MSKCC	GRCh37	7	55269017	55269017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	262	480	0	ENST00000275493.2:c.3083C>A	p.Ser1028Tyr	p.S1028Y	ENST00000275493	NM_005228.3	1028	tCc/tAc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6042146	6042146	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142416537		P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	194	314	0	ENST00000265849.7:c.475G>A	p.Val159Met	p.V159M	ENST00000265849	NM_000535.5	159	Gtg/Atg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864198	117864198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	202	370	0	ENST00000297338.2:c.1459C>T	p.Pro487Ser	p.P487S	ENST00000297338	NM_006265.2	487	Cct/Tct																																																																															
MYC	4609	MSKCC	GRCh37	8	128752987	128752987	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	237	480	0	ENST00000377970.2:c.1148A>G	p.Asn383Ser	p.N383S	ENST00000377970	NM_002467.4	383	aAc/aGc																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540287	23540287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	187	413	0	ENST00000380871.4:c.116C>T	p.Ala39Val	p.A39V	ENST00000380871	NM_006167.3	39	gCg/gTg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285948	38285948	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	203	350	0	ENST00000425967.3:c.463C>A	p.Leu155Ile	p.L155I	ENST00000425967	NM_001174067.1	155	Ctc/Atc																																																																															
NBN	4683	MSKCC	GRCh37	8	90982686	90982686	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	180	323	0	ENST00000265433.3:c.802A>G	p.Thr268Ala	p.T268A	ENST00000265433	NM_002485.4	268	Acg/Gcg																																																																															
NBN	4683	MSKCC	GRCh37	8	90983469	90983469	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	120	255	0	ENST00000265433.3:c.634C>A	p.Leu212Met	p.L212M	ENST00000265433	NM_002485.4	212	Ctg/Atg																																																																															
ABL1	25	MSKCC	GRCh37	9	133729456	133729456	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	178	361	0	ENST00000318560.5:c.85C>A	p.Leu29Ile	p.L29I	ENST00000318560	NM_005157.4	29	Ctt/Att																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2054596	2054596	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	159	295	0	ENST00000349721.2:c.1047-1G>T		p.X349_splice	ENST00000349721	NM_003070.3	349																																																																																
SMARCA2	6595	MSKCC	GRCh37	9	2110311	2110311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	206	348	0	ENST00000349721.2:c.3350C>T	p.Ser1117Phe	p.S1117F	ENST00000349721	NM_003070.3	1117	tCc/tTc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2115902	2115902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	208	439	0	ENST00000349721.2:c.3537C>A	p.Ser1179Arg	p.S1179R	ENST00000349721	NM_003070.3	1179	agC/agA																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518308	8518308	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	192	311	0	ENST00000356435.5:c.1083A>C	p.Lys361Asn	p.K361N	ENST00000356435		361	aaA/aaC																																																																															
SYK	6850	MSKCC	GRCh37	9	93636550	93636550	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	200	332	0	ENST00000375746.1:c.980T>G	p.Leu327Arg	p.L327R	ENST00000375746	NM_001174167.1	327	cTt/cGt																																																																															
BTK	695	MSKCC	GRCh37	X	100608225	100608225	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	185	323	0	ENST00000308731.7:c.1865C>A	p.Ala622Asp	p.A622D	ENST00000308731	NM_000061.2	622	gCt/gAt																																																																															
BTK	695	MSKCC	GRCh37	X	100611105	100611105	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	158	376	0	ENST00000308731.7:c.1501A>G	p.Met501Val	p.M501V	ENST00000308731	NM_000061.2	501	Atg/Gtg																																																																															
BTK	695	MSKCC	GRCh37	X	100629605	100629605	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	121	326	0	ENST00000308731.7:c.159G>T	p.Lys53Asn	p.K53N	ENST00000308731	NM_000061.2	53	aaG/aaT																																																																															
STAG2	10735	MSKCC	GRCh37	X	123224449	123224449	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	183	278	0	ENST00000218089.9:c.3302G>T	p.Ser1101Ile	p.S1101I	ENST00000218089	NM_001042749.1	1101	aGt/aTt																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123504068	123504068	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	139	259	0	ENST00000371139.4:c.244A>C	p.Asn82His	p.N82H	ENST00000371139	NM_001114937.2	82	Aat/Cat																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15809090	15809090	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	184	319	0	ENST00000307771.7:c.75G>T	p.Glu25Asp	p.E25D	ENST00000307771	NM_005089.3	25	gaG/gaT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034462	47034462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	199	362	0	ENST00000329236.7:c.316G>A	p.Asp106Asn	p.D106N	ENST00000329236	NM_001204466.1	106	Gac/Aac																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410414	63410414	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	245	519	0	ENST00000330258.3:c.2753C>A	p.Ser918Tyr	p.S918Y	ENST00000330258	NM_152424.3	918	tCt/tAt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412905	63412905	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	237	509	0	ENST00000330258.3:c.262A>G	p.Lys88Glu	p.K88E	ENST00000330258	NM_152424.3	88	Aaa/Gaa																																																																															
AR	367	MSKCC	GRCh37	X	66766090	66766092	+	missense_variant	Missense_Mutation	ONP	CCA	CCA	TCG			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	193	426	0	ENST00000374690.3:c.1102_1104delinsTCG	p.Pro368Ser	p.P368S	ENST00000374690	NM_000044.3	368	CCA/TCG																																																																															
AR	367	MSKCC	GRCh37	X	66766256	66766256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	154	337	0	ENST00000374690.3:c.1268G>A	p.Gly423Asp	p.G423D	ENST00000374690	NM_000044.3	423	gGt/gAt																																																																															
AR	367	MSKCC	GRCh37	X	66942689	66942689	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	154	315	0	ENST00000374690.3:c.2470A>C	p.Asn824His	p.N824H	ENST00000374690	NM_000044.3	824	Aat/Cat																																																																															
ATRX	546	MSKCC	GRCh37	X	76874303	76874303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	106	304	0	ENST00000373344.5:c.5419C>T	p.Leu1807Phe	p.L1807F	ENST00000373344	NM_000489.3	1807	Ctc/Ttc																																																																															
ATRX	546	MSKCC	GRCh37	X	76939255	76939255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	189	359	0	ENST00000373344.5:c.1493G>T	p.Arg498Ile	p.R498I	ENST00000373344	NM_000489.3	498	aGa/aTa																																																																															
ATRX	546	MSKCC	GRCh37	X	76939297	76939297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	184	399	0	ENST00000373344.5:c.1451G>T	p.Arg484Ile	p.R484I	ENST00000373344	NM_000489.3	484	aGa/aTa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0013859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	196	763	2	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs137853076		P-0013859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	189	659	1	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs483352822		P-0013859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	38	540	0	ENST00000368323.3:c.270G>A	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atA																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602878	10602878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	199	619	0	ENST00000171111.5:c.700C>T	p.Arg234Trp	p.R234W	ENST00000171111	NM_203500.1	234	Cgg/Tgg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12632388	12632388	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730881002		P-0013859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	178	775	0	ENST00000251849.4:c.1279A>G	p.Ser427Gly	p.S427G	ENST00000251849	NM_002880.3	427	Agc/Ggc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0014177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1304	42	630	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0015016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	161	397	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88679190	88679190	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	62	238	1	ENST00000372037.3:c.1130G>T	p.Cys377Phe	p.C377F	ENST00000372037	NM_004329.2	377	tGc/tTc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123247549	123247549	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121918508		P-0015016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	83	505	1	ENST00000358487.5:c.1942G>A	p.Ala648Thr	p.A648T	ENST00000358487	NM_000141.4	648	Gcc/Acc																																																																															
LMO1	4004	MSKCC	GRCh37	11	8251977	8251977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	237	660	0	ENST00000335790.3:c.100C>T	p.Arg34Cys	p.R34C	ENST00000335790	NM_002315.2	34	Cgc/Tgc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0016903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	74	263	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118930	115118930	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	95	317	0	ENST00000257566.3:c.411A>T	p.Lys137Asn	p.K137N	ENST00000257566	NM_016569.3	137	aaA/aaT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	177	605	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727402	66727443	+	inframe_deletion	In_Frame_Del	DEL	CTAGAGCTTGATGAGCAGCAGCGAAAGCGCCTTGAGGCCTTT	CTAGAGCTTGATGAGCAGCAGCGAAAGCGCCTTGAGGCCTTT	-			P-0017752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	108	329	0	ENST00000307102.5:c.120_161del	p.Glu41_Leu54del	p.E41_L54del	ENST00000307102	NM_002755.3	40	CTAGAGCTTGATGAGCAGCAGCGAAAGCGCCTTGAGGCCTTT/-																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78831583	78831583	+	splice_region_variant,intron_variant	Splice_Region	DEL	C	C	-			P-0017752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	91	285	0	ENST00000306801.3:c.1399-3del		p.X467_splice	ENST00000306801	NM_020761.2	467																																																																																
IL7R	3575	MSKCC	GRCh37	5	35876476	35876476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1242	182	469	0	ENST00000303115.3:c.1268C>T	p.Ser423Phe	p.S423F	ENST00000303115	NM_002185.3	423	tCt/tTt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100523	157100527	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCG	GCCCG	-			P-0017752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	82	285	0	ENST00000346085.5:c.1463_1467del	p.Pro488LeufsTer45	p.P488Lfs*45	ENST00000346085	NM_020732.3	487	aGCCCG/a																																																																															
STAG2	10735	MSKCC	GRCh37	X	123171464	123171540	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCTGTAAAGGTAAGATATATTTATTTTGAAATCAGCAGCTCTCAAATAGTCACTTCGTTGTTCCACCTAAAGAGAT	GGCTGTAAAGGTAAGATATATTTATTTTGAAATCAGCAGCTCTCAAATAGTCACTTCGTTGTTCCACCTAAAGAGAT	-			P-0017752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	113	246	0	ENST00000218089.9:c.377_385+68del		p.X126_splice	ENST00000218089	NM_001042749.1	126																																																																																
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0024649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	600	582	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120491740	120491740	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	182	415	1	ENST00000256646.2:c.2489G>T	p.Cys830Phe	p.C830F	ENST00000256646	NM_024408.3	830	tGt/tTt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78857674	78857674	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748286798		P-0024649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	371	934	0	ENST00000306801.3:c.1744G>A	p.Gly582Ser	p.G582S	ENST00000306801	NM_020761.2	582	Ggc/Agc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	671	824	0	ENST00000326873.7:c.836_837insA	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602290	10602290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	702	927	2	ENST00000171111.5:c.1288G>A	p.Gly430Ser	p.G430S	ENST00000171111	NM_203500.1	430	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753660142		P-0075518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	87	382	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0075518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	92	387	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508903	106508903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	84	398	0	ENST00000359195.3:c.897C>A	p.Asn299Lys	p.N299K	ENST00000359195	NM_002649.2	299	aaC/aaA																																																																															
LATS2	26524	MSKCC	GRCh37	13	21555659	21555659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	108	334	0	ENST00000382592.4:c.2611C>T	p.His871Tyr	p.H871Y	ENST00000382592	NM_014572.2	871	Cat/Tat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241706	55241707	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0075518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	81	357	0	ENST00000275493.2:c.2154_2155delinsTT	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	718	ctGGgc/ctTTgc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372153	45372153	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	88	354	0	ENST00000262160.6:c.1016A>T	p.Tyr339Phe	p.Y339F	ENST00000262160	NM_005901.5	339	tAc/tTc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156535	55156535	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	71	412	0	ENST00000257290.5:c.2936G>T	p.Arg979Leu	p.R979L	ENST00000257290	NM_006206.4	979	cGc/cTc																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68353745	68353745	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	36	292	0	ENST00000487270.1:c.580T>G	p.Ser194Ala	p.S194A	ENST00000487270	NM_133509.3	194	Tct/Gct																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023397	33023397	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	83	407	0	ENST00000300177.4:c.506G>T	p.Arg169Ile	p.R169I	ENST00000300177	NM_001191322.1	169	aGa/aTa																																																																															
APC	324	MSKCC	GRCh37	5	112175164	112175164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	78	365	0	ENST00000257430.4:c.3873G>T	p.Gln1291His	p.Q1291H	ENST00000257430	NM_000038.5	1291	caG/caT																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149499052	149499052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	80	359	0	ENST00000261799.4:c.2776C>A	p.Pro926Thr	p.P926T	ENST00000261799	NM_002609.3	926	Cct/Act																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163519	32163519	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	85	375	0	ENST00000375023.3:c.5707G>C	p.Val1903Leu	p.V1903L	ENST00000375023	NM_004557.3	1903	Gta/Cta																																																																															
MGA	23269	MSKCC	GRCh37	15	42021437	42021437	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	80	349	0	ENST00000219905.7:c.3733G>T	p.Glu1245Ter	p.E1245*	ENST00000219905	NM_001164273.1	1245	Gag/Tag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933988	39933988	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	88	415	0	ENST00000378444.4:c.611A>G	p.Tyr204Cys	p.Y204C	ENST00000378444	NM_001123385.1	204	tAc/tGc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741690	17741690	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	61	354	0	ENST00000250003.3:c.361C>G	p.Arg121Gly	p.R121G	ENST00000250003	NM_002478.4	121	Cgc/Ggc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143033768	143033768	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	48	300	0	ENST00000262992.4:c.2203G>C	p.Glu735Gln	p.E735Q	ENST00000262992	NM_001101669.1	735	Gaa/Caa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964055	28964055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	101	385	0	ENST00000282397.4:c.1847C>T	p.Ser616Phe	p.S616F	ENST00000282397	NM_002019.4	616	tCc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0075353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	514	338	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0075353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	297	586	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0075353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	188	367	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175551	112175552	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0075353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	118	486	0	ENST00000257430.4:c.4260_4261del	p.Ser1421Ter	p.S1421*	ENST00000257430	NM_000038.5	1420	ccCAgt/ccgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971067	21971067	+	synonymous_variant	Silent	SNP	C	C	T			P-0075353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	117	517	0	ENST00000304494.5:c.291G>A	p.Leu97=	p.L97=	ENST00000304494	NM_000077.4	97	ctG/ctA																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8339020	8339020	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs760526678		P-0075353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	130	404	0	ENST00000356435.5:c.5281G>C	p.Glu1761Gln	p.E1761Q	ENST00000356435		1761	Gaa/Caa																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281627	49281627	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			891	99	518	0	ENST00000282018.3:c.674T>A	p.Ile225Asn	p.I225N	ENST00000282018	NM_020377.2	225	aTt/aAt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278077	41278077	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0075353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	128	591	0	ENST00000349496.5:c.1955-2A>C		p.X652_splice	ENST00000349496	NM_001904.3	652																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53230881	53230881	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	387	249	0	ENST00000375401.3:c.1912A>G	p.Arg638Gly	p.R638G	ENST00000375401	NM_004187.3	638	Aga/Gga																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005006	150005006	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	100	513	0	ENST00000253339.5:c.1219C>T	p.Gln407Ter	p.Q407*	ENST00000253339		407	Cag/Tag																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	53	400	2	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602764	10602764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	142	418	0	ENST00000171111.5:c.814C>T	p.Arg272Cys	p.R272C	ENST00000171111	NM_203500.1	272	Cgc/Tgc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032401	10032401	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs78631453		P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	124	413	0	ENST00000330684.3:c.422C>T	p.Thr141Met	p.T141M	ENST00000330684	NM_001134407.1	141	aCg/aTg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729465	41729465	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747474916		P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	95	444	1	ENST00000242208.4:c.1064C>T	p.Pro355Leu	p.P355L	ENST00000242208	NM_002192.2	355	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	170	378	0	ENST00000269305.4:c.734del	p.Gly245AlafsTer2	p.G245Afs*2	ENST00000269305	NM_001126112.2	245	gGc/gc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372160	45372160	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1040132520		P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	94	377	0	ENST00000262160.6:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000262160	NM_005901.5	337	Cgc/Tgc																																																																															
STK40	83931	MSKCC	GRCh37	1	36807505	36807505	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200986219		P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	88	422	0	ENST00000373129.3:c.1159G>A	p.Glu387Lys	p.E387K	ENST00000373129	NM_032017.1	387	Gag/Aag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851324	63851324	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	123	499	0	ENST00000279873.7:c.2102G>T	p.Gly701Val	p.G701V	ENST00000279873	NM_032199.2	701	gGg/gTg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984816	11984816	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	239	364	0	ENST00000353533.5:c.362A>G	p.His121Arg	p.H121R	ENST00000353533	NM_003010.3	121	cAc/cGc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259598	89259598	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	123	416	0	ENST00000336596.2:c.742G>T	p.Gly248Cys	p.G248C	ENST00000336596	NM_005233.5	248	Ggc/Tgc																																																																															
WT1	7490	MSKCC	GRCh37	11	32438046	32438046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	68	345	0	ENST00000332351.3:c.991G>T	p.Gly331Trp	p.G331W	ENST00000332351	NM_024426.4	331	Ggg/Tgg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075239	16075239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	267	450	0	ENST00000268712.3:c.313G>A	p.Glu105Lys	p.E105K	ENST00000268712	NM_006311.3	105	Gaa/Aaa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530141	212530141	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	86	487	0	ENST00000342788.4:c.1778G>C	p.Cys593Ser	p.C593S	ENST00000342788	NM_005235.2	593	tGt/tCt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28592615	28592615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	72	423	0	ENST00000241453.7:c.2530G>T	p.Val844Phe	p.V844F	ENST00000241453	NM_004119.2	844	Gtc/Ttc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467698	66467698	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	165	398	0	ENST00000273854.3:c.571C>A	p.Arg191Ser	p.R191S	ENST00000273854	NM_004439.5	191	Cgt/Agt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55269464	55269464	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	57	598	0	ENST00000275493.2:c.3151G>T	p.Asp1051Tyr	p.D1051Y	ENST00000275493	NM_005228.3	1051	Gat/Tat																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660517	227660517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148431809		P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	91	429	0	ENST00000305123.5:c.2938C>T	p.Arg980Trp	p.R980W	ENST00000305123	NM_005544.2	980	Cgg/Tgg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729986	41729986	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	96	466	0	ENST00000242208.4:c.543C>G	p.His181Gln	p.H181Q	ENST00000242208	NM_002192.2	181	caC/caG																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856540	111856540	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	116	384	0	ENST00000341259.2:c.591G>C	p.Lys197Asn	p.K197N	ENST00000341259	NM_005475.2	197	aaG/aaC																																																																															
POT1	25913	MSKCC	GRCh37	7	124503540	124503540	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	242	402	0	ENST00000357628.3:c.410G>T	p.Arg137Leu	p.R137L	ENST00000357628	NM_015450.2	137	cGt/cTt																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804204	46804204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	97	464	0	ENST00000290295.7:c.803G>T	p.Arg268Leu	p.R268L	ENST00000290295	NM_006361.5	268	cGg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714460	40714460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	126	445	0	ENST00000373198.4:c.3937G>T	p.Gly1313Trp	p.G1313W	ENST00000373198	NM_133170.3	1313	Ggg/Tgg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28674629	28674629	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	104	591	0	ENST00000241453.7:c.19G>C	p.Asp7His	p.D7H	ENST00000241453	NM_004119.2	7	Gac/Cac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66242741	66242741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	159	449	1	ENST00000273854.3:c.1831G>T	p.Ala611Ser	p.A611S	ENST00000273854	NM_004439.5	611	Gct/Tct																																																																															
ATR	545	MSKCC	GRCh37	3	142241629	142241640	+	inframe_deletion	In_Frame_Del	DEL	CTCTTGTTAGCT	CTCTTGTTAGCT	-			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	96	371	0	ENST00000350721.4:c.4196_4207del	p.Glu1399_Arg1402del	p.E1399_R1402del	ENST00000350721	NM_001184.3	1399	gAGCTAACAAGAGct/gct																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17384773	17384773	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	127	404	0	ENST00000359435.4:c.405A>T	p.Lys135Asn	p.K135N	ENST00000359435	NM_001033549.1	135	aaA/aaT																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59926576	59926576	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	108	410	0	ENST00000259008.2:c.421A>T	p.Lys141Ter	p.K141*	ENST00000259008	NM_032043.2	141	Aag/Tag																																																																															
IL7R	3575	MSKCC	GRCh37	5	35861026	35861026	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	116	403	0	ENST00000303115.3:c.155A>T	p.Gln52Leu	p.Q52L	ENST00000303115	NM_002185.3	52	cAg/cTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16248785	16248785	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	68	368	0	ENST00000375759.3:c.1791C>G	p.His597Gln	p.H597Q	ENST00000375759	NM_015001.2	597	caC/caG																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953840	17953840	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067213-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	113	364	0	ENST00000458235.1:c.562G>C	p.Val188Leu	p.V188L	ENST00000458235	NM_000215.3	188	Gtc/Ctc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	178	506	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250870	153250870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	79	305	0	ENST00000281708.4:c.1190G>A	p.Gly397Asp	p.G397D	ENST00000281708	NM_033632.3	397	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974679	21974679	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A	rs864622636		P-0075708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	132	484	0	ENST00000304494.5:c.148C>T	p.Gln50Ter	p.Q50*	ENST00000304494	NM_000077.4	50	Cag/Tag																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206647779	206647779	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	67	425	0	ENST00000367120.3:c.193C>T	p.Gln65Ter	p.Q65*	ENST00000367120	NM_014002.3	65	Cag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108119754	108119754	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	122	373	0	ENST00000278616.4:c.1160A>T	p.Lys387Met	p.K387M	ENST00000278616	NM_000051.3	387	aAg/aTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248351	212248351	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	71	376	1	ENST00000342788.4:c.3916A>T	p.Thr1306Ser	p.T1306S	ENST00000342788	NM_005235.2	1306	Act/Tct																																																																															
JAK2	3717	MSKCC	GRCh37	9	5022010	5022010	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	139	367	0	ENST00000381652.3:c.23T>G	p.Met8Arg	p.M8R	ENST00000381652	NM_004972.3	8	aTg/aGg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95595872	95595872	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	71	258	0	ENST00000343455.3:c.671A>G	p.Gln224Arg	p.Q224R	ENST00000343455	NM_177438.2	224	cAg/cGg																																																																															
CIC	23152	MSKCC	GRCh37	19	42796515	42796515	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	124	444	0	ENST00000575354.2:c.3072C>G	p.Ser1024Arg	p.S1024R	ENST00000575354	NM_015125.3	1024	agC/agG																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93964494	93964494	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	97	397	0	ENST00000369303.4:c.2403G>T	p.Arg801Ser	p.R801S	ENST00000369303	NM_004440.3	801	agG/agT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629762	187629762	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	135	492	0	ENST00000441802.2:c.1220del	p.Gly407GlufsTer7	p.G407Efs*7	ENST00000441802	NM_005245.3	407	gGa/ga																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008051	29008053	+	frameshift_variant	Frame_Shift_Del	DEL	CTG	CTG	TT			P-0075708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	142	470	0	ENST00000282397.4:c.716_718delinsAA	p.Pro239GlnfsTer20	p.P239Qfs*20	ENST00000282397	NM_002019.4	239	cCAGtc/cAAtc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220448	1220448	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			552	91	477	1	ENST00000326873.7:c.541A>T	p.Asn181Tyr	p.N181Y	ENST00000326873	NM_000455.4	181	Aac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0057824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			395	48	392	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29541587	29541587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			201	45	224	0	ENST00000358273.4:c.1511C>T	p.Pro504Leu	p.P504L	ENST00000358273	NM_001042492.2	504	cCa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7590693	7590693	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0057824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			517	100	366	0	ENST00000269305.4:c.-29+2T>A		p.X10_splice	ENST00000269305	NM_001126112.2	10																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0072849-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			761	597	390	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579361	7579361	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0072849-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			276	254	466	0	ENST00000269305.4:c.326T>G	p.Phe109Cys	p.F109C	ENST00000269305	NM_001126112.2	109	tTc/tGc																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480062	50480062	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs936279527		P-0072849-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			761	79	450	0	ENST00000394963.4:c.296C>T	p.Ser99Phe	p.S99F	ENST00000394963	NM_003076.4	99	tCc/tTc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900356	101900356	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072849-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			169	238	207	0	ENST00000374994.4:c.790G>C	p.Ala264Pro	p.A264P	ENST00000374994	NM_004612.2	264	Gca/Cca																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876359	35876359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072849-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			571	109	428	0	ENST00000303115.3:c.1151C>T	p.Ser384Phe	p.S384F	ENST00000303115	NM_002185.3	384	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577140	7577141	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	A			P-0073516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	112	501	0	ENST00000269305.4:c.797_798delinsT	p.Gly266ValfsTer79	p.G266Vfs*79	ENST00000269305	NM_001126112.2	266	gGA/gT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0074179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			616	52	326	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0074179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			684	55	430	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																															
CBL	867	MSKCC	GRCh37	11	119169179	119169179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150811339		P-0074179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			790	43	403	0	ENST00000264033.4:c.2363G>A	p.Arg788Gln	p.R788Q	ENST00000264033	NM_005188.3	788	cGa/cAa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602767	10602767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			693	84	443	0	ENST00000171111.5:c.811G>T	p.Val271Leu	p.V271L	ENST00000171111	NM_203500.1	271	Gtg/Ttg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967971	93967971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1206076675		P-0074179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			346	22	320	0	ENST00000369303.4:c.1956G>C	p.Leu652Phe	p.L652F	ENST00000369303	NM_004440.3	652	ttG/ttC																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423781	47423781	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0074179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			665	45	378	0	ENST00000404338.3:c.1849C>T	p.Arg617Ter	p.R617*	ENST00000404338	NM_004491.4	617	Cga/Tga																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29280037	29280037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			707	50	480	0	ENST00000544604.2:c.283G>A	p.Glu95Lys	p.E95K	ENST00000544604	NM_001206998.1	95	Gag/Aag																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78704359	78704359	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0074179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			632	38	316	0	ENST00000306801.3:c.508-1G>A		p.X170_splice	ENST00000306801	NM_020761.2	170																																																																																
NUF2	83540	MSKCC	GRCh37	1	163313656	163313656	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	16	193	0	ENST00000271452.3:c.803C>A	p.Ala268Asp	p.A268D	ENST00000271452	NM_145697.2	268	gCc/gAc																																																																															
RRAS	6237	MSKCC	GRCh37	19	50139890	50139890	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			673	36	338	0	ENST00000246792.3:c.439G>C	p.Glu147Gln	p.E147Q	ENST00000246792	NM_006270.3	147	Gag/Cag																																																																															
ATRX	546	MSKCC	GRCh37	X	76938161	76938161	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			366	22	335	0	ENST00000373344.5:c.2587C>G	p.Gln863Glu	p.Q863E	ENST00000373344	NM_000489.3	863	Caa/Gaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197780	66197780	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			400	36	355	0	ENST00000273854.3:c.2919G>C	p.Trp973Cys	p.W973C	ENST00000273854	NM_004439.5	973	tgG/tgC																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026498	48026498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			775	44	397	0	ENST00000234420.5:c.1376C>T	p.Ser459Phe	p.S459F	ENST00000234420	NM_000179.2	459	tCt/tTt																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21346118	21346118	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0074179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			597	56	394	0	ENST00000215739.8:c.993G>C	p.Glu331Asp	p.E331D	ENST00000215739	NM_006767.3	331	gaG/gaC																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27840077	27840078	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCTTTGTTC			P-0074179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			852	71	450	0	ENST00000328488.2:c.8_16dup	p.Arg3_Lys5dup	p.R3_K5dup	ENST00000328488	NM_003533.2	3	caa/cGAACAAAGCaa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11303227	11303228	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			398	36	526	1	ENST00000361445.4:c.1355dup	p.Leu452PhefsTer20	p.L452Ffs*20	ENST00000361445	NM_004958.3	452	ttg/ttTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092742	27092743	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			320	36	424	0	ENST00000324856.7:c.2763_2764insT	p.Gly922TrpfsTer14	p.G922Wfs*14	ENST00000324856	NM_006015.4	921	-/T																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106528	27106528	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			400	77	603	0	ENST00000324856.7:c.6139G>T	p.Glu2047Ter	p.E2047*	ENST00000324856	NM_006015.4	2047	Gag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108192044	108192044	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			266	66	289	0	ENST00000278616.4:c.6469G>T	p.Glu2157Ter	p.E2157*	ENST00000278616	NM_000051.3	2157	Gag/Tag																																																																															
CBL	867	MSKCC	GRCh37	11	119169104	119169104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			426	67	489	0	ENST00000264033.4:c.2288G>T	p.Gly763Val	p.G763V	ENST00000264033	NM_005188.3	763	gGt/gTt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625094	69625094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			286	51	426	0	ENST00000334134.2:c.699G>T	p.Gln233His	p.Q233H	ENST00000334134	NM_005247.2	233	caG/caT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438589	49438589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			357	67	412	0	ENST00000301067.7:c.4901C>T	p.Ala1634Val	p.A1634V	ENST00000301067	NM_003482.3	1634	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579546	7579547	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			283	130	571	0	ENST00000269305.4:c.140dup	p.Asp48GlyfsTer4	p.D48Gfs*4	ENST00000269305	NM_001126112.2	47	ccg/ccCg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610235	10610235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			263	81	571	0	ENST00000171111.5:c.475G>A	p.Ala159Thr	p.A159T	ENST00000171111	NM_203500.1	159	Gct/Act																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11172463	11172463	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776222414		P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	96	384	0	ENST00000344626.4:c.4915C>T	p.Arg1639Cys	p.R1639C	ENST00000344626	NM_003072.3	1639	Cgc/Tgc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17951086	17951086	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1257606008		P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			258	98	359	0	ENST00000458235.1:c.1207C>T	p.Arg403Cys	p.R403C	ENST00000458235	NM_000215.3	403	Cgc/Tgc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488692	212488692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			367	36	466	0	ENST00000342788.4:c.2157G>T	p.Lys719Asn	p.K719N	ENST00000342788	NM_005235.2	719	aaG/aaT																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31019389	31019389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			375	94	439	0	ENST00000375687.4:c.886G>A	p.Gly296Arg	p.G296R	ENST00000375687	NM_015338.5	296	Ggg/Agg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827977	40827977	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			439	52	460	0	ENST00000373198.4:c.2451G>T	p.Met817Ile	p.M817I	ENST00000373198	NM_133170.3	817	atG/atT																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42852428	42852428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			386	58	505	0	ENST00000398585.3:c.658G>T	p.Ala220Ser	p.A220S	ENST00000398585	NM_001135099.1	220	Gcg/Tcg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664760	138664761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			230	57	371	0	ENST00000330315.3:c.804_805insA	p.Gly269ArgfsTer265	p.G269Rfs*265	ENST00000330315	NM_023067.3	268	-/A																																																																															
KIT	3815	MSKCC	GRCh37	4	55565885	55565885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			242	94	372	0	ENST00000288135.5:c.709G>T	p.Asp237Tyr	p.D237Y	ENST00000288135	NM_000222.2	237	Gat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112103011	112103011	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			340	78	378	0	ENST00000257430.4:c.346G>C	p.Gly116Arg	p.G116R	ENST00000257430	NM_000038.5	116	Ggt/Cgt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509533	106509533	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs140765012		P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			379	67	491	0	ENST00000359195.3:c.1527C>A	p.Asp509Glu	p.D509E	ENST00000359195	NM_002649.2	509	gaC/gaA																																																																															
SMO	6608	MSKCC	GRCh37	7	128843419	128843419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			334	52	433	0	ENST00000249373.3:c.526G>A	p.Glu176Lys	p.E176K	ENST00000249373	NM_005631.4	176	Gaa/Aaa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459467	50459467	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			317	39	420	0	ENST00000331340.3:c.756C>G	p.Asp252Glu	p.D252E	ENST00000331340	NM_006060.4	252	gaC/gaG																																																																															
HGF	3082	MSKCC	GRCh37	7	81392129	81392129	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			161	23	376	0	ENST00000222390.5:c.148C>A	p.Leu50Ile	p.L50I	ENST00000222390	NM_000601.4	50	Cta/Ata																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931969	39931969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			338	29	454	0	ENST00000378444.4:c.2630C>A	p.Thr877Asn	p.T877N	ENST00000378444	NM_001123385.1	877	aCc/aAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254939	16254939	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			462	44	489	1	ENST00000375759.3:c.2204A>G	p.Gln735Arg	p.Q735R	ENST00000375759	NM_015001.2	735	cAg/cGg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598233	28598233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			352	101	495	0	ENST00000253063.3:c.205G>T	p.Ala69Ser	p.A69S	ENST00000253063	NM_031459.4	69	Gca/Tca																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932020	36932020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			431	46	615	0	ENST00000361632.4:c.2449C>A	p.Leu817Ile	p.L817I	ENST00000361632		817	Ctc/Atc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104356964	104356964	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			301	81	382	0	ENST00000369902.3:c.824G>T	p.Trp275Leu	p.W275L	ENST00000369902	NM_016169.3	275	tGg/tTg																																																																															
RET	5979	MSKCC	GRCh37	10	43610036	43610036	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			362	67	619	0	ENST00000355710.3:c.1988T>G	p.Phe663Cys	p.F663C	ENST00000355710	NM_020975.4	663	tTt/tGt																																																																															
APLNR	187	MSKCC	GRCh37	11	57003967	57003967	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			377	56	487	0	ENST00000257254.3:c.512G>T	p.Gly171Val	p.G171V	ENST00000257254		171	gGg/gTg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572171	64572171	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			299	66	532	0	ENST00000337652.1:c.1483G>C	p.Glu495Gln	p.E495Q	ENST00000337652	NM_130803.2	495	Gag/Cag																																																																															
CCND2	894	MSKCC	GRCh37	12	4398134	4398134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			291	60	384	0	ENST00000261254.3:c.698C>T	p.Ala233Val	p.A233V	ENST00000261254	NM_001759.3	233	gCt/gTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444374	49444374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			425	103	677	0	ENST00000301067.7:c.2997G>T	p.Met999Ile	p.M999I	ENST00000301067	NM_003482.3	999	atG/atT																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489574	56489574	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			437	83	462	0	ENST00000267101.3:c.2039A>T	p.Tyr680Phe	p.Y680F	ENST00000267101	NM_001982.3	680	tAc/tTc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864739	57864739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			434	74	551	0	ENST00000228682.2:c.2216C>T	p.Ala739Val	p.A739V	ENST00000228682	NM_005269.2	739	gCa/gTa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865309	57865309	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			352	71	484	0	ENST00000228682.2:c.2786A>T	p.Lys929Met	p.K929M	ENST00000228682	NM_005269.2	929	aAg/aTg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41239883	41239883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			209	19	338	0	ENST00000379561.5:c.467G>T	p.Arg156Leu	p.R156L	ENST00000379561	NM_002015.3	156	cGc/cTc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609381	81609381	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	77	424	0	ENST00000298171.2:c.979G>C	p.Glu327Gln	p.E327Q	ENST00000298171	NM_000369.2	327	Gaa/Caa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43784251	43784251	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			266	33	398	0	ENST00000382044.4:c.235G>C	p.Gly79Arg	p.G79R	ENST00000382044	NM_001141980.1	79	Gga/Cga																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628269	90628270	+	missense_variant	Missense_Mutation	DNP	TG	TG	AA			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			522	95	607	0	ENST00000330062.3:c.1141_1142delinsTT	p.His381Phe	p.H381F	ENST00000330062	NM_002168.2	381	CAc/TTc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99486167	99486167	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			358	79	455	0	ENST00000268035.6:c.3473G>T	p.Arg1158Leu	p.R1158L	ENST00000268035	NM_000875.3	1158	cGa/cTa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99491811	99491811	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	74	416	0	ENST00000268035.6:c.3596G>T	p.Gly1199Val	p.G1199V	ENST00000268035	NM_000875.3	1199	gGg/gTg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671683	67671683	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			396	91	502	0	ENST00000264010.4:c.2092G>C	p.Glu698Gln	p.E698Q	ENST00000264010	NM_006565.3	698	Gag/Cag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81925196	81925196	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			308	74	336	0	ENST00000359376.3:c.986+1G>T		p.X329_splice	ENST00000359376	NM_002661.3	329																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81954827	81954827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			321	55	390	0	ENST00000359376.3:c.2260G>T	p.Asp754Tyr	p.D754Y	ENST00000359376	NM_002661.3	754	Gac/Tac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892238	9892238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			403	90	521	0	ENST00000330684.3:c.2252G>T	p.Gly751Val	p.G751V	ENST00000330684	NM_001134407.1	751	gGg/gTg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17127282	17127282	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			313	76	462	0	ENST00000285071.4:c.572G>C	p.Gly191Ala	p.G191A	ENST00000285071	NM_144997.5	191	gGg/gCg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119981	70119981	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			307	83	490	0	ENST00000245479.2:c.983C>A	p.Pro328Gln	p.P328Q	ENST00000245479	NM_000346.3	328	cCg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			407	63	720	0	ENST00000222270.7:c.5631G>T	p.Leu1877Phe	p.L1877F	ENST00000222270	NM_014727.1	1877	ttG/ttT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223461	36223461	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			406	43	668	0	ENST00000222270.7:c.6011A>G	p.Gln2004Arg	p.Q2004R	ENST00000222270	NM_014727.1	2004	cAg/cGg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867094	45867094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			379	39	483	2	ENST00000391945.4:c.1025G>T	p.Trp342Leu	p.W342L	ENST00000391945	NM_000400.3	342	tGg/tTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663001	227663001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			299	40	466	0	ENST00000305123.5:c.454G>A	p.Gly152Ser	p.G152S	ENST00000305123	NM_005544.2	152	Ggt/Agt																																																																															
ALK	238	MSKCC	GRCh37	2	29519783	29519783	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			383	32	440	0	ENST00000389048.3:c.1788G>T	p.Met596Ile	p.M596I	ENST00000389048	NM_004304.4	596	atG/atT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40979303	40979303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			400	71	429	0	ENST00000373198.4:c.1830G>A	p.Met610Ile	p.M610I	ENST00000373198	NM_133170.3	610	atG/atA																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264100	46264100	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			277	50	399	0	ENST00000371998.3:c.1147G>T	p.Val383Phe	p.V383F	ENST00000371998		383	Gtt/Ttt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44515836	44515836	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			255	24	313	0	ENST00000291552.4:c.217G>T	p.Glu73Ter	p.E73*	ENST00000291552	NM_006758.2	73	Gag/Tag																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21349017	21349017	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			345	134	556	0	ENST00000215739.8:c.1785+1G>A		p.X595_splice	ENST00000215739	NM_006767.3	595																																																																																
SMARCB1	6598	MSKCC	GRCh37	22	24129380	24129380	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			206	66	319	0	ENST00000263121.7:c.24G>C	p.Lys8Asn	p.K8N	ENST00000263121	NM_003073.3	8	aaG/aaC																																																																															
ATR	545	MSKCC	GRCh37	3	142281572	142281572	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			198	41	339	0	ENST00000350721.4:c.672G>T	p.Arg224Ser	p.R224S	ENST00000350721	NM_001184.3	224	agG/agT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162977	47162977	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			224	22	395	0	ENST00000409792.3:c.3149A>T	p.Asp1050Val	p.D1050V	ENST00000409792	NM_014159.6	1050	gAt/gTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164276	47164276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			134	25	424	0	ENST00000409792.3:c.1850C>T	p.Pro617Leu	p.P617L	ENST00000409792	NM_014159.6	617	cCa/cTa																																																																															
TET2	54790	MSKCC	GRCh37	4	106157161	106157161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	124	459	0	ENST00000380013.4:c.2062G>T	p.Asp688Tyr	p.D688Y	ENST00000380013	NM_001127208.2	688	Gat/Tat																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143045802	143045802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			318	134	393	0	ENST00000262992.4:c.1832C>G	p.Ala611Gly	p.A611G	ENST00000262992	NM_001101669.1	611	gCg/gGg																																																																															
TERT	7015	MSKCC	GRCh37	5	1282558	1282559	+	missense_variant	Missense_Mutation	DNP	TT	TT	GC			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			395	79	468	1	ENST00000310581.5:c.1754_1755delinsGC	p.Gln585Arg	p.Q585R	ENST00000310581	NM_198253.2	585	cAA/cGC																																																																															
RAD50	10111	MSKCC	GRCh37	5	131915600	131915600	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			81	16	289	0	ENST00000265335.6:c.598G>T	p.Gly200Cys	p.G200C	ENST00000265335		200	Ggt/Tgt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149452916	149452916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1469011087		P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	87	482	0	ENST00000286301.3:c.1030G>A	p.Asp344Asn	p.D344N	ENST00000286301	NM_005211.3	344	Gac/Aac																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524319	176524319	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			427	99	504	0	ENST00000292408.4:c.2180A>T	p.His727Leu	p.H727L	ENST00000292408	NM_213647.1	727	cAc/cTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180040020	180040020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	98	478	0	ENST00000261937.6:c.3422C>A	p.Thr1141Asn	p.T1141N	ENST00000261937	NM_182925.4	1141	aCt/aAt																																																																															
SDHA	6389	MSKCC	GRCh37	5	233591	233591	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			148	38	196	0	ENST00000264932.6:c.896-1G>T		p.X299_splice	ENST00000264932	NM_004168.2	299																																																																																
RICTOR	253260	MSKCC	GRCh37	5	38954950	38954950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			161	31	304	0	ENST00000357387.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000357387	NM_152756.3	875	Cac/Tac																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004447	150004447	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			262	31	469	0	ENST00000253339.5:c.1778G>T	p.Ser593Ile	p.S593I	ENST00000253339		593	aGt/aTt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157454257	157454257	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			396	83	450	0	ENST00000346085.5:c.2467C>T	p.Gln823Ter	p.Q823*	ENST00000346085	NM_020732.3	823	Cag/Tag																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020873	26020873	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			728	45	720	0	ENST00000357647.3:c.156C>G	p.Ile52Met	p.I52M	ENST00000357647	NM_003529.2	52	atC/atG																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679723	30679723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			354	324	566	0	ENST00000376406.3:c.1996G>T	p.Ala666Ser	p.A666S	ENST00000376406	NM_014641.2	666	Gcc/Tcc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323117	31323117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			465	277	756	0	ENST00000412585.2:c.872C>T	p.Pro291Leu	p.P291L	ENST00000412585	NM_005514.6	291	cCg/cTg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187980	32187980	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			428	45	553	0	ENST00000375023.3:c.1241G>T	p.Gly414Val	p.G414V	ENST00000375023	NM_004557.3	414	gGc/gTc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148511214	148511214	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			423	78	409	0	ENST00000320356.2:c.1688C>G	p.Pro563Arg	p.P563R	ENST00000320356	NM_004456.4	563	cCg/cGg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148512030	148512030	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			290	52	385	0	ENST00000320356.2:c.1648A>T	p.Lys550Ter	p.K550*	ENST00000320356	NM_004456.4	550	Aag/Tag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2958126	2958126	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			322	56	404	0	ENST00000396946.4:c.2606G>T	p.Arg869Leu	p.R869L	ENST00000396946	NM_032415.4	869	cGg/cTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959074	2959074	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	75	476	0	ENST00000396946.4:c.2442G>T	p.Trp814Cys	p.W814C	ENST00000396946	NM_032415.4	814	tgG/tgT																																																																															
RAD21	5885	MSKCC	GRCh37	8	117870635	117870635	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			195	24	314	0	ENST00000297338.2:c.437G>T	p.Arg146Ile	p.R146I	ENST00000297338	NM_006265.2	146	aGa/aTa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981738	70981738	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			312	71	408	0	ENST00000276594.2:c.358G>T	p.Glu120Ter	p.E120*	ENST00000276594	NM_024504.3	120	Gag/Tag																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101910067	101910067	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			113	15	309	0	ENST00000374994.4:c.1386+1G>C		p.X462_splice	ENST00000374994	NM_004612.2	462																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8499652	8499652	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			406	72	385	0	ENST00000356435.5:c.2317G>C	p.Ala773Pro	p.A773P	ENST00000356435		773	Gca/Cca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504371	8504371	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			334	59	345	0	ENST00000356435.5:c.1712G>C	p.Arg571Thr	p.R571T	ENST00000356435		571	aGg/aCg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39916506	39916506	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			354	36	432	0	ENST00000378444.4:c.4497C>A	p.Cys1499Ter	p.C1499*	ENST00000378444	NM_001123385.1	1499	tgC/tgA																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039320	47039320	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			300	75	577	0	ENST00000329236.7:c.712T>C	p.Ser238Pro	p.S238P	ENST00000329236	NM_001204466.1	238	Tcc/Ccc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228282	53228282	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075083-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	54	512	0	ENST00000375401.3:c.2120G>T	p.Cys707Phe	p.C707F	ENST00000375401	NM_004187.3	707	tGt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0075312-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	170	566	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134356	2134356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075312-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	107	600	0	ENST00000219476.3:c.4133C>T	p.Pro1378Leu	p.P1378L	ENST00000219476	NM_000548.3	1378	cCc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0075372-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			373	108	416	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0075372-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			356	58	339	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0075372-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			282	56	252	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0075372-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			364	38	381	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591125	67591125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075372-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			387	68	376	0	ENST00000274335.5:c.1718T>C	p.Leu573Pro	p.L573P	ENST00000274335		573	cTg/cCg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546560	9546560	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771840400		P-0075372-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			494	38	409	0	ENST00000353224.5:c.1462C>T	p.Arg488Ter	p.R488*	ENST00000353224	NM_177990.2	488	Cga/Tga																																																																															
AR	367	MSKCC	GRCh37	X	66766384	66766384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075372-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			180	16	334	0	ENST00000374690.3:c.1396G>A	p.Gly466Ser	p.G466S	ENST00000374690	NM_000044.3	466	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075372-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	42	323	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098910	47098910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075372-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			375	183	439	0	ENST00000409792.3:c.6364C>T	p.Arg2122Trp	p.R2122W	ENST00000409792	NM_014159.6	2122	Cgg/Tgg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530190	63530190	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075372-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			356	78	354	0	ENST00000307078.5:c.2245G>T	p.Glu749Ter	p.E749*	ENST00000307078	NM_004655.3	749	Gag/Tag																																																																															
AKT2	208	MSKCC	GRCh37	19	40743973	40743973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775105991		P-0075372-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			461	82	537	0	ENST00000392038.2:c.734G>A	p.Arg245His	p.R245H	ENST00000392038	NM_001626.4	245	cGt/cAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710596	114710596	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075372-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			451	122	489	0	ENST00000543371.1:c.82del	p.Glu28ArgfsTer14	p.E28Rfs*14	ENST00000543371	NM_001198531.1	27	caG/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519985		P-0075658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	187	475	0	ENST00000269305.4:c.857A>G	p.Glu286Gly	p.E286G	ENST00000269305	NM_001126112.2	286	gAa/gGa																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793316	33793346	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	TCCATGGGGGAGTTAGAGTTCTCCCGGCATG	TCCATGGGGGAGTTAGAGTTCTCCCGGCATG	-			P-0075658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	51	292	0	ENST00000498907.2:c.-26_5del		p.*9*	ENST00000498907	NM_004364.3																																																																																	
MSH6	2956	MSKCC	GRCh37	2	48032091	48032091	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	91	399	0	ENST00000234420.5:c.3481C>A	p.Pro1161Thr	p.P1161T	ENST00000234420	NM_000179.2	1161	Cct/Act																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928065	178928094	+	inframe_deletion	In_Frame_Del	DEL	TACCTCATGGATTAGAAGATTTGCTGAACC	TACCTCATGGATTAGAAGATTTGCTGAACC	-			P-0075658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	396	344	0	ENST00000263967.3:c.1343_1372del	p.Val448_Pro458delinsAla	p.V448_P458delinsA	ENST00000263967	NM_006218.2	448	gTACCTCATGGATTAGAAGATTTGCTGAACCct/gct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0075813-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			441	193	394	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679234	30679234	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075813-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			614	94	367	0	ENST00000376406.3:c.2176C>G	p.Pro726Ala	p.P726A	ENST00000376406	NM_014641.2	726	Cca/Gca																																																																															
HGF	3082	MSKCC	GRCh37	7	81332070	81332070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075813-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			422	136	301	0	ENST00000222390.5:c.2014G>A	p.Asp672Asn	p.D672N	ENST00000222390	NM_000601.4	672	Gat/Aat																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228321	53228321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075813-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	76	178	0	ENST00000375401.3:c.2081G>A	p.Arg694Gln	p.R694Q	ENST00000375401	NM_004187.3	694	cGa/cAa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864663	68864663	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773560075		P-0075813-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			440	47	193	0	ENST00000288368.4:c.34G>A	p.Glu12Lys	p.E12K	ENST00000288368	NM_024870.2	12	Gag/Aag																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31388699	31388699	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0075813-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			573	79	358	0	ENST00000328111.2:c.1964C>G	p.Ser655Ter	p.S655*	ENST00000328111	NM_006892.3	655	tCa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075813-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	338	235	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295351	1295351	+	upstream_gene_variant	5'Flank	SNP	G	G	C			P-0075813-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			721	73	379	0				ENST00000310581	NM_198253.2																																																																																	
ATM	472	MSKCC	GRCh37	11	108216496	108216496	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075813-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			431	53	262	0	ENST00000278616.4:c.8445G>C	p.Glu2815Asp	p.E2815D	ENST00000278616	NM_000051.3	2815	gaG/gaC																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2060912	2060912	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075813-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			449	228	419	0	ENST00000349721.2:c.1618C>G	p.Leu540Val	p.L540V	ENST00000349721	NM_003070.3	540	Ctg/Gtg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128230261	128230261	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075813-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			604	90	351	0	ENST00000265960.3:c.1335G>C	p.Glu445Asp	p.E445D	ENST00000265960	NM_001006617.1	445	gaG/gaC																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31493370	31493370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075813-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			624	249	302	0	ENST00000344624.3:c.1786G>A	p.Asp596Asn	p.D596N	ENST00000344624		596	Gat/Aat																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813330	102813330	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075813-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			599	85	333	0	ENST00000307046.8:c.359C>G	p.Ser120Cys	p.S120C	ENST00000307046	NM_001111285.1	120	tCt/tGt																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025579	1025580	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0075813-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			495	173	404	0	ENST00000358495.3:c.795_796del	p.Gln266AlafsTer19	p.Q266Afs*19	ENST00000358495	NM_134424.2	265	caGCag/caag																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2110388	2110388	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075813-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			358	135	319	0	ENST00000349721.2:c.3427A>T	p.Ile1143Phe	p.I1143F	ENST00000349721	NM_003070.3	1143	Atc/Ttc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185169088	185169088	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075813-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			577	89	303	0	ENST00000265026.3:c.1183C>G	p.Arg395Gly	p.R395G	ENST00000265026	NM_004721.4	395	Cga/Gga																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434428	121434428	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075813-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			556	167	359	0	ENST00000257555.6:c.1192C>G	p.Gln398Glu	p.Q398E	ENST00000257555		398	Cag/Gag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662537	227662537	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075813-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			477	175	374	0	ENST00000305123.5:c.918G>T	p.Glu306Asp	p.E306D	ENST00000305123	NM_005544.2	306	gaG/gaT																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206666452	206666452	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0075813-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			644	156	407	0	ENST00000367120.3:c.1932G>C	p.Lys644Asn	p.K644N	ENST00000367120	NM_014002.3	644	aaG/aaC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32945171	32945171	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075813-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			369	54	322	0	ENST00000380152.3:c.8566G>C	p.Glu2856Gln	p.E2856Q	ENST00000380152		2856	Gag/Cag																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446222	29446222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075813-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			441	60	340	0	ENST00000544604.2:c.2053G>A	p.Val685Met	p.V685M	ENST00000544604	NM_001206998.1	685	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0075848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	136	527	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																															
TP63	8626	MSKCC	GRCh37	3	189582168	189582168	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121908835		P-0075848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	306	437	0	ENST00000264731.3:c.727C>T	p.Arg243Trp	p.R243W	ENST00000264731	NM_003722.4	243	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0075848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	143	320	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0075850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	77	326	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0075850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	128	260	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714628	52714628	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	78	345	0	ENST00000322088.6:c.386T>A	p.Val129Glu	p.V129E	ENST00000322088	NM_014225.5	129	gTg/gAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492892	56492892	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	152	331	0	ENST00000407977.2:c.47T>G	p.Leu16Arg	p.L16R	ENST00000407977		16	cTg/cGg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686319	30686319	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	109	356	0	ENST00000359013.4:c.250T>C	p.Ser84Pro	p.S84P	ENST00000359013	NM_001024847.2	84	Tcc/Ccc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732982	30732983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0075850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	71	389	0	ENST00000359013.4:c.1671dup	p.Cys558ValfsTer8	p.C558Vfs*8	ENST00000359013	NM_001024847.2	557	cag/caGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0075854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	34	273	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528595	157528595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781613431		P-0075854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	16	462	0	ENST00000346085.5:c.6320G>A	p.Arg2107His	p.R2107H	ENST00000346085	NM_020732.3	2107	cGt/cAt																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630958	67630958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	11	399	0	ENST00000272342.5:c.1144G>A	p.Asp382Asn	p.D382N	ENST00000272342	NM_019002.3	382	Gat/Aat																																																																															
IGF1	3479	MSKCC	GRCh37	12	102869477	102869477	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	28	356	0	ENST00000307046.8:c.164G>T	p.Gly55Val	p.G55V	ENST00000307046	NM_001111285.1	55	gGg/gTg																																																																															
GAB1	2549	MSKCC	GRCh37	4	144354662	144354662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	38	303	0	ENST00000262994.4:c.386G>T	p.Gly129Val	p.G129V	ENST00000262994	NM_002039.3	129	gGc/gTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039379	47039380	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0075854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	37	435	0	ENST00000329236.7:c.772_773del	p.Lys258GlyfsTer44	p.K258Gfs*44	ENST00000329236	NM_001204466.1	257	atAAag/atag																																																																															
ABL1	25	MSKCC	GRCh37	9	133750361	133750361	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	30	392	0	ENST00000318560.5:c.1192G>T	p.Gly398Ter	p.G398*	ENST00000318560	NM_005157.4	398	Gga/Tga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123650	11123650	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140016398		P-0075854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	41	417	0	ENST00000344626.4:c.2300C>T	p.Ser767Phe	p.S767F	ENST00000344626	NM_003072.3	767	tCc/tTc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099785	157099807	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCGGCCCCGGCGGCCGCGCT	GCGGCGGCCCCGGCGGCCGCGCT	-			P-0075854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	10	227	0	ENST00000346085.5:c.723_745del	p.Ser241ArgfsTer5	p.S241Rfs*5	ENST00000346085	NM_020732.3	241	aGCGGCGGCCCCGGCGGCCGCGCT/a																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600008	10600009	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0075854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	49	463	0	ENST00000171111.5:c.1567_1568delinsTT	p.Gly523Leu	p.G523L	ENST00000171111	NM_203500.1	523	GGg/TTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220394	1220395	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0075854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	34	408	0	ENST00000326873.7:c.487_488delinsCT	p.Gly163Leu	p.G163L	ENST00000326873	NM_000455.4	163	GGc/CTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0075856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	275	509	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390737	139390737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	61	529	0	ENST00000277541.6:c.7454C>T	p.Pro2485Leu	p.P2485L	ENST00000277541	NM_017617.3	2485	cCc/cTc																																																																															
ALB	213	MSKCC	GRCh37	4	74283989	74283989	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	101	356	0	ENST00000295897.4:c.1613G>C	p.Cys538Ser	p.C538S	ENST00000295897	NM_000477.5	538	tGc/tCc																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2489798	2489798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	97	444	0	ENST00000355716.4:c.195G>T	p.Glu65Asp	p.E65D	ENST00000355716	NM_003820.2	65	gaG/gaT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0075857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			33	21	241	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68856029	68856038	+	frameshift_variant	Frame_Shift_Del	DEL	AACATCATTG	AACATCATTG	-			P-0075857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			44	27	509	0	ENST00000261769.5:c.1838_1847del	p.Asn613MetfsTer15	p.N613Mfs*15	ENST00000261769	NM_004360.3	613	AACATCATTGat/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0075858-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	88	495	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0075858-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	160	494	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
ARAF	369	MSKCC	GRCh37	X	47429325	47429325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075858-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	26	248	0	ENST00000377045.4:c.1453C>T	p.Pro485Ser	p.P485S	ENST00000377045	NM_001654.4	485	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578231	7578232	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAAT			P-0075909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			752	58	419	0	ENST00000269305.4:c.614_617dup	p.Asp207PhefsTer3	p.D207Ffs*3	ENST00000269305	NM_001126112.2	206	ttg/ttATTTg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58678170	58678170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	39	348	0	ENST00000305921.3:c.395C>T	p.Ser132Leu	p.S132L	ENST00000305921	NM_003620.3	132	tCg/tTg																																																																															
SYK	6850	MSKCC	GRCh37	9	93607728	93607728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	41	316	0	ENST00000375746.1:c.430G>A	p.Glu144Lys	p.E144K	ENST00000375746	NM_001174167.1	144	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0075909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	31	212	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060758	38060758	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075912-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	265	577	0	ENST00000250448.2:c.1231C>G	p.Gln411Glu	p.Q411E	ENST00000250448	NM_004496.3	411	Cag/Gag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696450	47696450	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075916-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	64	420	0	ENST00000347630.2:c.373T>A	p.Phe125Ile	p.F125I	ENST00000347630	NM_001007230.1	125	Ttt/Att																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125499313	125499313	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075916-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	84	264	0	ENST00000428830.2:c.382C>A	p.His128Asn	p.H128N	ENST00000428830	NM_001114121.2	128	Cac/Aac																																																																															
MALT1	10892	MSKCC	GRCh37	18	56414701	56414701	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075916-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	66	389	0	ENST00000348428.3:c.2102A>G	p.Asp701Gly	p.D701G	ENST00000348428	NM_006785.3	701	gAc/gGc																																																																															
APC	324	MSKCC	GRCh37	5	112175550	112175557	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGTGAT	CCAGTGAT	A			P-0075916-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	84	533	0	ENST00000257430.4:c.4259_4266delinsA	p.Pro1420HisfsTer51	p.P1420Hfs*51	ENST00000257430	NM_000038.5	1420	cCCAGTGAT/cA																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0075918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	17	336	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0075918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	21	279	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0075918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	10	316	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	341	388	0	ENST00000267101.3:c.310G>C	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ctg																																																																															
EP300	2033	MSKCC	GRCh37	22	41565575	41565575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	267	284	0	ENST00000263253.7:c.4241A>G	p.Tyr1414Cys	p.Y1414C	ENST00000263253	NM_001429.3	1414	tAt/tGt																																																																															
ALK	238	MSKCC	GRCh37	2	29451773	29451773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	235	347	0	ENST00000389048.3:c.2792G>T	p.Gly931Val	p.G931V	ENST00000389048	NM_004304.4	931	gGt/gTt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098816	178098816	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	337	350	0	ENST00000397062.3:c.229G>T	p.Asp77Tyr	p.D77Y	ENST00000397062	NM_006164.4	77	Gat/Tat																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143181719	143181719	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0075919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	438	200	0	ENST00000262992.4:c.616-2A>T		p.X206_splice	ENST00000262992	NM_001101669.1	206																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0075919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	214	253	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
AXL	558	MSKCC	GRCh37	19	41725331	41725331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	309	365	0	ENST00000301178.4:c.34C>A	p.Pro12Thr	p.P12T	ENST00000301178	NM_021913.4	12	Ccg/Acg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508239	106508239	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	345	430	0	ENST00000359195.3:c.233C>G	p.Ala78Gly	p.A78G	ENST00000359195	NM_002649.2	78	gCg/gGg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845655	72845655	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0075919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	38	388	1	ENST00000268489.5:c.3685A>T	p.Lys1229Ter	p.K1229*	ENST00000268489	NM_006885.3	1229	Aag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151871261	151871261	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	279	276	0	ENST00000262189.6:c.9329T>C	p.Val3110Ala	p.V3110A	ENST00000262189	NM_170606.2	3110	gTg/gCg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36209218	36209218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	397	512	0	ENST00000222270.7:c.298G>A	p.Gly100Ser	p.G100S	ENST00000222270	NM_014727.1	100	Ggc/Agc																																																																															
CD276	80381	MSKCC	GRCh37	15	73996680	73996680	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			15	28	40	0	ENST00000318443.5:c.1236G>C	p.Gln412His	p.Q412H	ENST00000318443	NM_001024736.1	412	caG/caC																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012946	176012946	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	193	226	0	ENST00000367669.3:c.1430G>C	p.Ser477Thr	p.S477T	ENST00000367669	NM_022457.5	477	aGt/aCt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487623	56487623	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	369	380	0	ENST00000267101.3:c.1556C>G	p.Ser519Cys	p.S519C	ENST00000267101	NM_001982.3	519	tCc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576853	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0075919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	324	476	0	ENST00000269305.4:c.993_993+1delinsTT		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178928019	178928019	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			935	294	264	0	ENST00000263967.3:c.1297A>T	p.Thr433Ser	p.T433S	ENST00000263967	NM_006218.2	433	Aca/Tca																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371721	55371743	+	stop_gained	Nonsense_Mutation	DEL	CCGGCCGCGGCGGCGCAAGCAGG	CCGGCCGCGGCGGCGCAAGCAGG	GC			P-0075919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	320	483	1	ENST00000297316.4:c.411_433delinsGC	p.Tyr137_Val145delinsTer	p.Y137_V145delins*	ENST00000297316	NM_022454.3	137	taCCGGCCGCGGCGGCGCAAGCAGGtg/taGCtg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974676	21974676	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0075919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	321	423	0	ENST00000304494.5:c.150+1G>T		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																																
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			785	38	483	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
CDH1	999	MSKCC	GRCh37	16	68853206	68853209	+	frameshift_variant	Frame_Shift_Del	DEL	CCAA	CCAA	-			P-0075921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	51	374	0	ENST00000261769.5:c.1590_1593del	p.Asn531GlyfsTer25	p.N531Gfs*25	ENST00000261769	NM_004360.3	530	gCCAAc/gc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829617	72829617	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	65	381	0	ENST00000268489.5:c.6964C>T	p.Arg2322Ter	p.R2322*	ENST00000268489	NM_006885.3	2322	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912092	114912092	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0075923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	68	316	0	ENST00000543371.1:c.1162T>C	p.Trp388Arg	p.W388R	ENST00000543371	NM_001198531.1	388	Tgg/Cgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097628	27097628	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	87	457	0	ENST00000324856.7:c.3217T>C	p.Trp1073Arg	p.W1073R	ENST00000324856	NM_006015.4	1073	Tgg/Cgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916932	178916937	+	inframe_deletion	In_Frame_Del	DEL	AACCGT	AACCGT	-			P-0075923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	91	222	0	ENST00000263967.3:c.319_324del	p.Asn107_Arg108del	p.N107_R108del	ENST00000263967	NM_006218.2	107	AACCGT/-																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0075924-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	29	103	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099026	27099026	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075924-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	88	392	0	ENST00000324856.7:c.3442C>T	p.Gln1148Ter	p.Q1148*	ENST00000324856	NM_006015.4	1148	Cag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161938	47161939	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0075924-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	40	256	0	ENST00000409792.3:c.4187dup	p.Asn1396LysfsTer2	p.N1396Kfs*2	ENST00000409792	NM_014159.6	1396	aat/aaAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970971	21970971	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0075924-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	138	442	0	ENST00000304494.5:c.387C>G	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taC/taG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0075924-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	50	222	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132498	11132498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075924-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	82	431	0	ENST00000344626.4:c.2714G>A	p.Arg905His	p.R905H	ENST00000344626	NM_003072.3	905	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108172425	108172425	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075924-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	58	198	0	ENST00000278616.4:c.5228C>G	p.Thr1743Arg	p.T1743R	ENST00000278616	NM_000051.3	1743	aCa/aGa																																																																															
RHOA	387	MSKCC	GRCh37	3	49405940	49405942	+	inframe_deletion	In_Frame_Del	DEL	ATA	ATA	-			P-0075924-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	38	342	0	ENST00000418115.1:c.196_198del	p.Tyr66del	p.Y66del	ENST00000418115	NM_001664.2	66	TAT/-																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981145	201981145	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075924-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	191	401	0	ENST00000359651.3:c.225del	p.Trp75Ter	p.W75*	ENST00000359651		75	tGg/tg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0075491-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			58	21	165	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31451663	31451663	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075491-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			53	27	235	0	ENST00000344624.3:c.2659T>A	p.Phe887Ile	p.F887I	ENST00000344624		887	Ttc/Atc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0075687-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			251	10	331	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0075687-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	16	457	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971146	21971146	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075687-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	17	477	0	ENST00000304494.5:c.212A>T	p.Asn71Ile	p.N71I	ENST00000304494	NM_000077.4	71	aAc/aTc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986681	36986682	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075687-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			168	15	374	0	ENST00000354822.5:c.1007dup	p.Ser338GlnfsTer101	p.S338Qfs*101	ENST00000354822	NM_001079668.2	336	gtg/gtTg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0075870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	47	364	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	198	434	0	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct																																																																															
AR	367	MSKCC	GRCh37	X	66941763	66941763	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	48	348	0	ENST00000374690.3:c.2407C>A	p.Gln803Lys	p.Q803K	ENST00000374690	NM_000044.3	803	Cag/Aag																																																																															
MET	4233	MSKCC	GRCh37	7	116380049	116380049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			808	48	377	0	ENST00000397752.3:c.1438C>T	p.Leu480Phe	p.L480F	ENST00000397752	NM_000245.2	480	Ctc/Ttc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68981367	68981367	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	25	266	0	ENST00000288368.4:c.1439C>A	p.Ser480Ter	p.S480*	ENST00000288368	NM_024870.2	480	tCa/tAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445560	49445560	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			787	105	613	0	ENST00000301067.7:c.1906T>G	p.Ser636Ala	p.S636A	ENST00000301067	NM_003482.3	636	Tcc/Gcc																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6230710	6230710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	64	381	0	ENST00000252674.7:c.291G>T	p.Lys97Asn	p.K97N	ENST00000252674	NM_005934.3	97	aaG/aaT																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570253	87570271	+	frameshift_variant	Frame_Shift_Del	DEL	ACGCAGTCGCAGATGCTGC	ACGCAGTCGCAGATGCTGC	-			P-0075870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	67	431	0	ENST00000277120.3:c.1994_2012del	p.Thr665IlefsTer2	p.T665Ifs*2	ENST00000277120		665	ACGCAGTCGCAGATGCTGCat/at																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965593	25965593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	57	416	0	ENST00000435504.4:c.3613G>A	p.Ala1205Thr	p.A1205T	ENST00000435504		1205	Gct/Act																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423655	88423655	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	63	424	0	ENST00000360948.2:c.2180G>T	p.Gly727Val	p.G727V	ENST00000360948	NM_001012338.2	727	gGa/gTa																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2489215	2489223	+	inframe_deletion	In_Frame_Del	DEL	GTCCTGCAA	GTCCTGCAA	-			P-0075870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	50	334	0	ENST00000355716.4:c.121_129del	p.Ser41_Lys43del	p.S41_K43del	ENST00000355716	NM_003820.2	40	ccGTCCTGCAAg/ccg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0075873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			73	212	391	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	103	487	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs775126020		P-0075873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			44	65	314	0	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630504	47630504	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs372189599		P-0075873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	170	483	0	ENST00000233146.2:c.174C>G	p.Phe58Leu	p.F58L	ENST00000233146	NM_000251.2	58	ttC/ttG																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913558	32913559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1265028174		P-0075873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	71	383	2	ENST00000380152.3:c.5073dup	p.Trp1692MetfsTer3	p.W1692Mfs*3	ENST00000380152		1689	gca/gcAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1422891742		P-0075873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	233	371	0	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0075873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	134	282	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134782	41134782	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	58	459	1	ENST00000379561.5:c.846G>T	p.Glu282Asp	p.E282D	ENST00000379561	NM_002015.3	282	gaG/gaT																																																																															
AGO2	27161	MSKCC	GRCh37	8	141542615	141542615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	52	435	0	ENST00000220592.5:c.2371G>A	p.Val791Met	p.V791M	ENST00000220592	NM_012154.3	791	Gtg/Atg																																																																															
RET	5979	MSKCC	GRCh37	10	43610170	43610170	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	85	529	0	ENST00000355710.3:c.2122G>C	p.Ala708Pro	p.A708P	ENST00000355710	NM_020975.4	708	Gcc/Ccc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341499	89341500	+	splice_donor_variant	Splice_Site	INS	-	-	CCCG			P-0075873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	88	460	0	ENST00000301030.4:c.7567_7569+1dup		p.X2523_splice	ENST00000301030	NM_001256183.1	2523																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	197	434	0	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295801	212295801	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1423325504		P-0075877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	58	334	0	ENST00000342788.4:c.2512C>T	p.Arg838Ter	p.R838*	ENST00000342788	NM_005235.2	838	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5211707	5211707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145108936		P-0075877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	136	374	0	ENST00000357368.4:c.5128C>T	p.Arg1710Cys	p.R1710C	ENST00000357368	NM_002850.3	1710	Cgc/Tgc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78599504	78599504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	134	359	0	ENST00000306801.3:c.176G>A	p.Ser59Asn	p.S59N	ENST00000306801	NM_020761.2	59	aGt/aAt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712508	43712508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1052588816		P-0075877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	127	360	0	ENST00000382044.4:c.4676G>A	p.Ser1559Asn	p.S1559N	ENST00000382044	NM_001141980.1	1559	aGt/aAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0075877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	90	226	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433232	49433233	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0075877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	134	427	0	ENST00000301067.7:c.8214dup	p.Phe2739LeufsTer30	p.F2739Lfs*30	ENST00000301067	NM_003482.3	2738	-/C																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984394	201984394	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	413	361	0	ENST00000359651.3:c.1059G>T	p.Lys353Asn	p.K353N	ENST00000359651		353	aaG/aaT																																																																															
KLF5	688	MSKCC	GRCh37	13	73636297	73636298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0075877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	210	425	0	ENST00000377687.4:c.561dup	p.Glu188Ter	p.E188*	ENST00000377687	NM_001730.3	187	cct/ccTt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178072	56178072	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	137	343	0	ENST00000399503.3:c.3046del	p.Ser1016LeufsTer66	p.S1016Lfs*66	ENST00000399503	NM_005921.1	1015	ccT/cc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011220	12011220	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	103	227	0	ENST00000353533.5:c.629del	p.Leu210Ter	p.L210*	ENST00000353533	NM_003010.3	209	acT/ac																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0075880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	13	411	0				ENST00000310581	NM_198253.2																																																																																	
RBM10	8241	MSKCC	GRCh37	X	47039395	47039395	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	28	512	0	ENST00000329236.7:c.787C>T	p.Gln263Ter	p.Q263*	ENST00000329236	NM_001204466.1	263	Caa/Taa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131940597	131940597	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	44	319	0	ENST00000265335.6:c.2624T>C	p.Leu875Pro	p.L875P	ENST00000265335		875	cTt/cCt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922757	44922757	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	38	422	0	ENST00000377967.4:c.1618G>T	p.Gly540Cys	p.G540C	ENST00000377967	NM_021140.2	540	Ggc/Tgc																																																																															
KDR	3791	MSKCC	GRCh37	4	55973910	55973910	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	33	456	0	ENST00000263923.4:c.1406A>T	p.Glu469Val	p.E469V	ENST00000263923	NM_002253.2	469	gAg/gTg																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480104	50480104	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	28	363	0	ENST00000394963.4:c.338A>C	p.Gln113Pro	p.Q113P	ENST00000394963	NM_003076.4	113	cAg/cCg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162394398	162394398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	49	404	1	ENST00000366898.1:c.670G>T	p.Val224Leu	p.V224L	ENST00000366898	NM_004562.2	224	Gta/Tta																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103803	47103803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	71	438	0	ENST00000409792.3:c.6143G>T	p.Arg2048Ile	p.R2048I	ENST00000409792	NM_014159.6	2048	aGa/aTa																																																																															
BLM	641	MSKCC	GRCh37	15	91292724	91292724	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	60	420	0	ENST00000355112.3:c.226C>G	p.Pro76Ala	p.P76A	ENST00000355112	NM_000057.2	76	Cct/Gct																																																																															
FLT1	2321	MSKCC	GRCh37	13	28908206	28908206	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	32	393	0	ENST00000282397.4:c.2549del	p.Lys850ArgfsTer11	p.K850Rfs*11	ENST00000282397	NM_002019.4	850	aAg/ag																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099271	4099271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	29	493	0	ENST00000262948.5:c.847G>T	p.Val283Leu	p.V283L	ENST00000262948	NM_030662.3	283	Gtg/Ttg																																																																															
NF1	4763	MSKCC	GRCh37	17	29670154	29670154	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0075880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	44	278	0	ENST00000358273.4:c.7189+1G>T		p.X2397_splice	ENST00000358273	NM_001042492.2	2397																																																																																
INHA	3623	MSKCC	GRCh37	2	220439675	220439675	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	34	569	0	ENST00000243786.2:c.528G>T	p.Trp176Cys	p.W176C	ENST00000243786	NM_002191.3	176	tgG/tgT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188005	32188005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	38	581	0	ENST00000375023.3:c.1216C>A	p.Gln406Lys	p.Q406K	ENST00000375023	NM_004557.3	406	Caa/Aaa																																																																															
NF1	4763	MSKCC	GRCh37	17	29562953	29562953	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0075880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	40	352	0	ENST00000358273.4:c.3888T>A	p.Tyr1296Ter	p.Y1296*	ENST00000358273	NM_001042492.2	1296	taT/taA																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575561	64575561	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	36	511	0	ENST00000337652.1:c.471G>T	p.Leu157Phe	p.L157F	ENST00000337652	NM_130803.2	157	ttG/ttT																																																																															
BAP1	8314	MSKCC	GRCh37	3	52443581	52443622	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GCTCTGAAGGTCGTAGATCTCCTCCACTTGCACCCCCTTGAC	GCTCTGAAGGTCGTAGATCTCCTCCACTTGCACCCCCTTGAC	-			P-0075880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	42	545	0	ENST00000460680.1:c.70_111del	p.Val24_Ser37del	p.V24_S37del	ENST00000460680	NM_004656.3	24	GTCAAGGGGGTGCAAGTGGAGGAGATCTACGACCTTCAGAGC/-																																																																															
ATM	472	MSKCC	GRCh37	11	108158368	108158368	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	46	322	0	ENST00000278616.4:c.4036del	p.Glu1346SerfsTer3	p.E1346Sfs*3	ENST00000278616	NM_000051.3	1345	gtG/gt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114724360	114724360	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	48	371	0	ENST00000543371.1:c.427A>G	p.Ile143Val	p.I143V	ENST00000543371	NM_001198531.1	143	Att/Gtt																																																																															
RET	5979	MSKCC	GRCh37	10	43600502	43600502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	23	588	0	ENST00000355710.3:c.728G>T	p.Cys243Phe	p.C243F	ENST00000355710	NM_020975.4	243	tGc/tTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29585375	29585375	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	49	358	0	ENST00000358273.4:c.4187G>C	p.Arg1396Pro	p.R1396P	ENST00000358273	NM_001042492.2	1396	cGt/cCt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678428	88678428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	35	493	0	ENST00000360948.2:c.1108C>A	p.His370Asn	p.H370N	ENST00000360948	NM_001012338.2	370	Cac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0075892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	58	478	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0075892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	38	446	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38785131	38785131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	71	437	0	ENST00000348513.6:c.1142G>A	p.Gly381Glu	p.G381E	ENST00000348513	NM_003079.4	381	gGa/gAa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37665956	37665956	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0075892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	26	303	2	ENST00000447079.4:c.2610-2A>G		p.X870_splice	ENST00000447079	NM_015083.1	870																																																																																
PALB2	79728	MSKCC	GRCh37	16	23646932	23646933	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TTTTACTTATAGCTTTATTTACAAT			P-0075892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	28	419	0	ENST00000261584.4:c.934_935insATTGTAAATAAAGCTATAAGTAAAA	p.Ser312AsnfsTer4	p.S312Nfs*4	ENST00000261584	NM_024675.3	312	agt/aATTGTAAATAAAGCTATAAGTAAAAgt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243857	46243857	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075894-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	177	269	0	ENST00000334344.6:c.1951C>T	p.Gln651Ter	p.Q651*	ENST00000334344	NM_152641.2	651	Cag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29422330	29422330	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0075894-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	119	194	1	ENST00000358273.4:c.3G>T	p.Met1?	p.M1?	ENST00000358273	NM_001042492.2	1	atG/atT																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894899	101894899	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs539413187		P-0075895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	49	413	0	ENST00000374994.4:c.452G>A	p.Arg151His	p.R151H	ENST00000374994	NM_004612.2	151	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0075895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	73	650	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983228	149983228	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0075895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	43	453	0	ENST00000253339.5:c.3030del	p.Phe1010LeufsTer10	p.F1010Lfs*10	ENST00000253339		1010	ttT/tt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591889	48591889	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1060500741		P-0075895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	54	455	0	ENST00000342988.3:c.1052A>T	p.Asp351Val	p.D351V	ENST00000342988	NM_005359.5	351	gAt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577025	7577025	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0075895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	95	558	0	ENST00000269305.4:c.913A>T	p.Lys305Ter	p.K305*	ENST00000269305	NM_001126112.2	305	Aag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445220	49445220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	82	608	0	ENST00000301067.7:c.2246A>G	p.Glu749Gly	p.E749G	ENST00000301067	NM_003482.3	749	gAg/gGg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610139	10610139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	60	467	0	ENST00000171111.5:c.571G>A	p.Ala191Thr	p.A191T	ENST00000171111	NM_203500.1	191	Gct/Act																																																																															
MGA	23269	MSKCC	GRCh37	15	42034970	42034971	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0075895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	42	485	0	ENST00000219905.7:c.4817dup	p.Leu1606PhefsTer15	p.L1606Ffs*15	ENST00000219905	NM_001164273.1	1604	-/T																																																																															
POT1	25913	MSKCC	GRCh37	7	124537227	124537227	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0075895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	26	197	1	ENST00000357628.3:c.1A>G	p.Met1?	p.M1?	ENST00000357628	NM_015450.2	1	Atg/Gtg																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197453	26197453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	75	535	0	ENST00000356476.2:c.26G>A	p.Arg9His	p.R9H	ENST00000356476		9	cGc/cAc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027971	48027971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	53	459	0	ENST00000234420.5:c.2849G>A	p.Ser950Asn	p.S950N	ENST00000234420	NM_000179.2	950	aGc/aAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948180	71948180	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	72	492	0	ENST00000298229.2:c.2892G>T	p.Glu964Asp	p.E964D	ENST00000298229	NM_001567.3	964	gaG/gaT																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067126	37067126	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs267607815		P-0075895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	29	223	0	ENST00000231790.2:c.1039-2A>G		p.X347_splice	ENST00000231790	NM_000249.3	347																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242487	55242487	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913231		P-0075895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			723	47	351	0	ENST00000275493.2:c.2257C>T	p.Pro753Ser	p.P753S	ENST00000275493	NM_005228.3	753	Ccg/Tcg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026890	48026890	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	62	441	0	ENST00000234420.5:c.1772del	p.Pro591GlnfsTer19	p.P591Qfs*19	ENST00000234420	NM_000179.2	590	Ccc/cc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111051	193111053	+	inframe_deletion	In_Frame_Del	DEL	CTA	CTA	-			P-0075895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	39	330	0	ENST00000367435.3:c.587_589del	p.Thr196del	p.T196del	ENST00000367435	NM_024529.4	195	tCTAct/tct																																																																															
PARP1	142	MSKCC	GRCh37	1	226564860	226564861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0075895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	46	393	0	ENST00000366794.5:c.1889dup	p.Asn630LysfsTer15	p.N630Kfs*15	ENST00000366794	NM_001618.3	630	aat/aaAt																																																																															
KIT	3815	MSKCC	GRCh37	4	55595603	55595603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	49	318	0	ENST00000288135.5:c.2093C>T	p.Ala698Val	p.A698V	ENST00000288135	NM_000222.2	698	gCa/gTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0075896-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	16	182	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0075896-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	19	286	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030631	48030631	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs191109849		P-0075896-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	34	419	0	ENST00000234420.5:c.3245C>T	p.Pro1082Leu	p.P1082L	ENST00000234420	NM_000179.2	1082	cCg/cTg																																																																															
SDHA	6389	MSKCC	GRCh37	5	251560	251560	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1042170		P-0075896-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	42	342	0	ENST00000264932.6:c.1771G>A	p.Ala591Thr	p.A591T	ENST00000264932	NM_004168.2	591	Gcg/Acg																																																																															
ATM	472	MSKCC	GRCh37	11	108188220	108188220	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075896-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	25	264	0	ENST00000278616.4:c.6319A>G	p.Met2107Val	p.M2107V	ENST00000278616	NM_000051.3	2107	Atg/Gtg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969791	81969791	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075896-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	25	352	0	ENST00000359376.3:c.2860G>T	p.Glu954Ter	p.E954*	ENST00000359376	NM_002661.3	954	Gaa/Taa																																																																															
KDR	3791	MSKCC	GRCh37	4	55981115	55981115	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075896-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	10	356	0	ENST00000263923.4:c.584C>G	p.Ala195Gly	p.A195G	ENST00000263923	NM_002253.2	195	gCt/gGt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940147	71940147	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075896-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	29	434	0	ENST00000298229.2:c.532C>G	p.Leu178Val	p.L178V	ENST00000298229	NM_001567.3	178	Ctg/Gtg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152420040	152420040	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201118302		P-0074068-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			391	62	285	0	ENST00000206249.3:c.1727C>T	p.Ser576Leu	p.S576L	ENST00000206249	NM_000125.3	576	tCg/tTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	protein_altering_variant	In_Frame_Ins	INS	-	-	GTT	rs727504263		P-0074068-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			280	194	362	0	ENST00000275493.2:c.2308_2309insGTT	p.Asp770delinsGlyTyr	p.D770delinsGY	ENST00000275493	NM_005228.3	770	gac/gGTTac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2951897	2951897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074068-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			320	100	354	0	ENST00000396946.4:c.3053A>G	p.Gln1018Arg	p.Q1018R	ENST00000396946	NM_032415.4	1018	cAg/cGg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132426	11132426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074068-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			328	86	355	0	ENST00000344626.4:c.2642A>G	p.Asp881Gly	p.D881G	ENST00000344626	NM_003072.3	881	gAc/gGc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138581	11138594	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGATTACTTTGC	GAAGATTACTTTGC	-			P-0074068-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	82	313	0	ENST00000344626.4:c.3338_3351del	p.Glu1113ValfsTer5	p.E1113Vfs*5	ENST00000344626	NM_003072.3	1113	GAAGATTACTTTGCg/g																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134240	11134240	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074068-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			322	36	289	0	ENST00000344626.4:c.2906A>T	p.His969Leu	p.H969L	ENST00000344626	NM_003072.3	969	cAc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0075079-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			350	203	241	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067308	37067308	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075079-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			631	64	340	0	ENST00000231790.2:c.1219C>G	p.Gln407Glu	p.Q407E	ENST00000231790	NM_000249.3	407	Cag/Gag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0075079-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			317	74	339	0				ENST00000310581	NM_198253.2																																																																																	
PIK3C2G	5288	MSKCC	GRCh37	12	18641541	18641541	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075079-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			620	62	293	0	ENST00000266497.5:c.2540C>G	p.Ser847Cys	p.S847C	ENST00000266497		847	tCt/tGt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440647	56440647	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075079-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			598	53	405	0	ENST00000407977.2:c.571C>A	p.Pro191Thr	p.P191T	ENST00000407977		191	Ccc/Acc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144018	11144018	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075079-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			502	140	376	0	ENST00000344626.4:c.3599G>T	p.Arg1200Leu	p.R1200L	ENST00000344626	NM_003072.3	1200	cGt/cTt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663187	227663187	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075079-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			626	55	404	0	ENST00000305123.5:c.268G>C	p.Asp90His	p.D90H	ENST00000305123	NM_005544.2	90	Gac/Cac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498406	89498406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075079-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			596	101	356	0	ENST00000336596.2:c.2378C>A	p.Pro793Gln	p.P793Q	ENST00000336596	NM_005233.5	793	cCa/cAa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223738	53223738	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075079-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			647	113	465	0	ENST00000375401.3:c.3621C>G	p.Asp1207Glu	p.D1207E	ENST00000375401	NM_004187.3	1207	gaC/gaG																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412178	63412178	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075079-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			696	56	453	0	ENST00000330258.3:c.989A>C	p.Asp330Ala	p.D330A	ENST00000330258	NM_152424.3	330	gAc/gCc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306627	41306627	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs202093079		P-0075357-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	56	216	0	ENST00000373198.4:c.1032C>A	p.Asn344Lys	p.N344K	ENST00000373198	NM_133170.3	344	aaC/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934874		P-0075357-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	68	319	0	ENST00000269305.4:c.451C>G	p.Pro151Ala	p.P151A	ENST00000269305	NM_001126112.2	151	Ccc/Gcc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057874	27057874	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075357-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	97	333	0	ENST00000324856.7:c.1582C>T	p.Gln528Ter	p.Q528*	ENST00000324856	NM_006015.4	528	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101274	27101275	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0075357-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	75	348	0	ENST00000324856.7:c.4559dup	p.Ala1522ArgfsTer10	p.A1522Rfs*10	ENST00000324856	NM_006015.4	1519	cag/caGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075357-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	69	174	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593483	48593484	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0075357-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	82	214	0	ENST00000342988.3:c.1235dup	p.Tyr412Ter	p.Y412*	ENST00000342988	NM_005359.5	412	tac/tAac																																																																															
FLT1	2321	MSKCC	GRCh37	13	28891647	28891647	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075464-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	115	296	0	ENST00000282397.4:c.3374C>A	p.Ser1125Tyr	p.S1125Y	ENST00000282397	NM_002019.4	1125	tCt/tAt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560922	9560922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075464-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			640	76	320	0	ENST00000353224.5:c.860G>T	p.Arg287Met	p.R287M	ENST00000353224	NM_177990.2	287	aGg/aTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207076	1207076	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075464-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			338	147	312	0	ENST00000326873.7:c.164del	p.Leu55ArgfsTer9	p.L55Rfs*9	ENST00000326873	NM_000455.4	55	cTg/cg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157454302	157454302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075464-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	68	255	0	ENST00000346085.5:c.2512G>A	p.Gly838Arg	p.G838R	ENST00000346085	NM_020732.3	838	Ggg/Agg																																																																															
HGF	3082	MSKCC	GRCh37	7	81392122	81392122	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075464-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			221	107	236	0	ENST00000222390.5:c.155A>G	p.Lys52Arg	p.K52R	ENST00000222390	NM_000601.4	52	aAa/aGa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129439	64129439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075464-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			520	148	349	0	ENST00000334205.4:c.871G>T	p.Gly291Trp	p.G291W	ENST00000334205	NM_003942.2	291	Ggg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435098	49435098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075464-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			390	66	310	0	ENST00000301067.7:c.6455G>T	p.Gly2152Val	p.G2152V	ENST00000301067	NM_003482.3	2152	gGc/gTc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968204	134968204	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075464-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			485	49	325	0	ENST00000398015.3:c.2717C>G	p.Ser906Cys	p.S906C	ENST00000398015	NM_004441.4	906	tCc/tGc																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117695945	117695945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075464-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	91	247	0	ENST00000369458.3:c.492G>T	p.Glu164Asp	p.E164D	ENST00000369458	NM_024626.3	164	gaG/gaT																																																																															
FLT1	2321	MSKCC	GRCh37	13	28919637	28919637	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075464-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			379	107	269	0	ENST00000282397.4:c.2300T>A	p.Val767Glu	p.V767E	ENST00000282397	NM_002019.4	767	gTg/gAg																																																																															
NBN	4683	MSKCC	GRCh37	8	90976649	90976649	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075464-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			273	74	219	0	ENST00000265433.3:c.983A>T	p.His328Leu	p.H328L	ENST00000265433	NM_002485.4	328	cAt/cTt																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719796	190719796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075464-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			216	41	245	0	ENST00000441310.2:c.1798G>A	p.Asp600Asn	p.D600N	ENST00000441310	NM_000534.4	600	Gat/Aat																																																																															
MTOR	2475	MSKCC	GRCh37	1	11194472	11194472	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075464-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			455	60	297	0	ENST00000361445.4:c.5182G>T	p.Ala1728Ser	p.A1728S	ENST00000361445	NM_004958.3	1728	Gcc/Tcc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2058429	2058429	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075464-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			352	50	271	0	ENST00000349721.2:c.1486G>T	p.Glu496Ter	p.E496*	ENST00000349721	NM_003070.3	496	Gag/Tag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587777894		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	126	277	0	ENST00000361445.4:c.6644C>A	p.Ser2215Tyr	p.S2215Y	ENST00000361445	NM_004958.3	2215	tCt/tAt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115280616	115280616	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	104	286	0	ENST00000438362.2:c.415G>T	p.Glu139Ter	p.E139*	ENST00000438362	NM_001242891.1	139	Gaa/Taa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261767	16261767	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759881159		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	165	338	0	ENST00000375759.3:c.9032G>A	p.Arg3011Gln	p.R3011Q	ENST00000375759	NM_015001.2	3011	cGa/cAa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746018	162746018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	171	350	0	ENST00000367921.3:c.2141G>A	p.Arg714Gln	p.R714Q	ENST00000367921	NM_006182.2	714	cGa/cAa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193099338	193099338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	133	225	0	ENST00000367435.3:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000367435	NM_024529.4	91	cGa/cAa																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206651576	206651576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	186	385	0	ENST00000367120.3:c.886G>A	p.Asp296Asn	p.D296N	ENST00000367120	NM_014002.3	296	Gac/Aac																																																																															
STK40	83931	MSKCC	GRCh37	1	36808981	36808981	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs534849916		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	159	333	0	ENST00000373129.3:c.1073C>T	p.Ala358Val	p.A358V	ENST00000373129	NM_032017.1	358	gCg/gTg																																																																															
MPL	4352	MSKCC	GRCh37	1	43814560	43814560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	138	334	0	ENST00000372470.3:c.1355G>A	p.Arg452His	p.R452H	ENST00000372470	NM_005373.2	452	cGc/cAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710666	114710666	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	132	281	0	ENST00000543371.1:c.151G>T	p.Glu51Ter	p.E51*	ENST00000543371	NM_001198531.1	51	Gaa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264066389		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	149	272	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	12	250	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
CTR9	9646	MSKCC	GRCh37	11	10789530	10789530	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1314433915		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	141	339	0	ENST00000361367.2:c.1864C>T	p.Arg622Ter	p.R622*	ENST00000361367	NM_014633.3	622	Cga/Tga																																																																															
CBL	867	MSKCC	GRCh37	11	119144697	119144697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	39	316	0	ENST00000264033.4:c.710C>T	p.Ser237Leu	p.S237L	ENST00000264033	NM_005188.3	237	tCg/tTg																																																																															
CBL	867	MSKCC	GRCh37	11	119149251	119149251	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267606708		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	31	287	0	ENST00000264033.4:c.1259G>A	p.Arg420Gln	p.R420Q	ENST00000264033	NM_005188.3	420	cGa/cAa																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316059	14316059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	70	133	0	ENST00000256196.4:c.366G>T	p.Met122Ile	p.M122I	ENST00000256196		122	atG/atT																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431482	121431482	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057520779		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	66	379	0	ENST00000257555.6:c.686G>A	p.Arg229Gln	p.R229Q	ENST00000257555		229	cGa/cAa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871250	12871250	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	108	261	0	ENST00000228872.4:c.475+2T>C		p.X159_splice	ENST00000228872	NM_004064.3	159																																																																																
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519943		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	120	291	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435088	18435088	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs777959749		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	129	310	0	ENST00000266497.5:c.73C>A	p.Leu25Ile	p.L25I	ENST00000266497		25	Ctc/Atc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	99	265	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
CCND2	894	MSKCC	GRCh37	12	4409125	4409125	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	172	320	0	ENST00000261254.3:c.820G>T	p.Glu274Ter	p.E274*	ENST00000261254	NM_001759.3	274	Gaa/Taa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	475226	475226	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs755599417		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	111	320	0	ENST00000399788.2:c.411G>T	p.Lys137Asn	p.K137N	ENST00000399788	NM_001042603.1	137	aaG/aaT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426543	49426543	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760983900		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	223	429	0	ENST00000301067.7:c.11945G>A	p.Arg3982Gln	p.R3982Q	ENST00000301067	NM_003482.3	3982	cGa/cAa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489503	56489503	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	179	299	0	ENST00000267101.3:c.1968C>A	p.Phe656Leu	p.F656L	ENST00000267101	NM_001982.3	656	ttC/ttA																																																																															
FLT1	2321	MSKCC	GRCh37	13	28913359	28913359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	135	283	0	ENST00000282397.4:c.2434C>T	p.Arg812Trp	p.R812W	ENST00000282397	NM_002019.4	812	Cgg/Tgg																																																																															
MGA	23269	MSKCC	GRCh37	15	42041116	42041116	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780889520		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	62	321	0	ENST00000219905.7:c.5494C>T	p.Arg1832Trp	p.R1832W	ENST00000219905	NM_001164273.1	1832	Cgg/Tgg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81819709	81819709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	208	329	0	ENST00000359376.3:c.115G>A	p.Glu39Lys	p.E39K	ENST00000359376	NM_002661.3	39	Gag/Aag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81892762	81892762	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	39	219	0	ENST00000359376.3:c.473G>T	p.Arg158Ile	p.R158I	ENST00000359376	NM_002661.3	158	aGa/aTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29652920	29652920	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	157	311	0	ENST00000358273.4:c.4918G>T	p.Glu1640Ter	p.E1640*	ENST00000358273	NM_001042492.2	1640	Gaa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786202457		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	29	257	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696653	47696653	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866898949		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	169	311	0	ENST00000347630.2:c.295C>T	p.Arg99Trp	p.R99W	ENST00000347630	NM_001007230.1	99	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	30	301	0	ENST00000269305.4:c.800G>T	p.Arg267Leu	p.R267L	ENST00000269305	NM_001126112.2	267	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778720		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	175	319	0	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	117	349	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604736	48604736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	168	322	1	ENST00000342988.3:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000342988	NM_005359.5	520	Gaa/Taa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56377265	56377265	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	18	207	0	ENST00000348428.3:c.886C>T	p.Arg296Ter	p.R296*	ENST00000348428	NM_006785.3	296	Cga/Tga																																																																															
CALR	811	MSKCC	GRCh37	19	13051370	13051370	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1019627616		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	166	380	0	ENST00000316448.5:c.718G>A	p.Glu240Lys	p.E240K	ENST00000316448	NM_004343.3	240	Gag/Aag																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367830	15367830	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867596343		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	165	317	0	ENST00000263377.2:c.1496C>T	p.Ser499Leu	p.S499L	ENST00000263377	NM_058243.2	499	tCg/tTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15379802	15379802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	153	277	0	ENST00000263377.2:c.337C>T	p.Arg113Cys	p.R113C	ENST00000263377	NM_058243.2	113	Cgc/Tgc																																																																															
AXL	558	MSKCC	GRCh37	19	41759546	41759546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	149	327	0	ENST00000301178.4:c.1969G>A	p.Ala657Thr	p.A657T	ENST00000301178	NM_021913.4	657	Gcc/Acc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52722992	52722992	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1362406458		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	120	332	0	ENST00000322088.6:c.1177G>A	p.Glu393Lys	p.E393K	ENST00000322088	NM_014225.5	393	Gag/Aag																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128029016	128029016	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139049289		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	119	239	0	ENST00000285398.2:c.1841C>T	p.Ser614Leu	p.S614L	ENST00000285398	NM_000122.1	614	tCg/tTg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795030	242795030	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779874434		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	42	401	0	ENST00000334409.5:c.179C>T	p.Ser60Leu	p.S60L	ENST00000334409	NM_005018.2	60	tCg/tTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965468	25965468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	144	305	0	ENST00000435504.4:c.3738G>T	p.Glu1246Asp	p.E1246D	ENST00000435504		1246	gaG/gaT																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46587864	46587864	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1402203251		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	169	378	0	ENST00000263734.3:c.542G>A	p.Arg181His	p.R181H	ENST00000263734	NM_001430.4	181	cGt/cAt																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67632300	67632300	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	35	256	0	ENST00000272342.5:c.2486C>A	p.Ser829Tyr	p.S829Y	ENST00000272342	NM_019002.3	829	tCt/tAt																																																																															
TOP1	7150	MSKCC	GRCh37	20	39704921	39704921	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778237366		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	146	337	0	ENST00000361337.2:c.266G>A	p.Arg89Gln	p.R89Q	ENST00000361337	NM_003286.2	89	cGa/cAa																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21336680	21336681	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760808069		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	140	377	1	ENST00000215739.8:c.27dup	p.Gln10AlafsTer24	p.Q10Afs*24	ENST00000215739	NM_006767.3	7	acg/acGg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121280	29121280	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs750393263		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	146	326	0	ENST00000328354.6:c.395G>T	p.Arg132Ile	p.R132I	ENST00000328354	NM_007194.3	132	aGa/aTa																																																																															
EP300	2033	MSKCC	GRCh37	22	41568561	41568561	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	128	310	0	ENST00000263253.7:c.4511T>C	p.Phe1504Ser	p.F1504S	ENST00000263253	NM_001429.3	1504	tTc/tCc																																																																															
BCL6	604	MSKCC	GRCh37	3	187444663	187444663	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	143	354	0	ENST00000232014.4:c.1564G>T	p.Glu522Ter	p.E522*	ENST00000232014	NM_001130845.1	522	Gag/Tag																																																																															
TP63	8626	MSKCC	GRCh37	3	189586483	189586483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	183	373	0	ENST00000264731.3:c.1107G>T	p.Lys369Asn	p.K369N	ENST00000264731	NM_003722.4	369	aaG/aaT																																																																															
TP63	8626	MSKCC	GRCh37	3	189612028	189612028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	41	301	0	ENST00000264731.3:c.1780C>T	p.Arg594Ter	p.R594*	ENST00000264731	NM_003722.4	594	Cga/Tga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	23	267	0	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468516	89468516	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1453560937		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	111	278	2	ENST00000336596.2:c.2050C>T	p.Arg684Ter	p.R684*	ENST00000336596	NM_005233.5	684	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187516852	187516852	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776855582		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	136	250	0	ENST00000441802.2:c.13129G>A	p.Asp4377Asn	p.D4377N	ENST00000441802	NM_005245.3	4377	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112157650	112157650	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	109	259	0	ENST00000257430.4:c.1370C>A	p.Ser457Ter	p.S457*	ENST00000257430	NM_000038.5	457	tCa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	150	326	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112177203	112177203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	134	318	0	ENST00000257430.4:c.5912C>A	p.Ser1971Tyr	p.S1971Y	ENST00000257430	NM_000038.5	1971	tCt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112177354	112177354	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	21	331	0	ENST00000257430.4:c.6063C>A	p.Phe2021Leu	p.F2021L	ENST00000257430	NM_000038.5	2021	ttC/ttA																																																																															
APC	324	MSKCC	GRCh37	5	112177901	112177901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs752654519		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	134	329	0	ENST00000257430.4:c.6610C>T	p.Arg2204Ter	p.R2204*	ENST00000257430	NM_000038.5	2204	Cga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056274	180056274	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770915197		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	47	327	0	ENST00000261937.6:c.970G>A	p.Glu324Lys	p.E324K	ENST00000261937	NM_182925.4	324	Gag/Aag																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67569823	67569823	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1230037871		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	167	269	0	ENST00000274335.5:c.484C>T	p.Arg162Ter	p.R162*	ENST00000274335		162	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	22	252	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67593331	67593331	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	57	325	0	ENST00000274335.5:c.2077G>T	p.Glu693Ter	p.E693*	ENST00000274335		693	Gaa/Taa																																																																															
MSH3	4437	MSKCC	GRCh37	5	80021291	80021291	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs539295465		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	119	266	0	ENST00000265081.6:c.1360C>T	p.Arg454Ter	p.R454*	ENST00000265081	NM_002439.4	454	Cga/Tga																																																																															
ROS1	6098	MSKCC	GRCh37	6	117641116	117641116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	150	386	0	ENST00000368508.3:c.5855G>A	p.Gly1952Glu	p.G1952E	ENST00000368508	NM_002944.2	1952	gGa/gAa																																																																															
PIM1	5292	MSKCC	GRCh37	6	37140900	37140900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773910971		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	236	340	0	ENST00000373509.5:c.736G>A	p.Glu246Lys	p.E246K	ENST00000373509	NM_002648.3	246	Gaa/Aaa																																																																															
MET	4233	MSKCC	GRCh37	7	116418997	116418997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	113	238	0	ENST00000397752.3:c.3508C>T	p.Arg1170Ter	p.R1170*	ENST00000397752	NM_000245.2	1170	Cga/Tga																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729394	41729394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	165	324	0	ENST00000242208.4:c.1135C>T	p.Arg379Trp	p.R379W	ENST00000242208	NM_002192.2	379	Cgg/Tgg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69136820	69136820	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	123	228	0	ENST00000288368.4:c.4734G>T	p.Lys1578Asn	p.K1578N	ENST00000288368	NM_024870.2	1578	aaG/aaT																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101908873	101908873	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs200595614		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	66	311	0	ENST00000374994.4:c.1237C>T	p.Arg413Ter	p.R413*	ENST00000374994	NM_004612.2	413	Cga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404555	8404555	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	129	234	0	ENST00000356435.5:c.4192C>A	p.Leu1398Ile	p.L1398I	ENST00000356435		1398	Ctc/Atc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209630	98209630	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779365332		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	115	328	0	ENST00000331920.6:c.3908G>A	p.Arg1303His	p.R1303H	ENST00000331920	NM_000264.3	1303	cGc/cAc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321322	1321322	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	168	316	0	ENST00000381566.1:c.433G>T	p.Asp145Tyr	p.D145Y	ENST00000381566		145	Gat/Tat																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53247028	53247028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	197	160	0	ENST00000375401.3:c.472G>A	p.Glu158Lys	p.E158K	ENST00000375401	NM_004187.3	158	Gaa/Aaa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115251256	115251256	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	120	256	0	ENST00000369535.4:c.470A>G	p.Tyr157Cys	p.Y157C	ENST00000369535	NM_002524.4	157	tAc/tGc																																																																															
SDHB	6390	MSKCC	GRCh37	1	17355141	17355141	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	161	297	0	ENST00000375499.3:c.377A>C	p.Lys126Thr	p.K126T	ENST00000375499	NM_003000.2	126	aAa/aCa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176145050	176145050	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	81	205	0	ENST00000367669.3:c.561C>A	p.Phe187Leu	p.F187L	ENST00000367669	NM_022457.5	187	ttC/ttA																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2489190	2489190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	128	319	0	ENST00000355716.4:c.95C>T	p.Ala32Val	p.A32V	ENST00000355716	NM_003820.2	32	gCc/gTc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939367	36939367	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	155	379	0	ENST00000361632.4:c.483C>A	p.Phe161Leu	p.F161L	ENST00000361632		161	ttC/ttA																																																																															
TET1	80312	MSKCC	GRCh37	10	70333311	70333311	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	170	293	0	ENST00000373644.4:c.1216G>T	p.Gly406Ter	p.G406*	ENST00000373644	NM_030625.2	406	Gga/Tga																																																																															
TET1	80312	MSKCC	GRCh37	10	70450655	70450655	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	48	297	1	ENST00000373644.4:c.5495C>A	p.Ser1832Ter	p.S1832*	ENST00000373644	NM_030625.2	1832	tCg/tAg																																																																															
ATM	472	MSKCC	GRCh37	11	108188128	108188128	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	111	191	0	ENST00000278616.4:c.6227T>G	p.Ile2076Ser	p.I2076S	ENST00000278616	NM_000051.3	2076	aTt/aGt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94219211	94219211	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	111	271	0	ENST00000323929.3:c.193A>C	p.Asn65His	p.N65H	ENST00000323929	NM_005591.3	65	Aat/Cat																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18477982	18477982	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	19	219	0	ENST00000266497.5:c.1222A>G	p.Thr408Ala	p.T408A	ENST00000266497		408	Aca/Gca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380289	25380289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	108	262	0	ENST00000256078.4:c.169G>A	p.Asp57Asn	p.D57N	ENST00000256078	NM_033360.2	57	Gac/Aac																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863306	57863306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	33	346	0	ENST00000228682.2:c.1401G>T	p.Met467Ile	p.M467I	ENST00000228682	NM_005269.2	467	atG/atT																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103519076	103519076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	150	327	0	ENST00000355739.4:c.2414G>A	p.Gly805Glu	p.G805E	ENST00000355739	NM_000123.3	805	gGa/gAa																																																																															
RB1	5925	MSKCC	GRCh37	13	48951127	48951127	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	80	193	0	ENST00000267163.4:c.1289T>G	p.Phe430Cys	p.F430C	ENST00000267163	NM_000321.2	430	tTt/tGt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30103666	30103666	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	114	273	1	ENST00000331968.5:c.1272G>T	p.Met424Ile	p.M424I	ENST00000331968	NM_002742.2	424	atG/atT																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68331828	68331828	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	26	244	0	ENST00000487270.1:c.424G>T	p.Asp142Tyr	p.D142Y	ENST00000487270	NM_133509.3	142	Gac/Tac																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66735674	66735674	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	122	254	0	ENST00000307102.5:c.495T>G	p.Ile165Met	p.I165M	ENST00000307102	NM_002755.3	165	atT/atG																																																																															
BLM	641	MSKCC	GRCh37	15	91292916	91292916	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	123	339	0	ENST00000355112.3:c.418G>T	p.Glu140Ter	p.E140*	ENST00000355112	NM_000057.2	140	Gaa/Taa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032152	10032152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	134	297	0	ENST00000330684.3:c.671C>A	p.Ser224Tyr	p.S224Y	ENST00000330684	NM_001134407.1	224	tCt/tAt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641109	3641109	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	175	347	0	ENST00000294008.3:c.2530G>T	p.Glu844Ter	p.E844*	ENST00000294008	NM_032444.2	844	Gaa/Taa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786198	3786198	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	141	265	0	ENST00000262367.5:c.4567T>G	p.Phe1523Val	p.F1523V	ENST00000262367	NM_004380.2	1523	Ttc/Gtc																																																																															
CDH1	999	MSKCC	GRCh37	16	68842617	68842617	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	59	351	0	ENST00000261769.5:c.553G>T	p.Glu185Ter	p.E185*	ENST00000261769	NM_004360.3	185	Gaa/Taa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351592	89351592	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	31	337	0	ENST00000301030.4:c.1358A>C	p.Lys453Thr	p.K453T	ENST00000301030	NM_001256183.1	453	aAa/aCa																																																																															
NF1	4763	MSKCC	GRCh37	17	29490231	29490231	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	43	286	0	ENST00000358273.4:c.316G>T	p.Glu106Ter	p.E106*	ENST00000358273	NM_001042492.2	106	Gaa/Taa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245349	41245349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	148	318	0	ENST00000357654.3:c.2199G>T	p.Glu733Asp	p.E733D	ENST00000357654	NM_007294.3	733	gaG/gaT																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448361	56448361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	171	410	0	ENST00000407977.2:c.286G>T	p.Asp96Tyr	p.D96Y	ENST00000407977		96	Gac/Tac																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554414	63554414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	58	378	0	ENST00000307078.5:c.325G>A	p.Asp109Asn	p.D109N	ENST00000307078	NM_004655.3	109	Gac/Aac																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10273404	10273404	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	45	286	0	ENST00000340748.4:c.899A>C	p.Glu300Ala	p.E300A	ENST00000340748		300	gAa/gCa																																																																															
CIC	23152	MSKCC	GRCh37	19	42794602	42794602	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	93	368	0	ENST00000575354.2:c.1682A>C	p.Glu561Ala	p.E561A	ENST00000575354	NM_015125.3	561	gAg/gCg																																																																															
CIC	23152	MSKCC	GRCh37	19	42794772	42794772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	144	351	0	ENST00000575354.2:c.1852G>A	p.Ala618Thr	p.A618T	ENST00000575354	NM_015125.3	618	Gcg/Acg																																																																															
INSR	3643	MSKCC	GRCh37	19	7267861	7267861	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	36	289	0	ENST00000302850.5:c.147G>T	p.Glu49Asp	p.E49D	ENST00000302850	NM_000208.2	49	gaG/gaT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212587251	212587251	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	39	305	0	ENST00000342788.4:c.750G>T	p.Met250Ile	p.M250I	ENST00000342788	NM_005235.2	250	atG/atT																																																																															
ALK	238	MSKCC	GRCh37	2	29606611	29606611	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	176	288	0	ENST00000389048.3:c.1269G>T	p.Lys423Asn	p.K423N	ENST00000389048	NM_004304.4	423	aaG/aaT																																																																															
XPO1	7514	MSKCC	GRCh37	2	61720150	61720150	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	29	246	0	ENST00000401558.2:c.1284G>T	p.Glu428Asp	p.E428D	ENST00000401558	NM_003400.3	428	gaG/gaT																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631427	67631427	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	26	302	0	ENST00000272342.5:c.1613T>G	p.Leu538Ter	p.L538*	ENST00000272342	NM_019002.3	538	tTa/tGa																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656822	45656822	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	31	333	1	ENST00000407780.3:c.334C>A	p.His112Asn	p.H112N	ENST00000407780	NM_001283052.1	112	Cac/Aac																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29449600	29449600	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs536891882		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	102	212	0	ENST00000544604.2:c.2801C>T	p.Pro934Leu	p.P934L	ENST00000544604	NM_001206998.1	934	cCg/cTg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170016856	170016856	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	109	210	0	ENST00000295797.4:c.1661C>A	p.Ser554Tyr	p.S554Y	ENST00000295797	NM_002740.5	554	tCt/tAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125218	47125218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	134	303	0	ENST00000409792.3:c.6052G>A	p.Asp2018Asn	p.D2018N	ENST00000409792	NM_014159.6	2018	Gac/Aac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549757	187549757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	142	279	0	ENST00000441802.2:c.4484G>A	p.Ser1495Asn	p.S1495N	ENST00000441802	NM_005245.3	1495	aGc/aAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584594	187584594	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	165	314	0	ENST00000441802.2:c.3439G>T	p.Glu1147Ter	p.E1147*	ENST00000441802	NM_005245.3	1147	Gaa/Taa																																																																															
REST	5978	MSKCC	GRCh37	4	57796561	57796561	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	158	329	0	ENST00000309042.7:c.1537T>A	p.Phe513Ile	p.F513I	ENST00000309042	NM_005612.4	513	Ttc/Atc																																																																															
ALB	213	MSKCC	GRCh37	4	74276107	74276107	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	24	215	0	ENST00000295897.4:c.694G>T	p.Glu232Ter	p.E232*	ENST00000295897	NM_000477.5	232	Gaa/Taa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31493345	31493345	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	147	271	0	ENST00000344624.3:c.1811T>G	p.Phe604Cys	p.F604C	ENST00000344624		604	tTt/tGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178527	56178527	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	134	288	0	ENST00000399503.3:c.3500A>G	p.Tyr1167Cys	p.Y1167C	ENST00000399503	NM_005921.1	1167	tAc/tGc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183316	56183316	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	175	296	0	ENST00000399503.3:c.4226T>G	p.Leu1409Ter	p.L1409*	ENST00000399503	NM_005921.1	1409	tTa/tGa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67593341	67593341	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	184	319	0	ENST00000274335.5:c.2087T>C	p.Leu696Pro	p.L696P	ENST00000274335		696	cTa/cCa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117687286	117687286	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs368975857		P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	125	284	0	ENST00000368508.3:c.2765G>T	p.Arg922Ile	p.R922I	ENST00000368508	NM_002944.2	922	aGa/aTa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117708128	117708128	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	99	277	0	ENST00000368508.3:c.2049A>C	p.Glu683Asp	p.E683D	ENST00000368508	NM_002944.2	683	gaA/gaC																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967887	93967888	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	103	280	0	ENST00000369303.4:c.2039dup	p.Leu680PhefsTer3	p.L680Ffs*3	ENST00000369303	NM_004440.3	680	ttg/ttTg																																																																															
MET	4233	MSKCC	GRCh37	7	116339723	116339723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	138	332	0	ENST00000397752.3:c.585C>A	p.Phe195Leu	p.F195L	ENST00000397752	NM_000245.2	195	ttC/ttA																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946113	13946113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	26	262	0	ENST00000405192.2:c.983C>A	p.Ser328Tyr	p.S328Y	ENST00000405192	NM_001163147.1	328	tCt/tAt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730087	41730087	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	154	350	0	ENST00000242208.4:c.442T>C	p.Ser148Pro	p.S148P	ENST00000242208	NM_002192.2	148	Tca/Cca																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145736932	145736932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	157	372	0	ENST00000428558.2:c.3509C>T	p.Pro1170Leu	p.P1170L	ENST00000428558	NM_004260.3	1170	cCc/cTc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68942856	68942856	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	162	315	0	ENST00000288368.4:c.668T>C	p.Val223Ala	p.V223A	ENST00000288368	NM_024870.2	223	gTt/gCt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980550	70980550	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	149	359	0	ENST00000276594.2:c.827A>G	p.Lys276Arg	p.K276R	ENST00000276594	NM_024504.3	276	aAa/aGa																																																																															
TEK	7010	MSKCC	GRCh37	9	27168600	27168600	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	87	232	0	ENST00000380036.4:c.472A>C	p.Asn158His	p.N158H	ENST00000380036	NM_000459.3	158	Aat/Cat																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054676	5054676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	108	302	2	ENST00000381652.3:c.728G>A	p.Cys243Tyr	p.C243Y	ENST00000381652	NM_004972.3	243	tGc/tAc																																																																															
CD274	29126	MSKCC	GRCh37	9	5457244	5457244	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	154	319	0	ENST00000381577.3:c.218A>G	p.Asp73Gly	p.D73G	ENST00000381577	NM_014143.3	73	gAc/gGc																																																																															
ATRX	546	MSKCC	GRCh37	X	76938481	76938481	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			58	110	136	0	ENST00000373344.5:c.2267A>C	p.Glu756Ala	p.E756A	ENST00000373344	NM_000489.3	756	gAa/gCa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906916	32906919	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-	rs80359277		P-0075716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	204	368	0	ENST00000380152.3:c.1310_1313del	p.Lys437IlefsTer22	p.K437Ifs*22	ENST00000380152		434	aAAAGa/aa																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0075716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	187	314	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0075716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	162	405	1	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225378279	225378279	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	76	280	0	ENST00000264414.4:c.616G>C	p.Glu206Gln	p.E206Q	ENST00000264414	NM_003590.4	206	Gag/Cag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112035	115112035	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	82	475	0	ENST00000257566.3:c.1705G>T	p.Gly569Ter	p.G569*	ENST00000257566	NM_016569.3	569	Gga/Tga																																																																															
FLT1	2321	MSKCC	GRCh37	13	28959150	28959150	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	105	317	0	ENST00000282397.4:c.1988T>A	p.Leu663His	p.L663H	ENST00000282397	NM_002019.4	663	cTc/cAc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988281	36988281	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	63	390	0	ENST00000354822.5:c.372G>T	p.Met124Ile	p.M124I	ENST00000354822	NM_001079668.2	124	atG/atT																																																																															
MAX	4149	MSKCC	GRCh37	14	65569022	65569022	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0075716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	86	299	0	ENST00000358664.4:c.36C>G	p.Asp12Glu	p.D12E	ENST00000358664	NM_002382.4	12	gaC/gaG																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636876	176636876	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	252	375	0	ENST00000439151.2:c.1476G>T	p.Lys492Asn	p.K492N	ENST00000439151	NM_022455.4	492	aaG/aaT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043928	180043935	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGCCAC	CTGGCCAC	-			P-0075716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	67	365	0	ENST00000261937.6:c.3061_3068del	p.Val1021ArgfsTer32	p.V1021Rfs*32	ENST00000261937	NM_182925.4	1021	GTGGCCAGa/a																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739881	41739881	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761497837		P-0075716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	184	341	0	ENST00000242208.4:c.92C>T	p.Ala31Val	p.A31V	ENST00000242208	NM_002192.2	31	gCg/gTg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0075740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	144	237	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0075740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	275	381	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0075740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	190	364	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112154999	112154999	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	74	288	0	ENST00000257430.4:c.1270C>T	p.Gln424Ter	p.Q424*	ENST00000257430	NM_000038.5	424	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0075740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	88	366	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482793	67482794	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTGAAT			P-0075740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	191	356	0	ENST00000327367.4:c.1198_1203dup	p.Leu400_Asn401dup	p.L400_N401dup	ENST00000327367	NM_005902.3	400	-/CTGAAT																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120207	70120207	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	195	396	0	ENST00000245479.2:c.1212del	p.Ser405AlafsTer65	p.S405Afs*65	ENST00000245479	NM_000346.3	403	agC/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0075743-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	252	274	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0075743-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	162	238	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0075743-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	117	241	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0075743-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	133	239	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075743-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	150	136	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0075744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	68	290	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112155042	112155042	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs863225310		P-0075744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	119	278	0	ENST00000257430.4:c.1312+1G>A		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0075744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	60	210	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NF2	4771	MSKCC	GRCh37	22	30051628	30051629	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0075744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	82	243	0	ENST00000338641.4:c.562_563del	p.Ile188TyrfsTer14	p.I188Yfs*14	ENST00000338641	NM_000268.3	188	ATt/t																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230610	46230610	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	70	316	0	ENST00000334344.6:c.859C>G	p.Leu287Val	p.L287V	ENST00000334344	NM_152641.2	287	Ctt/Gtt																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0075745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	58	203	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	93	217	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175618	112175618	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	172	411	0	ENST00000257430.4:c.4328del	p.Pro1443LeufsTer30	p.P1443Lfs*30	ENST00000257430	NM_000038.5	1443	Cct/ct																																																																															
KIT	3815	MSKCC	GRCh37	4	55524208	55524209	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0075745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	82	264	0	ENST00000288135.5:c.29_30del	p.Phe10SerfsTer45	p.F10Sfs*45	ENST00000288135	NM_000222.2	9	gaTTtt/gatt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0075755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	190	449	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0075755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	133	233	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176631288	176631289	+	missense_variant	Missense_Mutation	DNP	CA	CA	GT			P-0075755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	149	370	0	ENST00000439151.2:c.1231_1232delinsGT	p.His411Val	p.H411V	ENST00000439151	NM_022455.4	411	CAt/GTt																																																																															
KDR	3791	MSKCC	GRCh37	4	55964885	55964885	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	70	223	0	ENST00000263923.4:c.2352C>G	p.Ile784Met	p.I784M	ENST00000263923	NM_002253.2	784	atC/atG																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14031702	14031702	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	68	306	0	ENST00000311895.7:c.1891G>C	p.Glu631Gln	p.E631Q	ENST00000311895	NM_005236.2	631	Gaa/Caa																																																																															
TET1	80312	MSKCC	GRCh37	10	70451405	70451405	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	85	397	0	ENST00000373644.4:c.6245A>G	p.Glu2082Gly	p.E2082G	ENST00000373644	NM_030625.2	2082	gAg/gGg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638839	176638839	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777542356		P-0075755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	75	394	0	ENST00000439151.2:c.3439G>A	p.Glu1147Lys	p.E1147K	ENST00000439151	NM_022455.4	1147	Gaa/Aaa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739578	145739578	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	97	432	0	ENST00000428558.2:c.1873T>A	p.Cys625Ser	p.C625S	ENST00000428558	NM_004260.3	625	Tgc/Agc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096175	178096175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	106	411	0	ENST00000397062.3:c.1156G>A	p.Gly386Arg	p.G386R	ENST00000397062	NM_006164.4	386	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112178355	112178355	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	61	394	0	ENST00000257430.4:c.7064del	p.Ser2355Ter	p.S2355*	ENST00000257430	NM_000038.5	2355	tCa/ta																																																																															
ATM	472	MSKCC	GRCh37	11	108199899	108199899	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0075758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			79	145	286	0	ENST00000278616.4:c.7242del	p.Ala2415LeufsTer3	p.A2415Lfs*3	ENST00000278616	NM_000051.3	2414	cAa/ca																																																																															
STK11	6794	MSKCC	GRCh37	19	1226617	1226617	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754853898		P-0062724-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			169	169	307	0	ENST00000326873.7:c.1273C>T	p.Arg425Cys	p.R425C	ENST00000326873	NM_000455.4	425	Cgc/Tgc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696435	47696435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062724-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			241	238	312	0	ENST00000347630.2:c.388G>A	p.Asp130Asn	p.D130N	ENST00000347630	NM_001007230.1	130	Gac/Aac																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2060868	2060868	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062724-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			512	226	342	0	ENST00000349721.2:c.1574G>T	p.Arg525Leu	p.R525L	ENST00000349721	NM_003070.3	525	cGt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0062818-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			344	281	401	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971194	21971194	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs561034503		P-0062818-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			278	353	333	0	ENST00000304494.5:c.164G>T	p.Gly55Val	p.G55V	ENST00000304494	NM_000077.4	55	gGc/gTc																																																																															
B2M	567	MSKCC	GRCh37	15	45007818	45007818	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0062818-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			268	94	379	0	ENST00000558401.1:c.265G>T	p.Glu89Ter	p.E89*	ENST00000558401	NM_004048.2	89	Gaa/Taa																																																																															
STK11	6794	MSKCC	GRCh37	19	1226488	1226488	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062818-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			364	117	357	0	ENST00000326873.7:c.1144C>T	p.Gln382Ter	p.Q382*	ENST00000326873	NM_000455.4	382	Cag/Tag																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46740278	46740296	+	frameshift_variant	Frame_Shift_Del	DEL	CCGGCTGGTCATGTTTGAC	CCGGCTGGTCATGTTTGAC	-			P-0062818-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			490	263	352	0	ENST00000371975.4:c.1760_1778del	p.Arg587LeufsTer49	p.R587Lfs*49	ENST00000371975	NM_003579.3	586	aaCCGGCTGGTCATGTTTGAC/aa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59820424	59820424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062818-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			376	166	265	0	ENST00000259008.2:c.2329C>A	p.Arg777Ser	p.R777S	ENST00000259008	NM_032043.2	777	Cgt/Agt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081687	143081687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062818-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			256	91	279	0	ENST00000262992.4:c.1387G>A	p.Asp463Asn	p.D463N	ENST00000262992	NM_001101669.1	463	Gat/Aat																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31451639	31451639	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0062818-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			410	56	217	0	ENST00000344624.3:c.2682+1G>T		p.X894_splice	ENST00000344624		894																																																																																
HGF	3082	MSKCC	GRCh37	7	81388026	81388026	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062818-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			146	31	191	0	ENST00000222390.5:c.349G>C	p.Asp117His	p.D117H	ENST00000222390	NM_000601.4	117	Gac/Cac																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508921	106508921	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062818-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			535	117	409	0	ENST00000359195.3:c.916del	p.Val306TyrfsTer10	p.V306Yfs*10	ENST00000359195	NM_002649.2	305	gtG/gt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806059	1806059	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0062818-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			448	80	293	0	ENST00000260795.2:c.1078G>A	p.Glu360Lys	p.E360K	ENST00000260795		360	Gag/Aag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99491874	99491874	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062818-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			681	102	353	0	ENST00000268035.6:c.3659A>C	p.Gln1220Pro	p.Q1220P	ENST00000268035	NM_000875.3	1220	cAa/cCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0074183-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			94	65	156	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873835	35873835	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs923187160		P-0074183-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			281	204	172	0	ENST00000216797.5:c.16G>A	p.Glu6Lys	p.E6K	ENST00000216797	NM_020529.2	6	Gag/Aag																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522416	176522416	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519792		P-0074183-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			180	518	296	0	ENST00000292408.4:c.1605C>G	p.Asn535Lys	p.N535K	ENST00000292408	NM_213647.1	535	aaC/aaG																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356306	66356306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074183-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			333	249	303	0	ENST00000273854.3:c.1191G>T	p.Lys397Asn	p.K397N	ENST00000273854	NM_004439.5	397	aaG/aaT																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206646597	206646597	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0074183-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	439	259	0	ENST00000367120.3:c.27G>A	p.Trp9Ter	p.W9*	ENST00000367120	NM_014002.3	9	tgG/tgA																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752845	57752845	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074183-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			178	172	273	0	ENST00000274289.3:c.1083G>C	p.Lys361Asn	p.K361N	ENST00000274289	NM_006622.3	361	aaG/aaC																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55146575	55146575	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074183-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			194	173	285	0	ENST00000257290.5:c.2249A>T	p.Glu750Val	p.E750V	ENST00000257290	NM_006206.4	750	gAg/gTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953921	32953926	+	protein_altering_variant	In_Frame_Del	DEL	ATATTC	ATATTC	TTT			P-0074183-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			58	99	278	0	ENST00000380152.3:c.8988_8993delinsTTT	p.Leu2996_Ser2998delinsPhePhe	p.L2996_S2998delinsFF	ENST00000380152		2996	ttATATTCt/ttTTTt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967218	93967218	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074183-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			115	80	198	0	ENST00000369303.4:c.2134G>C	p.Glu712Gln	p.E712Q	ENST00000369303	NM_004440.3	712	Gag/Cag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389398	8389398	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074183-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			221	110	207	1	ENST00000356435.5:c.4220G>C	p.Gly1407Ala	p.G1407A	ENST00000356435		1407	gGa/gCa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99149917	99149917	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074183-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			366	216	272	0	ENST00000074304.5:c.229C>G	p.Gln77Glu	p.Q77E	ENST00000074304	NM_001134224.1	77	Cag/Gag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739627	145739627	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074183-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			700	283	340	0	ENST00000428558.2:c.1824C>A	p.His608Gln	p.H608Q	ENST00000428558	NM_004260.3	608	caC/caA																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31016191	31016191	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074183-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			345	244	289	0	ENST00000375687.4:c.437C>G	p.Ser146Cys	p.S146C	ENST00000375687	NM_015338.5	146	tCc/tGc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47425597	47425597	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074183-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			349	214	276	0	ENST00000404338.3:c.3665T>C	p.Leu1222Pro	p.L1222P	ENST00000404338	NM_004491.4	1222	cTa/cCa																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488963	231488963	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074183-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			558	183	244	0	ENST00000295050.7:c.1326G>C	p.Gln442His	p.Q442H	ENST00000295050	NM_032018.5	442	caG/caC																																																																															
TERT	7015	MSKCC	GRCh37	5	1293592	1293592	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1013341756		P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	52	409	0	ENST00000310581.5:c.1409G>A	p.Arg470His	p.R470H	ENST00000310581	NM_198253.2	470	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	65	423	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577541	7577541	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs786201762		P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	53	369	0	ENST00000269305.4:c.740A>T	p.Asn247Ile	p.N247I	ENST00000269305	NM_001126112.2	247	aAc/aTc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589808	28589808	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs568745490		P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	106	329	0	ENST00000241453.7:c.2572G>A	p.Glu858Lys	p.E858K	ENST00000241453	NM_004119.2	858	Gaa/Aaa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18715711	18715711	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1278385426		P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	75	429	0	ENST00000266497.5:c.3542C>T	p.Ala1181Val	p.A1181V	ENST00000266497		1181	gCc/gTc																																																																															
B2M	567	MSKCC	GRCh37	15	45003746	45003746	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	76	374	0	ENST00000558401.1:c.2T>A	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	aTg/aAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492937	56492937	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	39	339	0	ENST00000407977.2:c.2T>C	p.Met1?	p.M1?	ENST00000407977		1	aTg/aCg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163553	32163554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs777647776		P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	29	362	2	ENST00000375023.3:c.5672dup	p.Gly1892ArgfsTer24	p.G1892Rfs*24	ENST00000375023	NM_004557.3	1891	ggc/ggGc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40710643	40710643	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151076965		P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	43	379	1	ENST00000373198.4:c.4208G>A	p.Arg1403His	p.R1403H	ENST00000373198	NM_133170.3	1403	cGt/cAt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296139	15296139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780152379		P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	98	399	0	ENST00000263388.2:c.2225C>T	p.Pro742Leu	p.P742L	ENST00000263388	NM_000435.2	742	cCg/cTg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78936822	78936822	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1480686908		P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	60	422	0	ENST00000306801.3:c.3904G>A	p.Gly1302Ser	p.G1302S	ENST00000306801	NM_020761.2	1302	Ggc/Agc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966873	25966873	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1271466699		P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	152	450	1	ENST00000435504.4:c.2333del	p.Pro778GlnfsTer21	p.P778Qfs*21	ENST00000435504		778	cCa/ca																																																																															
ETV6	2120	MSKCC	GRCh37	12	12037475	12037475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs724159946		P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	58	404	1	ENST00000396373.4:c.1106G>A	p.Arg369Gln	p.R369Q	ENST00000396373	NM_001987.4	369	cGg/cAg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710593	117710593	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145765584		P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	70	443	0	ENST00000368508.3:c.1679G>A	p.Arg560His	p.R560H	ENST00000368508	NM_002944.2	560	cGc/cAc																																																																															
KDR	3791	MSKCC	GRCh37	4	55958789	55958789	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	41	263	0	ENST00000263923.4:c.3064C>T	p.Arg1022Ter	p.R1022*	ENST00000263923	NM_002253.2	1022	Cga/Tga																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027503	48027503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	103	348	0	ENST00000234420.5:c.2381C>T	p.Ala794Val	p.A794V	ENST00000234420	NM_000179.2	794	gCc/gTc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78914339	78914339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147686617		P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	54	354	0	ENST00000306801.3:c.2963G>A	p.Arg988Gln	p.R988Q	ENST00000306801	NM_020761.2	988	cGg/cAg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660462	227660462	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143760685		P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	82	388	0	ENST00000305123.5:c.2993G>A	p.Arg998His	p.R998H	ENST00000305123	NM_005544.2	998	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577553	7577553	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs730882006		P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	55	355	0	ENST00000269305.4:c.728T>C	p.Met243Thr	p.M243T	ENST00000269305	NM_001126112.2	243	aTg/aCg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141559308	141559308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	108	418	0	ENST00000220592.5:c.1493C>T	p.Ala498Val	p.A498V	ENST00000220592	NM_012154.3	498	gCg/gTg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665309	138665309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	61	409	0	ENST00000330315.3:c.256G>A	p.Ala86Thr	p.A86T	ENST00000330315	NM_023067.3	86	Gcg/Acg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	78	284	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520705	176520705	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141384037		P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	109	339	0	ENST00000292408.4:c.1448G>A	p.Arg483His	p.R483H	ENST00000292408	NM_213647.1	483	cGt/cAt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670626	30670626	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1271670724		P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	62	390	1	ENST00000376406.3:c.5894C>T	p.Pro1965Leu	p.P1965L	ENST00000376406	NM_014641.2	1965	cCg/cTg																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225582	26225582	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752115135		P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	59	503	0	ENST00000360408.1:c.200C>T	p.Pro67Leu	p.P67L	ENST00000360408	NM_003532.2	67	cCg/cTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11186732	11186732	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770298810		P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	67	363	0	ENST00000361445.4:c.6473C>T	p.Pro2158Leu	p.P2158L	ENST00000361445	NM_004958.3	2158	cCg/cTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376254	15376254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	41	245	0	ENST00000263377.2:c.760C>T	p.Pro254Ser	p.P254S	ENST00000263377	NM_058243.2	254	Ccc/Tcc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29068917	29068917	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	75	375	0	ENST00000282397.4:c.64G>T	p.Gly22Ter	p.G22*	ENST00000282397	NM_002019.4	22	Gga/Tga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347306	89347306	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1447185596		P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	124	420	0	ENST00000301030.4:c.5644G>A	p.Val1882Ile	p.V1882I	ENST00000301030	NM_001256183.1	1882	Gtc/Atc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78414985	78414985	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	40	269	0	ENST00000370768.2:c.1781G>A	p.Gly594Asp	p.G594D	ENST00000370768	NM_003902.3	594	gGt/gAt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18544128	18544128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	26	348	0	ENST00000266497.5:c.1945C>T	p.Pro649Ser	p.P649S	ENST00000266497		649	Cca/Tca																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279756	29279756	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	32	188	0	ENST00000544604.2:c.2T>C	p.Met1?	p.M1?	ENST00000544604	NM_001206998.1	1	aTg/aCg																																																																															
APC	324	MSKCC	GRCh37	5	112175252	112175252	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	64	349	0	ENST00000257430.4:c.3961A>G	p.Ser1321Gly	p.S1321G	ENST00000257430	NM_000038.5	1321	Agc/Ggc																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690206	33690206	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	56	407	0	ENST00000308377.4:c.621del	p.Pro208LeufsTer5	p.P208Lfs*5	ENST00000308377	NM_152270.3	207	ttT/tt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206891	162206891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	56	400	0	ENST00000366898.1:c.784G>T	p.Asp262Tyr	p.D262Y	ENST00000366898	NM_004562.2	262	Gac/Tac																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133534	55133534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	42	358	0	ENST00000257290.5:c.838G>A	p.Ala280Thr	p.A280T	ENST00000257290	NM_006206.4	280	Gcc/Acc																																																																															
FH	2271	MSKCC	GRCh37	1	241680481	241680481	+	splice_donor_variant	Splice_Site	SNP	C	C	G	rs878853691		P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	33	284	0	ENST00000366560.3:c.267+1G>C		p.X89_splice	ENST00000366560	NM_000143.3	89																																																																																
TP53BP1	7158	MSKCC	GRCh37	15	43707986	43707986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	83	415	0	ENST00000382044.4:c.4895G>A	p.Arg1632Gln	p.R1632Q	ENST00000382044	NM_001141980.1	1632	cGg/cAg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69136792	69136792	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	33	301	0	ENST00000288368.4:c.4708-2A>G		p.X1570_splice	ENST00000288368	NM_024870.2	1570																																																																																
AR	367	MSKCC	GRCh37	X	66766178	66766178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	44	217	0	ENST00000374690.3:c.1190G>A	p.Ser397Asn	p.S397N	ENST00000374690	NM_000044.3	397	aGc/aAc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467905	99467905	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	117	333	0	ENST00000268035.6:c.2774A>C	p.Gln925Pro	p.Q925P	ENST00000268035	NM_000875.3	925	cAg/cCg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88672118	88672118	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	21	175	0	ENST00000372037.3:c.652A>G	p.Ser218Gly	p.S218G	ENST00000372037	NM_004329.2	218	Agt/Ggt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115266536	115266536	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	54	336	0	ENST00000438362.2:c.1979A>G	p.Glu660Gly	p.E660G	ENST00000438362	NM_001242891.1	660	gAg/gGg																																																																															
RAC2	5880	MSKCC	GRCh37	22	37637679	37637679	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	74	472	0	ENST00000249071.6:c.55C>A	p.Leu19Ile	p.L19I	ENST00000249071	NM_002872.4	19	Ctt/Att																																																																															
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	69	379	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045006	47045006	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	26	402	0	ENST00000329236.7:c.2098C>T	p.Gln700Ter	p.Q700*	ENST00000329236	NM_001204466.1	700	Cag/Tag																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149499667	149499667	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	34	282	0	ENST00000261799.4:c.2606G>A	p.Trp869Ter	p.W869*	ENST00000261799	NM_002609.3	869	tGg/tAg																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727483	66727483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	79	328	0	ENST00000307102.5:c.199G>T	p.Asp67Tyr	p.D67Y	ENST00000307102	NM_002755.3	67	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0075427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	84	274	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026867	71026867	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	185	290	0	ENST00000318789.4:c.1355T>C	p.Ile452Thr	p.I452T	ENST00000318789	NM_032682.5	452	aTt/aCt																																																																															
KIT	3815	MSKCC	GRCh37	4	55594270	55594270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	73	204	0	ENST00000288135.5:c.1973G>A	p.Gly658Glu	p.G658E	ENST00000288135	NM_000222.2	658	gGa/gAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0075749-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	8	252	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0075750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	57	462	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748290	41748290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	48	397	0	ENST00000226382.2:c.479C>T	p.Ala160Val	p.A160V	ENST00000226382	NM_003924.3	160	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0075750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	102	483	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633632	69633632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	34	332	0	ENST00000334134.2:c.70C>T	p.Arg24Trp	p.R24W	ENST00000334134	NM_005247.2	24	Cgg/Tgg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953214	81953214	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369516453		P-0075750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	42	438	0	ENST00000359376.3:c.2180G>A	p.Arg727Gln	p.R727Q	ENST00000359376	NM_002661.3	727	cGa/cAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151848622	151848622	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376118166		P-0075750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	68	464	0	ENST00000262189.6:c.12571G>A	p.Ala4191Thr	p.A4191T	ENST00000262189	NM_170606.2	4191	Gca/Aca																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188078	11188078	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	52	507	0	ENST00000361445.4:c.6016G>C	p.Val2006Leu	p.V2006L	ENST00000361445	NM_004958.3	2006	Gtc/Ctc																																																																															
ATM	472	MSKCC	GRCh37	11	108186602	108186602	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	50	429	0	ENST00000278616.4:c.6059G>T	p.Gly2020Val	p.G2020V	ENST00000278616	NM_000051.3	2020	gGc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	155	297	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119038	70119038	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	168	513	0	ENST00000245479.2:c.611del	p.Phe204SerfsTer15	p.F204Sfs*15	ENST00000245479	NM_000346.3	204	Ttc/tc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519969		P-0075752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	169	400	0	ENST00000347630.2:c.392G>C	p.Trp131Ser	p.W131S	ENST00000347630	NM_001007230.1	131	tGg/tCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435294	49435294	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	244	430	0	ENST00000301067.7:c.6259del	p.Gln2087ArgfsTer7	p.Q2087Rfs*7	ENST00000301067	NM_003482.3	2087	Cag/ag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47158221	47158221	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	45	299	0	ENST00000409792.3:c.4478A>T	p.Asp1493Val	p.D1493V	ENST00000409792	NM_014159.6	1493	gAt/gTt																																																																															
MYC	4609	MSKCC	GRCh37	8	128751144	128751145	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0075752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	147	473	0	ENST00000377970.2:c.682dup	p.Ser228PhefsTer30	p.S228Ffs*30	ENST00000377970	NM_002467.4	227	-/T																																																																															
LATS2	26524	MSKCC	GRCh37	13	21565531	21565531	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1321418369		P-0075753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	125	482	2	ENST00000382592.4:c.355C>T	p.Arg119Ter	p.R119*	ENST00000382592	NM_014572.2	119	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0075753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	237	282	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
REST	5978	MSKCC	GRCh37	4	57798079	57798079	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	101	358	0	ENST00000309042.7:c.3055C>G	p.Leu1019Val	p.L1019V	ENST00000309042	NM_005612.4	1019	Cta/Gta																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134627	41134627	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	119	412	0	ENST00000379561.5:c.1001A>T	p.Glu334Val	p.E334V	ENST00000379561	NM_002015.3	334	gAa/gTa																																																																															
JUN	3725	MSKCC	GRCh37	1	59247934	59247934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071773-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	19	537	0	ENST00000371222.2:c.809G>A	p.Arg270Gln	p.R270Q	ENST00000371222	NM_002228.3	270	cGa/cAa																																																																															
RARA	5914	MSKCC	GRCh37	17	38510639	38510639	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071773-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	125	442	0	ENST00000254066.5:c.893A>G	p.His298Arg	p.H298R	ENST00000254066	NM_000964.3	298	cAc/cGc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120326	94120326	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370195460		P-0071773-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	159	464	0	ENST00000369303.4:c.725C>T	p.Ala242Val	p.A242V	ENST00000369303	NM_004440.3	242	gCg/gTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39916574	39916574	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0071773-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	13	177	0	ENST00000378444.4:c.4429G>A	p.Glu1477Lys	p.E1477K	ENST00000378444	NM_001123385.1	1477	Gaa/Aaa																																																																															
MGA	23269	MSKCC	GRCh37	15	42021448	42021449	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0071773-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	186	438	0	ENST00000219905.7:c.3746_3747del	p.Glu1249GlyfsTer24	p.E1249Gfs*24	ENST00000219905	NM_001164273.1	1248	aaAGag/aaag																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18272079	18272099	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGTCCGCAGAGGCCGCGGGG	CTGTCCGCAGAGGCCGCGGGG	-			P-0071773-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	101	532	0	ENST00000222254.8:c.599-9_610del		p.X200_splice	ENST00000222254	NM_005027.3	200																																																																																
TNFAIP3	7128	MSKCC	GRCh37	6	138201312	138201312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071773-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	141	450	0	ENST00000237289.4:c.2011G>A	p.Glu671Lys	p.E671K	ENST00000237289	NM_001270507.1	671	Gaa/Aaa																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0074492-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			453	195	362	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0074492-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			50	279	376	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																															
WT1	7490	MSKCC	GRCh37	11	32414250	32414250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121907901		P-0074492-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			287	250	354	0	ENST00000332351.3:c.1301G>A	p.Arg434His	p.R434H	ENST00000332351	NM_024426.4	434	cGt/cAt																																																																															
KDR	3791	MSKCC	GRCh37	4	55955090	55955090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074492-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			172	121	323	0	ENST00000263923.4:c.3455C>G	p.Thr1152Arg	p.T1152R	ENST00000263923	NM_002253.2	1152	aCg/aGg																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727489	66727489	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074492-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			312	157	379	0	ENST00000307102.5:c.205G>C	p.Glu69Gln	p.E69Q	ENST00000307102	NM_002755.3	69	Gag/Cag																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67201741	67201741	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074492-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			505	163	492	0	ENST00000312629.5:c.1042T>C	p.Cys348Arg	p.C348R	ENST00000312629	NM_003952.2	348	Tgt/Cgt																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045811	26045811	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074492-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			528	188	535	0	ENST00000540144.1:c.173C>G	p.Ser58Cys	p.S58C	ENST00000540144	NM_003531.2	58	tCc/tGc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739641	41739641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074492-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			329	98	335	0	ENST00000242208.4:c.332C>T	p.Ala111Val	p.A111V	ENST00000242208	NM_002192.2	111	gCa/gTa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575148	48575148	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0075087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			329	8	0	0	ENST00000342988.3:c.342T>G	p.Tyr114Ter	p.Y114*	ENST00000342988	NM_005359.5	114	taT/taG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0075087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			320	19	265	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056206	27056215	+	frameshift_variant	Frame_Shift_Del	DEL	ACTCGCAGCA	ACTCGCAGCA	-			P-0075087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			528	11	0	0	ENST00000324856.7:c.1204_1213del	p.Ser402ArgfsTer28	p.S402Rfs*28	ENST00000324856	NM_006015.4	401	tACTCGCAGCAa/ta																																																																															
FANCA	2175	MSKCC	GRCh37	16	89882721	89882996	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGAGCGCCCCGCGGGCGGCGGCTGGGGGCGTCCGCCCAGGCGCAGGAGGGGCCGGGTCCGAGGCAGCCGCGCCGCCCCAGCCGGGCGCCCACCCCGCACAGCCCCCCGGGCGCGGCGTCCGGGGATCCGACCGGCGGAGGCTCTGGCGGGAAGGGATCGGGGAACCGGCGAAACCGTCCCGGGCCGGACGCCGCCCACTCCCGCGGCCTGCCGCGCCCACCTACCCAGCAGCTCGGCCCAGGCCCTCCGGCGGCCCCCTGGGTCCTGGCCCGAGGC	GGAGCGCCCCGCGGGCGGCGGCTGGGGGCGTCCGCCCAGGCGCAGGAGGGGCCGGGTCCGAGGCAGCCGCGCCGCCCCAGCCGGGCGCCCACCCCGCACAGCCCCCCGGGCGCGGCGTCCGGGGATCCGACCGGCGGAGGCTCTGGCGGGAAGGGATCGGGGAACCGGCGAAACCGTCCCGGGCCGGACGCCGCCCACTCCCGCGGCCTGCCGCGCCCACCTACCCAGCAGCTCGGCCCAGGCCCTCCGGCGGCCCCCTGGGTCCTGGCCCGAGGC	-			P-0075087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			37	15	28	0	ENST00000389301.3:c.28_79+224del		p.X10_splice	ENST00000389301	NM_000135.2	10																																																																																
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519922		P-0075089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			550	19	364	0	ENST00000397062.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000397062	NM_006164.4	79	Gag/Aag																																																																															
STK11	6794	MSKCC	GRCh37	19	1220371	1220371	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0075089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			441	35	361	0	ENST00000326873.7:c.465del		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
YAP1	10413	MSKCC	GRCh37	11	102098217	102098217	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			447	28	309	0	ENST00000282441.5:c.1181G>C	p.Arg394Pro	p.R394P	ENST00000282441	NM_001130145.2	394	cGa/cCa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921424	39921424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			226	23	138	0	ENST00000378444.4:c.4396C>G	p.Leu1466Val	p.L1466V	ENST00000378444	NM_001123385.1	1466	Ctt/Gtt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832000	72832000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075089-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			526	31	380	0	ENST00000268489.5:c.4581C>A	p.Phe1527Leu	p.F1527L	ENST00000268489	NM_006885.3	1527	ttC/ttA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249017	55249018	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCACGT			P-0075554-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			402	137	399	0	ENST00000275493.2:c.2316_2321dup	p.His773_Val774dup	p.H773_V774dup	ENST00000275493	NM_005228.3	773	ccc/ccCCACGTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0075681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	302	365	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0075681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			78	133	340	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0075681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	181	360	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
CBL	867	MSKCC	GRCh37	11	119170363	119170363	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	57	426	0	ENST00000264033.4:c.2593A>G	p.Met865Val	p.M865V	ENST00000264033	NM_005188.3	865	Atg/Gtg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67662390	67662390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	158	401	0	ENST00000264010.4:c.1636C>T	p.His546Tyr	p.H546Y	ENST00000264010	NM_006565.3	546	Cac/Tac																																																																															
RB1	5925	MSKCC	GRCh37	13	48881477	48881477	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	141	320	1	ENST00000267163.4:c.199C>A	p.Pro67Thr	p.P67T	ENST00000267163	NM_000321.2	67	Cca/Aca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139418321	139418321	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	99	378	0	ENST00000277541.6:c.251A>C	p.Asp84Ala	p.D84A	ENST00000277541	NM_017617.3	84	gAc/gCc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044857	47044857	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	87	434	0	ENST00000329236.7:c.1949del	p.Leu650ArgfsTer74	p.L650Rfs*74	ENST00000329236	NM_001204466.1	650	cTg/cg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0075683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	199	319	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155611	56155612	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGTCCAGGCA			P-0075683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	118	312	0	ENST00000399503.3:c.706_716dup	p.Ser239ArgfsTer28	p.S239Rfs*28	ENST00000399503	NM_005921.1	235	gag/gAGGTCCAGGCAag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183343	56183343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	74	246	0	ENST00000399503.3:c.4253C>T	p.Pro1418Leu	p.P1418L	ENST00000399503	NM_005921.1	1418	cCt/cTt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65332662	65332662	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	114	376	0	ENST00000342505.4:c.877A>C	p.Ile293Leu	p.I293L	ENST00000342505	NM_002227.2	293	Att/Ctt																																																																															
CTR9	9646	MSKCC	GRCh37	11	10800537	10800537	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	70	316	0	ENST00000361367.2:c.3407G>C	p.Arg1136Thr	p.R1136T	ENST00000361367	NM_014633.3	1136	aGa/aCa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981500	201981500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	46	368	0	ENST00000359651.3:c.414G>A	p.Trp138Ter	p.W138*	ENST00000359651		138	tgG/tgA																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18576934	18576934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765821860		P-0075684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	49	315	0	ENST00000266497.5:c.2342G>A	p.Arg781His	p.R781H	ENST00000266497		781	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	42	283	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281758	49281758	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777488065		P-0075684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	41	416	0	ENST00000282018.3:c.805G>A	p.Val269Ile	p.V269I	ENST00000282018	NM_020377.2	269	Gtc/Atc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473779	67473779	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs387906850		P-0075684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			32	95	320	0	ENST00000327367.4:c.859C>T	p.Arg287Trp	p.R287W	ENST00000327367	NM_005902.3	287	Cgg/Tgg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38944547	38944547	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0075684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			54	32	280	0	ENST00000357387.3:c.4913+1G>A		p.X1638_splice	ENST00000357387	NM_152756.3	1638																																																																																
SMAD2	4087	MSKCC	GRCh37	18	45423019	45423019	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			44	71	423	0	ENST00000262160.6:c.109G>T	p.Glu37Ter	p.E37*	ENST00000262160	NM_005901.5	37	Gaa/Taa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349681	15349707	+	inframe_deletion	In_Frame_Del	DEL	TGCTGCTGCTGCTGTTGCTCCTGGCGC	TGCTGCTGCTGCTGTTGCTCCTGGCGC	-			P-0075684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	19	442	0	ENST00000263377.2:c.3867_3893del	p.Arg1290_Gln1298del	p.R1290_Q1298del	ENST00000263377	NM_058243.2	1289	caGCGCCAGGAGCAACAGCAGCAGCAGCAa/caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0075685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	29	310	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0075685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	32	417	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	16	433	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81554312	81554313	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTA			P-0075685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			62	10	313	0	ENST00000298171.2:c.332_333insTTA	p.Thr111_Arg112insTyr	p.T111_R112insY	ENST00000298171	NM_000369.2	111	acc/acTTAc																																																																															
KDR	3791	MSKCC	GRCh37	4	55968167	55968167	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	13	281	0	ENST00000263923.4:c.2163C>A	p.Asn721Lys	p.N721K	ENST00000263923	NM_002253.2	721	aaC/aaA																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482861	67482861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	40	381	0	ENST00000327367.4:c.1265C>T	p.Ser422Phe	p.S422F	ENST00000327367	NM_005902.3	422	tCc/tTc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18943191	18943191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	10	274	0	ENST00000262803.5:c.173G>A	p.Gly58Asp	p.G58D	ENST00000262803	NM_002911.3	58	gGc/gAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37864671	37864671	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	16	407	0	ENST00000269571.5:c.323T>G	p.Phe108Cys	p.F108C	ENST00000269571		108	tTt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578224	7578224	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	80	381	0	ENST00000269305.4:c.625del	p.Arg209GlufsTer38	p.R209Efs*38	ENST00000269305	NM_001126112.2	209	Aga/ga																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78899222	78899222	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150835528		P-0075699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	23	307	0	ENST00000306801.3:c.2861C>T	p.Thr954Met	p.T954M	ENST00000306801	NM_020761.2	954	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			227	52	290	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085678	16085678	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs747134309		P-0075082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			158	47	306	0	ENST00000281043.3:c.854G>T	p.Arg285Leu	p.R285L	ENST00000281043	NM_005378.4	285	cGg/cTg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225378309	225378309	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			116	22	199	0	ENST00000264414.4:c.586G>T	p.Glu196Ter	p.E196*	ENST00000264414	NM_003590.4	196	Gaa/Taa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306627	41306627	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs202093079		P-0075082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			223	17	263	1	ENST00000373198.4:c.1032C>A	p.Asn344Lys	p.N344K	ENST00000373198	NM_133170.3	344	aaC/aaA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0075082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			184	50	190	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
HGF	3082	MSKCC	GRCh37	7	81355274	81355274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			142	17	255	0	ENST00000222390.5:c.1100C>A	p.Thr367Asn	p.T367N	ENST00000222390	NM_000601.4	367	aCc/aAc																																																																															
FANCC	2176	MSKCC	GRCh37	9	97869410	97869410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			255	18	247	0	ENST00000289081.3:c.1471C>T	p.Leu491Phe	p.L491F	ENST00000289081	NM_000136.2	491	Ctc/Ttc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246368	46246368	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			229	18	284	0	ENST00000334344.6:c.4462G>T	p.Asp1488Tyr	p.D1488Y	ENST00000334344	NM_152641.2	1488	Gac/Tac																																																																															
MGA	23269	MSKCC	GRCh37	15	42046719	42046719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			240	17	275	0	ENST00000219905.7:c.7093G>A	p.Ala2365Thr	p.A2365T	ENST00000219905	NM_001164273.1	2365	Gct/Act																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78897384	78897384	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			292	25	367	0	ENST00000306801.3:c.2719G>T	p.Gly907Cys	p.G907C	ENST00000306801	NM_020761.2	907	Ggc/Tgc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1623964	1623964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	57	203	0	ENST00000344749.5:c.535G>T	p.Gly179Cys	p.G179C	ENST00000344749	NM_001136139.2	179	Ggt/Tgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1294399	1294399	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			274	41	353	0	ENST00000310581.5:c.602G>T	p.Arg201Leu	p.R201L	ENST00000310581	NM_198253.2	201	cGg/cTg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873616	35873616	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			256	26	262	0	ENST00000303115.3:c.572T>A	p.Leu191Gln	p.L191Q	ENST00000303115	NM_002185.3	191	cTg/cAg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141570604	141570604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			220	50	270	0	ENST00000220592.5:c.524C>T	p.Thr175Ile	p.T175I	ENST00000220592	NM_012154.3	175	aCc/aTc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223787	53223787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			169	20	168	0	ENST00000375401.3:c.3572G>T	p.Gly1191Val	p.G1191V	ENST00000375401	NM_004187.3	1191	gGg/gTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411131	63411131	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777453882		P-0075082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			101	57	167	0	ENST00000330258.3:c.2036G>A	p.Arg679Gln	p.R679Q	ENST00000330258	NM_152424.3	679	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	10	541	1	ENST00000263967.3:c.3127A>C	p.Met1043Leu	p.M1043L	ENST00000263967	NM_006218.2	1043	Atg/Ctg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0075651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	103	280	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	96	385	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	107	405	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175770	112175773	+	frameshift_variant	Frame_Shift_Del	DEL	GGAA	GGAA	-			P-0075651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	230	377	0	ENST00000257430.4:c.4479_4482del	p.Glu1494ValfsTer12	p.E1494Vfs*12	ENST00000257430	NM_000038.5	1493	acGGAA/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	124	247	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	94	371	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368317	45368317	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1420438415		P-0075667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	72	288	0	ENST00000262160.6:c.1285C>T	p.Gln429Ter	p.Q429*	ENST00000262160	NM_005901.5	429	Cag/Tag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0075667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	116	531	0	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482843	67482843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	102	399	0	ENST00000327367.4:c.1247C>T	p.Ser416Phe	p.S416F	ENST00000327367	NM_005902.3	416	tCc/tTc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430215	181430215	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1205978762		P-0075667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	53	303	0	ENST00000325404.1:c.67G>A	p.Gly23Ser	p.G23S	ENST00000325404	NM_003106.3	23	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0075667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	34	277	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7590694	7590694	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0075667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	97	336	0	ENST00000269305.4:c.-29+1G>A		p.X10_splice	ENST00000269305	NM_001126112.2	10																																																																																
AR	367	MSKCC	GRCh37	X	66765577	66765577	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	133	535	0	ENST00000374690.3:c.589C>G	p.Gln197Glu	p.Q197E	ENST00000374690	NM_000044.3	197	Cag/Gag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18699365	18699368	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	AAGT	AAGT	-			P-0075667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	51	348	0	ENST00000266497.5:c.3467+2_3467+5del		p.X1156_splice	ENST00000266497		1156																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66467901	66467901	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	33	311	0	ENST00000273854.3:c.368C>A	p.Ala123Asp	p.A123D	ENST00000273854	NM_004439.5	123	gCt/gAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133245260	133245260	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	89	488	0	ENST00000320574.5:c.1987T>G	p.Cys663Gly	p.C663G	ENST00000320574	NM_006231.2	663	Tgc/Ggc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0075784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	216	469	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112174276	112174276	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	80	423	0	ENST00000257430.4:c.2985C>A	p.Cys995Ter	p.C995*	ENST00000257430	NM_000038.5	995	tgC/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112175531	112175532	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0075784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	163	399	0	ENST00000257430.4:c.4241dup	p.Ser1415LysfsTer8	p.S1415Kfs*8	ENST00000257430	NM_000038.5	1414	gta/gTta																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786109	3786109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	110	426	0	ENST00000262367.5:c.4656C>A	p.Ser1552Arg	p.S1552R	ENST00000262367	NM_004380.2	1552	agC/agA																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117733	70117762	+	inframe_deletion	In_Frame_Del	DEL	CAAGTTCCCCGTGTGCATCCGCGAGGCGGT	CAAGTTCCCCGTGTGCATCCGCGAGGCGGT	-			P-0075784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	82	452	0	ENST00000245479.2:c.203_232del	p.Lys68_Val77del	p.K68_V77del	ENST00000245479	NM_000346.3	67	gaCAAGTTCCCCGTGTGCATCCGCGAGGCGGTc/gac																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119726	70119736	+	frameshift_variant	Frame_Shift_Del	DEL	CCGACGTGCAG	CCGACGTGCAG	-			P-0075784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	93	247	0	ENST00000245479.2:c.731_741del	p.Asp244GlyfsTer4	p.D244Gfs*4	ENST00000245479	NM_000346.3	243	aCCGACGTGCAG/a																																																																															
KDR	3791	MSKCC	GRCh37	4	55968666	55968666	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	82	342	1	ENST00000263923.4:c.1997C>A	p.Ala666Glu	p.A666E	ENST00000263923	NM_002253.2	666	gCa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112175106	112175106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	164	389	0	ENST00000257430.4:c.3815C>T	p.Ser1272Leu	p.S1272L	ENST00000257430	NM_000038.5	1272	tCa/tTa																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2039765	2039788	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAACAGCAGCAGCAG	CAGCAGCAGCAACAGCAGCAGCAG	-			P-0075784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	85	491	0	ENST00000349721.2:c.666_689del	p.Gln231_Gln238del	p.Q231_Q238del	ENST00000349721	NM_003070.3	219	CAGCAGCAGCAACAGCAGCAGCAG/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934874		P-0066040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	50	509	0	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0066040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	39	290	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631838	90631838	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075313-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	107	630	0	ENST00000330062.3:c.515G>C	p.Arg172Thr	p.R172T	ENST00000330062	NM_002168.2	172	aGg/aCg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62322259	62322259	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A			P-0075313-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	24	433	0	ENST00000482936.1:c.2515G>A	p.Glu839Lys	p.E839K	ENST00000482936		839	Gag/Aag																																																																															
MET	4233	MSKCC	GRCh37	7	116423407	116423407	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913671		P-0075363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			709	207	240	0	ENST00000397752.3:c.3682G>A	p.Asp1228Asn	p.D1228N	ENST00000397752	NM_000245.2	1228	Gac/Aac																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740447	145740447	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376587038		P-0075363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			810	103	309	0	ENST00000428558.2:c.1493C>T	p.Thr498Met	p.T498M	ENST00000428558	NM_004260.3	498	aCg/aTg																																																																															
LYN	4067	MSKCC	GRCh37	8	56866415	56866415	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			741	88	281	0	ENST00000519728.1:c.662G>T	p.Arg221Ile	p.R221I	ENST00000519728	NM_002350.3	221	aGa/aTa																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818189	32818189	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777683307		P-0075363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			468	99	251	0	ENST00000354258.4:c.1336G>A	p.Glu446Lys	p.E446K	ENST00000354258	NM_000593.5	446	Gaa/Aaa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38178602	38178602	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	77	226	0	ENST00000317025.8:c.1797C>G	p.Ile599Met	p.I599M	ENST00000317025	NM_023034.1	599	atC/atG																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900392	3900392	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778400698		P-0075363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			569	116	291	0	ENST00000262367.5:c.704C>T	p.Ser235Leu	p.S235L	ENST00000262367	NM_004380.2	235	tCg/tTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187793	11187793	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			580	94	232	0	ENST00000361445.4:c.6104C>G	p.Ser2035Cys	p.S2035C	ENST00000361445	NM_004958.3	2035	tCt/tGt																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246093216	246093216	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			874	562	233	0	ENST00000388985.4:c.555C>G	p.Ile185Met	p.I185M	ENST00000388985		185	atC/atG																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020728	37020728	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			512	98	246	0	ENST00000358127.4:c.117G>C	p.Gln39His	p.Q39H	ENST00000358127	NM_001280556.1	39	caG/caC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242487	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATCTC	AATTAAGAGAAGCAACATCTC	TAT			P-0075363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			501	78	258	1	ENST00000275493.2:c.2237_2257delinsTAT	p.Glu746_Pro753delinsValSer	p.E746_P753delinsVS	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCTCcg/gTATcg																																																																															
TET1	80312	MSKCC	GRCh37	10	70406379	70406379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	91	452	0	ENST00000373644.4:c.3893C>T	p.Pro1298Leu	p.P1298L	ENST00000373644	NM_030625.2	1298	cCt/cTt																																																																															
PGR	5241	MSKCC	GRCh37	11	100998753	100998753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	99	417	0	ENST00000325455.5:c.1049C>T	p.Ser350Phe	p.S350F	ENST00000325455	NM_001202474.3	350	tCc/tTc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102206804	102206804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	68	386	0	ENST00000263464.3:c.1432G>A	p.Glu478Lys	p.E478K	ENST00000263464	NM_001165.4	478	Gaa/Aaa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114223	115114223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	93	435	0	ENST00000257566.3:c.994G>A	p.Glu332Lys	p.E332K	ENST00000257566	NM_016569.3	332	Gag/Aag																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434139	121434139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767616383		P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	114	549	1	ENST00000257555.6:c.1030G>A	p.Val344Met	p.V344M	ENST00000257555		344	Gtg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436420	49436420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	115	488	1	ENST00000301067.7:c.5791C>T	p.Pro1931Ser	p.P1931S	ENST00000301067	NM_003482.3	1931	Cct/Tct																																																																															
BRCA2	675	MSKCC	GRCh37	13	32915232	32915232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	58	437	1	ENST00000380152.3:c.6740G>A	p.Ser2247Asn	p.S2247N	ENST00000380152		2247	aGt/aAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031825	10031825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	102	448	0	ENST00000330684.3:c.998C>T	p.Thr333Ile	p.T333I	ENST00000330684	NM_001134407.1	333	aCc/aTc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843573	3843573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	83	457	0	ENST00000262367.5:c.1030C>T	p.Pro344Ser	p.P344S	ENST00000262367	NM_004380.2	344	Ccc/Tcc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17122463	17122463	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	114	461	0	ENST00000285071.4:c.932C>T	p.Pro311Leu	p.P311L	ENST00000285071	NM_144997.5	311	cCt/cTt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37863252	37863252	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1284110310		P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	121	500	0	ENST00000269571.5:c.83G>A	p.Gly28Asp	p.G28D	ENST00000269571		28	gGc/gAc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244783	41244783	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80357460		P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	98	462	0	ENST00000357654.3:c.2765C>T	p.Thr922Ile	p.T922I	ENST00000357654	NM_007294.3	922	aCa/aTa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15280950	15280950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	106	535	0	ENST00000263388.2:c.5146G>A	p.Glu1716Lys	p.E1716K	ENST00000263388	NM_000435.2	1716	Gag/Aag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291507	15291507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	124	499	0	ENST00000263388.2:c.3127G>A	p.Ala1043Thr	p.A1043T	ENST00000263388	NM_000435.2	1043	Gcc/Acc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99204054	99204054	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs76257041		P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	52	333	0	ENST00000074304.5:c.2917G>A	p.Gly973Arg	p.G973R	ENST00000074304	NM_001134224.1	973	Gga/Aga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017713	31017713	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778674124		P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	84	313	0	ENST00000375687.4:c.575G>A	p.Gly192Asp	p.G192D	ENST00000375687	NM_015338.5	192	gGc/gAc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31389143	31389143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	124	446	0	ENST00000328111.2:c.2056G>A	p.Glu686Lys	p.E686K	ENST00000328111	NM_006892.3	686	Gag/Aag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790000	40790000	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs724159843		P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	129	415	1	ENST00000373198.4:c.2731G>A	p.Glu911Lys	p.E911K	ENST00000373198	NM_133170.3	911	Gaa/Aaa																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24134057	24134057	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	27	468	0	ENST00000263121.7:c.214del	p.Thr72GlnfsTer13	p.T72Qfs*13	ENST00000263121	NM_003073.3	70	Aaa/aa																																																																															
EP300	2033	MSKCC	GRCh37	22	41556645	41556645	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	104	444	0	ENST00000263253.7:c.3591-1G>A		p.X1197_splice	ENST00000263253	NM_001429.3	1197																																																																																
MLH1	4292	MSKCC	GRCh37	3	37083823	37083823	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs267607853		P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	133	306	0	ENST00000231790.2:c.1731+1G>A		p.X577_splice	ENST00000231790	NM_000249.3	577																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89468354	89468354	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	56	318	0	ENST00000336596.2:c.1889-1G>A		p.X630_splice	ENST00000336596	NM_005233.5	630																																																																																
FAT1	2195	MSKCC	GRCh37	4	187541507	187541507	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758885671		P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	48	428	0	ENST00000441802.2:c.6233C>T	p.Ala2078Val	p.A2078V	ENST00000441802	NM_005245.3	2078	gCg/gTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295270	1295270	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs796093488		P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	124	462	0				ENST00000310581	NM_198253.2																																																																																	
RASA1	5921	MSKCC	GRCh37	5	86668013	86668013	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	29	377	0	ENST00000274376.6:c.1776+1G>A		p.X592_splice	ENST00000274376	NM_002890.2	592																																																																																
EPHA7	2045	MSKCC	GRCh37	6	94120336	94120336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	110	500	0	ENST00000369303.4:c.715G>A	p.Glu239Lys	p.E239K	ENST00000369303	NM_004440.3	239	Gag/Aag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978452	2978452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	64	344	0	ENST00000396946.4:c.878G>A	p.Ser293Asn	p.S293N	ENST00000396946	NM_032415.4	293	aGc/aAc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882049	36882050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs780753361		P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	61	460	0	ENST00000358127.4:c.963dup	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	-/C																																																																															
JAK2	3717	MSKCC	GRCh37	9	5089794	5089794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	65	363	0	ENST00000381652.3:c.2692G>A	p.Glu898Lys	p.E898K	ENST00000381652	NM_004972.3	898	Gaa/Aaa																																																																															
BTK	695	MSKCC	GRCh37	X	100608256	100608256	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	102	225	0	ENST00000308731.7:c.1834C>T	p.Gln612Ter	p.Q612*	ENST00000308731	NM_000061.2	612	Caa/Taa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934289	39934289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	106	228	0	ENST00000378444.4:c.310G>A	p.Ala104Thr	p.A104T	ENST00000378444	NM_001123385.1	104	Gct/Act																																																																															
MED12	9968	MSKCC	GRCh37	X	70347191	70347191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	117	218	0	ENST00000374080.3:c.2855G>A	p.Cys952Tyr	p.C952Y	ENST00000374080		952	tGt/tAt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843580	156843580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	96	539	0	ENST00000524377.1:c.1006G>A	p.Ala336Thr	p.A336T	ENST00000524377	NM_002529.3	336	Gca/Aca																																																																															
CDC73	79577	MSKCC	GRCh37	1	193117018	193117018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	83	288	0	ENST00000367435.3:c.751G>A	p.Ala251Thr	p.A251T	ENST00000367435	NM_024529.4	251	Gca/Aca																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206651175	206651175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	103	544	0	ENST00000367120.3:c.785C>T	p.Thr262Ile	p.T262I	ENST00000367120	NM_014002.3	262	aCc/aTc																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230561565	230561565	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	106	459	1				ENST00000391860	NM_001258311.1																																																																																	
JAK1	3716	MSKCC	GRCh37	1	65312349	65312349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	112	473	1	ENST00000342505.4:c.1970G>A	p.Cys657Tyr	p.C657Y	ENST00000342505	NM_002227.2	657	tGt/tAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624299	89624312	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGACCTGTATCCA	TTGACCTGTATCCA	-			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	126	289	0	ENST00000371953.3:c.75_79+9del		p.X25_splice	ENST00000371953	NM_000314.4	25																																																																																
MEN1	4221	MSKCC	GRCh37	11	64573747	64573747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	115	531	0	ENST00000337652.1:c.1021G>A	p.Glu341Lys	p.E341K	ENST00000337652	NM_130803.2	341	Gaa/Aaa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575104	64575104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	250	557	0	ENST00000337652.1:c.718G>A	p.Glu240Lys	p.E240K	ENST00000337652	NM_130803.2	240	Gag/Aag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948496	71948496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	134	580	0	ENST00000298229.2:c.3208G>A	p.Asp1070Asn	p.D1070N	ENST00000298229	NM_001567.3	1070	Gat/Aat																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885256	111885256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	116	539	0	ENST00000341259.2:c.1144G>A	p.Gly382Ser	p.G382S	ENST00000341259	NM_005475.2	382	Ggc/Agc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436088	49436088	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1308921879		P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	90	439	0	ENST00000301067.7:c.5893G>A	p.Glu1965Lys	p.E1965K	ENST00000301067	NM_003482.3	1965	Gaa/Aaa																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50479311	50479311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	98	354	0	ENST00000394963.4:c.159G>A	p.Met53Ile	p.M53I	ENST00000394963	NM_003076.4	53	atG/atA																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864394	57864394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	114	551	0	ENST00000228682.2:c.1871C>T	p.Ala624Val	p.A624V	ENST00000228682	NM_005269.2	624	gCc/gTc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436813	110436813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	138	474	1	ENST00000375856.3:c.1588G>A	p.Ala530Thr	p.A530T	ENST00000375856	NM_003749.2	530	Gcc/Acc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26978160	26978160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	90	344	0	ENST00000381527.3:c.1337G>A	p.Gly446Glu	p.G446E	ENST00000381527	NM_001260.1	446	gGa/gAa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589804	28589804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	42	392	1	ENST00000241453.7:c.2576G>A	p.Ser859Asn	p.S859N	ENST00000241453	NM_004119.2	859	aGc/aAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32945171	32945171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	71	357	0	ENST00000380152.3:c.8566G>A	p.Glu2856Lys	p.E2856K	ENST00000380152		2856	Gag/Aag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135408	30135408	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144928679		P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	65	349	0	ENST00000331968.5:c.410C>T	p.Ala137Val	p.A137V	ENST00000331968	NM_002742.2	137	gCc/gTc																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872991	35872991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	95	371	0	ENST00000216797.5:c.241G>A	p.Ala81Thr	p.A81T	ENST00000216797	NM_020529.2	81	Gcc/Acc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562957	95562957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	116	452	0	ENST00000343455.3:c.4300G>A	p.Glu1434Lys	p.E1434K	ENST00000343455	NM_177438.2	1434	Gaa/Aaa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95590961	95590961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	61	394	0	ENST00000343455.3:c.948G>A	p.Trp316Ter	p.W316*	ENST00000343455	NM_177438.2	316	tgG/tgA																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643257	38643257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	72	406	0	ENST00000299084.4:c.727G>A	p.Asp243Asn	p.D243N	ENST00000299084	NM_152594.2	243	Gat/Aat																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40681750	40681750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	49	325	0	ENST00000249776.8:c.529G>A	p.Asp177Asn	p.D177N	ENST00000249776	NM_033286.3	177	Gac/Aac																																																																															
MGA	23269	MSKCC	GRCh37	15	42059332	42059332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	120	523	0	ENST00000219905.7:c.9052G>A	p.Ala3018Thr	p.A3018T	ENST00000219905	NM_001164273.1	3018	Gct/Act																																																																															
USP8	9101	MSKCC	GRCh37	15	50763884	50763884	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	88	391	0	ENST00000307179.4:c.741G>A	p.Trp247Ter	p.W247*	ENST00000307179		247	tgG/tgA																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222230	2222230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	95	540	0	ENST00000326181.6:c.514G>A	p.Val172Met	p.V172M	ENST00000326181	NM_032271.2	172	Gtg/Atg																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30134360	30134360	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	69	311	0	ENST00000263025.4:c.170+1G>A		p.X57_splice	ENST00000263025	NM_002746.2	57																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72831621	72831621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	104	505	0	ENST00000268489.5:c.4960C>T	p.Pro1654Ser	p.P1654S	ENST00000268489	NM_006885.3	1654	Cct/Tct																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993431	72993431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	92	505	0	ENST00000268489.5:c.614G>A	p.Gly205Glu	p.G205E	ENST00000268489	NM_006885.3	205	gGg/gAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349030	89349030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	101	520	0	ENST00000301030.4:c.3920G>A	p.Ser1307Asn	p.S1307N	ENST00000301030	NM_001256183.1	1307	aGc/aAc																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679827	33679827	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs541299834		P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	75	524	0	ENST00000308377.4:c.2254C>T	p.Pro752Ser	p.P752S	ENST00000308377	NM_152270.3	752	Cct/Tct																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650777	37650777	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	70	373	0	ENST00000447079.4:c.2249G>A	p.Gly750Glu	p.G750E	ENST00000447079	NM_015083.1	750	gGa/gAa																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870592	40870592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	88	472	0	ENST00000428826.2:c.811C>T	p.Pro271Ser	p.P271S	ENST00000428826		271	Cct/Tct																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245713	41245713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	84	421	0	ENST00000357654.3:c.1835G>A	p.Arg612Lys	p.R612K	ENST00000357654	NM_007294.3	612	aGg/aAg																																																																															
MSI2	124540	MSKCC	GRCh37	17	55729495	55729495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	104	389	0	ENST00000284073.2:c.763G>A	p.Ala255Thr	p.A255T	ENST00000284073	NM_138962.2	255	Gcg/Acg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435261	56435261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	113	602	0	ENST00000407977.2:c.1876C>T	p.Pro626Ser	p.P626S	ENST00000407977		626	Cca/Tca																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63537650	63537650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	79	386	0	ENST00000307078.5:c.982G>A	p.Gly328Ser	p.G328S	ENST00000307078	NM_004655.3	328	Ggc/Agc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10260215	10260215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	104	492	0	ENST00000340748.4:c.2452G>A	p.Asp818Asn	p.D818N	ENST00000340748		818	Gat/Aat																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10266622	10266622	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	93	397	0	ENST00000340748.4:c.1352-1G>A		p.X451_splice	ENST00000340748		451																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10600506	10600506	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	137	522	0	ENST00000171111.5:c.1349G>A	p.Trp450Ter	p.W450*	ENST00000171111	NM_203500.1	450	tGg/tAg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610195	10610195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	94	503	0	ENST00000171111.5:c.515G>A	p.Ser172Asn	p.S172N	ENST00000171111	NM_203500.1	172	aGt/aAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141516	11141516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	98	506	0	ENST00000344626.4:c.3493C>T	p.Leu1165Phe	p.L1165F	ENST00000344626	NM_003072.3	1165	Ctc/Ttc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276242	15276242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	84	445	0	ENST00000263388.2:c.5752G>A	p.Val1918Ile	p.V1918I	ENST00000263388	NM_000435.2	1918	Gta/Ata																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612379	1612379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	87	448	0	ENST00000344749.5:c.1640G>A	p.Arg547Lys	p.R547K	ENST00000344749	NM_001136139.2	547	aGg/aAg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622087	1622087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	89	507	0	ENST00000344749.5:c.788G>A	p.Ser263Asn	p.S263N	ENST00000344749	NM_001136139.2	263	aGc/aAc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622106	1622106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	93	533	0	ENST00000344749.5:c.769G>A	p.Gly257Ser	p.G257S	ENST00000344749	NM_001136139.2	257	Ggc/Agc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943518	17943518	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	122	498	0	ENST00000458235.1:c.2491-1G>A		p.X831_splice	ENST00000458235	NM_000215.3	831																																																																																
UPF1	5976	MSKCC	GRCh37	19	18960946	18960946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	86	444	1	ENST00000262803.5:c.524C>T	p.Pro175Leu	p.P175L	ENST00000262803	NM_002911.3	175	cCc/cTc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256827	19256827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	99	425	0	ENST00000162023.5:c.886G>A	p.Gly296Ser	p.G296S	ENST00000162023		296	Ggc/Agc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30303655	30303655	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145289511		P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	133	444	0	ENST00000262643.3:c.83C>T	p.Ser28Phe	p.S28F	ENST00000262643	NM_001238.2	28	tCc/tTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223115	36223115	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	132	568	0	ENST00000222270.7:c.5666-1G>A		p.X1889_splice	ENST00000222270	NM_014727.1	1889																																																																																
AXL	558	MSKCC	GRCh37	19	41736926	41736926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			727	141	649	0	ENST00000301178.4:c.641C>T	p.Thr214Ile	p.T214I	ENST00000301178	NM_021913.4	214	aCc/aTc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753027	42753028	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	51	497	0	ENST00000222329.4:c.1236_1237del	p.Ala413ArgfsTer29	p.A413Rfs*29	ENST00000222329	NM_006494.2	412	ggGGca/ggca																																																																															
CIC	23152	MSKCC	GRCh37	19	42795202	42795202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	102	521	0	ENST00000575354.2:c.2282C>T	p.Thr761Ile	p.T761I	ENST00000575354	NM_015125.3	761	aCt/aTt																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45856062	45856062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	104	424	0	ENST00000391945.4:c.1844G>A	p.Gly615Glu	p.G615E	ENST00000391945	NM_000400.3	615	gGg/gAg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503905	47503905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	77	476	0	ENST00000404338.3:c.4460C>T	p.Pro1487Leu	p.P1487L	ENST00000404338	NM_004491.4	1487	cCa/cTa																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128015198	128015198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	79	360	0	ENST00000285398.2:c.2323C>T	p.Pro775Ser	p.P775S	ENST00000285398	NM_000122.1	775	Ccg/Tcg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376167	225376167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	42	370	0	ENST00000264414.4:c.787G>A	p.Val263Met	p.V263M	ENST00000264414	NM_003590.4	263	Gtg/Atg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46583903	46583903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	86	369	0	ENST00000263734.3:c.410C>T	p.Pro137Leu	p.P137L	ENST00000263734	NM_001430.4	137	cCc/cTc																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47596648	47596648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	85	263	0	ENST00000263735.4:c.4G>A	p.Ala2Thr	p.A2T	ENST00000263735	NM_002354.2	2	Gcg/Acg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637477	47637477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	94	416	1	ENST00000233146.2:c.611G>A	p.Gly204Glu	p.G204E	ENST00000233146	NM_000251.2	204	gGa/gAa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	30956871	30956871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	95	418	0	ENST00000375687.4:c.197G>A	p.Gly66Glu	p.G66E	ENST00000375687	NM_015338.5	66	gGa/gAa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31389168	31389168	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	109	450	0	ENST00000328111.2:c.2081G>A	p.Trp694Ter	p.W694*	ENST00000328111	NM_006892.3	694	tGg/tAg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39751848	39751848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	84	389	0	ENST00000361337.2:c.2209G>A	p.Gly737Ser	p.G737S	ENST00000361337	NM_003286.2	737	Ggt/Agt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523368	9523368	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs6118639		P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	92	369	0	ENST00000353224.5:c.1870-1G>A		p.X624_splice	ENST00000353224	NM_177990.2	624																																																																																
U2AF1	7307	MSKCC	GRCh37	21	44514845	44514845	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	133	455	0	ENST00000291552.4:c.402G>A	p.Trp134Ter	p.W134*	ENST00000291552	NM_006758.2	134	tgG/tgA																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21348232	21348232	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1303528589		P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	53	488	0	ENST00000215739.8:c.1373G>A	p.Gly458Asp	p.G458D	ENST00000215739	NM_006767.3	458	gGc/gAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41513433	41513433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	107	540	0	ENST00000263253.7:c.337C>T	p.Pro113Ser	p.P113S	ENST00000263253	NM_001429.3	113	Cct/Tct																																																																															
VHL	7428	MSKCC	GRCh37	3	10188282	10188282	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	78	430	0	ENST00000256474.2:c.425T>C	p.Val142Ala	p.V142A	ENST00000256474	NM_000551.3	142	gTt/gCt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165060	47165060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	72	393	0	ENST00000409792.3:c.1066G>A	p.Ala356Thr	p.A356T	ENST00000409792	NM_014159.6	356	Gca/Aca																																																																															
MST1	4485	MSKCC	GRCh37	3	49723071	49723071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			69	16	97	0	ENST00000449682.2:c.1345G>A	p.Asp449Asn	p.D449N	ENST00000449682	NM_020998.3	449	Gac/Aac																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439133	52439133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	96	491	0	ENST00000460680.1:c.1109C>T	p.Pro370Leu	p.P370L	ENST00000460680	NM_004656.3	370	cCc/cTc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63967975	63967975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	131	457	0	ENST00000295900.6:c.866G>A	p.Gly289Asp	p.G289D	ENST00000295900	NM_000333.3	289	gGc/gAc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63976504	63976504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	116	393	0	ENST00000295900.6:c.1651G>A	p.Val551Met	p.V551M	ENST00000295900	NM_000333.3	551	Gtg/Atg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027138	71027138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	122	485	0	ENST00000318789.4:c.1189G>A	p.Glu397Lys	p.E397K	ENST00000318789	NM_032682.5	397	Gag/Aag																																																																															
TET2	54790	MSKCC	GRCh37	4	106164799	106164799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	91	379	0	ENST00000380013.4:c.3667G>A	p.Ala1223Thr	p.A1223T	ENST00000380013	NM_001127208.2	1223	Gct/Act																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539099	187539099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	99	520	0	ENST00000441802.2:c.8641G>A	p.Asp2881Asn	p.D2881N	ENST00000441802	NM_005245.3	2881	Gac/Aac																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1919907	1919907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	87	394	0	ENST00000382895.3:c.967G>A	p.Glu323Lys	p.E323K	ENST00000382895	NM_133330.2	323	Gaa/Aaa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1977021	1977021	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	89	409	0	ENST00000382895.3:c.3515G>A	p.Gly1172Glu	p.G1172E	ENST00000382895	NM_133330.2	1172	gGg/gAg																																																																															
TERT	7015	MSKCC	GRCh37	5	1264615	1264615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	89	520	0	ENST00000310581.5:c.2747G>A	p.Gly916Asp	p.G916D	ENST00000310581	NM_198253.2	916	gGc/gAc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131894975	131894975	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	48	186	0	ENST00000265335.6:c.130-1G>A		p.X44_splice	ENST00000265335		44																																																																																
PDGFRB	5159	MSKCC	GRCh37	5	149495504	149495504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	107	490	0	ENST00000261799.4:c.3143C>T	p.Thr1048Ile	p.T1048I	ENST00000261799	NM_002609.3	1048	aCc/aTc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500885	149500885	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	85	388	0	ENST00000261799.4:c.2345C>T	p.Ala782Val	p.A782V	ENST00000261799	NM_002609.3	782	gCc/gTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180036969	180036969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	121	548	0	ENST00000261937.6:c.3743G>A	p.Gly1248Asp	p.G1248D	ENST00000261937	NM_182925.4	1248	gGt/gAt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31406966	31406966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	82	318	0	ENST00000344624.3:c.3941G>A	p.Gly1314Glu	p.G1314E	ENST00000344624		1314	gGa/gAa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31410952	31410952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	139	462	0	ENST00000344624.3:c.3568G>A	p.Val1190Ile	p.V1190I	ENST00000344624		1190	Gta/Ata																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945811	38945811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	39	340	0	ENST00000357387.3:c.4415C>T	p.Thr1472Ile	p.T1472I	ENST00000357387	NM_152756.3	1472	aCt/aTt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750448	57750448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	86	449	1	ENST00000274289.3:c.2020G>A	p.Glu674Lys	p.E674K	ENST00000274289	NM_006622.3	674	Gaa/Aaa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754559	57754559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	79	349	0	ENST00000274289.3:c.488G>A	p.Ser163Asn	p.S163N	ENST00000274289	NM_006622.3	163	aGt/aAt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755551	57755551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	126	451	0	ENST00000274289.3:c.236G>A	p.Gly79Glu	p.G79E	ENST00000274289	NM_006622.3	79	gGg/gAg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522516	67522516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	67	374	0	ENST00000274335.5:c.13G>A	p.Gly5Arg	p.G5R	ENST00000274335		5	Ggg/Agg																																																																															
MSH3	4437	MSKCC	GRCh37	5	80063812	80063812	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	34	383	1	ENST00000265081.6:c.1957C>T	p.Gln653Ter	p.Q653*	ENST00000265081	NM_002439.4	653	Caa/Taa																																																																															
TRIP13	9319	MSKCC	GRCh37	5	895009	895009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	78	333	1	ENST00000166345.3:c.200C>T	p.Thr67Ile	p.T67I	ENST00000166345	NM_004237.3	67	aCc/aTc																																																																															
TRIP13	9319	MSKCC	GRCh37	5	908546	908546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	120	354	0	ENST00000166345.3:c.836C>T	p.Ala279Val	p.A279V	ENST00000166345	NM_004237.3	279	gCt/gTt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157517380	157517380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	67	355	0	ENST00000346085.5:c.3944C>T	p.Ser1315Phe	p.S1315F	ENST00000346085	NM_020732.3	1315	tCc/tTc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528483	157528483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	93	475	0	ENST00000346085.5:c.6208G>A	p.Val2070Met	p.V2070M	ENST00000346085	NM_020732.3	2070	Gtg/Atg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681121	30681121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	69	407	0	ENST00000376406.3:c.598G>A	p.Gly200Arg	p.G200R	ENST00000376406	NM_014641.2	200	Ggg/Agg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287976	33287976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	115	507	0	ENST00000374542.5:c.1277G>A	p.Gly426Glu	p.G426E	ENST00000374542	NM_001141970.1	426	gGg/gAg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288591	33288591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	103	433	0	ENST00000374542.5:c.961G>A	p.Gly321Ser	p.G321S	ENST00000374542	NM_001141970.1	321	Ggc/Agc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288958	33288958	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	251	471	0	ENST00000374542.5:c.594T>A	p.Tyr198Ter	p.Y198*	ENST00000374542	NM_001141970.1	198	taT/taA																																																																															
BRAF	673	MSKCC	GRCh37	7	140434560	140434560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	61	274	0	ENST00000288602.6:c.2138C>T	p.Ser713Phe	p.S713F	ENST00000288602	NM_004333.4	713	tCt/tTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874479	151874479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	35	460	0	ENST00000262189.6:c.8059G>A	p.Glu2687Lys	p.E2687K	ENST00000262189	NM_170606.2	2687	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55220293	55220293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	63	324	0	ENST00000275493.2:c.683C>T	p.Pro228Leu	p.P228L	ENST00000275493	NM_005228.3	228	cCc/cTc																																																																															
NBN	4683	MSKCC	GRCh37	8	90947814	90947814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	26	222	0	ENST00000265433.3:c.2261G>A	p.Arg754Lys	p.R754K	ENST00000265433	NM_002485.4	754	aGa/aAa																																																																															
ABL1	25	MSKCC	GRCh37	9	133755526	133755526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	100	349	0	ENST00000318560.5:c.1495G>A	p.Glu499Lys	p.E499K	ENST00000318560	NM_005157.4	499	Gaa/Aaa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405723	139405723	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	86	389	0	ENST00000277541.6:c.2468G>A	p.Gly823Asp	p.G823D	ENST00000277541	NM_017617.3	823	gGt/gAt																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793280	139793280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	89	358	0	ENST00000247668.2:c.88G>A	p.Ala30Thr	p.A30T	ENST00000247668	NM_021138.3	30	Gcc/Acc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814935	139814935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	95	419	0	ENST00000247668.2:c.928G>A	p.Asp310Asn	p.D310N	ENST00000247668	NM_021138.3	310	Gac/Aac																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2029075	2029075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			797	45	538	0	ENST00000349721.2:c.53G>A	p.Gly18Glu	p.G18E	ENST00000349721	NM_003070.3	18	gGg/gAg																																																																															
TEK	7010	MSKCC	GRCh37	9	27158022	27158022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	129	532	0	ENST00000380036.4:c.246G>A	p.Trp82Ter	p.W82*	ENST00000380036	NM_000459.3	82	tgG/tgA																																																																															
TEK	7010	MSKCC	GRCh37	9	27192540	27192540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	92	407	0	ENST00000380036.4:c.1543C>T	p.Leu515Phe	p.L515F	ENST00000380036	NM_000459.3	515	Ctc/Ttc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340425	8340425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	99	476	0	ENST00000356435.5:c.5171C>T	p.Thr1724Ile	p.T1724I	ENST00000356435		1724	aCc/aTc																																																																															
XIAP	331	MSKCC	GRCh37	X	123019526	123019526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	50	156	0	ENST00000355640.3:c.14G>A	p.Ser5Asn	p.S5N	ENST00000355640		5	aGt/aAt																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321367	1321367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	119	373	0	ENST00000381566.1:c.388C>T	p.His130Tyr	p.H130Y	ENST00000381566		130	Cat/Tat																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858010	152858010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	83	234	0	ENST00000406277.2:c.605G>A	p.Gly202Glu	p.G202E	ENST00000406277	NM_152274.4	202	gGa/gAa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44733234	44733234	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	71	161	0	ENST00000377967.4:c.225+1G>A		p.X75_splice	ENST00000377967	NM_021140.2	75																																																																																
RBM10	8241	MSKCC	GRCh37	X	47040662	47040662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	98	211	1	ENST00000329236.7:c.1063G>A	p.Val355Ile	p.V355I	ENST00000329236	NM_001204466.1	355	Gtc/Atc																																																																															
MED12	9968	MSKCC	GRCh37	X	70342675	70342675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	87	220	0	ENST00000374080.3:c.1436C>T	p.Ser479Phe	p.S479F	ENST00000374080		479	tCc/tTc																																																																															
MED12	9968	MSKCC	GRCh37	X	70352333	70352333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	116	261	0	ENST00000374080.3:c.4360G>A	p.Gly1454Ser	p.G1454S	ENST00000374080		1454	Ggt/Agt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075517-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	120	318	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591931	48591931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075517-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	100	476	0	ENST00000342988.3:c.1094G>A	p.Gly365Asp	p.G365D	ENST00000342988	NM_005359.5	365	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0075517-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	112	331	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629589	187629589	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075517-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	166	437	2	ENST00000441802.2:c.1393C>T	p.Gln465Ter	p.Q465*	ENST00000441802	NM_005245.3	465	Cag/Tag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662281	227662281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075517-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	48	463	0	ENST00000305123.5:c.1174C>A	p.Leu392Met	p.L392M	ENST00000305123	NM_005544.2	392	Ctg/Atg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265198	46265198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075517-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	88	509	0	ENST00000371998.3:c.2068C>T	p.Gln690Ter	p.Q690*	ENST00000371998		690	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0075520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	395	433	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644869	67644869	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753730952		P-0075520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	385	513	1	ENST00000264010.4:c.134C>T	p.Thr45Met	p.T45M	ENST00000264010	NM_006565.3	45	aCg/aTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576178	88576178	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368708129		P-0075520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	128	410	0	ENST00000360948.2:c.1495G>A	p.Asp499Asn	p.D499N	ENST00000360948	NM_001012338.2	499	Gac/Aac																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72058517	72058517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372023233		P-0075520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	106	376	0	ENST00000357731.5:c.923C>T	p.Ala308Val	p.A308V	ENST00000357731	NM_173808.2	308	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175188	112175189	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	272	362	0	ENST00000257430.4:c.3899dup	p.Asn1300LysfsTer15	p.N1300Kfs*15	ENST00000257430	NM_000038.5	1299	-/A																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941181	71941181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	179	595	0	ENST00000298229.2:c.956C>T	p.Thr319Ile	p.T319I	ENST00000298229	NM_001567.3	319	aCc/aTc																																																																															
ATM	472	MSKCC	GRCh37	11	108126970	108126970	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075526-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	75	334	0	ENST00000278616.4:c.2153G>C	p.Cys718Ser	p.C718S	ENST00000278616	NM_000051.3	718	tGt/tCt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275202	41275203	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075526-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	113	516	0	ENST00000349496.5:c.1369dup	p.Arg457LysfsTer6	p.R457Kfs*6	ENST00000349496	NM_001904.3	456	-/A																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0075527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	12	375	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	14	476	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0075529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	51	413	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922718	44922718	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	12	201	0	ENST00000377967.4:c.1580del	p.Pro527GlnfsTer21	p.P527Qfs*21	ENST00000377967	NM_021140.2	527	Cca/ca																																																																															
USP8	9101	MSKCC	GRCh37	15	50788196	50788197	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0075529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	18	301	0	ENST00000307179.4:c.2811dup	p.Thr938HisfsTer7	p.T938Hfs*7	ENST00000307179		937	ctc/ctCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-	rs397517086		P-0075533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	76	435	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857436	9857436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	34	486	0	ENST00000330684.3:c.3965G>A	p.Gly1322Glu	p.G1322E	ENST00000330684	NM_001134407.1	1322	gGa/gAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444783	49444783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	42	585	0	ENST00000301067.7:c.2683C>T	p.Leu895Phe	p.L895F	ENST00000301067	NM_003482.3	895	Ctt/Ttt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31422906	31422907	+	inframe_insertion	In_Frame_Ins	INS	-	-	TAAATC			P-0075533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	44	341	0	ENST00000344624.3:c.3401_3406dup	p.Phe1135_Asn1136insArgPhe	p.F1135_N1136insRF	ENST00000344624		1136	aac/aGATTTAac																																																																															
ATM	472	MSKCC	GRCh37	11	108158330	108158330	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	34	317	0	ENST00000278616.4:c.3997G>C	p.Asp1333His	p.D1333H	ENST00000278616	NM_000051.3	1333	Gat/Cat																																																																															
ATM	472	MSKCC	GRCh37	11	108199898	108199899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	55	382	0	ENST00000278616.4:c.7242dup	p.Ala2415SerfsTer14	p.A2415Sfs*14	ENST00000278616	NM_000051.3	2414	caa/cAaa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911574	32911574	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0075533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	26	320	0	ENST00000380152.3:c.3085del	p.Met1029CysfsTer14	p.M1029Cfs*14	ENST00000380152		1028	Aaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574026	7574026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065036-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			321	219	402	0	ENST00000269305.4:c.1001G>T	p.Gly334Val	p.G334V	ENST00000269305	NM_001126112.2	334	gGg/gTg																																																																															
BLM	641	MSKCC	GRCh37	15	91347475	91347475	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065036-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			418	159	517	0	ENST00000355112.3:c.3637G>C	p.Glu1213Gln	p.E1213Q	ENST00000355112	NM_000057.2	1213	Gag/Cag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37667883	37667883	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0074141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	40	315	0	ENST00000447079.4:c.2768G>C	p.Gly923Ala	p.G923A	ENST00000447079	NM_015083.1	923	gGa/gCa																																																																															
ATR	545	MSKCC	GRCh37	3	142188211	142188211	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0074141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	40	341	0	ENST00000350721.4:c.6520C>T	p.Gln2174Ter	p.Q2174*	ENST00000350721	NM_001184.3	2174	Caa/Taa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907354	32907354	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	30	422	0	ENST00000380152.3:c.1739T>A	p.Ile580Lys	p.I580K	ENST00000380152		580	aTa/aAa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061251	38061252	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGCGTCCAA			P-0074141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	148	467	0	ENST00000250448.2:c.737_738insTTGGACGCT	p.Trp244_Leu246dup	p.W244_L246dup	ENST00000250448	NM_004496.3	244	ctg/ctTTGGACGCTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2130201	2130201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	421	383	0	ENST00000219476.3:c.3433C>T	p.Pro1145Ser	p.P1145S	ENST00000219476	NM_000548.3	1145	Ccg/Tcg																																																																															
SETD8	387893	MSKCC	GRCh37	12	123889486	123889486	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61955123		P-0074840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	19	122	0	ENST00000330479.4:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000330479	NM_020382.3	238	cGg/cAg																																																																															
POLE	5426	MSKCC	GRCh37	12	133235885	133235885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	40	483	0	ENST00000320574.5:c.3271G>A	p.Glu1091Lys	p.E1091K	ENST00000320574	NM_006231.2	1091	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579506	7579506	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	287	411	0	ENST00000269305.4:c.181del	p.Asp61MetfsTer62	p.D61Mfs*62	ENST00000269305	NM_001126112.2	61	Gat/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7579514	7579514	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	307	412	0	ENST00000269305.4:c.173C>G	p.Pro58Arg	p.P58R	ENST00000269305	NM_001126112.2	58	cCa/cGa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41400102	41400102	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	95	298	0	ENST00000373198.4:c.657G>T	p.Trp219Cys	p.W219C	ENST00000373198	NM_133170.3	219	tgG/tgT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242483	55242507	+	protein_altering_variant	In_Frame_Del	DEL	ATCTCCGAAAGCCAACAAGGAAATC	ATCTCCGAAAGCCAACAAGGAAATC	T			P-0074840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	190	267	0	ENST00000275493.2:c.2253_2277delinsT	p.Ser752_Ile759del	p.S752_I759del	ENST00000275493	NM_005228.3	751	acATCTCCGAAAGCCAACAAGGAAATC/acT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519995		P-0075236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	85	387	0	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	63	439	0	ENST00000335508.6:c.1873C>A	p.Arg625Ser	p.R625S	ENST00000335508	NM_012433.2	625	Cgt/Agt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0075236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	92	371	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864369	162864369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	74	385	0	ENST00000366898.1:c.144G>T	p.Lys48Asn	p.K48N	ENST00000366898	NM_004562.2	48	aaG/aaT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510049	187510049	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	48	453	0	ENST00000441802.2:c.13464del	p.Gln4488HisfsTer73	p.Q4488Hfs*73	ENST00000441802	NM_005245.3	4488	caG/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0075419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	116	503	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16265243	16265243	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	128	462	0	ENST00000375759.3:c.10735C>G	p.Leu3579Val	p.L3579V	ENST00000375759	NM_015001.2	3579	Ctg/Gtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0075463-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			479	120	355	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0075463-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			325	151	477	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931589		P-0075463-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			377	58	395	0	ENST00000349496.5:c.101G>A	p.Gly34Glu	p.G34E	ENST00000349496	NM_001904.3	34	gGa/gAa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117647572	117647572	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075463-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			516	40	480	0	ENST00000368508.3:c.5372G>T	p.Ser1791Ile	p.S1791I	ENST00000368508	NM_002944.2	1791	aGc/aTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832320	72832320	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075463-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			484	70	379	0	ENST00000268489.5:c.4261C>G	p.Gln1421Glu	p.Q1421E	ENST00000268489	NM_006885.3	1421	Cag/Gag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0075495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	102	264	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692892	89692892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	18	251	0	ENST00000371953.3:c.376G>T	p.Ala126Ser	p.A126S	ENST00000371953	NM_000314.4	126	Gct/Tct																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99440126	99440126	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	167	382	0	ENST00000268035.6:c.1094G>T	p.Arg365Leu	p.R365L	ENST00000268035	NM_000875.3	365	cGa/cTa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115973	8115973	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	156	465	0	ENST00000346208.3:c.1320del	p.Ala441ProfsTer34	p.A441Pfs*34	ENST00000346208		440	aCc/ac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44937695	44937695	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0075495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	108	255	0	ENST00000377967.4:c.2885del	p.Asn962IlefsTer8	p.N962Ifs*8	ENST00000377967	NM_021140.2	961	acA/ac																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871142	12871143	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0075495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	31	456	0	ENST00000228872.4:c.369_370insGC	p.Asn124AlafsTer22	p.N124Afs*22	ENST00000228872	NM_004064.3	123	-/GC																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94211984	94211984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	120	339	0	ENST00000323929.3:c.461G>A	p.Gly154Glu	p.G154E	ENST00000323929	NM_005591.3	154	gGa/gAa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935258	36935258	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	179	462	0	ENST00000361632.4:c.1469T>C	p.Leu490Pro	p.L490P	ENST00000361632		490	cTg/cCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0075497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	52	246	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	122	415	2	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
CCND1	595	MSKCC	GRCh37	11	69466040	69466040	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	42	472	0	ENST00000227507.2:c.878T>A	p.Val293Glu	p.V293E	ENST00000227507	NM_053056.2	293	gTg/gAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0075497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	151	288	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375048	31375048	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200405601		P-0075497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	36	492	0	ENST00000328111.2:c.445C>T	p.Arg149Trp	p.R149W	ENST00000328111	NM_006892.3	149	Cgg/Tgg																																																																															
CIC	23152	MSKCC	GRCh37	19	42791592	42791592	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	114	579	0	ENST00000575354.2:c.576del	p.Asn193ThrfsTer12	p.N193Tfs*12	ENST00000575354	NM_015125.3	191	agC/ag																																																																															
BCL6	604	MSKCC	GRCh37	3	187440354	187440354	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	40	403	0	ENST00000232014.4:c.2013C>G	p.Ser671Arg	p.S671R	ENST00000232014	NM_001130845.1	671	agC/agG																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467542	66467542	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	33	448	0	ENST00000273854.3:c.727T>G	p.Phe243Val	p.F243V	ENST00000273854	NM_004439.5	243	Ttc/Gtc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533840	63533840	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	128	438	0	ENST00000307078.5:c.1314A>G	p.Ile438Met	p.I438M	ENST00000307078	NM_004655.3	438	atA/atG																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2060897	2060897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	139	550	0	ENST00000349721.2:c.1603G>A	p.Glu535Lys	p.E535K	ENST00000349721	NM_003070.3	535	Gag/Aag																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164757	36164757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	570	406	0	ENST00000300305.3:c.1118C>T	p.Ser373Leu	p.S373L	ENST00000300305		373	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519976		P-0075499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			32	876	433	0	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																															
SMO	6608	MSKCC	GRCh37	7	128845997	128845997	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075499-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	40	351	0	ENST00000249373.3:c.927T>G	p.Asn309Lys	p.N309K	ENST00000249373	NM_005631.4	309	aaT/aaG																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053186	180053186	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	30	574	0	ENST00000261937.6:c.1183G>T	p.Gly395Cys	p.G395C	ENST00000261937	NM_182925.4	395	Ggc/Tgc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777146	9777146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	16	596	0	ENST00000377346.4:c.910C>A	p.Pro304Thr	p.P304T	ENST00000377346	NM_005026.3	304	Cct/Act																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129019	64129019	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0075501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	30	657	0	ENST00000334205.4:c.649A>T	p.Lys217Ter	p.K217*	ENST00000334205	NM_003942.2	217	Aag/Tag																																																																															
GAB1	2549	MSKCC	GRCh37	4	144361435	144361435	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	66	553	0	ENST00000262994.4:c.1485G>T	p.Met495Ile	p.M495I	ENST00000262994	NM_002039.3	495	atG/atT																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287410	33287425	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGCTTTCTTCCTC	CAGGGCTTTCTTCCTC	-			P-0075501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	28	562	0	ENST00000374542.5:c.1672_1687del	p.Glu558CysfsTer7	p.E558Cfs*7	ENST00000374542	NM_001141970.1	558	GAGGAAGAAAGCCCTGtg/tg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0075502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	34	500	0	ENST00000304494.5:c.151-2A>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
ELF3	1999	MSKCC	GRCh37	1	201983019	201983020	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	51	479	0	ENST00000359651.3:c.869dup	p.Leu292ProfsTer9	p.L292Pfs*9	ENST00000359651		290	gag/gAag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0075502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	23	286	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29592354	29592354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	48	325	0	ENST00000358273.4:c.4832G>T	p.Arg1611Leu	p.R1611L	ENST00000358273	NM_001042492.2	1611	cGg/cTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729962	30729962	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs104893819		P-0075502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	51	474	0	ENST00000359013.4:c.1558C>T	p.Arg520Ter	p.R520*	ENST00000359013	NM_001024847.2	520	Cga/Tga																																																																															
TET2	54790	MSKCC	GRCh37	4	106193799	106193799	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	46	442	0	ENST00000380013.4:c.4261T>C	p.Tyr1421His	p.Y1421H	ENST00000380013	NM_001127208.2	1421	Tac/Cac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101612	27101612	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	28	405	1	ENST00000324856.7:c.4899del	p.Met1634Ter	p.M1634*	ENST00000324856	NM_006015.4	1632	Ccc/cc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765123636		P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	21	242	0	ENST00000369902.3:c.71dup	p.Ala25GlyfsTer23	p.A25Gfs*23	ENST00000369902	NM_016169.3	22	gcc/gCcc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925582	114925582	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	33	364	0	ENST00000543371.1:c.1663del	p.Ala555ProfsTer47	p.A555Pfs*47	ENST00000543371	NM_001198531.1	554	Ggg/gg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692783	89692783	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	53	231	0	ENST00000371953.3:c.270del	p.Phe90LeufsTer9	p.F90Lfs*9	ENST00000371953	NM_000314.4	89	ccT/cc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	47	272	2	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	65	289	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67201684	67201684	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376762664		P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	61	447	0	ENST00000312629.5:c.985C>T	p.Arg329Trp	p.R329W	ENST00000312629	NM_003952.2	329	Cgg/Tgg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	42	379	2	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799219	88799219	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	36	365	0	ENST00000360948.2:c.166del	p.Leu56SerfsTer30	p.L56Sfs*30	ENST00000360948	NM_001012338.2	56	Ctc/tc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	34	417	0	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	47	474	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732279	74732279	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	55	426	0	ENST00000359995.5:c.630del	p.Lys211SerfsTer21	p.K211Sfs*21	ENST00000359995	NM_001195427.1	210	ccC/cc																																																																															
YES1	7525	MSKCC	GRCh37	18	747947	747947	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766059693		P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	71	340	0	ENST00000314574.4:c.443C>T	p.Ala148Val	p.A148V	ENST00000314574	NM_005433.3	148	gCg/gTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289746	15289746	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146149484		P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	45	430	0	ENST00000263388.2:c.3725G>A	p.Arg1242His	p.R1242H	ENST00000263388	NM_000435.2	1242	cGc/cAc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621901	1621901	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	54	382	0	ENST00000344749.5:c.891del	p.Gly298GlufsTer96	p.G298Efs*96	ENST00000344749	NM_001136139.2	297	ccC/cc																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110245	3110245	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777099166		P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	46	419	0	ENST00000078429.4:c.235G>A	p.Val79Ile	p.V79I	ENST00000078429	NM_002067.2	79	Gtc/Atc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	20	404	3	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918991	50918991	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1228707178		P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	37	284	0	ENST00000440232.2:c.2728C>T	p.Arg910Trp	p.R910W	ENST00000440232	NM_002691.3	910	Cgg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212166	5212166	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775731386		P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	46	384	0	ENST00000357368.4:c.4865C>T	p.Thr1622Met	p.T1622M	ENST00000357368	NM_002850.3	1622	aCg/aTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403254	213403254	+	frameshift_variant,start_lost,start_retained_variant	Frame_Shift_Del	DEL	T	T	-			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	29	343	0	ENST00000342788.4:c.1del	p.Met1?	p.M1?	ENST00000342788	NM_005235.2	1	Atg/tg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661995	227661995	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs192603668		P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	60	429	0	ENST00000305123.5:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000305123	NM_005544.2	487	cGg/cAg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204623	128204623	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	30	416	0	ENST00000341105.2:c.818del	p.Gly273AspfsTer53	p.G273Dfs*53	ENST00000341105	NM_032638.4	273	gGa/ga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967173	134967173	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370164002		P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	44	361	0	ENST00000398015.3:c.2512G>A	p.Glu838Lys	p.E838K	ENST00000398015	NM_004441.4	838	Gag/Aag																																																																															
TET2	54790	MSKCC	GRCh37	4	106157246	106157246	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	71	374	0	ENST00000380013.4:c.2147C>A	p.Ser716Ter	p.S716*	ENST00000380013	NM_001127208.2	716	tCa/tAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	81	426	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245506	153245506	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	58	366	0	ENST00000281708.4:c.1685C>A	p.Ser562Ter	p.S562*	ENST00000281708	NM_033632.3	562	tCa/tAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534261	187534261	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	36	283	0	ENST00000441802.2:c.9463+2T>C		p.X3155_splice	ENST00000441802	NM_005245.3	3155																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176523067	176523067	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs969219254		P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	24	405	0	ENST00000292408.4:c.1831C>T	p.Arg611Trp	p.R611W	ENST00000292408	NM_213647.1	611	Cgg/Tgg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	51	394	2	ENST00000261937.6:c.89del	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	63	303	0	ENST00000303115.3:c.361del	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	66	338	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805787	32805788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1174402903		P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	20	398	0	ENST00000374899.4:c.223dup	p.Leu75ProfsTer92	p.L75Pfs*92	ENST00000374899	NM_018833.2	75	ctg/cCtg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818836	32818836	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1226281975		P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	48	362	0	ENST00000354258.4:c.1115G>A	p.Arg372Gln	p.R372Q	ENST00000354258	NM_000593.5	372	cGa/cAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	55	329	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151843698	151843698	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370620314		P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	57	301	0	ENST00000262189.6:c.14017C>T	p.Arg4673Cys	p.R4673C	ENST00000262189	NM_170606.2	4673	Cgc/Tgc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729363	41729363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	76	358	0	ENST00000242208.4:c.1166C>T	p.Ser389Leu	p.S389L	ENST00000242208	NM_002192.2	389	tCg/tTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	24	339	0	ENST00000331920.6:c.3921del	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166418	118166418	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	74	393	0	ENST00000369448.3:c.928C>A	p.Leu310Ile	p.L310I	ENST00000369448	NM_017709.3	310	Ctt/Att																																																																															
SPEN	23013	MSKCC	GRCh37	1	16264458	16264458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	21	367	0	ENST00000375759.3:c.10661G>A	p.Arg3554Gln	p.R3554Q	ENST00000375759	NM_015001.2	3554	cGg/cAg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175956195	175956195	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	27	298	0	ENST00000367669.3:c.2017A>G	p.Lys673Glu	p.K673E	ENST00000367669	NM_022457.5	673	Aag/Gag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343582	118343582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	26	373	0	ENST00000534358.1:c.1708C>T	p.Pro570Ser	p.P570S	ENST00000534358	NM_005933.3	570	Cca/Tca																																																																															
APLNR	187	MSKCC	GRCh37	11	57004426	57004426	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	T	T	A			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	58	343	0	ENST00000257254.3:c.53A>T	p.Glu18Val	p.E18V	ENST00000257254		18	gAg/gTg																																																																															
IGF1	3479	MSKCC	GRCh37	12	102869526	102869526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	26	283	0	ENST00000307046.8:c.115C>A	p.Leu39Met	p.L39M	ENST00000307046	NM_001111285.1	39	Ctg/Atg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112579	115112579	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	36	348	0	ENST00000257566.3:c.1161del	p.Glu388ArgfsTer244	p.E388Rfs*244	ENST00000257566	NM_016569.3	387	ccC/cc																																																																															
SETD8	387893	MSKCC	GRCh37	12	123874007	123874010	+	missense_variant	Missense_Mutation	ONP	TGGA	TGGA	CGGC			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	37	353	0	ENST00000330479.4:c.38_41delinsCGGC	p.Val13_Glu14delinsAlaAla	p.V13_E14delinsAA	ENST00000330479	NM_020382.3	13	gTGGAg/gCGGCg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287501	46287501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	68	292	0	ENST00000334344.6:c.5360G>A	p.Arg1787His	p.R1787H	ENST00000334344	NM_152641.2	1787	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425496	49425496	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	73	530	0	ENST00000301067.7:c.12992C>A	p.Pro4331His	p.P4331H	ENST00000301067	NM_003482.3	4331	cCc/cAc																																																																															
KLF5	688	MSKCC	GRCh37	13	73636173	73636173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	66	366	0	ENST00000377687.4:c.436C>A	p.Leu146Met	p.L146M	ENST00000377687	NM_001730.3	146	Ctg/Atg																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30134452	30134452	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	14	306	0	ENST00000263025.4:c.79del	p.Glu27ArgfsTer5	p.E27Rfs*5	ENST00000263025	NM_002746.2	27	Gag/ag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821615	72821616	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	17	350	0	ENST00000268489.5:c.10557_10559dup	p.Gly3527dup	p.G3527dup	ENST00000268489	NM_006885.3	3527	ggc/ggTGGc																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544929	86544929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	42	252	0	ENST00000262426.4:c.754G>A	p.Gly252Ser	p.G252S	ENST00000262426	NM_001451.2	252	Ggc/Agc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15965563	15965563	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	21	314	0	ENST00000268712.3:c.5243del	p.Pro1748LeufsTer14	p.P1748Lfs*14	ENST00000268712	NM_006311.3	1748	cCt/ct																																																																															
NF1	4763	MSKCC	GRCh37	17	29586149	29586149	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	67	263	0	ENST00000358273.4:c.4430+2T>C		p.X1477_splice	ENST00000358273	NM_001042492.2	1477																																																																																
SMARCE1	6605	MSKCC	GRCh37	17	38786971	38786971	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	50	295	0	ENST00000348513.6:c.1022A>C	p.Glu341Ala	p.E341A	ENST00000348513	NM_003079.4	341	gAg/gCg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533742	63533742	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	21	489	0	ENST00000307078.5:c.1412A>G	p.His471Arg	p.H471R	ENST00000307078	NM_004655.3	471	cAc/cGc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349651	15349651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	36	395	0	ENST00000263377.2:c.3923C>T	p.Ala1308Val	p.A1308V	ENST00000263377	NM_058243.2	1308	gCc/gTc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225422510	225422510	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	54	375	0	ENST00000264414.4:c.130A>T	p.Ile44Phe	p.I44F	ENST00000264414	NM_003590.4	44	Atc/Ttc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101190	41101190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	68	349	0	ENST00000373198.4:c.1166G>A	p.Gly389Asp	p.G389D	ENST00000373198	NM_133170.3	389	gGc/gAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178937009	178937009	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	82	358	0	ENST00000263967.3:c.1690A>G	p.Ile564Val	p.I564V	ENST00000263967	NM_006218.2	564	Att/Gtt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715672	30715672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	27	333	0	ENST00000359013.4:c.1405C>T	p.Gln469Ter	p.Q469*	ENST00000359013	NM_001024847.2	469	Cag/Tag																																																																															
MYD88	4615	MSKCC	GRCh37	3	38181878	38181878	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	19	355	0	ENST00000396334.3:c.503-1G>A		p.X168_splice	ENST00000396334	NM_002468.4	168																																																																																
PDGFRA	5156	MSKCC	GRCh37	4	55144574	55144574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	38	339	0	ENST00000257290.5:c.2048T>C	p.Val683Ala	p.V683A	ENST00000257290	NM_006206.4	683	gTc/gCc																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839861	27839861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	57	465	0	ENST00000328488.2:c.233A>G	p.Asp78Gly	p.D78G	ENST00000328488	NM_003533.2	78	gAc/gGc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798093	32798093	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	63	368	0	ENST00000374899.4:c.1586T>C	p.Leu529Pro	p.L529P	ENST00000374899	NM_018833.2	529	cTg/cCg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287384	33287384	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	58	371	0	ENST00000374542.5:c.1713T>G	p.Ile571Met	p.I571M	ENST00000374542	NM_001141970.1	571	atT/atG																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288368	33288368	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	63	411	0	ENST00000374542.5:c.1040G>A	p.Gly347Asp	p.G347D	ENST00000374542	NM_001141970.1	347	gGc/gAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410472	139410472	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	47	312	0	ENST00000277541.6:c.1630C>A	p.Leu544Met	p.L544M	ENST00000277541	NM_017617.3	544	Ctg/Atg																																																																															
XIAP	331	MSKCC	GRCh37	X	123040862	123040862	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	36	294	0	ENST00000355640.3:c.1325G>T	p.Arg442Met	p.R442M	ENST00000355640		442	aGg/aTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222629	53222629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	43	349	0	ENST00000375401.3:c.4307C>T	p.Thr1436Ile	p.T1436I	ENST00000375401	NM_004187.3	1436	aCa/aTa																																																																															
AR	367	MSKCC	GRCh37	X	66863129	66863129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	28	389	0	ENST00000374690.3:c.1648A>G	p.Ile550Val	p.I550V	ENST00000374690	NM_000044.3	550	Att/Gtt																																																																															
USP8	9101	MSKCC	GRCh37	15	50788061	50788061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	74	302	0	ENST00000307179.4:c.2675G>A	p.Arg892Lys	p.R892K	ENST00000307179		892	aGa/aAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577533	7577535	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0075512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	96	376	0	ENST00000269305.4:c.746_748del	p.Arg249_Pro250delinsThr	p.R249_P250delinsT	ENST00000269305	NM_001126112.2	249	aGGCcc/acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075514-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	43	163	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441465	52441465	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0075514-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	67	207	1	ENST00000460680.1:c.387T>A	p.Tyr129Ter	p.Y129*	ENST00000460680	NM_004656.3	129	taT/taA																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106027	8106027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075514-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	46	166	0	ENST00000346208.3:c.847C>A	p.Leu283Met	p.L283M	ENST00000346208		283	Ctg/Atg																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729095	66729101	+	protein_altering_variant	In_Frame_Del	DEL	GGAGATC	GGAGATC	A			P-0075514-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	67	144	0	ENST00000307102.5:c.303_309delinsA	p.Glu102_Ile103del	p.E102_I103del	ENST00000307102	NM_002755.3	101	ctGGAGATC/ctA																																																																															
INHA	3623	MSKCC	GRCh37	2	220437115	220437115	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075514-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	47	98	0	ENST00000243786.2:c.19C>G	p.Leu7Val	p.L7V	ENST00000243786	NM_002191.3	7	Ctc/Gtc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752396	57752396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075514-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	14	170	0	ENST00000274289.3:c.1177G>A	p.Glu393Lys	p.E393K	ENST00000274289	NM_006622.3	393	Gaa/Aaa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32790086	32790086	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075514-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	27	137	0	ENST00000374899.4:c.1942T>C	p.Trp648Arg	p.W648R	ENST00000374899	NM_018833.2	648	Tgg/Cgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	25	352	0	ENST00000269305.4:c.527G>C	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	tGc/tCc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0075541-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	130	330	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075541-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	143	469	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075541-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	70	425	0	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987207	36987207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075541-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	121	346	0	ENST00000354822.5:c.482C>T	p.Pro161Leu	p.P161L	ENST00000354822	NM_001079668.2	161	cCg/cTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249469	153249469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075541-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	112	377	2	ENST00000281708.4:c.1309G>A	p.Gly437Arg	p.G437R	ENST00000281708	NM_033632.3	437	Gga/Aga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11303178	11303178	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763879621		P-0075541-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	31	381	0	ENST00000361445.4:c.1405G>A	p.Ala469Thr	p.A469T	ENST00000361445	NM_004958.3	469	Gcc/Acc																																																																															
ALB	213	MSKCC	GRCh37	4	74282071	74282071	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs779988470		P-0075541-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	79	228	0	ENST00000295897.4:c.1289+1G>A		p.X430_splice	ENST00000295897	NM_000477.5	430																																																																																
CYP19A1	1588	MSKCC	GRCh37	15	51503190	51503190	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201638381		P-0075541-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	82	365	0	ENST00000260433.2:c.1327G>A	p.Ala443Thr	p.A443T	ENST00000260433		443	Gcc/Acc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432737	49432737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075541-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	162	417	0	ENST00000301067.7:c.8402G>A	p.Arg2801Gln	p.R2801Q	ENST00000301067	NM_003482.3	2801	cGa/cAa																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430711	181430711	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762331271		P-0075541-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	70	458	0	ENST00000325404.1:c.563C>T	p.Ala188Val	p.A188V	ENST00000325404	NM_003106.3	188	gCg/gTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70333076	70333076	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0075541-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	170	402	0	ENST00000373644.4:c.984del	p.Lys328AsnfsTer38	p.K328Nfs*38	ENST00000373644	NM_030625.2	327	atA/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0075547-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	78	471	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0075547-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	61	284	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
ALK	238	MSKCC	GRCh37	2	29498313	29498313	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075547-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	32	394	0	ENST00000389048.3:c.1867G>T	p.Val623Leu	p.V623L	ENST00000389048	NM_004304.4	623	Gtg/Ttg																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551787	150551787	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1411237418		P-0075547-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	31	409	0	ENST00000369026.2:c.220C>T	p.Arg74Trp	p.R74W	ENST00000369026	NM_021960.4	74	Cgg/Tgg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436159	110436159	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075547-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	33	435	0	ENST00000375856.3:c.2242G>T	p.Gly748Cys	p.G748C	ENST00000375856	NM_003749.2	748	Ggt/Tgt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618737	37618737	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs142040871		P-0075547-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	42	460	0	ENST00000447079.4:c.413G>T	p.Ser138Ile	p.S138I	ENST00000447079	NM_015083.1	138	aGc/aTc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39003708	39003708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075547-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	35	338	0	ENST00000357387.3:c.212G>T	p.Gly71Val	p.G71V	ENST00000357387	NM_152756.3	71	gGc/gTc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964323	70964323	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075547-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	18	196	0	ENST00000276594.2:c.1705G>C	p.Glu569Gln	p.E569Q	ENST00000276594	NM_024504.3	569	Gaa/Caa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100052	30100052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075547-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	37	438	0	ENST00000331968.5:c.1568G>A	p.Gly523Asp	p.G523D	ENST00000331968	NM_002742.2	523	gGc/gAc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665059	138665059	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075547-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	23	247	0	ENST00000330315.3:c.506C>A	p.Ala169Asp	p.A169D	ENST00000330315	NM_023067.3	169	gCc/gAc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41234451	41234451	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs41293455		P-0075549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	506	478	0	ENST00000357654.3:c.4327C>T	p.Arg1443Ter	p.R1443*	ENST00000357654	NM_007294.3	1443	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0075549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	907	614	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0075549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	34	253	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945034	151945034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	16	154	0	ENST00000262189.6:c.2485G>A	p.Ala829Thr	p.A829T	ENST00000262189	NM_170606.2	829	Gct/Act																																																																															
CTR9	9646	MSKCC	GRCh37	11	10776559	10776559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	243	515	0	ENST00000361367.2:c.199G>A	p.Ala67Thr	p.A67T	ENST00000361367	NM_014633.3	67	Gca/Aca																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94179004	94179018	+	inframe_deletion	In_Frame_Del	DEL	TGACACAGCAGTCTT	TGACACAGCAGTCTT	-			P-0075549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	52	285	0	ENST00000323929.3:c.1825_1839del	p.Lys609_Ser613del	p.K609_S613del	ENST00000323929	NM_005591.3	609	AAGACTGCTGTGTCA/-																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170002385	170002385	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0075549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	60	379	0	ENST00000295797.4:c.1203+1G>T		p.X401_splice	ENST00000295797	NM_002740.5	401																																																																																
MDC1	9656	MSKCC	GRCh37	6	30673205	30673205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	74	507	0	ENST00000376406.3:c.3755C>T	p.Pro1252Leu	p.P1252L	ENST00000376406	NM_014641.2	1252	cCt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0075578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	233	532	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790168	40790168	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745346735		P-0075578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	73	496	0	ENST00000373198.4:c.2563G>A	p.Gly855Arg	p.G855R	ENST00000373198	NM_133170.3	855	Ggg/Agg																																																																															
APC	324	MSKCC	GRCh37	5	112175765	112175766	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCACAGAAAGTACTCCAGA			P-0075578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	60	438	0	ENST00000257430.4:c.4478_4479insAGAAAGTACTCCAGACCAC	p.Gly1499HisfsTer21	p.G1499Hfs*21	ENST00000257430	NM_000038.5	1492	gcc/gCCACAGAAAGTACTCCAGAcc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123196975	123196975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	56	304	0	ENST00000218089.9:c.1741G>T	p.Asp581Tyr	p.D581Y	ENST00000218089	NM_001042749.1	581	Gat/Tat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178109	56178109	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	74	502	0	ENST00000399503.3:c.3082C>A	p.Gln1028Lys	p.Q1028K	ENST00000399503	NM_005921.1	1028	Caa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0075579-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	95	304	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
IL10	3586	MSKCC	GRCh37	1	206944256	206944256	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374619208		P-0073457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1192	151	372	0	ENST00000423557.1:c.374G>A	p.Arg125His	p.R125H	ENST00000423557	NM_000572.2	125	cGc/cAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	223	470	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62319000	62319000	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	T	T	G			P-0073457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			820	58	396	0	ENST00000482936.1:c.1358T>G	p.Leu453Arg	p.L453R	ENST00000482936		453	cTg/cGg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466601	120466601	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	165	318	0	ENST00000256646.2:c.4518C>G	p.Asp1506Glu	p.D1506E	ENST00000256646	NM_024408.3	1506	gaC/gaG																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18473929	18473929	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	117	165	0	ENST00000266497.5:c.1171C>G	p.Gln391Glu	p.Q391E	ENST00000266497		391	Caa/Gaa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032206	26032206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	195	473	0	ENST00000244661.2:c.83A>G	p.Lys28Arg	p.K28R	ENST00000244661	NM_003537.3	28	aAg/aGg																																																																															
HGF	3082	MSKCC	GRCh37	7	81350155	81350155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	159	179	0	ENST00000222390.5:c.1177C>A	p.Arg393Ser	p.R393S	ENST00000222390	NM_000601.4	393	Cgt/Agt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692953	89692953	+	stop_gained	Nonsense_Mutation	SNP	T	T	A	rs786204933		P-0073675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			531	176	437	0	ENST00000371953.3:c.437T>A	p.Leu146Ter	p.L146*	ENST00000371953	NM_000314.4	146	tTa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs760043106		P-0073675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	167	582	0	ENST00000269305.4:c.584T>G	p.Ile195Ser	p.I195S	ENST00000269305	NM_001126112.2	195	aTc/aGc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918484	44918552	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTTCCAGTGTGCTATATCAGCAGCAAAATCAGCCCATGGATGCTTTACAGGCCTATATTTGTGCTGTA	CTTTCCAGTGTGCTATATCAGCAGCAAAATCAGCCCATGGATGCTTTACAGGCCTATATTTGTGCTGTA	-			P-0073675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			156	185	211	0	ENST00000377967.4:c.975-7_1036del		p.X325_splice	ENST00000377967	NM_021140.2	325																																																																																
PTEN	5728	MSKCC	GRCh37	10	89724981	89725093	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCACTAAATAGTTTAAGATGAGTCATATTTGTGGGTTTTCATTTTAAATTTTCTTTCTCTAGGTGAAGCTGTACTTCACAAAAACAGTAGAGGAGCCGTCAAATCCAGAGGC	TTCACTAAATAGTTTAAGATGAGTCATATTTGTGGGTTTTCATTTTAAATTTTCTTTCTCTAGGTGAAGCTGTACTTCACAAAAACAGTAGAGGAGCCGTCAAATCCAGAGGC	-			P-0073675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	32	246	0	ENST00000371953.3:c.1027-62_1077del		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																																
CDKN1B	1027	MSKCC	GRCh37	12	12871771	12871771	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			612	195	407	1	ENST00000228872.4:c.491del	p.Asn164ThrfsTer61	p.N164Tfs*61	ENST00000228872	NM_004064.3	163	cAa/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs757274881		P-0074559-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	115	460	0	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089592	27089593	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0074559-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	71	465	0	ENST00000324856.7:c.2549dup	p.Tyr850Ter	p.Y850*	ENST00000324856	NM_006015.4	850	tat/tAat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874092	151874093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0074559-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			549	132	376	0	ENST00000262189.6:c.8445dup	p.Ser2816IlefsTer6	p.S2816Ifs*6	ENST00000262189	NM_170606.2	2815	-/A																																																																															
POLE	5426	MSKCC	GRCh37	12	133215748	133215748	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141519273		P-0074559-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			495	61	387	0	ENST00000320574.5:c.5515C>T	p.Arg1839Cys	p.R1839C	ENST00000320574	NM_006231.2	1839	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0074559-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			303	123	257	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974725	21974736	+	inframe_deletion	In_Frame_Del	DEL	CGCCTCCAGCAG	CGCCTCCAGCAG	-			P-0074559-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			419	103	399	0	ENST00000304494.5:c.91_102del	p.Leu31_Ala34del	p.L31_A34del	ENST00000304494	NM_000077.4	31	CTGCTGGAGGCG/-																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0074727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	148	289	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
APC	324	MSKCC	GRCh37	5	112175939	112175940	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGAA			P-0074727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	159	376	0	ENST00000257430.4:c.4652_4655dup	p.Ala1553ArgfsTer7	p.A1553Rfs*7	ENST00000257430	NM_000038.5	1550	gag/gAGAAag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060642	38060642	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	250	425	0	ENST00000250448.2:c.1347del	p.Ile450SerfsTer20	p.I450Sfs*20	ENST00000250448	NM_004496.3	449	ccC/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0074876-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			516	239	338	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913355		P-0074876-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			288	104	224	0	ENST00000288602.6:c.1406G>T	p.Gly469Val	p.G469V	ENST00000288602	NM_004333.4	469	gGa/gTa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0074876-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			461	171	307	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468435	89468435	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs748999069		P-0074876-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			294	105	280	0	ENST00000336596.2:c.1969G>T	p.Val657Phe	p.V657F	ENST00000336596	NM_005233.5	657	Gtt/Ttt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2954874	2954874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074876-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			752	138	271	0	ENST00000396946.4:c.2836G>A	p.Glu946Lys	p.E946K	ENST00000396946	NM_032415.4	946	Gaa/Aaa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566740	212566740	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074876-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			542	96	332	0	ENST00000342788.4:c.1441A>G	p.Ile481Val	p.I481V	ENST00000342788	NM_005235.2	481	Atc/Gtc																																																																															
BTK	695	MSKCC	GRCh37	X	100611053	100611053	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074876-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			595	32	272	0	ENST00000308731.7:c.1553T>A	p.Leu518His	p.L518H	ENST00000308731	NM_000061.2	518	cTt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579386	7579386	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0074994-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			572	128	407	0	ENST00000269305.4:c.301A>T	p.Lys101Ter	p.K101*	ENST00000269305	NM_001126112.2	101	Aaa/Taa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12006363	12006363	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0074994-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			472	106	404	0	ENST00000396373.4:c.331G>T	p.Asp111Tyr	p.D111Y	ENST00000396373	NM_001987.4	111	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0074994-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			286	99	258	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732961	30732961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074994-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			521	112	366	0	ENST00000359013.4:c.1649C>T	p.Pro550Leu	p.P550L	ENST00000359013	NM_001024847.2	550	cCa/cTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540038	187540038	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074994-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			484	94	358	0	ENST00000441802.2:c.7702T>A	p.Leu2568Ile	p.L2568I	ENST00000441802	NM_005245.3	2568	Tta/Ata																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78811766	78811766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074994-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			534	45	290	0	ENST00000306801.3:c.1181C>T	p.Pro394Leu	p.P394L	ENST00000306801	NM_020761.2	394	cCg/cTg																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29207383	29207383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074994-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			333	64	227	0	ENST00000240100.2:c.413C>T	p.Thr138Ile	p.T138I	ENST00000240100	NM_001394.6	138	aCc/aTc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62325785	62325785	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T			P-0074994-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			558	95	340	0	ENST00000482936.1:c.3053C>T	p.Pro1018Leu	p.P1018L	ENST00000482936		1018	cCc/cTc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2123912	2123912	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074994-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			613	100	374	0	ENST00000349721.2:c.3956C>G	p.Ala1319Gly	p.A1319G	ENST00000349721	NM_003070.3	1319	gCc/gGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0075081-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			465	29	403	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0075081-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			320	28	338	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
CD79A	973	MSKCC	GRCh37	19	42383707	42383707	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782414774		P-0075081-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			270	23	334	0	ENST00000221972.3:c.482C>T	p.Thr161Met	p.T161M	ENST00000221972	NM_021601.3	161	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249092	55249092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075081-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			439	30	415	0	ENST00000275493.2:c.2390G>C	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	tGc/tCc																																																																															
MET	4233	MSKCC	GRCh37	7	116381050	116381050	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075081-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	19	350	0	ENST00000397752.3:c.1672C>T	p.Gln558Ter	p.Q558*	ENST00000397752	NM_000245.2	558	Caa/Taa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781847	3781848	+	missense_variant	Missense_Mutation	DNP	TT	TT	GG			P-0075081-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			345	30	382	0	ENST00000262367.5:c.4819_4820delinsCC	p.Lys1607Pro	p.K1607P	ENST00000262367	NM_004380.2	1607	AAg/CCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431410	49431410	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075081-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			339	25	407	0	ENST00000301067.7:c.9729C>A	p.Ser3243Arg	p.S3243R	ENST00000301067	NM_003482.3	3243	agC/agA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075088-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			649	97	274	0	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910593	50910593	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372429157		P-0075088-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			939	126	315	0	ENST00000440232.2:c.1696G>A	p.Glu566Lys	p.E566K	ENST00000440232	NM_002691.3	566	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0075088-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			348	202	324	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390779	139390779	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771318379		P-0075088-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			964	55	365	0	ENST00000277541.6:c.7412C>T	p.Ser2471Leu	p.S2471L	ENST00000277541	NM_017617.3	2471	tCg/tTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582153	95582153	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075088-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			640	50	361	0	ENST00000343455.3:c.1758G>C	p.Leu586Phe	p.L586F	ENST00000343455	NM_177438.2	586	ttG/ttC																																																																															
BLM	641	MSKCC	GRCh37	15	91298084	91298084	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075088-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			446	31	331	0	ENST00000355112.3:c.1003C>G	p.Leu335Val	p.L335V	ENST00000355112	NM_000057.2	335	Ctt/Gtt																																																																															
SESN3	143686	MSKCC	GRCh37	11	94963964	94963964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075088-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			531	81	270	0	ENST00000536441.1:c.61C>T	p.Arg21Trp	p.R21W	ENST00000536441	NM_144665.3	21	Cgg/Tgg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198281625	198281625	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075088-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			591	78	345	0	ENST00000335508.6:c.506G>T	p.Arg169Met	p.R169M	ENST00000335508	NM_012433.2	169	aGg/aTg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149503867	149503867	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075088-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			789	93	406	0	ENST00000261799.4:c.1969C>A	p.His657Asn	p.H657N	ENST00000261799	NM_002609.3	657	Cac/Aac																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465489	99465489	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075088-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			872	50	439	0	ENST00000268035.6:c.2314G>C	p.Glu772Gln	p.E772Q	ENST00000268035	NM_000875.3	772	Gag/Cag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865563	57865564	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0075088-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			864	373	467	0	ENST00000228682.2:c.3040_3041delinsAA	p.Pro1014Asn	p.P1014N	ENST00000228682	NM_005269.2	1014	CCt/AAt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244257	46244257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075088-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			710	128	584	0	ENST00000334344.6:c.2351C>T	p.Pro784Leu	p.P784L	ENST00000334344	NM_152641.2	784	cCt/cTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485880	8485882	+	missense_variant	Missense_Mutation	ONP	CAT	CAT	GAG			P-0075088-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			687	95	464	0	ENST00000356435.5:c.2935_2937delinsCTC	p.Met979Leu	p.M979L	ENST00000356435		979	ATG/CTC																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0075157-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			398	212	402	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553441	106553441	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746535819		P-0075157-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			364	212	388	0	ENST00000369096.4:c.1406C>T	p.Ser469Leu	p.S469L	ENST00000369096	NM_001198.3	469	tCg/tTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448439	49448439	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075157-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	183	419	0	ENST00000301067.7:c.272G>A	p.Trp91Ter	p.W91*	ENST00000301067	NM_003482.3	91	tGg/tAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1219380	1219381	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0075157-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			327	181	407	0	ENST00000326873.7:c.432_433delinsTT	p.Glu145Ter	p.E145*	ENST00000326873	NM_000455.4	144	ccGGag/ccTTag																																																																															
YES1	7525	MSKCC	GRCh37	18	743265	743265	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075157-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			457	76	379	0	ENST00000314574.4:c.875G>T	p.Trp292Leu	p.W292L	ENST00000314574	NM_005433.3	292	tGg/tTg																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14303155	14303155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075157-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			215	199	201	0	ENST00000256196.4:c.520G>T	p.Val174Phe	p.V174F	ENST00000256196		174	Gtt/Ttt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260038	16260039	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0075157-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			666	69	505	0	ENST00000375759.3:c.7303_7304delinsTA	p.Pro2435Tyr	p.P2435Y	ENST00000375759	NM_015001.2	2435	CCc/TAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828748	72828748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075157-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	179	355	0	ENST00000268489.5:c.7833G>A	p.Met2611Ile	p.M2611I	ENST00000268489	NM_006885.3	2611	atG/atA																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344708	118344708	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075157-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			586	83	372	0	ENST00000534358.1:c.2834T>C	p.Ile945Thr	p.I945T	ENST00000534358	NM_005933.3	945	aTt/aCt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149505137	149505137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075157-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			485	90	398	0	ENST00000261799.4:c.1678C>A	p.Pro560Thr	p.P560T	ENST00000261799	NM_002609.3	560	Cca/Aca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306615	41306616	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0075157-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			517	134	345	0	ENST00000373198.4:c.1043_1044delinsAT	p.Trp348Tyr	p.W348Y	ENST00000373198	NM_133170.3	348	tGG/tAT																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225468	26225468	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075157-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			704	337	537	0	ENST00000360408.1:c.86G>T	p.Ser29Ile	p.S29I	ENST00000360408	NM_003532.2	29	aGc/aTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259580	16259580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075157-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			660	105	458	0	ENST00000375759.3:c.6845C>A	p.Ser2282Tyr	p.S2282Y	ENST00000375759	NM_015001.2	2282	tCt/tAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286285	66286285	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0075157-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			197	48	280	0	ENST00000273854.3:c.1403-2A>T		p.X468_splice	ENST00000273854	NM_004439.5	468																																																																																
FAT1	2195	MSKCC	GRCh37	4	187540374	187540374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075157-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			445	96	439	0	ENST00000441802.2:c.7366G>C	p.Ala2456Pro	p.A2456P	ENST00000441802	NM_005245.3	2456	Gcc/Ccc																																																																															
NF1	4763	MSKCC	GRCh37	17	29667604	29667623	+	frameshift_variant	Frame_Shift_Del	DEL	ACCGCACTTCTTGAACAAAA	ACCGCACTTCTTGAACAAAA	T			P-0075157-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			304	168	311	0	ENST00000358273.4:c.7003_7022delinsT	p.Thr2335SerfsTer5	p.T2335Sfs*5	ENST00000358273	NM_001042492.2	2335	ACCGCACTTCTTGAACAAAAc/Tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0075171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	167	381	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0075171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	71	388	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs121913468		P-0075171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	175	336	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880255	37880255	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	19	331	0	ENST00000269571.5:c.2299A>T	p.Ile767Phe	p.I767F	ENST00000269571		767	Atc/Ttc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651532	52651532	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	75	299	0	ENST00000394830.3:c.1564C>T	p.Arg522Ter	p.R522*	ENST00000394830	NM_018313.4	522	Cga/Tga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483885	88483885	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767613437		P-0075171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	108	365	0	ENST00000360948.2:c.1685C>T	p.Pro562Leu	p.P562L	ENST00000360948	NM_001012338.2	562	cCg/cTg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981306	201981307	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GT			P-0075171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	85	333	0	ENST00000359651.3:c.385+2_385+3dup		p.T129fs	ENST00000359651		129	act/aGTct																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139820175	139820175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	88	349	0	ENST00000247668.2:c.1328T>C	p.Val443Ala	p.V443A	ENST00000247668	NM_021138.3	443	gTg/gCg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591969	48592177	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAGCAAGGTATTGATTGTATAGTCAGATAGTTACTTTAAAAAATTGAGCATAGTACATTGTCTTTTATTCAAGGTTATGTTTTCCCATGTACATTATATGTGTTCTTAAATATAAATAAAGGAATAAAGGTCATGTTGAAAACTCAGAATTTGTAAGCACTCCATCTTAATTGTCGGTGTTTTTGTTGTTTAACATATAATGATAAAA	AGAGCAAGGTATTGATTGTATAGTCAGATAGTTACTTTAAAAAATTGAGCATAGTACATTGTCTTTTATTCAAGGTTATGTTTTCCCATGTACATTATATGTGTTCTTAAATATAAATAAAGGAATAAAGGTCATGTTGAAAACTCAGAATTTGTAAGCACTCCATCTTAATTGTCGGTGTTTTTGTTGTTTAACATATAATGATAAAA	-			P-0075171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	39	345	0	ENST00000342988.3:c.1132_1139+201del		p.X378_splice	ENST00000342988	NM_005359.5	378																																																																																
CDK12	51755	MSKCC	GRCh37	17	37627360	37627361	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0075173-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	112	338	0	ENST00000447079.4:c.1280dup	p.Leu427PhefsTer3	p.L427Ffs*3	ENST00000447079	NM_015083.1	425	-/T																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46727031	46727031	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075173-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	23	340	0	ENST00000371975.4:c.865A>T	p.Ser289Cys	p.S289C	ENST00000371975	NM_003579.3	289	Agt/Tgt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061102	38061197	+	inframe_deletion	In_Frame_Del	DEL	TCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGC	TCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGC	-			P-0075173-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	170	304	0	ENST00000250448.2:c.792_887del	p.Lys264_Asp296delinsAsn	p.K264_D296delinsN	ENST00000250448	NM_004496.3	264	aaGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGCGGCCCTGAGAGCCGCAAGGAc/aac																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100143	30100143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs191202207		P-0075197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	96	373	0	ENST00000331968.5:c.1477G>A	p.Glu493Lys	p.E493K	ENST00000331968	NM_002742.2	493	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0075205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	125	505	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710597	114710597	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	42	350	0	ENST00000543371.1:c.82G>T	p.Glu28Ter	p.E28*	ENST00000543371	NM_001198531.1	28	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	47	350	0	ENST00000257430.4:c.4063del	p.Ser1355LeufsTer60	p.S1355Lfs*60	ENST00000257430	NM_000038.5	1354	Ttt/tt																																																																															
ATM	472	MSKCC	GRCh37	11	108172509	108172510	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	24	322	0	ENST00000278616.4:c.5318dup	p.Phe1774ValfsTer8	p.F1774Vfs*8	ENST00000278616	NM_000051.3	1771	aga/agAa																																																																															
ATM	472	MSKCC	GRCh37	11	108186758	108186758	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs876659558		P-0075205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	29	420	0	ENST00000278616.4:c.6116A>G	p.Glu2039Gly	p.E2039G	ENST00000278616	NM_000051.3	2039	gAa/gGa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112272	115112272	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs544562535		P-0075205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	31	315	0	ENST00000257566.3:c.1468G>A	p.Ala490Thr	p.A490T	ENST00000257566	NM_016569.3	490	Gcc/Acc																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127912146	127912146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	41	305	0	ENST00000373547.4:c.724G>A	p.Glu242Lys	p.E242K	ENST00000373547	NM_002721.4	242	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0075205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	77	260	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	37	271	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446870	29446927	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGCCAACTTCCCTAGTGCCCTCCAGGACACTCAGGAGTCCAGCACCACTGCCACTG	AGGGCCAACTTCCCTAGTGCCCTCCAGGACACTCAGGAGTCCAGCACCACTGCCACTG	-			P-0075205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	21	343	0	ENST00000544604.2:c.2704_2761del	p.Ala902LeufsTer35	p.A902Lfs*35	ENST00000544604	NM_001206998.1	901	AGGGCCAACTTCCCTAGTGCCCTCCAGGACACTCAGGAGTCCAGCACCACTGCCACTGag/ag																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081684	143081684	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	39	319	0	ENST00000262992.4:c.1390C>T	p.Gln464Ter	p.Q464*	ENST00000262992	NM_001101669.1	464	Caa/Taa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867506	35867506	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	43	336	0	ENST00000303115.3:c.320T>G	p.Ile107Arg	p.I107R	ENST00000303115	NM_002185.3	107	aTa/aGa																																																																															
APC	324	MSKCC	GRCh37	5	112175611	112175632	+	frameshift_variant	Frame_Shift_Del	DEL	ACCACCTCCTCAAACAGCTCAA	ACCACCTCCTCAAACAGCTCAA	-			P-0075205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	103	418	0	ENST00000257430.4:c.4324_4345del	p.Pro1442SerfsTer24	p.P1442Sfs*24	ENST00000257430	NM_000038.5	1440	ccACCACCTCCTCAAACAGCTCAA/cc																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0075208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	154	445	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	251	404	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
ACVR1	90	MSKCC	GRCh37	2	158622630	158622630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	232	417	0	ENST00000263640.3:c.869C>T	p.Ser290Leu	p.S290L	ENST00000263640	NM_001105.4	290	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	210	320	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FH	2271	MSKCC	GRCh37	1	241663875	241663875	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	43	139	0	ENST00000366560.3:c.1252C>G	p.His418Asp	p.H418D	ENST00000366560	NM_000143.3	418	Cac/Gac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55224241	55224241	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	31	383	0	ENST00000275493.2:c.1022G>T	p.Gly341Val	p.G341V	ENST00000275493	NM_005228.3	341	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579320	7579321	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0075208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	228	448	0	ENST00000269305.4:c.366dup	p.Thr123AspfsTer26	p.T123Dfs*26	ENST00000269305	NM_001126112.2	122	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7579419	7579420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0075212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	131	437	0	ENST00000269305.4:c.267dup	p.Ser90LeufsTer59	p.S90Lfs*59	ENST00000269305	NM_001126112.2	89	-/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0075212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	8	264	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435970	49435999	+	inframe_deletion	In_Frame_Del	DEL	TGAAGACTCCGCTGGTTATAGGAGAGTCCG	TGAAGACTCCGCTGGTTATAGGAGAGTCCG	-			P-0075212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	83	349	0	ENST00000301067.7:c.5982_6011del	p.Asp1994_Gln2004delinsGlu	p.D1994_Q2004delinsE	ENST00000301067	NM_003482.3	1994	gaCGGACTCTCCTATAACCAGCGGAGTCTTCAg/gag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095665	178095665	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	G	G	TA			P-0075212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	44	441	0	ENST00000397062.3:c.1666delinsTA	p.Gln556Ter	p.Q556*	ENST00000397062	NM_006164.4	556	Caa/TAaa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117755	70117755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	155	370	0	ENST00000245479.2:c.223G>A	p.Glu75Lys	p.E75K	ENST00000245479	NM_000346.3	75	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916925	178916927	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0075216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	172	265	0	ENST00000263967.3:c.314_316del	p.Val105del	p.V105del	ENST00000263967	NM_006218.2	104	ccAGTa/cca																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519741	176519741	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	152	320	0	ENST00000292408.4:c.1013C>G	p.Ser338Cys	p.S338C	ENST00000292408	NM_213647.1	338	tCc/tGc																																																																															
ATM	472	MSKCC	GRCh37	11	108155091	108155091	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	180	324	0	ENST00000278616.4:c.3884T>C	p.Leu1295Pro	p.L1295P	ENST00000278616	NM_000051.3	1295	cTt/cCt																																																																															
EZH2	2146	MSKCC	GRCh37	7	148526914	148526914	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	141	292	0	ENST00000320356.2:c.390C>G	p.Asn130Lys	p.N130K	ENST00000320356	NM_004456.4	130	aaC/aaG																																																																															
ALK	238	MSKCC	GRCh37	2	29606601	29606601	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371652715		P-0075216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	137	272	0	ENST00000389048.3:c.1279G>A	p.Glu427Lys	p.E427K	ENST00000389048	NM_004304.4	427	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0075217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	204	325	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0075217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	143	301	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0075217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	66	229	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175630	112175630	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	173	340	0	ENST00000257430.4:c.4339C>T	p.Gln1447Ter	p.Q1447*	ENST00000257430	NM_000038.5	1447	Caa/Taa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			49	166	159	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468033	50468033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	150	331	0	ENST00000331340.3:c.1268G>A	p.Arg423His	p.R423H	ENST00000331340	NM_006060.4	423	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	98	206	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348016	89348016	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	157	303	0	ENST00000301030.4:c.4934T>C	p.Leu1645Pro	p.L1645P	ENST00000301030	NM_001256183.1	1645	cTg/cCg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178091	56178091	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	153	323	0	ENST00000399503.3:c.3064C>A	p.Gln1022Lys	p.Q1022K	ENST00000399503	NM_005921.1	1022	Cag/Aag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37673755	37673755	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	74	294	0	ENST00000447079.4:c.2909A>G	p.Asn970Ser	p.N970S	ENST00000447079	NM_015083.1	970	aAc/aGc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738955	145738955	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0075219-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	179	518	0	ENST00000428558.2:c.2200G>A	p.Gly734Ser	p.G734S	ENST00000428558	NM_004260.3	734	Ggt/Agt																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366616	40366616	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075219-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	81	407	0	ENST00000397332.2:c.581A>T	p.Asp194Val	p.D194V	ENST00000397332	NM_001033082.2	194	gAc/gTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178223	56178223	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075219-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	80	464	0	ENST00000399503.3:c.3196A>G	p.Thr1066Ala	p.T1066A	ENST00000399503	NM_005921.1	1066	Acc/Gcc																																																																															
TRIP13	9319	MSKCC	GRCh37	5	896871	896871	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075219-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	57	443	0	ENST00000166345.3:c.350A>C	p.Glu117Ala	p.E117A	ENST00000166345	NM_004237.3	117	gAa/gCa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25991642	25991673	+	frameshift_variant	Frame_Shift_Del	DEL	TTTGACAGTCTTTAGTGAGAGATGCTGGTTGG	TTTGACAGTCTTTAGTGAGAGATGCTGGTTGG	-			P-0075221-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	92	308	0	ENST00000435504.4:c.569_600del	p.Ser190CysfsTer4	p.S190Cfs*4	ENST00000435504		190	tCCAACCAGCATCTCTCACTAAAGACTGTCAAA/t																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0075223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	126	239	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0075223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			75	15	181	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519999		P-0075223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	57	254	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																															
TEK	7010	MSKCC	GRCh37	9	27169568	27169568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778829843		P-0075223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	30	319	0	ENST00000380036.4:c.569C>T	p.Ser190Leu	p.S190L	ENST00000380036	NM_000459.3	190	tCg/tTg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45860533	45860533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	82	319	0	ENST00000391945.4:c.1474C>T	p.Pro492Ser	p.P492S	ENST00000391945	NM_000400.3	492	Cct/Tct																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033191	69033191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	15	299	0	ENST00000288368.4:c.3631C>T	p.Pro1211Ser	p.P1211S	ENST00000288368	NM_024870.2	1211	Cca/Tca																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56798144	56798144	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	33	280	0	ENST00000337432.4:c.875G>C	p.Arg292Thr	p.R292T	ENST00000337432	NM_058216.2	292	aGa/aCa																																																																															
MED12	9968	MSKCC	GRCh37	X	70360507	70360507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	105	314	0	ENST00000374080.3:c.6067C>T	p.Gln2023Ter	p.Q2023*	ENST00000374080		2023	Cag/Tag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117718211	117718211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	21	331	0	ENST00000368508.3:c.646G>A	p.Asp216Asn	p.D216N	ENST00000368508	NM_002944.2	216	Gat/Aat																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5208363	5208363	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	35	285	1	ENST00000357368.4:c.5527G>C	p.Asp1843His	p.D1843H	ENST00000357368	NM_002850.3	1843	Gac/Cac																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645310	67645310	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	18	375	0	ENST00000264010.4:c.575A>G	p.Gln192Arg	p.Q192R	ENST00000264010	NM_006565.3	192	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0075243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	111	353	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178947827	178947827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	80	334	0	ENST00000263967.3:c.2702G>T	p.Cys901Phe	p.C901F	ENST00000263967	NM_006218.2	901	tGt/tTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499832	8499832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	48	343	0	ENST00000356435.5:c.2137G>A	p.Gly713Ser	p.G713S	ENST00000356435		713	Ggt/Agt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087389	27087389	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	81	328	0	ENST00000324856.7:c.1963G>T	p.Gly655Ter	p.G655*	ENST00000324856	NM_006015.4	655	Gga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0075243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	113	227	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
WT1	7490	MSKCC	GRCh37	11	32456353	32456353	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	375	328	0	ENST00000332351.3:c.539T>C	p.Phe180Ser	p.F180S	ENST00000332351	NM_024426.4	180	tTc/tCc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18534713	18534713	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	292	382	0	ENST00000266497.5:c.1771G>T	p.Gly591Trp	p.G591W	ENST00000266497		591	Ggg/Tgg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28601306	28601306	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	129	332	0	ENST00000241453.7:c.2126A>C	p.Lys709Thr	p.K709T	ENST00000241453	NM_004119.2	709	aAa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			756	383	354	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0075245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	775	409	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1206950	1206950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			998	837	267	0	ENST00000326873.7:c.38C>A	p.Thr13Lys	p.T13K	ENST00000326873	NM_000455.4	13	aCg/aAg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0075245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1134	293	386	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047947	180047947	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	524	411	0	ENST00000261937.6:c.2228C>A	p.Ala743Glu	p.A743E	ENST00000261937	NM_182925.4	743	gCg/gAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913384		P-0075245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	893	319	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740122	162740122	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1308	377	397	0	ENST00000367921.3:c.1324A>T	p.Thr442Ser	p.T442S	ENST00000367921	NM_006182.2	442	Aca/Tca																																																																															
BRCA1	672	MSKCC	GRCh37	17	41276043	41276043	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	108	344	0	ENST00000357654.3:c.71G>C	p.Cys24Ser	p.C24S	ENST00000357654	NM_007294.3	24	tGt/tCt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39542526	39542526	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1128	672	318	0	ENST00000262039.4:c.330A>G	p.Ile110Met	p.I110M	ENST00000262039	NM_002647.2	110	atA/atG																																																																															
TERT	7015	MSKCC	GRCh37	5	1294284	1294284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1265	370	356	0	ENST00000310581.5:c.717G>C	p.Arg239Ser	p.R239S	ENST00000310581	NM_198253.2	239	agG/agC																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638438	176638438	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0075245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	457	420	0	ENST00000439151.2:c.3038C>G	p.Ser1013Ter	p.S1013*	ENST00000439151	NM_022455.4	1013	tCa/tGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0075246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	50	318	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885299	111885299	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200936167		P-0075246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	31	291	0	ENST00000341259.2:c.1187C>T	p.Thr396Met	p.T396M	ENST00000341259	NM_005475.2	396	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0075246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	28	213	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140500186	140500186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	95	391	0	ENST00000288602.6:c.956C>T	p.Ser319Phe	p.S319F	ENST00000288602	NM_004333.4	319	tCc/tTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29652868	29652868	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	74	264	0	ENST00000358273.4:c.4866G>T	p.Leu1622Phe	p.L1622F	ENST00000358273	NM_001042492.2	1622	ttG/ttT																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156834561	156834561	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	105	368	0	ENST00000524377.1:c.329C>G	p.Ala110Gly	p.A110G	ENST00000524377	NM_002529.3	110	gCc/gGc																																																																															
MDM4	4194	MSKCC	GRCh37	1	204515939	204515939	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	66	351	1	ENST00000367182.3:c.842del	p.Asn281MetfsTer10	p.N281Mfs*10	ENST00000367182	NM_001278516.1	279	ggA/gg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106916	27106917	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	86	617	0	ENST00000324856.7:c.6532dup	p.Asp2178GlyfsTer47	p.D2178Gfs*47	ENST00000324856	NM_006015.4	2176	cag/caGg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	87	396	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307393	118307394	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	30	236	1	ENST00000534358.1:c.173dup	p.Ala59GlyfsTer88	p.A59Gfs*88	ENST00000534358	NM_005933.3	56	tcc/tCcc																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594883	47594883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780075355		P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			725	43	600	0	ENST00000395288.2:c.1156del	p.Glu386ArgfsTer27	p.E386Rfs*27	ENST00000395288	NM_016506.5	386	Gag/ag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426771	49426772	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs944680171		P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			711	81	648	0	ENST00000301067.7:c.11714_11716dup	p.Gln3905dup	p.Q3905dup	ENST00000301067	NM_003482.3	3905	ctg/cAGCtg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061725	38061726	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs766493600		P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	82	590	3	ENST00000250448.2:c.263dup	p.Ser89LeufsTer138	p.S89Lfs*138	ENST00000250448	NM_004496.3	88	ggc/ggGc																																																																															
CDH1	999	MSKCC	GRCh37	16	68846167	68846167	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs876660771		P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	78	421	1	ENST00000261769.5:c.1137+1G>A		p.X379_splice	ENST00000261769	NM_004360.3	379																																																																																
ANKRD11	29123	MSKCC	GRCh37	16	89346157	89346158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	13	579	1	ENST00000301030.4:c.6792dup	p.Ala2265ArgfsTer8	p.A2265Rfs*8	ENST00000301030	NM_001256183.1	2264	-/C																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	77	499	5	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453398	40453399	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs773909918		P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	62	520	0	ENST00000345506.4:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000345506	NM_003152.3	365	-/C																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117690	70117691	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	111	561	0	ENST00000245479.2:c.162dup	p.Lys55GlnfsTer197	p.K55Qfs*197	ENST00000245479	NM_000346.3	53	ttc/ttCc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216379	7216380	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1216832021		P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	113	522	0	ENST00000380728.2:c.868dup	p.Gln290ProfsTer?	p.Q290Pfs*?	ENST00000380728		290	cag/cCag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276860	15276861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs753725730		P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	70	612	1	ENST00000263388.2:c.5404dup	p.Ala1802GlyfsTer8	p.A1802Gfs*8	ENST00000263388	NM_000435.2	1802	gct/gGct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223001	36223002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	218	664	0	ENST00000222270.7:c.5636dup	p.Val1880CysfsTer92	p.V1880Cfs*92	ENST00000222270	NM_014727.1	1877	ttg/ttGg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21336680	21336681	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760808069		P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	75	526	2	ENST00000215739.8:c.27dup	p.Gln10AlafsTer24	p.Q10Afs*24	ENST00000215739	NM_006767.3	7	acg/acGg																																																																															
EP300	2033	MSKCC	GRCh37	22	41565524	41565524	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	74	348	0	ENST00000263253.7:c.4190A>G	p.Tyr1397Cys	p.Y1397C	ENST00000263253	NM_001429.3	1397	tAc/tGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	78	485	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103754	47103755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC	rs749901643		P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	98	545	0	ENST00000409792.3:c.6190_6191dup	p.Asp2064GlufsTer84	p.D2064Efs*84	ENST00000409792	NM_014159.6	2064	gac/gaGAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47158213	47158213	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	70	381	2	ENST00000409792.3:c.4486C>T	p.Arg1496Ter	p.R1496*	ENST00000409792	NM_014159.6	1496	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	78	447	0	ENST00000257430.4:c.3919dup	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874637	35874637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	69	421	2	ENST00000303115.3:c.799del	p.Arg267GlyfsTer28	p.R267Gfs*28	ENST00000303115	NM_002185.3	265	Aaa/aa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79966113	79966114	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	88	462	0	ENST00000265081.6:c.781dup	p.Glu261GlyfsTer43	p.E261Gfs*43	ENST00000265081	NM_002439.4	259	-/G																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099402	157099403	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAG	rs770869529		P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			793	59	645	2	ENST00000346085.5:c.360_362dup	p.Gln131dup	p.Q131dup	ENST00000346085	NM_020732.3	131	-/CAG																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324680	31324681	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	70	343	0	ENST00000412585.2:c.127dup	p.Glu43GlyfsTer56	p.E43Gfs*56	ENST00000412585	NM_005514.6	43	gag/gGag																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370709	55370709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	63	412	0	ENST00000297316.4:c.11C>T	p.Pro4Leu	p.P4L	ENST00000297316	NM_022454.3	4	cCg/cTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209616	98209617	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	46	509	0	ENST00000331920.6:c.3920_3921dup	p.Arg1308ProfsTer65	p.R1308Pfs*65	ENST00000331920	NM_000264.3	1307	-/CC																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123276978	123276978	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	69	488	0	ENST00000358487.5:c.940-1G>T		p.X314_splice	ENST00000358487	NM_000141.4	314																																																																																
PTEN	5728	MSKCC	GRCh37	10	89725053	89725053	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	11	254	0	ENST00000371953.3:c.1036T>C	p.Tyr346His	p.Y346H	ENST00000371953	NM_000314.4	346	Tac/Cac																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505377	125505378	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	37	335	1	ENST00000428830.2:c.675_676dup	p.Thr226LysfsTer15	p.T226Kfs*15	ENST00000428830	NM_001114121.2	223	gaa/gAAaa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972593	32972593	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	83	481	0	ENST00000380152.3:c.9943A>C	p.Lys3315Gln	p.K3315Q	ENST00000380152		3315	Aaa/Caa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355123	73355123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	150	407	0	ENST00000377767.4:c.247C>T	p.Pro83Ser	p.P83S	ENST00000377767	NM_014953.3	83	Cct/Tct																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78897468	78897468	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	95	524	0	ENST00000306801.3:c.2803G>T	p.Glu935Ter	p.E935*	ENST00000306801	NM_020761.2	935	Gag/Tag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10271081	10271081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	94	410	0	ENST00000340748.4:c.974G>A	p.Arg325His	p.R325H	ENST00000340748		325	cGc/cAc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15378290	15378290	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	55	449	0	ENST00000263377.2:c.496A>G	p.Thr166Ala	p.T166A	ENST00000263377	NM_058243.2	166	Aca/Gca																																																																															
BARD1	580	MSKCC	GRCh37	2	215645882	215645882	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	139	552	0	ENST00000260947.4:c.716T>C	p.Leu239Pro	p.L239P	ENST00000260947	NM_000465.2	239	cTg/cCg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225422494	225422494	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	138	356	0	ENST00000264414.4:c.146A>G	p.Asn49Ser	p.N49S	ENST00000264414	NM_003590.4	49	aAc/aGc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645700	12645700	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	93	484	0	ENST00000251849.4:c.769T>C	p.Ser257Pro	p.S257P	ENST00000251849	NM_002880.3	257	Tcg/Ccg																																																																															
APC	324	MSKCC	GRCh37	5	112175454	112175455	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	89	477	0	ENST00000257430.4:c.4165dup	p.Ser1389PhefsTer6	p.S1389Ffs*6	ENST00000257430	NM_000038.5	1388	act/acTt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131915040	131915040	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	65	338	0	ENST00000265335.6:c.397T>C	p.Cys133Arg	p.C133R	ENST00000265335		133	Tgt/Cgt																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997477	149997479	+	inframe_deletion	In_Frame_Del	DEL	CCA	CCA	-			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	80	390	0	ENST00000253339.5:c.2800_2802del	p.Trp934del	p.W934del	ENST00000253339		934	TGG/-																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910550	29911248	+	splice_donor_variant,splice_acceptor_variant,frameshift_variant,stop_lost,intron_variant	Splice_Site	DEL	GTATTTCTTCACATCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAGGATGGAGCCGCGGGCGCCGTGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCAGGAGACACGGAATGTGAAGGCCCAGTCACAGACTGACCGAGTGGACCTGGGGACCCTGCGCGGCTACTACAACCAGAGCGAGGCCGGTGAGTGACCCCGGCCGGGGGCGCAGGTCAGGACCCCTCATCCCCCACGGACGGGCCAGGTCGCCCACAGTCTCCGGGTCCGAGATCCACCCCGAAGCCGCGGGACCCCGAGACCCTTGCCCCGGGAGAGGCCCAGGCGCCTTTACCCGGTTTCATTTTCAGTTTAGGCCAAAAATCCCCCCGGGTTGGTCGGGGCTGGGCGGGGCTCGGGGGACTGGGCTGACCGCGGGGTCGGGGCCAGGTTCTCACACCATCCAGATAATGTATGGCTGCGACGTGGGGTCGGACGGGCGCTTCCTCCGCGGGTACCGGCAGGACGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCTTGGACCGCGGCGGACATGGCGGCTCAGATCACCAAGCGCAAGTGGGAGGCGGCCCATGAGGCGGAGCAGTTGAGAGCCT	GTATTTCTTCACATCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAGGATGGAGCCGCGGGCGCCGTGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCAGGAGACACGGAATGTGAAGGCCCAGTCACAGACTGACCGAGTGGACCTGGGGACCCTGCGCGGCTACTACAACCAGAGCGAGGCCGGTGAGTGACCCCGGCCGGGGGCGCAGGTCAGGACCCCTCATCCCCCACGGACGGGCCAGGTCGCCCACAGTCTCCGGGTCCGAGATCCACCCCGAAGCCGCGGGACCCCGAGACCCTTGCCCCGGGAGAGGCCCAGGCGCCTTTACCCGGTTTCATTTTCAGTTTAGGCCAAAAATCCCCCCGGGTTGGTCGGGGCTGGGCGGGGCTCGGGGGACTGGGCTGACCGCGGGGTCGGGGCCAGGTTCTCACACCATCCAGATAATGTATGGCTGCGACGTGGGGTCGGACGGGCGCTTCCTCCGCGGGTACCGGCAGGACGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCTTGGACCGCGGCGGACATGGCGGCTCAGATCACCAAGCGCAAGTGGGAGGCGGCCCATGAGGCGGAGCAGTTGAGAGCCT	-			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	51	433	0	ENST00000376809.5:c.90_547del		p.X30_splice	ENST00000376809	NM_002116.7	30	agGTATTTCTTCACATCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAGGATGGAGCCGCGGGCGCCGTGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCAGGAGACACGGAATGTGAAGGCCCAGTCACAGACTGACCGAGTGGACCTGGGGACCCTGCGCGGCTACTACAACCAGAGCGAGGCCGGTGAGTGACCCCGGCCGGGGGCGCAGGTCAGGACCCCTCATCCCCCACGGACGGGCCAGGTCGCCCACAGTCTCCGGGTCCGAGATCCACCCCGAAGCCGCGGGACCCCGAGACCCTTGCCCCGGGAGAGGCCCAGGCGCCTTTACCCGGTTTCATTTTCAGTTTAGGCCAAAAATCCCCCCGGGTTGGTCGGGGCTGGGCGGGGCTCGGGGGACTGGGCTGACCGCGGGGTCGGGGCCAGGTTCTCACACCATCCAGATAATGTATGGCTGCGACGTGGGGTCGGACGGGCGCTTCCTCCGCGGGTACCGGCAGGACGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCTTGGACCGCGGCGGACATGGCGGCTCAGATCACCAAGCGCAAGTGGGAGGCGGCCCATGAGGCGGAGCAGTTGAGAGCCTac/agac																																																																															
JAK2	3717	MSKCC	GRCh37	9	5077567	5077567	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781669824		P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	68	315	0	ENST00000381652.3:c.1979C>T	p.Ala660Val	p.A660V	ENST00000381652	NM_004972.3	660	gCc/gTc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98220450	98220450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	99	450	0	ENST00000331920.6:c.3013G>T	p.Gly1005Trp	p.G1005W	ENST00000331920	NM_000264.3	1005	Ggg/Tgg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53246401	53246401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075300-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	112	249	0	ENST00000375401.3:c.581G>A	p.Ser194Asn	p.S194N	ENST00000375401	NM_004187.3	194	aGc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0075326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	228	511	1	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0075326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	67	308	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																															
ATR	545	MSKCC	GRCh37	3	142185265	142185265	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	147	350	0	ENST00000350721.4:c.6798G>T	p.Met2266Ile	p.M2266I	ENST00000350721	NM_001184.3	2266	atG/atT																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797731	45797731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	162	534	0	ENST00000372115.3:c.919G>T	p.Gly307Trp	p.G307W	ENST00000372115	NM_001048171.1	307	Ggg/Tgg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411072	63411072	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	29	472	0	ENST00000330258.3:c.2095C>A	p.Arg699Ser	p.R699S	ENST00000330258	NM_152424.3	699	Cgt/Agt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	271	467	0	ENST00000375687.4:c.1927G>T	p.Gly643Trp	p.G643W	ENST00000375687	NM_015338.5	643	Ggg/Tgg																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230561508	230561508	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0075326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	48	508	0				ENST00000391860	NM_001258311.1																																																																																	
ERG	2078	MSKCC	GRCh37	21	39774515	39774515	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	202	365	1	ENST00000288319.7:c.637C>A	p.Gln213Lys	p.Q213K	ENST00000288319	NM_182918.3	213	Caa/Aaa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98218627	98218627	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	149	428	0	ENST00000331920.6:c.3237T>A	p.Ser1079Arg	p.S1079R	ENST00000331920	NM_000264.3	1079	agT/agA																																																																															
ARAF	369	MSKCC	GRCh37	X	47422686	47422686	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	33	429	0	ENST00000377045.4:c.158G>C	p.Gly53Ala	p.G53A	ENST00000377045	NM_001654.4	53	gGt/gCt																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936752	150936752	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	290	494	0	ENST00000271640.5:c.3788G>T	p.Trp1263Leu	p.W1263L	ENST00000271640	NM_001145415.1	1263	tGg/tTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514689	103514689	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	185	486	0	ENST00000355739.4:c.1190A>G	p.Asp397Gly	p.D397G	ENST00000355739	NM_000123.3	397	gAt/gGt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138431107	138431107	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	82	282	0	ENST00000289153.2:c.1342T>A	p.Phe448Ile	p.F448I	ENST00000289153	NM_006219.2	448	Ttt/Att																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396338	396338	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	166	497	0	ENST00000262320.3:c.688A>T	p.Thr230Ser	p.T230S	ENST00000262320	NM_003502.3	230	Aca/Tca																																																																															
NF1	4763	MSKCC	GRCh37	17	29559116	29559116	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	55	142	0	ENST00000358273.4:c.3223del	p.Ala1075GlnfsTer2	p.A1075Qfs*2	ENST00000358273	NM_001042492.2	1075	Gca/ca																																																																															
PREX2	80243	MSKCC	GRCh37	8	68982069	68982069	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0075326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	44	202	0	ENST00000288368.4:c.1444-1G>C		p.X482_splice	ENST00000288368	NM_024870.2	482																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602340	10602340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	294	499	0	ENST00000171111.5:c.1238G>T	p.Arg413Leu	p.R413L	ENST00000171111	NM_203500.1	413	cGt/cTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974678	21974678	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs587778189		P-0075328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	242	404	0	ENST00000304494.5:c.149A>G	p.Gln50Arg	p.Q50R	ENST00000304494	NM_000077.4	50	cAg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249044	55249044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	237	369	0	ENST00000275493.2:c.2342G>A	p.Cys781Tyr	p.C781Y	ENST00000275493	NM_005228.3	781	tGc/tAc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43738621	43738621	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	172	368	0	ENST00000382044.4:c.3004G>T	p.Glu1002Ter	p.E1002*	ENST00000382044	NM_001141980.1	1002	Gag/Tag																																																																															
PGR	5241	MSKCC	GRCh37	11	100999741	100999741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	86	358	1	ENST00000325455.5:c.61C>A	p.Pro21Thr	p.P21T	ENST00000325455	NM_001202474.3	21	Ccc/Acc																																																																															
PPARG	5468	MSKCC	GRCh37	3	12447401	12447401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	284	404	0	ENST00000287820.6:c.640C>T	p.Pro214Ser	p.P214S	ENST00000287820	NM_015869.4	214	Cca/Tca																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546655	9546655	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	262	366	0	ENST00000353224.5:c.1367G>T	p.Gly456Val	p.G456V	ENST00000353224	NM_177990.2	456	gGg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579317	7579318	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0075328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	222	372	0	ENST00000269305.4:c.369_370del	p.Cys124HisfsTer24	p.C124Hfs*24	ENST00000269305	NM_001126112.2	123	acTTgc/acgc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056638	26056638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	150	337	0	ENST00000343677.2:c.19G>T	p.Ala7Ser	p.A7S	ENST00000343677	NM_005319.3	7	Gcc/Tcc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40379645	40379645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	189	360	0	ENST00000293328.3:c.187G>A	p.Gly63Ser	p.G63S	ENST00000293328	NM_012448.3	63	Ggc/Agc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561553	9561553	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075328-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	208	397	0	ENST00000353224.5:c.229T>A	p.Cys77Ser	p.C77S	ENST00000353224	NM_177990.2	77	Tgc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0075330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	55	245	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562637	21562637	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758639228		P-0075330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	86	276	0	ENST00000382592.4:c.1282G>A	p.Ala428Thr	p.A428T	ENST00000382592	NM_014572.2	428	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0075330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	111	526	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231479	5231479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1377623190		P-0075330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	77	426	0	ENST00000357368.4:c.1997C>T	p.Pro666Leu	p.P666L	ENST00000357368	NM_002850.3	666	cCg/cTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0075330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	48	205	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0075330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	87	388	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175637	112175638	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	C			P-0075330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	91	459	0	ENST00000257430.4:c.4346_4347delinsC	p.Lys1449ThrfsTer24	p.K1449Tfs*24	ENST00000257430	NM_000038.5	1449	aAG/aC																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120203	70120204	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0075330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	126	515	0	ENST00000245479.2:c.1207_1208dup	p.Ser403ArgfsTer68	p.S403Rfs*68	ENST00000245479	NM_000346.3	402	ctg/ctGAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692790	89692790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075338-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			38	79	166	0	ENST00000371953.3:c.274G>T	p.Asp92Tyr	p.D92Y	ENST00000371953	NM_000314.4	92	Gac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075338-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	209	332	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075338-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	227	340	0	ENST00000269305.4:c.814del	p.Val272CysfsTer73	p.V272Cfs*73	ENST00000269305	NM_001126112.2	272	Gtg/tg																																																																															
SRC	6714	MSKCC	GRCh37	20	36031678	36031678	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs564099857		P-0075338-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	401	401	2	ENST00000358208.4:c.1507C>T	p.Arg503Trp	p.R503W	ENST00000358208		503	Cgg/Tgg																																																																															
MGA	23269	MSKCC	GRCh37	15	41961791	41961791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075338-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	87	317	0	ENST00000219905.7:c.699C>A	p.Phe233Leu	p.F233L	ENST00000219905	NM_001164273.1	233	ttC/ttA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0075338-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			50	100	228	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61305269	61305269	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144158243		P-0075338-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			20	13	96	0	ENST00000341074.5:c.857G>A	p.Arg286Gln	p.R286Q	ENST00000341074	NM_002974.2	286	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0075398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	100	340	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174357	112174358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	17	356	0	ENST00000257430.4:c.3067dup	p.Thr1023AsnfsTer6	p.T1023Nfs*6	ENST00000257430	NM_000038.5	1022	-/A																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0075398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	65	369	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145736899	145736899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370069034		P-0075398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	37	364	0	ENST00000428558.2:c.3542G>A	p.Arg1181Gln	p.R1181Q	ENST00000428558	NM_004260.3	1181	cGa/cAa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87317111	87317111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	19	333	0	ENST00000277120.3:c.250G>A	p.Glu84Lys	p.E84K	ENST00000277120		84	Gaa/Aaa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929491	44929491	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	92	187	0	ENST00000377967.4:c.2591G>T	p.Ser864Ile	p.S864I	ENST00000377967	NM_021140.2	864	aGc/aTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29556857	29556866	+	frameshift_variant	Frame_Shift_Del	DEL	TATTGACTGA	TATTGACTGA	-			P-0075398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	31	224	0	ENST00000358273.4:c.2857_2866del	p.Leu953ProfsTer6	p.L953Pfs*6	ENST00000358273	NM_001042492.2	952	tTATTGACTGAt/tt																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645693	12645693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	55	353	0	ENST00000251849.4:c.776C>A	p.Ser259Tyr	p.S259Y	ENST00000251849	NM_002880.3	259	tCc/tAc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175857	24175859	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0075399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	124	318	0	ENST00000263121.7:c.1091_1093del	p.Lys364del	p.K364del	ENST00000263121	NM_003073.3	362	gAGAag/gag																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0075399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	68	305	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
BCL2	596	MSKCC	GRCh37	18	60985747	60985749	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0075399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	89	312	0	ENST00000333681.4:c.151_153del	p.Ser51del	p.S51del	ENST00000333681		51	TCC/-																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99472819	99472819	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755569322		P-0075399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	61	279	0	ENST00000268035.6:c.2815G>A	p.Ala939Thr	p.A939T	ENST00000268035	NM_000875.3	939	Gct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	54	281	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873996	151873996	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	92	391	0	ENST00000262189.6:c.8542A>G	p.Asn2848Asp	p.N2848D	ENST00000262189	NM_170606.2	2848	Aat/Gat																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903747	114903748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GACAAATC			P-0075399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	115	304	0	ENST00000543371.1:c.752_759dup	p.Pro254AspfsTer7	p.P254Dfs*7	ENST00000543371	NM_001198531.1	251	gga/gGACAAATCga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589147	67589148	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0075399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	74	328	0	ENST00000274335.5:c.1136_1137del	p.Lys379IlefsTer15	p.K379Ifs*15	ENST00000274335		379	AAa/a																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933230	36933230	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	88	360	0	ENST00000361632.4:c.1887C>G	p.Ile629Met	p.I629M	ENST00000361632		629	atC/atG																																																																															
APC	324	MSKCC	GRCh37	5	112175173	112175174	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0075399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	66	378	0	ENST00000257430.4:c.3882_3883delinsTT	p.Gln1294_Glu1295delinsHisTer	p.Q1294_E1295delinsH*	ENST00000257430	NM_000038.5	1294	caGGaa/caTTaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280693	41280693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	107	359	0	ENST00000349496.5:c.2206G>A	p.Glu736Lys	p.E736K	ENST00000349496	NM_001904.3	736	Gaa/Aaa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589211	67589567	+	splice_donor_variant,splice_acceptor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	CTGTGGTTGAATTAATAAACCACTACCGGAATGAATCTCTAGCTCAGTATAATCCCAAATTGGATGTGAAATTACTTTATCCAGTATCCAAATACCAACAGGTAATAAAAACTGAATGAATTATCCAGTTACGATGTTTAGACAAGATCCTTTTAATACTTAGAAAACATTTGAAGCAGATGAATTACATGTAATCAAGTCTAAAAAACTTGACACTCGTAATTACATAATTGCAATTTTAAAGATGTTTCCATGTCAGCTATTTTGTTAAACAATTGTTATTTGATTAAATACCTTATCCATTGAATTTATTTTAATCTTTCTAGGATCAAGTTGTCAAAGAAGATAATATTGAAG	CTGTGGTTGAATTAATAAACCACTACCGGAATGAATCTCTAGCTCAGTATAATCCCAAATTGGATGTGAAATTACTTTATCCAGTATCCAAATACCAACAGGTAATAAAAACTGAATGAATTATCCAGTTACGATGTTTAGACAAGATCCTTTTAATACTTAGAAAACATTTGAAGCAGATGAATTACATGTAATCAAGTCTAAAAAACTTGACACTCGTAATTACATAATTGCAATTTTAAAGATGTTTCCATGTCAGCTATTTTGTTAAACAATTGTTATTTGATTAAATACCTTATCCATTGAATTTATTTTAATCTTTCTAGGATCAAGTTGTCAAAGAAGATAATATTGAAG	-			P-0075422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	104	403	0	ENST00000274335.5:c.1203_1334del		p.X401_splice	ENST00000274335		401	tCTGTGGTTGAATTAATAAACCACTACCGGAATGAATCTCTAGCTCAGTATAATCCCAAATTGGATGTGAAATTACTTTATCCAGTATCCAAATACCAACAGGTAATAAAAACTGAATGAATTATCCAGTTACGATGTTTAGACAAGATCCTTTTAATACTTAGAAAACATTTGAAGCAGATGAATTACATGTAATCAAGTCTAAAAAACTTGACACTCGTAATTACATAATTGCAATTTTAAAGATGTTTCCATGTCAGCTATTTTGTTAAACAATTGTTATTTGATTAAATACCTTATCCATTGAATTTATTTTAATCTTTCTAGGATCAAGTTGTCAAAGAAGATAATATTGAAGct/tct																																																																															
ATR	545	MSKCC	GRCh37	3	142185166	142185166	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0075422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	54	293	0	ENST00000350721.4:c.6897G>A	p.Met2299Ile	p.M2299I	ENST00000350721	NM_001184.3	2299	atG/atA																																																																															
SOS1	6654	MSKCC	GRCh37	2	39249965	39249965	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	32	427	0	ENST00000402219.2:c.1604del	p.Asn535ThrfsTer7	p.N535Tfs*7	ENST00000402219	NM_005633.3	535	aAc/ac																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33689864	33689864	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	24	499	0	ENST00000308377.4:c.963C>A	p.Cys321Ter	p.C321*	ENST00000308377	NM_152270.3	321	tgC/tgA																																																																															
RRAS	6237	MSKCC	GRCh37	19	50138912	50138912	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	89	601	0	ENST00000246792.3:c.578A>T	p.Tyr193Phe	p.Y193F	ENST00000246792	NM_006270.3	193	tAc/tTc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495685	56495685	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	30	513	0	ENST00000267101.3:c.3875T>C	p.Met1292Thr	p.M1292T	ENST00000267101	NM_001982.3	1292	aTg/aCg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962387	2962387	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	24	434	0	ENST00000396946.4:c.2150G>C	p.Gly717Ala	p.G717A	ENST00000396946	NM_032415.4	717	gGc/gCc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68982099	68982108	+	frameshift_variant	Frame_Shift_Del	DEL	CCTTTTTACT	CCTTTTTACT	-			P-0075422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	16	245	0	ENST00000288368.4:c.1475_1484del	p.Leu492GlnfsTer2	p.L492Qfs*2	ENST00000288368	NM_024870.2	491	agCCTTTTTACT/ag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643454	52643456	+	frameshift_variant	Frame_Shift_Ins	INS	AAA	AAA	GTGGTTT			P-0075422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	71	455	0	ENST00000394830.3:c.2440_2442delinsAAACCAC	p.Phe814LysfsTer4	p.F814Kfs*4	ENST00000394830	NM_018313.4	814	TTT/AAACCAC																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33689850	33689852	+	missense_variant	Missense_Mutation	ONP	GAG	GAG	AAT			P-0075422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	23	515	0	ENST00000308377.4:c.975_977delinsATT	p.Phe325_Ser326delinsLeuLeu	p.F325_S326delinsLL	ENST00000308377	NM_152270.3	325	ttCTCa/ttATTa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61726980	61726980	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	47	287	0	ENST00000401558.2:c.458T>C	p.Ile153Thr	p.I153T	ENST00000401558	NM_003400.3	153	aTt/aCt																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495639	72495645	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TCAAGTA	TCAAGTA	-			P-0075424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	46	334	0	ENST00000477973.2:c.423+2_423+8del		p.X141_splice	ENST00000477973	NM_012234.5	141																																																																																
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057520006		P-0075441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	178	458	0	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480345	89480345	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs774448099		P-0075441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	83	379	0	ENST00000336596.2:c.2182C>T	p.Arg728Ter	p.R728*	ENST00000336596	NM_005233.5	728	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858337	9858337	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs560057284		P-0075441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	110	490	0	ENST00000330684.3:c.3064C>T	p.Arg1022Cys	p.R1022C	ENST00000330684	NM_001134407.1	1022	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112173602	112173602	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	184	384	0	ENST00000257430.4:c.2311G>T	p.Glu771Ter	p.E771*	ENST00000257430	NM_000038.5	771	Gaa/Taa																																																																															
EZH1	2145	MSKCC	GRCh37	17	40854558	40854558	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs532006849		P-0075441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	86	446	0	ENST00000428826.2:c.2236G>A	p.Val746Ile	p.V746I	ENST00000428826		746	Gtc/Atc																																																																															
NF1	4763	MSKCC	GRCh37	17	29654757	29654757	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771597781		P-0075441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	116	500	0	ENST00000358273.4:c.5509G>A	p.Asp1837Asn	p.D1837N	ENST00000358273	NM_001042492.2	1837	Gac/Aac																																																																															
APC	324	MSKCC	GRCh37	5	112175580	112175580	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	101	549	0	ENST00000257430.4:c.4290del	p.Met1431CysfsTer42	p.M1431Cfs*42	ENST00000257430	NM_000038.5	1430	aCc/ac																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38274879	38274879	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	110	418	0	ENST00000425967.3:c.1701G>C	p.Lys567Asn	p.K567N	ENST00000425967	NM_001174067.1	567	aaG/aaC																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67196017	67196017	+	start_lost	Translation_Start_Site	SNP	A	A	C			P-0075441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	16	209	2	ENST00000312629.5:c.1A>C	p.Met1?	p.M1?	ENST00000312629	NM_003952.2	1	Atg/Ctg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844417	156844417	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0075444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1344	234	704	0	ENST00000524377.1:c.1250G>T	p.Gly417Val	p.G417V	ENST00000524377	NM_002529.3	417	gGg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0075446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	306	382	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			58	219	274	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139818324	139818324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1363427887		P-0075446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	235	295	0	ENST00000247668.2:c.1159G>A	p.Gly387Ser	p.G387S	ENST00000247668	NM_021138.3	387	Ggc/Agc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23619279	23619279	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	310	347	0	ENST00000261584.4:c.3256del	p.Arg1086GlufsTer9	p.R1086Efs*9	ENST00000261584	NM_024675.3	1086	Cga/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0075448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	277	548	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916174	9916174	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	220	462	0	ENST00000330684.3:c.2115G>T	p.Met705Ile	p.M705I	ENST00000330684	NM_001134407.1	705	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0075449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	123	525	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637689	52637689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	79	377	0	ENST00000394830.3:c.2627G>A	p.Arg876His	p.R876H	ENST00000394830	NM_018313.4	876	cGt/cAt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88678927	88678927	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0075449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	86	341	0	ENST00000372037.3:c.869-2A>T		p.X290_splice	ENST00000372037	NM_004329.2	290																																																																																
ATR	545	MSKCC	GRCh37	3	142259824	142259824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	32	441	0	ENST00000350721.4:c.3503G>A	p.Ser1168Asn	p.S1168N	ENST00000350721	NM_001184.3	1168	aGt/aAt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589610	67589611	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAAAAGTCGAGAATATGATAGATTATATGAAGAATATAC			P-0075449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	16	340	0	ENST00000274335.5:c.1374_1412dup	p.Lys459_Thr471dup	p.K459_T471dup	ENST00000274335		459	gaa/gaAAAAAGTCGAGAATATGATAGATTATATGAAGAATATACa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0075477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	35	322	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32181030	32181030	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0075477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	37	270	0	ENST00000375023.3:c.2321-1G>A		p.X774_splice	ENST00000375023	NM_004557.3	774																																																																																
MED12	9968	MSKCC	GRCh37	X	70349541	70349541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	43	212	0	ENST00000374080.3:c.3703C>A	p.Leu1235Met	p.L1235M	ENST00000374080		1235	Ctg/Atg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060728	38060752	+	frameshift_variant	Frame_Shift_Del	DEL	CGTATGCCTTGAAGTCCAGCTTATG	CGTATGCCTTGAAGTCCAGCTTATG	-			P-0075477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	46	526	0	ENST00000250448.2:c.1237_1261del	p.His413AsnfsTer19	p.H413Nfs*19	ENST00000250448	NM_004496.3	413	CATAAGCTGGACTTCAAGGCATACGaa/aa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879244	151879244	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	22	400	0	ENST00000262189.6:c.5701del	p.Met1901TrpfsTer38	p.M1901Wfs*38	ENST00000262189	NM_170606.2	1901	Atg/tg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851663	63851663	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0075477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	27	429	0	ENST00000279873.7:c.2441T>G	p.Leu814Ter	p.L814*	ENST00000279873	NM_032199.2	814	tTa/tGa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372287	55372288	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1170462661		P-0075480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	57	201	0	ENST00000297316.4:c.983dup	p.Gly331ArgfsTer34	p.G331Rfs*34	ENST00000297316	NM_022454.3	326	cac/caCc																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128420046	128420047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0075480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	61	183	0	ENST00000265960.3:c.381dup	p.Ser128IlefsTer28	p.S128Ifs*28	ENST00000265960	NM_001006617.1	127	-/A																																																																															
TET2	54790	MSKCC	GRCh37	4	106156565	106156565	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	117	273	0	ENST00000380013.4:c.1466A>G	p.Asp489Gly	p.D489G	ENST00000380013	NM_001127208.2	489	gAc/gGc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162622267	162622267	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	58	245	0	ENST00000366898.1:c.430A>T	p.Asn144Tyr	p.N144Y	ENST00000366898	NM_004562.2	144	Aac/Tac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061329	38061329	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	202	164	0	ENST00000250448.2:c.660C>G	p.His220Gln	p.H220Q	ENST00000250448	NM_004496.3	220	caC/caG																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061124	38061175	+	frameshift_variant	Frame_Shift_Del	DEL	CCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGG	CCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGG	-			P-0075480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	200	165	0	ENST00000250448.2:c.814_865del	p.Pro272AlafsTer32	p.P272Afs*32	ENST00000250448	NM_004496.3	272	CCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGgc/gc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067153	37067153	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	45	216	0	ENST00000231790.2:c.1064C>A	p.Pro355His	p.P355H	ENST00000231790	NM_000249.3	355	cCc/cAc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12006401	12006401	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			788	108	462	0	ENST00000396373.4:c.369G>C	p.Gln123His	p.Q123H	ENST00000396373	NM_001987.4	123	caG/caC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0075562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	175	359	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
KLF5	688	MSKCC	GRCh37	13	73636638	73636638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	396	566	0	ENST00000377687.4:c.901C>T	p.Pro301Ser	p.P301S	ENST00000377687	NM_001730.3	301	Ccc/Tcc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500573	99500573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	187	515	0	ENST00000268035.6:c.4006C>T	p.Leu1336Phe	p.L1336F	ENST00000268035	NM_000875.3	1336	Ctc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934578		P-0075562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	301	526	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0075562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	106	186	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0075562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	192	285	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0075562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	104	504	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
EZH2	2146	MSKCC	GRCh37	7	148511172	148511172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	521	404	0	ENST00000320356.2:c.1730C>T	p.Pro577Leu	p.P577L	ENST00000320356	NM_004456.4	577	cCg/cTg																																																																															
KLF5	688	MSKCC	GRCh37	13	73636602	73636602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			742	386	562	0	ENST00000377687.4:c.865C>A	p.Pro289Thr	p.P289T	ENST00000377687	NM_001730.3	289	Cca/Aca																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023334	33023334	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	297	513	0	ENST00000300177.4:c.443A>C	p.Lys148Thr	p.K148T	ENST00000300177	NM_001191322.1	148	aAa/aCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0075563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	18	130	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0075563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	128	331	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164342	47164342	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0075563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	33	263	0	ENST00000409792.3:c.1784C>G	p.Ser595Ter	p.S595*	ENST00000409792	NM_014159.6	595	tCa/tGa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298695	15298695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	35	271	0	ENST00000263388.2:c.1603G>A	p.Glu535Lys	p.E535K	ENST00000263388	NM_000435.2	535	Gag/Aag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967345	134967345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	54	276	0	ENST00000398015.3:c.2684C>T	p.Thr895Ile	p.T895I	ENST00000398015	NM_004441.4	895	aCc/aTc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659875	227659875	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	31	249	0	ENST00000305123.5:c.3580G>T	p.Glu1194Ter	p.E1194*	ENST00000305123	NM_005544.2	1194	Gag/Tag																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246493823	246493823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	27	182	0	ENST00000388985.4:c.353C>T	p.Ser118Leu	p.S118L	ENST00000388985		118	tCa/tTa																																																																															
APC	324	MSKCC	GRCh37	5	112175704	112175707	+	frameshift_variant	Frame_Shift_Del	DEL	AGTA	AGTA	-			P-0075563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	107	318	0	ENST00000257430.4:c.4414_4417del	p.Val1472MetfsTer34	p.V1472Mfs*34	ENST00000257430	NM_000038.5	1471	gcAGTA/gc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55231475	55231475	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	50	242	0	ENST00000275493.2:c.1681G>C	p.Glu561Gln	p.E561Q	ENST00000275493	NM_005228.3	561	Gag/Cag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223610	53223610	+	stop_gained	Nonsense_Mutation	SNP	G	G	C	rs782454131		P-0075563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	44	307	0	ENST00000375401.3:c.3749C>G	p.Ser1250Ter	p.S1250*	ENST00000375401	NM_004187.3	1250	tCa/tGa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2213604	2213604	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	47	253	0	ENST00000398665.3:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000398665	NM_032482.2	542	Gag/Cag																																																																															
DICER1	23405	MSKCC	GRCh37	14	95577722	95577722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	48	217	0	ENST00000343455.3:c.2188G>A	p.Asp730Asn	p.D730N	ENST00000343455	NM_177438.2	730	Gat/Aat																																																																															
RXRA	6256	MSKCC	GRCh37	9	137293648	137293648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	42	320	0	ENST00000481739.1:c.199G>T	p.Val67Phe	p.V67F	ENST00000481739	NM_002957.4	67	Gtc/Ttc																																																																															
MGA	23269	MSKCC	GRCh37	15	42028485	42028485	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	55	269	0	ENST00000219905.7:c.4023C>A	p.Asp1341Glu	p.D1341E	ENST00000219905	NM_001164273.1	1341	gaC/gaA																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499763	8499763	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745717615		P-0075569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	79	322	0	ENST00000356435.5:c.2206G>A	p.Val736Met	p.V736M	ENST00000356435		736	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882025		P-0075569-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	192	373	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577555	7577555	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	94	355	0	ENST00000269305.4:c.726C>A	p.Cys242Ter	p.C242*	ENST00000269305	NM_001126112.2	242	tgC/tgA																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389233	8389233	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0075570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	32	288	0	ENST00000356435.5:c.4385G>A	p.Arg1462Lys	p.R1462K	ENST00000356435		1462	aGg/aAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	87	247	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47599217	47599217	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	112	397	0	ENST00000395288.2:c.335C>A	p.Ala112Asp	p.A112D	ENST00000395288	NM_016506.5	112	gCt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0074436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	169	502	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984672	11984672	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0074436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			41	113	308	0	ENST00000353533.5:c.219-1G>C		p.X73_splice	ENST00000353533	NM_003010.3	73																																																																																
ROS1	6098	MSKCC	GRCh37	6	117678043	117678043	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	26	399	0	ENST00000368508.3:c.3890A>T	p.Tyr1297Phe	p.Y1297F	ENST00000368508	NM_002944.2	1297	tAc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0074441-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			350	32	231	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0074726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	347	641	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604736	48604736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0074726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	163	642	0	ENST00000342988.3:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000342988	NM_005359.5	520	Gaa/Taa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47129662	47129662	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057523157		P-0074726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	129	561	0	ENST00000409792.3:c.5218C>T	p.Arg1740Trp	p.R1740W	ENST00000409792	NM_014159.6	1740	Cgg/Tgg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68934284	68934284	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146218789		P-0074726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	79	420	0	ENST00000288368.4:c.350G>A	p.Arg117His	p.R117H	ENST00000288368	NM_024870.2	117	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0074726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	193	353	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105554	27105554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	312	640	0	ENST00000324856.7:c.5165G>T	p.Arg1722Leu	p.R1722L	ENST00000324856	NM_006015.4	1722	cGa/cTa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534388	63534394	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCTCG	AGCCTCG	-			P-0074726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	288	671	0	ENST00000307078.5:c.1127_1133del	p.Ser376TrpfsTer4	p.S376Wfs*4	ENST00000307078	NM_004655.3	376	tCGAGGCTg/tg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448285	56448285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	383	665	0	ENST00000407977.2:c.362C>T	p.Ser121Leu	p.S121L	ENST00000407977		121	tCa/tTa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597459	10597459	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0074803-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			14	7	0	0	ENST00000171111.5:c.1744G>T	p.Glu582Ter	p.E582*	ENST00000171111	NM_203500.1	582	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0075164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			61	337	367	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112174799	112174799	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0075164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			67	327	385	0	ENST00000257430.4:c.3510del	p.Lys1170AsnfsTer12	p.K1170Nfs*12	ENST00000257430	NM_000038.5	1170	Aaa/aa																																																																															
MGA	23269	MSKCC	GRCh37	15	42057125	42057125	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	116	548	2	ENST00000219905.7:c.7786C>A	p.Leu2596Ile	p.L2596I	ENST00000219905	NM_001164273.1	2596	Ctt/Att																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0075297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	261	635	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1060501201		P-0075297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	74	427	0	ENST00000269305.4:c.773A>G	p.Glu258Gly	p.E258G	ENST00000269305	NM_001126112.2	258	gAa/gGa																																																																															
APC	324	MSKCC	GRCh37	5	112162945	112162946	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0075297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	39	374	0	ENST00000257430.4:c.1548+2dup		p.X516_splice	ENST00000257430	NM_000038.5	516																																																																																
APC	324	MSKCC	GRCh37	5	112162896	112162896	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0075297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	102	400	0	ENST00000257430.4:c.1500T>G	p.Tyr500Ter	p.Y500*	ENST00000257430	NM_000038.5	500	taT/taG																																																																															
SESN1	27244	MSKCC	GRCh37	6	109415237	109415238	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0075297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	91	464	0	ENST00000436639.2:c.39_40del	p.Cys14GlnfsTer7	p.C14Qfs*7	ENST00000436639	NM_014454.2	13	ctCTgc/ctgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884560	151884560	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0075297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	26	372	0	ENST00000262189.6:c.4795G>C	p.Asp1599His	p.D1599H	ENST00000262189	NM_170606.2	1599	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0075298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	441	500	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736277	243736277	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs764214500		P-0075298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			951	146	383	0	ENST00000263826.5:c.770C>G	p.Ser257Cys	p.S257C	ENST00000263826	NM_005465.4	257	tCt/tGt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522422	157522422	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs367764610		P-0075298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	190	507	0	ENST00000346085.5:c.4694A>G	p.Asn1565Ser	p.N1565S	ENST00000346085	NM_020732.3	1565	aAc/aGc																																																																															
ABL1	25	MSKCC	GRCh37	9	133748275	133748275	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0075298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	321	407	0	ENST00000318560.5:c.936T>G	p.Tyr312Ter	p.Y312*	ENST00000318560	NM_005157.4	312	taT/taG																																																																															
NF2	4771	MSKCC	GRCh37	22	30069429	30069429	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	512	472	0	ENST00000338641.4:c.1294G>C	p.Glu432Gln	p.E432Q	ENST00000338641	NM_000268.3	432	Gaa/Caa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679653	30679653	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0075298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	202	523	0	ENST00000376406.3:c.2066G>C	p.Gly689Ala	p.G689A	ENST00000376406	NM_014641.2	689	gGt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0075301-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			78	158	268	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578220	7578221	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0075301-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	324	634	0	ENST00000269305.4:c.628_629del	p.Asn210HisfsTer5	p.N210Hfs*5	ENST00000269305	NM_001126112.2	210	AAc/c																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0075301-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	52	332	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
MED12	9968	MSKCC	GRCh37	X	70351455	70351455	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075301-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	235	447	0	ENST00000374080.3:c.4103A>G	p.Lys1368Arg	p.K1368R	ENST00000374080		1368	aAg/aGg																																																																															
ALK	238	MSKCC	GRCh37	2	29416301	29416301	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200425614		P-0075301-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	119	561	0	ENST00000389048.3:c.4652C>T	p.Pro1551Leu	p.P1551L	ENST00000389048	NM_004304.4	1551	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0075309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	341	531	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0075309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	192	306	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112155042	112155042	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs863225310		P-0075309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			43	329	306	0	ENST00000257430.4:c.1312+1G>A		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
BLM	641	MSKCC	GRCh37	15	91346897	91346897	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777492549		P-0075309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	190	381	0	ENST00000355112.3:c.3505G>A	p.Ala1169Thr	p.A1169T	ENST00000355112	NM_000057.2	1169	Gct/Act																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710517	114710517	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0075309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	312	363	0	ENST00000543371.1:c.2T>C	p.Met1?	p.M1?	ENST00000543371	NM_001198531.1	1	aTg/aCg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38314897	38314897	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143341876		P-0075309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	164	283	0	ENST00000425967.3:c.167C>T	p.Pro56Leu	p.P56L	ENST00000425967	NM_001174067.1	56	cCg/cTg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279983	18279983	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	391	328	0	ENST00000222254.8:c.2066T>A	p.Leu689Gln	p.L689Q	ENST00000222254	NM_005027.3	689	cTg/cAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16068445	16068445	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	17	76	0	ENST00000268712.3:c.466C>A	p.Pro156Thr	p.P156T	ENST00000268712	NM_006311.3	156	Cca/Aca																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285944	38285944	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1169416110		P-0075350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	66	411	0	ENST00000425967.3:c.467C>T	p.Pro156Leu	p.P156L	ENST00000425967	NM_001174067.1	156	cCc/cTc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426749	47426749	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	195	505	0	ENST00000377045.4:c.994G>T	p.Asp332Tyr	p.D332Y	ENST00000377045	NM_001654.4	332	Gat/Tat																																																																															
WT1	7490	MSKCC	GRCh37	11	32456560	32456560	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	66	276	0	ENST00000332351.3:c.332del	p.Pro111ArgfsTer47	p.P111Rfs*47	ENST00000332351	NM_024426.4	111	cCg/cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0075350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	105	269	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ALK	238	MSKCC	GRCh37	2	29451845	29451845	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	89	255	0	ENST00000389048.3:c.2720C>G	p.Pro907Arg	p.P907R	ENST00000389048	NM_004304.4	907	cCc/cGc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112892440	112892440	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	108	287	0	ENST00000351677.2:c.598A>T	p.Asn200Tyr	p.N200Y	ENST00000351677	NM_002834.3	200	Aat/Tat																																																																															
ATRX	546	MSKCC	GRCh37	X	76814208	76814208	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	120	323	0	ENST00000373344.5:c.6436C>A	p.Gln2146Lys	p.Q2146K	ENST00000373344	NM_000489.3	2146	Cag/Aag																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867040	45867040	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	194	428	0	ENST00000391945.4:c.1079G>T	p.Gly360Val	p.G360V	ENST00000391945	NM_000400.3	360	gGc/gTc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287505	46287505	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0075350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	97	285	0	ENST00000334344.6:c.5363+1G>T		p.X1788_splice	ENST00000334344	NM_152641.2	1788																																																																																
RAD50	10111	MSKCC	GRCh37	5	131976496	131976496	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0075350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	154	401	0	ENST00000265335.6:c.3751G>A	p.Glu1251Lys	p.E1251K	ENST00000265335		1251	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255919	16255919	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	173	419	0	ENST00000375759.3:c.3184A>T	p.Ser1062Cys	p.S1062C	ENST00000375759	NM_015001.2	1062	Agc/Tgc																																																																															
BARD1	580	MSKCC	GRCh37	2	215610477	215610477	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	114	332	0	ENST00000260947.4:c.1779G>T	p.Lys593Asn	p.K593N	ENST00000260947	NM_000465.2	593	aaG/aaT																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966547	36966547	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0075350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	144	368	0	ENST00000358127.4:c.779A>T	p.Gln260Leu	p.Q260L	ENST00000358127	NM_001280556.1	260	cAg/cTg																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230561397	230561397	+	5_prime_UTR_variant	5'UTR	SNP	C	C	T			P-0075350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	360	578	0	ENST00000391860.1:c.-68G>A		p.*23*	ENST00000391860	NM_001258311.1																																																																																	
XIAP	331	MSKCC	GRCh37	X	123020273	123020273	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	145	369	0	ENST00000355640.3:c.761C>A	p.Thr254Lys	p.T254K	ENST00000355640		254	aCa/aAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0075351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	84	471	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0075351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	138	523	1	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133254004	133254004	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1331349861		P-0075351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	37	423	0	ENST00000320574.5:c.746G>A	p.Arg249Gln	p.R249Q	ENST00000320574	NM_006231.2	249	cGa/cAa																																																																															
HGF	3082	MSKCC	GRCh37	7	81355280	81355280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	114	407	0	ENST00000222390.5:c.1094G>A	p.Cys365Tyr	p.C365Y	ENST00000222390	NM_000601.4	365	tGt/tAt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120376	94120377	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	CT			P-0075351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	273	509	0	ENST00000369303.4:c.674_675delinsAG	p.Ser225Ter	p.S225*	ENST00000369303	NM_004440.3	225	tCC/tAG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916957	178916957	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200018596		P-0072989-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			209	55	235	0	ENST00000263967.3:c.344G>T	p.Arg115Leu	p.R115L	ENST00000263967	NM_006218.2	115	cGa/cTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28929495		P-0072989-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			374	62	324	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0072989-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			434	69	329	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
BTK	695	MSKCC	GRCh37	X	100613608	100613608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072989-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			445	66	310	0	ENST00000308731.7:c.971C>A	p.Thr324Lys	p.T324K	ENST00000308731	NM_000061.2	324	aCa/aAa																																																																															
RET	5979	MSKCC	GRCh37	10	43615578	43615578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072989-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			425	42	348	0	ENST00000355710.3:c.2657G>T	p.Arg886Leu	p.R886L	ENST00000355710	NM_020975.4	886	cGg/cTg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426732	47426732	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072989-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			411	54	351	1	ENST00000377045.4:c.977G>C	p.Arg326Pro	p.R326P	ENST00000377045	NM_001654.4	326	cGa/cCa																																																																															
ABL1	25	MSKCC	GRCh37	9	133759691	133759691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072989-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			350	79	304	1	ENST00000318560.5:c.2014G>T	p.Ala672Ser	p.A672S	ENST00000318560	NM_005157.4	672	Gcc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0075179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	44	358	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581197	48581203	+	frameshift_variant	Frame_Shift_Del	DEL	GGGACAG	GGGACAG	-			P-0075179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	59	488	0	ENST00000342988.3:c.501_507del	p.Glu167AspfsTer33	p.E167Dfs*33	ENST00000342988	NM_005359.5	167	gaGGGACAG/ga																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981480	63981480	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	96	636	2	ENST00000295900.6:c.1982C>G	p.Ser661Trp	p.S661W	ENST00000295900	NM_000333.3	661	tCg/tGg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38959422	38959422	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0075179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	61	371	0	ENST00000357387.3:c.2053C>A	p.Leu685Ile	p.L685I	ENST00000357387	NM_152756.3	685	Ctc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0075182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	196	564	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935569	13935570	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0075182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	181	484	0	ENST00000405192.2:c.1286dup	p.His429GlnfsTer3	p.H429Qfs*3	ENST00000405192	NM_001163147.1	429	cac/caAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0075184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	424	524	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	173	465	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112111408	112111411	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0075184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	100	236	0	ENST00000257430.4:c.509_512del	p.Asp170ValfsTer4	p.D170Vfs*4	ENST00000257430	NM_000038.5	169	ATAGat/at																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106861	27106861	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	226	532	0	ENST00000324856.7:c.6472C>T	p.Arg2158Ter	p.R2158*	ENST00000324856	NM_006015.4	2158	Cga/Tga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	402224	402225	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0075184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	206	499	0	ENST00000399788.2:c.4566_4567del	p.Lys1523ValfsTer11	p.K1523Vfs*11	ENST00000399788	NM_001042603.1	1522	caGAag/caag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097629	27097629	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	204	407	0	ENST00000324856.7:c.3218G>A	p.Trp1073Ter	p.W1073*	ENST00000324856	NM_006015.4	1073	tGg/tAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391907	139391907	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756874994		P-0075184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	197	554	1	ENST00000277541.6:c.6284G>A	p.Arg2095His	p.R2095H	ENST00000277541	NM_017617.3	2095	cGc/cAc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680751	30680751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	263	478	0	ENST00000376406.3:c.968C>T	p.Pro323Leu	p.P323L	ENST00000376406	NM_014641.2	323	cCt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0075184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	238	289	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410775	63410775	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	356	496	0	ENST00000330258.3:c.2392C>T	p.Gln798Ter	p.Q798*	ENST00000330258	NM_152424.3	798	Caa/Taa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123247569	123247569	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519047		P-0075230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	29	321	0	ENST00000358487.5:c.1922A>G	p.Lys641Arg	p.K641R	ENST00000358487	NM_000141.4	641	aAa/aGa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528900	157528900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	40	331	0	ENST00000346085.5:c.6625G>C	p.Asp2209His	p.D2209H	ENST00000346085	NM_020732.3	2209	Gac/Cac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151948024	151948024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	24	244	0	ENST00000262189.6:c.1649G>T	p.Gly550Val	p.G550V	ENST00000262189	NM_170606.2	550	gGc/gTc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120529611	120529611	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0075230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	41	360	0	ENST00000256646.2:c.846C>G	p.Tyr282Ter	p.Y282*	ENST00000256646	NM_024408.3	282	taC/taG																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098935	178098935	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	35	340	0	ENST00000397062.3:c.110T>G	p.Phe37Cys	p.F37C	ENST00000397062	NM_006164.4	37	tTt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0075232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	146	318	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	77	307	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16012220	16012220	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	174	265	0	ENST00000268712.3:c.2062C>T	p.Arg688Ter	p.R688*	ENST00000268712	NM_006311.3	688	Cga/Tga																																																																															
CASP8	841	MSKCC	GRCh37	2	202136343	202136345	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TGG	TGG	-			P-0075232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	68	256	0	ENST00000358485.4:c.588_588+2del		p.X196_splice	ENST00000358485	NM_001080125.1	196																																																																																
DNMT3B	1789	MSKCC	GRCh37	20	31388728	31388728	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	65	341	0	ENST00000328111.2:c.1993T>C	p.Tyr665His	p.Y665H	ENST00000328111	NM_006892.3	665	Tat/Cat																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987369	2987369	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	115	311	0	ENST00000396946.4:c.60C>A	p.Asp20Glu	p.D20E	ENST00000396946	NM_032415.4	20	gaC/gaA																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0075268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	21	306	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	31	260	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
RB1	5925	MSKCC	GRCh37	13	49050886	49050886	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144668210		P-0075268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	20	241	0	ENST00000267163.4:c.2570G>A	p.Arg857His	p.R857H	ENST00000267163	NM_000321.2	857	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578374	7578374	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	85	400	0	ENST00000269305.4:c.556del	p.Asp186MetfsTer61	p.D186Mfs*61	ENST00000269305	NM_001126112.2	186	Gat/at																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679613	33679613	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	26	335	0	ENST00000308377.4:c.2468A>C	p.Lys823Thr	p.K823T	ENST00000308377	NM_152270.3	823	aAg/aCg																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374765	149374765	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	31	253	0	ENST00000360632.3:c.329A>T	p.His110Leu	p.H110L	ENST00000360632	NM_015472.4	110	cAc/cTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178947827	178947827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	117	356	0	ENST00000263967.3:c.2702G>T	p.Cys901Phe	p.C901F	ENST00000263967	NM_006218.2	901	tGt/tTt																																																																															
ATM	472	MSKCC	GRCh37	11	108150335	108150335	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0075269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	34	288	0	ENST00000278616.4:c.3402G>A	p.Met1134Ile	p.M1134I	ENST00000278616	NM_000051.3	1134	atG/atA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0065715-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	9	345	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0071303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	36	508	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604783	48604783	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	10	416	0	ENST00000342988.3:c.1606del	p.Leu536Ter	p.L536*	ENST00000342988	NM_005359.5	535	ctC/ct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0073267-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			230	42	178	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0073267-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			436	37	418	0	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
RHOA	387	MSKCC	GRCh37	3	49412907	49412907	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073267-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			432	69	400	0	ENST00000418115.1:c.116T>G	p.Phe39Cys	p.F39C	ENST00000418115	NM_001664.2	39	tTt/tGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877972	151877972	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073267-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			492	38	473	0	ENST00000262189.6:c.6973del	p.Gln2325SerfsTer40	p.Q2325Sfs*40	ENST00000262189	NM_170606.2	2325	Cag/ag																																																																															
EP300	2033	MSKCC	GRCh37	22	41526008	41526008	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0074150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	46	152	0	ENST00000263253.7:c.1282+1G>A		p.X428_splice	ENST00000263253	NM_001429.3	428																																																																																
PIK3CB	5291	MSKCC	GRCh37	3	138376590	138376590	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	18	194	1	ENST00000289153.2:c.2884T>A	p.Tyr962Asn	p.Y962N	ENST00000289153	NM_006219.2	962	Tat/Aat																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114162	115114163	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0074150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	111	264	0	ENST00000257566.3:c.1054_1055del	p.Ala352PhefsTer22	p.A352Ffs*22	ENST00000257566	NM_016569.3	352	GCt/t																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061837	38061837	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	45	404	0	ENST00000250448.2:c.152del	p.Asn51ThrfsTer3	p.N51Tfs*3	ENST00000250448	NM_004496.3	51	aAc/ac																																																																															
RB1	5925	MSKCC	GRCh37	13	48939029	48939029	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0075131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	218	183	0	ENST00000267163.4:c.862-1G>A		p.X288_splice	ENST00000267163	NM_000321.2	288																																																																																
RNF43	54894	MSKCC	GRCh37	17	56435317	56435317	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200066146		P-0075131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	237	524	2	ENST00000407977.2:c.1820C>T	p.Ser607Leu	p.S607L	ENST00000407977		607	tCg/tTg																																																																															
CCND2	894	MSKCC	GRCh37	12	4383219	4383219	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	163	402	2	ENST00000261254.3:c.13T>C	p.Cys5Arg	p.C5R	ENST00000261254	NM_001759.3	5	Tgc/Cgc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11958264	11958265	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTACTA			P-0075131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	110	193	0	ENST00000353533.5:c.180_181insATTTACT	p.Leu61IlefsTer24	p.L61Ifs*24	ENST00000353533	NM_003010.3	58	-/TTTACTA																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15964919	15964919	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	263	392	1	ENST00000268712.3:c.5677C>T	p.Gln1893Ter	p.Q1893*	ENST00000268712	NM_006311.3	1893	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578494	7578499	+	inframe_deletion	In_Frame_Del	DEL	ACAGCT	ACAGCT	-			P-0075131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	370	446	1	ENST00000269305.4:c.431_436del	p.Gln144_Trp146delinsArg	p.Q144_W146delinsR	ENST00000269305	NM_001126112.2	144	cAGCTGTgg/cgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385132	41385132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	77	304	1	ENST00000373198.4:c.829G>A	p.Val277Met	p.V277M	ENST00000373198	NM_133170.3	277	Gtg/Atg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712844	43712844	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2230449		P-0075133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	185	518	1	ENST00000382044.4:c.4340G>A	p.Arg1447Gln	p.R1447Q	ENST00000382044	NM_001141980.1	1447	cGa/cAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920447	114920447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	98	406	0	ENST00000543371.1:c.1388G>T	p.Cys463Phe	p.C463F	ENST00000543371	NM_001198531.1	463	tGc/tTc																																																																															
SDHC	6391	MSKCC	GRCh37	1	161310401	161310401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760572684		P-0075133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	114	399	0	ENST00000367975.2:c.197C>T	p.Ala66Val	p.A66V	ENST00000367975	NM_003001.3	66	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	96	282	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818741	32818741	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	112	478	0	ENST00000354258.4:c.1210A>G	p.Lys404Glu	p.K404E	ENST00000354258	NM_000593.5	404	Aag/Gag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100819	27100820	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	A			P-0075133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	90	429	0	ENST00000324856.7:c.4103dup	p.Asn1368LysfsTer77	p.N1368Kfs*77	ENST00000324856	NM_006015.4	1367	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7579566	7579567	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	A			P-0075133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	204	610	0	ENST00000269305.4:c.120_121delinsT	p.Met40IlefsTer4	p.M40Ifs*4	ENST00000269305	NM_001126112.2	40	atGGat/atTat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0075137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	200	316	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200087	138200087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150513567		P-0075137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	122	379	0	ENST00000237289.4:c.1505G>A	p.Arg502Gln	p.R502Q	ENST00000237289	NM_001270507.1	502	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7573991	7573991	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	243	308	0	ENST00000269305.4:c.1036G>T	p.Glu346Ter	p.E346*	ENST00000269305	NM_001126112.2	346	Gag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259441	55259441	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	211	294	0	ENST00000275493.2:c.2499G>T	p.Leu833Phe	p.L833F	ENST00000275493	NM_005228.3	833	ttG/ttT																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149495459	149495459	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	196	436	0	ENST00000261799.4:c.3188C>A	p.Pro1063His	p.P1063H	ENST00000261799	NM_002609.3	1063	cCc/cAc																																																																															
KIT	3815	MSKCC	GRCh37	4	55561870	55561870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			886	77	320	0	ENST00000288135.5:c.260C>A	p.Ala87Glu	p.A87E	ENST00000288135	NM_000222.2	87	gCa/gAa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058760	180058760	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	85	356	0	ENST00000261937.6:c.77C>A	p.Ser26Tyr	p.S26Y	ENST00000261937	NM_182925.4	26	tCc/tAc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851378	156851378	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	153	355	0	ENST00000524377.1:c.2335G>T	p.Ala779Ser	p.A779S	ENST00000524377	NM_002529.3	779	Gcc/Tcc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30325730	30325730	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs371207788		P-0075137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	370	260	0	ENST00000322652.5:c.1928A>G	p.Tyr643Cys	p.Y643C	ENST00000322652	NM_015355.2	643	tAt/tGt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246217	46246217	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	245	327	0	ENST00000334344.6:c.4312del	p.Ala1438GlnfsTer15	p.A1438Qfs*15	ENST00000334344	NM_152641.2	1437	gcG/gc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139802549	139802549	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	99	296	0	ENST00000247668.2:c.394A>T	p.Met132Leu	p.M132L	ENST00000247668	NM_021138.3	132	Atg/Ttg																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0075265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	47	376	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039279	47039279	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0075265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	40	324	0	ENST00000329236.7:c.671C>T	p.Thr224Ile	p.T224I	ENST00000329236	NM_001204466.1	224	aCc/aTc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9543646	9543646	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0075265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	29	309	0	ENST00000353224.5:c.1508A>C	p.His503Pro	p.H503P	ENST00000353224	NM_177990.2	503	cAt/cCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0075266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	28	272	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0075266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	59	217	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945010	31945010	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	80	323	0	ENST00000340398.3:c.91C>A	p.Pro31Thr	p.P31T	ENST00000340398	NM_001013699.2	31	Ccc/Acc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198268362	198268362	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	25	216	0	ENST00000335508.6:c.1666del	p.Ile556LeufsTer11	p.I556Lfs*11	ENST00000335508	NM_012433.2	556	Att/tt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134825312	134825312	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	32	271	0	ENST00000398015.3:c.828G>T	p.Lys276Asn	p.K276N	ENST00000398015	NM_004441.4	276	aaG/aaT																																																																															
SPEN	23013	MSKCC	GRCh37	1	16264491	16264491	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747375812		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	104	255	0	ENST00000375759.3:c.10694G>A	p.Arg3565Gln	p.R3565Q	ENST00000375759	NM_015001.2	3565	cGa/cAa																																																																															
PARP1	142	MSKCC	GRCh37	1	226568817	226568818	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs779960019		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	104	300	0	ENST00000366794.5:c.1251dup	p.Lys418GlufsTer24	p.K418Efs*24	ENST00000366794	NM_001618.3	417	-/G																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023903	27023904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	66	253	0	ENST00000324856.7:c.1015dup	p.Ala339GlyfsTer61	p.A339Gfs*61	ENST00000324856	NM_006015.4	337	tgg/tGgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097609	27097609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	69	313	0	ENST00000324856.7:c.3199-1G>T		p.X1067_splice	ENST00000324856	NM_006015.4	1067																																																																																
JUN	3725	MSKCC	GRCh37	1	59248324	59248325	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	94	295	0	ENST00000371222.2:c.418dup	p.Ala140GlyfsTer170	p.A140Gfs*170	ENST00000371222	NM_002228.3	140	gca/gGca																																																																															
TET1	80312	MSKCC	GRCh37	10	70332273	70332273	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	73	355	0	ENST00000373644.4:c.184del	p.Thr62GlnfsTer13	p.T62Qfs*13	ENST00000373644	NM_030625.2	60	Aaa/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717769	89717770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	38	208	0	ENST00000371953.3:c.800dup	p.Asp268GlyfsTer30	p.D268Gfs*30	ENST00000371953	NM_000314.4	265	cta/ctAa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137283	64137283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	68	289	0	ENST00000334205.4:c.1715C>T	p.Thr572Met	p.T572M	ENST00000334205	NM_003942.2	572	aCg/aTg																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813415	102813415	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912430		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	94	278	0	ENST00000307046.8:c.274G>A	p.Val92Met	p.V92M	ENST00000307046	NM_001111285.1	92	Gtg/Atg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112915797	112915797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	75	293	0	ENST00000351677.2:c.1070C>T	p.Thr357Met	p.T357M	ENST00000351677	NM_002834.3	357	aCg/aTg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	88	369	2	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
POLE	5426	MSKCC	GRCh37	12	133219832	133219832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	78	292	0	ENST00000320574.5:c.4529C>T	p.Ala1510Val	p.A1510V	ENST00000320574	NM_006231.2	1510	gCa/gTa																																																																															
POLE	5426	MSKCC	GRCh37	12	133244133	133244133	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759398253		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	97	302	0	ENST00000320574.5:c.2275C>T	p.Arg759Cys	p.R759C	ENST00000320574	NM_006231.2	759	Cgt/Tgt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245553	46245553	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369610372		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	104	335	0	ENST00000334344.6:c.3647C>T	p.Thr1216Met	p.T1216M	ENST00000334344	NM_152641.2	1216	aCg/aTg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	464397	464397	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746045026		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	51	280	0	ENST00000399788.2:c.797G>A	p.Arg266Gln	p.R266Q	ENST00000399788	NM_001042603.1	266	cGa/cAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424188	49424188	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750738360		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	58	169	0	ENST00000301067.7:c.13874C>T	p.Ser4625Leu	p.S4625L	ENST00000301067	NM_003482.3	4625	tCg/tTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424970	49424970	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783691		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	103	343	0	ENST00000301067.7:c.13518del	p.Ser4507AlafsTer12	p.S4507Afs*12	ENST00000301067	NM_003482.3	4506	ccC/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	88	342	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489535	56489535	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1403278713		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	115	340	0	ENST00000267101.3:c.2000G>A	p.Arg667His	p.R667H	ENST00000267101	NM_001982.3	667	cGt/cAt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860074	57860075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs774148738		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	89	308	3	ENST00000228682.2:c.821dup	p.Cys275LeufsTer32	p.C275Lfs*32	ENST00000228682	NM_005269.2	272	tgg/tGgg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28636134	28636134	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200841206		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	107	320	0	ENST00000241453.7:c.238G>A	p.Ala80Thr	p.A80T	ENST00000241453	NM_004119.2	80	Gct/Act																																																																															
RB1	5925	MSKCC	GRCh37	13	48954198	48954198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398123331		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	53	146	0	ENST00000267163.4:c.1399C>T	p.Arg467Ter	p.R467*	ENST00000267163	NM_000321.2	467	Cga/Tga																																																																															
B2M	567	MSKCC	GRCh37	15	45007743	45007743	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	224	296	0	ENST00000558401.1:c.190G>T	p.Glu64Ter	p.E64*	ENST00000558401	NM_004048.2	64	Gag/Tag																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628281	90628281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	375	365	0	ENST00000330062.3:c.1130G>A	p.Arg377His	p.R377H	ENST00000330062	NM_002168.2	377	cGt/cAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274211	10274211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779149309		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	71	252	0	ENST00000330684.3:c.58G>A	p.Gly20Ser	p.G20S	ENST00000330684	NM_001134407.1	20	Ggt/Agt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647622	3647622	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1265030199		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	91	327	0	ENST00000294008.3:c.1441C>T	p.Arg481Ter	p.R481*	ENST00000294008	NM_032444.2	481	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3790459	3790459	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	92	287	0	ENST00000262367.5:c.4074del	p.Phe1358LeufsTer18	p.F1358Lfs*18	ENST00000262367	NM_004380.2	1358	ttT/tt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991494	72991494	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1356895082		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	112	324	0	ENST00000268489.5:c.2551G>A	p.Gly851Ser	p.G851S	ENST00000268489	NM_006885.3	851	Ggc/Agc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351310	89351310	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766646838		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	106	415	0	ENST00000301030.4:c.1640G>A	p.Arg547Gln	p.R547Q	ENST00000301030	NM_001256183.1	547	cGg/cAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16097786	16097786	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201037902		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	79	266	0	ENST00000268712.3:c.98G>A	p.Arg33His	p.R33H	ENST00000268712	NM_006311.3	33	cGc/cAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29652839	29652839	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	27	219	0	ENST00000358273.4:c.4837T>C	p.Phe1613Leu	p.F1613L	ENST00000358273	NM_001042492.2	1613	Ttc/Ctc																																																																															
RARA	5914	MSKCC	GRCh37	17	38512401	38512402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs745553450		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	50	283	1	ENST00000254066.5:c.1319dup	p.Pro441AlafsTer5	p.P441Afs*5	ENST00000254066	NM_000964.3	438	gcc/gCcc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	93	349	0	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246038	41246038	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80357445		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	59	323	0	ENST00000357654.3:c.1510C>T	p.Arg504Cys	p.R504C	ENST00000357654	NM_007294.3	504	Cgt/Tgt																																																																															
CD79B	974	MSKCC	GRCh37	17	62006641	62006641	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149266494		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	100	306	0	ENST00000392795.3:c.638C>T	p.Thr213Met	p.T213M	ENST00000392795	NM_001039933.1	213	aCg/aTg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	95	333	0	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	75	257	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	111	300	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	100	308	0	ENST00000269305.4:c.686_687del	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78867626	78867626	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781190662		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	38	320	0	ENST00000306801.3:c.2362C>T	p.Arg788Cys	p.R788C	ENST00000306801	NM_020761.2	788	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591931	48591931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	95	292	0	ENST00000342988.3:c.1094G>A	p.Gly365Asp	p.G365D	ENST00000342988	NM_005359.5	365	gGt/gAt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10257033	10257033	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754990148		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	82	245	0	ENST00000340748.4:c.2840C>T	p.Thr947Met	p.T947M	ENST00000340748		947	aCg/aTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101976	11101976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	94	305	0	ENST00000344626.4:c.1396C>T	p.Arg466Cys	p.R466C	ENST00000344626	NM_003072.3	466	Cgc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276860	15276861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs753725730		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	73	333	1	ENST00000263388.2:c.5404dup	p.Ala1802GlyfsTer8	p.A1802Gfs*8	ENST00000263388	NM_000435.2	1802	gct/gGct																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257102	19257102	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	74	226	0	ENST00000162023.5:c.861del	p.Ala288ProfsTer?	p.A288Pfs*?	ENST00000162023		287	ccC/cc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210837	2210837	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753115153		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	118	308	0	ENST00000398665.3:c.1334C>T	p.Ala445Val	p.A445V	ENST00000398665	NM_032482.2	445	gCg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219692	36219692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	83	324	0	ENST00000222270.7:c.4589C>T	p.Ala1530Val	p.A1530V	ENST00000222270	NM_014727.1	1530	gCg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219725	36219725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	89	315	0	ENST00000222270.7:c.4622C>T	p.Ala1541Val	p.A1541V	ENST00000222270	NM_014727.1	1541	gCg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	107	424	0	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	92	287	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
CIC	23152	MSKCC	GRCh37	19	42795053	42795053	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	105	348	0	ENST00000575354.2:c.2133G>T	p.Met711Ile	p.M711I	ENST00000575354	NM_015125.3	711	atG/atT																																																																															
CIC	23152	MSKCC	GRCh37	19	42799130	42799131	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	67	263	0	ENST00000575354.2:c.4620dup	p.Thr1541HisfsTer18	p.T1541Hfs*18	ENST00000575354	NM_015125.3	1538	-/C																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	42	132	0	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	76	271	1	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	37	116	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
INSR	3643	MSKCC	GRCh37	19	7170599	7170599	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs556950372		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	48	325	0	ENST00000302850.5:c.1432C>T	p.Arg478Cys	p.R478C	ENST00000302850	NM_000208.2	478	Cgc/Tgc																																																																															
INSR	3643	MSKCC	GRCh37	19	7293878	7293878	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	79	368	2	ENST00000302850.5:c.25del	p.Ala9ArgfsTer56	p.A9Rfs*56	ENST00000302850	NM_000208.2	9	Gcg/cg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660838	227660838	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376286000		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	68	345	0	ENST00000305123.5:c.2617C>T	p.Arg873Trp	p.R873W	ENST00000305123	NM_005544.2	873	Cgg/Tgg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703538	47703538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63749932		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	88	253	0	ENST00000233146.2:c.2038C>T	p.Arg680Ter	p.R680*	ENST00000233146	NM_000251.2	680	Cga/Tga																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99175934	99175934	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	58	203	0	ENST00000074304.5:c.1850del	p.Pro617LeufsTer18	p.P617Lfs*18	ENST00000074304	NM_001134224.1	616	Ccc/cc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62318996	62318996	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	24	339	0	ENST00000482936.1:c.1354G>A	p.Val452Met	p.V452M	ENST00000482936		452	Gtg/Atg																																																																															
ERG	2078	MSKCC	GRCh37	21	39755441	39755441	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	104	337	0	ENST00000288319.7:c.1324T>C	p.Ser442Pro	p.S442P	ENST00000288319	NM_182918.3	442	Tct/Cct																																																																															
ATR	545	MSKCC	GRCh37	3	142177876	142177876	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777776233		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	58	299	1	ENST00000350721.4:c.7427G>A	p.Arg2476His	p.R2476H	ENST00000350721	NM_001184.3	2476	cGt/cAt																																																																															
TP63	8626	MSKCC	GRCh37	3	189612029	189612029	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368336834		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	101	270	0	ENST00000264731.3:c.1781G>A	p.Arg594Gln	p.R594Q	ENST00000264731	NM_003722.4	594	cGa/cAa																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940951	49940951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	32	337	0	ENST00000296474.3:c.92G>A	p.Arg31His	p.R31H	ENST00000296474	NM_002447.2	31	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249456	153249456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	78	256	0	ENST00000281708.4:c.1322G>A	p.Arg441Gln	p.R441Q	ENST00000281708	NM_033632.3	441	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112151245	112151246	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	69	259	0	ENST00000257430.4:c.893_894del	p.His298LeufsTer28	p.H298Lfs*28	ENST00000257430	NM_000038.5	296	agCAca/agca																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	104	389	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149504305	149504305	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780819031		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	76	218	0	ENST00000261799.4:c.1897G>A	p.Val633Ile	p.V633I	ENST00000261799	NM_002609.3	633	Gtc/Atc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522601	176522601	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	84	351	2	ENST00000292408.4:c.1703del	p.Pro568GlnfsTer53	p.P568Qfs*53	ENST00000292408	NM_213647.1	566	cgC/cg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681120	117681120	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772514180		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	59	317	0	ENST00000368508.3:c.3500del	p.Leu1167Ter	p.L1167*	ENST00000368508	NM_002944.2	1167	tTa/ta																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670626	30670626	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1271670724		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	107	311	0	ENST00000376406.3:c.5894C>T	p.Pro1965Leu	p.P1965L	ENST00000376406	NM_014641.2	1965	cCg/cTg																																																																															
POT1	25913	MSKCC	GRCh37	7	124532409	124532410	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	46	227	0	ENST00000357628.3:c.33_34dup	p.Thr12IlefsTer4	p.T12Ifs*4	ENST00000357628	NM_015450.2	12	aca/aTAca																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	77	325	0	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450300	50450300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	90	337	1	ENST00000331340.3:c.484C>T	p.Arg162Trp	p.R162W	ENST00000331340	NM_006060.4	162	Cgg/Tgg																																																																															
HGF	3082	MSKCC	GRCh37	7	81374338	81374338	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202185530		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	49	217	0	ENST00000222390.5:c.724C>T	p.Arg242Trp	p.R242W	ENST00000222390	NM_000601.4	242	Cgg/Tgg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141549472	141549472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1285375898		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	78	294	0	ENST00000220592.5:c.2116G>A	p.Val706Met	p.V706M	ENST00000220592	NM_012154.3	706	Gtg/Atg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412288	139412288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761629787		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	62	299	0	ENST00000277541.6:c.1357G>A	p.Val453Ile	p.V453I	ENST00000277541	NM_017617.3	453	Gtc/Atc																																																																															
TEK	7010	MSKCC	GRCh37	9	27158131	27158131	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772321726		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	99	318	2	ENST00000380036.4:c.355C>T	p.Arg119Cys	p.R119C	ENST00000380036	NM_000459.3	119	Cgt/Tgt																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165644	118165644	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs538766512		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	101	345	1	ENST00000369448.3:c.154G>A	p.Val52Ile	p.V52I	ENST00000369448	NM_017709.3	52	Gtc/Atc																																																																															
MCL1	4170	MSKCC	GRCh37	1	150550929	150550929	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760136148		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	42	321	0	ENST00000369026.2:c.727G>A	p.Val243Met	p.V243M	ENST00000369026	NM_021960.4	243	Gtg/Atg																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551474	150551474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	75	319	0	ENST00000369026.2:c.533C>T	p.Ser178Leu	p.S178L	ENST00000369026	NM_021960.4	178	tCg/tTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262247	16262247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	93	298	1	ENST00000375759.3:c.9512C>T	p.Ala3171Val	p.A3171V	ENST00000375759	NM_015001.2	3171	gCc/gTc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175957442	175957442	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	70	291	0	ENST00000367669.3:c.1954G>T	p.Gly652Ter	p.G652*	ENST00000367669	NM_022457.5	652	Gga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27022895	27022895	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	62	232	0	ENST00000324856.7:c.1A>G	p.Met1?	p.M1?	ENST00000324856	NM_006015.4	1	Atg/Gtg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36931976	36931976	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	74	358	0	ENST00000361632.4:c.2493G>T	p.Glu831Asp	p.E831D	ENST00000361632		831	gaG/gaT																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781625	9781625	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	76	280	0	ENST00000377346.4:c.1935C>A	p.His645Gln	p.H645Q	ENST00000377346	NM_005026.3	645	caC/caA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89712009	89712015	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AACTTGC	AACTTGC	-			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	54	216	0	ENST00000371953.3:c.628_634del	p.Thr210IlefsTer9	p.T210Ifs*9	ENST00000371953	NM_000314.4	209	ggAACTTGC/gg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575364	64575364	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	112	322	0	ENST00000337652.1:c.668G>A	p.Arg223Gln	p.R223Q	ENST00000337652	NM_130803.2	223	cGg/cAg																																																																															
CCND1	595	MSKCC	GRCh37	11	69462862	69462864	+	inframe_deletion	In_Frame_Del	DEL	CTA	CTA	-			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	86	318	0	ENST00000227507.2:c.679_681del	p.Tyr227del	p.Y227del	ENST00000227507	NM_053056.2	225	tcCTAc/tcc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94918607	94918607	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	51	272	0	ENST00000536441.1:c.575A>G	p.His192Arg	p.H192R	ENST00000536441	NM_144665.3	192	cAt/cGt																																																																															
POLE	5426	MSKCC	GRCh37	12	133214721	133214721	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	65	332	0	ENST00000320574.5:c.5557A>G	p.Ile1853Val	p.I1853V	ENST00000320574	NM_006231.2	1853	Atc/Gtc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	438182	438182	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1309592962		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	85	280	0	ENST00000399788.2:c.1787G>A	p.Arg596His	p.R596H	ENST00000399788	NM_001042603.1	596	cGt/cAt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861798	57861798	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	27	342	0	ENST00000228682.2:c.1099C>A	p.Pro367Thr	p.P367T	ENST00000228682	NM_005269.2	367	Cct/Act																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865788	57865788	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	36	376	0	ENST00000228682.2:c.3265A>C	p.Ser1089Arg	p.S1089R	ENST00000228682	NM_005269.2	1089	Agt/Cgt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437236	110437236	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	31	113	0	ENST00000375856.3:c.1165C>A	p.Pro389Thr	p.P389T	ENST00000375856	NM_003749.2	389	Ccc/Acc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562882	95562882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	87	308	0	ENST00000343455.3:c.4375G>A	p.Gly1459Arg	p.G1459R	ENST00000343455	NM_177438.2	1459	Ggg/Agg																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675059	40675059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	98	247	0	ENST00000249776.8:c.23C>A	p.Pro8His	p.P8H	ENST00000249776	NM_033286.3	8	cCc/cAc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576147	88576147	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	84	308	0	ENST00000360948.2:c.1526C>A	p.Pro509His	p.P509H	ENST00000360948	NM_001012338.2	509	cCt/cAt																																																																															
BLM	641	MSKCC	GRCh37	15	91346817	91346817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	55	299	0	ENST00000355112.3:c.3425C>T	p.Ala1142Val	p.A1142V	ENST00000355112	NM_000057.2	1142	gCc/gTc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346813	89346813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	79	308	0	ENST00000301030.4:c.6137C>T	p.Ala2046Val	p.A2046V	ENST00000301030	NM_001256183.1	2046	gCc/gTc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351508	89351508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	114	363	0	ENST00000301030.4:c.1442C>T	p.Ser481Leu	p.S481L	ENST00000301030	NM_001256183.1	481	tCg/tTg																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33680940	33680940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	49	201	0	ENST00000308377.4:c.1337C>T	p.Ala446Val	p.A446V	ENST00000308377	NM_152270.3	446	gCt/gTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101910	11101910	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs550815250		P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	103	316	0	ENST00000344626.4:c.1330C>T	p.Arg444Cys	p.R444C	ENST00000344626	NM_003072.3	444	Cgc/Tgc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18968268	18968268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	21	296	0	ENST00000262803.5:c.2108G>A	p.Arg703Gln	p.R703Q	ENST00000262803	NM_002911.3	703	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220138	36220140	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	95	348	0	ENST00000222270.7:c.4861_4863del	p.Glu1621del	p.E1621del	ENST00000222270	NM_014727.1	1620	GAG/-																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422264	47422264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	91	288	0	ENST00000404338.3:c.332C>T	p.Thr111Met	p.T111M	ENST00000404338	NM_004491.4	111	aCg/aTg																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873107	136873107	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	100	359	1	ENST00000241393.3:c.391A>G	p.Ser131Gly	p.S131G	ENST00000241393	NM_003467.2	131	Agt/Ggt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47690268	47690352	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTAATAAGTGCAGCCAGAGATCTTGGTAAGAATGGGTCATTGGAGGTTGGAATAATTCTTTTGTCTATACACTGTATAGACAAA	ATTAATAAGTGCAGCCAGAGATCTTGGTAAGAATGGGTCATTGGAGGTTGGAATAATTCTTTTGTCTATACACTGTATAGACAAA	-			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	59	279	0	ENST00000233146.2:c.1487_1510+61del		p.X496_splice	ENST00000233146	NM_000251.2	496																																																																																
INPP4A	3631	MSKCC	GRCh37	2	99155403	99155403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	101	288	0	ENST00000074304.5:c.629C>T	p.Ser210Phe	p.S210F	ENST00000074304	NM_001134224.1	210	tCc/tTc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098514	47098514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	89	343	0	ENST00000409792.3:c.6760G>A	p.Val2254Ile	p.V2254I	ENST00000409792	NM_014159.6	2254	Gtt/Att																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143326393	143326394	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	77	259	0	ENST00000262992.4:c.220_221del	p.Leu75AspfsTer26	p.L75Dfs*26	ENST00000262992	NM_001101669.1	74	AGt/t																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753941	57753941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	83	259	0	ENST00000274289.3:c.683C>T	p.Ala228Val	p.A228V	ENST00000274289	NM_006622.3	228	gCc/gTc																																																																															
IRF4	3662	MSKCC	GRCh37	6	398879	398879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	77	283	0	ENST00000380956.4:c.689C>T	p.Ala230Val	p.A230V	ENST00000380956	NM_001195286.1	230	gCt/gTt																																																																															
POT1	25913	MSKCC	GRCh37	7	124482874	124482874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	46	231	0	ENST00000357628.3:c.1150A>G	p.Lys384Glu	p.K384E	ENST00000357628	NM_015450.2	384	Aaa/Gaa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739584	41739584	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	14	130	0	ENST00000242208.4:c.388+1G>T		p.X130_splice	ENST00000242208	NM_002192.2	130																																																																																
WHSC1L1	54904	MSKCC	GRCh37	8	38187206	38187206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	81	325	0	ENST00000317025.8:c.1271C>T	p.Ser424Phe	p.S424F	ENST00000317025	NM_023034.1	424	tCt/tTt																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128347990	128347990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	85	286	0	ENST00000265960.3:c.515C>T	p.Thr172Ile	p.T172I	ENST00000265960	NM_001006617.1	172	aCa/aTa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139418228	139418228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	80	292	0	ENST00000277541.6:c.344G>A	p.Gly115Asp	p.G115D	ENST00000277541	NM_017617.3	115	gGc/gAc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2161872	2161872	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	84	314	0	ENST00000349721.2:c.4168A>G	p.Ile1390Val	p.I1390V	ENST00000349721	NM_003070.3	1390	Atc/Gtc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44928960	44928960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	84	234	0	ENST00000377967.4:c.2060G>T	p.Ser687Ile	p.S687I	ENST00000377967	NM_021140.2	687	aGc/aTc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53246989	53246989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	94	273	0	ENST00000375401.3:c.511G>A	p.Ala171Thr	p.A171T	ENST00000375401	NM_004187.3	171	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579324	7579346	+	frameshift_variant	Frame_Shift_Del	DEL	AGACTTGGCTGTCCCAGAATGCA	AGACTTGGCTGTCCCAGAATGCA	-			P-0075279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			40	58	281	0	ENST00000269305.4:c.341_363del	p.Leu114CysfsTer27	p.L114Cfs*27	ENST00000269305	NM_001126112.2	114	tTGCATTCTGGGACAGCCAAGTCT/t																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161221	56161221	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781300314		P-0075282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	127	339	0	ENST00000399503.3:c.1090C>T	p.Arg364Trp	p.R364W	ENST00000399503	NM_005921.1	364	Cgg/Tgg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0075282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	40	362	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993848	72993848	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778500476		P-0075282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	210	418	0	ENST00000268489.5:c.197C>T	p.Ala66Val	p.A66V	ENST00000268489	NM_006885.3	66	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577586	7577586	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	206	378	0	ENST00000269305.4:c.695T>G	p.Ile232Ser	p.I232S	ENST00000269305	NM_001126112.2	232	aTc/aGc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793332	139793332	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376801177		P-0075282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	34	323	0	ENST00000247668.2:c.140C>T	p.Ala47Val	p.A47V	ENST00000247668	NM_021138.3	47	gCg/gTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120442	70120442	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs865937701		P-0075282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	87	473	0	ENST00000245479.2:c.1444G>A	p.Asp482Asn	p.D482N	ENST00000245479	NM_000346.3	482	Gac/Aac																																																																															
RAD21	5885	MSKCC	GRCh37	8	117868489	117868489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	31	307	1	ENST00000297338.2:c.853G>A	p.Glu285Lys	p.E285K	ENST00000297338	NM_006265.2	285	Gaa/Aaa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347848	89347848	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	97	420	0	ENST00000301030.4:c.5102C>A	p.Thr1701Asn	p.T1701N	ENST00000301030	NM_001256183.1	1701	aCt/aAt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518019	8518019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	149	343	0	ENST00000356435.5:c.1372G>T	p.Asp458Tyr	p.D458Y	ENST00000356435		458	Gat/Tat																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726266	46726266	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149141765		P-0075282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	120	373	0	ENST00000371975.4:c.460C>T	p.Arg154Trp	p.R154W	ENST00000371975	NM_003579.3	154	Cgg/Tgg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221995	1221995	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201090		P-0075284-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	29	273	2	ENST00000326873.7:c.910C>T	p.Arg304Trp	p.R304W	ENST00000326873	NM_000455.4	304	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057520008		P-0075284-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	53	414	0	ENST00000269305.4:c.613T>A	p.Tyr205Asn	p.Y205N	ENST00000269305	NM_001126112.2	205	Tat/Aat																																																																															
SRC	6714	MSKCC	GRCh37	20	36012599	36012599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075284-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	24	263	0	ENST00000358208.4:c.43C>T	p.Arg15Cys	p.R15C	ENST00000358208		15	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075284-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	26	255	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
IGF2	3481	MSKCC	GRCh37	11	2161369	2161369	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075284-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	12	307	0	ENST00000434045.2:c.158T>A	p.Met53Lys	p.M53K	ENST00000434045	NM_001127598.1	53	aTg/aAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0075122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	127	384	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128199935	128199935	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	51	485	0	ENST00000341105.2:c.1370C>A	p.Thr457Lys	p.T457K	ENST00000341105	NM_032638.4	457	aCg/aAg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156841431	156841431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			738	45	419	0	ENST00000524377.1:c.734C>A	p.Pro245Gln	p.P245Q	ENST00000524377	NM_002529.3	245	cCa/cAa																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589633	69589633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	83	622	0	ENST00000168712.1:c.220G>T	p.Gly74Cys	p.G74C	ENST00000168712	NM_002007.2	74	Ggc/Tgc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38282199	38282199	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	65	440	0	ENST00000425967.3:c.857C>A	p.Pro286His	p.P286H	ENST00000425967	NM_001174067.1	286	cCc/cAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467399	66467399	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	82	425	1	ENST00000273854.3:c.870G>T	p.Met290Ile	p.M290I	ENST00000273854	NM_004439.5	290	atG/atT																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271699	15271699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	78	478	0	ENST00000263388.2:c.6740C>T	p.Pro2247Leu	p.P2247L	ENST00000263388	NM_000435.2	2247	cCa/cTa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143983	11143983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	32	360	0	ENST00000344626.4:c.3564C>A	p.Asp1188Glu	p.D1188E	ENST00000344626	NM_003072.3	1188	gaC/gaA																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281497	49281497	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	75	385	0	ENST00000282018.3:c.544G>C	p.Gly182Arg	p.G182R	ENST00000282018	NM_020377.2	182	Ggc/Cgc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797378	45797378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075253-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	135	393	4	ENST00000372115.3:c.1099G>A	p.Gly367Arg	p.G367R	ENST00000372115	NM_001048171.1	367	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs786203436		P-0075253-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	142	369	4	ENST00000269305.4:c.487T>G	p.Tyr163Asp	p.Y163D	ENST00000269305	NM_001126112.2	163	Tac/Gac																																																																															
RB1	5925	MSKCC	GRCh37	13	48955472	48955472	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075253-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	96	274	2	ENST00000267163.4:c.1588A>G	p.Lys530Glu	p.K530E	ENST00000267163	NM_000321.2	530	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0075254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	283	318	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868193	37868193	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			3112	1817	260	0	ENST00000269571.5:c.914C>G	p.Ser305Cys	p.S305C	ENST00000269571		305	tCt/tGt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041409	47041409	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	247	392	0	ENST00000329236.7:c.1519C>T	p.Gln507Ter	p.Q507*	ENST00000329236	NM_001204466.1	507	Cag/Tag																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61323100	61323100	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200813295		P-0075254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	102	311	0	ENST00000283752.5:c.964G>A	p.Gly322Ser	p.G322S	ENST00000283752	NM_006919.2	322	Ggt/Agt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49442974	49442974	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768072508		P-0075254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	97	292	0	ENST00000301067.7:c.3934C>T	p.Arg1312Cys	p.R1312C	ENST00000301067	NM_003482.3	1312	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175158	112175158	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0075254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	97	323	0	ENST00000257430.4:c.3867T>A	p.Cys1289Ter	p.C1289*	ENST00000257430	NM_000038.5	1289	tgT/tgA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0075259-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	244	324	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0075259-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	147	284	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
ATM	472	MSKCC	GRCh37	11	108098419	108098419	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587779858		P-0073182-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			375	28	275	0	ENST00000278616.4:c.68G>A	p.Arg23Gln	p.R23Q	ENST00000278616	NM_000051.3	23	cGa/cAa																																																																															
XIAP	331	MSKCC	GRCh37	X	123022528	123022528	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073182-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			172	16	104	0	ENST00000355640.3:c.937A>G	p.Ser313Gly	p.S313G	ENST00000355640		313	Agt/Ggt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs780442292		P-0074527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	58	476	0	ENST00000269305.4:c.401T>G	p.Phe134Cys	p.F134C	ENST00000269305	NM_001126112.2	134	tTt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0074527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	122	309	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61705971	61705972	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0074527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	29	295	0	ENST00000401558.2:c.3199_3200del	p.Glu1067ArgfsTer4	p.E1067Rfs*4	ENST00000401558	NM_003400.3	1067	GAa/a																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258727	16258727	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	40	614	4	ENST00000375759.3:c.5996del	p.Lys1999ArgfsTer23	p.K1999Rfs*23	ENST00000375759	NM_015001.2	1998	Aaa/aa																																																																															
PARP1	142	MSKCC	GRCh37	1	226568818	226568818	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	79	444	0	ENST00000366794.5:c.1251del	p.Lys418SerfsTer2	p.K418Sfs*2	ENST00000366794	NM_001618.3	417	ggG/gg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998685	100998685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	27	523	0	ENST00000325455.5:c.1117G>A	p.Ala373Thr	p.A373T	ENST00000325455	NM_001202474.3	373	Gcg/Acg																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981613	101981613	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs927540361		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	28	458	0	ENST00000282441.5:c.34G>C	p.Ala12Pro	p.A12P	ENST00000282441	NM_001130145.2	12	Gcc/Ccc																																																																															
ATM	472	MSKCC	GRCh37	11	108201014	108201014	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201314561		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	56	439	0	ENST00000278616.4:c.7381C>T	p.Arg2461Cys	p.R2461C	ENST00000278616	NM_000051.3	2461	Cgc/Tgc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344369	118344369	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	86	530	0	ENST00000534358.1:c.2495C>G	p.Pro832Arg	p.P832R	ENST00000534358	NM_005933.3	832	cCt/cGt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111884996	111884997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	76	567	0	ENST00000341259.2:c.998dup	p.Ser334GlnfsTer6	p.S334Qfs*6	ENST00000341259	NM_005475.2	332	agg/aGgg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112298	115112298	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772493303		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	56	485	0	ENST00000257566.3:c.1442C>T	p.Pro481Leu	p.P481L	ENST00000257566	NM_016569.3	481	cCg/cTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112323	115112324	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-	rs1381943852		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	43	472	0	ENST00000257566.3:c.1416_1417del	p.Leu473ProfsTer218	p.L473Pfs*218	ENST00000257566	NM_016569.3	472	gcGCtc/gctc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	402203	402203	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs770481173		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	92	494	0	ENST00000399788.2:c.4588A>G	p.Met1530Val	p.M1530V	ENST00000399788	NM_001042603.1	1530	Atg/Gtg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	404911	404911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	43	458	0	ENST00000399788.2:c.4283G>A	p.Arg1428Gln	p.R1428Q	ENST00000399788	NM_001042603.1	1428	cGa/cAa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	66	552	0	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436236	110436236	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778015136		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	41	522	0	ENST00000375856.3:c.2165C>T	p.Ala722Val	p.A722V	ENST00000375856	NM_003749.2	722	gCg/gTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138087	2138087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	69	575	0	ENST00000219476.3:c.5107G>A	p.Val1703Met	p.V1703M	ENST00000219476	NM_000548.3	1703	Gtg/Atg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820836	3820836	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747877878		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	47	565	0	ENST00000262367.5:c.2615C>T	p.Thr872Met	p.T872M	ENST00000262367	NM_004380.2	872	aCg/aTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820866	3820866	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772653113		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	87	536	0	ENST00000262367.5:c.2585C>T	p.Thr862Met	p.T862M	ENST00000262367	NM_004380.2	862	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821889	72821890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	25	546	1	ENST00000268489.5:c.10285dup	p.Arg3429ProfsTer2	p.R3429Pfs*2	ENST00000268489	NM_006885.3	3429	cgt/cCgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829566	72829566	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1445487502		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	31	482	0	ENST00000268489.5:c.7015C>T	p.Arg2339Cys	p.R2339C	ENST00000268489	NM_006885.3	2339	Cgc/Tgc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	43	562	0	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453399	40453399	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs759027671		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	73	529	5	ENST00000345506.4:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000345506	NM_003152.3	366	Ccc/cc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	91	684	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	99	538	0	ENST00000407977.2:c.349_350delinsA	p.Arg117ThrfsTer41	p.R117Tfs*41	ENST00000407977		117	CGc/Ac																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530103	63530103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1398258340		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	79	465	0	ENST00000307078.5:c.2332C>T	p.Arg778Trp	p.R778W	ENST00000307078	NM_004655.3	778	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141541	11141541	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	29	487	0	ENST00000344626.4:c.3522del	p.Phe1174LeufsTer42	p.F1174Lfs*42	ENST00000344626	NM_003072.3	1173	aTt/at																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967091	18967092	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs1384543747		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	42	389	0	ENST00000262803.5:c.1814_1815del	p.Glu605AlafsTer17	p.E605Afs*17	ENST00000262803	NM_002911.3	602	gcAGag/gcag																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257143	19257144	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	16	352	0	ENST00000162023.5:c.819dup	p.Thr274HisfsTer11	p.T274Hfs*11	ENST00000162023		273	-/C																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792470	33792470	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1196766447		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	46	415	0	ENST00000498907.2:c.851A>C	p.Glu284Ala	p.E284A	ENST00000498907	NM_004364.3	284	gAg/gCg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36209011	36209011	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	25	237	0	ENST00000222270.7:c.95del	p.Gly32AlafsTer14	p.G32Afs*14	ENST00000222270	NM_014727.1	31	Ggg/gg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210812	36210812	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763797736		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	58	625	1	ENST00000222270.7:c.563G>A	p.Arg188Gln	p.R188Q	ENST00000222270	NM_014727.1	188	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216188	36216188	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	73	643	1	ENST00000222270.7:c.3596G>C	p.Gly1199Ala	p.G1199A	ENST00000222270	NM_014727.1	1199	gGc/gCc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	34	661	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
BBC3	27113	MSKCC	GRCh37	19	47725018	47725019	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs762488821		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	85	583	1	ENST00000449228.1:c.725dup	p.Arg243GlnfsTer7	p.R243Qfs*7	ENST00000449228	NM_001127240.2	242	ggc/ggGc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919865	50919866	+	splice_acceptor_variant	Splice_Site	INS	-	-	G	rs756872503		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	65	518	3	ENST00000440232.2:c.2959dup		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
EPAS1	2034	MSKCC	GRCh37	2	46574061	46574061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	32	573	1	ENST00000263734.3:c.76C>T	p.Arg26Trp	p.R26W	ENST00000263734	NM_001430.4	26	Cgg/Tgg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46602913	46602913	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766854881		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	35	521	0	ENST00000263734.3:c.971C>T	p.Thr324Met	p.T324M	ENST00000263734	NM_001430.4	324	aCg/aTg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845259	42845259	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747772174		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	67	446	0	ENST00000398585.3:c.1003G>A	p.Val335Met	p.V335M	ENST00000398585	NM_001135099.1	335	Gtg/Atg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445647	29445647	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	56	520	0	ENST00000544604.2:c.1481del	p.Gly494AlafsTer76	p.G494Afs*76	ENST00000544604	NM_001206998.1	493	cGg/cg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998128	169998128	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs753143066		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	60	383	1	ENST00000295797.4:c.826del	p.Thr276GlnfsTer7	p.T276Qfs*7	ENST00000295797	NM_002740.5	273	ttA/tt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	33	502	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	33	525	0	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																															
RHOA	387	MSKCC	GRCh37	3	49413010	49413010	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519952		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	24	417	0	ENST00000418115.1:c.13C>T	p.Arg5Trp	p.R5W	ENST00000418115	NM_001664.2	5	Cgg/Tgg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52582108	52582108	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775162970		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	57	417	0	ENST00000394830.3:c.4720C>T	p.Arg1574Cys	p.R1574C	ENST00000394830	NM_018313.4	1574	Cgc/Tgc																																																																															
GAB1	2549	MSKCC	GRCh37	4	144258385	144258385	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs777158611		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	40	418	1	ENST00000262994.4:c.50del	p.Pro17ArgfsTer5	p.P17Rfs*5	ENST00000262994	NM_002039.3	15	tCc/tc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806181	1806181	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760502257		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	25	548	1	ENST00000260795.2:c.1206del	p.Lys403ArgfsTer29	p.K403Rfs*29	ENST00000260795		400	agC/ag																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807803	1807803	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913113		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	109	702	0	ENST00000260795.2:c.1862G>A	p.Arg621His	p.R621H	ENST00000260795		621	cGc/cAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356423	66356423	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	52	479	0	ENST00000273854.3:c.1074del	p.Ser359LeufsTer63	p.S359Lfs*63	ENST00000273854	NM_004439.5	358	ccC/cc																																																																															
APC	324	MSKCC	GRCh37	5	112178032	112178033	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	44	539	0	ENST00000257430.4:c.6747dup	p.Gly2250ArgfsTer5	p.G2250Rfs*5	ENST00000257430	NM_000038.5	2247	-/A																																																																															
TERT	7015	MSKCC	GRCh37	5	1279440	1279440	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1376041056		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	25	389	0	ENST00000310581.5:c.2096C>T	p.Ala699Val	p.A699V	ENST00000310581	NM_198253.2	699	gCc/gTc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522522	67522522	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs999932649		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	58	426	0	ENST00000274335.5:c.19C>T	p.Gln7Ter	p.Q7*	ENST00000274335		7	Cag/Tag																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	116	438	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129219	152129219	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1199270277		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	77	491	0	ENST00000206249.3:c.172G>A	p.Ala58Thr	p.A58T	ENST00000206249	NM_000125.3	58	Gcc/Acc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522599	157522599	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762183842		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	57	515	0	ENST00000346085.5:c.4871G>A	p.Arg1624Gln	p.R1624Q	ENST00000346085	NM_020732.3	1624	cGa/cAa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323362	31323363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	27	579	0	ENST00000412585.2:c.626dup	p.Thr211AspfsTer10	p.T211Dfs*10	ENST00000412585	NM_005514.6	209	cca/ccCa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324064	31324064	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	21	390	0	ENST00000412585.2:c.499A>G	p.Thr167Ala	p.T167A	ENST00000412585	NM_005514.6	167	Acc/Gcc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324494	31324494	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs9266161		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	54	568	1	ENST00000412585.2:c.314T>C	p.Leu105Pro	p.L105P	ENST00000412585	NM_005514.6	105	cTg/cCg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324506	31324507	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	44	590	0	ENST00000412585.2:c.301_302del	p.Ser101ProfsTer37	p.S101Pfs*37	ENST00000412585	NM_005514.6	101	AGc/c																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324735	31324735	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1055758550		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	36	457	0	ENST00000412585.2:c.74-1G>A		p.X25_splice	ENST00000412585	NM_005514.6	25																																																																																
SOX17	64321	MSKCC	GRCh37	8	55370802	55370802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	36	492	0	ENST00000297316.4:c.104C>T	p.Ser35Leu	p.S35L	ENST00000297316	NM_022454.3	35	tCg/tTg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137321023	137321023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	59	571	0	ENST00000481739.1:c.980C>T	p.Ala327Val	p.A327V	ENST00000481739	NM_002957.4	327	gCc/gTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417631	139417631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	71	436	0	ENST00000277541.6:c.413G>A	p.Cys138Tyr	p.C138Y	ENST00000277541	NM_017617.3	138	tGc/tAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376665	8376665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753080783		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	23	407	0	ENST00000356435.5:c.4448C>T	p.Thr1483Met	p.T1483M	ENST00000356435		1483	aCg/aTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376675	8376675	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs571411218		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	32	396	0	ENST00000356435.5:c.4438G>A	p.Val1480Ile	p.V1480I	ENST00000356435		1480	Gtt/Att																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98238432	98238432	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1347882326		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	36	503	0	ENST00000331920.6:c.1612G>A	p.Gly538Arg	p.G538R	ENST00000331920	NM_000264.3	538	Ggg/Agg																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123504057	123504057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	58	172	0	ENST00000371139.4:c.233G>A	p.Arg78Gln	p.R78Q	ENST00000371139	NM_001114937.2	78	cGg/cAg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222309	53222309	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	42	243	0	ENST00000375401.3:c.4523del	p.Pro1508LeufsTer36	p.P1508Lfs*36	ENST00000375401	NM_004187.3	1508	cCt/ct																																																																															
AR	367	MSKCC	GRCh37	X	66766424	66766424	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	11	218	0	ENST00000374690.3:c.1440del	p.Tyr481ThrfsTer29	p.Y481Tfs*29	ENST00000374690	NM_000044.3	479	gCc/gc																																																																															
TET1	80312	MSKCC	GRCh37	10	70427006	70427006	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	27	438	0	ENST00000373644.4:c.4666A>G	p.Asn1556Asp	p.N1556D	ENST00000373644	NM_030625.2	1556	Aat/Gat																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118371711	118371711	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	31	471	0	ENST00000534358.1:c.6168G>T	p.Arg2056Ser	p.R2056S	ENST00000534358	NM_005933.3	2056	agG/agT																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594579	47594579	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	58	596	2	ENST00000395288.2:c.1460A>G	p.Asp487Gly	p.D487G	ENST00000395288	NM_016506.5	487	gAt/gGt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435277	18435277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	65	562	0	ENST00000266497.5:c.262G>A	p.Glu88Lys	p.E88K	ENST00000266497		88	Gaa/Aaa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46254707	46254707	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	24	381	0	ENST00000334344.6:c.4897A>G	p.Met1633Val	p.M1633V	ENST00000334344	NM_152641.2	1633	Atg/Gtg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434814	99434814	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756302851		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	29	488	0	ENST00000268035.6:c.901G>A	p.Gly301Ser	p.G301S	ENST00000268035	NM_000875.3	301	Ggc/Agc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900435	3900435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	43	529	0	ENST00000262367.5:c.661G>A	p.Gly221Arg	p.G221R	ENST00000262367	NM_004380.2	221	Gga/Aga																																																																															
RARA	5914	MSKCC	GRCh37	17	38511521	38511521	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	60	382	0	ENST00000254066.5:c.1019A>G	p.Gln340Arg	p.Q340R	ENST00000254066	NM_000964.3	340	cAg/cGg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435915	56435915	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	85	656	0	ENST00000407977.2:c.1222G>T	p.Ala408Ser	p.A408S	ENST00000407977		408	Gcc/Tcc																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66525125	66525125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	44	411	0	ENST00000358598.2:c.884T>C	p.Ile295Thr	p.I295T	ENST00000358598	NM_212471.2	295	aTt/aCt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56377209	56377209	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	21	357	0	ENST00000348428.3:c.830T>C	p.Val277Ala	p.V277A	ENST00000348428	NM_006785.3	277	gTg/gCg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210668	2210668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	63	597	0	ENST00000398665.3:c.1165C>T	p.Pro389Ser	p.P389S	ENST00000398665	NM_032482.2	389	Ccg/Tcg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211800	36211800	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	35	655	0	ENST00000222270.7:c.1551C>G	p.Ser517Arg	p.S517R	ENST00000222270	NM_014727.1	517	agC/agG																																																																															
ACVR1	90	MSKCC	GRCh37	2	158636894	158636894	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	43	569	0	ENST00000263640.3:c.286G>T	p.Gly96Trp	p.G96W	ENST00000263640	NM_001105.4	96	Ggg/Tgg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178129285	178129285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	31	368	0	ENST00000397062.3:c.20C>T	p.Pro7Leu	p.P7L	ENST00000397062	NM_006164.4	7	cCg/cTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212652791	212652791	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	40	465	0	ENST00000342788.4:c.515C>A	p.Pro172His	p.P172H	ENST00000342788	NM_005235.2	172	cCt/cAt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662277	227662277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	99	632	1	ENST00000305123.5:c.1178C>T	p.Ser393Leu	p.S393L	ENST00000305123	NM_005544.2	393	tCg/tTg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39251278	39251278	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	17	341	1	ENST00000402219.2:c.1075C>T	p.Gln359Ter	p.Q359*	ENST00000402219	NM_005633.3	359	Cag/Tag																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655155	45655155	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	30	383	0	ENST00000407780.3:c.697G>T	p.Gly233Ter	p.G233*	ENST00000407780	NM_001283052.1	233	Gga/Tga																																																																															
EP300	2033	MSKCC	GRCh37	22	41513727	41513727	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	44	533	0	ENST00000263253.7:c.631G>T	p.Gly211Cys	p.G211C	ENST00000263253	NM_001429.3	211	Ggc/Tgc																																																																															
EP300	2033	MSKCC	GRCh37	22	41574359	41574359	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	94	569	0	ENST00000263253.7:c.6644A>G	p.Gln2215Arg	p.Q2215R	ENST00000263253	NM_001429.3	2215	cAa/cGa																																																																															
ATR	545	MSKCC	GRCh37	3	142178140	142178140	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	55	381	0	ENST00000350721.4:c.7278A>T	p.Glu2426Asp	p.E2426D	ENST00000350721	NM_001184.3	2426	gaA/gaT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952001	178952001	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	32	490	0	ENST00000263967.3:c.3056T>A	p.Ile1019Asn	p.I1019N	ENST00000263967	NM_006218.2	1019	aTt/aAt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067465	37067465	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	73	530	0	ENST00000231790.2:c.1376C>A	p.Ser459Ter	p.S459*	ENST00000231790	NM_000249.3	459	tCa/tAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332759	153332759	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	63	609	0	ENST00000281708.4:c.197C>A	p.Pro66His	p.P66H	ENST00000281708	NM_033632.3	66	cCt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112176359	112176359	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs201142277		P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	32	469	0	ENST00000257430.4:c.5068A>G	p.Ile1690Val	p.I1690V	ENST00000257430	NM_000038.5	1690	Att/Gtt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180041130	180041130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	29	631	0	ENST00000261937.6:c.3269T>C	p.Val1090Ala	p.V1090A	ENST00000261937	NM_182925.4	1090	gTg/gCg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31422995	31422995	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	25	486	0	ENST00000344624.3:c.3318del	p.Lys1106AsnfsTer11	p.K1106Nfs*11	ENST00000344624		1106	aaA/aa																																																																															
TRIP13	9319	MSKCC	GRCh37	5	917145	917145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	28	513	0	ENST00000166345.3:c.1226G>T	p.Gly409Val	p.G409V	ENST00000166345	NM_004237.3	409	gGg/gTg																																																																															
FYN	2534	MSKCC	GRCh37	6	111995802	111995802	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	60	436	0	ENST00000368678.4:c.1296del	p.Glu433ArgfsTer35	p.E433Rfs*35	ENST00000368678		432	ccC/cc																																																																															
STK19	8859	MSKCC	GRCh37	6	31940240	31940240	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	32	545	0	ENST00000375331.2:c.382C>T	p.Arg128Trp	p.R128W	ENST00000375331	NM_004197.1	128	Cgg/Tgg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738269	145738269	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	29	647	0	ENST00000428558.2:c.2716A>G	p.Ile906Val	p.I906V	ENST00000428558	NM_004260.3	906	Ata/Gta																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2039817	2039818	+	missense_variant	Missense_Mutation	DNP	AA	AA	CG			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	48	675	1	ENST00000349721.2:c.707_708delinsCG	p.Gln236Pro	p.Q236P	ENST00000349721	NM_003070.3	236	cAA/cCG																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518142	8518142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	35	513	0	ENST00000356435.5:c.1249C>T	p.Pro417Ser	p.P417S	ENST00000356435		417	Cca/Tca																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0074943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	46	419	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0074943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			81	25	451	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
GLI1	2735	MSKCC	GRCh37	12	57860138	57860138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	11	425	0	ENST00000228682.2:c.878G>A	p.Arg293His	p.R293H	ENST00000228682	NM_005269.2	293	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0074943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	52	281	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59858331	59858331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	11	342	0	ENST00000259008.2:c.1664C>T	p.Thr555Ile	p.T555I	ENST00000259008	NM_032043.2	555	aCt/aTt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63526159	63526159	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0074943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	41	517	0	ENST00000307078.5:c.2467G>T	p.Glu823Ter	p.E823*	ENST00000307078	NM_004655.3	823	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	187	440	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
TEK	7010	MSKCC	GRCh37	9	27217701	27217701	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772600804		P-0075104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	104	286	0	ENST00000380036.4:c.3007C>T	p.Arg1003Cys	p.R1003C	ENST00000380036	NM_000459.3	1003	Cgc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108159720	108159720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	97	319	0	ENST00000278616.4:c.4126C>T	p.Pro1376Ser	p.P1376S	ENST00000278616	NM_000051.3	1376	Cct/Tct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0075106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			51	25	240	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0075106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	36	514	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713427	40713427	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752787425		P-0075106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	26	582	0	ENST00000373198.4:c.4088G>A	p.Arg1363Gln	p.R1363Q	ENST00000373198	NM_133170.3	1363	cGg/cAg																																																																															
RARA	5914	MSKCC	GRCh37	17	38510611	38510611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	77	527	1	ENST00000254066.5:c.865G>A	p.Gly289Arg	p.G289R	ENST00000254066	NM_000964.3	289	Ggg/Agg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411276	63411276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	71	653	0	ENST00000330258.3:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000330258	NM_152424.3	631	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119780	70119781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0075106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			75	61	406	0	ENST00000245479.2:c.788dup	p.Arg264GlnfsTer32	p.R264Qfs*32	ENST00000245479	NM_000346.3	261	gag/gaGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	54	309	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112174098	112174099	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0075106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			81	65	496	0	ENST00000257430.4:c.2807_2808del	p.Asn936IlefsTer3	p.N936Ifs*3	ENST00000257430	NM_000038.5	936	aAT/a																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431399	49431399	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0075106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	34	597	0	ENST00000301067.7:c.9740del	p.Leu3247ArgfsTer83	p.L3247Rfs*83	ENST00000301067	NM_003482.3	3247	cTg/cg																																																																															
MAD2L2	10459	MSKCC	GRCh37	1	11734849	11734849	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759967644		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	90	327	0	ENST00000235310.3:c.619G>A	p.Ala207Thr	p.A207T	ENST00000235310		207	Gct/Act																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39325151	39325152	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	112	362	0	ENST00000373001.3:c.167dup	p.Ala57ArgfsTer2	p.A57Rfs*2	ENST00000373001	NM_022157.3	56	ggc/ggGc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	118	341	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	141	499	1	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307291	118307291	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	18	215	0	ENST00000534358.1:c.69del	p.Arg24AlafsTer4	p.R24Afs*4	ENST00000534358	NM_005933.3	22	Ggg/gg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	138	550	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
POLE	5426	MSKCC	GRCh37	12	133225618	133225618	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs536988344		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	145	491	0	ENST00000320574.5:c.4046C>T	p.Ala1349Val	p.A1349V	ENST00000320574	NM_006231.2	1349	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	234	300	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	464349	464349	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772720111		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	109	426	0	ENST00000399788.2:c.845G>A	p.Arg282Gln	p.R282Q	ENST00000399788	NM_001042603.1	282	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438211	49438211	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			688	38	389	0	ENST00000301067.7:c.5058del	p.Lys1686AsnfsTer36	p.K1686Nfs*36	ENST00000301067	NM_003482.3	1686	aaA/aa																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987165	36987165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	41	413	0	ENST00000354822.5:c.524C>T	p.Ser175Leu	p.S175L	ENST00000354822	NM_001079668.2	175	tCg/tTg																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	151	458	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
B2M	567	MSKCC	GRCh37	15	45007689	45007690	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	195	477	0	ENST00000558401.1:c.137_138del	p.Tyr46CysfsTer10	p.Y46Cfs*10	ENST00000558401	NM_004048.2	46	TAt/t																																																																															
BLM	641	MSKCC	GRCh37	15	91310208	91310208	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs747341586		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	30	326	0	ENST00000355112.3:c.2268del	p.Asp757ThrfsTer4	p.D757Tfs*4	ENST00000355112	NM_000057.2	754	tcA/tc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129088	2129088	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397514985		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	163	479	0	ENST00000219476.3:c.3022G>A	p.Val1008Met	p.V1008M	ENST00000219476	NM_000548.3	1008	Gtg/Atg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658541	3658541	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs757662453		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	192	525	1	ENST00000294008.3:c.425del	p.Gly142ValfsTer52	p.G142Vfs*52	ENST00000294008	NM_032444.2	142	gGt/gt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781375	3781375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			734	62	461	0	ENST00000262367.5:c.4990C>T	p.Arg1664Cys	p.R1664C	ENST00000262367	NM_004380.2	1664	Cgc/Tgc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3823850	3823850	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746728741		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			770	52	439	0	ENST00000262367.5:c.2365G>A	p.Ala789Thr	p.A789T	ENST00000262367	NM_004380.2	789	Gct/Act																																																																															
RARA	5914	MSKCC	GRCh37	17	38512402	38512402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	98	355	3	ENST00000254066.5:c.1319del	p.Pro440ArgfsTer203	p.P440Rfs*203	ENST00000254066	NM_000964.3	438	gCc/gc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	205	550	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	333	512	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	64	417	1	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45422959	45422959	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	134	390	0	ENST00000262160.6:c.169C>T	p.Arg57Ter	p.R57*	ENST00000262160	NM_005901.5	57	Cga/Tga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272336	15272337	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs771517374		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			866	51	489	0	ENST00000263388.2:c.6102dup	p.Gly2035ArgfsTer60	p.G2035Rfs*60	ENST00000263388	NM_000435.2	2034	-/C																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15308383	15308383	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			800	148	467	0	ENST00000263388.2:c.125del	p.Pro42LeufsTer194	p.P42Lfs*194	ENST00000263388	NM_000435.2	42	cCt/ct																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278055	18278055	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781265051		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	103	398	0	ENST00000222254.8:c.1675C>T	p.Arg559Cys	p.R559C	ENST00000222254	NM_005027.3	559	Cgc/Tgc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210502	2210502	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			739	124	480	0	ENST00000398665.3:c.1113del	p.Met372TrpfsTer15	p.M372Wfs*15	ENST00000398665	NM_032482.2	370	gCc/gc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753149	42753151	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs199960550		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			933	147	520	4	ENST00000222329.4:c.1113_1115del	p.Ser373del	p.S373del	ENST00000222329	NM_006494.2	371	tcTTCc/tcc																																																																															
RRAS	6237	MSKCC	GRCh37	19	50138844	50138844	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748655822		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			865	54	458	0	ENST00000246792.3:c.646G>A	p.Val216Ile	p.V216I	ENST00000246792	NM_006270.3	216	Gtc/Atc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909698	50909698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	131	448	0	ENST00000440232.2:c.1418C>T	p.Thr473Met	p.T473M	ENST00000440232	NM_002691.3	473	aCg/aTg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794117	242794117	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773349951		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	36	320	0	ENST00000334409.5:c.611G>A	p.Arg204His	p.R204H	ENST00000334409	NM_005018.2	204	cGc/cAc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			819	53	529	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25991736	25991736	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs530632623		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	239	383	0	ENST00000435504.4:c.506C>T	p.Ala169Val	p.A169V	ENST00000435504		169	gCg/gTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022455	31022455	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745371501		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			826	111	499	0	ENST00000375687.4:c.1940C>T	p.Pro647Leu	p.P647L	ENST00000375687	NM_015338.5	647	cCg/cTg																																																																															
SRC	6714	MSKCC	GRCh37	20	36012617	36012617	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367543238		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	254	433	0	ENST00000358208.4:c.61G>A	p.Ala21Thr	p.A21T	ENST00000358208		21	Gcc/Acc																																																																															
SRC	6714	MSKCC	GRCh37	20	36012726	36012726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			712	83	403	0	ENST00000358208.4:c.170C>T	p.Ala57Val	p.A57V	ENST00000358208		57	gCg/gTg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546620	9546620	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764351685		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	305	477	0	ENST00000353224.5:c.1402G>A	p.Glu468Lys	p.E468K	ENST00000353224	NM_177990.2	468	Gag/Aag																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546806	9546806	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			879	57	547	0	ENST00000353224.5:c.1216C>A	p.Leu406Ile	p.L406I	ENST00000353224	NM_177990.2	406	Ctc/Atc																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434181	12434182	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	146	417	0	ENST00000287820.6:c.556dup	p.Ser186LysfsTer2	p.S186Kfs*2	ENST00000287820	NM_015869.4	183	-/A																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72891538	72891538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs529764235		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1231	103	386	0	ENST00000325599.8:c.224G>A	p.Arg75His	p.R75H	ENST00000325599	NM_018130.2	75	cGc/cAc																																																																															
TET2	54790	MSKCC	GRCh37	4	106157132	106157132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	166	465	1	ENST00000380013.4:c.2033G>A	p.Gly678Asp	p.G678D	ENST00000380013	NM_001127208.2	678	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175751	112175752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	365	507	0	ENST00000257430.4:c.4463dup	p.Leu1488PhefsTer26	p.L1488Ffs*26	ENST00000257430	NM_000038.5	1487	act/acTt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047299	180047299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	120	441	0	ENST00000261937.6:c.2416G>A	p.Ala806Thr	p.A806T	ENST00000261937	NM_182925.4	806	Gca/Aca																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	142	456	7	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	108	344	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117715401	117715402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1392239785		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	100	397	0	ENST00000368508.3:c.1087dup	p.Tyr363LeufsTer25	p.Y363Lfs*25	ENST00000368508	NM_002944.2	363	tac/tTac																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997696	149997696	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749907686		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	112	350	0	ENST00000253339.5:c.2771G>A	p.Arg924Gln	p.R924Q	ENST00000253339		924	cGa/cAa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099445	157099450	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			867	109	614	1	ENST00000346085.5:c.390_395del	p.Gln130_Gln131del	p.Q130_Q131del	ENST00000346085	NM_020732.3	128	CAGCAA/-																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166770	32166770	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs947409717		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	134	425	1	ENST00000375023.3:c.4468C>T	p.Arg1490Trp	p.R1490W	ENST00000375023	NM_004557.3	1490	Cgg/Tgg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148511172	148511172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			779	148	428	0	ENST00000320356.2:c.1730C>T	p.Pro577Leu	p.P577L	ENST00000320356	NM_004456.4	577	cCg/cTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151846090	151846090	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756354376		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1015	63	479	0	ENST00000262189.6:c.12922G>A	p.Ala4308Thr	p.A4308T	ENST00000262189	NM_170606.2	4308	Gcc/Acc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	107	390	0	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
MYC	4609	MSKCC	GRCh37	8	128751151	128751151	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1476455361		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			809	154	464	0	ENST00000377970.2:c.688G>A	p.Ala230Thr	p.A230T	ENST00000377970	NM_002467.4	230	Gcc/Acc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141551407	141551408	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			772	114	424	0	ENST00000220592.5:c.1889_1890delinsAT	p.Arg630His	p.R630H	ENST00000220592	NM_012154.3	630	cGC/cAT																																																																															
ABL1	25	MSKCC	GRCh37	9	133760723	133760723	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1423362935		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	148	448	0	ENST00000318560.5:c.3046C>T	p.Arg1016Cys	p.R1016C	ENST00000318560	NM_005157.4	1016	Cgc/Tgc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137328441	137328441	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1306245171		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	45	459	1	ENST00000481739.1:c.1370C>T	p.Ala457Val	p.A457V	ENST00000481739	NM_002957.4	457	gCg/gTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400023	139400023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			790	158	479	0	ENST00000277541.6:c.4325del	p.Pro1442ArgfsTer3	p.P1442Rfs*3	ENST00000277541	NM_017617.3	1442	cCg/cg																																																																															
MTAP	4507	MSKCC	GRCh37	9	21854745	21854745	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	71	461	1	ENST00000380172.4:c.571del	p.Ala191ArgfsTer6	p.A191Rfs*6	ENST00000380172	NM_002451.3	189	tGg/tg																																																																															
TEK	7010	MSKCC	GRCh37	9	27197522	27197522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	69	404	0	ENST00000380036.4:c.1834G>A	p.Val612Met	p.V612M	ENST00000380036	NM_000459.3	612	Gtg/Atg																																																																															
ARAF	369	MSKCC	GRCh37	X	47430797	47430797	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1168869454		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	163	254	0	ENST00000377045.4:c.1762C>T	p.Arg588Cys	p.R588C	ENST00000377045	NM_001654.4	588	Cgc/Tgc																																																																															
AR	367	MSKCC	GRCh37	X	66931328	66931328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	138	292	0	ENST00000374690.3:c.1970C>T	p.Thr657Ile	p.T657I	ENST00000374690	NM_000044.3	657	aCc/aTc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11264648	11264648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	122	426	0	ENST00000361445.4:c.3914C>T	p.Ala1305Val	p.A1305V	ENST00000361445	NM_004958.3	1305	gCc/gTc																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551675	150551675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			735	127	442	0	ENST00000369026.2:c.332T>C	p.Met111Thr	p.M111T	ENST00000369026	NM_021960.4	111	aTg/aCg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849915	156849915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	147	404	0	ENST00000524377.1:c.2171G>A	p.Gly724Asp	p.G724D	ENST00000524377	NM_002529.3	724	gGc/gAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023566	27023566	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	48	354	0	ENST00000324856.7:c.672del	p.Ala226ProfsTer6	p.A226Pfs*6	ENST00000324856	NM_006015.4	224	ccG/cc																																																																															
ATM	472	MSKCC	GRCh37	11	108186761	108186761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	126	427	0	ENST00000278616.4:c.6119C>T	p.Ala2040Val	p.A2040V	ENST00000278616	NM_000051.3	2040	gCa/gTa																																																																															
ATM	472	MSKCC	GRCh37	11	108188239	108188239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	38	300	0	ENST00000278616.4:c.6338C>T	p.Thr2113Ile	p.T2113I	ENST00000278616	NM_000051.3	2113	aCt/aTt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946233	71946233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	182	535	0	ENST00000298229.2:c.2489G>T	p.Gly830Val	p.G830V	ENST00000298229	NM_001567.3	830	gGc/gTc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94911914	94911914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	109	372	1	ENST00000536441.1:c.1016C>T	p.Ala339Val	p.A339V	ENST00000536441	NM_144665.3	339	gCc/gTc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871090	12871090	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			749	163	469	0	ENST00000228872.4:c.317G>T	p.Ser106Ile	p.S106I	ENST00000228872	NM_004064.3	106	aGc/aTc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18473938	18473938	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	61	263	0	ENST00000266497.5:c.1180G>C	p.Glu394Gln	p.E394Q	ENST00000266497		394	Gaa/Caa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434052	49434052	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	165	520	0	ENST00000301067.7:c.7501G>T	p.Gly2501Trp	p.G2501W	ENST00000301067	NM_003482.3	2501	Ggg/Tgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914541	32914541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			727	40	482	0	ENST00000380152.3:c.6052del	p.Ser2018ValfsTer22	p.S2018Vfs*22	ENST00000380152		2017	Aaa/aa																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68353879	68353879	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	66	462	0	ENST00000487270.1:c.714G>T	p.Glu238Asp	p.E238D	ENST00000487270	NM_133509.3	238	gaG/gaT																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477124	67477124	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	141	469	0	ENST00000327367.4:c.931A>C	p.Ser311Arg	p.S311R	ENST00000327367	NM_005902.3	311	Agc/Cgc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90630678	90630678	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	78	490	0	ENST00000330062.3:c.808T>G	p.Phe270Val	p.F270V	ENST00000330062	NM_002168.2	270	Ttt/Gtt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644758	67644758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			850	48	487	0	ENST00000264010.4:c.23C>T	p.Ala8Val	p.A8V	ENST00000264010	NM_006565.3	8	gCc/gTc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15995324	15995324	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	37	492	0	ENST00000268712.3:c.2869T>C	p.Tyr957His	p.Y957H	ENST00000268712	NM_006311.3	957	Tat/Cat																																																																															
NF1	4763	MSKCC	GRCh37	17	29587533	29587533	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	31	366	0	ENST00000358273.4:c.4577G>A	p.Arg1526Lys	p.R1526K	ENST00000358273	NM_001042492.2	1526	aGg/aAg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37882823	37882823	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	38	436	0	ENST00000269571.5:c.2881A>G	p.Ile961Val	p.I961V	ENST00000269571		961	Att/Gtt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532552	63532552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	62	499	0	ENST00000307078.5:c.2027C>T	p.Ala676Val	p.A676V	ENST00000307078	NM_004655.3	676	gCc/gTc																																																																															
AKT2	208	MSKCC	GRCh37	19	40743902	40743902	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763951605		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	123	441	0	ENST00000392038.2:c.805C>T	p.Arg269Trp	p.R269W	ENST00000392038	NM_001626.4	269	Cgg/Tgg																																																																															
INSR	3643	MSKCC	GRCh37	19	7167978	7167978	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	136	361	1	ENST00000302850.5:c.1610+1G>A		p.X537_splice	ENST00000302850	NM_000208.2	537																																																																																
SF3B1	23451	MSKCC	GRCh37	2	198268322	198268322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	91	314	0	ENST00000335508.6:c.1706C>A	p.Pro569Gln	p.P569Q	ENST00000335508	NM_012433.2	569	cCa/cAa																																																																															
IDH1	3417	MSKCC	GRCh37	2	209104602	209104602	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	242	346	0	ENST00000345146.2:c.976T>A	p.Ser326Thr	p.S326T	ENST00000345146	NM_005896.2	326	Tcc/Acc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31387053	31387054	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			821	112	436	0	ENST00000328111.2:c.1683dup	p.Lys562GlnfsTer21	p.K562Qfs*21	ENST00000328111	NM_006892.3	560	gcc/gCcc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733289	40733289	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	117	471	0	ENST00000373198.4:c.3517T>A	p.Cys1173Ser	p.C1173S	ENST00000373198	NM_133170.3	1173	Tgt/Agt																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29095922	29095922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	180	386	0	ENST00000328354.6:c.912G>A	p.Met304Ile	p.M304I	ENST00000328354	NM_007194.3	304	atG/atA																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138409861	138409861	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	105	403	0	ENST00000289153.2:c.2017T>A	p.Phe673Ile	p.F673I	ENST00000289153	NM_006219.2	673	Ttt/Att																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63973961	63973961	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1057	134	453	0	ENST00000295900.6:c.1322T>C	p.Val441Ala	p.V441A	ENST00000295900	NM_000333.3	441	gTa/gCa																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427787	72427787	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	699	452	0	ENST00000477973.2:c.701C>T	p.Pro235Ser	p.P235S	ENST00000477973	NM_012234.5	235	Ccc/Tcc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143324090	143324090	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs147703982		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	25	255	0	ENST00000262992.4:c.372+1G>A		p.X124_splice	ENST00000262992	NM_001101669.1	124																																																																																
ALB	213	MSKCC	GRCh37	4	74281976	74281976	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77514449		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	25	344	0	ENST00000295897.4:c.1195G>A	p.Asp399Asn	p.D399N	ENST00000295897	NM_000477.5	399	Gat/Aat																																																																															
TERT	7015	MSKCC	GRCh37	5	1295585	1295585	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	155	508	0				ENST00000310581	NM_198253.2																																																																																	
ARID1B	57492	MSKCC	GRCh37	6	157100445	157100454	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCGGCGGC	GGGCGGCGGC	-			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	159	242	0	ENST00000346085.5:c.1389_1398del	p.Ala464SerfsTer35	p.A464Sfs*35	ENST00000346085	NM_020732.3	461	gGGGCGGCGGCg/gg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864403	162864403	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148990138		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	37	391	0	ENST00000366898.1:c.110C>T	p.Pro37Leu	p.P37L	ENST00000366898	NM_004562.2	37	cCg/cTg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148514472	148514472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			722	40	318	1	ENST00000320356.2:c.1252C>T	p.Arg418Trp	p.R418W	ENST00000320356	NM_004456.4	418	Cgg/Tgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879078	151879080	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			849	118	483	0	ENST00000262189.6:c.5865_5867del	p.Ser1956del	p.S1956del	ENST00000262189	NM_170606.2	1955	tcTTCc/tcc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399931	139399931	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763685504		P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	136	486	0	ENST00000277541.6:c.4417G>A	p.Gly1473Ser	p.G1473S	ENST00000277541	NM_017617.3	1473	Ggc/Agc																																																																															
TEK	7010	MSKCC	GRCh37	9	27158022	27158022	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			755	95	472	0	ENST00000380036.4:c.246G>T	p.Trp82Cys	p.W82C	ENST00000380036	NM_000459.3	82	tgG/tgT																																																																															
CD274	29126	MSKCC	GRCh37	9	5462927	5462927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	164	424	0	ENST00000381577.3:c.488C>T	p.Ala163Val	p.A163V	ENST00000381577	NM_014143.3	163	gCc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0075125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	32	270	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913253	39913253	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	19	231	2	ENST00000378444.4:c.4862del	p.Pro1621GlnfsTer53	p.P1621Qfs*53	ENST00000378444	NM_001123385.1	1621	cCa/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0075141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	84	259	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0075141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	26	190	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	47	424	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114799880	114799881	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0075141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	55	265	0	ENST00000543371.1:c.549dup	p.Val184CysfsTer3	p.V184Cfs*3	ENST00000543371	NM_001198531.1	183	att/aTtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782177		P-0075146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	105	479	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0075148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	198	449	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0075148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	230	430	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40359692	40359692	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201246187		P-0075148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	185	390	0	ENST00000293328.3:c.1961G>A	p.Arg654Gln	p.R654Q	ENST00000293328	NM_012448.3	654	cGg/cAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790036	40790036	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0075148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	225	495	0	ENST00000373198.4:c.2695C>T	p.Gln899Ter	p.Q899*	ENST00000373198	NM_133170.3	899	Cag/Tag																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29099545	29099545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	204	406	0	ENST00000328354.6:c.856A>G	p.Ile286Val	p.I286V	ENST00000328354	NM_007194.3	286	Atc/Gtc																																																																															
APC	324	MSKCC	GRCh37	5	112102901	112102914	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGTAATTTCCCT	GCAGTAATTTCCCT	-			P-0075148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	176	301	0	ENST00000257430.4:c.237_250del	p.Ser79ArgfsTer55	p.S79Rfs*55	ENST00000257430	NM_000038.5	79	aGCAGTAATTTCCCT/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7579494	7579494	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			613	508	371	0	ENST00000269305.4:c.193A>T	p.Arg65Ter	p.R65*	ENST00000269305	NM_001126112.2	65	Aga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106803	27106804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1039	158	384	0	ENST00000324856.7:c.6420dup	p.Phe2141LeufsTer9	p.F2141Lfs*9	ENST00000324856	NM_006015.4	2138	-/C																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662248	227662248	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			992	396	461	0	ENST00000305123.5:c.1207A>T	p.Thr403Ser	p.T403S	ENST00000305123	NM_005544.2	403	Acc/Tcc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971110	21971110	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519881		P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			539	428	394	0	ENST00000304494.5:c.248A>G	p.His83Arg	p.H83R	ENST00000304494	NM_000077.4	83	cAc/cGc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100049	157100049	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1256773336		P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1031	76	503	0	ENST00000346085.5:c.986C>G	p.Ala329Gly	p.A329G	ENST00000346085	NM_020732.3	329	gCa/gGa																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62319690	62319692	+	inframe_deletion,NMD_transcript_variant	In_Frame_Del	DEL	TCT	TCT	-	rs779176651		P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1234	99	238	0	ENST00000482936.1:c.1678_1680del	p.Phe560del	p.F560del	ENST00000482936		558	aTCTtc/atc																																																																															
KDR	3791	MSKCC	GRCh37	4	55984831	55984831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			847	71	347	0	ENST00000263923.4:c.298G>A	p.Ala100Thr	p.A100T	ENST00000263923	NM_002253.2	100	Gcc/Acc																																																																															
ALK	238	MSKCC	GRCh37	2	30143471	30143471	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			681	205	272	0	ENST00000389048.3:c.55G>C	p.Val19Leu	p.V19L	ENST00000389048	NM_004304.4	19	Gtg/Ctg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93973608	93973608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	204	291	1	ENST00000369303.4:c.1768C>A	p.Gln590Lys	p.Q590K	ENST00000369303	NM_004440.3	590	Caa/Aaa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046546	30046546	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			841	80	372	0	ENST00000331968.5:c.2637G>T	p.Gln879His	p.Q879H	ENST00000331968	NM_002742.2	879	caG/caT																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256441	16256441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1028	128	350	0	ENST00000375759.3:c.3706G>A	p.Asp1236Asn	p.D1236N	ENST00000375759	NM_015001.2	1236	Gat/Aat																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370789	55370789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			813	175	344	0	ENST00000297316.4:c.91C>G	p.Pro31Ala	p.P31A	ENST00000297316	NM_022454.3	31	Ccc/Gcc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40486021	40486021	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			736	302	263	0	ENST00000264657.5:c.844A>T	p.Lys282Ter	p.K282*	ENST00000264657	NM_139276.2	282	Aag/Tag																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041669	14041670	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1052	88	376	0	ENST00000311895.7:c.2218dup	p.Arg740ProfsTer21	p.R740Pfs*21	ENST00000311895	NM_005236.2	739	ggc/ggCc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58678127	58678127	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1181	219	352	0	ENST00000305921.3:c.352G>T	p.Glu118Ter	p.E118*	ENST00000305921	NM_003620.3	118	Gag/Tag																																																																															
GAB1	2549	MSKCC	GRCh37	4	144359541	144359542	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			730	96	426	0	ENST00000262994.4:c.986dup	p.Gln330ThrfsTer24	p.Q330Tfs*24	ENST00000262994	NM_002039.3	328	ttg/ttGg																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023434	33023434	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			823	48	359	0	ENST00000300177.4:c.543C>G	p.Ile181Met	p.I181M	ENST00000300177	NM_001191322.1	181	atC/atG																																																																															
FLCN	201163	MSKCC	GRCh37	17	17118304	17118304	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			573	219	329	0	ENST00000285071.4:c.1533G>A	p.Trp511Ter	p.W511*	ENST00000285071	NM_144997.5	511	tgG/tgA																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128051296	128051296	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			842	456	360	0	ENST00000285398.2:c.29-2A>T		p.X10_splice	ENST00000285398	NM_000122.1	10																																																																																
CSF1R	1436	MSKCC	GRCh37	5	149460471	149460471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1157	101	454	0	ENST00000286301.3:c.166C>T	p.Pro56Ser	p.P56S	ENST00000286301	NM_005211.3	56	Cct/Tct																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150902561	150902561	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			990	66	270	0	ENST00000271640.5:c.379G>C	p.Asp127His	p.D127H	ENST00000271640	NM_001145415.1	127	Gat/Cat																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198260847	198260847	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			678	148	342	0	ENST00000335508.6:c.3472A>G	p.Ile1158Val	p.I1158V	ENST00000335508	NM_012433.2	1158	Att/Gtt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375031	45375031	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			652	57	394	0	ENST00000262160.6:c.812C>A	p.Pro271His	p.P271H	ENST00000262160	NM_005901.5	271	cCt/cAt																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029056	14029056	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			561	400	378	0	ENST00000311895.7:c.1267T>A	p.Tyr423Asn	p.Y423N	ENST00000311895	NM_005236.2	423	Tat/Aat																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128051115	128051115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			897	468	331	0	ENST00000285398.2:c.208G>T	p.Asp70Tyr	p.D70Y	ENST00000285398	NM_000122.1	70	Gac/Tac																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562784	21562784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			790	207	329	0	ENST00000382592.4:c.1135G>A	p.Asp379Asn	p.D379N	ENST00000382592	NM_014572.2	379	Gac/Aac																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864978	57864978	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			901	352	386	0	ENST00000228682.2:c.2455G>T	p.Gly819Trp	p.G819W	ENST00000228682	NM_005269.2	819	Ggg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098482	11098482	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			529	453	270	0	ENST00000344626.4:c.1002del	p.Gln335SerfsTer76	p.Q335Sfs*76	ENST00000344626	NM_003072.3	334	Ggg/gg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857921	9857921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1018	89	446	0	ENST00000330684.3:c.3480G>T	p.Lys1160Asn	p.K1160N	ENST00000330684	NM_001134407.1	1160	aaG/aaT																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862885	9862885	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			679	209	285	0	ENST00000330684.3:c.2418G>C	p.Glu806Asp	p.E806D	ENST00000330684	NM_001134407.1	806	gaG/gaC																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89156911	89156911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			463	335	380	1	ENST00000336596.2:c.13C>A	p.Leu5Ile	p.L5I	ENST00000336596	NM_005233.5	5	Ctc/Atc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69031699	69031699	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			565	131	396	0	ENST00000288368.4:c.3454C>G	p.His1152Asp	p.H1152D	ENST00000288368	NM_024870.2	1152	Cat/Gat																																																																															
FH	2271	MSKCC	GRCh37	1	241682932	241682932	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1155	453	358	0	ENST00000366560.3:c.91G>T	p.Ala31Ser	p.A31S	ENST00000366560	NM_000143.3	31	Gcg/Tcg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099013	27099014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			871	351	370	0	ENST00000324856.7:c.3433dup	p.Gln1145ProfsTer48	p.Q1145Pfs*48	ENST00000324856	NM_006015.4	1143	-/C																																																																															
MET	4233	MSKCC	GRCh37	7	116340324	116340324	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			583	57	260	0	ENST00000397752.3:c.1186C>G	p.His396Asp	p.H396D	ENST00000397752	NM_000245.2	396	Cac/Gac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0069781-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	17	380	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069781-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			312	18	240	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435482	56435482	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778996473		P-0069781-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	16	308	0	ENST00000407977.2:c.1655G>A	p.Arg552His	p.R552H	ENST00000407977		552	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520001		P-0069781-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			338	11	356	1	ENST00000269305.4:c.645T>G	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agG																																																																															
MGA	23269	MSKCC	GRCh37	15	42052636	42052636	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1054243525		P-0073030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	26	240	0	ENST00000219905.7:c.7307G>A	p.Arg2436His	p.R2436H	ENST00000219905	NM_001164273.1	2436	cGt/cAt																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170013720	170013720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	20	234	0	ENST00000295797.4:c.1439G>A	p.Arg480His	p.R480H	ENST00000295797	NM_002740.5	480	cGc/cAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248450	212248450	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1480034665		P-0073030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	26	269	0	ENST00000342788.4:c.3817C>T	p.Arg1273Trp	p.R1273W	ENST00000342788	NM_005235.2	1273	Cgg/Tgg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800519	32800519	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376467259		P-0073030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	13	247	0	ENST00000374899.4:c.1028G>A	p.Arg343His	p.R343H	ENST00000374899	NM_018833.2	343	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0073030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			89	45	168	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222895	5222895	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369041852		P-0073030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	20	170	2	ENST00000357368.4:c.2908C>T	p.Arg970Trp	p.R970W	ENST00000357368	NM_002850.3	970	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0073211-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			71	12	194	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111854391		P-0073456-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	77	339	0	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0073456-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	30	275	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30315340	30315340	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0073456-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	49	254	0	ENST00000322652.5:c.1025G>A	p.Arg342Lys	p.R342K	ENST00000322652	NM_015355.2	342	aGg/aAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099003	27099004	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073456-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	102	391	0	ENST00000324856.7:c.3420dup	p.Met1141TyrfsTer52	p.M1141Yfs*52	ENST00000324856	NM_006015.4	1140	tct/tcTt																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031930	26031931	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0073820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	212	496	0	ENST00000244661.2:c.358_359del	p.Ile120TyrfsTer27	p.I120Yfs*27	ENST00000244661	NM_003537.3	120	ATt/t																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0074309-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			753	42	584	0	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-	rs397517086		P-0074309-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			609	36	470	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374938	45374938	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0074309-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			639	23	0	0	ENST00000262160.6:c.905T>G	p.Phe302Cys	p.F302C	ENST00000262160	NM_005901.5	302	tTt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0074931-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	26	355	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0074931-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	18	418	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970970	21970971	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AC			P-0074931-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	29	553	1	ENST00000304494.5:c.387_388delinsGT	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taCCtg/taGTtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0074935-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	20	324	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0074936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	10	323	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0074936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			890	23	549	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175957539	175957539	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	7	0	0	ENST00000367669.3:c.1857C>G	p.Asp619Glu	p.D619E	ENST00000367669	NM_022457.5	619	gaC/gaG																																																																															
AKT1	207	MSKCC	GRCh37	14	105239342	105239342	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0074936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			860	20	0	0	ENST00000349310.3:c.1045T>G	p.Phe349Val	p.F349V	ENST00000349310	NM_001014432.1	349	Ttc/Gtc																																																																															
GNB1	2782	MSKCC	GRCh37	1	1735883	1735884	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0074936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	18	0	0	ENST00000378609.4:c.404dup	p.Ser136GlufsTer3	p.S136Efs*3	ENST00000378609	NM_002074.3	135	gtg/gtTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	45	338	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156597	55156597	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	21	321	0	ENST00000257290.5:c.2998C>A	p.Leu1000Met	p.L1000M	ENST00000257290	NM_006206.4	1000	Ctg/Atg																																																																															
TP63	8626	MSKCC	GRCh37	3	189612157	189612157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	40	333	0	ENST00000264731.3:c.1909C>T	p.Arg637Cys	p.R637C	ENST00000264731	NM_003722.4	637	Cgt/Tgt																																																																															
KDR	3791	MSKCC	GRCh37	4	55946328	55946328	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0074944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	12	263	0	ENST00000263923.4:c.3851G>T	p.Gly1284Val	p.G1284V	ENST00000263923	NM_002253.2	1284	gGa/gTa																																																																															
KDR	3791	MSKCC	GRCh37	4	55970930	55970930	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	27	271	0	ENST00000263923.4:c.1867G>T	p.Asp623Tyr	p.D623Y	ENST00000263923	NM_002253.2	623	Gac/Tac																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811771	102811771	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	17	335	0	ENST00000307046.8:c.413C>A	p.Pro138Gln	p.P138Q	ENST00000307046	NM_001111285.1	138	cCa/cAa																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588171	69588171	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	17	266	0	ENST00000168712.1:c.527G>C	p.Gly176Ala	p.G176A	ENST00000168712	NM_002007.2	176	gGc/gCc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39262445	39262445	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			83	25	275	0	ENST00000402219.2:c.982G>T	p.Gly328Cys	p.G328C	ENST00000402219	NM_005633.3	328	Ggc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441818	49441818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	24	250	0	ENST00000301067.7:c.4166G>T	p.Gly1389Val	p.G1389V	ENST00000301067	NM_003482.3	1389	gGg/gTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2106225	2106225	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	34	200	0	ENST00000219476.3:c.628G>T	p.Ala210Ser	p.A210S	ENST00000219476	NM_000548.3	210	Gcg/Tcg																																																																															
HGF	3082	MSKCC	GRCh37	7	81374361	81374361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	12	215	0	ENST00000222390.5:c.701G>T	p.Arg234Leu	p.R234L	ENST00000222390	NM_000601.4	234	cGc/cTc																																																																															
TET1	80312	MSKCC	GRCh37	10	70451011	70451011	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	18	298	0	ENST00000373644.4:c.5851G>T	p.Asp1951Tyr	p.D1951Y	ENST00000373644	NM_030625.2	1951	Gac/Tac																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78897385	78897385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	47	372	0	ENST00000306801.3:c.2720G>T	p.Gly907Val	p.G907V	ENST00000306801	NM_020761.2	907	gGc/gTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877355	40877355	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	19	281	0	ENST00000373198.4:c.2341C>A	p.Leu781Met	p.L781M	ENST00000373198	NM_133170.3	781	Ctg/Atg																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230561377	230561377	+	5_prime_UTR_variant	5'UTR	SNP	C	C	A			P-0074944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	20	318	0	ENST00000391860.1:c.-48G>T		p.*16*	ENST00000391860	NM_001258311.1																																																																																	
FAT1	2195	MSKCC	GRCh37	4	187539260	187539260	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	12	297	0	ENST00000441802.2:c.8480G>T	p.Arg2827Ile	p.R2827I	ENST00000441802	NM_005245.3	2827	aGa/aTa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16056673	16056673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			83	13	178	0	ENST00000268712.3:c.769C>T	p.Leu257Phe	p.L257F	ENST00000268712	NM_006311.3	257	Ctt/Ttt																																																																															
IRF4	3662	MSKCC	GRCh37	6	393175	393176	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0074944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	18	226	0	ENST00000380956.4:c.23_24delinsTT	p.Arg8Leu	p.R8L	ENST00000380956	NM_001195286.1	8	cGA/cTT																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117746	115117746	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0074944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	20	253	0	ENST00000257566.3:c.689G>A	p.Trp230Ter	p.W230*	ENST00000257566	NM_016569.3	230	tGg/tAg																																																																															
TEK	7010	MSKCC	GRCh37	9	27205061	27205061	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0074944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	13	263	0	ENST00000380036.4:c.2362G>A	p.Val788Met	p.V788M	ENST00000380036	NM_000459.3	788	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0074946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	157	240	1	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419987	41419987	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376239850		P-0074946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	63	306	0	ENST00000373198.4:c.334C>T	p.Arg112Cys	p.R112C	ENST00000373198	NM_133170.3	112	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0074946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	118	227	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15300087	15300087	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs147782884		P-0074946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	50	267	0	ENST00000263388.2:c.1189A>G	p.Ile397Val	p.I397V	ENST00000263388	NM_000435.2	397	Atc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577505	7577505	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	117	242	0	ENST00000269305.4:c.776del	p.Asp259AlafsTer86	p.D259Afs*86	ENST00000269305	NM_001126112.2	259	gAc/gc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046617	30046617	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	37	227	1	ENST00000331968.5:c.2566G>T	p.Gly856Trp	p.G856W	ENST00000331968	NM_002742.2	856	Ggg/Tgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710969	114710969	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0074946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	76	123	0	ENST00000543371.1:c.193G>T	p.Glu65Ter	p.E65*	ENST00000543371	NM_001198531.1	65	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0074951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	73	291	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112175621	112175621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0074951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	46	333	0	ENST00000257430.4:c.4330C>T	p.Gln1444Ter	p.Q1444*	ENST00000257430	NM_000038.5	1444	Caa/Taa																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115276357	115276357	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	100	228	0	ENST00000438362.2:c.971del	p.Asn324ThrfsTer15	p.N324Tfs*15	ENST00000438362	NM_001242891.1	324	aAc/ac																																																																															
PARP1	142	MSKCC	GRCh37	1	226567647	226567647	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	40	299	0	ENST00000366794.5:c.1519del	p.Ser507AlafsTer17	p.S507Afs*17	ENST00000366794	NM_001618.3	507	Agc/gc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	72	251	0	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	34	137	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																															
POLE	5426	MSKCC	GRCh37	12	133201338	133201338	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	54	313	0	ENST00000320574.5:c.6806A>G	p.Tyr2269Cys	p.Y2269C	ENST00000320574	NM_006231.2	2269	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	119	257	1	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416586	49416586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	118	357	0	ENST00000301067.7:c.16125del	p.Tyr5376ThrfsTer42	p.Y5376Tfs*42	ENST00000301067	NM_003482.3	5375	ccC/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	132	372	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489544	56489544	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761002408		P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	53	304	0	ENST00000267101.3:c.2009G>A	p.Arg670Gln	p.R670Q	ENST00000267101	NM_001982.3	670	cGg/cAg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557771	21557771	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs575902148		P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	62	301	0	ENST00000382592.4:c.2074G>A	p.Ala692Thr	p.A692T	ENST00000382592	NM_014572.2	692	Gcc/Acc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562325	21562325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	62	274	0	ENST00000382592.4:c.1594G>A	p.Asp532Asn	p.D532N	ENST00000382592	NM_014572.2	532	Gac/Aac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061011	38061011	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	30	224	0	ENST00000250448.2:c.978del	p.Ala329ProfsTer21	p.A329Pfs*21	ENST00000250448	NM_004496.3	326	ccC/cc																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	132	295	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473723	67473723	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223740		P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	19	254	0	ENST00000327367.4:c.803G>A	p.Arg268His	p.R268H	ENST00000327367	NM_005902.3	268	cGc/cAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	96	288	0	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821482	72821482	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778895240		P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	36	309	0	ENST00000268489.5:c.10693G>A	p.Ala3565Thr	p.A3565T	ENST00000268489	NM_006885.3	3565	Gcc/Acc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81946227	81946227	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1295648437		P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	31	224	0	ENST00000359376.3:c.1960G>A	p.Gly654Arg	p.G654R	ENST00000359376	NM_002661.3	654	Gga/Aga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	76	393	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216587	7216587	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	122	348	1	ENST00000380728.2:c.748C>A	p.Leu250Met	p.L250M	ENST00000380728		250	Ctg/Atg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979986	7979987	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs746723399		P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	86	292	0	ENST00000319144.4:c.1350dup	p.Leu451AlafsTer27	p.L451Afs*27	ENST00000319144	NM_001139.2	450	-/G																																																																															
CARM1	10498	MSKCC	GRCh37	19	11027128	11027128	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199572188		P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	85	216	1	ENST00000327064.4:c.893C>T	p.Thr298Met	p.T298M	ENST00000327064	NM_199141.1	298	aCg/aTg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615796	1615796	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs2074888		P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	79	236	0	ENST00000344749.5:c.1475C>T	p.Ala492Val	p.A492V	ENST00000344749	NM_001136139.2	492	gCg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210725	36210725	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	71	260	0	ENST00000222270.7:c.481del	p.Leu161PhefsTer6	p.L161Ffs*6	ENST00000222270	NM_014727.1	159	aCc/ac																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661978	227661978	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780720173		P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	92	335	0	ENST00000305123.5:c.1477C>T	p.Arg493Cys	p.R493C	ENST00000305123	NM_005544.2	493	Cgc/Tgc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47656949	47656949	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267607947		P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	72	217	0	ENST00000233146.2:c.1145G>A	p.Arg382His	p.R382H	ENST00000233146	NM_000251.2	382	cGt/cAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714494	40714494	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs1397520284		P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	26	300	0	ENST00000373198.4:c.3904-1G>T		p.X1302_splice	ENST00000373198	NM_133170.3	1302																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41419951	41419951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	48	284	0	ENST00000373198.4:c.370G>A	p.Val124Met	p.V124M	ENST00000373198	NM_133170.3	124	Gtg/Atg																																																																															
VHL	7428	MSKCC	GRCh37	3	10183863	10183863	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs869025631		P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	57	232	0	ENST00000256474.2:c.332G>A	p.Ser111Asn	p.S111N	ENST00000256474	NM_000551.3	111	aGc/aAc																																																																															
TP63	8626	MSKCC	GRCh37	3	189526176	189526176	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747354750		P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	68	376	0	ENST00000264731.3:c.440C>T	p.Ser147Leu	p.S147L	ENST00000264731	NM_003722.4	147	tCg/tTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	163	281	6	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	96	352	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
KDR	3791	MSKCC	GRCh37	4	55946268	55946268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	29	264	1	ENST00000263923.4:c.3911G>A	p.Gly1304Asp	p.G1304D	ENST00000263923	NM_002253.2	1304	gGc/gAc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs758740142		P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	63	283	4	ENST00000265335.6:c.2801del	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324674	31324675	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			69	38	105	0	ENST00000412585.2:c.133dup	p.Arg45ProfsTer54	p.R45Pfs*54	ENST00000412585	NM_005514.6	45	cgc/cCgc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	177	352	0	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900080	151900081	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	57	315	0	ENST00000262189.6:c.4030dup	p.Ile1344AsnfsTer11	p.I1344Nfs*11	ENST00000262189	NM_170606.2	1344	ata/aAta																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401769	139401769	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766644919		P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	98	265	0	ENST00000277541.6:c.3631C>T	p.Arg1211Trp	p.R1211W	ENST00000277541	NM_017617.3	1211	Cgg/Tgg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	30	232	0	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11298563	11298563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	66	376	0	ENST00000361445.4:c.1898C>T	p.Ser633Phe	p.S633F	ENST00000361445	NM_004958.3	633	tCc/tTc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104357002	104357002	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	61	212	0	ENST00000369902.3:c.862A>G	p.Ser288Gly	p.S288G	ENST00000369902	NM_016169.3	288	Agc/Ggc																																																																															
ATM	472	MSKCC	GRCh37	11	108150236	108150236	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	58	255	0	ENST00000278616.4:c.3303G>T	p.Lys1101Asn	p.K1101N	ENST00000278616	NM_000051.3	1101	aaG/aaT																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64132822	64132822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	75	321	1	ENST00000334205.4:c.956G>A	p.Arg319Gln	p.R319Q	ENST00000334205	NM_003942.2	319	cGg/cAg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022564	12022564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	188	382	0	ENST00000396373.4:c.670C>T	p.His224Tyr	p.H224Y	ENST00000396373	NM_001987.4	224	Cac/Tac																																																																															
CDK8	1024	MSKCC	GRCh37	13	26828875	26828875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	64	266	0	ENST00000381527.3:c.97G>T	p.Gly33Cys	p.G33C	ENST00000381527	NM_001260.1	33	Ggt/Tgt																																																																															
AKT1	207	MSKCC	GRCh37	14	105238773	105238773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs531850885		P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	69	292	0	ENST00000349310.3:c.1189G>A	p.Glu397Lys	p.E397K	ENST00000349310	NM_001014432.1	397	Gag/Aag																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544321	86544321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	25	261	0	ENST00000262426.4:c.146C>T	p.Pro49Leu	p.P49L	ENST00000262426	NM_001451.2	49	cCg/cTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349477	89349477	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	85	312	0	ENST00000301030.4:c.3473C>G	p.Ala1158Gly	p.A1158G	ENST00000301030	NM_001256183.1	1158	gCc/gGc																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38785042	38785043	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	84	256	0	ENST00000348513.6:c.1230dup	p.Glu411ArgfsTer11	p.E411Rfs*11	ENST00000348513	NM_003079.4	410	-/A																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440769	56440769	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	69	314	0	ENST00000407977.2:c.451-2A>G		p.X151_splice	ENST00000407977		151																																																																																
GPS2	2874	MSKCC	GRCh37	17	7217266	7217266	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	105	295	0	ENST00000380728.2:c.439G>C	p.Ala147Pro	p.A147P	ENST00000380728		147	Gct/Cct																																																																															
ERF	2077	MSKCC	GRCh37	19	42752892	42752892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	61	300	0	ENST00000222329.4:c.1372C>A	p.Arg458Ser	p.R458S	ENST00000222329	NM_006494.2	458	Cgt/Agt																																																																															
ERF	2077	MSKCC	GRCh37	19	42753116	42753116	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	78	374	0	ENST00000222329.4:c.1148del	p.Pro383HisfsTer14	p.P383Hfs*14	ENST00000222329	NM_006494.2	383	cCa/ca																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872983	136872983	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	82	343	0	ENST00000241393.3:c.515T>C	p.Phe172Ser	p.F172S	ENST00000241393	NM_003467.2	172	tTc/tCc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171637	36171637	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	140	297	0	ENST00000300305.3:c.928A>G	p.Met310Val	p.M310V	ENST00000300305		310	Atg/Gtg																																																																															
TP63	8626	MSKCC	GRCh37	3	189582068	189582068	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	59	379	0	ENST00000264731.3:c.630del	p.Ile211SerfsTer5	p.I211Sfs*5	ENST00000264731	NM_003722.4	209	tgC/tg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1961436	1961436	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	85	305	0	ENST00000382895.3:c.3224G>A	p.Trp1075Ter	p.W1075*	ENST00000382895	NM_133330.2	1075	tGg/tAg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230861	66230861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	42	301	0	ENST00000273854.3:c.2110G>A	p.Val704Met	p.V704M	ENST00000273854	NM_004439.5	704	Gtg/Atg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149510139	149510139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1211844128		P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	61	193	0	ENST00000261799.4:c.1330C>T	p.Pro444Ser	p.P444S	ENST00000261799	NM_002609.3	444	Ccg/Tcg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184170	56184170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	108	286	0	ENST00000399503.3:c.4375G>A	p.Ala1459Thr	p.A1459T	ENST00000399503	NM_005921.1	1459	Gct/Act																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056176	26056176	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202109685		P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	102	298	0	ENST00000343677.2:c.481C>T	p.Pro161Ser	p.P161S	ENST00000343677	NM_005319.3	161	Ccg/Tcg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992706	68992707	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	46	311	0	ENST00000288368.4:c.1675dup	p.Leu559ProfsTer9	p.L559Pfs*9	ENST00000288368	NM_024870.2	557	-/C																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401183	139401183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	72	310	0	ENST00000277541.6:c.3886C>T	p.Arg1296Cys	p.R1296C	ENST00000277541	NM_017617.3	1296	Cgt/Tgt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933770	39933770	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	66	323	0	ENST00000378444.4:c.829C>A	p.Pro277Thr	p.P277T	ENST00000378444	NM_001123385.1	277	Ccg/Acg																																																																															
ARAF	369	MSKCC	GRCh37	X	47424499	47424499	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	97	322	0	ENST00000377045.4:c.419T>C	p.Val140Ala	p.V140A	ENST00000377045	NM_001654.4	140	gTc/gCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0074998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	56	214	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0074998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	106	272	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112111325	112111325	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs397514031		P-0074998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	63	76	0	ENST00000257430.4:c.423-1G>A		p.X141_splice	ENST00000257430	NM_000038.5	141																																																																																
APC	324	MSKCC	GRCh37	5	112170862	112170862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1060503318		P-0074998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	91	176	0	ENST00000257430.4:c.1958G>A	p.Arg653Lys	p.R653K	ENST00000257430	NM_000038.5	653	aGg/aAg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372146	55372146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	56	387	1	ENST00000297316.4:c.836C>T	p.Ala279Val	p.A279V	ENST00000297316	NM_022454.3	279	gCg/gTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39930412	39930412	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs758860806		P-0074998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	45	304	0	ENST00000378444.4:c.3052C>T	p.Arg1018Cys	p.R1018C	ENST00000378444	NM_001123385.1	1018	Cgt/Tgt																																																																															
CDK8	1024	MSKCC	GRCh37	13	26959396	26959396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	225	257	0	ENST00000381527.3:c.563C>A	p.Ala188Glu	p.A188E	ENST00000381527	NM_001260.1	188	gCa/gAa																																																																															
EP300	2033	MSKCC	GRCh37	22	41548333	41548333	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0075002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	60	298	0	ENST00000263253.7:c.3122del	p.Pro1041GlnfsTer18	p.P1041Qfs*18	ENST00000263253	NM_001429.3	1041	Cca/ca																																																																															
HRAS	3265	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28933406		P-0075029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	125	453	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	104	443	0	ENST00000250448.2:c.655C>T	p.Arg219Cys	p.R219C	ENST00000250448	NM_004496.3	219	Cgc/Tgc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618630	37618631	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0075029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	115	506	0	ENST00000447079.4:c.307_308del	p.Asp103SerfsTer23	p.D103Sfs*23	ENST00000447079	NM_015083.1	102	tcAGat/tcat																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619339	37619349	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCGGTCTCT	AAGCGGTCTCT	-			P-0075029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	97	456	0	ENST00000447079.4:c.1015_1025del	p.Lys339GlufsTer8	p.K339Efs*8	ENST00000447079	NM_015083.1	339	AAGCGGTCTCTg/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0075033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	93	369	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15978871	15978871	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	92	324	0	ENST00000268712.3:c.3647G>T	p.Ser1216Ile	p.S1216I	ENST00000268712	NM_006311.3	1216	aGt/aTt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061214	38061233	+	frameshift_variant	Frame_Shift_Del	DEL	AGCAGCCGTTCTCGAACATG	AGCAGCCGTTCTCGAACATG	T			P-0075033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	77	430	0	ENST00000250448.2:c.756_775delinsA	p.Asn252LysfsTer63	p.N252Kfs*63	ENST00000250448	NM_004496.3	252	aaCATGTTCGAGAACGGCTGCTac/aaAac																																																																															
CDH1	999	MSKCC	GRCh37	16	68847276	68847276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075034-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	79	362	0	ENST00000261769.5:c.1198G>A	p.Asp400Asn	p.D400N	ENST00000261769	NM_004360.3	400	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882025		P-0075034-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	110	428	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																															
CDH1	999	MSKCC	GRCh37	16	68845699	68845700	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0075034-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	78	362	0	ENST00000261769.5:c.946dup	p.Met316AsnfsTer5	p.M316Nfs*5	ENST00000261769	NM_004360.3	315	-/A																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5211644	5211644	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075034-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	81	334	0	ENST00000357368.4:c.5191G>C	p.Glu1731Gln	p.E1731Q	ENST00000357368	NM_002850.3	1731	Gag/Cag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033260	69033260	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075034-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	66	332	0	ENST00000288368.4:c.3700C>T	p.Gln1234Ter	p.Q1234*	ENST00000288368	NM_024870.2	1234	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0075064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	18	367	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762108866		P-0075064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	228	415	1	ENST00000268489.5:c.10215dup	p.Gly3406ArgfsTer25	p.G3406Rfs*25	ENST00000268489	NM_006885.3	3405	-/C																																																																															
FLT3	2322	MSKCC	GRCh37	13	28622419	28622419	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776699712		P-0075064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	150	323	0	ENST00000241453.7:c.1198G>A	p.Gly400Arg	p.G400R	ENST00000241453	NM_004119.2	400	Gga/Aga																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98240450	98240450	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370354759		P-0075064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	23	360	2	ENST00000331920.6:c.1234G>A	p.Ala412Thr	p.A412T	ENST00000331920	NM_000264.3	412	Gca/Aca																																																																															
KDR	3791	MSKCC	GRCh37	4	55961056	55961056	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1312670638		P-0075064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	192	354	0	ENST00000263923.4:c.2884C>T	p.Arg962Cys	p.R962C	ENST00000263923	NM_002253.2	962	Cgc/Tgc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1955068	1955068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	164	353	0	ENST00000382895.3:c.2155G>A	p.Val719Met	p.V719M	ENST00000382895	NM_133330.2	719	Gtg/Atg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927429	178927429	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1401795892		P-0075064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	155	271	0	ENST00000263967.3:c.1192C>T	p.Arg398Cys	p.R398C	ENST00000263967	NM_006218.2	398	Cgt/Tgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1294255	1294255	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1174718400		P-0075064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	176	425	0	ENST00000310581.5:c.746C>T	p.Thr249Met	p.T249M	ENST00000310581	NM_198253.2	249	aCg/aTg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40441470	40441470	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780375123		P-0075064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	140	302	0	ENST00000345506.4:c.41C>T	p.Ala14Val	p.A14V	ENST00000345506	NM_003152.3	14	gCg/gTg																																																																															
ATR	545	MSKCC	GRCh37	3	142180907	142180907	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751772547		P-0075064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	138	253	0	ENST00000350721.4:c.7067G>A	p.Arg2356His	p.R2356H	ENST00000350721	NM_001184.3	2356	cGt/cAt																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133674	41133674	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0075064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	260	393	0	ENST00000379561.5:c.1954T>A	p.Trp652Arg	p.W652R	ENST00000379561	NM_002015.3	652	Tgg/Agg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027775	48027775	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0075064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	194	340	0	ENST00000234420.5:c.2656del	p.Ile886SerfsTer20	p.I886Sfs*20	ENST00000234420	NM_000179.2	885	Aaa/aa																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345744	152345744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	141	295	0	ENST00000359321.1:c.826G>A	p.Gly276Arg	p.G276R	ENST00000359321	NM_005431.1	276	Ggg/Agg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187330	38187330	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0075064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	29	367	0	ENST00000317025.8:c.1147C>G	p.Arg383Gly	p.R383G	ENST00000317025	NM_023034.1	383	Cga/Gga																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696734	47696734	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0075064-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	190	405	0	ENST00000347630.2:c.214A>G	p.Asn72Asp	p.N72D	ENST00000347630	NM_001007230.1	72	Aac/Gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0070749-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			147	469	355	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513337	44513337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070749-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	132	283	0	ENST00000291552.4:c.598C>T	p.Arg200Trp	p.R200W	ENST00000291552	NM_006758.2	200	Cgg/Tgg																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2647124	2647124	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0070749-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	302	257	0	ENST00000342085.4:c.1402G>C	p.Gly468Arg	p.G468R	ENST00000342085	NM_002613.4	468	Ggt/Cgt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526765	31526765	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746810149		P-0070749-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			643	101	296	0	ENST00000344624.3:c.275C>T	p.Pro92Leu	p.P92L	ENST00000344624		92	cCt/cTt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673714	30673714	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070749-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			294	370	349	0	ENST00000376406.3:c.3246G>T	p.Arg1082Ser	p.R1082S	ENST00000376406	NM_014641.2	1082	agG/agT																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259287	89259287	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070749-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	109	290	0	ENST00000336596.2:c.431A>T	p.Asp144Val	p.D144V	ENST00000336596	NM_005233.5	144	gAc/gTc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940647	49940649	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0070749-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			485	28	329	0	ENST00000296474.3:c.394_396del	p.Leu132del	p.L132del	ENST00000296474	NM_002447.2	132	CTG/-																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15971423	15971423	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070749-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			289	139	227	0	ENST00000268712.3:c.4526C>G	p.Ser1509Cys	p.S1509C	ENST00000268712	NM_006311.3	1509	tCt/tGt																																																																															
ATM	472	MSKCC	GRCh37	11	108164088	108164088	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070749-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			348	80	182	0	ENST00000278616.4:c.4660A>T	p.Asn1554Tyr	p.N1554Y	ENST00000278616	NM_000051.3	1554	Aac/Tac																																																																															
LYN	4067	MSKCC	GRCh37	8	56864647	56864647	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070749-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			708	98	259	0	ENST00000519728.1:c.610A>G	p.Ile204Val	p.I204V	ENST00000519728	NM_002350.3	204	Atc/Gtc																																																																															
KDR	3791	MSKCC	GRCh37	4	55946320	55946320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070749-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			374	25	264	0	ENST00000263923.4:c.3859C>A	p.Pro1287Thr	p.P1287T	ENST00000263923	NM_002253.2	1287	Ccc/Acc																																																																															
CBFB	865	MSKCC	GRCh37	16	67063711	67063711	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	49	289	0	ENST00000412916.2:c.160G>T	p.Glu54Ter	p.E54*	ENST00000412916		54	Gaa/Taa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224698	36224698	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	68	442	0	ENST00000222270.7:c.7085del	p.Pro2362ArgfsTer77	p.P2362Rfs*77	ENST00000222270	NM_014727.1	2362	Ccg/cg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421635	49421635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	106	390	0	ENST00000301067.7:c.14594C>T	p.Pro4865Leu	p.P4865L	ENST00000301067	NM_003482.3	4865	cCt/cTt																																																																															
CDH1	999	MSKCC	GRCh37	16	68842678	68842682	+	frameshift_variant	Frame_Shift_Del	DEL	TTATT	TTATT	A			P-0072649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	105	417	0	ENST00000261769.5:c.614_618delinsA	p.Phe205Ter	p.F205*	ENST00000261769	NM_004360.3	205	tTTATT/tA																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967207	134967207	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	57	446	2	ENST00000398015.3:c.2546G>T	p.Cys849Phe	p.C849F	ENST00000398015	NM_004441.4	849	tGt/tTt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937417	32937417	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074325-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			82	180	236	0	ENST00000380152.3:c.8078del	p.Ile2693LysfsTer4	p.I2693Kfs*4	ENST00000380152		2693	aTa/aa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715601	30715604	+	frameshift_variant	Frame_Shift_Del	DEL	GAAC	GAAC	-			P-0074325-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			248	17	234	0	ENST00000359013.4:c.1334_1337del	p.Gly445ValfsTer10	p.G445Vfs*10	ENST00000359013	NM_001024847.2	445	gGAACt/gt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206242	162206877	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATTGTACACTTGTAAATGGTTAATTGGTTACATGAATTTCACTTCCATTAAAATGTATATATGTAATAACAGTATAGTACAAGTAAAGGGTGCTTTGTAATGTGAAAAGATAAAATATTAAGTAGTTCAGGTTTATCTCATTCTGCTTTCTTTTTCACATATGTTATTTTATATATATTGGGTATGTGTTCAACATTTTGAGTGATAGAGGTATACGATTTAAAAATTAGGTAATACTGCTCTAGTTCCACGGTAACAAATCTAGAACATGGAGAGTGACTCTAACCCACAGAAAAACTTAGTATACCTTGGCTGAATAATATTGACAAACTTATTCTCAATGCCTTTATGCAAATAATGCATTTTCCAGTTCAACACAATTCCTTCATTCCCCAGAACTTTTATCTTTTGCGATCCAAACATTAATGTTTCATATCCAGCAATGATCAAATTTAAATTCTTCTGCTAGGGTTTACGTATATCTAAGCCAGTTTTACATCAATAATTGTTCTTCTGTTCTTCATTAGCATTAGAGATGGAGAGAAAACATGCTAGACTTACCCACACAAGGCAGGGAGTAGCCAAGTTGAGGGTCGTGAACAAACTGCCGATCATTGAGTCTTGTCACACAGTAT	AATTGTACACTTGTAAATGGTTAATTGGTTACATGAATTTCACTTCCATTAAAATGTATATATGTAATAACAGTATAGTACAAGTAAAGGGTGCTTTGTAATGTGAAAAGATAAAATATTAAGTAGTTCAGGTTTATCTCATTCTGCTTTCTTTTTCACATATGTTATTTTATATATATTGGGTATGTGTTCAACATTTTGAGTGATAGAGGTATACGATTTAAAAATTAGGTAATACTGCTCTAGTTCCACGGTAACAAATCTAGAACATGGAGAGTGACTCTAACCCACAGAAAAACTTAGTATACCTTGGCTGAATAATATTGACAAACTTATTCTCAATGCCTTTATGCAAATAATGCATTTTCCAGTTCAACACAATTCCTTCATTCCCCAGAACTTTTATCTTTTGCGATCCAAACATTAATGTTTCATATCCAGCAATGATCAAATTTAAATTCTTCTGCTAGGGTTTACGTATATCTAAGCCAGTTTTACATCAATAATTGTTCTTCTGTTCTTCATTAGCATTAGAGATGGAGAGAAAACATGCTAGACTTACCCACACAAGGCAGGGAGTAGCCAAGTTGAGGGTCGTGAACAAACTGCCGATCATTGAGTCTTGTCACACAGTAT	-			P-0074325-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			3	83	0	0	ENST00000366898.1:c.798_871+562del		p.X266_splice	ENST00000366898	NM_004562.2	266																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120467966	120467966	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0074325-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			260	77	300	0	ENST00000256646.2:c.4473T>G	p.Phe1491Leu	p.F1491L	ENST00000256646	NM_024408.3	1491	ttT/ttG																																																																															
SPOP	8405	MSKCC	GRCh37	17	47679305	47679305	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074325-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			356	42	224	0	ENST00000347630.2:c.902A>G	p.Asn301Ser	p.N301S	ENST00000347630	NM_001007230.1	301	aAc/aGc																																																																															
AR	367	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs137852578		P-0074728-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	142	157	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																															
TP53	7157	MSKCC	GRCh37	17	7573976	7573976	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs141402957		P-0074728-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	54	298	0	ENST00000269305.4:c.1051A>G	p.Lys351Glu	p.K351E	ENST00000269305	NM_001126112.2	351	Aag/Gag																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008278	29008278	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201044311		P-0074728-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	91	353	0	ENST00000282397.4:c.593C>T	p.Thr198Met	p.T198M	ENST00000282397	NM_002019.4	198	aCg/aTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767326		P-0074847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	171	257	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087417	27087417	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	100	477	0	ENST00000324856.7:c.1991del	p.Ser664Ter	p.S664*	ENST00000324856	NM_006015.4	664	tCa/ta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0074847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	225	255	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMO	6608	MSKCC	GRCh37	7	128848638	128848638	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	83	328	0	ENST00000249373.3:c.1303G>C	p.Gly435Arg	p.G435R	ENST00000249373	NM_005631.4	435	Ggg/Cgg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519972		P-0074848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	223	437	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0074848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	181	334	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220027	5220027	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202004674		P-0074848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	194	413	0	ENST00000357368.4:c.3688G>A	p.Gly1230Ser	p.G1230S	ENST00000357368	NM_002850.3	1230	Ggc/Agc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245976	5245976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	192	541	0	ENST00000357368.4:c.799G>A	p.Val267Met	p.V267M	ENST00000357368	NM_002850.3	267	Gtg/Atg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372179	55372179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	459	461	0	ENST00000297316.4:c.869C>A	p.Pro290His	p.P290H	ENST00000297316	NM_022454.3	290	cCc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577031	7577032	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0074850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	115	474	0	ENST00000269305.4:c.906dup	p.Ser303GlufsTer3	p.S303Efs*3	ENST00000269305	NM_001126112.2	302	-/G																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0074850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	67	230	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230605	46230605	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1303729294		P-0074909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	68	376	0	ENST00000334344.6:c.854G>A	p.Arg285Gln	p.R285Q	ENST00000334344	NM_152641.2	285	cGg/cAg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495513	56495513	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	33	407	0	ENST00000267101.3:c.3703C>G	p.Leu1235Val	p.L1235V	ENST00000267101	NM_001982.3	1235	Ctg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578266	7578268	+	missense_variant	Missense_Mutation	ONP	TAA	TAA	AAT			P-0074909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	201	426	0	ENST00000269305.4:c.581_583delinsATT	p.Leu194_Ile195delinsHisPhe	p.L194_I195delinsHF	ENST00000269305	NM_001126112.2	194	cTTAtc/cATTtc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402781	139402781	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	135	367	0	ENST00000277541.6:c.3228G>T	p.Gln1076His	p.Q1076H	ENST00000277541	NM_017617.3	1076	caG/caT																																																																															
MTOR	2475	MSKCC	GRCh37	1	11307738	11307738	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	55	362	0	ENST00000361445.4:c.1169T>A	p.Met390Lys	p.M390K	ENST00000361445	NM_004958.3	390	aTg/aAg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797404	45797404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	149	475	0	ENST00000372115.3:c.1073C>T	p.Ser358Phe	p.S358F	ENST00000372115	NM_001048171.1	358	tCt/tTt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243520	46243520	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	45	342	0	ENST00000334344.6:c.1873G>T	p.Asp625Tyr	p.D625Y	ENST00000334344	NM_152641.2	625	Gat/Tat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912744	32912744	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	106	321	0	ENST00000380152.3:c.4252A>G	p.Ile1418Val	p.I1418V	ENST00000380152		1418	Ata/Gta																																																																															
FANCA	2175	MSKCC	GRCh37	16	89838160	89838160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	115	406	0	ENST00000389301.3:c.2077G>T	p.Asp693Tyr	p.D693Y	ENST00000389301	NM_000135.2	693	Gat/Tat																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285335	212285335	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0074909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	103	287	0	ENST00000342788.4:c.2966G>T	p.Gly989Val	p.G989V	ENST00000342788	NM_005235.2	989	gGt/gTt																																																																															
BARD1	580	MSKCC	GRCh37	2	215593520	215593520	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	54	379	0	ENST00000260947.4:c.2214C>G	p.Ile738Met	p.I738M	ENST00000260947	NM_000465.2	738	atC/atG																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907371	32907371	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0074911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	220	337	0	ENST00000380152.3:c.1759del	p.Thr587GlnfsTer27	p.T587Qfs*27	ENST00000380152		586	Aaa/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448270	49448421	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCAGCCCTTATCCCATTTCCTGCCCCATTCTCCTCACTCACCTCCAGGTTCTCCTAGGTGGGCAGGTGTAAGGCCCTCAGGGAAACCAATCTGTGATAGGTCCTCACTGGGCAGCACTGCCTCATTGGGCCCTGGGCTCCCCCCAGGGGACA	CCAGCCCTTATCCCATTTCCTGCCCCATTCTCCTCACTCACCTCCAGGTTCTCCTAGGTGGGCAGGTGTAAGGCCCTCAGGGAAACCAATCTGTGATAGGTCCTCACTGGGCAGCACTGCCTCATTGGGCCCTGGGCTCCCCCCAGGGGACA	-			P-0074911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	174	412	0	ENST00000301067.7:c.290_400+41del		p.X97_splice	ENST00000301067	NM_003482.3	97																																																																																
CARD11	84433	MSKCC	GRCh37	7	2962806	2962806	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	41	305	0	ENST00000396946.4:c.2102C>A	p.Ala701Asp	p.A701D	ENST00000396946	NM_032415.4	701	gCc/gAc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7976175	7976175	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	147	368	0	ENST00000319144.4:c.2020C>A	p.His674Asn	p.H674N	ENST00000319144	NM_001139.2	674	Cac/Aac																																																																															
IRF4	3662	MSKCC	GRCh37	6	398915	398915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	71	337	0	ENST00000380956.4:c.726del	p.Glu243LysfsTer21	p.E243Kfs*21	ENST00000380956	NM_001195286.1	242	gCc/gc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0074914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	17	231	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MGA	23269	MSKCC	GRCh37	15	41988476	41988477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0074914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	155	452	0	ENST00000219905.7:c.1272_1273dup	p.Lys425ArgfsTer4	p.K425Rfs*4	ENST00000219905	NM_001164273.1	423	cta/ctAGa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43785234	43785234	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0074914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	112	276	0	ENST00000382044.4:c.7+1G>T		p.X3_splice	ENST00000382044	NM_001141980.1	3																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9923429	9923429	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	36	400	0	ENST00000330684.3:c.1858C>A	p.Gln620Lys	p.Q620K	ENST00000330684	NM_001134407.1	620	Cag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112177128	112177129	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0074914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	23	394	0	ENST00000257430.4:c.5838_5839dup	p.Thr1947LysfsTer24	p.T1947Kfs*24	ENST00000257430	NM_000038.5	1946	gca/gcAAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0046591-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			248	113	312	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046591-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			292	149	313	0	ENST00000250448.2:c.781C>T	p.Arg261Cys	p.R261C	ENST00000250448	NM_004496.3	261	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152027747	152027747	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046591-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	142	139	0	ENST00000262189.6:c.328C>T	p.Arg110Ter	p.R110*	ENST00000262189	NM_170606.2	110	Cga/Tga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37667819	37667819	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046591-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			252	410	129	0	ENST00000447079.4:c.2704C>G	p.Arg902Gly	p.R902G	ENST00000447079	NM_015083.1	902	Cga/Gga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37667883	37667883	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046591-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			484	108	112	0	ENST00000447079.4:c.2768G>A	p.Gly923Glu	p.G923E	ENST00000447079	NM_015083.1	923	gGa/gAa																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870630	40870630	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777571053		P-0046591-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			255	254	171	0	ENST00000428826.2:c.773G>A	p.Arg258Gln	p.R258Q	ENST00000428826		258	cGa/cAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224027	36224027	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046591-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			472	191	309	0	ENST00000222270.7:c.6577C>G	p.Leu2193Val	p.L2193V	ENST00000222270	NM_014727.1	2193	Ctt/Gtt																																																																															
RHOA	387	MSKCC	GRCh37	3	49397730	49397730	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046591-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	276	145	0	ENST00000418115.1:c.494A>G	p.Asp165Gly	p.D165G	ENST00000418115	NM_001664.2	165	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0072892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			434	181	374	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633662	69633662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			302	33	263	0	ENST00000334134.2:c.40C>T	p.Pro14Ser	p.P14S	ENST00000334134	NM_005247.2	14	Ccc/Tcc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178512	56178512	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			538	88	367	0	ENST00000399503.3:c.3485A>G	p.Glu1162Gly	p.E1162G	ENST00000399503	NM_005921.1	1162	gAa/gGa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971204	21971204	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072892-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	202	384	0	ENST00000304494.5:c.154del	p.Met52Ter	p.M52*	ENST00000304494	NM_000077.4	52	Atg/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0073266-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			314	46	302	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
WT1	7490	MSKCC	GRCh37	11	32450141	32450141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073266-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	50	357	0	ENST00000332351.3:c.671G>A	p.Gly224Glu	p.G224E	ENST00000332351	NM_024426.4	224	gGg/gAg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911290	29911290	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073266-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	27	265	0	ENST00000376809.5:c.589G>T	p.Glu197Ter	p.E197*	ENST00000376809	NM_002116.7	197	Gag/Tag																																																																															
CUL3	8452	MSKCC	GRCh37	2	225343063	225343063	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0073266-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			255	37	261	0	ENST00000264414.4:c.2030-1G>T		p.X677_splice	ENST00000264414	NM_003590.4	677																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27057793	27057793	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0073266-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			469	77	407	0	ENST00000324856.7:c.1501C>T	p.Gln501Ter	p.Q501*	ENST00000324856	NM_006015.4	501	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428224	49428224	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073266-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			523	68	374	0	ENST00000301067.7:c.10476del	p.Asn3493ThrfsTer9	p.N3493Tfs*9	ENST00000301067	NM_003482.3	3492	ccC/cc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187522551	187522551	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073266-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			348	57	262	0	ENST00000441802.2:c.11512del	p.Ser3838AlafsTer3	p.S3838Afs*3	ENST00000441802	NM_005245.3	3838	Agc/gc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259130	16259130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073266-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			459	66	368	0	ENST00000375759.3:c.6395G>T	p.Gly2132Val	p.G2132V	ENST00000375759	NM_015001.2	2132	gGt/gTt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99472819	99472819	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs755569322		P-0073266-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			448	42	302	0	ENST00000268035.6:c.2815G>T	p.Ala939Ser	p.A939S	ENST00000268035	NM_000875.3	939	Gct/Tct																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643698	52643698	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073266-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			335	59	346	0	ENST00000394830.3:c.2198A>G	p.Asn733Ser	p.N733S	ENST00000394830	NM_018313.4	733	aAt/aGt																																																																															
KDR	3791	MSKCC	GRCh37	4	55948702	55948702	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0073266-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			229	15	208	0	ENST00000263923.4:c.3762+1G>A		p.X1254_splice	ENST00000263923	NM_002253.2	1254																																																																																
TGFBR1	7046	MSKCC	GRCh37	9	101908784	101908793	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTCGATGA	TTCTCGATGA	-			P-0073266-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			276	59	286	0	ENST00000374994.4:c.1151_1160del	p.Leu384ProfsTer2	p.L384Pfs*2	ENST00000374994	NM_004612.2	383	gTTCTCGATGAt/gt																																																																															
TAP1	6890	MSKCC	GRCh37	6	32820817	32820818	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0073266-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	42	261	0	ENST00000354258.4:c.776_777del	p.Leu259ArgfsTer14	p.L259Rfs*14	ENST00000354258	NM_000593.5	259	cTT/c																																																																															
PREX2	80243	MSKCC	GRCh37	8	68942731	68942731	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0073266-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			398	52	286	0	ENST00000288368.4:c.544-1G>T		p.X182_splice	ENST00000288368	NM_024870.2	182																																																																																
SRC	6714	MSKCC	GRCh37	20	36024629	36024629	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073266-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			358	38	334	0	ENST00000358208.4:c.618G>T	p.Lys206Asn	p.K206N	ENST00000358208		206	aaG/aaT																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609535	81609535	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073266-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			476	71	380	0	ENST00000298171.2:c.1133T>A	p.Leu378Gln	p.L378Q	ENST00000298171	NM_000369.2	378	cTa/cAa																																																																															
IRF4	3662	MSKCC	GRCh37	6	393201	393201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073266-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			271	26	299	0	ENST00000380956.4:c.49G>T	p.Val17Leu	p.V17L	ENST00000380956	NM_001195286.1	17	Gtg/Ttg																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805754	46805754	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073266-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	67	356	0	ENST00000290295.7:c.202G>T	p.Gly68Trp	p.G68W	ENST00000290295	NM_006361.5	68	Ggg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49418361	49418361	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0073266-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			428	74	334	0	ENST00000301067.7:c.16052G>T	p.Arg5351Leu	p.R5351L	ENST00000301067	NM_003482.3	5351	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0074053-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			291	74	297	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715613	30715613	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs878854610		P-0074053-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			293	43	399	0	ENST00000359013.4:c.1346A>G	p.Tyr449Cys	p.Y449C	ENST00000359013	NM_001024847.2	449	tAc/tGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0074329-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			409	179	418	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0074329-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			365	192	379	1	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
ARAF	369	MSKCC	GRCh37	X	47430771	47430771	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764281834		P-0074329-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			968	94	496	0	ENST00000377045.4:c.1736G>A	p.Arg579Gln	p.R579Q	ENST00000377045	NM_001654.4	579	cGg/cAg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480409	89480409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074329-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			349	69	348	1	ENST00000336596.2:c.2246C>T	p.Ala749Val	p.A749V	ENST00000336596	NM_005233.5	749	gCt/gTt																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17389671	17389671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074329-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			400	107	434	0	ENST00000359435.4:c.804G>A	p.Met268Ile	p.M268I	ENST00000359435	NM_001033549.1	268	atG/atA																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40384145	40384145	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0074329-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			420	83	375	0	ENST00000293328.3:c.1A>G	p.Met1?	p.M1?	ENST00000293328	NM_012448.3	1	Atg/Gtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0074799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	92	479	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0074799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	107	526	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933434	36933434	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs796065343		P-0074799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	169	583	0	ENST00000361632.4:c.1853C>T	p.Thr618Ile	p.T618I	ENST00000361632		618	aCc/aTc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552927	106552927	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776111636		P-0074799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	154	622	0	ENST00000369096.4:c.892G>A	p.Val298Ile	p.V298I	ENST00000369096	NM_001198.3	298	Gtt/Att																																																																															
PREX2	80243	MSKCC	GRCh37	8	69103980	69103980	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	44	371	0	ENST00000288368.4:c.4370A>T	p.Asn1457Ile	p.N1457I	ENST00000288368	NM_024870.2	1457	aAt/aTt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0074811-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	189	367	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578217	7578217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074811-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	460	666	3	ENST00000269305.4:c.632C>T	p.Thr211Ile	p.T211I	ENST00000269305	NM_001126112.2	211	aCt/aTt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651292	52651292	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0074811-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	151	528	4	ENST00000394830.3:c.1804G>T	p.Glu602Ter	p.E602*	ENST00000394830	NM_018313.4	602	Gag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152055747	152055747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074811-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	125	298	0	ENST00000262189.6:c.175G>T	p.Gly59Trp	p.G59W	ENST00000262189	NM_170606.2	59	Ggg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0074813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	480	649	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11168340	11168340	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774784384		P-0074813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	128	505	0	ENST00000361445.4:c.7532G>A	p.Arg2511Gln	p.R2511Q	ENST00000361445	NM_004958.3	2511	cGg/cAg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600005	10600005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			978	593	942	0	ENST00000171111.5:c.1571G>A	p.Gly524Asp	p.G524D	ENST00000171111	NM_203500.1	524	gGc/gAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599878	10599878	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1168	327	949	0	ENST00000171111.5:c.1698C>G	p.Ile566Met	p.I566M	ENST00000171111	NM_203500.1	566	atC/atG																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923071	39923071	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	467	439	1	ENST00000378444.4:c.3637C>T	p.His1213Tyr	p.H1213Y	ENST00000378444	NM_001123385.1	1213	Cac/Tac																																																																															
RB1	5925	MSKCC	GRCh37	13	48878122	48878123	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0074813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	888	1445	0	ENST00000267163.4:c.74_75insT	p.Pro26AlafsTer5	p.P26Afs*5	ENST00000267163	NM_000321.2	25	ccg/ccTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938920	178938920	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	47	206	0	ENST00000263967.3:c.2162A>G	p.Gln721Arg	p.Q721R	ENST00000263967	NM_006218.2	721	cAg/cGg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86627256	86627256	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757065933		P-0074813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	259	590	0	ENST00000274376.6:c.631C>T	p.Arg211Trp	p.R211W	ENST00000274376	NM_002890.2	211	Cgg/Tgg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35861034	35861034	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	169	511	0	ENST00000303115.3:c.163C>A	p.Leu55Met	p.L55M	ENST00000303115	NM_002185.3	55	Ctg/Atg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056641	26056641	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774100132		P-0074813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			792	518	808	0	ENST00000343677.2:c.16C>T	p.Pro6Ser	p.P6S	ENST00000343677	NM_005319.3	6	Cct/Tct																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520761	176520761	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141530067		P-0074815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			865	110	491	3	ENST00000292408.4:c.1504G>A	p.Val502Ile	p.V502I	ENST00000292408	NM_213647.1	502	Gtc/Atc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109743	115109743	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750109853		P-0074815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1034	253	900	0	ENST00000257566.3:c.2135C>T	p.Ala712Val	p.A712V	ENST00000257566	NM_016569.3	712	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0074815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	134	299	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579532	7579538	+	frameshift_variant	Frame_Shift_Del	DEL	TGTTCAA	TGTTCAA	-			P-0074815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			967	313	944	0	ENST00000269305.4:c.149_155del	p.Ile50AsnfsTer71	p.I50Nfs*71	ENST00000269305	NM_001126112.2	50	aTTGAACAa/aa																																																																															
RB1	5925	MSKCC	GRCh37	13	49027145	49027146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCTTATTAAACAATCAAAGGACC			P-0074815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	63	257	0	ENST00000267163.4:c.1713_1735dup	p.Arg579LeufsTer40	p.R579Lfs*40	ENST00000267163	NM_000321.2	571	gat/gaTCTTATTAAACAATCAAAGGACCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0074887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	32	205	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391254	139391254	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374453977		P-0074887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	28	360	0	ENST00000277541.6:c.6937C>T	p.Arg2313Trp	p.R2313W	ENST00000277541	NM_017617.3	2313	Cgg/Tgg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015125	37015126	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	T			P-0074887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	26	273	0	ENST00000358127.4:c.278_279delinsA	p.Pro93GlnfsTer66	p.P93Qfs*66	ENST00000358127	NM_001280556.1	93	cCC/cA																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038867	47038867	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0074887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	18	187	0	ENST00000329236.7:c.643G>T	p.Glu215Ter	p.E215*	ENST00000329236	NM_001204466.1	215	Gag/Tag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81941363	81941363	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	35	198	0	ENST00000359376.3:c.1541A>T	p.Glu514Val	p.E514V	ENST00000359376	NM_002661.3	514	gAg/gTg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59934528	59934528	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1060501740		P-0074887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	26	258	0	ENST00000259008.2:c.270C>A	p.Cys90Ter	p.C90*	ENST00000259008	NM_032043.2	90	tgC/tgA																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898494	63898494	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	22	247	0	ENST00000295900.6:c.220G>T	p.Ala74Ser	p.A74S	ENST00000295900	NM_000333.3	74	Gca/Tca																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041360	47041360	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	28	334	1	ENST00000329236.7:c.1470C>A	p.Asp490Glu	p.D490E	ENST00000329236	NM_001204466.1	490	gaC/gaA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0074900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	362	238	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123504165	123504165	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1212771107		P-0074900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	68	231	0	ENST00000371139.4:c.341C>T	p.Thr114Ile	p.T114I	ENST00000371139	NM_001114937.2	114	aCt/aTt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	404912	404912	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1315112503		P-0074900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	38	335	1	ENST00000399788.2:c.4282C>T	p.Arg1428Ter	p.R1428*	ENST00000399788	NM_001042603.1	1428	Cga/Tga																																																																															
PREX2	80243	MSKCC	GRCh37	8	69009434	69009434	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0074900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	191	294	0	ENST00000288368.4:c.2551A>G	p.Lys851Glu	p.K851E	ENST00000288368	NM_024870.2	851	Aag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0075004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	178	467	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
RB1	5925	MSKCC	GRCh37	13	49033822	49033822	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T	rs587778867		P-0075004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	38	231	0	ENST00000267163.4:c.1961-2A>T		p.X654_splice	ENST00000267163	NM_000321.2	654																																																																																
ARID5B	84159	MSKCC	GRCh37	10	63851233	63851233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	60	315	0	ENST00000279873.7:c.2011G>A	p.Gly671Arg	p.G671R	ENST00000279873	NM_032199.2	671	Gga/Aga																																																																															
NF1	4763	MSKCC	GRCh37	17	29653271	29653271	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0075004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	77	296	0	ENST00000358273.4:c.5268+1G>A		p.X1756_splice	ENST00000358273	NM_001042492.2	1756																																																																																
IL10	3586	MSKCC	GRCh37	1	206944739	206944739	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	56	245	0	ENST00000423557.1:c.187A>T	p.Asn63Tyr	p.N63Y	ENST00000423557	NM_000572.2	63	Aac/Tac																																																																															
TERT	7015	MSKCC	GRCh37	5	1293809	1293809	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			872	48	404	0	ENST00000310581.5:c.1192G>T	p.Gly398Trp	p.G398W	ENST00000310581	NM_198253.2	398	Ggg/Tgg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1625653	1625653	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0075004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	63	300	0	ENST00000344749.5:c.421T>C	p.Ser141Pro	p.S141P	ENST00000344749	NM_001136139.2	141	Tcg/Ccg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212537974	212537974	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	28	277	0	ENST00000342788.4:c.1631G>C	p.Arg544Pro	p.R544P	ENST00000342788	NM_005235.2	544	cGg/cCg																																																																															
TET1	80312	MSKCC	GRCh37	10	70333689	70333689	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	53	391	0	ENST00000373644.4:c.1594C>T	p.Gln532Ter	p.Q532*	ENST00000373644	NM_030625.2	532	Caa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604673	48604673	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1060500738		P-0074740-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			433	130	435	0	ENST00000342988.3:c.1495T>C	p.Cys499Arg	p.C499R	ENST00000342988	NM_005359.5	499	Tgc/Cgc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67670697	67670697	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749826586		P-0074740-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			458	177	502	0	ENST00000264010.4:c.1942G>A	p.Ala648Thr	p.A648T	ENST00000264010	NM_006565.3	648	Gcc/Acc																																																																															
LYN	4067	MSKCC	GRCh37	8	56879439	56879439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074740-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			554	51	457	0	ENST00000519728.1:c.956C>T	p.Thr319Ile	p.T319I	ENST00000519728	NM_002350.3	319	aCc/aTc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88670401	88670401	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074740-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			456	71	393	0	ENST00000360948.2:c.1285A>T	p.Thr429Ser	p.T429S	ENST00000360948	NM_001012338.2	429	Act/Tct																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080234	5080234	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0074740-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			322	123	303	0	ENST00000381652.3:c.2137C>T	p.Gln713Ter	p.Q713*	ENST00000381652	NM_004972.3	713	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0074740-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	119	294	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16263754	16263754	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074740-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			579	98	520	0	ENST00000375759.3:c.10123G>T	p.Gly3375Cys	p.G3375C	ENST00000375759	NM_015001.2	3375	Ggt/Tgt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55131151	55131151	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs758580911		P-0074740-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			442	92	426	0	ENST00000257290.5:c.694G>T	p.Val232Leu	p.V232L	ENST00000257290	NM_006206.4	232	Gtg/Ttg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485820	8485820	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074740-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	132	441	0	ENST00000356435.5:c.2997C>G	p.Ser999Arg	p.S999R	ENST00000356435		999	agC/agG																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660199	227660199	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074740-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			573	135	545	0	ENST00000305123.5:c.3256A>G	p.Lys1086Glu	p.K1086E	ENST00000305123	NM_005544.2	1086	Aaa/Gaa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981843	201981843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074740-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	195	512	0	ENST00000359651.3:c.554G>A	p.Gly185Asp	p.G185D	ENST00000359651		185	gGc/gAc																																																																															
NPM1	4869	MSKCC	GRCh37	5	170819975	170819975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074740-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			597	58	382	0	ENST00000296930.5:c.517G>A	p.Asp173Asn	p.D173N	ENST00000296930	NM_002520.6	173	Gat/Aat																																																																															
RET	5979	MSKCC	GRCh37	10	43612137	43612137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074740-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			677	77	599	0	ENST00000355710.3:c.2242G>T	p.Gly748Cys	p.G748C	ENST00000355710	NM_020975.4	748	Ggc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557866	187557866	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074740-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			588	60	514	0	ENST00000441802.2:c.3845G>T	p.Gly1282Val	p.G1282V	ENST00000441802	NM_005245.3	1282	gGc/gTc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47059230	47059230	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs777018406		P-0074741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	25	371	0	ENST00000409792.3:c.7432-1G>T		p.X2478_splice	ENST00000409792	NM_014159.6	2478																																																																																
MSI1	4440	MSKCC	GRCh37	12	120795621	120795625	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TTTTG	TTTTG	-			P-0074741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	12	158	0	ENST00000257552.2:c.528_532del	p.Lys177GlyfsTer4	p.K177Gfs*4	ENST00000257552	NM_002442.3	176	aaCAAAAtg/aatg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577148	7577148	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1060501194		P-0074807-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			262	192	316	1	ENST00000269305.4:c.790del	p.Leu264TyrfsTer81	p.L264Yfs*81	ENST00000269305	NM_001126112.2	264	Cta/ta																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390141	89390141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074807-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			264	137	279	0	ENST00000336596.2:c.890A>G	p.Gln297Arg	p.Q297R	ENST00000336596	NM_005233.5	297	cAg/cGg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0074832-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	25	347	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28931766	28931766	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074832-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	37	434	0	ENST00000282397.4:c.2173G>C	p.Asp725His	p.D725H	ENST00000282397	NM_002019.4	725	Gat/Cat																																																																															
KDR	3791	MSKCC	GRCh37	4	55970853	55970853	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074832-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	31	387	0	ENST00000263923.4:c.1944G>C	p.Lys648Asn	p.K648N	ENST00000263923	NM_002253.2	648	aaG/aaC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628567	187628567	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074832-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	49	559	0	ENST00000441802.2:c.2415del	p.Trp805CysfsTer27	p.W805Cfs*27	ENST00000441802	NM_005245.3	805	tgG/tg																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0074853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	286	273	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
APC	324	MSKCC	GRCh37	5	112173345	112173345	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0074853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	202	353	0	ENST00000257430.4:c.2054G>A	p.Trp685Ter	p.W685*	ENST00000257430	NM_000038.5	685	tGg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112175466	112175466	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs786204170		P-0074853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	204	390	0	ENST00000257430.4:c.4175C>A	p.Ser1392Ter	p.S1392*	ENST00000257430	NM_000038.5	1392	tCa/tAa																																																																															
KLF5	688	MSKCC	GRCh37	13	73636644	73636644	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1013	567	513	0	ENST00000377687.4:c.907T>C	p.Ser303Pro	p.S303P	ENST00000377687	NM_001730.3	303	Tca/Cca																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48586226	48586235	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TTTTCTTTAG	TTTTCTTTAG	ATTGT			P-0074853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	112	235	2	ENST00000342988.3:c.905-10_905-1delinsATTGT		p.X302_splice	ENST00000342988	NM_005359.5	302																																																																																
FLT4	2324	MSKCC	GRCh37	5	180047286	180047286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074858-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	295	426	1	ENST00000261937.6:c.2429C>T	p.Thr810Met	p.T810M	ENST00000261937	NM_182925.4	810	aCg/aTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0074858-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1132	257	453	11	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0074858-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			107	91	320	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0074858-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	294	421	0	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
MSI1	4440	MSKCC	GRCh37	12	120784078	120784078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074858-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			712	149	451	0	ENST00000257552.2:c.907C>T	p.Arg303Cys	p.R303C	ENST00000257552	NM_002442.3	303	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057830	27057831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0074858-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			800	221	526	0	ENST00000324856.7:c.1542_1543dup	p.Gln515LeufsTer105	p.Q515Lfs*105	ENST00000324856	NM_006015.4	513	tcc/tcCTc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479811	67479811	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060500766		P-0074859-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	147	399	2	ENST00000327367.4:c.1118G>A	p.Arg373His	p.R373H	ENST00000327367	NM_005902.3	373	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0074859-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	76	334	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175621	112175621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0074859-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	215	496	0	ENST00000257430.4:c.4330C>T	p.Gln1444Ter	p.Q1444*	ENST00000257430	NM_000038.5	1444	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0074859-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	243	313	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374819	149374819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074859-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	27	311	0	ENST00000360632.3:c.275C>T	p.Ala92Val	p.A92V	ENST00000360632	NM_015472.4	92	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0074860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	371	477	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061226	38061226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	301	530	0	ENST00000250448.2:c.763G>A	p.Glu255Lys	p.E255K	ENST00000250448	NM_004496.3	255	Gag/Aag																																																																															
NBN	4683	MSKCC	GRCh37	8	90955524	90955524	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753270166		P-0074860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			2423	259	359	0	ENST00000265433.3:c.2141G>A	p.Arg714Gln	p.R714Q	ENST00000265433	NM_002485.4	714	cGa/cAa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404598	8404598	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	230	364	1	ENST00000356435.5:c.4149G>T	p.Lys1383Asn	p.K1383N	ENST00000356435		1383	aaG/aaT																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636965	176636965	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0074860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			748	208	523	0	ENST00000439151.2:c.1565A>C	p.Lys522Thr	p.K522T	ENST00000439151	NM_022455.4	522	aAa/aCa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0074861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	211	486	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0074861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	194	438	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36651928	36651928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	31	448	0	ENST00000244741.5:c.50C>T	p.Ala17Val	p.A17V	ENST00000244741	NM_000389.4	17	gCc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112175558	112175559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0074861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	73	533	0	ENST00000257430.4:c.4268_4269dup	p.Pro1424PhefsTer50	p.P1424Ffs*50	ENST00000257430	NM_000038.5	1423	ctt/cTTtt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134898815	134898815	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	70	394	0	ENST00000398015.3:c.1873A>G	p.Ile625Val	p.I625V	ENST00000398015	NM_004441.4	625	Atc/Gtc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0075041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	112	251	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0075041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	100	390	2	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
ERG	2078	MSKCC	GRCh37	21	39755678	39755678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	76	381	0	ENST00000288319.7:c.1087G>A	p.Asp363Asn	p.D363N	ENST00000288319	NM_182918.3	363	Gat/Aat																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52729031	52729031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1158328586		P-0075041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	80	358	1	ENST00000322088.6:c.1723G>A	p.Val575Ile	p.V575I	ENST00000322088	NM_014225.5	575	Gtc/Atc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446252	29446252	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773142324		P-0075041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	74	357	0	ENST00000544604.2:c.2083C>T	p.Pro695Ser	p.P695S	ENST00000544604	NM_001206998.1	695	Cct/Tct																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302667	15302667	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	73	468	0	ENST00000263388.2:c.691C>A	p.Gln231Lys	p.Q231K	ENST00000263388	NM_000435.2	231	Cag/Aag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210424	2210424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	62	343	2	ENST00000398665.3:c.1031G>T	p.Arg344Leu	p.R344L	ENST00000398665	NM_032482.2	344	cGc/cTc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658744	3658744	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	117	387	0	ENST00000294008.3:c.222G>C	p.Arg74Ser	p.R74S	ENST00000294008	NM_032444.2	74	agG/agC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0075042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	29	265	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
RB1	5925	MSKCC	GRCh37	13	48942685	48942685	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913301		P-0075042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	33	213	0	ENST00000267163.4:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000267163	NM_000321.2	358	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443703	49443703	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0075042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	24	333	0	ENST00000301067.7:c.3668C>G	p.Ser1223Ter	p.S1223*	ENST00000301067	NM_003482.3	1223	tCa/tGa																																																																															
STK11	6794	MSKCC	GRCh37	19	1218467	1218467	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0075042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	33	264	0	ENST00000326873.7:c.343del	p.Asp115MetfsTer14	p.D115Mfs*14	ENST00000326873	NM_000455.4	114	gtG/gt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468458	89468458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	14	274	0	ENST00000336596.2:c.1992G>T	p.Arg664Ser	p.R664S	ENST00000336596	NM_005233.5	664	agG/agT																																																																															
HGF	3082	MSKCC	GRCh37	7	81388121	81388121	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0075042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	11	186	0	ENST00000222390.5:c.255-1G>T		p.X85_splice	ENST00000222390	NM_000601.4	85																																																																																
DNMT3A	1788	MSKCC	GRCh37	2	25467035	25467035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	19	341	2	ENST00000264709.3:c.1840G>T	p.Asp614Tyr	p.D614Y	ENST00000264709	NM_175629.2	614	Gac/Tac																																																																															
MAX	4149	MSKCC	GRCh37	14	65544646	65544646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0075042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	34	364	0	ENST00000358664.4:c.280C>T	p.Leu94Phe	p.L94F	ENST00000358664	NM_002382.4	94	Ctt/Ttt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79950587	79950587	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	11	262	0	ENST00000265081.6:c.41C>G	p.Ser14Cys	p.S14C	ENST00000265081	NM_002439.4	14	tCc/tGc																																																																															
NF1	4763	MSKCC	GRCh37	17	29486068	29486068	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	23	224	0	ENST00000358273.4:c.245C>G	p.Ser82Cys	p.S82C	ENST00000358273	NM_001042492.2	82	tCt/tGt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683588	162683588	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	25	283	0	ENST00000366898.1:c.381C>A	p.Ser127Arg	p.S127R	ENST00000366898	NM_004562.2	127	agC/agA																																																																															
TET1	80312	MSKCC	GRCh37	10	70332406	70332406	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	27	290	0	ENST00000373644.4:c.311T>A	p.Met104Lys	p.M104K	ENST00000373644	NM_030625.2	104	aTg/aAg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150902525	150902525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0075042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	58	295	0	ENST00000271640.5:c.343G>T	p.Glu115Ter	p.E115*	ENST00000271640	NM_001145415.1	115	Gaa/Taa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337707	73337707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	30	229	1	ENST00000377767.4:c.2009C>A	p.Ala670Asp	p.A670D	ENST00000377767	NM_014953.3	670	gCc/gAc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46532725	46532725	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0075042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	18	253	0	ENST00000262741.5:c.353G>T	p.Arg118Leu	p.R118L	ENST00000262741	NM_003629.3	118	cGg/cTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29661904	29661904	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0075042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	22	305	0	ENST00000358273.4:c.5861C>G	p.Ser1954Ter	p.S1954*	ENST00000358273	NM_001042492.2	1954	tCa/tGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519942		P-0075045-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	294	201	0	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799911	72799911	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0075045-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	121	202	0	ENST00000325599.8:c.1258G>C	p.Glu420Gln	p.E420Q	ENST00000325599	NM_018130.2	420	Gaa/Caa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0075045-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			81	240	192	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0075045-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			74	132	209	0	ENST00000342988.3:c.1255G>T	p.Gly419Trp	p.G419W	ENST00000342988	NM_005359.5	419	Ggg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175788	112175789	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTT			P-0075045-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			91	137	311	0	ENST00000257430.4:c.4498_4501dup	p.Ser1501PhefsTer14	p.S1501Ffs*14	ENST00000257430	NM_000038.5	1499	-/TTTT																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099540	157099540	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0075045-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	94	220	0	ENST00000346085.5:c.477T>A	p.His159Gln	p.H159Q	ENST00000346085	NM_020732.3	159	caT/caA																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118984	70118984	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0075045-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	593	322	1	ENST00000245479.2:c.556C>T	p.Gln186Ter	p.Q186*	ENST00000245479	NM_000346.3	186	Cag/Tag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864114	57864114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075045-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	144	306	0	ENST00000228682.2:c.1591C>T	p.Arg531Cys	p.R531C	ENST00000228682	NM_005269.2	531	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0075047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	51	194	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0075047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	39	423	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593491	48593494	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0075047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	28	234	0	ENST00000342988.3:c.1245_1248del	p.Asp415GlufsTer20	p.D415Efs*20	ENST00000342988	NM_005359.5	414	ttAGAC/tt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022247	31022247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0075047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	35	259	0	ENST00000375687.4:c.1732C>T	p.Arg578Cys	p.R578C	ENST00000375687	NM_015338.5	578	Cgt/Tgt																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504358	186504370	+	frameshift_variant	Frame_Shift_Del	DEL	CAATTCGAATTCT	CAATTCGAATTCT	-			P-0075047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	19	170	0	ENST00000323963.5:c.695_707del	p.Pro232ArgfsTer2	p.P232Rfs*2	ENST00000323963		232	cCAATTCGAATTCTg/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0074766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	167	399	5	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522188	157522188	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370838091		P-0074766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	94	406	2	ENST00000346085.5:c.4460C>T	p.Ala1487Val	p.A1487V	ENST00000346085	NM_020732.3	1487	gCg/gTg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56376624	56376624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	28	226	0	ENST00000348428.3:c.664G>A	p.Val222Ile	p.V222I	ENST00000348428	NM_006785.3	222	Gtc/Atc																																																																															
POLE	5426	MSKCC	GRCh37	12	133208909	133208909	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776551240		P-0074766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	111	390	7	ENST00000320574.5:c.6322G>A	p.Val2108Met	p.V2108M	ENST00000320574	NM_006231.2	2108	Gtg/Atg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484598	57484598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	154	381	5	ENST00000371085.3:c.682C>T	p.Arg228Cys	p.R228C	ENST00000371085	NM_000516.4	228	Cgc/Tgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89712014	89712017	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	GCAG	GCAG	-			P-0074766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	94	190	4	ENST00000371953.3:c.632_634+1del		p.X211_splice	ENST00000371953	NM_000314.4	211																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0058724-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			339	86	293	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828384	72828384	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759038643		P-0058724-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			789	71	487	0	ENST00000268489.5:c.8197C>T	p.Arg2733Cys	p.R2733C	ENST00000268489	NM_006885.3	2733	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0058724-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			438	151	547	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670358	134670358	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1449079060		P-0058724-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			396	96	477	1	ENST00000398015.3:c.269G>A	p.Arg90His	p.R90H	ENST00000398015	NM_004441.4	90	cGc/cAc																																																																															
KIT	3815	MSKCC	GRCh37	4	55561861	55561861	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201872586		P-0058724-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			443	107	403	0	ENST00000288135.5:c.251C>T	p.Thr84Met	p.T84M	ENST00000288135	NM_000222.2	84	aCg/aTg																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898332	63898332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058724-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			374	39	267	0	ENST00000295900.6:c.58G>A	p.Ala20Thr	p.A20T	ENST00000295900	NM_000333.3	20	Gcg/Acg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526615	106526615	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1490190940		P-0058724-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			416	91	348	0	ENST00000359195.3:c.2908G>A	p.Gly970Arg	p.G970R	ENST00000359195	NM_002649.2	970	Ggg/Agg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0061441-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			88	64	215	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0061441-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	46	341	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7578247	7578247	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061441-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			201	68	338	0	ENST00000269305.4:c.602del	p.Leu201CysfsTer46	p.L201Cfs*46	ENST00000269305	NM_001126112.2	201	tTg/tg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165279	47165279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061441-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			227	63	399	0	ENST00000409792.3:c.847G>T	p.Asp283Tyr	p.D283Y	ENST00000409792	NM_014159.6	283	Gat/Tat																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552718	18552718	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0061441-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			198	12	436	0	ENST00000266497.5:c.2129A>C	p.His710Pro	p.H710P	ENST00000266497		710	cAt/cCt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604649	48604649	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061441-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			262	14	394	0	ENST00000342988.3:c.1471G>T	p.Gly491Cys	p.G491C	ENST00000342988	NM_005359.5	491	Ggt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0070124-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			630	682	538	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
APC	324	MSKCC	GRCh37	5	112175921	112175921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070124-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	331	703	0	ENST00000257430.4:c.4630G>T	p.Glu1544Ter	p.E1544*	ENST00000257430	NM_000038.5	1544	Gaa/Taa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039356	47039358	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0070124-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			227	288	492	0	ENST00000329236.7:c.754_756del	p.Ser252del	p.S252del	ENST00000329236	NM_001204466.1	250	TCC/-																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717609	89717609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs876661024		P-0070124-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			143	392	482	0	ENST00000371953.3:c.635-1G>A		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																																
EGFR	1956	MSKCC	GRCh37	7	55241704	55241704	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070124-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			970	158	521	0	ENST00000275493.2:c.2152C>G	p.Leu718Val	p.L718V	ENST00000275493	NM_005228.3	718	Ctg/Gtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241705	55241705	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070124-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			942	195	524	0	ENST00000275493.2:c.2153T>A	p.Leu718Gln	p.L718Q	ENST00000275493	NM_005228.3	718	cTg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241683	55241683	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070124-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			601	683	585	0	ENST00000275493.2:c.2131G>C	p.Glu711Gln	p.E711Q	ENST00000275493	NM_005228.3	711	Gaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0073515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	47	783	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485917	8485917	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757868633		P-0073515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	20	636	0	ENST00000356435.5:c.2900C>T	p.Pro967Leu	p.P967L	ENST00000356435		967	cCg/cTg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964515	70964515	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148573764		P-0073515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	9	690	0	ENST00000276594.2:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000276594	NM_024504.3	505	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0073515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	13	359	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813418	102813418	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	15	660	0	ENST00000307046.8:c.271A>C	p.Ile91Leu	p.I91L	ENST00000307046	NM_001111285.1	91	Atc/Ctc																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544542	86544542	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	41	694	0	ENST00000262426.4:c.367A>G	p.Thr123Ala	p.T123A	ENST00000262426	NM_001451.2	123	Acc/Gcc																																																																															
REL	5966	MSKCC	GRCh37	2	61149251	61149256	+	missense_variant	Missense_Mutation	ONP	GATTTA	GATTTA	TATTTT			P-0073515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	11	635	1	ENST00000295025.8:c.1441_1446delinsTATTTT	p.Asp481_Leu482delinsTyrPhe	p.D481_L482delinsYF	ENST00000295025	NM_002908.2	481	GATTTA/TATTTT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0073781-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			425	150	200	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690405	33690405	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777285142		P-0073781-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			508	98	268	0	ENST00000308377.4:c.422G>A	p.Arg141His	p.R141H	ENST00000308377	NM_152270.3	141	cGt/cAt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026693	48026693	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073781-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			550	7	0	0	ENST00000234420.5:c.1571A>C	p.Tyr524Ser	p.Y524S	ENST00000234420	NM_000179.2	524	tAc/tCc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306574	41306574	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073781-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			384	23	290	0	ENST00000373198.4:c.1085T>C	p.Leu362Pro	p.L362P	ENST00000373198	NM_133170.3	362	cTc/cCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0073918-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			171	21	339	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62321519	62321519	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A			P-0073918-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			234	21	572	0	ENST00000482936.1:c.2221G>A	p.Val741Ile	p.V741I	ENST00000482936		741	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074094-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	143	271	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0074094-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	248	226	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46574184	46574184	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780355908		P-0074094-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	84	285	0	ENST00000263734.3:c.199C>T	p.His67Tyr	p.H67Y	ENST00000263734	NM_001430.4	67	Cac/Tac																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528009	157528009	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074094-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	104	413	0	ENST00000346085.5:c.5734A>T	p.Ser1912Cys	p.S1912C	ENST00000346085	NM_020732.3	1912	Agt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767326		P-0074199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	121	127	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492796	56492796	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0074199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	255	284	0	ENST00000407977.2:c.143T>G	p.Ile48Ser	p.I48S	ENST00000407977		48	aTc/aGc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343564	343595	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGGTTGGGAGCTGGGTGGGGTGGCATGGTG	GGGGGTTGGGAGCTGGGTGGGGTGGCATGGTG	-			P-0074199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	63	305	0	ENST00000262320.3:c.2079_2110del	p.Thr694AsnfsTer77	p.T694Nfs*77	ENST00000262320	NM_003502.3	693	ccCACCATGCCACCCCACCCAGCTCCCAACCCCCta/ccta																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778214	27778214	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	35	322	0	ENST00000369163.2:c.363G>T	p.Met121Ile	p.M121I	ENST00000369163	NM_003536.2	121	atG/atT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0074237-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			559	309	314	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1314927	1314927	+	downstream_gene_variant	3'Flank	SNP	G	G	C			P-0074237-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			603	72	372	0				ENST00000381566																																																																																		
PTPRT	11122	MSKCC	GRCh37	20	41408912	41408912	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074389-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			299	50	331	0	ENST00000373198.4:c.514G>T	p.Gly172Cys	p.G172C	ENST00000373198	NM_133170.3	172	Ggt/Tgt																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430824	78430828	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGA	CTTGA	-			P-0074389-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			350	57	419	0	ENST00000370768.2:c.561_565del	p.Gln188AsnfsTer6	p.Q188Nfs*6	ENST00000370768	NM_003902.3	187	gtTCAAGaa/gtaa																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589773	69589773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074389-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			553	38	689	0	ENST00000168712.1:c.80G>A	p.Gly27Glu	p.G27E	ENST00000168712	NM_002007.2	27	gGg/gAg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0074642-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			712	104	644	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78796080	78796080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074642-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			756	113	542	0	ENST00000306801.3:c.970G>A	p.Ala324Thr	p.A324T	ENST00000306801	NM_020761.2	324	Gcg/Acg																																																																															
APLNR	187	MSKCC	GRCh37	11	57004033	57004033	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	T			P-0074642-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			826	109	592	0	ENST00000257254.3:c.446C>A	p.Ala149Asp	p.A149D	ENST00000257254		149	gCc/gAc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0074643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	70	433	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131691026		P-0074643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	82	567	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0074643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	63	469	0	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
MAX	4149	MSKCC	GRCh37	14	65569055	65569055	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0074643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	56	297	0	ENST00000358664.4:c.3G>A	p.Met1?	p.M1?	ENST00000358664	NM_002382.4	1	atG/atA																																																																															
TET1	80312	MSKCC	GRCh37	10	70411606	70411606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1303423182		P-0074643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	41	358	0	ENST00000373644.4:c.4280G>A	p.Arg1427Gln	p.R1427Q	ENST00000373644	NM_030625.2	1427	cGa/cAa																																																																															
HGF	3082	MSKCC	GRCh37	7	81358969	81358969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	63	411	0	ENST00000222390.5:c.992C>A	p.Ser331Tyr	p.S331Y	ENST00000222390	NM_000601.4	331	tCt/tAt																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256740	19256740	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	51	455	0	ENST00000162023.5:c.973C>G	p.Pro325Ala	p.P325A	ENST00000162023		325	Ccg/Gcg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060736	38060736	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0074643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	98	579	0	ENST00000250448.2:c.1253A>C	p.Lys418Thr	p.K418T	ENST00000250448	NM_004496.3	418	aAg/aCg																																																																															
NF1	4763	MSKCC	GRCh37	17	29664842	29664843	+	stop_gained	Nonsense_Mutation	DNP	CA	CA	AT			P-0074643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	56	384	0	ENST00000358273.4:c.6648_6649delinsAT	p.Cys2216_Met2217delinsTer	p.C2216_M2217delins*	ENST00000358273	NM_001042492.2	2216	tgCAtg/tgATtg																																																																															
RAC2	5880	MSKCC	GRCh37	22	37627987	37627987	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	54	446	0	ENST00000249071.6:c.273G>T	p.Glu91Asp	p.E91D	ENST00000249071	NM_002872.4	91	gaG/gaT																																																																															
FLT1	2321	MSKCC	GRCh37	13	28880866	28880866	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	68	492	0	ENST00000282397.4:c.3764T>C	p.Leu1255Pro	p.L1255P	ENST00000282397	NM_002019.4	1255	cTg/cCg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79950569	79950569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	57	345	0	ENST00000265081.6:c.23C>T	p.Ser8Leu	p.S8L	ENST00000265081	NM_002439.4	8	tCg/tTg																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40685718	40685718	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	65	418	0	ENST00000249776.8:c.871G>C	p.Glu291Gln	p.E291Q	ENST00000249776	NM_033286.3	291	Gaa/Caa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221015	36221015	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	55	466	0	ENST00000222270.7:c.5065C>G	p.Leu1689Val	p.L1689V	ENST00000222270	NM_014727.1	1689	Ctg/Gtg																																																																															
ATR	545	MSKCC	GRCh37	3	142274864	142274864	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs904124330		P-0074643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	52	398	0	ENST00000350721.4:c.2196C>G	p.Phe732Leu	p.F732L	ENST00000350721	NM_001184.3	732	ttC/ttG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0074645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	55	452	0	ENST00000269305.4:c.783-1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49447103	49447103	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0074645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	63	543	0	ENST00000301067.7:c.841A>T	p.Lys281Ter	p.K281*	ENST00000301067	NM_003482.3	281	Aaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0074647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	57	337	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106543541	106543541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	83	443	0	ENST00000369096.4:c.343C>A	p.Pro115Thr	p.P115T	ENST00000369096	NM_001198.3	115	Ccc/Acc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0074687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	286	552	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0074687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	98	494	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0074687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	365	788	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
ALK	238	MSKCC	GRCh37	2	29917799	29917799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	245	603	0	ENST00000389048.3:c.869G>T	p.Trp290Leu	p.W290L	ENST00000389048	NM_004304.4	290	tGg/tTg																																																																															
ALK	238	MSKCC	GRCh37	2	29451758	29451758	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1340992656		P-0074687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	145	510	0	ENST00000389048.3:c.2807G>T	p.Gly936Val	p.G936V	ENST00000389048	NM_004304.4	936	gGa/gTa																																																																															
LYN	4067	MSKCC	GRCh37	8	56863304	56863304	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	218	496	0	ENST00000519728.1:c.448G>C	p.Ala150Pro	p.A150P	ENST00000519728	NM_002350.3	150	Gct/Cct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0074687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	246	429	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35857089	35857089	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			742	57	485	0	ENST00000303115.3:c.10C>G	p.Leu4Val	p.L4V	ENST00000303115	NM_002185.3	4	Cta/Gta																																																																															
TSC2	7249	MSKCC	GRCh37	16	2114393	2114393	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	261	661	0	ENST00000219476.3:c.1564C>G	p.His522Asp	p.H522D	ENST00000219476	NM_000548.3	522	Cac/Gac																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513264	106513264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	325	554	0	ENST00000359195.3:c.2168G>T	p.Gly723Val	p.G723V	ENST00000359195	NM_002649.2	723	gGc/gTc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39637946	39637946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	179	557	0	ENST00000262039.4:c.2363G>T	p.Gly788Val	p.G788V	ENST00000262039	NM_002647.2	788	gGg/gTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231322	46231322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	99	530	0	ENST00000334344.6:c.1162G>T	p.Gly388Cys	p.G388C	ENST00000334344	NM_152641.2	388	Ggt/Tgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076964	41076964	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0074687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	209	462	0	ENST00000373198.4:c.1456G>T	p.Gly486Ter	p.G486*	ENST00000373198	NM_133170.3	486	Gga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923392	9923392	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	257	563	0	ENST00000330684.3:c.1895C>G	p.Ser632Cys	p.S632C	ENST00000330684	NM_001134407.1	632	tCt/tGt																																																																															
NADK	65220	MSKCC	GRCh37	1	1696778	1696778	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	259	486	0	ENST00000341426.5:c.68G>C	p.Cys23Ser	p.C23S	ENST00000341426	NM_023018.4	23	tGc/tCc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115252240	115252240	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	233	545	0	ENST00000369535.4:c.400G>T	p.Ala134Ser	p.A134S	ENST00000369535	NM_002524.4	134	Gcc/Tcc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672704	30672704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			984	346	985	0	ENST00000376406.3:c.4256C>T	p.Ser1419Phe	p.S1419F	ENST00000376406	NM_014641.2	1419	tCc/tTc																																																																															
BTK	695	MSKCC	GRCh37	X	100617660	100617660	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	281	271	0	ENST00000308731.7:c.409G>T	p.Asp137Tyr	p.D137Y	ENST00000308731	NM_000061.2	137	Gat/Tat																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546675	9546675	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	332	627	0	ENST00000353224.5:c.1347G>C	p.Leu449Phe	p.L449F	ENST00000353224	NM_177990.2	449	ttG/ttC																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288431	21288431	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	341	627	0	ENST00000354336.3:c.676G>T	p.Ala226Ser	p.A226S	ENST00000354336	NM_005207.3	226	Gca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0074690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	350	434	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448270	56448270	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0074690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	405	638	0	ENST00000407977.2:c.375+2T>C		p.X125_splice	ENST00000407977		125																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0074690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	234	394	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342652	87342652	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	97	473	0	ENST00000277120.3:c.937C>G	p.Pro313Ala	p.P313A	ENST00000277120		313	Cca/Gca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057699	27057702	+	frameshift_variant	Frame_Shift_Del	DEL	ATAT	ATAT	AAT			P-0074690-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	508	676	1	ENST00000324856.7:c.1408del	p.Tyr470IlefsTer149	p.Y470Ifs*149	ENST00000324856	NM_006015.4	469	ccATAT/ccAAT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0074724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	297	492	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21345966	21345966	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1395990299		P-0074724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	118	515	0	ENST00000215739.8:c.841C>T	p.Pro281Ser	p.P281S	ENST00000215739	NM_006767.3	281	Ccg/Tcg																																																																															
TEK	7010	MSKCC	GRCh37	9	27197328	27197328	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	39	328	0	ENST00000380036.4:c.1640G>T	p.Arg547Ile	p.R547I	ENST00000380036	NM_000459.3	547	aGa/aTa																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045795	26045795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			875	160	622	0	ENST00000540144.1:c.157C>T	p.Arg53Cys	p.R53C	ENST00000540144	NM_003531.2	53	Cgt/Tgt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0074772-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	77	326	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0074772-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	74	265	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577579	7577580	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0074772-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	88	415	0	ENST00000269305.4:c.701dup	p.Tyr234Ter	p.Y234*	ENST00000269305	NM_001126112.2	234	tac/taAc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998435	100998435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074772-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	78	439	0	ENST00000325455.5:c.1367C>T	p.Ser456Leu	p.S456L	ENST00000325455	NM_001202474.3	456	tCg/tTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730817	40730817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	209	371	0	ENST00000373198.4:c.3718C>T	p.Leu1240Phe	p.L1240F	ENST00000373198	NM_133170.3	1240	Ctt/Ttt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207090	1207091	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0074774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	369	427	0	ENST00000326873.7:c.179dup	p.Tyr60Ter	p.Y60*	ENST00000326873	NM_000455.4	60	tac/tAac																																																																															
MED12	9968	MSKCC	GRCh37	X	70352784	70352784	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1369442321		P-0074774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	108	178	0	ENST00000374080.3:c.4505C>T	p.Ser1502Phe	p.S1502F	ENST00000374080		1502	tCc/tTc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437611	110437611	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	154	343	0	ENST00000375856.3:c.790G>T	p.Val264Phe	p.V264F	ENST00000375856	NM_003749.2	264	Gtc/Ttc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553506	106553506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			734	103	356	0	ENST00000369096.4:c.1471G>A	p.Ala491Thr	p.A491T	ENST00000369096	NM_001198.3	491	Gcg/Acg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176015317	176015317	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0074774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	109	206	0	ENST00000367669.3:c.1421G>T	p.Ser474Ile	p.S474I	ENST00000367669	NM_022457.5	474	aGc/aTc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965593	93965593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	72	322	0	ENST00000369303.4:c.2335del	p.Leu779CysfsTer5	p.L779Cfs*5	ENST00000369303	NM_004440.3	779	Ctg/tg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929253	32929253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	102	291	0	ENST00000380152.3:c.7263G>T	p.Gln2421His	p.Q2421H	ENST00000380152		2421	caG/caT																																																																															
BCL2	596	MSKCC	GRCh37	18	60985362	60985362	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	178	398	0	ENST00000333681.4:c.538T>C	p.Tyr180His	p.Y180H	ENST00000333681		180	Tac/Cac																																																																															
BARD1	580	MSKCC	GRCh37	2	215632330	215632330	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	219	317	0	ENST00000260947.4:c.1444del	p.Gln482SerfsTer6	p.Q482Sfs*6	ENST00000260947	NM_000465.2	482	Cag/ag																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271764	38271764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			866	167	421	0	ENST00000425967.3:c.2185G>T	p.Gly729Cys	p.G729C	ENST00000425967	NM_001174067.1	729	Ggc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922375	178922375	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0074774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	47	124	0	ENST00000263967.3:c.1144A>T	p.Arg382Trp	p.R382W	ENST00000263967	NM_006218.2	382	Agg/Tgg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49924927	49924927	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	133	375	0	ENST00000296474.3:c.4016G>T	p.Gly1339Val	p.G1339V	ENST00000296474	NM_002447.2	1339	gGg/gTg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434483	121434483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	292	395	0	ENST00000257555.6:c.1247C>A	p.Pro416His	p.P416H	ENST00000257555		416	cCt/cAt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060865	38060865	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			833	745	470	0	ENST00000250448.2:c.1124C>G	p.Pro375Arg	p.P375R	ENST00000250448	NM_004496.3	375	cCg/cGg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680656	88680656	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	97	272	0	ENST00000360948.2:c.601C>A	p.Arg201Ser	p.R201S	ENST00000360948	NM_001012338.2	201	Cgc/Agc																																																																															
ALK	238	MSKCC	GRCh37	2	29606693	29606693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	224	350	0	ENST00000389048.3:c.1187C>A	p.Pro396Gln	p.P396Q	ENST00000389048	NM_004304.4	396	cCa/cAa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683608	162683608	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	276	357	0	ENST00000366898.1:c.361G>C	p.Val121Leu	p.V121L	ENST00000366898	NM_004562.2	121	Gtc/Ctc																																																																															
MET	4233	MSKCC	GRCh37	7	116339728	116339728	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			712	146	364	0	ENST00000397752.3:c.590T>C	p.Val197Ala	p.V197A	ENST00000397752	NM_000245.2	197	gTa/gCa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220699	1220699	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	113	481	0	ENST00000326873.7:c.717G>T	p.Trp239Cys	p.W239C	ENST00000326873	NM_000455.4	239	tgG/tgT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0074776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	103	316	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141582957	141582957	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	64	451	0	ENST00000220592.5:c.290G>T	p.Arg97Met	p.R97M	ENST00000220592	NM_012154.3	97	aGg/aTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140508795	140508796	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0074776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	41	269	0	ENST00000288602.6:c.505-1_505delinsTT		p.X169_splice	ENST00000288602	NM_004333.4	169																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602363	10602373	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCGACCACT	GGGCGACCACT	-			P-0074776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	141	570	0	ENST00000171111.5:c.1205_1215del	p.Gln402LeufsTer9	p.Q402Lfs*9	ENST00000171111	NM_203500.1	402	cAGTGGTCGCCC/c																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0074783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	505	451	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577150	7577150	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	209	380	0	ENST00000269305.4:c.788del	p.Asn263IlefsTer82	p.N263Ifs*82	ENST00000269305	NM_001126112.2	263	aAt/at																																																																															
EGFR	1956	MSKCC	GRCh37	7	55229312	55229312	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			814	222	512	0	ENST00000275493.2:c.1619A>G	p.Asn540Ser	p.N540S	ENST00000275493	NM_005228.3	540	aAc/aGc																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108289	8108289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748036368		P-0074783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	207	522	0	ENST00000585124.1:c.935C>T	p.Pro312Leu	p.P312L	ENST00000585124	NM_004217.3	312	cCc/cTc																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374753	149374753	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	149	466	0	ENST00000360632.3:c.341G>T	p.Arg114Leu	p.R114L	ENST00000360632	NM_015472.4	114	cGc/cTc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022346	31022346	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372418554		P-0074786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	18	522	0	ENST00000375687.4:c.1831G>A	p.Ala611Thr	p.A611T	ENST00000375687	NM_015338.5	611	Gcc/Acc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	157	432	0	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc																																																																															
NF1	4763	MSKCC	GRCh37	17	29562732	29562732	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0074786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	42	285	0	ENST00000358273.4:c.3812T>G	p.Met1271Arg	p.M1271R	ENST00000358273	NM_001042492.2	1271	aTg/aGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436939	49436939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	36	389	0	ENST00000301067.7:c.5564C>T	p.Pro1855Leu	p.P1855L	ENST00000301067	NM_003482.3	1855	cCa/cTa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81946299	81946299	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs541071022		P-0074792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			20	131	366	0	ENST00000359376.3:c.2032G>A	p.Asp678Asn	p.D678N	ENST00000359376	NM_002661.3	678	Gac/Aac																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437793	110437793	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	189	276	0	ENST00000375856.3:c.608A>G	p.Lys203Arg	p.K203R	ENST00000375856	NM_003749.2	203	aAg/aGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0074792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	88	342	0	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																															
PGR	5241	MSKCC	GRCh37	11	100999684	100999684	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0074792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			25	115	449	1	ENST00000325455.5:c.118C>T	p.Gln40Ter	p.Q40*	ENST00000325455	NM_001202474.3	40	Cag/Tag																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138383914	138383914	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	222	311	0	ENST00000289153.2:c.2636A>T	p.Asp879Val	p.D879V	ENST00000289153	NM_006219.2	879	gAt/gTt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696745	47696745	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0074792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	166	349	0	ENST00000347630.2:c.203G>C	p.Cys68Ser	p.C68S	ENST00000347630	NM_001007230.1	68	tGt/tCt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115269681	115269689	+	inframe_deletion	In_Frame_Del	DEL	CATCATAAG	CATCATAAG	-			P-0074792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	89	300	0	ENST00000438362.2:c.1517_1525del	p.Ala506_Asp508del	p.A506_D508del	ENST00000438362	NM_001242891.1	506	gCTTATGATGac/gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578201	7578277	+	frameshift_variant	Frame_Shift_Del	DEL	CACACTATGTCGAAAAGTGTTTCTGTCATCCAAATACTCCACACGCAAATTTCCTTCCACTCGGATAAGATGCTGAG	CACACTATGTCGAAAAGTGTTTCTGTCATCCAAATACTCCACACGCAAATTTCCTTCCACTCGGATAAGATGCTGAG	-			P-0074792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	147	502	0	ENST00000269305.4:c.572_648del	p.Pro191ArgfsTer5	p.P191Rfs*5	ENST00000269305	NM_001126112.2	191	cCTCAGCATCTTATCCGAGTGGAAGGAAATTTGCGTGTGGAGTATTTGGATGACAGAAACACTTTTCGACATAGTGTG/c																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004979	150004979	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	33	506	0	ENST00000253339.5:c.1246A>G	p.Ser416Gly	p.S416G	ENST00000253339		416	Agt/Ggt																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72866525	72866540	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAAAAAGACACTAGA	AGAAAAAGACACTAGA	-			P-0074792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	13	298	0	ENST00000325599.8:c.728-5_738del		p.X243_splice	ENST00000325599	NM_018130.2	243																																																																																
RPS6KA4	8986	MSKCC	GRCh37	11	64128939	64128939	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0074792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	132	478	0	ENST00000334205.4:c.571-2A>C		p.X191_splice	ENST00000334205	NM_003942.2	191																																																																																
RPS6KA4	8986	MSKCC	GRCh37	11	64138058	64138058	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	112	440	0	ENST00000334205.4:c.1981A>G	p.Lys661Glu	p.K661E	ENST00000334205	NM_003942.2	661	Aag/Gag																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14021995	14021995	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	25	308	0	ENST00000311895.7:c.695T>A	p.Ile232Asn	p.I232N	ENST00000311895	NM_005236.2	232	aTt/aAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1296328	1296328	+	upstream_gene_variant	5'Flank	SNP	C	C	G			P-0074792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	103	393	0				ENST00000310581	NM_198253.2																																																																																	
ARID1A	8289	MSKCC	GRCh37	1	27105977	27105977	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	167	500	0	ENST00000324856.7:c.5588del	p.Thr1863LysfsTer20	p.T1863Kfs*20	ENST00000324856	NM_006015.4	1863	aCa/aa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482369	56482369	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	66	390	0	ENST00000267101.3:c.917C>G	p.Pro306Arg	p.P306R	ENST00000267101	NM_001982.3	306	cCt/cGt																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675139	40675139	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	82	459	0	ENST00000249776.8:c.103C>A	p.Leu35Ile	p.L35I	ENST00000249776	NM_033286.3	35	Cta/Ata																																																																															
TP53	7157	MSKCC	GRCh37	17	7577136	7577137	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0074793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	129	473	0	ENST00000269305.4:c.801dup	p.Asn268GlufsTer4	p.N268Efs*4	ENST00000269305	NM_001126112.2	267	-/G																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266051	41266631	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	AGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCA	AGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCA	-			P-0074793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	85	409	0	ENST00000349496.5:c.51_431del		p.X17_splice	ENST00000349496	NM_001904.3	17	ccAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAa/cca																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143352352	143352352	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074793-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	62	315	0	ENST00000262992.4:c.61G>C	p.Ala21Pro	p.A21P	ENST00000262992	NM_001101669.1	21	Gcc/Ccc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	-	rs121913425		P-0074822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	14	313	0	ENST00000275493.2:c.2237_2251del	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0074824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	90	330	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																															
SMO	6608	MSKCC	GRCh37	7	128845590	128845590	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772693769		P-0074824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	45	358	0	ENST00000249373.3:c.887G>A	p.Arg296His	p.R296H	ENST00000249373	NM_005631.4	296	cGt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431339	49431339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	169	382	0	ENST00000301067.7:c.9800C>T	p.Ser3267Leu	p.S3267L	ENST00000301067	NM_003482.3	3267	tCa/tTa																																																																															
REL	5966	MSKCC	GRCh37	2	61149048	61149048	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0074824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	150	437	1	ENST00000295025.8:c.1238C>A	p.Ser413Ter	p.S413*	ENST00000295025	NM_002908.2	413	tCa/tAa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966742	25966745	+	frameshift_variant	Frame_Shift_Del	DEL	GTGG	GTGG	-			P-0074824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	93	404	0	ENST00000435504.4:c.2461_2464del	p.Pro821LysfsTer19	p.P821Kfs*19	ENST00000435504		821	CCACaa/aa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713444	30713444	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0074824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	99	489	2	ENST00000359013.4:c.844G>T	p.Glu282Ter	p.E282*	ENST00000359013	NM_001024847.2	282	Gag/Tag																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40460234	40460234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	285	502	0	ENST00000345506.4:c.1945C>T	p.Arg649Trp	p.R649W	ENST00000345506	NM_003152.3	649	Cgg/Tgg																																																																															
ALK	238	MSKCC	GRCh37	2	29443631	29443631	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519784		P-0074826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			979	419	530	0	ENST00000389048.3:c.3586C>A	p.Leu1196Met	p.L1196M	ENST00000389048	NM_004304.4	1196	Ctg/Atg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106336	27106337	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0074829-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	157	534	0	ENST00000324856.7:c.5952_5953del	p.Ser1985GlnfsTer13	p.S1985Qfs*13	ENST00000324856	NM_006015.4	1983	TGt/t																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0074829-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	110	495	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120523	70120533	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	CCTTGAGGAGG	CCTTGAGGAGG	-			P-0074829-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	175	467	0	ENST00000245479.2:c.1528_*8del		p.*510*	ENST00000245479	NM_000346.3	509																																																																																
APC	324	MSKCC	GRCh37	5	112175322	112175322	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0074829-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	112	462	0	ENST00000257430.4:c.4031C>A	p.Ser1344Ter	p.S1344*	ENST00000257430	NM_000038.5	1344	tCa/tAa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740544	58740545	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-	rs1399649942		P-0074829-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	56	530	0	ENST00000305921.3:c.1450_1451del	p.Leu484LysfsTer4	p.L484Kfs*4	ENST00000305921	NM_003620.3	483	acTTta/acta																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984742	72984742	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1337540676		P-0074829-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	159	428	1	ENST00000268489.5:c.2842G>A	p.Ala948Thr	p.A948T	ENST00000268489	NM_006885.3	948	Gcc/Acc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468505	89468505	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074829-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	86	431	0	ENST00000336596.2:c.2039C>A	p.Pro680His	p.P680H	ENST00000336596	NM_005233.5	680	cCc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099403	157099417	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAG	CAGCAGCAGCAGCAG	-	rs1035606470		P-0073961-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			616	116	429	0	ENST00000346085.5:c.348_362del	p.Gln127_Gln131del	p.Q127_Q131del	ENST00000346085	NM_020732.3	114	CAGCAGCAGCAGCAG/-																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696421	47696421	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073961-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	241	289	0	ENST00000347630.2:c.402G>C	p.Lys134Asn	p.K134N	ENST00000347630	NM_001007230.1	134	aaG/aaC																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750823	57750823	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073961-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			245	375	294	0	ENST00000274289.3:c.1781A>C	p.Asp594Ala	p.D594A	ENST00000274289	NM_006622.3	594	gAt/gCt																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96931041	96931041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073961-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	120	321	0	ENST00000258439.3:c.79C>T	p.Pro27Ser	p.P27S	ENST00000258439	NM_001193304.2	27	Ccg/Tcg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0074676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	76	317	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs121913370		P-0074676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	55	197	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt																																																																															
STK11	6794	MSKCC	GRCh37	19	1222987	1222987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	92	319	0	ENST00000326873.7:c.924G>T	p.Trp308Cys	p.W308C	ENST00000326873	NM_000455.4	308	tgG/tgT																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098970	178098970	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	49	280	0	ENST00000397062.3:c.75G>T	p.Arg25Ser	p.R25S	ENST00000397062	NM_006164.4	25	agG/agT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0074676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	49	243	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45872196	45872196	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	110	372	0	ENST00000391945.4:c.238A>T	p.Ile80Phe	p.I80F	ENST00000391945	NM_000400.3	80	Att/Ttt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164782	36164782	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	117	409	0	ENST00000300305.3:c.1093G>C	p.Gly365Arg	p.G365R	ENST00000300305		365	Ggc/Cgc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101986	11101986	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	51	298	1	ENST00000344626.4:c.1407del	p.Gln470ArgfsTer31	p.Q470Rfs*31	ENST00000344626	NM_003072.3	469	cGg/cg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0067443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	54	427	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786204041		P-0067443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	61	457	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0067443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	49	239	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914713	32914713	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	21	346	0	ENST00000380152.3:c.6221A>T	p.His2074Leu	p.H2074L	ENST00000380152		2074	cAc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0070370-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			41	27	404	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070370-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			22	24	298	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112175271	112175272	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0070370-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			37	25	318	0	ENST00000257430.4:c.3981dup	p.Gln1328ThrfsTer4	p.Q1328Tfs*4	ENST00000257430	NM_000038.5	1327	tca/tcAa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950185	38950185	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772137802		P-0070370-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			15	15	328	0	ENST00000357387.3:c.3765G>A	p.Met1255Ile	p.M1255I	ENST00000357387	NM_152756.3	1255	atG/atA																																																																															
HGF	3082	MSKCC	GRCh37	7	81372778	81372778	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073335-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			286	122	421	0	ENST00000222390.5:c.756C>A	p.Asp252Glu	p.D252E	ENST00000222390	NM_000601.4	252	gaC/gaA																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599910	10599910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073335-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			136	247	387	0	ENST00000171111.5:c.1666G>A	p.Ala556Thr	p.A556T	ENST00000171111	NM_203500.1	556	Gcc/Acc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46267781	46267781	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs755361920		P-0073335-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			297	170	422	0	ENST00000371998.3:c.2542A>G	p.Ile848Val	p.I848V	ENST00000371998		848	Att/Gtt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0073335-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	249	337	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220606	1220609	+	frameshift_variant	Frame_Shift_Del	DEL	CACC	CACC	-			P-0073335-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			118	360	488	0	ENST00000326873.7:c.624_627del	p.Thr209AlafsTer77	p.T209Afs*77	ENST00000326873	NM_000455.4	208	gaCACC/ga																																																																															
KDR	3791	MSKCC	GRCh37	4	55956188	55956188	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073335-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			274	133	370	0	ENST00000263923.4:c.3127A>G	p.Lys1043Glu	p.K1043E	ENST00000263923	NM_002253.2	1043	Aaa/Gaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023284	27023285	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073335-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			95	66	353	1	ENST00000324856.7:c.394dup	p.Val132GlyfsTer268	p.V132Gfs*268	ENST00000324856	NM_006015.4	130	-/G																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112427	115112427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073335-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			199	216	485	0	ENST00000257566.3:c.1313G>T	p.Ser438Ile	p.S438I	ENST00000257566	NM_016569.3	438	aGc/aTc																																																																															
SCG5	6447	MSKCC	GRCh37	15	32988727	32988727	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073335-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			272	116	367	0	ENST00000300175.4:c.556T>C	p.Tyr186His	p.Y186H	ENST00000300175	NM_001144757.1	186	Tat/Cat																																																																															
PREX2	80243	MSKCC	GRCh37	8	68981299	68981299	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073335-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			322	113	253	0	ENST00000288368.4:c.1371G>T	p.Gln457His	p.Q457H	ENST00000288368	NM_024870.2	457	caG/caT																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713733	30713733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073335-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			127	152	535	0	ENST00000359013.4:c.1133C>T	p.Ser378Phe	p.S378F	ENST00000359013	NM_001024847.2	378	tCc/tTc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061212	38061232	+	inframe_deletion	In_Frame_Del	DEL	GTAGCAGCCGTTCTCGAACAT	GTAGCAGCCGTTCTCGAACAT	-			P-0073763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	202	348	0	ENST00000250448.2:c.757_777del	p.Met253_Tyr259del	p.M253_Y259del	ENST00000250448	NM_004496.3	253	ATGTTCGAGAACGGCTGCTAC/-																																																																															
TSC2	7249	MSKCC	GRCh37	16	2112526	2112526	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	85	355	0	ENST00000219476.3:c.1286A>T	p.Tyr429Phe	p.Y429F	ENST00000219476	NM_000548.3	429	tAt/tTt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780284	9780293	+	protein_altering_variant	In_Frame_Del	DEL	ACCCCGCCCT	ACCCCGCCCT	G			P-0073763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	50	360	0	ENST00000377346.4:c.1454_1463delinsG	p.Tyr485_Leu488delinsTrp	p.Y485_L488delinsW	ENST00000377346	NM_005026.3	485	tACCCCGCCCTg/tGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0073921-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			576	211	327	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0073921-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			418	152	386	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
RB1	5925	MSKCC	GRCh37	13	48955459	48955481	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTGATTTTTACAAAGTGATCG	CTTTGATTTTTACAAAGTGATCG	ACATTCA			P-0073921-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			262	60	300	0	ENST00000267163.4:c.1575_1597delinsACATTCA	p.Phe526HisfsTer12	p.F526Hfs*12	ENST00000267163	NM_000321.2	525	gcCTTTGATTTTTACAAAGTGATCGaa/gcACATTCAaa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95571499	95571499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073921-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			544	35	301	0	ENST00000343455.3:c.3178C>T	p.Arg1060Cys	p.R1060C	ENST00000343455	NM_177438.2	1060	Cgc/Tgc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859019	57859019	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073921-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			352	111	367	0	ENST00000228682.2:c.515G>A	p.Gly172Glu	p.G172E	ENST00000228682	NM_005269.2	172	gGa/gAa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117746771	117746771	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073958-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			119	101	300	0	ENST00000368508.3:c.49C>G	p.Leu17Val	p.L17V	ENST00000368508	NM_002944.2	17	Ctt/Gtt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151855966	151855966	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073958-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			369	162	292	0	ENST00000262189.6:c.11652del	p.Phe3885LeufsTer4	p.F3885Lfs*4	ENST00000262189	NM_170606.2	3884	acG/ac																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818843	32818936	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTACCACAGAAATAAGCTCAGATTCTCACTCAGAGAATCACTCAGGGTGGACGTGTCCTCTGTTACCCGAGACATGATGTTACCTGCAGGGTT	GGTACCACAGAAATAAGCTCAGATTCTCACTCAGAGAATCACTCAGGGTGGACGTGTCCTCTGTTACCCGAGACATGATGTTACCTGCAGGGTT	-			P-0073958-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			265	162	304	0	ENST00000354258.4:c.1025-10_1108del		p.X342_splice	ENST00000354258	NM_000593.5	342																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0074310-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			208	110	363	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034476	47034476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0074310-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			94	31	165	0	ENST00000329236.7:c.330G>A	p.Trp110Ter	p.W110*	ENST00000329236	NM_001204466.1	110	tgG/tgA																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591153	67591154	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0074310-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			162	27	382	2	ENST00000274335.5:c.1745+2dup		p.X582_splice	ENST00000274335		582																																																																																
FLT1	2321	MSKCC	GRCh37	13	29041262	29041262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074666-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			200	11	375	0	ENST00000282397.4:c.166G>A	p.Glu56Lys	p.E56K	ENST00000282397	NM_002019.4	56	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs397516436		P-0074666-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			224	104	455	0	ENST00000269305.4:c.637C>G	p.Arg213Gly	p.R213G	ENST00000269305	NM_001126112.2	213	Cga/Gga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41408878	41408878	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074666-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			206	62	347	0	ENST00000373198.4:c.548G>T	p.Arg183Leu	p.R183L	ENST00000373198	NM_133170.3	183	cGg/cTg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264659	46264659	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149192951		P-0074666-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	69	342	0	ENST00000371998.3:c.1529C>T	p.Ser510Phe	p.S510F	ENST00000371998		510	tCt/tTt																																																																															
MET	4233	MSKCC	GRCh37	7	116411886	116411901	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TTTCTCTCTGTTTTAA	TTTCTCTCTGTTTTAA	-			P-0074666-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			169	281	521	0	ENST00000397752.3:c.2888-17_2888-2del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21974744	21974744	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074666-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	30	386	0	ENST00000304494.5:c.83T>A	p.Val28Glu	p.V28E	ENST00000304494	NM_000077.4	28	gTg/gAg																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627744	14627744	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074666-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			405	41	522	0	ENST00000254322.2:c.326G>C	p.Arg109Thr	p.R109T	ENST00000254322	NM_006145.1	109	aGa/aCa																																																																															
POT1	25913	MSKCC	GRCh37	7	124532320	124532320	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0074666-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			50	56	298	0	ENST00000357628.3:c.124G>C	p.Asp42His	p.D42H	ENST00000357628	NM_015450.2	42	Gat/Cat																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250340	110250340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074666-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			222	49	345	0	ENST00000374672.4:c.335C>T	p.Ser112Leu	p.S112L	ENST00000374672	NM_004235.4	112	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0074710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	115	248	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11999013	11999013	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0074710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	112	247	0	ENST00000353533.5:c.513+2T>C		p.X171_splice	ENST00000353533	NM_003010.3	171																																																																																
TP53	7157	MSKCC	GRCh37	17	7578212	7578213	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0074710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	145	386	0	ENST00000269305.4:c.636dup	p.Arg213SerfsTer3	p.R213Sfs*3	ENST00000269305	NM_001126112.2	212	-/T																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0074710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	140	348	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0074712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	150	546	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0074712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	117	395	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651468	52651468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	131	380	0	ENST00000394830.3:c.1628G>A	p.Cys543Tyr	p.C543Y	ENST00000394830	NM_018313.4	543	tGt/tAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212286818	212286818	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	27	329	0	ENST00000342788.4:c.2878G>C	p.Asp960His	p.D960H	ENST00000342788	NM_005235.2	960	Gat/Cat																																																																															
MSH3	4437	MSKCC	GRCh37	5	80168940	80168940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	93	320	0	ENST00000265081.6:c.3136G>A	p.Ala1046Thr	p.A1046T	ENST00000265081	NM_002439.4	1046	Gca/Aca																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729875	30729875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0074712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	97	336	0	ENST00000359013.4:c.1472-1G>T		p.X491_splice	ENST00000359013	NM_001024847.2	491																																																																																
GAB1	2549	MSKCC	GRCh37	4	144359748	144359748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	29	342	0	ENST00000262994.4:c.1190G>A	p.Arg397Gln	p.R397Q	ENST00000262994	NM_002039.3	397	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0074716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	326	510	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
POLE	5426	MSKCC	GRCh37	12	133248878	133248878	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373000452		P-0074716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	135	415	0	ENST00000320574.5:c.1717C>T	p.Arg573Trp	p.R573W	ENST00000320574	NM_006231.2	573	Cgg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5246050	5246050	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1448131962		P-0074716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	86	340	0	ENST00000357368.4:c.725G>A	p.Arg242His	p.R242H	ENST00000357368	NM_002850.3	242	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0074716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	76	295	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858182	152858182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	154	348	0	ENST00000406277.2:c.433C>T	p.His145Tyr	p.H145Y	ENST00000406277	NM_152274.4	145	Cac/Tac																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120079	70120079	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0074716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	160	385	0	ENST00000245479.2:c.1081C>T	p.Gln361Ter	p.Q361*	ENST00000245479	NM_000346.3	361	Cag/Tag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67655363	67655363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	79	361	0	ENST00000264010.4:c.1226G>A	p.Cys409Tyr	p.C409Y	ENST00000264010	NM_006565.3	409	tGt/tAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0074717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	195	461	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PREX2	80243	MSKCC	GRCh37	8	69058536	69058536	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61753703		P-0074717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	38	359	0	ENST00000288368.4:c.4180C>T	p.Arg1394Trp	p.R1394W	ENST00000288368	NM_024870.2	1394	Cgg/Tgg																																																																															
PGR	5241	MSKCC	GRCh37	11	100962543	100962544	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0074717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	59	338	0	ENST00000325455.5:c.1853dup	p.Asn618LysfsTer8	p.N618Kfs*8	ENST00000325455	NM_001202474.3	618	aac/aaAc																																																																															
KDR	3791	MSKCC	GRCh37	4	55976658	55976658	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0074717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	72	409	0	ENST00000263923.4:c.1167T>G	p.Ser389Arg	p.S389R	ENST00000263923	NM_002253.2	389	agT/agG																																																																															
APC	324	MSKCC	GRCh37	5	112175537	112175537	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	76	437	0	ENST00000257430.4:c.4247del	p.Gly1416AlafsTer3	p.G1416Afs*3	ENST00000257430	NM_000038.5	1416	Ggc/gc																																																																															
NF1	4763	MSKCC	GRCh37	17	29559206	29559206	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0074717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	47	257	0	ENST00000358273.4:c.3313A>T	p.Lys1105Ter	p.K1105*	ENST00000358273	NM_001042492.2	1105	Aaa/Taa																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112942237	112942493	+	splice_region_variant,intron_variant	Splice_Region	DEL	TCCACCCACCTGGGCCTCCCAAAGTTCTGGGATTACAGGCGTGAGCCACCATGCCCAGCGTTATTTCACTTCTGCCTCTGTAATTATATTGCTGTATGGCTATCTCTTCTCTCCCTGGGAATGTCAGGTCCTAGGCACAGGAACTGTGTCTGTACCATATCTGGTGCCCAAAGAATGTAGTATGTGTTTTATAGATATCATGTAAGCTTAAACAGCGTGGTCTACATTTTTGTAAATGTCTTTCTTTTTCTTTTCTC	TCCACCCACCTGGGCCTCCCAAAGTTCTGGGATTACAGGCGTGAGCCACCATGCCCAGCGTTATTTCACTTCTGCCTCTGTAATTATATTGCTGTATGGCTATCTCTTCTCTCCCTGGGAATGTCAGGTCCTAGGCACAGGAACTGTGTCTGTACCATATCTGGTGCCCAAAGAATGTAGTATGTGTTTTATAGATATCATGTAAGCTTAAACAGCGTGGTCTACATTTTTGTAAATGTCTTTCTTTTTCTTTTCTC	-			P-0074717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			16	25	18	0	ENST00000351677.2:c.1713-258_1713-2del		p.X571_splice	ENST00000351677	NM_002834.3	571																																																																																
ZNRF3	84133	MSKCC	GRCh37	22	29446167	29446167	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	47	361	0	ENST00000544604.2:c.1998C>G	p.Asn666Lys	p.N666K	ENST00000544604	NM_001206998.1	666	aaC/aaG																																																																															
IDH1	3417	MSKCC	GRCh37	2	209108311	209108311	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	44	359	0	ENST00000345146.2:c.538A>T	p.Met180Leu	p.M180L	ENST00000345146	NM_005896.2	180	Atg/Ttg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0074718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	714	351	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0074718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	122	422	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778914	3778914	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	64	397	0	ENST00000262367.5:c.6134A>G	p.Gln2045Arg	p.Q2045R	ENST00000262367	NM_004380.2	2045	cAg/cGg																																																																															
KIT	3815	MSKCC	GRCh37	4	55595579	55595580	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATC			P-0074718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	31	260	0	ENST00000288135.5:c.2069_2070insATC	p.Ile690_Cys691insSer	p.I690_C691insS	ENST00000288135	NM_000222.2	690	att/atATCt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0074731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	64	456	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55210075	55210075	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0074731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	75	379	0	ENST00000275493.2:c.185T>G	p.Leu62Arg	p.L62R	ENST00000275493	NM_005228.3	62	cTt/cGt																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50479273	50479273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	24	377	3	ENST00000394963.4:c.121G>A	p.Gly41Ser	p.G41S	ENST00000394963	NM_003076.4	41	Ggc/Agc																																																																															
GNA11	2767	MSKCC	GRCh37	19	3120998	3120998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	59	515	0	ENST00000078429.4:c.901G>A	p.Asp301Asn	p.D301N	ENST00000078429	NM_002067.2	301	Gac/Aac																																																																															
GNA11	2767	MSKCC	GRCh37	19	3121133	3121133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	60	458	0	ENST00000078429.4:c.1036G>T	p.Asp346Tyr	p.D346Y	ENST00000078429	NM_002067.2	346	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0074747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	287	306	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0074747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	381	307	1	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
SMO	6608	MSKCC	GRCh37	7	128850328	128850328	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	124	267	1	ENST00000249373.3:c.1591G>T	p.Ala531Ser	p.A531S	ENST00000249373	NM_005631.4	531	Gcc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0074747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	255	216	2	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38283681	38283681	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0074747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			817	102	315	0	ENST00000425967.3:c.797A>C	p.Glu266Ala	p.E266A	ENST00000425967	NM_001174067.1	266	gAg/gCg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111803	56111803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	110	241	0	ENST00000399503.3:c.403G>T	p.Ala135Ser	p.A135S	ENST00000399503	NM_005921.1	135	Gcc/Tcc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805679	32805679	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	54	327	0	ENST00000374899.4:c.332T>C	p.Leu111Pro	p.L111P	ENST00000374899	NM_018833.2	111	cTc/cCc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31025128	31025128	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0074747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			883	81	314	0	ENST00000375687.4:c.4613T>G	p.Leu1538Arg	p.L1538R	ENST00000375687	NM_015338.5	1538	cTt/cGt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010424	48010424	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	52	345	0	ENST00000234420.5:c.52A>G	p.Ser18Gly	p.S18G	ENST00000234420	NM_000179.2	18	Agt/Ggt																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61306511	61306511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	69	314	0	ENST00000341074.5:c.676G>A	p.Asp226Asn	p.D226N	ENST00000341074	NM_002974.2	226	Gat/Aat																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681543	117681543	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	83	284	0	ENST00000368508.3:c.3407C>A	p.Pro1136Gln	p.P1136Q	ENST00000368508	NM_002944.2	1136	cCa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0074758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	110	558	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0074758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	200	366	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0073955-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			440	125	270	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0073955-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			638	321	384	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082280	16082280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1218586780		P-0073955-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			778	92	341	0	ENST00000281043.3:c.94G>A	p.Glu32Lys	p.E32K	ENST00000281043	NM_005378.4	32	Gaa/Aaa																																																																															
MET	4233	MSKCC	GRCh37	7	116417463	116417463	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913244		P-0073955-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			443	268	316	0	ENST00000397752.3:c.3280C>T	p.His1094Tyr	p.H1094Y	ENST00000397752	NM_000245.2	1094	Cat/Tat																																																																															
RET	5979	MSKCC	GRCh37	10	43596014	43596014	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073955-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			819	128	378	0	ENST00000355710.3:c.181G>T	p.Glu61Ter	p.E61*	ENST00000355710	NM_020975.4	61	Gag/Tag																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431404	121431404	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780357		P-0073955-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			852	122	366	0	ENST00000257555.6:c.608G>A	p.Arg203His	p.R203H	ENST00000257555		203	cGt/cAt																																																																															
FH	2271	MSKCC	GRCh37	1	241675289	241675289	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073955-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			571	84	297	0	ENST00000366560.3:c.533A>C	p.Asn178Thr	p.N178T	ENST00000366560	NM_000143.3	178	aAc/aCc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50821704	50821704	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073955-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			335	143	199	0	ENST00000398568.2:c.2041del	p.Glu681AsnfsTer3	p.E681Nfs*3	ENST00000398568	NM_001042412.1	680	gaG/ga																																																																															
TERT	7015	MSKCC	GRCh37	5	1294213	1294213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073955-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			760	248	357	0	ENST00000310581.5:c.788G>T	p.Arg263Leu	p.R263L	ENST00000310581	NM_198253.2	263	cGt/cTt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59878825	59878825	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073955-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			548	185	292	0	ENST00000259008.2:c.929G>T	p.Cys310Phe	p.C310F	ENST00000259008	NM_032043.2	310	tGc/tTc																																																																															
INSR	3643	MSKCC	GRCh37	19	7117179	7117179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073955-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			649	130	306	0	ENST00000302850.5:c.4037G>T	p.Gly1346Val	p.G1346V	ENST00000302850	NM_000208.2	1346	gGg/gTg																																																																															
TP63	8626	MSKCC	GRCh37	3	189612286	189612286	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073955-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			599	271	373	1	ENST00000264731.3:c.2038G>T	p.Glu680Ter	p.E680*	ENST00000264731	NM_003722.4	680	Gag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29588876	29588876	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0073955-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			613	249	278	0	ENST00000358273.4:c.4724+1G>T		p.X1575_splice	ENST00000358273	NM_001042492.2	1575																																																																																
NF1	4763	MSKCC	GRCh37	17	29553513	29553513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073955-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			707	243	306	0	ENST00000358273.4:c.2062G>T	p.Glu688Ter	p.E688*	ENST00000358273	NM_001042492.2	688	Gaa/Taa																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38591695	38591695	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073955-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			561	90	312	0	ENST00000299084.4:c.154G>T	p.Glu52Ter	p.E52*	ENST00000299084	NM_152594.2	52	Gag/Tag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289686	15289686	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073955-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			769	158	365	0	ENST00000263388.2:c.3785G>T	p.Arg1262Leu	p.R1262L	ENST00000263388	NM_000435.2	1262	cGt/cTt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968064	68968064	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0073955-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			423	155	352	0	ENST00000288368.4:c.1094-1G>A		p.X365_splice	ENST00000288368	NM_024870.2	365																																																																																
SPRED1	161742	MSKCC	GRCh37	15	38643552	38643552	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073955-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			685	131	447	0	ENST00000299084.4:c.1022G>C	p.Arg341Thr	p.R341T	ENST00000299084	NM_152594.2	341	aGg/aCg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70971045	70971045	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073955-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			737	118	338	0	ENST00000276594.2:c.1216G>T	p.Gly406Trp	p.G406W	ENST00000276594	NM_024504.3	406	Ggg/Tgg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56480392	56480392	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073955-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			862	172	349	0	ENST00000267101.3:c.499G>T	p.Val167Leu	p.V167L	ENST00000267101	NM_001982.3	167	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1131691025		P-0074140-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			79	46	295	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324868	31324868	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0074140-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	12	161	0	ENST00000412585.2:c.68G>A	p.Trp23Ter	p.W23*	ENST00000412585	NM_005514.6	23	tGg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0074140-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			51	21	289	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70345343	70345343	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0074140-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	15	326	0	ENST00000374080.3:c.2369C>A	p.Thr790Asn	p.T790N	ENST00000374080		790	aCt/aAt																																																																															
TOP1	7150	MSKCC	GRCh37	20	39713178	39713178	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074140-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			79	62	286	0	ENST00000361337.2:c.584C>A	p.Pro195Gln	p.P195Q	ENST00000361337	NM_003286.2	195	cCg/cAg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115280099	115280099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1039006812		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	92	277	0	ENST00000438362.2:c.533G>A	p.Arg178His	p.R178H	ENST00000438362	NM_001242891.1	178	cGt/cAt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255142	16255143	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-	rs764595221		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	83	501	2	ENST00000375759.3:c.2417_2418del	p.Arg806ThrfsTer14	p.R806Tfs*14	ENST00000375759	NM_015001.2	803	GAg/g																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261677	16261677	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745687072		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	150	528	2	ENST00000375759.3:c.8942C>T	p.Thr2981Met	p.T2981M	ENST00000375759	NM_015001.2	2981	aCg/aTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262313	16262313	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1462385531		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	116	417	0	ENST00000375759.3:c.9578G>A	p.Arg3193Gln	p.R3193Q	ENST00000375759	NM_015001.2	3193	cGg/cAg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798458	45798458	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750592289		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	157	483	0	ENST00000372115.3:c.511C>T	p.Arg171Trp	p.R171W	ENST00000372115	NM_001048171.1	171	Cgg/Tgg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	190	423	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65312344	65312344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	133	381	0	ENST00000342505.4:c.1975C>T	p.Arg659Cys	p.R659C	ENST00000342505	NM_002227.2	659	Cgc/Tgc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279528	123279528	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1159063118		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	133	395	0	ENST00000358487.5:c.904G>A	p.Gly302Arg	p.G302R	ENST00000358487	NM_000141.4	302	Ggg/Agg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851963	63851963	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779966636		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	120	453	0	ENST00000279873.7:c.2741C>T	p.Pro914Leu	p.P914L	ENST00000279873	NM_032199.2	914	cCg/cTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	18	233	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			71	26	133	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307291	118307291	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	48	189	2	ENST00000534358.1:c.69del	p.Arg24AlafsTer4	p.R24Afs*4	ENST00000534358	NM_005933.3	22	Ggg/gg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307348	118307348	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	31	165	0	ENST00000534358.1:c.126del	p.Pro45ArgfsTer105	p.P45Rfs*105	ENST00000534358	NM_005933.3	41	Ccc/cc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376290	118376290	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782434873		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	120	492	0	ENST00000534358.1:c.9683G>A	p.Arg3228His	p.R3228H	ENST00000534358	NM_005933.3	3228	cGt/cAt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948747	71948748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs760925109		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	77	505	6	ENST00000298229.2:c.3466dup	p.Arg1156ProfsTer59	p.R1156Pfs*59	ENST00000298229	NM_001567.3	1153	-/C																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524568	103524568	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	97	343	3	ENST00000355739.4:c.2705del	p.Asn902IlefsTer4	p.N902Ifs*4	ENST00000355739	NM_000123.3	900	cAa/ca																																																																															
LATS2	26524	MSKCC	GRCh37	13	21565492	21565492	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753428765		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	111	425	0	ENST00000382592.4:c.394G>A	p.Ala132Thr	p.A132T	ENST00000382592	NM_014572.2	132	Gcc/Acc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30194853	30194853	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs778489882		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	92	373	0	ENST00000331968.5:c.292T>C	p.Tyr98His	p.Y98H	ENST00000331968	NM_002742.2	98	Tat/Cat																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873759	35873759	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	101	318	0	ENST00000216797.5:c.92A>G	p.Asp31Gly	p.D31G	ENST00000216797	NM_020529.2	31	gAc/gGc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	93	409	2	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43767763	43767763	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs116252997		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	86	380	0	ENST00000382044.4:c.1085C>T	p.Thr362Met	p.T362M	ENST00000382044	NM_001141980.1	362	aCg/aTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031979	10031979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	119	416	0	ENST00000330684.3:c.844G>A	p.Asp282Asn	p.D282N	ENST00000330684	NM_001134407.1	282	Gat/Aat																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274027	10274027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	105	442	0	ENST00000330684.3:c.242G>A	p.Ser81Asn	p.S81N	ENST00000330684	NM_001134407.1	81	aGc/aAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2120560	2120560	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397515296		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	110	379	0	ENST00000219476.3:c.1820C>T	p.Ala607Val	p.A607V	ENST00000219476	NM_000548.3	607	gCg/gTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121791	2121792	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	91	380	0	ENST00000219476.3:c.1959_1960del	p.Gly654LeufsTer2	p.G654Lfs*2	ENST00000219476	NM_000548.3	651	ccAGag/ccag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778042	3778042	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs543811185		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	140	386	0	ENST00000262367.5:c.7006G>A	p.Ala2336Thr	p.A2336T	ENST00000262367	NM_004380.2	2336	Gcc/Acc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56864483	56864483	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	111	368	0	ENST00000308159.5:c.971A>G	p.Tyr324Cys	p.Y324C	ENST00000308159	NM_014669.4	324	tAc/tGc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822005	72822005	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	152	481	0	ENST00000268489.5:c.10170del	p.Val3391CysfsTer94	p.V3391Cfs*94	ENST00000268489	NM_006885.3	3390	aaA/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830915	72830918	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	174	501	0	ENST00000268489.5:c.5663_5666del	p.Glu1888AlafsTer25	p.E1888Afs*25	ENST00000268489	NM_006885.3	1888	gAAAGc/gc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	113	486	0	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350734	89350734	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146294483		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	92	391	0	ENST00000301030.4:c.2216C>T	p.Ser739Leu	p.S739L	ENST00000301030	NM_001256183.1	739	tCg/tTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	81	511	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730882026		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	119	332	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577590	7577590	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	117	352	0	ENST00000269305.4:c.691A>G	p.Thr231Ala	p.T231A	ENST00000269305	NM_001126112.2	231	Acc/Gcc																																																																															
YES1	7525	MSKCC	GRCh37	18	745962	745963	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	65	384	0	ENST00000314574.4:c.559_560del	p.Ser187Ter	p.S187*	ENST00000314574	NM_005433.3	187	AGt/t																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14629091	14629091	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs373251842		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	80	309	0	ENST00000254322.2:c.71A>G	p.Tyr24Cys	p.Y24C	ENST00000254322	NM_006145.1	24	tAc/tGc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276215	15276215	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748889237		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	24	344	0	ENST00000263388.2:c.5779G>A	p.Ala1927Thr	p.A1927T	ENST00000263388	NM_000435.2	1927	Gcc/Acc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18943157	18943157	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	83	250	1	ENST00000262803.5:c.144del	p.Gly49AlafsTer45	p.G49Afs*45	ENST00000262803	NM_002911.3	47	Ccc/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211883	36211883	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202218975		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	135	437	0	ENST00000222270.7:c.1634G>A	p.Arg545Gln	p.R545Q	ENST00000222270	NM_014727.1	545	cGa/cAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	97	588	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4090622	4090622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	109	292	0	ENST00000262948.5:c.1177G>A	p.Gly393Ser	p.G393S	ENST00000262948	NM_030662.3	393	Ggc/Agc																																																																															
AXL	558	MSKCC	GRCh37	19	41744408	41744408	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374067962		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	95	413	0	ENST00000301178.4:c.1028C>T	p.Thr343Met	p.T343M	ENST00000301178	NM_021913.4	343	aCg/aTg																																																																															
CD79A	973	MSKCC	GRCh37	19	42384741	42384741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	65	224	0	ENST00000221972.3:c.503G>A	p.Arg168Gln	p.R168Q	ENST00000221972	NM_021601.3	168	cGa/cAa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	144	520	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
CIC	23152	MSKCC	GRCh37	19	42795378	42795378	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	88	457	0	ENST00000575354.2:c.2462del	p.Gly821GlufsTer103	p.G821Efs*103	ENST00000575354	NM_015125.3	820	Ggg/gg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909523	50909523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	132	476	0	ENST00000440232.2:c.1327C>T	p.Arg443Trp	p.R443W	ENST00000440232	NM_002691.3	443	Cgg/Tgg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	101	402	1	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5212010	5212010	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1418979460		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	119	401	0	ENST00000357368.4:c.5021G>A	p.Gly1674Asp	p.G1674D	ENST00000357368	NM_002850.3	1674	gGc/gAc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158617589	158617589	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121912679		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	53	341	0	ENST00000263640.3:c.1067G>A	p.Gly356Asp	p.G356D	ENST00000263640	NM_001105.4	356	gGc/gAc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198268449	198268449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	104	344	0	ENST00000335508.6:c.1579G>A	p.Gly527Arg	p.G527R	ENST00000335508	NM_012433.2	527	Gga/Aga																																																																															
CASP8	841	MSKCC	GRCh37	2	202149799	202149799	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	94	449	0	ENST00000358485.4:c.1245del	p.Phe415LeufsTer26	p.F415Lfs*26	ENST00000358485	NM_001080125.1	414	Ttt/tt																																																																															
INHA	3623	MSKCC	GRCh37	2	220437173	220437173	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746580263		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	93	399	0	ENST00000243786.2:c.77G>A	p.Arg26Gln	p.R26Q	ENST00000243786	NM_002191.3	26	cGg/cAg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467484	25467484	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	137	405	0	ENST00000264709.3:c.1592A>G	p.Asp531Gly	p.D531G	ENST00000264709	NM_175629.2	531	gAc/gGc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703538	47703538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63749932		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	90	349	0	ENST00000233146.2:c.2038C>T	p.Arg680Ter	p.R680*	ENST00000233146	NM_000251.2	680	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	30946592	30946594	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs752094508		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	79	211	3	ENST00000375687.4:c.25_27del	p.Lys9del	p.K9del	ENST00000375687	NM_015338.5	5	cAGAag/cag																																																																															
SRC	6714	MSKCC	GRCh37	20	36024598	36024598	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	112	412	0	ENST00000358208.4:c.587A>G	p.Asn196Ser	p.N196S	ENST00000358208		196	aAc/aGc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119582392	119582392	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	173	447	0	ENST00000316626.5:c.1009A>G	p.Thr337Ala	p.T337A	ENST00000316626		337	Aca/Gca																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940342	49940342	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1224367583		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	130	458	0	ENST00000296474.3:c.701C>T	p.Ala234Val	p.A234V	ENST00000296474	NM_002447.2	234	gCg/gTg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436850	52436850	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs376519545		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	131	403	0	ENST00000460680.1:c.1928T>C	p.Ile643Thr	p.I643T	ENST00000460680	NM_004656.3	643	aTt/aCt																																																																															
TET2	54790	MSKCC	GRCh37	4	106164913	106164913	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs898441677		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	124	315	0	ENST00000380013.4:c.3781C>T	p.Arg1261Cys	p.R1261C	ENST00000380013	NM_001127208.2	1261	Cgc/Tgc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1959714	1959714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	111	335	0	ENST00000382895.3:c.2936G>A	p.Arg979Gln	p.R979Q	ENST00000382895	NM_133330.2	979	cGa/cAa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131953826	131953826	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs368980595		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	61	356	0	ENST00000265335.6:c.3229C>T	p.Arg1077Ter	p.R1077*	ENST00000265335		1077	Cga/Tga																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945751	38945751	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	91	367	0	ENST00000357387.3:c.4475T>A	p.Ile1492Lys	p.I1492K	ENST00000357387	NM_152756.3	1492	aTa/aAa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589576	67589576	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1289537429		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	8	303	0	ENST00000274335.5:c.1344del	p.Lys448AsnfsTer32	p.K448Nfs*32	ENST00000274335		447	Aaa/aa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79950727	79950727	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1574197		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	77	302	0	ENST00000265081.6:c.181G>C	p.Ala61Pro	p.A61P	ENST00000265081	NM_002439.4	61	Gca/Cca																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519505	137519506	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs780346130		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	80	414	4	ENST00000367739.4:c.1132_1133del	p.Ser378PhefsTer6	p.S378Ffs*6	ENST00000367739	NM_000416.2	378	AGt/t																																																																															
PARK2	5071	MSKCC	GRCh37	6	161781122	161781122	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	24	298	0	ENST00000366898.1:c.1283del	p.Asn428MetfsTer7	p.N428Mfs*7	ENST00000366898	NM_004562.2	428	aAt/at																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679695	30679696	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	97	513	0	ENST00000376406.3:c.2023_2024del	p.Glu675ThrfsTer10	p.E675Tfs*10	ENST00000376406	NM_014641.2	675	GAa/a																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324064	31324064	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	81	396	0	ENST00000412585.2:c.499A>G	p.Thr167Ala	p.T167A	ENST00000412585	NM_005514.6	167	Acc/Gcc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975459	13975459	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80157564		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	101	421	0	ENST00000405192.2:c.428C>T	p.Thr143Met	p.T143M	ENST00000405192	NM_001163147.1	143	aCg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874149	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	87	422	1	ENST00000262189.6:c.8389_8390del	p.Lys2797GlyfsTer11	p.K2797Gfs*11	ENST00000262189	NM_170606.2	2797	AAg/g																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346220	152346220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	80	420	2	ENST00000359321.1:c.350del	p.Leu117TrpfsTer17	p.L117Wfs*17	ENST00000359321	NM_005431.1	117	tTg/tg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	88	361	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772901	135772901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748845915		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	87	367	0	ENST00000298552.3:c.2722C>T	p.Arg908Trp	p.R908W	ENST00000298552	NM_001162426.1	908	Cgg/Tgg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391815	139391815	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs572960572		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	108	509	0	ENST00000277541.6:c.6376G>A	p.Gly2126Arg	p.G2126R	ENST00000277541	NM_017617.3	2126	Gga/Aga																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393394	139393394	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1374171839		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	137	428	0	ENST00000277541.6:c.6137T>C	p.Val2046Ala	p.V2046A	ENST00000277541	NM_017617.3	2046	gTg/gCg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399458	139399458	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752839680		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	130	450	0	ENST00000277541.6:c.4685C>T	p.Ala1562Val	p.A1562V	ENST00000277541	NM_017617.3	1562	gCg/gTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413909	139413909	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376104770		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	120	366	0	ENST00000277541.6:c.851C>T	p.Pro284Leu	p.P284L	ENST00000277541	NM_017617.3	284	cCg/cTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8633407	8633407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	71	338	0	ENST00000356435.5:c.262C>T	p.Arg88Trp	p.R88W	ENST00000356435		88	Cgg/Tgg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44928852	44928852	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750754452		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	47	161	0	ENST00000377967.4:c.1952C>T	p.Ser651Leu	p.S651L	ENST00000377967	NM_021140.2	651	tCg/tTg																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117753453	117753453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	76	315	0	ENST00000369458.3:c.25T>C	p.Phe9Leu	p.F9L	ENST00000369458	NM_024626.3	9	Ttc/Ctc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258838	16258838	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	161	462	0	ENST00000375759.3:c.6103G>T	p.Glu2035Ter	p.E2035*	ENST00000375759	NM_015001.2	2035	Gag/Tag																																																																															
NUF2	83540	MSKCC	GRCh37	1	163298087	163298087	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	62	332	0	ENST00000271452.3:c.268A>G	p.Thr90Ala	p.T90A	ENST00000271452	NM_145697.2	90	Act/Gct																																																																															
NADK	65220	MSKCC	GRCh37	1	1684345	1684345	+	stop_lost	Nonstop_Mutation	SNP	A	A	T			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	117	401	0	ENST00000341426.5:c.1339T>A	p.Ter447LysextTer40	p.*447Kext*40	ENST00000341426	NM_023018.4	447	Tag/Aag																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176132112	176132112	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	35	250	0	ENST00000367669.3:c.655T>C	p.Trp219Arg	p.W219R	ENST00000367669	NM_022457.5	219	Tgg/Cgg																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612636	228612636	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	133	468	0	ENST00000366696.1:c.391A>T	p.Ile131Phe	p.I131F	ENST00000366696	NM_003493.2	131	Atc/Ttc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716115	243716115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	65	334	0	ENST00000263826.5:c.1079T>C	p.Met360Thr	p.M360T	ENST00000263826	NM_005465.4	360	aTg/aCg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097727	27097727	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	110	398	0	ENST00000324856.7:c.3316A>T	p.Lys1106Ter	p.K1106*	ENST00000324856	NM_006015.4	1106	Aag/Tag																																																																															
MPL	4352	MSKCC	GRCh37	1	43805672	43805672	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	115	378	0	ENST00000372470.3:c.728T>C	p.Ile243Thr	p.I243T	ENST00000372470	NM_005373.2	243	aTc/aCc																																																																															
MPL	4352	MSKCC	GRCh37	1	43812607	43812607	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	92	405	0	ENST00000372470.3:c.1308+2T>C		p.X436_splice	ENST00000372470	NM_005373.2	436																																																																																
MUTYH	4595	MSKCC	GRCh37	1	45795028	45795031	+	frameshift_variant	Frame_Shift_Del	DEL	GAAA	GAAA	-			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	140	411	0	ENST00000372115.3:c.1555_1558del	p.Phe519GlyfsTer37	p.F519Gfs*37	ENST00000372115	NM_001048171.1	519	TTTCgg/gg																																																																															
JUN	3725	MSKCC	GRCh37	1	59248138	59248138	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	150	421	0	ENST00000371222.2:c.605A>G	p.Gln202Arg	p.Q202R	ENST00000371222	NM_002228.3	202	cAg/cGg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65311243	65311243	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	133	457	0	ENST00000342505.4:c.2068T>C	p.Trp690Arg	p.W690R	ENST00000342505	NM_002227.2	690	Tgg/Cgg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339051	65339051	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	119	421	0	ENST00000342505.4:c.483+2T>C		p.X161_splice	ENST00000342505	NM_002227.2	161																																																																																
PIK3CD	5293	MSKCC	GRCh37	1	9775946	9775946	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	85	379	0	ENST00000377346.4:c.410A>G	p.Asn137Ser	p.N137S	ENST00000377346	NM_005026.3	137	aAc/aGc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781842	9781842	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	64	321	0	ENST00000377346.4:c.1979T>C	p.Val660Ala	p.V660A	ENST00000377346	NM_005026.3	660	gTg/gCg																																																																															
SUFU	51684	MSKCC	GRCh37	10	104359292	104359292	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	117	334	0	ENST00000369902.3:c.1013A>G	p.Asp338Gly	p.D338G	ENST00000369902	NM_016169.3	338	gAc/gGc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851028	63851028	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	137	487	0	ENST00000279873.7:c.1806G>C	p.Gln602His	p.Q602H	ENST00000279873	NM_032199.2	602	caG/caC																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692940	89692941	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	30	341	0	ENST00000371953.3:c.428dup	p.Lys144GlnfsTer36	p.K144Qfs*36	ENST00000371953	NM_000314.4	142	cgg/cGgg																																																																															
YAP1	10413	MSKCC	GRCh37	11	102094435	102094435	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	126	308	0	ENST00000282441.5:c.1115A>T	p.Gln372Leu	p.Q372L	ENST00000282441	NM_001130145.2	372	cAg/cTg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195740	102195740	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	92	414	0	ENST00000263464.3:c.500A>G	p.Asn167Ser	p.N167S	ENST00000263464	NM_001165.4	167	aAt/aGt																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125507370	125507370	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	79	374	0	ENST00000428830.2:c.745A>G	p.Asn249Asp	p.N249D	ENST00000428830	NM_001114121.2	249	Aat/Gat																																																																															
IGF2	3481	MSKCC	GRCh37	11	2156707	2156707	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	146	471	0	ENST00000434045.2:c.215T>C	p.Leu72Ser	p.L72S	ENST00000434045	NM_001127598.1	72	tTg/tCg																																																																															
CCND1	595	MSKCC	GRCh37	11	69462864	69462864	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs776600964		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	125	387	0	ENST00000227507.2:c.677A>G	p.Tyr226Cys	p.Y226C	ENST00000227507	NM_053056.2	226	tAc/tGc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633589	69633589	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	79	307	0	ENST00000334134.2:c.113A>G	p.His38Arg	p.H38R	ENST00000334134	NM_005247.2	38	cAc/cGc																																																																															
LMO1	4004	MSKCC	GRCh37	11	8246165	8246165	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	108	297	0	ENST00000335790.3:c.469T>C	p.Ter157GlnextTer39	p.*157Qext*39	ENST00000335790	NM_002315.2	157	Taa/Caa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94211969	94211969	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	62	368	0	ENST00000323929.3:c.476T>C	p.Val159Ala	p.V159A	ENST00000323929	NM_005591.3	159	gTg/gCg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856034	111856034	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	133	386	0	ENST00000341259.2:c.85T>C	p.Phe29Leu	p.F29L	ENST00000341259	NM_005475.2	29	Ttc/Ctc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856215	111856215	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	83	389	0	ENST00000341259.2:c.266A>G	p.Tyr89Cys	p.Y89C	ENST00000341259	NM_005475.2	89	tAc/tGc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12006414	12006414	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	89	489	0	ENST00000396373.4:c.382A>G	p.Ile128Val	p.I128V	ENST00000396373	NM_001987.4	128	Att/Gtt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12006452	12006452	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	111	459	0	ENST00000396373.4:c.420A>G	p.Ile140Met	p.I140M	ENST00000396373	NM_001987.4	140	atA/atG																																																																															
MSI1	4440	MSKCC	GRCh37	12	120791155	120791155	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	161	405	0	ENST00000257552.2:c.680A>G	p.Tyr227Cys	p.Y227C	ENST00000257552	NM_002442.3	227	tAc/tGc																																																																															
POLE	5426	MSKCC	GRCh37	12	133225933	133225933	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	98	397	0	ENST00000320574.5:c.3964A>G	p.Thr1322Ala	p.T1322A	ENST00000320574	NM_006231.2	1322	Act/Gct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49430950	49430950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	114	403	0	ENST00000301067.7:c.10189G>A	p.Ala3397Thr	p.A3397T	ENST00000301067	NM_003482.3	3397	Gca/Aca																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524562	103524562	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	90	343	0	ENST00000355739.4:c.2693A>T	p.Glu898Val	p.E898V	ENST00000355739	NM_000123.3	898	gAa/gTa																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281296	49281296	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	73	428	0	ENST00000282018.3:c.343T>C	p.Ser115Pro	p.S115P	ENST00000282018	NM_020377.2	115	Tct/Cct																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873768	35873768	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	100	309	0	ENST00000216797.5:c.83A>G	p.Asp28Gly	p.D28G	ENST00000216797	NM_020529.2	28	gAc/gGc																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873810	35873810	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	95	308	0	ENST00000216797.5:c.41A>G	p.Glu14Gly	p.E14G	ENST00000216797	NM_020529.2	14	gAg/gGg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061744	38061744	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	132	488	0	ENST00000250448.2:c.245T>C	p.Val82Ala	p.V82A	ENST00000250448	NM_004496.3	82	gTa/gCa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81606180	81606180	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	106	451	0	ENST00000298171.2:c.850T>C	p.Cys284Arg	p.C284R	ENST00000298171	NM_000369.2	284	Tgt/Cgt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95571483	95571483	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	115	332	0	ENST00000343455.3:c.3194T>C	p.Leu1065Ser	p.L1065S	ENST00000343455	NM_177438.2	1065	tTg/tCg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95572388	95572388	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	85	370	0	ENST00000343455.3:c.2977A>G	p.Thr993Ala	p.T993A	ENST00000343455	NM_177438.2	993	Aca/Gca																																																																															
DICER1	23405	MSKCC	GRCh37	14	95595951	95595951	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	72	332	0	ENST00000343455.3:c.592T>A	p.Ser198Thr	p.S198T	ENST00000343455	NM_177438.2	198	Tca/Aca																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43772116	43772116	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	90	375	0	ENST00000382044.4:c.599T>C	p.Leu200Pro	p.L200P	ENST00000382044	NM_001141980.1	200	cTa/cCa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2100444	2100444	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	115	312	0	ENST00000219476.3:c.182T>C	p.Ile61Thr	p.I61T	ENST00000219476	NM_000548.3	61	aTa/aCa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778716	3778716	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	28	461	0	ENST00000262367.5:c.6332A>T	p.Asn2111Ile	p.N2111I	ENST00000262367	NM_004380.2	2111	aAt/aTt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778728	3778728	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	27	455	0	ENST00000262367.5:c.6320A>G	p.Lys2107Arg	p.K2107R	ENST00000262367	NM_004380.2	2107	aAg/aGg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778833	3778833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	125	450	0	ENST00000262367.5:c.6215G>A	p.Arg2072Gln	p.R2072Q	ENST00000262367	NM_004380.2	2072	cGg/cAg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396496	396496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	115	461	0	ENST00000262320.3:c.530T>C	p.Ile177Thr	p.I177T	ENST00000262320	NM_003502.3	177	aTc/aCc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857169	9857169	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	118	422	1	ENST00000330684.3:c.4232A>G	p.Tyr1411Cys	p.Y1411C	ENST00000330684	NM_001134407.1	1411	tAc/tGc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004861	16004861	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	126	388	0	ENST00000268712.3:c.2393T>C	p.Val798Ala	p.V798A	ENST00000268712	NM_006311.3	798	gTa/gCa																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489561	40489561	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	140	423	0	ENST00000264657.5:c.689A>G	p.Tyr230Cys	p.Y230C	ENST00000264657	NM_139276.2	230	tAc/tGc																																																																															
AURKB	9212	MSKCC	GRCh37	17	8109926	8109926	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	107	385	0	ENST00000585124.1:c.569A>G	p.Tyr190Cys	p.Y190C	ENST00000585124	NM_004217.3	190	tAc/tGc																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61310672	61310672	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	96	376	0	ENST00000341074.5:c.140A>T	p.Asp47Val	p.D47V	ENST00000341074	NM_002974.2	47	gAc/gTc																																																																															
YES1	7525	MSKCC	GRCh37	18	724540	724540	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			74	24	115	0	ENST00000314574.4:c.1516A>G	p.Asn506Asp	p.N506D	ENST00000314574	NM_005433.3	506	Aat/Gat																																																																															
STK11	6794	MSKCC	GRCh37	19	1221963	1221963	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	121	284	0	ENST00000326873.7:c.878A>G	p.Glu293Gly	p.E293G	ENST00000326873	NM_000455.4	293	gAa/gGa																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18272087	18272087	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	107	492	0	ENST00000222254.8:c.599-2A>G		p.X200_splice	ENST00000222254	NM_005027.3	200																																																																																
UPF1	5976	MSKCC	GRCh37	19	18963017	18963017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	129	413	0	ENST00000262803.5:c.884G>A	p.Arg295Gln	p.R295Q	ENST00000262803	NM_002911.3	295	cGg/cAg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2223427	2223427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	120	439	0	ENST00000398665.3:c.3538T>C	p.Tyr1180His	p.Y1180H	ENST00000398665	NM_032482.2	1180	Tac/Cac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212038	36212038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	123	490	0	ENST00000222270.7:c.1789C>T	p.Pro597Ser	p.P597S	ENST00000222270	NM_014727.1	597	Cct/Tct																																																																															
AKT2	208	MSKCC	GRCh37	19	40741849	40741849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	153	438	0	ENST00000392038.2:c.1123C>T	p.Pro375Ser	p.P375S	ENST00000392038	NM_001626.4	375	Ccc/Tcc																																																																															
ERF	2077	MSKCC	GRCh37	19	42752892	42752892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	142	493	0	ENST00000222329.4:c.1372del	p.Arg458ValfsTer73	p.R458Vfs*73	ENST00000222329	NM_006494.2	458	Cgt/gt																																																																															
CIC	23152	MSKCC	GRCh37	19	42791825	42791826	+	stop_gained	Nonsense_Mutation	DNP	GT	GT	AC			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	150	499	0	ENST00000575354.2:c.711_712inv	p.Trp237_Trp238delinsTer	p.W237_W238delins*	ENST00000575354	NM_015125.3	237	tgGTgg/tgACgg																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222677	6222677	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	35	415	0	ENST00000252674.7:c.565A>C	p.Ser189Arg	p.S189R	ENST00000252674	NM_005934.3	189	Agc/Cgc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663451	227663451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	117	347	0	ENST00000305123.5:c.4G>A	p.Ala2Thr	p.A2T	ENST00000305123	NM_005544.2	2	Gcg/Acg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213024	39213024	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	67	437	0	ENST00000402219.2:c.3943A>G	p.Thr1315Ala	p.T1315A	ENST00000402219	NM_005633.3	1315	Aca/Gca																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030598	48030598	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	115	460	0	ENST00000234420.5:c.3212A>C	p.Asp1071Ala	p.D1071A	ENST00000234420	NM_000179.2	1071	gAt/gCt																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62322203	62322203	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	113	352	0	ENST00000482936.1:c.2459A>G	p.Tyr820Cys	p.Y820C	ENST00000482936		820	tAt/tGt																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845327	42845327	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	125	404	0	ENST00000398585.3:c.935T>A	p.Val312Asp	p.V312D	ENST00000398585	NM_001135099.1	312	gTc/gAc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21346095	21346095	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140013693		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	100	372	0	ENST00000215739.8:c.970G>A	p.Val324Ile	p.V324I	ENST00000215739	NM_006767.3	324	Gtc/Atc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446363	29446363	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	82	347	0	ENST00000544604.2:c.2194A>G	p.Thr732Ala	p.T732A	ENST00000544604	NM_001206998.1	732	Acc/Gcc																																																																															
EP300	2033	MSKCC	GRCh37	22	41573347	41573347	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	116	544	0	ENST00000263253.7:c.5632A>G	p.Thr1878Ala	p.T1878A	ENST00000263253	NM_001429.3	1878	Acc/Gcc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713843	30713843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	161	426	0	ENST00000359013.4:c.1243G>A	p.Asp415Asn	p.D415N	ENST00000359013	NM_001024847.2	415	Gac/Aac																																																																															
MLH1	4292	MSKCC	GRCh37	3	37059084	37059084	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	77	402	0	ENST00000231790.2:c.878A>G	p.Tyr293Cys	p.Y293C	ENST00000231790	NM_000249.3	293	tAc/tGc																																																																															
MYD88	4615	MSKCC	GRCh37	3	38181987	38181987	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	132	498	0	ENST00000396334.3:c.611T>C	p.Leu204Ser	p.L204S	ENST00000396334	NM_002468.4	204	tTg/tCg																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182262	38182262	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	137	426	0	ENST00000396334.3:c.698T>C	p.Val233Ala	p.V233A	ENST00000396334	NM_002468.4	233	gTg/gCg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280690	41280690	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	103	460	0	ENST00000349496.5:c.2203A>C	p.Met735Leu	p.M735L	ENST00000349496	NM_001904.3	735	Atg/Ctg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163196	47163196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	44	407	0	ENST00000409792.3:c.2930C>T	p.Pro977Leu	p.P977L	ENST00000409792	NM_014159.6	977	cCa/cTa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436866	52436866	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	124	415	0	ENST00000460680.1:c.1912T>C	p.Cys638Arg	p.C638R	ENST00000460680	NM_004656.3	638	Tgt/Cgt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026120	71026120	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	120	276	0	ENST00000318789.4:c.1502A>G	p.Tyr501Cys	p.Y501C	ENST00000318789	NM_032682.5	501	tAc/tGc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139798	55139798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763237825		P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	132	438	0	ENST00000257290.5:c.1459C>T	p.Arg487Cys	p.R487C	ENST00000257290	NM_006206.4	487	Cgt/Tgt																																																																															
ALB	213	MSKCC	GRCh37	4	74282054	74282054	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	87	280	0	ENST00000295897.4:c.1273T>C	p.Tyr425His	p.Y425H	ENST00000295897	NM_000477.5	425	Tac/Cac																																																																															
RAD50	10111	MSKCC	GRCh37	5	131976413	131976413	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	114	391	0	ENST00000265335.6:c.3668T>A	p.Leu1223His	p.L1223H	ENST00000265335		1223	cTc/cAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637379	176637379	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	47	520	0	ENST00000439151.2:c.1979A>G	p.Asn660Ser	p.N660S	ENST00000439151	NM_022455.4	660	aAc/aGc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176710791	176710791	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	93	312	0	ENST00000439151.2:c.6013C>T	p.Arg2005Ter	p.R2005*	ENST00000439151	NM_022455.4	2005	Cga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046251	180046251	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	96	283	0	ENST00000261937.6:c.2761+2T>C		p.X921_splice	ENST00000261937	NM_182925.4	921																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56111644	56111644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	51	319	0	ENST00000399503.3:c.244G>A	p.Ala82Thr	p.A82T	ENST00000399503	NM_005921.1	82	Gcc/Acc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755527	57755527	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	91	313	0	ENST00000274289.3:c.260T>C	p.Val87Ala	p.V87A	ENST00000274289	NM_006622.3	87	gTg/gCg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79952263	79952263	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	128	402	0	ENST00000265081.6:c.271T>G	p.Leu91Val	p.L91V	ENST00000265081	NM_002439.4	91	Ttg/Gtg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86659318	86659318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	66	287	0	ENST00000274376.6:c.1607G>A	p.Gly536Asp	p.G536D	ENST00000274376	NM_002890.2	536	gGc/gAc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106554851	106554851	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	122	398	0	ENST00000369096.4:c.1968G>T	p.Glu656Asp	p.E656D	ENST00000369096	NM_001198.3	656	gaG/gaT																																																																															
SESN1	27244	MSKCC	GRCh37	6	109308761	109308761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	58	281	0	ENST00000436639.2:c.1642C>T	p.Arg548Cys	p.R548C	ENST00000436639	NM_014454.2	548	Cgc/Tgc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117679115	117679115	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	18	394	0	ENST00000368508.3:c.3706A>G	p.Arg1236Gly	p.R1236G	ENST00000368508	NM_002944.2	1236	Agg/Ggg																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402761	20402761	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	117	396	0	ENST00000346618.3:c.298T>C	p.Tyr100His	p.Y100H	ENST00000346618	NM_001949.4	100	Tac/Cac																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225557	26225557	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	188	553	0	ENST00000360408.1:c.175A>G	p.Thr59Ala	p.T59A	ENST00000360408	NM_003532.2	59	Acc/Gcc																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250548	26250548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	156	581	0	ENST00000446824.2:c.286G>A	p.Ala96Thr	p.A96T	ENST00000446824	NM_021018.2	96	Gcc/Acc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32813529	32813529	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	89	308	0	ENST00000354258.4:c.2254T>C	p.Tyr752His	p.Y752H	ENST00000354258	NM_000593.5	752	Tac/Cac																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815694	32815694	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	115	392	0	ENST00000354258.4:c.1920+2T>C		p.X640_splice	ENST00000354258	NM_000593.5	640																																																																																
DAXX	1616	MSKCC	GRCh37	6	33288329	33288329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	162	470	0	ENST00000374542.5:c.1079G>T	p.Arg360Leu	p.R360L	ENST00000374542	NM_001141970.1	360	cGc/cTc																																																																															
CCND3	896	MSKCC	GRCh37	6	41904431	41904431	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	32	371	0	ENST00000372991.4:c.577T>C	p.Tyr193His	p.Y193H	ENST00000372991	NM_001760.3	193	Tat/Cat																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94128998	94128998	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	118	394	0	ENST00000369303.4:c.62T>C	p.Phe21Ser	p.F21S	ENST00000369303	NM_004440.3	21	tTt/tCt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545593	106545593	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	96	373	0	ENST00000359195.3:c.3070A>G	p.Thr1024Ala	p.T1024A	ENST00000359195	NM_002649.2	1024	Aca/Gca																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194916	29194916	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	124	329	0	ENST00000240100.2:c.812A>G	p.Asp271Gly	p.D271G	ENST00000240100	NM_001394.6	271	gAc/gGc																																																																															
NBN	4683	MSKCC	GRCh37	8	90993738	90993738	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	48	267	0	ENST00000265433.3:c.185A>T	p.Glu62Val	p.E62V	ENST00000265433	NM_002485.4	62	gAa/gTa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135776205	135776205	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	114	407	0	ENST00000298552.3:c.2522T>C	p.Val841Ala	p.V841A	ENST00000298552	NM_001162426.1	841	gTc/gCc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401419	139401419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	120	392	0	ENST00000277541.6:c.3650A>G	p.His1217Arg	p.H1217R	ENST00000277541	NM_017617.3	1217	cAc/cGc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410130	139410130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	104	399	0	ENST00000277541.6:c.1708T>C	p.Cys570Arg	p.C570R	ENST00000277541	NM_017617.3	570	Tgc/Cgc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8339005	8339005	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	105	361	0	ENST00000356435.5:c.5296T>A	p.Tyr1766Asn	p.Y1766N	ENST00000356435		1766	Tac/Aac																																																																															
XIAP	331	MSKCC	GRCh37	X	123019828	123019828	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			48	82	210	0	ENST00000355640.3:c.316A>G	p.Thr106Ala	p.T106A	ENST00000355640		106	Aca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578528	7578528	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0074616-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	66	454	0	ENST00000269305.4:c.402T>G	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	ttT/ttG																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971170	21971170	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074616-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	76	492	1	ENST00000304494.5:c.188T>A	p.Leu63Gln	p.L63Q	ENST00000304494	NM_000077.4	63	cTg/cAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971179	21971179	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs36204594		P-0074616-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	74	497	0	ENST00000304494.5:c.179C>A	p.Ala60Glu	p.A60E	ENST00000304494	NM_000077.4	60	gCg/gAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0074616-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	87	333	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348863	89348863	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0074616-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	90	479	0	ENST00000301030.4:c.4087C>T	p.Arg1363Ter	p.R1363*	ENST00000301030	NM_001256183.1	1363	Cga/Tga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2130379	2130379	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0074616-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	64	443	0	ENST00000219476.3:c.3610+1G>T		p.X1204_splice	ENST00000219476	NM_000548.3	1204																																																																																
ID3	3399	MSKCC	GRCh37	1	23885794	23885794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	24	233	0	ENST00000374561.5:c.124G>A	p.Asp42Asn	p.D42N	ENST00000374561	NM_002167.4	42	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540652		P-0074625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	92	191	0	ENST00000269305.4:c.743G>C	p.Arg248Pro	p.R248P	ENST00000269305	NM_001126112.2	248	cGg/cCg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272435	15272435	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752977489		P-0074625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	44	257	0	ENST00000263388.2:c.6004G>A	p.Asp2002Asn	p.D2002N	ENST00000263388	NM_000435.2	2002	Gac/Aac																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098806	178098806	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	74	252	0	ENST00000397062.3:c.239C>A	p.Thr80Lys	p.T80K	ENST00000397062	NM_006164.4	80	aCa/aAa																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204928	128204928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	38	231	0	ENST00000341105.2:c.513C>A	p.Phe171Leu	p.F171L	ENST00000341105	NM_032638.4	171	ttC/ttA																																																																															
APC	324	MSKCC	GRCh37	5	112175921	112175921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0074625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	28	279	0	ENST00000257430.4:c.4630G>T	p.Glu1544Ter	p.E1544*	ENST00000257430	NM_000038.5	1544	Gaa/Taa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86682712	86682712	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0074625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	27	212	1	ENST00000274376.6:c.2917G>T	p.Glu973Ter	p.E973*	ENST00000274376	NM_002890.2	973	Gaa/Taa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11308060	11308060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	54	238	0	ENST00000361445.4:c.932G>T	p.Arg311Leu	p.R311L	ENST00000361445	NM_004958.3	311	cGt/cTt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162743337	162743337	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	59	254	0	ENST00000367921.3:c.1807G>T	p.Val603Phe	p.V603F	ENST00000367921	NM_006182.2	603	Gtc/Ttc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447761	49447761	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0074625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	73	254	0	ENST00000301067.7:c.673G>C	p.Glu225Gln	p.E225Q	ENST00000301067	NM_003482.3	225	Gag/Cag																																																																															
MGA	23269	MSKCC	GRCh37	15	42041429	42041429	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0074625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	65	288	0	ENST00000219905.7:c.5624C>A	p.Ser1875Ter	p.S1875*	ENST00000219905	NM_001164273.1	1875	tCa/tAa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43707828	43707828	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	16	247	0	ENST00000382044.4:c.5053G>T	p.Ala1685Ser	p.A1685S	ENST00000382044	NM_001141980.1	1685	Gcc/Tcc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78921100	78921100	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	71	228	0	ENST00000306801.3:c.3214G>T	p.Ala1072Ser	p.A1072S	ENST00000306801	NM_020761.2	1072	Gcc/Tcc																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61323157	61323157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	33	219	0	ENST00000283752.5:c.907G>A	p.Gly303Arg	p.G303R	ENST00000283752	NM_006919.2	303	Gga/Aga																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902152	50902152	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	74	214	0	ENST00000440232.2:c.44C>A	p.Pro15Gln	p.P15Q	ENST00000440232	NM_002691.3	15	cCa/cAa																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288425	21288426	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0074625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	38	286	0	ENST00000354336.3:c.670_671delinsTT	p.Gly224Leu	p.G224L	ENST00000354336	NM_005207.3	224	GGg/TTg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117684022	117684022	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0074625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	37	284	0	ENST00000368508.3:c.3125C>A	p.Ser1042Ter	p.S1042*	ENST00000368508	NM_002944.2	1042	tCa/tAa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527550	157527550	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0074625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	19	236	0	ENST00000346085.5:c.5275G>T	p.Glu1759Ter	p.E1759*	ENST00000346085	NM_020732.3	1759	Gaa/Taa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468036	50468036	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	70	239	0	ENST00000331340.3:c.1271A>T	p.Asn424Ile	p.N424I	ENST00000331340	NM_006060.4	424	aAc/aTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528740	8528740	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	77	285	0	ENST00000356435.5:c.392del	p.Gly131AlafsTer4	p.G131Afs*4	ENST00000356435		131	gGc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0074632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	136	245	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0074632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	95	312	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7989402	7989402	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150641093		P-0074632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	101	376	0	ENST00000319144.4:c.284G>A	p.Arg95His	p.R95H	ENST00000319144	NM_001139.2	95	cGt/cAt																																																																															
YES1	7525	MSKCC	GRCh37	18	732915	732915	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs542568142		P-0074632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	42	358	0	ENST00000314574.4:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000314574	NM_005433.3	448	Cgg/Tgg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0074632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	83	313	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874147	151874148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs771193709		P-0074632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	154	396	3	ENST00000262189.6:c.8390dup	p.Glu2798GlyfsTer11	p.E2798Gfs*11	ENST00000262189	NM_170606.2	2797	aag/aaAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107083	27107094	+	inframe_deletion	In_Frame_Del	DEL	CGGCGGGCTGCC	CGGCGGGCTGCC	-			P-0074632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	162	419	0	ENST00000324856.7:c.6696_6707del	p.Arg2233_Arg2236del	p.R2233_R2236del	ENST00000324856	NM_006015.4	2232	CGGCGGGCTGCC/-																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031832	10031832	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0074632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	83	385	0	ENST00000330684.3:c.991A>C	p.Met331Leu	p.M331L	ENST00000330684	NM_001134407.1	331	Atg/Ctg																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345825	152345825	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	53	384	0	ENST00000359321.1:c.745A>T	p.Ser249Cys	p.S249C	ENST00000359321	NM_005431.1	249	Agc/Tgc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341976	8341976	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0074632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	47	383	0	ENST00000356435.5:c.4664C>G	p.Ala1555Gly	p.A1555G	ENST00000356435		1555	gCg/gGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0074634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	40	319	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0074634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	62	369	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39285854	39285854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	26	236	0	ENST00000402219.2:c.305C>G	p.Pro102Arg	p.P102R	ENST00000402219	NM_005633.3	102	cCt/cGt																																																																															
ALK	238	MSKCC	GRCh37	2	29940524	29940524	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	38	317	0	ENST00000389048.3:c.707C>G	p.Pro236Arg	p.P236R	ENST00000389048	NM_004304.4	236	cCt/cGt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497284	149497284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757545741		P-0074634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	32	281	0	ENST00000261799.4:c.3034G>A	p.Val1012Met	p.V1012M	ENST00000261799	NM_002609.3	1012	Gtg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248980	55248981	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	TCCAGGAAGCCT			P-0074680-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	47	312	0	ENST00000275493.2:c.2284-5_2290dup		p.X762_splice	ENST00000275493	NM_005228.3	762																																																																																
HIST1H3H	8357	MSKCC	GRCh37	6	27777972	27777972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074680-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	41	435	0	ENST00000369163.2:c.121C>T	p.Arg41Cys	p.R41C	ENST00000369163	NM_003536.2	41	Cgc/Tgc																																																																															
PARK2	5071	MSKCC	GRCh37	6	161807845	161807845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074680-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	30	305	0	ENST00000366898.1:c.1148C>A	p.Ala383Asp	p.A383D	ENST00000366898	NM_004562.2	383	gCc/gAc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467127	25467127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074680-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	49	367	0	ENST00000264709.3:c.1748G>T	p.Cys583Phe	p.C583F	ENST00000264709	NM_175629.2	583	tGc/tTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32181030	32181030	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0074680-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	21	259	0	ENST00000375023.3:c.2321-1G>T		p.X774_splice	ENST00000375023	NM_004557.3	774																																																																																
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074238-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	89	315	1	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927977	178927982	+	inframe_deletion	In_Frame_Del	DEL	CACTGT	CACTGT	-			P-0074238-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	23	202	0	ENST00000263967.3:c.1256_1261del	p.His419_Cys420del	p.H419_C420del	ENST00000263967	NM_006218.2	419	CACTGT/-																																																																															
HGF	3082	MSKCC	GRCh37	7	81381528	81381528	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776090604		P-0074238-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			361	23	230	0	ENST00000222390.5:c.533G>A	p.Arg178Gln	p.R178Q	ENST00000222390	NM_000601.4	178	cGa/cAa																																																																															
MPL	4352	MSKCC	GRCh37	1	43812243	43812243	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074238-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			445	34	261	0	ENST00000372470.3:c.1108A>G	p.Thr370Ala	p.T370A	ENST00000372470	NM_005373.2	370	Aca/Gca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518228	187518228	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs199692977		P-0074238-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	37	282	0	ENST00000441802.2:c.12466G>T	p.Glu4156Ter	p.E4156*	ENST00000441802	NM_005245.3	4156	Gag/Tag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212576805	212576805	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074238-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			192	26	209	0	ENST00000342788.4:c.1094A>T	p.Asn365Ile	p.N365I	ENST00000342788	NM_005235.2	365	aAt/aTt																																																																															
PHF6	84295	MSKCC	GRCh37	X	133547979	133547979	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074238-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			121	30	100	0	ENST00000332070.3:c.712G>T	p.Ala238Ser	p.A238S	ENST00000332070	NM_032458.2	238	Gcc/Tcc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43783934	43783934	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074238-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			446	65	258	0	ENST00000382044.4:c.304A>T	p.Asn102Tyr	p.N102Y	ENST00000382044	NM_001141980.1	102	Aac/Tac																																																																															
TET1	80312	MSKCC	GRCh37	10	70333441	70333441	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074238-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			434	33	268	0	ENST00000373644.4:c.1346G>T	p.Trp449Leu	p.W449L	ENST00000373644	NM_030625.2	449	tGg/tTg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748053	41748053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074238-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			171	10	75	0	ENST00000226382.2:c.716G>A	p.Gly239Asp	p.G239D	ENST00000226382	NM_003924.3	239	gGc/gAc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41267742	41267742	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs80358043		P-0074238-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	32	194	0	ENST00000357654.3:c.134+1G>T		p.X45_splice	ENST00000357654	NM_007294.3	45																																																																																
RECQL4	9401	MSKCC	GRCh37	8	145737350	145737350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074238-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			544	40	305	0	ENST00000428558.2:c.3337G>A	p.Gly1113Arg	p.G1113R	ENST00000428558	NM_004260.3	1113	Ggg/Agg																																																																															
IRF4	3662	MSKCC	GRCh37	6	405088	405088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074238-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			333	55	196	0	ENST00000380956.4:c.1170G>T	p.Glu390Asp	p.E390D	ENST00000380956	NM_001195286.1	390	gaG/gaT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162621	47162621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074238-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	47	258	0	ENST00000409792.3:c.3505G>A	p.Asp1169Asn	p.D1169N	ENST00000409792	NM_014159.6	1169	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057520005		P-0074533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	231	291	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467821	50467821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	152	282	0	ENST00000331340.3:c.1056G>T	p.Lys352Asn	p.K352N	ENST00000331340	NM_006060.4	352	aaG/aaT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034420	47034420	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0074533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	97	82	0	ENST00000329236.7:c.274C>T	p.Gln92Ter	p.Q92*	ENST00000329236	NM_001204466.1	92	Cag/Tag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176700744	176700744	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs886041218		P-0074533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	38	238	0	ENST00000439151.2:c.5581C>T	p.Arg1861Ter	p.R1861*	ENST00000439151	NM_022455.4	1861	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821665	72821665	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781747615		P-0074533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	54	270	0	ENST00000268489.5:c.10510G>A	p.Val3504Ile	p.V3504I	ENST00000268489	NM_006885.3	3504	Gtc/Atc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629944	187629944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	151	341	0	ENST00000441802.2:c.1038G>T	p.Gln346His	p.Q346H	ENST00000441802	NM_005245.3	346	caG/caT																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120512146	120512146	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1158	74	326	0	ENST00000256646.2:c.1096G>C	p.Glu366Gln	p.E366Q	ENST00000256646	NM_024408.3	366	Gag/Cag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273101	55273101	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	146	300	0	ENST00000275493.2:c.3424G>T	p.Val1142Phe	p.V1142F	ENST00000275493	NM_005228.3	1142	Gtc/Ttc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602840	10602840	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	252	309	0	ENST00000171111.5:c.738C>A	p.Phe246Leu	p.F246L	ENST00000171111	NM_203500.1	246	ttC/ttA																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1956886	1956886	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0074533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	115	232	0	ENST00000382895.3:c.2339-2A>T		p.X780_splice	ENST00000382895	NM_133330.2	780																																																																																
KIT	3815	MSKCC	GRCh37	4	55565799	55565799	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0074533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	79	223	0	ENST00000288135.5:c.623T>G	p.Phe208Cys	p.F208C	ENST00000288135	NM_000222.2	208	tTc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000825-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			263	72	251	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115111980	115111981	+	missense_variant	Missense_Mutation	DNP	AG	AG	GT			P-0000825-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			609	146	388	0	ENST00000257566.3:c.1759_1760delinsAC	p.Leu587Thr	p.L587T	ENST00000257566	NM_016569.3	587	CTg/ACg																																																																															
ATR	545	MSKCC	GRCh37	3	142278092	142278092	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0000825-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			320	93	257	0	ENST00000350721.4:c.1732+1G>T		p.X578_splice	ENST00000350721	NM_001184.3	578																																																																																
AXIN1	8312	MSKCC	GRCh37	16	396668	396668	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000825-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			375	27	408	0	ENST00000262320.3:c.358G>C	p.Ala120Pro	p.A120P	ENST00000262320	NM_003502.3	120	Gcc/Ccc																																																																															
BLM	641	MSKCC	GRCh37	15	91334065	91334084	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTATAATGAGTAAGCTGGG	CTTATAATGAGTAAGCTGGG	-			P-0000825-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			367	187	292	0	ENST00000355112.3:c.3012_3019+12del		p.X1004_splice	ENST00000355112	NM_000057.2	1004																																																																																
NF2	4771	MSKCC	GRCh37	22	30067822	30067822	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587778554		P-0000825-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			387	133	308	0	ENST00000338641.4:c.1007G>A	p.Arg336Gln	p.R336Q	ENST00000338641	NM_000268.3	336	cGg/cAg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223376	53223376	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000825-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			402	135	328	0	ENST00000375401.3:c.3983del	p.Pro1328LeufsTer30	p.P1328Lfs*30	ENST00000375401	NM_004187.3	1328	cCt/ct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55232977	55232977	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000825-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			375	114	299	0	ENST00000275493.2:c.1727C>A	p.Pro576Gln	p.P576Q	ENST00000275493	NM_005228.3	576	cCa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0069106-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			242	82	440	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
FH	2271	MSKCC	GRCh37	1	241667534	241667534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069106-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			311	113	221	0	ENST00000366560.3:c.916G>A	p.Val306Ile	p.V306I	ENST00000366560	NM_000143.3	306	Gtc/Atc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188953	32188953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069106-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			300	52	487	0	ENST00000375023.3:c.601G>A	p.Asp201Asn	p.D201N	ENST00000375023	NM_004557.3	201	Gac/Aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0071741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			596	48	364	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0071741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			431	114	352	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374293	138374293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	10	296	0	ENST00000289153.2:c.3151G>A	p.Glu1051Lys	p.E1051K	ENST00000289153	NM_006219.2	1051	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0071741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			286	139	388	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916836	178916836	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			324	55	296	0	ENST00000263967.3:c.223C>G	p.Gln75Glu	p.Q75E	ENST00000263967	NM_006218.2	75	Caa/Gaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624275	89624275	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786204910		P-0071741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			160	80	175	0	ENST00000371953.3:c.49C>T	p.Gln17Ter	p.Q17*	ENST00000371953	NM_000314.4	17	Caa/Taa																																																																															
ERG	2078	MSKCC	GRCh37	21	39795407	39795407	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371043321		P-0071741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			356	47	390	0	ENST00000288319.7:c.313G>A	p.Gly105Ser	p.G105S	ENST00000288319	NM_182918.3	105	Ggc/Agc																																																																															
RB1	5925	MSKCC	GRCh37	13	49037878	49037878	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0071741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			96	42	216	0	ENST00000267163.4:c.2119del	p.Ser707ProfsTer8	p.S707Pfs*8	ENST00000267163	NM_000321.2	706	tgT/tg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249028	55249028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			536	134	360	1	ENST00000275493.2:c.2326C>A	p.Arg776Ser	p.R776S	ENST00000275493	NM_005228.3	776	Cgc/Agc																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47598965	47598965	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs371150449		P-0071741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	90	386	1	ENST00000395288.2:c.587C>T	p.Ser196Leu	p.S196L	ENST00000395288	NM_016506.5	196	tCg/tTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939540	71939540	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0071741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	129	394	0	ENST00000298229.2:c.395C>G	p.Ser132Ter	p.S132*	ENST00000298229	NM_001567.3	132	tCa/tGa																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169981191	169981191	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			353	39	228	0	ENST00000295797.4:c.338C>A	p.Pro113His	p.P113H	ENST00000295797	NM_002740.5	113	cCt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105977	27105987	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAGCTGCTG	CAGAGCTGCTG	-			P-0071741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			417	77	404	0	ENST00000324856.7:c.5589_5599del	p.Glu1864PhefsTer33	p.E1864Ffs*33	ENST00000324856	NM_006015.4	1863	aCAGAGCTGCTG/a																																																																															
TSHR	7253	MSKCC	GRCh37	14	81528515	81528515	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			230	88	249	0	ENST00000298171.2:c.194G>C	p.Arg65Thr	p.R65T	ENST00000298171	NM_000369.2	65	aGa/aCa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0074048-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			667	55	248	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
ERG	2078	MSKCC	GRCh37	21	39755678	39755678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074048-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			383	43	291	0	ENST00000288319.7:c.1087G>A	p.Asp363Asn	p.D363N	ENST00000288319	NM_182918.3	363	Gat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916948	178916950	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0074048-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			383	70	246	0	ENST00000263967.3:c.337_339del	p.Leu113del	p.L113del	ENST00000263967	NM_006218.2	112	aTCCtc/atc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189424	56189425	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0074048-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			542	134	263	0	ENST00000399503.3:c.4458dup	p.Arg1487SerfsTer36	p.R1487Sfs*36	ENST00000399503	NM_005921.1	1486	ctt/cTtt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900051	151900052	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0074048-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			426	46	216	0	ENST00000262189.6:c.4059_4060del	p.Asn1353LysfsTer3	p.N1353Kfs*3	ENST00000262189	NM_170606.2	1353	aaTAag/aaag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184155	56184159	+	frameshift_variant	Frame_Shift_Del	DEL	CACTC	CACTC	-			P-0074048-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			417	172	224	0	ENST00000399503.3:c.4362_4366del	p.His1454GlnfsTer8	p.H1454Qfs*8	ENST00000399503	NM_005921.1	1454	CACTCc/c																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371629	55371629	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0074048-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			448	37	251	0	ENST00000297316.4:c.319A>C	p.Lys107Gln	p.K107Q	ENST00000297316	NM_022454.3	107	Aag/Cag																																																																															
AR	367	MSKCC	GRCh37	X	66943527	66943527	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0074048-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			265	85	232	0	ENST00000374690.3:c.2608-1G>A		p.X870_splice	ENST00000374690	NM_000044.3	870																																																																																
DAXX	1616	MSKCC	GRCh37	6	33288947	33288947	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074548-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	149	153	0	ENST00000374542.5:c.605T>A	p.Ile202Asn	p.I202N	ENST00000374542	NM_001141970.1	202	aTc/aAc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577307	64577307	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074548-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	168	136	0	ENST00000337652.1:c.275del	p.Arg92ProfsTer27	p.R92Pfs*27	ENST00000337652	NM_130803.2	92	cGc/cc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2114357	2114357	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0074548-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	144	198	0	ENST00000219476.3:c.1528C>T	p.Gln510Ter	p.Q510*	ENST00000219476	NM_000548.3	510	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0074550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	42	284	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
HGF	3082	MSKCC	GRCh37	7	81331907	81331907	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	40	273	0	ENST00000222390.5:c.2177C>A	p.Pro726Gln	p.P726Q	ENST00000222390	NM_000601.4	726	cCa/cAa																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458216	12458216	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	55	370	0	ENST00000287820.6:c.833A>G	p.Tyr278Cys	p.Y278C	ENST00000287820	NM_015869.4	278	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0074571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	87	467	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
STK11	6794	MSKCC	GRCh37	19	1219321	1219321	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0074571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	74	377	1	ENST00000326873.7:c.375-2A>T		p.X125_splice	ENST00000326873	NM_000455.4	125																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0074571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	70	267	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376630	8376630	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	85	349	0	ENST00000356435.5:c.4483G>T	p.Val1495Phe	p.V1495F	ENST00000356435		1495	Gtt/Ttt																																																																															
PGR	5241	MSKCC	GRCh37	11	100998672	100998672	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	77	412	0	ENST00000325455.5:c.1130A>G	p.Tyr377Cys	p.Y377C	ENST00000325455	NM_001202474.3	377	tAt/tGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8375965	8375966	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0074571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	74	332	0	ENST00000356435.5:c.4631_4632delinsAT	p.Pro1544His	p.P1544H	ENST00000356435		1544	cCC/cAT																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2077668	2077668	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	95	405	0	ENST00000349721.2:c.2076G>T	p.Gln692His	p.Q692H	ENST00000349721	NM_003070.3	692	caG/caT																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846321	156846321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	87	380	0	ENST00000524377.1:c.1762G>A	p.Val588Ile	p.V588I	ENST00000524377	NM_002529.3	588	Gtc/Atc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180045791	180045791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	165	406	0	ENST00000261937.6:c.2980C>T	p.Arg994Trp	p.R994W	ENST00000261937	NM_182925.4	994	Cgg/Tgg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862880	9862880	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0074571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	83	402	0	ENST00000330684.3:c.2423T>G	p.Met808Arg	p.M808R	ENST00000330684	NM_001134407.1	808	aTg/aGg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285504	38285504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	104	440	1	ENST00000425967.3:c.649C>T	p.Pro217Ser	p.P217S	ENST00000425967	NM_001174067.1	217	Ccc/Tcc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95599771	95599771	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	95	349	0	ENST00000343455.3:c.25C>A	p.Leu9Ile	p.L9I	ENST00000343455	NM_177438.2	9	Ctc/Atc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0074574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	47	208	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68934361	68934361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	45	232	0	ENST00000288368.4:c.427C>T	p.Arg143Trp	p.R143W	ENST00000288368	NM_024870.2	143	Cgg/Tgg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0074582-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	85	366	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
ATM	472	MSKCC	GRCh37	11	108129749	108129749	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs780619951		P-0074582-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	183	338	0	ENST00000278616.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000278616	NM_000051.3	805	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108106499	108106499	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074582-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	275	296	0	ENST00000278616.4:c.434T>A	p.Leu145Gln	p.L145Q	ENST00000278616	NM_000051.3	145	cTa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0074586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	93	411	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974715	21974732	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCCCCCGCCTCCA	GCAGCGCCCCCGCCTCCA	-			P-0074586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	76	434	0	ENST00000304494.5:c.95_112del	p.Leu32_Leu37del	p.L32_L37del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCcc/ccc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0074586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	32	213	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51503214	51503214	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121434534		P-0074586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	26	341	0	ENST00000260433.2:c.1303C>T	p.Arg435Cys	p.R435C	ENST00000260433		435	Cgt/Tgt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851706	134851706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	58	387	0	ENST00000398015.3:c.1112C>A	p.Ser371Tyr	p.S371Y	ENST00000398015	NM_004441.4	371	tCc/tAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879543	151879544	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTT			P-0074171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	132	455	0	ENST00000262189.6:c.5401_5402insAAAA	p.Thr1801LysfsTer5	p.T1801Kfs*5	ENST00000262189	NM_170606.2	1801	aca/aAAAAca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578289	7578289	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0074480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	76	375	0	ENST00000269305.4:c.560del	p.Gly187ValfsTer60	p.G187Vfs*60	ENST00000269305	NM_001126112.2	187	gGt/gt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0074480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	50	202	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974798	21974799	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0074480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	76	382	0	ENST00000304494.5:c.28dup	p.Glu10GlyfsTer5	p.E10Gfs*5	ENST00000304494	NM_000077.4	10	gag/gGag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519942		P-0074514-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	26	225	0	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																															
RIT1	6016	MSKCC	GRCh37	1	155880489	155880489	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074514-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	40	282	0	ENST00000368323.3:c.64T>C	p.Tyr22His	p.Y22H	ENST00000368323	NM_006912.5	22	Tac/Cac																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	55	301	0	ENST00000346208.3:c.1003dup	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045776	47045776	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs538880998		P-0073031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	27	368	1	ENST00000329236.7:c.2423C>T	p.Thr808Met	p.T808M	ENST00000329236	NM_001204466.1	808	aCg/aTg																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46543199	46543199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	27	204	0	ENST00000262741.5:c.302C>T	p.Thr101Ile	p.T101I	ENST00000262741	NM_003629.3	101	aCt/aTt																																																																															
CIC	23152	MSKCC	GRCh37	19	42791194	42791194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	56	341	2	ENST00000575354.2:c.254C>T	p.Pro85Leu	p.P85L	ENST00000575354	NM_015125.3	85	cCa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073920-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			794	16	0	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913351		P-0073920-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			473	43	351	0	ENST00000288602.6:c.1397G>C	p.Gly466Ala	p.G466A	ENST00000288602	NM_004333.4	466	gGa/gCa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602763	10602763	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs774469695		P-0073920-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			709	56	630	0	ENST00000171111.5:c.815G>T	p.Arg272Leu	p.R272L	ENST00000171111	NM_203500.1	272	cGc/cTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258581	16258581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073920-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			701	59	651	0	ENST00000375759.3:c.5846G>A	p.Arg1949Gln	p.R1949Q	ENST00000375759	NM_015001.2	1949	cGg/cAg																																																																															
AR	367	MSKCC	GRCh37	X	66937351	66937351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073920-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			510	32	499	0	ENST00000374690.3:c.2205G>T	p.Met735Ile	p.M735I	ENST00000374690	NM_000044.3	735	atG/atT																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115906	8115906	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073920-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1016	24	0	0	ENST00000346208.3:c.1252A>T	p.Thr418Ser	p.T418S	ENST00000346208		418	Acg/Tcg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281885	39281885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073920-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			292	6	0	0	ENST00000402219.2:c.590G>T	p.Gly197Val	p.G197V	ENST00000402219	NM_005633.3	197	gGa/gTa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637273	47637273	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073920-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			539	43	391	0	ENST00000233146.2:c.407T>A	p.Phe136Tyr	p.F136Y	ENST00000233146	NM_000251.2	136	tTt/tAt																																																																															
REL	5966	MSKCC	GRCh37	2	61147584	61147584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073920-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			373	30	352	0	ENST00000295025.8:c.989C>T	p.Thr330Ile	p.T330I	ENST00000295025	NM_002908.2	330	aCc/aTc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94963991	94963991	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1356473777		P-0073920-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			379	20	346	0	ENST00000536441.1:c.34G>T	p.Ala12Ser	p.A12S	ENST00000536441	NM_144665.3	12	Gcc/Tcc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017803	31017803	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073920-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			515	39	434	0	ENST00000375687.4:c.665A>T	p.Glu222Val	p.E222V	ENST00000375687	NM_015338.5	222	gAg/gTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55269026	55269026	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073920-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			842	93	629	0	ENST00000275493.2:c.3092G>C	p.Arg1031Pro	p.R1031P	ENST00000275493	NM_005228.3	1031	cGg/cCg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894982	101894982	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073920-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			452	29	360	0	ENST00000374994.4:c.535G>T	p.Asp179Tyr	p.D179Y	ENST00000374994	NM_004612.2	179	Gac/Tac																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204737480	204737480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073920-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			497	30	423	0	ENST00000302823.3:c.617C>T	p.Pro206Leu	p.P206L	ENST00000302823	NM_005214.4	206	cCa/cTa																																																																															
GAB2	9846	MSKCC	GRCh37	11	77961344	77961344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073920-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			768	56	594	0	ENST00000361507.4:c.479C>T	p.Ala160Val	p.A160V	ENST00000361507	NM_080491.2	160	gCc/gTc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77051716	77051716	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755351376		P-0073920-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			699	43	530	0	ENST00000356341.3:c.1091del	p.Gly364AlafsTer42	p.G364Afs*42	ENST00000356341	NM_002576.4	364	gGc/gc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0073948-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			294	85	314	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0074402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	12	298	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157150547	157150547	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0074402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	82	532	0	ENST00000346085.5:c.1729C>T	p.Gln577Ter	p.Q577*	ENST00000346085	NM_020732.3	577	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431722	49431722	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			864	82	629	0	ENST00000301067.7:c.9417del	p.Lys3140ArgfsTer2	p.K3140Rfs*2	ENST00000301067	NM_003482.3	3139	ccC/cc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539417	187539417	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs747465065		P-0074402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	54	591	0	ENST00000441802.2:c.8323C>T	p.Gln2775Ter	p.Q2775*	ENST00000441802	NM_005245.3	2775	Cag/Tag																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14317397	14317397	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	33	308	0	ENST00000256196.4:c.113A>G	p.Tyr38Cys	p.Y38C	ENST00000256196		38	tAt/tGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129148	152129148	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1368974256		P-0074402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			709	54	596	0	ENST00000206249.3:c.101C>T	p.Pro34Leu	p.P34L	ENST00000206249	NM_000125.3	34	cCc/cTc																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733155	74733155	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			816	56	635	4	ENST00000359995.5:c.88C>G	p.Leu30Val	p.L30V	ENST00000359995	NM_001195427.1	30	Ctg/Gtg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28595736	28595736	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	72	540	0	ENST00000253063.3:c.133A>T	p.Ser45Cys	p.S45C	ENST00000253063	NM_031459.4	45	Agc/Tgc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956627	93956627	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0074402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	35	536	0	ENST00000369303.4:c.2609T>G	p.Leu870Trp	p.L870W	ENST00000369303	NM_004440.3	870	tTg/tGg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741900	17741900	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0074402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	33	475	0	ENST00000250003.3:c.571G>T	p.Glu191Ter	p.E191*	ENST00000250003	NM_002478.4	191	Gag/Tag																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21342368	21342368	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	49	543	0	ENST00000215739.8:c.470T>A	p.Phe157Tyr	p.F157Y	ENST00000215739	NM_006767.3	157	tTt/tAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578452	7578466	+	inframe_deletion	In_Frame_Del	DEL	TGGCGCGGACGCGGG	TGGCGCGGACGCGGG	-			P-0074402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	99	615	0	ENST00000269305.4:c.464_478del	p.Thr155_Ala159del	p.T155_A159del	ENST00000269305	NM_001126112.2	155	aCCCGCGTCCGCGCCAtg/atg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117687396	117687396	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	39	478	0	ENST00000368508.3:c.2655G>C	p.Gln885His	p.Q885H	ENST00000368508	NM_002944.2	885	caG/caC																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289578	33289578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	50	541	0	ENST00000374542.5:c.125C>T	p.Ser42Phe	p.S42F	ENST00000374542	NM_001141970.1	42	tCt/tTt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972818	25972818	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs764689410		P-0074402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	44	613	0	ENST00000435504.4:c.1607C>G	p.Pro536Arg	p.P536R	ENST00000435504		536	cCa/cGa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417338	139417338	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	92	618	0	ENST00000277541.6:c.706del	p.Thr236ArgfsTer41	p.T236Rfs*41	ENST00000277541	NM_017617.3	236	Acg/cg																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873397	136873397	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074402-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	80	549	0	ENST00000241393.3:c.101C>A	p.Ala34Asp	p.A34D	ENST00000241393	NM_003467.2	34	gCt/gAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0074405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			749	81	447	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913382		P-0073963-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			42	297	430	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0073963-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			45	341	312	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2191146	2191146	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073963-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			201	157	291	0	ENST00000398665.3:c.400G>T	p.Glu134Ter	p.E134*	ENST00000398665	NM_032482.2	134	Gag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32936737	32936737	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs879255465		P-0073963-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			150	130	404	0	ENST00000380152.3:c.7883T>C	p.Ile2628Thr	p.I2628T	ENST00000380152		2628	aTa/aCa																																																																															
KIT	3815	MSKCC	GRCh37	4	55592181	55592181	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073963-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			128	81	351	0	ENST00000288135.5:c.1505C>A	p.Ala502Asp	p.A502D	ENST00000288135	NM_000222.2	502	gCc/gAc																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158504	26158504	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073963-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			332	46	463	0	ENST00000289316.2:c.107A>G	p.Glu36Gly	p.E36G	ENST00000289316	NM_138720.2	36	gAg/gGg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56415032	56415032	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073963-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			151	119	324	0	ENST00000348428.3:c.2433A>G	p.Ile811Met	p.I811M	ENST00000348428	NM_006785.3	811	atA/atG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433303	49433303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073963-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			194	133	389	0	ENST00000301067.7:c.8144G>T	p.Gly2715Val	p.G2715V	ENST00000301067	NM_003482.3	2715	gGg/gTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965668	25965668	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073963-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			427	94	420	0	ENST00000435504.4:c.3538G>T	p.Asp1180Tyr	p.D1180Y	ENST00000435504		1180	Gac/Tac																																																																															
FLT1	2321	MSKCC	GRCh37	13	28908268	28908268	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0073963-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			152	71	338	0	ENST00000282397.4:c.2489-2A>T		p.X830_splice	ENST00000282397	NM_002019.4	830																																																																																
LATS2	26524	MSKCC	GRCh37	13	21557889	21557889	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073963-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			246	114	437	0	ENST00000382592.4:c.1956G>T	p.Glu652Asp	p.E652D	ENST00000382592	NM_014572.2	652	gaG/gaT																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965056	25965056	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073963-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			419	107	466	0	ENST00000435504.4:c.4150G>C	p.Val1384Leu	p.V1384L	ENST00000435504		1384	Gtt/Ctt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400303	139400303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073963-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			120	122	244	0	ENST00000277541.6:c.4045G>T	p.Ala1349Ser	p.A1349S	ENST00000277541	NM_017617.3	1349	Gct/Tct																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566714	212566714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073963-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			50	151	420	0	ENST00000342788.4:c.1467C>A	p.Asp489Glu	p.D489E	ENST00000342788	NM_005235.2	489	gaC/gaA																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918229	50918230	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0073963-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			181	78	359	1	ENST00000440232.2:c.2546_2547delinsAT	p.Arg849His	p.R849H	ENST00000440232	NM_002691.3	849	cGC/cAT																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670816	134670816	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073963-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			260	145	428	0	ENST00000398015.3:c.727G>C	p.Asp243His	p.D243H	ENST00000398015	NM_004441.4	243	Gat/Cat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486248	8486248	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073963-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			44	220	439	0	ENST00000356435.5:c.2569C>G	p.Arg857Gly	p.R857G	ENST00000356435		857	Cgt/Ggt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953136	81953136	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073963-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			245	148	455	0	ENST00000359376.3:c.2102A>G	p.His701Arg	p.H701R	ENST00000359376	NM_002661.3	701	cAc/cGc																																																																															
REST	5978	MSKCC	GRCh37	4	57777690	57777690	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0073963-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			156	76	333	0	ENST00000309042.7:c.886A>T	p.Arg296Ter	p.R296*	ENST00000309042	NM_005612.4	296	Aga/Tga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170374	11170719	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCAGGCAGCCCTCCAGTCGGGCCCATCCACTCAAGCCCCTGGTGTCTCTGCCCAGATCTATGAAGACTCCATCGTCTTGCAGTCGGTCTTCACCAGCGTGCGGCAGAAAATCGAGAAGGAGGATGACAGTGAAGGCGAGGAGAGTGAGGAGGAGGAAGAGGGCGAGGAGGAAGGCTCCGAATCCGAATGTGAGTCCCGGGGGGGTTCAGGACGCCGGGGTTCACGCTGGCCCGAGAGCCCCCAAGGCCCCAGCTTTTCACAGCCCTCCCGGCTCCCAGACGCCCCTTGCTGTGGGGGTGCTGCATTCCCAGAGCTCAAGGCTGTCTTTCCCTCCCGGTCCCCTCCA	GCAGGCAGCCCTCCAGTCGGGCCCATCCACTCAAGCCCCTGGTGTCTCTGCCCAGATCTATGAAGACTCCATCGTCTTGCAGTCGGTCTTCACCAGCGTGCGGCAGAAAATCGAGAAGGAGGATGACAGTGAAGGCGAGGAGAGTGAGGAGGAGGAAGAGGGCGAGGAGGAAGGCTCCGAATCCGAATGTGAGTCCCGGGGGGGTTCAGGACGCCGGGGTTCACGCTGGCCCGAGAGCCCCCAAGGCCCCAGCTTTTCACAGCCCTCCCGGCTCCCAGACGCCCCTTGCTGTGGGGGTGCTGCATTCCCAGAGCTCAAGGCTGTCTTTCCCTCCCGGTCCCCTCCA	-			P-0073963-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			124	75	219	0	ENST00000344626.4:c.4636-53_4769del		p.X1546_splice	ENST00000344626	NM_003072.3	1546																																																																																
RAD21	5885	MSKCC	GRCh37	8	117875465	117875465	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073963-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			200	120	431	0	ENST00000297338.2:c.178T>G	p.Leu60Val	p.L60V	ENST00000297338	NM_006265.2	60	Tta/Gta																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934879	9934879	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073963-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			142	96	385	0	ENST00000330684.3:c.1411G>C	p.Val471Leu	p.V471L	ENST00000330684	NM_001134407.1	471	Gtg/Ctg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2110413	2110413	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073963-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			52	273	399	0	ENST00000349721.2:c.3452A>T	p.His1151Leu	p.H1151L	ENST00000349721	NM_003070.3	1151	cAt/cTt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225342996	225342996	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073963-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			78	132	337	0	ENST00000264414.4:c.2096G>C	p.Arg699Thr	p.R699T	ENST00000264414	NM_003590.4	699	aGa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			53	141	374	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																															
CIC	23152	MSKCC	GRCh37	19	42791716	42791716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			157	257	461	0	ENST00000575354.2:c.602G>A	p.Arg201Gln	p.R201Q	ENST00000575354	NM_015125.3	201	cGg/cAg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112608	115112608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			116	64	419	0	ENST00000257566.3:c.1132G>A	p.Glu378Lys	p.E378K	ENST00000257566	NM_016569.3	378	Gag/Aag																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33430540	33430540	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			164	86	460	0	ENST00000335858.7:c.264del	p.Lys89ArgfsTer26	p.K89Rfs*26	ENST00000335858	NM_133629.2	88	gtG/gt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106522652	106522652	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0074067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			85	35	297	0	ENST00000359195.3:c.2629G>T	p.Gly877Ter	p.G877*	ENST00000359195	NM_002649.2	877	Gga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579419	7579420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0074455-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	27	461	0	ENST00000269305.4:c.267dup	p.Ser90LeufsTer59	p.S90Lfs*59	ENST00000269305	NM_001126112.2	89	-/C																																																																															
TP53	7157	MSKCC	GRCh37	17	7579365	7579365	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782461		P-0074455-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	25	410	0	ENST00000269305.4:c.322G>A	p.Gly108Ser	p.G108S	ENST00000269305	NM_001126112.2	108	Ggt/Agt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			561	158	420	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044850	47044850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			574	143	653	0	ENST00000329236.7:c.1942C>T	p.Arg648Ter	p.R648*	ENST00000329236	NM_001204466.1	648	Cga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112323	115112324	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-	rs1381943852		P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	173	455	0	ENST00000257566.3:c.1416_1417del	p.Leu473ProfsTer218	p.L473Pfs*218	ENST00000257566	NM_016569.3	472	gcGCtc/gctc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21968242	21968242	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	215	428	0	ENST00000304494.5:c.458-1G>T		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																																
AMER1	139285	MSKCC	GRCh37	X	63411182	63411182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			554	134	469	0	ENST00000330258.3:c.1985C>T	p.Ser662Leu	p.S662L	ENST00000330258	NM_152424.3	662	tCa/tTa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410006	63410006	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			570	199	490	0	ENST00000330258.3:c.3161C>A	p.Pro1054His	p.P1054H	ENST00000330258	NM_152424.3	1054	cCt/cAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713415	40713415	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs761334315		P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			742	193	564	0	ENST00000373198.4:c.4100C>A	p.Pro1367His	p.P1367H	ENST00000373198	NM_133170.3	1367	cCc/cAc																																																																															
IRF4	3662	MSKCC	GRCh37	6	401737	401737	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			703	126	521	0	ENST00000380956.4:c.1059C>A	p.Asp353Glu	p.D353E	ENST00000380956	NM_001195286.1	353	gaC/gaA																																																																															
MED12	9968	MSKCC	GRCh37	X	70349953	70349953	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1060	91	470	0	ENST00000374080.3:c.3936G>C	p.Leu1312Phe	p.L1312F	ENST00000374080		1312	ttG/ttC																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023748	27023748	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			621	113	512	0	ENST00000324856.7:c.854G>T	p.Gly285Val	p.G285V	ENST00000324856	NM_006015.4	285	gGa/gTa																																																																															
MPL	4352	MSKCC	GRCh37	1	43803591	43803591	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			585	237	576	0	ENST00000372470.3:c.72C>A	p.Ser24Arg	p.S24R	ENST00000372470	NM_005373.2	24	agC/agA																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120457942	120457942	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			510	209	518	0	ENST00000256646.2:c.7403A>T	p.Gln2468Leu	p.Q2468L	ENST00000256646	NM_024408.3	2468	cAg/cTg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44911002	44911002	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			522	111	468	0	ENST00000377967.4:c.703G>C	p.Glu235Gln	p.E235Q	ENST00000377967	NM_021140.2	235	Gag/Cag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32185851	32185851	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			467	99	359	0	ENST00000375023.3:c.1545C>A	p.Asn515Lys	p.N515K	ENST00000375023	NM_004557.3	515	aaC/aaA																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680680	88680680	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			354	157	349	0	ENST00000360948.2:c.577G>C	p.Asp193His	p.D193H	ENST00000360948	NM_001012338.2	193	Gat/Cat																																																																															
AXL	558	MSKCC	GRCh37	19	41754417	41754417	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	339	395	0	ENST00000301178.4:c.1538-2A>T		p.X513_splice	ENST00000301178	NM_021913.4	513																																																																																
PGR	5241	MSKCC	GRCh37	11	100999299	100999299	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			641	189	541	0	ENST00000325455.5:c.503C>A	p.Ser168Tyr	p.S168Y	ENST00000325455	NM_001202474.3	168	tCc/tAc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223514	2223514	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			514	158	494	0	ENST00000326181.6:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000326181	NM_032271.2	349	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428385	49428385	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			643	279	484	0	ENST00000301067.7:c.10420G>T	p.Val3474Leu	p.V3474L	ENST00000301067	NM_003482.3	3474	Gtg/Ttg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56490539	56490540	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			581	179	426	0	ENST00000267101.3:c.2183_2184delinsTT	p.Trp728Phe	p.W728F	ENST00000267101	NM_001982.3	728	tGG/tTT																																																																															
TET1	80312	MSKCC	GRCh37	10	70406351	70406351	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			471	98	369	0	ENST00000373644.4:c.3865A>T	p.Thr1289Ser	p.T1289S	ENST00000373644	NM_030625.2	1289	Acg/Tcg																																																																															
CD276	80381	MSKCC	GRCh37	15	74000815	74000815	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			603	91	465	0	ENST00000318443.5:c.1504+1G>C		p.X502_splice	ENST00000318443	NM_001024736.1	502																																																																																
USP8	9101	MSKCC	GRCh37	15	50741619	50741619	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			311	50	225	0	ENST00000307179.4:c.272G>T	p.Gly91Val	p.G91V	ENST00000307179		91	gGa/gTa																																																																															
STAT3	6774	MSKCC	GRCh37	17	40469229	40469229	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			529	81	353	0	ENST00000264657.5:c.2115C>G	p.Tyr705Ter	p.Y705*	ENST00000264657	NM_139276.2	705	taC/taG																																																																															
USP8	9101	MSKCC	GRCh37	15	50782459	50782459	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			324	83	273	0	ENST00000307179.4:c.1972-1G>T		p.X658_splice	ENST00000307179		658																																																																																
FOXL2	668	MSKCC	GRCh37	3	138664694	138664694	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			438	159	384	0	ENST00000330315.3:c.871C>G	p.His291Asp	p.H291D	ENST00000330315	NM_023067.3	291	Cac/Gac																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836609	89836609	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			658	94	453	0	ENST00000389301.3:c.2281G>T	p.Val761Leu	p.V761L	ENST00000389301	NM_000135.2	761	Gtg/Ttg																																																																															
GAB1	2549	MSKCC	GRCh37	4	144390202	144390202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			378	212	368	0	ENST00000262994.4:c.1945G>A	p.Gly649Ser	p.G649S	ENST00000262994	NM_002039.3	649	Ggc/Agc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151855989	151855989	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			608	147	433	0	ENST00000262189.6:c.11629G>T	p.Ala3877Ser	p.A3877S	ENST00000262189	NM_170606.2	3877	Gct/Tct																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98242357	98242357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			411	84	374	0	ENST00000331920.6:c.961C>T	p.Leu321Phe	p.L321F	ENST00000331920	NM_000264.3	321	Ctt/Ttt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178714	32178714	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			465	70	343	0	ENST00000375023.3:c.2681-1G>T		p.X894_splice	ENST00000375023	NM_004557.3	894																																																																																
APC	324	MSKCC	GRCh37	5	112174001	112174001	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			339	219	423	0	ENST00000257430.4:c.2710A>T	p.Arg904Ter	p.R904*	ENST00000257430	NM_000038.5	904	Aga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412665	63412665	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs747418392		P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			480	149	435	0	ENST00000330258.3:c.502G>T	p.Gly168Cys	p.G168C	ENST00000330258	NM_152424.3	168	Ggc/Tgc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022483	12022483	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			643	257	589	0	ENST00000396373.4:c.589G>C	p.Glu197Gln	p.E197Q	ENST00000396373	NM_001987.4	197	Gag/Cag																																																																															
USP8	9101	MSKCC	GRCh37	15	50782479	50782479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			424	85	352	0	ENST00000307179.4:c.1991G>C	p.Gly664Ala	p.G664A	ENST00000307179		664	gGa/gCa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437623	110437623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			514	92	457	0	ENST00000375856.3:c.778G>T	p.Gly260Cys	p.G260C	ENST00000375856	NM_003749.2	260	Ggc/Tgc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144147	11144147	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	222	402	0	ENST00000344626.4:c.3728G>T	p.Arg1243Leu	p.R1243L	ENST00000344626	NM_003072.3	1243	cGg/cTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29684049	29684049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			536	86	350	0	ENST00000358273.4:c.7810C>T	p.Leu2604Phe	p.L2604F	ENST00000358273	NM_001042492.2	2604	Ctc/Ttc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472425	88472425	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0074349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	188	456	0	ENST00000360948.2:c.2130C>A	p.Tyr710Ter	p.Y710*	ENST00000360948	NM_001012338.2	710	taC/taA																																																																															
CBL	867	MSKCC	GRCh37	11	119148992	119149028	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTACATCCTGGCAGGTACGGATCTAAACAGCGACT	TCTTACATCCTGGCAGGTACGGATCTAAACAGCGACT	-			P-0074349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	278	421	0	ENST00000264033.4:c.1213_1227+22del		p.X405_splice	ENST00000264033	NM_005188.3	405																																																																																
PMS1	5378	MSKCC	GRCh37	2	190719055	190719055	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	138	360	0	ENST00000441310.2:c.1057G>T	p.Val353Phe	p.V353F	ENST00000441310	NM_000534.4	353	Gtt/Ttt																																																																															
STK11	6794	MSKCC	GRCh37	19	1219191	1219384	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGGTGGGCCCTGGTCCCGAGGAGGGGCAAGGTGGGTGCAGAGGGTCCCTCCAGAGCCCCTTTTCTGGCCCCCGTGCTCCCTGGGCCTGTGAGTGGGGCCGCCCCCTGAGCTGTGTGTCCTTAGCGCCCCACGTATATGGTGATGGAGTACTGCGTGTGTGGCATGCAGGAAATGCTGGACAGCGTGCCGGAGA	AGGGTGGGCCCTGGTCCCGAGGAGGGGCAAGGTGGGTGCAGAGGGTCCCTCCAGAGCCCCTTTTCTGGCCCCCGTGCTCCCTGGGCCTGTGAGTGGGGCCGCCCCCTGAGCTGTGTGTCCTTAGCGCCCCACGTATATGGTGATGGAGTACTGCGTGTGTGGCATGCAGGAAATGCTGGACAGCGTGCCGGAGA	-			P-0074349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	63	163	0	ENST00000326873.7:c.375-130_438del		p.X125_splice	ENST00000326873	NM_000455.4	125																																																																																
IRS1	3667	MSKCC	GRCh37	2	227661111	227661111	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0074351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			767	180	641	0	ENST00000305123.5:c.2344G>T	p.Glu782Ter	p.E782*	ENST00000305123	NM_005544.2	782	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0074351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	43	339	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411085	63411085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	117	562	0	ENST00000330258.3:c.2082C>A	p.Asp694Glu	p.D694E	ENST00000330258	NM_152424.3	694	gaC/gaA																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923198	39923198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	70	390	0	ENST00000378444.4:c.3510G>T	p.Trp1170Cys	p.W1170C	ENST00000378444	NM_001123385.1	1170	tgG/tgT																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31368172	31368172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			724	133	570	0	ENST00000328111.2:c.43G>T	p.Gly15Cys	p.G15C	ENST00000328111	NM_006892.3	15	Ggc/Tgc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008314	29008314	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0074351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	88	468	0	ENST00000282397.4:c.557G>A	p.Trp186Ter	p.W186*	ENST00000282397	NM_002019.4	186	tGg/tAg																																																																															
MGA	23269	MSKCC	GRCh37	15	42035307	42035307	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	229	485	0	ENST00000219905.7:c.5149del	p.Leu1717TrpfsTer17	p.L1717Wfs*17	ENST00000219905	NM_001164273.1	1717	Ctg/tg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221254	5221254	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	94	527	0	ENST00000357368.4:c.3212A>G	p.Asn1071Ser	p.N1071S	ENST00000357368	NM_002850.3	1071	aAt/aGt																																																																															
ATRX	546	MSKCC	GRCh37	X	76907653	76907653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	78	429	0	ENST00000373344.5:c.4508G>T	p.Arg1503Ile	p.R1503I	ENST00000373344	NM_000489.3	1503	aGa/aTa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129156	152129156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			177	36	513	0	ENST00000206249.3:c.109C>T	p.Arg37Trp	p.R37W	ENST00000206249	NM_000125.3	37	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			79	34	296	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578379	7578380	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0043580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			223	51	564	0	ENST00000269305.4:c.550_551del	p.Asp184Ter	p.D184*	ENST00000269305	NM_001126112.2	184	GAt/t																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0074046-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			346	104	450	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419986	41419986	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372989163		P-0074046-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			420	63	534	0	ENST00000373198.4:c.335G>A	p.Arg112His	p.R112H	ENST00000373198	NM_133170.3	112	cGt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420585	49420585	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0074046-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			505	99	606	0	ENST00000301067.7:c.15164A>C	p.Asp5055Ala	p.D5055A	ENST00000301067	NM_003482.3	5055	gAc/gCc																																																																															
MTAP	4507	MSKCC	GRCh37	9	21815450	21815450	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074046-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			133	25	227	0	ENST00000380172.4:c.52A>G	p.Thr18Ala	p.T18A	ENST00000380172	NM_002451.3	18	Aca/Gca																																																																															
REST	5978	MSKCC	GRCh37	4	57776820	57776820	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074046-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			482	33	451	0	ENST00000309042.7:c.16A>T	p.Met6Leu	p.M6L	ENST00000309042	NM_005612.4	6	Atg/Ttg																																																																															
HGF	3082	MSKCC	GRCh37	7	81381516	81381516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074059-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			200	47	305	0	ENST00000222390.5:c.545G>A	p.Gly182Glu	p.G182E	ENST00000222390	NM_000601.4	182	gGg/gAg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740544	58740544	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074059-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			207	83	368	0	ENST00000305921.3:c.1451del	p.Leu484Ter	p.L484*	ENST00000305921	NM_003620.3	483	acT/ac																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49280973	49280973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074059-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			115	14	364	0	ENST00000282018.3:c.20C>T	p.Ser7Phe	p.S7F	ENST00000282018	NM_020377.2	7	tCc/tTc																																																																															
POT1	25913	MSKCC	GRCh37	7	124503533	124503533	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074059-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	24	338	0	ENST00000357628.3:c.417G>T	p.Trp139Cys	p.W139C	ENST00000357628	NM_015450.2	139	tgG/tgT																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891193	101891193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074059-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	44	304	0	ENST00000374994.4:c.154G>T	p.Gly52Trp	p.G52W	ENST00000374994	NM_004612.2	52	Ggg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0074059-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			136	60	241	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31511148	31511148	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074059-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			377	43	273	0	ENST00000344624.3:c.1426G>T	p.Asp476Tyr	p.D476Y	ENST00000344624		476	Gat/Tat																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675128	40675128	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074059-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			282	60	401	0	ENST00000249776.8:c.92A>G	p.Tyr31Cys	p.Y31C	ENST00000249776	NM_033286.3	31	tAc/tGc																																																																															
USP8	9101	MSKCC	GRCh37	15	50782514	50782514	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074059-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			224	39	325	0	ENST00000307179.4:c.2026G>T	p.Val676Phe	p.V676F	ENST00000307179		676	Gtt/Ttt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993299	72993299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074059-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			228	58	414	0	ENST00000268489.5:c.746G>T	p.Gly249Val	p.G249V	ENST00000268489	NM_006885.3	249	gGt/gTt																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799692	72799692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074059-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			225	65	386	0	ENST00000325599.8:c.1477G>T	p.Gly493Cys	p.G493C	ENST00000325599	NM_018130.2	493	Ggt/Tgt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460544	8460544	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074059-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			188	50	369	0	ENST00000356435.5:c.3742G>T	p.Asp1248Tyr	p.D1248Y	ENST00000356435		1248	Gac/Tac																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754616	57754616	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074059-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			113	21	318	0	ENST00000274289.3:c.431A>T	p.Gln144Leu	p.Q144L	ENST00000274289	NM_006622.3	144	cAg/cTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880932	134880932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074059-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			220	82	332	0	ENST00000398015.3:c.1495G>T	p.Gly499Cys	p.G499C	ENST00000398015	NM_004441.4	499	Ggc/Tgc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56171102	56171102	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074059-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			245	25	300	0	ENST00000399503.3:c.1930G>C	p.Ala644Pro	p.A644P	ENST00000399503	NM_005921.1	644	Gct/Cct																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125497656	125497656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074059-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			91	12	296	0	ENST00000428830.2:c.220A>G	p.Arg74Gly	p.R74G	ENST00000428830	NM_001114121.2	74	Agg/Ggg																																																																															
FYN	2534	MSKCC	GRCh37	6	112015618	112015618	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074059-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			264	39	408	1	ENST00000368678.4:c.1224G>C	p.Leu408Phe	p.L408F	ENST00000368678		408	ttG/ttC																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643736	38643736	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074059-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			209	43	398	0	ENST00000299084.4:c.1206G>T	p.Leu402Phe	p.L402F	ENST00000299084	NM_152594.2	402	ttG/ttT																																																																															
TERT	7015	MSKCC	GRCh37	5	1293740	1293740	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074059-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			516	45	463	0	ENST00000310581.5:c.1261C>G	p.Pro421Ala	p.P421A	ENST00000310581	NM_198253.2	421	Cca/Gca																																																																															
NF1	4763	MSKCC	GRCh37	17	29586148	29586148	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0074059-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			69	10	222	0	ENST00000358273.4:c.4430+1G>T		p.X1477_splice	ENST00000358273	NM_001042492.2	1477																																																																																
XRCC2	7516	MSKCC	GRCh37	7	152346115	152346115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	33	361	0	ENST00000359321.1:c.455C>T	p.Ser152Leu	p.S152L	ENST00000359321	NM_005431.1	152	tCa/tTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730925	40730925	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	70	366	0	ENST00000373198.4:c.3610G>T	p.Val1204Leu	p.V1204L	ENST00000373198	NM_133170.3	1204	Gtg/Ttg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085851	16085851	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	27	374	0	ENST00000281043.3:c.1027G>T	p.Asp343Tyr	p.D343Y	ENST00000281043	NM_005378.4	343	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0074220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	96	207	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610362	10610363	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0074220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	99	430	1	ENST00000171111.5:c.347_348delinsCT	p.Arg116Pro	p.R116P	ENST00000171111	NM_203500.1	116	cGG/cCT																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103528194	103528194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	29	309	0	ENST00000355739.4:c.3502G>T	p.Val1168Leu	p.V1168L	ENST00000355739	NM_000123.3	1168	Gtg/Ttg																																																																															
BARD1	580	MSKCC	GRCh37	2	215645849	215645849	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	55	336	0	ENST00000260947.4:c.749C>G	p.Ser250Cys	p.S250C	ENST00000260947	NM_000465.2	250	tCc/tGc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039640	47039640	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	29	345	0	ENST00000329236.7:c.858G>T	p.Gln286His	p.Q286H	ENST00000329236	NM_001204466.1	286	caG/caT																																																																															
RAF1	5894	MSKCC	GRCh37	3	12632451	12632451	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	40	422	0	ENST00000251849.4:c.1216C>G	p.Leu406Val	p.L406V	ENST00000251849	NM_002880.3	406	Ctg/Gtg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518089	176518089	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	79	391	0	ENST00000292408.4:c.587G>T	p.Arg196Leu	p.R196L	ENST00000292408	NM_213647.1	196	cGc/cTc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28895604	28895604	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	23	282	0	ENST00000282397.4:c.3170G>T	p.Gly1057Val	p.G1057V	ENST00000282397	NM_002019.4	1057	gGa/gTa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117741	115117742	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0074220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	42	314	0	ENST00000257566.3:c.693_694delinsAT	p.Gly232Trp	p.G232W	ENST00000257566	NM_016569.3	231	caGGgg/caATgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432433	49432433	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	99	439	0	ENST00000301067.7:c.8706G>T	p.Gln2902His	p.Q2902H	ENST00000301067	NM_003482.3	2902	caG/caT																																																																															
LATS2	26524	MSKCC	GRCh37	13	21553938	21553938	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0074220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	17	223	0	ENST00000382592.4:c.2666-2A>T		p.X889_splice	ENST00000382592	NM_014572.2	889																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0074225-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	38	448	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519989		P-0074225-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	10	360	0	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0074227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	54	318	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039407	47039407	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	61	443	0	ENST00000329236.7:c.799G>T	p.Gly267Cys	p.G267C	ENST00000329236	NM_001204466.1	267	Ggc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42003138	42003138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	32	453	0	ENST00000219905.7:c.2675C>T	p.Pro892Leu	p.P892L	ENST00000219905	NM_001164273.1	892	cCc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0074227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	33	283	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39617702	39617702	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	55	343	0	ENST00000262039.4:c.1886G>T	p.Gly629Val	p.G629V	ENST00000262039	NM_002647.2	629	gGc/gTc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448279	56448279	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	65	493	0	ENST00000407977.2:c.368C>G	p.Ala123Gly	p.A123G	ENST00000407977		123	gCt/gGt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028749	47028749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	47	443	0	ENST00000329236.7:c.53C>A	p.Ala18Asp	p.A18D	ENST00000329236	NM_001204466.1	18	gCc/gAc																																																																															
RAD52	5893	MSKCC	GRCh37	12	1034693	1034693	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0074227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	49	346	0	ENST00000358495.3:c.468-2A>G		p.X156_splice	ENST00000358495	NM_134424.2	156																																																																																
NCOA3	8202	MSKCC	GRCh37	20	46277815	46277815	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	40	409	0	ENST00000371998.3:c.3613G>T	p.Val1205Leu	p.V1205L	ENST00000371998		1205	Gtg/Ttg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151893090	151893090	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	31	291	0	ENST00000262189.6:c.4280C>A	p.Ala1427Asp	p.A1427D	ENST00000262189	NM_170606.2	1427	gCt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0071378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	18	683	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436002	56436002	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1366537134		P-0071378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	34	774	0	ENST00000407977.2:c.1135C>T	p.Gln379Ter	p.Q379*	ENST00000407977		379	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	78	388	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0073744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	25	302	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974696	21974697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0073744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	20	424	0	ENST00000304494.5:c.130dup	p.Tyr44LeufsTer76	p.Y44Lfs*76	ENST00000304494	NM_000077.4	44	tac/tTac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578200	7578201	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CACA			P-0073744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	32	491	0	ENST00000269305.4:c.645_648dup	p.Val217CysfsTer6	p.V217Cfs*6	ENST00000269305	NM_001126112.2	216	-/TGTG																																																																															
REL	5966	MSKCC	GRCh37	2	61148967	61148968	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0073744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			766	41	415	0	ENST00000295025.8:c.1157_1158delinsTT	p.Ser386Phe	p.S386F	ENST00000295025	NM_002908.2	386	tCC/tTT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0074055-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			237	92	233	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074055-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			422	242	421	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231700	66231700	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074055-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			178	57	292	0	ENST00000273854.3:c.2000C>A	p.Ala667Asp	p.A667D	ENST00000273854	NM_004439.5	667	gCt/gAt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867454	35867454	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0074055-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			358	68	303	0	ENST00000303115.3:c.268G>T	p.Glu90Ter	p.E90*	ENST00000303115	NM_002185.3	90	Gag/Tag																																																																															
ARAF	369	MSKCC	GRCh37	X	47426127	47426127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074055-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			554	112	428	0	ENST00000377045.4:c.647C>T	p.Pro216Leu	p.P216L	ENST00000377045	NM_001654.4	216	cCc/cTc																																																																															
AR	367	MSKCC	GRCh37	X	66937342	66937342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074055-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			365	164	320	0	ENST00000374690.3:c.2196C>A	p.Asp732Glu	p.D732E	ENST00000374690	NM_000044.3	732	gaC/gaA																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115282417	115282432	+	frameshift_variant	Frame_Shift_Del	DEL	TTTTCAATAACCCCAG	TTTTCAATAACCCCAG	-			P-0074055-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			289	122	278	0	ENST00000438362.2:c.218_233del	p.Thr73AsnfsTer3	p.T73Nfs*3	ENST00000438362	NM_001242891.1	73	aCTGGGGTTATTGAAAAa/aa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285702	46285702	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0074055-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			429	31	372	0	ENST00000334344.6:c.5061+1G>T		p.X1687_splice	ENST00000334344	NM_152641.2	1687																																																																																
PRKD1	5587	MSKCC	GRCh37	14	30103634	30103634	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074055-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			420	39	288	0	ENST00000331968.5:c.1304A>G	p.Lys435Arg	p.K435R	ENST00000331968	NM_002742.2	435	aAg/aGg																																																																															
MGA	23269	MSKCC	GRCh37	15	41961891	41961891	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074055-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			391	72	357	0	ENST00000219905.7:c.802del	p.Gln268ArgfsTer61	p.Q268Rfs*61	ENST00000219905	NM_001164273.1	267	Ccc/cc																																																																															
MGA	23269	MSKCC	GRCh37	15	42002969	42002969	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0074055-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			262	76	311	0	ENST00000219905.7:c.2506A>T	p.Lys836Ter	p.K836*	ENST00000219905	NM_001164273.1	836	Aag/Tag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43714254	43714254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074055-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			443	94	449	0	ENST00000382044.4:c.3899C>T	p.Ser1300Phe	p.S1300F	ENST00000382044	NM_001141980.1	1300	tCc/tTc																																																																															
CDH1	999	MSKCC	GRCh37	16	68842420	68842420	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074055-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			295	155	362	0	ENST00000261769.5:c.481A>G	p.Ile161Val	p.I161V	ENST00000261769	NM_004360.3	161	Atc/Gtc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63526118	63526138	+	inframe_deletion	In_Frame_Del	DEL	CAGAATCCGGCCTTCATACAT	CAGAATCCGGCCTTCATACAT	-			P-0074055-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			736	211	426	0	ENST00000307078.5:c.2488_2508del	p.Met830_Leu836del	p.M830_L836del	ENST00000307078	NM_004655.3	830	ATGTATGAAGGCCGGATTCTG/-																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097098	11097098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074055-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			612	210	463	0	ENST00000344626.4:c.589C>A	p.Pro197Thr	p.P197T	ENST00000344626	NM_003072.3	197	Ccc/Acc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313491	30313491	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074055-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			524	135	375	0	ENST00000262643.3:c.1091G>T	p.Arg364Ile	p.R364I	ENST00000262643	NM_001238.2	364	aGa/aTa																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250437	110250437	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074055-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			559	159	406	0	ENST00000374672.4:c.238G>T	p.Gly80Cys	p.G80C	ENST00000374672	NM_004235.4	80	Ggt/Tgt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110251222	110251222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074055-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			294	386	387	0	ENST00000374672.4:c.115G>T	p.Ala39Ser	p.A39S	ENST00000374672	NM_004235.4	39	Gcc/Tcc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971015	21971015	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074055-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			411	248	454	0	ENST00000304494.5:c.343del	p.Val115TrpfsTer31	p.V115Wfs*31	ENST00000304494	NM_000077.4	115	Gtg/tg																																																																															
BTK	695	MSKCC	GRCh37	X	100611060	100611060	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074055-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			632	90	342	0	ENST00000308731.7:c.1546C>A	p.Gln516Lys	p.Q516K	ENST00000308731	NM_000061.2	516	Cag/Aag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045514	47045515	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0074055-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			580	114	456	0	ENST00000329236.7:c.2249_2250del	p.Pro750ArgfsTer31	p.P750Rfs*31	ENST00000329236	NM_001204466.1	749	atCCcc/atcc																																																																															
MED12	9968	MSKCC	GRCh37	X	70344225	70344225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074055-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			491	57	324	0	ENST00000374080.3:c.1961G>A	p.Ser654Asn	p.S654N	ENST00000374080		654	aGc/aAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70344824	70344824	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0074055-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			436	170	361	0	ENST00000374080.3:c.2056-2A>T		p.X686_splice	ENST00000374080		686																																																																																
GATA3	2625	MSKCC	GRCh37	10	8115888	8115889	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0074287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	123	489	0	ENST00000346208.3:c.1236dup	p.Ser413GlnfsTer94	p.S413Qfs*94	ENST00000346208		412	tcc/tCcc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3828070	3828070	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	35	409	0	ENST00000262367.5:c.2055A>T	p.Leu685Phe	p.L685F	ENST00000262367	NM_004380.2	685	ttA/ttT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0074287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	9	201	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	29	476	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262051	16262051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	48	450	0	ENST00000375759.3:c.9316C>T	p.Pro3106Ser	p.P3106S	ENST00000375759	NM_015001.2	3106	Ccc/Tcc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713372	40713372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	85	513	0	ENST00000373198.4:c.4143G>T	p.Lys1381Asn	p.K1381N	ENST00000373198	NM_133170.3	1381	aaG/aaT																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176516659	176516659	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0074287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	37	322	0	ENST00000292408.4:c.56T>G	p.Val19Gly	p.V19G	ENST00000292408	NM_213647.1	19	gTc/gGc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609461	81609461	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0074291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	44	308	0	ENST00000298171.2:c.1059C>A	p.Tyr353Ter	p.Y353*	ENST00000298171	NM_000369.2	353	taC/taA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0074291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	93	235	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55151602	55151602	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	91	231	0	ENST00000257290.5:c.2388G>C	p.Leu796Phe	p.L796F	ENST00000257290	NM_006206.4	796	ttG/ttC																																																																															
RECQL	5965	MSKCC	GRCh37	12	21643206	21643206	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	110	276	0	ENST00000421138.2:c.321G>T	p.Lys107Asn	p.K107N	ENST00000421138		107	aaG/aaT																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246581	46246581	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	127	296	0	ENST00000334344.6:c.4676del	p.Gly1559GlufsTer7	p.G1559Efs*7	ENST00000334344	NM_152641.2	1559	Gga/ga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630329	187630329	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	164	332	0	ENST00000441802.2:c.653A>T	p.Tyr218Phe	p.Y218F	ENST00000441802	NM_005245.3	218	tAt/tTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447904	49447904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	147	355	0	ENST00000301067.7:c.530G>T	p.Arg177Met	p.R177M	ENST00000301067	NM_003482.3	177	aGg/aTg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552816	106552816	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	145	355	0	ENST00000369096.4:c.781T>A	p.Ser261Thr	p.S261T	ENST00000369096	NM_001198.3	261	Tcc/Acc																																																																															
BTK	695	MSKCC	GRCh37	X	100613333	100613333	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	62	340	0	ENST00000308731.7:c.1067C>A	p.Pro356His	p.P356H	ENST00000308731	NM_000061.2	356	cCt/cAt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141561457	141561458	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0074291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	118	393	0	ENST00000220592.5:c.1347_1348delinsTT	p.Lys449_Val450delinsAsnLeu	p.K449_V450delinsNL	ENST00000220592	NM_012154.3	449	aaGGtg/aaTTtg																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61323026	61323026	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	126	375	0	ENST00000283752.5:c.1038del	p.Thr347ProfsTer3	p.T347Pfs*3	ENST00000283752	NM_006919.2	346	gcC/gc																																																																															
ALB	213	MSKCC	GRCh37	4	74280853	74280853	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	104	259	0	ENST00000295897.4:c.1160C>G	p.Ala387Gly	p.A387G	ENST00000295897	NM_000477.5	387	gCt/gGt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482861	67482861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	51	499	0	ENST00000327367.4:c.1265C>T	p.Ser422Phe	p.S422F	ENST00000327367	NM_005902.3	422	tCc/tTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044970	47044970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	18	320	0	ENST00000329236.7:c.2062C>T	p.Arg688Cys	p.R688C	ENST00000329236	NM_001204466.1	688	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0074295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	18	337	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123904	46123904	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0074295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	20	481	0	ENST00000334344.6:c.170T>A	p.Leu57Ter	p.L57*	ENST00000334344	NM_152641.2	57	tTa/tAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47142982	47142982	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074301-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	77	394	0	ENST00000409792.3:c.4981G>C	p.Glu1661Gln	p.E1661Q	ENST00000409792	NM_014159.6	1661	Gag/Cag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163857	47163857	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0074301-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	127	629	0	ENST00000409792.3:c.2269C>T	p.Gln757Ter	p.Q757*	ENST00000409792	NM_014159.6	757	Caa/Taa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28609809	28609809	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0074301-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	33	513	0	ENST00000241453.7:c.1420T>G	p.Cys474Gly	p.C474G	ENST00000241453	NM_004119.2	474	Tgc/Ggc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779449	3779449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074301-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			746	115	675	0	ENST00000262367.5:c.5599C>T	p.Arg1867Trp	p.R1867W	ENST00000262367	NM_004380.2	1867	Cgg/Tgg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933218	39933218	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074301-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	125	349	0	ENST00000378444.4:c.1381del	p.Met461TrpfsTer15	p.M461Wfs*15	ENST00000378444	NM_001123385.1	461	Atg/tg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139804399	139804399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074301-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	35	511	0	ENST00000247668.2:c.556C>T	p.Pro186Ser	p.P186S	ENST00000247668	NM_021138.3	186	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0074302-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	60	666	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599874	10599874	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074302-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	65	723	0	ENST00000171111.5:c.1702G>T	p.Val568Phe	p.V568F	ENST00000171111	NM_203500.1	568	Gtc/Ttc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032564	47032564	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074302-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	53	369	0	ENST00000329236.7:c.241del	p.Glu81ArgfsTer4	p.E81Rfs*4	ENST00000329236	NM_001204466.1	80	cGg/cg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670324	134670324	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775406650		P-0074302-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	29	730	2	ENST00000398015.3:c.235C>T	p.Arg79Trp	p.R79W	ENST00000398015	NM_004441.4	79	Cgg/Tgg																																																																															
CTR9	9646	MSKCC	GRCh37	11	10785293	10785293	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074302-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	72	628	0	ENST00000361367.2:c.1061G>T	p.Arg354Leu	p.R354L	ENST00000361367	NM_014633.3	354	cGa/cTa																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45873445	45873445	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074302-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	24	703	0	ENST00000391945.4:c.51C>G	p.Ile17Met	p.I17M	ENST00000391945	NM_000400.3	17	atC/atG																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45873440	45873440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074302-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	26	713	0	ENST00000391945.4:c.56C>T	p.Pro19Leu	p.P19L	ENST00000391945	NM_000400.3	19	cCc/cTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374139	118374139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074302-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	66	745	0	ENST00000534358.1:c.7532C>T	p.Ser2511Phe	p.S2511F	ENST00000534358	NM_005933.3	2511	tCt/tTt																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346298	152346298	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074302-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	47	670	0	ENST00000359321.1:c.272G>T	p.Arg91Leu	p.R91L	ENST00000359321	NM_005431.1	91	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0074330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	180	762	0	ENST00000269305.4:c.560-1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0074330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	61	333	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55136799	55136799	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0074330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	37	247	0	ENST00000257290.5:c.1122-1G>T		p.X374_splice	ENST00000257290	NM_006206.4	374																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151878569	151878569	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	202	584	0	ENST00000262189.6:c.6376A>G	p.Thr2126Ala	p.T2126A	ENST00000262189	NM_170606.2	2126	Aca/Gca																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143159096	143159096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0074330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	29	344	0	ENST00000262992.4:c.757G>T	p.Glu253Ter	p.E253*	ENST00000262992	NM_001101669.1	253	Gag/Tag																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337653	73337653	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0074330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	81	381	0	ENST00000377767.4:c.2063T>G	p.Leu688Arg	p.L688R	ENST00000377767	NM_014953.3	688	cTt/cGt																																																																															
MDM4	4194	MSKCC	GRCh37	1	204495534	204495534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	53	229	0	ENST00000367182.3:c.125C>T	p.Ala42Val	p.A42V	ENST00000367182	NM_001278516.1	42	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	98	340	0	ENST00000269305.4:c.808T>C	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	Ttt/Ctt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600447	10600447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	114	457	0	ENST00000171111.5:c.1408C>T	p.Arg470Cys	p.R470C	ENST00000171111	NM_203500.1	470	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581177	48581177	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0074331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	65	277	0	ENST00000342988.3:c.481G>T	p.Glu161Ter	p.E161*	ENST00000342988	NM_005359.5	161	Gaa/Taa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374302	138374302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	47	309	0	ENST00000289153.2:c.3142G>A	p.Ala1048Thr	p.A1048T	ENST00000289153	NM_006219.2	1048	Gcg/Acg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524129	187524129	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0074331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	73	391	0	ENST00000441802.2:c.11410G>T	p.Glu3804Ter	p.E3804*	ENST00000441802	NM_005245.3	3804	Gaa/Taa																																																																															
NUF2	83540	MSKCC	GRCh37	1	163325124	163325125	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TC			P-0074331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	31	218	0	ENST00000271452.3:c.1261-1_1261delinsTC		p.X421_splice	ENST00000271452	NM_145697.2	421																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21974772	21974772	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	81	497	0	ENST00000304494.5:c.55G>C	p.Ala19Pro	p.A19P	ENST00000304494	NM_000077.4	19	Gcc/Ccc																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50479178	50479178	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	65	414	0	ENST00000394963.4:c.26C>G	p.Ser9Cys	p.S9C	ENST00000394963	NM_003076.4	9	tCt/tGt																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631980	90631980	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0074331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	74	320	0	ENST00000330062.3:c.374-1G>A		p.X125_splice	ENST00000330062	NM_002168.2	125																																																																																
FAM46C	54855	MSKCC	GRCh37	1	118165725	118165725	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	84	506	0	ENST00000369448.3:c.235G>T	p.Val79Phe	p.V79F	ENST00000369448	NM_017709.3	79	Gtt/Ttt																																																																															
AXL	558	MSKCC	GRCh37	19	41749588	41749588	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	244	387	0	ENST00000301178.4:c.1513A>T	p.Ser505Cys	p.S505C	ENST00000301178	NM_021913.4	505	Agt/Tgt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0074332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			796	172	494	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0074332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	70	387	2				ENST00000310581	NM_198253.2																																																																																	
BABAM1	29086	MSKCC	GRCh37	19	17379797	17379797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	89	423	0	ENST00000359435.4:c.182G>A	p.Gly61Glu	p.G61E	ENST00000359435	NM_001033549.1	61	gGg/gAg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99162501	99162501	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	40	368	0	ENST00000074304.5:c.1019T>C	p.Ile340Thr	p.I340T	ENST00000074304	NM_001134224.1	340	aTa/aCa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057582	180057582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	83	400	0	ENST00000261937.6:c.373G>T	p.Ala125Ser	p.A125S	ENST00000261937	NM_182925.4	125	Gcc/Tcc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858384	9858384	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200526162		P-0051040-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			323	24	292	0	ENST00000330684.3:c.3017C>T	p.Ala1006Val	p.A1006V	ENST00000330684	NM_001134407.1	1006	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577157	7577157	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs1060501207		P-0051040-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			294	34	235	0	ENST00000269305.4:c.783-2A>G		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
IRS1	3667	MSKCC	GRCh37	2	227660649	227660649	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051040-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			376	28	317	0	ENST00000305123.5:c.2806A>T	p.Thr936Ser	p.T936S	ENST00000305123	NM_005544.2	936	Act/Tct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097713	27097713	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1023884503		P-0071549-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			342	178	362	0	ENST00000324856.7:c.3302A>G	p.Tyr1101Cys	p.Y1101C	ENST00000324856	NM_006015.4	1101	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs587780070		P-0071549-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			361	173	382	0	ENST00000269305.4:c.535C>G	p.His179Asp	p.H179D	ENST00000269305	NM_001126112.2	179	Cat/Gat																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921575	39921575	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071549-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			149	165	152	0	ENST00000378444.4:c.4245del	p.Glu1415AspfsTer69	p.E1415Dfs*69	ENST00000378444	NM_001123385.1	1415	gaG/ga																																																																															
KIT	3815	MSKCC	GRCh37	4	55592073	55592073	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071549-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			405	79	284	0	ENST00000288135.5:c.1397G>C	p.Gly466Ala	p.G466A	ENST00000288135	NM_000222.2	466	gGg/gCg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151880071	151880071	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0073308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	36	146	0	ENST00000262189.6:c.5253G>A	p.Trp1751Ter	p.W1751*	ENST00000262189	NM_170606.2	1751	tgG/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0073308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	332	151	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
ATM	472	MSKCC	GRCh37	11	108122740	108122740	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	19	132	0	ENST00000278616.4:c.1784del	p.Val595GlyfsTer19	p.V595Gfs*19	ENST00000278616	NM_000051.3	595	gTg/gg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981549	201981549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073894-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	58	395	0	ENST00000359651.3:c.463G>A	p.Asp155Asn	p.D155N	ENST00000359651		155	Gac/Aac																																																																															
FLT1	2321	MSKCC	GRCh37	13	29005367	29005367	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073894-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	37	366	0	ENST00000282397.4:c.894T>G	p.Ile298Met	p.I298M	ENST00000282397	NM_002019.4	298	atT/atG																																																																															
NSD1	64324	MSKCC	GRCh37	5	176720964	176720964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	27	344	0	ENST00000439151.2:c.6595C>T	p.Arg2199Cys	p.R2199C	ENST00000439151	NM_022455.4	2199	Cgt/Tgt																																																																															
AXL	558	MSKCC	GRCh37	19	41727880	41727880	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756018335		P-0074158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	18	295	1	ENST00000301178.4:c.505G>A	p.Val169Met	p.V169M	ENST00000301178	NM_021913.4	169	Gtg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426972	49426973	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0074158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	39	343	0	ENST00000301067.7:c.11515dup	p.Gln3839ProfsTer173	p.Q3839Pfs*173	ENST00000301067	NM_003482.3	3839	cag/cCag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41279495	41279513	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATGTTTATCTAGACTGCTG	ATGTTTATCTAGACTGCTG	-			P-0074158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	17	308	0	ENST00000349496.5:c.2077-10_2085del		p.X693_splice	ENST00000349496	NM_001904.3	693																																																																																
PIK3C3	5289	MSKCC	GRCh37	18	39613907	39613908	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0074158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	20	262	0	ENST00000262039.4:c.1825_1826del	p.Ala609TyrfsTer4	p.A609Yfs*4	ENST00000262039	NM_002647.2	609	GCt/t																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0074159-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	49	308	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
CBFB	865	MSKCC	GRCh37	16	67070660	67070660	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0074159-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	54	244	0	ENST00000412916.2:c.282+2T>C		p.X94_splice	ENST00000412916		94																																																																																
CDH1	999	MSKCC	GRCh37	16	68845606	68845606	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074159-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	64	184	0	ENST00000261769.5:c.852del	p.Thr285GlnfsTer9	p.T285Qfs*9	ENST00000261769	NM_004360.3	284	gtC/gt																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502468	186502496	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTATTCCCTGTATTAAAGGTAAAAGAAAC	TTATTCCCTGTATTAAAGGTAAAAGAAAC	-			P-0074159-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	56	291	0	ENST00000323963.5:c.192_208+12del		p.X64_splice	ENST00000323963		64																																																																																
TP53	7157	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs780442292		P-0074254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	62	417	0	ENST00000269305.4:c.401T>G	p.Phe134Cys	p.F134C	ENST00000269305	NM_001126112.2	134	tTt/tGt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519922		P-0074254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	56	362	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0074254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	48	336	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922694	44922694	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397514628		P-0074254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	38	202	0	ENST00000377967.4:c.1555C>T	p.Arg519Ter	p.R519*	ENST00000377967	NM_021140.2	519	Cga/Tga																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370847	55370847	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	54	310	0	ENST00000297316.4:c.149C>A	p.Ala50Glu	p.A50E	ENST00000297316	NM_022454.3	50	gCg/gAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72994032	72994032	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1381862487		P-0074254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	55	417	0	ENST00000268489.5:c.13G>T	p.Asp5Tyr	p.D5Y	ENST00000268489	NM_006885.3	5	Gac/Tac																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919793	96919793	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	35	372	0	ENST00000258439.3:c.470A>T	p.Gln157Leu	p.Q157L	ENST00000258439	NM_001193304.2	157	cAg/cTg																																																																															
TEK	7010	MSKCC	GRCh37	9	27197390	27197390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	125	413	0	ENST00000380036.4:c.1702C>A	p.Pro568Thr	p.P568T	ENST00000380036	NM_000459.3	568	Cca/Aca																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72881533	72881533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	38	248	0	ENST00000325599.8:c.586C>T	p.Pro196Ser	p.P196S	ENST00000325599	NM_018130.2	196	Cct/Tct																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942160	17942160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	24	328	0	ENST00000458235.1:c.2855C>T	p.Ala952Val	p.A952V	ENST00000458235	NM_000215.3	952	gCc/gTc																																																																															
NADK	65220	MSKCC	GRCh37	1	1686032	1686032	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	38	391	1	ENST00000341426.5:c.794A>T	p.Gln265Leu	p.Q265L	ENST00000341426	NM_023018.4	265	cAg/cTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028766	47028766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	51	223	0	ENST00000329236.7:c.70G>A	p.Asp24Asn	p.D24N	ENST00000329236	NM_001204466.1	24	Gat/Aat																																																																															
TERT	7015	MSKCC	GRCh37	5	1294096	1294096	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	47	449	0	ENST00000310581.5:c.905A>T	p.Gln302Leu	p.Q302L	ENST00000310581	NM_198253.2	302	cAg/cTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971157	21971158	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	A			P-0074254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	118	373	0	ENST00000304494.5:c.200_201delinsT	p.Gly67ValfsTer79	p.G67Vfs*79	ENST00000304494	NM_000077.4	67	gGC/gT																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913407		P-0074255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	58	276	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																															
ATR	545	MSKCC	GRCh37	3	142180831	142180831	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	47	256	0	ENST00000350721.4:c.7143C>G	p.Asn2381Lys	p.N2381K	ENST00000350721	NM_001184.3	2381	aaC/aaG																																																																															
YES1	7525	MSKCC	GRCh37	18	745750	745750	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	46	341	0	ENST00000314574.4:c.682G>C	p.Ala228Pro	p.A228P	ENST00000314574	NM_005433.3	228	Gca/Cca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974702	21974702	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			43	10	317	0	ENST00000304494.5:c.125del	p.Asn42IlefsTer11	p.N42Ifs*11	ENST00000304494	NM_000077.4	42	aAt/at																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44966758	44966759	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0074281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			40	10	141	0	ENST00000377967.4:c.3983dup	p.His1329SerfsTer4	p.H1329Sfs*4	ENST00000377967	NM_021140.2	1328	gct/gCct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0069218-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			408	10	251	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937348	32937348	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80359035		P-0073008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	152	359	0	ENST00000380152.3:c.8009C>T	p.Ser2670Leu	p.S2670L	ENST00000380152		2670	tCg/tTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214854	36214854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	89	475	0	ENST00000222270.7:c.3280G>T	p.Asp1094Tyr	p.D1094Y	ENST00000222270	NM_014727.1	1094	Gac/Tac																																																																															
POT1	25913	MSKCC	GRCh37	7	124487005	124487018	+	frameshift_variant	Frame_Shift_Del	DEL	ATAGCTGTTGACAT	ATAGCTGTTGACAT	-			P-0073008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	80	219	0	ENST00000357628.3:c.984_997del	p.Arg328SerfsTer38	p.R328Sfs*38	ENST00000357628	NM_015450.2	328	agATGTCAACAGCTATct/agct																																																																															
POT1	25913	MSKCC	GRCh37	7	124493078	124493078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	74	345	0	ENST00000357628.3:c.817C>T	p.Arg273Trp	p.R273W	ENST00000357628	NM_015450.2	273	Cgg/Tgg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922936	44922936	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	182	226	0	ENST00000377967.4:c.1797del	p.Gly600GlufsTer25	p.G600Efs*25	ENST00000377967	NM_021140.2	599	acA/ac																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0074011-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	110	321	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0074011-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	110	418	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998537	100998537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074011-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	51	369	0	ENST00000325455.5:c.1265C>A	p.Pro422Gln	p.P422Q	ENST00000325455	NM_001202474.3	422	cCg/cAg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942084	81942084	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074011-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			799	89	386	0	ENST00000359376.3:c.1621A>T	p.Thr541Ser	p.T541S	ENST00000359376	NM_002661.3	541	Acg/Tcg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28636013	28636013	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0074011-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	62	334	0	ENST00000241453.7:c.359T>A	p.Leu120Ter	p.L120*	ENST00000241453	NM_004119.2	120	tTa/tAa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121437403	121437403	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074011-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	100	375	0	ENST00000257555.6:c.1741G>C	p.Ala581Pro	p.A581P	ENST00000257555		581	Gcc/Ccc																																																																															
FYN	2534	MSKCC	GRCh37	6	112017593	112017593	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0074011-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	125	326	0	ENST00000368678.4:c.920C>G	p.Ser307Ter	p.S307*	ENST00000368678		307	tCa/tGa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971101	21971292	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAA	GCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAA	-			P-0074011-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	57	356	0	ENST00000304494.5:c.151-85_257del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
SMARCA2	6595	MSKCC	GRCh37	9	2115837	2115837	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074011-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	193	398	0	ENST00000349721.2:c.3472G>T	p.Asp1158Tyr	p.D1158Y	ENST00000349721	NM_003070.3	1158	Gac/Tac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829802	72829808	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTCCT	AAGTCCT	-			P-0074011-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	47	412	0	ENST00000268489.5:c.6773_6779del	p.Gln2258ProfsTer20	p.Q2258Pfs*20	ENST00000268489	NM_006885.3	2258	cAGGACTTc/cc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0074013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	31	222	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398123121		P-0074013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	175	437	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579390	7579393	+	frameshift_variant	Frame_Shift_Del	DEL	GGAA	GGAA	-	rs730882015		P-0074013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	182	461	0	ENST00000269305.4:c.294_297del	p.Ser99ArgfsTer23	p.S99Rfs*23	ENST00000269305	NM_001126112.2	98	ccTTCC/cc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47710066	47710066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	98	248	0	ENST00000233146.2:c.2783C>T	p.Ser928Leu	p.S928L	ENST00000233146	NM_000251.2	928	tCa/tTa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117872	70117872	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	349	423	0	ENST00000245479.2:c.340G>T	p.Val114Leu	p.V114L	ENST00000245479	NM_000346.3	114	Gtg/Ttg																																																																															
MGA	23269	MSKCC	GRCh37	15	42002919	42002919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	78	303	0	ENST00000219905.7:c.2456G>A	p.Arg819His	p.R819H	ENST00000219905	NM_001164273.1	819	cGt/cAt																																																																															
CCND3	896	MSKCC	GRCh37	6	41904331	41904331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	67	361	0	ENST00000372991.4:c.677C>T	p.Thr226Ile	p.T226I	ENST00000372991	NM_001760.3	226	aCa/aTa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145717	11145717	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	185	482	0	ENST00000344626.4:c.4079A>T	p.Glu1360Val	p.E1360V	ENST00000344626	NM_003072.3	1360	gAg/gTg																																																																															
AKT1	207	MSKCC	GRCh37	14	105239420	105239420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074016-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	11	441	0	ENST00000349310.3:c.967G>A	p.Asp323Asn	p.D323N	ENST00000349310	NM_001014432.1	323	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7573991	7573991	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0074016-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	225	285	0	ENST00000269305.4:c.1036G>T	p.Glu346Ter	p.E346*	ENST00000269305	NM_001126112.2	346	Gag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254623	16254623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074016-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	124	378	0	ENST00000375759.3:c.1888C>A	p.Arg630Ser	p.R630S	ENST00000375759	NM_015001.2	630	Cgt/Agt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36215964	36215965	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0074016-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	201	361	1	ENST00000222270.7:c.3504_3505delinsAA	p.His1169Asn	p.H1169N	ENST00000222270	NM_014727.1	1168	gtGCac/gtAAac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969496	44969496	+	splice_donor_variant	Splice_Site	DEL	T	T	-			P-0074016-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			39	83	249	0	ENST00000377967.4:c.4176+2del		p.X1392_splice	ENST00000377967	NM_021140.2	1392																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106523505	106523505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	17	300	0	ENST00000359195.3:c.2657C>T	p.Thr886Met	p.T886M	ENST00000359195	NM_002649.2	886	aCg/aTg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918502	44918502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0074019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	17	134	0	ENST00000377967.4:c.985C>T	p.Gln329Ter	p.Q329*	ENST00000377967	NM_021140.2	329	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879559	151879559	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0074019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	38	392	0	ENST00000262189.6:c.5386C>T	p.Gln1796Ter	p.Q1796*	ENST00000262189	NM_170606.2	1796	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0074021-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	194	307	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0074021-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	157	407	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52637690	52637690	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1239654517		P-0074021-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	109	343	0	ENST00000394830.3:c.2626C>T	p.Arg876Cys	p.R876C	ENST00000394830	NM_018313.4	876	Cgt/Tgt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115729	8115729	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0074021-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	268	415	1	ENST00000346208.3:c.1075G>T	p.Glu359Ter	p.E359*	ENST00000346208		359	Gaa/Taa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118348808	118348808	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1131691799		P-0074021-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	167	475	0	ENST00000534358.1:c.3461G>A	p.Arg1154Gln	p.R1154Q	ENST00000534358	NM_005933.3	1154	cGg/cAg																																																																															
RAD51	5888	MSKCC	GRCh37	15	40998439	40998439	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0074021-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	92	339	0	ENST00000267868.3:c.290C>G	p.Ser97Ter	p.S97*	ENST00000267868	NM_002875.4	97	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577545	+	frameshift_variant	Frame_Shift_Del	DEL	GGTTCAT	GGTTCAT	-			P-0074021-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	234	426	0	ENST00000269305.4:c.736_742del	p.Met246GlyfsTer97	p.M246Gfs*97	ENST00000269305	NM_001126112.2	246	ATGAACCgg/gg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30105547	30105547	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074021-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	123	482	0	ENST00000331968.5:c.1139del	p.Gly380AlafsTer28	p.G380Afs*28	ENST00000331968	NM_002742.2	380	gGc/gc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3801761	3801761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074021-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	389	472	0	ENST00000262367.5:c.3745G>A	p.Val1249Met	p.V1249M	ENST00000262367	NM_004380.2	1249	Gtg/Atg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11317061	11317061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	73	441	0	ENST00000361445.4:c.433G>A	p.Val145Met	p.V145M	ENST00000361445	NM_004958.3	145	Gtg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0029690-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			636	675	304	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578230	7578230	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029690-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			728	47	432	0	ENST00000269305.4:c.619del	p.Asp207MetfsTer40	p.D207Mfs*40	ENST00000269305	NM_001126112.2	207	Gat/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0074090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	10	201	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0074165-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	104	252	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098423	11098423	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs549254467		P-0074165-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	51	318	0	ENST00000344626.4:c.941C>T	p.Ala314Val	p.A314V	ENST00000344626	NM_003072.3	314	gCg/gTg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4117551	4117551	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121434498		P-0074165-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	9	135	0	ENST00000262948.5:c.169T>A	p.Phe57Ile	p.F57I	ENST00000262948	NM_030662.3	57	Ttt/Att																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986849	36986850	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0074165-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	103	367	0	ENST00000354822.5:c.839dup	p.Gln281SerfsTer158	p.Q281Sfs*158	ENST00000354822	NM_001079668.2	280	gct/gcCt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986824	36986912	+	frameshift_variant	Frame_Shift_Del	DEL	CCACGCGTCGCGGCGACTGCTGCTGAGCCTGTTGCTGCTGCGGGCACCCGGTGCCCCCGCCGCCCCCGCCGCCGCCGCTGTCCTGCTGC	CCACGCGTCGCGGCGACTGCTGCTGAGCCTGTTGCTGCTGCGGGCACCCGGTGCCCCCGCCGCCCCCGCCGCCGCCGCTGTCCTGCTGC	-			P-0074165-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	78	338	0	ENST00000354822.5:c.777_865del	p.Gln260GlyfsTer149	p.Q260Gfs*149	ENST00000354822	NM_001079668.2	259	ctGCAGCAGGACAGCGGCGGCGGCGGGGGCGGCGGGGGCACCGGGTGCCCGCAGCAGCAACAGGCTCAGCAGCAGTCGCCGCGACGCGTGGcg/ctcg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	48	297	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436599	49436599	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs886041405		P-0074168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	29	320	1	ENST00000301067.7:c.5707C>T	p.Arg1903Ter	p.R1903*	ENST00000301067	NM_003482.3	1903	Cga/Tga																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247403	71247403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs540360773		P-0074168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	65	307	0	ENST00000318789.4:c.130G>A	p.Val44Met	p.V44M	ENST00000318789	NM_032682.5	44	Gtg/Atg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120235	70120235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	47	320	0	ENST00000245479.2:c.1237C>T	p.His413Tyr	p.H413Y	ENST00000245479	NM_000346.3	413	Cac/Tac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405110	139405110	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773185855		P-0074168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	33	216	0	ENST00000277541.6:c.2735G>A	p.Arg912Gln	p.R912Q	ENST00000277541	NM_017617.3	912	cGg/cAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101923	11101923	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060502063		P-0074168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	34	314	0	ENST00000344626.4:c.1343G>A	p.Arg448His	p.R448H	ENST00000344626	NM_003072.3	448	cGc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900575	3900575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	24	316	0	ENST00000262367.5:c.521G>A	p.Gly174Asp	p.G174D	ENST00000262367	NM_004380.2	174	gGt/gAt																																																																															
SESN2	83667	MSKCC	GRCh37	1	28607288	28607288	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1160449364		P-0074168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	54	300	0	ENST00000253063.3:c.1418G>A	p.Arg473His	p.R473H	ENST00000253063	NM_031459.4	473	cGt/cAt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861128	57861128	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369128119		P-0074168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	44	270	0	ENST00000228682.2:c.925C>T	p.Arg309Trp	p.R309W	ENST00000228682	NM_005269.2	309	Cgg/Tgg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs193920894		P-0069020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	13	511	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0073982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	194	293	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178479	56178479	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0073982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	62	369	0	ENST00000399503.3:c.3452C>A	p.Ser1151Ter	p.S1151*	ENST00000399503	NM_005921.1	1151	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578204	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0073982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	73	482	0	ENST00000269305.4:c.645dup	p.Val216CysfsTer6	p.V216Cfs*6	ENST00000269305	NM_001126112.2	215	-/T																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178413	56178414	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0073982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	94	355	0	ENST00000399503.3:c.3387dup	p.Ser1130LeufsTer4	p.S1130Lfs*4	ENST00000399503	NM_005921.1	1129	aac/aaCc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134500	2134500	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	89	581	1	ENST00000219476.3:c.4277A>G	p.Glu1426Gly	p.E1426G	ENST00000219476	NM_000548.3	1426	gAa/gGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0074121-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			882	101	392	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0074121-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	58	258	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0074121-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	40	217	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740646	58740647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0074121-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			739	45	350	1	ENST00000305921.3:c.1551_1552insA	p.Pro518ThrfsTer10	p.P518Tfs*10	ENST00000305921	NM_003620.3	517	-/A																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575170	48575180	+	frameshift_variant	Frame_Shift_Del	DEL	AAATGTGATAG	AAATGTGATAG	-			P-0074121-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	49	211	0	ENST00000342988.3:c.364_374del	p.Lys122CysfsTer17	p.K122Cfs*17	ENST00000342988	NM_005359.5	122	AAATGTGATAGt/t																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185169173	185169173	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0074121-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	56	213	0	ENST00000265026.3:c.1268T>G	p.Phe423Cys	p.F423C	ENST00000265026	NM_004721.4	423	tTc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577095	7577095	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519984		P-0074123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	309	424	0	ENST00000269305.4:c.843C>A	p.Asp281Glu	p.D281E	ENST00000269305	NM_001126112.2	281	gaC/gaA																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22160155	22160155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	242	320	0	ENST00000215832.6:c.476C>T	p.Thr159Ile	p.T159I	ENST00000215832	NM_002745.4	159	aCc/aTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860344	151860344	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0074123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	258	449	0	ENST00000262189.6:c.10318G>T	p.Glu3440Ter	p.E3440*	ENST00000262189	NM_170606.2	3440	Gag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0074126-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			883	339	324	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0074126-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			31	242	389	0	ENST00000269305.4:c.920-1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
SETD2	29072	MSKCC	GRCh37	3	47164690	47164690	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074126-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	119	276	0	ENST00000409792.3:c.1436C>A	p.Ser479Tyr	p.S479Y	ENST00000409792	NM_014159.6	479	tCt/tAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	77	372	0	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	89	486	0	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115780	8115780	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	93	447	0	ENST00000346208.3:c.1131del	p.Val378CysfsTer26	p.V378Cfs*26	ENST00000346208		376	Aaa/aa																																																																															
ATM	472	MSKCC	GRCh37	11	108150217	108150217	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	61	292	0	ENST00000278616.4:c.3285-1G>T		p.X1095_splice	ENST00000278616	NM_000051.3	1095																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71941273	71941273	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753375974		P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	83	523	1	ENST00000298229.2:c.1048C>T	p.Arg350Trp	p.R350W	ENST00000298229	NM_001567.3	350	Cgg/Tgg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856514	111856514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	54	407	0	ENST00000341259.2:c.565C>T	p.Arg189Trp	p.R189W	ENST00000341259	NM_005475.2	189	Cgg/Tgg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	50	410	6	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	53	255	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911504	32911504	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	86	327	0	ENST00000380152.3:c.3015del	p.Phe1005LeufsTer38	p.F1005Lfs*38	ENST00000380152		1004	agT/ag																																																																															
B2M	567	MSKCC	GRCh37	15	45003813	45003813	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	165	360	0	ENST00000558401.1:c.67+2T>C		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	100	505	0	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998923	11998923	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	79	326	0	ENST00000353533.5:c.429del	p.Lys143AsnfsTer9	p.K143Nfs*9	ENST00000353533	NM_003010.3	142	cAa/ca																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	70	391	4	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
NF1	4763	MSKCC	GRCh37	17	29552144	29552144	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	80	299	0	ENST00000358273.4:c.1882del	p.Tyr628ThrfsTer3	p.Y628Tfs*3	ENST00000358273	NM_001042492.2	626	cTt/ct																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866345	37866345	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779346332		P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	45	299	1	ENST00000269571.5:c.650G>A	p.Arg217His	p.R217H	ENST00000269571		217	cGc/cAc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	83	434	1	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	84	521	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437565	56437566	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	76	398	0	ENST00000407977.2:c.896_897del	p.Val299GlyfsTer143	p.V299Gfs*143	ENST00000407977		299	gTG/g																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	39	330	1	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	60	386	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78866562	78866562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778224744		P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	70	352	0	ENST00000306801.3:c.2135C>T	p.Pro712Leu	p.P712L	ENST00000306801	NM_020761.2	712	cCg/cTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912580		P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	102	306	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	72	453	0	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111907687	111907687	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373945451		P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	76	355	0	ENST00000393256.3:c.461G>A	p.Arg154His	p.R154H	ENST00000393256	NM_006538.4	154	cGt/cAt																																																																															
CASP8	841	MSKCC	GRCh37	2	202149570	202149570	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	91	387	0	ENST00000358485.4:c.1014del	p.Phe338LeufsTer11	p.F338Lfs*11	ENST00000358485	NM_001080125.1	337	caT/ca																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	70	443	0	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC	rs1361078163		P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	46	431	0	ENST00000234420.5:c.3260_3261dup	p.Phe1088ProfsTer3	p.F1088Pfs*3	ENST00000234420	NM_000179.2	1085	acc/aCCcc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884858	134884858	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774975718		P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	55	280	0	ENST00000398015.3:c.1634C>T	p.Ser545Leu	p.S545L	ENST00000398015	NM_004441.4	545	tCg/tTg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185169182	185169182	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	63	293	0	ENST00000265026.3:c.1277A>G	p.Gln426Arg	p.Q426R	ENST00000265026	NM_004721.4	426	cAg/cGg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266134	41266136	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	183	365	0	ENST00000349496.5:c.133_135del	p.Ser45del	p.S45del	ENST00000349496	NM_001904.3	44	cCTTct/cct																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651531	52651531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	74	355	0	ENST00000394830.3:c.1565G>A	p.Arg522Gln	p.R522Q	ENST00000394830	NM_018313.4	522	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175166	112175166	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371113837		P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	66	348	0	ENST00000257430.4:c.3875C>T	p.Thr1292Met	p.T1292M	ENST00000257430	NM_000038.5	1292	aCg/aTg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	79	410	7	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521974	157521974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772972321		P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	100	470	1	ENST00000346085.5:c.4246C>T	p.Arg1416Cys	p.R1416C	ENST00000346085	NM_020732.3	1416	Cgc/Tgc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341779	8341779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	92	369	0	ENST00000356435.5:c.4861C>T	p.Pro1621Ser	p.P1621S	ENST00000356435		1621	Cca/Tca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484207	8484207	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773612496		P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	77	352	0	ENST00000356435.5:c.3325C>T	p.Arg1109Cys	p.R1109C	ENST00000356435		1109	Cgt/Tgt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87563404	87563404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	89	403	0	ENST00000277120.3:c.1792C>T	p.Arg598Cys	p.R598C	ENST00000277120		598	Cgc/Tgc																																																																															
STK40	83931	MSKCC	GRCh37	1	36820830	36820830	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140502024		P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	68	385	0	ENST00000373129.3:c.547C>T	p.Arg183Cys	p.R183C	ENST00000373129	NM_032017.1	183	Cgc/Tgc																																																																															
MSI1	4440	MSKCC	GRCh37	12	120784126	120784126	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	57	369	0	ENST00000257552.2:c.860-1G>T		p.X287_splice	ENST00000257552	NM_002442.3	287																																																																																
SMAD3	4088	MSKCC	GRCh37	15	67457622	67457623	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	74	444	0	ENST00000327367.4:c.435_436del	p.Glu145AspfsTer20	p.E145Dfs*20	ENST00000327367	NM_005902.3	144	acAGag/acag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348460	89348461	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	82	525	0	ENST00000301030.4:c.4489_4490del	p.Arg1497GlyfsTer56	p.R1497Gfs*56	ENST00000301030	NM_001256183.1	1497	AGg/g																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246816	41246818	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	103	318	0	ENST00000357654.3:c.730_732del	p.Asn244del	p.N244del	ENST00000357654	NM_007294.3	244	AAT/-																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604690	48604691	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	79	384	0	ENST00000342988.3:c.1514_1515del	p.Phe505CysfsTer21	p.F505Cfs*21	ENST00000342988	NM_005359.5	504	agTTtt/agtt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144459	11144459	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	43	292	0	ENST00000344626.4:c.3791del	p.Thr1264ArgfsTer27	p.T1264Rfs*27	ENST00000344626	NM_003072.3	1264	aCg/ag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226347	2226347	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1358981741		P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	73	501	1	ENST00000398665.3:c.3827G>A	p.Arg1276Gln	p.R1276Q	ENST00000398665	NM_032482.2	1276	cGg/cAg																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6270764	6270764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	83	478	0	ENST00000252674.7:c.19G>A	p.Val7Ile	p.V7I	ENST00000252674	NM_005934.3	7	Gtc/Atc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39249716	39249716	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	14	251	0	ENST00000402219.2:c.1853A>G	p.Tyr618Cys	p.Y618C	ENST00000402219	NM_005633.3	618	tAc/tGc																																																																															
SRC	6714	MSKCC	GRCh37	20	36024633	36024633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	72	426	0	ENST00000358208.4:c.622C>T	p.Arg208Cys	p.R208C	ENST00000358208		208	Cgc/Tgc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196072	138196072	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs183020993		P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	87	357	0	ENST00000237289.4:c.386C>T	p.Thr129Met	p.T129M	ENST00000237289	NM_001270507.1	129	aCg/aTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946272	2946272	+	stop_lost	Nonstop_Mutation	SNP	T	T	A			P-0074130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	58	351	0	ENST00000396946.4:c.3465A>T	p.Ter1155CysextTer16	p.*1155Cext*16	ENST00000396946	NM_032415.4	1155	tgA/tgT																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914127	32914127	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs55996097		P-0074131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	36	372	0	ENST00000380152.3:c.5635G>T	p.Glu1879Ter	p.E1879*	ENST00000380152		1879	Gag/Tag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098984	178098984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	82	319	0	ENST00000397062.3:c.61G>A	p.Asp21Asn	p.D21N	ENST00000397062	NM_006164.4	21	Gac/Aac																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190821	11190821	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	31	363	0	ENST00000361445.4:c.5378G>T	p.Trp1793Leu	p.W1793L	ENST00000361445	NM_004958.3	1793	tGg/tTg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2104166	2104166	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	25	284	0	ENST00000349721.2:c.3289G>T	p.Asp1097Tyr	p.D1097Y	ENST00000349721	NM_003070.3	1097	Gat/Tat																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18491365	18491365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	27	272	0	ENST00000266497.5:c.1278C>A	p.Asn426Lys	p.N426K	ENST00000266497		426	aaC/aaA																																																																															
NF2	4771	MSKCC	GRCh37	22	30057237	30057237	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	20	404	0	ENST00000338641.4:c.719G>C	p.Gly240Ala	p.G240A	ENST00000338641	NM_000268.3	240	gGg/gCg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748077	72748077	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	44	370	0	ENST00000357731.5:c.101C>G	p.Ala34Gly	p.A34G	ENST00000357731	NM_173808.2	34	gCt/gGt																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446613	29446613	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	34	319	0	ENST00000544604.2:c.2444C>A	p.Pro815Gln	p.P815Q	ENST00000544604	NM_001206998.1	815	cCg/cAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76937284	76937284	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0074131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	10	184	0	ENST00000373344.5:c.3464C>G	p.Ser1155Ter	p.S1155*	ENST00000373344	NM_000489.3	1155	tCa/tGa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857835	9857835	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	42	448	0	ENST00000330684.3:c.3566A>T	p.Lys1189Met	p.K1189M	ENST00000330684	NM_001134407.1	1189	aAg/aTg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794786	242794786	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	15	330	0	ENST00000334409.5:c.423G>C	p.Glu141Asp	p.E141D	ENST00000334409	NM_005018.2	141	gaG/gaC																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279915	18279915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	44	306	0	ENST00000222254.8:c.1998G>T	p.Lys666Asn	p.K666N	ENST00000222254	NM_005027.3	666	aaG/aaT																																																																															
POLE	5426	MSKCC	GRCh37	12	133215806	133215806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	35	273	0	ENST00000320574.5:c.5457G>A	p.Met1819Ile	p.M1819I	ENST00000320574	NM_006231.2	1819	atG/atA																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937679	36937679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	21	367	0	ENST00000361632.4:c.1059G>T	p.Gln353His	p.Q353H	ENST00000361632		353	caG/caT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435206	49435206	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1225508238		P-0074131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	37	308	0	ENST00000301067.7:c.6347C>T	p.Pro2116Leu	p.P2116L	ENST00000301067	NM_003482.3	2116	cCg/cTg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515222	149515222	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0074131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	22	454	0	ENST00000261799.4:c.260T>G	p.Leu87Arg	p.L87R	ENST00000261799	NM_002609.3	87	cTg/cGg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30105593	30105593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	34	395	0	ENST00000331968.5:c.1093G>A	p.Val365Ile	p.V365I	ENST00000331968	NM_002742.2	365	Gtc/Atc																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225626	26225626	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373685271		P-0074131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	39	591	0	ENST00000360408.1:c.244G>A	p.Asp82Asn	p.D82N	ENST00000360408	NM_003532.2	82	Gac/Aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0074132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	313	332	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730882026		P-0074132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	215	317	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53224432	53224432	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	57	363	0	ENST00000375401.3:c.3281C>A	p.Ser1094Tyr	p.S1094Y	ENST00000375401	NM_004187.3	1094	tCt/tAt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033372	48033372	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794746		P-0074132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	116	379	0	ENST00000234420.5:c.3676G>A	p.Ala1226Thr	p.A1226T	ENST00000234420	NM_000179.2	1226	Gca/Aca																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416816	121416816	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	93	407	0	ENST00000257555.6:c.245C>A	p.Thr82Lys	p.T82K	ENST00000257555		82	aCg/aAg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204891	128204891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	89	344	0	ENST00000341105.2:c.550G>A	p.Asp184Asn	p.D184N	ENST00000341105	NM_032638.4	184	Gac/Aac																																																																															
BRAF	673	MSKCC	GRCh37	7	140481412	140481412	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913353		P-0074133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	82	292	0	ENST00000288602.6:c.1396G>A	p.Gly466Arg	p.G466R	ENST00000288602	NM_004333.4	466	Gga/Aga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119789	70119789	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778047936		P-0074133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	95	322	0	ENST00000245479.2:c.791G>A	p.Arg264Lys	p.R264K	ENST00000245479	NM_000346.3	264	aGa/aAa																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119634895	119634895	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0074133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	97	336	0	ENST00000316626.5:c.604G>T	p.Gly202Ter	p.G202*	ENST00000316626		202	Gga/Tga																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285474	38285474	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	116	431	0	ENST00000425967.3:c.679G>C	p.Glu227Gln	p.E227Q	ENST00000425967	NM_001174067.1	227	Gaa/Caa																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735635	204735635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	218	399	0	ENST00000302823.3:c.436G>A	p.Gly146Arg	p.G146R	ENST00000302823	NM_005214.4	146	Gga/Aga																																																																															
ATRX	546	MSKCC	GRCh37	X	76939783	76939783	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0074133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	113	407	0	ENST00000373344.5:c.965C>G	p.Ser322Ter	p.S322*	ENST00000373344	NM_000489.3	322	tCa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0074133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	70	272	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683431	88683431	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	20	88	0	ENST00000372037.3:c.1554G>C	p.Lys518Asn	p.K518N	ENST00000372037	NM_004329.2	518	aaG/aaC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49422636	49422636	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0074133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	129	384	0	ENST00000301067.7:c.14357T>A	p.Leu4786His	p.L4786H	ENST00000301067	NM_003482.3	4786	cTc/cAc																																																																															
BARD1	580	MSKCC	GRCh37	2	215674252	215674252	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	163	271	0	ENST00000260947.4:c.42C>G	p.Ile14Met	p.I14M	ENST00000260947	NM_000465.2	14	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7573973	7573973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0074133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	112	348	0	ENST00000269305.4:c.1054G>C	p.Asp352His	p.D352H	ENST00000269305	NM_001126112.2	352	Gat/Cat																																																																															
POLE	5426	MSKCC	GRCh37	12	133218417	133218417	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	76	338	0	ENST00000320574.5:c.5194C>G	p.Gln1732Glu	p.Q1732E	ENST00000320574	NM_006231.2	1732	Cag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs863224683		P-0074134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	35	468	0	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149238611	149238611	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	31	425	0	ENST00000360632.3:c.1184C>A	p.Pro395His	p.P395H	ENST00000360632	NM_015472.4	395	cCc/cAc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56862953	56862953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	35	450	0	ENST00000308159.5:c.859C>T	p.Pro287Ser	p.P287S	ENST00000308159	NM_014669.4	287	Cct/Tct																																																																															
RB1	5925	MSKCC	GRCh37	13	49027217	49027218	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0074134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	39	358	0	ENST00000267163.4:c.1787_1788del	p.Leu596ProfsTer3	p.L596Pfs*3	ENST00000267163	NM_000321.2	595	cCT/c																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151868414	151868414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	28	322	0	ENST00000262189.6:c.9388G>A	p.Gly3130Ser	p.G3130S	ENST00000262189	NM_170606.2	3130	Ggc/Agc																																																																															
ATRX	546	MSKCC	GRCh37	X	76940445	76940446	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	ATTCCATCTGAGTCACGGCTAATATCATCACTCATGTAATACTTAAAGCAATT			P-0074136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	100	154	0	ENST00000373344.5:c.595_647dup	p.Met216IlefsTer8	p.M216Ifs*8	ENST00000373344	NM_000489.3	216	atg/atAATTGCTTTAAGTATTACATGAGTGATGATATTAGCCGTGACTCAGATGGAATg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445776	29445776	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	41	393	0	ENST00000544604.2:c.1607G>T	p.Arg536Leu	p.R536L	ENST00000544604	NM_001206998.1	536	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0074137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	174	429	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0074137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	84	267	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50921117	50921117	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	75	262	0	ENST00000440232.2:c.3237C>G	p.Phe1079Leu	p.F1079L	ENST00000440232	NM_002691.3	1079	ttC/ttG																																																																															
CDK6	1021	MSKCC	GRCh37	7	92462490	92462490	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1368516053		P-0024936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	91	376	0	ENST00000265734.4:c.148G>A	p.Gly50Ser	p.G50S	ENST00000265734	NM_001259.6	50	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	77	250	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539243	187539243	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			789	116	449	0	ENST00000441802.2:c.8497G>T	p.Ala2833Ser	p.A2833S	ENST00000441802	NM_005245.3	2833	Gca/Tca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877337	40877337	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	74	339	0	ENST00000373198.4:c.2359A>G	p.Ile787Val	p.I787V	ENST00000373198	NM_133170.3	787	Atc/Gtc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006881	47006887	+	frameshift_variant,start_lost	Frame_Shift_Del	DEL	ATGGAGT	ATGGAGT	-			P-0024936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	75	391	0	ENST00000329236.7:c.4_10del	p.Glu2LysfsTer81	p.E2Kfs*81	ENST00000329236	NM_001204466.1	1	ATGGAGTat/at																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119666145	119666146	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0024936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	55	298	0	ENST00000316626.5:c.335_336del	p.Leu112SerfsTer9	p.L112Sfs*9	ENST00000316626		112	tTG/t																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672486	30672486	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1117	131	677	0	ENST00000376406.3:c.4474A>G	p.Thr1492Ala	p.T1492A	ENST00000376406	NM_014641.2	1492	Aca/Gca																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0067516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	284	472	0	ENST00000346208.3:c.1003dup	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752411	57752412	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0067516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	162	317	0	ENST00000274289.3:c.1161_1162del	p.Arg387SerfsTer3	p.R387Sfs*3	ENST00000274289	NM_006622.3	387	agAGtg/agtg																																																																															
CDH1	999	MSKCC	GRCh37	16	68853274	68853274	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	96	493	0	ENST00000261769.5:c.1657T>C	p.Phe553Leu	p.F553L	ENST00000261769	NM_004360.3	553	Ttt/Ctt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385171	41385171	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	25	475	0	ENST00000373198.4:c.790A>C	p.Lys264Gln	p.K264Q	ENST00000373198	NM_133170.3	264	Aag/Cag																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250778	26250778	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	99	592	1	ENST00000446824.2:c.56A>G	p.Lys19Arg	p.K19R	ENST00000446824	NM_021018.2	19	aAg/aGg																																																																															
ATR	545	MSKCC	GRCh37	3	142241684	142241684	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0067516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	54	300	0	ENST00000350721.4:c.4153-1G>A		p.X1385_splice	ENST00000350721	NM_001184.3	1385																																																																																
MED12	9968	MSKCC	GRCh37	X	70356401	70356402	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	A			P-0067516-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	76	559	2	ENST00000374080.3:c.5296_5297delinsA	p.Pro1766ThrfsTer49	p.P1766Tfs*49	ENST00000374080		1766	CCc/Ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0073320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	76	366	0	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662577	227662577	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746823533		P-0073320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	22	425	0	ENST00000305123.5:c.878C>T	p.Pro293Leu	p.P293L	ENST00000305123	NM_005544.2	293	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0073320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	82	283	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62322245	62322245	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	T	T	C			P-0073320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	21	322	0	ENST00000482936.1:c.2501T>C	p.Leu834Pro	p.L834P	ENST00000482936		834	cTg/cCg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0073960-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	235	366	0	ENST00000346208.3:c.1002_1003dup	p.Asp335GlyfsTer21	p.D335Gfs*21	ENST00000346208		333	-/GG																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161324	55161324	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514550		P-0073960-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			264	200	360	0	ENST00000257290.5:c.3155C>T	p.Thr1052Met	p.T1052M	ENST00000257290	NM_006206.4	1052	aCg/aTg																																																																															
CBFB	865	MSKCC	GRCh37	16	67100685	67100685	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073960-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			86	209	352	1	ENST00000412916.2:c.383A>G	p.Asp128Gly	p.D128G	ENST00000412916		128	gAt/gGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0073992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	75	245	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631838	90631838	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913503		P-0073992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			870	63	593	0	ENST00000330062.3:c.515G>T	p.Arg172Met	p.R172M	ENST00000330062	NM_002168.2	172	aGg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	70	563	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
SDHA	6389	MSKCC	GRCh37	5	226103	226103	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs553257776		P-0073992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	53	293	0	ENST00000264932.6:c.562C>T	p.Arg188Trp	p.R188W	ENST00000264932	NM_004168.2	188	Cgg/Tgg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	443572	443572	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	101	305	0	ENST00000399788.2:c.1325G>T	p.Gly442Val	p.G442V	ENST00000399788	NM_001042603.1	442	gGt/gTt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225346785	225346785	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	31	275	0	ENST00000264414.4:c.1853A>T	p.Gln618Leu	p.Q618L	ENST00000264414	NM_003590.4	618	cAa/cTa																																																																															
POT1	25913	MSKCC	GRCh37	7	124503668	124503668	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	30	311	0	ENST00000357628.3:c.282G>T	p.Gln94His	p.Q94H	ENST00000357628	NM_015450.2	94	caG/caT																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115859	8115875	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTGAGCCACATCTCG	CCCTGAGCCACATCTCG	-			P-0073993-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	301	156	0	ENST00000346208.3:c.1209_1225del	p.Ser404GlnfsTer97	p.S404Qfs*97	ENST00000346208		402	tCCCTGAGCCACATCTCG/t																																																																															
ATR	545	MSKCC	GRCh37	3	142242942	142242942	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0073993-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	89	118	0	ENST00000350721.4:c.4045C>T	p.Gln1349Ter	p.Q1349*	ENST00000350721	NM_001184.3	1349	Caa/Taa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129061	2129062	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073993-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	76	130	0	ENST00000219476.3:c.2996dup	p.Ser999ArgfsTer7	p.S999Rfs*7	ENST00000219476	NM_000548.3	999	agc/aGgc																																																																															
CDH1	999	MSKCC	GRCh37	16	68849488	68849489	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0073994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	76	368	0	ENST00000261769.5:c.1397_1398del	p.Leu466HisfsTer16	p.L466Hfs*16	ENST00000261769	NM_004360.3	464	gTC/g																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115446	115115446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	106	298	0	ENST00000257566.3:c.880del	p.Ile294Ter	p.I294*	ENST00000257566	NM_016569.3	294	Ata/ta																																																																															
AKT2	208	MSKCC	GRCh37	19	40741894	40741894	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs930976777		P-0073994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	93	406	12	ENST00000392038.2:c.1078G>A	p.Glu360Lys	p.E360K	ENST00000392038	NM_001626.4	360	Gag/Aag																																																																															
CBFB	865	MSKCC	GRCh37	16	67100606	67100606	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	75	309	0	ENST00000412916.2:c.304A>T	p.Ile102Phe	p.I102F	ENST00000412916		102	Att/Ttt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115730	8115765	+	inframe_deletion	In_Frame_Del	DEL	AAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCA	AAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCA	-			P-0073994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	89	307	0	ENST00000346208.3:c.1078_1113del	p.Gly360_Lys371del	p.G360_K371del	ENST00000346208		359	gAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAaa/gaa																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	102	317	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445582	29445582	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	50	433	0	ENST00000544604.2:c.1413C>G	p.His471Gln	p.H471Q	ENST00000544604	NM_001206998.1	471	caC/caG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0073996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	186	572	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0074000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	356	323	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0074000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	639	414	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864564	57864564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	223	429	0	ENST00000228682.2:c.2041C>A	p.Pro681Thr	p.P681T	ENST00000228682	NM_005269.2	681	Cca/Aca																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998141	169998141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1428010723		P-0074000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			993	161	265	0	ENST00000295797.4:c.832C>T	p.Arg278Cys	p.R278C	ENST00000295797	NM_002740.5	278	Cgt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425017	49425017	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0074000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	471	456	0	ENST00000301067.7:c.13471A>T	p.Ile4491Phe	p.I4491F	ENST00000301067	NM_003482.3	4491	Att/Ttt																																																																															
POLE	5426	MSKCC	GRCh37	12	133219242	133219242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	169	399	0	ENST00000320574.5:c.4802C>T	p.Pro1601Leu	p.P1601L	ENST00000320574	NM_006231.2	1601	cCt/cTt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557693	21557693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1585	218	428	0	ENST00000382592.4:c.2152G>A	p.Asp718Asn	p.D718N	ENST00000382592	NM_014572.2	718	Gac/Aac																																																																															
TET1	80312	MSKCC	GRCh37	10	70441156	70441156	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0074000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	260	229	0	ENST00000373644.4:c.4825G>T	p.Glu1609Ter	p.E1609*	ENST00000373644	NM_030625.2	1609	Gaa/Taa																																																																															
INSR	3643	MSKCC	GRCh37	19	7174597	7174597	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0074000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			44	497	326	0	ENST00000302850.5:c.1120G>T	p.Gly374Cys	p.G374C	ENST00000302850	NM_000208.2	374	Ggc/Tgc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155267	185155267	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0074000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			882	374	311	0	ENST00000265026.3:c.508G>T	p.Glu170Ter	p.E170*	ENST00000265026	NM_004721.4	170	Gag/Tag																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128201218	128201218	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0074000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	374	368	0	ENST00000265960.3:c.1517A>G	p.Asn506Ser	p.N506S	ENST00000265960	NM_001006617.1	506	aAc/aGc																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488515	231488515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	382	311	0	ENST00000295050.7:c.878C>T	p.Ala293Val	p.A293V	ENST00000295050	NM_032018.5	293	gCt/gTt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967280	134967280	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0074000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	369	398	0	ENST00000398015.3:c.2619G>C	p.Glu873Asp	p.E873D	ENST00000398015	NM_004441.4	873	gaG/gaC																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964345	70964345	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0074000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	115	238	0	ENST00000276594.2:c.1683C>A	p.Phe561Leu	p.F561L	ENST00000276594	NM_024504.3	561	ttC/ttA																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43745217	43745217	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	414	329	0	ENST00000523873.1:c.130A>G	p.Met44Val	p.M44V	ENST00000523873		44	Atg/Gtg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602249	10602252	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TCAC	TCAC	ACA			P-0074000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			79	511	380	0	ENST00000171111.5:c.1325+1_1325+4delinsTGT		p.X442_splice	ENST00000171111	NM_203500.1	442																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38061205	38061205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074001-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	97	409	0	ENST00000250448.2:c.784C>T	p.Arg262Cys	p.R262C	ENST00000250448	NM_004496.3	262	Cgc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0074002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	61	252	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044508	47044508	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0074002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	83	293	0	ENST00000329236.7:c.1772del	p.Phe591SerfsTer35	p.F591Sfs*35	ENST00000329236	NM_001204466.1	591	Ttc/tc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573174	64573174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0074002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	36	323	0	ENST00000337652.1:c.1133C>T	p.Pro378Leu	p.P378L	ENST00000337652	NM_130803.2	378	cCc/cTc																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14380349	14380349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0074003-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	54	353	0	ENST00000256196.4:c.68G>A	p.Gly23Asp	p.G23D	ENST00000256196		23	gGc/gAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436048	110436050	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0074003-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	14	482	0	ENST00000375856.3:c.2351_2353del	p.Phe784del	p.F784del	ENST00000375856	NM_003749.2	784	tTCTcc/tcc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0057525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	56	271	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			197	59	394	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944157	81944157	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761094228		P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	111	396	1	ENST00000359376.3:c.1766G>A	p.Arg589His	p.R589H	ENST00000359376	NM_002661.3	589	cGc/cAc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81554312	81554313	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTA			P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			161	10	310	0	ENST00000298171.2:c.332_333insTTA	p.Thr111_Arg112insTyr	p.T111_R112insY	ENST00000298171	NM_000369.2	111	acc/acTTAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540654		P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			264	129	464	1	ENST00000269305.4:c.329G>A	p.Arg110His	p.R110H	ENST00000269305	NM_001126112.2	110	cGt/cAt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258889	16258889	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			290	145	470	0	ENST00000375759.3:c.6158del	p.Asn2053ThrfsTer11	p.N2053Tfs*11	ENST00000375759	NM_015001.2	2052	Aaa/aa																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495659	72495659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			242	90	394	0	ENST00000477973.2:c.411G>A	p.Gly138Asp	p.G138D	ENST00000477973	NM_012234.5	138	gGc/gAc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162741934	162741934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			190	92	389	1	ENST00000367921.3:c.1625C>T	p.Ala542Val	p.A542V	ENST00000367921	NM_006182.2	542	gCc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431545	49431545	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			297	135	399	0	ENST00000301067.7:c.9594del	p.Ser3199AlafsTer3	p.S3199Afs*3	ENST00000301067	NM_003482.3	3198	ccC/cc																																																																															
RHEB	6009	MSKCC	GRCh37	7	151188085	151188085	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867628277		P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			97	48	267	0	ENST00000262187.5:c.68C>T	p.Thr23Met	p.T23M	ENST00000262187	NM_005614.3	23	aCg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			65	87	352	8	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																															
FYN	2534	MSKCC	GRCh37	6	112035608	112035608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			124	59	272	0	ENST00000368678.4:c.286C>T	p.Arg96Trp	p.R96W	ENST00000368678		96	Cgg/Tgg																																																																															
KIT	3815	MSKCC	GRCh37	4	55561755	55561755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759250095		P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			182	68	368	0	ENST00000288135.5:c.145C>T	p.Arg49Cys	p.R49C	ENST00000288135	NM_000222.2	49	Cgc/Tgc																																																																															
PARP1	142	MSKCC	GRCh37	1	226578316	226578316	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs193238922		P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			287	132	326	0	ENST00000366794.5:c.412C>T	p.Arg138Cys	p.R138C	ENST00000366794	NM_001618.3	138	Cgc/Tgc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467922	50467922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			237	119	369	0	ENST00000331340.3:c.1157G>A	p.Arg386His	p.R386H	ENST00000331340	NM_006060.4	386	cGc/cAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602892	10602892	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1410344380		P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			312	152	305	0	ENST00000171111.5:c.686T>C	p.Val229Ala	p.V229A	ENST00000171111	NM_203500.1	229	gTg/gCg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43766925	43766925	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			111	66	259	0	ENST00000382044.4:c.1126C>T	p.Arg376Ter	p.R376*	ENST00000382044	NM_001141980.1	376	Cga/Tga																																																																															
MED12	9968	MSKCC	GRCh37	X	70357729	70357729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			102	147	194	0	ENST00000374080.3:c.5980C>T	p.Arg1994Trp	p.R1994W	ENST00000374080		1994	Cgg/Tgg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986961	36986961	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057524869		P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			246	96	351	0	ENST00000354822.5:c.728G>A	p.Arg243His	p.R243H	ENST00000354822	NM_001079668.2	243	cGc/cAc																																																																															
RAD51	5888	MSKCC	GRCh37	15	41022125	41022126	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			171	33	327	0	ENST00000267868.3:c.855dup	p.Pro286ThrfsTer37	p.P286Tfs*37	ENST00000267868	NM_002875.4	283	-/A																																																																															
UPF1	5976	MSKCC	GRCh37	19	18960988	18960988	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1189194959		P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			352	137	341	0	ENST00000262803.5:c.566G>A	p.Arg189His	p.R189H	ENST00000262803	NM_002911.3	189	cGc/cAc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867569	45867569	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			290	137	489	0	ENST00000391945.4:c.739A>G	p.Met247Val	p.M247V	ENST00000391945	NM_000400.3	247	Atg/Gtg																																																																															
APC	324	MSKCC	GRCh37	5	112173295	112173295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			96	56	266	0	ENST00000257430.4:c.2004C>A	p.His668Gln	p.H668Q	ENST00000257430	NM_000038.5	668	caC/caA																																																																															
EZH2	2146	MSKCC	GRCh37	7	148511091	148511091	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			211	124	323	0	ENST00000320356.2:c.1811T>C	p.Val604Ala	p.V604A	ENST00000320356	NM_004456.4	604	gTg/gCg																																																																															
CIC	23152	MSKCC	GRCh37	19	42791229	42791229	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			325	134	388	1	ENST00000575354.2:c.293del	p.Pro98LeufsTer107	p.P98Lfs*107	ENST00000575354	NM_015125.3	97	Ccc/cc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244295	46244295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			113	48	393	0	ENST00000334344.6:c.2389C>A	p.Pro797Thr	p.P797T	ENST00000334344	NM_152641.2	797	Cca/Aca																																																																															
ACVR1	90	MSKCC	GRCh37	2	158637029	158637029	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			259	114	389	0	ENST00000263640.3:c.151C>T	p.Gln51Ter	p.Q51*	ENST00000263640	NM_001105.4	51	Cag/Tag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229442	36229442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			286	161	397	0	ENST00000222270.7:c.8132G>A	p.Arg2711His	p.R2711H	ENST00000222270	NM_014727.1	2711	cGt/cAt																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40364183	40364183	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			151	81	251	0	ENST00000293328.3:c.1499A>T	p.Asp500Val	p.D500V	ENST00000293328	NM_012448.3	500	gAc/gTc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755628	57755629	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0071580-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			376	171	369	0	ENST00000274289.3:c.158dup	p.Ala54GlyfsTer52	p.A54Gfs*52	ENST00000274289	NM_006622.3	53	ccg/ccCg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162741936	162741936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55973200		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	158	418	0	ENST00000367921.3:c.1627G>A	p.Val543Ile	p.V543I	ENST00000367921	NM_006182.2	543	Gtc/Atc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056293	27056293	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	198	463	0	ENST00000324856.7:c.1289A>G	p.Tyr430Cys	p.Y430C	ENST00000324856	NM_006015.4	430	tAc/tGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056334	27056334	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs541301347		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	189	420	0	ENST00000324856.7:c.1330G>A	p.Gly444Ser	p.G444S	ENST00000324856	NM_006015.4	444	Ggc/Agc																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599271	28599271	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1457528646		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	148	389	0	ENST00000253063.3:c.722del	p.Pro241GlnfsTer6	p.P241Qfs*6	ENST00000253063	NM_031459.4	239	agC/ag																																																																															
STK40	83931	MSKCC	GRCh37	1	36814313	36814313	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1343428672		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	140	416	0	ENST00000373129.3:c.727G>A	p.Asp243Asn	p.D243N	ENST00000373129	NM_032017.1	243	Gac/Aac																																																																															
STK40	83931	MSKCC	GRCh37	1	36820890	36820890	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753697977		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	131	440	2	ENST00000373129.3:c.487G>A	p.Val163Ile	p.V163I	ENST00000373129	NM_032017.1	163	Gtc/Atc																																																																															
STK40	83931	MSKCC	GRCh37	1	36824375	36824375	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs547574448		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	126	346	0	ENST00000373129.3:c.161C>T	p.Ala54Val	p.A54V	ENST00000373129	NM_032017.1	54	gCg/gTg																																																																															
MPL	4352	MSKCC	GRCh37	1	43804953	43804953	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	123	311	0	ENST00000372470.3:c.408del	p.Ser137ValfsTer29	p.S137Vfs*29	ENST00000372470	NM_005373.2	135	Ccc/cc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	332	367	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112764451	112764451	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	168	296	0	ENST00000369452.4:c.1063del	p.Ser355LeufsTer27	p.S355Lfs*27	ENST00000369452	NM_007373.3	354	Ttt/tt																																																																															
RET	5979	MSKCC	GRCh37	10	43617431	43617431	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	162	343	0	ENST00000355710.3:c.2772del	p.Phe924LeufsTer22	p.F924Lfs*22	ENST00000355710	NM_020975.4	923	cTt/ct																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106022	8106022	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	50	387	0	ENST00000346208.3:c.842A>G	p.His281Arg	p.H281R	ENST00000346208		281	cAc/cGc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307394	118307394	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	50	155	0	ENST00000534358.1:c.173del	p.Pro58ArgfsTer92	p.P58Rfs*92	ENST00000534358	NM_005933.3	56	tCc/tc																																																																															
POLE	5426	MSKCC	GRCh37	12	133209314	133209314	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs754630848		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	76	422	0	ENST00000320574.5:c.6072del	p.Val2025Ter	p.V2025*	ENST00000320574	NM_006231.2	2024	ccC/cc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	219	447	3	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	461475	461475	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs998253161		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	143	247	0	ENST00000399788.2:c.1045C>T	p.Arg349Ter	p.R349*	ENST00000399788	NM_001042603.1	349	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492628	56492628	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	82	412	0	ENST00000267101.3:c.2782del	p.Glu928SerfsTer16	p.E928Sfs*16	ENST00000267101	NM_001982.3	926	aaG/aa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639042	3639042	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200377191		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	56	387	0	ENST00000294008.3:c.4597G>A	p.Ala1533Thr	p.A1533T	ENST00000294008	NM_032444.2	1533	Gct/Act																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779211	3779211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783507		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	44	287	0	ENST00000262367.5:c.5837del	p.Pro1946HisfsTer30	p.P1946Hfs*30	ENST00000262367	NM_004380.2	1946	cCa/ca																																																																															
NUP93	9688	MSKCC	GRCh37	16	56875738	56875738	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147381896		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	139	356	0	ENST00000308159.5:c.2342G>A	p.Arg781His	p.R781H	ENST00000308159	NM_014669.4	781	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	140	414	1	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	156	388	0	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992138	72992138	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764598603		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	173	409	0	ENST00000268489.5:c.1907C>T	p.Ser636Leu	p.S636L	ENST00000268489	NM_006885.3	636	tCg/tTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348283	89348283	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781186923		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	85	488	1	ENST00000301030.4:c.4667C>T	p.Ala1556Val	p.A1556V	ENST00000301030	NM_001256183.1	1556	gCg/gTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89809275	89809275	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs545742908		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	201	407	0	ENST00000389301.3:c.3698C>T	p.Ala1233Val	p.A1233V	ENST00000389301	NM_000135.2	1233	gCg/gTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857370	9857370	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	209	392	0	ENST00000330684.3:c.4031T>C	p.Phe1344Ser	p.F1344S	ENST00000330684	NM_001134407.1	1344	tTc/tCc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858384	9858384	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200526162		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	84	421	0	ENST00000330684.3:c.3017C>T	p.Ala1006Val	p.A1006V	ENST00000330684	NM_001134407.1	1006	gCg/gTg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	123	364	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37884218	37884218	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	44	452	1	ENST00000269571.5:c.3694del	p.Ala1232LeufsTer70	p.A1232Lfs*70	ENST00000269571		1230	cGg/cg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453399	40453399	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs759027671		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	194	381	5	ENST00000345506.4:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000345506	NM_003152.3	366	Ccc/cc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	177	473	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437605	56437605	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1329721997		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	151	318	0	ENST00000407977.2:c.857G>A	p.Arg286Gln	p.R286Q	ENST00000407977		286	cGg/cAg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	160	361	0	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39584468	39584468	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1253032956		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	191	354	0	ENST00000262039.4:c.1133G>A	p.Arg378His	p.R378H	ENST00000262039	NM_002647.2	378	cGt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223707	36223707	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1468457510		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	185	492	0	ENST00000222270.7:c.6257C>T	p.Ser2086Leu	p.S2086L	ENST00000222270	NM_014727.1	2086	tCg/tTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223827	36223827	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	52	474	0	ENST00000222270.7:c.6377A>G	p.Asp2126Gly	p.D2126G	ENST00000222270	NM_014727.1	2126	gAt/gGt																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	40	433	1	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
CIC	23152	MSKCC	GRCh37	19	42793441	42793441	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769792673		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	118	453	1	ENST00000575354.2:c.1243C>T	p.Arg415Trp	p.R415W	ENST00000575354	NM_015125.3	415	Cgg/Tgg																																																																															
CIC	23152	MSKCC	GRCh37	19	42799098	42799098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	77	369	0	ENST00000575354.2:c.4586del	p.Pro1529LeufsTer91	p.P1529Lfs*91	ENST00000575354	NM_015125.3	1528	Ccc/cc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	143	388	0	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
ASXL2	55252	MSKCC	GRCh37	2	25972794	25972794	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761581753		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	164	344	1	ENST00000435504.4:c.1631C>T	p.Ala544Val	p.A544V	ENST00000435504		544	gCg/gTg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46583923	46583923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	148	297	0	ENST00000263734.3:c.430C>T	p.Arg144Cys	p.R144C	ENST00000263734	NM_001430.4	144	Cgt/Tgt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	128	450	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419930	41419930	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	170	407	0	ENST00000373198.4:c.391del	p.Gln131LysfsTer17	p.Q131Kfs*17	ENST00000373198	NM_133170.3	131	Caa/aa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851558	134851558	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs770155473		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	132	299	0	ENST00000398015.3:c.964G>A	p.Val322Ile	p.V322I	ENST00000398015	NM_004441.4	322	Gtc/Atc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	178	311	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
MST1	4485	MSKCC	GRCh37	3	49725042	49725042	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182179992		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	31	407	0	ENST00000449682.2:c.302C>T	p.Ser101Leu	p.S101L	ENST00000449682	NM_020998.3	101	tCg/tTg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933492	49933492	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56091918		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	176	479	0	ENST00000296474.3:c.2698G>A	p.Val900Met	p.V900M	ENST00000296474	NM_002447.2	900	Gtg/Atg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49935107	49935107	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370774556		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	154	440	0	ENST00000296474.3:c.1892G>A	p.Arg631Gln	p.R631Q	ENST00000296474	NM_002447.2	631	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	183	367	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874637	35874637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	145	305	2	ENST00000303115.3:c.799del	p.Arg267GlyfsTer28	p.R267Gfs*28	ENST00000303115	NM_002185.3	265	Aaa/aa																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225533	26225533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	236	541	0	ENST00000360408.1:c.151G>A	p.Glu51Lys	p.E51K	ENST00000360408	NM_003532.2	51	Gag/Aag																																																																															
IRF4	3662	MSKCC	GRCh37	6	401492	401492	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752393433		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	123	409	0	ENST00000380956.4:c.814G>A	p.Glu272Lys	p.E272K	ENST00000380956	NM_001195286.1	272	Gag/Aag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979210	93979210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	157	328	1	ENST00000369303.4:c.1618G>T	p.Gly540Cys	p.G540C	ENST00000369303	NM_004440.3	540	Ggt/Tgt																																																																															
SMO	6608	MSKCC	GRCh37	7	128829075	128829075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1247591045		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	153	278	0	ENST00000249373.3:c.88del	p.Ala30ArgfsTer25	p.A30Rfs*25	ENST00000249373	NM_005631.4	28	cGg/cg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468038	50468038	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1459868445		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	290	411	0	ENST00000331340.3:c.1273G>A	p.Gly425Arg	p.G425R	ENST00000331340	NM_006060.4	425	Ggg/Agg																																																																															
NBN	4683	MSKCC	GRCh37	8	90993676	90993676	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	161	264	0	ENST00000265433.3:c.247del	p.Met83CysfsTer9	p.M83Cfs*9	ENST00000265433	NM_002485.4	83	Atg/tg																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006054	22006054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	144	383	0	ENST00000276925.6:c.349G>A	p.Val117Met	p.V117M	ENST00000276925	NM_004936.3	117	Gtg/Atg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486232	8486232	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142397137		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	347	406	0	ENST00000356435.5:c.2585G>A	p.Arg862His	p.R862H	ENST00000356435		862	cGc/cAc																																																																															
AR	367	MSKCC	GRCh37	X	66766357	66766362	+	inframe_deletion	In_Frame_Del	DEL	GGCGGC	GGCGGC	-	rs1270862027		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	31	85	0	ENST00000374690.3:c.1415_1420del	p.Gly472_Gly473del	p.G472_G473del	ENST00000374690	NM_000044.3	457	GGCGGC/-																																																																															
MAD2L2	10459	MSKCC	GRCh37	1	11734852	11734852	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142776270		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	103	219	0	ENST00000235310.3:c.616C>T	p.Arg206Cys	p.R206C	ENST00000235310		206	Cgc/Tgc																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117695904	117695904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	151	353	0	ENST00000369458.3:c.533C>T	p.Thr178Ile	p.T178I	ENST00000369458	NM_024626.3	178	aCa/aTa																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150933138	150933140	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	153	357	0	ENST00000271640.5:c.2603_2605del	p.Glu868del	p.E868del	ENST00000271640	NM_001145415.1	867	aAAGaa/aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106966	27106966	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766452447		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	179	424	0	ENST00000324856.7:c.6577G>A	p.Gly2193Ser	p.G2193S	ENST00000324856	NM_006015.4	2193	Ggc/Agc																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363565	40363565	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1376071268		P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	209	426	0	ENST00000397332.2:c.664C>T	p.Arg222Ter	p.R222*	ENST00000397332	NM_001033082.2	222	Cga/Tga																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981646	101981646	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	130	307	0	ENST00000282441.5:c.71del	p.Pro24ArgfsTer50	p.P24Rfs*50	ENST00000282441	NM_001130145.2	23	Ccc/cc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374114	118374114	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	180	425	0	ENST00000534358.1:c.7507G>T	p.Ala2503Ser	p.A2503S	ENST00000534358	NM_005933.3	2503	Gct/Tct																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118392819	118392819	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	175	404	0	ENST00000534358.1:c.11851A>G	p.Ile3951Val	p.I3951V	ENST00000534358	NM_005933.3	3951	Att/Gtt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	431654	431654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	152	310	0	ENST00000399788.2:c.2355G>T	p.Arg785Ser	p.R785S	ENST00000399788	NM_001042603.1	785	agG/agT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444443	49444443	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	150	455	0	ENST00000301067.7:c.2928del	p.Ile977SerfsTer23	p.I977Sfs*23	ENST00000301067	NM_003482.3	976	ccC/cc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435424	110435424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	155	411	0	ENST00000375856.3:c.2977G>A	p.Ala993Thr	p.A993T	ENST00000375856	NM_003749.2	993	Gcc/Acc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646677	23646677	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	78	335	0	ENST00000261584.4:c.1190del	p.Thr397LysfsTer27	p.T397Kfs*27	ENST00000261584	NM_024675.3	397	aCa/aa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786670	3786670	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	37	370	0	ENST00000262367.5:c.4541G>A	p.Arg1514Gln	p.R1514Q	ENST00000262367	NM_004380.2	1514	cGg/cAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789639	3789639	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	269	360	0	ENST00000262367.5:c.4220T>C	p.Val1407Ala	p.V1407A	ENST00000262367	NM_004380.2	1407	gTc/gCc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645006	67645006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	166	453	0	ENST00000264010.4:c.271G>A	p.Asp91Asn	p.D91N	ENST00000264010	NM_006565.3	91	Gac/Aac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16042373	16042373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	141	260	0	ENST00000268712.3:c.1301G>A	p.Arg434Lys	p.R434K	ENST00000268712	NM_006311.3	434	aGg/aAg																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38793754	38793754	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	150	330	0	ENST00000348513.6:c.227A>G	p.Tyr76Cys	p.Y76C	ENST00000348513	NM_003079.4	76	tAc/tGc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250933	10250933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	127	320	0	ENST00000340748.4:c.3547G>A	p.Gly1183Ser	p.G1183S	ENST00000340748		1183	Ggc/Agc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47425386	47425386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	183	392	0	ENST00000404338.3:c.3454G>A	p.Val1152Met	p.V1152M	ENST00000404338	NM_004491.4	1152	Gtg/Atg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212576793	212576793	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	120	286	0	ENST00000342788.4:c.1106T>C	p.Leu369Pro	p.L369P	ENST00000342788	NM_005235.2	369	cTa/cCa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1955189	1955189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	31	351	0	ENST00000382895.3:c.2276G>A	p.Cys759Tyr	p.C759Y	ENST00000382895	NM_133330.2	759	tGc/tAc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500453	149500453	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	133	338	0	ENST00000261799.4:c.2584A>C	p.Ser862Arg	p.S862R	ENST00000261799	NM_002609.3	862	Agc/Cgc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515228	149515228	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	142	470	0	ENST00000261799.4:c.254T>C	p.Leu85Pro	p.L85P	ENST00000261799	NM_002609.3	85	cTc/cCc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526538	31526538	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	145	299	0	ENST00000344624.3:c.502T>C	p.Tyr168His	p.Y168H	ENST00000344624		168	Tac/Cac																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179466	56179466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	177	336	0	ENST00000399503.3:c.3779C>T	p.Ala1260Val	p.A1260V	ENST00000399503	NM_005921.1	1260	gCt/gTt																																																																															
MSH3	4437	MSKCC	GRCh37	5	80040337	80040337	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	113	200	0	ENST00000265081.6:c.1666A>G	p.Thr556Ala	p.T556A	ENST00000265081	NM_002439.4	556	Acc/Gcc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38139061	38139063	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			804	160	311	0	ENST00000317025.8:c.3540_3542del	p.Asp1180del	p.D1180del	ENST00000317025	NM_023034.1	1180	gaTGAa/gaa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370891	55370891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	123	345	0	ENST00000297316.4:c.193G>A	p.Glu65Lys	p.E65K	ENST00000297316	NM_022454.3	65	Gag/Aag																																																																															
JAK2	3717	MSKCC	GRCh37	9	5089854	5089854	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	181	295	0	ENST00000381652.3:c.2752T>C	p.Tyr918His	p.Y918H	ENST00000381652	NM_004972.3	918	Tac/Cac																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87366956	87366956	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	393	289	0	ENST00000277120.3:c.1352T>G	p.Leu451Arg	p.L451R	ENST00000277120		451	cTg/cGg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270543	98270543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	133	236	0	ENST00000331920.6:c.101G>T	p.Arg34Ile	p.R34I	ENST00000331920	NM_000264.3	34	aGa/aTa																																																																															
XIAP	331	MSKCC	GRCh37	X	123025131	123025131	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	328	279	0	ENST00000355640.3:c.1021A>G	p.Asn341Asp	p.N341D	ENST00000355640		341	Aat/Gat																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223418	53223418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	135	168	0	ENST00000375401.3:c.3941G>A	p.Arg1314Gln	p.R1314Q	ENST00000375401	NM_004187.3	1314	cGg/cAg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0073863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	13	303	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
AKT1	207	MSKCC	GRCh37	14	105243043	105243043	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	18	349	0	ENST00000349310.3:c.240G>T	p.Trp80Cys	p.W80C	ENST00000349310	NM_001014432.1	80	tgG/tgT																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302810	15302810	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0073863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	24	479	0	ENST00000263388.2:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000263388	NM_000435.2	214	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092986	27092986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	197	384	0	ENST00000324856.7:c.2917G>A	p.Val973Ile	p.V973I	ENST00000324856	NM_006015.4	973	Gta/Ata																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679744	30679744	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1260	271	422	0	ENST00000376406.3:c.1975A>G	p.Thr659Ala	p.T659A	ENST00000376406	NM_014641.2	659	Acc/Gcc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812260	212812260	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751175543		P-0073866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	165	307	0	ENST00000342788.4:c.316C>T	p.Arg106Cys	p.R106C	ENST00000342788	NM_005235.2	106	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	566	386	0	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct																																																																															
BAP1	8314	MSKCC	GRCh37	3	52438566	52438566	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0073866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	595	342	0	ENST00000460680.1:c.1153C>T	p.Arg385Ter	p.R385*	ENST00000460680	NM_004656.3	385	Cga/Tga																																																																															
TET2	54790	MSKCC	GRCh37	4	106197303	106197303	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	282	320	0	ENST00000380013.4:c.5636A>C	p.Glu1879Ala	p.E1879A	ENST00000380013	NM_001127208.2	1879	gAg/gCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432623	49432623	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0073866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	206	381	0	ENST00000301067.7:c.8516C>G	p.Ser2839Ter	p.S2839*	ENST00000301067	NM_003482.3	2839	tCa/tGa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670468	134670469	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0073866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	242	362	0	ENST00000398015.3:c.379_380delinsAA	p.Ala127Asn	p.A127N	ENST00000398015	NM_004441.4	127	GCc/AAc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942044	17942044	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	74	253	0	ENST00000458235.1:c.2971A>G	p.Ile991Val	p.I991V	ENST00000458235	NM_000215.3	991	Att/Gtt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156841475	156841475	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1151	151	379	0	ENST00000524377.1:c.778A>T	p.Arg260Trp	p.R260W	ENST00000524377	NM_002529.3	260	Agg/Tgg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028665	12028665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	233	290	0	ENST00000353533.5:c.868G>A	p.Val290Ile	p.V290I	ENST00000353533	NM_003010.3	290	Gtc/Atc																																																																															
CDK6	1021	MSKCC	GRCh37	7	92300820	92300820	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			875	49	319	0	ENST00000265734.4:c.567A>C	p.Glu189Asp	p.E189D	ENST00000265734	NM_001259.6	189	gaA/gaC																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097818	8097818	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0073866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	232	365	1	ENST00000346208.3:c.200C>A	p.Ser67Ter	p.S67*	ENST00000346208		67	tCg/tAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8338926	8338926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	424	310	0	ENST00000356435.5:c.5375C>T	p.Ala1792Val	p.A1792V	ENST00000356435		1792	gCc/gTc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93955112	93955114	+	inframe_deletion	In_Frame_Del	DEL	CCA	CCA	-			P-0073866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	80	278	0	ENST00000369303.4:c.2784_2786del	p.Gly929del	p.G929del	ENST00000369303	NM_004440.3	928	gtTGGa/gta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0073867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	90	219	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849036	156849036	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	73	421	0	ENST00000524377.1:c.1928G>T	p.Gly643Val	p.G643V	ENST00000524377	NM_002529.3	643	gGt/gTt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46242723	46242845	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAACATCAACTGGATTTTATAAATGTCTTAGGTAGGATCCATAGTTCTTTAAATAAAGTCCATTTACGTCACTTACAACATCTCTTGCTCTTTAAAGAAAATACCAAATATCTTATCTAGTTT	TAACATCAACTGGATTTTATAAATGTCTTAGGTAGGATCCATAGTTCTTTAAATAAAGTCCATTTACGTCACTTACAACATCTCTTGCTCTTTAAAGAAAATACCAAATATCTTATCTAGTTT	-			P-0073867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	51	243	0	ENST00000334344.6:c.1688_1715+95del		p.X563_splice	ENST00000334344	NM_152641.2	563																																																																																
DICER1	23405	MSKCC	GRCh37	14	95562200	95562200	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	106	366	0	ENST00000343455.3:c.5057C>A	p.Ala1686Asp	p.A1686D	ENST00000343455	NM_177438.2	1686	gCt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578383	7578403	+	inframe_deletion	In_Frame_Del	DEL	AGCAGCGCTCATGGTGGGGGC	AGCAGCGCTCATGGTGGGGGC	-			P-0073867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	112	456	0	ENST00000269305.4:c.527_547del	p.Cys176_Cys182del	p.C176_C182del	ENST00000269305	NM_001126112.2	176	tGCCCCCACCATGAGCGCTGCTca/tca																																																																															
ALK	238	MSKCC	GRCh37	2	30143168	30143168	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	52	452	0	ENST00000389048.3:c.358G>C	p.Ala120Pro	p.A120P	ENST00000389048	NM_004304.4	120	Gcc/Ccc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250250	110250250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	51	418	0	ENST00000374672.4:c.425C>T	p.Ala142Val	p.A142V	ENST00000374672	NM_004235.4	142	gCc/gTc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0028682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	618	356	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256846	16256846	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	305	356	0	ENST00000375759.3:c.4111C>T	p.Arg1371Ter	p.R1371*	ENST00000375759	NM_015001.2	1371	Cga/Tga																																																																															
CDH1	999	MSKCC	GRCh37	16	68842668	68842669	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	271	346	0	ENST00000261769.5:c.606dup	p.Gly203TrpfsTer6	p.G203Wfs*6	ENST00000261769	NM_004360.3	202	gtt/gTtt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457247	67457247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			784	204	459	0	ENST00000327367.4:c.221G>A	p.Arg74Gln	p.R74Q	ENST00000327367	NM_005902.3	74	cGg/cAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266562	41266562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	320	323	0	ENST00000349496.5:c.359C>T	p.Thr120Ile	p.T120I	ENST00000349496	NM_001904.3	120	aCt/aTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274911	41274911	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs868651538		P-0064608-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			261	106	434	0	ENST00000349496.5:c.1161T>A	p.Asn387Lys	p.N387K	ENST00000349496	NM_001904.3	387	aaT/aaA																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741646	145741646	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757320755		P-0064608-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			299	113	477	0	ENST00000428558.2:c.857C>T	p.Ser286Leu	p.S286L	ENST00000428558	NM_004260.3	286	tCg/tTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367969	15367969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759001252		P-0064608-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			316	123	371	0	ENST00000263377.2:c.1357C>T	p.Arg453Cys	p.R453C	ENST00000263377	NM_058243.2	453	Cgc/Tgc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456596	32456596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064608-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			130	15	284	0	ENST00000332351.3:c.296C>T	p.Ala99Val	p.A99V	ENST00000332351	NM_024426.4	99	gCg/gTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76763978	76763978	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0064608-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			426	26	449	0	ENST00000373344.5:c.7330T>G	p.Leu2444Val	p.L2444V	ENST00000373344	NM_000489.3	2444	Ttg/Gtg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151843822	151843822	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0064608-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			182	118	325	0	ENST00000262189.6:c.13895-2A>G		p.X4632_splice	ENST00000262189	NM_170606.2	4632																																																																																
SMARCA2	6595	MSKCC	GRCh37	9	2039842	2039856	+	inframe_deletion	In_Frame_Del	DEL	GCAACCACAGACGCA	GCAACCACAGACGCA	-			P-0064608-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			335	190	595	0	ENST00000349721.2:c.737_751del	p.Pro246_Gln250del	p.P246_Q250del	ENST00000349721	NM_003070.3	244	ccGCAACCACAGACGCAg/ccg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443841	49443841	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064608-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			370	134	535	0	ENST00000301067.7:c.3530G>C	p.Gly1177Ala	p.G1177A	ENST00000301067	NM_003482.3	1177	gGg/gCg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981483	201981484	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTGATGAGCTCAGTTGGATC			P-0064608-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			358	73	409	0	ENST00000359651.3:c.398_417dup	p.Ile140LeufsTer22	p.I140Lfs*22	ENST00000359651		133	tct/tCTGATGAGCTCAGTTGGATCct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0071763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	135	362	0	ENST00000269305.4:c.400T>G	p.Phe134Val	p.F134V	ENST00000269305	NM_001126112.2	134	Ttt/Gtt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953259	81953259	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756480279		P-0071763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	90	313	0	ENST00000359376.3:c.2225G>A	p.Arg742His	p.R742H	ENST00000359376	NM_002661.3	742	cGc/cAc																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944812	31944812	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866971809		P-0071763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	97	283	0	ENST00000340398.3:c.289G>A	p.Glu97Lys	p.E97K	ENST00000340398	NM_001013699.2	97	Gaa/Aaa																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858321	27858323	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0071763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	209	457	0	ENST00000359303.2:c.248_250del	p.Leu83del	p.L83del	ENST00000359303	NM_003535.2	83	cTTCgt/cgt																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446543	29446543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	66	325	0	ENST00000544604.2:c.2374G>A	p.Gly792Arg	p.G792R	ENST00000544604	NM_001206998.1	792	Gga/Aga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071937-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	80	252	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587782289		P-0071937-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	71	364	1	ENST00000269305.4:c.706T>C	p.Tyr236His	p.Y236H	ENST00000269305	NM_001126112.2	236	Tac/Cac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492743	56492743	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0071937-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			464	84	403	0	ENST00000407977.2:c.196G>T	p.Glu66Ter	p.E66*	ENST00000407977		66	Gaa/Taa																																																																															
AKT2	208	MSKCC	GRCh37	19	40761072	40761072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071937-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			349	33	316	0	ENST00000392038.2:c.280G>A	p.Asp94Asn	p.D94N	ENST00000392038	NM_001626.4	94	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0073110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	12	275	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448408	49448408	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs797045661		P-0073110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	26	502	0	ENST00000301067.7:c.303del	p.Ser102AlafsTer28	p.S102Afs*28	ENST00000301067	NM_003482.3	101	ggG/gg																																																																															
MSI1	4440	MSKCC	GRCh37	12	120784077	120784077	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1210006090		P-0073110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	27	603	1	ENST00000257552.2:c.908G>A	p.Arg303His	p.R303H	ENST00000257552	NM_002442.3	303	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0073110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	45	444	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198281487	198281488	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATC			P-0073110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	36	406	0	ENST00000335508.6:c.643_644insGAT	p.Lys214_Leu215insArg	p.K214_L215insR	ENST00000335508	NM_012433.2	215	cta/cGATta																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs371769427		P-0073110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	33	323	0	ENST00000291552.4:c.101C>A	p.Ser34Tyr	p.S34Y	ENST00000291552	NM_006758.2	34	tCt/tAt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067386	37067386	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	26	498	0	ENST00000231790.2:c.1297G>T	p.Glu433Ter	p.E433*	ENST00000231790	NM_000249.3	433	Gaa/Taa																																																																															
REST	5978	MSKCC	GRCh37	4	57796750	57796750	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1199978831		P-0073110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	36	485	0	ENST00000309042.7:c.1732del	p.Ser578ValfsTer7	p.S578Vfs*7	ENST00000309042	NM_005612.4	576	Aaa/aa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630605	187630605	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	28	454	0	ENST00000441802.2:c.377del	p.Asn126IlefsTer20	p.N126Ifs*20	ENST00000441802	NM_005245.3	126	aAt/at																																																																															
FYN	2534	MSKCC	GRCh37	6	112020774	112020774	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777800541		P-0073110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	38	428	0	ENST00000368678.4:c.797G>A	p.Arg266His	p.R266H	ENST00000368678		266	cGt/cAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0073110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	46	574	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088703	27088704	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0073110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	37	492	0	ENST00000324856.7:c.2313_2314insAA	p.Ser772AsnfsTer62	p.S772Nfs*62	ENST00000324856	NM_006015.4	771	tta/ttAAa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465374	120465374	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	38	513	0	ENST00000256646.2:c.4887C>G	p.Asn1629Lys	p.N1629K	ENST00000256646	NM_024408.3	1629	aaC/aaG																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214026	36214026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	37	607	0	ENST00000222270.7:c.2852G>A	p.Arg951His	p.R951H	ENST00000222270	NM_014727.1	951	cGc/cAc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47693901	47693901	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	30	297	0	ENST00000233146.2:c.1615T>G	p.Phe539Val	p.F539V	ENST00000233146	NM_000251.2	539	Ttt/Gtt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524313	176524313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	35	577	0	ENST00000292408.4:c.2174G>A	p.Cys725Tyr	p.C725Y	ENST00000292408	NM_213647.1	725	tGc/tAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509429	106509429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	32	515	0	ENST00000359195.3:c.1423C>A	p.Leu475Met	p.L475M	ENST00000359195	NM_002649.2	475	Ctg/Atg																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345935	152345935	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	29	452	0	ENST00000359321.1:c.635C>A	p.Ala212Asp	p.A212D	ENST00000359321	NM_005431.1	212	gCc/gAc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570271	87570271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	47	508	0	ENST00000277120.3:c.2011C>T	p.His671Tyr	p.H671Y	ENST00000277120		671	Cat/Tat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	64	521	2	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121242	29121242	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137853007		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	77	419	0	ENST00000328354.6:c.433C>T	p.Arg145Trp	p.R145W	ENST00000328354	NM_007194.3	145	Cgg/Tgg																																																																															
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	55	596	3	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	48	472	1	ENST00000349496.5:c.1982G>A	p.Arg661Gln	p.R661Q	ENST00000349496	NM_001904.3	661	cGa/cAa																																																																															
CCND2	894	MSKCC	GRCh37	12	4409117	4409117	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776036883		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	53	435	0	ENST00000261254.3:c.812C>T	p.Ser271Leu	p.S271L	ENST00000261254	NM_001759.3	271	tCg/tTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272408	15272408	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142007575		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	53	535	0	ENST00000263388.2:c.6031G>A	p.Val2011Ile	p.V2011I	ENST00000263388	NM_000435.2	2011	Gta/Ata																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98244261	98244261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	44	368	0	ENST00000331920.6:c.716C>T	p.Ala239Val	p.A239V	ENST00000331920	NM_000264.3	239	gCg/gTg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	50	537	2	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	42	494	1	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136270	2136270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1371745883		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	32	540	0	ENST00000219476.3:c.4739G>A	p.Arg1580Gln	p.R1580Q	ENST00000219476	NM_000548.3	1580	cGg/cAg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	34	645	4	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																															
ARAF	369	MSKCC	GRCh37	X	47430771	47430771	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764281834		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	51	255	0	ENST00000377045.4:c.1736G>A	p.Arg579Gln	p.R579Q	ENST00000377045	NM_001654.4	579	cGg/cAg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029218	14029218	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41557814		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			794	58	505	0	ENST00000311895.7:c.1429C>T	p.Arg477Trp	p.R477W	ENST00000311895	NM_005236.2	477	Cgg/Tgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914478	32914478	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80358833		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	55	416	0	ENST00000380152.3:c.5986G>A	p.Ala1996Thr	p.A1996T	ENST00000380152		1996	Gca/Aca																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346158	89346158	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	49	579	2	ENST00000301030.4:c.6792del	p.Ala2265ProfsTer72	p.A2265Pfs*72	ENST00000301030	NM_001256183.1	2264	ccC/cc																																																																															
CASP8	841	MSKCC	GRCh37	2	202149799	202149799	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			688	38	547	0	ENST00000358485.4:c.1245del	p.Phe415LeufsTer26	p.F415Lfs*26	ENST00000358485	NM_001080125.1	414	Ttt/tt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286237	66286238	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	30	385	0	ENST00000273854.3:c.1448dup	p.Asn483LysfsTer21	p.N483Kfs*21	ENST00000273854	NM_004439.5	483	aac/aaAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47143009	47143010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	39	263	0	ENST00000409792.3:c.4953dup	p.Thr1652TyrfsTer14	p.T1652Yfs*14	ENST00000409792	NM_014159.6	1651	-/T																																																																															
EGFR	1956	MSKCC	GRCh37	7	55233024	55233024	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144943614		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	44	421	0	ENST00000275493.2:c.1774G>A	p.Val592Ile	p.V592I	ENST00000275493	NM_005228.3	592	Gtc/Atc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944562	40944562	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868189942		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	46	386	0	ENST00000373198.4:c.1940C>T	p.Ser647Leu	p.S647L	ENST00000373198	NM_133170.3	647	tCg/tTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16042433	16042433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	34	294	0	ENST00000268712.3:c.1241G>A	p.Arg414Gln	p.R414Q	ENST00000268712	NM_006311.3	414	cGa/cAa																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88677065	88677065	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765530074		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	22	262	0	ENST00000372037.3:c.850C>T	p.Arg284Cys	p.R284C	ENST00000372037	NM_004329.2	284	Cgc/Tgc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	103	363	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	38	526	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991703	72991703	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201821212		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	49	576	0	ENST00000268489.5:c.2342C>T	p.Ala781Val	p.A781V	ENST00000268489	NM_006885.3	781	gCg/gTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717712	89717712	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782350		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	24	303	0	ENST00000371953.3:c.737C>T	p.Pro246Leu	p.P246L	ENST00000371953	NM_000314.4	246	cCg/cTg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141551412	141551412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	45	451	0	ENST00000220592.5:c.1885G>A	p.Val629Met	p.V629M	ENST00000220592	NM_012154.3	629	Gtg/Atg																																																																															
TET2	54790	MSKCC	GRCh37	4	106156811	106156811	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146049881		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	47	493	1	ENST00000380013.4:c.1712G>A	p.Arg571His	p.R571H	ENST00000380013	NM_001127208.2	571	cGt/cAt																																																																															
MSH3	4437	MSKCC	GRCh37	5	80088585	80088585	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	39	346	0	ENST00000265081.6:c.2582del	p.Asn861MetfsTer6	p.N861Mfs*6	ENST00000265081	NM_002439.4	859	atA/at																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100619	8100619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	33	577	0	ENST00000346208.3:c.593C>T	p.Ser198Leu	p.S198L	ENST00000346208		198	tCg/tTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032377	10032377	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1348316426		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	34	445	0	ENST00000330684.3:c.446C>T	p.Ala149Val	p.A149V	ENST00000330684	NM_001134407.1	149	gCg/gTg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781306	9781306	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs754072203		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	45	389	0	ENST00000377346.4:c.1811C>T	p.Thr604Met	p.T604M	ENST00000377346	NM_005026.3	604	aCg/aTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42003509	42003509	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	40	372	0	ENST00000219905.7:c.3046C>T	p.Arg1016Ter	p.R1016*	ENST00000219905	NM_001164273.1	1016	Cga/Tga																																																																															
TCF3	6929	MSKCC	GRCh37	19	1623996	1623996	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748050498		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	38	323	0	ENST00000344749.5:c.503C>T	p.Thr168Met	p.T168M	ENST00000344749	NM_001136139.2	168	aCg/aTg																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732390	74732395	+	inframe_deletion	In_Frame_Del	DEL	GGACTT	GGACTT	-	rs779523734		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	41	576	0	ENST00000359995.5:c.514_519del	p.Lys172_Ser173del	p.K172_S173del	ENST00000359995	NM_001195427.1	172	AAGTCC/-																																																																															
STK40	83931	MSKCC	GRCh37	1	36807564	36807564	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202225847		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	37	460	0	ENST00000373129.3:c.1100C>T	p.Thr367Met	p.T367M	ENST00000373129	NM_032017.1	367	aCg/aTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518693	103518693	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142438319		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	54	338	0	ENST00000355739.4:c.2281G>A	p.Ala761Thr	p.A761T	ENST00000355739	NM_000123.3	761	Gct/Act																																																																															
RAD50	10111	MSKCC	GRCh37	5	131926947	131926947	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060501967		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	34	277	0	ENST00000265335.6:c.1484G>A	p.Ser495Asn	p.S495N	ENST00000265335		495	aGc/aAc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641778	23641778	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144617793		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	41	301	0	ENST00000261584.4:c.1697G>A	p.Arg566His	p.R566H	ENST00000261584	NM_024675.3	566	cGt/cAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492756	56492757	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	51	512	0	ENST00000407977.2:c.182_183del	p.Leu61GlnfsTer13	p.L61Qfs*13	ENST00000407977		61	cTG/c																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916857	178916857	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	47	363	0	ENST00000263967.3:c.249del	p.Phe83LeufsTer17	p.F83Lfs*17	ENST00000263967	NM_006218.2	82	Ttt/tt																																																																															
TERT	7015	MSKCC	GRCh37	5	1260675	1260675	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144697790		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	56	484	0	ENST00000310581.5:c.2884C>T	p.Arg962Cys	p.R962C	ENST00000310581	NM_198253.2	962	Cgc/Tgc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534429	63534429	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	46	512	0	ENST00000307078.5:c.1092del	p.Val365TrpfsTer10	p.V365Wfs*10	ENST00000307078	NM_004655.3	364	ccC/cc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465391	99465391	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912429		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	36	399	0	ENST00000268035.6:c.2216G>A	p.Arg739Gln	p.R739Q	ENST00000268035	NM_000875.3	739	cGg/cAg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348025	348025	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767214854		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	31	644	0	ENST00000262320.3:c.1481C>T	p.Pro494Leu	p.P494L	ENST00000262320	NM_003502.3	494	cCg/cTg																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	47	545	1	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11136143	11136143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	43	393	0	ENST00000344626.4:c.3127C>T	p.Arg1043Trp	p.R1043W	ENST00000344626	NM_003072.3	1043	Cgg/Tgg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206903	162206903	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756064095		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	51	476	0	ENST00000366898.1:c.772G>A	p.Val258Met	p.V258M	ENST00000366898	NM_004562.2	258	Gtg/Atg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375466	15375466	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777186961		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	47	561	0	ENST00000263377.2:c.961C>T	p.Arg321Trp	p.R321W	ENST00000263377	NM_058243.2	321	Cgg/Tgg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445999	29445999	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	30	434	0	ENST00000544604.2:c.1835del	p.Gly612AlafsTer54	p.G612Afs*54	ENST00000544604	NM_001206998.1	610	gcG/gc																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428251	33428251	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150134822		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	35	432	0	ENST00000335858.7:c.536G>A	p.Arg179His	p.R179H	ENST00000335858	NM_133629.2	179	cGc/cAc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206647726	206647726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781921697		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	48	458	0	ENST00000367120.3:c.140G>A	p.Arg47Gln	p.R47Q	ENST00000367120	NM_014002.3	47	cGg/cAg																																																																															
MAX	4149	MSKCC	GRCh37	14	65544693	65544693	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	54	488	1	ENST00000358664.4:c.233del	p.Asn78ThrfsTer92	p.N78Tfs*92	ENST00000358664	NM_002382.4	78	aAc/ac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913523	32913523	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	54	428	0	ENST00000380152.3:c.5035del	p.Thr1679LeufsTer3	p.T1679Lfs*3	ENST00000380152		1677	agA/ag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554549	63554549	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	61	563	0	ENST00000307078.5:c.190del	p.Glu64SerfsTer12	p.E64Sfs*12	ENST00000307078	NM_004655.3	64	Gag/ag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426655	49426655	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			890	69	655	0	ENST00000301067.7:c.11833C>T	p.Gln3945Ter	p.Q3945*	ENST00000301067	NM_003482.3	3945	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822468	72822468	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1205143933		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			702	59	643	0	ENST00000268489.5:c.9707A>G	p.Asp3236Gly	p.D3236G	ENST00000268489	NM_006885.3	3236	gAc/gGc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712558	43712558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	44	469	0	ENST00000382044.4:c.4626del	p.Ile1543SerfsTer7	p.I1543Sfs*7	ENST00000382044	NM_001141980.1	1542	ccC/cc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47656890	47656890	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	34	272	0	ENST00000233146.2:c.1086del	p.Val363TrpfsTer5	p.V363Wfs*5	ENST00000233146	NM_000251.2	362	ttA/tt																																																																															
MED12	9968	MSKCC	GRCh37	X	70341248	70341248	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	41	264	0	ENST00000374080.3:c.807G>T	p.Glu269Asp	p.E269D	ENST00000374080		269	gaG/gaT																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646337	3646337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	32	486	2	ENST00000294008.3:c.1741G>A	p.Glu581Lys	p.E581K	ENST00000294008	NM_032444.2	581	Gag/Aag																																																																															
EZH1	2145	MSKCC	GRCh37	17	40865295	40865295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	44	426	0	ENST00000428826.2:c.1136C>T	p.Ala379Val	p.A379V	ENST00000428826		379	gCt/gTt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465435	99465435	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	40	466	0	ENST00000268035.6:c.2260A>C	p.Ser754Arg	p.S754R	ENST00000268035	NM_000875.3	754	Agc/Cgc																																																																															
CASP8	841	MSKCC	GRCh37	2	202149657	202149657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	37	516	0	ENST00000358485.4:c.1098G>A	p.Met366Ile	p.M366I	ENST00000358485	NM_001080125.1	366	atG/atA																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437639	52437639	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs951076425		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	51	493	0	ENST00000460680.1:c.1522C>T	p.Arg508Cys	p.R508C	ENST00000460680	NM_004656.3	508	Cgc/Tgc																																																																															
PARK2	5071	MSKCC	GRCh37	6	161771166	161771166	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1490851246		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	42	362	0	ENST00000366898.1:c.1363C>T	p.Arg455Cys	p.R455C	ENST00000366898	NM_004562.2	455	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223968	36223968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			688	43	680	0	ENST00000222270.7:c.6518G>A	p.Arg2173Gln	p.R2173Q	ENST00000222270	NM_014727.1	2173	cGg/cAg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52582125	52582125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	41	402	0	ENST00000394830.3:c.4703G>A	p.Arg1568Gln	p.R1568Q	ENST00000394830	NM_018313.4	1568	cGg/cAg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248690	212248690	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	39	491	0	ENST00000342788.4:c.3577A>G	p.Asn1193Asp	p.N1193D	ENST00000342788	NM_005235.2	1193	Aat/Gat																																																																															
ATR	545	MSKCC	GRCh37	3	142281208	142281208	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	47	398	0	ENST00000350721.4:c.1036T>A	p.Leu346Met	p.L346M	ENST00000350721	NM_001184.3	346	Ttg/Atg																																																																															
CTR9	9646	MSKCC	GRCh37	11	10786100	10786100	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	41	409	1	ENST00000361367.2:c.1424del	p.Leu475TrpfsTer63	p.L475Wfs*63	ENST00000361367	NM_014633.3	473	taT/ta																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5240304	5240304	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs542381323		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	31	424	0	ENST00000357368.4:c.1610C>T	p.Ser537Leu	p.S537L	ENST00000357368	NM_002850.3	537	tCg/tTg																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544641	86544641	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	33	512	0	ENST00000262426.4:c.466A>G	p.Ser156Gly	p.S156G	ENST00000262426	NM_001451.2	156	Agc/Ggc																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36651975	36651975	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376481017		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	53	535	0	ENST00000244741.5:c.97G>A	p.Asp33Asn	p.D33N	ENST00000244741	NM_000389.4	33	Gac/Aac																																																																															
CARM1	10498	MSKCC	GRCh37	19	11032057	11032057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	35	580	0	ENST00000327064.4:c.1622C>T	p.Thr541Met	p.T541M	ENST00000327064	NM_199141.1	541	aCg/aTg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782408	9782408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	26	423	1	ENST00000377346.4:c.2341G>A	p.Gly781Arg	p.G781R	ENST00000377346	NM_005026.3	781	Ggg/Agg																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045678	26045678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	50	530	0	ENST00000540144.1:c.40G>A	p.Gly14Ser	p.G14S	ENST00000540144	NM_003531.2	14	Ggc/Agc																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80537192	80537192	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	19	213	0	ENST00000286548.4:c.206A>G	p.Asp69Gly	p.D69G	ENST00000286548	NM_002072.3	69	gAt/gGt																																																																															
REST	5978	MSKCC	GRCh37	4	57786024	57786024	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1468725438		P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	39	280	0	ENST00000309042.7:c.970C>T	p.Arg324Cys	p.R324C	ENST00000309042	NM_005612.4	324	Cgt/Tgt																																																																															
KIT	3815	MSKCC	GRCh37	4	55594221	55594222	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0073741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	42	344	0	ENST00000288135.5:c.1925_1926del	p.Lys642SerfsTer7	p.K642Sfs*7	ENST00000288135	NM_000222.2	642	AAa/a																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0073742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	96	196	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287520	33287520	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	191	479	0	ENST00000374542.5:c.1577G>T	p.Arg526Leu	p.R526L	ENST00000374542	NM_001141970.1	526	cGc/cTc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0073758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	156	386	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46256733	46256733	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs200197392		P-0073758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	161	244	0	ENST00000371998.3:c.789C>A	p.Asn263Lys	p.N263K	ENST00000371998		263	aaC/aaA																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71064779	71064779	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	216	269	0	ENST00000318789.4:c.895A>G	p.Ser299Gly	p.S299G	ENST00000318789	NM_032682.5	299	Agc/Ggc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0073795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	4297	316	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0073795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	64	290	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646594	23646594	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs576081828		P-0073795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	76	412	0	ENST00000261584.4:c.1273G>A	p.Val425Met	p.V425M	ENST00000261584	NM_024675.3	425	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	628	467	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259073	89259073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	102	329	0	ENST00000336596.2:c.217G>A	p.Val73Ile	p.V73I	ENST00000336596	NM_005233.5	73	Gtc/Atc																																																																															
MGA	23269	MSKCC	GRCh37	15	42005646	42005646	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	193	410	0	ENST00000219905.7:c.3382G>T	p.Glu1128Ter	p.E1128*	ENST00000219905	NM_001164273.1	1128	Gag/Tag																																																																															
BRD4	23476	MSKCC	GRCh37	19	15365040	15365040	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	188	386	4	ENST00000263377.2:c.2081A>T	p.Lys694Met	p.K694M	ENST00000263377	NM_058243.2	694	aAg/aTg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001071	150001071	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	59	341	0	ENST00000253339.5:c.2533A>G	p.Thr845Ala	p.T845A	ENST00000253339		845	Act/Gct																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962895	2962896	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0073795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	162	333	0	ENST00000396946.4:c.2012_2013delinsCT	p.Leu671Pro	p.L671P	ENST00000396946	NM_032415.4	671	cTG/cCT																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563278	21563278	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	157	493	0	ENST00000382592.4:c.641A>T	p.Tyr214Phe	p.Y214F	ENST00000382592	NM_014572.2	214	tAc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0073796-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	146	245	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0073796-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	88	488	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073796-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	63	284	0	ENST00000281708.4:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000281708	NM_033632.3	545	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0073796-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	56	231	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9776093	9776093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073796-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	41	390	0	ENST00000377346.4:c.557C>T	p.Pro186Leu	p.P186L	ENST00000377346	NM_005026.3	186	cCg/cTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7166219	7166219	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756862444		P-0073796-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	86	393	0	ENST00000302850.5:c.1807C>T	p.Arg603Cys	p.R603C	ENST00000302850	NM_000208.2	603	Cgc/Tgc																																																																															
CASP8	841	MSKCC	GRCh37	2	202149738	202149738	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0073796-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	17	492	0	ENST00000358485.4:c.1179T>G	p.Tyr393Ter	p.Y393*	ENST00000358485	NM_001080125.1	393	taT/taG																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7982722	7982722	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073796-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	48	360	0	ENST00000319144.4:c.1063G>C	p.Ala355Pro	p.A355P	ENST00000319144	NM_001139.2	355	Gcc/Ccc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	174	411	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0073797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	273	319	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610198	10610198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	200	430	0	ENST00000171111.5:c.512G>T	p.Cys171Phe	p.C171F	ENST00000171111	NM_203500.1	171	tGc/tTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944516	40944516	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	126	353	0	ENST00000373198.4:c.1986C>A	p.His662Gln	p.H662Q	ENST00000373198	NM_133170.3	662	caC/caA																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78796999	78796999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	134	311	0	ENST00000306801.3:c.1112C>T	p.Pro371Leu	p.P371L	ENST00000306801	NM_020761.2	371	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0073797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	91	203	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143324151	143324151	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	76	224	0	ENST00000262992.4:c.312C>G	p.Ile104Met	p.I104M	ENST00000262992	NM_001101669.1	104	atC/atG																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039358	47039359	+	missense_variant	Missense_Mutation	DNP	CT	CT	AC			P-0073797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	28	391	1	ENST00000329236.7:c.750_751delinsAC	p.Ser251Pro	p.S251P	ENST00000329236	NM_001204466.1	250	tcCTcc/tcACcc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546745	9546745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	186	405	0	ENST00000353224.5:c.1277G>T	p.Arg426Met	p.R426M	ENST00000353224	NM_177990.2	426	aGg/aTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399171	139399171	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	30	305	0	ENST00000277541.6:c.4972G>C	p.Glu1658Gln	p.E1658Q	ENST00000277541	NM_017617.3	1658	Gag/Cag																																																																															
TET1	80312	MSKCC	GRCh37	10	70332811	70332811	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	88	311	0	ENST00000373644.4:c.719del	p.Pro240GlnfsTer31	p.P240Qfs*31	ENST00000373644	NM_030625.2	239	tCc/tc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243800972	243800972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	49	285	0	ENST00000263826.5:c.502A>G	p.Lys168Glu	p.K168E	ENST00000263826	NM_005465.4	168	Aag/Gag																																																																															
MED12	9968	MSKCC	GRCh37	X	70343006	70343006	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	49	367	0	ENST00000374080.3:c.1547G>T	p.Arg516Leu	p.R516L	ENST00000374080		516	cGt/cTt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562970	95562970	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	135	380	0	ENST00000343455.3:c.4287G>C	p.Trp1429Cys	p.W1429C	ENST00000343455	NM_177438.2	1429	tgG/tgC																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25497835	25497835	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	116	324	0	ENST00000264709.3:c.614A>T	p.Glu205Val	p.E205V	ENST00000264709	NM_175629.2	205	gAg/gTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176700710	176700710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	127	310	0	ENST00000439151.2:c.5547G>T	p.Lys1849Asn	p.K1849N	ENST00000439151	NM_022455.4	1849	aaG/aaT																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143130136	143130136	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	72	296	0	ENST00000262992.4:c.880G>T	p.Asp294Tyr	p.D294Y	ENST00000262992	NM_001101669.1	294	Gac/Tac																																																																															
MSH3	4437	MSKCC	GRCh37	5	80149962	80149962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	90	311	0	ENST00000265081.6:c.2827G>T	p.Asp943Tyr	p.D943Y	ENST00000265081	NM_002439.4	943	Gac/Tac																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267370	198267370	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0074032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	383	500	0	ENST00000335508.6:c.1987A>C	p.Thr663Pro	p.T663P	ENST00000335508	NM_012433.2	663	Act/Cct																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212589866	212589866	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs561236916		P-0074032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			712	46	480	0	ENST00000342788.4:c.676G>A	p.Val226Ile	p.V226I	ENST00000342788	NM_005235.2	226	Gtc/Atc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588800	69588800	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0074032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	332	424	0	ENST00000168712.1:c.436T>C	p.Tyr146His	p.Y146H	ENST00000168712	NM_002007.2	146	Tat/Cat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0073139-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	257	441	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0073139-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	151	501	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
EZH2	2146	MSKCC	GRCh37	7	148512024	148512024	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073139-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	98	398	0	ENST00000320356.2:c.1654T>G	p.Cys552Gly	p.C552G	ENST00000320356	NM_004456.4	552	Tgt/Ggt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41258543	41258543	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073139-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	116	284	0	ENST00000357654.3:c.142A>T	p.Met48Leu	p.M48L	ENST00000357654	NM_007294.3	48	Atg/Ttg																																																																															
MAX	4149	MSKCC	GRCh37	14	65544679	65544679	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0073365-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			455	96	383	0	ENST00000358664.4:c.247C>T	p.Gln83Ter	p.Q83*	ENST00000358664	NM_002382.4	83	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0073365-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			370	88	395	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86546565	86546579	+	inframe_deletion	In_Frame_Del	DEL	GTGTGACCGAAAGGA	GTGTGACCGAAAGGA	-			P-0073365-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			425	47	431	0	ENST00000262426.4:c.1016_1030del	p.Cys339_Glu343del	p.C339_E343del	ENST00000262426	NM_001451.2	338	atGTGTGACCGAAAGGAg/atg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041720	47041720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072941-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			292	22	151	0	ENST00000329236.7:c.1711C>T	p.Gln571Ter	p.Q571*	ENST00000329236	NM_001204466.1	571	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0072941-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			207	8	219	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061134	38061193	+	inframe_deletion	In_Frame_Del	DEL	GCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAA	GCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAA	-			P-0073787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	78	300	0	ENST00000250448.2:c.796_855del	p.Phe266_Ser285del	p.F266_S285del	ENST00000250448	NM_004496.3	266	TTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGC/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380276	+	missense_variant	Missense_Mutation	DNP	TT	TT	GA			P-0073787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	11	268	0	ENST00000256078.4:c.182_183delinsTC	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAA/cTC																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33689782	33689782	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	59	328	0	ENST00000308377.4:c.1045G>C	p.Gly349Arg	p.G349R	ENST00000308377	NM_152270.3	349	Ggc/Cgc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619138	37619139	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	105	347	0	ENST00000447079.4:c.816dup	p.Gln273AlafsTer25	p.Q273Afs*25	ENST00000447079	NM_015083.1	272	agg/aGgg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47690262	47690263	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCAACA			P-0073787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	44	288	0	ENST00000233146.2:c.1481_1486dup	p.Ser494_Thr495dup	p.S494_T495dup	ENST00000233146	NM_000251.2	494	-/TCAACA																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619113	37619113	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	82	343	0	ENST00000447079.4:c.789del	p.Ser265ValfsTer73	p.S265Vfs*73	ENST00000447079	NM_015083.1	263	aaG/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	148	343	1	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78425869	78425869	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	134	332	0	ENST00000370768.2:c.1576G>A	p.Ala526Thr	p.A526T	ENST00000370768	NM_003902.3	526	Gct/Act																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	124	274	0	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	186	371	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	72	241	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800903	120800903	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	125	320	0	ENST00000257552.2:c.345del	p.Leu116CysfsTer3	p.L116Cfs*3	ENST00000257552	NM_002442.3	115	ggG/gg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425487	49425487	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183702050		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			875	221	464	0	ENST00000301067.7:c.13001C>T	p.Ala4334Val	p.A4334V	ENST00000301067	NM_003482.3	4334	gCc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434562	49434562	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			708	132	359	2	ENST00000301067.7:c.6991del	p.Leu2331Ter	p.L2331*	ENST00000301067	NM_003482.3	2331	Ctg/tg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445499	49445500	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	88	313	0	ENST00000301067.7:c.1966dup	p.Leu656ProfsTer12	p.L656Pfs*12	ENST00000301067	NM_003482.3	656	ctg/cCtg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066890	30066890	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	97	274	0	ENST00000331968.5:c.2241del	p.Ala748LeufsTer8	p.A748Lfs*8	ENST00000331968	NM_002742.2	747	ccC/cc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38591612	38591612	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057518150		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	93	245	0	ENST00000299084.4:c.71G>A	p.Arg24Gln	p.R24Q	ENST00000299084	NM_152594.2	24	cGa/cAa																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	141	363	0	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	162	392	4	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857538	9857538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778951185		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	154	336	0	ENST00000330684.3:c.3863G>A	p.Arg1288His	p.R1288H	ENST00000330684	NM_001134407.1	1288	cGt/cAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	359	462	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	176	392	2	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519985		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			760	36	357	0	ENST00000269305.4:c.857A>G	p.Glu286Gly	p.E286G	ENST00000269305	NM_001126112.2	286	gAa/gGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	190	401	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098392	11098392	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	170	309	0	ENST00000344626.4:c.914del	p.Pro305ArgfsTer21	p.P305Rfs*21	ENST00000344626	NM_003072.3	304	Ccc/cc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220502	1220502	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs121913317		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	157	368	0	ENST00000326873.7:c.595G>A	p.Glu199Lys	p.E199K	ENST00000326873	NM_000455.4	199	Gag/Aag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285110	15285110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	112	351	0	ENST00000263388.2:c.4505G>A	p.Ser1502Asn	p.S1502N	ENST00000263388	NM_000435.2	1502	aGc/aAc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619131	1619131	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759729787		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	162	393	0	ENST00000344749.5:c.1429C>T	p.Arg477Trp	p.R477W	ENST00000344749	NM_001136139.2	477	Cgg/Tgg																																																																															
CIC	23152	MSKCC	GRCh37	19	42791337	42791337	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769885524		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	170	366	0	ENST00000575354.2:c.397G>A	p.Gly133Ser	p.G133S	ENST00000575354	NM_015125.3	133	Ggc/Agc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45864887	45864887	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs186220206		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	174	421	0	ENST00000391945.4:c.1132C>T	p.Arg378Cys	p.R378C	ENST00000391945	NM_000400.3	378	Cgc/Tgc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918991	50918991	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1228707178		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	105	273	0	ENST00000440232.2:c.2728C>T	p.Arg910Trp	p.R910W	ENST00000440232	NM_002691.3	910	Cgg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212423	5212423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768007031		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	160	342	1	ENST00000357368.4:c.4694C>T	p.Thr1565Met	p.T1565M	ENST00000357368	NM_002850.3	1565	aCg/aTg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	171	353	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966149	25966149	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	154	386	0	ENST00000435504.4:c.3057G>C	p.Gln1019His	p.Q1019H	ENST00000435504		1019	caG/caC																																																																															
ALK	238	MSKCC	GRCh37	2	29445400	29445400	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	114	374	0	ENST00000389048.3:c.3433del	p.Leu1145CysfsTer5	p.L1145Cfs*5	ENST00000389048	NM_004304.4	1145	Ctg/tg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	122	349	0	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920370	134920370	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs542190087		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	134	327	0	ENST00000398015.3:c.2185G>A	p.Ala729Thr	p.A729T	ENST00000398015	NM_004441.4	729	Gct/Act																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	137	393	3	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
MST1R	4486	MSKCC	GRCh37	3	49939979	49939979	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	178	415	0	ENST00000296474.3:c.1064A>T	p.Asp355Val	p.D355V	ENST00000296474	NM_002447.2	355	gAt/gTt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	127	302	0	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149450133	149450133	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1272581720		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	49	315	0	ENST00000286301.3:c.1084C>T	p.His362Tyr	p.H362Y	ENST00000286301	NM_005211.3	362	Cac/Tac																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	118	351	2	ENST00000261937.6:c.89del	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970916	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	120	279	0	ENST00000265081.6:c.1147_1148del	p.Lys383GlyfsTer20	p.K383Gfs*20	ENST00000265081	NM_002439.4	381	AAa/a																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405960	157405960	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	168	358	0	ENST00000346085.5:c.2204del	p.Pro735HisfsTer10	p.P735Hfs*10	ENST00000346085	NM_020732.3	734	ggC/gg																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239830	31239830	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	164	314	0	ENST00000376228.5:c.19del	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000376228	NM_002117.5	7	Cga/ga																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323268	31323268	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1322740343		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	68	129	0	ENST00000412585.2:c.721T>C	p.Trp241Arg	p.W241R	ENST00000412585	NM_005514.6	241	Tgg/Cgg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324674	31324675	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	124	162	0	ENST00000412585.2:c.133dup	p.Arg45ProfsTer54	p.R45Pfs*54	ENST00000412585	NM_005514.6	45	cgc/cCgc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971135	13971135	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	111	325	0	ENST00000405192.2:c.794A>G	p.Tyr265Cys	p.Y265C	ENST00000405192	NM_001163147.1	265	tAt/tGt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	109	277	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874149	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	138	396	1	ENST00000262189.6:c.8389_8390del	p.Lys2797GlyfsTer11	p.K2797Gfs*11	ENST00000262189	NM_170606.2	2797	AAg/g																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992720	68992721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs774202059		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	129	312	4	ENST00000288368.4:c.1693dup	p.Ser565PhefsTer3	p.S565Ffs*3	ENST00000288368	NM_024870.2	562	cgt/cgTt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69129953	69129953	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	122	285	0	ENST00000288368.4:c.4707G>T	p.Gln1569His	p.Q1569H	ENST00000288368	NM_024870.2	1569	caG/caT																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635188	87635188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	114	285	0	ENST00000277120.3:c.2240C>T	p.Thr747Met	p.T747M	ENST00000277120		747	aCg/aTg																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166587	118166587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	151	331	2	ENST00000369448.3:c.1097G>A	p.Gly366Asp	p.G366D	ENST00000369448	NM_017709.3	366	gGc/gAc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120508180	120508180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	103	283	0	ENST00000256646.2:c.1577G>A	p.Gly526Glu	p.G526E	ENST00000256646	NM_024408.3	526	gGg/gAg																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228613004	228613004	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375918041		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	173	404	2	ENST00000366696.1:c.23C>T	p.Ala8Val	p.A8V	ENST00000366696	NM_003493.2	8	gCg/gTg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726474	46726474	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	196	355	1	ENST00000371975.4:c.553A>G	p.Met185Val	p.M185V	ENST00000371975	NM_003579.3	185	Atg/Gtg																																																																															
JUN	3725	MSKCC	GRCh37	1	59248511	59248511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	159	378	0	ENST00000371222.2:c.232C>T	p.Arg78Cys	p.R78C	ENST00000371222	NM_002228.3	78	Cgc/Tgc																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514191	69514194	+	frameshift_variant	Frame_Shift_Del	DEL	GAGA	GAGA	-			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	162	376	0	ENST00000294312.3:c.487_490del	p.Ser163IlefsTer46	p.S163Ifs*46	ENST00000294312	NM_005117.2	163	TCTCat/at																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589585	69589585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			830	226	539	0	ENST00000168712.1:c.268G>A	p.Val90Met	p.V90M	ENST00000168712	NM_002007.2	90	Gtg/Atg																																																																															
USP8	9101	MSKCC	GRCh37	15	50773880	50773880	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	150	395	0	ENST00000307179.4:c.1427del	p.Asn476ThrfsTer19	p.N476Tfs*19	ENST00000307179		474	gAa/ga																																																																															
BLM	641	MSKCC	GRCh37	15	91292965	91292965	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs772175681		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	161	358	0	ENST00000355112.3:c.467A>G	p.Asp156Gly	p.D156G	ENST00000355112	NM_000057.2	156	gAt/gGt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3832768	3832769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	153	368	0	ENST00000262367.5:c.1489dup	p.Gln497ProfsTer31	p.Q497Pfs*31	ENST00000262367	NM_004380.2	497	cag/cCag																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544465	86544465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	126	387	0	ENST00000262426.4:c.290G>A	p.Arg97His	p.R97H	ENST00000262426	NM_001451.2	97	cGc/cAc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805668	89805668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	161	339	0	ENST00000389301.3:c.4040C>T	p.Ala1347Val	p.A1347V	ENST00000389301	NM_000135.2	1347	gCc/gTc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004637	16004637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	178	323	2	ENST00000268712.3:c.2617C>T	p.Pro873Ser	p.P873S	ENST00000268712	NM_006311.3	873	Ccc/Tcc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40481667	40481667	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	123	337	0	ENST00000264657.5:c.1140-2A>G		p.X380_splice	ENST00000264657	NM_139276.2	380																																																																																
SOX9	6662	MSKCC	GRCh37	17	70117636	70117657	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCGTCGGGCTCCGGCTCGGA	GCCCGTCGGGCTCCGGCTCGGA	-			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	171	367	0	ENST00000245479.2:c.104_125del	p.Cys35SerfsTer19	p.C35Sfs*19	ENST00000245479	NM_000346.3	35	tGCCCGTCGGGCTCCGGCTCGGAc/tc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11030311	11030311	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	125	309	0	ENST00000327064.4:c.1061A>C	p.Lys354Thr	p.K354T	ENST00000327064	NM_199141.1	354	aAg/aCg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213919	36213920	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	162	338	1	ENST00000222270.7:c.2745_2746del	p.Ser917CysfsTer77	p.S917Cfs*77	ENST00000222270	NM_014727.1	915	acTGag/acag																																																																															
MSH6	2956	MSKCC	GRCh37	2	48032083	48032083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	133	297	0	ENST00000234420.5:c.3473G>A	p.Cys1158Tyr	p.C1158Y	ENST00000234420	NM_000179.2	1158	tGt/tAt																																																																															
TOP1	7150	MSKCC	GRCh37	20	39713114	39713114	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	99	246	0	ENST00000361337.2:c.525del	p.Lys175AsnfsTer46	p.K175Nfs*46	ENST00000361337	NM_003286.2	174	Aaa/aa																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119624636	119624636	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	144	312	0	ENST00000316626.5:c.779A>G	p.Asp260Gly	p.D260G	ENST00000316626		260	gAt/gGt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430311	181430311	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	97	191	0	ENST00000325404.1:c.163C>T	p.Gln55Ter	p.Q55*	ENST00000325404	NM_003106.3	55	Cag/Tag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713217	30713217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	156	328	0	ENST00000359013.4:c.617C>T	p.Ser206Phe	p.S206F	ENST00000359013	NM_001024847.2	206	tCt/tTt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437723	52437723	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	156	357	0	ENST00000460680.1:c.1438A>G	p.Thr480Ala	p.T480A	ENST00000460680	NM_004656.3	480	Aca/Gca																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439169	52439169	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773379358		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	164	365	0	ENST00000460680.1:c.1073C>T	p.Pro358Leu	p.P358L	ENST00000460680	NM_004656.3	358	cCg/cTg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439229	52439229	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	188	350	0	ENST00000460680.1:c.1013C>A	p.Pro338His	p.P338H	ENST00000460680	NM_004656.3	338	cCt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628937	187628938	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	161	350	0	ENST00000441802.2:c.2044dup	p.Met682AsnfsTer11	p.M682Nfs*11	ENST00000441802	NM_005245.3	682	atg/aAtg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1955243	1955243	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1192456885		P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	151	296	0	ENST00000382895.3:c.2330C>T	p.Pro777Leu	p.P777L	ENST00000382895	NM_133330.2	777	cCg/cTg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980485	1980485	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	147	360	0	ENST00000382895.3:c.3950del	p.Pro1317ArgfsTer12	p.P1317Rfs*12	ENST00000382895	NM_133330.2	1316	aCc/ac																																																																															
APC	324	MSKCC	GRCh37	5	112154699	112154699	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	113	250	1	ENST00000257430.4:c.970A>G	p.Thr324Ala	p.T324A	ENST00000257430	NM_000038.5	324	Act/Gct																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161262	56161262	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	117	267	0	ENST00000399503.3:c.1135del	p.Thr379LeufsTer2	p.T379Lfs*2	ENST00000399503	NM_005921.1	377	agA/ag																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911295	29911295	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	95	292	0	ENST00000376809.5:c.594del	p.Asn198LysfsTer16	p.N198Kfs*16	ENST00000376809	NM_002116.7	198	aaC/aa																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239008	31239008	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	147	147	0	ENST00000376228.5:c.461T>C	p.Leu154Pro	p.L154P	ENST00000376228	NM_002117.5	154	cTg/cCg																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239075	31239076	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			779	98	395	0	ENST00000376228.5:c.393dup	p.Arg132AlafsTer7	p.R132Afs*7	ENST00000376228	NM_002117.5	131	-/G																																																																															
PREX2	80243	MSKCC	GRCh37	8	68942762	68942762	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	131	294	1	ENST00000288368.4:c.574A>T	p.Ser192Cys	p.S192C	ENST00000288368	NM_024870.2	192	Agt/Tgt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391727	139391727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	141	372	0	ENST00000277541.6:c.6464G>A	p.Gly2155Asp	p.G2155D	ENST00000277541	NM_017617.3	2155	gGc/gAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396799	139396799	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	117	327	0	ENST00000277541.6:c.5309C>A	p.Pro1770His	p.P1770H	ENST00000277541	NM_017617.3	1770	cCt/cAt																																																																															
TEK	7010	MSKCC	GRCh37	9	27168596	27168597	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	113	270	0	ENST00000380036.4:c.473dup	p.Asn158LysfsTer12	p.N158Kfs*12	ENST00000380036	NM_000459.3	156	-/A																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411223	63411225	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0073792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	141	199	0	ENST00000330258.3:c.1942_1944del	p.Glu648del	p.E648del	ENST00000330258	NM_152424.3	648	GAG/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0073844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	82	385	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912580		P-0073844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	70	275	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0073844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	54	334	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227706	53227706	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1135401800		P-0073844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	35	319	0	ENST00000375401.3:c.2482C>T	p.Arg828Ter	p.R828*	ENST00000375401	NM_004187.3	828	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883773	37883774	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs766671083		P-0073844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	67	367	1	ENST00000269571.5:c.3391dup	p.Leu1131ProfsTer8	p.L1131Pfs*8	ENST00000269571		1129	gcc/gCcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0073844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	67	232	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223811	2223811	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	69	344	0	ENST00000326181.6:c.1109C>G	p.Ala370Gly	p.A370G	ENST00000326181	NM_032271.2	370	gCg/gGg																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230492800	230492800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	27	341	1	ENST00000525115.1:c.392C>T	p.Ala131Val	p.A131V	ENST00000525115		131	gCc/gTc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148513801	148513801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	55	255	0	ENST00000320356.2:c.1480C>T	p.Pro494Ser	p.P494S	ENST00000320356	NM_004456.4	494	Cca/Tca																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	12	288	0	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577103	7577103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	16	300	0	ENST00000269305.4:c.835G>A	p.Gly279Arg	p.G279R	ENST00000269305	NM_001126112.2	279	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0073852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	253	365	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0073852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	261	328	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175600	112175600	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	138	305	0	ENST00000257430.4:c.4312del	p.Thr1438HisfsTer35	p.T1438Hfs*35	ENST00000257430	NM_000038.5	1437	Aaa/aa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781170	135781170	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761959210		P-0073852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	147	325	0	ENST00000298552.3:c.1795G>A	p.Gly599Arg	p.G599R	ENST00000298552	NM_001162426.1	599	Ggg/Agg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221034	5221034	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	116	331	0	ENST00000357368.4:c.3432C>G	p.Asp1144Glu	p.D1144E	ENST00000357368	NM_002850.3	1144	gaC/gaG																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280772	41280772	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	146	322	0	ENST00000349496.5:c.2285T>G	p.Leu762Arg	p.L762R	ENST00000349496	NM_001904.3	762	cTc/cGc																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858119	152858119	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370810560		P-0073852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	135	328	2	ENST00000406277.2:c.496G>A	p.Val166Ile	p.V166I	ENST00000406277	NM_152274.4	166	Gtc/Atc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31368163	31368163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065659-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			493	399	382	0	ENST00000328111.2:c.34G>A	p.Glu12Lys	p.E12K	ENST00000328111	NM_006892.3	12	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653770	89653862	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAAAGTACTCAGATATTTATCCAAACATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGCGTATACAGGAACAATATTGATGATGTAG	TAAAGTACTCAGATATTTATCCAAACATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGCGTATACAGGAACAATATTGATGATGTAG	-			P-0065659-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			134	77	187	0	ENST00000371953.3:c.80-9_163del		p.X27_splice	ENST00000371953	NM_000314.4	27																																																																																
GATA3	2625	MSKCC	GRCh37	10	8111500	8111501	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0065659-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			450	320	338	0	ENST00000346208.3:c.986_987delinsTT	p.Arg329Ile	p.R329I	ENST00000346208		329	aGG/aTT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0072943-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	139	277	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578447	7578447	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072943-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			535	162	489	0	ENST00000269305.4:c.483del	p.Ile162SerfsTer8	p.I162Sfs*8	ENST00000269305	NM_001126112.2	161	gcC/gc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602763	10602763	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs774469695		P-0072943-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			476	171	482	0	ENST00000171111.5:c.815G>T	p.Arg272Leu	p.R272L	ENST00000171111	NM_203500.1	272	cGc/cTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1219413	1219413	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0072943-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	102	397	0	ENST00000326873.7:c.464+1G>A		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
FOXO1	2308	MSKCC	GRCh37	13	41239934	41239934	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072943-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	76	287	0	ENST00000379561.5:c.416C>A	p.Pro139His	p.P139H	ENST00000379561	NM_002015.3	139	cCc/cAc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99478118	99478118	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072943-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			539	137	417	0	ENST00000268035.6:c.3022G>T	p.Gly1008Trp	p.G1008W	ENST00000268035	NM_000875.3	1008	Ggg/Tgg																																																																															
TERT	7015	MSKCC	GRCh37	5	1264707	1264707	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0072943-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			836	131	358	1	ENST00000310581.5:c.2655G>T	p.Arg885Ser	p.R885S	ENST00000310581	NM_198253.2	885	agG/agT																																																																															
ATM	472	MSKCC	GRCh37	11	108224583	108224583	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730881329		P-0073263-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			358	125	410	0	ENST00000278616.4:c.8762C>A	p.Thr2921Lys	p.T2921K	ENST00000278616	NM_000051.3	2921	aCg/aAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0073263-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	95	226	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0073263-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			459	169	519	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68989639	68989639	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073263-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			542	95	392	0	ENST00000288368.4:c.1577G>T	p.Cys526Phe	p.C526F	ENST00000288368	NM_024870.2	526	tGc/tTc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94204739	94204739	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0073263-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			416	111	335	0	ENST00000323929.3:c.845+1G>C		p.X282_splice	ENST00000323929	NM_005591.3	282																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36223892	36223892	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073263-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			659	69	560	0	ENST00000222270.7:c.6442C>G	p.Pro2148Ala	p.P2148A	ENST00000222270	NM_014727.1	2148	Ccc/Gcc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127390	55127390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073263-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			538	66	544	0	ENST00000257290.5:c.178C>G	p.Pro60Ala	p.P60A	ENST00000257290	NM_006206.4	60	Ccc/Gcc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32181940	32181940	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073263-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			516	94	480	0	ENST00000375023.3:c.2114C>A	p.Thr705Asn	p.T705N	ENST00000375023	NM_004557.3	705	aCc/aAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139403366	139403375	+	frameshift_variant	Frame_Shift_Del	DEL	AGGAGCCGCA	AGGAGCCGCA	-			P-0073263-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	122	451	0	ENST00000277541.6:c.3118_3127del	p.Cys1040ThrfsTer136	p.C1040Tfs*136	ENST00000277541	NM_017617.3	1040	TGCGGCTCCTac/ac																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519967		P-0073311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	85	373	0	ENST00000347630.2:c.398T>C	p.Phe133Ser	p.F133S	ENST00000347630	NM_001007230.1	133	tTc/tCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073700-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	144	456	0	ENST00000269305.4:c.503A>T	p.His168Leu	p.H168L	ENST00000269305	NM_001126112.2	168	cAc/cTc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0073748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	128	440	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696450	47696450	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	77	459	0	ENST00000347630.2:c.373T>G	p.Phe125Val	p.F125V	ENST00000347630	NM_001007230.1	125	Ttt/Gtt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44820622	44820632	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGATTATCC	GAAGATTATCC	-			P-0073748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	61	158	0	ENST00000377967.4:c.319_329del	p.Glu107LysfsTer15	p.E107Kfs*15	ENST00000377967	NM_021140.2	107	GAAGATTATCCa/a																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16012098	16012098	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0073748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	69	342	1	ENST00000268712.3:c.2182+2T>A		p.X728_splice	ENST00000268712	NM_006311.3	728																																																																																
AR	367	MSKCC	GRCh37	X	66943551	66943552	+	missense_variant	Missense_Mutation	DNP	CA	CA	GG			P-0073748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	77	187	0	ENST00000374690.3:c.2631_2632delinsGG	p.Phe877_Thr878delinsLeuAla	p.F877_T878delinsLA	ENST00000374690	NM_000044.3	877	ttCAct/ttGGct																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391119	139391119	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780869345		P-0073753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			779	59	464	0	ENST00000277541.6:c.7072G>A	p.Ala2358Thr	p.A2358T	ENST00000277541	NM_017617.3	2358	Gcc/Acc																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439790	51439790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	64	462	0	ENST00000262662.1:c.355G>T	p.Val119Leu	p.V119L	ENST00000262662		119	Gtg/Ttg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131894991	131894991	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	28	231	0	ENST00000265335.6:c.145C>G	p.Leu49Val	p.L49V	ENST00000265335		49	Cta/Gta																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678427	88678427	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	59	398	0	ENST00000360948.2:c.1109A>C	p.His370Pro	p.H370P	ENST00000360948	NM_001012338.2	370	cAc/cCc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128044288	128044288	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	51	382	0	ENST00000285398.2:c.1333A>T	p.Thr445Ser	p.T445S	ENST00000285398	NM_000122.1	445	Acc/Tcc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652247	48652248	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0073753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	80	433	1	ENST00000376670.3:c.918_919delinsAA	p.Asn306_Arg307delinsLysSer	p.N306_R307delinsKS	ENST00000376670	NM_002049.3	306	aaCCgc/aaAAgc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621011	1621025	+	inframe_deletion	In_Frame_Del	DEL	GAGAAGTTATTGCTT	GAGAAGTTATTGCTT	-			P-0073753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			850	63	565	0	ENST00000344749.5:c.1035_1049del	p.Asn347_Ser351del	p.N347_S351del	ENST00000344749	NM_001136139.2	345	tcAAGCAATAACTTCTCg/tcg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670396	134670396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	55	391	0	ENST00000398015.3:c.307C>A	p.Pro103Thr	p.P103T	ENST00000398015	NM_004441.4	103	Cca/Aca																																																																															
JUN	3725	MSKCC	GRCh37	1	59248685	59248685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			765	48	478	0	ENST00000371222.2:c.58C>A	p.Pro20Thr	p.P20T	ENST00000371222	NM_002228.3	20	Ccg/Acg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119812268	119812268	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	55	333	0	ENST00000316626.5:c.14C>G	p.Pro5Arg	p.P5R	ENST00000316626		5	cCc/cGc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176700780	176700780	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	40	320	0	ENST00000439151.2:c.5617A>T	p.Ile1873Leu	p.I1873L	ENST00000439151	NM_022455.4	1873	Ata/Tta																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433388	49433388	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0073812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	55	436	0	ENST00000301067.7:c.8059C>T	p.Arg2687Ter	p.R2687*	ENST00000301067	NM_003482.3	2687	Cga/Tga																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526531	31526531	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77034974		P-0073812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	63	341	0	ENST00000344624.3:c.509C>T	p.Pro170Leu	p.P170L	ENST00000344624		170	cCg/cTg																																																																															
BARD1	580	MSKCC	GRCh37	2	215646111	215646111	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	47	341	0	ENST00000260947.4:c.487G>T	p.Val163Leu	p.V163L	ENST00000260947	NM_000465.2	163	Gtg/Ttg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653845	89653845	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	28	233	0	ENST00000371953.3:c.143A>G	p.Asn48Ser	p.N48S	ENST00000371953	NM_000314.4	48	aAc/aGc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123189998	123189998	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	33	280	0	ENST00000218089.9:c.1217C>A	p.Thr406Asn	p.T406N	ENST00000218089	NM_001042749.1	406	aCt/aAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831354	72831354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	96	479	0	ENST00000268489.5:c.5227C>A	p.Gln1743Lys	p.Q1743K	ENST00000268489	NM_006885.3	1743	Caa/Aaa																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52723109	52723109	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	51	398	0	ENST00000322088.6:c.1294G>C	p.Gly432Arg	p.G432R	ENST00000322088	NM_014225.5	432	Gga/Cga																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112892446	112892446	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	38	291	0	ENST00000351677.2:c.604A>T	p.Met202Leu	p.M202L	ENST00000351677	NM_002834.3	202	Atg/Ttg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323108	31323108	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			858	61	577	0	ENST00000412585.2:c.881del	p.Leu294ProfsTer3	p.L294Pfs*3	ENST00000412585	NM_005514.6	294	cTc/cc																																																																															
AXL	558	MSKCC	GRCh37	19	41744507	41744507	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	36	362	0	ENST00000301178.4:c.1130del	p.Pro377GlnfsTer4	p.P377Qfs*4	ENST00000301178	NM_021913.4	376	aCc/ac																																																																															
CDC73	79577	MSKCC	GRCh37	1	193117076	193117076	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	55	294	0	ENST00000367435.3:c.812del	p.Pro271GlnfsTer48	p.P271Qfs*48	ENST00000367435	NM_024529.4	270	gCc/gc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661111	227661111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	70	462	0	ENST00000305123.5:c.2344G>A	p.Glu782Lys	p.E782K	ENST00000305123	NM_005544.2	782	Gag/Aag																																																																															
NBN	4683	MSKCC	GRCh37	8	90967716	90967716	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0073812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	27	327	0	ENST00000265433.3:c.1192C>T	p.Gln398Ter	p.Q398*	ENST00000265433	NM_002485.4	398	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579327	7579327	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	83	402	0	ENST00000269305.4:c.360del	p.Lys120AsnfsTer3	p.K120Nfs*3	ENST00000269305	NM_001126112.2	120	aaG/aa																																																																															
GAB1	2549	MSKCC	GRCh37	4	144359334	144359334	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	73	370	0	ENST00000262994.4:c.776A>T	p.Tyr259Phe	p.Y259F	ENST00000262994	NM_002039.3	259	tAt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579547	7579548	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0073812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	86	414	0	ENST00000269305.4:c.139_140del	p.Pro47GlyfsTer4	p.P47Gfs*4	ENST00000269305	NM_001126112.2	47	CCg/g																																																																															
MED12	9968	MSKCC	GRCh37	X	70348219	70348219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	65	409	0	ENST00000374080.3:c.3283G>T	p.Val1095Leu	p.V1095L	ENST00000374080		1095	Gtg/Ttg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24143216	24143216	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			746	75	526	0	ENST00000263121.7:c.448A>T	p.Thr150Ser	p.T150S	ENST00000263121	NM_003073.3	150	Acc/Tcc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865185	57865186	+	missense_variant	Missense_Mutation	DNP	CA	CA	TT			P-0073812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	41	388	0	ENST00000228682.2:c.2662_2663delinsTT	p.His888Phe	p.H888F	ENST00000228682	NM_005269.2	888	CAt/TTt																																																																															
NUF2	83540	MSKCC	GRCh37	1	163313658	163313658	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0073812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	39	259	0	ENST00000271452.3:c.805A>G	p.Arg269Gly	p.R269G	ENST00000271452	NM_145697.2	269	Aga/Gga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112401	115112401	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	58	455	0	ENST00000257566.3:c.1339C>A	p.Arg447Ser	p.R447S	ENST00000257566	NM_016569.3	447	Cgc/Agc																																																																															
MED12	9968	MSKCC	GRCh37	X	70343041	70343041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	50	385	0	ENST00000374080.3:c.1582C>A	p.Leu528Ile	p.L528I	ENST00000374080		528	Ctc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0073813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	60	324	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792542	33792542	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	76	317	0	ENST00000498907.2:c.779A>G	p.His260Arg	p.H260R	ENST00000498907	NM_004364.3	260	cAc/cGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0073895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	12	245	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0053151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			439	32	333	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0053151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			385	43	228	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	17	326	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	49	313	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591077	67591077	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			452	56	312	0	ENST00000274335.5:c.1670G>C	p.Arg557Pro	p.R557P	ENST00000274335		557	cGa/cCa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160640	56160641	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0053151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			466	33	322	0	ENST00000399503.3:c.916dup	p.Arg306ProfsTer4	p.R306Pfs*4	ENST00000399503	NM_005921.1	305	aac/aaCc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812259	212812259	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs991337964		P-0067696-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			410	234	325	0	ENST00000342788.4:c.317G>A	p.Arg106His	p.R106H	ENST00000342788	NM_005235.2	106	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0067696-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			534	644	207	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101910553	101911559	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCAGATAACCGTTAACCAGGAATTTAGGGAAAATGCTTTTTTCCAGCAGTATCTGAGCTGCTCAACTTCAGCTCTAACAAAAAGTTTTAGAAACGTTTTTGTAATTGTAAATTTAAAGATTCGTAAGATGAATTTTATTTAACCTCTCCTTAATTGCTAGCTGTTACTATTACAATATTGGTGAAGCAGAGCATATTCCTCCAGGTTTGAAGATTTGTAGCTTAAAAAGGCTATAAAAAGCTGTTCAGTTCAGTAGTTGATTTTACGTCTTAAACTATTGTAGGACTCAGCAGAACCTCTGATAAGCAAGAGAGCTTGCTACCTCCAACAAAATCACATCTCCAGGCCCAAATAAATAAAATGTATTTCAGCATGCTTAAGGAATTTGCATGTGACATAGTTTAATAAATGAGAGTGCTGCTAGATTTTGTCTTTTAGAAATTTGATCTACTTGGGAGGCTGAAGTGGGAGGATTGCTGGAGCCTGGGAGGTCAAGGCTGCAGTGAGCTGAGGGCATGCCATTGCATTCCACTTTGGGCGGCAGAGTGAGACCCTGTCTCAAAAAAAAAAAAAAGAAAGAAAAATTTGATGTGAATACTTCAAAGTACAAACTTAAAATTTCAGTGTGAGGTCAGATTTCTTCTTTGCTTTGCCCAGCTCTGGTTTAGGATTCGGCCTTTTCAGGTTTGCTAAATGAGTCACTCTTTGTCCACCTGCTTTCCAGCACTGGCACCAGTACCCTATTGATGGAAATTTATGTAATTTCTACTCATTTGCTATTACAAATAATGCTTAAACAATAACAAGTGTATATGTCATTTAAAAAGAAAATTTACACGTAAAAATTCTTATCCAGACCAATGGAAAATGGTGCATGCATTAATTTTTTTTTTTATATTTTCTTGTAGGCCTTGAGAGTAATGGCTAAAATTATGAGAGAATGTTGGTATGCCAATGGAGCAGCTAGGCTTACAGCATTGCGGATTAAGAAAACATTATCGCAACT	CCCAGATAACCGTTAACCAGGAATTTAGGGAAAATGCTTTTTTCCAGCAGTATCTGAGCTGCTCAACTTCAGCTCTAACAAAAAGTTTTAGAAACGTTTTTGTAATTGTAAATTTAAAGATTCGTAAGATGAATTTTATTTAACCTCTCCTTAATTGCTAGCTGTTACTATTACAATATTGGTGAAGCAGAGCATATTCCTCCAGGTTTGAAGATTTGTAGCTTAAAAAGGCTATAAAAAGCTGTTCAGTTCAGTAGTTGATTTTACGTCTTAAACTATTGTAGGACTCAGCAGAACCTCTGATAAGCAAGAGAGCTTGCTACCTCCAACAAAATCACATCTCCAGGCCCAAATAAATAAAATGTATTTCAGCATGCTTAAGGAATTTGCATGTGACATAGTTTAATAAATGAGAGTGCTGCTAGATTTTGTCTTTTAGAAATTTGATCTACTTGGGAGGCTGAAGTGGGAGGATTGCTGGAGCCTGGGAGGTCAAGGCTGCAGTGAGCTGAGGGCATGCCATTGCATTCCACTTTGGGCGGCAGAGTGAGACCCTGTCTCAAAAAAAAAAAAAAGAAAGAAAAATTTGATGTGAATACTTCAAAGTACAAACTTAAAATTTCAGTGTGAGGTCAGATTTCTTCTTTGCTTTGCCCAGCTCTGGTTTAGGATTCGGCCTTTTCAGGTTTGCTAAATGAGTCACTCTTTGTCCACCTGCTTTCCAGCACTGGCACCAGTACCCTATTGATGGAAATTTATGTAATTTCTACTCATTTGCTATTACAAATAATGCTTAAACAATAACAAGTGTATATGTCATTTAAAAAGAAAATTTACACGTAAAAATTCTTATCCAGACCAATGGAAAATGGTGCATGCATTAATTTTTTTTTTTATATTTTCTTGTAGGCCTTGAGAGTAATGGCTAAAATTATGAGAGAATGTTGGTATGCCAATGGAGCAGCTAGGCTTACAGCATTGCGGATTAAGAAAACATTATCGCAACT	-			P-0067696-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			2	136	1	0	ENST00000374994.4:c.1386+488_1485del		p.X462_splice	ENST00000374994	NM_004612.2	462																																																																																
ACVR1	90	MSKCC	GRCh37	2	158594178	158594178	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0067696-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			415	308	348	0	ENST00000263640.3:c.1396-1G>A		p.X466_splice	ENST00000263640	NM_001105.4	466																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151856073	151856073	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067696-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			916	49	410	0	ENST00000262189.6:c.11545C>G	p.Gln3849Glu	p.Q3849E	ENST00000262189	NM_170606.2	3849	Cag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578450	+	frameshift_variant	Frame_Shift_Del	DEL	GCTTGTAGATGGCC	GCTTGTAGATGGCC	A			P-0067696-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			633	449	453	1	ENST00000269305.4:c.480_493delinsT	p.Met160IlefsTer6	p.M160Ifs*6	ENST00000269305	NM_001126112.2	160	atGGCCATCTACAAGCag/atTag																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792903	33792903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072246-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			179	29	224	0	ENST00000498907.2:c.418G>A	p.Asp140Asn	p.D140N	ENST00000498907	NM_004364.3	140	Gac/Aac																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs113954997		P-0072246-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			334	37	286	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281629	49281629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749662416		P-0072246-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	41	374	0	ENST00000282018.3:c.676C>T	p.Arg226Trp	p.R226W	ENST00000282018	NM_020377.2	226	Cgg/Tgg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40441885	40441885	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0072246-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			402	118	376	1	ENST00000345506.4:c.130G>A	p.Asp44Asn	p.D44N	ENST00000345506	NM_003152.3	44	Gat/Aat																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519971		P-0073666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	119	362	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112175789	112175790	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0073666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	21	424	0	ENST00000257430.4:c.4500_4501del	p.Ser1501LeufsTer12	p.S1501Lfs*12	ENST00000257430	NM_000038.5	1500	TTt/t																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0073667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	23	194	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863218	57863218	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	28	336	0	ENST00000228682.2:c.1313C>A	p.Pro438Gln	p.P438Q	ENST00000228682	NM_005269.2	438	cCa/cAa																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33445602	33445602	+	intron_variant	Intron	SNP	A	A	G			P-0073668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	23	346	0	ENST00000335858.7:c.144+528T>C		p.*48*	ENST00000335858	NM_133629.2																																																																																	
ARID1B	57492	MSKCC	GRCh37	6	157100549	157100549	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	30	203	0	ENST00000346085.5:c.1486A>G	p.Arg496Gly	p.R496G	ENST00000346085	NM_020732.3	496	Agg/Ggg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45799234	45799234	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0073668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	36	401	0	ENST00000372115.3:c.158-1G>A		p.X53_splice	ENST00000372115	NM_001048171.1	53																																																																																
FAT1	2195	MSKCC	GRCh37	4	187557885	187557885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	53	418	0	ENST00000441802.2:c.3826G>A	p.Ala1276Thr	p.A1276T	ENST00000441802	NM_005245.3	1276	Gcc/Acc																																																																															
KDR	3791	MSKCC	GRCh37	4	55955567	55955567	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	203	307	0	ENST00000263923.4:c.3378G>T	p.Arg1126Ser	p.R1126S	ENST00000263923	NM_002253.2	1126	agG/agT																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779494	3779494	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0073669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	161	486	0	ENST00000262367.5:c.5554C>T	p.Gln1852Ter	p.Q1852*	ENST00000262367	NM_004380.2	1852	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0073669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	215	376	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15295774	15295774	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1289281166		P-0073669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	497	476	0	ENST00000263388.2:c.2353C>T	p.Arg785Cys	p.R785C	ENST00000263388	NM_000435.2	785	Cgc/Tgc																																																																															
TET2	54790	MSKCC	GRCh37	4	106193787	106193787	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs749210253		P-0073669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	367	356	0	ENST00000380013.4:c.4249G>T	p.Val1417Phe	p.V1417F	ENST00000380013	NM_001127208.2	1417	Gtt/Ttt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974767	21974768	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0073669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	252	352	0	ENST00000304494.5:c.59_60del	p.Ala20GlyfsTer23	p.A20Gfs*23	ENST00000304494	NM_000077.4	20	gCG/g																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11113796	11113796	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	299	357	0	ENST00000344626.4:c.1904A>T	p.Lys635Ile	p.K635I	ENST00000344626	NM_003072.3	635	aAa/aTa																																																																															
RET	5979	MSKCC	GRCh37	10	43572700	43572718	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	ACGGGCGATGGCGAAGGCG	ACGGGCGATGGCGAAGGCG	-			P-0073669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	72	231	0	ENST00000355710.3:c.-4_15del		p.*2*	ENST00000355710	NM_020975.4																																																																																	
FUBP1	8880	MSKCC	GRCh37	1	78422305	78422305	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1216742314		P-0073669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	267	397	0	ENST00000370768.2:c.1657C>T	p.Pro553Ser	p.P553S	ENST00000370768	NM_003902.3	553	Cca/Tca																																																																															
ATR	545	MSKCC	GRCh37	3	142234353	142234353	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0073669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	275	268	0	ENST00000350721.4:c.4387A>T	p.Lys1463Ter	p.K1463*	ENST00000350721	NM_001184.3	1463	Aag/Tag																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59876549	59876549	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	104	321	0	ENST00000259008.2:c.1252G>T	p.Ala418Ser	p.A418S	ENST00000259008	NM_032043.2	418	Gct/Tct																																																																															
PARK2	5071	MSKCC	GRCh37	6	162394397	162394397	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	216	366	0	ENST00000366898.1:c.671T>A	p.Val224Glu	p.V224E	ENST00000366898	NM_004562.2	224	gTa/gAa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483892	88483892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	96	334	0	ENST00000360948.2:c.1678C>A	p.Leu560Ile	p.L560I	ENST00000360948	NM_001012338.2	560	Ctc/Atc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313259	30313259	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0073669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	140	389	0	ENST00000262643.3:c.952+1G>T		p.X318_splice	ENST00000262643	NM_001238.2	318																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11098500	11098500	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	282	461	0	ENST00000344626.4:c.1018G>T	p.Ala340Ser	p.A340S	ENST00000344626	NM_003072.3	340	Gcg/Tcg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0073686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	242	430	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs397517199		P-0073686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	186	256	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0073686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	148	390	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
RB1	5925	MSKCC	GRCh37	13	49050886	49050886	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144668210		P-0073686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	110	334	3	ENST00000267163.4:c.2570G>A	p.Arg857His	p.R857H	ENST00000267163	NM_000321.2	857	cGt/cAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29546098	29546098	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0073686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	253	423	0	ENST00000358273.4:c.1603C>T	p.Gln535Ter	p.Q535*	ENST00000358273	NM_001042492.2	535	Cag/Tag																																																																															
ATR	545	MSKCC	GRCh37	3	142204006	142204006	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs886058052		P-0073686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	103	370	0	ENST00000350721.4:c.6197G>A	p.Arg2066Gln	p.R2066Q	ENST00000350721	NM_001184.3	2066	cGg/cAg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12647757	12647757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	83	313	0	ENST00000251849.4:c.623C>T	p.Ala208Val	p.A208V	ENST00000251849	NM_002880.3	208	gCa/gTa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39222300	39222300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	89	336	0	ENST00000402219.2:c.3310G>A	p.Val1104Ile	p.V1104I	ENST00000402219	NM_005633.3	1104	Gta/Ata																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3801807	3801807	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0073686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	107	395	0	ENST00000262367.5:c.3699G>C	p.Arg1233Ser	p.R1233S	ENST00000262367	NM_004380.2	1233	agG/agC																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343987	118343988	+	missense_variant	Missense_Mutation	DNP	AG	AG	TT			P-0073686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	93	418	0	ENST00000534358.1:c.2113_2114delinsTT	p.Ser705Phe	p.S705F	ENST00000534358	NM_005933.3	705	AGt/TTt																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778161	27778161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	155	625	0	ENST00000369163.2:c.310C>T	p.Leu104Phe	p.L104F	ENST00000369163	NM_003536.2	104	Ctc/Ttc																																																																															
ATRX	546	MSKCC	GRCh37	X	76952168	76952168	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0073686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	110	244	0	ENST00000373344.5:c.267T>A	p.Tyr89Ter	p.Y89*	ENST00000373344	NM_000489.3	89	taT/taA																																																																															
RASA1	5921	MSKCC	GRCh37	5	86682716	86682716	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	107	275	0	ENST00000274376.6:c.2921T>C	p.Leu974Pro	p.L974P	ENST00000274376	NM_002890.2	974	cTt/cCt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0072421-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			513	166	386	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0072421-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			433	76	459	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0072421-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			521	73	383	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041036	47041056	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAACAGCCAGGTGAGTGAGCC	CAACAGCCAGGTGAGTGAGCC	TA			P-0072421-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			571	140	451	1	ENST00000329236.7:c.1332_1341+11delinsTA		p.X444_splice	ENST00000329236	NM_001204466.1	444																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0072946-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			205	15	261	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940597	49940597	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072946-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			474	28	578	0	ENST00000296474.3:c.446A>C	p.Glu149Ala	p.E149A	ENST00000296474	NM_002447.2	149	gAg/gCg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858349	9858349	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775756583		P-0073078-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	26	527	0	ENST00000330684.3:c.3052G>A	p.Val1018Met	p.V1018M	ENST00000330684	NM_001134407.1	1018	Gtg/Atg																																																																															
NF1	4763	MSKCC	GRCh37	17	29588751	29588751	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs760703505		P-0073078-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	41	417	0	ENST00000358273.4:c.4600C>T	p.Arg1534Ter	p.R1534*	ENST00000358273	NM_001042492.2	1534	Cga/Tga																																																																															
BRCA1	672	MSKCC	GRCh37	17	41223085	41223085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs890599236		P-0073078-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			387	44	528	0	ENST00000357654.3:c.4846G>A	p.Ala1616Thr	p.A1616T	ENST00000357654	NM_007294.3	1616	Gct/Act																																																																															
MET	4233	MSKCC	GRCh37	7	116411868	116411892	+	intron_variant	Intron	DEL	TCTTTAACAAGCTCTTTCTTTCTCT	TCTTTAACAAGCTCTTTCTTTCTCT	-			P-0073078-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	103	584	0	ENST00000397752.3:c.2888-35_2888-11del		p.*963*	ENST00000397752	NM_000245.2																																																																																	
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0073239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	74	333	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0073239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	149	521	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974725	21974726	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCT			P-0073239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	162	493	0	ENST00000304494.5:c.98_101dup	p.Ala36GlyfsTer9	p.A36Gfs*9	ENST00000304494	NM_000077.4	34	gcg/gcAGGCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs863224499		P-0073325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	179	533	0	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
PRKD1	5587	MSKCC	GRCh37	14	30066928	30066928	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238310800		P-0073325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	130	353	0	ENST00000331968.5:c.2203G>A	p.Gly735Arg	p.G735R	ENST00000331968	NM_002742.2	735	Gga/Aga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0073325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	250	329	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577541	7577541	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs786201762		P-0073583-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	22	477	0	ENST00000269305.4:c.740A>T	p.Asn247Ile	p.N247I	ENST00000269305	NM_001126112.2	247	aAc/aTc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86658380	86658383	+	frameshift_variant	Frame_Shift_Del	DEL	GTAC	GTAC	-			P-0073583-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	31	317	0	ENST00000274376.6:c.1345_1348del	p.Val449SerfsTer33	p.V449Sfs*33	ENST00000274376	NM_002890.2	449	GTACtc/tc																																																																															
NF1	4763	MSKCC	GRCh37	17	29664535	29664536	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0073583-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	29	433	0	ENST00000358273.4:c.6585_6586del	p.Glu2195AspfsTer46	p.E2195Dfs*46	ENST00000358273	NM_001042492.2	2193	GAg/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0073587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	68	711	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221243	1221243	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1057520606		P-0073587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	67	585	1	ENST00000326873.7:c.766G>T	p.Glu256Ter	p.E256*	ENST00000326873	NM_000455.4	256	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0073587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	48	423	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
RB1	5925	MSKCC	GRCh37	13	48955393	48955475	+	frameshift_variant	Frame_Shift_Del	DEL	TCAGAATCTTGATTCTGGAACAGATTTGTCTTTCCCATGGATTCTGAATGTGCTTAATTTAAAAGCCTTTGATTTTTACAAAG	TCAGAATCTTGATTCTGGAACAGATTTGTCTTTCCCATGGATTCTGAATGTGCTTAATTTAAAAGCCTTTGATTTTTACAAAG	-			P-0073587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	49	332	0	ENST00000267163.4:c.1510_1592del	p.Gln504AspfsTer23	p.Q504Dfs*23	ENST00000267163	NM_000321.2	503	tcTCAGAATCTTGATTCTGGAACAGATTTGTCTTTCCCATGGATTCTGAATGTGCTTAATTTAAAAGCCTTTGATTTTTACAAAGtg/tctg																																																																															
EP300	2033	MSKCC	GRCh37	22	41537070	41537070	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073587-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	80	458	0	ENST00000263253.7:c.1897C>G	p.Leu633Val	p.L633V	ENST00000263253	NM_001429.3	633	Cta/Gta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0073609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	110	183	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004453	150004453	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	124	440	0	ENST00000253339.5:c.1772A>C	p.Asp591Ala	p.D591A	ENST00000253339		591	gAt/gCt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115722	8115722	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	186	380	0	ENST00000346208.3:c.1068G>C	p.Met356Ile	p.M356I	ENST00000346208		356	atG/atC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151841851	151841851	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0073609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	180	426	0	ENST00000262189.6:c.14290A>T	p.Lys4764Ter	p.K4764*	ENST00000262189	NM_170606.2	4764	Aag/Tag																																																																															
ALK	238	MSKCC	GRCh37	2	29543663	29543665	+	missense_variant	Missense_Mutation	ONP	TTG	TTG	CTT			P-0073609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	146	472	0	ENST00000389048.3:c.1498_1500delinsAAG	p.Gln500Lys	p.Q500K	ENST00000389048	NM_004304.4	500	CAA/AAG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0073610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	168	561	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0073610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	74	421	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610363	10610363	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	191	534	0	ENST00000171111.5:c.347G>C	p.Arg116Pro	p.R116P	ENST00000171111	NM_203500.1	116	cGg/cCg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87636224	87636224	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	202	470	0	ENST00000277120.3:c.2389G>T	p.Glu797Ter	p.E797*	ENST00000277120		797	Gag/Tag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675217	30675217	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0073610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	88	542	0	ENST00000376406.3:c.3028A>T	p.Lys1010Ter	p.K1010*	ENST00000376406	NM_014641.2	1010	Aag/Tag																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38282153	38282154	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0073610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	81	575	0	ENST00000425967.3:c.902dup	p.Ser302Ter	p.S302*	ENST00000425967	NM_001174067.1	301	ggt/ggGt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098826	47098826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	98	572	0	ENST00000409792.3:c.6448C>A	p.Leu2150Met	p.L2150M	ENST00000409792	NM_014159.6	2150	Ctg/Atg																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981954	63981954	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	122	504	0	ENST00000295900.6:c.2456A>C	p.His819Pro	p.H819P	ENST00000295900	NM_000333.3	819	cAc/cCc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372084	55372084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	238	511	0	ENST00000297316.4:c.774C>A	p.Asp258Glu	p.D258E	ENST00000297316	NM_022454.3	258	gaC/gaA																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975474	13975474	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs776585267		P-0073610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	191	435	0	ENST00000405192.2:c.413C>G	p.Pro138Arg	p.P138R	ENST00000405192	NM_001163147.1	138	cCc/cGc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145743003	145743003	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	100	387	0	ENST00000428558.2:c.101C>A	p.Ala34Glu	p.A34E	ENST00000428558	NM_004260.3	34	gCg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073672-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			377	138	432	0	ENST00000269305.4:c.398T>A	p.Met133Lys	p.M133K	ENST00000269305	NM_001126112.2	133	aTg/aAg																																																																															
CBL	867	MSKCC	GRCh37	11	119148875	119148875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs397517076		P-0073672-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			364	68	269	1	ENST00000264033.4:c.1096-1G>T		p.X366_splice	ENST00000264033	NM_005188.3	366																																																																																
BARD1	580	MSKCC	GRCh37	2	215645649	215645649	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073672-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	70	362	0	ENST00000260947.4:c.949G>C	p.Glu317Gln	p.E317Q	ENST00000260947	NM_000465.2	317	Gaa/Caa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47158213	47158213	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0073672-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			281	57	277	0	ENST00000409792.3:c.4486C>T	p.Arg1496Ter	p.R1496*	ENST00000409792	NM_014159.6	1496	Cga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1220439	1220448	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCCGGGGA	AAGCCGGGGA	-			P-0073672-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			68	241	408	0	ENST00000326873.7:c.533_542del	p.Lys178ThrfsTer106	p.K178Tfs*106	ENST00000326873	NM_000455.4	178	AAGCCGGGGAac/ac																																																																															
AR	367	MSKCC	GRCh37	X	66765452	66765452	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073672-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			315	266	395	0	ENST00000374690.3:c.464A>T	p.Glu155Val	p.E155V	ENST00000374690	NM_000044.3	155	gAg/gTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976800	2976800	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073672-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			298	214	423	0	ENST00000396946.4:c.1212G>C	p.Arg404Ser	p.R404S	ENST00000396946	NM_032415.4	404	agG/agC																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022326	31022326	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073672-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			707	152	490	0	ENST00000375687.4:c.1811C>G	p.Ser604Cys	p.S604C	ENST00000375687	NM_015338.5	604	tCc/tGc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30312975	30312975	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073672-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			476	88	392	0	ENST00000262643.3:c.778A>C	p.Asn260His	p.N260H	ENST00000262643	NM_001238.2	260	Aat/Cat																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211289	36211289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073672-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1799	208	440	0	ENST00000222270.7:c.1040G>T	p.Gly347Val	p.G347V	ENST00000222270	NM_014727.1	347	gGa/gTa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371984	55371984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073672-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			576	142	394	0	ENST00000297316.4:c.677del	p.Pro226ArgfsTer161	p.P226Rfs*161	ENST00000297316	NM_022454.3	225	tCc/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579521	7579521	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	121	517	0	ENST00000269305.4:c.166del	p.Glu56LysfsTer67	p.E56Kfs*67	ENST00000269305	NM_001126112.2	56	Gaa/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0073828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	104	315	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99185101	99185101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	113	365	0	ENST00000074304.5:c.2503G>A	p.Glu835Lys	p.E835K	ENST00000074304	NM_001134224.1	835	Gag/Aag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880913	134880913	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	114	368	0	ENST00000398015.3:c.1476G>T	p.Arg492Ser	p.R492S	ENST00000398015	NM_004441.4	492	agG/agT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0073831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	62	350	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913343		P-0073831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	76	506	0	ENST00000269305.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000269305	NM_001126112.2	273	Cgt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0073831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	64	430	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
BCOR	54880	MSKCC	GRCh37	X	39931685	39931686	+	missense_variant	Missense_Mutation	DNP	AA	AA	CC			P-0073831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	10	216	0	ENST00000378444.4:c.2913_2914delinsGG	p.Tyr972Asp	p.Y972D	ENST00000378444	NM_001123385.1	971	ggTTac/ggGGac																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0073654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	78	336	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720875	89720875	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0073654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	22	81	0	ENST00000371953.3:c.1026G>T	p.Lys342Asn	p.K342N	ENST00000371953	NM_000314.4	342	aaG/aaT																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46268410	46268410	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	65	353	0	ENST00000371998.3:c.2797A>G	p.Met933Val	p.M933V	ENST00000371998		933	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs587780074		P-0073640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	417	369	0	ENST00000269305.4:c.737T>G	p.Met246Arg	p.M246R	ENST00000269305	NM_001126112.2	246	aTg/aGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0073640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	438	271	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	11	173	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	222	454	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087503	27087503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			708	154	445	0	ENST00000324856.7:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000324856	NM_006015.4	693	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913288		P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	43	330	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436867	110436867	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367592112		P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	96	403	0	ENST00000375856.3:c.1534G>A	p.Ala512Thr	p.A512T	ENST00000375856	NM_003749.2	512	Gcc/Acc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	41	177	0	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta																																																																															
CIC	23152	MSKCC	GRCh37	19	42799131	42799131	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	67	290	0	ENST00000575354.2:c.4620del	p.Thr1541LeufsTer79	p.T1541Lfs*79	ENST00000575354	NM_015125.3	1539	Ccc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	140	381	0	ENST00000269305.4:c.797del	p.Gly266AspfsTer79	p.G266Dfs*79	ENST00000269305	NM_001126112.2	266	gGa/ga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056244	27056244	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	64	358	0	ENST00000324856.7:c.1240G>T	p.Gly414Ter	p.G414*	ENST00000324856	NM_006015.4	414	Gga/Tga																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	51	281	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069193	5069193	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	48	257	0	ENST00000381652.3:c.1502del	p.Pro501GlnfsTer10	p.P501Qfs*10	ENST00000381652	NM_004972.3	500	Ccc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	165	464	3	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015109	37015109	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	39	353	0	ENST00000358127.4:c.295del	p.Ile99SerfsTer60	p.I99Sfs*60	ENST00000358127	NM_001280556.1	99	Atc/tc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435262	110435263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	140	502	0	ENST00000375856.3:c.3138dup	p.Ala1047ArgfsTer25	p.A1047Rfs*25	ENST00000375856	NM_003749.2	1046	-/C																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527741	157527742	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			764	88	331	2	ENST00000346085.5:c.5471dup	p.Asp1825Ter	p.D1825*	ENST00000346085	NM_020732.3	1822	-/G																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347992	89347992	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	34	358	0	ENST00000301030.4:c.4958del	p.Lys1653SerfsTer33	p.K1653Sfs*33	ENST00000301030	NM_001256183.1	1653	aAg/ag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864679	68864679	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	68	251	0	ENST00000288368.4:c.50T>C	p.Leu17Pro	p.L17P	ENST00000288368	NM_024870.2	17	cTg/cCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916921	178916921	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	36	274	0	ENST00000263967.3:c.308A>G	p.Glu103Gly	p.E103G	ENST00000263967	NM_006218.2	103	gAa/gGa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211611	36211611	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	87	339	0	ENST00000222270.7:c.1362G>T	p.Glu454Asp	p.E454D	ENST00000222270	NM_014727.1	454	gaG/gaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	53	228	0	ENST00000256078.4:c.34_35delinsCT	p.Gly12Leu	p.G12L	ENST00000256078	NM_033360.2	12	GGt/CTt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219929	36219929	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			711	113	492	0	ENST00000222270.7:c.4735del	p.Arg1579ValfsTer67	p.R1579Vfs*67	ENST00000222270	NM_014727.1	1577	gaC/ga																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187221	38187222	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	88	328	1	ENST00000317025.8:c.1255dup	p.Thr419AsnfsTer28	p.T419Nfs*28	ENST00000317025	NM_023034.1	419	acc/aAcc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914593	32914593	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80358849		P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	84	364	0	ENST00000380152.3:c.6101G>A	p.Arg2034His	p.R2034H	ENST00000380152		2034	cGt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524466	187524466	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	101	333	0	ENST00000441802.2:c.11214C>A	p.Cys3738Ter	p.C3738*	ENST00000441802	NM_005245.3	3738	tgC/tgA																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434551	110434551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	33	385	0	ENST00000375856.3:c.3850T>C	p.Trp1284Arg	p.W1284R	ENST00000375856	NM_003749.2	1284	Tgg/Cgg																																																																															
BLM	641	MSKCC	GRCh37	15	91308641	91308641	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	17	196	0	ENST00000355112.3:c.2190G>T	p.Leu730Phe	p.L730F	ENST00000355112	NM_000057.2	730	ttG/ttT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859855	151859855	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1476246735		P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	130	417	0	ENST00000262189.6:c.10807A>G	p.Lys3603Glu	p.K3603E	ENST00000262189	NM_170606.2	3603	Aaa/Gaa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026418	6026418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	41	82	0	ENST00000265849.7:c.1978G>A	p.Ala660Thr	p.A660T	ENST00000265849	NM_000535.5	660	Gcc/Acc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206664181	206664181	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	58	314	0	ENST00000367120.3:c.1723A>G	p.Lys575Glu	p.K575E	ENST00000367120	NM_014002.3	575	Aag/Gag																																																																															
EP300	2033	MSKCC	GRCh37	22	41574716	41574716	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			774	108	467	0	ENST00000263253.7:c.7001A>G	p.Gln2334Arg	p.Q2334R	ENST00000263253	NM_001429.3	2334	cAg/cGg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11182080	11182080	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	58	296	0	ENST00000361445.4:c.6766A>G	p.Lys2256Glu	p.K2256E	ENST00000361445	NM_004958.3	2256	Aag/Gag																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816596	32816597	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	150	405	0	ENST00000354258.4:c.1578dup	p.Arg527GlnfsTer14	p.R527Qfs*14	ENST00000354258	NM_000593.5	526	-/C																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260079	19260080	+	missense_variant	Missense_Mutation	DNP	AC	AC	CT			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	129	357	0	ENST00000162023.5:c.213_214delinsAG	p.Tyr72Asp	p.Y72D	ENST00000162023		71	gaGTac/gaAGac																																																																															
CDH1	999	MSKCC	GRCh37	16	68849488	68849488	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	147	367	0	ENST00000261769.5:c.1391T>C	p.Val464Ala	p.V464A	ENST00000261769	NM_004360.3	464	gTc/gCc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686395	30686395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	132	424	0	ENST00000359013.4:c.326G>C	p.Cys109Ser	p.C109S	ENST00000359013	NM_001024847.2	109	tGt/tCt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121438984	121438984	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	68	340	0	ENST00000257555.6:c.1885T>A	p.Ser629Thr	p.S629T	ENST00000257555		629	Tcc/Acc																																																																															
ERG	2078	MSKCC	GRCh37	21	39755648	39755648	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	118	401	0	ENST00000288319.7:c.1117T>C	p.Tyr373His	p.Y373H	ENST00000288319	NM_182918.3	373	Tat/Cat																																																																															
EP300	2033	MSKCC	GRCh37	22	41574064	41574064	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	85	377	0	ENST00000263253.7:c.6349A>G	p.Thr2117Ala	p.T2117A	ENST00000263253	NM_001429.3	2117	Acc/Gcc																																																																															
BARD1	580	MSKCC	GRCh37	2	215645351	215645351	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	74	364	0	ENST00000260947.4:c.1247T>C	p.Leu416Pro	p.L416P	ENST00000260947	NM_000465.2	416	cTg/cCg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864385	162864385	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	46	296	0	ENST00000366898.1:c.128T>C	p.Val43Ala	p.V43A	ENST00000366898	NM_004562.2	43	gTg/gCg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775623976		P-0073644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	137	337	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473672	67473672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	124	419	0	ENST00000327367.4:c.752C>T	p.Ser251Leu	p.S251L	ENST00000327367	NM_005902.3	251	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0073644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	79	231	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157150487	157150487	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749006707		P-0073644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	133	436	1	ENST00000346085.5:c.1669C>T	p.Arg557Trp	p.R557W	ENST00000346085	NM_020732.3	557	Cgg/Tgg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753854	42753854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	159	516	0	ENST00000222329.4:c.410C>T	p.Ser137Leu	p.S137L	ENST00000222329	NM_006494.2	137	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0073648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	41	266	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106462	27106462	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0073648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	56	521	0	ENST00000324856.7:c.6073A>T	p.Lys2025Ter	p.K2025*	ENST00000324856	NM_006015.4	2025	Aag/Tag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127783	64127784	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0073648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	44	372	1	ENST00000334205.4:c.276_277delinsTT	p.Arg93Cys	p.R93C	ENST00000334205	NM_003942.2	92	gtGCgc/gtTTgc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986515	36986515	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	63	527	0	ENST00000354822.5:c.1174T>G	p.Cys392Gly	p.C392G	ENST00000354822	NM_001079668.2	392	Tgc/Ggc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986523	36986527	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCC	GTGCC	-			P-0073648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	60	529	0	ENST00000354822.5:c.1162_1166del	p.Gly388HisfsTer49	p.G388Hfs*49	ENST00000354822	NM_001079668.2	388	GGCACc/c																																																																															
IL7R	3575	MSKCC	GRCh37	5	35861037	35861037	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	57	428	0	ENST00000303115.3:c.166A>G	p.Thr56Ala	p.T56A	ENST00000303115	NM_002185.3	56	Acc/Gcc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0073649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	47	430	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584542	48584542	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0073649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	39	422	0	ENST00000342988.3:c.715C>T	p.Gln239Ter	p.Q239*	ENST00000342988	NM_005359.5	239	Cag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039416	47039416	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	57	427	0	ENST00000329236.7:c.808T>G	p.Phe270Val	p.F270V	ENST00000329236	NM_001204466.1	270	Ttc/Gtc																																																																															
HGF	3082	MSKCC	GRCh37	7	81334996	81334996	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	46	361	0	ENST00000222390.5:c.1831A>G	p.Ser611Gly	p.S611G	ENST00000222390	NM_000601.4	611	Agt/Ggt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0073028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	150	229	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0073028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	239	498	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974787	21974788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0073028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	217	367	0	ENST00000304494.5:c.39dup	p.Asp14Ter	p.D14*	ENST00000304494	NM_000077.4	13	-/T																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103519135	103519135	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1372499985		P-0073363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	149	237	1	ENST00000355739.4:c.2478del	p.Phe826LeufsTer7	p.F826Lfs*7	ENST00000355739	NM_000123.3	825	Ttt/tt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274213	10274213	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1302734897		P-0073363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			462	129	232	0	ENST00000330684.3:c.56G>A	p.Arg19His	p.R19H	ENST00000330684	NM_001134407.1	19	cGc/cAc																																																																															
ERF	2077	MSKCC	GRCh37	19	42754492	42754492	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758855122		P-0073363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			584	210	317	0	ENST00000222329.4:c.248G>A	p.Arg83Gln	p.R83Q	ENST00000222329	NM_006494.2	83	cGg/cAg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702191	47702191	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs41295288		P-0073551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	139	372	0	ENST00000233146.2:c.1787A>G	p.Asn596Ser	p.N596S	ENST00000233146	NM_000251.2	596	aAt/aGt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038901	12038902	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0073551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	66	433	0	ENST00000396373.4:c.1196_1197del	p.Arg399ProfsTer26	p.R399Pfs*26	ENST00000396373	NM_001987.4	398	ctGCgc/ctgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151846084	151846084	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	107	468	0	ENST00000262189.6:c.12928C>G	p.Pro4310Ala	p.P4310A	ENST00000262189	NM_170606.2	4310	Cct/Gct																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061190	38061191	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	18	479	0	ENST00000250448.2:c.798dup	p.Lys267GlnfsTer26	p.K267Qfs*26	ENST00000250448	NM_004496.3	266	-/C																																																																															
ERG	2078	MSKCC	GRCh37	21	39755419	39755517	+	inframe_deletion	In_Frame_Del	DEL	GGGGCAGCAAAAAAACTGGAAGATGTCACGGGGAGGGCTGGAGGGTGGGGCGCCACAAAGTTCATCTTCTGTGGGTGGGCGTGATAGGAGCCCATGTAC	GGGGCAGCAAAAAAACTGGAAGATGTCACGGGGAGGGCTGGAGGGTGGGGCGCCACAAAGTTCATCTTCTGTGGGTGGGCGTGATAGGAGCCCATGTAC	-			P-0073551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	90	581	0	ENST00000288319.7:c.1248_1346del	p.Tyr417_Pro449del	p.Y417_P449del	ENST00000288319	NM_182918.3	416	ccGTACATGGGCTCCTATCACGCCCACCCACAGAAGATGAACTTTGTGGCGCCCCACCCTCCAGCCCTCCCCGTGACATCTTCCAGTTTTTTTGCTGCCCCa/cca																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710906	117710906	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	75	477	0	ENST00000368508.3:c.1366A>C	p.Lys456Gln	p.K456Q	ENST00000368508	NM_002944.2	456	Aag/Cag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189497	56189497	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	34	426	1	ENST00000399503.3:c.4529C>A	p.Thr1510Asn	p.T1510N	ENST00000399503	NM_005921.1	1510	aCt/aAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438208	49438209	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0073554-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	172	429	0	ENST00000301067.7:c.5060dup	p.Lys1688GlnfsTer3	p.K1688Qfs*3	ENST00000301067	NM_003482.3	1687	cgc/cgGc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061192	38061193	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGCGC			P-0073554-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	198	555	0	ENST00000250448.2:c.792_796dup	p.Phe266CysfsTer57	p.F266Cfs*57	ENST00000250448	NM_004496.3	266	ttc/tGCGCTtc																																																																															
AR	367	MSKCC	GRCh37	X	66931252	66931260	+	inframe_deletion	In_Frame_Del	DEL	CTGAAGAAA	CTGAAGAAA	-			P-0073554-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	177	209	0	ENST00000374690.3:c.1896_1904del	p.Lys633_Leu635del	p.K633_L635del	ENST00000374690	NM_000044.3	632	CTGAAGAAA/-																																																																															
RAD52	5893	MSKCC	GRCh37	12	1034641	1034641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	204	327	0	ENST00000358495.3:c.518G>T	p.Arg173Ile	p.R173I	ENST00000358495	NM_134424.2	173	aGa/aTa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0073660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	61	374	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0073660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	34	231	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803121	32803121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	31	359	0	ENST00000374899.4:c.755G>A	p.Arg252Gln	p.R252Q	ENST00000374899	NM_018833.2	252	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577565	7577566	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0073660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	49	295	0	ENST00000269305.4:c.714_715dup	p.Asn239IlefsTer9	p.N239Ifs*9	ENST00000269305	NM_001126112.2	239	aac/aTAac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0072891-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			169	37	198	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0072891-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			262	149	367	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711876	89711876	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0072891-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			277	64	284	0	ENST00000371953.3:c.494G>A	p.Gly165Glu	p.G165E	ENST00000371953	NM_000314.4	165	gGa/gAa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180949	32180949	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369297005		P-0072891-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			338	67	414	0	ENST00000375023.3:c.2401C>T	p.Arg801Cys	p.R801C	ENST00000375023	NM_004557.3	801	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591898	48591898	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072891-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			288	69	447	0	ENST00000342988.3:c.1061T>G	p.Val354Gly	p.V354G	ENST00000342988	NM_005359.5	354	gTg/gGg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599970	10599970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749651891		P-0072891-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			605	69	484	0	ENST00000171111.5:c.1606C>T	p.Arg536Cys	p.R536C	ENST00000171111	NM_203500.1	536	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112174873	112174874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0072891-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			275	75	389	0	ENST00000257430.4:c.3586dup	p.Ser1196PhefsTer12	p.S1196Ffs*12	ENST00000257430	NM_000038.5	1194	-/T																																																																															
BRCA2	675	MSKCC	GRCh37	13	32945130	32945130	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80359105		P-0072891-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			248	59	262	0	ENST00000380152.3:c.8525G>A	p.Arg2842His	p.R2842H	ENST00000380152		2842	cGc/cAc																																																																															
POT1	25913	MSKCC	GRCh37	7	124499043	124499043	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202187871		P-0073304-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	32	270	0	ENST00000357628.3:c.670G>A	p.Asp224Asn	p.D224N	ENST00000357628	NM_015450.2	224	Gat/Aat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038760	47038760	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073304-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	24	418	0	ENST00000329236.7:c.536A>T	p.Gln179Leu	p.Q179L	ENST00000329236	NM_001204466.1	179	cAg/cTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32950851	32950853	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0073304-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	50	333	0	ENST00000380152.3:c.8679_8681del	p.Gln2894del	p.Q2894del	ENST00000380152		2893	CAG/-																																																																															
POLE	5426	MSKCC	GRCh37	12	133218257	133218264	+	frameshift_variant	Frame_Shift_Del	DEL	GTCTCATC	GTCTCATC	-			P-0073304-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	35	392	0	ENST00000320574.5:c.5347_5354del	p.Asp1783SerfsTer5	p.D1783Sfs*5	ENST00000320574	NM_006231.2	1783	GATGAGACa/a																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423101	47423101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073304-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	50	457	0	ENST00000404338.3:c.1169C>G	p.Ala390Gly	p.A390G	ENST00000404338	NM_004491.4	390	gCc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0073503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	78	380	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2985558	2985558	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			770	101	391	0	ENST00000396946.4:c.253C>A	p.Gln85Lys	p.Q85K	ENST00000396946	NM_032415.4	85	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0073504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	255	649	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
PGR	5241	MSKCC	GRCh37	11	100933286	100933286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	159	437	0	ENST00000325455.5:c.2104G>A	p.Gly702Arg	p.G702R	ENST00000325455	NM_001202474.3	702	Gga/Aga																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154769	2154769	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	237	591	0	ENST00000434045.2:c.452C>A	p.Ser151Ter	p.S151*	ENST00000434045	NM_001127598.1	151	tCg/tAg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056104	26056148	+	inframe_deletion	In_Frame_Del	DEL	CTTTCTTGGGCTTCGCAACCTTGGCCTTCTTTGGGCTCTTAGCCA	CTTTCTTGGGCTTCGCAACCTTGGCCTTCTTTGGGCTCTTAGCCA	-			P-0073504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			773	459	536	0	ENST00000343677.2:c.509_553del	p.Val170_Lys184del	p.V170_K184del	ENST00000343677	NM_005319.3	170	gTGGCTAAGAGCCCAAAGAAGGCCAAGGTTGCGAAGCCCAAGAAAGct/gct																																																																															
NUP93	9688	MSKCC	GRCh37	16	56878465	56878465	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	269	484	0	ENST00000308159.5:c.2404C>G	p.Arg802Gly	p.R802G	ENST00000308159	NM_014669.4	802	Cga/Gga																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873732	35873733	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0073504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	218	443	0	ENST00000216797.5:c.118dup	p.Glu40GlyfsTer46	p.E40Gfs*46	ENST00000216797	NM_020529.2	40	gag/gGag																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125497545	125497545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	203	331	0	ENST00000428830.2:c.109G>A	p.Val37Met	p.V37M	ENST00000428830	NM_001114121.2	37	Gtg/Atg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426636	47426636	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	234	575	0	ENST00000377045.4:c.881T>G	p.Leu294Arg	p.L294R	ENST00000377045	NM_001654.4	294	cTg/cGg																																																																															
NF2	4771	MSKCC	GRCh37	22	30032865	30032865	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0073504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	240	477	0	ENST00000338641.4:c.240G>T	p.Lys80Asn	p.K80N	ENST00000338641	NM_000268.3	80	aaG/aaT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098706	47099138	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCAGGAGCACCTTTCCAGCATTAGGGTTGCTGGGATCCACATAGGCCTGCATGGGATAACCTGGTGGGTAACCAGCAAAGGGATGATGCGGGGCATTATAACCAAGAGAGTCATAGGGCAGTGGTGATGTCATTCCCAGGTTCTGCATCTGTTGCTGTTGTTTCTGAGCCTCCCGTTGAGCCACCTCTTGCTCAAACAACTTCCGGCGTTCCTCTGTAGAAAGTTTATTGCGGTCTTTAATTCGTACTTTCTTTTTAGAAGTTGGTGTATCATATCTAGAAAGAAAATAAGGACCACAAAAAGTTGCTCCCTAAATCATAGACACAATCAAAGCACTAATAAGTATTATGTCACTCATGACTAAACCACTAACCACATCAAACCCTATTTGGCACTGGTTTACAACTATACTCAAAATTACTCAGCTTGTCTT	GCAGGAGCACCTTTCCAGCATTAGGGTTGCTGGGATCCACATAGGCCTGCATGGGATAACCTGGTGGGTAACCAGCAAAGGGATGATGCGGGGCATTATAACCAAGAGAGTCATAGGGCAGTGGTGATGTCATTCCCAGGTTCTGCATCTGTTGCTGTTGTTTCTGAGCCTCCCGTTGAGCCACCTCTTGCTCAAACAACTTCCGGCGTTCCTCTGTAGAAAGTTTATTGCGGTCTTTAATTCGTACTTTCTTTTTAGAAGTTGGTGTATCATATCTAGAAAGAAAATAAGGACCACAAAAAGTTGCTCCCTAAATCATAGACACAATCAAAGCACTAATAAGTATTATGTCACTCATGACTAAACCACTAACCACATCAAACCCTATTTGGCACTGGTTTACAACTATACTCAAAATTACTCAGCTTGTCTT	-			P-0073504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	146	624	0	ENST00000409792.3:c.6294-158_6568del		p.X2098_splice	ENST00000409792	NM_014159.6	2098																																																																																
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397516896		P-0072445-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			177	52	318	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950205	38950205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072445-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			345	49	514	0	ENST00000357387.3:c.3745G>A	p.Asp1249Asn	p.D1249N	ENST00000357387	NM_152756.3	1249	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0072445-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			160	35	291	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950412	38950611	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCAATGCTTGGTGTACTACCAGTGTCTTCAATGTGCTTATTCCCCATAAATGAAGTCTCTAATTGTAATGTTTTCTGTACAGTGGATATGGGTGTAAAATCATCACTATGATTAAAATCAACACTGGGCTCCGTAAGTGTTCTGATTCGCCTGTTGCTTGTCTTACTTTCAGATGATAATTTCCCTCCTTTTGGATCA	CTCCAATGCTTGGTGTACTACCAGTGTCTTCAATGTGCTTATTCCCCATAAATGAAGTCTCTAATTGTAATGTTTTCTGTACAGTGGATATGGGTGTAAAATCATCACTATGATTAAAATCAACACTGGGCTCCGTAAGTGTTCTGATTCGCCTGTTGCTTGTCTTACTTTCAGATGATAATTTCCCTCCTTTTGGATCA	-			P-0072445-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			246	74	468	0	ENST00000357387.3:c.3339_3538del	p.Ser1113ArgfsTer3	p.S1113Rfs*3	ENST00000357387	NM_152756.3	1113	agTGATCCAAAAGGAGGGAAATTATCATCTGAAAGTAAGACAAGCAACAGGCGAATCAGAACACTTACGGAGCCCAGTGTTGATTTTAATCATAGTGATGATTTTACACCCATATCCACTGTACAGAAAACATTACAATTAGAGACTTCATTTATGGGGAATAAGCACATTGAAGACACTGGTAGTACACCAAGCATTGGAGaa/agaa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220377	1220377	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			737	39	407	0	ENST00000326873.7:c.470T>G	p.Phe157Cys	p.F157C	ENST00000326873	NM_000455.4	157	tTc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0073029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	14	263	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0073374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	144	640	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21627799	21627799	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	57	422	0	ENST00000421138.2:c.1331T>C	p.Val444Ala	p.V444A	ENST00000421138		444	gTa/gCa																																																																															
NF1	4763	MSKCC	GRCh37	17	29685504	29685504	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	68	440	0	ENST00000358273.4:c.7977T>A	p.Asn2659Lys	p.N2659K	ENST00000358273	NM_001042492.2	2659	aaT/aaA																																																																															
RB1	5925	MSKCC	GRCh37	13	49037865	49037865	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0073478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			41	50	256	0	ENST00000267163.4:c.2107-2A>G		p.X703_splice	ENST00000267163	NM_000321.2	703																																																																																
PTEN	5728	MSKCC	GRCh37	10	89720809	89720809	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			29	14	123	0	ENST00000371953.3:c.961del	p.Thr321GlnfsTer23	p.T321Qfs*23	ENST00000371953	NM_000314.4	320	ttA/tt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843676	156843676	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866261145		P-0073478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	129	561	0	ENST00000524377.1:c.1102G>A	p.Gly368Ser	p.G368S	ENST00000524377	NM_002529.3	368	Ggc/Agc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2214506	2214513	+	frameshift_variant	Frame_Shift_Del	DEL	GCCACGCT	GCCACGCT	-			P-0073478-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	118	415	0	ENST00000398665.3:c.1835_1842del	p.Ala612ValfsTer52	p.A612Vfs*52	ENST00000398665	NM_032482.2	612	GCCACGCTg/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0072018-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			548	102	420	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061224	38061229	+	inframe_deletion	In_Frame_Del	DEL	CTCGAA	CTCGAA	-			P-0072018-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	45	434	2	ENST00000250448.2:c.760_765del	p.Phe254_Glu255del	p.F254_E255del	ENST00000250448	NM_004496.3	254	TTCGAG/-																																																																															
AKT1	207	MSKCC	GRCh37	14	105239420	105239420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072018-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			471	67	517	0	ENST00000349310.3:c.967G>A	p.Asp323Asn	p.D323N	ENST00000349310	NM_001014432.1	323	Gac/Aac																																																																															
ATM	472	MSKCC	GRCh37	11	108178712	108178712	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs869312756		P-0072018-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			457	63	290	0	ENST00000278616.4:c.5762+1G>T		p.X1921_splice	ENST00000278616	NM_000051.3	1921																																																																																
MEN1	4221	MSKCC	GRCh37	11	64572567	64572567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072018-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			949	63	604	0	ENST00000337652.1:c.1304C>T	p.Pro435Leu	p.P435L	ENST00000337652	NM_130803.2	435	cCt/cTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862749	9862749	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150316865		P-0072444-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			362	30	275	0	ENST00000330684.3:c.2554G>A	p.Val852Met	p.V852M	ENST00000330684	NM_001134407.1	852	Gtg/Atg																																																																															
NF1	4763	MSKCC	GRCh37	17	29533272	29533272	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0072444-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			361	33	309	0	ENST00000358273.4:c.1275G>A	p.Trp425Ter	p.W425*	ENST00000358273	NM_001042492.2	425	tgG/tgA																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463541	25463541	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs367909007		P-0072968-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			418	16	435	0	ENST00000264709.3:c.2141C>G	p.Ser714Cys	p.S714C	ENST00000264709	NM_175629.2	714	tCc/tGc																																																																															
ATRX	546	MSKCC	GRCh37	X	76939522	76939522	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072968-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			248	16	188	0	ENST00000373344.5:c.1226T>C	p.Leu409Ser	p.L409S	ENST00000373344	NM_000489.3	409	tTg/tCg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25990541	25990541	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072968-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			348	20	350	0	ENST00000435504.4:c.686del	p.Asn229ThrfsTer15	p.N229Tfs*15	ENST00000435504		229	aAc/ac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0073007-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	14	356	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0073007-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	9	204	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230492810	230492810	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148878203		P-0073007-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	19	338	0	ENST00000525115.1:c.382C>T	p.Arg128Cys	p.R128C	ENST00000525115		128	Cgc/Tgc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929270	44929270	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073007-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	14	322	0	ENST00000377967.4:c.2370del	p.Asn790LysfsTer77	p.N790Kfs*77	ENST00000377967	NM_021140.2	790	aaC/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023156	27023170	+	inframe_deletion	In_Frame_Del	DEL	GCCGGCAGCGGCGGC	GCCGGCAGCGGCGGC	-			P-0073007-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	14	287	0	ENST00000324856.7:c.263_277del	p.Ala88_Gly92del	p.A88_G92del	ENST00000324856	NM_006015.4	88	GCCGGCAGCGGCGGC/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0073410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	129	324	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0073410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	200	326	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0073410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	44	155	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175926	112175926	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	24	435	0	ENST00000257430.4:c.4637del	p.Asn1546MetfsTer19	p.N1546Mfs*19	ENST00000257430	NM_000038.5	1545	tcA/tc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434983	49434983	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	160	408	0	ENST00000301067.7:c.6570del	p.Thr2191ArgfsTer73	p.T2191Rfs*73	ENST00000301067	NM_003482.3	2190	ccC/cc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226007	53226007	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	180	199	0	ENST00000375401.3:c.2842G>C	p.Ala948Pro	p.A948P	ENST00000375401	NM_004187.3	948	Gct/Cct																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485974	8485974	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs184229513		P-0073410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	200	393	0	ENST00000356435.5:c.2843A>G	p.Asn948Ser	p.N948S	ENST00000356435		948	aAt/aGt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0073415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	30	364	0				ENST00000310581	NM_198253.2																																																																																	
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0073415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	50	289	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CTR9	9646	MSKCC	GRCh37	11	10794202	10794202	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0073415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	33	323	0	ENST00000361367.2:c.2580G>T	p.Gln860His	p.Q860H	ENST00000361367	NM_014633.3	860	caG/caT																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363114	40363114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	25	350	0	ENST00000397332.2:c.1115C>T	p.Thr372Ile	p.T372I	ENST00000397332	NM_001033082.2	372	aCa/aTa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21619829	21619829	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771336625		P-0073415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	19	301	0	ENST00000382592.4:c.337G>A	p.Asp113Asn	p.D113N	ENST00000382592	NM_014572.2	113	Gac/Aac																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346013	73346013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	55	297	0	ENST00000377767.4:c.1525G>T	p.Val509Leu	p.V509L	ENST00000377767	NM_014953.3	509	Gtg/Ttg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18644431	18644431	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	25	336	0	ENST00000266497.5:c.2609A>T	p.Asp870Val	p.D870V	ENST00000266497		870	gAt/gTt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530151	63530151	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	24	320	0	ENST00000307078.5:c.2284A>G	p.Ser762Gly	p.S762G	ENST00000307078	NM_004655.3	762	Agt/Ggt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0073448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	42	234	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576857	7576858	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	77	424	0	ENST00000269305.4:c.988dup	p.Leu330ProfsTer7	p.L330Pfs*7	ENST00000269305	NM_001126112.2	330	ctt/cCtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0073450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	296	305	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0073450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	334	417	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0073450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	343	236	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0073453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	25	196	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
AR	367	MSKCC	GRCh37	X	66931400	66931400	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	44	202	0	ENST00000374690.3:c.2042T>C	p.Ile681Thr	p.I681T	ENST00000374690	NM_000044.3	681	aTt/aCt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0073521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	354	379	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111188	193111189	+	missense_variant	Missense_Mutation	DNP	AC	AC	GA			P-0073521-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			744	125	421	0	ENST00000367435.3:c.721_722delinsGA	p.Thr241Glu	p.T241E	ENST00000367435	NM_024529.4	241	ACa/GAa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775623976		P-0073524-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	39	418	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409801	139409801	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758837712		P-0073526-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	202	319	0	ENST00000277541.6:c.1955C>T	p.Ser652Leu	p.S652L	ENST00000277541	NM_017617.3	652	tCg/tTg																																																																															
ATM	472	MSKCC	GRCh37	11	108178687	108178688	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	GGACTA			P-0073526-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	150	297	0	ENST00000278616.4:c.5739_5744dup	p.Asp1914_Tyr1915insTer	p.D1914_Y1915ins*	ENST00000278616	NM_000051.3	1913	gtg/gtGGACTAg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45422896	45422896	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073526-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	144	272	0	ENST00000262160.6:c.232C>G	p.Pro78Ala	p.P78A	ENST00000262160	NM_005901.5	78	Cca/Gca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0073527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	124	408	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	128	552	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
NPM1	4869	MSKCC	GRCh37	5	170818749	170818749	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	26	177	0	ENST00000296930.5:c.298T>G	p.Leu100Val	p.L100V	ENST00000296930	NM_002520.6	100	Tta/Gta																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341220	8341220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	42	366	0	ENST00000356435.5:c.4996C>T	p.Leu1666Phe	p.L1666F	ENST00000356435		1666	Ctt/Ttt																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158449	26158449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			787	57	416	0	ENST00000289316.2:c.52G>A	p.Ala18Thr	p.A18T	ENST00000289316	NM_138720.2	18	Gcg/Acg																																																																															
USP8	9101	MSKCC	GRCh37	15	50782017	50782017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	31	294	2	ENST00000307179.4:c.1910C>T	p.Thr637Ile	p.T637I	ENST00000307179		637	aCa/aTa																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0073529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	425	341	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8105965	8105965	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	382	426	0	ENST00000346208.3:c.785A>T	p.Glu262Val	p.E262V	ENST00000346208		262	gAg/gTg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645408	67645408	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	407	431	0	ENST00000264010.4:c.673G>T	p.Val225Phe	p.V225F	ENST00000264010	NM_006565.3	225	Gtc/Ttc																																																																															
RET	5979	MSKCC	GRCh37	10	43597997	43597997	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			838	175	572	0	ENST00000355710.3:c.545C>A	p.Pro182Gln	p.P182Q	ENST00000355710	NM_020975.4	182	cCa/cAa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2130219	2130219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			705	118	533	0	ENST00000219476.3:c.3451G>T	p.Gly1151Cys	p.G1151C	ENST00000219476	NM_000548.3	1151	Ggc/Tgc																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778209	27778209	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			941	160	644	0	ENST00000369163.2:c.358A>C	p.Ile120Leu	p.I120L	ENST00000369163	NM_003536.2	120	Atc/Ctc																																																																															
AKT2	208	MSKCC	GRCh37	19	40740958	40740958	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073531-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	126	585	0	ENST00000392038.2:c.1360G>T	p.Asp454Tyr	p.D454Y	ENST00000392038	NM_001626.4	454	Gac/Tac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56434959	56434959	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038518-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			844	141	408	0	ENST00000407977.2:c.2178G>T	p.Trp726Cys	p.W726C	ENST00000407977		726	tgG/tgT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730858	40730858	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200227405		P-0038518-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			514	97	405	0	ENST00000373198.4:c.3677G>A	p.Arg1226Gln	p.R1226Q	ENST00000373198	NM_133170.3	1226	cGa/cAa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206833	36206833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038518-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			685	143	345	0	ENST00000300305.3:c.679G>A	p.Glu227Lys	p.E227K	ENST00000300305		227	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038518-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			148	120	165	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59924520	59924520	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038518-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			355	54	251	0	ENST00000259008.2:c.569G>T	p.Gly190Val	p.G190V	ENST00000259008	NM_032043.2	190	gGa/gTa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265591	152265591	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038518-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			366	87	343	0	ENST00000206249.3:c.1044C>A	p.Asn348Lys	p.N348K	ENST00000206249	NM_000125.3	348	aaC/aaA																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11114065	11114065	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038518-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			371	86	298	0	ENST00000344626.4:c.1993G>C	p.Glu665Gln	p.E665Q	ENST00000344626	NM_003072.3	665	Gag/Cag																																																																															
RARA	5914	MSKCC	GRCh37	17	38508608	38508608	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038518-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			788	86	344	0	ENST00000254066.5:c.656C>G	p.Ser219Cys	p.S219C	ENST00000254066	NM_000964.3	219	tCt/tGt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730055	41730055	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038518-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			526	88	338	0	ENST00000242208.4:c.474C>A	p.Phe158Leu	p.F158L	ENST00000242208	NM_002192.2	158	ttC/ttA																																																																															
JAK1	3716	MSKCC	GRCh37	1	65307003	65307003	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072690-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			492	8	0	0	ENST00000342505.4:c.2574A>C	p.Glu858Asp	p.E858D	ENST00000342505	NM_002227.2	858	gaA/gaC																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880997	37880997	+	protein_altering_variant	In_Frame_Ins	INS	G	G	TTGT			P-0072690-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			604	21	338	0	ENST00000269571.5:c.2326delinsTTGT	p.Gly776delinsLeuCys	p.G776delinsLC	ENST00000269571		776	Ggt/TTGTgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0073351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	106	296	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061327	38061327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	357	342	2	ENST00000250448.2:c.662C>T	p.Ser221Leu	p.S221L	ENST00000250448	NM_004496.3	221	tCg/tTg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060883	38060883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	439	317	0	ENST00000250448.2:c.1106C>T	p.Ser369Phe	p.S369F	ENST00000250448	NM_004496.3	369	tCt/tTt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061621	38061621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	308	310	0	ENST00000250448.2:c.368C>T	p.Ser123Phe	p.S123F	ENST00000250448	NM_004496.3	123	tCc/tTc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741512	145741512	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	142	409	0	ENST00000428558.2:c.991G>T	p.Gly331Trp	p.G331W	ENST00000428558	NM_004260.3	331	Ggg/Tgg																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50479273	50479273	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	136	242	0	ENST00000394963.4:c.121G>T	p.Gly41Cys	p.G41C	ENST00000394963	NM_003076.4	41	Ggc/Tgc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161194	56161194	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	147	255	0	ENST00000399503.3:c.1063T>A	p.Cys355Ser	p.C355S	ENST00000399503	NM_005921.1	355	Tgt/Agt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061013	38061013	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs926719052		P-0073351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	347	316	0	ENST00000250448.2:c.976C>T	p.Pro326Ser	p.P326S	ENST00000250448	NM_004496.3	326	Ccc/Tcc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061870	38061870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	431	352	0	ENST00000250448.2:c.119C>T	p.Ser40Phe	p.S40F	ENST00000250448	NM_004496.3	40	tCc/tTc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061882	38061882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	409	352	0	ENST00000250448.2:c.107C>T	p.Ser36Leu	p.S36L	ENST00000250448	NM_004496.3	36	tCa/tTa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660448	227660448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	162	367	0	ENST00000305123.5:c.3007G>A	p.Asp1003Asn	p.D1003N	ENST00000305123	NM_005544.2	1003	Gac/Aac																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56174873	56174873	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	GGG			P-0073351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	113	293	0	ENST00000399503.3:c.2032delinsGGG	p.Arg678GlyfsTer8	p.R678Gfs*8	ENST00000399503	NM_005921.1	678	Aga/GGGga																																																																															
MED12	9968	MSKCC	GRCh37	X	70351965	70351965	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1163428030		P-0069294-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			299	28	206	0	ENST00000374080.3:c.4162G>A	p.Glu1388Lys	p.E1388K	ENST00000374080		1388	Gag/Aag																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739822	41739822	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069294-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			601	40	352	0	ENST00000242208.4:c.151C>T	p.Gln51Ter	p.Q51*	ENST00000242208	NM_002192.2	51	Cag/Tag																																																																															
FLT3	2322	MSKCC	GRCh37	13	28609712	28609712	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069294-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			634	49	349	0	ENST00000241453.7:c.1517C>G	p.Ala506Gly	p.A506G	ENST00000241453	NM_004119.2	506	gCc/gGc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665129	138665129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069294-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			422	33	340	1	ENST00000330315.3:c.436C>T	p.Arg146Cys	p.R146C	ENST00000330315	NM_023067.3	146	Cgc/Tgc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437813	52437813	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069294-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			642	39	411	0	ENST00000460680.1:c.1348G>T	p.Glu450Ter	p.E450*	ENST00000460680	NM_004656.3	450	Gag/Tag																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437226	52437226	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069294-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			695	38	423	0	ENST00000460680.1:c.1818del	p.Thr607ArgfsTer10	p.T607Rfs*10	ENST00000460680	NM_004656.3	606	gcC/gc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256685	16256685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069294-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			651	48	430	0	ENST00000375759.3:c.3950G>A	p.Arg1317Lys	p.R1317K	ENST00000375759	NM_015001.2	1317	aGa/aAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			711	61	353	0	ENST00000269305.4:c.404G>C	p.Cys135Ser	p.C135S	ENST00000269305	NM_001126112.2	135	tGc/tCc																																																																															
GNA11	2767	MSKCC	GRCh37	19	3119207	3119207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			614	39	400	0	ENST00000078429.4:c.739C>T	p.Arg247Trp	p.R247W	ENST00000078429	NM_002067.2	247	Cgg/Tgg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87549150	87549150	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			501	63	302	0	ENST00000277120.3:c.1707C>G	p.Phe569Leu	p.F569L	ENST00000277120		569	ttC/ttG																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355068	15355068	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			630	53	361	0	ENST00000263377.2:c.2555A>G	p.Asn852Ser	p.N852S	ENST00000263377	NM_058243.2	852	aAc/aGc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411390	63411390	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771210621		P-0072603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			777	79	460	0	ENST00000330258.3:c.1777G>A	p.Ala593Thr	p.A593T	ENST00000330258	NM_152424.3	593	Gcc/Acc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673246	30673246	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072603-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			773	53	400	0	ENST00000376406.3:c.3714G>T	p.Lys1238Asn	p.K1238N	ENST00000376406	NM_014641.2	1238	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514495		P-0073294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	34	522	0	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108121751	108121751	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	64	324	0	ENST00000278616.4:c.1559A>G	p.Asp520Gly	p.D520G	ENST00000278616	NM_000051.3	520	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577526	7577526	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	35	348	0	ENST00000269305.4:c.755T>A	p.Leu252His	p.L252H	ENST00000269305	NM_001126112.2	252	cTc/cAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0073295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	97	417	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0073295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	117	314	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578226	7578226	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1464727668		P-0073295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	198	501	0	ENST00000269305.4:c.623A>T	p.Asp208Val	p.D208V	ENST00000269305	NM_001126112.2	208	gAc/gTc																																																																															
RB1	5925	MSKCC	GRCh37	13	48955481	48955481	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	192	287	2	ENST00000267163.4:c.1597G>T	p.Glu533Ter	p.E533*	ENST00000267163	NM_000321.2	533	Gaa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268974	55268974	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	116	488	0	ENST00000275493.2:c.3040G>T	p.Asp1014Tyr	p.D1014Y	ENST00000275493	NM_005228.3	1014	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0073296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	133	359	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0073296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	130	270	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2985560	2985560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	38	271	0	ENST00000396946.4:c.251G>A	p.Gly84Glu	p.G84E	ENST00000396946	NM_032415.4	84	gGg/gAg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356205	66356205	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	55	332	0	ENST00000273854.3:c.1292T>C	p.Leu431Pro	p.L431P	ENST00000273854	NM_004439.5	431	cTa/cCa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285200	212285200	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	118	250	0	ENST00000342788.4:c.3101T>C	p.Ile1034Thr	p.I1034T	ENST00000342788	NM_005235.2	1034	aTc/aCc																																																																															
MDM4	4194	MSKCC	GRCh37	1	204507437	204507437	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0073296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	32	251	0	ENST00000367182.3:c.511+1G>T		p.X171_splice	ENST00000367182	NM_001278516.1	171																																																																																
PHOX2B	8929	MSKCC	GRCh37	4	41750458	41750458	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	105	232	0	ENST00000226382.2:c.170G>C	p.Cys57Ser	p.C57S	ENST00000226382	NM_003924.3	57	tGc/tCc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71090479	71090479	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0073296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	123	309	0	ENST00000318789.4:c.869G>T	p.Ser290Ile	p.S290I	ENST00000318789	NM_032682.5	290	aGt/aTt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410735	63410735	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	70	337	0	ENST00000330258.3:c.2432T>A	p.Ile811Asn	p.I811N	ENST00000330258	NM_152424.3	811	aTc/aAc																																																																															
GAB1	2549	MSKCC	GRCh37	4	144359582	144359582	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	206	290	0	ENST00000262994.4:c.1024C>G	p.Pro342Ala	p.P342A	ENST00000262994	NM_002039.3	342	Cca/Gca																																																																															
TCEB1	6921	MSKCC	GRCh37	8	74859029	74859029	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0073296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	22	136	0	ENST00000518127.1:c.175G>T	p.Glu59Ter	p.E59*	ENST00000518127	NM_001204857.1	59	Gag/Tag																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149457720	149457720	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	35	256	0	ENST00000286301.3:c.684C>A	p.Ser228Arg	p.S228R	ENST00000286301	NM_005211.3	228	agC/agA																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166318	32166318	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	111	336	0	ENST00000375023.3:c.4636C>A	p.Pro1546Thr	p.P1546T	ENST00000375023	NM_004557.3	1546	Ccc/Acc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87338533	87338533	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	125	246	0	ENST00000277120.3:c.629A>T	p.Glu210Val	p.E210V	ENST00000277120		210	gAa/gTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509830	187509830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	70	320	0	ENST00000441802.2:c.13683G>A	p.Met4561Ile	p.M4561I	ENST00000441802	NM_005245.3	4561	atG/atA																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149498345	149498345	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	56	340	0	ENST00000261799.4:c.2869C>A	p.Leu957Ile	p.L957I	ENST00000261799	NM_002609.3	957	Ctt/Att																																																																															
CTR9	9646	MSKCC	GRCh37	11	10800633	10800633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	77	224	0	ENST00000361367.2:c.3503G>T	p.Gly1168Val	p.G1168V	ENST00000361367	NM_014633.3	1168	gGg/gTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0073298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	85	386	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696461	47696461	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	230	437	0	ENST00000347630.2:c.362G>C	p.Arg121Pro	p.R121P	ENST00000347630	NM_001007230.1	121	cGg/cCg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170015101	170015101	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	112	305	0	ENST00000295797.4:c.1507G>T	p.Glu503Ter	p.E503*	ENST00000295797	NM_002740.5	503	Gaa/Taa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983291	15983291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	218	344	0	ENST00000268712.3:c.3488G>T	p.Gly1163Val	p.G1163V	ENST00000268712	NM_006311.3	1163	gGc/gTc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38955701	38955701	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0073298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	109	314	0	ENST00000357387.3:c.2605C>T	p.Gln869Ter	p.Q869*	ENST00000357387	NM_152756.3	869	Caa/Taa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610109	81610109	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0073298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	189	495	0	ENST00000298171.2:c.1707C>A	p.Cys569Ter	p.C569*	ENST00000298171	NM_000369.2	569	tgC/tgA																																																																															
EED	8726	MSKCC	GRCh37	11	85968566	85968566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	34	259	0	ENST00000263360.6:c.562G>A	p.Gly188Ser	p.G188S	ENST00000263360	NM_003797.3	188	Ggc/Agc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636799	8636799	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	181	360	0	ENST00000356435.5:c.110C>A	p.Ser37Tyr	p.S37Y	ENST00000356435		37	tCt/tAt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012425	29012425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	94	408	0	ENST00000282397.4:c.446C>A	p.Thr149Asn	p.T149N	ENST00000282397	NM_002019.4	149	aCt/aAt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162394420	162394420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	177	369	0	ENST00000366898.1:c.648del	p.Thr217ProfsTer8	p.T217Pfs*8	ENST00000366898	NM_004562.2	216	ccC/cc																																																																															
MITF	4286	MSKCC	GRCh37	3	69987138	69987138	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	204	463	0	ENST00000352241.4:c.520G>T	p.Gly174Trp	p.G174W	ENST00000352241	NM_198159.2	174	Ggg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0073299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	275	365	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	281	519	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																															
MED12	9968	MSKCC	GRCh37	X	70360612	70360612	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0073299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	210	579	0	ENST00000374080.3:c.6172C>T	p.Gln2058Ter	p.Q2058*	ENST00000374080		2058	Cag/Tag																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2489856	2489856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	51	472	0	ENST00000355716.4:c.253G>A	p.Ala85Thr	p.A85T	ENST00000355716	NM_003820.2	85	Gcc/Acc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21350257	21350257	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	80	439	0	ENST00000215739.8:c.2075T>C	p.Phe692Ser	p.F692S	ENST00000215739	NM_006767.3	692	tTt/tCt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859265	151859281	+	frameshift_variant	Frame_Shift_Del	DEL	ACAAATACTGCCCTCAG	ACAAATACTGCCCTCAG	-			P-0073299-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	52	385	0	ENST00000262189.6:c.11381_11397del	p.Pro3794LeufsTer4	p.P3794Lfs*4	ENST00000262189	NM_170606.2	3794	cCTGAGGGCAGTATTTGT/c																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0073306-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	107	343	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ALK	238	MSKCC	GRCh37	2	29445413	29445413	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027375-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			391	46	297	0	ENST00000389048.3:c.3420C>A	p.Asn1140Lys	p.N1140K	ENST00000389048	NM_004304.4	1140	aaC/aaA																																																																															
CBL	867	MSKCC	GRCh37	11	119167743	119167743	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0072348-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	92	188	0	ENST00000264033.4:c.2152C>T	p.Arg718Ter	p.R718*	ENST00000264033	NM_005188.3	718	Cga/Tga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	475255	475255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072348-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	45	240	0	ENST00000399788.2:c.382G>A	p.Gly128Arg	p.G128R	ENST00000399788	NM_001042603.1	128	Gga/Aga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272170	15272170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072348-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	91	267	0	ENST00000263388.2:c.6269G>A	p.Gly2090Asp	p.G2090D	ENST00000263388	NM_000435.2	2090	gGc/gAc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628254	90628254	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	249	402	1	ENST00000330062.3:c.1157A>G	p.Asp386Gly	p.D386G	ENST00000330062	NM_002168.2	386	gAt/gGt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52663052	52663052	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0073352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			29	169	151	0	ENST00000394830.3:c.1302-1G>T		p.X434_splice	ENST00000394830	NM_018313.4	434																																																																																
ANKRD11	29123	MSKCC	GRCh37	16	89350793	89350793	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	212	292	0	ENST00000301030.4:c.2157G>C	p.Lys719Asn	p.K719N	ENST00000301030	NM_001256183.1	719	aaG/aaC																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439591	52439944	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCCTGTGGTAACAGCGGCCCTTTACAGGTGCCTTTCTTTAGGGAAGGACTGCTCTCCCTCTACCTTCTGACGGGGGAAGAACACTGCCCAAGGACATCCCCAGAAAAAGACTTTCCCTGTTTAGGCCTCCCATGTCAGACATTAGCGGGTGGCTCTGAGGTCCACAAGAGGTCCCAAACCCCCCAGTACCTGTGTGGTTGCCCTCAGAGGCTGCAGGGGCCCTGTTTGCTTCCAGCACCAGCGGGGACTTGTTGCTGGCTGACTTGGACTCCTCAGGCAGCTGTGACTCTTGAGACTTGTGGGTCTGAATCAGCTCTGGCTGTGTTACTCTTATCAGCTAACAACAGAATCCA	GGCCTGTGGTAACAGCGGCCCTTTACAGGTGCCTTTCTTTAGGGAAGGACTGCTCTCCCTCTACCTTCTGACGGGGGAAGAACACTGCCCAAGGACATCCCCAGAAAAAGACTTTCCCTGTTTAGGCCTCCCATGTCAGACATTAGCGGGTGGCTCTGAGGTCCACAAGAGGTCCCAAACCCCCCAGTACCTGTGTGGTTGCCCTCAGAGGCTGCAGGGGCCCTGTTTGCTTCCAGCACCAGCGGGGACTTGTTGCTGGCTGACTTGGACTCCTCAGGCAGCTGTGACTCTTGAGACTTGTGGGTCTGAATCAGCTCTGGCTGTGTTACTCTTATCAGCTAACAACAGAATCCA	-			P-0073352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			18	64	55	0	ENST00000460680.1:c.784-16_931+190del		p.X262_splice	ENST00000460680	NM_004656.3	262																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10610368	10610368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	243	380	0	ENST00000171111.5:c.342del	p.Leu115CysfsTer42	p.L115Cfs*42	ENST00000171111	NM_203500.1	114	ggG/gg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151927406	151927406	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0073352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			22	14	20	0	ENST00000262189.6:c.2770G>T	p.Val924Leu	p.V924L	ENST00000262189	NM_170606.2	924	Gtg/Ttg																																																																															
MYC	4609	MSKCC	GRCh37	8	128752836	128752836	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	215	346	0	ENST00000377970.2:c.997G>T	p.Asp333Tyr	p.D333Y	ENST00000377970	NM_002467.4	333	Gac/Tac																																																																															
STK11	6794	MSKCC	GRCh37	19	1221305	1221305	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	230	370	0	ENST00000326873.7:c.828del	p.Asp277ThrfsTer10	p.D277Tfs*10	ENST00000326873	NM_000455.4	276	ggC/gg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993794	72993794	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	214	374	0	ENST00000268489.5:c.251G>T	p.Cys84Phe	p.C84F	ENST00000268489	NM_006885.3	84	tGt/tTt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73336197	73336197	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	174	250	0	ENST00000377767.4:c.2206C>G	p.Leu736Val	p.L736V	ENST00000377767	NM_014953.3	736	Cta/Gta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	125	303	0	ENST00000269305.4:c.398T>A	p.Met133Lys	p.M133K	ENST00000269305	NM_001126112.2	133	aTg/aAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845220	151845220	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	76	314	0	ENST00000262189.6:c.13792T>A	p.Tyr4598Asn	p.Y4598N	ENST00000262189	NM_170606.2	4598	Tac/Aac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857766	9857766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			706	45	616	0	ENST00000330684.3:c.3635C>T	p.Thr1212Met	p.T1212M	ENST00000330684	NM_001134407.1	1212	aCg/aTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591901	48591901	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0072260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	13	555	0	ENST00000342988.3:c.1064A>T	p.Asp355Val	p.D355V	ENST00000342988	NM_005359.5	355	gAc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577586	7577586	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587781589		P-0072260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	105	468	0	ENST00000269305.4:c.695T>C	p.Ile232Thr	p.I232T	ENST00000269305	NM_001126112.2	232	aTc/aCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0072260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	37	330	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ABL1	25	MSKCC	GRCh37	9	133729576	133729576	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	42	383	0	ENST00000318560.5:c.205C>G	p.Leu69Val	p.L69V	ENST00000318560	NM_005157.4	69	Ctg/Gtg																																																																															
ALK	238	MSKCC	GRCh37	2	29754831	29754831	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072490-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	51	552	0	ENST00000389048.3:c.1104C>A	p.His368Gln	p.H368Q	ENST00000389048	NM_004304.4	368	caC/caA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0072490-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	32	360	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212286740	212286740	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072490-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	31	349	0	ENST00000342788.4:c.2956G>T	p.Val986Phe	p.V986F	ENST00000342788	NM_005235.2	986	Gtt/Ttt																																																																															
ETV6	2120	MSKCC	GRCh37	12	11992116	11992117	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0072490-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	56	495	0	ENST00000396373.4:c.207_208dup	p.Leu70ArgfsTer11	p.L70Rfs*11	ENST00000396373	NM_001987.4	69	tgg/tgGCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0072675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			639	248	579	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423522	47423522	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			616	162	385	0	ENST00000404338.3:c.1590T>G	p.Phe530Leu	p.F530L	ENST00000404338	NM_004491.4	530	ttT/ttG																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247474	71247474	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1348187295		P-0072675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			694	206	421	0	ENST00000318789.4:c.59C>T	p.Ser20Leu	p.S20L	ENST00000318789	NM_032682.5	20	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs985033810		P-0072840-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			443	86	402	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438211	49438211	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072840-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			561	75	391	0	ENST00000301067.7:c.5058del	p.Lys1686AsnfsTer36	p.K1686Nfs*36	ENST00000301067	NM_003482.3	1686	aaA/aa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43707977	43707977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072840-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			561	51	404	1	ENST00000382044.4:c.4904G>A	p.Arg1635His	p.R1635H	ENST00000382044	NM_001141980.1	1635	cGc/cAc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36938263	36938263	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138558210		P-0072840-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			568	64	512	0	ENST00000361632.4:c.698G>A	p.Arg233Gln	p.R233Q	ENST00000361632		233	cGg/cAg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484596	57484596	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913494		P-0072840-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			724	95	505	0	ENST00000371085.3:c.680A>G	p.Gln227Arg	p.Q227R	ENST00000371085	NM_000516.4	227	cAg/cGg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682461	37682461	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs186741659		P-0072906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	63	398	0	ENST00000447079.4:c.3652A>G	p.Met1218Val	p.M1218V	ENST00000447079	NM_015083.1	1218	Atg/Gtg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43708566	43708566	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	58	468	0	ENST00000382044.4:c.4730T>C	p.Ile1577Thr	p.I1577T	ENST00000382044	NM_001141980.1	1577	aTt/aCt																																																																															
TEK	7010	MSKCC	GRCh37	9	27185549	27185549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	71	400	0	ENST00000380036.4:c.1249C>T	p.Pro417Ser	p.P417S	ENST00000380036	NM_000459.3	417	Cct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0073183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	151	575	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T	rs730881673		P-0073183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	177	619	0	ENST00000304494.5:c.131dup	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575109	48575109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	125	456	0	ENST00000342988.3:c.303G>T	p.Trp101Cys	p.W101C	ENST00000342988	NM_005359.5	101	tgG/tgT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0073183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	137	337	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0073187-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	29	493	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0073187-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	20	274	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120713	115120872	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTCTTCGGGCTCCATGGTCTTCAAAGGCCTCAGATGCGCCTGGGGCCCCAGGGAGGAGAACGGGATGCCGGTCTCGGCCGCCCCCACCAATTGATCCATGATCGGCTTGGCCAGGGCGCCCGGCAGCGAGAGCGCCGCCGCGCCGTTGGGAGGCAGCG	TCTTCTTCGGGCTCCATGGTCTTCAAAGGCCTCAGATGCGCCTGGGGCCCCAGGGAGGAGAACGGGATGCCGGTCTCGGCCGCCCCCACCAATTGATCCATGATCGGCTTGGCCAGGGCGCCCGGCAGCGAGAGCGCCGCCGCGCCGTTGGGAGGCAGCG	-			P-0073226-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	98	441	0	ENST00000257566.3:c.134_293del	p.Thr45ArgfsTer41	p.T45Rfs*41	ENST00000257566	NM_016569.3	45	aCGCTGCCTCCCAACGGCGCGGCGGCGCTCTCGCTGCCGGGCGCCCTGGCCAAGCCGATCATGGATCAATTGGTGGGGGCGGCCGAGACCGGCATCCCGTTCTCCTCCCTGGGGCCCCAGGCGCATCTGAGGCCTTTGAAGACCATGGAGCCCGAAGAAGAg/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0073226-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	278	459	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
INSR	3643	MSKCC	GRCh37	19	7267466	7267466	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073226-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	203	299	0	ENST00000302850.5:c.542del	p.Glu181GlyfsTer101	p.E181Gfs*101	ENST00000302850	NM_000208.2	181	gAg/gg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138384045	138384046	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0073226-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	63	214	0	ENST00000289153.2:c.2505-1_2505delinsAA		p.X835_splice	ENST00000289153	NM_006219.2	835																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0073226-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	323	328	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072912-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	387	457	0	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913237		P-0072912-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	255	270	0	ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0072912-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	299	318	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017724	31017724	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1005458245		P-0072912-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	94	262	0	ENST00000375687.4:c.586G>A	p.Asp196Asn	p.D196N	ENST00000375687	NM_015338.5	196	Gat/Aat																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7983988	7983988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072912-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	29	369	0	ENST00000319144.4:c.638G>A	p.Arg213His	p.R213H	ENST00000319144	NM_001139.2	213	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0073169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	76	723	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112370	115112370	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371891930		P-0073169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	34	678	0	ENST00000257566.3:c.1370C>T	p.Pro457Leu	p.P457L	ENST00000257566	NM_016569.3	457	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0073169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	47	178	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902191	50902191	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	73	550	0	ENST00000440232.2:c.83C>A	p.Ala28Glu	p.A28E	ENST00000440232	NM_002691.3	28	gCa/gAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913836	32913837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0073171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			74	21	317	1	ENST00000380152.3:c.5351dup	p.Asn1784LysfsTer3	p.N1784Kfs*3	ENST00000380152		1782	caa/cAaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692879	89692879	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			61	11	189	0	ENST00000371953.3:c.364del	p.Ile122PhefsTer12	p.I122Ffs*12	ENST00000371953	NM_000314.4	121	gcA/gc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028672	12028672	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	50	421	0	ENST00000353533.5:c.875G>T	p.Ser292Ile	p.S292I	ENST00000353533	NM_003010.3	292	aGt/aTt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939462	71939462	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	103	818	0	ENST00000298229.2:c.317A>T	p.Asn106Ile	p.N106I	ENST00000298229	NM_001567.3	106	aAc/aTc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589014	67589376	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTCTTACACTAAGGTAAGCCAGGGAATATAGCTGAAATTAGGGTTTTGGGCTGATATTAAAACATATTTCCTTATTCCAAAATGTTAATACCTTTATTTTTATATTGTTTTTACAGGAAAGGGGGAAATAACAAATTAATCAAAATATTTCATCGAGATGGGAAATATGGCTTCTCTGACCCATTAACCTTCAGTTCTGTGGTTGAATTAATAAACCACTACCGGAATGAATCTCTAGCTCAGTATAATCCCAAATTGGATGTGAAATTACTTTATCCAGTATCCAAATACCAACAGGTAATAAAAACTGAATGAATTATCCAGTTACGATGTTTAGACAAGATCCTTTTAATACTTAGAAA	ACTCTTACACTAAGGTAAGCCAGGGAATATAGCTGAAATTAGGGTTTTGGGCTGATATTAAAACATATTTCCTTATTCCAAAATGTTAATACCTTTATTTTTATATTGTTTTTACAGGAAAGGGGGAAATAACAAATTAATCAAAATATTTCATCGAGATGGGAAATATGGCTTCTCTGACCCATTAACCTTCAGTTCTGTGGTTGAATTAATAAACCACTACCGGAATGAATCTCTAGCTCAGTATAATCCCAAATTGGATGTGAAATTACTTTATCCAGTATCCAAATACCAACAGGTAATAAAAACTGAATGAATTATCCAGTTACGATGTTTAGACAAGATCCTTTTAATACTTAGAAA	-			P-0073171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	18	444	0	ENST00000274335.5:c.1107_1299+67del		p.X369_splice	ENST00000274335		369																																																																																
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0073172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	80	395	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117352	115117396	+	inframe_deletion	In_Frame_Del	DEL	GGGGAACAAGTATGTCCGAAATGTACTATAAGGGAGTTTCAAGAT	GGGGAACAAGTATGTCCGAAATGTACTATAAGGGAGTTTCAAGAT	-			P-0073172-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	118	536	0	ENST00000257566.3:c.778_822del	p.Ile260_Pro274del	p.I260_P274del	ENST00000257566	NM_016569.3	260	ATCTTGAAACTCCCTTATAGTACATTTCGGACATACTTGTTCCCC/-																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061310	38061310	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs745876197		P-0073174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	398	669	0	ENST00000250448.2:c.679T>C	p.Cys227Arg	p.C227R	ENST00000250448	NM_004496.3	227	Tgc/Cgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952142	178952142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1253171657		P-0073174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			81	303	420	0	ENST00000263967.3:c.3197C>T	p.Ala1066Val	p.A1066V	ENST00000263967	NM_006218.2	1066	gCa/gTa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906916	32906919	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-	rs80359277		P-0073174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			73	141	472	0	ENST00000380152.3:c.1310_1313del	p.Lys437IlefsTer22	p.K437Ifs*22	ENST00000380152		434	aAAAGa/aa																																																																															
RB1	5925	MSKCC	GRCh37	13	48878148	48878148	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	336	677	0	ENST00000267163.4:c.100G>T	p.Glu34Ter	p.E34*	ENST00000267163	NM_000321.2	34	Gag/Tag																																																																															
RHOA	387	MSKCC	GRCh37	3	49397785	49397785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	387	620	0	ENST00000418115.1:c.439A>G	p.Met147Val	p.M147V	ENST00000418115	NM_001664.2	147	Atg/Gtg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873392	151873407	+	frameshift_variant	Frame_Shift_Del	DEL	TCTAGAAGAAGGGGCC	TCTAGAAGAAGGGGCC	-			P-0073174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	258	668	0	ENST00000262189.6:c.9131_9146del	p.Arg3044LysfsTer27	p.R3044Kfs*27	ENST00000262189	NM_170606.2	3044	aGGCCCCTTCTTCTAGAa/aa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189840	66189840	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	149	386	0	ENST00000273854.3:c.3106C>A	p.Pro1036Thr	p.P1036T	ENST00000273854	NM_004439.5	1036	Cca/Aca																																																																															
FLT3	2322	MSKCC	GRCh37	13	28597586	28597586	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	162	431	0	ENST00000241453.7:c.2319G>C	p.Arg773Ser	p.R773S	ENST00000241453	NM_004119.2	773	agG/agC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0073176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	107	87	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998985	11998985	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0073176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	120	189	0	ENST00000353533.5:c.487C>T	p.Gln163Ter	p.Q163*	ENST00000353533	NM_003010.3	163	Cag/Tag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1292426539		P-0073176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	191	711	0	ENST00000250448.2:c.781C>G	p.Arg261Gly	p.R261G	ENST00000250448	NM_004496.3	261	Cgc/Ggc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15935683	15935683	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0073176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	161	656	0	ENST00000268712.3:c.7250del	p.Asn2417ThrfsTer74	p.N2417Tfs*74	ENST00000268712	NM_006311.3	2417	aAc/ac																																																																															
NBN	4683	MSKCC	GRCh37	8	90976722	90976722	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	29	286	0	ENST00000265433.3:c.910C>A	p.Pro304Thr	p.P304T	ENST00000265433	NM_002485.4	304	Cct/Act																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10287983	10287983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	257	472	0	ENST00000340748.4:c.506C>T	p.Ser169Phe	p.S169F	ENST00000340748		169	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1131691025		P-0070450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	142	427	1	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206666366	206666366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	156	435	0	ENST00000367120.3:c.1846G>A	p.Glu616Lys	p.E616K	ENST00000367120	NM_014002.3	616	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0070450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	95	268	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89156953	89156953	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	111	384	0	ENST00000336596.2:c.55T>G	p.Phe19Val	p.F19V	ENST00000336596	NM_005233.5	19	Ttc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0072294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	120	392	0	ENST00000269305.4:c.398T>A	p.Met133Lys	p.M133K	ENST00000269305	NM_001126112.2	133	aTg/aAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0072294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	89	212	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
CUL3	8452	MSKCC	GRCh37	2	225342959	225342959	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	29	261	0	ENST00000264414.4:c.2133G>T	p.Met711Ile	p.M711I	ENST00000264414	NM_003590.4	711	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0072534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	272	377	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
AR	367	MSKCC	GRCh37	X	66941796	66941796	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	89	298	0	ENST00000374690.3:c.2440T>G	p.Phe814Val	p.F814V	ENST00000374690	NM_000044.3	814	Ttc/Gtc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117862958	117862958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	79	221	0	ENST00000297338.2:c.1519G>A	p.Glu507Lys	p.E507K	ENST00000297338	NM_006265.2	507	Gaa/Aaa																																																																															
NF2	4771	MSKCC	GRCh37	22	30070871	30070871	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs74315503		P-0072534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	113	337	0	ENST00000338641.4:c.1387G>A	p.Glu463Lys	p.E463K	ENST00000338641	NM_000268.3	463	Gag/Aag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440635	56440635	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0072534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	247	445	0	ENST00000407977.2:c.582+1G>A		p.X194_splice	ENST00000407977		194																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0072534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	182	216	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041796	14041796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	131	388	0	ENST00000311895.7:c.2343C>A	p.Ser781Arg	p.S781R	ENST00000311895	NM_005236.2	781	agC/agA																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0072616-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			232	35	549	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767326		P-0072768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	12	234	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs587781642		P-0072768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	40	427	0	ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53225944	53225944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	43	477	0	ENST00000375401.3:c.2905G>T	p.Ala969Ser	p.A969S	ENST00000375401	NM_004187.3	969	Gcc/Tcc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0072844-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	598	395	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0072844-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			112	382	426	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499449	89499449	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072844-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			318	88	335	0	ENST00000336596.2:c.2619G>C	p.Gln873His	p.Q873H	ENST00000336596	NM_005233.5	873	caG/caC																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4110632	4110632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072844-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			282	111	491	0	ENST00000262948.5:c.325C>T	p.Pro109Ser	p.P109S	ENST00000262948	NM_030662.3	109	Ccg/Tcg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351475	89351475	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072844-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			479	101	486	0	ENST00000301030.4:c.1475A>T	p.Asp492Val	p.D492V	ENST00000301030	NM_001256183.1	492	gAc/gTc																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50492754	50492754	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	26	421	0	ENST00000394963.4:c.1519G>C	p.Glu507Gln	p.E507Q	ENST00000394963	NM_003076.4	507	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579579	7579579	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	32	483	0	ENST00000269305.4:c.108del	p.Ser37ProfsTer7	p.S37Pfs*7	ENST00000269305	NM_001126112.2	36	ccG/cc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448579	89448579	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	33	469	0	ENST00000336596.2:c.1543G>C	p.Ala515Pro	p.A515P	ENST00000336596	NM_005233.5	515	Gct/Cct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0073118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	22	267	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882075	36882075	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	31	438	0	ENST00000358127.4:c.938C>A	p.Pro313His	p.P313H	ENST00000358127	NM_001280556.1	313	cCc/cAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880920	134880920	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	28	413	0	ENST00000398015.3:c.1485del	p.Leu496CysfsTer31	p.L496Cfs*31	ENST00000398015	NM_004441.4	495	Ggg/gg																																																																															
IRF4	3662	MSKCC	GRCh37	6	394938	394938	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	80	417	0	ENST00000380956.4:c.334G>T	p.Glu112Ter	p.E112*	ENST00000380956	NM_001195286.1	112	Gag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115968	8115968	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	35	479	0	ENST00000346208.3:c.1314G>C	p.Met438Ile	p.M438I	ENST00000346208		438	atG/atC																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141053	55141053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	34	429	0	ENST00000257290.5:c.1699C>A	p.Pro567Thr	p.P567T	ENST00000257290	NM_006206.4	567	Cca/Aca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0073119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	87	327	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31495463	31495463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073119-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	52	380	0	ENST00000344624.3:c.1685G>A	p.Arg562His	p.R562H	ENST00000344624		562	cGt/cAt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481620	56481620	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	88	491	0	ENST00000267101.3:c.655T>C	p.Phe219Leu	p.F219L	ENST00000267101	NM_001982.3	219	Ttt/Ctt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057733	27057733	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0073197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	90	496	0	ENST00000324856.7:c.1441C>T	p.Gln481Ter	p.Q481*	ENST00000324856	NM_006015.4	481	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0073197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	45	268	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39214732	39214732	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs141676532		P-0073197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	50	193	0	ENST00000402219.2:c.3392G>A	p.Arg1131Lys	p.R1131K	ENST00000402219	NM_005633.3	1131	aGa/aAa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038889	12038889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	86	342	0	ENST00000396373.4:c.1182G>A	p.Met394Ile	p.M394I	ENST00000396373	NM_001987.4	394	atG/atA																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732911	30732944	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GGGCATCCAGATGGTGTGTGAGACGTTGACTGAG	GGGCATCCAGATGGTGTGTGAGACGTTGACTGAG	-			P-0073197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	61	366	0	ENST00000359013.4:c.1600-1_1632del		p.X534_splice	ENST00000359013	NM_001024847.2	534																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0073200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	64	305	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29556320	29556321	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCGGCTGTTG			P-0073200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	60	358	0	ENST00000358273.4:c.2690_2699dup	p.Leu901AlafsTer8	p.L901Afs*8	ENST00000358273	NM_001042492.2	896	gat/gaTCGGCTGTTGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29556334	29556334	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	67	378	0	ENST00000358273.4:c.2701T>G	p.Leu901Val	p.L901V	ENST00000358273	NM_001042492.2	901	Tta/Gta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0073278-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			48	288	447	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87636213	87636213	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs988042143		P-0073278-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	148	403	0	ENST00000277120.3:c.2378C>T	p.Thr793Met	p.T793M	ENST00000277120		793	aCg/aTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8517922	8517922	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073278-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	60	313	0	ENST00000356435.5:c.1469T>A	p.Val490Asp	p.V490D	ENST00000356435		490	gTc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0073279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	214	595	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0073279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	72	141	40	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
ATM	472	MSKCC	GRCh37	11	108121715	108121715	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0073279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	20	431	0	ENST00000278616.4:c.1523T>G	p.Leu508Arg	p.L508R	ENST00000278616	NM_000051.3	508	cTt/cGt																																																																															
BLM	641	MSKCC	GRCh37	15	91295055	91295074	+	frameshift_variant	Frame_Shift_Del	DEL	TTACATTCAACTGAGAAAGT	TTACATTCAACTGAGAAAGT	-			P-0073279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	59	311	0	ENST00000355112.3:c.839_858del	p.Leu280SerfsTer4	p.L280Sfs*4	ENST00000355112	NM_000057.2	280	TTACATTCAACTGAGAAAGTt/t																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115974	8115975	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0073279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	164	459	0	ENST00000346208.3:c.1321dup	p.Ala441GlyfsTer66	p.A441Gfs*66	ENST00000346208		440	-/G																																																																															
ALK	238	MSKCC	GRCh37	2	29917739	29917739	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	30	425	0	ENST00000389048.3:c.929A>G	p.Glu310Gly	p.E310G	ENST00000389048	NM_004304.4	310	gAg/gGg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128432143	128432143	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	20	241	0	ENST00000265960.3:c.303C>G	p.Ile101Met	p.I101M	ENST00000265960	NM_001006617.1	101	atC/atG																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138198348	138198348	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	35	426	0	ENST00000237289.4:c.941T>C	p.Val314Ala	p.V314A	ENST00000237289	NM_001270507.1	314	gTc/gCc																																																																															
ATR	545	MSKCC	GRCh37	3	142224076	142224076	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	142	378	0	ENST00000350721.4:c.5101T>C	p.Ser1701Pro	p.S1701P	ENST00000350721	NM_001184.3	1701	Tct/Cct																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838002	156838002	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073312-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	40	498	0	ENST00000524377.1:c.535G>T	p.Gly179Trp	p.G179W	ENST00000524377	NM_002529.3	179	Ggg/Tgg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098975	178098975	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1328994103		P-0073312-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	37	348	0	ENST00000397062.3:c.70T>C	p.Trp24Arg	p.W24R	ENST00000397062	NM_006164.4	24	Tgg/Cgg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044473	47044473	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073312-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	26	200	0	ENST00000329236.7:c.1736G>C	p.Arg579Pro	p.R579P	ENST00000329236	NM_001204466.1	579	cGc/cCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0073316-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	42	307	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0073316-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	20	237	0				ENST00000310581	NM_198253.2																																																																																	
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0073316-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	48	259	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0073316-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	43	334	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248148	110248148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073316-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	29	232	0	ENST00000374672.4:c.1324G>A	p.Glu442Lys	p.E442K	ENST00000374672	NM_004235.4	442	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0073316-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	91	163	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564302	86564302	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073316-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	31	270	0	ENST00000274376.6:c.34G>C	p.Gly12Arg	p.G12R	ENST00000274376	NM_002890.2	12	Ggc/Cgc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129972	55129972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073316-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	50	313	0	ENST00000257290.5:c.506C>A	p.Pro169His	p.P169H	ENST00000257290	NM_006206.4	169	cCt/cAt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636812	8636812	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073316-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	21	278	0	ENST00000356435.5:c.97C>A	p.Gln33Lys	p.Q33K	ENST00000356435		33	Cag/Aag																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728482	190728482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073316-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	33	251	0	ENST00000441310.2:c.1870G>C	p.Ala624Pro	p.A624P	ENST00000441310	NM_000534.4	624	Gct/Cct																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056352	26056352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073316-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	41	249	0	ENST00000343677.2:c.305C>T	p.Ser102Phe	p.S102F	ENST00000343677	NM_005319.3	102	tCt/tTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974802	21974802	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	GGA			P-0073316-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	40	268	0	ENST00000304494.5:c.25delinsTCC	p.Met9SerfsTer18	p.M9Sfs*18	ENST00000304494	NM_000077.4	9	Atg/TCCtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0073317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	152	407	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99156051	99156051	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776096061		P-0073317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	47	397	1	ENST00000074304.5:c.731G>A	p.Arg244Gln	p.R244Q	ENST00000074304	NM_001134224.1	244	cGg/cAg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635191	87635191	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367769334		P-0073317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	31	395	0	ENST00000277120.3:c.2243C>T	p.Thr748Met	p.T748M	ENST00000277120		748	aCg/aTg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564672	139564672	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	97	443	0	ENST00000308874.7:c.461A>T	p.Asn154Ile	p.N154I	ENST00000308874		154	aAc/aTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220439	1220439	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009212-T11-IM7									Unknown	SOMATIC				MSK-IMPACT			376	192	612	0	ENST00000326873.7:c.532A>T	p.Lys178Ter	p.K178*	ENST00000326873	NM_000455.4	178	Aag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259034	89259034	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009212-T11-IM7									Unknown	SOMATIC				MSK-IMPACT			342	37	407	0	ENST00000336596.2:c.178G>A	p.Glu60Lys	p.E60K	ENST00000336596	NM_005233.5	60	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0009212-T11-IM7									Unknown	SOMATIC				MSK-IMPACT			177	99	275	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2047314	2047321	+	frameshift_variant	Frame_Shift_Del	DEL	CGCAGCCG	CGCAGCCG	-			P-0009212-T11-IM7									Unknown	SOMATIC				MSK-IMPACT			117	12	159	0	ENST00000349721.2:c.885_892del	p.Gln296ArgfsTer59	p.Q296Rfs*59	ENST00000349721	NM_003070.3	292	ccCGCAGCCGcg/cccg																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839984	27839984	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009212-T11-IM7									Unknown	SOMATIC				MSK-IMPACT			617	68	690	0	ENST00000328488.2:c.110A>T	p.Lys37Met	p.K37M	ENST00000328488	NM_003533.2	37	aAg/aTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599976	10599987	+	inframe_deletion	In_Frame_Del	DEL	CGCTGTTCAGCT	CGCTGTTCAGCT	-			P-0009212-T11-IM7									Unknown	SOMATIC				MSK-IMPACT			331	176	523	0	ENST00000171111.5:c.1589_1600del	p.Gln530_Val534delinsLeu	p.Q530_V534delinsL	ENST00000171111	NM_203500.1	530	cAGCTGAACAGCGtg/ctg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138580	11138580	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009212-T11-IM7									Unknown	SOMATIC				MSK-IMPACT			295	138	477	0	ENST00000344626.4:c.3337del	p.Glu1113LysfsTer27	p.E1113Kfs*27	ENST00000344626	NM_003072.3	1112	atG/at																																																																															
MED12	9968	MSKCC	GRCh37	X	70352755	70352755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009212-T11-IM7									Unknown	SOMATIC				MSK-IMPACT			127	65	212	0	ENST00000374080.3:c.4476G>T	p.Gln1492His	p.Q1492H	ENST00000374080		1492	caG/caT																																																																															
DICER1	23405	MSKCC	GRCh37	14	95599744	95599744	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009212-T11-IM7									Unknown	SOMATIC				MSK-IMPACT			385	163	433	0	ENST00000343455.3:c.52A>T	p.Thr18Ser	p.T18S	ENST00000343455	NM_177438.2	18	Acc/Tcc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500543	99500543	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777341351		P-0009212-T11-IM7									Unknown	SOMATIC				MSK-IMPACT			600	65	640	0	ENST00000268035.6:c.3976G>A	p.Glu1326Lys	p.E1326K	ENST00000268035	NM_000875.3	1326	Gag/Aag																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36989322	36989322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			301	42	297	0	ENST00000354822.5:c.13G>A	p.Gly5Ser	p.G5S	ENST00000354822	NM_001079668.2	5	Ggc/Agc																																																																															
CTR9	9646	MSKCC	GRCh37	11	10785358	10785358	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs869312709		P-0071737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			243	25	308	0	ENST00000361367.2:c.1126G>A	p.Glu376Lys	p.E376K	ENST00000361367	NM_014633.3	376	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578424	7578425	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTGC			P-0071737-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			325	132	405	0	ENST00000269305.4:c.501_505dup	p.Met169SerfsTer3	p.M169Sfs*3	ENST00000269305	NM_001126112.2	169	atg/aGCACAtg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098950	178098950	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0072899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	88	356	0	ENST00000397062.3:c.95T>G	p.Val32Gly	p.V32G	ENST00000397062	NM_006164.4	32	gTa/gGa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970917	21970917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	263	362	0	ENST00000304494.5:c.441del	p.Ala148ArgfsTer45	p.A148Rfs*45	ENST00000304494	NM_000077.4	147	gcC/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578513	7578513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	157	383	0	ENST00000269305.4:c.417G>T	p.Lys139Asn	p.K139N	ENST00000269305	NM_001126112.2	139	aaG/aaT																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2207577	2207577	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	58	308	0	ENST00000398665.3:c.861C>G	p.Ile287Met	p.I287M	ENST00000398665	NM_032482.2	287	atC/atG																																																																															
PARP1	142	MSKCC	GRCh37	1	226568822	226568822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	119	413	0	ENST00000366794.5:c.1247G>A	p.Gly416Glu	p.G416E	ENST00000366794	NM_001618.3	416	gGg/gAg																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61323054	61323054	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	172	485	0	ENST00000283752.5:c.1010C>A	p.Thr337Lys	p.T337K	ENST00000283752	NM_006919.2	337	aCa/aAa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967291	25967291	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	151	427	0	ENST00000435504.4:c.1915A>T	p.Arg639Trp	p.R639W	ENST00000435504		639	Agg/Tgg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538382	9538382	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0072899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	78	307	0	ENST00000353224.5:c.1617-1G>T		p.X539_splice	ENST00000353224	NM_177990.2	539																																																																																
CD79A	973	MSKCC	GRCh37	19	42381441	42381441	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			775	49	500	0	ENST00000221972.3:c.67G>T	p.Ala23Ser	p.A23S	ENST00000221972	NM_021601.3	23	Gct/Tct																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650941	37650941	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	100	360	0	ENST00000447079.4:c.2413G>C	p.Asp805His	p.D805H	ENST00000447079	NM_015083.1	805	Gac/Cac																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0072901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	92	419	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7573999	7573999	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	207	400	0	ENST00000269305.4:c.1028del	p.Glu343GlyfsTer2	p.E343Gfs*2	ENST00000269305	NM_001126112.2	343	gAg/gg																																																																															
APC	324	MSKCC	GRCh37	5	112162804	112162804	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0072901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	55	318	0	ENST00000257430.4:c.1409-1G>A		p.X470_splice	ENST00000257430	NM_000038.5	470																																																																																
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0073114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	129	372	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883981	37883981	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1357550606		P-0073114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	97	544	0	ENST00000269571.5:c.3452C>T	p.Ser1151Leu	p.S1151L	ENST00000269571		1151	tCg/tTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508995	106508995	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	87	419	0	ENST00000359195.3:c.989C>A	p.Thr330Lys	p.T330K	ENST00000359195	NM_002649.2	330	aCg/aAg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602926	10602926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	160	404	0	ENST00000171111.5:c.652G>A	p.Glu218Lys	p.E218K	ENST00000171111	NM_203500.1	218	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971019	21971045	+	inframe_deletion	In_Frame_Del	DEL	CAGACGGCCCCAGGCATCGCGCACGTC	CAGACGGCCCCAGGCATCGCGCACGTC	-			P-0073114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	152	523	0	ENST00000304494.5:c.313_339del	p.Asp105_Leu113del	p.D105_L113del	ENST00000304494	NM_000077.4	105	GACGTGCGCGATGCCTGGGGCCGTCTG/-																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410670	63410670	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	85	219	0	ENST00000330258.3:c.2497G>T	p.Asp833Tyr	p.D833Y	ENST00000330258	NM_152424.3	833	Gat/Tat																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379841	17379841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	64	362	0	ENST00000359435.4:c.226C>T	p.Pro76Ser	p.P76S	ENST00000359435	NM_001033549.1	76	Ccc/Tcc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936170	71936170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	81	436	0	ENST00000298229.2:c.142G>A	p.Asp48Asn	p.D48N	ENST00000298229	NM_001567.3	48	Gac/Aac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247377	153247391	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AACAACTCTGCAGAG	AACAACTCTGCAGAG	-			P-0073114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	96	281	0	ENST00000281708.4:c.1419-8_1425del		p.X473_splice	ENST00000281708	NM_033632.3	473																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81929514	81929514	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	80	429	0	ENST00000359376.3:c.1175A>T	p.His392Leu	p.H392L	ENST00000359376	NM_002661.3	392	cAc/cTc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229533	5229533	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	204	365	0	ENST00000357368.4:c.2318G>C	p.Arg773Pro	p.R773P	ENST00000357368	NM_002850.3	773	cGc/cCc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867567	45867567	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	295	521	0	ENST00000391945.4:c.741G>T	p.Met247Ile	p.M247I	ENST00000391945	NM_000400.3	247	atG/atT																																																																															
MPL	4352	MSKCC	GRCh37	1	43804352	43804352	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	52	512	0	ENST00000372470.3:c.352C>A	p.Gln118Lys	p.Q118K	ENST00000372470	NM_005373.2	118	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	191	650	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
MAP2K4	6416	MSKCC	GRCh37	17	11924228	11924228	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs959911955		P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	28	567	0	ENST00000353533.5:c.25G>A	p.Gly9Ser	p.G9S	ENST00000353533	NM_003010.3	9	Ggc/Agc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	114	608	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602611	10602611	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	141	585	0	ENST00000171111.5:c.967A>G	p.Lys323Glu	p.K323E	ENST00000171111	NM_203500.1	323	Aag/Gag																																																																															
INHA	3623	MSKCC	GRCh37	2	220440178	220440178	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1025309043		P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	129	655	0	ENST00000243786.2:c.1031C>T	p.Ser344Leu	p.S344L	ENST00000243786	NM_002191.3	344	tCg/tTg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780809	9780809	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	37	486	0	ENST00000377346.4:c.1531C>G	p.Leu511Val	p.L511V	ENST00000377346	NM_005026.3	511	Ctg/Gtg																																																																															
CDC42	998	MSKCC	GRCh37	1	22417942	22417942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	26	247	0	ENST00000344548.3:c.508G>A	p.Asp170Asn	p.D170N	ENST00000344548	NM_001039802.1	170	Gac/Aac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105521	27105521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	32	464	0	ENST00000324856.7:c.5132G>T	p.Gly1711Val	p.G1711V	ENST00000324856	NM_006015.4	1711	gGg/gTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458189	120458189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	50	678	0	ENST00000256646.2:c.7156C>T	p.Pro2386Ser	p.P2386S	ENST00000256646	NM_024408.3	2386	Ccc/Tcc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462050	120462050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	48	537	0	ENST00000256646.2:c.5666G>T	p.Arg1889Leu	p.R1889L	ENST00000256646	NM_024408.3	1889	cGg/cTg																																																																															
RET	5979	MSKCC	GRCh37	10	43601979	43601979	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	60	564	0	ENST00000355710.3:c.1023G>T	p.Gln341His	p.Q341H	ENST00000355710	NM_020975.4	341	caG/caT																																																																															
TET1	80312	MSKCC	GRCh37	10	70333488	70333488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	71	509	0	ENST00000373644.4:c.1393G>T	p.Ala465Ser	p.A465S	ENST00000373644	NM_030625.2	465	Gct/Tct																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911612	114911612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	29	463	0	ENST00000543371.1:c.1130G>T	p.Ser377Ile	p.S377I	ENST00000543371	NM_001198531.1	377	aGc/aTc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245537	46245537	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	184	528	0	ENST00000334344.6:c.3631G>T	p.Gly1211Ter	p.G1211*	ENST00000334344	NM_152641.2	1211	Gga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447320	49447320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	46	557	0	ENST00000301067.7:c.778C>A	p.Leu260Met	p.L260M	ENST00000301067	NM_003482.3	260	Ctg/Atg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134331	41134331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	47	608	0	ENST00000379561.5:c.1297C>T	p.Pro433Ser	p.P433S	ENST00000379561	NM_002015.3	433	Cct/Tct																																																																															
DICER1	23405	MSKCC	GRCh37	14	95593026	95593026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	113	400	0	ENST00000343455.3:c.794G>T	p.Gly265Val	p.G265V	ENST00000343455	NM_177438.2	265	gGg/gTg																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675508	40675508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	57	478	0	ENST00000249776.8:c.289G>T	p.Gly97Cys	p.G97C	ENST00000249776	NM_033286.3	97	Ggc/Tgc																																																																															
B2M	567	MSKCC	GRCh37	15	45007840	45007840	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	26	468	0	ENST00000558401.1:c.287A>G	p.Asp96Gly	p.D96G	ENST00000558401	NM_004048.2	96	gAt/gGt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348172	348172	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	93	666	0	ENST00000262320.3:c.1334A>T	p.His445Leu	p.H445L	ENST00000262320	NM_003502.3	445	cAc/cTc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647240	23647261	+	frameshift_variant	Frame_Shift_Del	DEL	AGAATCTGGAAGTTCAGATTTA	AGAATCTGGAAGTTCAGATTTA	-			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	12	462	0	ENST00000261584.4:c.606_627del	p.Lys203GlnfsTer13	p.K203Qfs*13	ENST00000261584	NM_024675.3	202	ctTAAATCTGAACTTCCAGATTCT/ct																																																																															
AURKB	9212	MSKCC	GRCh37	17	8111129	8111129	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	24	501	0	ENST00000585124.1:c.78G>T	p.Gln26His	p.Q26H	ENST00000585124	NM_004217.3	26	caG/caT																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47440642	47440642	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	102	341	0	ENST00000404338.3:c.3803G>T	p.Cys1268Phe	p.C1268F	ENST00000404338	NM_004491.4	1268	tGt/tTt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99180093	99180093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	35	526	0	ENST00000074304.5:c.2036G>T	p.Cys679Phe	p.C679F	ENST00000074304	NM_001134224.1	679	tGc/tTc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794401	242794401	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	130	607	0	ENST00000334409.5:c.541C>A	p.Leu181Met	p.L181M	ENST00000334409	NM_005018.2	181	Ctg/Atg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877329	40877329	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	28	482	0	ENST00000373198.4:c.2367G>T	p.Arg789Ser	p.R789S	ENST00000373198	NM_133170.3	789	agG/agT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41514449	41514449	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	29	392	0	ENST00000373198.4:c.212C>T	p.Thr71Ile	p.T71I	ENST00000373198	NM_133170.3	71	aCa/aTa																																																																															
IRF4	3662	MSKCC	GRCh37	6	393282	393282	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	32	477	0	ENST00000380956.4:c.130A>T	p.Asn44Tyr	p.N44Y	ENST00000380956	NM_001195286.1	44	Aac/Tac																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163356	32163356	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	27	632	0	ENST00000375023.3:c.5870del	p.Gly1957GlufsTer39	p.G1957Efs*39	ENST00000375023	NM_004557.3	1957	gGa/ga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180677	32180677	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	51	452	0	ENST00000375023.3:c.2450A>G	p.Asn817Ser	p.N817S	ENST00000375023	NM_004557.3	817	aAt/aGt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93973633	93973633	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	40	318	0	ENST00000369303.4:c.1743G>T	p.Arg581Ser	p.R581S	ENST00000369303	NM_004440.3	581	agG/agT																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005671	150005671	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	131	504	0	ENST00000253339.5:c.554T>G	p.Leu185Ter	p.L185*	ENST00000253339		185	tTa/tGa																																																																															
HGF	3082	MSKCC	GRCh37	7	81346659	81346659	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	92	447	0	ENST00000222390.5:c.1294G>C	p.Ala432Pro	p.A432P	ENST00000222390	NM_000601.4	432	Gca/Cca																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981762	70981762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	75	623	0	ENST00000276594.2:c.334C>T	p.Pro112Ser	p.P112S	ENST00000276594	NM_024504.3	112	Ccg/Tcg																																																																															
NBN	4683	MSKCC	GRCh37	8	90958381	90958394	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAAATTTTTTAG	TTGAAATTTTTTAG	-			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	10	304	0	ENST00000265433.3:c.2044_2057del	p.Leu682GlufsTer55	p.L682Efs*55	ENST00000265433	NM_002485.4	682	CTAAAAAATTTCAAg/g																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518411	8518411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0073116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	103	387	0	ENST00000356435.5:c.980G>T	p.Gly327Val	p.G327V	ENST00000356435		327	gGa/gTa																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271224	26271224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			776	63	518	0	ENST00000305910.3:c.389G>A	p.Arg130His	p.R130H	ENST00000305910	NM_003534.2	130	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0073158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	282	528	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																															
RB1	5925	MSKCC	GRCh37	13	48937091	48937091	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0073158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			53	68	224	0	ENST00000267163.4:c.859del	p.Glu287ArgfsTer2	p.E287Rfs*2	ENST00000267163	NM_000321.2	287	Gag/ag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061106	38061106	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	131	565	0	ENST00000250448.2:c.883A>G	p.Lys295Glu	p.K295E	ENST00000250448	NM_004496.3	295	Aag/Gag																																																																															
ERF	2077	MSKCC	GRCh37	19	42754095	42754095	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0073158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	224	467	0	ENST00000222329.4:c.258-1G>T		p.X86_splice	ENST00000222329	NM_006494.2	86																																																																																
SPRED1	161742	MSKCC	GRCh37	15	38641695	38641695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	21	465	0	ENST00000299084.4:c.655G>A	p.Glu219Lys	p.E219K	ENST00000299084	NM_152594.2	219	Gaa/Aaa																																																																															
TET1	80312	MSKCC	GRCh37	10	70333972	70333972	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073160-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	35	519	0	ENST00000373644.4:c.1877A>C	p.Glu626Ala	p.E626A	ENST00000373644	NM_030625.2	626	gAg/gCg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375319	15375319	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1196808917		P-0073161-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	10	584	2	ENST00000263377.2:c.1108G>A	p.Ala370Thr	p.A370T	ENST00000263377	NM_058243.2	370	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0073163-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	97	429	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043438	180043438	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373876329		P-0073163-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	46	643	0	ENST00000261937.6:c.3148G>A	p.Val1050Met	p.V1050M	ENST00000261937	NM_182925.4	1050	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0073163-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	41	305	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0073164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	95	548	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259554	55259554	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs397517134		P-0073164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	100	555	0	ENST00000275493.2:c.2612C>G	p.Ala871Gly	p.A871G	ENST00000275493	NM_005228.3	871	gCa/gGa																																																																															
MED12	9968	MSKCC	GRCh37	X	70360588	70360588	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0073164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	140	744	0	ENST00000374080.3:c.6148G>T	p.Glu2050Ter	p.E2050*	ENST00000374080		2050	Gag/Tag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0073165-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	24	651	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0072988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	101	558	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028847	47028847	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	102	481	0	ENST00000329236.7:c.151C>T	p.Gln51Ter	p.Q51*	ENST00000329236	NM_001204466.1	51	Cag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108115726	108115726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			70	294	171	0	ENST00000278616.4:c.874C>T	p.Pro292Ser	p.P292S	ENST00000278616	NM_000051.3	292	Ccg/Tcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0072998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	137	173	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40379687	40379687	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	234	267	0	ENST00000293328.3:c.145G>C	p.Asp49His	p.D49H	ENST00000293328	NM_012448.3	49	Gat/Cat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584552	48584552	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0072998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	283	351	0	ENST00000342988.3:c.725C>G	p.Ser242Ter	p.S242*	ENST00000342988	NM_005359.5	242	tCa/tGa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs878853247		P-0072998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	299	395	0	ENST00000326873.7:c.709G>T	p.Asp237Tyr	p.D237Y	ENST00000326873	NM_000455.4	237	Gac/Tac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735461	40735461	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1222754595		P-0072998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	263	291	0	ENST00000373198.4:c.3412C>A	p.Leu1138Ile	p.L1138I	ENST00000373198	NM_133170.3	1138	Ctc/Atc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480469	89480469	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	243	274	0	ENST00000336596.2:c.2306G>T	p.Arg769Leu	p.R769L	ENST00000336596	NM_005233.5	769	cGt/cTt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512425	149512425	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	304	443	0	ENST00000261799.4:c.1015G>C	p.Val339Leu	p.V339L	ENST00000261799	NM_002609.3	339	Gtg/Ctg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200134	138200134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	374	489	0	ENST00000237289.4:c.1552C>A	p.Pro518Thr	p.P518T	ENST00000237289	NM_001270507.1	518	Ccc/Acc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8524949	8524949	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs771217760		P-0072998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	170	219	0	ENST00000356435.5:c.655G>T	p.Ala219Ser	p.A219S	ENST00000356435		219	Gct/Tct																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230459235	230459235	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	307	394	0	ENST00000525115.1:c.1304C>A	p.Ala435Glu	p.A435E	ENST00000525115		435	gCg/gAg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114219	115114219	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	299	324	0	ENST00000257566.3:c.998A>T	p.Asn333Ile	p.N333I	ENST00000257566	NM_016569.3	333	aAt/aTt																																																																															
MGA	23269	MSKCC	GRCh37	15	42041923	42041923	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	541	283	0	ENST00000219905.7:c.6118G>T	p.Glu2040Ter	p.E2040*	ENST00000219905	NM_001164273.1	2040	Gaa/Taa																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128044309	128044309	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	268	328	0	ENST00000285398.2:c.1312A>G	p.Met438Val	p.M438V	ENST00000285398	NM_000122.1	438	Atg/Gtg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626366	12626366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	284	372	0	ENST00000251849.4:c.1783G>C	p.Glu595Gln	p.E595Q	ENST00000251849	NM_002880.3	595	Gag/Cag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164540	47164540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	208	255	0	ENST00000409792.3:c.1586G>A	p.Arg529Lys	p.R529K	ENST00000409792	NM_014159.6	529	aGa/aAa																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664727	138664727	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	263	280	0	ENST00000330315.3:c.838C>A	p.Pro280Thr	p.P280T	ENST00000330315	NM_023067.3	280	Ccg/Acg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157454339	157454339	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0072998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	190	247	0	ENST00000346085.5:c.2550del	p.Gly851ValfsTer63	p.G851Vfs*63	ENST00000346085	NM_020732.3	850	cAa/ca																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38173504	38173504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	184	230	0	ENST00000317025.8:c.1912A>G	p.Thr638Ala	p.T638A	ENST00000317025	NM_023034.1	638	Act/Gct																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374788	118374789	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0073001-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	43	505	0	ENST00000534358.1:c.8185_8186del	p.Ser2729Ter	p.S2729*	ENST00000534358	NM_005933.3	2727	acAGag/acag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114179	115114180	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0073001-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	82	436	0	ENST00000257566.3:c.1037dup	p.Asn347GlnfsTer28	p.N347Qfs*28	ENST00000257566	NM_016569.3	346	ttc/ttTc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696433	47696433	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0073005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	213	430	0	ENST00000347630.2:c.390C>G	p.Asp130Glu	p.D130E	ENST00000347630	NM_001007230.1	130	gaC/gaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0073017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	53	364	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0073017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	28	208	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71019945	71019945	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	72	373	0	ENST00000318789.4:c.1664T>G	p.Leu555Arg	p.L555R	ENST00000318789	NM_032682.5	555	cTt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057520008		P-0073022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	336	532	0	ENST00000269305.4:c.613T>C	p.Tyr205His	p.Y205H	ENST00000269305	NM_001126112.2	205	Tat/Cat																																																																															
GATA1	2623	MSKCC	GRCh37	X	48651591	48651591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	66	476	0	ENST00000376670.3:c.757C>T	p.Arg253Trp	p.R253W	ENST00000376670	NM_002049.3	253	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876658483		P-0073025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	381	418	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532555	63532555	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730881401		P-0073025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			898	333	439	1	ENST00000307078.5:c.2024G>A	p.Arg675His	p.R675H	ENST00000307078	NM_004655.3	675	cGt/cAt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468136	120468136	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777091426		P-0073025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	344	442	1	ENST00000256646.2:c.4303C>T	p.Arg1435Trp	p.R1435W	ENST00000256646	NM_024408.3	1435	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444779	49444779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0073025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	352	519	2	ENST00000301067.7:c.2687G>A	p.Gly896Glu	p.G896E	ENST00000301067	NM_003482.3	896	gGa/gAa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943721	71943723	+	inframe_deletion	In_Frame_Del	DEL	GCA	GCA	-			P-0073025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	325	416	3	ENST00000298229.2:c.1766_1768del	p.Gln589del	p.Q589del	ENST00000298229	NM_001567.3	588	cgGCAg/cgg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720843	89720855	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGCCAACCGAT	AAAGCCAACCGAT	-			P-0073025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			49	62	100	0	ENST00000371953.3:c.995_1007del	p.Lys332ThrfsTer8	p.K332Tfs*8	ENST00000371953	NM_000314.4	332	AAAGCCAACCGATac/ac																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943291	71943291	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0073025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	297	437	1	ENST00000298229.2:c.1627del	p.Ala543LeufsTer16	p.A543Lfs*16	ENST00000298229	NM_001567.3	541	aaG/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0073051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			29	32	89	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919125	178919125	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0073051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	137	195	0	ENST00000263967.3:c.611del	p.Lys204SerfsTer6	p.K204Sfs*6	ENST00000263967	NM_006218.2	204	Aag/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0073056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	84	238	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255601	16255601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	126	293	0	ENST00000375759.3:c.2866G>A	p.Gly956Ser	p.G956S	ENST00000375759	NM_015001.2	956	Ggc/Agc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467203	25467203	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	107	294	0	ENST00000264709.3:c.1672T>A	p.Phe558Ile	p.F558I	ENST00000264709	NM_175629.2	558	Ttt/Att																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546827	9546827	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0073056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	91	300	0	ENST00000353224.5:c.1195T>C	p.Ser399Pro	p.S399P	ENST00000353224	NM_177990.2	399	Tcc/Ccc																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67624635	67624635	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0073056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	71	181	0	ENST00000272342.5:c.55A>C	p.Lys19Gln	p.K19Q	ENST00000272342	NM_019002.3	19	Aaa/Caa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0073060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	75	217	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0073041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			897	225	507	0	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372095	45372095	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0073041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	149	366	0	ENST00000262160.6:c.1074G>C	p.Gln358His	p.Q358H	ENST00000262160	NM_005901.5	358	caG/caC																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944901	31944901	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0073041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	67	266	0	ENST00000340398.3:c.200T>A	p.Phe67Tyr	p.F67Y	ENST00000340398	NM_001013699.2	67	tTc/tAc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101904904	101904905	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0073041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	68	336	0	ENST00000374994.4:c.892_893del	p.Thr298CysfsTer34	p.T298Cfs*34	ENST00000374994	NM_004612.2	298	ACt/t																																																																															
WT1	7490	MSKCC	GRCh37	11	32413520	32413520	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0073041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	41	336	0	ENST00000332351.3:c.1430C>T	p.Thr477Ile	p.T477I	ENST00000332351	NM_024426.4	477	aCa/aTa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646792	23646792	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0073041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	69	374	1	ENST00000261584.4:c.1075A>T	p.Ser359Cys	p.S359C	ENST00000261584	NM_024675.3	359	Agt/Tgt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741616	145741616	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0073041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			998	149	585	0	ENST00000428558.2:c.887A>G	p.Glu296Gly	p.E296G	ENST00000428558	NM_004260.3	296	gAa/gGa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86674357	86674357	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0073041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	62	217	0	ENST00000274376.6:c.2487+2T>A		p.X829_splice	ENST00000274376	NM_002890.2	829																																																																																
FLT4	2324	MSKCC	GRCh37	5	180057268	180057268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0073041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			711	114	532	0	ENST00000261937.6:c.470C>T	p.Pro157Leu	p.P157L	ENST00000261937	NM_182925.4	157	cCc/cTc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98224206	98224206	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750373573		P-0073042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	128	458	0	ENST00000331920.6:c.2635G>A	p.Asp879Asn	p.D879N	ENST00000331920	NM_000264.3	879	Gat/Aat																																																																															
ABL1	25	MSKCC	GRCh37	9	133755456	133755456	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0073042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	306	412	0	ENST00000318560.5:c.1425T>G	p.Cys475Trp	p.C475W	ENST00000318560	NM_005157.4	475	tgT/tgG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577591	7577591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	23	309	0	ENST00000269305.4:c.690del	p.Thr231ProfsTer16	p.T231Pfs*16	ENST00000269305	NM_001126112.2	230	acC/ac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691187		P-0071329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	57	391	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	36	233	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023968	27023975	+	frameshift_variant	Frame_Shift_Del	DEL	CCACGCGC	CCACGCGC	-			P-0072285-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			170	170	373	0	ENST00000324856.7:c.1077_1084del	p.Ala360GlufsTer37	p.A360Efs*37	ENST00000324856	NM_006015.4	358	caCCACGCGCcc/cacc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31449514	31449514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072285-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			206	100	191	0	ENST00000344624.3:c.2695C>T	p.His899Tyr	p.H899Y	ENST00000344624		899	Cat/Tat																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061342	38061342	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072285-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	233	464	0	ENST00000250448.2:c.647A>G	p.Asn216Ser	p.N216S	ENST00000250448	NM_004496.3	216	aAc/aGc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061259	38061261	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0072285-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			458	237	537	0	ENST00000250448.2:c.728_730del	p.Tyr243del	p.Y243del	ENST00000250448	NM_004496.3	243	tACTgg/tgg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980500	1980500	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072285-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			512	308	506	0	ENST00000382895.3:c.3962C>G	p.Ser1321Cys	p.S1321C	ENST00000382895	NM_133330.2	1321	tCc/tGc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8492931	8492931	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201412075		P-0072779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	25	265	0	ENST00000356435.5:c.2398G>A	p.Val800Ile	p.V800I	ENST00000356435		800	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578226	7578227	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0072779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	120	340	0	ENST00000269305.4:c.622_623insGT	p.Asp208GlyfsTer40	p.D208Gfs*40	ENST00000269305	NM_001126112.2	208	gac/gGTac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	-	rs121913425		P-0072818-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	99	285	0	ENST00000275493.2:c.2237_2251del	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gca																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431509	121431509	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0072818-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	59	379	0	ENST00000257555.6:c.713G>T	p.Arg238Met	p.R238M	ENST00000257555		238	aGg/aTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900762	3900762	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1020621997		P-0072818-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	56	367	0	ENST00000262367.5:c.334A>G	p.Met112Val	p.M112V	ENST00000262367	NM_004380.2	112	Atg/Gtg																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29197623	29197623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072818-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	83	472	0	ENST00000240100.2:c.571C>G	p.His191Asp	p.H191D	ENST00000240100	NM_001394.6	191	Cac/Gac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061225	38061239	+	inframe_deletion	In_Frame_Del	DEL	TCGAACATGTTGCCG	TCGAACATGTTGCCG	-			P-0072827-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	117	304	0	ENST00000250448.2:c.750_764del	p.Gly251_Glu255del	p.G251_E255del	ENST00000250448	NM_004496.3	250	tcCGGCAACATGTTCGAg/tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0072828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	44	552	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0072828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	54	401	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0072828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	50	393	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361207	66361207	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1370682403		P-0072828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	20	479	0	ENST00000273854.3:c.965G>A	p.Cys322Tyr	p.C322Y	ENST00000273854	NM_004439.5	322	tGt/tAt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737684	145737684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	21	624	0	ENST00000428558.2:c.3079C>T	p.Leu1027Phe	p.L1027F	ENST00000428558	NM_004260.3	1027	Ctt/Ttt																																																																															
PGR	5241	MSKCC	GRCh37	11	100999634	100999634	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	16	465	0	ENST00000325455.5:c.168C>G	p.Asp56Glu	p.D56E	ENST00000325455	NM_001202474.3	56	gaC/gaG																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029192	14029192	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	41	463	0	ENST00000311895.7:c.1403G>C	p.Arg468Thr	p.R468T	ENST00000311895	NM_005236.2	468	aGa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs28934577		P-0027612-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			239	283	351	0	ENST00000269305.4:c.770T>A	p.Leu257Gln	p.L257Q	ENST00000269305	NM_001126112.2	257	cTg/cAg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223533	53223533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027612-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			367	28	210	0	ENST00000375401.3:c.3826G>A	p.Glu1276Lys	p.E1276K	ENST00000375401	NM_004187.3	1276	Gag/Aag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011212	12011212	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027612-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			112	99	218	0	ENST00000353533.5:c.622del	p.Ile208SerfsTer3	p.I208Sfs*3	ENST00000353533	NM_003010.3	207	Aaa/aa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144802	11144802	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027612-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			224	319	385	0	ENST00000344626.4:c.3877G>T	p.Glu1293Ter	p.E1293*	ENST00000344626	NM_003072.3	1293	Gaa/Taa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518036	8518036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027612-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			306	90	344	0	ENST00000356435.5:c.1355G>T	p.Arg452Ile	p.R452I	ENST00000356435		452	aGa/aTa																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987220	36987220	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072443-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			232	48	380	0	ENST00000354822.5:c.469del	p.Arg157AlafsTer9	p.R157Afs*9	ENST00000354822	NM_001079668.2	157	Cgc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0072443-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			154	31	197	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0072748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	334	292	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0072748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	14	129	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0072748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	22	13	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0072748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	303	253	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268968	55268968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	434	358	0	ENST00000275493.2:c.3034G>T	p.Asp1012Tyr	p.D1012Y	ENST00000275493	NM_005228.3	1012	Gat/Tat																																																																															
CBL	867	MSKCC	GRCh37	11	119158635	119158635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	30	73	0	ENST00000264033.4:c.2015C>T	p.Ala672Val	p.A672V	ENST00000264033	NM_005188.3	672	gCc/gTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528744	8528744	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	82	282	0	ENST00000356435.5:c.388A>G	p.Met130Val	p.M130V	ENST00000356435		130	Atg/Gtg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429988	78429988	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	35	49	0	ENST00000370768.2:c.891G>C	p.Met297Ile	p.M297I	ENST00000370768	NM_003902.3	297	atG/atC																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0072776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	80	405	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
ALK	238	MSKCC	GRCh37	2	29498333	29498333	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	184	396	0	ENST00000389048.3:c.1847del	p.Gly616AspfsTer49	p.G616Dfs*49	ENST00000389048	NM_004304.4	616	gGa/ga																																																																															
MGA	23269	MSKCC	GRCh37	15	41991139	41991139	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0072776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	151	153	0	ENST00000219905.7:c.2092G>T	p.Gly698Cys	p.G698C	ENST00000219905	NM_001164273.1	698	Ggt/Tgt																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128036920	128036920	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1034515602		P-0072776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	110	247	0	ENST00000285398.2:c.1559G>A	p.Arg520Gln	p.R520Q	ENST00000285398	NM_000122.1	520	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0072776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	123	272	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031946	26031946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			814	77	535	0	ENST00000244661.2:c.343G>A	p.Ala115Thr	p.A115T	ENST00000244661	NM_003537.3	115	Gct/Act																																																																															
CIC	23152	MSKCC	GRCh37	19	42799067	42799067	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	44	400	0	ENST00000575354.2:c.4551G>T	p.Lys1517Asn	p.K1517N	ENST00000575354	NM_015125.3	1517	aaG/aaT																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701882	43701882	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	46	303	0	ENST00000382044.4:c.5363G>C	p.Gly1788Ala	p.G1788A	ENST00000382044	NM_001141980.1	1788	gGa/gCa																																																																															
ATM	472	MSKCC	GRCh37	11	108151828	108151828	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0072776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	164	189	0	ENST00000278616.4:c.3509A>C	p.Lys1170Thr	p.K1170T	ENST00000278616	NM_000051.3	1170	aAa/aCa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828497	72828497	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	172	461	0	ENST00000268489.5:c.8084G>T	p.Arg2695Leu	p.R2695L	ENST00000268489	NM_006885.3	2695	cGg/cTg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323180	31323180	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			848	53	520	0	ENST00000412585.2:c.809C>G	p.Ala270Gly	p.A270G	ENST00000412585	NM_005514.6	270	gCt/gGt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149452911	149452911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	136	390	0	ENST00000286301.3:c.1035C>A	p.His345Gln	p.H345Q	ENST00000286301	NM_005211.3	345	caC/caA																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251957	153251957	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	35	190	0	ENST00000281708.4:c.1049del	p.Pro350HisfsTer27	p.P350Hfs*27	ENST00000281708	NM_033632.3	350	cCa/ca																																																																															
ATM	472	MSKCC	GRCh37	11	108188148	108188148	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	98	193	0	ENST00000278616.4:c.6248del	p.Gly2083AspfsTer13	p.G2083Dfs*13	ENST00000278616	NM_000051.3	2083	Gga/ga																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324862	31324862	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0072776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	39	213	0	ENST00000412585.2:c.73+1G>T		p.X25_splice	ENST00000412585	NM_005514.6	25																																																																																
FLT1	2321	MSKCC	GRCh37	13	28897044	28897044	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	48	378	0	ENST00000282397.4:c.2836G>C	p.Glu946Gln	p.E946Q	ENST00000282397	NM_002019.4	946	Gag/Cag																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308110	30308110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	189	471	0	ENST00000262643.3:c.247G>T	p.Asp83Tyr	p.D83Y	ENST00000262643	NM_001238.2	83	Gat/Tat																																																																															
PGR	5241	MSKCC	GRCh37	11	100999107	100999107	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs571355035		P-0072776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	122	424	0	ENST00000325455.5:c.695C>T	p.Ser232Phe	p.S232F	ENST00000325455	NM_001202474.3	232	tCt/tTt																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61305077	61305077	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1198847924		P-0072776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	121	461	0	ENST00000341074.5:c.1049T>C	p.Val350Ala	p.V350A	ENST00000341074	NM_002974.2	350	gTa/gCa																																																																															
WT1	7490	MSKCC	GRCh37	11	32417883	32417883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	78	429	0	ENST00000332351.3:c.1169C>T	p.Pro390Leu	p.P390L	ENST00000332351	NM_024426.4	390	cCc/cTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220644	1220644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1167609100		P-0072874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	237	422	0	ENST00000326873.7:c.662C>T	p.Pro221Leu	p.P221L	ENST00000326873	NM_000455.4	221	cCg/cTg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484611	57484611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	188	382	0	ENST00000371085.3:c.695G>A	p.Arg232His	p.R232H	ENST00000371085	NM_000516.4	232	cGc/cAc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273105	18273105	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	149	438	1	ENST00000222254.8:c.1000del	p.Asp334ThrfsTer7	p.D334Tfs*7	ENST00000222254	NM_005027.3	332	tGg/tg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931452	131931452	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772667708		P-0072874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	299	280	8	ENST00000265335.6:c.2165del	p.Lys722ArgfsTer14	p.K722Rfs*14	ENST00000265335		719	ctA/ct																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959241	2959241	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369433934		P-0072874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			843	119	328	0	ENST00000396946.4:c.2275C>T	p.Arg759Trp	p.R759W	ENST00000396946	NM_032415.4	759	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112178606	112178606	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1311878041		P-0072874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	194	299	0	ENST00000257430.4:c.7315C>T	p.Arg2439Cys	p.R2439C	ENST00000257430	NM_000038.5	2439	Cgc/Tgc																																																																															
CIC	23152	MSKCC	GRCh37	19	42794925	42794925	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768549918		P-0072874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	138	412	0	ENST00000575354.2:c.2005G>A	p.Ala669Thr	p.A669T	ENST00000575354	NM_015125.3	669	Gcc/Acc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47639551	47639551	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs587779169		P-0072874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			81	78	135	0	ENST00000233146.2:c.646-2A>G		p.X216_splice	ENST00000233146	NM_000251.2	216																																																																																
TET2	54790	MSKCC	GRCh37	4	106197435	106197435	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	121	304	2	ENST00000380013.4:c.5772del	p.Ala1925ProfsTer25	p.A1925Pfs*25	ENST00000380013	NM_001127208.2	1923	gAa/ga																																																																															
POLE	5426	MSKCC	GRCh37	12	133219879	133219879	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	148	420	0	ENST00000320574.5:c.4482G>T	p.Gln1494His	p.Q1494H	ENST00000320574	NM_006231.2	1494	caG/caT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0072874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	146	160	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240702	55240702	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	339	413	0	ENST00000275493.2:c.1946G>T	p.Gly649Val	p.G649V	ENST00000275493	NM_005228.3	649	gGg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845357	151845357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	310	394	0	ENST00000262189.6:c.13655G>A	p.Ser4552Asn	p.S4552N	ENST00000262189	NM_170606.2	4552	aGc/aAc																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33680971	33680971	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746600587		P-0072874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	182	279	0	ENST00000308377.4:c.1306C>T	p.Arg436Trp	p.R436W	ENST00000308377	NM_152270.3	436	Cgg/Tgg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747934	41747934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	98	377	0	ENST00000226382.2:c.835C>T	p.Pro279Ser	p.P279S	ENST00000226382	NM_003924.3	279	Ccc/Tcc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53225982	53225982	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782171830		P-0072874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	140	475	0	ENST00000375401.3:c.2867C>T	p.Ala956Val	p.A956V	ENST00000375401	NM_004187.3	956	gCg/gTg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117724395	117724395	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	246	299	0	ENST00000368508.3:c.484A>T	p.Thr162Ser	p.T162S	ENST00000368508	NM_002944.2	162	Act/Tct																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602404	10602404	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	311	469	0	ENST00000171111.5:c.1174del	p.Ala392ProfsTer8	p.A392Pfs*8	ENST00000171111	NM_203500.1	392	Gcc/cc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0072875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	28	280	0				ENST00000310581	NM_198253.2																																																																																	
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0072875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	57	248	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873595	35873595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	32	308	0	ENST00000303115.3:c.551C>A	p.Ser184Tyr	p.S184Y	ENST00000303115	NM_002185.3	184	tCc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573983	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AT			P-0072875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	41	279	1	ENST00000269305.4:c.1044_1045delinsAT	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	348	ttGGaa/ttATaa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25991711	25991711	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	44	332	0	ENST00000435504.4:c.531G>T	p.Lys177Asn	p.K177N	ENST00000435504		177	aaG/aaT																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500844	149500844	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	34	385	0	ENST00000261799.4:c.2386C>A	p.Pro796Thr	p.P796T	ENST00000261799	NM_002609.3	796	Cca/Aca																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968197	134968197	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs780597750		P-0072875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	51	406	0	ENST00000398015.3:c.2710G>T	p.Asp904Tyr	p.D904Y	ENST00000398015	NM_004441.4	904	Gac/Tac																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134644720	134644720	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0072875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	60	317	0	ENST00000398015.3:c.121G>T	p.Gly41Trp	p.G41W	ENST00000398015	NM_004441.4	41	Ggg/Tgg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876103	35876103	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0072875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	40	302	0	ENST00000303115.3:c.895A>T	p.Asn299Tyr	p.N299Y	ENST00000303115	NM_002185.3	299	Aat/Tat																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56772378	56772378	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	47	299	0	ENST00000337432.4:c.232A>G	p.Thr78Ala	p.T78A	ENST00000337432	NM_058216.2	78	Aca/Gca																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430302	181430302	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	29	226	0	ENST00000325404.1:c.154T>C	p.Ser52Pro	p.S52P	ENST00000325404	NM_003106.3	52	Tcc/Ccc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187083	11187083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	50	309	0	ENST00000361445.4:c.6335C>T	p.Ser2112Leu	p.S2112L	ENST00000361445	NM_004958.3	2112	tCa/tTa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912094	50912094	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0072875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	66	407	0	ENST00000440232.2:c.1828A>T	p.Ile610Phe	p.I610F	ENST00000440232	NM_002691.3	610	Atc/Ttc																																																																															
NADK	65220	MSKCC	GRCh37	1	1696756	1696756	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	53	314	0	ENST00000341426.5:c.90G>C	p.Glu30Asp	p.E30D	ENST00000341426	NM_023018.4	30	gaG/gaC																																																																															
ATRX	546	MSKCC	GRCh37	X	76764070	76764070	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	64	334	0	ENST00000373344.5:c.7238G>T	p.Arg2413Met	p.R2413M	ENST00000373344	NM_000489.3	2413	aGg/aTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100118	157100118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			789	61	440	0	ENST00000346085.5:c.1055G>A	p.Gly352Asp	p.G352D	ENST00000346085	NM_020732.3	352	gGc/gAc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740623	145740623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	92	463	0	ENST00000428558.2:c.1394C>G	p.Thr465Arg	p.T465R	ENST00000428558	NM_004260.3	465	aCg/aGg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79966076	79966076	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	30	298	0	ENST00000265081.6:c.740T>G	p.Val247Gly	p.V247G	ENST00000265081	NM_002439.4	247	gTt/gGt																																																																															
ATRX	546	MSKCC	GRCh37	X	76938930	76938930	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	46	306	0	ENST00000373344.5:c.1818G>T	p.Gln606His	p.Q606H	ENST00000373344	NM_000489.3	606	caG/caT																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023132	31023133	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0072875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	58	398	0	ENST00000375687.4:c.2617_2618delinsT	p.Pro873PhefsTer3	p.P873Ffs*3	ENST00000375687	NM_015338.5	873	CCt/Tt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	244	373	1	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259148	89259148	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	95	316	0	ENST00000336596.2:c.292G>T	p.Glu98Ter	p.E98*	ENST00000336596	NM_005233.5	98	Gag/Tag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	30956859	30956859	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			746	83	320	0	ENST00000375687.4:c.185C>G	p.Ser62Cys	p.S62C	ENST00000375687	NM_015338.5	62	tCc/tGc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16046984	16046984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	34	246	0	ENST00000268712.3:c.1109C>T	p.Ser370Leu	p.S370L	ENST00000268712	NM_006311.3	370	tCa/tTa																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675062	40675062	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1056073891		P-0072919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	173	291	0	ENST00000249776.8:c.26T>C	p.Leu9Pro	p.L9P	ENST00000249776	NM_033286.3	9	cTg/cCg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16237632	16237632	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	97	254	0	ENST00000375759.3:c.1079A>G	p.Lys360Arg	p.K360R	ENST00000375759	NM_015001.2	360	aAg/aGg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426708	212426708	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0072919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	146	369	0	ENST00000342788.4:c.2407T>A	p.Cys803Ser	p.C803S	ENST00000342788	NM_005235.2	803	Tgc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578153	7578190	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAGACCCCAGTTGCAAACCAGACCTCAGGCGGCTCAT	AGAGACCCCAGTTGCAAACCAGACCTCAGGCGGCTCAT	-			P-0072919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	284	411	0	ENST00000269305.4:c.659_672+24del		p.X220_splice	ENST00000269305	NM_001126112.2	220																																																																																
FLT1	2321	MSKCC	GRCh37	13	28897073	28897073	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	83	316	0	ENST00000282397.4:c.2807T>C	p.Leu936Pro	p.L936P	ENST00000282397	NM_002019.4	936	cTa/cCa																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62311235	62311235	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	G			P-0072919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	70	332	0	ENST00000482936.1:c.1071C>G	p.Ile357Met	p.I357M	ENST00000482936		357	atC/atG																																																																															
ASXL1	171023	MSKCC	GRCh37	20	30955533	30955533	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0072919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	115	218	0	ENST00000375687.4:c.143+1G>T		p.X48_splice	ENST00000375687	NM_015338.5	48																																																																																
WT1	7490	MSKCC	GRCh37	11	32456483	32456483	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	81	254	0	ENST00000332351.3:c.409C>G	p.His137Asp	p.H137D	ENST00000332351	NM_024426.4	137	Cac/Gac																																																																															
BARD1	580	MSKCC	GRCh37	2	215609837	215609837	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	110	284	0	ENST00000260947.4:c.1857G>T	p.Lys619Asn	p.K619N	ENST00000260947	NM_000465.2	619	aaG/aaT																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355852	73355852	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs565866518		P-0072919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	116	275	0	ENST00000377767.4:c.119G>T	p.Gly40Val	p.G40V	ENST00000377767	NM_014953.3	40	gGa/gTa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206940	162206940	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0072919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	194	317	0	ENST00000366898.1:c.735G>T	p.Arg245Ser	p.R245S	ENST00000366898	NM_004562.2	245	agG/agT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056264	180056264	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	189	350	1	ENST00000261937.6:c.980T>C	p.Val327Ala	p.V327A	ENST00000261937	NM_182925.4	327	gTg/gCg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038527	47038527	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	65	180	0	ENST00000329236.7:c.458G>C	p.Arg153Pro	p.R153P	ENST00000329236	NM_001204466.1	153	cGa/cCa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032218	26032218	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1257	334	448	0	ENST00000244661.2:c.71A>G	p.Lys24Arg	p.K24R	ENST00000244661	NM_003537.3	24	aAg/aGg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098575	11098575	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	263	410	0	ENST00000344626.4:c.1093G>T	p.Glu365Ter	p.E365*	ENST00000344626	NM_003072.3	365	Gag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120489	70120489	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			888	154	382	0	ENST00000245479.2:c.1491C>G	p.His497Gln	p.H497Q	ENST00000245479	NM_000346.3	497	caC/caG																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211292	36211293	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0072919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1023	186	407	0	ENST00000222270.7:c.1046dup	p.Gly350ArgfsTer14	p.G350Rfs*14	ENST00000222270	NM_014727.1	348	cag/caGg																																																																															
NF1	4763	MSKCC	GRCh37	17	29592354	29592354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	71	208	2	ENST00000358273.4:c.4832G>T	p.Arg1611Leu	p.R1611L	ENST00000358273	NM_001042492.2	1611	cGg/cTg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23637699	23637699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	68	257	0	ENST00000261584.4:c.2606C>T	p.Ser869Phe	p.S869F	ENST00000261584	NM_024675.3	869	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577527	7577527	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	121	437	0	ENST00000269305.4:c.754del	p.Leu252SerfsTer93	p.L252Sfs*93	ENST00000269305	NM_001126112.2	252	Ctc/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0072921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	66	252	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575184	48575185	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0072921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	60	236	0	ENST00000342988.3:c.383_384dup	p.Asn129Ter	p.N129*	ENST00000342988	NM_005359.5	126	-/TG																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858192	152858220	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTGCAAAGACACGTGTGTCAGCCTTTAGG	CTGCAAAGACACGTGTGTCAGCCTTTAGG	-			P-0072932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	86	305	0	ENST00000406277.2:c.424-29_424-1del		p.X142_splice	ENST00000406277	NM_152274.4	142																																																																																
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0072939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	204	305	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411197	63411197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	332	430	0	ENST00000330258.3:c.1970G>T	p.Arg657Met	p.R657M	ENST00000330258	NM_152424.3	657	aGg/aTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1223012	1223012	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	205	405	0	ENST00000326873.7:c.949G>T	p.Glu317Ter	p.E317*	ENST00000326873	NM_000455.4	317	Gaa/Taa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120912	115120912	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1410475056		P-0072939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	186	392	0	ENST00000257566.3:c.94G>T	p.Ala32Ser	p.A32S	ENST00000257566	NM_016569.3	32	Gcg/Tcg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31449520	31449520	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1360547844		P-0072939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	100	268	1	ENST00000344624.3:c.2689A>G	p.Met897Val	p.M897V	ENST00000344624		897	Atg/Gtg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53241046	53241046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	205	329	0	ENST00000375401.3:c.1165A>G	p.Thr389Ala	p.T389A	ENST00000375401	NM_004187.3	389	Acc/Gcc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86628380	86628380	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0072939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	236	324	0	ENST00000274376.6:c.749C>G	p.Ser250Ter	p.S250*	ENST00000274376	NM_002890.2	250	tCa/tGa																																																																															
ATRX	546	MSKCC	GRCh37	X	76888825	76888826	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	211	330	0	ENST00000373344.5:c.5003dup	p.Met1668IlefsTer17	p.M1668Ifs*17	ENST00000373344	NM_000489.3	1668	atg/atTg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17384962	17384962	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	221	455	0	ENST00000359435.4:c.512A>G	p.Tyr171Cys	p.Y171C	ENST00000359435	NM_001033549.1	171	tAt/tGt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562095	21562095	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	286	424	0	ENST00000382592.4:c.1824G>T	p.Gln608His	p.Q608H	ENST00000382592	NM_014572.2	608	caG/caT																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226953	53226953	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0072939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	189	315	0	ENST00000375401.3:c.2622G>T	p.Lys874Asn	p.K874N	ENST00000375401	NM_004187.3	874	aaG/aaT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0072942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	31	295	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	8	177	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453145	140453145	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs121913366		P-0071236-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			141	92	106	0	ENST00000288602.6:c.1790T>G	p.Leu597Arg	p.L597R	ENST00000288602	NM_004333.4	597	cTa/cGa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231387	5231387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071236-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			369	175	568	0	ENST00000357368.4:c.2089G>T	p.Val697Phe	p.V697F	ENST00000357368	NM_002850.3	697	Gtc/Ttc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115929	8115930	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0071567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	188	403	0	ENST00000346208.3:c.1276dup	p.Ser426PhefsTer81	p.S426Ffs*81	ENST00000346208		425	-/T																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982354	201982354	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766561608		P-0071567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	147	386	1	ENST00000359651.3:c.733C>T	p.Arg245Trp	p.R245W	ENST00000359651		245	Cgg/Tgg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295355	1295355	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0071567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	312	423	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0071584-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			345	172	347	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071584-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	129	419	0	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211184	2211185	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0071584-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	118	370	0	ENST00000398665.3:c.1442dup	p.Pro482AlafsTer72	p.P482Afs*72	ENST00000398665	NM_032482.2	480	acc/aCcc																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724329	112724330	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0071584-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			581	87	411	0	ENST00000369452.4:c.213_214del	p.Ile72GlnfsTer10	p.I72Qfs*10	ENST00000369452	NM_007373.3	71	acGAtc/actc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128018889	128018889	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0071584-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			430	97	287	0	ENST00000285398.2:c.1979A>C	p.Tyr660Ser	p.Y660S	ENST00000285398	NM_000122.1	660	tAc/tCc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117686800	117686800	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071584-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			322	144	268	0	ENST00000368508.3:c.2917C>G	p.Pro973Ala	p.P973A	ENST00000368508	NM_002944.2	973	Cct/Gct																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212589912	212589912	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071584-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			457	30	276	0	ENST00000342788.4:c.630G>T	p.Arg210Ser	p.R210S	ENST00000342788	NM_005235.2	210	agG/agT																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576120	88576120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147160868		P-0072579-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			575	57	391	0	ENST00000360948.2:c.1553G>A	p.Arg518His	p.R518H	ENST00000360948	NM_001012338.2	518	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519986		P-0072579-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			609	54	361	0	ENST00000269305.4:c.809T>C	p.Phe270Ser	p.F270S	ENST00000269305	NM_001126112.2	270	tTt/tCt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971124	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072579-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			570	56	404	0	ENST00000304494.5:c.234del	p.Thr79ProfsTer67	p.T79Pfs*67	ENST00000304494	NM_000077.4	78	ctC/ct																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852405	63852405	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072579-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			813	68	391	0	ENST00000279873.7:c.3183T>G	p.His1061Gln	p.H1061Q	ENST00000279873	NM_032199.2	1061	caT/caG																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625459	69625459	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072579-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			518	93	339	0	ENST00000334134.2:c.334A>G	p.Ser112Gly	p.S112G	ENST00000334134	NM_005247.2	112	Agc/Ggc																																																																															
EED	8726	MSKCC	GRCh37	11	85961433	85961433	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072579-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			672	40	366	0	ENST00000263360.6:c.210G>C	p.Lys70Asn	p.K70N	ENST00000263360	NM_003797.3	70	aaG/aaC																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905348	50905348	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072579-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			663	69	424	0	ENST00000440232.2:c.556G>T	p.Ala186Ser	p.A186S	ENST00000440232	NM_002691.3	186	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	89	391	0	ENST00000269305.4:c.799C>G	p.Arg267Gly	p.R267G	ENST00000269305	NM_001126112.2	267	Cgg/Ggg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971189	21971189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	95	447	0	ENST00000304494.5:c.169del	p.Ala57ProfsTer89	p.A57Pfs*89	ENST00000304494	NM_000077.4	57	Gcc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0072618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	62	225	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ERG	2078	MSKCC	GRCh37	21	39755441	39755441	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	145	652	0	ENST00000288319.7:c.1324T>C	p.Ser442Pro	p.S442P	ENST00000288319	NM_182918.3	442	Tct/Cct																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557268	187557268	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0072665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	123	548	0	ENST00000441802.2:c.4094T>G	p.Phe1365Cys	p.F1365C	ENST00000441802	NM_005245.3	1365	tTt/tGt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372523	55372523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	117	494	0	ENST00000297316.4:c.1213G>A	p.Ala405Thr	p.A405T	ENST00000297316	NM_022454.3	405	Gcg/Acg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932428	39932428	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0072665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	124	581	0	ENST00000378444.4:c.2171T>G	p.Met724Arg	p.M724R	ENST00000378444	NM_001123385.1	724	aTg/aGg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554558	63554558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	140	587	0	ENST00000307078.5:c.181G>A	p.Gly61Arg	p.G61R	ENST00000307078	NM_004655.3	61	Ggg/Agg																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316081	14316081	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	38	183	0	ENST00000256196.4:c.344A>C	p.Lys115Thr	p.K115T	ENST00000256196		115	aAg/aCg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221129	5221129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	126	553	0	ENST00000357368.4:c.3337G>A	p.Val1113Ile	p.V1113I	ENST00000357368	NM_002850.3	1113	Gtc/Atc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151896491	151896491	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0072668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	57	416	0	ENST00000262189.6:c.4146T>A	p.Ser1382Arg	p.S1382R	ENST00000262189	NM_170606.2	1382	agT/agA																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932575	39932583	+	frameshift_variant	Frame_Shift_Del	DEL	CCATGTAAG	CCATGTAAG	A			P-0072668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	142	421	0	ENST00000378444.4:c.2016_2024delinsT	p.Leu673GlnfsTer64	p.L673Qfs*64	ENST00000378444	NM_001123385.1	672	tcCTTACATGGc/tcTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0072744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	59	452	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856448	111856448	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1445323886		P-0072744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	48	365	0	ENST00000341259.2:c.499G>A	p.Gly167Arg	p.G167R	ENST00000341259	NM_005475.2	167	Gga/Aga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0072744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	44	202	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347593	89347593	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	53	399	0	ENST00000301030.4:c.5357del	p.Asn1786ThrfsTer177	p.N1786Tfs*177	ENST00000301030	NM_001256183.1	1786	aAc/ac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974707	21974723	+	frameshift_variant	Frame_Shift_Del	DEL	TGCGTTGGGCAGCGCCC	TGCGTTGGGCAGCGCCC	-			P-0072744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	40	386	0	ENST00000304494.5:c.104_120del	p.Gly35AlafsTer3	p.G35Afs*3	ENST00000304494	NM_000077.4	35	gGGGCGCTGCCCAACGCA/g																																																																															
MAX	4149	MSKCC	GRCh37	14	65569036	65569036	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs752477890		P-0072746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	45	231	0	ENST00000358664.4:c.22G>T	p.Glu8Ter	p.E8*	ENST00000358664	NM_002382.4	8	Gag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045002	47045003	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0072746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	80	186	0	ENST00000329236.7:c.2094_2095delinsTT	p.His699Tyr	p.H699Y	ENST00000329236	NM_001204466.1	698	cgGCac/cgTTac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0072746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	80	127	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829526	72829527	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			661	45	238	0	ENST00000268489.5:c.7054dup	p.Tyr2352LeufsTer4	p.Y2352Lfs*4	ENST00000268489	NM_006885.3	2352	tac/tTac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0072760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	102	400	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0072760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	40	174	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163789	152163789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	70	278	0	ENST00000206249.3:c.510C>A	p.Asp170Glu	p.D170E	ENST00000206249	NM_000125.3	170	gaC/gaA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0072763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	106	124	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0072763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	91	302	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488893	231488894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs567805129		P-0072763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	26	282	0	ENST00000295050.7:c.1263dup	p.Ile422TyrfsTer11	p.I422Yfs*11	ENST00000295050	NM_032018.5	419	aat/aaTt																																																																															
BARD1	580	MSKCC	GRCh37	2	215632288	215632288	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0072763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	53	295	0	ENST00000260947.4:c.1486T>G	p.Ser496Ala	p.S496A	ENST00000260947	NM_000465.2	496	Tca/Gca																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458494	12458494	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141683496		P-0072763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	30	417	0	ENST00000287820.6:c.1111G>A	p.Glu371Lys	p.E371K	ENST00000287820	NM_015869.4	371	Gag/Aag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610265	10610265	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0072862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	239	461	0	ENST00000171111.5:c.445G>T	p.Glu149Ter	p.E149*	ENST00000171111	NM_203500.1	149	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577499	7577499	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G	rs786203396		P-0072862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	151	356	0	ENST00000269305.4:c.782G>C	p.Ser261Thr	p.S261T	ENST00000269305	NM_001126112.2	261	aGt/aCt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123191804	123191805	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1392503050		P-0072862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	45	217	0	ENST00000218089.9:c.1400dup	p.Phe468LeufsTer5	p.F468Lfs*5	ENST00000218089	NM_001042749.1	465	gtt/gTtt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0072862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	311	245	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225342954	225342954	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	145	312	0	ENST00000264414.4:c.2138C>G	p.Ser713Cys	p.S713C	ENST00000264414	NM_003590.4	713	tCt/tGt																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898285	63898285	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	72	462	0	ENST00000295900.6:c.11G>C	p.Arg4Pro	p.R4P	ENST00000295900	NM_000333.3	4	cGg/cCg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367353	50367353	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0072862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	117	346	0	ENST00000331340.3:c.160G>T	p.Ala54Ser	p.A54S	ENST00000331340	NM_006060.4	54	Gcc/Tcc																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2096266	2096266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	150	345	0	ENST00000219066.1:c.241C>T	p.Pro81Ser	p.P81S	ENST00000219066	NM_002528.5	81	Ccc/Tcc																																																																															
BCL6	604	MSKCC	GRCh37	3	187442769	187442806	+	frameshift_variant	Frame_Shift_Del	DEL	TTCAGAGTCTGAAGGTGCCGGAAACGGGTGCCACAGAT	TTCAGAGTCTGAAGGTGCCGGAAACGGGTGCCACAGAT	-			P-0072862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	195	436	0	ENST00000232014.4:c.1900_1937del	p.Ile634GlufsTer15	p.I634Efs*15	ENST00000232014	NM_001130845.1	634	ATCTGTGGCACCCGTTTCCGGCACCTTCAGACTCTGAAg/g																																																																															
STK11	6794	MSKCC	GRCh37	19	1219380	1219381	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0072862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	183	373	0	ENST00000326873.7:c.432_433delinsTT	p.Glu145Ter	p.E145*	ENST00000326873	NM_000455.4	144	ccGGag/ccTTag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056193	27056193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	143	417	0	ENST00000324856.7:c.1189G>T	p.Gly397Trp	p.G397W	ENST00000324856	NM_006015.4	397	Ggg/Tgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906872	32906872	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0072862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	42	376	0	ENST00000380152.3:c.1257T>A	p.Cys419Ter	p.C419*	ENST00000380152		419	tgT/tgA																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929021	32929036	+	frameshift_variant	Frame_Shift_Del	DEL	TACAGAATCCAAATTT	TACAGAATCCAAATTT	-			P-0072862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	38	273	0	ENST00000380152.3:c.7034_7049del	p.Gln2345ProfsTer17	p.Q2345Pfs*17	ENST00000380152		2344	aTACAGAATCCAAATTTt/at																																																																															
MET	4233	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0072863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	91	339	0	ENST00000397752.3:c.3028+3A>G		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
EGFL7	51162	MSKCC	GRCh37	9	139564693	139564693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	60	328	0	ENST00000308874.7:c.482G>A	p.Cys161Tyr	p.C161Y	ENST00000308874		161	tGc/tAc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15383819	15383819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	51	380	0	ENST00000263377.2:c.92C>T	p.Ala31Val	p.A31V	ENST00000263377	NM_058243.2	31	gCc/gTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733279	40733279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201275244		P-0067432-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			227	46	515	0	ENST00000373198.4:c.3527G>A	p.Arg1176His	p.R1176H	ENST00000373198	NM_133170.3	1176	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0068309-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			191	281	473	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068309-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			902	231	354	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346859	89346859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068309-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			552	203	387	0	ENST00000301030.4:c.6091G>A	p.Glu2031Lys	p.E2031K	ENST00000301030	NM_001256183.1	2031	Gag/Aag																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0071414-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			122	148	300	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																															
POT1	25913	MSKCC	GRCh37	7	124503540	124503540	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071414-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			171	195	328	0	ENST00000357628.3:c.410G>T	p.Arg137Leu	p.R137L	ENST00000357628	NM_015450.2	137	cGt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0071735-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			161	94	238	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056650	26056650	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071735-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			465	142	345	0	ENST00000343677.2:c.7G>C	p.Glu3Gln	p.E3Q	ENST00000343677	NM_005319.3	3	Gag/Cag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602735	10602736	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0071735-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			182	386	445	0	ENST00000171111.5:c.842_843delinsCT	p.Leu281Pro	p.L281P	ENST00000171111	NM_203500.1	281	cTG/cCT																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562606	95562606	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0071735-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			461	276	385	0	ENST00000343455.3:c.4651G>T	p.Glu1551Ter	p.E1551*	ENST00000343455	NM_177438.2	1551	Gag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828567	72828567	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071735-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			300	150	444	0	ENST00000268489.5:c.8014G>C	p.Asp2672His	p.D2672H	ENST00000268489	NM_006885.3	2672	Gat/Cat																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11136975	11136975	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0071735-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			138	326	276	0	ENST00000344626.4:c.3169-1G>T		p.X1057_splice	ENST00000344626	NM_003072.3	1057																																																																																
PDCD1	5133	MSKCC	GRCh37	2	242794486	242794486	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071735-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			527	176	419	0	ENST00000334409.5:c.456del	p.Thr153GlnfsTer32	p.T153Qfs*32	ENST00000334409	NM_005018.2	152	ccC/cc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012880	176012880	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071735-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			174	33	200	0	ENST00000367669.3:c.1496A>T	p.Asp499Val	p.D499V	ENST00000367669	NM_022457.5	499	gAt/gTt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49932654	49932654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071735-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			186	330	470	0	ENST00000296474.3:c.3217G>T	p.Val1073Leu	p.V1073L	ENST00000296474	NM_002447.2	1073	Gtg/Ttg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828954	72828954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071735-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			414	198	495	0	ENST00000268489.5:c.7627G>A	p.Glu2543Lys	p.E2543K	ENST00000268489	NM_006885.3	2543	Gag/Aag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828372	72828372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071735-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			345	151	452	0	ENST00000268489.5:c.8209G>A	p.Glu2737Lys	p.E2737K	ENST00000268489	NM_006885.3	2737	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0072525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	57	190	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0072525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	154	442	0	ENST00000269305.4:c.470T>G	p.Val157Gly	p.V157G	ENST00000269305	NM_001126112.2	157	gTc/gGc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222943	36222943	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750345473		P-0072525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	147	465	0	ENST00000222270.7:c.5572C>T	p.Arg1858Cys	p.R1858C	ENST00000222270	NM_014727.1	1858	Cgt/Tgt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0072525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	50	254	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422123	47422123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072525-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	160	305	0	ENST00000404338.3:c.191G>A	p.Gly64Glu	p.G64E	ENST00000404338	NM_004491.4	64	gGa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573983	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0072530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	437	219	0	ENST00000269305.4:c.1044_1045delinsTT	p.Leu348_Glu349delinsPheTer	p.L348_E349delinsF*	ENST00000269305	NM_001126112.2	348	ttGGaa/ttTTaa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226823	2226823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	261	302	0	ENST00000398665.3:c.4303C>T	p.Pro1435Ser	p.P1435S	ENST00000398665	NM_032482.2	1435	Ccc/Tcc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485853	57485853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	237	229	0	ENST00000371085.3:c.1154G>A	p.Arg385His	p.R385H	ENST00000371085	NM_000516.4	385	cGc/cAc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518020	103518020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	175	201	0	ENST00000355739.4:c.1958G>A	p.Ser653Asn	p.S653N	ENST00000355739	NM_000123.3	653	aGt/aAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534473	187534473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	35	320	0	ENST00000441802.2:c.9253del	p.Asp3086IlefsTer30	p.D3086Ifs*30	ENST00000441802	NM_005245.3	3085	Ctt/tt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271322	38271322	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0072550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	60	421	0	ENST00000425967.3:c.2386G>T	p.Glu796Ter	p.E796*	ENST00000425967	NM_001174067.1	796	Gag/Tag																																																																															
MAD2L2	10459	MSKCC	GRCh37	1	11735176	11735176	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	31	364	0	ENST00000235310.3:c.557T>C	p.Leu186Pro	p.L186P	ENST00000235310		186	cTg/cCg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63661977	63661977	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	42	414	0	ENST00000279873.7:c.81C>G	p.Phe27Leu	p.F27L	ENST00000279873	NM_032199.2	27	ttC/ttG																																																																															
BRCA2	675	MSKCC	GRCh37	13	32950926	32950926	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0072550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	42	284	0	ENST00000380152.3:c.8752G>T	p.Glu2918Ter	p.E2918*	ENST00000380152		2918	Gag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29422376	29422376	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	27	243	0	ENST00000358273.4:c.49T>A	p.Phe17Ile	p.F17I	ENST00000358273	NM_001042492.2	17	Ttc/Atc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180039680	180040702	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTTCCTGGGCCCTCTCACCCACTCTGCCCTCCTCCTGACACGTCTCCCACTCTTGTCCAGCTACCCTCGTTCCTCCTTCAAGTGTTAGCCCAGCGTCCCCTCCTGGTGATGCTTTCCCTGAACACTCGGCTCTGTTCCGACAGCGCCCGGCCTTCCCTCCTGGTGTCCTCCTGGTGCAGCTGTGCTACAGACTACCCGTGTATCTTGAGGGTGGTGCCCAGGCCTGTCCTACTGGCCCTGGCTTCCCTGATGCCACCTTCTCATGGACACAACCCCCACGCCCCCGACGCTTGCTGTCCCCAAAACCTGCAGGGCCATGGGGAGGCTCACATGGCGGGAGTGGCCAGCTCCGGGGCCCTCATCCTTGTGCCGTCTCTCAGCCGCTGGCAGAACTCCTCATTGATCTGCACCCCAGGGTACGGGGAGGCCCCTGACAACAGGAAGGGGAGGTGGGTGGGGAGCAAGCCTCCTGCGGCTCAGCCCAGCCCCCCAAGTCACCCCATCCTGTCCCTTCCCCATCAAGTCACCCCGTCCTGTCCCTTTCCCCATCCGTGGTGGGGTGGAGATGGCTCACCCGACTGTGCTCTACCTGGGACCTGTGGGCAAGTCGCTGCCCTCCCCAGCTCTAGTTCATTTGGTTAAAAGAGGACTGTGCCGCCTGCTTGCTAGGGGTGCCAAGAGCATCCACCCACTGGCGACACGGTAGACATCATGGTTACTGGATCATCAGCGGCGGGGGAGCCGCCTGCAGGCAGTTTCAACAAAGCCTCTCTTGCTTCTCGCTGCTTCTCCTGCTGCTCCCCCCAACCCCTGCTGCTCCCCCCAACCCCTGCTGCTCCTCCCAACCCCTGCTGCTCCCCGTCCTGGACTGCTGAACTCCCTCCTTGGGCCCCTCTGGCTTACCCGAGCTCCCACGCCTCCTACACTCTTCCTGCTCCTTTAGTTTCCGCAGTAGCGTGGATCAGTTGCCACTTGGTGACATTTTAACTTTTTCAAGTTCACTGCCCTACCCTGGCCTGGAG	CCTTCCTGGGCCCTCTCACCCACTCTGCCCTCCTCCTGACACGTCTCCCACTCTTGTCCAGCTACCCTCGTTCCTCCTTCAAGTGTTAGCCCAGCGTCCCCTCCTGGTGATGCTTTCCCTGAACACTCGGCTCTGTTCCGACAGCGCCCGGCCTTCCCTCCTGGTGTCCTCCTGGTGCAGCTGTGCTACAGACTACCCGTGTATCTTGAGGGTGGTGCCCAGGCCTGTCCTACTGGCCCTGGCTTCCCTGATGCCACCTTCTCATGGACACAACCCCCACGCCCCCGACGCTTGCTGTCCCCAAAACCTGCAGGGCCATGGGGAGGCTCACATGGCGGGAGTGGCCAGCTCCGGGGCCCTCATCCTTGTGCCGTCTCTCAGCCGCTGGCAGAACTCCTCATTGATCTGCACCCCAGGGTACGGGGAGGCCCCTGACAACAGGAAGGGGAGGTGGGTGGGGAGCAAGCCTCCTGCGGCTCAGCCCAGCCCCCCAAGTCACCCCATCCTGTCCCTTCCCCATCAAGTCACCCCGTCCTGTCCCTTTCCCCATCCGTGGTGGGGTGGAGATGGCTCACCCGACTGTGCTCTACCTGGGACCTGTGGGCAAGTCGCTGCCCTCCCCAGCTCTAGTTCATTTGGTTAAAAGAGGACTGTGCCGCCTGCTTGCTAGGGGTGCCAAGAGCATCCACCCACTGGCGACACGGTAGACATCATGGTTACTGGATCATCAGCGGCGGGGGAGCCGCCTGCAGGCAGTTTCAACAAAGCCTCTCTTGCTTCTCGCTGCTTCTCCTGCTGCTCCCCCCAACCCCTGCTGCTCCCCCCAACCCCTGCTGCTCCTCCCAACCCCTGCTGCTCCCCGTCCTGGACTGCTGAACTCCCTCCTTGGGCCCCTCTGGCTTACCCGAGCTCCCACGCCTCCTACACTCTTCCTGCTCCTTTAGTTTCCGCAGTAGCGTGGATCAGTTGCCACTTGGTGACATTTTAACTTTTTCAAGTTCACTGCCCTACCCTGGCCTGGAG	-			P-0072550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	22	147	0	ENST00000261937.6:c.3331+368_3432-67del		p.X1111_splice	ENST00000261937	NM_182925.4	1111																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32185876	32185876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	52	289	0	ENST00000375023.3:c.1520G>A	p.Gly507Glu	p.G507E	ENST00000375023	NM_004557.3	507	gGg/gAg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0072551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	244	350	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	34	386	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																															
BARD1	580	MSKCC	GRCh37	2	215593573	215593573	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs554708247		P-0072551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	360	437	0	ENST00000260947.4:c.2161G>A	p.Ala721Thr	p.A721T	ENST00000260947	NM_000465.2	721	Gca/Aca																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0072551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	567	521	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0072551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	47	244	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492745	56492745	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	91	403	0	ENST00000407977.2:c.194T>C	p.Leu65Ser	p.L65S	ENST00000407977		65	tTg/tCg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435703	56435704	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0072551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	307	470	0	ENST00000407977.2:c.1433_1434del	p.Ser478CysfsTer26	p.S478Cfs*26	ENST00000407977		478	tCT/t																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152861490	152861494	+	frameshift_variant	Frame_Shift_Del	DEL	TCCGC	TCCGC	ACCG			P-0072551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			44	344	192	0	ENST00000406277.2:c.258_262delinsCGGT	p.Arg87GlyfsTer41	p.R87Gfs*41	ENST00000406277	NM_152274.4	86	ctGCGGAct/ctCGGTct																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0072567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	108	372	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0072567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	106	322	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163711	32163712	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0072567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	57	346	0	ENST00000375023.3:c.5514dup	p.Pro1839AlafsTer77	p.P1839Afs*77	ENST00000375023	NM_004557.3	1838	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	634	471	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974678	21974678	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G	rs587778189		P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	121	453	0	ENST00000304494.5:c.149A>C	p.Gln50Pro	p.Q50P	ENST00000304494	NM_000077.4	50	cAg/cCg																																																																															
FH	2271	MSKCC	GRCh37	1	241671938	241671938	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	54	265	0	ENST00000366560.3:c.703C>G	p.His235Asp	p.H235D	ENST00000366560	NM_000143.3	235	Cat/Gat																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61306483	61306483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	85	312	0	ENST00000341074.5:c.704C>A	p.Pro235Gln	p.P235Q	ENST00000341074	NM_002974.2	235	cCa/cAa																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794359	242794359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	99	381	0	ENST00000334409.5:c.583G>T	p.Ala195Ser	p.A195S	ENST00000334409	NM_005018.2	195	Gcc/Tcc																																																																															
ATRX	546	MSKCC	GRCh37	X	76937463	76937463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	85	107	0	ENST00000373344.5:c.3285G>T	p.Lys1095Asn	p.K1095N	ENST00000373344	NM_000489.3	1095	aaG/aaT																																																																															
TSC2	7249	MSKCC	GRCh37	16	2105442	2105442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	116	345	0	ENST00000219476.3:c.521C>T	p.Ser174Leu	p.S174L	ENST00000219476	NM_000548.3	174	tCg/tTg																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20150345	20150345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	82	110	0	ENST00000379607.5:c.292G>T	p.Asp98Tyr	p.D98Y	ENST00000379607	NM_001412.3	98	Gac/Tac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251773	212251773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	128	365	0	ENST00000342788.4:c.3286G>T	p.Gly1096Cys	p.G1096C	ENST00000342788	NM_005235.2	1096	Ggt/Tgt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562885	95562885	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	116	349	0	ENST00000343455.3:c.4372A>G	p.Met1458Val	p.M1458V	ENST00000343455	NM_177438.2	1458	Atg/Gtg																																																																															
AR	367	MSKCC	GRCh37	X	66766495	66766495	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	116	239	0	ENST00000374690.3:c.1507T>A	p.Trp503Arg	p.W503R	ENST00000374690	NM_000044.3	503	Tgg/Agg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1906009	1906010	+	missense_variant	Missense_Mutation	DNP	GT	GT	CA			P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	174	330	0	ENST00000382895.3:c.664_665delinsCA	p.Val222His	p.V222H	ENST00000382895	NM_133330.2	222	GTt/CAt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636805	8636805	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	190	340	0	ENST00000356435.5:c.104G>T	p.Gly35Val	p.G35V	ENST00000356435		35	gGg/gTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81399202	81399202	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	117	365	0	ENST00000222390.5:c.86C>T	p.Ala29Val	p.A29V	ENST00000222390	NM_000601.4	29	gCa/gTa																																																																															
MPL	4352	MSKCC	GRCh37	1	43806076	43806076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	106	380	0	ENST00000372470.3:c.872G>A	p.Cys291Tyr	p.C291Y	ENST00000372470	NM_005373.2	291	tGc/tAc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89457242	89457242	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	113	230	0	ENST00000336596.2:c.1723G>T	p.Gly575Trp	p.G575W	ENST00000336596	NM_005233.5	575	Ggg/Tgg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876573	35876574	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	93	382	0	ENST00000303115.3:c.1365_1366delinsAA	p.Phe455_Tyr456delinsLeuAsn	p.F455_Y456delinsLN	ENST00000303115	NM_002185.3	455	ttCTac/ttAAac																																																																															
MST1R	4486	MSKCC	GRCh37	3	49927985	49927985	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	191	398	0	ENST00000296474.3:c.3743G>T	p.Arg1248Leu	p.R1248L	ENST00000296474	NM_002447.2	1248	cGc/cTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29509567	29509567	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	113	294	0	ENST00000358273.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000358273	NM_001042492.2	258	Gaa/Taa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857577	9857577	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	121	480	0	ENST00000330684.3:c.3824A>G	p.Asn1275Ser	p.N1275S	ENST00000330684	NM_001134407.1	1275	aAt/aGt																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981875	101981875	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	185	382	0	ENST00000282441.5:c.296C>G	p.Pro99Arg	p.P99R	ENST00000282441	NM_001130145.2	99	cCg/cGg																																																																															
ALK	238	MSKCC	GRCh37	2	29416541	29416541	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	184	514	0	ENST00000389048.3:c.4412T>C	p.Val1471Ala	p.V1471A	ENST00000389048	NM_004304.4	1471	gTg/gCg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430501	181430501	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	121	410	0	ENST00000325404.1:c.353C>A	p.Thr118Lys	p.T118K	ENST00000325404	NM_003106.3	118	aCg/aAg																																																																															
MITF	4286	MSKCC	GRCh37	3	69988277	69988277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	190	274	0	ENST00000352241.4:c.611G>T	p.Arg204Met	p.R204M	ENST00000352241	NM_198159.2	204	aGg/aTg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066795	30066795	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	83	354	0	ENST00000331968.5:c.2336G>C	p.Gly779Ala	p.G779A	ENST00000331968	NM_002742.2	779	gGc/gCc																																																																															
MGA	23269	MSKCC	GRCh37	15	42042058	42042058	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	169	329	0	ENST00000219905.7:c.6253G>T	p.Glu2085Ter	p.E2085*	ENST00000219905	NM_001164273.1	2085	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0072648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	62	298	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0072677-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			375	25	395	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0072677-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			291	22	332	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0072677-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	41	368	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023270	27023270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072677-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			413	23	325	0	ENST00000324856.7:c.376G>A	p.Gly126Ser	p.G126S	ENST00000324856	NM_006015.4	126	Ggc/Agc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982973	201982973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072677-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			446	58	382	0	ENST00000359651.3:c.822C>G	p.His274Gln	p.H274Q	ENST00000359651		274	caC/caG																																																																															
EZH1	2145	MSKCC	GRCh37	17	40856686	40856686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072677-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			251	38	244	0	ENST00000428826.2:c.1951G>A	p.Glu651Lys	p.E651K	ENST00000428826		651	Gag/Aag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021260	31021260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072677-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			426	36	417	0	ENST00000375687.4:c.1259C>T	p.Ala420Val	p.A420V	ENST00000375687	NM_015338.5	420	gCc/gTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178659	56178659	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072677-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			317	28	331	0	ENST00000399503.3:c.3632A>G	p.Glu1211Gly	p.E1211G	ENST00000399503	NM_005921.1	1211	gAa/gGa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0072139-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	165	511	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
MED12	9968	MSKCC	GRCh37	X	70361104	70361104	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072139-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	214	776	0	ENST00000374080.3:c.6292C>T	p.Gln2098Ter	p.Q2098*	ENST00000374080		2098	Cag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32969041	32969041	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072139-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	88	278	0	ENST00000380152.3:c.9472A>G	p.Thr3158Ala	p.T3158A	ENST00000380152		3158	Aca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0072422-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	291	436	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81574756	81574756	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072422-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			226	337	364	0	ENST00000298171.2:c.652A>G	p.Lys218Glu	p.K218E	ENST00000298171	NM_000369.2	218	Aaa/Gaa																																																																															
TP63	8626	MSKCC	GRCh37	3	189586491	189586491	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072422-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			433	273	385	0	ENST00000264731.3:c.1115A>G	p.Asp372Gly	p.D372G	ENST00000264731	NM_003722.4	372	gAt/gGt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1936939	1936939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	247	416	0	ENST00000382895.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000382895	NM_133330.2	542	Gag/Aag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984838	11984848	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	GGCAGTTAAAG	GGCAGTTAAAG	T			P-0072572-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	166	283	0	ENST00000353533.5:c.384_393+1delinsT		p.X128_splice	ENST00000353533	NM_003010.3	128																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0072617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	302	525	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0072617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			102	75	199	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692790	89692790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			130	14	243	0	ENST00000371953.3:c.274G>A	p.Asp92Asn	p.D92N	ENST00000371953	NM_000314.4	92	Gac/Aac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2958127	2958127	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs769192567		P-0072617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			248	14	433	0	ENST00000396946.4:c.2605C>T	p.Arg869Trp	p.R869W	ENST00000396946	NM_032415.4	869	Cgg/Tgg																																																																															
ATRX	546	MSKCC	GRCh37	X	76952119	76952119	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			206	32	274	0	ENST00000373344.5:c.316G>C	p.Asp106His	p.D106H	ENST00000373344	NM_000489.3	106	Gat/Cat																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109945	115109945	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			471	46	471	0	ENST00000257566.3:c.1933A>G	p.Ile645Val	p.I645V	ENST00000257566	NM_016569.3	645	Atc/Gtc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797242	135797242	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072617-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			88	172	403	0	ENST00000298552.3:c.627G>C	p.Met209Ile	p.M209I	ENST00000298552	NM_001162426.1	209	atG/atC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0072626-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	94	482	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072626-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	95	413	0	ENST00000331920.6:c.3921del	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
POLE	5426	MSKCC	GRCh37	12	133245398	133245398	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0072626-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	115	430	0	ENST00000320574.5:c.1922A>G	p.Gln641Arg	p.Q641R	ENST00000320574	NM_006231.2	641	cAg/cGg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201789	66201789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072626-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	71	354	0	ENST00000273854.3:c.2713G>A	p.Ala905Thr	p.A905T	ENST00000273854	NM_004439.5	905	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs786201838		P-0072705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	25	577	0	ENST00000269305.4:c.578A>C	p.His193Pro	p.H193P	ENST00000269305	NM_001126112.2	193	cAt/cCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0072711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	97	356	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0072711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	55	124	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0072711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	89	271	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214738	36214738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	47	427	0	ENST00000222270.7:c.3164G>A	p.Arg1055Gln	p.R1055Q	ENST00000222270	NM_014727.1	1055	cGg/cAg																																																																															
AKT2	208	MSKCC	GRCh37	19	40747846	40747846	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0072711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	40	445	0	ENST00000392038.2:c.572del	p.Lys191ArgfsTer25	p.K191Rfs*25	ENST00000392038	NM_001626.4	191	aAg/ag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468088	120468088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			966	159	627	0	ENST00000256646.2:c.4351G>A	p.Asp1451Asn	p.D1451N	ENST00000256646	NM_024408.3	1451	Gat/Aat																																																																															
FLT1	2321	MSKCC	GRCh37	13	28882990	28882990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	32	453	0	ENST00000282397.4:c.3710C>T	p.Ser1237Phe	p.S1237F	ENST00000282397	NM_002019.4	1237	tCc/tTc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30133206	30133206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	113	578	0	ENST00000263025.4:c.292G>A	p.Glu98Lys	p.E98K	ENST00000263025	NM_002746.2	98	Gag/Aag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880180	37880180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	205	518	0	ENST00000269571.5:c.2224G>A	p.Asp742Asn	p.D742N	ENST00000269571		742	Gat/Aat																																																																															
EZH1	2145	MSKCC	GRCh37	17	40860003	40860003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	232	495	0	ENST00000428826.2:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000428826		545	Gag/Aag																																																																															
TET2	54790	MSKCC	GRCh37	4	106196936	106196936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	215	531	0	ENST00000380013.4:c.5269C>T	p.His1757Tyr	p.H1757Y	ENST00000380013	NM_001127208.2	1757	Cat/Tat																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258602	16258603	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	257	661	0	ENST00000375759.3:c.5868dup	p.Arg1957ThrfsTer6	p.R1957Tfs*6	ENST00000375759	NM_015001.2	1956	aca/acAa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65344716	65344716	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0072714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	226	477	0	ENST00000342505.4:c.321C>G	p.Tyr107Ter	p.Y107*	ENST00000342505	NM_002227.2	107	taC/taG																																																																															
RB1	5925	MSKCC	GRCh37	13	48939105	48939105	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0072714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	63	197	0	ENST00000267163.4:c.937G>A	p.Glu313Lys	p.E313K	ENST00000267163	NM_000321.2	313	Gag/Aag																																																																															
USP8	9101	MSKCC	GRCh37	15	50731355	50731355	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	27	273	0	ENST00000307179.4:c.85G>C	p.Glu29Gln	p.E29Q	ENST00000307179		29	Gag/Cag																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45371772	45371772	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0072714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	253	545	0	ENST00000262160.6:c.1219C>T	p.Gln407Ter	p.Q407*	ENST00000262160	NM_005901.5	407	Cag/Tag																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027380	48027380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	204	488	0	ENST00000234420.5:c.2258C>T	p.Ser753Phe	p.S753F	ENST00000234420	NM_000179.2	753	tCt/tTt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517973	176517973	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	233	636	0	ENST00000292408.4:c.471G>C	p.Lys157Asn	p.K157N	ENST00000292408	NM_213647.1	157	aaG/aaC																																																																															
RAD21	5885	MSKCC	GRCh37	8	117866616	117866616	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0072714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	248	492	0	ENST00000297338.2:c.1029T>A	p.Asp343Glu	p.D343E	ENST00000297338	NM_006265.2	343	gaT/gaA																																																																															
STK11	6794	MSKCC	GRCh37	19	1221320	1221320	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587776656		P-0072652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	78	352	0	ENST00000326873.7:c.843del	p.Leu282SerfsTer5	p.L282Sfs*5	ENST00000326873	NM_000455.4	281	ccG/cc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033191	69033191	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	911	205	0	ENST00000288368.4:c.3631C>A	p.Pro1211Thr	p.P1211T	ENST00000288368	NM_024870.2	1211	Cca/Aca																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25991725	25991726	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	AT			P-0072652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	42	214	0	ENST00000435504.4:c.516_517delinsAT	p.Gln173Ter	p.Q173*	ENST00000435504		172	caGCaa/caATaa																																																																															
ARAF	369	MSKCC	GRCh37	X	47422689	47422689	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	49	294	0	ENST00000377045.4:c.161T>G	p.Leu54Arg	p.L54R	ENST00000377045	NM_001654.4	54	cTa/cGa																																																																															
ATRX	546	MSKCC	GRCh37	X	76949410	76949410	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	21	185	0	ENST00000373344.5:c.387G>T	p.Gln129His	p.Q129H	ENST00000373344	NM_000489.3	129	caG/caT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992505	72992505	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	68	290	0	ENST00000268489.5:c.1540G>T	p.Ala514Ser	p.A514S	ENST00000268489	NM_006885.3	514	Gca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0072902-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	57	362	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42003228	42003228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072902-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	69	375	0	ENST00000219905.7:c.2765C>T	p.Pro922Leu	p.P922L	ENST00000219905	NM_001164273.1	922	cCt/cTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29657430	29657431	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0072902-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	23	286	0	ENST00000358273.4:c.5729_5730del	p.Ser1910TyrfsTer2	p.S1910Yfs*2	ENST00000358273	NM_001042492.2	1909	gTC/g																																																																															
NF1	4763	MSKCC	GRCh37	17	29685510	29685510	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072902-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	34	219	0	ENST00000358273.4:c.7984del	p.Asp2662ThrfsTer17	p.D2662Tfs*17	ENST00000358273	NM_001042492.2	2661	ttG/tt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919077	178919078	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0072902-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	25	198	0	ENST00000263967.3:c.563-1_563delinsTT		p.X188_splice	ENST00000263967	NM_006218.2	188																																																																																
CARD11	84433	MSKCC	GRCh37	7	2974124	2974124	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072902-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	56	354	0	ENST00000396946.4:c.1481A>G	p.His494Arg	p.H494R	ENST00000396946	NM_032415.4	494	cAt/cGt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508853	106508853	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072902-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	44	465	0	ENST00000359195.3:c.847G>T	p.Gly283Cys	p.G283C	ENST00000359195	NM_002649.2	283	Ggc/Tgc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275132	41275132	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055211-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	164	278	0	ENST00000349496.5:c.1298A>G	p.Lys433Arg	p.K433R	ENST00000349496	NM_001904.3	433	aAg/aGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0072073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	50	355	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
JAK3	3718	MSKCC	GRCh37	19	17953235	17953235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	33	365	0	ENST00000458235.1:c.751G>A	p.Ala251Thr	p.A251T	ENST00000458235	NM_000215.3	251	Gcc/Acc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128047035	128047035	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs980899348		P-0072651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	28	309	0	ENST00000285398.2:c.700C>T	p.Arg234Ter	p.R234*	ENST00000285398	NM_000122.1	234	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0066338-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			399	10	264	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071318-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			226	284	531	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710585	114710585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071318-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			496	106	493	0	ENST00000543371.1:c.70G>A	p.Glu24Lys	p.E24K	ENST00000543371	NM_001198531.1	24	Gag/Aag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992980	68992980	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C	rs1181417548		P-0071318-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			116	45	200	0	ENST00000288368.4:c.1786-1G>C		p.X596_splice	ENST00000288368	NM_024870.2	596																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5218520	5218520	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs936142250		P-0071318-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			304	62	478	0	ENST00000357368.4:c.3959G>A	p.Arg1320His	p.R1320H	ENST00000357368	NM_002850.3	1320	cGc/cAc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814708	139814708	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071318-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			300	103	508	0	ENST00000247668.2:c.701A>T	p.Glu234Val	p.E234V	ENST00000247668	NM_021138.3	234	gAg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578470	7578517	+	inframe_deletion	In_Frame_Del	DEL	CGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGG	CGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGG	-			P-0071318-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			214	286	516	0	ENST00000269305.4:c.413_460del	p.Ala138_Pro153del	p.A138_P153del	ENST00000269305	NM_001126112.2	138	gCCAAGACCTGCCCTGTGCAGCTGTGGGTTGATTCCACACCCCCGCCCGgc/ggc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372450	55372450	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071318-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			251	102	564	0	ENST00000297316.4:c.1140G>C	p.Gln380His	p.Q380H	ENST00000297316	NM_022454.3	380	caG/caC																																																																															
NF1	4763	MSKCC	GRCh37	17	29667651	29667652	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTCT			P-0071318-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			113	115	298	0	ENST00000358273.4:c.7053_7054insTTTC	p.Asn2352PhefsTer3	p.N2352Ffs*3	ENST00000358273	NM_001042492.2	2350	-/TTCT																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672342	86672342	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071318-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			103	83	369	0	ENST00000274376.6:c.2144A>G	p.Glu715Gly	p.E715G	ENST00000274376	NM_002890.2	715	gAa/gGa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295335	1295335	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0071318-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			298	137	615	0				ENST00000310581	NM_198253.2																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0071902-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			128	50	145	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
AXL	558	MSKCC	GRCh37	19	41763474	41763474	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071902-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			317	104	302	0	ENST00000301178.4:c.2273T>C	p.Ile758Thr	p.I758T	ENST00000301178	NM_021913.4	758	aTt/aCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0071935-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	18	498	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071935-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	22	346	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48951107	48951110	+	frameshift_variant	Frame_Shift_Del	DEL	ATAC	ATAC	-			P-0071935-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	22	277	0	ENST00000267163.4:c.1271_1274del	p.Tyr424SerfsTer32	p.Y424Sfs*32	ENST00000267163	NM_000321.2	423	ggATAC/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0072072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	158	171	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP63	8626	MSKCC	GRCh37	3	189586470	189586470	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147148566		P-0072072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	114	272	1	ENST00000264731.3:c.1094C>T	p.Ser365Leu	p.S365L	ENST00000264731	NM_003722.4	365	tCg/tTg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781915	9781915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	146	222	0	ENST00000377346.4:c.2052G>T	p.Lys684Asn	p.K684N	ENST00000377346	NM_005026.3	684	aaG/aaT																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713707	30713707	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0072072-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	239	327	0	ENST00000359013.4:c.1107G>A	p.Trp369Ter	p.W369*	ENST00000359013	NM_001024847.2	369	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0072481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	43	449	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39278352	39278352	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs137852812		P-0072481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	35	292	0	ENST00000402219.2:c.797C>A	p.Thr266Lys	p.T266K	ENST00000402219	NM_005633.3	266	aCa/aAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105946	27105946	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	45	437	0	ENST00000324856.7:c.5557G>T	p.Glu1853Ter	p.E1853*	ENST00000324856	NM_006015.4	1853	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0072481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	48	254	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0072492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	49	344	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581262	48581262	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	18	410	0	ENST00000342988.3:c.566G>T	p.Arg189Leu	p.R189L	ENST00000342988	NM_005359.5	189	cGt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1131691025		P-0072496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	167	402	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29557315	29557315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	120	270	0	ENST00000358273.4:c.3028C>T	p.Gln1010Ter	p.Q1010*	ENST00000358273	NM_001042492.2	1010	Caa/Taa																																																																															
MET	4233	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	T			P-0072496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	151	457	0	ENST00000397752.3:c.3028+3A>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8341806	8341806	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs895259059		P-0072496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	54	443	0	ENST00000356435.5:c.4834G>T	p.Ala1612Ser	p.A1612S	ENST00000356435		1612	Gca/Tca																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987007	36987007	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	44	345	0	ENST00000354822.5:c.682A>G	p.Ile228Val	p.I228V	ENST00000354822	NM_001079668.2	228	Atc/Gtc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2213860	2213860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	138	429	0	ENST00000398665.3:c.1672G>T	p.Ala558Ser	p.A558S	ENST00000398665	NM_032482.2	558	Gcg/Tcg																																																																															
ALK	238	MSKCC	GRCh37	2	29917875	29917875	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs543234312		P-0072496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	106	387	0	ENST00000389048.3:c.793G>T	p.Glu265Ter	p.E265*	ENST00000389048	NM_004304.4	265	Gag/Tag																																																																															
TEK	7010	MSKCC	GRCh37	9	27157978	27157978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	67	508	0	ENST00000380036.4:c.202C>T	p.His68Tyr	p.H68Y	ENST00000380036	NM_000459.3	68	Cac/Tac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0072500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	70	200	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0072500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	69	182	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652129	36652129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34916193		P-0072500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	45	450	1	ENST00000244741.5:c.251G>A	p.Arg84Gln	p.R84Q	ENST00000244741	NM_000389.4	84	cGa/cAa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251207	99251207	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	38	410	0	ENST00000268035.6:c.511G>C	p.Gly171Arg	p.G171R	ENST00000268035	NM_000875.3	171	Ggg/Cgg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661099	227661099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	184	475	0	ENST00000305123.5:c.2356C>T	p.His786Tyr	p.H786Y	ENST00000305123	NM_005544.2	786	Cat/Tat																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467056	25467058	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0072500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	179	439	0	ENST00000264709.3:c.1817_1819del	p.Gln606_Met607delinsLeu	p.Q606_M607delinsL	ENST00000264709	NM_175629.2	606	cAGAtg/ctg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778065	3778065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			747	194	427	0	ENST00000262367.5:c.6983C>T	p.Ser2328Leu	p.S2328L	ENST00000262367	NM_004380.2	2328	tCg/tTg																																																																															
FANCC	2176	MSKCC	GRCh37	9	98011555	98011555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	196	375	0	ENST00000289081.3:c.19G>A	p.Asp7Asn	p.D7N	ENST00000289081	NM_000136.2	7	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0072520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	24	701	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag																																																																															
PAK1	5058	MSKCC	GRCh37	11	77069954	77069954	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	28	621	0	ENST00000356341.3:c.586C>A	p.His196Asn	p.H196N	ENST00000356341	NM_002576.4	196	Cac/Aac																																																																															
EP300	2033	MSKCC	GRCh37	22	41574811	41574811	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0072520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	25	652	0	ENST00000263253.7:c.7096A>T	p.Ser2366Cys	p.S2366C	ENST00000263253	NM_001429.3	2366	Agc/Tgc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936623	49936623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	28	715	0	ENST00000296474.3:c.1304G>T	p.Arg435Leu	p.R435L	ENST00000296474	NM_002447.2	435	cGt/cTt																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24133968	24133968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	23	558	0	ENST00000263121.7:c.119G>T	p.Arg40Leu	p.R40L	ENST00000263121	NM_003073.3	40	cGa/cTa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981186	201981187	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0072522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	128	428	0	ENST00000359651.3:c.267dup	p.Ile90HisfsTer2	p.I90Hfs*2	ENST00000359651		89	gcc/gCcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0072522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	324	452	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112174835	112174835	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0072522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	98	402	0	ENST00000257430.4:c.3544A>T	p.Lys1182Ter	p.K1182*	ENST00000257430	NM_000038.5	1182	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0072540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	66	321	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0072540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	48	199	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423403	47423403	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	71	269	0	ENST00000404338.3:c.1471G>C	p.Glu491Gln	p.E491Q	ENST00000404338	NM_004491.4	491	Gaa/Caa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0072542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	91	235	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MDM2	4193	MSKCC	GRCh37	12	69229730	69229730	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	95	267	0	ENST00000462284.1:c.806A>G	p.Glu269Gly	p.E269G	ENST00000462284	NM_002392.5	269	gAa/gGa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355368	15355368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	66	320	0	ENST00000263377.2:c.2255C>T	p.Pro752Leu	p.P752L	ENST00000263377	NM_058243.2	752	cCt/cTt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061194	38061205	+	inframe_deletion	In_Frame_Del	DEL	GCGCTTCTGGCG	GCGCTTCTGGCG	-			P-0072589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	506	385	0	ENST00000250448.2:c.784_795del	p.Arg262_Arg265del	p.R262_R265del	ENST00000250448	NM_004496.3	262	CGCCAGAAGCGC/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0072589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	368	437	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913500		P-0072589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	259	385	0	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266107	41266107	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	439	397	0	ENST00000349496.5:c.104T>G	p.Ile35Ser	p.I35S	ENST00000349496	NM_001904.3	35	aTc/aGc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1962817	1962817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	355	406	2	ENST00000382895.3:c.3311C>T	p.Ala1104Val	p.A1104V	ENST00000382895	NM_133330.2	1104	gCg/gTg																																																																															
KIT	3815	MSKCC	GRCh37	4	55594061	55594061	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs891140054		P-0072589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	242	319	0	ENST00000288135.5:c.1847C>T	p.Ala616Val	p.A616V	ENST00000288135	NM_000222.2	616	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0072591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	55	299	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48881474	48881474	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	102	347	0	ENST00000267163.4:c.196del	p.Ile66TyrfsTer11	p.I66Yfs*11	ENST00000267163	NM_000321.2	66	Ata/ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7574007	7574008	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATCT			P-0072591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	81	420	0	ENST00000269305.4:c.1016_1019dup	p.Met340IlefsTer8	p.M340Ifs*8	ENST00000269305	NM_001126112.2	340	atg/atAGATg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220595	1220601	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCGG	GCGGCGG	-			P-0072591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	64	535	0	ENST00000326873.7:c.613_619del	p.Ala205ThrfsTer80	p.A205Tfs*80	ENST00000326873	NM_000455.4	205	GCGGCGGac/ac																																																																															
RXRA	6256	MSKCC	GRCh37	9	137293626	137293626	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	76	592	1	ENST00000481739.1:c.177C>A	p.Asn59Lys	p.N59K	ENST00000481739	NM_002957.4	59	aaC/aaA																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs121913468		P-0072597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	176	378	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0072597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	254	512	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
BTK	695	MSKCC	GRCh37	X	100613409	100613409	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	42	403	0	ENST00000308731.7:c.991A>G	p.Ile331Val	p.I331V	ENST00000308731	NM_000061.2	331	Ata/Gta																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0072598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	24	304	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0072598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	33	304	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	418	449	0	ENST00000269305.4:c.542G>C	p.Arg181Pro	p.R181P	ENST00000269305	NM_001126112.2	181	cGc/cCc																																																																															
APC	324	MSKCC	GRCh37	5	112173789	112173789	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	209	339	0	ENST00000257430.4:c.2498G>T	p.Ser833Ile	p.S833I	ENST00000257430	NM_000038.5	833	aGc/aTc																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858393	27858393	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			745	55	506	0	ENST00000359303.2:c.178G>C	p.Glu60Gln	p.E60Q	ENST00000359303	NM_003535.2	60	Gag/Cag																																																																															
PAK1	5058	MSKCC	GRCh37	11	77090968	77090968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	257	327	0	ENST00000356341.3:c.262G>T	p.Gly88Cys	p.G88C	ENST00000356341	NM_002576.4	88	Ggt/Tgt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86665703	86665703	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	144	224	0	ENST00000274376.6:c.1684C>G	p.Pro562Ala	p.P562A	ENST00000274376	NM_002890.2	562	Cca/Gca																																																																															
FLT3	2322	MSKCC	GRCh37	13	28592662	28592662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	245	357	0	ENST00000241453.7:c.2483G>A	p.Cys828Tyr	p.C828Y	ENST00000241453	NM_004119.2	828	tGt/tAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733253	40733254	+	missense_variant	Missense_Mutation	DNP	GC	GC	TA			P-0072598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	183	420	0	ENST00000373198.4:c.3552_3553delinsTA	p.Arg1184_Leu1185delinsSerMet	p.R1184_L1185delinsSM	ENST00000373198	NM_133170.3	1184	agGCtg/agTAtg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221096	5221096	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	249	392	1	ENST00000357368.4:c.3370G>T	p.Gly1124Cys	p.G1124C	ENST00000357368	NM_002850.3	1124	Ggc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524714	187524714	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	270	341	0	ENST00000441802.2:c.10966G>T	p.Val3656Phe	p.V3656F	ENST00000441802	NM_005245.3	3656	Gtt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0072345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	162	680	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs786201838		P-0072345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	97	586	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0072345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	143	127	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149452875	149452875	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	42	490	0	ENST00000286301.3:c.1071G>T	p.Lys357Asn	p.K357N	ENST00000286301	NM_005211.3	357	aaG/aaT																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060650	38060650	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			938	259	743	0	ENST00000250448.2:c.1339A>T	p.Arg447Trp	p.R447W	ENST00000250448	NM_004496.3	447	Agg/Tgg																																																																															
LATS1	9113	MSKCC	GRCh37	6	149982885	149982885	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	68	73	0	ENST00000253339.5:c.3373del	p.Arg1125AlafsTer3	p.R1125Afs*3	ENST00000253339		1125	Cgc/gc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93955031	93955031	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	55	44	0	ENST00000369303.4:c.2867C>A	p.Ala956Asp	p.A956D	ENST00000369303	NM_004440.3	956	gCc/gAc																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230459366	230459366	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0072345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	134	462	0	ENST00000525115.1:c.1173G>C	p.Lys391Asn	p.K391N	ENST00000525115		391	aaG/aaC																																																																															
CARD11	84433	MSKCC	GRCh37	7	2958153	2958153	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	158	479	0	ENST00000396946.4:c.2579G>T	p.Gly860Val	p.G860V	ENST00000396946	NM_032415.4	860	gGc/gTc																																																																															
ALK	238	MSKCC	GRCh37	2	30143462	30143462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	51	483	0	ENST00000389048.3:c.64G>T	p.Gly22Trp	p.G22W	ENST00000389048	NM_004304.4	22	Ggg/Tgg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609294	81609294	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	142	236	0	ENST00000298171.2:c.892T>G	p.Ser298Ala	p.S298A	ENST00000298171	NM_000369.2	298	Tcc/Gcc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222530	2222530	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760394488		P-0072346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	173	502	0	ENST00000398665.3:c.3362C>T	p.Ser1121Leu	p.S1121L	ENST00000398665	NM_032482.2	1121	tCg/tTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134898764	134898764	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs185655852		P-0072346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	215	427	0	ENST00000398015.3:c.1822C>T	p.Arg608Trp	p.R608W	ENST00000398015	NM_004441.4	608	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108155111	108155111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	69	342	0	ENST00000278616.4:c.3904G>T	p.Gly1302Cys	p.G1302C	ENST00000278616	NM_000051.3	1302	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577027	7577028	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTTACCTTGCTTACCTTGCTTACCT			P-0072346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	172	579	0	ENST00000269305.4:c.910_911insAGGTAAGCAAGGTAAGCAAGGTAAG	p.Thr304LysfsTer10	p.T304Kfs*10	ENST00000269305	NM_001126112.2	304	act/aAGGTAAGCAAGGTAAGCAAGGTAAGct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0069311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	15	338	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
RB1	5925	MSKCC	GRCh37	13	48951167	48951167	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070307-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			39	44	217	0	ENST00000267163.4:c.1329del	p.Gln444SerfsTer13	p.Q444Sfs*13	ENST00000267163	NM_000321.2	443	tcA/tc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816577	32816577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070307-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			242	140	513	0	ENST00000354258.4:c.1598G>A	p.Gly533Asp	p.G533D	ENST00000354258	NM_000593.5	533	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0070794-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			346	333	608	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411927	63411927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070794-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			610	91	645	0	ENST00000330258.3:c.1240C>A	p.Gln414Lys	p.Q414K	ENST00000330258	NM_152424.3	414	Caa/Aaa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932255	39932255	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1452619451		P-0070794-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			546	98	539	0	ENST00000378444.4:c.2344G>A	p.Asp782Asn	p.D782N	ENST00000378444	NM_001123385.1	782	Gac/Aac																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681507	117681507	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0070794-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			238	71	327	0	ENST00000368508.3:c.3443C>T	p.Ser1148Leu	p.S1148L	ENST00000368508	NM_002944.2	1148	tCa/tTa																																																																															
MAX	4149	MSKCC	GRCh37	14	65560431	65560431	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070794-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			194	242	357	0	ENST00000358664.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000358664	NM_002382.4	56	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0070794-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			149	166	318	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141561505	141561505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070794-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	183	511	0	ENST00000220592.5:c.1300G>A	p.Val434Ile	p.V434I	ENST00000220592	NM_012154.3	434	Gtc/Atc																																																																															
HGF	3082	MSKCC	GRCh37	7	81331897	81331897	+	stop_lost	Nonstop_Mutation	SNP	C	C	A			P-0070794-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			164	143	304	0	ENST00000222390.5:c.2187G>T	p.Ter729TyrextTer3	p.*729Yext*3	ENST00000222390	NM_000601.4	729	taG/taT																																																																															
MED12	9968	MSKCC	GRCh37	X	70361212	70361212	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070794-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			420	293	585	0	ENST00000374080.3:c.6400C>T	p.Gln2134Ter	p.Q2134*	ENST00000374080		2134	Cag/Tag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861883	57861883	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070794-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1464	95	570	0	ENST00000228682.2:c.1184A>C	p.Lys395Thr	p.K395T	ENST00000228682	NM_005269.2	395	aAa/aCa																																																																															
TET2	54790	MSKCC	GRCh37	4	106196751	106196751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070794-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			228	277	448	0	ENST00000380013.4:c.5084G>T	p.Gly1695Val	p.G1695V	ENST00000380013	NM_001127208.2	1695	gGt/gTt																																																																															
RAD52	5893	MSKCC	GRCh37	12	1023658	1023659	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs766104736		P-0070794-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			465	51	388	0	ENST00000358495.3:c.905dup	p.Thr303AsnfsTer24	p.T303Nfs*24	ENST00000358495	NM_134424.2	302	gta/gtTa																																																																															
MSH3	4437	MSKCC	GRCh37	5	80171664	80171664	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070794-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			241	174	318	0	ENST00000265081.6:c.3397A>G	p.Thr1133Ala	p.T1133A	ENST00000265081	NM_002439.4	1133	Act/Gct																																																																															
CASP8	841	MSKCC	GRCh37	2	202123022	202123022	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781595738		P-0071758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			67	35	583	0	ENST00000358485.4:c.68C>T	p.Pro23Leu	p.P23L	ENST00000358485	NM_001080125.1	23	cCc/cTc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799696	72799696	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			66	35	545	0	ENST00000325599.8:c.1473G>C	p.Leu491Phe	p.L491F	ENST00000325599	NM_018130.2	491	ttG/ttC																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517646	176517646	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	17	614	0	ENST00000292408.4:c.347T>A	p.Ile116Asn	p.I116N	ENST00000292408	NM_213647.1	116	aTt/aAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0072112-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			485	19	351	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579314	7579314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0072112-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			456	33	350	0	ENST00000269305.4:c.373A>G	p.Thr125Ala	p.T125A	ENST00000269305	NM_001126112.2	125	Acg/Gcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0072112-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	27	223	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986711	36986745	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCTGCGCCTGGTGCTGCGCCTGCTGCTGCGCGT	GGCCTGCGCCTGGTGCTGCGCCTGCTGCTGCGCGT	-			P-0072112-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			358	25	347	0	ENST00000354822.5:c.944_978del	p.His315ArgfsTer112	p.H315Rfs*112	ENST00000354822	NM_001079668.2	315	cACGCGCAGCAGCAGGCGCAGCACCAGGCGCAGGCC/c																																																																															
AR	367	MSKCC	GRCh37	X	66766189	66766189	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072112-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			300	18	179	0	ENST00000374690.3:c.1201G>C	p.Ala401Pro	p.A401P	ENST00000374690	NM_000044.3	401	Gct/Cct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0072119-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			77	38	119	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
CCND2	894	MSKCC	GRCh37	12	4383331	4383331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	125	525	0	ENST00000261254.3:c.125C>T	p.Ser42Phe	p.S42F	ENST00000261254	NM_001759.3	42	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0072325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	292	518	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021238	31021238	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1272820357		P-0072325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	55	513	0	ENST00000375687.4:c.1237C>T	p.Arg413Trp	p.R413W	ENST00000375687	NM_015338.5	413	Cgg/Tgg																																																																															
ATR	545	MSKCC	GRCh37	3	142176448	142176448	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0072325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	52	299	0	ENST00000350721.4:c.7653G>A	p.Met2551Ile	p.M2551I	ENST00000350721	NM_001184.3	2551	atG/atA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0072325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	111	170	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549410	187549410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	151	557	0	ENST00000441802.2:c.4708C>T	p.Arg1570Trp	p.R1570W	ENST00000441802	NM_005245.3	1570	Cgg/Tgg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243708851	243708851	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	45	216	0	ENST00000263826.5:c.1212C>G	p.Phe404Leu	p.F404L	ENST00000263826	NM_005465.4	404	ttC/ttG																																																																															
BIRC3	330	MSKCC	GRCh37	11	102199667	102199667	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	31	157	0	ENST00000263464.3:c.1072G>C	p.Glu358Gln	p.E358Q	ENST00000263464	NM_001165.4	358	Gag/Cag																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480121	50480121	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	128	332	0	ENST00000394963.4:c.355C>G	p.Arg119Gly	p.R119G	ENST00000394963	NM_003076.4	119	Cga/Gga																																																																															
RB1	5925	MSKCC	GRCh37	13	48936964	48936971	+	frameshift_variant	Frame_Shift_Del	DEL	ACCCATTA	ACCCATTA	-			P-0072325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	95	285	0	ENST00000267163.4:c.733_740del	p.Pro245TrpfsTer23	p.P245Wfs*23	ENST00000267163	NM_000321.2	244	atACCCATTAat/atat																																																																															
CDH1	999	MSKCC	GRCh37	16	68849430	68849430	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	258	412	0	ENST00000261769.5:c.1333G>T	p.Glu445Ter	p.E445*	ENST00000261769	NM_004360.3	445	Gag/Tag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89882954	89882954	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	32	437	0	ENST00000389301.3:c.70G>C	p.Glu24Gln	p.E24Q	ENST00000389301	NM_000135.2	24	Gag/Cag																																																																															
NF1	4763	MSKCC	GRCh37	17	29585405	29585405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	98	406	0	ENST00000358273.4:c.4217G>A	p.Gly1406Glu	p.G1406E	ENST00000358273	NM_001042492.2	1406	gGa/gAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29585505	29585505	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			78	32	155	0	ENST00000358273.4:c.4317G>C	p.Leu1439Phe	p.L1439F	ENST00000358273	NM_001042492.2	1439	ttG/ttC																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223287	36223287	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0072325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	174	650	0	ENST00000222270.7:c.5837C>A	p.Ser1946Ter	p.S1946*	ENST00000222270	NM_014727.1	1946	tCa/tAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189379	56189379	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	99	398	0	ENST00000399503.3:c.4411C>G	p.Pro1471Ala	p.P1471A	ENST00000399503	NM_005921.1	1471	Cca/Gca																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032138	26032138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1406	329	655	1	ENST00000244661.2:c.151G>C	p.Glu51Gln	p.E51Q	ENST00000244661	NM_003537.3	51	Gag/Cag																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056314	26056314	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1355795147		P-0072325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1047	306	473	0	ENST00000343677.2:c.343G>A	p.Glu115Lys	p.E115K	ENST00000343677	NM_005319.3	115	Gaa/Aaa																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250578	26250578	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs190976340		P-0072325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1470	308	709	0	ENST00000446824.2:c.256C>T	p.Gln86Ter	p.Q86*	ENST00000446824	NM_021018.2	86	Cag/Tag																																																																															
ATRX	546	MSKCC	GRCh37	X	76937401	76937401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	65	325	0	ENST00000373344.5:c.3347C>T	p.Ser1116Phe	p.S1116F	ENST00000373344	NM_000489.3	1116	tCc/tTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105553	27105553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	23	527	0	ENST00000324856.7:c.5164C>T	p.Arg1722Ter	p.R1722*	ENST00000324856	NM_006015.4	1722	Cga/Tga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47155393	47155393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	128	456	0	ENST00000409792.3:c.4688G>T	p.Gly1563Val	p.G1563V	ENST00000409792	NM_014159.6	1563	gGc/gTc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81979791	81979791	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372557475		P-0072349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			15	22	447	1	ENST00000359376.3:c.3493G>A	p.Val1165Ile	p.V1165I	ENST00000359376	NM_002661.3	1165	Gtt/Att																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0072349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			11	73	562	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
HIST1H3A	8350	MSKCC	GRCh37	6	26021009	26021009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	27	711	0	ENST00000357647.3:c.292G>A	p.Glu98Lys	p.E98K	ENST00000357647	NM_003529.2	98	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241705	55241705	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	170	431	0	ENST00000275493.2:c.2153T>A	p.Leu718Gln	p.L718Q	ENST00000275493	NM_005228.3	718	cTg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0072349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	506	413	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28891720	28891720	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	45	444	0	ENST00000282397.4:c.3301C>G	p.Pro1101Ala	p.P1101A	ENST00000282397	NM_002019.4	1101	Cca/Gca																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350198	89350199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0072349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			10	29	524	0	ENST00000301030.4:c.2751_2752insTT	p.Glu918LeufsTer60	p.E918Lfs*60	ENST00000301030	NM_001256183.1	917	-/TT																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922795	44922795	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			67	45	446	0	ENST00000377967.4:c.1656C>G	p.Ser552Arg	p.S552R	ENST00000377967	NM_021140.2	552	agC/agG																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0072356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	221	551	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575181	48575181	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	23	203	0	ENST00000342988.3:c.375T>G	p.Ser125Arg	p.S125R	ENST00000342988	NM_005359.5	125	agT/agG																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575185	48575185	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	22	187	0	ENST00000342988.3:c.379T>A	p.Cys127Ser	p.C127S	ENST00000342988	NM_005359.5	127	Tgt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0072357-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	109	711	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366384	15366384	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072357-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	35	502	0	ENST00000263377.2:c.1771A>C	p.Met591Leu	p.M591L	ENST00000263377	NM_058243.2	591	Atg/Ctg																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0072359-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	101	339	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434301	49434301	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0072359-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	116	810	0	ENST00000301067.7:c.7252C>T	p.Gln2418Ter	p.Q2418*	ENST00000301067	NM_003482.3	2418	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830997	72830997	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0072359-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	179	671	0	ENST00000268489.5:c.5584C>T	p.Gln1862Ter	p.Q1862*	ENST00000268489	NM_006885.3	1862	Cag/Tag																																																																															
EP300	2033	MSKCC	GRCh37	22	41569654	41569654	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072359-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	151	461	0	ENST00000263253.7:c.4645A>G	p.Lys1549Glu	p.K1549E	ENST00000263253	NM_001429.3	1549	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912660		P-0072363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	57	422	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145430	58145430	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894340		P-0072363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	74	489	0	ENST00000257904.6:c.71G>A	p.Arg24His	p.R24H	ENST00000257904	NM_000075.3	24	cGt/cAt																																																																															
MSI1	4440	MSKCC	GRCh37	12	120802516	120802516	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0072363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	49	329	0	ENST00000257552.2:c.309+1G>C		p.X103_splice	ENST00000257552	NM_002442.3	103																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52588766	52588766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	58	437	0	ENST00000394830.3:c.4262C>T	p.Pro1421Leu	p.P1421L	ENST00000394830	NM_018313.4	1421	cCt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0072364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	265	574	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	40	358	1	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
APC	324	MSKCC	GRCh37	5	112179000	112179000	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0072368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	69	328	0	ENST00000257430.4:c.7709C>G	p.Ser2570Ter	p.S2570*	ENST00000257430	NM_000038.5	2570	tCa/tGa																																																																															
ETV6	2120	MSKCC	GRCh37	12	11803078	11803078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	21	271	0	ENST00000396373.4:c.17C>A	p.Ala6Asp	p.A6D	ENST00000396373	NM_001987.4	6	gCt/gAt																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260048	19260048	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1211742770		P-0072368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	72	383	0	ENST00000162023.5:c.245C>G	p.Thr82Ser	p.T82S	ENST00000162023		82	aCt/aGt																																																																															
ATRX	546	MSKCC	GRCh37	X	76764005	76764005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	63	432	0	ENST00000373344.5:c.7303C>A	p.His2435Asn	p.H2435N	ENST00000373344	NM_000489.3	2435	Cac/Aac																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662696	227662696	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			784	68	448	0	ENST00000305123.5:c.759C>G	p.Ile253Met	p.I253M	ENST00000305123	NM_005544.2	253	atC/atG																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643265	38643266	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0072368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	46	303	0	ENST00000299084.4:c.736_737del	p.Val246GlnfsTer19	p.V246Qfs*19	ENST00000299084	NM_152594.2	245	atTGtc/attc																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540187	23540187	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	31	321	0	ENST00000380871.4:c.216G>C	p.Gln72His	p.Q72H	ENST00000380871	NM_006167.3	72	caG/caC																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591086	67591089	+	frameshift_variant	Frame_Shift_Del	DEL	ACAA	ACAA	-			P-0072368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	42	264	0	ENST00000274335.5:c.1681_1684del	p.Lys561ValfsTer2	p.K561Vfs*2	ENST00000274335		560	gACAAa/ga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11199376	11199376	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	31	307	0	ENST00000361445.4:c.5115G>A	p.Trp1705Ter	p.W1705*	ENST00000361445	NM_004958.3	1705	tgG/tgA																																																																															
MET	4233	MSKCC	GRCh37	7	116418951	116418952	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0072368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	70	286	1	ENST00000397752.3:c.3462_3463delinsTT	p.Val1155Leu	p.V1155L	ENST00000397752	NM_000245.2	1154	ctGGtg/ctTTtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0072370-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			74	102	499	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0072372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	130	336	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912770	32912771	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1005805156		P-0072372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	26	296	0	ENST00000380152.3:c.4284dup	p.Gln1429SerfsTer9	p.Q1429Sfs*9	ENST00000380152		1426	-/T																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279771	29279771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	42	98	0	ENST00000544604.2:c.17G>A	p.Gly6Asp	p.G6D	ENST00000544604	NM_001206998.1	6	gGc/gAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139411807	139411807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	64	229	0	ENST00000277541.6:c.1472C>A	p.Thr491Lys	p.T491K	ENST00000277541	NM_017617.3	491	aCa/aAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0072373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	110	288	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RB1	5925	MSKCC	GRCh37	13	49047495	49047495	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs587778838		P-0072373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	22	166	0	ENST00000267163.4:c.2490-1G>A		p.X830_splice	ENST00000267163	NM_000321.2	830																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38061264	38061264	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	134	338	0	ENST00000250448.2:c.725C>G	p.Ser242Cys	p.S242C	ENST00000250448	NM_004496.3	242	tCc/tGc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061261	38061261	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	133	330	0	ENST00000250448.2:c.728A>C	p.Tyr243Ser	p.Y243S	ENST00000250448	NM_004496.3	243	tAc/tCc																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230561520	230561520	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0072373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			702	97	396	0				ENST00000391860	NM_001258311.1																																																																																	
ALB	213	MSKCC	GRCh37	4	74279287	74279287	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	127	295	0	ENST00000295897.4:c.994G>T	p.Asp332Tyr	p.D332Y	ENST00000295897	NM_000477.5	332	Gat/Tat																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523142	176523143	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0072373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			772	15	409	0	ENST00000292408.4:c.1906_1907delinsAT	p.Gly636Ile	p.G636I	ENST00000292408	NM_213647.1	636	GGc/ATc																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230561600	230561600	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0072373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	107	300	0				ENST00000391860	NM_001258311.1																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0072382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	109	353	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637135	176637135	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	54	372	1	ENST00000439151.2:c.1735A>G	p.Lys579Glu	p.K579E	ENST00000439151	NM_022455.4	579	Aag/Gag																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553539	106553539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762241140		P-0072387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	64	409	1	ENST00000369096.4:c.1504G>A	p.Ala502Thr	p.A502T	ENST00000369096	NM_001198.3	502	Gcc/Acc																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116218	209116218	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs912110895		P-0072387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	70	163	0	ENST00000345146.2:c.58C>T	p.Arg20Ter	p.R20*	ENST00000345146	NM_005896.2	20	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012410	152012410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	63	125	0	ENST00000262189.6:c.403G>A	p.Ala135Thr	p.A135T	ENST00000262189	NM_170606.2	135	Gct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0072387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	84	174	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ATR	545	MSKCC	GRCh37	3	142280258	142280258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	81	103	0	ENST00000350721.4:c.1176G>T	p.Leu392Phe	p.L392F	ENST00000350721	NM_001184.3	392	ttG/ttT																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682557	37682557	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	132	407	0	ENST00000447079.4:c.3748G>T	p.Glu1250Ter	p.E1250*	ENST00000447079	NM_015083.1	1250	Gag/Tag																																																																															
AR	367	MSKCC	GRCh37	X	66765705	66765705	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	160	525	0	ENST00000374690.3:c.717G>T	p.Leu239Phe	p.L239F	ENST00000374690	NM_000044.3	239	ttG/ttT																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851709	134851709	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs373296912		P-0072387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	126	402	0	ENST00000398015.3:c.1115G>T	p.Arg372Leu	p.R372L	ENST00000398015	NM_004441.4	372	cGc/cTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038891	47038891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	77	262	0	ENST00000329236.7:c.667G>T	p.Asp223Tyr	p.D223Y	ENST00000329236	NM_001204466.1	223	Gac/Tac																																																																															
BARD1	580	MSKCC	GRCh37	2	215595170	215595170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	164	130	0	ENST00000260947.4:c.1966G>T	p.Gly656Cys	p.G656C	ENST00000260947	NM_000465.2	656	Ggt/Tgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47035920	47035920	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072388-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	97	288	0	ENST00000329236.7:c.367C>T	p.Gln123Ter	p.Q123*	ENST00000329236	NM_001204466.1	123	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0072388-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	41	159	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ATM	472	MSKCC	GRCh37	11	108153453	108153453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072388-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	34	143	0	ENST00000278616.4:c.3593C>T	p.Ser1198Phe	p.S1198F	ENST00000278616	NM_000051.3	1198	tCt/tTt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81574723	81574723	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072388-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	36	231	0	ENST00000298171.2:c.619C>G	p.Leu207Val	p.L207V	ENST00000298171	NM_000369.2	207	Cta/Gta																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257455	16257455	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138972634		P-0072388-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	64	295	0	ENST00000375759.3:c.4720G>A	p.Asp1574Asn	p.D1574N	ENST00000375759	NM_015001.2	1574	Gat/Aat																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411180	63411180	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072388-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	74	344	0	ENST00000330258.3:c.1987G>T	p.Val663Leu	p.V663L	ENST00000330258	NM_152424.3	663	Gtg/Ttg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198257809	198257809	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072388-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	67	278	0	ENST00000335508.6:c.3643G>T	p.Val1215Leu	p.V1215L	ENST00000335508	NM_012433.2	1215	Gta/Tta																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910611	32910611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072388-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	58	255	0	ENST00000380152.3:c.2119G>A	p.Asp707Asn	p.D707N	ENST00000380152		707	Gat/Aat																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205133	128205133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072388-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	133	461	0	ENST00000341105.2:c.308C>A	p.Ala103Glu	p.A103E	ENST00000341105	NM_032638.4	103	gCa/gAa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0072390-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	210	243	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600447	10600447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072390-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	13	484	1	ENST00000171111.5:c.1408C>T	p.Arg470Cys	p.R470C	ENST00000171111	NM_203500.1	470	Cgt/Tgt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453137	140453138	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGT			P-0072390-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	84	161	0	ENST00000288602.6:c.1795_1797dup	p.Thr599dup	p.T599dup	ENST00000288602	NM_004333.4	599	-/ACA																																																																															
ATR	545	MSKCC	GRCh37	3	142272848	142272848	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072390-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			75	35	119	0	ENST00000350721.4:c.2351A>T	p.Asp784Val	p.D784V	ENST00000350721	NM_001184.3	784	gAt/gTt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276289	15276289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072390-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	198	362	0	ENST00000263388.2:c.5705G>T	p.Arg1902Leu	p.R1902L	ENST00000263388	NM_000435.2	1902	cGc/cTc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106522613	106522613	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	80	203	0	ENST00000359195.3:c.2590C>A	p.Leu864Ile	p.L864I	ENST00000359195	NM_002649.2	864	Ctc/Atc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126692	5126692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	26	265	0	ENST00000381652.3:c.3300G>A	p.Met1100Ile	p.M1100I	ENST00000381652	NM_004972.3	1100	atG/atA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0072391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	135	304	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969914	161969914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	57	292	0	ENST00000366898.1:c.1055G>A	p.Cys352Tyr	p.C352Y	ENST00000366898	NM_004562.2	352	tGc/tAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29553669	29553669	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	57	388	0	ENST00000358273.4:c.2218G>T	p.Glu740Ter	p.E740*	ENST00000358273	NM_001042492.2	740	Gag/Tag																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056086	26056086	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	79	409	0	ENST00000343677.2:c.571A>G	p.Lys191Glu	p.K191E	ENST00000343677	NM_005319.3	191	Aag/Gag																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2047335	2047336	+	missense_variant	Missense_Mutation	DNP	GG	GG	CC			P-0072391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	29	148	1	ENST00000349721.2:c.897_898inv	p.Ala300Pro	p.A300P	ENST00000349721	NM_003070.3	299	gcGGcc/gcCCcc																																																																															
CDH1	999	MSKCC	GRCh37	16	68835627	68835627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	110	483	0	ENST00000261769.5:c.218C>A	p.Thr73Asn	p.T73N	ENST00000261769	NM_004360.3	73	aCc/aAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528589	8528589	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0072391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	48	248	0	ENST00000356435.5:c.541+2T>A		p.X181_splice	ENST00000356435		181																																																																																
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0072398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	175	433	1	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0072398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	106	217	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0057384-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			293	242	687	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974783	21974786	+	frameshift_variant	Frame_Shift_Del	DEL	CAGT	CAGT	-			P-0057384-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			267	238	713	0	ENST00000304494.5:c.41_44del	p.Asp14GlyfsTer11	p.D14Gfs*11	ENST00000304494	NM_000077.4	14	gACTGg/gg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974786	21974786	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057384-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			489	26	703	1	ENST00000304494.5:c.41A>G	p.Asp14Gly	p.D14G	ENST00000304494	NM_000077.4	14	gAc/gGc																																																																															
KIT	3815	MSKCC	GRCh37	4	55570022	55570022	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057384-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			431	82	287	0	ENST00000288135.5:c.889G>T	p.Gly297Ter	p.G297*	ENST00000288135	NM_000222.2	297	Gga/Tga																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416585	121416585	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057384-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			375	140	474	0	ENST00000257555.6:c.14T>A	p.Leu5Gln	p.L5Q	ENST00000257555		5	cTg/cAg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177584	56177584	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368201444		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			380	117	400	0	ENST00000399503.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000399503	NM_005921.1	853	Cgt/Tgt																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			178	86	255	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			343	85	286	1	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			329	19	303	0	ENST00000303115.3:c.361del	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78428480	78428480	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs569795654		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			321	103	345	0	ENST00000370768.2:c.1319G>A	p.Arg440Gln	p.R440Q	ENST00000370768	NM_003902.3	440	cGg/cAg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165213	47165213	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			387	62	321	0	ENST00000409792.3:c.913del	p.Thr305GlnfsTer35	p.T305Qfs*35	ENST00000409792	NM_014159.6	305	Aca/ca																																																																															
APC	324	MSKCC	GRCh37	5	112157594	112157594	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			241	58	228	0	ENST00000257430.4:c.1314G>A	p.Met438Ile	p.M438I	ENST00000257430	NM_000038.5	438	atG/atA																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			462	28	500	0	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914070	32914070	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			381	24	325	0	ENST00000380152.3:c.5583del	p.Val1862Ter	p.V1862*	ENST00000380152		1860	Aaa/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992703	72992703	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1289295486		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			296	90	498	1	ENST00000268489.5:c.1342G>A	p.Asp448Asn	p.D448N	ENST00000268489	NM_006885.3	448	Gac/Aac																																																																															
RASA1	5921	MSKCC	GRCh37	5	86668008	86668008	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			320	105	285	0	ENST00000274376.6:c.1772G>A	p.Arg591His	p.R591H	ENST00000274376	NM_002890.2	591	cGt/cAt																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			303	76	409	7	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87563405	87563405	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147652140		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			346	76	403	0	ENST00000277120.3:c.1793G>A	p.Arg598His	p.R598H	ENST00000277120		598	cGc/cAc																																																																															
SYK	6850	MSKCC	GRCh37	9	93657854	93657854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			398	90	400	1	ENST00000375746.1:c.1880G>A	p.Arg627His	p.R627H	ENST00000375746	NM_001174167.1	627	cGc/cAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161939	47161939	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			444	39	387	2	ENST00000409792.3:c.4187del	p.Asn1396MetfsTer16	p.N1396Mfs*16	ENST00000409792	NM_014159.6	1396	aAt/at																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400905	72400905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			401	30	347	0	ENST00000357731.5:c.266C>A	p.Pro89His	p.P89H	ENST00000357731	NM_173808.2	89	cCt/cAt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863319	57863319	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			395	23	424	2	ENST00000228682.2:c.1418del	p.Gly473AlafsTer40	p.G473Afs*40	ENST00000228682	NM_005269.2	472	Ggg/gg																																																																															
MDM4	4194	MSKCC	GRCh37	1	204511935	204511935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			285	108	307	0	ENST00000367182.3:c.535G>A	p.Ala179Thr	p.A179T	ENST00000367182	NM_001278516.1	179	Gcc/Acc																																																																															
MGA	23269	MSKCC	GRCh37	15	41988452	41988455	+	frameshift_variant	Frame_Shift_Del	DEL	CAAA	CAAA	-			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			416	22	374	0	ENST00000219905.7:c.1246_1249del	p.Asn416ValfsTer7	p.N416Vfs*7	ENST00000219905	NM_001164273.1	415	tCAAAc/tc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024254	31024254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146747814		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			351	87	448	0	ENST00000375687.4:c.3739C>T	p.Arg1247Cys	p.R1247C	ENST00000375687	NM_015338.5	1247	Cgt/Tgt																																																																															
CD274	29126	MSKCC	GRCh37	9	5466787	5466787	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			329	115	450	0	ENST00000381577.3:c.813del	p.Lys271AsnfsTer44	p.K271Nfs*44	ENST00000381577	NM_014143.3	270	Aaa/aa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59876546	59876546	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150624408		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			341	81	364	0	ENST00000259008.2:c.1255C>T	p.Arg419Trp	p.R419W	ENST00000259008	NM_032043.2	419	Cgg/Tgg																																																																															
ERG	2078	MSKCC	GRCh37	21	39795341	39795341	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1028107759		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			351	84	383	0	ENST00000288319.7:c.379G>A	p.Val127Met	p.V127M	ENST00000288319	NM_182918.3	127	Gtg/Atg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2954933	2954933	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755425231		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			335	169	474	0	ENST00000396946.4:c.2777C>T	p.Pro926Leu	p.P926L	ENST00000396946	NM_032415.4	926	cCg/cTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			405	89	540	0	ENST00000407977.2:c.1975_1976dup	p.Pro660ValfsTer41	p.P660Vfs*41	ENST00000407977		659	ggt/ggGGt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79950727	79950727	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1574197		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			173	39	305	0	ENST00000265081.6:c.181G>C	p.Ala61Pro	p.A61P	ENST00000265081	NM_002439.4	61	Gca/Cca																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			243	174	345	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900244	101900246	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			358	85	348	0	ENST00000374994.4:c.683_685del	p.Glu228del	p.E228del	ENST00000374994	NM_004612.2	226	ggAGAa/gga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670340	134670340	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1415689583		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			270	84	378	0	ENST00000398015.3:c.251G>A	p.Arg84His	p.R84H	ENST00000398015	NM_004441.4	84	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101068	27101068	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			336	93	447	0	ENST00000324856.7:c.4354del	p.Gln1452ArgfsTer29	p.Q1452Rfs*29	ENST00000324856	NM_006015.4	1450	ggC/gg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399516	139399516	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs533102436		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			317	78	475	0	ENST00000277541.6:c.4627G>A	p.Gly1543Arg	p.G1543R	ENST00000277541	NM_017617.3	1543	Ggg/Agg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562577	21562577	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1395329857		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			232	14	358	0	ENST00000382592.4:c.1342C>T	p.Arg448Cys	p.R448C	ENST00000382592	NM_014572.2	448	Cgt/Tgt																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17387368	17387368	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754753033		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			413	93	488	1	ENST00000359435.4:c.634C>T	p.Arg212Cys	p.R212C	ENST00000359435	NM_001033549.1	212	Cgc/Tgc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851324	156851324	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759637817		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			238	70	405	0	ENST00000524377.1:c.2281C>T	p.Arg761Trp	p.R761W	ENST00000524377	NM_002529.3	761	Cgg/Tgg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100049	157100049	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1256773336		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			319	28	483	0	ENST00000346085.5:c.986C>G	p.Ala329Gly	p.A329G	ENST00000346085	NM_020732.3	329	gCa/gGa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805103	89805103	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147406377		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			394	38	482	0	ENST00000389301.3:c.4274G>A	p.Arg1425His	p.R1425H	ENST00000389301	NM_000135.2	1425	cGt/cAt																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099215	4099215	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			242	81	436	0	ENST00000262948.5:c.903del	p.Arg303AlafsTer24	p.R303Afs*24	ENST00000262948	NM_030662.3	301	ccC/cc																																																																															
APC	324	MSKCC	GRCh37	5	112102927	112102927	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746592911		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			289	71	339	1	ENST00000257430.4:c.262C>T	p.Arg88Trp	p.R88W	ENST00000257430	NM_000038.5	88	Cgg/Tgg																																																																															
PARP1	142	MSKCC	GRCh37	1	226566960	226566960	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371066735		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			393	108	445	0	ENST00000366794.5:c.1628C>T	p.Ala543Val	p.A543V	ENST00000366794	NM_001618.3	543	gCg/gTg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618494	37618494	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			409	108	462	0	ENST00000447079.4:c.174del	p.Glu59LysfsTer33	p.E59Kfs*33	ENST00000447079	NM_015083.1	57	aCc/ac																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120489	94120489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			306	76	380	0	ENST00000369303.4:c.562G>A	p.Asp188Asn	p.D188N	ENST00000369303	NM_004440.3	188	Gat/Aat																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793263	242793263	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754424677		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			335	79	433	0	ENST00000334409.5:c.814C>T	p.Arg272Trp	p.R272W	ENST00000334409	NM_005018.2	272	Cgg/Tgg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3642754	3642754	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747563780		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			306	99	388	0	ENST00000294008.3:c.2273C>T	p.Ala758Val	p.A758V	ENST00000294008	NM_032444.2	758	gCg/gTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110004	115110004	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1201751425		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			326	24	389	0	ENST00000257566.3:c.1874G>A	p.Arg625His	p.R625H	ENST00000257566	NM_016569.3	625	cGc/cAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271692	15271692	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			285	84	530	0	ENST00000263388.2:c.6747del	p.Glu2250AsnfsTer79	p.E2250Nfs*79	ENST00000263388	NM_000435.2	2249	ccC/cc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100044	157100049	+	inframe_deletion	In_Frame_Del	DEL	AGGAGC	AGGAGC	-	rs1193500042		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			305	43	475	0	ENST00000346085.5:c.992_997del	p.Ala331_Gly332del	p.A331_G332del	ENST00000346085	NM_020732.3	327	ggAGGAGCa/gga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220059	5220059	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1265450607		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			266	71	459	1	ENST00000357368.4:c.3656C>T	p.Thr1219Met	p.T1219M	ENST00000357368	NM_002850.3	1219	aCg/aTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15967427	15967427	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1468999160		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			450	117	371	0	ENST00000268712.3:c.5176C>T	p.Arg1726Trp	p.R1726W	ENST00000268712	NM_006311.3	1726	Cgg/Tgg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495835	56495835	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140679673		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			278	55	301	0	ENST00000267101.3:c.4025C>T	p.Thr1342Met	p.T1342M	ENST00000267101	NM_001982.3	1342	aCg/aTg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99456353	99456353	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371466243		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			343	98	388	0	ENST00000268035.6:c.1670C>T	p.Pro557Leu	p.P557L	ENST00000268035	NM_000875.3	557	cCg/cTg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463310	25463310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			284	183	402	0	ENST00000264709.3:c.2183G>A	p.Gly728Asp	p.G728D	ENST00000264709	NM_175629.2	728	gGc/gAc																																																																															
CBL	867	MSKCC	GRCh37	11	119169109	119169109	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373587039		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			365	135	468	0	ENST00000264033.4:c.2293G>A	p.Glu765Lys	p.E765K	ENST00000264033	NM_005188.3	765	Gag/Aag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210710	36210710	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745637683		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			338	91	399	1	ENST00000222270.7:c.461G>A	p.Arg154His	p.R154H	ENST00000222270	NM_014727.1	154	cGc/cAc																																																																															
TERT	7015	MSKCC	GRCh37	5	1260647	1260647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			359	102	444	0	ENST00000310581.5:c.2912G>A	p.Arg971His	p.R971H	ENST00000310581	NM_198253.2	971	cGt/cAt																																																																															
CDH1	999	MSKCC	GRCh37	16	68847398	68847398	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			357	120	369	0	ENST00000261769.5:c.1320G>T	p.Lys440Asn	p.K440N	ENST00000261769	NM_004360.3	440	aaG/aaT																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346534	89346534	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753112904		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			300	36	486	0	ENST00000301030.4:c.6416C>T	p.Pro2139Leu	p.P2139L	ENST00000301030	NM_001256183.1	2139	cCg/cTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188944	11188944	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			359	93	362	0	ENST00000361445.4:c.5779del	p.Val1927Ter	p.V1927*	ENST00000361445	NM_004958.3	1927	Gtg/tg																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			382	85	519	0	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129427	64129427	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367990117		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			365	103	452	0	ENST00000334205.4:c.859G>A	p.Ala287Thr	p.A287T	ENST00000334205	NM_003942.2	287	Gcg/Acg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703575	47703575	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs63751432		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			363	228	403	0	ENST00000233146.2:c.2075G>T	p.Gly692Val	p.G692V	ENST00000233146	NM_000251.2	692	gGg/gTg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936662	49936662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			355	114	460	0	ENST00000296474.3:c.1265G>A	p.Cys422Tyr	p.C422Y	ENST00000296474	NM_002447.2	422	tGc/tAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42042710	42042710	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1183311222		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			348	123	396	1	ENST00000219905.7:c.6905A>G	p.Glu2302Gly	p.E2302G	ENST00000219905	NM_001164273.1	2302	gAa/gGa																																																																															
ALK	238	MSKCC	GRCh37	2	29446352	29446352	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			446	28	452	0	ENST00000389048.3:c.3215A>C	p.Glu1072Ala	p.E1072A	ENST00000389048	NM_004304.4	1072	gAg/gCg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713626	30713626	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			418	34	463	0	ENST00000359013.4:c.1029del	p.Lys344AsnfsTer5	p.K344Nfs*5	ENST00000359013	NM_001024847.2	342	ttG/tt																																																																															
UPF1	5976	MSKCC	GRCh37	19	18972945	18972945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			327	84	428	0	ENST00000262803.5:c.2584G>T	p.Ala862Ser	p.A862S	ENST00000262803	NM_002911.3	862	Gcc/Tcc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151856003	151856003	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			417	208	424	0	ENST00000262189.6:c.11615A>G	p.Glu3872Gly	p.E3872G	ENST00000262189	NM_170606.2	3872	gAa/gGa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266843	41266843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			340	78	427	0	ENST00000349496.5:c.514G>A	p.Ala172Thr	p.A172T	ENST00000349496	NM_001904.3	172	Gca/Aca																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670316	134670316	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			327	40	381	0	ENST00000398015.3:c.227T>C	p.Phe76Ser	p.F76S	ENST00000398015	NM_004441.4	76	tTc/tCc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638487	176638487	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			455	160	494	0	ENST00000439151.2:c.3087A>T	p.Lys1029Asn	p.K1029N	ENST00000439151	NM_022455.4	1029	aaA/aaT																																																																															
NF1	4763	MSKCC	GRCh37	17	29663439	29663439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			415	136	316	2	ENST00000358273.4:c.6095C>T	p.Ala2032Val	p.A2032V	ENST00000358273	NM_001042492.2	2032	gCa/gTa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350065	89350065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			517	30	506	0	ENST00000301030.4:c.2885G>T	p.Arg962Met	p.R962M	ENST00000301030	NM_001256183.1	962	aGg/aTg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38282130	38282130	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			411	41	505	0	ENST00000425967.3:c.926A>C	p.Lys309Thr	p.K309T	ENST00000425967	NM_001174067.1	309	aAg/aCg																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919601	96919601	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144326855		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			362	61	389	0	ENST00000258439.3:c.662C>T	p.Pro221Leu	p.P221L	ENST00000258439	NM_001193304.2	221	cCg/cTg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39741530	39741530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			338	101	382	0	ENST00000361337.2:c.1417C>T	p.Arg473Trp	p.R473W	ENST00000361337	NM_003286.2	473	Cgg/Tgg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61726954	61726955	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			381	102	308	0	ENST00000401558.2:c.483_484del	p.Cys164SerfsTer3	p.C164Sfs*3	ENST00000401558	NM_003400.3	161	gaAAgt/gagt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151851399	151851399	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776400633		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			562	40	420	0	ENST00000262189.6:c.12092C>T	p.Pro4031Leu	p.P4031L	ENST00000262189	NM_170606.2	4031	cCg/cTg																																																																															
NADK	65220	MSKCC	GRCh37	1	1691174	1691174	+	intron_variant	Intron	SNP	G	G	A	rs1358363293		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			314	79	402	0	ENST00000341426.5:c.263+2217C>T		p.*88*	ENST00000341426	NM_023018.4																																																																																	
RHOA	387	MSKCC	GRCh37	3	49400044	49400044	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			463	39	321	0	ENST00000418115.1:c.293del	p.Lys98SerfsTer34	p.K98Sfs*34	ENST00000418115	NM_001664.2	98	aAg/ag																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004664	150004664	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1041652588		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			488	40	460	0	ENST00000253339.5:c.1561C>T	p.Pro521Ser	p.P521S	ENST00000253339		521	Cca/Tca																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99180078	99180078	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752859548		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			401	93	401	0	ENST00000074304.5:c.2021G>A	p.Arg674His	p.R674H	ENST00000074304	NM_001134224.1	674	cGt/cAt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198263239	198263239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			479	34	324	0	ENST00000335508.6:c.3080G>T	p.Arg1027Ile	p.R1027I	ENST00000335508	NM_012433.2	1027	aGa/aTa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138461437	138461437	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			299	74	300	0	ENST00000289153.2:c.584del	p.Gly195GlufsTer5	p.G195Efs*5	ENST00000289153	NM_006219.2	195	gGa/ga																																																																															
XIAP	331	MSKCC	GRCh37	X	123020314	123020314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			114	94	163	0	ENST00000355640.3:c.802C>T	p.Arg268Trp	p.R268W	ENST00000355640		268	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268141	153268141	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752259687		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			459	105	339	0	ENST00000281708.4:c.667C>T	p.Arg223Cys	p.R223C	ENST00000281708	NM_033632.3	223	Cgc/Tgc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11027392	11027392	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			458	31	442	0	ENST00000327064.4:c.959G>T	p.Gly320Val	p.G320V	ENST00000327064	NM_199141.1	320	gGa/gTa																																																																															
KDR	3791	MSKCC	GRCh37	4	55981142	55981142	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772404582		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			250	69	337	0	ENST00000263923.4:c.557C>T	p.Thr186Ile	p.T186I	ENST00000263923	NM_002253.2	186	aCt/aTt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342593	118342593	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			403	107	381	0	ENST00000534358.1:c.719A>T	p.Asp240Val	p.D240V	ENST00000534358	NM_005933.3	240	gAc/gTc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279996	29279996	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1355467298		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			330	102	518	0	ENST00000544604.2:c.242T>C	p.Leu81Pro	p.L81P	ENST00000544604	NM_001206998.1	81	cTc/cCc																																																																															
HRAS	3265	MSKCC	GRCh37	11	533935	533935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			372	27	402	0	ENST00000311189.7:c.121C>T	p.Arg41Trp	p.R41W	ENST00000311189		41	Cgg/Tgg																																																																															
ARAF	369	MSKCC	GRCh37	X	47422683	47422683	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140920401		P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			149	111	205	0	ENST00000377045.4:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000377045	NM_001654.4	52	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603095	48603095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063661-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			365	22	315	0	ENST00000342988.3:c.1396G>A	p.Ala466Thr	p.A466T	ENST00000342988	NM_005359.5	466	Gca/Aca																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0064422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	129	413	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248058	110248058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755781036		P-0064422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	59	418	0	ENST00000374672.4:c.1414G>A	p.Ala472Thr	p.A472T	ENST00000374672	NM_004235.4	472	Gcc/Acc																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502841	186502841	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	106	463	0	ENST00000323963.5:c.299A>T	p.Lys100Met	p.K100M	ENST00000323963		100	aAg/aTg																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495705	72495705	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0064422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	79	385	0	ENST00000477973.2:c.365A>C	p.Asn123His	p.N123H	ENST00000477973	NM_012234.5	123	Aac/Cac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0065024-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			134	64	226	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68847399	68847399	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0065024-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			80	111	355	0	ENST00000261769.5:c.1320+1G>T		p.X440_splice	ENST00000261769	NM_004360.3	440																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38061185	38061202	+	inframe_deletion	In_Frame_Del	DEL	GCACTTGAAGCGCTTCTG	GCACTTGAAGCGCTTCTG	-			P-0065024-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			180	94	405	0	ENST00000250448.2:c.787_804del	p.Gln263_Cys268del	p.Q263_C268del	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTCAAGTGC/-																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46583377	46583377	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065024-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			191	76	298	0	ENST00000263734.3:c.305T>C	p.Val102Ala	p.V102A	ENST00000263734	NM_001430.4	102	gTg/gCg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877877	151877877	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065024-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			266	104	440	0	ENST00000262189.6:c.7068del	p.Gly2357AspfsTer8	p.G2357Dfs*8	ENST00000262189	NM_170606.2	2356	ccT/cc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207077	1207077	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066794-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			49	227	449	0	ENST00000326873.7:c.169del	p.Glu57LysfsTer7	p.E57Kfs*7	ENST00000326873	NM_000455.4	55	ctG/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066794-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			29	1017	477	0	ENST00000269305.4:c.379T>A	p.Ser127Thr	p.S127T	ENST00000269305	NM_001126112.2	127	Tcc/Acc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610475	10610475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066794-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			27	412	472	0	ENST00000171111.5:c.235G>T	p.Val79Phe	p.V79F	ENST00000171111	NM_203500.1	79	Gtc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0066794-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			206	301	246	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781242	3781242	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066794-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			282	188	489	0	ENST00000262367.5:c.5123A>G	p.Asn1708Ser	p.N1708S	ENST00000262367	NM_004380.2	1708	aAc/aGc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979365	93979365	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs968186662		P-0066794-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	317	365	0	ENST00000369303.4:c.1463G>A	p.Arg488Gln	p.R488Q	ENST00000369303	NM_004440.3	488	cGg/cAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76920179	76920180	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0066794-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			45	188	164	0	ENST00000373344.5:c.3897dup	p.Lys1300GlufsTer9	p.K1300Efs*9	ENST00000373344	NM_000489.3	1299	-/G																																																																															
MPL	4352	MSKCC	GRCh37	1	43805698	43805698	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066794-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			453	24	392	0	ENST00000372470.3:c.754T>A	p.Tyr252Asn	p.Y252N	ENST00000372470	NM_005373.2	252	Tac/Aac																																																																															
APC	324	MSKCC	GRCh37	5	112175974	112175974	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066794-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			439	24	410	0	ENST00000257430.4:c.4683G>T	p.Lys1561Asn	p.K1561N	ENST00000257430	NM_000038.5	1561	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0070512-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			231	371	384	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913273		P-0070512-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			79	173	142	0	ENST00000263967.3:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000263967	NM_006218.2	542	Gaa/Caa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943692	9943692	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749504561		P-0070512-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			313	180	308	0	ENST00000330684.3:c.1249G>A	p.Val417Ile	p.V417I	ENST00000330684	NM_001134407.1	417	Gtc/Atc																																																																															
APLNR	187	MSKCC	GRCh37	11	57003535	57003535	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs760732461		P-0070512-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			271	164	421	0	ENST00000257254.3:c.944G>A	p.Arg315His	p.R315H	ENST00000257254		315	cGc/cAc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797292	135797316	+	frameshift_variant	Frame_Shift_Del	DEL	CATAAAGGCGATGAAAGAGTGCGTA	CATAAAGGCGATGAAAGAGTGCGTA	-			P-0070512-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			565	224	288	0	ENST00000298552.3:c.553_577del	p.Tyr185GlufsTer17	p.Y185Efs*17	ENST00000298552	NM_001162426.1	185	TACGCACTCTTTCATCGCCTTTATGga/ga																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93973596	93973596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070512-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			332	63	212	0	ENST00000369303.4:c.1780G>A	p.Glu594Lys	p.E594K	ENST00000369303	NM_004440.3	594	Gaa/Aaa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23634432	23634432	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070512-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			375	59	297	0	ENST00000261584.4:c.2854G>C	p.Asp952His	p.D952H	ENST00000261584	NM_024675.3	952	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0071406-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			218	247	485	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447846	49447846	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071406-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			211	267	436	0	ENST00000301067.7:c.588del	p.Cys197AlafsTer11	p.C197Afs*11	ENST00000301067	NM_003482.3	196	ccC/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0071406-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			217	193	323	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158610	26158610	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071406-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			167	16	251	0	ENST00000289316.2:c.213C>G	p.Phe71Leu	p.F71L	ENST00000289316	NM_138720.2	71	ttC/ttG																																																																															
TOP1	7150	MSKCC	GRCh37	20	39741529	39741530	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGA			P-0071406-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			512	85	373	1	ENST00000361337.2:c.1418_1419insACG	p.Arg473dup	p.R473dup	ENST00000361337	NM_003286.2	473	-/CGA																																																																															
ARID2	196528	MSKCC	GRCh37	12	46215214	46215214	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071406-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			149	32	223	0	ENST00000334344.6:c.649T>C	p.Phe217Leu	p.F217L	ENST00000334344	NM_152641.2	217	Ttt/Ctt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0071578-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			489	11	429	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0071578-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			622	26	454	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205119	61205120	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0071759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	106	279	0	ENST00000301761.2:c.61dup	p.Leu21ProfsTer18	p.L21Pfs*18	ENST00000301761	NM_017841.2	20	agc/agCc																																																																															
GAB2	9846	MSKCC	GRCh37	11	77937893	77937894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0071759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1519	133	400	0	ENST00000361507.4:c.824dup	p.His275GlnfsTer15	p.H275Qfs*15	ENST00000361507	NM_080491.2	275	cat/caAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830936	72830936	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	114	440	0	ENST00000268489.5:c.5645T>C	p.Ile1882Thr	p.I1882T	ENST00000268489	NM_006885.3	1882	aTc/aCc																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271513	26271513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	132	490	0	ENST00000305910.3:c.100G>T	p.Gly34Cys	p.G34C	ENST00000305910	NM_003534.2	34	Ggc/Tgc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187149	38187149	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0071759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1523	551	371	2	ENST00000317025.8:c.1328C>G	p.Ser443Ter	p.S443*	ENST00000317025	NM_023034.1	443	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0071870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	109	288	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519963		P-0071870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	50	166	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690834	89690834	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0071870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	39	161	0	ENST00000371953.3:c.243del	p.Phe81LeufsTer18	p.F81Lfs*18	ENST00000371953	NM_000314.4	81	Ttt/tt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376015	8376015	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	52	258	0	ENST00000356435.5:c.4582C>A	p.Pro1528Thr	p.P1528T	ENST00000356435		1528	Cct/Act																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789629	3789630	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0071870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	112	278	0	ENST00000262367.5:c.4229_4230del	p.Phe1410TrpfsTer10	p.F1410Wfs*10	ENST00000262367	NM_004380.2	1410	tTT/t																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44879875	44879875	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	29	117	0	ENST00000377967.4:c.464A>G	p.Glu155Gly	p.E155G	ENST00000377967	NM_021140.2	155	gAg/gGg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32918733	32918733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	43	183	0	ENST00000380152.3:c.6880G>T	p.Asp2294Tyr	p.D2294Y	ENST00000380152		2294	Gac/Tac																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643682	52643682	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0071870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	98	235	0	ENST00000394830.3:c.2214C>A	p.Tyr738Ter	p.Y738*	ENST00000394830	NM_018313.4	738	taC/taA																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610154	10610154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	33	415	0	ENST00000171111.5:c.556G>T	p.Gly186Cys	p.G186C	ENST00000171111	NM_203500.1	186	Ggc/Tgc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012420	29012420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	22	335	0	ENST00000282397.4:c.451G>A	p.Gly151Arg	p.G151R	ENST00000282397	NM_002019.4	151	Gga/Aga																																																																															
STK11	6794	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	40	398	0	ENST00000326873.7:c.709G>A	p.Asp237Asn	p.D237N	ENST00000326873	NM_000455.4	237	Gac/Aac																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811697	102811697	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1356336413		P-0072020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	42	538	0	ENST00000307046.8:c.487G>A	p.Glu163Lys	p.E163K	ENST00000307046	NM_001111285.1	163	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0072020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	17	232	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2202704	2202704	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	24	358	0	ENST00000398665.3:c.713T>C	p.Ile238Thr	p.I238T	ENST00000398665	NM_032482.2	238	aTa/aCa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635124	87635124	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	34	326	0	ENST00000277120.3:c.2176G>C	p.Gly726Arg	p.G726R	ENST00000277120		726	Ggt/Cgt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115871	8115871	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	34	459	0	ENST00000346208.3:c.1217T>C	p.Ile406Thr	p.I406T	ENST00000346208		406	aTc/aCc																																																																															
CIC	23152	MSKCC	GRCh37	19	42795053	42795056	+	frameshift_variant	Frame_Shift_Ins	INS	GGGC	GGGC	AGGGA			P-0072020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	51	458	1	ENST00000575354.2:c.2133_2136delinsAGGGA	p.Met711IlefsTer52	p.M711Ifs*52	ENST00000575354	NM_015125.3	711	atGGGC/atAGGGA																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560476	95560476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072024-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	112	473	0	ENST00000343455.3:c.5113G>A	p.Glu1705Lys	p.E1705K	ENST00000343455	NM_177438.2	1705	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0072024-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	135	448	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0072024-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	92	317	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072024-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	124	495	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378648	25378648	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072024-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	491	343	0	ENST00000256078.4:c.350A>G	p.Lys117Arg	p.K117R	ENST00000256078	NM_033360.2	117	aAa/aGa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88671949	88671949	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0072024-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	97	291	0	ENST00000360948.2:c.1221T>A	p.Phe407Leu	p.F407L	ENST00000360948	NM_001012338.2	407	ttT/ttA																																																																															
FANCA	2175	MSKCC	GRCh37	16	89857924	89857924	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072024-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	49	510	0	ENST00000389301.3:c.1246G>T	p.Ala416Ser	p.A416S	ENST00000389301	NM_000135.2	416	Gcc/Tcc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275239	41275239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072024-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	173	554	0	ENST00000349496.5:c.1405C>A	p.Arg469Ser	p.R469S	ENST00000349496	NM_001904.3	469	Cgt/Agt																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818909	32818909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072024-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	130	419	0	ENST00000354258.4:c.1042G>A	p.Val348Ile	p.V348I	ENST00000354258	NM_000593.5	348	Gta/Ata																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519997		P-0072025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	174	544	0	ENST00000269305.4:c.332T>A	p.Leu111Gln	p.L111Q	ENST00000269305	NM_001126112.2	111	cTg/cAg																																																																															
EP300	2033	MSKCC	GRCh37	22	41574216	41574216	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	197	509	0	ENST00000263253.7:c.6501G>C	p.Gln2167His	p.Q2167H	ENST00000263253	NM_001429.3	2167	caG/caC																																																																															
BRCA1	672	MSKCC	GRCh37	17	41228619	41228619	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs80357130		P-0072025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	61	353	0	ENST00000357654.3:c.4370C>A	p.Ser1457Ter	p.S1457*	ENST00000357654	NM_007294.3	1457	tCa/tAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181822	56181822	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	66	319	0	ENST00000399503.3:c.4046A>G	p.Tyr1349Cys	p.Y1349C	ENST00000399503	NM_005921.1	1349	tAc/tGc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40461115	40461115	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0072025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	77	222	0	ENST00000345506.4:c.2113G>C	p.Glu705Gln	p.E705Q	ENST00000345506	NM_003152.3	705	Gag/Cag																																																																															
CCNE1	898	MSKCC	GRCh37	19	30311667	30311667	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0072025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	63	320	0	ENST00000262643.3:c.521A>T	p.Asp174Val	p.D174V	ENST00000262643	NM_001238.2	174	gAc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448693	49448693	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			736	76	484	0	ENST00000301067.7:c.166C>G	p.Gln56Glu	p.Q56E	ENST00000301067	NM_003482.3	56	Cag/Gag																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612978	228612978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	218	710	1	ENST00000366696.1:c.49C>T	p.Pro17Ser	p.P17S	ENST00000366696	NM_003493.2	17	Ccg/Tcg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275059	41275059	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	126	463	0	ENST00000349496.5:c.1225C>G	p.Leu409Val	p.L409V	ENST00000349496	NM_001904.3	409	Ctg/Gtg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426701	212426701	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0072025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	110	462	0	ENST00000342788.4:c.2414T>A	p.Leu805Ter	p.L805*	ENST00000342788	NM_005235.2	805	tTg/tAg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099334	4099334	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs138873805		P-0072025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	173	564	1	ENST00000262948.5:c.784G>T	p.Val262Phe	p.V262F	ENST00000262948	NM_030662.3	262	Gtc/Ttc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873461	151873461	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	111	534	0	ENST00000262189.6:c.9077C>G	p.Ser3026Cys	p.S3026C	ENST00000262189	NM_170606.2	3026	tCt/tGt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120529628	120529628	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1655	177	500	0	ENST00000256646.2:c.829G>C	p.Asp277His	p.D277H	ENST00000256646	NM_024408.3	277	Gat/Cat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860814	151860814	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	162	522	0	ENST00000262189.6:c.9848G>C	p.Ser3283Thr	p.S3283T	ENST00000262189	NM_170606.2	3283	aGt/aCt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261809	16261811	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0072025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	211	637	0	ENST00000375759.3:c.9077_9079del	p.Pro3026del	p.P3026del	ENST00000375759	NM_015001.2	3025	tCTCct/tct																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624800	9624800	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072025-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	128	414	0	ENST00000353224.5:c.177C>G	p.Ile59Met	p.I59M	ENST00000353224	NM_177990.2	59	atC/atG																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982440	25982440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0072029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	65	318	1	ENST00000435504.4:c.850C>T	p.Arg284Ter	p.R284*	ENST00000435504		284	Cga/Tga																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500564	99500565	+	missense_variant	Missense_Mutation	DNP	GT	GT	TG			P-0072029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	79	520	0	ENST00000268035.6:c.3997_3998delinsTG	p.Val1333Trp	p.V1333W	ENST00000268035	NM_000875.3	1333	GTg/TGg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220439	1220439	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0072038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	321	530	0	ENST00000326873.7:c.532A>T	p.Lys178Ter	p.K178*	ENST00000326873	NM_000455.4	178	Aag/Tag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411010	63411010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	97	484	0	ENST00000330258.3:c.2157G>T	p.Met719Ile	p.M719I	ENST00000330258	NM_152424.3	719	atG/atT																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959232	2959232	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	111	381	0	ENST00000396946.4:c.2284G>C	p.Val762Leu	p.V762L	ENST00000396946	NM_032415.4	762	Gtg/Ctg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13940450	13940450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	180	297	0	ENST00000405192.2:c.1056G>T	p.Trp352Cys	p.W352C	ENST00000405192	NM_001163147.1	352	tgG/tgT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0072038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	202	271	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BTK	695	MSKCC	GRCh37	X	100626680	100626680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			81	85	309	0	ENST00000308731.7:c.250G>A	p.Glu84Lys	p.E84K	ENST00000308731	NM_000061.2	84	Gaa/Aaa																																																																															
WT1	7490	MSKCC	GRCh37	11	32456276	32456276	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	179	465	0	ENST00000332351.3:c.616C>G	p.Leu206Val	p.L206V	ENST00000332351	NM_024426.4	206	Ctc/Gtc																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51520084	51520084	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	92	386	0	ENST00000260433.2:c.343C>G	p.Arg115Gly	p.R115G	ENST00000260433		115	Cga/Gga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495464	56495464	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	371	572	1	ENST00000267101.3:c.3654G>T	p.Glu1218Asp	p.E1218D	ENST00000267101	NM_001982.3	1218	gaG/gaT																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42861492	42861492	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	149	367	0	ENST00000398585.3:c.378G>T	p.Leu126Phe	p.L126F	ENST00000398585	NM_001135099.1	126	ttG/ttT																																																																															
ATM	472	MSKCC	GRCh37	11	108114784	108114784	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs886039666		P-0072038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			75	164	325	0	ENST00000278616.4:c.601C>T	p.Gln201Ter	p.Q201*	ENST00000278616	NM_000051.3	201	Cag/Tag																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519480	137519480	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	247	391	0	ENST00000367739.4:c.1158G>T	p.Gln386His	p.Q386H	ENST00000367739	NM_000416.2	386	caG/caT																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637333	47637333	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	43	527	0	ENST00000233146.2:c.467A>G	p.Asp156Gly	p.D156G	ENST00000233146	NM_000251.2	156	gAt/gGt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913399		P-0072050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	126	352	0	ENST00000349496.5:c.100G>C	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Cga																																																																															
TET2	54790	MSKCC	GRCh37	4	106194006	106194006	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	124	335	0	ENST00000380013.4:c.4468G>T	p.Glu1490Ter	p.E1490*	ENST00000380013	NM_001127208.2	1490	Gaa/Taa																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519912		P-0072050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	143	192	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																															
CDH1	999	MSKCC	GRCh37	16	68853328	68853337	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTAAGGGGG	GGTAAGGGGG	-			P-0072050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	85	270	0	ENST00000261769.5:c.1711_1711+9del		p.X571_splice	ENST00000261769	NM_004360.3	571																																																																																
SMAD2	4087	MSKCC	GRCh37	18	45371729	45371729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	76	379	0	ENST00000262160.6:c.1262G>A	p.Gly421Glu	p.G421E	ENST00000262160	NM_005901.5	421	gGg/gAg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643648	52643648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	106	347	0	ENST00000394830.3:c.2248C>T	p.Leu750Phe	p.L750F	ENST00000394830	NM_018313.4	750	Ctt/Ttt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670546	134670546	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	105	367	0	ENST00000398015.3:c.457G>T	p.Gly153Ter	p.G153*	ENST00000398015	NM_004441.4	153	Gga/Tga																																																																															
HGF	3082	MSKCC	GRCh37	7	81334844	81334844	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs373545882		P-0072050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	40	277	0	ENST00000222390.5:c.1872C>A	p.Asn624Lys	p.N624K	ENST00000222390	NM_000601.4	624	aaC/aaA																																																																															
NF1	4763	MSKCC	GRCh37	17	29496978	29496992	+	frameshift_variant	Frame_Shift_Del	DEL	CAATGTGGATTGTGC	CAATGTGGATTGTGC	GG			P-0072066-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	57	153	0	ENST00000358273.4:c.549_563delinsGG	p.Ile183MetfsTer4	p.I183Mfs*4	ENST00000358273	NM_001042492.2	183	atCAATGTGGATTGTGCa/atGGa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0072069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	33	359	0				ENST00000310581	NM_198253.2																																																																																	
EP300	2033	MSKCC	GRCh37	22	41547896	41547897	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0072069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	95	409	0	ENST00000263253.7:c.2879_2880del	p.Thr960ArgfsTer9	p.T960Rfs*9	ENST00000263253	NM_001429.3	959	agCAca/agca																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18443803	18443803	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	92	330	0	ENST00000266497.5:c.776A>G	p.Tyr259Cys	p.Y259C	ENST00000266497		259	tAt/tGt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274908	41274927	+	protein_altering_variant	In_Frame_Del	DEL	GAATCTTTCAGATGCTGCAA	GAATCTTTCAGATGCTGCAA	TATTC			P-0072069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	90	393	2	ENST00000349496.5:c.1158_1177delinsTATTC	p.Arg386_Thr393delinsSerIlePro	p.R386_T393delinsSIP	ENST00000349496	NM_001904.3	386	agGAATCTTTCAGATGCTGCAAct/agTATTCct																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625197	69625197	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072077-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	186	303	0	ENST00000334134.2:c.596C>A	p.Pro199His	p.P199H	ENST00000334134	NM_005247.2	199	cCc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0072077-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	1295	264	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TET1	80312	MSKCC	GRCh37	10	70406138	70406138	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072077-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	274	421	0	ENST00000373644.4:c.3652A>G	p.Lys1218Glu	p.K1218E	ENST00000373644	NM_030625.2	1218	Aaa/Gaa																																																																															
MGA	23269	MSKCC	GRCh37	15	42005364	42005364	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0072077-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	296	438	0	ENST00000219905.7:c.3100A>T	p.Lys1034Ter	p.K1034*	ENST00000219905	NM_001164273.1	1034	Aaa/Taa																																																																															
APLNR	187	MSKCC	GRCh37	11	57003505	57003505	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T			P-0072077-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			805	255	489	0	ENST00000257254.3:c.974G>A	p.Cys325Tyr	p.C325Y	ENST00000257254		325	tGc/tAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446839	49446839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072077-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			791	297	484	0	ENST00000301067.7:c.971G>T	p.Arg324Leu	p.R324L	ENST00000301067	NM_003482.3	324	cGg/cTg																																																																															
ATM	472	MSKCC	GRCh37	11	108183193	108183193	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0072077-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	78	364	0	ENST00000278616.4:c.5974A>T	p.Lys1992Ter	p.K1992*	ENST00000278616	NM_000051.3	1992	Aaa/Taa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198257859	198257859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072077-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	165	451	0	ENST00000335508.6:c.3593G>T	p.Gly1198Val	p.G1198V	ENST00000335508	NM_012433.2	1198	gGg/gTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133249804	133249804	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072077-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	154	423	0	ENST00000320574.5:c.1419C>A	p.Tyr473Ter	p.Y473*	ENST00000320574	NM_006231.2	473	taC/taA																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625420	69625420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072077-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	194	403	0	ENST00000334134.2:c.373G>T	p.Gly125Cys	p.G125C	ENST00000334134	NM_005247.2	125	Ggc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42005350	42005350	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0072077-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	273	407	0	ENST00000219905.7:c.3086C>T	p.Ala1029Val	p.A1029V	ENST00000219905	NM_001164273.1	1029	gCa/gTa																																																																															
NF2	4771	MSKCC	GRCh37	22	30057231	30057232	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0072077-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	189	446	0	ENST00000338641.4:c.714_715del	p.Leu239GlyfsTer6	p.L239Gfs*6	ENST00000338641	NM_000268.3	238	gCC/g																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044949	47044962	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGCCTGTCTGCT	CTGGCCTGTCTGCT	-			P-0072077-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	226	240	0	ENST00000329236.7:c.2044_2057del	p.Ala682ProfsTer25	p.A682Pfs*25	ENST00000329236	NM_001204466.1	681	CTGGCCTGTCTGCTc/c																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399124	139399124	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0072077-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	155	215	0	ENST00000277541.6:c.5018+1G>T		p.X1673_splice	ENST00000277541	NM_017617.3	1673																																																																																
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072078-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	74	448	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421105	49421105	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0072078-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	80	361	0	ENST00000301067.7:c.14644G>T	p.Glu4882Ter	p.E4882*	ENST00000301067	NM_003482.3	4882	Gag/Tag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519922		P-0072087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			538	156	441	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057520005		P-0072087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	199	497	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																															
CIC	23152	MSKCC	GRCh37	19	42795269	42795269	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs34000070		P-0072087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			618	201	537	1	ENST00000575354.2:c.2353del	p.Ala785ProfsTer139	p.A785Pfs*139	ENST00000575354	NM_015125.3	783	caG/ca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254962	16254962	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			545	193	452	0	ENST00000375759.3:c.2227C>T	p.Gln743Ter	p.Q743*	ENST00000375759	NM_015001.2	743	Cag/Tag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508470	106508470	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1463222028		P-0072087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			507	200	423	0	ENST00000359195.3:c.464C>T	p.Thr155Met	p.T155M	ENST00000359195	NM_002649.2	155	aCg/aTg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440924	52440924	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0072087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			600	64	503	0	ENST00000460680.1:c.581-1G>C		p.X194_splice	ENST00000460680	NM_004656.3	194																																																																																
CXCR4	7852	MSKCC	GRCh37	2	136872936	136872936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			752	124	508	0	ENST00000241393.3:c.562C>T	p.Arg188Cys	p.R188C	ENST00000241393	NM_003467.2	188	Cgc/Tgc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933787	39933787	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748212546		P-0072087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			494	202	609	1	ENST00000378444.4:c.812C>T	p.Ser271Leu	p.S271L	ENST00000378444	NM_001123385.1	271	tCg/tTg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123171416	123171416	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0072087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			379	100	364	0	ENST00000218089.9:c.328C>T	p.Arg110Ter	p.R110*	ENST00000218089	NM_001042749.1	110	Cga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260290	16260290	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			635	194	602	0	ENST00000375759.3:c.7555C>G	p.Pro2519Ala	p.P2519A	ENST00000375759	NM_015001.2	2519	Ccc/Gcc																																																																															
KIT	3815	MSKCC	GRCh37	4	55604683	55604683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1003	155	383	0	ENST00000288135.5:c.2891C>T	p.Ala964Val	p.A964V	ENST00000288135	NM_000222.2	964	gCt/gTt																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197321	26197321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			866	249	635	1	ENST00000356476.2:c.158G>A	p.Arg53His	p.R53H	ENST00000356476		53	cGc/cAc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31422948	31422948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			609	52	334	0	ENST00000344624.3:c.3365G>A	p.Arg1122Gln	p.R1122Q	ENST00000344624		1122	cGa/cAa																																																																															
AXL	558	MSKCC	GRCh37	19	41743975	41743975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			746	103	577	0	ENST00000301178.4:c.910C>A	p.Pro304Thr	p.P304T	ENST00000301178	NM_021913.4	304	Cct/Act																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157510836	157510836	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			540	140	520	0	ENST00000346085.5:c.3611C>G	p.Ala1204Gly	p.A1204G	ENST00000346085	NM_020732.3	1204	gCa/gGa																																																																															
ATR	545	MSKCC	GRCh37	3	142275355	142275355	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			510	202	345	0	ENST00000350721.4:c.1948G>C	p.Glu650Gln	p.E650Q	ENST00000350721	NM_001184.3	650	Gag/Cag																																																																															
ETV1	2115	MSKCC	GRCh37	7	13949322	13949322	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			463	139	306	0	ENST00000405192.2:c.806G>T	p.Cys269Phe	p.C269F	ENST00000405192	NM_001163147.1	269	tGt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0072089-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			661	27	372	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0072089-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	19	217	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502302	157502302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072091-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	338	605	0	ENST00000346085.5:c.3335G>T	p.Gly1112Val	p.G1112V	ENST00000346085	NM_020732.3	1112	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398285	+	missense_variant	Missense_Mutation	ONP	CCACC	CCACC	TCACA			P-0072134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	16	263	0	ENST00000256078.4:c.34_38delinsTGTGA	p.Gly12_Gly13delinsCysAsp	p.G12_G13delinsCD	ENST00000256078	NM_033360.2	12	GGTGGc/TGTGAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0072137-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	45	249	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830264	72830264	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752913773		P-0072149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	114	608	0	ENST00000268489.5:c.6317C>T	p.Pro2106Leu	p.P2106L	ENST00000268489	NM_006885.3	2106	cCg/cTg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38960538	38960538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	111	440	0	ENST00000357387.3:c.1813G>A	p.Gly605Ser	p.G605S	ENST00000357387	NM_152756.3	605	Ggt/Agt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0072164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	81	531	0	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857481	9857481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	43	735	0	ENST00000330684.3:c.3920C>T	p.Pro1307Leu	p.P1307L	ENST00000330684	NM_001134407.1	1307	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0072164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			94	99	628	0	ENST00000269305.4:c.376-1G>C		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
MUTYH	4595	MSKCC	GRCh37	1	45797459	45797459	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	31	857	0	ENST00000372115.3:c.1018G>C	p.Gly340Arg	p.G340R	ENST00000372115	NM_001048171.1	340	Gga/Cga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65311248	65311514	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGGTAAGGACATCGCTTTTCCGGTGCATGAAGAGATCCAGAGGACCCCCTTCCACAAACTCTTCCACCATGATATCTGTAGGCATAAAAATAGCCATGTCTGGAACCTGGTCTGTGGCACGGTCCTCTCCTTCATCCCCTTACGACAGTCCACTTCAGTGGACACTACTCGGCCTCAGAGTACACAGATATCCTTGGGGGGTGCAATGGTGCAGGGGCTTCAGAGCTGGAAAGGCCAAGTTCAACCCCAAGCTCTTCTTCTAAACG	GTGGTAAGGACATCGCTTTTCCGGTGCATGAAGAGATCCAGAGGACCCCCTTCCACAAACTCTTCCACCATGATATCTGTAGGCATAAAAATAGCCATGTCTGGAACCTGGTCTGTGGCACGGTCCTCTCCTTCATCCCCTTACGACAGTCCACTTCAGTGGACACTACTCGGCCTCAGAGTACACAGATATCCTTGGGGGGTGCAATGGTGCAGGGGCTTCAGAGCTGGAAAGGCCAAGTTCAACCCCAAGCTCTTCTTCTAAACG	-			P-0072164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	54	655	0	ENST00000342505.4:c.1988-191_2063del		p.X663_splice	ENST00000342505	NM_002227.2	663																																																																																
BRCA2	675	MSKCC	GRCh37	13	32899248	32899248	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	46	221	0	ENST00000380152.3:c.352del	p.Arg118AlafsTer3	p.R118Afs*3	ENST00000380152		118	Cgc/gc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061184	38061185	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CG	CG	-			P-0072164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	206	713	0	ENST00000250448.2:c.804_805del	p.Cys268Ter	p.C268*	ENST00000250448	NM_004496.3	268	tgCGag/tgag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423519	88423519	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	84	596	0	ENST00000360948.2:c.2316C>G	p.Phe772Leu	p.F772L	ENST00000360948	NM_001012338.2	772	ttC/ttG																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244209	5244209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	20	746	0	ENST00000357368.4:c.1273G>A	p.Ala425Thr	p.A425T	ENST00000357368	NM_002850.3	425	Gcc/Acc																																																																															
CALR	811	MSKCC	GRCh37	19	13051254	13051261	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCAAGC	CTCCAAGC	-			P-0072164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	108	806	0	ENST00000316448.5:c.692_699del	p.Ser231Ter	p.S231*	ENST00000316448	NM_004343.3	230	gaCTCCAAGCct/gact																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141068	55141068	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	43	598	0	ENST00000257290.5:c.1714T>C	p.Tyr572His	p.Y572H	ENST00000257290	NM_006206.4	572	Tat/Cat																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390626	139390626	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	22	781	0	ENST00000277541.6:c.7565G>C	p.Ser2522Thr	p.S2522T	ENST00000277541	NM_017617.3	2522	aGc/aCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0072167-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	104	432	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68301812	68301812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072167-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	43	366	0	ENST00000487270.1:c.214G>A	p.Ala72Thr	p.A72T	ENST00000487270	NM_133509.3	72	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0072177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	66	539	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4123815	4123815	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0072177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	39	453	0	ENST00000262948.5:c.58G>T	p.Glu20Ter	p.E20*	ENST00000262948	NM_030662.3	20	Gag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	41991294	41991294	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	50	440	0	ENST00000219905.7:c.2125G>T	p.Glu709Ter	p.E709*	ENST00000219905	NM_001164273.1	709	Gaa/Taa																																																																															
KDR	3791	MSKCC	GRCh37	4	55976929	55976929	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs767143286		P-0072177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	38	325	0	ENST00000263923.4:c.983C>A	p.Pro328His	p.P328H	ENST00000263923	NM_002253.2	328	cCt/cAt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528579	89528579	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	34	390	0	ENST00000336596.2:c.2879G>T	p.Gly960Val	p.G960V	ENST00000336596	NM_005233.5	960	gGg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0072177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	90	352	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			850	49	853	0	ENST00000244661.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000244661	NM_003537.3	106	Gag/Cag																																																																															
SMO	6608	MSKCC	GRCh37	7	128846110	128846110	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	33	622	0	ENST00000249373.3:c.1040G>C	p.Gly347Ala	p.G347A	ENST00000249373	NM_005631.4	347	gGc/gCc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670922	30670922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	86	621	0	ENST00000376406.3:c.5824G>T	p.Gly1942Trp	p.G1942W	ENST00000376406	NM_014641.2	1942	Ggg/Tgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170314	32170314	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	75	622	0	ENST00000375023.3:c.3294C>A	p.His1098Gln	p.H1098Q	ENST00000375023	NM_004557.3	1098	caC/caA																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665332	138665332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	82	571	0	ENST00000330315.3:c.233C>A	p.Ser78Tyr	p.S78Y	ENST00000330315	NM_023067.3	78	tCc/tAc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225360576	225360576	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0072177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	39	261	0	ENST00000264414.4:c.1815del	p.Phe605LeufsTer49	p.F605Lfs*49	ENST00000264414	NM_003590.4	605	ttT/tt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73345074	73345074	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0072177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	10	213	0	ENST00000377767.4:c.1723del	p.Thr575ArgfsTer14	p.T575Rfs*14	ENST00000377767	NM_014953.3	575	Acg/cg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439151	52439151	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	30	566	0	ENST00000460680.1:c.1091A>T	p.His364Leu	p.H364L	ENST00000460680	NM_004656.3	364	cAc/cTc																																																																															
ALK	238	MSKCC	GRCh37	2	29448362	29448362	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	98	798	0	ENST00000389048.3:c.3137C>G	p.Ala1046Gly	p.A1046G	ENST00000389048	NM_004304.4	1046	gCc/gGc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456786	32456786	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	26	560	0	ENST00000332351.3:c.106C>A	p.Pro36Thr	p.P36T	ENST00000332351	NM_024426.4	36	Ccg/Acg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190718758	190718758	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	17	170	0	ENST00000441310.2:c.916G>T	p.Val306Phe	p.V306F	ENST00000441310	NM_000534.4	306	Gtt/Ttt																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428254	33428254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	142	588	0	ENST00000335858.7:c.533G>T	p.Arg178Leu	p.R178L	ENST00000335858	NM_133629.2	178	cGg/cTg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143114315	143114315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	63	413	0	ENST00000262992.4:c.1106C>T	p.Pro369Leu	p.P369L	ENST00000262992	NM_001101669.1	369	cCa/cTa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970802	79970802	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0072177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	20	209	1	ENST00000265081.6:c.1028A>G	p.Asp343Gly	p.D343G	ENST00000265081	NM_002439.4	343	gAt/gGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097783	27097783	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	98	613	0	ENST00000324856.7:c.3372G>C	p.Lys1124Asn	p.K1124N	ENST00000324856	NM_006015.4	1124	aaG/aaC																																																																															
MED12	9968	MSKCC	GRCh37	X	70349532	70349532	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0072177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	55	567	0	ENST00000374080.3:c.3694G>T	p.Asp1232Tyr	p.D1232Y	ENST00000374080		1232	Gat/Tat																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933886	39933886	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	87	625	0	ENST00000378444.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000378444	NM_001123385.1	238	tGc/tTc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483888	88483888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	24	458	0	ENST00000360948.2:c.1682G>T	p.Ser561Ile	p.S561I	ENST00000360948	NM_001012338.2	561	aGc/aTc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123224582	123224582	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	23	488	0	ENST00000218089.9:c.3435G>T	p.Gln1145His	p.Q1145H	ENST00000218089	NM_001042749.1	1145	caG/caT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0072180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	23	339	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181431070	181431070	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	10	532	0	ENST00000325404.1:c.922A>G	p.Ile308Val	p.I308V	ENST00000325404	NM_003106.3	308	Att/Gtt																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61323103	61323103	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	28	659	0	ENST00000283752.5:c.961C>A	p.Arg321Ser	p.R321S	ENST00000283752	NM_006919.2	321	Cgc/Agc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16263970	16263970	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	100	738	0	ENST00000375759.3:c.10339C>G	p.Leu3447Val	p.L3447V	ENST00000375759	NM_015001.2	3447	Ctt/Gtt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101546	27101546	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	158	631	0	ENST00000324856.7:c.4828G>T	p.Gly1610Trp	p.G1610W	ENST00000324856	NM_006015.4	1610	Ggg/Tgg																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699405	117699405	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	150	557	0	ENST00000369458.3:c.236T>A	p.Leu79Ter	p.L79*	ENST00000369458	NM_024626.3	79	tTg/tAg																																																																															
RB1	5925	MSKCC	GRCh37	13	48954299	48954299	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T	rs1395304450		P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	163	227	0	ENST00000267163.4:c.1422-2A>T		p.X474_splice	ENST00000267163	NM_000321.2	474																																																																																
TSC2	7249	MSKCC	GRCh37	16	2107113	2107113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45502703		P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	120	509	0	ENST00000219476.3:c.782G>A	p.Arg261Gln	p.R261Q	ENST00000219476	NM_000548.3	261	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587781525		P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	194	586	0	ENST00000269305.4:c.842A>G	p.Asp281Gly	p.D281G	ENST00000269305	NM_001126112.2	281	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876659802		P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	191	567	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	274	732	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101020	41101020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	128	656	0	ENST00000373198.4:c.1336C>A	p.His446Asn	p.H446N	ENST00000373198	NM_133170.3	446	Cac/Aac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259034	89259034	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	184	416	0	ENST00000336596.2:c.178G>A	p.Glu60Lys	p.E60K	ENST00000336596	NM_005233.5	60	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	66	246	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94068025	94068025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	57	390	0	ENST00000369303.4:c.937G>A	p.Glu313Lys	p.E313K	ENST00000369303	NM_004440.3	313	Gaa/Aaa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710892	117710892	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	36	564	0	ENST00000368508.3:c.1380C>G	p.Ile460Met	p.I460M	ENST00000368508	NM_002944.2	460	atC/atG																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521514	8521514	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	100	476	0	ENST00000356435.5:c.724C>A	p.Pro242Thr	p.P242T	ENST00000356435		242	Ccc/Acc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393429	139393429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	165	685	0	ENST00000277541.6:c.6102G>T	p.Trp2034Cys	p.W2034C	ENST00000277541	NM_017617.3	2034	tgG/tgT																																																																															
ARAF	369	MSKCC	GRCh37	X	47426126	47426126	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	10	339	0	ENST00000377045.4:c.646C>G	p.Pro216Ala	p.P216A	ENST00000377045	NM_001654.4	216	Ccc/Gcc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412510	63412510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			81	221	282	0	ENST00000330258.3:c.657G>T	p.Glu219Asp	p.E219D	ENST00000330258	NM_152424.3	219	gaG/gaT																																																																															
AR	367	MSKCC	GRCh37	X	66931447	66931447	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	268	330	0	ENST00000374690.3:c.2089T>A	p.Ser697Thr	p.S697T	ENST00000374690	NM_000044.3	697	Tcc/Acc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258531	16258531	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	146	696	0	ENST00000375759.3:c.5796G>C	p.Lys1932Asn	p.K1932N	ENST00000375759	NM_015001.2	1932	aaG/aaC																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27022959	27022959	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	54	532	0	ENST00000324856.7:c.65C>A	p.Ser22Ter	p.S22*	ENST00000324856	NM_006015.4	22	tCg/tAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023658	27023658	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	59	558	0	ENST00000324856.7:c.764C>G	p.Ser255Cys	p.S255C	ENST00000324856	NM_006015.4	255	tCc/tGc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36934857	36934857	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	127	467	0	ENST00000361632.4:c.1476G>T	p.Glu492Asp	p.E492D	ENST00000361632		492	gaG/gaT																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466541	120466541	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs769513920		P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	169	607	0	ENST00000256646.2:c.4578G>T	p.Glu1526Asp	p.E1526D	ENST00000256646	NM_024408.3	1526	gaG/gaT																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156841493	156841493	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	153	765	0	ENST00000524377.1:c.796T>A	p.Trp266Arg	p.W266R	ENST00000524377	NM_002529.3	266	Tgg/Agg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8105958	8105958	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	122	531	0	ENST00000346208.3:c.779-1G>A		p.X260_splice	ENST00000346208		260																																																																																
ARID5B	84159	MSKCC	GRCh37	10	63851458	63851458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	120	605	0	ENST00000279873.7:c.2236G>C	p.Val746Leu	p.V746L	ENST00000279873	NM_032199.2	746	Gtc/Ctc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416206	416206	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	292	576	0	ENST00000399788.2:c.3980G>T	p.Ser1327Ile	p.S1327I	ENST00000399788	NM_001042603.1	1327	aGt/aTt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18446864	18446864	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	154	277	0	ENST00000266497.5:c.949G>T	p.Glu317Ter	p.E317*	ENST00000266497		317	Gaa/Taa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562418	95562418	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	142	600	0	ENST00000343455.3:c.4839A>T	p.Gln1613His	p.Q1613H	ENST00000343455	NM_177438.2	1613	caA/caT																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40685763	40685763	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	119	495	0	ENST00000249776.8:c.916G>T	p.Ala306Ser	p.A306S	ENST00000249776	NM_033286.3	306	Gcc/Tcc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66782079	66782079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	66	441	0	ENST00000307102.5:c.1046G>A	p.Arg349Lys	p.R349K	ENST00000307102	NM_002755.3	349	aGa/aAa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778378	3778378	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	167	770	0	ENST00000262367.5:c.6670G>T	p.Gly2224Cys	p.G2224C	ENST00000262367	NM_004380.2	2224	Ggc/Tgc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23634420	23634420	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	99	443	0	ENST00000261584.4:c.2866G>C	p.Glu956Gln	p.E956Q	ENST00000261584	NM_024675.3	956	Gaa/Caa																																																																															
NF1	4763	MSKCC	GRCh37	17	29553653	29553653	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	64	586	0	ENST00000358273.4:c.2202C>G	p.Asn734Lys	p.N734K	ENST00000358273	NM_001042492.2	734	aaC/aaG																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59934498	59934498	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	114	450	0	ENST00000259008.2:c.300G>T	p.Met100Ile	p.M100I	ENST00000259008	NM_032043.2	100	atG/atT																																																																															
YES1	7525	MSKCC	GRCh37	18	746013	746013	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	45	309	0	ENST00000314574.4:c.509G>C	p.Arg170Thr	p.R170T	ENST00000314574	NM_005433.3	170	aGa/aCa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222491	2222491	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	129	538	0	ENST00000398665.3:c.3323G>T	p.Arg1108Leu	p.R1108L	ENST00000398665	NM_032482.2	1108	cGa/cTa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244137	5244137	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	141	696	0	ENST00000357368.4:c.1345G>C	p.Glu449Gln	p.E449Q	ENST00000357368	NM_002850.3	449	Gag/Cag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5286136	5286136	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	145	480	0	ENST00000357368.4:c.16G>T	p.Gly6Cys	p.G6C	ENST00000357368	NM_002850.3	6	Ggc/Tgc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144163	11144163	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	147	640	0	ENST00000344626.4:c.3744G>T	p.Gln1248His	p.Q1248H	ENST00000344626	NM_003072.3	1248	caG/caT																																																																															
ALK	238	MSKCC	GRCh37	2	29446233	29446233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	152	599	0	ENST00000389048.3:c.3334C>A	p.Pro1112Thr	p.P1112T	ENST00000389048	NM_004304.4	1112	Ccg/Acg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251578	212251578	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	106	544	0	ENST00000342788.4:c.3481G>C	p.Glu1161Gln	p.E1161Q	ENST00000342788	NM_005235.2	1161	Gaa/Caa																																																																															
INHA	3623	MSKCC	GRCh37	2	220439489	220439489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	111	639	0	ENST00000243786.2:c.342G>T	p.Met114Ile	p.M114I	ENST00000243786	NM_002191.3	114	atG/atT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40757458	40757458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	117	519	0	ENST00000373198.4:c.2840G>T	p.Arg947Leu	p.R947L	ENST00000373198	NM_133170.3	947	cGg/cTg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62294230	62294230	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	A	A	T			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			752	151	615	0	ENST00000482936.1:c.526A>T	p.Asn176Tyr	p.N176Y	ENST00000482936		176	Aac/Tac																																																																															
EP300	2033	MSKCC	GRCh37	22	41533742	41533742	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	95	485	0	ENST00000263253.7:c.1708C>G	p.Gln570Glu	p.Q570E	ENST00000263253	NM_001429.3	570	Cag/Gag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47139528	47139528	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	163	507	0	ENST00000409792.3:c.5059G>T	p.Gly1687Cys	p.G1687C	ENST00000409792	NM_014159.6	1687	Ggt/Tgt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445061	89445061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	145	528	0	ENST00000336596.2:c.1381G>A	p.Glu461Lys	p.E461K	ENST00000336596	NM_005233.5	461	Gaa/Aaa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480333	89480333	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	214	428	0	ENST00000336596.2:c.2170G>T	p.Val724Leu	p.V724L	ENST00000336596	NM_005233.5	724	Gtg/Ttg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911445	134911445	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	225	562	0	ENST00000398015.3:c.1910G>T	p.Arg637Leu	p.R637L	ENST00000398015	NM_004441.4	637	cGt/cTt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960122	134960122	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	232	557	0	ENST00000398015.3:c.2479G>T	p.Asp827Tyr	p.D827Y	ENST00000398015	NM_004441.4	827	Gat/Tat																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138423299	138423299	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	84	287	0	ENST00000289153.2:c.1567A>T	p.Ser523Cys	p.S523C	ENST00000289153	NM_006219.2	523	Agt/Tgt																																																																															
ATR	545	MSKCC	GRCh37	3	142185209	142185209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	82	422	0	ENST00000350721.4:c.6854C>T	p.Pro2285Leu	p.P2285L	ENST00000350721	NM_001184.3	2285	cCa/cTa																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84384762	84384762	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	72	205	0	ENST00000321945.7:c.682-1G>A		p.X228_splice	ENST00000321945	NM_139076.2	228																																																																																
FAT1	2195	MSKCC	GRCh37	4	187510303	187510303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	32	561	0	ENST00000441802.2:c.13210G>A	p.Glu4404Lys	p.E4404K	ENST00000441802	NM_005245.3	4404	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187558022	187558022	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs746168456		P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	87	528	0	ENST00000441802.2:c.3689G>C	p.Arg1230Thr	p.R1230T	ENST00000441802	NM_005245.3	1230	aGa/aCa																																																																															
SDHA	6389	MSKCC	GRCh37	5	218475	218475	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780064103		P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1139	85	549	0	ENST00000264932.6:c.5C>T	p.Ser2Leu	p.S2L	ENST00000264932	NM_004168.2	2	tCg/tTg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871311	35871311	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	87	353	0	ENST00000303115.3:c.533G>T	p.Trp178Leu	p.W178L	ENST00000303115	NM_002185.3	178	tGg/tTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637558	176637558	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs770263945		P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	60	572	0	ENST00000439151.2:c.2158G>C	p.Glu720Gln	p.E720Q	ENST00000439151	NM_022455.4	720	Gag/Cag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176687127	176687127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	31	459	0	ENST00000439151.2:c.5104C>T	p.His1702Tyr	p.H1702Y	ENST00000439151	NM_022455.4	1702	Cat/Tat																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721333	176721333	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	159	636	0	ENST00000439151.2:c.6964G>T	p.Val2322Leu	p.V2322L	ENST00000439151	NM_022455.4	2322	Gtg/Ttg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679858	30679858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	126	673	0	ENST00000376406.3:c.1861C>T	p.His621Tyr	p.H621Y	ENST00000376406	NM_014641.2	621	Cat/Tat																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552936	106552936	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	180	726	0	ENST00000369096.4:c.901A>G	p.Ile301Val	p.I301V	ENST00000369096	NM_001198.3	301	Atc/Gtc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987397	2987397	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1403650501		P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	116	505	0	ENST00000396946.4:c.32A>G	p.Tyr11Cys	p.Y11C	ENST00000396946	NM_032415.4	11	tAc/tGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853293	151853293	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	99	498	0	ENST00000262189.6:c.11809G>C	p.Glu3937Gln	p.E3937Q	ENST00000262189	NM_170606.2	3937	Gaa/Caa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151893073	151893073	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	57	318	0	ENST00000262189.6:c.4297G>C	p.Asp1433His	p.D1433H	ENST00000262189	NM_170606.2	1433	Gat/Cat																																																																															
JAK2	3717	MSKCC	GRCh37	9	5022124	5022124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	62	451	0	ENST00000381652.3:c.137C>G	p.Ser46Cys	p.S46C	ENST00000381652	NM_004972.3	46	tCc/tGc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465525	8465525	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	106	521	1	ENST00000356435.5:c.3655C>A	p.Leu1219Ile	p.L1219I	ENST00000356435		1219	Ctc/Atc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814691	139814691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	98	576	0	ENST00000247668.2:c.684G>T	p.Glu228Asp	p.E228D	ENST00000247668	NM_021138.3	228	gaG/gaT																																																																															
AR	367	MSKCC	GRCh37	X	66943648	66943648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	255	288	0	ENST00000374690.3:c.2728G>T	p.Gly910Trp	p.G910W	ENST00000374690	NM_000044.3	910	Ggg/Tgg																																																																															
MED12	9968	MSKCC	GRCh37	X	70340825	70340825	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	62	242	0	ENST00000374080.3:c.558G>C	p.Trp186Cys	p.W186C	ENST00000374080		186	tgG/tgC																																																																															
MED12	9968	MSKCC	GRCh37	X	70343561	70343561	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	125	267	0	ENST00000374080.3:c.1735C>G	p.Pro579Ala	p.P579A	ENST00000374080		579	Ccc/Gcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0072190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			23	27	287	2	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0072190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	85	611	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913396		P-0072190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	365	549	1	ENST00000349496.5:c.95A>G	p.Asp32Gly	p.D32G	ENST00000349496	NM_001904.3	32	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs28934576		P-0072190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	384	588	1	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168969	32168969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs567483221		P-0072190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	603	693	0	ENST00000375023.3:c.4064G>A	p.Arg1355Gln	p.R1355Q	ENST00000375023	NM_004557.3	1355	cGg/cAg																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538906	23538906	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	514	544	0	ENST00000380871.4:c.533A>G	p.Lys178Arg	p.K178R	ENST00000380871	NM_006167.3	178	aAg/aGg																																																																															
POLE	5426	MSKCC	GRCh37	12	133201562	133201562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766291093		P-0072195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	57	409	0	ENST00000320574.5:c.6676G>A	p.Gly2226Arg	p.G2226R	ENST00000320574	NM_006231.2	2226	Ggg/Agg																																																																															
MGA	23269	MSKCC	GRCh37	15	41988679	41988679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	68	366	0	ENST00000219905.7:c.1471C>T	p.Leu491Phe	p.L491F	ENST00000219905	NM_001164273.1	491	Ctt/Ttt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943400	17943400	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200198236		P-0072195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	83	396	0	ENST00000458235.1:c.2608C>T	p.Arg870Trp	p.R870W	ENST00000458235	NM_000215.3	870	Cgg/Tgg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486247	8486247	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139171396		P-0072198-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	24	440	0	ENST00000356435.5:c.2570G>A	p.Arg857His	p.R857H	ENST00000356435		857	cGt/cAt																																																																															
ATM	472	MSKCC	GRCh37	11	108235935	108235935	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs770641163		P-0072198-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	179	487	1	ENST00000278616.4:c.8977C>T	p.Arg2993Ter	p.R2993*	ENST00000278616	NM_000051.3	2993	Cga/Tga																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40678574	40678574	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1291020860		P-0072198-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	169	408	0	ENST00000249776.8:c.316C>T	p.Arg106Trp	p.R106W	ENST00000249776	NM_033286.3	106	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0072198-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	144	230	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RAF1	5894	MSKCC	GRCh37	3	12641893	12641893	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147453956		P-0072198-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	173	424	0	ENST00000251849.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000251849	NM_002880.3	286	Gaa/Aaa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557554	21557554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072198-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	47	486	0	ENST00000382592.4:c.2291C>A	p.Pro764His	p.P764H	ENST00000382592	NM_014572.2	764	cCt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573504	48573504	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072198-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	137	421	0	ENST00000342988.3:c.89del	p.Gly30GlufsTer15	p.G30Efs*15	ENST00000342988	NM_005359.5	30	Gga/ga																																																																															
EP300	2033	MSKCC	GRCh37	22	41564834	41564834	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072198-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	201	448	0	ENST00000263253.7:c.4135del	p.Gln1379LysfsTer31	p.Q1379Kfs*31	ENST00000263253	NM_001429.3	1379	Caa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0072201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	467	388	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	459813	459813	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779410726		P-0072201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	252	313	0	ENST00000399788.2:c.1282C>T	p.Arg428Trp	p.R428W	ENST00000399788	NM_001042603.1	428	Cgg/Tgg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747924	41747924	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	164	388	0	ENST00000226382.2:c.845C>G	p.Ser282Cys	p.S282C	ENST00000226382	NM_003924.3	282	tCc/tGc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098947	178098952	+	inframe_deletion	In_Frame_Del	DEL	CTTACT	CTTACT	-			P-0072201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	341	309	0	ENST00000397062.3:c.93_98del	p.Val32_Ser33del	p.V32_S33del	ENST00000397062	NM_006164.4	31	ggAGTAAGt/ggt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680518	30680518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	58	401	0	ENST00000376406.3:c.1201A>T	p.Asn401Tyr	p.N401Y	ENST00000376406	NM_014641.2	401	Aac/Tac																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39074475	39074475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	67	266	0	ENST00000357387.3:c.5C>T	p.Ala2Val	p.A2V	ENST00000357387	NM_152756.3	2	gCg/gTg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287983	33287983	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	64	435	0	ENST00000374542.5:c.1270T>C	p.Ser424Pro	p.S424P	ENST00000374542	NM_001141970.1	424	Tcc/Ccc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778720		P-0072231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	8	623	2	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929505	44929505	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			54	40	286	0	ENST00000377967.4:c.2605del	p.Asp869IlefsTer29	p.D869Ifs*29	ENST00000377967	NM_021140.2	869	Gat/at																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060797	38060797	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	29	813	0	ENST00000250448.2:c.1192del	p.His398ThrfsTer42	p.H398Tfs*42	ENST00000250448	NM_004496.3	398	Cac/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0072232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	253	596	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849800	156849800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41358549		P-0072232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	86	516	0	ENST00000524377.1:c.2056C>T	p.Arg686Cys	p.R686C	ENST00000524377	NM_002529.3	686	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604770	48604770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0072232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	111	593	0	ENST00000342988.3:c.1594del	p.Ala532ProfsTer5	p.A532Pfs*5	ENST00000342988	NM_005359.5	531	cGg/cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0072232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	81	307	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520009	106520009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	26	356	0	ENST00000359195.3:c.2437C>T	p.Leu813Phe	p.L813F	ENST00000359195	NM_002649.2	813	Ctt/Ttt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106515198	106515198	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146675267		P-0072233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	53	382	0	ENST00000359195.3:c.2341G>A	p.Glu781Lys	p.E781K	ENST00000359195	NM_002649.2	781	Gaa/Aaa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3795329	3795329	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371780176		P-0072233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			761	41	474	1	ENST00000262367.5:c.3863G>A	p.Arg1288Gln	p.R1288Q	ENST00000262367	NM_004380.2	1288	cGg/cAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120062	70120062	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	498	497	0	ENST00000245479.2:c.1067del	p.Pro356ArgfsTer27	p.P356Rfs*27	ENST00000245479	NM_000346.3	355	gCc/gc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680697	30680697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	249	555	0	ENST00000376406.3:c.1022C>T	p.Thr341Ile	p.T341I	ENST00000376406	NM_014641.2	341	aCc/aTc																																																																															
ATR	545	MSKCC	GRCh37	3	142254017	142254017	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	62	341	0	ENST00000350721.4:c.3850A>T	p.Thr1284Ser	p.T1284S	ENST00000350721	NM_001184.3	1284	Act/Tct																																																																															
POLE	5426	MSKCC	GRCh37	12	133256577	133256577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	133	461	1	ENST00000320574.5:c.386C>T	p.Ala129Val	p.A129V	ENST00000320574	NM_006231.2	129	gCa/gTa																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119595238	119595381	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTAAAAAAAAATCTAACTCACCTTAGTCCAAGGATGTGCCTTAATTTGAGGGAATTTAAATTCTGTGTAGTTTGGGTTCATTTCTCTGATTTGCTCCCTTGTTGGAGTTCCCAGGACCTAGAAAGAAAGCAAGTTATTGCCAT	CTTAAAAAAAAATCTAACTCACCTTAGTCCAAGGATGTGCCTTAATTTGAGGGAATTTAAATTCTGTGTAGTTTGGGTTCATTTCTCTGATTTGCTCCCTTGTTGGAGTTCCCAGGACCTAGAAAGAAAGCAAGTTATTGCCAT	-			P-0072233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	36	219	0	ENST00000316626.5:c.814-26_909+22del		p.X272_splice	ENST00000316626		272																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151849990	151850102	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTCGGACGTGAAGAAGGTCGGAAAATGCAGCCACAACACTGCTAATGTTCTAAAACCAAATGCAAATGCTGTATTATTCACCCAGAAGGCAACAGTGAACCACTGAAGAAAA	ATTCGGACGTGAAGAAGGTCGGAAAATGCAGCCACAACACTGCTAATGTTCTAAAACCAAATGCAAATGCTGTATTATTCACCCAGAAGGCAACAGTGAACCACTGAAGAAAA	-			P-0072233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	73	464	0	ENST00000262189.6:c.12277-63_12326del		p.X4093_splice	ENST00000262189	NM_170606.2	4093																																																																																
NSD1	64324	MSKCC	GRCh37	5	176722225	176722225	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			884	329	634	0	ENST00000439151.2:c.7856C>A	p.Thr2619Asn	p.T2619N	ENST00000439151	NM_022455.4	2619	aCc/aAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0072267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	91	607	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0072267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	120	517	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374664	118374664	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	112	585	0	ENST00000534358.1:c.8057A>G	p.Asn2686Ser	p.N2686S	ENST00000534358	NM_005933.3	2686	aAc/aGc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123247560	123247560	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0072267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	107	360	0	ENST00000358487.5:c.1931A>C	p.Asp644Ala	p.D644A	ENST00000358487	NM_000141.4	644	gAc/gCc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426121	47426121	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519786		P-0072268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	17	370	0	ENST00000377045.4:c.641C>T	p.Ser214Phe	p.S214F	ENST00000377045	NM_001654.4	214	tCc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0072268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	19	198	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193218918	193218918	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	28	307	0	ENST00000367435.3:c.1476G>T	p.Trp492Cys	p.W492C	ENST00000367435	NM_024529.4	492	tgG/tgT																																																																															
ATRX	546	MSKCC	GRCh37	X	77041481	77041481	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	15	140	0	ENST00000373344.5:c.7G>T	p.Ala3Ser	p.A3S	ENST00000373344	NM_000489.3	3	Gct/Tct																																																																															
ATR	545	MSKCC	GRCh37	3	142243042	142243042	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0072268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	26	170	0	ENST00000350721.4:c.3946-1G>A		p.X1316_splice	ENST00000350721	NM_001184.3	1316																																																																																
HGF	3082	MSKCC	GRCh37	7	81332063	81332063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	22	238	0	ENST00000222390.5:c.2021G>T	p.Gly674Val	p.G674V	ENST00000222390	NM_000601.4	674	gGt/gTt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0072287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	218	453	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115955	8115956	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0072287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	271	605	0	ENST00000346208.3:c.1305dup	p.Ser436LeufsTer71	p.S436Lfs*71	ENST00000346208		434	cac/caCc																																																																															
SYK	6850	MSKCC	GRCh37	9	93650843	93650843	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748067972		P-0072287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	115	511	0	ENST00000375746.1:c.1769G>A	p.Arg590Gln	p.R590Q	ENST00000375746	NM_001174167.1	590	cGg/cAg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523078	25523078	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	69	544	0	ENST00000264709.3:c.107A>T	p.Glu36Val	p.E36V	ENST00000264709	NM_175629.2	36	gAg/gTg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532606	63532606	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1771	241	633	0	ENST00000307078.5:c.1973G>C	p.Ser658Thr	p.S658T	ENST00000307078	NM_004655.3	658	aGc/aCc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670382	134670382	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	74	516	0	ENST00000398015.3:c.293G>T	p.Ser98Ile	p.S98I	ENST00000398015	NM_004441.4	98	aGc/aTc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781815	3781815	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0072287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	89	588	0	ENST00000262367.5:c.4852T>C	p.Ser1618Pro	p.S1618P	ENST00000262367	NM_004380.2	1618	Tcc/Ccc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176687031	176687031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1164947711		P-0072288-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	85	486	3	ENST00000439151.2:c.5008G>A	p.Ala1670Thr	p.A1670T	ENST00000439151	NM_022455.4	1670	Gcc/Acc																																																																															
MED12	9968	MSKCC	GRCh37	X	70349257	70349258	+	missense_variant	Missense_Mutation	DNP	TC	TC	GT			P-0072288-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	80	312	0	ENST00000374080.3:c.3669_3670delinsGT	p.Leu1224Phe	p.L1224F	ENST00000374080		1223	gtTCtc/gtGTtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0072295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	90	589	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509436	106509436	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200175951		P-0072295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	91	490	1	ENST00000359195.3:c.1430G>A	p.Arg477His	p.R477H	ENST00000359195	NM_002649.2	477	cGt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549883	187549883	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs186220887		P-0072295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	56	298	0	ENST00000441802.2:c.4358G>A	p.Arg1453His	p.R1453H	ENST00000441802	NM_005245.3	1453	cGt/cAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0072295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	76	439	0	ENST00000304494.5:c.151-2A>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	10032357	10032357	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	70	512	0	ENST00000330684.3:c.466A>T	p.Thr156Ser	p.T156S	ENST00000330684	NM_001134407.1	156	Acg/Tcg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18439817	18439817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	47	312	0	ENST00000266497.5:c.715C>A	p.Gln239Lys	p.Q239K	ENST00000266497		239	Caa/Aaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424185	49424185	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0072295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	48	278	0	ENST00000301067.7:c.13877T>G	p.Leu4626Arg	p.L4626R	ENST00000301067	NM_003482.3	4626	cTg/cGg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56866205	56866205	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0072295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	90	404	0	ENST00000308159.5:c.1252-2A>C		p.X418_splice	ENST00000308159	NM_014669.4	418																																																																																
SOX17	64321	MSKCC	GRCh37	8	55371631	55371631	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0072295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	63	403	0	ENST00000297316.4:c.321G>C	p.Lys107Asn	p.K107N	ENST00000297316	NM_022454.3	107	aaG/aaC																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020757	26020757	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	89	499	0	ENST00000357647.3:c.40G>T	p.Gly14Cys	p.G14C	ENST00000357647	NM_003529.2	14	Ggc/Tgc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99472883	99472883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0072295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	38	428	0	ENST00000268035.6:c.2879G>A	p.Arg960Lys	p.R960K	ENST00000268035	NM_000875.3	960	aGa/aAa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198273186	198273186	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	80	409	0	ENST00000335508.6:c.1024C>A	p.Pro342Thr	p.P342T	ENST00000335508	NM_012433.2	342	Cca/Aca																																																																															
WT1	7490	MSKCC	GRCh37	11	32456552	32456559	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCGCCC	AAGCGCCC	-			P-0072295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	23	321	0	ENST00000332351.3:c.333_340del	p.Ala113LeufsTer83	p.A113Lfs*83	ENST00000332351	NM_024426.4	111	ccGGGCGCTTcg/cccg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106512980	106512980	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0072295-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	55	436	0	ENST00000359195.3:c.1996-2A>T		p.X666_splice	ENST00000359195	NM_002649.2	666																																																																																
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0072303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	185	576	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0072303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	179	298	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424841	47424841	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	96	559	0	ENST00000404338.3:c.2909C>G	p.Ser970Cys	p.S970C	ENST00000404338	NM_004491.4	970	tCc/tGc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707805	176707805	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0072303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	230	498	0	ENST00000439151.2:c.5862G>T	p.Trp1954Cys	p.W1954C	ENST00000439151	NM_022455.4	1954	tgG/tgT																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528581	89528581	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0072303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	109	357	0	ENST00000336596.2:c.2882del	p.Pro961HisfsTer12	p.P961Hfs*12	ENST00000336596	NM_005233.5	961	Cca/ca																																																																															
HGF	3082	MSKCC	GRCh37	7	81334810	81334810	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	135	396	0	ENST00000222390.5:c.1906A>G	p.Ile636Val	p.I636V	ENST00000222390	NM_000601.4	636	Ata/Gta																																																																															
DIS3	22894	MSKCC	GRCh37	13	73335604	73335604	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	49	346	0	ENST00000377767.4:c.2567G>T	p.Arg856Ile	p.R856I	ENST00000377767	NM_014953.3	856	aGa/aTa																																																																															
SCG5	6447	MSKCC	GRCh37	15	32936020	32936020	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0072303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	120	365	0	ENST00000300175.4:c.226+1G>T		p.X76_splice	ENST00000300175	NM_001144757.1	76																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803260	1803260	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0072303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	332	561	0	ENST00000260795.2:c.612C>G	p.Ile204Met	p.I204M	ENST00000260795		204	atC/atG																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599904	10599906	+	missense_variant	Missense_Mutation	ONP	CCA	CCA	AAC			P-0072303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	212	447	0	ENST00000171111.5:c.1670_1672delinsGTT	p.Leu557_Gly558delinsArgTrp	p.L557_G558delinsRW	ENST00000171111	NM_203500.1	557	cTGGgg/cGTTgg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11182177	11182177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	172	432	1	ENST00000361445.4:c.6669G>T	p.Gln2223His	p.Q2223H	ENST00000361445	NM_004958.3	2223	caG/caT																																																																															
POT1	25913	MSKCC	GRCh37	7	124510991	124510991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	26	286	0	ENST00000357628.3:c.229G>T	p.Asp77Tyr	p.D77Y	ENST00000357628	NM_015450.2	77	Gat/Tat																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500422	99500423	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0072303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			746	184	542	0	ENST00000268035.6:c.3857dup	p.Leu1287AlafsTer87	p.L1287Afs*87	ENST00000268035	NM_000875.3	1285	-/A																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864409	162864409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	179	468	0	ENST00000366898.1:c.104G>T	p.Gly35Val	p.G35V	ENST00000366898	NM_004562.2	35	gGg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782177		P-0072307-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	233	478	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437726	49437730	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTT	CCCTT	-			P-0072307-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	213	478	0	ENST00000301067.7:c.5240_5244del	p.Glu1747GlyfsTer2	p.E1747Gfs*2	ENST00000301067	NM_003482.3	1747	gAAGGG/g																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502889	186502889	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0072307-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	106	363	0	ENST00000323963.5:c.347A>T	p.Gln116Leu	p.Q116L	ENST00000323963		116	cAg/cTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610073	10610073	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0020792-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			623	61	539	0	ENST00000171111.5:c.637G>T	p.Glu213Ter	p.E213*	ENST00000171111	NM_203500.1	213	Gag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1220382	1220382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020792-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			592	45	630	0	ENST00000326873.7:c.475C>T	p.Gln159Ter	p.Q159*	ENST00000326873	NM_000455.4	159	Cag/Tag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992804	68992804	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020792-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			534	53	456	0	ENST00000288368.4:c.1769T>C	p.Ile590Thr	p.I590T	ENST00000288368	NM_024870.2	590	aTa/aCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020792-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			393	24	333	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ALK	238	MSKCC	GRCh37	2	29754874	29754874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020792-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			632	46	594	0	ENST00000389048.3:c.1061A>G	p.His354Arg	p.H354R	ENST00000389048	NM_004304.4	354	cAc/cGc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519663	176519663	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020792-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			594	61	680	0	ENST00000292408.4:c.935G>T	p.Ser312Ile	p.S312I	ENST00000292408	NM_213647.1	312	aGc/aTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374642	118374642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033387-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			599	44	547	0	ENST00000534358.1:c.8035G>A	p.Glu2679Lys	p.E2679K	ENST00000534358	NM_005933.3	2679	Gaa/Aaa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562256	176562256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033387-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			673	57	507	0	ENST00000439151.2:c.152C>T	p.Ser51Leu	p.S51L	ENST00000439151	NM_022455.4	51	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033387-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			371	34	334	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141551403	141551403	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033387-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			613	85	458	0	ENST00000220592.5:c.1894C>T	p.Gln632Ter	p.Q632*	ENST00000220592	NM_012154.3	632	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630006	187630006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033387-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			621	40	517	0	ENST00000441802.2:c.976G>A	p.Asp326Asn	p.D326N	ENST00000441802	NM_005245.3	326	Gac/Aac																																																																															
KDM5A	5927	MSKCC	GRCh37	12	465617	465617	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033387-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			431	43	370	0	ENST00000399788.2:c.759G>T	p.Met253Ile	p.M253I	ENST00000399788	NM_001042603.1	253	atG/atT																																																																															
STK11	6794	MSKCC	GRCh37	19	1221298	1221299	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033387-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			614	105	608	0	ENST00000326873.7:c.824dup	p.Asp277ArgfsTer8	p.D277Rfs*8	ENST00000326873	NM_000455.4	274	atc/atCc																																																																															
ALK	238	MSKCC	GRCh37	2	29446259	29446259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033387-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			570	59	606	0	ENST00000389048.3:c.3308C>A	p.Ser1103Tyr	p.S1103Y	ENST00000389048	NM_004304.4	1103	tCc/tAc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022746	12022746	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AG			P-0033387-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			747	64	676	0	ENST00000396373.4:c.852delinsAG	p.Val285GlyfsTer15	p.V285Gfs*15	ENST00000396373	NM_001987.4	284	tcC/tcAG																																																																															
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0063078-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			241	504	697	0	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag																																																																															
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs864622007		P-0063078-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			283	219	319	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5123120	5123120	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs772889316		P-0063078-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	104	289	0	ENST00000381652.3:c.3176C>T	p.Ala1059Val	p.A1059V	ENST00000381652	NM_004972.3	1059	gCg/gTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103749	47103749	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063078-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			485	333	487	0	ENST00000409792.3:c.6197A>G	p.Asp2066Gly	p.D2066G	ENST00000409792	NM_014159.6	2066	gAc/gGc																																																																															
SYK	6850	MSKCC	GRCh37	9	93641058	93641058	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063078-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			349	470	389	0	ENST00000375746.1:c.1404T>G	p.Asp468Glu	p.D468E	ENST00000375746	NM_001174167.1	468	gaT/gaG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0063161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			455	692	448	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170840	11170840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			492	245	665	0	ENST00000344626.4:c.4888G>A	p.Asp1630Asn	p.D1630N	ENST00000344626	NM_003072.3	1630	Gac/Aac																																																																															
AXL	558	MSKCC	GRCh37	19	41754698	41754698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			763	107	645	0	ENST00000301178.4:c.1684C>T	p.Leu562Phe	p.L562F	ENST00000301178	NM_021913.4	562	Ctc/Ttc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053240	180053240	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777529468		P-0063161-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			524	155	738	0	ENST00000261937.6:c.1129G>A	p.Gly377Arg	p.G377R	ENST00000261937	NM_182925.4	377	Ggg/Agg																																																																															
MAD2L2	10459	MSKCC	GRCh37	1	11736105	11736105	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	107	465	0	ENST00000235310.3:c.425del	p.Pro142GlnfsTer45	p.P142Qfs*45	ENST00000235310		142	cCa/ca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023909	27023923	+	inframe_deletion	In_Frame_Del	DEL	GCTGCGGCGGCGGCA	GCTGCGGCGGCGGCA	-	rs751352361		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	88	619	0	ENST00000324856.7:c.1029_1043del	p.Ala345_Ala349del	p.A345_A349del	ENST00000324856	NM_006015.4	339	GCTGCGGCGGCGGCA/-																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101611	27101612	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	173	573	0	ENST00000324856.7:c.4899dup	p.Met1634HisfsTer14	p.M1634Hfs*14	ENST00000324856	NM_006015.4	1631	-/C																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	200	657	5	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46532705	46532705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	76	400	0	ENST00000262741.5:c.373del	p.Ser125LeufsTer4	p.S125Lfs*4	ENST00000262741	NM_003629.3	125	Tct/ct																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46740268	46740268	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs28363243		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	158	458	0	ENST00000371975.4:c.1748T>C	p.Ile583Thr	p.I583T	ENST00000371975	NM_003579.3	583	aTt/aCt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	212	502	0	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115269698	115269698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	51	279	0	ENST00000438362.2:c.1508G>A	p.Gly503Asp	p.G503D	ENST00000438362	NM_001242891.1	503	gGc/gAc																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117690387	117690387	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1289431844		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	133	398	0	ENST00000369458.3:c.742C>T	p.Arg248Trp	p.R248W	ENST00000369458	NM_024626.3	248	Cgg/Tgg																																																																															
WT1	7490	MSKCC	GRCh37	11	32414240	32414240	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	134	405	0	ENST00000332351.3:c.1311G>C	p.Gln437His	p.Q437H	ENST00000332351	NM_024426.4	437	caG/caC																																																																															
APLNR	187	MSKCC	GRCh37	11	57003943	57003943	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	A	A	G			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	145	599	0	ENST00000257254.3:c.536T>C	p.Val179Ala	p.V179A	ENST00000257254		179	gTg/gCg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999024	100999024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	135	722	0	ENST00000325455.5:c.778del	p.Ala260ArgfsTer41	p.A260Rfs*41	ENST00000325455	NM_001202474.3	260	Gcg/cg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	420160	420160	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746956221		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	187	523	0	ENST00000399788.2:c.3107G>A	p.Arg1036His	p.R1036H	ENST00000399788	NM_001042603.1	1036	cGt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445203	49445203	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	194	814	3	ENST00000301067.7:c.2263del	p.Arg755GlyfsTer175	p.R755Gfs*175	ENST00000301067	NM_003482.3	755	Cgg/gg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495324	56495324	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	148	577	0	ENST00000267101.3:c.3514T>C	p.Ser1172Pro	p.S1172P	ENST00000267101	NM_001982.3	1172	Tcc/Ccc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	169	615	4	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900419	32900419	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	70	296	0	ENST00000380152.3:c.516G>T	p.Lys172Asn	p.K172N	ENST00000380152		172	aaG/aaT																																																																															
BRCA2	675	MSKCC	GRCh37	13	32905069	32905070	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	59	199	0	ENST00000380152.3:c.700dup	p.Ser234PhefsTer4	p.S234Ffs*4	ENST00000380152		232	tat/taTt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	140	470	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
BLM	641	MSKCC	GRCh37	15	91326107	91326107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	80	301	0	ENST00000355112.3:c.2611C>T	p.Pro871Ser	p.P871S	ENST00000355112	NM_000057.2	871	Cct/Tct																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467906	99467906	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	38	431	0	ENST00000268035.6:c.2775G>T	p.Gln925His	p.Q925H	ENST00000268035	NM_000875.3	925	caG/caT																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222339	2222339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771191963		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	158	678	0	ENST00000326181.6:c.623G>A	p.Arg208Gln	p.R208Q	ENST00000326181	NM_032271.2	208	cGa/cAa																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7976144	7976144	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	185	510	0	ENST00000319144.4:c.2051C>A	p.Pro684His	p.P684H	ENST00000319144	NM_001139.2	684	cCc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440904	56440904	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1458799446		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	191	564	0	ENST00000407977.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000407977		145	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	174	622	1	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612350	1612355	+	inframe_deletion	In_Frame_Del	DEL	CCCGCT	CCCGCT	-			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	145	656	0	ENST00000344749.5:c.1664_1669del	p.Glu555_Arg556del	p.E555_R556del	ENST00000344749	NM_001136139.2	555	gAGCGGGtg/gtg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15308382	15308383	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs749829137		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	109	563	0	ENST00000263388.2:c.125dup	p.Cys43LeufsTer32	p.C43Lfs*32	ENST00000263388	NM_000435.2	42	cct/ccCt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17946800	17946800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370419724		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	50	531	0	ENST00000458235.1:c.1847G>A	p.Gly616Asp	p.G616D	ENST00000458235	NM_000215.3	616	gGc/gAc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30312916	30312916	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146040933		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	132	501	0	ENST00000262643.3:c.719G>A	p.Arg240His	p.R240H	ENST00000262643	NM_001238.2	240	cGt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214143	36214143	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	34	545	0	ENST00000222270.7:c.2969T>C	p.Phe990Ser	p.F990S	ENST00000222270	NM_014727.1	990	tTt/tCt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905175	50905175	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	158	722	0	ENST00000440232.2:c.461del	p.Pro154LeufsTer15	p.P154Lfs*15	ENST00000440232	NM_002691.3	153	Ccc/cc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	43	612	3	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
MYCN	4613	MSKCC	GRCh37	2	16082313	16082314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs780080562		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	40	618	0	ENST00000281043.3:c.134dup	p.Glu47GlyfsTer8	p.E47Gfs*8	ENST00000281043	NM_005378.4	43	acc/aCcc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607704	46607704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	157	596	0	ENST00000263734.3:c.1893G>A	p.Met631Ile	p.M631I	ENST00000263734	NM_001430.4	631	atG/atA																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198257170	198257170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	66	264	0	ENST00000335508.6:c.3772G>A	p.Ala1258Thr	p.A1258T	ENST00000335508	NM_012433.2	1258	Gcc/Acc																																																																															
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	101	316	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426814	212426814	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	93	354	0	ENST00000342788.4:c.2302-1G>T		p.X768_splice	ENST00000342788	NM_005235.2	768																																																																																
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	180	677	1	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021476	31021476	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141314105		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	187	630	0	ENST00000375687.4:c.1475C>T	p.Ala492Val	p.A492V	ENST00000375687	NM_015338.5	492	gCt/gTt																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45660687	45660687	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	117	518	0	ENST00000407780.3:c.14G>A	p.Ser5Asn	p.S5N	ENST00000407780	NM_001283052.1	5	aGt/aAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	219	450	7	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
MLH1	4292	MSKCC	GRCh37	3	37053348	37053348	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1192414628		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	101	368	0	ENST00000231790.2:c.588del	p.Lys196AsnfsTer6	p.K196Nfs*6	ENST00000231790	NM_000249.3	195	Aaa/aa																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665126	138665126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	122	522	0	ENST00000330315.3:c.439C>T	p.Arg147Cys	p.R147C	ENST00000330315	NM_023067.3	147	Cgc/Tgc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170020899	170020899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			60	20	74	0	ENST00000295797.4:c.1775C>T	p.Ala592Val	p.A592V	ENST00000295797	NM_002740.5	592	gCa/gTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919194	178919194	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	69	262	1	ENST00000263967.3:c.685del	p.Thr229LeufsTer11	p.T229Lfs*11	ENST00000263967	NM_006218.2	227	Aaa/aa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	132	699	4	ENST00000382895.3:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382895	NM_133330.2	1341	Ccc/cc																																																																															
KDR	3791	MSKCC	GRCh37	4	55979551	55979551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375035755		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	104	395	0	ENST00000263923.4:c.896G>A	p.Arg299Gln	p.R299Q	ENST00000263923	NM_002253.2	299	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	144	383	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	127	490	5	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	86	318	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931451	131931452	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs397507178		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	126	374	8	ENST00000265335.6:c.2165dup	p.Glu723GlyfsTer5	p.E723Gfs*5	ENST00000265335		719	cta/ctAa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149509482	149509482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	59	620	0	ENST00000261799.4:c.1417G>A	p.Glu473Lys	p.E473K	ENST00000261799	NM_002609.3	473	Gag/Aag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180045890	180045890	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868478447		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	41	683	0	ENST00000261937.6:c.2881C>T	p.Arg961Cys	p.R961C	ENST00000261937	NM_182925.4	961	Cgc/Tgc																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402605	20402605	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775788562		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	37	643	1	ENST00000346618.3:c.142G>A	p.Ala48Thr	p.A48T	ENST00000346618	NM_001949.4	48	Gcc/Acc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910344	29910344	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	376	730	0	ENST00000376809.5:c.14del	p.Ala5GlyfsTer15	p.A5Gfs*15	ENST00000376809	NM_002116.7	5	gCg/gg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	188	404	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
CCND3	896	MSKCC	GRCh37	6	41903731	41903731	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	171	656	0	ENST00000372991.4:c.826C>T	p.Gln276Ter	p.Q276*	ENST00000372991	NM_001760.3	276	Caa/Taa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117706847	117706847	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	128	371	0	ENST00000368508.3:c.2303T>G	p.Val768Gly	p.V768G	ENST00000368508	NM_002944.2	768	gTg/gGg																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519505	137519506	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs780346130		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	166	512	5	ENST00000367739.4:c.1132_1133del	p.Ser378PhefsTer6	p.S378Ffs*6	ENST00000367739	NM_000416.2	378	AGt/t																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005137	150005137	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1048146595		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	90	592	0	ENST00000253339.5:c.1088T>C	p.Val363Ala	p.V363A	ENST00000253339		363	gTc/gCc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129133	152129133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	153	616	0	ENST00000206249.3:c.86C>T	p.Pro29Leu	p.P29L	ENST00000206249	NM_000125.3	29	cCg/cTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099982	157099990	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-	rs757008446		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	101	814	0	ENST00000346085.5:c.936_944del	p.Gly317_Gly319del	p.G317_G319del	ENST00000346085	NM_020732.3	307	GGCGGCGGC/-																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962902	2962902	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs186255478		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	77	468	0	ENST00000396946.4:c.2006C>T	p.Thr669Met	p.T669M	ENST00000396946	NM_032415.4	669	aCg/aTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	74	372	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	158	811	4	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402761	139402761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	166	665	0	ENST00000277541.6:c.3248G>A	p.Cys1083Tyr	p.C1083Y	ENST00000277541	NM_017617.3	1083	tGc/tAc																																																																															
ARAF	369	MSKCC	GRCh37	X	47422384	47422384	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	44	195	0	ENST00000377045.4:c.23del	p.Pro8LeufsTer26	p.P8Lfs*26	ENST00000377045	NM_001654.4	6	ggC/gg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63409950	63409950	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1205869591		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			107	323	325	0	ENST00000330258.3:c.3217C>T	p.Pro1073Ser	p.P1073S	ENST00000330258	NM_152424.3	1073	Cca/Tca																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177848	56177849	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAA	rs769777412		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	111	610	0	ENST00000399503.3:c.2845_2847dup	p.Thr949dup	p.T949dup	ENST00000399503	NM_005921.1	949	tca/tCAAca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831357	72831358	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTG	rs552138038		P-0063907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	89	569	2	ENST00000268489.5:c.5221_5223dup	p.Gln1741dup	p.Q1741dup	ENST00000268489	NM_006885.3	1741	-/CAA																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396746	139396746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	234	499	0	ENST00000277541.6:c.5362G>A	p.Gly1788Ser	p.G1788S	ENST00000277541	NM_017617.3	1788	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0063923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	304	662	1	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112175749	112175750	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0063923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	113	587	0	ENST00000257430.4:c.4459dup	p.Thr1487AsnfsTer27	p.T1487Nfs*27	ENST00000257430	NM_000038.5	1486	-/A																																																																															
ALK	238	MSKCC	GRCh37	2	29445208	29445208	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0063923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	238	535	0	ENST00000389048.3:c.3515+2T>A		p.X1172_splice	ENST00000389048	NM_004304.4	1172																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89457282	89457282	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0063923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	31	368	0	ENST00000336596.2:c.1762+1del		p.X588_splice	ENST00000336596	NM_005233.5	588																																																																																
APC	324	MSKCC	GRCh37	5	112162825	112162825	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	73	372	0	ENST00000257430.4:c.1429G>T	p.Glu477Ter	p.E477*	ENST00000257430	NM_000038.5	477	Gaa/Taa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691187		P-0063995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			829	121	581	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0063995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	139	554	0	ENST00000269305.4:c.672G>C	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaC																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467921	50467921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			869	64	583	0	ENST00000331340.3:c.1156C>T	p.Arg386Cys	p.R386C	ENST00000331340	NM_006060.4	386	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0063995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	79	349	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243397	46243397	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	46	439	0	ENST00000334344.6:c.1750G>C	p.Glu584Gln	p.E584Q	ENST00000334344	NM_152641.2	584	Gag/Cag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210728	2210728	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745700742		P-0063999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	40	661	0	ENST00000398665.3:c.1225C>T	p.Arg409Cys	p.R409C	ENST00000398665	NM_032482.2	409	Cgc/Tgc																																																																															
EP300	2033	MSKCC	GRCh37	22	41574637	41574637	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145312648		P-0063999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	80	640	0	ENST00000263253.7:c.6922C>T	p.Arg2308Cys	p.R2308C	ENST00000263253	NM_001429.3	2308	Cgc/Tgc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48649669	48649669	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	30	309	0	ENST00000376670.3:c.153C>G	p.Ser51Arg	p.S51R	ENST00000376670	NM_002049.3	51	agC/agG																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913500		P-0064002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	107	375	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519551	137519551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	27	390	0	ENST00000367739.4:c.1087C>T	p.Pro363Ser	p.P363S	ENST00000367739	NM_000416.2	363	Cct/Tct																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230665	46230665	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0064002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	37	396	0	ENST00000334344.6:c.914del	p.Leu305ProfsTer23	p.L305Pfs*23	ENST00000334344	NM_152641.2	305	cTc/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832497	72832497	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	262	440	0	ENST00000268489.5:c.4084T>A	p.Cys1362Ser	p.C1362S	ENST00000268489	NM_006885.3	1362	Tgc/Agc																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690355	33690355	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	119	431	0	ENST00000308377.4:c.472C>A	p.Pro158Thr	p.P158T	ENST00000308377	NM_152270.3	158	Cca/Aca																																																																															
JAK3	3718	MSKCC	GRCh37	19	17952250	17952250	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1240876834		P-0064002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	124	378	0	ENST00000458235.1:c.1090G>T	p.Ala364Ser	p.A364S	ENST00000458235	NM_000215.3	364	Gca/Tca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223033	36223033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	174	696	0	ENST00000222270.7:c.5662C>T	p.Pro1888Ser	p.P1888S	ENST00000222270	NM_014727.1	1888	Cct/Tct																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076905	41076905	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	109	314	0	ENST00000373198.4:c.1515G>T	p.Gln505His	p.Q505H	ENST00000373198	NM_133170.3	505	caG/caT																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259276	36259276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	111	465	0	ENST00000300305.3:c.215G>A	p.Arg72Lys	p.R72K	ENST00000300305		72	aGg/aAg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020753	37020753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	134	378	0	ENST00000358127.4:c.92G>A	p.Arg31Gln	p.R31Q	ENST00000358127	NM_001280556.1	31	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	45	265	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106185	27106186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0064017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	109	537	0	ENST00000324856.7:c.5796_5797insT	p.Ile1933TyrfsTer12	p.I1933Yfs*12	ENST00000324856	NM_006015.4	1932	-/T																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245411	46245411	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	116	451	0	ENST00000334344.6:c.3505G>T	p.Gly1169Cys	p.G1169C	ENST00000334344	NM_152641.2	1169	Ggc/Tgc																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349065	11349065	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	83	432	0	ENST00000332029.2:c.271G>T	p.Glu91Ter	p.E91*	ENST00000332029	NM_003745.1	91	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0065822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			427	65	406	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29679366	29679366	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs866445127		P-0065822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			487	75	344	0	ENST00000358273.4:c.7549C>T	p.Arg2517Ter	p.R2517*	ENST00000358273	NM_001042492.2	2517	Cga/Tga																																																																															
ALK	238	MSKCC	GRCh37	2	30142865	30142865	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs199584443		P-0065822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			449	49	358	0	ENST00000389048.3:c.661G>C	p.Gly221Arg	p.G221R	ENST00000389048	NM_004304.4	221	Ggg/Cgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40757461	40757461	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			532	67	376	0	ENST00000373198.4:c.2837C>A	p.Ser946Tyr	p.S946Y	ENST00000373198	NM_133170.3	946	tCc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112128164	112128164	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			352	20	237	1	ENST00000257430.4:c.667C>T	p.Gln223Ter	p.Q223*	ENST00000257430	NM_000038.5	223	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0065822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			433	42	381	1	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048839	180048839	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773839174		P-0065822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	39	469	1	ENST00000261937.6:c.1723C>T	p.Leu575Phe	p.L575F	ENST00000261937	NM_182925.4	575	Ctc/Ttc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0066883-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			522	170	567	2	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0066883-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			726	224	857	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207203	1207203	+	splice_donor_variant	Splice_Site	SNP	G	G	C	rs1131690950		P-0066883-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			558	241	544	0	ENST00000326873.7:c.290+1G>C		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10610479	10610479	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066883-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			640	269	634	0	ENST00000171111.5:c.231T>G	p.Cys77Trp	p.C77W	ENST00000171111	NM_203500.1	77	tgT/tgG																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502688	149502688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066883-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			632	199	763	0	ENST00000261799.4:c.2100C>A	p.Phe700Leu	p.F700L	ENST00000261799	NM_002609.3	700	ttC/ttA																																																																															
WT1	7490	MSKCC	GRCh37	11	32438049	32438049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066883-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			682	68	540	0	ENST00000332351.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000332351	NM_024426.4	330	Gaa/Aaa																																																																															
RET	5979	MSKCC	GRCh37	10	43604572	43604572	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1848	267	468	0	ENST00000355710.3:c.1157C>A	p.Ala386Glu	p.A386E	ENST00000355710	NM_020975.4	386	gCg/gAg																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913233		P-0067000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			2326	905	541	1	ENST00000311189.7:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000311189		61	cAg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0067000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1255	594	464	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29559168	29559168	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1086	171	223	0	ENST00000358273.4:c.3275G>C	p.Gly1092Ala	p.G1092A	ENST00000358273	NM_001042492.2	1092	gGt/gCt																																																																															
AKT2	208	MSKCC	GRCh37	19	40741238	40741238	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1319165364		P-0067000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1061	807	419	0	ENST00000392038.2:c.1195G>A	p.Asp399Asn	p.D399N	ENST00000392038	NM_001626.4	399	Gat/Aat																																																																															
SOS1	6654	MSKCC	GRCh37	2	39285863	39285863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1460	220	340	0	ENST00000402219.2:c.296G>A	p.Arg99Gln	p.R99Q	ENST00000402219	NM_005633.3	99	cGa/cAa																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699379	117699379	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1772	598	425	0	ENST00000369458.3:c.262G>C	p.Asp88His	p.D88H	ENST00000369458	NM_024626.3	88	Gat/Cat																																																																															
CTCF	10664	MSKCC	GRCh37	16	67663338	67663338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1146	580	422	0	ENST00000264010.4:c.1739C>T	p.Pro580Leu	p.P580L	ENST00000264010	NM_006565.3	580	cCa/cTa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37667854	37667854	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0067000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1843	269	378	0	ENST00000447079.4:c.2739C>A	p.Tyr913Ter	p.Y913*	ENST00000447079	NM_015083.1	913	taC/taA																																																																															
MSH2	4436	MSKCC	GRCh37	2	47641492	47641492	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1296650088		P-0067000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1181	549	316	0	ENST00000233146.2:c.877A>G	p.Thr293Ala	p.T293A	ENST00000233146	NM_000251.2	293	Act/Gct																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530198	212530199	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0067000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1595	662	429	0	ENST00000342788.4:c.1720_1721del	p.Pro574Ter	p.P574*	ENST00000342788	NM_005235.2	574	CCt/t																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733222	40733222	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1474	539	438	0	ENST00000373198.4:c.3584A>G	p.Lys1195Arg	p.K1195R	ENST00000373198	NM_133170.3	1195	aAa/aGa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445050	89445052	+	missense_variant	Missense_Mutation	ONP	GGC	GGC	TGA			P-0067000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1612	279	468	0	ENST00000336596.2:c.1370_1372delinsTGA	p.Trp457_Gln458delinsLeuLys	p.W457_Q458delinsLK	ENST00000336596	NM_005233.5	457	tGGCaa/tTGAaa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445052	89445052	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1311	564	461	0	ENST00000336596.2:c.1372C>A	p.Gln458Lys	p.Q458K	ENST00000336596	NM_005233.5	458	Caa/Aaa																																																																															
ALB	213	MSKCC	GRCh37	4	74274452	74274452	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs77238412		P-0067000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1651	588	456	0	ENST00000295897.4:c.412C>T	p.Arg138Ter	p.R138*	ENST00000295897	NM_000477.5	138	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332815	153332815	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0067000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1727	578	458	0	ENST00000281708.4:c.141A>T	p.Gln47His	p.Q47H	ENST00000281708	NM_033632.3	47	caA/caT																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87359919	87359919	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1711	305	378	0	ENST00000277120.3:c.1227C>G	p.Asp409Glu	p.D409E	ENST00000277120		409	gaC/gaG																																																																															
ARAF	369	MSKCC	GRCh37	X	47424404	47424404	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1641	297	502	0	ENST00000377045.4:c.324C>G	p.Ser108Arg	p.S108R	ENST00000377045	NM_001654.4	108	agC/agG																																																																															
MED12	9968	MSKCC	GRCh37	X	70341475	70341475	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1487	311	414	0	ENST00000374080.3:c.910A>G	p.Arg304Gly	p.R304G	ENST00000374080		304	Aga/Gga																																																																															
ATRX	546	MSKCC	GRCh37	X	76939051	76939051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1445	266	395	1	ENST00000373344.5:c.1697C>T	p.Ser566Phe	p.S566F	ENST00000373344	NM_000489.3	566	tCt/tTt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123224795	123224795	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1344	205	352	0	ENST00000218089.9:c.3559A>T	p.Thr1187Ser	p.T1187S	ENST00000218089	NM_001042749.1	1187	Act/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7572960	7572960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	61	445	0	ENST00000269305.4:c.1149del	p.Met384CysfsTer38	p.M384Cfs*38	ENST00000269305	NM_001126112.2	383	ctC/ct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0067002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	56	260	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
REST	5978	MSKCC	GRCh37	4	57797027	57797027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	32	647	0	ENST00000309042.7:c.2003C>T	p.Pro668Leu	p.P668L	ENST00000309042	NM_005612.4	668	cCt/cTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974718	21974718	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	38	498	0	ENST00000304494.5:c.109del	p.Leu37CysfsTer16	p.L37Cfs*16	ENST00000304494	NM_000077.4	37	Ctg/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0067040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	133	485	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268144	153268144	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs920052554		P-0067040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	72	455	0	ENST00000281708.4:c.664C>T	p.Arg222Ter	p.R222*	ENST00000281708	NM_033632.3	222	Cga/Tga																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465453	99465453	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs70958396		P-0067040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	69	409	1	ENST00000268035.6:c.2278G>A	p.Ala760Thr	p.A760T	ENST00000268035	NM_000875.3	760	Gca/Aca																																																																															
BRAF	673	MSKCC	GRCh37	7	140434555	140434555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	57	299	0	ENST00000288602.6:c.2143G>A	p.Glu715Lys	p.E715K	ENST00000288602	NM_004333.4	715	Gag/Aag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937354	32937355	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	165	382	0	ENST00000380152.3:c.8021dup	p.Ile2675AspfsTer6	p.I2675Dfs*6	ENST00000380152		2672	ata/atAa																																																																															
KDR	3791	MSKCC	GRCh37	4	55958789	55958789	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	42	287	1	ENST00000263923.4:c.3064C>T	p.Arg1022Ter	p.R1022*	ENST00000263923	NM_002253.2	1022	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175762	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0067040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	49	435	0	ENST00000257430.4:c.4472_4473del	p.Phe1491CysfsTer22	p.F1491Cfs*22	ENST00000257430	NM_000038.5	1490	caTTtt/catt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256572	115256572	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	38	313	0	ENST00000369535.4:c.139G>C	p.Asp47His	p.D47H	ENST00000369535	NM_002524.4	47	Gat/Cat																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912199	114912199	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	G			P-0067040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	112	263	0	ENST00000543371.1:c.1269T>G	p.Tyr423Ter	p.Y423*	ENST00000543371	NM_001198531.1	423	taT/taG																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986727	36986727	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	53	452	0	ENST00000354822.5:c.962A>G	p.Gln321Arg	p.Q321R	ENST00000354822	NM_001079668.2	321	cAg/cGg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190433	32190433	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	60	484	0	ENST00000375023.3:c.306G>C	p.Leu102Phe	p.L102F	ENST00000375023	NM_004557.3	102	ttG/ttC																																																																															
PGR	5241	MSKCC	GRCh37	11	100912812	100912812	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	23	402	0	ENST00000325455.5:c.2510G>T	p.Ser837Ile	p.S837I	ENST00000325455	NM_001202474.3	837	aGt/aTt																																																																															
ALK	238	MSKCC	GRCh37	2	30142963	30142963	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770625956		P-0067040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	67	473	1	ENST00000389048.3:c.563G>A	p.Arg188His	p.R188H	ENST00000389048	NM_004304.4	188	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	288	505	0	ENST00000269305.4:c.527G>C	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	tGc/tCc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89478259	89478259	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	45	302	0	ENST00000336596.2:c.2078A>C	p.Lys693Thr	p.K693T	ENST00000336596	NM_005233.5	693	aAg/aCg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922796	44922796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	37	215	0	ENST00000377967.4:c.1657G>A	p.Val553Ile	p.V553I	ENST00000377967	NM_021140.2	553	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112175535	112175535	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	152	450	0	ENST00000257430.4:c.4244del	p.Ser1415MetfsTer4	p.S1415Mfs*4	ENST00000257430	NM_000038.5	1415	aGt/at																																																																															
APC	324	MSKCC	GRCh37	5	112174654	112174655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	71	473	0	ENST00000257430.4:c.3365dup	p.Asn1122LysfsTer13	p.N1122Kfs*13	ENST00000257430	NM_000038.5	1121	-/A																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931700	39931700	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067079-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	185	171	0	ENST00000378444.4:c.2899G>T	p.Ala967Ser	p.A967S	ENST00000378444	NM_001123385.1	967	Gcc/Tcc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038864	12038864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	117	417	0	ENST00000396373.4:c.1157G>C	p.Arg386Thr	p.R386T	ENST00000396373	NM_001987.4	386	aGa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0067106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	132	421	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0067106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	237	532	0	ENST00000397752.3:c.3028+1G>A		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
SPRTN	83932	MSKCC	GRCh37	1	231475590	231475590	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	74	321	0	ENST00000295050.7:c.297G>C	p.Leu99Phe	p.L99F	ENST00000295050	NM_032018.5	99	ttG/ttC																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589692	69589692	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	67	689	0	ENST00000168712.1:c.161C>G	p.Ser54Trp	p.S54W	ENST00000168712	NM_002007.2	54	tCg/tGg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94197365	94197365	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781646		P-0067106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	41	360	0	ENST00000323929.3:c.1139G>A	p.Arg380His	p.R380H	ENST00000323929	NM_005591.3	380	cGc/cAc																																																																															
USP8	9101	MSKCC	GRCh37	15	50784914	50784914	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0067106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	41	326	0	ENST00000307179.4:c.2251A>T	p.Lys751Ter	p.K751*	ENST00000307179		751	Aaa/Taa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857797	9857797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	66	536	0	ENST00000330684.3:c.3604G>A	p.Glu1202Lys	p.E1202K	ENST00000330684	NM_001134407.1	1202	Gag/Aag																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793436	242793436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	61	459	0	ENST00000334409.5:c.641C>T	p.Ser214Leu	p.S214L	ENST00000334409	NM_005018.2	214	tCa/tTa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161880	47161880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	86	465	0	ENST00000409792.3:c.4246G>A	p.Glu1416Lys	p.E1416K	ENST00000409792	NM_014159.6	1416	Gaa/Aaa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30676066	30676066	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067106-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	60	404	0	ENST00000376406.3:c.2290G>C	p.Glu764Gln	p.E764Q	ENST00000376406	NM_014641.2	764	Gag/Cag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259043	16259043	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	155	398	0	ENST00000375759.3:c.6313del	p.Ala2105LeufsTer33	p.A2105Lfs*33	ENST00000375759	NM_015001.2	2103	aGg/ag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261245	16261246	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	132	371	0	ENST00000375759.3:c.8516dup	p.Ala2840GlyfsTer7	p.A2840Gfs*7	ENST00000375759	NM_015001.2	2837	atc/atCc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092773	27092773	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	131	345	0	ENST00000324856.7:c.2794C>T	p.Gln932Ter	p.Q932*	ENST00000324856	NM_006015.4	932	Caa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	169	443	1	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	152	408	0	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123239441	123239442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	60	366	0	ENST00000358487.5:c.2395dup	p.Ser799PhefsTer22	p.S799Ffs*22	ENST00000358487	NM_000141.4	799	tct/tTct																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594883	47594883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780075355		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	144	475	1	ENST00000395288.2:c.1156del	p.Glu386ArgfsTer27	p.E386Rfs*27	ENST00000395288	NM_016506.5	386	Gag/ag																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67201718	67201718	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199570304		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	162	511	0	ENST00000312629.5:c.1019G>A	p.Arg340His	p.R340H	ENST00000312629	NM_003952.2	340	cGt/cAt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022634	12022634	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144782370		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	175	391	0	ENST00000396373.4:c.740C>T	p.Ala247Val	p.A247V	ENST00000396373	NM_001987.4	247	gCg/gTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230604	46230604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	98	390	0	ENST00000334344.6:c.853C>T	p.Arg285Trp	p.R285W	ENST00000334344	NM_152641.2	285	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420204	49420204	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	126	384	2	ENST00000301067.7:c.15545del	p.Gly5182AlafsTer61	p.G5182Afs*61	ENST00000301067	NM_003482.3	5182	gGc/gc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21565435	21565435	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1217575272		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	29	437	0	ENST00000382592.4:c.451C>T	p.Arg151Trp	p.R151W	ENST00000382592	NM_014572.2	151	Cgg/Tgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	32	352	0	ENST00000380152.3:c.5351del	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988308	36988309	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1418373503		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	107	337	0	ENST00000354822.5:c.344dup	p.Tyr116LeufsTer323	p.Y116Lfs*323	ENST00000354822	NM_001079668.2	115	ggc/ggGc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061726	38061726	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	16	395	2	ENST00000250448.2:c.263del	p.Gly88AlafsTer6	p.G88Afs*6	ENST00000250448	NM_004496.3	88	gGc/gc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223514	2223514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	175	431	0	ENST00000326181.6:c.1045G>A	p.Glu349Lys	p.E349K	ENST00000326181	NM_032271.2	349	Gag/Aag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032163	10032163	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	26	364	0	ENST00000330684.3:c.660G>T	p.Lys220Asn	p.K220N	ENST00000330684	NM_001134407.1	220	aaG/aaT																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30134383	30134383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	96	305	0	ENST00000263025.4:c.148G>A	p.Glu50Lys	p.E50K	ENST00000263025	NM_002746.2	50	Gag/Aag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821620	72821620	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751386892		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	113	369	0	ENST00000268489.5:c.10555G>A	p.Gly3519Ser	p.G3519S	ENST00000268489	NM_006885.3	3519	Ggt/Agt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	144	427	2	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346424	89346424	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1228696930		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	50	378	0	ENST00000301030.4:c.6526G>A	p.Gly2176Ser	p.G2176S	ENST00000301030	NM_001256183.1	2176	Ggt/Agt																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	147	371	3	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	288	469	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912835	50912835	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146530638		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	139	402	0	ENST00000440232.2:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000440232	NM_002691.3	689	cGg/cAg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99149894	99149894	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368448330		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	110	336	0	ENST00000074304.5:c.206C>T	p.Ala69Val	p.A69V	ENST00000074304	NM_001134224.1	69	gCg/gTg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046242	128046242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	205	354	0	ENST00000285398.2:c.1021C>T	p.Pro341Ser	p.P341S	ENST00000285398	NM_000122.1	341	Ccc/Tcc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660075	227660075	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462380251		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	260	438	0	ENST00000305123.5:c.3380del	p.Gly1127AlafsTer12	p.G1127Afs*12	ENST00000305123	NM_005544.2	1127	gGc/gc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714369	40714369	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs775489787		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	227	377	0	ENST00000373198.4:c.4028G>A	p.Arg1343Gln	p.R1343Q	ENST00000373198	NM_133170.3	1343	cGg/cAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790090	40790090	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	117	384	2	ENST00000373198.4:c.2641del	p.Arg881GlyfsTer20	p.R881Gfs*20	ENST00000373198	NM_133170.3	881	Cgg/gg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	120	354	2	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
MST1	4485	MSKCC	GRCh37	3	49723029	49723029	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1225484117		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	86	219	0	ENST00000449682.2:c.1387G>A	p.Ala463Thr	p.A463T	ENST00000449682	NM_020998.3	463	Gct/Act																																																																															
ATR	545	MSKCC	GRCh37	3	142297540	142297540	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	70	290	0	ENST00000350721.4:c.7del	p.Glu3AsnfsTer9	p.E3Nfs*9	ENST00000350721	NM_001184.3	3	Gaa/aa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31493321	31493322	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1330233722		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	26	346	2	ENST00000344624.3:c.1834dup	p.Leu612ProfsTer8	p.L612Pfs*8	ENST00000344624		612	ctg/cCtg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79950727	79950728	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGCCCC	rs747419370		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	38	296	0	ENST00000265081.6:c.195_203dup	p.Pro67_Pro69dup	p.P67_P69dup	ENST00000265081	NM_002439.4	67	gca/gCAGCGCCCCca																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	61	308	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	108	368	1	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323315	31323315	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	31	105	0	ENST00000412585.2:c.674T>C	p.Leu225Pro	p.L225P	ENST00000412585	NM_005514.6	225	cTg/cCg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508253	106508253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	274	386	0	ENST00000359195.3:c.247G>A	p.Val83Met	p.V83M	ENST00000359195	NM_002649.2	83	Gtg/Atg																																																																															
POT1	25913	MSKCC	GRCh37	7	124532385	124532385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	36	292	0	ENST00000357628.3:c.59G>A	p.Gly20Asp	p.G20D	ENST00000357628	NM_015450.2	20	gGt/gAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	129	311	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
MYC	4609	MSKCC	GRCh37	8	128750686	128750686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	336	346	0	ENST00000377970.2:c.223C>T	p.Pro75Ser	p.P75S	ENST00000377970	NM_002467.4	75	Ccc/Tcc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2104046	2104046	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199759640		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	125	297	0	ENST00000349721.2:c.3169C>T	p.Arg1057Cys	p.R1057C	ENST00000349721	NM_003070.3	1057	Cgt/Tgt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98232209	98232209	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs960630296		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	81	310	0	ENST00000331920.6:c.1733C>T	p.Ala578Val	p.A578V	ENST00000331920	NM_000264.3	578	gCg/gTg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300039	137300040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755912201		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	100	357	1	ENST00000481739.1:c.331dup	p.Leu111ProfsTer70	p.L111Pfs*70	ENST00000481739	NM_002957.4	108	-/C																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400022	139400023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	145	443	0	ENST00000277541.6:c.4325dup	p.Pro1443AlafsTer36	p.P1443Afs*36	ENST00000277541	NM_017617.3	1442	ccg/ccCg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400248	139400248	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758787267		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	140	399	0	ENST00000277541.6:c.4100C>T	p.Pro1367Leu	p.P1367L	ENST00000277541	NM_017617.3	1367	cCg/cTg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	128	234	0	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
AR	367	MSKCC	GRCh37	X	66942823	66942823	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	14	134	0	ENST00000374690.3:c.2604G>T	p.Gln868His	p.Q868H	ENST00000374690	NM_000044.3	868	caG/caT																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78428582	78428582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	66	297	0	ENST00000370768.2:c.1217C>T	p.Ser406Phe	p.S406F	ENST00000370768	NM_003902.3	406	tCt/tTt																																																																															
SUFU	51684	MSKCC	GRCh37	10	104268968	104268968	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs141532626		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	113	357	0	ENST00000369902.3:c.225G>T	p.Arg75Ser	p.R75S	ENST00000369902	NM_016169.3	75	agG/agT																																																																															
PGR	5241	MSKCC	GRCh37	11	100998723	100998723	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs377716203		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	155	369	0	ENST00000325455.5:c.1079A>G	p.Asp360Gly	p.D360G	ENST00000325455	NM_001202474.3	360	gAc/gGc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21630844	21630844	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200538229		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	81	344	0	ENST00000421138.2:c.760A>G	p.Thr254Ala	p.T254A	ENST00000421138		254	Act/Gct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426706	49426706	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	282	448	0	ENST00000301067.7:c.11782C>T	p.Gln3928Ter	p.Q3928*	ENST00000301067	NM_003482.3	3928	Cag/Tag																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562494	21562494	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	44	310	0	ENST00000382592.4:c.1425del	p.Ala476ProfsTer183	p.A476Pfs*183	ENST00000382592	NM_014572.2	475	ccC/cc																																																																															
KLF5	688	MSKCC	GRCh37	13	73649849	73649849	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	110	313	0	ENST00000377687.4:c.1202del	p.Lys401SerfsTer20	p.K401Sfs*20	ENST00000377687	NM_001730.3	400	gAa/ga																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873812	35873812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	54	299	0	ENST00000216797.5:c.39G>A	p.Met13Ile	p.M13I	ENST00000216797	NM_020529.2	13	atG/atA																																																																															
MGA	23269	MSKCC	GRCh37	15	41989043	41989044	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	115	349	0	ENST00000219905.7:c.1840dup	p.Arg614LysfsTer11	p.R614Kfs*11	ENST00000219905	NM_001164273.1	612	gga/ggAa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701221	43701221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	119	351	0	ENST00000382044.4:c.5474C>T	p.Ala1825Val	p.A1825V	ENST00000382044	NM_001141980.1	1825	gCc/gTc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396954	396955	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	141	472	0	ENST00000262320.3:c.71dup	p.Val25SerfsTer4	p.V25Sfs*4	ENST00000262320	NM_003502.3	24	cca/ccCa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647613	3647613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	59	395	0	ENST00000294008.3:c.1450G>A	p.Glu484Lys	p.E484K	ENST00000294008	NM_032444.2	484	Gag/Aag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821600	72821601	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCGCCA			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	53	351	0	ENST00000268489.5:c.10574_10575insTGGCGG	p.Gly3526_Gly3527dup	p.G3526_G3527dup	ENST00000268489	NM_006885.3	3526	ggc/ggTGGCGGc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350895	89350895	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	105	347	0	ENST00000301030.4:c.2055del	p.Val686CysfsTer2	p.V686Cfs*2	ENST00000301030	NM_001256183.1	685	aaA/aa																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690562	33690562	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	147	371	1	ENST00000308377.4:c.265G>T	p.Asp89Tyr	p.D89Y	ENST00000308377	NM_152270.3	89	Gat/Tat																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395760	45395760	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	127	338	0	ENST00000262160.6:c.374A>T	p.His125Leu	p.H125L	ENST00000262160	NM_005901.5	125	cAt/cTt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56378167	56378167	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	54	272	0	ENST00000348428.3:c.940G>T	p.Ala314Ser	p.A314S	ENST00000348428	NM_006785.3	314	Gca/Tca																																																																															
INSR	3643	MSKCC	GRCh37	19	7184612	7184612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	120	324	0	ENST00000302850.5:c.689C>A	p.Ala230Asp	p.A230D	ENST00000302850	NM_000208.2	230	gCc/gAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097084	11097084	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	56	341	0	ENST00000344626.4:c.579del	p.Gln194SerfsTer109	p.Q194Sfs*109	ENST00000344626	NM_003072.3	192	aGg/ag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15278106	15278106	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	122	409	0	ENST00000263388.2:c.5316G>T	p.Gln1772His	p.Q1772H	ENST00000263388	NM_000435.2	1772	caG/caT																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085732	16085732	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	120	342	0	ENST00000281043.3:c.908C>A	p.Pro303His	p.P303H	ENST00000281043	NM_005378.4	303	cCc/cAc																																																																															
SRC	6714	MSKCC	GRCh37	20	36030970	36030970	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	223	424	0	ENST00000358208.4:c.1249A>C	p.Asn417His	p.N417H	ENST00000358208		417	Aat/Cat																																																																															
EP300	2033	MSKCC	GRCh37	22	41573065	41573065	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	181	419	0	ENST00000263253.7:c.5350C>T	p.Gln1784Ter	p.Q1784*	ENST00000263253	NM_001429.3	1784	Cag/Tag																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138431076	138431076	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	65	244	0	ENST00000289153.2:c.1373T>C	p.Ile458Thr	p.I458T	ENST00000289153	NM_006219.2	458	aTa/aCa																																																																															
REST	5978	MSKCC	GRCh37	4	57777675	57777675	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	75	283	0	ENST00000309042.7:c.871T>C	p.Tyr291His	p.Y291H	ENST00000309042	NM_005612.4	291	Tat/Cat																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230897	66230897	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	45	366	0	ENST00000273854.3:c.2074G>T	p.Gly692Ter	p.G692*	ENST00000273854	NM_004439.5	692	Gga/Tga																																																																															
TET2	54790	MSKCC	GRCh37	4	106193872	106193872	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	121	338	0	ENST00000380013.4:c.4334A>C	p.Gln1445Pro	p.Q1445P	ENST00000380013	NM_001127208.2	1445	cAg/cCg																																																																															
TRIP13	9319	MSKCC	GRCh37	5	917175	917175	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	136	401	0	ENST00000166345.3:c.1256A>G	p.Asp419Gly	p.D419G	ENST00000166345	NM_004237.3	419	gAc/gGc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526915	31526915	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	115	330	0	ENST00000344624.3:c.125T>G	p.Leu42Arg	p.L42R	ENST00000344624		42	cTt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175112	112175112	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1470915050		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	99	370	0	ENST00000257430.4:c.3821G>A	p.Cys1274Tyr	p.C1274Y	ENST00000257430	NM_000038.5	1274	tGt/tAt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675527	30675527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	150	411	0	ENST00000376406.3:c.2829G>T	p.Glu943Asp	p.E943D	ENST00000376406	NM_014641.2	943	gaG/gaT																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239110	31239110	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	120	305	0	ENST00000376228.5:c.359A>C	p.Gln120Pro	p.Q120P	ENST00000376228	NM_002117.5	120	cAg/cCg																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43739049	43739049	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	128	345	0	ENST00000523873.1:c.66G>T	p.Lys22Asn	p.K22N	ENST00000523873		22	aaG/aaT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104723	69104723	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200083700		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	254	344	1	ENST00000288368.4:c.4567G>A	p.Ala1523Thr	p.A1523T	ENST00000288368	NM_024870.2	1523	Gcc/Acc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87549089	87549089	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	78	304	0	ENST00000277120.3:c.1646T>A	p.Ile549Asn	p.I549N	ENST00000277120		549	aTc/aAc																																																																															
FANCC	2176	MSKCC	GRCh37	9	97869464	97869464	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	134	354	0	ENST00000289081.3:c.1417C>A	p.Gln473Lys	p.Q473K	ENST00000289081	NM_000136.2	473	Cag/Aag																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317419	1317419	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	95	244	0				ENST00000381566																																																																																		
MED12	9968	MSKCC	GRCh37	X	70349583	70349583	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1422779785		P-0067107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	142	204	0	ENST00000374080.3:c.3745C>T	p.Leu1249Phe	p.L1249F	ENST00000374080		1249	Ctt/Ttt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65310541	65310541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	124	714	0	ENST00000342505.4:c.2147G>A	p.Cys716Tyr	p.C716Y	ENST00000342505	NM_002227.2	716	tGt/tAt																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589698	69589698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	137	1076	0	ENST00000168712.1:c.155C>T	p.Ala52Val	p.A52V	ENST00000168712	NM_002007.2	52	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420661	49420661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	122	743	0	ENST00000301067.7:c.15088C>T	p.Arg5030Cys	p.R5030C	ENST00000301067	NM_003482.3	5030	Cgt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	100	848	0	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	76	718	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	110	732	11	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	114	690	4	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	171	731	5	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993014	72993014	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	117	750	0	ENST00000268489.5:c.1031del	p.Asn344ThrfsTer8	p.N344Tfs*8	ENST00000268489	NM_006885.3	344	aAc/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	98	611	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	90	805	0	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	131	798	2	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144113	11144113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	117	717	0	ENST00000358026.2:c.3694G>A	p.Gly1232Ser	p.G1232S	ENST00000358026	NM_001128849.1	1232	Ggc/Agc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299079	15299079	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1284132838		P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	92	603	1	ENST00000263388.2:c.1459C>T	p.Arg487Ter	p.R487*	ENST00000263388	NM_000435.2	487	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223649	36223649	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs533229757		P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	117	852	3	ENST00000222270.7:c.6199G>A	p.Gly2067Ser	p.G2067S	ENST00000222270	NM_014727.1	2067	Ggc/Agc																																																																															
CIC	23152	MSKCC	GRCh37	19	42794440	42794441	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	85	717	0	ENST00000575354.2:c.1526dup	p.Leu510ThrfsTer4	p.L510Tfs*4	ENST00000575354	NM_015125.3	507	cgc/cgCc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	76	761	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403206	213403206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	83	629	0	ENST00000342788.4:c.49G>A	p.Ala17Thr	p.A17T	ENST00000342788	NM_005235.2	17	Gcg/Acg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	99	855	5	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231792	36231792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			736	123	761	0	ENST00000300305.3:c.592G>A	p.Asp198Asn	p.D198N	ENST00000300305		198	Gat/Aat																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845287	42845287	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	92	718	0	ENST00000398585.3:c.975del	p.Glu326SerfsTer4	p.E326Sfs*4	ENST00000398585	NM_001135099.1	325	ccC/cc																																																																															
EP300	2033	MSKCC	GRCh37	22	41566432	41566432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	96	531	0	ENST00000263253.7:c.4309G>A	p.Ala1437Thr	p.A1437T	ENST00000263253	NM_001429.3	1437	Gca/Aca																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434182	12434182	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1187529076		P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	91	565	1	ENST00000287820.6:c.556del	p.Ser186ValfsTer47	p.S186Vfs*47	ENST00000287820	NM_015869.4	184	Aaa/aa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534269	187534269	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1401735284		P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	76	577	0	ENST00000441802.2:c.9457G>A	p.Asp3153Asn	p.D3153N	ENST00000441802	NM_005245.3	3153	Gac/Aac																																																																															
FLT4	2324	MSKCC	GRCh37	5	180052992	180052992	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	116	882	0	ENST00000261937.6:c.1298G>T	p.Ser433Ile	p.S433I	ENST00000261937	NM_182925.4	433	aGc/aTc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	98	831	1	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43748539	43748539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367571103		P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	118	663	0	ENST00000523873.1:c.493G>A	p.Val165Met	p.V165M	ENST00000523873		165	Gtg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273263	55273263	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1379387764		P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	107	669	0	ENST00000275493.2:c.3586G>A	p.Glu1196Lys	p.E1196K	ENST00000275493	NM_005228.3	1196	Gaa/Aaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945048	151945048	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780852959		P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	13	263	0	ENST00000262189.6:c.2471G>A	p.Gly824Asp	p.G824D	ENST00000262189	NM_170606.2	824	gGc/gAc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372093	55372093	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	86	765	1	ENST00000297316.4:c.788del	p.Pro263ArgfsTer124	p.P263Rfs*124	ENST00000297316	NM_022454.3	261	ggC/gg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372202	55372202	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764648837		P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	103	797	0	ENST00000297316.4:c.892G>A	p.Gly298Ser	p.G298S	ENST00000297316	NM_022454.3	298	Ggc/Agc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8331723	8331723	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367558329		P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	88	548	0	ENST00000356435.5:c.5393G>A	p.Arg1798Gln	p.R1798Q	ENST00000356435		1798	cGa/cAa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258365	16258365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	93	796	0	ENST00000375759.3:c.5630G>T	p.Arg1877Met	p.R1877M	ENST00000375759	NM_015001.2	1877	aGg/aTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258371	16258371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	87	797	0	ENST00000375759.3:c.5636C>T	p.Ala1879Val	p.A1879V	ENST00000375759	NM_015001.2	1879	gCt/gTt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458755	120458755	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	111	781	0	ENST00000256646.2:c.6590A>G	p.His2197Arg	p.H2197R	ENST00000256646	NM_024408.3	2197	cAt/cGt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176015428	176015428	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1373217036		P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	46	418	2	ENST00000367669.3:c.1310C>T	p.Ala437Val	p.A437V	ENST00000367669	NM_022457.5	437	gCg/gTg																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230493045	230493045	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	118	702	0	ENST00000525115.1:c.147del	p.Ser50AlafsTer44	p.S50Afs*44	ENST00000525115		49	ccC/cc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64128955	64128957	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs772657234		P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	111	775	0	ENST00000334205.4:c.587_589del	p.Ser196del	p.S196del	ENST00000334205	NM_003942.2	195	ttCTCc/ttc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373220	118373220	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	115	661	0	ENST00000534358.1:c.6616del	p.Gln2206SerfsTer7	p.Q2206Sfs*7	ENST00000534358	NM_005933.3	2205	Ccc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398283	25398284	+	missense_variant	Missense_Mutation	DNP	AC	AC	CA			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	107	386	0	ENST00000256078.4:c.35_36delinsTG	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGT/gTG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421875	49421875	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	94	789	0	ENST00000301067.7:c.14432T>C	p.Ile4811Thr	p.I4811T	ENST00000301067	NM_003482.3	4811	aTc/aCc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431294	49431294	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	117	760	0	ENST00000301067.7:c.9845A>G	p.Gln3282Arg	p.Q3282R	ENST00000301067	NM_003482.3	3282	cAg/cGg																																																																															
POLE	5426	MSKCC	GRCh37	12	133210942	133210942	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	87	671	0	ENST00000320574.5:c.5834del	p.Gly1945GlufsTer54	p.G1945Efs*54	ENST00000320574	NM_006231.2	1945	gGa/ga																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640516	3640516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	107	864	0	ENST00000294008.3:c.3123G>T	p.Gln1041His	p.Q1041H	ENST00000294008	NM_032444.2	1041	caG/caT																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38798715	38798715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	96	404	0	ENST00000348513.6:c.148C>T	p.Arg50Trp	p.R50W	ENST00000348513	NM_003079.4	50	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492882	56492883	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GCCATCAGCAGCCAGGGCCAGAG			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	144	778	0	ENST00000407977.2:c.34_56dup	p.Thr20SerfsTer6	p.T20Sfs*6	ENST00000407977		19	gct/gcCTCTGGCCCTGGCTGCTGATGGCt																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770066	56770066	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	194	673	0	ENST00000337432.4:c.62C>A	p.Pro21Gln	p.P21Q	ENST00000337432	NM_058216.2	21	cCa/cAa																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61324180	61324180	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	119	746	1	ENST00000283752.5:c.653C>A	p.Ser218Tyr	p.S218Y	ENST00000283752	NM_006919.2	218	tCt/tAt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918168	50918168	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	103	647	0	ENST00000440232.2:c.2485C>A	p.Leu829Met	p.L829M	ENST00000440232	NM_002691.3	829	Ctg/Atg																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22162044	22162044	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	116	637	0	ENST00000215832.6:c.211G>T	p.Glu71Ter	p.E71*	ENST00000215832	NM_002745.4	71	Gag/Tag																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29280037	29280037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	77	843	0	ENST00000544604.2:c.283G>A	p.Glu95Lys	p.E95K	ENST00000544604	NM_001206998.1	95	Gag/Aag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873058	134873058	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	95	641	0	ENST00000398015.3:c.1362G>C	p.Trp454Cys	p.W454C	ENST00000398015	NM_004441.4	454	tgG/tgC																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1805422	1805422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	72	577	0	ENST00000260795.2:c.934G>A	p.Ala312Thr	p.A312T	ENST00000260795		312	Gcg/Acg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535343	66535343	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	73	731	0	ENST00000273854.3:c.118del	p.Leu40SerfsTer22	p.L40Sfs*22	ENST00000273854	NM_004439.5	40	Ctc/tc																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383944	84383944	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	80	544	0	ENST00000321945.7:c.908del	p.Asn303IlefsTer17	p.N303Ifs*17	ENST00000321945	NM_139076.2	303	aAt/at																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630546	187630546	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	125	728	0	ENST00000441802.2:c.436A>T	p.Arg146Ter	p.R146*	ENST00000441802	NM_005245.3	146	Aga/Tga																																																																															
TERT	7015	MSKCC	GRCh37	5	1296526	1296526	+	upstream_gene_variant	5'Flank	DEL	T	T	-			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			60	17	83	0				ENST00000310581	NM_198253.2																																																																																	
HLA-B	3106	MSKCC	GRCh37	6	31324861	31324861	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			688	137	924	0	ENST00000412585.2:c.73+2T>C		p.X25_splice	ENST00000412585	NM_005514.6	25																																																																																
PARK2	5071	MSKCC	GRCh37	6	161970019	161970019	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	78	470	0	ENST00000366898.1:c.950A>T	p.Gln317Leu	p.Q317L	ENST00000366898	NM_004562.2	317	cAg/cTg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2039712	2039712	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750798867		P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	109	768	0	ENST00000349721.2:c.602C>T	p.Thr201Met	p.T201M	ENST00000349721	NM_003070.3	201	aCg/aTg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300081	137300081	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	69	619	0	ENST00000481739.1:c.369del	p.Ser124GlnfsTer44	p.S124Qfs*44	ENST00000481739	NM_002957.4	122	caC/ca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390879	139390879	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1163865960		P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	104	797	0	ENST00000277541.6:c.7312C>T	p.Pro2438Ser	p.P2438S	ENST00000277541	NM_017617.3	2438	Ccg/Tcg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933752	39933752	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367848648		P-0067143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	112	434	0	ENST00000378444.4:c.847G>A	p.Ala283Thr	p.A283T	ENST00000378444	NM_001123385.1	283	Gca/Aca																																																																															
RB1	5925	MSKCC	GRCh37	13	48955550	48955550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913304		P-0067149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			60	100	361	0	ENST00000267163.4:c.1666C>T	p.Arg556Ter	p.R556*	ENST00000267163	NM_000321.2	556	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0067149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	171	461	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244184	153244184	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759610249		P-0067149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	260	600	0	ENST00000281708.4:c.1973G>A	p.Arg658Gln	p.R658Q	ENST00000281708	NM_033632.3	658	cGa/cAa																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814713	139814713	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753016580		P-0067149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	253	600	0	ENST00000247668.2:c.706G>A	p.Glu236Lys	p.E236K	ENST00000247668	NM_021138.3	236	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578499	7578499	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs786203071		P-0067149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	583	651	0	ENST00000269305.4:c.431A>C	p.Gln144Pro	p.Q144P	ENST00000269305	NM_001126112.2	144	cAg/cCg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524401	187524401	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0067149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	40	530	0	ENST00000441802.2:c.11279C>G	p.Ser3760Ter	p.S3760*	ENST00000441802	NM_005245.3	3760	tCa/tGa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324875	31324875	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1231905919		P-0067149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	325	533	0	ENST00000412585.2:c.61G>T	p.Glu21Ter	p.E21*	ENST00000412585	NM_005514.6	21	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445893	49445893	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0067149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	272	726	0	ENST00000301067.7:c.1573G>T	p.Glu525Ter	p.E525*	ENST00000301067	NM_003482.3	525	Gag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11106925	11106925	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	266	634	0	ENST00000344626.4:c.1630C>G	p.Gln544Glu	p.Q544E	ENST00000344626	NM_003072.3	544	Cag/Gag																																																																															
HGF	3082	MSKCC	GRCh37	7	81334972	81334972	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	104	466	0	ENST00000222390.5:c.1855T>A	p.Tyr619Asn	p.Y619N	ENST00000222390	NM_000601.4	619	Tac/Aac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892239	9892239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1335	181	569	0	ENST00000330684.3:c.2251G>T	p.Gly751Trp	p.G751W	ENST00000330684	NM_001134407.1	751	Ggg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108117824	108117824	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	106	384	0	ENST00000278616.4:c.1035G>C	p.Leu345Phe	p.L345F	ENST00000278616	NM_000051.3	345	ttG/ttC																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023699	31023699	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776213974		P-0067149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1848	191	551	0	ENST00000375687.4:c.3184C>T	p.Pro1062Ser	p.P1062S	ENST00000375687	NM_015338.5	1062	Cct/Tct																																																																															
CCND2	894	MSKCC	GRCh37	12	4383367	4383367	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	220	516	0	ENST00000261254.3:c.161A>G	p.Tyr54Cys	p.Y54C	ENST00000261254	NM_001759.3	54	tAc/tGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859850	151859850	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	203	623	0	ENST00000262189.6:c.10812G>C	p.Lys3604Asn	p.K3604N	ENST00000262189	NM_170606.2	3604	aaG/aaC																																																																															
EP300	2033	MSKCC	GRCh37	22	41565520	41565520	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	126	377	0	ENST00000263253.7:c.4186T>C	p.Ser1396Pro	p.S1396P	ENST00000263253	NM_001429.3	1396	Tct/Cct																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572246	64572246	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	272	809	0	ENST00000337652.1:c.1408G>T	p.Ala470Ser	p.A470S	ENST00000337652	NM_130803.2	470	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0067183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	22	481	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0067183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	123	431	0	ENST00000275493.2:c.2303_2311dup	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600417	10600417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067185-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			727	15	508	0	ENST00000171111.5:c.1438G>T	p.Gly480Trp	p.G480W	ENST00000171111	NM_203500.1	480	Ggg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445170	49445170	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0067186-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			727	89	536	0	ENST00000301067.7:c.2296G>T	p.Glu766Ter	p.E766*	ENST00000301067	NM_003482.3	766	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	334	258	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043381	180043381	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760077499		P-0069874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	249	490	0	ENST00000261937.6:c.3205G>A	p.Val1069Ile	p.V1069I	ENST00000261937	NM_182925.4	1069	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576920	7576923	+	frameshift_variant	Frame_Shift_Del	DEL	GGCA	GGCA	-			P-0069874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	308	468	0	ENST00000269305.4:c.923_926del	p.Leu308ProfsTer36	p.L308Pfs*36	ENST00000269305	NM_001126112.2	308	cTGCCc/cc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691838	30691838	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	246	457	2	ENST00000359013.4:c.415G>T	p.Glu139Ter	p.E139*	ENST00000359013	NM_001024847.2	139	Gaa/Taa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929093	44929100	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGCACA	CAGGCACA	-			P-0069874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	180	309	0	ENST00000377967.4:c.2194_2201del	p.Arg732TrpfsTer5	p.R732Wfs*5	ENST00000377967	NM_021140.2	731	agCAGGCACAct/agct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0070994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	407	397	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0070994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	112	327	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118362012	118362012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	102	435	0	ENST00000534358.1:c.4798G>A	p.Glu1600Lys	p.E1600K	ENST00000534358	NM_005933.3	1600	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	74	314	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919725	50919725	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	156	533	0	ENST00000440232.2:c.2893C>A	p.Pro965Thr	p.P965T	ENST00000440232	NM_002691.3	965	Ccc/Acc																																																																															
CDH1	999	MSKCC	GRCh37	16	68844098	68844098	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0070994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	139	375	0	ENST00000261769.5:c.688-2A>T		p.X230_splice	ENST00000261769	NM_004360.3	230																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118362563	118362563	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	175	410	0	ENST00000534358.1:c.4924G>C	p.Glu1642Gln	p.E1642Q	ENST00000534358	NM_005933.3	1642	Gag/Cag																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029302	14029302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	136	503	0	ENST00000311895.7:c.1513G>A	p.Glu505Lys	p.E505K	ENST00000311895	NM_005236.2	505	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68867305	68867305	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	141	429	0	ENST00000261769.5:c.2552C>A	p.Ser851Ter	p.S851*	ENST00000261769	NM_004360.3	851	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0071513-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	199	406	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274848	41274848	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0071513-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	121	382	1	ENST00000349496.5:c.1098A>C	p.Leu366Phe	p.L366F	ENST00000349496	NM_001904.3	366	ttA/ttC																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244100	5244100	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1174113999		P-0071899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	22	407	0	ENST00000357368.4:c.1382G>A	p.Arg461His	p.R461H	ENST00000357368	NM_002850.3	461	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	11	254	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29557277	29557277	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0071899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	16	271	0	ENST00000358273.4:c.2991-1G>T		p.X997_splice	ENST00000358273	NM_001042492.2	997																																																																																
SPOP	8405	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519967		P-0071952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	22	397	0	ENST00000347630.2:c.398T>G	p.Phe133Cys	p.F133C	ENST00000347630	NM_001007230.1	133	tTc/tGc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274789	123274789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	17	411	0	ENST00000358487.5:c.1129G>A	p.Glu377Lys	p.E377K	ENST00000358487	NM_000141.4	377	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0070793-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			424	8	0	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101252	27101252	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071703-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	187	404	0	ENST00000324856.7:c.4534del	p.Gln1512ArgfsTer15	p.Q1512Rfs*15	ENST00000324856	NM_006015.4	1512	Cag/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071703-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	158	229	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs863223300		P-0071703-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	200	480	0	ENST00000269305.4:c.532del	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971099	21971099	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071703-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	173	369	0	ENST00000304494.5:c.259del	p.Arg87GlyfsTer59	p.R87Gfs*59	ENST00000304494	NM_000077.4	87	Cgg/gg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715715	30715723	+	inframe_deletion	In_Frame_Del	DEL	CATCTCGCT	CATCTCGCT	-			P-0071703-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	255	396	0	ENST00000359013.4:c.1448_1456del	p.Thr483_Cys486delinsSer	p.T483_C486delinsS	ENST00000359013	NM_001024847.2	483	aCATCTCGCTgt/agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs876658468		P-0071940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			729	26	585	0	ENST00000269305.4:c.577C>A	p.His193Asn	p.H193N	ENST00000269305	NM_001126112.2	193	Cat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398286	+	missense_variant	Missense_Mutation	ONP	CCA	CCA	ACG			P-0071940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	15	339	0	ENST00000256078.4:c.33_35delinsCGT	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	11	gcTGGt/gcCGTt																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs869320707		P-0071947-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	152	594	0	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
ATRX	546	MSKCC	GRCh37	X	76889140	76889140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071947-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	92	378	0	ENST00000373344.5:c.4870G>A	p.Val1624Met	p.V1624M	ENST00000373344	NM_000489.3	1624	Gtg/Atg																																																																															
ATM	472	MSKCC	GRCh37	11	108224607	108224607	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0071947-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	68	360	0	ENST00000278616.4:c.8786G>C	p.Arg2929Thr	p.R2929T	ENST00000278616	NM_000051.3	2929	aGa/aCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0070260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	37	198	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	10	295	0	ENST00000397062.3:c.101G>C	p.Arg34Pro	p.R34P	ENST00000397062	NM_006164.4	34	cGa/cCa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32915060	32915060	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80358888		P-0070260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	40	366	0	ENST00000380152.3:c.6568G>A	p.Val2190Ile	p.V2190I	ENST00000380152		2190	Gta/Ata																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	58	308	0	ENST00000397062.3:c.92G>C	p.Gly31Ala	p.G31A	ENST00000397062	NM_006164.4	31	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863224683		P-0070260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	87	334	0	ENST00000269305.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000269305	NM_001126112.2	130	Ctc/Ttc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692884	89692884	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121909222		P-0070260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	32	170	0	ENST00000371953.3:c.368A>G	p.His123Arg	p.H123R	ENST00000371953	NM_000314.4	123	cAc/cGc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123220516	123220516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	39	264	0	ENST00000218089.9:c.3173C>T	p.Ser1058Leu	p.S1058L	ENST00000218089	NM_001042749.1	1058	tCa/tTa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974701	21974701	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	57	366	0	ENST00000304494.5:c.126T>G	p.Asn42Lys	p.N42K	ENST00000304494	NM_000077.4	42	aaT/aaG																																																																															
STAG2	10735	MSKCC	GRCh37	X	123220483	123220483	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	43	287	0	ENST00000218089.9:c.3140C>G	p.Ser1047Cys	p.S1047C	ENST00000218089	NM_001042749.1	1047	tCt/tGt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52662944	52662944	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs781546758		P-0070260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	51	298	0	ENST00000394830.3:c.1409A>G	p.Tyr470Cys	p.Y470C	ENST00000394830	NM_018313.4	470	tAc/tGc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763386	59763386	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	25	373	0	ENST00000259008.2:c.2716G>C	p.Glu906Gln	p.E906Q	ENST00000259008	NM_032043.2	906	Gag/Cag																																																																															
NBN	4683	MSKCC	GRCh37	8	90993036	90993036	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	62	293	0	ENST00000265433.3:c.406G>T	p.Gly136Ter	p.G136*	ENST00000265433	NM_002485.4	136	Gga/Tga																																																																															
BARD1	580	MSKCC	GRCh37	2	215617262	215617262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	69	232	0	ENST00000260947.4:c.1586G>T	p.Arg529Leu	p.R529L	ENST00000260947	NM_000465.2	529	cGg/cTg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763201	59763201	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	23	324	0	ENST00000259008.2:c.2901G>T	p.Glu967Asp	p.E967D	ENST00000259008	NM_032043.2	967	gaG/gaT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212589874	212589874	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	45	309	0	ENST00000342788.4:c.668G>T	p.Gly223Val	p.G223V	ENST00000342788	NM_005235.2	223	gGa/gTa																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976218	18976218	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1258819927		P-0070260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	59	401	0	ENST00000262803.5:c.2978C>T	p.Pro993Leu	p.P993L	ENST00000262803	NM_002911.3	993	cCa/cTa																																																																															
MPL	4352	MSKCC	GRCh37	1	43804358	43804358	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	25	318	0	ENST00000372470.3:c.358C>G	p.Arg120Gly	p.R120G	ENST00000372470	NM_005373.2	120	Cgg/Ggg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691912	30691912	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	53	385	0	ENST00000359013.4:c.489T>G	p.Cys163Trp	p.C163W	ENST00000359013	NM_001024847.2	163	tgT/tgG																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41239972	41239973	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	A			P-0070260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	18	181	0	ENST00000379561.5:c.377_378delinsT	p.Pro126LeufsTer207	p.P126Lfs*207	ENST00000379561	NM_002015.3	126	cCG/cT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444932	49444933	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	A			P-0070260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	30	406	0	ENST00000301067.7:c.2533_2534delinsT	p.Arg845CysfsTer85	p.R845Cfs*85	ENST00000301067	NM_003482.3	845	CGg/Tg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86665655	86665655	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070513-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	29	166	0	ENST00000274376.6:c.1636C>T	p.Gln546Ter	p.Q546*	ENST00000274376	NM_002890.2	546	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27059213	27059213	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0070513-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	100	252	0	ENST00000324856.7:c.1850C>G	p.Ser617Ter	p.S617*	ENST00000324856	NM_006015.4	617	tCa/tGa																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231474280	231474280	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070513-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			962	170	364	0	ENST00000295050.7:c.151C>T	p.Gln51Ter	p.Q51*	ENST00000295050	NM_032018.5	51	Cag/Tag																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569873	95569873	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0070513-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	150	380	0	ENST00000343455.3:c.3860C>G	p.Ser1287Ter	p.S1287*	ENST00000343455	NM_177438.2	1287	tCa/tGa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871029	12871029	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070513-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	162	390	0	ENST00000228872.4:c.256G>C	p.Glu86Gln	p.E86Q	ENST00000228872	NM_004064.3	86	Gag/Cag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63845477	63845477	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070513-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	96	251	0	ENST00000279873.7:c.1216G>C	p.Glu406Gln	p.E406Q	ENST00000279873	NM_032199.2	406	Gaa/Caa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117859	70117859	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070513-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	146	374	1	ENST00000245479.2:c.327G>C	p.Met109Ile	p.M109I	ENST00000245479	NM_000346.3	109	atG/atC																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62325725	62325725	+	missense_variant,splice_region_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A			P-0070513-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	93	236	0	ENST00000482936.1:c.2993G>A	p.Gly998Glu	p.G998E	ENST00000482936		998	gGa/gAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29676190	29676191	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0070513-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	87	266	0	ENST00000358273.4:c.7243dup	p.Thr2415AsnfsTer7	p.T2415Nfs*7	ENST00000358273	NM_001042492.2	2414	-/A																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906800	32906800	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs886039315		P-0071064-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			280	86	294	0	ENST00000380152.3:c.1185G>T	p.Trp395Cys	p.W395C	ENST00000380152		395	tgG/tgT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs17849781		P-0071064-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			497	229	308	0	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act																																																																															
RASA1	5921	MSKCC	GRCh37	5	86649021	86649021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071064-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			182	19	111	0	ENST00000274376.6:c.1301G>A	p.Gly434Glu	p.G434E	ENST00000274376	NM_002890.2	434	gGa/gAa																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625320	69625320	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071064-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			597	81	331	0	ENST00000334134.2:c.473A>G	p.Asn158Ser	p.N158S	ENST00000334134	NM_005247.2	158	aAc/aGc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117411	115117411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071064-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			421	112	315	0	ENST00000257566.3:c.763G>A	p.Val255Ile	p.V255I	ENST00000257566	NM_016569.3	255	Gta/Ata																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416896	121416896	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0071064-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			498	152	289	0	ENST00000257555.6:c.325C>G	p.Gln109Glu	p.Q109E	ENST00000257555		109	Cag/Gag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883153	37883153	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071064-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			903	49	338	0	ENST00000269571.5:c.3056A>G	p.Asp1019Gly	p.D1019G	ENST00000269571		1019	gAt/gGt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223254	5223254	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071064-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			463	153	308	0	ENST00000357368.4:c.2549C>G	p.Ala850Gly	p.A850G	ENST00000357368	NM_002850.3	850	gCa/gGa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981464	70981464	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071064-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			617	107	362	0	ENST00000276594.2:c.632C>G	p.Pro211Arg	p.P211R	ENST00000276594	NM_024504.3	211	cCc/cGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0071345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	48	401	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0071345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	58	410	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
TP53	7157	MSKCC	GRCh37	17	7579716	7579716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1192416464		P-0071364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			104	355	384	0	ENST00000269305.4:c.80del	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	27	cCt/ct																																																																															
BARD1	580	MSKCC	GRCh37	2	215645426	215645426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			321	86	444	0	ENST00000260947.4:c.1172C>T	p.Ser391Leu	p.S391L	ENST00000260947	NM_000465.2	391	tCa/tTa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807887	3807887	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			413	184	388	0	ENST00000262367.5:c.3532T>C	p.Cys1178Arg	p.C1178R	ENST00000262367	NM_004380.2	1178	Tgc/Cgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436909	49436909	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886049481		P-0071364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			547	127	389	0	ENST00000301067.7:c.5594C>T	p.Thr1865Ile	p.T1865I	ENST00000301067	NM_003482.3	1865	aCc/aTc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43700194	43700194	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			437	147	343	0	ENST00000382044.4:c.5693T>A	p.Met1898Lys	p.M1898K	ENST00000382044	NM_001141980.1	1898	aTg/aAg																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225533	26225533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			630	235	677	0	ENST00000360408.1:c.151G>A	p.Glu51Lys	p.E51K	ENST00000360408	NM_003532.2	51	Gag/Aag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028665	12028665	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	39	442	0	ENST00000353533.5:c.868G>T	p.Val290Phe	p.V290F	ENST00000353533	NM_003010.3	290	Gtc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	59	302	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7573995	7574004	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCTCTCGG	CAGCTCTCGG	-			P-0071878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	34	361	0	ENST00000269305.4:c.1023_1032del	p.Phe341LeufsTer26	p.F341Lfs*26	ENST00000269305	NM_001126112.2	341	ttCCGAGAGCTG/tt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0071905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	21	365	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	64	346	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914210	32914211	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs80359530		P-0071909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	43	437	1	ENST00000380152.3:c.5722_5723del	p.Leu1908ArgfsTer2	p.L1908Rfs*2	ENST00000380152		1906	aaCTct/aact																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492817	56492817	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0071909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	308	632	0	ENST00000407977.2:c.122C>A	p.Ser41Ter	p.S41*	ENST00000407977		41	tCa/tAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604783	48604825	+	frameshift_variant	Frame_Shift_Del	DEL	CCTAGACGAAGTACTTCATACCATGCCGATTGCAGACCCACAA	CCTAGACGAAGTACTTCATACCATGCCGATTGCAGACCCACAA	-			P-0071909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	88	570	0	ENST00000342988.3:c.1608_1650del	p.Asp537Ter	p.D537*	ENST00000342988	NM_005359.5	535	ctCCTAGACGAAGTACTTCATACCATGCCGATTGCAGACCCACAA/ct																																																																															
SESN1	27244	MSKCC	GRCh37	6	109415224	109415224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	20	511	0	ENST00000436639.2:c.53C>T	p.Ser18Leu	p.S18L	ENST00000436639	NM_014454.2	18	tCa/tTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	32	208	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PAK1	5058	MSKCC	GRCh37	11	77051717	77051717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	47	371	0	ENST00000356341.3:c.1090G>T	p.Gly364Cys	p.G364C	ENST00000356341	NM_002576.4	364	Ggc/Tgc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680690	88680690	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0071926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	28	304	0	ENST00000360948.2:c.567C>A	p.Cys189Ter	p.C189*	ENST00000360948	NM_001012338.2	189	tgC/tgA																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61328360	61328360	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	12	114	0	ENST00000283752.5:c.91C>A	p.Pro31Thr	p.P31T	ENST00000283752	NM_006919.2	31	Cct/Act																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2161818	2161818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	62	392	0	ENST00000349721.2:c.4114C>T	p.Pro1372Ser	p.P1372S	ENST00000349721	NM_003070.3	1372	Ccc/Tcc																																																																															
MTAP	4507	MSKCC	GRCh37	9	21854842	21854842	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0071926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	50	351	0	ENST00000380172.4:c.663T>A	p.Tyr221Ter	p.Y221*	ENST00000380172	NM_002451.3	221	taT/taA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	258	516	2	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
TET1	80312	MSKCC	GRCh37	10	70451272	70451272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	277	464	0	ENST00000373644.4:c.6112C>T	p.Arg2038Cys	p.R2038C	ENST00000373644	NM_030625.2	2038	Cgt/Tgt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162737036	162737036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	142	397	0	ENST00000367921.3:c.1180G>A	p.Asp394Asn	p.D394N	ENST00000367921	NM_006182.2	394	Gat/Aat																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010560	48010560	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587779920		P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	38	383	0	ENST00000234420.5:c.188C>G	p.Ser63Cys	p.S63C	ENST00000234420	NM_000179.2	63	tCc/tGc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52675999	52675999	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	55	351	0	ENST00000394830.3:c.1058C>G	p.Ser353Ter	p.S353*	ENST00000394830	NM_018313.4	353	tCa/tGa																																																																															
WT1	7490	MSKCC	GRCh37	11	32439175	32439175	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	151	383	0	ENST00000332351.3:c.898C>T	p.Gln300Ter	p.Q300*	ENST00000332351	NM_024426.4	300	Cag/Tag																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288324	33288324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749468991		P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	84	449	0	ENST00000374542.5:c.1084C>T	p.Arg362Trp	p.R362W	ENST00000374542	NM_001141970.1	362	Cgg/Tgg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165321	47165321	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	174	422	3	ENST00000409792.3:c.805C>G	p.Gln269Glu	p.Q269E	ENST00000409792	NM_014159.6	269	Caa/Gaa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61705972	61705972	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	41	349	0	ENST00000401558.2:c.3199G>C	p.Glu1067Gln	p.E1067Q	ENST00000401558	NM_003400.3	1067	Gaa/Caa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231700	66231700	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	133	385	0	ENST00000273854.3:c.2000C>A	p.Ala667Asp	p.A667D	ENST00000273854	NM_004439.5	667	gCt/gAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32968933	32968933	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	79	425	1	ENST00000380152.3:c.9364G>C	p.Ala3122Pro	p.A3122P	ENST00000380152		3122	Gca/Cca																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509804	106509804	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	171	460	3	ENST00000359195.3:c.1798C>G	p.Gln600Glu	p.Q600E	ENST00000359195	NM_002649.2	600	Cag/Gag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89818610	89818610	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	96	434	0	ENST00000389301.3:c.3002C>G	p.Ser1001Ter	p.S1001*	ENST00000389301	NM_000135.2	1001	tCa/tGa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100796	8100796	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	100	436	0	ENST00000346208.3:c.770C>G	p.Ser257Cys	p.S257C	ENST00000346208		257	tCc/tGc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390072	89390072	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	121	357	0	ENST00000336596.2:c.821G>C	p.Arg274Pro	p.R274P	ENST00000336596	NM_005233.5	274	cGa/cCa																																																																															
PAK1	5058	MSKCC	GRCh37	11	77051758	77051758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	203	463	0	ENST00000356341.3:c.1049G>T	p.Gly350Val	p.G350V	ENST00000356341	NM_002576.4	350	gGc/gTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405158	139405158	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	163	459	0	ENST00000277541.6:c.2687del	p.Gln896ArgfsTer283	p.Q896Rfs*283	ENST00000277541	NM_017617.3	896	cAg/cg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859516	151859516	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	138	555	0	ENST00000262189.6:c.11146G>T	p.Glu3716Ter	p.E3716*	ENST00000262189	NM_170606.2	3716	Gaa/Taa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020348	69020348	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	54	314	0	ENST00000288368.4:c.2720C>G	p.Ser907Cys	p.S907C	ENST00000288368	NM_024870.2	907	tCt/tGt																																																																															
TET2	54790	MSKCC	GRCh37	4	106157017	106157017	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	107	532	0	ENST00000380013.4:c.1918C>G	p.Gln640Glu	p.Q640E	ENST00000380013	NM_001127208.2	640	Caa/Gaa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097590	11097590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	207	435	0	ENST00000344626.4:c.770G>T	p.Gly257Val	p.G257V	ENST00000344626	NM_003072.3	257	gGg/gTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023546	31023546	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	60	390	0	ENST00000375687.4:c.3031G>T	p.Glu1011Ter	p.E1011*	ENST00000375687	NM_015338.5	1011	Gag/Tag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507399	8507399	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	74	358	0	ENST00000356435.5:c.1579G>T	p.Glu527Ter	p.E527*	ENST00000356435		527	Gag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108139307	108139307	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	74	320	1	ENST00000278616.4:c.2809G>C	p.Glu937Gln	p.E937Q	ENST00000278616	NM_000051.3	937	Gaa/Caa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576227	88576227	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	319	407	0	ENST00000360948.2:c.1446C>G	p.His482Gln	p.H482Q	ENST00000360948	NM_001012338.2	482	caC/caG																																																																															
TP53	7157	MSKCC	GRCh37	17	7579716	7579716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1192416464		P-0071928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	167	305	0	ENST00000269305.4:c.80del	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	27	cCt/ct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	433	257	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267518	198267518	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	147	425	0	ENST00000335508.6:c.1839G>T	p.Met613Ile	p.M613I	ENST00000335508	NM_012433.2	613	atG/atT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125852	47125852	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	83	299	0	ENST00000409792.3:c.5418C>G	p.His1806Gln	p.H1806Q	ENST00000409792	NM_014159.6	1806	caC/caG																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0071955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	393	300	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
ATM	472	MSKCC	GRCh37	11	108170479	108170479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	84	292	0	ENST00000278616.4:c.5044G>T	p.Asp1682Tyr	p.D1682Y	ENST00000278616	NM_000051.3	1682	Gat/Tat																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680683	88680683	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	72	276	0	ENST00000360948.2:c.574G>T	p.Ala192Ser	p.A192S	ENST00000360948	NM_001012338.2	192	Gct/Tct																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67358521	67358521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	39	392	0	ENST00000327367.4:c.29C>T	p.Pro10Leu	p.P10L	ENST00000327367	NM_005902.3	10	cCg/cTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692819	89692819	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	19	141	0	ENST00000371953.3:c.303C>G	p.Ile101Met	p.I101M	ENST00000371953	NM_000314.4	101	atC/atG																																																																															
ALK	238	MSKCC	GRCh37	2	29551215	29551215	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs777414641		P-0071955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	97	386	0	ENST00000389048.3:c.1414+1G>A		p.X472_splice	ENST00000389048	NM_004304.4	472																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120462858	120462858	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	41	324	0	ENST00000256646.2:c.5473G>T	p.Gly1825Cys	p.G1825C	ENST00000256646	NM_024408.3	1825	Ggc/Tgc																																																																															
POLE	5426	MSKCC	GRCh37	12	133220063	133220063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	130	444	0	ENST00000320574.5:c.4374G>T	p.Trp1458Cys	p.W1458C	ENST00000320574	NM_006231.2	1458	tgG/tgT																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59857641	59857641	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	60	285	0	ENST00000259008.2:c.1916A>T	p.His639Leu	p.H639L	ENST00000259008	NM_032043.2	639	cAt/cTt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18272305	18272305	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0071955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	105	421	0	ENST00000222254.8:c.815G>T	p.Gly272Val	p.G272V	ENST00000222254	NM_005027.3	272	gGg/gTg																																																																															
VHL	7428	MSKCC	GRCh37	3	10183547	10183547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	55	390	0	ENST00000256474.2:c.16G>A	p.Glu6Lys	p.E6K	ENST00000256474	NM_000551.3	6	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258425	16258425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	81	455	0	ENST00000375759.3:c.5690G>A	p.Ser1897Asn	p.S1897N	ENST00000375759	NM_015001.2	1897	aGc/aAc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120529623	120529624	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0071955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	47	378	0	ENST00000256646.2:c.833_834delinsTT	p.Gly278Val	p.G278V	ENST00000256646	NM_024408.3	278	gGG/gTT																																																																															
TP63	8626	MSKCC	GRCh37	3	189526283	189526283	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	113	430	0	ENST00000264731.3:c.547C>T	p.Gln183Ter	p.Q183*	ENST00000264731	NM_003722.4	183	Cag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045663	47045681	+	frameshift_variant	Frame_Shift_Del	DEL	CGAGCAGCCTACTCGGGAC	CGAGCAGCCTACTCGGGAC	-			P-0071955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	113	218	0	ENST00000329236.7:c.2310_2328del	p.Phe770LeufsTer32	p.F770Lfs*32	ENST00000329236	NM_001204466.1	770	ttCGAGCAGCCTACTCGGGAC/tt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410546	63410546	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	143	266	0	ENST00000330258.3:c.2621G>T	p.Gly874Val	p.G874V	ENST00000330258	NM_152424.3	874	gGa/gTa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71064789	71064789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	54	324	0	ENST00000318789.4:c.885G>T	p.Glu295Asp	p.E295D	ENST00000318789	NM_032682.5	295	gaG/gaT																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67624800	67624800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	39	261	0	ENST00000272342.5:c.220G>A	p.Glu74Lys	p.E74K	ENST00000272342	NM_019002.3	74	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509885	187509885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	61	467	0	ENST00000441802.2:c.13628C>T	p.Thr4543Ile	p.T4543I	ENST00000441802	NM_005245.3	4543	aCc/aTc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40462576	40462576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	56	379	0	ENST00000345506.4:c.2274G>A	p.Met758Ile	p.M758I	ENST00000345506	NM_003152.3	758	atG/atA																																																																															
CCND3	896	MSKCC	GRCh37	6	41904302	41904302	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0071955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	302	316	0	ENST00000372991.4:c.706G>T	p.Glu236Ter	p.E236*	ENST00000372991	NM_001760.3	236	Gaa/Taa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805672	89805672	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs17227396		P-0071865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	208	343	0	ENST00000389301.3:c.4036G>A	p.Ala1346Thr	p.A1346T	ENST00000389301	NM_000135.2	1346	Gcg/Acg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31016164	31016164	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1285138418		P-0071865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	202	371	0	ENST00000375687.4:c.410C>G	p.Ser137Cys	p.S137C	ENST00000375687	NM_015338.5	137	tCt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs112445441		P-0071865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	84	221	0	ENST00000256078.4:c.38G>T	p.Gly13Val	p.G13V	ENST00000256078	NM_033360.2	13	gGc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398287	25398287	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	83	210	0	ENST00000256078.4:c.32C>G	p.Ala11Gly	p.A11G	ENST00000256078	NM_033360.2	11	gCt/gGt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131923368	131923368	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0071865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	96	290	0	ENST00000265335.6:c.871G>T	p.Glu291Ter	p.E291*	ENST00000265335		291	Gag/Tag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341094	8341094	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	32	265	0	ENST00000356435.5:c.5122T>C	p.Tyr1708His	p.Y1708H	ENST00000356435		1708	Tac/Cac																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285777	87285777	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0071865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	128	367	0	ENST00000277120.3:c.114C>A	p.Cys38Ter	p.C38*	ENST00000277120		38	tgC/tgA																																																																															
RAD50	10111	MSKCC	GRCh37	5	131911559	131911559	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	82	285	0	ENST00000265335.6:c.304T>C	p.Cys102Arg	p.C102R	ENST00000265335		102	Tgt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0071866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	202	318	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371801	55371801	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746536924		P-0071866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	97	220	0	ENST00000297316.4:c.491C>T	p.Ala164Val	p.A164V	ENST00000297316	NM_022454.3	164	gCg/gTg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31410987	31410987	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1236254462		P-0071866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	68	298	0	ENST00000344624.3:c.3533G>A	p.Arg1178Gln	p.R1178Q	ENST00000344624		1178	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	55	184	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971165	21971165	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	121	288	0	ENST00000304494.5:c.193del	p.Leu65SerfsTer81	p.L65Sfs*81	ENST00000304494	NM_000077.4	65	Ctc/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0071867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	57	349	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713469	40713469	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs528913627		P-0071867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	24	333	0	ENST00000373198.4:c.4046G>A	p.Arg1349His	p.R1349H	ENST00000373198	NM_133170.3	1349	cGt/cAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189936	66189936	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0071867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	27	204	0	ENST00000273854.3:c.3010G>T	p.Asp1004Tyr	p.D1004Y	ENST00000273854	NM_004439.5	1004	Gat/Tat																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374437	118374437	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	34	366	2	ENST00000534358.1:c.7830G>T	p.Gln2610His	p.Q2610H	ENST00000534358	NM_005933.3	2610	caG/caT																																																																															
IRF4	3662	MSKCC	GRCh37	6	401605	401605	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	38	310	0	ENST00000380956.4:c.927C>A	p.Ser309Arg	p.S309R	ENST00000380956	NM_001195286.1	309	agC/agA																																																																															
MGA	23269	MSKCC	GRCh37	15	42003479	42003479	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0071867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	46	262	0	ENST00000219905.7:c.3016G>T	p.Gly1006Ter	p.G1006*	ENST00000219905	NM_001164273.1	1006	Gga/Tga																																																																															
IDH1	3417	MSKCC	GRCh37	2	209103840	209103840	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	34	238	0	ENST00000345146.2:c.1109G>T	p.Gly370Val	p.G370V	ENST00000345146	NM_005896.2	370	gGc/gTc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528310	157528310	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	44	331	0	ENST00000346085.5:c.6035G>T	p.Trp2012Leu	p.W2012L	ENST00000346085	NM_020732.3	2012	tGg/tTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32936668	32936668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	20	225	0	ENST00000380152.3:c.7814G>A	p.Cys2605Tyr	p.C2605Y	ENST00000380152		2605	tGt/tAt																																																																															
WT1	7490	MSKCC	GRCh37	11	32456503	32456503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	15	230	0	ENST00000332351.3:c.389C>A	p.Pro130Gln	p.P130Q	ENST00000332351	NM_024426.4	130	cCa/cAa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672600	30672600	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0071867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			702	45	457	0	ENST00000376406.3:c.4360G>T	p.Glu1454Ter	p.E1454*	ENST00000376406	NM_014641.2	1454	Gag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81372698	81372698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	36	253	0	ENST00000222390.5:c.836G>T	p.Arg279Leu	p.R279L	ENST00000222390	NM_000601.4	279	cGc/cTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221960	1221962	+	stop_gained	Nonsense_Mutation	ONP	ACG	ACG	TCT			P-0071867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	63	240	0	ENST00000326873.7:c.875_877delinsTCT	p.Tyr292_Glu293delinsPheTer	p.Y292_E293delinsF*	ENST00000326873	NM_000455.4	292	tACGaa/tTCTaa																																																																															
APC	324	MSKCC	GRCh37	5	112177121	112177121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	31	483	0	ENST00000257430.4:c.5830G>A	p.Gly1944Arg	p.G1944R	ENST00000257430	NM_000038.5	1944	Ggg/Agg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680772	88680772	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	52	334	0	ENST00000360948.2:c.485T>C	p.Phe162Ser	p.F162S	ENST00000360948	NM_001012338.2	162	tTc/tCc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733237	40733237	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0071888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	32	414	0	ENST00000373198.4:c.3569del	p.Asn1190ThrfsTer15	p.N1190Tfs*15	ENST00000373198	NM_133170.3	1190	aAc/ac																																																																															
JAK1	3716	MSKCC	GRCh37	1	65332550	65332550	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0071888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	24	415	0	ENST00000342505.4:c.989del	p.Asn330MetfsTer12	p.N330Mfs*12	ENST00000342505	NM_002227.2	330	aAt/at																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645142	86645142	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071888-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			73	14	362	0	ENST00000274376.6:c.1214C>G	p.Pro405Arg	p.P405R	ENST00000274376	NM_002890.2	405	cCa/cGa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295168	1295169	+	upstream_gene_variant	5'Flank	DNP	CG	CG	TC			P-0071919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	21	433	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519989		P-0071923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	20	426	0	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																															
ABL1	25	MSKCC	GRCh37	9	133760613	133760613	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	91	642	0	ENST00000318560.5:c.2940del	p.Val981PhefsTer88	p.V981Ffs*88	ENST00000318560	NM_005157.4	979	gCc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	35	303	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47205342	47205343	+	splice_donor_variant	Splice_Site	DEL	AC	AC	-			P-0071923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	49	478	0	ENST00000409792.3:c.71+1_71+2del		p.X24_splice	ENST00000409792	NM_014159.6	24																																																																																
SETD2	29072	MSKCC	GRCh37	3	47165048	47165048	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0071923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	56	446	0	ENST00000409792.3:c.1078del	p.Ser360ValfsTer4	p.S360Vfs*4	ENST00000409792	NM_014159.6	360	Agt/gt																																																																															
POLE	5426	MSKCC	GRCh37	12	133226021	133226022	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0071923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	74	569	0	ENST00000320574.5:c.3875_3876delinsTT	p.Arg1292Ile	p.R1292I	ENST00000320574	NM_006231.2	1292	aGG/aTT																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522486	157522486	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	72	563	0	ENST00000346085.5:c.4759del	p.Val1587SerfsTer27	p.V1587Sfs*27	ENST00000346085	NM_020732.3	1586	acG/ac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16042342	16042342	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	24	325	0	ENST00000268712.3:c.1332A>T	p.Glu444Asp	p.E444D	ENST00000268712	NM_006311.3	444	gaA/gaT																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968262	134968262	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	84	480	0	ENST00000398015.3:c.2775G>T	p.Met925Ile	p.M925I	ENST00000398015	NM_004441.4	925	atG/atT																																																																															
RHOA	387	MSKCC	GRCh37	3	49405924	49405924	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	67	390	0	ENST00000418115.1:c.214del	p.Leu72SerfsTer10	p.L72Sfs*10	ENST00000418115	NM_001664.2	72	Ctc/tc																																																																															
POT1	25913	MSKCC	GRCh37	7	124503600	124503600	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	52	396	0	ENST00000357628.3:c.350G>C	p.Arg117Pro	p.R117P	ENST00000357628	NM_015450.2	117	cGc/cCc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53240998	53240998	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0071923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	51	483	0	ENST00000375401.3:c.1213A>C	p.Lys405Gln	p.K405Q	ENST00000375401	NM_004187.3	405	Aaa/Caa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390074	89390074	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	41	343	0	ENST00000336596.2:c.823C>A	p.Pro275Thr	p.P275T	ENST00000336596	NM_005233.5	275	Cca/Aca																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372467	55372467	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	86	596	0	ENST00000297316.4:c.1157T>A	p.Val386Glu	p.V386E	ENST00000297316	NM_022454.3	386	gTg/gAg																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630039	67630039	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	39	367	0	ENST00000272342.5:c.475G>C	p.Glu159Gln	p.E159Q	ENST00000272342	NM_019002.3	159	Gaa/Caa																																																																															
USP8	9101	MSKCC	GRCh37	15	50782649	50782649	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	74	492	0	ENST00000307179.4:c.2161G>T	p.Asp721Tyr	p.D721Y	ENST00000307179		721	Gat/Tat																																																																															
ABL1	25	MSKCC	GRCh37	9	133730265	133730265	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	56	475	0	ENST00000318560.5:c.331G>T	p.Val111Phe	p.V111F	ENST00000318560	NM_005157.4	111	Gtc/Ttc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029210	14029210	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	70	495	0	ENST00000311895.7:c.1421A>G	p.Asn474Ser	p.N474S	ENST00000311895	NM_005236.2	474	aAc/aGc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180055890	180055890	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	52	405	0	ENST00000261937.6:c.1095G>C	p.Glu365Asp	p.E365D	ENST00000261937	NM_182925.4	365	gaG/gaC																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619144	37619144	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0071925-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	38	219	0	ENST00000447079.4:c.820del	p.Ser274ArgfsTer64	p.S274Rfs*64	ENST00000447079	NM_015083.1	274	Tcg/cg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022491	12022492	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0071925-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	39	248	0	ENST00000396373.4:c.601dup	p.Leu201ProfsTer16	p.L201Pfs*16	ENST00000396373	NM_001987.4	199	-/C																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657670	37657672	+	frameshift_variant	Frame_Shift_Del	DEL	TCT	TCT	C			P-0071925-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	18	171	0	ENST00000447079.4:c.2587_2589delinsC	p.Ser863GlnfsTer6	p.S863Qfs*6	ENST00000447079	NM_015083.1	863	TCT/C																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0019835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			331	83	184	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591900	48591900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			354	127	288	0	ENST00000342988.3:c.1063G>T	p.Asp355Tyr	p.D355Y	ENST00000342988	NM_005359.5	355	Gac/Tac																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430597	181430597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			328	102	132	0	ENST00000325404.1:c.449G>T	p.Gly150Val	p.G150V	ENST00000325404	NM_003106.3	150	gGc/gTc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44941830	44941831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0071040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	125	129	0	ENST00000377967.4:c.3160dup	p.Arg1054LysfsTer5	p.R1054Kfs*5	ENST00000377967	NM_021140.2	1052	gaa/gAaa																																																																															
POLE	5426	MSKCC	GRCh37	12	133202313	133202313	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756301031		P-0071040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	145	440	0	ENST00000320574.5:c.6575C>T	p.Ala2192Val	p.A2192V	ENST00000320574	NM_006231.2	2192	gCg/gTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974773	21974777	+	frameshift_variant	Frame_Shift_Del	DEL	CGTGG	CGTGG	-			P-0071040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	169	492	0	ENST00000304494.5:c.50_54del	p.Ala17GlyfsTer25	p.A17Gfs*25	ENST00000304494	NM_000077.4	17	gCCACG/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	539	285	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0071743-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	48	271	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578464	7578464	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071743-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	60	549	0	ENST00000269305.4:c.466del	p.Arg156AlafsTer14	p.R156Afs*14	ENST00000269305	NM_001126112.2	156	Cgc/gc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763520	59763520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071743-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	26	284	0	ENST00000259008.2:c.2582C>T	p.Ser861Phe	p.S861F	ENST00000259008	NM_032043.2	861	tCt/tTt																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246091319	246091319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071743-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	76	354	0	ENST00000388985.4:c.616C>A	p.His206Asn	p.H206N	ENST00000388985		206	Cac/Aac																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564787	86564787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071743-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	36	527	0	ENST00000274376.6:c.519G>T	p.Leu173Phe	p.L173F	ENST00000274376	NM_002890.2	173	ttG/ttT																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966721	36966722	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0071743-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	28	329	0	ENST00000358127.4:c.605-1_605delinsTT		p.X202_splice	ENST00000358127	NM_001280556.1	202																																																																																
PPARG	5468	MSKCC	GRCh37	3	12475586	12475586	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201781800		P-0071746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	206	348	0	ENST00000287820.6:c.1460C>T	p.Thr487Met	p.T487M	ENST00000287820	NM_015869.4	487	aCg/aTg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618540	37618540	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	716	573	0	ENST00000447079.4:c.216del	p.Glu72AspfsTer20	p.E72Dfs*20	ENST00000447079	NM_015083.1	72	gaG/ga																																																																															
SYK	6850	MSKCC	GRCh37	9	93641118	93641118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	77	459	0	ENST00000375746.1:c.1464C>A	p.Ser488Arg	p.S488R	ENST00000375746	NM_001174167.1	488	agC/agA																																																																															
CDK12	51755	MSKCC	GRCh37	17	37667815	37667824	+	frameshift_variant	Frame_Shift_Del	DEL	GTACCGACCT	GTACCGACCT	-			P-0071746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	200	388	0	ENST00000447079.4:c.2700_2709del	p.Trp900CysfsTer6	p.W900Cfs*6	ENST00000447079	NM_015083.1	900	tgGTACCGACCT/tg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117647462	117647462	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	111	422	0	ENST00000368508.3:c.5482T>C	p.Phe1828Leu	p.F1828L	ENST00000368508	NM_002944.2	1828	Ttc/Ctc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061210	38061227	+	inframe_deletion	In_Frame_Del	DEL	AAGTAGCAGCCGTTCTCG	AAGTAGCAGCCGTTCTCG	-			P-0071746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			789	427	486	0	ENST00000250448.2:c.762_779del	p.Phe254_Tyr259del	p.F254_Y259del	ENST00000250448	NM_004496.3	254	ttCGAGAACGGCTGCTACTTg/ttg																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650473	48650473	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			62	338	288	0	ENST00000376670.3:c.443T>C	p.Leu148Pro	p.L148P	ENST00000376670	NM_002049.3	148	cTg/cCg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161950	47161951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0071751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	269	432	0	ENST00000409792.3:c.4175dup	p.Asn1392LysfsTer6	p.N1392Kfs*6	ENST00000409792	NM_014159.6	1392	aac/aaAc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117874171	117874171	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	299	338	0	ENST00000297338.2:c.283G>C	p.Asp95His	p.D95H	ENST00000297338	NM_006265.2	95	Gac/Cac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039440	47039440	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	T			P-0071751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	206	503	0	ENST00000329236.7:c.828+4G>T		p.X276_splice	ENST00000329236	NM_001204466.1	276																																																																																
MDM4	4194	MSKCC	GRCh37	1	204513734	204513734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	99	376	0	ENST00000367182.3:c.744G>T	p.Gln248His	p.Q248H	ENST00000367182	NM_001278516.1	248	caG/caT																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50488269	50488269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	98	464	0	ENST00000394963.4:c.1183G>A	p.Glu395Lys	p.E395K	ENST00000394963	NM_003076.4	395	Gaa/Aaa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436435	52436457	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCCTGCGAAGAGGTAGAGACCC	TGCCTGCGAAGAGGTAGAGACCC	-			P-0071751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	251	463	0	ENST00000460680.1:c.2057-20_2059del		p.X686_splice	ENST00000460680	NM_004656.3	686																																																																																
MDC1	9656	MSKCC	GRCh37	6	30673052	30673052	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763250651		P-0071751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			761	544	893	0	ENST00000376406.3:c.3908C>T	p.Pro1303Leu	p.P1303L	ENST00000376406	NM_014641.2	1303	cCc/cTc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0071754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	391	388	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1327790	1327790	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0071754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	51	266	0	ENST00000381566.1:c.91C>T	p.Gln31Ter	p.Q31*	ENST00000381566		31	Cag/Tag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713813	30713813	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			778	268	562	0	ENST00000359013.4:c.1213C>G	p.Leu405Val	p.L405V	ENST00000359013	NM_001024847.2	405	Ctc/Gtc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266032	41266242	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGC	TGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGC	-			P-0071754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			745	54	403	0	ENST00000349496.5:c.32_241+1del		p.LDMAMEPDRKAAVSHWQQQSYLDSGIHSGATTTAPSLSGKGNPEEEDVDTSQVLYEWEQGFSQSFTQEQVA10fs	ENST00000349496	NM_001904.3	10	tTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCt/tt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680523	30680523	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	216	406	0	ENST00000376406.3:c.1196T>C	p.Val399Ala	p.V399A	ENST00000376406	NM_014641.2	399	gTt/gCt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117622214	117622214	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	107	295	0	ENST00000368508.3:c.6656G>C	p.Arg2219Thr	p.R2219T	ENST00000368508	NM_002944.2	2219	aGa/aCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	15	291	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0071785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	80	283	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913108	32913108	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	51	361	0	ENST00000380152.3:c.4616T>C	p.Leu1539Ser	p.L1539S	ENST00000380152		1539	tTg/tCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574033	7574059	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTGCAGCAACAGAGGAGGGGGAGAAG	TCTGCAGCAACAGAGGAGGGGGAGAAG	-			P-0071785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	45	328	0	ENST00000269305.4:c.994-26_994del		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0071792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	13	243	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098680	47098680	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0071792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			828	51	484	1	ENST00000409792.3:c.6594T>A	p.Cys2198Ter	p.C2198*	ENST00000409792	NM_014159.6	2198	tgT/tgA																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983110	201983111	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0071792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			761	46	383	0	ENST00000359651.3:c.960_961del	p.Asn321GlnfsTer149	p.N321Qfs*149	ENST00000359651		320	aAG/a																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274099	10274100	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0071792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	33	377	0	ENST00000330684.3:c.169_170delinsT	p.Pro57SerfsTer11	p.P57Sfs*11	ENST00000330684	NM_001134407.1	57	CCc/Tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577093	7577093	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882008		P-0071794-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			708	92	496	0	ENST00000269305.4:c.845G>C	p.Arg282Pro	p.R282P	ENST00000269305	NM_001126112.2	282	cGg/cCg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230538	46230538	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0071794-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	35	358	0	ENST00000334344.6:c.787G>T	p.Glu263Ter	p.E263*	ENST00000334344	NM_152641.2	263	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112177400	112177400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071794-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	52	422	0	ENST00000257430.4:c.6109G>T	p.Asp2037Tyr	p.D2037Y	ENST00000257430	NM_000038.5	2037	Gac/Tac																																																																															
NF1	4763	MSKCC	GRCh37	17	29670033	29670033	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0071794-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	47	237	0	ENST00000358273.4:c.7069G>T	p.Glu2357Ter	p.E2357*	ENST00000358273	NM_001042492.2	2357	Gag/Tag																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987220	36987220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071794-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	54	399	0	ENST00000354822.5:c.469C>T	p.Arg157Cys	p.R157C	ENST00000354822	NM_001079668.2	157	Cgc/Tgc																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38785141	38785141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071794-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	89	419	0	ENST00000348513.6:c.1132G>T	p.Ala378Ser	p.A378S	ENST00000348513	NM_003079.4	378	Gca/Tca																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487266	56487266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071794-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	86	430	0	ENST00000267101.3:c.1412C>A	p.Thr471Asn	p.T471N	ENST00000267101	NM_001982.3	471	aCc/aAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043468	180043468	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071794-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	52	430	0	ENST00000261937.6:c.3118G>C	p.Ala1040Pro	p.A1040P	ENST00000261937	NM_182925.4	1040	Gct/Cct																																																																															
MGA	23269	MSKCC	GRCh37	15	42053935	42053935	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0071794-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	41	268	0	ENST00000219905.7:c.7399-2A>G		p.X2467_splice	ENST00000219905	NM_001164273.1	2467																																																																																
ANKRD11	29123	MSKCC	GRCh37	16	89346170	89346170	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071794-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	60	478	0	ENST00000301030.4:c.6780del	p.Glu2261LysfsTer76	p.E2261Kfs*76	ENST00000301030	NM_001256183.1	2260	gcT/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			353	37	250	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95596411	95596411	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026697-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			432	26	298	0	ENST00000343455.3:c.557A>T	p.Tyr186Phe	p.Y186F	ENST00000343455	NM_177438.2	186	tAt/tTt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519968		P-0071685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	226	346	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935634	13935634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	209	334	0	ENST00000405192.2:c.1222C>T	p.Arg408Cys	p.R408C	ENST00000405192	NM_001163147.1	408	Cgt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991757	72991758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs760959844		P-0071685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	187	425	0	ENST00000268489.5:c.2287dup	p.Glu763GlyfsTer26	p.E763Gfs*26	ENST00000268489	NM_006885.3	763	gag/gGag																																																																															
ERF	2077	MSKCC	GRCh37	19	42752938	42752941	+	frameshift_variant	Frame_Shift_Del	DEL	GTCA	GTCA	-			P-0071685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	240	471	0	ENST00000222329.4:c.1323_1326del	p.Asp442SerfsTer88	p.D442Sfs*88	ENST00000222329	NM_006494.2	441	acTGAC/ac																																																																															
POLE	5426	MSKCC	GRCh37	12	133226032	133226032	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770036124		P-0071685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	180	356	0	ENST00000320574.5:c.3865C>T	p.Arg1289Cys	p.R1289C	ENST00000320574	NM_006231.2	1289	Cgc/Tgc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131973889	131973889	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs761837416		P-0071685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	187	239	0	ENST00000265335.6:c.3592C>T	p.Arg1198Ter	p.R1198*	ENST00000265335		1198	Cga/Tga																																																																															
CIC	23152	MSKCC	GRCh37	19	42797885	42797885	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773220927		P-0071685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	238	429	0	ENST00000575354.2:c.3937C>T	p.Arg1313Trp	p.R1313W	ENST00000575354	NM_015125.3	1313	Cgg/Tgg																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86545136	86545137	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0071685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	194	398	0	ENST00000262426.4:c.965dup	p.Ala323SerfsTer18	p.A323Sfs*18	ENST00000262426	NM_001451.2	321	gcc/gCcc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523349	9523349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	160	335	0	ENST00000353224.5:c.1888G>A	p.Gly630Arg	p.G630R	ENST00000353224	NM_177990.2	630	Ggg/Agg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438229	56438229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	233	366	0	ENST00000407977.2:c.764C>T	p.Ala255Val	p.A255V	ENST00000407977		255	gCc/gTc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65310490	65310490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	258	385	0	ENST00000342505.4:c.2198C>T	p.Pro733Leu	p.P733L	ENST00000342505	NM_002227.2	733	cCa/cTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29508500	29508500	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0071685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	76	60	0	ENST00000358273.4:c.647T>G	p.Leu216Arg	p.L216R	ENST00000358273	NM_001042492.2	216	cTg/cGg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180586	94180586	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780018393		P-0071685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	204	272	0	ENST00000323929.3:c.1582G>A	p.Ala528Thr	p.A528T	ENST00000323929	NM_005591.3	528	Gca/Aca																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026053	48026056	+	frameshift_variant	Frame_Shift_Del	DEL	AAAA	AAAA	-			P-0071685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	264	407	0	ENST00000234420.5:c.931_934del	p.Lys311GlyfsTer26	p.K311Gfs*26	ENST00000234420	NM_000179.2	311	AAAAgg/gg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485826	8485826	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	62	330	0	ENST00000356435.5:c.2991T>A	p.His997Gln	p.H997Q	ENST00000356435		997	caT/caA																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99459922	99459922	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	341	341	0	ENST00000268035.6:c.2018A>G	p.Tyr673Cys	p.Y673C	ENST00000268035	NM_000875.3	673	tAt/tGt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11924263	11924279	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCGGCCCCGTAGGGT	CCCCGGCCCCGTAGGGT	A			P-0071768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	391	512	0	ENST00000353533.5:c.60_76delinsA	p.Gly22ArgfsTer18	p.G22Rfs*18	ENST00000353533	NM_003010.3	20	acCCCCGGCCCCGTAGGGTcc/acAcc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0071771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	23	314	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	14	424	0	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375357	118375357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	13	452	0	ENST00000534358.1:c.8750C>T	p.Ser2917Phe	p.S2917F	ENST00000534358	NM_005933.3	2917	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	150	188	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057304	180057304	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140347743		P-0071778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	148	273	0	ENST00000261937.6:c.434C>T	p.Thr145Met	p.T145M	ENST00000261937	NM_182925.4	145	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	61	185	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435823	56435823	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	164	304	0	ENST00000407977.2:c.1314del	p.Arg439GlyfsTer63	p.R439Gfs*63	ENST00000407977		438	gcC/gc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591883	48591884	+	inframe_insertion	In_Frame_Ins	INS	-	-	AATAGGGCAGCTTGT			P-0071778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	65	255	0	ENST00000342988.3:c.1046_1047insAATAGGGCAGCTTGT	p.Thr349_Val350insIleGlyGlnLeuVal	p.T349_V350insIGQLV	ENST00000342988	NM_005359.5	349	act/acAATAGGGCAGCTTGTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0071800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	77	295	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0071801-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	423	330	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071801-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			852	161	565	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89813023	89813023	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142833057		P-0071803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	49	477	0	ENST00000389301.3:c.3482C>T	p.Thr1161Met	p.T1161M	ENST00000389301	NM_000135.2	1161	aCg/aTg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060776	38060776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	124	583	0	ENST00000250448.2:c.1213C>T	p.Leu405Phe	p.L405F	ENST00000250448	NM_004496.3	405	Ctc/Ttc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38064105	38064105	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0071803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	100	703	0	ENST00000250448.2:c.72+1G>A		p.X24_splice	ENST00000250448	NM_004496.3	24																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176522590	176522605	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGCCCGGCGCCCCC	CGGGCCCGGCGCCCCC	-			P-0071803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	91	606	0	ENST00000292408.4:c.1688_1703del	p.Arg563GlnfsTer53	p.R563Qfs*53	ENST00000292408	NM_213647.1	563	CGGGCCCGGCGCCCCCca/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578397	7578398	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0071807-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	223	674	0	ENST00000269305.4:c.532dup	p.His178ProfsTer3	p.H178Pfs*3	ENST00000269305	NM_001126112.2	178	cac/cCac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521102	187521102	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1317684793		P-0071807-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	159	563	0	ENST00000441802.2:c.12053C>T	p.Ala4018Val	p.A4018V	ENST00000441802	NM_005245.3	4018	gCc/gTc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627922	37627923	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0071807-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	1219	577	0	ENST00000447079.4:c.1838_1839insTT	p.Ser614TyrfsTer3	p.S614Yfs*3	ENST00000447079	NM_015083.1	613	gta/gTTta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0071810-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	56	331	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
CDH1	999	MSKCC	GRCh37	16	68844213	68844214	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0071810-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	209	361	0	ENST00000261769.5:c.803dup	p.Ser270ValfsTer23	p.S270Vfs*23	ENST00000261769	NM_004360.3	267	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7576876	7576882	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGTGG	CCAGTGG	-			P-0069152-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			88	307	471	0	ENST00000269305.4:c.964_970del	p.Pro322MetfsTer21	p.P322Mfs*21	ENST00000269305	NM_001126112.2	322	CCACTGGat/at																																																																															
CDK12	51755	MSKCC	GRCh37	17	37649077	37649077	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069152-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			12174	850	321	0	ENST00000447079.4:c.2182G>C	p.Asp728His	p.D728H	ENST00000447079	NM_015083.1	728	Gac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	155	652	0	ENST00000269305.4:c.542G>C	p.Arg181Pro	p.R181P	ENST00000269305	NM_001126112.2	181	cGc/cCc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207092	1207092	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	94	517	0	ENST00000326873.7:c.180del	p.Tyr60Ter	p.Y60*	ENST00000326873	NM_000455.4	60	taC/ta																																																																															
ATR	545	MSKCC	GRCh37	3	142277521	142277521	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			37	13	337	0	ENST00000350721.4:c.1830G>C	p.Leu610Phe	p.L610F	ENST00000350721	NM_001184.3	610	ttG/ttC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0071654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			28	15	308	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591044	67591044	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			56	12	393	0	ENST00000274335.5:c.1637A>G	p.Glu546Gly	p.E546G	ENST00000274335		546	gAa/gGa																																																																															
ATR	545	MSKCC	GRCh37	3	142277589	142277590	+	missense_variant	Missense_Mutation	DNP	CC	CC	TG			P-0071654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			23	10	311	0	ENST00000350721.4:c.1761_1762delinsCA	p.Glu588Lys	p.E588K	ENST00000350721	NM_001184.3	587	ctGGaa/ctCAaa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602757	10602757	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			763	50	527	0	ENST00000171111.5:c.821A>G	p.His274Arg	p.H274R	ENST00000171111	NM_203500.1	274	cAc/cGc																																																																															
MGA	23269	MSKCC	GRCh37	15	42053967	42053967	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	28	141	0	ENST00000219905.7:c.7429C>T	p.Gln2477Ter	p.Q2477*	ENST00000219905	NM_001164273.1	2477	Cag/Tag																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182630	99182630	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0071684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			699	53	459	0	ENST00000074304.5:c.2433G>T	p.Glu811Asp	p.E811D	ENST00000074304	NM_001134224.1	811	gaG/gaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0071684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	28	221	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
MDM4	4194	MSKCC	GRCh37	1	204513788	204513788	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0071684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	35	152	0	ENST00000367182.3:c.798A>C	p.Glu266Asp	p.E266D	ENST00000367182	NM_001278516.1	266	gaA/gaC																																																																															
STK11	6794	MSKCC	GRCh37	19	1220700	1220702	+	missense_variant	Missense_Mutation	ONP	TCG	TCG	CCT			P-0071684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	45	462	0	ENST00000326873.7:c.718_720delinsCCT	p.Ser240Pro	p.S240P	ENST00000326873	NM_000455.4	240	TCG/CCT																																																																															
MET	4233	MSKCC	GRCh37	7	116411887	116411888	+	intron_variant	Intron	INS	-	-	GAG			P-0071686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	195	447	0	ENST00000397752.3:c.2888-16_2888-15insGAG		p.*963*	ENST00000397752	NM_000245.2																																																																																	
AXIN2	8313	MSKCC	GRCh37	17	63554699	63554699	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	67	433	0	ENST00000307078.5:c.40A>G	p.Ser14Gly	p.S14G	ENST00000307078	NM_004655.3	14	Agc/Ggc																																																																															
MET	4233	MSKCC	GRCh37	7	116340007	116340017	+	frameshift_variant	Frame_Shift_Del	DEL	CCTACATGGAA	CCTACATGGAA	TCCT			P-0071686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	47	329	0	ENST00000397752.3:c.869_879delinsTCCT	p.Ser290PhefsTer42	p.S290Ffs*42	ENST00000397752	NM_000245.2	290	tCCTACATGGAA/tTCCT																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0071706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	262	373	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727451	66727451	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519729		P-0071706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	160	340	0	ENST00000307102.5:c.167A>C	p.Gln56Pro	p.Q56P	ENST00000307102	NM_002755.3	56	cAg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	202	533	0	ENST00000269305.4:c.461del	p.Gly154AlafsTer16	p.G154Afs*16	ENST00000269305	NM_001126112.2	154	gGc/gc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793363	242793363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	96	511	0	ENST00000334409.5:c.714del	p.Val239CysfsTer39	p.V239Cfs*39	ENST00000334409	NM_005018.2	238	ccC/cc																																																																															
GAB2	9846	MSKCC	GRCh37	11	77938048	77938048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	132	375	0	ENST00000361507.4:c.670G>A	p.Asp224Asn	p.D224N	ENST00000361507	NM_080491.2	224	Gac/Aac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584570	48584570	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	156	392	0	ENST00000342988.3:c.743A>T	p.Gln248Leu	p.Q248L	ENST00000342988	NM_005359.5	248	cAg/cTg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753918	57753918	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0071706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	122	278	0	ENST00000274289.3:c.706A>T	p.Arg236Ter	p.R236*	ENST00000274289	NM_006622.3	236	Aga/Tga																																																																															
PAX5	5079	MSKCC	GRCh37	9	36923405	36923406	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0071706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	134	381	0	ENST00000358127.4:c.856_857delinsAA	p.Pro286Asn	p.P286N	ENST00000358127	NM_001280556.1	286	CCt/AAt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729955	41729955	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	164	496	0	ENST00000242208.4:c.574del	p.Ala192ProfsTer6	p.A192Pfs*6	ENST00000242208	NM_002192.2	192	Gcc/cc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865361	57865361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	201	473	0	ENST00000228682.2:c.2838C>A	p.Asn946Lys	p.N946K	ENST00000228682	NM_005269.2	946	aaC/aaA																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68758638	68758638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	334	413	0	ENST00000487270.1:c.794G>T	p.Gly265Val	p.G265V	ENST00000487270	NM_133509.3	265	gGa/gTa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599873	10599873	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	180	406	0	ENST00000171111.5:c.1703T>A	p.Val568Asp	p.V568D	ENST00000171111	NM_203500.1	568	gTc/gAc																																																																															
ALK	238	MSKCC	GRCh37	2	29451825	29451825	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1220052371		P-0071706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	47	242	0	ENST00000389048.3:c.2740G>A	p.Gly914Arg	p.G914R	ENST00000389048	NM_004304.4	914	Ggg/Agg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374293	138374293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	55	380	0	ENST00000289153.2:c.3151G>A	p.Glu1051Lys	p.E1051K	ENST00000289153	NM_006219.2	1051	Gaa/Aaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931588		P-0071710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	54	471	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248980	55248981	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	TCCAGGAAGCCT			P-0071710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	125	434	0	ENST00000275493.2:c.2284-5_2290dup		p.X762_splice	ENST00000275493	NM_005228.3	762																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48591949	48591957	+	inframe_deletion	In_Frame_Del	DEL	ACAGGACAG	ACAGGACAG	-			P-0071710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	33	438	0	ENST00000342988.3:c.1113_1121del	p.His371_Glu374delinsGln	p.H371_E374delinsQ	ENST00000342988	NM_005359.5	371	cACAGGACAGaa/caa																																																																															
ARAF	369	MSKCC	GRCh37	X	47426043	47426043	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777037087		P-0071711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	37	562	1	ENST00000377045.4:c.563G>A	p.Arg188His	p.R188H	ENST00000377045	NM_001654.4	188	cGc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70343561	70343561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	36	358	0	ENST00000374080.3:c.1735C>T	p.Pro579Ser	p.P579S	ENST00000374080		579	Ccc/Tcc																																																																															
MET	4233	MSKCC	GRCh37	7	116411883	116411891	+	intron_variant	Intron	DEL	TTCTTTCTC	TTCTTTCTC	-			P-0071711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	41	357	0	ENST00000397752.3:c.2888-19_2888-11del		p.*963*	ENST00000397752	NM_000245.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	88	458	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs483352822		P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	51	403	0	ENST00000368323.3:c.270G>A	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atA																																																																															
PMS2	5395	MSKCC	GRCh37	7	6038860	6038860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	32	445	0	ENST00000265849.7:c.584C>T	p.Ser195Leu	p.S195L	ENST00000265849	NM_000535.5	195	tCa/tTa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121438901	121438901	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	39	496	0	ENST00000257555.6:c.1802C>G	p.Ser601Ter	p.S601*	ENST00000257555		601	tCa/tGa																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139565433	139565433	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	18	347	0	ENST00000308874.7:c.603G>C	p.Gln201His	p.Q201H	ENST00000308874		201	caG/caC																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602442	10602442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	90	576	0	ENST00000171111.5:c.1136G>T	p.Gly379Val	p.G379V	ENST00000171111	NM_203500.1	379	gGc/gTc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38632010	38632010	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	16	238	0	ENST00000299084.4:c.496G>T	p.Glu166Ter	p.E166*	ENST00000299084	NM_152594.2	166	Gag/Tag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244082	41244082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1064793302		P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	36	354	0	ENST00000357654.3:c.3466G>A	p.Asp1156Asn	p.D1156N	ENST00000357654	NM_007294.3	1156	Gat/Aat																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778143	27778143	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	58	740	0	ENST00000369163.2:c.292G>C	p.Glu98Gln	p.E98Q	ENST00000369163	NM_003536.2	98	Gag/Cag																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858279	27858279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	44	750	0	ENST00000359303.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000359303	NM_003535.2	98	Gag/Aag																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858393	27858393	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			732	53	815	0	ENST00000359303.2:c.178G>C	p.Glu60Gln	p.E60Q	ENST00000359303	NM_003535.2	60	Gag/Cag																																																																															
MITF	4286	MSKCC	GRCh37	3	69998295	69998295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	44	413	0	ENST00000352241.4:c.856C>T	p.Pro286Ser	p.P286S	ENST00000352241	NM_198159.2	286	Ccc/Tcc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268170	153268170	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	36	453	0	ENST00000281708.4:c.638G>C	p.Arg213Thr	p.R213T	ENST00000281708	NM_033632.3	213	aGa/aCa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	401975	401975	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	41	539	0	ENST00000399788.2:c.4816G>T	p.Glu1606Ter	p.E1606*	ENST00000399788	NM_001042603.1	1606	Gag/Tag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3652158	3652158	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	37	523	0	ENST00000294008.3:c.911C>G	p.Ser304Ter	p.S304*	ENST00000294008	NM_032444.2	304	tCa/tGa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15935729	15935729	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	48	546	0	ENST00000268712.3:c.7204G>C	p.Ala2402Pro	p.A2402P	ENST00000268712	NM_006311.3	2402	Gca/Cca																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6213769	6213769	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	32	554	0	ENST00000252674.7:c.1447G>C	p.Glu483Gln	p.E483Q	ENST00000252674	NM_005934.3	483	Gag/Cag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884437	151884437	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	63	449	0	ENST00000262189.6:c.4918del	p.Glu1640ArgfsTer25	p.E1640Rfs*25	ENST00000262189	NM_170606.2	1640	Gag/ag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112100	115112100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	39	642	0	ENST00000257566.3:c.1640C>G	p.Ser547Cys	p.S547C	ENST00000257566	NM_016569.3	547	tCt/tGt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412317	139412317	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	63	557	0	ENST00000277541.6:c.1328del	p.Gly443AlafsTer188	p.G443Afs*188	ENST00000277541	NM_017617.3	443	gGc/gc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43705495	43705495	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	61	590	0	ENST00000382044.4:c.5127G>C	p.Glu1709Asp	p.E1709D	ENST00000382044	NM_001141980.1	1709	gaG/gaC																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163962	47163962	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	26	330	0	ENST00000409792.3:c.2164C>T	p.Gln722Ter	p.Q722*	ENST00000409792	NM_014159.6	722	Cag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255380	16255380	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	103	485	0	ENST00000375759.3:c.2645G>C	p.Arg882Pro	p.R882P	ENST00000375759	NM_015001.2	882	cGa/cCa																																																																															
SESN3	143686	MSKCC	GRCh37	11	94917665	94917665	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	21	313	0	ENST00000536441.1:c.856A>G	p.Met286Val	p.M286V	ENST00000536441	NM_144665.3	286	Atg/Gtg																																																																															
ATRX	546	MSKCC	GRCh37	X	76972659	76972659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	37	222	0	ENST00000373344.5:c.82G>A	p.Glu28Lys	p.E28K	ENST00000373344	NM_000489.3	28	Gaa/Aaa																																																																															
NPM1	4869	MSKCC	GRCh37	5	170817060	170817060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	25	101	0	ENST00000296930.5:c.64G>A	p.Glu22Lys	p.E22K	ENST00000296930	NM_002520.6	22	Gaa/Aaa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347537	89347537	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	55	512	0	ENST00000301030.4:c.5413G>C	p.Val1805Leu	p.V1805L	ENST00000301030	NM_001256183.1	1805	Gtc/Ctc																																																																															
ARAF	369	MSKCC	GRCh37	X	47429343	47429343	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	42	492	0	ENST00000377045.4:c.1471G>C	p.Asp491His	p.D491H	ENST00000377045	NM_001654.4	491	Gac/Cac																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46546351	46546351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	30	306	0	ENST00000262741.5:c.178C>A	p.Leu60Ile	p.L60I	ENST00000262741	NM_003629.3	60	Ctt/Att																																																																															
ESR1	2099	MSKCC	GRCh37	6	152415519	152415519	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	27	468	0	ENST00000206249.3:c.1370-1G>C		p.X457_splice	ENST00000206249	NM_000125.3	457																																																																																
SMAD3	4088	MSKCC	GRCh37	15	67479840	67479840	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	40	457	0	ENST00000327367.4:c.1147G>C	p.Glu383Gln	p.E383Q	ENST00000327367	NM_005902.3	383	Gag/Cag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288925	212288925	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	24	385	0	ENST00000342788.4:c.2821C>G	p.Gln941Glu	p.Q941E	ENST00000342788	NM_005235.2	941	Cag/Gag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597491	10597491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	34	408	0	ENST00000171111.5:c.1712G>A	p.Gly571Asp	p.G571D	ENST00000171111	NM_203500.1	571	gGc/gAc																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73774795	73774795	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	42	593	0	ENST00000254810.4:c.292G>T	p.Glu98Ter	p.E98*	ENST00000254810	NM_005324.3	98	Gaa/Taa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176694598	176694598	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	52	417	0	ENST00000439151.2:c.5182G>T	p.Ala1728Ser	p.A1728S	ENST00000439151	NM_022455.4	1728	Gct/Tct																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5218802	5218802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	39	481	0	ENST00000357368.4:c.3931G>T	p.Asp1311Tyr	p.D1311Y	ENST00000357368	NM_002850.3	1311	Gac/Tac																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164012	47164012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	20	321	0	ENST00000409792.3:c.2114C>T	p.Ser705Leu	p.S705L	ENST00000409792	NM_014159.6	705	tCg/tTg																																																																															
ABL1	25	MSKCC	GRCh37	9	133760697	133760697	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	30	652	0	ENST00000318560.5:c.3020C>G	p.Ser1007Ter	p.S1007*	ENST00000318560	NM_005157.4	1007	tCa/tGa																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150922989	150922989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	87	486	0	ENST00000271640.5:c.1636C>T	p.Pro546Ser	p.P546S	ENST00000271640	NM_001145415.1	546	Cca/Tca																																																																															
DDR2	4921	MSKCC	GRCh37	1	162725046	162725046	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs202091759		P-0071712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	43	555	0	ENST00000367921.3:c.518C>G	p.Ser173Cys	p.S173C	ENST00000367921	NM_006182.2	173	tCc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	85	612	0	ENST00000269305.4:c.472del	p.Arg158AlafsTer12	p.R158Afs*12	ENST00000269305	NM_001126112.2	158	Cgc/gc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46262320	46262320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	52	453	0	ENST00000371998.3:c.904C>A	p.Gln302Lys	p.Q302K	ENST00000371998		302	Cag/Aag																																																																															
ETV6	2120	MSKCC	GRCh37	12	12037438	12037438	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0071713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	91	634	0	ENST00000396373.4:c.1070del	p.Phe357SerfsTer14	p.F357Sfs*14	ENST00000396373	NM_001987.4	357	Ttc/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574035	7574035	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0071716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	88	186	0	ENST00000269305.4:c.994-2A>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40735537	40735537	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0071716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	106	233	0	ENST00000373198.4:c.3336C>A	p.Cys1112Ter	p.C1112*	ENST00000373198	NM_133170.3	1112	tgC/tgA																																																																															
HGF	3082	MSKCC	GRCh37	7	81339465	81339465	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0071716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	30	128	0	ENST00000222390.5:c.1539C>A	p.Tyr513Ter	p.Y513*	ENST00000222390	NM_000601.4	513	taC/taA																																																																															
MED12	9968	MSKCC	GRCh37	X	70351442	70351442	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	24	90	1	ENST00000374080.3:c.4090C>T	p.Gln1364Ter	p.Q1364*	ENST00000374080		1364	Cag/Tag																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39537665	39537665	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	51	192	0	ENST00000262039.4:c.199G>T	p.Gly67Trp	p.G67W	ENST00000262039	NM_002647.2	67	Ggg/Tgg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162743319	162743319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	85	211	0	ENST00000367921.3:c.1789G>A	p.Val597Ile	p.V597I	ENST00000367921	NM_006182.2	597	Gtc/Atc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25990596	25990597	+	splice_acceptor_variant	Splice_Site	DNP	CT	CT	GC			P-0071716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	47	193	0	ENST00000435504.4:c.632-2_632-1delinsGC		p.X211_splice	ENST00000435504		211																																																																																
CSF3R	1441	MSKCC	GRCh37	1	36938222	36938222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	47	280	0	ENST00000361632.4:c.739G>T	p.Gly247Cys	p.G247C	ENST00000361632		247	Ggc/Tgc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641558	18641558	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0071716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	40	144	0	ENST00000266497.5:c.2557A>T	p.Arg853Ter	p.R853*	ENST00000266497		853	Aga/Tga																																																																															
CDC73	79577	MSKCC	GRCh37	1	193218920	193218920	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	31	174	0	ENST00000367435.3:c.1478A>G	p.Asp493Gly	p.D493G	ENST00000367435	NM_024529.4	493	gAt/gGt																																																																															
POT1	25913	MSKCC	GRCh37	7	124482949	124482949	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0071716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	26	146	0	ENST00000357628.3:c.1075C>T	p.Gln359Ter	p.Q359*	ENST00000357628	NM_015450.2	359	Caa/Taa																																																																															
WT1	7490	MSKCC	GRCh37	11	32456288	32456288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	82	296	0	ENST00000332351.3:c.604C>A	p.Leu202Met	p.L202M	ENST00000332351	NM_024426.4	202	Ctg/Atg																																																																															
JUN	3725	MSKCC	GRCh37	1	59247907	59247907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	95	356	0	ENST00000371222.2:c.836G>T	p.Arg279Leu	p.R279L	ENST00000371222	NM_002228.3	279	cGg/cTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81939109	81939109	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	48	182	0	ENST00000359376.3:c.1464C>G	p.Asp488Glu	p.D488E	ENST00000359376	NM_002661.3	488	gaC/gaG																																																																															
MPL	4352	MSKCC	GRCh37	1	43803594	43803594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	104	373	0	ENST00000372470.3:c.75C>A	p.Ser25Arg	p.S25R	ENST00000372470	NM_005373.2	25	agC/agA																																																																															
JAK1	3716	MSKCC	GRCh37	1	65321375	65321375	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0071716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	94	198	0	ENST00000342505.4:c.1465C>T	p.Gln489Ter	p.Q489*	ENST00000342505	NM_002227.2	489	Cag/Tag																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2076247	2076247	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	40	137	0	ENST00000349721.2:c.1954A>T	p.Ser652Cys	p.S652C	ENST00000349721	NM_003070.3	652	Agt/Tgt																																																																															
RB1	5925	MSKCC	GRCh37	13	49039148	49039222	+	inframe_deletion	In_Frame_Del	DEL	TTTGATCAAAGAAGAGGAGTATGATTCTATTATAGTATTCTATAACTCGGTCTTCATGCAGAGACTGAAAACAAA	TTTGATCAAAGAAGAGGAGTATGATTCTATTATAGTATTCTATAACTCGGTCTTCATGCAGAGACTGAAAACAAA	-			P-0071716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	43	120	0	ENST00000267163.4:c.2227_2301del	p.Leu743_Asn767del	p.L743_N767del	ENST00000267163	NM_000321.2	742	gtTTTGATCAAAGAAGAGGAGTATGATTCTATTATAGTATTCTATAACTCGGTCTTCATGCAGAGACTGAAAACAAAt/gtt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514640	103514640	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	48	286	0	ENST00000355739.4:c.1141G>T	p.Gly381Cys	p.G381C	ENST00000355739	NM_000123.3	381	Ggc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0071610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	47	244	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0071528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	189	191	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578483	7578483	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	455	506	0	ENST00000269305.4:c.447del	p.Thr150HisfsTer20	p.T150Hfs*20	ENST00000269305	NM_001126112.2	149	tcC/tc																																																																															
NBN	4683	MSKCC	GRCh37	8	90970981	90970981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1487	199	281	0	ENST00000265433.3:c.1096G>A	p.Asp366Asn	p.D366N	ENST00000265433	NM_002485.4	366	Gac/Aac																																																																															
EP300	2033	MSKCC	GRCh37	22	41566460	41566460	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	121	314	0	ENST00000263253.7:c.4337A>G	p.Tyr1446Cys	p.Y1446C	ENST00000263253	NM_001429.3	1446	tAt/tGt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295314	1295314	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0071528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	941	485	0				ENST00000310581	NM_198253.2																																																																																	
NOTCH3	4854	MSKCC	GRCh37	19	15284889	15284889	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0071528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	332	362	0	ENST00000263388.2:c.4726G>T	p.Glu1576Ter	p.E1576*	ENST00000263388	NM_000435.2	1576	Gag/Tag																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86546670	86546670	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	302	359	0	ENST00000262426.4:c.1119C>A	p.Asp373Glu	p.D373E	ENST00000262426	NM_001451.2	373	gaC/gaA																																																																															
PAK1	5058	MSKCC	GRCh37	11	77069990	77069990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	375	382	0	ENST00000356341.3:c.550G>A	p.Ala184Thr	p.A184T	ENST00000356341	NM_002576.4	184	Gct/Act																																																																															
TET1	80312	MSKCC	GRCh37	10	70451335	70451335	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	161	405	0	ENST00000373644.4:c.6175C>G	p.His2059Asp	p.H2059D	ENST00000373644	NM_030625.2	2059	Cat/Gat																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163404	32163404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			886	156	433	0	ENST00000375023.3:c.5822G>A	p.Gly1941Glu	p.G1941E	ENST00000375023	NM_004557.3	1941	gGa/gAa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053111	180053111	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0071528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	544	416	0	ENST00000261937.6:c.1258G>T	p.Val420Leu	p.V420L	ENST00000261937	NM_182925.4	420	Gtg/Ttg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120761	94120761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	105	344	0	ENST00000369303.4:c.290G>A	p.Arg97Lys	p.R97K	ENST00000369303	NM_004440.3	97	aGg/aAg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041947	14041947	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	378	424	0	ENST00000311895.7:c.2494A>G	p.Thr832Ala	p.T832A	ENST00000311895	NM_005236.2	832	Aca/Gca																																																																															
TET2	54790	MSKCC	GRCh37	4	106197530	106197530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	178	339	0	ENST00000380013.4:c.5863G>A	p.Glu1955Lys	p.E1955K	ENST00000380013	NM_001127208.2	1955	Gag/Aag																																																																															
MET	4233	MSKCC	GRCh37	7	116411883	116411893	+	intron_variant	Intron	DEL	TTCTTTCTCTC	TTCTTTCTCTC	-			P-0012096-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			202	65	495	0	ENST00000397752.3:c.2888-19_2888-9del		p.*963*	ENST00000397752	NM_000245.2																																																																																	
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0054129-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			657	19	334	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0066661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	169	543	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	60	289	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39021148	39021148	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	27	250	0	ENST00000357387.3:c.188T>G	p.Phe63Cys	p.F63C	ENST00000357387	NM_152756.3	63	tTt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7573991	7573991	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0067713-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			649	82	401	0	ENST00000269305.4:c.1036G>T	p.Glu346Ter	p.E346*	ENST00000269305	NM_001126112.2	346	Gag/Tag																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250784	26250784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067713-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			984	52	589	0	ENST00000446824.2:c.50C>T	p.Pro17Leu	p.P17L	ENST00000446824	NM_021018.2	17	cCg/cTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29004286	29004286	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067713-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			566	48	256	0	ENST00000282397.4:c.1007T>C	p.Val336Ala	p.V336A	ENST00000282397	NM_002019.4	336	gTg/gCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0071044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	216	431	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	89	199	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MET	4233	MSKCC	GRCh37	7	116403195	116403195	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1390039369		P-0071044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	164	243	0	ENST00000397752.3:c.2456C>T	p.Ala819Val	p.A819V	ENST00000397752	NM_000245.2	819	gCc/gTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101463	27101463	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0071045-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	23	160	0	ENST00000324856.7:c.4746del	p.Pro1583LeufsTer29	p.P1583Lfs*29	ENST00000324856	NM_006015.4	1582	aTt/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0071082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	186	556	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0071082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	208	453	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0071082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	103	256	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5286121	5286121	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0071082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	141	440	0	ENST00000357368.4:c.31T>G	p.Ser11Ala	p.S11A	ENST00000357368	NM_002850.3	11	Tct/Gct																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921454	39921454	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	52	468	0	ENST00000378444.4:c.4366C>G	p.Leu1456Val	p.L1456V	ENST00000378444	NM_001123385.1	1456	Ctt/Gtt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89712017	89712017	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0071537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	22	81	0	ENST00000371953.3:c.634+1G>A		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																																
ATRX	546	MSKCC	GRCh37	X	76907845	76907845	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0071537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	37	61	0	ENST00000373344.5:c.4318-2A>G		p.X1440_splice	ENST00000373344	NM_000489.3	1440																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56481925	56481925	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149635848		P-0071537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	103	193	0	ENST00000267101.3:c.853G>A	p.Val285Ile	p.V285I	ENST00000267101	NM_001982.3	285	Gtt/Att																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577437	64577457	+	inframe_deletion	In_Frame_Del	DEL	CCAGAAAATGCTCCACGAAGC	CCAGAAAATGCTCCACGAAGC	-			P-0071537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	205	199	0	ENST00000337652.1:c.125_145del	p.Gly42_Leu48del	p.G42_L48del	ENST00000337652	NM_130803.2	42	gGCTTCGTGGAGCATTTTCTGGct/gct																																																																															
MGA	23269	MSKCC	GRCh37	15	41988526	41988526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	67	136	0	ENST00000219905.7:c.1318C>T	p.His440Tyr	p.H440Y	ENST00000219905	NM_001164273.1	440	Cat/Tat																																																																															
ATRX	546	MSKCC	GRCh37	X	76939546	76939560	+	inframe_deletion	In_Frame_Del	DEL	TCAGCCAACACAGAC	TCAGCCAACACAGAC	-			P-0071537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	15	102	0	ENST00000373344.5:c.1188_1202del	p.Lys396_Asp401delinsAsn	p.K396_D401delinsN	ENST00000373344	NM_000489.3	396	aaGTCTGTGTTGGCTGAt/aat																																																																															
ATM	472	MSKCC	GRCh37	11	108186743	108186743	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3218670		P-0071539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	18	145	0	ENST00000278616.4:c.6101G>A	p.Arg2034Gln	p.R2034Q	ENST00000278616	NM_000051.3	2034	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0071557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			42	98	501	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579533	7579533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0071557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			37	121	641	0	ENST00000269305.4:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000269305	NM_001126112.2	52	Caa/Taa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444483	50444483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	179	529	0	ENST00000331340.3:c.413G>A	p.Ser138Asn	p.S138N	ENST00000331340	NM_006060.4	138	aGc/aAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106942	27106943	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0071557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	118	644	0	ENST00000324856.7:c.6555dup	p.Ala2186CysfsTer39	p.A2186Cfs*39	ENST00000324856	NM_006015.4	2185	att/aTtt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106945	27106945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	120	635	0	ENST00000324856.7:c.6556G>T	p.Ala2186Ser	p.A2186S	ENST00000324856	NM_006015.4	2186	Gca/Tca																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123276911	123276911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	123	558	0	ENST00000358487.5:c.1006G>T	p.Asp336Tyr	p.D336Y	ENST00000358487	NM_000141.4	336	Gac/Tac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857127	9857127	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0071557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	47	509	0	ENST00000330684.3:c.4274C>A	p.Ser1425Ter	p.S1425*	ENST00000330684	NM_001134407.1	1425	tCg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0071560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	22	635	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430396	181430396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	56	603	0	ENST00000325404.1:c.248C>T	p.Ser83Leu	p.S83L	ENST00000325404	NM_003106.3	83	tCg/tTg																																																																															
E2F3	1871	MSKCC	GRCh37	6	20481578	20481578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	41	478	0	ENST00000346618.3:c.647G>T	p.Arg216Ile	p.R216I	ENST00000346618	NM_001949.4	216	aGa/aTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1222006	1222006	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1131690920		P-0071560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			58	16	445	0	ENST00000326873.7:c.920+1G>A		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0071560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	27	275	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89176391	89176391	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0071560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	29	313	0	ENST00000336596.2:c.121G>T	p.Glu41Ter	p.E41*	ENST00000336596	NM_005233.5	41	Gag/Tag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11316144	11316145	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0071560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	28	524	0	ENST00000361445.4:c.609_610delinsTT	p.Gln203_Ala204delinsHisSer	p.Q203_A204delinsHS	ENST00000361445	NM_004958.3	203	caGGcc/caTTcc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131915667	131915667	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	40	324	0	ENST00000265335.6:c.665A>T	p.Glu222Val	p.E222V	ENST00000265335		222	gAg/gTg																																																																															
CD79B	974	MSKCC	GRCh37	17	62006606	62006606	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0071560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	17	554	0	ENST00000392795.3:c.673G>T	p.Glu225Ter	p.E225*	ENST00000392795	NM_001039933.1	225	Gag/Tag																																																																															
MALT1	10892	MSKCC	GRCh37	18	56390414	56390414	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	25	362	0	ENST00000348428.3:c.1153G>T	p.Asp385Tyr	p.D385Y	ENST00000348428	NM_006785.3	385	Gat/Tat																																																																															
MSH2	4436	MSKCC	GRCh37	2	47707943	47707943	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	14	369	0	ENST00000233146.2:c.2567A>G	p.Tyr856Cys	p.Y856C	ENST00000233146	NM_000251.2	856	tAt/tGt																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778156	27778157	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0071560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	68	796	0	ENST00000369163.2:c.305_306insA	p.Leu104AlafsTer3	p.L104Afs*3	ENST00000369163	NM_003536.2	102	gtg/gtAg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106547185	106547185	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	23	457	0	ENST00000369096.4:c.422G>C	p.Arg141Thr	p.R141T	ENST00000369096	NM_001198.3	141	aGa/aCa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675442	30675442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	43	672	0	ENST00000376406.3:c.2914G>T	p.Gly972Trp	p.G972W	ENST00000376406	NM_014641.2	972	Ggg/Tgg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001187	150001187	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	43	426	0	ENST00000253339.5:c.2417G>T	p.Arg806Leu	p.R806L	ENST00000253339		806	cGa/cTa																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154338	2154338	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	10	671	0	ENST00000434045.2:c.590T>C	p.Val197Ala	p.V197A	ENST00000434045	NM_001127598.1	197	gTg/gCg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405104	139405104	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0071560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	14	574	0	ENST00000277541.6:c.2740+1G>T		p.X914_splice	ENST00000277541	NM_017617.3	914																																																																																
MAPK3	5595	MSKCC	GRCh37	16	30128016	30128016	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071560-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			91	10	507	1	ENST00000263025.4:c.1113C>A	p.Phe371Leu	p.F371L	ENST00000263025	NM_002746.2	371	ttC/ttA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0071563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	48	235	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405851	157405851	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0071563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	73	417	0	ENST00000346085.5:c.2093C>G	p.Ser698Ter	p.S698*	ENST00000346085	NM_020732.3	698	tCa/tGa																																																																															
ATM	472	MSKCC	GRCh37	11	108200975	108200975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			62	84	145	0	ENST00000278616.4:c.7342G>T	p.Asp2448Tyr	p.D2448Y	ENST00000278616	NM_000051.3	2448	Gat/Tat																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224220	36224220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	47	362	0	ENST00000222270.7:c.6770C>T	p.Pro2257Leu	p.P2257L	ENST00000222270	NM_014727.1	2257	cCc/cTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213857	66213857	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	59	313	0	ENST00000273854.3:c.2573C>G	p.Ala858Gly	p.A858G	ENST00000273854	NM_004439.5	858	gCc/gGc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346136	89346136	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	13	446	0	ENST00000301030.4:c.6814G>T	p.Asp2272Tyr	p.D2272Y	ENST00000301030	NM_001256183.1	2272	Gac/Tac																																																																															
STK11	6794	MSKCC	GRCh37	19	1220361	1220383	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTGCCCGCAGGTACTTCTGTCA	GCTGCCCGCAGGTACTTCTGTCA	-			P-0071563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	58	408	0	ENST00000326873.7:c.465-7_480del		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
BCL6	604	MSKCC	GRCh37	3	187447543	187447543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	90	549	0	ENST00000232014.4:c.650G>T	p.Arg217Leu	p.R217L	ENST00000232014	NM_001130845.1	217	cGg/cTg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59770802	59770802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	22	231	0	ENST00000259008.2:c.2564G>T	p.Arg855Leu	p.R855L	ENST00000259008	NM_032043.2	855	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0071585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			43	34	336	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115972	8115973	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0071585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	142	389	0	ENST00000346208.3:c.1320dup	p.Ala441ArgfsTer66	p.A441Rfs*66	ENST00000346208		440	acc/aCcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	116	203	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78936278	78936278	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761048420		P-0071603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	97	327	0	ENST00000306801.3:c.3710G>A	p.Arg1237His	p.R1237H	ENST00000306801	NM_020761.2	1237	cGc/cAc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082911	16082911	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1403883522		P-0071603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	66	180	0	ENST00000281043.3:c.725G>A	p.Arg242His	p.R242H	ENST00000281043	NM_005378.4	242	cGc/cAc																																																																															
INHA	3623	MSKCC	GRCh37	2	220439869	220439869	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	132	344	0	ENST00000243786.2:c.722G>T	p.Trp241Leu	p.W241L	ENST00000243786	NM_002191.3	241	tGg/tTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874161	151874161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	92	330	0	ENST00000262189.6:c.8377G>A	p.Glu2793Lys	p.E2793K	ENST00000262189	NM_170606.2	2793	Gaa/Aaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0071606-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	36	487	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440904	56440904	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1458799446		P-0071606-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	67	466	0	ENST00000407977.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000407977		145	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071606-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	42	355	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071606-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	31	247	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230459239	230459239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071606-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	54	461	0	ENST00000525115.1:c.1300C>T	p.Arg434Trp	p.R434W	ENST00000525115		434	Cgg/Tgg																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112760269	112760269	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	19	302	0	ENST00000369452.4:c.938A>G	p.Asn313Ser	p.N313S	ENST00000369452	NM_007373.3	313	aAt/aGt																																																																															
FLCN	201163	MSKCC	GRCh37	17	17125892	17125910	+	frameshift_variant	Frame_Shift_Del	DEL	GTTCCTCTGGTGTAGGAAT	GTTCCTCTGGTGTAGGAAT	-			P-0071615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	31	445	0	ENST00000285071.4:c.684_702del	p.Phe229AlafsTer7	p.F229Afs*7	ENST00000285071	NM_144997.5	228	ccATTCCTACACCAGAGGAAC/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0071231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			45	10	152	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0071231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			39	12	137	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0071231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	171	434	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202151181	202151181	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C	rs1354563506		P-0071231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	20	371	0	ENST00000358485.4:c.1482-1G>C		p.X494_splice	ENST00000358485	NM_001080125.1	494																																																																																
PALB2	79728	MSKCC	GRCh37	16	23647167	23647167	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	53	397	0	ENST00000261584.4:c.700G>C	p.Asp234His	p.D234H	ENST00000261584	NM_024675.3	234	Gat/Cat																																																																															
SESN1	27244	MSKCC	GRCh37	6	109321806	109321806	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	78	331	0	ENST00000436639.2:c.617A>G	p.Asp206Gly	p.D206G	ENST00000436639	NM_014454.2	206	gAc/gGc																																																																															
MET	4233	MSKCC	GRCh37	7	116422102	116422102	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913673		P-0071231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	11	249	0	ENST00000397752.3:c.3583C>G	p.Leu1195Val	p.L1195V	ENST00000397752	NM_000245.2	1195	Ctt/Gtt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591150	67591150	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0071231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	41	330	0	ENST00000274335.5:c.1743G>C	p.Leu581Phe	p.L581F	ENST00000274335		581	ttG/ttC																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038828	47038855	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGAGTCCTGGCCTCCCAAGCCCTGT	CAGGGAGTCCTGGCCTCCCAAGCCCTGT	-			P-0071231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	128	196	0	ENST00000329236.7:c.606_633del	p.Gln202HisfsTer20	p.Q202Hfs*20	ENST00000329236	NM_001204466.1	202	CAGGGAGTCCTGGCCTCCCAAGCCCTGTca/ca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971051	21971051	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	113	544	0	ENST00000304494.5:c.307del	p.Arg103GlyfsTer43	p.R103Gfs*43	ENST00000304494	NM_000077.4	103	Cgg/gg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47087991	47087991	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	75	382	0	ENST00000409792.3:c.7084C>G	p.Gln2362Glu	p.Q2362E	ENST00000409792	NM_014159.6	2362	Cag/Gag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89156978	89156978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	38	347	0	ENST00000336596.2:c.80C>A	p.Ser27Tyr	p.S27Y	ENST00000336596	NM_005233.5	27	tCc/tAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425409	49425409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	180	643	0	ENST00000301067.7:c.13079C>T	p.Pro4360Leu	p.P4360L	ENST00000301067	NM_003482.3	4360	cCt/cTt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39250136	39250136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	39	322	0	ENST00000402219.2:c.1433C>T	p.Pro478Leu	p.P478L	ENST00000402219	NM_005633.3	478	cCa/cTa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372168	45372168	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	45	284	0	ENST00000262160.6:c.1001G>C	p.Arg334Thr	p.R334T	ENST00000262160	NM_005901.5	334	aGa/aCa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121912580		P-0071447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	143	251	0	ENST00000342988.3:c.1157G>T	p.Gly386Val	p.G386V	ENST00000342988	NM_005359.5	386	gGt/gTt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060698	38060698	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	233	483	0	ENST00000250448.2:c.1291T>C	p.Ser431Pro	p.S431P	ENST00000250448	NM_004496.3	431	Tct/Cct																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217716	7217718	+	frameshift_variant	Frame_Shift_Del	DEL	TCA	TCA	GG			P-0071447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	181	392	0	ENST00000380728.2:c.209_211delinsCC	p.Leu70ProfsTer39	p.L70Pfs*39	ENST00000380728		70	cTGAag/cCCag																																																																															
AXL	558	MSKCC	GRCh37	19	41758256	41758256	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0071447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	109	240	0	ENST00000301178.4:c.1712T>C	p.Ile571Thr	p.I571T	ENST00000301178	NM_021913.4	571	aTt/aCt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0071472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	162	186	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0071472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	91	238	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145431	58145431	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11547328		P-0071472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	84	234	0	ENST00000257904.6:c.70C>T	p.Arg24Cys	p.R24C	ENST00000257904	NM_000075.3	24	Cgt/Tgt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120828	94120828	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	17	185	0	ENST00000369303.4:c.223C>A	p.Gln75Lys	p.Q75K	ENST00000369303	NM_004440.3	75	Caa/Aaa																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46543187	46543187	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1296227284		P-0071496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	29	193	0	ENST00000262741.5:c.314G>T	p.Arg105Leu	p.R105L	ENST00000262741	NM_003629.3	105	cGg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306557	41306557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	184	254	0	ENST00000373198.4:c.1102G>T	p.Gly368Trp	p.G368W	ENST00000373198	NM_133170.3	368	Ggg/Tgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602757	10602757	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			47	115	295	0	ENST00000171111.5:c.821A>G	p.His274Arg	p.H274R	ENST00000171111	NM_203500.1	274	cAc/cGc																																																																															
MGA	23269	MSKCC	GRCh37	15	42041881	42041881	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0071496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	118	265	0	ENST00000219905.7:c.6076G>T	p.Glu2026Ter	p.E2026*	ENST00000219905	NM_001164273.1	2026	Gaa/Taa																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1327763	1327763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			54	70	194	0	ENST00000381566.1:c.118G>A	p.Glu40Lys	p.E40K	ENST00000381566		40	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0071496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	131	173	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
HGF	3082	MSKCC	GRCh37	7	81334774	81334774	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	58	254	0	ENST00000222390.5:c.1942G>C	p.Gly648Arg	p.G648R	ENST00000222390	NM_000601.4	648	Ggg/Cgg																																																																															
ATM	472	MSKCC	GRCh37	11	108119777	108119777	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			51	118	170	0	ENST00000278616.4:c.1183del	p.Val395Ter	p.V395*	ENST00000278616	NM_000051.3	395	Gta/ta																																																																															
ATR	545	MSKCC	GRCh37	3	142285054	142285054	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	44	238	0	ENST00000350721.4:c.201G>C	p.Met67Ile	p.M67I	ENST00000350721	NM_001184.3	67	atG/atC																																																																															
ALB	213	MSKCC	GRCh37	4	74277714	74277715	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GC	GC	AA			P-0071496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	24	206	0	ENST00000295897.4:c.715_716delinsAA	p.Ala239Lys	p.A239K	ENST00000295897	NM_000477.5	239	GCa/AAa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416630	121416630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	77	252	0	ENST00000257555.6:c.59G>T	p.Gly20Val	p.G20V	ENST00000257555		20	gGg/gTg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0071497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	71	242	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911445	134911445	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs571583026		P-0071497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	112	237	0	ENST00000398015.3:c.1910G>A	p.Arg637His	p.R637H	ENST00000398015	NM_004441.4	637	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0070120-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			437	5	0	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934574		P-0070120-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			592	23	305	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0070365-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			54	24	269	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786202962		P-0070365-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			60	25	518	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971141	21971153	+	frameshift_variant	Frame_Shift_Del	DEL	CGCAGTTGGGCTC	CGCAGTTGGGCTC	-			P-0070365-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			60	56	447	0	ENST00000304494.5:c.205_217del	p.Glu69ProfsTer73	p.E69Pfs*73	ENST00000304494	NM_000077.4	69	GAGCCCAACTGCGcc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0070610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			752	154	521	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0070610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	156	606	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
RET	5979	MSKCC	GRCh37	10	43609955	43609955	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1035958105		P-0070610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1097	148	696	0	ENST00000355710.3:c.1907C>T	p.Thr636Met	p.T636M	ENST00000355710	NM_020975.4	636	aCg/aTg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855589	45855589	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751956427		P-0070610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			848	71	529	0	ENST00000391945.4:c.2068C>T	p.Arg690Trp	p.R690W	ENST00000391945	NM_000400.3	690	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0070610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	32	264	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440661	56440661	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			944	134	577	0	ENST00000407977.2:c.557T>A	p.Ile186Asn	p.I186N	ENST00000407977		186	aTt/aAt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49924988	49924988	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	46	537	0	ENST00000296474.3:c.3955G>T	p.Val1319Leu	p.V1319L	ENST00000296474	NM_002447.2	1319	Gtg/Ttg																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96931001	96931001	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070610-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			951	89	516	0	ENST00000258439.3:c.119C>G	p.Ser40Cys	p.S40C	ENST00000258439	NM_001193304.2	40	tCt/tGt																																																																															
ATM	472	MSKCC	GRCh37	11	108143299	108143299	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs3092857		P-0071360-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	40	277	0	ENST00000278616.4:c.3118A>G	p.Met1040Val	p.M1040V	ENST00000278616	NM_000051.3	1040	Atg/Gtg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105978	27105979	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0071360-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			796	80	412	0	ENST00000324856.7:c.5591_5592del	p.Glu1864AlafsTer36	p.E1864Afs*36	ENST00000324856	NM_006015.4	1863	acAGag/acag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25978930	25978930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071360-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	46	231	0	ENST00000435504.4:c.993C>A	p.Phe331Leu	p.F331L	ENST00000435504		331	ttC/ttA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071360-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	53	187	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532759	187532759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071360-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			725	104	356	0	ENST00000441802.2:c.9634G>A	p.Ala3212Thr	p.A3212T	ENST00000441802	NM_005245.3	3212	Gcc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106585	27106585	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071360-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			822	112	459	0	ENST00000324856.7:c.6196A>G	p.Asn2066Asp	p.N2066D	ENST00000324856	NM_006015.4	2066	Aac/Gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578549	7578550	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0071360-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	108	370	0	ENST00000269305.4:c.379_380dup	p.Ala129LeufsTer42	p.A129Lfs*42	ENST00000269305	NM_001126112.2	127	tcc/tcTCc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039327	47039327	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	154	189	0	ENST00000329236.7:c.719T>C	p.Leu240Pro	p.L240P	ENST00000329236	NM_001204466.1	240	cTg/cCg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs878853247		P-0071362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	144	391	0	ENST00000326873.7:c.709G>C	p.Asp237His	p.D237H	ENST00000326873	NM_000455.4	237	Gac/Cac																																																																															
HGF	3082	MSKCC	GRCh37	7	81392033	81392033	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	66	249	0	ENST00000222390.5:c.244T>C	p.Phe82Leu	p.F82L	ENST00000222390	NM_000601.4	82	Ttc/Ctc																																																																															
BTK	695	MSKCC	GRCh37	X	100615625	100615625	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	135	197	0	ENST00000308731.7:c.707G>T	p.Arg236Leu	p.R236L	ENST00000308731	NM_000061.2	236	cGg/cTg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55152044	55152044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	126	301	0	ENST00000257290.5:c.2476C>A	p.Leu826Met	p.L826M	ENST00000257290	NM_006206.4	826	Ctg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0071362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	64	223	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992219	72992219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	131	429	0	ENST00000268489.5:c.1826C>A	p.Thr609Lys	p.T609K	ENST00000268489	NM_006885.3	609	aCa/aAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375675	118375675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	126	404	0	ENST00000534358.1:c.9068A>G	p.Gln3023Arg	p.Q3023R	ENST00000534358	NM_005933.3	3023	cAg/cGg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46603739	46603739	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	130	400	0	ENST00000263734.3:c.1096C>G	p.His366Asp	p.H366D	ENST00000263734	NM_001430.4	366	Cac/Gac																																																																															
FANCA	2175	MSKCC	GRCh37	16	89851272	89851272	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	83	289	0	ENST00000389301.3:c.1460G>T	p.Arg487Leu	p.R487L	ENST00000389301	NM_000135.2	487	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0071373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	232	595	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0071373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	147	345	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
ATM	472	MSKCC	GRCh37	11	108196789	108196789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	77	246	0	ENST00000278616.4:c.6812C>G	p.Pro2271Arg	p.P2271R	ENST00000278616	NM_000051.3	2271	cCt/cGt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038828	47038828	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	59	292	0	ENST00000329236.7:c.604C>T	p.Gln202Ter	p.Q202*	ENST00000329236	NM_001204466.1	202	Cag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	41961829	41961829	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	124	348	0	ENST00000219905.7:c.737A>G	p.Gln246Arg	p.Q246R	ENST00000219905	NM_001164273.1	246	cAg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0071424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	433	297	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965742	25965742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	119	410	0	ENST00000435504.4:c.3464C>T	p.Pro1155Leu	p.P1155L	ENST00000435504		1155	cCc/cTc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922040	39922040	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	52	351	0	ENST00000378444.4:c.4132C>A	p.Pro1378Thr	p.P1378T	ENST00000378444	NM_001123385.1	1378	Cca/Aca																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206933	162206933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	42	409	0	ENST00000366898.1:c.742G>T	p.Val248Phe	p.V248F	ENST00000366898	NM_004562.2	248	Gtc/Ttc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40864472	40864472	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	47	360	0	ENST00000428826.2:c.1236A>T	p.Lys412Asn	p.K412N	ENST00000428826		412	aaA/aaT																																																																															
XIAP	331	MSKCC	GRCh37	X	123022541	123022541	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	62	243	0	ENST00000355640.3:c.950G>T	p.Trp317Leu	p.W317L	ENST00000355640		317	tGg/tTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81372724	81372724	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	90	299	0	ENST00000222390.5:c.810G>A	p.Trp270Ter	p.W270*	ENST00000222390	NM_000601.4	270	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578539	7578539	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs587782160		P-0071425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	215	309	0	ENST00000269305.4:c.391A>T	p.Asn131Tyr	p.N131Y	ENST00000269305	NM_001126112.2	131	Aac/Tac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0071425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	241	200	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523265	9523265	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	41	261	0	ENST00000353224.5:c.1972A>T	p.Ser658Cys	p.S658C	ENST00000353224	NM_177990.2	658	Agt/Tgt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38173492	38173492	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0071425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	46	265	0	ENST00000317025.8:c.1924del	p.Met642Ter	p.M642*	ENST00000317025	NM_023034.1	642	Atg/tg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980756	70980756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	47	239	0	ENST00000276594.2:c.712C>T	p.Leu238Phe	p.L238F	ENST00000276594	NM_024504.3	238	Ctt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0071426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	284	459	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0071426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	142	338	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
NUF2	83540	MSKCC	GRCh37	1	163298020	163298020	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0071426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	111	249	0	ENST00000271452.3:c.201G>A	p.Met67Ile	p.M67I	ENST00000271452	NM_145697.2	67	atG/atA																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56480422	56480422	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0071426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	255	305	0	ENST00000267101.3:c.529A>C	p.Lys177Gln	p.K177Q	ENST00000267101	NM_001982.3	177	Aag/Cag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9984889	9984889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	130	296	0	ENST00000330684.3:c.1076C>T	p.Pro359Leu	p.P359L	ENST00000330684	NM_001134407.1	359	cCc/cTc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500664	99500664	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	137	334	0	ENST00000268035.6:c.4097C>G	p.Thr1366Ser	p.T1366S	ENST00000268035	NM_000875.3	1366	aCc/aGc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572272	64572272	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	164	545	1	ENST00000337652.1:c.1382G>T	p.Arg461Leu	p.R461L	ENST00000337652	NM_130803.2	461	cGc/cTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0071426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	289	343	0	ENST00000304494.5:c.151-2A>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0071429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	41	306	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241677	55241677	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs727504256		P-0071429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	28	334	0	ENST00000275493.2:c.2125G>A	p.Glu709Lys	p.E709K	ENST00000275493	NM_005228.3	709	Gaa/Aaa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098328	47098328	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs771957568		P-0071429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	34	307	0	ENST00000409792.3:c.6946A>G	p.Thr2316Ala	p.T2316A	ENST00000409792	NM_014159.6	2316	Act/Gct																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027599	48027599	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	80	320	0	ENST00000234420.5:c.2477A>G	p.His826Arg	p.H826R	ENST00000234420	NM_000179.2	826	cAt/cGt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370723	55370723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	109	332	0	ENST00000297316.4:c.25G>A	p.Ala9Thr	p.A9T	ENST00000297316	NM_022454.3	9	Gcc/Acc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518343	8518343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	23	278	0	ENST00000356435.5:c.1048C>A	p.Pro350Thr	p.P350T	ENST00000356435		350	Cct/Act																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023921	27023921	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1184595505		P-0071437-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	15	172	0	ENST00000324856.7:c.1027G>A	p.Ala343Thr	p.A343T	ENST00000324856	NM_006015.4	343	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0071437-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	139	193	1	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120194	70120194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071437-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	134	234	0	ENST00000245479.2:c.1196C>T	p.Thr399Met	p.T399M	ENST00000245479	NM_000346.3	399	aCg/aTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41818370	41818370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071437-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	156	264	0	ENST00000373198.4:c.4G>A	p.Ala2Thr	p.A2T	ENST00000373198	NM_133170.3	2	Gcg/Acg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539592	187539599	+	frameshift_variant	Frame_Shift_Del	DEL	CACGTCCT	CACGTCCT	-			P-0071437-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	111	183	0	ENST00000441802.2:c.8141_8148del	p.Glu2714AlafsTer14	p.E2714Afs*14	ENST00000441802	NM_005245.3	2714	gAGGACGTG/g																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43745376	43745376	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071437-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	144	152	0	ENST00000523873.1:c.289A>T	p.Thr97Ser	p.T97S	ENST00000523873		97	Act/Tct																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0071438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	21	280	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121913407		P-0071438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	27	312	0	ENST00000349496.5:c.133T>G	p.Ser45Ala	p.S45A	ENST00000349496	NM_001904.3	45	Tct/Gct																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562469	176562469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	56	323	0	ENST00000439151.2:c.365C>T	p.Thr122Ile	p.T122I	ENST00000439151	NM_022455.4	122	aCa/aTa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822736	72822736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	40	299	0	ENST00000268489.5:c.9439C>T	p.Pro3147Ser	p.P3147S	ENST00000268489	NM_006885.3	3147	Cct/Tct																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266130	41266131	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTC			P-0071438-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	27	308	0	ENST00000349496.5:c.130_132dup	p.Pro44dup	p.P44dup	ENST00000349496	NM_001904.3	44	gct/gCTCct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0071441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	109	323	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
MST1	4485	MSKCC	GRCh37	3	49722204	49722204	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0071441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	50	197	0	ENST00000449682.2:c.1736C>G	p.Ser579Ter	p.S579*	ENST00000449682	NM_020998.3	579	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782329		P-0071443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	94	269	0	ENST00000269305.4:c.746G>C	p.Arg249Thr	p.R249T	ENST00000269305	NM_001126112.2	249	aGg/aCg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332618	70332618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	65	257	0	ENST00000373644.4:c.523G>A	p.Val175Ile	p.V175I	ENST00000373644	NM_030625.2	175	Gta/Ata																																																																															
SDHA	6389	MSKCC	GRCh37	5	228334	228334	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs756877901		P-0071443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	63	117	0	ENST00000264932.6:c.656A>G	p.Tyr219Cys	p.Y219C	ENST00000264932	NM_004168.2	219	tAt/tGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8517880	8517880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	76	215	0	ENST00000356435.5:c.1511C>T	p.Ser504Leu	p.S504L	ENST00000356435		504	tCa/tTa																																																																															
SMO	6608	MSKCC	GRCh37	7	128846380	128846380	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	68	312	0	ENST00000249373.3:c.1216G>T	p.Ala406Ser	p.A406S	ENST00000249373	NM_005631.4	406	Gcc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0071443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	75	196	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929005	32929005	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0071443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	96	261	0	ENST00000380152.3:c.7015A>T	p.Lys2339Ter	p.K2339*	ENST00000380152		2339	Aag/Tag																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027577	48027577	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	73	275	0	ENST00000234420.5:c.2455G>C	p.Glu819Gln	p.E819Q	ENST00000234420	NM_000179.2	819	Gag/Cag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426795	212426795	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	66	258	0	ENST00000342788.4:c.2320A>T	p.Ser774Cys	p.S774C	ENST00000342788	NM_005235.2	774	Agt/Tgt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411628	63411628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	69	146	0	ENST00000330258.3:c.1539C>A	p.Asp513Glu	p.D513E	ENST00000330258	NM_152424.3	513	gaC/gaA																																																																															
JAK3	3718	MSKCC	GRCh37	19	17949138	17949138	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201283129		P-0071443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	72	296	0	ENST00000458235.1:c.1503G>T	p.Gln501His	p.Q501H	ENST00000458235	NM_000215.3	501	caG/caT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878763	151878763	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0071443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	96	342	0	ENST00000262189.6:c.6182C>A	p.Ser2061Ter	p.S2061*	ENST00000262189	NM_170606.2	2061	tCa/tAa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47679267	47679267	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	82	246	0	ENST00000347630.2:c.940G>T	p.Ala314Ser	p.A314S	ENST00000347630	NM_001007230.1	314	Gca/Tca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227608	36227608	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	59	287	0	ENST00000222270.7:c.7177G>C	p.Glu2393Gln	p.E2393Q	ENST00000222270	NM_014727.1	2393	Gag/Cag																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128206839	128206839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	88	254	0	ENST00000265960.3:c.1384G>A	p.Asp462Asn	p.D462N	ENST00000265960	NM_001006617.1	462	Gac/Aac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972777	32972777	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	107	320	0	ENST00000380152.3:c.10127C>T	p.Ser3376Leu	p.S3376L	ENST00000380152		3376	tCa/tTa																																																																															
KDR	3791	MSKCC	GRCh37	4	55973953	55973953	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	112	307	0	ENST00000263923.4:c.1363C>A	p.His455Asn	p.H455N	ENST00000263923	NM_002253.2	455	Cac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0071448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	298	473	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0071448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	274	369	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061228	38061228	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	184	420	0	ENST00000250448.2:c.761T>C	p.Phe254Ser	p.F254S	ENST00000250448	NM_004496.3	254	tTc/tCc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259439	89259439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	54	388	0	ENST00000336596.2:c.583G>T	p.Val195Leu	p.V195L	ENST00000336596	NM_005233.5	195	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934573		P-0071450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	87	258	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038726	47038726	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	63	309	0	ENST00000329236.7:c.502C>T	p.Gln168Ter	p.Q168*	ENST00000329236	NM_001204466.1	168	Cag/Tag																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871286	35871286	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145210284		P-0071450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	39	266	0	ENST00000303115.3:c.508C>T	p.Arg170Cys	p.R170C	ENST00000303115	NM_002185.3	170	Cgc/Tgc																																																																															
MET	4233	MSKCC	GRCh37	7	116340201	116340201	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs561295443		P-0071450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	42	311	0	ENST00000397752.3:c.1063G>A	p.Glu355Lys	p.E355K	ENST00000397752	NM_000245.2	355	Gaa/Aaa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843686	156843686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			763	68	455	0	ENST00000524377.1:c.1112C>T	p.Ser371Phe	p.S371F	ENST00000524377	NM_002529.3	371	tCc/tTc																																																																															
MET	4233	MSKCC	GRCh37	7	116412026	116412026	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	405	395	0	ENST00000397752.3:c.3011G>C	p.Arg1004Pro	p.R1004P	ENST00000397752	NM_000245.2	1004	cGa/cCa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99156027	99156027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	100	310	0	ENST00000074304.5:c.707C>T	p.Pro236Leu	p.P236L	ENST00000074304	NM_001134224.1	236	cCa/cTa																																																																															
RB1	5925	MSKCC	GRCh37	13	48954372	48954376	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	ATAGC	ATAGC	-			P-0071450-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	75	251	0	ENST00000267163.4:c.1494_1498del	p.Tyr498Ter	p.Y498*	ENST00000267163	NM_000321.2	498	tATAGC/t																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0071451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	19	338	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
ERG	2078	MSKCC	GRCh37	21	39795352	39795352	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372598575		P-0071451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	39	376	0	ENST00000288319.7:c.368G>A	p.Arg123His	p.R123H	ENST00000288319	NM_182918.3	123	cGc/cAc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213071	39213071	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	26	428	0	ENST00000402219.2:c.3896C>G	p.Ser1299Cys	p.S1299C	ENST00000402219	NM_005633.3	1299	tCt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0071451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	23	315	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
CIC	23152	MSKCC	GRCh37	19	42798990	42798998	+	inframe_deletion	In_Frame_Del	DEL	GCCTTCCAG	GCCTTCCAG	-			P-0071451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	28	393	0	ENST00000575354.2:c.4477_4485del	p.Phe1493_Ala1495del	p.F1493_A1495del	ENST00000575354	NM_015125.3	1492	GCCTTCCAG/-																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495732	72495732	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0071452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	24	278	0	ENST00000477973.2:c.338T>G	p.Trp114Gly	p.W114G	ENST00000477973	NM_012234.5	114	Tgg/Ggg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061125	38061143	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGGCGCCGCTGCCCCCG	CTTGGCGCCGCTGCCCCCG	-			P-0071458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	539	282	0	ENST00000250448.2:c.846_864del	p.Ser282ArgfsTer33	p.S282Rfs*33	ENST00000250448	NM_004496.3	282	agCGGGGGCAGCGGCGCCAAG/ag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120510806	120510806	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071458-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	182	249	0	ENST00000256646.2:c.1158G>C	p.Lys386Asn	p.K386N	ENST00000256646	NM_024408.3	386	aaG/aaC																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423596	88423596	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0071508-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	17	372	0	ENST00000360948.2:c.2239T>G	p.Phe747Val	p.F747V	ENST00000360948	NM_001012338.2	747	Ttc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0071508-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	59	372	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0071508-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	124	347	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
ETV6	2120	MSKCC	GRCh37	12	11992149	11992149	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071508-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	39	395	0	ENST00000396373.4:c.240del	p.Arg80SerfsTer10	p.R80Sfs*10	ENST00000396373	NM_001987.4	80	aGg/ag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197762	66197762	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071508-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	28	392	0	ENST00000273854.3:c.2937G>T	p.Met979Ile	p.M979I	ENST00000273854	NM_004439.5	979	atG/atT																																																																															
ATM	472	MSKCC	GRCh37	11	108119773	108119773	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013752-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			291	58	148	0	ENST00000278616.4:c.1179G>T	p.Trp393Cys	p.W393C	ENST00000278616	NM_000051.3	393	tgG/tgT																																																																															
NF1	4763	MSKCC	GRCh37	17	29562738	29562739	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0013752-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	108	277	0	ENST00000358273.4:c.3822_3823del	p.Phe1275ProfsTer8	p.F1275Pfs*8	ENST00000358273	NM_001042492.2	1273	aCT/a																																																																															
NF1	4763	MSKCC	GRCh37	17	29490395	29490395	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0013752-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			433	58	234	0	ENST00000358273.4:c.479+1G>A		p.X160_splice	ENST00000358273	NM_001042492.2	160																																																																																
ATR	545	MSKCC	GRCh37	3	142278093	142278093	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013752-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			246	25	146	0	ENST00000350721.4:c.1732G>T	p.Val578Leu	p.V578L	ENST00000350721	NM_001184.3	578	Gta/Tta																																																																															
TET2	54790	MSKCC	GRCh37	4	106157564	106157564	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013752-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	61	266	0	ENST00000380013.4:c.2466del	p.Met823Ter	p.M823*	ENST00000380013	NM_001127208.2	822	aCc/ac																																																																															
RAD50	10111	MSKCC	GRCh37	5	131893050	131893050	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs755022536		P-0013752-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	38	297	0	ENST00000265335.6:c.34G>T	p.Val12Leu	p.V12L	ENST00000265335		12	Gtg/Ttg																																																																															
KLF5	688	MSKCC	GRCh37	13	73636645	73636645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038190-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			528	207	542	1	ENST00000377687.4:c.908C>T	p.Ser303Leu	p.S303L	ENST00000377687	NM_001730.3	303	tCa/tTa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945496	17945496	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776106625		P-0038190-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			384	111	335	1	ENST00000458235.1:c.2234C>T	p.Pro745Leu	p.P745L	ENST00000458235	NM_000215.3	745	cCg/cTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508473	106508473	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1370328855		P-0038190-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	95	363	0	ENST00000359195.3:c.467C>T	p.Ala156Val	p.A156V	ENST00000359195	NM_002649.2	156	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578226	7578226	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038190-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			362	183	467	0	ENST00000269305.4:c.623del	p.Asp208AlafsTer39	p.D208Afs*39	ENST00000269305	NM_001126112.2	208	gAc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0044362-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			705	69	570	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044362-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			178	57	239	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575153	64575153	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0044362-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			634	34	486	0	ENST00000337652.1:c.670-1G>C		p.X224_splice	ENST00000337652	NM_130803.2	224																																																																																
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913351		P-0044638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			69	74	209	0	ENST00000288602.6:c.1397G>A	p.Gly466Glu	p.G466E	ENST00000288602	NM_004333.4	466	gGa/gAa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589223	67589225	+	inframe_deletion	In_Frame_Del	DEL	TAA	TAA	-			P-0044638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			152	105	229	0	ENST00000274335.5:c.1214_1216del	p.Ile405del	p.I405del	ENST00000274335		404	tTAAta/tta																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010427	48010427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			565	240	311	0	ENST00000234420.5:c.55G>A	p.Asp19Asn	p.D19N	ENST00000234420	NM_000179.2	19	Gat/Aat																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146596	185146596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			442	221	323	0	ENST00000265026.3:c.227C>T	p.Ser76Phe	p.S76F	ENST00000265026	NM_004721.4	76	tCc/tTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163692	32163692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			554	188	284	0	ENST00000375023.3:c.5534C>T	p.Thr1845Met	p.T1845M	ENST00000375023	NM_004557.3	1845	aCg/aTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905275	50905275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			548	238	494	0	ENST00000440232.2:c.483G>A	p.Met161Ile	p.M161I	ENST00000440232	NM_002691.3	161	atG/atA																																																																															
AXL	558	MSKCC	GRCh37	19	41765808	41765808	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0044638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			535	228	326	0	ENST00000301178.4:c.2684G>C	p.Ter895SerextTer14	p.*895Sext*14	ENST00000301178	NM_021913.4	895	tGa/tCa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266716	198266716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			220	83	226	0	ENST00000335508.6:c.2216G>A	p.Arg739Lys	p.R739K	ENST00000335508	NM_012433.2	739	aGa/aAa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157495237	157495237	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs570798143		P-0044638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			501	240	336	0	ENST00000346085.5:c.3121G>A	p.Glu1041Lys	p.E1041K	ENST00000346085	NM_020732.3	1041	Gag/Aag																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504030	186504030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			180	99	270	0	ENST00000323963.5:c.595G>A	p.Glu199Lys	p.E199K	ENST00000323963		199	Gag/Aag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56474160	56474160	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	215	247	0	ENST00000267101.3:c.76C>T	p.Gln26Ter	p.Q26*	ENST00000267101	NM_001982.3	26	Cag/Tag																																																																															
CIC	23152	MSKCC	GRCh37	19	42797195	42797195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			600	263	415	0	ENST00000575354.2:c.3557G>A	p.Ser1186Asn	p.S1186N	ENST00000575354	NM_015125.3	1186	aGc/aAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183300	56183300	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			358	307	268	0	ENST00000399503.3:c.4210G>C	p.Glu1404Gln	p.E1404Q	ENST00000399503	NM_005921.1	1404	Gag/Cag																																																																															
NF1	4763	MSKCC	GRCh37	17	29654613	29654613	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			217	166	333	0	ENST00000358273.4:c.5365G>T	p.Glu1789Ter	p.E1789*	ENST00000358273	NM_001042492.2	1789	Gaa/Taa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207076	1207077	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046632-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			717	52	432	0	ENST00000326873.7:c.169dup	p.Glu57GlyfsTer106	p.E57Gfs*106	ENST00000326873	NM_000455.4	55	ctg/ctGg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249456	153249456	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046632-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			516	56	317	0	ENST00000281708.4:c.1322G>T	p.Arg441Leu	p.R441L	ENST00000281708	NM_033632.3	441	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577542	7577543	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0046632-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			621	45	356	0	ENST00000269305.4:c.738_739delinsTT	p.Met246_Asn247delinsIleTyr	p.M246_N247delinsIY	ENST00000269305	NM_001126112.2	246	atGAac/atTTac																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24129388	24129388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046632-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			660	59	406	0	ENST00000263121.7:c.32G>A	p.Gly11Glu	p.G11E	ENST00000263121	NM_003073.3	11	gGg/gAg																																																																															
NBN	4683	MSKCC	GRCh37	8	90955595	90955595	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0046632-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			323	30	208	0	ENST00000265433.3:c.2071-1G>T		p.X691_splice	ENST00000265433	NM_002485.4	691																																																																																
MGA	23269	MSKCC	GRCh37	15	42052603	42052603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046632-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			519	79	416	0	ENST00000219905.7:c.7274G>T	p.Arg2425Leu	p.R2425L	ENST00000219905	NM_001164273.1	2425	cGc/cTc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350999	89350999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046632-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			557	95	346	0	ENST00000301030.4:c.1951G>A	p.Glu651Lys	p.E651K	ENST00000301030	NM_001256183.1	651	Gag/Aag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245560	41245560	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046632-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			588	57	373	0	ENST00000357654.3:c.1988G>T	p.Ser663Ile	p.S663I	ENST00000357654	NM_007294.3	663	aGc/aTc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72163795	72163795	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0046632-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			274	27	290	0	ENST00000357731.5:c.563T>A	p.Leu188Ter	p.L188*	ENST00000357731	NM_173808.2	188	tTg/tAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130378	11130378	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0046632-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			480	54	336	0	ENST00000344626.4:c.2616+1G>T		p.X872_splice	ENST00000344626	NM_003072.3	872																																																																																
FGFR1	2260	MSKCC	GRCh37	8	38315034	38315034	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046632-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			598	43	417	0	ENST00000425967.3:c.30G>T	p.Arg10Ser	p.R10S	ENST00000425967	NM_001174067.1	10	agG/agT																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53246347	53246347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046632-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			299	79	202	0	ENST00000375401.3:c.635G>T	p.Arg212Leu	p.R212L	ENST00000375401	NM_004187.3	212	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs786201057		P-0050596-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			200	94	116	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098809	178098809	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519923		P-0050596-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			245	133	93	0	ENST00000397062.3:c.236A>T	p.Glu79Val	p.E79V	ENST00000397062	NM_006164.4	79	gAg/gTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249360	153249361	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0050596-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			237	30	89	0	ENST00000281708.4:c.1417dup	p.Arg473LysfsTer4	p.R473Kfs*4	ENST00000281708	NM_033632.3	473	aga/aAga																																																																															
BRCA1	672	MSKCC	GRCh37	17	41215910	41215910	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050596-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			295	20	60	0	ENST00000357654.3:c.5133A>C	p.Lys1711Asn	p.K1711N	ENST00000357654	NM_007294.3	1711	aaA/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0054742-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			480	171	411	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0054742-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			387	69	364	0				ENST00000310581	NM_198253.2																																																																																	
CSF1R	1436	MSKCC	GRCh37	5	149460351	149460351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1318254419		P-0054742-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			431	108	391	1	ENST00000286301.3:c.286G>A	p.Ala96Thr	p.A96T	ENST00000286301	NM_005211.3	96	Gcc/Acc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599944	10599944	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054742-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			525	131	438	0	ENST00000171111.5:c.1632del	p.Trp544Ter	p.W544*	ENST00000171111	NM_203500.1	544	tgG/tg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054742-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			334	103	310	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290912	15290912	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054742-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			641	44	489	0	ENST00000263388.2:c.3298C>G	p.Arg1100Gly	p.R1100G	ENST00000263388	NM_000435.2	1100	Cgt/Ggt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739747	41739747	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054742-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			571	161	407	0	ENST00000242208.4:c.226C>A	p.Gln76Lys	p.Q76K	ENST00000242208	NM_002192.2	76	Cag/Aag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027057	71027057	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054742-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			618	133	510	0	ENST00000318789.4:c.1270A>T	p.Ile424Phe	p.I424F	ENST00000318789	NM_032682.5	424	Atc/Ttc																																																																															
POT1	25913	MSKCC	GRCh37	7	124465347	124465347	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054742-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			240	37	166	0	ENST00000357628.3:c.1751A>T	p.Asp584Val	p.D584V	ENST00000357628	NM_015450.2	584	gAt/gTt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285814	87285814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054742-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			549	58	418	0	ENST00000277120.3:c.151G>T	p.Gly51Cys	p.G51C	ENST00000277120		51	Ggc/Tgc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857704	9857704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054742-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			736	70	508	0	ENST00000330684.3:c.3697C>A	p.Pro1233Thr	p.P1233T	ENST00000330684	NM_001134407.1	1233	Ccc/Acc																																																																															
ALK	238	MSKCC	GRCh37	2	29606646	29606646	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054742-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			537	41	388	0	ENST00000389048.3:c.1234C>G	p.Arg412Gly	p.R412G	ENST00000389048	NM_004304.4	412	Cgc/Ggc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274028	10274028	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054742-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			593	53	479	0	ENST00000330684.3:c.241A>C	p.Ser81Arg	p.S81R	ENST00000330684	NM_001134407.1	81	Agc/Cgc																																																																															
RB1	5925	MSKCC	GRCh37	13	49047498	49047501	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0054742-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			193	31	128	0	ENST00000267163.4:c.2492_2495del	p.Ile831LysfsTer17	p.I831Kfs*17	ENST00000267163	NM_000321.2	831	aTCTTa/aa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953213	81953213	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054742-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			577	48	391	0	ENST00000359376.3:c.2179C>G	p.Arg727Gly	p.R727G	ENST00000359376	NM_002661.3	727	Cga/Gga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0068524-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			692	277	501	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046717	180046717	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068524-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			747	133	499	0	ENST00000261937.6:c.2595C>A	p.Phe865Leu	p.F865L	ENST00000261937	NM_182925.4	865	ttC/ttA																																																																															
TSC2	7249	MSKCC	GRCh37	16	2120540	2120540	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068524-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			909	82	442	0	ENST00000219476.3:c.1800C>G	p.His600Gln	p.H600Q	ENST00000219476	NM_000548.3	600	caC/caG																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741843	17741843	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068524-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			612	43	376	0	ENST00000250003.3:c.514C>A	p.Pro172Thr	p.P172T	ENST00000250003	NM_002478.4	172	Cct/Act																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435151	56435151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068524-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			759	284	546	0	ENST00000407977.2:c.1986G>T	p.Glu662Asp	p.E662D	ENST00000407977		662	gaG/gaT																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61323027	61323027	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068524-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			646	184	478	0	ENST00000283752.5:c.1037C>A	p.Ala346Asp	p.A346D	ENST00000283752	NM_006919.2	346	gCc/gAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29557277	29557277	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0068524-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	119	319	0	ENST00000358273.4:c.2991-1G>T		p.X997_splice	ENST00000358273	NM_001042492.2	997																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72830293	72830332	+	frameshift_variant	Frame_Shift_Del	DEL	GATGGGCAGCTCCATCGGCATGGAGAGCTGGGTGAGCGGC	GATGGGCAGCTCCATCGGCATGGAGAGCTGGGTGAGCGGC	AAT			P-0068524-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			957	104	486	1	ENST00000268489.5:c.6249_6288delinsATT	p.Pro2084PhefsTer5	p.P2084Ffs*5	ENST00000268489	NM_006885.3	2083	gtGCCGCTCACCCAGCTCTCCATGCCGATGGAGCTGCCCATC/gtATT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0069799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	154	502	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5215345	5215345	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768182732		P-0069799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	59	429	0	ENST00000357368.4:c.4273G>A	p.Val1425Ile	p.V1425I	ENST00000357368	NM_002850.3	1425	Gtc/Atc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830108	72830108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1479325725		P-0069799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	139	400	0	ENST00000268489.5:c.6473G>A	p.Arg2158Gln	p.R2158Q	ENST00000268489	NM_006885.3	2158	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0069799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	251	248	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593498	48593498	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	73	302	0	ENST00000342988.3:c.1249G>T	p.Glu417Ter	p.E417*	ENST00000342988	NM_005359.5	417	Gaa/Taa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918138	50918138	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	49	346	0	ENST00000440232.2:c.2455G>C	p.Asp819His	p.D819H	ENST00000440232	NM_002691.3	819	Gac/Cac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521543	8521543	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868728165		P-0070191-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			262	49	300	0	ENST00000356435.5:c.695G>A	p.Arg232His	p.R232H	ENST00000356435		232	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0070191-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			181	157	522	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440643	56440643	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070191-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	53	459	1	ENST00000407977.2:c.575del	p.Pro192ArgfsTer11	p.P192Rfs*11	ENST00000407977		192	cCg/cg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965643	93965643	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762713500		P-0070191-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			327	92	338	0	ENST00000369303.4:c.2285G>A	p.Arg762His	p.R762H	ENST00000369303	NM_004440.3	762	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070191-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			139	107	242	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	100	296	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs794727798		P-0070252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	146	310	0	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc																																																																															
NF1	4763	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs778405030		P-0070252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	156	400	0	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247367	153247367	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	168	365	0	ENST00000281708.4:c.1435C>T	p.Arg479Ter	p.R479*	ENST00000281708	NM_033632.3	479	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578179	7578180	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0070252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	166	505	0	ENST00000269305.4:c.669dup	p.Glu224Ter	p.E224*	ENST00000269305	NM_001126112.2	223	-/T																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591905	48591905	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	187	404	0	ENST00000342988.3:c.1069del	p.Ser357LeufsTer27	p.S357Lfs*27	ENST00000342988	NM_005359.5	356	ccT/cc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974734	21974751	+	inframe_deletion	In_Frame_Del	DEL	CAGCGCCCGCACCTCCTC	CAGCGCCCGCACCTCCTC	-			P-0070252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	149	400	0	ENST00000304494.5:c.76_93del	p.Glu26_Leu31del	p.E26_L31del	ENST00000304494	NM_000077.4	26	GAGGAGGTGCGGGCGCTG/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520001		P-0070287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	76	438	0	ENST00000269305.4:c.645T>G	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agG																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696435	47696435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	51	351	0	ENST00000347630.2:c.388G>A	p.Asp130Asn	p.D130N	ENST00000347630	NM_001007230.1	130	Gac/Aac																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53230839	53230839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	30	207	0	ENST00000375401.3:c.1954G>T	p.Ala652Ser	p.A652S	ENST00000375401	NM_004187.3	652	Gct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934573		P-0070294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	10	422	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																															
MET	4233	MSKCC	GRCh37	7	116411869	116411873	+	intron_variant	Intron	DEL	CTTTA	CTTTA	-			P-0070294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	40	581	0	ENST00000397752.3:c.2888-34_2888-30del		p.*963*	ENST00000397752	NM_000245.2																																																																																	
IL10	3586	MSKCC	GRCh37	1	206944256	206944256	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374619208		P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			761	88	295	0	ENST00000423557.1:c.374G>A	p.Arg125His	p.R125H	ENST00000423557	NM_000572.2	125	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			569	230	444	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			669	129	441	0	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044967	47044967	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			664	119	453	0	ENST00000329236.7:c.2059C>T	p.Arg687Ter	p.R687*	ENST00000329236	NM_001204466.1	687	Cga/Tga																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552663	18552663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			466	77	354	0	ENST00000266497.5:c.2074C>T	p.Pro692Ser	p.P692S	ENST00000266497		692	Cct/Tct																																																																															
TCF3	6929	MSKCC	GRCh37	19	1646427	1646427	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			504	83	326	0	ENST00000344749.5:c.73-1G>C		p.X25_splice	ENST00000344749	NM_001136139.2	25																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89521614	89521614	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			328	66	314	0	ENST00000336596.2:c.2691G>T	p.Arg897Ser	p.R897S	ENST00000336596	NM_005233.5	897	agG/agT																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88726706	88726706	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			494	57	308	0	ENST00000360948.2:c.338C>A	p.Ser113Ter	p.S113*	ENST00000360948	NM_001012338.2	113	tCa/tAa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438226	110438226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			529	139	381	0	ENST00000375856.3:c.175G>A	p.Glu59Lys	p.E59K	ENST00000375856	NM_003749.2	59	Gag/Aag																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772611	135772611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			587	94	392	0	ENST00000298552.3:c.2935G>A	p.Glu979Lys	p.E979K	ENST00000298552	NM_001162426.1	979	Gaa/Aaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428237	49428237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			816	117	392	0	ENST00000301067.7:c.10463C>T	p.Ser3488Phe	p.S3488F	ENST00000301067	NM_003482.3	3488	tCc/tTc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946307	2946307	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370705908		P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			685	79	337	0	ENST00000396946.4:c.3430C>T	p.Arg1144Cys	p.R1144C	ENST00000396946	NM_032415.4	1144	Cgc/Tgc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347087	89347087	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762574237		P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			735	105	422	0	ENST00000301030.4:c.5863G>A	p.Glu1955Lys	p.E1955K	ENST00000301030	NM_001256183.1	1955	Gag/Aag																																																																															
KLF5	688	MSKCC	GRCh37	13	73649902	73649902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			617	148	305	0	ENST00000377687.4:c.1252G>A	p.Asp418Asn	p.D418N	ENST00000377687	NM_001730.3	418	Gat/Aat																																																																															
MLH1	4292	MSKCC	GRCh37	3	37089115	37089115	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1212620164		P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			471	82	328	0	ENST00000231790.2:c.1837G>C	p.Glu613Gln	p.E613Q	ENST00000231790	NM_000249.3	613	Gag/Cag																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741852	17741852	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	60	297	0	ENST00000250003.3:c.523G>C	p.Ala175Pro	p.A175P	ENST00000250003	NM_002478.4	175	Gca/Cca																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176153800	176153800	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			325	35	209	0	ENST00000367669.3:c.436G>C	p.Ala146Pro	p.A146P	ENST00000367669	NM_022457.5	146	Gca/Cca																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251866	212251866	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			390	48	273	0	ENST00000342788.4:c.3193del	p.Val1065TyrfsTer87	p.V1065Yfs*87	ENST00000342788	NM_005235.2	1065	Gta/ta																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8633415	8633415	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			329	70	291	0	ENST00000356435.5:c.254A>C	p.Gln85Pro	p.Q85P	ENST00000356435		85	cAa/cCa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63829513	63829513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			486	63	278	0	ENST00000279873.7:c.1156G>A	p.Gly386Arg	p.G386R	ENST00000279873	NM_032199.2	386	Ggg/Agg																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27777888	27777888	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1210	127	540	0	ENST00000369163.2:c.38del	p.Gly13AlafsTer50	p.G13Afs*50	ENST00000369163	NM_003536.2	13	Ggc/gc																																																																															
AXL	558	MSKCC	GRCh37	19	41759550	41759550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			773	103	357	0	ENST00000301178.4:c.1973G>A	p.Ser658Asn	p.S658N	ENST00000301178	NM_021913.4	658	aGt/aAt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534379	63534379	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			825	105	485	0	ENST00000307078.5:c.1142T>A	p.Leu381Gln	p.L381Q	ENST00000307078	NM_004655.3	381	cTg/cAg																																																																															
REST	5978	MSKCC	GRCh37	4	57777183	57777183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			715	117	392	0	ENST00000309042.7:c.379G>A	p.Ala127Thr	p.A127T	ENST00000309042	NM_005612.4	127	Gca/Aca																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013743	12013743	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			214	57	184	0	ENST00000353533.5:c.685G>C	p.Asp229His	p.D229H	ENST00000353533	NM_003010.3	229	Gat/Cat																																																																															
MGA	23269	MSKCC	GRCh37	15	42052646	42052646	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			785	98	368	0	ENST00000219905.7:c.7317G>T	p.Met2439Ile	p.M2439I	ENST00000219905	NM_001164273.1	2439	atG/atT																																																																															
NF1	4763	MSKCC	GRCh37	17	29657456	29657456	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs750915711		P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			510	66	352	0	ENST00000358273.4:c.5752A>G	p.Asn1918Asp	p.N1918D	ENST00000358273	NM_001042492.2	1918	Aat/Gat																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63975967	63975967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			658	106	450	0	ENST00000295900.6:c.1477G>A	p.Glu493Lys	p.E493K	ENST00000295900	NM_000333.3	493	Gag/Aag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220030	5220030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			572	74	423	0	ENST00000357368.4:c.3685G>A	p.Gly1229Ser	p.G1229S	ENST00000357368	NM_002850.3	1229	Ggc/Agc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643514	38643514	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			591	65	324	2	ENST00000299084.4:c.984G>T	p.Glu328Asp	p.E328D	ENST00000299084	NM_152594.2	328	gaG/gaT																																																																															
CASP8	841	MSKCC	GRCh37	2	202151181	202151181	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			462	69	264	0	ENST00000358485.4:c.1482-1G>T		p.X494_splice	ENST00000358485	NM_001080125.1	494																																																																																
BIRC3	330	MSKCC	GRCh37	11	102196048	102196048	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			674	84	355	0	ENST00000263464.3:c.808C>G	p.Leu270Val	p.L270V	ENST00000263464	NM_001165.4	270	Cta/Gta																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214693	5214693	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			480	182	404	0	ENST00000357368.4:c.4373A>T	p.Gln1458Leu	p.Q1458L	ENST00000357368	NM_002850.3	1458	cAg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36215888	36215888	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			811	108	330	0	ENST00000222270.7:c.3430-2A>T		p.X1144_splice	ENST00000222270	NM_014727.1	1144																																																																																
PDPK1	5170	MSKCC	GRCh37	16	2636769	2636769	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			821	104	359	0	ENST00000342085.4:c.1218G>T	p.Gln406His	p.Q406H	ENST00000342085	NM_002613.4	406	caG/caT																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30134360	30134360	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			568	60	225	0	ENST00000263025.4:c.170+1del		p.X57_splice	ENST00000263025	NM_002746.2	57																																																																																
APLNR	187	MSKCC	GRCh37	11	57003413	57003413	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	T	rs1048402746		P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			566	95	456	0	ENST00000257254.3:c.1066C>A	p.Pro356Thr	p.P356T	ENST00000257254		356	Ccc/Acc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523288	176523288	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			737	256	516	0	ENST00000292408.4:c.1945G>A	p.Gly649Ser	p.G649S	ENST00000292408	NM_213647.1	649	Ggc/Agc																																																																															
TEK	7010	MSKCC	GRCh37	9	27172634	27172634	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			364	60	326	0	ENST00000380036.4:c.649G>T	p.Gly217Ter	p.G217*	ENST00000380036	NM_000459.3	217	Gga/Tga																																																																															
HGF	3082	MSKCC	GRCh37	7	81335651	81335651	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			332	70	293	0	ENST00000222390.5:c.1709T>A	p.Leu570Gln	p.L570Q	ENST00000222390	NM_000601.4	570	cTg/cAg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115276396	115276396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			436	83	308	0	ENST00000438362.2:c.932G>A	p.Gly311Glu	p.G311E	ENST00000438362	NM_001242891.1	311	gGa/gAa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118970	70118970	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			690	218	492	0	ENST00000245479.2:c.542C>A	p.Ser181Ter	p.S181*	ENST00000245479	NM_000346.3	181	tCg/tAg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119634948	119634948	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			458	63	365	0	ENST00000316626.5:c.551C>A	p.Pro184Gln	p.P184Q	ENST00000316626		184	cCg/cAg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660342	227660342	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1375289189		P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			631	113	443	0	ENST00000305123.5:c.3113C>T	p.Ser1038Leu	p.S1038L	ENST00000305123	NM_005544.2	1038	tCa/tTa																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045856	26045856	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1205	135	646	0	ENST00000540144.1:c.218G>T	p.Arg73Leu	p.R73L	ENST00000540144	NM_003531.2	73	cGa/cTa																																																																															
ALK	238	MSKCC	GRCh37	2	29519815	29519815	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs75158395		P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			457	196	319	0	ENST00000389048.3:c.1756G>C	p.Ala586Pro	p.A586P	ENST00000389048	NM_004304.4	586	Gcc/Ccc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664651	138664651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			398	72	251	0	ENST00000330315.3:c.914C>A	p.Pro305Gln	p.P305Q	ENST00000330315	NM_023067.3	305	cCg/cAg																																																																															
RAD52	5893	MSKCC	GRCh37	12	1022613	1022630	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTTTCCTATGGAAGACA	AGTTTCCTATGGAAGACA	-			P-0070381-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			477	71	212	0	ENST00000358495.3:c.1196-12_1201del		p.X399_splice	ENST00000358495	NM_134424.2	399																																																																																
NF1	4763	MSKCC	GRCh37	17	29554309	29554309	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0070382-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			225	227	425	0	ENST00000358273.4:c.2325G>T	p.Glu775Asp	p.E775D	ENST00000358273	NM_001042492.2	775	gaG/gaT																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482785	67482785	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070382-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			418	129	438	0	ENST00000327367.4:c.1189G>C	p.Glu397Gln	p.E397Q	ENST00000327367	NM_005902.3	397	Gag/Cag																																																																															
DIS3	22894	MSKCC	GRCh37	13	73350224	73350224	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070382-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			246	176	281	0	ENST00000377767.4:c.661A>G	p.Ile221Val	p.I221V	ENST00000377767	NM_014953.3	221	Ata/Gta																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0070536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	185	436	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057520000		P-0070536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	189	561	0	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88428945	88428945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	103	240	0	ENST00000360948.2:c.2155G>A	p.Asp719Asn	p.D719N	ENST00000360948	NM_001012338.2	719	Gat/Aat																																																																															
NF1	4763	MSKCC	GRCh37	17	29654848	29654848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	78	360	0	ENST00000358273.4:c.5600C>T	p.Pro1867Leu	p.P1867L	ENST00000358273	NM_001042492.2	1867	cCg/cTg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163251	32163251	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	164	541	0	ENST00000375023.3:c.5975A>C	p.Glu1992Ala	p.E1992A	ENST00000375023	NM_004557.3	1992	gAa/gCa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41276064	41276064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	128	291	0	ENST00000357654.3:c.50C>A	p.Ala17Asp	p.A17D	ENST00000357654	NM_007294.3	17	gCt/gAt																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119582453	119582453	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0070536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	68	321	0	ENST00000316626.5:c.949-1G>A		p.X317_splice	ENST00000316626		317																																																																																
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0070556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			691	287	837	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
EP300	2033	MSKCC	GRCh37	22	41568577	41568577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			577	149	583	0	ENST00000263253.7:c.4527G>T	p.Trp1509Cys	p.W1509C	ENST00000263253	NM_001429.3	1509	tgG/tgT																																																																															
POLE	5426	MSKCC	GRCh37	12	133218952	133218952	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			885	173	704	0	ENST00000320574.5:c.4984G>C	p.Glu1662Gln	p.E1662Q	ENST00000320574	NM_006231.2	1662	Gag/Cag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057709	27057709	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1007	161	722	0	ENST00000324856.7:c.1417C>T	p.Gln473Ter	p.Q473*	ENST00000324856	NM_006015.4	473	Cag/Tag																																																																															
RXRA	6256	MSKCC	GRCh37	9	137328339	137328339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759209150		P-0070556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1091	102	576	0	ENST00000481739.1:c.1268C>T	p.Pro423Leu	p.P423L	ENST00000481739	NM_002957.4	423	cCg/cTg																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5522589	5522589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			475	179	484	0	ENST00000397747.3:c.43C>T	p.His15Tyr	p.H15Y	ENST00000397747	NM_025239.3	15	Cac/Tac																																																																															
NUP93	9688	MSKCC	GRCh37	16	56855450	56855457	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTGCAG	ACCTGCAG	T			P-0070556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			656	133	534	0	ENST00000308159.5:c.599_606delinsT	p.His200LeufsTer26	p.H200Lfs*26	ENST00000308159	NM_014669.4	200	cACCTGCAG/cT																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			743	58	394	0	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TC			P-0070648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	30	366	0	ENST00000256078.4:c.180_181inv	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggGAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578424	+	inframe_deletion	In_Frame_Del	DEL	GGGGGCAGCGCCTCACAACCTCCGTCA	GGGGGCAGCGCCTCACAACCTCCGTCA	-			P-0070648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	45	552	0	ENST00000269305.4:c.506_532del	p.Met169_His178delinsAsn	p.M169_H178delinsN	ENST00000269305	NM_001126112.2	169	aTGACGGAGGTTGTGAGGCGCTGCCCCCac/aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0070658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	82	313	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
HGF	3082	MSKCC	GRCh37	7	81334758	81334758	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	71	225	0	ENST00000222390.5:c.1958A>G	p.Asn653Ser	p.N653S	ENST00000222390	NM_000601.4	653	aAt/aGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0070687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			67	86	134	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879885	37879885	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	170	538	0	ENST00000269571.5:c.2180G>C	p.Gly727Ala	p.G727A	ENST00000269571		727	gGa/gCa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155725	56155726	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0070687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	114	287	0	ENST00000399503.3:c.819_820del	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	273	AGa/a																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs121913468		P-0070687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	152	355	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72866457	72866457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375075276		P-0070687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	91	183	0	ENST00000325599.8:c.806G>A	p.Arg269His	p.R269H	ENST00000325599	NM_018130.2	269	cGt/cAt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178262	56178263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATAGC			P-0070687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	83	272	0	ENST00000399503.3:c.3238_3242dup	p.Met1081IlefsTer3	p.M1081Ifs*3	ENST00000399503	NM_005921.1	1079	aat/aATAGCat																																																																															
MGA	23269	MSKCC	GRCh37	15	42046764	42046764	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0070687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	111	282	0	ENST00000219905.7:c.7139del	p.Pro2380ArgfsTer24	p.P2380Rfs*24	ENST00000219905	NM_001164273.1	2380	Ccg/cg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106917	27106938	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGGACAGCCTGGCAGCTCGT	GGGGGACAGCCTGGCAGCTCGT	-			P-0070687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	178	537	0	ENST00000324856.7:c.6529_6550del	p.Gly2177ProfsTer16	p.G2177Pfs*16	ENST00000324856	NM_006015.4	2176	caGGGGGACAGCCTGGCAGCTCGT/ca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0070748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	39	159	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519983		P-0070748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	124	368	0	ENST00000269305.4:c.823T>C	p.Cys275Arg	p.C275R	ENST00000269305	NM_001126112.2	275	Tgt/Cgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27059264	27059264	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0070748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	67	279	0	ENST00000324856.7:c.1901C>G	p.Ser634Ter	p.S634*	ENST00000324856	NM_006015.4	634	tCa/tGa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463289	25463289	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs147828672		P-0070748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	166	380	0	ENST00000264709.3:c.2204A>G	p.Tyr735Cys	p.Y735C	ENST00000264709	NM_175629.2	735	tAc/tGc																																																																															
NF2	4771	MSKCC	GRCh37	22	30070871	30070871	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs74315503		P-0070748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	52	272	0	ENST00000338641.4:c.1387G>A	p.Glu463Lys	p.E463K	ENST00000338641	NM_000268.3	463	Gag/Aag																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42870072	42870072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	66	442	0	ENST00000398585.3:c.100G>A	p.Asp34Asn	p.D34N	ENST00000398585	NM_001135099.1	34	Gat/Aat																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100301	157100301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	32	221	0	ENST00000346085.5:c.1238C>T	p.Ser413Leu	p.S413L	ENST00000346085	NM_020732.3	413	tCg/tTg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022371	12022371	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	157	455	0	ENST00000396373.4:c.477G>C	p.Gln159His	p.Q159H	ENST00000396373	NM_001987.4	159	caG/caC																																																																															
NF1	4763	MSKCC	GRCh37	17	29585383	29585383	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131691072		P-0070748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	47	266	0	ENST00000358273.4:c.4195C>T	p.Gln1399Ter	p.Q1399*	ENST00000358273	NM_001042492.2	1399	Cag/Tag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976949	18976949	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	68	354	0	ENST00000262803.5:c.3334G>T	p.Val1112Leu	p.V1112L	ENST00000262803	NM_002911.3	1112	Gtg/Ttg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2088576	2088576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	17	203	0	ENST00000349721.2:c.2846G>A	p.Arg949Lys	p.R949K	ENST00000349721	NM_003070.3	949	aGa/aAa																																																																															
MSH3	4437	MSKCC	GRCh37	5	80171670	80171670	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750229262		P-0070748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	28	253	0	ENST00000265081.6:c.3403C>T	p.Leu1135Phe	p.L1135F	ENST00000265081	NM_002439.4	1135	Ctt/Ttt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539768	187539768	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	32	374	0	ENST00000441802.2:c.7972A>C	p.Lys2658Gln	p.K2658Q	ENST00000441802	NM_005245.3	2658	Aag/Cag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245678	41245678	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	35	348	0	ENST00000357654.3:c.1870G>C	p.Glu624Gln	p.E624Q	ENST00000357654	NM_007294.3	624	Gaa/Caa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717711	89717712	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0070748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	91	207	0	ENST00000371953.3:c.736_737insAA	p.Pro246GlnfsTer11	p.P246Qfs*11	ENST00000371953	NM_000314.4	246	ccg/cAAcg																																																																															
NF1	4763	MSKCC	GRCh37	17	29557899	29557905	+	frameshift_variant	Frame_Shift_Del	DEL	AACATCA	AACATCA	-			P-0070748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	10	101	0	ENST00000358273.4:c.3156_3162del	p.Ser1053LysfsTer7	p.S1053Kfs*7	ENST00000358273	NM_001042492.2	1051	ggAACATCA/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928319	178928319	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1220116506		P-0070748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	41	266	0	ENST00000263967.3:c.1505G>A	p.Arg502Gln	p.R502Q	ENST00000263967	NM_006218.2	502	cGa/cAa																																																																															
MYC	4609	MSKCC	GRCh37	8	128752971	128752971	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	56	366	0	ENST00000377970.2:c.1132G>C	p.Glu378Gln	p.E378Q	ENST00000377970	NM_002467.4	378	Gag/Cag																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739413	46739413	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs752914030		P-0070748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	61	370	0	ENST00000371975.4:c.1606del	p.Arg536GlufsTer21	p.R536Efs*21	ENST00000371975	NM_003579.3	535	gCc/gc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750454	57750454	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	47	332	0	ENST00000274289.3:c.2014C>G	p.Arg672Gly	p.R672G	ENST00000274289	NM_006622.3	672	Cga/Gga																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031527	11031527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070748-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	90	516	0	ENST00000327064.4:c.1442C>A	p.Pro481His	p.P481H	ENST00000327064	NM_199141.1	481	cCc/cAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361223	66361223	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			609	85	381	0	ENST00000273854.3:c.949C>G	p.Gln317Glu	p.Q317E	ENST00000273854	NM_004439.5	317	Cag/Gag																																																																															
NUF2	83540	MSKCC	GRCh37	1	163298659	163298659	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	28	121	0	ENST00000271452.3:c.299G>T	p.Arg100Leu	p.R100L	ENST00000271452	NM_145697.2	100	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0070789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			270	113	188	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672216	30672216	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1012	118	536	0	ENST00000376406.3:c.4744A>T	p.Thr1582Ser	p.T1582S	ENST00000376406	NM_014641.2	1582	Acc/Tcc																																																																															
RET	5979	MSKCC	GRCh37	10	43596012	43596012	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			629	88	445	0	ENST00000355710.3:c.179C>A	p.Pro60His	p.P60H	ENST00000355710	NM_020975.4	60	cCt/cAt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28885797	28885797	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			411	51	157	0	ENST00000282397.4:c.3565T>A	p.Phe1189Ile	p.F1189I	ENST00000282397	NM_002019.4	1189	Ttc/Atc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123224488	123224488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			544	89	317	0	ENST00000218089.9:c.3341T>G	p.Val1114Gly	p.V1114G	ENST00000218089	NM_001042749.1	1114	gTt/gGt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430933	181430933	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			724	163	512	0	ENST00000325404.1:c.785G>C	p.Arg262Thr	p.R262T	ENST00000325404	NM_003106.3	262	aGg/aCg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502169	157502169	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			709	74	420	0	ENST00000346085.5:c.3202G>T	p.Glu1068Ter	p.E1068*	ENST00000346085	NM_020732.3	1068	Gag/Tag																																																																															
POT1	25913	MSKCC	GRCh37	7	124481210	124481210	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			239	56	84	0	ENST00000357628.3:c.1186G>C	p.Asp396His	p.D396H	ENST00000357628	NM_015450.2	396	Gat/Cat																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681474	30681474	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			680	57	330	0	ENST00000376406.3:c.538A>C	p.Met180Leu	p.M180L	ENST00000376406	NM_014641.2	180	Atg/Ctg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467844	66467845	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0070789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			567	55	330	0	ENST00000273854.3:c.424_425delinsTT	p.Gly142Leu	p.G142L	ENST00000273854	NM_004439.5	142	GGa/TTa																																																																															
KDR	3791	MSKCC	GRCh37	4	55973933	55973933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			656	54	421	0	ENST00000263923.4:c.1383G>T	p.Gln461His	p.Q461H	ENST00000263923	NM_002253.2	461	caG/caT																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683685	162683685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			671	87	373	0	ENST00000366898.1:c.284G>T	p.Cys95Phe	p.C95F	ENST00000366898	NM_004562.2	95	tGt/tTt																																																																															
PPARG	5468	MSKCC	GRCh37	3	12422887	12422887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			538	90	267	0	ENST00000287820.6:c.377C>A	p.Pro126His	p.P126H	ENST00000287820	NM_015869.4	126	cCt/cAt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538335	9538335	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs34102290		P-0070789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			574	38	295	0	ENST00000353224.5:c.1663G>C	p.Ala555Pro	p.A555P	ENST00000353224	NM_177990.2	555	Gct/Cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577539	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	A			P-0070789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			570	76	374	0	ENST00000269305.4:c.742_743delinsT	p.Arg248Ter	p.R248*	ENST00000269305	NM_001126112.2	248	CGg/Tg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0070882-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			518	57	210	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0070882-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			392	53	188	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
FH	2271	MSKCC	GRCh37	1	241680576	241680576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070882-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			507	30	168	0	ENST00000366560.3:c.173G>T	p.Gly58Val	p.G58V	ENST00000366560	NM_000143.3	58	gGt/gTt																																																																															
TAP1	6890	MSKCC	GRCh37	6	32820963	32820989	+	inframe_deletion	In_Frame_Del	DEL	CTGCGGGCAGTGCCGCTGCATAACTGA	CTGCGGGCAGTGCCGCTGCATAACTGA	-			P-0070882-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			428	95	318	0	ENST00000354258.4:c.605_631del	p.Val202_Ala210del	p.V202_A210del	ENST00000354258	NM_000593.5	202	gTCAGTTATGCAGCGGCACTGCCCGCAGca/gca																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836250	89836250	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070882-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			762	104	374	0	ENST00000389301.3:c.2499C>A	p.Cys833Ter	p.C833*	ENST00000389301	NM_000135.2	833	tgC/tgA																																																																															
GNA11	2767	MSKCC	GRCh37	19	3121095	3121095	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1323407613		P-0070882-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			583	51	311	0	ENST00000078429.4:c.998A>G	p.Asp333Gly	p.D333G	ENST00000078429	NM_002067.2	333	gAc/gGc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36931993	36931993	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770842748		P-0070988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	88	472	1	ENST00000361632.4:c.2476C>T	p.Arg826Trp	p.R826W	ENST00000361632		826	Cgg/Tgg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342972	118342972	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	142	339	1	ENST00000534358.1:c.1098G>T	p.Arg366Ser	p.R366S	ENST00000534358	NM_005933.3	366	agG/agT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578403	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGGC	GGGGGC	AGGGG			P-0070988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	12	396	1	ENST00000269305.4:c.527_532delinsCCCCT	p.Cys176SerfsTer71	p.C176Sfs*71	ENST00000269305	NM_001126112.2	176	tGCCCCCac/tCCCCTac																																																																															
ATR	545	MSKCC	GRCh37	3	142281922	142281922	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	43	283	0	ENST00000350721.4:c.322C>A	p.Leu108Met	p.L108M	ENST00000350721	NM_001184.3	108	Ctg/Atg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591055	67591055	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	GG			P-0070988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	29	299	0	ENST00000274335.5:c.1648delinsGG	p.Lys550GlyfsTer6	p.K550Gfs*6	ENST00000274335		550	Aag/GGag																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073398	8073398	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201286989		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	196	349	0	ENST00000377482.5:c.1261G>A	p.Ala421Thr	p.A421T	ENST00000377482	NM_018948.3	421	Gcc/Acc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11288735	11288735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	99	316	0	ENST00000361445.4:c.3020C>T	p.Ala1007Val	p.A1007V	ENST00000361445	NM_004958.3	1007	gCc/gTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094351	27094351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	134	328	0	ENST00000324856.7:c.3059G>T	p.Arg1020Met	p.R1020M	ENST00000324856	NM_006015.4	1020	aGg/aTg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115277091	115277091	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754952923		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	118	247	0	ENST00000438362.2:c.692G>A	p.Arg231His	p.R231H	ENST00000438362	NM_001242891.1	231	cGc/cAc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458273	120458273	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs763117840		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	45	449	0	ENST00000256646.2:c.7072A>G	p.Met2358Val	p.M2358V	ENST00000256646	NM_024408.3	2358	Atg/Gtg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120461161	120461161	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	148	267	0	ENST00000256646.2:c.5797C>T	p.Arg1933Ter	p.R1933*	ENST00000256646	NM_024408.3	1933	Cga/Tga																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573764	64573764	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373135175		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	164	356	0	ENST00000337652.1:c.1004G>A	p.Arg335His	p.R335H	ENST00000337652	NM_130803.2	335	cGc/cAc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	498235	498235	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	92	253	1	ENST00000399788.2:c.23del	p.Gly8AlafsTer58	p.G8Afs*58	ENST00000399788	NM_001042603.1	8	gGc/gc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	109	285	2	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440489	49440489	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs910695111		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	162	333	0	ENST00000301067.7:c.4321C>T	p.Arg1441Cys	p.R1441C	ENST00000301067	NM_003482.3	1441	Cgc/Tgc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487277	56487277	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1035001455		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	129	264	0	ENST00000267101.3:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000267101	NM_001982.3	475	Cgg/Tgg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856434	111856434	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776317487		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	103	331	0	ENST00000341259.2:c.489del	p.Thr165ProfsTer32	p.T165Pfs*32	ENST00000341259	NM_005475.2	162	gCc/gc																																																																															
RAB35	11021	MSKCC	GRCh37	12	120536939	120536939	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760171048		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	116	278	0	ENST00000229340.5:c.247G>A	p.Gly83Arg	p.G83R	ENST00000229340	NM_006861.6	83	Ggg/Agg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514784	103514784	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	179	402	0	ENST00000355739.4:c.1285G>T	p.Asp429Tyr	p.D429Y	ENST00000355739	NM_000123.3	429	Gat/Tat																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061616	38061616	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	120	335	0	ENST00000250448.2:c.373A>T	p.Asn125Tyr	p.N125Y	ENST00000250448	NM_004496.3	125	Aat/Tat																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	156	327	2	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	301	330	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16022738	16022738	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	150	233	0	ENST00000268712.3:c.1914del	p.Gly639ValfsTer2	p.G639Vfs*2	ENST00000268712	NM_006311.3	638	aaA/aa																																																																															
NF1	4763	MSKCC	GRCh37	17	29553478	29553478	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747195556		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	256	315	2	ENST00000358273.4:c.2033del	p.Pro678ArgfsTer10	p.P678Rfs*10	ENST00000358273	NM_001042492.2	676	aCc/ac																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428251	33428251	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150134822		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	314	308	0	ENST00000335858.7:c.536G>A	p.Arg179His	p.R179H	ENST00000335858	NM_133629.2	179	cGc/cAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880988	37880988	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772054394		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	319	355	0	ENST00000269571.5:c.2317G>A	p.Val773Met	p.V773M	ENST00000269571		773	Gtg/Atg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs758286312		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	326	295	0	ENST00000407977.2:c.349C>A	p.Arg117Ser	p.R117S	ENST00000407977		117	Cgc/Agc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530163	63530163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145007501		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	319	286	0	ENST00000307078.5:c.2272G>A	p.Ala758Thr	p.A758T	ENST00000307078	NM_004655.3	758	Gcg/Acg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533942	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	235	315	0	ENST00000307078.5:c.1212_1215del	p.Glu405AlafsTer52	p.E405Afs*52	ENST00000307078	NM_004655.3	404	agAGAG/ag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214592	5214592	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369295620		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	139	350	0	ENST00000357368.4:c.4474C>T	p.Arg1492Trp	p.R1492W	ENST00000357368	NM_002850.3	1492	Cgg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238958	5238958	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	138	327	0	ENST00000357368.4:c.1821del	p.Val608TrpfsTer30	p.V608Wfs*30	ENST00000357368	NM_002850.3	607	ccC/cc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10248552	10248552	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1323856557		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	143	317	0	ENST00000340748.4:c.4201C>T	p.Arg1401Trp	p.R1401W	ENST00000340748		1401	Cgg/Tgg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18280085	18280085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201029925		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	123	266	0	ENST00000222254.8:c.2168C>T	p.Pro723Leu	p.P723L	ENST00000222254	NM_005027.3	723	cCg/cTg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190670397	190670397	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs576285843		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	141	246	1	ENST00000441310.2:c.335C>T	p.Thr112Met	p.T112M	ENST00000441310	NM_000534.4	112	aCg/aTg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29383127	29383127	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	117	346	0	ENST00000544604.2:c.364G>T	p.Gly122Ter	p.G122*	ENST00000544604	NM_001206998.1	122	Gga/Tga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47084146	47084146	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	133	349	0	ENST00000409792.3:c.7143del	p.Ser2382LeufsTer29	p.S2382Lfs*29	ENST00000409792	NM_014159.6	2381	ccC/cc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72861879	72861879	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746829352		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	27	310	0	ENST00000325599.8:c.1003C>T	p.Arg335Cys	p.R335C	ENST00000325599	NM_018130.2	335	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913288		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	11	299	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980527	1980527	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760185069		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	133	417	2	ENST00000382895.3:c.3989C>T	p.Ala1330Val	p.A1330V	ENST00000382895	NM_133330.2	1330	gCg/gTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1294088	1294088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	101	377	0	ENST00000310581.5:c.913G>A	p.Ala305Thr	p.A305T	ENST00000310581	NM_198253.2	305	Gcg/Acg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295587	1295587	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	176	434	0				ENST00000310581	NM_198253.2																																																																																	
RASA1	5921	MSKCC	GRCh37	5	86648973	86648973	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	94	182	0	ENST00000274376.6:c.1254-1G>A		p.X418_splice	ENST00000274376	NM_002890.2	418																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176520497	176520497	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145635664		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	163	352	0	ENST00000292408.4:c.1342G>A	p.Gly448Ser	p.G448S	ENST00000292408	NM_213647.1	448	Ggc/Agc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721819	176721819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	53	395	0	ENST00000439151.2:c.7450C>T	p.Pro2484Ser	p.P2484S	ENST00000439151	NM_022455.4	2484	Cca/Tca																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047927	180047927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	173	410	0	ENST00000261937.6:c.2248G>A	p.Val750Met	p.V750M	ENST00000261937	NM_182925.4	750	Gtg/Atg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053023	180053023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	133	431	0	ENST00000261937.6:c.1267del	p.Gln423ArgfsTer70	p.Q423Rfs*70	ENST00000261937	NM_182925.4	423	Cag/ag																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43748509	43748509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371177206		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	124	335	0	ENST00000523873.1:c.463C>T	p.Arg155Cys	p.R155C	ENST00000523873		155	Cgc/Tgc																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519461	137519461	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777316078		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	126	282	0	ENST00000367739.4:c.1177G>A	p.Ala393Thr	p.A393T	ENST00000367739	NM_000416.2	393	Gct/Act																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962788	2962788	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201948130		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	131	230	0	ENST00000396946.4:c.2120G>A	p.Arg707His	p.R707H	ENST00000396946	NM_032415.4	707	cGt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268977	55268977	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1302295057		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	283	365	0	ENST00000275493.2:c.3043G>A	p.Glu1015Lys	p.E1015K	ENST00000275493	NM_005228.3	1015	Gag/Aag																																																																															
LYN	4067	MSKCC	GRCh37	8	56910950	56910950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	156	261	0	ENST00000519728.1:c.1096C>T	p.Arg366Trp	p.R366W	ENST00000519728	NM_002350.3	366	Cgg/Tgg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2104161	2104161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	117	273	0	ENST00000349721.2:c.3284G>A	p.Arg1095His	p.R1095H	ENST00000349721	NM_003070.3	1095	cGc/cAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8733840	8733840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	26	279	0	ENST00000356435.5:c.4G>A	p.Val2Met	p.V2M	ENST00000356435		2	Gtg/Atg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128322020	128322020	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	125	315	0	ENST00000265960.3:c.740del	p.Pro247ArgfsTer27	p.P247Rfs*27	ENST00000265960	NM_001006617.1	247	cCg/cg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396761	139396761	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528703507		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	99	272	0	ENST00000277541.6:c.5347C>T	p.Arg1783Trp	p.R1783W	ENST00000277541	NM_017617.3	1783	Cgg/Tgg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814929	139814929	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754682470		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	147	336	0	ENST00000247668.2:c.922C>T	p.Arg308Trp	p.R308W	ENST00000247668	NM_021138.3	308	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448297	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	320	292	0	ENST00000407977.2:c.350del	p.Arg117ProfsTer41	p.R117Pfs*41	ENST00000407977		117	cGc/cc																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150923485	150923485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	152	303	0	ENST00000271640.5:c.2132G>A	p.Arg711His	p.R711H	ENST00000271640	NM_001145415.1	711	cGt/cAt																																																																															
FH	2271	MSKCC	GRCh37	1	241680591	241680591	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	88	231	0	ENST00000366560.3:c.158A>T	p.Glu53Val	p.E53V	ENST00000366560	NM_000143.3	53	gAa/gTa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243708813	243708813	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	87	182	0	ENST00000263826.5:c.1250del	p.Lys417SerfsTer10	p.K417Sfs*10	ENST00000263826	NM_005465.4	417	aAg/ag																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108281	8108281	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs548720084		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	49	297	0	ENST00000585124.1:c.943C>T	p.Arg315Trp	p.R315W	ENST00000585124	NM_004217.3	315	Cgg/Tgg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013722	12013722	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	120	205	0	ENST00000353533.5:c.664A>G	p.Asn222Asp	p.N222D	ENST00000353533	NM_003010.3	222	Aac/Gac																																																																															
CIC	23152	MSKCC	GRCh37	19	42799308	42799308	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	49	114	0	ENST00000575354.2:c.4796del	p.Pro1599GlnfsTer21	p.P1599Qfs*21	ENST00000575354	NM_015125.3	1598	Ccc/cc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39249714	39249714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	110	201	0	ENST00000402219.2:c.1855G>A	p.Ala619Thr	p.A619T	ENST00000402219	NM_005633.3	619	Gca/Aca																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52623128	52623128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	150	310	0	ENST00000394830.3:c.2923C>T	p.Pro975Ser	p.P975S	ENST00000394830	NM_018313.4	975	Cca/Tca																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637650	52637650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	127	268	0	ENST00000394830.3:c.2666C>A	p.Pro889Gln	p.P889Q	ENST00000394830	NM_018313.4	889	cCg/cAg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505330	186505330	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	74	259	0	ENST00000323963.5:c.956T>C	p.Phe319Ser	p.F319S	ENST00000323963		319	tTc/tCc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965691	93965691	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	25	279	0	ENST00000369303.4:c.2237T>C	p.Met746Thr	p.M746T	ENST00000369303	NM_004440.3	746	aTg/aCg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455104	50455104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	29	255	0	ENST00000331340.3:c.651G>T	p.Glu217Asp	p.E217D	ENST00000331340	NM_006060.4	217	gaG/gaT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859283	151859283	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	126	288	0	ENST00000262189.6:c.11379del	p.Lys3793AsnfsTer18	p.K3793Nfs*18	ENST00000262189	NM_170606.2	3793	aaA/aa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859564	151859564	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141417345		P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	161	420	0	ENST00000262189.6:c.11098G>A	p.Ala3700Thr	p.A3700T	ENST00000262189	NM_170606.2	3700	Gca/Aca																																																																															
GATA1	2623	MSKCC	GRCh37	X	48651657	48651657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	175	377	0	ENST00000376670.3:c.826del	p.Asp276IlefsTer16	p.D276Ifs*16	ENST00000376670	NM_002049.3	275	Ggg/gg																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858103	152858103	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	108	323	1	ENST00000406277.2:c.512T>C	p.Leu171Pro	p.L171P	ENST00000406277	NM_152274.4	171	cTg/cCg																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0071004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	74	266	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574026	7574026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	121	274	0	ENST00000269305.4:c.1001G>T	p.Gly334Val	p.G334V	ENST00000269305	NM_001126112.2	334	gGg/gTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913315		P-0071004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	196	442	0	ENST00000326873.7:c.580G>A	p.Asp194Asn	p.D194N	ENST00000326873	NM_000455.4	194	Gac/Aac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528559	89528559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	92	261	0	ENST00000336596.2:c.2859G>C	p.Lys953Asn	p.K953N	ENST00000336596	NM_005233.5	953	aaG/aaC																																																																															
ATR	545	MSKCC	GRCh37	3	142188940	142188940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	63	227	0	ENST00000350721.4:c.6307G>A	p.Glu2103Lys	p.E2103K	ENST00000350721	NM_001184.3	2103	Gaa/Aaa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602750	10602750	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	339	451	0	ENST00000171111.5:c.828G>T	p.Leu276Phe	p.L276F	ENST00000171111	NM_203500.1	276	ttG/ttT																																																																															
ALK	238	MSKCC	GRCh37	2	29519797	29519797	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	129	340	0	ENST00000389048.3:c.1774C>A	p.Leu592Met	p.L592M	ENST00000389048	NM_004304.4	592	Ctg/Atg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17954617	17954617	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1219986698		P-0071004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	220	412	0	ENST00000458235.1:c.277G>A	p.Ala93Thr	p.A93T	ENST00000458235	NM_000215.3	93	Gcc/Acc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30311654	30311654	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	105	233	0	ENST00000262643.3:c.508C>G	p.Gln170Glu	p.Q170E	ENST00000262643	NM_001238.2	170	Caa/Gaa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63537631	63537631	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	66	261	0	ENST00000307078.5:c.1001A>T	p.Gln334Leu	p.Q334L	ENST00000307078	NM_004655.3	334	cAg/cTg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609589	81609589	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	146	415	0	ENST00000298171.2:c.1187T>C	p.Met396Thr	p.M396T	ENST00000298171	NM_000369.2	396	aTg/aCg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31395709	31395709	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0071004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	97	403	0	ENST00000328111.2:c.2562G>C	p.Ter854TyrextTer20	p.*854Yext*20	ENST00000328111	NM_006892.3	854	taG/taC																																																																															
GAB1	2549	MSKCC	GRCh37	4	144359316	144359316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	63	325	0	ENST00000262994.4:c.758C>T	p.Ser253Leu	p.S253L	ENST00000262994	NM_002039.3	253	tCa/tTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55270267	55270267	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1275982156		P-0071004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	131	405	0	ENST00000275493.2:c.3220A>T	p.Thr1074Ser	p.T1074S	ENST00000275493	NM_005228.3	1074	Aca/Tca																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230492774	230492774	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1234936958		P-0071004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	28	356	1	ENST00000525115.1:c.418G>A	p.Glu140Lys	p.E140K	ENST00000525115		140	Gag/Aag																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61323198	61323198	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	25	120	0	ENST00000283752.5:c.866T>A	p.Val289Glu	p.V289E	ENST00000283752	NM_006919.2	289	gTg/gAg																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61323070	61323070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	151	485	0	ENST00000283752.5:c.994G>A	p.Ala332Thr	p.A332T	ENST00000283752	NM_006919.2	332	Gcc/Acc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107944	30107944	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	129	318	0	ENST00000331968.5:c.863A>T	p.Lys288Met	p.K288M	ENST00000331968	NM_002742.2	288	aAg/aTg																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61325825	61325825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	49	138	0	ENST00000283752.5:c.391G>A	p.Val131Met	p.V131M	ENST00000283752	NM_006919.2	131	Gtg/Atg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11317181	11317181	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071004-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	66	397	0	ENST00000361445.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000361445	NM_004958.3	105	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0071008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	190	407	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
RARA	5914	MSKCC	GRCh37	17	38510626	38510626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	77	477	0	ENST00000254066.5:c.880C>T	p.Arg294Trp	p.R294W	ENST00000254066	NM_000964.3	294	Cgg/Tgg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291942	15291942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	45	483	0	ENST00000263388.2:c.2824G>A	p.Gly942Ser	p.G942S	ENST00000263388	NM_000435.2	942	Ggc/Agc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741559	145741559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376493359		P-0071008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	49	529	0	ENST00000428558.2:c.944C>T	p.Ser315Leu	p.S315L	ENST00000428558	NM_004260.3	315	tCg/tTg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18974402	18974402	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	52	372	0	ENST00000262803.5:c.2756T>C	p.Leu919Pro	p.L919P	ENST00000262803	NM_002911.3	919	cTg/cCg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007395	143007395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071008-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	29	244	0	ENST00000262992.4:c.2389C>A	p.Gln797Lys	p.Q797K	ENST00000262992	NM_001101669.1	797	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0071011-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	65	407	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071011-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	59	275	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72897450	72897450	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071011-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	72	395	0	ENST00000325599.8:c.42C>A	p.Phe14Leu	p.F14L	ENST00000325599	NM_018130.2	14	ttC/ttA																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969412	44969432	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGCGGAAACTTGGAAAACT	CAAGCGGAAACTTGGAAAACT	AACG			P-0071011-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	24	193	1	ENST00000377967.4:c.4094_4114delinsAACG	p.Thr1365LysfsTer18	p.T1365Kfs*18	ENST00000377967	NM_021140.2	1365	aCAAGCGGAAACTTGGAAAACTtt/aAACGtt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126342	5126342	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746602942		P-0071021-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	93	234	1	ENST00000381652.3:c.3187C>T	p.Arg1063Cys	p.R1063C	ENST00000381652	NM_004972.3	1063	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579592	7579592	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0071021-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	120	409	0	ENST00000269305.4:c.97-2A>C		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs587781642		P-0071027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	307	497	0	ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	125	305	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974757	21974757	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs761014328		P-0071027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	394	517	0	ENST00000304494.5:c.70C>G	p.Arg24Gly	p.R24G	ENST00000304494	NM_000077.4	24	Cgg/Ggg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974764	21974769	+	inframe_deletion	In_Frame_Del	DEL	GGCCGC	GGCCGC	-			P-0071027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	350	501	0	ENST00000304494.5:c.58_63del	p.Ala20_Ala21del	p.A20_A21del	ENST00000304494	NM_000077.4	20	GCGGCC/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0071037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	321	349	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108164040	108164040	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0071037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	105	163	0	ENST00000278616.4:c.4612G>A	p.Val1538Ile	p.V1538I	ENST00000278616	NM_000051.3	1538	Gta/Ata																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	117	185	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0071039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	14	285	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528711	8528711	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	195	494	0	ENST00000356435.5:c.421C>A	p.Arg141Ser	p.R141S	ENST00000356435		141	Cgc/Agc																																																																															
CDH1	999	MSKCC	GRCh37	16	68844247	68844247	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0071050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	82	234	0	ENST00000261769.5:c.832+3A>G		p.X278_splice	ENST00000261769	NM_004360.3	278																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0071050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	85	199	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0071052-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	20	387	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012385	152012386	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0071052-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	31	333	0	ENST00000262189.6:c.427dup	p.Ser143LysfsTer27	p.S143Kfs*27	ENST00000262189	NM_170606.2	143	agt/aAgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071052-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	22	231	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881002	37881003	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTCCCCA			P-0071053-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	14	418	0	ENST00000269571.5:c.2332_2340dup	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	-/GGCTCCCCA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0071054-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	231	386	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0071054-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	195	406	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0071054-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	59	446	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28931588		P-0071054-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	27	469	0	ENST00000349496.5:c.94G>C	p.Asp32His	p.D32H	ENST00000349496	NM_001904.3	32	Gac/Cac																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274911	41274911	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0071054-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	15	502	0	ENST00000349496.5:c.1161T>G	p.Asn387Lys	p.N387K	ENST00000349496	NM_001904.3	387	aaT/aaG																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913563	39913563	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754643148		P-0071054-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	173	353	0	ENST00000378444.4:c.4765C>T	p.Arg1589Cys	p.R1589C	ENST00000378444	NM_001123385.1	1589	Cgc/Tgc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781830	3781830	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071054-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	265	538	0	ENST00000262367.5:c.4837G>T	p.Val1613Leu	p.V1613L	ENST00000262367	NM_004380.2	1613	Gtg/Ttg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56832403	56832403	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071054-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	87	332	0	ENST00000308159.5:c.313G>C	p.Glu105Gln	p.E105Q	ENST00000308159	NM_014669.4	105	Gag/Cag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419848	41419848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071054-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	98	464	0	ENST00000373198.4:c.473C>T	p.Pro158Leu	p.P158L	ENST00000373198	NM_133170.3	158	cCa/cTa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867528	35867528	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs777419876		P-0071054-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	81	319	0	ENST00000303115.3:c.342G>C	p.Lys114Asn	p.K114N	ENST00000303115	NM_002185.3	114	aaG/aaC																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326758	62326758	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs753123337		P-0071054-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			753	126	588	0	ENST00000482936.1:c.3577G>A	p.Val1193Met	p.V1193M	ENST00000482936		1193	Gtg/Atg																																																																															
TET2	54790	MSKCC	GRCh37	4	106157161	106157161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071054-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	146	513	0	ENST00000380013.4:c.2062G>A	p.Asp688Asn	p.D688N	ENST00000380013	NM_001127208.2	688	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071063-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			459	30	408	0	ENST00000269305.4:c.737T>A	p.Met246Lys	p.M246K	ENST00000269305	NM_001126112.2	246	aTg/aAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071063-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			298	14	276	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88651926	88651926	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071066-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	27	258	0	ENST00000372037.3:c.273G>T	p.Gln91His	p.Q91H	ENST00000372037	NM_004329.2	91	caG/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0071066-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	132	456	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11308084	11308084	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0071066-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	72	490	0	ENST00000361445.4:c.908T>G	p.Leu303Arg	p.L303R	ENST00000361445	NM_004958.3	303	cTc/cGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111446	8111446	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071066-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	148	468	0	ENST00000346208.3:c.932G>C	p.Arg311Thr	p.R311T	ENST00000346208		311	aGg/aCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398283	+	missense_variant	Missense_Mutation	DNP	CA	CA	GG			P-0071066-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	104	268	0	ENST00000256078.4:c.36_37delinsCC	p.Gly13Arg	p.G13R	ENST00000256078	NM_033360.2	12	ggTGgc/ggCCgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0071067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	17	106	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750600586		P-0071067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	132	402	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																															
WT1	7490	MSKCC	GRCh37	11	32417913	32417913	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147241955		P-0071067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	124	350	0	ENST00000332351.3:c.1139G>A	p.Arg380Gln	p.R380Q	ENST00000332351	NM_024426.4	380	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0071067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	32	219	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551973	150551973	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			801	112	372	0	ENST00000369026.2:c.34C>G	p.Leu12Val	p.L12V	ENST00000369026	NM_021960.4	12	Ctc/Gtc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39074439	39074439	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	86	177	0	ENST00000357387.3:c.41G>C	p.Arg14Pro	p.R14P	ENST00000357387	NM_152756.3	14	cGa/cCa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344873	118344873	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	125	344	0	ENST00000534358.1:c.2999A>T	p.Lys1000Ile	p.K1000I	ENST00000534358	NM_005933.3	1000	aAa/aTa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858525	9858525	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	84	351	0	ENST00000330684.3:c.2876A>G	p.Asn959Ser	p.N959S	ENST00000330684	NM_001134407.1	959	aAc/aGc																																																																															
CDH1	999	MSKCC	GRCh37	16	68842397	68842400	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0071073-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	152	205	0	ENST00000261769.5:c.461_464del	p.Arg154ThrfsTer60	p.R154Tfs*60	ENST00000261769	NM_004360.3	153	aAGAGa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0071074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	391	628	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437714	52437714	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0071074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	371	487	0	ENST00000460680.1:c.1447C>T	p.Gln483Ter	p.Q483*	ENST00000460680	NM_004656.3	483	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0071074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	243	324	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
AGO2	27161	MSKCC	GRCh37	8	141559336	141559336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			866	317	461	0	ENST00000220592.5:c.1465C>T	p.Pro489Ser	p.P489S	ENST00000220592	NM_012154.3	489	Ccg/Tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0071075-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	240	419	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0071075-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	200	294	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817720	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0071075-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	169	367	1	ENST00000262367.5:c.3250dup	p.Ile1084AsnfsTer3	p.I1084Nfs*3	ENST00000262367	NM_004380.2	1084	atc/aAtc																																																																															
MED12	9968	MSKCC	GRCh37	X	70361097	70361098	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCAG	rs777164189		P-0071075-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			793	285	541	0	ENST00000374080.3:c.6303_6308dup	p.Gln2114_Gln2115dup	p.Q2114_Q2115dup	ENST00000374080		2114	-/CAGCAG																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845262	151845262	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747850540		P-0071075-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	236	456	0	ENST00000262189.6:c.13750C>T	p.Arg4584Trp	p.R4584W	ENST00000262189	NM_170606.2	4584	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0071075-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	197	214	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78923308	78923308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071075-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	111	388	0	ENST00000306801.3:c.3331G>A	p.Ala1111Thr	p.A1111T	ENST00000306801	NM_020761.2	1111	Gcg/Acg																																																																															
APC	324	MSKCC	GRCh37	5	112175867	112175867	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071075-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	132	403	0	ENST00000257430.4:c.4577del	p.Pro1526LeufsTer39	p.P1526Lfs*39	ENST00000257430	NM_000038.5	1526	Cct/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431879	49431879	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1233005055		P-0071075-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	126	523	0	ENST00000301067.7:c.9260G>A	p.Arg3087Gln	p.R3087Q	ENST00000301067	NM_003482.3	3087	cGg/cAg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181792	56181792	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071075-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	219	289	0	ENST00000399503.3:c.4016G>T	p.Gly1339Val	p.G1339V	ENST00000399503	NM_005921.1	1339	gGa/gTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220415	1220415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913323		P-0071083-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	85	470	0	ENST00000326873.7:c.508C>T	p.Gln170Ter	p.Q170*	ENST00000326873	NM_000455.4	170	Cag/Tag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932981	39932981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071083-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	47	481	0	ENST00000378444.4:c.1618C>T	p.Arg540Trp	p.R540W	ENST00000378444	NM_001123385.1	540	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071083-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	41	257	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KLF5	688	MSKCC	GRCh37	13	73637991	73637991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071083-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	41	350	0	ENST00000377687.4:c.1165C>T	p.His389Tyr	p.H389Y	ENST00000377687	NM_001730.3	389	Cat/Tat																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226384	2226384	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0071083-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	43	439	0	ENST00000326181.6:c.1997A>G	p.Lys666Arg	p.K666R	ENST00000326181	NM_032271.2	666	aAg/aGg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602578	10602578	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071083-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	76	455	0	ENST00000171111.5:c.1000T>C	p.Tyr334His	p.Y334H	ENST00000171111	NM_203500.1	334	Tac/Cac																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429351	78429351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071083-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	48	424	0	ENST00000370768.2:c.1091G>T	p.Gly364Val	p.G364V	ENST00000370768	NM_003902.3	364	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0071086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	413	481	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18650584	18650584	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs387907453		P-0071086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	104	288	0	ENST00000266497.5:c.2795T>C	p.Val932Ala	p.V932A	ENST00000266497		932	gTt/gCt																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80343451	80343451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	133	246	0	ENST00000286548.4:c.868G>T	p.Asp290Tyr	p.D290Y	ENST00000286548	NM_002072.3	290	Gac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112173779	112173780	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0071086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	192	311	1	ENST00000257430.4:c.2489dup	p.Leu831ValfsTer13	p.L831Vfs*13	ENST00000257430	NM_000038.5	830	gtg/gTtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0071090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	66	326	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0071090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	27	278	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	26	252	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APLNR	187	MSKCC	GRCh37	11	57004007	57004007	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs761618705		P-0071090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	39	421	0	ENST00000257254.3:c.472G>A	p.Ala158Thr	p.A158T	ENST00000257254		158	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0071091-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	59	268	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0071095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	131	485	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0071095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	87	379	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545584	106545584	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142182764		P-0071095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	36	317	0	ENST00000359195.3:c.3061C>T	p.Arg1021Cys	p.R1021C	ENST00000359195	NM_002649.2	1021	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	80	272	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435408	56435408	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071095-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	112	526	0	ENST00000407977.2:c.1729del	p.Gln577SerfsTer123	p.Q577Sfs*123	ENST00000407977		577	Cag/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0071097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			50	56	416	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0071097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			55	27	318	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434141	49434141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770491652		P-0071097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	17	442	0	ENST00000301067.7:c.7412G>A	p.Arg2471Gln	p.R2471Q	ENST00000301067	NM_003482.3	2471	cGa/cAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830631	72830631	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753599043		P-0071100-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	12	495	0	ENST00000268489.5:c.5950G>A	p.Glu1984Lys	p.E1984K	ENST00000268489	NM_006885.3	1984	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0071100-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	8	309	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467490	66467490	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071100-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	15	527	0	ENST00000273854.3:c.779G>C	p.Gly260Ala	p.G260A	ENST00000273854	NM_004439.5	260	gGc/gCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0071101-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	119	381	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0071114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	55	111	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0071114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			796	158	133	0	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
TGFBR2	7048	MSKCC	GRCh37	3	30713736	30713736	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0071114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			919	190	137	0	ENST00000359013.4:c.1136T>G	p.Leu379Arg	p.L379R	ENST00000359013	NM_001024847.2	379	cTc/cGc																																																																															
APC	324	MSKCC	GRCh37	5	112174580	112174580	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0071123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	166	408	0	ENST00000257430.4:c.3289G>T	p.Glu1097Ter	p.E1097*	ENST00000257430	NM_000038.5	1097	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0071123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	515	473	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112128203	112128203	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	93	296	1	ENST00000257430.4:c.706C>T	p.Gln236Ter	p.Q236*	ENST00000257430	NM_000038.5	236	Cag/Tag																																																																															
STK19	8859	MSKCC	GRCh37	6	31948227	31948227	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0071123-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	235	362	0	ENST00000375331.2:c.804-1G>A		p.X268_splice	ENST00000375331	NM_004197.1	268																																																																																
TP53	7157	MSKCC	GRCh37	17	7578440	7578440	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs879254249		P-0071124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	23	448	0	ENST00000269305.4:c.490A>G	p.Lys164Glu	p.K164E	ENST00000269305	NM_001126112.2	164	Aag/Gag																																																																															
MED12	9968	MSKCC	GRCh37	X	70357453	70357453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	19	406	0	ENST00000374080.3:c.5794C>T	p.Pro1932Ser	p.P1932S	ENST00000374080		1932	Ccc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	79	187	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APLNR	187	MSKCC	GRCh37	11	57003976	57003976	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	A	rs746176980		P-0071124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	22	408	0	ENST00000257254.3:c.503G>T	p.Arg168Leu	p.R168L	ENST00000257254		168	cGc/cTc																																																																															
PARK2	5071	MSKCC	GRCh37	6	161807839	161807839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	19	353	0	ENST00000366898.1:c.1154G>T	p.Gly385Val	p.G385V	ENST00000366898	NM_004562.2	385	gGa/gTa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0071164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			91	23	99	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	79	472	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
CDH1	999	MSKCC	GRCh37	16	68857469	68857469	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149127230		P-0071164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	68	328	0	ENST00000261769.5:c.2104G>A	p.Glu702Lys	p.E702K	ENST00000261769	NM_004360.3	702	Gaa/Aaa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0071164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	135	278	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0071164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	57	500	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733223	74733223	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	41	358	0	ENST00000359995.5:c.20del	p.Pro7LeufsTer7	p.P7Lfs*7	ENST00000359995	NM_001195427.1	7	cCt/ct																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118365442	118365442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	76	325	0	ENST00000534358.1:c.5327del	p.Lys1776SerfsTer47	p.K1776Sfs*47	ENST00000534358	NM_005933.3	1775	Aaa/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441788	49441788	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	23	336	0	ENST00000301067.7:c.4196A>G	p.Gln1399Arg	p.Q1399R	ENST00000301067	NM_003482.3	1399	cAg/cGg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2029048	2029048	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773325366		P-0071164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	23	405	0	ENST00000349721.2:c.26C>T	p.Ala9Val	p.A9V	ENST00000349721	NM_003070.3	9	gCg/gTg																																																																															
GAB1	2549	MSKCC	GRCh37	4	144359208	144359208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	54	306	0	ENST00000262994.4:c.650T>C	p.Val217Ala	p.V217A	ENST00000262994	NM_002039.3	217	gTc/gCc																																																																															
NBN	4683	MSKCC	GRCh37	8	90982622	90982622	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	37	316	0	ENST00000265433.3:c.866G>A	p.Trp289Ter	p.W289*	ENST00000265433	NM_002485.4	289	tGg/tAg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514464	103514464	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	73	364	0	ENST00000355739.4:c.965A>T	p.Lys322Met	p.K322M	ENST00000355739	NM_000123.3	322	aAg/aTg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52725375	52725375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	72	443	0	ENST00000322088.6:c.1542G>T	p.Gln514His	p.Q514H	ENST00000322088	NM_014225.5	514	caG/caT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47079223	47079223	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	25	361	0	ENST00000409792.3:c.7283A>T	p.Asp2428Val	p.D2428V	ENST00000409792	NM_014159.6	2428	gAt/gTt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221688	36221688	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	22	411	0	ENST00000222270.7:c.5361del	p.Pro1788ArgfsTer107	p.P1788Rfs*107	ENST00000222270	NM_014727.1	1786	tGg/tg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131953779	131953779	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	72	284	0	ENST00000265335.6:c.3182A>T	p.Glu1061Val	p.E1061V	ENST00000265335		1061	gAa/gTa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661092	227661092	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	78	438	0	ENST00000305123.5:c.2363A>G	p.His788Arg	p.H788R	ENST00000305123	NM_005544.2	788	cAc/cGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106511	27106511	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1041682760		P-0071164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	75	455	1	ENST00000324856.7:c.6122T>C	p.Val2041Ala	p.V2041A	ENST00000324856	NM_006015.4	2041	gTg/gCg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251841	212251841	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770705502		P-0071164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	22	361	0	ENST00000342788.4:c.3218C>T	p.Ala1073Val	p.A1073V	ENST00000342788	NM_005235.2	1073	gCt/gTt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39224410	39224410	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	69	292	0	ENST00000402219.2:c.2948T>C	p.Val983Ala	p.V983A	ENST00000402219	NM_005633.3	983	gTa/gCa																																																																															
CALR	811	MSKCC	GRCh37	19	13051592	13051592	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	83	442	0	ENST00000316448.5:c.851A>T	p.Asp284Val	p.D284V	ENST00000316448	NM_004343.3	284	gAt/gTt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391016	89391016	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	18	323	0	ENST00000336596.2:c.1082T>A	p.Ile361Asn	p.I361N	ENST00000336596	NM_005233.5	361	aTc/aAc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371708	55371708	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	16	417	0	ENST00000297316.4:c.398C>G	p.Pro133Arg	p.P133R	ENST00000297316	NM_022454.3	133	cCc/cGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071165-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	46	213	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0071165-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	62	340	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
SLX4	84464	MSKCC	GRCh37	16	3641255	3641255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071165-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	61	388	0	ENST00000294008.3:c.2384C>T	p.Ser795Leu	p.S795L	ENST00000294008	NM_032444.2	795	tCa/tTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207185	1207186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0071165-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	60	369	0	ENST00000326873.7:c.275_276dup	p.Ala93ArgfsTer4	p.A93Rfs*4	ENST00000326873	NM_000455.4	91	-/GA																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686406	30686406	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0071165-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	63	417	0	ENST00000359013.4:c.337T>C	p.Trp113Arg	p.W113R	ENST00000359013	NM_001024847.2	113	Tgg/Cgg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141595309	141595309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071165-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	66	363	0	ENST00000220592.5:c.124G>T	p.Ala42Ser	p.A42S	ENST00000220592	NM_012154.3	42	Gcc/Tcc																																																																															
MED12	9968	MSKCC	GRCh37	X	70346954	70346954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071165-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	66	377	0	ENST00000374080.3:c.2821C>A	p.Gln941Lys	p.Q941K	ENST00000374080		941	Cag/Aag																																																																															
MED12	9968	MSKCC	GRCh37	X	70354964	70354964	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0071165-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	73	358	0	ENST00000374080.3:c.4886C>A	p.Ser1629Ter	p.S1629*	ENST00000374080		1629	tCa/tAa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2098617	2098617	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1055443730		P-0071169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	259	341	0	ENST00000219476.3:c.1A>G	p.Met1?	p.M1?	ENST00000219476	NM_000548.3	1	Atg/Gtg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871197	35871197	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200373233		P-0071170-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	25	301	0	ENST00000303115.3:c.419G>A	p.Arg140Gln	p.R140Q	ENST00000303115	NM_002185.3	140	cGg/cAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624267	89624267	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071170-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	30	174	0	ENST00000371953.3:c.42del	p.Arg15AspfsTer9	p.R15Dfs*9	ENST00000371953	NM_000314.4	14	aGg/ag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71064766	71064766	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071170-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	41	345	0	ENST00000318789.4:c.908A>G	p.Tyr303Cys	p.Y303C	ENST00000318789	NM_032682.5	303	tAt/tGt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11186745	11186745	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071170-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	132	347	0	ENST00000361445.4:c.6460C>G	p.Gln2154Glu	p.Q2154E	ENST00000361445	NM_004958.3	2154	Cag/Gag																																																																															
RAD21	5885	MSKCC	GRCh37	8	117874083	117874083	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0071170-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	90	220	0	ENST00000297338.2:c.371T>G	p.Leu124Ter	p.L124*	ENST00000297338	NM_006265.2	124	tTa/tGa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519971		P-0071179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	28	363	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40858146	40858146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	21	557	0	ENST00000428826.2:c.1718C>T	p.Pro573Leu	p.P573L	ENST00000428826		573	cCt/cTt																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422267	47422267	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	33	467	0	ENST00000404338.3:c.337del	p.Leu113CysfsTer58	p.L113Cfs*58	ENST00000404338	NM_004491.4	112	gCc/gc																																																																															
AR	367	MSKCC	GRCh37	X	66765370	66765370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	28	345	0	ENST00000374690.3:c.382G>A	p.Glu128Lys	p.E128K	ENST00000374690	NM_000044.3	128	Gag/Aag																																																																															
AGO2	27161	MSKCC	GRCh37	8	141549516	141549520	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGC	CAGGC	GAG			P-0071179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	33	562	1	ENST00000220592.5:c.2068_2072delinsCTC	p.Ala690LeufsTer29	p.A690Lfs*29	ENST00000220592	NM_012154.3	690	GCCTGt/CTCt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519967		P-0071191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	38	493	0	ENST00000347630.2:c.398T>C	p.Phe133Ser	p.F133S	ENST00000347630	NM_001007230.1	133	tTc/tCc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944391	131944391	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	18	288	0	ENST00000265335.6:c.2803A>G	p.Thr935Ala	p.T935A	ENST00000265335		935	Aca/Gca																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376173	118376173	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs782641177		P-0071191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	51	651	0	ENST00000534358.1:c.9566T>C	p.Ile3189Thr	p.I3189T	ENST00000534358	NM_005933.3	3189	aTt/aCt																																																																															
KDR	3791	MSKCC	GRCh37	4	55961059	55961059	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071192-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	25	285	0	ENST00000263923.4:c.2881C>G	p.Arg961Gly	p.R961G	ENST00000263923	NM_002253.2	961	Cgg/Ggg																																																																															
CIC	23152	MSKCC	GRCh37	19	42796236	42796236	+	splice_acceptor_variant	Splice_Site	DEL	A	A	-			P-0071192-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	35	457	0	ENST00000575354.2:c.2887-2del		p.X963_splice	ENST00000575354	NM_015125.3	963																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31022319	31022319	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs907795578		P-0071193-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	49	301	0	ENST00000375687.4:c.1804G>T	p.Glu602Ter	p.E602*	ENST00000375687	NM_015338.5	602	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578175	7578175	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0071205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	203	483	0	ENST00000269305.4:c.672+2T>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
MYCL	4610	MSKCC	GRCh37	1	40367105	40367105	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	106	496	0	ENST00000397332.2:c.92T>A	p.Met31Lys	p.M31K	ENST00000397332	NM_001033082.2	31	aTg/aAg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0071210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	46	206	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577032	7577032	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs786202055		P-0071210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			883	66	335	0	ENST00000269305.4:c.906del	p.Ser303AlafsTer42	p.S303Afs*42	ENST00000269305	NM_001126112.2	302	ggG/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0071210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	24	188	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ERG	2078	MSKCC	GRCh37	21	39772542	39772542	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	56	231	0	ENST00000288319.7:c.699del	p.Asn233LysfsTer58	p.N233Kfs*58	ENST00000288319	NM_182918.3	233	aaT/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0071222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			761	166	536	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
TP63	8626	MSKCC	GRCh37	3	189587118	189587118	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761885185		P-0071222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	39	349	0	ENST00000264731.3:c.1135C>T	p.Arg379Cys	p.R379C	ENST00000264731	NM_003722.4	379	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112174268	112174268	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0071222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	45	479	0	ENST00000257430.4:c.2977A>T	p.Lys993Ter	p.K993*	ENST00000257430	NM_000038.5	993	Aag/Tag																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577161	64577161	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs886039553		P-0071237-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	33	459	0	ENST00000337652.1:c.421C>T	p.Gln141Ter	p.Q141*	ENST00000337652	NM_130803.2	141	Cag/Tag																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313362	30313362	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0071237-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	45	409	0	ENST00000262643.3:c.962G>A	p.Trp321Ter	p.W321*	ENST00000262643	NM_001238.2	321	tGg/tAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830883	72830883	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	72	585	0	ENST00000268489.5:c.5698G>C	p.Glu1900Gln	p.E1900Q	ENST00000268489	NM_006885.3	1900	Gag/Cag																																																																															
RAD50	10111	MSKCC	GRCh37	5	131925458	131925458	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	48	316	0	ENST00000265335.6:c.1381A>G	p.Lys461Glu	p.K461E	ENST00000265335		461	Aag/Gag																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898357	63898357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	31	221	0	ENST00000295900.6:c.83C>T	p.Ala28Val	p.A28V	ENST00000295900	NM_000333.3	28	gCc/gTc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609725	117609725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			49	23	394	0	ENST00000368508.3:c.6974C>T	p.Pro2325Leu	p.P2325L	ENST00000368508	NM_002944.2	2325	cCt/cTt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644907	67644907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	10	476	0	ENST00000264010.4:c.172G>A	p.Val58Ile	p.V58I	ENST00000264010	NM_006565.3	58	Gta/Ata																																																																															
TP53	7157	MSKCC	GRCh37	17	7577510	7577521	+	inframe_deletion	In_Frame_Del	DEL	CAGTGTGATGAT	CAGTGTGATGAT	-			P-0071243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			60	90	370	0	ENST00000269305.4:c.760_771del	p.Ile254_Leu257del	p.I254_L257del	ENST00000269305	NM_001126112.2	254	ATCATCACACTG/-																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14020594	14020594	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1167181199		P-0071246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	59	266	1	ENST00000311895.7:c.565A>G	p.Lys189Glu	p.K189E	ENST00000311895	NM_005236.2	189	Aaa/Gaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0071254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	130	329	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	33	233	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530118	63530118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0071254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	117	344	0	ENST00000307078.5:c.2317G>T	p.Glu773Ter	p.E773*	ENST00000307078	NM_004655.3	773	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577068	7577074	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGAGA	GCGGAGA	-			P-0071254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	152	366	0	ENST00000269305.4:c.864_870del	p.Asn288LysfsTer55	p.N288Kfs*55	ENST00000269305	NM_001126112.2	288	aaTCTCCGC/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0071264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			63	155	250	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0071264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			38	128	144	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0071271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	202	427	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	186	237	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599874	10599875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0071271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	94	382	0	ENST00000171111.5:c.1700_1701dup	p.Val568ThrfsTer28	p.V568Tfs*28	ENST00000171111	NM_203500.1	567	-/AC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0071272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	39	172	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023860	27023861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0071272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	122	292	0	ENST00000324856.7:c.971dup	p.Ala325ArgfsTer75	p.A325Rfs*75	ENST00000324856	NM_006015.4	322	-/G																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039844	47039844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	56	288	1	ENST00000329236.7:c.953G>A	p.Arg318His	p.R318H	ENST00000329236	NM_001204466.1	318	cGc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0071274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	94	225	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0071274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	177	421	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222867	5222867	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1193352037		P-0071274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	49	310	0	ENST00000357368.4:c.2936G>A	p.Arg979Gln	p.R979Q	ENST00000357368	NM_002850.3	979	cGa/cAa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65323396	65323396	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	34	315	0	ENST00000342505.4:c.1401G>A	p.Trp467Ter	p.W467*	ENST00000342505	NM_002227.2	467	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0071276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	66	273	0	ENST00000269305.4:c.379T>A	p.Ser127Thr	p.S127T	ENST00000269305	NM_001126112.2	127	Tcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112175168	112175169	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0071276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	124	314	0	ENST00000257430.4:c.3880_3881del	p.Gln1294GlyfsTer6	p.Q1294Gfs*6	ENST00000257430	NM_000038.5	1293	ACa/a																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936206	150936206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	72	347	0	ENST00000271640.5:c.3658C>T	p.Arg1220Cys	p.R1220C	ENST00000271640	NM_001145415.1	1220	Cgc/Tgc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976457	18976457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1337899219		P-0071276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	47	330	0	ENST00000262803.5:c.3107C>T	p.Pro1036Leu	p.P1036L	ENST00000262803	NM_002911.3	1036	cCc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	33	240	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0071277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	46	305	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541478	187541478	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759187154		P-0071277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	50	408	0	ENST00000441802.2:c.6262G>A	p.Ala2088Thr	p.A2088T	ENST00000441802	NM_005245.3	2088	Gcc/Acc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974699	21974700	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0071277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	34	425	0	ENST00000304494.5:c.126_127dup	p.Ser43IlefsTer11	p.S43Ifs*11	ENST00000304494	NM_000077.4	43	agt/aTAgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0071279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	144	459	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
ATR	545	MSKCC	GRCh37	3	142188981	142188981	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	111	262	0	ENST00000350721.4:c.6266G>C	p.Arg2089Pro	p.R2089P	ENST00000350721	NM_001184.3	2089	cGa/cCa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098957	178098957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	311	303	0	ENST00000397062.3:c.88C>T	p.Leu30Phe	p.L30F	ENST00000397062	NM_006164.4	30	Ctt/Ttt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024029	27024029	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0071279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			107	54	181	0	ENST00000324856.7:c.1135C>T	p.Gln379Ter	p.Q379*	ENST00000324856	NM_006015.4	379	Cag/Tag																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374920	45374920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	160	332	0	ENST00000262160.6:c.923C>T	p.Ser308Leu	p.S308L	ENST00000262160	NM_005901.5	308	tCa/tTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444879	49444879	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370622706		P-0071279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	52	406	0	ENST00000301067.7:c.2587C>T	p.Arg863Trp	p.R863W	ENST00000301067	NM_003482.3	863	Cgg/Tgg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136771	2136771	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886051796		P-0071279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	123	400	0	ENST00000219476.3:c.4888G>A	p.Val1630Met	p.V1630M	ENST00000219476	NM_000548.3	1630	Gtg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992124	72992124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	112	420	0	ENST00000268489.5:c.1921G>C	p.Glu641Gln	p.E641Q	ENST00000268489	NM_006885.3	641	Gag/Cag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098749	178098749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	274	315	0	ENST00000397062.3:c.296C>T	p.Ser99Phe	p.S99F	ENST00000397062	NM_006164.4	99	tCt/tTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992655	72992655	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	159	379	0	ENST00000268489.5:c.1390G>C	p.Glu464Gln	p.E464Q	ENST00000268489	NM_006885.3	464	Gag/Cag																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149290722	149290722	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs749185901		P-0071279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	50	283	0	ENST00000360632.3:c.497T>C	p.Met166Thr	p.M166T	ENST00000360632	NM_015472.4	166	aTg/aCg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800529	32800529	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0071279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	186	426	0	ENST00000374899.4:c.1018C>T	p.Gln340Ter	p.Q340*	ENST00000374899	NM_018833.2	340	Cag/Tag																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907083	101907083	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	111	300	0	ENST00000374994.4:c.1043G>T	p.Cys348Phe	p.C348F	ENST00000374994	NM_004612.2	348	tGt/tTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141409	11141409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	120	335	0	ENST00000344626.4:c.3386C>A	p.Thr1129Asn	p.T1129N	ENST00000344626	NM_003072.3	1129	aCc/aAc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056024	26056024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	113	358	0	ENST00000343677.2:c.633G>T	p.Lys211Asn	p.K211N	ENST00000343677	NM_005319.3	211	aaG/aaT																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68878147	68878147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	96	306	0	ENST00000487270.1:c.860C>T	p.Ser287Phe	p.S287F	ENST00000487270	NM_133509.3	287	tCt/tTt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212495189	212495189	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0071279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	114	284	0	ENST00000342788.4:c.2077G>C	p.Glu693Gln	p.E693Q	ENST00000342788	NM_005235.2	693	Gag/Cag																																																																															
CALR	811	MSKCC	GRCh37	19	13050043	13050043	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1335654763		P-0071279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	113	315	0	ENST00000316448.5:c.187G>A	p.Asp63Asn	p.D63N	ENST00000316448	NM_004343.3	63	Gat/Aat																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096706	178096706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	124	305	0	ENST00000397062.3:c.625G>A	p.Glu209Lys	p.E209K	ENST00000397062	NM_006164.4	209	Gag/Aag																																																																															
ATRX	546	MSKCC	GRCh37	X	76938520	76938520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	112	315	0	ENST00000373344.5:c.2228G>A	p.Arg743Lys	p.R743K	ENST00000373344	NM_000489.3	743	aGg/aAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76937793	76937793	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	174	343	0	ENST00000373344.5:c.2955C>A	p.Ser985Arg	p.S985R	ENST00000373344	NM_000489.3	985	agC/agA																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0071313-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	44	638	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577095	7577095	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519984		P-0071313-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	31	637	0	ENST00000269305.4:c.843C>G	p.Asp281Glu	p.D281E	ENST00000269305	NM_001126112.2	281	gaC/gaG																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071313-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	15	529	0	ENST00000397062.3:c.92G>C	p.Gly31Ala	p.G31A	ENST00000397062	NM_006164.4	31	gGa/gCa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244302	153244302	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0071313-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	25	538	0	ENST00000281708.4:c.1856-1G>C		p.X619_splice	ENST00000281708	NM_033632.3	619																																																																																
RAD52	5893	MSKCC	GRCh37	12	1040426	1040426	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071313-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	29	506	0	ENST00000358495.3:c.146C>G	p.Pro49Arg	p.P49R	ENST00000358495	NM_134424.2	49	cCa/cGa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161742	47161742	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0071315-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	101	665	1	ENST00000409792.3:c.4384G>T	p.Glu1462Ter	p.E1462*	ENST00000409792	NM_014159.6	1462	Gaa/Taa																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260179	149260179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071315-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	93	574	0	ENST00000360632.3:c.714G>T	p.Gln238His	p.Q238H	ENST00000360632	NM_015472.4	238	caG/caT																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713559	30713559	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0071315-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	107	716	0	ENST00000359013.4:c.959C>G	p.Ser320Ter	p.S320*	ENST00000359013	NM_001024847.2	320	tCa/tGa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31394020	31394020	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0071315-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	63	408	0	ENST00000328111.2:c.2307G>C	p.Lys769Asn	p.K769N	ENST00000328111	NM_006892.3	769	aaG/aaC																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260190	149260194	+	missense_variant	Missense_Mutation	ONP	GTTTC	GTTTC	TTTTG			P-0071315-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	92	597	0	ENST00000360632.3:c.699_703delinsCAAAA	p.Gln233_Leu235delinsHisLysMet	p.Q233_L235delinsHKM	ENST00000360632	NM_015472.4	233	caGAAACtg/caCAAAAtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0071322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	97	603	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782068	9782089	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCGTCAAGCTGAGCTCTCAG	CTTCGTCAAGCTGAGCTCTCAG	-			P-0071351-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	262	405	0	ENST00000377346.4:c.2091_2112del	p.Asp697GlufsTer11	p.D697Efs*11	ENST00000377346	NM_005026.3	697	gaCTTCGTCAAGCTGAGCTCTCAG/ga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675570	86675571	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0071376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	25	121	0	ENST00000274376.6:c.2513dup	p.Asn838LysfsTer2	p.N838Kfs*2	ENST00000274376	NM_002890.2	836	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579345	7579345	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	112	536	0	ENST00000269305.4:c.342del	p.Leu114PhefsTer9	p.L114Ffs*9	ENST00000269305	NM_001126112.2	114	ttG/tt																																																																															
NF1	4763	MSKCC	GRCh37	17	29677307	29677312	+	frameshift_variant	Frame_Shift_Del	DEL	TCCCAT	TCCCAT	CCCAA			P-0071376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	43	201	0	ENST00000358273.4:c.7428_7433delinsCCCAA	p.His2479IlefsTer10	p.H2479Ifs*10	ENST00000358273	NM_001042492.2	2476	taTCCCATt/taCCCAAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0071377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			732	306	574	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145431	58145431	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11547328		P-0071377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	165	518	1	ENST00000257904.6:c.70C>T	p.Arg24Cys	p.R24C	ENST00000257904	NM_000075.3	24	Cgt/Tgt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740713	145740713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776602501		P-0071377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1064	88	668	0	ENST00000428558.2:c.1387G>A	p.Ala463Thr	p.A463T	ENST00000428558	NM_004260.3	463	Gca/Aca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5243997	5243997	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			887	66	573	0	ENST00000357368.4:c.1485G>C	p.Glu495Asp	p.E495D	ENST00000357368	NM_002850.3	495	gaG/gaC																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039686	47039686	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0071422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	20	67	0	ENST00000329236.7:c.904G>T	p.Glu302Ter	p.E302*	ENST00000329236	NM_001204466.1	302	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	10	48	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981765	70981765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0071422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	18	80	0	ENST00000276594.2:c.331G>T	p.Val111Leu	p.V111L	ENST00000276594	NM_024504.3	111	Gtg/Ttg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0069872-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			581	35	551	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0069872-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			223	26	340	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216529	7216529	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0069872-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			507	63	684	0	ENST00000380728.2:c.804+2T>C		p.X268_splice	ENST00000380728		268																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48581360	48581361	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0069872-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	31	493	0	ENST00000342988.3:c.665dup	p.Ser223LysfsTer12	p.S223Kfs*12	ENST00000342988	NM_005359.5	222	aca/aCca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303035	15303035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069872-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			613	68	736	0	ENST00000263388.2:c.415G>T	p.Asp139Tyr	p.D139Y	ENST00000263388	NM_000435.2	139	Gat/Tat																																																																															
SOS1	6654	MSKCC	GRCh37	2	39251246	39251246	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069872-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			261	25	362	0	ENST00000402219.2:c.1107del	p.Asp369GlufsTer5	p.D369Efs*5	ENST00000402219	NM_005633.3	369	gaC/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0070465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	146	343	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0070465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	273	364	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246078900	246078900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1367184255		P-0070465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	113	353	1	ENST00000388985.4:c.745C>T	p.Arg249Cys	p.R249C	ENST00000388985		249	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0070465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	178	276	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907099	101907099	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	102	298	0	ENST00000374994.4:c.1059del	p.Leu354TrpfsTer3	p.L354Wfs*3	ENST00000374994	NM_004612.2	353	ggA/gg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111854391		P-0070500-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	87	135	0	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs786201838		P-0070500-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			534	198	608	0	ENST00000269305.4:c.578A>C	p.His193Pro	p.H193P	ENST00000269305	NM_001126112.2	193	cAt/cCt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52712614	52712614	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0070500-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			274	66	157	0	ENST00000394830.3:c.139-1G>C		p.X47_splice	ENST00000394830	NM_018313.4	47																																																																																
PAK1	5058	MSKCC	GRCh37	11	77103508	77103508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070500-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			646	163	263	0	ENST00000356341.3:c.58A>G	p.Thr20Ala	p.T20A	ENST00000356341	NM_002576.4	20	Acc/Gcc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480441	89480441	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070500-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			569	181	233	0	ENST00000336596.2:c.2278T>A	p.Cys760Ser	p.C760S	ENST00000336596	NM_005233.5	760	Tgt/Agt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427102	49427102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070500-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			564	92	683	0	ENST00000301067.7:c.11386C>T	p.Gln3796Ter	p.Q3796*	ENST00000301067	NM_003482.3	3796	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115954	8115954	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070500-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			580	110	572	0	ENST00000346208.3:c.1300C>G	p.His434Asp	p.H434D	ENST00000346208		434	Cac/Gac																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690142	33690142	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070500-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			335	107	197	0	ENST00000308377.4:c.685A>T	p.Arg229Trp	p.R229W	ENST00000308377	NM_152270.3	229	Agg/Tgg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271963	15271963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070500-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			499	109	682	0	ENST00000263388.2:c.6476G>T	p.Ser2159Ile	p.S2159I	ENST00000263388	NM_000435.2	2159	aGc/aTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295772	1295772	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0070500-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			827	120	724	0				ENST00000310581	NM_198253.2																																																																																	
EGFR	1956	MSKCC	GRCh37	7	55270283	55270283	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070500-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			672	201	594	0	ENST00000275493.2:c.3236A>G	p.Glu1079Gly	p.E1079G	ENST00000275493	NM_005228.3	1079	gAg/gGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0070540-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			316	235	329	0	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga																																																																															
RARA	5914	MSKCC	GRCh37	17	38487553	38487553	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070540-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			455	308	441	0	ENST00000254066.5:c.83T>C	p.Phe28Ser	p.F28S	ENST00000254066	NM_000964.3	28	tTc/tCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519986		P-0070925-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	184	227	0	ENST00000269305.4:c.809T>C	p.Phe270Ser	p.F270S	ENST00000269305	NM_001126112.2	270	tTt/tCt																																																																															
POLE	5426	MSKCC	GRCh37	12	133220464	133220464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	33	135	0	ENST00000320574.5:c.4249G>A	p.Glu1417Lys	p.E1417K	ENST00000320574	NM_006231.2	1417	Gag/Aag																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876344	35876344	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	67	164	0	ENST00000303115.3:c.1136C>A	p.Ala379Asp	p.A379D	ENST00000303115	NM_002185.3	379	gCc/gAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711969	89711969	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	56	61	0	ENST00000371953.3:c.587A>C	p.His196Pro	p.H196P	ENST00000371953	NM_000314.4	196	cAc/cCc																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631549	67631549	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771718746		P-0070926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	55	73	0	ENST00000272342.5:c.1735G>A	p.Asp579Asn	p.D579N	ENST00000272342	NM_019002.3	579	Gat/Aat																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15308372	15308372	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	51	144	0	ENST00000263388.2:c.136G>T	p.Gly46Ter	p.G46*	ENST00000263388	NM_000435.2	46	Gga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214794	36214794	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0070926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	20	105	0	ENST00000222270.7:c.3220A>T	p.Lys1074Ter	p.K1074*	ENST00000222270	NM_014727.1	1074	Aag/Tag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3828185	3828185	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0070926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	18	66	0	ENST00000262367.5:c.1942-2A>G		p.X648_splice	ENST00000262367	NM_004380.2	648																																																																																
WHSC1	7468	MSKCC	GRCh37	4	1962791	1962791	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	43	127	0	ENST00000382895.3:c.3285G>T	p.Glu1095Asp	p.E1095D	ENST00000382895	NM_133330.2	1095	gaG/gaT																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78923241	78923241	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0070926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	43	126	0	ENST00000306801.3:c.3266-2A>G		p.X1089_splice	ENST00000306801	NM_020761.2	1089																																																																																
MYC	4609	MSKCC	GRCh37	8	128750545	128750545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	92	141	0	ENST00000377970.2:c.82G>A	p.Asp28Asn	p.D28N	ENST00000377970	NM_002467.4	28	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0070953-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	120	445	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070953-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	72	258	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GNA11	2767	MSKCC	GRCh37	19	3118934	3118934	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	160	325	0	ENST00000078429.4:c.623del	p.Gly208AlafsTer16	p.G208Afs*16	ENST00000078429	NM_002067.2	206	gtG/gt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	121	224	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	100	165	0	ENST00000268712.3:c.1573dup	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	110	369	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	80	146	0	ENST00000303115.3:c.361del	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	115	249	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	71	168	0	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	151	327	0	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	255	234	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
APC	324	MSKCC	GRCh37	5	112151245	112151246	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	76	198	0	ENST00000257430.4:c.893_894del	p.His298LeufsTer28	p.H298Lfs*28	ENST00000257430	NM_000038.5	296	agCAca/agca																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136196	64136196	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1398172112		P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	142	363	0	ENST00000334205.4:c.1355G>A	p.Arg452His	p.R452H	ENST00000334205	NM_003942.2	452	cGc/cAc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2039776	2039777	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAG	rs745316697		P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	100	391	1	ENST00000349721.2:c.705_707dup	p.Gln238dup	p.Q238dup	ENST00000349721	NM_003070.3	238	-/CAG																																																																															
APC	324	MSKCC	GRCh37	5	112175100	112175101	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	101	216	0	ENST00000257430.4:c.3814dup	p.Ser1272PhefsTer4	p.S1272Ffs*4	ENST00000257430	NM_000038.5	1270	tgt/tgTt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	197	154	0	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324892	31324892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	82	162	0	ENST00000412585.2:c.44del	p.Ala15GlyfsTer5	p.A15Gfs*5	ENST00000412585	NM_005514.6	15	gCg/gg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910551	29910551	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	83	224	0	ENST00000376809.5:c.91T>C	p.Tyr31His	p.Y31H	ENST00000376809	NM_002116.7	31	Tat/Cat																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258350	16258350	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756861745		P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	169	395	0	ENST00000375759.3:c.5615C>T	p.Ala1872Val	p.A1872V	ENST00000375759	NM_015001.2	1872	gCa/gTa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323362	31323363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	88	218	0	ENST00000412585.2:c.626dup	p.Thr211AspfsTer10	p.T211Dfs*10	ENST00000412585	NM_005514.6	209	cca/ccCa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962298	2962298	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769577430		P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	101	279	1	ENST00000396946.4:c.2239G>A	p.Val747Ile	p.V747I	ENST00000396946	NM_032415.4	747	Gtc/Atc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815712	32815712	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1374606443		P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	84	326	0	ENST00000354258.4:c.1904G>A	p.Arg635His	p.R635H	ENST00000354258	NM_000593.5	635	cGc/cAc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1620979	1620979	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1329397192		P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	166	455	1	ENST00000344749.5:c.1081del	p.Gln361ArgfsTer33	p.Q361Rfs*33	ENST00000344749	NM_001136139.2	361	Cag/ag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129917	55129917	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1449637193		P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	148	309	0	ENST00000257290.5:c.451C>T	p.Arg151Cys	p.R151C	ENST00000257290	NM_006206.4	151	Cgc/Tgc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953253	81953253	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	116	287	0	ENST00000359376.3:c.2219T>C	p.Leu740Pro	p.L740P	ENST00000359376	NM_002661.3	740	cTg/cCg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37884191	37884191	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs568793816		P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	185	416	0	ENST00000269571.5:c.3662A>G	p.Tyr1221Cys	p.Y1221C	ENST00000269571		1221	tAt/tGt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533860	63533860	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751843834		P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	147	307	0	ENST00000307078.5:c.1294G>A	p.Glu432Lys	p.E432K	ENST00000307078	NM_004655.3	432	Gag/Aag																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345798	152345798	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759300252		P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	114	215	0	ENST00000359321.1:c.772C>T	p.Arg258Cys	p.R258C	ENST00000359321	NM_005431.1	258	Cgt/Tgt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671741	67671741	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1247514121		P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	172	308	0	ENST00000264010.4:c.2150C>T	p.Thr717Met	p.T717M	ENST00000264010	NM_006565.3	717	aCg/aTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67575489	67575489	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs547196342		P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	156	263	0	ENST00000274335.5:c.562C>T	p.Arg188Cys	p.R188C	ENST00000274335		188	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244109	5244109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	137	383	0	ENST00000357368.4:c.1373G>A	p.Arg458His	p.R458H	ENST00000357368	NM_002850.3	458	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	91	165	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	117	404	2	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399420	139399420	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	88	395	1	ENST00000277541.6:c.4723G>C	p.Val1575Leu	p.V1575L	ENST00000277541	NM_017617.3	1575	Gtg/Ctg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	296	276	7	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526597	31526597	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	20	238	0	ENST00000344624.3:c.443del	p.Pro148LeufsTer78	p.P148Lfs*78	ENST00000344624		148	cCt/ct																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553614	106553614	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs945524210		P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	206	369	0	ENST00000369096.4:c.1579C>T	p.His527Tyr	p.H527Y	ENST00000369096	NM_001198.3	527	Cat/Tat																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99250796	99250796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	130	308	0	ENST00000268035.6:c.100G>A	p.Gly34Arg	p.G34R	ENST00000268035	NM_000875.3	34	Ggg/Agg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244151	153244152	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	191	386	0	ENST00000281708.4:c.2005_2006insT	p.Gly669ValfsTer25	p.G669Vfs*25	ENST00000281708	NM_033632.3	669	ggg/gTgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244193	5244193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	116	386	0	ENST00000357368.4:c.1289C>A	p.Pro430Gln	p.P430Q	ENST00000357368	NM_002850.3	430	cCg/cAg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32164767	32164767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	195	343	0	ENST00000375023.3:c.5135C>T	p.Ala1712Val	p.A1712V	ENST00000375023	NM_004557.3	1712	gCg/gTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152073	11152073	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	188	343	0	ENST00000344626.4:c.4261T>G	p.Ser1421Ala	p.S1421A	ENST00000344626	NM_003072.3	1421	Tcc/Gcc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15952239	15952240	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	152	321	0	ENST00000268712.3:c.6455dup	p.Pro2153ThrfsTer8	p.P2153Tfs*8	ENST00000268712	NM_006311.3	2152	cca/ccCa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412272	139412272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769569937		P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	165	342	0	ENST00000277541.6:c.1373C>T	p.Ser458Leu	p.S458L	ENST00000277541	NM_017617.3	458	tCg/tTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133218399	133218399	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	61	286	0	ENST00000320574.5:c.5212A>G	p.Thr1738Ala	p.T1738A	ENST00000320574	NM_006231.2	1738	Acc/Gcc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135782118	135782120	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTT	CTT	-	rs1233867963		P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	47	145	0	ENST00000298552.3:c.1436_1438del	p.Glu479del	p.E479del	ENST00000298552	NM_001162426.1	479	gAAGct/gct																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570144	95570144	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs886037706		P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	154	291	0	ENST00000343455.3:c.3589del	p.Cys1197AlafsTer6	p.C1197Afs*6	ENST00000343455	NM_177438.2	1197	Tgc/gc																																																																															
BRAF	673	MSKCC	GRCh37	7	140508744	140508744	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	15	155	0	ENST00000288602.6:c.556A>C	p.Met186Leu	p.M186L	ENST00000288602	NM_004333.4	186	Atg/Ctg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89816175	89816175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	123	340	0	ENST00000389301.3:c.3202A>G	p.Ser1068Gly	p.S1068G	ENST00000389301	NM_000135.2	1068	Agc/Ggc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459708	149459708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	180	418	0	ENST00000286301.3:c.499G>A	p.Ala167Thr	p.A167T	ENST00000286301	NM_005211.3	167	Gcc/Acc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195466	102195466	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	163	271	0	ENST00000263464.3:c.226T>A	p.Trp76Arg	p.W76R	ENST00000263464	NM_001165.4	76	Tgg/Agg																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46597581	46597581	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	193	303	0	ENST00000262741.5:c.44G>A	p.Trp15Ter	p.W15*	ENST00000262741	NM_003629.3	15	tGg/tAg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464943	120464944	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	74	318	0	ENST00000256646.2:c.5127_5128dup	p.Trp1710SerfsTer29	p.W1710Sfs*29	ENST00000256646	NM_024408.3	1710	tgg/tCTgg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52723016	52723016	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	156	309	0	ENST00000322088.6:c.1201T>A	p.Ser401Thr	p.S401T	ENST00000322088	NM_014225.5	401	Tcc/Acc																																																																															
YES1	7525	MSKCC	GRCh37	18	743322	743322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	132	277	0	ENST00000314574.4:c.818C>A	p.Pro273His	p.P273H	ENST00000314574	NM_005433.3	273	cCt/cAt																																																																															
CTR9	9646	MSKCC	GRCh37	11	10790016	10790016	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	158	236	0	ENST00000361367.2:c.2087A>G	p.Gln696Arg	p.Q696R	ENST00000361367	NM_014633.3	696	cAg/cGg																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80430541	80430541	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	12	87	0	ENST00000286548.4:c.467C>A	p.Ser156Tyr	p.S156Y	ENST00000286548	NM_002072.3	156	tCt/tAt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957536	1957536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	130	299	0	ENST00000382895.3:c.2635C>T	p.His879Tyr	p.H879Y	ENST00000382895	NM_133330.2	879	Cac/Tac																																																																															
ATR	545	MSKCC	GRCh37	3	142275275	142275275	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	109	188	2	ENST00000350721.4:c.2028del	p.Phe676LeufsTer18	p.F676Lfs*18	ENST00000350721	NM_001184.3	676	ttT/tt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981635	70981635	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0071028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	127	315	0	ENST00000276594.2:c.461del	p.Pro154LeufsTer11	p.P154Lfs*11	ENST00000276594	NM_024504.3	154	cCt/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0071030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	281	358	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0071030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	249	321	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0071030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	133	255	0	ENST00000257430.4:c.4063dup	p.Ser1355PhefsTer20	p.S1355Ffs*20	ENST00000257430	NM_000038.5	1353	-/T																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66525100	66525100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0071030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	74	238	0	ENST00000358598.2:c.859G>A	p.Glu287Lys	p.E287K	ENST00000358598	NM_212471.2	287	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0071030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	162	153	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175834	112175835	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0071030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	247	257	0	ENST00000257430.4:c.4544_4545del	p.Phe1515TyrfsTer17	p.F1515Yfs*17	ENST00000257430	NM_000038.5	1515	TTt/t																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0069215-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			321	55	382	0				ENST00000310581	NM_198253.2																																																																																	
ATM	472	MSKCC	GRCh37	11	108216624	108216626	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs1340074139		P-0069215-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			251	36	249	0	ENST00000278616.4:c.8578_8580del	p.Ser2860del	p.S2860del	ENST00000278616	NM_000051.3	2858	aCTTct/act																																																																															
TP53	7157	MSKCC	GRCh37	17	7579356	7579356	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069215-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			570	83	460	0	ENST00000269305.4:c.331del	p.Leu111TrpfsTer12	p.L111Wfs*12	ENST00000269305	NM_001126112.2	111	Ctg/tg																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793218	33793218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069215-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			432	48	412	0	ENST00000498907.2:c.103C>T	p.Arg35Trp	p.R35W	ENST00000498907	NM_004364.3	35	Cgg/Tgg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266790	198266790	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069215-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			424	53	340	0	ENST00000335508.6:c.2142A>C	p.Glu714Asp	p.E714D	ENST00000335508	NM_012433.2	714	gaA/gaC																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0069582-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			900	78	409	3	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182641	38182641	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs387907272		P-0069582-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			768	108	362	6	ENST00000396334.3:c.794T>C	p.Leu265Pro	p.L265P	ENST00000396334	NM_002468.4	265	cTg/cCg																																																																															
CD79B	974	MSKCC	GRCh37	17	62006799	62006799	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069582-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			920	114	415	6	ENST00000392795.3:c.589T>G	p.Tyr197Asp	p.Y197D	ENST00000392795	NM_001039933.1	197	Tac/Gac																																																																															
MITF	4286	MSKCC	GRCh37	3	70005663	70005663	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069582-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			441	45	282	0	ENST00000352241.4:c.995T>A	p.Ile332Asn	p.I332N	ENST00000352241	NM_198159.2	332	aTt/aAt																																																																															
CD79B	974	MSKCC	GRCh37	17	62007580	62007607	+	protein_altering_variant	In_Frame_Del	DEL	CGGCCCTTTTCCAGCTTCAGCTGCTGGG	CGGCCCTTTTCCAGCTTCAGCTGCTGGG	TGGC			P-0069582-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			950	107	451	2	ENST00000392795.3:c.260_287delinsGCCA	p.Pro87_Arg96delinsArgHis	p.P87_R96delinsRH	ENST00000392795	NM_001039933.1	87	cCCCAGCAGCTGAAGCTGGAAAAGGGCCGc/cGCCAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070130-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			383	131	235	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440930	56440930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070130-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			441	178	416	0	ENST00000407977.2:c.407C>A	p.Ala136Asp	p.A136D	ENST00000407977		136	gCt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438022	49438022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1157281284		P-0070130-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			569	161	468	0	ENST00000301067.7:c.5149C>T	p.Gln1717Ter	p.Q1717*	ENST00000301067	NM_003482.3	1717	Cag/Tag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519967		P-0070132-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	163	402	10	ENST00000347630.2:c.398T>C	p.Phe133Ser	p.F133S	ENST00000347630	NM_001007230.1	133	tTc/tCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519999		P-0070132-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			264	201	333	21	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78896587	78896587	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144632265		P-0070132-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			339	160	377	21	ENST00000306801.3:c.2584G>A	p.Ala862Thr	p.A862T	ENST00000306801	NM_020761.2	862	Gcc/Acc																																																																															
AXL	558	MSKCC	GRCh37	19	41726544	41726544	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs891614619		P-0070132-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			409	86	338	11	ENST00000301178.4:c.89C>T	p.Thr30Met	p.T30M	ENST00000301178	NM_021913.4	30	aCg/aTg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500570	149500570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377442091		P-0070132-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			547	234	952	0	ENST00000261799.4:c.2467G>A	p.Val823Ile	p.V823I	ENST00000261799	NM_002609.3	823	Gtc/Atc																																																																															
KIT	3815	MSKCC	GRCh37	4	55599275	55599275	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070132-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			194	33	312	6	ENST00000288135.5:c.2401A>T	p.Thr801Ser	p.T801S	ENST00000288135	NM_000222.2	801	Act/Tct																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291793	15291793	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070132-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			635	42	446	0	ENST00000263388.2:c.2973C>G	p.Ser991Arg	p.S991R	ENST00000263388	NM_000435.2	991	agC/agG																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254618	16254618	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070132-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	57	335	2	ENST00000375759.3:c.1883A>T	p.Gln628Leu	p.Q628L	ENST00000375759	NM_015001.2	628	cAa/cTa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864353	162864353	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070132-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	37	319	0	ENST00000366898.1:c.160T>A	p.Trp54Arg	p.W54R	ENST00000366898	NM_004562.2	54	Tgg/Agg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209108158	209108159	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0070132-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			264	138	275	12	ENST00000345146.2:c.690dup	p.Tyr231IlefsTer2	p.Y231Ifs*2	ENST00000345146	NM_005896.2	230	-/A																																																																															
SDHC	6391	MSKCC	GRCh37	1	161326525	161326550	+	frameshift_variant	Frame_Shift_Del	DEL	GGAACTTGTGAAGTCCCTGTGTCTGG	GGAACTTGTGAAGTCCCTGTGTCTGG	-			P-0070132-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			137	12	97	0	ENST00000367975.2:c.302_327del	p.Glu101AlafsTer8	p.E101Afs*8	ENST00000367975	NM_003001.3	100	ttGGAACTTGTGAAGTCCCTGTGTCTGGgg/ttgg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870602	12870855	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	CCTGCGCGCTCCTAGAGCTCGGGCCGTGGCTCGTCGGGGTCTGTGTCTTTTGGCTCCGAGGGCAGTCGCTGGGCTTCCGAGAGGGGTTCGGGCTGCGTAGGGGCGCTTTGTTTTGTTCGGTTTTGTTTTTTTGAGAGTGCGAGAGAGGCGGTCGTGCAGACCCGGGAGAAAGATGTCAAACGTGCGAGTGTCTAACGGGAGCCCTAGCCTGGAGCGGATGGACGCCAGGCAGGCGGAGCACCCCAAGCCCTCGG	CCTGCGCGCTCCTAGAGCTCGGGCCGTGGCTCGTCGGGGTCTGTGTCTTTTGGCTCCGAGGGCAGTCGCTGGGCTTCCGAGAGGGGTTCGGGCTGCGTAGGGGCGCTTTGTTTTGTTCGGTTTTGTTTTTTTGAGAGTGCGAGAGAGGCGGTCGTGCAGACCCGGGAGAAAGATGTCAAACGTGCGAGTGTCTAACGGGAGCCCTAGCCTGGAGCGGATGGACGCCAGGCAGGCGGAGCACCCCAAGCCCTCGG	-			P-0070132-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			80	167	79	11	ENST00000228872.4:c.-167_87del		p.*56*	ENST00000228872	NM_004064.3																																																																																	
PBRM1	55193	MSKCC	GRCh37	3	52643845	52643863	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	AATATGGCACTGAGGCGGC	AATATGGCACTGAGGCGGC	TCAGTATAGTATACTGATAA			P-0070132-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			431	26	335	2	ENST00000394830.3:c.2033_2051delinsTTATCAGTATACTATACTGA	p.Arg678LeufsTer7	p.R678Lfs*7	ENST00000394830	NM_018313.4	678	cGCCGCCTCAGTGCCATATTt/cTTATCAGTATACTATACTGAt																																																																															
TP63	8626	MSKCC	GRCh37	3	189590765	189590772	+	missense_variant	Missense_Mutation	ONP	CAGCACTT	CAGCACTT	TTATGCTC			P-0070132-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			525	39	503	3	ENST00000264731.3:c.1330_1337delinsTTATGCTC	p.Gln444_Leu446delinsLeuCysSer	p.Q444_L446delinsLCS	ENST00000264731	NM_003722.4	444	CAGCACTTa/TTATGCTCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0070199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	76	369	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986981	36986981	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	69	295	0	ENST00000354822.5:c.708G>T	p.Lys236Asn	p.K236N	ENST00000354822	NM_001079668.2	236	aaG/aaT																																																																															
MLH1	4292	MSKCC	GRCh37	3	37089169	37089169	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	117	312	0	ENST00000231790.2:c.1891G>C	p.Asp631His	p.D631H	ENST00000231790	NM_000249.3	631	Gat/Cat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27102196	27102196	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0070308-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			126	182	368	0	ENST00000324856.7:c.5122C>T	p.Gln1708Ter	p.Q1708*	ENST00000324856	NM_006015.4	1708	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577599	7577600	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0070308-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			130	154	353	0	ENST00000269305.4:c.681dup	p.Asp228Ter	p.D228*	ENST00000269305	NM_001126112.2	227	-/T																																																																															
TP63	8626	MSKCC	GRCh37	3	189612080	189612080	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070308-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	175	438	0	ENST00000264731.3:c.1832C>G	p.Ser611Cys	p.S611C	ENST00000264731	NM_003722.4	611	tCc/tGc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259987	16259987	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070308-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			153	231	493	0	ENST00000375759.3:c.7252G>T	p.Glu2418Ter	p.E2418*	ENST00000375759	NM_015001.2	2418	Gag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42040946	42040946	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070308-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			434	153	428	0	ENST00000219905.7:c.5324G>C	p.Arg1775Thr	p.R1775T	ENST00000219905	NM_001164273.1	1775	aGa/aCa																																																																															
BLM	641	MSKCC	GRCh37	15	91326139	91326139	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070308-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			208	95	348	0	ENST00000355112.3:c.2643G>T	p.Trp881Cys	p.W881C	ENST00000355112	NM_000057.2	881	tgG/tgT																																																																															
NF1	4763	MSKCC	GRCh37	17	29587397	29587397	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070308-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			107	118	299	0	ENST00000358273.4:c.4441G>C	p.Asp1481His	p.D1481H	ENST00000358273	NM_001042492.2	1481	Gat/Cat																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59793421	59793421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070308-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			53	125	159	0	ENST00000259008.2:c.2383G>A	p.Glu795Lys	p.E795K	ENST00000259008	NM_032043.2	795	Gaa/Aaa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311704	15311704	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070308-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			222	139	436	2	ENST00000263388.2:c.13del	p.Ala5ProfsTer29	p.A5Pfs*29	ENST00000263388	NM_000435.2	5	Gcc/cc																																																																															
MITF	4286	MSKCC	GRCh37	3	69988318	69988318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070308-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			459	33	303	0	ENST00000352241.4:c.652G>A	p.Ala218Thr	p.A218T	ENST00000352241	NM_198159.2	218	Gcg/Acg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153259034	153259034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070308-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			178	133	367	0	ENST00000281708.4:c.781G>A	p.Glu261Lys	p.E261K	ENST00000281708	NM_033632.3	261	Gaa/Aaa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508176	106508176	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752039271		P-0070502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	88	419	0	ENST00000359195.3:c.170C>T	p.Ala57Val	p.A57V	ENST00000359195	NM_002649.2	57	gCg/gTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653857	89653857	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	64	228	0	ENST00000371953.3:c.155A>G	p.Asp52Gly	p.D52G	ENST00000371953	NM_000314.4	52	gAt/gGt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	128	356	0	ENST00000347630.2:c.305T>C	p.Phe102Ser	p.F102S	ENST00000347630	NM_001007230.1	102	tTc/tCc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44945154	44945154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	106	134	0	ENST00000377967.4:c.3478G>A	p.Gly1160Ser	p.G1160S	ENST00000377967	NM_021140.2	1160	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0070649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	23	655	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0070649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	21	230	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804154	46804154	+	stop_lost	Nonstop_Mutation	SNP	A	A	C			P-0070829-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	73	432	0	ENST00000290295.7:c.853T>G	p.Ter285GluextTer32	p.*285Eext*32	ENST00000290295	NM_006361.5	285	Taa/Gaa																																																																															
CCND3	896	MSKCC	GRCh37	6	41908268	41908268	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070829-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	37	463	0	ENST00000372991.4:c.254T>G	p.Leu85Arg	p.L85R	ENST00000372991	NM_001760.3	85	cTg/cGg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	36	372	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	65	157	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56170991	56170991	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	175	381	0	ENST00000399503.3:c.1823del	p.Gly608AlafsTer48	p.G608Afs*48	ENST00000399503	NM_005921.1	607	Ggg/gg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287469	46287469	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	137	276	1	ENST00000334344.6:c.5333del	p.Asn1778IlefsTer13	p.N1778Ifs*13	ENST00000334344	NM_152641.2	1776	ttA/tt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545584	106545584	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142182764		P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	121	242	0	ENST00000359195.3:c.3061C>T	p.Arg1021Cys	p.R1021C	ENST00000359195	NM_002649.2	1021	Cgt/Tgt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	174	379	11	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	133	478	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518038	176518038	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111435837		P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	185	441	0	ENST00000292408.4:c.536C>T	p.Thr179Met	p.T179M	ENST00000292408	NM_213647.1	179	aCg/aTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276860	15276861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs753725730		P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	43	418	1	ENST00000263388.2:c.5404dup	p.Ala1802GlyfsTer8	p.A1802Gfs*8	ENST00000263388	NM_000435.2	1802	gct/gGct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099103	27099103	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	175	463	0	ENST00000324856.7:c.3524del	p.Pro1175HisfsTer5	p.P1175Hfs*5	ENST00000324856	NM_006015.4	1173	atC/at																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100302	157100302	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1417035592		P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	22	256	0	ENST00000346085.5:c.1243del	p.Ala415ProfsTer15	p.A415Pfs*15	ENST00000346085	NM_020732.3	413	tcG/tc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155870301	155870301	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764151643		P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	171	333	0	ENST00000368323.3:c.538C>T	p.Arg180Trp	p.R180W	ENST00000368323	NM_006912.5	180	Cgg/Tgg																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14380349	14380349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	130	326	0	ENST00000256196.4:c.68G>A	p.Gly23Asp	p.G23D	ENST00000256196		23	gGc/gAc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532501	63532501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755519590		P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	117	392	0	ENST00000307078.5:c.2078C>T	p.Thr693Met	p.T693M	ENST00000307078	NM_004655.3	693	aCg/aTg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523709	176523709	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761135791		P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	206	444	0	ENST00000292408.4:c.2120G>A	p.Arg707Gln	p.R707Q	ENST00000292408	NM_213647.1	707	cGg/cAg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63531786	63531786	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373911689		P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	160	299	0	ENST00000307078.5:c.2195C>T	p.Thr732Met	p.T732M	ENST00000307078	NM_004655.3	732	aCg/aTg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753887	42753887	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	35	482	0	ENST00000222329.4:c.377del	p.Gly126ValfsTer145	p.G126Vfs*145	ENST00000222329	NM_006494.2	126	gGt/gt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965019	25965019	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750809033		P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	142	371	1	ENST00000435504.4:c.4187C>T	p.Thr1396Met	p.T1396M	ENST00000435504		1396	aCg/aTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70343445	70343445	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs774363039		P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	144	272	0	ENST00000374080.3:c.1619G>A	p.Arg540His	p.R540H	ENST00000374080		540	cGt/cAt																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873248	136873248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368016542		P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	170	378	0	ENST00000241393.3:c.250G>A	p.Asp84Asn	p.D84N	ENST00000241393	NM_003467.2	84	Gac/Aac																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868134	45868134	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143960980		P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	122	371	1	ENST00000391945.4:c.556C>T	p.Arg186Cys	p.R186C	ENST00000391945	NM_000400.3	186	Cgc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524812	187524812	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs184690159		P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	172	360	1	ENST00000441802.2:c.10868C>T	p.Thr3623Met	p.T3623M	ENST00000441802	NM_005245.3	3623	aCg/aTg																																																																															
INHA	3623	MSKCC	GRCh37	2	220439511	220439511	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs577636996		P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	164	401	2	ENST00000243786.2:c.364C>T	p.Arg122Cys	p.R122C	ENST00000243786	NM_002191.3	122	Cgc/Tgc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416797	121416797	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1320041799		P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	137	445	0	ENST00000257555.6:c.226G>A	p.Asp76Asn	p.D76N	ENST00000257555		76	Gac/Aac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524698	187524698	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367980391		P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	166	353	0	ENST00000441802.2:c.10982G>A	p.Arg3661His	p.R3661H	ENST00000441802	NM_005245.3	3661	cGc/cAc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367975	15367975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	117	287	1	ENST00000263377.2:c.1351G>A	p.Glu451Lys	p.E451K	ENST00000263377	NM_058243.2	451	Gaa/Aaa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180040032	180040032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	138	361	0	ENST00000261937.6:c.3410C>T	p.Pro1137Leu	p.P1137L	ENST00000261937	NM_182925.4	1137	cCg/cTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778767	3778767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	167	427	0	ENST00000262367.5:c.6281C>T	p.Pro2094Leu	p.P2094L	ENST00000262367	NM_004380.2	2094	cCg/cTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41573534	41573534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	155	431	0	ENST00000263253.7:c.5819G>A	p.Arg1940His	p.R1940H	ENST00000263253	NM_001429.3	1940	cGc/cAc																																																																															
MAD2L2	10459	MSKCC	GRCh37	1	11736105	11736105	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	30	279	0	ENST00000235310.3:c.425del	p.Pro142GlnfsTer45	p.P142Qfs*45	ENST00000235310		142	cCa/ca																																																																															
PARK2	5071	MSKCC	GRCh37	6	161781121	161781122	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T	rs758718482		P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	78	333	0	ENST00000366898.1:c.1283dup	p.Asn428LysfsTer141	p.N428Kfs*141	ENST00000366898	NM_004562.2	428	aat/aaAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57480454	57480454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	155	295	0	ENST00000371085.3:c.449C>T	p.Ala150Val	p.A150V	ENST00000371085	NM_000516.4	150	gCc/gTc																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735423	204735423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	154	414	0	ENST00000302823.3:c.224G>A	p.Arg75Gln	p.R75Q	ENST00000302823	NM_005214.4	75	cGg/cAg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965245	25965245	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	161	334	0	ENST00000435504.4:c.3961A>C	p.Thr1321Pro	p.T1321P	ENST00000435504		1321	Acc/Ccc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39214657	39214657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	91	243	0	ENST00000402219.2:c.3467G>A	p.Arg1156Gln	p.R1156Q	ENST00000402219	NM_005633.3	1156	cGa/cAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224713	36224713	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	156	437	0	ENST00000222270.7:c.7102del	p.Gln2368ArgfsTer71	p.Q2368Rfs*71	ENST00000222270	NM_014727.1	2367	Ccc/cc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168770	56168771	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	144	299	0	ENST00000399503.3:c.1624_1625del	p.Thr542SerfsTer16	p.T542Sfs*16	ENST00000399503	NM_005921.1	542	ACt/t																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1952910	1952910	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	167	369	2	ENST00000382895.3:c.1997del	p.Lys666ArgfsTer67	p.K666Rfs*67	ENST00000382895	NM_133330.2	665	Aaa/aa																																																																															
AXL	558	MSKCC	GRCh37	19	41726594	41726595	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	124	344	0	ENST00000301178.4:c.142dup	p.Arg48ProfsTer43	p.R48Pfs*43	ENST00000301178	NM_021913.4	47	gcc/gCcc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21351071	21351071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs531211534		P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	157	434	0	ENST00000215739.8:c.2306C>T	p.Thr769Met	p.T769M	ENST00000215739	NM_006767.3	769	aCg/aTg																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96930923	96930923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	45	358	0	ENST00000258439.3:c.197T>C	p.Leu66Pro	p.L66P	ENST00000258439	NM_001193304.2	66	cTg/cCg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38184283	38184284	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	123	280	0	ENST00000317025.8:c.1672_1673del	p.Ser558CysfsTer5	p.S558Cfs*5	ENST00000317025	NM_023034.1	558	AGt/t																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212369	5212369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	150	436	0	ENST00000357368.4:c.4748G>A	p.Gly1583Asp	p.G1583D	ENST00000357368	NM_002850.3	1583	gGc/gAc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53247040	53247040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	136	347	1	ENST00000375401.3:c.460C>T	p.Arg154Cys	p.R154C	ENST00000375401	NM_004187.3	154	Cgc/Tgc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6042220	6042220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070878-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	40	325	0	ENST00000265849.7:c.401G>A	p.Arg134Gln	p.R134Q	ENST00000265849	NM_000535.5	134	cGa/cAa																																																																															
ATR	545	MSKCC	GRCh37	3	142176504	142176504	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1196005889		P-0070882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	20	206	0	ENST00000350721.4:c.7597C>T	p.Arg2533Ter	p.R2533*	ENST00000350721	NM_001184.3	2533	Cga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112182	115112182	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	59	296	0	ENST00000257566.3:c.1558del	p.Leu520CysfsTer112	p.L520Cfs*112	ENST00000257566	NM_016569.3	520	Ctg/tg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111475	8111479	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAC	CAGAC	-			P-0070882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	81	262	0	ENST00000346208.3:c.963_967del	p.Gln321HisfsTer29	p.Q321Hfs*29	ENST00000346208		321	CAGACc/c																																																																															
CUL3	8452	MSKCC	GRCh37	2	225338971	225338972	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0070882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	17	209	0	ENST00000264414.4:c.2297dup	p.Tyr766Ter	p.Y766*	ENST00000264414	NM_003590.4	766	tat/taAt																																																																															
TET1	80312	MSKCC	GRCh37	10	70404498	70404498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	20	224	0	ENST00000373644.4:c.2012C>T	p.Ser671Phe	p.S671F	ENST00000373644	NM_030625.2	671	tCc/tTc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86633836	86633836	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	17	176	0	ENST00000274376.6:c.945T>A	p.Asp315Glu	p.D315E	ENST00000274376	NM_002890.2	315	gaT/gaA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878548	151878548	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	61	290	0	ENST00000262189.6:c.6397C>G	p.Gln2133Glu	p.Q2133E	ENST00000262189	NM_170606.2	2133	Caa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0070883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			751	187	473	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56491645	56491645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			745	95	404	0	ENST00000267101.3:c.2537G>T	p.Ser846Ile	p.S846I	ENST00000267101	NM_001982.3	846	aGt/aTt																																																																															
EP300	2033	MSKCC	GRCh37	22	41573782	41573782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			814	74	534	0	ENST00000263253.7:c.6067C>T	p.Gln2023Ter	p.Q2023*	ENST00000263253	NM_001429.3	2023	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112162829	112162829	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0070883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	34	298	0	ENST00000257430.4:c.1433T>G	p.Leu478Ter	p.L478*	ENST00000257430	NM_000038.5	478	tTa/tGa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182160	99182160	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	65	346	0	ENST00000074304.5:c.2225T>G	p.Val742Gly	p.V742G	ENST00000074304	NM_001134224.1	742	gTg/gGg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435151	18435151	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	42	394	0	ENST00000266497.5:c.136G>T	p.Glu46Ter	p.E46*	ENST00000266497		46	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175941	112176963	+	inframe_deletion	In_Frame_Del	DEL	GAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTCATCACGTAAAGCAAAAAAGCCAGCCCAGACTGCTTCAAAATTACCTCCACCTGTGGCAAGGAAACCAAGTCAGCTGCCTGTGTACAAACTTCTACCATCACAAAACAGGTTGCAACCCCAAAAGCATGTTAGTTTTACACCGGGGGATGATATGCCACGGGTGTATTGTGTTGAAGGGACACCTATAAACTTTTCCACAGCTACATCTCTAAGTGATCTAACAATCGAATCCCCTCCAAATGAGTTAGCTGCTGGAGAAGGAGTTAGAGGAGGGGCACAGTCAGGTGAATTTGAAAAACGAGATACCATTCCTACAGAAGGCAGAAGTACAGATGAGGCTCAAGGAGGAAAAACCTCATCTGTAACCATACCTGAATTGGATGACAATAAAGCAGAGGAAGGTGATATTCTTGCAGAATGCATTAATTCTGCTATGCCCAAAGGGAAAAGTCACAAGCCTTTCCGTGTGAAAAAGATAATGGACCAGGTCCAGCAAGCATCTGCGTCTTCTTCTGCACCCAACAAAAATCAGTTAGATGGTAAGAAAAAGAAACCAACTTCACCAGTAAAACCTATACCACAAAATACTGAATATAGGACACGTGTAAGAAAAAATGCAGACTCAAAAAATAATTTAAATGCTGAGAGAGTTTTCTCAGACAACAAAGATTCAAAGAAACAGAATTTGAAAAATAATTCCAAGGTCTTCAATGATAAGCTCCCAAATAATGAAGATAGAGTCAGAGGAAGTTTTGCTTTTGATTCACCTCATCATTACACGCCTATTGAAGGAACTCCTTACTGTTTTTCACGAAATGATTCTTTGAGTTCTCTAGATTTTGATGATGATGATGTTGACCTTTCCAGGGAAAAGGCTGAATTAAGAAAGGCAAAAGAAAATAAGGAATCAGA	GAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTCATCACGTAAAGCAAAAAAGCCAGCCCAGACTGCTTCAAAATTACCTCCACCTGTGGCAAGGAAACCAAGTCAGCTGCCTGTGTACAAACTTCTACCATCACAAAACAGGTTGCAACCCCAAAAGCATGTTAGTTTTACACCGGGGGATGATATGCCACGGGTGTATTGTGTTGAAGGGACACCTATAAACTTTTCCACAGCTACATCTCTAAGTGATCTAACAATCGAATCCCCTCCAAATGAGTTAGCTGCTGGAGAAGGAGTTAGAGGAGGGGCACAGTCAGGTGAATTTGAAAAACGAGATACCATTCCTACAGAAGGCAGAAGTACAGATGAGGCTCAAGGAGGAAAAACCTCATCTGTAACCATACCTGAATTGGATGACAATAAAGCAGAGGAAGGTGATATTCTTGCAGAATGCATTAATTCTGCTATGCCCAAAGGGAAAAGTCACAAGCCTTTCCGTGTGAAAAAGATAATGGACCAGGTCCAGCAAGCATCTGCGTCTTCTTCTGCACCCAACAAAAATCAGTTAGATGGTAAGAAAAAGAAACCAACTTCACCAGTAAAACCTATACCACAAAATACTGAATATAGGACACGTGTAAGAAAAAATGCAGACTCAAAAAATAATTTAAATGCTGAGAGAGTTTTCTCAGACAACAAAGATTCAAAGAAACAGAATTTGAAAAATAATTCCAAGGTCTTCAATGATAAGCTCCCAAATAATGAAGATAGAGTCAGAGGAAGTTTTGCTTTTGATTCACCTCATCATTACACGCCTATTGAAGGAACTCCTTACTGTTTTTCACGAAATGATTCTTTGAGTTCTCTAGATTTTGATGATGATGATGTTGACCTTTCCAGGGAAAAGGCTGAATTAAGAAAGGCAAAAGAAAATAAGGAATCAGA	-			P-0070883-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	55	415	0	ENST00000257430.4:c.4651_5673del	p.Lys1551_Glu1891del	p.K1551_E1891del	ENST00000257430	NM_000038.5	1550	gaGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTCATCACGTAAAGCAAAAAAGCCAGCCCAGACTGCTTCAAAATTACCTCCACCTGTGGCAAGGAAACCAAGTCAGCTGCCTGTGTACAAACTTCTACCATCACAAAACAGGTTGCAACCCCAAAAGCATGTTAGTTTTACACCGGGGGATGATATGCCACGGGTGTATTGTGTTGAAGGGACACCTATAAACTTTTCCACAGCTACATCTCTAAGTGATCTAACAATCGAATCCCCTCCAAATGAGTTAGCTGCTGGAGAAGGAGTTAGAGGAGGGGCACAGTCAGGTGAATTTGAAAAACGAGATACCATTCCTACAGAAGGCAGAAGTACAGATGAGGCTCAAGGAGGAAAAACCTCATCTGTAACCATACCTGAATTGGATGACAATAAAGCAGAGGAAGGTGATATTCTTGCAGAATGCATTAATTCTGCTATGCCCAAAGGGAAAAGTCACAAGCCTTTCCGTGTGAAAAAGATAATGGACCAGGTCCAGCAAGCATCTGCGTCTTCTTCTGCACCCAACAAAAATCAGTTAGATGGTAAGAAAAAGAAACCAACTTCACCAGTAAAACCTATACCACAAAATACTGAATATAGGACACGTGTAAGAAAAAATGCAGACTCAAAAAATAATTTAAATGCTGAGAGAGTTTTCTCAGACAACAAAGATTCAAAGAAACAGAATTTGAAAAATAATTCCAAGGTCTTCAATGATAAGCTCCCAAATAATGAAGATAGAGTCAGAGGAAGTTTTGCTTTTGATTCACCTCATCATTACACGCCTATTGAAGGAACTCCTTACTGTTTTTCACGAAATGATTCTTTGAGTTCTCTAGATTTTGATGATGATGATGTTGACCTTTCCAGGGAAAAGGCTGAATTAAGAAAGGCAAAAGAAAATAAGGAATCAGAg/gag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097687	27097688	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	286	424	0	ENST00000324856.7:c.3281dup	p.Gln1095AlafsTer10	p.Q1095Afs*10	ENST00000324856	NM_006015.4	1092	-/A																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	34	303	0	ENST00000262741.5:c.883del	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																															
RET	5979	MSKCC	GRCh37	10	43615036	43615036	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1345166214		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	267	470	0	ENST00000355710.3:c.2450G>A	p.Arg817His	p.R817H	ENST00000355710	NM_020975.4	817	cGc/cAc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	219	361	2	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920402	114920402	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs927089403		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	216	325	0	ENST00000543371.1:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000543371	NM_001198531.1	448	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	118	352	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741757	17741757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	229	401	0	ENST00000250003.3:c.428G>A	p.Arg143Gln	p.R143Q	ENST00000250003	NM_002478.4	143	cGg/cAg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942053	71942053	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	320	512	0	ENST00000298229.2:c.1322del	p.Asn441ThrfsTer2	p.N441Tfs*2	ENST00000298229	NM_001567.3	439	ccA/cc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	284	481	4	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	116	291	0	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307348	118307348	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	28	178	3	ENST00000534358.1:c.126del	p.Pro45ArgfsTer105	p.P45Rfs*105	ENST00000534358	NM_005933.3	41	Ccc/cc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022361	12022361	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	336	491	0	ENST00000396373.4:c.467A>G	p.Asn156Ser	p.N156S	ENST00000396373	NM_001987.4	156	aAc/aGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426769	49426769	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	345	616	0	ENST00000301067.7:c.11719C>T	p.Gln3907Ter	p.Q3907*	ENST00000301067	NM_003482.3	3907	Caa/Taa																																																																															
POLE	5426	MSKCC	GRCh37	12	133257839	133257839	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs997586826		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	175	461	0	ENST00000320574.5:c.89C>T	p.Ser30Leu	p.S30L	ENST00000320574	NM_006231.2	30	tCg/tTg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28578215	28578216	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	229	361	0	ENST00000241453.7:c.2955_2956del	p.Pro986AlafsTer27	p.P986Afs*27	ENST00000241453	NM_004119.2	985	tcTCcg/tccg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914629	32914629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	153	456	0	ENST00000380152.3:c.6137C>T	p.Ser2046Leu	p.S2046L	ENST00000380152		2046	tCa/tTa																																																																															
MGA	23269	MSKCC	GRCh37	15	42052632	42052632	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779811318		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	321	391	0	ENST00000219905.7:c.7303C>T	p.Arg2435Trp	p.R2435W	ENST00000219905	NM_001164273.1	2435	Cgg/Tgg																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	270	404	6	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633218	3633218	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	308	562	0	ENST00000294008.3:c.5033del	p.Pro1678GlnfsTer37	p.P1678Qfs*37	ENST00000294008	NM_032444.2	1678	cCa/ca																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3828057	3828057	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	242	362	0	ENST00000262367.5:c.2068del	p.Ala690LeufsTer5	p.A690Lfs*5	ENST00000262367	NM_004380.2	690	Gct/ct																																																																															
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	265	443	0	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	314	566	2	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	236	439	2	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883212	37883212	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs566053951		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	260	381	1	ENST00000269571.5:c.3115G>A	p.Ala1039Thr	p.A1039T	ENST00000269571		1039	Gct/Act																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	299	537	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	286	478	0	ENST00000407977.2:c.349del	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530117	63530118	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	247	370	0	ENST00000307078.5:c.2317dup	p.Glu773GlyfsTer20	p.E773Gfs*20	ENST00000307078	NM_004655.3	773	gaa/gGaa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2207672	2207672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	55	391	0	ENST00000398665.3:c.956G>A	p.Arg319His	p.R319H	ENST00000398665	NM_032482.2	319	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229011	36229011	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	248	422	0	ENST00000222270.7:c.7795del	p.Glu2599ArgfsTer15	p.E2599Rfs*15	ENST00000222270	NM_014727.1	2597	gcG/gc																																																																															
CIC	23152	MSKCC	GRCh37	19	42796882	42796883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761345552		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			715	216	570	1	ENST00000575354.2:c.3347dup	p.Ser1117LysfsTer34	p.S1117Kfs*34	ENST00000575354	NM_015125.3	1114	gcc/gCcc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	170	467	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	126	467	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713414	40713414	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	170	455	0	ENST00000373198.4:c.4101del	p.Ser1368ProfsTer31	p.S1368Pfs*31	ENST00000373198	NM_133170.3	1367	ccC/cc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	464	397	21	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	233	407	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538941	187538941	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1341010475		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	256	424	0	ENST00000441802.2:c.8799del	p.Gly2934ValfsTer3	p.G2934Vfs*3	ENST00000441802	NM_005245.3	2933	caA/ca																																																																															
TERT	7015	MSKCC	GRCh37	5	1294664	1294665	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1060502990		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	195	375	0	ENST00000310581.5:c.336dup	p.Glu113ArgfsTer79	p.E113Rfs*79	ENST00000310581	NM_198253.2	112	-/C																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	176	306	0	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910755	29910755	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs41542015		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	149	543	0	ENST00000376809.5:c.295C>T	p.Arg99Ter	p.R99*	ENST00000376809	NM_002116.7	99	Cga/Tga																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323308	31323308	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	151	212	0	ENST00000412585.2:c.681C>A	p.Cys227Ter	p.C227*	ENST00000412585	NM_005514.6	227	tgC/tgA																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138201244	138201244	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs543704449		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	285	450	0	ENST00000237289.4:c.1943C>T	p.Ala648Val	p.A648V	ENST00000237289	NM_001270507.1	648	gCg/gTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962853	2962854	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	190	343	0	ENST00000396946.4:c.2054dup	p.Asn686GlnfsTer23	p.N686Qfs*23	ENST00000396946	NM_032415.4	685	ggc/ggGc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729771	41729771	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	269	491	0	ENST00000242208.4:c.758G>T	p.Ser253Ile	p.S253I	ENST00000242208	NM_002192.2	253	aGc/aTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	165	327	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68981360	68981360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1474820456		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	139	284	0	ENST00000288368.4:c.1432G>A	p.Val478Met	p.V478M	ENST00000288368	NM_024870.2	478	Gtg/Atg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	219	371	4	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270529	98270530	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778175153		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	145	297	0	ENST00000331920.6:c.114dup	p.Leu39AlafsTer51	p.L39Afs*51	ENST00000331920	NM_000264.3	38	-/G																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	176	284	0	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923087	39923087	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	248	389	0	ENST00000378444.4:c.3621del	p.Lys1207AsnfsTer31	p.K1207Nfs*31	ENST00000378444	NM_001123385.1	1207	aaA/aa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53243999	53243999	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	238	355	0	ENST00000375401.3:c.994C>T	p.Arg332Ter	p.R332*	ENST00000375401	NM_004187.3	332	Cga/Tga																																																																															
MED12	9968	MSKCC	GRCh37	X	70356311	70356311	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1042718707		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	274	431	0	ENST00000374080.3:c.5206G>A	p.Ala1736Thr	p.A1736T	ENST00000374080		1736	Gcc/Acc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123195665	123195665	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	160	292	0	ENST00000218089.9:c.1579T>G	p.Cys527Gly	p.C527G	ENST00000218089	NM_001042749.1	527	Tgt/Ggt																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	55	252	3	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784365	9784365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	294	461	0	ENST00000377346.4:c.2750G>A	p.Gly917Glu	p.G917E	ENST00000377346	NM_005026.3	917	gGg/gAg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118350918	118350918	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	128	316	0	ENST00000534358.1:c.3599T>A	p.Met1200Lys	p.M1200K	ENST00000534358	NM_005933.3	1200	aTg/aAg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871085	12871085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	305	452	0	ENST00000228872.4:c.312G>T	p.Gln104His	p.Q104H	ENST00000228872	NM_004064.3	104	caG/caT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434556	49434556	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	276	496	0	ENST00000301067.7:c.6997C>A	p.Pro2333Thr	p.P2333T	ENST00000301067	NM_003482.3	2333	Cct/Act																																																																															
MSI1	4440	MSKCC	GRCh37	12	120784067	120784068	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	308	534	0	ENST00000257552.2:c.917dup	p.Phe307LeufsTer72	p.F307Lfs*72	ENST00000257552	NM_002442.3	306	ggc/ggGc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67662412	67662412	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779672689		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	274	447	1	ENST00000264010.4:c.1658C>T	p.Ala553Val	p.A553V	ENST00000264010	NM_006565.3	553	gCg/gTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830160	72830160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	255	462	0	ENST00000268489.5:c.6421C>T	p.Leu2141Phe	p.L2141F	ENST00000268489	NM_006885.3	2141	Ctc/Ttc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40710563	40710563	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	240	365	0	ENST00000373198.4:c.4288A>C	p.Lys1430Gln	p.K1430Q	ENST00000373198	NM_133170.3	1430	Aaa/Caa																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445882	29445882	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	239	415	0	ENST00000544604.2:c.1713C>A	p.Cys571Ter	p.C571*	ENST00000544604	NM_001206998.1	571	tgC/tgA																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63965731	63965731	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1229074476		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			705	38	454	0	ENST00000295900.6:c.640G>A	p.Ala214Thr	p.A214T	ENST00000295900	NM_000333.3	214	Gca/Aca																																																																															
ATR	545	MSKCC	GRCh37	3	142188315	142188315	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	148	347	0	ENST00000350721.4:c.6416del	p.Leu2139Ter	p.L2139*	ENST00000350721	NM_001184.3	2139	tTg/tg																																																																															
BCL6	604	MSKCC	GRCh37	3	187446146	187446146	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	253	464	0	ENST00000232014.4:c.1540+2T>C		p.X514_splice	ENST00000232014	NM_001130845.1	514																																																																																
WHSC1	7468	MSKCC	GRCh37	4	1902857	1902857	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	72	441	0	ENST00000382895.3:c.480del	p.Lys160AsnfsTer14	p.K160Nfs*14	ENST00000382895	NM_133330.2	159	cAa/ca																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127383	55127383	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	39	464	1	ENST00000257290.5:c.171G>A	p.Trp57Ter	p.W57*	ENST00000257290	NM_006206.4	57	tgG/tgA																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001239	150001239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	146	468	0	ENST00000253339.5:c.2365G>A	p.Asp789Asn	p.D789N	ENST00000253339		789	Gat/Aat																																																																															
PARK2	5071	MSKCC	GRCh37	6	162394367	162394367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144032774		P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	220	373	0	ENST00000366898.1:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000366898	NM_004562.2	234	cGg/cAg																																																																															
HGF	3082	MSKCC	GRCh37	7	81346669	81346669	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	192	337	0	ENST00000222390.5:c.1284G>C	p.Trp428Cys	p.W428C	ENST00000222390	NM_000601.4	428	tgG/tgC																																																																															
SMO	6608	MSKCC	GRCh37	7	128829159	128829159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	53	328	0	ENST00000249373.3:c.167G>A	p.Gly56Asp	p.G56D	ENST00000249373	NM_005631.4	56	gGc/gAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151849871	151849871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	234	374	0	ENST00000262189.6:c.12445C>T	p.Pro4149Ser	p.P4149S	ENST00000262189	NM_170606.2	4149	Cca/Tca																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090877	5090877	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	164	304	0	ENST00000381652.3:c.3025A>G	p.Lys1009Glu	p.K1009E	ENST00000381652	NM_004972.3	1009	Aaa/Gaa																																																																															
ABL1	25	MSKCC	GRCh37	9	133760010	133760010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	258	381	0	ENST00000318560.5:c.2333G>A	p.Gly778Asp	p.G778D	ENST00000318560	NM_005157.4	778	gGc/gAc																																																																															
XIAP	331	MSKCC	GRCh37	X	123019556	123019556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	184	304	0	ENST00000355640.3:c.44C>T	p.Ala15Val	p.A15V	ENST00000355640		15	gCa/gTa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659852	227659852	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070887-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	63	217	0	ENST00000305123.5:c.3603del	p.Pro1203HisfsTer24	p.P1203Hfs*24	ENST00000305123	NM_005544.2	1201	ccT/cc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0070905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	224	380	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578464	7578476	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGCCGGGCGG	GGGTGCCGGGCGG	-	rs876659215		P-0070905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	98	478	0	ENST00000269305.4:c.454_466del	p.Pro152AlafsTer14	p.P152Afs*14	ENST00000269305	NM_001126112.2	152	CCGCCCGGCACCCgc/gc																																																																															
AR	367	MSKCC	GRCh37	X	66941679	66941679	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137852562		P-0070905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	53	149	0	ENST00000374690.3:c.2323C>T	p.Arg775Cys	p.R775C	ENST00000374690	NM_000044.3	775	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175173	112175173	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	410	379	0	ENST00000257430.4:c.3883del	p.Glu1295LysfsTer10	p.E1295Kfs*10	ENST00000257430	NM_000038.5	1294	caG/ca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260260	16260260	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761667751		P-0070905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	173	503	0	ENST00000375759.3:c.7525C>T	p.Arg2509Trp	p.R2509W	ENST00000375759	NM_015001.2	2509	Cgg/Tgg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527850	157527850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	202	405	0	ENST00000346085.5:c.5575C>T	p.Gln1859Ter	p.Q1859*	ENST00000346085	NM_020732.3	1859	Caa/Taa																																																																															
TET2	54790	MSKCC	GRCh37	4	106158109	106158109	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	194	467	0	ENST00000380013.4:c.3010A>G	p.Lys1004Glu	p.K1004E	ENST00000380013	NM_001127208.2	1004	Aaa/Gaa																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794865	242794865	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777693230		P-0070905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	165	377	0	ENST00000334409.5:c.344G>A	p.Arg115His	p.R115H	ENST00000334409	NM_005018.2	115	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0070906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	43	230	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0070906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	51	172	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482425	56482425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	115	568	0	ENST00000267101.3:c.973G>A	p.Gly325Arg	p.G325R	ENST00000267101	NM_001982.3	325	Gga/Aga																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205679	128205679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	78	516	1	ENST00000341105.2:c.196G>A	p.Ala66Thr	p.A66T	ENST00000341105	NM_032638.4	66	Gcg/Acg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325861	65325861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	114	543	0	ENST00000342505.4:c.1261C>T	p.His421Tyr	p.H421Y	ENST00000342505	NM_002227.2	421	Cat/Tat																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417607	139417607	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	73	511	0	ENST00000277541.6:c.437C>G	p.Ser146Cys	p.S146C	ENST00000277541	NM_017617.3	146	tCc/tGc																																																																															
CASP8	841	MSKCC	GRCh37	2	202131468	202131468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	96	491	0	ENST00000358485.4:c.436G>A	p.Glu146Lys	p.E146K	ENST00000358485	NM_001080125.1	146	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68857479	68857488	+	frameshift_variant	Frame_Shift_Del	DEL	TGCAAATTCC	TGCAAATTCC	-			P-0070906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	86	432	0	ENST00000261769.5:c.2117_2126del	p.Gln706ProfsTer13	p.Q706Pfs*13	ENST00000261769	NM_004360.3	705	tTGCAAATTCCt/tt																																																																															
FYN	2534	MSKCC	GRCh37	6	112020863	112020863	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	111	392	0	ENST00000368678.4:c.708T>G	p.Asp236Glu	p.D236E	ENST00000368678		236	gaT/gaG																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098956	178098956	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	84	322	0	ENST00000397062.3:c.89T>G	p.Leu30Arg	p.L30R	ENST00000397062	NM_006164.4	30	cTt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0070944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	236	429	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
CDH1	999	MSKCC	GRCh37	16	68853188	68853188	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	249	429	0	ENST00000261769.5:c.1572del	p.Ile525PhefsTer32	p.I525Ffs*32	ENST00000261769	NM_004360.3	524	cGg/cg																																																																															
USP8	9101	MSKCC	GRCh37	15	50782713	50782713	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760375643		P-0070945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	36	383	0	ENST00000307179.4:c.2225G>A	p.Arg742Gln	p.R742Q	ENST00000307179		742	cGg/cAg																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2491342	2491342	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753742293		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	106	519	0	ENST00000355716.4:c.385G>A	p.Val129Ile	p.V129I	ENST00000355716	NM_003820.2	129	Gtc/Atc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057666	27057666	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	103	417	0	ENST00000324856.7:c.1377del	p.Ser460AlafsTer159	p.S460Afs*159	ENST00000324856	NM_006015.4	458	ggC/gg																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	58	323	1	ENST00000262741.5:c.883del	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	98	391	0	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699294	117699294	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767710032		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	52	427	0	ENST00000369458.3:c.347G>A	p.Arg116Gln	p.R116Q	ENST00000369458	NM_024626.3	116	cGg/cAg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736329	243736329	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	78	385	0	ENST00000263826.5:c.718G>T	p.Glu240Ter	p.E240*	ENST00000263826	NM_005465.4	240	Gag/Tag																																																																															
TET1	80312	MSKCC	GRCh37	10	70450805	70450805	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759636615		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	100	487	1	ENST00000373644.4:c.5645C>T	p.Thr1882Met	p.T1882M	ENST00000373644	NM_030625.2	1882	aCg/aTg																																																																															
WT1	7490	MSKCC	GRCh37	11	32456560	32456560	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886048229		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	44	299	0	ENST00000332351.3:c.332C>T	p.Pro111Leu	p.P111L	ENST00000332351	NM_024426.4	111	cCg/cTg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	49	266	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	33	354	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480009	50480010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1302818922		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	84	442	1	ENST00000394963.4:c.249dup	p.Asn84GlufsTer47	p.N84Efs*47	ENST00000394963	NM_003076.4	81	-/G																																																																															
POLE	5426	MSKCC	GRCh37	12	133245024	133245024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs752846614		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	96	496	1	ENST00000320574.5:c.2091del	p.Leu698CysfsTer94	p.L698Cfs*94	ENST00000320574	NM_006231.2	697	ccC/cc																																																																															
RB1	5925	MSKCC	GRCh37	13	48881489	48881490	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	51	316	0	ENST00000267163.4:c.219_220del	p.Arg73SerfsTer36	p.R73Sfs*36	ENST00000267163	NM_000321.2	71	AGa/a																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060955	38060955	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	143	462	1	ENST00000250448.2:c.1034del	p.Gly345AlafsTer5	p.G345Afs*5	ENST00000250448	NM_004496.3	345	gGc/gc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631935	90631935	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267606870		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	91	467	0	ENST00000330062.3:c.418C>T	p.Arg140Trp	p.R140W	ENST00000330062	NM_002168.2	140	Cgg/Tgg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781901	3781903	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-	rs751071525		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	74	457	1	ENST00000262367.5:c.4764_4766del	p.Lys1588del	p.K1588del	ENST00000262367	NM_004380.2	1588	aaGAAc/aac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789591	3789591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	88	403	0	ENST00000262367.5:c.4268del	p.Pro1423LeufsTer36	p.P1423Lfs*36	ENST00000262367	NM_004380.2	1423	cCt/ct																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857766	9857766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	91	521	1	ENST00000330684.3:c.3635C>T	p.Thr1212Met	p.T1212M	ENST00000330684	NM_001134407.1	1212	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	94	478	0	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827367	72827367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368568803		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	80	400	0	ENST00000268489.5:c.9214G>A	p.Val3072Ile	p.V3072I	ENST00000268489	NM_006885.3	3072	Gta/Ata																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991949	72991949	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs757302188		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	64	433	0	ENST00000268489.5:c.2096del	p.Gly699AlafsTer125	p.G699Afs*125	ENST00000268489	NM_006885.3	699	gGc/gc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993776	72993776	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200056605		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	94	551	0	ENST00000268489.5:c.269G>A	p.Ser90Asn	p.S90N	ENST00000268489	NM_006885.3	90	aGc/aAc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89880997	89880997	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	71	299	0	ENST00000389301.3:c.214T>A	p.Leu72Met	p.L72M	ENST00000389301	NM_000135.2	72	Ttg/Atg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16024505	16024505	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	90	443	0	ENST00000268712.3:c.1713del	p.Arg572GlufsTer18	p.R572Efs*18	ENST00000268712	NM_006311.3	571	ggG/gg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	107	470	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
RARA	5914	MSKCC	GRCh37	17	38508709	38508709	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	101	380	0	ENST00000254066.5:c.757A>G	p.Thr253Ala	p.T253A	ENST00000254066	NM_000964.3	253	Acc/Gcc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453398	40453399	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs773909918		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	43	493	1	ENST00000345506.4:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000345506	NM_003152.3	365	-/C																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	236	581	9	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	110	503	1	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45423125	45423125	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	31	386	0	ENST00000262160.6:c.3G>A	p.Met1?	p.M1?	ENST00000262160	NM_005901.5	1	atG/atA																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602748	10602748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	111	544	0	ENST00000171111.5:c.830C>T	p.Thr277Met	p.T277M	ENST00000171111	NM_203500.1	277	aCg/aTg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11022936	11022936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	74	403	0	ENST00000327064.4:c.635C>T	p.Ala212Val	p.A212V	ENST00000327064	NM_199141.1	212	gCg/gTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350626	15350626	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1234699192		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	78	435	0	ENST00000263377.2:c.3289C>T	p.Arg1097Cys	p.R1097C	ENST00000263377	NM_058243.2	1097	Cgt/Tgt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943480	17943480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	93	522	0	ENST00000458235.1:c.2528C>A	p.Pro843Gln	p.P843Q	ENST00000458235	NM_000215.3	843	cCg/cAg																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792438	33792438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	90	351	0	ENST00000498907.2:c.883G>A	p.Ala295Thr	p.A295T	ENST00000498907	NM_004364.3	295	Gcg/Acg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211882	36211882	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519279		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	96	456	0	ENST00000222270.7:c.1633C>T	p.Arg545Ter	p.R545*	ENST00000222270	NM_014727.1	545	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222937	36222938	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1161258635		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	107	560	0	ENST00000222270.7:c.5572dup	p.Arg1858ProfsTer114	p.R1858Pfs*114	ENST00000222270	NM_014727.1	1856	gcc/gCcc																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	111	520	0	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45856054	45856054	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs922327414		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	63	459	0	ENST00000391945.4:c.1852G>A	p.Val618Ile	p.V618I	ENST00000391945	NM_000400.3	618	Gtc/Atc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867304	45867304	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1372639983		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	81	518	0	ENST00000391945.4:c.889G>A	p.Ala297Thr	p.A297T	ENST00000391945	NM_000400.3	297	Gcc/Acc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	74	510	3	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
ERCC3	2071	MSKCC	GRCh37	2	128028956	128028956	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775316471		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	75	376	0	ENST00000285398.2:c.1901G>A	p.Arg634His	p.R634H	ENST00000285398	NM_000122.1	634	cGt/cAt																																																																															
BARD1	580	MSKCC	GRCh37	2	215657077	215657077	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145629242		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	51	342	0	ENST00000260947.4:c.308G>A	p.Ser103Asn	p.S103N	ENST00000260947	NM_000465.2	103	aGc/aAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	90	513	5	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	73	401	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175857	24175859	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	81	421	0	ENST00000263121.7:c.1091_1093del	p.Lys364del	p.K364del	ENST00000263121	NM_003073.3	362	gAGAag/gag																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130434	29130434	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1060502711		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	76	503	0	ENST00000328354.6:c.276del	p.Trp93GlyfsTer17	p.W93Gfs*17	ENST00000328354	NM_007194.3	92	ccC/cc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52588798	52588798	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	64	432	1	ENST00000394830.3:c.4230del	p.Pro1411LeufsTer21	p.P1411Lfs*21	ENST00000394830	NM_018313.4	1410	ggG/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	53	263	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178943755	178943755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200671228		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	42	251	0	ENST00000263967.3:c.2422C>T	p.Arg808Trp	p.R808W	ENST00000263967	NM_006218.2	808	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178948101	178948101	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	61	348	0	ENST00000263967.3:c.2873A>G	p.Gln958Arg	p.Q958R	ENST00000263967	NM_006218.2	958	cAg/cGg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430380	181430380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	88	407	0	ENST00000325404.1:c.232G>A	p.Glu78Lys	p.E78K	ENST00000325404	NM_003106.3	78	Gag/Aag																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143130120	143130120	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	22	254	0	ENST00000262992.4:c.896del	p.Asn299MetfsTer10	p.N299Mfs*10	ENST00000262992	NM_001101669.1	299	aAt/at																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	66	393	0	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	166	270	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564680	86564680	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	105	500	0	ENST00000274376.6:c.416del	p.Pro139LeufsTer35	p.P139Lfs*35	ENST00000274376	NM_002890.2	138	Ccc/cc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519731	176519731	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1348650129		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	90	511	1	ENST00000292408.4:c.1003G>A	p.Ala335Thr	p.A335T	ENST00000292408	NM_213647.1	335	Gca/Aca																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057054	180057054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	64	474	0	ENST00000261937.6:c.565C>T	p.Arg189Trp	p.R189W	ENST00000261937	NM_182925.4	189	Cgg/Tgg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609778	117609778	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	68	414	0	ENST00000368508.3:c.6921G>T	p.Lys2307Asn	p.K2307N	ENST00000368508	NM_002944.2	2307	aaG/aaT																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004216	150004216	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs758039363		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	68	298	0	ENST00000253339.5:c.2009G>A	p.Arg670Gln	p.R670Q	ENST00000253339		670	cGg/cAg																																																																															
SMO	6608	MSKCC	GRCh37	7	128851591	128851591	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	66	373	0	ENST00000249373.3:c.1916T>C	p.Val639Ala	p.V639A	ENST00000249373	NM_005631.4	639	gTc/gCc																																																																															
BRAF	673	MSKCC	GRCh37	7	140482926	140482927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs777474487		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	76	413	0	ENST00000288602.6:c.1208dup	p.Ala404CysfsTer9	p.A404Cfs*9	ENST00000288602	NM_004333.4	403	cct/ccCt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	89	481	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874808	151874808	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753190878		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	93	444	0	ENST00000262189.6:c.7730C>T	p.Pro2577Leu	p.P2577L	ENST00000262189	NM_170606.2	2577	cCa/cTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891591	151891591	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	51	352	0	ENST00000262189.6:c.4441C>T	p.Arg1481Ter	p.R1481*	ENST00000262189	NM_170606.2	1481	Cga/Tga																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	56	442	0	ENST00000220592.5:c.1805_1806dup	p.Ala603ProfsTer93	p.A603Pfs*93	ENST00000220592	NM_012154.3	602	-/CC																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738238	145738238	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375049839		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	110	544	1	ENST00000428558.2:c.2747C>T	p.Pro916Leu	p.P916L	ENST00000428558	NM_004260.3	916	cCg/cTg																																																																															
TEK	7010	MSKCC	GRCh37	9	27185545	27185545	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	115	401	0	ENST00000380036.4:c.1250del	p.Pro417LeufsTer10	p.P417Lfs*10	ENST00000380036	NM_000459.3	415	ctC/ct																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139418204	139418204	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs187473846		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	84	443	0	ENST00000277541.6:c.368C>T	p.Thr123Met	p.T123M	ENST00000277541	NM_017617.3	123	aCg/aTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39914709	39914710	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	104	376	0	ENST00000378444.4:c.4652_4653del	p.Ser1551LeufsTer4	p.S1551Lfs*4	ENST00000378444	NM_001123385.1	1551	tCT/t																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932085	39932085	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	107	500	0	ENST00000378444.4:c.2514del	p.Lys839SerfsTer17	p.K839Sfs*17	ENST00000378444	NM_001123385.1	838	ccC/cc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934192	39934192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	110	437	2	ENST00000378444.4:c.407C>T	p.Ala136Val	p.A136V	ENST00000378444	NM_001123385.1	136	gCc/gTc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48649679	48649679	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150572851		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	75	498	0	ENST00000376670.3:c.163G>A	p.Ala55Thr	p.A55T	ENST00000376670	NM_002049.3	55	Gct/Act																																																																															
MTOR	2475	MSKCC	GRCh37	1	11298644	11298644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	85	424	2	ENST00000361445.4:c.1817G>A	p.Cys606Tyr	p.C606Y	ENST00000361445	NM_004958.3	606	tGt/tAt																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612809	228612809	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773691912		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	117	639	0	ENST00000366696.1:c.218G>A	p.Arg73His	p.R73H	ENST00000366696	NM_003493.2	73	cGc/cAc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649902	88649902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	45	208	0	ENST00000372037.3:c.151G>A	p.Ala51Thr	p.A51T	ENST00000372037	NM_004329.2	51	Gca/Aca																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912174	114912174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	80	344	0	ENST00000543371.1:c.1244C>T	p.Pro415Leu	p.P415L	ENST00000543371	NM_001198531.1	415	cCc/cTc																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47599403	47599404	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	98	449	0	ENST00000395288.2:c.148dup	p.Ser50PhefsTer52	p.S50Ffs*52	ENST00000395288	NM_016506.5	50	tcg/tTcg																																																																															
ATM	472	MSKCC	GRCh37	11	108218041	108218041	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	31	302	0	ENST00000278616.4:c.8620C>T	p.Gln2874Ter	p.Q2874*	ENST00000278616	NM_000051.3	2874	Cag/Tag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427308	427308	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1168823878		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	90	399	0	ENST00000399788.2:c.2861G>A	p.Arg954Gln	p.R954Q	ENST00000399788	NM_001042603.1	954	cGa/cAa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18499736	18499736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	116	509	0	ENST00000266497.5:c.1591G>A	p.Ala531Thr	p.A531T	ENST00000266497		531	Gca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426214	49426214	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1322333889		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	102	507	0	ENST00000301067.7:c.12274C>T	p.Gln4092Ter	p.Q4092*	ENST00000301067	NM_003482.3	4092	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444959	49444960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	57	531	0	ENST00000301067.7:c.2506dup	p.Gln836ProfsTer3	p.Q836Pfs*3	ENST00000301067	NM_003482.3	836	cag/cCag																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50490655	50490655	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	78	365	0	ENST00000394963.4:c.1292T>A	p.Ile431Asn	p.I431N	ENST00000394963	NM_003076.4	431	aTc/aAc																																																																															
USP8	9101	MSKCC	GRCh37	15	50769068	50769068	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766331208		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	60	303	0	ENST00000307179.4:c.872G>A	p.Arg291His	p.R291H	ENST00000307179		291	cGc/cAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	339531	339531	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs980697628		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	69	349	0	ENST00000262320.3:c.2371G>A	p.Gly791Arg	p.G791R	ENST00000262320	NM_003502.3	791	Ggg/Agg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632368	3632368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	83	427	0	ENST00000294008.3:c.5480G>A	p.Gly1827Asp	p.G1827D	ENST00000294008	NM_032444.2	1827	gGc/gAc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639181	3639181	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	74	534	0	ENST00000294008.3:c.4458G>C	p.Arg1486Ser	p.R1486S	ENST00000294008	NM_032444.2	1486	agG/agC																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807317	3807317	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777767339		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	66	325	1	ENST00000262367.5:c.3670G>A	p.Asp1224Asn	p.D1224N	ENST00000262367	NM_004380.2	1224	Gat/Aat																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351024	89351026	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	80	418	0	ENST00000301030.4:c.1924_1926del	p.Glu642del	p.E642del	ENST00000301030	NM_001256183.1	642	GAG/-																																																																															
RARA	5914	MSKCC	GRCh37	17	38511674	38511674	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	99	443	0	ENST00000254066.5:c.1171+1G>A		p.X391_splice	ENST00000254066	NM_000964.3	391																																																																																
RNF43	54894	MSKCC	GRCh37	17	56438159	56438161	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs1174509032		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	104	445	1	ENST00000407977.2:c.832_834del	p.Glu278del	p.E278del	ENST00000407977		278	GAG/-																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554549	63554549	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	125	538	2	ENST00000307078.5:c.190del	p.Glu64SerfsTer12	p.E64Sfs*12	ENST00000307078	NM_004655.3	64	Gag/ag																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61328302	61328302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	56	382	0	ENST00000283752.5:c.149C>T	p.Ala50Val	p.A50V	ENST00000283752	NM_006919.2	50	gCa/gTa																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18272185	18272185	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	88	467	0	ENST00000222254.8:c.695T>G	p.Val232Gly	p.V232G	ENST00000222254	NM_005027.3	232	gTg/gGg																																																																															
BBC3	27113	MSKCC	GRCh37	19	47729979	47729979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	104	418	0	ENST00000449228.1:c.410C>T	p.Ala137Val	p.A137V	ENST00000449228	NM_001127240.2	137	gCa/gTa																																																																															
REL	5966	MSKCC	GRCh37	2	61149207	61149207	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	93	491	0	ENST00000295025.8:c.1397C>G	p.Ala466Gly	p.A466G	ENST00000295025	NM_002908.2	466	gCc/gGc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212587136	212587136	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	54	294	0	ENST00000342788.4:c.865T>C	p.Cys289Arg	p.C289R	ENST00000342788	NM_005235.2	289	Tgt/Cgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41420085	41420085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	68	382	0	ENST00000373198.4:c.236G>A	p.Ser79Asn	p.S79N	ENST00000373198	NM_133170.3	79	aGc/aAc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21344766	21344766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	92	400	0	ENST00000215739.8:c.743G>A	p.Gly248Glu	p.G248E	ENST00000215739	NM_006767.3	248	gGa/gAa																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279852	29279853	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	39	114	0	ENST00000544604.2:c.98_99insT	p.Pro34AlafsTer75	p.P34Afs*75	ENST00000544604	NM_001206998.1	33	ccg/ccTg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29440867	29440867	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1188411932		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	65	374	0	ENST00000544604.2:c.733C>T	p.Arg245Ter	p.R245*	ENST00000544604	NM_001206998.1	245	Cga/Tga																																																																															
MLH1	4292	MSKCC	GRCh37	3	37038108	37038108	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs267607712		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	63	296	0	ENST00000231790.2:c.117-2A>G		p.X39_splice	ENST00000231790	NM_000249.3	39																																																																																
MLH1	4292	MSKCC	GRCh37	3	37045891	37045891	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C	rs267607736		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	67	375	0	ENST00000231790.2:c.307-1G>C		p.X103_splice	ENST00000231790	NM_000249.3	103																																																																																
MYD88	4615	MSKCC	GRCh37	3	38180325	38180325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	119	509	1	ENST00000396334.3:c.173C>T	p.Ala58Val	p.A58V	ENST00000396334	NM_002468.4	58	gCc/gTc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138433531	138433531	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	35	360	0	ENST00000289153.2:c.1081A>G	p.Thr361Ala	p.T361A	ENST00000289153	NM_006219.2	361	Act/Gct																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532930	187532930	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	150	275	0	ENST00000441802.2:c.9464-1G>T		p.X3155_splice	ENST00000441802	NM_005245.3	3155																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31508805	31508805	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1337600691		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	66	347	0	ENST00000344624.3:c.1510G>A	p.Val504Ile	p.V504I	ENST00000344624		504	Gtt/Att																																																																															
RAD50	10111	MSKCC	GRCh37	5	131923705	131923705	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	60	331	0	ENST00000265335.6:c.975T>A	p.Cys325Ter	p.C325*	ENST00000265335		325	tgT/tgA																																																																															
NSD1	64324	MSKCC	GRCh37	5	176719116	176719116	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	117	371	0	ENST00000439151.2:c.6420A>T	p.Lys2140Asn	p.K2140N	ENST00000439151	NM_022455.4	2140	aaA/aaT																																																																															
E2F3	1871	MSKCC	GRCh37	6	20483001	20483001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	78	383	0	ENST00000346618.3:c.734G>A	p.Ser245Asn	p.S245N	ENST00000346618	NM_001949.4	245	aGt/aAt																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225648	26225648	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770438126		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	137	630	1	ENST00000360408.1:c.266C>T	p.Ala89Val	p.A89V	ENST00000360408	NM_003532.2	89	gCg/gTg																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858182	27858182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	105	475	0	ENST00000359303.2:c.389G>A	p.Arg130His	p.R130H	ENST00000359303	NM_003535.2	130	cGt/cAt																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797284	32797284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	72	436	0	ENST00000374899.4:c.1825G>A	p.Ala609Thr	p.A609T	ENST00000374899	NM_018833.2	609	Gcg/Acg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066747	94066747	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	67	390	0	ENST00000369303.4:c.1012C>A	p.Leu338Ile	p.L338I	ENST00000369303	NM_004440.3	338	Ctc/Atc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026789	6026789	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			42	27	80	0	ENST00000265849.7:c.1607A>G	p.Gln536Arg	p.Q536R	ENST00000265849	NM_000535.5	536	cAg/cGg																																																																															
POT1	25913	MSKCC	GRCh37	7	124532409	124532410	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			69	13	256	0	ENST00000357628.3:c.33_34dup	p.Thr12IlefsTer4	p.T12Ifs*4	ENST00000357628	NM_015450.2	12	aca/aTAca																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271748	38271748	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1366165565		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	112	540	0	ENST00000425967.3:c.2201G>C	p.Gly734Ala	p.G734A	ENST00000425967	NM_001174067.1	734	gGt/gCt																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2056709	2056709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1402196351		P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	81	383	2	ENST00000349721.2:c.1211C>T	p.Thr404Met	p.T404M	ENST00000349721	NM_003070.3	404	aCg/aTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139418186	139418186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	80	440	0	ENST00000277541.6:c.386G>A	p.Cys129Tyr	p.C129Y	ENST00000277541	NM_017617.3	129	tGc/tAc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226976	53226976	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	61	344	0	ENST00000375401.3:c.2599A>G	p.Met867Val	p.M867V	ENST00000375401	NM_004187.3	867	Atg/Gtg																																																																															
MED12	9968	MSKCC	GRCh37	X	70341503	70341503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	106	397	0	ENST00000374080.3:c.938G>A	p.Ser313Asn	p.S313N	ENST00000374080		313	aGc/aAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0070809-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	42	342	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070809-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	55	509	0	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390779	139390779	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771318379		P-0070809-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	97	722	0	ENST00000277541.6:c.7412C>T	p.Ser2471Leu	p.S2471L	ENST00000277541	NM_017617.3	2471	tCg/tTg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198288621	198288621	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1051372734		P-0070809-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	61	437	0	ENST00000335508.6:c.106A>G	p.Thr36Ala	p.T36A	ENST00000335508	NM_012433.2	36	Aca/Gca																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	152	396	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
AKT1	207	MSKCC	GRCh37	14	105239419	105239419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			795	174	524	0	ENST00000349310.3:c.968A>G	p.Asp323Gly	p.D323G	ENST00000349310	NM_001014432.1	323	gAc/gGc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164690	36164691	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	154	454	0	ENST00000300305.3:c.1184dup	p.Phe396ValfsTer204	p.F396Vfs*204	ENST00000300305		395	ccg/ccCg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0047252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	108	347	0	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151845366	151845366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	129	446	0	ENST00000262189.6:c.13646G>A	p.Arg4549His	p.R4549H	ENST00000262189	NM_170606.2	4549	cGc/cAc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206779	36206780	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCA			P-0047252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			819	185	513	0	ENST00000300305.3:c.732_733insTGGG	p.Pro245TrpfsTer17	p.P245Wfs*17	ENST00000300305		244	-/TGGG																																																																															
TEK	7010	MSKCC	GRCh37	9	27158117	27158117	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	132	442	0	ENST00000380036.4:c.341G>T	p.Arg114Leu	p.R114L	ENST00000380036	NM_000459.3	114	cGa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0066663-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			484	77	483	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
STK11	6794	MSKCC	GRCh37	19	1218500	1218500	+	splice_donor_variant	Splice_Site	SNP	A	A	G	rs1131690951		P-0066663-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			328	59	357	0	ENST00000326873.7:c.374+1A>G		p.X125_splice	ENST00000326873	NM_000455.4	125																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48593465	48593465	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs794726995		P-0066663-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			534	71	411	0	ENST00000342988.3:c.1216G>A	p.Ala406Thr	p.A406T	ENST00000342988	NM_005359.5	406	Gcg/Acg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0066663-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	34	325	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0070126-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			953	13	0	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29546125	29546125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070126-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			701	8	0	0	ENST00000358273.4:c.1630G>A	p.Glu544Lys	p.E544K	ENST00000358273	NM_001042492.2	544	Gaa/Aaa																																																																															
STK11	6794	MSKCC	GRCh37	19	1221321	1221322	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0070129-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			316	43	392	0	ENST00000326873.7:c.848_849del	p.Ser283Ter	p.S283*	ENST00000326873	NM_000455.4	282	CTc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0070129-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			373	86	491	0	ENST00000269305.4:c.560-2A>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0070129-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			314	79	212	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528696	8528696	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070129-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			478	67	334	0	ENST00000356435.5:c.436C>G	p.Leu146Val	p.L146V	ENST00000356435		146	Ctt/Gtt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680708	30680708	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs143800710		P-0070129-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			419	39	403	0	ENST00000376406.3:c.1011G>T	p.Arg337Ser	p.R337S	ENST00000376406	NM_014641.2	337	agG/agT																																																																															
CYLD	1540	MSKCC	GRCh37	16	50828122	50828122	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0070129-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			261	52	230	0	ENST00000398568.2:c.2461-1G>T		p.X821_splice	ENST00000398568	NM_001042412.1	821																																																																																
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0070565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	98	404	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150919401	150919401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1377752861		P-0070830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			884	175	403	0	ENST00000271640.5:c.1180C>T	p.Arg394Trp	p.R394W	ENST00000271640	NM_001145415.1	394	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0070830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	359	373	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs876659675		P-0070830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	290	385	0	ENST00000269305.4:c.764T>G	p.Ile255Ser	p.I255S	ENST00000269305	NM_001126112.2	255	aTc/aGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0070830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	141	414	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42041078	42041078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			753	145	549	0	ENST00000219905.7:c.5456G>T	p.Gly1819Val	p.G1819V	ENST00000219905	NM_001164273.1	1819	gGc/gTc																																																																															
PGR	5241	MSKCC	GRCh37	11	100922217	100922217	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070119-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			193	92	400	0	ENST00000325455.5:c.2295G>C	p.Trp765Cys	p.W765C	ENST00000325455	NM_001202474.3	765	tgG/tgC																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109879	115109879	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1268167495		P-0070119-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	95	650	0	ENST00000257566.3:c.1999G>A	p.Ala667Thr	p.A667T	ENST00000257566	NM_016569.3	667	Gcg/Acg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0070119-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			161	270	590	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61306888	61306888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070119-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			114	206	450	0	ENST00000341074.5:c.592G>A	p.Glu198Lys	p.E198K	ENST00000341074	NM_002974.2	198	Gaa/Aaa																																																																															
STK11	6794	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1177782647		P-0070119-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			218	247	703	4	ENST00000326873.7:c.842dup	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggCc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37666012	37666012	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0070119-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			296	48	364	0	ENST00000447079.4:c.2664G>C	p.Glu888Asp	p.E888D	ENST00000447079	NM_015083.1	888	gaG/gaC																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966225	25966225	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070119-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			294	192	578	0	ENST00000435504.4:c.2981T>C	p.Ile994Thr	p.I994T	ENST00000435504		994	aTa/aCa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129153	152129153	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070119-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			138	260	607	0	ENST00000206249.3:c.106G>T	p.Glu36Ter	p.E36*	ENST00000206249	NM_000125.3	36	Gag/Tag																																																																															
JAK2	3717	MSKCC	GRCh37	9	5081806	5081806	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070119-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	83	480	0	ENST00000381652.3:c.2516G>T	p.Arg839Leu	p.R839L	ENST00000381652	NM_004972.3	839	cGg/cTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880997	37880998	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TGT	rs397516979		P-0070557-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			744	26	563	0	ENST00000269571.5:c.2326_2327insTGT	p.Gly776delinsValCys	p.G776delinsVC	ENST00000269571		776	ggt/gTGTgt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139842	55139842	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	448	447	0	ENST00000257290.5:c.1503C>A	p.Cys501Ter	p.C501*	ENST00000257290	NM_006206.4	501	tgC/tgA																																																																															
ATM	472	MSKCC	GRCh37	11	108159797	108159797	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			49	109	88	0	ENST00000278616.4:c.4207del	p.Ser1403AlafsTer3	p.S1403Afs*3	ENST00000278616	NM_000051.3	1401	ttA/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	190	293	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027100	48027303	+	inframe_deletion	In_Frame_Del	DEL	AAAGGTATGACTTCAGAGTCTGATTCCATTGGGTTGACACCAGGAGAGAAAAGTGAATTGGCCCTCTCTGCTCTAGGTGGTTGTGTCTTCTACCTCAAAAAATGCCTTATTGATCAGGAGCTTTTATCAATGGCTAATTTTGAAGAATATATTCCCTTGGATTCTGACACAGTCAGCACTACAAGATCTGGTGCTATCTTCACC	AAAGGTATGACTTCAGAGTCTGATTCCATTGGGTTGACACCAGGAGAGAAAAGTGAATTGGCCCTCTCTGCTCTAGGTGGTTGTGTCTTCTACCTCAAAAAATGCCTTATTGATCAGGAGCTTTTATCAATGGCTAATTTTGAAGAATATATTCCCTTGGATTCTGACACAGTCAGCACTACAAGATCTGGTGCTATCTTCACC	-			P-0070733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			871	140	508	0	ENST00000234420.5:c.1982_2185del	p.Gly661_Lys728del	p.G661_K728del	ENST00000234420	NM_000179.2	660	AAAGGTATGACTTCAGAGTCTGATTCCATTGGGTTGACACCAGGAGAGAAAAGTGAATTGGCCCTCTCTGCTCTAGGTGGTTGTGTCTTCTACCTCAAAAAATGCCTTATTGATCAGGAGCTTTTATCAATGGCTAATTTTGAAGAATATATTCCCTTGGATTCTGACACAGTCAGCACTACAAGATCTGGTGCTATCTTCACC/-																																																																															
TSHR	7253	MSKCC	GRCh37	14	81554356	81554356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	268	376	0	ENST00000298171.2:c.376C>A	p.Pro126Thr	p.P126T	ENST00000298171	NM_000369.2	126	Ccc/Acc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716235	52716235	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	197	567	0	ENST00000322088.6:c.679G>T	p.Ala227Ser	p.A227S	ENST00000322088	NM_014225.5	227	Gcg/Tcg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143181714	143181714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	119	252	0	ENST00000262992.4:c.619G>A	p.Ala207Thr	p.A207T	ENST00000262992	NM_001101669.1	207	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579882	7579882	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201382018		P-0070738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	29	425	0	ENST00000269305.4:c.31G>A	p.Glu11Lys	p.E11K	ENST00000269305	NM_001126112.2	11	Gag/Aag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118348681	118348681	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0070738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	121	279	0	ENST00000534358.1:c.3335-1G>T		p.X1112_splice	ENST00000534358	NM_005933.3	1112																																																																																
POT1	25913	MSKCC	GRCh37	7	124511069	124511069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	74	285	0	ENST00000357628.3:c.151G>T	p.Asp51Tyr	p.D51Y	ENST00000357628	NM_015450.2	51	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0070738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	522	283	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
POT1	25913	MSKCC	GRCh37	7	124503463	124503463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	135	321	0	ENST00000357628.3:c.487G>T	p.Asp163Tyr	p.D163Y	ENST00000357628	NM_015450.2	163	Gac/Tac																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518182	103518182	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	192	398	0	ENST00000355739.4:c.2120G>T	p.Arg707Met	p.R707M	ENST00000355739	NM_000123.3	707	aGg/aTg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139566715	139566715	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0070738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	182	373	0	ENST00000308874.7:c.800-1G>A		p.X267_splice	ENST00000308874		267																																																																																
EP300	2033	MSKCC	GRCh37	22	41573117	41573118	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0070738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	223	500	0	ENST00000263253.7:c.5402_5403del	p.Cys1801SerfsTer81	p.C1801Sfs*81	ENST00000263253	NM_001429.3	1801	tGC/t																																																																															
POT1	25913	MSKCC	GRCh37	7	124482923	124482923	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	86	296	0	ENST00000357628.3:c.1101G>T	p.Arg367Ser	p.R367S	ENST00000357628	NM_015450.2	367	agG/agT																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805625	46805625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	150	455	0	ENST00000290295.7:c.331G>A	p.Ala111Thr	p.A111T	ENST00000290295	NM_006361.5	111	Gcg/Acg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118359365	118359365	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0070738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	194	359	0	ENST00000534358.1:c.4369A>T	p.Lys1457Ter	p.K1457*	ENST00000534358	NM_005933.3	1457	Aag/Tag																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422344	47422344	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			747	422	367	0	ENST00000404338.3:c.412C>T	p.Gln138Ter	p.Q138*	ENST00000404338	NM_004491.4	138	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	219	227	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986870	36986877	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGGTGC	CCCGGTGC	-			P-0070740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	75	439	0	ENST00000354822.5:c.812_819del	p.Gly271ValfsTer165	p.G271Vfs*165	ENST00000354822	NM_001079668.2	271	gGCACCGGG/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7577560	7577560	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			64	246	384	0	ENST00000269305.4:c.721del	p.Ser241ProfsTer6	p.S241Pfs*6	ENST00000269305	NM_001126112.2	241	Tcc/cc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212522521	212522521	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148634484		P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			70	247	499	0	ENST00000342788.4:c.1904A>G	p.Tyr635Cys	p.Y635C	ENST00000342788	NM_005235.2	635	tAc/tGc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520219	9520219	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867360779		P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	85	404	0	ENST00000353224.5:c.2050G>A	p.Glu684Lys	p.E684K	ENST00000353224	NM_177990.2	684	Gag/Aag																																																																															
HGF	3082	MSKCC	GRCh37	7	81392049	81392049	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	171	315	0	ENST00000222390.5:c.228G>T	p.Arg76Ser	p.R76S	ENST00000222390	NM_000601.4	76	agG/agT																																																																															
USP8	9101	MSKCC	GRCh37	15	50784990	50784990	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs146125856		P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			107	14	258	2	ENST00000307179.4:c.2327T>C	p.Leu776Pro	p.L776P	ENST00000307179		776	cTt/cCt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905575	50905575	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	244	576	0	ENST00000440232.2:c.703G>C	p.Gly235Arg	p.G235R	ENST00000440232	NM_002691.3	235	Ggc/Cgc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31521239	31521239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	142	293	0	ENST00000344624.3:c.938G>A	p.Arg313Lys	p.R313K	ENST00000344624		313	aGa/aAa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87339198	87339198	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			58	190	336	0	ENST00000277120.3:c.780T>A	p.Ser260Arg	p.S260R	ENST00000277120		260	agT/agA																																																																															
PPARG	5468	MSKCC	GRCh37	3	12421283	12421283	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	106	438	0	ENST00000287820.6:c.163G>C	p.Asp55His	p.D55H	ENST00000287820	NM_015869.4	55	Gac/Cac																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99179949	99179949	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	235	438	0	ENST00000074304.5:c.1892A>T	p.Tyr631Phe	p.Y631F	ENST00000074304	NM_001134224.1	631	tAc/tTc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30093461	30093461	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	63	257	0	ENST00000331968.5:c.1802A>G	p.Lys601Arg	p.K601R	ENST00000331968	NM_002742.2	601	aAa/aGa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543879	212543879	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	219	349	1	ENST00000342788.4:c.1520G>T	p.Cys507Phe	p.C507F	ENST00000342788	NM_005235.2	507	tGt/tTt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15971364	15971364	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			60	231	415	1	ENST00000268712.3:c.4585A>G	p.Ile1529Val	p.I1529V	ENST00000268712	NM_006311.3	1529	Atc/Gtc																																																																															
RHEB	6009	MSKCC	GRCh37	7	151164258	151164258	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	43	191	0	ENST00000262187.5:c.502G>T	p.Glu168Ter	p.E168*	ENST00000262187	NM_005614.3	168	Gaa/Taa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513255	106513255	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs199590448		P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			919	190	356	0	ENST00000359195.3:c.2159A>G	p.Tyr720Cys	p.Y720C	ENST00000359195	NM_002649.2	720	tAt/tGt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448499	89448499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	179	363	0	ENST00000336596.2:c.1463G>A	p.Arg488Lys	p.R488K	ENST00000336596	NM_005233.5	488	aGg/aAg																																																																															
CCND2	894	MSKCC	GRCh37	12	4383306	4383306	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	189	393	1	ENST00000261254.3:c.100G>T	p.Glu34Ter	p.E34*	ENST00000261254	NM_001759.3	34	Gag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540037	187540037	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			47	247	457	0	ENST00000441802.2:c.7703T>G	p.Leu2568Ter	p.L2568*	ENST00000441802	NM_005245.3	2568	tTa/tGa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827181	72827181	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	186	390	0	ENST00000268489.5:c.9400T>G	p.Leu3134Val	p.L3134V	ENST00000268489	NM_006885.3	3134	Ttg/Gtg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429402	78429402	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	114	361	0	ENST00000370768.2:c.1042-2A>G		p.X348_splice	ENST00000370768	NM_003902.3	348																																																																																
SERPINB4	6318	MSKCC	GRCh37	18	61305255	61305255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			79	40	196	0	ENST00000341074.5:c.871G>A	p.Glu291Lys	p.E291K	ENST00000341074	NM_002974.2	291	Gag/Aag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731089	162731089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	345	489	0	ENST00000367921.3:c.944C>A	p.Pro315His	p.P315H	ENST00000367921	NM_006182.2	315	cCt/cAt																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64288929	64288929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	196	329	2	ENST00000370651.3:c.325G>C	p.Gly109Arg	p.G109R	ENST00000370651	NM_003463.4	109	Ggg/Cgg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162722892	162722892	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	96	366	0	ENST00000367921.3:c.90C>G	p.Cys30Trp	p.C30W	ENST00000367921	NM_006182.2	30	tgC/tgG																																																																															
CDH1	999	MSKCC	GRCh37	16	68862190	68862190	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	198	350	0	ENST00000261769.5:c.2278G>T	p.Gly760Cys	p.G760C	ENST00000261769	NM_004360.3	760	Ggc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0070744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	278	202	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0070744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	265	311	2	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242494	55242494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	280	317	2	ENST00000275493.2:c.2264C>G	p.Ala755Gly	p.A755G	ENST00000275493	NM_005228.3	755	gCc/gGc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048737	180048737	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144803521		P-0070744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	128	422	0	ENST00000261937.6:c.1825G>A	p.Asp609Asn	p.D609N	ENST00000261937	NM_182925.4	609	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577157	7577157	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0070744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			46	185	367	0	ENST00000269305.4:c.783-2A>C		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
PDGFRB	5159	MSKCC	GRCh37	5	149509440	149509440	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	156	450	0	ENST00000261799.4:c.1459C>A	p.Gln487Lys	p.Q487K	ENST00000261799	NM_002609.3	487	Cag/Aag																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230561520	230561520	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0070744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	141	453	0				ENST00000391860	NM_001258311.1																																																																																	
STK11	6794	MSKCC	GRCh37	19	1223003	1223003	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	30	423	0	ENST00000326873.7:c.940C>G	p.Pro314Ala	p.P314A	ENST00000326873	NM_000455.4	314	Cct/Gct																																																																															
ATM	472	MSKCC	GRCh37	11	108201110	108201110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	178	372	0	ENST00000278616.4:c.7477G>A	p.Glu2493Lys	p.E2493K	ENST00000278616	NM_000051.3	2493	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092843	27092843	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	43	348	0	ENST00000324856.7:c.2864C>G	p.Ala955Gly	p.A955G	ENST00000324856	NM_006015.4	955	gCc/gGc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630653	187630653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	120	385	0	ENST00000441802.2:c.329G>A	p.Arg110Lys	p.R110K	ENST00000441802	NM_005245.3	110	aGa/aAa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943708	71943708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	201	448	0	ENST00000298229.2:c.1751C>T	p.Ser584Leu	p.S584L	ENST00000298229	NM_001567.3	584	tCg/tTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70357666	70357677	+	frameshift_variant	Frame_Shift_Del	DEL	TACCAGAGCACC	TACCAGAGCACC	GGTA			P-0070744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			31	345	257	1	ENST00000374080.3:c.5917_5928delinsGGTA	p.Tyr1973GlyfsTer75	p.Y1973Gfs*75	ENST00000374080		1973	TACCAGAGCACC/GGTA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0070747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	187	407	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578232	7578232	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0070747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	49	398	0	ENST00000269305.4:c.617T>A	p.Leu206Ter	p.L206*	ENST00000269305	NM_001126112.2	206	tTg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112175814	112175814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	34	324	0	ENST00000257430.4:c.4523C>T	p.Ala1508Val	p.A1508V	ENST00000257430	NM_000038.5	1508	gCt/gTt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554389	141554389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	89	325	0	ENST00000220592.5:c.1762C>T	p.Gln588Ter	p.Q588*	ENST00000220592	NM_012154.3	588	Cag/Tag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710590	117710590	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	31	382	0	ENST00000368508.3:c.1682C>G	p.Pro561Arg	p.P561R	ENST00000368508	NM_002944.2	561	cCg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0070750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	46	330	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0070750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	57	209	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0070750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	54	287	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	41	322	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0070750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	38	184	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710640	114710640	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	66	360	0	ENST00000543371.1:c.125C>G	p.Ala42Gly	p.A42G	ENST00000543371	NM_001198531.1	42	gCt/gGt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	102	325	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	37	245	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	13	355	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1023835002		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	41	341	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	162	448	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	240	440	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	47	333	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	115	386	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968322	2968323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762770988		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	30	297	0	ENST00000396946.4:c.1663dup	p.Arg555ProfsTer38	p.R555Pfs*38	ENST00000396946	NM_032415.4	555	cgg/cCgg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120226	70120226	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	69	435	0	ENST00000245479.2:c.1228C>T	p.Gln410Ter	p.Q410*	ENST00000245479	NM_000346.3	410	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115837	8115837	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200935603		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	144	418	0	ENST00000346208.3:c.1183G>A	p.Ala395Thr	p.A395T	ENST00000346208		395	Gcc/Acc																																																																															
B2M	567	MSKCC	GRCh37	15	45003746	45003746	+	start_lost	Translation_Start_Site	SNP	T	T	C	rs1057519879		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	36	340	0	ENST00000558401.1:c.2T>C	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	aTg/aCg																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72890203	72890203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758931723		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	77	240	0	ENST00000325599.8:c.479G>A	p.Arg160Gln	p.R160Q	ENST00000325599	NM_018130.2	160	cGg/cAg																																																																															
TP63	8626	MSKCC	GRCh37	3	189582117	189582117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	102	359	0	ENST00000264731.3:c.676C>T	p.Arg226Cys	p.R226C	ENST00000264731	NM_003722.4	226	Cgc/Tgc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612341	1612341	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376471101		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	34	418	0	ENST00000344749.5:c.1678C>T	p.Arg560Trp	p.R560W	ENST00000344749	NM_001136139.2	560	Cgg/Tgg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852217		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	133	413	2	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120013	70120013	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	54	343	1	ENST00000245479.2:c.1015C>T	p.Gln339Ter	p.Q339*	ENST00000245479	NM_000346.3	339	Cag/Tag																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513282	44513287	+	inframe_deletion	In_Frame_Del	DEL	CCACCG	CCACCG	-	rs769920981		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	21	322	0	ENST00000291552.4:c.648_653del	p.Gly222_Gly223del	p.G222_G223del	ENST00000291552	NM_006758.2	216	ggCGGTGGt/ggt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829974	72829974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	41	370	0	ENST00000268489.5:c.6607C>T	p.Arg2203Cys	p.R2203C	ENST00000268489	NM_006885.3	2203	Cgt/Tgt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900479	3900479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759312345		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	55	393	0	ENST00000262367.5:c.617C>T	p.Ala206Val	p.A206V	ENST00000262367	NM_004380.2	206	gCg/gTg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308419	30308419	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	107	290	0	ENST00000262643.3:c.433C>T	p.Arg145Ter	p.R145*	ENST00000262643	NM_001238.2	145	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832394	72832394	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774988278		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	142	380	0	ENST00000268489.5:c.4187G>A	p.Arg1396His	p.R1396H	ENST00000268489	NM_006885.3	1396	cGc/cAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340356	8340356	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs553232071		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	91	343	0	ENST00000356435.5:c.5240G>A	p.Arg1747His	p.R1747H	ENST00000356435		1747	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097736	27097736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1490783133		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	38	381	0	ENST00000324856.7:c.3325C>T	p.Arg1109Trp	p.R1109W	ENST00000324856	NM_006015.4	1109	Cgg/Tgg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005032	150005032	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750553952		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	120	383	0	ENST00000253339.5:c.1193C>T	p.Ser398Leu	p.S398L	ENST00000253339		398	tCg/tTg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148524346	148524346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377467108		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	26	270	0	ENST00000320356.2:c.638G>A	p.Arg213His	p.R213H	ENST00000320356	NM_004456.4	213	cGc/cAc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631623	90631623	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370851685		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	103	408	0	ENST00000330062.3:c.646G>A	p.Gly216Ser	p.G216S	ENST00000330062	NM_002168.2	216	Ggc/Agc																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99812428	99812428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	50	226	0	ENST00000280892.6:c.241C>T	p.Arg81Trp	p.R81W	ENST00000280892	NM_001130678.1	81	Cgg/Tgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925402	114925402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs768101780		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	39	252	0	ENST00000543371.1:c.1485del	p.Ser496ProfsTer5	p.S496Pfs*5	ENST00000543371	NM_001198531.1	494	Ccc/cc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878749	151878749	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1211949081		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	114	384	0	ENST00000262189.6:c.6196C>T	p.Arg2066Ter	p.R2066*	ENST00000262189	NM_170606.2	2066	Cga/Tga																																																																															
WT1	7490	MSKCC	GRCh37	11	32450105	32450105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1190263054		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	91	406	0	ENST00000332351.3:c.707C>T	p.Ala236Val	p.A236V	ENST00000332351	NM_024426.4	236	gCg/gTg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982332	201982332	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			737	40	416	0	ENST00000359651.3:c.715del	p.Asp239IlefsTer15	p.D239Ifs*15	ENST00000359651		237	aaG/aa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662475	227662475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	47	462	0	ENST00000305123.5:c.980G>A	p.Arg327His	p.R327H	ENST00000305123	NM_005544.2	327	cGc/cAc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111167	193111167	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	69	370	0	ENST00000367435.3:c.700C>T	p.Arg234Ter	p.R234*	ENST00000367435	NM_024529.4	234	Cga/Tga																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19258559	19258559	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141688102		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	49	419	0	ENST00000162023.5:c.341G>A	p.Arg114Gln	p.R114Q	ENST00000162023		114	cGg/cAg																																																																															
SESN1	27244	MSKCC	GRCh37	6	109311950	109311950	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1261981726		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	21	259	0	ENST00000436639.2:c.1322C>T	p.Ala441Val	p.A441V	ENST00000436639	NM_014454.2	441	gCt/gTt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803165	1803165	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1031160906		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	49	402	0	ENST00000260795.2:c.517C>T	p.Arg173Cys	p.R173C	ENST00000260795		173	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420913	49420913	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756017412		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	130	379	0	ENST00000301067.7:c.14836G>A	p.Val4946Ile	p.V4946I	ENST00000301067	NM_003482.3	4946	Gtc/Atc																																																																															
ATR	545	MSKCC	GRCh37	3	142188406	142188406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs910993590		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	27	265	0	ENST00000350721.4:c.6325C>T	p.Arg2109Cys	p.R2109C	ENST00000350721	NM_001184.3	2109	Cgc/Tgc																																																																															
BRAF	673	MSKCC	GRCh37	7	140500228	140500228	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs547693139		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	53	375	0	ENST00000288602.6:c.914C>T	p.Ala305Val	p.A305V	ENST00000288602	NM_004333.4	305	gCg/gTg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86659176	86659176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	53	207	0	ENST00000274376.6:c.1465C>T	p.Arg489Cys	p.R489C	ENST00000274376	NM_002890.2	489	Cgt/Tgt																																																																															
AXL	558	MSKCC	GRCh37	19	41726651	41726651	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1413460761		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	105	348	0	ENST00000301178.4:c.196G>A	p.Glu66Lys	p.E66K	ENST00000301178	NM_021913.4	66	Gag/Aag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933842	39933842	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745720817		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	47	445	0	ENST00000378444.4:c.757G>A	p.Val253Ile	p.V253I	ENST00000378444	NM_001123385.1	253	Gtc/Atc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066846	30066846	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758982696		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	82	306	0	ENST00000331968.5:c.2285G>A	p.Arg762His	p.R762H	ENST00000331968	NM_002742.2	762	cGc/cAc																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873757	35873757	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	54	319	0	ENST00000216797.5:c.94A>G	p.Ser32Gly	p.S32G	ENST00000216797	NM_020529.2	32	Agc/Ggc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302370	15302370	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775584737		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	38	414	0	ENST00000263388.2:c.901G>A	p.Val301Met	p.V301M	ENST00000263388	NM_000435.2	301	Gtg/Atg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64135944	64135944	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1221790001		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	61	509	0	ENST00000334205.4:c.1205C>T	p.Ser402Leu	p.S402L	ENST00000334205	NM_003942.2	402	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	66	247	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213530	36213530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	44	394	0	ENST00000222270.7:c.2632G>A	p.Ala878Thr	p.A878T	ENST00000222270	NM_014727.1	878	Gcc/Acc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836275	151836275	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1469176725		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	99	307	0	ENST00000262189.6:c.14530G>A	p.Ala4844Thr	p.A4844T	ENST00000262189	NM_170606.2	4844	Gca/Aca																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343130	118343130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	30	313	0	ENST00000534358.1:c.1256C>T	p.Ser419Leu	p.S419L	ENST00000534358	NM_005933.3	419	tCg/tTg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123185172	123185172	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	52	203	0	ENST00000218089.9:c.1124T>A	p.Ile375Asn	p.I375N	ENST00000218089	NM_001042749.1	375	aTt/aAt																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424606	47424606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201565056		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	107	366	0	ENST00000404338.3:c.2674G>A	p.Ala892Thr	p.A892T	ENST00000404338	NM_004491.4	892	Gct/Act																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15833992	15833992	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	21	208	0	ENST00000307771.7:c.753del	p.Val253Ter	p.V253*	ENST00000307771	NM_005089.3	250	gtG/gt																																																																															
PGR	5241	MSKCC	GRCh37	11	100933289	100933289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	24	269	0	ENST00000325455.5:c.2101G>A	p.Ala701Thr	p.A701T	ENST00000325455	NM_001202474.3	701	Gca/Aca																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754343	57754343	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	42	318	0	ENST00000274289.3:c.508A>G	p.Ile170Val	p.I170V	ENST00000274289	NM_006622.3	170	Att/Gtt																																																																															
MED12	9968	MSKCC	GRCh37	X	70346281	70346281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	37	327	0	ENST00000374080.3:c.2632G>A	p.Asp878Asn	p.D878N	ENST00000374080		878	Gac/Aac																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349216	89349216	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	39	384	0	ENST00000301030.4:c.3734A>G	p.Lys1245Arg	p.K1245R	ENST00000301030	NM_001256183.1	1245	aAg/aGg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62294216	62294216	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	A			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	105	362	0	ENST00000482936.1:c.512C>A	p.Ser171Tyr	p.S171Y	ENST00000482936		171	tCc/tAc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44921907	44921907	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375011484		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	61	195	0	ENST00000377967.4:c.1441C>T	p.Arg481Cys	p.R481C	ENST00000377967	NM_021140.2	481	Cgc/Tgc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166577	118166577	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773285739		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	46	322	2	ENST00000369448.3:c.1087G>A	p.Val363Ile	p.V363I	ENST00000369448	NM_017709.3	363	Gtc/Atc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943436	17943436	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs933201496		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	116	448	0	ENST00000458235.1:c.2572C>T	p.Gln858Ter	p.Q858*	ENST00000458235	NM_000215.3	858	Cag/Tag																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027422	48027423	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	113	309	0	ENST00000234420.5:c.2301_2302insAT	p.Pro768IlefsTer8	p.P768Ifs*8	ENST00000234420	NM_000179.2	767	act/acTAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42050006	42050006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	14	237	0	ENST00000219905.7:c.7160C>T	p.Ala2387Val	p.A2387V	ENST00000219905	NM_001164273.1	2387	gCa/gTa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348121	89348121	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	42	439	0	ENST00000301030.4:c.4829A>G	p.Lys1610Arg	p.K1610R	ENST00000301030	NM_001256183.1	1610	aAg/aGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431706	49431706	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1302505340		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	50	442	0	ENST00000301067.7:c.9433C>T	p.Pro3145Ser	p.P3145S	ENST00000301067	NM_003482.3	3145	Cct/Tct																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866634	37866634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	66	433	0	ENST00000269571.5:c.801C>A	p.His267Gln	p.H267Q	ENST00000269571		267	caC/caA																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111855980	111855980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	137	376	0	ENST00000341259.2:c.31C>T	p.Pro11Ser	p.P11S	ENST00000341259	NM_005475.2	11	Ccc/Tcc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830490	72830490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	109	394	0	ENST00000268489.5:c.6091C>A	p.Pro2031Thr	p.P2031T	ENST00000268489	NM_006885.3	2031	Cca/Aca																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662712	227662712	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	52	416	0	ENST00000305123.5:c.743A>G	p.Asn248Ser	p.N248S	ENST00000305123	NM_005544.2	248	aAc/aGc																																																																															
NADK	65220	MSKCC	GRCh37	1	1685812	1685812	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	30	432	0	ENST00000341426.5:c.854A>C	p.Glu285Ala	p.E285A	ENST00000341426	NM_023018.4	285	gAg/gCg																																																																															
TET2	54790	MSKCC	GRCh37	4	106197536	106197536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	39	334	0	ENST00000380013.4:c.5869C>T	p.His1957Tyr	p.H1957Y	ENST00000380013	NM_001127208.2	1957	Cat/Tat																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256120	16256120	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759801779		P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	132	427	0	ENST00000375759.3:c.3385G>A	p.Val1129Ile	p.V1129I	ENST00000375759	NM_015001.2	1129	Gtt/Att																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349174	89349174	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	38	408	0	ENST00000301030.4:c.3776A>G	p.Lys1259Arg	p.K1259R	ENST00000301030	NM_001256183.1	1259	aAg/aGg																																																																															
RAB35	11021	MSKCC	GRCh37	12	120536676	120536676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070751-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	71	412	1	ENST00000229340.5:c.416C>T	p.Ala139Val	p.A139V	ENST00000229340	NM_006861.6	139	gCc/gTc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0070752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	227	305	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871757	12871757	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0070752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	271	275	0	ENST00000228872.4:c.476-2A>G		p.X159_splice	ENST00000228872	NM_004064.3	159																																																																																
CHEK2	11200	MSKCC	GRCh37	22	29115420	29115421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGCCT			P-0070752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	150	227	0	ENST00000328354.6:c.641_645dup	p.Leu216ArgfsTer3	p.L216Rfs*3	ENST00000328354	NM_007194.3	215	-/AGGCA																																																																															
CDH1	999	MSKCC	GRCh37	16	68857465	68857465	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070752-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	219	302	0	ENST00000261769.5:c.2100del	p.Val701SerfsTer21	p.V701Sfs*21	ENST00000261769	NM_004360.3	700	ccT/cc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0070753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	314	288	0				ENST00000310581	NM_198253.2																																																																																	
PDGFRA	5156	MSKCC	GRCh37	4	55138642	55138642	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143344944		P-0070753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	100	311	0	ENST00000257290.5:c.1319C>T	p.Thr440Met	p.T440M	ENST00000257290	NM_006206.4	440	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	202	339	0	ENST00000269305.4:c.392A>G	p.Asn131Ser	p.N131S	ENST00000269305	NM_001126112.2	131	aAc/aGc																																																																															
MET	4233	MSKCC	GRCh37	7	116417464	116417464	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913243		P-0070753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	514	243	0	ENST00000397752.3:c.3281A>G	p.His1094Arg	p.H1094R	ENST00000397752	NM_000245.2	1094	cAt/cGt																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46727055	46727055	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0070753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	151	267	0	ENST00000371975.4:c.889G>A	p.Glu297Lys	p.E297K	ENST00000371975	NM_003579.3	297	Gag/Aag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922157	39922157	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	110	427	0	ENST00000378444.4:c.4015G>C	p.Glu1339Gln	p.E1339Q	ENST00000378444	NM_001123385.1	1339	Gag/Cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0070753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	212	281	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233207	46233207	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	238	328	0	ENST00000334344.6:c.1426C>T	p.Gln476Ter	p.Q476*	ENST00000334344	NM_152641.2	476	Caa/Taa																																																																															
ATRX	546	MSKCC	GRCh37	X	76937503	76937503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	58	334	0	ENST00000373344.5:c.3245G>A	p.Ser1082Asn	p.S1082N	ENST00000373344	NM_000489.3	1082	aGt/aAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579325	7579325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	189	357	0	ENST00000269305.4:c.362C>T	p.Ser121Phe	p.S121F	ENST00000269305	NM_001126112.2	121	tCt/tTt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11313922	11313922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	138	335	0	ENST00000361445.4:c.814G>T	p.Val272Phe	p.V272F	ENST00000361445	NM_004958.3	272	Gtc/Ttc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143159110	143159110	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	150	207	0	ENST00000262992.4:c.743G>T	p.Trp248Leu	p.W248L	ENST00000262992	NM_001101669.1	248	tGg/tTg																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679688	33679688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	189	412	0	ENST00000308377.4:c.2393G>T	p.Arg798Leu	p.R798L	ENST00000308377	NM_152270.3	798	cGc/cTc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721909	176721909	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	218	442	0	ENST00000439151.2:c.7540C>T	p.Gln2514Ter	p.Q2514*	ENST00000439151	NM_022455.4	2514	Cag/Tag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412496	63412496	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	58	357	0	ENST00000330258.3:c.671C>A	p.Pro224His	p.P224H	ENST00000330258	NM_152424.3	224	cCt/cAt																																																																															
SYK	6850	MSKCC	GRCh37	9	93607766	93607766	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs773317421		P-0070753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	76	315	0	ENST00000375746.1:c.468G>T	p.Lys156Asn	p.K156N	ENST00000375746	NM_001174167.1	156	aaG/aaT																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45873463	45873463	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0070753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	74	275	0	ENST00000391945.4:c.33C>G	p.Tyr11Ter	p.Y11*	ENST00000391945	NM_000400.3	11	taC/taG																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953373	17953373	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	131	357	0	ENST00000458235.1:c.613C>A	p.Leu205Met	p.L205M	ENST00000458235	NM_000215.3	205	Ctg/Atg																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383669	84383669	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	210	320	0	ENST00000321945.7:c.1183G>T	p.Glu395Ter	p.E395*	ENST00000321945	NM_139076.2	395	Gaa/Taa																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726549	46726549	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	212	404	0	ENST00000371975.4:c.628G>C	p.Glu210Gln	p.E210Q	ENST00000371975	NM_003579.3	210	Gaa/Caa																																																																															
INSR	3643	MSKCC	GRCh37	19	7267621	7267621	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	81	353	0	ENST00000302850.5:c.387G>T	p.Lys129Asn	p.K129N	ENST00000302850	NM_000208.2	129	aaG/aaT																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781299	135781299	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	170	355	0	ENST00000298552.3:c.1666G>C	p.Asp556His	p.D556H	ENST00000298552	NM_001162426.1	556	Gac/Cac																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2123917	2123917	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	154	335	0	ENST00000349721.2:c.3961A>T	p.Thr1321Ser	p.T1321S	ENST00000349721	NM_003070.3	1321	Acg/Tcg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713613	30713613	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs200361387		P-0070753-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	178	394	0	ENST00000359013.4:c.1013G>C	p.Arg338Pro	p.R338P	ENST00000359013	NM_001024847.2	338	cGg/cCg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0070763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	57	670	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115435	115115437	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-	rs1319662056		P-0070763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	65	485	0	ENST00000257566.3:c.889_891del	p.Asn297del	p.N297del	ENST00000257566	NM_016569.3	297	AAC/-																																																																															
CDH1	999	MSKCC	GRCh37	16	68857519	68857520	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0070763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	42	488	0	ENST00000261769.5:c.2155dup	p.Ala719GlyfsTer29	p.A719Gfs*29	ENST00000261769	NM_004360.3	718	-/G																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260193	16260193	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			751	48	725	0	ENST00000375759.3:c.7458del	p.Ile2489SerfsTer10	p.I2489Sfs*10	ENST00000375759	NM_015001.2	2486	tcT/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0070766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	71	552	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1220371	1220371	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0070766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	63	476	0	ENST00000326873.7:c.465-1G>C		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
CD79A	973	MSKCC	GRCh37	19	42383164	42383164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	61	537	0	ENST00000221972.3:c.184G>T	p.Ala62Ser	p.A62S	ENST00000221972	NM_021601.3	62	Gcc/Tcc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520735	176520735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	43	363	0	ENST00000292408.4:c.1478G>T	p.Arg493Leu	p.R493L	ENST00000292408	NM_213647.1	493	cGg/cTg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	430162	430162	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0070766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	61	425	0	ENST00000399788.2:c.2540A>T	p.Lys847Met	p.K847M	ENST00000399788	NM_001042603.1	847	aAg/aTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29587386	29587386	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0070766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	46	350	0	ENST00000358273.4:c.4431-1G>A		p.X1477_splice	ENST00000358273	NM_001042492.2	1477																																																																																
TOP1	7150	MSKCC	GRCh37	20	39726955	39726955	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	73	359	0	ENST00000361337.2:c.953A>T	p.Gln318Leu	p.Q318L	ENST00000361337	NM_003286.2	318	cAg/cTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453144	140453146	+	missense_variant	Missense_Mutation	ONP	TAG	TAG	AGA			P-0070766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	29	357	1	ENST00000288602.6:c.1789_1791delinsTCT	p.Leu597Ser	p.L597S	ENST00000288602	NM_004333.4	597	CTA/TCT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	51	399	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882019		P-0070768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	213	551	0	ENST00000269305.4:c.455dup	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45858976	45858976	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757432268		P-0070768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	65	388	0	ENST00000391945.4:c.1490G>A	p.Arg497His	p.R497H	ENST00000391945	NM_000400.3	497	cGt/cAt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17951110	17951110	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777790283		P-0070768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	234	399	1	ENST00000458235.1:c.1183C>T	p.Arg395Cys	p.R395C	ENST00000458235	NM_000215.3	395	Cgt/Tgt																																																																															
RRAS	6237	MSKCC	GRCh37	19	50143324	50143324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	82	501	0	ENST00000246792.3:c.32G>A	p.Arg11Gln	p.R11Q	ENST00000246792	NM_006270.3	11	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112155022	112155022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786201795		P-0070768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	83	444	0	ENST00000257430.4:c.1293G>A	p.Met431Ile	p.M431I	ENST00000257430	NM_000038.5	431	atG/atA																																																																															
APC	324	MSKCC	GRCh37	5	112175936	112175936	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs863225357		P-0070768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	76	476	0	ENST00000257430.4:c.4645C>T	p.Gln1549Ter	p.Q1549*	ENST00000257430	NM_000038.5	1549	Caa/Taa																																																																															
CCNE1	898	MSKCC	GRCh37	19	30314616	30314616	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	160	450	0	ENST00000262643.3:c.1165C>G	p.Leu389Val	p.L389V	ENST00000262643	NM_001238.2	389	Ctc/Gtc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0070819-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	378	674	1	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69031750	69031750	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0070819-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	270	392	0	ENST00000288368.4:c.3504+1G>A		p.X1168_splice	ENST00000288368	NM_024870.2	1168																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48575063	48575064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCGGAAA			P-0070819-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	25	341	0	ENST00000342988.3:c.258_264dup	p.Gly89SerfsTer17	p.G89Sfs*17	ENST00000342988	NM_005359.5	86	ggt/ggTCGGAAAt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577479	64577498	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGGTCCGGCTCCTCTCGG	CCAGGTCCGGCTCCTCTCGG	-			P-0070819-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	191	481	0	ENST00000337652.1:c.84_103del	p.Arg29AlafsTer81	p.R29Afs*81	ENST00000337652	NM_130803.2	28	ggCCGAGAGGAGCCGGACCTGGtg/ggtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	75	327	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0070821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	80	544	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53250046	53250047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs782600511		P-0070821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	71	191	2	ENST00000375401.3:c.202dup	p.Arg68ProfsTer7	p.R68Pfs*7	ENST00000375401	NM_004187.3	68	cga/cCga																																																																															
ALK	238	MSKCC	GRCh37	2	29917755	29917755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	160	407	0	ENST00000389048.3:c.913G>A	p.Asp305Asn	p.D305N	ENST00000389048	NM_004304.4	305	Gat/Aat																																																																															
POT1	25913	MSKCC	GRCh37	7	124483006	124483006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	37	234	0	ENST00000357628.3:c.1018C>T	p.His340Tyr	p.H340Y	ENST00000357628	NM_015450.2	340	Cat/Tat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974708	21974735	+	protein_altering_variant	In_Frame_Del	DEL	GCGTTGGGCAGCGCCCCCGCCTCCAGCA	GCGTTGGGCAGCGCCCCCGCCTCCAGCA	T			P-0070821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	158	489	0	ENST00000304494.5:c.92_119delinsA	p.Leu31_Ala40delinsGln	p.L31_A40delinsQ	ENST00000304494	NM_000077.4	31	cTGCTGGAGGCGGGGGCGCTGCCCAACGCa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0070822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	72	327	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0070822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	125	333	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356149	66356149	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs142589245		P-0070822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	44	365	0	ENST00000273854.3:c.1348T>G	p.Leu450Val	p.L450V	ENST00000273854	NM_004439.5	450	Ttg/Gtg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730032	41730032	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	32	389	0	ENST00000242208.4:c.497G>T	p.Arg166Met	p.R166M	ENST00000242208	NM_002192.2	166	aGg/aTg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793223	242793223	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762704059		P-0070822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	28	341	0	ENST00000334409.5:c.854C>T	p.Ser285Phe	p.S285F	ENST00000334409	NM_005018.2	285	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0070822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	89	255	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SMYD3	64754	MSKCC	GRCh37	1	245927411	245927411	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	32	293	0	ENST00000388985.4:c.1117G>C	p.Val373Leu	p.V373L	ENST00000388985		373	Gtg/Ctg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730112	41730113	+	missense_variant	Missense_Mutation	DNP	CT	CT	TC			P-0070822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	26	364	1	ENST00000242208.4:c.416_417delinsGA	p.Glu139Gly	p.E139G	ENST00000242208	NM_002192.2	139	gAG/gGA																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729719	41729719	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	33	371	0	ENST00000242208.4:c.810A>T	p.Lys270Asn	p.K270N	ENST00000242208	NM_002192.2	270	aaA/aaT																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984049	2984049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	39	422	0	ENST00000396946.4:c.481G>A	p.Asp161Asn	p.D161N	ENST00000396946	NM_032415.4	161	Gat/Aat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630456	187630456	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	88	500	0	ENST00000441802.2:c.526G>T	p.Ala176Ser	p.A176S	ENST00000441802	NM_005245.3	176	Gca/Tca																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610454	10610454	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	49	493	0	ENST00000171111.5:c.256C>T	p.Gln86Ter	p.Q86*	ENST00000171111	NM_203500.1	86	Cag/Tag																																																																															
ATRX	546	MSKCC	GRCh37	X	76938323	76938323	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	34	191	0	ENST00000373344.5:c.2425C>G	p.Gln809Glu	p.Q809E	ENST00000373344	NM_000489.3	809	Caa/Gaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0070824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	53	282	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
HGF	3082	MSKCC	GRCh37	7	81381547	81381547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	73	321	0	ENST00000222390.5:c.514C>A	p.Leu172Ile	p.L172I	ENST00000222390	NM_000601.4	172	Cta/Ata																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346031	73346031	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	89	295	0	ENST00000377767.4:c.1507G>T	p.Gly503Cys	p.G503C	ENST00000377767	NM_014953.3	503	Ggt/Tgt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5073730	5073730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	41	385	0	ENST00000381652.3:c.1809G>T	p.Lys603Asn	p.K603N	ENST00000381652	NM_004972.3	603	aaG/aaT																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39629561	39629561	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	38	290	0	ENST00000262039.4:c.2255C>A	p.Thr752Lys	p.T752K	ENST00000262039	NM_002647.2	752	aCa/aAa																																																																															
PPARG	5468	MSKCC	GRCh37	3	12447523	12447523	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	77	433	0	ENST00000287820.6:c.762C>G	p.Phe254Leu	p.F254L	ENST00000287820	NM_015869.4	254	ttC/ttG																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143935	11144488	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTTGGGACTGACTGGCACCTCTTCCCCCAGGACCTGCAAGCGCAGGACCGAGCCCACCGCATCGGGCAGCAGAACGAGGTGCGTGTGCTCCGCCTCTGCACCGTCAACAGCGTGGAGGAGAAGATCCTAGCTGCAGCCAAGTACAAGCTCAACGTGGACCAGAAGGTGATCCAGGCCGGCATGTTCGACCAGAAGTCCTCCAGCCATGAGCGGCGCGCCTTCCTGCAGGCCATCCTGGAGCACGAGGAGCAGGATGAGGTGAGCCCAGCACCGGCCCCGACCCCTCCCCAGCGTGAATGGTGGACGCGTGAGCGGCTTTCATTTTTGTTTTTTTACCTTTTTTGCACTCTTATTTTTTTTGCATCCCTTTGGAGTAAAGGGAGTGTGGGCTGAACGGAAAGAGGATGAGTACTTGCTTTTTCTTTGAAGTGGTTTTTTTTTCTAAACTGCTGGTGAAAGACGCCGGATTGACAGCCCTGGAGACTGAAGTCCTCTATTTATCCACAGAGCAGACACTGCAGCACGGGCAGCGGCAGTGCCAGCTTCGCCCACA	CTTTGGGACTGACTGGCACCTCTTCCCCCAGGACCTGCAAGCGCAGGACCGAGCCCACCGCATCGGGCAGCAGAACGAGGTGCGTGTGCTCCGCCTCTGCACCGTCAACAGCGTGGAGGAGAAGATCCTAGCTGCAGCCAAGTACAAGCTCAACGTGGACCAGAAGGTGATCCAGGCCGGCATGTTCGACCAGAAGTCCTCCAGCCATGAGCGGCGCGCCTTCCTGCAGGCCATCCTGGAGCACGAGGAGCAGGATGAGGTGAGCCCAGCACCGGCCCCGACCCCTCCCCAGCGTGAATGGTGGACGCGTGAGCGGCTTTCATTTTTGTTTTTTTACCTTTTTTGCACTCTTATTTTTTTTGCATCCCTTTGGAGTAAAGGGAGTGTGGGCTGAACGGAAAGAGGATGAGTACTTGCTTTTTCTTTGAAGTGGTTTTTTTTTCTAAACTGCTGGTGAAAGACGCCGGATTGACAGCCCTGGAGACTGAAGTCCTCTATTTATCCACAGAGCAGACACTGCAGCACGGGCAGCGGCAGTGCCAGCTTCGCCCACA	-			P-0070824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	36	380	0	ENST00000344626.4:c.3547-29_3822del		p.X1183_splice	ENST00000344626	NM_003072.3	1183																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0070825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	375	370	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040998	47040998	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	281	266	0	ENST00000329236.7:c.1294C>T	p.Gln432Ter	p.Q432*	ENST00000329236	NM_001204466.1	432	Caa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108119762	108119762	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	140	329	0	ENST00000278616.4:c.1168G>C	p.Glu390Gln	p.E390Q	ENST00000278616	NM_000051.3	390	Gaa/Caa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16265367	16265367	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs373760597		P-0070825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	129	429	0	ENST00000375759.3:c.10859A>G	p.Asn3620Ser	p.N3620S	ENST00000375759	NM_015001.2	3620	aAt/aGt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981767	70981767	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			796	275	466	0	ENST00000276594.2:c.329A>T	p.Glu110Val	p.E110V	ENST00000276594	NM_024504.3	110	gAa/gTa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117687415	117687415	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	25	331	0	ENST00000368508.3:c.2636G>C	p.Ser879Thr	p.S879T	ENST00000368508	NM_002944.2	879	aGt/aCt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68984755	68984755	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	86	325	0	ENST00000288368.4:c.1519T>A	p.Tyr507Asn	p.Y507N	ENST00000288368	NM_024870.2	507	Tac/Aac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532858	187532858	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	64	347	0	ENST00000441802.2:c.9535G>C	p.Gly3179Arg	p.G3179R	ENST00000441802	NM_005245.3	3179	Gga/Cga																																																																															
E2F3	1871	MSKCC	GRCh37	6	20480173	20480173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	40	298	0	ENST00000346618.3:c.490C>A	p.Pro164Thr	p.P164T	ENST00000346618	NM_001949.4	164	Cca/Aca																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	156	340	4	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	205	257	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55087031	55087031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373129709		P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	39	217	0	ENST00000275493.2:c.61G>A	p.Ala21Thr	p.A21T	ENST00000275493	NM_005228.3	21	Gcg/Acg																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	292	445	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
SPOP	8405	MSKCC	GRCh37	17	47684731	47684731	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	202	294	0	ENST00000347630.2:c.718C>T	p.Arg240Ter	p.R240*	ENST00000347630	NM_001007230.1	240	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	226	501	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101282	27101282	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199776442		P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	329	497	0	ENST00000324856.7:c.4564G>A	p.Ala1522Thr	p.A1522T	ENST00000324856	NM_006015.4	1522	Gcc/Acc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678560	88678560	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758189455		P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	240	413	2	ENST00000360948.2:c.976C>T	p.Arg326Cys	p.R326C	ENST00000360948	NM_001012338.2	326	Cgt/Tgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685308	89685308	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs876660634		P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	98	239	0	ENST00000371953.3:c.203A>G	p.Tyr68Cys	p.Y68C	ENST00000371953	NM_000314.4	68	tAc/tGc																																																																															
PARP1	142	MSKCC	GRCh37	1	226567647	226567647	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	38	488	2	ENST00000366794.5:c.1519del	p.Ser507AlafsTer17	p.S507Afs*17	ENST00000366794	NM_001618.3	507	Agc/gc																																																																															
RAB35	11021	MSKCC	GRCh37	12	120536918	120536918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1367775509		P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	274	383	0	ENST00000229340.5:c.268G>A	p.Val90Ile	p.V90I	ENST00000229340	NM_006861.6	90	Gtc/Atc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139404399	139404399	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1478316908		P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	309	486	0	ENST00000277541.6:c.2755G>A	p.Gly919Arg	p.G919R	ENST00000277541	NM_017617.3	919	Ggg/Agg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849920	156849920	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	278	401	1	ENST00000524377.1:c.2176C>T	p.Gln726Ter	p.Q726*	ENST00000524377	NM_002529.3	726	Cag/Tag																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625219	69625219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	223	485	0	ENST00000334134.2:c.574C>T	p.Arg192Trp	p.R192W	ENST00000334134	NM_005247.2	192	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023903	27023904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	241	486	0	ENST00000324856.7:c.1015dup	p.Ala339GlyfsTer61	p.A339Gfs*61	ENST00000324856	NM_006015.4	337	tgg/tGgg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384650	31384651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756395138		P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	41	450	2	ENST00000328111.2:c.1359dup	p.Leu454AlafsTer11	p.L454Afs*11	ENST00000328111	NM_006892.3	451	gag/gaGg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426784	121426784	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765432081		P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	59	492	0	ENST00000257555.6:c.475C>T	p.Arg159Trp	p.R159W	ENST00000257555		159	Cgg/Tgg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753385	42753385	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	38	625	0	ENST00000222329.4:c.879del	p.Ser295AlafsTer16	p.S295Afs*16	ENST00000222329	NM_006494.2	293	ggG/gg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195362	102195362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	38	431	0	ENST00000263464.3:c.122C>T	p.Ala41Val	p.A41V	ENST00000263464	NM_001165.4	41	gCt/gTt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300040	137300040	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	255	374	0	ENST00000481739.1:c.331del	p.Leu111TrpfsTer57	p.L111Wfs*57	ENST00000481739	NM_002957.4	109	Ccc/cc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615794	1615794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	259	439	0	ENST00000344749.5:c.1477G>A	p.Ala493Thr	p.A493T	ENST00000344749	NM_001136139.2	493	Gcc/Acc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716036	52716036	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749905469		P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	54	429	1	ENST00000322088.6:c.601G>A	p.Val201Ile	p.V201I	ENST00000322088	NM_014225.5	201	Gtc/Atc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294123	1294123	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1309920442		P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	255	530	1	ENST00000310581.5:c.878G>A	p.Arg293His	p.R293H	ENST00000310581	NM_198253.2	293	cGc/cAc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609921	117609921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	214	369	0	ENST00000368508.3:c.6778C>T	p.Pro2260Ser	p.P2260S	ENST00000368508	NM_002944.2	2260	Cca/Tca																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048157	180048157	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768465100		P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	30	523	0	ENST00000261937.6:c.2116G>A	p.Ala706Thr	p.A706T	ENST00000261937	NM_182925.4	706	Gcg/Acg																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182665110	182665110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1361986556		P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	195	300	1	ENST00000292782.4:c.616C>T	p.Arg206Ter	p.R206*	ENST00000292782	NM_020640.2	206	Cga/Tga																																																																															
IRF4	3662	MSKCC	GRCh37	6	398831	398831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	278	376	0	ENST00000380956.4:c.641G>A	p.Cys214Tyr	p.C214Y	ENST00000380956	NM_001195286.1	214	tGc/tAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879593	151879594	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC	rs749417254		P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	191	389	0	ENST00000262189.6:c.5349_5351dup	p.Gln1787dup	p.Q1787dup	ENST00000262189	NM_170606.2	1787	caa/caGCAa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302984	15302984	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs745367307		P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	334	508	0	ENST00000263388.2:c.466C>T	p.Arg156Ter	p.R156*	ENST00000263388	NM_000435.2	156	Cga/Tga																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			55	209	372	6	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129596	2129596	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781782		P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	189	491	0	ENST00000219476.3:c.3323C>T	p.Ala1108Val	p.A1108V	ENST00000219476	NM_000548.3	1108	gCg/gTg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434181	12434182	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	204	399	0	ENST00000287820.6:c.556dup	p.Ser186LysfsTer2	p.S186Kfs*2	ENST00000287820	NM_015869.4	183	-/A																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711890	89711890	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	11	277	0	ENST00000371953.3:c.508A>C	p.Ser170Arg	p.S170R	ENST00000371953	NM_000314.4	170	Agt/Cgt																																																																															
EP300	2033	MSKCC	GRCh37	22	41545996	41545996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	347	444	0	ENST00000263253.7:c.2611C>T	p.Pro871Ser	p.P871S	ENST00000263253	NM_001429.3	871	Cct/Tct																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170011170	170011170	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	225	304	0	ENST00000295797.4:c.1292-1G>T		p.X431_splice	ENST00000295797	NM_002740.5	431																																																																																
ANKRD11	29123	MSKCC	GRCh37	16	89348227	89348227	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	17	444	0	ENST00000301030.4:c.4723del	p.Asp1575ThrfsTer4	p.D1575Tfs*4	ENST00000301030	NM_001256183.1	1575	Gac/ac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187525055	187525055	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	239	320	0	ENST00000441802.2:c.10625C>A	p.Pro3542Gln	p.P3542Q	ENST00000441802	NM_005245.3	3542	cCg/cAg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988466	36988466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	216	395	0	ENST00000354822.5:c.187G>A	p.Gly63Ser	p.G63S	ENST00000354822	NM_001079668.2	63	Ggc/Agc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424114	49424114	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	195	354	0	ENST00000301067.7:c.13948del	p.Glu4650SerfsTer16	p.E4650Sfs*16	ENST00000301067	NM_003482.3	4650	Gag/ag																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22127256	22127256	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	261	404	0	ENST00000215832.6:c.872A>T	p.Asp291Val	p.D291V	ENST00000215832	NM_002745.4	291	gAc/gTc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098747	47098747	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	316	511	0	ENST00000409792.3:c.6527A>G	p.Tyr2176Cys	p.Y2176C	ENST00000409792	NM_014159.6	2176	tAt/tGt																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783720	50783720	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	238	367	0	ENST00000398568.2:c.111G>T	p.Lys37Asn	p.K37N	ENST00000398568	NM_001042412.1	37	aaG/aaT																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821410	32821410	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767256206		P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	152	457	0	ENST00000354258.4:c.184G>A	p.Ala62Thr	p.A62T	ENST00000354258	NM_000593.5	62	Gct/Act																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423634	47423634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	191	391	0	ENST00000404338.3:c.1702G>A	p.Ala568Thr	p.A568T	ENST00000404338	NM_004491.4	568	Gct/Act																																																																															
INSR	3643	MSKCC	GRCh37	19	7120703	7120703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	312	447	0	ENST00000302850.5:c.3587G>A	p.Gly1196Asp	p.G1196D	ENST00000302850	NM_000208.2	1196	gGt/gAt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061311	38061311	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	307	468	0	ENST00000250448.2:c.678C>G	p.Asp226Glu	p.D226E	ENST00000250448	NM_004496.3	226	gaC/gaG																																																																															
INSR	3643	MSKCC	GRCh37	19	7117152	7117152	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	277	370	0	ENST00000302850.5:c.4064A>G	p.Tyr1355Cys	p.Y1355C	ENST00000302850	NM_000208.2	1355	tAc/tGc																																																																															
MSI2	124540	MSKCC	GRCh37	17	55752364	55752364	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	136	380	0	ENST00000284073.2:c.826del	p.Ala276ProfsTer24	p.A276Pfs*24	ENST00000284073	NM_138962.2	274	ccG/cc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521499	8521499	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	273	354	0	ENST00000356435.5:c.739A>C	p.Ile247Leu	p.I247L	ENST00000356435		247	Atc/Ctc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423203	47423203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	99	495	0	ENST00000404338.3:c.1271G>A	p.Arg424Lys	p.R424K	ENST00000404338	NM_004491.4	424	aGg/aAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268977	55268977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	244	428	0	ENST00000275493.2:c.3043G>A	p.Glu1015Lys	p.E1015K	ENST00000275493	NM_005228.3	1015	Gag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061205	38061205	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	321	457	0	ENST00000250448.2:c.784del	p.Arg262AlafsTer59	p.R262Afs*59	ENST00000250448	NM_004496.3	262	Cgc/gc																																																																															
IDH1	3417	MSKCC	GRCh37	2	209106718	209106718	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	147	334	0	ENST00000345146.2:c.850G>T	p.Gly284Trp	p.G284W	ENST00000345146	NM_005896.2	284	Ggg/Tgg																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67626330	67626330	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	193	328	0	ENST00000272342.5:c.256del	p.Met86TrpfsTer28	p.M86Wfs*28	ENST00000272342	NM_019002.3	85	Aaa/aa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572288	64572294	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGGGC	CCTGGGC	-			P-0070827-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	116	700	0	ENST00000337652.1:c.1366-6_1366del		p.X456_splice	ENST00000337652	NM_130803.2	456																																																																																
RET	5979	MSKCC	GRCh37	10	43622074	43622074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200989078		P-0038104-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			383	37	386	0	ENST00000355710.3:c.3091G>A	p.Asp1031Asn	p.D1031N	ENST00000355710	NM_020975.4	1031	Gac/Aac																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39609292	39609292	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038104-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			217	12	224	0	ENST00000262039.4:c.1594G>C	p.Asp532His	p.D532H	ENST00000262039	NM_002647.2	532	Gat/Cat																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618492	37618576	+	frameshift_variant	Frame_Shift_Del	DEL	GACCCCCGAAGCAGCATCCCTGGGCACAGTTATCAAACCTTTGGTGGAGTATGATGATATCAGCTCTGATTCCGACACCTTCTCC	GACCCCCGAAGCAGCATCCCTGGGCACAGTTATCAAACCTTTGGTGGAGTATGATGATATCAGCTCTGATTCCGACACCTTCTCC	-			P-0038104-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			497	37	510	1	ENST00000447079.4:c.170_254del	p.Thr57MetfsTer7	p.T57Mfs*7	ENST00000447079	NM_015083.1	56	gtGACCCCCGAAGCAGCATCCCTGGGCACAGTTATCAAACCTTTGGTGGAGTATGATGATATCAGCTCTGATTCCGACACCTTCTCC/gt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37665999	37665999	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs200264056		P-0038104-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			202	23	273	3	ENST00000447079.4:c.2651A>G	p.Tyr884Cys	p.Y884C	ENST00000447079	NM_015083.1	884	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0057656-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			462	97	395	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519963		P-0057656-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			122	20	211	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																															
STK11	6794	MSKCC	GRCh37	19	1207084	1207084	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057656-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			486	74	397	0	ENST00000326873.7:c.172G>C	p.Gly58Arg	p.G58R	ENST00000326873	NM_000455.4	58	Ggc/Cgc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620441	52620441	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0057656-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			274	26	327	1	ENST00000394830.3:c.3312G>T	p.Lys1104Asn	p.K1104N	ENST00000394830	NM_018313.4	1104	aaG/aaT																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939831	71939831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057656-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			580	130	600	1	ENST00000298229.2:c.458C>A	p.Pro153His	p.P153H	ENST00000298229	NM_001567.3	153	cCc/cAc																																																																															
NF2	4771	MSKCC	GRCh37	22	30035078	30035078	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0057656-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			245	27	286	0	ENST00000338641.4:c.241-1G>T		p.X81_splice	ENST00000338641	NM_000268.3	81																																																																																
STK11	6794	MSKCC	GRCh37	19	1207090	1207090	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057656-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			487	76	404	0	ENST00000326873.7:c.178T>G	p.Tyr60Asp	p.Y60D	ENST00000326873	NM_000455.4	60	Tac/Gac																																																																															
APC	324	MSKCC	GRCh37	5	112163692	112163692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057656-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			192	17	234	0	ENST00000257430.4:c.1615G>A	p.Asp539Asn	p.D539N	ENST00000257430	NM_000038.5	539	Gac/Aac																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098909	178098939	+	protein_altering_variant	In_Frame_Del	DEL	ACTCTTTCCGTCGCTGACTGAAGTCAAATAC	ACTCTTTCCGTCGCTGACTGAAGTCAAATAC	T			P-0057656-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			307	40	269	0	ENST00000397062.3:c.106_136delinsA	p.Val36_Tyr46delinsAsn	p.V36_Y46delinsN	ENST00000397062	NM_006164.4	36	GTATTTGACTTCAGTCAGCGACGGAAAGAGTat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0065074-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			318	240	266	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289167	33289167	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371678103		P-0065074-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			765	71	375	0	ENST00000374542.5:c.385G>A	p.Glu129Lys	p.E129K	ENST00000374542	NM_001141970.1	129	Gag/Aag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115416	115115416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065074-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			514	364	300	0	ENST00000257566.3:c.910C>T	p.Arg304Trp	p.R304W	ENST00000257566	NM_016569.3	304	Cgg/Tgg																																																																															
SCG5	6447	MSKCC	GRCh37	15	32976806	32976806	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775294814		P-0065074-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			454	52	253	0	ENST00000300175.4:c.425G>A	p.Arg142Gln	p.R142Q	ENST00000300175	NM_001144757.1	142	cGa/cAa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526650	106526650	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065074-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			453	31	257	0	ENST00000359195.3:c.2943G>C	p.Glu981Asp	p.E981D	ENST00000359195	NM_002649.2	981	gaG/gaC																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231179	98231179	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065074-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			358	170	440	0	ENST00000331920.6:c.2104C>A	p.Pro702Thr	p.P702T	ENST00000331920	NM_000264.3	702	Cca/Aca																																																																															
CDH1	999	MSKCC	GRCh37	16	68867253	68867306	+	inframe_deletion	In_Frame_Del	DEL	GACTATGAAGGAAGCGGTTCCGAAGCTGCTAGTCTGAGCTCCCTGAACTCCTCA	GACTATGAAGGAAGCGGTTCCGAAGCTGCTAGTCTGAGCTCCCTGAACTCCTCA	-			P-0065074-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			129	274	382	0	ENST00000261769.5:c.2502_2555del	p.Asp834_Ser851del	p.D834_S851del	ENST00000261769	NM_004360.3	834	GACTATGAAGGAAGCGGTTCCGAAGCTGCTAGTCTGAGCTCCCTGAACTCCTCA/-																																																																															
ALK	238	MSKCC	GRCh37	2	29456459	29456459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065074-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			350	139	416	0	ENST00000389048.3:c.2459G>A	p.Gly820Glu	p.G820E	ENST00000389048	NM_004304.4	820	gGa/gAa																																																																															
YAP1	10413	MSKCC	GRCh37	11	102056830	102056830	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065074-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			301	68	248	0	ENST00000282441.5:c.770C>G	p.Ser257Cys	p.S257C	ENST00000282441	NM_001130145.2	257	tCt/tGt																																																																															
MET	4233	MSKCC	GRCh37	7	116435997	116435997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065074-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			538	52	361	0	ENST00000397752.3:c.3992C>T	p.Ser1331Phe	p.S1331F	ENST00000397752	NM_000245.2	1331	tCt/tTt																																																																															
CTR9	9646	MSKCC	GRCh37	11	10777279	10777279	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065074-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			597	59	244	0	ENST00000361367.2:c.439C>G	p.Gln147Glu	p.Q147E	ENST00000361367	NM_014633.3	147	Caa/Gaa																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204956	128204956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065074-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			539	53	403	0	ENST00000341105.2:c.485C>T	p.Thr162Ile	p.T162I	ENST00000341105	NM_032638.4	162	aCa/aTa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39576686	39576686	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065074-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	30	194	0	ENST00000262039.4:c.976C>G	p.Gln326Glu	p.Q326E	ENST00000262039	NM_002647.2	326	Caa/Gaa																																																																															
CCND3	896	MSKCC	GRCh37	6	41908250	41908250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065074-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			584	62	348	0	ENST00000372991.4:c.272G>T	p.Cys91Phe	p.C91F	ENST00000372991	NM_001760.3	91	tGc/tTc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9543575	9543575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065074-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			414	31	287	0	ENST00000353224.5:c.1579G>A	p.Glu527Lys	p.E527K	ENST00000353224	NM_177990.2	527	Gaa/Aaa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164739	47164739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065074-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			612	72	342	0	ENST00000409792.3:c.1387G>A	p.Glu463Lys	p.E463K	ENST00000409792	NM_014159.6	463	Gaa/Aaa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89818617	89818617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065074-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			208	180	307	0	ENST00000389301.3:c.2995G>A	p.Asp999Asn	p.D999N	ENST00000389301	NM_000135.2	999	Gac/Aac																																																																															
ATRX	546	MSKCC	GRCh37	X	76920215	76920215	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781807770		P-0065074-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			450	39	265	0	ENST00000373344.5:c.3862G>A	p.Glu1288Lys	p.E1288K	ENST00000373344	NM_000489.3	1288	Gag/Aag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164165	47164165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065074-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			550	55	297	0	ENST00000409792.3:c.1961C>T	p.Ser654Phe	p.S654F	ENST00000409792	NM_014159.6	654	tCt/tTt																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724316	112724316	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0065074-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			490	218	373	0	ENST00000369452.4:c.200C>G	p.Ser67Ter	p.S67*	ENST00000369452	NM_007373.3	67	tCa/tGa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521088	187521088	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0065381-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	228	489	0	ENST00000441802.2:c.12067C>T	p.Gln4023Ter	p.Q4023*	ENST00000441802	NM_005245.3	4023	Cag/Tag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9927978	9927978	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065381-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	20	363	0	ENST00000330684.3:c.1761C>A	p.Asn587Lys	p.N587K	ENST00000330684	NM_001134407.1	587	aaC/aaA																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942034	81942034	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065381-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	175	399	0	ENST00000359376.3:c.1571C>A	p.Thr524Lys	p.T524K	ENST00000359376	NM_002661.3	524	aCa/aAa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26101078	26101078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065381-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	191	375	0	ENST00000435504.4:c.14G>A	p.Gly5Glu	p.G5E	ENST00000435504		5	gGa/gAa																																																																															
ATR	545	MSKCC	GRCh37	3	142226910	142226910	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065381-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	126	381	0	ENST00000350721.4:c.4894T>A	p.Phe1632Ile	p.F1632I	ENST00000350721	NM_001184.3	1632	Ttt/Att																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998971	169998971	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065381-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	77	281	0	ENST00000295797.4:c.900G>C	p.Gln300His	p.Q300H	ENST00000295797	NM_002740.5	300	caG/caC																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146485	185146485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065381-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	366	456	0	ENST00000265026.3:c.116C>T	p.Ser39Phe	p.S39F	ENST00000265026	NM_004721.4	39	tCt/tTt																																																																															
REST	5978	MSKCC	GRCh37	4	57798017	57798017	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065381-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	236	443	0	ENST00000309042.7:c.2993C>G	p.Ala998Gly	p.A998G	ENST00000309042	NM_005612.4	998	gCa/gGa																																																																															
APC	324	MSKCC	GRCh37	5	112176022	112176037	+	frameshift_variant	Frame_Shift_Del	DEL	ATGTATTATTTCTGCC	ATGTATTATTTCTGCC	-			P-0065381-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	165	495	0	ENST00000257430.4:c.4734_4749del	p.Ile1579GlnfsTer66	p.I1579Qfs*66	ENST00000257430	NM_000038.5	1577	gaATGTATTATTTCTGCC/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579386	7579388	+	frameshift_variant	Frame_Shift_Del	DEL	TCT	TCT	G			P-0065381-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	298	537	0	ENST00000269305.4:c.299_301delinsC	p.Gln100ProfsTer48	p.Q100Pfs*48	ENST00000269305	NM_001126112.2	100	cAGAaa/cCaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0065582-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	90	561	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717737	89717739	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0065582-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	22	403	0	ENST00000371953.3:c.764_766del	p.Val255del	p.V255del	ENST00000371953	NM_000314.4	254	aaAGTa/aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0067074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	21	283	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0067074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	30	355	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951964	178951964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	377	692	0	ENST00000263967.3:c.3019G>C	p.Gly1007Arg	p.G1007R	ENST00000263967	NM_006218.2	1007	Ggc/Cgc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374283	118374309	+	inframe_deletion	In_Frame_Del	DEL	CAGAACCAATTTCAGCCTCTGAAAATC	CAGAACCAATTTCAGCCTCTGAAAATC	-			P-0067224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			814	131	711	0	ENST00000534358.1:c.7679_7705del	p.Glu2560_Pro2568del	p.E2560_P2568del	ENST00000534358	NM_005933.3	2559	aCAGAACCAATTTCAGCCTCTGAAAATCca/aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579475	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGG	GGGGG	-			P-0067224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	182	802	0	ENST00000269305.4:c.212_216del	p.Pro71ArgfsTer76	p.P71Rfs*76	ENST00000269305	NM_001126112.2	71	cCCCCC/c																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T	rs730881673		P-0067431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	89	490	0	ENST00000304494.5:c.131dup	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0067431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	54	291	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123353313	123353313	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	34	474	0	ENST00000358487.5:c.19T>G	p.Phe7Val	p.F7V	ENST00000358487	NM_000141.4	7	Ttc/Gtc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519841		P-0067524-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	15	337	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922973	44922973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067524-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	65	341	0	ENST00000377967.4:c.1834C>T	p.Arg612Ter	p.R612*	ENST00000377967	NM_021140.2	612	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0067524-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	249	483	0	ENST00000269305.4:c.538G>T	p.Glu180Ter	p.E180*	ENST00000269305	NM_001126112.2	180	Gag/Tag																																																																															
STAG2	10735	MSKCC	GRCh37	X	123182879	123182879	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0067524-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			73	11	198	0	ENST00000218089.9:c.844G>T	p.Glu282Ter	p.E282*	ENST00000218089	NM_001042749.1	282	Gaa/Taa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123182922	123182922	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067524-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			72	15	201	0	ENST00000218089.9:c.887G>C	p.Arg296Thr	p.R296T	ENST00000218089	NM_001042749.1	296	aGa/aCa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123182870	123182870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067524-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			79	8	0	0	ENST00000218089.9:c.835G>A	p.Asp279Asn	p.D279N	ENST00000218089	NM_001042749.1	279	Gat/Aat																																																																															
STAG2	10735	MSKCC	GRCh37	X	123181273	123181273	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067524-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			83	6	0	0	ENST00000218089.9:c.737G>C	p.Arg246Thr	p.R246T	ENST00000218089	NM_001042749.1	246	aGa/aCa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913558	32913559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1265028174		P-0067529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	101	551	0	ENST00000380152.3:c.5073dup	p.Trp1692MetfsTer3	p.W1692Mfs*3	ENST00000380152		1689	gca/gcAa																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128268649	128268655	+	frameshift_variant	Frame_Shift_Del	DEL	CAACGGC	CAACGGC	-			P-0067529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	92	527	0	ENST00000265960.3:c.1000_1006del	p.Ala334ThrfsTer36	p.A334Tfs*36	ENST00000265960	NM_001006617.1	334	GCCGTTGac/ac																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40359748	40359748	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0067529-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	86	416	0	ENST00000293328.3:c.1907-2A>T		p.X636_splice	ENST00000293328	NM_012448.3	636																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0067621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	31	387	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435784	56435784	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0067621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	56	555	0	ENST00000407977.2:c.1353C>A	p.Cys451Ter	p.C451*	ENST00000407977		451	tgC/tgA																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279669	123279669	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	38	521	0	ENST00000358487.5:c.763C>G	p.Arg255Gly	p.R255G	ENST00000358487	NM_000141.4	255	Cgg/Ggg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349583	15349583	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1327568069		P-0067621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	34	491	0	ENST00000263377.2:c.3991C>T	p.Arg1331Trp	p.R1331W	ENST00000263377	NM_058243.2	1331	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0067667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	84	325	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141557676	141557676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	78	459	0	ENST00000220592.5:c.1639G>A	p.Val547Met	p.V547M	ENST00000220592	NM_012154.3	547	Gtg/Atg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974680	21974681	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATCGGCCTCCGACCGTAACTATTCGGT			P-0067667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	34	402	0	ENST00000304494.5:c.120_146dup	p.Pro41_Ile49dup	p.P41_I49dup	ENST00000304494	NM_000077.4	41	atc/atACCGAATAGTTACGGTCGGAGGCCGATc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013743	12013744	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CC			P-0067667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	72	318	0	ENST00000353533.5:c.685_685+1insCC	p.Asp229AlafsTer48	p.D229Afs*48	ENST00000353533	NM_003010.3	229	gat/gCCat																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729985	30729986	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0067667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	120	357	0	ENST00000359013.4:c.1583dup	p.Trp529LeufsTer12	p.W529Lfs*12	ENST00000359013	NM_001024847.2	527	-/T																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0067670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	189	297	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																															
XPO1	7514	MSKCC	GRCh37	2	61711074	61711074	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs755621083		P-0067670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			55	11	320	2	ENST00000401558.2:c.2675C>T	p.Thr892Met	p.T892M	ENST00000401558	NM_003400.3	892	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821638	72821638	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200561133		P-0067670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	19	258	2	ENST00000268489.5:c.10537A>G	p.Ser3513Gly	p.S3513G	ENST00000268489	NM_006885.3	3513	Agt/Ggt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829938	72829938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	45	338	0	ENST00000268489.5:c.6643C>T	p.Pro2215Ser	p.P2215S	ENST00000268489	NM_006885.3	2215	Cct/Tct																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149243805	149243805	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	26	275	0	ENST00000360632.3:c.1013A>G	p.Asp338Gly	p.D338G	ENST00000360632	NM_015472.4	338	gAt/gGt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40709526	40709526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	23	253	0	ENST00000373198.4:c.4376C>A	p.Ser1459Tyr	p.S1459Y	ENST00000373198	NM_133170.3	1459	tCc/tAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89371683	89371683	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	80	425	0	ENST00000301030.4:c.157G>C	p.Glu53Gln	p.E53Q	ENST00000301030	NM_001256183.1	53	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0067694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	153	361	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913385		P-0067694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	211	397	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156834187	156834187	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs79678945		P-0067694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	146	350	2	ENST00000524377.1:c.254G>A	p.Arg85His	p.R85H	ENST00000524377	NM_002529.3	85	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0067694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	151	229	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RET	5979	MSKCC	GRCh37	10	43615024	43615024	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1318733775		P-0067694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	119	438	0	ENST00000355710.3:c.2438G>A	p.Arg813Gln	p.R813Q	ENST00000355710	NM_020975.4	813	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49442999	49443003	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	ACCCT	ACCCT	-			P-0067694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	143	365	0	ENST00000301067.7:c.3907-2_3909del		p.X1303_splice	ENST00000301067	NM_003482.3	1303																																																																																
JAK1	3716	MSKCC	GRCh37	1	65309887	65309887	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1304838920		P-0067790-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			194	21	367	0	ENST00000342505.4:c.2263C>T	p.Arg755Ter	p.R755*	ENST00000342505	NM_002227.2	755	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0067790-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			199	186	260	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0067790-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			96	155	491	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44970652	44970664	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	CTTGATATTGTTC	CTTGATATTGTTC	-			P-0067790-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			34	103	105	0	ENST00000377967.4:c.4203_*9del		p.*1401*	ENST00000377967	NM_021140.2	1401																																																																																
TP53	7157	MSKCC	GRCh37	17	7577070	7577070	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067869-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	119	549	0	ENST00000269305.4:c.868del	p.Arg290AlafsTer55	p.R290Afs*55	ENST00000269305	NM_001126112.2	290	Cgc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0067872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	59	462	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437520	110437520	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	53	611	0	ENST00000375856.3:c.881T>G	p.Leu294Arg	p.L294R	ENST00000375856	NM_003749.2	294	cTc/cGc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0067873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	25	584	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986739	36986740	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0067873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	24	583	0	ENST00000354822.5:c.949dup	p.Gln317ProfsTer122	p.Q317Pfs*122	ENST00000354822	NM_001079668.2	317	cag/cCag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0067873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	15	415	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987182	36987183	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0067873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	27	615	1	ENST00000354822.5:c.506dup	p.Met170HisfsTer269	p.M170Hfs*269	ENST00000354822	NM_001079668.2	169	ggc/ggGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0067958-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	175	433	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0067958-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	286	406	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618388	37618388	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067958-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			786	216	477	0	ENST00000447079.4:c.64C>T	p.Gln22Ter	p.Q22*	ENST00000447079	NM_015083.1	22	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119803	70119803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067958-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	345	472	0	ENST00000245479.2:c.805G>A	p.Asp269Asn	p.D269N	ENST00000245479	NM_000346.3	269	Gac/Aac																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38148037	38148037	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067958-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	12763	415	1	ENST00000317025.8:c.3074G>C	p.Ser1025Thr	p.S1025T	ENST00000317025	NM_023034.1	1025	aGc/aCc																																																																															
CBL	867	MSKCC	GRCh37	11	119145599	119145599	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs372452974		P-0067958-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	254	477	0	ENST00000264033.4:c.805A>G	p.Met269Val	p.M269V	ENST00000264033	NM_005188.3	269	Atg/Gtg																																																																															
HGF	3082	MSKCC	GRCh37	7	81381572	81381572	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067958-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	91	367	0	ENST00000222390.5:c.489G>T	p.Leu163Phe	p.L163F	ENST00000222390	NM_000601.4	163	ttG/ttT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877008	151877008	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067958-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	164	468	0	ENST00000262189.6:c.7353A>C	p.Leu2451Phe	p.L2451F	ENST00000262189	NM_170606.2	2451	ttA/ttC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0068200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	84	279	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0068200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	96	345	0	ENST00000346208.3:c.1220dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118363799	118363799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	172	278	0	ENST00000534358.1:c.5032G>A	p.Glu1678Lys	p.E1678K	ENST00000534358	NM_005933.3	1678	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433689	49433689	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760968358		P-0068206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	169	385	0	ENST00000301067.7:c.7864G>A	p.Asp2622Asn	p.D2622N	ENST00000301067	NM_003482.3	2622	Gac/Aac																																																																															
MGA	23269	MSKCC	GRCh37	15	42026732	42026732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	141	283	0	ENST00000219905.7:c.3856G>A	p.Glu1286Lys	p.E1286K	ENST00000219905	NM_001164273.1	1286	Gaa/Aaa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3801767	3801767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			950	171	304	0	ENST00000262367.5:c.3739G>A	p.Glu1247Lys	p.E1247K	ENST00000262367	NM_004380.2	1247	Gag/Aag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820624	3820624	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			912	145	306	0	ENST00000262367.5:c.2827C>T	p.Gln943Ter	p.Q943*	ENST00000262367	NM_004380.2	943	Cag/Tag																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0068206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	264	193	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																																
MYCN	4613	MSKCC	GRCh37	2	16085871	16085871	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	125	283	0	ENST00000281043.3:c.1047G>T	p.Lys349Asn	p.K349N	ENST00000281043	NM_005378.4	349	aaG/aaT																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206718	36206719	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0068206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	166	370	0	ENST00000300305.3:c.793_794del	p.Gln266AspfsTer333	p.Q266Dfs*333	ENST00000300305		265	AGt/t																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0068206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	92	177	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541229	187541229	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			733	167	352	0	ENST00000441802.2:c.6511C>G	p.Pro2171Ala	p.P2171A	ENST00000441802	NM_005245.3	2171	Ccg/Gcg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528730	8528730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			802	145	295	0	ENST00000356435.5:c.402G>T	p.Leu134Phe	p.L134F	ENST00000356435		134	ttG/ttT																																																																															
AR	367	MSKCC	GRCh37	X	66863238	66863238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	127	296	0	ENST00000374690.3:c.1757G>A	p.Arg586Lys	p.R586K	ENST00000374690	NM_000044.3	586	aGa/aAa																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874563	155874563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			953	134	278	0	ENST00000368323.3:c.196G>T	p.Asp66Tyr	p.D66Y	ENST00000368323	NM_006912.5	66	Gat/Tat																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246493823	246493823	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	97	216	0	ENST00000388985.4:c.353C>A	p.Ser118Ter	p.S118*	ENST00000388985		118	tCa/tAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906865	32906865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	142	327	0	ENST00000380152.3:c.1250C>A	p.Ser417Tyr	p.S417Y	ENST00000380152		417	tCt/tAt																																																																															
CDH1	999	MSKCC	GRCh37	16	68863558	68863558	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0068206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	292	267	0	ENST00000261769.5:c.2297del	p.Asp766AlafsTer4	p.D766Afs*4	ENST00000261769	NM_004360.3	766	gAc/gc																																																																															
NF1	4763	MSKCC	GRCh37	17	29585447	29585447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	136	240	0	ENST00000358273.4:c.4259C>T	p.Ser1420Leu	p.S1420L	ENST00000358273	NM_001042492.2	1420	tCa/tTa																																																																															
SDHA	6389	MSKCC	GRCh37	5	225578	225578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	90	174	0	ENST00000264932.6:c.357G>T	p.Trp119Cys	p.W119C	ENST00000264932	NM_004168.2	119	tgG/tgT																																																																															
PMS2	5395	MSKCC	GRCh37	7	6027020	6027020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	135	217	0	ENST00000265849.7:c.1376C>T	p.Ser459Leu	p.S459L	ENST00000265849	NM_000535.5	459	tCa/tTa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6027029	6027029	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	134	218	0	ENST00000265849.7:c.1367C>G	p.Ser456Cys	p.S456C	ENST00000265849	NM_000535.5	456	tCt/tGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859450	151859450	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757552168		P-0068206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	183	357	0	ENST00000262189.6:c.11212G>A	p.Glu3738Lys	p.E3738K	ENST00000262189	NM_170606.2	3738	Gaa/Aaa																																																																															
BTK	695	MSKCC	GRCh37	X	100630177	100630177	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	131	262	0	ENST00000308731.7:c.96G>C	p.Leu32Phe	p.L32F	ENST00000308731	NM_000061.2	32	ttG/ttC																																																																															
RIT1	6016	MSKCC	GRCh37	1	155870287	155870288	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	A			P-0068206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1131	184	329	0	ENST00000368323.3:c.551_552delinsT	p.Arg184IlefsTer24	p.R184Ifs*24	ENST00000368323	NM_006912.5	184	aGG/aT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578470	7578482	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGCGGGGGTGT	CGGGCGGGGGTGT	-	rs1064792930		P-0068265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	287	503	0	ENST00000269305.4:c.448_460del	p.Thr150AlafsTer16	p.T150Afs*16	ENST00000269305	NM_001126112.2	150	ACACCCCCGCCCGgc/gc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066823	30066823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	66	371	0	ENST00000331968.5:c.2308G>T	p.Gly770Trp	p.G770W	ENST00000331968	NM_002742.2	770	Ggg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579323	7579324	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0068349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	126	423	0	ENST00000269305.4:c.363dup	p.Val122CysfsTer27	p.V122Cfs*27	ENST00000269305	NM_001126112.2	121	-/T																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221481	36221481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	90	508	0	ENST00000222270.7:c.5240C>T	p.Ser1747Leu	p.S1747L	ENST00000222270	NM_014727.1	1747	tCg/tTg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096282	178096282	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs747985195		P-0068349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	87	513	0	ENST00000397062.3:c.1049C>G	p.Thr350Arg	p.T350R	ENST00000397062	NM_006164.4	350	aCa/aGa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31372571	31372571	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	52	346	0	ENST00000328111.2:c.212C>G	p.Thr71Arg	p.T71R	ENST00000328111	NM_006892.3	71	aCa/aGa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163921	152163921	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0068349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	55	325	0	ENST00000206249.3:c.642A>C	p.Gln214His	p.Q214H	ENST00000206249	NM_000125.3	214	caA/caC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0068355-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	91	315	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2116002	2116002	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs281875238		P-0068355-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	125	388	0	ENST00000349721.2:c.3637C>T	p.Arg1213Trp	p.R1213W	ENST00000349721	NM_003070.3	1213	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604762	48604763	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0068355-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	87	415	0	ENST00000342988.3:c.1586dup	p.Leu529PhefsTer48	p.L529Ffs*48	ENST00000342988	NM_005359.5	528	-/T																																																																															
MED12	9968	MSKCC	GRCh37	X	70348217	70348217	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068355-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	112	372	0	ENST00000374080.3:c.3281G>T	p.Gly1094Val	p.G1094V	ENST00000374080		1094	gGa/gTa																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012441	29012442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068355-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	114	342	0	ENST00000282397.4:c.429dup	p.Glu144ArgfsTer7	p.E144Rfs*7	ENST00000282397	NM_002019.4	143	-/C																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241678	55241678	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517085		P-0068355-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	116	435	0	ENST00000275493.2:c.2126A>G	p.Glu709Gly	p.E709G	ENST00000275493	NM_005228.3	709	gAa/gGa																																																																															
TP63	8626	MSKCC	GRCh37	3	189612231	189612231	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068355-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	121	404	0	ENST00000264731.3:c.1983C>G	p.Phe661Leu	p.F661L	ENST00000264731	NM_003722.4	661	ttC/ttG																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639957	3639957	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068355-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	79	420	0	ENST00000294008.3:c.3682T>G	p.Ser1228Ala	p.S1228A	ENST00000294008	NM_032444.2	1228	Tct/Gct																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981659	70981659	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068355-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	94	421	0	ENST00000276594.2:c.437C>G	p.Pro146Arg	p.P146R	ENST00000276594	NM_024504.3	146	cCt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0068356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	12	261	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988400	36988400	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	26	412	0	ENST00000354822.5:c.253C>T	p.Gln85Ter	p.Q85*	ENST00000354822	NM_001079668.2	85	Cag/Tag																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988254	36988254	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	21	430	0	ENST00000354822.5:c.399del	p.Met134Ter	p.M134*	ENST00000354822	NM_001079668.2	133	acC/ac																																																																															
SMO	6608	MSKCC	GRCh37	7	128849139	128849139	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068356-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	32	417	0	ENST00000249373.3:c.1367G>T	p.Gly456Val	p.G456V	ENST00000249373	NM_005631.4	456	gGc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0068429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	389	272	1	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578349	7578614	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAAGCAA	CTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAAGCAA	-			P-0068429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	184	462	0	ENST00000269305.4:c.376-60_559+22del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48573570	48573570	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	212	413	0	ENST00000342988.3:c.154G>C	p.Asp52His	p.D52H	ENST00000342988	NM_005359.5	52	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs1057517840		P-0068434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	96	527	0	ENST00000269305.4:c.626_627del	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0068434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	93	521	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																															
BARD1	580	MSKCC	GRCh37	2	215610579	215610579	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0068434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	49	362	0	ENST00000260947.4:c.1678-1G>C		p.X560_splice	ENST00000260947	NM_000465.2	560																																																																																
MET	4233	MSKCC	GRCh37	7	116417446	116417446	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	CT			P-0068434-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	24	359	0	ENST00000397752.3:c.3263delinsCT	p.His1088ProfsTer14	p.H1088Pfs*14	ENST00000397752	NM_000245.2	1088	cAt/cCTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0068618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	154	111	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	44	265	0	ENST00000269305.4:c.389T>A	p.Leu130His	p.L130H	ENST00000269305	NM_001126112.2	130	cTc/cAc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011144	12011144	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	58	166	0	ENST00000353533.5:c.551C>A	p.Ser184Ter	p.S184*	ENST00000353533	NM_003010.3	184	tCg/tAg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217855	7217858	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	-			P-0068618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	97	247	0	ENST00000380728.2:c.153_156del	p.Lys53ArgfsTer9	p.K53Rfs*9	ENST00000380728		51	agGAAG/ag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177987	56177988	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0068618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	30	281	0	ENST00000399503.3:c.2961_2962dup	p.Ser988PhefsTer95	p.S988Ffs*95	ENST00000399503	NM_005921.1	987	tct/tcTTt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637666	52637666	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	22	193	0	ENST00000394830.3:c.2650G>C	p.Glu884Gln	p.E884Q	ENST00000394830	NM_018313.4	884	Gag/Cag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67650777	67650777	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	91	216	0	ENST00000264010.4:c.1082del	p.Val361GlufsTer6	p.V361Efs*6	ENST00000264010	NM_006565.3	361	gTa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578487	+	frameshift_variant	Frame_Shift_Del	DEL	CCGGGCGGGGGTGTGGAAT	CCGGGCGGGGGTGTGGAAT	-			P-0068618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	132	317	0	ENST00000269305.4:c.443_461del	p.Asp148AlafsTer16	p.D148Afs*16	ENST00000269305	NM_001126112.2	148	gATTCCACACCCCCGCCCGGc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579392	7579392	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	130	778	1	ENST00000269305.4:c.295del	p.Ser99ProfsTer24	p.S99Pfs*24	ENST00000269305	NM_001126112.2	99	Tcc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0068655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	39	403	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986643	36986644	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	49	573	0	ENST00000354822.5:c.1045dup	p.His349ProfsTer90	p.H349Pfs*90	ENST00000354822	NM_001079668.2	349	cac/cCac																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56488204	56488204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	85	582	0	ENST00000267101.3:c.1723C>T	p.Gln575Ter	p.Q575*	ENST00000267101	NM_001982.3	575	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519989		P-0068759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	416	317	0	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424728	49424728	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781213309		P-0068759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			826	162	406	0	ENST00000301067.7:c.13619G>A	p.Arg4540Gln	p.R4540Q	ENST00000301067	NM_003482.3	4540	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0068759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	205	263	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ATR	545	MSKCC	GRCh37	3	142183948	142183948	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	46	256	0	ENST00000350721.4:c.7032G>C	p.Leu2344Phe	p.L2344F	ENST00000350721	NM_001184.3	2344	ttG/ttC																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518107	8518107	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1235655964		P-0068759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	245	357	0	ENST00000356435.5:c.1284G>T	p.Met428Ile	p.M428I	ENST00000356435		428	atG/atT																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472544	88472544	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	90	446	0	ENST00000360948.2:c.2011G>T	p.Ala671Ser	p.A671S	ENST00000360948	NM_001012338.2	671	Gcc/Tcc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118352661	118352661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	345	453	0	ENST00000534358.1:c.3866C>T	p.Pro1289Leu	p.P1289L	ENST00000534358	NM_005933.3	1289	cCa/cTa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112370	115112370	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	69	381	0	ENST00000257566.3:c.1370C>A	p.Pro457Gln	p.P457Q	ENST00000257566	NM_016569.3	457	cCg/cAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831042	72831042	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068817-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			71	10	480	0	ENST00000268489.5:c.5539C>T	p.Gln1847Ter	p.Q1847*	ENST00000268489	NM_006885.3	1847	Cag/Tag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44920568	44920568	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0068817-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			50	50	104	0	ENST00000377967.4:c.1330-1G>A		p.X444_splice	ENST00000377967	NM_021140.2	444																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72830006	72830006	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068817-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			52	15	430	0	ENST00000268489.5:c.6575G>A	p.Trp2192Ter	p.W2192*	ENST00000268489	NM_006885.3	2192	tGg/tAg																																																																															
AKT2	208	MSKCC	GRCh37	19	40742201	40742201	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068817-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	12	410	0	ENST00000392038.2:c.923A>G	p.Lys308Arg	p.K308R	ENST00000392038	NM_001626.4	308	aAa/aGa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061000	38061001	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGCGGGCCCGGGGGC			P-0068817-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	10	464	0	ENST00000250448.2:c.973_988dup	p.Ala330GlyfsTer90	p.A330Gfs*90	ENST00000250448	NM_004496.3	330	gcc/gGCCCCCGGGCCCGCCGcc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023013	31023013	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	206	450	0	ENST00000375687.4:c.2498G>C	p.Ser833Thr	p.S833T	ENST00000375687	NM_015338.5	833	aGt/aCt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65303653	65303653	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0068820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	184	381	0	ENST00000342505.4:c.3102T>G	p.Tyr1034Ter	p.Y1034*	ENST00000342505	NM_002227.2	1034	taT/taG																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088807	27088807	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	82	276	0	ENST00000324856.7:c.2416C>T	p.Gln806Ter	p.Q806*	ENST00000324856	NM_006015.4	806	Caa/Taa																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19261496	19261496	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763146191		P-0068841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	78	215	0	ENST00000162023.5:c.49C>T	p.Arg17Trp	p.R17W	ENST00000162023		17	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0068841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	204	376	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
ATRX	546	MSKCC	GRCh37	X	76814253	76814253	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	70	230	0	ENST00000373344.5:c.6391C>T	p.Arg2131Ter	p.R2131*	ENST00000373344	NM_000489.3	2131	Cga/Tga																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156535	55156535	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587778598		P-0068841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	77	287	0	ENST00000257290.5:c.2936G>A	p.Arg979His	p.R979H	ENST00000257290	NM_006206.4	979	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692794	89692794	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121909238		P-0068841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	44	145	0	ENST00000371953.3:c.278A>G	p.His93Arg	p.H93R	ENST00000371953	NM_000314.4	93	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112174058	112174058	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0068841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	90	279	0	ENST00000257430.4:c.2767A>T	p.Arg923Ter	p.R923*	ENST00000257430	NM_000038.5	923	Aga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175765	112175765	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691144		P-0068841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	62	359	0	ENST00000257430.4:c.4474del	p.Ala1492ProfsTer15	p.A1492Pfs*15	ENST00000257430	NM_000038.5	1492	Gcc/cc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129256	152129256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	114	344	0	ENST00000206249.3:c.209C>T	p.Ala70Val	p.A70V	ENST00000206249	NM_000125.3	70	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380309	25380309	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1407509439		P-0068841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	55	209	0	ENST00000256078.4:c.149C>T	p.Thr50Ile	p.T50I	ENST00000256078	NM_033360.2	50	aCc/aTc																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61305309	61305309	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs375178513		P-0068841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			48	16	71	0	ENST00000341074.5:c.817C>A	p.Gln273Lys	p.Q273K	ENST00000341074	NM_002974.2	273	Cag/Aag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117759	70117760	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGTCAG			P-0068841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	84	414	0	ENST00000245479.2:c.228_233dup	p.Val77_Ser78insArgVal	p.V77_S78insRV	ENST00000245479	NM_000346.3	76	gcg/gcGGTCAGg																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29207387	29207387	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs918359336		P-0068841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	71	242	0	ENST00000240100.2:c.409C>T	p.Arg137Cys	p.R137C	ENST00000240100	NM_001394.6	137	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378557	25378557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	79	212	0	ENST00000256078.4:c.441G>T	p.Lys147Asn	p.K147N	ENST00000256078	NM_033360.2	147	aaG/aaT																																																																															
APC	324	MSKCC	GRCh37	5	112174261	112174261	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1397548815		P-0068841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	68	316	0	ENST00000257430.4:c.2970T>G	p.Asp990Glu	p.D990E	ENST00000257430	NM_000038.5	990	gaT/gaG																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119727	70119743	+	frameshift_variant	Frame_Shift_Del	DEL	CGACGTGCAGCCGGGCA	CGACGTGCAGCCGGGCA	-			P-0068841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	54	194	1	ENST00000245479.2:c.729_745del	p.Asp244GlyfsTer2	p.D244Gfs*2	ENST00000245479	NM_000346.3	243	acCGACGTGCAGCCGGGCAag/acag																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288570	33288570	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1310479893		P-0068841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	79	328	0	ENST00000374542.5:c.982C>T	p.Arg328Cys	p.R328C	ENST00000374542	NM_001141970.1	328	Cgt/Tgt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914523	32914523	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	108	314	0	ENST00000380152.3:c.6031T>G	p.Phe2011Val	p.F2011V	ENST00000380152		2011	Ttt/Gtt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916920	178916926	+	protein_altering_variant	In_Frame_Del	DEL	GAACCAG	GAACCAG	A			P-0068841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	147	248	0	ENST00000263967.3:c.307_313delinsA	p.Glu103_Val105delinsIle	p.E103_V105delinsI	ENST00000263967	NM_006218.2	103	GAACCAGta/Ata																																																																															
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	228	549	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111455	8111455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	144	472	0	ENST00000346208.3:c.941G>T	p.Gly314Val	p.G314V	ENST00000346208		314	gGg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0068843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	229	325	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081696	143081696	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	180	335	0	ENST00000262992.4:c.1378G>T	p.Ala460Ser	p.A460S	ENST00000262992	NM_001101669.1	460	Gcc/Tcc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980866	40980866	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	140	468	0	ENST00000373198.4:c.1620del	p.Val542CysfsTer59	p.V542Cfs*59	ENST00000373198	NM_133170.3	540	ggG/gg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115957	8115957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	268	540	0	ENST00000346208.3:c.1303C>T	p.Pro435Ser	p.P435S	ENST00000346208		435	Ccc/Tcc																																																																															
STK11	6794	MSKCC	GRCh37	19	1218431	1218432	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGAGGT			P-0068843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	256	470	0	ENST00000326873.7:c.307_313dup	p.Leu105Ter	p.L105*	ENST00000326873	NM_000455.4	102	-/AGGAGGT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965714	93965714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	49	399	0	ENST00000369303.4:c.2214G>A	p.Met738Ile	p.M738I	ENST00000369303	NM_004440.3	738	atG/atA																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066684	94066684	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	71	443	0	ENST00000369303.4:c.1075G>T	p.Gly359Ter	p.G359*	ENST00000369303	NM_004440.3	359	Gga/Tga																																																																															
HGF	3082	MSKCC	GRCh37	7	81359022	81359022	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			709	157	400	0	ENST00000222390.5:c.939C>A	p.Tyr313Ter	p.Y313*	ENST00000222390	NM_000601.4	313	taC/taA																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40375482	40375482	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	270	535	0	ENST00000293328.3:c.468G>T	p.Gln156His	p.Q156H	ENST00000293328	NM_012448.3	156	caG/caT																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149452881	149452882	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0068843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	98	511	0	ENST00000286301.3:c.1064_1065del	p.Thr355AsnfsTer20	p.T355Nfs*20	ENST00000286301	NM_005211.3	355	aCC/a																																																																															
BRCA1	672	MSKCC	GRCh37	17	41249289	41249289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	157	317	0	ENST00000357654.3:c.565G>T	p.Asp189Tyr	p.D189Y	ENST00000357654	NM_007294.3	189	Gat/Tat																																																																															
MSH6	2956	MSKCC	GRCh37	2	48018166	48018166	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763593669		P-0068843-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	292	464	0	ENST00000234420.5:c.361C>T	p.Arg121Cys	p.R121C	ENST00000234420	NM_000179.2	121	Cgc/Tgc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0068844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	87	279	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911069	29911069	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1136697		P-0068844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	94	497	0	ENST00000376809.5:c.368A>G	p.Tyr123Cys	p.Y123C	ENST00000376809	NM_002116.7	123	tAt/tGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55228014	55228014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	73	303	0	ENST00000275493.2:c.1481G>T	p.Arg494Ile	p.R494I	ENST00000275493	NM_005228.3	494	aGa/aTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0068844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	54	235	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112179518	112179518	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	96	346	0	ENST00000257430.4:c.8227A>T	p.Asn2743Tyr	p.N2743Y	ENST00000257430	NM_000038.5	2743	Aat/Tat																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670678	134670678	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	100	405	0	ENST00000398015.3:c.589C>G	p.Pro197Ala	p.P197A	ENST00000398015	NM_004441.4	197	Ccc/Gcc																																																																															
ATM	472	MSKCC	GRCh37	11	108198477	108198477	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1412288141		P-0068844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	49	252	0	ENST00000278616.4:c.7081C>G	p.Leu2361Val	p.L2361V	ENST00000278616	NM_000051.3	2361	Cta/Gta																																																																															
APC	324	MSKCC	GRCh37	5	112090618	112090618	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0068844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	53	214	0	ENST00000257430.4:c.31A>T	p.Lys11Ter	p.K11*	ENST00000257430	NM_000038.5	11	Aag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992015	72992015	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs767943550		P-0068844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	119	458	0	ENST00000268489.5:c.2030A>G	p.Asn677Ser	p.N677S	ENST00000268489	NM_006885.3	677	aAc/aGc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11273523	11273523	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1027224801		P-0068844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	86	366	0	ENST00000361445.4:c.3218A>T	p.Gln1073Leu	p.Q1073L	ENST00000361445	NM_004958.3	1073	cAg/cTg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038894	12038894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	85	313	0	ENST00000396373.4:c.1187G>T	p.Arg396Ile	p.R396I	ENST00000396373	NM_001987.4	396	aGa/aTa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16046920	16046920	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0068844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	17	209	0	ENST00000268712.3:c.1173G>T	p.Glu391Asp	p.E391D	ENST00000268712	NM_006311.3	391	gaG/gaT																																																																															
FLT1	2321	MSKCC	GRCh37	13	28901598	28901598	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0068844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	71	296	0	ENST00000282397.4:c.2796+1del		p.X932_splice	ENST00000282397	NM_002019.4	932																																																																																
NTRK3	4916	MSKCC	GRCh37	15	88428931	88428932	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0068844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	40	229	0	ENST00000360948.2:c.2168_2169delinsTT	p.Trp723Phe	p.W723F	ENST00000360948	NM_001012338.2	723	tGG/tTT																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825519	50825520	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0068844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	59	292	0	ENST00000398568.2:c.2155_2156del	p.Asn719Ter	p.N719*	ENST00000398568	NM_001042412.1	717	gAA/g																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120479971	120479971	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	103	430	0	ENST00000256646.2:c.3456G>T	p.Glu1152Asp	p.E1152D	ENST00000256646	NM_024408.3	1152	gaG/gaT																																																																															
RB1	5925	MSKCC	GRCh37	13	49037876	49037876	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	57	257	0	ENST00000267163.4:c.2116T>C	p.Cys706Arg	p.C706R	ENST00000267163	NM_000321.2	706	Tgt/Cgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0068973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	68	222	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907031	101907031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	50	266	0	ENST00000374994.4:c.991C>T	p.His331Tyr	p.H331Y	ENST00000374994	NM_004612.2	331	Cat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0068977-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	22	350	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577144	7577146	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0068977-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	19	534	0	ENST00000269305.4:c.792_794del	p.Leu265del	p.L265del	ENST00000269305	NM_001126112.2	264	ctACTg/ctg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0068978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	480	385	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs786203436		P-0068978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	404	579	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111794	56111794	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs557606535		P-0068978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	188	308	0	ENST00000399503.3:c.394G>A	p.Asp132Asn	p.D132N	ENST00000399503	NM_005921.1	132	Gac/Aac																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041679	29041679	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	50	367	0	ENST00000282397.4:c.140A>T	p.Gln47Leu	p.Q47L	ENST00000282397	NM_002019.4	47	cAg/cTg																																																																															
SYK	6850	MSKCC	GRCh37	9	93606254	93606254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	45	399	0	ENST00000375746.1:c.74C>T	p.Ala25Val	p.A25V	ENST00000375746	NM_001174167.1	25	gCa/gTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0068979-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	319	310	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913407		P-0068979-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	150	331	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0068979-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	57	325	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
CCND2	894	MSKCC	GRCh37	12	4409060	4409060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781695497		P-0068979-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	39	294	0	ENST00000261254.3:c.755C>T	p.Ala252Val	p.A252V	ENST00000261254	NM_001759.3	252	gCg/gTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006827	47006827	+	5_prime_UTR_variant	5'UTR	SNP	C	C	T			P-0068979-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	192	361	0	ENST00000329236.7:c.-54C>T		p.*18*	ENST00000329236	NM_001204466.1																																																																																	
PDCD1	5133	MSKCC	GRCh37	2	242793407	242793407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068979-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	81	480	0	ENST00000334409.5:c.670G>A	p.Gly224Arg	p.G224R	ENST00000334409	NM_005018.2	224	Ggg/Agg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17941335	17941335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068979-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	41	327	4	ENST00000458235.1:c.3073G>A	p.Asp1025Asn	p.D1025N	ENST00000458235	NM_000215.3	1025	Gac/Aac																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761413	59761414	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0068979-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			775	47	306	0	ENST00000259008.2:c.2993dup	p.Arg999GlufsTer3	p.R999Efs*3	ENST00000259008	NM_032043.2	998	aag/aaAg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435496	18435496	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068979-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	73	315	0	ENST00000266497.5:c.481G>C	p.Glu161Gln	p.E161Q	ENST00000266497		161	Gaa/Caa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396336	139396371	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGGTCAGGCAGAACCACGGGCTCCTCGAACTACAT	CAGGTCAGGCAGAACCACGGGCTCCTCGAACTACAT	-			P-0068979-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			787	128	391	0	ENST00000277541.6:c.5473-6_5502del		p.X1825_splice	ENST00000277541	NM_017617.3	1825																																																																																
PMS1	5378	MSKCC	GRCh37	2	190728907	190728907	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068979-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	60	302	0	ENST00000441310.2:c.2295T>A	p.His765Gln	p.H765Q	ENST00000441310	NM_000534.4	765	caT/caA																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139780983	139780998	+	splice_donor_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	GCGACCGTTGGGTGAG	GCGACCGTTGGGTGAG	-			P-0068979-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	21	82	0	ENST00000247668.2:c.-35_-29+9del		p.X12_splice	ENST00000247668	NM_021138.3	12																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176519701	176519701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068979-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			751	69	401	0	ENST00000292408.4:c.973G>A	p.Ala325Thr	p.A325T	ENST00000292408	NM_213647.1	325	Gcc/Acc																																																																															
MGA	23269	MSKCC	GRCh37	15	41988834	41988835	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0068979-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	288	360	0	ENST00000219905.7:c.1628_1629del	p.Tyr543SerfsTer12	p.Y543Sfs*12	ENST00000219905	NM_001164273.1	542	aaATat/aaat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039907	47039907	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0068979-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	195	256	0	ENST00000329236.7:c.1014+2T>C		p.X338_splice	ENST00000329236	NM_001204466.1	338																																																																																
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0068980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	26	435	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0068980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	77	415	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0068980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	32	243	0	ENST00000267163.4:c.1215+1G>T		p.X405_splice	ENST00000267163	NM_000321.2	405																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53223604	53223604	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	33	533	0	ENST00000375401.3:c.3755G>T	p.Arg1252Leu	p.R1252L	ENST00000375401	NM_004187.3	1252	cGc/cTc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931811	68931811	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	21	347	0	ENST00000288368.4:c.241C>G	p.Leu81Val	p.L81V	ENST00000288368	NM_024870.2	81	Ctt/Gtt																																																																															
BTK	695	MSKCC	GRCh37	X	100608214	100608214	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	34	380	0	ENST00000308731.7:c.1876G>C	p.Val626Leu	p.V626L	ENST00000308731	NM_000061.2	626	Gta/Cta																																																																															
RAD50	10111	MSKCC	GRCh37	5	131973861	131973861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	25	319	0	ENST00000265335.6:c.3564G>A	p.Met1188Ile	p.M1188I	ENST00000265335		1188	atG/atA																																																																															
FANCA	2175	MSKCC	GRCh37	16	89883011	89883011	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	33	444	0	ENST00000389301.3:c.13T>A	p.Trp5Arg	p.W5R	ENST00000389301	NM_000135.2	5	Tgg/Agg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390984	89390984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	29	401	0	ENST00000336596.2:c.1050C>A	p.Asp350Glu	p.D350E	ENST00000336596	NM_005233.5	350	gaC/gaA																																																																															
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	T			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	31	367	0	ENST00000558401.1:c.1A>T	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Ttg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680737	88680737	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	21	312	0	ENST00000360948.2:c.520T>C	p.Trp174Arg	p.W174R	ENST00000360948	NM_001012338.2	174	Tgg/Cgg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120717	115120717	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	51	421	0	ENST00000257566.3:c.289G>T	p.Glu97Ter	p.E97*	ENST00000257566	NM_016569.3	97	Gaa/Taa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437564	52437565	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	44	468	0	ENST00000460680.1:c.1596dup	p.Gly533TrpfsTer4	p.G533Wfs*4	ENST00000460680	NM_004656.3	532	-/T																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143003189	143003189	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764114435		P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	17	242	0	ENST00000262992.4:c.2637G>A	p.Met879Ile	p.M879I	ENST00000262992	NM_001101669.1	879	atG/atA																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727405	66727405	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	33	339	0	ENST00000307102.5:c.121G>C	p.Glu41Gln	p.E41Q	ENST00000307102	NM_002755.3	41	Gag/Cag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18576963	18576963	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778117246		P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	21	287	0	ENST00000266497.5:c.2371C>T	p.Arg791Cys	p.R791C	ENST00000266497		791	Cgt/Tgt																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946129	13946129	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	66	328	0	ENST00000405192.2:c.967G>C	p.Asp323His	p.D323H	ENST00000405192	NM_001163147.1	323	Gat/Cat																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679265	88679265	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	27	332	0	ENST00000360948.2:c.772C>A	p.Leu258Met	p.L258M	ENST00000360948	NM_001012338.2	258	Ctg/Atg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225342916	225342916	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	40	263	0	ENST00000264414.4:c.2175+1G>T		p.X725_splice	ENST00000264414	NM_003590.4	725																																																																																
FANCA	2175	MSKCC	GRCh37	16	89880942	89880942	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779218902		P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	25	244	0	ENST00000389301.3:c.269C>T	p.Ser90Phe	p.S90F	ENST00000389301	NM_000135.2	90	tCt/tTt																																																																															
E2F3	1871	MSKCC	GRCh37	6	20488453	20488453	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	51	339	0	ENST00000346618.3:c.1109G>T	p.Gly370Val	p.G370V	ENST00000346618	NM_001949.4	370	gGg/gTg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086124	16086124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	18	428	0	ENST00000281043.3:c.1300C>G	p.Gln434Glu	p.Q434E	ENST00000281043	NM_005378.4	434	Cag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578373	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CCAT	CCAT	-			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	89	477	0	ENST00000269305.4:c.557_559+1del		p.X186_splice	ENST00000269305	NM_001126112.2	186																																																																																
FLT3	2322	MSKCC	GRCh37	13	28636027	28636027	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	24	355	0	ENST00000241453.7:c.345G>C	p.Gln115His	p.Q115H	ENST00000241453	NM_004119.2	115	caG/caC																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804164	46804164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	23	324	0	ENST00000290295.7:c.843C>A	p.Ser281Arg	p.S281R	ENST00000290295	NM_006361.5	281	agC/agA																																																																															
KDM5A	5927	MSKCC	GRCh37	12	420196	420196	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	43	314	0	ENST00000399788.2:c.3071A>T	p.Glu1024Val	p.E1024V	ENST00000399788	NM_001042603.1	1024	gAg/gTg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665420	138665420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	23	360	0	ENST00000330315.3:c.145C>A	p.Pro49Thr	p.P49T	ENST00000330315	NM_023067.3	49	Ccg/Acg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936725	150936725	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	46	419	0	ENST00000271640.5:c.3761G>C	p.Arg1254Thr	p.R1254T	ENST00000271640	NM_001145415.1	1254	aGa/aCa																																																																															
KDR	3791	MSKCC	GRCh37	4	55948725	55948725	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	35	228	0	ENST00000263923.4:c.3740C>A	p.Pro1247Gln	p.P1247Q	ENST00000263923	NM_002253.2	1247	cCa/cAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573651	48573652	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	18	330	0	ENST00000342988.3:c.236dup	p.Asp79GlufsTer25	p.D79Efs*25	ENST00000342988	NM_005359.5	79	gat/gAat																																																																															
RAD52	5893	MSKCC	GRCh37	12	1023648	1023648	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	41	311	0	ENST00000358495.3:c.916G>C	p.Glu306Gln	p.E306Q	ENST00000358495	NM_134424.2	306	Gaa/Caa																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29197748	29197748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	35	390	0	ENST00000240100.2:c.446G>A	p.Arg149Lys	p.R149K	ENST00000240100	NM_001394.6	149	aGg/aAg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243800918	243800919	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	16	270	0	ENST00000263826.5:c.555dup	p.Ala186CysfsTer4	p.A186Cfs*4	ENST00000263826	NM_005465.4	185	-/T																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962765	2962765	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	61	302	0	ENST00000396946.4:c.2142+1G>A		p.X714_splice	ENST00000396946	NM_032415.4	714																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81957166	81957166	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1357062302		P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	23	378	1	ENST00000359376.3:c.2384T>A	p.Leu795His	p.L795H	ENST00000359376	NM_002661.3	795	cTc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5208363	5208364	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	50	333	0	ENST00000357368.4:c.5526dup	p.Asp1843ArgfsTer23	p.D1843Rfs*23	ENST00000357368	NM_002850.3	1842	-/A																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226998	53226998	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	52	147	0	ENST00000375401.3:c.2577G>C	p.Gln859His	p.Q859H	ENST00000375401	NM_004187.3	859	caG/caC																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420309	88420309	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	27	414	0	ENST00000360948.2:c.2377del	p.Arg793GlufsTer23	p.R793Efs*23	ENST00000360948	NM_001012338.2	793	Cga/ga																																																																															
NF1	4763	MSKCC	GRCh37	17	29701099	29701099	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	48	387	0	ENST00000358273.4:c.8446G>T	p.Gly2816Ter	p.G2816*	ENST00000358273	NM_001042492.2	2816	Gga/Tga																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230548	46230548	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	61	370	0	ENST00000334344.6:c.799del	p.Glu267SerfsTer25	p.E267Sfs*25	ENST00000334344	NM_152641.2	266	tGg/tg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94128974	94128975	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	56	329	2	ENST00000369303.4:c.85_86delinsAA	p.Ala29Asn	p.A29N	ENST00000369303	NM_004440.3	29	GCt/AAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020410	69020410	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	85	346	0	ENST00000288368.4:c.2782C>A	p.Leu928Met	p.L928M	ENST00000288368	NM_024870.2	928	Ctg/Atg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635177	87635177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	37	355	0	ENST00000277120.3:c.2229C>A	p.Tyr743Ter	p.Y743*	ENST00000277120		743	taC/taA																																																																															
RET	5979	MSKCC	GRCh37	10	43622128	43622128	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	34	385	0	ENST00000355710.3:c.3145C>A	p.Pro1049Thr	p.P1049T	ENST00000355710	NM_020975.4	1049	Cct/Act																																																																															
CIC	23152	MSKCC	GRCh37	19	42795077	42795079	+	frameshift_variant	Frame_Shift_Del	DEL	GGG	GGG	TG			P-0069027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	74	494	2	ENST00000575354.2:c.2157_2158delinsT	p.Gly720AlafsTer8	p.G720Afs*8	ENST00000575354	NM_015125.3	719	ggGGGc/ggTGc																																																																															
ATR	545	MSKCC	GRCh37	3	142226924	142226924	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	30	382	0	ENST00000350721.4:c.4880A>T	p.Gln1627Leu	p.Q1627L	ENST00000350721	NM_001184.3	1627	cAg/cTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89845237	89845237	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765036744		P-0069028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	45	453	0	ENST00000389301.3:c.1798C>T	p.Arg600Cys	p.R600C	ENST00000389301	NM_000135.2	600	Cgt/Tgt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061313	38061313	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1204900727		P-0069028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	139	552	0	ENST00000250448.2:c.676G>A	p.Asp226Asn	p.D226N	ENST00000250448	NM_004496.3	226	Gac/Aac																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55143608	55143608	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1320506684		P-0069028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	88	466	0	ENST00000257290.5:c.1840G>A	p.Gly614Arg	p.G614R	ENST00000257290	NM_006206.4	614	Gga/Aga																																																																															
SYK	6850	MSKCC	GRCh37	9	93627378	93627378	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs201994789		P-0069030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	61	320	0	ENST00000375746.1:c.845C>T	p.Ala282Val	p.A282V	ENST00000375746	NM_001174167.1	282	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	57	336	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152197	11152197	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	83	488	0	ENST00000344626.4:c.4385T>A	p.Met1462Lys	p.M1462K	ENST00000344626	NM_003072.3	1462	aTg/aAg																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51503214	51503214	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			805	89	465	0	ENST00000260433.2:c.1303C>A	p.Arg435Ser	p.R435S	ENST00000260433		435	Cgt/Agt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412460	63412460	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1247681502		P-0069036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			803	82	567	0	ENST00000330258.3:c.707G>A	p.Gly236Glu	p.G236E	ENST00000330258	NM_152424.3	236	gGg/gAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0069037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	17	501	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40979290	40979290	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	68	479	0	ENST00000373198.4:c.1843C>T	p.Gln615Ter	p.Q615*	ENST00000373198	NM_133170.3	615	Cag/Tag																																																																															
RB1	5925	MSKCC	GRCh37	13	49027133	49027133	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137853292		P-0069037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	36	337	0	ENST00000267163.4:c.1700C>T	p.Ser567Leu	p.S567L	ENST00000267163	NM_000321.2	567	tCa/tTa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53250046	53250047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs782600511		P-0069037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	60	199	0	ENST00000375401.3:c.202dup	p.Arg68ProfsTer7	p.R68Pfs*7	ENST00000375401	NM_004187.3	68	cga/cCga																																																																															
STK11	6794	MSKCC	GRCh37	19	1221302	1221302	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	89	556	0	ENST00000326873.7:c.827del	p.Gly276AlafsTer11	p.G276Afs*11	ENST00000326873	NM_000455.4	275	ccG/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	26	341	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0069037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	9	341	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TET2	54790	MSKCC	GRCh37	4	106194025	106194044	+	frameshift_variant	Frame_Shift_Del	DEL	CATCACGTACAAAACAAACT	CATCACGTACAAAACAAACT	-			P-0069037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	66	482	0	ENST00000380013.4:c.4487_4506del	p.Pro1496ArgfsTer7	p.P1496Rfs*7	ENST00000380013	NM_001127208.2	1496	cCATCACGTACAAAACAAACT/c																																																																															
TEK	7010	MSKCC	GRCh37	9	27190562	27190562	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	77	507	0	ENST00000380036.4:c.1363G>C	p.Asp455His	p.D455H	ENST00000380036	NM_000459.3	455	Gac/Cac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039285	47039285	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	81	278	0	ENST00000329236.7:c.677T>A	p.Ile226Asn	p.I226N	ENST00000329236	NM_001204466.1	226	aTt/aAt																																																																															
WT1	7490	MSKCC	GRCh37	11	32456600	32456600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	17	261	0	ENST00000332351.3:c.292G>A	p.Gly98Ser	p.G98S	ENST00000332351	NM_024426.4	98	Ggc/Agc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526322	31526322	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs970742651		P-0069099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	58	447	0	ENST00000344624.3:c.718C>T	p.Arg240Ter	p.R240*	ENST00000344624		240	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0069099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	196	262	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ABL1	25	MSKCC	GRCh37	9	133730391	133730391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	54	360	0	ENST00000318560.5:c.457G>A	p.Glu153Lys	p.E153K	ENST00000318560	NM_005157.4	153	Gag/Aag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332565	153332565	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	90	444	0	ENST00000281708.4:c.391A>T	p.Ser131Cys	p.S131C	ENST00000281708	NM_033632.3	131	Agt/Tgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0069104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	110	408	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212576866	212576866	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	138	291	0	ENST00000342788.4:c.1033G>T	p.Ala345Ser	p.A345S	ENST00000342788	NM_005235.2	345	Gct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782596		P-0069104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	129	517	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0069104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	152	261	0	ENST00000329236.7:c.1459+1G>T		p.X487_splice	ENST00000329236	NM_001204466.1	487																																																																																
TET2	54790	MSKCC	GRCh37	4	106190858	106190858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	111	304	0	ENST00000380013.4:c.4136C>T	p.Ala1379Val	p.A1379V	ENST00000380013	NM_001127208.2	1379	gCt/gTt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402728	139402728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	279	418	0	ENST00000277541.6:c.3281G>A	p.Cys1094Tyr	p.C1094Y	ENST00000277541	NM_017617.3	1094	tGc/tAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0069104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	244	257	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434943	49434943	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	115	424	0	ENST00000301067.7:c.6610G>T	p.Gly2204Trp	p.G2204W	ENST00000301067	NM_003482.3	2204	Ggg/Tgg																																																																															
GAB1	2549	MSKCC	GRCh37	4	144359159	144359159	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	82	346	0	ENST00000262994.4:c.601G>C	p.Ala201Pro	p.A201P	ENST00000262994	NM_002039.3	201	Gct/Cct																																																																															
ALK	238	MSKCC	GRCh37	2	29432707	29432707	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759144859		P-0069104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	117	357	0	ENST00000389048.3:c.3781G>A	p.Gly1261Ser	p.G1261S	ENST00000389048	NM_004304.4	1261	Ggc/Agc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638902	176638902	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs766742277		P-0069104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	138	470	0	ENST00000439151.2:c.3502A>G	p.Thr1168Ala	p.T1168A	ENST00000439151	NM_022455.4	1168	Act/Gct																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459546	50459546	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	152	314	0	ENST00000331340.3:c.835C>G	p.Pro279Ala	p.P279A	ENST00000331340	NM_006060.4	279	Cct/Gct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0069133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	1048	360	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578450	7578460	+	frameshift_variant	Frame_Shift_Del	DEL	CATGGCGCGGA	CATGGCGCGGA	-			P-0069133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	165	456	0	ENST00000269305.4:c.470_480del	p.Val157GlyfsTer20	p.V157Gfs*20	ENST00000269305	NM_001126112.2	157	gTCCGCGCCATG/g																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984831	11984845	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	AAATAATGGCAGTTA	AAATAATGGCAGTTA	-			P-0069133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	107	272	0	ENST00000353533.5:c.379_393del	p.Ile127_Lys131del	p.I127_K131del	ENST00000353533	NM_003010.3	126	cAAATAATGGCAGTTAaa/caa																																																																															
CDC42	998	MSKCC	GRCh37	1	22413305	22413305	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	15	132	0	ENST00000344548.3:c.432G>T	p.Lys144Asn	p.K144N	ENST00000344548	NM_001039802.1	144	aaG/aaT																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5208390	5208390	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1269269717		P-0069133-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	23	346	0	ENST00000357368.4:c.5500C>T	p.Arg1834Trp	p.R1834W	ENST00000357368	NM_002850.3	1834	Cgg/Tgg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0069134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	118	307	1	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916946	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0069134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	609	337	1	ENST00000263967.3:c.332_334del	p.Lys111del	p.K111del	ENST00000263967	NM_006218.2	111	AAG/-																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368223	45368223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	41	379	0	ENST00000262160.6:c.1379C>T	p.Ser460Leu	p.S460L	ENST00000262160	NM_005901.5	460	tCa/tTa																																																																															
BLM	641	MSKCC	GRCh37	15	91326152	91326152	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765636566		P-0069134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	34	344	0	ENST00000355112.3:c.2656C>T	p.His886Tyr	p.H886Y	ENST00000355112	NM_000057.2	886	Cac/Tac																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620592	52620592	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	172	392	0	ENST00000394830.3:c.3161C>A	p.Pro1054His	p.P1054H	ENST00000394830	NM_018313.4	1054	cCc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0069136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	292	341	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220706	1220706	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	460	373	0	ENST00000326873.7:c.727del	p.Val243SerfsTer44	p.V243Sfs*44	ENST00000326873	NM_000455.4	242	Ggg/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0069136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	304	223	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061900	38061900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1061	174	480	0	ENST00000250448.2:c.89C>T	p.Pro30Leu	p.P30L	ENST00000250448	NM_004496.3	30	cCg/cTg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683679	162683679	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs369634041		P-0069136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	374	339	1	ENST00000366898.1:c.290G>T	p.Arg97Leu	p.R97L	ENST00000366898	NM_004562.2	97	cGg/cTg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198288576	198288609	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTGCTGTCACTTCCACCATAAATTTCCTGGTC	ATCTGCTGTCACTTCCACCATAAATTTCCTGGTC	-			P-0069136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	119	310	0	ENST00000335508.6:c.118_151del	p.Asp40LeufsTer5	p.D40Lfs*5	ENST00000335508	NM_012433.2	40	GACCAGGAAATTTATGGTGGAAGTGACAGCAGATtt/tt																																																																															
BIRC3	330	MSKCC	GRCh37	11	102207499	102207499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	60	288	0	ENST00000263464.3:c.1588G>A	p.Asp530Asn	p.D530N	ENST00000263464	NM_001165.4	530	Gac/Aac																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056229	26056229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	149	431	0	ENST00000343677.2:c.428G>A	p.Gly143Asp	p.G143D	ENST00000343677	NM_005319.3	143	gGc/gAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130286	11130286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			94	424	374	0	ENST00000344626.4:c.2525G>T	p.Arg842Leu	p.R842L	ENST00000344626	NM_003072.3	842	cGg/cTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120529648	120529648	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	255	380	0	ENST00000256646.2:c.809A>G	p.Gln270Arg	p.Q270R	ENST00000256646	NM_024408.3	270	cAg/cGg																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66519006	66519006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	101	392	0	ENST00000358598.2:c.287G>A	p.Arg96Gln	p.R96Q	ENST00000358598	NM_212471.2	96	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs876659675		P-0069208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	35	290	0	ENST00000269305.4:c.764T>G	p.Ile255Ser	p.I255S	ENST00000269305	NM_001126112.2	255	aTc/aGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767326		P-0069208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	24	228	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971163	21971164	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGC			P-0069208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	21	437	0	ENST00000304494.5:c.192_194dup	p.Leu65dup	p.L65dup	ENST00000304494	NM_000077.4	65	ctc/ctGCTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0069208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	20	237	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0069211-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	81	172	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
RB1	5925	MSKCC	GRCh37	13	48953730	48953730	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs3092891		P-0069211-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	66	111	0	ENST00000267163.4:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000267163	NM_000321.2	445	Cga/Tga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166270	32166270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069211-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	56	306	0	ENST00000375023.3:c.4684C>T	p.Pro1562Ser	p.P1562S	ENST00000375023	NM_004557.3	1562	Cct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0069211-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	110	264	0	ENST00000269305.4:c.374del	p.Thr125SerfsTer45	p.T125Sfs*45	ENST00000269305	NM_001126112.2	125	aCg/ag																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134226	41134226	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069211-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	63	304	0	ENST00000379561.5:c.1402T>G	p.Ser468Ala	p.S468A	ENST00000379561	NM_002015.3	468	Tct/Gct																																																																															
ID3	3399	MSKCC	GRCh37	1	23885887	23885887	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069211-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	50	271	0	ENST00000374561.5:c.31T>G	p.Tyr11Asp	p.Y11D	ENST00000374561	NM_002167.4	11	Tac/Gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	114	344	0	ENST00000269305.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000269305	NM_001126112.2	105	Ggc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0069246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	50	203	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0069246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	86	222	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112175153	112175153	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	91	313	0	ENST00000257430.4:c.3862G>T	p.Gly1288Ter	p.G1288*	ENST00000257430	NM_000038.5	1288	Gga/Tga																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374929	45374929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	165	287	2	ENST00000262160.6:c.914C>T	p.Pro305Leu	p.P305L	ENST00000262160	NM_005901.5	305	cCa/cTa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473692	67473692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	75	274	3	ENST00000327367.4:c.772G>A	p.Asp258Asn	p.D258N	ENST00000327367	NM_005902.3	258	Gat/Aat																																																																															
BLM	641	MSKCC	GRCh37	15	91292893	91292893	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775197136		P-0069246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	90	315	0	ENST00000355112.3:c.395G>A	p.Arg132Gln	p.R132Q	ENST00000355112	NM_000057.2	132	cGg/cAg																																																																															
STK40	83931	MSKCC	GRCh37	1	36809512	36809512	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748294638		P-0069246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	72	252	0	ENST00000373129.3:c.953G>A	p.Arg318His	p.R318H	ENST00000373129	NM_032017.1	318	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247205	153247205	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	148	243	2	ENST00000281708.4:c.1597T>C	p.Cys533Arg	p.C533R	ENST00000281708	NM_033632.3	533	Tgt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0069252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	159	358	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0069252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	153	330	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
AR	367	MSKCC	GRCh37	X	66765205	66765205	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	59	206	0	ENST00000374690.3:c.217C>T	p.Gln73Ter	p.Q73*	ENST00000374690	NM_000044.3	73	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	102	209	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ATRX	546	MSKCC	GRCh37	X	76953081	76953081	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	70	187	0	ENST00000373344.5:c.232C>T	p.Arg78Ter	p.R78*	ENST00000373344	NM_000489.3	78	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112137021	112137021	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	108	211	0	ENST00000257430.4:c.775del	p.Arg259GlyfsTer34	p.R259Gfs*34	ENST00000257430	NM_000038.5	259	Cgg/gg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520017		P-0069782-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			45	501	470	0	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851685	134851685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069782-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			44	371	420	0	ENST00000398015.3:c.1091G>T	p.Arg364Leu	p.R364L	ENST00000398015	NM_004441.4	364	cGg/cTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133249229	133249229	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069782-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			37	669	364	0	ENST00000320574.5:c.1670C>G	p.Pro557Arg	p.P557R	ENST00000320574	NM_006231.2	557	cCt/cGt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306517	41306517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069782-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	199	264	0	ENST00000373198.4:c.1142C>T	p.Thr381Ile	p.T381I	ENST00000373198	NM_133170.3	381	aCc/aTc																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735635	204735635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069782-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			47	543	402	0	ENST00000302823.3:c.436G>A	p.Gly146Arg	p.G146R	ENST00000302823	NM_005214.4	146	Gga/Aga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602543	10602543	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069782-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			64	442	522	0	ENST00000171111.5:c.1035C>A	p.Tyr345Ter	p.Y345*	ENST00000171111	NM_203500.1	345	taC/taA																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111475	8111475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069782-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			55	402	392	0	ENST00000346208.3:c.961C>A	p.Gln321Lys	p.Q321K	ENST00000346208		321	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577555	7577575	+	inframe_deletion	In_Frame_Del	DEL	GCAGGAACTGTTACACATGTA	GCAGGAACTGTTACACATGTA	-			P-0069782-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			53	347	348	0	ENST00000269305.4:c.706_726del	p.Tyr236_Cys242del	p.Y236_C242del	ENST00000269305	NM_001126112.2	236	TACATGTGTAACAGTTCCTGC/-																																																																															
IDH1	3417	MSKCC	GRCh37	2	209101827	209101827	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069782-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			476	42	257	0	ENST00000345146.2:c.1221C>G	p.Ile407Met	p.I407M	ENST00000345146	NM_005896.2	407	atC/atG																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046682	180046682	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069782-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			329	261	556	0	ENST00000261937.6:c.2630C>G	p.Ala877Gly	p.A877G	ENST00000261937	NM_182925.4	877	gCc/gGc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467989	66467989	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069782-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			340	132	316	0	ENST00000273854.3:c.280G>C	p.Ala94Pro	p.A94P	ENST00000273854	NM_004439.5	94	Gcc/Ccc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77048392	77048392	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069782-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			342	261	299	0	ENST00000356341.3:c.1193G>T	p.Gly398Val	p.G398V	ENST00000356341	NM_002576.4	398	gGa/gTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29527485	29527485	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069782-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			44	284	304	0	ENST00000358273.4:c.934G>T	p.Gly312Ter	p.G312*	ENST00000358273	NM_001042492.2	312	Gga/Tga																																																																															
INHA	3623	MSKCC	GRCh37	2	220437171	220437172	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0069782-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			61	666	447	1	ENST00000243786.2:c.75_76delinsAG	p.Arg26Gly	p.R26G	ENST00000243786	NM_002191.3	25	gcCCgg/gcAGgg																																																																															
IRF4	3662	MSKCC	GRCh37	6	393264	393264	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069782-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			53	866	449	0	ENST00000380956.4:c.112C>A	p.Pro38Thr	p.P38T	ENST00000380956	NM_001195286.1	38	Ccc/Acc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853297	151853307	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCACTAACA	GCTCACTAACA	-			P-0069782-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			369	231	356	0	ENST00000262189.6:c.11795_11805del	p.Val3932AlafsTer2	p.V3932Afs*2	ENST00000262189	NM_170606.2	3932	gTGTTAGTGAGC/g																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020495	69020495	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069782-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			345	177	365	0	ENST00000288368.4:c.2867G>C	p.Ser956Thr	p.S956T	ENST00000288368	NM_024870.2	956	aGt/aCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0070133-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			78	174	274	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410982	63410982	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs771682818		P-0070133-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			296	90	436	0	ENST00000330258.3:c.2185G>C	p.Glu729Gln	p.E729Q	ENST00000330258	NM_152424.3	729	Gag/Cag																																																																															
ATRX	546	MSKCC	GRCh37	X	76890125	76890125	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070133-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			247	27	237	0	ENST00000373344.5:c.4769G>C	p.Cys1590Ser	p.C1590S	ENST00000373344	NM_000489.3	1590	tGc/tCc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17952561	17952561	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070133-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			526	79	405	0	ENST00000458235.1:c.872C>A	p.Pro291His	p.P291H	ENST00000458235	NM_000215.3	291	cCc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0070165-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	13	121	2	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7576866	7576867	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0070200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	71	640	0	ENST00000269305.4:c.979dup	p.Tyr327LeufsTer10	p.Y327Lfs*10	ENST00000269305	NM_001126112.2	327	tat/tTat																																																																															
CASP8	841	MSKCC	GRCh37	2	202150003	202150003	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	33	541	0	ENST00000358485.4:c.1444C>T	p.Gln482Ter	p.Q482*	ENST00000358485	NM_001080125.1	482	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	26	361	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MST1	4485	MSKCC	GRCh37	3	49723378	49723378	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	125	336	0	ENST00000449682.2:c.1165G>C	p.Gly389Arg	p.G389R	ENST00000449682	NM_020998.3	389	Ggg/Cgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539329	187539329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	39	393	0	ENST00000441802.2:c.8411A>G	p.Asp2804Gly	p.D2804G	ENST00000441802	NM_005245.3	2804	gAc/gGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0070608-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	214	214	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205101	38205105	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTT	TCTTT	-			P-0070608-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	52	197	0	ENST00000317025.8:c.585_589del	p.Lys196GlufsTer7	p.K196Efs*7	ENST00000317025	NM_023034.1	195	gaAAAGAgg/gagg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678790	52678790	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0070624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			44	125	141	0	ENST00000394830.3:c.829A>T	p.Lys277Ter	p.K277*	ENST00000394830	NM_018313.4	277	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	152	425	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TC			P-0070625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	263	240	0	ENST00000256078.4:c.180_181inv	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggGAaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262583	16262583	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	112	368	0	ENST00000375759.3:c.9848T>G	p.Leu3283Arg	p.L3283R	ENST00000375759	NM_015001.2	3283	cTg/cGg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186503824	186503824	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	162	273	0	ENST00000323963.5:c.503del	p.Asn168ThrfsTer22	p.N168Tfs*22	ENST00000323963		167	ttA/tt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061248	38061249	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCAGCGTCCAGTAGGAGCAGAACGGC			P-0070626-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	16	406	0	ENST00000250448.2:c.740_741insGCCGTTCTGCTCCTACTGGACGCTGCA	p.Leu246_His247insGlnProPheCysSerTyrTrpThrLeu	p.L246_H247insQPFCSYWTL	ENST00000250448	NM_004496.3	247	cac/caGCCGTTCTGCTCCTACTGGACGCTGCAc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9783259	9783259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	92	410	0	ENST00000377346.4:c.2503G>A	p.Ala835Thr	p.A835T	ENST00000377346	NM_005026.3	835	Gcc/Acc																																																																															
STK40	83931	MSKCC	GRCh37	1	36826927	36826927	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs12086307		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	104	297	0	ENST00000373129.3:c.7C>T	p.Arg3Trp	p.R3W	ENST00000373129	NM_032017.1	3	Cgg/Tgg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162741934	162741934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	135	390	0	ENST00000367921.3:c.1625C>T	p.Ala542Val	p.A542V	ENST00000367921	NM_006182.2	542	gCc/gTc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948586	71948586	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	58	452	0	ENST00000298229.2:c.3302del	p.Pro1101GlnfsTer30	p.P1101Qfs*30	ENST00000298229	NM_001567.3	1100	Ccc/cc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125507402	125507403	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	122	286	0	ENST00000428830.2:c.783dup	p.Asp262ArgfsTer2	p.D262Rfs*2	ENST00000428830	NM_001114121.2	259	-/A																																																																															
RAB35	11021	MSKCC	GRCh37	12	120536843	120536843	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	87	305	0	ENST00000229340.5:c.343C>T	p.Arg115Ter	p.R115*	ENST00000229340	NM_006861.6	115	Cga/Tga																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562160	21562160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	108	417	0	ENST00000382592.4:c.1759G>A	p.Glu587Lys	p.E587K	ENST00000382592	NM_014572.2	587	Gaa/Aaa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103519037	103519037	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434571		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	109	370	0	ENST00000355739.4:c.2375C>T	p.Ala792Val	p.A792V	ENST00000355739	NM_000123.3	792	gCg/gTg																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643392	38643392	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	160	289	0	ENST00000299084.4:c.867del	p.Lys289AsnfsTer14	p.K289Nfs*14	ENST00000299084	NM_152594.2	288	Aaa/aa																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	136	353	2	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2096132	2096133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs763525759		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	139	304	0	ENST00000219066.1:c.374dup	p.Val127GlyfsTer43	p.V127Gfs*43	ENST00000219066	NM_002528.5	125	cca/ccCa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778282	3778282	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	82	484	0	ENST00000262367.5:c.6766del	p.Leu2256SerfsTer46	p.L2256Sfs*46	ENST00000262367	NM_004380.2	2256	Ctc/tc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	136	394	0	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	504	532	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	26	453	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238941	5238941	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs913402227		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	58	356	0	ENST00000357368.4:c.1838C>T	p.Thr613Met	p.T613M	ENST00000357368	NM_002850.3	613	aCg/aTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953881	17953881	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767865565		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	145	378	0	ENST00000458235.1:c.521C>T	p.Ala174Val	p.A174V	ENST00000458235	NM_000215.3	174	gCg/gTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966873	25966873	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1271466699		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	92	430	9	ENST00000435504.4:c.2333del	p.Pro778GlnfsTer21	p.P778Qfs*21	ENST00000435504		778	cCa/ca																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630566	67630567	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	169	292	0	ENST00000272342.5:c.758dup	p.Pro254AlafsTer13	p.P254Afs*13	ENST00000272342	NM_019002.3	251	aca/acAa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660093	227660093	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143913301		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	190	426	0	ENST00000305123.5:c.3362C>T	p.Ala1121Val	p.A1121V	ENST00000305123	NM_005544.2	1121	gCg/gTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	156	436	4	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	102	404	10	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31395677	31395677	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1267164985		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	107	425	0	ENST00000328111.2:c.2530G>A	p.Ala844Thr	p.A844T	ENST00000328111	NM_006892.3	844	Gcc/Acc																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656873	45656873	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs865851162		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	115	376	1	ENST00000407780.3:c.283G>A	p.Asp95Asn	p.D95N	ENST00000407780	NM_001283052.1	95	Gac/Aac																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29092948	29092948	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201206424		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	89	235	0	ENST00000328354.6:c.1036C>T	p.Arg346Cys	p.R346C	ENST00000328354	NM_007194.3	346	Cgt/Tgt																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446537	29446537	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	56	375	0	ENST00000544604.2:c.2372del	p.Gly791AlafsTer14	p.G791Afs*14	ENST00000544604	NM_001206998.1	790	Ggg/gg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928834	49928834	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs878910700		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	111	404	0	ENST00000296474.3:c.3532C>T	p.Arg1178Trp	p.R1178W	ENST00000296474	NM_002447.2	1178	Cgg/Tgg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664761	138664761	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1057516177		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	46	305	0	ENST00000330315.3:c.804del	p.Gly269AlafsTer2	p.G269Afs*2	ENST00000330315	NM_023067.3	268	ccC/cc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191049	185191049	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	211	409	0	ENST00000265026.3:c.1934del	p.Pro645LeufsTer19	p.P645Lfs*19	ENST00000265026	NM_004721.4	644	Ccc/cc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	92	317	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294665	1294665	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	58	352	1	ENST00000310581.5:c.336del	p.Glu113ArgfsTer15	p.E113Rfs*15	ENST00000310581	NM_198253.2	112	ccC/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	270	230	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149509413	149509413	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1225116257		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	129	384	0	ENST00000261799.4:c.1486C>T	p.Arg496Cys	p.R496C	ENST00000261799	NM_002609.3	496	Cgt/Tgt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528284	157528284	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs749055122		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	184	416	1	ENST00000346085.5:c.6013del	p.Val2005TrpfsTer16	p.V2005Wfs*16	ENST00000346085	NM_020732.3	2003	aaG/aa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	49	301	4	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	100	250	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187222	38187222	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	137	329	0	ENST00000317025.8:c.1255del	p.Thr419ProfsTer8	p.T419Pfs*8	ENST00000317025	NM_023034.1	419	Acc/cc																																																																															
MYC	4609	MSKCC	GRCh37	8	128750677	128750677	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28933407		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	160	348	0	ENST00000377970.2:c.214C>T	p.Pro72Ser	p.P72S	ENST00000377970	NM_002467.4	72	Ccc/Tcc																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015109	37015109	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	109	378	0	ENST00000358127.4:c.295del	p.Ile99SerfsTer60	p.I99Sfs*60	ENST00000358127	NM_001280556.1	99	Atc/tc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913253	39913253	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	147	378	2	ENST00000378444.4:c.4862del	p.Pro1621GlnfsTer53	p.P1621Qfs*53	ENST00000378444	NM_001123385.1	1621	cCa/ca																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918514	44918514	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	100	272	0	ENST00000377967.4:c.997C>T	p.Gln333Ter	p.Q333*	ENST00000377967	NM_021140.2	333	Cag/Tag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410021	63410021	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1258291174		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	88	435	0	ENST00000330258.3:c.3146G>A	p.Arg1049Gln	p.R1049Q	ENST00000330258	NM_152424.3	1049	cGa/cAa																																																																															
GNB1	2782	MSKCC	GRCh37	1	1720551	1720553	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	148	306	0	ENST00000378609.4:c.855_857del	p.Leu286del	p.L286del	ENST00000378609	NM_002074.3	285	ctCCTt/ctt																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150915044	150915044	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	122	301	0	ENST00000271640.5:c.553T>A	p.Leu185Met	p.L185M	ENST00000271640	NM_001145415.1	185	Ttg/Atg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175996717	175996717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	120	311	0	ENST00000367669.3:c.1720G>A	p.Gly574Ser	p.G574S	ENST00000367669	NM_022457.5	574	Ggc/Agc																																																																															
RET	5979	MSKCC	GRCh37	10	43601884	43601884	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs773631693		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	94	388	0	ENST00000355710.3:c.928C>A	p.Leu310Met	p.L310M	ENST00000355710	NM_020975.4	310	Ctg/Atg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344693	118344693	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	140	346	0	ENST00000534358.1:c.2819A>T	p.Asp940Val	p.D940V	ENST00000534358	NM_005933.3	940	gAt/gTt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374398	118374398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	128	432	0	ENST00000534358.1:c.7791G>T	p.Gln2597His	p.Q2597H	ENST00000534358	NM_005933.3	2597	caG/caT																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18524181	18524181	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	110	286	0	ENST00000266497.5:c.1693A>G	p.Ile565Val	p.I565V	ENST00000266497		565	Att/Gtt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435305	49435305	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	125	361	0	ENST00000301067.7:c.6248A>G	p.Gln2083Arg	p.Q2083R	ENST00000301067	NM_003482.3	2083	cAg/cGg																																																																															
MDM2	4193	MSKCC	GRCh37	12	69222647	69222647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	177	320	0	ENST00000462284.1:c.620T>A	p.Val207Glu	p.V207E	ENST00000462284	NM_002392.5	207	gTa/gAa																																																																															
POLE	5426	MSKCC	GRCh37	12	133238192	133238192	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs765066823		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	98	274	0	ENST00000320574.5:c.2785A>G	p.Ile929Val	p.I929V	ENST00000320574	NM_006231.2	929	Atc/Gtc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953908	32953908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	110	262	0	ENST00000380152.3:c.8975C>T	p.Pro2992Leu	p.P2992L	ENST00000380152		2992	cCa/cTa																																																																															
RB1	5925	MSKCC	GRCh37	13	48881486	48881486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	147	235	0	ENST00000267163.4:c.208G>A	p.Val70Ile	p.V70I	ENST00000267163	NM_000321.2	70	Gtc/Atc																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675128	40675128	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	123	350	0	ENST00000249776.8:c.92A>G	p.Tyr31Cys	p.Y31C	ENST00000249776	NM_033286.3	31	tAc/tGc																																																																															
MGA	23269	MSKCC	GRCh37	15	41991328	41991328	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	39	252	0	ENST00000219905.7:c.2159A>G	p.Lys720Arg	p.K720R	ENST00000219905	NM_001164273.1	720	aAg/aGg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67462906	67462907	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	116	296	0	ENST00000327367.4:c.626dup	p.Asn210GlufsTer8	p.N210Efs*8	ENST00000327367	NM_005902.3	208	tcc/tCcc																																																																															
CDH1	999	MSKCC	GRCh37	16	68845668	68845668	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	125	318	0	ENST00000261769.5:c.914T>C	p.Leu305Pro	p.L305P	ENST00000261769	NM_004360.3	305	cTc/cCc																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544866	86544866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	52	351	0	ENST00000262426.4:c.691G>A	p.Ala231Thr	p.A231T	ENST00000262426	NM_001451.2	231	Gcg/Acg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18272259	18272259	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1396538206		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	208	485	0	ENST00000222254.8:c.769G>A	p.Ala257Thr	p.A257T	ENST00000222254	NM_005027.3	257	Gcg/Acg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18943250	18943250	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	19	244	0	ENST00000262803.5:c.231+1G>T		p.X77_splice	ENST00000262803	NM_002911.3	77																																																																																
AKT2	208	MSKCC	GRCh37	19	40745962	40745962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	88	361	0	ENST00000392038.2:c.629C>T	p.Pro210Leu	p.P210L	ENST00000392038	NM_001626.4	210	cCg/cTg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45854961	45854961	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	76	320	0	ENST00000391945.4:c.2209T>A	p.Ser737Thr	p.S737T	ENST00000391945	NM_000400.3	737	Tcc/Acc																																																																															
ALK	238	MSKCC	GRCh37	2	30143236	30143236	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	73	407	0	ENST00000389048.3:c.290del	p.Pro97ArgfsTer31	p.P97Rfs*31	ENST00000389048	NM_004304.4	97	cCg/cg																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47600949	47600949	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	218	238	0	ENST00000263735.4:c.187G>A	p.Ala63Thr	p.A63T	ENST00000263735	NM_002354.2	63	Gct/Act																																																																															
PMS1	5378	MSKCC	GRCh37	2	190718693	190718693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	132	232	0	ENST00000441310.2:c.851G>A	p.Cys284Tyr	p.C284Y	ENST00000441310	NM_000534.4	284	tGc/tAc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62319683	62319683	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	A			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	154	418	0	ENST00000482936.1:c.1666C>A	p.Leu556Ile	p.L556I	ENST00000482936		556	Ctc/Atc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29440879	29440879	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1485602189		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	91	257	0	ENST00000544604.2:c.744+1G>A		p.X248_splice	ENST00000544604	NM_001206998.1	248																																																																																
TGFBR2	7048	MSKCC	GRCh37	3	30715649	30715649	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	149	323	0	ENST00000359013.4:c.1382T>C	p.Leu461Ser	p.L461S	ENST00000359013	NM_001024847.2	461	tTg/tCg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643839	52643839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	106	258	0	ENST00000394830.3:c.2057G>T	p.Arg686Met	p.R686M	ENST00000394830	NM_018313.4	686	aGg/aTg																																																																															
TP63	8626	MSKCC	GRCh37	3	189590721	189590721	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	178	392	0	ENST00000264731.3:c.1286A>G	p.Gln429Arg	p.Q429R	ENST00000264731	NM_003722.4	429	cAg/cGg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753081	57753081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	121	355	0	ENST00000274289.3:c.935C>T	p.Ala312Val	p.A312V	ENST00000274289	NM_006622.3	312	gCt/gTt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176665386	176665386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	149	289	0	ENST00000439151.2:c.4070C>A	p.Ala1357Asp	p.A1357D	ENST00000439151	NM_022455.4	1357	gCt/gAt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38189075	38189075	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	121	231	1	ENST00000317025.8:c.939del	p.Phe313LeufsTer67	p.F313Lfs*67	ENST00000317025	NM_023034.1	313	ttT/tt																																																																															
CD274	29126	MSKCC	GRCh37	9	5457388	5457388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	151	294	0	ENST00000381577.3:c.362C>T	p.Ala121Val	p.A121V	ENST00000381577	NM_014143.3	121	gCc/gTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399864	139399864	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	53	421	0	ENST00000277541.6:c.4484A>G	p.Gln1495Arg	p.Q1495R	ENST00000277541	NM_017617.3	1495	cAg/cGg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405152	139405152	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1166646402		P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	121	405	0	ENST00000277541.6:c.2693G>A	p.Gly898Asp	p.G898D	ENST00000277541	NM_017617.3	898	gGc/gAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413058	139413058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	132	347	0	ENST00000277541.6:c.1084C>T	p.Pro362Ser	p.P362S	ENST00000277541	NM_017617.3	362	Ccc/Tcc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413975	139413975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	179	342	0	ENST00000277541.6:c.785C>T	p.Pro262Leu	p.P262L	ENST00000277541	NM_017617.3	262	cCa/cTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0070628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	27	287	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0070628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	26	486	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435541	56435541	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	27	516	0	ENST00000407977.2:c.1596del	p.Leu533TrpfsTer167	p.L533Wfs*167	ENST00000407977		532	tcC/tc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670372	134670372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	13	408	0	ENST00000398015.3:c.283G>T	p.Asp95Tyr	p.D95Y	ENST00000398015	NM_004441.4	95	Gac/Tac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118348798	118348798	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs868985556		P-0070638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	207	395	0	ENST00000534358.1:c.3451C>T	p.Arg1151Ter	p.R1151*	ENST00000534358	NM_005933.3	1151	Cga/Tga																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64286797	64286797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	117	285	0	ENST00000370651.3:c.12G>A	p.Met4Ile	p.M4I	ENST00000370651	NM_003463.4	4	atG/atA																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	56	432	2	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	76	370	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	165	588	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	21	428	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108216545	108216545	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587779872		P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	80	305	0	ENST00000278616.4:c.8494C>T	p.Arg2832Cys	p.R2832C	ENST00000278616	NM_000051.3	2832	Cgt/Tgt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	31	478	3	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118918	70118918	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	41	504	0	ENST00000245479.2:c.490C>T	p.Gln164Ter	p.Q164*	ENST00000245479	NM_000346.3	164	Cag/Tag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230571	46230571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	94	398	0	ENST00000334344.6:c.820C>T	p.Arg274Ter	p.R274*	ENST00000334344	NM_152641.2	274	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962849	2962849	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs562372731		P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	52	332	0	ENST00000396946.4:c.2059G>A	p.Ala687Thr	p.A687T	ENST00000396946	NM_032415.4	687	Gcg/Acg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	200	495	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
CASP8	841	MSKCC	GRCh37	2	202141631	202141631	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs17860424		P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	91	397	0	ENST00000358485.4:c.919C>T	p.Arg307Trp	p.R307W	ENST00000358485	NM_001080125.1	307	Cgg/Tgg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	88	513	3	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	360055	360055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	72	402	0	ENST00000262320.3:c.1034del	p.Pro345HisfsTer69	p.P345Hfs*69	ENST00000262320	NM_003502.3	345	cCa/ca																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513282	44513287	+	inframe_deletion	In_Frame_Del	DEL	CCACCG	CCACCG	-	rs769920981		P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	66	367	0	ENST00000291552.4:c.648_653del	p.Gly222_Gly223del	p.G222_G223del	ENST00000291552	NM_006758.2	216	ggCGGTGGt/ggt																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2116002	2116002	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs281875238		P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	69	441	1	ENST00000349721.2:c.3637C>T	p.Arg1213Trp	p.R1213W	ENST00000349721	NM_003070.3	1213	Cgg/Tgg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467504	66467504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	103	436	0	ENST00000273854.3:c.765G>T	p.Leu255Phe	p.L255F	ENST00000273854	NM_004439.5	255	ttG/ttT																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	83	323	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	71	467	0	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	83	528	0	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																															
CASP8	841	MSKCC	GRCh37	2	202149674	202149674	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1225512894		P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	36	444	0	ENST00000358485.4:c.1115G>A	p.Cys372Tyr	p.C372Y	ENST00000358485	NM_001080125.1	372	tGt/tAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5243944	5243944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	48	439	0	ENST00000357368.4:c.1538C>T	p.Ser513Leu	p.S513L	ENST00000357368	NM_002850.3	513	tCg/tTg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805787	32805788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1174402903		P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	42	512	0	ENST00000374899.4:c.223dup	p.Leu75ProfsTer92	p.L75Pfs*92	ENST00000374899	NM_018833.2	75	ctg/cCtg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135777055	135777055	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756514375		P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	66	250	0	ENST00000298552.3:c.2423C>T	p.Ala808Val	p.A808V	ENST00000298552	NM_001162426.1	808	gCg/gTg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797707	32797707	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	42	314	0	ENST00000374899.4:c.1795G>T	p.Asp599Tyr	p.D599Y	ENST00000374899	NM_018833.2	599	Gat/Tat																																																																															
ETV6	2120	MSKCC	GRCh37	12	12037400	12037400	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			756	144	537	0	ENST00000396373.4:c.1031A>G	p.Tyr344Cys	p.Y344C	ENST00000396373	NM_001987.4	344	tAc/tGc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23649273	23649273	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs200048921		P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	84	316	0	ENST00000261584.4:c.109C>T	p.Arg37Cys	p.R37C	ENST00000261584	NM_024675.3	37	Cgt/Tgt																																																																															
EP300	2033	MSKCC	GRCh37	22	41558756	41558757	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	27	309	0	ENST00000263253.7:c.3707dup	p.Asn1236LysfsTer2	p.N1236Kfs*2	ENST00000263253	NM_001429.3	1234	aga/agAa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944258	81944258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750403828		P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	66	394	0	ENST00000359376.3:c.1867C>T	p.Arg623Cys	p.R623C	ENST00000359376	NM_002661.3	623	Cgc/Tgc																																																																															
BLM	641	MSKCC	GRCh37	15	91293056	91293056	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	84	418	1	ENST00000355112.3:c.563del	p.Lys188ArgfsTer17	p.K188Rfs*17	ENST00000355112	NM_000057.2	186	tcA/tc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	43	396	5	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594883	47594883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780075355		P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	83	526	4	ENST00000395288.2:c.1156del	p.Glu386ArgfsTer27	p.E386Rfs*27	ENST00000395288	NM_016506.5	386	Gag/ag																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503884	47503884	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	36	384	0	ENST00000404338.3:c.4444del	p.Gln1482SerfsTer317	p.Q1482Sfs*317	ENST00000404338	NM_004491.4	1480	aCc/ac																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30069020	30069020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	50	272	0	ENST00000331968.5:c.1909C>A	p.Leu637Ile	p.L637I	ENST00000331968	NM_002742.2	637	Ctt/Att																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2491382	2491382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	67	457	0	ENST00000355716.4:c.425C>A	p.Ala142Asp	p.A142D	ENST00000355716	NM_003820.2	142	gCc/gAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006795	47006795	+	5_prime_UTR_variant	5'UTR	SNP	G	G	A			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	63	208	0	ENST00000329236.7:c.-86G>A		p.*29*	ENST00000329236	NM_001204466.1																																																																																	
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62319081	62319081	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	78	568	1	ENST00000482936.1:c.1439G>A	p.Gly480Asp	p.G480D	ENST00000482936		480	gGc/gAc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86659236	86659237	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	50	321	0	ENST00000274376.6:c.1527_1528dup	p.Glu510AlafsTer11	p.E510Afs*11	ENST00000274376	NM_002890.2	509	agc/aGCgc																																																																															
ALB	213	MSKCC	GRCh37	4	74283905	74283905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	105	292	0	ENST00000295897.4:c.1529C>T	p.Pro510Leu	p.P510L	ENST00000295897	NM_000477.5	510	cCa/cTa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69129926	69129926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	75	441	0	ENST00000288368.4:c.4680G>A	p.Met1560Ile	p.M1560I	ENST00000288368	NM_024870.2	1560	atG/atA																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112488	115112488	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs943648458		P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	70	488	0	ENST00000257566.3:c.1252G>A	p.Ala418Thr	p.A418T	ENST00000257566	NM_016569.3	418	Gct/Act																																																																															
JAK3	3718	MSKCC	GRCh37	19	17937614	17937615	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs746238601		P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	81	419	0	ENST00000458235.1:c.3312dup	p.Cys1105ValfsTer2	p.C1105Vfs*2	ENST00000458235	NM_000215.3	1104	-/G																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150933333	150933333	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773137921		P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	97	481	0	ENST00000271640.5:c.2795G>A	p.Arg932Gln	p.R932Q	ENST00000271640	NM_001145415.1	932	cGg/cAg																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690356	33690356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	39	389	0	ENST00000308377.4:c.471G>C	p.Lys157Asn	p.K157N	ENST00000308377	NM_152270.3	157	aaG/aaC																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027794	48027795	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	69	390	0	ENST00000234420.5:c.2677_2678del	p.Leu893AlafsTer6	p.L893Afs*6	ENST00000234420	NM_000179.2	891	aTC/a																																																																															
ROS1	6098	MSKCC	GRCh37	6	117679103	117679103	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	58	377	0	ENST00000368508.3:c.3718T>C	p.Phe1240Leu	p.F1240L	ENST00000368508	NM_002944.2	1240	Ttt/Ctt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729955	30729956	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	94	375	0	ENST00000359013.4:c.1555_1556del	p.Asp519SerfsTer21	p.D519Sfs*21	ENST00000359013	NM_001024847.2	517	ttGAga/ttga																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223394	2223394	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	44	480	0	ENST00000326181.6:c.1006A>G	p.Lys336Glu	p.K336E	ENST00000326181	NM_032271.2	336	Aag/Gag																																																																															
GAB1	2549	MSKCC	GRCh37	4	144381612	144381612	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs771178158		P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	112	389	0	ENST00000262994.4:c.1775T>C	p.Met592Thr	p.M592T	ENST00000262994	NM_002039.3	592	aTg/aCg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36989288	36989288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	50	415	0	ENST00000354822.5:c.47C>T	p.Ala16Val	p.A16V	ENST00000354822	NM_001079668.2	16	gCg/gTg																																																																															
RB1	5925	MSKCC	GRCh37	13	48936983	48936983	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131690863		P-0070643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	305	297	0	ENST00000267163.4:c.751C>T	p.Arg251Ter	p.R251*	ENST00000267163	NM_000321.2	251	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			67	212	467	0	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112103077	112103077	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	50	299	0	ENST00000257430.4:c.412G>C	p.Glu138Gln	p.E138Q	ENST00000257430	NM_000038.5	138	Gag/Cag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249013	55249014	+	protein_altering_variant	In_Frame_Ins	INS	AA	AA	GGGTT			P-0070643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	335	360	0	ENST00000275493.2:c.2311_2312delinsGGGTT	p.Asn771delinsGlyPhe	p.N771delinsGF	ENST00000275493	NM_005228.3	771	AAc/GGGTTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853289	151853289	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0070644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	115	409	0	ENST00000262189.6:c.11812+1G>A		p.X3938_splice	ENST00000262189	NM_170606.2	3938																																																																																
ATXN7	6314	MSKCC	GRCh37	3	63898390	63898390	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs868854400		P-0070644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	24	344	2	ENST00000295900.6:c.116A>C	p.Gln39Pro	p.Q39P	ENST00000295900	NM_000333.3	39	cAg/cCg																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898390	63898391	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCAGCC	rs770364745		P-0070644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	37	349	0	ENST00000295900.6:c.118_119insAGCCGC	p.Gln39_Pro40insGlnPro	p.Q39_P40insQP	ENST00000295900	NM_000333.3	39	cag/caGCAGCCg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138096	64138096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	26	524	0	ENST00000334205.4:c.2019G>T	p.Trp673Cys	p.W673C	ENST00000334205	NM_003942.2	673	tgG/tgT																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978604	70978604	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	59	444	0	ENST00000276594.2:c.1049A>T	p.Tyr350Phe	p.Y350F	ENST00000276594	NM_024504.3	350	tAt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	62	170	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36941130	36941130	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	71	360	0	ENST00000361632.4:c.209A>T	p.Gln70Leu	p.Q70L	ENST00000361632		70	cAg/cTg																																																																															
PARP1	142	MSKCC	GRCh37	1	226578247	226578247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	69	295	0	ENST00000366794.5:c.481G>T	p.Gly161Cys	p.G161C	ENST00000366794	NM_001618.3	161	Ggc/Tgc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781864	3781864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	74	301	0	ENST00000262367.5:c.4803C>G	p.Ser1601Arg	p.S1601R	ENST00000262367	NM_004380.2	1601	agC/agG																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044603	47044604	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TC			P-0070651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	61	426	1	ENST00000329236.7:c.1866_1866+1delinsTC		p.X622_splice	ENST00000329236	NM_001204466.1	622																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53230743	53230801	+	protein_altering_variant	In_Frame_Del	DEL	GGGCCTTTCGTAGACGCCGCTCTTCTTGCACCATGATGAACATCTCCTTATGCACAGCT	GGGCCTTTCGTAGACGCCGCTCTTCTTGCACCATGATGAACATCTCCTTATGCACAGCT	AG			P-0070651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	38	288	1	ENST00000375401.3:c.1992_2050delinsCT	p.Ala665_Ala683del	p.A665_A683del	ENST00000375401	NM_004187.3	664	gcAGCTGTGCATAAGGAGATGTTCATCATGGTGCAAGAAGAGCGGCGTCTACGAAAGGCCCtg/gcCTtg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843736	156843736	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1008878777		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	412	470	0	ENST00000524377.1:c.1162G>A	p.Glu388Lys	p.E388K	ENST00000524377	NM_002529.3	388	Gag/Aag																																																																															
C1orf147	574431	MSKCC	GRCh37	1	206666385	206666385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199747005		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	226	276	0	ENST00000367119.1:c.149C>T	p.Ala50Val	p.A50V	ENST00000367119		50	gCg/gTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70446284	70446284	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	183	299	1	ENST00000373644.4:c.5230del	p.Arg1744GlufsTer18	p.R1744Efs*18	ENST00000373644	NM_030625.2	1742	Aaa/aa																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625363	69625363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	167	341	0	ENST00000334134.2:c.430C>T	p.Arg144Cys	p.R144C	ENST00000334134	NM_005247.2	144	Cgc/Tgc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118347610	118347610	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	202	284	0	ENST00000534358.1:c.3247C>T	p.Arg1083Ter	p.R1083*	ENST00000534358	NM_005933.3	1083	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420111	49420111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775381331		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	185	320	0	ENST00000301067.7:c.15638C>T	p.Thr5213Met	p.T5213M	ENST00000301067	NM_003482.3	5213	aCg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425456	49425456	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs398123716		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	228	450	0	ENST00000301067.7:c.13032del	p.Lys4345AsnfsTer39	p.K4345Nfs*39	ENST00000301067	NM_003482.3	4344	ccC/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	36	425	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495025	56495025	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1181827941		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	257	345	0	ENST00000267101.3:c.3382G>A	p.Gly1128Arg	p.G1128R	ENST00000267101	NM_001982.3	1128	Gga/Aga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	166	226	0	ENST00000380152.3:c.5351del	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422085	81422085	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1006500286		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	151	321	0	ENST00000298171.2:c.61G>A	p.Gly21Arg	p.G21R	ENST00000298171	NM_000369.2	21	Gga/Aga																																																																															
MGA	23269	MSKCC	GRCh37	15	41961399	41961399	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748756129		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	25	295	2	ENST00000219905.7:c.307C>T	p.Arg103Cys	p.R103C	ENST00000219905	NM_001164273.1	103	Cgc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	41989061	41989061	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769469171		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	160	312	0	ENST00000219905.7:c.1853G>A	p.Arg618Gln	p.R618Q	ENST00000219905	NM_001164273.1	618	cGa/cAa																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	184	287	2	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2107170	2107170	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	217	350	0	ENST00000219476.3:c.839T>C	p.Met280Thr	p.M280T	ENST00000219476	NM_000548.3	280	aTg/aCg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781417	3781417	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776549587		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	151	348	0	ENST00000262367.5:c.4948G>A	p.Val1650Ile	p.V1650I	ENST00000262367	NM_004380.2	1650	Gtc/Atc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822585	72822586	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs764626362		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	134	408	0	ENST00000268489.5:c.9589dup	p.Gln3197ProfsTer42	p.Q3197Pfs*42	ENST00000268489	NM_006885.3	3197	cag/cCag																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216092	7216092	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	31	260	0	ENST00000380728.2:c.967C>T	p.Arg323Ter	p.R323*	ENST00000380728		323	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	445	447	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740376	58740376	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1064797099		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	33	262	0	ENST00000305921.3:c.1281G>A	p.Trp427Ter	p.W427*	ENST00000305921	NM_003620.3	427	tgG/tgA																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	231	397	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78796099	78796099	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs201102317		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	28	303	1	ENST00000306801.3:c.989G>A	p.Arg330Gln	p.R330Q	ENST00000306801	NM_020761.2	330	cGg/cAg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45396897	45396897	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs984513669		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	26	243	0	ENST00000262160.6:c.275C>T	p.Thr92Met	p.T92M	ENST00000262160	NM_005901.5	92	aCg/aTg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085894	16085894	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1398902296		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	145	300	0	ENST00000281043.3:c.1070G>A	p.Arg357His	p.R357H	ENST00000281043	NM_005378.4	357	cGt/cAt																																																																															
INHA	3623	MSKCC	GRCh37	2	220437222	220437223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1286117855		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	146	366	0	ENST00000243786.2:c.132dup	p.Ala45ArgfsTer29	p.A45Rfs*29	ENST00000243786	NM_002191.3	42	-/C																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46267849	46267849	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	344	277	0	ENST00000371998.3:c.2615del	p.Asn872IlefsTer20	p.N872Ifs*20	ENST00000371998		870	gtA/gt																																																																															
EP300	2033	MSKCC	GRCh37	22	41533751	41533751	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs926253992		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	142	256	0	ENST00000263253.7:c.1717G>A	p.Glu573Lys	p.E573K	ENST00000263253	NM_001429.3	573	Gaa/Aaa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103754	47103755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC	rs749901643		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	89	329	0	ENST00000409792.3:c.6190_6191dup	p.Asp2064GlufsTer84	p.D2064Efs*84	ENST00000409792	NM_014159.6	2064	gac/gaGAc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499477	89499477	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752560194		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	169	292	0	ENST00000336596.2:c.2647C>T	p.Arg883Trp	p.R883W	ENST00000336596	NM_005233.5	883	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916935	178916935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	68	238	0	ENST00000263967.3:c.322C>T	p.Arg108Cys	p.R108C	ENST00000263967	NM_006218.2	108	Cgt/Tgt																																																																															
KIT	3815	MSKCC	GRCh37	4	55598066	55598066	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201165084		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	74	183	0	ENST00000288135.5:c.2263G>A	p.Ala755Thr	p.A755T	ENST00000288135	NM_000222.2	755	Gcc/Acc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	61	247	0	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs750808726		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	175	381	1	ENST00000261937.6:c.1267dup	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755445139		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	178	374	3	ENST00000261937.6:c.89dup	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005515	150005515	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	333	314	1	ENST00000253339.5:c.710del	p.Pro237HisfsTer6	p.P237Hfs*6	ENST00000253339		237	cCa/ca																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	135	210	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
MYC	4609	MSKCC	GRCh37	8	128750684	128750684	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1294281543		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	47	331	0	ENST00000377970.2:c.221C>T	p.Pro74Leu	p.P74L	ENST00000377970	NM_002467.4	74	cCg/cTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636729	8636729	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	135	257	0	ENST00000356435.5:c.180del	p.Gly61GlufsTer11	p.G61Efs*11	ENST00000356435		60	aaA/aa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	182	311	0	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98240450	98240450	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370354759		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	140	251	0	ENST00000331920.6:c.1234G>A	p.Ala412Thr	p.A412T	ENST00000331920	NM_000264.3	412	Gca/Aca																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139802604	139802604	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780585355		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	187	295	0	ENST00000247668.2:c.449G>A	p.Arg150His	p.R150H	ENST00000247668	NM_021138.3	150	cGc/cAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923086	39923087	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	186	139	0	ENST00000378444.4:c.3621dup	p.Gln1208ThrfsTer8	p.Q1208Tfs*8	ENST00000378444	NM_001123385.1	1207	-/A																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	54	225	0	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432116	121432116	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	133	323	0	ENST00000257555.6:c.863G>C	p.Gly288Ala	p.G288A	ENST00000257555		288	gGg/gCg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731001	162731001	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	309	296	0	ENST00000367921.3:c.856G>A	p.Val286Ile	p.V286I	ENST00000367921	NM_006182.2	286	Gtc/Atc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577359	64577359	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	129	347	1	ENST00000337652.1:c.223C>A	p.Leu75Ile	p.L75I	ENST00000337652	NM_130803.2	75	Ctc/Atc																																																																															
ATM	472	MSKCC	GRCh37	11	108099972	108099972	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	132	191	0	ENST00000278616.4:c.253T>G	p.Ser85Ala	p.S85A	ENST00000278616	NM_000051.3	85	Tca/Gca																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18439808	18439808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	32	218	0	ENST00000266497.5:c.706G>A	p.Glu236Lys	p.E236K	ENST00000266497		236	Gaa/Aaa																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856062	111856062	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	44	334	0	ENST00000341259.2:c.113C>A	p.Ala38Asp	p.A38D	ENST00000341259	NM_005475.2	38	gCc/gAc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28578210	28578210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	65	253	0	ENST00000241453.7:c.2961G>T	p.Gln987His	p.Q987H	ENST00000241453	NM_004119.2	987	caG/caT																																																																															
MGA	23269	MSKCC	GRCh37	15	42003422	42003422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	212	275	0	ENST00000219905.7:c.2959G>T	p.Gly987Cys	p.G987C	ENST00000219905	NM_001164273.1	987	Ggc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42042694	42042694	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1199135517		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	197	341	0	ENST00000219905.7:c.6889A>G	p.Thr2297Ala	p.T2297A	ENST00000219905	NM_001164273.1	2297	Act/Gct																																																																															
USP8	9101	MSKCC	GRCh37	15	50785013	50785013	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	15	142	0	ENST00000307179.4:c.2350A>G	p.Asn784Asp	p.N784D	ENST00000307179		784	Aat/Gat																																																																															
CDH1	999	MSKCC	GRCh37	16	68849520	68849520	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782113		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	226	317	0	ENST00000261769.5:c.1423G>A	p.Val475Met	p.V475M	ENST00000261769	NM_004360.3	475	Gtg/Atg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347570	89347570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771309106		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	200	320	0	ENST00000301030.4:c.5380G>A	p.Asp1794Asn	p.D1794N	ENST00000301030	NM_001256183.1	1794	Gac/Aac																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347930	89347930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	25	301	0	ENST00000301030.4:c.5020G>A	p.Ala1674Thr	p.A1674T	ENST00000301030	NM_001256183.1	1674	Gca/Aca																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453357	40453357	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777748961		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	201	312	1	ENST00000345506.4:c.1054G>A	p.Val352Ile	p.V352I	ENST00000345506	NM_003152.3	352	Gta/Ata																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554437	63554437	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	36	347	0	ENST00000307078.5:c.302G>T	p.Arg101Met	p.R101M	ENST00000307078	NM_004655.3	101	aGg/aTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955050	17955050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	45	346	0	ENST00000458235.1:c.177G>T	p.Lys59Asn	p.K59N	ENST00000458235	NM_000215.3	59	aaG/aaT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211811	36211811	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	209	346	0	ENST00000222270.7:c.1562T>C	p.Leu521Pro	p.L521P	ENST00000222270	NM_014727.1	521	cTg/cCg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663288	227663288	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	205	290	1	ENST00000305123.5:c.167A>C	p.Lys56Thr	p.K56T	ENST00000305123	NM_005544.2	56	aAg/aCg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46256480	46256480	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749282486		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	342	302	0	ENST00000371998.3:c.708G>A	p.Met236Ile	p.M236I	ENST00000371998		236	atG/atA																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121356	29121356	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	142	232	0	ENST00000328354.6:c.320-1G>A		p.X107_splice	ENST00000328354	NM_007194.3	107																																																																																
ZNRF3	84133	MSKCC	GRCh37	22	29439348	29439348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	31	293	0	ENST00000544604.2:c.563C>T	p.Ala188Val	p.A188V	ENST00000544604	NM_001206998.1	188	gCc/gTc																																																																															
EP300	2033	MSKCC	GRCh37	22	41573077	41573077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	206	407	0	ENST00000263253.7:c.5362C>A	p.Leu1788Ile	p.L1788I	ENST00000263253	NM_001429.3	1788	Ctc/Atc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47139530	47139530	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367601805		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	92	258	0	ENST00000409792.3:c.5057G>A	p.Arg1686Gln	p.R1686Q	ENST00000409792	NM_014159.6	1686	cGg/cAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627795	187627795	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367960445		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	161	326	0	ENST00000441802.2:c.3187G>A	p.Ala1063Thr	p.A1063T	ENST00000441802	NM_005245.3	1063	Gcc/Acc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111663	56111663	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	77	318	0	ENST00000399503.3:c.263C>A	p.Ser88Ter	p.S88*	ENST00000399503	NM_005921.1	88	tCg/tAg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751591	57751591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	158	222	0	ENST00000274289.3:c.1400C>T	p.Thr467Ile	p.T467I	ENST00000274289	NM_006622.3	467	aCc/aTc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056194	26056195	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	210	387	0	ENST00000343677.2:c.462_463del	p.Pro155GlufsTer17	p.P155Efs*17	ENST00000343677	NM_005319.3	154	acACcg/accg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005467	150005467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	395	313	0	ENST00000253339.5:c.758G>A	p.Gly253Asp	p.G253D	ENST00000253339		253	gGc/gAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099403	157099405	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-	rs746846909		P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	369	440	15	ENST00000346085.5:c.360_362del	p.Gln131del	p.Q131del	ENST00000346085	NM_020732.3	114	CAG/-																																																																															
EZH2	2146	MSKCC	GRCh37	7	148523545	148523545	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	118	196	0	ENST00000320356.2:c.907+1G>A		p.X303_splice	ENST00000320356	NM_004456.4	303																																																																																
SMARCA2	6595	MSKCC	GRCh37	9	2039501	2039501	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	253	329	0	ENST00000349721.2:c.391C>A	p.Pro131Thr	p.P131T	ENST00000349721	NM_003070.3	131	Cca/Aca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465482	8465482	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	28	207	0	ENST00000356435.5:c.3698T>C	p.Met1233Thr	p.M1233T	ENST00000356435		1233	aTg/aCg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781421	3781421	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	28	351	0	ENST00000262367.5:c.4944del	p.Ile1649SerfsTer95	p.I1649Sfs*95	ENST00000262367	NM_004380.2	1648	ccC/cc																																																																															
NADK	65220	MSKCC	GRCh37	1	1687734	1687734	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	290	457	1	ENST00000341426.5:c.548del	p.Gly183GlufsTer30	p.G183Efs*30	ENST00000341426	NM_023018.4	183	gGa/ga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11317061	11317061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	316	500	1	ENST00000361445.4:c.433G>A	p.Val145Met	p.V145M	ENST00000361445	NM_004958.3	145	Gtg/Atg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs769210858		P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	240	445	2	ENST00000361632.4:c.1404del	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120483245	120483245	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61755044		P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	267	428	0	ENST00000256646.2:c.3116C>T	p.Thr1039Met	p.T1039M	ENST00000256646	NM_024408.3	1039	aCg/aTg																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246490641	246490641	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-			P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	205	259	1	ENST00000388985.4:c.395-2del		p.X132_splice	ENST00000388985		132																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118343550	118343550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	329	515	0	ENST00000534358.1:c.1676C>T	p.Ser559Leu	p.S559L	ENST00000534358	NM_005933.3	559	tCg/tTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444534	49444534	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770488222		P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	272	568	0	ENST00000301067.7:c.2837C>T	p.Ala946Val	p.A946V	ENST00000301067	NM_003482.3	946	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445203	49445203	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs549710712		P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	360	662	0	ENST00000301067.7:c.2263C>T	p.Arg755Trp	p.R755W	ENST00000301067	NM_003482.3	755	Cgg/Tgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913692	32913692	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786202543		P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	237	386	0	ENST00000380152.3:c.5200G>A	p.Glu1734Lys	p.E1734K	ENST00000380152		1734	Gaa/Aaa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	238	320	5	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061192	38061192	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	279	500	0	ENST00000250448.2:c.797T>G	p.Phe266Cys	p.F266C	ENST00000250448	NM_004496.3	266	tTc/tGc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696601	47696601	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	222	363	0	ENST00000347630.2:c.347C>G	p.Ala116Gly	p.A116G	ENST00000347630	NM_001007230.1	116	gCt/gGt																																																																															
MSI2	124540	MSKCC	GRCh37	17	55752459	55752459	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773391520		P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	190	404	0	ENST00000284073.2:c.917C>T	p.Pro306Leu	p.P306L	ENST00000284073	NM_138962.2	306	cCg/cTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603021	48603021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	221	294	0	ENST00000342988.3:c.1322G>A	p.Arg441His	p.R441H	ENST00000342988	NM_005359.5	441	cGt/cAt																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792753	33792761	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGCGGCG	AGGGCGGCG	GGTGCGAG			P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	46	408	0	ENST00000498907.2:c.561_568delinsTCGCACC	p.Pro188ArgfsTer130	p.P188Rfs*130	ENST00000498907	NM_004364.3	187	cCGCCGCCCTcg/cCTCGCACCcg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25994392	25994392	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	253	391	0	ENST00000435504.4:c.421C>T	p.Gln141Ter	p.Q141*	ENST00000435504		141	Cag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103716	47103716	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs981018402		P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	242	446	0	ENST00000409792.3:c.6230G>A	p.Arg2077Gln	p.R2077Q	ENST00000409792	NM_014159.6	2077	cGa/cAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189412	56189412	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	228	391	1	ENST00000399503.3:c.4444C>T	p.Arg1482Ter	p.R1482*	ENST00000399503	NM_005921.1	1482	Cga/Tga																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	395	315	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555027	106555027	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775380311		P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	262	446	0	ENST00000369096.4:c.2144C>T	p.Ala715Val	p.A715V	ENST00000369096	NM_001198.3	715	gCg/gTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959240	2959240	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148354898		P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	359	422	1	ENST00000396946.4:c.2276G>A	p.Arg759Gln	p.R759Q	ENST00000396946	NM_032415.4	759	cGg/cAg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	152	375	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729639	41729639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	225	589	0	ENST00000242208.4:c.890C>T	p.Ala297Val	p.A297V	ENST00000242208	NM_002192.2	297	gCc/gTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255602	16255602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	262	450	0	ENST00000375759.3:c.2867G>A	p.Gly956Asp	p.G956D	ENST00000375759	NM_015001.2	956	gGc/gAc																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366986	40366987	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	267	585	0	ENST00000397332.2:c.210dup	p.Thr71HisfsTer53	p.T71Hfs*53	ENST00000397332	NM_001033082.2	70	-/C																																																																															
TET1	80312	MSKCC	GRCh37	10	70411651	70411651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	223	345	0	ENST00000373644.4:c.4325C>T	p.Ala1442Val	p.A1442V	ENST00000373644	NM_030625.2	1442	gCa/gTa																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202103	67202105	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs757063422		P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	261	518	0	ENST00000312629.5:c.1208_1210del	p.Ser403del	p.S403del	ENST00000312629	NM_003952.2	402	ttCTCc/ttc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118360532	118360532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs551144488		P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	266	351	0	ENST00000534358.1:c.4505G>A	p.Arg1502Gln	p.R1502Q	ENST00000534358	NM_005933.3	1502	cGa/cAa																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023070	33023070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	96	508	0	ENST00000300177.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000300177	NM_001191322.1	60	cGg/cAg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749295	43749295	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	246	398	0	ENST00000382044.4:c.1511A>T	p.Asn504Ile	p.N504I	ENST00000382044	NM_001141980.1	504	aAt/aTt																																																																															
CD276	80381	MSKCC	GRCh37	15	73995311	73995311	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	20	162	0	ENST00000318443.5:c.617G>T	p.Ser206Ile	p.S206I	ENST00000318443	NM_001024736.1	206	aGc/aTc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225143	2225143	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs759786034		P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	182	514	0	ENST00000326181.6:c.1378A>G	p.Thr460Ala	p.T460A	ENST00000326181	NM_032271.2	460	Acc/Gcc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830824	72830825	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	268	514	0	ENST00000268489.5:c.5756_5757del	p.Lys1919ArgfsTer9	p.K1919Rfs*9	ENST00000268489	NM_006885.3	1919	aAA/a																																																																															
NF1	4763	MSKCC	GRCh37	17	29562669	29562669	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199474765		P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	190	350	0	ENST00000358273.4:c.3749G>A	p.Arg1250Gln	p.R1250Q	ENST00000358273	NM_001042492.2	1250	cGg/cAg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175809	24175809	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1231539032		P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	267	540	0	ENST00000263121.7:c.1037C>T	p.Ala346Val	p.A346V	ENST00000263121	NM_003073.3	346	gCg/gTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295432	1295432	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	110	535	0				ENST00000310581	NM_198253.2																																																																																	
FLT4	2324	MSKCC	GRCh37	5	180046104	180046104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	127	338	0	ENST00000261937.6:c.2767del	p.Leu923SerfsTer3	p.L923Sfs*3	ENST00000261937	NM_182925.4	923	Ctc/tc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265418	152265419	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	170	460	0	ENST00000206249.3:c.874dup	p.Trp292LeufsTer11	p.W292Lfs*11	ENST00000206249	NM_000125.3	291	ctt/cTtt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845831	151845831	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	496	455	0	ENST00000262189.6:c.13181C>A	p.Pro4394His	p.P4394H	ENST00000262189	NM_170606.2	4394	cCt/cAt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683436	88683436	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1179044384		P-0070655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			55	15	67	0	ENST00000372037.3:c.1559C>T	p.Thr520Met	p.T520M	ENST00000372037	NM_004329.2	520	aCg/aTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0070674-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	180	483	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295773	212295773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1299031105		P-0070674-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	136	280	2	ENST00000342788.4:c.2540G>A	p.Arg847His	p.R847H	ENST00000342788	NM_005235.2	847	cGt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557891	187557891	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200242253		P-0070674-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	88	412	1	ENST00000441802.2:c.3820G>A	p.Val1274Ile	p.V1274I	ENST00000441802	NM_005245.3	1274	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070674-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	192	431	0	ENST00000269305.4:c.596del	p.Gly199GlufsTer48	p.G199Efs*48	ENST00000269305	NM_001126112.2	199	gGa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070674-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	159	235	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0070675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			754	186	490	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
APC	324	MSKCC	GRCh37	5	112175349	112175350	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0070675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	126	339	0	ENST00000257430.4:c.4058_4059del	p.Glu1353ValfsTer21	p.E1353Vfs*21	ENST00000257430	NM_000038.5	1353	gAA/g																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711296	114711296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	56	336	0	ENST00000543371.1:c.311C>T	p.Pro104Leu	p.P104L	ENST00000543371	NM_001198531.1	104	cCc/cTc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38139044	38139044	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	48	297	0	ENST00000317025.8:c.3559C>T	p.Arg1187Ter	p.R1187*	ENST00000317025	NM_023034.1	1187	Cga/Tga																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2056832	2056832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	50	420	0	ENST00000349721.2:c.1334G>A	p.Arg445His	p.R445H	ENST00000349721	NM_003070.3	445	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101612	27101612	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	103	422	0	ENST00000324856.7:c.4899del	p.Met1634Ter	p.M1634*	ENST00000324856	NM_006015.4	1632	Ccc/cc																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599234	28599234	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	88	409	0	ENST00000253063.3:c.685del	p.Gln229ArgfsTer18	p.Q229Rfs*18	ENST00000253063	NM_031459.4	227	gCc/gc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798340	45798340	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	92	504	0	ENST00000372115.3:c.554del	p.Gly185AlafsTer41	p.G185Afs*41	ENST00000372115	NM_001048171.1	185	gGc/gc																																																																															
FH	2271	MSKCC	GRCh37	1	241680541	241680541	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782207		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	57	243	0	ENST00000366560.3:c.208G>A	p.Ala70Thr	p.A70T	ENST00000366560	NM_000143.3	70	Gcc/Acc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	78	374	1	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			78	16	89	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	65	273	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	464397	464397	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746045026		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	62	269	0	ENST00000399788.2:c.797G>A	p.Arg266Gln	p.R266Q	ENST00000399788	NM_001042603.1	266	cGa/cAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441816	49441816	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	94	310	0	ENST00000301067.7:c.4168del	p.Ala1390GlnfsTer27	p.A1390Qfs*27	ENST00000301067	NM_003482.3	1390	Gca/ca																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	92	367	0	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233089	69233090	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs746910913		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	61	351	0	ENST00000462284.1:c.961dup	p.Leu321ProfsTer13	p.L321Pfs*13	ENST00000462284	NM_002392.5	318	-/C																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112325	115112325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	61	391	0	ENST00000257566.3:c.1415C>T	p.Ala472Val	p.A472V	ENST00000257566	NM_016569.3	472	gCg/gTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133241948	133241948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	99	358	0	ENST00000320574.5:c.2408C>T	p.Ser803Leu	p.S803L	ENST00000320574	NM_006231.2	803	tCg/tTg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28626731	28626731	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142392340		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	74	252	0	ENST00000241453.7:c.565G>A	p.Val189Ile	p.V189I	ENST00000241453	NM_004119.2	189	Gtt/Att																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49280993	49280993	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200402832		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	59	330	0	ENST00000282018.3:c.40G>A	p.Val14Ile	p.V14I	ENST00000282018	NM_020377.2	14	Gta/Ata																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	84	342	0	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467855	99467856	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	79	299	0	ENST00000268035.6:c.2732_2733dup	p.Gly912LeufsTer26	p.G912Lfs*26	ENST00000268035	NM_000875.3	908	-/TC																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500577	99500577	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759627092		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	100	387	0	ENST00000268035.6:c.4010G>A	p.Arg1337His	p.R1337H	ENST00000268035	NM_000875.3	1337	cGc/cAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	339552	339552	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777185421		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	79	299	0	ENST00000262320.3:c.2350G>A	p.Val784Ile	p.V784I	ENST00000262320	NM_003502.3	784	Gtt/Att																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354324	354324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200716081		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	89	301	1	ENST00000262320.3:c.1234C>T	p.Arg412Trp	p.R412W	ENST00000262320	NM_003502.3	412	Cgg/Tgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822330	72822330	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756436707		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	93	468	0	ENST00000268489.5:c.9845C>T	p.Ala3282Val	p.A3282V	ENST00000268489	NM_006885.3	3282	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	97	316	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690456	33690456	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770564755		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	104	361	0	ENST00000308377.4:c.371G>A	p.Arg124His	p.R124H	ENST00000308377	NM_152270.3	124	cGc/cAc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	94	439	0	ENST00000447079.4:c.4382del	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	71	326	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	231	435	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59821931	59821931	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764803896		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	60	237	0	ENST00000259008.2:c.2119C>T	p.Arg707Cys	p.R707C	ENST00000259008	NM_032043.2	707	Cgt/Tgt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117594	70117594	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	94	431	1	ENST00000245479.2:c.66del	p.Ser23AlafsTer38	p.S23Afs*38	ENST00000245479	NM_000346.3	21	gCc/gc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	57	309	0	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78914338	78914338	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1484629953		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	97	304	0	ENST00000306801.3:c.2962C>T	p.Arg988Trp	p.R988W	ENST00000306801	NM_020761.2	988	Cgg/Tgg																																																																															
YES1	7525	MSKCC	GRCh37	18	756622	756622	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749885349		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	95	375	0	ENST00000314574.4:c.206C>T	p.Thr69Met	p.T69M	ENST00000314574	NM_005433.3	69	aCg/aTg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39647367	39647367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373107502		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	63	277	0	ENST00000262039.4:c.2539C>T	p.Arg847Cys	p.R847C	ENST00000262039	NM_002647.2	847	Cgc/Tgc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4110607	4110607	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1370559062		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	109	365	2	ENST00000262948.5:c.350G>A	p.Arg117His	p.R117H	ENST00000262948	NM_030662.3	117	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210574	5210574	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771577284		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	109	447	0	ENST00000357368.4:c.5393G>A	p.Arg1798His	p.R1798H	ENST00000357368	NM_002850.3	1798	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212185	5212185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	100	419	0	ENST00000357368.4:c.4846G>A	p.Asp1616Asn	p.D1616N	ENST00000357368	NM_002850.3	1616	Gat/Aat																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272237	15272237	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs189252435		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	58	357	2	ENST00000263388.2:c.6202G>A	p.Gly2068Arg	p.G2068R	ENST00000263388	NM_000435.2	2068	Ggg/Agg																																																																															
CIC	23152	MSKCC	GRCh37	19	42791339	42791339	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	99	412	0	ENST00000575354.2:c.404del	p.Pro135GlnfsTer70	p.P135Qfs*70	ENST00000575354	NM_015125.3	133	ggC/gg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47698180	47698180	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs63751411		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	45	278	0	ENST00000233146.2:c.1738G>T	p.Glu580Ter	p.E580*	ENST00000233146	NM_000251.2	580	Gaa/Taa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026524	48026524	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369456858		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	76	373	0	ENST00000234420.5:c.1402C>T	p.Arg468Cys	p.R468C	ENST00000234420	NM_000179.2	468	Cgt/Tgt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212576801	212576801	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	57	204	0	ENST00000342788.4:c.1098G>T	p.Leu366Phe	p.L366F	ENST00000342788	NM_005235.2	366	ttG/ttT																																																																															
CUL3	8452	MSKCC	GRCh37	2	225342967	225342967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	52	276	0	ENST00000264414.4:c.2125C>T	p.Arg709Trp	p.R709W	ENST00000264414	NM_003590.4	709	Cgg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980745	40980745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	95	347	0	ENST00000373198.4:c.1741C>T	p.Arg581Trp	p.R581W	ENST00000373198	NM_133170.3	581	Cgg/Tgg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175869	24175869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	72	293	0	ENST00000263121.7:c.1097G>A	p.Arg366His	p.R366H	ENST00000263121	NM_003073.3	366	cGc/cAc																																																																															
NF2	4771	MSKCC	GRCh37	22	30069405	30069405	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763826793		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	104	392	0	ENST00000338641.4:c.1270C>T	p.Arg424Cys	p.R424C	ENST00000338641	NM_000268.3	424	Cgc/Tgc																																																																															
BCL6	604	MSKCC	GRCh37	3	187447621	187447621	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778230721		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	116	488	0	ENST00000232014.4:c.572C>T	p.Pro191Leu	p.P191L	ENST00000232014	NM_001130845.1	191	cCg/cTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	54	252	0	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143181675	143181675	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377427325		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	56	262	0	ENST00000262992.4:c.658G>A	p.Gly220Arg	p.G220R	ENST00000262992	NM_001101669.1	220	Gga/Aga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187519186	187519186	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780242823		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	84	275	0	ENST00000441802.2:c.12197C>T	p.Thr4066Met	p.T4066M	ENST00000441802	NM_005245.3	4066	aCg/aTg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	83	399	8	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	53	254	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564511	86564511	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	97	446	2	ENST00000274376.6:c.248del	p.Gly83GlufsTer4	p.G83Efs*4	ENST00000274376	NM_002890.2	81	ctG/ct																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149503887	149503887	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758280032		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	87	308	0	ENST00000261799.4:c.1949C>T	p.Ser650Leu	p.S650L	ENST00000261799	NM_002609.3	650	tCg/tTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176719015	176719015	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1321310131		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	80	317	0	ENST00000439151.2:c.6319C>T	p.Arg2107Cys	p.R2107C	ENST00000439151	NM_022455.4	2107	Cgc/Tgc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910563	29910563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	40	200	0	ENST00000376809.5:c.103T>C	p.Ser35Pro	p.S35P	ENST00000376809	NM_002116.7	35	Tcc/Ccc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803483	32803483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs536291251		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	94	348	0	ENST00000374899.4:c.676C>T	p.Arg226Trp	p.R226W	ENST00000374899	NM_018833.2	226	Cgg/Tgg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553602	106553602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	104	401	0	ENST00000369096.4:c.1567G>A	p.Ala523Thr	p.A523T	ENST00000369096	NM_001198.3	523	Gcc/Acc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001524	150001524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	63	292	0	ENST00000253339.5:c.2080C>T	p.Arg694Cys	p.R694C	ENST00000253339		694	Cgt/Tgt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455075	50455075	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	68	251	0	ENST00000331340.3:c.622C>T	p.Arg208Ter	p.R208*	ENST00000331340	NM_006060.4	208	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879429	151879429	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140631041		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	82	381	0	ENST00000262189.6:c.5516C>T	p.Thr1839Met	p.T1839M	ENST00000262189	NM_170606.2	1839	aCg/aTg																																																																															
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	49	317	0	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGG			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	76	311	0	ENST00000220592.5:c.1804_1806dup	p.Pro602dup	p.P602dup	ENST00000220592	NM_012154.3	602	-/CCC																																																																															
RXRA	6256	MSKCC	GRCh37	9	137309037	137309037	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs537231520		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	90	320	0	ENST00000481739.1:c.644G>A	p.Arg215Gln	p.R215Q	ENST00000481739	NM_002957.4	215	cGg/cAg																																																																															
MED12	9968	MSKCC	GRCh37	X	70342687	70342687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	78	166	0	ENST00000374080.3:c.1448G>A	p.Arg483Gln	p.R483Q	ENST00000374080		483	cGa/cAa																																																																															
CTR9	9646	MSKCC	GRCh37	11	10800588	10800588	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	64	294	0	ENST00000361367.2:c.3458C>A	p.Pro1153Gln	p.P1153Q	ENST00000361367	NM_014633.3	1153	cCa/cAa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572248	64572248	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778728934		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	91	454	0	ENST00000337652.1:c.1406C>T	p.Ala469Val	p.A469V	ENST00000337652	NM_130803.2	469	gCg/gTg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633688	69633688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	54	229	0	ENST00000334134.2:c.14G>T	p.Trp5Leu	p.W5L	ENST00000334134	NM_005247.2	5	tGg/tTg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21636420	21636421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	66	285	0	ENST00000421138.2:c.589dup	p.Ser197LysfsTer13	p.S197Kfs*13	ENST00000421138		197	agc/aAgc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56486818	56486818	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	96	330	0	ENST00000267101.3:c.1232T>C	p.Val411Ala	p.V411A	ENST00000267101	NM_001982.3	411	gTt/gCt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856427	111856427	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1254346988		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	84	383	0	ENST00000341259.2:c.478G>A	p.Ala160Thr	p.A160T	ENST00000341259	NM_005475.2	160	Gct/Act																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436144	110436144	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs770091673		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	99	436	0	ENST00000375856.3:c.2257A>G	p.Met753Val	p.M753V	ENST00000375856	NM_003749.2	753	Atg/Gtg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222523	2222523	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs750035555		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	91	405	0	ENST00000326181.6:c.722del	p.Pro241ArgfsTer5	p.P241Rfs*5	ENST00000326181	NM_032271.2	239	tgC/tg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640500	3640500	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs561815282		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	112	457	0	ENST00000294008.3:c.3139G>A	p.Gly1047Arg	p.G1047R	ENST00000294008	NM_032444.2	1047	Ggg/Agg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5260821	5260821	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1405759365		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	101	318	1	ENST00000357368.4:c.590T>C	p.Ile197Thr	p.I197T	ENST00000357368	NM_002850.3	197	aTt/aCt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218838	36218838	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	50	411	0	ENST00000222270.7:c.4449G>T	p.Glu1483Asp	p.E1483D	ENST00000222270	NM_014727.1	1483	gaG/gaT																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503613	47503613	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	94	296	0	ENST00000404338.3:c.4168C>A	p.Leu1390Ile	p.L1390I	ENST00000404338	NM_004491.4	1390	Ctc/Atc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716350	52716350	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	89	328	0	ENST00000322088.6:c.794A>T	p.Asp265Val	p.D265V	ENST00000322088	NM_014225.5	265	gAc/gTc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25466847	25466847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	79	373	0	ENST00000264709.3:c.1856C>A	p.Pro619His	p.P619H	ENST00000264709	NM_175629.2	619	cCt/cAt																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128029016	128029016	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139049289		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	72	294	0	ENST00000285398.2:c.1841C>T	p.Ser614Leu	p.S614L	ENST00000285398	NM_000122.1	614	tCg/tTg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44520572	44520572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	88	274	0	ENST00000291552.4:c.190G>A	p.Gly64Ser	p.G64S	ENST00000291552	NM_006758.2	64	Ggt/Agt																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29440813	29440813	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757477292		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	85	278	0	ENST00000544604.2:c.679G>A	p.Val227Ile	p.V227I	ENST00000544604	NM_001206998.1	227	Gtc/Atc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919239	178919240	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	53	233	0	ENST00000263967.3:c.727_728del	p.Val243PhefsTer15	p.V243Ffs*15	ENST00000263967	NM_006218.2	242	TGt/t																																																																															
ALB	213	MSKCC	GRCh37	4	74283902	74283902	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200002649		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	81	274	0	ENST00000295897.4:c.1526G>A	p.Arg509Gln	p.R509Q	ENST00000295897	NM_000477.5	509	cGa/cAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542684	187542684	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749494325		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	78	345	0	ENST00000441802.2:c.5056G>A	p.Val1686Ile	p.V1686I	ENST00000441802	NM_005245.3	1686	Gtt/Att																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876578	35876578	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	79	258	0	ENST00000303115.3:c.1373del	p.Asn458ThrfsTer5	p.N458Tfs*5	ENST00000303115	NM_002185.3	457	cAa/ca																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323346	31323346	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	38	241	0	ENST00000412585.2:c.643del	p.His215ThrfsTer11	p.H215Tfs*11	ENST00000412585	NM_005514.6	215	Cac/ac																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138201388	138201388	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	87	294	1	ENST00000237289.4:c.2087T>C	p.Leu696Pro	p.L696P	ENST00000237289	NM_001270507.1	696	cTg/cCg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273044	55273044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	96	394	0	ENST00000275493.2:c.3367C>T	p.Pro1123Ser	p.P1123S	ENST00000275493	NM_005228.3	1123	Cca/Tca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845361	151845361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	83	347	0	ENST00000262189.6:c.13651G>T	p.Gly4551Cys	p.G4551C	ENST00000262189	NM_170606.2	4551	Ggt/Tgt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141551289	141551289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1455738581		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	121	368	0	ENST00000220592.5:c.2008G>A	p.Gly670Ser	p.G670S	ENST00000220592	NM_012154.3	670	Ggt/Agt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8331727	8331727	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	98	329	0	ENST00000356435.5:c.5389T>C	p.Ser1797Pro	p.S1797P	ENST00000356435		1797	Tcc/Ccc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137323780	137323780	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	92	352	0	ENST00000481739.1:c.1073G>T	p.Arg358Leu	p.R358L	ENST00000481739	NM_002957.4	358	cGg/cTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395038	139395038	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772463545		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	81	307	0	ENST00000277541.6:c.5900C>T	p.Ala1967Val	p.A1967V	ENST00000277541	NM_017617.3	1967	gCg/gTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139403327	139403327	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	97	353	0	ENST00000277541.6:c.3166T>C	p.Cys1056Arg	p.C1056R	ENST00000277541	NM_017617.3	1056	Tgc/Cgc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934294	39934294	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778099		P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	116	164	0	ENST00000378444.4:c.305G>A	p.Arg102Gln	p.R102Q	ENST00000378444	NM_001123385.1	102	cGg/cAg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44919389	44919389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			41	18	76	0	ENST00000377967.4:c.1317C>G	p.Asn439Lys	p.N439K	ENST00000377967	NM_021140.2	439	aaC/aaG																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346415	89346415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070716-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	77	476	0	ENST00000301030.4:c.6535del	p.Val2179PhefsTer4	p.V2179Ffs*4	ENST00000301030	NM_001256183.1	2179	Gtt/tt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5211674	5211674	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1351895585		P-0070717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	292	425	0	ENST00000357368.4:c.5161C>T	p.Arg1721Trp	p.R1721W	ENST00000357368	NM_002850.3	1721	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0070717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	360	495	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0070717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	197	234	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0070717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	264	404	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0070719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	278	402	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
IDH2	3418	MSKCC	GRCh37	15	90630476	90630476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	105	517	1	ENST00000330062.3:c.835G>A	p.Asp279Asn	p.D279N	ENST00000330062	NM_002168.2	279	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0070719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	225	606	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0070719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	245	471	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001312	150001312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	96	461	0	ENST00000253339.5:c.2292G>T	p.Trp764Cys	p.W764C	ENST00000253339		764	tgG/tgT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375801	118375801	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	157	637	0	ENST00000534358.1:c.9194C>G	p.Ala3065Gly	p.A3065G	ENST00000534358	NM_005933.3	3065	gCa/gGa																																																																															
APC	324	MSKCC	GRCh37	5	112177925	112177925	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	204	502	0	ENST00000257430.4:c.6634C>G	p.Gln2212Glu	p.Q2212E	ENST00000257430	NM_000038.5	2212	Caa/Gaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0070720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	77	303	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226159	2226159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	38	553	0	ENST00000326181.6:c.1856C>T	p.Ala619Val	p.A619V	ENST00000326181	NM_032271.2	619	gCa/gTa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801506	1801506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	28	446	0	ENST00000260795.2:c.412G>A	p.Glu138Lys	p.E138K	ENST00000260795		138	Gag/Aag																																																																															
BTK	695	MSKCC	GRCh37	X	100611914	100611914	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	32	385	0	ENST00000308731.7:c.1207A>T	p.Thr403Ser	p.T403S	ENST00000308731	NM_000061.2	403	Acc/Tcc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039596	47039628	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCCTCCTCCCACAGGAGGCAGCCCAGCTGCTG	CCCCTCCTCCCACAGGAGGCAGCCCAGCTGCTG	-			P-0070720-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	51	470	0	ENST00000329236.7:c.829-14_847del		p.X277_splice	ENST00000329236	NM_001204466.1	277																																																																																
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0064518-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			784	95	337	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0064518-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	39	207	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974683	21974723	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCCTCCGACCGTAACTATTCGGTGCGTTGGGCAGCGCCC	CGGCCTCCGACCGTAACTATTCGGTGCGTTGGGCAGCGCCC	-			P-0064518-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			717	49	332	0	ENST00000304494.5:c.104_144del	p.Gly35AspfsTer71	p.G35Dfs*71	ENST00000304494	NM_000077.4	35	gGGGCGCTGCCCAACGCACCGAATAGTTACGGTCGGAGGCCG/g																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28929495		P-0070109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			564	402	503	0	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241678	55241678	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs397517085		P-0070109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			662	472	593	0	ENST00000275493.2:c.2126A>C	p.Glu709Ala	p.E709A	ENST00000275493	NM_005228.3	709	gAa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			197	250	476	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790830	89790830	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			293	360	620	0	ENST00000336032.3:c.217C>G	p.Arg73Gly	p.R73G	ENST00000336032	NM_006813.2	73	Cgc/Ggc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37061805	37061805	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			325	290	457	0	ENST00000231790.2:c.889G>C	p.Glu297Gln	p.E297Q	ENST00000231790	NM_000249.3	297	Gaa/Caa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030469	47030469	+	intron_variant	Intron	SNP	C	C	T			P-0070109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	227	501	0	ENST00000329236.7:c.201+1572C>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
NF2	4771	MSKCC	GRCh37	22	30051598	30051598	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			174	131	401	0	ENST00000338641.4:c.532C>T	p.Gln178Ter	p.Q178*	ENST00000338641	NM_000268.3	178	Cag/Tag																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239382	31239382	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs281860433		P-0070109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			158	35	112	0	ENST00000376228.5:c.337G>A	p.Glu113Lys	p.E113K	ENST00000376228	NM_002117.5	113	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259481	55259481	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			580	401	516	0	ENST00000275493.2:c.2539A>G	p.Thr847Ala	p.T847A	ENST00000275493	NM_005228.3	847	Aca/Gca																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551754	150551754	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1156	371	556	0	ENST00000369026.2:c.253G>C	p.Glu85Gln	p.E85Q	ENST00000369026	NM_021960.4	85	Gag/Cag																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119631652	119631652	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			396	89	352	0	ENST00000316626.5:c.614del	p.Lys205SerfsTer23	p.K205Sfs*23	ENST00000316626		205	aAg/ag																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750590	41750590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			415	124	487	0	ENST00000226382.2:c.38C>T	p.Ala13Val	p.A13V	ENST00000226382	NM_003924.3	13	gCc/gTc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362196	40362196	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			639	169	558	0	ENST00000293328.3:c.1899T>G	p.Phe633Leu	p.F633L	ENST00000293328	NM_012448.3	633	ttT/ttG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0070274-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			513	69	450	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505312	25505312	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs767055283		P-0070274-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			528	76	446	0	ENST00000264709.3:c.446C>T	p.Ala149Val	p.A149V	ENST00000264709	NM_175629.2	149	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070274-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			345	59	272	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448401	49448401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070274-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	77	451	0	ENST00000301067.7:c.310G>T	p.Gly104Trp	p.G104W	ENST00000301067	NM_003482.3	104	Ggg/Tgg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46715565	46715713	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAATTTAGCACAGTGCCTGGCACTTAATAAGCACTTCAAGTGTTAGTTGCCATTATGGTGATTTCTGTGGTCTTCTAGACTTCACCTTTCCCAATTCTCTCTCCTAGACTCCTAGGAAACGGAAATCCAGCAGTGAGACCCAGATCCAG	GAATTTAGCACAGTGCCTGGCACTTAATAAGCACTTCAAGTGTTAGTTGCCATTATGGTGATTTCTGTGGTCTTCTAGACTTCACCTTTCCCAATTCTCTCTCCTAGACTCCTAGGAAACGGAAATCCAGCAGTGAGACCCAGATCCAG	-			P-0070274-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			137	39	141	0	ENST00000371975.4:c.91-105_134del		p.X31_splice	ENST00000371975	NM_003579.3	31																																																																																
MYCL	4610	MSKCC	GRCh37	1	40363472	40363472	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070274-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			636	83	529	0	ENST00000397332.2:c.757T>C	p.Cys253Arg	p.C253R	ENST00000397332	NM_001033082.2	253	Tgc/Cgc																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627720	14627720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070274-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			689	102	582	0	ENST00000254322.2:c.350G>C	p.Gly117Ala	p.G117A	ENST00000254322	NM_006145.1	117	gGg/gCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			410	193	447	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52713670	52713670	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			580	121	507	0	ENST00000394830.3:c.58G>A	p.Asp20Asn	p.D20N	ENST00000394830	NM_018313.4	20	Gat/Aat																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902217	50902217	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			729	194	585	0	ENST00000440232.2:c.109G>T	p.Asp37Tyr	p.D37Y	ENST00000440232	NM_002691.3	37	Gac/Tac																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944264	81944264	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1009796025		P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			525	279	484	0	ENST00000359376.3:c.1873G>T	p.Ala625Ser	p.A625S	ENST00000359376	NM_002661.3	625	Gcc/Tcc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11182121	11182121	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			517	87	513	0	ENST00000361445.4:c.6725A>G	p.His2242Arg	p.H2242R	ENST00000361445	NM_004958.3	2242	cAc/cGc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469627	25469628	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			691	113	591	0	ENST00000264709.3:c.1140_1141delinsTT	p.Gly381Trp	p.G381W	ENST00000264709	NM_175629.2	380	gcGGgg/gcTTgg																																																																															
EP300	2033	MSKCC	GRCh37	22	41522031	41522031	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			491	64	369	0	ENST00000263253.7:c.893G>T	p.Gly298Val	p.G298V	ENST00000263253	NM_001429.3	298	gGa/gTa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097012	11097012	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	222	537	0	ENST00000344626.4:c.503G>T	p.Gly168Val	p.G168V	ENST00000344626	NM_003072.3	168	gGc/gTc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198268309	198268309	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			365	63	369	0	ENST00000335508.6:c.1719G>T	p.Lys573Asn	p.K573N	ENST00000335508	NM_012433.2	573	aaG/aaT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151960136	151960136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			304	109	313	0	ENST00000262189.6:c.1264A>G	p.Met422Val	p.M422V	ENST00000262189	NM_170606.2	422	Atg/Gtg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343130	118343130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			833	52	528	0	ENST00000534358.1:c.1256C>T	p.Ser419Leu	p.S419L	ENST00000534358	NM_005933.3	419	tCg/tTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70333125	70333125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			652	102	561	0	ENST00000373644.4:c.1030G>A	p.Asp344Asn	p.D344N	ENST00000373644	NM_030625.2	344	Gat/Aat																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46531826	46531826	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			376	74	381	0	ENST00000262741.5:c.521T>C	p.Ile174Thr	p.I174T	ENST00000262741	NM_003629.3	174	aTt/aCt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193202235	193202235	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			613	83	463	0	ENST00000367435.3:c.1267G>T	p.Val423Leu	p.V423L	ENST00000367435	NM_024529.4	423	Gta/Tta																																																																															
AGO2	27161	MSKCC	GRCh37	8	141559281	141559281	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			779	95	609	0	ENST00000220592.5:c.1520A>G	p.His507Arg	p.H507R	ENST00000220592	NM_012154.3	507	cAc/cGc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326720	62326720	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	A	A	T			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1058	143	699	0	ENST00000482936.1:c.3539A>T	p.Lys1180Met	p.K1180M	ENST00000482936		1180	aAg/aTg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564428	139564428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			456	222	544	0	ENST00000308874.7:c.376C>T	p.Pro126Ser	p.P126S	ENST00000308874		126	Cct/Tct																																																																															
TAP1	6890	MSKCC	GRCh37	6	32820860	32820860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			645	274	600	0	ENST00000354258.4:c.734G>T	p.Arg245Leu	p.R245L	ENST00000354258	NM_000593.5	245	cGc/cTc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134483	41134483	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			711	90	547	0	ENST00000379561.5:c.1145C>A	p.Ser382Ter	p.S382*	ENST00000379561	NM_002015.3	382	tCa/tAa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	402157	402157	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			617	113	468	0	ENST00000399788.2:c.4634C>G	p.Ser1545Ter	p.S1545*	ENST00000399788	NM_001042603.1	1545	tCa/tGa																																																																															
EP300	2033	MSKCC	GRCh37	22	41568565	41568565	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			528	155	491	0	ENST00000263253.7:c.4515G>T	p.Glu1505Asp	p.E1505D	ENST00000263253	NM_001429.3	1505	gaG/gaT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117677843	117677843	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	189	447	0	ENST00000368508.3:c.4090del	p.Asp1364IlefsTer25	p.D1364Ifs*25	ENST00000368508	NM_002944.2	1364	Gat/at																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138431146	138431146	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			482	64	350	0	ENST00000289153.2:c.1303C>T	p.His435Tyr	p.H435Y	ENST00000289153	NM_006219.2	435	Cat/Tat																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747948	41747948	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			435	70	359	0	ENST00000226382.2:c.821C>A	p.Ala274Asp	p.A274D	ENST00000226382	NM_003924.3	274	gCt/gAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541478	187541478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	178	489	0	ENST00000441802.2:c.6262G>T	p.Ala2088Ser	p.A2088S	ENST00000441802	NM_005245.3	2088	Gcc/Tcc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2958154	2958154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			639	244	507	0	ENST00000396946.4:c.2578G>T	p.Gly860Cys	p.G860C	ENST00000396946	NM_032415.4	860	Ggc/Tgc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62320477	62320477	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs763726399		P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			674	178	497	0	ENST00000482936.1:c.1870C>T	p.Arg624Trp	p.R624W	ENST00000482936		624	Cgg/Tgg																																																																															
SMO	6608	MSKCC	GRCh37	7	128852044	128852044	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			755	99	634	1	ENST00000249373.3:c.2116C>T	p.Gln706Ter	p.Q706*	ENST00000249373	NM_005631.4	706	Cag/Tag																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664996	138664996	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			510	89	388	0	ENST00000330315.3:c.569C>G	p.Ala190Gly	p.A190G	ENST00000330315	NM_023067.3	190	gCg/gGg																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125503118	125503118	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			492	177	440	0	ENST00000428830.2:c.485G>C	p.Arg162Pro	p.R162P	ENST00000428830	NM_001114121.2	162	cGt/cCt																																																																															
BLM	641	MSKCC	GRCh37	15	91306261	91306261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			396	178	452	0	ENST00000355112.3:c.1948C>A	p.Pro650Thr	p.P650T	ENST00000355112	NM_000057.2	650	Cct/Act																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93969183	93969183	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	93	465	0	ENST00000369303.4:c.1813A>T	p.Thr605Ser	p.T605S	ENST00000369303	NM_004440.3	605	Acc/Tcc																																																																															
ERG	2078	MSKCC	GRCh37	21	39755831	39755831	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			569	73	441	0	ENST00000288319.7:c.934C>T	p.Gln312Ter	p.Q312*	ENST00000288319	NM_182918.3	312	Cag/Tag																																																																															
FLT3	2322	MSKCC	GRCh37	13	28602399	28602399	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			290	222	401	0	ENST00000241453.7:c.1969G>T	p.Ala657Ser	p.A657S	ENST00000241453	NM_004119.2	657	Gca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577128	7577128	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519987		P-0070632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	194	408	0	ENST00000269305.4:c.810T>G	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	ttT/ttG																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519896		P-0070632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	178	368	0	ENST00000281708.4:c.1514G>T	p.Arg505Leu	p.R505L	ENST00000281708	NM_033632.3	505	cGc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112175074	112175074	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	99	337	0	ENST00000257430.4:c.3784del	p.Tyr1262IlefsTer3	p.Y1262Ifs*3	ENST00000257430	NM_000038.5	1261	acT/ac																																																																															
MED12	9968	MSKCC	GRCh37	X	70356863	70356863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	84	249	0	ENST00000374080.3:c.5535C>A	p.Asn1845Lys	p.N1845K	ENST00000374080		1845	aaC/aaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0070706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	14	296	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0070706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	49	433	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913324		P-0070706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	49	416	0	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132522	11132522	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778175819		P-0070706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	54	512	1	ENST00000344626.4:c.2738C>T	p.Pro913Leu	p.P913L	ENST00000344626	NM_003072.3	913	cCg/cTg																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519721	137519721	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0070706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	26	362	0	ENST00000367739.4:c.917C>G	p.Ser306Ter	p.S306*	ENST00000367739	NM_000416.2	306	tCa/tGa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432170	121432170	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	41	464	0	ENST00000257555.6:c.917G>T	p.Gly306Val	p.G306V	ENST00000257555		306	gGc/gTc																																																																															
ATR	545	MSKCC	GRCh37	3	142278092	142278092	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0070706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	14	248	0	ENST00000350721.4:c.1732+1G>A		p.X578_splice	ENST00000350721	NM_001184.3	578																																																																																
PDGFRA	5156	MSKCC	GRCh37	4	55155049	55155049	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	45	469	0	ENST00000257290.5:c.2758C>A	p.His920Asn	p.H920N	ENST00000257290	NM_006206.4	920	Cac/Aac																																																																															
TET2	54790	MSKCC	GRCh37	4	106164011	106164011	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	17	303	0	ENST00000380013.4:c.3521C>A	p.Ala1174Asp	p.A1174D	ENST00000380013	NM_001127208.2	1174	gCt/gAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187554951	187554951	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	39	458	0	ENST00000441802.2:c.4210G>T	p.Val1404Leu	p.V1404L	ENST00000441802	NM_005245.3	1404	Gtg/Ttg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752362	57752362	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	18	280	0	ENST00000274289.3:c.1211A>C	p.Lys404Thr	p.K404T	ENST00000274289	NM_006622.3	404	aAg/aCg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729592	41729592	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	56	512	0	ENST00000242208.4:c.937G>T	p.Glu313Ter	p.E313*	ENST00000242208	NM_002192.2	313	Gag/Tag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411416	63411416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	44	514	0	ENST00000330258.3:c.1751G>T	p.Arg584Leu	p.R584L	ENST00000330258	NM_152424.3	584	cGt/cTt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123171419	123171419	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	19	326	0	ENST00000218089.9:c.331G>T	p.Asp111Tyr	p.D111Y	ENST00000218089	NM_001042749.1	111	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0070711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	32	428	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	54	486	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0070711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	20	312	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0070712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	298	594	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220443	1220443	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	244	618	0	ENST00000326873.7:c.536C>G	p.Pro179Arg	p.P179R	ENST00000326873	NM_000455.4	179	cCg/cGg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678773	52678773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	123	244	0	ENST00000394830.3:c.846G>A	p.Met282Ile	p.M282I	ENST00000394830	NM_018313.4	282	atG/atA																																																																															
CD79B	974	MSKCC	GRCh37	17	62006793	62006793	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0070712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	264	550	0	ENST00000392795.3:c.594+1G>A		p.X198_splice	ENST00000392795	NM_001039933.1	198																																																																																
POLE	5426	MSKCC	GRCh37	12	133256560	133256560	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060500817		P-0070712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	250	458	0	ENST00000320574.5:c.403C>T	p.Pro135Ser	p.P135S	ENST00000320574	NM_006231.2	135	Ccc/Tcc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678767	52678768	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0070712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	105	244	0	ENST00000394830.3:c.851dup	p.Ala285GlyfsTer2	p.A285Gfs*2	ENST00000394830	NM_018313.4	284	aag/aaAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630410	187630410	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	235	546	0	ENST00000441802.2:c.572G>T	p.Arg191Leu	p.R191L	ENST00000441802	NM_005245.3	191	cGa/cTa																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794452	242794452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	250	550	1	ENST00000334409.5:c.490G>A	p.Gly164Ser	p.G164S	ENST00000334409	NM_005018.2	164	Ggc/Agc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280110	66280110	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	198	424	0	ENST00000273854.3:c.1579G>T	p.Ala527Ser	p.A527S	ENST00000273854	NM_004439.5	527	Gca/Tca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076960	41076960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	105	322	0	ENST00000373198.4:c.1460C>A	p.Ala487Asp	p.A487D	ENST00000373198	NM_133170.3	487	gCt/gAt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444246	50444246	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	206	512	0	ENST00000331340.3:c.176T>A	p.Val59Glu	p.V59E	ENST00000331340	NM_006060.4	59	gTa/gAa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602351	10602352	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0070712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	247	602	1	ENST00000171111.5:c.1226_1227delinsAT	p.Met409Asn	p.M409N	ENST00000171111	NM_203500.1	409	aTG/aAT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0070249-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	105	167	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0070249-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	20	143	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070249-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	27	393	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																																																															
MDM2	4193	MSKCC	GRCh37	12	69218184	69218184	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070249-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	42	325	0	ENST00000462284.1:c.400C>A	p.His134Asn	p.H134N	ENST00000462284	NM_002392.5	134	Cac/Aac																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25973170	25973170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070249-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	46	374	0	ENST00000435504.4:c.1255C>T	p.Leu419Phe	p.L419F	ENST00000435504		419	Ctt/Ttt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266166	198266166	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070249-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	46	290	0	ENST00000335508.6:c.2454C>G	p.Phe818Leu	p.F818L	ENST00000335508	NM_012433.2	818	ttC/ttG																																																																															
PPARG	5468	MSKCC	GRCh37	3	12421268	12421268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070249-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	95	343	0	ENST00000287820.6:c.148C>T	p.Leu50Phe	p.L50F	ENST00000287820	NM_015869.4	50	Ctc/Ttc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229412	98229412	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070249-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	51	370	0	ENST00000331920.6:c.2546G>C	p.Arg849Thr	p.R849T	ENST00000331920	NM_000264.3	849	aGa/aCa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11194520	11194520	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759390743		P-0070249-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	26	354	0	ENST00000361445.4:c.5134G>A	p.Asp1712Asn	p.D1712N	ENST00000361445	NM_004958.3	1712	Gat/Aat																																																																															
ABL1	25	MSKCC	GRCh37	9	133760559	133760559	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs557879885		P-0070258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	57	285	0	ENST00000318560.5:c.2882C>T	p.Pro961Leu	p.P961L	ENST00000318560	NM_005157.4	961	cCg/cTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821968	72821968	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1403055925		P-0070258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	37	291	0	ENST00000268489.5:c.10207G>C	p.Val3403Leu	p.V3403L	ENST00000268489	NM_006885.3	3403	Gtc/Ctc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579306	7579320	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTGACCGTGCAAGT	ACTGACCGTGCAAGT	-			P-0070258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	202	192	0	ENST00000269305.4:c.367_375+6del		p.X123_splice	ENST00000269305	NM_001126112.2	123																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49421834	49421834	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs117904191		P-0070262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	146	683	0	ENST00000301067.7:c.14473C>T	p.Arg4825Trp	p.R4825W	ENST00000301067	NM_003482.3	4825	Cgg/Tgg																																																																															
ERF	2077	MSKCC	GRCh37	19	42754483	42754483	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs765295141		P-0070262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	124	571	0	ENST00000222329.4:c.257G>A	p.Arg86His	p.R86H	ENST00000222329	NM_006494.2	86	cGc/cAc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515188	149515188	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	107	554	2	ENST00000261799.4:c.294C>A	p.Tyr98Ter	p.Y98*	ENST00000261799	NM_002609.3	98	taC/taA																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39305316	39305316	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	32	527	0	ENST00000373001.3:c.1109G>T	p.Gly370Val	p.G370V	ENST00000373001	NM_022157.3	370	gGt/gTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440113	49440113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	92	603	0	ENST00000301067.7:c.4513G>T	p.Val1505Leu	p.V1505L	ENST00000301067	NM_003482.3	1505	Gtg/Ttg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350058	15350058	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	11	295	0	ENST00000263377.2:c.3594C>A	p.Asn1198Lys	p.N1198K	ENST00000263377	NM_058243.2	1198	aaC/aaA																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259970	16259971	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0070265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	16	376	0	ENST00000375759.3:c.7236_7237del	p.Gln2413ArgfsTer5	p.Q2413Rfs*5	ENST00000375759	NM_015001.2	2412	tCC/t																																																																															
KLF5	688	MSKCC	GRCh37	13	73649905	73649905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	60	332	0	ENST00000377687.4:c.1255G>C	p.Glu419Gln	p.E419Q	ENST00000377687	NM_001730.3	419	Gag/Cag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857788	9857788	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs918332999		P-0070276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	253	599	0	ENST00000330684.3:c.3613G>A	p.Glu1205Lys	p.E1205K	ENST00000330684	NM_001134407.1	1205	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520006		P-0070278-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	140	441	0	ENST00000269305.4:c.821T>G	p.Val274Gly	p.V274G	ENST00000269305	NM_001126112.2	274	gTt/gGt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229534	5229534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070278-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	96	407	0	ENST00000357368.4:c.2317C>T	p.Arg773Cys	p.R773C	ENST00000357368	NM_002850.3	773	Cgc/Tgc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63409875	63409875	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070278-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	67	508	0	ENST00000330258.3:c.3292C>T	p.Gln1098Ter	p.Q1098*	ENST00000330258	NM_152424.3	1098	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070278-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	146	303	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
REST	5978	MSKCC	GRCh37	4	57777359	57777360	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0070278-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	128	429	0	ENST00000309042.7:c.561dup	p.Val188CysfsTer32	p.V188Cfs*32	ENST00000309042	NM_005612.4	185	-/T																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726478	46726478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070278-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	163	585	0	ENST00000371975.4:c.557G>A	p.Gly186Asp	p.G186D	ENST00000371975	NM_003579.3	186	gGc/gAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396942	139396942	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0070278-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	75	307	0	ENST00000277541.6:c.5168-2A>T		p.X1723_splice	ENST00000277541	NM_017617.3	1723																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0070280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	22	415	0				ENST00000310581	NM_198253.2																																																																																	
STK11	6794	MSKCC	GRCh37	19	1220578	1220578	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0070280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	29	515	0	ENST00000326873.7:c.598-2A>T		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																																
INPP4B	8821	MSKCC	GRCh37	4	143352340	143352340	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370929272		P-0070280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	36	327	0	ENST00000262992.4:c.73G>A	p.Gly25Arg	p.G25R	ENST00000262992	NM_001101669.1	25	Ggg/Agg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	41	285	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5044473	5044473	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	23	273	0	ENST00000381652.3:c.421G>T	p.Glu141Ter	p.E141*	ENST00000381652	NM_004972.3	141	Gaa/Taa																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873172	136873172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	56	509	1	ENST00000241393.3:c.326G>A	p.Cys109Tyr	p.C109Y	ENST00000241393	NM_003467.2	109	tGc/tAc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845882	156845882	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	37	594	0	ENST00000524377.1:c.1512C>A	p.His504Gln	p.H504Q	ENST00000524377	NM_002529.3	504	caC/caA																																																																															
PAX5	5079	MSKCC	GRCh37	9	36923417	36923417	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	43	385	0	ENST00000358127.4:c.845C>A	p.Ala282Asp	p.A282D	ENST00000358127	NM_001280556.1	282	gCc/gAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041568	47041568	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	37	550	0	ENST00000329236.7:c.1559A>G	p.Tyr520Cys	p.Y520C	ENST00000329236	NM_001204466.1	520	tAc/tGc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11168983	11168983	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	41	365	0	ENST00000344626.4:c.4477G>T	p.Glu1493Ter	p.E1493*	ENST00000344626	NM_003072.3	1493	Gag/Tag																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47601060	47601060	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	54	385	0	ENST00000263735.4:c.298G>C	p.Asp100His	p.D100H	ENST00000263735	NM_002354.2	100	Gat/Cat																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430776	181430776	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	41	638	0	ENST00000325404.1:c.628A>G	p.Met210Val	p.M210V	ENST00000325404	NM_003106.3	210	Atg/Gtg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610205	10610206	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0070280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	53	533	0	ENST00000171111.5:c.504_505insT	p.Arg169SerfsTer5	p.R169Sfs*5	ENST00000171111	NM_203500.1	168	-/T																																																																															
DICER1	23405	MSKCC	GRCh37	14	95556960	95556960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	45	383	0	ENST00000343455.3:c.5644G>T	p.Val1882Leu	p.V1882L	ENST00000343455	NM_177438.2	1882	Gtg/Ttg																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281582	49281582	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	47	472	0	ENST00000282018.3:c.629G>T	p.Cys210Phe	p.C210F	ENST00000282018	NM_020377.2	210	tGc/tTc																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61323184	61323184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	65	223	0	ENST00000283752.5:c.880G>A	p.Asp294Asn	p.D294N	ENST00000283752	NM_006919.2	294	Gac/Aac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859850	151859850	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	144	549	0	ENST00000262189.6:c.10812del	p.Arg3606GlufsTer24	p.R3606Efs*24	ENST00000262189	NM_170606.2	3604	aaG/aa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10305559	10305565	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGTAC	GCGGTAC	-			P-0070281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	59	422	0	ENST00000340748.4:c.11_17del	p.Arg4ProfsTer31	p.R4Pfs*31	ENST00000340748		4	cGTACCGCc/cc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2103376	2103376	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070281-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	77	344	0	ENST00000219476.3:c.259G>T	p.Asp87Tyr	p.D87Y	ENST00000219476	NM_000548.3	87	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0070293-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	48	506	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603147	48603147	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs377767387		P-0070293-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	20	324	0	ENST00000342988.3:c.1447+1G>A		p.X483_splice	ENST00000342988	NM_005359.5	483																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0070293-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	37	278	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520009		P-0070297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	21	319	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0070297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	15	298	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	21	416	0	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871182	12871182	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1328655695		P-0070297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	46	327	0	ENST00000228872.4:c.410del	p.Pro137ArgfsTer8	p.P137Rfs*8	ENST00000228872	NM_004064.3	137	Ccg/cg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060693	38060700	+	frameshift_variant	Frame_Shift_Del	DEL	CGTAGAGC	CGTAGAGC	-			P-0070297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			978	34	507	0	ENST00000250448.2:c.1289_1296del	p.Gly430ValfsTer125	p.G430Vfs*125	ENST00000250448	NM_004496.3	430	gGCTCTACG/g																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061018	38061044	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGCGCCCTCTAGCTGGCCGGTCTTC	GGCGCGCCCTCTAGCTGGCCGGTCTTC	AG			P-0070297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			732	29	428	2	ENST00000250448.2:c.945_971delinsCT	p.Lys316TrpfsTer26	p.K316Wfs*26	ENST00000250448	NM_004496.3	315	ggGAAGACCGGCCAGCTAGAGGGCGCGCCg/ggCTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0070312-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	228	402	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103519143	103519143	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070312-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	158	348	0	ENST00000355739.4:c.2481del	p.Asn827LysfsTer6	p.N827Kfs*6	ENST00000355739	NM_000123.3	827	aaT/aa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610118	10610118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	160	473	0	ENST00000171111.5:c.592G>T	p.Glu198Ter	p.E198*	ENST00000171111	NM_203500.1	198	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778720		P-0070314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	191	432	0	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578195	7578197	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0070314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	179	426	0	ENST00000269305.4:c.652_654del	p.Val218del	p.V218del	ENST00000269305	NM_001126112.2	218	GTG/-																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926888	112926888	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs397507546		P-0070314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	132	349	0	ENST00000351677.2:c.1508G>T	p.Gly503Val	p.G503V	ENST00000351677	NM_002834.3	503	gGg/gTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81386559	81386559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	89	282	0	ENST00000222390.5:c.428C>A	p.Thr143Asn	p.T143N	ENST00000222390	NM_000601.4	143	aCt/aAt																																																																															
FANCC	2176	MSKCC	GRCh37	9	97869405	97869407	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0070314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	112	435	0	ENST00000289081.3:c.1474_1476del	p.Leu492del	p.L492del	ENST00000289081	NM_000136.2	492	CTC/-																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218134	36218134	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1357583062		P-0070314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	153	412	1	ENST00000222270.7:c.4081G>A	p.Asp1361Asn	p.D1361N	ENST00000222270	NM_014727.1	1361	Gat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0070314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	103	270	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881535	111881535	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	178	517	0	ENST00000393256.3:c.215del	p.Pro72LeufsTer12	p.P72Lfs*12	ENST00000393256	NM_006538.4	71	ggC/gg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374444	118374444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	279	539	0	ENST00000534358.1:c.7837G>A	p.Gly2613Ser	p.G2613S	ENST00000534358	NM_005933.3	2613	Ggc/Agc																																																																															
TRIP13	9319	MSKCC	GRCh37	5	904315	904315	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	92	358	0	ENST00000166345.3:c.588G>C	p.Leu196Phe	p.L196F	ENST00000166345	NM_004237.3	196	ttG/ttC																																																																															
TEK	7010	MSKCC	GRCh37	9	27204923	27204923	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141520692		P-0070314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	150	377	0	ENST00000380036.4:c.2224G>A	p.Gly742Arg	p.G742R	ENST00000380036	NM_000459.3	742	Gga/Aga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120512275	120512275	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	242	582	0	ENST00000256646.2:c.967G>T	p.Gly323Cys	p.G323C	ENST00000256646	NM_024408.3	323	Ggc/Tgc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549353	21549353	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	188	502	0	ENST00000382592.4:c.2923G>T	p.Ala975Ser	p.A975S	ENST00000382592	NM_014572.2	975	Gcc/Tcc																																																																															
RB1	5925	MSKCC	GRCh37	13	48954198	48954198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398123331		P-0070331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	14	153	0	ENST00000267163.4:c.1399C>T	p.Arg467Ter	p.R467*	ENST00000267163	NM_000321.2	467	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0070331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	88	436	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	36	393	0	ENST00000269305.4:c.398T>G	p.Met133Arg	p.M133R	ENST00000269305	NM_001126112.2	133	aTg/aGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0070331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	66	229	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576888	7576888	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0070333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	379	387	11	ENST00000269305.4:c.958A>T	p.Lys320Ter	p.K320*	ENST00000269305	NM_001126112.2	320	Aag/Tag																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371758	55371758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	218	321	12	ENST00000297316.4:c.448C>T	p.Arg150Trp	p.R150W	ENST00000297316	NM_022454.3	150	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0070341-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	38	354	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070341-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	33	241	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MED12	9968	MSKCC	GRCh37	X	70352991	70352991	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070341-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	32	331	0	ENST00000374080.3:c.4546G>C	p.Asp1516His	p.D1516H	ENST00000374080		1516	Gat/Cat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573563	48573564	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0070342-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	88	452	0	ENST00000342988.3:c.153dup	p.Asp52ArgfsTer2	p.D52Rfs*2	ENST00000342988	NM_005359.5	49	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519981		P-0070342-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	47	418	0	ENST00000269305.4:c.712T>C	p.Cys238Arg	p.C238R	ENST00000269305	NM_001126112.2	238	Tgt/Cgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070342-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	188	257	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578199	7578199	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	160	355	0	ENST00000269305.4:c.650T>G	p.Val217Gly	p.V217G	ENST00000269305	NM_001126112.2	217	gTg/gGg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489544	56489544	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761002408		P-0070350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	171	299	0	ENST00000267101.3:c.2009G>A	p.Arg670Gln	p.R670Q	ENST00000267101	NM_001982.3	670	cGg/cAg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88676897	88676897	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782682		P-0070350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	91	171	0	ENST00000372037.3:c.682C>T	p.Arg228Ter	p.R228*	ENST00000372037	NM_004329.2	228	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	74	189	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KIT	3815	MSKCC	GRCh37	4	55599255	55599255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	91	265	0	ENST00000288135.5:c.2381C>A	p.Ala794Glu	p.A794E	ENST00000288135	NM_000222.2	794	gCa/gAa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162475191	162475191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070350-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	60	248	0	ENST00000366898.1:c.550G>A	p.Asp184Asn	p.D184N	ENST00000366898	NM_004562.2	184	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0070352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	59	396	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0070352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	89	289	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
YAP1	10413	MSKCC	GRCh37	11	102100531	102100531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	58	303	0	ENST00000282441.5:c.1375G>A	p.Glu459Lys	p.E459K	ENST00000282441	NM_001130145.2	459	Gaa/Aaa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343381	118343381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	29	284	0	ENST00000534358.1:c.1507C>T	p.Arg503Trp	p.R503W	ENST00000534358	NM_005933.3	503	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0070352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	59	203	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0070353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	286	367	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
WT1	7490	MSKCC	GRCh37	11	32450127	32450127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	239	313	0	ENST00000332351.3:c.685G>A	p.Gly229Ser	p.G229S	ENST00000332351	NM_024426.4	229	Ggt/Agt																																																																															
WT1	7490	MSKCC	GRCh37	11	32456842	32456842	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	197	281	1	ENST00000332351.3:c.50C>A	p.Thr17Lys	p.T17K	ENST00000332351	NM_024426.4	17	aCg/aAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152043	11152043	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755455174		P-0070353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	55	413	0	ENST00000344626.4:c.4231C>T	p.Arg1411Trp	p.R1411W	ENST00000344626	NM_003072.3	1411	Cgg/Tgg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21337379	21337379	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs761241914		P-0070353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	218	348	0	ENST00000215739.8:c.263+1G>A		p.X88_splice	ENST00000215739	NM_006767.3	88																																																																																
ERRFI1	54206	MSKCC	GRCh37	1	8073433	8073433	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs147996134		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	236	275	0	ENST00000377482.5:c.1226A>C	p.Lys409Thr	p.K409T	ENST00000377482	NM_018948.3	409	aAa/aCa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587777894		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	175	230	0	ENST00000361445.4:c.6644C>T	p.Ser2215Phe	p.S2215F	ENST00000361445	NM_004958.3	2215	tCt/tTt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259967	16259967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	202	350	0	ENST00000375759.3:c.7232C>T	p.Ser2411Leu	p.S2411L	ENST00000375759	NM_015001.2	2411	tCg/tTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339110	65339110	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs747560156		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	50	321	0	ENST00000342505.4:c.426G>T	p.Lys142Asn	p.K142N	ENST00000342505	NM_002227.2	142	aaG/aaT																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115273024	115273024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	190	294	0	ENST00000438362.2:c.1349G>T	p.Arg450Ile	p.R450I	ENST00000438362	NM_001242891.1	450	aGa/aTa																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874215	155874215	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	219	277	0	ENST00000368323.3:c.316C>T	p.Arg106Ter	p.R106*	ENST00000368323	NM_006912.5	106	Cga/Tga																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740170	162740170	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1193186486		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	142	318	0	ENST00000367921.3:c.1372C>T	p.Arg458Cys	p.R458C	ENST00000367921	NM_006182.2	458	Cgc/Tgc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163297332	163297332	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1292835761		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	200	236	0	ENST00000271452.3:c.178C>T	p.Arg60Ter	p.R60*	ENST00000271452	NM_145697.2	60	Cga/Tga																																																																															
NUF2	83540	MSKCC	GRCh37	1	163306627	163306627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	121	181	0	ENST00000271452.3:c.424C>A	p.Leu142Ile	p.L142I	ENST00000271452	NM_145697.2	142	Ctt/Att																																																																															
AKT3	10000	MSKCC	GRCh37	1	243675668	243675668	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	31	210	0	ENST00000263826.5:c.1312G>T	p.Glu438Ter	p.E438*	ENST00000263826	NM_005465.4	438	Gaa/Taa																																																																															
RET	5979	MSKCC	GRCh37	10	43595990	43595990	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs547308774		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	152	324	0	ENST00000355710.3:c.157G>A	p.Val53Ile	p.V53I	ENST00000355710	NM_020975.4	53	Gtc/Atc																																																																															
RET	5979	MSKCC	GRCh37	10	43615593	43615593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	205	306	0	ENST00000355710.3:c.2672C>T	p.Ser891Leu	p.S891L	ENST00000355710	NM_020975.4	891	tCg/tTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70405743	70405743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	76	254	0	ENST00000373644.4:c.3257C>T	p.Ser1086Leu	p.S1086L	ENST00000373644	NM_030625.2	1086	tCg/tTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710666	114710666	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	176	291	0	ENST00000543371.1:c.151G>T	p.Glu51Ter	p.E51*	ENST00000543371	NM_001198531.1	51	Gaa/Taa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274803	123274803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	83	304	0	ENST00000358487.5:c.1115C>T	p.Ser372Phe	p.S372F	ENST00000358487	NM_000141.4	372	tCc/tTc																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316059	14316059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	86	138	0	ENST00000256196.4:c.366G>T	p.Met122Ile	p.M122I	ENST00000256196		122	atG/atT																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741343	17741343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	31	227	0	ENST00000250003.3:c.14C>T	p.Ser5Leu	p.S5L	ENST00000250003	NM_002478.4	5	tCg/tTg																																																																															
PGR	5241	MSKCC	GRCh37	11	100933477	100933477	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	174	236	0	ENST00000325455.5:c.1913A>C	p.Lys638Thr	p.K638T	ENST00000325455	NM_001202474.3	638	aAa/aCa																																																																															
BIRC3	330	MSKCC	GRCh37	11	102207675	102207675	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	207	283	0	ENST00000263464.3:c.1657G>T	p.Glu553Ter	p.E553*	ENST00000263464	NM_001165.4	553	Gaa/Taa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342545	118342545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	37	325	0	ENST00000534358.1:c.671G>A	p.Arg224Lys	p.R224K	ENST00000534358	NM_005933.3	224	aGa/aAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118371854	118371854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	31	245	0	ENST00000534358.1:c.6311C>A	p.Ser2104Tyr	p.S2104Y	ENST00000534358	NM_005933.3	2104	tCt/tAt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	402318	402318	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1055745005		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	203	248	0	ENST00000399788.2:c.4473G>T	p.Glu1491Asp	p.E1491D	ENST00000399788	NM_001042603.1	1491	gaG/gaT																																																																															
KDM5A	5927	MSKCC	GRCh37	12	417006	417006	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	240	315	0	ENST00000399788.2:c.3544G>T	p.Asp1182Tyr	p.D1182Y	ENST00000399788	NM_001042603.1	1182	Gac/Tac																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18491465	18491465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	170	234	1	ENST00000266497.5:c.1378C>A	p.Leu460Ile	p.L460I	ENST00000266497		460	Ctt/Att																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287446	46287446	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs774801990		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	175	235	0	ENST00000334344.6:c.5305C>T	p.Arg1769Ter	p.R1769*	ENST00000334344	NM_152641.2	1769	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445893	49445893	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	48	420	0	ENST00000301067.7:c.1573G>T	p.Glu525Ter	p.E525*	ENST00000301067	NM_003482.3	525	Gag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117369	115117369	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1198837775		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	33	324	0	ENST00000257566.3:c.805C>T	p.Arg269Trp	p.R269W	ENST00000257566	NM_016569.3	269	Cgg/Tgg																																																																															
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519943		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	176	259	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589384	28589384	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	155	232	0	ENST00000241453.7:c.2663C>A	p.Pro888His	p.P888H	ENST00000241453	NM_004119.2	888	cCt/cAt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28979966	28979966	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61763181		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	32	242	0	ENST00000282397.4:c.1502G>A	p.Arg501Lys	p.R501K	ENST00000282397	NM_002019.4	501	aGa/aAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906611	32906611	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	204	313	0	ENST00000380152.3:c.996T>G	p.Ile332Met	p.I332M	ENST00000380152		332	atT/atG																																																																															
RB1	5925	MSKCC	GRCh37	13	48919244	48919244	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913296		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	126	192	0	ENST00000267163.4:c.409G>T	p.Glu137Ter	p.E137*	ENST00000267163	NM_000321.2	137	Gaa/Taa																																																																															
RB1	5925	MSKCC	GRCh37	13	48934254	48934254	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1131690904		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	130	223	0	ENST00000267163.4:c.709G>T	p.Glu237Ter	p.E237*	ENST00000267163	NM_000321.2	237	Gaa/Taa																																																																															
RB1	5925	MSKCC	GRCh37	13	48947550	48947550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	31	212	0	ENST00000267163.4:c.1137G>T	p.Met379Ile	p.M379I	ENST00000267163	NM_000321.2	379	atG/atT																																																																															
RB1	5925	MSKCC	GRCh37	13	49039143	49039143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs529366765		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	43	165	0	ENST00000267163.4:c.2221C>T	p.Arg741Cys	p.R741C	ENST00000267163	NM_000321.2	741	Cgt/Tgt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73343019	73343019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	51	167	0	ENST00000377767.4:c.1787G>T	p.Arg596Ile	p.R596I	ENST00000377767	NM_014953.3	596	aGa/aTa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527789	103527789	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41551412		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	274	354	0	ENST00000355739.4:c.3097G>A	p.Glu1033Lys	p.E1033K	ENST00000355739	NM_000123.3	1033	Gaa/Aaa																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	171	266	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
MGA	23269	MSKCC	GRCh37	15	42041074	42041074	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	235	355	0	ENST00000219905.7:c.5452C>T	p.Arg1818Ter	p.R1818*	ENST00000219905	NM_001164273.1	1818	Cga/Tga																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43699633	43699633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	195	300	0	ENST00000382044.4:c.5882G>T	p.Arg1961Ile	p.R1961I	ENST00000382044	NM_001141980.1	1961	aGa/aTa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43769902	43769902	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	228	200	0	ENST00000382044.4:c.844G>T	p.Glu282Ter	p.E282*	ENST00000382044	NM_001141980.1	282	Gaa/Taa																																																																															
B2M	567	MSKCC	GRCh37	15	45007645	45007645	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	199	254	0	ENST00000558401.1:c.92C>A	p.Ser31Ter	p.S31*	ENST00000558401	NM_004048.2	31	tCa/tAa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472520	88472520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	171	335	0	ENST00000360948.2:c.2035G>A	p.Asp679Asn	p.D679N	ENST00000360948	NM_001012338.2	679	Gac/Aac																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88670405	88670405	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	30	262	0	ENST00000360948.2:c.1281A>C	p.Glu427Asp	p.E427D	ENST00000360948	NM_001012338.2	427	gaA/gaC																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832265	72832265	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267604632		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	165	321	0	ENST00000268489.5:c.4316G>A	p.Arg1439Gln	p.R1439Q	ENST00000268489	NM_006885.3	1439	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	179	265	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998898	11998898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	140	242	0	ENST00000353533.5:c.400C>T	p.Arg134Trp	p.R134W	ENST00000353533	NM_003010.3	134	Cgg/Tgg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011200	12011200	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	126	201	0	ENST00000353533.5:c.607G>T	p.Glu203Ter	p.E203*	ENST00000353533	NM_003010.3	203	Gaa/Taa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16040679	16040679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	181	198	0	ENST00000268712.3:c.1455G>T	p.Glu485Asp	p.E485D	ENST00000268712	NM_006311.3	485	gaG/gaT																																																																															
NF1	4763	MSKCC	GRCh37	17	29592269	29592269	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	32	223	0	ENST00000358273.4:c.4747G>T	p.Glu1583Ter	p.E1583*	ENST00000358273	NM_001042492.2	1583	Gaa/Taa																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40376808	40376808	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	170	304	0	ENST00000293328.3:c.364G>T	p.Glu122Ter	p.E122*	ENST00000293328	NM_012448.3	122	Gaa/Taa																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56772321	56772321	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	136	268	0	ENST00000337432.4:c.175G>T	p.Glu59Ter	p.E59*	ENST00000337432	NM_058216.2	59	Gaa/Taa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58701094	58701094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	35	214	0	ENST00000305921.3:c.685G>A	p.Glu229Lys	p.E229K	ENST00000305921	NM_003620.3	229	Gaa/Aaa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740814	58740814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	95	308	0	ENST00000305921.3:c.1719G>T	p.Lys573Asn	p.K573N	ENST00000305921	NM_003620.3	573	aaG/aaT																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740837	58740837	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200809297		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	195	321	0	ENST00000305921.3:c.1742G>A	p.Arg581Gln	p.R581Q	ENST00000305921	NM_003620.3	581	cGa/cAa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761145	59761145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	40	329	0	ENST00000259008.2:c.3262C>A	p.His1088Asn	p.H1088N	ENST00000259008	NM_032043.2	1088	Cat/Aat																																																																															
CD79B	974	MSKCC	GRCh37	17	62007560	62007560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	152	298	0	ENST00000392795.3:c.307G>A	p.Glu103Lys	p.E103K	ENST00000392795	NM_001039933.1	103	Gaa/Aaa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117539	70117539	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	146	263	0	ENST00000245479.2:c.7C>A	p.Leu3Ile	p.L3I	ENST00000245479	NM_000346.3	3	Ctc/Atc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210733	5210733	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779302415		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	174	304	0	ENST00000357368.4:c.5318C>T	p.Ser1773Leu	p.S1773L	ENST00000357368	NM_002850.3	1773	tCg/tTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10283825	10283825	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	213	239	0	ENST00000340748.4:c.661G>T	p.Glu221Ter	p.E221*	ENST00000340748		221	Gaa/Taa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349196	15349196	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	136	240	0	ENST00000263377.2:c.4081C>A	p.Leu1361Ile	p.L1361I	ENST00000263377	NM_058243.2	1361	Ctt/Att																																																																															
JAK3	3718	MSKCC	GRCh37	19	17950393	17950393	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777849274		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	127	283	1	ENST00000458235.1:c.1334G>A	p.Arg445Gln	p.R445Q	ENST00000458235	NM_000215.3	445	cGa/cAa																																																																															
CD79A	973	MSKCC	GRCh37	19	42383648	42383648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	68	291	0	ENST00000221972.3:c.423G>T	p.Lys141Asn	p.K141N	ENST00000221972	NM_021601.3	141	aaG/aaT																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45872210	45872210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	160	287	0	ENST00000391945.4:c.224G>T	p.Arg75Ile	p.R75I	ENST00000391945	NM_000400.3	75	aGa/aTa																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422005	47422005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	201	333	0	ENST00000404338.3:c.73G>A	p.Glu25Lys	p.E25K	ENST00000404338	NM_004491.4	25	Gag/Aag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25976476	25976476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	192	202	0	ENST00000435504.4:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000435504		357	Cga/Tga																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068357	26068357	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	127	191	0	ENST00000435504.4:c.133G>T	p.Glu45Ter	p.E45*	ENST00000435504		45	Gaa/Taa																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46611698	46611698	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770192015		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	175	305	1	ENST00000263734.3:c.2512G>A	p.Glu838Lys	p.E838K	ENST00000263734	NM_001430.4	838	Gaa/Aaa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47690230	47690230	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs63749947		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	129	275	0	ENST00000233146.2:c.1447G>T	p.Glu483Ter	p.E483*	ENST00000233146	NM_000251.2	483	Gaa/Taa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030755	48030755	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	38	310	0	ENST00000234420.5:c.3369A>C	p.Glu1123Asp	p.E1123D	ENST00000234420	NM_000179.2	1123	gaA/gaC																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266546	198266546	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	129	297	0	ENST00000335508.6:c.2290T>G	p.Tyr764Asp	p.Y764D	ENST00000335508	NM_012433.2	764	Tac/Gac																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198269824	198269824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	202	220	0	ENST00000335508.6:c.1515G>T	p.Lys505Asn	p.K505N	ENST00000335508	NM_012433.2	505	aaG/aaT																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113377	209113377	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	176	231	0	ENST00000345146.2:c.130T>G	p.Leu44Val	p.L44V	ENST00000345146	NM_005896.2	44	Tta/Gta																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023982	31023983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	169	370	0	ENST00000375687.4:c.3473dup	p.Asn1158LysfsTer6	p.N1158Kfs*6	ENST00000375687	NM_015338.5	1156	gga/ggAa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31389107	31389107	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749860839		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	192	275	0	ENST00000328111.2:c.2020G>A	p.Glu674Lys	p.E674K	ENST00000328111	NM_006892.3	674	Gaa/Aaa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748596	40748596	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754546663		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	120	205	0	ENST00000373198.4:c.2920C>T	p.Arg974Trp	p.R974W	ENST00000373198	NM_133170.3	974	Cgg/Tgg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46281219	46281219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	164	286	0	ENST00000371998.3:c.4016G>T	p.Arg1339Ile	p.R1339I	ENST00000371998		1339	aGa/aTa																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29106017	29106017	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs749963436		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	51	155	0	ENST00000328354.6:c.823G>T	p.Glu275Ter	p.E275*	ENST00000328354	NM_007194.3	275	Gaa/Taa																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121252	29121252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	220	295	0	ENST00000328354.6:c.423G>T	p.Lys141Asn	p.K141N	ENST00000328354	NM_007194.3	141	aaG/aaT																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278118	41278118	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	226	312	0	ENST00000349496.5:c.1994A>G	p.Asp665Gly	p.D665G	ENST00000349496	NM_001904.3	665	gAc/gGc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643362	52643362	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs774153419		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	173	277	0	ENST00000394830.3:c.2534T>C	p.Phe845Ser	p.F845S	ENST00000394830	NM_018313.4	845	tTt/tCt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643768	52643768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	176	248	0	ENST00000394830.3:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000394830	NM_018313.4	710	Cga/Tga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52702662	52702662	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	151	174	0	ENST00000394830.3:c.237-1G>T		p.X79_splice	ENST00000394830	NM_018313.4	79																																																																																
PIK3CB	5291	MSKCC	GRCh37	3	138453486	138453486	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1451809865		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	162	219	0	ENST00000289153.2:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000289153	NM_006219.2	321	cGa/cAa																																																																															
ATR	545	MSKCC	GRCh37	3	142176504	142176504	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1196005889		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	185	202	0	ENST00000350721.4:c.7597C>T	p.Arg2533Ter	p.R2533*	ENST00000350721	NM_001184.3	2533	Cga/Tga																																																																															
ATR	545	MSKCC	GRCh37	3	142178136	142178136	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	172	256	0	ENST00000350721.4:c.7282C>A	p.Leu2428Ile	p.L2428I	ENST00000350721	NM_001184.3	2428	Ctc/Atc																																																																															
ATR	545	MSKCC	GRCh37	3	142234315	142234315	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	177	212	0	ENST00000350721.4:c.4425G>T	p.Lys1475Asn	p.K1475N	ENST00000350721	NM_001184.3	1475	aaG/aaT																																																																															
ATR	545	MSKCC	GRCh37	3	142278281	142278281	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs746970647		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	138	212	0	ENST00000350721.4:c.1544G>A	p.Arg515His	p.R515H	ENST00000350721	NM_001184.3	515	cGt/cAt																																																																															
ATR	545	MSKCC	GRCh37	3	142281802	142281802	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	196	270	0	ENST00000350721.4:c.442G>T	p.Glu148Ter	p.E148*	ENST00000350721	NM_001184.3	148	Gaa/Taa																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260151	149260151	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1307297959		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	298	227	0	ENST00000360632.3:c.742C>T	p.Arg248Ter	p.R248*	ENST00000360632	NM_015472.4	248	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	229	286	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917681	178917681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	100	207	0	ENST00000263967.3:c.556G>T	p.Asp186Tyr	p.D186Y	ENST00000263967	NM_006218.2	186	Gat/Tat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922301	178922301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	101	168	0	ENST00000263967.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000263967	NM_006218.2	357	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952012	178952012	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	167	267	0	ENST00000263967.3:c.3067C>T	p.Arg1023Ter	p.R1023*	ENST00000263967	NM_006218.2	1023	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	203	261	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182679095	182679095	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	54	221	0	ENST00000292782.4:c.439G>T	p.Glu147Ter	p.E147*	ENST00000292782	NM_020640.2	147	Gaa/Taa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55136805	55136805	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41279521		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	117	176	0	ENST00000257290.5:c.1127G>A	p.Arg376Gln	p.R376Q	ENST00000257290	NM_006206.4	376	cGa/cAa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144115	55144115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	155	239	0	ENST00000257290.5:c.1944G>T	p.Met648Ile	p.M648I	ENST00000257290	NM_006206.4	648	atG/atT																																																																															
TET2	54790	MSKCC	GRCh37	4	106197443	106197443	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1452689450		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	138	314	0	ENST00000380013.4:c.5776C>T	p.Arg1926Cys	p.R1926C	ENST00000380013	NM_001127208.2	1926	Cgt/Tgt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539690	187539690	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs748166431		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	207	312	0	ENST00000441802.2:c.8050G>T	p.Glu2684Ter	p.E2684*	ENST00000441802	NM_005245.3	2684	Gaa/Taa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539951	187539951	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777631605		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	193	285	0	ENST00000441802.2:c.7789C>T	p.Arg2597Ter	p.R2597*	ENST00000441802	NM_005245.3	2597	Cga/Tga																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876393	35876393	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	15	345	0	ENST00000303115.3:c.1185G>T	p.Lys395Asn	p.K395N	ENST00000303115	NM_002185.3	395	aaG/aaT																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38944618	38944618	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	120	214	0	ENST00000357387.3:c.4843G>T	p.Glu1615Ter	p.E1615*	ENST00000357387	NM_152756.3	1615	Gaa/Taa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38978751	38978751	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1432686344		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	100	191	0	ENST00000357387.3:c.755G>T	p.Arg252Ile	p.R252I	ENST00000357387	NM_152756.3	252	aGa/aTa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754638	57754638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	151	247	0	ENST00000274289.3:c.409C>A	p.Leu137Ile	p.L137I	ENST00000274289	NM_006622.3	137	Ctt/Att																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67575550	67575550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	80	232	0	ENST00000274335.5:c.623C>A	p.Ser208Tyr	p.S208Y	ENST00000274335		208	tCt/tAt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576407	67576407	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201598843		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	185	266	0	ENST00000274335.5:c.686C>T	p.Ser229Leu	p.S229L	ENST00000274335		229	tCg/tTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	30	260	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																															
MSH3	4437	MSKCC	GRCh37	5	79961132	79961137	+	missense_variant	Missense_Mutation	ONP	GCAAAG	GCAAAG	ACAAAT			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	88	271	0	ENST00000265081.6:c.529_534delinsACAAAT	p.Ala177_Lys178delinsThrAsn	p.A177_K178delinsTN	ENST00000265081	NM_002439.4	177	GCAAAG/ACAAAT																																																																															
RASA1	5921	MSKCC	GRCh37	5	86649005	86649005	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	114	211	0	ENST00000274376.6:c.1285G>T	p.Glu429Ter	p.E429*	ENST00000274376	NM_002890.2	429	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	192	254	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057229	180057229	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754692331		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	164	324	0	ENST00000261937.6:c.509G>A	p.Arg170His	p.R170H	ENST00000261937	NM_182925.4	170	cGc/cAc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816896	32816896	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs1159721335		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	350	235	0	ENST00000354258.4:c.1429-1G>T		p.X477_splice	ENST00000354258	NM_000593.5	477																																																																																
PNRC1	10957	MSKCC	GRCh37	6	89793716	89793716	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754149624		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	204	320	0	ENST00000336032.3:c.785C>T	p.Ser262Leu	p.S262L	ENST00000336032	NM_006813.2	262	tCg/tTg																																																																															
FYN	2534	MSKCC	GRCh37	6	112024169	112024169	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1465963577		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	181	267	0	ENST00000368678.4:c.616C>T	p.Arg206Cys	p.R206C	ENST00000368678		206	Cgc/Tgc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117622241	117622241	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs148104006		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	119	246	0	ENST00000368508.3:c.6629G>T	p.Arg2210Ile	p.R2210I	ENST00000368508	NM_002944.2	2210	aGa/aTa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117715865	117715865	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	40	236	0	ENST00000368508.3:c.893A>C	p.Lys298Thr	p.K298T	ENST00000368508	NM_002944.2	298	aAa/aCa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005365	150005365	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs918439730		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	161	336	0	ENST00000253339.5:c.860G>A	p.Arg287Gln	p.R287Q	ENST00000253339		287	cGa/cAa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2974166	2974166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	172	291	0	ENST00000396946.4:c.1439C>T	p.Ser480Leu	p.S480L	ENST00000396946	NM_032415.4	480	tCg/tTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140500260	140500260	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	234	299	0	ENST00000288602.6:c.882C>A	p.Phe294Leu	p.F294L	ENST00000288602	NM_004333.4	294	ttC/ttA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151856004	151856004	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201674711		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	220	293	0	ENST00000262189.6:c.11614G>A	p.Glu3872Lys	p.E3872K	ENST00000262189	NM_170606.2	3872	Gaa/Aaa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38272320	38272320	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751038400		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	205	317	0	ENST00000425967.3:c.2047G>A	p.Asp683Asn	p.D683N	ENST00000425967	NM_001174067.1	683	Gac/Aac																																																																															
PREX2	80243	MSKCC	GRCh37	8	68934278	68934278	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	101	208	0	ENST00000288368.4:c.344A>C	p.Lys115Thr	p.K115T	ENST00000288368	NM_024870.2	115	aAg/aCg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70971050	70971050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	128	256	0	ENST00000276594.2:c.1211G>T	p.Arg404Ile	p.R404I	ENST00000276594	NM_024504.3	404	aGa/aTa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70971059	70971059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	28	259	0	ENST00000276594.2:c.1202G>T	p.Arg401Ile	p.R401I	ENST00000276594	NM_024504.3	401	aGa/aTa																																																																															
NBN	4683	MSKCC	GRCh37	8	90982713	90982713	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	40	270	0	ENST00000265433.3:c.775G>T	p.Glu259Ter	p.E259*	ENST00000265433	NM_002485.4	259	Gaa/Taa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054768	5054768	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	169	258	0	ENST00000381652.3:c.820G>T	p.Glu274Ter	p.E274*	ENST00000381652	NM_004972.3	274	Gaa/Taa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126756	5126756	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	153	271	0	ENST00000381652.3:c.3364C>T	p.Arg1122Ter	p.R1122*	ENST00000381652	NM_004972.3	1122	Cga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484298	8484298	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs7869444		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	28	272	0	ENST00000356435.5:c.3234G>T	p.Glu1078Asp	p.E1078D	ENST00000356435		1078	gaG/gaT																																																																															
TEK	7010	MSKCC	GRCh37	9	27185512	27185512	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	196	242	1	ENST00000380036.4:c.1212C>A	p.Phe404Leu	p.F404L	ENST00000380036	NM_000459.3	404	ttC/ttA																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87322770	87322770	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781137734		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	170	203	0	ENST00000277120.3:c.371G>A	p.Arg124Gln	p.R124Q	ENST00000277120		124	cGa/cAa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891367	101891367	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	143	237	0	ENST00000374994.4:c.328G>T	p.Glu110Ter	p.E110*	ENST00000374994	NM_004612.2	110	Gaa/Taa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900171	101900171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	191	260	0	ENST00000374994.4:c.605C>T	p.Ala202Val	p.A202V	ENST00000374994	NM_004612.2	202	gCg/gTg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101908873	101908873	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs200595614		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	188	278	0	ENST00000374994.4:c.1237C>T	p.Arg413Ter	p.R413*	ENST00000374994	NM_004612.2	413	Cga/Tga																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44928846	44928846	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	27	96	0	ENST00000377967.4:c.1946C>A	p.Ser649Ter	p.S649*	ENST00000377967	NM_021140.2	649	tCa/tAa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53240738	53240738	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	189	137	0	ENST00000375401.3:c.1342G>T	p.Glu448Ter	p.E448*	ENST00000375401	NM_004187.3	448	Gaa/Taa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9770561	9770561	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	190	265	0	ENST00000377346.4:c.48G>T	p.Glu16Asp	p.E16D	ENST00000377346	NM_005026.3	16	gaG/gaT																																																																															
MTOR	2475	MSKCC	GRCh37	1	11300480	11300480	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	31	294	0	ENST00000361445.4:c.1666G>T	p.Gly556Cys	p.G556C	ENST00000361445	NM_004958.3	556	Ggc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16247467	16247467	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	197	214	0	ENST00000375759.3:c.1738A>C	p.Asn580His	p.N580H	ENST00000375759	NM_015001.2	580	Aat/Cat																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798955	45798955	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	31	369	0	ENST00000372115.3:c.346+2T>C		p.X116_splice	ENST00000372115	NM_001048171.1	116																																																																																
PIK3R3	8503	MSKCC	GRCh37	1	46527631	46527631	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749337134		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	155	245	0	ENST00000262741.5:c.734G>A	p.Arg245His	p.R245H	ENST00000262741	NM_003629.3	245	cGc/cAc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	71873206	71873206	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	224	285	0	ENST00000357731.5:c.988T>G	p.Phe330Val	p.F330V	ENST00000357731	NM_173808.2	330	Ttc/Gtc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748368	162748368	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	164	261	0	ENST00000367921.3:c.2284-2A>C		p.X762_splice	ENST00000367921	NM_006182.2	762																																																																																
CDC73	79577	MSKCC	GRCh37	1	193218908	193218908	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	188	244	1	ENST00000367435.3:c.1466T>C	p.Val489Ala	p.V489A	ENST00000367435	NM_024529.4	489	gTt/gCt																																																																															
IL10	3586	MSKCC	GRCh37	1	206942050	206942050	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	161	259	0	ENST00000423557.1:c.468A>C	p.Lys156Asn	p.K156N	ENST00000423557	NM_000572.2	156	aaA/aaC																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231487305	231487305	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752112777		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	99	300	0	ENST00000295050.7:c.706G>A	p.Ala236Thr	p.A236T	ENST00000295050	NM_032018.5	236	Gca/Aca																																																																															
AKT3	10000	MSKCC	GRCh37	1	243776992	243776992	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	144	255	0	ENST00000263826.5:c.677A>C	p.Glu226Ala	p.E226A	ENST00000263826	NM_005465.4	226	gAa/gCa																																																																															
RET	5979	MSKCC	GRCh37	10	43606734	43606734	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760832715		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	83	347	0	ENST00000355710.3:c.1343A>G	p.Asn448Ser	p.N448S	ENST00000355710	NM_020975.4	448	aAc/aGc																																																																															
TET1	80312	MSKCC	GRCh37	10	70405941	70405941	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	110	290	0	ENST00000373644.4:c.3455C>A	p.Ser1152Tyr	p.S1152Y	ENST00000373644	NM_030625.2	1152	tCc/tAc																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724240	112724240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	188	283	0	ENST00000369452.4:c.124G>T	p.Glu42Ter	p.E42*	ENST00000369452	NM_007373.3	42	Gaa/Taa																																																																															
LMO1	4004	MSKCC	GRCh37	11	8251951	8251951	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	161	343	0	ENST00000335790.3:c.126G>T	p.Lys42Asn	p.K42N	ENST00000335790	NM_002315.2	42	aaG/aaT																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47598975	47598975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	185	282	0	ENST00000395288.2:c.577G>A	p.Asp193Asn	p.D193N	ENST00000395288	NM_016506.5	193	Gat/Aat																																																																															
PGR	5241	MSKCC	GRCh37	11	100933312	100933312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	187	248	0	ENST00000325455.5:c.2078G>A	p.Ser693Asn	p.S693N	ENST00000325455	NM_001202474.3	693	aGc/aAc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125514093	125514093	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	206	309	0	ENST00000428830.2:c.1031T>G	p.Phe344Cys	p.F344C	ENST00000428830	NM_001114121.2	344	tTt/tGt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12037471	12037471	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	228	281	0	ENST00000396373.4:c.1102T>G	p.Phe368Val	p.F368V	ENST00000396373	NM_001987.4	368	Ttc/Gtc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435496	18435496	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	150	253	0	ENST00000266497.5:c.481G>T	p.Glu161Ter	p.E161*	ENST00000266497		161	Gaa/Taa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245783	46245783	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	37	327	0	ENST00000334344.6:c.3877C>A	p.Leu1293Ile	p.L1293I	ENST00000334344	NM_152641.2	1293	Ctt/Att																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437694	49437694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	173	344	0	ENST00000301067.7:c.5276G>A	p.Arg1759His	p.R1759H	ENST00000301067	NM_003482.3	1759	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49442536	49442536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	64	250	0	ENST00000301067.7:c.4037G>A	p.Ser1346Asn	p.S1346N	ENST00000301067	NM_003482.3	1346	aGc/aAc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885790	111885790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	226	347	0	ENST00000341259.2:c.1412C>T	p.Ser471Phe	p.S471F	ENST00000341259	NM_005475.2	471	tCc/tTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133249211	133249211	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	64	275	0	ENST00000320574.5:c.1686+2T>C		p.X562_splice	ENST00000320574	NM_006231.2	562																																																																																
FLT3	2322	MSKCC	GRCh37	13	28609647	28609647	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	38	239	0	ENST00000241453.7:c.1582C>A	p.Leu528Ile	p.L528I	ENST00000241453	NM_004119.2	528	Ctt/Att																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877422	28877422	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	67	250	0	ENST00000282397.4:c.3899T>C	p.Val1300Ala	p.V1300A	ENST00000282397	NM_002019.4	1300	gTc/gCc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28895606	28895606	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	30	273	0	ENST00000282397.4:c.3168A>C	p.Lys1056Asn	p.K1056N	ENST00000282397	NM_002019.4	1056	aaA/aaC																																																																															
FLT1	2321	MSKCC	GRCh37	13	29004226	29004226	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	74	252	0	ENST00000282397.4:c.1067C>A	p.Ser356Tyr	p.S356Y	ENST00000282397	NM_002019.4	356	tCt/tAt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29005380	29005380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	30	266	0	ENST00000282397.4:c.881G>A	p.Ser294Asn	p.S294N	ENST00000282397	NM_002019.4	294	aGt/aAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907426	32907426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	168	300	0	ENST00000380152.3:c.1811A>C	p.Lys604Thr	p.K604T	ENST00000380152		604	aAa/aCa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912730	32912730	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	173	291	0	ENST00000380152.3:c.4238A>G	p.Lys1413Arg	p.K1413R	ENST00000380152		1413	aAa/aGa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912826	32912826	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	140	304	0	ENST00000380152.3:c.4334A>C	p.Lys1445Thr	p.K1445T	ENST00000380152		1445	aAa/aCa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32968996	32968996	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	208	340	0	ENST00000380152.3:c.9427T>G	p.Phe3143Val	p.F3143V	ENST00000380152		3143	Ttt/Gtt																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133690	41133690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	192	295	0	ENST00000379561.5:c.1938G>T	p.Lys646Asn	p.K646N	ENST00000379561	NM_002015.3	646	aaG/aaT																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281724	49281724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	164	323	0	ENST00000282018.3:c.771C>A	p.Phe257Leu	p.F257L	ENST00000282018	NM_020377.2	257	ttC/ttA																																																																															
DIS3	22894	MSKCC	GRCh37	13	73351625	73351625	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	193	255	0	ENST00000377767.4:c.587A>G	p.Glu196Gly	p.E196G	ENST00000377767	NM_014953.3	196	gAa/gGa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30132916	30132916	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	131	228	0	ENST00000331968.5:c.685G>T	p.Glu229Ter	p.E229*	ENST00000331968	NM_002742.2	229	Gag/Tag																																																																															
TSHR	7253	MSKCC	GRCh37	14	81528515	81528515	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	23	241	1	ENST00000298171.2:c.194G>T	p.Arg65Ile	p.R65I	ENST00000298171	NM_000369.2	65	aGa/aTa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609544	81609544	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	93	383	0	ENST00000298171.2:c.1142T>C	p.Phe381Ser	p.F381S	ENST00000298171	NM_000369.2	381	tTt/tCt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562597	95562597	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	110	343	0	ENST00000343455.3:c.4660A>C	p.Ile1554Leu	p.I1554L	ENST00000343455	NM_177438.2	1554	Att/Ctt																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40678669	40678669	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	35	244	0	ENST00000249776.8:c.411A>C	p.Lys137Asn	p.K137N	ENST00000249776	NM_033286.3	137	aaA/aaC																																																																															
MGA	23269	MSKCC	GRCh37	15	42054549	42054549	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	181	213	0	ENST00000219905.7:c.7733A>G	p.Asp2578Gly	p.D2578G	ENST00000219905	NM_001164273.1	2578	gAc/gGc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43699769	43699769	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	190	305	0	ENST00000382044.4:c.5747-1G>T		p.X1916_splice	ENST00000382044	NM_001141980.1	1916																																																																																
MAP2K1	5604	MSKCC	GRCh37	15	66777455	66777455	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	137	299	0	ENST00000307102.5:c.821T>G	p.Met274Arg	p.M274R	ENST00000307102	NM_002755.3	274	aTg/aGg																																																																															
BLM	641	MSKCC	GRCh37	15	91354548	91354548	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	227	299	0	ENST00000355112.3:c.3988A>G	p.Thr1330Ala	p.T1330A	ENST00000355112	NM_000057.2	1330	Acc/Gcc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99459222	99459222	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	129	253	0	ENST00000268035.6:c.1858G>T	p.Ala620Ser	p.A620S	ENST00000268035	NM_000875.3	620	Gca/Tca																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3827614	3827614	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	169	205	0	ENST00000262367.5:c.2158G>T	p.Gly720Trp	p.G720W	ENST00000262367	NM_004380.2	720	Ggg/Tgg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916126	9916126	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	128	257	0	ENST00000330684.3:c.2163A>C	p.Lys721Asn	p.K721N	ENST00000330684	NM_001134407.1	721	aaA/aaC																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14024699	14024699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	186	243	0	ENST00000311895.7:c.925C>T	p.Leu309Phe	p.L309F	ENST00000311895	NM_005236.2	309	Ctt/Ttt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828574	72828574	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	39	329	0	ENST00000268489.5:c.8007G>T	p.Lys2669Asn	p.K2669N	ENST00000268489	NM_006885.3	2669	aaG/aaT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992735	72992735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	37	326	0	ENST00000268489.5:c.1310G>T	p.Gly437Val	p.G437V	ENST00000268489	NM_006885.3	437	gGg/gTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81922842	81922842	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1381969513		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	41	229	0	ENST00000359376.3:c.831G>A	p.Met277Ile	p.M277I	ENST00000359376	NM_002661.3	277	atG/atA																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942053	81942053	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	124	284	0	ENST00000359376.3:c.1590G>T	p.Glu530Asp	p.E530D	ENST00000359376	NM_002661.3	530	gaG/gaT																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81965191	81965191	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	195	339	0	ENST00000359376.3:c.2671G>T	p.Asp891Tyr	p.D891Y	ENST00000359376	NM_002661.3	891	Gac/Tac																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349613	89349613	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	177	327	0	ENST00000301030.4:c.3337T>C	p.Trp1113Arg	p.W1113R	ENST00000301030	NM_001256183.1	1113	Tgg/Cgg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350613	89350613	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	179	258	0	ENST00000301030.4:c.2337G>T	p.Lys779Asn	p.K779N	ENST00000301030	NM_001256183.1	779	aaG/aaT																																																																															
FANCA	2175	MSKCC	GRCh37	16	89880933	89880933	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	166	179	0	ENST00000389301.3:c.278T>G	p.Phe93Cys	p.F93C	ENST00000389301	NM_000135.2	93	tTt/tGt																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217651	7217651	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	40	300	0	ENST00000380728.2:c.276A>C	p.Lys92Asn	p.K92N	ENST00000380728		92	aaA/aaC																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961250	15961250	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148052050		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	192	295	0	ENST00000268712.3:c.6139C>T	p.Arg2047Trp	p.R2047W	ENST00000268712	NM_006311.3	2047	Cgg/Tgg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15976812	15976812	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	167	257	0	ENST00000268712.3:c.3742G>T	p.Glu1248Ter	p.E1248*	ENST00000268712	NM_006311.3	1248	Gaa/Taa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16012145	16012145	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	75	219	0	ENST00000268712.3:c.2137G>T	p.Asp713Tyr	p.D713Y	ENST00000268712	NM_006311.3	713	Gat/Tat																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16049768	16049768	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	181	254	0	ENST00000268712.3:c.1004A>C	p.Glu335Ala	p.E335A	ENST00000268712	NM_006311.3	335	gAa/gCa																																																																															
NF1	4763	MSKCC	GRCh37	17	29654716	29654716	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	33	323	0	ENST00000358273.4:c.5468C>A	p.Ser1823Tyr	p.S1823Y	ENST00000358273	NM_001042492.2	1823	tCt/tAt																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40458428	40458428	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	10	132	0	ENST00000345506.4:c.1643A>G	p.Tyr548Cys	p.Y548C	ENST00000345506	NM_003152.3	548	tAc/tGc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40459702	40459702	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	84	354	0	ENST00000345506.4:c.1867G>T	p.Glu623Ter	p.E623*	ENST00000345506	NM_003152.3	623	Gaa/Taa																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805388	46805388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	32	324	0	ENST00000290295.7:c.568C>T	p.Pro190Ser	p.P190S	ENST00000290295	NM_006361.5	190	Cca/Tca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435354	56435354	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	162	383	0	ENST00000407977.2:c.1783del	p.Asp595IlefsTer105	p.D595Ifs*105	ENST00000407977		595	Gat/at																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740399	58740399	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1413528897		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	182	304	0	ENST00000305921.3:c.1304A>G	p.His435Arg	p.H435R	ENST00000305921	NM_003620.3	435	cAt/cGt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59770836	59770836	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	58	243	0	ENST00000259008.2:c.2530C>A	p.Leu844Ile	p.L844I	ENST00000259008	NM_032043.2	844	Cta/Ata																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66521902	66521902	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	167	231	0	ENST00000358598.2:c.557T>C	p.Val186Ala	p.V186A	ENST00000358598	NM_212471.2	186	gTt/gCt																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66522007	66522007	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	67	239	0	ENST00000358598.2:c.662T>C	p.Val221Ala	p.V221A	ENST00000358598	NM_212471.2	221	gTg/gCg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39567864	39567864	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	113	209	0	ENST00000262039.4:c.618+2T>C		p.X206_splice	ENST00000262039	NM_002647.2	206																																																																																
SERPINB3	6317	MSKCC	GRCh37	18	61324598	61324598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	86	330	0	ENST00000283752.5:c.518C>T	p.Thr173Ile	p.T173I	ENST00000283752	NM_006919.2	173	aCa/aTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1218449	1218449	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	155	275	0	ENST00000326873.7:c.324A>C	p.Lys108Asn	p.K108N	ENST00000326873	NM_000455.4	108	aaA/aaC																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245991	5245991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	41	350	0	ENST00000357368.4:c.784G>A	p.Val262Met	p.V262M	ENST00000357368	NM_002850.3	262	Gtg/Atg																																																																															
INSR	3643	MSKCC	GRCh37	19	7141812	7141812	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	81	251	0	ENST00000302850.5:c.2558T>G	p.Ile853Ser	p.I853S	ENST00000302850	NM_000208.2	853	aTt/aGt																																																																															
INSR	3643	MSKCC	GRCh37	19	7174659	7174659	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	29	289	0	ENST00000302850.5:c.1058C>A	p.Ser353Tyr	p.S353Y	ENST00000302850	NM_000208.2	353	tCt/tAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138509	11138509	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	159	256	0	ENST00000344626.4:c.3265C>A	p.Leu1089Ile	p.L1089I	ENST00000344626	NM_003072.3	1089	Ctt/Att																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15278186	15278186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	155	288	0	ENST00000263388.2:c.5236G>A	p.Asp1746Asn	p.D1746N	ENST00000263388	NM_000435.2	1746	Gat/Aat																																																																															
UPF1	5976	MSKCC	GRCh37	19	18966787	18966787	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	80	318	0	ENST00000262803.5:c.1598A>G	p.Lys533Arg	p.K533R	ENST00000262803	NM_002911.3	533	aAg/aGg																																																																															
ERF	2077	MSKCC	GRCh37	19	42752729	42752729	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	119	250	0	ENST00000222329.4:c.1535A>C	p.Lys512Thr	p.K512T	ENST00000222329	NM_006494.2	512	aAg/aCg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424261	47424261	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs780870433		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	40	299	0	ENST00000404338.3:c.2329T>G	p.Leu777Val	p.L777V	ENST00000404338	NM_004491.4	777	Ttg/Gtg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966508	25966508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	94	294	1	ENST00000435504.4:c.2698C>A	p.Pro900Thr	p.P900T	ENST00000435504		900	Cct/Act																																																																															
ALK	238	MSKCC	GRCh37	2	29416320	29416320	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1296992304		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	164	347	0	ENST00000389048.3:c.4633G>A	p.Val1545Ile	p.V1545I	ENST00000389048	NM_004304.4	1545	Gtt/Att																																																																															
ALK	238	MSKCC	GRCh37	2	29420516	29420516	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	178	244	0	ENST00000389048.3:c.3965T>G	p.Ile1322Ser	p.I1322S	ENST00000389048	NM_004304.4	1322	aTc/aGc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39249989	39249989	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	37	245	0	ENST00000402219.2:c.1580C>A	p.Ser527Tyr	p.S527Y	ENST00000402219	NM_005633.3	527	tCt/tAt																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47607022	47607022	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	174	277	0	ENST00000263735.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000263735	NM_002354.2	258	Gaa/Taa																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631538	67631538	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057087481		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	185	297	0	ENST00000272342.5:c.1724C>A	p.Ser575Tyr	p.S575Y	ENST00000272342	NM_019002.3	575	tCt/tAt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99189362	99189362	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	32	263	0	ENST00000074304.5:c.2618A>G	p.Asn873Ser	p.N873S	ENST00000074304	NM_001134224.1	873	aAc/aGc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158655987	158655987	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	162	256	0	ENST00000263640.3:c.19A>C	p.Ile7Leu	p.I7L	ENST00000263640	NM_001105.4	7	Att/Ctt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095880	178095880	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	35	317	0	ENST00000397062.3:c.1451T>C	p.Met484Thr	p.M484T	ENST00000397062	NM_006164.4	484	aTg/aCg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209104605	209104605	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs940962759		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	29	229	0	ENST00000345146.2:c.973A>G	p.Thr325Ala	p.T325A	ENST00000345146	NM_005896.2	325	Acg/Gcg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225449682	225449682	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	88	178	0	ENST00000264414.4:c.45G>T	p.Lys15Asn	p.K15N	ENST00000264414	NM_003590.4	15	aaG/aaT																																																																															
ERG	2078	MSKCC	GRCh37	21	39755729	39755729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	174	298	0	ENST00000288319.7:c.1036G>A	p.Glu346Lys	p.E346K	ENST00000288319	NM_182918.3	346	Gag/Aag																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288116	21288116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1301110218		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	220	248	0	ENST00000354336.3:c.361G>A	p.Ala121Thr	p.A121T	ENST00000354336	NM_005207.3	121	Gca/Aca																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445458	29445458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	112	291	0	ENST00000544604.2:c.1289C>T	p.Ala430Val	p.A430V	ENST00000544604	NM_001206998.1	430	gCt/gTt																																																																															
PPARG	5468	MSKCC	GRCh37	3	12422945	12422945	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	33	269	0	ENST00000287820.6:c.435A>C	p.Lys145Asn	p.K145N	ENST00000287820	NM_015869.4	145	aaA/aaC																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267215	41267215	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	254	329	0	ENST00000349496.5:c.799G>T	p.Glu267Ter	p.E267*	ENST00000349496	NM_001904.3	267	Gaa/Taa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610618	52610618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	193	264	1	ENST00000394830.3:c.3555C>A	p.Phe1185Leu	p.F1185L	ENST00000394830	NM_018313.4	1185	ttC/ttA																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981582	63981582	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs865955432		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	203	401	0	ENST00000295900.6:c.2084C>T	p.Ala695Val	p.A695V	ENST00000295900	NM_000333.3	695	gCc/gTc																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73113244	73113244	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	62	253	0	ENST00000356692.5:c.585G>T	p.Glu195Asp	p.E195D	ENST00000356692		195	gaG/gaT																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448492	89448492	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	142	296	0	ENST00000336596.2:c.1456A>C	p.Ile486Leu	p.I486L	ENST00000336596	NM_005233.5	486	Att/Ctt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89478279	89478279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	102	187	0	ENST00000336596.2:c.2098G>A	p.Glu700Lys	p.E700K	ENST00000336596	NM_005233.5	700	Gaa/Aaa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138403618	138403618	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	164	207	0	ENST00000289153.2:c.2164T>G	p.Leu722Val	p.L722V	ENST00000289153	NM_006219.2	722	Tta/Gta																																																																															
ATR	545	MSKCC	GRCh37	3	142272852	142272852	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	122	228	0	ENST00000350721.4:c.2347A>C	p.Ile783Leu	p.I783L	ENST00000350721	NM_001184.3	783	Ata/Cta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916856	178916856	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	134	282	0	ENST00000263967.3:c.243A>C	p.Glu81Asp	p.E81D	ENST00000263967	NM_006218.2	81	gaA/gaC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952146	178952146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	154	216	0	ENST00000263967.3:c.3201G>T	p.Leu1067Phe	p.L1067F	ENST00000263967	NM_006218.2	1067	ttG/ttT																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186503748	186503748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	37	236	0	ENST00000323963.5:c.425G>A	p.Arg142Gln	p.R142Q	ENST00000323963		142	cGa/cAa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127435	55127435	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	197	314	0	ENST00000257290.5:c.223G>T	p.Glu75Ter	p.E75*	ENST00000257290	NM_006206.4	75	Gaa/Taa																																																																															
KIT	3815	MSKCC	GRCh37	4	55595640	55595640	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	147	216	0	ENST00000288135.5:c.2130G>T	p.Lys710Asn	p.K710N	ENST00000288135	NM_000222.2	710	aaG/aaT																																																																															
REST	5978	MSKCC	GRCh37	4	57777437	57777437	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	181	292	0	ENST00000309042.7:c.633C>A	p.Phe211Leu	p.F211L	ENST00000309042	NM_005612.4	211	ttC/ttA																																																																															
REST	5978	MSKCC	GRCh37	4	57796352	57796352	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs538429646		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	41	335	0	ENST00000309042.7:c.1328A>G	p.Asn443Ser	p.N443S	ENST00000309042	NM_005612.4	443	aAt/aGt																																																																															
ALB	213	MSKCC	GRCh37	4	74283998	74283998	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	147	250	0	ENST00000295897.4:c.1622C>A	p.Ser541Tyr	p.S541Y	ENST00000295897	NM_000477.5	541	tCt/tAt																																																																															
TET2	54790	MSKCC	GRCh37	4	106157027	106157027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	223	337	1	ENST00000380013.4:c.1928C>T	p.Ser643Phe	p.S643F	ENST00000380013	NM_001127208.2	643	tCc/tTc																																																																															
TET2	54790	MSKCC	GRCh37	4	106157785	106157785	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	165	264	0	ENST00000380013.4:c.2686C>A	p.Leu896Ile	p.L896I	ENST00000380013	NM_001127208.2	896	Cta/Ata																																																																															
GAB1	2549	MSKCC	GRCh37	4	144258395	144258395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	107	231	0	ENST00000262994.4:c.54G>T	p.Glu18Asp	p.E18D	ENST00000262994	NM_002039.3	18	gaG/gaT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534368	187534368	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746965574		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	151	273	0	ENST00000441802.2:c.9358G>A	p.Asp3120Asn	p.D3120N	ENST00000441802	NM_005245.3	3120	Gat/Aat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629774	187629774	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	227	336	0	ENST00000441802.2:c.1208A>C	p.Lys403Thr	p.K403T	ENST00000441802	NM_005245.3	403	aAa/aCa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876283	35876283	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1803814		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	180	314	0	ENST00000303115.3:c.1075G>T	p.Glu359Ter	p.E359*	ENST00000303115	NM_002185.3	359	Gaa/Taa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86674218	86674218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	135	249	0	ENST00000274376.6:c.2350G>A	p.Ala784Thr	p.A784T	ENST00000274376	NM_002890.2	784	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112174929	112174929	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	216	294	0	ENST00000257430.4:c.3638C>A	p.Ser1213Ter	p.S1213*	ENST00000257430	NM_000038.5	1213	tCa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112179151	112179151	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	141	293	0	ENST00000257430.4:c.7860T>A	p.Phe2620Leu	p.F2620L	ENST00000257430	NM_000038.5	2620	ttT/ttA																																																																															
RAD50	10111	MSKCC	GRCh37	5	131927063	131927063	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	174	233	0	ENST00000265335.6:c.1600A>G	p.Thr534Ala	p.T534A	ENST00000265335		534	Aca/Gca																																																																															
RAD50	10111	MSKCC	GRCh37	5	131953780	131953780	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	70	223	0	ENST00000265335.6:c.3183A>C	p.Glu1061Asp	p.E1061D	ENST00000265335		1061	gaA/gaC																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637692	176637692	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	216	327	0	ENST00000439151.2:c.2292G>T	p.Glu764Asp	p.E764D	ENST00000439151	NM_022455.4	764	gaG/gaT																																																																															
NSD1	64324	MSKCC	GRCh37	5	176696776	176696776	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	158	316	0	ENST00000439151.2:c.5477T>C	p.Met1826Thr	p.M1826T	ENST00000439151	NM_022455.4	1826	aTg/aCg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048646	180048646	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	25	326	0	ENST00000261937.6:c.1916G>T	p.Ser639Ile	p.S639I	ENST00000261937	NM_182925.4	639	aGt/aTt																																																																															
IRF4	3662	MSKCC	GRCh37	6	407536	407536	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	210	283	0	ENST00000380956.4:c.1294G>T	p.Glu432Ter	p.E432*	ENST00000380956	NM_001195286.1	432	Gaa/Taa																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31237853	31237853	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	32	359	0	ENST00000376228.5:c.905C>A	p.Ser302Tyr	p.S302Y	ENST00000376228	NM_002117.5	302	tCc/tAc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166763	32166763	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	174	299	0	ENST00000375023.3:c.4475G>T	p.Arg1492Leu	p.R1492L	ENST00000375023	NM_004557.3	1492	cGg/cTg																																																																															
FYN	2534	MSKCC	GRCh37	6	111995752	111995752	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	201	276	0	ENST00000368678.4:c.1346T>G	p.Phe449Cys	p.F449C	ENST00000368678		449	tTt/tGt																																																																															
FYN	2534	MSKCC	GRCh37	6	112017500	112017500	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	163	221	0	ENST00000368678.4:c.1013T>C	p.Val338Ala	p.V338A	ENST00000368678		338	gTc/gCc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117632276	117632276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	135	174	0	ENST00000368508.3:c.6140A>G	p.Tyr2047Cys	p.Y2047C	ENST00000368508	NM_002944.2	2047	tAt/tGt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681070	117681070	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	180	282	0	ENST00000368508.3:c.3550A>G	p.Ile1184Val	p.I1184V	ENST00000368508	NM_002944.2	1184	Atc/Gtc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117683859	117683859	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	64	235	0	ENST00000368508.3:c.3288A>C	p.Lys1096Asn	p.K1096N	ENST00000368508	NM_002944.2	1096	aaA/aaC																																																																															
ROS1	6098	MSKCC	GRCh37	6	117718153	117718153	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	200	284	0	ENST00000368508.3:c.704A>C	p.Lys235Thr	p.K235T	ENST00000368508	NM_002944.2	235	aAa/aCa																																																																															
PARK2	5071	MSKCC	GRCh37	6	161771199	161771199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	71	239	0	ENST00000366898.1:c.1330G>A	p.Glu444Lys	p.E444K	ENST00000366898	NM_004562.2	444	Gag/Aag																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729719	41729719	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	160	318	0	ENST00000242208.4:c.810A>C	p.Lys270Asn	p.K270N	ENST00000242208	NM_002192.2	270	aaA/aaC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268042	55268042	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	184	321	0	ENST00000275493.2:c.2882T>C	p.Phe961Ser	p.F961S	ENST00000275493	NM_005228.3	961	tTc/tCc																																																																															
CDK6	1021	MSKCC	GRCh37	7	92354953	92354953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	210	213	0	ENST00000265734.4:c.524C>T	p.Ala175Val	p.A175V	ENST00000265734	NM_001259.6	175	gCt/gTt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509302	106509302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	179	315	0	ENST00000359195.3:c.1296G>T	p.Gln432His	p.Q432H	ENST00000359195	NM_002649.2	432	caG/caT																																																																															
POT1	25913	MSKCC	GRCh37	7	124467326	124467326	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	140	217	0	ENST00000357628.3:c.1628T>A	p.Val543Asp	p.V543D	ENST00000357628	NM_015450.2	543	gTt/gAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140476881	140476881	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1485437761		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	126	200	0	ENST00000288602.6:c.1525C>T	p.Arg509Ter	p.R509*	ENST00000288602	NM_004333.4	509	Cga/Tga																																																																															
EZH2	2146	MSKCC	GRCh37	7	148506233	148506233	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1451278890		P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	192	267	0	ENST00000320356.2:c.2125G>A	p.Gly709Ser	p.G709S	ENST00000320356	NM_004456.4	709	Ggt/Agt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152008943	152008943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	171	291	0	ENST00000262189.6:c.679G>A	p.Glu227Lys	p.E227K	ENST00000262189	NM_170606.2	227	Gaa/Aaa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187276	38187276	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	104	270	0	ENST00000317025.8:c.1201G>T	p.Glu401Ter	p.E401*	ENST00000317025	NM_023034.1	401	Gag/Tag																																																																															
LYN	4067	MSKCC	GRCh37	8	56912093	56912093	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	155	244	0	ENST00000519728.1:c.1321A>G	p.Lys441Glu	p.K441E	ENST00000519728	NM_002350.3	441	Aaa/Gaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968135	68968135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	161	227	0	ENST00000288368.4:c.1164G>T	p.Met388Ile	p.M388I	ENST00000288368	NM_024870.2	388	atG/atT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69136821	69136821	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	62	222	0	ENST00000288368.4:c.4735A>C	p.Asn1579His	p.N1579H	ENST00000288368	NM_024870.2	1579	Aat/Cat																																																																															
NBN	4683	MSKCC	GRCh37	8	90993007	90993007	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	139	202	0	ENST00000265433.3:c.435A>C	p.Glu145Asp	p.E145D	ENST00000265433	NM_002485.4	145	gaA/gaC																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2181601	2181601	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	184	245	0	ENST00000349721.2:c.4284T>G	p.Ile1428Met	p.I1428M	ENST00000349721	NM_003070.3	1428	atT/atG																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127923187	127923187	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	163	192	0	ENST00000373547.4:c.172-2A>C		p.X58_splice	ENST00000373547	NM_002721.4	58																																																																																
ABL1	25	MSKCC	GRCh37	9	133759359	133759359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	159	235	0	ENST00000318560.5:c.1682C>A	p.Pro561His	p.P561H	ENST00000318560	NM_005157.4	561	cCt/cAt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137309043	137309043	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	122	265	0	ENST00000481739.1:c.650A>C	p.Glu217Ala	p.E217A	ENST00000481739	NM_002957.4	217	gAg/gCg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814948	139814948	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	195	266	0	ENST00000247668.2:c.941T>G	p.Ile314Ser	p.I314S	ENST00000247668	NM_021138.3	314	aTt/aGt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922325	39922325	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	121	95	0	ENST00000378444.4:c.3848-1G>T		p.X1283_splice	ENST00000378444	NM_001123385.1	1283																																																																																
ATRX	546	MSKCC	GRCh37	X	76937787	76937787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	19	166	0	ENST00000373344.5:c.2961G>T	p.Lys987Asn	p.K987N	ENST00000373344	NM_000489.3	987	aaG/aaT																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0070363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	33	270	0				ENST00000310581	NM_198253.2																																																																																	
RAC1	5879	MSKCC	GRCh37	7	6414397	6414397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	12	211	0	ENST00000356142.4:c.31G>A	p.Asp11Asn	p.D11N	ENST00000356142	NM_018890.3	11	Gac/Aac																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591142	67591160	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAATACTTGATGTAAGTAT	CAATACTTGATGTAAGTAT	AAGTA			P-0070363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	107	330	1	ENST00000274335.5:c.1735_1745+8delinsAAGTA		p.X579_splice	ENST00000274335		579																																																																																
FAT1	2195	MSKCC	GRCh37	4	187541886	187541886	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762168387		P-0070375-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	119	524	0	ENST00000441802.2:c.5854G>A	p.Val1952Ile	p.V1952I	ENST00000441802	NM_005245.3	1952	Gtt/Att																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023220	27023229	+	protein_altering_variant	In_Frame_Del	DEL	CTAGGCCCGC	CTAGGCCCGC	A			P-0070375-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	52	401	0	ENST00000324856.7:c.326_335delinsA	p.Pro109_Ala112delinsHis	p.P109_A112delinsH	ENST00000324856	NM_006015.4	109	cCTAGGCCCGCc/cAc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1325430	1325430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	56	364	0	ENST00000381566.1:c.245C>T	p.Ser82Leu	p.S82L	ENST00000381566		82	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0070393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	157	416	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
TET2	54790	MSKCC	GRCh37	4	106157428	106157428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	65	407	0	ENST00000380013.4:c.2329G>T	p.Gly777Cys	p.G777C	ENST00000380013	NM_001127208.2	777	Ggc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829037	72829037	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0070393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	67	422	0	ENST00000268489.5:c.7544C>G	p.Ser2515Ter	p.S2515*	ENST00000268489	NM_006885.3	2515	tCa/tGa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52677294	52677294	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	55	342	0	ENST00000394830.3:c.965A>T	p.Glu322Val	p.E322V	ENST00000394830	NM_018313.4	322	gAa/gTa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245070	46245070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	59	397	0	ENST00000334344.6:c.3164G>A	p.Gly1055Asp	p.G1055D	ENST00000334344	NM_152641.2	1055	gGt/gAt																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260150	149260150	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761556137		P-0070396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	24	326	0	ENST00000360632.3:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000360632	NM_015472.4	248	cGa/cAa																																																																															
EP300	2033	MSKCC	GRCh37	22	41568636	41568636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	73	335	0	ENST00000263253.7:c.4586G>A	p.Arg1529Gln	p.R1529Q	ENST00000263253	NM_001429.3	1529	cGa/cAa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25457216	25457216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	120	368	0	ENST00000264709.3:c.2671C>T	p.Arg891Trp	p.R891W	ENST00000264709	NM_175629.2	891	Cgg/Tgg																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182662914	182662914	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1403059883		P-0070396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	46	232	0	ENST00000292782.4:c.748C>G	p.Gln250Glu	p.Q250E	ENST00000292782	NM_020640.2	250	Caa/Gaa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67569222	67569222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	62	291	0	ENST00000274335.5:c.339G>C	p.Leu113Phe	p.L113F	ENST00000274335		113	ttG/ttC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	414	450	0	ENST00000269305.4:c.535del	p.His179MetfsTer68	p.H179Mfs*68	ENST00000269305	NM_001126112.2	179	Cat/at																																																																															
STAT3	6774	MSKCC	GRCh37	17	40481609	40481609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	265	361	0	ENST00000264657.5:c.1196C>T	p.Ser399Phe	p.S399F	ENST00000264657	NM_139276.2	399	tCc/tTc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157469971	157469980	+	frameshift_variant	Frame_Shift_Del	DEL	GCATGTCTCA	GCATGTCTCA	-			P-0070396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	152	439	0	ENST00000346085.5:c.2768_2777del	p.Met923ArgfsTer13	p.M923Rfs*13	ENST00000346085	NM_020732.3	922	gGCATGTCTCAg/gg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291121	10291121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	271	641	0	ENST00000340748.4:c.350C>T	p.Ala117Val	p.A117V	ENST00000340748		117	gCc/gTc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519666	176519666	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0070396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	75	414	0	ENST00000292408.4:c.938C>G	p.Ser313Ter	p.S313*	ENST00000292408	NM_213647.1	313	tCa/tGa																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230561356	230561356	+	5_prime_UTR_variant	5'UTR	SNP	C	C	G	rs1250876162		P-0070396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	175	637	0	ENST00000391860.1:c.-27G>C		p.*9*	ENST00000391860	NM_001258311.1																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0070397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	46	265	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647685	3647685	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1160715108		P-0070397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	49	332	0	ENST00000294008.3:c.1378C>T	p.Arg460Cys	p.R460C	ENST00000294008	NM_032444.2	460	Cgc/Tgc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112578	115112579	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0070397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	73	417	0	ENST00000257566.3:c.1161dup	p.Glu388ArgfsTer19	p.E388Rfs*19	ENST00000257566	NM_016569.3	387	-/C																																																																															
CDH1	999	MSKCC	GRCh37	16	68857471	68857482	+	frameshift_variant	Frame_Shift_Ins	INS	AGCAGGATTGCA	AGCAGGATTGCA	GGCAGGAATTTGC			P-0070397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	53	305	2	ENST00000261769.5:c.2106_2117delinsGGCAGGAATTTGC	p.Leu705IlefsTer43	p.L705Ifs*43	ENST00000261769	NM_004360.3	702	gaAGCAGGATTGCAa/gaGGCAGGAATTTGCa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061223	38061228	+	inframe_deletion	In_Frame_Del	DEL	TCTCGA	TCTCGA	-			P-0070399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	223	522	0	ENST00000250448.2:c.761_766del	p.Phe254_Asn256delinsTyr	p.F254_N256delinsY	ENST00000250448	NM_004496.3	254	tTCGAGAac/tac																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0070399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	231	406	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	72	449	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631837	90631837	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519736		P-0070399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	232	590	0	ENST00000330062.3:c.516G>C	p.Arg172Ser	p.R172S	ENST00000330062	NM_002168.2	172	agG/agC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	9	273	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28644742	28644742	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	22	333	0	ENST00000241453.7:c.51T>A	p.Phe17Leu	p.F17L	ENST00000241453	NM_004119.2	17	ttT/ttA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426610	49426610	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070399-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	321	594	0	ENST00000301067.7:c.11878C>T	p.Gln3960Ter	p.Q3960*	ENST00000301067	NM_003482.3	3960	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0070405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	234	656	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0070405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	196	416	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	188	532	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138400852	138400852	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1455285725		P-0070405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	42	426	0	ENST00000289153.2:c.2461C>T	p.Arg821Cys	p.R821C	ENST00000289153	NM_006219.2	821	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0070405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	173	381	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589545	69589545	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1331436166		P-0070405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	189	956	2	ENST00000168712.1:c.308G>A	p.Arg103His	p.R103H	ENST00000168712	NM_002007.2	103	cGc/cAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540150	187540150	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	31	603	0	ENST00000441802.2:c.7590T>A	p.His2530Gln	p.H2530Q	ENST00000441802	NM_005245.3	2530	caT/caA																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022253	31022253	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	711	585	0	ENST00000375687.4:c.1740del	p.Lys580AsnfsTer123	p.K580Nfs*123	ENST00000375687	NM_015338.5	580	Aaa/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911644	114911644	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0070405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	183	472	0	ENST00000543371.1:c.1161+1G>C		p.X387_splice	ENST00000543371	NM_001198531.1	387																																																																																
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			789	150	541	4	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	168	513	1	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			699	192	636	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			840	248	673	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			876	250	638	1	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057936	27057937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1415146710		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			821	188	572	1	ENST00000324856.7:c.1650dup	p.Tyr551LeufsTer72	p.Y551Lfs*72	ENST00000324856	NM_006015.4	548	-/C																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	187	513	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	115	527	2	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	203	427	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222228	5222228	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372067337		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	147	419	0	ENST00000357368.4:c.3107C>T	p.Ser1036Leu	p.S1036L	ENST00000357368	NM_002850.3	1036	tCg/tTg																																																																															
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			751	184	497	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45422959	45422959	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	178	513	0	ENST00000262160.6:c.169C>T	p.Arg57Ter	p.R57*	ENST00000262160	NM_005901.5	57	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781375	3781375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	180	539	0	ENST00000262367.5:c.4990C>T	p.Arg1664Cys	p.R1664C	ENST00000262367	NM_004380.2	1664	Cgc/Tgc																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427568	72427568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs912857100		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	165	502	0	ENST00000477973.2:c.920G>A	p.Asp308Asn	p.D308N	ENST00000477973	NM_012234.5	308	Gac/Aac																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52595840	52595840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			712	211	531	0	ENST00000394830.3:c.4075C>T	p.Arg1359Cys	p.R1359C	ENST00000394830	NM_018313.4	1359	Cgc/Tgc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			706	176	549	2	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																																																															
TAP1	6890	MSKCC	GRCh37	6	32819964	32819964	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs531615408		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			888	62	486	0	ENST00000354258.4:c.946G>A	p.Val316Met	p.V316M	ENST00000354258	NM_000593.5	316	Gtg/Atg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	261	535	13	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041379	47041379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			788	351	686	0	ENST00000329236.7:c.1489G>A	p.Asp497Asn	p.D497N	ENST00000329236	NM_001204466.1	497	Gat/Aat																																																																															
RB1	5925	MSKCC	GRCh37	13	48954347	48954347	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201458896		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	28	368	0	ENST00000267163.4:c.1468G>A	p.Ala490Thr	p.A490T	ENST00000267163	NM_000321.2	490	Gct/Act																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528284	157528284	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs749055122		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			723	215	586	1	ENST00000346085.5:c.6013del	p.Val2005TrpfsTer16	p.V2005Wfs*16	ENST00000346085	NM_020732.3	2003	aaG/aa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914013	32914013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	107	552	0	ENST00000380152.3:c.5521C>T	p.Pro1841Ser	p.P1841S	ENST00000380152		1841	Cca/Tca																																																																															
SETD2	29072	MSKCC	GRCh37	3	47127713	47127713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376246790		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	202	490	0	ENST00000409792.3:c.5369G>A	p.Arg1790Gln	p.R1790Q	ENST00000409792	NM_014159.6	1790	cGg/cAg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090523	5090523	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370705658		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	77	395	0	ENST00000381652.3:c.2839C>T	p.Arg947Trp	p.R947W	ENST00000381652	NM_004972.3	947	Cgg/Tgg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864308	117864308	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1051321465		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	142	434	0	ENST00000297338.2:c.1349G>A	p.Arg450His	p.R450H	ENST00000297338	NM_006265.2	450	cGc/cAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524744	187524744	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375882967		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	213	557	1	ENST00000441802.2:c.10936C>T	p.Arg3646Cys	p.R3646C	ENST00000441802	NM_005245.3	3646	Cgc/Tgc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250768	10250768	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746456488		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	82	507	2	ENST00000340748.4:c.3712C>T	p.Arg1238Cys	p.R1238C	ENST00000340748		1238	Cgc/Tgc																																																																															
AR	367	MSKCC	GRCh37	X	66766279	66766279	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1474848506		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	133	413	0	ENST00000374690.3:c.1291G>A	p.Ala431Thr	p.A431T	ENST00000374690	NM_000044.3	431	Gct/Act																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535395	66535395	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	105	448	0	ENST00000273854.3:c.66del	p.Ile23SerfsTer39	p.I23Sfs*39	ENST00000273854	NM_004439.5	22	ccC/cc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119686	70119686	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	171	481	0	ENST00000245479.2:c.688C>T	p.Gln230Ter	p.Q230*	ENST00000245479	NM_000346.3	230	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	88	301	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39262405	39262405	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	45	508	0	ENST00000402219.2:c.1022G>T	p.Arg341Met	p.R341M	ENST00000402219	NM_005633.3	341	aGg/aTg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503884	47503884	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	170	451	3	ENST00000404338.3:c.4444del	p.Gln1482SerfsTer317	p.Q1482Sfs*317	ENST00000404338	NM_004491.4	1480	aCc/ac																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713724	30713724	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			736	180	641	0	ENST00000359013.4:c.1124T>C	p.Leu375Pro	p.L375P	ENST00000359013	NM_001024847.2	375	cTg/cCg																																																																															
POT1	25913	MSKCC	GRCh37	7	124532410	124532411	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-	rs1462186598		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	142	369	0	ENST00000357628.3:c.33_34del	p.Leu14GlufsTer4	p.L14Efs*4	ENST00000357628	NM_015450.2	11	taTAca/taca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214727	36214728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	175	502	0	ENST00000222270.7:c.3159dup	p.Pro1054AlafsTer34	p.P1054Afs*34	ENST00000222270	NM_014727.1	1051	-/G																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860857	151860857	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	350	466	0	ENST00000262189.6:c.9805C>T	p.Gln3269Ter	p.Q3269*	ENST00000262189	NM_170606.2	3269	Cag/Tag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633450	3633450	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	187	550	0	ENST00000294008.3:c.4801T>C	p.Tyr1601His	p.Y1601H	ENST00000294008	NM_032444.2	1601	Tac/Cac																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867269	45867269	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	183	571	0	ENST00000391945.4:c.924del	p.Val309CysfsTer25	p.V309Cfs*25	ENST00000391945	NM_000400.3	308	ccC/cc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647174	23647174	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			735	58	527	3	ENST00000261584.4:c.693del	p.Gly232ValfsTer6	p.G232Vfs*6	ENST00000261584	NM_024675.3	231	aaA/aa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281601	15281601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	180	457	0	ENST00000263388.2:c.4772G>A	p.Cys1591Tyr	p.C1591Y	ENST00000263388	NM_000435.2	1591	tGc/tAc																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630455	67630455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	51	403	0	ENST00000272342.5:c.641G>T	p.Arg214Met	p.R214M	ENST00000272342	NM_019002.3	214	aGg/aTg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726624	46726624	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1254278018		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			718	193	566	0	ENST00000371975.4:c.703G>A	p.Gly235Arg	p.G235R	ENST00000371975	NM_003579.3	235	Gga/Aga																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871077	12871077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			763	220	539	0	ENST00000228872.4:c.304C>T	p.Pro102Ser	p.P102S	ENST00000228872	NM_004064.3	102	Ccg/Tcg																																																																															
CCND1	595	MSKCC	GRCh37	11	69458678	69458678	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	136	519	0	ENST00000227507.2:c.493C>A	p.Leu165Ile	p.L165I	ENST00000227507	NM_053056.2	165	Ctc/Atc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56400802	56400802	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	107	322	0	ENST00000348428.3:c.1399del	p.Arg467GlufsTer14	p.R467Efs*14	ENST00000348428	NM_006785.3	466	Aaa/aa																																																																															
RAF1	5894	MSKCC	GRCh37	3	12660136	12660136	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			702	176	471	0	ENST00000251849.4:c.85T>G	p.Ser29Ala	p.S29A	ENST00000251849	NM_002880.3	29	Tct/Gct																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902148	50902148	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	177	460	0	ENST00000440232.2:c.44del	p.Pro15GlnfsTer26	p.P15Qfs*26	ENST00000440232	NM_002691.3	14	Ccc/cc																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73775176	73775176	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			893	290	664	0	ENST00000254810.4:c.80G>T	p.Arg27Met	p.R27M	ENST00000254810	NM_005324.3	27	aGg/aTg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984349	201984349	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			708	101	417	0	ENST00000359651.3:c.1014A>C	p.Lys338Asn	p.K338N	ENST00000359651		338	aaA/aaC																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923741	39923741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	346	506	0	ENST00000378444.4:c.3350C>T	p.Ala1117Val	p.A1117V	ENST00000378444	NM_001123385.1	1117	gCa/gTa																																																																															
PGR	5241	MSKCC	GRCh37	11	100999075	100999075	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1343592308		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	136	616	0	ENST00000325455.5:c.727G>A	p.Ala243Thr	p.A243T	ENST00000325455	NM_001202474.3	243	Gct/Act																																																																															
FANCA	2175	MSKCC	GRCh37	16	89816219	89816219	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371351450		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			803	57	554	1	ENST00000389301.3:c.3158G>A	p.Arg1053His	p.R1053H	ENST00000389301	NM_000135.2	1053	cGc/cAc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30128541	30128541	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			785	183	574	0	ENST00000263025.4:c.841C>A	p.Leu281Ile	p.L281I	ENST00000263025	NM_002746.2	281	Cta/Ata																																																																															
MTOR	2475	MSKCC	GRCh37	1	11205057	11205057	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs961978376		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	158	488	0	ENST00000361445.4:c.4732A>G	p.Met1578Val	p.M1578V	ENST00000361445	NM_004958.3	1578	Atg/Gtg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21350316	21350316	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1409419929		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	43	549	0	ENST00000215739.8:c.2134G>T	p.Glu712Ter	p.E712*	ENST00000215739	NM_006767.3	712	Gag/Tag																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59821832	59821832	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	90	426	0	ENST00000259008.2:c.2218C>T	p.Gln740Ter	p.Q740*	ENST00000259008	NM_032043.2	740	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433304	49433304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	175	595	0	ENST00000301067.7:c.8143G>T	p.Gly2715Trp	p.G2715W	ENST00000301067	NM_003482.3	2715	Ggg/Tgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830940	72830940	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376372102		P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	172	647	0	ENST00000268489.5:c.5641G>A	p.Val1881Ile	p.V1881I	ENST00000268489	NM_006885.3	1881	Gtc/Atc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401266	139401266	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			778	51	583	1	ENST00000277541.6:c.3803T>C	p.Val1268Ala	p.V1268A	ENST00000277541	NM_017617.3	1268	gTc/gCc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281872	49281872	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	194	525	0	ENST00000282018.3:c.921del	p.Phe307LeufsTer10	p.F307Lfs*10	ENST00000282018	NM_020377.2	307	Ttt/tt																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699364	117699364	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	172	509	0	ENST00000369458.3:c.277C>T	p.Gln93Ter	p.Q93*	ENST00000369458	NM_024626.3	93	Cag/Tag																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437834	52437834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	192	486	0	ENST00000460680.1:c.1327A>G	p.Asn443Asp	p.N443D	ENST00000460680	NM_004656.3	443	Aac/Gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0070413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			752	201	575	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0070413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	75	435	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
GNA11	2767	MSKCC	GRCh37	19	3121069	3121069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			754	129	634	0	ENST00000078429.4:c.972C>G	p.Ile324Met	p.I324M	ENST00000078429	NM_002067.2	324	atC/atG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0070413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	204	426	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012321	176012321	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1382241525		P-0070413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	95	359	0	ENST00000367669.3:c.1612+1G>A		p.X538_splice	ENST00000367669	NM_022457.5	538																																																																																
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0070421-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			815	144	675	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0070421-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	48	346	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570433	87570433	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0070421-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	64	561	0	ENST00000277120.3:c.2172+1G>A		p.X724_splice	ENST00000277120		724																																																																																
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660548		P-0070423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	353	740	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																															
TP63	8626	MSKCC	GRCh37	3	189612073	189612073	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142762485		P-0070423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			993	25	650	0	ENST00000264731.3:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000264731	NM_003722.4	609	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175288	112175288	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0070423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	329	557	0	ENST00000257430.4:c.3997A>T	p.Lys1333Ter	p.K1333*	ENST00000257430	NM_000038.5	1333	Aaa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711267	114711268	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0070423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	248	500	0	ENST00000543371.1:c.285dup	p.Lys96Ter	p.K96*	ENST00000543371	NM_001198531.1	94	-/T																																																																															
PGR	5241	MSKCC	GRCh37	11	100999653	100999653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	217	623	0	ENST00000325455.5:c.149C>T	p.Ala50Val	p.A50V	ENST00000325455	NM_001202474.3	50	gCc/gTc																																																																															
SDHB	6390	MSKCC	GRCh37	1	17371359	17371359	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777898500		P-0070425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	140	406	0	ENST00000375499.3:c.97G>A	p.Ala33Thr	p.A33T	ENST00000375499	NM_003000.2	33	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	259	462	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0070425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			776	347	616	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696634	47696634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	97	527	0	ENST00000347630.2:c.314C>T	p.Ser105Phe	p.S105F	ENST00000347630	NM_001007230.1	105	tCc/tTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247373	153247373	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	233	450	0	ENST00000281708.4:c.1429G>C	p.Gly477Arg	p.G477R	ENST00000281708	NM_033632.3	477	Ggt/Cgt																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150900284	150900284	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			855	154	565	0	ENST00000271640.5:c.94G>T	p.Glu32Ter	p.E32*	ENST00000271640	NM_001145415.1	32	Gaa/Taa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175951	176175951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	99	538	0	ENST00000367669.3:c.164C>T	p.Ala55Val	p.A55V	ENST00000367669	NM_022457.5	55	gCc/gTc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748474	43748474	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	254	617	0	ENST00000382044.4:c.2332G>C	p.Glu778Gln	p.E778Q	ENST00000382044	NM_001141980.1	778	Gaa/Caa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50828195	50828195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	131	527	0	ENST00000398568.2:c.2533G>T	p.Asp845Tyr	p.D845Y	ENST00000398568	NM_001042412.1	845	Gac/Tac																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627704	37627704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	199	448	0	ENST00000447079.4:c.1619C>T	p.Pro540Leu	p.P540L	ENST00000447079	NM_015083.1	540	cCa/cTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220614	1220614	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	265	615	0	ENST00000326873.7:c.633del	p.Thr212ProfsTer75	p.T212Pfs*75	ENST00000326873	NM_000455.4	211	cGg/cg																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1331458	1331458	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	123	402	0	ENST00000381566.1:c.70G>T	p.Gly24Ter	p.G24*	ENST00000381566		24	Gga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0070426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	201	340	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944812	31944812	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866971809		P-0070426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	359	416	0	ENST00000340398.3:c.289G>A	p.Glu97Lys	p.E97K	ENST00000340398	NM_001013699.2	97	Gaa/Aaa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346365	73346365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	75	364	0	ENST00000377767.4:c.1435G>A	p.Asp479Asn	p.D479N	ENST00000377767	NM_014953.3	479	Gac/Aac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573519	48573519	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	105	535	0	ENST00000342988.3:c.105del	p.Phe35LeufsTer10	p.F35Lfs*10	ENST00000342988	NM_005359.5	35	Ttt/tt																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39318147	39318147	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	22	325	0	ENST00000373001.3:c.655A>T	p.Ser219Cys	p.S219C	ENST00000373001	NM_022157.3	219	Agt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578374	7578405	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTATCTGAGCAGCGCTCATGGTGGGGGCAG	CGCTATCTGAGCAGCGCTCATGGTGGGGGCAG	-			P-0070426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	177	575	0	ENST00000269305.4:c.525_556del	p.Cys176TrpfsTer22	p.C176Wfs*22	ENST00000269305	NM_001126112.2	175	cgCTGCCCCCACCATGAGCGCTGCTCAGATAGCGat/cgat																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375203	31375204	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0070426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			886	175	672	1	ENST00000328111.2:c.600_601delinsTT	p.Met200_Glu201delinsIleTer	p.M200_E201delinsI*	ENST00000328111	NM_006892.3	200	atGGag/atTTag																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1795690	1795690	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			973	181	820	0	ENST00000260795.2:c.29T>G	p.Leu10Arg	p.L10R	ENST00000260795		10	cTc/cGc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962825	2962825	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	144	440	0	ENST00000396946.4:c.2083G>C	p.Val695Leu	p.V695L	ENST00000396946	NM_032415.4	695	Gtc/Ctc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877085	151877085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	164	542	0	ENST00000262189.6:c.7276G>A	p.Glu2426Lys	p.E2426K	ENST00000262189	NM_170606.2	2426	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0070441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	87	201	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs876659675		P-0070441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	137	408	0	ENST00000269305.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTc/aCc																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0070441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	257	439	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89838148	89838148	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376888740		P-0070441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	104	511	0	ENST00000389301.3:c.2089G>A	p.Val697Ile	p.V697I	ENST00000389301	NM_000135.2	697	Gtt/Att																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	102	282	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MDM4	4194	MSKCC	GRCh37	1	204495504	204495504	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181171068		P-0070441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	245	323	0	ENST00000367182.3:c.95C>T	p.Pro32Leu	p.P32L	ENST00000367182	NM_001278516.1	32	cCg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434811	49434811	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371402071		P-0070441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	154	643	0	ENST00000301067.7:c.6742C>T	p.Arg2248Cys	p.R2248C	ENST00000301067	NM_003482.3	2248	Cgc/Tgc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864390	57864390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	49	530	0	ENST00000228682.2:c.1867C>T	p.Arg623Ter	p.R623*	ENST00000228682	NM_005269.2	623	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577157	7577157	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0070444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	103	321	0	ENST00000269305.4:c.783-2A>C		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	68	239	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425011	49425012	+	missense_variant	Missense_Mutation	DNP	TG	TG	AA			P-0070444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	58	469	0	ENST00000301067.7:c.13476_13477delinsTT	p.Ser4493Cys	p.S4493C	ENST00000301067	NM_003482.3	4492	gaCAgc/gaTTgc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18958554	18958554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0070444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	64	257	0	ENST00000262803.5:c.373T>A	p.Tyr125Asn	p.Y125N	ENST00000262803	NM_002911.3	125	Tac/Aac																																																																															
IDH2	3418	MSKCC	GRCh37	15	90634877	90634877	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0070444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	44	419	0	ENST00000330062.3:c.116-1G>C		p.X39_splice	ENST00000330062	NM_002168.2	39																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	73	509	1	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476319	88476319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	43	444	0	ENST00000360948.2:c.1813G>A	p.Gly605Arg	p.G605R	ENST00000360948	NM_001012338.2	605	Gga/Aga																																																																															
ATM	472	MSKCC	GRCh37	11	108200975	108200975	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	77	418	0	ENST00000278616.4:c.7342G>C	p.Asp2448His	p.D2448H	ENST00000278616	NM_000051.3	2448	Gat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	47	313	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620587	52620587	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	36	408	0	ENST00000394830.3:c.3166A>T	p.Ser1056Cys	p.S1056C	ENST00000394830	NM_018313.4	1056	Agc/Tgc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417493	139417493	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	74	540	0	ENST00000277541.6:c.551A>C	p.Gln184Pro	p.Q184P	ENST00000277541	NM_017617.3	184	cAg/cCg																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33689774	33689774	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	57	403	0	ENST00000308377.4:c.1053G>T	p.Met351Ile	p.M351I	ENST00000308377	NM_152270.3	351	atG/atT																																																																															
MED12	9968	MSKCC	GRCh37	X	70347309	70347309	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	49	466	0	ENST00000374080.3:c.2973G>T	p.Glu991Asp	p.E991D	ENST00000374080		991	gaG/gaT																																																																															
INSR	3643	MSKCC	GRCh37	19	7143052	7143052	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	58	466	0	ENST00000302850.5:c.2317G>T	p.Ala773Ser	p.A773S	ENST00000302850	NM_000208.2	773	Gcc/Tcc																																																																															
SMO	6608	MSKCC	GRCh37	7	128845602	128845602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	50	465	0	ENST00000249373.3:c.899C>A	p.Thr300Asn	p.T300N	ENST00000249373	NM_005631.4	300	aCc/aAc																																																																															
CD276	80381	MSKCC	GRCh37	15	73996010	73996010	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	83	485	0	ENST00000318443.5:c.744G>T	p.Glu248Asp	p.E248D	ENST00000318443	NM_001024736.1	248	gaG/gaT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288893	212288893	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070446-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	63	405	0	ENST00000342788.4:c.2853G>C	p.Met951Ile	p.M951I	ENST00000342788	NM_005235.2	951	atG/atC																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989592	212989592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	73	204	0	ENST00000342788.4:c.119C>T	p.Ser40Phe	p.S40F	ENST00000342788	NM_005235.2	40	tCt/tTt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11181344	11181344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	38	214	0	ENST00000361445.4:c.6892G>C	p.Asp2298His	p.D2298H	ENST00000361445	NM_004958.3	2298	Gac/Cac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112328	115112328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1438073122		P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	27	329	0	ENST00000257566.3:c.1412G>A	p.Arg471His	p.R471H	ENST00000257566	NM_016569.3	471	cGc/cAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110000	115110000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs954634731		P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	32	275	0	ENST00000257566.3:c.1878C>A	p.His626Gln	p.H626Q	ENST00000257566	NM_016569.3	626	caC/caA																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665035	138665035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	75	246	0	ENST00000330315.3:c.530G>T	p.Gly177Val	p.G177V	ENST00000330315	NM_023067.3	177	gGc/gTc																																																																															
EED	8726	MSKCC	GRCh37	11	85975286	85975286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	126	204	0	ENST00000263360.6:c.707G>T	p.Arg236Ile	p.R236I	ENST00000263360	NM_003797.3	236	aGa/aTa																																																																															
IRF4	3662	MSKCC	GRCh37	6	401581	401581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	34	285	0	ENST00000380956.4:c.903G>T	p.Arg301Ser	p.R301S	ENST00000380956	NM_001195286.1	301	agG/agT																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59878822	59878822	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587782731		P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	41	197	0	ENST00000259008.2:c.932A>G	p.Tyr311Cys	p.Y311C	ENST00000259008	NM_032043.2	311	tAt/tGt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120088	70120088	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs200658115		P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	69	316	0	ENST00000245479.2:c.1090G>C	p.Ala364Pro	p.A364P	ENST00000245479	NM_000346.3	364	Gcg/Ccg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573753	64573753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	83	340	1	ENST00000337652.1:c.1015G>A	p.Val339Met	p.V339M	ENST00000337652	NM_130803.2	339	Gtg/Atg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40459437	40459437	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	55	254	0	ENST00000345506.4:c.1698G>T	p.Trp566Cys	p.W566C	ENST00000345506	NM_003152.3	566	tgG/tgT																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29090080	29090080	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	13	47	0	ENST00000328354.6:c.1401G>T	p.Leu467Phe	p.L467F	ENST00000328354	NM_007194.3	467	ttG/ttT																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241867	72241867	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1231006548		P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	57	210	0	ENST00000357731.5:c.523A>G	p.Ile175Val	p.I175V	ENST00000357731	NM_173808.2	175	Atc/Gtc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243862	46243862	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	53	239	1	ENST00000334344.6:c.1956G>C	p.Arg652Ser	p.R652S	ENST00000334344	NM_152641.2	652	agG/agC																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55154995	55154995	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	80	281	0	ENST00000257290.5:c.2704G>T	p.Asp902Tyr	p.D902Y	ENST00000257290	NM_006206.4	902	Gat/Tat																																																																															
TET1	80312	MSKCC	GRCh37	10	70405103	70405103	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs199844508		P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	38	301	0	ENST00000373644.4:c.2617G>T	p.Val873Phe	p.V873F	ENST00000373644	NM_030625.2	873	Gtt/Ttt																																																																															
ALK	238	MSKCC	GRCh37	2	29443693	29443693	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	63	243	0	ENST00000389048.3:c.3524A>T	p.Asn1175Ile	p.N1175I	ENST00000389048	NM_004304.4	1175	aAc/aTc																																																																															
SYK	6850	MSKCC	GRCh37	9	93626906	93626906	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	52	169	0	ENST00000375746.1:c.753G>T	p.Leu251Phe	p.L251F	ENST00000375746	NM_001174167.1	251	ttG/ttT																																																																															
TOP1	7150	MSKCC	GRCh37	20	39744971	39744971	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	54	203	0	ENST00000361337.2:c.1761G>T	p.Lys587Asn	p.K587N	ENST00000361337	NM_003286.2	587	aaG/aaT																																																																															
ALK	238	MSKCC	GRCh37	2	29754835	29754835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	83	264	0	ENST00000389048.3:c.1100C>A	p.Pro367His	p.P367H	ENST00000389048	NM_004304.4	367	cCc/cAc																																																																															
RARA	5914	MSKCC	GRCh37	17	38510627	38510627	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	63	293	2	ENST00000254066.5:c.881G>T	p.Arg294Leu	p.R294L	ENST00000254066	NM_000964.3	294	cGg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432372	49432372	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs988820724		P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	65	322	0	ENST00000301067.7:c.8767G>T	p.Gly2923Cys	p.G2923C	ENST00000301067	NM_003482.3	2923	Ggc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42003475	42003475	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	45	259	0	ENST00000219905.7:c.3012G>A	p.Trp1004Ter	p.W1004*	ENST00000219905	NM_001164273.1	1004	tgG/tgA																																																																															
KDR	3791	MSKCC	GRCh37	4	55972914	55972914	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	53	208	0	ENST00000263923.4:c.1476G>T	p.Gln492His	p.Q492H	ENST00000263923	NM_002253.2	492	caG/caT																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119631551	119631551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	67	156	0	ENST00000316626.5:c.715G>T	p.Asp239Tyr	p.D239Y	ENST00000316626		239	Gat/Tat																																																																															
SDHA	6389	MSKCC	GRCh37	5	233717	233717	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	163	151	0	ENST00000264932.6:c.1021G>T	p.Asp341Tyr	p.D341Y	ENST00000264932	NM_004168.2	341	Gat/Tat																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570374	87570374	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	129	328	0	ENST00000277120.3:c.2114T>A	p.Leu705Gln	p.L705Q	ENST00000277120		705	cTg/cAg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664873	138664873	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	24	187	0	ENST00000330315.3:c.692C>A	p.Ala231Asp	p.A231D	ENST00000330315	NM_023067.3	231	gCt/gAt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462915	120462915	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	65	236	0	ENST00000256646.2:c.5416G>C	p.Ala1806Pro	p.A1806P	ENST00000256646	NM_024408.3	1806	Gct/Cct																																																																															
ATR	545	MSKCC	GRCh37	3	142186894	142186894	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs751887452		P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	58	231	0	ENST00000350721.4:c.6569G>T	p.Arg2190Leu	p.R2190L	ENST00000350721	NM_001184.3	2190	cGt/cTt																																																																															
HGF	3082	MSKCC	GRCh37	7	81336663	81336663	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	37	177	0	ENST00000222390.5:c.1559G>T	p.Gly520Val	p.G520V	ENST00000222390	NM_000601.4	520	gGa/gTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542390	187542390	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	66	307	0	ENST00000441802.2:c.5350del	p.Val1784SerfsTer2	p.V1784Sfs*2	ENST00000441802	NM_005245.3	1784	Gtc/tc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747940	41747940	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1469920302		P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	52	196	0	ENST00000226382.2:c.829C>A	p.Pro277Thr	p.P277T	ENST00000226382	NM_003924.3	277	Ccc/Acc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272204	15272204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	39	327	0	ENST00000263388.2:c.6235G>T	p.Gly2079Trp	p.G2079W	ENST00000263388	NM_000435.2	2079	Ggg/Tgg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412697	63412697	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	42	130	0	ENST00000330258.3:c.470A>T	p.Glu157Val	p.E157V	ENST00000330258	NM_152424.3	157	gAg/gTg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198288690	198288690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	49	214	0	ENST00000335508.6:c.37G>T	p.Ala13Ser	p.A13S	ENST00000335508	NM_012433.2	13	Gca/Tca																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211763	2211763	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	31	287	0	ENST00000398665.3:c.1479C>G	p.Ile493Met	p.I493M	ENST00000398665	NM_032482.2	493	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0070453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	261	583	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0070453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	89	354	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120132	70120133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0070453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	301	553	0	ENST00000245479.2:c.1137_1138dup	p.His380ArgfsTer4	p.H380Rfs*4	ENST00000245479	NM_000346.3	378	-/GC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0070453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	117	299	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175735	112175750	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCCAGATGCTGATA	CTTCCAGATGCTGATA	-			P-0070453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	192	518	0	ENST00000257430.4:c.4447_4462del	p.Pro1483TyrfsTer19	p.P1483Yfs*19	ENST00000257430	NM_000038.5	1482	CTTCCAGATGCTGATAct/ct																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945093	31945093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	236	476	0	ENST00000340398.3:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000340398	NM_001013699.2	3	cGa/cAa																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84391470	84391470	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	72	160	0	ENST00000321945.7:c.362T>G	p.Leu121Trp	p.L121W	ENST00000321945	NM_139076.2	121	tTg/tGg																																																																															
APC	324	MSKCC	GRCh37	5	112174365	112174366	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0070453-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	141	442	0	ENST00000257430.4:c.3077dup	p.Asn1026LysfsTer3	p.N1026Kfs*3	ENST00000257430	NM_000038.5	1025	ata/atAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0070475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	97	435	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	83	449	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
ATR	545	MSKCC	GRCh37	3	142238534	142238534	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	72	407	0	ENST00000350721.4:c.4359A>G	p.Ile1453Met	p.I1453M	ENST00000350721	NM_001184.3	1453	atA/atG																																																																															
CBFB	865	MSKCC	GRCh37	16	67070585	67070607	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCCAGCTGGCAGGGAGAACAG	CGGCCAGCTGGCAGGGAGAACAG	-			P-0070475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	93	492	0	ENST00000412916.2:c.211_233del	p.Ala71ThrfsTer4	p.A71Tfs*4	ENST00000412916		70	cCGGCCAGCTGGCAGGGAGAACAG/c																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422083	81422083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	44	522	0	ENST00000298171.2:c.59G>A	p.Gly20Asp	p.G20D	ENST00000298171	NM_000369.2	20	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	37	332	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0070492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	84	471	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0070492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	69	389	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0070495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	294	505	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0070495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	235	430	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	128	377	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
USP8	9101	MSKCC	GRCh37	15	50788236	50788236	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1241125001		P-0070495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	64	348	0	ENST00000307179.4:c.2850G>A	p.Met950Ile	p.M950I	ENST00000307179		950	atG/atA																																																																															
PREX2	80243	MSKCC	GRCh37	8	69011962	69011962	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	25	367	0	ENST00000288368.4:c.2599T>A	p.Cys867Ser	p.C867S	ENST00000288368	NM_024870.2	867	Tgt/Agt																																																																															
GAB1	2549	MSKCC	GRCh37	4	144387275	144387275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	64	365	0	ENST00000262994.4:c.1823G>A	p.Ser608Asn	p.S608N	ENST00000262994	NM_002039.3	608	aGt/aAt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2135262	2135262	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070495-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	29	495	0	ENST00000219476.3:c.4601T>G	p.Leu1534Arg	p.L1534R	ENST00000219476	NM_000548.3	1534	cTc/cGc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99181121	99181121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749167994		P-0070496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			859	174	536	0	ENST00000074304.5:c.2062G>A	p.Gly688Ser	p.G688S	ENST00000074304	NM_001134224.1	688	Ggc/Agc																																																																															
CDH1	999	MSKCC	GRCh37	16	68842595	68842595	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0070496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	199	499	0	ENST00000261769.5:c.532-1G>T		p.X178_splice	ENST00000261769	NM_004360.3	178																																																																																
GATA3	2625	MSKCC	GRCh37	10	8115969	8115970	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCACC			P-0070496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	220	550	0	ENST00000346208.3:c.1316_1320dup	p.Ala441SerfsTer36	p.A441Sfs*36	ENST00000346208		439	gtc/gTCACCtc																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	66	704	3	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	44	160	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			702	114	733	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	61	391	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777792	3777792	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200566758		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			737	81	735	0	ENST00000262367.5:c.7256C>T	p.Ala2419Val	p.A2419V	ENST00000262367	NM_004380.2	2419	gCg/gTg																																																																															
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	73	470	0	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517201		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	31	270	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573505	48573506	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	77	618	0	ENST00000342988.3:c.94_95del	p.Ser32Ter	p.S32*	ENST00000342988	NM_005359.5	30	gGA/g																																																																															
APC	324	MSKCC	GRCh37	5	112155042	112155042	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs863225310		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	51	458	0	ENST00000257430.4:c.1312+1G>A		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212483913	212483913	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	55	498	0	ENST00000342788.4:c.2290G>T	p.Glu764Ter	p.E764*	ENST00000342788	NM_005235.2	764	Gag/Tag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	125	784	1	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290180	15290180	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371437217		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			796	126	912	0	ENST00000263388.2:c.3455C>T	p.Thr1152Met	p.T1152M	ENST00000263388	NM_000435.2	1152	aCg/aTg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033421	48033421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs63750119		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	76	564	0	ENST00000234420.5:c.3725G>A	p.Arg1242His	p.R1242H	ENST00000234420	NM_000179.2	1242	cGt/cAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907526	32907526	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	69	485	0	ENST00000380152.3:c.1909+2T>C		p.X637_splice	ENST00000380152		637																																																																																
ESR1	2099	MSKCC	GRCh37	6	152129338	152129338	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1361952517		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	58	713	1	ENST00000206249.3:c.296del	p.Pro99HisfsTer10	p.P99Hfs*10	ENST00000206249	NM_000125.3	97	ttC/tt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264066389		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	57	527	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907421	32907421	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs80359307		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	81	536	3	ENST00000380152.3:c.1813del	p.Ile605TyrfsTer9	p.I605Yfs*9	ENST00000380152		602	ggA/gg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391799	139391799	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1455334351		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	100	728	3	ENST00000277541.6:c.6392del	p.Gly2131AlafsTer117	p.G2131Afs*117	ENST00000277541	NM_017617.3	2131	gGc/gc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806180	1806181	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775260779		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	78	767	2	ENST00000260795.2:c.1206dup	p.Lys403GlnfsTer93	p.K403Qfs*93	ENST00000260795		400	agc/agCc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402543	139402543	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200871631		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	93	728	0	ENST00000277541.6:c.3374C>T	p.Ala1125Val	p.A1125V	ENST00000277541	NM_017617.3	1125	gCg/gTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	81	608	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
KIT	3815	MSKCC	GRCh37	4	55564618	55564618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	63	565	0	ENST00000288135.5:c.506G>A	p.Gly169Asp	p.G169D	ENST00000288135	NM_000222.2	169	gGc/gAc																																																																															
NF2	4771	MSKCC	GRCh37	22	30070875	30070875	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776109136		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	75	518	0	ENST00000338641.4:c.1391C>T	p.Ala464Val	p.A464V	ENST00000338641	NM_000268.3	464	gCg/gTg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384628	31384628	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201465442		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	66	708	0	ENST00000328111.2:c.1330G>A	p.Val444Met	p.V444M	ENST00000328111	NM_006892.3	444	Gtg/Atg																																																																															
BLM	641	MSKCC	GRCh37	15	91328208	91328208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367953471		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	77	519	0	ENST00000355112.3:c.2720C>T	p.Thr907Met	p.T907M	ENST00000355112	NM_000057.2	907	aCg/aTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925621	114925621	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763934346		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	56	600	0	ENST00000543371.1:c.1699G>A	p.Ala567Thr	p.A567T	ENST00000543371	NM_001198531.1	567	Gcc/Acc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170159	32170159	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs559963136		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	59	778	0	ENST00000375023.3:c.3449C>T	p.Thr1150Met	p.T1150M	ENST00000375023	NM_004557.3	1150	aCg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874713	151874713	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	90	711	0	ENST00000262189.6:c.7825C>T	p.Arg2609Ter	p.R2609*	ENST00000262189	NM_170606.2	2609	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218425	36218425	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	88	685	0	ENST00000222270.7:c.4204C>T	p.Arg1402Ter	p.R1402*	ENST00000222270	NM_014727.1	1402	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821875	72821875	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	71	643	2	ENST00000268489.5:c.10300del	p.Leu3434SerfsTer51	p.L3434Sfs*51	ENST00000268489	NM_006885.3	3434	Ctc/tc																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439919	51439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	62	558	0	ENST00000262662.1:c.488del	p.Gly163GlufsTer24	p.G163Efs*24	ENST00000262662		162	Ggg/gg																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281758	49281758	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777488065		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	63	667	0	ENST00000282018.3:c.805G>A	p.Val269Ile	p.V269I	ENST00000282018	NM_020377.2	269	Gtc/Atc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68993058	68993058	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	48	381	0	ENST00000288368.4:c.1865del	p.Gly622AspfsTer22	p.G622Dfs*22	ENST00000288368	NM_024870.2	621	aaG/aa																																																																															
CASP8	841	MSKCC	GRCh37	2	202151253	202151254	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	71	549	0	ENST00000358485.4:c.1557dup	p.Lys520GlufsTer19	p.K520Efs*19	ENST00000358485	NM_001080125.1	518	atg/atGg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224219	36224219	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	45	400	0	ENST00000222270.7:c.6773del	p.Pro2258LeufsTer3	p.P2258Lfs*3	ENST00000222270	NM_014727.1	2257	Ccc/cc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602860	10602860	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1402273110		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	78	650	0	ENST00000171111.5:c.718C>T	p.Arg240Cys	p.R240C	ENST00000171111	NM_203500.1	240	Cgc/Tgc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503744	47503746	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs1387779417		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	86	711	0	ENST00000404338.3:c.4307_4309del	p.Phe1436del	p.F1436del	ENST00000404338	NM_004491.4	1433	ccCTTc/ccc																																																																															
SCG5	6447	MSKCC	GRCh37	15	32935881	32935881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs532967380		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	86	567	0	ENST00000300175.4:c.88C>T	p.Arg30Trp	p.R30W	ENST00000300175	NM_001144757.1	30	Cgg/Tgg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	153	603	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150916470	150916470	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	50	497	0	ENST00000271640.5:c.949+1G>A		p.X317_splice	ENST00000271640	NM_001145415.1	317																																																																																
RAF1	5894	MSKCC	GRCh37	3	12641300	12641300	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755384884		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	86	451	0	ENST00000251849.4:c.998G>A	p.Arg333His	p.R333H	ENST00000251849	NM_002880.3	333	cGt/cAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396899	139396899	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	71	454	0	ENST00000277541.6:c.5209A>G	p.Met1737Val	p.M1737V	ENST00000277541	NM_017617.3	1737	Atg/Gtg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827891	72827891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs190876187		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	85	682	0	ENST00000268489.5:c.8690C>T	p.Pro2897Leu	p.P2897L	ENST00000268489	NM_006885.3	2897	cCg/cTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562536	95562536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	107	688	0	ENST00000343455.3:c.4721G>A	p.Cys1574Tyr	p.C1574Y	ENST00000343455	NM_177438.2	1574	tGt/tAt																																																																															
STK11	6794	MSKCC	GRCh37	19	1226513	1226513	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	85	689	0	ENST00000326873.7:c.1169T>C	p.Val390Ala	p.V390A	ENST00000326873	NM_000455.4	390	gTg/gCg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	442756	442756	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	87	604	0	ENST00000399788.2:c.1550T>C	p.Val517Ala	p.V517A	ENST00000399788	NM_001042603.1	517	gTg/gCg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646993	23646993	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	74	593	0	ENST00000261584.4:c.874C>T	p.Gln292Ter	p.Q292*	ENST00000261584	NM_024675.3	292	Caa/Taa																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50483715	50483715	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	64	417	1	ENST00000394963.4:c.820C>T	p.Arg274Trp	p.R274W	ENST00000394963	NM_003076.4	274	Cgg/Tgg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178113	56178113	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	80	624	0	ENST00000399503.3:c.3086T>C	p.Phe1029Ser	p.F1029S	ENST00000399503	NM_005921.1	1029	tTc/tCc																																																																															
CD274	29126	MSKCC	GRCh37	9	5463069	5463069	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	72	582	0	ENST00000381577.3:c.633del	p.Phe211LeufsTer4	p.F211Lfs*4	ENST00000381577	NM_014143.3	210	acT/ac																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865365	57865365	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			759	97	716	0	ENST00000228682.2:c.2842T>C	p.Tyr948His	p.Y948H	ENST00000228682	NM_005269.2	948	Tat/Cat																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21344724	21344724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	87	568	0	ENST00000215739.8:c.701C>T	p.Ala234Val	p.A234V	ENST00000215739	NM_006767.3	234	gCt/gTt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413234	139413234	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	89	608	0	ENST00000277541.6:c.908C>A	p.Pro303Gln	p.P303Q	ENST00000277541	NM_017617.3	303	cCa/cAa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64571826	64571826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	77	560	0	ENST00000337652.1:c.1828C>T	p.Arg610Trp	p.R610W	ENST00000337652	NM_130803.2	610	Cgg/Tgg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350582	15350582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	57	573	0	ENST00000263377.2:c.3333G>T	p.Lys1111Asn	p.K1111N	ENST00000263377	NM_058243.2	1111	aaG/aaT																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462858	120462858	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	56	596	0	ENST00000256646.2:c.5473G>T	p.Gly1825Cys	p.G1825C	ENST00000256646	NM_024408.3	1825	Ggc/Tgc																																																																															
CD274	29126	MSKCC	GRCh37	9	5457213	5457213	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	83	549	0	ENST00000381577.3:c.187A>C	p.Asn63His	p.N63H	ENST00000381577	NM_014143.3	63	Aac/Cac																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520332	176520332	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	63	520	0	ENST00000292408.4:c.1251G>T	p.Gln417His	p.Q417H	ENST00000292408	NM_213647.1	417	caG/caT																																																																															
MSH2	4436	MSKCC	GRCh37	2	47690221	47690221	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	59	484	0	ENST00000233146.2:c.1438G>T	p.Glu480Ter	p.E480*	ENST00000233146	NM_000251.2	480	Gaa/Taa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022466	12022466	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201820837		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			767	131	834	0	ENST00000396373.4:c.572G>A	p.Arg191Gln	p.R191Q	ENST00000396373	NM_001987.4	191	cGg/cAg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562991	21562991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	80	817	0	ENST00000382592.4:c.928G>T	p.Gly310Trp	p.G310W	ENST00000382592	NM_014572.2	310	Ggg/Tgg																																																																															
E2F3	1871	MSKCC	GRCh37	6	20483016	20483016	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	86	533	0	ENST00000346618.3:c.749G>T	p.Gly250Val	p.G250V	ENST00000346618	NM_001949.4	250	gGg/gTg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31410960	31410960	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	79	554	0	ENST00000344624.3:c.3560A>G	p.Gln1187Arg	p.Q1187R	ENST00000344624		1187	cAg/cGg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324898	31324898	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	51	601	0	ENST00000412585.2:c.38T>G	p.Leu13Arg	p.L13R	ENST00000412585	NM_005514.6	13	cTc/cGc																																																																															
GAB1	2549	MSKCC	GRCh37	4	144361374	144361374	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	97	631	0	ENST00000262994.4:c.1424T>C	p.Met475Thr	p.M475T	ENST00000262994	NM_002039.3	475	aTg/aCg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417371	139417371	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			769	86	815	0	ENST00000277541.6:c.673T>C	p.Ser225Pro	p.S225P	ENST00000277541	NM_017617.3	225	Tcg/Ccg																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045730	26045730	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1422878610		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			858	72	822	0	ENST00000540144.1:c.92C>T	p.Pro31Leu	p.P31L	ENST00000540144	NM_003531.2	31	cCg/cTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41513769	41513769	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	104	536	0	ENST00000263253.7:c.673C>T	p.Gln225Ter	p.Q225*	ENST00000263253	NM_001429.3	225	Cag/Tag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2969687	2969687	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	77	626	0	ENST00000396946.4:c.1592G>C	p.Gly531Ala	p.G531A	ENST00000396946	NM_032415.4	531	gGc/gCc																																																																															
ATRX	546	MSKCC	GRCh37	X	76939651	76939651	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	93	299	0	ENST00000373344.5:c.1097T>C	p.Met366Thr	p.M366T	ENST00000373344	NM_000489.3	366	aTg/aCg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117875431	117875431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	60	516	0	ENST00000297338.2:c.212C>T	p.Ala71Val	p.A71V	ENST00000297338	NM_006265.2	71	gCc/gTc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2039768	2039776	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAA	CAGCAGCAA	-			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			774	46	827	0	ENST00000349721.2:c.666_674del	p.Gln236_Gln238del	p.Q236_Q238del	ENST00000349721	NM_003070.3	220	CAGCAGCAA/-																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2227087	2227087	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs761253133		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	82	674	0	ENST00000398665.3:c.4567A>G	p.Met1523Val	p.M1523V	ENST00000398665	NM_032482.2	1523	Atg/Gtg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48023075	48023075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	75	487	1	ENST00000234420.5:c.500G>A	p.Ser167Asn	p.S167N	ENST00000234420	NM_000179.2	167	aGt/aAt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248034	110248034	+	frameshift_variant,stop_lost	Frame_Shift_Del	DEL	A	A	-			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	53	495	1	ENST00000374672.4:c.1438del	p.Ter480LysfsTer44	p.*480Kfs*44	ENST00000374672	NM_004235.4	480	Taa/aa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71037204	71037204	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	84	561	0	ENST00000318789.4:c.1087C>T	p.Gln363Ter	p.Q363*	ENST00000318789	NM_032682.5	363	Caa/Taa																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52725493	52725493	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	80	628	0	ENST00000322088.6:c.1660A>C	p.Ser554Arg	p.S554R	ENST00000322088	NM_014225.5	554	Agc/Cgc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131940629	131940629	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	51	429	0	ENST00000265335.6:c.2656C>T	p.Gln886Ter	p.Q886*	ENST00000265335		886	Caa/Taa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43762174	43762174	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	70	512	0	ENST00000382044.4:c.1271del	p.Asn424ThrfsTer67	p.N424Tfs*67	ENST00000382044	NM_001141980.1	424	aAc/ac																																																																															
ALB	213	MSKCC	GRCh37	4	74277838	74277838	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	70	440	0	ENST00000295897.4:c.839A>G	p.Asp280Gly	p.D280G	ENST00000295897	NM_000477.5	280	gAc/gGc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351583	89351583	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	126	733	0	ENST00000301030.4:c.1367A>C	p.Lys456Thr	p.K456T	ENST00000301030	NM_001256183.1	456	aAg/aCg																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288365	21288365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	102	671	0	ENST00000354336.3:c.610G>A	p.Ala204Thr	p.A204T	ENST00000354336	NM_005207.3	204	Gct/Act																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561061	9561061	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	73	642	0	ENST00000353224.5:c.721G>T	p.Gly241Trp	p.G241W	ENST00000353224	NM_177990.2	241	Ggg/Tgg																																																																															
TET2	54790	MSKCC	GRCh37	4	106197561	106197561	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	70	574	0	ENST00000380013.4:c.5894T>C	p.Leu1965Pro	p.L1965P	ENST00000380013	NM_001127208.2	1965	cTg/cCg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679666	30679666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			760	104	691	0	ENST00000376406.3:c.2053G>A	p.Glu685Lys	p.E685K	ENST00000376406	NM_014641.2	685	Gaa/Aaa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638983	176638983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	104	672	0	ENST00000439151.2:c.3583C>A	p.Pro1195Thr	p.P1195T	ENST00000439151	NM_022455.4	1195	Cct/Act																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11094973	11094973	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	85	772	0	ENST00000344626.4:c.146C>A	p.Pro49Gln	p.P49Q	ENST00000344626	NM_003072.3	49	cCg/cAg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29913026	29913026	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			706	92	547	0	ENST00000376809.5:c.1061A>G	p.Gln354Arg	p.Q354R	ENST00000376809	NM_002116.7	354	cAg/cGg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113122	209113122	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	87	592	0	ENST00000345146.2:c.385A>G	p.Ile129Val	p.I129V	ENST00000345146	NM_005896.2	129	Atc/Gtc																																																																															
BRAF	673	MSKCC	GRCh37	7	140501254	140501254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	51	399	0	ENST00000288602.6:c.818G>A	p.Ser273Asn	p.S273N	ENST00000288602	NM_004333.4	273	aGt/aAt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737828	145737828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs918047641		P-0070498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			773	107	810	0	ENST00000428558.2:c.3002C>T	p.Ala1001Val	p.A1001V	ENST00000428558	NM_004260.3	1001	gCc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0070501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	76	265	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577111	7577112	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0070501-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	59	515	0	ENST00000269305.4:c.826_827delinsTT	p.Ala276Phe	p.A276F	ENST00000269305	NM_001126112.2	276	GCc/TTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0070503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	228	358	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121912580		P-0070503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			62	211	277	0	ENST00000342988.3:c.1157G>T	p.Gly386Val	p.G386V	ENST00000342988	NM_005359.5	386	gGt/gTt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984021	2984021	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766268425		P-0070503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	601	362	2	ENST00000396946.4:c.509G>A	p.Arg170His	p.R170H	ENST00000396946	NM_032415.4	170	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	291	246	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29005448	29005448	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0070503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	96	238	0	ENST00000282397.4:c.814-1G>A		p.X272_splice	ENST00000282397	NM_002019.4	272																																																																																
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0070511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	9	460	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1206165503		P-0070511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	122	497	0	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404598	8404598	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	46	297	1	ENST00000356435.5:c.4149G>T	p.Lys1383Asn	p.K1383N	ENST00000356435		1383	aaG/aaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0070511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	114	248	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523311	9523311	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	80	399	0	ENST00000353224.5:c.1926del	p.Tyr643ThrfsTer21	p.Y643Tfs*21	ENST00000353224	NM_177990.2	642	ccC/cc																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61305123	61305123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	45	514	0	ENST00000341074.5:c.1003G>A	p.Glu335Lys	p.E335K	ENST00000341074	NM_002974.2	335	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295925	1295925	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0070511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	231	682	0				ENST00000310581	NM_198253.2																																																																																	
RFWD2	64326	MSKCC	GRCh37	1	176145133	176145133	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	36	255	0	ENST00000367669.3:c.478A>C	p.Ile160Leu	p.I160L	ENST00000367669	NM_022457.5	160	Att/Ctt																																																																															
MGA	23269	MSKCC	GRCh37	15	42052608	42052609	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0070511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	240	386	0	ENST00000219905.7:c.7285_7286del	p.Thr2429CysfsTer3	p.T2429Cfs*3	ENST00000219905	NM_001164273.1	2427	ACa/a																																																																															
MSI1	4440	MSKCC	GRCh37	12	120806882	120806882	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	61	384	0	ENST00000257552.2:c.13G>T	p.Ala5Ser	p.A5S	ENST00000257552	NM_002442.3	5	Gcg/Tcg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139820352	139820352	+	stop_lost	Nonstop_Mutation	SNP	A	A	T			P-0070511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	174	336	0	ENST00000247668.2:c.1505A>T	p.Ter502LeuextTer121	p.*502Lext*121	ENST00000247668	NM_021138.3	502	tAa/tTa																																																																															
MGA	23269	MSKCC	GRCh37	15	42052559	42052559	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	164	357	0	ENST00000219905.7:c.7230G>A	p.Trp2410Ter	p.W2410*	ENST00000219905	NM_001164273.1	2410	tgG/tgA																																																																															
PARK2	5071	MSKCC	GRCh37	6	162475202	162475202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	79	319	0	ENST00000366898.1:c.539C>T	p.Pro180Leu	p.P180L	ENST00000366898	NM_004562.2	180	cCa/cTa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039888	47039889	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	T			P-0070511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			71	151	168	0	ENST00000329236.7:c.997_998delinsT	p.Gln333CysfsTer74	p.Q333Cfs*74	ENST00000329236	NM_001204466.1	333	CAg/Tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0070517-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	159	59	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214884	36214884	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1403628021		P-0070517-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	241	69	0	ENST00000222270.7:c.3310C>T	p.Arg1104Trp	p.R1104W	ENST00000222270	NM_014727.1	1104	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0070517-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	141	50	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971125	21971125	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070517-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	161	71	0	ENST00000304494.5:c.233T>C	p.Leu78Pro	p.L78P	ENST00000304494	NM_000077.4	78	cTc/cCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0070518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	269	745	10	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931589		P-0070518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			760	227	517	8	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25964903	25964903	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs561088610		P-0070518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	258	550	4	ENST00000435504.4:c.4303C>T	p.Arg1435Trp	p.R1435W	ENST00000435504		1435	Cgg/Tgg																																																																															
INHA	3623	MSKCC	GRCh37	2	220439887	220439887	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751673614		P-0070518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			908	335	662	1	ENST00000243786.2:c.740G>A	p.Arg247His	p.R247H	ENST00000243786	NM_002191.3	247	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0070541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			307	146	411	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0070541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			204	162	208	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115740	8115740	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	119	329	0	ENST00000346208.3:c.1086G>T	p.Gln362His	p.Q362H	ENST00000346208		362	caG/caT																																																																															
RAD50	10111	MSKCC	GRCh37	5	131930661	131930661	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1220796191		P-0070541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			311	79	242	0	ENST00000265335.6:c.1894G>A	p.Val632Ile	p.V632I	ENST00000265335		632	Gtt/Att																																																																															
SDHA	6389	MSKCC	GRCh37	5	233634	233634	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			80	52	88	0	ENST00000264932.6:c.938G>T	p.Gly313Val	p.G313V	ENST00000264932	NM_004168.2	313	gGa/gTa																																																																															
SRC	6714	MSKCC	GRCh37	20	36024646	36024646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	254	366	0	ENST00000358208.4:c.635G>A	p.Ser212Asn	p.S212N	ENST00000358208		212	aGc/aAc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57857545	57857545	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			324	249	317	0	ENST00000228682.2:c.71G>T	p.Ser24Ile	p.S24I	ENST00000228682	NM_005269.2	24	aGt/aTt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502663	149502663	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			408	131	392	0	ENST00000261799.4:c.2125C>A	p.Arg709Ser	p.R709S	ENST00000261799	NM_002609.3	709	Cgc/Agc																																																																															
BARD1	580	MSKCC	GRCh37	2	215610479	215610479	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0070541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			266	107	291	0	ENST00000260947.4:c.1777A>T	p.Lys593Ter	p.K593*	ENST00000260947	NM_000465.2	593	Aag/Tag																																																																															
CCND3	896	MSKCC	GRCh37	6	41908148	41908148	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			361	51	284	0	ENST00000372991.4:c.374G>T	p.Cys125Phe	p.C125F	ENST00000372991	NM_001760.3	125	tGc/tTc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117868944	117868944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			423	209	210	0	ENST00000297338.2:c.755G>T	p.Gly252Val	p.G252V	ENST00000297338	NM_006265.2	252	gGg/gTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690819	89690820	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0070562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	160	225	0	ENST00000371953.3:c.227_228del	p.Tyr76Ter	p.Y76*	ENST00000371953	NM_000314.4	76	TAt/t																																																																															
TP53	7157	MSKCC	GRCh37	17	7576883	7576883	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	315	511	0	ENST00000269305.4:c.963del	p.Lys321AsnfsTer24	p.K321Nfs*24	ENST00000269305	NM_001126112.2	321	aaA/aa																																																																															
MGA	23269	MSKCC	GRCh37	15	42042185	42042185	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0070562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	121	447	0	ENST00000219905.7:c.6380C>G	p.Ser2127Ter	p.S2127*	ENST00000219905	NM_001164273.1	2127	tCa/tGa																																																																															
AKT1	207	MSKCC	GRCh37	14	105241486	105241486	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	124	484	0	ENST00000349310.3:c.494T>G	p.Ile165Ser	p.I165S	ENST00000349310	NM_001014432.1	165	aTc/aGc																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108320	8108320	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	106	448	0	ENST00000585124.1:c.904G>C	p.Asp302His	p.D302H	ENST00000585124	NM_004217.3	302	Gac/Cac																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273256	18273256	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	416	493	1	ENST00000222254.8:c.1049G>T	p.Gly350Val	p.G350V	ENST00000222254	NM_005027.3	350	gGc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0070571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	78	302	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0070571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	78	330	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878667	151878667	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs558139040		P-0070571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	79	420	0	ENST00000262189.6:c.6278C>T	p.Pro2093Leu	p.P2093L	ENST00000262189	NM_170606.2	2093	cCa/cTa																																																																															
KLF5	688	MSKCC	GRCh37	13	73636657	73636657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	138	441	0	ENST00000377687.4:c.920C>T	p.Ser307Leu	p.S307L	ENST00000377687	NM_001730.3	307	tCa/tTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0070577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	1456	306	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0070577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	77	350	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0070577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	56	327	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905522	50905522	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1408031137		P-0070577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	232	452	0	ENST00000440232.2:c.650C>T	p.Pro217Leu	p.P217L	ENST00000440232	NM_002691.3	217	cCg/cTg																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589840	69589840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	104	647	0	ENST00000168712.1:c.13G>A	p.Gly5Arg	p.G5R	ENST00000168712	NM_002007.2	5	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578450	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0070577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	309	409	0	ENST00000269305.4:c.480_481delinsTA	p.Met160_Ala161delinsIleThr	p.M160_A161delinsIT	ENST00000269305	NM_001126112.2	160	atGGcc/atTAcc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0070600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	138	355	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112173801	112173801	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs79512956		P-0070600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	35	403	0	ENST00000257430.4:c.2510C>A	p.Ser837Ter	p.S837*	ENST00000257430	NM_000038.5	837	tCa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112137082	112137082	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0070600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	87	223	0	ENST00000257430.4:c.834+2T>C		p.X278_splice	ENST00000257430	NM_000038.5	278																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15298137	15298137	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200317373		P-0070600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	59	370	3	ENST00000263388.2:c.1619C>T	p.Thr540Met	p.T540M	ENST00000263388	NM_000435.2	540	aCg/aTg																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025570	1025570	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	148	456	1	ENST00000358495.3:c.805del	p.Arg269GlyfsTer28	p.R269Gfs*28	ENST00000358495	NM_134424.2	269	Cgg/gg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023072	27023082	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCCCGCCGT	GGCCCCGCCGT	-			P-0070600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	116	329	2	ENST00000324856.7:c.180_190del	p.Pro61AlafsTer46	p.P61Afs*46	ENST00000324856	NM_006015.4	60	GGCCCCGCCGTg/g																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912181	114912181	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	203	308	0	ENST00000543371.1:c.1251G>A	p.Trp417Ter	p.W417*	ENST00000543371	NM_001198531.1	417	tgG/tgA																																																																															
ATRX	546	MSKCC	GRCh37	X	76938605	76938605	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	22	358	0	ENST00000373344.5:c.2143A>C	p.Lys715Gln	p.K715Q	ENST00000373344	NM_000489.3	715	Aaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540652		P-0070605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	14	246	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0070605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	5	217	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0070607-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	75	366	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28895689	28895689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070607-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	85	345	0	ENST00000282397.4:c.3085C>T	p.Leu1029Phe	p.L1029F	ENST00000282397	NM_002019.4	1029	Ctt/Ttt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249029	55249029	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs483352806		P-0070607-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	69	380	0	ENST00000275493.2:c.2327G>A	p.Arg776His	p.R776H	ENST00000275493	NM_005228.3	776	cGc/cAc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468373	89468373	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1242840680		P-0070607-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	33	284	0	ENST00000336596.2:c.1907G>T	p.Cys636Phe	p.C636F	ENST00000336596	NM_005233.5	636	tGc/tTc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28895623	28895623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070607-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	91	306	0	ENST00000282397.4:c.3151C>T	p.Pro1051Ser	p.P1051S	ENST00000282397	NM_002019.4	1051	Ccc/Tcc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4101103	4101103	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070607-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	28	215	0	ENST00000262948.5:c.619G>T	p.Glu207Ter	p.E207*	ENST00000262948	NM_030662.3	207	Gag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060499964		P-0070609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	164	435	0	ENST00000326873.7:c.667G>A	p.Glu223Lys	p.E223K	ENST00000326873	NM_000455.4	223	Gag/Aag																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795082	242795082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368829632		P-0070609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	101	452	0	ENST00000334409.5:c.127G>A	p.Val43Met	p.V43M	ENST00000334409	NM_005018.2	43	Gtg/Atg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600471	10600471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	180	395	0	ENST00000171111.5:c.1384G>T	p.Gly462Trp	p.G462W	ENST00000171111	NM_203500.1	462	Ggg/Tgg																																																																															
LMO1	4004	MSKCC	GRCh37	11	8248544	8248544	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs201874026		P-0070609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	94	300	0	ENST00000335790.3:c.343G>C	p.Ala115Pro	p.A115P	ENST00000335790	NM_002315.2	115	Gcc/Ccc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18719902	18719902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	122	231	0	ENST00000266497.5:c.3799C>A	p.Leu1267Ile	p.L1267I	ENST00000266497		1267	Cta/Ata																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729717	41729717	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	114	416	0	ENST00000242208.4:c.812A>T	p.Lys271Met	p.K271M	ENST00000242208	NM_002192.2	271	aAg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0070609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	99	227	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11113717	11113718	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAG			P-0070609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	160	360	0	ENST00000344626.4:c.1830_1833dup	p.Met612ProfsTer40	p.M612Pfs*40	ENST00000344626	NM_003072.3	609	acc/aCCAGcc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146808	185146808	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	100	291	0	ENST00000265026.3:c.439A>G	p.Lys147Glu	p.K147E	ENST00000265026	NM_004721.4	147	Aag/Gag																																																																															
CENPA	1058	MSKCC	GRCh37	2	27015655	27015655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	114	358	0	ENST00000335756.4:c.242G>T	p.Gly81Val	p.G81V	ENST00000335756	NM_001809.3	81	gGt/gTt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106036	8106036	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	106	381	0	ENST00000346208.3:c.856G>T	p.Ala286Ser	p.A286S	ENST00000346208		286	Gcc/Tcc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508791	106508791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	101	452	0	ENST00000359195.3:c.785C>A	p.Pro262His	p.P262H	ENST00000359195	NM_002649.2	262	cCc/cAc																																																																															
CTR9	9646	MSKCC	GRCh37	11	10785084	10785084	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0070609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	82	282	0	ENST00000361367.2:c.956A>C	p.Gln319Pro	p.Q319P	ENST00000361367	NM_014633.3	319	cAg/cCg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016616	12016616	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	59	308	0	ENST00000353533.5:c.752G>T	p.Ser251Ile	p.S251I	ENST00000353533	NM_003010.3	251	aGt/aTt																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128050269	128050269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	89	354	0	ENST00000285398.2:c.388G>T	p.Gly130Trp	p.G130W	ENST00000285398	NM_000122.1	130	Ggg/Tgg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044952	47044970	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTGTCTGCTCTGCCGAC	GCCTGTCTGCTCTGCCGAC	-			P-0070609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	91	474	0	ENST00000329236.7:c.2047_2065del	p.Cys683SerfsTer35	p.C683Sfs*35	ENST00000329236	NM_001204466.1	682	GCCTGTCTGCTCTGCCGACgc/gc																																																																															
NF1	4763	MSKCC	GRCh37	17	29490394	29490394	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0070609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	70	279	0	ENST00000358273.4:c.479G>T	p.Arg160Met	p.R160M	ENST00000358273	NM_001042492.2	160	aGg/aTg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115277062	115277063	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AT			P-0070609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	51	282	1	ENST00000438362.2:c.720_720+1delinsAT		p.X240_splice	ENST00000438362	NM_001242891.1	240																																																																																
NF1	4763	MSKCC	GRCh37	17	29587386	29587386	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0070609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	55	222	0	ENST00000358273.4:c.4431-1G>C		p.X1477_splice	ENST00000358273	NM_001042492.2	1477																																																																																
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0070615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	168	531	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0070615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	208	546	2	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981167	201981168	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0070615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	113	678	0	ENST00000359651.3:c.248dup	p.Asn83LysfsTer9	p.N83Kfs*9	ENST00000359651		82	-/A																																																																															
BARD1	580	MSKCC	GRCh37	2	215674235	215674235	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	106	454	1	ENST00000260947.4:c.59C>G	p.Pro20Arg	p.P20R	ENST00000260947	NM_000465.2	20	cCt/cGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593395	48593395	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	119	412	0	ENST00000342988.3:c.1146C>G	p.His382Gln	p.H382Q	ENST00000342988	NM_005359.5	382	caC/caG																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120130	70120130	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	317	701	3	ENST00000245479.2:c.1132C>T	p.Gln378Ter	p.Q378*	ENST00000245479	NM_000346.3	378	Cag/Tag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2972177	2972177	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	104	454	0	ENST00000396946.4:c.1562A>G	p.Asp521Gly	p.D521G	ENST00000396946	NM_032415.4	521	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0070618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			62	125	621	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173567	112173567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			53	99	537	0	ENST00000257430.4:c.2276C>T	p.Ala759Val	p.A759V	ENST00000257430	NM_000038.5	759	gCc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112175211	112175212	+	frameshift_variant	Frame_Shift_Ins	INS	TA	TA	AAT			P-0070618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			63	70	543	0	ENST00000257430.4:c.3920_3921delinsAAT	p.Ile1307LysfsTer2	p.I1307Kfs*2	ENST00000257430	NM_000038.5	1307	aTA/aAAT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0069556-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	335	472	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TT	rs730881673		P-0069556-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	133	415	0	ENST00000304494.5:c.131_132insAA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0069556-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	95	241	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441978	52441978	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069556-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	181	334	0	ENST00000460680.1:c.371del	p.Pro124LeufsTer63	p.P124Lfs*63	ENST00000460680	NM_004656.3	124	cCt/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs757274881		P-0069557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	97	489	0	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180039570	180039570	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1185976621		P-0069557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	96	378	0	ENST00000261937.6:c.3473C>T	p.Ala1158Val	p.A1158V	ENST00000261937	NM_182925.4	1158	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	44	252	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191020	185191020	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1363193130		P-0069557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	81	465	0	ENST00000265026.3:c.1901A>G	p.His634Arg	p.H634R	ENST00000265026	NM_004721.4	634	cAt/cGt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99169351	99169351	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0069557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	36	378	0	ENST00000074304.5:c.1281C>G	p.Tyr427Ter	p.Y427*	ENST00000074304	NM_001134224.1	427	taC/taG																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737863	145737863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	83	487	0	ENST00000428558.2:c.2967G>T	p.Met989Ile	p.M989I	ENST00000428558	NM_004260.3	989	atG/atT																																																																															
ATM	472	MSKCC	GRCh37	11	108213990	108213990	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	97	330	0	ENST00000278616.4:c.8310C>A	p.Cys2770Ter	p.C2770*	ENST00000278616	NM_000051.3	2770	tgC/tgA																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971125	21971126	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGTG			P-0069557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	52	443	0	ENST00000304494.5:c.228_232dup	p.Leu78ProfsTer70	p.L78Pfs*70	ENST00000304494	NM_000077.4	78	ctc/cCACTCtc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0069559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	71	286	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540652		P-0069559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	186	314	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	141	249	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
WT1	7490	MSKCC	GRCh37	11	32450100	32450100	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	348	439	0	ENST00000332351.3:c.712C>A	p.Gln238Lys	p.Q238K	ENST00000332351	NM_024426.4	238	Cag/Aag																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733470	85733470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	48	357	0	ENST00000370580.1:c.542G>A	p.Arg181Lys	p.R181K	ENST00000370580	NM_003921.4	181	aGa/aAa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99456457	99456457	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	53	396	0	ENST00000268035.6:c.1774G>C	p.Asp592His	p.D592H	ENST00000268035	NM_000875.3	592	Gac/Cac																																																																															
UPF1	5976	MSKCC	GRCh37	19	18966738	18966738	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	193	461	0	ENST00000262803.5:c.1549G>T	p.Val517Leu	p.V517L	ENST00000262803	NM_002911.3	517	Gtg/Ttg																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724162	112724162	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	85	169	0	ENST00000369452.4:c.46C>G	p.Pro16Ala	p.P16A	ENST00000369452	NM_007373.3	16	Ccc/Gcc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210723	2210723	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1200812026		P-0069559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	111	524	0	ENST00000398665.3:c.1220C>T	p.Ala407Val	p.A407V	ENST00000398665	NM_032482.2	407	gCt/gTt																																																																															
BTK	695	MSKCC	GRCh37	X	100611878	100611878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	96	312	0	ENST00000308731.7:c.1243G>A	p.Val415Ile	p.V415I	ENST00000308731	NM_000061.2	415	Gta/Ata																																																																															
ATRX	546	MSKCC	GRCh37	X	76888709	76888709	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782142791		P-0069559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	168	270	0	ENST00000373344.5:c.5120C>T	p.Ala1707Val	p.A1707V	ENST00000373344	NM_000489.3	1707	gCt/gTt																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61328320	61328320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	65	278	0	ENST00000283752.5:c.131G>T	p.Gly44Val	p.G44V	ENST00000283752	NM_006919.2	44	gGa/gTa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197840	123197840	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	62	293	0	ENST00000218089.9:c.1964G>C	p.Ser655Thr	p.S655T	ENST00000218089	NM_001042749.1	655	aGt/aCt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115279428	115279428	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	57	283	0	ENST00000438362.2:c.589C>G	p.Gln197Glu	p.Q197E	ENST00000438362	NM_001242891.1	197	Cag/Gag																																																																															
MET	4233	MSKCC	GRCh37	7	116371847	116371847	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	72	291	0	ENST00000397752.3:c.1326A>G	p.Ile442Met	p.I442M	ENST00000397752	NM_000245.2	442	atA/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750600586		P-0069563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			825	43	374	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216087	7216087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			742	58	370	0	ENST00000380728.2:c.972C>A	p.Phe324Leu	p.F324L	ENST00000380728		324	ttC/ttA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	37	265	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212589866	212589866	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs561236916		P-0069563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	37	378	0	ENST00000342788.4:c.676G>A	p.Val226Ile	p.V226I	ENST00000342788	NM_005235.2	226	Gtc/Atc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742797	145742797	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0069565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	31	354	0	ENST00000428558.2:c.213+1G>C		p.X71_splice	ENST00000428558	NM_004260.3	71																																																																																
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0069566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	175	431	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
ATM	472	MSKCC	GRCh37	11	108236085	108236085	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	129	397	0	ENST00000278616.4:c.9021A>T	p.Glu3007Asp	p.E3007D	ENST00000278616	NM_000051.3	3007	gaA/gaT																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391266	139391266	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752136178		P-0069566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			792	93	549	0	ENST00000277541.6:c.6925G>A	p.Glu2309Lys	p.E2309K	ENST00000277541	NM_017617.3	2309	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913240		P-0069566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			755	342	304	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393570	139393570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	95	471	0	ENST00000277541.6:c.6076G>A	p.Asp2026Asn	p.D2026N	ENST00000277541	NM_017617.3	2026	Gac/Aac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391319	139391319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			729	93	542	0	ENST00000277541.6:c.6872G>A	p.Gly2291Glu	p.G2291E	ENST00000277541	NM_017617.3	2291	gGa/gAa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039278	47039278	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0069566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	73	488	0	ENST00000329236.7:c.671-1G>T		p.X224_splice	ENST00000329236	NM_001204466.1	224																																																																																
MTOR	2475	MSKCC	GRCh37	1	11259641	11259641	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	145	448	0	ENST00000361445.4:c.4064A>T	p.Gln1355Leu	p.Q1355L	ENST00000361445	NM_004958.3	1355	cAg/cTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157488254	157488254	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs780818465		P-0069566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	161	410	0	ENST00000346085.5:c.2960C>G	p.Ser987Cys	p.S987C	ENST00000346085	NM_020732.3	987	tCt/tGt																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082379	16082379	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	150	466	0	ENST00000281043.3:c.193C>G	p.Arg65Gly	p.R65G	ENST00000281043	NM_005378.4	65	Cgt/Ggt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923733	39923734	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0069566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	128	444	0	ENST00000378444.4:c.3357_3358delinsTT	p.Gln1119_Val1120delinsHisLeu	p.Q1119_V1120delinsHL	ENST00000378444	NM_001123385.1	1119	caGGtg/caTTtg																																																																															
BTK	695	MSKCC	GRCh37	X	100604933	100604933	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	93	217	0	ENST00000308731.7:c.1920G>C	p.Glu640Asp	p.E640D	ENST00000308731	NM_000061.2	640	gaG/gaC																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248179	110248179	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	145	282	0	ENST00000374672.4:c.1293C>G	p.Asp431Glu	p.D431E	ENST00000374672	NM_004235.4	431	gaC/gaG																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390648	139390648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			777	98	470	0	ENST00000277541.6:c.7543G>A	p.Glu2515Lys	p.E2515K	ENST00000277541	NM_017617.3	2515	Gag/Aag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68942861	68942861	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	53	376	0	ENST00000288368.4:c.673G>T	p.Glu225Ter	p.E225*	ENST00000288368	NM_024870.2	225	Gag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108121444	108121444	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	90	302	0	ENST00000278616.4:c.1252C>T	p.Gln418Ter	p.Q418*	ENST00000278616	NM_000051.3	418	Caa/Taa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375051	31375051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	171	473	0	ENST00000328111.2:c.448G>A	p.Ala150Thr	p.A150T	ENST00000328111	NM_006892.3	150	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	60	475	0	ENST00000269305.4:c.569del	p.Pro190LeufsTer57	p.P190Lfs*57	ENST00000269305	NM_001126112.2	190	cCt/ct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222932	36222932	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374674556		P-0069567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	53	517	0	ENST00000222270.7:c.5561C>T	p.Pro1854Leu	p.P1854L	ENST00000222270	NM_014727.1	1854	cCt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0069567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			58	42	233	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69000032	69000032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			89	20	284	0	ENST00000288368.4:c.2101G>A	p.Ala701Thr	p.A701T	ENST00000288368	NM_024870.2	701	Gct/Act																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374987	45374987	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			63	28	337	0	ENST00000262160.6:c.856G>T	p.Val286Phe	p.V286F	ENST00000262160	NM_005901.5	286	Gtt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069568-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	188	549	0	ENST00000269305.4:c.398T>G	p.Met133Arg	p.M133R	ENST00000269305	NM_001126112.2	133	aTg/aGg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729609	41729609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069568-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			739	89	703	0	ENST00000242208.4:c.920G>A	p.Arg307Gln	p.R307Q	ENST00000242208	NM_002192.2	307	cGg/cAg																																																																															
ATM	472	MSKCC	GRCh37	11	108106510	108106510	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069568-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	43	464	0	ENST00000278616.4:c.445A>T	p.Ile149Phe	p.I149F	ENST00000278616	NM_000051.3	149	Att/Ttt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829904	72829914	+	frameshift_variant	Frame_Shift_Del	DEL	GAGTCAATCTT	GAGTCAATCTT	-			P-0069568-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			724	85	562	0	ENST00000268489.5:c.6667_6677del	p.Lys2223ProfsTer44	p.K2223Pfs*44	ENST00000268489	NM_006885.3	2223	AAGATTGACTCc/c																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	-	rs121913425		P-0069574-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	723	295	0	ENST00000275493.2:c.2237_2251del	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gca																																																																															
AXIN1	8312	MSKCC	GRCh37	16	341277	341277	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756175655		P-0069574-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			275	45	275	0	ENST00000262320.3:c.2207G>A	p.Arg736Gln	p.R736Q	ENST00000262320	NM_003502.3	736	cGg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877876	151877876	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069574-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			558	202	364	0	ENST00000262189.6:c.7069G>C	p.Gly2357Arg	p.G2357R	ENST00000262189	NM_170606.2	2357	Gga/Cga																																																																															
MSH2	4436	MSKCC	GRCh37	2	47641412	47641412	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069574-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			185	31	187	0	ENST00000233146.2:c.797C>G	p.Ala266Gly	p.A266G	ENST00000233146	NM_000251.2	266	gCa/gGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7573977	7573978	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-	rs1131691008		P-0069574-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			206	44	302	0	ENST00000269305.4:c.1049_1050del	p.Leu350GlnfsTer31	p.L350Qfs*31	ENST00000269305	NM_001126112.2	350	cTC/c																																																																															
NSD1	64324	MSKCC	GRCh37	5	176673763	176673763	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069574-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			243	43	309	0	ENST00000439151.2:c.4463A>G	p.Asn1488Ser	p.N1488S	ENST00000439151	NM_022455.4	1488	aAt/aGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879259	151879259	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069574-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			579	186	366	0	ENST00000262189.6:c.5686G>C	p.Asp1896His	p.D1896H	ENST00000262189	NM_170606.2	1896	Gat/Cat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878261	151878261	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069574-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			609	216	415	0	ENST00000262189.6:c.6684G>C	p.Arg2228Ser	p.R2228S	ENST00000262189	NM_170606.2	2228	agG/agC																																																																															
BARD1	580	MSKCC	GRCh37	2	215645933	215645934	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0069574-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			204	32	340	0	ENST00000260947.4:c.664_665delinsTT	p.Ala222Leu	p.A222L	ENST00000260947	NM_000465.2	222	GCa/TTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878518	151878518	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069574-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			604	200	388	0	ENST00000262189.6:c.6427G>C	p.Asp2143His	p.D2143H	ENST00000262189	NM_170606.2	2143	Gat/Cat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879195	151879195	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069574-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			562	176	395	0	ENST00000262189.6:c.5750G>C	p.Arg1917Thr	p.R1917T	ENST00000262189	NM_170606.2	1917	aGa/aCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0069586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	19	208	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577569	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGAACTGTTACA	CAGGAACTGTTACA	-			P-0069586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	69	310	0	ENST00000269305.4:c.712_725del	p.Cys238HisfsTer21	p.C238Hfs*21	ENST00000269305	NM_001126112.2	238	TGTAACAGTTCCTGc/c																																																																															
ATRX	546	MSKCC	GRCh37	X	76931793	76931793	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0069586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	17	238	0	ENST00000373344.5:c.3737G>A	p.Gly1246Glu	p.G1246E	ENST00000373344	NM_000489.3	1246	gGa/gAa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971200	21971226	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCATGACCTGCCAGAGAGAACAGAAT	ATCATGACCTGCCAGAGAGAACAGAAT	-			P-0069586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	59	367	0	ENST00000304494.5:c.151-19_158del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121912580		P-0069589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	97	273	0	ENST00000342988.3:c.1157G>T	p.Gly386Val	p.G386V	ENST00000342988	NM_005359.5	386	gGt/gTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540003	187540003	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	104	340	0	ENST00000441802.2:c.7737C>G	p.Phe2579Leu	p.F2579L	ENST00000441802	NM_005245.3	2579	ttC/ttG																																																																															
FANCA	2175	MSKCC	GRCh37	16	89842203	89842203	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs533599861		P-0069589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	102	312	0	ENST00000389301.3:c.1847C>G	p.Ser616Cys	p.S616C	ENST00000389301	NM_000135.2	616	tCt/tGt																																																																															
ATRX	546	MSKCC	GRCh37	X	76829756	76829756	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	68	242	0	ENST00000373344.5:c.6285del	p.Lys2096ArgfsTer13	p.K2096Rfs*13	ENST00000373344	NM_000489.3	2095	agG/ag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0069595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	187	300	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685287	89685287	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	68	248	0	ENST00000371953.3:c.182A>C	p.His61Pro	p.H61P	ENST00000371953	NM_000314.4	61	cAt/cCt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946370	2946370	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201877328		P-0069595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	129	350	0	ENST00000396946.4:c.3367G>A	p.Asp1123Asn	p.D1123N	ENST00000396946	NM_032415.4	1123	Gac/Aac																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427735	72427735	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	86	358	0	ENST00000477973.2:c.753T>C	p.Val252Ala	p.V252A	ENST00000477973	NM_012234.5	252	gTg/gCg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106519993	106519993	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	44	241	0	ENST00000359195.3:c.2421G>C	p.Lys807Asn	p.K807N	ENST00000359195	NM_002649.2	807	aaG/aaC																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652321	36652321	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0069595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	105	311	0	ENST00000244741.5:c.443C>T	p.Thr148Ile	p.T148I	ENST00000244741	NM_000389.4	148	aCa/aTa																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30129063	30129063	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	60	336	0	ENST00000263025.4:c.703C>G	p.Leu235Val	p.L235V	ENST00000263025	NM_002746.2	235	Ctg/Gtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0069598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	113	331	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041662	47041662	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	79	324	0	ENST00000329236.7:c.1653del	p.Ala553HisfsTer73	p.A553Hfs*73	ENST00000329236	NM_001204466.1	551	acA/ac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0069603-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	81	274	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0069604-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	32	312	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069604-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	101	374	0	ENST00000250448.2:c.798C>G	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttG																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719758	190719758	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069604-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	41	306	0	ENST00000441310.2:c.1760C>G	p.Pro587Arg	p.P587R	ENST00000441310	NM_000534.4	587	cCt/cGt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103519020	103519591	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCCATGGAAGCAGAGGCGCAGTGCGCCATCCTGGACCTGACTGATCAGACTTCCGGAACCATCACTGATGACAGTGATATCTGGCTGTTTGGAGCGCGGCATGTCTATAGAAACTTTTTTAATAAAAACAAGTTTGTAGAATATTATCAATATGTGGACTTTCACAATCAATTGGGTAAGACTTCAGAGTCTTTTTGATTACTTTCTGACATTTACCTTCAGAGTTTGTCCTAGGAAGTTTTCTTTCCAAGGAACTAGTTTGATGCATTGATGGAAATTGCAGGTCTATGCAAATTTTTATATGAGTGATCTTTGGCTTATATAGAGGAATAGGATTTTAAACATTTGAATTAAGGAATTAAAGTCCTAGTATGTTTAGGTAGTTAATCAACTGACTTAGTTAAACTTTGACTAGTTACCCGAGATCTCCACAGTGAACAAAAGGTGGTGGAGAGGGGAAGCAGGCCGCGCCTGGGCCTGTATTCGGGTTTCTGGCACTGATCTTCTTCTGTTCATCCAGCAAATATATGTTTGGTGACTCCTATATGCCAGTTGTTCTTAACAAGAGGGA	TCCCATGGAAGCAGAGGCGCAGTGCGCCATCCTGGACCTGACTGATCAGACTTCCGGAACCATCACTGATGACAGTGATATCTGGCTGTTTGGAGCGCGGCATGTCTATAGAAACTTTTTTAATAAAAACAAGTTTGTAGAATATTATCAATATGTGGACTTTCACAATCAATTGGGTAAGACTTCAGAGTCTTTTTGATTACTTTCTGACATTTACCTTCAGAGTTTGTCCTAGGAAGTTTTCTTTCCAAGGAACTAGTTTGATGCATTGATGGAAATTGCAGGTCTATGCAAATTTTTATATGAGTGATCTTTGGCTTATATAGAGGAATAGGATTTTAAACATTTGAATTAAGGAATTAAAGTCCTAGTATGTTTAGGTAGTTAATCAACTGACTTAGTTAAACTTTGACTAGTTACCCGAGATCTCCACAGTGAACAAAAGGTGGTGGAGAGGGGAAGCAGGCCGCGCCTGGGCCTGTATTCGGGTTTCTGGCACTGATCTTCTTCTGTTCATCCAGCAAATATATGTTTGGTGACTCCTATATGCCAGTTGTTCTTAACAAGAGGGA	-			P-0069604-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	26	315	0	ENST00000355739.4:c.2358_2533+396del		p.X786_splice	ENST00000355739	NM_000123.3	786																																																																																
MYCL	4610	MSKCC	GRCh37	1	40367109	40367110	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0069604-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	31	450	0	ENST00000397332.2:c.87_88del	p.Asp30HisfsTer14	p.D30Hfs*14	ENST00000397332	NM_001033082.2	29	gcGGac/gcac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438532	49438532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069604-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	52	257	0	ENST00000301067.7:c.4958G>A	p.Gly1653Asp	p.G1653D	ENST00000301067	NM_003482.3	1653	gGt/gAt																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14020471	14020471	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1436917947		P-0069604-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	54	276	0	ENST00000311895.7:c.442A>C	p.Ile148Leu	p.I148L	ENST00000311895	NM_005236.2	148	Atc/Ctc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	126	345	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	182	319	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	92	393	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913286		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	46	168	0	ENST00000263967.3:c.1636C>G	p.Gln546Glu	p.Q546E	ENST00000263967	NM_006218.2	546	Cag/Gag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968322	2968323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762770988		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	59	308	0	ENST00000396946.4:c.1663dup	p.Arg555ProfsTer38	p.R555Pfs*38	ENST00000396946	NM_032415.4	555	cgg/cCgg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1400980130		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	38	342	1	ENST00000264010.4:c.2070del	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692981	89692982	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	35	314	0	ENST00000371953.3:c.469dup	p.Glu157GlyfsTer23	p.E157Gfs*23	ENST00000371953	NM_000314.4	155	-/G																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	203	434	0	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	72	282	6	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	123	327	0	ENST00000281708.4:c.1393C>A	p.Arg465Ser	p.R465S	ENST00000281708	NM_033632.3	465	Cgt/Agt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	85	246	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907421	32907421	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs80359307		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	102	325	2	ENST00000380152.3:c.1813del	p.Ile605TyrfsTer9	p.I605Yfs*9	ENST00000380152		602	ggA/gg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100727	8100728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs771019738		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	134	355	2	ENST00000346208.3:c.708dup	p.Ser237GlnfsTer66	p.S237Qfs*66	ENST00000346208		234	ttc/ttCc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	36	389	2	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
APC	324	MSKCC	GRCh37	5	112175101	112175101	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	113	293	0	ENST00000257430.4:c.3814del	p.Ser1272GlnfsTer16	p.S1272Qfs*16	ENST00000257430	NM_000038.5	1270	tgT/tg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3801727	3801727	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs777015995		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	145	308	0	ENST00000262367.5:c.3779C>T	p.Thr1260Met	p.T1260M	ENST00000262367	NM_004380.2	1260	aCg/aTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524567	103524568	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs759551120		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	87	275	0	ENST00000355739.4:c.2705dup	p.Asn902LysfsTer7	p.N902Kfs*7	ENST00000355739	NM_000123.3	900	caa/cAaa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416952	416953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs771545848		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	105	382	7	ENST00000399788.2:c.3597dup	p.Gly1200ArgfsTer7	p.G1200Rfs*7	ENST00000399788	NM_001042603.1	1199	-/A																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	129	243	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	108	457	0	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	131	475	2	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
ALK	238	MSKCC	GRCh37	2	29498316	29498316	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	90	330	0	ENST00000389048.3:c.1864A>G	p.Ile622Val	p.I622V	ENST00000389048	NM_004304.4	622	Atc/Gtc																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137522041	137522041	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	41	243	0	ENST00000367739.4:c.838del	p.Ser280AlafsTer2	p.S280Afs*2	ENST00000367739	NM_000416.2	280	Agc/gc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717719	89717720	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-	rs780264945		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	48	236	0	ENST00000371953.3:c.750_751del	p.Cys250TrpfsTer2	p.C250Wfs*2	ENST00000371953	NM_000314.4	248	ccTGtg/cctg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300039	137300040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755912201		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	48	279	0	ENST00000481739.1:c.331dup	p.Leu111ProfsTer70	p.L111Pfs*70	ENST00000481739	NM_002957.4	108	-/C																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367969	15367969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759001252		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	98	306	0	ENST00000263377.2:c.1357C>T	p.Arg453Cys	p.R453C	ENST00000263377	NM_058243.2	453	Cgc/Tgc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025765	48025765	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145959653		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	53	267	0	ENST00000234420.5:c.643G>A	p.Val215Ile	p.V215I	ENST00000234420	NM_000179.2	215	Gta/Ata																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662441	117662441	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs761904834		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	163	357	0	ENST00000368508.3:c.4936A>G	p.Thr1646Ala	p.T1646A	ENST00000368508	NM_002944.2	1646	Aca/Gca																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191026	185191026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	130	414	0	ENST00000265026.3:c.1907C>A	p.Ser636Tyr	p.S636Y	ENST00000265026	NM_004721.4	636	tCt/tAt																																																																															
BCL10	8915	MSKCC	GRCh37	1	85736457	85736457	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	60	354	0	ENST00000370580.1:c.190A>G	p.Arg64Gly	p.R64G	ENST00000370580	NM_003921.4	64	Agg/Ggg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479831	67479831	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	97	329	0	ENST00000327367.4:c.1138T>C	p.Trp380Arg	p.W380R	ENST00000327367	NM_005902.3	380	Tgg/Cgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913527		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	129	255	0	ENST00000256078.4:c.436G>C	p.Ala146Pro	p.A146P	ENST00000256078	NM_033360.2	146	Gca/Cca																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488893	231488894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs567805129		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	104	329	0	ENST00000295050.7:c.1263dup	p.Ile422TyrfsTer11	p.I422Yfs*11	ENST00000295050	NM_032018.5	419	aat/aaTt																																																																															
CTR9	9646	MSKCC	GRCh37	11	10794726	10794726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1397467879		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	170	300	0	ENST00000361367.2:c.2633G>A	p.Arg878Gln	p.R878Q	ENST00000361367	NM_014633.3	878	cGg/cAg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852224	63852224	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	37	387	0	ENST00000279873.7:c.3002T>C	p.Met1001Thr	p.M1001T	ENST00000279873	NM_032199.2	1001	aTg/aCg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40871160	40871160	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	106	173	0	ENST00000428826.2:c.730T>C	p.Phe244Leu	p.F244L	ENST00000428826		244	Ttc/Ctc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12650746	12650746	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	75	285	0	ENST00000251849.4:c.409A>G	p.Thr137Ala	p.T137A	ENST00000251849	NM_002880.3	137	Aca/Gca																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265365	152265365	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	89	353	0	ENST00000206249.3:c.818A>G	p.Asp273Gly	p.D273G	ENST00000206249	NM_000125.3	273	gAt/gGt																																																																															
ATR	545	MSKCC	GRCh37	3	142172071	142172071	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	97	216	0	ENST00000350721.4:c.7660T>G	p.Leu2554Val	p.L2554V	ENST00000350721	NM_001184.3	2554	Tta/Gta																																																																															
AURKA	6790	MSKCC	GRCh37	20	54948462	54948462	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	113	240	0	ENST00000312783.6:c.854+2T>C		p.X285_splice	ENST00000312783	NM_198436.1	285																																																																																
SDHA	6389	MSKCC	GRCh37	5	223685	223685	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	26	163	0	ENST00000264932.6:c.150+2T>C		p.X50_splice	ENST00000264932	NM_004168.2	50																																																																																
MTOR	2475	MSKCC	GRCh37	1	11168253	11168253	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs111575164		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	88	249	0	ENST00000361445.4:c.7619A>G	p.Gln2540Arg	p.Q2540R	ENST00000361445	NM_004958.3	2540	cAg/cGg																																																																															
RAD51	5888	MSKCC	GRCh37	15	41023304	41023305	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	143	279	0	ENST00000267868.3:c.951_952del	p.Pro318LeufsTer4	p.P318Lfs*4	ENST00000267868	NM_002875.4	316	gaCTct/gact																																																																															
CTR9	9646	MSKCC	GRCh37	11	10792033	10792033	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	42	275	0	ENST00000361367.2:c.2227-1G>T		p.X743_splice	ENST00000361367	NM_014633.3	743																																																																																
TAP2	6891	MSKCC	GRCh37	6	32797270	32797270	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	109	375	0	ENST00000374899.4:c.1839A>T	p.Gln613His	p.Q613H	ENST00000374899	NM_018833.2	613	caA/caT																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51504683	51504683	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	98	316	0	ENST00000260433.2:c.1097A>G	p.Tyr366Cys	p.Y366C	ENST00000260433		366	tAc/tGc																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47606958	47606959	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	90	327	0	ENST00000263735.4:c.712dup	p.Glu238GlyfsTer16	p.E238Gfs*16	ENST00000263735	NM_002354.2	236	-/G																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197333	26197333	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	207	560	0	ENST00000356476.2:c.146T>G	p.Leu49Arg	p.L49R	ENST00000356476		49	cTg/cGg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257402	19257402	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	111	390	0	ENST00000162023.5:c.731del	p.Pro244HisfsTer?	p.P244Hfs*?	ENST00000162023		244	cCa/ca																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800402	32800402	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	96	383	0	ENST00000374899.4:c.1143+2T>C		p.X381_splice	ENST00000374899	NM_018833.2	381																																																																																
TAP1	6890	MSKCC	GRCh37	6	32818170	32818170	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	80	340	0	ENST00000354258.4:c.1355A>G	p.Glu452Gly	p.E452G	ENST00000354258	NM_000593.5	452	gAa/gGa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98220386	98220386	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs763031827		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	108	371	0	ENST00000331920.6:c.3077A>G	p.His1026Arg	p.H1026R	ENST00000331920	NM_000264.3	1026	cAc/cGc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541834	187541834	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	98	345	0	ENST00000441802.2:c.5906T>C	p.Val1969Ala	p.V1969A	ENST00000441802	NM_005245.3	1969	gTg/gCg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039847	47039847	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	127	152	0	ENST00000329236.7:c.956T>C	p.Ile319Thr	p.I319T	ENST00000329236	NM_001204466.1	319	aTc/aCc																																																																															
AXL	558	MSKCC	GRCh37	19	41762391	41762391	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	80	329	0	ENST00000301178.4:c.2071T>C	p.Phe691Leu	p.F691L	ENST00000301178	NM_021913.4	691	Ttc/Ctc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180038358	180038358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	123	390	0	ENST00000261937.6:c.3659G>A	p.Ser1220Asn	p.S1220N	ENST00000261937	NM_182925.4	1220	aGc/aAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55224467	55224467	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	31	371	0	ENST00000275493.2:c.1149T>G	p.His383Gln	p.H383Q	ENST00000275493	NM_005228.3	383	caT/caG																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136919	64136919	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	66	275	0	ENST00000334205.4:c.1430T>C	p.Leu477Pro	p.L477P	ENST00000334205	NM_003942.2	477	cTg/cCg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879243	151879244	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	157	377	0	ENST00000262189.6:c.5701dup	p.Met1901AsnfsTer13	p.M1901Nfs*13	ENST00000262189	NM_170606.2	1901	atg/aAtg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205738	128205738	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	89	403	0	ENST00000341105.2:c.137A>G	p.Asp46Gly	p.D46G	ENST00000341105	NM_032638.4	46	gAc/gGc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245419	46245419	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	107	375	0	ENST00000334344.6:c.3513G>T	p.Gln1171His	p.Q1171H	ENST00000334344	NM_152641.2	1171	caG/caT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992977	72992977	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	56	390	0	ENST00000268489.5:c.1068C>G	p.Asn356Lys	p.N356K	ENST00000268489	NM_006885.3	356	aaC/aaG																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350574	89350576	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	14	266	0	ENST00000301030.4:c.2374_2376del	p.Glu792del	p.E792del	ENST00000301030	NM_001256183.1	792	GAG/-																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231487255	231487256	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs752960031		P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	61	375	0	ENST00000295050.7:c.663dup	p.Gly222ArgfsTer18	p.G222Rfs*18	ENST00000295050	NM_032018.5	219	tca/tcAa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67462909	67462909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	118	296	0	ENST00000327367.4:c.625C>T	p.Pro209Ser	p.P209S	ENST00000327367	NM_005902.3	209	Ccg/Tcg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467622	66467622	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	70	340	0	ENST00000273854.3:c.647A>G	p.Asp216Gly	p.D216G	ENST00000273854	NM_004439.5	216	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0069606-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	52	413	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475063	40475063	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069606-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	70	323	0	ENST00000264657.5:c.1847A>G	p.Glu616Gly	p.E616G	ENST00000264657	NM_139276.2	616	gAa/gGa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619277	37619278	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0069606-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	69	355	0	ENST00000447079.4:c.955dup	p.Tyr319LeufsTer32	p.Y319Lfs*32	ENST00000447079	NM_015083.1	318	tct/tcTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242478	+	protein_altering_variant	In_Frame_Del	DEL	ATTAAGAGAAG	ATTAAGAGAAG	GC	rs121913435		P-0069606-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	59	282	0	ENST00000275493.2:c.2238_2248delinsGC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGca/gaGCca																																																																															
SDHD	6392	MSKCC	GRCh37	11	111965527	111965527	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0069616-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	18	364	0	ENST00000375549.3:c.315-2A>G		p.X105_splice	ENST00000375549	NM_003002.3	105																																																																																
ALK	238	MSKCC	GRCh37	2	29451823	29451828	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCCA	CCCCCA	CTTTT			P-0069616-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	15	243	0	ENST00000389048.3:c.2737_2741delinsAAAA	p.Trp913LysfsTer26	p.W913Kfs*26	ENST00000389048	NM_004304.4	913	TGGGGG/AAAAG																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730919	40730919	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1478583387		P-0069616-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	33	550	0	ENST00000373198.4:c.3616C>A	p.Pro1206Thr	p.P1206T	ENST00000373198	NM_133170.3	1206	Ccc/Acc																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913355		P-0069616-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	17	385	0	ENST00000288602.6:c.1406G>T	p.Gly469Val	p.G469V	ENST00000288602	NM_004333.4	469	gGa/gTa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039658	47039659	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069616-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	41	257	0	ENST00000329236.7:c.877dup	p.Thr293AsnfsTer10	p.T293Nfs*10	ENST00000329236	NM_001204466.1	292	-/A																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128017002	128017002	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs201806429		P-0069616-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	33	442	0	ENST00000285398.2:c.2087T>C	p.Met696Thr	p.M696T	ENST00000285398	NM_000122.1	696	aTg/aCg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31409198	31409199	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0069616-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	29	476	0	ENST00000344624.3:c.3818_3819delinsTT	p.Arg1273Ile	p.R1273I	ENST00000344624		1273	aGG/aTT																																																																															
MED12	9968	MSKCC	GRCh37	X	70352976	70352976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	71	409	0	ENST00000374080.3:c.4531G>A	p.Val1511Met	p.V1511M	ENST00000374080		1511	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0069621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	127	409	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106710	27106710	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	133	444	0	ENST00000324856.7:c.6324del	p.Asn2109MetfsTer26	p.N2109Mfs*26	ENST00000324856	NM_006015.4	2107	ggC/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0069621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	61	238	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112102976	112102976	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs74953290		P-0069621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	46	326	0	ENST00000257430.4:c.311C>A	p.Ser104Ter	p.S104*	ENST00000257430	NM_000038.5	104	tCa/tAa																																																																															
ATM	472	MSKCC	GRCh37	11	108165777	108165777	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	34	313	0	ENST00000278616.4:c.4900G>C	p.Ala1634Pro	p.A1634P	ENST00000278616	NM_000051.3	1634	Gct/Cct																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0069625-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			402	76	569	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0069625-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			266	80	392	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0069625-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			261	121	574	1	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374929	45374929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069625-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			287	166	552	0	ENST00000262160.6:c.914C>T	p.Pro305Leu	p.P305L	ENST00000262160	NM_005901.5	305	cCa/cTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714424	40714424	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747347462		P-0069625-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			333	86	525	0	ENST00000373198.4:c.3973G>A	p.Ala1325Thr	p.A1325T	ENST00000373198	NM_133170.3	1325	Gca/Aca																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119114	70119114	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0069625-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			252	149	600	0	ENST00000245479.2:c.685+1G>A		p.X229_splice	ENST00000245479	NM_000346.3	229																																																																																
SMAD3	4088	MSKCC	GRCh37	15	67473644	67473644	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069625-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			248	169	534	0	ENST00000327367.4:c.724C>T	p.Gln242Ter	p.Q242*	ENST00000327367	NM_005902.3	242	Cag/Tag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212652803	212652803	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200302763		P-0069625-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			262	78	476	0	ENST00000342788.4:c.503G>A	p.Arg168Gln	p.R168Q	ENST00000342788	NM_005235.2	168	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0069625-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			272	61	336	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366960	15366960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069625-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	97	614	0	ENST00000263377.2:c.1666G>A	p.Glu556Lys	p.E556K	ENST00000263377	NM_058243.2	556	Gaa/Aaa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412582	63412586	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGG	CTTGG	-			P-0069625-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			125	64	333	0	ENST00000330258.3:c.581_585del	p.Ala194GlyfsTer3	p.A194Gfs*3	ENST00000330258	NM_152424.3	194	gCCAAG/g																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099699	157099730	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCCGGTCGCCGTGCCCGGGGGCGGCGGCG	GCCGCCGGTCGCCGTGCCCGGGGGCGGCGGCG	-			P-0069625-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			94	47	332	0	ENST00000346085.5:c.639_670del	p.Pro214GlyfsTer7	p.P214Gfs*7	ENST00000346085	NM_020732.3	212	caGCCGCCGGTCGCCGTGCCCGGGGGCGGCGGCGgc/cagc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46509356	46509356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069625-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			514	38	568	0	ENST00000262741.5:c.1375C>T	p.Leu459Phe	p.L459F	ENST00000262741	NM_003629.3	459	Ctt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0069634-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			156	369	413	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0069634-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			693	312	363	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242494	55242494	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069634-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			718	304	342	0	ENST00000275493.2:c.2264C>A	p.Ala755Asp	p.A755D	ENST00000275493	NM_005228.3	755	gCc/gAc																																																																															
MAX	4149	MSKCC	GRCh37	14	65560425	65560425	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0069634-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			141	321	307	0	ENST00000358664.4:c.171+1G>A		p.X57_splice	ENST00000358664	NM_002382.4	57																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5220276	5220276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069634-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			120	354	435	0	ENST00000357368.4:c.3544G>A	p.Glu1182Lys	p.E1182K	ENST00000357368	NM_002850.3	1182	Gaa/Aaa																																																																															
ATR	545	MSKCC	GRCh37	3	142274809	142274809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069634-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			618	473	314	0	ENST00000350721.4:c.2251C>T	p.His751Tyr	p.H751Y	ENST00000350721	NM_001184.3	751	Cat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0069658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	24	280	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0069658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	22	198	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101867545	101867588	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCGGCGGCGGCGGCGGCGGCGCTGCTCCCGGGGGCGACGGGTGA	GCGGCGGCGGCGGCGGCGGCGCTGCTCCCGGGGGCGACGGGTGA	-			P-0069658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	16	174	0	ENST00000374994.4:c.67_97+13del		p.X23_splice	ENST00000374994	NM_004612.2	23																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0069659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	8	253	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0069659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	71	276	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
GNB1	2782	MSKCC	GRCh37	1	1756850	1756850	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	120	297	0	ENST00000378609.4:c.43A>C	p.Lys15Gln	p.K15Q	ENST00000378609	NM_002074.3	15	Aag/Cag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	461430	461430	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	117	343	0	ENST00000399788.2:c.1090C>T	p.Gln364Ter	p.Q364*	ENST00000399788	NM_001042603.1	364	Cag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29560112	29560113	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0069659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	151	467	0	ENST00000358273.4:c.3590_3591dup	p.Glu1198GlnfsTer18	p.E1198Qfs*18	ENST00000358273	NM_001042492.2	1197	gca/gCAca																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349723	89349726	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-	rs1064794330		P-0069659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	137	470	0	ENST00000301030.4:c.3224_3227del	p.Glu1075GlyfsTer242	p.E1075Gfs*242	ENST00000301030	NM_001256183.1	1075	gAAAGg/gg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86659276	86659276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	145	367	0	ENST00000274376.6:c.1565T>A	p.Leu522His	p.L522H	ENST00000274376	NM_002890.2	522	cTc/cAc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417829	138417829	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	73	301	0	ENST00000289153.2:c.1690G>C	p.Asp564His	p.D564H	ENST00000289153	NM_006219.2	564	Gac/Cac																																																																															
NF1	4763	MSKCC	GRCh37	17	29533315	29533316	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0069659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	120	452	0	ENST00000358273.4:c.1318_1319del	p.Arg440LysfsTer5	p.R440Kfs*5	ENST00000358273	NM_001042492.2	440	CGa/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0069666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	46	202	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272498	15272498	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200541224		P-0069666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	55	273	0	ENST00000263388.2:c.5941C>T	p.Arg1981Cys	p.R1981C	ENST00000263388	NM_000435.2	1981	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	27	161	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44945198	44945198	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069666-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			62	33	231	0	ENST00000377967.4:c.3522G>A	p.Trp1174Ter	p.W1174*	ENST00000377967	NM_021140.2	1174	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0069669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	223	266	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0069669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	247	294	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878862	151878862	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778364715		P-0069669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	272	353	0	ENST00000262189.6:c.6083G>A	p.Arg2028Gln	p.R2028Q	ENST00000262189	NM_170606.2	2028	cGa/cAa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031882	26031882	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756571457		P-0069669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	135	330	1	ENST00000244661.2:c.407C>T	p.Ala136Val	p.A136V	ENST00000244661	NM_003537.3	136	gCg/gTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106155562	106155562	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	123	289	0	ENST00000380013.4:c.463G>T	p.Ala155Ser	p.A155S	ENST00000380013	NM_001127208.2	155	Gcc/Tcc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44941908	44942072	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTAGTATTTCTTTTTAAAAGGCATGTTTCTAATACTGTGTCTCTTTTTTAAGTTCTGGGAGGAGGAGGAAAGGACCCTTTAAAACCATAAAGTTTGGGACCAATATTGACCTATCTGATGACAAAAAGTAAGTCCTTGTAGTAATATTTCTGTGAACTGATGCAA	TTAGTATTTCTTTTTAAAAGGCATGTTTCTAATACTGTGTCTCTTTTTTAAGTTCTGGGAGGAGGAGGAAAGGACCCTTTAAAACCATAAAGTTTGGGACCAATATTGACCTATCTGATGACAAAAAGTAAGTCCTTGTAGTAATATTTCTGTGAACTGATGCAA	-			P-0069669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	83	237	0	ENST00000377967.4:c.3209+23_3284+38del		p.X1070_splice	ENST00000377967	NM_021140.2	1070																																																																																
BCL6	604	MSKCC	GRCh37	3	187444583	187444583	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	230	322	0	ENST00000232014.4:c.1644T>G	p.Cys548Trp	p.C548W	ENST00000232014	NM_001130845.1	548	tgT/tgG																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584530	48584530	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	34	304	0	ENST00000342988.3:c.703G>T	p.Glu235Ter	p.E235*	ENST00000342988	NM_005359.5	235	Gaa/Taa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341197	8341197	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	97	270	0	ENST00000356435.5:c.5019T>G	p.Asn1673Lys	p.N1673K	ENST00000356435		1673	aaT/aaG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0069670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	181	433	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578397	7578397	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	224	525	0	ENST00000269305.4:c.533A>C	p.His178Pro	p.H178P	ENST00000269305	NM_001126112.2	178	cAc/cCc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060992	38061010	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGGCTGGCGGCGGGCCC	GGGGGCTGGCGGCGGGCCC	-			P-0069670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	399	481	0	ENST00000250448.2:c.979_997del	p.Gly327ArgfsTer17	p.G327Rfs*17	ENST00000250448	NM_004496.3	327	GGGCCCGCCGCCAGCCCCCag/ag																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128420052	128420052	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0069670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	68	398	0	ENST00000265960.3:c.376A>T	p.Lys126Ter	p.K126*	ENST00000265960	NM_001006617.1	126	Aaa/Taa																																																																															
CARM1	10498	MSKCC	GRCh37	19	10982595	10982595	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069672-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	18	583	0	ENST00000327064.4:c.217A>C	p.Ser73Arg	p.S73R	ENST00000327064	NM_199141.1	73	Agc/Cgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0069674-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			203	165	296	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0069674-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			221	91	288	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176054948	176054948	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069674-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			97	16	229	0	ENST00000367669.3:c.1105C>T	p.Gln369Ter	p.Q369*	ENST00000367669	NM_022457.5	369	Cag/Tag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0069675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	29	308	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			923	86	432	0	ENST00000269305.4:c.542G>C	p.Arg181Pro	p.R181P	ENST00000269305	NM_001126112.2	181	cGc/cCc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46211586	46211586	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	55	280	0	ENST00000334344.6:c.554del	p.Asn185MetfsTer30	p.N185Mfs*30	ENST00000334344	NM_152641.2	184	tcA/tc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0069678-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	44	411	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060711	38060711	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0069678-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			723	53	519	0	ENST00000250448.2:c.1278C>G	p.Tyr426Ter	p.Y426*	ENST00000250448	NM_004496.3	426	taC/taG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0069681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	60	389	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039294	47039294	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	67	468	0	ENST00000329236.7:c.686A>T	p.Asn229Ile	p.N229I	ENST00000329236	NM_001204466.1	229	aAc/aTc																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488559	231488559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	52	370	0	ENST00000295050.7:c.922G>A	p.Gly308Ser	p.G308S	ENST00000295050	NM_032018.5	308	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0069682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	142	354	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0069682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	56	379	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206651106	206651106	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148172544		P-0069682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	75	412	0	ENST00000367120.3:c.716C>T	p.Thr239Met	p.T239M	ENST00000367120	NM_014002.3	239	aCg/aTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1226561	1226561	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748202003		P-0069682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	56	291	0	ENST00000326873.7:c.1217C>T	p.Ala406Val	p.A406V	ENST00000326873	NM_000455.4	406	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0069682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	114	203	1	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
FH	2271	MSKCC	GRCh37	1	241680606	241680606	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	33	257	0	ENST00000366560.3:c.143A>G	p.Asn48Ser	p.N48S	ENST00000366560	NM_000143.3	48	aAt/aGt																																																																															
APC	324	MSKCC	GRCh37	5	112174439	112174440	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	T			P-0069682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	102	323	0	ENST00000257430.4:c.3148_3149delinsT	p.Ala1050Ter	p.A1050*	ENST00000257430	NM_000038.5	1050	GCa/Ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587782082		P-0069683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	256	359	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738338	145738338	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs555817330		P-0069683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			991	338	479	0	ENST00000428558.2:c.2647G>C	p.Glu883Gln	p.E883Q	ENST00000428558	NM_004260.3	883	Gag/Cag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0069685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	88	367	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523280	9523280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769363113		P-0069685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	50	422	0	ENST00000353224.5:c.1957C>T	p.Arg653Trp	p.R653W	ENST00000353224	NM_177990.2	653	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241678	55241678	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517085		P-0069685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	112	423	0	ENST00000275493.2:c.2126A>G	p.Glu709Gly	p.E709G	ENST00000275493	NM_005228.3	709	gAa/gGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579380	7579380	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	81	518	0	ENST00000269305.4:c.307T>A	p.Tyr103Asn	p.Y103N	ENST00000269305	NM_001126112.2	103	Tac/Aac																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198261051	198261051	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0069685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	70	322	0	ENST00000335508.6:c.3268C>T	p.Pro1090Ser	p.P1090S	ENST00000335508	NM_012433.2	1090	Cct/Tct																																																																															
ATM	472	MSKCC	GRCh37	11	108190706	108190706	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1201879809		P-0069685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	108	250	0	ENST00000278616.4:c.6373C>T	p.His2125Tyr	p.H2125Y	ENST00000278616	NM_000051.3	2125	Cat/Tat																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926884	112926884	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	180	375	0	ENST00000351677.2:c.1504T>C	p.Ser502Pro	p.S502P	ENST00000351677	NM_002834.3	502	Tca/Cca																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742144	145742144	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779891153		P-0069688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			760	207	413	0	ENST00000428558.2:c.359G>A	p.Gly120Glu	p.G120E	ENST00000428558	NM_004260.3	120	gGa/gAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972575	32972575	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80359251		P-0069688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	199	467	0	ENST00000380152.3:c.9925G>A	p.Glu3309Lys	p.E3309K	ENST00000380152		3309	Gaa/Aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591887	48591889	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0069688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	197	426	0	ENST00000342988.3:c.1052_1054del	p.Asp351del	p.D351del	ENST00000342988	NM_005359.5	350	gtTGAt/gtt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110015	115110045	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGGAGGCTGCCGCAGAGGAGGCGGCCGCC	GCTGGAGGCTGCCGCAGAGGAGGCGGCCGCC	-			P-0069688-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	210	400	0	ENST00000257566.3:c.1833_1863del	p.Ala612ArgfsTer10	p.A612Rfs*10	ENST00000257566	NM_016569.3	611	gcGGCGGCCGCCTCCTCTGCGGCAGCCTCCAGC/gc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0069689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	193	215	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TAP1	6890	MSKCC	GRCh37	6	32819912	32819912	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779607865		P-0069689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	69	397	0	ENST00000354258.4:c.998C>T	p.Thr333Met	p.T333M	ENST00000354258	NM_000593.5	333	aCg/aTg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013734	12013734	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	371	232	0	ENST00000353533.5:c.676A>T	p.Ile226Phe	p.I226F	ENST00000353533	NM_003010.3	226	Att/Ttt																																																																															
HIST2H3D	653604	MSKCC	GRCh37	1	149784831	149784831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	444	343	0	ENST00000331491.1:c.406G>A	p.Ala136Thr	p.A136T	ENST00000331491	NM_001123375.2	136	Gcc/Acc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878595	151878596	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	443	496	0	ENST00000262189.6:c.6349dup	p.Ser2117PhefsTer37	p.S2117Ffs*37	ENST00000262189	NM_170606.2	2117	tcc/tTcc																																																																															
TRIP13	9319	MSKCC	GRCh37	5	896831	896831	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	603	403	0	ENST00000166345.3:c.310G>T	p.Glu104Ter	p.E104*	ENST00000166345	NM_004237.3	104	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0069707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	481	450	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259516	+	missense_variant	Missense_Mutation	DNP	TG	TG	GT	rs1057519848		P-0069707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	269	314	0	ENST00000275493.2:c.2573_2574delinsGT	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTG/cGT																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803464	32803464	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1409379915		P-0069707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			734	54	329	0	ENST00000374899.4:c.695C>T	p.Ser232Phe	p.S232F	ENST00000374899	NM_018833.2	232	tCc/tTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151880096	151880096	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	40	246	0	ENST00000262189.6:c.5228G>C	p.Arg1743Thr	p.R1743T	ENST00000262189	NM_170606.2	1743	aGa/aCa																																																																															
ATR	545	MSKCC	GRCh37	3	142215276	142215276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	77	226	0	ENST00000350721.4:c.5825A>G	p.Asn1942Ser	p.N1942S	ENST00000350721	NM_001184.3	1942	aAt/aGt																																																																															
EZH2	2146	MSKCC	GRCh37	7	148513857	148513858	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	73	279	0	ENST00000320356.2:c.1423_1424insT	p.Arg475MetfsTer6	p.R475Mfs*6	ENST00000320356	NM_004456.4	475	aga/aTga																																																																															
EZH2	2146	MSKCC	GRCh37	7	148513878	148514900	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGGCACAGTCACAGAGCCATGAGGACAGTCTTATTTAGGCAAACCATTCTTATACTCATGCATACCAGAAAAATGTCTTTGTCTCTTCTGTGACACTGCTAGATGCTGGGGATATAACACACATCGCTGTCCCTACCCTCACATTAGGGGTAGCTGTAATTATATTCTGGTCAAGAACTGTGATGCTAAATTTCAATTCTTACTAGCTTTTAAAAGCTACTGCTATCTAACCTTAAAAGTCTACATTGGGGAAATTCTGTAACATACCTGGAGAATAATTTTCATTCAATTCCCTCTTGGGAAGAAAAAAAAATTATTTTTAGGAGATGAATAGGAGCTTAGTAATAACCAAGAATTTTCTTTGTTTGGACAACGAGTACAGTTTTATCTCTATGTTTGAAGCTCTTTTAACAACATTTTTATCGGATATCTTACCTGTCTACATGTTTTGGTCCCAATTAACCTAGCAATGGCACAGAAATTGTCATAGTAAGTGCCAATGAGGACTCTAAACATTGAGGCTTCAGCACCACTCCACTCCACATTCTCAGGAGGTTCAATATTTGGCTTCATCTTTATTGGTGTTTGACACCGAGAATTTGCTTCTACAAAACCAAATGTAAGCACTGGTCAAGAAATGATTGGAAATAATATTAAGAAGTACAATTCAGGGTGTGCTTAAGAAAAAAGCGAAAAGATGAGGACAACTCAAATCCAATCGGCAAAACACTAACCCATCGTAGTTCACATTTTCCAACAAAACTACTCACAGAACGTCAAGAATATTAAACCAAATGATCCAAATTTCATTATTCCCTACCTGAGAAAGATCGAAAAAAGAAAATGGCACAAAGAATGAGAATAAAGTGCATCATCAGCTTTCAAACAACCAAGCAGGGCAAACACCACAAGCTAGGGTACGGGTGCAGGCAGGAAACAGAAACAACACAGCTACACATTCTTGAGATAACTCTGGTCTTTATACTGAAACTAACCAACTAAGAAAATTATTCAATGCATTA	GAGGCACAGTCACAGAGCCATGAGGACAGTCTTATTTAGGCAAACCATTCTTATACTCATGCATACCAGAAAAATGTCTTTGTCTCTTCTGTGACACTGCTAGATGCTGGGGATATAACACACATCGCTGTCCCTACCCTCACATTAGGGGTAGCTGTAATTATATTCTGGTCAAGAACTGTGATGCTAAATTTCAATTCTTACTAGCTTTTAAAAGCTACTGCTATCTAACCTTAAAAGTCTACATTGGGGAAATTCTGTAACATACCTGGAGAATAATTTTCATTCAATTCCCTCTTGGGAAGAAAAAAAAATTATTTTTAGGAGATGAATAGGAGCTTAGTAATAACCAAGAATTTTCTTTGTTTGGACAACGAGTACAGTTTTATCTCTATGTTTGAAGCTCTTTTAACAACATTTTTATCGGATATCTTACCTGTCTACATGTTTTGGTCCCAATTAACCTAGCAATGGCACAGAAATTGTCATAGTAAGTGCCAATGAGGACTCTAAACATTGAGGCTTCAGCACCACTCCACTCCACATTCTCAGGAGGTTCAATATTTGGCTTCATCTTTATTGGTGTTTGACACCGAGAATTTGCTTCTACAAAACCAAATGTAAGCACTGGTCAAGAAATGATTGGAAATAATATTAAGAAGTACAATTCAGGGTGTGCTTAAGAAAAAAGCGAAAAGATGAGGACAACTCAAATCCAATCGGCAAAACACTAACCCATCGTAGTTCACATTTTCCAACAAAACTACTCACAGAACGTCAAGAATATTAAACCAAATGATCCAAATTTCATTATTCCCTACCTGAGAAAGATCGAAAAAAGAAAATGGCACAAAGAATGAGAATAAAGTGCATCATCAGCTTTCAAACAACCAAGCAGGGCAAACACCACAAGCTAGGGTACGGGTGCAGGCAGGAAACAGAAACAACACAGCTACACATTCTTGAGATAACTCTGGTCTTTATACTGAAACTAACCAACTAAGAAAATTATTCAATGCATTA	-			P-0069707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	67	266	0	ENST00000320356.2:c.1240+70_1411-7del		p.X414_splice	ENST00000320356	NM_004456.4	414																																																																																
CARD11	84433	MSKCC	GRCh37	7	2977584	2977584	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746318779		P-0069708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	43	218	0	ENST00000396946.4:c.1100C>T	p.Thr367Met	p.T367M	ENST00000396946	NM_032415.4	367	aCg/aTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600009	10600009	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	45	358	0	ENST00000171111.5:c.1567G>T	p.Gly523Trp	p.G523W	ENST00000171111	NM_203500.1	523	Ggg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0069708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	44	166	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748605	40748605	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	22	221	0	ENST00000373198.4:c.2911C>A	p.His971Asn	p.H971N	ENST00000373198	NM_133170.3	971	Cat/Aat																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240343	41240343	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	14	235	0	ENST00000379561.5:c.7G>T	p.Glu3Ter	p.E3*	ENST00000379561	NM_002015.3	3	Gag/Tag																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450292	50450292	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	32	316	0	ENST00000331340.3:c.476A>C	p.Asn159Thr	p.N159T	ENST00000331340	NM_006060.4	159	aAc/aCc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288759	15288759	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	27	295	0	ENST00000263388.2:c.3980del	p.Phe1327SerfsTer93	p.F1327Sfs*93	ENST00000263388	NM_000435.2	1327	tTc/tc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23619240	23619240	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	37	255	0	ENST00000261584.4:c.3295A>G	p.Thr1099Ala	p.T1099A	ENST00000261584	NM_024675.3	1099	Acg/Gcg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8317881	8317881	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	22	224	0	ENST00000356435.5:c.5732C>G	p.Ala1911Gly	p.A1911G	ENST00000356435		1911	gCa/gGa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022739	12022739	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	55	419	0	ENST00000396373.4:c.845G>C	p.Arg282Pro	p.R282P	ENST00000396373	NM_001987.4	282	cGg/cCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0069709-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	64	229	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851843	134851843	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1305200941		P-0069709-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	74	467	0	ENST00000398015.3:c.1249C>T	p.Pro417Ser	p.P417S	ENST00000398015	NM_004441.4	417	Ccc/Tcc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155721	56155722	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0069709-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	97	375	0	ENST00000399503.3:c.816_817del	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	271	agAAaa/agaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189387	56189387	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069709-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	139	363	0	ENST00000399503.3:c.4421del	p.Pro1474LeufsTer16	p.P1474Lfs*16	ENST00000399503	NM_005921.1	1473	atC/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069709-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	84	255	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155621	56155622	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069709-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	142	292	0	ENST00000399503.3:c.715dup	p.Ser239LysfsTer62	p.S239Kfs*62	ENST00000399503	NM_005921.1	238	gca/gcAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882019		P-0069710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	157	425	0	ENST00000269305.4:c.455dup	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0069710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	85	236	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061248	38061248	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069715-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	266	380	0	ENST00000250448.2:c.741C>G	p.His247Gln	p.H247Q	ENST00000250448	NM_004496.3	247	caC/caG																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0069715-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	237	443	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	8	315	0	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	49	476	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221720	55221720	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372202099		P-0069719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	40	445	0	ENST00000275493.2:c.764G>A	p.Arg255Gln	p.R255Q	ENST00000275493	NM_005228.3	255	cGa/cAa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066912	30066912	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752897300		P-0069719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	64	273	0	ENST00000331968.5:c.2219G>A	p.Arg740Gln	p.R740Q	ENST00000331968	NM_002742.2	740	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913240		P-0069719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	45	298	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410075	63410075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	29	535	0	ENST00000330258.3:c.3092G>T	p.Gly1031Val	p.G1031V	ENST00000330258	NM_152424.3	1031	gGc/gTc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439930	56439930	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	47	351	0	ENST00000407977.2:c.662G>T	p.Arg221Leu	p.R221L	ENST00000407977		221	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574035	7574035	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0069724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	119	307	0	ENST00000269305.4:c.994-2A>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
SETD2	29072	MSKCC	GRCh37	3	47129699	47129699	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	69	372	0	ENST00000409792.3:c.5181G>T	p.Glu1727Asp	p.E1727D	ENST00000409792	NM_014159.6	1727	gaG/gaT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55223573	55223573	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs552062864		P-0069724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	47	442	0	ENST00000275493.2:c.940G>A	p.Asp314Asn	p.D314N	ENST00000275493	NM_005228.3	314	Gac/Aac																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231825	36231825	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1429953108		P-0069727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1036	182	501	0	ENST00000300305.3:c.559G>A	p.Ala187Thr	p.A187T	ENST00000300305		187	Gcc/Acc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949768	151949768	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	190	350	0	ENST00000262189.6:c.1332del	p.Ser445LeufsTer10	p.S445Lfs*10	ENST00000262189	NM_170606.2	444	cgG/cg																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519912		P-0069729-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	111	314	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0069745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	219	329	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
CBFB	865	MSKCC	GRCh37	16	67070541	67070541	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0069745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	387	214	0	ENST00000412916.2:c.166-1G>T		p.X56_splice	ENST00000412916		56																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48604658	48604658	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	99	292	0	ENST00000342988.3:c.1480G>T	p.Asp494Tyr	p.D494Y	ENST00000342988	NM_005359.5	494	Gac/Tac																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437299	110437299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	24	152	0	ENST00000375856.3:c.1102G>A	p.Asp368Asn	p.D368N	ENST00000375856	NM_003749.2	368	Gac/Aac																																																																															
RB1	5925	MSKCC	GRCh37	13	48955402	48955436	+	frameshift_variant	Frame_Shift_Del	DEL	TGATTCTGGAACAGATTTGTCTTTCCCATGGATTC	TGATTCTGGAACAGATTTGTCTTTCCCATGGATTC	-			P-0069745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	166	205	0	ENST00000267163.4:c.1521_1555del	p.Asp507GlufsTer4	p.D507Efs*4	ENST00000267163	NM_000321.2	506	ctTGATTCTGGAACAGATTTGTCTTTCCCATGGATTCtg/cttg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32928917	32929016	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGGGTCTGCAACAAAGGCATATTCCTAAATATTTATATGTGTACTAGTCAATAAACTTATATATTTTCTCCCCATTGCAGCACAACTAAGGAACGTCAA	GAGGGTCTGCAACAAAGGCATATTCCTAAATATTTATATGTGTACTAGTCAATAAACTTATATATTTTCTCCCCATTGCAGCACAACTAAGGAACGTCAA	-			P-0069745-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			89	74	106	0	ENST00000380152.3:c.7008-78_7029del		p.X2336_splice	ENST00000380152		2336																																																																																
GATA3	2625	MSKCC	GRCh37	10	8097761	8097761	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	183	578	0	ENST00000346208.3:c.143A>T	p.Asp48Val	p.D48V	ENST00000346208		48	gAt/gTt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23649420	23649420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			779	112	331	0	ENST00000261584.4:c.79G>A	p.Glu27Lys	p.E27K	ENST00000261584	NM_024675.3	27	Gaa/Aaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115671	8115703	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAAAAAAAAAAAAAATTGATCTTTGTTTAGAT	AAAAAAAAAAAAAAAATTGATCTTTGTTTAGAT	TC			P-0069750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	130	435	4	ENST00000346208.3:c.1048-31_1049delinsTC		p.X350_splice	ENST00000346208		350																																																																																
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0069760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	86	339	0	ENST00000346208.3:c.1003dup	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
ESR1	2099	MSKCC	GRCh37	6	152420094	152420094	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138891155		P-0069760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			780	42	253	0	ENST00000206249.3:c.1781C>T	p.Thr594Met	p.T594M	ENST00000206249	NM_000125.3	594	aCg/aTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76845409	76845409	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0069760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	23	259	0	ENST00000373344.5:c.6112C>T	p.Leu2038Phe	p.L2038F	ENST00000373344	NM_000489.3	2038	Ctt/Ttt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44733198	44733198	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	27	118	0	ENST00000377967.4:c.190G>T	p.Glu64Ter	p.E64*	ENST00000377967	NM_021140.2	64	Gaa/Taa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907465	32907465	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs397507278		P-0069770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	134	240	0	ENST00000380152.3:c.1850C>A	p.Ser617Ter	p.S617*	ENST00000380152		617	tCa/tAa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs879499034		P-0069773-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	77	443	0	ENST00000250448.2:c.798C>A	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttA																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15975503	15975504	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069773-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	31	257	0	ENST00000268712.3:c.3850dup	p.Ser1284PhefsTer2	p.S1284Ffs*2	ENST00000268712	NM_006311.3	1284	tct/tTct																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44820605	44820605	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069773-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	31	144	0	ENST00000377967.4:c.302A>C	p.His101Pro	p.H101P	ENST00000377967	NM_021140.2	101	cAc/cCc																																																																															
EED	8726	MSKCC	GRCh37	11	85956297	85956297	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs751356706		P-0069773-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	45	281	0	ENST00000263360.6:c.26C>A	p.Ala9Glu	p.A9E	ENST00000263360	NM_003797.3	9	gCg/gAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242486	+	inframe_deletion	In_Frame_Del	DEL	TTAAGAGAAGCAACATCT	TTAAGAGAAGCAACATCT	-	rs121913440		P-0069776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	74	173	0	ENST00000275493.2:c.2239_2256del	p.Leu747_Ser752del	p.L747_S752del	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAACATCT/-																																																																															
MED12	9968	MSKCC	GRCh37	X	70357660	70357660	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	97	171	0	ENST00000374080.3:c.5911C>T	p.Gln1971Ter	p.Q1971*	ENST00000374080		1971	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828893	72828905	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGGATGAACT	GGGTGGATGAACT	-			P-0069777-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	182	342	0	ENST00000268489.5:c.7676_7688del	p.Gln2559ProfsTer49	p.Q2559Pfs*49	ENST00000268489	NM_006885.3	2559	cAGTTCATCCACCCc/cc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905960	50905960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	213	465	0	ENST00000440232.2:c.932G>T	p.Arg311Leu	p.R311L	ENST00000440232	NM_002691.3	311	cGc/cTc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098956	178098956	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	128	303	0	ENST00000397062.3:c.89T>C	p.Leu30Pro	p.L30P	ENST00000397062	NM_006164.4	30	cTt/cCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0069792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	177	207	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
BCL2	596	MSKCC	GRCh37	18	60795887	60795887	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	368	390	0	ENST00000333681.4:c.691A>G	p.Thr231Ala	p.T231A	ENST00000333681		231	Acc/Gcc																																																																															
BRAF	673	MSKCC	GRCh37	7	140507842	140507842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	260	218	0	ENST00000288602.6:c.629G>T	p.Trp210Leu	p.W210L	ENST00000288602	NM_004333.4	210	tGg/tTg																																																																															
POT1	25913	MSKCC	GRCh37	7	124464018	124464018	+	stop_lost	Nonstop_Mutation	SNP	A	A	C			P-0069792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	193	224	0	ENST00000357628.3:c.1903T>G	p.Ter635GluextTer6	p.*635Eext*6	ENST00000357628	NM_015450.2	635	Taa/Gaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573658	48573658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	351	320	0	ENST00000342988.3:c.242G>A	p.Arg81Lys	p.R81K	ENST00000342988	NM_005359.5	81	aGg/aAg																																																																															
HGF	3082	MSKCC	GRCh37	7	81399242	81399243	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0069792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	261	396	0	ENST00000222390.5:c.45_46delinsAA	p.Leu16Ile	p.L16I	ENST00000222390	NM_000601.4	15	gtCCtc/gtAAtc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2977650	2977650	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	205	316	0	ENST00000396946.4:c.1034A>T	p.Glu345Val	p.E345V	ENST00000396946	NM_032415.4	345	gAg/gTg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156830851	156830851	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	402	385	0	ENST00000524377.1:c.125C>A	p.Pro42His	p.P42H	ENST00000524377	NM_002529.3	42	cCc/cAc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670606	30670606	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	170	364	0	ENST00000376406.3:c.5914G>T	p.Asp1972Tyr	p.D1972Y	ENST00000376406	NM_014641.2	1972	Gac/Tac																																																																															
KDR	3791	MSKCC	GRCh37	4	55973950	55973950	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	149	352	0	ENST00000263923.4:c.1366A>G	p.Ile456Val	p.I456V	ENST00000263923	NM_002253.2	456	Atc/Gtc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965351	25965351	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	276	405	0	ENST00000435504.4:c.3855C>G	p.Ser1285Arg	p.S1285R	ENST00000435504		1285	agC/agG																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56174928	56174928	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0069792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	59	288	0	ENST00000399503.3:c.2087G>A	p.Ser696Asn	p.S696N	ENST00000399503	NM_005921.1	696	aGc/aAc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755732	57755732	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	147	374	0	ENST00000274289.3:c.55G>T	p.Glu19Ter	p.E19*	ENST00000274289	NM_006622.3	19	Gag/Tag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52702550	52702550	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1469677552		P-0069792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	139	235	0	ENST00000394830.3:c.348C>G	p.Phe116Leu	p.F116L	ENST00000394830	NM_018313.4	116	ttC/ttG																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967185	134967185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	168	407	0	ENST00000398015.3:c.2524C>T	p.Arg842Trp	p.R842W	ENST00000398015	NM_004441.4	842	Cgg/Tgg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627338	37627339	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0069798-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	42	405	0	ENST00000447079.4:c.1253_1254del	p.Lys418ArgfsTer11	p.K418Rfs*11	ENST00000447079	NM_015083.1	418	aAG/a																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061207	38061243	+	frameshift_variant	Frame_Shift_Del	DEL	CGCAAGTAGCAGCCGTTCTCGAACATGTTGCCGGAGT	CGCAAGTAGCAGCCGTTCTCGAACATGTTGCCGGAGT	-			P-0069798-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	79	351	1	ENST00000250448.2:c.746_782del	p.Asp249AlafsTer60	p.D249Afs*60	ENST00000250448	NM_004496.3	249	gACTCCGGCAACATGTTCGAGAACGGCTGCTACTTGCGc/gc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456758	32456758	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs967658170		P-0069803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	65	349	0	ENST00000332351.3:c.134C>A	p.Ala45Asp	p.A45D	ENST00000332351	NM_024426.4	45	gCc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0069803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	82	229	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739341	46739341	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372456315		P-0069803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	46	370	0	ENST00000371975.4:c.1532G>A	p.Arg511His	p.R511H	ENST00000371975	NM_003579.3	511	cGt/cAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133225927	133225927	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779464847		P-0069803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	80	358	0	ENST00000320574.5:c.3970C>T	p.Arg1324Cys	p.R1324C	ENST00000320574	NM_006231.2	1324	Cgc/Tgc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295550	1295550	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1008998129		P-0069803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	328	506	0				ENST00000310581	NM_198253.2																																																																																	
TERT	7015	MSKCC	GRCh37	5	1295566	1295566	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0069803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	340	507	0				ENST00000310581	NM_198253.2																																																																																	
TERT	7015	MSKCC	GRCh37	5	1295640	1295640	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0069803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	299	495	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0069804-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	363	364	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42794857	42794857	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069804-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	292	386	0	ENST00000575354.2:c.1937G>C	p.Arg646Thr	p.R646T	ENST00000575354	NM_015125.3	646	aGa/aCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0069804-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	388	344	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949215	71949255	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCAGGTGGGGGAGGGGCTGGCCCCGGGGGCGGAGCTGGGG	CTCAGGTGGGGGAGGGGCTGGCCCCGGGGGCGGAGCTGGGG	-			P-0069804-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1039	68	487	0	ENST00000298229.2:c.3683_3686+37del		p.X1228_splice	ENST00000298229	NM_001567.3	1228																																																																																
TOP1	7150	MSKCC	GRCh37	20	39725863	39725863	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069804-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	127	277	0	ENST00000361337.2:c.734A>T	p.Lys245Ile	p.K245I	ENST00000361337	NM_003286.2	245	aAa/aTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874110	151874161	+	frameshift_variant	Frame_Shift_Del	DEL	GTTTATCAGAGAGAACCAGAGTTTTGTTTTCTTGTTCCTTTTTTTTTGGTTC	GTTTATCAGAGAGAACCAGAGTTTTGTTTTCTTGTTCCTTTTTTTTTGGTTC	-			P-0069804-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			688	235	339	0	ENST00000262189.6:c.8377_8428del	p.Glu2793IlefsTer13	p.E2793Ifs*13	ENST00000262189	NM_170606.2	2793	GAACCAAAAAAAAAGGAACAAGAAAACAAAACTCTGGTTCTCTCTGATAAACat/at																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0069806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	31	335	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916935	178916935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	30	280	0	ENST00000263967.3:c.322C>T	p.Arg108Cys	p.R108C	ENST00000263967	NM_006218.2	108	Cgt/Tgt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155650	56155650	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	71	330	1	ENST00000399503.3:c.742C>T	p.Arg248Ter	p.R248*	ENST00000399503	NM_005921.1	248	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0069823-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	123	252	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591912	48591929	+	inframe_deletion	In_Frame_Del	DEL	GGAGATCGCTTTTGTTTG	GGAGATCGCTTTTGTTTG	-			P-0069823-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	110	322	0	ENST00000342988.3:c.1077_1094del	p.Asp360_Gly365del	p.D360_G365del	ENST00000342988	NM_005359.5	359	GGAGATCGCTTTTGTTTG/-																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209357	98209357	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748812637		P-0069828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	25	454	0	ENST00000331920.6:c.4181G>A	p.Arg1394Gln	p.R1394Q	ENST00000331920	NM_000264.3	1394	cGa/cAa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964202	28964202	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	66	325	0	ENST00000282397.4:c.1700C>A	p.Pro567Gln	p.P567Q	ENST00000282397	NM_002019.4	567	cCg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0069828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	123	320	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
RRAS	6237	MSKCC	GRCh37	19	50139058	50139060	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0069828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	51	331	0	ENST00000246792.3:c.503_505del	p.Tyr168del	p.Y168del	ENST00000246792	NM_006270.3	168	tACTtt/ttt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52668807	52668807	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	110	337	0	ENST00000394830.3:c.1112C>A	p.Ser371Ter	p.S371*	ENST00000394830	NM_018313.4	371	tCa/tAa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99442705	99442705	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0069828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	23	339	0	ENST00000268035.6:c.1103-1G>C		p.X368_splice	ENST00000268035	NM_000875.3	368																																																																																
WT1	7490	MSKCC	GRCh37	11	32456537	32456538	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0069828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	29	297	0	ENST00000332351.3:c.354_355insA	p.Leu119IlefsTer80	p.L119Ifs*80	ENST00000332351	NM_024426.4	118	-/A																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467880	66467880	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	76	379	0	ENST00000273854.3:c.389T>A	p.Leu130His	p.L130H	ENST00000273854	NM_004439.5	130	cTc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069836-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			55	11	250	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069836-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			41	10	343	0	ENST00000269305.4:c.380C>A	p.Ser127Tyr	p.S127Y	ENST00000269305	NM_001126112.2	127	tCc/tAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573573	48573573	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069836-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	11	349	0	ENST00000342988.3:c.157G>T	p.Glu53Ter	p.E53*	ENST00000342988	NM_005359.5	53	Gaa/Taa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639366	3639366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766448056		P-0069837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	11	397	0	ENST00000294008.3:c.4273G>A	p.Asp1425Asn	p.D1425N	ENST00000294008	NM_032444.2	1425	Gac/Aac																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187279	38187279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	10	329	0	ENST00000317025.8:c.1198G>A	p.Glu400Lys	p.E400K	ENST00000317025	NM_023034.1	400	Gaa/Aaa																																																																															
MED12	9968	MSKCC	GRCh37	X	70349243	70349243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	14	176	0	ENST00000374080.3:c.3655G>T	p.Ala1219Ser	p.A1219S	ENST00000374080		1219	Gcc/Tcc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115284244	115284311	+	splice_acceptor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	AGAGGGATGAGGATCTGATGACACAGTAAAAACGTTCTCCATCTCAAACAGCTGTTATAACATAGCAT	AGAGGGATGAGGATCTGATGACACAGTAAAAACGTTCTCCATCTCAAACAGCTGTTATAACATAGCAT	-			P-0069837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	40	302	0	ENST00000438362.2:c.-9-17_42del		p.X3_splice	ENST00000438362	NM_001242891.1	3																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153244136	153244136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069846-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	266	656	0	ENST00000281708.4:c.2021G>A	p.Arg674Gln	p.R674Q	ENST00000281708	NM_033632.3	674	cGg/cAg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562345	21562345	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1204055851		P-0069846-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	36	574	1	ENST00000382592.4:c.1574G>A	p.Arg525His	p.R525H	ENST00000382592	NM_014572.2	525	cGc/cAc																																																																															
MPL	4352	MSKCC	GRCh37	1	43805197	43805197	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069846-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			718	41	586	0	ENST00000372470.3:c.647T>G	p.Met216Arg	p.M216R	ENST00000372470	NM_005373.2	216	aTg/aGg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0069848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	84	309	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971122	21971123	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0069848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	148	483	0	ENST00000304494.5:c.235dup	p.Thr79AsnfsTer41	p.T79Nfs*41	ENST00000304494	NM_000077.4	79	acc/aAcc																																																																															
ATRX	546	MSKCC	GRCh37	X	76855029	76855029	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	8	394	0	ENST00000373344.5:c.5807A>G	p.Lys1936Arg	p.K1936R	ENST00000373344	NM_000489.3	1936	aAg/aGg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430035	78430035	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	73	376	0	ENST00000370768.2:c.844A>C	p.Ile282Leu	p.I282L	ENST00000370768	NM_003902.3	282	Att/Ctt																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0069854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			860	50	313	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578450	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0069854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	17	418	0	ENST00000269305.4:c.480_481delinsTT	p.Met160_Ala161delinsIleSer	p.M160_A161delinsIS	ENST00000269305	NM_001126112.2	160	atGGcc/atTTcc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0069859-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	72	239	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069859-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	108	342	0	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47058696	47058696	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069859-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	71	319	0	ENST00000409792.3:c.7582G>T	p.Glu2528Ter	p.E2528*	ENST00000409792	NM_014159.6	2528	Gag/Tag																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792747	33792748	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTGCGA			P-0069859-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	38	241	0	ENST00000498907.2:c.568_573dup	p.Ser190_His191dup	p.S190_H191dup	ENST00000498907	NM_004364.3	190	-/TCGCAC																																																																															
ALK	238	MSKCC	GRCh37	2	30143305	30143305	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1187464179		P-0069865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	15	319	0	ENST00000389048.3:c.221C>T	p.Pro74Leu	p.P74L	ENST00000389048	NM_004304.4	74	cCa/cTa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0069871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	85	304	0				ENST00000310581	NM_198253.2																																																																																	
BRD4	23476	MSKCC	GRCh37	19	15355186	15355186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	52	331	0	ENST00000263377.2:c.2437C>T	p.Pro813Ser	p.P813S	ENST00000263377	NM_058243.2	813	Cca/Tca																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044925	47044925	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	91	367	0	ENST00000329236.7:c.2017G>T	p.Glu673Ter	p.E673*	ENST00000329236	NM_001204466.1	673	Gag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880997	37880998	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TAT			P-0069871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	188	366	0	ENST00000269571.5:c.2326_2327insTAT	p.Gly776delinsValCys	p.G776delinsVC	ENST00000269571		776	ggt/gTATgt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902145	50902145	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs760884573		P-0069871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	76	279	0	ENST00000440232.2:c.37G>T	p.Val13Leu	p.V13L	ENST00000440232	NM_002691.3	13	Gtg/Ttg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193205436	193205436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	86	271	0	ENST00000367435.3:c.1367G>A	p.Gly456Asp	p.G456D	ENST00000367435	NM_024529.4	456	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	40	381	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956723	68956723	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs750933833		P-0069905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	51	343	0	ENST00000288368.4:c.841C>T	p.Arg281Trp	p.R281W	ENST00000288368	NM_024870.2	281	Cgg/Tgg																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983272	149983272	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	90	531	0	ENST00000253339.5:c.2986T>A	p.Leu996Ile	p.L996I	ENST00000253339		996	Tta/Ata																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0069907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	24	496	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0069907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	18	328	0	ENST00000412916.2:c.165+1G>T		p.X55_splice	ENST00000412916		55																																																																																
CDH1	999	MSKCC	GRCh37	16	68846167	68846167	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs876660771		P-0069907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	23	357	2	ENST00000261769.5:c.1137+1G>A		p.X379_splice	ENST00000261769	NM_004360.3	379																																																																																
JAK1	3716	MSKCC	GRCh37	1	65301120	65301120	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	32	283	0	ENST00000342505.4:c.3328G>T	p.Glu1110Ter	p.E1110*	ENST00000342505	NM_002227.2	1110	Gaa/Taa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43699631	43699631	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0069908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	152	458	0	ENST00000382044.4:c.5884del	p.Ile1962LeufsTer44	p.I1962Lfs*44	ENST00000382044	NM_001141980.1	1962	Att/tt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16265363	16265363	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	111	439	0	ENST00000375759.3:c.10855T>C	p.Ser3619Pro	p.S3619P	ENST00000375759	NM_015001.2	3619	Tcc/Ccc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912580		P-0069909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	86	367	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023685	27023685	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	87	426	0	ENST00000324856.7:c.791C>A	p.Ser264Ter	p.S264*	ENST00000324856	NM_006015.4	264	tCg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0069909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	44	303	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038900	12038900	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	78	414	2	ENST00000396373.4:c.1193T>A	p.Leu398Gln	p.L398Q	ENST00000396373	NM_001987.4	398	cTg/cAg																																																																															
FYN	2534	MSKCC	GRCh37	6	111982963	111982963	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0069909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	91	453	0	ENST00000368678.4:c.1584C>G	p.Tyr528Ter	p.Y528*	ENST00000368678		528	taC/taG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	95	616	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242483	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACA	AATTAAGAGAAGCAACA	CT			P-0069914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	40	392	0	ENST00000275493.2:c.2237_2253delinsCT	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACA/gCT																																																																															
POLE	5426	MSKCC	GRCh37	12	133220130	133220130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	61	614	0	ENST00000320574.5:c.4307G>T	p.Arg1436Leu	p.R1436L	ENST00000320574	NM_006231.2	1436	cGg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438305	49438305	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0069914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	47	412	0	ENST00000301067.7:c.4964G>A	p.Gly1655Asp	p.G1655D	ENST00000301067	NM_003482.3	1655	gGt/gAt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245322	53245322	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	40	506	0	ENST00000375401.3:c.715T>G	p.Tyr239Asp	p.Y239D	ENST00000375401	NM_004187.3	239	Tat/Gat																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0069917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	195	461	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0069917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	136	366	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38282176	38282176	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747978107		P-0069917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	125	628	1	ENST00000425967.3:c.880G>A	p.Ala294Thr	p.A294T	ENST00000425967	NM_001174067.1	294	Gcc/Acc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52623182	52623182	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	80	505	0	ENST00000394830.3:c.2869A>C	p.Met957Leu	p.M957L	ENST00000394830	NM_018313.4	957	Atg/Ctg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31435919	31435951	+	inframe_deletion	In_Frame_Del	DEL	AGGTTGCTAATCCTCCTTCTTCCAGACTAGGAA	AGGTTGCTAATCCTCCTTCTTCCAGACTAGGAA	-			P-0069917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	47	429	0	ENST00000344624.3:c.2963_2995del	p.Phe988_Thr998del	p.F988_T998del	ENST00000344624		988	tTTCCTAGTCTGGAAGAAGGAGGATTAGCAACCTat/tat																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192624	138192624	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1363086770		P-0069917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	177	473	0	ENST00000237289.4:c.260G>A	p.Arg87Gln	p.R87Q	ENST00000237289	NM_001270507.1	87	cGa/cAa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080282	5080282	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	89	431	0	ENST00000381652.3:c.2185A>G	p.Asn729Asp	p.N729D	ENST00000381652	NM_004972.3	729	Aat/Gat																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966695	36966695	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769624843		P-0069917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	85	446	0	ENST00000358127.4:c.631G>A	p.Gly211Ser	p.G211S	ENST00000358127	NM_001280556.1	211	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0069918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	175	523	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0069918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	135	466	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710706	114710706	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0069918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	49	508	0	ENST00000543371.1:c.189+2T>C		p.X63_splice	ENST00000543371	NM_001198531.1	63																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0069918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	92	409	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006084	22006084	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	30	692	0	ENST00000276925.6:c.319G>C	p.Asp107His	p.D107H	ENST00000276925	NM_004936.3	107	Gac/Cac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860812	151860812	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	145	750	0	ENST00000262189.6:c.9850G>T	p.Val3284Phe	p.V3284F	ENST00000262189	NM_170606.2	3284	Gtc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0069919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	116	540	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
REL	5966	MSKCC	GRCh37	2	61144132	61144132	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1253056300		P-0069919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	32	342	0	ENST00000295025.8:c.515C>T	p.Ser172Leu	p.S172L	ENST00000295025	NM_002908.2	172	tCg/tTg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530029	63530029	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0069919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	36	333	0	ENST00000307078.5:c.2405+1G>C		p.X802_splice	ENST00000307078	NM_004655.3	802																																																																																
NTRK3	4916	MSKCC	GRCh37	15	88483869	88483869	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	35	417	0	ENST00000360948.2:c.1701G>C	p.Met567Ile	p.M567I	ENST00000360948	NM_001012338.2	567	atG/atC																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374074	118374074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	71	461	0	ENST00000534358.1:c.7467G>C	p.Lys2489Asn	p.K2489N	ENST00000534358	NM_005933.3	2489	aaG/aaC																																																																															
IRF4	3662	MSKCC	GRCh37	6	397205	397205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	80	569	2	ENST00000380956.4:c.590C>A	p.Thr197Lys	p.T197K	ENST00000380956	NM_001195286.1	197	aCg/aAg																																																																															
KIT	3815	MSKCC	GRCh37	4	55604696	55604696	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069919-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	74	411	0	ENST00000288135.5:c.2904del	p.Gln968HisfsTer29	p.Q968Hfs*29	ENST00000288135	NM_000222.2	968	caG/ca																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0069923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	161	500	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577098	7577098	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	100	517	0	ENST00000269305.4:c.840A>T	p.Arg280Ser	p.R280S	ENST00000269305	NM_001126112.2	280	agA/agT																																																																															
RASA1	5921	MSKCC	GRCh37	5	86670121	86670121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	46	307	0	ENST00000274376.6:c.1918G>A	p.Glu640Lys	p.E640K	ENST00000274376	NM_002890.2	640	Gaa/Aaa																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230461084	230461084	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	38	380	0	ENST00000525115.1:c.1144A>G	p.Ile382Val	p.I382V	ENST00000525115		382	Atc/Gtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0069928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	117	313	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112511	115112511	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	114	495	0	ENST00000257566.3:c.1229C>A	p.Pro410His	p.P410H	ENST00000257566	NM_016569.3	410	cCc/cAc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729163	66729163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397516792		P-0069928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	137	563	0	ENST00000307102.5:c.371C>T	p.Pro124Leu	p.P124L	ENST00000307102	NM_002755.3	124	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0069928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	98	465	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551620	150551620	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0069928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	128	465	0	ENST00000369026.2:c.387C>G	p.Tyr129Ter	p.Y129*	ENST00000369026	NM_021960.4	129	taC/taG																																																																															
RB1	5925	MSKCC	GRCh37	13	48934201	48934201	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	61	372	0	ENST00000267163.4:c.656T>A	p.Met219Lys	p.M219K	ENST00000267163	NM_000321.2	219	aTg/aAg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532438	63532438	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0069928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	230	440	0	ENST00000307078.5:c.2141G>T	p.Arg714Leu	p.R714L	ENST00000307078	NM_004655.3	714	cGg/cTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141427	11141427	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	119	447	0	ENST00000344626.4:c.3404G>T	p.Arg1135Leu	p.R1135L	ENST00000344626	NM_003072.3	1135	cGg/cTg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719838	61719838	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	45	429	0	ENST00000401558.2:c.1430C>A	p.Thr477Lys	p.T477K	ENST00000401558	NM_003400.3	477	aCa/aAa																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289672	33289673	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0069928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	56	403	0	ENST00000374542.5:c.30_31delinsTT	p.Asp11Tyr	p.D11Y	ENST00000374542	NM_001141970.1	10	ctGGat/ctTTat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0069929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	263	482	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89881015	89881015	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs753727231		P-0069929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	136	354	0	ENST00000389301.3:c.196G>T	p.Gly66Cys	p.G66C	ENST00000389301	NM_000135.2	66	Ggt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602286	10602286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	259	473	0	ENST00000171111.5:c.1292C>T	p.Ser431Phe	p.S431F	ENST00000171111	NM_203500.1	431	tCc/tTc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803117	1803117	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1330260382		P-0069929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	85	430	0	ENST00000260795.2:c.469G>A	p.Glu157Lys	p.E157K	ENST00000260795		157	Gag/Aag																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308408	30308408	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	59	372	0	ENST00000262643.3:c.422del	p.Gln141ArgfsTer12	p.Q141Rfs*12	ENST00000262643	NM_001238.2	141	cAg/cg																																																																															
ATM	472	MSKCC	GRCh37	11	108196109	108196109	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	78	343	0	ENST00000278616.4:c.6645T>A	p.Ser2215Arg	p.S2215R	ENST00000278616	NM_000051.3	2215	agT/agA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628917	187628917	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	280	481	0	ENST00000441802.2:c.2065C>T	p.Gln689Ter	p.Q689*	ENST00000441802	NM_005245.3	689	Cag/Tag																																																																															
SESN3	143686	MSKCC	GRCh37	11	94917733	94917733	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	78	384	0	ENST00000536441.1:c.788A>T	p.Glu263Val	p.E263V	ENST00000536441	NM_144665.3	263	gAg/gTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69136816	69136816	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200020354		P-0069929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	83	324	0	ENST00000288368.4:c.4730C>T	p.Ala1577Val	p.A1577V	ENST00000288368	NM_024870.2	1577	gCg/gTg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2047324	2047324	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			67	77	173	0	ENST00000349721.2:c.886C>T	p.Gln296Ter	p.Q296*	ENST00000349721	NM_003070.3	296	Cag/Tag																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664485	138664485	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0069929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	80	285	0	ENST00000330315.3:c.1080C>G	p.Tyr360Ter	p.Y360*	ENST00000330315	NM_023067.3	360	taC/taG																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10252829	10252829	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	254	489	0	ENST00000340748.4:c.3136G>T	p.Asp1046Tyr	p.D1046Y	ENST00000340748		1046	Gac/Tac																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308375	30308375	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	72	412	0	ENST00000262643.3:c.389A>T	p.Asp130Val	p.D130V	ENST00000262643	NM_001238.2	130	gAt/gTt																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750546	41750546	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	225	392	0	ENST00000226382.2:c.82T>A	p.Ser28Thr	p.S28T	ENST00000226382	NM_003924.3	28	Tca/Aca																																																																															
NBN	4683	MSKCC	GRCh37	8	90960111	90960111	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	90	281	0	ENST00000265433.3:c.1855G>C	p.Glu619Gln	p.E619Q	ENST00000265433	NM_002485.4	619	Gaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0069946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	248	575	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581157	48581157	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0069946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	31	350	0	ENST00000342988.3:c.461C>G	p.Ser154Ter	p.S154*	ENST00000342988	NM_005359.5	154	tCa/tGa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591901	48591901	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	14	488	0	ENST00000342988.3:c.1064A>T	p.Asp355Val	p.D355V	ENST00000342988	NM_005359.5	355	gAc/gTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298095	15298095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	221	457	0	ENST00000263388.2:c.1661G>A	p.Cys554Tyr	p.C554Y	ENST00000263388	NM_000435.2	554	tGc/tAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437984	49437984	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0069946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	221	537	0	ENST00000301067.7:c.5187G>C	p.Glu1729Asp	p.E1729D	ENST00000301067	NM_003482.3	1729	gaG/gaC																																																																															
ABL1	25	MSKCC	GRCh37	9	133748334	133748334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	422	428	1	ENST00000318560.5:c.995G>T	p.Arg332Leu	p.R332L	ENST00000318560	NM_005157.4	332	cGg/cTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29508804	29508804	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0069946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			59	17	309	0	ENST00000358273.4:c.730+1G>A		p.X244_splice	ENST00000358273	NM_001042492.2	244																																																																																
STK19	8859	MSKCC	GRCh37	6	31940398	31940398	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs1354982516		P-0069946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			951	231	573	0	ENST00000375331.2:c.431G>T	p.Gly144Val	p.G144V	ENST00000375331	NM_004197.1	144	gGg/gTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523495	106523495	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0069946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	172	347	0	ENST00000359195.3:c.2647A>T	p.Lys883Ter	p.K883*	ENST00000359195	NM_002649.2	883	Aaa/Taa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653835	89653835	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	177	307	0	ENST00000371953.3:c.133del	p.Val45TyrfsTer9	p.V45Yfs*9	ENST00000371953	NM_000314.4	45	Gta/ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578484	7578485	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	486	581	0	ENST00000269305.4:c.445dup	p.Ser149PhefsTer32	p.S149Ffs*32	ENST00000269305	NM_001126112.2	149	tcc/tTcc																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123480505	123480505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	126	411	0	ENST00000371139.4:c.13G>T	p.Ala5Ser	p.A5S	ENST00000371139	NM_001114937.2	5	Gct/Tct																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032251	26032251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	135	536	0	ENST00000244661.2:c.38G>A	p.Gly13Asp	p.G13D	ENST00000244661	NM_003537.3	13	gGc/gAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351297	89351297	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	144	540	0	ENST00000301030.4:c.1653G>A	p.Trp551Ter	p.W551*	ENST00000301030	NM_001256183.1	551	tgG/tgA																																																																															
GATA1	2623	MSKCC	GRCh37	X	48651695	48651695	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	114	518	0	ENST00000376670.3:c.861G>C	p.Lys287Asn	p.K287N	ENST00000376670	NM_002049.3	287	aaG/aaC																																																																															
NF1	4763	MSKCC	GRCh37	17	29541468	29541468	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0069956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			50	106	72	0	ENST00000358273.4:c.1393-1G>A		p.X465_splice	ENST00000358273	NM_001042492.2	465																																																																																
TP53	7157	MSKCC	GRCh37	17	7579534	7579538	+	frameshift_variant	Frame_Shift_Del	DEL	TTCAA	TTCAA	-			P-0069956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	498	463	0	ENST00000269305.4:c.149_153del	p.Ile50ThrfsTer5	p.I50Tfs*5	ENST00000269305	NM_001126112.2	50	aTTGAA/a																																																																															
APC	324	MSKCC	GRCh37	5	112175366	112175366	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs863225352		P-0069959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	94	354	0	ENST00000257430.4:c.4075A>T	p.Lys1359Ter	p.K1359*	ENST00000257430	NM_000038.5	1359	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578384	7578384	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	85	506	0	ENST00000269305.4:c.546C>A	p.Cys182Ter	p.C182*	ENST00000269305	NM_001126112.2	182	tgC/tgA																																																																															
FYN	2534	MSKCC	GRCh37	6	112041022	112041022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376255649		P-0069959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	30	374	1	ENST00000368678.4:c.233C>T	p.Thr78Met	p.T78M	ENST00000368678		78	aCg/aTg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46715742	46715742	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	24	378	0	ENST00000371975.4:c.161C>A	p.Pro54His	p.P54H	ENST00000371975	NM_003579.3	54	cCt/cAt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371732	55371732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	35	466	0	ENST00000297316.4:c.422G>A	p.Arg141Gln	p.R141Q	ENST00000297316	NM_022454.3	141	cGg/cAg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555276	106555276	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	28	354	0	ENST00000369096.4:c.2393C>G	p.Pro798Arg	p.P798R	ENST00000369096	NM_001198.3	798	cCc/cGc																																																																															
MITF	4286	MSKCC	GRCh37	3	70008572	70008572	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0069959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	70	356	0	ENST00000352241.4:c.1161+1G>T		p.X387_splice	ENST00000352241	NM_198159.2	387																																																																																
EPHA7	2045	MSKCC	GRCh37	6	93974379	93974379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	21	272	0	ENST00000369303.4:c.1675G>A	p.Ala559Thr	p.A559T	ENST00000369303	NM_004440.3	559	Gct/Act																																																																															
CDK12	51755	MSKCC	GRCh37	17	37665972	37665972	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	64	265	0	ENST00000447079.4:c.2624T>G	p.Leu875Arg	p.L875R	ENST00000447079	NM_015083.1	875	cTa/cGa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46268694	46268694	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	179	406	0	ENST00000371998.3:c.2979G>C	p.Met993Ile	p.M993I	ENST00000371998		993	atG/atC																																																																															
RAD50	10111	MSKCC	GRCh37	5	131924563	131924563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	66	266	0	ENST00000265335.6:c.1236C>A	p.Asn412Lys	p.N412K	ENST00000265335		412	aaC/aaA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061123	38061197	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGC	CCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGC	G			P-0069967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	205	367	1	ENST00000250448.2:c.792_866delinsC	p.Lys264AsnfsTer4	p.K264Nfs*4	ENST00000250448	NM_004496.3	264	aaGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGc/aaCc																																																																															
MET	4233	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0069974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			723	90	258	0	ENST00000397752.3:c.3028+2T>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134911519	134911519	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752762812		P-0069980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	507	320	0	ENST00000398015.3:c.1984C>T	p.Arg662Cys	p.R662C	ENST00000398015	NM_004441.4	662	Cgt/Tgt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371972	55371972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	123	392	0	ENST00000297316.4:c.662C>T	p.Thr221Met	p.T221M	ENST00000297316	NM_022454.3	221	aCg/aTg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933462	49933462	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368644133		P-0069980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	310	416	0	ENST00000296474.3:c.2728C>T	p.Arg910Trp	p.R910W	ENST00000296474	NM_002447.2	910	Cgg/Tgg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521721	89521721	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372594677		P-0069980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	142	321	0	ENST00000336596.2:c.2798C>T	p.Thr933Met	p.T933M	ENST00000336596	NM_005233.5	933	aCg/aTg																																																																															
RB1	5925	MSKCC	GRCh37	13	49039161	49039161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	103	178	0	ENST00000267163.4:c.2239G>A	p.Glu747Lys	p.E747K	ENST00000267163	NM_000321.2	747	Gag/Aag																																																																															
GNB1	2782	MSKCC	GRCh37	1	1718858	1718858	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	169	310	0	ENST00000378609.4:c.935A>G	p.Asp312Gly	p.D312G	ENST00000378609	NM_002074.3	312	gAc/gGc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32182025	32182025	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	165	346	0	ENST00000375023.3:c.2029T>G	p.Cys677Gly	p.C677G	ENST00000375023	NM_004557.3	677	Tgt/Ggt																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564422	139564422	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200036562		P-0069980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	125	332	0	ENST00000308874.7:c.370C>T	p.Arg124Cys	p.R124C	ENST00000308874		124	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0069988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	102	330	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0069988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	49	332	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792732	33792737	+	inframe_deletion	In_Frame_Del	DEL	GCGGGT	GCGGGT	-	rs1002805239		P-0069988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	8	293	2	ENST00000498907.2:c.584_589del	p.His195_Pro196del	p.H195_P196del	ENST00000498907	NM_004364.3	195	cACCCGCcg/ccg																																																																															
ALK	238	MSKCC	GRCh37	2	29455272	29455272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	53	391	0	ENST00000389048.3:c.2530G>A	p.Gly844Ser	p.G844S	ENST00000389048	NM_004304.4	844	Ggt/Agt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916923	178916923	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	101	296	0	ENST00000263967.3:c.310C>G	p.Pro104Ala	p.P104A	ENST00000263967	NM_006218.2	104	Cca/Gca																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252910	36252911	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0069988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	65	321	0	ENST00000300305.3:c.451dup	p.Met151AsnfsTer9	p.M151Nfs*9	ENST00000300305		151	atg/aAtg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199768	138199768	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	55	395	0	ENST00000237289.4:c.1186A>T	p.Met396Leu	p.M396L	ENST00000237289	NM_001270507.1	396	Atg/Ttg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871776	12871776	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0069995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	80	266	0	ENST00000228872.4:c.493A>T	p.Lys165Ter	p.K165*	ENST00000228872	NM_004064.3	165	Aaa/Taa																																																																															
STK19	8859	MSKCC	GRCh37	6	31948506	31948506	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773429808		P-0069995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	24	110	0	ENST00000375331.2:c.977G>A	p.Arg326Gln	p.R326Q	ENST00000375331	NM_004197.1	326	cGg/cAg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022875	31022875	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	58	346	0	ENST00000375687.4:c.2360C>G	p.Thr787Ser	p.T787S	ENST00000375687	NM_015338.5	787	aCt/aGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831288	72831288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	78	314	0	ENST00000268489.5:c.5293del	p.Ala1765ProfsTer2	p.A1765Pfs*2	ENST00000268489	NM_006885.3	1765	Gcc/cc																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732985	74733034	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCAGCTCGCGGCCGTCCAGCACGGCCCCGTCCATGGCATCCATAGCGT	CCGCAGCTCGCGGCCGTCCAGCACGGCCCCGTCCATGGCATCCATAGCGT	-			P-0069995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	42	357	0	ENST00000359995.5:c.209_258del	p.Asp70GlyfsTer37	p.D70Gfs*37	ENST00000359995	NM_001195427.1	70	gACGCTATGGATGCCATGGACGGGGCCGTGCTGGACGGCCGCGAGCTGCGG/g																																																																															
CDH1	999	MSKCC	GRCh37	16	68857311	68857312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0069997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	102	240	0	ENST00000261769.5:c.1947dup	p.Ile650TyrfsTer13	p.I650Yfs*13	ENST00000261769	NM_004360.3	649	tct/tcTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873782	151873782	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0069997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	153	301	0	ENST00000262189.6:c.8756C>G	p.Ser2919Ter	p.S2919*	ENST00000262189	NM_170606.2	2919	tCa/tGa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115445	115115445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	122	240	0	ENST00000257566.3:c.881T>G	p.Ile294Arg	p.I294R	ENST00000257566	NM_016569.3	294	aTa/aGa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53225196	53225196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069997-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	157	322	0	ENST00000375401.3:c.3022G>A	p.Glu1008Lys	p.E1008K	ENST00000375401	NM_004187.3	1008	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	164	455	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600382	10600382	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	162	448	1	ENST00000171111.5:c.1473C>A	p.Tyr491Ter	p.Y491*	ENST00000171111	NM_203500.1	491	taC/taA																																																																															
MAX	4149	MSKCC	GRCh37	14	65560535	65560535	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0070000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	187	361	0	ENST00000358664.4:c.64-2A>G		p.X22_splice	ENST00000358664	NM_002382.4	22																																																																																
PRKCI	5584	MSKCC	GRCh37	3	170002262	170002262	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	72	206	0	ENST00000295797.4:c.1081G>T	p.Glu361Ter	p.E361*	ENST00000295797	NM_002740.5	361	Gaa/Taa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69069574	69069574	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1335517478		P-0070000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	107	248	0	ENST00000288368.4:c.4249G>A	p.Gly1417Arg	p.G1417R	ENST00000288368	NM_024870.2	1417	Gga/Aga																																																																															
HRAS	3265	MSKCC	GRCh37	11	534288	534288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894230		P-0070000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	194	366	0	ENST00000311189.7:c.35G>A	p.Gly12Asp	p.G12D	ENST00000311189		12	gGc/gAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100793	8100793	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs763545775		P-0070000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	104	384	0	ENST00000346208.3:c.767G>T	p.Arg256Leu	p.R256L	ENST00000346208		256	cGg/cTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187525122	187525122	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	104	330	0	ENST00000441802.2:c.10558A>T	p.Asn3520Tyr	p.N3520Y	ENST00000441802	NM_005245.3	3520	Aat/Tat																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16089952	16089952	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1264306279		P-0070000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	172	307	0	ENST00000268712.3:c.158C>T	p.Ala53Val	p.A53V	ENST00000268712	NM_006311.3	53	gCa/gTa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156615	55156615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	148	405	0	ENST00000257290.5:c.3016G>T	p.Gly1006Cys	p.G1006C	ENST00000257290	NM_006206.4	1006	Ggt/Tgt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625350	69625350	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	89	366	0	ENST00000334134.2:c.443G>T	p.Ser148Ile	p.S148I	ENST00000334134	NM_005247.2	148	aGc/aTc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149433938	149433938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	134	348	0	ENST00000286301.3:c.2710C>A	p.Gln904Lys	p.Q904K	ENST00000286301	NM_005211.3	904	Cag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111548	8111548	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	71	336	0	ENST00000346208.3:c.1034A>G	p.Tyr345Cys	p.Y345C	ENST00000346208		345	tAc/tGc																																																																															
STK19	8859	MSKCC	GRCh37	6	31939994	31939994	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0070000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	21	421	0	ENST00000375331.2:c.220+1G>T		p.X74_splice	ENST00000375331	NM_004197.1	74																																																																																
NTRK3	4916	MSKCC	GRCh37	15	88576250	88576250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1330829152		P-0070000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	142	358	0	ENST00000360948.2:c.1423G>A	p.Glu475Lys	p.E475K	ENST00000360948	NM_001012338.2	475	Gag/Aag																																																																															
SDHA	6389	MSKCC	GRCh37	5	235371	235371	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs372989971		P-0070000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	246	368	0	ENST00000264932.6:c.1177G>T	p.Val393Leu	p.V393L	ENST00000264932	NM_004168.2	393	Gtg/Ttg																																																																															
APLNR	187	MSKCC	GRCh37	11	57003363	57003363	+	stop_gained,NMD_transcript_variant	Nonsense_Mutation	SNP	G	G	C			P-0070000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	97	456	0	ENST00000257254.3:c.1116C>G	p.Tyr372Ter	p.Y372*	ENST00000257254		372	taC/taG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578267	7578267	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	88	700	0	ENST00000269305.4:c.582del	p.Ile195SerfsTer52	p.I195Sfs*52	ENST00000269305	NM_001126112.2	194	ctT/ct																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528592	157528592	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	90	609	0	ENST00000346085.5:c.6317G>C	p.Ser2106Thr	p.S2106T	ENST00000346085	NM_020732.3	2106	aGt/aCt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52724355	52724355	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	71	567	0	ENST00000322088.6:c.1487T>C	p.Leu496Pro	p.L496P	ENST00000322088	NM_014225.5	496	cTg/cCg																																																																															
BARD1	580	MSKCC	GRCh37	2	215593629	215593629	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs752114855		P-0070005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	70	558	0	ENST00000260947.4:c.2105T>C	p.Ile702Thr	p.I702T	ENST00000260947	NM_000465.2	702	aTc/aCc																																																																															
BARD1	580	MSKCC	GRCh37	2	215593424	215593424	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	56	477	0	ENST00000260947.4:c.2310del	p.Phe770LeufsTer14	p.F770Lfs*14	ENST00000260947	NM_000465.2	770	ttT/tt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969848	81969848	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs568724894		P-0070010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	70	460	1	ENST00000359376.3:c.2917G>A	p.Asp973Asn	p.D973N	ENST00000359376	NM_002661.3	973	Gac/Aac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881002	37881003	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTCCCCA			P-0070010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	371	531	0	ENST00000269571.5:c.2332_2340dup	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	-/GGCTCCCCA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427950	49427950	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775632051		P-0070010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	153	420	0	ENST00000301067.7:c.10640G>A	p.Arg3547His	p.R3547H	ENST00000301067	NM_003482.3	3547	cGc/cAc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0070010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	556	377	0				ENST00000310581	NM_198253.2																																																																																	
BRAF	673	MSKCC	GRCh37	7	140482928	140482928	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs749792302		P-0070010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	145	515	0	ENST00000288602.6:c.1207C>G	p.Pro403Ala	p.P403A	ENST00000288602	NM_004333.4	403	Cct/Gct																																																																															
TSC1	7248	MSKCC	GRCh37	9	135782161	135782161	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070010-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	62	300	0	ENST00000298552.3:c.1395T>A	p.Asp465Glu	p.D465E	ENST00000298552	NM_001162426.1	465	gaT/gaA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0070020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	36	190	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574001	7574008	+	frameshift_variant	Frame_Shift_Del	DEL	TCGGAACA	TCGGAACA	-			P-0070020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	106	434	0	ENST00000269305.4:c.1019_1026del	p.Met340ArgfsTer4	p.M340Rfs*4	ENST00000269305	NM_001126112.2	340	aTGTTCCGA/a																																																																															
PREX2	80243	MSKCC	GRCh37	8	69005904	69005904	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	47	394	0	ENST00000288368.4:c.2315A>T	p.His772Leu	p.H772L	ENST00000288368	NM_024870.2	772	cAc/cTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0070022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	114	445	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202977	16202977	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	85	531	2	ENST00000375759.3:c.685C>T	p.Arg229Ter	p.R229*	ENST00000375759	NM_015001.2	229	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0070022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	131	482	0	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
RPTOR	57521	MSKCC	GRCh37	17	78796990	78796990	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1301463689		P-0070022-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	124	482	2	ENST00000306801.3:c.1103C>T	p.Pro368Leu	p.P368L	ENST00000306801	NM_020761.2	368	cCg/cTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0070030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	25	412	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175225	112175225	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	274	523	0	ENST00000257430.4:c.3934G>T	p.Gly1312Ter	p.G1312*	ENST00000257430	NM_000038.5	1312	Gga/Tga																																																																															
MSH3	4437	MSKCC	GRCh37	5	80064749	80064749	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148896355		P-0070030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	83	413	0	ENST00000265081.6:c.2180G>A	p.Arg727Gln	p.R727Q	ENST00000265081	NM_002439.4	727	cGa/cAa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956772	68956772	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199819614		P-0070030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	112	389	0	ENST00000288368.4:c.890G>A	p.Arg297His	p.R297H	ENST00000288368	NM_024870.2	297	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591900	48591900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	24	513	0	ENST00000342988.3:c.1063G>T	p.Asp355Tyr	p.D355Y	ENST00000342988	NM_005359.5	355	Gac/Tac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710670	114710670	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	29	466	0	ENST00000543371.1:c.155C>A	p.Ser52Ter	p.S52*	ENST00000543371	NM_001198531.1	52	tCa/tAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	172	308	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707572	176707572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	237	467	0	ENST00000439151.2:c.5629C>T	p.Arg1877Cys	p.R1877C	ENST00000439151	NM_022455.4	1877	Cgt/Tgt																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800550	32800550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1322324230		P-0070030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	141	597	0	ENST00000374899.4:c.997C>T	p.Arg333Trp	p.R333W	ENST00000374899	NM_018833.2	333	Cgg/Tgg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	102	713	3	ENST00000342505.4:c.2580dup	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	170	699	4	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
IGF1	3479	MSKCC	GRCh37	12	102869559	102869559	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	196	555	0	ENST00000307046.8:c.82T>C	p.Ser28Pro	p.S28P	ENST00000307046	NM_001111285.1	28	Tcc/Ccc																																																																															
RB1	5925	MSKCC	GRCh37	13	48953760	48953760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913302		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	71	301	0	ENST00000267163.4:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000267163	NM_000321.2	455	Cga/Tga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	269	738	0	ENST00000250448.2:c.798C>G	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttG																																																																															
BLM	641	MSKCC	GRCh37	15	91333930	91333930	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs762354041		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	58	682	0	ENST00000355112.3:c.2875C>T	p.Arg959Ter	p.R959*	ENST00000355112	NM_000057.2	959	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830450	72830450	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	11	365	1	ENST00000268489.5:c.6131del	p.Pro2044LeufsTer57	p.P2044Lfs*57	ENST00000268489	NM_006885.3	2044	cCt/ct																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346097	89346097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1212718041		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	27	338	0	ENST00000301030.4:c.6853G>A	p.Ala2285Thr	p.A2285T	ENST00000301030	NM_001256183.1	2285	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	153	575	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780068		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	192	798	0	ENST00000269305.4:c.472C>T	p.Arg158Cys	p.R158C	ENST00000269305	NM_001126112.2	158	Cgc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1219388	1219388	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780717		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	134	728	0	ENST00000326873.7:c.440G>A	p.Arg147His	p.R147H	ENST00000326873	NM_000455.4	147	cGt/cAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212166	5212166	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775731386		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	31	826	0	ENST00000357368.4:c.4865C>T	p.Thr1622Met	p.T1622M	ENST00000357368	NM_002850.3	1622	aCg/aTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271691	15271691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	205	773	0	ENST00000263388.2:c.6748G>A	p.Glu2250Lys	p.E2250K	ENST00000263388	NM_000435.2	2250	Gaa/Aaa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366135	15366137	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	166	562	0	ENST00000263377.2:c.2018_2020del	p.Ser673del	p.S673del	ENST00000263377	NM_058243.2	673	tCCTgt/tgt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467197	25467197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	122	752	0	ENST00000264709.3:c.1678G>A	p.Val560Met	p.V560M	ENST00000264709	NM_175629.2	560	Gtg/Atg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25994394	25994394	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs565110158		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	207	605	0	ENST00000435504.4:c.419C>T	p.Pro140Leu	p.P140L	ENST00000435504		140	cCg/cTg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	168	724	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266837	+	protein_altering_variant	In_Frame_Del	DEL	TCTG	TCTG	C			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	101	554	0	ENST00000335508.6:c.2095_2098delinsG	p.Gln699_Lys700delinsGlu	p.Q699_K700delinsE	ENST00000335508	NM_012433.2	699	CAGAaa/Gaa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	11	643	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499363	89499363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1317589623		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	253	664	0	ENST00000336596.2:c.2538del	p.Met847TrpfsTer10	p.M847Wfs*10	ENST00000336596	NM_005233.5	845	Ccc/cc																																																																															
BCL6	604	MSKCC	GRCh37	3	187446989	187446989	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769386051		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	240	880	0	ENST00000232014.4:c.1204C>T	p.Arg402Cys	p.R402C	ENST00000232014	NM_001130845.1	402	Cgc/Tgc																																																																															
TET2	54790	MSKCC	GRCh37	4	106155661	106155661	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	114	722	0	ENST00000380013.4:c.565del	p.Ser189ValfsTer18	p.S189Vfs*18	ENST00000380013	NM_001127208.2	188	Aaa/aa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874636	35874637	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1384901919		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	81	599	0	ENST00000303115.3:c.799dup	p.Arg267LysfsTer3	p.R267Kfs*3	ENST00000303115	NM_002185.3	264	-/A																																																																															
RAD50	10111	MSKCC	GRCh37	5	131945083	131945083	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	87	421	0	ENST00000265335.6:c.3031C>T	p.Gln1011Ter	p.Q1011*	ENST00000265335		1011	Cag/Tag																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324726	31324726	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	14	171	0	ENST00000412585.2:c.82T>C	p.Ser28Pro	p.S28P	ENST00000412585	NM_005514.6	28	Tcc/Ccc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287248	33287248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148540788		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	216	726	0	ENST00000374542.5:c.1849G>A	p.Val617Ile	p.V617I	ENST00000374542	NM_001141970.1	617	Gtc/Atc																																																																															
SMO	6608	MSKCC	GRCh37	7	128829075	128829075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1247591045		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	60	544	1	ENST00000249373.3:c.88del	p.Ala30ArgfsTer25	p.A30Rfs*25	ENST00000249373	NM_005631.4	28	cGg/cg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874147	151874148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs771193709		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	163	700	8	ENST00000262189.6:c.8390dup	p.Glu2798GlyfsTer11	p.E2798Gfs*11	ENST00000262189	NM_170606.2	2797	aag/aaAg																																																																															
LYN	4067	MSKCC	GRCh37	8	56859023	56859023	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	33	428	0	ENST00000519728.1:c.149T>C	p.Leu50Pro	p.L50P	ENST00000519728	NM_002350.3	50	cTt/cCt																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006062	22006062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	248	796	0	ENST00000276925.6:c.341G>A	p.Arg114His	p.R114H	ENST00000276925	NM_004936.3	114	cGt/cAt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98268793	98268793	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	98	786	0	ENST00000331920.6:c.290del	p.Asn97ThrfsTer20	p.N97Tfs*20	ENST00000331920	NM_000264.3	97	aAc/ac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302845	15302845	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767539048		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	150	935	0	ENST00000263388.2:c.605C>T	p.Ala202Val	p.A202V	ENST00000263388	NM_000435.2	202	gCa/gTa																																																																															
PGR	5241	MSKCC	GRCh37	11	100933370	100933370	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1327187778		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	34	591	0	ENST00000325455.5:c.2020A>G	p.Thr674Ala	p.T674A	ENST00000325455	NM_001202474.3	674	Act/Gct																																																																															
PGR	5241	MSKCC	GRCh37	11	100999776	100999776	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	189	680	0	ENST00000325455.5:c.26C>A	p.Pro9His	p.P9H	ENST00000325455	NM_001202474.3	9	cCc/cAc																																																																															
CBL	867	MSKCC	GRCh37	11	119148981	119148981	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs397507492		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	170	652	0	ENST00000264033.4:c.1201T>C	p.Cys401Arg	p.C401R	ENST00000264033	NM_005188.3	401	Tgc/Cgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427932	49427932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	160	731	0	ENST00000301067.7:c.10658G>A	p.Gly3553Asp	p.G3553D	ENST00000301067	NM_003482.3	3553	gGc/gAc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281522	49281522	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	130	758	0	ENST00000282018.3:c.569T>C	p.Leu190Pro	p.L190P	ENST00000282018	NM_020377.2	190	cTg/cCg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986818	36986818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	26	682	0	ENST00000354822.5:c.871C>T	p.Pro291Ser	p.P291S	ENST00000354822	NM_001079668.2	291	Ccg/Tcg																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51529165	51529165	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750143398		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	42	643	1	ENST00000260433.2:c.187G>A	p.Gly63Ser	p.G63S	ENST00000260433		63	Ggc/Agc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30129456	30129456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868745990		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	35	657	0	ENST00000263025.4:c.572C>T	p.Ala191Val	p.A191V	ENST00000263025	NM_002746.2	191	gCc/gTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830739	72830739	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	97	758	0	ENST00000268489.5:c.5842C>A	p.Leu1948Met	p.L1948M	ENST00000268489	NM_006885.3	1948	Ctg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830783	72830783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	108	762	0	ENST00000268489.5:c.5798C>A	p.Pro1933His	p.P1933H	ENST00000268489	NM_006885.3	1933	cCt/cAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991998	72991998	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	213	714	0	ENST00000268489.5:c.2047C>T	p.Gln683Ter	p.Q683*	ENST00000268489	NM_006885.3	683	Cag/Tag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226880	2226880	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777524986		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	190	844	0	ENST00000398665.3:c.4360G>A	p.Ala1454Thr	p.A1454T	ENST00000398665	NM_032482.2	1454	Gcg/Acg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702211	47702211	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs63750657		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	190	607	0	ENST00000233146.2:c.1807G>C	p.Asp603His	p.D603H	ENST00000233146	NM_000251.2	603	Gat/Cat																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665317	138665317	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	183	743	0	ENST00000330315.3:c.248A>G	p.Tyr83Cys	p.Y83C	ENST00000330315	NM_023067.3	83	tAc/tGc																																																																															
ATR	545	MSKCC	GRCh37	3	142231259	142231259	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	105	526	0	ENST00000350721.4:c.4695T>A	p.Asn1565Lys	p.N1565K	ENST00000350721	NM_001184.3	1565	aaT/aaA																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143181652	143181653	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1289218785		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	191	458	0	ENST00000262992.4:c.680dup	p.Leu227PhefsTer11	p.L227Ffs*11	ENST00000262992	NM_001101669.1	227	ttg/ttTg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526279	31526279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776469778		P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	108	764	2	ENST00000344624.3:c.761G>A	p.Arg254His	p.R254H	ENST00000344624		254	cGc/cAc																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31237304	31237304	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	33	645	0	ENST00000376228.5:c.1016-2A>G		p.X339_splice	ENST00000376228	NM_002117.5	339																																																																																
PTP4A1	7803	MSKCC	GRCh37	6	64286832	64286832	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	41	572	0	ENST00000370651.3:c.47A>G	p.Asn16Ser	p.N16S	ENST00000370651	NM_003463.4	16	aAc/aGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151843703	151843703	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	175	580	0	ENST00000262189.6:c.14012T>C	p.Val4671Ala	p.V4671A	ENST00000262189	NM_170606.2	4671	gTg/gCg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38135925	38135925	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	84	515	2	ENST00000317025.8:c.3766G>T	p.Glu1256Ter	p.E1256*	ENST00000317025	NM_023034.1	1256	Gag/Tag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518018	8518018	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	84	657	0	ENST00000356435.5:c.1373A>T	p.Asp458Val	p.D458V	ENST00000356435		458	gAt/gTt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933485	39933485	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	42	412	0	ENST00000378444.4:c.1114C>A	p.Leu372Met	p.L372M	ENST00000378444	NM_001123385.1	372	Ctg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0070053-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	76	592	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0070053-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	53	347	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
AR	367	MSKCC	GRCh37	X	66766451	66766451	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070053-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	75	285	0	ENST00000374690.3:c.1463A>C	p.Gln488Pro	p.Q488P	ENST00000374690	NM_000044.3	488	cAg/cCg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56832431	56832431	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0070058-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	141	433	0	ENST00000308159.5:c.341T>G	p.Ile114Ser	p.I114S	ENST00000308159	NM_014669.4	114	aTc/aGc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59885994	59885994	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780834054		P-0070071-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	316	540	3	ENST00000259008.2:c.752G>A	p.Arg251His	p.R251H	ENST00000259008	NM_032043.2	251	cGc/cAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627885	187627885	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs752785176		P-0070071-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	348	582	0	ENST00000441802.2:c.3097G>T	p.Val1033Leu	p.V1033L	ENST00000441802	NM_005245.3	1033	Gtg/Ttg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070071-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	189	359	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197093	26197093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070071-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	376	734	0	ENST00000356476.2:c.386G>A	p.Arg129His	p.R129H	ENST00000356476		129	cGc/cAc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849087	156849087	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070071-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	591	621	0	ENST00000524377.1:c.1979A>G	p.Gln660Arg	p.Q660R	ENST00000524377	NM_002529.3	660	cAg/cGg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107916	30107916	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070071-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	289	479	0	ENST00000331968.5:c.891G>C	p.Gln297His	p.Q297H	ENST00000331968	NM_002742.2	297	caG/caC																																																																															
ATRX	546	MSKCC	GRCh37	X	76939131	76939131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070071-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	318	572	0	ENST00000373344.5:c.1617G>T	p.Gln539His	p.Q539H	ENST00000373344	NM_000489.3	539	caG/caT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610490	10610490	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	204	332	0	ENST00000171111.5:c.220C>T	p.Gln74Ter	p.Q74*	ENST00000171111	NM_203500.1	74	Cag/Tag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453132	140453132	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121913365		P-0070082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	181	307	0	ENST00000288602.6:c.1803A>C	p.Lys601Asn	p.K601N	ENST00000288602	NM_004333.4	601	aaA/aaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913240		P-0070082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	200	287	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376332	118376332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	110	438	0	ENST00000534358.1:c.9725C>T	p.Thr3242Ile	p.T3242I	ENST00000534358	NM_005933.3	3242	aCc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501191		P-0070083-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	60	386	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0070083-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	368	413	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720837	89720837	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0070083-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	27	126	0	ENST00000371953.3:c.988A>T	p.Lys330Ter	p.K330*	ENST00000371953	NM_000314.4	330	Aaa/Taa																																																																															
MSI1	4440	MSKCC	GRCh37	12	120785302	120785302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070083-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	113	398	0	ENST00000257552.2:c.806C>A	p.Ala269Asp	p.A269D	ENST00000257552	NM_002442.3	269	gCc/gAc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67650756	67650756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			48	437	361	0	ENST00000264010.4:c.1061C>T	p.Ser354Phe	p.S354F	ENST00000264010	NM_006565.3	354	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0070096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			55	572	497	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0070096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	649	350	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KDR	3791	MSKCC	GRCh37	4	55953846	55953846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	405	390	1	ENST00000263923.4:c.3590C>T	p.Ser1197Leu	p.S1197L	ENST00000263923	NM_002253.2	1197	tCa/tTa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500809	149500809	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070096-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	163	378	0	ENST00000261799.4:c.2421C>G	p.Ser807Arg	p.S807R	ENST00000261799	NM_002609.3	807	agC/agG																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			102	310	510	0	ENST00000304494.5:c.247C>A	p.His83Asn	p.H83N	ENST00000304494	NM_000077.4	83	Cac/Aac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610153	10610153	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			103	507	556	0	ENST00000171111.5:c.557G>T	p.Gly186Val	p.G186V	ENST00000171111	NM_203500.1	186	gGc/gTc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680734	88680734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	385	436	0	ENST00000360948.2:c.523C>A	p.Gln175Lys	p.Q175K	ENST00000360948	NM_001012338.2	175	Cag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			305	253	308	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1218421	1218421	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			91	425	482	0	ENST00000326873.7:c.297del	p.Gln100AsnfsTer3	p.Q100Nfs*3	ENST00000326873	NM_000455.4	99	aTt/at																																																																															
NADK	65220	MSKCC	GRCh37	1	1687953	1687953	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			104	314	504	0	ENST00000341426.5:c.488C>G	p.Thr163Ser	p.T163S	ENST00000341426	NM_023018.4	163	aCc/aGc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135100	11135100	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			94	381	427	0	ENST00000344626.4:c.3067G>T	p.Glu1023Ter	p.E1023*	ENST00000344626	NM_003072.3	1023	Gag/Tag																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607641	46607641	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			442	322	480	0	ENST00000263734.3:c.1830del	p.Asp610GlufsTer86	p.D610Efs*86	ENST00000263734	NM_001430.4	610	gaT/ga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217175	66217175	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0070110-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			268	282	418	0	ENST00000273854.3:c.2440T>C	p.Cys814Arg	p.C814R	ENST00000273854	NM_004439.5	814	Tgc/Cgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0070147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	133	588	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591104	67591115	+	inframe_deletion	In_Frame_Del	DEL	TTAAACCAGACC	TTAAACCAGACC	-			P-0070147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	83	385	0	ENST00000274335.5:c.1700_1711del	p.Lys567_Leu570del	p.K567_L570del	ENST00000274335		566	aTTAAACCAGACCtt/att																																																																															
APLNR	187	MSKCC	GRCh37	11	57003693	57003693	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	A			P-0070147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	105	532	0	ENST00000257254.3:c.786G>T	p.Met262Ile	p.M262I	ENST00000257254		262	atG/atT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118366437	118366437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	105	372	0	ENST00000534358.1:c.5386G>A	p.Val1796Met	p.V1796M	ENST00000534358	NM_005933.3	1796	Gtg/Atg																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872461	35872461	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	116	455	0	ENST00000216797.5:c.442C>G	p.Leu148Val	p.L148V	ENST00000216797	NM_020529.2	148	Cta/Gta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0070164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			48	96	203	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190738308	190738308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	16	170	0	ENST00000441310.2:c.2560C>A	p.Leu854Ile	p.L854I	ENST00000441310	NM_000534.4	854	Ctt/Att																																																																															
APC	324	MSKCC	GRCh37	5	112164566	112164566	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	90	174	0	ENST00000257430.4:c.1643del	p.Leu548Ter	p.L548*	ENST00000257430	NM_000038.5	547	gTt/gt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909688	50909688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	52	245	3	ENST00000440232.2:c.1408C>T	p.Arg470Cys	p.R470C	ENST00000440232	NM_002691.3	470	Cgc/Tgc																																																																															
HGF	3082	MSKCC	GRCh37	7	81381456	81381456	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0070164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	54	197	0	ENST00000222390.5:c.605A>T	p.Asp202Val	p.D202V	ENST00000222390	NM_000601.4	202	gAc/gTc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243668568	243668568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	48	207	0	ENST00000263826.5:c.1423G>T	p.Ala475Ser	p.A475S	ENST00000263826	NM_005465.4	475	Gca/Tca																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117828	70117879	+	frameshift_variant	Frame_Shift_Del	DEL	GCAAGAACAAGCCGCACGTCAAGCGGCCCATGAACGCCTTCATGGTGTGGGC	GCAAGAACAAGCCGCACGTCAAGCGGCCCATGAACGCCTTCATGGTGTGGGC	-			P-0070164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	55	257	0	ENST00000245479.2:c.299_350del	p.Lys100ArgfsTer30	p.K100Rfs*30	ENST00000245479	NM_000346.3	99	aGCAAGAACAAGCCGCACGTCAAGCGGCCCATGAACGCCTTCATGGTGTGGGCg/ag																																																																															
RB1	5925	MSKCC	GRCh37	13	48941648	48941648	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913300		P-0070179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	65	229	0	ENST00000267163.4:c.958C>T	p.Arg320Ter	p.R320*	ENST00000267163	NM_000321.2	320	Cga/Tga																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0070179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	58	324	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0070179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	73	411	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724541	162724541	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759709680		P-0070179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			706	69	476	1	ENST00000367921.3:c.313C>T	p.Arg105Cys	p.R105C	ENST00000367921	NM_006182.2	105	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0070179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	85	305	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417330	139417330	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	59	469	0	ENST00000277541.6:c.714C>A	p.Asp238Glu	p.D238E	ENST00000277541	NM_017617.3	238	gaC/gaA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0070181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	107	474	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0070181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	106	531	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
SLX4	84464	MSKCC	GRCh37	16	3656507	3656507	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	191	530	0	ENST00000294008.3:c.728A>G	p.Lys243Arg	p.K243R	ENST00000294008	NM_032444.2	243	aAg/aGg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043468	180043468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	35	503	0	ENST00000261937.6:c.3118G>A	p.Ala1040Thr	p.A1040T	ENST00000261937	NM_182925.4	1040	Gct/Act																																																																															
POLE	5426	MSKCC	GRCh37	12	133218841	133218841	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	100	522	0	ENST00000320574.5:c.5095G>T	p.Ala1699Ser	p.A1699S	ENST00000320574	NM_006231.2	1699	Gct/Tct																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149511615	149511615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	34	482	0	ENST00000261799.4:c.1170G>T	p.Glu390Asp	p.E390D	ENST00000261799	NM_002609.3	390	gaG/gaT																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912786	50912786	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0070181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	39	522	0	ENST00000440232.2:c.2017G>T	p.Glu673Ter	p.E673*	ENST00000440232	NM_002691.3	673	Gag/Tag																																																																															
MDM4	4194	MSKCC	GRCh37	1	204512058	204512058	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs376011037		P-0070181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	73	432	0	ENST00000367182.3:c.658T>G	p.Leu220Val	p.L220V	ENST00000367182	NM_001278516.1	220	Tta/Gta																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206658568	206658568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199623162		P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			957	143	600	0	ENST00000367120.3:c.1541C>T	p.Thr514Met	p.T514M	ENST00000367120	NM_014002.3	514	aCg/aTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332760	70332760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	123	449	0	ENST00000373644.4:c.665G>A	p.Arg222His	p.R222H	ENST00000373644	NM_030625.2	222	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108172510	108172510	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	208	384	0	ENST00000278616.4:c.5318del	p.Lys1773SerfsTer3	p.K1773Sfs*3	ENST00000278616	NM_000051.3	1771	agA/ag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			909	220	654	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112891115	112891115	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	230	471	0	ENST00000351677.2:c.449C>G	p.Ser150Cys	p.S150C	ENST00000351677	NM_002834.3	150	tCt/tGt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	238	537	1	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527948	103527948	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1180157198		P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			748	233	580	0	ENST00000355739.4:c.3256G>A	p.Gly1086Arg	p.G1086R	ENST00000355739	NM_000123.3	1086	Gga/Aga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	256	641	4	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992414	72992414	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62620235		P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	331	629	0	ENST00000268489.5:c.1631C>T	p.Ser544Leu	p.S544L	ENST00000268489	NM_006885.3	544	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	284	533	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627927	37627928	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	306	550	1	ENST00000447079.4:c.1843_1844del	p.Val615AsnfsTer25	p.V615Nfs*25	ENST00000447079	NM_015083.1	614	tcTGta/tcta																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245586	41245587	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs80357853		P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	223	537	1	ENST00000357654.3:c.1961dup	p.Tyr655ValfsTer18	p.Y655Vfs*18	ENST00000357654	NM_007294.3	654	aag/aaAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604770	48604770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	276	537	0	ENST00000342988.3:c.1592G>A	p.Arg531Gln	p.R531Q	ENST00000342988	NM_005359.5	531	cGg/cAg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288789	15288789	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	87	456	2	ENST00000263388.2:c.3950del	p.Pro1317GlnfsTer103	p.P1317Qfs*103	ENST00000263388	NM_000435.2	1317	cCa/ca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219029	36219029	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748191051		P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			830	125	538	0	ENST00000222270.7:c.4528G>A	p.Ala1510Thr	p.A1510T	ENST00000222270	NM_014727.1	1510	Gcc/Acc																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434213	12434213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	125	429	0	ENST00000287820.6:c.581G>T	p.Arg194Leu	p.R194L	ENST00000287820	NM_015869.4	194	cGg/cTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	267	481	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440379	52440379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	287	601	0	ENST00000460680.1:c.673G>A	p.Asp225Asn	p.D225N	ENST00000460680	NM_004656.3	225	Gac/Aac																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177584	56177584	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368201444		P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1137	148	527	0	ENST00000399503.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000399503	NM_005921.1	853	Cgt/Tgt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324933	31324933	+	start_lost	Translation_Start_Site	SNP	C	C	T	rs779047853		P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	211	438	0	ENST00000412585.2:c.3G>A	p.Met1?	p.M1?	ENST00000412585	NM_005514.6	1	atG/atA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28929495		P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	650	504	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	730	535	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101147	27101147	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	253	600	0	ENST00000324856.7:c.4429C>A	p.Pro1477Thr	p.P1477T	ENST00000324856	NM_006015.4	1477	Cca/Aca																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647167	23647167	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	252	546	0	ENST00000261584.4:c.700G>C	p.Asp234His	p.D234H	ENST00000261584	NM_024675.3	234	Gat/Cat																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120367	70120367	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			741	328	611	0	ENST00000245479.2:c.1369G>T	p.Gly457Cys	p.G457C	ENST00000245479	NM_000346.3	457	Ggc/Tgc																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631819	67631821	+	inframe_deletion	In_Frame_Del	DEL	AAT	AAT	-			P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			767	132	547	0	ENST00000272342.5:c.2011_2013del	p.Asn671del	p.N671del	ENST00000272342	NM_019002.3	669	AAT/-																																																																															
CUL3	8452	MSKCC	GRCh37	2	225362545	225362547	+	inframe_deletion	In_Frame_Del	DEL	ACT	ACT	-			P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	187	397	0	ENST00000264414.4:c.1630_1632del	p.Ser544del	p.S544del	ENST00000264414	NM_003590.4	544	AGT/-																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445277	29445277	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759777321		P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	158	573	0	ENST00000544604.2:c.1108G>A	p.Gly370Ser	p.G370S	ENST00000544604	NM_001206998.1	370	Ggc/Agc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37059073	37059073	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	267	535	0	ENST00000231790.2:c.869del	p.Pro290HisfsTer7	p.P290Hfs*7	ENST00000231790	NM_000249.3	289	caC/ca																																																																															
REST	5978	MSKCC	GRCh37	4	57798202	57798205	+	frameshift_variant	Frame_Shift_Del	DEL	TTTG	TTTG	-			P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	99	487	0	ENST00000309042.7:c.3183_3186del	p.Cys1062SerfsTer48	p.C1062Sfs*48	ENST00000309042	NM_005612.4	1060	TTTGtt/tt																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020918	26020918	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			844	157	632	0	ENST00000357647.3:c.203del	p.Phe68SerfsTer23	p.F68Sfs*23	ENST00000357647	NM_003529.2	67	ccT/cc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145743156	145743156	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs557142503		P-0070191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	193	401	0	ENST00000428558.2:c.13C>T	p.Arg5Trp	p.R5W	ENST00000428558	NM_004260.3	5	Cgg/Tgg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561335	9561335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070193-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	140	483	0	ENST00000353224.5:c.447G>T	p.Lys149Asn	p.K149N	ENST00000353224	NM_177990.2	149	aaG/aaT																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720671	89720671	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs587782607		P-0070193-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	56	167	0	ENST00000371953.3:c.822G>A	p.Trp274Ter	p.W274*	ENST00000371953	NM_000314.4	274	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1202793339		P-0070193-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	209	550	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
NFKBIA	4792	MSKCC	GRCh37	14	35871650	35871650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070193-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	142	417	0	ENST00000216797.5:c.856G>A	p.Glu286Lys	p.E286K	ENST00000216797	NM_020529.2	286	Gag/Aag																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370941	55370941	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs745939637		P-0070193-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	59	420	0	ENST00000297316.4:c.243C>A	p.Asp81Glu	p.D81E	ENST00000297316	NM_022454.3	81	gaC/gaA																																																																															
ALK	238	MSKCC	GRCh37	2	29497974	29497974	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs892131322		P-0070193-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	143	380	0	ENST00000389048.3:c.2032G>C	p.Asp678His	p.D678H	ENST00000389048	NM_004304.4	678	Gac/Cac																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439766	51439784	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAAAGAAGGCCACCTCC	GCCAAAGAAGGCCACCTCC	-			P-0070193-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	118	497	0	ENST00000262662.1:c.332_350del	p.Ala111GlyfsTer7	p.A111Gfs*7	ENST00000262662		111	GCCAAAGAAGGCCACCTCCgg/gg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65334995	65334995	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0070193-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	90	372	0	ENST00000342505.4:c.646A>T	p.Ser216Cys	p.S216C	ENST00000342505	NM_002227.2	216	Agc/Tgc																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872414	35872431	+	inframe_deletion	In_Frame_Del	DEL	CAGGACTCCCACGCTGGC	CAGGACTCCCACGCTGGC	-			P-0070193-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	157	486	0	ENST00000216797.5:c.472_489del	p.Ala158_Leu163del	p.A158_L163del	ENST00000216797	NM_020529.2	158	GCCAGCGTGGGAGTCCTG/-																																																																															
APC	324	MSKCC	GRCh37	5	112137045	112137045	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070193-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	97	271	0	ENST00000257430.4:c.799G>C	p.Gly267Arg	p.G267R	ENST00000257430	NM_000038.5	267	Gga/Cga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0070198-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	281	248	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs786201838		P-0070198-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	246	268	1	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89352506	89352506	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751642003		P-0070198-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	542	188	0	ENST00000301030.4:c.833C>T	p.Thr278Met	p.T278M	ENST00000301030	NM_001256183.1	278	aCg/aTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120491123	120491123	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs782147498		P-0070198-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	267	224	0	ENST00000256646.2:c.2666A>G	p.His889Arg	p.H889R	ENST00000256646	NM_024408.3	889	cAt/cGt																																																																															
WT1	7490	MSKCC	GRCh37	11	32456564	32456564	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs916583720		P-0070206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	40	270	0	ENST00000332351.3:c.328C>T	p.Pro110Ser	p.P110S	ENST00000332351	NM_024426.4	110	Ccc/Tcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434013	49434013	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0070206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	59	495	0	ENST00000301067.7:c.7540C>T	p.Gln2514Ter	p.Q2514*	ENST00000301067	NM_003482.3	2514	Cag/Tag																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176153824	176153824	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	113	183	0	ENST00000367669.3:c.412A>G	p.Ile138Val	p.I138V	ENST00000367669	NM_022457.5	138	Atc/Gtc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2133725	2133725	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45452994		P-0070206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	49	326	0	ENST00000219476.3:c.3913C>T	p.Pro1305Ser	p.P1305S	ENST00000219476	NM_000548.3	1305	Ccg/Tcg																																																																															
CDH1	999	MSKCC	GRCh37	16	68845763	68845763	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0070206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	97	301	0	ENST00000261769.5:c.1008+1G>T		p.X336_splice	ENST00000261769	NM_004360.3	336																																																																																
ATRX	546	MSKCC	GRCh37	X	76940461	76940461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	34	230	0	ENST00000373344.5:c.632G>T	p.Arg211Leu	p.R211L	ENST00000373344	NM_000489.3	211	cGt/cTt																																																																															
ATM	472	MSKCC	GRCh37	11	108235838	108235838	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	108	350	0	ENST00000278616.4:c.8880G>T	p.Trp2960Cys	p.W2960C	ENST00000278616	NM_000051.3	2960	tgG/tgT																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546966	9546966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	159	403	0	ENST00000353224.5:c.1056G>T	p.Arg352Ser	p.R352S	ENST00000353224	NM_177990.2	352	agG/agT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0070207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	77	219	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188880	32188880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			821	239	498	0	ENST00000375023.3:c.674G>A	p.Gly225Glu	p.G225E	ENST00000375023	NM_004557.3	225	gGg/gAg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87339265	87339265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	64	317	0	ENST00000277120.3:c.847G>A	p.Val283Met	p.V283M	ENST00000277120		283	Gtg/Atg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11189870	11189870	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	95	339	0	ENST00000361445.4:c.5639A>G	p.Tyr1880Cys	p.Y1880C	ENST00000361445	NM_004958.3	1880	tAc/tGc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045731	47045731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			920	139	471	0	ENST00000329236.7:c.2379del	p.Trp793Ter	p.W793*	ENST00000329236	NM_001204466.1	793	tGg/tg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864123	57864123	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			983	529	469	0	ENST00000228682.2:c.1600G>T	p.Gly534Cys	p.G534C	ENST00000228682	NM_005269.2	534	Ggc/Tgc																																																																															
HRAS	3265	MSKCC	GRCh37	11	532680	532680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			896	53	366	0	ENST00000311189.7:c.526G>A	p.Glu176Lys	p.E176K	ENST00000311189		176	Gag/Aag																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99193456	99193456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0070207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			841	94	368	0	ENST00000074304.5:c.2651G>T	p.Cys884Phe	p.C884F	ENST00000074304	NM_001134224.1	884	tGc/tTc																																																																															
TEK	7010	MSKCC	GRCh37	9	27203059	27203059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			830	80	384	0	ENST00000380036.4:c.2151C>A	p.Asn717Lys	p.N717K	ENST00000380036	NM_000459.3	717	aaC/aaA																																																																															
FANCA	2175	MSKCC	GRCh37	16	89851300	89851300	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070211-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	23	409	0	ENST00000389301.3:c.1432T>A	p.Ser478Thr	p.S478T	ENST00000389301	NM_000135.2	478	Tca/Aca																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435692	18435692	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0070211-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	98	363	0	ENST00000266497.5:c.677A>C	p.Glu226Ala	p.E226A	ENST00000266497		226	gAg/gCg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573793	64573793	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070211-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	33	605	0	ENST00000337652.1:c.975del	p.Tyr326ThrfsTer47	p.Y326Tfs*47	ENST00000337652	NM_130803.2	325	ccC/cc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573707	64573710	+	frameshift_variant	Frame_Shift_Del	DEL	TGGA	TGGA	-			P-0070211-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	153	553	0	ENST00000337652.1:c.1058_1061del	p.Ile353ArgfsTer19	p.I353Rfs*19	ENST00000337652	NM_130803.2	353	aTCCAg/ag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	26	568	0	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	36	616	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TET1	80312	MSKCC	GRCh37	10	70332272	70332273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1446158817		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	13	443	2	ENST00000373644.4:c.184dup	p.Thr62AsnfsTer4	p.T62Nfs*4	ENST00000373644	NM_030625.2	59	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514495		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	18	557	0	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622115	1622115	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759917180		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	29	572	1	ENST00000344749.5:c.760G>A	p.Gly254Ser	p.G254S	ENST00000344749	NM_001136139.2	254	Ggc/Agc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533938	63533939	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	14	521	0	ENST00000307078.5:c.1214_1215dup	p.Gly406ArgfsTer53	p.G406Rfs*53	ENST00000307078	NM_004655.3	405	-/AG																																																																															
BRCA2	675	MSKCC	GRCh37	13	32905116	32905116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55854959		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	12	317	0	ENST00000380152.3:c.742G>A	p.Ala248Thr	p.A248T	ENST00000380152		248	Gct/Act																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435815	56435815	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755967475		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	32	592	0	ENST00000407977.2:c.1322del	p.Pro441LeufsTer61	p.P441Lfs*61	ENST00000407977		441	cCt/ct																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933456	49933456	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	17	593	1	ENST00000296474.3:c.2734del	p.Asp912ThrfsTer24	p.D912Tfs*24	ENST00000296474	NM_002447.2	912	Gac/ac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	67	431	0	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813316	102813316	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1404671399		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	14	498	0	ENST00000307046.8:c.373C>T	p.Arg125Cys	p.R125C	ENST00000307046	NM_001111285.1	125	Cgc/Tgc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230872	66230873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	26	368	0	ENST00000273854.3:c.2098dup	p.Arg700LysfsTer11	p.R700Kfs*11	ENST00000273854	NM_004439.5	700	aga/aAga																																																																															
JAK3	3718	MSKCC	GRCh37	19	17954247	17954247	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143586866		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	20	503	1	ENST00000458235.1:c.362G>A	p.Arg121His	p.R121H	ENST00000458235	NM_000215.3	121	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5246048	5246048	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781664688		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	22	369	0	ENST00000357368.4:c.727G>A	p.Val243Met	p.V243M	ENST00000357368	NM_002850.3	243	Gtg/Atg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021250	31021250	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs375215583		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	35	470	0	ENST00000375687.4:c.1249C>T	p.Arg417Ter	p.R417*	ENST00000375687	NM_015338.5	417	Cga/Tga																																																																															
ROS1	6098	MSKCC	GRCh37	6	117680985	117680985	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771443531		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	17	336	1	ENST00000368508.3:c.3635G>A	p.Arg1212His	p.R1212H	ENST00000368508	NM_002944.2	1212	cGc/cAc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206649643	206649643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	19	477	0	ENST00000367120.3:c.478G>A	p.Ala160Thr	p.A160T	ENST00000367120	NM_014002.3	160	Gct/Act																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	54	578	1	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9776541	9776541	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779226622		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	16	427	0	ENST00000377346.4:c.644C>T	p.Ala215Val	p.A215V	ENST00000377346	NM_005026.3	215	gCg/gTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157469899	157469899	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs988746594		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	18	512	0	ENST00000346085.5:c.2693G>A	p.Arg898Gln	p.R898Q	ENST00000346085	NM_020732.3	898	cGa/cAa																																																																															
ATR	545	MSKCC	GRCh37	3	142274740	142274741	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	31	350	0	ENST00000350721.4:c.2319_2320del	p.Lys773AsnfsTer3	p.K773Nfs*3	ENST00000350721	NM_001184.3	773	aaAAta/aata																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343475	118343475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	16	529	0	ENST00000534358.1:c.1601C>T	p.Ser534Leu	p.S534L	ENST00000534358	NM_005933.3	534	tCg/tTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100246	157100246	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773467188		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	28	320	0	ENST00000346085.5:c.1183G>A	p.Ala395Thr	p.A395T	ENST00000346085	NM_020732.3	395	Gcc/Acc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231105	98231105	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	12	442	0	ENST00000331920.6:c.2178del	p.Cys727ValfsTer19	p.C727Vfs*19	ENST00000331920	NM_000264.3	726	ccC/cc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860464	151860464	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147350420		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	16	535	0	ENST00000262189.6:c.10198C>T	p.Arg3400Cys	p.R3400C	ENST00000262189	NM_170606.2	3400	Cgt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55214368	55214368	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761795138		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	10	437	0	ENST00000275493.2:c.494G>A	p.Arg165Gln	p.R165Q	ENST00000275493	NM_005228.3	165	cGg/cAg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117861258	117861258	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143363239		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	23	279	0	ENST00000297338.2:c.1631C>T	p.Ala544Val	p.A544V	ENST00000297338	NM_006265.2	544	gCa/gTa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131972871	131972871	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs745797941		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	14	214	0	ENST00000265335.6:c.3454C>T	p.Arg1152Ter	p.R1152*	ENST00000265335		1152	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221720	55221720	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372202099		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	23	480	0	ENST00000275493.2:c.764G>A	p.Arg255Gln	p.R255Q	ENST00000275493	NM_005228.3	255	cGa/cAa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123227876	123227876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868559404		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	15	288	1	ENST00000218089.9:c.3587G>A	p.Gly1196Asp	p.G1196D	ENST00000218089	NM_001042749.1	1196	gGc/gAc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866364	42866364	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753509316		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	48	522	0	ENST00000398585.3:c.268G>A	p.Ala90Thr	p.A90T	ENST00000398585	NM_001135099.1	90	Gcc/Acc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50916686	50916686	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1042614681		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	34	401	0	ENST00000440232.2:c.2158G>A	p.Val720Ile	p.V720I	ENST00000440232	NM_002691.3	720	Gtc/Atc																																																																															
ATRX	546	MSKCC	GRCh37	X	76891541	76891541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	12	325	0	ENST00000373344.5:c.4564G>A	p.Glu1522Lys	p.E1522K	ENST00000373344	NM_000489.3	1522	Gaa/Aaa																																																																															
CIC	23152	MSKCC	GRCh37	19	42791518	42791518	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772636832		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	40	550	0	ENST00000575354.2:c.499G>A	p.Gly167Arg	p.G167R	ENST00000575354	NM_015125.3	167	Gga/Aga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534429	63534429	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	27	507	0	ENST00000307078.5:c.1092del	p.Val365TrpfsTer10	p.V365Wfs*10	ENST00000307078	NM_004655.3	364	ccC/cc																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612740	228612740	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747322437		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	31	654	0	ENST00000366696.1:c.287C>T	p.Ala96Val	p.A96V	ENST00000366696	NM_003493.2	96	gCg/gTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42058415	42058415	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374431638		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	34	419	0	ENST00000219905.7:c.8135C>T	p.Thr2712Met	p.T2712M	ENST00000219905	NM_001164273.1	2712	aCg/aTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023423	27023424	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	37	421	0	ENST00000324856.7:c.532dup	p.Ser178LysfsTer222	p.S178Kfs*222	ENST00000324856	NM_006015.4	177	caa/cAaa																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480654	50480654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	32	434	0	ENST00000394963.4:c.524C>A	p.Pro175His	p.P175H	ENST00000394963	NM_003076.4	175	cCc/cAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29676254	29676254	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659856		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	22	336	0	ENST00000358273.4:c.7306G>A	p.Val2436Met	p.V2436M	ENST00000358273	NM_001042492.2	2436	Gtg/Atg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367926	15367926	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs929177624		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	21	426	0	ENST00000263377.2:c.1400C>T	p.Ala467Val	p.A467V	ENST00000263377	NM_058243.2	467	gCc/gTc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661201	227661201	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200141729		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	13	549	0	ENST00000305123.5:c.2254G>A	p.Gly752Ser	p.G752S	ENST00000305123	NM_005544.2	752	Ggc/Agc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21349262	21349262	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781776791		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	17	552	0	ENST00000215739.8:c.1889G>A	p.Arg630Gln	p.R630Q	ENST00000215739	NM_006767.3	630	cGg/cAg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436803	110436803	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1200134173		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	20	588	0	ENST00000375856.3:c.1598G>A	p.Gly533Asp	p.G533D	ENST00000375856	NM_003749.2	533	gGc/gAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912141	114912141	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766538576		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	23	365	0	ENST00000543371.1:c.1211G>A	p.Arg404Gln	p.R404Q	ENST00000543371	NM_001198531.1	404	cGg/cAg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37672063	37672063	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	15	282	0	ENST00000447079.4:c.2846+2T>A		p.X949_splice	ENST00000447079	NM_015083.1	949																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31024179	31024179	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	23	529	0	ENST00000375687.4:c.3664T>C	p.Ser1222Pro	p.S1222P	ENST00000375687	NM_015338.5	1222	Tcc/Ccc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46242711	46242711	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1331723696		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	13	282	0	ENST00000334344.6:c.1673G>A	p.Arg558His	p.R558H	ENST00000334344	NM_152641.2	558	cGt/cAt																																																																															
GAB2	9846	MSKCC	GRCh37	11	78128750	78128750	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	18	470	0	ENST00000361507.4:c.17A>G	p.Asp6Gly	p.D6G	ENST00000361507	NM_080491.2	6	gAc/gGc																																																																															
NADK	65220	MSKCC	GRCh37	1	1686858	1686858	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	38	384	0	ENST00000341426.5:c.643T>G	p.Phe215Val	p.F215V	ENST00000341426	NM_023018.4	215	Ttc/Gtc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46270959	46270959	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	20	329	0	ENST00000371998.3:c.3083C>A	p.Pro1028His	p.P1028H	ENST00000371998		1028	cCt/cAt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81925098	81925098	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs370697615		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	12	321	0	ENST00000359376.3:c.889C>T	p.Arg297Ter	p.R297*	ENST00000359376	NM_002661.3	297	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830330	72830330	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1464923115		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	13	510	0	ENST00000268489.5:c.6251C>T	p.Pro2084Leu	p.P2084L	ENST00000268489	NM_006885.3	2084	cCg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445438	49445438	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	32	629	0	ENST00000301067.7:c.2028G>T	p.Glu676Asp	p.E676D	ENST00000301067	NM_003482.3	676	gaG/gaT																																																																															
KLF5	688	MSKCC	GRCh37	13	73636065	73636065	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	58	385	0	ENST00000377687.4:c.332del	p.Lys111SerfsTer10	p.K111Sfs*10	ENST00000377687	NM_001730.3	110	Aaa/aa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539894	187539894	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371619837		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	11	468	2	ENST00000441802.2:c.7846G>A	p.Val2616Ile	p.V2616I	ENST00000441802	NM_005245.3	2616	Gtt/Att																																																																															
MGA	23269	MSKCC	GRCh37	15	42002897	42002897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	13	333	0	ENST00000219905.7:c.2434T>C	p.Ser812Pro	p.S812P	ENST00000219905	NM_001164273.1	812	Tca/Cca																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39623776	39623776	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	20	308	0	ENST00000262039.4:c.2183G>C	p.Ser728Thr	p.S728T	ENST00000262039	NM_002647.2	728	aGc/aCc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783974	50783974	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1451100613		P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	17	407	0	ENST00000398568.2:c.365G>A	p.Gly122Asp	p.G122D	ENST00000398568	NM_001042412.1	122	gGc/gAc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798085	45798085	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	28	542	0	ENST00000372115.3:c.724A>G	p.Thr242Ala	p.T242A	ENST00000372115	NM_001048171.1	242	Acc/Gcc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29280046	29280046	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0070215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	25	448	0	ENST00000544604.2:c.292A>T	p.Ile98Phe	p.I98F	ENST00000544604	NM_001206998.1	98	Atc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0070216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	62	669	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101008	41101008	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068700-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	137	321	1	ENST00000373198.4:c.1348C>T	p.Arg450Ter	p.R450*	ENST00000373198	NM_133170.3	450	Cga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111497	8111498	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGGAGGAATGCC			P-0068700-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	110	312	0	ENST00000346208.3:c.984_996dup	p.Asn333GlufsTer23	p.N333Efs*23	ENST00000346208		328	tgg/tgGAGGAGGAATGCCg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27059278	27059278	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068700-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	129	228	0	ENST00000324856.7:c.1915T>G	p.Leu639Val	p.L639V	ENST00000324856	NM_006015.4	639	Ttg/Gtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0068704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	7204	452	2	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0068704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	6446	386	3	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0068704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	169	411	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332882	153332882	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0068704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	52	401	0	ENST00000281708.4:c.74C>G	p.Ser25Ter	p.S25*	ENST00000281708	NM_033632.3	25	tCa/tGa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101910003	101910003	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	25	374	0	ENST00000374994.4:c.1323G>C	p.Met441Ile	p.M441I	ENST00000374994	NM_004612.2	441	atG/atC																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229363	36229363	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1041	77	520	0	ENST00000222270.7:c.8053G>T	p.Glu2685Ter	p.E2685*	ENST00000222270	NM_014727.1	2685	Gag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103767	47103767	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745410359		P-0068704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	72	421	0	ENST00000409792.3:c.6179C>T	p.Ser2060Leu	p.S2060L	ENST00000409792	NM_014159.6	2060	tCa/tTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55266538	55266538	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	6469	314	3	ENST00000275493.2:c.2830T>G	p.Tyr944Asp	p.Y944D	ENST00000275493	NM_005228.3	944	Tac/Gac																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472535	88472535	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	54	481	0	ENST00000360948.2:c.2020C>A	p.His674Asn	p.H674N	ENST00000360948	NM_001012338.2	674	Cac/Aac																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53225142	53225142	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	70	454	0	ENST00000375401.3:c.3076C>G	p.Leu1026Val	p.L1026V	ENST00000375401	NM_004187.3	1026	Ctt/Gtt																																																																															
PARK2	5071	MSKCC	GRCh37	6	161771199	161771199	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs772592654		P-0068704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	41	322	0	ENST00000366898.1:c.1330G>C	p.Glu444Gln	p.E444Q	ENST00000366898	NM_004562.2	444	Gag/Cag																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139815609	139815609	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	69	434	0	ENST00000247668.2:c.1080C>A	p.Asp360Glu	p.D360E	ENST00000247668	NM_021138.3	360	gaC/gaA																																																																															
FANCA	2175	MSKCC	GRCh37	16	89865588	89865588	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs767288683		P-0068704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	85	449	0	ENST00000389301.3:c.879G>C	p.Lys293Asn	p.K293N	ENST00000389301	NM_000135.2	293	aaG/aaC																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946450	2946450	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	54	421	0	ENST00000396946.4:c.3287A>G	p.Glu1096Gly	p.E1096G	ENST00000396946	NM_032415.4	1096	gAg/gGg																																																																															
SUFU	51684	MSKCC	GRCh37	10	104309764	104309764	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	64	345	0	ENST00000369902.3:c.355G>C	p.Glu119Gln	p.E119Q	ENST00000369902	NM_016169.3	119	Gag/Cag																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47606984	47606984	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	46	405	0	ENST00000263735.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000263735	NM_002354.2	245	gGt/gTt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344414	118344414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	116	410	0	ENST00000534358.1:c.2540G>A	p.Arg847Lys	p.R847K	ENST00000534358	NM_005933.3	847	aGa/aAa																																																																															
ATM	472	MSKCC	GRCh37	11	108224491	108224491	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0068704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	81	295	0	ENST00000278616.4:c.8672-2A>C		p.X2891_splice	ENST00000278616	NM_000051.3	2891																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0068705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	220	376	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
STK11	6794	MSKCC	GRCh37	19	1218415	1218415	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0068705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	225	341	0	ENST00000326873.7:c.291-1G>T		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																																
NPM1	4869	MSKCC	GRCh37	5	170819954	170819968	+	inframe_deletion	In_Frame_Del	DEL	GATGATGATGAAGAG	GATGATGATGAAGAG	-	rs764077801		P-0068705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	182	309	0	ENST00000296930.5:c.511_524+1del		p.DDDEEdel	ENST00000296930	NM_002520.6	166	GATGATGATGAAGAG/-																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843501	3843501	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	217	434	0	ENST00000262367.5:c.1102C>T	p.Gln368Ter	p.Q368*	ENST00000262367	NM_004380.2	368	Cag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098380	11098380	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	221	434	0	ENST00000344626.4:c.898C>T	p.Gln300Ter	p.Q300*	ENST00000344626	NM_003072.3	300	Cag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097266	11097266	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1210836682		P-0068705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	209	416	0	ENST00000344626.4:c.757C>T	p.His253Tyr	p.H253Y	ENST00000344626	NM_003072.3	253	Cat/Tat																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101917	11101917	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	251	524	0	ENST00000344626.4:c.1337C>G	p.Ser446Cys	p.S446C	ENST00000344626	NM_003072.3	446	tCc/tGc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679450	30679450	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	35	329	0	ENST00000376406.3:c.2122C>G	p.Leu708Val	p.L708V	ENST00000376406	NM_014641.2	708	Ctg/Gtg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610488	10610504	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGCTGAGCCGCAGCT	CTGGCTGAGCCGCAGCT	-			P-0068705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	267	415	0	ENST00000171111.5:c.206_222del	p.Glu69AlafsTer4	p.E69Afs*4	ENST00000171111	NM_203500.1	69	gAGCTGCGGCTCAGCCAG/g																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144447	11144447	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	142	290	0	ENST00000344626.4:c.3779G>C	p.Arg1260Thr	p.R1260T	ENST00000344626	NM_003072.3	1260	aGa/aCa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097186	11097186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	256	484	0	ENST00000344626.4:c.677C>T	p.Ser226Phe	p.S226F	ENST00000344626	NM_003072.3	226	tCc/tTc																																																																															
CTR9	9646	MSKCC	GRCh37	11	10785313	10785313	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	107	389	0	ENST00000361367.2:c.1081T>G	p.Ser361Ala	p.S361A	ENST00000361367	NM_014633.3	361	Tct/Gct																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11114057	11114057	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060502104		P-0068705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	188	297	0	ENST00000344626.4:c.1985C>T	p.Ser662Leu	p.S662L	ENST00000344626	NM_003072.3	662	tCa/tTa																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66511586	66511586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs886041228		P-0068705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	202	346	0	ENST00000358598.2:c.46C>T	p.Arg16Ter	p.R16*	ENST00000358598	NM_212471.2	16	Cga/Tga																																																																															
CTR9	9646	MSKCC	GRCh37	11	10785008	10785276	+	splice_donor_variant,splice_acceptor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	CATGCATTCCATAATACAGAAGTGGAAGCTATGCAAGCAGAGAGCTGCTATCAGCTAGCTAGATCATTCCATGTTCAGGTAATTTTATAACTTCTCTAAATGTCTAATCTTTTTACTTATAGTGTTTTAAGTCTTTCCAATACTTTTGTACATATTGGTCTTTTTTAATTTTCATTCTTTAGGAAGATTATGACCAAGCTTTTCAGTACTATTATCAAGCCACACAGTTTGCCTCATCCTCTTTTGTGCTCCCATTTTTTGGTTTGGGA	CATGCATTCCATAATACAGAAGTGGAAGCTATGCAAGCAGAGAGCTGCTATCAGCTAGCTAGATCATTCCATGTTCAGGTAATTTTATAACTTCTCTAAATGTCTAATCTTTTTACTTATAGTGTTTTAAGTCTTTCCAATACTTTTGTACATATTGGTCTTTTTTAATTTTCATTCTTTAGGAAGATTATGACCAAGCTTTTCAGTACTATTATCAAGCCACACAGTTTGCCTCATCCTCTTTTGTGCTCCCATTTTTTGGTTTGGGA	-			P-0068705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	88	365	0	ENST00000361367.2:c.882_1046del		p.X294_splice	ENST00000361367	NM_014633.3	294	CATGCATTCCATAATACAGAAGTGGAAGCTATGCAAGCAGAGAGCTGCTATCAGCTAGCTAGATCATTCCATGTTCAGGTAATTTTATAACTTCTCTAAATGTCTAATCTTTTTACTTATAGTGTTTTAAGTCTTTCCAATACTTTTGTACATATTGGTCTTTTTTAATTTTCATTCTTTAGGAAGATTATGACCAAGCTTTTCAGTACTATTATCAAGCCACACAGTTTGCCTCATCCTCTTTTGTGCTCCCATTTTTTGGTTTGGGA/-																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097617	11097617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	247	426	0	ENST00000344626.4:c.797C>G	p.Ser266Trp	p.S266W	ENST00000344626	NM_003072.3	266	tCg/tGg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096933	11096934	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0068705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	234	469	0	ENST00000344626.4:c.424_425delinsTT	p.Gly142Leu	p.G142L	ENST00000344626	NM_003072.3	142	GGg/TTg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742928	17742928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	101	410	0	ENST00000250003.3:c.836C>A	p.Pro279His	p.P279H	ENST00000250003	NM_002478.4	279	cCt/cAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29661904	29661904	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	212	343	0	ENST00000358273.4:c.5861C>A	p.Ser1954Ter	p.S1954*	ENST00000358273	NM_001042492.2	1954	tCa/tAa																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001414	29001414	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	158	413	1	ENST00000282397.4:c.1318G>T	p.Asp440Tyr	p.D440Y	ENST00000282397	NM_002019.4	440	Gac/Tac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096933	11096933	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	234	467	0	ENST00000344626.4:c.424G>T	p.Gly142Trp	p.G142W	ENST00000344626	NM_003072.3	142	Ggg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0068729-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	167	455	0	ENST00000269305.4:c.497C>G	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tGa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86628313	86628328	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTTCAAATAGGATTA	TGTTCAAATAGGATTA	-			P-0068729-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	62	256	0	ENST00000274376.6:c.693-10_698del		p.X231_splice	ENST00000274376	NM_002890.2	231																																																																																
NF1	4763	MSKCC	GRCh37	17	29667664	29667664	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0068729-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	95	243	0	ENST00000358273.4:c.7062+1G>T		p.X2354_splice	ENST00000358273	NM_001042492.2	2354																																																																																
PIK3CD	5293	MSKCC	GRCh37	1	9775990	9775990	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138463758		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	183	423	0	ENST00000377346.4:c.454G>A	p.Ala152Thr	p.A152T	ENST00000377346	NM_005026.3	152	Gcc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101612	27101612	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	170	470	0	ENST00000324856.7:c.4899del	p.Met1634Ter	p.M1634*	ENST00000324856	NM_006015.4	1632	Ccc/cc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	183	437	2	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115269008	115269008	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	125	291	0	ENST00000438362.2:c.1603-1G>T		p.X535_splice	ENST00000438362	NM_001242891.1	535																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120480570	120480570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			725	41	383	0	ENST00000256646.2:c.3247G>A	p.Ala1083Thr	p.A1083T	ENST00000256646	NM_024408.3	1083	Gca/Aca																																																																															
TET1	80312	MSKCC	GRCh37	10	70332272	70332273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1446158817		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	143	376	0	ENST00000373644.4:c.184dup	p.Thr62AsnfsTer4	p.T62Nfs*4	ENST00000373644	NM_030625.2	59	-/A																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	139	379	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	47	134	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112764487	112764487	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	145	329	0	ENST00000369452.4:c.1096C>T	p.Arg366Ter	p.R366*	ENST00000369452	NM_007373.3	366	Cga/Tga																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154242	2154242	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1388678905		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	158	469	1	ENST00000434045.2:c.686del	p.Pro229GlnfsTer27	p.P229Qfs*27	ENST00000434045	NM_001127598.1	229	cCa/ca																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594882	47594883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs756343868		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	176	478	0	ENST00000395288.2:c.1156dup	p.Glu386GlyfsTer4	p.E386Gfs*4	ENST00000395288	NM_016506.5	386	gag/gGag																																																																															
ATM	472	MSKCC	GRCh37	11	108160516	108160516	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs34640941		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	158	366	0	ENST00000278616.4:c.4424A>G	p.Tyr1475Cys	p.Y1475C	ENST00000278616	NM_000051.3	1475	tAt/tGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420203	49420204	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	198	434	0	ENST00000301067.7:c.15545dup	p.Leu5183ProfsTer16	p.L5183Pfs*16	ENST00000301067	NM_003482.3	5182	ggc/ggGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	175	453	0	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																																																															
RAB35	11021	MSKCC	GRCh37	12	120536740	120536740	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	200	475	0	ENST00000229340.5:c.353-1G>A		p.X118_splice	ENST00000229340	NM_006861.6	118																																																																																
FLT1	2321	MSKCC	GRCh37	13	29001410	29001410	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771714708		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	144	363	0	ENST00000282397.4:c.1322C>T	p.Pro441Leu	p.P441L	ENST00000282397	NM_002019.4	441	cCg/cTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42034837	42034837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			773	108	425	0	ENST00000219905.7:c.4681del	p.Thr1561ProfsTer15	p.T1561Pfs*15	ENST00000219905	NM_001164273.1	1560	cAa/ca																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576177	88576177	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	138	407	0	ENST00000360948.2:c.1496A>G	p.Asp499Gly	p.D499G	ENST00000360948	NM_001012338.2	499	gAc/gGc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	186	513	4	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348211	348211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1458136153		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	149	452	1	ENST00000262320.3:c.1295del	p.Pro432GlnfsTer48	p.P432Qfs*48	ENST00000262320	NM_003502.3	432	cCa/ca																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274013	10274013	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758742694		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	170	437	0	ENST00000330684.3:c.256G>A	p.Val86Met	p.V86M	ENST00000330684	NM_001134407.1	86	Gtg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	153	428	2	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362446	40362447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1202978138		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	111	353	0	ENST00000293328.3:c.1749dup	p.His584ThrfsTer8	p.H584Tfs*8	ENST00000293328	NM_012448.3	583	-/A																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	211	526	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
CARM1	10498	MSKCC	GRCh37	19	11015633	11015634	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	142	348	0	ENST00000327064.4:c.235_236dup	p.Phe80SerfsTer46	p.F80Sfs*46	ENST00000327064	NM_199141.1	76	gat/gaTGt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353819	15353819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	67	203	0	ENST00000263377.2:c.3061del	p.His1021IlefsTer47	p.H1021Ifs*47	ENST00000263377	NM_058243.2	1021	Cat/at																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354151	15354152	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	52	300	0	ENST00000263377.2:c.2728dup	p.Gln910ProfsTer7	p.Q910Pfs*7	ENST00000263377	NM_058243.2	910	caa/cCaa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17950344	17950344	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	183	409	0	ENST00000458235.1:c.1383del	p.Leu462CysfsTer3	p.L462Cfs*3	ENST00000458235	NM_000215.3	461	ggG/gg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210893	36210893	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			724	102	432	0	ENST00000222270.7:c.649del	p.Arg217GlyfsTer22	p.R217Gfs*22	ENST00000222270	NM_014727.1	215	aCc/ac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	185	480	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	196	464	0	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
CIC	23152	MSKCC	GRCh37	19	42797806	42797807	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	165	478	0	ENST00000575354.2:c.3862dup	p.Glu1288GlyfsTer56	p.E1288Gfs*56	ENST00000575354	NM_015125.3	1286	-/G																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630430	47630430	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793541		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			903	48	339	0	ENST00000233146.2:c.100G>A	p.Val34Met	p.V34M	ENST00000233146	NM_000251.2	34	Gtg/Atg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266477	198266477	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	119	341	0	ENST00000335508.6:c.2359del	p.Ile787LeufsTer3	p.I787Lfs*3	ENST00000335508	NM_012433.2	787	Att/tt																																																																															
CASP8	841	MSKCC	GRCh37	2	202151253	202151254	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	311	366	0	ENST00000358485.4:c.1557dup	p.Lys520GlufsTer19	p.K520Efs*19	ENST00000358485	NM_001080125.1	518	atg/atGg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	241	449	1	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980814	40980814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	169	383	0	ENST00000373198.4:c.1672C>A	p.Pro558Thr	p.P558T	ENST00000373198	NM_133170.3	558	Cca/Aca																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	335	397	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103754	47103755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC	rs749901643		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	171	432	0	ENST00000409792.3:c.6190_6191dup	p.Asp2064GlufsTer84	p.D2064Efs*84	ENST00000409792	NM_014159.6	2064	gac/gaGAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178937423	178937423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			91	36	93	0	ENST00000263967.3:c.1811G>A	p.Cys604Tyr	p.C604Y	ENST00000263967	NM_006218.2	604	tGt/tAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	78	308	1	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31464435	31464435	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1471632102		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	120	361	1	ENST00000344624.3:c.2482del	p.Ile828TyrfsTer7	p.I828Yfs*7	ENST00000344624		828	Ata/ta																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	305	320	8	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672638	30672638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			801	242	546	0	ENST00000376406.3:c.4322C>T	p.Ser1441Phe	p.S1441F	ENST00000376406	NM_014641.2	1441	tCt/tTt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	147	338	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	123	343	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
SMO	6608	MSKCC	GRCh37	7	128846357	128846357	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760560948		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	183	416	1	ENST00000249373.3:c.1193G>A	p.Arg398Gln	p.R398Q	ENST00000249373	NM_005631.4	398	cGa/cAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	141	300	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	148	507	0	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98268792	98268793	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	152	388	1	ENST00000331920.6:c.290dup	p.Asn97LysfsTer43	p.N97Kfs*43	ENST00000331920	NM_000264.3	97	aac/aaAc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	109	292	3	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			83	47	124	0	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324886	31324887	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs760037174		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	42	290	0	ENST00000412585.2:c.49_50insG	p.Leu17ArgfsTer82	p.L17Rfs*82	ENST00000412585	NM_005514.6	17	ctg/cGtg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260566	16260566	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	190	418	0	ENST00000375759.3:c.7831G>T	p.Ala2611Ser	p.A2611S	ENST00000375759	NM_015001.2	2611	Gct/Tct																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598222	28598223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	169	378	0	ENST00000253063.3:c.198dup	p.Leu67AlafsTer22	p.L67Afs*22	ENST00000253063	NM_031459.4	65	ctg/ctGg																																																																															
PARP1	142	MSKCC	GRCh37	1	226589983	226589983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	191	438	0	ENST00000366794.5:c.218G>T	p.Gly73Val	p.G73V	ENST00000366794	NM_001618.3	73	gGg/gTg																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246021944	246021944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	125	353	0	ENST00000388985.4:c.930G>T	p.Gln310His	p.Q310H	ENST00000388985		310	caG/caT																																																																															
APLNR	187	MSKCC	GRCh37	11	57004456	57004456	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	T	T	C			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	166	394	0	ENST00000257254.3:c.23A>G	p.Asp8Gly	p.D8G	ENST00000257254		8	gAc/gGc																																																																															
ATM	472	MSKCC	GRCh37	11	108158359	108158359	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	121	317	0	ENST00000278616.4:c.4026G>T	p.Glu1342Asp	p.E1342D	ENST00000278616	NM_000051.3	1342	gaG/gaT																																																																															
ATM	472	MSKCC	GRCh37	11	108236108	108236108	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	167	403	0	ENST00000278616.4:c.9044A>G	p.Glu3015Gly	p.E3015G	ENST00000278616	NM_000051.3	3015	gAg/gGg																																																																															
POLE	5426	MSKCC	GRCh37	12	133240589	133240589	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	33	345	0	ENST00000320574.5:c.2706+1G>A		p.X902_splice	ENST00000320574	NM_006231.2	902																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38061769	38061770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	224	472	0	ENST00000250448.2:c.219_220insT	p.Gly74TrpfsTer153	p.G74Wfs*153	ENST00000250448	NM_004496.3	73	-/T																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609513	81609513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	174	473	4	ENST00000298171.2:c.1115del	p.Asn372ThrfsTer40	p.N372Tfs*40	ENST00000298171	NM_000369.2	371	Aaa/aa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95593052	95593052	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	140	326	0	ENST00000343455.3:c.768T>A	p.Asp256Glu	p.D256E	ENST00000343455	NM_177438.2	256	gaT/gaA																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799514	88799514	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1233002788		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	20	88	0	ENST00000360948.2:c.-16+1G>A		p.X6_splice	ENST00000360948	NM_001012338.2	6																																																																																
IGF1R	3480	MSKCC	GRCh37	15	99467147	99467147	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	150	341	0	ENST00000268035.6:c.2528G>T	p.Arg843Met	p.R843M	ENST00000268035	NM_000875.3	843	aGg/aTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348989	89348989	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	194	460	0	ENST00000301030.4:c.3961C>A	p.Leu1321Met	p.L1321M	ENST00000301030	NM_001256183.1	1321	Ctg/Atg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8113541	8113541	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1226752309		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	126	308	0	ENST00000585124.1:c.2T>C	p.Met1?	p.M1?	ENST00000585124	NM_004217.3	1	aTg/aCg																																																																															
NF1	4763	MSKCC	GRCh37	17	29496973	29496973	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	53	214	0	ENST00000358273.4:c.544T>C	p.Tyr182His	p.Y182H	ENST00000358273	NM_001042492.2	182	Tat/Cat																																																																															
STAT3	6774	MSKCC	GRCh37	17	40478186	40478186	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	99	215	0	ENST00000264657.5:c.1313T>C	p.Leu438Pro	p.L438P	ENST00000264657	NM_139276.2	438	cTg/cCg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438176	56438177	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	150	420	0	ENST00000407977.2:c.816_817del	p.Ala273HisfsTer8	p.A273Hfs*8	ENST00000407977		272	tgTGcc/tgcc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18971726	18971726	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	169	365	0	ENST00000262803.5:c.2392G>T	p.Gly798Cys	p.G798C	ENST00000262803	NM_002911.3	798	Ggc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222817	36222817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	157	366	0	ENST00000222270.7:c.5446G>T	p.Gly1816Cys	p.G1816C	ENST00000222270	NM_014727.1	1816	Ggt/Tgt																																																																															
INHA	3623	MSKCC	GRCh37	2	220440090	220440090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	324	361	1	ENST00000243786.2:c.943G>A	p.Ala315Thr	p.A315T	ENST00000243786	NM_002191.3	315	Gcc/Acc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62292821	62292822	+	inframe_insertion,NMD_transcript_variant	In_Frame_Ins	INS	-	-	GCT	rs1319920036		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	126	382	0	ENST00000482936.1:c.287_289dup	p.Ala96dup	p.A96dup	ENST00000482936		96	-/GCT																																																																															
ERG	2078	MSKCC	GRCh37	21	39755808	39755808	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	154	356	0	ENST00000288319.7:c.957G>T	p.Glu319Asp	p.E319D	ENST00000288319	NM_182918.3	319	gaG/gaT																																																																															
NF2	4771	MSKCC	GRCh37	22	30067907	30067907	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	182	380	0	ENST00000338641.4:c.1092A>C	p.Lys364Asn	p.K364N	ENST00000338641	NM_000268.3	364	aaA/aaC																																																																															
RAF1	5894	MSKCC	GRCh37	3	12632312	12632312	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs555781462		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	142	378	0	ENST00000251849.4:c.1355C>T	p.Thr452Met	p.T452M	ENST00000251849	NM_002880.3	452	aCg/aTg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651278	52651278	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	182	358	0	ENST00000394830.3:c.1818G>T	p.Gln606His	p.Q606H	ENST00000394830	NM_018313.4	606	caG/caT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361220	66361220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	139	428	0	ENST00000273854.3:c.952A>G	p.Ser318Gly	p.S318G	ENST00000273854	NM_004439.5	318	Agc/Ggc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629927	187629927	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			718	118	480	0	ENST00000441802.2:c.1055T>C	p.Val352Ala	p.V352A	ENST00000441802	NM_005245.3	352	gTc/gCc																																																																															
APC	324	MSKCC	GRCh37	5	112179188	112179188	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	145	393	0	ENST00000257430.4:c.7897G>T	p.Gly2633Cys	p.G2633C	ENST00000257430	NM_000038.5	2633	Ggt/Tgt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149456895	149456895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	218	478	1	ENST00000286301.3:c.833G>A	p.Cys278Tyr	p.C278Y	ENST00000286301	NM_005211.3	278	tGc/tAc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911081	29911082	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	114	404	0	ENST00000376809.5:c.384dup	p.Ser129ValfsTer48	p.S129Vfs*48	ENST00000376809	NM_002116.7	127	gtg/gtGg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485264	8485264	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	134	327	0	ENST00000356435.5:c.3116A>G	p.Glu1039Gly	p.E1039G	ENST00000356435		1039	gAg/gGg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98220420	98220421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	122	409	0	ENST00000331920.6:c.3042dup	p.Phe1015LeufsTer130	p.F1015Lfs*130	ENST00000331920	NM_000264.3	1014	-/C																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399317	139399317	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	43	406	0	ENST00000277541.6:c.4826A>G	p.Asp1609Gly	p.D1609G	ENST00000277541	NM_017617.3	1609	gAc/gGc																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139566462	139566462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	146	332	0	ENST00000308874.7:c.721G>A	p.Val241Met	p.V241M	ENST00000308874		241	Gtg/Atg																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321407	1321407	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs1426083675		P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	144	326	0	ENST00000381566.1:c.350-2A>G		p.X117_splice	ENST00000381566		117																																																																																
AMER1	139285	MSKCC	GRCh37	X	63410479	63410480	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	161	219	0	ENST00000330258.3:c.2687_2688del	p.Leu896ArgfsTer23	p.L896Rfs*23	ENST00000330258	NM_152424.3	896	cTC/c																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410619	63410619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	42	206	0	ENST00000330258.3:c.2548G>A	p.Ala850Thr	p.A850T	ENST00000330258	NM_152424.3	850	Gcc/Acc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	127	340	1	ENST00000347630.2:c.397T>C	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	Ttc/Ctc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1292426539		P-0068737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	119	426	0	ENST00000250448.2:c.781C>G	p.Arg261Gly	p.R261G	ENST00000250448	NM_004496.3	261	Cgc/Ggc																																																																															
CDH1	999	MSKCC	GRCh37	16	68863677	68863677	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	139	306	0	ENST00000261769.5:c.2416G>T	p.Glu806Ter	p.E806*	ENST00000261769	NM_004360.3	806	Gaa/Taa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115733	8115733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	103	418	0	ENST00000346208.3:c.1079G>A	p.Gly360Asp	p.G360D	ENST00000346208		360	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	239	485	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551393	150551394	+	missense_variant	Missense_Mutation	DNP	GT	GT	AA			P-0068740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	270	431	0	ENST00000369026.2:c.613_614delinsTT	p.Thr205Phe	p.T205F	ENST00000369026	NM_021960.4	205	ACc/TTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138550	11138550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	224	448	0	ENST00000344626.4:c.3306C>A	p.Phe1102Leu	p.F1102L	ENST00000344626	NM_003072.3	1102	ttC/ttA																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626973	14626973	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	318	506	0	ENST00000254322.2:c.802G>T	p.Gly268Cys	p.G268C	ENST00000254322	NM_006145.1	268	Ggc/Tgc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134955	2134955	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	285	432	0	ENST00000219476.3:c.4497C>A	p.Phe1499Leu	p.F1499L	ENST00000219476	NM_000548.3	1499	ttC/ttA																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289501	33289501	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	233	361	0	ENST00000374542.5:c.202G>T	p.Glu68Ter	p.E68*	ENST00000374542	NM_001141970.1	68	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0068789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			416	122	511	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0068789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	123	368	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426722	212426722	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			459	113	479	0	ENST00000342788.4:c.2393T>G	p.Leu798Arg	p.L798R	ENST00000342788	NM_005235.2	798	cTt/cGt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696597	47696597	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0068789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	86	393	0	ENST00000347630.2:c.351G>T	p.Met117Ile	p.M117I	ENST00000347630	NM_001007230.1	117	atG/atT																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925314	114925314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0068789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	84	315	0	ENST00000543371.1:c.1392G>C	p.Arg464Ser	p.R464S	ENST00000543371	NM_001198531.1	464	agG/agC																																																																															
BTK	695	MSKCC	GRCh37	X	100609665	100609668	+	frameshift_variant	Frame_Shift_Del	DEL	CAAA	CAAA	-			P-0068789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	25	334	0	ENST00000308731.7:c.1581_1584del	p.Cys527TrpfsTer2	p.C527Wfs*2	ENST00000308731	NM_000061.2	527	tgTTTG/tg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602679	10602680	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	AGTC			P-0068789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			453	117	523	0	ENST00000171111.5:c.895_898dup	p.Tyr300Ter	p.Y300*	ENST00000171111	NM_203500.1	300	tac/tGACTac																																																																															
NF1	4763	MSKCC	GRCh37	17	29665150	29665150	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			261	34	291	0	ENST00000358273.4:c.6812T>A	p.Leu2271His	p.L2271H	ENST00000358273	NM_001042492.2	2271	cTt/cAt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741669	145741671	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0068789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			474	81	573	0	ENST00000428558.2:c.832_834del	p.Glu278del	p.E278del	ENST00000428558	NM_004260.3	278	GAG/-																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151868391	151868391	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			335	40	357	0	ENST00000262189.6:c.9411G>C	p.Gln3137His	p.Q3137H	ENST00000262189	NM_170606.2	3137	caG/caC																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987106	36987107	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0068789-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			302	82	449	0	ENST00000354822.5:c.581_582dup	p.Arg195AlafsTer34	p.R195Afs*34	ENST00000354822	NM_001079668.2	194	-/GC																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913396		P-0068790-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			273	38	310	0	ENST00000349496.5:c.95A>T	p.Asp32Val	p.D32V	ENST00000349496	NM_001904.3	32	gAc/gTc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0068790-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			215	14	226	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
ATM	472	MSKCC	GRCh37	11	108236203	108236203	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121434219		P-0068790-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			233	50	293	0	ENST00000278616.4:c.9139C>T	p.Arg3047Ter	p.R3047*	ENST00000278616	NM_000051.3	3047	Cga/Tga																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246315	46246315	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068790-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	59	345	0	ENST00000334344.6:c.4409C>A	p.Ser1470Ter	p.S1470*	ENST00000334344	NM_152641.2	1470	tCa/tAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0068790-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			173	25	197	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49927364	49927364	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068790-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			303	42	353	0	ENST00000296474.3:c.3940G>T	p.Asp1314Tyr	p.D1314Y	ENST00000296474	NM_002447.2	1314	Gat/Tat																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32189006	32189006	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068790-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			367	83	357	0	ENST00000375023.3:c.548C>A	p.Pro183Gln	p.P183Q	ENST00000375023	NM_004557.3	183	cCa/cAa																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001901	29001901	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068790-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			191	16	229	0	ENST00000282397.4:c.1264C>A	p.Leu422Ile	p.L422I	ENST00000282397	NM_002019.4	422	Cta/Ata																																																																															
MALT1	10892	MSKCC	GRCh37	18	56376703	56376703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068790-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			220	23	249	0	ENST00000348428.3:c.743G>A	p.Cys248Tyr	p.C248Y	ENST00000348428	NM_006785.3	248	tGt/tAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	133	421	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18446900	18446900	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			466	441	306	0	ENST00000266497.5:c.985C>A	p.Pro329Thr	p.P329T	ENST00000266497		329	Ccc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			350	382	331	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912660		P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			171	359	526	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45860764	45860764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			576	201	612	1	ENST00000391945.4:c.1345G>A	p.Glu449Lys	p.E449K	ENST00000391945	NM_000400.3	449	Gag/Aag																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1961451	1961451	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1162500705		P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			529	154	476	0	ENST00000382895.3:c.3239A>G	p.Lys1080Arg	p.K1080R	ENST00000382895	NM_133330.2	1080	aAg/aGg																																																																															
MET	4233	MSKCC	GRCh37	7	116411645	116411645	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			883	193	534	1	ENST00000397752.3:c.2824T>C	p.Ser942Pro	p.S942P	ENST00000397752	NM_000245.2	942	Tca/Cca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913383		P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			210	420	626	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44896898	44896898	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			206	104	284	0	ENST00000377967.4:c.620-2A>T		p.X207_splice	ENST00000377967	NM_021140.2	207																																																																																
AMER1	139285	MSKCC	GRCh37	X	63412763	63412763	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	147	580	0	ENST00000330258.3:c.404G>T	p.Gly135Val	p.G135V	ENST00000330258	NM_152424.3	135	gGg/gTg																																																																															
AR	367	MSKCC	GRCh37	X	66941737	66941737	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			313	127	444	0	ENST00000374690.3:c.2381A>G	p.Glu794Gly	p.E794G	ENST00000374690	NM_000044.3	794	gAg/gGg																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699264	117699264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			303	190	423	0	ENST00000369458.3:c.377G>A	p.Gly126Asp	p.G126D	ENST00000369458	NM_024626.3	126	gGc/gAc																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150915155	150915155	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			181	638	483	0	ENST00000271640.5:c.664C>T	p.Gln222Ter	p.Q222*	ENST00000271640	NM_001145415.1	222	Cag/Tag																																																																															
PARP1	142	MSKCC	GRCh37	1	226552839	226552839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			693	174	504	0	ENST00000366794.5:c.2522G>T	p.Arg841Leu	p.R841L	ENST00000366794	NM_001618.3	841	cGt/cTt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63759859	63759859	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			321	179	452	0	ENST00000279873.7:c.512A>T	p.Glu171Val	p.E171V	ENST00000279873	NM_032199.2	171	gAg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49415882	49415882	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			893	224	503	0	ENST00000301067.7:c.16465G>T	p.Asp5489Tyr	p.D5489Y	ENST00000301067	NM_003482.3	5489	Gac/Tac																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437528	110437528	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			163	271	465	0	ENST00000375856.3:c.873G>T	p.Met291Ile	p.M291I	ENST00000375856	NM_003749.2	291	atG/atT																																																																															
BLM	641	MSKCC	GRCh37	15	91290677	91290677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			373	219	412	0	ENST00000355112.3:c.55A>T	p.Arg19Ter	p.R19*	ENST00000355112	NM_000057.2	19	Aga/Tga																																																																															
SLX4	84464	MSKCC	GRCh37	16	3634842	3634842	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs993431348		P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			366	323	487	0	ENST00000294008.3:c.4667C>T	p.Pro1556Leu	p.P1556L	ENST00000294008	NM_032444.2	1556	cCc/cTc																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222227	6222227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			534	187	645	0	ENST00000252674.7:c.1015G>A	p.Glu339Lys	p.E339K	ENST00000252674	NM_005934.3	339	Gag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097257	11097257	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			277	118	491	0	ENST00000344626.4:c.748A>T	p.Ser250Cys	p.S250C	ENST00000344626	NM_003072.3	250	Agc/Tgc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143994	11143994	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			183	317	520	0	ENST00000344626.4:c.3575G>T	p.Arg1192Leu	p.R1192L	ENST00000344626	NM_003072.3	1192	cGc/cTc																																																																															
CD79A	973	MSKCC	GRCh37	19	42385032	42385032	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	135	471	0	ENST00000221972.3:c.666G>C	p.Gln222His	p.Q222H	ENST00000221972	NM_021601.3	222	caG/caC																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965259	25965259	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			413	125	428	0	ENST00000435504.4:c.3947del	p.Leu1316CysfsTer8	p.L1316Cfs*8	ENST00000435504		1316	tTg/tg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41818332	41818332	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			539	210	758	1	ENST00000373198.4:c.42G>C	p.Arg14Ser	p.R14S	ENST00000373198	NM_133170.3	14	agG/agC																																																																															
NSD1	64324	MSKCC	GRCh37	5	176720993	176720993	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			165	385	602	0	ENST00000439151.2:c.6624T>A	p.Cys2208Ter	p.C2208*	ENST00000439151	NM_022455.4	2208	tgT/tgA																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047941	180047941	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	187	679	0	ENST00000261937.6:c.2234G>T	p.Arg745Leu	p.R745L	ENST00000261937	NM_182925.4	745	cGc/cTc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680278	30680278	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			622	542	532	0	ENST00000376406.3:c.1441del	p.Val481LeufsTer58	p.V481Lfs*58	ENST00000376406	NM_014641.2	481	Gtt/tt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341139	8341139	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			141	807	440	0	ENST00000356435.5:c.5077G>T	p.Gly1693Ter	p.G1693*	ENST00000356435		1693	Gga/Tga																																																																															
ARAF	369	MSKCC	GRCh37	X	47426468	47426468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			377	177	649	0	ENST00000377045.4:c.811C>A	p.His271Asn	p.H271N	ENST00000377045	NM_001654.4	271	Cat/Aat																																																																															
BTK	695	MSKCC	GRCh37	X	100608205	100608205	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068791-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	273	402	0	ENST00000308731.7:c.1885A>G	p.Ile629Val	p.I629V	ENST00000308731	NM_000061.2	629	Atc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0068797-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			179	118	640	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56871568	56871568	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750817566		P-0068797-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			195	166	491	0	ENST00000308159.5:c.1948G>A	p.Val650Ile	p.V650I	ENST00000308159	NM_014669.4	650	Gtc/Atc																																																																															
CASP8	841	MSKCC	GRCh37	2	202123044	202123044	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068797-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			568	126	541	0	ENST00000358485.4:c.90C>G	p.His30Gln	p.H30Q	ENST00000358485	NM_001080125.1	30	caC/caG																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594951	47594951	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068797-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			429	54	647	0	ENST00000395288.2:c.1088A>G	p.Gln363Arg	p.Q363R	ENST00000395288	NM_016506.5	363	cAg/cGg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39911451	39911451	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068797-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			171	11	273	0	ENST00000378444.4:c.5179del	p.Val1727TrpfsTer15	p.V1727Wfs*15	ENST00000378444	NM_001123385.1	1727	Gtg/tg																																																																															
NF1	4763	MSKCC	GRCh37	17	29528432	29528432	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068797-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			94	201	421	0	ENST00000358273.4:c.1189T>C	p.Cys397Arg	p.C397R	ENST00000358273	NM_001042492.2	397	Tgc/Cgc																																																																															
ATR	545	MSKCC	GRCh37	3	142280094	142280094	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068797-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			93	196	313	0	ENST00000350721.4:c.1340A>T	p.Gln447Leu	p.Q447L	ENST00000350721	NM_001184.3	447	cAg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0068806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	52	307	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0068806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	81	264	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441464	52441464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	65	427	0	ENST00000460680.1:c.388G>A	p.Ala130Thr	p.A130T	ENST00000460680	NM_004656.3	130	Gcg/Acg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52443611	52443616	+	inframe_deletion	In_Frame_Del	DEL	CACCCC	CACCCC	-			P-0068806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	57	394	0	ENST00000460680.1:c.76_81del	p.Gly26_Val27del	p.G26_V27del	ENST00000460680	NM_004656.3	26	GGGGTG/-																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38279328	38279328	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068806-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	110	386	0	ENST00000425967.3:c.1161G>C	p.Leu387Phe	p.L387F	ENST00000425967	NM_001174067.1	387	ttG/ttC																																																																															
CDH1	999	MSKCC	GRCh37	16	68862205	68862205	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs876658575		P-0068808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	15	256	0	ENST00000261769.5:c.2293C>T	p.Gln765Ter	p.Q765*	ENST00000261769	NM_004360.3	765	Cag/Tag																																																																															
CBFB	865	MSKCC	GRCh37	16	67063311	67063311	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0068808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	16	218	0	ENST00000412916.2:c.1A>G	p.Met1?	p.M1?	ENST00000412916		1	Atg/Gtg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111549	8111549	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	35	288	0	ENST00000346208.3:c.1035C>A	p.Tyr345Ter	p.Y345*	ENST00000346208		345	taC/taA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685269	89685269	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0068808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			58	18	190	0	ENST00000371953.3:c.165-1G>C		p.X55_splice	ENST00000371953	NM_000314.4	55																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27094365	27094368	+	frameshift_variant	Frame_Shift_Del	DEL	GACC	GACC	-			P-0068808-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	24	341	0	ENST00000324856.7:c.3074_3077del	p.Asp1025ValfsTer13	p.D1025Vfs*13	ENST00000324856	NM_006015.4	1025	GACCgt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121912666		P-0068811-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			294	185	515	0	ENST00000269305.4:c.659A>C	p.Tyr220Ser	p.Y220S	ENST00000269305	NM_001126112.2	220	tAt/tCt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710929	117710929	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374934137		P-0068811-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	184	415	1	ENST00000368508.3:c.1343G>A	p.Arg448His	p.R448H	ENST00000368508	NM_002944.2	448	cGt/cAt																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225701	26225701	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068811-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			649	67	588	0	ENST00000360408.1:c.319G>T	p.Asp107Tyr	p.D107Y	ENST00000360408	NM_003532.2	107	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7576865	7576865	+	stop_gained	Nonsense_Mutation	SNP	A	A	C	rs879254077		P-0068822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	138	430	0	ENST00000269305.4:c.981T>G	p.Tyr327Ter	p.Y327*	ENST00000269305	NM_001126112.2	327	taT/taG																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844404	156844404	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199826686		P-0068822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	62	512	0	ENST00000524377.1:c.1237G>A	p.Glu413Lys	p.E413K	ENST00000524377	NM_002529.3	413	Gaa/Aaa																																																																															
MST1	4485	MSKCC	GRCh37	3	49725223	49725223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			30	30	29	0	ENST00000449682.2:c.202G>A	p.Glu68Lys	p.E68K	ENST00000449682	NM_020998.3	68	Gaa/Aaa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011211	12011212	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0068822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	58	193	0	ENST00000353533.5:c.622dup	p.Ile208AsnfsTer37	p.I208Nfs*37	ENST00000353533	NM_003010.3	206	-/A																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47595293	47595293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780457703		P-0068822-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	47	307	0	ENST00000395288.2:c.746G>A	p.Arg249His	p.R249H	ENST00000395288	NM_016506.5	249	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0068826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	74	326	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs786201838		P-0068826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	63	557	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205672	128205672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068826-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	20	416	0	ENST00000341105.2:c.203C>T	p.Ala68Val	p.A68V	ENST00000341105	NM_032638.4	68	gCg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845366	151845366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068834-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			214	32	441	0	ENST00000262189.6:c.13646G>A	p.Arg4549His	p.R4549H	ENST00000262189	NM_170606.2	4549	cGc/cAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68772262	68772262	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0068834-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			95	117	381	0	ENST00000261769.5:c.111C>G	p.Tyr37Ter	p.Y37*	ENST00000261769	NM_004360.3	37	taC/taG																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118862	115118863	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0068834-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			365	255	427	0	ENST00000257566.3:c.478dup	p.Asp160GlyfsTer5	p.D160Gfs*5	ENST00000257566	NM_016569.3	160	gac/gGac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	61	287	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627361	37627361	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	110	343	0	ENST00000447079.4:c.1280del	p.Leu427CysfsTer9	p.L427Cfs*9	ENST00000447079	NM_015083.1	426	Ttt/tt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	70	302	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	89	427	3	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	73	396	1	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
RARA	5914	MSKCC	GRCh37	17	38510606	38510606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	72	338	0	ENST00000254066.5:c.860C>T	p.Ser287Leu	p.S287L	ENST00000254066	NM_000964.3	287	tCg/tTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	61	424	0	ENST00000575354.2:c.3743del	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																															
ALK	238	MSKCC	GRCh37	2	29445211	29445211	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	70	350	0	ENST00000389048.3:c.3514A>G	p.Ser1172Gly	p.S1172G	ENST00000389048	NM_004304.4	1172	Agc/Ggc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77069989	77069990	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAT	rs149665907		P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	64	350	0	ENST00000356341.3:c.548_550dup	p.Asp183dup	p.D183dup	ENST00000356341	NM_002576.4	183	gct/gATGct																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	78	472	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939260	71939260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	99	390	1	ENST00000298229.2:c.209G>A	p.Arg70His	p.R70H	ENST00000298229	NM_001567.3	70	cGc/cAc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	87	471	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
GNA11	2767	MSKCC	GRCh37	19	3119016	3119016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	81	401	0	ENST00000078429.4:c.700G>A	p.Glu234Lys	p.E234K	ENST00000078429	NM_002067.2	234	Gaa/Aaa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748660	43748661	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	82	378	0	ENST00000382044.4:c.2145dup	p.Glu716ArgfsTer9	p.E716Rfs*9	ENST00000382044	NM_001141980.1	715	-/A																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42851110	42851110	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	74	244	0	ENST00000398585.3:c.783del	p.Lys261AsnfsTer19	p.K261Nfs*19	ENST00000398585	NM_001135099.1	261	aaA/aa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214714	36214714	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	62	380	0	ENST00000222270.7:c.3145del	p.Ala1049ArgfsTer133	p.A1049Rfs*133	ENST00000222270	NM_014727.1	1047	cGg/cg																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73047240	73047240	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	67	248	0	ENST00000356692.5:c.51del	p.Lys19ArgfsTer14	p.K19Rfs*14	ENST00000356692		16	aGg/ag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517762	187517762	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	32	348	0	ENST00000441802.2:c.12932del	p.Pro4311HisfsTer38	p.P4311Hfs*38	ENST00000441802	NM_005245.3	4311	cCa/ca																																																																															
ATRX	546	MSKCC	GRCh37	X	76829819	76829819	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	50	247	0	ENST00000373344.5:c.6222G>T	p.Glu2074Asp	p.E2074D	ENST00000373344	NM_000489.3	2074	gaG/gaT																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	71	456	0	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11107184	11107186	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs1484395538		P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	92	320	0	ENST00000344626.4:c.1778_1780del	p.Glu593del	p.E593del	ENST00000344626	NM_003072.3	592	gcAGAa/gca																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225607	26225607	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	118	491	0	ENST00000360408.1:c.225A>G	p.Ile75Met	p.I75M	ENST00000360408	NM_003532.2	75	atA/atG																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150921733	150921733	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	89	415	0	ENST00000271640.5:c.1408del	p.Gln470LysfsTer18	p.Q470Kfs*18	ENST00000271640	NM_001145415.1	468	tCc/tc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557235	187557235	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	78	349	0	ENST00000441802.2:c.4127T>C	p.Met1376Thr	p.M1376T	ENST00000441802	NM_005245.3	1376	aTg/aCg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435323	56435323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	89	468	0	ENST00000407977.2:c.1814C>T	p.Ala605Val	p.A605V	ENST00000407977		605	gCc/gTc																																																																															
ATM	472	MSKCC	GRCh37	11	108164047	108164047	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	58	217	0	ENST00000278616.4:c.4619A>G	p.Asp1540Gly	p.D1540G	ENST00000278616	NM_000051.3	1540	gAc/gGc																																																																															
MET	4233	MSKCC	GRCh37	7	116423509	116423509	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	65	273	0	ENST00000397752.3:c.3784A>G	p.Thr1262Ala	p.T1262A	ENST00000397752	NM_000245.2	1262	Acc/Gcc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177637	56177638	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	61	382	0	ENST00000399503.3:c.2612dup	p.Leu871PhefsTer33	p.L871Ffs*33	ENST00000399503	NM_005921.1	870	-/T																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845768	151845768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	61	372	0	ENST00000262189.6:c.13244G>A	p.Gly4415Glu	p.G4415E	ENST00000262189	NM_170606.2	4415	gGa/gAa																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128246812	128246812	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	87	296	0	ENST00000265960.3:c.1117A>G	p.Thr373Ala	p.T373A	ENST00000265960	NM_001006617.1	373	Aca/Gca																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430300	181430300	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	33	215	0	ENST00000325404.1:c.152G>A	p.Trp51Ter	p.W51*	ENST00000325404	NM_003106.3	51	tGg/tAg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260531	16260531	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753076589		P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	122	397	0	ENST00000375759.3:c.7796C>T	p.Ser2599Leu	p.S2599L	ENST00000375759	NM_015001.2	2599	tCg/tTg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645457	67645457	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	91	336	0	ENST00000264010.4:c.722A>G	p.Asn241Ser	p.N241S	ENST00000264010	NM_006565.3	241	aAt/aGt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936092	71936092	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	41	346	0	ENST00000298229.2:c.64T>C	p.Tyr22His	p.Y22H	ENST00000298229	NM_001567.3	22	Tac/Cac																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138433452	138433452	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	97	275	0	ENST00000289153.2:c.1160T>C	p.Phe387Ser	p.F387S	ENST00000289153	NM_006219.2	387	tTt/tCt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123179024	123179024	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	63	233	0	ENST00000218089.9:c.473A>T	p.Asp158Val	p.D158V	ENST00000218089	NM_001042749.1	158	gAt/gTt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426733	121426733	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	63	470	0	ENST00000257555.6:c.424T>C	p.Ser142Pro	p.S142P	ENST00000257555		142	Tcc/Ccc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139815643	139815643	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	76	358	1	ENST00000247668.2:c.1114C>A	p.Arg372Ser	p.R372S	ENST00000247668	NM_021138.3	372	Cgc/Agc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31468148	31468148	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	75	285	0	ENST00000344624.3:c.2264A>T	p.Asp755Val	p.D755V	ENST00000344624		755	gAt/gTt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43720212	43720212	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	62	289	0	ENST00000382044.4:c.3828+2T>C		p.X1276_splice	ENST00000382044	NM_001141980.1	1276																																																																																
EGFR	1956	MSKCC	GRCh37	7	55220266	55220266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	55	291	0	ENST00000275493.2:c.656G>A	p.Cys219Tyr	p.C219Y	ENST00000275493	NM_005228.3	219	tGc/tAc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512364	149512364	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	110	446	0	ENST00000261799.4:c.1076A>G	p.Asp359Gly	p.D359G	ENST00000261799	NM_002609.3	359	gAc/gGc																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158470	26158470	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	89	384	0	ENST00000289316.2:c.73A>G	p.Lys25Glu	p.K25E	ENST00000289316	NM_138720.2	25	Aag/Gag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65304192	65304192	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	95	305	0	ENST00000342505.4:c.2923A>G	p.Ile975Val	p.I975V	ENST00000342505	NM_002227.2	975	Ata/Gta																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514493	103514493	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068850-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	87	351	0	ENST00000355739.4:c.994G>T	p.Glu332Ter	p.E332*	ENST00000355739	NM_000123.3	332	Gag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37882058	37882058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769262054		P-0068852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	84	419	0	ENST00000269571.5:c.2824C>T	p.Pro942Ser	p.P942S	ENST00000269571		942	Ccc/Tcc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912333	32912333	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	49	363	0	ENST00000380152.3:c.3844del	p.Thr1282LeufsTer2	p.T1282Lfs*2	ENST00000380152		1281	Aaa/aa																																																																															
IDH2	3418	MSKCC	GRCh37	15	90627556	90627568	+	frameshift_variant	Frame_Shift_Del	DEL	GTGTTCAGGAAGT	GTGTTCAGGAAGT	-			P-0068852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	99	485	0	ENST00000330062.3:c.1289_1301del	p.His430ProfsTer34	p.H430Pfs*34	ENST00000330062	NM_002168.2	430	cACTTCCTGAACACc/cc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436357	52436357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	93	534	0	ENST00000460680.1:c.2137C>T	p.Arg713Trp	p.R713W	ENST00000460680	NM_004656.3	713	Cgg/Tgg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061221	38061222	+	protein_altering_variant	In_Frame_Ins	INS	-	-	AAC			P-0068852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	153	561	0	ENST00000250448.2:c.767_768insGTT	p.Asn256delinsLysPhe	p.N256delinsKF	ENST00000250448	NM_004496.3	256	aac/aaGTTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16235812	16235856	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCAGCAGTGATTCCAGCAGTAGTTCAAGTGATGATTCTCCAGCTC	GCAGCAGTGATTCCAGCAGTAGTTCAAGTGATGATTCTCCAGCTC	-			P-0068897-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			584	102	409	0	ENST00000375759.3:c.882-3_923del		p.X294_splice	ENST00000375759	NM_015001.2	294																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0068899-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	236	243	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938442	44938450	+	inframe_deletion	In_Frame_Del	DEL	TGGTAGAAG	TGGTAGAAG	-			P-0068899-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			189	56	134	0	ENST00000377967.4:c.2992_3000del	p.Val998_Val1000del	p.V998_V1000del	ENST00000377967	NM_021140.2	997	aTGGTAGAAGtg/atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578270	7578271	+	missense_variant	Missense_Mutation	DNP	AT	AT	GC			P-0068899-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			623	134	500	0	ENST00000269305.4:c.578_579delinsGC	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAT/cGC																																																																															
JAK1	3716	MSKCC	GRCh37	1	65332608	65332608	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs904336241		P-0068899-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			615	63	412	0	ENST00000342505.4:c.931C>T	p.Leu311Phe	p.L311F	ENST00000342505	NM_002227.2	311	Ctc/Ttc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437677	49437677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068899-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1017	73	515	0	ENST00000301067.7:c.5293G>A	p.Glu1765Lys	p.E1765K	ENST00000301067	NM_003482.3	1765	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs770776262		P-0068902-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			102	420	515	2	ENST00000269305.4:c.321C>A	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taA																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156734	20156734	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068902-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	90	287	0	ENST00000379607.5:c.23G>C	p.Gly8Ala	p.G8A	ENST00000379607	NM_001412.3	8	gGa/gCa																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349230	11349230	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068902-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			704	414	468	1	ENST00000332029.2:c.106C>A	p.Pro36Thr	p.P36T	ENST00000332029	NM_003745.1	36	Ccc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0068917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	97	253	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0068917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	288	381	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94917661	94917661	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1405101705		P-0068917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	83	410	1	ENST00000536441.1:c.860G>A	p.Ser287Asn	p.S287N	ENST00000536441	NM_144665.3	287	aGc/aAc																																																																															
APC	324	MSKCC	GRCh37	5	112175193	112175194	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0068917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	131	424	3	ENST00000257430.4:c.3903_3904del	p.Leu1302AlafsTer12	p.L1302Afs*12	ENST00000257430	NM_000038.5	1301	aCC/a																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0068922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	126	359	0	ENST00000397752.3:c.3028+1G>A		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
PTCH1	5727	MSKCC	GRCh37	9	98218589	98218589	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	47	313	0	ENST00000331920.6:c.3275T>C	p.Ile1092Thr	p.I1092T	ENST00000331920	NM_000264.3	1092	aTa/aCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0068964-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	114	299	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244908	46244908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068964-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	88	449	0	ENST00000334344.6:c.3002C>T	p.Pro1001Leu	p.P1001L	ENST00000334344	NM_152641.2	1001	cCt/cTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045113	47045113	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0068964-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	153	423	0	ENST00000329236.7:c.2122-2A>T		p.X708_splice	ENST00000329236	NM_001204466.1	708																																																																																
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0068968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	132	244	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898533	63898533	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	142	312	0	ENST00000295900.6:c.260del	p.Pro87LeufsTer3	p.P87Lfs*3	ENST00000295900	NM_000333.3	87	Cct/ct																																																																															
ATR	545	MSKCC	GRCh37	3	142180872	142180872	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			54	128	216	0	ENST00000350721.4:c.7102A>T	p.Ile2368Phe	p.I2368F	ENST00000350721	NM_001184.3	2368	Att/Ttt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448600	89448600	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759973751		P-0068983-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	109	493	0	ENST00000336596.2:c.1564C>T	p.Arg522Cys	p.R522C	ENST00000336596	NM_005233.5	522	Cgc/Tgc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645714	12645714	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1457670031		P-0068983-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	235	446	1	ENST00000251849.4:c.755C>T	p.Ser252Phe	p.S252F	ENST00000251849	NM_002880.3	252	tCc/tTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1218423	1218423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068991-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			340	122	287	0	ENST00000326873.7:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000326873	NM_000455.4	100	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0068991-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			335	217	151	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2193777	2193777	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068991-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			414	147	270	0	ENST00000398665.3:c.583G>C	p.Ala195Pro	p.A195P	ENST00000398665	NM_032482.2	195	Gcg/Ccg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105575	11105575	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068991-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			493	152	280	0	ENST00000344626.4:c.1492del	p.Gln498ArgfsTer3	p.Q498Rfs*3	ENST00000344626	NM_003072.3	497	atC/at																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355111	15355111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068991-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			483	136	302	1	ENST00000263377.2:c.2512C>G	p.His838Asp	p.H838D	ENST00000263377	NM_058243.2	838	Cac/Gac																																																																															
BRAF	673	MSKCC	GRCh37	7	140500238	140500238	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068991-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			524	156	265	0	ENST00000288602.6:c.904C>G	p.Gln302Glu	p.Q302E	ENST00000288602	NM_004333.4	302	Cag/Gag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350849	89350849	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068991-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			428	33	236	1	ENST00000301030.4:c.2101A>G	p.Ser701Gly	p.S701G	ENST00000301030	NM_001256183.1	701	Agc/Ggc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0068993-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	58	246	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
HGF	3082	MSKCC	GRCh37	7	81388059	81388059	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068993-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			188	20	290	0	ENST00000222390.5:c.316A>G	p.Ser106Gly	p.S106G	ENST00000222390	NM_000601.4	106	Agt/Ggt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0068995-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			260	144	286	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
B2M	567	MSKCC	GRCh37	15	45007719	45007719	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068995-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			384	97	512	0	ENST00000558401.1:c.166G>T	p.Glu56Ter	p.E56*	ENST00000558401	NM_004048.2	56	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0068995-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			290	93	593	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
ALK	238	MSKCC	GRCh37	2	29446255	29446256	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0068995-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			369	42	545	0	ENST00000389048.3:c.3311_3312delinsAA	p.Ser1104Ter	p.S1104*	ENST00000389048	NM_004304.4	1104	tCC/tAA																																																																															
PPARG	5468	MSKCC	GRCh37	3	12393098	12393098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068995-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			302	126	397	0	ENST00000287820.6:c.7G>A	p.Glu3Lys	p.E3K	ENST00000287820	NM_015869.4	3	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0068995-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	64	224	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139789	55139789	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149031291		P-0068995-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			379	57	473	0	ENST00000257290.5:c.1450G>A	p.Val484Met	p.V484M	ENST00000257290	NM_006206.4	484	Gtg/Atg																																																																															
HGF	3082	MSKCC	GRCh37	7	81372699	81372699	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068995-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	32	413	0	ENST00000222390.5:c.835C>A	p.Arg279Ser	p.R279S	ENST00000222390	NM_000601.4	279	Cgc/Agc																																																																															
ABL1	25	MSKCC	GRCh37	9	133755923	133755923	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068995-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	35	465	0	ENST00000318560.5:c.1550G>T	p.Gly517Val	p.G517V	ENST00000318560	NM_005157.4	517	gGg/gTg																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154783	2154783	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068995-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			289	52	611	0	ENST00000434045.2:c.438del	p.Glu147ArgfsTer68	p.E147Rfs*68	ENST00000434045	NM_001127598.1	146	tcC/tc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936036	71936036	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068995-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			179	24	362	0	ENST00000298229.2:c.8C>A	p.Ser3Ter	p.S3*	ENST00000298229	NM_001567.3	3	tCg/tAg																																																																															
EED	8726	MSKCC	GRCh37	11	85988029	85988029	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068995-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	80	404	0	ENST00000263360.6:c.974A>G	p.Glu325Gly	p.E325G	ENST00000263360	NM_003797.3	325	gAa/gGa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50827483	50827483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068995-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			455	83	373	0	ENST00000398568.2:c.2368G>T	p.Gly790Trp	p.G790W	ENST00000398568	NM_001042412.1	790	Ggg/Tgg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259363	36259363	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068995-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			338	47	548	0	ENST00000300305.3:c.128C>G	p.Pro43Arg	p.P43R	ENST00000300305		43	cCt/cGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521118	187521118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1320492053		P-0068995-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			258	94	507	0	ENST00000441802.2:c.12037G>T	p.Ala4013Ser	p.A4013S	ENST00000441802	NM_005245.3	4013	Gcc/Tcc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874566	35874566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068995-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			606	82	417	0	ENST00000303115.3:c.722T>C	p.Ile241Thr	p.I241T	ENST00000303115	NM_002185.3	241	aTc/aCc																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839994	27839994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068995-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			534	71	693	0	ENST00000328488.2:c.100G>A	p.Gly34Ser	p.G34S	ENST00000328488	NM_003533.2	34	Ggt/Agt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739914	41739914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068995-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			377	87	464	0	ENST00000242208.4:c.59G>A	p.Ser20Asn	p.S20N	ENST00000242208	NM_002192.2	20	aGt/aAt																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20153874	20153874	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068995-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			208	30	218	0	ENST00000379607.5:c.186A>T	p.Arg62Ser	p.R62S	ENST00000379607	NM_001412.3	62	agA/agT																																																																															
ARAF	369	MSKCC	GRCh37	X	47429291	47429291	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0068995-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	29	510	0	ENST00000377045.4:c.1420-1G>T		p.X474_splice	ENST00000377045	NM_001654.4	474																																																																																
AMER1	139285	MSKCC	GRCh37	X	63411179	63411179	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068995-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			217	25	586	0	ENST00000330258.3:c.1988T>A	p.Val663Glu	p.V663E	ENST00000330258	NM_152424.3	663	gTg/gAg																																																																															
MED12	9968	MSKCC	GRCh37	X	70346228	70346228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068995-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	19	572	0	ENST00000374080.3:c.2579C>A	p.Ala860Asp	p.A860D	ENST00000374080		860	gCc/gAc																																																																															
BTK	695	MSKCC	GRCh37	X	100609643	100609643	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0068995-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	121	403	0	ENST00000308731.7:c.1606A>T	p.Lys536Ter	p.K536*	ENST00000308731	NM_000061.2	536	Aaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0069002-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			168	31	128	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0069002-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	120	422	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
WT1	7490	MSKCC	GRCh37	11	32456384	32456384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069002-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			308	32	304	0	ENST00000332351.3:c.508G>T	p.Gly170Cys	p.G170C	ENST00000332351	NM_024426.4	170	Ggc/Tgc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23619258	23619258	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069002-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			330	79	282	0	ENST00000261584.4:c.3277A>G	p.Ile1093Val	p.I1093V	ENST00000261584	NM_024675.3	1093	Att/Gtt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0069002-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			232	89	197	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2115841	2115841	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs281875187		P-0069002-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	74	300	0	ENST00000349721.2:c.3476G>A	p.Arg1159Gln	p.R1159Q	ENST00000349721	NM_003070.3	1159	cGa/cAa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039843	47039843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069002-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			246	60	237	0	ENST00000329236.7:c.952C>T	p.Arg318Cys	p.R318C	ENST00000329236	NM_001204466.1	318	Cgc/Tgc																																																																															
ATR	545	MSKCC	GRCh37	3	142281769	142281769	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069002-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	61	260	0	ENST00000350721.4:c.475C>G	p.Leu159Val	p.L159V	ENST00000350721	NM_001184.3	159	Ctc/Gtc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942083	81942083	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069002-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			340	48	303	0	ENST00000359376.3:c.1620G>T	p.Arg540Ser	p.R540S	ENST00000359376	NM_002661.3	540	agG/agT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040743	47040743	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069002-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	46	312	0	ENST00000329236.7:c.1144C>A	p.Leu382Ile	p.L382I	ENST00000329236	NM_001204466.1	382	Ctc/Atc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138550	11138550	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069002-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	72	332	0	ENST00000358026.2:c.3306C>G	p.Phe1102Leu	p.F1102L	ENST00000358026	NM_001128849.1	1102	ttC/ttG																																																																															
EED	8726	MSKCC	GRCh37	11	85961489	85961489	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0069002-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			261	43	163	0	ENST00000263360.6:c.266A>T	p.Lys89Met	p.K89M	ENST00000263360	NM_003797.3	89	aAg/aTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25976405	25976405	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0069002-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			217	31	140	0	ENST00000435504.4:c.1140G>T	p.Gln380His	p.Q380H	ENST00000435504		380	caG/caT																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81891879	81891879	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069002-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	58	302	0	ENST00000359376.3:c.349G>C	p.Glu117Gln	p.E117Q	ENST00000359376	NM_002661.3	117	Gag/Cag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0069003-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			440	1992	283	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069003-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			386	301	437	0	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29099518	29099518	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1345979642		P-0069003-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			310	108	288	0	ENST00000328354.6:c.883G>C	p.Glu295Gln	p.E295Q	ENST00000328354	NM_007194.3	295	Gaa/Caa																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40458461	40458461	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069003-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			598	114	324	0	ENST00000345506.4:c.1676A>G	p.Asn559Ser	p.N559S	ENST00000345506	NM_003152.3	559	aAc/aGc																																																																															
INSR	3643	MSKCC	GRCh37	19	7172386	7172386	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069003-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			466	127	289	0	ENST00000302850.5:c.1183C>G	p.Leu395Val	p.L395V	ENST00000302850	NM_000208.2	395	Cta/Gta																																																																															
BIRC3	330	MSKCC	GRCh37	11	102201775	102201775	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069003-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			314	154	297	0	ENST00000263464.3:c.1127T>G	p.Met376Arg	p.M376R	ENST00000263464	NM_001165.4	376	aTg/aGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0069007-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			629	107	563	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0069007-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			551	108	348	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0069007-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			532	67	474	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912756	32912756	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069007-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			673	58	430	0	ENST00000380152.3:c.4264G>C	p.Glu1422Gln	p.E1422Q	ENST00000380152		1422	Gag/Cag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106747	27106747	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069007-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			834	61	588	0	ENST00000324856.7:c.6358G>T	p.Glu2120Ter	p.E2120*	ENST00000324856	NM_006015.4	2120	Gaa/Taa																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5549445	5549445	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141466336		P-0069007-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			588	49	487	0	ENST00000397747.3:c.472G>A	p.Val158Ile	p.V158I	ENST00000397747	NM_025239.3	158	Gtc/Atc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299914	15299914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069007-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			782	60	559	0	ENST00000263388.2:c.1264G>A	p.Gly422Ser	p.G422S	ENST00000263388	NM_000435.2	422	Ggc/Agc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			190	9	170	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
RB1	5925	MSKCC	GRCh37	13	48878127	48878127	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1276653645		P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			616	105	429	0	ENST00000267163.4:c.83del	p.Pro28LeufsTer37	p.P28Lfs*37	ENST00000267163	NM_000321.2	27	Ccc/cc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444346	50444346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			898	60	460	0	ENST00000331340.3:c.276G>A	p.Met92Ile	p.M92I	ENST00000331340	NM_006060.4	92	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			559	139	431	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
FGF4	2249	MSKCC	GRCh37	11	69589776	69589776	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747109892		P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			749	57	659	0	ENST00000168712.1:c.77G>A	p.Arg26Gln	p.R26Q	ENST00000168712	NM_002007.2	26	cGa/cAa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469071	25469071	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			573	53	422	0	ENST00000264709.3:c.1387G>C	p.Glu463Gln	p.E463Q	ENST00000264709	NM_175629.2	463	Gag/Cag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431759	49431759	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1359665754		P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			624	58	474	1	ENST00000301067.7:c.9380G>A	p.Arg3127His	p.R3127H	ENST00000301067	NM_003482.3	3127	cGc/cAc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15960850	15960850	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1403202191		P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	57	317	0	ENST00000268712.3:c.6370C>T	p.Leu2124Phe	p.L2124F	ENST00000268712	NM_006311.3	2124	Ctt/Ttt																																																																															
MET	4233	MSKCC	GRCh37	7	116412030	116412049	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TACTTTTCCAGAAGGTATAT	TACTTTTCCAGAAGGTATAT	-			P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			464	84	484	0	ENST00000397752.3:c.3016_3028+7del		p.X1006_splice	ENST00000397752	NM_000245.2	1006																																																																																
ATM	472	MSKCC	GRCh37	11	108143293	108143293	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876659877		P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			396	44	252	0	ENST00000278616.4:c.3112G>C	p.Val1038Leu	p.V1038L	ENST00000278616	NM_000051.3	1038	Gta/Cta																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113380	209113380	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			436	50	337	0	ENST00000345146.2:c.127G>C	p.Asp43His	p.D43H	ENST00000345146	NM_005896.2	43	Gat/Cat																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149441068	149441068	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			354	40	256	0	ENST00000286301.3:c.1844T>G	p.Val615Gly	p.V615G	ENST00000286301	NM_005211.3	615	gTg/gGg																																																																															
ATRX	546	MSKCC	GRCh37	X	76777752	76777752	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			534	38	317	0	ENST00000373344.5:c.6964C>G	p.Gln2322Glu	p.Q2322E	ENST00000373344	NM_000489.3	2322	Caa/Gaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437149	49437149	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			622	47	402	0	ENST00000301067.7:c.5530C>A	p.Pro1844Thr	p.P1844T	ENST00000301067	NM_003482.3	1844	Cca/Aca																																																																															
FANCA	2175	MSKCC	GRCh37	16	89818553	89818553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			547	30	335	1	ENST00000389301.3:c.3059G>A	p.Arg1020Lys	p.R1020K	ENST00000389301	NM_000135.2	1020	aGa/aAa																																																																															
CRKL	1399	MSKCC	GRCh37	22	21272382	21272382	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			808	75	506	0	ENST00000354336.3:c.160G>C	p.Glu54Gln	p.E54Q	ENST00000354336	NM_005207.3	54	Gag/Cag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819244	3819244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			685	44	358	0	ENST00000262367.5:c.2991G>A	p.Met997Ile	p.M997I	ENST00000262367	NM_004380.2	997	atG/atA																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819216	3819216	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			668	48	391	0	ENST00000262367.5:c.3019G>T	p.Glu1007Ter	p.E1007*	ENST00000262367	NM_004380.2	1007	Gag/Tag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731085	162731085	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			669	46	418	0	ENST00000367921.3:c.940G>T	p.Glu314Ter	p.E314*	ENST00000367921	NM_006182.2	314	Gaa/Taa																																																																															
ALK	238	MSKCC	GRCh37	2	30143519	30143519	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			403	36	310	0	ENST00000389048.3:c.7G>C	p.Ala3Pro	p.A3P	ENST00000389048	NM_004304.4	3	Gcc/Ccc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285544	38285544	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			543	60	398	0	ENST00000425967.3:c.609G>C	p.Lys203Asn	p.K203N	ENST00000425967	NM_001174067.1	203	aaG/aaC																																																																															
PGR	5241	MSKCC	GRCh37	11	100933444	100933444	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			395	32	276	0	ENST00000325455.5:c.1946G>C	p.Arg649Thr	p.R649T	ENST00000325455	NM_001202474.3	649	aGa/aCa																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778253	27778253	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			674	86	450	0	ENST00000369163.2:c.402G>C	p.Glu134Asp	p.E134D	ENST00000369163	NM_003536.2	134	gaG/gaC																																																																															
USP8	9101	MSKCC	GRCh37	15	50782681	50782681	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			594	49	376	0	ENST00000307179.4:c.2193G>C	p.Lys731Asn	p.K731N	ENST00000307179		731	aaG/aaC																																																																															
GNB1	2782	MSKCC	GRCh37	1	1718796	1718796	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			515	48	319	0	ENST00000378609.4:c.997G>C	p.Asp333His	p.D333H	ENST00000378609	NM_002074.3	333	Gat/Cat																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23539056	23539056	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			601	52	419	0	ENST00000380871.4:c.383G>C	p.Arg128Pro	p.R128P	ENST00000380871	NM_006167.3	128	cGa/cCa																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598194	28598194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069010-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			542	67	359	0	ENST00000253063.3:c.166G>A	p.Glu56Lys	p.E56K	ENST00000253063	NM_031459.4	56	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			75	141	260	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0069039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	169	297	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579491	7579492	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCTGGGAGCTTCATCTGGACCTGGGTCTTCAGTGAACTGAGACTGGAAGG			P-0069039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	124	539	0	ENST00000269305.4:c.195_196insCCTTCCAGTCTCAGTTCACTGAAGACCCAGGTCCAGATGAAGCTCCCAGA	p.Met66ProfsTer74	p.M66Pfs*74	ENST00000269305	NM_001126112.2	65	-/CCTTCCAGTCTCAGTTCACTGAAGACCCAGGTCCAGATGAAGCTCCCAGA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577069	7577069	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55819519		P-0069040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	12	456	0	ENST00000269305.4:c.869G>A	p.Arg290His	p.R290H	ENST00000269305	NM_001126112.2	290	cGc/cAc																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0069041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			718	122	498	0	ENST00000397752.3:c.3028G>T	p.Asp1010Tyr	p.D1010Y	ENST00000397752	NM_000245.2	1010	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs942158624		P-0069041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			886	100	570	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89462324	89462324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	35	392	0	ENST00000336596.2:c.1796C>A	p.Pro599Gln	p.P599Q	ENST00000336596	NM_005233.5	599	cCa/cAa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410807	63410807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	199	492	0	ENST00000330258.3:c.2360C>A	p.Ser787Tyr	p.S787Y	ENST00000330258	NM_152424.3	787	tCc/tAc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89462330	89462330	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751984150		P-0069041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	35	390	0	ENST00000336596.2:c.1802C>T	p.Thr601Ile	p.T601I	ENST00000336596	NM_005233.5	601	aCa/aTa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609724	81609724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			774	94	599	0	ENST00000298171.2:c.1322C>A	p.Thr441Asn	p.T441N	ENST00000298171	NM_000369.2	441	aCc/aAc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13949293	13949295	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0069041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	37	382	0	ENST00000405192.2:c.833_835del	p.Phe278del	p.F278del	ENST00000405192	NM_001163147.1	278	tTTTat/tat																																																																															
SRC	6714	MSKCC	GRCh37	20	36022317	36022317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			746	94	537	0	ENST00000358208.4:c.370G>T	p.Ala124Ser	p.A124S	ENST00000358208		124	Gcc/Tcc																																																																															
TET1	80312	MSKCC	GRCh37	10	70405140	70405140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	36	458	0	ENST00000373644.4:c.2654G>A	p.Arg885Lys	p.R885K	ENST00000373644	NM_030625.2	885	aGa/aAa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223487	53223487	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	197	462	0	ENST00000375401.3:c.3872G>C	p.Arg1291Pro	p.R1291P	ENST00000375401	NM_004187.3	1291	cGc/cCc																																																																															
RB1	5925	MSKCC	GRCh37	13	49033879	49033879	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	35	402	0	ENST00000267163.4:c.2016G>C	p.Glu672Asp	p.E672D	ENST00000267163	NM_000321.2	672	gaG/gaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0069042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	10	296	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0069044-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	19	220	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	84	496	0	ENST00000269305.4:c.470T>G	p.Val157Gly	p.V157G	ENST00000269305	NM_001126112.2	157	gTc/gGc																																																																															
TET1	80312	MSKCC	GRCh37	10	70450741	70450741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069054-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	170	431	0	ENST00000373644.4:c.5581C>T	p.Pro1861Ser	p.P1861S	ENST00000373644	NM_030625.2	1861	Cca/Tca																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45394757	45394757	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069055-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	87	202	0	ENST00000262160.6:c.592C>G	p.His198Asp	p.H198D	ENST00000262160	NM_005901.5	198	Cac/Gac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285059	15285059	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs367543285		P-0069055-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	579	294	0	ENST00000263388.2:c.4556T>C	p.Leu1519Pro	p.L1519P	ENST00000263388	NM_000435.2	1519	cTg/cCg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14021913	14021913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069055-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	101	282	0	ENST00000311895.7:c.613G>A	p.Glu205Lys	p.E205K	ENST00000311895	NM_005236.2	205	Gaa/Aaa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37884044	37884045	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0069055-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	53	363	0	ENST00000269571.5:c.3520_3521del	p.Ser1174ProfsTer102	p.S1174Pfs*102	ENST00000269571		1172	aCT/a																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244287	5244287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069055-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	81	336	0	ENST00000357368.4:c.1195G>A	p.Glu399Lys	p.E399K	ENST00000357368	NM_002850.3	399	Gag/Aag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111767	56111767	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1189576862		P-0069055-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			21	37	183	0	ENST00000399503.3:c.367C>T	p.His123Tyr	p.H123Y	ENST00000399503	NM_005921.1	123	Cac/Tac																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99459233	99459237	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTT	CTCTT	-			P-0069055-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	119	252	0	ENST00000268035.6:c.1872_1876del	p.Ser625ValfsTer55	p.S625Vfs*55	ENST00000268035	NM_000875.3	623	tcCTCTTct/tcct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs876659675		P-0069080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	100	305	0	ENST00000269305.4:c.764T>G	p.Ile255Ser	p.I255S	ENST00000269305	NM_001126112.2	255	aTc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	36	367	0	ENST00000269305.4:c.808T>C	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	Ttt/Ctt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435927	56435927	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767761157		P-0069080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	64	495	1	ENST00000407977.2:c.1210C>T	p.Arg404Cys	p.R404C	ENST00000407977		404	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433053	49433053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	94	369	0	ENST00000301067.7:c.8318C>T	p.Ser2773Phe	p.S2773F	ENST00000301067	NM_003482.3	2773	tCc/tTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829935	72829940	+	frameshift_variant	Frame_Shift_Del	DEL	TAGGAG	TAGGAG	C			P-0069080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	73	391	0	ENST00000268489.5:c.6641_6646delinsG	p.Pro2214ArgfsTer10	p.P2214Rfs*10	ENST00000268489	NM_006885.3	2214	cCTCCTAtc/cGtc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439933	56439942	+	frameshift_variant	Frame_Shift_Del	DEL	ATGCGCAGCA	ATGCGCAGCA	TGCTG			P-0069080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	180	358	0	ENST00000407977.2:c.650_659delinsCAGCA	p.Val217AlafsTer40	p.V217Afs*40	ENST00000407977		217	gTGCTGCGCATc/gCAGCAc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643600	52643600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	80	467	0	ENST00000394830.3:c.2296G>A	p.Asp766Asn	p.D766N	ENST00000394830	NM_018313.4	766	Gat/Aat																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99454639	99454639	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	32	444	0	ENST00000268035.6:c.1558C>A	p.Leu520Ile	p.L520I	ENST00000268035	NM_000875.3	520	Ctc/Atc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401384	139401384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766198119		P-0069110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	57	485	0	ENST00000277541.6:c.3685G>A	p.Val1229Ile	p.V1229I	ENST00000277541	NM_017617.3	1229	Gtt/Att																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646846	23646846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	62	480	0	ENST00000261584.4:c.1021G>A	p.Glu341Lys	p.E341K	ENST00000261584	NM_024675.3	341	Gaa/Aaa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17950433	17950433	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768522857		P-0069110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	38	394	0	ENST00000458235.1:c.1294C>T	p.Arg432Cys	p.R432C	ENST00000458235	NM_000215.3	432	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0069111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	40	133	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0069111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	79	234	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0069111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	461	247	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131951767	131951767	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	40	201	0	ENST00000265335.6:c.3109G>C	p.Glu1037Gln	p.E1037Q	ENST00000265335		1037	Gaa/Caa																																																																															
AR	367	MSKCC	GRCh37	X	66905906	66905906	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137852573		P-0069111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	32	226	0	ENST00000374690.3:c.1823G>A	p.Arg608Gln	p.R608Q	ENST00000374690	NM_000044.3	608	cGa/cAa																																																																															
TET2	54790	MSKCC	GRCh37	4	106156087	106156087	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	112	347	0	ENST00000380013.4:c.988G>C	p.Glu330Gln	p.E330Q	ENST00000380013	NM_001127208.2	330	Gag/Cag																																																																															
SOS1	6654	MSKCC	GRCh37	2	39212966	39212966	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			P-0069111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	104	268	0	ENST00000402219.2:c.4001G>C	p.Ter1334SerextTer31	p.*1334Sext*31	ENST00000402219	NM_005633.3	1334	tGa/tCa																																																																															
EP300	2033	MSKCC	GRCh37	22	41573855	41573855	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	64	367	0	ENST00000263253.7:c.6140C>G	p.Ser2047Cys	p.S2047C	ENST00000263253	NM_001429.3	2047	tCt/tGt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865087	57865087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	79	292	0	ENST00000228682.2:c.2564C>T	p.Ser855Phe	p.S855F	ENST00000228682	NM_005269.2	855	tCt/tTt																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62319369	62319369	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs774688252		P-0069111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			833	131	324	0	ENST00000482936.1:c.1561G>A	p.Asp521Asn	p.D521N	ENST00000482936		521	Gat/Aat																																																																															
FLT4	2324	MSKCC	GRCh37	5	180038443	180038443	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	103	299	0	ENST00000261937.6:c.3574C>T	p.Gln1192Ter	p.Q1192*	ENST00000261937	NM_182925.4	1192	Cag/Tag																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143352401	143352402	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0069111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	50	166	0	ENST00000262992.4:c.11_12del	p.Lys4ArgfsTer19	p.K4Rfs*19	ENST00000262992	NM_001101669.1	4	aAA/a																																																																															
MYCL	4610	MSKCC	GRCh37	1	40367093	40367093	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1225122779		P-0069111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	91	384	0	ENST00000397332.2:c.104C>T	p.Ser35Leu	p.S35L	ENST00000397332	NM_001033082.2	35	tCg/tTg																																																																															
MDM2	4193	MSKCC	GRCh37	12	69218368	69218369	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0069111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			801	56	215	0	ENST00000462284.1:c.461dup	p.Ser155IlefsTer7	p.S155Ifs*7	ENST00000462284	NM_002392.5	154	tca/tCca																																																																															
POT1	25913	MSKCC	GRCh37	7	124499073	124499073	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	16	166	0	ENST00000357628.3:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000357628	NM_015450.2	214	Caa/Taa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0069114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	176	421	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	54	272	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RB1	5925	MSKCC	GRCh37	13	48878068	48878069	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	81	280	0	ENST00000267163.4:c.25dup	p.Thr9AsnfsTer22	p.T9Nfs*22	ENST00000267163	NM_000321.2	7	cga/cgAa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139418400	139418400	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	56	311	0	ENST00000277541.6:c.172C>T	p.Gln58Ter	p.Q58*	ENST00000277541	NM_017617.3	58	Cag/Tag																																																																															
EZH1	2145	MSKCC	GRCh37	17	40856670	40856670	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	80	218	0	ENST00000428826.2:c.1967G>T	p.Gly656Val	p.G656V	ENST00000428826		656	gGa/gTa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793411	18793411	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	60	237	0	ENST00000266497.5:c.4108T>A	p.Leu1370Ile	p.L1370I	ENST00000266497		1370	Tta/Ata																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088715	27088715	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	80	321	0	ENST00000324856.7:c.2324A>T	p.Gln775Leu	p.Q775L	ENST00000324856	NM_006015.4	775	cAg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980813	40980813	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	85	283	0	ENST00000373198.4:c.1673C>A	p.Pro558Gln	p.P558Q	ENST00000373198	NM_133170.3	558	cCa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579470	7579503	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGGGGAGCAGCCTCTGGCATTCTGGGAGCTTC	CGGGGGGAGCAGCCTCTGGCATTCTGGGAGCTTC	-			P-0069116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	108	422	0	ENST00000269305.4:c.184_217del	p.Glu62TrpfsTer50	p.E62Wfs*50	ENST00000269305	NM_001126112.2	62	GAAGCTCCCAGAATGCCAGAGGCTGCTCCCCCCGtg/tg																																																																															
NF1	4763	MSKCC	GRCh37	17	29667596	29667596	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0069116-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	91	285	0	ENST00000358273.4:c.6995C>G	p.Ser2332Ter	p.S2332*	ENST00000358273	NM_001042492.2	2332	tCa/tGa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0069150-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			651	31	505	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069150-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	19	334	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EP300	2033	MSKCC	GRCh37	22	41573443	41573443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069150-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			874	56	695	0	ENST00000263253.7:c.5728C>T	p.Pro1910Ser	p.P1910S	ENST00000263253	NM_001429.3	1910	Cct/Tct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0069151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			108	11	183	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115693	8115703	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTGTTTAGAT	TTTGTTTAGAT	-			P-0069151-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			318	74	305	0	ENST00000346208.3:c.1048-8_1050del		p.X350_splice	ENST00000346208		350																																																																																
TP53	7157	MSKCC	GRCh37	17	7576926	7576941	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTAGGAAAGAGGCAA	GCTAGGAAAGAGGCAA	-			P-0069157-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			199	61	311	0	ENST00000269305.4:c.920-15_920del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
FANCA	2175	MSKCC	GRCh37	16	89874772	89874772	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069157-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			158	36	216	0	ENST00000389301.3:c.526T>A	p.Ser176Thr	p.S176T	ENST00000389301	NM_000135.2	176	Tct/Act																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0069169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	294	409	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649869	88649869	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781556		P-0069169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	60	232	0	ENST00000372037.3:c.118G>A	p.Asp40Asn	p.D40N	ENST00000372037	NM_004329.2	40	Gac/Aac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0069179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			63	5	0	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0069179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	38	297	0	ENST00000346208.3:c.1003dup	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992630	72992630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			636	46	403	2	ENST00000268489.5:c.1415C>A	p.Ala472Glu	p.A472E	ENST00000268489	NM_006885.3	472	gCg/gAg																																																																															
RAD51B	5890	MSKCC	GRCh37	14	69061276	69061276	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			121	14	133	0	ENST00000487270.1:c.1111C>T	p.Gln371Ter	p.Q371*	ENST00000487270	NM_133509.3	371	Cag/Tag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343506	343506	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141807086		P-0069179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	49	291	2	ENST00000262320.3:c.2168G>A	p.Arg723Gln	p.R723Q	ENST00000262320	NM_003502.3	723	cGa/cAa																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281630	49281630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			185	17	411	1	ENST00000282018.3:c.677G>T	p.Arg226Leu	p.R226L	ENST00000282018	NM_020377.2	226	cGg/cTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259190	16259191	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGTGT			P-0069179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			241	26	419	0	ENST00000375759.3:c.6457_6461dup	p.Ala2155CysfsTer13	p.A2155Cfs*13	ENST00000375759	NM_015001.2	2152	gac/gaCGTGTc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61717812	61717812	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			92	10	286	0	ENST00000401558.2:c.1987C>A	p.Gln663Lys	p.Q663K	ENST00000401558	NM_003400.3	663	Caa/Aaa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306734	41306734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069185-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			825	231	439	0	ENST00000373198.4:c.925C>A	p.Pro309Thr	p.P309T	ENST00000373198	NM_133170.3	309	Cca/Aca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521298	187521299	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069185-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			733	183	512	0	ENST00000441802.2:c.11856dup	p.Gly3953TrpfsTer19	p.G3953Wfs*19	ENST00000441802	NM_005245.3	3952	-/T																																																																															
TP53	7157	MSKCC	GRCh37	17	7578471	7578471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069185-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			423	359	602	0	ENST00000269305.4:c.459del	p.Gly154AlafsTer16	p.G154Afs*16	ENST00000269305	NM_001126112.2	153	ccC/cc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971098	21971098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069185-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			438	285	501	0	ENST00000304494.5:c.260G>T	p.Arg87Leu	p.R87L	ENST00000304494	NM_000077.4	87	cGg/cTg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73336065	73336065	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069185-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			606	277	434	1	ENST00000377767.4:c.2338A>G	p.Arg780Gly	p.R780G	ENST00000377767	NM_014953.3	780	Aga/Gga																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733233	74733233	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069185-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			734	299	458	0	ENST00000359995.5:c.10G>T	p.Gly4Cys	p.G4C	ENST00000359995	NM_001195427.1	4	Ggc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0069185-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			142	264	331	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152861486	152861486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069185-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			463	362	427	0	ENST00000406277.2:c.266G>T	p.Arg89Leu	p.R89L	ENST00000406277	NM_152274.4	89	cGt/cTt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166207	32166207	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069185-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			326	356	430	0	ENST00000375023.3:c.4747C>A	p.Arg1583Ser	p.R1583S	ENST00000375023	NM_004557.3	1583	Cgt/Agt																																																																															
HGF	3082	MSKCC	GRCh37	7	81372752	81372753	+	missense_variant	Missense_Mutation	DNP	CG	CG	AT			P-0069185-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			770	373	367	0	ENST00000222390.5:c.781_782delinsAT	p.Arg261Ile	p.R261I	ENST00000222390	NM_000601.4	261	CGc/ATc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216988	2216988	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs927931566		P-0069185-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			637	185	523	0	ENST00000398665.3:c.2443C>G	p.Gln815Glu	p.Q815E	ENST00000398665	NM_032482.2	815	Cag/Gag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55219016	55219016	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069185-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			752	450	436	0	ENST00000275493.2:c.589G>T	p.Gly197Trp	p.G197W	ENST00000275493	NM_005228.3	197	Ggg/Tgg																																																																															
ERG	2078	MSKCC	GRCh37	21	39775610	39775610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069185-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			952	188	455	0	ENST00000288319.7:c.410A>T	p.Asp137Val	p.D137V	ENST00000288319	NM_182918.3	137	gAc/gTc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467774	50467774	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069185-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			927	430	519	0	ENST00000331340.3:c.1009G>T	p.Gly337Cys	p.G337C	ENST00000331340	NM_006060.4	337	Ggt/Tgt																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690509	33690509	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069185-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			375	266	468	0	ENST00000308377.4:c.318T>A	p.Phe106Leu	p.F106L	ENST00000308377	NM_152270.3	106	ttT/ttA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0069188-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			486	122	364	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913476		P-0069188-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			297	124	318	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061463	38061463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069188-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			436	123	412	0	ENST00000250448.2:c.526A>G	p.Ile176Val	p.I176V	ENST00000250448	NM_004496.3	176	Atc/Gtc																																																																															
CDH1	999	MSKCC	GRCh37	16	68835629	68835630	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069188-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			335	109	424	0	ENST00000261769.5:c.220_221insA	p.Arg74GlnfsTer20	p.R74Qfs*20	ENST00000261769	NM_004360.3	74	cga/cAga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912655		P-0069194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	79	306	0	ENST00000269305.4:c.725G>C	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	tGc/tCc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100980	41100980	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868706902		P-0069194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	33	383	2	ENST00000373198.4:c.1376G>A	p.Arg459Gln	p.R459Q	ENST00000373198	NM_133170.3	459	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0069194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	93	269	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673811	30673811	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	44	357	0	ENST00000376406.3:c.3149A>G	p.Gln1050Arg	p.Q1050R	ENST00000376406	NM_014641.2	1050	cAa/cGa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226180	2226180	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0069194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	87	435	0	ENST00000326181.6:c.1877G>A	p.Arg626Lys	p.R626K	ENST00000326181	NM_032271.2	626	aGg/aAg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572535	64572535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	209	481	0	ENST00000337652.1:c.1336G>T	p.Val446Leu	p.V446L	ENST00000337652	NM_130803.2	446	Gtg/Ttg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0069200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	124	289	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211815	2211815	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	45	252	0	ENST00000398665.3:c.1531C>G	p.Leu511Val	p.L511V	ENST00000398665	NM_032482.2	511	Ctg/Gtg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589556	67589579	+	inframe_deletion	In_Frame_Del	DEL	ATAATATTGAAGCTGTAGGGAAAA	ATAATATTGAAGCTGTAGGGAAAA	-			P-0069200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	70	182	0	ENST00000274335.5:c.1320_1343del	p.Asp440_Lys448delinsGlu	p.D440_K448delinsE	ENST00000274335		440	gATAATATTGAAGCTGTAGGGAAAAaa/gaa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589623	67589634	+	inframe_deletion	In_Frame_Del	DEL	ATATGATAGATT	ATATGATAGATT	-			P-0069200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	56	200	0	ENST00000274335.5:c.1392_1403del	p.Asp464_Tyr467del	p.D464_Y467del	ENST00000274335		462	gaATATGATAGATTa/gaa																																																																															
APC	324	MSKCC	GRCh37	5	112175935	112175935	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	80	305	0	ENST00000257430.4:c.4645del	p.Gln1549LysfsTer16	p.Q1549Kfs*16	ENST00000257430	NM_000038.5	1548	aaC/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175982	112175982	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0069200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	87	312	0	ENST00000257430.4:c.4691T>G	p.Leu1564Ter	p.L1564*	ENST00000257430	NM_000038.5	1564	tTa/tGa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8517998	8518005	+	frameshift_variant	Frame_Shift_Del	DEL	TGTTGACA	TGTTGACA	-			P-0069200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	62	283	0	ENST00000356435.5:c.1386_1393del	p.His462GlnfsTer9	p.H462Qfs*9	ENST00000356435		462	caTGTCAACAac/caac																																																																															
TP63	8626	MSKCC	GRCh37	3	189455627	189455637	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	TTTTCCAGCAT	TTTTCCAGCAT	ACTGAAA			P-0069200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	35	276	1	ENST00000264731.3:c.161_171delinsACTGAAA	p.Val54AspfsTer2	p.V54Dfs*2	ENST00000264731	NM_003722.4	54	gTTTTCCAGCAT/gACTGAAA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0069201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	11	203	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86633847	86633847	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069214-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			377	43	292	0	ENST00000274376.6:c.956G>A	p.Trp319Ter	p.W319*	ENST00000274376	NM_002890.2	319	tGg/tAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241722	55241722	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1051753269		P-0069214-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			637	342	286	1	ENST00000275493.2:c.2170G>A	p.Gly724Ser	p.G724S	ENST00000275493	NM_005228.3	724	Ggc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242485	+	protein_altering_variant	In_Frame_Del	DEL	GGAATTAAGAGAAGCAACATC	GGAATTAAGAGAAGCAACATC	AAT			P-0069214-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			485	376	255	0	ENST00000275493.2:c.2235_2255delinsAAT	p.Glu746_Ser752delinsIle	p.E746_S752delinsI	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCAACATCt/aaAATt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098539	11098539	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069214-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			700	82	396	0	ENST00000344626.4:c.1057A>T	p.Thr353Ser	p.T353S	ENST00000344626	NM_003072.3	353	Acc/Tcc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729854	41729854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069214-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			714	52	342	0	ENST00000242208.4:c.675C>A	p.Ser225Arg	p.S225R	ENST00000242208	NM_002192.2	225	agC/agA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782177		P-0069255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	228	341	3	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs397517201		P-0069255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	74	172	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991703	72991703	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201821212		P-0069255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	198	302	0	ENST00000268489.5:c.2342C>T	p.Ala781Val	p.A781V	ENST00000268489	NM_006885.3	781	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0069255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	135	205	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38991089	38991089	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	82	217	1	ENST00000357387.3:c.545G>C	p.Arg182Thr	p.R182T	ENST00000357387	NM_152756.3	182	aGa/aCa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117718214	117718214	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	110	281	0	ENST00000368508.3:c.643T>G	p.Trp215Gly	p.W215G	ENST00000368508	NM_002944.2	215	Tgg/Ggg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138453565	138453565	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	128	282	4	ENST00000289153.2:c.883C>G	p.Gln295Glu	p.Q295E	ENST00000289153	NM_006219.2	295	Caa/Gaa																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150934631	150934631	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0069255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	22	94	0	ENST00000271640.5:c.3155C>G	p.Ser1052Ter	p.S1052*	ENST00000271640	NM_001145415.1	1052	tCa/tGa																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997830	149997830	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	84	291	1	ENST00000253339.5:c.2637G>C	p.Trp879Cys	p.W879C	ENST00000253339		879	tgG/tgC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0069258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	91	536	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	359972	359972	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0069258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	57	907	1	ENST00000262320.3:c.1116+1G>A		p.X372_splice	ENST00000262320	NM_003502.3	372																																																																																
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	65	843	1	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453990	140453990	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	49	588	0	ENST00000288602.6:c.1738A>G	p.Asn580Asp	p.N580D	ENST00000288602	NM_004333.4	580	Aat/Gat																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2115822	2115822	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0069258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	84	1115	0	ENST00000349721.2:c.3457G>T	p.Asp1153Tyr	p.D1153Y	ENST00000349721	NM_003070.3	1153	Gat/Tat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0069262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	39	252	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0069262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	44	153	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981169	201981170	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0069262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	35	303	0	ENST00000359651.3:c.249dup	p.Lys84GlnfsTer8	p.K84Qfs*8	ENST00000359651		83	aac/aaCc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022452	12022453	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	67	345	0	ENST00000396373.4:c.559dup	p.Thr187AsnfsTer9	p.T187Nfs*9	ENST00000396373	NM_001987.4	186	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0069263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	166	232	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
RAC1	5879	MSKCC	GRCh37	7	6414399	6414399	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0069263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	55	152	0	ENST00000356142.4:c.33C>A	p.Asp11Glu	p.D11E	ENST00000356142	NM_018890.3	11	gaC/gaA																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923762	72923762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	96	288	0	ENST00000268489.5:c.3316C>T	p.His1106Tyr	p.H1106Y	ENST00000268489	NM_006885.3	1106	Cat/Tat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923774	72923774	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	100	282	0	ENST00000268489.5:c.3304A>T	p.Asn1102Tyr	p.N1102Y	ENST00000268489	NM_006885.3	1102	Aac/Tac																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790827	89790827	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	114	336	0	ENST00000336032.3:c.214C>A	p.Pro72Thr	p.P72T	ENST00000336032	NM_006813.2	72	Cct/Act																																																																															
RARA	5914	MSKCC	GRCh37	17	38508721	38508721	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	50	230	0	ENST00000254066.5:c.769C>T	p.Gln257Ter	p.Q257*	ENST00000254066	NM_000964.3	257	Cag/Tag																																																																															
MLH1	4292	MSKCC	GRCh37	3	37090099	37090099	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C	rs63751682		P-0069263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	80	159	0	ENST00000231790.2:c.1988A>C	p.Glu663Ala	p.E663A	ENST00000231790	NM_000249.3	663	gAg/gCg																																																																															
STK40	83931	MSKCC	GRCh37	1	36824367	36824367	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	97	226	0	ENST00000373129.3:c.169G>T	p.Asp57Tyr	p.D57Y	ENST00000373129	NM_032017.1	57	Gat/Tat																																																																															
ALK	238	MSKCC	GRCh37	2	29416105	29416105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	105	255	0	ENST00000389048.3:c.4848C>A	p.Asn1616Lys	p.N1616K	ENST00000389048	NM_004304.4	1616	aaC/aaA																																																																															
FH	2271	MSKCC	GRCh37	1	241669302	241669303	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0069263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	31	162	0	ENST00000366560.3:c.904_904+1delinsTT		p.X302_splice	ENST00000366560	NM_000143.3	302																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49445126	49445126	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	75	304	2	ENST00000301067.7:c.2340C>A	p.Cys780Ter	p.C780*	ENST00000301067	NM_003482.3	780	tgC/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778720		P-0069264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	140	476	0	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																															
STK11	6794	MSKCC	GRCh37	19	1221975	1221975	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	130	352	0	ENST00000326873.7:c.890G>C	p.Arg297Thr	p.R297T	ENST00000326873	NM_000455.4	297	aGg/aCg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864724	68864724	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	74	311	0	ENST00000288368.4:c.95A>T	p.Gln32Leu	p.Q32L	ENST00000288368	NM_024870.2	32	cAg/cTg																																																																															
CBL	867	MSKCC	GRCh37	11	119148996	119149018	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACATCCTGGCAGGTACGGATCTA	ACATCCTGGCAGGTACGGATCTA	-			P-0069264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	61	380	0	ENST00000264033.4:c.1217_1227+12del		p.X406_splice	ENST00000264033	NM_005188.3	406																																																																																
KDR	3791	MSKCC	GRCh37	4	55946272	55946272	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	100	452	0	ENST00000263923.4:c.3907A>T	p.Ser1303Cys	p.S1303C	ENST00000263923	NM_002253.2	1303	Agc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874052	151874052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	79	485	0	ENST00000262189.6:c.8486C>T	p.Pro2829Leu	p.P2829L	ENST00000262189	NM_170606.2	2829	cCa/cTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1219381	1219381	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	130	385	0	ENST00000326873.7:c.433G>T	p.Glu145Ter	p.E145*	ENST00000326873	NM_000455.4	145	Gag/Tag																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430947	181430947	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	136	488	0	ENST00000325404.1:c.799G>T	p.Ala267Ser	p.A267S	ENST00000325404	NM_003106.3	267	Gcc/Tcc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426131	47426131	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	118	243	0	ENST00000377045.4:c.651C>G	p.Asn217Lys	p.N217K	ENST00000377045	NM_001654.4	217	aaC/aaG																																																																															
PARP1	142	MSKCC	GRCh37	1	226578233	226578233	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1368616500		P-0069269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	135	384	0	ENST00000366794.5:c.495G>C	p.Lys165Asn	p.K165N	ENST00000366794	NM_001618.3	165	aaG/aaC																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216158	36216158	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	60	439	0	ENST00000222270.7:c.3566G>T	p.Gly1189Val	p.G1189V	ENST00000222270	NM_014727.1	1189	gGc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782177		P-0069271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	104	437	0	ENST00000269305.4:c.644G>C	p.Ser215Thr	p.S215T	ENST00000269305	NM_001126112.2	215	aGt/aCt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865611	57865611	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1027428919		P-0069271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	80	506	0	ENST00000228682.2:c.3088G>A	p.Glu1030Lys	p.E1030K	ENST00000228682	NM_005269.2	1030	Gaa/Aaa																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627325	14627328	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0069271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	56	467	0	ENST00000254322.2:c.742_745del	p.Lys248GlufsTer23	p.K248Efs*23	ENST00000254322	NM_006145.1	248	AAGAga/ga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36209156	36209156	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1020958708		P-0069271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	44	434	0	ENST00000222270.7:c.236G>T	p.Arg79Leu	p.R79L	ENST00000222270	NM_014727.1	79	cGg/cTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692993	89693012	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACCAGAGACAAAAAGGTAA	GACCAGAGACAAAAAGGTAA	-			P-0069271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	25	325	0	ENST00000371953.3:c.478_492+5del		p.X160_splice	ENST00000371953	NM_000314.4	160																																																																																
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	339	569	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913407		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	124	366	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																															
AXL	558	MSKCC	GRCh37	19	41743932	41743933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778012871		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	126	484	1	ENST00000301178.4:c.874dup	p.His292ProfsTer47	p.H292Pfs*47	ENST00000301178	NM_021913.4	289	-/C																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631878	90631878	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1319035463		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	285	457	0	ENST00000330062.3:c.475C>T	p.Arg159Cys	p.R159C	ENST00000330062	NM_002168.2	159	Cgc/Tgc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	157	432	7	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134823	41134823	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	139	377	0	ENST00000379561.5:c.805C>T	p.Arg269Ter	p.R269*	ENST00000379561	NM_002015.3	269	Cga/Tga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	145	462	6	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	101	399	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
ABL1	25	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	119	378	0	ENST00000318560.5:c.2352del	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390736	139390736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	170	500	0	ENST00000277541.6:c.7455del	p.Ser2486ArgfsTer103	p.S2486Rfs*103	ENST00000277541	NM_017617.3	2485	ccC/cc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47639588	47639588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	69	220	0	ENST00000233146.2:c.687del	p.Ala230LeufsTer16	p.A230Lfs*16	ENST00000233146	NM_000251.2	227	agA/ag																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008201	29008201	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	92	397	0	ENST00000282397.4:c.670C>T	p.Arg224Ter	p.R224*	ENST00000282397	NM_002019.4	224	Cga/Tga																																																																															
MGA	23269	MSKCC	GRCh37	15	42059170	42059170	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs756744691		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	70	548	1	ENST00000219905.7:c.8895del	p.Thr2966ProfsTer4	p.T2966Pfs*4	ENST00000219905	NM_001164273.1	2964	Ccc/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821614	72821614	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1462530890		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	79	267	0	ENST00000268489.5:c.10561G>A	p.Gly3521Ser	p.G3521S	ENST00000268489	NM_006885.3	3521	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112164664	112164664	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	67	296	0	ENST00000257430.4:c.1742del	p.Lys581ArgfsTer9	p.K581Rfs*9	ENST00000257430	NM_000038.5	580	Aaa/aa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934864	9934864	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766162952		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	162	396	0	ENST00000330684.3:c.1426G>A	p.Asp476Asn	p.D476N	ENST00000330684	NM_001134407.1	476	Gac/Aac																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265386	10265386	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1003447106		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	155	462	0	ENST00000340748.4:c.1660G>A	p.Ala554Thr	p.A554T	ENST00000340748		554	Gcg/Acg																																																																															
ABL1	25	MSKCC	GRCh37	9	133759832	133759832	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145494071		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	89	399	0	ENST00000318560.5:c.2155G>A	p.Ala719Thr	p.A719T	ENST00000318560	NM_005157.4	719	Gcc/Acc																																																																															
IRF4	3662	MSKCC	GRCh37	6	401700	401700	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200311468		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	161	521	0	ENST00000380956.4:c.1022C>T	p.Ala341Val	p.A341V	ENST00000380956	NM_001195286.1	341	gCg/gTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	131	500	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	107	305	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	88	317	2	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108338	8108338	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1454860641		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	132	406	0	ENST00000585124.1:c.886G>A	p.Val296Met	p.V296M	ENST00000585124	NM_004217.3	296	Gtg/Atg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855831	45855831	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747646421		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	149	465	0	ENST00000391945.4:c.1979C>T	p.Ala660Val	p.A660V	ENST00000391945	NM_000400.3	660	gCg/gTg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324862	31324862	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	113	538	0	ENST00000412585.2:c.73+1G>A		p.X25_splice	ENST00000412585	NM_005514.6	25																																																																																
NFE2L2	4780	MSKCC	GRCh37	2	178098012	178098012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	58	322	1	ENST00000397062.3:c.368del	p.Leu123TrpfsTer8	p.L123Wfs*8	ENST00000397062	NM_006164.4	123	tTg/tg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	226	408	2	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81972512	81972512	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1263457484		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	110	327	0	ENST00000359376.3:c.3305C>T	p.Thr1102Met	p.T1102M	ENST00000359376	NM_002661.3	1102	aCg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	142	457	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
FYN	2534	MSKCC	GRCh37	6	112020732	112020732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	177	334	0	ENST00000368678.4:c.839C>T	p.Ala280Val	p.A280V	ENST00000368678		280	gCt/gTt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43733757	43733757	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	31	251	0	ENST00000382044.4:c.3065del	p.Asn1022MetfsTer20	p.N1022Mfs*20	ENST00000382044	NM_001141980.1	1022	aAt/at																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939413	71939413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148394356		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	149	446	0	ENST00000298229.2:c.268C>T	p.Arg90Cys	p.R90C	ENST00000298229	NM_001567.3	90	Cgc/Tgc																																																																															
PARP1	142	MSKCC	GRCh37	1	226564829	226564829	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	91	335	0	ENST00000366794.5:c.1921del	p.Leu641TrpfsTer12	p.L641Wfs*12	ENST00000366794	NM_001618.3	641	Ctg/tg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11030338	11030340	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	119	414	0	ENST00000327064.4:c.1091_1093del	p.Glu364del	p.E364del	ENST00000327064	NM_199141.1	363	aAAGaa/aaa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778596	3778596	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs749783719		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	241	458	0	ENST00000262367.5:c.6452G>T	p.Arg2151Leu	p.R2151L	ENST00000262367	NM_004380.2	2151	cGg/cTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151846107	151846107	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	127	459	0	ENST00000262189.6:c.12905del	p.Pro4302LeufsTer24	p.P4302Lfs*24	ENST00000262189	NM_170606.2	4302	cCt/ct																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2213861	2213861	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1204733528		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	95	486	2	ENST00000398665.3:c.1673C>T	p.Ala558Val	p.A558V	ENST00000398665	NM_032482.2	558	gCg/gTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244197	5244197	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754224013		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	146	490	0	ENST00000357368.4:c.1285G>A	p.Ala429Thr	p.A429T	ENST00000357368	NM_002850.3	429	Gcg/Acg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285524	38285524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	158	431	0	ENST00000425967.3:c.629C>A	p.Pro210His	p.P210H	ENST00000425967	NM_001174067.1	210	cCt/cAt																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864882	117864882	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	79	287	0	ENST00000297338.2:c.1227G>T	p.Glu409Asp	p.E409D	ENST00000297338	NM_006265.2	409	gaG/gaT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188187	32188187	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754712190		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	118	471	1	ENST00000375023.3:c.1154G>A	p.Arg385His	p.R385H	ENST00000375023	NM_004557.3	385	cGc/cAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576452	67576453	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	60	319	0	ENST00000274335.5:c.735dup	p.His246ThrfsTer21	p.H246Tfs*21	ENST00000274335		244	tta/ttAa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31322882	31322882	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	112	330	0	ENST00000412585.2:c.1012+2T>C		p.X338_splice	ENST00000412585	NM_005514.6	338																																																																																
STAT3	6774	MSKCC	GRCh37	17	40489543	40489543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	158	419	0	ENST00000264657.5:c.707C>T	p.Thr236Met	p.T236M	ENST00000264657	NM_139276.2	236	aCg/aTg																																																																															
VHL	7428	MSKCC	GRCh37	3	10191555	10191555	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs5030823		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	137	372	0	ENST00000256474.2:c.548C>T	p.Ser183Leu	p.S183L	ENST00000256474	NM_000551.3	183	tCg/tTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925622	114925622	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1189031682		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	134	392	0	ENST00000543371.1:c.1704del	p.Ser569ProfsTer33	p.S569Pfs*33	ENST00000543371	NM_001198531.1	567	gCc/gc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445512	49445512	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1301516107		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	112	366	0	ENST00000301067.7:c.1954C>T	p.Arg652Cys	p.R652C	ENST00000301067	NM_003482.3	652	Cgc/Tgc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46736432	46736432	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764014400		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	150	359	0	ENST00000371975.4:c.1144C>T	p.Arg382Trp	p.R382W	ENST00000371975	NM_003579.3	382	Cgg/Tgg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430390	78430390	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367853057		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	91	413	0	ENST00000370768.2:c.778G>A	p.Gly260Ser	p.G260S	ENST00000370768	NM_003902.3	260	Ggt/Agt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625177	69625177	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs281860305		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	116	467	0	ENST00000334134.2:c.616del	p.Val206SerfsTer?	p.V206Sfs*?	ENST00000334134	NM_005247.2	206	Gtc/tc																																																																															
SDHA	6389	MSKCC	GRCh37	5	256470	256470	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3211483		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	123	257	0	ENST00000264932.6:c.1930G>A	p.Val644Met	p.V644M	ENST00000264932	NM_004168.2	644	Gtg/Atg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137183	64137183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	122	450	2	ENST00000334205.4:c.1615G>A	p.Ala539Thr	p.A539T	ENST00000334205	NM_003942.2	539	Gcc/Acc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803738	1803738	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774047997		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	87	387	0	ENST00000260795.2:c.916G>A	p.Val306Ile	p.V306I	ENST00000260795		306	Gtt/Att																																																																															
SRC	6714	MSKCC	GRCh37	20	36030883	36030883	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1252138081		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	127	378	0	ENST00000358208.4:c.1162C>T	p.Arg388Trp	p.R388W	ENST00000358208		388	Cgg/Tgg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108696	8108696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	118	320	0	ENST00000585124.1:c.699G>A	p.Met233Ile	p.M233I	ENST00000585124	NM_004217.3	233	atG/atA																																																																															
MSH2	4436	MSKCC	GRCh37	2	47657081	47657081	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs267607950		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	92	248	0	ENST00000233146.2:c.1276+1G>T		p.X426_splice	ENST00000233146	NM_000251.2	426																																																																																
MTOR	2475	MSKCC	GRCh37	1	11316113	11316113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs968103570		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	142	386	0	ENST00000361445.4:c.641G>A	p.Arg214His	p.R214H	ENST00000361445	NM_004958.3	214	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	83	278	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	160	389	0	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428256	49428256	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201127814		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	133	448	0	ENST00000301067.7:c.10444C>T	p.Arg3482Trp	p.R3482W	ENST00000301067	NM_003482.3	3482	Cgg/Tgg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	197	367	6	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
NF1	4763	MSKCC	GRCh37	17	29552243	29552243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151138158		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	63	260	0	ENST00000358273.4:c.1976G>A	p.Arg659Gln	p.R659Q	ENST00000358273	NM_001042492.2	659	cGg/cAg																																																																															
APLNR	187	MSKCC	GRCh37	11	57004007	57004007	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs761618705		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	137	442	1	ENST00000257254.3:c.472G>A	p.Ala158Thr	p.A158T	ENST00000257254		158	Gcc/Acc																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137522070	137522070	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	49	316	0	ENST00000367739.4:c.809T>A	p.Ile270Asn	p.I270N	ENST00000367739	NM_000416.2	270	aTt/aAt																																																																															
ERG	2078	MSKCC	GRCh37	21	39755447	39755447	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1363790097		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	130	411	0	ENST00000288319.7:c.1318G>A	p.Val440Met	p.V440M	ENST00000288319	NM_182918.3	440	Gtg/Atg																																																																															
WT1	7490	MSKCC	GRCh37	11	32456496	32456497	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	74	349	0	ENST00000332351.3:c.395dup	p.Pro133AlafsTer66	p.P133Afs*66	ENST00000332351	NM_024426.4	132	ccg/ccCg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448345	56448345	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	167	430	0	ENST00000407977.2:c.302C>A	p.Pro101His	p.P101H	ENST00000407977		101	cCt/cAt																																																																															
EP300	2033	MSKCC	GRCh37	22	41573588	41573588	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776916559		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	133	523	0	ENST00000263253.7:c.5873C>T	p.Pro1958Leu	p.P1958L	ENST00000263253	NM_001429.3	1958	cCg/cTg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1953898	1953898	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760749890		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	126	454	0	ENST00000382895.3:c.2077G>A	p.Ala693Thr	p.A693T	ENST00000382895	NM_133330.2	693	Gcc/Acc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135058	11135058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777562578		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	130	301	0	ENST00000344626.4:c.3025C>T	p.Arg1009Cys	p.R1009C	ENST00000344626	NM_003072.3	1009	Cgc/Tgc																																																																															
TRIP13	9319	MSKCC	GRCh37	5	917132	917132	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753736754		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	125	361	0	ENST00000166345.3:c.1213G>A	p.Val405Ile	p.V405I	ENST00000166345	NM_004237.3	405	Gtc/Atc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1627407	1627407	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	169	381	0	ENST00000344749.5:c.317del	p.Gly106AlafsTer15	p.G106Afs*15	ENST00000344749	NM_001136139.2	106	gGc/gc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2122850	2122851	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	210	367	0	ENST00000219476.3:c.2224dup	p.Ser742PhefsTer20	p.S742Ffs*20	ENST00000219476	NM_000548.3	741	ctt/cTtt																																																																															
KIT	3815	MSKCC	GRCh37	4	55602757	55602757	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	70	314	0	ENST00000288135.5:c.2578T>A	p.Trp860Arg	p.W860R	ENST00000288135	NM_000222.2	860	Tgg/Agg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446437	49446437	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748251797		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	307	444	0	ENST00000301067.7:c.1168G>A	p.Val390Ile	p.V390I	ENST00000301067	NM_003482.3	390	Gtt/Att																																																																															
FYN	2534	MSKCC	GRCh37	6	112035549	112035549	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	64	261	0	ENST00000368678.4:c.344+1G>A		p.X115_splice	ENST00000368678		115																																																																																
JAK1	3716	MSKCC	GRCh37	1	65301168	65301168	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	101	308	0	ENST00000342505.4:c.3280C>A	p.Pro1094Thr	p.P1094T	ENST00000342505	NM_002227.2	1094	Cca/Aca																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098405	11098405	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770322996		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	105	471	0	ENST00000344626.4:c.923C>T	p.Thr308Met	p.T308M	ENST00000344626	NM_003072.3	308	aCg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873659	151873659	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142287778		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	161	431	0	ENST00000262189.6:c.8879C>T	p.Pro2960Leu	p.P2960L	ENST00000262189	NM_170606.2	2960	cCg/cTg																																																																															
NADK	65220	MSKCC	GRCh37	1	1696697	1696697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	161	370	0	ENST00000341426.5:c.149C>T	p.Ser50Leu	p.S50L	ENST00000341426	NM_023018.4	50	tCg/tTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030478	47030478	+	intron_variant	Intron	SNP	C	C	T			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	112	190	0	ENST00000329236.7:c.201+1581C>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
BRD4	23476	MSKCC	GRCh37	19	15367926	15367926	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs929177624		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	37	364	0	ENST00000263377.2:c.1400C>T	p.Ala467Val	p.A467V	ENST00000263377	NM_058243.2	467	gCc/gTc																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127915895	127915895	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	103	362	0	ENST00000373547.4:c.586T>C	p.Trp196Arg	p.W196R	ENST00000373547	NM_002721.4	196	Tgg/Cgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11169011	11169011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	140	322	0	ENST00000344626.4:c.4505G>A	p.Arg1502His	p.R1502H	ENST00000344626	NM_003072.3	1502	cGc/cAc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661704	227661704	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	88	436	0	ENST00000305123.5:c.1751A>G	p.Glu584Gly	p.E584G	ENST00000305123	NM_005544.2	584	gAg/gGg																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31237157	31237157	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1166235395		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	39	404	0	ENST00000376228.5:c.1054A>G	p.Asn352Asp	p.N352D	ENST00000376228	NM_002117.5	352	Aac/Gac																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045802	26045802	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	137	538	0	ENST00000540144.1:c.164A>G	p.Tyr55Cys	p.Y55C	ENST00000540144	NM_003531.2	55	tAc/tGc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248064	110248064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	149	326	0	ENST00000374672.4:c.1408C>A	p.His470Asn	p.H470N	ENST00000374672	NM_004235.4	470	Cac/Aac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49449106	49449106	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1057520167		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	115	277	0	ENST00000301067.7:c.2T>C	p.Met1?	p.M1?	ENST00000301067	NM_003482.3	1	aTg/aCg																																																																															
ERG	2078	MSKCC	GRCh37	21	39774496	39774496	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	99	317	0	ENST00000288319.7:c.656T>A	p.Met219Lys	p.M219K	ENST00000288319	NM_182918.3	219	aTg/aAg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47707859	47707859	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	77	275	0	ENST00000233146.2:c.2484del	p.His829MetfsTer12	p.H829Mfs*12	ENST00000233146	NM_000251.2	828	aTt/at																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223354	36223355	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	105	565	0	ENST00000222270.7:c.5909dup	p.Glu1971Ter	p.E1971*	ENST00000222270	NM_014727.1	1968	-/C																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152864501	152864501	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			30	26	100	0	ENST00000406277.2:c.27del	p.Pro10LeufsTer30	p.P10Lfs*30	ENST00000406277	NM_152274.4	9	ggG/gg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324515	31324515	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs41552212		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	149	523	0	ENST00000412585.2:c.293A>G	p.Asp98Gly	p.D98G	ENST00000412585	NM_005514.6	98	gAc/gGc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117638316	117638316	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369340872		P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	80	301	0	ENST00000368508.3:c.6125G>A	p.Arg2042Gln	p.R2042Q	ENST00000368508	NM_002944.2	2042	cGg/cAg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150933117	150933117	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	145	414	0	ENST00000271640.5:c.2579T>A	p.Ile860Asn	p.I860N	ENST00000271640	NM_001145415.1	860	aTc/aAc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5066694	5066694	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	60	254	0	ENST00000381652.3:c.1231A>C	p.Ser411Arg	p.S411R	ENST00000381652	NM_004972.3	411	Agt/Cgt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672975	30672975	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1446862496		P-0069277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			765	110	465	0	ENST00000376406.3:c.3985G>A	p.Ala1329Thr	p.A1329T	ENST00000376406	NM_014641.2	1329	Gcc/Acc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602848	10602848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	36	409	0	ENST00000171111.5:c.730G>A	p.Glu244Lys	p.E244K	ENST00000171111	NM_203500.1	244	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0069277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	80	209	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18715792	18715792	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	83	249	0	ENST00000266497.5:c.3623C>A	p.Ala1208Glu	p.A1208E	ENST00000266497		1208	gCa/gAa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207136	1207142	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCCGT	GGGCCGT	-			P-0069277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	199	353	0	ENST00000326873.7:c.224_230del	p.Arg75ThrfsTer19	p.R75Tfs*19	ENST00000326873	NM_000455.4	75	aGGGCCGTc/ac																																																																															
STAG2	10735	MSKCC	GRCh37	X	123190067	123190067	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	24	223	1	ENST00000218089.9:c.1286G>A	p.Gly429Glu	p.G429E	ENST00000218089	NM_001042749.1	429	gGa/gAa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729094	66729099	+	inframe_deletion	In_Frame_Del	DEL	TGGAGA	TGGAGA	-			P-0069288-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			828	23	456	0	ENST00000307102.5:c.303_308del	p.Glu102_Ile103del	p.E102_I103del	ENST00000307102	NM_002755.3	101	cTGGAGAtc/ctc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578217	7578217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069288-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			870	29	521	0	ENST00000269305.4:c.632C>T	p.Thr211Ile	p.T211I	ENST00000269305	NM_001126112.2	211	aCt/aTt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138835	64138857	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGCGGAGCGCCACCGCCTCCC	GCTGCGGAGCGCCACCGCCTCCC	-			P-0069296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	156	318	0	ENST00000334205.4:c.2204_2226del	p.Leu735ProfsTer61	p.L735Pfs*61	ENST00000334205	NM_003942.2	734	aaGCTGCGGAGCGCCACCGCCTCCCgc/aagc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138863	64138863	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	166	340	0	ENST00000334205.4:c.2230G>T	p.Gly744Cys	p.G744C	ENST00000334205	NM_003942.2	744	Ggc/Tgc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940992	71941008	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTCCACAGCACCCCC	AGCTCCACAGCACCCCC	-			P-0069296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			830	183	511	0	ENST00000298229.2:c.874_890del	p.Thr292AlafsTer6	p.T292Afs*6	ENST00000298229	NM_001567.3	290	AGCTCCACAGCACCCCCa/a																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343384	118343384	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	149	366	0	ENST00000534358.1:c.1510A>C	p.Ser504Arg	p.S504R	ENST00000534358	NM_005933.3	504	Agc/Cgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0069296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	223	247	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907316	32907317	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0069296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	176	423	0	ENST00000380152.3:c.1705_1706del	p.Gln569GlufsTer20	p.Q569Efs*20	ENST00000380152		567	acCAca/acca																																																																															
CDH1	999	MSKCC	GRCh37	16	68849455	68849455	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	151	350	0	ENST00000261769.5:c.1358A>G	p.His453Arg	p.H453R	ENST00000261769	NM_004360.3	453	cAc/cGc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4102432	4102432	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	322	381	0	ENST00000262948.5:c.470A>G	p.Gln157Arg	p.Q157R	ENST00000262948	NM_030662.3	157	cAg/cGg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095554	178095554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	158	356	0	ENST00000397062.3:c.1777C>T	p.Leu593Phe	p.L593F	ENST00000397062	NM_006164.4	593	Ctt/Ttt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89156958	89156959	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0069296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	101	286	0	ENST00000336596.2:c.60_61delinsTT	p.Glu21Ter	p.E21*	ENST00000336596	NM_005233.5	20	ggGGaa/ggTTaa																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502870	186502870	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	159	341	0	ENST00000323963.5:c.328A>C	p.Thr110Pro	p.T110P	ENST00000323963		110	Acc/Ccc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876188	35876188	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs536561203		P-0069296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	366	349	0	ENST00000303115.3:c.980C>T	p.Thr327Met	p.T327M	ENST00000303115	NM_002185.3	327	aCg/aTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81350065	81350065	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	197	242	0	ENST00000222390.5:c.1267C>A	p.His423Asn	p.H423N	ENST00000222390	NM_000601.4	423	Cat/Aat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045006	47045006	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069296-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	227	509	0	ENST00000329236.7:c.2098C>T	p.Gln700Ter	p.Q700*	ENST00000329236	NM_001204466.1	700	Cag/Tag																																																																															
ATRX	546	MSKCC	GRCh37	X	76814285	76814285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			12	146	140	0	ENST00000373344.5:c.6359G>T	p.Gly2120Val	p.G2120V	ENST00000373344	NM_000489.3	2120	gGa/gTa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577274	64577275	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTC			P-0069319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	327	355	0	ENST00000337652.1:c.307_308insGACA	p.Leu103ArgfsTer15	p.L103Rfs*15	ENST00000337652	NM_130803.2	103	ctg/cGACAtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0069320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	100	366	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0069320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	66	248	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0069320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	79	298	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519896		P-0069320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	8	380	0	ENST00000281708.4:c.1514G>A	p.Arg505His	p.R505H	ENST00000281708	NM_033632.3	505	cGc/cAc																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs924551538		P-0069320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	21	392	1	ENST00000412916.2:c.165+1G>A		p.X55_splice	ENST00000412916		55																																																																																
ATM	472	MSKCC	GRCh37	11	108199953	108199953	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	32	271	0	ENST00000278616.4:c.7295T>C	p.Ile2432Thr	p.I2432T	ENST00000278616	NM_000051.3	2432	aTt/aCt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251555	212251660	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTTCTGAATAATCAGTTCATACCTTGTTTGGGTTTGTCTCGCATAGGAGTCATGTAACCTTCCTCATCCAGCTCTCCTCGTGGGCTCCGTTCTGGGGCAAACACG	GTTTCTGAATAATCAGTTCATACCTTGTTTGGGTTTGTCTCGCATAGGAGTCATGTAACCTTCCTCATCCAGCTCTCCTCGTGGGCTCCGTTCTGGGGCAAACACG	-			P-0069320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	19	304	0	ENST00000342788.4:c.3399_3481+23del		p.X1133_splice	ENST00000342788	NM_005235.2	1133																																																																																
CDK12	51755	MSKCC	GRCh37	17	37680953	37680953	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	22	414	0	ENST00000447079.4:c.3122A>C	p.Glu1041Ala	p.E1041A	ENST00000447079	NM_015083.1	1041	gAg/gCg																																																																															
KLF5	688	MSKCC	GRCh37	13	73649974	73649974	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	47	398	0	ENST00000377687.4:c.1324T>C	p.Phe442Leu	p.F442L	ENST00000377687	NM_001730.3	442	Ttc/Ctc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570369	87570369	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	35	468	0	ENST00000277120.3:c.2109C>G	p.Asn703Lys	p.N703K	ENST00000277120		703	aaC/aaG																																																																															
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	27	452	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																															
APC	324	MSKCC	GRCh37	5	112173956	112173957	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0069329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	163	462	0	ENST00000257430.4:c.2666_2667del	p.Lys889SerfsTer22	p.K889Sfs*22	ENST00000257430	NM_000038.5	889	AAa/a																																																																															
AR	367	MSKCC	GRCh37	X	66765159	66765206	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	-	rs1416035178		P-0069329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	56	158	0	ENST00000374690.3:c.192_239del	p.Gln65_Gln80del	p.Q65_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579461	7579462	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	179	634	0	ENST00000269305.4:c.225dup	p.Ala76CysfsTer73	p.A76Cfs*73	ENST00000269305	NM_001126112.2	75	-/T																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569793	95569793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	147	493	0	ENST00000343455.3:c.3940C>T	p.Arg1314Trp	p.R1314W	ENST00000343455	NM_177438.2	1314	Cgg/Tgg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285842	46285842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	121	390	0	ENST00000334344.6:c.5110G>A	p.Glu1704Lys	p.E1704K	ENST00000334344	NM_152641.2	1704	Gaa/Aaa																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366770	40366776	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGGTC	GCCGGTC	-			P-0069329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	133	518	0	ENST00000397332.2:c.421_427del	p.Asp141SerfsTer61	p.D141Sfs*61	ENST00000397332	NM_001033082.2	141	GACCGGCtc/tc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0069331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	64	326	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48018201	48018202	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0069331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	60	347	0	ENST00000234420.5:c.402dup	p.Asp135Ter	p.D135*	ENST00000234420	NM_000179.2	132	-/T																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771980	135771980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	90	457	0	ENST00000298552.3:c.3137C>T	p.Ser1046Phe	p.S1046F	ENST00000298552	NM_001162426.1	1046	tCt/tTt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068413	26068413	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	48	237	0	ENST00000435504.4:c.77A>T	p.Asn26Ile	p.N26I	ENST00000435504		26	aAt/aTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859532	151859536	+	frameshift_variant	Frame_Shift_Del	DEL	TTCCA	TTCCA	-			P-0069331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	147	424	0	ENST00000262189.6:c.11126_11130del	p.Met3709AsnfsTer14	p.M3709Nfs*14	ENST00000262189	NM_170606.2	3709	aTGGAA/a																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0069332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	116	273	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578490	7578490	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1453167097		P-0069332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	118	507	0	ENST00000269305.4:c.440T>G	p.Val147Gly	p.V147G	ENST00000269305	NM_001126112.2	147	gTt/gGt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89156983	89156983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	47	352	0	ENST00000336596.2:c.85G>A	p.Glu29Lys	p.E29K	ENST00000336596	NM_005233.5	29	Gaa/Aaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249402	153249402	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs772056210		P-0069332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	96	429	0	ENST00000281708.4:c.1376G>T	p.Gly459Val	p.G459V	ENST00000281708	NM_033632.3	459	gGg/gTg																																																																															
SMO	6608	MSKCC	GRCh37	7	128845479	128845479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	146	435	0	ENST00000249373.3:c.776C>T	p.Ser259Leu	p.S259L	ENST00000249373	NM_005631.4	259	tCg/tTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70338703	70338703	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0069332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	162	181	0	ENST00000374080.3:c.99G>T	p.Glu33Asp	p.E33D	ENST00000374080		33	gaG/gaT																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912198	114912198	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0069332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	58	270	0	ENST00000543371.1:c.1268A>G	p.Tyr423Cys	p.Y423C	ENST00000543371	NM_001198531.1	423	tAt/tGt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247156	153247156	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0069332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	77	323	0	ENST00000281708.4:c.1644+2T>A		p.X548_splice	ENST00000281708	NM_033632.3	548																																																																																
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912655		P-0069333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	180	424	0	ENST00000269305.4:c.725G>C	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	tGc/tCc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36846912	36846912	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139738432		P-0069333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	154	547	0	ENST00000358127.4:c.1027G>A	p.Gly343Arg	p.G343R	ENST00000358127	NM_001280556.1	343	Ggg/Agg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520153	9520153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			782	170	486	0	ENST00000353224.5:c.2116C>A	p.Pro706Thr	p.P706T	ENST00000353224	NM_177990.2	706	Ccg/Acg																																																																															
ATRX	546	MSKCC	GRCh37	X	76845370	76845370	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	47	365	0	ENST00000373344.5:c.6151G>C	p.Glu2051Gln	p.E2051Q	ENST00000373344	NM_000489.3	2051	Gaa/Caa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761295	59761295	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	154	437	0	ENST00000259008.2:c.3112A>T	p.Thr1038Ser	p.T1038S	ENST00000259008	NM_032043.2	1038	Aca/Tca																																																																															
BRD4	23476	MSKCC	GRCh37	19	15379780	15379780	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	149	363	0	ENST00000263377.2:c.359G>A	p.Trp120Ter	p.W120*	ENST00000263377	NM_058243.2	120	tGg/tAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141466	11141466	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs113666806		P-0069333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			788	223	546	0	ENST00000344626.4:c.3443A>G	p.Glu1148Gly	p.E1148G	ENST00000344626	NM_003072.3	1148	gAg/gGg																																																																															
NF1	4763	MSKCC	GRCh37	17	29683585	29683585	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	46	384	0	ENST00000358273.4:c.7723A>C	p.Thr2575Pro	p.T2575P	ENST00000358273	NM_001042492.2	2575	Act/Cct																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737410	145737410	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			918	210	593	0	ENST00000428558.2:c.3277G>T	p.Asp1093Tyr	p.D1093Y	ENST00000428558	NM_004260.3	1093	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0069345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	42	393	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845391	151845391	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	50	379	0	ENST00000262189.6:c.13621C>T	p.Arg4541Ter	p.R4541*	ENST00000262189	NM_170606.2	4541	Cga/Tga																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78435608	78435608	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0069345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	15	210	0	ENST00000370768.2:c.211+1G>C		p.X71_splice	ENST00000370768	NM_003902.3	71																																																																																
RB1	5925	MSKCC	GRCh37	13	48939033	48939033	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	40	151	0	ENST00000267163.4:c.865A>G	p.Lys289Glu	p.K289E	ENST00000267163	NM_000321.2	289	Aaa/Gaa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31495410	31495410	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	35	273	0	ENST00000344624.3:c.1738C>A	p.Pro580Thr	p.P580T	ENST00000344624		580	Ccg/Acg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	35	304	0	ENST00000274335.5:c.1042del	p.Arg348GlufsTer25	p.R348Efs*25	ENST00000274335		348	Cga/ga																																																																															
EZH2	2146	MSKCC	GRCh37	7	148514341	148514342	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0069345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	19	236	0	ENST00000320356.2:c.1382_1383del	p.Arg461IlefsTer8	p.R461Ifs*8	ENST00000320356	NM_004456.4	461	aGG/a																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340368	8340368	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	31	293	0	ENST00000356435.5:c.5228T>G	p.Leu1743Arg	p.L1743R	ENST00000356435		1743	cTc/cGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0069349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	149	319	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259521	55259521	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	155	309	0	ENST00000275493.2:c.2579A>T	p.Lys860Ile	p.K860I	ENST00000275493	NM_005228.3	860	aAa/aTa																																																																															
APC	324	MSKCC	GRCh37	5	112174291	112174291	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	36	371	0	ENST00000257430.4:c.3000C>A	p.Tyr1000Ter	p.Y1000*	ENST00000257430	NM_000038.5	1000	taC/taA																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	55	338	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	34	359	0	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																															
KIT	3815	MSKCC	GRCh37	4	55564516	55564516	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1174814949		P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	75	392	0	ENST00000288135.5:c.404G>A	p.Arg135His	p.R135H	ENST00000288135	NM_000222.2	135	cGc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779211	3779211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783507		P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	14	372	0	ENST00000262367.5:c.5837del	p.Pro1946HisfsTer30	p.P1946Hfs*30	ENST00000262367	NM_004380.2	1946	cCa/ca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	98	590	0	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	47	538	0	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
PARP1	142	MSKCC	GRCh37	1	226568861	226568861	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150379323		P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	50	405	1	ENST00000366794.5:c.1208G>A	p.Arg403Gln	p.R403Q	ENST00000366794	NM_001618.3	403	cGg/cAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3790494	3790494	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867855180		P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	44	383	1	ENST00000262367.5:c.4039C>T	p.Arg1347Trp	p.R1347W	ENST00000262367	NM_004380.2	1347	Cgg/Tgg																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	73	517	6	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346158	89346158	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	67	561	2	ENST00000301030.4:c.6792del	p.Ala2265ProfsTer72	p.A2265Pfs*72	ENST00000301030	NM_001256183.1	2264	ccC/cc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513282	44513287	+	inframe_deletion	In_Frame_Del	DEL	CCACCG	CCACCG	-	rs769920981		P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	17	421	1	ENST00000291552.4:c.648_653del	p.Gly222_Gly223del	p.G222_G223del	ENST00000291552	NM_006758.2	216	ggCGGTGGt/ggt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27022999	27022999	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1436957504		P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	33	417	0	ENST00000324856.7:c.110del	p.Gly37AlafsTer14	p.G37Afs*14	ENST00000324856	NM_006015.4	35	gcG/gc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027196	48027196	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	27	419	0	ENST00000234420.5:c.2079del	p.Lys693AsnfsTer43	p.K693Nfs*43	ENST00000234420	NM_000179.2	692	Aaa/aa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252961	36252961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	36	404	0	ENST00000300305.3:c.401C>T	p.Ala134Val	p.A134V	ENST00000300305		134	gCt/gTt																																																																															
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	36	333	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671654	67671655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	94	444	4	ENST00000264010.4:c.2070dup	p.Glu691ArgfsTer5	p.E691Rfs*5	ENST00000264010	NM_006565.3	688	gta/gtAa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	113	365	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
HGF	3082	MSKCC	GRCh37	7	81358979	81358979	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754502188		P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	60	353	0	ENST00000222390.5:c.982C>T	p.Arg328Cys	p.R328C	ENST00000222390	NM_000601.4	328	Cgt/Tgt																																																																															
TET2	54790	MSKCC	GRCh37	4	106157998	106157998	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	99	488	0	ENST00000380013.4:c.2899C>T	p.Gln967Ter	p.Q967*	ENST00000380013	NM_001127208.2	967	Caa/Taa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251108	99251109	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs746570875		P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	65	469	0	ENST00000268035.6:c.418dup	p.Ala140GlyfsTer5	p.A140Gfs*5	ENST00000268035	NM_000875.3	138	cgg/cGgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428410	49428411	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1284500089		P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	23	497	0	ENST00000301067.7:c.10394dup	p.Pro3466ThrfsTer2	p.P3466Tfs*2	ENST00000301067	NM_003482.3	3465	gga/ggGa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602449	10602449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	77	596	1	ENST00000171111.5:c.1129G>A	p.Val377Met	p.V377M	ENST00000171111	NM_203500.1	377	Gtg/Atg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213485	36213485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	63	539	0	ENST00000222270.7:c.2587G>A	p.Val863Met	p.V863M	ENST00000222270	NM_014727.1	863	Gtg/Atg																																																																															
CD276	80381	MSKCC	GRCh37	15	73994829	73994829	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751833994		P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	20	226	0	ENST00000318443.5:c.313G>A	p.Ala105Thr	p.A105T	ENST00000318443	NM_001024736.1	105	Gca/Aca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281248	15281248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754875491		P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	73	613	0	ENST00000263388.2:c.5008G>A	p.Glu1670Lys	p.E1670K	ENST00000263388	NM_000435.2	1670	Gag/Aag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445019	89445019	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780126700		P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	73	406	0	ENST00000336596.2:c.1339C>T	p.Arg447Trp	p.R447W	ENST00000336596	NM_005233.5	447	Cgg/Tgg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139407932	139407934	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-	rs587778559		P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	35	436	0	ENST00000277541.6:c.2263_2265del	p.Asn755del	p.N755del	ENST00000277541	NM_017617.3	755	AAT/-																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880194	37880195	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	22	458	0	ENST00000269571.5:c.2242dup	p.Ile748AsnfsTer126	p.I748Nfs*126	ENST00000269571		746	-/A																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435668	56435669	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	132	526	0	ENST00000407977.2:c.1468dup	p.Val490GlyfsTer15	p.V490Gfs*15	ENST00000407977		490	gtc/gGtc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	63	440	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981767	63981767	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760471271		P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	78	535	0	ENST00000295900.6:c.2269G>A	p.Gly757Ser	p.G757S	ENST00000295900	NM_000333.3	757	Ggc/Agc																																																																															
MAX	4149	MSKCC	GRCh37	14	65543379	65543379	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	48	442	0	ENST00000358664.4:c.298C>A	p.Arg100Ser	p.R100S	ENST00000358664	NM_002382.4	100	Cgt/Agt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100886	27100886	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1434951491		P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	24	446	0	ENST00000324856.7:c.4168A>G	p.Ser1390Gly	p.S1390G	ENST00000324856	NM_006015.4	1390	Agc/Ggc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261454	16261454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	69	510	0	ENST00000375759.3:c.8719C>T	p.Pro2907Ser	p.P2907S	ENST00000375759	NM_015001.2	2907	Cca/Tca																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149450114	149450115	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	19	421	0	ENST00000286301.3:c.1102_1103del	p.Leu368AlafsTer7	p.L368Afs*7	ENST00000286301	NM_005211.3	368	CTg/g																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46733179	46733179	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1167366835		P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	96	411	0	ENST00000371975.4:c.940A>G	p.Ser314Gly	p.S314G	ENST00000371975	NM_003579.3	314	Agc/Ggc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162743347	162743347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	76	438	0	ENST00000367921.3:c.1817C>A	p.Ala606Asp	p.A606D	ENST00000367921	NM_006182.2	606	gCt/gAt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625188	69625188	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	22	502	0	ENST00000334134.2:c.605del	p.Pro202LeufsTer?	p.P202Lfs*?	ENST00000334134	NM_005247.2	202	cCt/ct																																																																															
MLH1	4292	MSKCC	GRCh37	3	37035066	37035066	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1193754562		P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	72	451	0	ENST00000231790.2:c.28C>T	p.Arg10Trp	p.R10W	ENST00000231790	NM_000249.3	10	Cgg/Tgg																																																																															
KDR	3791	MSKCC	GRCh37	4	55968074	55968075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	45	286	0	ENST00000263923.4:c.2255dup	p.Ile753HisfsTer38	p.I753Hfs*38	ENST00000263923	NM_002253.2	752	ttc/ttTc																																																																															
POT1	25913	MSKCC	GRCh37	7	124467253	124467274	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCTCTGATACTTACAGAATCC	ACCTCTGATACTTACAGAATCC	-			P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	38	248	0	ENST00000357628.3:c.1680_1686+15del		p.X560_splice	ENST00000357628	NM_015450.2	560																																																																																
NEGR1	257194	MSKCC	GRCh37	1	72058512	72058512	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	77	411	0	ENST00000357731.5:c.928C>G	p.Leu310Val	p.L310V	ENST00000357731	NM_173808.2	310	Ctg/Gtg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256949	16256950	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	27	467	0	ENST00000375759.3:c.4220dup	p.Leu1407PhefsTer11	p.L1407Ffs*11	ENST00000375759	NM_015001.2	1405	tct/tcTt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201980374	201980374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762316328		P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	30	520	0	ENST00000359651.3:c.110C>T	p.Ala37Val	p.A37V	ENST00000359651		37	gCc/gTc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129833	55129833	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs1465072853		P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	25	352	0	ENST00000257290.5:c.368-1G>A		p.X123_splice	ENST00000257290	NM_006206.4	123																																																																																
RPS6KB2	6199	MSKCC	GRCh37	11	67196646	67196646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069354-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	52	466	0	ENST00000312629.5:c.175C>T	p.Pro59Ser	p.P59S	ENST00000312629	NM_003952.2	59	Cca/Tca																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0069357-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			561	246	325	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0069357-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	237	251	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155258	55155258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069357-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	247	277	0	ENST00000257290.5:c.2857C>A	p.Leu953Met	p.L953M	ENST00000257290	NM_006206.4	953	Ctg/Atg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624230	89624231	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAG			P-0069357-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			150	70	91	0	ENST00000371953.3:c.6_8dup	p.Ala3dup	p.A3dup	ENST00000371953	NM_000314.4	3	aca/aCAGca																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266133	41266136	+	missense_variant	Missense_Mutation	ONP	CCTT	CCTT	GCTC			P-0069357-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			165	274	309	0	ENST00000349496.5:c.130_133delinsGCTC	p.Pro44_Ser45delinsAlaPro	p.P44_S45delinsAP	ENST00000349496	NM_001904.3	44	CCTTct/GCTCct																																																																															
HGF	3082	MSKCC	GRCh37	7	81331897	81331897	+	stop_lost	Nonstop_Mutation	SNP	C	C	A			P-0069357-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			281	196	193	0	ENST00000222390.5:c.2187G>T	p.Ter729TyrextTer3	p.*729Yext*3	ENST00000222390	NM_000601.4	729	taG/taT																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372331	55372331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069357-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			407	236	423	0	ENST00000297316.4:c.1021C>T	p.Pro341Ser	p.P341S	ENST00000297316	NM_022454.3	341	Ccc/Tcc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719407	190719407	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069357-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			498	298	299	0	ENST00000441310.2:c.1409G>T	p.Gly470Val	p.G470V	ENST00000441310	NM_000534.4	470	gGc/gTc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44515831	44515831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069357-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			348	208	233	0	ENST00000291552.4:c.222G>T	p.Met74Ile	p.M74I	ENST00000291552	NM_006758.2	74	atG/atT																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0069361-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			294	149	404	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0069361-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			261	231	308	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MGA	23269	MSKCC	GRCh37	15	42003184	42003184	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			512	43	376	0	ENST00000219905.7:c.2721C>G	p.Phe907Leu	p.F907L	ENST00000219905	NM_001164273.1	907	ttC/ttG																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0069363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			190	274	415	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
APC	324	MSKCC	GRCh37	5	112178130	112178130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			549	256	402	0	ENST00000257430.4:c.6839C>T	p.Ser2280Leu	p.S2280L	ENST00000257430	NM_000038.5	2280	tCa/tTa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0069363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			479	351	272	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152007064	152007064	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0069363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			694	127	249	0	ENST00000262189.6:c.836C>G	p.Ser279Ter	p.S279*	ENST00000262189	NM_170606.2	279	tCa/tGa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391404	139391404	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770022692		P-0069363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	133	396	0	ENST00000277541.6:c.6787C>T	p.Arg2263Trp	p.R2263W	ENST00000277541	NM_017617.3	2263	Cgg/Tgg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984361	201984361	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			638	322	321	0	ENST00000359651.3:c.1027del	p.Glu343AsnfsTer104	p.E343Nfs*104	ENST00000359651		342	ctG/ct																																																																															
CD79B	974	MSKCC	GRCh37	17	62007580	62007580	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			391	214	399	0	ENST00000392795.3:c.287G>C	p.Arg96Pro	p.R96P	ENST00000392795	NM_001039933.1	96	cGc/cCc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41400098	41400098	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			306	59	271	0	ENST00000373198.4:c.661C>T	p.Gln221Ter	p.Q221*	ENST00000373198	NM_133170.3	221	Cag/Tag																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170002313	170002313	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	58	139	0	ENST00000295797.4:c.1132G>C	p.Asp378His	p.D378H	ENST00000295797	NM_002740.5	378	Gat/Cat																																																																															
TERT	7015	MSKCC	GRCh37	5	1293914	1293914	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069363-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			898	103	447	0	ENST00000310581.5:c.1087A>T	p.Thr363Ser	p.T363S	ENST00000310581	NM_198253.2	363	Acc/Tcc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366162	15366162	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1005077274		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	107	487	0	ENST00000263377.2:c.1993C>T	p.Arg665Cys	p.R665C	ENST00000263377	NM_058243.2	665	Cgt/Tgt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	67	367	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	79	435	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514495		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	146	605	0	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533703	63533703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	119	630	0	ENST00000307078.5:c.1451G>A	p.Gly484Asp	p.G484D	ENST00000307078	NM_004655.3	484	gGt/gAt																																																																															
AR	367	MSKCC	GRCh37	X	66765149	66765151	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-	rs764402637		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	14	166	2	ENST00000374690.3:c.170_172del	p.Leu57del	p.L57del	ENST00000374690	NM_000044.3	54	tTGCtg/ttg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974721	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	82	560	1	ENST00000304494.5:c.106del	p.Ala36ArgfsTer17	p.A36Rfs*17	ENST00000304494	NM_000077.4	36	Gcg/cg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	98	507	6	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	101	535	8	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs769210858		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	96	518	3	ENST00000361632.4:c.1404del	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	85	538	1	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																																																															
EZH2	2146	MSKCC	GRCh37	7	148511172	148511172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	145	484	1	ENST00000320356.2:c.1730C>T	p.Pro577Leu	p.P577L	ENST00000320356	NM_004456.4	577	cCg/cTg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21619838	21619838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746455173		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	92	409	1	ENST00000382592.4:c.328G>A	p.Ala110Thr	p.A110T	ENST00000382592	NM_014572.2	110	Gca/Aca																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	93	514	1	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655413	45655413	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	124	551	0	ENST00000407780.3:c.439del	p.His147ThrfsTer15	p.H147Tfs*15	ENST00000407780	NM_001283052.1	147	Cac/ac																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612344	1612344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1320707074		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	97	536	0	ENST00000344749.5:c.1675G>A	p.Val559Met	p.V559M	ENST00000344749	NM_001136139.2	559	Gtg/Atg																																																																															
KIT	3815	MSKCC	GRCh37	4	55592079	55592079	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200518498		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	98	404	0	ENST00000288135.5:c.1403C>T	p.Pro468Leu	p.P468L	ENST00000288135	NM_000222.2	468	cCg/cTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	54	394	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180052980	180052980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	104	657	0	ENST00000261937.6:c.1310G>A	p.Arg437His	p.R437H	ENST00000261937	NM_182925.4	437	cGt/cAt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40474420	40474420	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs747639500		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	87	517	0	ENST00000264657.5:c.1981G>T	p.Asp661Tyr	p.D661Y	ENST00000264657	NM_139276.2	661	Gat/Tat																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870595	40870595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	144	522	0	ENST00000428826.2:c.808C>T	p.Pro270Ser	p.P270S	ENST00000428826		270	Ccc/Tcc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865628	57865628	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	87	613	0	ENST00000228682.2:c.3109del	p.Leu1037TrpfsTer23	p.L1037Wfs*23	ENST00000228682	NM_005269.2	1035	aaC/aa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918754	50918754	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754832710		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	116	536	0	ENST00000440232.2:c.2624G>A	p.Arg875His	p.R875H	ENST00000440232	NM_002691.3	875	cGc/cAc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001595	150001595	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	54	361	0	ENST00000253339.5:c.2011-2A>G		p.X671_splice	ENST00000253339		671																																																																																
SETD2	29072	MSKCC	GRCh37	3	47139532	47139532	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	114	440	1	ENST00000409792.3:c.5055C>A	p.Cys1685Ter	p.C1685*	ENST00000409792	NM_014159.6	1685	tgC/tgA																																																																															
RARA	5914	MSKCC	GRCh37	17	38512474	38512474	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	97	542	0	ENST00000254066.5:c.1385C>A	p.Pro462Gln	p.P462Q	ENST00000254066	NM_000964.3	462	cCg/cAg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180039600	180039600	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	85	428	0	ENST00000261937.6:c.3443T>C	p.Met1148Thr	p.M1148T	ENST00000261937	NM_182925.4	1148	aTg/aCg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222265	2222265	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369350082		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	107	627	0	ENST00000398665.3:c.3097G>A	p.Gly1033Ser	p.G1033S	ENST00000398665	NM_032482.2	1033	Ggc/Agc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096639	178096639	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs779897588		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	148	410	0	ENST00000397062.3:c.692C>G	p.Ser231Cys	p.S231C	ENST00000397062	NM_006164.4	231	tCt/tGt																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445998	29445999	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	81	513	2	ENST00000544604.2:c.1835dup	p.Ser613LeufsTer68	p.S613Lfs*68	ENST00000544604	NM_001206998.1	610	gcg/gcGg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279873	29279873	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs978074103		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	35	272	0	ENST00000544604.2:c.119T>C	p.Leu40Pro	p.L40P	ENST00000544604	NM_001206998.1	40	cTg/cCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992996	72992996	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs983979744		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	106	573	0	ENST00000268489.5:c.1049C>T	p.Pro350Leu	p.P350L	ENST00000268489	NM_006885.3	350	cCt/cTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096048	11096048	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	107	559	0	ENST00000344626.4:c.326del	p.Pro109ArgfsTer194	p.P109Rfs*194	ENST00000344626	NM_003072.3	108	Ccc/cc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111886013	111886013	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	129	651	0	ENST00000341259.2:c.1635G>T	p.Glu545Asp	p.E545D	ENST00000341259	NM_005475.2	545	gaG/gaT																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38785191	38785191	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766200637		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	126	431	0	ENST00000348513.6:c.1082C>T	p.Thr361Met	p.T361M	ENST00000348513	NM_003079.4	361	aCg/aTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178623	56178623	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	113	482	0	ENST00000399503.3:c.3596A>G	p.Gln1199Arg	p.Q1199R	ENST00000399503	NM_005921.1	1199	cAg/cGg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212522516	212522516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	78	491	0	ENST00000342788.4:c.1909C>T	p.Pro637Ser	p.P637S	ENST00000342788	NM_005235.2	637	Cca/Tca																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982090	201982090	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41270965		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	124	510	0	ENST00000359651.3:c.614G>A	p.Arg205Gln	p.R205Q	ENST00000359651		205	cGg/cAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221331	1221331	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	243	629	0	ENST00000326873.7:c.854T>C	p.Leu285Pro	p.L285P	ENST00000326873	NM_000455.4	285	cTg/cCg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149441304	149441304	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	113	540	0	ENST00000286301.3:c.1735del	p.Arg579GlyfsTer33	p.R579Gfs*33	ENST00000286301	NM_005211.3	579	Cgg/gg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311610	15311610	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1311684711		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	87	793	0	ENST00000263388.2:c.107C>T	p.Pro36Leu	p.P36L	ENST00000263388	NM_000435.2	36	cCg/cTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843570	3843570	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	108	545	0	ENST00000262367.5:c.1033A>G	p.Thr345Ala	p.T345A	ENST00000262367	NM_004380.2	345	Act/Gct																																																																															
EZH1	2145	MSKCC	GRCh37	17	40858065	40858065	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	108	465	0	ENST00000428826.2:c.1799T>C	p.Val600Ala	p.V600A	ENST00000428826		600	gTt/gCt																																																																															
EP300	2033	MSKCC	GRCh37	22	41572378	41572378	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	130	584	0	ENST00000263253.7:c.4907A>G	p.Asp1636Gly	p.D1636G	ENST00000263253	NM_001429.3	1636	gAc/gGc																																																																															
MGA	23269	MSKCC	GRCh37	15	42019417	42019417	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	61	467	2	ENST00000219905.7:c.3470A>G	p.Tyr1157Cys	p.Y1157C	ENST00000219905	NM_001164273.1	1157	tAc/tGc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740360	145740360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766354337		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	105	537	0	ENST00000428558.2:c.1580C>T	p.Thr527Met	p.T527M	ENST00000428558	NM_004260.3	527	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112179143	112179143	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs863224551		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	84	474	0	ENST00000257430.4:c.7852A>G	p.Asn2618Asp	p.N2618D	ENST00000257430	NM_000038.5	2618	Aat/Gat																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440761	56440761	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	275	583	0	ENST00000407977.2:c.457C>T	p.Gln153Ter	p.Q153*	ENST00000407977		153	Cag/Tag																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40353883	40353883	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	96	459	1	ENST00000293328.3:c.2238-1G>T		p.X746_splice	ENST00000293328	NM_012448.3	746																																																																																
PREX2	80243	MSKCC	GRCh37	8	69104668	69104668	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	132	479	0	ENST00000288368.4:c.4512T>A	p.Ser1504Arg	p.S1504R	ENST00000288368	NM_024870.2	1504	agT/agA																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11100015	11100015	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs972341316		P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	112	456	0	ENST00000344626.4:c.1141C>T	p.Arg381Ter	p.R381*	ENST00000344626	NM_003072.3	381	Cga/Tga																																																																															
ERG	2078	MSKCC	GRCh37	21	39755644	39755644	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	107	530	0	ENST00000288319.7:c.1121A>T	p.Asp374Val	p.D374V	ENST00000288319	NM_182918.3	374	gAc/gTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396223	139396223	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	94	548	0	ENST00000277541.6:c.5615T>A	p.Met1872Lys	p.M1872K	ENST00000277541	NM_017617.3	1872	aTg/aAg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120493356	120493356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	121	502	2	ENST00000256646.2:c.2470C>T	p.Pro824Ser	p.P824S	ENST00000256646	NM_024408.3	824	Cca/Tca																																																																															
REST	5978	MSKCC	GRCh37	4	57796314	57796315	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	82	502	0	ENST00000309042.7:c.1296dup	p.Arg433ThrfsTer4	p.R433Tfs*4	ENST00000309042	NM_005612.4	430	-/A																																																																															
CD276	80381	MSKCC	GRCh37	15	73996795	73996795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	77	398	0	ENST00000318443.5:c.1351G>T	p.Gly451Cys	p.G451C	ENST00000318443	NM_001024736.1	451	Ggc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0069378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	468	305	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719271	61719271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	40	322	0	ENST00000401558.2:c.1786C>T	p.Arg596Cys	p.R596C	ENST00000401558	NM_003400.3	596	Cgc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42058874	42058874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	133	396	0	ENST00000219905.7:c.8594G>A	p.Ser2865Asn	p.S2865N	ENST00000219905	NM_001164273.1	2865	aGt/aAt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619007	37619008	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0069378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			899	137	461	0	ENST00000447079.4:c.683_684insG	p.Asp229Ter	p.D229*	ENST00000447079	NM_015083.1	228	tct/tcGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs942158624		P-0069383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	105	462	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806564	1806564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	85	520	0	ENST00000260795.2:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000260795		427	tCc/tTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465561	8465561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	53	399	0	ENST00000356435.5:c.3619del	p.Asp1207MetfsTer24	p.D1207Mfs*24	ENST00000356435		1207	Gat/at																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43746222	43746222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	92	416	0	ENST00000523873.1:c.341G>A	p.Gly114Asp	p.G114D	ENST00000523873		114	gGc/gAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288589	15288589	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	24	293	0	ENST00000263388.2:c.4150G>T	p.Glu1384Ter	p.E1384*	ENST00000263388	NM_000435.2	1384	Gag/Tag																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800860	120800860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	51	350	0	ENST00000257552.2:c.388G>A	p.Glu130Lys	p.E130K	ENST00000257552	NM_002442.3	130	Gag/Aag																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664724	138664724	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	55	334	0	ENST00000330315.3:c.841C>A	p.Pro281Thr	p.P281T	ENST00000330315	NM_023067.3	281	Ccg/Acg																																																																															
POLE	5426	MSKCC	GRCh37	12	133226301	133226301	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0069383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	46	435	0	ENST00000320574.5:c.3757del	p.Glu1253LysfsTer108	p.E1253Kfs*108	ENST00000320574	NM_006231.2	1253	Gaa/aa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455042	50455042	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0069383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	32	351	0	ENST00000331340.3:c.590-1G>T		p.X197_splice	ENST00000331340	NM_006060.4	197																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1801034	1801034	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	39	489	0	ENST00000260795.2:c.163G>T	p.Asp55Tyr	p.D55Y	ENST00000260795		55	Gat/Tat																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804392	46804392	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	89	471	0	ENST00000290295.7:c.615G>T	p.Gln205His	p.Q205H	ENST00000290295	NM_006361.5	205	caG/caT																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355095	73355095	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1246775389		P-0069383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	108	317	0	ENST00000377767.4:c.275A>G	p.Gln92Arg	p.Q92R	ENST00000377767	NM_014953.3	92	cAa/cGa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846234	156846234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	70	430	0	ENST00000524377.1:c.1675C>A	p.Arg559Ser	p.R559S	ENST00000524377	NM_002529.3	559	Cgt/Agt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98268800	98268800	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	47	391	0	ENST00000331920.6:c.283C>A	p.Gln95Lys	p.Q95K	ENST00000331920	NM_000264.3	95	Caa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0069389-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			314	38	186	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670325	134670325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069389-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			657	40	443	0	ENST00000398015.3:c.236G>A	p.Arg79Gln	p.R79Q	ENST00000398015	NM_004441.4	79	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578499	7578499	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs786203071		P-0069389-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			611	105	536	0	ENST00000269305.4:c.431A>C	p.Gln144Pro	p.Q144P	ENST00000269305	NM_001126112.2	144	cAg/cCg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106730	27106730	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773818181		P-0069389-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			594	159	570	0	ENST00000324856.7:c.6341C>T	p.Pro2114Leu	p.P2114L	ENST00000324856	NM_006015.4	2114	cCg/cTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970981	21970981	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs104894098		P-0069389-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			569	144	595	0	ENST00000304494.5:c.377T>A	p.Val126Asp	p.V126D	ENST00000304494	NM_000077.4	126	gTc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913240		P-0069389-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			512	100	291	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250323	110250323	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069389-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			522	117	459	0	ENST00000374672.4:c.352G>T	p.Glu118Ter	p.E118*	ENST00000374672	NM_004235.4	118	Gag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041678	47041678	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0069389-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			586	99	516	0	ENST00000329236.7:c.1669G>T	p.Glu557Ter	p.E557*	ENST00000329236	NM_001204466.1	557	Gag/Tag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25471070	25471070	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0069396-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			425	91	343	0	ENST00000264709.3:c.691C>T	p.Gln231Ter	p.Q231*	ENST00000264709	NM_175629.2	231	Cag/Tag																																																																															
EP300	2033	MSKCC	GRCh37	22	41513664	41513664	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			709	39	652	0	ENST00000263253.7:c.568C>T	p.Gln190Ter	p.Q190*	ENST00000263253	NM_001429.3	190	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0069413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	308	498	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108200961	108200961	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782310		P-0069413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	146	478	0	ENST00000278616.4:c.7328G>A	p.Arg2443Gln	p.R2443Q	ENST00000278616	NM_000051.3	2443	cGa/cAa																																																																															
ATM	472	MSKCC	GRCh37	11	108172516	108172516	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0069413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	291	419	0	ENST00000278616.4:c.5319G>T	p.Lys1773Asn	p.K1773N	ENST00000278616	NM_000051.3	1773	aaG/aaT																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442080	52442080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	321	499	0	ENST00000460680.1:c.269C>T	p.Ser90Phe	p.S90F	ENST00000460680	NM_004656.3	90	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0069413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	224	446	1	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940117	49940117	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs150736542		P-0069413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	376	623	0	ENST00000296474.3:c.926G>C	p.Arg309Pro	p.R309P	ENST00000296474	NM_002447.2	309	cGg/cCg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15295819	15295819	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			768	171	568	0	ENST00000263388.2:c.2308G>T	p.Glu770Ter	p.E770*	ENST00000263388	NM_000435.2	770	Gaa/Taa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262148	10262148	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	347	630	1	ENST00000340748.4:c.2143C>A	p.Pro715Thr	p.P715T	ENST00000340748		715	Ccc/Acc																																																																															
PARP1	142	MSKCC	GRCh37	1	226549685	226549685	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	115	403	0	ENST00000366794.5:c.2948C>G	p.Ser983Cys	p.S983C	ENST00000366794	NM_001618.3	983	tCt/tGt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729974	30729974	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs397516840		P-0069413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	277	485	0	ENST00000359013.4:c.1570G>T	p.Glu524Ter	p.E524*	ENST00000359013	NM_001024847.2	524	Gaa/Taa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5044504	5044504	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs925878120		P-0069413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	87	335	0	ENST00000381652.3:c.452C>G	p.Ser151Cys	p.S151C	ENST00000381652	NM_004972.3	151	tCt/tGt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639710	3639743	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGAAAACTTCTGTGCGACTTCGTTCCCTTCCC	ACAGAAAACTTCTGTGCGACTTCGTTCCCTTCCC	-			P-0069413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			768	474	659	0	ENST00000294008.3:c.3896_3929del	p.Arg1299ThrfsTer65	p.R1299Tfs*65	ENST00000294008	NM_032444.2	1299	aGGGAAGGGAACGAAGTCGCACAGAAGTTTTCTGTc/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0069414-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	24	335	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48586237	48586237	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A	rs878854769		P-0069414-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	30	224	0	ENST00000342988.3:c.906G>A	p.Trp302Ter	p.W302*	ENST00000342988	NM_005359.5	302	tgG/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0069414-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	35	220	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0069447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	115	334	0	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0069447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	20	295	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0069447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	54	166	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	99	362	0	ENST00000263967.3:c.3073A>T	p.Thr1025Ser	p.T1025S	ENST00000263967	NM_006218.2	1025	Acc/Tcc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8331643	8331643	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770713312		P-0069447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	48	372	1	ENST00000356435.5:c.5473G>A	p.Gly1825Ser	p.G1825S	ENST00000356435		1825	Ggc/Agc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56171089	56171095	+	frameshift_variant	Frame_Shift_Del	DEL	GTCAATG	GTCAATG	-			P-0069447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	87	360	0	ENST00000399503.3:c.1920_1926del	p.Met641ValfsTer13	p.M641Vfs*13	ENST00000399503	NM_005921.1	639	ctGTCAATG/ct																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178590	56178591	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0069447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	49	376	0	ENST00000399503.3:c.3566dup	p.Leu1189PhefsTer23	p.L1189Ffs*23	ENST00000399503	NM_005921.1	1188	gct/gcTt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5265192	5265192	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	109	351	0	ENST00000357368.4:c.395C>G	p.Ser132Cys	p.S132C	ENST00000357368	NM_002850.3	132	tCt/tGt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279352	18279352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	116	398	0	ENST00000222254.8:c.1804G>A	p.Glu602Lys	p.E602K	ENST00000222254	NM_005027.3	602	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198269871	198269871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	128	316	0	ENST00000335508.6:c.1468G>A	p.Glu490Lys	p.E490K	ENST00000335508	NM_012433.2	490	Gaa/Aaa																																																																															
MGA	23269	MSKCC	GRCh37	15	42002918	42002918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	94	283	0	ENST00000219905.7:c.2455C>A	p.Arg819Ser	p.R819S	ENST00000219905	NM_001164273.1	819	Cgt/Agt																																																																															
CDH1	999	MSKCC	GRCh37	16	68867239	68867239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	98	395	0	ENST00000261769.5:c.2486C>T	p.Ser829Phe	p.S829F	ENST00000261769	NM_004360.3	829	tCt/tTt																																																																															
NBN	4683	MSKCC	GRCh37	8	90955581	90955581	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			856	79	261	0	ENST00000265433.3:c.2084G>C	p.Gly695Ala	p.G695A	ENST00000265433	NM_002485.4	695	gGa/gCa																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793847	89793847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	119	393	0	ENST00000336032.3:c.916G>A	p.Glu306Lys	p.E306K	ENST00000336032	NM_006813.2	306	Gaa/Aaa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931931	39931931	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	154	412	0	ENST00000378444.4:c.2668G>C	p.Glu890Gln	p.E890Q	ENST00000378444	NM_001123385.1	890	Gag/Cag																																																																															
ATR	545	MSKCC	GRCh37	3	142176500	142176500	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	116	261	0	ENST00000350721.4:c.7601G>C	p.Arg2534Thr	p.R2534T	ENST00000350721	NM_001184.3	2534	aGa/aCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518165	187518165	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	91	398	0	ENST00000441802.2:c.12529A>T	p.Ile4177Phe	p.I4177F	ENST00000441802	NM_005245.3	4177	Att/Ttt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374368	138374368	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0069451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	105	304	0	ENST00000289153.2:c.3076G>A	p.Asp1026Asn	p.D1026N	ENST00000289153	NM_006219.2	1026	Gac/Aac																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056998	180056998	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	120	450	0	ENST00000261937.6:c.621G>C	p.Glu207Asp	p.E207D	ENST00000261937	NM_182925.4	207	gaG/gaC																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112052	115112052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	119	451	0	ENST00000257566.3:c.1688C>T	p.Ser563Phe	p.S563F	ENST00000257566	NM_016569.3	563	tCt/tTt																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112888312	112888312	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507518		P-0069451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	95	310	0	ENST00000351677.2:c.328G>A	p.Glu110Lys	p.E110K	ENST00000351677	NM_002834.3	110	Gaa/Aaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257426	16257426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0069451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	106	382	0	ENST00000375759.3:c.4691A>C	p.Gln1564Pro	p.Q1564P	ENST00000375759	NM_015001.2	1564	cAg/cCg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2213936	2213936	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs748444237		P-0069451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	140	437	0	ENST00000326181.6:c.15G>C	p.Lys5Asn	p.K5N	ENST00000326181	NM_032271.2	5	aaG/aaC																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2636729	2636729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	126	410	0	ENST00000342085.4:c.1178C>T	p.Ser393Phe	p.S393F	ENST00000342085	NM_002613.4	393	tCc/tTc																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544947	86544947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	59	286	0	ENST00000262426.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000262426	NM_001451.2	258	Gag/Aag																																																																															
EP300	2033	MSKCC	GRCh37	22	41574715	41574715	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	134	468	0	ENST00000263253.7:c.7000C>T	p.Gln2334Ter	p.Q2334*	ENST00000263253	NM_001429.3	2334	Cag/Tag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350629	89350629	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0069451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	115	324	0	ENST00000301030.4:c.2321C>G	p.Ser774Ter	p.S774*	ENST00000301030	NM_001256183.1	774	tCa/tGa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6048629	6048629	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A	rs772406975		P-0069457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	72	397	0	ENST00000265849.7:c.22A>T	p.Ser8Cys	p.S8C	ENST00000265849	NM_000535.5	8	Agt/Tgt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509101	106509101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1209717028		P-0069457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	41	283	0	ENST00000359195.3:c.1095C>G	p.Ile365Met	p.I365M	ENST00000359195	NM_002649.2	365	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0069463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	326	388	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14317346	14317346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	36	293	0	ENST00000256196.4:c.164G>A	p.Cys55Tyr	p.C55Y	ENST00000256196		55	tGt/tAt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944151	71944151	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1456428824		P-0069463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	178	370	0	ENST00000298229.2:c.1984C>T	p.Arg662Cys	p.R662C	ENST00000298229	NM_001567.3	662	Cgc/Tgc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781512	9781513	+	missense_variant	Missense_Mutation	DNP	CT	CT	AG			P-0069463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	27	278	0	ENST00000377346.4:c.1822_1823inv	p.Leu608Arg	p.L608R	ENST00000377346	NM_005026.3	608	CTg/AGg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939391	71939391	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0069463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	30	386	0	ENST00000298229.2:c.247-1G>C		p.X83_splice	ENST00000298229	NM_001567.3	83																																																																																
VHL	7428	MSKCC	GRCh37	3	10191516	10191516	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0069463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			58	289	286	0	ENST00000256474.2:c.509T>G	p.Val170Gly	p.V170G	ENST00000256474	NM_000551.3	170	gTc/gGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0069464-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	139	303	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578198	7578199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069464-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	195	416	0	ENST00000269305.4:c.650dup	p.Val218GlyfsTer4	p.V218Gfs*4	ENST00000269305	NM_001126112.2	217	gtg/gtTg																																																																															
GAB1	2549	MSKCC	GRCh37	4	144361409	144361409	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069464-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	184	419	0	ENST00000262994.4:c.1459A>G	p.Met487Val	p.M487V	ENST00000262994	NM_002039.3	487	Atg/Gtg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751543	57751543	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0069464-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	164	382	0	ENST00000274289.3:c.1448T>A	p.Leu483Gln	p.L483Q	ENST00000274289	NM_006622.3	483	cTg/cAg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244417	41244417	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069464-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	34	363	0	ENST00000357654.3:c.3131T>C	p.Ile1044Thr	p.I1044T	ENST00000357654	NM_007294.3	1044	aTt/aCt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041593	47041593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0069464-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	164	397	0	ENST00000329236.7:c.1584del	p.Tyr529ThrfsTer97	p.Y529Tfs*97	ENST00000329236	NM_001204466.1	528	ctG/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577541	7577542	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TCATGCCGCCCATGCAGGAACTGTTACACATGTAGTTGTAGTGGATGGTGGTACAG			P-0069465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			797	96	363	0	ENST00000269305.4:c.684_739dup	p.Asn247ThrfsTer19	p.N247Tfs*19	ENST00000269305	NM_001126112.2	247	aac/aCTGTACCACCATCCACTACAACTACATGTGTAACAGTTCCTGCATGGGCGGCATGAac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0069487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	131	316	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
IRF4	3662	MSKCC	GRCh37	6	401555	401555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	49	379	0	ENST00000380956.4:c.877C>T	p.Pro293Ser	p.P293S	ENST00000380956	NM_001195286.1	293	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574032	7574032	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0069487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	74	243	0	ENST00000269305.4:c.995T>A	p.Ile332Asn	p.I332N	ENST00000269305	NM_001126112.2	332	aTc/aAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039905	47039905	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0069487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	65	214	0	ENST00000329236.7:c.1014G>T	p.Gln338His	p.Q338H	ENST00000329236	NM_001204466.1	338	caG/caT																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26101053	26101053	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0069535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	139	445	0	ENST00000435504.4:c.39G>A	p.Trp13Ter	p.W13*	ENST00000435504		13	tgG/tgA																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0069536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	13	433	0				ENST00000310581	NM_198253.2																																																																																	
STK11	6794	MSKCC	GRCh37	19	1220717	1220717	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs587782018		P-0069536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	31	453	0	ENST00000326873.7:c.734+1G>T		p.X245_splice	ENST00000326873	NM_000455.4	245																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602763	10602763	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	41	602	0	ENST00000171111.5:c.815G>C	p.Arg272Pro	p.R272P	ENST00000171111	NM_203500.1	272	cGc/cCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0069536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	12	312	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609940	81609940	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	38	601	0	ENST00000298171.2:c.1538C>A	p.Thr513Lys	p.T513K	ENST00000298171	NM_000369.2	513	aCg/aAg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633454	3633454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	40	497	0	ENST00000294008.3:c.4797C>A	p.Phe1599Leu	p.F1599L	ENST00000294008	NM_032444.2	1599	ttC/ttA																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459508	50459508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	29	402	0	ENST00000331340.3:c.797G>T	p.Arg266Ile	p.R266I	ENST00000331340	NM_006060.4	266	aGa/aTa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813626	50813626	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149427272		P-0069544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	75	255	0	ENST00000398568.2:c.1180C>T	p.Arg394Cys	p.R394C	ENST00000398568	NM_001042412.1	394	Cgt/Tgt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120497813	120497813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	105	330	0	ENST00000256646.2:c.2069C>T	p.Pro690Leu	p.P690L	ENST00000256646	NM_024408.3	690	cCc/cTc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15374292	15374292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0069544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	82	284	0	ENST00000263377.2:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000263377	NM_058243.2	427	tCc/tTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0069549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	184	282	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0069549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	105	281	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs483352697		P-0069549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	260	342	0	ENST00000269305.4:c.587G>A	p.Arg196Gln	p.R196Q	ENST00000269305	NM_001126112.2	196	cGa/cAa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039708	47039708	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0069549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	115	329	2	ENST00000329236.7:c.926G>T	p.Arg309Met	p.R309M	ENST00000329236	NM_001204466.1	309	aGg/aTg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1941450	1941450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	107	274	0	ENST00000382895.3:c.1826C>T	p.Ser609Leu	p.S609L	ENST00000382895	NM_133330.2	609	tCa/tTa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012392	176012392	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	147	223	0	ENST00000367669.3:c.1542G>C	p.Lys514Asn	p.K514N	ENST00000367669	NM_022457.5	514	aaG/aaC																																																																															
BTK	695	MSKCC	GRCh37	X	100608974	100608975	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	TA	TA	AT			P-0069549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	41	198	0	ENST00000308731.7:c.1633_1634delinsAT	p.Tyr545Ile	p.Y545I	ENST00000308731	NM_000061.2	545	TAt/ATt																																																																															
NF1	4763	MSKCC	GRCh37	17	29587504	29587504	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	72	225	0	ENST00000358273.4:c.4548G>C	p.Glu1516Asp	p.E1516D	ENST00000358273	NM_001042492.2	1516	gaG/gaC																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984530	72984530	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	122	351	0	ENST00000268489.5:c.3054C>G	p.Ile1018Met	p.I1018M	ENST00000268489	NM_006885.3	1018	atC/atG																																																																															
AR	367	MSKCC	GRCh37	X	66766450	66766450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0069549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	50	272	0	ENST00000374690.3:c.1462C>A	p.Gln488Lys	p.Q488K	ENST00000374690	NM_000044.3	488	Cag/Aag																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020769	26020769	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	145	329	0	ENST00000357647.3:c.52C>G	p.Arg18Gly	p.R18G	ENST00000357647	NM_003529.2	18	Cgc/Ggc																																																																															
ATM	472	MSKCC	GRCh37	11	108168106	108168106	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	66	175	0	ENST00000278616.4:c.5002C>G	p.Leu1668Val	p.L1668V	ENST00000278616	NM_000051.3	1668	Cta/Gta																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0069550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	166	387	1	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936539	150936539	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	68	319	0	ENST00000271640.5:c.3738G>C	p.Trp1246Cys	p.W1246C	ENST00000271640	NM_001145415.1	1246	tgG/tgC																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934839	49934839	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0069550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	57	376	0	ENST00000296474.3:c.2057T>C	p.Leu686Pro	p.L686P	ENST00000296474	NM_002447.2	686	cTg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0069551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	56	295	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0069551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	326	230	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974720	21974720	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs200382984		P-0069551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	37	363	0	ENST00000304494.5:c.107C>G	p.Ala36Gly	p.A36G	ENST00000304494	NM_000077.4	36	gCg/gGg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974715	21974719	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGC	GCAGC	-			P-0069551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	36	358	0	ENST00000304494.5:c.108_112del	p.Leu37GlnfsTer5	p.L37Qfs*5	ENST00000304494	NM_000077.4	36	gcGCTGCcc/gccc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115726	8115856	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTC	AAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTC	-			P-0069552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			970	454	364	0	ENST00000346208.3:c.1072_1202del	p.Lys358LeufsTer105	p.K358Lfs*105	ENST00000346208		358	AAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTCc/c																																																																															
CARD11	84433	MSKCC	GRCh37	7	2963938	2963938	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0069552-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			89	89	465	0	ENST00000396946.4:c.1869C>G	p.His623Gln	p.H623Q	ENST00000396946	NM_032415.4	623	caC/caG																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870877	12870877	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375297371		P-0002838-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			685	50	362	0	ENST00000228872.4:c.104C>T	p.Pro35Leu	p.P35L	ENST00000228872	NM_004064.3	35	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577157	7577157	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0002838-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			454	63	299	0	ENST00000269305.4:c.783-2A>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
TGFBR1	7046	MSKCC	GRCh37	9	101894916	101894916	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1060502040		P-0002838-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			525	54	346	0	ENST00000374994.4:c.469C>T	p.Arg157Ter	p.R157*	ENST00000374994	NM_004612.2	157	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434061	49434061	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002838-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			558	99	319	0	ENST00000301067.7:c.7492C>G	p.Leu2498Val	p.L2498V	ENST00000301067	NM_003482.3	2498	Ctg/Gtg																																																																															
POLE	5426	MSKCC	GRCh37	12	133219271	133219271	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002838-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			571	68	357	0	ENST00000320574.5:c.4773G>A	p.Trp1591Ter	p.W1591*	ENST00000320574	NM_006231.2	1591	tgG/tgA																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489840	40489840	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002838-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			769	88	419	0	ENST00000264657.5:c.586A>G	p.Thr196Ala	p.T196A	ENST00000264657	NM_139276.2	196	Acc/Gcc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260048	19260048	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1211742770		P-0002838-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			589	77	344	0	ENST00000162023.5:c.245C>G	p.Thr82Ser	p.T82S	ENST00000162023		82	aCt/aGt																																																																															
KDR	3791	MSKCC	GRCh37	4	55971008	55971008	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002838-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			513	70	345	0	ENST00000263923.4:c.1789G>T	p.Glu597Ter	p.E597*	ENST00000263923	NM_002253.2	597	Gag/Tag																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133311	38133311	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002838-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			902	2038	319	0	ENST00000317025.8:c.4162G>C	p.Asp1388His	p.D1388H	ENST00000317025	NM_023034.1	1388	Gat/Cat																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139407880	139407880	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002838-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			607	79	390	0	ENST00000277541.6:c.2317del	p.Ser773ValfsTer29	p.S773Vfs*29	ENST00000277541	NM_017617.3	773	Agt/gt																																																																															
MED12	9968	MSKCC	GRCh37	X	70349263	70349263	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002838-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			319	81	147	0	ENST00000374080.3:c.3675G>C	p.Lys1225Asn	p.K1225N	ENST00000374080		1225	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0004701-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	27	557	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004701-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			198	18	344	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PAX5	5079	MSKCC	GRCh37	9	36923422	36923422	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004701-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	23	528	0	ENST00000358127.4:c.840T>A	p.Asn280Lys	p.N280K	ENST00000358127	NM_001280556.1	280	aaT/aaA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0004994-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			813	253	363	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061636	38061636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004994-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			453	355	407	0	ENST00000250448.2:c.353C>T	p.Ala118Val	p.A118V	ENST00000250448	NM_004496.3	118	gCg/gTg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143130136	143130136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004994-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			322	18	312	0	ENST00000262992.4:c.880G>A	p.Asp294Asn	p.D294N	ENST00000262992	NM_001101669.1	294	Gac/Aac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123691	11123691	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004994-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	191	342	0	ENST00000344626.4:c.2341A>G	p.Met781Val	p.M781V	ENST00000344626	NM_003072.3	781	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			225	177	370	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			297	62	190	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			144	92	141	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001278	150001278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			131	85	225	0	ENST00000253339.5:c.2326G>T	p.Asp776Tyr	p.D776Y	ENST00000253339		776	Gac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112175482	112175482	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022181-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			239	293	206	0	ENST00000257430.4:c.4191del	p.Ser1398ValfsTer17	p.S1398Vfs*17	ENST00000257430	NM_000038.5	1397	gaG/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0028832-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			467	227	236	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
CDH1	999	MSKCC	GRCh37	16	68844210	68844211	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028832-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			355	210	326	0	ENST00000261769.5:c.801dup	p.Lys268Ter	p.K268*	ENST00000261769	NM_004360.3	266	-/T																																																																															
JAK3	3718	MSKCC	GRCh37	19	17948869	17948869	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028832-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			718	180	427	0	ENST00000458235.1:c.1573G>A	p.Glu525Lys	p.E525K	ENST00000458235	NM_000215.3	525	Gag/Aag																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966551	36966551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768417029		P-0028832-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			515	150	336	0	ENST00000358127.4:c.775G>A	p.Glu259Lys	p.E259K	ENST00000358127	NM_001280556.1	259	Gag/Aag																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561523	9561523	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs201196548		P-0028832-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			640	229	417	0	ENST00000353224.5:c.259G>C	p.Glu87Gln	p.E87Q	ENST00000353224	NM_177990.2	87	Gag/Cag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911258	32911258	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028832-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			614	249	357	0	ENST00000380152.3:c.2766C>G	p.Phe922Leu	p.F922L	ENST00000380152		922	ttC/ttG																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911045	32911045	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028832-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			563	196	304	0	ENST00000380152.3:c.2553C>G	p.Phe851Leu	p.F851L	ENST00000380152		851	ttC/ttG																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858447	9858447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030430-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			419	23	376	0	ENST00000330684.3:c.2954C>T	p.Pro985Leu	p.P985L	ENST00000330684	NM_001134407.1	985	cCt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398286	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0030430-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			354	49	208	0	ENST00000256078.4:c.33_34delinsCT	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	11	gcTGgt/gcCTgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044861	47044861	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030430-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			197	17	231	0	ENST00000329236.7:c.1954del	p.Ala652GlnfsTer72	p.A652Qfs*72	ENST00000329236	NM_001204466.1	651	gtG/gt																																																																															
CTR9	9646	MSKCC	GRCh37	11	10776584	10776584	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030430-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			519	29	351	0	ENST00000361367.2:c.224A>G	p.Tyr75Cys	p.Y75C	ENST00000361367	NM_014633.3	75	tAt/tGt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176132020	176132020	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030430-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			368	22	283	0	ENST00000367669.3:c.747G>T	p.Lys249Asn	p.K249N	ENST00000367669	NM_022457.5	249	aaG/aaT																																																																															
NUP93	9688	MSKCC	GRCh37	16	56872914	56872914	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs777069106		P-0030430-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			441	26	371	0	ENST00000308159.5:c.2069A>G	p.Tyr690Cys	p.Y690C	ENST00000308159	NM_014669.4	690	tAt/tGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094361	27094361	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			507	89	345	0	ENST00000324856.7:c.3069G>A	p.Trp1023Ter	p.W1023*	ENST00000324856	NM_006015.4	1023	tgG/tgA																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843748	156843748	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs537263008		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			769	62	536	0	ENST00000524377.1:c.1174C>T	p.Pro392Ser	p.P392S	ENST00000524377	NM_002529.3	392	Cct/Tct																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944139	71944139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			464	99	375	1	ENST00000298229.2:c.1972C>T	p.Pro658Ser	p.P658S	ENST00000298229	NM_001567.3	658	Cca/Tca																																																																															
PGR	5241	MSKCC	GRCh37	11	100933421	100933421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			287	63	282	0	ENST00000325455.5:c.1969C>T	p.Pro657Ser	p.P657S	ENST00000325455	NM_001202474.3	657	Cca/Tca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433781	49433781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			693	118	425	0	ENST00000301067.7:c.7772G>A	p.Gly2591Asp	p.G2591D	ENST00000301067	NM_003482.3	2591	gGc/gAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001970	29001970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	42	292	0	ENST00000282397.4:c.1195G>A	p.Asp399Asn	p.D399N	ENST00000282397	NM_002019.4	399	Gat/Aat																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041262	29041262	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			594	64	321	0	ENST00000282397.4:c.166del	p.Glu56LysfsTer12	p.E56Kfs*12	ENST00000282397	NM_002019.4	56	Gaa/aa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32915319	32915319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			403	58	299	0	ENST00000380152.3:c.6827C>T	p.Pro2276Leu	p.P2276L	ENST00000380152		2276	cCc/cTc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434634	99434634	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775630539		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			489	90	429	0	ENST00000268035.6:c.721G>A	p.Ala241Thr	p.A241T	ENST00000268035	NM_000875.3	241	Gcg/Acg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396473	396473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			471	82	423	0	ENST00000262320.3:c.553G>A	p.Ala185Thr	p.A185T	ENST00000262320	NM_003502.3	185	Gcc/Acc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820710	3820710	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756935046		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			634	155	445	1	ENST00000262367.5:c.2741G>A	p.Ser914Asn	p.S914N	ENST00000262367	NM_004380.2	914	aGc/aAc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50826578	50826578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			189	56	187	0	ENST00000398568.2:c.2303C>T	p.Pro768Leu	p.P768L	ENST00000398568	NM_001042412.1	768	cCt/cTt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			541	116	369	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15942876	15942876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			613	90	316	0	ENST00000268712.3:c.6826G>A	p.Asp2276Asn	p.D2276N	ENST00000268712	NM_006311.3	2276	Gat/Aat																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627841	37627841	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1462649581		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			717	94	376	0	ENST00000447079.4:c.1756C>T	p.Pro586Ser	p.P586S	ENST00000447079	NM_015083.1	586	Cct/Tct																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740536	58740536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			512	96	361	0	ENST00000305921.3:c.1441G>A	p.Ala481Thr	p.A481T	ENST00000305921	NM_003620.3	481	Gcc/Acc																																																																															
CD79B	974	MSKCC	GRCh37	17	62007607	62007607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			704	76	444	0	ENST00000392795.3:c.260C>T	p.Pro87Leu	p.P87L	ENST00000392795	NM_001039933.1	87	cCc/cTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272347	15272347	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779314594		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			670	88	482	0	ENST00000263388.2:c.6092G>A	p.Arg2031His	p.R2031H	ENST00000263388	NM_000435.2	2031	cGc/cAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302310	15302310	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1374454805		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			596	98	381	0	ENST00000263388.2:c.961G>A	p.Ala321Thr	p.A321T	ENST00000263388	NM_000435.2	321	Gcc/Acc																																																																															
AXL	558	MSKCC	GRCh37	19	41745120	41745120	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1177926109		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			687	94	349	0	ENST00000301178.4:c.1186G>A	p.Asp396Asn	p.D396N	ENST00000301178	NM_021913.4	396	Gac/Aac																																																																															
ALK	238	MSKCC	GRCh37	2	29430109	29430109	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1173246434		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	31	278	0	ENST00000389048.3:c.3866C>T	p.Ala1289Val	p.A1289V	ENST00000389048	NM_004304.4	1289	gCc/gTc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660483	227660483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745750129		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			548	32	455	0	ENST00000305123.5:c.2972C>T	p.Thr991Ile	p.T991I	ENST00000305123	NM_005544.2	991	aCc/aTc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546949	9546949	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs921511471		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			666	111	379	0	ENST00000353224.5:c.1073C>T	p.Pro358Leu	p.P358L	ENST00000353224	NM_177990.2	358	cCt/cTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165300	47165300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			374	77	327	0	ENST00000409792.3:c.826G>A	p.Asp276Asn	p.D276N	ENST00000409792	NM_014159.6	276	Gat/Aat																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114283	73114285	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			416	33	288	0	ENST00000356692.5:c.926_928del	p.Glu310del	p.E310del	ENST00000356692		307	GAA/-																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182681805	182681805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			313	65	247	0	ENST00000292782.4:c.253G>A	p.Gly85Ser	p.G85S	ENST00000292782	NM_020640.2	85	Ggc/Agc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524450	187524450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			540	42	338	1	ENST00000441802.2:c.11230C>T	p.Pro3744Ser	p.P3744S	ENST00000441802	NM_005245.3	3744	Ccc/Tcc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630804	187630804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			558	87	402	0	ENST00000441802.2:c.178G>A	p.Gly60Ser	p.G60S	ENST00000441802	NM_005245.3	60	Ggt/Agt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56167761	56167761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			538	74	300	0	ENST00000399503.3:c.1326G>A	p.Met442Ile	p.M442I	ENST00000399503	NM_005921.1	442	atG/atA																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149457745	149457745	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752816265		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			742	42	393	0	ENST00000286301.3:c.659C>T	p.Ala220Val	p.A220V	ENST00000286301	NM_005211.3	220	gCc/gTc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93964450	93964450	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145700620		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			221	45	329	0	ENST00000369303.4:c.2447C>T	p.Ala816Val	p.A816V	ENST00000369303	NM_004440.3	816	gCc/gTc																																																																															
HGF	3082	MSKCC	GRCh37	7	81346571	81346571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			597	78	298	0	ENST00000222390.5:c.1382G>A	p.Trp461Ter	p.W461*	ENST00000222390	NM_000601.4	461	tGg/tAg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38273575	38273575	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1243758431		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			731	42	351	0	ENST00000425967.3:c.1760C>T	p.Pro587Leu	p.P587L	ENST00000425967	NM_001174067.1	587	cCc/cTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507344	8507344	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs573381420		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	29	363	0	ENST00000356435.5:c.1634C>T	p.Ala545Val	p.A545V	ENST00000356435		545	gCc/gTc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849000	156849000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	236	415	0	ENST00000524377.1:c.1892C>T	p.Ala631Val	p.A631V	ENST00000524377	NM_002529.3	631	gCt/gTt																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230472992	230472992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			421	97	322	0	ENST00000525115.1:c.730G>A	p.Asp244Asn	p.D244N	ENST00000525115		244	Gat/Aat																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594885	47594885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			581	131	433	0	ENST00000395288.2:c.1154G>A	p.Gly385Glu	p.G385E	ENST00000395288	NM_016506.5	385	gGg/gAg																																																																															
APLNR	187	MSKCC	GRCh37	11	57003550	57003550	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			550	95	456	0	ENST00000257254.3:c.929C>T	p.Ala310Val	p.A310V	ENST00000257254		310	gCc/gTc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577257	64577257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	266	395	0	ENST00000337652.1:c.325G>T	p.Glu109Ter	p.E109*	ENST00000337652	NM_130803.2	109	Gaa/Taa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94225952	94225952	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501784		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			302	76	265	0	ENST00000323929.3:c.16G>A	p.Ala6Thr	p.A6T	ENST00000323929	NM_005591.3	6	Gca/Aca																																																																															
ATM	472	MSKCC	GRCh37	11	108196104	108196104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1433554922		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			242	51	265	0	ENST00000278616.4:c.6640G>A	p.Asp2214Asn	p.D2214N	ENST00000278616	NM_000051.3	2214	Gac/Aac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307367	118307367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			247	60	214	0	ENST00000534358.1:c.140G>A	p.Gly47Asp	p.G47D	ENST00000534358	NM_005933.3	47	gGc/gAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373146	118373146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	72	314	0	ENST00000534358.1:c.6539C>T	p.Thr2180Ile	p.T2180I	ENST00000534358	NM_005933.3	2180	aCa/aTa																																																																															
CBL	867	MSKCC	GRCh37	11	119167641	119167641	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778154		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	68	296	0	ENST00000264033.4:c.2050C>T	p.Pro684Ser	p.P684S	ENST00000264033	NM_005188.3	684	Cca/Tca																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427606	427606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			519	66	298	0	ENST00000399788.2:c.2563G>A	p.Glu855Lys	p.E855K	ENST00000399788	NM_001042603.1	855	Gag/Aag																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871206	12871206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			776	115	321	0	ENST00000228872.4:c.433G>A	p.Ala145Thr	p.A145T	ENST00000228872	NM_004064.3	145	Gcg/Acg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18499676	18499676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	77	398	0	ENST00000266497.5:c.1531C>T	p.Pro511Ser	p.P511S	ENST00000266497		511	Cct/Tct																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641425	18641425	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1375260257		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	60	307	0	ENST00000266497.5:c.2424G>A	p.Trp808Ter	p.W808*	ENST00000266497		808	tgG/tgA																																																																															
RECQL	5965	MSKCC	GRCh37	12	21626574	21626574	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			330	52	254	0	ENST00000421138.2:c.1358G>A	p.Cys453Tyr	p.C453Y	ENST00000421138		453	tGt/tAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434756	49434756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			945	55	462	0	ENST00000301067.7:c.6797G>A	p.Gly2266Asp	p.G2266D	ENST00000301067	NM_003482.3	2266	gGc/gAc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26978124	26978124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			511	71	312	0	ENST00000381527.3:c.1301C>T	p.Pro434Leu	p.P434L	ENST00000381527	NM_001260.1	434	cCt/cTt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912760	32912760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			377	59	303	0	ENST00000380152.3:c.4268C>T	p.Thr1423Ile	p.T1423I	ENST00000380152		1423	aCt/aTt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30133041	30133041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	51	252	0	ENST00000331968.5:c.560G>A	p.Arg187Lys	p.R187K	ENST00000331968	NM_002742.2	187	aGa/aAa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748576	43748576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			333	105	376	0	ENST00000382044.4:c.2230G>A	p.Glu744Lys	p.E744K	ENST00000382044	NM_001141980.1	744	Gaa/Aaa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678358	88678358	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1257351492		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	25	373	0	ENST00000360948.2:c.1178G>A	p.Gly393Asp	p.G393D	ENST00000360948	NM_001012338.2	393	gGc/gAc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50785629	50785629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			402	86	296	0	ENST00000398568.2:c.619G>A	p.Asp207Asn	p.D207N	ENST00000398568	NM_001042412.1	207	Gat/Aat																																																																															
CYLD	1540	MSKCC	GRCh37	16	50785665	50785665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			402	64	295	0	ENST00000398568.2:c.655C>T	p.Pro219Ser	p.P219S	ENST00000398568	NM_001042412.1	219	Cct/Tct																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821892	72821892	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375049833		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			456	111	391	0	ENST00000268489.5:c.10283C>T	p.Pro3428Leu	p.P3428L	ENST00000268489	NM_006885.3	3428	cCc/cTc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347962	89347962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			436	121	405	0	ENST00000301030.4:c.4988C>T	p.Ala1663Val	p.A1663V	ENST00000301030	NM_001256183.1	1663	gCc/gTc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16042463	16042463	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			291	39	250	0	ENST00000268712.3:c.1211C>T	p.Pro404Leu	p.P404L	ENST00000268712	NM_006311.3	404	cCa/cTa																																																																															
EZH1	2145	MSKCC	GRCh37	17	40876345	40876345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			561	101	354	0	ENST00000428826.2:c.344C>T	p.Ser115Phe	p.S115F	ENST00000428826		115	tCc/tTc																																																																															
MSI2	124540	MSKCC	GRCh37	17	55704595	55704595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			491	84	262	0	ENST00000284073.2:c.658C>T	p.Pro220Ser	p.P220S	ENST00000284073	NM_138962.2	220	Ccc/Tcc																																																																															
CD79B	974	MSKCC	GRCh37	17	62007435	62007435	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs747265164		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			683	125	388	0	ENST00000392795.3:c.432G>A	p.Met144Ile	p.M144I	ENST00000392795	NM_001039933.1	144	atG/atA																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2220126	2220126	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			622	116	348	0	ENST00000398665.3:c.2711T>C	p.Val904Ala	p.V904A	ENST00000398665	NM_032482.2	904	gTg/gCg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5218523	5218523	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762505033		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			567	73	368	0	ENST00000357368.4:c.3956C>T	p.Pro1319Leu	p.P1319L	ENST00000357368	NM_002850.3	1319	cCc/cTc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10257097	10257097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			600	78	343	0	ENST00000340748.4:c.2776G>A	p.Ala926Thr	p.A926T	ENST00000340748		926	Gcc/Acc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281148	15281148	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1257083112		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			726	80	407	0	ENST00000263388.2:c.5108G>A	p.Gly1703Asp	p.G1703D	ENST00000263388	NM_000435.2	1703	gGc/gAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290306	15290306	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			678	114	397	0	ENST00000263388.2:c.3329G>A	p.Cys1110Tyr	p.C1110Y	ENST00000263388	NM_000435.2	1110	tGt/tAt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376184	15376184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			548	94	266	1	ENST00000263377.2:c.830C>T	p.Ala277Val	p.A277V	ENST00000263377	NM_058243.2	277	gCc/gTc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18272109	18272109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1006	55	521	0	ENST00000222254.8:c.619C>T	p.Pro207Ser	p.P207S	ENST00000222254	NM_005027.3	207	Ccg/Tcg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30314662	30314662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			673	97	357	0	ENST00000262643.3:c.1211G>A	p.Ser404Asn	p.S404N	ENST00000262643	NM_001238.2	404	aGc/aAc																																																																															
AKT2	208	MSKCC	GRCh37	19	40742274	40742274	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1473345359		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			551	71	317	0	ENST00000392038.2:c.850G>A	p.Asp284Asn	p.D284N	ENST00000392038	NM_001626.4	284	Gac/Aac																																																																															
AKT2	208	MSKCC	GRCh37	19	40762884	40762884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			693	89	348	0	ENST00000392038.2:c.124C>T	p.Pro42Ser	p.P42S	ENST00000392038	NM_001626.4	42	Ccc/Tcc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383613	42383613	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782159652		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			659	101	359	0	ENST00000221972.3:c.388C>T	p.Pro130Ser	p.P130S	ENST00000221972	NM_021601.3	130	Ccc/Tcc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753524	42753524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			913	122	514	0	ENST00000222329.4:c.740C>T	p.Pro247Leu	p.P247L	ENST00000222329	NM_006494.2	247	cCc/cTc																																																																															
CIC	23152	MSKCC	GRCh37	19	42792026	42792026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			751	84	407	0	ENST00000575354.2:c.830C>T	p.Ser277Phe	p.S277F	ENST00000575354	NM_015125.3	277	tCc/tTc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47425012	47425012	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1221753325		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			662	83	344	0	ENST00000404338.3:c.3080G>A	p.Ser1027Asn	p.S1027N	ENST00000404338	NM_004491.4	1027	aGc/aAc																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731454	47731454	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			763	80	414	0	ENST00000449228.1:c.338G>A	p.Trp113Ter	p.W113*	ENST00000449228	NM_001127240.2	113	tGg/tAg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630346	47630346	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			472	266	440	0	ENST00000233146.2:c.17del	p.Lys6ArgfsTer58	p.K6Rfs*58	ENST00000233146	NM_000251.2	6	Aag/ag																																																																															
MSH2	4436	MSKCC	GRCh37	2	47635561	47635561	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs892915951		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	61	247	0	ENST00000233146.2:c.233T>C	p.Val78Ala	p.V78A	ENST00000233146	NM_000251.2	78	gTt/gCt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426747	212426747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			366	98	362	0	ENST00000342788.4:c.2368C>T	p.Pro790Ser	p.P790S	ENST00000342788	NM_005235.2	790	Cca/Tca																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371651	225371651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			222	60	298	0	ENST00000264414.4:c.953G>A	p.Ser318Asn	p.S318N	ENST00000264414	NM_003590.4	318	aGt/aAt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936056	49936056	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			535	95	425	0	ENST00000296474.3:c.1614G>T	p.Arg538Ser	p.R538S	ENST00000296474	NM_002447.2	538	agG/agT																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52584545	52584545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			588	50	372	0	ENST00000394830.3:c.4468C>T	p.Pro1490Ser	p.P1490S	ENST00000394830	NM_018313.4	1490	Ccc/Tcc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63973940	63973940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			490	110	321	0	ENST00000295900.6:c.1301C>T	p.Pro434Leu	p.P434L	ENST00000295900	NM_000333.3	434	cCt/cTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928035	178928035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	54	259	0	ENST00000263967.3:c.1313C>T	p.Ser438Phe	p.S438F	ENST00000263967	NM_006218.2	438	tCt/tTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187535416	187535416	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756123882		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			403	67	315	0	ENST00000441802.2:c.9158G>A	p.Arg3053His	p.R3053H	ENST00000441802	NM_005245.3	3053	cGc/cAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628394	187628394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			669	91	382	0	ENST00000441802.2:c.2588C>T	p.Thr863Ile	p.T863I	ENST00000441802	NM_005245.3	863	aCa/aTa																																																																															
SDHA	6389	MSKCC	GRCh37	5	233607	233607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			242	44	135	0	ENST00000264932.6:c.911G>A	p.Gly304Asp	p.G304D	ENST00000264932	NM_004168.2	304	gGt/gAt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39021188	39021188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			353	47	233	0	ENST00000357387.3:c.148G>A	p.Gly50Arg	p.G50R	ENST00000357387	NM_152756.3	50	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112175879	112175879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			547	99	375	0	ENST00000257430.4:c.4588G>A	p.Glu1530Lys	p.E1530K	ENST00000257430	NM_000038.5	1530	Gaa/Aaa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131893137	131893137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			549	96	347	0	ENST00000265335.6:c.121G>A	p.Gly41Arg	p.G41R	ENST00000265335		41	Gga/Aga																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513467	149513467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			756	122	448	0	ENST00000261799.4:c.736G>A	p.Glu246Lys	p.E246K	ENST00000261799	NM_002609.3	246	Gag/Aag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047645	180047645	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			553	80	395	0	ENST00000261937.6:c.2370G>A	p.Trp790Ter	p.W790*	ENST00000261937	NM_182925.4	790	tgG/tgA																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048832	180048832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			656	85	413	0	ENST00000261937.6:c.1730G>A	p.Ser577Asn	p.S577N	ENST00000261937	NM_182925.4	577	aGc/aAc																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225765	26225765	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749997198		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			711	52	491	0	ENST00000360408.1:c.383C>T	p.Ala128Val	p.A128V	ENST00000360408	NM_003532.2	128	gCc/gTc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672618	30672618	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751090753		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			810	49	543	0	ENST00000376406.3:c.4342G>A	p.Val1448Ile	p.V1448I	ENST00000376406	NM_014641.2	1448	Gtt/Att																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32171605	32171605	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs968431928		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			441	85	341	0	ENST00000375023.3:c.3173G>A	p.Gly1058Glu	p.G1058E	ENST00000375023	NM_004557.3	1058	gGa/gAa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163889	152163889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	79	308	0	ENST00000206249.3:c.610G>A	p.Gly204Ser	p.G204S	ENST00000206249	NM_000125.3	204	Ggc/Agc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2979433	2979433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			585	89	303	0	ENST00000396946.4:c.814G>A	p.Glu272Lys	p.E272K	ENST00000396946	NM_032415.4	272	Gag/Aag																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026730	6026730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			260	42	176	0	ENST00000265849.7:c.1666G>A	p.Glu556Lys	p.E556K	ENST00000265849	NM_000535.5	556	Gaa/Aaa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468087	50468087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			606	94	427	0	ENST00000331340.3:c.1322C>T	p.Ala441Val	p.A441V	ENST00000331340	NM_006060.4	441	gCc/gTc																																																																															
MET	4233	MSKCC	GRCh37	7	116412010	116412010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			591	124	363	0	ENST00000397752.3:c.2995G>A	p.Glu999Lys	p.E999K	ENST00000397752	NM_000245.2	999	Gaa/Aaa																																																																															
BRAF	673	MSKCC	GRCh37	7	140624386	140624386	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1161707003		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			562	69	301	0	ENST00000288602.6:c.118G>A	p.Asp40Asn	p.D40N	ENST00000288602	NM_004333.4	40	Gac/Aac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151875069	151875069	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1021421694		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	23	213	0	ENST00000262189.6:c.7469G>A	p.Gly2490Asp	p.G2490D	ENST00000262189	NM_170606.2	2490	gGt/gAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151880109	151880109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	67	257	0	ENST00000262189.6:c.5215C>T	p.Pro1739Ser	p.P1739S	ENST00000262189	NM_170606.2	1739	Cct/Tct																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38178622	38178622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	58	232	0	ENST00000317025.8:c.1777G>A	p.Val593Ile	p.V593I	ENST00000317025	NM_023034.1	593	Gtt/Att																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187038	38187038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			643	36	321	1	ENST00000317025.8:c.1439C>T	p.Pro480Leu	p.P480L	ENST00000317025	NM_023034.1	480	cCa/cTa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020545	69020545	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1162684255		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			384	55	271	0	ENST00000288368.4:c.2917G>A	p.Glu973Lys	p.E973K	ENST00000288368	NM_024870.2	973	Gaa/Aaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021777	69021777	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146544818		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			459	76	346	0	ENST00000288368.4:c.3065C>T	p.Thr1022Ile	p.T1022I	ENST00000288368	NM_024870.2	1022	aCc/aTc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981896	70981896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			665	112	450	0	ENST00000276594.2:c.200C>T	p.Pro67Leu	p.P67L	ENST00000276594	NM_024504.3	67	cCc/cTc																																																																															
NBN	4683	MSKCC	GRCh37	8	90994975	90994975	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1450189149		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	48	220	0	ENST00000265433.3:c.146C>T	p.Thr49Ile	p.T49I	ENST00000265433	NM_002485.4	49	aCt/aTt																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2181609	2181609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			318	28	234	0	ENST00000349721.2:c.4292C>T	p.Pro1431Leu	p.P1431L	ENST00000349721	NM_003070.3	1431	cCt/cTt																																																																															
TEK	7010	MSKCC	GRCh37	9	27158140	27158140	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			556	75	347	0	ENST00000380036.4:c.364G>A	p.Ala122Thr	p.A122T	ENST00000380036	NM_000459.3	122	Gct/Act																																																																															
TEK	7010	MSKCC	GRCh37	9	27220097	27220097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			506	99	308	0	ENST00000380036.4:c.3154C>T	p.Pro1052Ser	p.P1052S	ENST00000380036	NM_000459.3	1052	Ccc/Tcc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135787785	135787785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	79	283	0	ENST00000298552.3:c.797C>T	p.Pro266Leu	p.P266L	ENST00000298552	NM_001162426.1	266	cCc/cTc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135802643	135802643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			605	85	312	0	ENST00000298552.3:c.155C>T	p.Thr52Ile	p.T52I	ENST00000298552	NM_001162426.1	52	aCc/aTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139407969	139407969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			649	87	324	0	ENST00000277541.6:c.2228C>T	p.Pro743Leu	p.P743L	ENST00000277541	NM_017617.3	743	cCt/cTt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921454	39921454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			302	102	147	0	ENST00000378444.4:c.4366C>T	p.Leu1456Phe	p.L1456F	ENST00000378444	NM_001123385.1	1456	Ctt/Ttt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006898	47006898	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			352	34	154	0	ENST00000329236.7:c.17+1G>A		p.X6_splice	ENST00000329236	NM_001204466.1	6																																																																																
AMER1	139285	MSKCC	GRCh37	X	63413121	63413121	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1279998398		P-0043903-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			233	72	177	0	ENST00000330258.3:c.46G>A	p.Ala16Thr	p.A16T	ENST00000330258	NM_152424.3	16	Gcc/Acc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221264	1221267	+	frameshift_variant	Frame_Shift_Del	DEL	TTGT	TTGT	-	rs121913320		P-0050985-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			128	94	402	0	ENST00000326873.7:c.790_793del	p.Phe264ArgfsTer22	p.F264Rfs*22	ENST00000326873	NM_000455.4	263	TTGTtt/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050985-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			270	167	267	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41209069	41209072	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0050985-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			196	85	402	0	ENST00000357654.3:c.5274_5277del	p.Lys1759SerfsTer5	p.K1759Sfs*5	ENST00000357654	NM_007294.3	1758	agAAAG/ag																																																																															
CCND1	595	MSKCC	GRCh37	11	69456265	69456265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050985-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			450	87	409	0	ENST00000227507.2:c.184A>T	p.Thr62Ser	p.T62S	ENST00000227507	NM_053056.2	62	Acc/Tcc																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67626745	67626745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050985-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			360	82	316	0	ENST00000272342.5:c.416G>A	p.Arg139His	p.R139H	ENST00000272342	NM_019002.3	139	cGt/cAt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484167	8484170	+	frameshift_variant	Frame_Shift_Del	DEL	CCAT	CCAT	-			P-0050985-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			166	30	399	0	ENST00000356435.5:c.3362_3365del	p.Asp1121AlafsTer2	p.D1121Afs*2	ENST00000356435		1121	gATGGc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0052005-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			117	207	374	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1219388	1219389	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0052005-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			131	145	311	0	ENST00000326873.7:c.443dup	p.Val150SerfsTer13	p.V150Sfs*13	ENST00000326873	NM_000455.4	147	cgt/cgTt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61724121	61724121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052005-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			284	53	242	0	ENST00000401558.2:c.781C>G	p.Arg261Gly	p.R261G	ENST00000401558	NM_003400.3	261	Cga/Gga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111719	56111719	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052005-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			240	13	264	0	ENST00000399503.3:c.319C>G	p.Pro107Ala	p.P107A	ENST00000399503	NM_005921.1	107	Cct/Gct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			526	104	377	0	ENST00000324856.7:c.5547_5548dup	p.Asp1850GlyfsTer34	p.D1850Gfs*34	ENST00000324856	NM_006015.4	1847	-/GG																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			485	145	320	7	ENST00000342505.4:c.2580dup	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			389	96	248	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441815	49441816	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs756471180		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			429	98	275	0	ENST00000301067.7:c.4168dup	p.Ala1390GlyfsTer42	p.A1390Gfs*42	ENST00000301067	NM_003482.3	1390	gca/gGca																																																																															
POLE	5426	MSKCC	GRCh37	12	133233793	133233794	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1060500858		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			607	144	319	0	ENST00000320574.5:c.3510dup	p.Leu1171ThrfsTer6	p.L1171Tfs*6	ENST00000320574	NM_006231.2	1170	-/A																																																																															
AKT1	207	MSKCC	GRCh37	14	105241994	105241994	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375990114		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			396	86	221	0	ENST00000349310.3:c.430C>T	p.Arg144Cys	p.R144C	ENST00000349310	NM_001014432.1	144	Cgc/Tgc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858417	9858417	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777687136		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			513	121	371	0	ENST00000330684.3:c.2984C>T	p.Thr995Met	p.T995M	ENST00000330684	NM_001134407.1	995	aCg/aTg																																																																															
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			584	148	298	0	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762108866		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			578	126	377	0	ENST00000268489.5:c.10215dup	p.Gly3406ArgfsTer25	p.G3406Rfs*25	ENST00000268489	NM_006885.3	3405	-/C																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349640	89349641	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs772267579		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			544	136	334	2	ENST00000301030.4:c.3309dup	p.Asp1104ArgfsTer2	p.D1104Rfs*2	ENST00000301030	NM_001256183.1	1103	-/A																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			532	98	297	1	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453398	40453399	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs773909918		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			497	80	304	0	ENST00000345506.4:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000345506	NM_003152.3	365	-/C																																																																															
STAT3	6774	MSKCC	GRCh37	17	40468878	40468879	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			430	98	237	1	ENST00000264657.5:c.2185dup	p.Arg729ProfsTer12	p.R729Pfs*12	ENST00000264657	NM_139276.2	729	cgc/cCgc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119780	70119781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			350	67	318	0	ENST00000245479.2:c.788dup	p.Arg264GlnfsTer32	p.R264Qfs*32	ENST00000245479	NM_000346.3	261	gag/gaGg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56348560	56348561	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1450997592		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			417	98	248	0	ENST00000348428.3:c.374dup	p.Gly126ArgfsTer40	p.G126Rfs*40	ENST00000348428	NM_006785.3	123	agc/agCc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097624	11097625	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1165714406		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			443	127	295	0	ENST00000344626.4:c.810dup	p.Gly271ArgfsTer16	p.G271Rfs*16	ENST00000344626	NM_003072.3	268	-/C																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272336	15272337	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs771517374		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			490	117	360	3	ENST00000263388.2:c.6102dup	p.Gly2035ArgfsTer60	p.G2035Rfs*60	ENST00000263388	NM_000435.2	2034	-/C																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272513	15272513	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			468	106	339	0	ENST00000263388.2:c.5926del	p.Leu1976TyrfsTer36	p.L1976Yfs*36	ENST00000263388	NM_000435.2	1976	Cta/ta																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906816	50906816	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1426325954		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			415	99	296	0	ENST00000440232.2:c.1204G>A	p.Asp402Asn	p.D402N	ENST00000440232	NM_002691.3	402	Gac/Aac																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523008	25523009	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G	rs769876640		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			503	46	277	0	ENST00000264709.3:c.176dup	p.Val60GlyfsTer5	p.V60Gfs*5	ENST00000264709	NM_175629.2	59	ccg/ccCg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728671	190728672	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			488	100	289	0	ENST00000441310.2:c.2065dup	p.Arg689LysfsTer7	p.R689Kfs*7	ENST00000441310	NM_000534.4	687	gaa/gAaa																																																																															
CASP8	841	MSKCC	GRCh37	2	202149769	202149769	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			526	144	359	0	ENST00000358485.4:c.1210T>C	p.Cys404Arg	p.C404R	ENST00000358485	NM_001080125.1	404	Tgc/Cgc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212589875	212589875	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758827443		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			489	134	267	0	ENST00000342788.4:c.667G>A	p.Gly223Arg	p.G223R	ENST00000342788	NM_005235.2	223	Gga/Aga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403253	213403254	+	frameshift_variant,start_lost,start_retained_variant	Frame_Shift_Ins	INS	-	-	T			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			370	102	323	0	ENST00000342788.4:c.1dup	p.Met1?	p.M1?	ENST00000342788	NM_005235.2	1	atg/aAtg																																																																															
MYD88	4615	MSKCC	GRCh37	3	38180226	38180226	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1157980099		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			484	121	417	2	ENST00000396334.3:c.74C>T	p.Ala25Val	p.A25V	ENST00000396334	NM_002468.4	25	gCc/gTc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			468	107	261	0	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884864	134884864	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1257672576		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			405	109	265	0	ENST00000398015.3:c.1640C>T	p.Ala547Val	p.A547V	ENST00000398015	NM_004441.4	547	gCg/gTg																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374838	149374838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			347	95	276	0	ENST00000360632.3:c.256C>T	p.Arg86Cys	p.R86C	ENST00000360632	NM_015472.4	86	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			396	106	308	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521298	187521299	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			504	109	339	0	ENST00000441802.2:c.11856dup	p.Gly3953TrpfsTer19	p.G3953Wfs*19	ENST00000441802	NM_005245.3	3952	-/T																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31493321	31493322	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1330233722		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			411	94	253	0	ENST00000344624.3:c.1834dup	p.Leu612ProfsTer8	p.L612Pfs*8	ENST00000344624		612	ctg/cCtg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			444	254	290	1	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
E2F3	1871	MSKCC	GRCh37	6	20481454	20481455	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			515	110	304	0	ENST00000346618.3:c.529dup	p.Thr177AsnfsTer4	p.T177Nfs*4	ENST00000346618	NM_001949.4	175	gaa/gAaa																																																																															
HGF	3082	MSKCC	GRCh37	7	81388044	81388045	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1186073562		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			252	49	145	0	ENST00000222390.5:c.330dup	p.Glu111ArgfsTer5	p.E111Rfs*5	ENST00000222390	NM_000601.4	110	-/A																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874147	151874148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs771193709		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			458	174	305	3	ENST00000262189.6:c.8390dup	p.Glu2798GlyfsTer11	p.E2798Gfs*11	ENST00000262189	NM_170606.2	2797	aag/aaAg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981891	70981892	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			520	58	400	0	ENST00000276594.2:c.204dup	p.Phe69LeufsTer59	p.F69Lfs*59	ENST00000276594	NM_024504.3	68	-/C																																																																															
TEK	7010	MSKCC	GRCh37	9	27204953	27204953	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45510599		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			453	89	265	0	ENST00000380036.4:c.2254C>T	p.Leu752Phe	p.L752F	ENST00000380036	NM_000459.3	752	Ctt/Ttt																																																																															
XIAP	331	MSKCC	GRCh37	X	123034426	123034427	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			317	63	203	0	ENST00000355640.3:c.1189dup	p.Ile397AsnfsTer9	p.I397Nfs*9	ENST00000355640		395	gaa/gAaa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777594	9777594	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			524	33	279	0	ENST00000377346.4:c.931-1G>A		p.X311_splice	ENST00000377346	NM_005026.3	311																																																																																
MPL	4352	MSKCC	GRCh37	1	43804223	43804223	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756918176		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			494	141	306	0	ENST00000372470.3:c.223C>T	p.Arg75Cys	p.R75C	ENST00000372470	NM_005373.2	75	Cgt/Tgt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115268880	115268880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			364	116	193	0	ENST00000438362.2:c.1730G>A	p.Gly577Glu	p.G577E	ENST00000438362	NM_001242891.1	577	gGa/gAa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120497801	120497801	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782254452		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			536	154	319	0	ENST00000256646.2:c.2081G>A	p.Gly694Asp	p.G694D	ENST00000256646	NM_024408.3	694	gGt/gAt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243858995	243858995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			348	22	224	0	ENST00000263826.5:c.70C>T	p.Pro24Ser	p.P24S	ENST00000263826	NM_005465.4	24	Cca/Tca																																																																															
TET1	80312	MSKCC	GRCh37	10	70333933	70333933	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			605	82	366	0	ENST00000373644.4:c.1838A>C	p.Lys613Thr	p.K613T	ENST00000373644	NM_030625.2	613	aAg/aCg																																																																															
ATM	472	MSKCC	GRCh37	11	108199803	108199804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1487432916		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			441	101	238	0	ENST00000278616.4:c.7150dup	p.Met2384AsnfsTer19	p.M2384Nfs*19	ENST00000278616	NM_000051.3	2382	gga/ggAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376172	118376173	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			514	154	392	0	ENST00000534358.1:c.9567dup	p.Gly3190TrpfsTer46	p.G3190Wfs*46	ENST00000534358	NM_005933.3	3189	att/aTtt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118377295	118377295	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs782026239		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			577	163	359	0	ENST00000534358.1:c.10688T>C	p.Leu3563Ser	p.L3563S	ENST00000534358	NM_005933.3	3563	tTg/tCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416379	49416379	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			405	118	295	0	ENST00000301067.7:c.16332A>C	p.Glu5444Asp	p.E5444D	ENST00000301067	NM_003482.3	5444	gaA/gaC																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865442	57865442	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			599	68	346	0	ENST00000228682.2:c.2919T>A	p.Asn973Lys	p.N973K	ENST00000228682	NM_005269.2	973	aaT/aaA																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120626	115120626	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			600	73	356	0	ENST00000257566.3:c.380A>G	p.Lys127Arg	p.K127R	ENST00000257566	NM_016569.3	127	aAg/aGg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589388	28589388	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			376	104	213	0	ENST00000241453.7:c.2659A>G	p.Asn887Asp	p.N887D	ENST00000241453	NM_004119.2	887	Aat/Gat																																																																															
DICER1	23405	MSKCC	GRCh37	14	95590675	95590675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			428	108	273	0	ENST00000343455.3:c.1234T>C	p.Trp412Arg	p.W412R	ENST00000343455	NM_177438.2	412	Tgg/Cgg																																																																															
RAD51	5888	MSKCC	GRCh37	15	41021746	41021746	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			470	27	267	0	ENST00000267868.3:c.688A>G	p.Thr230Ala	p.T230A	ENST00000267868	NM_002875.4	230	Aca/Gca																																																																															
MGA	23269	MSKCC	GRCh37	15	42003158	42003158	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			491	136	357	0	ENST00000219905.7:c.2695A>C	p.Lys899Gln	p.K899Q	ENST00000219905	NM_001164273.1	899	Aag/Cag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640154	3640154	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			465	115	333	0	ENST00000294008.3:c.3485A>G	p.Glu1162Gly	p.E1162G	ENST00000294008	NM_032444.2	1162	gAg/gGg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14020577	14020577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			332	82	251	0	ENST00000311895.7:c.548G>A	p.Arg183Lys	p.R183K	ENST00000311895	NM_005236.2	183	aGa/aAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29556462	29556463	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			490	126	272	0	ENST00000358273.4:c.2835dup	p.Asp946Ter	p.D946*	ENST00000358273	NM_001042492.2	943	-/T																																																																															
NF1	4763	MSKCC	GRCh37	17	29652936	29652936	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			529	116	298	0	ENST00000358273.4:c.4934T>C	p.Leu1645Pro	p.L1645P	ENST00000358273	NM_001042492.2	1645	cTt/cCt																																																																															
NF1	4763	MSKCC	GRCh37	17	29664534	29664535	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			441	102	252	0	ENST00000358273.4:c.6585_6586dup	p.Thr2196ArgfsTer5	p.T2196Rfs*5	ENST00000358273	NM_001042492.2	2192	-/GA																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262435	10262435	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs774333932		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			448	117	324	0	ENST00000340748.4:c.2060A>G	p.Gln687Arg	p.Q687R	ENST00000340748		687	cAa/cGa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299830	15299830	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			533	123	294	0	ENST00000263388.2:c.1348A>G	p.Ile450Val	p.I450V	ENST00000263388	NM_000435.2	450	Ata/Gta																																																																															
BRD4	23476	MSKCC	GRCh37	19	15383729	15383729	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			549	151	344	0	ENST00000263377.2:c.182A>G	p.Asn61Ser	p.N61S	ENST00000263377	NM_058243.2	61	aAc/aGc																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379692	17379692	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758526214		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			414	120	289	0	ENST00000359435.4:c.77G>A	p.Arg26His	p.R26H	ENST00000359435	NM_001033549.1	26	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211794	36211795	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			586	89	324	0	ENST00000222270.7:c.1549dup	p.Ser517LysfsTer33	p.S517Kfs*33	ENST00000222270	NM_014727.1	515	-/A																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223806	36223806	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			512	31	410	0	ENST00000222270.7:c.6356A>G	p.Lys2119Arg	p.K2119R	ENST00000222270	NM_014727.1	2119	aAg/aGg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229016	36229016	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			515	121	350	0	ENST00000222270.7:c.7796A>G	p.Glu2599Gly	p.E2599G	ENST00000222270	NM_014727.1	2599	gAg/gGg																																																																															
EP300	2033	MSKCC	GRCh37	22	41521947	41521947	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs781277803		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			353	102	237	0	ENST00000263253.7:c.809T>C	p.Leu270Pro	p.L270P	ENST00000263253	NM_001429.3	270	cTt/cCt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266220	41266220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			472	133	279	0	ENST00000349496.5:c.217T>C	p.Ser73Pro	p.S73P	ENST00000349496	NM_001904.3	73	Tcc/Ccc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162970	47162970	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			474	91	249	0	ENST00000409792.3:c.3156A>C	p.Glu1052Asp	p.E1052D	ENST00000409792	NM_014159.6	1052	gaA/gaC																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880881	134880881	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			386	87	300	0	ENST00000398015.3:c.1444T>C	p.Ser482Pro	p.S482P	ENST00000398015	NM_004441.4	482	Tcc/Ccc																																																																															
ATR	545	MSKCC	GRCh37	3	142275233	142275233	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			358	94	244	0	ENST00000350721.4:c.2070G>T	p.Lys690Asn	p.K690N	ENST00000350721	NM_001184.3	690	aaG/aaT																																																																															
KDR	3791	MSKCC	GRCh37	4	55955933	55955933	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			404	88	259	0	ENST00000263923.4:c.3229A>T	p.Ile1077Phe	p.I1077F	ENST00000263923	NM_002253.2	1077	Att/Ttt																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84384737	84384737	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs777651096		P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			331	75	154	0	ENST00000321945.7:c.706A>G	p.Ser236Gly	p.S236G	ENST00000321945	NM_139076.2	236	Agt/Ggt																																																																															
GAB1	2549	MSKCC	GRCh37	4	144381536	144381537	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			492	103	239	0	ENST00000262994.4:c.1705dup	p.Arg569ProfsTer7	p.R569Pfs*7	ENST00000262994	NM_002039.3	567	tcc/tCcc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294015	1294015	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			469	122	349	0	ENST00000310581.5:c.986A>G	p.Lys329Arg	p.K329R	ENST00000310581	NM_198253.2	329	aAg/aGg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555261	106555261	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			494	84	302	0	ENST00000369096.4:c.2378A>G	p.Glu793Gly	p.E793G	ENST00000369096	NM_001198.3	793	gAg/gGg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662389	117662389	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			373	90	282	0	ENST00000368508.3:c.4988A>G	p.Tyr1663Cys	p.Y1663C	ENST00000368508	NM_002944.2	1663	tAt/tGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485226	8485226	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			275	76	194	0	ENST00000356435.5:c.3153+1G>A		p.X1051_splice	ENST00000356435		1051																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8504383	8504383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			389	106	207	0	ENST00000356435.5:c.1700G>A	p.Gly567Glu	p.G567E	ENST00000356435		567	gGg/gAg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570416	87570416	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			486	105	316	0	ENST00000277120.3:c.2156G>T	p.Ser719Ile	p.S719I	ENST00000277120		719	aGc/aTc																																																																															
FANCC	2176	MSKCC	GRCh37	9	97876939	97876939	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			387	112	217	0	ENST00000289081.3:c.1126A>G	p.Arg376Gly	p.R376G	ENST00000289081	NM_000136.2	376	Aga/Gga																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139565416	139565416	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			292	91	246	0	ENST00000308874.7:c.586A>T	p.Met196Leu	p.M196L	ENST00000308874		196	Atg/Ttg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949041	44949041	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			452	121	226	0	ENST00000377967.4:c.3602A>G	p.Tyr1201Cys	p.Y1201C	ENST00000377967	NM_021140.2	1201	tAt/tGt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030455	47030455	+	intron_variant	Intron	SNP	A	A	T			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			382	94	277	0	ENST00000329236.7:c.201+1558A>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
GATA1	2623	MSKCC	GRCh37	X	48650294	48650295	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			531	132	386	0	ENST00000376670.3:c.269dup	p.Ser91LeufsTer71	p.S91Lfs*71	ENST00000376670	NM_002049.3	88	-/G																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410829	63410830	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			465	100	317	0	ENST00000330258.3:c.2337dup	p.Gly780TrpfsTer12	p.G780Wfs*12	ENST00000330258	NM_152424.3	779	-/T																																																																															
AR	367	MSKCC	GRCh37	X	66765619	66765619	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			552	63	399	0	ENST00000374690.3:c.631G>T	p.Ala211Ser	p.A211S	ENST00000374690	NM_000044.3	211	Gcg/Tcg																																																																															
AR	367	MSKCC	GRCh37	X	66942685	66942686	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			388	78	268	0	ENST00000374690.3:c.2471dup	p.Asn824LysfsTer6	p.N824Kfs*6	ENST00000374690	NM_000044.3	822	-/A																																																																															
MED12	9968	MSKCC	GRCh37	X	70343538	70343538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054621-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			443	122	283	0	ENST00000374080.3:c.1712T>C	p.Leu571Pro	p.L571P	ENST00000374080		571	cTg/cCg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0055307-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			406	148	424	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578515	7578515	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0055307-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			397	216	446	0	ENST00000269305.4:c.415A>T	p.Lys139Ter	p.K139*	ENST00000269305	NM_001126112.2	139	Aag/Tag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701263	43701263	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1157211964		P-0055307-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			420	60	335	0	ENST00000382044.4:c.5432C>T	p.Ala1811Val	p.A1811V	ENST00000382044	NM_001141980.1	1811	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0055307-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			318	305	248	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398299	25398299	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055307-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			320	283	234	0	ENST00000256078.4:c.20T>C	p.Val7Ala	p.V7A	ENST00000256078	NM_033360.2	7	gTg/gCg																																																																															
CDH1	999	MSKCC	GRCh37	16	68842646	68842647	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0055307-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			491	74	401	1	ENST00000261769.5:c.582_583delinsAA	p.Gln195Lys	p.Q195K	ENST00000261769	NM_004360.3	194	ggCCaa/ggAAaa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50920346	50920346	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0055307-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			549	65	389	0	ENST00000440232.2:c.3112C>T	p.Gln1038Ter	p.Q1038*	ENST00000440232	NM_002691.3	1038	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151896440	151896440	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055307-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			258	20	326	0	ENST00000262189.6:c.4197G>C	p.Met1399Ile	p.M1399I	ENST00000262189	NM_170606.2	1399	atG/atC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0055799-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			269	68	330	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473723	67473723	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223740		P-0055799-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			235	30	368	0	ENST00000327367.4:c.803G>A	p.Arg268His	p.R268H	ENST00000327367	NM_005902.3	268	cGc/cAc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518070	176518070	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055799-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			315	180	449	0	ENST00000292408.4:c.568G>T	p.Ala190Ser	p.A190S	ENST00000292408	NM_213647.1	190	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0057268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	285	390	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0057268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	77	406	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0057268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	350	201	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259481	89259481	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	59	336	0	ENST00000336596.2:c.625C>A	p.Leu209Met	p.L209M	ENST00000336596	NM_005233.5	209	Ctg/Atg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120478185	120478185	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	64	334	0	ENST00000256646.2:c.3565G>C	p.Asp1189His	p.D1189H	ENST00000256646	NM_024408.3	1189	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0058937-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			110	230	452	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0058937-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			177	444	274	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839802	27839802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058937-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			330	127	526	0	ENST00000328488.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000328488	NM_003533.2	98	Gag/Aag																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154240	2154240	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058937-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			197	87	428	0	ENST00000434045.2:c.688G>C	p.Glu230Gln	p.E230Q	ENST00000434045	NM_001127598.1	230	Gag/Cag																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30321002	30321002	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058937-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			181	68	196	0	ENST00000322652.5:c.1412A>G	p.His471Arg	p.H471R	ENST00000322652	NM_015355.2	471	cAt/cGt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427554	427556	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0058937-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			475	72	366	0	ENST00000399788.2:c.2613_2615del	p.Ser872del	p.S872del	ENST00000399788	NM_001042603.1	871	tcTTCc/tcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519938		P-0060756-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	40	275	0	ENST00000263967.3:c.1034A>T	p.Asn345Ile	p.N345I	ENST00000263967	NM_006218.2	345	aAt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0060756-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			645	47	578	0	ENST00000269305.4:c.559+2T>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0062127-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			788	67	319	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475064	40475064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062127-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			727	95	250	0	ENST00000264657.5:c.1846G>A	p.Glu616Lys	p.E616K	ENST00000264657	NM_139276.2	616	Gaa/Aaa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376080	8376080	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062127-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			483	59	346	0	ENST00000356435.5:c.4517G>C	p.Ser1506Thr	p.S1506T	ENST00000356435		1506	aGt/aCt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729921	41729921	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062127-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			565	91	493	0	ENST00000242208.4:c.608A>G	p.Glu203Gly	p.E203G	ENST00000242208	NM_002192.2	203	gAa/gGa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8375958	8375958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062127-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			544	59	381	0	ENST00000356435.5:c.4639G>A	p.Gly1547Ser	p.G1547S	ENST00000356435		1547	Ggt/Agt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8375949	8375949	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062127-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			546	55	385	0	ENST00000356435.5:c.4648G>C	p.Val1550Leu	p.V1550L	ENST00000356435		1550	Gtt/Ctt																																																																															
EZH2	2146	MSKCC	GRCh37	7	148529737	148529737	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062127-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			405	53	262	0	ENST00000320356.2:c.352C>G	p.Gln118Glu	p.Q118E	ENST00000320356	NM_004456.4	118	Cag/Gag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0062493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	112	369	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576870	7576870	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062493-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	96	385	0	ENST00000269305.4:c.976del	p.Glu326AsnfsTer19	p.E326Nfs*19	ENST00000269305	NM_001126112.2	326	Gaa/aa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230692	46230692	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs916056847		P-0063240-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	275	358	0	ENST00000334344.6:c.941G>A	p.Arg314His	p.R314H	ENST00000334344	NM_152641.2	314	cGt/cAt																																																																															
VHL	7428	MSKCC	GRCh37	3	10183616	10183616	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1277221408		P-0063240-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			610	321	539	0	ENST00000256474.2:c.85G>A	p.Gly29Ser	p.G29S	ENST00000256474	NM_000551.3	29	Ggc/Agc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258659	16258659	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0063240-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			195	780	573	0	ENST00000375759.3:c.5924del	p.Leu1975ProfsTer47	p.L1975Pfs*47	ENST00000375759	NM_015001.2	1975	cTc/cc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871152	12871153	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0063240-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			524	268	400	0	ENST00000228872.4:c.382_383dup	p.His129ArgfsTer17	p.H129Rfs*17	ENST00000228872	NM_004064.3	127	gac/gACac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061463	38061463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064042-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			268	222	310	1	ENST00000250448.2:c.526A>G	p.Ile176Val	p.I176V	ENST00000250448	NM_004496.3	176	Atc/Gtc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90634835	90634835	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064042-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			376	141	309	0	ENST00000330062.3:c.157A>G	p.Met53Val	p.M53V	ENST00000330062	NM_002168.2	53	Atg/Gtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0064042-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			68	97	164	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560349	95560349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064042-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			505	128	312	0	ENST00000343455.3:c.5240C>T	p.Ser1747Leu	p.S1747L	ENST00000343455	NM_177438.2	1747	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578230	7578231	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAAATACTCCACACGCAAATT			P-0064042-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			243	226	341	0	ENST00000269305.4:c.598_618dup	p.Asn200_Leu206dup	p.N200_L206dup	ENST00000269305	NM_001126112.2	200	-/AATTTGCGTGTGGAGTATTTG																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217900	2217900	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1304751376		P-0064042-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			178	139	321	0	ENST00000398665.3:c.2674A>G	p.Ser892Gly	p.S892G	ENST00000398665	NM_032482.2	892	Agc/Ggc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045718	47045718	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065077-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			310	31	440	0	ENST00000329236.7:c.2365C>T	p.Gln789Ter	p.Q789*	ENST00000329236	NM_001204466.1	789	Cag/Tag																																																																															
MET	4233	MSKCC	GRCh37	7	116412038	116412047	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGAAGGTAT	CAGAAGGTAT	-			P-0065077-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	29	391	0	ENST00000397752.3:c.3023_3028+4del		p.X1008_splice	ENST00000397752	NM_000245.2	1008																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5221135	5221135	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0065077-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			362	28	402	0	ENST00000357368.4:c.3331C>T	p.Gln1111Ter	p.Q1111*	ENST00000357368	NM_002850.3	1111	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0065219-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	96	244	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579494	7579494	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0065219-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	75	449	0	ENST00000269305.4:c.193A>T	p.Arg65Ter	p.R65*	ENST00000269305	NM_001126112.2	65	Aga/Tga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0065219-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	68	322	0	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101904869	101904869	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065219-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	83	329	0	ENST00000374994.4:c.857G>T	p.Gly286Val	p.G286V	ENST00000374994	NM_004612.2	286	gGa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0065331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	137	482	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867291	45867291	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199863965		P-0065331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	42	583	0	ENST00000391945.4:c.902C>T	p.Thr301Met	p.T301M	ENST00000391945	NM_000400.3	301	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112174437	112174437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs876658667		P-0065331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	109	415	0	ENST00000257430.4:c.3146G>A	p.Trp1049Ter	p.W1049*	ENST00000257430	NM_000038.5	1049	tGg/tAg																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56811554	56811554	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587780253		P-0065331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	57	289	0	ENST00000337432.4:c.1102C>T	p.Arg368Trp	p.R368W	ENST00000337432	NM_058216.2	368	Cgg/Tgg																																																																															
POLE	5426	MSKCC	GRCh37	12	133202314	133202314	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	57	505	0	ENST00000320574.5:c.6574G>T	p.Ala2192Ser	p.A2192S	ENST00000320574	NM_006231.2	2192	Gcg/Tcg																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032282	26032282	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	37	451	0	ENST00000244661.2:c.7C>G	p.Arg3Gly	p.R3G	ENST00000244661	NM_003537.3	3	Cgt/Ggt																																																																															
APC	324	MSKCC	GRCh37	5	112162927	112162927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	29	285	0	ENST00000257430.4:c.1532del	p.Gly511GlufsTer3	p.G511Efs*3	ENST00000257430	NM_000038.5	511	Gga/ga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187522509	187522509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	87	341	0	ENST00000441802.2:c.11554G>C	p.Glu3852Gln	p.E3852Q	ENST00000441802	NM_005245.3	3852	Gag/Cag																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99172034	99172034	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	141	453	0	ENST00000074304.5:c.1600G>A	p.Val534Met	p.V534M	ENST00000074304	NM_001134224.1	534	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0065980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	70	507	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168950	32168950	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	82	650	0	ENST00000375023.3:c.4083G>C	p.Glu1361Asp	p.E1361D	ENST00000375023	NM_004557.3	1361	gaG/gaC																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134885835	134885835	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	91	600	0	ENST00000398015.3:c.1746C>A	p.Tyr582Ter	p.Y582*	ENST00000398015	NM_004441.4	582	taC/taA																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12043155	12043155	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0065980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	54	337	0	ENST00000353533.5:c.1041-1G>A		p.X347_splice	ENST00000353533	NM_003010.3	347																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67589622	67589623	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATATGATAGATT			P-0065980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	28	376	0	ENST00000274335.5:c.1392_1403dup	p.Asp464_Tyr467dup	p.D464_Y467dup	ENST00000274335		464	gaa/gaATATGATAGATTa																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46715699	46715699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1421471663		P-0065980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	67	487	0	ENST00000371975.4:c.118G>A	p.Glu40Lys	p.E40K	ENST00000371975	NM_003579.3	40	Gag/Aag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15989609	15989609	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	57	441	0	ENST00000268712.3:c.3164del	p.Gly1055AlafsTer12	p.G1055Afs*12	ENST00000268712	NM_006311.3	1055	gGc/gc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217762	7217810	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCAAACGAAGAAATCAAAGCTGGGAAAGTTCAAGGGACTGCTTACTTGT	TCAAACGAAGAAATCAAAGCTGGGAAAGTTCAAGGGACTGCTTACTTGT	-			P-0065980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	71	600	0	ENST00000380728.2:c.201_205-40del		p.X67_splice	ENST00000380728		67																																																																																
MET	4233	MSKCC	GRCh37	7	116415025	116415025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	46	570	0	ENST00000397752.3:c.3119C>T	p.Ser1040Phe	p.S1040F	ENST00000397752	NM_000245.2	1040	tCt/tTt																																																																															
NBN	4683	MSKCC	GRCh37	8	90965821	90965821	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772411713		P-0065980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	33	479	0	ENST00000265433.3:c.1496C>T	p.Ser499Leu	p.S499L	ENST00000265433	NM_002485.4	499	tCa/tTa																																																																															
REL	5966	MSKCC	GRCh37	2	61121563	61121563	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1190862054		P-0065980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	54	482	0	ENST00000295025.8:c.185G>A	p.Arg62Lys	p.R62K	ENST00000295025	NM_002908.2	62	aGa/aAa																																																																															
ATM	472	MSKCC	GRCh37	11	108129715	108129715	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0065980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	25	374	0	ENST00000278616.4:c.2379G>C	p.Lys793Asn	p.K793N	ENST00000278616	NM_000051.3	793	aaG/aaC																																																																															
MED12	9968	MSKCC	GRCh37	X	70344186	70344186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	29	464	0	ENST00000374080.3:c.1922C>T	p.Ala641Val	p.A641V	ENST00000374080		641	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578226	7578226	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1464727668		P-0066392-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	144	335	0	ENST00000269305.4:c.623A>T	p.Asp208Val	p.D208V	ENST00000269305	NM_001126112.2	208	gAc/gTc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482393	56482393	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066392-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	124	257	0	ENST00000267101.3:c.941A>C	p.Lys314Thr	p.K314T	ENST00000267101	NM_001982.3	314	aAa/aCa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223798	53223798	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066392-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	102	397	0	ENST00000375401.3:c.3561del	p.Cys1188ValfsTer76	p.C1188Vfs*76	ENST00000375401	NM_004187.3	1187	atC/at																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849905	156850463	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCACCTACGGCAAGCAGCCCTGGTACCAGCTCTCCAACACGGAGGTCAGCCCCGGCCCATGGTCACCCCTTGCTGGCCTCCCCGTCCCATGCCCCTTCAGGTTCCTTTTTCAGGGAACTCGGTTCCCCTTCTGCCCCTCTGCCACAGCCTGTTGGGGGGCCCTTTCCAGCGCCGTGCCCACACTGTGTCCCCTCCACTGTGGCCCTTTTCTTCTCTTCCTCCCTTATTCTTGCCTTCACCTACTGTCCTAAGCCCAGGCCCAGTTGGCCCCTGGGGGAACCTCAAAGTGCTTTGTACAAGGAGCCCAGACCCCCATCCCTAGCTGCATTTTATAGACCTAAGCAGGAATTATCAGAGTGGAAGGGACCAGCACGGGAAGAGGAACCCAGCACAAGAAGGCCCAACACTGCAGCAGGACGGCTGGAGGTTAGACTGTCAGAAGGACAGTCCTACCCCCTCCCCCTGCCCTCCTAGCTGGCCACAGCCAGAGCAGGCCCCAGGTGTTCTGTCTCCCAGAGCAGCTGCCCCCACCCCCTGCTTGGCTCGCAGCTGTCAGTT	TTCACCTACGGCAAGCAGCCCTGGTACCAGCTCTCCAACACGGAGGTCAGCCCCGGCCCATGGTCACCCCTTGCTGGCCTCCCCGTCCCATGCCCCTTCAGGTTCCTTTTTCAGGGAACTCGGTTCCCCTTCTGCCCCTCTGCCACAGCCTGTTGGGGGGCCCTTTCCAGCGCCGTGCCCACACTGTGTCCCCTCCACTGTGGCCCTTTTCTTCTCTTCCTCCCTTATTCTTGCCTTCACCTACTGTCCTAAGCCCAGGCCCAGTTGGCCCCTGGGGGAACCTCAAAGTGCTTTGTACAAGGAGCCCAGACCCCCATCCCTAGCTGCATTTTATAGACCTAAGCAGGAATTATCAGAGTGGAAGGGACCAGCACGGGAAGAGGAACCCAGCACAAGAAGGCCCAACACTGCAGCAGGACGGCTGGAGGTTAGACTGTCAGAAGGACAGTCCTACCCCCTCCCCCTGCCCTCCTAGCTGGCCACAGCCAGAGCAGGCCCCAGGTGTTCTGTCTCCCAGAGCAGCTGCCCCCACCCCCTGCTTGGCTCGCAGCTGTCAGTT	-			P-0066392-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	36	251	0	ENST00000524377.1:c.2162_2205+515del		p.X721_splice	ENST00000524377	NM_002529.3	721																																																																																
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0067001-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			718	15	577	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579349	7579349	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067001-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			763	27	534	0	ENST00000269305.4:c.338T>G	p.Phe113Cys	p.F113C	ENST00000269305	NM_001126112.2	113	tTc/tGc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729094	66729099	+	inframe_deletion	In_Frame_Del	DEL	TGGAGA	TGGAGA	-			P-0067001-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			726	71	495	0	ENST00000307102.5:c.303_308del	p.Glu102_Ile103del	p.E102_I103del	ENST00000307102	NM_002755.3	101	cTGGAGAtc/ctc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878916	151878916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067001-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			756	43	505	0	ENST00000262189.6:c.6029C>T	p.Pro2010Leu	p.P2010L	ENST00000262189	NM_170606.2	2010	cCa/cTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29546107	29546108	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0067001-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			678	63	459	0	ENST00000358273.4:c.1613dup	p.Met538IlefsTer20	p.M538Ifs*20	ENST00000358273	NM_001042492.2	538	atg/aTtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0067075-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	158	444	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067075-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	12	474	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067075-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	68	488	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176709505	176709505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067075-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	32	393	0	ENST00000439151.2:c.5932G>A	p.Glu1978Lys	p.E1978K	ENST00000439151	NM_022455.4	1978	Gaa/Aaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879331	151879331	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067075-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			724	75	580	0	ENST00000262189.6:c.5614C>T	p.Gln1872Ter	p.Q1872*	ENST00000262189	NM_170606.2	1872	Cag/Tag																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115273033	115273033	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1230709037		P-0067075-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	59	510	0	ENST00000438362.2:c.1340C>T	p.Ser447Phe	p.S447F	ENST00000438362	NM_001242891.1	447	tCt/tTt																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29207729	29207729	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067075-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	73	589	0	ENST00000240100.2:c.67G>C	p.Glu23Gln	p.E23Q	ENST00000240100	NM_001394.6	23	Gag/Cag																																																																															
RXRA	6256	MSKCC	GRCh37	9	137293529	137293529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067075-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			699	81	644	0	ENST00000481739.1:c.80C>T	p.Ser27Phe	p.S27F	ENST00000481739	NM_002957.4	27	tCc/tTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884822	151884822	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067075-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	28	464	0	ENST00000262189.6:c.4771C>T	p.Gln1591Ter	p.Q1591*	ENST00000262189	NM_170606.2	1591	Caa/Taa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37872841	37872841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067075-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	105	593	0	ENST00000269571.5:c.1720G>T	p.Val574Leu	p.V574L	ENST00000269571		574	Gtg/Ttg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25973266	25973266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067075-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	55	530	0	ENST00000435504.4:c.1159G>A	p.Glu387Lys	p.E387K	ENST00000435504		387	Gaa/Aaa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913315		P-0067125-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			617	103	483	0	ENST00000326873.7:c.580G>A	p.Asp194Asn	p.D194N	ENST00000326873	NM_000455.4	194	Gac/Aac																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81819648	81819648	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067125-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			646	95	391	0	ENST00000359376.3:c.54C>G	p.Ile18Met	p.I18M	ENST00000359376	NM_002661.3	18	atC/atG																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288339	21288339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067125-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			732	123	419	0	ENST00000354336.3:c.584C>T	p.Ser195Phe	p.S195F	ENST00000354336	NM_005207.3	195	tCc/tTc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519733		P-0067331-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			454	40	331	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578440	7578440	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0067331-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			435	33	397	0	ENST00000269305.4:c.490A>T	p.Lys164Ter	p.K164*	ENST00000269305	NM_001126112.2	164	Aag/Tag																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354292	15354292	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067331-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			277	20	248	0	ENST00000263377.2:c.2588A>G	p.His863Arg	p.H863R	ENST00000263377	NM_058243.2	863	cAc/cGc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220426	1220427	+	missense_variant	Missense_Mutation	DNP	GC	GC	TG			P-0067331-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			354	28	407	0	ENST00000326873.7:c.519_520delinsTG	p.His174Asp	p.H174D	ENST00000326873	NM_000455.4	173	gtGCac/gtTGac																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99459981	99459981	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067331-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			395	23	273	0	ENST00000268035.6:c.2077G>T	p.Gly693Cys	p.G693C	ENST00000268035	NM_000875.3	693	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178948136	178948136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	17	297	0	ENST00000263967.3:c.2908G>A	p.Glu970Lys	p.E970K	ENST00000263967	NM_006218.2	970	Gaa/Aaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061149	38061202	+	inframe_deletion	In_Frame_Del	DEL	GCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTG	GCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTG	-			P-0067813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	208	365	0	ENST00000250448.2:c.787_840del	p.Gln263_Ser280del	p.Q263_S280del	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGC/-																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880984	37880985	+	inframe_insertion	In_Frame_Ins	INS	-	-	TACGTGATGGCT			P-0068134-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			867	1219	170	0	ENST00000269571.5:c.2314_2325dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/TACGTGATGGCT																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944142	81944180	+	frameshift_variant	Frame_Shift_Del	DEL	AGCACTGCCGGATCCGCTCCACCATGGAGGGCGGGACCC	AGCACTGCCGGATCCGCTCCACCATGGAGGGCGGGACCC	CAGGACCG			P-0068134-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			117	232	245	1	ENST00000359376.3:c.1751_1789delinsCAGGACCG	p.Gln584ProfsTer4	p.Q584Pfs*4	ENST00000359376	NM_002661.3	584	cAGCACTGCCGGATCCGCTCCACCATGGAGGGCGGGACCCtg/cCAGGACCGtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0068180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	31	523	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0068180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	64	481	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266711	198266711	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0068180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	104	417	0	ENST00000335508.6:c.2221A>G	p.Lys741Glu	p.K741E	ENST00000335508	NM_012433.2	741	Aag/Gag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044541	47044541	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	151	416	0	ENST00000329236.7:c.1804C>T	p.Arg602Ter	p.R602*	ENST00000329236	NM_001204466.1	602	Cga/Tga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044525	47044525	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	149	396	0	ENST00000329236.7:c.1788G>T	p.Gln596His	p.Q596H	ENST00000329236	NM_001204466.1	596	caG/caT																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780711	9780711	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	74	316	0	ENST00000377346.4:c.1513G>T	p.Glu505Ter	p.E505*	ENST00000377346	NM_005026.3	505	Gag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29483074	29483074	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs753189381		P-0068180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	115	352	0	ENST00000358273.4:c.134A>G	p.Asn45Ser	p.N45S	ENST00000358273	NM_001042492.2	45	aAt/aGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29686003	29686003	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	GG			P-0068180-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	70	302	0	ENST00000358273.4:c.8130delinsGG	p.Leu2711ValfsTer19	p.L2711Vfs*19	ENST00000358273	NM_001042492.2	2710	ggC/ggGG																																																																															
CBL	867	MSKCC	GRCh37	11	119149353	119149355	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0068292-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			249	14	465	0	ENST00000264033.4:c.1363_1365del	p.Tyr455del	p.Y455del	ENST00000264033	NM_005188.3	454	aATTat/aat																																																																															
CBL	867	MSKCC	GRCh37	11	119149355	119149355	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068292-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			90	186	477	0	ENST00000264033.4:c.1363T>G	p.Tyr455Asp	p.Y455D	ENST00000264033	NM_005188.3	455	Tat/Gat																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134514508	134514508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776344329		P-0068376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	77	307	0	ENST00000398015.3:c.35C>T	p.Ala12Val	p.A12V	ENST00000398015	NM_004441.4	12	gCa/gTa																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0068377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	203	292	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69069640	69069640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	281	209	2	ENST00000288368.4:c.4315G>A	p.Glu1439Lys	p.E1439K	ENST00000288368	NM_024870.2	1439	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7573993	7573994	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCAGCTCTCGGAACATCTCGAA			P-0068377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	138	219	0	ENST00000269305.4:c.1012_1033dup	p.Asn345IlefsTer9	p.N345Ifs*9	ENST00000269305	NM_001126112.2	345	aat/aTTCGAGATGTTCCGAGAGCTGAat																																																																															
PREX2	80243	MSKCC	GRCh37	8	69069621	69069621	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	254	204	1	ENST00000288368.4:c.4296G>C	p.Gln1432His	p.Q1432H	ENST00000288368	NM_024870.2	1432	caG/caC																																																																															
BRAF	673	MSKCC	GRCh37	7	140477826	140477840	+	inframe_deletion	In_Frame_Del	DEL	CTGCTGAGGTGTAGG	CTGCTGAGGTGTAGG	-			P-0068377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	128	190	0	ENST00000288602.6:c.1468_1482del	p.Pro490_Gln494del	p.P490_Q494del	ENST00000288602	NM_004333.4	490	CCTACACCTCAGCAG/-																																																																															
PREX2	80243	MSKCC	GRCh37	8	69068893	69069607	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATCTGAAAGAGGTAGCTTTGAACTTAGGCTTAAATATAACCATTTTCTACTGAGAAGAAGGGTCTAGGGAAGGCCCAGTTATGGGGAGGTGACCAGGAAAGCACCATAAAAAAAAGGGTAAGATTTGTTGTGCAGATAAAACTATCTGTGATCATCTTCCTTCTCTTCCTAGTACAGAGGGGGAGACACTGTTACAAGTAGAGGTTTCCTTTATGGATGTAAATTTTCCTTATCAAAGGGAAACTTCTACTCGGTTTTCAGAGTTTCTCCTGTGTCTGCGTGCAGTTTCTCAAAATAACCAGATCAAAATAATCCTTATGCCAATGAGGCATATTTTGGGGTGATATATTCTGGTCTCCTACAGTTATATTTTGGAGCGGCATATTTTGGGCTCCCACAACATATACAAAATGTTTTAAAAATAGAGGACAGTTAAACCAGAAATTTTCTTTGCCCATTGGACAGAAAAATCACCAAATGTTTGATATTTATTTTGAGAGCAGAACAGTTTTCATTCATTTTTGGACCTAACATAGTTTTTTTGCATATATGTTGATAATTGGTCCTATTTGCTAAATTTACTAATAATCAATAAAATTATACTACACGTGGAGAAATTGAGTTATAAAGTTGCTTGTAAAATATGTTTACTTGTTTACACAGCACTAGAGAGCATGGAAGGATATTATTACAGAGACAATGTTTCTGTGGAAG	AATCTGAAAGAGGTAGCTTTGAACTTAGGCTTAAATATAACCATTTTCTACTGAGAAGAAGGGTCTAGGGAAGGCCCAGTTATGGGGAGGTGACCAGGAAAGCACCATAAAAAAAAGGGTAAGATTTGTTGTGCAGATAAAACTATCTGTGATCATCTTCCTTCTCTTCCTAGTACAGAGGGGGAGACACTGTTACAAGTAGAGGTTTCCTTTATGGATGTAAATTTTCCTTATCAAAGGGAAACTTCTACTCGGTTTTCAGAGTTTCTCCTGTGTCTGCGTGCAGTTTCTCAAAATAACCAGATCAAAATAATCCTTATGCCAATGAGGCATATTTTGGGGTGATATATTCTGGTCTCCTACAGTTATATTTTGGAGCGGCATATTTTGGGCTCCCACAACATATACAAAATGTTTTAAAAATAGAGGACAGTTAAACCAGAAATTTTCTTTGCCCATTGGACAGAAAAATCACCAAATGTTTGATATTTATTTTGAGAGCAGAACAGTTTTCATTCATTTTTGGACCTAACATAGTTTTTTTGCATATATGTTGATAATTGGTCCTATTTGCTAAATTTACTAATAATCAATAAAATTATACTACACGTGGAGAAATTGAGTTATAAAGTTGCTTGTAAAATATGTTTACTTGTTTACACAGCACTAGAGAGCATGGAAGGATATTATTACAGAGACAATGTTTCTGTGGAAG	-			P-0068377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			3	221	0	0	ENST00000288368.4:c.4232-661_4285del		p.X1411_splice	ENST00000288368	NM_024870.2	1411																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49444806	49444810	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGG	CCAGG	T			P-0068377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	237	364	0	ENST00000301067.7:c.2656_2660delinsA	p.Pro886ArgfsTer43	p.P886Rfs*43	ENST00000301067	NM_003482.3	886	CCTGGg/Ag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0068467-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			427	91	287	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
RIT1	6016	MSKCC	GRCh37	1	155880451	155880451	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068467-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			422	76	321	0	ENST00000368323.3:c.102G>C	p.Lys34Asn	p.K34N	ENST00000368323	NM_006912.5	34	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068467-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	143	441	0	ENST00000269305.4:c.548C>A	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tAa																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202468	67202482	+	inframe_deletion	In_Frame_Del	DEL	AGTTCTCCCCTTTTG	AGTTCTCCCCTTTTG	-			P-0068467-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			762	151	362	0	ENST00000312629.5:c.1279_1293del	p.Phe427_Glu431del	p.F427_E431del	ENST00000312629	NM_003952.2	426	aAGTTCTCCCCTTTTGag/aag																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80409408	80409408	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068467-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			208	80	213	0	ENST00000286548.4:c.706G>C	p.Asp236His	p.D236H	ENST00000286548	NM_002072.3	236	Gat/Cat																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139407981	139407981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068467-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	102	318	0	ENST00000277541.6:c.2216G>A	p.Cys739Tyr	p.C739Y	ENST00000277541	NM_017617.3	739	tGc/tAc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32820190	32820190	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs757711839		P-0068467-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			421	73	365	0	ENST00000354258.4:c.868C>G	p.Leu290Val	p.L290V	ENST00000354258	NM_000593.5	290	Ctc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0068510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	30	396	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24134024	24134024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	16	382	0	ENST00000263121.7:c.175G>A	p.Glu59Lys	p.E59K	ENST00000263121	NM_003073.3	59	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974675	21974675	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0068510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	20	349	0	ENST00000304494.5:c.150+2T>A		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0068510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			51	11	215	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741474	17741474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	24	304	0	ENST00000250003.3:c.145C>T	p.Arg49Cys	p.R49C	ENST00000250003	NM_002478.4	49	Cgc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0068525-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			369	91	417	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044967	47044967	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068525-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			203	110	284	0	ENST00000329236.7:c.2059C>T	p.Arg687Ter	p.R687*	ENST00000329236	NM_001204466.1	687	Cga/Tga																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216667	2216668	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0068525-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			579	33	634	0	ENST00000398665.3:c.2314_2315dup	p.Arg773LeufsTer10	p.R773Lfs*10	ENST00000398665	NM_032482.2	771	tac/tACac																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476370	88476370	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068525-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			369	38	444	0	ENST00000360948.2:c.1762G>T	p.Glu588Ter	p.E588*	ENST00000360948	NM_001012338.2	588	Gag/Tag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69005931	69005931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068525-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			423	26	380	0	ENST00000288368.4:c.2342G>A	p.Gly781Glu	p.G781E	ENST00000288368	NM_024870.2	781	gGg/gAg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0068629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	445	439	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108214065	108214074	+	frameshift_variant	Frame_Shift_Del	DEL	TTTCAGTGCC	TTTCAGTGCC	-	rs1300297318		P-0068629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	75	410	0	ENST00000278616.4:c.8395_8404del	p.Phe2799LysfsTer4	p.F2799Kfs*4	ENST00000278616	NM_000051.3	2795	gaTTTCAGTGCC/ga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115796	8115796	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0068629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			788	76	547	0	ENST00000346208.3:c.1142C>G	p.Ser381Ter	p.S381*	ENST00000346208		381	tCa/tGa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021817	71021817	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs797045586		P-0068644-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	65	325	0	ENST00000318789.4:c.1541G>A	p.Arg514His	p.R514H	ENST00000318789	NM_032682.5	514	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0068649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	309	790	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	87	646	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																															
ALK	238	MSKCC	GRCh37	2	29551307	29551307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	90	763	0	ENST00000389048.3:c.1323C>A	p.Phe441Leu	p.F441L	ENST00000389048	NM_004304.4	441	ttC/ttA																																																																															
APC	324	MSKCC	GRCh37	5	112157658	112157658	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	141	420	0	ENST00000257430.4:c.1378G>T	p.Glu460Ter	p.E460*	ENST00000257430	NM_000038.5	460	Gaa/Taa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46275987	46275987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1236	70	702	2	ENST00000371998.3:c.3423G>T	p.Gln1141His	p.Q1141H	ENST00000371998		1141	caG/caT																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103504553	103504553	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	111	576	0	ENST00000355739.4:c.174G>T	p.Leu58Phe	p.L58F	ENST00000355739	NM_000123.3	58	ttG/ttT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307586	118307586	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			820	93	653	0	ENST00000534358.1:c.359C>A	p.Ala120Asp	p.A120D	ENST00000534358	NM_005933.3	120	gCc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	27	662	1	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21968233	21968233	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	33	521	0	ENST00000304494.5:c.466del	p.Asp156IlefsTer37	p.D156Ifs*37	ENST00000304494	NM_000077.4	156	Gat/at																																																																															
FLT1	2321	MSKCC	GRCh37	13	28880909	28880909	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0068652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	30	542	0	ENST00000282397.4:c.3721G>A	p.Asp1241Asn	p.D1241N	ENST00000282397	NM_002019.4	1241	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0068652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	40	357	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11106958	11106958	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	32	696	0	ENST00000344626.4:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000344626	NM_003072.3	555	Cag/Tag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222853	36222853	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	31	660	0	ENST00000222270.7:c.5482G>C	p.Val1828Leu	p.V1828L	ENST00000222270	NM_014727.1	1828	Gtc/Ctc																																																																															
ALK	238	MSKCC	GRCh37	2	29462569	29462569	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	23	588	0	ENST00000389048.3:c.2332C>A	p.Gln778Lys	p.Q778K	ENST00000389048	NM_004304.4	778	Cag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0068661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	21	296	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0068981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	372	484	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549383	21549383	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749117314		P-0068981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	81	540	0	ENST00000382592.4:c.2893G>A	p.Asp965Asn	p.D965N	ENST00000382592	NM_014572.2	965	Gat/Aat																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004879	150004879	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs769204431		P-0068981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	237	554	0	ENST00000253339.5:c.1346A>G	p.His449Arg	p.H449R	ENST00000253339		449	cAt/cGt																																																																															
MGA	23269	MSKCC	GRCh37	15	42005463	42005463	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	338	551	0	ENST00000219905.7:c.3199C>T	p.Gln1067Ter	p.Q1067*	ENST00000219905	NM_001164273.1	1067	Caa/Taa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206785	36206785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	253	560	0	ENST00000300305.3:c.727C>T	p.Pro243Ser	p.P243S	ENST00000300305		243	Cca/Tca																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968197	134968197	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs780597750		P-0068981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	190	485	0	ENST00000398015.3:c.2710G>T	p.Asp904Tyr	p.D904Y	ENST00000398015	NM_004441.4	904	Gac/Tac																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241925	72241925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	73	472	0	ENST00000357731.5:c.465C>A	p.Asn155Lys	p.N155K	ENST00000357731	NM_173808.2	155	aaC/aaA																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46738376	46738376	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	127	494	0	ENST00000371975.4:c.1277G>C	p.Arg426Thr	p.R426T	ENST00000371975	NM_003579.3	426	aGg/aCg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599103	28599103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	36	557	0	ENST00000253063.3:c.549G>C	p.Lys183Asn	p.K183N	ENST00000253063	NM_031459.4	183	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577599	7577600	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0069035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	54	346	0	ENST00000269305.4:c.681dup	p.Asp228Ter	p.D228*	ENST00000269305	NM_001126112.2	227	-/T																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624290	89624290	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	36	224	0	ENST00000371953.3:c.64G>T	p.Asp22Tyr	p.D22Y	ENST00000371953	NM_000314.4	22	Gac/Tac																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38962983	38962983	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1292288715		P-0069035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	52	302	1	ENST00000357387.3:c.1561C>T	p.Leu521Phe	p.L521F	ENST00000357387	NM_152756.3	521	Ctt/Ttt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653838	89653838	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0069035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	38	263	0	ENST00000371953.3:c.136T>C	p.Tyr46His	p.Y46H	ENST00000371953	NM_000314.4	46	Tac/Cac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425853	49425853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772665565		P-0069035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	73	556	0	ENST00000301067.7:c.12635G>A	p.Arg4212Gln	p.R4212Q	ENST00000301067	NM_003482.3	4212	cGg/cAg																																																																															
TEK	7010	MSKCC	GRCh37	9	27173298	27173298	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753348341		P-0069035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	59	395	0	ENST00000380036.4:c.839G>A	p.Cys280Tyr	p.C280Y	ENST00000380036	NM_000459.3	280	tGt/tAt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38172945	38172945	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0069035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	112	302	0	ENST00000317025.8:c.2104A>T	p.Thr702Ser	p.T702S	ENST00000317025	NM_023034.1	702	Act/Tct																																																																															
AKT1	207	MSKCC	GRCh37	14	105239324	105239324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	93	563	0	ENST00000349310.3:c.1063G>A	p.Glu355Lys	p.E355K	ENST00000349310	NM_001014432.1	355	Gag/Aag																																																																															
ALK	238	MSKCC	GRCh37	2	29498270	29498270	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0069035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	46	398	0	ENST00000389048.3:c.1910C>G	p.Thr637Ser	p.T637S	ENST00000389048	NM_004304.4	637	aCc/aGc																																																																															
MYC	4609	MSKCC	GRCh37	8	128753028	128753028	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0069035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	146	407	0	ENST00000377970.2:c.1189C>G	p.Pro397Ala	p.P397A	ENST00000377970	NM_002467.4	397	Ccg/Gcg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39570424	39570424	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0069035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	16	220	0	ENST00000262039.4:c.620G>A	p.Ser207Asn	p.S207N	ENST00000262039	NM_002647.2	207	aGt/aAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434880	49434880	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0069035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	92	512	0	ENST00000301067.7:c.6673G>T	p.Glu2225Ter	p.E2225*	ENST00000301067	NM_003482.3	2225	Gaa/Taa																																																																															
TERT	7015	MSKCC	GRCh37	5	1253908	1253908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	32	400	0	ENST00000310581.5:c.3334C>A	p.Leu1112Met	p.L1112M	ENST00000310581	NM_198253.2	1112	Ctg/Atg																																																																															
POT1	25913	MSKCC	GRCh37	7	124483003	124483003	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs767757297		P-0069035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	16	278	0	ENST00000357628.3:c.1021C>A	p.Gln341Lys	p.Q341K	ENST00000357628	NM_015450.2	341	Cag/Aag																																																																															
MYC	4609	MSKCC	GRCh37	8	128752944	128752944	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0069035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			718	157	384	0	ENST00000377970.2:c.1105G>T	p.Val369Phe	p.V369F	ENST00000377970	NM_002467.4	369	Gtc/Ttc																																																																															
RET	5979	MSKCC	GRCh37	10	43609034	43609034	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1249950304		P-0069035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	69	532	0	ENST00000355710.3:c.1790G>A	p.Gly597Glu	p.G597E	ENST00000355710	NM_020975.4	597	gGg/gAg																																																																															
MYC	4609	MSKCC	GRCh37	8	128752927	128752927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0069035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	153	371	0	ENST00000377970.2:c.1088C>T	p.Ser363Leu	p.S363L	ENST00000377970	NM_002467.4	363	tCg/tTg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267481	198267481	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs769888451		P-0062950-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			239	116	487	0	ENST00000335508.6:c.1876A>G	p.Asn626Asp	p.N626D	ENST00000335508	NM_012433.2	626	Aac/Gac																																																																															
FLT3	2322	MSKCC	GRCh37	13	28626786	28626786	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0062950-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			299	125	372	0	ENST00000241453.7:c.510A>C	p.Arg170Ser	p.R170S	ENST00000241453	NM_004119.2	170	agA/agC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425853	49425853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772665565		P-0065030-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			549	36	525	0	ENST00000301067.7:c.12635G>A	p.Arg4212Gln	p.R4212Q	ENST00000301067	NM_003482.3	4212	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0065030-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	21	290	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577060	7577069	+	frameshift_variant	Frame_Shift_Del	DEL	CCTTTCTTGC	CCTTTCTTGC	GCAAGAAA			P-0065030-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			511	45	538	0	ENST00000269305.4:c.869_878delinsTTTCTTGC	p.Arg290LeufsTer15	p.R290Lfs*15	ENST00000269305	NM_001126112.2	290	cGCAAGAAAGGg/cTTTCTTGCg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524444	44524444	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065030-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			439	34	348	0	ENST00000291552.4:c.113A>T	p.Asn38Ile	p.N38I	ENST00000291552	NM_006758.2	38	aAt/aTt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193121512	193121512	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0065030-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	31	296	0	ENST00000367435.3:c.910A>G	p.Thr304Ala	p.T304A	ENST00000367435	NM_024529.4	304	Acg/Gcg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0068397-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			680	38	479	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579582	7579583	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0068397-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			656	119	706	0	ENST00000269305.4:c.104dup	p.Leu35PhefsTer8	p.L35Ffs*8	ENST00000269305	NM_001126112.2	35	ttg/ttTg																																																																															
VHL	7428	MSKCC	GRCh37	3	10183655	10183655	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068397-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			768	65	790	0	ENST00000256474.2:c.124G>C	p.Glu42Gln	p.E42Q	ENST00000256474	NM_000551.3	42	Gag/Cag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134885835	134885835	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068397-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			796	99	636	0	ENST00000398015.3:c.1746C>A	p.Tyr582Ter	p.Y582*	ENST00000398015	NM_004441.4	582	taC/taA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0068397-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			496	117	363	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751391	57751391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068397-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			854	56	683	1	ENST00000274289.3:c.1600C>T	p.His534Tyr	p.H534Y	ENST00000274289	NM_006622.3	534	Cac/Tac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603078	48603078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068397-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			576	99	496	0	ENST00000342988.3:c.1379C>T	p.Ala460Val	p.A460V	ENST00000342988	NM_005359.5	460	gCc/gTc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779489	3779489	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068397-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			971	70	836	0	ENST00000262367.5:c.5559G>T	p.Gln1853His	p.Q1853H	ENST00000262367	NM_004380.2	1853	caG/caT																																																																															
POT1	25913	MSKCC	GRCh37	7	124464126	124464126	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0068397-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			619	66	388	0	ENST00000357628.3:c.1795G>C	p.Ala599Pro	p.A599P	ENST00000357628	NM_015450.2	599	Gca/Cca																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177642	56177642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068397-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			854	55	674	0	ENST00000399503.3:c.2615G>A	p.Gly872Asp	p.G872D	ENST00000399503	NM_005921.1	872	gGc/gAc																																																																															
TEK	7010	MSKCC	GRCh37	9	27212720	27212720	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068397-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			742	41	629	0	ENST00000380036.4:c.2702C>A	p.Ala901Asp	p.A901D	ENST00000380036	NM_000459.3	901	gCc/gAc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228158	53228158	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0068397-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			651	119	770	0	ENST00000375401.3:c.2243+1G>T		p.X748_splice	ENST00000375401	NM_004187.3	748																																																																																
H3F3C	440093	MSKCC	GRCh37	12	31944707	31944707	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068397-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			65	15	44	0	ENST00000340398.3:c.394G>T	p.Gly132Ter	p.G132*	ENST00000340398	NM_001013699.2	132	Gga/Tga																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40681810	40681810	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0068397-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			522	47	465	0	ENST00000249776.8:c.589C>T	p.Gln197Ter	p.Q197*	ENST00000249776	NM_033286.3	197	Cag/Tag																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94212886	94212886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068397-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			770	55	426	0	ENST00000323929.3:c.356C>T	p.Ser119Leu	p.S119L	ENST00000323929	NM_005591.3	119	tCa/tTa																																																																															
TP63	8626	MSKCC	GRCh37	3	189456444	189456444	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1330936376		P-0068397-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			670	94	568	0	ENST00000264731.3:c.205G>C	p.Val69Leu	p.V69L	ENST00000264731	NM_003722.4	69	Gtt/Ctt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375368	118375368	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068397-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			884	53	718	0	ENST00000534358.1:c.8761G>C	p.Glu2921Gln	p.E2921Q	ENST00000534358	NM_005933.3	2921	Gag/Cag																																																																															
CDH1	999	MSKCC	GRCh37	16	68857430	68857430	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	100	392	0	ENST00000261769.5:c.2065G>T	p.Glu689Ter	p.E689*	ENST00000261769	NM_004360.3	689	Gaa/Taa																																																																															
MCL1	4170	MSKCC	GRCh37	1	150550728	150550731	+	frameshift_variant	Frame_Shift_Del	DEL	TTTG	TTTG	-			P-0068665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	110	462	0	ENST00000369026.2:c.925_928del	p.Gln309GlufsTer12	p.Q309Efs*12	ENST00000369026	NM_021960.4	309	CAAAga/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0068669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			60	350	548	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827886	40827886	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201911869		P-0068669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	237	630	0	ENST00000373198.4:c.2542G>A	p.Gly848Arg	p.G848R	ENST00000373198	NM_133170.3	848	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112137078	112137078	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0068669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	74	387	0	ENST00000257430.4:c.832C>T	p.Gln278Ter	p.Q278*	ENST00000257430	NM_000038.5	278	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0068669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	232	576	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
AR	367	MSKCC	GRCh37	X	66765382	66765382	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770661499		P-0068669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	225	721	0	ENST00000374690.3:c.394G>A	p.Val132Ile	p.V132I	ENST00000374690	NM_000044.3	132	Gtc/Atc																																																																															
POLE	5426	MSKCC	GRCh37	12	133245071	133245071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs878854848		P-0068669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	249	737	0	ENST00000320574.5:c.2044G>A	p.Glu682Lys	p.E682K	ENST00000320574	NM_006231.2	682	Gaa/Aaa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14020474	14020474	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	151	606	0	ENST00000311895.7:c.445T>G	p.Leu149Val	p.L149V	ENST00000311895	NM_005236.2	149	Ttg/Gtg																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86546675	86546675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	90	548	0	ENST00000262426.4:c.1124A>G	p.Lys375Arg	p.K375R	ENST00000262426	NM_001451.2	375	aAg/aGg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348782	89348782	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201207422		P-0068669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	31	779	2	ENST00000301030.4:c.4168G>A	p.Gly1390Ser	p.G1390S	ENST00000301030	NM_001256183.1	1390	Ggc/Agc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52719291	52719291	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	345	694	0	ENST00000322088.6:c.957G>C	p.Glu319Asp	p.E319D	ENST00000322088	NM_014225.5	319	gaG/gaC																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119721071	119721071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	127	482	0	ENST00000316626.5:c.104G>A	p.Ser35Asn	p.S35N	ENST00000316626		35	aGc/aAc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117650498	117650498	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	162	629	0	ENST00000368508.3:c.5360A>G	p.Glu1787Gly	p.E1787G	ENST00000368508	NM_002944.2	1787	gAg/gGg																																																																															
MET	4233	MSKCC	GRCh37	7	116381046	116381046	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			754	161	640	0	ENST00000397752.3:c.1668G>T	p.Trp556Cys	p.W556C	ENST00000397752	NM_000245.2	556	tgG/tgT																																																																															
SYK	6850	MSKCC	GRCh37	9	93606545	93606545	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	105	623	0	ENST00000375746.1:c.365A>G	p.Asp122Gly	p.D122G	ENST00000375746	NM_001174167.1	122	gAt/gGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0068671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	27	182	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0068671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	54	238	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																															
RAB35	11021	MSKCC	GRCh37	12	120541715	120541715	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1261521534		P-0068671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			770	68	289	0	ENST00000229340.5:c.142C>T	p.Arg48Trp	p.R48W	ENST00000229340	NM_006861.6	48	Cgg/Tgg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81929432	81929432	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775728338		P-0068671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			731	51	230	0	ENST00000359376.3:c.1093G>A	p.Asp365Asn	p.D365N	ENST00000359376	NM_002661.3	365	Gat/Aat																																																																															
ATRX	546	MSKCC	GRCh37	X	76938278	76938278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	59	221	0	ENST00000373344.5:c.2470G>A	p.Glu824Lys	p.E824K	ENST00000373344	NM_000489.3	824	Gag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853293	151853293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	59	244	0	ENST00000262189.6:c.11809G>A	p.Glu3937Lys	p.E3937K	ENST00000262189	NM_170606.2	3937	Gaa/Aaa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191216	185191216	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	69	247	0	ENST00000265026.3:c.2097C>G	p.Ile699Met	p.I699M	ENST00000265026	NM_004721.4	699	atC/atG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0068671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	37	175	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NF1	4763	MSKCC	GRCh37	17	29548886	29548886	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	25	247	0	ENST00000358273.4:c.1660C>T	p.Gln554Ter	p.Q554*	ENST00000358273	NM_001042492.2	554	Cag/Tag																																																																															
KLF5	688	MSKCC	GRCh37	13	73649905	73649905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	66	266	0	ENST00000377687.4:c.1255G>A	p.Glu419Lys	p.E419K	ENST00000377687	NM_001730.3	419	Gag/Aag																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30293171	30293171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	26	82	0	ENST00000322652.5:c.461C>T	p.Ser154Leu	p.S154L	ENST00000322652	NM_015355.2	154	tCa/tTa																																																																															
ABL1	25	MSKCC	GRCh37	9	133759433	133759433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	53	295	0	ENST00000318560.5:c.1756G>A	p.Glu586Lys	p.E586K	ENST00000318560	NM_005157.4	586	Gaa/Aaa																																																																															
MED12	9968	MSKCC	GRCh37	X	70357037	70357037	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0068671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			870	62	286	0	ENST00000374080.3:c.5552G>T	p.Gly1851Val	p.G1851V	ENST00000374080		1851	gGt/gTt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244049	41244049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	70	260	0	ENST00000357654.3:c.3499G>A	p.Glu1167Lys	p.E1167K	ENST00000357654	NM_007294.3	1167	Gaa/Aaa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2191146	2191146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			947	77	318	0	ENST00000398665.3:c.400G>A	p.Glu134Lys	p.E134K	ENST00000398665	NM_032482.2	134	Gag/Aag																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370856	55370856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	51	281	0	ENST00000297316.4:c.158G>A	p.Gly53Glu	p.G53E	ENST00000297316	NM_022454.3	53	gGa/gAa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964505	70964505	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			774	63	282	0	ENST00000276594.2:c.1523T>C	p.Ile508Thr	p.I508T	ENST00000276594	NM_024504.3	508	aTc/aCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0068682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	32	313	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	65	476	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	244	960	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2124258	2124258	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768683470		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	102	709	0	ENST00000219476.3:c.2413G>A	p.Val805Ile	p.V805I	ENST00000219476	NM_000548.3	805	Gtc/Atc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	75	771	7	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	145	752	10	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10260544	10260544	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1201583942		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	82	572	0	ENST00000340748.4:c.2318C>T	p.Pro773Leu	p.P773L	ENST00000340748		773	cCg/cTg																																																																															
IRF4	3662	MSKCC	GRCh37	6	397230	397230	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	93	781	0	ENST00000380956.4:c.615G>A	p.Trp205Ter	p.W205*	ENST00000380956	NM_001195286.1	205	tgG/tgA																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103504513	103504513	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140917545		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	74	483	0	ENST00000355739.4:c.134G>A	p.Arg45His	p.R45H	ENST00000355739	NM_000123.3	45	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	104	473	1	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	122	765	0	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	341245	341245	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1189783498		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	77	515	0	ENST00000262320.3:c.2239G>A	p.Ala747Thr	p.A747T	ENST00000262320	NM_003502.3	747	Gcg/Acg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053023	180053023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	25	848	3	ENST00000261937.6:c.1267del	p.Gln423ArgfsTer70	p.Q423Rfs*70	ENST00000261937	NM_182925.4	423	Cag/ag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610439	10610439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202181679		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	116	719	0	ENST00000171111.5:c.271G>A	p.Ala91Thr	p.A91T	ENST00000171111	NM_203500.1	91	Gcc/Acc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874637	35874637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	77	525	2	ENST00000303115.3:c.799del	p.Arg267GlyfsTer28	p.R267Gfs*28	ENST00000303115	NM_002185.3	265	Aaa/aa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048788	180048788	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375315719		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	103	818	0	ENST00000261937.6:c.1774C>T	p.Arg592Cys	p.R592C	ENST00000261937	NM_182925.4	592	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	106	623	2	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																															
TERT	7015	MSKCC	GRCh37	5	1255443	1255443	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763381198		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	86	715	0	ENST00000310581.5:c.3116C>T	p.Thr1039Met	p.T1039M	ENST00000310581	NM_198253.2	1039	aCg/aTg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56875722	56875722	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs768650810		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	107	657	1	ENST00000308159.5:c.2326C>T	p.Arg776Ter	p.R776*	ENST00000308159	NM_014669.4	776	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807902	3807902	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	91	631	0	ENST00000262367.5:c.3517C>T	p.Arg1173Ter	p.R1173*	ENST00000262367	NM_004380.2	1173	Cga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259480	16259480	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	100	802	0	ENST00000375759.3:c.6750del	p.Ala2251GlnfsTer102	p.A2251Qfs*102	ENST00000375759	NM_015001.2	2249	Ccc/cc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945961	17945961	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	72	756	0	ENST00000458235.1:c.1978del	p.Ala660LeufsTer10	p.A660Lfs*10	ENST00000458235	NM_000215.3	660	Gct/ct																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460538	8460538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772029273		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	68	568	0	ENST00000356435.5:c.3748G>A	p.Val1250Met	p.V1250M	ENST00000356435		1250	Gtg/Atg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403254	213403254	+	frameshift_variant,start_lost,start_retained_variant	Frame_Shift_Del	DEL	T	T	-			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	81	596	0	ENST00000342788.4:c.1del	p.Met1?	p.M1?	ENST00000342788	NM_005235.2	1	Atg/tg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	233	507	9	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907420	32907421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1253401667		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	102	629	1	ENST00000380152.3:c.1813dup	p.Ile605AsnfsTer11	p.I605Nfs*11	ENST00000380152		602	gga/ggAa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	68	495	1	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864658	68864658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1418006656		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	72	424	0	ENST00000288368.4:c.29G>A	p.Arg10His	p.R10H	ENST00000288368	NM_024870.2	10	cGc/cAc																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17384726	17384726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368554117		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	133	652	0	ENST00000359435.4:c.358G>A	p.Ala120Thr	p.A120T	ENST00000359435	NM_001033549.1	120	Gcc/Acc																																																																															
RET	5979	MSKCC	GRCh37	10	43601944	43601944	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1172318035		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	90	742	0	ENST00000355710.3:c.988C>T	p.Arg330Trp	p.R330W	ENST00000355710	NM_020975.4	330	Cgg/Tgg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44520605	44520605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	117	557	0	ENST00000291552.4:c.157C>T	p.Arg53Cys	p.R53C	ENST00000291552	NM_006758.2	53	Cgt/Tgt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245133	53245133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	66	785	0	ENST00000375401.3:c.807del	p.Thr270GlnfsTer2	p.T270Qfs*2	ENST00000375401	NM_004187.3	269	ccC/cc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753452	42753452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	152	846	0	ENST00000222329.4:c.812C>T	p.Thr271Met	p.T271M	ENST00000222329	NM_006494.2	271	aCg/aTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412634	63412634	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753930754		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	51	667	0	ENST00000330258.3:c.533G>A	p.Arg178His	p.R178H	ENST00000330258	NM_152424.3	178	cGt/cAt																																																																															
TET1	80312	MSKCC	GRCh37	10	70332760	70332760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	33	572	0	ENST00000373644.4:c.665G>A	p.Arg222His	p.R222H	ENST00000373644	NM_030625.2	222	cGc/cAc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131976422	131976422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	75	687	0	ENST00000265335.6:c.3677G>A	p.Gly1226Asp	p.G1226D	ENST00000265335		1226	gGc/gAc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919865	50919866	+	splice_acceptor_variant	Splice_Site	INS	-	-	G	rs756872503		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	106	695	3	ENST00000440232.2:c.2959dup		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49431115	49431115	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371869550		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	54	892	0	ENST00000301067.7:c.10024C>T	p.Arg3342Cys	p.R3342C	ENST00000301067	NM_003482.3	3342	Cgc/Tgc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294087	1294087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750129321		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	124	857	0	ENST00000310581.5:c.914C>T	p.Ala305Val	p.A305V	ENST00000310581	NM_198253.2	305	gCg/gTg																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64290026	64290026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	84	519	1	ENST00000370651.3:c.469C>T	p.Arg157Trp	p.R157W	ENST00000370651	NM_003463.4	157	Cgg/Tgg																																																																															
REL	5966	MSKCC	GRCh37	2	61149309	61149309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	75	638	0	ENST00000295025.8:c.1499C>T	p.Thr500Ile	p.T500I	ENST00000295025	NM_002908.2	500	aCa/aTa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527913	157527913	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs551038862		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	38	706	0	ENST00000346085.5:c.5638G>A	p.Val1880Ile	p.V1880I	ENST00000346085	NM_020732.3	1880	Gtc/Atc																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61197623	61197623	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867394650		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	94	489	0	ENST00000301761.2:c.5C>T	p.Ala2Val	p.A2V	ENST00000301761	NM_017841.2	2	gCg/gTg																																																																															
GAB1	2549	MSKCC	GRCh37	4	144359460	144359460	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	79	687	0	ENST00000262994.4:c.902G>T	p.Arg301Met	p.R301M	ENST00000262994	NM_002039.3	301	aGg/aTg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117730747	117730747	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	75	476	0	ENST00000368508.3:c.287T>C	p.Leu96Pro	p.L96P	ENST00000368508	NM_002944.2	96	cTg/cCg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39542468	39542468	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	48	470	0	ENST00000262039.4:c.272T>C	p.Leu91Pro	p.L91P	ENST00000262039	NM_002647.2	91	cTg/cCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438013	49438013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	121	826	0	ENST00000301067.7:c.5158G>T	p.Val1720Leu	p.V1720L	ENST00000301067	NM_003482.3	1720	Gtg/Ttg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193181552	193181552	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1314797741		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	72	545	0	ENST00000367435.3:c.1099G>A	p.Ala367Thr	p.A367T	ENST00000367435	NM_024529.4	367	Gct/Act																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292403	15292403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	21	653	0	ENST00000263388.2:c.2776C>T	p.Pro926Ser	p.P926S	ENST00000263388	NM_000435.2	926	Ccc/Tcc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644468	21644468	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754016839		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	205	626	0	ENST00000421138.2:c.199G>A	p.Ala67Thr	p.A67T	ENST00000421138		67	Gct/Act																																																																															
E2F3	1871	MSKCC	GRCh37	6	20480183	20480184	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	60	507	0	ENST00000346618.3:c.505dup	p.Thr169AsnfsTer12	p.T169Nfs*12	ENST00000346618	NM_001949.4	167	cca/ccAa																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202123	67202123	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs569000234		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	98	669	0	ENST00000312629.5:c.1226G>A	p.Arg409His	p.R409H	ENST00000312629	NM_003952.2	409	cGc/cAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251739	212251739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	79	701	1	ENST00000342788.4:c.3320G>A	p.Cys1107Tyr	p.C1107Y	ENST00000342788	NM_005235.2	1107	tGt/tAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285167	212285167	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	45	531	0	ENST00000342788.4:c.3134G>T	p.Arg1045Met	p.R1045M	ENST00000342788	NM_005235.2	1045	aGg/aTg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39224555	39224555	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	79	470	0	ENST00000402219.2:c.2803A>G	p.Thr935Ala	p.T935A	ENST00000402219	NM_005633.3	935	Act/Gct																																																																															
MSI1	4440	MSKCC	GRCh37	12	120789165	120789166	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	252	592	0	ENST00000257552.2:c.771dup	p.Val258SerfsTer121	p.V258Sfs*121	ENST00000257552	NM_002442.3	257	-/A																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230492718	230492718	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	93	732	0	ENST00000525115.1:c.474del	p.His158GlnfsTer33	p.H158Qfs*33	ENST00000525115		158	caC/ca																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78425908	78425908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	78	746	0	ENST00000370768.2:c.1537G>A	p.Ala513Thr	p.A513T	ENST00000370768	NM_003902.3	513	Gca/Aca																																																																															
NF1	4763	MSKCC	GRCh37	17	29679402	29679402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	100	486	0	ENST00000358273.4:c.7585C>T	p.Pro2529Ser	p.P2529S	ENST00000358273	NM_001042492.2	2529	Cct/Tct																																																																															
ALB	213	MSKCC	GRCh37	4	74276126	74276126	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs1359715511		P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	73	467	0	ENST00000295897.4:c.713G>T	p.Trp238Leu	p.W238L	ENST00000295897	NM_000477.5	238	tGg/tTg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740448	58740448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	74	600	0	ENST00000305921.3:c.1353G>T	p.Glu451Asp	p.E451D	ENST00000305921	NM_003620.3	451	gaG/gaT																																																																															
MET	4233	MSKCC	GRCh37	7	116398621	116398621	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	70	541	0	ENST00000397752.3:c.2211T>A	p.Ser737Arg	p.S737R	ENST00000397752	NM_000245.2	737	agT/agA																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223704	36223704	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	159	897	0	ENST00000222270.7:c.6254C>A	p.Pro2085His	p.P2085H	ENST00000222270	NM_014727.1	2085	cCt/cAt																																																																															
CDK4	1019	MSKCC	GRCh37	12	58143042	58143042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	93	733	0	ENST00000257904.6:c.742G>A	p.Ala248Thr	p.A248T	ENST00000257904	NM_000075.3	248	Gcc/Acc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78426109	78426111	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	59	680	0	ENST00000370768.2:c.1414_1416del	p.Pro472del	p.P472del	ENST00000370768	NM_003902.3	472	CCT/-																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229686	98229687	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	88	532	0	ENST00000331920.6:c.2271dup	p.Leu758SerfsTer32	p.L758Sfs*32	ENST00000331920	NM_000264.3	757	-/T																																																																															
PMS1	5378	MSKCC	GRCh37	2	190718810	190718810	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0068685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	49	438	0	ENST00000441310.2:c.966+2T>C		p.X322_splice	ENST00000441310	NM_000534.4	322																																																																																
TP53	7157	MSKCC	GRCh37	17	7576888	7576888	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0068714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	217	493	0	ENST00000269305.4:c.958A>T	p.Lys320Ter	p.K320*	ENST00000269305	NM_001126112.2	320	Aag/Tag																																																																															
CDH1	999	MSKCC	GRCh37	16	68856020	68856020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	281	367	0	ENST00000261769.5:c.1828C>T	p.Gln610Ter	p.Q610*	ENST00000261769	NM_004360.3	610	Cag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881426	37881426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	117	468	0	ENST00000269571.5:c.2618A>G	p.Asp873Gly	p.D873G	ENST00000269571		873	gAc/gGc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23649173	23649173	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0068714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	524	324	0	ENST00000261584.4:c.209C>T	p.Ser70Leu	p.S70L	ENST00000261584	NM_024675.3	70	tCa/tTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432348	49432348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	80	486	0	ENST00000301067.7:c.8791C>T	p.Pro2931Ser	p.P2931S	ENST00000301067	NM_003482.3	2931	Cca/Tca																																																																															
MGA	23269	MSKCC	GRCh37	15	42058778	42058778	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs867346365		P-0068714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	43	406	0	ENST00000219905.7:c.8498T>G	p.Leu2833Arg	p.L2833R	ENST00000219905	NM_001164273.1	2833	cTt/cGt																																																																															
CBFB	865	MSKCC	GRCh37	16	67070623	67070623	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	210	401	0	ENST00000412916.2:c.247C>T	p.Arg83Ter	p.R83*	ENST00000412916		83	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0068719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	113	326	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	89	342	0	ENST00000250448.2:c.781C>T	p.Arg261Cys	p.R261C	ENST00000250448	NM_004496.3	261	Cgc/Tgc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061178	38061178	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	110	347	0	ENST00000250448.2:c.811C>T	p.Gln271Ter	p.Q271*	ENST00000250448	NM_004496.3	271	Cag/Tag																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285577	38285577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	53	371	2	ENST00000425967.3:c.576G>A	p.Met192Ile	p.M192I	ENST00000425967	NM_001174067.1	192	atG/atA																																																																															
ABL1	25	MSKCC	GRCh37	9	133759620	133759620	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	100	368	0	ENST00000318560.5:c.1943T>C	p.Phe648Ser	p.F648S	ENST00000318560	NM_005157.4	648	tTc/tCc																																																																															
MED12	9968	MSKCC	GRCh37	X	70341229	70341229	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	57	228	0	ENST00000374080.3:c.788A>T	p.Glu263Val	p.E263V	ENST00000374080		263	gAg/gTg																																																																															
AR	367	MSKCC	GRCh37	X	66943544	66943552	+	missense_variant	Missense_Mutation	ONP	ATCAGTTCA	ATCAGTTCA	TAATCAAGT			P-0068750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	20	199	0	ENST00000374690.3:c.2624_2632delinsTAATCAAGT	p.His875_Thr878delinsLeuIleLysSer	p.H875_T878delinsLIKS	ENST00000374690	NM_000044.3	875	cATCAGTTCAct/cTAATCAAGTct																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0068754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	165	292	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
SRC	6714	MSKCC	GRCh37	20	36012660	36012660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	119	388	0	ENST00000358208.4:c.104C>T	p.Ser35Leu	p.S35L	ENST00000358208		35	tCg/tTg																																																																															
JUN	3725	MSKCC	GRCh37	1	59248633	59248634	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0068754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	143	418	0	ENST00000371222.2:c.109_110del	p.Ser37HisfsTer69	p.S37Hfs*69	ENST00000371222	NM_002228.3	37	AGc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-	rs587780067		P-0068754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	239	424	0	ENST00000269305.4:c.365_366del	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944267	81944267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	113	379	0	ENST00000359376.3:c.1876G>A	p.Glu626Lys	p.E626K	ENST00000359376	NM_002661.3	626	Gag/Aag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640115	3640115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	83	398	0	ENST00000294008.3:c.3524C>T	p.Pro1175Leu	p.P1175L	ENST00000294008	NM_032444.2	1175	cCt/cTt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63531762	63531762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	118	325	0	ENST00000307078.5:c.2219C>T	p.Pro740Leu	p.P740L	ENST00000307078	NM_004655.3	740	cCa/cTa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627927	37627928	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0068769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	216	500	0	ENST00000447079.4:c.1843_1844del	p.Val615AsnfsTer25	p.V615Nfs*25	ENST00000447079	NM_015083.1	614	tcTGta/tcta																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650819	37650831	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAGGGCTTCCC	AAGAGGGCTTCCC	-			P-0068769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	50	414	0	ENST00000447079.4:c.2293_2305del	p.Glu765SerfsTer13	p.E765Sfs*13	ENST00000447079	NM_015083.1	764	aAAGAGGGCTTCCCa/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0068770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	81	219	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51436089	51436089	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141609461		P-0068770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			711	53	415	0	ENST00000262662.1:c.49G>A	p.Asp17Asn	p.D17N	ENST00000262662		17	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0068771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	219	454	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71102904	71102904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	63	306	0	ENST00000318789.4:c.303G>A	p.Met101Ile	p.M101I	ENST00000318789	NM_032682.5	101	atG/atA																																																																															
NF2	4771	MSKCC	GRCh37	22	30077510	30077510	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	44	398	0	ENST00000338641.4:c.1657G>T	p.Glu553Ter	p.E553*	ENST00000338641	NM_000268.3	553	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427225	49427225	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs587783681		P-0068771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			753	68	437	0	ENST00000301067.7:c.11263C>T	p.Gln3755Ter	p.Q3755*	ENST00000301067	NM_003482.3	3755	Cag/Tag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857332	9857332	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs763809945		P-0068771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	39	386	0	ENST00000330684.3:c.4069C>G	p.Leu1357Val	p.L1357V	ENST00000330684	NM_001134407.1	1357	Ctc/Gtc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252865	36252868	+	frameshift_variant	Frame_Shift_Del	DEL	CGAC	CGAC	-			P-0068771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	120	316	0	ENST00000300305.3:c.494_497del	p.Gly165GlufsTer10	p.G165Efs*10	ENST00000300305		165	gGTCGa/ga																																																																															
WT1	7490	MSKCC	GRCh37	11	32449559	32449559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	55	359	0	ENST00000332351.3:c.815C>G	p.Thr272Ser	p.T272S	ENST00000332351	NM_024426.4	272	aCc/aGc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680908	30680908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			774	53	368	0	ENST00000376406.3:c.811G>A	p.Asp271Asn	p.D271N	ENST00000376406	NM_014641.2	271	Gat/Aat																																																																															
CIC	23152	MSKCC	GRCh37	19	42799011	42799011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	78	415	0	ENST00000575354.2:c.4495G>A	p.Asp1499Asn	p.D1499N	ENST00000575354	NM_015125.3	1499	Gac/Aac																																																																															
REST	5978	MSKCC	GRCh37	4	57796292	57796292	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0068771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	37	348	0	ENST00000309042.7:c.1268C>G	p.Ser423Ter	p.S423*	ENST00000309042	NM_005612.4	423	tCa/tGa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874388	151874388	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	96	355	0	ENST00000262189.6:c.8150T>C	p.Leu2717Pro	p.L2717P	ENST00000262189	NM_170606.2	2717	cTt/cCt																																																																															
MPL	4352	MSKCC	GRCh37	1	43814517	43814517	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	27	308	0	ENST00000372470.3:c.1312C>G	p.Leu438Val	p.L438V	ENST00000372470	NM_005373.2	438	Ctg/Gtg																																																																															
BTK	695	MSKCC	GRCh37	X	100615574	100615574	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	58	356	0	ENST00000308731.7:c.758G>C	p.Arg253Thr	p.R253T	ENST00000308731	NM_000061.2	253	aGa/aCa																																																																															
KDR	3791	MSKCC	GRCh37	4	55946179	55946179	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	129	362	0	ENST00000263923.4:c.4000G>C	p.Val1334Leu	p.V1334L	ENST00000263923	NM_002253.2	1334	Gtg/Ctg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198273284	198273284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	54	296	0	ENST00000335508.6:c.926G>C	p.Gly309Ala	p.G309A	ENST00000335508	NM_012433.2	309	gGa/gCa																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091186	29091186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	10	114	0	ENST00000328354.6:c.1304C>T	p.Ser435Leu	p.S435L	ENST00000328354	NM_007194.3	435	tCa/tTa																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170011231	170011231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068771-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	53	292	0	ENST00000295797.4:c.1352C>T	p.Ser451Phe	p.S451F	ENST00000295797	NM_002740.5	451	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0068773-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	28	435	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0068773-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	48	445	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	49	424	0	ENST00000358664.4:c.179G>T	p.Arg60Leu	p.R60L	ENST00000358664	NM_002382.4	60	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0068774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	53	307	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NUF2	83540	MSKCC	GRCh37	1	163317577	163317577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	54	361	0	ENST00000271452.3:c.973G>A	p.Glu325Lys	p.E325K	ENST00000271452	NM_145697.2	325	Gag/Aag																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149452863	149452863	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0068774-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	77	428	0	ENST00000286301.3:c.1082+1G>T		p.X361_splice	ENST00000286301	NM_005211.3	361																																																																																
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0068779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	121	240	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473616	67473616	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	178	262	0	ENST00000327367.4:c.696G>T	p.Trp232Cys	p.W232C	ENST00000327367	NM_005902.3	232	tgG/tgT																																																																															
TP53	7157	MSKCC	GRCh37	17	7579563	7579566	+	frameshift_variant	Frame_Shift_Del	DEL	CATC	CATC	-			P-0068779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	101	235	0	ENST00000269305.4:c.121_124del	p.Asp41IlefsTer2	p.D41Ifs*2	ENST00000269305	NM_001126112.2	41	GATGat/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0068779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	91	166	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959066	2959066	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772566311		P-0068779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	203	235	0	ENST00000396946.4:c.2450C>T	p.Ala817Val	p.A817V	ENST00000396946	NM_032415.4	817	gCg/gTg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279904	18279904	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768641921		P-0068779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	216	231	0	ENST00000222254.8:c.1987G>A	p.Gly663Ser	p.G663S	ENST00000222254	NM_005027.3	663	Ggc/Agc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245427	153245427	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	55	191	0	ENST00000281708.4:c.1764del	p.Glu588AspfsTer40	p.E588Dfs*40	ENST00000281708	NM_033632.3	588	gaA/ga																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450287	50450287	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	108	245	0	ENST00000331340.3:c.471G>T	p.Lys157Asn	p.K157N	ENST00000331340	NM_006060.4	157	aaG/aaT																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0068785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	14	334	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0068785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	119	394	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577526	7577526	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121912653		P-0068785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	54	288	0	ENST00000269305.4:c.755T>C	p.Leu252Pro	p.L252P	ENST00000269305	NM_001126112.2	252	cTc/cCc																																																																															
PGR	5241	MSKCC	GRCh37	11	100962530	100962530	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752817186		P-0068785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	39	298	0	ENST00000325455.5:c.1867C>T	p.Arg623Cys	p.R623C	ENST00000325455	NM_001202474.3	623	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112174117	112174117	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	92	343	0	ENST00000257430.4:c.2827del	p.Ser943GlnfsTer12	p.S943Qfs*12	ENST00000257430	NM_000038.5	942	aaT/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0068785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	68	258	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112137048	112137048	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	37	249	0	ENST00000257430.4:c.802G>T	p.Glu268Ter	p.E268*	ENST00000257430	NM_000038.5	268	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0068787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	66	351	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374905	45374905	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	72	348	0	ENST00000262160.6:c.938T>C	p.Leu313Ser	p.L313S	ENST00000262160	NM_005901.5	313	tTa/tCa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117614	70117614	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	71	414	0	ENST00000245479.2:c.82G>T	p.Glu28Ter	p.E28*	ENST00000245479	NM_000346.3	28	Gag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119692	70119692	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	62	345	1	ENST00000245479.2:c.694C>T	p.Gln232Ter	p.Q232*	ENST00000245479	NM_000346.3	232	Cag/Tag																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368268	45368268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	61	329	0	ENST00000262160.6:c.1334C>T	p.Pro445Leu	p.P445L	ENST00000262160	NM_005901.5	445	cCt/cTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280815	41280815	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	29	336	0	ENST00000349496.5:c.2328G>A	p.Trp776Ter	p.W776*	ENST00000349496	NM_001904.3	776	tgG/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0068787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	92	260	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40727128	40727128	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068787-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	60	312	0	ENST00000373198.4:c.3836T>A	p.Phe1279Tyr	p.F1279Y	ENST00000373198	NM_133170.3	1279	tTc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579378	7579378	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	81	479	0	ENST00000269305.4:c.309C>A	p.Tyr103Ter	p.Y103*	ENST00000269305	NM_001126112.2	103	taC/taA																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485837	57485837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	73	443	0	ENST00000371085.3:c.1138C>T	p.Arg380Cys	p.R380C	ENST00000371085	NM_000516.4	380	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0068788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	57	255	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
HGF	3082	MSKCC	GRCh37	7	81334836	81334836	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770723689		P-0068788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	61	346	0	ENST00000222390.5:c.1880G>A	p.Gly627Asp	p.G627D	ENST00000222390	NM_000601.4	627	gGc/gAc																																																																															
SDHC	6391	MSKCC	GRCh37	1	161332160	161332160	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0068788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	42	161	0	ENST00000367975.2:c.447C>G	p.Tyr149Ter	p.Y149*	ENST00000367975	NM_003001.3	149	taC/taG																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729914	30729915	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	150	335	0	ENST00000359013.4:c.1513dup	p.Glu505GlyfsTer36	p.E505Gfs*36	ENST00000359013	NM_001024847.2	504	cgg/cGgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0068548-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	194	260	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0068548-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	198	433	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
RET	5979	MSKCC	GRCh37	10	43596038	43596038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068548-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	115	355	0	ENST00000355710.3:c.205G>T	p.Gly69Cys	p.G69C	ENST00000355710	NM_020975.4	69	Ggc/Tgc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857788	9857788	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068548-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			831	159	431	0	ENST00000330684.3:c.3613G>T	p.Glu1205Ter	p.E1205*	ENST00000330684	NM_001134407.1	1205	Gag/Tag																																																																															
AKT2	208	MSKCC	GRCh37	19	40745987	40745987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068548-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	134	337	0	ENST00000392038.2:c.604C>T	p.Arg202Trp	p.R202W	ENST00000392038	NM_001626.4	202	Cgg/Tgg																																																																															
ALB	213	MSKCC	GRCh37	4	74283373	74283373	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068548-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	69	255	0	ENST00000295897.4:c.1415G>T	p.Cys472Phe	p.C472F	ENST00000295897	NM_000477.5	472	tGt/tTt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100258	157100258	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068548-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	45	216	0	ENST00000346085.5:c.1195G>T	p.Ala399Ser	p.A399S	ENST00000346085	NM_020732.3	399	Gcg/Tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0068550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	89	468	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0068550-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	66	329	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259759	16259759	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	196	541	0	ENST00000375759.3:c.7024C>T	p.Arg2342Ter	p.R2342*	ENST00000375759	NM_015001.2	2342	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101611	27101612	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	88	489	0	ENST00000324856.7:c.4899dup	p.Met1634HisfsTer14	p.M1634Hfs*14	ENST00000324856	NM_006015.4	1631	-/C																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231483640	231483640	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766305995		P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	98	376	1	ENST00000295050.7:c.419G>A	p.Arg140His	p.R140H	ENST00000295050	NM_032018.5	140	cGc/cAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118371743	118371743	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782768278		P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	145	356	0	ENST00000534358.1:c.6200G>A	p.Arg2067His	p.R2067H	ENST00000534358	NM_005933.3	2067	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	81	464	1	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748660	43748661	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	140	488	0	ENST00000382044.4:c.2145dup	p.Glu716ArgfsTer9	p.E716Rfs*9	ENST00000382044	NM_001141980.1	715	-/A																																																																															
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1023835002		P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	125	433	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	149	461	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99442774	99442774	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771834417		P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	138	420	0	ENST00000268035.6:c.1171C>T	p.Arg391Cys	p.R391C	ENST00000268035	NM_000875.3	391	Cgc/Tgc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779211	3779211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783507		P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	29	353	2	ENST00000262367.5:c.5837del	p.Pro1946HisfsTer30	p.P1946Hfs*30	ENST00000262367	NM_004380.2	1946	cCa/ca																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923375	9923375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	125	417	0	ENST00000330684.3:c.1912G>A	p.Ala638Thr	p.A638T	ENST00000330684	NM_001134407.1	638	Gct/Act																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	35	395	1	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33680061	33680061	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201406101		P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	55	276	0	ENST00000308377.4:c.2020C>T	p.Arg674Cys	p.R674C	ENST00000308377	NM_152270.3	674	Cgt/Tgt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120447	70120448	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	151	467	1	ENST00000245479.2:c.1451_1452del	p.Ser484TrpfsTer93	p.S484Wfs*93	ENST00000245479	NM_000346.3	483	acCTct/acct																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289953	15289953	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772172068		P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	37	502	0	ENST00000263388.2:c.3601C>T	p.Arg1201Cys	p.R1201C	ENST00000263388	NM_000435.2	1201	Cgc/Tgc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18276988	18276988	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	70	438	0	ENST00000222254.8:c.1435A>G	p.Thr479Ala	p.T479A	ENST00000222254	NM_005027.3	479	Act/Gct																																																																															
CCNE1	898	MSKCC	GRCh37	19	30314638	30314638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	163	425	0	ENST00000262643.3:c.1187C>T	p.Pro396Leu	p.P396L	ENST00000262643	NM_001238.2	396	cCg/cTg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213242	39213243	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	144	517	0	ENST00000402219.2:c.3724dup	p.Ser1242LysfsTer2	p.S1242Kfs*2	ENST00000402219	NM_005633.3	1242	agt/aAgt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171593	36171596	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CTTA	CTTA	-			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	91	359	0	ENST00000300305.3:c.967+2_967+5del		p.X323_splice	ENST00000300305		323																																																																																
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs919467999		P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	188	497	0	ENST00000288319.7:c.1211C>T	p.Pro404Leu	p.P404L	ENST00000288319	NM_182918.3	404	cCg/cTg																																																																															
VHL	7428	MSKCC	GRCh37	3	10183848	10183848	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1446876735		P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	112	331	0	ENST00000256474.2:c.317G>A	p.Gly106Asp	p.G106D	ENST00000256474	NM_000551.3	106	gGc/gAc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	259	428	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52584510	52584511	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	168	441	0	ENST00000394830.3:c.4502_4503del	p.Glu1501GlyfsTer7	p.E1501Gfs*7	ENST00000394830	NM_018313.4	1501	gAG/g																																																																															
TERT	7015	MSKCC	GRCh37	5	1294576	1294576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	141	432	0	ENST00000310581.5:c.425G>A	p.Arg142His	p.R142H	ENST00000310581	NM_198253.2	142	cGc/cAc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	94	332	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	58	324	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175022	112175022	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	42	414	0	ENST00000257430.4:c.3734del	p.Lys1245ArgfsTer20	p.K1245Rfs*20	ENST00000257430	NM_000038.5	1244	cAa/ca																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	139	516	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675170	30675172	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs1472156046		P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	71	473	0	ENST00000376406.3:c.3073_3075del	p.Lys1025del	p.K1025del	ENST00000376406	NM_014641.2	1025	AAG/-																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129329	152129329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	139	359	1	ENST00000206249.3:c.287del	p.Gly96ValfsTer13	p.G96Vfs*13	ENST00000206249	NM_000125.3	94	ctG/ct																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959063	2959063	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41497250		P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	128	428	0	ENST00000396946.4:c.2453G>A	p.Arg818Gln	p.R818Q	ENST00000396946	NM_032415.4	818	cGg/cAg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	142	406	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	72	316	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187222	38187222	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	84	404	0	ENST00000317025.8:c.1255del	p.Thr419ProfsTer8	p.T419Pfs*8	ENST00000317025	NM_023034.1	419	Acc/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209504	98209504	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766315655		P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	25	424	0	ENST00000331920.6:c.4034G>A	p.Arg1345His	p.R1345H	ENST00000331920	NM_000264.3	1345	cGt/cAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409816	139409816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	64	392	1	ENST00000277541.6:c.1940G>A	p.Ser647Asn	p.S647N	ENST00000277541	NM_017617.3	647	aGc/aAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923087	39923087	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	215	387	1	ENST00000378444.4:c.3621del	p.Lys1207AsnfsTer31	p.K1207Nfs*31	ENST00000378444	NM_001123385.1	1207	aaA/aa																																																																															
ARAF	369	MSKCC	GRCh37	X	47426420	47426420	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	63	595	0	ENST00000377045.4:c.763C>G	p.Arg255Gly	p.R255G	ENST00000377045	NM_001654.4	255	Cgg/Ggg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411281	63411281	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	61	492	0	ENST00000330258.3:c.1886A>G	p.Gln629Arg	p.Q629R	ENST00000330258	NM_152424.3	629	cAg/cGg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11300414	11300414	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760445750		P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	56	403	0	ENST00000361445.4:c.1732G>A	p.Asp578Asn	p.D578N	ENST00000361445	NM_004958.3	578	Gat/Aat																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259514	16259514	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	91	442	0	ENST00000375759.3:c.6779A>C	p.Glu2260Ala	p.E2260A	ENST00000375759	NM_015001.2	2260	gAg/gCg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056256	27056256	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	64	468	0	ENST00000324856.7:c.1252C>A	p.Pro418Thr	p.P418T	ENST00000324856	NM_006015.4	418	Cca/Aca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087898	27087898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	74	398	0	ENST00000324856.7:c.2187del	p.Ser730ValfsTer12	p.S730Vfs*12	ENST00000324856	NM_006015.4	729	Ccc/cc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932893	36932893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	146	430	1	ENST00000361632.4:c.1978C>T	p.Pro660Ser	p.P660S	ENST00000361632		660	Cca/Tca																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78435653	78435653	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	39	284	0	ENST00000370768.2:c.167A>C	p.Asn56Thr	p.N56T	ENST00000370768	NM_003902.3	56	aAt/aCt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193218982	193218982	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	13	353	0	ENST00000367435.3:c.1543del	p.Trp515GlyfsTer9	p.W515Gfs*9	ENST00000367435	NM_024529.4	514	Ttt/tt																																																																															
RET	5979	MSKCC	GRCh37	10	43597861	43597861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	70	502	0	ENST00000355710.3:c.409T>C	p.Cys137Arg	p.C137R	ENST00000355710	NM_020975.4	137	Tgc/Cgc																																																																															
TET1	80312	MSKCC	GRCh37	10	70451302	70451302	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	89	494	0	ENST00000373644.4:c.6142T>C	p.Phe2048Leu	p.F2048L	ENST00000373644	NM_030625.2	2048	Ttt/Ctt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495487	56495487	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	107	530	0	ENST00000267101.3:c.3677A>G	p.Asp1226Gly	p.D1226G	ENST00000267101	NM_001982.3	1226	gAt/gGt																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145103	58145103	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	90	446	1	ENST00000257904.6:c.241T>C	p.Ser81Pro	p.S81P	ENST00000257904	NM_000075.3	81	Tcc/Ccc																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233091	69233091	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	63	410	0	ENST00000462284.1:c.956C>A	p.Pro319His	p.P319H	ENST00000462284	NM_002392.5	319	cCc/cAc																																																																															
RB1	5925	MSKCC	GRCh37	13	49037928	49037928	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	42	258	0	ENST00000267163.4:c.2168T>C	p.Ile723Thr	p.I723T	ENST00000267163	NM_000321.2	723	aTc/aCc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987085	36987085	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	108	353	0	ENST00000354822.5:c.604C>T	p.Gln202Ter	p.Q202*	ENST00000354822	NM_001079668.2	202	Cag/Tag																																																																															
USP8	9101	MSKCC	GRCh37	15	50754496	50754496	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	27	245	0	ENST00000307179.4:c.522del	p.Lys174AsnfsTer18	p.K174Nfs*18	ENST00000307179		173	gAa/ga																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633255	3633255	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	153	470	1	ENST00000294008.3:c.4996del	p.Arg1666AspfsTer49	p.R1666Dfs*49	ENST00000294008	NM_032444.2	1666	Cga/ga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786709	3786709	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	101	383	0	ENST00000262367.5:c.4502A>G	p.Glu1501Gly	p.E1501G	ENST00000262367	NM_004380.2	1501	gAg/gGg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819310	3819310	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	74	424	0	ENST00000262367.5:c.2925del	p.Ser976ProfsTer22	p.S976Pfs*22	ENST00000262367	NM_004380.2	975	ccC/cc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50818299	50818299	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	34	402	0	ENST00000398568.2:c.1877A>T	p.Asp626Val	p.D626V	ENST00000398568	NM_001042412.1	626	gAt/gTt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11924258	11924258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	35	492	0	ENST00000353533.5:c.55G>A	p.Gly19Ser	p.G19S	ENST00000353533	NM_003010.3	19	Ggc/Agc																																																																															
NF1	4763	MSKCC	GRCh37	17	29701046	29701046	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	81	386	0	ENST00000358273.4:c.8393A>G	p.Asn2798Ser	p.N2798S	ENST00000358273	NM_001042492.2	2798	aAc/aGc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220321	5220321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	68	385	0	ENST00000357368.4:c.3499G>A	p.Gly1167Ser	p.G1167S	ENST00000357368	NM_002850.3	1167	Ggc/Agc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097200	11097205	+	inframe_deletion	In_Frame_Del	DEL	GGCCCT	GGCCCT	-	rs1446668880		P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	58	396	0	ENST00000344626.4:c.708_713del	p.Gly243_Pro244del	p.G243_P244del	ENST00000344626	NM_003072.3	231	GGCCCT/-																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15297945	15297945	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	86	452	0	ENST00000263388.2:c.1811A>G	p.Tyr604Cys	p.Y604C	ENST00000263388	NM_000435.2	604	tAc/tGc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919018	50919018	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	112	358	0	ENST00000440232.2:c.2755G>T	p.Gly919Cys	p.G919C	ENST00000440232	NM_002691.3	919	Ggc/Tgc																																																																															
ALK	238	MSKCC	GRCh37	2	29446362	29446362	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	69	495	0	ENST00000389048.3:c.3205A>G	p.Met1069Val	p.M1069V	ENST00000389048	NM_004304.4	1069	Atg/Gtg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61725890	61725890	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	36	371	0	ENST00000401558.2:c.677T>C	p.Leu226Ser	p.L226S	ENST00000401558	NM_003400.3	226	tTg/tCg																																																																															
CASP8	841	MSKCC	GRCh37	2	202137500	202137500	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	145	497	0	ENST00000358485.4:c.727+1G>A		p.X243_splice	ENST00000358485	NM_001080125.1	243																																																																																
CUL3	8452	MSKCC	GRCh37	2	225346674	225346674	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	89	341	0	ENST00000264414.4:c.1964A>G	p.Asn655Ser	p.N655S	ENST00000264414	NM_003590.4	655	aAt/aGt																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62319662	62319662	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs1408202470		P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	128	452	0	ENST00000482936.1:c.1645G>A	p.Ala549Thr	p.A549T	ENST00000482936		549	Gcc/Acc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437717	52437717	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	36	426	0	ENST00000460680.1:c.1444T>A	p.Ser482Thr	p.S482T	ENST00000460680	NM_004656.3	482	Tcg/Acg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52443728	52443728	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	96	460	0	ENST00000460680.1:c.67+2T>C		p.X23_splice	ENST00000460680	NM_004656.3	23																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89391210	89391210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	49	383	0	ENST00000336596.2:c.1276G>A	p.Ala426Thr	p.A426T	ENST00000336596	NM_005233.5	426	Gct/Act																																																																															
ATR	545	MSKCC	GRCh37	3	142285080	142285080	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	55	369	0	ENST00000350721.4:c.175A>G	p.Thr59Ala	p.T59A	ENST00000350721	NM_001184.3	59	Act/Gct																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430716	181430716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	212	519	0	ENST00000325404.1:c.568G>A	p.Gly190Ser	p.G190S	ENST00000325404	NM_003106.3	190	Ggc/Agc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801502	1801503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	119	398	0	ENST00000260795.2:c.412dup	p.Glu138GlyfsTer5	p.E138Gfs*5	ENST00000260795		136	-/G																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957494	1957494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	142	369	0	ENST00000382895.3:c.2593G>A	p.Gly865Ser	p.G865S	ENST00000382895	NM_133330.2	865	Ggc/Agc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749393	41749393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	18	289	0	ENST00000226382.2:c.402G>T	p.Lys134Asn	p.K134N	ENST00000226382	NM_003924.3	134	aaG/aaT																																																																															
KDR	3791	MSKCC	GRCh37	4	55968565	55968565	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	27	341	0	ENST00000263923.4:c.2098T>C	p.Trp700Arg	p.W700R	ENST00000263923	NM_002253.2	700	Tgg/Cgg																																																																															
REST	5978	MSKCC	GRCh37	4	57777042	57777042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	57	409	0	ENST00000309042.7:c.238G>A	p.Gly80Arg	p.G80R	ENST00000309042	NM_005612.4	80	Ggg/Agg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541745	187541745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	160	468	0	ENST00000441802.2:c.5995G>A	p.Ala1999Thr	p.A1999T	ENST00000441802	NM_005245.3	1999	Gct/Act																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630179	187630179	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	81	475	0	ENST00000441802.2:c.803A>G	p.Asp268Gly	p.D268G	ENST00000441802	NM_005245.3	268	gAc/gGc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149509371	149509371	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	74	443	0	ENST00000261799.4:c.1528C>A	p.Leu510Met	p.L510M	ENST00000261799	NM_002609.3	510	Ctg/Atg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680892	30680892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	98	530	0	ENST00000376406.3:c.827G>T	p.Arg276Met	p.R276M	ENST00000376406	NM_014641.2	276	aGg/aTg																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790615	89790615	+	start_lost	Translation_Start_Site	SNP	T	T	C	rs1274242000		P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	104	313	0	ENST00000336032.3:c.2T>C	p.Met1?	p.M1?	ENST00000336032	NM_006813.2	1	aTg/aCg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553264	106553265	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	61	494	0	ENST00000369096.4:c.1233dup	p.Lys412GlnfsTer12	p.K412Qfs*12	ENST00000369096	NM_001198.3	410	tac/taCc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021707	69021707	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	84	398	0	ENST00000288368.4:c.2995T>C	p.Ser999Pro	p.S999P	ENST00000288368	NM_024870.2	999	Tca/Cca																																																																															
PAX5	5079	MSKCC	GRCh37	9	37002714	37002714	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	31	398	0	ENST00000358127.4:c.535T>C	p.Tyr179His	p.Y179H	ENST00000358127	NM_001280556.1	179	Tac/Cac																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98212205	98212205	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	139	353	1	ENST00000331920.6:c.3467T>C	p.Leu1156Pro	p.L1156P	ENST00000331920	NM_000264.3	1156	cTg/cCg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135780983	135780983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	95	371	0	ENST00000298552.3:c.1982G>T	p.Ser661Ile	p.S661I	ENST00000298552	NM_001162426.1	661	aGc/aTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390727	139390727	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	95	508	0	ENST00000277541.6:c.7464del	p.His2488GlnfsTer101	p.H2488Qfs*101	ENST00000277541	NM_017617.3	2488	caC/ca																																																																															
STAG2	10735	MSKCC	GRCh37	X	123200239	123200239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	14	332	0	ENST00000218089.9:c.2218G>A	p.Val740Ile	p.V740I	ENST00000218089	NM_001042749.1	740	Gta/Ata																																																																															
PHF6	84295	MSKCC	GRCh37	X	133512056	133512056	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068551-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	20	247	0	ENST00000332070.3:c.160T>A	p.Ser54Thr	p.S54T	ENST00000332070	NM_032458.2	54	Tca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0068553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	85	492	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714670	52714670	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112759633		P-0068553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	75	525	0	ENST00000322088.6:c.428C>T	p.Ser143Phe	p.S143F	ENST00000322088	NM_014225.5	143	tCc/tTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044907	47044907	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	29	269	0	ENST00000329236.7:c.2003del	p.Gly668AlafsTer56	p.G668Afs*56	ENST00000329236	NM_001204466.1	667	Ggg/gg																																																																															
MET	4233	MSKCC	GRCh37	7	116411667	116411667	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	37	530	0	ENST00000397752.3:c.2846T>G	p.Leu949Arg	p.L949R	ENST00000397752	NM_000245.2	949	cTt/cGt																																																																															
TET2	54790	MSKCC	GRCh37	4	106157039	106157039	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs763505294		P-0068553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	87	548	0	ENST00000380013.4:c.1940T>C	p.Val647Ala	p.V647A	ENST00000380013	NM_001127208.2	647	gTg/gCg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987031	36987031	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	62	308	0	ENST00000354822.5:c.658G>T	p.Glu220Ter	p.E220*	ENST00000354822	NM_001079668.2	220	Gag/Tag																																																																															
ERF	2077	MSKCC	GRCh37	19	42753135	42753135	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	33	549	0	ENST00000222329.4:c.1129T>G	p.Phe377Val	p.F377V	ENST00000222329	NM_006494.2	377	Ttt/Gtt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670567	134670567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	85	504	0	ENST00000398015.3:c.478A>G	p.Thr160Ala	p.T160A	ENST00000398015	NM_004441.4	160	Aca/Gca																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366373	15366373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	38	367	0	ENST00000263377.2:c.1782G>T	p.Lys594Asn	p.K594N	ENST00000263377	NM_058243.2	594	aaG/aaT																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553533	106553533	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068553-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	22	437	0	ENST00000369096.4:c.1498G>T	p.Gly500Trp	p.G500W	ENST00000369096	NM_001198.3	500	Ggg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0068554-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	98	494	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603080	48603081	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0068554-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	50	396	0	ENST00000342988.3:c.1381_1382del	p.Gln461GlyfsTer32	p.Q461Gfs*32	ENST00000342988	NM_005359.5	461	CAg/g																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944167	71944167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068554-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	133	560	0	ENST00000298229.2:c.2000C>T	p.Ser667Phe	p.S667F	ENST00000298229	NM_001567.3	667	tCc/tTc																																																																															
MET	4233	MSKCC	GRCh37	7	116411884	116411905	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTTCTCTCTGTTTTAAGATC	TCTTTCTCTCTGTTTTAAGATC	-			P-0068554-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	113	555	0	ENST00000397752.3:c.2888-18_2891del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
BCOR	54880	MSKCC	GRCh37	X	39922258	39922258	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068554-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	39	414	0	ENST00000378444.4:c.3914A>C	p.Lys1305Thr	p.K1305T	ENST00000378444	NM_001123385.1	1305	aAg/aCg																																																																															
ATR	545	MSKCC	GRCh37	3	142234344	142234344	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068554-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	65	364	0	ENST00000350721.4:c.4396C>G	p.Gln1466Glu	p.Q1466E	ENST00000350721	NM_001184.3	1466	Cag/Gag																																																																															
ATR	545	MSKCC	GRCh37	3	142215954	142215954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068554-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	88	344	0	ENST00000350721.4:c.5639C>T	p.Ser1880Phe	p.S1880F	ENST00000350721	NM_001184.3	1880	tCt/tTt																																																																															
MYC	4609	MSKCC	GRCh37	8	128752745	128752745	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs139697494		P-0068632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	80	333	0	ENST00000377970.2:c.906C>A	p.His302Gln	p.H302Q	ENST00000377970	NM_002467.4	302	caC/caA																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830353	72830353	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	64	378	0	ENST00000268489.5:c.6228del	p.Ile2076MetfsTer25	p.I2076Mfs*25	ENST00000268489	NM_006885.3	2076	atT/at																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061221	38061232	+	inframe_deletion	In_Frame_Del	DEL	GTTCTCGAACAT	GTTCTCGAACAT	-			P-0068633-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	120	456	0	ENST00000250448.2:c.757_768del	p.Met253_Asn256del	p.M253_N256del	ENST00000250448	NM_004496.3	253	ATGTTCGAGAAC/-																																																																															
TCF3	6929	MSKCC	GRCh37	19	1632332	1632332	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0068633-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	62	375	1	ENST00000344749.5:c.218G>A	p.Arg73Gln	p.R73Q	ENST00000344749	NM_001136139.2	73	cGg/cAg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45854976	45854976	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068633-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	86	304	0	ENST00000391945.4:c.2194del	p.Asp732IlefsTer13	p.D732Ifs*13	ENST00000391945	NM_000400.3	732	Gat/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7576920	7576936	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCAGTGCTAGGAAAGA	GGCAGTGCTAGGAAAGA	-			P-0068634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	147	448	0	ENST00000269305.4:c.920-10_926del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
BRCA2	675	MSKCC	GRCh37	13	32914137	32914137	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs80358785		P-0068634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			57	74	278	0	ENST00000380152.3:c.5645C>A	p.Ser1882Ter	p.S1882*	ENST00000380152		1882	tCa/tAa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868259	56868284	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGAGTTGTTTATTTCCCTTACAGGGA	TGAGTTGTTTATTTCCCTTACAGGGA	-			P-0068634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	31	332	0	ENST00000308159.5:c.1665-19_1671del		p.X555_splice	ENST00000308159	NM_014669.4	555																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38061206	38061229	+	inframe_deletion	In_Frame_Del	DEL	GCGCAAGTAGCAGCCGTTCTCGAA	GCGCAAGTAGCAGCCGTTCTCGAA	-			P-0068634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	121	368	0	ENST00000250448.2:c.760_783del	p.Phe254_Arg261del	p.F254_R261del	ENST00000250448	NM_004496.3	254	TTCGAGAACGGCTGCTACTTGCGC/-																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627439	14627439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	117	301	0	ENST00000254322.2:c.631G>T	p.Gly211Trp	p.G211W	ENST00000254322	NM_006145.1	211	Ggg/Tgg																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84388692	84388711	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTGTAAAAAATTACCATTTC	CTGTAAAAAATTACCATTTC	-			P-0068634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	11	93	0	ENST00000321945.7:c.597-20_597-1del		p.X199_splice	ENST00000321945	NM_139076.2	199																																																																																
XPO1	7514	MSKCC	GRCh37	2	61760993	61760993	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769916613		P-0068634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	74	216	0	ENST00000401558.2:c.40C>T	p.Arg14Cys	p.R14C	ENST00000401558	NM_003400.3	14	Cgt/Tgt																																																																															
WT1	7490	MSKCC	GRCh37	11	32456581	32456581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	13	232	0	ENST00000332351.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000332351	NM_024426.4	104	cCg/cTg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922936	44922939	+	frameshift_variant	Frame_Shift_Del	DEL	AGGA	AGGA	-			P-0068634-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			54	141	173	0	ENST00000377967.4:c.1799_1802del	p.Gly600ValfsTer24	p.G600Vfs*24	ENST00000377967	NM_021140.2	599	acAGGA/ac																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2492097	2492097	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	114	374	0	ENST00000355716.4:c.500del	p.Pro167ArgfsTer23	p.P167Rfs*23	ENST00000355716	NM_003820.2	165	tgC/tg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260214	16260214	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	157	457	0	ENST00000375759.3:c.7484del	p.Pro2495LeufsTer4	p.P2495Lfs*4	ENST00000375759	NM_015001.2	2493	agC/ag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	139	439	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
JAK1	3716	MSKCC	GRCh37	1	65335141	65335141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	117	325	0	ENST00000342505.4:c.500T>C	p.Val167Ala	p.V167A	ENST00000342505	NM_002227.2	167	gTg/gCg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115266569	115266569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	88	283	0	ENST00000438362.2:c.1946G>A	p.Arg649His	p.R649H	ENST00000438362	NM_001242891.1	649	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			71	32	90	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	144	392	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123258036	123258036	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	122	284	0	ENST00000358487.5:c.1645A>G	p.Asn549Asp	p.N549D	ENST00000358487	NM_000141.4	549	Aat/Gat																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	122	407	0	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948755	71948755	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	117	470	1	ENST00000298229.2:c.3470del	p.Gly1157AspfsTer45	p.G1157Dfs*45	ENST00000298229	NM_001567.3	1156	cGg/cg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420661	49420661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	171	426	1	ENST00000301067.7:c.15088C>T	p.Arg5030Cys	p.R5030C	ENST00000301067	NM_003482.3	5030	Cgt/Tgt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913436	32913436	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	92	315	0	ENST00000380152.3:c.4948del	p.Ser1650ValfsTer20	p.S1650Vfs*20	ENST00000380152		1648	gcA/gc																																																																															
RAD51B	5890	MSKCC	GRCh37	14	69061320	69061320	+	stop_lost	Nonstop_Mutation	SNP	A	A	T			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	30	89	1	ENST00000487270.1:c.1155A>T	p.Ter385TyrextTer64	p.*385Yext*64	ENST00000487270	NM_133509.3	385	taA/taT																																																																															
CBFB	865	MSKCC	GRCh37	16	67132677	67132677	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200416354		P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	93	279	0	ENST00000412916.2:c.560G>A	p.Arg187His	p.R187H	ENST00000412916		187	cGt/cAt																																																																															
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	159	360	0	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	148	325	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974830	15974830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	124	342	0	ENST00000268712.3:c.4045C>T	p.Arg1349Cys	p.R1349C	ENST00000268712	NM_006311.3	1349	Cgt/Tgt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	158	341	0	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1620992	1620992	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	176	497	0	ENST00000344749.5:c.1068del	p.Val357TrpfsTer37	p.V357Wfs*37	ENST00000344749	NM_001136139.2	356	ccC/cc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231610	5231611	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	49	129	1	ENST00000357368.4:c.1865dup	p.Gln623SerfsTer4	p.Q623Sfs*4	ENST00000357368	NM_002850.3	622	cct/ccCt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244098	5244098	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs73545312		P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	112	406	0	ENST00000357368.4:c.1384G>A	p.Val462Ile	p.V462I	ENST00000357368	NM_002850.3	462	Gtc/Atc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211082	36211082	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	150	410	0	ENST00000222270.7:c.837del	p.Arg280GlyfsTer25	p.R280Gfs*25	ENST00000222270	NM_014727.1	278	aCc/ac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219029	36219029	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748191051		P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	113	417	0	ENST00000222270.7:c.4528G>A	p.Ala1510Thr	p.A1510T	ENST00000222270	NM_014727.1	1510	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223858	36223858	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	243	431	6	ENST00000222270.7:c.6413del	p.Pro2138ArgfsTer15	p.P2138Rfs*15	ENST00000222270	NM_014727.1	2136	ctC/ct																																																																															
CIC	23152	MSKCC	GRCh37	19	42792125	42792125	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	81	338	0	ENST00000575354.2:c.929G>T	p.Gly310Val	p.G310V	ENST00000575354	NM_015125.3	310	gGg/gTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42796882	42796883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761345552		P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	156	445	3	ENST00000575354.2:c.3347dup	p.Ser1117LysfsTer34	p.S1117Kfs*34	ENST00000575354	NM_015125.3	1114	gcc/gCcc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	104	440	1	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	165	386	11	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																															
CASP8	841	MSKCC	GRCh37	2	202149542	202149542	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	107	387	0	ENST00000358485.4:c.983C>G	p.Ala328Gly	p.A328G	ENST00000358485	NM_001080125.1	328	gCt/gGt																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113103	209113103	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	121	306	0	ENST00000345146.2:c.404A>G	p.Tyr135Cys	p.Y135C	ENST00000345146	NM_005896.2	135	tAt/tGt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	172	403	7	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	87	400	0	ENST00000375687.4:c.1933_1934dup	p.Gly646ValfsTer58	p.G646Vfs*58	ENST00000375687	NM_015338.5	642	-/GG																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	260	345	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940112	49940112	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs767239578		P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	85	382	0	ENST00000296474.3:c.931del	p.Ala311ProfsTer27	p.A311Pfs*27	ENST00000296474	NM_002447.2	311	Gcc/cc																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149243908	149243908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	91	242	0	ENST00000360632.3:c.910C>T	p.Pro304Ser	p.P304S	ENST00000360632	NM_015472.4	304	Cca/Tca																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	186	360	2	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628340	187628340	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs536104649		P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	53	407	0	ENST00000441802.2:c.2642G>A	p.Arg881His	p.R881H	ENST00000441802	NM_005245.3	881	cGc/cAc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	99	374	1	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	104	277	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	91	294	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112178033	112178033	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs773874693		P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	136	358	1	ENST00000257430.4:c.6747del	p.Gly2250AlafsTer29	p.G2250Afs*29	ENST00000257430	NM_000038.5	2248	Aaa/aa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931451	131931452	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs397507178		P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	121	284	3	ENST00000265335.6:c.2165dup	p.Glu723GlyfsTer5	p.E723Gfs*5	ENST00000265335		719	cta/ctAa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165126	32165126	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1213449936		P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	78	372	0	ENST00000375023.3:c.5002C>T	p.Arg1668Cys	p.R1668C	ENST00000375023	NM_004557.3	1668	Cgc/Tgc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805363	32805363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	110	339	0	ENST00000374899.4:c.559del	p.His187MetfsTer63	p.H187Mfs*63	ENST00000374899	NM_018833.2	187	Cat/at																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805787	32805788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1174402903		P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	127	451	0	ENST00000374899.4:c.223dup	p.Leu75ProfsTer92	p.L75Pfs*92	ENST00000374899	NM_018833.2	75	ctg/cCtg																																																																															
RAC1	5879	MSKCC	GRCh37	7	6442009	6442009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	56	102	0	ENST00000356142.4:c.568G>A	p.Glu190Lys	p.E190K	ENST00000356142	NM_018890.3	190	Gaa/Aaa																																																																															
HGF	3082	MSKCC	GRCh37	7	81332070	81332070	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	100	284	0	ENST00000222390.5:c.2014del	p.Asp672IlefsTer13	p.D672Ifs*13	ENST00000222390	NM_000601.4	672	Gat/at																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151851177	151851177	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141966811		P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	122	372	0	ENST00000262189.6:c.12194C>T	p.Ala4065Val	p.A4065V	ENST00000262189	NM_170606.2	4065	gCg/gTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	141	342	0	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771987	135771988	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs118203743		P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	99	355	2	ENST00000298552.3:c.3127_3129dup	p.Ser1043dup	p.S1043dup	ENST00000298552	NM_001162426.1	1043	-/AGC																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650448	48650448	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781904528		P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	132	226	0	ENST00000376670.3:c.418C>T	p.Arg140Trp	p.R140W	ENST00000376670	NM_002049.3	140	Cgg/Tgg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115275329	115275329	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	86	345	0	ENST00000438362.2:c.1084G>C	p.Val362Leu	p.V362L	ENST00000438362	NM_001242891.1	362	Gtt/Ctt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731036	162731036	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	130	349	0	ENST00000367921.3:c.891G>T	p.Lys297Asn	p.K297N	ENST00000367921	NM_006182.2	297	aaG/aaT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343232	118343232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	130	358	0	ENST00000534358.1:c.1358C>T	p.Ala453Val	p.A453V	ENST00000534358	NM_005933.3	453	gCc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443881	49443881	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	142	432	0	ENST00000301067.7:c.3490A>T	p.Thr1164Ser	p.T1164S	ENST00000301067	NM_003482.3	1164	Acc/Tcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445146	49445146	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	94	486	0	ENST00000301067.7:c.2320C>G	p.Pro774Ala	p.P774A	ENST00000301067	NM_003482.3	774	Cct/Gct																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56494877	56494877	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	46	332	0	ENST00000267101.3:c.3238del	p.Arg1080ValfsTer22	p.R1080Vfs*22	ENST00000267101	NM_001982.3	1078	tgC/tg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437151	110437151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	53	235	0	ENST00000375856.3:c.1250C>T	p.Ala417Val	p.A417V	ENST00000375856	NM_003749.2	417	gCg/gTg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107966	30107966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	157	361	0	ENST00000331968.5:c.841C>T	p.Pro281Ser	p.P281S	ENST00000331968	NM_002742.2	281	Ccc/Tcc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986826	36986826	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	99	369	0	ENST00000354822.5:c.863T>C	p.Val288Ala	p.V288A	ENST00000354822	NM_001079668.2	288	gTg/gCg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95598951	95598951	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	75	309	0	ENST00000343455.3:c.208A>G	p.Lys70Glu	p.K70E	ENST00000343455	NM_177438.2	70	Aag/Gag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99439996	99439996	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	106	284	0	ENST00000268035.6:c.964A>G	p.Ile322Val	p.I322V	ENST00000268035	NM_000875.3	322	Atc/Gtc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14038666	14038666	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	100	261	0	ENST00000311895.7:c.1991A>G	p.Asp664Gly	p.D664G	ENST00000311895	NM_005236.2	664	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7573999	7573999	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	105	264	2	ENST00000269305.4:c.1028A>G	p.Glu343Gly	p.E343G	ENST00000269305	NM_001126112.2	343	gAg/gGg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16040663	16040663	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778056591		P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	86	239	0	ENST00000268712.3:c.1471G>A	p.Val491Ile	p.V491I	ENST00000268712	NM_006311.3	491	Gtc/Atc																																																																															
NF1	4763	MSKCC	GRCh37	17	29497017	29497017	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	81	197	0	ENST00000358273.4:c.586+2T>C		p.X196_splice	ENST00000358273	NM_001042492.2	196																																																																																
MSI2	124540	MSKCC	GRCh37	17	55334111	55334111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	69	195	0	ENST00000284073.2:c.8C>T	p.Ala3Val	p.A3V	ENST00000284073	NM_138962.2	3	gCa/gTa																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66526582	66526582	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	119	291	0	ENST00000358598.2:c.1138T>C	p.Ser380Pro	p.S380P	ENST00000358598	NM_212471.2	380	Tct/Cct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223515	36223515	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	120	430	0	ENST00000222270.7:c.6065A>G	p.Asp2022Gly	p.D2022G	ENST00000222270	NM_014727.1	2022	gAc/gGc																																																																															
ERF	2077	MSKCC	GRCh37	19	42752628	42752628	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	119	348	0	ENST00000222329.4:c.1636C>T	p.Arg546Ter	p.R546*	ENST00000222329	NM_006494.2	546	Cga/Tga																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867056	45867056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	215	573	0	ENST00000391945.4:c.1063C>T	p.Pro355Ser	p.P355S	ENST00000391945	NM_000400.3	355	Ccc/Tcc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868331	45868331	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			858	56	572	0	ENST00000391945.4:c.446A>C	p.Asp149Ala	p.D149A	ENST00000391945	NM_000400.3	149	gAc/gCc																																																																															
ALK	238	MSKCC	GRCh37	2	29940470	29940470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	93	297	0	ENST00000389048.3:c.761C>A	p.Pro254His	p.P254H	ENST00000389048	NM_004304.4	254	cCt/cAt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264377	46264377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	111	422	0	ENST00000371998.3:c.1424C>T	p.Pro475Leu	p.P475L	ENST00000371998		475	cCa/cTa																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288305	21288305	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	68	366	0	ENST00000354336.3:c.550T>G	p.Ser184Ala	p.S184A	ENST00000354336	NM_005207.3	184	Tcc/Gcc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29120963	29120963	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	70	213	0	ENST00000328354.6:c.592+2T>C		p.X198_splice	ENST00000328354	NM_007194.3	198																																																																																
ALB	213	MSKCC	GRCh37	4	74282071	74282071	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	88	231	0	ENST00000295897.4:c.1289+1G>A		p.X430_splice	ENST00000295897	NM_000477.5	430																																																																																
EIF4E	1977	MSKCC	GRCh37	4	99809066	99809066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	88	233	0	ENST00000280892.6:c.319C>T	p.Pro107Ser	p.P107S	ENST00000280892	NM_001130678.1	107	Cct/Tct																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31521249	31521250	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	100	317	1	ENST00000344624.3:c.927dup	p.Glu310ArgfsTer3	p.E310Rfs*3	ENST00000344624		309	-/A																																																																															
APC	324	MSKCC	GRCh37	5	112173857	112173857	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs566005215		P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	110	349	0	ENST00000257430.4:c.2566C>T	p.Arg856Cys	p.R856C	ENST00000257430	NM_000038.5	856	Cgc/Tgc																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045907	26045907	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	198	498	0	ENST00000540144.1:c.269T>C	p.Val90Ala	p.V90A	ENST00000540144	NM_003531.2	90	gTg/gCg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056292	26056292	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	107	391	0	ENST00000343677.2:c.365del	p.Lys122ArgfsTer45	p.K122Rfs*45	ENST00000343677	NM_005319.3	122	aAg/ag																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803479	32803479	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	130	345	0	ENST00000374899.4:c.680A>C	p.Glu227Ala	p.E227A	ENST00000374899	NM_018833.2	227	gAg/gCg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967931	93967931	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	77	277	0	ENST00000369303.4:c.1996del	p.Thr666ProfsTer2	p.T666Pfs*2	ENST00000369303	NM_004440.3	666	Acc/cc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200022	138200022	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	129	380	0	ENST00000237289.4:c.1443del	p.Gly482AlafsTer6	p.G482Afs*6	ENST00000237289	NM_001270507.1	480	agC/ag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508923	106508923	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	119	369	0	ENST00000359195.3:c.917T>C	p.Val306Ala	p.V306A	ENST00000359195	NM_002649.2	306	gTa/gCa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931829	68931829	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	83	252	0	ENST00000288368.4:c.259T>C	p.Phe87Leu	p.F87L	ENST00000288368	NM_024870.2	87	Ttc/Ctc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396481	139396481	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	134	458	0	ENST00000277541.6:c.5444A>G	p.Asp1815Gly	p.D1815G	ENST00000277541	NM_017617.3	1815	gAc/gGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	35	192	0	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711311	114711311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	98	298	0	ENST00000543371.1:c.326C>T	p.Pro109Leu	p.P109L	ENST00000543371	NM_001198531.1	109	cCc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0068567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	130	255	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299946	15299946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	149	364	0	ENST00000263388.2:c.1232C>T	p.Thr411Met	p.T411M	ENST00000263388	NM_000435.2	411	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	79	403	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028895	47028895	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0068567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	106	333	0	ENST00000329236.7:c.199G>T	p.Glu67Ter	p.E67*	ENST00000329236	NM_001204466.1	67	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577560	7577563	+	frameshift_variant	Frame_Shift_Del	DEL	AACT	AACT	-			P-0068567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	138	306	0	ENST00000269305.4:c.718_721del	p.Ser240ProfsTer6	p.S240Pfs*6	ENST00000269305	NM_001126112.2	240	AGTTcc/cc																																																																															
APC	324	MSKCC	GRCh37	5	112173882	112173883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0068567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	142	408	0	ENST00000257430.4:c.2592_2593dup	p.Pro865LeufsTer52	p.P865Lfs*52	ENST00000257430	NM_000038.5	864	cat/caTCt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151927400	151927400	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			37	17	34	0	ENST00000262189.6:c.2776A>C	p.Thr926Pro	p.T926P	ENST00000262189	NM_170606.2	926	Act/Cct																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858491	27858491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	27	475	0	ENST00000359303.2:c.80G>A	p.Arg27His	p.R27H	ENST00000359303	NM_003535.2	27	cGc/cAc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061245	38061246	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	75	395	0	ENST00000250448.2:c.743dup	p.Asp249GlyfsTer44	p.D249Gfs*44	ENST00000250448	NM_004496.3	248	ccg/ccCg																																																																															
ALB	213	MSKCC	GRCh37	4	74282003	74282003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	15	284	0	ENST00000295897.4:c.1222C>T	p.Pro408Ser	p.P408S	ENST00000295897	NM_000477.5	408	Cct/Tct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0068577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	152	440	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728847	190728847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	109	334	0	ENST00000441310.2:c.2235G>T	p.Met745Ile	p.M745I	ENST00000441310	NM_000534.4	745	atG/atT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223172	36223172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	118	543	0	ENST00000222270.7:c.5722G>A	p.Ala1908Thr	p.A1908T	ENST00000222270	NM_014727.1	1908	Gct/Act																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36208922	36208923	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCGGC			P-0068577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	123	224	0	ENST00000222270.7:c.11_16dup	p.Ala4_Ala5dup	p.A4_A5dup	ENST00000222270	NM_014727.1	4	atg/atGGCGGCg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222808	36222808	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0068577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	70	394	0	ENST00000222270.7:c.5438-1G>C		p.X1813_splice	ENST00000222270	NM_014727.1	1813																																																																																
MAP2K4	6416	MSKCC	GRCh37	17	12032455	12032455	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0068577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	179	371	0	ENST00000353533.5:c.892-1G>T		p.X298_splice	ENST00000353533	NM_003010.3	298																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36222913	36222913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	84	505	0	ENST00000222270.7:c.5542G>A	p.Asp1848Asn	p.D1848N	ENST00000222270	NM_014727.1	1848	Gat/Aat																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872934	35872934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	94	323	0	ENST00000216797.5:c.298G>T	p.Asp100Tyr	p.D100Y	ENST00000216797	NM_020529.2	100	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0068605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	369	366	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170020841	170020841	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	196	220	0	ENST00000295797.4:c.1717A>G	p.Lys573Glu	p.K573E	ENST00000295797	NM_002740.5	573	Aag/Gag																																																																															
NADK	65220	MSKCC	GRCh37	1	1684414	1684414	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	209	416	0	ENST00000341426.5:c.1270T>G	p.Cys424Gly	p.C424G	ENST00000341426	NM_023018.4	424	Tgc/Ggc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098816	178098816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			66	374	363	0	ENST00000397062.3:c.229G>A	p.Asp77Asn	p.D77N	ENST00000397062	NM_006164.4	77	Gat/Aat																																																																															
MST1	4485	MSKCC	GRCh37	3	49724648	49724648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			43	319	246	0	ENST00000449682.2:c.541C>T	p.Pro181Ser	p.P181S	ENST00000449682	NM_020998.3	181	Cct/Tct																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247185	153247185	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			74	460	310	0	ENST00000281708.4:c.1617del	p.His540IlefsTer16	p.H540Ifs*16	ENST00000281708	NM_033632.3	539	ggG/gg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0068612-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	4134	307	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RB1	5925	MSKCC	GRCh37	13	48934234	48934234	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068612-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	114	299	0	ENST00000267163.4:c.689C>A	p.Ser230Ter	p.S230*	ENST00000267163	NM_000321.2	230	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-			P-0068612-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	94	329	0	ENST00000269305.4:c.673-2del		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139391833	139391833	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375969725		P-0068612-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	88	431	1	ENST00000277541.6:c.6358C>T	p.Arg2120Cys	p.R2120C	ENST00000277541	NM_017617.3	2120	Cgc/Tgc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38064147	38064147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068612-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	61	513	0	ENST00000250448.2:c.31G>A	p.Glu11Lys	p.E11K	ENST00000250448	NM_004496.3	11	Gaa/Aaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255148	16255148	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068612-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	139	404	0	ENST00000375759.3:c.2413G>C	p.Glu805Gln	p.E805Q	ENST00000375759	NM_015001.2	805	Gag/Cag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0068537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	44	238	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78433847	78433848	+	splice_donor_variant	Splice_Site	DEL	AC	AC	-	rs1477051807		P-0068537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	32	302	0	ENST00000370768.2:c.250+1_250+2del		p.X84_splice	ENST00000370768	NM_003902.3	84																																																																																
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0068537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	105	552	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0068537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	25	456	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247243	153247243	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	21	475	0	ENST00000281708.4:c.1559A>G	p.Asp520Gly	p.D520G	ENST00000281708	NM_033632.3	520	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	78	538	1	ENST00000257430.4:c.4364del	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030585	47030585	+	intron_variant	Intron	SNP	T	T	G	rs377667483		P-0068537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	25	453	2	ENST00000329236.7:c.201+1688T>G		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0068537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	66	501	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589558	67589558	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	61	362	0	ENST00000274335.5:c.1321A>C	p.Asn441His	p.N441H	ENST00000274335		441	Aat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0068537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	42	329	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46254731	46254731	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0068537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	59	304	0	ENST00000334344.6:c.4921A>T	p.Lys1641Ter	p.K1641*	ENST00000334344	NM_152641.2	1641	Aag/Tag																																																																															
BARD1	580	MSKCC	GRCh37	2	215657081	215657081	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs140254589		P-0068537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	70	415	0	ENST00000260947.4:c.304G>C	p.Asp102His	p.D102H	ENST00000260947	NM_000465.2	102	Gac/Cac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591885	48591886	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTGATGGATACGTGGACCCTTCTGGAGGAGATCGCTTTTGTTTGGGTCAACTCTCCA			P-0068537-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	36	451	0	ENST00000342988.3:c.1049_1105dup	p.Ser368_Asn369insIleAspGlyTyrValAspProSerGlyGlyAspArgPheCysLeuGlyGlnLeuSer	p.S368_N369insIDGYVDPSGGDRFCLGQLS	ENST00000342988	NM_005359.5	350	gtt/gTTGATGGATACGTGGACCCTTCTGGAGGAGATCGCTTTTGTTTGGGTCAACTCTCCAtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0068538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	167	567	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	159	414	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820602	3820602	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749011678		P-0068538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	164	465	0	ENST00000262367.5:c.2849C>T	p.Thr950Met	p.T950M	ENST00000262367	NM_004380.2	950	aCg/aTg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856097	111856097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1013978345		P-0068538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	139	470	0	ENST00000341259.2:c.148C>T	p.Arg50Trp	p.R50W	ENST00000341259	NM_005475.2	50	Cgg/Tgg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864639	68864639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	88	323	0	ENST00000288368.4:c.10G>A	p.Asp4Asn	p.D4N	ENST00000288368	NM_024870.2	4	Gac/Aac																																																																															
CYLD	1540	MSKCC	GRCh37	16	50826570	50826570	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	60	306	0	ENST00000398568.2:c.2295A>C	p.Lys765Asn	p.K765N	ENST00000398568	NM_001042412.1	765	aaA/aaC																																																																															
LYN	4067	MSKCC	GRCh37	8	56879439	56879439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	141	446	0	ENST00000519728.1:c.956C>T	p.Thr319Ile	p.T319I	ENST00000519728	NM_002350.3	319	aCc/aTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0068538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	59	322	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351226	89351226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	149	524	1	ENST00000301030.4:c.1724G>A	p.Ser575Asn	p.S575N	ENST00000301030	NM_001256183.1	575	aGc/aAc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324534	31324535	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	29	372	0	ENST00000412585.2:c.273dup	p.Lys92GlnfsTer7	p.K92Qfs*7	ENST00000412585	NM_005514.6	91	-/C																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492698	56492698	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0068538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	109	461	0	ENST00000407977.2:c.241A>T	p.Lys81Ter	p.K81*	ENST00000407977		81	Aaa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55229207	55229207	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	74	431	0	ENST00000275493.2:c.1514T>A	p.Val505Asp	p.V505D	ENST00000275493	NM_005228.3	505	gTc/gAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247364	153247364	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068538-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	109	404	0	ENST00000281708.4:c.1438G>T	p.Asp480Tyr	p.D480Y	ENST00000281708	NM_033632.3	480	Gat/Tat																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9778870	9778870	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	51	503	0	ENST00000377346.4:c.1139A>G	p.Asn380Ser	p.N380S	ENST00000377346	NM_005026.3	380	aAc/aGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447815	49447832	+	inframe_deletion	In_Frame_Del	DEL	TGGATAGGAAGGAACCGC	TGGATAGGAAGGAACCGC	-			P-0068539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	40	452	0	ENST00000301067.7:c.602_619del	p.Ser201_Ser206del	p.S201_S206del	ENST00000301067	NM_003482.3	201	aGCGGTTCCTTCCTATCCAtg/atg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999098	100999098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	29	615	0	ENST00000325455.5:c.704C>T	p.Pro235Leu	p.P235L	ENST00000325455	NM_001202474.3	235	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0068477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	76	508	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70353052	70353052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	39	342	1	ENST00000374080.3:c.4607G>A	p.Arg1536Gln	p.R1536Q	ENST00000374080		1536	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0068477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	56	264	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023241	27023242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0068477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	60	386	0	ENST00000324856.7:c.347_348insAT	p.Asn116LysfsTer117	p.N116Kfs*117	ENST00000324856	NM_006015.4	116	aac/aaATc																																																																															
AXL	558	MSKCC	GRCh37	19	41726726	41726727	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0068477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	62	431	0	ENST00000301178.4:c.271_272delinsAT	p.Asp91Ile	p.D91I	ENST00000301178	NM_021913.4	91	GAt/ATt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198265573	198265573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	107	395	0	ENST00000335508.6:c.2584G>A	p.Glu862Lys	p.E862K	ENST00000335508	NM_012433.2	862	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0068483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	111	527	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040723	47040723	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	154	465	0	ENST00000329236.7:c.1126del	p.Leu376SerfsTer31	p.L376Sfs*31	ENST00000329236	NM_001204466.1	375	tCc/tc																																																																															
MED12	9968	MSKCC	GRCh37	X	70356338	70356338	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	154	499	0	ENST00000374080.3:c.5237del	p.Pro1746GlnfsTer12	p.P1746Qfs*12	ENST00000374080		1745	Ccc/cc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105891	27105892	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	TT			P-0068483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	173	513	0	ENST00000324856.7:c.5502_5503delinsTT	p.Gln1835Ter	p.Q1835*	ENST00000324856	NM_006015.4	1834	gtGCag/gtTTag																																																																															
RB1	5925	MSKCC	GRCh37	13	48878141	48878141	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	131	491	0	ENST00000267163.4:c.93G>C	p.Glu31Asp	p.E31D	ENST00000267163	NM_000321.2	31	gaG/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0068484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	126	474	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0068484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	255	467	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0068484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	65	331	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0068484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	83	474	5	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
APC	324	MSKCC	GRCh37	5	112176015	112176015	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	100	447	0	ENST00000257430.4:c.4724del	p.Leu1575GlnfsTer75	p.L1575Qfs*75	ENST00000257430	NM_000038.5	1575	cTa/ca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845366	151845366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	101	444	0	ENST00000262189.6:c.13646G>A	p.Arg4549His	p.R4549H	ENST00000262189	NM_170606.2	4549	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0068484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	140	292	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46262290	46262290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	69	442	0	ENST00000371998.3:c.874G>A	p.Gly292Ser	p.G292S	ENST00000371998		292	Ggc/Agc																																																																															
CDH1	999	MSKCC	GRCh37	16	68857434	68857434	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	103	453	0	ENST00000261769.5:c.2069G>T	p.Gly690Val	p.G690V	ENST00000261769	NM_004360.3	690	gGg/gTg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976966	18976966	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	74	478	0	ENST00000262803.5:c.3351G>C	p.Gln1117His	p.Q1117H	ENST00000262803	NM_002911.3	1117	caG/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0007292-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			526	16	652	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55233037	55233037	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1477025000		P-0007292-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			499	24	574	0	ENST00000275493.2:c.1787C>T	p.Pro596Leu	p.P596L	ENST00000275493	NM_005228.3	596	cCg/cTg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44920576	44920576	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007292-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	22	181	0	ENST00000377967.4:c.1337del	p.Ser446LeufsTer24	p.S446Lfs*24	ENST00000377967	NM_021140.2	446	tCt/tt																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652366	48652366	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007292-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			264	32	374	0	ENST00000376670.3:c.1037G>T	p.Cys346Phe	p.C346F	ENST00000376670	NM_002049.3	346	tGt/tTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039906	47039906	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0066822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			178	15	209	0	ENST00000329236.7:c.1014+1G>T		p.X338_splice	ENST00000329236	NM_001204466.1	338																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0066822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			339	28	385	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59878784	59878784	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			449	31	546	0	ENST00000259008.2:c.970A>T	p.Thr324Ser	p.T324S	ENST00000259008	NM_032043.2	324	Aca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7579403	7579413	+	frameshift_variant	Frame_Shift_Del	DEL	GATGACAGGGG	GATGACAGGGG	-			P-0066822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			564	32	736	0	ENST00000269305.4:c.274_284del	p.Pro92PhefsTer53	p.P92Ffs*53	ENST00000269305	NM_001126112.2	92	CCCCTGTCATCt/t																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	732	639	0	ENST00000269305.4:c.517G>C	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ctg																																																																															
ATR	545	MSKCC	GRCh37	3	142226846	142226846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			767	334	404	0	ENST00000350721.4:c.4958G>A	p.Arg1653Gln	p.R1653Q	ENST00000350721	NM_001184.3	1653	cGa/cAa																																																																															
XIAP	331	MSKCC	GRCh37	X	123034529	123034529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	76	222	0	ENST00000355640.3:c.1286C>T	p.Thr429Ile	p.T429I	ENST00000355640		429	aCt/aTt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884820	134884820	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	109	379	0	ENST00000398015.3:c.1596G>C	p.Lys532Asn	p.K532N	ENST00000398015	NM_004441.4	532	aaG/aaC																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518378	8518378	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1518	355	431	0	ENST00000356435.5:c.1013G>T	p.Ser338Ile	p.S338I	ENST00000356435		338	aGc/aTc																																																																															
ATRX	546	MSKCC	GRCh37	X	76845305	76845305	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0068481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	109	339	0	ENST00000373344.5:c.6216A>C	p.Lys2072Asn	p.K2072N	ENST00000373344	NM_000489.3	2072	aaA/aaC																																																																															
ERF	2077	MSKCC	GRCh37	19	42753362	42753362	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	194	650	0	ENST00000222329.4:c.902C>G	p.Ser301Cys	p.S301C	ENST00000222329	NM_006494.2	301	tCc/tGc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256571	16256571	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	216	556	0	ENST00000375759.3:c.3836C>G	p.Pro1279Arg	p.P1279R	ENST00000375759	NM_015001.2	1279	cCt/cGt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068491-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	45	474	0	ENST00000349496.5:c.1982G>C	p.Arg661Pro	p.R661P	ENST00000349496	NM_001904.3	661	cGa/cCa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754656	57754659	+	frameshift_variant	Frame_Shift_Del	DEL	TTTC	TTTC	-			P-0068491-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	180	357	0	ENST00000274289.3:c.388_391del	p.Glu130Ter	p.E130*	ENST00000274289	NM_006622.3	130	GAAAta/ta																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446002	49446002	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068491-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	409	667	0	ENST00000301067.7:c.1464del	p.Leu489TrpfsTer441	p.L489Wfs*441	ENST00000301067	NM_003482.3	488	ccG/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431176	49431177	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0068491-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	364	574	0	ENST00000301067.7:c.9962dup	p.Gln3322ThrfsTer101	p.Q3322Tfs*101	ENST00000301067	NM_003482.3	3321	cga/cgGa																																																																															
CBL	867	MSKCC	GRCh37	11	119142582	119142582	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068491-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	256	480	0	ENST00000264033.4:c.581T>C	p.Phe194Ser	p.F194S	ENST00000264033	NM_005188.3	194	tTt/tCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577093	7577093	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882008		P-0058038-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			431	39	500	0	ENST00000269305.4:c.845G>A	p.Arg282Gln	p.R282Q	ENST00000269305	NM_001126112.2	282	cGg/cAg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524486	44524486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058038-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			252	185	387	0	ENST00000291552.4:c.71T>C	p.Ile24Thr	p.I24T	ENST00000291552	NM_006758.2	24	aTt/aCt																																																																															
NADK	65220	MSKCC	GRCh37	1	1688556	1688556	+	intron_variant	Intron	SNP	T	T	C	rs944291919		P-0058038-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	245	525	0	ENST00000341426.5:c.393+64A>G		p.*131*	ENST00000341426	NM_023018.4																																																																																	
MAX	4149	MSKCC	GRCh37	14	65560459	65560459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058038-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			87	207	439	0	ENST00000358664.4:c.138G>T	p.Leu46Phe	p.L46F	ENST00000358664	NM_002382.4	46	ttG/ttT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0067111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	130	534	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946973	71946973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375841975		P-0067111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	159	696	0	ENST00000298229.2:c.2822C>T	p.Thr941Met	p.T941M	ENST00000298229	NM_001567.3	941	aCg/aTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653866	89653868	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	GGT	GGT	-			P-0067111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			37	30	340	0	ENST00000371953.3:c.164_164+2del		p.X55_splice	ENST00000371953	NM_000314.4	55																																																																																
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0067129-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			136	56	187	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0067129-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			117	24	90	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120114	70120115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0068194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			63	17	464	3	ENST00000245479.2:c.1121dup	p.Gln375AlafsTer203	p.Q375Afs*203	ENST00000245479	NM_000346.3	372	-/C																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923667	72923667	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1292211543		P-0068194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	75	506	0	ENST00000268489.5:c.3411G>C	p.Gln1137His	p.Q1137H	ENST00000268489	NM_006885.3	1137	caG/caC																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	72	495	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0068420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	30	372	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242478	55242478	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913229		P-0068420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	85	382	0	ENST00000275493.2:c.2248G>C	p.Ala750Pro	p.A750P	ENST00000275493	NM_005228.3	750	Gca/Cca																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038529	47038529	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	20	248	0	ENST00000329236.7:c.460G>T	p.Glu154Ter	p.E154*	ENST00000329236	NM_001204466.1	154	Gag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242474	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGA	GAATTAAGA	-			P-0068420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	80	392	0	ENST00000275493.2:c.2239_2247del	p.Leu747_Glu749del	p.L747_E749del	ENST00000275493	NM_005228.3	746	GAATTAAGA/-																																																																															
MED12	9968	MSKCC	GRCh37	X	70352585	70352694	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CACAGTCTCCCTTTTCTCCTCTCCTCTTCTCTCCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTTTCTCTTGTCTCTAG	CACAGTCTCCCTTTTCTCCTCTCCTCTTCTCTCCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTTTCTCTTGTCTCTAG	-			P-0068420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			26	49	64	0	ENST00000374080.3:c.4416-108_4417del		p.X1472_splice	ENST00000374080		1472																																																																																
TP53	7157	MSKCC	GRCh37	17	7577157	7577157	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs1060501207		P-0068474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	53	131	0	ENST00000269305.4:c.783-2A>G		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212989592	212989592	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	13	175	0	ENST00000342788.4:c.119C>G	p.Ser40Cys	p.S40C	ENST00000342788	NM_005235.2	40	tCt/tGt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346340	73346340	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			83	11	129	0	ENST00000377767.4:c.1460A>T	p.Asp487Val	p.D487V	ENST00000377767	NM_014953.3	487	gAc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577136	7577136	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	62	165	0	ENST00000269305.4:c.802A>T	p.Asn268Tyr	p.N268Y	ENST00000269305	NM_001126112.2	268	Aac/Tac																																																																															
ATR	545	MSKCC	GRCh37	3	142231197	142231197	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	27	146	0	ENST00000350721.4:c.4757A>G	p.Asp1586Gly	p.D1586G	ENST00000350721	NM_001184.3	1586	gAc/gGc																																																																															
MSH3	4437	MSKCC	GRCh37	5	80088604	80088604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	13	157	0	ENST00000265081.6:c.2596G>A	p.Val866Met	p.V866M	ENST00000265081	NM_002439.4	866	Gtg/Atg																																																																															
MGA	23269	MSKCC	GRCh37	15	42046580	42046636	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTAGGTGTGCTTGCCACTCAATACATTATTTACTTTTATAATGATGTATTTCAGAA	TTTAGGTGTGCTTGCCACTCAATACATTATTTACTTTTATAATGATGTATTTCAGAA	-			P-0068474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	29	81	0	ENST00000219905.7:c.7009-54_7011del		p.X2337_splice	ENST00000219905	NM_001164273.1	2337																																																																																
STK11	6794	MSKCC	GRCh37	19	1219347	1219349	+	frameshift_variant	Frame_Shift_Del	DEL	GTG	GTG	TT			P-0068474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	67	192	0	ENST00000326873.7:c.399_401delinsTT	p.Cys134LeufsTer27	p.C134Lfs*27	ENST00000326873	NM_000455.4	133	gtGTGt/gtTTt																																																																															
RHOA	387	MSKCC	GRCh37	3	49405953	49405953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	241	482	0	ENST00000418115.1:c.185G>A	p.Gly62Glu	p.G62E	ENST00000418115	NM_001664.2	62	gGg/gAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs137853076		P-0068502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	971	516	0	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577505	7577505	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	604	412	0	ENST00000269305.4:c.776A>T	p.Asp259Val	p.D259V	ENST00000269305	NM_001126112.2	259	gAc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0068502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	156	388	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94194110	94194110	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773469981		P-0068502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	102	309	0	ENST00000323929.3:c.1318G>A	p.Ala440Thr	p.A440T	ENST00000323929	NM_005591.3	440	Gca/Aca																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599757	10600058	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGACCTTGTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAGCAAAAGCAAAAGCAGTCCACAAAAGATGGGCTAGTCAGGACTCTTCCCCGCCCCCAGGGCCTCACCAAGGACGTAGATTCTCCCCTGGTGGACAGTGATCCCCAGGGCACTTCGCCGGTGCTTCATGGGGGCTACGAAAGTCCACGTCTCTGTTTCCACATCGTAGCGCTCCACGCTGTTCAGCTGGTCCTGACCATCATAGCCCCCAGCAGCATAGATACAGTTGTGCAGGACGCAGACGCCTAAAGGGCACCAT	GAGACCTTGTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAGCAAAAGCAAAAGCAGTCCACAAAAGATGGGCTAGTCAGGACTCTTCCCCGCCCCCAGGGCCTCACCAAGGACGTAGATTCTCCCCTGGTGGACAGTGATCCCCAGGGCACTTCGCCGGTGCTTCATGGGGGCTACGAAAGTCCACGTCTCTGTTTCCACATCGTAGCGCTCCACGCTGTTCAGCTGGTCCTGACCATCATAGCCCCCAGCAGCATAGATACAGTTGTGCAGGACGCAGACGCCTAAAGGGCACCAT	-			P-0068502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			57	256	112	0	ENST00000171111.5:c.1532-14_1708+111del		p.X511_splice	ENST00000171111	NM_203500.1	511																																																																																
NBN	4683	MSKCC	GRCh37	8	90958418	90958419	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGATGGATT			P-0068502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	34	372	0	ENST00000265433.3:c.2019_2020insAATCCATCG	p.Asn671_Ser673dup	p.N671_S673dup	ENST00000265433	NM_002485.4	671	-/AATCCATCG																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073398	8073398	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201286989		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	156	525	0	ENST00000377482.5:c.1261G>A	p.Ala421Thr	p.A421T	ENST00000377482	NM_018948.3	421	Gcc/Acc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65303627	65303627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	118	404	0	ENST00000342505.4:c.3128G>T	p.Ser1043Ile	p.S1043I	ENST00000342505	NM_002227.2	1043	aGc/aTc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	118	488	2	ENST00000342505.4:c.2580dup	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843514	156843514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137994522		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	123	517	0	ENST00000524377.1:c.940C>T	p.Arg314Cys	p.R314C	ENST00000524377	NM_002529.3	314	Cgc/Tgc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	157	516	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943783	71943783	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	98	595	0	ENST00000298229.2:c.1826A>G	p.Asn609Ser	p.N609S	ENST00000298229	NM_001567.3	609	aAc/aGc																																																																															
YAP1	10413	MSKCC	GRCh37	11	102033248	102033248	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867350713		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	167	567	0	ENST00000282441.5:c.634G>A	p.Val212Ile	p.V212I	ENST00000282441	NM_001130145.2	212	Gtc/Atc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118390460	118390461	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	128	513	0	ENST00000534358.1:c.11280dup	p.Asn3762GlufsTer9	p.N3762Efs*9	ENST00000534358	NM_005933.3	3758	-/C																																																																															
CBL	867	MSKCC	GRCh37	11	119170274	119170274	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057518072		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	130	472	0	ENST00000264033.4:c.2504G>A	p.Arg835Gln	p.R835Q	ENST00000264033	NM_005188.3	835	cGg/cAg																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	86	376	2	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	158	559	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112892398	112892398	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143433437		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	126	381	0	ENST00000351677.2:c.556C>T	p.Arg186Trp	p.R186W	ENST00000351677	NM_002834.3	186	Cgg/Tgg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112940045	112940045	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150730493		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	150	418	0	ENST00000351677.2:c.1697C>T	p.Thr566Met	p.T566M	ENST00000351677	NM_002834.3	566	aCg/aTg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562564	21562564	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1452154404		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	83	400	1	ENST00000382592.4:c.1355C>T	p.Pro452Leu	p.P452L	ENST00000382592	NM_014572.2	452	cCg/cTg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28636193	28636193	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777905087		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			772	128	477	0	ENST00000241453.7:c.179C>T	p.Pro60Leu	p.P60L	ENST00000241453	NM_004119.2	60	cCg/cTg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134019	41134019	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146488369		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			786	107	599	0	ENST00000379561.5:c.1609C>T	p.Arg537Cys	p.R537C	ENST00000379561	NM_002015.3	537	Cgt/Tgt																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134267	41134267	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1028000118		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	115	492	0	ENST00000379561.5:c.1361A>G	p.Gln454Arg	p.Q454R	ENST00000379561	NM_002015.3	454	cAg/cGg																																																																															
CD276	80381	MSKCC	GRCh37	15	73994794	73994794	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747338278		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	130	434	1	ENST00000318443.5:c.278C>T	p.Thr93Met	p.T93M	ENST00000318443	NM_001024736.1	93	aCg/aTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679814	88679814	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753910026		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	117	383	0	ENST00000360948.2:c.649G>A	p.Val217Ile	p.V217I	ENST00000360948	NM_001012338.2	217	Gtc/Atc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341596	89341596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	130	361	0	ENST00000301030.4:c.7474G>A	p.Ala2492Thr	p.A2492T	ENST00000301030	NM_001256183.1	2492	Gca/Aca																																																																															
NF1	4763	MSKCC	GRCh37	17	29553478	29553478	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747195556		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	171	447	0	ENST00000358273.4:c.2033del	p.Pro678ArgfsTer10	p.P678Rfs*10	ENST00000358273	NM_001042492.2	676	aCc/ac																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39637944	39637944	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	125	461	1	ENST00000262039.4:c.2366del	p.Gly789AlafsTer27	p.G789Afs*27	ENST00000262039	NM_002647.2	787	atG/at																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622410	1622410	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	118	367	0	ENST00000344749.5:c.554A>G	p.Tyr185Cys	p.Y185C	ENST00000344749	NM_001136139.2	185	tAc/tGc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2223454	2223454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	178	471	0	ENST00000398665.3:c.3565C>T	p.Pro1189Ser	p.P1189S	ENST00000398665	NM_032482.2	1189	Cca/Tca																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10252720	10252720	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377078524		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	165	498	0	ENST00000340748.4:c.3245G>A	p.Arg1082His	p.R1082H	ENST00000340748		1082	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224340	36224340	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	171	531	0	ENST00000222270.7:c.6895del	p.Arg2299GlyfsTer26	p.R2299Gfs*26	ENST00000222270	NM_014727.1	2297	gCc/gc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			746	48	607	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
ERF	2077	MSKCC	GRCh37	19	42753584	42753584	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	119	514	0	ENST00000222329.4:c.680A>G	p.His227Arg	p.H227R	ENST00000222329	NM_006494.2	227	cAt/cGt																																																																															
CIC	23152	MSKCC	GRCh37	19	42792017	42792017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	154	594	0	ENST00000575354.2:c.821G>A	p.Arg274Gln	p.R274Q	ENST00000575354	NM_015125.3	274	cGa/cAa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910259	50910259	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1043752384		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	139	415	1	ENST00000440232.2:c.1514G>A	p.Arg505His	p.R505H	ENST00000440232	NM_002691.3	505	cGc/cAc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085972	16085972	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs998174759		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	143	442	0	ENST00000281043.3:c.1148G>A	p.Arg383His	p.R383H	ENST00000281043	NM_005378.4	383	cGc/cAc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39222520	39222520	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	29	452	1	ENST00000402219.2:c.3090del	p.Lys1030AsnfsTer6	p.K1030Nfs*6	ENST00000402219	NM_005633.3	1030	aaA/aa																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46587791	46587791	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	80	451	1	ENST00000263734.3:c.475del	p.Ser159AlafsTer12	p.S159Afs*12	ENST00000263734	NM_001430.4	157	Aaa/aa																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46602969	46602969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs574490008		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	154	495	0	ENST00000263734.3:c.1027G>A	p.Val343Ile	p.V343I	ENST00000263734	NM_001430.4	343	Gtc/Atc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	130	570	3	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
REL	5966	MSKCC	GRCh37	2	61121667	61121667	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs955883570		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	113	485	0	ENST00000295025.8:c.289C>T	p.Arg97Cys	p.R97C	ENST00000295025	NM_002908.2	97	Cgc/Tgc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212484000	212484000	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1369649105		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	54	352	0	ENST00000342788.4:c.2203G>A	p.Gly735Ser	p.G735S	ENST00000342788	NM_005235.2	735	Ggt/Agt																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	171	598	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	110	564	5	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
ERG	2078	MSKCC	GRCh37	21	39755427	39755427	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	113	604	1	ENST00000288319.7:c.1338del	p.Phe446LeufsTer59	p.F446Lfs*59	ENST00000288319	NM_182918.3	446	ttT/tt																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	102	353	0	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	157	506	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																															
MST1	4485	MSKCC	GRCh37	3	49723037	49723037	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767971831		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	83	271	0	ENST00000449682.2:c.1379G>A	p.Arg460Gln	p.R460Q	ENST00000449682	NM_020998.3	460	cGa/cAa																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934243	49934243	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1407832113		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	174	524	4	ENST00000296474.3:c.2264del	p.Gly755ValfsTer19	p.G755Vfs*19	ENST00000296474	NM_002447.2	755	gGt/gt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	120	491	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	101	343	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
KIT	3815	MSKCC	GRCh37	4	55602952	55602952	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1237984655		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	105	450	0	ENST00000288135.5:c.2662C>T	p.Arg888Trp	p.R888W	ENST00000288135	NM_000222.2	888	Cgg/Tgg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467590	66467590	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746706656		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	119	478	0	ENST00000273854.3:c.679C>T	p.Arg227Cys	p.R227C	ENST00000273854	NM_004439.5	227	Cgt/Tgt																																																																															
TET2	54790	MSKCC	GRCh37	4	106193762	106193762	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	114	468	0	ENST00000380013.4:c.4227del	p.Lys1409AsnfsTer39	p.K1409Nfs*39	ENST00000380013	NM_001127208.2	1408	ggA/gg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538991	187538991	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	162	592	0	ENST00000441802.2:c.8749C>T	p.Arg2917Ter	p.R2917*	ENST00000441802	NM_005245.3	2917	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	106	353	2	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112162944	112162944	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	89	349	0	ENST00000257430.4:c.1548G>T	p.Lys516Asn	p.K516N	ENST00000257430	NM_000038.5	516	aaG/aaT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163553	32163554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs777647776		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	24	451	2	ENST00000375023.3:c.5672dup	p.Gly1892ArgfsTer24	p.G1892Rfs*24	ENST00000375023	NM_004557.3	1891	ggc/ggGc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288200	33288200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	176	507	0	ENST00000374542.5:c.1208C>T	p.Ser403Phe	p.S403F	ENST00000374542	NM_001141970.1	403	tCc/tTc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005515	150005515	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	37	502	0	ENST00000253339.5:c.710del	p.Pro237HisfsTer6	p.P237Hfs*6	ENST00000253339		237	cCa/ca																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946337	2946337	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759681668		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	120	464	1	ENST00000396946.4:c.3400G>A	p.Val1134Ile	p.V1134I	ENST00000396946	NM_032415.4	1134	Gtt/Att																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962854	2962854	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	86	417	0	ENST00000396946.4:c.2054del	p.Gly685AlafsTer31	p.G685Afs*31	ENST00000396946	NM_032415.4	685	gGc/gc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956748	68956748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	78	386	0	ENST00000288368.4:c.866C>T	p.Thr289Ile	p.T289I	ENST00000288368	NM_024870.2	289	aCa/aTa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	48	491	2	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499763	8499763	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745717615		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	208	479	0	ENST00000356435.5:c.2206G>A	p.Val736Met	p.V736M	ENST00000356435		736	Gtg/Atg																																																																															
SYK	6850	MSKCC	GRCh37	9	93650071	93650071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1486347243		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	139	445	0	ENST00000375746.1:c.1622C>T	p.Pro541Leu	p.P541L	ENST00000375746	NM_001174167.1	541	cCg/cTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	248	436	4	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137325984	137325984	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753474465		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	145	448	2	ENST00000481739.1:c.1172C>T	p.Ala391Val	p.A391V	ENST00000481739	NM_002957.4	391	gCg/gTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396913	139396913	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768040014		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	117	379	0	ENST00000277541.6:c.5195C>T	p.Ala1732Val	p.A1732V	ENST00000277541	NM_017617.3	1732	gCg/gTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222456	53222456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	38	286	0	ENST00000375401.3:c.4376G>A	p.Arg1459Gln	p.R1459Q	ENST00000375401	NM_004187.3	1459	cGg/cAg																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544224	86544224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	29	510	0	ENST00000262426.4:c.49G>A	p.Gly17Ser	p.G17S	ENST00000262426	NM_001451.2	17	Ggc/Agc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	132	461	2	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	13	219	2	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
GNB1	2782	MSKCC	GRCh37	1	1720657	1720657	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	50	499	0	ENST00000378609.4:c.751A>G	p.Arg251Gly	p.R251G	ENST00000378609	NM_002074.3	251	Agg/Ggg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65332788	65332788	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	98	488	0	ENST00000342505.4:c.751T>A	p.Phe251Ile	p.F251I	ENST00000342505	NM_002227.2	251	Ttt/Att																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165602	118165602	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs921184290		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	149	517	0	ENST00000369448.3:c.112C>T	p.Arg38Ter	p.R38*	ENST00000369448	NM_017709.3	38	Cga/Tga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120469204	120469204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	158	507	0	ENST00000256646.2:c.3923G>A	p.Cys1308Tyr	p.C1308Y	ENST00000256646	NM_024408.3	1308	tGt/tAt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162741936	162741936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55973200		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	134	483	0	ENST00000367921.3:c.1627G>A	p.Val543Ile	p.V543I	ENST00000367921	NM_006182.2	543	Gtc/Atc																																																																															
PARP1	142	MSKCC	GRCh37	1	226574076	226574076	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	116	391	0	ENST00000366794.5:c.785A>C	p.Lys262Thr	p.K262T	ENST00000366794	NM_001618.3	262	aAg/aCg																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230561443	230561443	+	5_prime_UTR_variant	5'UTR	DEL	G	G	-			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	132	587	0	ENST00000391860.1:c.-114del		p.*38*	ENST00000391860	NM_001258311.1																																																																																	
WT1	7490	MSKCC	GRCh37	11	32421513	32421513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769934402		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	111	513	0	ENST00000332351.3:c.1079G>A	p.Gly360Asp	p.G360D	ENST00000332351	NM_024426.4	360	gGt/gAt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939470	71939470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	136	614	0	ENST00000298229.2:c.325C>A	p.Leu109Ile	p.L109I	ENST00000298229	NM_001567.3	109	Ctt/Att																																																																															
ATM	472	MSKCC	GRCh37	11	108186775	108186775	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	32	489	1	ENST00000278616.4:c.6133G>T	p.Ala2045Ser	p.A2045S	ENST00000278616	NM_000051.3	2045	Gcc/Tcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49415595	49415595	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	175	461	0	ENST00000301067.7:c.16582G>T	p.Gly5528Ter	p.G5528*	ENST00000301067	NM_003482.3	5528	Gga/Tga																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865366	57865366	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	97	598	0	ENST00000228682.2:c.2843A>G	p.Tyr948Cys	p.Y948C	ENST00000228682	NM_005269.2	948	tAt/tGt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856179	111856179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1219220572		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	121	444	1	ENST00000341259.2:c.230G>A	p.Arg77His	p.R77H	ENST00000341259	NM_005475.2	77	cGc/cAc																																																																															
RAB35	11021	MSKCC	GRCh37	12	120535114	120535114	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	143	485	0	ENST00000229340.5:c.541C>A	p.Gln181Lys	p.Q181K	ENST00000229340	NM_006861.6	181	Cag/Aag																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103510665	103510665	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	71	449	0	ENST00000355739.4:c.569C>A	p.Ser190Tyr	p.S190Y	ENST00000355739	NM_000123.3	190	tCt/tAt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986835	36986835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	69	456	0	ENST00000354822.5:c.854C>T	p.Pro285Leu	p.P285L	ENST00000354822	NM_001079668.2	285	cCg/cTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42005545	42005545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	177	542	0	ENST00000219905.7:c.3281C>T	p.Ser1094Phe	p.S1094F	ENST00000219905	NM_001164273.1	1094	tCc/tTc																																																																															
MGA	23269	MSKCC	GRCh37	15	42042739	42042739	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1477260954		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	91	514	0	ENST00000219905.7:c.6934A>G	p.Thr2312Ala	p.T2312A	ENST00000219905	NM_001164273.1	2312	Act/Gct																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647489	3647489	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756369289		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	121	526	0	ENST00000294008.3:c.1574G>A	p.Arg525His	p.R525H	ENST00000294008	NM_032444.2	525	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828099	72828099	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	37	547	0	ENST00000268489.5:c.8482A>G	p.Thr2828Ala	p.T2828A	ENST00000268489	NM_006885.3	2828	Act/Gct																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544782	86544782	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1362905724		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	97	455	0	ENST00000262426.4:c.607G>A	p.Val203Met	p.V203M	ENST00000262426	NM_001451.2	203	Gtg/Atg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346678	89346678	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	98	576	0	ENST00000301030.4:c.6272A>G	p.Gln2091Arg	p.Q2091R	ENST00000301030	NM_001256183.1	2091	cAg/cGg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89845349	89845349	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			849	72	545	0	ENST00000389301.3:c.1776+2T>C		p.X592_splice	ENST00000389301	NM_000135.2	592																																																																																
NF1	4763	MSKCC	GRCh37	17	29556296	29556296	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	66	515	0	ENST00000358273.4:c.2663A>G	p.Asp888Gly	p.D888G	ENST00000358273	NM_001042492.2	888	gAt/gGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29557370	29557370	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	90	359	0	ENST00000358273.4:c.3083A>G	p.Asp1028Gly	p.D1028G	ENST00000358273	NM_001042492.2	1028	gAc/gGc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264348	30264353	+	inframe_deletion	In_Frame_Del	DEL	CGGCGG	CGGCGG	-			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	54	321	0	ENST00000322652.5:c.86_91del	p.Ala29_Ala30del	p.A29_A30del	ENST00000322652	NM_015355.2	28	tCGGCGGcg/tcg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492734	56492734	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	115	512	0	ENST00000407977.2:c.205T>C	p.Phe69Leu	p.F69L	ENST00000407977		69	Ttt/Ctt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761282	59761282	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	120	559	0	ENST00000259008.2:c.3125A>G	p.Glu1042Gly	p.E1042G	ENST00000259008	NM_032043.2	1042	gAa/gGa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375005	45375005	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	129	475	0	ENST00000262160.6:c.838T>C	p.Tyr280His	p.Y280H	ENST00000262160	NM_005901.5	280	Tat/Cat																																																																															
STK11	6794	MSKCC	GRCh37	19	1220481	1220481	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	122	486	0	ENST00000326873.7:c.574A>G	p.Ile192Val	p.I192V	ENST00000326873	NM_000455.4	192	Atc/Gtc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220098	5220098	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs142918634		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	130	520	0	ENST00000357368.4:c.3617G>T	p.Arg1206Leu	p.R1206L	ENST00000357368	NM_002850.3	1206	cGg/cTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262222	10262222	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	152	525	0	ENST00000340748.4:c.2070-1G>T		p.X690_splice	ENST00000340748		690																																																																																
CARM1	10498	MSKCC	GRCh37	19	11030316	11030316	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	44	480	0	ENST00000327064.4:c.1066A>G	p.Thr356Ala	p.T356A	ENST00000327064	NM_199141.1	356	Acg/Gcg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11136122	11136122	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	133	448	0	ENST00000344626.4:c.3106A>G	p.Met1036Val	p.M1036V	ENST00000344626	NM_003072.3	1036	Atg/Gtg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15297713	15297713	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	167	408	0	ENST00000263388.2:c.1927T>C	p.Cys643Arg	p.C643R	ENST00000263388	NM_000435.2	643	Tgt/Cgt																																																																															
UPF1	5976	MSKCC	GRCh37	19	18963812	18963812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	155	395	0	ENST00000262803.5:c.989C>T	p.Thr330Ile	p.T330I	ENST00000262803	NM_002911.3	330	aCt/aTt																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313432	30313432	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	135	453	0	ENST00000262643.3:c.1035del	p.Lys345AsnfsTer2	p.K345Nfs*2	ENST00000262643	NM_001238.2	344	tcA/tc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214406	36214406	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	108	417	0	ENST00000222270.7:c.3058+2T>C		p.X1020_splice	ENST00000222270	NM_014727.1	1020																																																																																
PPP2R1A	5518	MSKCC	GRCh37	19	52725352	52725352	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	86	546	0	ENST00000322088.6:c.1519G>A	p.Val507Met	p.V507M	ENST00000322088	NM_014225.5	507	Gtg/Atg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637426	47637426	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs63751444		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	149	429	0	ENST00000233146.2:c.560T>G	p.Leu187Arg	p.L187R	ENST00000233146	NM_000251.2	187	cTt/cGt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030648	48030648	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs866793892		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	140	567	0	ENST00000234420.5:c.3262T>C	p.Phe1088Leu	p.F1088L	ENST00000234420	NM_000179.2	1088	Ttc/Ctc																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631622	67631622	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1038834210		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	88	628	1	ENST00000272342.5:c.1808A>G	p.Asp603Gly	p.D603G	ENST00000272342	NM_019002.3	603	gAt/gGt																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919836	96919836	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772153618		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	156	439	0	ENST00000258439.3:c.427G>A	p.Val143Ile	p.V143I	ENST00000258439	NM_001193304.2	143	Gtc/Atc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182562	99182562	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	102	455	0	ENST00000074304.5:c.2365G>T	p.Gly789Cys	p.G789C	ENST00000074304	NM_001134224.1	789	Ggc/Tgc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158656001	158656001	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	106	445	2	ENST00000263640.3:c.5T>C	p.Val2Ala	p.V2A	ENST00000263640	NM_001105.4	2	gTa/gCa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178097266	178097266	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	117	446	0	ENST00000397062.3:c.448C>A	p.His150Asn	p.H150N	ENST00000397062	NM_006164.4	150	Cac/Aac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812237	212812237	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	76	480	0	ENST00000342788.4:c.339T>A	p.Asp113Glu	p.D113E	ENST00000342788	NM_005235.2	113	gaT/gaA																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017236	31017236	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	134	370	0	ENST00000375687.4:c.565+2T>C		p.X189_splice	ENST00000375687	NM_015338.5	189																																																																																
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62324333	62324333	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	A			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	38	553	0	ENST00000482936.1:c.2828C>A	p.Pro943His	p.P943H	ENST00000482936		943	cCc/cAc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206823	36206823	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	41	493	1	ENST00000300305.3:c.689A>G	p.Gln230Arg	p.Q230R	ENST00000300305		230	cAg/cGg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445584	29445584	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1177396156		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	147	507	0	ENST00000544604.2:c.1415A>G	p.Tyr472Cys	p.Y472C	ENST00000544604	NM_001206998.1	472	tAc/tGc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446003	29446003	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764157636		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	91	443	0	ENST00000544604.2:c.1834G>A	p.Gly612Ser	p.G612S	ENST00000544604	NM_001206998.1	612	Ggc/Agc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732950	30732950	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	148	520	0	ENST00000359013.4:c.1638G>A	p.Trp546Ter	p.W546*	ENST00000359013	NM_001024847.2	546	tgG/tgA																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936091	49936091	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	146	609	0	ENST00000296474.3:c.1579T>C	p.Cys527Arg	p.C527R	ENST00000296474	NM_002447.2	527	Tgc/Cgc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71102851	71102851	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	105	502	0	ENST00000318789.4:c.356A>G	p.Gln119Arg	p.Q119R	ENST00000318789	NM_032682.5	119	cAa/cGa																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665354	138665354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	33	473	0	ENST00000330315.3:c.211G>A	p.Ala71Thr	p.A71T	ENST00000330315	NM_023067.3	71	Gcg/Acg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55131188	55131188	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	106	425	0	ENST00000257290.5:c.731A>T	p.Asp244Val	p.D244V	ENST00000257290	NM_006206.4	244	gAc/gTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467793	66467793	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	91	456	0	ENST00000273854.3:c.476A>C	p.Asp159Ala	p.D159A	ENST00000273854	NM_004439.5	159	gAt/gCt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268161	153268161	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs746085490		P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			702	180	528	0	ENST00000281708.4:c.647A>G	p.Asn216Ser	p.N216S	ENST00000281708	NM_033632.3	216	aAt/aGt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295459	1295459	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	129	534	1				ENST00000310581	NM_198253.2																																																																																	
TERT	7015	MSKCC	GRCh37	5	1295725	1295725	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	167	534	0				ENST00000310581	NM_198253.2																																																																																	
APC	324	MSKCC	GRCh37	5	112174815	112174815	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	28	549	0	ENST00000257430.4:c.3524A>C	p.Gln1175Pro	p.Q1175P	ENST00000257430	NM_000038.5	1175	cAg/cCg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931319	131931319	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	88	403	0	ENST00000265335.6:c.2024A>T	p.Asp675Val	p.D675V	ENST00000265335		675	gAc/gTc																																																																															
IRF4	3662	MSKCC	GRCh37	6	401427	401427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	108	416	0	ENST00000380956.4:c.749G>A	p.Cys250Tyr	p.C250Y	ENST00000380956	NM_001195286.1	250	tGc/tAc																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197432	26197432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	141	607	0	ENST00000356476.2:c.47C>T	p.Ala16Val	p.A16V	ENST00000356476		16	gCg/gTg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117683870	117683870	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	64	426	0	ENST00000368508.3:c.3277A>T	p.Ile1093Phe	p.I1093F	ENST00000368508	NM_002944.2	1093	Att/Ttt																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192427	138192427	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	114	429	0	ENST00000237289.4:c.63A>G	p.Ile21Met	p.I21M	ENST00000237289	NM_001270507.1	21	atA/atG																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874419	151874419	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	235	483	0	ENST00000262189.6:c.8119del	p.Val2707LeufsTer6	p.V2707Lfs*6	ENST00000262189	NM_170606.2	2707	Gtt/tt																																																																															
NBN	4683	MSKCC	GRCh37	8	90983513	90983513	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	44	293	0	ENST00000265433.3:c.590A>T	p.Tyr197Phe	p.Y197F	ENST00000265433	NM_002485.4	197	tAc/tTc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117878862	117878862	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	107	467	0	ENST00000297338.2:c.107A>G	p.Asn36Ser	p.N36S	ENST00000297338	NM_006265.2	36	aAt/aGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341700	8341700	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	73	461	0	ENST00000356435.5:c.4940A>G	p.Glu1647Gly	p.E1647G	ENST00000356435		1647	gAa/gGa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449805	8449805	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	90	440	0	ENST00000356435.5:c.3908G>T	p.Ser1303Ile	p.S1303I	ENST00000356435		1303	aGc/aTc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139794080	139794080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			813	127	494	0	ENST00000247668.2:c.223G>A	p.Glu75Lys	p.E75K	ENST00000247668	NM_021138.3	75	Gag/Aag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44732840	44732840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	17	200	0	ENST00000377967.4:c.43G>A	p.Ala15Thr	p.A15T	ENST00000377967	NM_021140.2	15	Gcc/Acc																																																																															
PHF6	84295	MSKCC	GRCh37	X	133549116	133549116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	97	187	0	ENST00000332070.3:c.800C>T	p.Thr267Ile	p.T267I	ENST00000332070	NM_032458.2	267	aCt/aTt																																																																															
AR	367	MSKCC	GRCh37	X	66765171	66765172	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAA			P-0068503-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	14	160	0	ENST00000374690.3:c.185_186insACA	p.Gln80dup	p.Q80dup	ENST00000374690	NM_000044.3	80	-/CAA																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343540	343540	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	20	570	0	ENST00000262320.3:c.2134C>T	p.Arg712Ter	p.R712*	ENST00000262320	NM_003502.3	712	Cga/Tga																																																																															
CUL3	8452	MSKCC	GRCh37	2	225368458	225368458	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1312027878		P-0068505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	346	421	0	ENST00000264414.4:c.1288C>T	p.Arg430Cys	p.R430C	ENST00000264414	NM_003590.4	430	Cgt/Tgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971057	21971058	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	607	570	0	ENST00000304494.5:c.300dup	p.Gly101ArgfsTer19	p.G101Rfs*19	ENST00000304494	NM_000077.4	100	-/C																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52584529	52584531	+	inframe_deletion	In_Frame_Del	DEL	TGG	TGG	-			P-0068505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	413	601	0	ENST00000394830.3:c.4482_4484del	p.Gln1495del	p.Q1495del	ENST00000394830	NM_018313.4	1494	acCCAg/acg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306790	41306790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	348	508	0	ENST00000373198.4:c.869C>A	p.Thr290Lys	p.T290K	ENST00000373198	NM_133170.3	290	aCg/aAg																																																																															
NF1	4763	MSKCC	GRCh37	17	29685534	29685553	+	frameshift_variant	Frame_Shift_Del	DEL	ATCATTGTGCCAAGATCCAA	ATCATTGTGCCAAGATCCAA	-			P-0068505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	311	507	0	ENST00000358273.4:c.8009_8028del	p.Ser2670PhefsTer16	p.S2670Ffs*16	ENST00000358273	NM_001042492.2	2669	ttATCATTGTGCCAAGATCCAAat/ttat																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422752	47422761	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGACAAGT	AAAGACAAGT	-			P-0068505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	360	505	0	ENST00000404338.3:c.821_830del	p.Lys274MetfsTer5	p.K274Mfs*5	ENST00000404338	NM_004491.4	274	AAAGACAAGTat/at																																																																															
GATA1	2623	MSKCC	GRCh37	X	48649626	48649626	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	398	290	0	ENST00000376670.3:c.110G>T	p.Gly37Val	p.G37V	ENST00000376670	NM_002049.3	37	gGg/gTg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391151	89391151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	320	491	0	ENST00000336596.2:c.1217C>A	p.Thr406Asn	p.T406N	ENST00000336596	NM_005233.5	406	aCc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577585	7577587	+	missense_variant	Missense_Mutation	ONP	GAT	GAT	AAA			P-0068505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	352	528	0	ENST00000269305.4:c.694_696delinsTTT	p.Ile232Phe	p.I232F	ENST00000269305	NM_001126112.2	232	ATC/TTT																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115966	8115967	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0068508-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	56	492	0	ENST00000346208.3:c.1313_1314dup	p.Val439TrpfsTer37	p.V439Wfs*37	ENST00000346208		438	atg/aTGtg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467833	66467833	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068508-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	54	412	0	ENST00000273854.3:c.436A>G	p.Thr146Ala	p.T146A	ENST00000273854	NM_004439.5	146	Acc/Gcc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143130141	143130141	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068508-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	38	351	0	ENST00000262992.4:c.875A>G	p.His292Arg	p.H292R	ENST00000262992	NM_001101669.1	292	cAt/cGt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1177782647		P-0063354-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			646	113	502	0	ENST00000326873.7:c.842dup	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggCc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2207627	2207627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063354-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			512	130	408	0	ENST00000398665.3:c.911C>T	p.Ser304Leu	p.S304L	ENST00000398665	NM_032482.2	304	tCg/tTg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156837895	156837895	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0063354-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			720	78	447	0	ENST00000524377.1:c.429-1G>T		p.X143_splice	ENST00000524377	NM_002529.3	143																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0063354-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	61	264	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602928	10602928	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063354-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			540	130	394	0	ENST00000171111.5:c.650A>C	p.Gln217Pro	p.Q217P	ENST00000171111	NM_203500.1	217	cAa/cCa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65311199	65311199	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0063354-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			536	66	359	0	ENST00000342505.4:c.2112C>G	p.Tyr704Ter	p.Y704*	ENST00000342505	NM_002227.2	704	taC/taG																																																																															
ELF3	1999	MSKCC	GRCh37	1	201980328	201980328	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063354-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			673	77	527	0	ENST00000359651.3:c.64G>T	p.Glu22Ter	p.E22*	ENST00000359651		22	Gag/Tag																																																																															
AKT1	207	MSKCC	GRCh37	14	105242002	105242002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063354-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			527	43	374	0	ENST00000349310.3:c.422C>T	p.Pro141Leu	p.P141L	ENST00000349310	NM_001014432.1	141	cCc/cTc																																																																															
POT1	25913	MSKCC	GRCh37	7	124491940	124491940	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063354-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	35	260	0	ENST00000357628.3:c.935A>T	p.Asp312Val	p.D312V	ENST00000357628	NM_015450.2	312	gAc/gTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11129701	11129701	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0063354-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			564	101	425	0	ENST00000344626.4:c.2505+2T>C		p.X835_splice	ENST00000344626	NM_003072.3	835																																																																																
TRAF7	84231	MSKCC	GRCh37	16	2223201	2223201	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063354-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			647	74	454	0	ENST00000326181.6:c.813C>A	p.Asn271Lys	p.N271K	ENST00000326181	NM_032271.2	271	aaC/aaA																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440643	56440643	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139557480		P-0066259-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	29	474	0	ENST00000407977.2:c.575C>T	p.Pro192Leu	p.P192L	ENST00000407977		192	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0066259-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	147	472	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																															
HGF	3082	MSKCC	GRCh37	7	81372752	81372752	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768451705		P-0066259-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	41	413	0	ENST00000222390.5:c.782G>A	p.Arg261His	p.R261H	ENST00000222390	NM_000601.4	261	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0066259-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	181	300	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991522	72991522	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066259-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	67	389	0	ENST00000268489.5:c.2523G>T	p.Gln841His	p.Q841H	ENST00000268489	NM_006885.3	841	caG/caT																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249312	110249312	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066259-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	59	382	0	ENST00000374672.4:c.1261A>G	p.Thr421Ala	p.T421A	ENST00000374672	NM_004235.4	421	Aca/Gca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970985	21970997	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGATGGCCCAG	CGCGATGGCCCAG	-			P-0066259-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	64	592	0	ENST00000304494.5:c.361_373del	p.Leu121MetfsTer21	p.L121Mfs*21	ENST00000304494	NM_000077.4	121	CTGGGCCATCGCGat/at																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0067133-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			433	116	328	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																															
PGR	5241	MSKCC	GRCh37	11	100998508	100998508	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067133-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			268	40	374	0	ENST00000325455.5:c.1294T>A	p.Ser432Thr	p.S432T	ENST00000325455	NM_001202474.3	432	Tcc/Acc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405851	157405851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067133-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			478	75	421	0	ENST00000346085.5:c.2093C>T	p.Ser698Leu	p.S698L	ENST00000346085	NM_020732.3	698	tCa/tTa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0067599-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			652	58	248	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197834	123197834	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0067599-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			455	45	228	0	ENST00000218089.9:c.1958C>G	p.Ser653Ter	p.S653*	ENST00000218089	NM_001042749.1	653	tCa/tGa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271747	15271747	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067599-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			742	69	461	0	ENST00000263388.2:c.6692del	p.Pro2231GlnfsTer15	p.P2231Qfs*15	ENST00000263388	NM_000435.2	2231	cCa/ca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714387	40714387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067599-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			591	107	353	0	ENST00000373198.4:c.4010G>T	p.Arg1337Leu	p.R1337L	ENST00000373198	NM_133170.3	1337	cGc/cTc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45796223	45796223	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781668		P-0067599-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			544	71	269	0	ENST00000372115.3:c.1441C>T	p.Arg481Cys	p.R481C	ENST00000372115	NM_001048171.1	481	Cgt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257668	16257668	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs541126378		P-0067599-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			693	64	385	0	ENST00000375759.3:c.4933G>A	p.Val1645Ile	p.V1645I	ENST00000375759	NM_015001.2	1645	Gta/Ata																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0067599-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	120	228	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230486756	230486756	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375905173		P-0067599-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			717	52	313	0	ENST00000525115.1:c.635G>A	p.Arg212Gln	p.R212Q	ENST00000525115		212	cGg/cAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992384	72992384	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067599-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			701	71	376	0	ENST00000268489.5:c.1661C>G	p.Ser554Cys	p.S554C	ENST00000268489	NM_006885.3	554	tCt/tGt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37649054	37649054	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067599-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			555	169	304	0	ENST00000447079.4:c.2159G>T	p.Gly720Val	p.G720V	ENST00000447079	NM_015083.1	720	gGg/gTg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446637	29446637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067599-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			563	51	359	0	ENST00000544604.2:c.2468G>T	p.Arg823Leu	p.R823L	ENST00000544604	NM_001206998.1	823	cGg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743858	40743858	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067599-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			441	91	275	0	ENST00000373198.4:c.3137G>T	p.Arg1046Leu	p.R1046L	ENST00000373198	NM_133170.3	1046	cGc/cTc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643821	38643821	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0067599-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			516	49	335	0	ENST00000299084.4:c.1291G>T	p.Glu431Ter	p.E431*	ENST00000299084	NM_152594.2	431	Gag/Tag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31448715	31448716	+	splice_acceptor_variant	Splice_Site	DNP	CT	CT	TA			P-0067599-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			497	182	235	2	ENST00000344624.3:c.2822-2_2822-1delinsTA		p.X941_splice	ENST00000344624		941																																																																																
EIF1AX	1964	MSKCC	GRCh37	X	20153892	20153892	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067599-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	38	166	0	ENST00000379607.5:c.168G>C	p.Lys56Asn	p.K56N	ENST00000379607	NM_001412.3	56	aaG/aaC																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075179	16075179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067599-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			555	49	323	0	ENST00000268712.3:c.373G>A	p.Ala125Thr	p.A125T	ENST00000268712	NM_006311.3	125	Gcg/Acg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781307	9781307	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0067599-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			440	46	324	0	ENST00000377346.4:c.1811+1G>A		p.X604_splice	ENST00000377346	NM_005026.3	604																																																																																
RBM10	8241	MSKCC	GRCh37	X	47034479	47034479	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067599-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			438	95	277	0	ENST00000329236.7:c.334del	p.Glu112LysfsTer77	p.E112Kfs*77	ENST00000329236	NM_001204466.1	111	atG/at																																																																															
ERF	2077	MSKCC	GRCh37	19	42753671	42753671	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0067599-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			746	70	415	0	ENST00000222329.4:c.593A>T	p.Glu198Val	p.E198V	ENST00000222329	NM_006494.2	198	gAa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0068060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			187	39	513	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591121	67591121	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1390357148		P-0068060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			54	12	345	0	ENST00000274335.5:c.1714C>T	p.Gln572Ter	p.Q572*	ENST00000274335		572	Cag/Tag																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986940	36986941	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0068060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			129	49	432	0	ENST00000354822.5:c.747_748dup	p.Ala250GlyfsTer46	p.A250Gfs*46	ENST00000354822	NM_001079668.2	250	gcc/gGGcc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385197	41385197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			154	15	391	0	ENST00000373198.4:c.764C>T	p.Ala255Val	p.A255V	ENST00000373198	NM_133170.3	255	gCa/gTa																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266735	18266735	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80233027		P-0068436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	67	417	1	ENST00000222254.8:c.46C>T	p.Arg16Cys	p.R16C	ENST00000222254	NM_005027.3	16	Cgc/Tgc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044700	47044700	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0068436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			762	97	544	0	ENST00000329236.7:c.1867-1G>T		p.X623_splice	ENST00000329236	NM_001204466.1	623																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0068436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	37	243	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526603	106526603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	46	252	0	ENST00000359195.3:c.2896G>T	p.Gly966Trp	p.G966W	ENST00000359195	NM_002649.2	966	Ggg/Tgg																																																																															
POLE	5426	MSKCC	GRCh37	12	133219916	133219916	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0068436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	42	436	0	ENST00000320574.5:c.4445G>T	p.Gly1482Val	p.G1482V	ENST00000320574	NM_006231.2	1482	gGg/gTg																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158515	26158515	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	64	330	0	ENST00000289316.2:c.118G>C	p.Val40Leu	p.V40L	ENST00000289316	NM_138720.2	40	Gtg/Ctg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123215325	123215325	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	27	243	0	ENST00000218089.9:c.2871A>C	p.Leu957Phe	p.L957F	ENST00000218089	NM_001042749.1	957	ttA/ttC																																																																															
ALK	238	MSKCC	GRCh37	2	30143134	30143134	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068436-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	63	461	0	ENST00000389048.3:c.392C>A	p.Ser131Tyr	p.S131Y	ENST00000389048	NM_004304.4	131	tCc/tAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0068442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	140	324	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578440	7578440	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0068442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			19	447	439	0	ENST00000269305.4:c.490A>T	p.Lys164Ter	p.K164*	ENST00000269305	NM_001126112.2	164	Aag/Tag																																																																															
KDR	3791	MSKCC	GRCh37	4	55946283	55946283	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0068442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			828	231	392	0	ENST00000263923.4:c.3896C>G	p.Ser1299Ter	p.S1299*	ENST00000263923	NM_002253.2	1299	tCa/tGa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258986	16258986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068442-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	219	400	0	ENST00000375759.3:c.6251G>A	p.Arg2084Lys	p.R2084K	ENST00000375759	NM_015001.2	2084	aGg/aAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0068443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	22	300	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713723	30713724	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0068443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	28	501	0	ENST00000359013.4:c.1123_1124del	p.Leu375GlyfsTer14	p.L375Gfs*14	ENST00000359013	NM_001024847.2	375	CTg/g																																																																															
CDH1	999	MSKCC	GRCh37	16	68835718	68835718	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	124	352	0	ENST00000261769.5:c.309G>A	p.Trp103Ter	p.W103*	ENST00000261769	NM_004360.3	103	tgG/tgA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	20	323	0	ENST00000263967.3:c.331A>C	p.Lys111Gln	p.K111Q	ENST00000263967	NM_006218.2	111	Aag/Cag																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112745421	112745421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	72	282	0	ENST00000369452.4:c.739C>T	p.His247Tyr	p.H247Y	ENST00000369452	NM_007373.3	247	Cac/Tac																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961381	54961381	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs45533839		P-0068447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	73	206	0	ENST00000312783.6:c.251T>C	p.Val84Ala	p.V84A	ENST00000312783	NM_198436.1	84	gTa/gCa																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30133179	30133179	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			758	127	319	0	ENST00000263025.4:c.319C>G	p.Leu107Val	p.L107V	ENST00000263025	NM_002746.2	107	Ctg/Gtg																																																																															
IRF4	3662	MSKCC	GRCh37	6	398843	398843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	115	280	0	ENST00000380956.4:c.653G>A	p.Gly218Glu	p.G218E	ENST00000380956	NM_001195286.1	218	gGa/gAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952151	178952154	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	INS	GAAA	GAAA	TTTTC			P-0068447-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	90	313	0	ENST00000263967.3:c.3206_*2delinsTTTTC		p.*1069*	ENST00000263967	NM_006218.2	1069																																																																																
MYC	4609	MSKCC	GRCh37	8	128752803	128752803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	813	553	0	ENST00000377970.2:c.964C>T	p.His322Tyr	p.H322Y	ENST00000377970	NM_002467.4	322	Cac/Tac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602763	10602763	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs774469695		P-0068452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	719	540	0	ENST00000171111.5:c.815G>T	p.Arg272Leu	p.R272L	ENST00000171111	NM_203500.1	272	cGc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0068452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	151	320	1	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
ATR	545	MSKCC	GRCh37	3	142272523	142272523	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	255	412	0	ENST00000350721.4:c.2592G>T	p.Glu864Asp	p.E864D	ENST00000350721	NM_001184.3	864	gaG/gaT																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459525	50459525	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	224	415	0	ENST00000331340.3:c.814G>T	p.Ala272Ser	p.A272S	ENST00000331340	NM_006060.4	272	Gcc/Tcc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276224	15276224	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	303	486	0	ENST00000263388.2:c.5770G>C	p.Glu1924Gln	p.E1924Q	ENST00000263388	NM_000435.2	1924	Gag/Cag																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149433647	149433647	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	229	394	0	ENST00000286301.3:c.2904C>A	p.Asn968Lys	p.N968K	ENST00000286301	NM_005211.3	968	aaC/aaA																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472461	88472461	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	270	569	0	ENST00000360948.2:c.2094C>A	p.Phe698Leu	p.F698L	ENST00000360948	NM_001012338.2	698	ttC/ttA																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892175	9892175	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	158	593	0	ENST00000330684.3:c.2315A>T	p.Lys772Met	p.K772M	ENST00000330684	NM_001134407.1	772	aAg/aTg																																																																															
ATM	472	MSKCC	GRCh37	11	108098548	108098549	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0068452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	192	474	0	ENST00000278616.4:c.120dup	p.Lys41Ter	p.K41*	ENST00000278616	NM_000051.3	40	att/aTtt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94209455	94209455	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0068452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	170	314	0	ENST00000323929.3:c.659G>T	p.Arg220Met	p.R220M	ENST00000323929	NM_005591.3	220	aGg/aTg																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112745425	112745425	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	201	414	0	ENST00000369452.4:c.743A>G	p.Asn248Ser	p.N248S	ENST00000369452	NM_007373.3	248	aAt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			589	93	451	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123480499	123480499	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs148554414		P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			461	91	327	0	ENST00000371139.4:c.7G>T	p.Ala3Ser	p.A3S	ENST00000371139	NM_001114937.2	3	Gca/Tca																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127387	55127387	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			587	76	492	0	ENST00000257290.5:c.175T>A	p.Tyr59Asn	p.Y59N	ENST00000257290	NM_006206.4	59	Tac/Aac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112074	115112074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			526	143	499	0	ENST00000257566.3:c.1666C>A	p.Leu556Met	p.L556M	ENST00000257566	NM_016569.3	556	Ctg/Atg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909490	50909490	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774130423		P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			650	73	517	2	ENST00000440232.2:c.1294C>T	p.Arg432Trp	p.R432W	ENST00000440232	NM_002691.3	432	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			332	166	308	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
HGF	3082	MSKCC	GRCh37	7	81332070	81332070	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			330	62	301	0	ENST00000222390.5:c.2014del	p.Asp672IlefsTer13	p.D672Ifs*13	ENST00000222390	NM_000601.4	672	Gat/at																																																																															
USP8	9101	MSKCC	GRCh37	15	50784990	50784990	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs146125856		P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			320	19	235	0	ENST00000307179.4:c.2327T>C	p.Leu776Pro	p.L776P	ENST00000307179		776	cTt/cCt																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798120	45798120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			671	42	559	0	ENST00000372115.3:c.689G>T	p.Cys230Phe	p.C230F	ENST00000372115	NM_001048171.1	230	tGc/tTc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678344	88678344	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			543	32	419	0	ENST00000360948.2:c.1192G>T	p.Glu398Ter	p.E398*	ENST00000360948	NM_001012338.2	398	Gag/Tag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696465	47696465	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			611	45	479	0	ENST00000347630.2:c.358C>G	p.Gln120Glu	p.Q120E	ENST00000347630	NM_001007230.1	120	Caa/Gaa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522599	67522605	+	frameshift_variant	Frame_Shift_Del	DEL	GAATAAA	GAATAAA	-			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			499	94	393	0	ENST00000274335.5:c.97_103del	p.Asn33GlyfsTer3	p.N33Gfs*3	ENST00000274335		32	gtGAATAAA/gt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012357	29012358	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			334	57	301	0	ENST00000282397.4:c.513_513+1delinsTT		p.X171_splice	ENST00000282397	NM_002019.4	171																																																																																
RECQL	5965	MSKCC	GRCh37	12	21639478	21639478	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			270	70	298	0	ENST00000421138.2:c.436G>C	p.Asp146His	p.D146H	ENST00000421138		146	Gac/Cac																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865749	57865749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			797	127	516	0	ENST00000228682.2:c.3226C>A	p.Pro1076Thr	p.P1076T	ENST00000228682	NM_005269.2	1076	Cct/Act																																																																															
CENPA	1058	MSKCC	GRCh37	2	27015673	27015673	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			717	87	454	0	ENST00000335756.4:c.260A>T	p.Gln87Leu	p.Q87L	ENST00000335756	NM_001809.3	87	cAa/cTa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115831	8115832	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			580	62	410	2	ENST00000346208.3:c.1177_1178delinsAA	p.Pro393Lys	p.P393K	ENST00000346208		393	CCg/AAg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163566	47163566	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	62	352	0	ENST00000409792.3:c.2560C>T	p.Gln854Ter	p.Q854*	ENST00000409792	NM_014159.6	854	Cag/Tag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865108	57865108	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			722	72	427	1	ENST00000228682.2:c.2585C>A	p.Ser862Ter	p.S862*	ENST00000228682	NM_005269.2	862	tCa/tAa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44928980	44928980	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			421	75	316	0	ENST00000377967.4:c.2080G>T	p.Ala694Ser	p.A694S	ENST00000377967	NM_021140.2	694	Gct/Tct																																																																															
TET1	80312	MSKCC	GRCh37	10	70446111	70446111	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	73	291	0	ENST00000373644.4:c.5053-2A>G		p.X1685_splice	ENST00000373644	NM_030625.2	1685																																																																																
PREX2	80243	MSKCC	GRCh37	8	69028073	69028073	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			434	56	420	0	ENST00000288368.4:c.3232G>T	p.Gly1078Ter	p.G1078*	ENST00000288368	NM_024870.2	1078	Gga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573665	48573702	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTTAGTCTTATAAGAGTTTTTCTATACCCTCTATGGT	GGTTAGTCTTATAAGAGTTTTTCTATACCCTCTATGGT	-			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			316	54	361	0	ENST00000342988.3:c.249+2_249+39del		p.X83_splice	ENST00000342988	NM_005359.5	83																																																																																
PARK2	5071	MSKCC	GRCh37	6	162206892	162206892	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			556	84	442	0	ENST00000366898.1:c.783A>T	p.Leu261Phe	p.L261F	ENST00000366898	NM_004562.2	261	ttA/ttT																																																																															
RET	5979	MSKCC	GRCh37	10	43622086	43622086	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			552	81	437	0	ENST00000355710.3:c.3103G>T	p.Glu1035Ter	p.E1035*	ENST00000355710	NM_020975.4	1035	Gag/Tag																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137524818	137524818	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			349	53	303	0	ENST00000367739.4:c.551A>C	p.Gln184Pro	p.Q184P	ENST00000367739	NM_000416.2	184	cAg/cCg																																																																															
MET	4233	MSKCC	GRCh37	7	116339492	116339492	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			551	124	435	0	ENST00000397752.3:c.354G>T	p.Met118Ile	p.M118I	ENST00000397752	NM_000245.2	118	atG/atT																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42842656	42842656	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			476	78	384	0	ENST00000398585.3:c.1201G>T	p.Val401Leu	p.V401L	ENST00000398585	NM_001135099.1	401	Gtg/Ttg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942068	81942068	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			603	67	433	0	ENST00000359376.3:c.1605G>T	p.Lys535Asn	p.K535N	ENST00000359376	NM_002661.3	535	aaG/aaT																																																																															
ATR	545	MSKCC	GRCh37	3	142272159	142272160	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0068453-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			435	69	363	1	ENST00000350721.4:c.2714_2715delinsTT	p.Gly905Val	p.G905V	ENST00000350721	NM_001184.3	905	gGA/gTT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578242	7578242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	35	216	0	ENST00000269305.4:c.607G>T	p.Val203Leu	p.V203L	ENST00000269305	NM_001126112.2	203	Gtg/Ttg																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	46	166	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																																																															
EZH2	2146	MSKCC	GRCh37	7	148511155	148511155	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	20	170	0	ENST00000320356.2:c.1747C>T	p.Arg583Ter	p.R583*	ENST00000320356	NM_004456.4	583	Cga/Tga																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206666636	206666636	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782318549		P-0068476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	18	213	0	ENST00000367120.3:c.1970G>A	p.Arg657Gln	p.R657Q	ENST00000367120	NM_014002.3	657	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0068476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	26	114	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PMS2	5395	MSKCC	GRCh37	7	6036994	6036994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	15	117	0	ENST00000265849.7:c.766G>A	p.Gly256Ser	p.G256S	ENST00000265849	NM_000535.5	256	Ggt/Agt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057638	180057638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	45	220	0	ENST00000261937.6:c.317C>T	p.Thr106Ile	p.T106I	ENST00000261937	NM_182925.4	106	aCa/aTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435948	49435948	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	24	225	0	ENST00000301067.7:c.6033G>T	p.Glu2011Asp	p.E2011D	ENST00000301067	NM_003482.3	2011	gaG/gaT																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350593	15350593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	29	181	0	ENST00000263377.2:c.3322G>A	p.Val1108Met	p.V1108M	ENST00000263377	NM_058243.2	1108	Gtg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0067542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			339	143	319	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882025		P-0067542-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			435	126	488	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098816	178098816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	173	456	0	ENST00000397062.3:c.229G>C	p.Asp77His	p.D77H	ENST00000397062	NM_006164.4	77	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs587782082		P-0068240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	167	370	0	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg																																																																															
HGF	3082	MSKCC	GRCh37	7	81374398	81374398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	124	323	0	ENST00000222390.5:c.664C>A	p.Leu222Ile	p.L222I	ENST00000222390	NM_000601.4	222	Ctc/Atc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740288	162740288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	168	476	0	ENST00000367921.3:c.1490G>T	p.Gly497Val	p.G497V	ENST00000367921	NM_006182.2	497	gGg/gTg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149505117	149505117	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	190	440	0	ENST00000261799.4:c.1698G>A	p.Trp566Ter	p.W566*	ENST00000261799	NM_002609.3	566	tgG/tgA																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111520	8111521	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0068240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	102	384	0	ENST00000346208.3:c.1006_1007delinsAA	p.Pro336Asn	p.P336N	ENST00000346208		336	CCt/AAt																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719733	190719733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	181	377	0	ENST00000441310.2:c.1735G>T	p.Ala579Ser	p.A579S	ENST00000441310	NM_000534.4	579	Gct/Tct																																																																															
WT1	7490	MSKCC	GRCh37	11	32417801	32417801	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0068240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	110	343	0	ENST00000332351.3:c.1249+2T>C		p.X417_splice	ENST00000332351	NM_024426.4	417																																																																																
BRCA2	675	MSKCC	GRCh37	13	32911293	32911293	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	94	418	0	ENST00000380152.3:c.2801G>T	p.Gly934Val	p.G934V	ENST00000380152		934	gGt/gTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11100069	11100069	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0068240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			81	219	498	0	ENST00000344626.4:c.1195A>T	p.Lys399Ter	p.K399*	ENST00000344626	NM_003072.3	399	Aaa/Taa																																																																															
FH	2271	MSKCC	GRCh37	1	241682982	241682983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	103	392	0	ENST00000366560.3:c.40dup	p.Leu14ProfsTer42	p.L14Pfs*42	ENST00000366560	NM_000143.3	14	ctc/cCtc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151842344	151842344	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs749571160		P-0068317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	51	322	2	ENST00000262189.6:c.14068C>T	p.Arg4690Ter	p.R4690*	ENST00000262189	NM_170606.2	4690	Cga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484212	8484212	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	31	368	0	ENST00000356435.5:c.3320T>C	p.Val1107Ala	p.V1107A	ENST00000356435		1107	gTa/gCa																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150902505	150902505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	31	321	0	ENST00000271640.5:c.323G>A	p.Arg108Gln	p.R108Q	ENST00000271640	NM_001145415.1	108	cGg/cAg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852460	63852460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	22	410	0	ENST00000279873.7:c.3238G>A	p.Gly1080Ser	p.G1080S	ENST00000279873	NM_032199.2	1080	Ggt/Agt																																																																															
ALK	238	MSKCC	GRCh37	2	29446314	29446314	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	23	513	0	ENST00000389048.3:c.3253A>T	p.Thr1085Ser	p.T1085S	ENST00000389048	NM_004304.4	1085	Acc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0068366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	51	560	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
JAK3	3718	MSKCC	GRCh37	19	17950412	17950412	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs573731097		P-0068366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	34	426	0	ENST00000458235.1:c.1315C>T	p.Leu439Phe	p.L439F	ENST00000458235	NM_000215.3	439	Ctt/Ttt																																																																															
ALK	238	MSKCC	GRCh37	2	29443584	29443606	+	frameshift_variant	Frame_Shift_Del	DEL	GGTCTCTCGGAGGAAGGACTTGA	GGTCTCTCGGAGGAAGGACTTGA	-			P-0068366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	48	480	0	ENST00000389048.3:c.3611_3633del	p.Leu1204ProfsTer73	p.L1204Pfs*73	ENST00000389048	NM_004304.4	1204	cTCAAGTCCTTCCTCCGAGAGACC/c																																																																															
RB1	5925	MSKCC	GRCh37	13	48941638	48941638	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068366-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	73	251	0	ENST00000267163.4:c.948del	p.Leu317PhefsTer15	p.L317Ffs*15	ENST00000267163	NM_000321.2	316	aaT/aa																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66511713	66511713	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			71	83	355	1	ENST00000358598.2:c.173A>T	p.Glu58Val	p.E58V	ENST00000358598	NM_212471.2	58	gAg/gTg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1955063	1955063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			66	106	426	0	ENST00000382895.3:c.2150G>A	p.Cys717Tyr	p.C717Y	ENST00000382895	NM_133330.2	717	tGt/tAt																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29442846	29442846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	133	431	0	ENST00000544604.2:c.887G>A	p.Cys296Tyr	p.C296Y	ENST00000544604	NM_001206998.1	296	tGt/tAt																																																																															
RB1	5925	MSKCC	GRCh37	13	48941703	48941703	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			36	77	247	0	ENST00000267163.4:c.1013A>G	p.Asp338Gly	p.D338G	ENST00000267163	NM_000321.2	338	gAt/gGt																																																																															
MED12	9968	MSKCC	GRCh37	X	70342404	70342404	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	156	494	0	ENST00000374080.3:c.1295G>C	p.Gly432Ala	p.G432A	ENST00000374080		432	gGa/gCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			47	23	272	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	332	522	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27059194	27059194	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	101	341	0	ENST00000324856.7:c.1831C>T	p.Gln611Ter	p.Q611*	ENST00000324856	NM_006015.4	611	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874147	151874148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs771193709		P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	50	512	5	ENST00000262189.6:c.8390dup	p.Glu2798GlyfsTer11	p.E2798Gfs*11	ENST00000262189	NM_170606.2	2797	aag/aaAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961818	15961818	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs542449256		P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	117	459	1	ENST00000268712.3:c.5977C>T	p.Gln1993Ter	p.Q1993*	ENST00000268712	NM_006311.3	1993	Cag/Tag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233111	46233111	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	66	374	0	ENST00000334344.6:c.1331-1G>C		p.X444_splice	ENST00000334344	NM_152641.2	444																																																																																
SLX4	84464	MSKCC	GRCh37	16	3640028	3640028	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	137	497	0	ENST00000294008.3:c.3611C>A	p.Ser1204Tyr	p.S1204Y	ENST00000294008	NM_032444.2	1204	tCc/tAc																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239786	31239786	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs769594453		P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	187	407	0	ENST00000376228.5:c.63G>C	p.Glu21Asp	p.E21D	ENST00000376228	NM_002117.5	21	gaG/gaC																																																																															
SPOP	8405	MSKCC	GRCh37	17	47679261	47679261	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	118	389	0	ENST00000347630.2:c.946C>G	p.Gln316Glu	p.Q316E	ENST00000347630	NM_001007230.1	316	Cag/Gag																																																																															
CCNE1	898	MSKCC	GRCh37	19	30314613	30314613	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	139	488	0	ENST00000262643.3:c.1162C>A	p.Pro388Thr	p.P388T	ENST00000262643	NM_001238.2	388	Cct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7578242	7578242	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			70	149	570	0	ENST00000269305.4:c.607del	p.Val203TrpfsTer44	p.V203Wfs*44	ENST00000269305	NM_001126112.2	203	Gtg/tg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128206865	128206865	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	79	398	0	ENST00000265960.3:c.1358T>G	p.Phe453Cys	p.F453C	ENST00000265960	NM_001006617.1	453	tTt/tGt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224280	36224280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs907427931		P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	141	468	0	ENST00000222270.7:c.6830G>A	p.Arg2277His	p.R2277H	ENST00000222270	NM_014727.1	2277	cGc/cAc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123239387	123239387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	110	417	0	ENST00000358487.5:c.2450G>T	p.Gly817Val	p.G817V	ENST00000358487	NM_000141.4	817	gGc/gTc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99482493	99482493	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	145	441	0	ENST00000268035.6:c.3361G>T	p.Asp1121Tyr	p.D1121Y	ENST00000268035	NM_000875.3	1121	Gac/Tac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962786	2962786	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	95	335	0	ENST00000396946.4:c.2122G>T	p.Glu708Ter	p.E708*	ENST00000396946	NM_032415.4	708	Gag/Tag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426678	212426678	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	115	568	0	ENST00000342788.4:c.2437G>C	p.Asp813His	p.D813H	ENST00000342788	NM_005235.2	813	Gat/Cat																																																																															
PALB2	79728	MSKCC	GRCh37	16	23637559	23637559	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	121	356	0	ENST00000261584.4:c.2746G>A	p.Glu916Lys	p.E916K	ENST00000261584	NM_024675.3	916	Gag/Aag																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197085	26197085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	198	630	0	ENST00000356476.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000356476		132	Cgt/Tgt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307484	118307484	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	119	392	0	ENST00000534358.1:c.257C>A	p.Ser86Ter	p.S86*	ENST00000534358	NM_005933.3	86	tCg/tAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410745	63410745	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			63	100	522	0	ENST00000330258.3:c.2422A>T	p.Thr808Ser	p.T808S	ENST00000330258	NM_152424.3	808	Acc/Tcc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47635695	47635695	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	45	352	0	ENST00000233146.2:c.366+1G>C		p.X122_splice	ENST00000233146	NM_000251.2	122																																																																																
TNFRSF14	8764	MSKCC	GRCh37	1	2491348	2491348	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1310989468		P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	158	518	0	ENST00000355716.4:c.391G>A	p.Asp131Asn	p.D131N	ENST00000355716	NM_003820.2	131	Gac/Aac																																																																															
TAP1	6890	MSKCC	GRCh37	6	32813467	32813467	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	141	435	0	ENST00000354258.4:c.2316C>G	p.Ile772Met	p.I772M	ENST00000354258	NM_000593.5	772	atC/atG																																																																															
FANCA	2175	MSKCC	GRCh37	16	89839718	89839718	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	173	456	0	ENST00000389301.3:c.1975G>C	p.Glu659Gln	p.E659Q	ENST00000389301	NM_000135.2	659	Gag/Cag																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73110178	73110178	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			35	59	271	0	ENST00000356692.5:c.386T>C	p.Val129Ala	p.V129A	ENST00000356692		129	gTg/gCg																																																																															
IRF4	3662	MSKCC	GRCh37	6	394958	394958	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	151	479	0	ENST00000380956.4:c.354C>G	p.Ile118Met	p.I118M	ENST00000380956	NM_001195286.1	118	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0060003-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			714	62	521	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910335	29910335	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200058378		P-0060003-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	69	419	0	ENST00000376809.5:c.5C>T	p.Ala2Val	p.A2V	ENST00000376809	NM_002116.7	2	gCc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0060003-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	49	281	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0062608-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			58	174	594	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																																																															
PPARG	5468	MSKCC	GRCh37	3	12447410	12447410	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766913119		P-0062608-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			291	166	588	0	ENST00000287820.6:c.649G>A	p.Glu217Lys	p.E217K	ENST00000287820	NM_015869.4	217	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199454	16199454	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062608-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			160	192	594	0	ENST00000375759.3:c.227C>A	p.Thr76Lys	p.T76K	ENST00000375759	NM_015001.2	76	aCg/aAg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244217	46244217	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062608-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	23	649	0	ENST00000334344.6:c.2311C>G	p.Gln771Glu	p.Q771E	ENST00000334344	NM_152641.2	771	Cag/Gag																																																																															
TET2	54790	MSKCC	GRCh37	4	106156492	106156492	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062608-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			152	178	647	0	ENST00000380013.4:c.1393C>G	p.Pro465Ala	p.P465A	ENST00000380013	NM_001127208.2	465	Cca/Gca																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633109	3633109	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062608-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			192	63	578	0	ENST00000294008.3:c.5142G>C	p.Leu1714Phe	p.L1714F	ENST00000294008	NM_032444.2	1714	ttG/ttC																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932848	39932848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062608-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			33	173	358	0	ENST00000378444.4:c.1751G>A	p.Ser584Asn	p.S584N	ENST00000378444	NM_001123385.1	584	aGc/aAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0064523-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			239	112	250	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0064523-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			253	203	548	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527973	103527973	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0064523-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			460	74	454	0	ENST00000355739.4:c.3281C>G	p.Ser1094Ter	p.S1094*	ENST00000355739	NM_000123.3	1094	tCa/tGa																																																																															
MET	4233	MSKCC	GRCh37	7	116411952	116411980	+	frameshift_variant	Frame_Shift_Del	DEL	TTTGGATAGGCTTGTAAGTGCCCGAAGTG	TTTGGATAGGCTTGTAAGTGCCCGAAGTG	-			P-0064523-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			366	262	574	0	ENST00000397752.3:c.2938_2966del	p.Leu980LysfsTer10	p.L980Kfs*10	ENST00000397752	NM_000245.2	979	caTTTGGATAGGCTTGTAAGTGCCCGAAGTGta/cata																																																																															
WT1	7490	MSKCC	GRCh37	11	32417833	32417833	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064523-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			263	142	439	0	ENST00000332351.3:c.1219C>A	p.His407Asn	p.H407N	ENST00000332351	NM_024426.4	407	Cac/Aac																																																																															
ALK	238	MSKCC	GRCh37	2	30143369	30143369	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064523-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			249	44	423	0	ENST00000389048.3:c.157A>T	p.Ser53Cys	p.S53C	ENST00000389048	NM_004304.4	53	Agt/Tgt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230406	46230406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064523-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			279	112	453	0	ENST00000334344.6:c.740G>T	p.Arg247Leu	p.R247L	ENST00000334344	NM_152641.2	247	cGt/cTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992998	72992998	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064523-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			480	75	490	0	ENST00000268489.5:c.1047C>G	p.His349Gln	p.H349Q	ENST00000268489	NM_006885.3	349	caC/caG																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115273181	115273181	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0064523-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			379	84	564	0	ENST00000438362.2:c.1277T>G	p.Leu426Arg	p.L426R	ENST00000438362	NM_001242891.1	426	cTg/cGg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902584	1902584	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064523-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			318	197	577	0	ENST00000382895.3:c.203A>G	p.His68Arg	p.H68R	ENST00000382895	NM_133330.2	68	cAc/cGc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422618	47422618	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0064523-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			334	150	440	0	ENST00000404338.3:c.686C>G	p.Ser229Ter	p.S229*	ENST00000404338	NM_004491.4	229	tCa/tGa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117715371	117715371	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064523-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			256	107	377	0	ENST00000368508.3:c.1118C>G	p.Ser373Cys	p.S373C	ENST00000368508	NM_002944.2	373	tCc/tGc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876161	35876161	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064523-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			376	195	504	0	ENST00000303115.3:c.953A>T	p.Asp318Val	p.D318V	ENST00000303115	NM_002185.3	318	gAt/gTt																																																																															
MSI2	124540	MSKCC	GRCh37	17	55335648	55335648	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064523-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			442	66	409	0	ENST00000284073.2:c.203C>G	p.Thr68Arg	p.T68R	ENST00000284073	NM_138962.2	68	aCg/aGg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0065817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			586	117	501	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0065817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			519	110	531	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629376	187629376	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs888101917		P-0065817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			448	62	492	0	ENST00000441802.2:c.1606C>G	p.Leu536Val	p.L536V	ENST00000441802	NM_005245.3	536	Ctg/Gtg																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61305053	61305053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			426	87	430	0	ENST00000341074.5:c.1073C>T	p.Ser358Leu	p.S358L	ENST00000341074	NM_002974.2	358	tCa/tTa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30108024	30108024	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	47	350	0	ENST00000331968.5:c.783G>C	p.Lys261Asn	p.K261N	ENST00000331968	NM_002742.2	261	aaG/aaC																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997727	149997727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			441	67	386	0	ENST00000253339.5:c.2740C>T	p.Pro914Ser	p.P914S	ENST00000253339		914	Ccc/Tcc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859619	57859619	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			583	34	523	0	ENST00000228682.2:c.673G>C	p.Glu225Gln	p.E225Q	ENST00000228682	NM_005269.2	225	Gag/Cag																																																																															
ATR	545	MSKCC	GRCh37	3	142216012	142216012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			408	27	353	0	ENST00000350721.4:c.5581G>A	p.Glu1861Lys	p.E1861K	ENST00000350721	NM_001184.3	1861	Gag/Aag																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001583	150001583	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			299	24	401	0	ENST00000253339.5:c.2021C>G	p.Ser674Cys	p.S674C	ENST00000253339		674	tCt/tGt																																																																															
TERT	7015	MSKCC	GRCh37	5	1293714	1293714	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			617	71	445	0	ENST00000310581.5:c.1287G>T	p.Glu429Asp	p.E429D	ENST00000310581	NM_198253.2	429	gaG/gaT																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18277080	18277080	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			480	27	371	0	ENST00000222254.8:c.1527C>G	p.Phe509Leu	p.F509L	ENST00000222254	NM_005027.3	509	ttC/ttG																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281712	49281712	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			524	62	471	0	ENST00000282018.3:c.759G>C	p.Leu253Phe	p.L253F	ENST00000282018	NM_020377.2	253	ttG/ttC																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505604	186505604	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			358	49	394	0	ENST00000323963.5:c.1012G>C	p.Asp338His	p.D338H	ENST00000323963		338	Gat/Cat																																																																															
EP300	2033	MSKCC	GRCh37	22	41569689	41569689	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			485	65	438	0	ENST00000263253.7:c.4680G>C	p.Lys1560Asn	p.K1560N	ENST00000263253	NM_001429.3	1560	aaG/aaC																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424582	47424582	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			508	65	487	0	ENST00000404338.3:c.2650C>G	p.Gln884Glu	p.Q884E	ENST00000404338	NM_004491.4	884	Cag/Gag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111475	8111479	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAC	CAGAC	-			P-0066026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	369	379	0	ENST00000346208.3:c.963_967del	p.Gln321HisfsTer29	p.Q321Hfs*29	ENST00000346208		321	CAGACc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	146	359	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11168251	11168251	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	120	309	0	ENST00000361445.4:c.7621T>G	p.Cys2541Gly	p.C2541G	ENST00000361445	NM_004958.3	2541	Tgc/Ggc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753434	42753435	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0066026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	227	533	0	ENST00000222329.4:c.829dup	p.Tyr277LeufsTer32	p.Y277Lfs*32	ENST00000222329	NM_006494.2	277	tac/tTac																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99193477	99193477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	109	434	0	ENST00000074304.5:c.2672G>A	p.Arg891Gln	p.R891Q	ENST00000074304	NM_001134224.1	891	cGg/cAg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067390	37067390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			773	131	406	0	ENST00000231790.2:c.1301T>A	p.Leu434His	p.L434H	ENST00000231790	NM_000249.3	434	cTc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70349891	70349891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066091-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			37	13	246	0	ENST00000374080.3:c.3874G>A	p.Val1292Ile	p.V1292I	ENST00000374080		1292	Gta/Ata																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685315	89685315	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs876658153		P-0066332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	96	293	0	ENST00000371953.3:c.209+1G>A		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																																
TP53	7157	MSKCC	GRCh37	17	7578186	7578199	+	frameshift_variant	Frame_Shift_Del	DEL	CTCATAGGGCACCA	CTCATAGGGCACCA	AGGTGTGGTGGTG			P-0066332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	305	586	2	ENST00000269305.4:c.650_663delinsCACCACCACACCT	p.Val217AlafsTer30	p.V217Afs*30	ENST00000269305	NM_001126112.2	217	gTGGTGCCCTATGAG/gCACCACCACACCT																																																																															
TET2	54790	MSKCC	GRCh37	4	106155726	106155726	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	62	560	0	ENST00000380013.4:c.627T>G	p.Asn209Lys	p.N209K	ENST00000380013	NM_001127208.2	209	aaT/aaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0066857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	263	857	0	ENST00000269305.4:c.613dup	p.Tyr205LeufsTer4	p.Y205Lfs*4	ENST00000269305	NM_001126112.2	205	tat/tTat																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219005	36219005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	40	756	0	ENST00000222270.7:c.4504G>A	p.Glu1502Lys	p.E1502K	ENST00000222270	NM_014727.1	1502	Gaa/Aaa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6035238	6035238	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1805322		P-0066857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	68	790	0	ENST00000265849.7:c.830C>T	p.Thr277Met	p.T277M	ENST00000265849	NM_000535.5	277	aCg/aTg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900329	101900329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	31	580	0	ENST00000374994.4:c.763C>T	p.Arg255Cys	p.R255C	ENST00000374994	NM_004612.2	255	Cgt/Tgt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390794	139390794	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	209	903	0	ENST00000277541.6:c.7397del	p.Thr2466SerfsTer11	p.T2466Sfs*11	ENST00000277541	NM_017617.3	2466	aCg/ag																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134566	41134566	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	62	783	0	ENST00000379561.5:c.1062G>C	p.Lys354Asn	p.K354N	ENST00000379561	NM_002015.3	354	aaG/aaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0067035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	111	561	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0067035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	157	726	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0067035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	133	747	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949966	44949966	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0067035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	100	480	0	ENST00000377967.4:c.3737-2A>G		p.X1246_splice	ENST00000377967	NM_021140.2	1246																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0067038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	143	678	4	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0067038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	120	497	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
AKT2	208	MSKCC	GRCh37	19	40739826	40739826	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142926499		P-0067038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1104	133	650	2	ENST00000392038.2:c.1399C>T	p.Arg467Trp	p.R467W	ENST00000392038	NM_001626.4	467	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0067038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	147	482	6	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138400853	138400854	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	46	437	1	ENST00000289153.2:c.2459dup	p.Leu820PhefsTer33	p.L820Ffs*33	ENST00000289153	NM_006219.2	820	ttg/ttTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0067191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	174	630	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935322	36935323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs747437399		P-0067191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			722	153	652	2	ENST00000361632.4:c.1404dup	p.Ser469GlnfsTer5	p.S469Qfs*5	ENST00000361632		468	-/C																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922084	39922085	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0067191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	194	644	0	ENST00000378444.4:c.4087_4088del	p.Cys1363GlnfsTer45	p.C1363Qfs*45	ENST00000378444	NM_001123385.1	1363	TGc/c																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589591	67589593	+	inframe_deletion	In_Frame_Del	DEL	TAT	TAT	-			P-0067191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	11	424	0	ENST00000274335.5:c.1354_1356del	p.Tyr452del	p.Y452del	ENST00000274335		452	TAT/-																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424112	47424112	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	165	589	0	ENST00000404338.3:c.2180A>G	p.Lys727Arg	p.K727R	ENST00000404338	NM_004491.4	727	aAa/aGa																																																																															
CD276	80381	MSKCC	GRCh37	15	73996162	73996163	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGCC			P-0067191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	221	850	0	ENST00000318443.5:c.897_901dup	p.Arg301GlnfsTer27	p.R301Qfs*27	ENST00000318443	NM_001024736.1	299	gaa/gaAGGCCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	297	418	3	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			667	93	370	0	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			310	238	390	5	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	181	302	3	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023769	27023769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			572	117	377	0	ENST00000324856.7:c.879del	p.Thr294ProfsTer69	p.T294Pfs*69	ENST00000324856	NM_006015.4	292	aCc/ac																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874637	35874637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			487	185	326	1	ENST00000303115.3:c.799del	p.Arg267GlyfsTer28	p.R267Gfs*28	ENST00000303115	NM_002185.3	265	Aaa/aa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			731	177	371	7	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262742	16262742	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769028117		P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			552	263	359	0	ENST00000375759.3:c.10007G>A	p.Arg3336Gln	p.R3336Q	ENST00000375759	NM_015001.2	3336	cGg/cAg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45422959	45422959	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			222	218	332	1	ENST00000262160.6:c.169C>T	p.Arg57Ter	p.R57*	ENST00000262160	NM_005901.5	57	Cga/Tga																																																																															
PMS2	5395	MSKCC	GRCh37	7	6043349	6043349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			133	42	76	0	ENST00000265849.7:c.325del	p.Glu109LysfsTer3	p.E109Kfs*3	ENST00000265849	NM_000535.5	109	Gaa/aa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262680	16262680	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			533	220	336	1	ENST00000375759.3:c.9950del	p.Pro3317ArgfsTer83	p.P3317Rfs*83	ENST00000375759	NM_015001.2	3315	caC/ca																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1297203260		P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			488	251	391	0	ENST00000245479.2:c.916del	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			539	224	321	1	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																															
WT1	7490	MSKCC	GRCh37	11	32449577	32449577	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1060501253		P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			465	187	340	1	ENST00000332351.3:c.797del	p.Pro266ArgfsTer20	p.P266Rfs*20	ENST00000332351	NM_024426.4	266	cCg/cg																																																																															
TEK	7010	MSKCC	GRCh37	9	27185545	27185545	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			584	287	405	0	ENST00000380036.4:c.1250del	p.Pro417LeufsTer10	p.P417Lfs*10	ENST00000380036	NM_000459.3	415	ctC/ct																																																																															
APC	324	MSKCC	GRCh37	5	112102099	112102099	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750503329		P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			116	106	180	0	ENST00000257430.4:c.212G>A	p.Arg71His	p.R71H	ENST00000257430	NM_000038.5	71	cGt/cAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57478756	57478757	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			770	44	348	0	ENST00000371085.3:c.348dup	p.Val117ArgfsTer23	p.V117Rfs*23	ENST00000371085	NM_000516.4	114	-/C																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685289	89685289	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			183	171	234	4	ENST00000371953.3:c.188del	p.Asn63ThrfsTer36	p.N63Tfs*36	ENST00000371953	NM_000314.4	62	Aaa/aa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861951	57861951	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs564218374		P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			533	241	427	0	ENST00000228682.2:c.1252C>T	p.Arg418Trp	p.R418W	ENST00000228682	NM_005269.2	418	Cgg/Tgg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240069	41240069	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1482440466		P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	81	181	1	ENST00000379561.5:c.281T>C	p.Val94Ala	p.V94A	ENST00000379561	NM_002015.3	94	gTg/gCg																																																																															
KDR	3791	MSKCC	GRCh37	4	55991439	55991439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1424357101		P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			370	211	300	2	ENST00000263923.4:c.22G>A	p.Ala8Thr	p.A8T	ENST00000263923	NM_002253.2	8	Gcc/Acc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553542	106553542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	237	386	2	ENST00000369096.4:c.1507G>A	p.Ala503Thr	p.A503T	ENST00000369096	NM_001198.3	503	Gcc/Acc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149498371	149498371	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776607612		P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			493	239	410	0	ENST00000261799.4:c.2843G>A	p.Arg948Gln	p.R948Q	ENST00000261799	NM_002609.3	948	cGg/cAg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6042170	6042170	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758561884		P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			700	104	390	0	ENST00000265849.7:c.451C>T	p.Arg151Cys	p.R151C	ENST00000265849	NM_000535.5	151	Cgc/Tgc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3634841	3634841	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			597	245	382	0	ENST00000294008.3:c.4668del	p.Val1558CysfsTer3	p.V1558Cfs*3	ENST00000294008	NM_032444.2	1556	ccC/cc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246658	41246658	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			547	257	356	3	ENST00000357654.3:c.890T>G	p.Met297Arg	p.M297R	ENST00000357654	NM_007294.3	297	aTg/aGg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2103421	2103421	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			374	179	263	0	ENST00000219476.3:c.304C>G	p.Leu102Val	p.L102V	ENST00000219476	NM_000548.3	102	Ctg/Gtg																																																																															
APC	324	MSKCC	GRCh37	5	112176152	112176153	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			263	273	423	0	ENST00000257430.4:c.4865dup	p.Asn1622LysfsTer10	p.N1622Kfs*10	ENST00000257430	NM_000038.5	1621	caa/cAaa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44732930	44732931	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			131	226	142	0	ENST00000377967.4:c.136_137del	p.Arg46GlyfsTer18	p.R46Gfs*18	ENST00000377967	NM_021140.2	45	GAg/g																																																																															
CDH1	999	MSKCC	GRCh37	16	68846128	68846128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			345	128	330	0	ENST00000261769.5:c.1099G>A	p.Asp367Asn	p.D367N	ENST00000261769	NM_004360.3	367	Gac/Aac																																																																															
RAB35	11021	MSKCC	GRCh37	12	120536920	120536920	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			600	83	311	0	ENST00000229340.5:c.266A>G	p.Asp89Gly	p.D89G	ENST00000229340	NM_006861.6	89	gAc/gGc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350021	15350021	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			495	256	367	0	ENST00000263377.2:c.3631A>G	p.Thr1211Ala	p.T1211A	ENST00000263377	NM_058243.2	1211	Acc/Gcc																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374889	149374889	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			508	215	325	3	ENST00000360632.3:c.205T>A	p.Ser69Thr	p.S69T	ENST00000360632	NM_015472.4	69	Tcg/Acg																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222272	6222277	+	inframe_deletion	In_Frame_Del	DEL	AGGAGG	AGGAGG	-			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			601	245	462	0	ENST00000252674.7:c.965_970del	p.Ser322_Ser323del	p.S322_S323del	ENST00000252674	NM_005934.3	322	tCCTCCTtc/ttc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618449	37618449	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			598	292	362	0	ENST00000447079.4:c.125A>G	p.His42Arg	p.H42R	ENST00000447079	NM_015083.1	42	cAc/cGc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554462	63554462	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			527	291	445	1	ENST00000307078.5:c.277T>C	p.Tyr93His	p.Y93H	ENST00000307078	NM_004655.3	93	Tac/Cac																																																																															
YES1	7525	MSKCC	GRCh37	18	745708	745708	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	101	306	0	ENST00000314574.4:c.724G>T	p.Glu242Ter	p.E242*	ENST00000314574	NM_005433.3	242	Gaa/Taa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670439	30670439	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1338281774		P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			580	318	380	0	ENST00000376406.3:c.5993G>A	p.Gly1998Asp	p.G1998D	ENST00000376406	NM_014641.2	1998	gGc/gAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176639158	176639158	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			554	260	429	1	ENST00000439151.2:c.3758T>C	p.Ile1253Thr	p.I1253T	ENST00000439151	NM_022455.4	1253	aTt/aCt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874778	151874778	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			503	242	350	0	ENST00000262189.6:c.7760A>T	p.Asn2587Ile	p.N2587I	ENST00000262189	NM_170606.2	2587	aAt/aTt																																																																															
CTR9	9646	MSKCC	GRCh37	11	10785376	10785376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			446	235	343	2	ENST00000361367.2:c.1144G>A	p.Gly382Ser	p.G382S	ENST00000361367	NM_014633.3	382	Ggc/Agc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138560	11138560	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			706	111	382	0	ENST00000344626.4:c.3316A>G	p.Thr1106Ala	p.T1106A	ENST00000344626	NM_003072.3	1106	Acc/Gcc																																																																															
STK40	83931	MSKCC	GRCh37	1	36807364	36807364	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750541903		P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	198	270	2	ENST00000373129.3:c.1300C>T	p.Arg434Trp	p.R434W	ENST00000373129	NM_032017.1	434	Cgg/Tgg																																																																															
MGA	23269	MSKCC	GRCh37	15	41988377	41988377	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			288	261	335	0	ENST00000219905.7:c.1169A>G	p.Asp390Gly	p.D390G	ENST00000219905	NM_001164273.1	390	gAc/gGc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138433549	138433549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			427	187	317	0	ENST00000289153.2:c.1063G>A	p.Ala355Thr	p.A355T	ENST00000289153	NM_006219.2	355	Gct/Act																																																																															
MITF	4286	MSKCC	GRCh37	3	70014151	70014151	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			546	229	393	2	ENST00000352241.4:c.1315A>G	p.Thr439Ala	p.T439A	ENST00000352241	NM_198159.2	439	Aca/Gca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213930	36213930	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756802660		P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			655	147	398	0	ENST00000222270.7:c.2756C>T	p.Pro919Leu	p.P919L	ENST00000222270	NM_014727.1	919	cCg/cTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582079	95582079	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			568	223	388	1	ENST00000343455.3:c.1832del	p.Phe611SerfsTer6	p.F611Sfs*6	ENST00000343455	NM_177438.2	611	tTc/tc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262460	16262460	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			366	109	228	1	ENST00000375759.3:c.9729del	p.Thr3244ProfsTer40	p.T3244Pfs*40	ENST00000375759	NM_015001.2	3242	gCc/gc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31388003	31388003	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752495145		P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			519	303	352	0	ENST00000328111.2:c.1804G>A	p.Val602Ile	p.V602I	ENST00000328111	NM_006892.3	602	Gtc/Atc																																																																															
EP300	2033	MSKCC	GRCh37	22	41573678	41573678	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			588	297	439	1	ENST00000263253.7:c.5963G>T	p.Gly1988Val	p.G1988V	ENST00000263253	NM_001429.3	1988	gGg/gTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103519118	103519118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774567443		P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			376	190	330	1	ENST00000355739.4:c.2456G>A	p.Arg819Gln	p.R819Q	ENST00000355739	NM_000123.3	819	cGg/cAg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37676268	37676268	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			514	243	272	0	ENST00000447079.4:c.3023G>T	p.Arg1008Leu	p.R1008L	ENST00000447079	NM_015083.1	1008	cGg/cTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202131356	202131356	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			486	227	329	2	ENST00000358485.4:c.324G>T	p.Gln108His	p.Q108H	ENST00000358485	NM_001080125.1	108	caG/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0067577-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			340	17	646	0	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
FAT1	2195	MSKCC	GRCh37	4	187542720	187542720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	16	441	0	ENST00000441802.2:c.5020G>A	p.Val1674Ile	p.V1674I	ENST00000441802	NM_005245.3	1674	Gtt/Att																																																																															
ALK	238	MSKCC	GRCh37	2	29497976	29497978	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0067739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	98	475	0	ENST00000389048.3:c.2028_2030del	p.Phe677del	p.F677del	ENST00000389048	NM_004304.4	676	atCTTt/att																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99189300	99189300	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	91	438	0	ENST00000074304.5:c.2556G>C	p.Gln852His	p.Q852H	ENST00000074304	NM_001134224.1	852	caG/caC																																																																															
GNAS	2778	MSKCC	GRCh37	20	57480500	57480507	+	stop_gained,protein_altering_variant	Nonsense_Mutation	DEL	CTCCAACG	CTCCAACG	TT			P-0067739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			771	110	486	1	ENST00000371085.3:c.495_502delinsTT	p.Ser166_Glu168delinsTer	p.S166_E168delins*	ENST00000371085	NM_000516.4	165	cgCTCCAACGag/cgTTag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152415537	152415537	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519714		P-0067774-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			99	134	502	0	ENST00000206249.3:c.1387T>C	p.Ser463Pro	p.S463P	ENST00000206249	NM_000125.3	463	Tcc/Ccc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135778090	135778090	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs118203673		P-0067774-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			115	51	501	0	ENST00000298552.3:c.2293C>T	p.Gln765Ter	p.Q765*	ENST00000298552	NM_001162426.1	765	Cag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034487	47034487	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067777-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			162	246	321	0	ENST00000329236.7:c.341A>G	p.Asn114Ser	p.N114S	ENST00000329236	NM_001204466.1	114	aAt/aGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0067777-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			185	257	244	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578464	7578466	+	missense_variant	Missense_Mutation	ONP	GGG	GGG	AGT			P-0067777-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			289	340	555	0	ENST00000269305.4:c.464_466delinsACT	p.Thr155_Arg156delinsAsnCys	p.T155_R156delinsNC	ENST00000269305	NM_001126112.2	155	aCCCgc/aACTgc																																																																															
ATR	545	MSKCC	GRCh37	3	142274835	142274835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067777-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			313	228	354	0	ENST00000350721.4:c.2225G>A	p.Cys742Tyr	p.C742Y	ENST00000350721	NM_001184.3	742	tGt/tAt																																																																															
NPM1	4869	MSKCC	GRCh37	5	170817124	170817124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067777-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	60	209	0	ENST00000296930.5:c.128C>T	p.Ser43Phe	p.S43F	ENST00000296930	NM_002520.6	43	tCt/tTt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0067938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	132	358	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs1057517840		P-0067938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	130	432	0	ENST00000269305.4:c.626_627del	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	175	484	0	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1293430	1293430	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0067938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	21	356	0	ENST00000310581.5:c.1571C>A	p.Pro524Gln	p.P524Q	ENST00000310581	NM_198253.2	524	cCa/cAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152007149	152007149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	129	327	0	ENST00000262189.6:c.751G>A	p.Ala251Thr	p.A251T	ENST00000262189	NM_170606.2	251	Gct/Act																																																																															
EP300	2033	MSKCC	GRCh37	22	41553350	41553350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	59	438	0	ENST00000263253.7:c.3439G>A	p.Glu1147Lys	p.E1147K	ENST00000263253	NM_001429.3	1147	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112177920	112177920	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0067938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	75	375	0	ENST00000257430.4:c.6629C>G	p.Ser2210Ter	p.S2210*	ENST00000257430	NM_000038.5	2210	tCa/tGa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750740	57750740	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0067938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	62	330	0	ENST00000274289.3:c.1864C>T	p.Gln622Ter	p.Q622*	ENST00000274289	NM_006622.3	622	Cag/Tag																																																																															
XIAP	331	MSKCC	GRCh37	X	123040837	123040837	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0067938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	50	312	0	ENST00000355640.3:c.1301-1G>C		p.X434_splice	ENST00000355640		434																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151846111	151846111	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1299251851		P-0067938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	200	491	1	ENST00000262189.6:c.12901C>G	p.Pro4301Ala	p.P4301A	ENST00000262189	NM_170606.2	4301	Ccc/Gcc																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945296	54945296	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	22	171	0	ENST00000312783.6:c.1130T>C	p.Val377Ala	p.V377A	ENST00000312783	NM_198436.1	377	gTa/gCa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151846118	151846120	+	frameshift_variant	Frame_Shift_Ins	INS	TTT	TTT	GAAG			P-0067938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	177	492	1	ENST00000262189.6:c.12892_12894delinsCTTC	p.Lys4298LeufsTer17	p.K4298Lfs*17	ENST00000262189	NM_170606.2	4298	AAA/CTTC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0067968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	72	426	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0067968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	17	409	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0067968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	9	444	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413072	139413072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	63	522	0	ENST00000277541.6:c.1070T>C	p.Phe357Ser	p.F357S	ENST00000277541	NM_017617.3	357	tTc/tCc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628314	187628314	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	21	537	0	ENST00000441802.2:c.2668G>C	p.Glu890Gln	p.E890Q	ENST00000441802	NM_005245.3	890	Gag/Cag																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59871091	59871091	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0067968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	36	402	0	ENST00000259008.2:c.1341-1G>A		p.X447_splice	ENST00000259008	NM_032043.2	447																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49443643	49443643	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	60	576	0	ENST00000301067.7:c.3728G>T	p.Gly1243Val	p.G1243V	ENST00000301067	NM_003482.3	1243	gGg/gTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639969	3639969	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0067968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	48	550	0	ENST00000294008.3:c.3670G>T	p.Glu1224Ter	p.E1224*	ENST00000294008	NM_032444.2	1224	Gag/Tag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198281500	198281500	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	55	484	0	ENST00000335508.6:c.631A>G	p.Thr211Ala	p.T211A	ENST00000335508	NM_012433.2	211	Act/Gct																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151919134	151919134	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	33	444	0	ENST00000262189.6:c.3451T>C	p.Cys1151Arg	p.C1151R	ENST00000262189	NM_170606.2	1151	Tgt/Cgt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120512304	120512304	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	84	677	0	ENST00000256646.2:c.938del	p.Gly313AlafsTer83	p.G313Afs*83	ENST00000256646	NM_024408.3	313	gGc/gc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40979286	40979286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	176	473	0	ENST00000373198.4:c.1847C>A	p.Ser616Tyr	p.S616Y	ENST00000373198	NM_133170.3	616	tCc/tAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426325	49426325	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	52	590	0	ENST00000301067.7:c.12163C>A	p.Pro4055Thr	p.P4055T	ENST00000301067	NM_003482.3	4055	Cct/Act																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481674	56481674	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	76	670	0	ENST00000267101.3:c.709G>T	p.Gly237Cys	p.G237C	ENST00000267101	NM_001982.3	237	Ggc/Tgc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436231	110436231	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	39	560	0	ENST00000375856.3:c.2170G>T	p.Gly724Trp	p.G724W	ENST00000375856	NM_003749.2	724	Ggg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0067974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	91	482	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0067974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	38	390	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0067974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	42	311	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645751	12645751	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	41	459	0	ENST00000251849.4:c.718T>G	p.Phe240Val	p.F240V	ENST00000251849	NM_002880.3	240	Ttt/Gtt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285209	15285209	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0067974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	42	519	0	ENST00000263388.2:c.4406C>T	p.Pro1469Leu	p.P1469L	ENST00000263388	NM_000435.2	1469	cCg/cTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0067975-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	408	519	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577594	7577594	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067975-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	153	472	0	ENST00000269305.4:c.687del	p.Cys229Ter	p.C229*	ENST00000269305	NM_001126112.2	229	tgT/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs397516439		P-0067977-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	502	612	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
PAK1	5058	MSKCC	GRCh37	11	77090396	77090396	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0067977-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1073	337	455	0	ENST00000356341.3:c.329C>G	p.Ser110Ter	p.S110*	ENST00000356341	NM_002576.4	110	tCa/tGa																																																																															
NF1	4763	MSKCC	GRCh37	17	29592267	29592291	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAATTCAAGGCTTTGAAAACGTT	AAGAATTCAAGGCTTTGAAAACGTT	-			P-0067977-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	15	338	0	ENST00000358273.4:c.4748_4772del	p.Glu1583ValfsTer33	p.E1583Vfs*33	ENST00000358273	NM_001042492.2	1582	gAAGAATTCAAGGCTTTGAAAACGTTa/ga																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732247	74732247	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067977-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	351	491	0	ENST00000359995.5:c.662C>G	p.Ser221Cys	p.S221C	ENST00000359995	NM_001195427.1	221	tCt/tGt																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650608	48650609	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0067977-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	376	684	0	ENST00000376670.3:c.581_582del	p.Leu194ProfsTer6	p.L194Pfs*6	ENST00000376670	NM_002049.3	193	aCT/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	370	508	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163889	152163889	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	170	482	0	ENST00000206249.3:c.610G>T	p.Gly204Cys	p.G204C	ENST00000206249	NM_000125.3	204	Ggc/Tgc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638674	176638674	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	161	502	0	ENST00000439151.2:c.3274C>T	p.Gln1092Ter	p.Q1092*	ENST00000439151	NM_022455.4	1092	Cag/Tag																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561041	9561041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	146	528	0	ENST00000353224.5:c.741G>T	p.Lys247Asn	p.K247N	ENST00000353224	NM_177990.2	247	aaG/aaT																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87325688	87325688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	246	416	0	ENST00000277120.3:c.565C>A	p.Leu189Met	p.L189M	ENST00000277120		189	Ctg/Atg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460439	149460439	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	159	515	0	ENST00000286301.3:c.198C>G	p.Ser66Arg	p.S66R	ENST00000286301	NM_005211.3	66	agC/agG																																																																															
RIT1	6016	MSKCC	GRCh37	1	155870307	155870307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	167	509	1	ENST00000368323.3:c.532C>A	p.Leu178Ile	p.L178I	ENST00000368323	NM_006912.5	178	Ctt/Att																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182665395	182665395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	326	281	0	ENST00000292782.4:c.546G>T	p.Trp182Cys	p.W182C	ENST00000292782	NM_020640.2	182	tgG/tgT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446175	49446175	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	153	491	0	ENST00000301067.7:c.1291del	p.Glu431ArgfsTer4	p.E431Rfs*4	ENST00000301067	NM_003482.3	431	Gag/ag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412697	63412697	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	136	209	0	ENST00000330258.3:c.470A>G	p.Glu157Gly	p.E157G	ENST00000330258	NM_152424.3	157	gAg/gGg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828147	243828147	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	158	362	0	ENST00000263826.5:c.211A>T	p.Thr71Ser	p.T71S	ENST00000263826	NM_005465.4	71	Aca/Tca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420031	49420031	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	195	575	0	ENST00000301067.7:c.15718G>C	p.Glu5240Gln	p.E5240Q	ENST00000301067	NM_003482.3	5240	Gag/Cag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448481	49448481	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747186162		P-0068017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	145	476	0	ENST00000301067.7:c.230A>G	p.His77Arg	p.H77R	ENST00000301067	NM_003482.3	77	cAc/cGc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970985	21970986	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0068017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	157	518	0	ENST00000304494.5:c.372_373del	p.Asp125CysfsTer16	p.D125Cfs*16	ENST00000304494	NM_000077.4	124	cgCGat/cgat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0068018-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	20	416	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EP300	2033	MSKCC	GRCh37	22	41572955	41572955	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068018-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	25	624	0	ENST00000263253.7:c.5240A>G	p.Gln1747Arg	p.Q1747R	ENST00000263253	NM_001429.3	1747	cAg/cGg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187535416	187535416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs756123882		P-0068018-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	13	464	0	ENST00000441802.2:c.9158G>T	p.Arg3053Leu	p.R3053L	ENST00000441802	NM_005245.3	3053	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0068019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			83	271	378	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207009	1207009	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			79	609	338	0	ENST00000326873.7:c.97G>T	p.Glu33Ter	p.E33*	ENST00000326873	NM_000455.4	33	Gag/Tag																																																																															
KDR	3791	MSKCC	GRCh37	4	55974004	55974004	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	400	304	0	ENST00000263923.4:c.1312G>T	p.Gly438Cys	p.G438C	ENST00000263923	NM_002253.2	438	Ggc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993579	72993579	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	219	366	0	ENST00000268489.5:c.466G>T	p.Ala156Ser	p.A156S	ENST00000268489	NM_006885.3	156	Gcc/Tcc																																																																															
AKT1	207	MSKCC	GRCh37	14	105239686	105239686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	77	338	0	ENST00000349310.3:c.859C>T	p.His287Tyr	p.H287Y	ENST00000349310	NM_001014432.1	287	Cac/Tac																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670604	134670605	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0068019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1090	74	310	0	ENST00000398015.3:c.520dup	p.Tyr174LeufsTer87	p.Y174Lfs*87	ENST00000398015	NM_004441.4	172	ggt/ggTt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81606031	81606031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	181	287	0	ENST00000298171.2:c.701C>T	p.Ser234Phe	p.S234F	ENST00000298171	NM_000369.2	234	tCt/tTt																																																																															
TERT	7015	MSKCC	GRCh37	5	1279440	1279440	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1376041056		P-0068019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	54	274	0	ENST00000310581.5:c.2096C>T	p.Ala699Val	p.A699V	ENST00000310581	NM_198253.2	699	gCc/gTc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16068435	16068435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	22	74	0	ENST00000268712.3:c.476C>T	p.Pro159Leu	p.P159L	ENST00000268712	NM_006311.3	159	cCa/cTa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2220221	2220221	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0068019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			61	322	318	0	ENST00000398665.3:c.2806G>C	p.Gly936Arg	p.G936R	ENST00000398665	NM_032482.2	936	Ggc/Cgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782329		P-0068034-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	50	468	0	ENST00000269305.4:c.746G>C	p.Arg249Thr	p.R249T	ENST00000269305	NM_001126112.2	249	aGg/aCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0068034-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	36	380	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ALK	238	MSKCC	GRCh37	2	30143316	30143316	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068034-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	31	574	0	ENST00000389048.3:c.210C>G	p.Asp70Glu	p.D70E	ENST00000389048	NM_004304.4	70	gaC/gaG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378571	25378571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068034-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	34	382	1	ENST00000256078.4:c.427G>A	p.Glu143Lys	p.E143K	ENST00000256078	NM_033360.2	143	Gaa/Aaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971048	21971052	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGC	GCCGC	-			P-0068034-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	57	554	0	ENST00000304494.5:c.306_310del	p.Arg103GlyfsTer15	p.R103Gfs*15	ENST00000304494	NM_000077.4	102	gcGCGGCtg/gctg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231755	66231755	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068034-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	25	369	0	ENST00000273854.3:c.1945A>G	p.Thr649Ala	p.T649A	ENST00000273854	NM_004439.5	649	Act/Gct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0068035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1048	41	753	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131973853	131973853	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			743	48	563	0	ENST00000265335.6:c.3556G>T	p.Val1186Leu	p.V1186L	ENST00000265335		1186	Gtg/Ttg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0068038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	729	488	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106764	27106765	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0068038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			881	179	680	0	ENST00000324856.7:c.6376dup	p.Ser2126LysfsTer24	p.S2126Kfs*24	ENST00000324856	NM_006015.4	2125	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs587780073		P-0068040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	187	608	0	ENST00000269305.4:c.701A>C	p.Tyr234Ser	p.Y234S	ENST00000269305	NM_001126112.2	234	tAc/tCc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912175	29912175	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs41547331		P-0068040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	90	269	0	ENST00000376809.5:c.895+1G>A		p.X299_splice	ENST00000376809	NM_002116.7	299																																																																																
TERT	7015	MSKCC	GRCh37	5	1268637	1268637	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0068040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	57	553	0	ENST00000310581.5:c.2580C>A	p.Asp860Glu	p.D860E	ENST00000310581	NM_198253.2	860	gaC/gaA																																																																															
APC	324	MSKCC	GRCh37	5	112174956	112174956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	84	598	0	ENST00000257430.4:c.3665C>T	p.Ser1222Leu	p.S1222L	ENST00000257430	NM_000038.5	1222	tCa/tTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306532	41306560	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGGCCCTGGCGGTCCCGTACCCCCCTC	GGAGGCCCTGGCGGTCCCGTACCCCCCTC	-			P-0068040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	29	545	0	ENST00000373198.4:c.1099_1127del	p.Glu367ProfsTer43	p.E367Pfs*43	ENST00000373198	NM_133170.3	367	GAGGGGGGTACGGGACCGCCAGGGCCTCCc/c																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974700	21974701	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0068048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	114	350	0	ENST00000304494.5:c.126_127del	p.Asn42LysfsTer77	p.N42Kfs*77	ENST00000304494	NM_000077.4	42	aaTAgt/aagt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65313279	65313279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	36	313	0	ENST00000342505.4:c.1835C>T	p.Ser612Phe	p.S612F	ENST00000342505	NM_002227.2	612	tCt/tTt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227632	36227632	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758032213		P-0068048-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	37	322	0	ENST00000222270.7:c.7201G>A	p.Asp2401Asn	p.D2401N	ENST00000222270	NM_014727.1	2401	Gat/Aat																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134242	41134242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	36	397	0	ENST00000379561.5:c.1386G>T	p.Leu462Phe	p.L462F	ENST00000379561	NM_002015.3	462	ttG/ttT																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0068052-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	235	288	1	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578546	7578547	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0068052-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	291	318	0	ENST00000269305.4:c.383dup	p.Ala129CysfsTer20	p.A129Cfs*20	ENST00000269305	NM_001126112.2	128	cct/ccCt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0068058-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			399	65	455	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068058-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	75	440	0	ENST00000374672.4:c.1225A>C	p.Lys409Gln	p.K409Q	ENST00000374672	NM_004235.4	409	Aag/Cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0068058-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	77	286	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933345	39933346	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0068058-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	107	615	0	ENST00000378444.4:c.1253_1254del	p.Arg418LysfsTer21	p.R418Kfs*21	ENST00000378444	NM_001123385.1	418	aGA/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0068085-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	17	526	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519912		P-0068085-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	12	280	0	ENST00000374080.3:c.3670C>G	p.Leu1224Val	p.L1224V	ENST00000374080		1224	Ctc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0068088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	169	637	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
HGF	3082	MSKCC	GRCh37	7	81350121	81350121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	49	345	0	ENST00000222390.5:c.1211C>T	p.Ser404Phe	p.S404F	ENST00000222390	NM_000601.4	404	tCc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0068088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	107	393	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164975	47164975	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	173	488	0	ENST00000409792.3:c.1151A>C	p.Glu384Ala	p.E384A	ENST00000409792	NM_014159.6	384	gAa/gCa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58677783	58677783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			2195	310	531	0	ENST00000305921.3:c.8G>A	p.Gly3Glu	p.G3E	ENST00000305921	NM_003620.3	3	gGg/gAg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58677825	58677825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0068088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			2467	371	571	0	ENST00000305921.3:c.50G>A	p.Gly17Glu	p.G17E	ENST00000305921	NM_003620.3	17	gGg/gAg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627577	37627577	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0068090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	269	494	0	ENST00000447079.4:c.1492del	p.Gln498ArgfsTer9	p.Q498Rfs*9	ENST00000447079	NM_015083.1	498	Cag/ag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508136	106508136	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	45	510	0	ENST00000359195.3:c.130C>A	p.Leu44Met	p.L44M	ENST00000359195	NM_002649.2	44	Ctg/Atg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736330	243736330	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	111	456	0	ENST00000263826.5:c.717del	p.Glu240SerfsTer38	p.E240Sfs*38	ENST00000263826	NM_005465.4	239	agA/ag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37673791	37673792	+	missense_variant	Missense_Mutation	DNP	TA	TA	GT			P-0068090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	91	369	1	ENST00000447079.4:c.2945_2946delinsGT	p.Leu982Arg	p.L982R	ENST00000447079	NM_015083.1	982	cTA/cGT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0068093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	84	416	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954272	32954273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs886038189		P-0068093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	98	367	2	ENST00000380152.3:c.9253dup	p.Thr3085AsnfsTer26	p.T3085Nfs*26	ENST00000380152		3082	-/A																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66782893	66782893	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	67	334	0	ENST00000307102.5:c.1122G>C	p.Trp374Cys	p.W374C	ENST00000307102	NM_002755.3	374	tgG/tgC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0068093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	63	274	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551798	150551798	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs771154790		P-0068093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	82	536	0	ENST00000369026.2:c.209C>A	p.Thr70Lys	p.T70K	ENST00000369026	NM_021960.4	70	aCg/aAg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715664	30715664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068093-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	75	442	0	ENST00000359013.4:c.1397C>T	p.Ser466Phe	p.S466F	ENST00000359013	NM_001024847.2	466	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0068097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	86	388	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178459	56178460	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0068097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	45	321	0	ENST00000399503.3:c.3433dup	p.Thr1145AsnfsTer6	p.T1145Nfs*6	ENST00000399503	NM_005921.1	1144	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7579361	7579361	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068117-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	23	619	0	ENST00000269305.4:c.326T>G	p.Phe109Cys	p.F109C	ENST00000269305	NM_001126112.2	109	tTc/tGc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720801	89720802	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0068118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	13	160	0	ENST00000371953.3:c.954dup	p.Thr319TyrfsTer6	p.T319Yfs*6	ENST00000371953	NM_000314.4	318	ctt/cTtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	250	699	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47421976	47421976	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs758574203		P-0068118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	148	634	0	ENST00000404338.3:c.44A>G	p.Asn15Ser	p.N15S	ENST00000404338	NM_004491.4	15	aAc/aGc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061220	38061228	+	inframe_deletion	In_Frame_Del	DEL	CGTTCTCGA	CGTTCTCGA	-			P-0068121-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	348	759	0	ENST00000250448.2:c.761_769del	p.Phe254_Gly257delinsCys	p.F254_G257delinsC	ENST00000250448	NM_004496.3	254	tTCGAGAACGgc/tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539249	187539249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068121-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	233	678	0	ENST00000441802.2:c.8491A>G	p.Ile2831Val	p.I2831V	ENST00000441802	NM_005245.3	2831	Atc/Gtc																																																																															
SCG5	6447	MSKCC	GRCh37	15	32988801	32988801	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068121-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	154	466	0	ENST00000300175.4:c.630T>G	p.Asp210Glu	p.D210E	ENST00000300175	NM_001144757.1	210	gaT/gaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7579315	7579316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1267047192		P-0068122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	66	592	0	ENST00000269305.4:c.371dup	p.Cys124TrpfsTer25	p.C124Wfs*25	ENST00000269305	NM_001126112.2	124	tgc/tgGc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439945	56439945	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0068122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	105	595	0	ENST00000407977.2:c.647C>A	p.Ser216Ter	p.S216*	ENST00000407977		216	tCg/tAg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349771	15349771	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781555424		P-0068122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	67	644	0	ENST00000263377.2:c.3803C>T	p.Ala1268Val	p.A1268V	ENST00000263377	NM_058243.2	1268	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0068122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	48	395	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0068171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	45	508	0	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448310	56448310	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0068171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	48	589	0	ENST00000407977.2:c.337C>T	p.Arg113Ter	p.R113*	ENST00000407977		113	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0068171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	27	374	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
HIST2H3D	653604	MSKCC	GRCh37	1	149784876	149784876	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	16	263	0	ENST00000331491.1:c.361A>T	p.Met121Leu	p.M121L	ENST00000331491	NM_001123375.2	121	Atg/Ttg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0068181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	61	277	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs397517199		P-0068181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	60	273	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589579	67589596	+	inframe_deletion	In_Frame_Del	DEL	AAATTACATGAATATAAC	AAATTACATGAATATAAC	-			P-0068181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	30	242	0	ENST00000274335.5:c.1343_1360del	p.Lys448_Asn453del	p.K448_N453del	ENST00000274335		448	AAATTACATGAATATAAC/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0068181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	117	451	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
WHSC1	7468	MSKCC	GRCh37	4	1936871	1936871	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0068181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	60	299	0	ENST00000382895.3:c.1556G>A	p.Gly519Asp	p.G519D	ENST00000382895	NM_133330.2	519	gGt/gAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29684327	29684401	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAATTCTTTATGAATACTTAGCAGAGGCCAGTGTTGTGTTTCCCAAAGTCTTTCCTGTTGTGTAAGTATCTCCTT	GAATTCTTTATGAATACTTAGCAGAGGCCAGTGTTGTGTTTCCCAAAGTCTTTCCTGTTGTGTAAGTATCTCCTT	-			P-0068181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	63	275	0	ENST00000358273.4:c.7910_7970+14del		p.X2637_splice	ENST00000358273	NM_001042492.2	2637																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9857899	9857899	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	39	391	0	ENST00000330684.3:c.3502A>T	p.Asn1168Tyr	p.N1168Y	ENST00000330684	NM_001134407.1	1168	Aac/Tac																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026566	48026566	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63750909		P-0068210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	153	461	0	ENST00000234420.5:c.1444C>T	p.Arg482Ter	p.R482*	ENST00000234420	NM_000179.2	482	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241688	55241688	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	41	397	0	ENST00000275493.2:c.2136C>G	p.Phe712Leu	p.F712L	ENST00000275493	NM_005228.3	712	ttC/ttG																																																																															
TERT	7015	MSKCC	GRCh37	5	1278821	1278821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150819225		P-0068214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	94	413	0	ENST00000310581.5:c.2221G>A	p.Val741Met	p.V741M	ENST00000310581	NM_198253.2	741	Gtg/Atg																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913233		P-0068214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	298	456	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																															
YAP1	10413	MSKCC	GRCh37	11	101984923	101984923	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587777249		P-0068214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	124	276	0	ENST00000282441.5:c.370C>T	p.Arg124Ter	p.R124*	ENST00000282441	NM_001130145.2	124	Cga/Tga																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870779	12870779	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0068214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	129	346	0	ENST00000228872.4:c.8del	p.Asn3ThrfsTer39	p.N3Tfs*39	ENST00000228872	NM_004064.3	2	tcA/tc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467803	99467803	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	30	400	0	ENST00000268035.6:c.2672C>G	p.Ala891Gly	p.A891G	ENST00000268035	NM_000875.3	891	gCc/gGc																																																																															
INSR	3643	MSKCC	GRCh37	19	7117159	7117159	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs74495977		P-0068215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	58	341	0	ENST00000302850.5:c.4057C>T	p.Arg1353Trp	p.R1353W	ENST00000302850	NM_000208.2	1353	Cgg/Tgg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37676264	37676271	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCGGTG	AAGCGGTG	-			P-0068215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	91	330	0	ENST00000447079.4:c.3019_3026del	p.Lys1007HisfsTer3	p.K1007Hfs*3	ENST00000447079	NM_015083.1	1007	AAGCGGTGc/c																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230601	46230601	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0068215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	57	340	0	ENST00000334344.6:c.850C>T	p.Gln284Ter	p.Q284*	ENST00000334344	NM_152641.2	284	Cag/Tag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061150	38061197	+	inframe_deletion	In_Frame_Del	DEL	CTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGC	CTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGC	-			P-0068215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	300	318	0	ENST00000250448.2:c.792_839del	p.Lys264_Ser280delinsAsn	p.K264_S280delinsN	ENST00000250448	NM_004496.3	264	aaGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGc/aac																																																																															
CDK12	51755	MSKCC	GRCh37	17	37667805	37667805	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0068215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	279	266	0	ENST00000447079.4:c.2691del	p.Thr898LeufsTer11	p.T898Lfs*11	ENST00000447079	NM_015083.1	897	aTt/at																																																																															
ATR	545	MSKCC	GRCh37	3	142204032	142204033	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTG			P-0068215-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	51	333	0	ENST00000350721.4:c.6168_6170dup	p.Asn2056dup	p.N2056dup	ENST00000350721	NM_001184.3	2056	aaa/aaCAAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587782272		P-0068216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	24	314	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0068216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	8	313	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	202	361	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261245	16261246	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0068217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	134	491	0	ENST00000375759.3:c.8516dup	p.Ala2840GlyfsTer7	p.A2840Gfs*7	ENST00000375759	NM_015001.2	2837	atc/atCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0068217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	145	317	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55238872	55238872	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0068217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	78	260	0	ENST00000275493.2:c.1885A>C	p.Thr629Pro	p.T629P	ENST00000275493	NM_005228.3	629	Act/Cct																																																																															
POT1	25913	MSKCC	GRCh37	7	124510965	124510965	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0068217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	78	246	0	ENST00000357628.3:c.255G>T	p.Lys85Asn	p.K85N	ENST00000357628	NM_015450.2	85	aaG/aaT																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729914	30729914	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1444024775		P-0068217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	97	385	1	ENST00000359013.4:c.1510C>T	p.Arg504Trp	p.R504W	ENST00000359013	NM_001024847.2	504	Cgg/Tgg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103528082	103528082	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	173	396	0	ENST00000355739.4:c.3390G>T	p.Gln1130His	p.Q1130H	ENST00000355739	NM_000123.3	1130	caG/caT																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156608	55156608	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs981559406		P-0068217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	134	417	0	ENST00000257290.5:c.3009G>T	p.Trp1003Cys	p.W1003C	ENST00000257290	NM_006206.4	1003	tgG/tgT																																																																															
KDM5A	5927	MSKCC	GRCh37	12	431654	431654	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	191	369	0	ENST00000399788.2:c.2355G>C	p.Arg785Ser	p.R785S	ENST00000399788	NM_001042603.1	785	agG/agC																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934022	39934022	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0068217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	126	448	0	ENST00000378444.4:c.577A>T	p.Asn193Tyr	p.N193Y	ENST00000378444	NM_001123385.1	193	Aat/Tat																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790065	40790065	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs780417311		P-0068217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	95	413	0	ENST00000373198.4:c.2666G>T	p.Arg889Leu	p.R889L	ENST00000373198	NM_133170.3	889	cGg/cTg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128044534	128044534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	114	366	0	ENST00000285398.2:c.1087G>T	p.Val363Leu	p.V363L	ENST00000285398	NM_000122.1	363	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0068243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	259	482	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0068243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	188	335	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70345997	70345997	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750730080		P-0068257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	36	205	0	ENST00000374080.3:c.2534C>T	p.Thr845Met	p.T845M	ENST00000374080		845	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0068257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	103	244	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108119831	108119831	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0068257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	99	235	0	ENST00000278616.4:c.1235+2T>G		p.X412_splice	ENST00000278616	NM_000051.3	412																																																																																
MAPKAP1	79109	MSKCC	GRCh37	9	128434609	128434609	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	49	275	0	ENST00000265960.3:c.245G>T	p.Arg82Ile	p.R82I	ENST00000265960	NM_001006617.1	82	aGa/aTa																																																																															
MYC	4609	MSKCC	GRCh37	8	128752723	128752723	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	219	432	0	ENST00000377970.2:c.884G>C	p.Gly295Ala	p.G295A	ENST00000377970	NM_002467.4	295	gGa/gCa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391608	139391608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	68	546	0	ENST00000277541.6:c.6583G>T	p.Gly2195Cys	p.G2195C	ENST00000277541	NM_017617.3	2195	Ggc/Tgc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435630	18435630	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs758726931		P-0068257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	103	411	0	ENST00000266497.5:c.615G>T	p.Leu205Phe	p.L205F	ENST00000266497		205	ttG/ttT																																																																															
DICER1	23405	MSKCC	GRCh37	14	95598921	95598921	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0068257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	105	306	0	ENST00000343455.3:c.238G>T	p.Glu80Ter	p.E80*	ENST00000343455	NM_177438.2	80	Gag/Tag																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748154	72748154	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs368350763		P-0068257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	159	318	0	ENST00000357731.5:c.24G>C	p.Gln8His	p.Q8H	ENST00000357731	NM_173808.2	8	caG/caC																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562787	176562787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0068257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	219	499	1	ENST00000439151.2:c.683C>T	p.Pro228Leu	p.P228L	ENST00000439151	NM_022455.4	228	cCa/cTa																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134622	41134622	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	179	459	0	ENST00000379561.5:c.1006G>T	p.Asp336Tyr	p.D336Y	ENST00000379561	NM_002015.3	336	Gat/Tat																																																																															
ATM	472	MSKCC	GRCh37	11	108206683	108206683	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	79	270	0	ENST00000278616.4:c.8263T>C	p.Tyr2755His	p.Y2755H	ENST00000278616	NM_000051.3	2755	Tat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0068258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	24	285	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37090050	37090050	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	35	470	0	ENST00000231790.2:c.1939G>C	p.Val647Leu	p.V647L	ENST00000231790	NM_000249.3	647	Gtg/Ctg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273961	10273961	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0068258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	60	566	0	ENST00000330684.3:c.308A>G	p.Asp103Gly	p.D103G	ENST00000330684	NM_001134407.1	103	gAc/gGc																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045907	26045907	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			883	71	818	0	ENST00000540144.1:c.269T>G	p.Val90Gly	p.V90G	ENST00000540144	NM_003531.2	90	gTg/gGg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936756	150936756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			768	53	553	0	ENST00000271640.5:c.3792C>A	p.Asp1264Glu	p.D1264E	ENST00000271640	NM_001145415.1	1264	gaC/gaA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0068263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	90	264	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574026	7574026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0068269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	143	280	0	ENST00000269305.4:c.1001G>T	p.Gly334Val	p.G334V	ENST00000269305	NM_001126112.2	334	gGg/gTg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061082	38061082	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0068269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	346	456	0	ENST00000250448.2:c.907C>A	p.Pro303Thr	p.P303T	ENST00000250448	NM_004496.3	303	Ccc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577593	7577594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0068269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	120	318	0	ENST00000269305.4:c.687dup	p.Thr230TyrfsTer10	p.T230Yfs*10	ENST00000269305	NM_001126112.2	229	-/T																																																																															
JUN	3725	MSKCC	GRCh37	1	59248297	59248297	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1267587859		P-0068269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	48	523	0	ENST00000371222.2:c.446C>T	p.Ser149Leu	p.S149L	ENST00000371222	NM_002228.3	149	tCg/tTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40979319	40979319	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1217327426		P-0068293-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	81	350	0	ENST00000373198.4:c.1814C>T	p.Thr605Met	p.T605M	ENST00000373198	NM_133170.3	605	aCg/aTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70356311	70356311	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1042718707		P-0068293-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	24	384	0	ENST00000374080.3:c.5206G>A	p.Ala1736Thr	p.A1736T	ENST00000374080		1736	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0068293-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	34	330	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120623	94120623	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068293-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	160	458	0	ENST00000369303.4:c.428A>C	p.Tyr143Ser	p.Y143S	ENST00000369303	NM_004440.3	143	tAt/tCt																																																																															
IRF4	3662	MSKCC	GRCh37	6	401556	401556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0068293-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	42	484	0	ENST00000380956.4:c.878C>G	p.Pro293Arg	p.P293R	ENST00000380956	NM_001195286.1	293	cCc/cGc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661393	227661393	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751466820		P-0068323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	121	363	0	ENST00000305123.5:c.2062G>A	p.Ala688Thr	p.A688T	ENST00000305123	NM_005544.2	688	Gcc/Acc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5089759	5089759	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	88	258	0	ENST00000381652.3:c.2657A>G	p.His886Arg	p.H886R	ENST00000381652	NM_004972.3	886	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579300	7579325	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGGCAACTGACCGTGCAAGTCACAG	AGGGCAACTGACCGTGCAAGTCACAG	-			P-0068323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	80	284	0	ENST00000269305.4:c.362_375+12del		p.X121_splice	ENST00000269305	NM_001126112.2	121																																																																																
NUF2	83540	MSKCC	GRCh37	1	163298698	163298698	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0068323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	34	305	0	ENST00000271452.3:c.337+1G>T		p.X113_splice	ENST00000271452	NM_145697.2	113																																																																																
RICTOR	253260	MSKCC	GRCh37	5	38991145	38991145	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0068323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	45	267	0	ENST00000357387.3:c.489T>A	p.Ser163Arg	p.S163R	ENST00000357387	NM_152756.3	163	agT/agA																																																																															
NF1	4763	MSKCC	GRCh37	17	29556780	29556965	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTTTCATCTCTCTAGGGGGTCTGTCTTCTGGGCATTGATGGCAAATCATTAATGTATTTGTTCTTTCTTTAGGTTTTATTGACTGATACCAATACTCAATTTGTAGAACAAACCATAGCTATAATGAAGAACTTGCTAGATAATCATACTGAAGGCAGCTCTGAACATCTAGGGCAAGCTAGCAT	AGTTTCATCTCTCTAGGGGGTCTGTCTTCTGGGCATTGATGGCAAATCATTAATGTATTTGTTCTTTCTTTAGGTTTTATTGACTGATACCAATACTCAATTTGTAGAACAAACCATAGCTATAATGAAGAACTTGCTAGATAATCATACTGAAGGCAGCTCTGAACATCTAGGGCAAGCTAGCAT	-			P-0068323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	35	238	0	ENST00000358273.4:c.2851-73_2963del		p.X951_splice	ENST00000358273	NM_001042492.2	951																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151853060	151853061	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	T			P-0068323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	70	333	0	ENST00000262189.6:c.11894_11895delinsA	p.Gly3965AspfsTer22	p.G3965Dfs*22	ENST00000262189	NM_170606.2	3965	gGC/gA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0043892-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			445	77	484	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0043892-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			291	137	377	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866987936		P-0043892-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			447	63	500	0	ENST00000281708.4:c.1436G>T	p.Arg479Leu	p.R479L	ENST00000281708	NM_033632.3	479	cGa/cTa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112217	115112217	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766332681		P-0043892-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			525	67	600	0	ENST00000257566.3:c.1523C>T	p.Ala508Val	p.A508V	ENST00000257566	NM_016569.3	508	gCg/gTg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77103409	77103409	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043892-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			478	31	454	0	ENST00000356341.3:c.157C>T	p.Arg53Ter	p.R53*	ENST00000356341	NM_002576.4	53	Cga/Tga																																																																															
ALK	238	MSKCC	GRCh37	2	30143348	30143348	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1031804606		P-0043892-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			418	67	538	0	ENST00000389048.3:c.178G>T	p.Val60Leu	p.V60L	ENST00000389048	NM_004304.4	60	Gtg/Ttg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53254035	53254035	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043892-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			269	69	267	0	ENST00000375401.3:c.37G>T	p.Glu13Ter	p.E13*	ENST00000375401	NM_004187.3	13	Gag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949078	151949078	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043892-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			479	78	453	0	ENST00000262189.6:c.1567G>T	p.Glu523Ter	p.E523*	ENST00000262189	NM_170606.2	523	Gag/Tag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057089	180057089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043892-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			477	32	632	0	ENST00000261937.6:c.530G>T	p.Trp177Leu	p.W177L	ENST00000261937	NM_182925.4	177	tGg/tTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400269	139400269	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043892-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			574	64	586	0	ENST00000277541.6:c.4079del	p.Gly1360AlafsTer85	p.G1360Afs*85	ENST00000277541	NM_017617.3	1360	gGc/gc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470959	25470959	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043892-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			590	74	600	0	ENST00000264709.3:c.802G>T	p.Asp268Tyr	p.D268Y	ENST00000264709	NM_175629.2	268	Gat/Tat																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188275	32188275	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043892-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			594	113	670	0	ENST00000375023.3:c.1066C>A	p.Leu356Met	p.L356M	ENST00000375023	NM_004557.3	356	Ctg/Atg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390147	89390147	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043892-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			390	71	441	0	ENST00000336596.2:c.896A>T	p.Asp299Val	p.D299V	ENST00000336596	NM_005233.5	299	gAt/gTt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32172025	32172025	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043892-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			589	77	619	0	ENST00000375023.3:c.3007T>G	p.Cys1003Gly	p.C1003G	ENST00000375023	NM_004557.3	1003	Tgt/Ggt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472516	88472516	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043892-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			432	76	624	0	ENST00000360948.2:c.2039T>A	p.Leu680Gln	p.L680Q	ENST00000360948	NM_001012338.2	680	cTg/cAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484184	8484184	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043892-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			445	43	516	0	ENST00000356435.5:c.3348del	p.Lys1117ArgfsTer7	p.K1117Rfs*7	ENST00000356435		1116	ggG/gg																																																																															
RET	5979	MSKCC	GRCh37	10	43615056	43615056	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043892-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			605	60	723	1	ENST00000355710.3:c.2470C>A	p.Pro824Thr	p.P824T	ENST00000355710	NM_020975.4	824	Cct/Act																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239089	31239089	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043892-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			574	95	585	0	ENST00000376228.5:c.380T>A	p.Leu127Gln	p.L127Q	ENST00000376228	NM_002117.5	127	cTg/cAg																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38591620	38591624	+	frameshift_variant	Frame_Shift_Del	DEL	TCAAG	TCAAG	AAGG			P-0043892-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			315	52	387	0	ENST00000299084.4:c.79_82delinsAAG	p.Ser27LysfsTer13	p.S27Kfs*13	ENST00000299084	NM_152594.2	27	TCAAGt/AAGGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0067966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			856	350	597	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912660		P-0067966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			977	42	671	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa																																																																															
ALK	238	MSKCC	GRCh37	2	29519833	29519833	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			922	55	609	0	ENST00000389048.3:c.1738del	p.Met580TrpfsTer11	p.M580Wfs*11	ENST00000389048	NM_004304.4	580	Atg/tg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044923	47044923	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	30	363	0	ENST00000329236.7:c.2015del	p.Glu672GlyfsTer52	p.E672Gfs*52	ENST00000329236	NM_001204466.1	672	gAg/gg																																																																															
VHL	7428	MSKCC	GRCh37	3	10191512	10191512	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067986-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	10	376	0	ENST00000256474.2:c.505C>G	p.Leu169Val	p.L169V	ENST00000256474	NM_000551.3	169	Cta/Gta																																																																															
NSD1	64324	MSKCC	GRCh37	5	176700744	176700744	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs886041218		P-0067989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	10	352	0	ENST00000439151.2:c.5581C>T	p.Arg1861Ter	p.R1861*	ENST00000439151	NM_022455.4	1861	Cga/Tga																																																																															
MST1	4485	MSKCC	GRCh37	3	49723154	49723154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	10	471	0	ENST00000449682.2:c.1262C>T	p.Thr421Ile	p.T421I	ENST00000449682	NM_020998.3	421	aCc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0067994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	32	645	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	15	410	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0067994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	24	411	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0067994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	17	394	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0068026-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	23	227	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578400	7578400	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs751477326		P-0067733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	99	572	0	ENST00000269305.4:c.530C>G	p.Pro177Arg	p.P177R	ENST00000269305	NM_001126112.2	177	cCc/cGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952146	178952147	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	55	359	0	ENST00000263967.3:c.3203dup	p.Asn1068LysfsTer5	p.N1068Kfs*5	ENST00000263967	NM_006218.2	1067	-/A																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952006	178952006	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067780-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			293	348	367	0	ENST00000263967.3:c.3061T>C	p.Tyr1021His	p.Y1021H	ENST00000263967	NM_006218.2	1021	Tac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0067780-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			180	448	388	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189377	56189377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067780-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	105	332	0	ENST00000399503.3:c.4409C>T	p.Ala1470Val	p.A1470V	ENST00000399503	NM_005921.1	1470	gCt/gTt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391421	139391421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377112509		P-0067780-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	208	467	0	ENST00000277541.6:c.6770C>T	p.Ala2257Val	p.A2257V	ENST00000277541	NM_017617.3	2257	gCg/gTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181849	56181849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067780-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			375	91	306	0	ENST00000399503.3:c.4073C>T	p.Ser1358Leu	p.S1358L	ENST00000399503	NM_005921.1	1358	tCg/tTg																																																																															
MSI2	124540	MSKCC	GRCh37	17	55334876	55334876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067780-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1211	261	305	0	ENST00000284073.2:c.153G>A	p.Met51Ile	p.M51I	ENST00000284073	NM_138962.2	51	atG/atA																																																																															
MSI2	124540	MSKCC	GRCh37	17	55334866	55334866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067780-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1151	264	281	0	ENST00000284073.2:c.143G>A	p.Arg48Lys	p.R48K	ENST00000284073	NM_138962.2	48	aGa/aAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29496924	29496927	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-	rs1371379908		P-0067780-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			138	150	244	0	ENST00000358273.4:c.499_502del	p.Cys167GlnfsTer10	p.C167Qfs*10	ENST00000358273	NM_001042492.2	165	acTGTT/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519997		P-0067927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	19	406	0	ENST00000269305.4:c.332T>G	p.Leu111Arg	p.L111R	ENST00000269305	NM_001126112.2	111	cTg/cGg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6027032	6027032	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067927-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	19	240	0	ENST00000265849.7:c.1364C>G	p.Ser455Cys	p.S455C	ENST00000265849	NM_000535.5	455	tCt/tGt																																																																															
CCND1	595	MSKCC	GRCh37	11	69457939	69457939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067931-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1546	100	323	0	ENST00000227507.2:c.339G>A	p.Met113Ile	p.M113I	ENST00000227507	NM_053056.2	113	atG/atA																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143235887	143235887	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067931-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	55	205	0	ENST00000262992.4:c.401A>G	p.Lys134Arg	p.K134R	ENST00000262992	NM_001101669.1	134	aAg/aGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs760043106		P-0067932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	96	596	0	ENST00000269305.4:c.584T>G	p.Ile195Ser	p.I195S	ENST00000269305	NM_001126112.2	195	aTc/aGc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584537	187584537	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	21	475	0	ENST00000441802.2:c.3496C>G	p.Pro1166Ala	p.P1166A	ENST00000441802	NM_005245.3	1166	Cca/Gca																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589556	67589597	+	inframe_deletion	In_Frame_Del	DEL	ATAATATTGAAGCTGTAGGGAAAAAATTACATGAATATAACA	ATAATATTGAAGCTGTAGGGAAAAAATTACATGAATATAACA	-			P-0067932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	56	343	0	ENST00000274335.5:c.1319_1360del	p.Asp440_Thr454delinsAla	p.D440_T454delinsA	ENST00000274335		440	gATAATATTGAAGCTGTAGGGAAAAAATTACATGAATATAACAct/gct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0067918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	224	491	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499832	8499832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	141	391	1	ENST00000356435.5:c.2137G>T	p.Gly713Cys	p.G713C	ENST00000356435		713	Ggt/Tgt																																																																															
EP300	2033	MSKCC	GRCh37	22	41565575	41565575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	111	328	0	ENST00000263253.7:c.4241A>G	p.Tyr1414Cys	p.Y1414C	ENST00000263253	NM_001429.3	1414	tAt/tGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971133	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	217	490	0	ENST00000304494.5:c.225del	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	75	ccC/cc																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023099	33023099	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	309	429	0	ENST00000300177.4:c.208G>T	p.Gly70Trp	p.G70W	ENST00000300177	NM_001191322.1	70	Ggg/Tgg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89352025	89352025	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	202	427	1	ENST00000301030.4:c.925G>T	p.Ala309Ser	p.A309S	ENST00000301030	NM_001256183.1	309	Gca/Tca																																																																															
ROS1	6098	MSKCC	GRCh37	6	117641086	117641086	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	140	466	0	ENST00000368508.3:c.5885G>T	p.Gly1962Val	p.G1962V	ENST00000368508	NM_002944.2	1962	gGa/gTa																																																																															
APLNR	187	MSKCC	GRCh37	11	57003403	57003403	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T			P-0067918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	173	490	1	ENST00000257254.3:c.1076G>A	p.Gly359Asp	p.G359D	ENST00000257254		359	gGc/gAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151960214	151960214	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0067918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	10	96	0	ENST00000262189.6:c.1186C>T	p.Gln396Ter	p.Q396*	ENST00000262189	NM_170606.2	396	Caa/Taa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941475	71941475	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	181	471	0	ENST00000298229.2:c.1160G>C	p.Arg387Pro	p.R387P	ENST00000298229	NM_001567.3	387	cGg/cCg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056071	26056071	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	203	440	0	ENST00000343677.2:c.586A>G	p.Lys196Glu	p.K196E	ENST00000343677	NM_005319.3	196	Aag/Gag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41226504	41226504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	159	485	0	ENST00000357654.3:c.4519A>G	p.Arg1507Gly	p.R1507G	ENST00000357654	NM_007294.3	1507	Agg/Ggg																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612882	228612882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			732	341	656	0	ENST00000366696.1:c.145C>T	p.Leu49Phe	p.L49F	ENST00000366696	NM_003493.2	49	Ctt/Ttt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974719	21974724	+	inframe_deletion	In_Frame_Del	DEL	CGCCCC	CGCCCC	-			P-0060654-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			705	36	562	0	ENST00000304494.5:c.103_108del	p.Gly35_Ala36del	p.G35_A36del	ENST00000304494	NM_000077.4	35	GGGGCG/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0060654-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			809	33	580	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30682927	30682927	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0060654-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			646	63	448	0	ENST00000376406.3:c.26G>A	p.Trp9Ter	p.W9*	ENST00000376406	NM_014641.2	9	tGg/tAg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602799	10602799	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060654-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			815	29	601	0	ENST00000171111.5:c.779G>C	p.Arg260Pro	p.R260P	ENST00000171111	NM_203500.1	260	cGa/cCa																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0066825-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	42	430	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
RHOA	387	MSKCC	GRCh37	3	49412958	49412958	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066825-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			358	87	495	0	ENST00000418115.1:c.65T>G	p.Leu22Arg	p.L22R	ENST00000418115	NM_001664.2	22	cTc/cGc																																																																															
CBFB	865	MSKCC	GRCh37	16	67070596	67070596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066825-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			318	72	477	0	ENST00000412916.2:c.220C>T	p.Gln74Ter	p.Q74*	ENST00000412916		74	Cag/Tag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391695	139391695	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066825-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	52	655	0	ENST00000277541.6:c.6496C>A	p.Leu2166Met	p.L2166M	ENST00000277541	NM_017617.3	2166	Ctg/Atg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641629	23641629	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066825-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			315	23	467	0	ENST00000261584.4:c.1846G>C	p.Asp616His	p.D616H	ENST00000261584	NM_024675.3	616	Gat/Cat																																																																															
CDH1	999	MSKCC	GRCh37	16	68849624	68849624	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066825-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			293	67	569	0	ENST00000261769.5:c.1527del	p.Ala510ProfsTer12	p.A510Pfs*12	ENST00000261769	NM_004360.3	509	acT/ac																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696637	47696637	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067801-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			123	18	417	0	ENST00000347630.2:c.311T>G	p.Phe104Cys	p.F104C	ENST00000347630	NM_001007230.1	104	tTc/tGc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0067814-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	191	418	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0067814-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	146	537	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026095	71026095	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067814-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	51	315	0	ENST00000318789.4:c.1527G>A	p.Trp509Ter	p.W509*	ENST00000318789	NM_032682.5	509	tgG/tgA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249016	55249017	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCCACG			P-0067814-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	276	506	0	ENST00000275493.2:c.2315_2320dup	p.His773_Val774insAlaHis	p.H773_V774insAH	ENST00000275493	NM_005228.3	772	ccc/cCCCACGcc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410526	63410526	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs750449400		P-0067814-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	83	315	0	ENST00000330258.3:c.2641C>T	p.Arg881Ter	p.R881*	ENST00000330258	NM_152424.3	881	Cga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521276	8521276	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0067814-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	37	347	0	ENST00000356435.5:c.961+1G>T		p.X321_splice	ENST00000356435		321																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106545791	106545791	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067814-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	132	357	0	ENST00000359195.3:c.3268C>G	p.Leu1090Val	p.L1090V	ENST00000359195	NM_002649.2	1090	Ctt/Gtt																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845343	42845343	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067814-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	35	520	0	ENST00000398585.3:c.919C>T	p.Gln307Ter	p.Q307*	ENST00000398585	NM_001135099.1	307	Cag/Tag																																																																															
NBN	4683	MSKCC	GRCh37	8	90983465	90983465	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0067814-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	114	372	0	ENST00000265433.3:c.638C>G	p.Ser213Ter	p.S213*	ENST00000265433	NM_002485.4	213	tCa/tGa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28623894	28623894	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067814-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	69	473	0	ENST00000241453.7:c.760C>T	p.Gln254Ter	p.Q254*	ENST00000241453	NM_004119.2	254	Cag/Tag																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123239387	123239387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	77	404	1	ENST00000358487.5:c.2450G>A	p.Gly817Asp	p.G817D	ENST00000358487	NM_000141.4	817	gGc/gAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397516896		P-0067815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	70	353	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0067815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	190	448	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0067815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	101	403	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876565	35876565	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs141919625		P-0067815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			772	81	439	0	ENST00000303115.3:c.1357T>C	p.Ser453Pro	p.S453P	ENST00000303115	NM_002185.3	453	Tcc/Ccc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665360	138665360	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	54	485	0	ENST00000330315.3:c.205G>C	p.Glu69Gln	p.E69Q	ENST00000330315	NM_023067.3	69	Gag/Cag																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45856356	45856356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	61	485	0	ENST00000391945.4:c.1816G>A	p.Glu606Lys	p.E606K	ENST00000391945	NM_000400.3	606	Gag/Aag																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149245664	149245664	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	82	402	0	ENST00000360632.3:c.864G>C	p.Met288Ile	p.M288I	ENST00000360632	NM_015472.4	288	atG/atC																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198274631	198274631	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	70	440	0	ENST00000335508.6:c.767C>G	p.Pro256Arg	p.P256R	ENST00000335508	NM_012433.2	256	cCt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398262	25398262	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913538		P-0067815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	59	314	0	ENST00000256078.4:c.57G>C	p.Leu19Phe	p.L19F	ENST00000256078	NM_033360.2	19	ttG/ttC																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020724	26020724	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1426138687		P-0067815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	84	443	0	ENST00000357647.3:c.7C>T	p.Arg3Cys	p.R3C	ENST00000357647	NM_003529.2	3	Cgc/Tgc																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150933591	150933591	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149404089		P-0067815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	73	426	0	ENST00000271640.5:c.3053G>A	p.Arg1018Gln	p.R1018Q	ENST00000271640	NM_001145415.1	1018	cGa/cAa																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231474157	231474157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	61	394	1	ENST00000295050.7:c.28C>T	p.Arg10Trp	p.R10W	ENST00000295050	NM_032018.5	10	Cgg/Tgg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135796789	135796789	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	159	318	0	ENST00000298552.3:c.698del	p.Leu233Ter	p.L233*	ENST00000298552	NM_001162426.1	233	tTa/ta																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63968028	63968028	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	76	498	0	ENST00000295900.6:c.919C>G	p.Leu307Val	p.L307V	ENST00000295900	NM_000333.3	307	Ctg/Gtg																																																																															
KDR	3791	MSKCC	GRCh37	4	55976702	55976702	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	102	416	0	ENST00000263923.4:c.1123C>G	p.His375Asp	p.H375D	ENST00000263923	NM_002253.2	375	Cac/Gac																																																																															
CALR	811	MSKCC	GRCh37	19	13054689	13054759	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	GAGGAAGATGTCCCCGGCCAGGCCAAGGACGAGCTGTAGAGAGGCCTGCCTCCAGGGCTGGACTGAGGCCT	GAGGAAGATGTCCCCGGCCAGGCCAAGGACGAGCTGTAGAGAGGCCTGCCTCCAGGGCTGGACTGAGGCCT	-			P-0067815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	162	510	0	ENST00000316448.5:c.1219_*35del		p.*407*	ENST00000316448	NM_004343.3	406																																																																																
CHEK1	1111	MSKCC	GRCh37	11	125497702	125497702	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	88	370	0	ENST00000428830.2:c.266G>C	p.Gly89Ala	p.G89A	ENST00000428830	NM_001114121.2	89	gGa/gCa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851387	63851387	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			709	94	475	0	ENST00000279873.7:c.2165T>G	p.Leu722Arg	p.L722R	ENST00000279873	NM_032199.2	722	cTg/cGg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639452	3639452	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	66	511	0	ENST00000294008.3:c.4187G>C	p.Gly1396Ala	p.G1396A	ENST00000294008	NM_032444.2	1396	gGa/gCa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0067817-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	56	523	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
RET	5979	MSKCC	GRCh37	10	43598017	43598017	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1210452561		P-0067817-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			809	58	597	0	ENST00000355710.3:c.565C>T	p.Arg189Cys	p.R189C	ENST00000355710	NM_020975.4	189	Cgc/Tgc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68930087	68930087	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067817-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	38	398	0	ENST00000288368.4:c.148T>G	p.Leu50Val	p.L50V	ENST00000288368	NM_024870.2	50	Tta/Gta																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581304	48581305	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067817-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	37	509	0	ENST00000342988.3:c.609dup	p.Ser204IlefsTer2	p.S204Ifs*2	ENST00000342988	NM_005359.5	203	cca/ccAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0067817-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	141	327	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TET1	80312	MSKCC	GRCh37	10	70446339	70446339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374692138		P-0067817-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	166	581	0	ENST00000373644.4:c.5279C>T	p.Ala1760Val	p.A1760V	ENST00000373644	NM_030625.2	1760	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0067849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	56	317	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473708	67473708	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs387906855		P-0067849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	36	353	0	ENST00000327367.4:c.788C>T	p.Pro263Leu	p.P263L	ENST00000327367	NM_005902.3	263	cCc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0067849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	43	257	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48955394	48955394	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	44	245	0	ENST00000267163.4:c.1510C>A	p.Gln504Lys	p.Q504K	ENST00000267163	NM_000321.2	504	Cag/Aag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992689	68992689	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	31	345	0	ENST00000288368.4:c.1654A>T	p.Ser552Cys	p.S552C	ENST00000288368	NM_024870.2	552	Agc/Tgc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374979	45374980	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	TAC			P-0067853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	10	419	0	ENST00000262160.6:c.863_864insGTA	p.Glu288_Thr289insTer	p.E288_T289ins*	ENST00000262160	NM_005901.5	288	gaa/gaGTAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604776	48604776	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs377767382		P-0067853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	22	459	0	ENST00000342988.3:c.1598T>C	p.Leu533Pro	p.L533P	ENST00000342988	NM_005359.5	533	cTc/cCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0067853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			91	21	315	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913508	32913508	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0067853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	10	460	0	ENST00000380152.3:c.5016C>A	p.Tyr1672Ter	p.Y1672*	ENST00000380152		1672	taC/taA																																																																															
CDC73	79577	MSKCC	GRCh37	1	193181543	193181903	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTCCTGCAGCTACCACCTCTTTAATAACCATGCTTAATGCAAAAGACCTTCTACAGGACCTGAAGTAAGTAATTTATTAAACTATCCTGTACGTAGGATATTGAGATACCATTGGAAAATAGTAGTTACTGAATCAGTATTACTTATTTGGAAAAAACAAAATTTCGGTTTCTGTGCTATAGGCCTTACACATAGTATGAAGCATACATTTTCAAAACAGAATATATTCTTTTATATTTGGATCCTTTAGGGAAAGTTACAGAAACTTCTGGCTAAAGTCCTAATGAAAAAAGGTACTATCGTATTAACTTTTAATATGAATTGTTTTCTTTTGATGATTTTCTCTGAGAGAGCTTGAGG	ATTCCTGCAGCTACCACCTCTTTAATAACCATGCTTAATGCAAAAGACCTTCTACAGGACCTGAAGTAAGTAATTTATTAAACTATCCTGTACGTAGGATATTGAGATACCATTGGAAAATAGTAGTTACTGAATCAGTATTACTTATTTGGAAAAAACAAAATTTCGGTTTCTGTGCTATAGGCCTTACACATAGTATGAAGCATACATTTTCAAAACAGAATATATTCTTTTATATTTGGATCCTTTAGGGAAAGTTACAGAAACTTCTGGCTAAAGTCCTAATGAAAAAAGGTACTATCGTATTAACTTTTAATATGAATTGTTTTCTTTTGATGATTTTCTCTGAGAGAGCTTGAGG	-			P-0067853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	10	381	0	ENST00000367435.3:c.1091_1154+297del		p.X364_splice	ENST00000367435	NM_024529.4	364																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56478922	56478922	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	15	336	0	ENST00000267101.3:c.378C>G	p.Asn126Lys	p.N126K	ENST00000267101	NM_001982.3	126	aaC/aaG																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0067854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	9	443	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs387906846		P-0067854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	11	570	0	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2954975	2954975	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368119340		P-0067854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	24	560	5	ENST00000396946.4:c.2735G>A	p.Arg912Gln	p.R912Q	ENST00000396946	NM_032415.4	912	cGg/cAg																																																																															
ALK	238	MSKCC	GRCh37	2	29917794	29917794	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201750304		P-0067854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	13	499	0	ENST00000389048.3:c.874C>T	p.Arg292Cys	p.R292C	ENST00000389048	NM_004304.4	292	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578244	7578252	+	inframe_deletion	In_Frame_Del	DEL	CGCAAATTT	CGCAAATTT	-			P-0067854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	8	514	0	ENST00000269305.4:c.597_605del	p.Asn200_Arg202del	p.N200_R202del	ENST00000269305	NM_001126112.2	199	ggAAATTTGCGt/ggt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30102152	30102152	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs775376594		P-0067742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	16	330	0	ENST00000331968.5:c.1315C>T	p.Arg439Trp	p.R439W	ENST00000331968	NM_002742.2	439	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0067742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	188	459	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175416	112175417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0067742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	43	457	0	ENST00000257430.4:c.4126dup	p.Tyr1376LeufsTer10	p.Y1376Lfs*10	ENST00000257430	NM_000038.5	1375	-/T																																																																															
RECQL	5965	MSKCC	GRCh37	12	21652495	21652495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201737130		P-0067742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	16	269	0	ENST00000421138.2:c.10G>A	p.Val4Ile	p.V4I	ENST00000421138		4	Gtt/Att																																																																															
APC	324	MSKCC	GRCh37	5	112174796	112174798	+	frameshift_variant	Frame_Shift_Del	DEL	GAG	GAG	AA			P-0067742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	34	503	0	ENST00000257430.4:c.3505_3507delinsAA	p.Glu1169LysfsTer13	p.E1169Kfs*13	ENST00000257430	NM_000038.5	1169	GAG/AA																																																																															
NADK	65220	MSKCC	GRCh37	1	1687996	1687996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200152611		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	77	639	0	ENST00000341426.5:c.445G>A	p.Ala149Thr	p.A149T	ENST00000341426	NM_023018.4	149	Gcc/Acc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9776087	9776087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755725121		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	21	601	0	ENST00000377346.4:c.551G>A	p.Arg184Gln	p.R184Q	ENST00000377346	NM_005026.3	184	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27059236	27059236	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	89	434	0	ENST00000324856.7:c.1873C>T	p.Gln625Ter	p.Q625*	ENST00000324856	NM_006015.4	625	Caa/Taa																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400830	72400830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	86	486	1	ENST00000357731.5:c.341G>A	p.Gly114Asp	p.G114D	ENST00000357731	NM_173808.2	114	gGc/gAc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	80	583	0	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	108	624	0	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307393	118307394	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	11	292	0	ENST00000534358.1:c.173dup	p.Ala59GlyfsTer88	p.A59Gfs*88	ENST00000534358	NM_005933.3	56	tcc/tCcc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	102	593	9	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	76	356	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420204	49420204	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	82	676	0	ENST00000301067.7:c.15545del	p.Gly5182AlafsTer61	p.G5182Afs*61	ENST00000301067	NM_003482.3	5182	gGc/gc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	37	678	7	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	164	535	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467143	99467143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	31	490	0	ENST00000268035.6:c.2524C>T	p.Pro842Ser	p.P842S	ENST00000268035	NM_000875.3	842	Cca/Tca																																																																															
TSC2	7249	MSKCC	GRCh37	16	2127724	2127724	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397515306		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	105	615	0	ENST00000219476.3:c.2963G>A	p.Arg988His	p.R988H	ENST00000219476	NM_000548.3	988	cGc/cAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136823	2136823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	33	682	0	ENST00000219476.3:c.4940C>T	p.Ser1647Phe	p.S1647F	ENST00000219476	NM_000548.3	1647	tCc/tTc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783767	50783767	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375455772		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	43	507	0	ENST00000398568.2:c.158G>A	p.Arg53His	p.R53H	ENST00000398568	NM_001042412.1	53	cGt/cAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827474	72827474	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749152788		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	50	542	0	ENST00000268489.5:c.9107G>A	p.Arg3036Gln	p.R3036Q	ENST00000268489	NM_006885.3	3036	cGg/cAg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	89	573	5	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	203	799	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	51	586	5	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222490	2222490	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs995952663		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	100	584	0	ENST00000398665.3:c.3322C>T	p.Arg1108Ter	p.R1108*	ENST00000398665	NM_032482.2	1108	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214637	5214637	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757423838		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	98	649	0	ENST00000357368.4:c.4429C>T	p.Arg1477Cys	p.R1477C	ENST00000357368	NM_002850.3	1477	Cgt/Tgt																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6213975	6213976	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs772076449		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	30	545	0	ENST00000252674.7:c.1381dup	p.Gln461ProfsTer23	p.Q461Pfs*23	ENST00000252674	NM_005934.3	461	cag/cCag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311682	15311684	+	inframe_deletion	In_Frame_Del	DEL	CGG	CGG	-	rs1279981032		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	68	818	8	ENST00000263388.2:c.33_35del	p.Arg13del	p.R13del	ENST00000263388	NM_000435.2	11	cgCCGt/cgt																																																																															
UPF1	5976	MSKCC	GRCh37	19	18974351	18974351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1249690376		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	106	677	0	ENST00000262803.5:c.2705C>T	p.Pro902Leu	p.P902L	ENST00000262803	NM_002911.3	902	cCg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211899	36211899	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	102	707	5	ENST00000222270.7:c.1656del	p.Lys553AsnfsTer52	p.K553Nfs*52	ENST00000222270	NM_014727.1	550	gaC/ga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	55	885	0	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224183	36224183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	37	452	0	ENST00000222270.7:c.6733G>A	p.Val2245Met	p.V2245M	ENST00000222270	NM_014727.1	2245	Gtg/Atg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867709	45867709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200895828		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	67	820	3	ENST00000391945.4:c.691G>A	p.Val231Met	p.V231M	ENST00000391945	NM_000400.3	231	Gtg/Atg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025856	48025857	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	43	555	0	ENST00000234420.5:c.741dup	p.Arg248ThrfsTer8	p.R248Tfs*8	ENST00000234420	NM_000179.2	245	ata/atAa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	102	597	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190660670	190660670	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	33	490	0	ENST00000441310.2:c.308T>C	p.Ile103Thr	p.I103T	ENST00000441310	NM_000534.4	103	aTa/aCa																																																																															
IDH1	3417	MSKCC	GRCh37	2	209108185	209108185	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751364381		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	55	392	0	ENST00000345146.2:c.664C>T	p.Arg222Cys	p.R222C	ENST00000345146	NM_005896.2	222	Cgt/Tgt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989591	212989592	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	78	441	0	ENST00000342788.4:c.119_120del	p.Ser40Ter	p.S40*	ENST00000342788	NM_005235.2	40	tCT/t																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	85	660	18	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21345972	21345972	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1346699262		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	43	710	0	ENST00000215739.8:c.847C>T	p.Arg283Trp	p.R283W	ENST00000215739	NM_006767.3	283	Cgg/Tgg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374245	138374245	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	25	485	0	ENST00000289153.2:c.3199G>T	p.Asp1067Tyr	p.D1067Y	ENST00000289153	NM_006219.2	1067	Gac/Tac																																																																															
BCL6	604	MSKCC	GRCh37	3	187446270	187446270	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	34	625	1	ENST00000232014.4:c.1418del	p.Pro473ArgfsTer117	p.P473Rfs*117	ENST00000232014	NM_001130845.1	473	cCg/cg																																																																															
TET2	54790	MSKCC	GRCh37	4	106194022	106194022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	117	486	1	ENST00000380013.4:c.4484C>T	p.Ala1495Val	p.A1495V	ENST00000380013	NM_001127208.2	1495	gCc/gTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178258	56178258	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	53	562	0	ENST00000399503.3:c.3236del	p.Asn1079IlefsTer3	p.N1079Ifs*3	ENST00000399503	NM_005921.1	1077	tcA/tc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	80	397	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520241	176520241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	38	652	0	ENST00000292408.4:c.1160C>T	p.Ala387Val	p.A387V	ENST00000292408	NM_213647.1	387	gCc/gTc																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402540	20402540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	41	525	1	ENST00000346618.3:c.77C>T	p.Ala26Val	p.A26V	ENST00000346618	NM_001949.4	26	gCc/gTc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323262	31323262	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77665001		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	60	314	0	ENST00000412585.2:c.727C>T	p.Arg243Trp	p.R243W	ENST00000412585	NM_005514.6	243	Cgg/Tgg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	76	556	4	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
MTAP	4507	MSKCC	GRCh37	9	21854745	21854745	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	80	539	0	ENST00000380172.4:c.571del	p.Ala191ArgfsTer6	p.A191Rfs*6	ENST00000380172	NM_002451.3	189	tGg/tg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	83	638	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128420047	128420047	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	76	428	1	ENST00000265960.3:c.381del	p.Lys127AsnfsTer20	p.K127Nfs*20	ENST00000265960	NM_001006617.1	127	aaA/aa																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	34	447	6	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821613	72821618	+	inframe_deletion	In_Frame_Del	DEL	CCGCCA	CCGCCA	-	rs776006250		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	27	739	0	ENST00000268489.5:c.10557_10562del	p.Gly3526_Gly3527del	p.G3526_G3527del	ENST00000268489	NM_006885.3	3519	ggTGGCGGc/ggc																																																																															
NADK	65220	MSKCC	GRCh37	1	1685629	1685629	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	104	716	0	ENST00000341426.5:c.962del	p.Pro321ArgfsTer15	p.P321Rfs*15	ENST00000341426	NM_023018.4	321	cCg/cg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150900312	150900312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	107	590	0	ENST00000271640.5:c.122G>A	p.Arg41Gln	p.R41Q	ENST00000271640	NM_001145415.1	41	cGg/cAg																																																																															
CTR9	9646	MSKCC	GRCh37	11	10776563	10776563	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141469100		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	101	539	0	ENST00000361367.2:c.203G>A	p.Arg68His	p.R68H	ENST00000361367	NM_014633.3	68	cGt/cAt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572273	64572273	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765306552		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	125	876	0	ENST00000337652.1:c.1381C>T	p.Arg461Cys	p.R461C	ENST00000337652	NM_130803.2	461	Cgc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108129773	108129773	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	100	418	0	ENST00000278616.4:c.2437A>G	p.Asn813Asp	p.N813D	ENST00000278616	NM_000051.3	813	Aat/Gat																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287243	46287244	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	29	596	0	ENST00000334344.6:c.5192dup	p.Ala1732GlyfsTer28	p.A1732Gfs*28	ENST00000334344	NM_152641.2	1730	caa/cAaa																																																																															
SETD8	387893	MSKCC	GRCh37	12	123868747	123868747	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	68	550	0	ENST00000330479.4:c.2T>C	p.Met1?	p.M1?	ENST00000330479	NM_020382.3	1	aTg/aCg																																																																															
SCG5	6447	MSKCC	GRCh37	15	32976815	32976815	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	80	457	0	ENST00000300175.4:c.434A>G	p.Gln145Arg	p.Q145R	ENST00000300175	NM_001144757.1	145	cAg/cGg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30322588	30322588	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	38	379	0	ENST00000322652.5:c.1601A>C	p.Lys534Thr	p.K534T	ENST00000322652	NM_015355.2	534	aAa/aCa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41222956	41222956	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	89	602	0	ENST00000357654.3:c.4975C>A	p.Pro1659Thr	p.P1659T	ENST00000357654	NM_007294.3	1659	Cca/Aca																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245274	41245275	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	131	537	0	ENST00000357654.3:c.2273dup	p.Leu758PhefsTer4	p.L758Ffs*4	ENST00000357654	NM_007294.3	758	ttg/ttTg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39613805	39613805	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1289206436		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	35	378	0	ENST00000262039.4:c.1723G>A	p.Ala575Thr	p.A575T	ENST00000262039	NM_002647.2	575	Gca/Aca																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265694	10265694	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	48	633	0	ENST00000340748.4:c.1483T>C	p.Tyr495His	p.Y495H	ENST00000340748		495	Tat/Cat																																																																															
ERF	2077	MSKCC	GRCh37	19	42752717	42752718	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	44	642	0	ENST00000222329.4:c.1546dup	p.Glu516GlyfsTer18	p.E516Gfs*18	ENST00000222329	NM_006494.2	516	gag/gGag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212568829	212568829	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	67	379	0	ENST00000342788.4:c.1289G>T	p.Ser430Ile	p.S430I	ENST00000342788	NM_005235.2	430	aGt/aTt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023763	31023763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	33	565	0	ENST00000375687.4:c.3248C>T	p.Ala1083Val	p.A1083V	ENST00000375687	NM_015338.5	1083	gCc/gTc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37081762	37081762	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	178	447	0	ENST00000231790.2:c.1644C>A	p.Tyr548Ter	p.Y548*	ENST00000231790	NM_000249.3	548	taC/taA																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138431137	138431137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	101	370	0	ENST00000289153.2:c.1312G>A	p.Val438Ile	p.V438I	ENST00000289153	NM_006219.2	438	Gta/Ata																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383988	84383988	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs35378950		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	33	425	0	ENST00000321945.7:c.864del	p.Pro289GlnfsTer13	p.P289Qfs*13	ENST00000321945	NM_139076.2	288	ttT/tt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245464	153245464	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150160525		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	70	529	0	ENST00000281708.4:c.1727C>T	p.Thr576Met	p.T576M	ENST00000281708	NM_033632.3	576	aCg/aTg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323135	31323135	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	61	783	1	ENST00000412585.2:c.854T>C	p.Val285Ala	p.V285A	ENST00000412585	NM_005514.6	285	gTa/gCa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020387	69020387	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	42	485	0	ENST00000288368.4:c.2759A>G	p.Gln920Arg	p.Q920R	ENST00000288368	NM_024870.2	920	cAg/cGg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128246848	128246848	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139882483		P-0067746-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	85	497	0	ENST00000265960.3:c.1081G>A	p.Gly361Arg	p.G361R	ENST00000265960	NM_001006617.1	361	Ggg/Agg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0067821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	16	354	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578400	7578400	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs751477326		P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			329	88	447	0	ENST00000269305.4:c.530C>G	p.Pro177Arg	p.P177R	ENST00000269305	NM_001126112.2	177	cCc/cGc																																																																															
ATRX	546	MSKCC	GRCh37	X	76907792	76907792	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			107	27	168	0	ENST00000373344.5:c.4369G>T	p.Glu1457Ter	p.E1457*	ENST00000373344	NM_000489.3	1457	Gag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714412	40714412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			328	74	374	0	ENST00000373198.4:c.3985G>A	p.Glu1329Lys	p.E1329K	ENST00000373198	NM_133170.3	1329	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434073	49434074	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			333	27	426	0	ENST00000301067.7:c.7479dup	p.Phe2494ValfsTer12	p.F2494Vfs*12	ENST00000301067	NM_003482.3	2493	-/G																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498492	89498492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			161	47	364	0	ENST00000336596.2:c.2464G>A	p.Glu822Lys	p.E822K	ENST00000336596	NM_005233.5	822	Gag/Aag																																																																															
PGR	5241	MSKCC	GRCh37	11	100912785	100912785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			221	19	307	0	ENST00000325455.5:c.2537C>T	p.Ser846Leu	p.S846L	ENST00000325455	NM_001202474.3	846	tCa/tTa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212568841	212568841	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			152	18	324	0	ENST00000342788.4:c.1277G>T	p.Arg426Ile	p.R426I	ENST00000342788	NM_005235.2	426	aGa/aTa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950720	38950720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			193	34	379	0	ENST00000357387.3:c.3230G>A	p.Gly1077Glu	p.G1077E	ENST00000357387	NM_152756.3	1077	gGa/gAa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231077	98231077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			241	117	427	0	ENST00000331920.6:c.2206G>T	p.Ala736Ser	p.A736S	ENST00000331920	NM_000264.3	736	Gct/Tct																																																																															
RB1	5925	MSKCC	GRCh37	13	48939091	48939091	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			123	22	229	0	ENST00000267163.4:c.923C>G	p.Ser308Cys	p.S308C	ENST00000267163	NM_000321.2	308	tCt/tGt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527734	157527734	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			322	35	426	0	ENST00000346085.5:c.5459A>T	p.Gln1820Leu	p.Q1820L	ENST00000346085	NM_020732.3	1820	cAg/cTg																																																																															
PARK2	5071	MSKCC	GRCh37	6	161771154	161771154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			262	31	314	0	ENST00000366898.1:c.1375G>T	p.Gly459Trp	p.G459W	ENST00000366898	NM_004562.2	459	Ggg/Tgg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212252696	212252696	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			174	29	369	2	ENST00000342788.4:c.3157C>A	p.Pro1053Thr	p.P1053T	ENST00000342788	NM_005235.2	1053	Cct/Act																																																																															
LYN	4067	MSKCC	GRCh37	8	56879272	56879272	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			282	70	332	0	ENST00000519728.1:c.791-2A>T		p.X264_splice	ENST00000519728	NM_002350.3	264																																																																																
DDR2	4921	MSKCC	GRCh37	1	162735793	162735793	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			279	23	435	0	ENST00000367921.3:c.1102G>A	p.Ala368Thr	p.A368T	ENST00000367921	NM_006182.2	368	Gct/Act																																																																															
EZH1	2145	MSKCC	GRCh37	17	40858152	40858152	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			380	36	355	0	ENST00000428826.2:c.1712A>T	p.Gln571Leu	p.Q571L	ENST00000428826		571	cAa/cTa																																																																															
TERT	7015	MSKCC	GRCh37	5	1282725	1282725	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			285	101	420	0	ENST00000310581.5:c.1588C>G	p.Pro530Ala	p.P530A	ENST00000310581	NM_198253.2	530	Ccg/Gcg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141453	11141453	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			284	68	430	0	ENST00000344626.4:c.3430G>T	p.Glu1144Ter	p.E1144*	ENST00000344626	NM_003072.3	1144	Gag/Tag																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38279366	38279366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			245	46	447	0	ENST00000425967.3:c.1123G>T	p.Gly375Cys	p.G375C	ENST00000425967	NM_001174067.1	375	Ggt/Tgt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222200	2222200	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			280	90	512	0	ENST00000398665.3:c.3033del	p.Gly1013ValfsTer55	p.G1013Vfs*55	ENST00000398665	NM_032482.2	1011	cGg/cg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306511	41306511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			287	20	292	0	ENST00000373198.4:c.1148G>A	p.Cys383Tyr	p.C383Y	ENST00000373198	NM_133170.3	383	tGt/tAt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465603	99465603	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1391007042		P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			260	40	405	0	ENST00000268035.6:c.2428G>T	p.Ala810Ser	p.A810S	ENST00000268035	NM_000875.3	810	Gct/Tct																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422042	81422042	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			265	62	389	0	ENST00000298171.2:c.18G>C	p.Leu6Phe	p.L6F	ENST00000298171	NM_000369.2	6	ttG/ttC																																																																															
PARK2	5071	MSKCC	GRCh37	6	161771144	161771144	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			231	28	307	0	ENST00000366898.1:c.1385G>C	p.Trp462Ser	p.W462S	ENST00000366898	NM_004562.2	462	tGg/tCg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858660	9858660	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			238	18	483	0	ENST00000330684.3:c.2741G>T	p.Arg914Ile	p.R914I	ENST00000330684	NM_001134407.1	914	aGa/aTa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245316	53245316	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			111	36	194	0	ENST00000375401.3:c.721del	p.Ala241GlnfsTer5	p.A241Qfs*5	ENST00000375401	NM_004187.3	241	Gca/ca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419971	41419971	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051960-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			388	33	433	0	ENST00000373198.4:c.350C>A	p.Pro117Gln	p.P117Q	ENST00000373198	NM_133170.3	117	cCa/cAa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0066821-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			86	40	355	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0066821-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			247	91	580	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578397	7578398	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0066821-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			262	82	570	0	ENST00000269305.4:c.532dup	p.His178ProfsTer3	p.H178Pfs*3	ENST00000269305	NM_001126112.2	178	cac/cCac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552822		P-0066821-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			206	99	527	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851193	63851193	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066821-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			370	45	507	0	ENST00000279873.7:c.1971C>G	p.Phe657Leu	p.F657L	ENST00000279873	NM_032199.2	657	ttC/ttG																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280627	41280627	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0066821-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			324	22	491	0	ENST00000349496.5:c.2141del	p.Pro714LeufsTer21	p.P714Lfs*21	ENST00000349496	NM_001904.3	714	Cct/ct																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180473	94180475	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-			P-0066821-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			362	71	387	0	ENST00000323929.3:c.1693_1695del	p.Ala565del	p.A565del	ENST00000323929	NM_005591.3	565	GCA/-																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143326466	143326466	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066821-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	73	371	0	ENST00000262992.4:c.148C>G	p.Leu50Val	p.L50V	ENST00000262992	NM_001101669.1	50	Ctc/Gtc																																																																															
NF1	4763	MSKCC	GRCh37	17	29653048	29653048	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0066821-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			400	61	505	0	ENST00000358273.4:c.5046T>A	p.Cys1682Ter	p.C1682*	ENST00000358273	NM_001042492.2	1682	tgT/tgA																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259613	89259613	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066821-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			287	80	485	0	ENST00000336596.2:c.757C>A	p.Pro253Thr	p.P253T	ENST00000336596	NM_005233.5	253	Ccc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0067339-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			471	56	412	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974741	21974815	+	frameshift_variant	Frame_Shift_Del	DEL	CGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCC	CGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCC	GA			P-0067339-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			633	39	728	2	ENST00000304494.5:c.12_86delinsTC	p.Ala5ArgfsTer24	p.A5Rfs*24	ENST00000304494	NM_000077.4	4	gcGGCGGGGAGCAGCATGGAGCCTTCGGCTGACTGGCTGGCCACGGCCGCGGCCCGGGGTCGGGTAGAGGAGGTGCGg/gcTCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0067375-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	160	433	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266831	18266831	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1011337615		P-0067375-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	69	371	0	ENST00000222254.8:c.142G>C	p.Glu48Gln	p.E48Q	ENST00000222254	NM_005027.3	48	Gag/Cag																																																																															
PARP1	142	MSKCC	GRCh37	1	226564895	226564895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067375-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	68	362	0	ENST00000366794.5:c.1855G>A	p.Glu619Lys	p.E619K	ENST00000366794	NM_001618.3	619	Gaa/Aaa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46281303	46281303	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0067375-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	60	325	0	ENST00000371998.3:c.4100C>G	p.Ser1367Ter	p.S1367*	ENST00000371998		1367	tCa/tGa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41234468	41234468	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067375-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	75	388	0	ENST00000357654.3:c.4310C>G	p.Ser1437Cys	p.S1437C	ENST00000357654	NM_007294.3	1437	tCt/tGt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299135	15299135	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067375-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	88	375	0	ENST00000263388.2:c.1403T>G	p.Val468Gly	p.V468G	ENST00000263388	NM_000435.2	468	gTg/gGg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115262240	115262240	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067375-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	132	352	0	ENST00000438362.2:c.2314del	p.Arg772AlafsTer32	p.R772Afs*32	ENST00000438362	NM_001242891.1	772	Cgc/gc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200481	67200497	+	frameshift_variant	Frame_Shift_Del	DEL	CACTCACACCTTCTGCG	CACTCACACCTTCTGCG	-			P-0067375-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	74	439	0	ENST00000312629.5:c.675_691del	p.Thr226HisfsTer3	p.T226Hfs*3	ENST00000312629	NM_003952.2	225	gtCACTCACACCTTCTGCGgc/gtgc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326768	62326768	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	C			P-0067375-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	37	422	0	ENST00000482936.1:c.3587G>C	p.Gly1196Ala	p.G1196A	ENST00000482936		1196	gGc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067509-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			210	100	544	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041402	47041402	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0067509-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			127	31	291	0	ENST00000329236.7:c.1512T>G	p.Tyr504Ter	p.Y504*	ENST00000329236	NM_001204466.1	504	taT/taG																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190359	32190359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067509-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			244	74	452	0	ENST00000375023.3:c.380G>A	p.Cys127Tyr	p.C127Y	ENST00000375023	NM_004557.3	127	tGt/tAt																																																																															
CCND3	896	MSKCC	GRCh37	6	41909237	41909237	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067509-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			261	67	455	1	ENST00000372991.4:c.151del	p.Glu51ArgfsTer32	p.E51Rfs*32	ENST00000372991	NM_001760.3	51	Gag/ag																																																																															
ATM	472	MSKCC	GRCh37	11	108196238	108196239	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCTATACT			P-0067539-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			234	19	240	0	ENST00000278616.4:c.6775_6782dup	p.Ala2262LeufsTer51	p.A2262Lfs*51	ENST00000278616	NM_000051.3	2258	-/TCTATACT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0067614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	107	268	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0067614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	211	393	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0067614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	243	559	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
RB1	5925	MSKCC	GRCh37	13	49030486	49030486	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0067614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	105	405	0	ENST00000267163.4:c.1960+1G>A		p.X654_splice	ENST00000267163	NM_000321.2	654																																																																																
BARD1	580	MSKCC	GRCh37	2	215674233	215674233	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs864622206		P-0067614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	77	367	0	ENST00000260947.4:c.61C>G	p.Arg21Gly	p.R21G	ENST00000260947	NM_000465.2	21	Cgt/Ggt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27059176	27059176	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	112	336	0	ENST00000324856.7:c.1813C>T	p.Gln605Ter	p.Q605*	ENST00000324856	NM_006015.4	605	Caa/Taa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50917056	50917056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	129	579	0	ENST00000440232.2:c.2308G>A	p.Glu770Lys	p.E770K	ENST00000440232	NM_002691.3	770	Gag/Aag																																																																															
RET	5979	MSKCC	GRCh37	10	43572711	43572711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	34	371	0	ENST00000355710.3:c.5C>T	p.Ala2Val	p.A2V	ENST00000355710	NM_020975.4	2	gCg/gTg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117641147	117641147	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370269692		P-0067614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	42	595	0	ENST00000368508.3:c.5824C>T	p.Arg1942Trp	p.R1942W	ENST00000368508	NM_002944.2	1942	Cgg/Tgg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157511274	157511274	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	104	508	0	ENST00000346085.5:c.3792G>C	p.Met1264Ile	p.M1264I	ENST00000346085	NM_020732.3	1264	atG/atC																																																																															
TSC2	7249	MSKCC	GRCh37	16	2115634	2115634	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0067614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	70	426	0	ENST00000219476.3:c.1714C>T	p.Gln572Ter	p.Q572*	ENST00000219476	NM_000548.3	572	Cag/Tag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118372495	118372495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	99	550	0	ENST00000534358.1:c.6428C>T	p.Ser2143Leu	p.S2143L	ENST00000534358	NM_005933.3	2143	tCa/tTa																																																																															
TET1	80312	MSKCC	GRCh37	10	70451413	70451413	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	100	490	0	ENST00000373644.4:c.6253G>C	p.Asp2085His	p.D2085H	ENST00000373644	NM_030625.2	2085	Gac/Cac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858147	9858147	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	21	518	0	ENST00000330684.3:c.3254A>C	p.Asn1085Thr	p.N1085T	ENST00000330684	NM_001134407.1	1085	aAc/aCc																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6214028	6214028	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1285224641		P-0067614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	18	433	0	ENST00000252674.7:c.1329G>C	p.Glu443Asp	p.E443D	ENST00000252674	NM_005934.3	443	gaG/gaC																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22008871	22008871	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	85	473	0	ENST00000276925.6:c.82G>C	p.Glu28Gln	p.E28Q	ENST00000276925	NM_004936.3	28	Gag/Cag																																																																															
ATM	472	MSKCC	GRCh37	11	108158390	108158390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	30	412	0	ENST00000278616.4:c.4057G>A	p.Glu1353Lys	p.E1353K	ENST00000278616	NM_000051.3	1353	Gag/Aag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346796	89346796	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0067614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	59	519	0	ENST00000301030.4:c.6154G>T	p.Glu2052Ter	p.E2052*	ENST00000301030	NM_001256183.1	2052	Gag/Tag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31485039	31485039	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	273	367	0	ENST00000344624.3:c.1945del	p.Ser649HisfsTer38	p.S649Hfs*38	ENST00000344624		649	Tca/ca																																																																															
FANCA	2175	MSKCC	GRCh37	16	89828361	89828361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	57	278	0	ENST00000389301.3:c.2848G>A	p.Glu950Lys	p.E950K	ENST00000389301	NM_000135.2	950	Gaa/Aaa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532463	63532463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	77	558	0	ENST00000307078.5:c.2116G>C	p.Glu706Gln	p.E706Q	ENST00000307078	NM_004655.3	706	Gag/Cag																																																																															
RAF1	5894	MSKCC	GRCh37	3	12641293	12641293	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	41	426	0	ENST00000251849.4:c.1005G>C	p.Gln335His	p.Q335H	ENST00000251849	NM_002880.3	335	caG/caC																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15971351	15971351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	69	528	0	ENST00000268712.3:c.4598C>T	p.Ser1533Phe	p.S1533F	ENST00000268712	NM_006311.3	1533	tCt/tTt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89871712	89871712	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148419748		P-0067614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	25	513	0	ENST00000389301.3:c.685G>A	p.Asp229Asn	p.D229N	ENST00000389301	NM_000135.2	229	Gac/Aac																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180584	56180584	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	106	436	0	ENST00000399503.3:c.3913A>G	p.Asn1305Asp	p.N1305D	ENST00000399503	NM_005921.1	1305	Aac/Gac																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177769	56177770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0067617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	122	494	0	ENST00000399503.3:c.2744dup	p.Leu915PhefsTer15	p.L915Ffs*15	ENST00000399503	NM_005921.1	914	-/T																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0067639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	18	440	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0067642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	146	378	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
CDH1	999	MSKCC	GRCh37	16	68771319	68771319	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0067642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	124	393	0	ENST00000261769.5:c.1A>G	p.Met1?	p.M1?	ENST00000261769	NM_004360.3	1	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0067643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	146	432	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445149	49445149	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	193	667	2	ENST00000301067.7:c.2317del	p.Gln773SerfsTer157	p.Q773Sfs*157	ENST00000301067	NM_003482.3	773	Cag/ag																																																																															
HRAS	3265	MSKCC	GRCh37	11	534288	534288	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs104894230		P-0067643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	134	392	0	ENST00000311189.7:c.35G>T	p.Gly12Val	p.G12V	ENST00000311189		12	gGc/gTc																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813376	102813376	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	171	427	0	ENST00000307046.8:c.313C>A	p.Leu105Met	p.L105M	ENST00000307046	NM_001111285.1	105	Ctg/Atg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266695	41266695	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	163	426	0	ENST00000349496.5:c.492C>A	p.Asp164Glu	p.D164E	ENST00000349496	NM_001904.3	164	gaC/gaA																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455124	50455124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1432192241		P-0067643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	120	308	0	ENST00000331340.3:c.671A>G	p.His224Arg	p.H224R	ENST00000331340	NM_006060.4	224	cAc/cGc																																																																															
AR	367	MSKCC	GRCh37	X	66765695	66765695	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	209	561	0	ENST00000374690.3:c.707C>G	p.Ala236Gly	p.A236G	ENST00000374690	NM_000044.3	236	gCc/gGc																																																																															
POT1	25913	MSKCC	GRCh37	7	124481189	124481189	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	99	340	0	ENST00000357628.3:c.1207G>T	p.Asp403Tyr	p.D403Y	ENST00000357628	NM_015450.2	403	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0067651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	13	292	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0067654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	174	381	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575219	48575219	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0067654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	81	192	0	ENST00000342988.3:c.413C>A	p.Ser138Ter	p.S138*	ENST00000342988	NM_005359.5	138	tCa/tAa																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271304	26271329	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCACCAAGTAGGCCTCGCAGGCCT	CCCCACCAAGTAGGCCTCGCAGGCCT	-			P-0067654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	246	439	0	ENST00000305910.3:c.284_309del	p.Glu95AlafsTer3	p.E95Afs*3	ENST00000305910	NM_003534.2	95	gAGGCCTGCGAGGCCTACTTGGTGGGG/g																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936149	71936149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	178	213	0	ENST00000298229.2:c.121G>A	p.Asp41Asn	p.D41N	ENST00000298229	NM_001567.3	41	Gat/Aat																																																																															
ABL1	25	MSKCC	GRCh37	9	133730361	133730361	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	362	320	0	ENST00000318560.5:c.427A>T	p.Ser143Cys	p.S143C	ENST00000318560	NM_005157.4	143	Agc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42058454	42058454	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	179	336	0	ENST00000219905.7:c.8174C>G	p.Ser2725Cys	p.S2725C	ENST00000219905	NM_001164273.1	2725	tCt/tGt																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140165	50140165	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0067658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	51	378	0	ENST00000246792.3:c.260A>T	p.Gln87Leu	p.Q87L	ENST00000246792	NM_006270.3	87	cAg/cTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044892	47044892	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0067658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	49	398	0	ENST00000329236.7:c.1984G>T	p.Glu662Ter	p.E662*	ENST00000329236	NM_001204466.1	662	Gag/Tag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211862	36211862	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	61	361	1	ENST00000222270.7:c.1613G>T	p.Arg538Leu	p.R538L	ENST00000222270	NM_014727.1	538	cGt/cTt																																																																															
HGF	3082	MSKCC	GRCh37	7	81335723	81335723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	44	314	0	ENST00000222390.5:c.1637C>A	p.Ala546Asp	p.A546D	ENST00000222390	NM_000601.4	546	gCt/gAt																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156718	20156719	+	missense_variant	Missense_Mutation	DNP	GC	GC	CG			P-0067658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	40	281	0	ENST00000379607.5:c.38_39delinsCG	p.Arg13Pro	p.R13P	ENST00000379607	NM_001412.3	13	cGC/cCG																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411913	63411914	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0067658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	51	474	1	ENST00000330258.3:c.1253_1254delinsTT	p.Arg418Leu	p.R418L	ENST00000330258	NM_152424.3	418	cGG/cTT																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0067691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	154	376	0	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
CBFB	865	MSKCC	GRCh37	16	67070577	67070577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	195	417	0	ENST00000412916.2:c.201G>T	p.Gln67His	p.Q67H	ENST00000412916		67	caG/caT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0067691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	109	333	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0067710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	30	214	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782177		P-0067710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	108	469	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3860665	3860665	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	48	376	0	ENST00000262367.5:c.914A>C	p.Asn305Thr	p.N305T	ENST00000262367	NM_004380.2	305	aAc/aCc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	475264	475264	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	53	334	0	ENST00000399788.2:c.373G>T	p.Ala125Ser	p.A125S	ENST00000399788	NM_001042603.1	125	Gcc/Tcc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212252718	212252718	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0067710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	53	312	0	ENST00000342788.4:c.3136-1G>T		p.X1046_splice	ENST00000342788	NM_005235.2	1046																																																																																
REST	5978	MSKCC	GRCh37	4	57796343	57796346	+	frameshift_variant	Frame_Shift_Del	DEL	ATAT	ATAT	TTA			P-0067710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	80	467	0	ENST00000309042.7:c.1319_1322delinsTTA	p.Asn440IlefsTer9	p.N440Ifs*9	ENST00000309042	NM_005612.4	440	aATATt/aTTAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29667633	29667633	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	52	278	0	ENST00000358273.4:c.7034del	p.Leu2345Ter	p.L2345*	ENST00000358273	NM_001042492.2	2344	acT/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs863223300		P-0067728-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	140	612	0	ENST00000269305.4:c.532del	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0067728-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	94	304	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
RET	5979	MSKCC	GRCh37	10	43612120	43612120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773256580		P-0067728-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	100	609	0	ENST00000355710.3:c.2225C>T	p.Thr742Met	p.T742M	ENST00000355710	NM_020975.4	742	aCg/aTg																																																																															
SYK	6850	MSKCC	GRCh37	9	93657853	93657853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067728-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	50	461	3	ENST00000375746.1:c.1879C>T	p.Arg627Cys	p.R627C	ENST00000375746	NM_001174167.1	627	Cgc/Tgc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900995	114900995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067728-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	92	558	0	ENST00000543371.1:c.605C>T	p.Pro202Leu	p.P202L	ENST00000543371	NM_001198531.1	202	cCt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs770248150		P-0067728-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	46	354	0	ENST00000256078.4:c.351A>C	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaC																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992725	68992725	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067728-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	19	466	0	ENST00000288368.4:c.1690T>C	p.Phe564Leu	p.F564L	ENST00000288368	NM_024870.2	564	Ttt/Ctt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0067729-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	74	320	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46268555	46268556	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0067729-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	43	421	0	ENST00000371998.3:c.2943dup	p.Leu982AlafsTer7	p.L982Afs*7	ENST00000371998		981	atg/atGg																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538909	23538909	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs373263457		P-0067735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	113	327	0	ENST00000380871.4:c.530A>G	p.Tyr177Cys	p.Y177C	ENST00000380871	NM_006167.3	177	tAt/tGt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948466	71948468	+	missense_variant	Missense_Mutation	ONP	GAC	GAC	TAT			P-0067735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	20	349	0	ENST00000298229.2:c.3178_3180delinsTAT	p.Asp1060Tyr	p.D1060Y	ENST00000298229	NM_001567.3	1060	GAC/TAT																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857020	9857020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025283-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			176	7	0	0	ENST00000330684.3:c.4381G>A	p.Glu1461Lys	p.E1461K	ENST00000330684	NM_001134407.1	1461	Gaa/Aaa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610473	81610473	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025283-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			222	10	0	0	ENST00000298171.2:c.2071A>G	p.Ile691Val	p.I691V	ENST00000298171	NM_000369.2	691	Atc/Gtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0025283-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			270	17	276	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86681186	86681186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064716-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			104	13	322	0	ENST00000274376.6:c.2827C>T	p.Leu943Phe	p.L943F	ENST00000274376	NM_002890.2	943	Ctt/Ttt																																																																															
MGA	23269	MSKCC	GRCh37	15	42042185	42042186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0064716-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			109	16	541	0	ENST00000219905.7:c.6381_6382dup	p.Ser2128LysfsTer52	p.S2128Kfs*52	ENST00000219905	NM_001164273.1	2127	tca/tcAAa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957037	1957037	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064716-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			161	26	477	0	ENST00000382895.3:c.2488A>T	p.Asn830Tyr	p.N830Y	ENST00000382895	NM_133330.2	830	Aac/Tac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0065854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			299	25	385	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-	rs397517086		P-0065854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			238	1046	435	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat																																																																															
VHL	7428	MSKCC	GRCh37	3	10183770	10183770	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			64	213	463	0	ENST00000256474.2:c.239G>C	p.Ser80Thr	p.S80T	ENST00000256474	NM_000551.3	80	aGt/aCt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468387	89468387	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			56	139	295	0	ENST00000336596.2:c.1921A>G	p.Lys641Glu	p.K641E	ENST00000336596	NM_005233.5	641	Aaa/Gaa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65304251	65304251	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			53	140	388	0	ENST00000342505.4:c.2864T>C	p.Ile955Thr	p.I955T	ENST00000342505	NM_002227.2	955	aTc/aCc																																																																															
LATS1	9113	MSKCC	GRCh37	6	149982932	149982932	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			149	143	366	1	ENST00000253339.5:c.3326A>G	p.Gln1109Arg	p.Q1109R	ENST00000253339		1109	cAg/cGg																																																																															
PIM1	5292	MSKCC	GRCh37	6	37140911	37140911	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065854-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			259	235	465	0	ENST00000373509.5:c.747C>G	p.Ile249Met	p.I249M	ENST00000373509	NM_002648.3	249	atC/atG																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0066335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	134	366	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	247	493	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12647734	12647734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	73	399	0	ENST00000251849.4:c.646C>T	p.Arg216Cys	p.R216C	ENST00000251849	NM_002880.3	216	Cgt/Tgt																																																																															
MSI1	4440	MSKCC	GRCh37	12	120789192	120789192	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	79	360	0	ENST00000257552.2:c.745G>C	p.Glu249Gln	p.E249Q	ENST00000257552	NM_002442.3	249	Gag/Cag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157505476	157505476	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	96	422	0	ENST00000346085.5:c.3457G>C	p.Glu1153Gln	p.E1153Q	ENST00000346085	NM_020732.3	1153	Gag/Cag																																																																															
HRAS	3265	MSKCC	GRCh37	11	534288	534288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894230		P-0066335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	211	449	0	ENST00000311189.7:c.35G>A	p.Gly12Asp	p.G12D	ENST00000311189		12	gGc/gAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37882077	37882077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	100	357	0	ENST00000269571.5:c.2843C>A	p.Thr948Asn	p.T948N	ENST00000269571		948	aCc/aAc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67197010	67197010	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs374406780		P-0066335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	179	421	0	ENST00000312629.5:c.253C>T	p.Arg85Ter	p.R85*	ENST00000312629	NM_003952.2	85	Cga/Tga																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38189097	38189097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	72	384	0	ENST00000317025.8:c.917G>C	p.Arg306Pro	p.R306P	ENST00000317025	NM_023034.1	306	cGa/cCa																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21350131	21350131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	234	509	0	ENST00000215739.8:c.2039C>T	p.Ala680Val	p.A680V	ENST00000215739	NM_006767.3	680	gCc/gTc																																																																															
RB1	5925	MSKCC	GRCh37	13	48955516	48955533	+	inframe_deletion	In_Frame_Del	DEL	AGAAATGATAAAACATTT	AGAAATGATAAAACATTT	-			P-0066335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	147	328	0	ENST00000267163.4:c.1636_1653del	p.Met546_Glu551del	p.M546_E551del	ENST00000267163	NM_000321.2	544	agAGAAATGATAAAACATTTa/aga																																																																															
ALK	238	MSKCC	GRCh37	2	29456508	29456508	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	105	530	0	ENST00000389048.3:c.2410G>C	p.Glu804Gln	p.E804Q	ENST00000389048	NM_004304.4	804	Gaa/Caa																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206650144	206650144	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	112	530	0	ENST00000367120.3:c.664A>T	p.Ile222Phe	p.I222F	ENST00000367120	NM_014002.3	222	Atc/Ttc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59885887	59885887	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	96	474	0	ENST00000259008.2:c.859G>C	p.Glu287Gln	p.E287Q	ENST00000259008	NM_032043.2	287	Gag/Cag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878577	151878577	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0066335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	128	508	0	ENST00000262189.6:c.6368C>G	p.Ser2123Ter	p.S2123*	ENST00000262189	NM_170606.2	2123	tCa/tGa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845395	156845395	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0066335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			805	128	747	0	ENST00000524377.1:c.1438G>T	p.Glu480Ter	p.E480*	ENST00000524377	NM_002529.3	480	Gag/Tag																																																																															
TET1	80312	MSKCC	GRCh37	10	70405581	70405581	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	100	461	0	ENST00000373644.4:c.3095C>G	p.Ser1032Cys	p.S1032C	ENST00000373644	NM_030625.2	1032	tCc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0067011-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			304	159	588	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
BCL6	604	MSKCC	GRCh37	3	187451339	187451339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200263685		P-0067011-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	92	416	0	ENST00000232014.4:c.143C>T	p.Thr48Met	p.T48M	ENST00000232014	NM_001130845.1	48	aCg/aTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3656567	3656567	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762475814		P-0067011-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			416	83	507	0	ENST00000294008.3:c.668G>A	p.Arg223His	p.R223H	ENST00000294008	NM_032444.2	223	cGt/cAt																																																																															
EZH2	2146	MSKCC	GRCh37	7	148512600	148512600	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0067011-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			247	8	333	2	ENST00000320356.2:c.1544A>G	p.Lys515Arg	p.K515R	ENST00000320356	NM_004456.4	515	aAg/aGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0067011-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			141	41	311	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175022	112175022	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067011-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			129	56	420	0	ENST00000257430.4:c.3734del	p.Lys1245ArgfsTer20	p.K1245Rfs*20	ENST00000257430	NM_000038.5	1244	cAa/ca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5216748	5216748	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753417682		P-0067011-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			271	64	427	0	ENST00000357368.4:c.4079C>T	p.Pro1360Leu	p.P1360L	ENST00000357368	NM_002850.3	1360	cCg/cTg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806569	1806569	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182935140		P-0067087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			370	46	463	0	ENST00000260795.2:c.1285G>A	p.Ala429Thr	p.A429T	ENST00000260795		429	Gcg/Acg																																																																															
NF1	4763	MSKCC	GRCh37	17	29562981	29562981	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs376576925		P-0067087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			282	80	384	0	ENST00000358273.4:c.3916C>T	p.Arg1306Ter	p.R1306*	ENST00000358273	NM_001042492.2	1306	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023246	27023261	+	frameshift_variant	Frame_Shift_Del	DEL	ACGGAGCCGCCCGGCG	ACGGAGCCGCCCGGCG	-			P-0067087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			261	35	303	0	ENST00000324856.7:c.352_367del	p.Thr118AlafsTer109	p.T118Afs*109	ENST00000324856	NM_006015.4	118	ACGGAGCCGCCCGGCGgc/gc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67197010	67197010	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs374406780		P-0067087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	138	348	0	ENST00000312629.5:c.253C>T	p.Arg85Ter	p.R85*	ENST00000312629	NM_003952.2	85	Cga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111463	8111506	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGCGAACTGTCAGACCACCACAACCACACTCTGGAGGAGGAA	TGTGCGAACTGTCAGACCACCACAACCACACTCTGGAGGAGGAA	-			P-0067087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			335	101	344	0	ENST00000346208.3:c.951_994del	p.Ala318GlnfsTer19	p.A318Qfs*19	ENST00000346208		317	TGTGCGAACTGTCAGACCACCACAACCACACTCTGGAGGAGGAAt/t																																																																															
AKT3	10000	MSKCC	GRCh37	1	243727098	243727098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			320	80	354	0	ENST00000263826.5:c.872G>A	p.Gly291Glu	p.G291E	ENST00000263826	NM_005465.4	291	gGa/gAa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696448	47696448	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	68	500	0	ENST00000347630.2:c.375T>G	p.Phe125Leu	p.F125L	ENST00000347630	NM_001007230.1	125	ttT/ttG																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185165717	185165717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	78	461	0	ENST00000265026.3:c.992C>T	p.Ser331Phe	p.S331F	ENST00000265026	NM_004721.4	331	tCt/tTt																																																																															
PPARG	5468	MSKCC	GRCh37	3	12422986	12422986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	52	460	0	ENST00000287820.6:c.476G>A	p.Cys159Tyr	p.C159Y	ENST00000287820	NM_015869.4	159	tGc/tAc																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114607	73114607	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	37	408	0	ENST00000356692.5:c.988G>C	p.Asp330His	p.D330H	ENST00000356692		330	Gat/Cat																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117959	70117959	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0067451-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	16	522	0	ENST00000245479.2:c.427T>A	p.Trp143Arg	p.W143R	ENST00000245479	NM_000346.3	143	Tgg/Agg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519972		P-0067462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	101	495	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	125	586	0	ENST00000250448.2:c.798C>G	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttG																																																																															
STAT3	6774	MSKCC	GRCh37	17	40491388	40491388	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	25	484	0	ENST00000264657.5:c.412A>G	p.Thr138Ala	p.T138A	ENST00000264657	NM_139276.2	138	Acg/Gcg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0067491-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	84	490	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0067491-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	102	379	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118751	115118752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067491-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	154	534	0	ENST00000257566.3:c.589dup	p.Trp197LeufsTer30	p.W197Lfs*30	ENST00000257566	NM_016569.3	197	tgg/tTgg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216340	2216340	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067491-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	27	524	0	ENST00000398665.3:c.1984T>C	p.Cys662Arg	p.C662R	ENST00000398665	NM_032482.2	662	Tgt/Cgt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0067500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	47	315	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0067500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	107	366	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581335	48581335	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	33	419	0	ENST00000342988.3:c.639del	p.Asn216ThrfsTer25	p.N216Tfs*25	ENST00000342988	NM_005359.5	213	aaC/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0067600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	55	297	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0067600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	116	500	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575087	48575087	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	84	359	0	ENST00000342988.3:c.281T>G	p.Ile94Ser	p.I94S	ENST00000342988	NM_005359.5	94	aTc/aGc																																																																															
MGA	23269	MSKCC	GRCh37	15	41988452	41988455	+	frameshift_variant	Frame_Shift_Del	DEL	CAAA	CAAA	-			P-0067601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	44	474	0	ENST00000219905.7:c.1246_1249del	p.Asn416ValfsTer7	p.N416Vfs*7	ENST00000219905	NM_001164273.1	415	tCAAAc/tc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288893	33288893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			37	193	452	0	ENST00000374542.5:c.659C>T	p.Ser220Phe	p.S220F	ENST00000374542	NM_001141970.1	220	tCc/tTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692997	89693016	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAGACAAAAAGGTAAGTTA	AGAGACAAAAAGGTAAGTTA	-			P-0067601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			15	65	381	0	ENST00000371953.3:c.481_492+8del		p.X161_splice	ENST00000371953	NM_000314.4	161																																																																																
EGFR	1956	MSKCC	GRCh37	7	55270209	55270209	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0067601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	167	598	0	ENST00000275493.2:c.3163-1G>T		p.X1055_splice	ENST00000275493	NM_005228.3	1055																																																																																
MEN1	4221	MSKCC	GRCh37	11	64572583	64572583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	136	735	0	ENST00000337652.1:c.1288G>A	p.Glu430Lys	p.E430K	ENST00000337652	NM_130803.2	430	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0067604-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	145	485	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010560	48010560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067604-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	111	490	0	ENST00000234420.5:c.188C>T	p.Ser63Phe	p.S63F	ENST00000234420	NM_000179.2	63	tCc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0067604-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	78	299	0	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86667940	86667940	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	71	456	0	ENST00000274376.6:c.1704G>A	p.Trp568Ter	p.W568*	ENST00000274376	NM_002890.2	568	tgG/tgA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061220	38061225	+	inframe_deletion	In_Frame_Del	DEL	CGTTCT	CGTTCT	-			P-0067627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	155	560	0	ENST00000250448.2:c.764_769del	p.Glu255_Asn256del	p.E255_N256del	ENST00000250448	NM_004496.3	255	gAGAACGgc/ggc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61729144	61729144	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067627-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	55	314	1	ENST00000401558.2:c.395T>A	p.Met132Lys	p.M132K	ENST00000401558	NM_003400.3	132	aTg/aAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0040999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	124	522	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0040999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	102	575	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0059805-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1297	143	418	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7984475	7984475	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059805-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			417	40	428	0	ENST00000319144.4:c.383T>C	p.Val128Ala	p.V128A	ENST00000319144	NM_001139.2	128	gTc/gCc																																																																															
KDR	3791	MSKCC	GRCh37	4	55972913	55972913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059805-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			385	58	378	0	ENST00000263923.4:c.1477G>A	p.Gly493Arg	p.G493R	ENST00000263923	NM_002253.2	493	Gga/Aga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727513	88727513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374069724		P-0059805-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			362	20	481	0	ENST00000360948.2:c.266G>A	p.Arg89His	p.R89H	ENST00000360948	NM_001012338.2	89	cGc/cAc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332807	70332807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059805-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	44	449	1	ENST00000373644.4:c.712G>T	p.Gly238Cys	p.G238C	ENST00000373644	NM_030625.2	238	Ggt/Tgt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420305	88420305	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059805-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			438	44	448	0	ENST00000360948.2:c.2381T>C	p.Val794Ala	p.V794A	ENST00000360948	NM_001012338.2	794	gTc/gCc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923453	9923453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059805-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			430	54	488	0	ENST00000330684.3:c.1834G>A	p.Val612Met	p.V612M	ENST00000330684	NM_001134407.1	612	Gtg/Atg																																																																															
NF1	4763	MSKCC	GRCh37	17	29663748	29663795	+	inframe_deletion	In_Frame_Del	DEL	AGCACGCTACATGCTGATGCTGTCCTTCAACAATTCCCTTGATGTGGC	AGCACGCTACATGCTGATGCTGTCCTTCAACAATTCCCTTGATGTGGC	-			P-0059805-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			439	61	451	0	ENST00000358273.4:c.6246_6293del	p.Arg2083_Ala2098del	p.R2083_A2098del	ENST00000358273	NM_001042492.2	2081	ttAGCACGCTACATGCTGATGCTGTCCTTCAACAATTCCCTTGATGTGGCa/tta																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812269	212812269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201152419		P-0060672-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			104	25	298	0	ENST00000342788.4:c.307C>T	p.Arg103Cys	p.R103C	ENST00000342788	NM_005235.2	103	Cgc/Tgc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0060672-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			74	82	249	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs483352697		P-0060672-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			97	122	349	0	ENST00000269305.4:c.587G>A	p.Arg196Gln	p.R196Q	ENST00000269305	NM_001126112.2	196	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112173854	112173854	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0060672-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			137	25	338	0	ENST00000257430.4:c.2563G>T	p.Glu855Ter	p.E855*	ENST00000257430	NM_000038.5	855	Gaa/Taa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876314	35876314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060672-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			178	34	269	0	ENST00000303115.3:c.1106G>A	p.Cys369Tyr	p.C369Y	ENST00000303115	NM_002185.3	369	tGc/tAc																																																																															
ATM	472	MSKCC	GRCh37	11	108216624	108216626	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs1340074139		P-0061332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	21	292	0	ENST00000278616.4:c.8578_8580del	p.Ser2860del	p.S2860del	ENST00000278616	NM_000051.3	2858	aCTTct/act																																																																															
ATM	472	MSKCC	GRCh37	11	108123543	108123543	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0061332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	18	236	0	ENST00000278616.4:c.1803-1G>T		p.X601_splice	ENST00000278616	NM_000051.3	601																																																																																
PTEN	5728	MSKCC	GRCh37	10	89624257	89624258	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0061332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			18	18	120	0	ENST00000371953.3:c.32_33del	p.Arg11LysfsTer32	p.R11Kfs*32	ENST00000371953	NM_000314.4	11	AGa/a																																																																															
RIT1	6016	MSKCC	GRCh37	1	155870180	155870180	+	stop_lost	Nonstop_Mutation	SNP	C	C	A			P-0061332-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	23	279	0	ENST00000368323.3:c.659G>T	p.Ter220LeuextTer24	p.*220Lext*24	ENST00000368323	NM_006912.5	220	tGa/tTa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266086	41266097	+	inframe_deletion	In_Frame_Del	DEL	AGTCTTACCTGG	AGTCTTACCTGG	-			P-0062948-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			425	20	405	0	ENST00000349496.5:c.84_95del	p.Gln28_Asp32delinsHis	p.Q28_D32delinsH	ENST00000349496	NM_001904.3	28	cAGTCTTACCTGGac/cac																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0065609-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			506	23	439	2	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0065609-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			409	25	320	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0066864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	207	399	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031402	11031402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	206	503	0	ENST00000327064.4:c.1402G>C	p.Asp468His	p.D468H	ENST00000327064	NM_199141.1	468	Gat/Cat																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670944	30670954	+	frameshift_variant	Frame_Shift_Del	DEL	TGTCCGGCGGA	TGTCCGGCGGA	-			P-0066864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	95	436	0	ENST00000376406.3:c.5792_5802del	p.Ile1931SerfsTer33	p.I1931Sfs*33	ENST00000376406	NM_014641.2	1931	aTCCGCCGGACA/a																																																																															
TAP1	6890	MSKCC	GRCh37	6	32820993	32820993	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	48	427	0	ENST00000354258.4:c.601G>C	p.Val201Leu	p.V201L	ENST00000354258	NM_000593.5	201	Gtt/Ctt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0067361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	219	370	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175324	112175324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1211642532		P-0067361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	197	272	0	ENST00000257430.4:c.4033G>T	p.Glu1345Ter	p.E1345*	ENST00000257430	NM_000038.5	1345	Gaa/Taa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857047	9857047	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs568622613		P-0067361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	29	285	0	ENST00000330684.3:c.4354C>T	p.Arg1452Cys	p.R1452C	ENST00000330684	NM_001134407.1	1452	Cgc/Tgc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285754	87285754	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370304899		P-0067361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	38	356	1	ENST00000277120.3:c.91G>A	p.Ala31Thr	p.A31T	ENST00000277120		31	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913528		P-0067361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	117	264	1	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150923507	150923507	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs376939142		P-0067361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	182	310	0	ENST00000271640.5:c.2154C>A	p.Phe718Leu	p.F718L	ENST00000271640	NM_001145415.1	718	ttC/ttA																																																																															
NSD1	64324	MSKCC	GRCh37	5	176722351	176722351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	84	344	0	ENST00000439151.2:c.7982C>T	p.Thr2661Ile	p.T2661I	ENST00000439151	NM_022455.4	2661	aCt/aTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0067362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	27	232	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458348	12458350	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0067362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	42	286	0	ENST00000287820.6:c.967_969del	p.Glu323del	p.E323del	ENST00000287820	NM_015869.4	322	cAGGag/cag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296182	15296182	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519101		P-0067371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	49	472	0	ENST00000263388.2:c.2182C>T	p.Arg728Cys	p.R728C	ENST00000263388	NM_000435.2	728	Cgc/Tgc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934133	39934133	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			47	293	171	0	ENST00000378444.4:c.466C>T	p.Gln156Ter	p.Q156*	ENST00000378444	NM_001123385.1	156	Caa/Taa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375028	45375028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	239	338	0	ENST00000262160.6:c.815C>T	p.Ala272Val	p.A272V	ENST00000262160	NM_005901.5	272	gCa/gTa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99473477	99473477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	110	303	0	ENST00000268035.6:c.2899C>G	p.Leu967Val	p.L967V	ENST00000268035	NM_000875.3	967	Ctg/Gtg																																																																															
ATRX	546	MSKCC	GRCh37	X	76813097	76813097	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			20	219	170	0	ENST00000373344.5:c.6524T>A	p.Ile2175Asn	p.I2175N	ENST00000373344	NM_000489.3	2175	aTt/aAt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572257	64572259	+	frameshift_variant	Frame_Shift_Del	DEL	TCT	TCT	C			P-0067371-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			72	280	500	0	ENST00000337652.1:c.1395_1397delinsG	p.Glu466GlyfsTer69	p.E466Gfs*69	ENST00000337652	NM_130803.2	465	cgAGAg/cgGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0067374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	352	256	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061516	38061517	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGC	rs763371315		P-0067374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	18	300	0	ENST00000250448.2:c.470_472dup	p.Gly157dup	p.G157dup	ENST00000250448	NM_004496.3	157	gac/gGCGac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969331	44969331	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	141	129	0	ENST00000377967.4:c.4013T>G	p.Val1338Gly	p.V1338G	ENST00000377967	NM_021140.2	1338	gTt/gGt																																																																															
TEK	7010	MSKCC	GRCh37	9	27180306	27180306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	30	362	0	ENST00000380036.4:c.970G>T	p.Asp324Tyr	p.D324Y	ENST00000380036	NM_000459.3	324	Gat/Tat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830587	72830588	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	119	359	0	ENST00000268489.5:c.5993dup	p.Leu1998PhefsTer31	p.L1998Ffs*31	ENST00000268489	NM_006885.3	1998	tta/ttTa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5066703	5066703	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	88	281	0	ENST00000381652.3:c.1240A>G	p.Lys414Glu	p.K414E	ENST00000381652	NM_004972.3	414	Aag/Gag																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300922	137300922	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0067374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	123	310	0	ENST00000481739.1:c.567C>G	p.Tyr189Ter	p.Y189*	ENST00000481739	NM_002957.4	189	taC/taG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519985		P-0067376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	68	421	0	ENST00000269305.4:c.857A>G	p.Glu286Gly	p.E286G	ENST00000269305	NM_001126112.2	286	gAa/gGa																																																																															
NF1	4763	MSKCC	GRCh37	17	29667582	29667589	+	frameshift_variant	Frame_Shift_Del	DEL	GGTCAACT	GGTCAACT	-			P-0067376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	99	331	0	ENST00000358273.4:c.6981_6988del	p.Glu2327AspfsTer10	p.E2327Dfs*10	ENST00000358273	NM_001042492.2	2327	gaGGTCAACTtg/gatg																																																																															
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0067379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	59	254	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0067379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	118	473	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
ATM	472	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781894		P-0067379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	124	448	0	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt																																																																															
EZH2	2146	MSKCC	GRCh37	7	148511172	148511172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	89	358	0	ENST00000320356.2:c.1730C>T	p.Pro577Leu	p.P577L	ENST00000320356	NM_004456.4	577	cCg/cTg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288569	33288569	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1266548613		P-0067379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	54	376	0	ENST00000374542.5:c.983G>A	p.Arg328His	p.R328H	ENST00000374542	NM_001141970.1	328	cGt/cAt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046339	180046339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	43	338	0	ENST00000261937.6:c.2675C>T	p.Ala892Val	p.A892V	ENST00000261937	NM_182925.4	892	gCg/gTg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47425499	47425500	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0067379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	137	423	0	ENST00000404338.3:c.3569_3570del	p.Glu1190GlyfsTer9	p.E1190Gfs*9	ENST00000404338	NM_004491.4	1189	aaAGag/aaag																																																																															
STK40	83931	MSKCC	GRCh37	1	36807538	36807539	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	31	407	0	ENST00000373129.3:c.1125dup	p.Glu376Ter	p.E376*	ENST00000373129	NM_032017.1	375	-/T																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240285	41240285	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	9	272	0	ENST00000379561.5:c.65C>G	p.Ser22Trp	p.S22W	ENST00000379561	NM_002015.3	22	tCg/tGg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162722920	162722920	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	87	375	0	ENST00000367921.3:c.118C>T	p.Gln40Ter	p.Q40*	ENST00000367921	NM_006182.2	40	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023710	27023756	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCATGGGGGGAGGCGGCCCCTCCGCGGCCGGCGGGGGAACTCCCC	GGCCATGGGGGGAGGCGGCCCCTCCGCGGCCGGCGGGGGAACTCCCC	-			P-0067380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	79	332	0	ENST00000324856.7:c.816_862del	p.Met274HisfsTer110	p.M274Hfs*110	ENST00000324856	NM_006015.4	272	ggGGCCATGGGGGGAGGCGGCCCCTCCGCGGCCGGCGGGGGAACTCCCCag/ggag																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940297	49940297	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	115	421	0	ENST00000296474.3:c.746A>G	p.Tyr249Cys	p.Y249C	ENST00000296474	NM_002447.2	249	tAc/tGc																																																																															
ARAF	369	MSKCC	GRCh37	X	47430327	47430327	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	81	364	0	ENST00000377045.4:c.1602C>G	p.Ile534Met	p.I534M	ENST00000377045	NM_001654.4	534	atC/atG																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539105	187539105	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	116	378	0	ENST00000441802.2:c.8635A>C	p.Lys2879Gln	p.K2879Q	ENST00000441802	NM_005245.3	2879	Aag/Cag																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647067	23647067	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	94	423	0	ENST00000261584.4:c.800del	p.Pro267LeufsTer12	p.P267Lfs*12	ENST00000261584	NM_024675.3	267	cCt/ct																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519912		P-0067382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			23	212	214	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912165	29912165	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	10	166	0	ENST00000376809.5:c.886C>A	p.Leu296Met	p.L296M	ENST00000376809	NM_002116.7	296	Ctg/Atg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942030	44942031	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0067382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			30	97	185	0	ENST00000377967.4:c.3283_3284del	p.Lys1095ValfsTer7	p.K1095Vfs*7	ENST00000377967	NM_021140.2	1094	AAa/a																																																																															
CYLD	1540	MSKCC	GRCh37	16	50820837	50820837	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	75	329	0	ENST00000398568.2:c.2012G>T	p.Gly671Val	p.G671V	ENST00000398568	NM_001042412.1	671	gGa/gTa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146498	185146498	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	73	437	0	ENST00000265026.3:c.129del	p.Glu44ArgfsTer13	p.E44Rfs*13	ENST00000265026	NM_004721.4	43	ctC/ct																																																																															
CDH1	999	MSKCC	GRCh37	16	68835596	68835596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587783047		P-0067383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	63	393	0	ENST00000261769.5:c.187C>T	p.Arg63Ter	p.R63*	ENST00000261769	NM_004360.3	63	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1131691035		P-0067383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	122	517	0	ENST00000269305.4:c.592del	p.Glu198LysfsTer49	p.E198Kfs*49	ENST00000269305	NM_001126112.2	198	Gaa/aa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458372	120458372	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	115	500	0	ENST00000256646.2:c.6973C>T	p.Gln2325Ter	p.Q2325*	ENST00000256646	NM_024408.3	2325	Cag/Tag																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222674	6222697	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TGCTGCTCTCCTTGTTGGCGTCCT	TGCTGCTCTCCTTGTTGGCGTCCT	A			P-0067383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	96	434	0	ENST00000252674.7:c.547-2_568delinsT		p.X183_splice	ENST00000252674	NM_005934.3	183																																																																																
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057520007		P-0067387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	23	440	2	ENST00000269305.4:c.614A>T	p.Tyr205Phe	p.Y205F	ENST00000269305	NM_001126112.2	205	tAt/tTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971023	21971024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0067387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	20	327	0	ENST00000304494.5:c.334dup	p.Arg112ProfsTer8	p.R112Pfs*8	ENST00000304494	NM_000077.4	112	cgt/cCgt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413060	63413060	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769613326		P-0067387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	16	413	1	ENST00000330258.3:c.107C>T	p.Ala36Val	p.A36V	ENST00000330258	NM_152424.3	36	gCg/gTg																																																																															
RAD52	5893	MSKCC	GRCh37	12	1039230	1039231	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			P-0067390-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	82	296	0	ENST00000358495.3:c.266_267insTGC	p.Thr89_Gln90insAla	p.T89_Q90insA	ENST00000358495	NM_134424.2	89	acg/acTGCg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100070	27100070	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0067390-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	47	426	0	ENST00000324856.7:c.3867-1G>C		p.X1289_splice	ENST00000324856	NM_006015.4	1289																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0067400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	88	436	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100183	27100183	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1421112233		P-0067400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	77	485	0	ENST00000324856.7:c.3979C>T	p.Gln1327Ter	p.Q1327*	ENST00000324856	NM_006015.4	1327	Cag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21968234	21968234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	93	367	0	ENST00000304494.5:c.465del	p.Asp156IlefsTer37	p.D156Ifs*37	ENST00000304494	NM_000077.4	155	ccC/cc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600447	10600447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	119	485	0	ENST00000171111.5:c.1408C>A	p.Arg470Ser	p.R470S	ENST00000171111	NM_203500.1	470	Cgt/Agt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874791	151874791	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0067400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	49	400	0	ENST00000262189.6:c.7747G>T	p.Glu2583Ter	p.E2583*	ENST00000262189	NM_170606.2	2583	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434925	49434925	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1324674144		P-0067400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	92	394	0	ENST00000301067.7:c.6628C>T	p.Pro2210Ser	p.P2210S	ENST00000301067	NM_003482.3	2210	Ccg/Tcg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243809248	243809248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	92	417	0	ENST00000263826.5:c.376G>A	p.Asp126Asn	p.D126N	ENST00000263826	NM_005465.4	126	Gat/Aat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181758	56181758	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0067400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	59	273	0	ENST00000399503.3:c.3983-1G>T		p.X1328_splice	ENST00000399503	NM_005921.1	1328																																																																																
HGF	3082	MSKCC	GRCh37	7	81381472	81381472	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	44	335	0	ENST00000222390.5:c.589C>A	p.Arg197Ser	p.R197S	ENST00000222390	NM_000601.4	197	Cgc/Agc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446847	29446847	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	20	369	0	ENST00000544604.2:c.2678C>A	p.Pro893His	p.P893H	ENST00000544604	NM_001206998.1	893	cCt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573554	48573554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	70	420	0	ENST00000342988.3:c.138G>T	p.Lys46Asn	p.K46N	ENST00000342988	NM_005359.5	46	aaG/aaT																																																																															
YAP1	10413	MSKCC	GRCh37	11	102056758	102056758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	55	256	0	ENST00000282441.5:c.698C>A	p.Pro233His	p.P233H	ENST00000282441	NM_001130145.2	233	cCt/cAt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966723	25966723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	110	467	0	ENST00000435504.4:c.2483G>T	p.Arg828Ile	p.R828I	ENST00000435504		828	aGa/aTa																																																																															
GAB2	9846	MSKCC	GRCh37	11	77932738	77932738	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	45	395	0	ENST00000361507.4:c.1746G>T	p.Glu582Asp	p.E582D	ENST00000361507	NM_080491.2	582	gaG/gaT																																																																															
NF1	4763	MSKCC	GRCh37	17	29653110	29653110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	51	462	0	ENST00000358273.4:c.5108G>T	p.Ser1703Ile	p.S1703I	ENST00000358273	NM_001042492.2	1703	aGc/aTc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503931	47503931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067400-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	26	338	0	ENST00000404338.3:c.4486G>A	p.Glu1496Lys	p.E1496K	ENST00000404338	NM_004491.4	1496	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0067406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	338	453	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112174502	112174502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876659539		P-0067406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	143	410	0	ENST00000257430.4:c.3211C>T	p.Gln1071Ter	p.Q1071*	ENST00000257430	NM_000038.5	1071	Caa/Taa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435486	18435486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	123	402	0	ENST00000266497.5:c.471G>T	p.Glu157Asp	p.E157D	ENST00000266497		157	gaG/gaT																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476364	88476364	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780933441		P-0067406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	104	358	0	ENST00000360948.2:c.1768G>A	p.Glu590Lys	p.E590K	ENST00000360948	NM_001012338.2	590	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175206	112175206	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	115	414	0	ENST00000257430.4:c.3915del	p.Glu1306LysfsTer2	p.E1306Kfs*2	ENST00000257430	NM_000038.5	1305	gcA/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0067406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	14	314	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911644	114911644	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0067406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	109	306	1	ENST00000543371.1:c.1161+1G>T		p.X387_splice	ENST00000543371	NM_001198531.1	387																																																																																
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0067407-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			107	33	372	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42040946	42040946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067407-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	37	474	0	ENST00000219905.7:c.5324G>T	p.Arg1775Ile	p.R1775I	ENST00000219905	NM_001164273.1	1775	aGa/aTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0067407-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	52	261	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112745407	112745407	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067407-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	52	274	0	ENST00000369452.4:c.725C>G	p.Thr242Arg	p.T242R	ENST00000369452	NM_007373.3	242	aCg/aGg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163428	47163441	+	frameshift_variant	Frame_Shift_Del	DEL	ATTTCAAGAGAGTT	ATTTCAAGAGAGTT	-			P-0067407-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	45	408	0	ENST00000409792.3:c.2685_2698del	p.Thr896ArgfsTer15	p.T896Rfs*15	ENST00000409792	NM_014159.6	895	ctAACTCTCTTGAAATgc/ctgc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197819	123197819	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067407-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	22	140	0	ENST00000218089.9:c.1943A>G	p.Asn648Ser	p.N648S	ENST00000218089	NM_001042749.1	648	aAc/aGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0067440-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	17	524	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221822	55221822	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs149840192		P-0067440-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			661	41	883	2	ENST00000275493.2:c.866C>A	p.Ala289Asp	p.A289D	ENST00000275493	NM_005228.3	289	gCc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0067477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	29	290	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057936	27057937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1415146710		P-0067477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	39	408	0	ENST00000324856.7:c.1650dup	p.Tyr551LeufsTer72	p.Y551Lfs*72	ENST00000324856	NM_006015.4	548	-/C																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670621	30670621	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0067477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	27	352	0	ENST00000376406.3:c.5899G>T	p.Glu1967Ter	p.E1967*	ENST00000376406	NM_014641.2	1967	Gaa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29562746	29562746	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs199474742		P-0067477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	43	315	0	ENST00000358273.4:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000358273	NM_001042492.2	1276	Cga/Tga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120497714	120497719	+	inframe_deletion	In_Frame_Del	DEL	TCGTTC	TCGTTC	-			P-0067477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	31	359	0	ENST00000256646.2:c.2163_2168del	p.Asn722_Glu723del	p.N722_E723del	ENST00000256646	NM_024408.3	721	gtGAACGAa/gta																																																																															
CDK8	1024	MSKCC	GRCh37	13	26975437	26975437	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	24	295	0	ENST00000381527.3:c.1063A>C	p.Lys355Gln	p.K355Q	ENST00000381527	NM_001260.1	355	Aaa/Caa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145740	11145740	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	19	357	0	ENST00000344626.4:c.4102G>T	p.Gly1368Cys	p.G1368C	ENST00000344626	NM_003072.3	1368	Ggc/Tgc																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61310400	61310400	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			91	15	81	0	ENST00000341074.5:c.217T>C	p.Tyr73His	p.Y73H	ENST00000341074	NM_002974.2	73	Tat/Cat																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619425	1619425	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	21	367	0	ENST00000344749.5:c.1216A>C	p.Ser406Arg	p.S406R	ENST00000344749	NM_001136139.2	406	Agc/Cgc																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652045	36652045	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	30	408	0	ENST00000244741.5:c.167A>T	p.Glu56Val	p.E56V	ENST00000244741	NM_000389.4	56	gAg/gTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76954106	76954106	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	16	86	0	ENST00000373344.5:c.145G>T	p.Gly49Cys	p.G49C	ENST00000373344	NM_000489.3	49	Ggt/Tgt																																																																															
AR	367	MSKCC	GRCh37	X	66863165	66863165	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	43	176	0	ENST00000374690.3:c.1684A>T	p.Ile562Phe	p.I562F	ENST00000374690	NM_000044.3	562	Atc/Ttc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974754	21974798	+	inframe_deletion	In_Frame_Del	DEL	CCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCT	CCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCT	-			P-0067477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	32	360	0	ENST00000304494.5:c.29_73del	p.Glu10_Arg24del	p.E10_R24del	ENST00000304494	NM_000077.4	10	gAGCCTTCGGCTGACTGGCTGGCCACGGCCGCGGCCCGGGGTCGGGta/gta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0067481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	189	331	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573563	48573564	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	105	270	0	ENST00000342988.3:c.153dup	p.Asp52ArgfsTer2	p.D52Rfs*2	ENST00000342988	NM_005359.5	49	-/A																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs377767347		P-0067481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	14	301	0	ENST00000342988.3:c.1082G>T	p.Arg361Leu	p.R361L	ENST00000342988	NM_005359.5	361	cGc/cTc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185184670	185184670	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188669013		P-0067481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	170	318	0	ENST00000265026.3:c.1562G>A	p.Arg521His	p.R521H	ENST00000265026	NM_004721.4	521	cGt/cAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9928076	9928076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	128	241	0	ENST00000330684.3:c.1663G>A	p.Ala555Thr	p.A555T	ENST00000330684	NM_001134407.1	555	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0067481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	93	218	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134251	11134251	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1218643327		P-0067481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	120	280	0	ENST00000344626.4:c.2917C>T	p.Arg973Trp	p.R973W	ENST00000344626	NM_003072.3	973	Cgg/Tgg																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250485	26250485	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	201	379	0	ENST00000446824.2:c.349C>T	p.Arg117Ter	p.R117*	ENST00000446824	NM_021018.2	117	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440739	56440739	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	338	325	0	ENST00000407977.2:c.479C>G	p.Pro160Arg	p.P160R	ENST00000407977		160	cCa/cGa																																																																															
LYN	4067	MSKCC	GRCh37	8	56859039	56859039	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	79	221	0	ENST00000519728.1:c.165G>C	p.Arg55Ser	p.R55S	ENST00000519728	NM_002350.3	55	agG/agC																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0067484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	87	296	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0067484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	215	346	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	88	391	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
CD276	80381	MSKCC	GRCh37	15	73994848	73994848	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs910584858		P-0067484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			59	10	62	0	ENST00000318443.5:c.332G>A	p.Arg111His	p.R111H	ENST00000318443	NM_001024736.1	111	cGc/cAc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216306	2216306	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	61	374	0	ENST00000398665.3:c.1950C>G	p.Ser650Arg	p.S650R	ENST00000398665	NM_032482.2	650	agC/agG																																																																															
CDH1	999	MSKCC	GRCh37	16	68853264	68853265	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	170	305	0	ENST00000261769.5:c.1648dup	p.Arg550LysfsTer5	p.R550Kfs*5	ENST00000261769	NM_004360.3	549	-/A																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109978	115110002	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTGTTCAGATTGAGGAAGGGGTG	TGGTGTTCAGATTGAGGAAGGGGTG	-			P-0067484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	77	365	0	ENST00000257566.3:c.1876_1900del	p.His626CysfsTer255	p.H626Cfs*255	ENST00000257566	NM_016569.3	626	CACCCCTTCCTCAATCTGAACACCAtg/tg																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858435	27858435	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	120	486	0	ENST00000359303.2:c.136A>G	p.Thr46Ala	p.T46A	ENST00000359303	NM_003535.2	46	Acc/Gcc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0067485-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	89	336	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539540	187539540	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067485-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	61	289	0	ENST00000441802.2:c.8200C>A	p.Leu2734Ile	p.L2734I	ENST00000441802	NM_005245.3	2734	Ctt/Att																																																																															
RASA1	5921	MSKCC	GRCh37	5	86665671	86665671	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067485-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	39	222	0	ENST00000274376.6:c.1652A>T	p.Glu551Val	p.E551V	ENST00000274376	NM_002890.2	551	gAa/gTa																																																																															
AKT2	208	MSKCC	GRCh37	19	40748452	40748452	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs575460456		P-0067486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			805	44	293	1	ENST00000392038.2:c.430C>T	p.Arg144Trp	p.R144W	ENST00000392038	NM_001626.4	144	Cgg/Tgg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267361	198267361	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs754688962		P-0067486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	239	369	0	ENST00000335508.6:c.1996A>G	p.Lys666Glu	p.K666E	ENST00000335508	NM_012433.2	666	Aag/Gag																																																																															
SMO	6608	MSKCC	GRCh37	7	128845222	128845222	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	426	327	0	ENST00000249373.3:c.717del	p.Val240SerfsTer62	p.V240Sfs*62	ENST00000249373	NM_005631.4	239	gCc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0066659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	25	288	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0066659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	24	264	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554292	63554293	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0066659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	29	375	0	ENST00000307078.5:c.446dup	p.Lys150GlufsTer18	p.K150Efs*18	ENST00000307078	NM_004655.3	149	ctg/ctTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0067418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	152	410	3	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250883	153250883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			72	151	290	1	ENST00000281708.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000281708	NM_033632.3	393	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173590	112173590	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	77	355	0	ENST00000257430.4:c.2299C>T	p.Gln767Ter	p.Q767*	ENST00000257430	NM_000038.5	767	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426729	49426730	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs576788910		P-0067418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	67	392	0	ENST00000301067.7:c.11756_11758dup	p.Gln3919dup	p.Q3919dup	ENST00000301067	NM_003482.3	3919	cta/cAGCta																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068971	30068971	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	27	331	0	ENST00000331968.5:c.1958A>G	p.Glu653Gly	p.E653G	ENST00000331968	NM_002742.2	653	gAa/gGa																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14380358	14380360	+	inframe_deletion	In_Frame_Del	DEL	ACC	ACC	-			P-0067418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	61	256	0	ENST00000256196.4:c.57_59del	p.Val20del	p.V20del	ENST00000256196		19	gtGGTc/gtc																																																																															
KLF5	688	MSKCC	GRCh37	13	73636548	73636548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	259	446	0	ENST00000377687.4:c.811C>T	p.Pro271Ser	p.P271S	ENST00000377687	NM_001730.3	271	Ccg/Tcg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845268	42845268	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	106	293	0	ENST00000398585.3:c.994G>T	p.Ala332Ser	p.A332S	ENST00000398585	NM_001135099.1	332	Gcc/Tcc																																																																															
APC	324	MSKCC	GRCh37	5	112175509	112175515	+	frameshift_variant	Frame_Shift_Del	DEL	GAGTGAA	GAGTGAA	AT			P-0067418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	79	368	0	ENST00000257430.4:c.4218_4224delinsAT	p.Glu1408MetfsTer13	p.E1408Mfs*13	ENST00000257430	NM_000038.5	1406	caGAGTGAA/caAT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0067422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	267	324	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15964865	15964865	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	107	397	0	ENST00000268712.3:c.5731C>A	p.Pro1911Thr	p.P1911T	ENST00000268712	NM_006311.3	1911	Cca/Aca																																																																															
YES1	7525	MSKCC	GRCh37	18	756701	756701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	91	420	0	ENST00000314574.4:c.127C>T	p.Pro43Ser	p.P43S	ENST00000314574	NM_005433.3	43	Ccg/Tcg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748439	162748439	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	83	437	0	ENST00000367921.3:c.2353C>G	p.Gln785Glu	p.Q785E	ENST00000367921	NM_006182.2	785	Caa/Gaa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918130	50918130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	71	342	0	ENST00000440232.2:c.2447C>T	p.Ser816Phe	p.S816F	ENST00000440232	NM_002691.3	816	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7573996	7573997	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCTCTCGGAACATCTCGAAGC			P-0067422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	125	323	0	ENST00000269305.4:c.1010_1030dup	p.Arg337_Glu343dup	p.R337_E343dup	ENST00000269305	NM_001126112.2	337	ctg/cGCTTCGAGATGTTCCGAGAGCtg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814707	139814707	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0067422-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	75	397	0	ENST00000247668.2:c.700G>T	p.Glu234Ter	p.E234*	ENST00000247668	NM_021138.3	234	Gag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0067423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	57	285	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0067423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	31	314	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	54	329	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117872	70117872	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	55	341	0	ENST00000245479.2:c.340G>C	p.Val114Leu	p.V114L	ENST00000245479	NM_000346.3	114	Gtg/Ctg																																																																															
APC	324	MSKCC	GRCh37	5	112176027	112176030	+	frameshift_variant	Frame_Shift_Del	DEL	TTAT	TTAT	-			P-0067423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			94	33	338	0	ENST00000257430.4:c.4738_4741del	p.Ile1580LeufsTer69	p.I1580Lfs*69	ENST00000257430	NM_000038.5	1579	aTTATt/at																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584725	48584725	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	49	330	0	ENST00000342988.3:c.803G>A	p.Trp268Ter	p.W268*	ENST00000342988	NM_005359.5	268	tGg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0067423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			45	50	236	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112173913	112173913	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	42	336	0	ENST00000257430.4:c.2624del	p.Lys875SerfsTer41	p.K875Sfs*41	ENST00000257430	NM_000038.5	874	tcA/tc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619180	37619180	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	143	476	0	ENST00000447079.4:c.856C>T	p.Gln286Ter	p.Q286*	ENST00000447079	NM_015083.1	286	Cag/Tag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37665979	37665979	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	78	315	0	ENST00000447079.4:c.2631T>G	p.Asp877Glu	p.D877E	ENST00000447079	NM_015083.1	877	gaT/gaG																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061112	38061201	+	inframe_deletion	In_Frame_Del	DEL	TCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCT	TCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCT	-			P-0067298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	82	418	0	ENST00000250448.2:c.788_877del	p.Gln263_Ser293delinsArg	p.Q263_S293delinsR	ENST00000250448	NM_004496.3	263	cAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGCGGCCCTGAGAgc/cgc																																																																															
NF1	4763	MSKCC	GRCh37	17	29560191	29560191	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	115	377	0	ENST00000358273.4:c.3668T>G	p.Ile1223Arg	p.I1223R	ENST00000358273	NM_001042492.2	1223	aTa/aGa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024347	31024347	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067298-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	128	399	0	ENST00000375687.4:c.3832A>C	p.Asn1278His	p.N1278H	ENST00000375687	NM_015338.5	1278	Aat/Cat																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600330	10600330	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	48	394	0	ENST00000171111.5:c.1525G>T	p.Gly509Trp	p.G509W	ENST00000171111	NM_203500.1	509	Ggg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0067317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	46	249	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812179	212812179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	65	332	0	ENST00000342788.4:c.397G>A	p.Glu133Lys	p.E133K	ENST00000342788	NM_005235.2	133	Gaa/Aaa																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2086919	2086919	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067317-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	57	464	0	ENST00000349721.2:c.2617G>T	p.Ala873Ser	p.A873S	ENST00000349721	NM_003070.3	873	Gcc/Tcc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786204864		P-0067318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	70	295	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0064274-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			262	34	319	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0064274-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			366	27	506	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578484	7578485	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0066863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	285	574	0	ENST00000269305.4:c.445dup	p.Ser149PhefsTer32	p.S149Ffs*32	ENST00000269305	NM_001126112.2	149	tcc/tTcc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42861436	42861437	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0066863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	129	342	0	ENST00000398585.3:c.433_434del	p.Phe145HisfsTer23	p.F145Hfs*23	ENST00000398585	NM_001135099.1	145	TTc/c																																																																															
ERF	2077	MSKCC	GRCh37	19	42753648	42753649	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGG			P-0066863-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	240	496	0	ENST00000222329.4:c.612_615dup	p.Ala206ProfsTer24	p.A206Pfs*24	ENST00000222329	NM_006494.2	205	-/CCGC																																																																															
KIT	3815	MSKCC	GRCh37	4	55594075	55594075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	126	367	1	ENST00000288135.5:c.1861G>A	p.Ala621Thr	p.A621T	ENST00000288135	NM_000222.2	621	Gct/Act																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190834	11190834	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0067290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	129	332	0	ENST00000361445.4:c.5365G>T	p.Ala1789Ser	p.A1789S	ENST00000361445	NM_004958.3	1789	Gcc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913240		P-0067294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	68	351	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467362	66467362	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	70	470	0	ENST00000273854.3:c.907C>A	p.Gln303Lys	p.Q303K	ENST00000273854	NM_004439.5	303	Caa/Aaa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187500	32187500	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	89	509	0	ENST00000375023.3:c.1379A>G	p.Asn460Ser	p.N460S	ENST00000375023	NM_004557.3	460	aAc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0067297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	259	394	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0067297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	63	277	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398123121		P-0067297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	108	360	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828962	72828962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	90	409	0	ENST00000268489.5:c.7619C>T	p.Pro2540Leu	p.P2540L	ENST00000268489	NM_006885.3	2540	cCg/cTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858642	57858642	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751408248		P-0067297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	235	336	0	ENST00000228682.2:c.380G>A	p.Gly127Asp	p.G127D	ENST00000228682	NM_005269.2	127	gGc/gAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098879	47098879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	52	383	0	ENST00000409792.3:c.6395G>A	p.Arg2132Gln	p.R2132Q	ENST00000409792	NM_014159.6	2132	cGg/cAg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270565	98270565	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	44	214	0	ENST00000331920.6:c.79C>G	p.Pro27Ala	p.P27A	ENST00000331920	NM_000264.3	27	Ccg/Gcg																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898399	63898399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	81	225	0	ENST00000295900.6:c.125C>T	p.Pro42Leu	p.P42L	ENST00000295900	NM_000333.3	42	cCt/cTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0067307-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	62	424	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520001		P-0067307-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	36	460	0	ENST00000269305.4:c.645T>G	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agG																																																																															
NF1	4763	MSKCC	GRCh37	17	29670071	29670071	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1060500286		P-0067307-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	59	364	0	ENST00000358273.4:c.7107G>A	p.Trp2369Ter	p.W2369*	ENST00000358273	NM_001042492.2	2369	tgG/tgA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0067313-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			58	17	296	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112174835	112174835	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0067313-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	48	502	2	ENST00000257430.4:c.3544A>T	p.Lys1182Ter	p.K1182*	ENST00000257430	NM_000038.5	1182	Aaa/Taa																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206652308	206652308	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782430885		P-0067313-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	153	493	3	ENST00000367120.3:c.1015G>A	p.Val339Met	p.V339M	ENST00000367120	NM_014002.3	339	Gtg/Atg																																																																															
ALK	238	MSKCC	GRCh37	2	29432674	29432674	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770027238		P-0067313-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	104	400	0	ENST00000389048.3:c.3814G>A	p.Gly1272Arg	p.G1272R	ENST00000389048	NM_004304.4	1272	Ggg/Agg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68972915	68972915	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs201372935		P-0067313-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	28	332	3	ENST00000288368.4:c.1240G>A	p.Glu414Lys	p.E414K	ENST00000288368	NM_024870.2	414	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7590694	7590694	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0067313-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	146	420	0	ENST00000269305.4:c.-29+1G>T		p.X10_splice	ENST00000269305	NM_001126112.2	10																																																																																
MAP2K1	5604	MSKCC	GRCh37	15	66727485	66727485	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067313-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	8	418	0	ENST00000307102.5:c.201C>A	p.Asp67Glu	p.D67E	ENST00000307102	NM_002755.3	67	gaC/gaA																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750393	41750393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067313-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	99	486	2	ENST00000226382.2:c.235G>A	p.Ala79Thr	p.A79T	ENST00000226382	NM_003924.3	79	Gcc/Acc																																																																															
PGR	5241	MSKCC	GRCh37	11	100996806	100996806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067313-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	62	426	1	ENST00000325455.5:c.1721C>T	p.Ala574Val	p.A574V	ENST00000325455	NM_001202474.3	574	gCa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0042732-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			10	258	519	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0042732-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			0	270	364	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952100	178952100	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042732-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			130	139	373	0	ENST00000263967.3:c.3155C>A	p.Thr1052Lys	p.T1052K	ENST00000263967	NM_006218.2	1052	aCa/aAa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640155	3640155	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042732-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			475	48	489	0	ENST00000294008.3:c.3484G>C	p.Glu1162Gln	p.E1162Q	ENST00000294008	NM_032444.2	1162	Gag/Cag																																																																															
GAB2	9846	MSKCC	GRCh37	11	77930434	77930434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042732-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			193	186	448	0	ENST00000361507.4:c.1915G>A	p.Glu639Lys	p.E639K	ENST00000361507	NM_080491.2	639	Gag/Aag																																																																															
INSR	3643	MSKCC	GRCh37	19	7184406	7184406	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042732-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			133	124	403	0	ENST00000302850.5:c.895del	p.Gln299ArgfsTer23	p.Q299Rfs*23	ENST00000302850	NM_000208.2	299	Cag/ag																																																																															
XPO1	7514	MSKCC	GRCh37	2	61710009	61710148	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGACCTCCCAAAGTGCTGGGATTATAGGCGTGAGGCCCTGTGCCCAGCTGGCACTTAACATTTAAATCGTATTAAATTCTTACCAGCAGTATGTGAAGTGTCTGTCACAACAGAAAAGATATGCTGGAGAATATCACAAA	CGACCTCCCAAAGTGCTGGGATTATAGGCGTGAGGCCCTGTGCCCAGCTGGCACTTAACATTTAAATCGTATTAAATTCTTACCAGCAGTATGTGAAGTGTCTGTCACAACAGAAAAGATATGCTGGAGAATATCACAAA	-			P-0042732-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			116	61	117	0	ENST00000401558.2:c.2756_2812+83del		p.X919_splice	ENST00000401558	NM_003400.3	919																																																																																
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055606-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			141	328	628	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186506975	186506975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055606-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	242	494	0	ENST00000323963.5:c.1141G>A	p.Asp381Asn	p.D381N	ENST00000323963		381	Gac/Aac																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518095	176518095	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055606-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			457	288	616	0	ENST00000292408.4:c.593G>T	p.Gly198Val	p.G198V	ENST00000292408	NM_213647.1	198	gGa/gTa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120669	115120669	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055606-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			160	618	603	0	ENST00000257566.3:c.337T>C	p.Trp113Arg	p.W113R	ENST00000257566	NM_016569.3	113	Tgg/Cgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065029-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			508	33	359	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0065029-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			324	17	232	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143352387	143352387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065029-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	21	275	0	ENST00000262992.4:c.26C>T	p.Ser9Leu	p.S9L	ENST00000262992	NM_001101669.1	9	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0066090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	206	712	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0066090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	395	378	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110665	8110665	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066090-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	185	540	0	ENST00000585124.1:c.227A>G	p.Asp76Gly	p.D76G	ENST00000585124	NM_004217.3	76	gAc/gGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0066367-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			102	22	513	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0066586-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			195	193	447	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
KDR	3791	MSKCC	GRCh37	4	55961055	55961055	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1229432573		P-0066586-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	68	460	0	ENST00000263923.4:c.2885G>A	p.Arg962His	p.R962H	ENST00000263923	NM_002253.2	962	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0066586-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			144	76	320	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410117	63410117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066586-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			247	177	634	0	ENST00000330258.3:c.3050G>A	p.Gly1017Glu	p.G1017E	ENST00000330258	NM_152424.3	1017	gGg/gAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0066664-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	11	227	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579327	7579327	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066664-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	41	438	0	ENST00000269305.4:c.360G>C	p.Lys120Asn	p.K120N	ENST00000269305	NM_001126112.2	120	aaG/aaC																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851754	134851754	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56396912		P-0066664-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	37	491	0	ENST00000398015.3:c.1160C>T	p.Thr387Met	p.T387M	ENST00000398015	NM_004441.4	387	aCg/aTg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149505130	149505130	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066664-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	24	440	0	ENST00000261799.4:c.1685A>G	p.Tyr562Cys	p.Y562C	ENST00000261799	NM_002609.3	562	tAc/tGc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0066664-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	26	445	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589268	67589268	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066664-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	14	308	0	ENST00000274335.5:c.1256A>G	p.Lys419Arg	p.K419R	ENST00000274335		419	aAa/aGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0066820-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			660	61	507	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041585	47041585	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066820-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			742	64	495	1	ENST00000329236.7:c.1576C>T	p.Gln526Ter	p.Q526*	ENST00000329236	NM_001204466.1	526	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0066820-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			451	46	302	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62292808	62292808	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T			P-0066820-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			712	46	419	0	ENST00000482936.1:c.260C>T	p.Ser87Leu	p.S87L	ENST00000482936		87	tCa/tTa																																																																															
PARP1	142	MSKCC	GRCh37	1	226595602	226595602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066820-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			517	41	353	0	ENST00000366794.5:c.29G>A	p.Arg10Gln	p.R10Q	ENST00000366794	NM_001618.3	10	cGa/cAa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505354	25505354	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066820-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			572	38	388	0	ENST00000264709.3:c.404G>T	p.Gly135Val	p.G135V	ENST00000264709	NM_175629.2	135	gGc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0066980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	69	314	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14014062	14014062	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	83	515	0	ENST00000311895.7:c.41del	p.Pro14ArgfsTer19	p.P14Rfs*19	ENST00000311895	NM_005236.2	14	Ccg/cg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100945	27100945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	114	615	0	ENST00000324856.7:c.4227G>T	p.Gln1409His	p.Q1409H	ENST00000324856	NM_006015.4	1409	caG/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067048-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			461	33	331	0	ENST00000269305.4:c.772G>C	p.Glu258Gln	p.E258Q	ENST00000269305	NM_001126112.2	258	Gaa/Caa																																																																															
RET	5979	MSKCC	GRCh37	10	43606815	43606815	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138624658		P-0067048-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			675	90	501	0	ENST00000355710.3:c.1424G>A	p.Arg475Gln	p.R475Q	ENST00000355710	NM_020975.4	475	cGg/cAg																																																																															
AURKA	6790	MSKCC	GRCh37	20	54956587	54956587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067048-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			790	60	264	0	ENST00000312783.6:c.607G>A	p.Ala203Thr	p.A203T	ENST00000312783	NM_198436.1	203	Gct/Act																																																																															
AURKA	6790	MSKCC	GRCh37	20	54956557	54956557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067048-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			817	66	257	0	ENST00000312783.6:c.637G>A	p.Ala213Thr	p.A213T	ENST00000312783	NM_198436.1	213	Gca/Aca																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067048-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			594	79	409	0	ENST00000359013.4:c.1658G>T	p.Arg553Leu	p.R553L	ENST00000359013	NM_001024847.2	553	cGt/cTt																																																																															
AURKA	6790	MSKCC	GRCh37	20	54956533	54956533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067048-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			762	65	224	0	ENST00000312783.6:c.661G>A	p.Glu221Lys	p.E221K	ENST00000312783	NM_198436.1	221	Gaa/Aaa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47144903	47144903	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067048-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			587	77	247	0	ENST00000409792.3:c.4850C>A	p.Ala1617Asp	p.A1617D	ENST00000409792	NM_014159.6	1617	gCc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0067090-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			306	121	340	0	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0067121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			552	364	473	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0067121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			424	160	469	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076870	41076870	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751972373		P-0067121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			366	101	272	0	ENST00000373198.4:c.1550C>T	p.Thr517Met	p.T517M	ENST00000373198	NM_133170.3	517	aCg/aTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41420005	41420005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			586	130	425	0	ENST00000373198.4:c.316C>T	p.His106Tyr	p.H106Y	ENST00000373198	NM_133170.3	106	Cat/Tat																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249456	153249456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			449	135	353	0	ENST00000281708.4:c.1322G>A	p.Arg441Gln	p.R441Q	ENST00000281708	NM_033632.3	441	cGg/cAg																																																																															
CDH1	999	MSKCC	GRCh37	16	68867192	68867192	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0067121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			520	122	362	0	ENST00000261769.5:c.2440-1G>C		p.X814_splice	ENST00000261769	NM_004360.3	814																																																																																
ARID2	196528	MSKCC	GRCh37	12	46243391	46243391	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			549	135	375	0	ENST00000334344.6:c.1744A>G	p.Arg582Gly	p.R582G	ENST00000334344	NM_152641.2	582	Aga/Gga																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371721	225371721	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0067121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			488	134	342	0	ENST00000264414.4:c.884-1G>A		p.X295_splice	ENST00000264414	NM_003590.4	295																																																																																
FAT1	2195	MSKCC	GRCh37	4	187542846	187542846	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0067121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			320	124	376	0	ENST00000441802.2:c.4894G>T	p.Glu1632Ter	p.E1632*	ENST00000441802	NM_005245.3	1632	Gag/Tag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117680992	117680992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			417	112	315	0	ENST00000368508.3:c.3628C>T	p.His1210Tyr	p.H1210Y	ENST00000368508	NM_002944.2	1210	Cac/Tac																																																																															
SESN1	27244	MSKCC	GRCh37	6	109314054	109314054	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			438	86	291	1	ENST00000436639.2:c.1169A>G	p.Asp390Gly	p.D390G	ENST00000436639	NM_014454.2	390	gAt/gGt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117647416	117647416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			362	111	391	0	ENST00000368508.3:c.5528G>A	p.Gly1843Glu	p.G1843E	ENST00000368508	NM_002944.2	1843	gGa/gAa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276642	15276642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			654	186	433	0	ENST00000263388.2:c.5623C>G	p.Pro1875Ala	p.P1875A	ENST00000263388	NM_000435.2	1875	Ccc/Gcc																																																																															
EP300	2033	MSKCC	GRCh37	22	41568617	41568617	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			688	165	414	1	ENST00000263253.7:c.4567G>C	p.Glu1523Gln	p.E1523Q	ENST00000263253	NM_001429.3	1523	Gag/Cag																																																																															
RET	5979	MSKCC	GRCh37	10	43596131	43596131	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067121-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			489	203	387	0	ENST00000355710.3:c.298A>T	p.Ser100Cys	p.S100C	ENST00000355710	NM_020975.4	100	Agc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223650	36223650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	34	768	0	ENST00000222270.7:c.6200G>T	p.Gly2067Val	p.G2067V	ENST00000222270	NM_014727.1	2067	gGc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0067162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	17	388	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483922	88483922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	28	582	0	ENST00000360948.2:c.1648G>A	p.Gly550Arg	p.G550R	ENST00000360948	NM_001012338.2	550	Gga/Aga																																																																															
ABL1	25	MSKCC	GRCh37	9	133760627	133760627	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	39	734	0	ENST00000318560.5:c.2950A>T	p.Thr984Ser	p.T984S	ENST00000318560	NM_005157.4	984	Acg/Tcg																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544622	86544622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	25	635	0	ENST00000262426.4:c.447G>T	p.Gln149His	p.Q149H	ENST00000262426	NM_001451.2	149	caG/caT																																																																															
AR	367	MSKCC	GRCh37	X	66765712	66765712	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs756810389		P-0067162-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	37	717	1	ENST00000374690.3:c.724G>T	p.Ala242Ser	p.A242S	ENST00000374690	NM_000044.3	242	Gca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0067163-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			716	59	826	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374991	45374991	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067163-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	39	649	0	ENST00000262160.6:c.852G>C	p.Gln284His	p.Q284H	ENST00000262160	NM_005901.5	284	caG/caC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0067163-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	33	396	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974681	21974681	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067163-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	42	697	0	ENST00000304494.5:c.146del	p.Ile49ThrfsTer4	p.I49Tfs*4	ENST00000304494	NM_000077.4	49	aTc/ac																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243951	46243951	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0067165-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	49	486	0	ENST00000334344.6:c.2045C>G	p.Ser682Ter	p.S682*	ENST00000334344	NM_152641.2	682	tCa/tGa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425146	49425146	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067165-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	45	717	0	ENST00000301067.7:c.13342del	p.His4448ThrfsTer71	p.H4448Tfs*71	ENST00000301067	NM_003482.3	4448	Cac/ac																																																																															
CDC73	79577	MSKCC	GRCh37	1	193104711	193104711	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	168	285	0	ENST00000367435.3:c.415C>T	p.Arg139Ter	p.R139*	ENST00000367435	NM_024529.4	139	Cga/Tga																																																																															
NUF2	83540	MSKCC	GRCh37	1	163298075	163298075	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	160	278	0	ENST00000271452.3:c.256A>T	p.Ser86Cys	p.S86C	ENST00000271452	NM_145697.2	86	Agc/Tgc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206653231	206653231	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs145306712		P-0067168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			802	231	530	0	ENST00000367120.3:c.1202A>G	p.Lys401Arg	p.K401R	ENST00000367120	NM_014002.3	401	aAg/aGg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549473	21549474	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	186	422	0	ENST00000382592.4:c.2802dup	p.Pro935SerfsTer9	p.P935Sfs*9	ENST00000382592	NM_014572.2	934	-/T																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647526	23647526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	151	352	0	ENST00000261584.4:c.341G>A	p.Gly114Glu	p.G114E	ENST00000261584	NM_024675.3	114	gGa/gAa																																																																															
YES1	7525	MSKCC	GRCh37	18	743335	743335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	177	364	0	ENST00000314574.4:c.805G>A	p.Ala269Thr	p.A269T	ENST00000314574	NM_005433.3	269	Gct/Act																																																																															
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0067168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	180	455	0	ENST00000326873.7:c.152_153del	p.Met51ArgfsTer111	p.M51Rfs*111	ENST00000326873	NM_000455.4	51	aTG/a																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610484	10610490	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGCTG	GCTGCTG	-			P-0067168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	170	415	0	ENST00000171111.5:c.220_226del	p.Gln74CysfsTer81	p.Q74Cfs*81	ENST00000171111	NM_203500.1	74	CAGCAGCtg/tg																																																																															
ABL1	25	MSKCC	GRCh37	9	133756030	133756030	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	187	408	0	ENST00000318560.5:c.1657T>C	p.Ser553Pro	p.S553P	ENST00000318560	NM_005157.4	553	Tcc/Ccc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0067171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	159	395	11	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0067171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	35	335	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																																
BAP1	8314	MSKCC	GRCh37	3	52441265	52441265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	48	508	0	ENST00000460680.1:c.505C>T	p.His169Tyr	p.H169Y	ENST00000460680	NM_004656.3	169	Cac/Tac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099314	27099314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	40	382	1	ENST00000324856.7:c.3551C>T	p.Ser1184Leu	p.S1184L	ENST00000324856	NM_006015.4	1184	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0067194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	43	464	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974678	21974678	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs587778189		P-0067194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	31	431	0	ENST00000304494.5:c.149A>G	p.Gln50Arg	p.Q50R	ENST00000304494	NM_000077.4	50	cAg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0067194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	22	292	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720741	89720741	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs371387815		P-0067195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			52	13	90	0	ENST00000371953.3:c.892C>T	p.Gln298Ter	p.Q298*	ENST00000371953	NM_000314.4	298	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	147	548	0	ENST00000269305.4:c.470T>A	p.Val157Asp	p.V157D	ENST00000269305	NM_001126112.2	157	gTc/gAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259661	16259661	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0067195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	164	588	0	ENST00000375759.3:c.6926C>G	p.Ser2309Ter	p.S2309*	ENST00000375759	NM_015001.2	2309	tCa/tGa																																																																															
TET2	54790	MSKCC	GRCh37	4	106156058	106156059	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACT			P-0067195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	101	551	0	ENST00000380013.4:c.965_970dup	p.Leu322_Gln323dup	p.L322_Q323dup	ENST00000380013	NM_001127208.2	322	gaa/gaACAACTa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991623	72991623	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	136	545	0	ENST00000268489.5:c.2422G>C	p.Val808Leu	p.V808L	ENST00000268489	NM_006885.3	808	Gtg/Ctg																																																																															
TET2	54790	MSKCC	GRCh37	4	106156168	106156169	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCAGCAATTT			P-0067195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	91	525	0	ENST00000380013.4:c.1073_1082dup	p.Ala362GlnfsTer10	p.A362Qfs*10	ENST00000380013	NM_001127208.2	357	agc/aGCAGCAATTTgc																																																																															
NF1	4763	MSKCC	GRCh37	17	29527490	29527520	+	frameshift_variant	Frame_Shift_Del	DEL	TAGGCAGCTGACAGAAAGTGCTGCAATTGCC	TAGGCAGCTGACAGAAAGTGCTGCAATTGCC	-			P-0067195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	147	392	0	ENST00000358273.4:c.940_970del	p.Arg314ValfsTer52	p.R314Vfs*52	ENST00000358273	NM_001042492.2	313	agTAGGCAGCTGACAGAAAGTGCTGCAATTGCC/ag																																																																															
TET2	54790	MSKCC	GRCh37	4	106156288	106156288	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	169	650	0	ENST00000380013.4:c.1189A>G	p.Thr397Ala	p.T397A	ENST00000380013	NM_001127208.2	397	Aca/Gca																																																																															
TET2	54790	MSKCC	GRCh37	4	106158269	106158287	+	frameshift_variant	Frame_Shift_Del	DEL	AAATGTCAGGGCCAGTCAC	AAATGTCAGGGCCAGTCAC	TCT			P-0067195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	91	534	1	ENST00000380013.4:c.3170_3188delinsTCT	p.Glu1057ValfsTer2	p.E1057Vfs*2	ENST00000380013	NM_001127208.2	1057	gAAATGTCAGGGCCAGTCACa/gTCTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0067196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	211	415	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440904	56440904	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1458799446		P-0067196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	253	475	1	ENST00000407977.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000407977		145	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593507	48593507	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1367209662		P-0067196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	166	375	0	ENST00000342988.3:c.1258C>T	p.Arg420Cys	p.R420C	ENST00000342988	NM_005359.5	420	Cgt/Tgt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81557418	81557418	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	39	352	0	ENST00000298171.2:c.398T>G	p.Ile133Ser	p.I133S	ENST00000298171	NM_000369.2	133	aTt/aGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0067196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	63	303	1	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TET1	80312	MSKCC	GRCh37	10	70432744	70432744	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	38	392	0	ENST00000373644.4:c.4766A>C	p.Lys1589Thr	p.K1589T	ENST00000373644	NM_030625.2	1589	aAg/aCg																																																																															
APLNR	187	MSKCC	GRCh37	11	57004099	57004099	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs772893901		P-0067196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	92	480	1	ENST00000257254.3:c.380G>A	p.Arg127His	p.R127H	ENST00000257254		127	cGc/cAc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294342	1294342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	98	604	0	ENST00000310581.5:c.659G>T	p.Gly220Val	p.G220V	ENST00000310581	NM_198253.2	220	gGt/gTt																																																																															
MED12	9968	MSKCC	GRCh37	X	70355027	70355027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	126	242	0	ENST00000374080.3:c.4949C>T	p.Thr1650Met	p.T1650M	ENST00000374080		1650	aCg/aTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176710903	176710903	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	161	390	0	ENST00000439151.2:c.6125T>G	p.Leu2042Arg	p.L2042R	ENST00000439151	NM_022455.4	2042	cTt/cGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591921	48591921	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0067196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	187	420	0	ENST00000342988.3:c.1084T>A	p.Phe362Ile	p.F362I	ENST00000342988	NM_005359.5	362	Ttt/Att																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81960773	81960773	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0067196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	69	439	0	ENST00000359376.3:c.2504T>A	p.Leu835Gln	p.L835Q	ENST00000359376	NM_002661.3	835	cTa/cAa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435843	110435843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	147	549	0	ENST00000375856.3:c.2558C>T	p.Ala853Val	p.A853V	ENST00000375856	NM_003749.2	853	gCc/gTc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779746	3779746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	197	483	0	ENST00000262367.5:c.5302C>T	p.Arg1768Cys	p.R1768C	ENST00000262367	NM_004380.2	1768	Cgc/Tgc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157469793	157469793	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1436675945		P-0067197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	158	457	1	ENST00000346085.5:c.2587C>T	p.Pro863Ser	p.P863S	ENST00000346085	NM_020732.3	863	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577505	7577505	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	182	384	2	ENST00000269305.4:c.776del	p.Asp259AlafsTer86	p.D259Afs*86	ENST00000269305	NM_001126112.2	259	gAc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0067207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	61	512	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48586250	48586250	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0067207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	40	414	0	ENST00000342988.3:c.919G>T	p.Glu307Ter	p.E307*	ENST00000342988	NM_005359.5	307	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0067207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	75	385	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46255795	46255795	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	45	462	0	ENST00000371998.3:c.407T>C	p.Phe136Ser	p.F136S	ENST00000371998		136	tTt/tCt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482839	67482839	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	57	551	0	ENST00000327367.4:c.1243G>T	p.Gly415Cys	p.G415C	ENST00000327367	NM_005902.3	415	Ggc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288430	15288430	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	23	538	0	ENST00000263388.2:c.4309T>C	p.Phe1437Leu	p.F1437L	ENST00000263388	NM_000435.2	1437	Ttc/Ctc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0067210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	31	355	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51535061	51535061	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200111039		P-0067210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	63	501	0	ENST00000260433.2:c.49G>A	p.Val17Met	p.V17M	ENST00000260433		17	Gtg/Atg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143324197	143324197	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	51	386	0	ENST00000262992.4:c.266A>G	p.Asp89Gly	p.D89G	ENST00000262992	NM_001101669.1	89	gAc/gGc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32930688	32930697	+	frameshift_variant	Frame_Shift_Del	DEL	GAATCTCTCT	GAATCTCTCT	-			P-0067210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	89	579	0	ENST00000380152.3:c.7562_7571del	p.Ile2521LysfsTer4	p.I2521Kfs*4	ENST00000380152		2520	cGAATCTCTCTg/cg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260200	19260217	+	inframe_deletion	In_Frame_Del	DEL	CTTCTTCATCAGCCCGAA	CTTCTTCATCAGCCCGAA	-			P-0067210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	46	526	0	ENST00000162023.5:c.76_93del	p.Phe26_Lys31del	p.F26_K31del	ENST00000162023		26	TTCGGGCTGATGAAGAAG/-																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	33	270	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782177		P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			28	1173	512	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53243983	53243983	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			8	1274	272	0	ENST00000375401.3:c.1010A>G	p.Asp337Gly	p.D337G	ENST00000375401	NM_004187.3	337	gAc/gGc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678504	88678504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	346	530	0	ENST00000360948.2:c.1032G>T	p.Glu344Asp	p.E344D	ENST00000360948	NM_001012338.2	344	gaG/gaT																																																																															
IGF2	3481	MSKCC	GRCh37	11	2156620	2156620	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			47	746	559	0	ENST00000434045.2:c.302G>C	p.Cys101Ser	p.C101S	ENST00000434045	NM_001127598.1	101	tGt/tCt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707573	176707573	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	917	483	0	ENST00000439151.2:c.5630G>T	p.Arg1877Leu	p.R1877L	ENST00000439151	NM_022455.4	1877	cGt/cTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48934155	48934155	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1	129	321	0	ENST00000267163.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000267163	NM_000321.2	204	Gaa/Taa																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137524695	137524695	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs374675376		P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	225	432	0	ENST00000367739.4:c.674G>T	p.Gly225Val	p.G225V	ENST00000367739	NM_000416.2	225	gGt/gTt																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1314940	1314940	+	downstream_gene_variant	3'Flank	SNP	G	G	A			P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	244	527	0				ENST00000381566																																																																																		
SMARCA4	6597	MSKCC	GRCh37	19	11141552	11141552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			24	703	501	0	ENST00000344626.4:c.3529G>T	p.Asp1177Tyr	p.D1177Y	ENST00000344626	NM_003072.3	1177	Gac/Tac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714459	40714459	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs772137373		P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			33	1274	533	0	ENST00000373198.4:c.3938G>T	p.Gly1313Val	p.G1313V	ENST00000373198	NM_133170.3	1313	gGg/gTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231177	46231177	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			6	324	440	0	ENST00000334344.6:c.1097G>T	p.Arg366Met	p.R366M	ENST00000334344	NM_152641.2	366	aGg/aTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111562	8111562	+	splice_donor_variant	Splice_Site	SNP	G	G	C	rs112399242		P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	539	389	0	ENST00000346208.3:c.1047+1G>C		p.X349_splice	ENST00000346208		349																																																																																
MYCL	4610	MSKCC	GRCh37	1	40366749	40366749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			874	391	652	0	ENST00000397332.2:c.448G>A	p.Gly150Arg	p.G150R	ENST00000397332	NM_001033082.2	150	Ggg/Agg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922751	44922751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			11	1255	235	0	ENST00000377967.4:c.1612G>T	p.Val538Phe	p.V538F	ENST00000377967	NM_021140.2	538	Gtc/Ttc																																																																															
ATRX	546	MSKCC	GRCh37	X	76918888	76918888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			9	416	195	0	ENST00000373344.5:c.4103G>A	p.Gly1368Asp	p.G1368D	ENST00000373344	NM_000489.3	1368	gGc/gAc																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023002	33023002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	357	506	0	ENST00000300177.4:c.111C>A	p.Asp37Glu	p.D37E	ENST00000300177	NM_001191322.1	37	gaC/gaA																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881458	111881458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	321	544	0	ENST00000393256.3:c.136G>T	p.Gly46Cys	p.G46C	ENST00000393256	NM_006538.4	46	Ggc/Tgc																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56798136	56798136	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	186	342	0	ENST00000337432.4:c.867G>T	p.Lys289Asn	p.K289N	ENST00000337432	NM_058216.2	289	aaG/aaT																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610432	81610432	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			742	344	513	0	ENST00000298171.2:c.2030T>A	p.Leu677His	p.L677H	ENST00000298171	NM_000369.2	677	cTc/cAc																																																																															
BLM	641	MSKCC	GRCh37	15	91354598	91354598	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	277	481	0	ENST00000355112.3:c.4038G>T	p.Lys1346Asn	p.K1346N	ENST00000355112	NM_000057.2	1346	aaG/aaT																																																																															
FH	2271	MSKCC	GRCh37	1	241682988	241682988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	671	495	0	ENST00000366560.3:c.35G>A	p.Arg12His	p.R12H	ENST00000366560	NM_000143.3	12	cGt/cAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104705	69104705	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			799	362	583	0	ENST00000288368.4:c.4549C>G	p.Leu1517Val	p.L1517V	ENST00000288368	NM_024870.2	1517	Ctg/Gtg																																																																															
ALB	213	MSKCC	GRCh37	4	74277780	74277780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			36	838	349	0	ENST00000295897.4:c.781G>A	p.Asp261Asn	p.D261N	ENST00000295897	NM_000477.5	261	Gat/Aat																																																																															
LYN	4067	MSKCC	GRCh37	8	56863304	56863304	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs141769918		P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	232	396	0	ENST00000519728.1:c.448G>T	p.Ala150Ser	p.A150S	ENST00000519728	NM_002350.3	150	Gct/Tct																																																																															
NSD1	64324	MSKCC	GRCh37	5	176710849	176710849	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	1052	451	0	ENST00000439151.2:c.6071A>T	p.Gln2024Leu	p.Q2024L	ENST00000439151	NM_022455.4	2024	cAg/cTg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264309	30264309	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	178	264	0	ENST00000322652.5:c.44G>T	p.Gly15Val	p.G15V	ENST00000322652	NM_015355.2	15	gGg/gTg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35860996	35860996	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1054	531	452	0	ENST00000303115.3:c.125G>T	p.Cys42Phe	p.C42F	ENST00000303115	NM_002185.3	42	tGc/tTc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63965625	63965625	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	308	417	0	ENST00000295900.6:c.534G>T	p.Leu178Phe	p.L178F	ENST00000295900	NM_000333.3	178	ttG/ttT																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143044479	143044479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067252-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			4	307	354	0	ENST00000262992.4:c.1983G>T	p.Leu661Phe	p.L661F	ENST00000262992	NM_001101669.1	661	ttG/ttT																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0067255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	113	396	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175133	112175133	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0067255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	112	378	0	ENST00000257430.4:c.3842C>A	p.Ser1281Ter	p.S1281*	ENST00000257430	NM_000038.5	1281	tCa/tAa																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971145	13971145	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	31	324	0	ENST00000405192.2:c.784G>T	p.Asp262Tyr	p.D262Y	ENST00000405192	NM_001163147.1	262	Gat/Tat																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522751	67522751	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747723877		P-0067255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	69	364	0	ENST00000274335.5:c.248C>T	p.Ser83Leu	p.S83L	ENST00000274335		83	tCg/tTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0067262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	134	334	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074055	8074055	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1032815946		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	30	513	0	ENST00000377482.5:c.604C>T	p.Arg202Cys	p.R202C	ENST00000377482	NM_018948.3	202	Cgt/Tgt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11319439	11319439	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs368184120		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	133	517	0	ENST00000361445.4:c.28A>G	p.Thr10Ala	p.T10A	ENST00000361445	NM_004958.3	10	Acc/Gcc																																																																															
STK40	83931	MSKCC	GRCh37	1	36826852	36826852	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1253659600		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	59	441	0	ENST00000373129.3:c.82A>G	p.Asn28Asp	p.N28D	ENST00000373129	NM_032017.1	28	Aat/Gat																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720712	89720712	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			72	39	105	0	ENST00000371953.3:c.867del	p.Val290Ter	p.V290*	ENST00000371953	NM_000314.4	288	gAa/ga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	71	377	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14303202	14303202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	91	363	0	ENST00000256196.4:c.473C>T	p.Ala158Val	p.A158V	ENST00000256196		158	gCa/gTa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137065	64137065	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767134558		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	81	483	0	ENST00000334205.4:c.1576G>A	p.Val526Met	p.V526M	ENST00000334205	NM_003942.2	526	Gtg/Atg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	19	191	1	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307406	118307406	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	28	232	0	ENST00000534358.1:c.179T>C	p.Val60Ala	p.V60A	ENST00000534358	NM_005933.3	60	gTg/gCg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	45	627	0	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
KDM5A	5927	MSKCC	GRCh37	12	420175	420175	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1036242026		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	49	496	0	ENST00000399788.2:c.3092G>A	p.Arg1031His	p.R1031H	ENST00000399788	NM_001042603.1	1031	cGc/cAc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	79	456	0	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	33	275	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420660	49420660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	101	554	0	ENST00000301067.7:c.15089G>A	p.Arg5030His	p.R5030H	ENST00000301067	NM_003482.3	5030	cGt/cAt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495511	56495511	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	108	620	0	ENST00000267101.3:c.3701C>A	p.Ser1234Tyr	p.S1234Y	ENST00000267101	NM_001982.3	1234	tCt/tAt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118704	115118706	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	50	548	0	ENST00000257566.3:c.635_637del	p.Asn212del	p.N212del	ENST00000257566	NM_016569.3	212	aACAtt/att																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	67	541	3	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435793	110435793	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761634910		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	103	514	0	ENST00000375856.3:c.2608G>A	p.Val870Met	p.V870M	ENST00000375856	NM_003749.2	870	Gtg/Atg																																																																															
AKT1	207	MSKCC	GRCh37	14	105242073	105242075	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs768025881		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	103	486	1	ENST00000349310.3:c.349_351del	p.Glu117del	p.E117del	ENST00000349310	NM_001014432.1	117	GAG/-																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38616977	38616977	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	20	280	0	ENST00000299084.4:c.395del	p.Asn132MetfsTer20	p.N132Mfs*20	ENST00000299084	NM_152594.2	130	tcA/tc																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	27	473	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
B2M	567	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	42	408	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	98	558	6	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820982	3820982	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	32	386	0	ENST00000262367.5:c.2469G>T	p.Gln823His	p.Q823H	ENST00000262367	NM_004380.2	823	caG/caT																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274172	10274173	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	64	441	0	ENST00000330684.3:c.96dup	p.Ala33ArgfsTer105	p.A33Rfs*105	ENST00000330684	NM_001134407.1	32	-/C																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14026103	14026104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	116	438	0	ENST00000311895.7:c.1069dup	p.Ile357AsnfsTer3	p.I357Nfs*3	ENST00000311895	NM_005236.2	355	gaa/gAaa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992169	72992169	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs758458326		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	38	607	0	ENST00000268489.5:c.1876C>A	p.Leu626Ile	p.L626I	ENST00000268489	NM_006885.3	626	Ctc/Atc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349171	89349171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	119	576	0	ENST00000301030.4:c.3779C>T	p.Ser1260Leu	p.S1260L	ENST00000301030	NM_001256183.1	1260	tCg/tTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351595	89351595	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	127	555	1	ENST00000301030.4:c.1355del	p.Asn452IlefsTer3	p.N452Ifs*3	ENST00000301030	NM_001256183.1	452	aAt/at																																																																															
FANCA	2175	MSKCC	GRCh37	16	89815164	89815164	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752642945		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	92	389	0	ENST00000389301.3:c.3251G>A	p.Arg1084His	p.R1084H	ENST00000389301	NM_000135.2	1084	cGc/cAc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618327	37618327	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	57	415	0	ENST00000447079.4:c.3G>A	p.Met1?	p.M1?	ENST00000447079	NM_015083.1	1	atG/atA																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40441886	40441886	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	24	463	1	ENST00000345506.4:c.131A>G	p.Asp44Gly	p.D44G	ENST00000345506	NM_003152.3	44	gAt/gGt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39617680	39617680	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	23	406	0	ENST00000262039.4:c.1869del	p.Phe623LeufsTer43	p.F623Lfs*43	ENST00000262039	NM_002647.2	622	Ttt/tt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1627381	1627381	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113419714		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	97	495	2	ENST00000344749.5:c.343G>A	p.Ala115Thr	p.A115T	ENST00000344749	NM_001136139.2	115	Gca/Aca																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226578	2226579	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	113	658	0	ENST00000398665.3:c.4062dup	p.Ser1355LeufsTer183	p.S1355Lfs*183	ENST00000398665	NM_032482.2	1353	ttc/ttCc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5258060	5258060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770748688		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	51	406	0	ENST00000357368.4:c.674G>A	p.Arg225His	p.R225H	ENST00000357368	NM_002850.3	225	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274304	5274304	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	72	499	2	ENST00000357368.4:c.143del	p.Gly48ValfsTer17	p.G48Vfs*17	ENST00000357368	NM_002850.3	48	gGt/gt																																																																															
CALR	811	MSKCC	GRCh37	19	13049990	13049991	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	56	416	0	ENST00000316448.5:c.138dup	p.Gly47TrpfsTer13	p.G47Wfs*13	ENST00000316448	NM_004343.3	45	gat/gaTt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353819	15353819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	33	236	2	ENST00000263377.2:c.3061del	p.His1021IlefsTer47	p.H1021Ifs*47	ENST00000263377	NM_058243.2	1021	Cat/at																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354007	15354008	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	14	169	0	ENST00000263377.2:c.2872dup	p.Leu958ProfsTer135	p.L958Pfs*135	ENST00000263377	NM_058243.2	958	ctg/cCtg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	42	701	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
AKT2	208	MSKCC	GRCh37	19	40771132	40771132	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781407242		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	44	362	0	ENST00000392038.2:c.43C>T	p.Arg15Cys	p.R15C	ENST00000392038	NM_001626.4	15	Cgt/Tgt																																																																															
CIC	23152	MSKCC	GRCh37	19	42796594	42796594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762323815		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	90	501	0	ENST00000575354.2:c.3151G>A	p.Ala1051Thr	p.A1051T	ENST00000575354	NM_015125.3	1051	Gcc/Acc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905747	50905747	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	53	616	0	ENST00000440232.2:c.795G>A	p.Trp265Ter	p.W265*	ENST00000440232	NM_002691.3	265	tgG/tgA																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605204	46605204	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1459319402		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	64	432	1	ENST00000263734.3:c.1421G>C	p.Ser474Thr	p.S474T	ENST00000263734	NM_001430.4	474	aGc/aCc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630408	47630408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	20	516	0	ENST00000233146.2:c.78G>A	p.Met26Ile	p.M26I	ENST00000233146	NM_000251.2	26	atG/atA																																																																															
MSH2	4436	MSKCC	GRCh37	2	47705528	47705528	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	71	432	0	ENST00000233146.2:c.2332del	p.Cys778AlafsTer34	p.C778Afs*34	ENST00000233146	NM_000251.2	776	gcT/gc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99169316	99169316	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1320693278		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	93	516	0	ENST00000074304.5:c.1246G>A	p.Ala416Thr	p.A416T	ENST00000074304	NM_001134224.1	416	Gcc/Acc																																																																															
BARD1	580	MSKCC	GRCh37	2	215645923	215645923	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	80	527	0	ENST00000260947.4:c.675A>C	p.Glu225Asp	p.E225D	ENST00000260947	NM_000465.2	225	gaA/gaC																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660376	227660376	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756650445		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	28	503	0	ENST00000305123.5:c.3079C>T	p.Pro1027Ser	p.P1027S	ENST00000305123	NM_005544.2	1027	Ccc/Tcc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662683	227662683	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866580419		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	43	513	0	ENST00000305123.5:c.772C>T	p.Arg258Trp	p.R258W	ENST00000305123	NM_005544.2	258	Cgg/Tgg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	30946592	30946594	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs752094508		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	57	312	2	ENST00000375687.4:c.25_27del	p.Lys9del	p.K9del	ENST00000375687	NM_015338.5	5	cAGAag/cag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	67	537	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259157	36259157	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	85	574	0	ENST00000300305.3:c.334C>A	p.Leu112Met	p.L112M	ENST00000300305		112	Ctg/Atg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21348552	21348552	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754507552		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	105	652	0	ENST00000215739.8:c.1609C>T	p.Arg537Trp	p.R537W	ENST00000215739	NM_006767.3	537	Cgg/Tgg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21348891	21348891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	192	543	0	ENST00000215739.8:c.1660G>A	p.Ala554Thr	p.A554T	ENST00000215739	NM_006767.3	554	Gca/Aca																																																																															
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	110	625	1	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732934	30732934	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149847376		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	101	432	0	ENST00000359013.4:c.1622C>T	p.Thr541Met	p.T541M	ENST00000359013	NM_001024847.2	541	aCg/aTg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37050377	37050378	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	66	357	0	ENST00000231790.2:c.530dup	p.Leu177PhefsTer15	p.L177Ffs*15	ENST00000231790	NM_000249.3	176	att/aTtt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161957	47161958	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	95	504	0	ENST00000409792.3:c.4168dup	p.Ser1390PhefsTer8	p.S1390Ffs*8	ENST00000409792	NM_014159.6	1390	tca/tTca																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149243823	149243823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	58	355	0	ENST00000360632.3:c.995G>A	p.Ser332Asn	p.S332N	ENST00000360632	NM_015472.4	332	aGc/aAc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998128	169998128	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs753143066		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	46	354	2	ENST00000295797.4:c.826del	p.Thr276GlnfsTer7	p.T276Qfs*7	ENST00000295797	NM_002740.5	273	ttA/tt																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170015162	170015162	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368665283		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	81	385	0	ENST00000295797.4:c.1568G>A	p.Arg523Gln	p.R523Q	ENST00000295797	NM_002740.5	523	cGa/cAa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139876	55139876	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	98	414	0	ENST00000257290.5:c.1537G>C	p.Glu513Gln	p.E513Q	ENST00000257290	NM_006206.4	513	Gag/Cag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286184	66286184	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	58	395	0	ENST00000273854.3:c.1502A>T	p.Glu501Val	p.E501V	ENST00000273854	NM_004439.5	501	gAg/gTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	84	515	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541678	187541678	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377498159		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	56	518	1	ENST00000441802.2:c.6062G>A	p.Arg2021His	p.R2021H	ENST00000441802	NM_005245.3	2021	cGc/cAc																																																																															
SDHA	6389	MSKCC	GRCh37	5	230998	230998	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs940845256		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	97	406	0	ENST00000264932.6:c.778G>A	p.Gly260Arg	p.G260R	ENST00000264932	NM_004168.2	260	Ggg/Agg																																																																															
TERT	7015	MSKCC	GRCh37	5	1293773	1293773	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	96	626	0	ENST00000310581.5:c.1228A>G	p.Lys410Glu	p.K410E	ENST00000310581	NM_198253.2	410	Aag/Gag																																																																															
TERT	7015	MSKCC	GRCh37	5	1294552	1294552	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	97	520	0	ENST00000310581.5:c.449T>A	p.Val150Asp	p.V150D	ENST00000310581	NM_198253.2	150	gTt/gAt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753011	57753012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	84	514	2	ENST00000274289.3:c.1004dup	p.Leu335PhefsTer12	p.L335Ffs*12	ENST00000274289	NM_006622.3	335	ttg/ttTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	145	381	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564511	86564511	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	71	556	2	ENST00000274376.6:c.248del	p.Gly83GlufsTer4	p.G83Efs*4	ENST00000274376	NM_002890.2	81	ctG/ct																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	24	310	0	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675616	86675616	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	42	326	0	ENST00000274376.6:c.2552T>C	p.Ile851Thr	p.I851T	ENST00000274376	NM_002890.2	851	aTa/aCa																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	70	357	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175716	112175726	+	frameshift_variant	Frame_Shift_Del	DEL	AGTTCAGAGGG	AGTTCAGAGGG	-			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	91	563	0	ENST00000257430.4:c.4425_4435del	p.Val1476ProfsTer7	p.V1476Pfs*7	ENST00000257430	NM_000038.5	1475	gcAGTTCAGAGGGtc/gctc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046686	180046686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	35	691	0	ENST00000261937.6:c.2626G>A	p.Val876Met	p.V876M	ENST00000261937	NM_182925.4	876	Gtg/Atg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056511	26056511	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781230949		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	27	473	0	ENST00000343677.2:c.146C>T	p.Ala49Val	p.A49V	ENST00000343677	NM_005319.3	49	gCc/gTc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911159	29911159	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	24	390	0	ENST00000376809.5:c.458A>G	p.Asp153Gly	p.D153G	ENST00000376809	NM_002116.7	153	gAc/gGc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	26	363	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797286	32797286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	84	502	0	ENST00000374899.4:c.1823C>T	p.Ala608Val	p.A608V	ENST00000374899	NM_018833.2	608	gCt/gTt																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803522	32803522	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	67	488	0	ENST00000374899.4:c.637T>C	p.Cys213Arg	p.C213R	ENST00000374899	NM_018833.2	213	Tgc/Cgc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289083	33289083	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	36	581	0	ENST00000374542.5:c.469G>T	p.Gly157Trp	p.G157W	ENST00000374542	NM_001141970.1	157	Ggg/Tgg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117665221	117665221	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	66	425	0	ENST00000368508.3:c.4524+2T>C		p.X1508_splice	ENST00000368508	NM_002944.2	1508																																																																																
IFNGR1	3459	MSKCC	GRCh37	6	137519504	137519505	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	88	493	0	ENST00000367739.4:c.1132_1133dup	p.Ser378ArgfsTer6	p.S378Rfs*6	ENST00000367739	NM_000416.2	378	agt/agAGt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405991	157405991	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	106	601	0	ENST00000346085.5:c.2233G>T	p.Gly745Ter	p.G745*	ENST00000346085	NM_020732.3	745	Gga/Tga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157525104	157525104	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	56	464	0	ENST00000346085.5:c.4999A>G	p.Thr1667Ala	p.T1667A	ENST00000346085	NM_020732.3	1667	Act/Gct																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729709	41729709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768547360		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	35	554	1	ENST00000242208.4:c.820G>A	p.Gly274Arg	p.G274R	ENST00000242208	NM_002192.2	274	Gga/Aga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55225430	55225430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	20	372	0	ENST00000275493.2:c.1282G>A	p.Gly428Ser	p.G428S	ENST00000275493	NM_005228.3	428	Ggc/Agc																																																																															
HGF	3082	MSKCC	GRCh37	7	81359017	81359017	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	66	454	0	ENST00000222390.5:c.944del	p.Gly315AlafsTer25	p.G315Afs*25	ENST00000222390	NM_000601.4	315	gGc/gc																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	48	539	1	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859938	151859938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	89	587	0	ENST00000262189.6:c.10724C>T	p.Thr3575Ile	p.T3575I	ENST00000262189	NM_170606.2	3575	aCt/aTt																																																																															
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	95	393	2	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																															
NBN	4683	MSKCC	GRCh37	8	90983427	90983427	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	56	347	0	ENST00000265433.3:c.676del	p.Thr226HisfsTer5	p.T226Hfs*5	ENST00000265433	NM_002485.4	226	Aca/ca																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913138	39913138	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	111	445	0	ENST00000378444.4:c.4976+1del		p.X1659_splice	ENST00000378444	NM_001123385.1	1659																																																																																
ARAF	369	MSKCC	GRCh37	X	47424287	47424287	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	40	535	0	ENST00000377045.4:c.292A>G	p.Met98Val	p.M98V	ENST00000377045	NM_001654.4	98	Atg/Gtg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411540	63411540	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0067266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	96	546	0	ENST00000330258.3:c.1627G>T	p.Glu543Ter	p.E543*	ENST00000330258	NM_152424.3	543	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs867114783		P-0067269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	160	704	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117686893	117686893	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs115534545		P-0067269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	12	446	0	ENST00000368508.3:c.2824T>C	p.Phe942Leu	p.F942L	ENST00000368508	NM_002944.2	942	Ttt/Ctt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0067269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	128	626	0	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0067269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	60	379	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PARK2	5071	MSKCC	GRCh37	6	161781225	161781225	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1801334		P-0067269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	18	506	0	ENST00000366898.1:c.1180G>A	p.Asp394Asn	p.D394N	ENST00000366898	NM_004562.2	394	Gat/Aat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	-	rs121913425		P-0067319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	157	302	0	ENST00000275493.2:c.2237_2251del	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gca																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306960	65306960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	51	368	0	ENST00000342505.4:c.2617C>T	p.Arg873Cys	p.R873C	ENST00000342505	NM_002227.2	873	Cgc/Tgc																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186503754	186503754	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	54	383	0	ENST00000323963.5:c.431A>C	p.Glu144Ala	p.E144A	ENST00000323963		144	gAa/gCa																																																																															
RET	5979	MSKCC	GRCh37	10	43604629	43604629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	57	340	1	ENST00000355710.3:c.1214C>T	p.Pro405Leu	p.P405L	ENST00000355710	NM_020975.4	405	cCc/cTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0067325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	74	151	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0067325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	297	359	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0067325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	208	377	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7578238	7578255	+	inframe_deletion	In_Frame_Del	DEL	TCCACACGCAAATTTCCT	TCCACACGCAAATTTCCT	-			P-0067325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	283	331	0	ENST00000269305.4:c.594_611del	p.Gly199_Glu204del	p.G199_E204del	ENST00000269305	NM_001126112.2	198	gaAGGAAATTTGCGTGTGGAg/gag																																																																															
MYC	4609	MSKCC	GRCh37	8	128750945	128750945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	654	336	0	ENST00000377970.2:c.482C>T	p.Ser161Leu	p.S161L	ENST00000377970	NM_002467.4	161	tCa/tTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0067325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	167	206	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39241970	39241970	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	98	257	0	ENST00000402219.2:c.1876A>G	p.Thr626Ala	p.T626A	ENST00000402219	NM_005633.3	626	Aca/Gca																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411693	63411693	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	248	208	0	ENST00000330258.3:c.1474del	p.Arg492GlyfsTer49	p.R492Gfs*49	ENST00000330258	NM_152424.3	492	Agg/gg																																																																															
APC	324	MSKCC	GRCh37	5	112175787	112175788	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0067325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	201	316	1	ENST00000257430.4:c.4496_4497del	p.Gly1499ValfsTer14	p.G1499Vfs*14	ENST00000257430	NM_000038.5	1499	gGA/g																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920377	114920377	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0067325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	111	243	1	ENST00000543371.1:c.1319-1G>A		p.X440_splice	ENST00000543371	NM_001198531.1	440																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0067326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	130	284	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788642	3788642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	62	353	0	ENST00000262367.5:c.4312C>G	p.His1438Asp	p.H1438D	ENST00000262367	NM_004380.2	1438	Cat/Gat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057848	27057848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			872	129	544	0	ENST00000324856.7:c.1556C>T	p.Ser519Phe	p.S519F	ENST00000324856	NM_006015.4	519	tCc/tTc																																																																															
MDM4	4194	MSKCC	GRCh37	1	204506578	204506578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			742	43	391	0	ENST00000367182.3:c.364C>T	p.Leu122Phe	p.L122F	ENST00000367182	NM_001278516.1	122	Ctc/Ttc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0067347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			81	58	367	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175476	112175476	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	62	592	0	ENST00000257430.4:c.4188del	p.Phe1396LeufsTer19	p.F1396Lfs*19	ENST00000257430	NM_000038.5	1395	agT/ag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707779	176707779	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	90	613	0	ENST00000439151.2:c.5836A>G	p.Ile1946Val	p.I1946V	ENST00000439151	NM_022455.4	1946	Att/Gtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577564	7577565	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0067347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	156	508	0	ENST00000269305.4:c.716dup	p.Asn239LysfsTer25	p.N239Kfs*25	ENST00000269305	NM_001126112.2	239	aac/aaAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933622	39933622	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200141801		P-0067347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	173	717	0	ENST00000378444.4:c.977C>T	p.Pro326Leu	p.P326L	ENST00000378444	NM_001123385.1	326	cCg/cTg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971306	13971306	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs959752124		P-0067347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	302	596	0	ENST00000405192.2:c.623G>A	p.Arg208His	p.R208H	ENST00000405192	NM_001163147.1	208	cGt/cAt																																																																															
BIRC3	330	MSKCC	GRCh37	11	102196226	102196226	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	45	477	0	ENST00000263464.3:c.883T>G	p.Cys295Gly	p.C295G	ENST00000263464	NM_001165.4	295	Tgt/Ggt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18272267	18272268	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0067347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	138	515	0	ENST00000222254.8:c.779dup	p.Pro261AlafsTer14	p.P261Afs*14	ENST00000222254	NM_005027.3	259	-/C																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175859	24175859	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs797045989		P-0067347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	98	565	0	ENST00000263121.7:c.1087A>G	p.Lys363Glu	p.K363E	ENST00000263121	NM_003073.3	363	Aag/Gag																																																																															
CDK6	1021	MSKCC	GRCh37	7	92244459	92244459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	29	557	0	ENST00000265734.4:c.976G>T	p.Ala326Ser	p.A326S	ENST00000265734	NM_001259.6	326	Gcc/Tcc																																																																															
ATM	472	MSKCC	GRCh37	11	108106533	108106533	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	43	482	0	ENST00000278616.4:c.468G>C	p.Trp156Cys	p.W156C	ENST00000278616	NM_000051.3	156	tgG/tgC																																																																															
PGR	5241	MSKCC	GRCh37	11	100922234	100922235	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0067347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	38	474	0	ENST00000325455.5:c.2277_2278delinsTT	p.Met759_Val760delinsIleLeu	p.M759_V760delinsIL	ENST00000325455	NM_001202474.3	759	atGGtg/atTTtg																																																																															
RET	5979	MSKCC	GRCh37	10	43617452	43617452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	79	446	0	ENST00000355710.3:c.2789C>T	p.Thr930Met	p.T930M	ENST00000355710	NM_020975.4	930	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0067349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	118	525	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118371728	118371728	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	111	403	0	ENST00000534358.1:c.6185C>A	p.Thr2062Lys	p.T2062K	ENST00000534358	NM_005933.3	2062	aCa/aAa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89176400	89176400	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	42	383	0	ENST00000336596.2:c.130T>G	p.Trp44Gly	p.W44G	ENST00000336596	NM_005233.5	44	Tgg/Ggg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128305429	128305429	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	107	383	0	ENST00000265960.3:c.867C>G	p.Phe289Leu	p.F289L	ENST00000265960	NM_001006617.1	289	ttC/ttG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0067353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	62	525	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390649	139390650	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs763016003		P-0067353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	23	790	1	ENST00000277541.6:c.7541_7542del	p.Pro2514ArgfsTer4	p.P2514Rfs*4	ENST00000277541	NM_017617.3	2514	cCT/c																																																																															
DICER1	23405	MSKCC	GRCh37	14	95592924	95592924	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755944755		P-0067353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	41	402	0	ENST00000343455.3:c.896C>T	p.Ser299Leu	p.S299L	ENST00000343455	NM_177438.2	299	tCg/tTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040908	47040908	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0067353-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	82	787	0	ENST00000329236.7:c.1206del	p.Glu403ArgfsTer4	p.E403Rfs*4	ENST00000329236	NM_001204466.1	402	Ccc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066292-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			472	302	563	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044901	47044901	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0066292-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			1154	163	614	0	ENST00000329236.7:c.1993G>T	p.Glu665Ter	p.E665*	ENST00000329236	NM_001204466.1	665	Gag/Tag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858738	9858738	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149698593		P-0066292-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			770	73	524	0	ENST00000330684.3:c.2663C>T	p.Thr888Met	p.T888M	ENST00000330684	NM_001134407.1	888	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0066292-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			463	1221	315	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245434	153245434	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066292-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			402	205	455	0	ENST00000281708.4:c.1757G>T	p.Gly586Val	p.G586V	ENST00000281708	NM_033632.3	586	gGa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579374	7579375	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0066292-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			630	148	601	0	ENST00000269305.4:c.312_313delinsTA	p.Gln104_Gly105delinsHisSer	p.Q104_G105delinsHS	ENST00000269305	NM_001126112.2	104	caGGgc/caTAgc																																																																															
TERT	7015	MSKCC	GRCh37	5	1293432	1293432	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066292-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			499	151	430	0	ENST00000310581.5:c.1569C>A	p.Ser523Arg	p.S523R	ENST00000310581	NM_198253.2	523	agC/agA																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33434399	33434399	+	intron_variant	Intron	SNP	T	T	A			P-0066292-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			495	116	532	0	ENST00000335858.7:c.145-899A>T		p.*49*	ENST00000335858	NM_133629.2																																																																																	
ARID2	196528	MSKCC	GRCh37	12	46242663	46242663	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066292-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			333	168	392	0	ENST00000334344.6:c.1625G>C	p.Arg542Pro	p.R542P	ENST00000334344	NM_152641.2	542	cGa/cCa																																																																															
MSI1	4440	MSKCC	GRCh37	12	120784059	120784059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066292-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			626	140	619	1	ENST00000257552.2:c.926G>T	p.Gly309Val	p.G309V	ENST00000257552	NM_002442.3	309	gGg/gTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660535	227660535	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066292-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			498	221	590	0	ENST00000305123.5:c.2920A>G	p.Ser974Gly	p.S974G	ENST00000305123	NM_005544.2	974	Agc/Ggc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1331523	1331523	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066292-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			606	66	428	0	ENST00000381566.1:c.5G>T	p.Gly2Val	p.G2V	ENST00000381566		2	gGg/gTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2951867	2951867	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066292-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			669	135	551	0	ENST00000396946.4:c.3083A>T	p.Glu1028Val	p.E1028V	ENST00000396946	NM_032415.4	1028	gAg/gTg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63661961	63661961	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066292-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			487	85	552	0	ENST00000279873.7:c.65A>G	p.Tyr22Cys	p.Y22C	ENST00000279873	NM_032199.2	22	tAc/tGc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068299	30068299	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066292-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			548	46	358	0	ENST00000331968.5:c.2100A>T	p.Lys700Asn	p.K700N	ENST00000331968	NM_002742.2	700	aaA/aaT																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068916	30068916	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066292-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			627	116	414	0	ENST00000331968.5:c.2013G>T	p.Leu671Phe	p.L671F	ENST00000331968	NM_002742.2	671	ttG/ttT																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514859	103514859	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066292-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			473	393	581	0	ENST00000355739.4:c.1360G>T	p.Ala454Ser	p.A454S	ENST00000355739	NM_000123.3	454	Gca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0067009-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			16	37	375	16	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827951	40827951	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067009-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	28	440	13	ENST00000373198.4:c.2477C>G	p.Pro826Arg	p.P826R	ENST00000373198	NM_133170.3	826	cCc/cGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878233	151878233	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0067009-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			27	13	454	7	ENST00000262189.6:c.6712A>C	p.Met2238Leu	p.M2238L	ENST00000262189	NM_170606.2	2238	Atg/Ctg																																																																															
ALB	213	MSKCC	GRCh37	4	74274486	74274486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067009-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			57	10	390	3	ENST00000295897.4:c.446C>A	p.Thr149Asn	p.T149N	ENST00000295897	NM_000477.5	149	aCt/aAt																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs869320707		P-0067013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	84	597	0	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121912666		P-0067013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	52	670	0	ENST00000269305.4:c.659A>C	p.Tyr220Ser	p.Y220S	ENST00000269305	NM_001126112.2	220	tAt/tCt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876343	35876343	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200570812		P-0067013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	52	568	0	ENST00000303115.3:c.1135G>A	p.Ala379Thr	p.A379T	ENST00000303115	NM_002185.3	379	Gcc/Acc																																																																															
TP63	8626	MSKCC	GRCh37	3	189586449	189586449	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	61	502	0	ENST00000264731.3:c.1073G>T	p.Ser358Ile	p.S358I	ENST00000264731	NM_003722.4	358	aGc/aTc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3830796	3830796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	47	550	0	ENST00000262367.5:c.1760G>T	p.Gly587Val	p.G587V	ENST00000262367	NM_004380.2	587	gGt/gTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045493	47045494	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0067013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	44	606	0	ENST00000329236.7:c.2226_2227del	p.Arg743GlnfsTer38	p.R743Qfs*38	ENST00000329236	NM_001204466.1	742	gaACgc/gagc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89462388	89462388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	64	466	0	ENST00000336596.2:c.1860C>G	p.Asn620Lys	p.N620K	ENST00000336596	NM_005233.5	620	aaC/aaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0067015-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	59	443	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221785	55221786	+	missense_variant	Missense_Mutation	DNP	AT	AT	GA			P-0067015-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	305	612	0	ENST00000275493.2:c.829_830delinsGA	p.Met277Glu	p.M277E	ENST00000275493	NM_005228.3	277	ATg/GAg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435278	18435278	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0067015-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	89	536	0	ENST00000266497.5:c.263A>G	p.Glu88Gly	p.E88G	ENST00000266497		88	gAa/gGa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123693	11123693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067015-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	16	512	0	ENST00000344626.4:c.2343G>T	p.Met781Ile	p.M781I	ENST00000344626	NM_003072.3	781	atG/atT																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936820	150936820	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067015-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	285	517	0	ENST00000271640.5:c.3856T>C	p.Cys1286Arg	p.C1286R	ENST00000271640	NM_001145415.1	1286	Tgc/Cgc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47058718	47058718	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067015-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	271	493	0	ENST00000409792.3:c.7560G>T	p.Glu2520Asp	p.E2520D	ENST00000409792	NM_014159.6	2520	gaG/gaT																																																																															
STK11	6794	MSKCC	GRCh37	19	1221995	1221995	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201090		P-0067016-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	19	358	0	ENST00000326873.7:c.910C>T	p.Arg304Trp	p.R304W	ENST00000326873	NM_000455.4	304	Cgg/Tgg																																																																															
TP63	8626	MSKCC	GRCh37	3	189582134	189582135	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0067016-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	31	634	0	ENST00000264731.3:c.699dup	p.Ala234SerfsTer2	p.A234Sfs*2	ENST00000264731	NM_003722.4	231	-/A																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732993	30732993	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0067016-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	36	516	0	ENST00000359013.4:c.1681G>T	p.Glu561Ter	p.E561*	ENST00000359013	NM_001024847.2	561	Gaa/Taa																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045928	26045928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067016-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	33	656	0	ENST00000540144.1:c.290G>T	p.Cys97Phe	p.C97F	ENST00000540144	NM_003531.2	97	tGt/tTt																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46608822	46608822	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067016-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	28	499	0	ENST00000263734.3:c.2133G>T	p.Gln711His	p.Q711H	ENST00000263734	NM_001430.4	711	caG/caT																																																																															
TET2	54790	MSKCC	GRCh37	4	106182959	106182959	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0067016-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	11	299	0	ENST00000380013.4:c.3998T>A	p.Met1333Lys	p.M1333K	ENST00000380013	NM_001127208.2	1333	aTg/aAg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576277	88576277	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0067016-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	39	482	0	ENST00000360948.2:c.1397-1G>T		p.X466_splice	ENST00000360948	NM_001012338.2	466																																																																																
TP53	7157	MSKCC	GRCh37	17	7578400	7578400	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs751477326		P-0067017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	86	625	0	ENST00000269305.4:c.530C>G	p.Pro177Arg	p.P177R	ENST00000269305	NM_001126112.2	177	cCc/cGc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974676	21974676	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0067017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	117	551	0	ENST00000304494.5:c.150+1G>A		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																																
CSDE1	7812	MSKCC	GRCh37	1	115262259	115262259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	36	425	0	ENST00000438362.2:c.2295C>A	p.Phe765Leu	p.F765L	ENST00000438362	NM_001242891.1	765	ttC/ttA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0067017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	36	321	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EP300	2033	MSKCC	GRCh37	22	41573845	41573845	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			786	46	656	0	ENST00000263253.7:c.6130G>C	p.Gly2044Arg	p.G2044R	ENST00000263253	NM_001429.3	2044	Ggc/Cgc																																																																															
EP300	2033	MSKCC	GRCh37	22	41572998	41572998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			859	73	691	0	ENST00000263253.7:c.5283G>A	p.Met1761Ile	p.M1761I	ENST00000263253	NM_001429.3	1761	atG/atA																																																																															
EP300	2033	MSKCC	GRCh37	22	41573711	41573711	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			791	66	694	0	ENST00000263253.7:c.5996G>T	p.Gly1999Val	p.G1999V	ENST00000263253	NM_001429.3	1999	gGa/gTa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864863	117864864	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0067017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	54	447	0	ENST00000297338.2:c.1245dup	p.Phe416IlefsTer6	p.F416Ifs*6	ENST00000297338	NM_006265.2	415	-/A																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972951	25972963	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGCTCCAAGAG	TCTGCTCCAAGAG	-			P-0067017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	60	565	0	ENST00000435504.4:c.1462_1474del	p.Leu488SerfsTer30	p.L488Sfs*30	ENST00000435504		488	CTCTTGGAGCAGAag/ag																																																																															
EP300	2033	MSKCC	GRCh37	22	41572860	41572860	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067017-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	58	576	0	ENST00000263253.7:c.5145G>C	p.Glu1715Asp	p.E1715D	ENST00000263253	NM_001429.3	1715	gaG/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs764146326		P-0049651-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			600	44	418	0	ENST00000269305.4:c.841G>T	p.Asp281Tyr	p.D281Y	ENST00000269305	NM_001126112.2	281	Gac/Tac																																																																															
MET	4233	MSKCC	GRCh37	7	116423407	116423407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913671		P-0049651-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			479	43	303	0	ENST00000397752.3:c.3682G>C	p.Asp1228His	p.D1228H	ENST00000397752	NM_000245.2	1228	Gac/Cac																																																																															
MET	4233	MSKCC	GRCh37	7	116411891	116411924	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCTGTTTTAAGATCTGGGCAGTGAATTAGTTCG	CTCTGTTTTAAGATCTGGGCAGTGAATTAGTTCG	-			P-0049651-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			645	126	476	0	ENST00000397752.3:c.2888-10_2911del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
CSF1R	1436	MSKCC	GRCh37	5	149459840	149459840	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049651-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			618	40	366	0	ENST00000286301.3:c.367G>T	p.Ala123Ser	p.A123S	ENST00000286301	NM_005211.3	123	Gca/Tca																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472607	88472607	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049651-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			576	17	0	0	ENST00000360948.2:c.1948G>T	p.Glu650Ter	p.E650*	ENST00000360948	NM_001012338.2	650	Gag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0055427-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			579	188	475	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0055427-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			539	108	518	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
CIC	23152	MSKCC	GRCh37	19	42793159	42793159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055427-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			696	65	534	0	ENST00000575354.2:c.1051C>T	p.Arg351Trp	p.R351W	ENST00000575354	NM_015125.3	351	Cgg/Tgg																																																																															
TERT	7015	MSKCC	GRCh37	5	1282578	1282578	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055427-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			477	75	410	0	ENST00000310581.5:c.1735A>G	p.Ser579Gly	p.S579G	ENST00000310581	NM_198253.2	579	Agt/Ggt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740872	58740872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055427-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			477	52	428	0	ENST00000305921.3:c.1777C>T	p.Pro593Ser	p.P593S	ENST00000305921	NM_003620.3	593	Cct/Tct																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499508	89499508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055427-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			357	71	485	0	ENST00000336596.2:c.2678G>T	p.Ser893Ile	p.S893I	ENST00000336596	NM_005233.5	893	aGt/aTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045627	47045657	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACCACTCATGCTGTGCACCGCCCCTGCAGA	GACCACTCATGCTGTGCACCGCCCCTGCAGA	-			P-0055427-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			518	90	506	0	ENST00000329236.7:c.2304-27_2307del		p.X768_splice	ENST00000329236	NM_001204466.1	768																																																																																
TP63	8626	MSKCC	GRCh37	3	189612085	189612085	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055427-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			475	117	519	0	ENST00000264731.3:c.1837C>G	p.Pro613Ala	p.P613A	ENST00000264731	NM_003722.4	613	Cct/Gct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0065339-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			226	29	279	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
EED	8726	MSKCC	GRCh37	11	85963189	85963189	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0066595-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			182	17	207	0	ENST00000263360.6:c.268-1G>A		p.X90_splice	ENST00000263360	NM_003797.3	90																																																																																
RUNX1	861	MSKCC	GRCh37	21	36252865	36252865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066595-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			399	34	281	0	ENST00000300305.3:c.497G>T	p.Arg166Leu	p.R166L	ENST00000300305		166	cGa/cTa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0066595-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			395	44	308	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374308	138374308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066595-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			574	57	348	0	ENST00000289153.2:c.3136G>A	p.Asp1046Asn	p.D1046N	ENST00000289153	NM_006219.2	1046	Gat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0066595-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			170	56	207	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230468590	230468590	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0066595-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			503	56	418	0	ENST00000525115.1:c.1066G>T	p.Gly356Ter	p.G356*	ENST00000525115		356	Gga/Tga																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67196471	67196471	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066595-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			421	52	309	0	ENST00000312629.5:c.97G>C	p.Glu33Gln	p.E33Q	ENST00000312629	NM_003952.2	33	Gag/Cag																																																																															
BIRC3	330	MSKCC	GRCh37	11	102207738	102207738	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066595-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			329	24	345	0	ENST00000263464.3:c.1720C>T	p.His574Tyr	p.H574Y	ENST00000263464	NM_001165.4	574	Cat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913535		P-0066595-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			356	43	260	0	ENST00000256078.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000256078	NM_033360.2	13	Ggc/Cgc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643378	38643378	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066595-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	72	343	0	ENST00000299084.4:c.848C>G	p.Ser283Cys	p.S283C	ENST00000299084	NM_152594.2	283	tCt/tGt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89880961	89880961	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066595-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			395	27	334	0	ENST00000389301.3:c.250G>C	p.Glu84Gln	p.E84Q	ENST00000389301	NM_000135.2	84	Gag/Cag																																																																															
TET2	54790	MSKCC	GRCh37	4	106158322	106158322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066595-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			451	56	373	0	ENST00000380013.4:c.3223G>A	p.Asp1075Asn	p.D1075N	ENST00000380013	NM_001127208.2	1075	Gat/Aat																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637847	176637847	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066595-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	53	318	0	ENST00000439151.2:c.2447C>G	p.Ser816Cys	p.S816C	ENST00000439151	NM_022455.4	816	tCt/tGt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001128	150001128	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066595-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			350	51	335	0	ENST00000253339.5:c.2476C>G	p.His826Asp	p.H826D	ENST00000253339		826	Cat/Gat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874698	151874698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066595-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			496	71	427	1	ENST00000262189.6:c.7840G>T	p.Gly2614Cys	p.G2614C	ENST00000262189	NM_170606.2	2614	Ggt/Tgt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70967609	70967609	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066595-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	48	320	0	ENST00000276594.2:c.1414C>G	p.Gln472Glu	p.Q472E	ENST00000276594	NM_024504.3	472	Caa/Gaa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207077	1207077	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	90	466	0	ENST00000326873.7:c.169del	p.Glu57LysfsTer7	p.E57Kfs*7	ENST00000326873	NM_000455.4	55	ctG/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	94	474	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355347	15355347	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767979123		P-0067042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	49	260	0	ENST00000263377.2:c.2276C>T	p.Pro759Leu	p.P759L	ENST00000263377	NM_058243.2	759	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0067042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			50	25	321	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31393208	31393208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	48	352	0	ENST00000328111.2:c.2296G>A	p.Ala766Thr	p.A766T	ENST00000328111	NM_006892.3	766	Gcc/Acc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370811	55370811	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	67	421	0	ENST00000297316.4:c.113C>A	p.Pro38His	p.P38H	ENST00000297316	NM_022454.3	38	cCc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42005579	42005580	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	AT			P-0067042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			107	27	513	0	ENST00000219905.7:c.3315_3316delinsAT	p.His1105_Arg1106delinsGlnTer	p.H1105_R1106delinsQ*	ENST00000219905	NM_001164273.1	1105	caTCga/caATga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2974145	2974145	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	50	392	0	ENST00000396946.4:c.1460G>T	p.Ser487Ile	p.S487I	ENST00000396946	NM_032415.4	487	aGc/aTc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114176	115114176	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	63	445	0	ENST00000257566.3:c.1041C>A	p.Asn347Lys	p.N347K	ENST00000257566	NM_016569.3	347	aaC/aaA																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600044	10600046	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	CCT	CCT	AA			P-0067042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	84	392	0	ENST00000171111.5:c.1532-2_1532delinsTT		p.X511_splice	ENST00000171111	NM_203500.1	511																																																																																
BARD1	580	MSKCC	GRCh37	2	215593689	215593689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	78	374	0	ENST00000260947.4:c.2045C>T	p.Thr682Ile	p.T682I	ENST00000260947	NM_000465.2	682	aCc/aTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0067043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	10	205	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242486	+	inframe_deletion	In_Frame_Del	DEL	TTAAGAGAAGCAACATCT	TTAAGAGAAGCAACATCT	-	rs121913440		P-0067043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	100	309	0	ENST00000275493.2:c.2239_2256del	p.Leu747_Ser752del	p.L747_S752del	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAACATCT/-																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878254	151878254	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	68	431	0	ENST00000262189.6:c.6691G>C	p.Glu2231Gln	p.E2231Q	ENST00000262189	NM_170606.2	2231	Gag/Cag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245624	46245624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	72	472	0	ENST00000334344.6:c.3718G>A	p.Asp1240Asn	p.D1240N	ENST00000334344	NM_152641.2	1240	Gat/Aat																																																																															
B2M	567	MSKCC	GRCh37	15	45007672	45007672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	92	370	0	ENST00000558401.1:c.119C>T	p.Ser40Leu	p.S40L	ENST00000558401	NM_004048.2	40	tCa/tTa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868654	56868654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0067043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	31	271	0	ENST00000308159.5:c.1746G>A	p.Met582Ile	p.M582I	ENST00000308159	NM_014669.4	582	atG/atA																																																																															
EZH1	2145	MSKCC	GRCh37	17	40865287	40865287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0067043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	65	340	0	ENST00000428826.2:c.1144G>A	p.Glu382Lys	p.E382K	ENST00000428826		382	Gag/Aag																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424731	47424731	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	71	444	0	ENST00000404338.3:c.2799C>G	p.Ile933Met	p.I933M	ENST00000404338	NM_004491.4	933	atC/atG																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564369	86564369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0067043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	67	434	0	ENST00000274376.6:c.101G>C	p.Cys34Ser	p.C34S	ENST00000274376	NM_002890.2	34	tGt/tCt																																																																															
CD274	29126	MSKCC	GRCh37	9	5463108	5463108	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	71	356	0	ENST00000381577.3:c.669A>C	p.Glu223Asp	p.E223D	ENST00000381577	NM_014143.3	223	gaA/gaC																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38963117	38963117	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0067047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	164	356	0	ENST00000357387.3:c.1427T>G	p.Leu476Ter	p.L476*	ENST00000357387	NM_152756.3	476	tTa/tGa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161938	47161939	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0067047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	127	408	0	ENST00000409792.3:c.4187dup	p.Asn1396LysfsTer2	p.N1396Kfs*2	ENST00000409792	NM_014159.6	1396	aat/aaAt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53224161	53224162	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0067047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	82	446	0	ENST00000375401.3:c.3389_3390del	p.Thr1130ArgfsTer73	p.T1130Rfs*73	ENST00000375401	NM_004187.3	1130	aCA/a																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038726	47038726	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	99	470	0	ENST00000329236.7:c.502C>T	p.Gln168Ter	p.Q168*	ENST00000329236	NM_001204466.1	168	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259516	+	missense_variant	Missense_Mutation	DNP	TG	TG	GT	rs1057519848		P-0067067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	168	390	0	ENST00000275493.2:c.2573_2574delinsGT	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTG/cGT																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939417	71939417	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142516692		P-0067067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	34	616	2	ENST00000298229.2:c.272G>A	p.Arg91His	p.R91H	ENST00000298229	NM_001567.3	91	cGc/cAc																																																																															
TRIP13	9319	MSKCC	GRCh37	5	896889	896889	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			842	59	494	0	ENST00000166345.3:c.368A>T	p.Asn123Ile	p.N123I	ENST00000166345	NM_004237.3	123	aAt/aTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0067068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	194	405	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0067068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	226	446	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100943	27100943	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	43	476	0	ENST00000324856.7:c.4225C>T	p.Gln1409Ter	p.Q1409*	ENST00000324856	NM_006015.4	1409	Cag/Tag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25468920	25468920	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0067068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	54	325	0	ENST00000264709.3:c.1443C>A	p.Tyr481Ter	p.Y481*	ENST00000264709	NM_175629.2	481	taC/taA																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337695	73337695	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0067068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	52	169	0	ENST00000377767.4:c.2021T>A	p.Val674Asp	p.V674D	ENST00000377767	NM_014953.3	674	gTt/gAt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117831	70117831	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0067068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	159	457	0	ENST00000245479.2:c.299A>C	p.Lys100Thr	p.K100T	ENST00000245479	NM_000346.3	100	aAg/aCg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361215	66361215	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0067068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	51	396	0	ENST00000273854.3:c.957C>A	p.Cys319Ter	p.C319*	ENST00000273854	NM_004439.5	319	tgC/tgA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584552	48584552	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0067069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	327	514	0	ENST00000342988.3:c.725C>G	p.Ser242Ter	p.S242*	ENST00000342988	NM_005359.5	242	tCa/tGa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0066910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	75	451	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106586	27106586	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	91	502	0	ENST00000324856.7:c.6197A>T	p.Asn2066Ile	p.N2066I	ENST00000324856	NM_006015.4	2066	aAc/aTc																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944872	31944872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	33	258	0	ENST00000340398.3:c.229G>A	p.Asp77Asn	p.D77N	ENST00000340398	NM_001013699.2	77	Gat/Aat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830778	72830778	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	52	401	0	ENST00000268489.5:c.5803C>A	p.Arg1935Ser	p.R1935S	ENST00000268489	NM_006885.3	1935	Cgc/Agc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993717	72993717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	10	499	0	ENST00000268489.5:c.328G>A	p.Glu110Lys	p.E110K	ENST00000268489	NM_006885.3	110	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	132	384	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47035932	47035932	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	97	306	0	ENST00000329236.7:c.379A>G	p.Met127Val	p.M127V	ENST00000329236	NM_001204466.1	127	Atg/Gtg																																																																															
ATRX	546	MSKCC	GRCh37	X	76855991	76855992	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	TA			P-0066918-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	46	261	0	ENST00000373344.5:c.5608_5609delinsTA	p.Ala1870Ter	p.A1870*	ENST00000373344	NM_000489.3	1870	GCa/TAa																																																																															
SMO	6608	MSKCC	GRCh37	7	128848687	128848687	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1204546630		P-0066991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	319	490	0	ENST00000249373.3:c.1352G>A	p.Arg451His	p.R451H	ENST00000249373	NM_005631.4	451	cGc/cAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114917785	114917785	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066991-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	63	492	0	ENST00000543371.1:c.1275G>C	p.Lys425Asn	p.K425N	ENST00000543371	NM_001198531.1	425	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	55	635	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0066937-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	149	383	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0066937-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	89	298	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916923	178916923	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066937-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	16	345	0	ENST00000263967.3:c.310C>G	p.Pro104Ala	p.P104A	ENST00000263967	NM_006218.2	104	Cca/Gca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066937-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	109	276	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44913113	44913114	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0066937-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	107	304	0	ENST00000377967.4:c.790_791dup	p.Lys265ProfsTer61	p.K265Pfs*61	ENST00000377967	NM_021140.2	263	gcc/gcCAc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30321697	30321697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	97	351	0	ENST00000322652.5:c.1552G>A	p.Gly518Arg	p.G518R	ENST00000322652	NM_015355.2	518	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0066942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	136	464	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479810	67479810	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863223746		P-0066942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	282	383	0	ENST00000327367.4:c.1117C>T	p.Arg373Cys	p.R373C	ENST00000327367	NM_005902.3	373	Cgc/Tgc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174395	11174395	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	116	334	0	ENST00000361445.4:c.7280T>G	p.Leu2427Arg	p.L2427R	ENST00000361445	NM_004958.3	2427	cTg/cGg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	155	214	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374882	45374882	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs776149698		P-0066942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	136	404	0	ENST00000262160.6:c.961C>T	p.Arg321Ter	p.R321*	ENST00000262160	NM_005901.5	321	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593520	48593520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	147	342	0	ENST00000342988.3:c.1271A>T	p.Asp424Val	p.D424V	ENST00000342988	NM_005359.5	424	gAt/gTt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956574	93956574	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	134	413	0	ENST00000369303.4:c.2662G>T	p.Gly888Ter	p.G888*	ENST00000369303	NM_004440.3	888	Gga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0066942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	179	293	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2086876	2086876	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	157	501	0	ENST00000349721.2:c.2574T>G	p.Asn858Lys	p.N858K	ENST00000349721	NM_003070.3	858	aaT/aaG																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919803	96919803	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	164	408	0	ENST00000258439.3:c.460A>G	p.Ile154Val	p.I154V	ENST00000258439	NM_001193304.2	154	Atc/Gtc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604781	48604785	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCT	CTCCT	-			P-0066942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	156	381	0	ENST00000342988.3:c.1603_1607del	p.Leu535ArgfsTer40	p.L535Rfs*40	ENST00000342988	NM_005359.5	535	CTCCTa/a																																																																															
CBFB	865	MSKCC	GRCh37	16	67132644	67132644	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	112	351	0	ENST00000412916.2:c.527C>A	p.Ser176Tyr	p.S176Y	ENST00000412916		176	tCc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112174210	112174210	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0066942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	126	495	0	ENST00000257430.4:c.2919T>A	p.Tyr973Ter	p.Y973*	ENST00000257430	NM_000038.5	973	taT/taA																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78936338	78936338	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1212387005		P-0066943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	191	541	0	ENST00000306801.3:c.3770C>T	p.Thr1257Met	p.T1257M	ENST00000306801	NM_020761.2	1257	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs786201838		P-0066943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	198	652	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265479	152265479	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766779326		P-0066943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	193	487	0	ENST00000206249.3:c.932C>T	p.Thr311Met	p.T311M	ENST00000206249	NM_000125.3	311	aCg/aTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591846	48591846	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0066943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	177	592	0	ENST00000342988.3:c.1009G>T	p.Glu337Ter	p.E337*	ENST00000342988	NM_005359.5	337	Gag/Tag																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742485	17742485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	152	431	1	ENST00000250003.3:c.667C>T	p.Arg223Trp	p.R223W	ENST00000250003	NM_002478.4	223	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0066943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	142	285	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971102	21971104	+	missense_variant	Missense_Mutation	ONP	CAG	CAG	GAA			P-0066943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	168	448	0	ENST00000304494.5:c.254_256delinsTTC	p.Ala85_Ala86delinsValPro	p.A85_A86delinsVP	ENST00000304494	NM_000077.4	85	gCTGcc/gTTCcc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602763	10602763	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs774469695		P-0042066-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			252	88	489	0	ENST00000171111.5:c.815G>T	p.Arg272Leu	p.R272L	ENST00000171111	NM_203500.1	272	cGc/cTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041247	47041247	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042066-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			141	88	233	0	ENST00000329236.7:c.1441G>T	p.Glu481Ter	p.E481*	ENST00000329236	NM_001204466.1	481	Gaa/Taa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155254	55155254	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042066-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			307	37	380	0	ENST00000257290.5:c.2853G>C	p.Glu951Asp	p.E951D	ENST00000257290	NM_006206.4	951	gaG/gaC																																																																															
STK11	6794	MSKCC	GRCh37	19	1223059	1223060	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0042066-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			279	88	423	0	ENST00000326873.7:c.998_999del	p.Arg333GlnfsTer26	p.R333Qfs*26	ENST00000326873	NM_000455.4	332	tgGCgc/tggc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41215969	41215969	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1800747		P-0042066-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			243	70	259	0	ENST00000357654.3:c.5075-1G>A		p.X1692_splice	ENST00000357654	NM_007294.3	1692																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89499364	89499364	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs572288873		P-0042066-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			435	51	386	0	ENST00000336596.2:c.2534C>A	p.Pro845His	p.P845H	ENST00000336596	NM_005233.5	845	cCc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42050003	42050003	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042066-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			216	41	173	0	ENST00000219905.7:c.7157C>G	p.Ser2386Cys	p.S2386C	ENST00000219905	NM_001164273.1	2386	tCt/tGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29556461	29556461	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042066-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			351	75	261	0	ENST00000358273.4:c.2828A>C	p.Lys943Thr	p.K943T	ENST00000358273	NM_001042492.2	943	aAg/aCg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67201912	67201912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042066-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			344	51	444	0	ENST00000312629.5:c.1112C>T	p.Pro371Leu	p.P371L	ENST00000312629	NM_003952.2	371	cCt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs770776262		P-0063246-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			424	289	575	5	ENST00000269305.4:c.321C>A	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578412	7578412	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519747		P-0063246-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			599	143	567	3	ENST00000269305.4:c.518T>C	p.Val173Ala	p.V173A	ENST00000269305	NM_001126112.2	173	gTg/gCg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0063246-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	968	407	3	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat																																																																															
RB1	5925	MSKCC	GRCh37	13	48951082	48951082	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0063246-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			131	272	274	4	ENST00000267163.4:c.1244del	p.Ile415AsnfsTer2	p.I415Nfs*2	ENST00000267163	NM_000321.2	415	aTa/aa																																																																															
POLE	5426	MSKCC	GRCh37	12	133244192	133244192	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0063246-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			516	142	493	0	ENST00000320574.5:c.2216T>A	p.Val739Glu	p.V739E	ENST00000320574	NM_006231.2	739	gTg/gAg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911664	134911664	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0063246-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	137	441	0	ENST00000398015.3:c.2129G>T	p.Arg710Met	p.R710M	ENST00000398015	NM_004441.4	710	aGg/aTg																																																																															
YAP1	10413	MSKCC	GRCh37	11	102100562	102100562	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0063246-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			593	106	487	0	ENST00000282441.5:c.1406A>C	p.Glu469Ala	p.E469A	ENST00000282441	NM_001130145.2	469	gAg/gCg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416656	121416656	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063246-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			458	105	381	2	ENST00000257555.6:c.85G>T	p.Ala29Ser	p.A29S	ENST00000257555		29	Gca/Tca																																																																															
LYN	4067	MSKCC	GRCh37	8	56922615	56922615	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063246-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			572	34	450	0	ENST00000519728.1:c.1485C>G	p.Ser495Arg	p.S495R	ENST00000519728	NM_002350.3	495	agC/agG																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118348696	118348696	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063246-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			538	103	392	0	ENST00000534358.1:c.3349G>T	p.Ala1117Ser	p.A1117S	ENST00000534358	NM_005933.3	1117	Gct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0065926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	37	179	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220433	1220433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	108	349	0	ENST00000326873.7:c.526G>T	p.Asp176Tyr	p.D176Y	ENST00000326873	NM_000455.4	176	Gac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112177234	112177234	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	40	346	0	ENST00000257430.4:c.5943del	p.Asn1981LysfsTer63	p.N1981Kfs*63	ENST00000257430	NM_000038.5	1981	aaT/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653843	89653904	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAACAATATTGATGATGTAGTAAGGTAAGAATGCTTTGATTTTCTATTTCAAATATTGATGT	GAACAATATTGATGATGTAGTAAGGTAAGAATGCTTTGATTTTCTATTTCAAATATTGATGT	-			P-0066380-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			154	13	339	0	ENST00000371953.3:c.141_164+38del		p.X47_splice	ENST00000371953	NM_000314.4	47																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0066409-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			193	163	351	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61725918	61725918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066409-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			503	81	343	0	ENST00000401558.2:c.649C>G	p.Gln217Glu	p.Q217E	ENST00000401558	NM_003400.3	217	Caa/Gaa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0066409-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			102	79	251	0	ENST00000329236.7:c.1459+1G>T		p.X487_splice	ENST00000329236	NM_001204466.1	487																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971133	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066409-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			193	154	460	0	ENST00000304494.5:c.225del	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	75	ccC/cc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9525066	9525066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066409-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			396	58	411	0	ENST00000353224.5:c.1819C>T	p.Pro607Ser	p.P607S	ENST00000353224	NM_177990.2	607	Ccc/Tcc																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439564	51439564	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0066409-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			266	149	299	0	ENST00000262662.1:c.130-1G>T		p.X44_splice	ENST00000262662		44																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398286	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0066409-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			312	348	271	0	ENST00000256078.4:c.33_34delinsCT	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	11	gcTGgt/gcCTgt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911540	101911540	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066409-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	53	323	0	ENST00000374994.4:c.1465A>C	p.Lys489Gln	p.K489Q	ENST00000374994	NM_004612.2	489	Aag/Cag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530121	212530121	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066409-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			469	83	393	0	ENST00000342788.4:c.1798G>C	p.Ala600Pro	p.A600P	ENST00000342788	NM_005235.2	600	Gca/Cca																																																																															
TP63	8626	MSKCC	GRCh37	3	189590658	189590658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751698974		P-0066409-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			352	67	354	0	ENST00000264731.3:c.1223G>A	p.Arg408His	p.R408H	ENST00000264731	NM_003722.4	408	cGt/cAt																																																																															
TET1	80312	MSKCC	GRCh37	10	70332369	70332369	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066409-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			235	32	325	0	ENST00000373644.4:c.274C>T	p.Gln92Ter	p.Q92*	ENST00000373644	NM_030625.2	92	Cag/Tag																																																																															
NUP93	9688	MSKCC	GRCh37	16	56792532	56792532	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0066409-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	63	342	0	ENST00000308159.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000308159	NM_014669.4	88	Gag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261046	16261046	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066409-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			332	93	469	0	ENST00000375759.3:c.8311A>G	p.Thr2771Ala	p.T2771A	ENST00000375759	NM_015001.2	2771	Aca/Gca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446848	49446848	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066409-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			466	294	459	0	ENST00000301067.7:c.962G>T	p.Arg321Leu	p.R321L	ENST00000301067	NM_003482.3	321	cGg/cTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55955577	55955577	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs374457339		P-0066409-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			314	141	319	0	ENST00000263923.4:c.3368C>A	p.Thr1123Asn	p.T1123N	ENST00000263923	NM_002253.2	1123	aCt/aAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980876	40980876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066409-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			315	65	336	0	ENST00000373198.4:c.1610G>T	p.Ser537Ile	p.S537I	ENST00000373198	NM_133170.3	537	aGc/aTc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81934361	81934361	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066409-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			302	65	326	0	ENST00000359376.3:c.1338G>C	p.Gln446His	p.Q446H	ENST00000359376	NM_002661.3	446	caG/caC																																																																															
ERF	2077	MSKCC	GRCh37	19	42753695	42753695	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066409-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			425	216	461	0	ENST00000222329.4:c.569G>T	p.Ser190Ile	p.S190I	ENST00000222329	NM_006494.2	190	aGt/aTt																																																																															
NBN	4683	MSKCC	GRCh37	8	90965858	90965858	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066409-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			184	146	311	0	ENST00000265433.3:c.1459T>A	p.Cys487Ser	p.C487S	ENST00000265433	NM_002485.4	487	Tgt/Agt																																																																															
POT1	25913	MSKCC	GRCh37	7	124532377	124532377	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066409-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			231	369	327	0	ENST00000357628.3:c.67G>T	p.Val23Phe	p.V23F	ENST00000357628	NM_015450.2	23	Gtc/Ttc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0066573-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			461	10	410	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023295	27023295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	92	415	1	ENST00000324856.7:c.401C>T	p.Ala134Val	p.A134V	ENST00000324856	NM_006015.4	134	gCg/gTg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115272979	115272979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	19	448	0	ENST00000438362.2:c.1394C>T	p.Ser465Leu	p.S465L	ENST00000438362	NM_001242891.1	465	tCa/tTa																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206653395	206653395	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374485120		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	60	499	1	ENST00000367120.3:c.1279C>T	p.Arg427Trp	p.R427W	ENST00000367120	NM_014002.3	427	Cgg/Tgg																																																																															
CBL	867	MSKCC	GRCh37	11	119149355	119149356	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATG	rs1358339544		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	102	465	1	ENST00000264033.4:c.1380_1382dup	p.Asp460dup	p.D460dup	ENST00000264033	NM_005188.3	460	tat/tATGat																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123712	46123712	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	128	445	0	ENST00000334344.6:c.92+1G>A		p.X31_splice	ENST00000334344	NM_152641.2	31																																																																																
ARID2	196528	MSKCC	GRCh37	12	46244967	46244967	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	227	542	0	ENST00000334344.6:c.3065del	p.Pro1022HisfsTer38	p.P1022Hfs*38	ENST00000334344	NM_152641.2	1021	Ccc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433806	49433806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			816	53	639	0	ENST00000301067.7:c.7747G>A	p.Ala2583Thr	p.A2583T	ENST00000301067	NM_003482.3	2583	Gcc/Acc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			849	73	671	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	40	484	1	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444091	49444091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1053550290		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	54	545	0	ENST00000301067.7:c.3280C>T	p.Leu1094Phe	p.L1094F	ENST00000301067	NM_003482.3	1094	Ctc/Ttc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856545	111856545	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1157707616		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	251	514	2	ENST00000341259.2:c.596C>T	p.Ala199Val	p.A199V	ENST00000341259	NM_005475.2	199	gCg/gTg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885901	111885901	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			830	53	552	2	ENST00000341259.2:c.1527del	p.Leu510SerfsTer38	p.L510Sfs*38	ENST00000341259	NM_005475.2	508	cGg/cg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115111984	115111984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			773	53	512	0	ENST00000257566.3:c.1756G>A	p.Val586Ile	p.V586I	ENST00000257566	NM_016569.3	586	Gtc/Atc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426748	121426748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			819	99	567	0	ENST00000257555.6:c.439C>T	p.His147Tyr	p.H147Y	ENST00000257555		147	Cac/Tac																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	353	528	2	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563168	21563168	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766080720		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	168	638	0	ENST00000382592.4:c.751G>A	p.Ala251Thr	p.A251T	ENST00000382592	NM_014572.2	251	Gcg/Acg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435573	110435573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	103	506	0	ENST00000375856.3:c.2828C>T	p.Ala943Val	p.A943V	ENST00000375856	NM_003749.2	943	gCc/gTc																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	39	476	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67358697	67358697	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	30	412	0	ENST00000327367.4:c.205A>T	p.Arg69Trp	p.R69W	ENST00000327367	NM_005902.3	69	Agg/Tgg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396382	396382	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200741961		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	203	491	0	ENST00000262320.3:c.644C>T	p.Ser215Leu	p.S215L	ENST00000262320	NM_003502.3	215	tCg/tTg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2220615	2220615	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-	rs774508592		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	154	481	0	ENST00000326181.6:c.237del	p.Ile80SerfsTer48	p.I80Sfs*48	ENST00000326181	NM_032271.2	78	Ccc/cc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857805	9857805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	195	543	1	ENST00000330684.3:c.3596C>T	p.Pro1199Leu	p.P1199L	ENST00000330684	NM_001134407.1	1199	cCg/cTg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	55	565	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993509	72993509	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	173	626	2	ENST00000268489.5:c.536del	p.Gly179AlafsTer22	p.G179Afs*22	ENST00000268489	NM_006885.3	179	gGc/gc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89857935	89857935	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11646374		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	47	467	0	ENST00000389301.3:c.1235C>T	p.Ala412Val	p.A412V	ENST00000389301	NM_000135.2	412	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	45	427	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	242	570	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	190	463	3	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131402	17131402	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs398124537		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	33	539	0	ENST00000285071.4:c.50G>A	p.Arg17His	p.R17H	ENST00000285071	NM_144997.5	17	cGc/cAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29683984	29683985	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	114	348	0	ENST00000358273.4:c.7747_7748del	p.Arg2583AspfsTer12	p.R2583Dfs*12	ENST00000358273	NM_001042492.2	2582	cAG/c																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37856539	37856540	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	129	529	0	ENST00000269571.5:c.54dup	p.Gly19ArgfsTer91	p.G19Rfs*91	ENST00000269571		16	-/C																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	239	675	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532653	63532654	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1301294410		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	200	534	2	ENST00000307078.5:c.1925dup	p.Ala643GlyfsTer64	p.A643Gfs*64	ENST00000307078	NM_004655.3	642	aag/aaAg																																																																															
YES1	7525	MSKCC	GRCh37	18	745962	745963	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	20	349	0	ENST00000314574.4:c.559_560del	p.Ser187Ter	p.S187*	ENST00000314574	NM_005433.3	187	AGt/t																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395646	45395646	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	72	341	0	ENST00000262160.6:c.488A>G	p.Asn163Ser	p.N163S	ENST00000262160	NM_005901.5	163	aAc/aGc																																																																															
STK11	6794	MSKCC	GRCh37	19	1223103	1223103	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782058		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	154	502	1	ENST00000326873.7:c.1040C>T	p.Ala347Val	p.A347V	ENST00000326873	NM_000455.4	347	gCg/gTg																																																																															
GNA11	2767	MSKCC	GRCh37	19	3115015	3115015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	57	544	0	ENST00000078429.4:c.550G>A	p.Val184Met	p.V184M	ENST00000078429	NM_002067.2	184	Gtg/Atg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4102403	4102403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1457335620		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	46	451	0	ENST00000262948.5:c.499G>A	p.Glu167Lys	p.E167K	ENST00000262948	NM_030662.3	167	Gag/Aag																																																																															
CARM1	10498	MSKCC	GRCh37	19	11024650	11024650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	53	498	0	ENST00000327064.4:c.767C>T	p.Ser256Leu	p.S256L	ENST00000327064	NM_199141.1	256	tCg/tTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272336	15272337	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs771517374		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	150	546	2	ENST00000263388.2:c.6102dup	p.Gly2035ArgfsTer60	p.G2035Rfs*60	ENST00000263388	NM_000435.2	2034	-/C																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288901	15288901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs958354298		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	138	412	0	ENST00000263388.2:c.3838C>T	p.Pro1280Ser	p.P1280S	ENST00000263388	NM_000435.2	1280	Ccg/Tcg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17384726	17384726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368554117		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	167	417	0	ENST00000359435.4:c.358G>A	p.Ala120Thr	p.A120T	ENST00000359435	NM_001033549.1	120	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222961	36222961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	205	593	0	ENST00000222270.7:c.5590C>T	p.Arg1864Ter	p.R1864*	ENST00000222270	NM_014727.1	1864	Cga/Tga																																																																															
CIC	23152	MSKCC	GRCh37	19	42797278	42797278	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs968289754		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	177	623	0	ENST00000575354.2:c.3640C>T	p.Arg1214Ter	p.R1214*	ENST00000575354	NM_015125.3	1214	Cga/Tga																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910306	50910306	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1341055535		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	56	511	1	ENST00000440232.2:c.1561C>T	p.Arg521Trp	p.R521W	ENST00000440232	NM_002691.3	521	Cgg/Tgg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25978890	25978890	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	97	255	0	ENST00000435504.4:c.1033G>T	p.Glu345Ter	p.E345*	ENST00000435504		345	Gaa/Taa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39278407	39278407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	22	300	0	ENST00000402219.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000402219	NM_005633.3	248	Cgc/Tgc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC	rs1361078163		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	39	463	0	ENST00000234420.5:c.3260_3261dup	p.Phe1088ProfsTer3	p.F1088Pfs*3	ENST00000234420	NM_000179.2	1085	acc/aCCcc																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919673	96919673	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1231066976		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	141	481	0	ENST00000258439.3:c.590G>A	p.Arg197His	p.R197H	ENST00000258439	NM_001193304.2	197	cGc/cAc																																																																															
CASP8	841	MSKCC	GRCh37	2	202131511	202131511	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs376330981		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			741	61	426	0	ENST00000358485.4:c.479A>G	p.Tyr160Cys	p.Y160C	ENST00000358485	NM_001080125.1	160	tAc/tGc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295773	212295773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1299031105		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	102	435	1	ENST00000342788.4:c.2540G>A	p.Arg847His	p.R847H	ENST00000342788	NM_005235.2	847	cGt/cAt																																																																															
INHA	3623	MSKCC	GRCh37	2	220437288	220437288	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1476801115		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	49	538	0	ENST00000243786.2:c.197del	p.Gly66AlafsTer61	p.G66Afs*61	ENST00000243786	NM_002191.3	64	ctG/ct																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661129	227661129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781654199		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			741	47	640	0	ENST00000305123.5:c.2326C>T	p.Arg776Cys	p.R776C	ENST00000305123	NM_005544.2	776	Cgc/Tgc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	244	437	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913396		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	144	403	0	ENST00000349496.5:c.95A>T	p.Asp32Val	p.D32V	ENST00000349496	NM_001904.3	32	gAc/gTc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610568	52610568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	18	322	0	ENST00000394830.3:c.3605C>T	p.Thr1202Ile	p.T1202I	ENST00000394830	NM_018313.4	1202	aCa/aTa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027087	71027087	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	185	507	0	ENST00000318789.4:c.1240del	p.Leu414Ter	p.L414*	ENST00000318789	NM_032682.5	414	Ctg/tg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202767	128202767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	148	485	0	ENST00000341105.2:c.953C>T	p.Ala318Val	p.A318V	ENST00000341105	NM_032638.4	318	gCc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	11	235	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155052	55155052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	199	459	1	ENST00000257290.5:c.2761G>A	p.Ala921Thr	p.A921T	ENST00000257290	NM_006206.4	921	Gct/Act																																																																															
TERT	7015	MSKCC	GRCh37	5	1295960	1295960	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	254	695	0				ENST00000310581	NM_198253.2																																																																																	
PDGFRB	5159	MSKCC	GRCh37	5	149516594	149516594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150173975		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	126	457	0	ENST00000261799.4:c.17C>T	p.Ala6Val	p.A6V	ENST00000261799	NM_002609.3	6	gCg/gTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053023	180053023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	147	580	1	ENST00000261937.6:c.1267del	p.Gln423ArgfsTer70	p.Q423Rfs*70	ENST00000261937	NM_182925.4	423	Cag/ag																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056575	26056575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75040909		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	135	467	0	ENST00000343677.2:c.82G>A	p.Ala28Thr	p.A28T	ENST00000343677	NM_005319.3	28	Gct/Act																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911274	29911274	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs199474568		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	28	373	0	ENST00000376809.5:c.573G>A	p.Trp191Ter	p.W191*	ENST00000376809	NM_002116.7	191	tgG/tgA																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129358	152129358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	36	492	0	ENST00000206249.3:c.311C>T	p.Ser104Phe	p.S104F	ENST00000206249	NM_000125.3	104	tCt/tTt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521890	157521890	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1199179337		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	331	552	0	ENST00000346085.5:c.4162G>A	p.Glu1388Lys	p.E1388K	ENST00000346085	NM_020732.3	1388	Gag/Aag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508725	106508725	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	204	536	2	ENST00000359195.3:c.723del	p.Gly242AlafsTer17	p.G242Afs*17	ENST00000359195	NM_002649.2	240	aCc/ac																																																																															
SMO	6608	MSKCC	GRCh37	7	128845086	128845086	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761395599		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	131	443	0	ENST00000249373.3:c.580G>A	p.Glu194Lys	p.E194K	ENST00000249373	NM_005631.4	194	Gaa/Aaa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	120	339	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884924	151884924	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	40	416	2	ENST00000262189.6:c.4669del	p.Ser1557HisfsTer6	p.S1557Hfs*6	ENST00000262189	NM_170606.2	1557	Tca/ca																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271461	38271461	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374473310		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	153	618	0	ENST00000425967.3:c.2360G>A	p.Arg787His	p.R787H	ENST00000425967	NM_001174067.1	787	cGc/cAc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370715	55370715	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1479682835		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	616	496	0	ENST00000297316.4:c.17C>T	p.Ala6Val	p.A6V	ENST00000297316	NM_022454.3	6	gCg/gTg																																																																															
TEK	7010	MSKCC	GRCh37	9	27212857	27212857	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs906836493		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	364	483	0	ENST00000380036.4:c.2839G>A	p.Asp947Asn	p.D947N	ENST00000380036	NM_000459.3	947	Gac/Aac																																																																															
SYK	6850	MSKCC	GRCh37	9	93606436	93606436	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201455170		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			699	112	513	0	ENST00000375746.1:c.256G>A	p.Ala86Thr	p.A86T	ENST00000375746	NM_001174167.1	86	Gcc/Acc																																																																															
ABL1	25	MSKCC	GRCh37	9	133759683	133759683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	35	569	0	ENST00000318560.5:c.2006C>T	p.Pro669Leu	p.P669L	ENST00000318560	NM_005157.4	669	cCc/cTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391799	139391799	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1455334351		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	313	576	0	ENST00000277541.6:c.6392del	p.Gly2131AlafsTer117	p.G2131Afs*117	ENST00000277541	NM_017617.3	2131	gGc/gc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	106	358	3	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139804418	139804418	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746259933		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	161	418	0	ENST00000247668.2:c.575G>A	p.Cys192Tyr	p.C192Y	ENST00000247668	NM_021138.3	192	tGc/tAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030472	47030472	+	intron_variant	Intron	SNP	C	C	T	rs782522553		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	136	462	1	ENST00000329236.7:c.201+1575C>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	52	290	3	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
NADK	65220	MSKCC	GRCh37	1	1686012	1686012	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754601133		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	68	556	0	ENST00000341426.5:c.814G>A	p.Asp272Asn	p.D272N	ENST00000341426	NM_023018.4	272	Gat/Aat																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190678	11190678	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			722	55	587	0	ENST00000361445.4:c.5521A>G	p.Thr1841Ala	p.T1841A	ENST00000361445	NM_004958.3	1841	Act/Gct																																																																															
MTOR	2475	MSKCC	GRCh37	1	11314015	11314015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	52	441	0	ENST00000361445.4:c.721G>A	p.Ala241Thr	p.A241T	ENST00000361445	NM_004958.3	241	Gca/Aca																																																																															
MTOR	2475	MSKCC	GRCh37	1	11314023	11314023	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	48	431	0	ENST00000361445.4:c.713T>A	p.Phe238Tyr	p.F238Y	ENST00000361445	NM_004958.3	238	tTt/tAt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16263949	16263949	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			756	68	588	0	ENST00000375759.3:c.10318A>T	p.Lys3440Ter	p.K3440*	ENST00000375759	NM_015001.2	3440	Aag/Tag																																																																															
MYCL	4610	MSKCC	GRCh37	1	40367020	40367020	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	37	612	0	ENST00000397332.2:c.177C>G	p.Ile59Met	p.I59M	ENST00000397332	NM_001033082.2	59	atC/atG																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797090	45797090	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	62	583	0	ENST00000372115.3:c.1281+2T>C		p.X427_splice	ENST00000372115	NM_001048171.1	427																																																																																
FUBP1	8880	MSKCC	GRCh37	1	78430774	78430775	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	34	438	0	ENST00000370768.2:c.614dup	p.Glu206ArgfsTer4	p.E206Rfs*4	ENST00000370768	NM_003902.3	205	gga/ggGa																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150923392	150923392	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	27	419	0	ENST00000271640.5:c.2039T>A	p.Leu680Ter	p.L680*	ENST00000271640	NM_001145415.1	680	tTg/tAg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936829	150936829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	189	447	0	ENST00000271640.5:c.3865C>T	p.Arg1289Cys	p.R1289C	ENST00000271640	NM_001145415.1	1289	Cgt/Tgt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729684	162729684	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	42	460	0	ENST00000367921.3:c.770T>C	p.Val257Ala	p.V257A	ENST00000367921	NM_006182.2	257	gTg/gCg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163309172	163309172	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	51	311	0	ENST00000271452.3:c.511T>A	p.Ser171Thr	p.S171T	ENST00000271452	NM_145697.2	171	Tct/Act																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012922	176012922	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	52	322	0	ENST00000367669.3:c.1454T>A	p.Leu485Gln	p.L485Q	ENST00000367669	NM_022457.5	485	cTg/cAg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206650159	206650159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	131	503	0	ENST00000367120.3:c.679C>T	p.Pro227Ser	p.P227S	ENST00000367120	NM_014002.3	227	Cca/Tca																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488883	231488884	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	102	406	0	ENST00000295050.7:c.1251dup	p.Asp418Ter	p.D418*	ENST00000295050	NM_032018.5	416	gtt/gTtt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097829	8097829	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	46	476	0	ENST00000346208.3:c.211A>C	p.Thr71Pro	p.T71P	ENST00000346208		71	Acg/Ccg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851198	63851198	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	39	529	0	ENST00000279873.7:c.1976A>G	p.Asp659Gly	p.D659G	ENST00000279873	NM_032199.2	659	gAc/gGc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851941	63851941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	62	502	0	ENST00000279873.7:c.2719G>A	p.Asp907Asn	p.D907N	ENST00000279873	NM_032199.2	907	Gat/Aat																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742945	17742945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	132	502	0	ENST00000250003.3:c.853G>A	p.Ala285Thr	p.A285T	ENST00000250003	NM_002478.4	285	Gct/Act																																																																															
ATM	472	MSKCC	GRCh37	11	108205726	108205726	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	79	313	0	ENST00000278616.4:c.8041G>T	p.Val2681Leu	p.V2681L	ENST00000278616	NM_000051.3	2681	Gtg/Ttg																																																																															
CBL	867	MSKCC	GRCh37	11	119156004	119156004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			706	67	599	0	ENST00000264033.4:c.1669G>A	p.Glu557Lys	p.E557K	ENST00000264033	NM_005188.3	557	Gaa/Aaa																																																																															
CBL	867	MSKCC	GRCh37	11	119170283	119170283	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs144191570		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	42	459	0	ENST00000264033.4:c.2513G>C	p.Gly838Ala	p.G838A	ENST00000264033	NM_005188.3	838	gGc/gCc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644557	21644557	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	198	332	0	ENST00000421138.2:c.110A>T	p.Gln37Leu	p.Q37L	ENST00000421138		37	cAg/cTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231336	46231336	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	58	395	0	ENST00000334344.6:c.1176T>A	p.Cys392Ter	p.C392*	ENST00000334344	NM_152641.2	392	tgT/tgA																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287459	46287459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	22	327	0	ENST00000334344.6:c.5318C>T	p.Ala1773Val	p.A1773V	ENST00000334344	NM_152641.2	1773	gCc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432467	49432467	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			718	56	555	0	ENST00000301067.7:c.8672G>T	p.Gly2891Val	p.G2891V	ENST00000301067	NM_003482.3	2891	gGg/gTg																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145034	58145034	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs759535768		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			786	48	503	0	ENST00000257904.6:c.310C>A	p.Leu104Met	p.L104M	ENST00000257904	NM_000075.3	104	Ctg/Atg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112940024	112940024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	286	378	0	ENST00000351677.2:c.1676C>A	p.Pro559His	p.P559H	ENST00000351677	NM_002834.3	559	cCt/cAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133219146	133219146	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	41	536	0	ENST00000320574.5:c.4898T>A	p.Ile1633Asn	p.I1633N	ENST00000320574	NM_006231.2	1633	aTc/aAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133252093	133252093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			699	95	532	0	ENST00000320574.5:c.1117G>A	p.Glu373Lys	p.E373K	ENST00000320574	NM_006231.2	373	Gag/Aag																																																																															
KLF5	688	MSKCC	GRCh37	13	73636474	73636474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	148	559	0	ENST00000377687.4:c.737C>T	p.Thr246Ile	p.T246I	ENST00000377687	NM_001730.3	246	aCa/aTa																																																																															
USP8	9101	MSKCC	GRCh37	15	50788153	50788153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	74	270	0	ENST00000307179.4:c.2767G>T	p.Val923Phe	p.V923F	ENST00000307179		923	Gtt/Ttt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2112576	2112576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs45517163		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	83	542	1	ENST00000219476.3:c.1336C>T	p.Gln446Ter	p.Q446*	ENST00000219476	NM_000548.3	446	Cag/Tag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779369	3779369	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	223	636	1	ENST00000262367.5:c.5679del	p.Thr1894HisfsTer21	p.T1894Hfs*21	ENST00000262367	NM_004380.2	1893	ccC/cc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56864594	56864594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	43	358	0	ENST00000308159.5:c.1082G>A	p.Arg361Lys	p.R361K	ENST00000308159	NM_014669.4	361	aGa/aAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29665042	29665042	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C	rs1060500356		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	30	313	0	ENST00000358273.4:c.6705-1G>C		p.X2235_splice	ENST00000358273	NM_001042492.2	2235																																																																																
BRCA1	672	MSKCC	GRCh37	17	41246359	41246359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	41	473	0	ENST00000357654.3:c.1189G>A	p.Asp397Asn	p.D397N	ENST00000357654	NM_007294.3	397	Gac/Aac																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56809900	56809900	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	25	333	0	ENST00000337432.4:c.1021A>G	p.Ile341Val	p.I341V	ENST00000337432	NM_058216.2	341	Atc/Gtc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533446	63533446	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	68	469	0	ENST00000307078.5:c.1708T>C	p.Phe570Leu	p.F570L	ENST00000307078	NM_004655.3	570	Ttt/Ctt																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61306900	61306900	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	22	408	0	ENST00000341074.5:c.580A>T	p.Asn194Tyr	p.N194Y	ENST00000341074	NM_002974.2	194	Aac/Tac																																																																															
STK11	6794	MSKCC	GRCh37	19	1226504	1226504	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782493		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	117	481	0	ENST00000326873.7:c.1160C>T	p.Pro387Leu	p.P387L	ENST00000326873	NM_000455.4	387	cCc/cTc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612429	1612429	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	116	340	0	ENST00000344749.5:c.1590T>A	p.Ser530Arg	p.S530R	ENST00000344749	NM_001136139.2	530	agT/agA																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222953	5222953	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	39	589	0	ENST00000357368.4:c.2850G>A	p.Trp950Ter	p.W950*	ENST00000357368	NM_002850.3	950	tgG/tgA																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222692	6222692	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776746658		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	160	451	0	ENST00000252674.7:c.550G>A	p.Ala184Thr	p.A184T	ENST00000252674	NM_005934.3	184	Gcc/Acc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250974	10250974	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	85	478	0	ENST00000340748.4:c.3506T>C	p.Met1169Thr	p.M1169T	ENST00000340748		1169	aTg/aCg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10254635	10254635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	129	401	0	ENST00000340748.4:c.2875C>A	p.Pro959Thr	p.P959T	ENST00000340748		959	Cca/Aca																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291097	10291097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1011	82	803	2	ENST00000340748.4:c.374C>T	p.Ala125Val	p.A125V	ENST00000340748		125	gCc/gTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135059	11135059	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	69	426	0	ENST00000344626.4:c.3026G>T	p.Arg1009Leu	p.R1009L	ENST00000344626	NM_003072.3	1009	cGc/cTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143988	11143988	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	110	483	0	ENST00000344626.4:c.3569C>G	p.Ala1190Gly	p.A1190G	ENST00000344626	NM_003072.3	1190	gCc/gGc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288768	15288768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	104	367	0	ENST00000263388.2:c.3971G>A	p.Cys1324Tyr	p.C1324Y	ENST00000263388	NM_000435.2	1324	tGc/tAc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967735	18967735	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	128	471	0	ENST00000262803.5:c.1874T>A	p.Leu625Gln	p.L625Q	ENST00000262803	NM_002911.3	625	cTg/cAg																																																																															
CD79A	973	MSKCC	GRCh37	19	42384752	42384752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	147	297	0	ENST00000221972.3:c.514G>A	p.Glu172Lys	p.E172K	ENST00000221972	NM_021601.3	172	Gag/Aag																																																																															
ERF	2077	MSKCC	GRCh37	19	42752879	42752879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	55	683	0	ENST00000222329.4:c.1385C>T	p.Ala462Val	p.A462V	ENST00000222329	NM_006494.2	462	gCa/gTa																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082259	16082259	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs886041290		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	35	416	0	ENST00000281043.3:c.73C>T	p.Gln25Ter	p.Q25*	ENST00000281043	NM_005378.4	25	Cag/Tag																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085630	16085630	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	37	435	0	ENST00000281043.3:c.806A>G	p.Glu269Gly	p.E269G	ENST00000281043	NM_005378.4	269	gAa/gGa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965769	25965769	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			705	65	493	0	ENST00000435504.4:c.3437C>A	p.Pro1146His	p.P1146H	ENST00000435504		1146	cCt/cAt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982412	25982412	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	44	359	0	ENST00000435504.4:c.878C>G	p.Ser293Ter	p.S293*	ENST00000435504		293	tCa/tGa																																																																															
CASP8	841	MSKCC	GRCh37	2	202131237	202131237	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	38	393	0	ENST00000358485.4:c.205A>T	p.Ile69Phe	p.I69F	ENST00000358485	NM_001080125.1	69	Att/Ttt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375208	31375208	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	421	593	0	ENST00000328111.2:c.608del	p.Pro203ArgfsTer23	p.P203Rfs*23	ENST00000328111	NM_006892.3	202	tCc/tc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306629	41306629	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	80	336	0	ENST00000373198.4:c.1030A>T	p.Asn344Tyr	p.N344Y	ENST00000373198	NM_133170.3	344	Aac/Tac																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62309699	62309699	+	missense_variant,splice_region_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	189	413	0	ENST00000482936.1:c.1037G>T	p.Ser346Ile	p.S346I	ENST00000482936		346	aGc/aTc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21346528	21346528	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368589786		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	168	535	0	ENST00000215739.8:c.1019G>A	p.Arg340Gln	p.R340Q	ENST00000215739	NM_006767.3	340	cGa/cAa																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29090039	29090039	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	35	96	0	ENST00000328354.6:c.1442T>C	p.Leu481Ser	p.L481S	ENST00000328354	NM_007194.3	481	tTa/tCa																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445207	29445208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	230	467	0	ENST00000544604.2:c.1046_1047dup	p.Glu350TrpfsTer14	p.E350Wfs*14	ENST00000544604	NM_001206998.1	346	-/GT																																																																															
EP300	2033	MSKCC	GRCh37	22	41523675	41523675	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	51	476	0	ENST00000263253.7:c.1091G>C	p.Cys364Ser	p.C364S	ENST00000263253	NM_001429.3	364	tGc/tCc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266200	41266200	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	113	464	0	ENST00000349496.5:c.197G>T	p.Trp66Leu	p.W66L	ENST00000349496	NM_001904.3	66	tGg/tTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47143028	47143028	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	94	249	0	ENST00000409792.3:c.4935A>T	p.Gln1645His	p.Q1645H	ENST00000409792	NM_014159.6	1645	caA/caT																																																																															
MST1R	4486	MSKCC	GRCh37	3	49935045	49935045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	58	611	0	ENST00000296474.3:c.1954C>T	p.Pro652Ser	p.P652S	ENST00000296474	NM_002447.2	652	Cct/Tct																																																																															
ATR	545	MSKCC	GRCh37	3	142280204	142280206	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	100	348	0	ENST00000350721.4:c.1228_1230del	p.Glu410del	p.E410del	ENST00000350721	NM_001184.3	410	GAG/-																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169977768	169977768	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	19	285	0	ENST00000295797.4:c.235A>G	p.Thr79Ala	p.T79A	ENST00000295797	NM_002740.5	79	Aca/Gca																																																																															
REST	5978	MSKCC	GRCh37	4	57777453	57777453	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376611047		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	193	526	0	ENST00000309042.7:c.649C>T	p.Arg217Cys	p.R217C	ENST00000309042	NM_005612.4	217	Cgc/Tgc																																																																															
ALB	213	MSKCC	GRCh37	4	74274489	74274489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	27	356	0	ENST00000295897.4:c.449C>T	p.Ala150Val	p.A150V	ENST00000295897	NM_000477.5	150	gCt/gTt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143181697	143181697	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	17	304	0	ENST00000262992.4:c.636T>G	p.Cys212Trp	p.C212W	ENST00000262992	NM_001101669.1	212	tgT/tgG																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540453	187540453	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	34	493	0	ENST00000441802.2:c.7287T>G	p.Ile2429Met	p.I2429M	ENST00000441802	NM_005245.3	2429	atT/atG																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630303	187630303	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	177	528	0	ENST00000441802.2:c.679C>A	p.Arg227Ser	p.R227S	ENST00000441802	NM_005245.3	227	Cgt/Agt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630371	187630371	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	45	493	0	ENST00000441802.2:c.611T>C	p.Ile204Thr	p.I204T	ENST00000441802	NM_005245.3	204	aTa/aCa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526244	31526244	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	138	457	0	ENST00000344624.3:c.796A>T	p.Arg266Ter	p.R266*	ENST00000344624		266	Aga/Tga																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526981	31526981	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1206389569		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	166	399	0	ENST00000344624.3:c.59G>A	p.Arg20Gln	p.R20Q	ENST00000344624		20	cGa/cAa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38953178	38953178	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	21	297	0	ENST00000357387.3:c.2806T>A	p.Ser936Thr	p.S936T	ENST00000357387	NM_152756.3	936	Tca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112174409	112174409	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs587782306		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	67	429	0	ENST00000257430.4:c.3118A>T	p.Arg1040Trp	p.R1040W	ENST00000257430	NM_000038.5	1040	Agg/Tgg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149433672	149433672	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776645465		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	25	361	1	ENST00000286301.3:c.2879C>T	p.Ala960Val	p.A960V	ENST00000286301	NM_005211.3	960	gCc/gTc																																																																															
IRF4	3662	MSKCC	GRCh37	6	405095	405095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	102	316	0	ENST00000380956.4:c.1177G>A	p.Asp393Asn	p.D393N	ENST00000380956	NM_001195286.1	393	Gac/Aac																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911269	29911269	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs199474566		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	30	336	0	ENST00000376809.5:c.568G>C	p.Glu190Gln	p.E190Q	ENST00000376809	NM_002116.7	190	Gag/Cag																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31238918	31238918	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	11	192	0	ENST00000376228.5:c.551T>C	p.Leu184Pro	p.L184P	ENST00000376228	NM_002117.5	184	cTg/cCg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178588	32178588	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	41	477	0	ENST00000375023.3:c.2806T>C	p.Ser936Pro	p.S936P	ENST00000375023	NM_004557.3	936	Tcc/Ccc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800570	32800570	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	42	508	0	ENST00000374899.4:c.977C>G	p.Ala326Gly	p.A326G	ENST00000374899	NM_018833.2	326	gCc/gGc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288684	33288684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	29	440	0	ENST00000374542.5:c.868C>T	p.Leu290Phe	p.L290F	ENST00000374542	NM_001141970.1	290	Ctt/Ttt																																																																															
SMO	6608	MSKCC	GRCh37	7	128846110	128846110	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			755	62	558	0	ENST00000249373.3:c.1040G>C	p.Gly347Ala	p.G347A	ENST00000249373	NM_005631.4	347	gGc/gCc																																																																															
BRAF	673	MSKCC	GRCh37	7	140624415	140624415	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	24	324	0	ENST00000288602.6:c.89G>C	p.Gly30Ala	p.G30A	ENST00000288602	NM_004333.4	30	gGc/gCc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873964	151873966	+	inframe_deletion	In_Frame_Del	DEL	AGC	AGC	-			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	48	439	0	ENST00000262189.6:c.8572_8574del	p.Ala2858del	p.A2858del	ENST00000262189	NM_170606.2	2858	GCT/-																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874847	151874847	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	148	469	0	ENST00000262189.6:c.7691G>T	p.Arg2564Met	p.R2564M	ENST00000262189	NM_170606.2	2564	aGg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877887	151877887	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375772772		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	47	453	0	ENST00000262189.6:c.7058C>T	p.Ser2353Phe	p.S2353F	ENST00000262189	NM_170606.2	2353	tCc/tTc																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23539027	23539027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	204	565	0	ENST00000380871.4:c.412G>A	p.Glu138Lys	p.E138K	ENST00000380871	NM_006167.3	138	Gag/Aag																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540144	23540144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	125	416	0	ENST00000380871.4:c.259G>A	p.Ala87Thr	p.A87T	ENST00000380871	NM_006167.3	87	Gcc/Acc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864644	68864644	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	69	312	0	ENST00000288368.4:c.15C>G	p.Ser5Arg	p.S5R	ENST00000288368	NM_024870.2	5	agC/agG																																																																															
RAD21	5885	MSKCC	GRCh37	8	117859897	117859897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			912	62	371	0	ENST00000297338.2:c.1738A>G	p.Ser580Gly	p.S580G	ENST00000297338	NM_006265.2	580	Agt/Ggt																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2047365	2047365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	23	238	0	ENST00000349721.2:c.927G>T	p.Gln309His	p.Q309H	ENST00000349721	NM_003070.3	309	caG/caT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460412	8460412	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	67	331	0	ENST00000356435.5:c.3874A>G	p.Arg1292Gly	p.R1292G	ENST00000356435		1292	Agg/Ggg																																																																															
SYK	6850	MSKCC	GRCh37	9	93637110	93637110	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	44	376	0	ENST00000375746.1:c.1160A>T	p.Lys387Met	p.K387M	ENST00000375746	NM_001174167.1	387	aAg/aTg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249854	110249854	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758232150		P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	209	536	0	ENST00000374672.4:c.821G>A	p.Cys274Tyr	p.C274Y	ENST00000374672	NM_004235.4	274	tGc/tAc																																																																															
ABL1	25	MSKCC	GRCh37	9	133759836	133759836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	47	489	0	ENST00000318560.5:c.2159C>T	p.Ser720Phe	p.S720F	ENST00000318560	NM_005157.4	720	tCc/tTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396239	139396239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			776	57	531	0	ENST00000277541.6:c.5599G>T	p.Val1867Phe	p.V1867F	ENST00000277541	NM_017617.3	1867	Gtt/Ttt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413920	139413920	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			715	133	453	0	ENST00000277541.6:c.840C>G	p.Asn280Lys	p.N280K	ENST00000277541	NM_017617.3	280	aaC/aaG																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918346	44918346	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	10	282	0	ENST00000377967.4:c.971T>A	p.Ile324Lys	p.I324K	ENST00000377967	NM_021140.2	324	aTa/aAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538941	187538942	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0066776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	167	472	0	ENST00000441802.2:c.8798_8799insC	p.Gln2933HisfsTer14	p.Q2933Hfs*14	ENST00000441802	NM_005245.3	2933	caa/caCa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597488	10597488	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	125	305	0	ENST00000171111.5:c.1715A>G	p.Tyr572Cys	p.Y572C	ENST00000171111	NM_203500.1	572	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579395	7579395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	143	460	1	ENST00000269305.4:c.292C>T	p.Pro98Ser	p.P98S	ENST00000269305	NM_001126112.2	98	Cct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0066815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	111	196	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
HGF	3082	MSKCC	GRCh37	7	81332010	81332010	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	31	342	0	ENST00000222390.5:c.2074G>C	p.Val692Leu	p.V692L	ENST00000222390	NM_000601.4	692	Gtt/Ctt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258889	16258889	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	53	627	3	ENST00000375759.3:c.6158del	p.Asn2053ThrfsTer11	p.N2053Tfs*11	ENST00000375759	NM_015001.2	2052	Aaa/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023135	27023135	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	35	421	0	ENST00000324856.7:c.245del	p.Gly82ValfsTer19	p.G82Vfs*19	ENST00000324856	NM_006015.4	81	Ggg/gg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	109	611	1	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429978	78429978	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	67	462	1	ENST00000370768.2:c.901del	p.Ile301TyrfsTer22	p.I301Yfs*22	ENST00000370768	NM_003902.3	301	Ata/ta																																																																															
SMYD3	64754	MSKCC	GRCh37	1	245927443	245927443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	76	416	0	ENST00000388985.4:c.1085del	p.Phe362SerfsTer12	p.F362Sfs*12	ENST00000388985		362	tTc/tc																																																																															
RET	5979	MSKCC	GRCh37	10	43600466	43600466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	83	504	0	ENST00000355710.3:c.692G>T	p.Arg231Leu	p.R231L	ENST00000355710	NM_020975.4	231	cGc/cTc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	57	404	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943741	71943742	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	115	632	0	ENST00000298229.2:c.1789_1790del	p.Leu597AlafsTer32	p.L597Afs*32	ENST00000298229	NM_001567.3	595	aTC/a																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948544	71948544	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200480750		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	94	592	0	ENST00000298229.2:c.3256C>T	p.Arg1086Cys	p.R1086C	ENST00000298229	NM_001567.3	1086	Cgt/Tgt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022376	12022376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			661	92	638	0	ENST00000396373.4:c.486del	p.Arg163GlyfsTer46	p.R163Gfs*46	ENST00000396373	NM_001987.4	161	aCc/ac																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244454	46244454	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs751704736		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	78	573	0	ENST00000334344.6:c.2552del	p.Pro851HisfsTer4	p.P851Hfs*4	ENST00000334344	NM_152641.2	850	Ccc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426774	49426774	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1334139538		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	94	577	2	ENST00000301067.7:c.11714A>T	p.Gln3905Leu	p.Q3905L	ENST00000301067	NM_003482.3	3905	cAg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440431	49440431	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	98	581	0	ENST00000301067.7:c.4379del	p.Pro1460HisfsTer46	p.P1460Hfs*46	ENST00000301067	NM_003482.3	1460	cCa/ca																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563293	21563293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367963331		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	76	585	0	ENST00000382592.4:c.626G>A	p.Arg209Gln	p.R209Q	ENST00000382592	NM_014572.2	209	cGg/cAg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133898	41133898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	40	489	0	ENST00000379561.5:c.1730del	p.Gly577AlafsTer5	p.G577Afs*5	ENST00000379561	NM_002015.3	577	gGc/gc																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68353757	68353757	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs774910383		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	23	340	0	ENST00000487270.1:c.592G>T	p.Glu198Ter	p.E198*	ENST00000487270	NM_133509.3	198	Gaa/Taa																																																																															
MGA	23269	MSKCC	GRCh37	15	42054540	42054541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	27	368	0	ENST00000219905.7:c.7731dup	p.Asp2578ArgfsTer45	p.D2578Rfs*45	ENST00000219905	NM_001164273.1	2575	aga/agAa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857391	9857391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	70	524	0	ENST00000330684.3:c.4010C>T	p.Ser1337Leu	p.S1337L	ENST00000330684	NM_001134407.1	1337	tCg/tTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991949	72991949	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs757302188		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	69	497	4	ENST00000268489.5:c.2096del	p.Gly699AlafsTer125	p.G699Afs*125	ENST00000268489	NM_006885.3	699	gGc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	99	500	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028690	12028690	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	48	436	0	ENST00000353533.5:c.891+2T>C		p.X297_splice	ENST00000353533	NM_003010.3	297																																																																																
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	73	428	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	89	648	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	81	516	0	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78899179	78899179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760865448		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	106	479	0	ENST00000306801.3:c.2818G>A	p.Asp940Asn	p.D940N	ENST00000306801	NM_020761.2	940	Gac/Aac																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	48	383	2	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50917074	50917074	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780138978		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	82	552	0	ENST00000440232.2:c.2326C>T	p.Arg776Trp	p.R776W	ENST00000440232	NM_002691.3	776	Cgg/Tgg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	73	574	0	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99156050	99156050	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866440781		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	40	483	1	ENST00000074304.5:c.730C>T	p.Arg244Trp	p.R244W	ENST00000074304	NM_001134224.1	244	Cgg/Tgg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212522482	212522482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	61	461	0	ENST00000342788.4:c.1943C>T	p.Ala648Val	p.A648V	ENST00000342788	NM_005235.2	648	gCt/gTt																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21336680	21336681	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760808069		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	57	494	4	ENST00000215739.8:c.27dup	p.Gln10AlafsTer24	p.Q10Afs*24	ENST00000215739	NM_006767.3	7	acg/acGg																																																																															
RHOA	387	MSKCC	GRCh37	3	49412914	49412914	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	105	516	0	ENST00000418115.1:c.109A>G	p.Thr37Ala	p.T37A	ENST00000418115	NM_001664.2	37	Aca/Gca																																																																															
ATR	545	MSKCC	GRCh37	3	142261555	142261555	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	31	427	1	ENST00000350721.4:c.3402del	p.Phe1134LeufsTer6	p.F1134Lfs*6	ENST00000350721	NM_001184.3	1134	ttT/tt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	85	390	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	97	418	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112176193	112176193	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	75	556	0	ENST00000257430.4:c.4906del	p.Asp1636MetfsTer14	p.D1636Mfs*14	ENST00000257430	NM_000038.5	1634	ccG/cc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931452	131931453	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	65	439	1	ENST00000265335.6:c.2164_2165del	p.Lys722GlyfsTer5	p.K722Gfs*5	ENST00000265335		719	ctAAaa/ctaa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149505029	149505029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	64	510	0	ENST00000261799.4:c.1786C>T	p.Pro596Ser	p.P596S	ENST00000261799	NM_002609.3	596	Ccg/Tcg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512395	149512395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	65	569	0	ENST00000261799.4:c.1045C>A	p.Leu349Met	p.L349M	ENST00000261799	NM_002609.3	349	Ctg/Atg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513488	149513488	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1465364786		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	95	610	0	ENST00000261799.4:c.715G>A	p.Gly239Arg	p.G239R	ENST00000261799	NM_002609.3	239	Ggg/Agg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520268	176520268	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	29	486	0	ENST00000292408.4:c.1187A>G	p.His396Arg	p.H396R	ENST00000292408	NM_213647.1	396	cAc/cGc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048737	180048737	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144803521		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	41	539	0	ENST00000261937.6:c.1825G>A	p.Asp609Asn	p.D609N	ENST00000261937	NM_182925.4	609	Gac/Aac																																																																															
FLT4	2324	MSKCC	GRCh37	5	180051002	180051002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs566339142		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	53	530	0	ENST00000261937.6:c.1481C>T	p.Thr494Met	p.T494M	ENST00000261937	NM_182925.4	494	aCg/aTg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30682856	30682856	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113702536		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	88	541	0	ENST00000376406.3:c.97C>T	p.Arg33Trp	p.R33W	ENST00000376406	NM_014641.2	33	Cgg/Tgg																																																																															
CCND3	896	MSKCC	GRCh37	6	41908284	41908284	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	33	439	0	ENST00000372991.4:c.238del	p.Leu80TrpfsTer3	p.L80Wfs*3	ENST00000372991	NM_001760.3	80	Ctg/tg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129338	152129338	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1361952517		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	55	473	0	ENST00000206249.3:c.296del	p.Pro99HisfsTer10	p.P99Hfs*10	ENST00000206249	NM_000125.3	97	ttC/tt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509636	106509636	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs867282260		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	111	527	0	ENST00000359195.3:c.1630C>T	p.Arg544Ter	p.R544*	ENST00000359195	NM_002649.2	544	Cga/Tga																																																																															
MET	4233	MSKCC	GRCh37	7	116403178	116403178	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	64	546	0	ENST00000397752.3:c.2443del	p.Leu815Ter	p.L815*	ENST00000397752	NM_000245.2	813	ctC/ct																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372313	55372313	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	37	618	0	ENST00000297316.4:c.1007del	p.Pro336LeufsTer51	p.P336Lfs*51	ENST00000297316	NM_022454.3	335	Ccc/cc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	93	483	2	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																															
CD274	29126	MSKCC	GRCh37	9	5465595	5465595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148141792		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	84	541	0	ENST00000381577.3:c.779G>A	p.Arg260His	p.R260H	ENST00000381577	NM_014143.3	260	cGt/cAt																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006027	22006027	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371415045		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	79	545	0	ENST00000276925.6:c.376C>T	p.Arg126Cys	p.R126C	ENST00000276925	NM_004936.3	126	Cgc/Tgc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882049	36882050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs780753361		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	62	480	0	ENST00000358127.4:c.963dup	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	-/C																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020769	37020769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	75	490	2	ENST00000358127.4:c.76del	p.Val26PhefsTer3	p.V26Ffs*3	ENST00000358127	NM_001280556.1	26	Gtt/tt																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	49	369	3	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156686	20156687	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	59	375	0	ENST00000379607.5:c.70dup	p.Arg24LysfsTer64	p.R24Kfs*64	ENST00000379607	NM_001412.3	24	aga/aAga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258778	16258778	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	40	575	0	ENST00000375759.3:c.6043A>G	p.Thr2015Ala	p.T2015A	ENST00000375759	NM_015001.2	2015	Act/Gct																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363057	40363057	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	79	432	0	ENST00000397332.2:c.1172T>C	p.Leu391Pro	p.L391P	ENST00000397332	NM_001033082.2	391	cTc/cCc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874223	155874223	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	62	550	0	ENST00000368323.3:c.308C>A	p.Thr103Lys	p.T103K	ENST00000368323	NM_006912.5	103	aCg/aAg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175956216	175956216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	29	364	0	ENST00000367669.3:c.1996C>A	p.Leu666Met	p.L666M	ENST00000367669	NM_022457.5	666	Ctg/Atg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206650084	206650084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	67	552	1	ENST00000367120.3:c.604G>A	p.Val202Met	p.V202M	ENST00000367120	NM_014002.3	202	Gtg/Atg																																																																															
PARP1	142	MSKCC	GRCh37	1	226555994	226555994	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	43	486	0	ENST00000366794.5:c.2183A>G	p.Gln728Arg	p.Q728R	ENST00000366794	NM_001618.3	728	cAg/cGg																																																																															
CTR9	9646	MSKCC	GRCh37	11	10785256	10785256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	36	461	0	ENST00000361367.2:c.1024C>T	p.Leu342Phe	p.L342F	ENST00000361367	NM_014633.3	342	Ctc/Ttc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94924702	94924702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	90	577	0	ENST00000536441.1:c.208G>A	p.Gly70Ser	p.G70S	ENST00000536441	NM_144665.3	70	Ggt/Agt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	401959	401959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	137	503	0	ENST00000399788.2:c.4832C>T	p.Ala1611Val	p.A1611V	ENST00000399788	NM_001042603.1	1611	gCa/gTa																																																																															
POLE	5426	MSKCC	GRCh37	12	133218289	133218289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	43	473	0	ENST00000320574.5:c.5322G>T	p.Gln1774His	p.Q1774H	ENST00000320574	NM_006231.2	1774	caG/caT																																																																															
USP8	9101	MSKCC	GRCh37	15	50774176	50774176	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	60	498	2	ENST00000307179.4:c.1720del	p.Arg574GlyfsTer20	p.R574Gfs*20	ENST00000307179		573	Aaa/aa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2111977	2111977	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	60	525	1	ENST00000219476.3:c.1225G>T	p.Glu409Ter	p.E409*	ENST00000219476	NM_000548.3	409	Gaa/Taa																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544326	86544326	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	45	499	0	ENST00000262426.4:c.151T>C	p.Tyr51His	p.Y51H	ENST00000262426	NM_001451.2	51	Tat/Cat																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435540	56435552	+	frameshift_variant	Frame_Shift_Del	DEL	AGGAACGAGGCCG	AGGAACGAGGCCG	-			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	81	484	0	ENST00000407977.2:c.1585_1597del	p.Arg529TrpfsTer167	p.R529Wfs*167	ENST00000407977		529	CGGCCTCGTTCCTtg/tg																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110270	3110270	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	98	572	0	ENST00000078429.4:c.260T>C	p.Met87Thr	p.M87T	ENST00000078429	NM_002067.2	87	aTg/aCg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366327	15366327	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1309211158		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	76	469	0	ENST00000263377.2:c.1828A>G	p.Met610Val	p.M610V	ENST00000263377	NM_058243.2	610	Atg/Gtg																																																																															
CIC	23152	MSKCC	GRCh37	19	42799056	42799056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	84	484	0	ENST00000575354.2:c.4540G>A	p.Val1514Met	p.V1514M	ENST00000575354	NM_015125.3	1514	Gtg/Atg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61717845	61717845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	26	468	0	ENST00000401558.2:c.1954C>T	p.His652Tyr	p.H652Y	ENST00000401558	NM_003400.3	652	Cac/Tac																																																																															
CASP8	841	MSKCC	GRCh37	2	202131516	202131516	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	62	513	0	ENST00000358485.4:c.482+2T>C		p.X161_splice	ENST00000358485	NM_001080125.1	161																																																																																
ZNRF3	84133	MSKCC	GRCh37	22	29383140	29383140	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	53	524	0	ENST00000544604.2:c.377T>C	p.Leu126Pro	p.L126P	ENST00000544604	NM_001206998.1	126	cTg/cCg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446437	29446437	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	53	507	0	ENST00000544604.2:c.2268G>T	p.Gln756His	p.Q756H	ENST00000544604	NM_001206998.1	756	caG/caT																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933740	49933740	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	90	549	0	ENST00000296474.3:c.2537G>T	p.Gly846Val	p.G846V	ENST00000296474	NM_002447.2	846	gGg/gTg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643884	52643884	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	27	444	0	ENST00000394830.3:c.2012A>T	p.Asn671Ile	p.N671I	ENST00000394830	NM_018313.4	671	aAc/aTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89156937	89156937	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	54	451	0	ENST00000336596.2:c.39C>A	p.Cys13Ter	p.C13*	ENST00000336596	NM_005233.5	13	tgC/tgA																																																																															
BCL6	604	MSKCC	GRCh37	3	187443315	187443315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	64	534	0	ENST00000232014.4:c.1811G>A	p.Cys604Tyr	p.C604Y	ENST00000232014	NM_001130845.1	604	tGc/tAc																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84406216	84406216	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs549027065		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	53	380	0	ENST00000321945.7:c.10G>A	p.Glu4Lys	p.E4K	ENST00000321945	NM_139076.2	4	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1296155	1296155	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	70	569	0				ENST00000310581	NM_198253.2																																																																																	
HIST1H3A	8350	MSKCC	GRCh37	6	26021115	26021116	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-	rs770926417		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	88	561	0	ENST00000357647.3:c.403_404del	p.Arg135GlyfsTer?	p.R135Gfs*?	ENST00000357647	NM_003529.2	133	gGA/g																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197288	26197288	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	82	674	0	ENST00000356476.2:c.191G>C	p.Arg64Pro	p.R64P	ENST00000356476		64	cGc/cCc																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31238107	31238107	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	42	682	0	ENST00000376228.5:c.775C>A	p.Pro259Thr	p.P259T	ENST00000376228	NM_002117.5	259	Cca/Aca																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31238166	31238166	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	20	277	0	ENST00000376228.5:c.716T>C	p.Leu239Pro	p.L239P	ENST00000376228	NM_002117.5	239	cTg/cCg																																																																															
HGF	3082	MSKCC	GRCh37	7	81350101	81350101	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1382781839		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	39	360	0	ENST00000222390.5:c.1231A>G	p.Thr411Ala	p.T411A	ENST00000222390	NM_000601.4	411	Aca/Gca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151864231	151864231	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	59	303	0	ENST00000262189.6:c.9750G>T	p.Gln3250His	p.Q3250H	ENST00000262189	NM_170606.2	3250	caG/caT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874668	151874668	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	72	550	0	ENST00000262189.6:c.7870G>T	p.Asp2624Tyr	p.D2624Y	ENST00000262189	NM_170606.2	2624	Gat/Tat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151960109	151960109	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	53	337	0	ENST00000262189.6:c.1291A>G	p.Lys431Glu	p.K431E	ENST00000262189	NM_170606.2	431	Aaa/Gaa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370883	55370883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	54	421	0	ENST00000297316.4:c.185C>A	p.Ala62Asp	p.A62D	ENST00000297316	NM_022454.3	62	gCc/gAc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2047307	2047307	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1284404989		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			57	21	115	1	ENST00000349721.2:c.869C>T	p.Ala290Val	p.A290V	ENST00000349721	NM_003070.3	290	gCg/gTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211512	98211512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	45	445	0	ENST00000331920.6:c.3643C>T	p.His1215Tyr	p.H1215Y	ENST00000331920	NM_000264.3	1215	Cac/Tac																																																																															
ABL1	25	MSKCC	GRCh37	9	133760191	133760191	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	46	425	0	ENST00000318560.5:c.2514G>T	p.Lys838Asn	p.K838N	ENST00000318560	NM_005157.4	838	aaG/aaT																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139815667	139815667	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	43	484	0	ENST00000247668.2:c.1138G>T	p.Ala380Ser	p.A380S	ENST00000247668	NM_021138.3	380	Gcc/Tcc																																																																															
SETD8	387893	MSKCC	GRCh37	12	123874010	123874011	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGC	rs1449285518		P-0066835-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	27	570	0	ENST00000330479.4:c.62_64dup	p.Ala21dup	p.A21dup	ENST00000330479	NM_020382.3	21	gag/gaGGCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0066836-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	59	545	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066836-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	42	340	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PARP1	142	MSKCC	GRCh37	1	226555310	226555310	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0066836-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	78	520	0	ENST00000366794.5:c.2278-1G>C		p.X760_splice	ENST00000366794	NM_001618.3	760																																																																																
SOX2	6657	MSKCC	GRCh37	3	181431029	181431055	+	inframe_deletion	In_Frame_Del	DEL	TGTCCCAGCACTACCAGAGCGGCCCGG	TGTCCCAGCACTACCAGAGCGGCCCGG	-			P-0066836-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	66	599	0	ENST00000325404.1:c.883_909del	p.Ser295_Val303del	p.S295_V303del	ENST00000325404	NM_003106.3	294	aTGTCCCAGCACTACCAGAGCGGCCCGGtg/atg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255883	16255883	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	338	485	0	ENST00000375759.3:c.3154del	p.Ile1052SerfsTer40	p.I1052Sfs*40	ENST00000375759	NM_015001.2	1050	Aaa/aa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156830849	156830849	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1174707423		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	274	455	0	ENST00000524377.1:c.127del	p.His43ThrfsTer26	p.H43Tfs*26	ENST00000524377	NM_002529.3	41	tgC/tg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846308	156846308	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	287	496	0	ENST00000524377.1:c.1753del	p.Leu585CysfsTer73	p.L585Cfs*73	ENST00000524377	NM_002529.3	583	cgC/cg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206652329	206652330	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782347019		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	310	544	1	ENST00000367120.3:c.1042dup	p.Arg348ProfsTer8	p.R348Pfs*8	ENST00000367120	NM_014002.3	346	gcc/gCcc																																																																															
TET1	80312	MSKCC	GRCh37	10	70333864	70333864	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528233201		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	352	522	0	ENST00000373644.4:c.1769G>A	p.Arg590Gln	p.R590Q	ENST00000373644	NM_030625.2	590	cGa/cAa																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112771514	112771514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	303	489	0	ENST00000369452.4:c.1692del	p.Pro565LeufsTer8	p.P565Lfs*8	ENST00000369452	NM_007373.3	563	Ggg/gg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998658	100998658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	293	564	0	ENST00000325455.5:c.1144C>T	p.Pro382Ser	p.P382S	ENST00000325455	NM_001202474.3	382	Ccg/Tcg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998925	100998925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	292	478	0	ENST00000325455.5:c.877C>T	p.Arg293Cys	p.R293C	ENST00000325455	NM_001202474.3	293	Cgc/Tgc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307394	118307394	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	105	228	2	ENST00000534358.1:c.173del	p.Pro58ArgfsTer92	p.P58Rfs*92	ENST00000534358	NM_005933.3	56	tCc/tc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	305	618	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373592	118373592	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782489222		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	349	522	0	ENST00000534358.1:c.6985C>T	p.Pro2329Ser	p.P2329S	ENST00000534358	NM_005933.3	2329	Cct/Tct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440431	49440431	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	271	552	0	ENST00000301067.7:c.4379del	p.Pro1460HisfsTer46	p.P1460Hfs*46	ENST00000301067	NM_003482.3	1460	cCa/ca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	299	519	2	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885574	111885574	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773486842		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	325	504	0	ENST00000341259.2:c.1351G>A	p.Gly451Ser	p.G451S	ENST00000341259	NM_005475.2	451	Ggc/Agc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	261	545	3	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
POLE	5426	MSKCC	GRCh37	12	133209267	133209267	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs5745021		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	299	514	0	ENST00000320574.5:c.6119C>T	p.Ala2040Val	p.A2040V	ENST00000320574	NM_006231.2	2040	gCg/gTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133220099	133220100	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-	rs758487568		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	338	512	11	ENST00000320574.5:c.4337_4338del	p.Val1446GlyfsTer3	p.V1446Gfs*3	ENST00000320574	NM_006231.2	1446	gTG/g																																																																															
POLE	5426	MSKCC	GRCh37	12	133245023	133245024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs767646338		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	321	548	0	ENST00000320574.5:c.2091dup	p.Phe699ValfsTer11	p.F699Vfs*11	ENST00000320574	NM_006231.2	697	-/C																																																																															
CD276	80381	MSKCC	GRCh37	15	73995362	73995362	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763918983		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	244	445	0	ENST00000318443.5:c.668G>A	p.Arg223His	p.R223H	ENST00000318443	NM_001024736.1	223	cGc/cAc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99460060	99460060	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs544049409		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	288	450	0	ENST00000268035.6:c.2156G>A	p.Arg719His	p.R719H	ENST00000268035	NM_000875.3	719	cGc/cAc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500474	99500474	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45475702		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	366	572	0	ENST00000268035.6:c.3907G>A	p.Val1303Ile	p.V1303I	ENST00000268035	NM_000875.3	1303	Gtc/Atc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828389	72828389	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750838080		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	330	544	0	ENST00000268489.5:c.8192G>A	p.Arg2731Gln	p.R2731Q	ENST00000268489	NM_006885.3	2731	cGg/cAg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979514	7979514	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141010860		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	294	474	1	ENST00000319144.4:c.1511C>T	p.Ala504Val	p.A504V	ENST00000319144	NM_001139.2	504	gCg/gTg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	291	501	1	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	236	505	3	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
STAT3	6774	MSKCC	GRCh37	17	40468917	40468917	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs869312892		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	253	375	0	ENST00000264657.5:c.2147C>T	p.Thr716Met	p.T716M	ENST00000264657	NM_139276.2	716	aCg/aTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	346	668	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435513	56435513	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	318	473	0	ENST00000407977.2:c.1624del	p.Thr542ProfsTer158	p.T542Pfs*158	ENST00000407977		542	Acc/cc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740727	58740727	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	318	544	1	ENST00000305921.3:c.1636del	p.Leu546Ter	p.L546*	ENST00000305921	NM_003620.3	544	ggC/gg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530042	63530042	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	245	391	0	ENST00000307078.5:c.2393del	p.Lys798ArgfsTer63	p.K798Rfs*63	ENST00000307078	NM_004655.3	798	aAg/ag																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099225	4099225	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200371894		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	40	443	0	ENST00000262948.5:c.893C>T	p.Pro298Leu	p.P298L	ENST00000262948	NM_030662.3	298	cCg/cTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221081	5221081	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199805837		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	372	576	0	ENST00000357368.4:c.3385G>A	p.Ala1129Thr	p.A1129T	ENST00000357368	NM_002850.3	1129	Gcc/Acc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5225777	5225777	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751437578		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	328	415	0	ENST00000357368.4:c.2455G>A	p.Ala819Thr	p.A819T	ENST00000357368	NM_002850.3	819	Gct/Act																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	85	206	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031737	11031737	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753354844		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	367	593	0	ENST00000327064.4:c.1549G>A	p.Ala517Thr	p.A517T	ENST00000327064	NM_199141.1	517	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	318	581	0	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222925	36222925	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746346674		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	342	636	0	ENST00000222270.7:c.5554G>A	p.Ala1852Thr	p.A1852T	ENST00000222270	NM_014727.1	1852	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	344	642	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25991736	25991736	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs530632623		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	282	420	0	ENST00000435504.4:c.506C>T	p.Ala169Val	p.A169V	ENST00000435504		169	gCg/gTg																																																																															
ALK	238	MSKCC	GRCh37	2	29446386	29446386	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371521416		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	319	540	0	ENST00000389048.3:c.3181C>T	p.Arg1061Trp	p.R1061W	ENST00000389048	NM_004304.4	1061	Cgg/Tgg																																																																															
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	281	382	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403254	213403254	+	frameshift_variant,start_lost,start_retained_variant	Frame_Shift_Del	DEL	T	T	-			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	208	434	0	ENST00000342788.4:c.1del	p.Met1?	p.M1?	ENST00000342788	NM_005235.2	1	Atg/tg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546626	9546626	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751328296		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	334	517	1	ENST00000353224.5:c.1396G>A	p.Ala466Thr	p.A466T	ENST00000353224	NM_177990.2	466	Gcc/Acc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31385068	31385068	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	293	464	0	ENST00000328111.2:c.1453C>T	p.Arg485Ter	p.R485*	ENST00000328111	NM_006892.3	485	Cga/Tga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	309	535	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52595976	52595977	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	286	400	0	ENST00000394830.3:c.3938dup	p.Ser1315ValfsTer26	p.S1315Vfs*26	ENST00000394830	NM_018313.4	1313	cca/ccCa																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	319	536	0	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119666150	119666150	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	245	408	0	ENST00000316626.5:c.331C>T	p.Arg111Ter	p.R111*	ENST00000316626		111	Cga/Tga																																																																															
GAB1	2549	MSKCC	GRCh37	4	144258384	144258385	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755581817		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	217	413	0	ENST00000262994.4:c.50dup	p.Glu18GlyfsTer34	p.E18Gfs*34	ENST00000262994	NM_002039.3	15	tcc/tCcc																																																																															
TERT	7015	MSKCC	GRCh37	5	1279524	1279524	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774381540		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	246	428	0	ENST00000310581.5:c.2012G>A	p.Arg671Gln	p.R671Q	ENST00000310581	NM_198253.2	671	cGg/cAg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31468080	31468080	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1458058411		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	295	461	1	ENST00000344624.3:c.2332C>T	p.Arg778Cys	p.R778C	ENST00000344624		778	Cgc/Tgc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	336	545	4	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	493	406	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685330	86685330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	46	367	0	ENST00000274376.6:c.3046C>T	p.Arg1016Cys	p.R1016C	ENST00000274376	NM_002890.2	1016	Cgt/Tgt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323288	31323288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	194	284	0	ENST00000412585.2:c.701C>A	p.Pro234His	p.P234H	ENST00000412585	NM_005514.6	234	cCt/cAt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188297	32188297	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs753855314		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	402	619	0	ENST00000375023.3:c.1044del	p.Gly349AlafsTer49	p.G349Afs*49	ENST00000375023	NM_004557.3	348	ggC/gg																																																																															
FYN	2534	MSKCC	GRCh37	6	111983042	111983042	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	273	552	8	ENST00000368678.4:c.1505del	p.Lys502ArgfsTer53	p.K502Rfs*53	ENST00000368678		502	aAg/ag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	303	418	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372128	55372128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	274	501	0	ENST00000297316.4:c.818G>A	p.Arg273Gln	p.R273Q	ENST00000297316	NM_022454.3	273	cGa/cAa																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2039777	2039782	+	inframe_deletion	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	rs762478166		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	205	532	12	ENST00000349721.2:c.702_707del	p.Gln237_Gln238del	p.Q237_Q238del	ENST00000349721	NM_003070.3	223	CAGCAG/-																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22008918	22008918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	224	408	0	ENST00000276925.6:c.35del	p.Gly12AlafsTer15	p.G12Afs*15	ENST00000276925	NM_004936.3	12	gGc/gc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395053	139395053	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1484525055		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	287	414	2	ENST00000277541.6:c.5885G>A	p.Arg1962His	p.R1962H	ENST00000277541	NM_017617.3	1962	cGc/cAc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841230	15841231	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGCCGG	rs752736259		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			722	184	621	0	ENST00000307771.7:c.1338_1343dup	p.Ser447_Arg448dup	p.S447_R448dup	ENST00000307771	NM_005089.3	447	-/AGCCGG																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933617	39933617	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	303	561	1	ENST00000378444.4:c.982del	p.Asp328ThrfsTer50	p.D328Tfs*50	ENST00000378444	NM_001123385.1	328	Gac/ac																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411366	63411366	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	386	639	0	ENST00000330258.3:c.1801C>T	p.Arg601Ter	p.R601*	ENST00000330258	NM_152424.3	601	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412124	63412124	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	302	618	0	ENST00000330258.3:c.1043del	p.Gly348AlafsTer16	p.G348Afs*16	ENST00000330258	NM_152424.3	348	gGc/gc																																																																															
MED12	9968	MSKCC	GRCh37	X	70357069	70357069	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200279192		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	322	553	0	ENST00000374080.3:c.5584C>T	p.Arg1862Cys	p.R1862C	ENST00000374080		1862	Cgc/Tgc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743856	46743856	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762444770		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	382	508	0	ENST00000371975.4:c.2146C>T	p.Arg716Trp	p.R716W	ENST00000371975	NM_003579.3	716	Cgg/Tgg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746044	162746044	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	362	550	0	ENST00000367921.3:c.2167A>C	p.Thr723Pro	p.T723P	ENST00000367921	NM_006182.2	723	Aca/Cca																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206646613	206646613	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	324	468	0	ENST00000367120.3:c.43C>A	p.Leu15Met	p.L15M	ENST00000367120	NM_014002.3	15	Ctg/Atg																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230492744	230492744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	316	455	0	ENST00000525115.1:c.448G>A	p.Ala150Thr	p.A150T	ENST00000525115		150	Gcc/Acc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100444	8100444	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	369	625	0	ENST00000346208.3:c.418T>G	p.Ser140Ala	p.S140A	ENST00000346208		140	Tcc/Gcc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852194	63852194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	323	470	0	ENST00000279873.7:c.2972G>A	p.Gly991Asp	p.G991D	ENST00000279873	NM_032199.2	991	gGc/gAc																																																																															
ATM	472	MSKCC	GRCh37	11	108178686	108178686	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659487		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	286	429	0	ENST00000278616.4:c.5737G>A	p.Val1913Met	p.V1913M	ENST00000278616	NM_000051.3	1913	Gtg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426551	49426551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	437	652	0	ENST00000301067.7:c.11937C>A	p.Asn3979Lys	p.N3979K	ENST00000301067	NM_003482.3	3979	aaC/aaA																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813342	102813342	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	287	523	0	ENST00000307046.8:c.347A>C	p.Lys116Thr	p.K116T	ENST00000307046	NM_001111285.1	116	aAg/aCg																																																																															
POLE	5426	MSKCC	GRCh37	12	133219884	133219884	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748522633		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	336	515	0	ENST00000320574.5:c.4477G>A	p.Ala1493Thr	p.A1493T	ENST00000320574	NM_006231.2	1493	Gca/Aca																																																																															
POLE	5426	MSKCC	GRCh37	12	133225574	133225574	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770024304		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	341	547	0	ENST00000320574.5:c.4090C>T	p.Arg1364Cys	p.R1364C	ENST00000320574	NM_006231.2	1364	Cgt/Tgt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562051	21562051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	325	474	0	ENST00000382592.4:c.1868G>T	p.Arg623Leu	p.R623L	ENST00000382592	NM_014572.2	623	cGg/cTg																																																																															
RB1	5925	MSKCC	GRCh37	13	48916810	48916810	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	171	346	0	ENST00000267163.4:c.340T>C	p.Ser114Pro	p.S114P	ENST00000267163	NM_000321.2	114	Tcg/Ccg																																																																															
CD276	80381	MSKCC	GRCh37	15	73996180	73996180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	301	519	0	ENST00000318443.5:c.914G>A	p.Ser305Asn	p.S305N	ENST00000318443	NM_001024736.1	305	aGc/aAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134383	2134383	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	347	576	0	ENST00000219476.3:c.4160C>A	p.Ser1387Tyr	p.S1387Y	ENST00000219476	NM_000548.3	1387	tCc/tAc																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2636752	2636752	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1043839627		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	360	525	0	ENST00000342085.4:c.1201G>A	p.Asp401Asn	p.D401N	ENST00000342085	NM_002613.4	401	Gac/Aac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15964988	15964988	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	345	529	0	ENST00000268712.3:c.5608A>C	p.Thr1870Pro	p.T1870P	ENST00000268712	NM_006311.3	1870	Acc/Ccc																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33680051	33680051	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs755740719		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	243	326	0	ENST00000308377.4:c.2030A>G	p.Asp677Gly	p.D677G	ENST00000308377	NM_152270.3	677	gAt/gGt																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40353877	40353877	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	342	466	0	ENST00000293328.3:c.2243A>G	p.Asp748Gly	p.D748G	ENST00000293328	NM_012448.3	748	gAc/gGc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58725286	58725286	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	316	486	0	ENST00000305921.3:c.860A>G	p.Glu287Gly	p.E287G	ENST00000305921	NM_003620.3	287	gAa/gGa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622129	1622129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	292	573	0	ENST00000344749.5:c.746T>C	p.Leu249Pro	p.L249P	ENST00000344749	NM_001136139.2	249	cTc/cCc																																																																															
INSR	3643	MSKCC	GRCh37	19	7125526	7125526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	323	513	0	ENST00000302850.5:c.3026C>A	p.Ser1009Tyr	p.S1009Y	ENST00000302850	NM_000208.2	1009	tCt/tAt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350809	15350809	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200117669		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	252	442	0	ENST00000263377.2:c.3194C>T	p.Pro1065Leu	p.P1065L	ENST00000263377	NM_058243.2	1065	cCg/cTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42798108	42798108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	340	532	0	ENST00000575354.2:c.4062C>A	p.Asp1354Glu	p.D1354E	ENST00000575354	NM_015125.3	1354	gaC/gaA																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467185	25467185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	346	508	0	ENST00000264709.3:c.1690G>A	p.Asp564Asn	p.D564N	ENST00000264709	NM_175629.2	564	Gac/Aac																																																																															
REL	5966	MSKCC	GRCh37	2	61145621	61145621	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	325	432	0	ENST00000295025.8:c.736del	p.Thr246LeufsTer12	p.T246Lfs*12	ENST00000295025	NM_002908.2	245	Aaa/aa																																																																															
CASP8	841	MSKCC	GRCh37	2	202136290	202136290	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	289	464	0	ENST00000358485.4:c.537del	p.Phe179LeufsTer18	p.F179Lfs*18	ENST00000358485	NM_001080125.1	178	tcT/tc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39728846	39728846	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	322	447	0	ENST00000361337.2:c.1126C>T	p.Arg376Ter	p.R376*	ENST00000361337	NM_003286.2	376	Cga/Tga																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436633	52436633	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	328	482	0	ENST00000460680.1:c.2041A>G	p.Met681Val	p.M681V	ENST00000460680	NM_004656.3	681	Atg/Gtg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185165573	185165574	+	splice_region_variant,intron_variant	Splice_Region	DEL	AA	AA	-			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	241	335	0	ENST00000265026.3:c.852-3_852-2del		p.X284_splice	ENST00000265026	NM_004721.4	284																																																																																
MAP3K13	9175	MSKCC	GRCh37	3	185191528	185191528	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	328	496	1	ENST00000265026.3:c.2413del	p.Thr805GlnfsTer19	p.T805Qfs*19	ENST00000265026	NM_004721.4	803	cgA/cg																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383899	84383899	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs769962886		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	297	485	0	ENST00000321945.7:c.953A>G	p.Asp318Gly	p.D318G	ENST00000321945	NM_139076.2	318	gAt/gGt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79950583	79950583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	237	409	0	ENST00000265081.6:c.37G>A	p.Ala13Thr	p.A13T	ENST00000265081	NM_002439.4	13	Gcc/Acc																																																																															
E2F3	1871	MSKCC	GRCh37	6	20487020	20487020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	274	413	0	ENST00000346618.3:c.985C>T	p.Pro329Ser	p.P329S	ENST00000346618	NM_001949.4	329	Cct/Tct																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020821	26020821	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758782004		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	385	661	0	ENST00000357647.3:c.104G>A	p.Gly35Asp	p.G35D	ENST00000357647	NM_003529.2	35	gGc/gAc																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045763	26045763	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	372	575	0	ENST00000540144.1:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000540144	NM_003531.2	42	tAc/tGc																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271549	26271549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	337	577	0	ENST00000305910.3:c.64G>A	p.Ala22Thr	p.A22T	ENST00000305910	NM_003534.2	22	Gcc/Acc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910601	29910623	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCGTGGGCTACGTGGACGACA	CGCCGTGGGCTACGTGGACGACA	-			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	195	472	0	ENST00000376809.5:c.144_166del	p.Gly50ArgfsTer41	p.G50Rfs*41	ENST00000376809	NM_002116.7	47	atCGCCGTGGGCTACGTGGACGACAcg/atcg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324901	31324901	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1386205687		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	185	422	0	ENST00000412585.2:c.35T>C	p.Leu12Pro	p.L12P	ENST00000412585	NM_005514.6	12	cTg/cCg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729612	41729612	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1202073030		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	344	586	0	ENST00000242208.4:c.917G>A	p.Arg306His	p.R306H	ENST00000242208	NM_002192.2	306	cGc/cAc																																																																															
SMO	6608	MSKCC	GRCh37	7	128829092	128829092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	224	339	0	ENST00000249373.3:c.100G>A	p.Gly34Arg	p.G34R	ENST00000249373	NM_005631.4	34	Ggg/Agg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145736923	145736923	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1375776479		P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	296	498	0	ENST00000428558.2:c.3518C>T	p.Pro1173Leu	p.P1173L	ENST00000428558	NM_004260.3	1173	cCg/cTg																																																																															
CD274	29126	MSKCC	GRCh37	9	5462933	5462933	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	322	461	0	ENST00000381577.3:c.494T>C	p.Val165Ala	p.V165A	ENST00000381577	NM_014143.3	165	gTc/gCc																																																																															
CDKN2B-AS1	100048912	MSKCC	GRCh37	9	21994178	21994178	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	267	494	0				ENST00000428597																																																																																		
PAX5	5079	MSKCC	GRCh37	9	36882000	36882000	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	258	426	0	ENST00000358127.4:c.1012+1G>A		p.X338_splice	ENST00000358127	NM_001280556.1	338																																																																																
ABL1	25	MSKCC	GRCh37	9	133759569	133759569	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	372	565	0	ENST00000318560.5:c.1892G>T	p.Arg631Ile	p.R631I	ENST00000318560	NM_005157.4	631	aGa/aTa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399885	139399885	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	314	532	0	ENST00000277541.6:c.4463A>C	p.Lys1488Thr	p.K1488T	ENST00000277541	NM_017617.3	1488	aAg/aCg																																																																															
MED12	9968	MSKCC	GRCh37	X	70342365	70342365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066840-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	325	461	2	ENST00000374080.3:c.1256C>T	p.Ala419Val	p.A419V	ENST00000374080		419	gCa/gTa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690847	89690847	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587776667		P-0066841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	23	283	0	ENST00000371953.3:c.253+1G>A		p.X85_splice	ENST00000371953	NM_000314.4	85																																																																																
PTEN	5728	MSKCC	GRCh37	10	89720833	89720833	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066841-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	42	164	0	ENST00000371953.3:c.986del	p.Asn329IlefsTer15	p.N329Ifs*15	ENST00000371953	NM_000314.4	328	gcA/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0066873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	177	410	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0066873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	143	305	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57857549	57857549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			741	141	360	1	ENST00000228682.2:c.79del	p.Ala27ProfsTer51	p.A27Pfs*51	ENST00000228682	NM_005269.2	25	caG/ca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980879	40980879	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs192708116		P-0066873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1121	89	380	0	ENST00000373198.4:c.1607C>T	p.Ser536Leu	p.S536L	ENST00000373198	NM_133170.3	536	tCg/tTg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44896898	44896898	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0066873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	79	264	0	ENST00000377967.4:c.620-2A>T		p.X207_splice	ENST00000377967	NM_021140.2	207																																																																																
TGFBR1	7046	MSKCC	GRCh37	9	101911460	101911460	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0066873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	174	297	0	ENST00000374994.4:c.1387-2A>T		p.X463_splice	ENST00000374994	NM_004612.2	463																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9857727	9857727	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0066873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			834	188	474	0	ENST00000330684.3:c.3674C>G	p.Ser1225Ter	p.S1225*	ENST00000330684	NM_001134407.1	1225	tCa/tGa																																																																															
IGF1	3479	MSKCC	GRCh37	12	102869523	102869523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			737	68	380	0	ENST00000307046.8:c.118C>T	p.Leu40Phe	p.L40F	ENST00000307046	NM_001111285.1	40	Ctc/Ttc																																																																															
IL10	3586	MSKCC	GRCh37	1	206942002	206942002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	132	321	0	ENST00000423557.1:c.516G>A	p.Met172Ile	p.M172I	ENST00000423557	NM_000572.2	172	atG/atA																																																																															
ERF	2077	MSKCC	GRCh37	19	42752964	42752964	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749808726		P-0066873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			927	207	424	0	ENST00000222329.4:c.1300G>A	p.Glu434Lys	p.E434K	ENST00000222329	NM_006494.2	434	Gag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108181023	108181023	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	112	298	0	ENST00000278616.4:c.5899A>T	p.Met1967Leu	p.M1967L	ENST00000278616	NM_000051.3	1967	Atg/Ttg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273995	10273995	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			718	158	480	0	ENST00000330684.3:c.274G>T	p.Gly92Trp	p.G92W	ENST00000330684	NM_001134407.1	92	Ggg/Tgg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248600	212248600	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			926	28	468	0	ENST00000342788.4:c.3667A>C	p.Lys1223Gln	p.K1223Q	ENST00000342788	NM_005235.2	1223	Aag/Cag																																																																															
ERG	2078	MSKCC	GRCh37	21	39755579	39755579	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			845	223	446	0	ENST00000288319.7:c.1186G>T	p.Ala396Ser	p.A396S	ENST00000288319	NM_182918.3	396	Gcc/Tcc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845223	151845223	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			908	221	412	1	ENST00000262189.6:c.13789C>A	p.Arg4597Ser	p.R4597S	ENST00000262189	NM_170606.2	4597	Cgc/Agc																																																																															
REST	5978	MSKCC	GRCh37	4	57777079	57777079	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	188	382	0	ENST00000309042.7:c.275G>T	p.Gly92Val	p.G92V	ENST00000309042	NM_005612.4	92	gGa/gTa																																																																															
SESN3	143686	MSKCC	GRCh37	11	94911956	94911956	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	53	300	0	ENST00000536441.1:c.974C>G	p.Ser325Cys	p.S325C	ENST00000536441	NM_144665.3	325	tCt/tGt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3827626	3827626	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	120	285	0	ENST00000262367.5:c.2146C>T	p.Gln716Ter	p.Q716*	ENST00000262367	NM_004380.2	716	Caa/Taa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508657	106508657	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			862	148	422	0	ENST00000359195.3:c.651C>A	p.Asn217Lys	p.N217K	ENST00000359195	NM_002649.2	217	aaC/aaA																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146725	185146725	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			910	89	459	0	ENST00000265026.3:c.356A>G	p.Gln119Arg	p.Q119R	ENST00000265026	NM_004721.4	119	cAg/cGg																																																																															
BARD1	580	MSKCC	GRCh37	2	215645906	215645906	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758140052		P-0066873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			736	80	435	0	ENST00000260947.4:c.692C>T	p.Ser231Phe	p.S231F	ENST00000260947	NM_000465.2	231	tCc/tTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220659	1220659	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	163	394	0	ENST00000326873.7:c.677A>T	p.Asn226Ile	p.N226I	ENST00000326873	NM_000455.4	226	aAc/aTc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251717	212251718	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	A			P-0066873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			871	173	450	0	ENST00000342788.4:c.3341_3342delinsT	p.Pro1114LeufsTer38	p.P1114Lfs*38	ENST00000342788	NM_005235.2	1114	cCA/cT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0066921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	399	329	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770587	40770587	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776338672		P-0066921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	31	287	0	ENST00000373198.4:c.2795G>A	p.Arg932His	p.R932H	ENST00000373198	NM_133170.3	932	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108175440	108175440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	118	254	0	ENST00000278616.4:c.5535G>C	p.Leu1845Phe	p.L1845F	ENST00000278616	NM_000051.3	1845	ttG/ttC																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177054	56177055	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-	rs1311306052		P-0066921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	148	281	0	ENST00000399503.3:c.2326_2327del	p.Ile776CysfsTer4	p.I776Cfs*4	ENST00000399503	NM_005921.1	775	cAT/c																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111509	56111519	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCGGCTGC	CCCGCGGCTGC	-			P-0066921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	256	310	0	ENST00000399503.3:c.110_120del	p.Pro37ArgfsTer35	p.P37Rfs*35	ENST00000399503	NM_005921.1	37	CCCGCGGCTGCc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7579559	7579560	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0066921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	170	364	0	ENST00000269305.4:c.127_128del	p.Leu43AspfsTer8	p.L43Dfs*8	ENST00000269305	NM_001126112.2	43	TTg/g																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280023	66280023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066985-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	36	412	0	ENST00000273854.3:c.1666G>A	p.Glu556Lys	p.E556K	ENST00000273854	NM_004439.5	556	Gag/Aag																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575148	64575148	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	260	745	0	ENST00000337652.1:c.674G>A	p.Trp225Ter	p.W225*	ENST00000337652	NM_130803.2	225	tGg/tAg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288363	33288363	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	25	694	0	ENST00000374542.5:c.1045G>T	p.Asp349Tyr	p.D349Y	ENST00000374542	NM_001141970.1	349	Gac/Tac																																																																															
DAXX	1616	MSKCC	GRCh37	6	33286878	33286885	+	frameshift_variant	Frame_Shift_Del	DEL	CCACCCTC	CCACCCTC	-			P-0066988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	232	763	0	ENST00000374542.5:c.2052_2059del	p.Arg685LeufsTer53	p.R685Lfs*53	ENST00000374542	NM_001141970.1	684	acGAGGGTGGac/acac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922909	44922910	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0066988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	24	313	0	ENST00000377967.4:c.1771_1772del	p.Ile591PhefsTer5	p.I591Ffs*5	ENST00000377967	NM_021140.2	590	acTAtt/actt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0037675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			503	112	392	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0037675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			553	17	266	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188296	32188296	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs561687277		P-0037675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			825	114	500	0	ENST00000375023.3:c.1045G>A	p.Gly349Ser	p.G349S	ENST00000375023	NM_004557.3	349	Ggc/Agc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267710	198267710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			570	67	331	0	ENST00000335508.6:c.1769G>T	p.Arg590Ile	p.R590I	ENST00000335508	NM_012433.2	590	aGa/aTa																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156740	20156740	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0037675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	138	252	0	ENST00000379607.5:c.17G>T	p.Gly6Val	p.G6V	ENST00000379607	NM_001412.3	6	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			451	98	260	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CD79B	974	MSKCC	GRCh37	17	62006662	62006662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			773	161	462	0	ENST00000392795.3:c.617C>A	p.Ala206Asp	p.A206D	ENST00000392795	NM_001039933.1	206	gCc/gAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115749	8115749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			601	140	429	0	ENST00000346208.3:c.1095C>A	p.Asn365Lys	p.N365K	ENST00000346208		365	aaC/aaA																																																																															
CARM1	10498	MSKCC	GRCh37	19	11024641	11024648	+	frameshift_variant	Frame_Shift_Del	DEL	TCATCATC	TCATCATC	-			P-0037675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			659	104	455	0	ENST00000327064.4:c.760_767del	p.Ile254GlyfsTer35	p.I254Gfs*35	ENST00000327064	NM_199141.1	253	aTCATCATC/a																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981806	70981806	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			727	106	400	0	ENST00000276594.2:c.290A>G	p.Lys97Arg	p.K97R	ENST00000276594	NM_024504.3	97	aAg/aGg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486218	8486218	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			572	130	394	0	ENST00000356435.5:c.2599C>A	p.Pro867Thr	p.P867T	ENST00000356435		867	Cca/Aca																																																																															
MED12	9968	MSKCC	GRCh37	X	70349608	70349608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			830	115	494	0	ENST00000374080.3:c.3770G>T	p.Gly1257Val	p.G1257V	ENST00000374080		1257	gGc/gTc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43784619	43784619	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1323524336		P-0060751-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			493	46	374	0	ENST00000382044.4:c.55C>T	p.Gln19Ter	p.Q19*	ENST00000382044	NM_001141980.1	19	Cag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045187	47045187	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0060751-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			287	79	235	0	ENST00000329236.7:c.2194G>T	p.Glu732Ter	p.E732*	ENST00000329236	NM_001204466.1	732	Gag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101280	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCCCAGGGCCC	CCCCCCAGGGCCC	-			P-0060751-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			480	93	457	0	ENST00000324856.7:c.4551_4563del	p.Gln1519IlefsTer4	p.Q1519Ifs*4	ENST00000324856	NM_006015.4	1517	gCCCCCCAGGGCCCc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398280	25398281	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0060751-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			306	90	289	1	ENST00000256078.4:c.38_39delinsAA	p.Gly13Glu	p.G13E	ENST00000256078	NM_033360.2	13	gGC/gAA																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43784630	43784630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060751-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			495	42	350	0	ENST00000382044.4:c.44C>T	p.Ser15Leu	p.S15L	ENST00000382044	NM_001141980.1	15	tCa/tTa																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19258511	19258511	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0060751-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			572	52	455	0	ENST00000162023.5:c.389T>G	p.Leu130Arg	p.L130R	ENST00000162023		130	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0063170-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			695	29	580	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0063170-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			365	13	334	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NBN	4683	MSKCC	GRCh37	8	90982787	90982792	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TAAAAA	TAAAAA	-			P-0065615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			899	193	438	0	ENST00000265433.3:c.703-7_703-2del		p.X235_splice	ENST00000265433	NM_002485.4	235																																																																																
SPOP	8405	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519967		P-0066027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	119	417	0	ENST00000347630.2:c.398T>G	p.Phe133Cys	p.F133C	ENST00000347630	NM_001007230.1	133	tTc/tGc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975414	13975414	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	64	432	0	ENST00000405192.2:c.473del	p.Thr158AsnfsTer97	p.T158Nfs*97	ENST00000405192	NM_001163147.1	158	aCa/aa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719737	61719737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	73	487	1	ENST00000401558.2:c.1531G>A	p.Glu511Lys	p.E511K	ENST00000401558	NM_003400.3	511	Gag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874365	151874365	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746319127		P-0066087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	71	521	0	ENST00000262189.6:c.8173G>A	p.Glu2725Lys	p.E2725K	ENST00000262189	NM_170606.2	2725	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	179	559	0	ENST00000269305.4:c.392del	p.Asn131ThrfsTer39	p.N131Tfs*39	ENST00000269305	NM_001126112.2	131	aAc/ac																																																																															
TERT	7015	MSKCC	GRCh37	5	1295960	1295960	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0066087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	188	765	0				ENST00000310581	NM_198253.2																																																																																	
TSC2	7249	MSKCC	GRCh37	16	2121792	2121792	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	159	598	0	ENST00000219476.3:c.1954G>C	p.Glu652Gln	p.E652Q	ENST00000219476	NM_000548.3	652	Gag/Cag																																																																															
ATRX	546	MSKCC	GRCh37	X	76812990	76812990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	47	451	0	ENST00000373344.5:c.6631G>A	p.Glu2211Lys	p.E2211K	ENST00000373344	NM_000489.3	2211	Gag/Aag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968988	15968988	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			29	111	466	0	ENST00000268712.3:c.4762C>T	p.Gln1588Ter	p.Q1588*	ENST00000268712	NM_006311.3	1588	Cag/Tag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65305377	65305377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	135	617	0	ENST00000342505.4:c.2751C>A	p.Asn917Lys	p.N917K	ENST00000342505	NM_002227.2	917	aaC/aaA																																																																															
NF1	4763	MSKCC	GRCh37	17	29679433	29679433	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0066087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			37	87	387	0	ENST00000358273.4:c.7615+1G>T		p.X2539_splice	ENST00000358273	NM_001042492.2	2539																																																																																
GATA3	2625	MSKCC	GRCh37	10	8111532	8111532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	188	498	0	ENST00000346208.3:c.1018G>A	p.Ala340Thr	p.A340T	ENST00000346208		340	Gcc/Acc																																																																															
PGR	5241	MSKCC	GRCh37	11	100933207	100933210	+	frameshift_variant	Frame_Shift_Del	DEL	GAAA	GAAA	-			P-0066087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			94	72	459	0	ENST00000325455.5:c.2180_2183del	p.Leu727GlnfsTer2	p.L727Qfs*2	ENST00000325455	NM_001202474.3	727	cTTTCa/ca																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251126	99251126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	47	526	0	ENST00000268035.6:c.430G>A	p.Glu144Lys	p.E144K	ENST00000268035	NM_000875.3	144	Gag/Aag																																																																															
TSC1	7248	MSKCC	GRCh37	9	135804195	135804195	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	82	586	0	ENST00000298552.3:c.65G>T	p.Arg22Leu	p.R22L	ENST00000298552	NM_001162426.1	22	cGg/cTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717733	89717733	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			26	69	387	0	ENST00000371953.3:c.758T>G	p.Ile253Ser	p.I253S	ENST00000371953	NM_000314.4	253	aTc/aGc																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626879	14626879	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	185	626	0	ENST00000254322.2:c.896G>C	p.Gly299Ala	p.G299A	ENST00000254322	NM_006145.1	299	gGa/gCa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275878	38275878	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	191	575	0	ENST00000425967.3:c.1391C>G	p.Ser464Cys	p.S464C	ENST00000425967	NM_001174067.1	464	tCc/tGc																																																																															
NF1	4763	MSKCC	GRCh37	17	29556865	29556865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			57	16	281	2	ENST00000358273.4:c.2863G>A	p.Asp955Asn	p.D955N	ENST00000358273	NM_001042492.2	955	Gat/Aat																																																																															
BRAF	673	MSKCC	GRCh37	7	140624440	140624440	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	130	432	0	ENST00000288602.6:c.64G>T	p.Asp22Tyr	p.D22Y	ENST00000288602	NM_004333.4	22	Gac/Tac																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353986	15353986	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			89	80	212	0	ENST00000263377.2:c.2894C>G	p.Ser965Cys	p.S965C	ENST00000263377	NM_058243.2	965	tCt/tGt																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150913879	150913879	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066087-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	80	377	0	ENST00000271640.5:c.522G>C	p.Lys174Asn	p.K174N	ENST00000271640	NM_001145415.1	174	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0066459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	108	443	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0066459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	22	480	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
ABL1	25	MSKCC	GRCh37	9	133755478	133755478	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1355584861		P-0066459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	90	444	0	ENST00000318560.5:c.1447C>T	p.Arg483Trp	p.R483W	ENST00000318560	NM_005157.4	483	Cgg/Tgg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532456	63532456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780123		P-0066459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	115	482	0	ENST00000307078.5:c.2123C>T	p.Ser708Leu	p.S708L	ENST00000307078	NM_004655.3	708	tCg/tTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603007	48603007	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0066459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	35	330	0	ENST00000342988.3:c.1309-1G>C		p.X437_splice	ENST00000342988	NM_005359.5	437																																																																																
APC	324	MSKCC	GRCh37	5	112174001	112174002	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0066459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	66	516	0	ENST00000257430.4:c.2711_2712del	p.Arg904LysfsTer7	p.R904Kfs*7	ENST00000257430	NM_000038.5	904	AGa/a																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	41	345	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900983	114900984	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0066459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	80	541	0	ENST00000543371.1:c.598dup	p.Leu200ProfsTer10	p.L200Pfs*10	ENST00000543371	NM_001198531.1	198	cac/caCc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591853	48591853	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	15	550	0	ENST00000342988.3:c.1016T>G	p.Phe339Cys	p.F339C	ENST00000342988	NM_005359.5	339	tTt/tGt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969405	44969405	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	252	196	0	ENST00000377967.4:c.4087C>T	p.Arg1363Ter	p.R1363*	ENST00000377967	NM_021140.2	1363	Cga/Tga																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44514831	44514831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	328	473	0	ENST00000291552.4:c.416C>T	p.Pro139Leu	p.P139L	ENST00000291552	NM_006758.2	139	cCg/cTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610087	10610087	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	304	497	0	ENST00000171111.5:c.623A>T	p.Tyr208Phe	p.Y208F	ENST00000171111	NM_203500.1	208	tAc/tTc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44515820	44515820	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	226	358	0	ENST00000291552.4:c.233A>G	p.Tyr78Cys	p.Y78C	ENST00000291552	NM_006758.2	78	tAt/tGt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31448708	31448708	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	215	363	0	ENST00000344624.3:c.2828A>T	p.Asn943Ile	p.N943I	ENST00000344624		943	aAc/aTc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573225	64573226	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	CA			P-0066732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	302	493	1	ENST00000337652.1:c.1081_1082delinsTG	p.Glu361Ter	p.E361*	ENST00000337652	NM_130803.2	361	GAa/TGa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375951	118375951	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	77	552	0	ENST00000534358.1:c.9344C>G	p.Pro3115Arg	p.P3115R	ENST00000534358	NM_005933.3	3115	cCc/cGc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287607	33287607	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066732-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	309	445	0	ENST00000374542.5:c.1490del	p.Met497SerfsTer31	p.M497Sfs*31	ENST00000374542	NM_001141970.1	497	aTg/ag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115435	115115437	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-	rs1319662056		P-0066733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	103	383	0	ENST00000257566.3:c.889_891del	p.Asn297del	p.N297del	ENST00000257566	NM_016569.3	297	AAC/-																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711875	89711875	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587782603		P-0066733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	86	330	0	ENST00000371953.3:c.493G>A	p.Gly165Arg	p.G165R	ENST00000371953	NM_000314.4	165	Gga/Aga																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417861	138417861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	167	322	0	ENST00000289153.2:c.1658A>G	p.Asn553Ser	p.N553S	ENST00000289153	NM_006219.2	553	aAt/aGt																																																																															
HGF	3082	MSKCC	GRCh37	7	81331979	81331979	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763933267		P-0066733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	78	372	0	ENST00000222390.5:c.2105G>A	p.Arg702His	p.R702H	ENST00000222390	NM_000601.4	702	cGt/cAt																																																																															
ALK	238	MSKCC	GRCh37	2	29449874	29449874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	157	604	0	ENST00000389048.3:c.2981A>G	p.Glu994Gly	p.E994G	ENST00000389048	NM_004304.4	994	gAa/gGa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436673	52436673	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066733-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	130	525	1	ENST00000460680.1:c.2001G>T	p.Arg667Ser	p.R667S	ENST00000460680	NM_004656.3	667	agG/agT																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs193920894		P-0066734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	124	409	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577586	7577586	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			74	90	326	0	ENST00000269305.4:c.695T>G	p.Ile232Ser	p.I232S	ENST00000269305	NM_001126112.2	232	aTc/aGc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685268	89685268	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0066737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			52	105	245	0	ENST00000371953.3:c.165-2A>T		p.X55_splice	ENST00000371953	NM_000314.4	55																																																																																
TEK	7010	MSKCC	GRCh37	9	27206761	27206761	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376225163		P-0066737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	96	357	0	ENST00000380036.4:c.2546G>A	p.Arg849Gln	p.R849Q	ENST00000380036	NM_000459.3	849	cGg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878982	151878982	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	140	468	0	ENST00000262189.6:c.5963C>G	p.Pro1988Arg	p.P1988R	ENST00000262189	NM_170606.2	1988	cCt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066757-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	53	325	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0066757-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	132	563	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211899	36211899	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066757-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			712	74	598	5	ENST00000222270.7:c.1656del	p.Lys553AsnfsTer52	p.K553Nfs*52	ENST00000222270	NM_014727.1	550	gaC/ga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163587	32163587	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1191585262		P-0066757-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			729	130	498	0	ENST00000375023.3:c.5639G>C	p.Arg1880Pro	p.R1880P	ENST00000375023	NM_004557.3	1880	cGg/cCg																																																																															
ATRX	546	MSKCC	GRCh37	X	76890149	76890150	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0066757-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	59	396	0	ENST00000373344.5:c.4744dup	p.Thr1582AsnfsTer19	p.T1582Nfs*19	ENST00000373344	NM_000489.3	1582	aca/aAca																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795008	242795008	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066757-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	95	620	0	ENST00000334409.5:c.201G>T	p.Trp67Cys	p.W67C	ENST00000334409	NM_005018.2	67	tgG/tgT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0066761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	65	295	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117708999	117708999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34203286		P-0066761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	25	489	0	ENST00000368508.3:c.1958C>T	p.Ser653Phe	p.S653F	ENST00000368508	NM_002944.2	653	tCt/tTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045541	47045541	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	39	698	0	ENST00000329236.7:c.2274G>T	p.Arg758Ser	p.R758S	ENST00000329236	NM_001204466.1	758	agG/agT																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939259	71939259	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771645618		P-0066775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	31	596	0	ENST00000298229.2:c.208C>T	p.Arg70Cys	p.R70C	ENST00000298229	NM_001567.3	70	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	56	320	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828461	72828461	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139821312		P-0066775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	68	530	0	ENST00000268489.5:c.8120C>T	p.Ala2707Val	p.A2707V	ENST00000268489	NM_006885.3	2707	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131691026		P-0066775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	73	545	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0066775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	17	236	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68930087	68930087	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	12	356	0	ENST00000288368.4:c.148T>G	p.Leu50Val	p.L50V	ENST00000288368	NM_024870.2	50	Tta/Gta																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126334	5126334	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0066775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	24	314	0	ENST00000381652.3:c.3179A>G	p.Glu1060Gly	p.E1060G	ENST00000381652	NM_004972.3	1060	gAa/gGa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389399	8389399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	24	325	0	ENST00000356435.5:c.4219G>A	p.Gly1407Arg	p.G1407R	ENST00000356435		1407	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0066779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	105	438	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0066779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	96	431	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174418	11174418	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	116	364	0	ENST00000361445.4:c.7257A>T	p.Glu2419Asp	p.E2419D	ENST00000361445	NM_004958.3	2419	gaA/gaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0066779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	44	293	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416680	121416680	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	67	488	0	ENST00000257555.6:c.109C>G	p.Leu37Val	p.L37V	ENST00000257555		37	Ctc/Gtc																																																																															
APC	324	MSKCC	GRCh37	5	112175539	112175540	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATTAT			P-0066779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	105	469	0	ENST00000257430.4:c.4250_4254dup	p.Ser1419LeufsTer2	p.S1419Lfs*2	ENST00000257430	NM_000038.5	1416	-/ATTAT																																																																															
BRD4	23476	MSKCC	GRCh37	19	15383673	15383673	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066779-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	23	477	0	ENST00000263377.2:c.238G>T	p.Ala80Ser	p.A80S	ENST00000263377	NM_058243.2	80	Gca/Tca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717719	89717720	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-	rs780264945		P-0066780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	139	203	0	ENST00000371953.3:c.750_751del	p.Cys250TrpfsTer2	p.C250Wfs*2	ENST00000371953	NM_000314.4	248	ccTGtg/cctg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385153	41385153	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776806194		P-0066780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	27	305	0	ENST00000373198.4:c.808C>T	p.Arg270Cys	p.R270C	ENST00000373198	NM_133170.3	270	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0066780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	109	315	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
KDR	3791	MSKCC	GRCh37	4	55948770	55948770	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368229220		P-0066780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	125	263	0	ENST00000263923.4:c.3695G>A	p.Arg1232Gln	p.R1232Q	ENST00000263923	NM_002253.2	1232	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0066780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	74	301	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0066780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	371	408	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522414	176522414	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	301	366	0	ENST00000292408.4:c.1603A>G	p.Asn535Asp	p.N535D	ENST00000292408	NM_213647.1	535	Aac/Gac																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522551	176522551	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774571806		P-0066780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	300	457	2	ENST00000292408.4:c.1648G>A	p.Val550Met	p.V550M	ENST00000292408	NM_213647.1	550	Gtg/Atg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405827	157405827	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373508866		P-0066780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	169	411	0	ENST00000346085.5:c.2069C>T	p.Thr690Met	p.T690M	ENST00000346085	NM_020732.3	690	aCg/aTg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737819	145737819	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750261857		P-0066780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	160	459	0	ENST00000428558.2:c.3011G>A	p.Arg1004Gln	p.R1004Q	ENST00000428558	NM_004260.3	1004	cGg/cAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390962	139390962	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs560981171		P-0066780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	164	516	0	ENST00000277541.6:c.7229C>T	p.Pro2410Leu	p.P2410L	ENST00000277541	NM_017617.3	2410	cCg/cTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120461957	120461957	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	147	353	0	ENST00000256646.2:c.5759C>G	p.Ala1920Gly	p.A1920G	ENST00000256646	NM_024408.3	1920	gCt/gGt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713835	30713835	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	188	493	1	ENST00000359013.4:c.1235T>C	p.Val412Ala	p.V412A	ENST00000359013	NM_001024847.2	412	gTg/gCg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430305	181430305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	82	231	0	ENST00000325404.1:c.157C>T	p.Arg53Cys	p.R53C	ENST00000325404	NM_003106.3	53	Cgc/Tgc																																																																															
IRF4	3662	MSKCC	GRCh37	6	401726	401726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	110	518	0	ENST00000380956.4:c.1048C>A	p.Leu350Met	p.L350M	ENST00000380956	NM_001195286.1	350	Ctg/Atg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0066782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	275	260	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0066782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	381	448	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640329	3640329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1189	293	390	1	ENST00000294008.3:c.3310C>T	p.Arg1104Trp	p.R1104W	ENST00000294008	NM_032444.2	1104	Cgg/Tgg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181784	56181785	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0066782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	193	259	0	ENST00000399503.3:c.4011dup	p.Tyr1338IlefsTer11	p.Y1338Ifs*11	ENST00000399503	NM_005921.1	1336	-/A																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438196	110438196	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	199	357	0	ENST00000375856.3:c.205C>T	p.Gln69Ter	p.Q69*	ENST00000375856	NM_003749.2	69	Caa/Taa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181846	56181847	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0066782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	86	273	0	ENST00000399503.3:c.4071_4072del	p.Ser1358ValfsTer4	p.S1358Vfs*4	ENST00000399503	NM_005921.1	1357	cTT/c																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859435	151859435	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0066782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	465	460	0	ENST00000262189.6:c.11227A>T	p.Lys3743Ter	p.K3743*	ENST00000262189	NM_170606.2	3743	Aag/Tag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137273	64137273	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	270	428	0	ENST00000334205.4:c.1707del	p.Cys570AlafsTer32	p.C570Afs*32	ENST00000334205	NM_003942.2	569	Ccc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0066848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	222	443	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085839	16085839	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372079635		P-0066848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	216	450	0	ENST00000281043.3:c.1015G>A	p.Val339Met	p.V339M	ENST00000281043	NM_005378.4	339	Gtg/Atg																																																																															
AXL	558	MSKCC	GRCh37	19	41745214	41745214	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750029623		P-0066848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	162	308	0	ENST00000301178.4:c.1280G>A	p.Arg427His	p.R427H	ENST00000301178	NM_021913.4	427	cGc/cAc																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630724	67630724	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	129	372	0	ENST00000272342.5:c.910G>C	p.Ala304Pro	p.A304P	ENST00000272342	NM_019002.3	304	Gct/Cct																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10264991	10264991	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753503985		P-0066848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	206	369	0	ENST00000340748.4:c.1949G>A	p.Arg650His	p.R650H	ENST00000340748		650	cGc/cAc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956685	93956685	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	153	309	0	ENST00000369303.4:c.2551G>C	p.Glu851Gln	p.E851Q	ENST00000369303	NM_004440.3	851	Gaa/Caa																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0066851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	193	554	2	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0066851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	113	314	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0066851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	135	345	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913273		P-0066851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	43	242	0	ENST00000263967.3:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000263967	NM_006218.2	542	Gaa/Caa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	403	537	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0066851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	234	426	0	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71941014	71941014	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202155977		P-0066851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	209	635	0	ENST00000298229.2:c.890C>T	p.Pro297Leu	p.P297L	ENST00000298229	NM_001567.3	297	cCg/cTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120255	70120256	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0066851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	204	563	0	ENST00000245479.2:c.1258dup	p.Tyr420LeufsTer158	p.Y420Lfs*158	ENST00000245479	NM_000346.3	419	-/T																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	37	355	0	ENST00000256078.4:c.437C>A	p.Ala146Glu	p.A146E	ENST00000256078	NM_033360.2	146	gCa/gAa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117872	70117872	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	275	494	0	ENST00000245479.2:c.340G>T	p.Val114Leu	p.V114L	ENST00000245479	NM_000346.3	114	Gtg/Ttg																																																																															
APC	324	MSKCC	GRCh37	5	112173775	112173775	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	128	473	0	ENST00000257430.4:c.2484del	p.Thr829GlnfsTer13	p.T829Qfs*13	ENST00000257430	NM_000038.5	828	acT/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0066852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	360	337	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112174878	112174878	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			50	100	397	0	ENST00000257430.4:c.3587C>A	p.Ser1196Ter	p.S1196*	ENST00000257430	NM_000038.5	1196	tCa/tAa																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643791	38643791	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752958999		P-0066852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	80	350	0	ENST00000299084.4:c.1261G>A	p.Val421Ile	p.V421I	ENST00000299084	NM_152594.2	421	Gtc/Atc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675615	30675616	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0066852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	147	454	0	ENST00000376406.3:c.2740_2741delinsTT	p.Ala914Leu	p.A914L	ENST00000376406	NM_014641.2	914	GCa/TTa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275633	41275633	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	132	350	0	ENST00000349496.5:c.1528A>C	p.Thr510Pro	p.T510P	ENST00000349496	NM_001904.3	510	Act/Cct																																																																															
MGA	23269	MSKCC	GRCh37	15	42046738	42046738	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs933034569		P-0066852-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	84	356	1	ENST00000219905.7:c.7112C>T	p.Ala2371Val	p.A2371V	ENST00000219905	NM_001164273.1	2371	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0066853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	17	335	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112175271	112175272	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0066859-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	50	369	0	ENST00000257430.4:c.3982_3983del	p.Gln1328AlafsTer3	p.Q1328Afs*3	ENST00000257430	NM_000038.5	1327	tCA/t																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911561	114911561	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066859-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	44	385	0	ENST00000543371.1:c.1079A>C	p.Tyr360Ser	p.Y360S	ENST00000543371	NM_001198531.1	360	tAt/tCt																																																																															
HGF	3082	MSKCC	GRCh37	7	81381471	81381471	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs558400297		P-0066859-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	24	301	0	ENST00000222390.5:c.590G>A	p.Arg197His	p.R197H	ENST00000222390	NM_000601.4	197	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577499	7577500	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0066859-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	83	375	0	ENST00000269305.4:c.781dup	p.Ser261LysfsTer3	p.S261Kfs*3	ENST00000269305	NM_001126112.2	261	agt/aAgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0066860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	62	582	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50483706	50483706	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	54	374	0	ENST00000394963.4:c.811C>T	p.Gln271Ter	p.Q271*	ENST00000394963	NM_003076.4	271	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	41	212	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89791020	89791020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	57	273	0	ENST00000336032.3:c.407G>A	p.Gly136Glu	p.G136E	ENST00000336032	NM_006813.2	136	gGa/gAa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81972440	81972440	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs891516801		P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	87	440	0	ENST00000359376.3:c.3233G>A	p.Arg1078Gln	p.R1078Q	ENST00000359376	NM_002661.3	1078	cGa/cAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831831	72831831	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	86	476	0	ENST00000268489.5:c.4750C>T	p.Gln1584Ter	p.Q1584*	ENST00000268489	NM_006885.3	1584	Cag/Tag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198262833	198262833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	31	301	0	ENST00000335508.6:c.3142G>A	p.Glu1048Lys	p.E1048K	ENST00000335508	NM_012433.2	1048	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579406	7579406	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	230	511	0	ENST00000269305.4:c.281C>G	p.Ser94Ter	p.S94*	ENST00000269305	NM_001126112.2	94	tCa/tGa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845816	72845816	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs199992763		P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	86	471	0	ENST00000268489.5:c.3651C>G	p.Ile1217Met	p.I1217M	ENST00000268489	NM_006885.3	1217	atC/atG																																																																															
PGR	5241	MSKCC	GRCh37	11	100998273	100998273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	66	335	0	ENST00000325455.5:c.1529C>T	p.Ala510Val	p.A510V	ENST00000325455	NM_001202474.3	510	gCg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845580	151845580	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1287135873		P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	101	456	0	ENST00000262189.6:c.13432C>T	p.Arg4478Ter	p.R4478*	ENST00000262189	NM_170606.2	4478	Cga/Tga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687120	37687120	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1158026447		P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	104	407	0	ENST00000447079.4:c.4024G>C	p.Asp1342His	p.D1342H	ENST00000447079	NM_015083.1	1342	Gat/Cat																																																																															
TERT	7015	MSKCC	GRCh37	5	1282725	1282725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	42	361	0	ENST00000310581.5:c.1588C>T	p.Pro530Ser	p.P530S	ENST00000310581	NM_198253.2	530	Ccg/Tcg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178130	56178130	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	64	423	0	ENST00000399503.3:c.3103G>C	p.Glu1035Gln	p.E1035Q	ENST00000399503	NM_005921.1	1035	Gaa/Caa																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230486829	230486829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	57	376	0	ENST00000525115.1:c.562G>A	p.Glu188Lys	p.E188K	ENST00000525115		188	Gaa/Aaa																																																																															
USP8	9101	MSKCC	GRCh37	15	50763829	50763829	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	45	283	0	ENST00000307179.4:c.687-1G>C		p.X229_splice	ENST00000307179		229																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15290978	15290978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	62	438	0	ENST00000263388.2:c.3232G>A	p.Gly1078Ser	p.G1078S	ENST00000263388	NM_000435.2	1078	Ggt/Agt																																																																															
REST	5978	MSKCC	GRCh37	4	57797771	57797771	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	53	403	0	ENST00000309042.7:c.2747C>G	p.Ser916Cys	p.S916C	ENST00000309042	NM_005612.4	916	tCt/tGt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289211	33289211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	61	379	0	ENST00000374542.5:c.341C>T	p.Ser114Phe	p.S114F	ENST00000374542	NM_001141970.1	114	tCt/tTt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646726	23646726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	29	384	0	ENST00000261584.4:c.1141C>T	p.Leu381Phe	p.L381F	ENST00000261584	NM_024675.3	381	Ctt/Ttt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570272	95570272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	25	379	0	ENST00000343455.3:c.3461G>A	p.Arg1154Lys	p.R1154K	ENST00000343455	NM_177438.2	1154	aGa/aAa																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858405	27858405	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1055	175	515	0	ENST00000359303.2:c.166C>G	p.Gln56Glu	p.Q56E	ENST00000359303	NM_003535.2	56	Cag/Gag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11297985	11297985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	96	382	1	ENST00000361445.4:c.2123G>A	p.Arg708Gln	p.R708Q	ENST00000361445	NM_004958.3	708	cGg/cAg																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182665418	182665418	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	19	255	0	ENST00000292782.4:c.523C>G	p.Leu175Val	p.L175V	ENST00000292782	NM_020640.2	175	Cta/Gta																																																																															
ALK	238	MSKCC	GRCh37	2	29519801	29519801	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	40	386	0	ENST00000389048.3:c.1770G>C	p.Leu590Phe	p.L590F	ENST00000389048	NM_004304.4	590	ttG/ttC																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260041	16260041	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	213	491	0	ENST00000375759.3:c.7306C>T	p.Gln2436Ter	p.Q2436*	ENST00000375759	NM_015001.2	2436	Cag/Tag																																																																															
CCND2	894	MSKCC	GRCh37	12	4385378	4385378	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	89	410	0	ENST00000261254.3:c.403G>T	p.Glu135Ter	p.E135*	ENST00000261254	NM_001759.3	135	Gag/Tag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347281	89347281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	49	439	0	ENST00000301030.4:c.5669C>T	p.Pro1890Leu	p.P1890L	ENST00000301030	NM_001256183.1	1890	cCt/cTt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687112	37687112	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	94	402	0	ENST00000447079.4:c.4016G>T	p.Gly1339Val	p.G1339V	ENST00000447079	NM_015083.1	1339	gGa/gTa																																																																															
LYN	4067	MSKCC	GRCh37	8	56879296	56879296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	51	315	0	ENST00000519728.1:c.813G>T	p.Lys271Asn	p.K271N	ENST00000519728	NM_002350.3	271	aaG/aaT																																																																															
EP300	2033	MSKCC	GRCh37	22	41573760	41573760	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149080402		P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	55	483	0	ENST00000263253.7:c.6045G>A	p.Met2015Ile	p.M2015I	ENST00000263253	NM_001429.3	2015	atG/atA																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873688	35873688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	29	284	0	ENST00000216797.5:c.163G>A	p.Glu55Lys	p.E55K	ENST00000216797	NM_020529.2	55	Gag/Aag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727466	88727466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	61	423	0	ENST00000360948.2:c.313C>A	p.Leu105Ile	p.L105I	ENST00000360948	NM_001012338.2	105	Ctt/Att																																																																															
ROS1	6098	MSKCC	GRCh37	6	117658361	117658361	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0066862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	21	421	0	ENST00000368508.3:c.5222C>A	p.Ser1741Ter	p.S1741*	ENST00000368508	NM_002944.2	1741	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782596		P-0064012-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	76	522	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47641513	47641513	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0064012-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	107	336	0	ENST00000233146.2:c.898A>C	p.Met300Leu	p.M300L	ENST00000233146	NM_000251.2	300	Atg/Ctg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288194	33288199	+	inframe_deletion	In_Frame_Del	DEL	GAGTGG	GAGTGG	-			P-0064012-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	48	506	0	ENST00000374542.5:c.1209_1214del	p.His404_Ser405del	p.H404_S405del	ENST00000374542	NM_001141970.1	403	tcCCACTCt/tct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023447	27023447	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064558-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	172	305	0	ENST00000324856.7:c.553C>T	p.Gln185Ter	p.Q185*	ENST00000324856	NM_006015.4	185	Cag/Tag																																																																															
TERT	7015	MSKCC	GRCh37	5	1255456	1255456	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374968697		P-0064558-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	410	318	0	ENST00000310581.5:c.3103G>A	p.Val1035Ile	p.V1035I	ENST00000310581	NM_198253.2	1035	Gtc/Atc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396490	396490	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0064558-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	183	309	0	ENST00000262320.3:c.536del	p.Pro179LeufsTer63	p.P179Lfs*63	ENST00000262320	NM_003502.3	179	cCt/ct																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453138	+	protein_altering_variant	In_Frame_Del	DEL	TCACT	TCACT	CA			P-0064558-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	171	238	1	ENST00000288602.6:c.1797_1801delinsTG	p.Val600_Lys601delinsGlu	p.V600_K601delinsE	ENST00000288602	NM_004333.4	599	acAGTGAaa/acTGaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0065256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			281	113	424	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061313	38061313	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1204900727		P-0065256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			674	133	517	0	ENST00000250448.2:c.676G>A	p.Asp226Asn	p.D226N	ENST00000250448	NM_004496.3	226	Gac/Aac																																																																															
USP8	9101	MSKCC	GRCh37	15	50782647	50782647	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			587	88	495	0	ENST00000307179.4:c.2159C>A	p.Pro720Gln	p.P720Q	ENST00000307179		720	cCa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577587	7577587	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	23	392	0	ENST00000269305.4:c.694A>T	p.Ile232Phe	p.I232F	ENST00000269305	NM_001126112.2	232	Atc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0065911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	17	268	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032565	12032565	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065911-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	11	313	0	ENST00000353533.5:c.1003del	p.Glu335AsnfsTer28	p.E335Nfs*28	ENST00000353533	NM_003010.3	334	aGg/ag																																																																															
RB1	5925	MSKCC	GRCh37	13	48937028	48937028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066017-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			204	104	371	0	ENST00000267163.4:c.796C>T	p.Gln266Ter	p.Q266*	ENST00000267163	NM_000321.2	266	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0066017-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			402	118	383	0	ENST00000269305.4:c.375+1del		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0066017-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	62	194	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332910	153332910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066017-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			276	57	397	0	ENST00000281708.4:c.46G>A	p.Gly16Arg	p.G16R	ENST00000281708	NM_033632.3	16	Gga/Aga																																																																															
SUFU	51684	MSKCC	GRCh37	10	104353441	104353441	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066017-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			314	117	420	0	ENST00000369902.3:c.646G>T	p.Gly216Trp	p.G216W	ENST00000369902	NM_016169.3	216	Ggg/Tgg																																																																															
IGF2	3481	MSKCC	GRCh37	11	2156613	2156613	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066017-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	111	453	0	ENST00000434045.2:c.309C>A	p.Asp103Glu	p.D103E	ENST00000434045	NM_001127598.1	103	gaC/gaA																																																																															
SESN3	143686	MSKCC	GRCh37	11	94917602	94917602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066017-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			293	44	430	0	ENST00000536441.1:c.919C>T	p.His307Tyr	p.H307Y	ENST00000536441	NM_144665.3	307	Cat/Tat																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211823	36211823	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066017-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			436	525	501	0	ENST00000222270.7:c.1574G>T	p.Arg525Leu	p.R525L	ENST00000222270	NM_014727.1	525	cGg/cTg																																																																															
PARK2	5071	MSKCC	GRCh37	6	161771195	161771195	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs961239925		P-0066017-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	76	343	0	ENST00000366898.1:c.1334G>A	p.Trp445Ter	p.W445*	ENST00000366898	NM_004562.2	445	tGg/tAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs137853076		P-0066410-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	57	442	0	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag																																																																															
IDH2	3418	MSKCC	GRCh37	15	90630476	90630476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066410-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			442	53	487	0	ENST00000330062.3:c.835G>A	p.Asp279Asn	p.D279N	ENST00000330062	NM_002168.2	279	Gac/Aac																																																																															
ATM	472	MSKCC	GRCh37	11	108224493	108224493	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0066410-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			311	33	352	0	ENST00000278616.4:c.8672G>T	p.Gly2891Val	p.G2891V	ENST00000278616	NM_000051.3	2891	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0066410-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			259	39	273	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0066410-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			305	54	391	1	ENST00000265081.6:c.1141A>T	p.Lys381Ter	p.K381*	ENST00000265081	NM_002439.4	381	Aaa/Taa																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1331478	1331478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066410-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			383	57	378	0	ENST00000381566.1:c.50G>T	p.Gly17Val	p.G17V	ENST00000381566		17	gGc/gTc																																																																															
KDR	3791	MSKCC	GRCh37	4	55971004	55971004	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066410-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			403	76	416	0	ENST00000263923.4:c.1793T>G	p.Leu598Trp	p.L598W	ENST00000263923	NM_002253.2	598	tTg/tGg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39930934	39930934	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066410-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			193	22	300	0	ENST00000378444.4:c.3007T>A	p.Leu1003Ile	p.L1003I	ENST00000378444	NM_001123385.1	1003	Tta/Ata																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18439817	18439817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066410-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			220	27	344	0	ENST00000266497.5:c.715C>A	p.Gln239Lys	p.Q239K	ENST00000266497		239	Caa/Aaa																																																																															
MED12	9968	MSKCC	GRCh37	X	70357585	70357585	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066410-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			486	69	530	1	ENST00000374080.3:c.5836C>A	p.Pro1946Thr	p.P1946T	ENST00000374080		1946	Cct/Act																																																																															
PREX2	80243	MSKCC	GRCh37	8	69012079	69012079	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0066410-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			235	115	287	0	ENST00000288368.4:c.2715+1G>C		p.X905_splice	ENST00000288368	NM_024870.2	905																																																																																
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0066620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	182	571	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0066620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	197	460	2	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245265	53245265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	170	301	0	ENST00000375401.3:c.772C>T	p.Arg258Trp	p.R258W	ENST00000375401	NM_004187.3	258	Cgg/Tgg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444306	50444306	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1265571297		P-0066620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			760	78	589	0	ENST00000331340.3:c.236C>T	p.Ala79Val	p.A79V	ENST00000331340	NM_006060.4	79	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175475	112175475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	241	574	0	ENST00000257430.4:c.4184del	p.Ser1395IlefsTer20	p.S1395Ifs*20	ENST00000257430	NM_000038.5	1395	aGt/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0066620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	75	405	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TEK	7010	MSKCC	GRCh37	9	27197595	27197595	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0066620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	68	375	0	ENST00000380036.4:c.1907A>T	p.Asp636Val	p.D636V	ENST00000380036	NM_000459.3	636	gAc/gTc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200200	138200200	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	201	691	0	ENST00000237289.4:c.1618T>G	p.Phe540Val	p.F540V	ENST00000237289	NM_001270507.1	540	Ttc/Gtc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027493	48027493	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749918474		P-0066620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	130	548	0	ENST00000234420.5:c.2371C>T	p.Arg791Cys	p.R791C	ENST00000234420	NM_000179.2	791	Cgt/Tgt																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792404	33793160	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTGCTTGGCCTTGTCGCGGCTCTTGCGCACCGCGATGTTGTTGCGCTCGCGCCGCACCCGGTACTCGTTGCTGTTCTTGTCCACCGACTTCTTGGCCTTGCCCGCGCCGCTGCCGCCACTCGCGCGGAGGTCGGGGTGCGCGGCGCCCAGCCCCTTGAGCGCGCTGCCAGGGCCCGGCAGGCCGGCGGCACCGAGCGCGGGCGCGGGGTGCGGGCTGGGCACGGGCGTGGGCGGCGGCGTGGGGTGACCGGGCTGCAGGTGCATGGTGGTCTGGCCGCAGTGCGCGATCTGGAACTGCAGGTGCGGGGCGGCCAGGTGCGCGGGCGGCGGGTGCGGGTGCGGGTGCGAGGGCGGCGGCGGCGGCGGCGGCTGGTAAGGGAAGAGGCCGGCCAGCGCCAGCTGCTTGGCTTCATCCTCCTCGCGGGGCTCCTGCTTGATCACCAGCGGCCGCAGCGCCGGCGCCCCGACGCGCTCGTACAGGGGCTCCAGCCTGCCGTCCAGGTAGCCGGCGGCCGCGCAGCCGTAGCCGGGCGGGGGCCCGTGCGCTCCCCCGGGCATGACGGCGCCGCCGGGGCCCGCGGGCGCGCCCGGGTAGTCAAAGTCGCCGCCGCCGCCGCCGCCCGTGGGGCCCACGGCCGCCTTGGCCTTCTCCTGCTGCCGGCTGTGCTGGAACAGGTCGGCCAGGAACTCGTCGTTGAAGGCGGCCGGGTCGATGTAGGCGCTGATGTCGATGGACGTCTCGTGCTCGCAGATGC	CGCTGCTTGGCCTTGTCGCGGCTCTTGCGCACCGCGATGTTGTTGCGCTCGCGCCGCACCCGGTACTCGTTGCTGTTCTTGTCCACCGACTTCTTGGCCTTGCCCGCGCCGCTGCCGCCACTCGCGCGGAGGTCGGGGTGCGCGGCGCCCAGCCCCTTGAGCGCGCTGCCAGGGCCCGGCAGGCCGGCGGCACCGAGCGCGGGCGCGGGGTGCGGGCTGGGCACGGGCGTGGGCGGCGGCGTGGGGTGACCGGGCTGCAGGTGCATGGTGGTCTGGCCGCAGTGCGCGATCTGGAACTGCAGGTGCGGGGCGGCCAGGTGCGCGGGCGGCGGGTGCGGGTGCGGGTGCGAGGGCGGCGGCGGCGGCGGCGGCTGGTAAGGGAAGAGGCCGGCCAGCGCCAGCTGCTTGGCTTCATCCTCCTCGCGGGGCTCCTGCTTGATCACCAGCGGCCGCAGCGCCGGCGCCCCGACGCGCTCGTACAGGGGCTCCAGCCTGCCGTCCAGGTAGCCGGCGGCCGCGCAGCCGTAGCCGGGCGGGGGCCCGTGCGCTCCCCCGGGCATGACGGCGCCGCCGGGGCCCGCGGGCGCGCCCGGGTAGTCAAAGTCGCCGCCGCCGCCGCCGCCCGTGGGGCCCACGGCCGCCTTGGCCTTCTCCTGCTGCCGGCTGTGCTGGAACAGGTCGGCCAGGAACTCGTCGTTGAAGGCGGCCGGGTCGATGTAGGCGCTGATGTCGATGGACGTCTCGTGCTCGCAGATGC	-			P-0066620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	131	561	0	ENST00000498907.2:c.161_917del	p.Gly54AlafsTer12	p.G54Afs*12	ENST00000498907	NM_004364.3	54	gGCATCTGCGAGCACGAGACGTCCATCGACATCAGCGCCTACATCGACCCGGCCGCCTTCAACGACGAGTTCCTGGCCGACCTGTTCCAGCACAGCCGGCAGCAGGAGAAGGCCAAGGCGGCCGTGGGCCCCACGGGCGGCGGCGGCGGCGGCGACTTTGACTACCCGGGCGCGCCCGCGGGCCCCGGCGGCGCCGTCATGCCCGGGGGAGCGCACGGGCCCCCGCCCGGCTACGGCTGCGCGGCCGCCGGCTACCTGGACGGCAGGCTGGAGCCCCTGTACGAGCGCGTCGGGGCGCCGGCGCTGCGGCCGCTGGTGATCAAGCAGGAGCCCCGCGAGGAGGATGAAGCCAAGCAGCTGGCGCTGGCCGGCCTCTTCCCTTACCAGCCGCCGCCGCCGCCGCCGCCCTCGCACCCGCACCCGCACCCGCCGCCCGCGCACCTGGCCGCCCCGCACCTGCAGTTCCAGATCGCGCACTGCGGCCAGACCACCATGCACCTGCAGCCCGGTCACCCCACGCCGCCGCCCACGCCCGTGCCCAGCCCGCACCCCGCGCCCGCGCTCGGTGCCGCCGGCCTGCCGGGCCCTGGCAGCGCGCTCAAGGGGCTGGGCGCCGCGCACCCCGACCTCCGCGCGAGTGGCGGCAGCGGCGCGGGCAAGGCCAAGAAGTCGGTGGACAAGAACAGCAACGAGTACCGGGTGCGGCGCGAGCGCAACAACATCGCGGTGCGCAAGAGCCGCGACAAGGCCAAGCAGCGc/gc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246670462	246670462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	160	489	0	ENST00000388985.4:c.58G>T	p.Ala20Ser	p.A20S	ENST00000388985		20	Gcc/Tcc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057053	180057053	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369974304		P-0066620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	179	672	0	ENST00000261937.6:c.566G>A	p.Arg189Gln	p.R189Q	ENST00000261937	NM_182925.4	189	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575228	48575228	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0066620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	72	337	0	ENST00000342988.3:c.423del	p.Ile141MetfsTer6	p.I141Mfs*6	ENST00000342988	NM_005359.5	141	aTt/at																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71101756	71101756	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0066665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	150	408	1	ENST00000318789.4:c.442A>T	p.Lys148Ter	p.K148*	ENST00000318789	NM_032682.5	148	Aaa/Taa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41201182	41201182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	88	444	0	ENST00000357654.3:c.5362G>A	p.Gly1788Ser	p.G1788S	ENST00000357654	NM_007294.3	1788	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0066668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	145	393	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0066668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	111	264	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0066668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	176	369	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0066668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	134	336	0	ENST00000269305.4:c.994-1G>T		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157100108	157100132	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCAGGAGGCGGCGGCGGCGGCG	GCAGCAGGAGGCGGCGGCGGCGGCG	-			P-0066668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	125	486	0	ENST00000346085.5:c.1047_1071del	p.Ala350MetfsTer11	p.A350Mfs*11	ENST00000346085	NM_020732.3	349	GCAGCAGGAGGCGGCGGCGGCGGCGgc/gc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119734	70119736	+	frameshift_variant	Frame_Shift_Del	DEL	CAG	CAG	T			P-0066668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	128	288	0	ENST00000245479.2:c.736_738delinsT	p.Gln246SerfsTer5	p.Q246Sfs*5	ENST00000245479	NM_000346.3	246	CAG/T																																																																															
MET	4233	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0066689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	160	355	0	ENST00000397752.3:c.3028+2T>A		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
TP53	7157	MSKCC	GRCh37	17	7579349	7579349	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	68	335	0	ENST00000269305.4:c.338del	p.Phe113SerfsTer10	p.F113Sfs*10	ENST00000269305	NM_001126112.2	113	tTc/tc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47425014	47425014	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	70	351	0	ENST00000404338.3:c.3082A>G	p.Asn1028Asp	p.N1028D	ENST00000404338	NM_004491.4	1028	Aat/Gat																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123480553	123480553	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066689-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	72	350	0	ENST00000371139.4:c.61C>A	p.Leu21Ile	p.L21I	ENST00000371139	NM_001114937.2	21	Ctt/Att																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0066691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	182	452	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340407	8340407	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201651279		P-0066691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	191	509	0	ENST00000356435.5:c.5189G>A	p.Arg1730Gln	p.R1730Q	ENST00000356435		1730	cGg/cAg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857275	9857275	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1426934537		P-0066691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	55	565	0	ENST00000330684.3:c.4126C>T	p.Arg1376Cys	p.R1376C	ENST00000330684	NM_001134407.1	1376	Cgc/Tgc																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26046009	26046009	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	37	536	0	ENST00000540144.1:c.371A>G	p.Asp124Gly	p.D124G	ENST00000540144	NM_003531.2	124	gAt/gGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859942	151859942	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	215	579	0	ENST00000262189.6:c.10720del	p.Ser3574LeufsTer3	p.S3574Lfs*3	ENST00000262189	NM_170606.2	3574	Tct/ct																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24143175	24143175	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	193	600	0	ENST00000263121.7:c.407C>G	p.Pro136Arg	p.P136R	ENST00000263121	NM_003073.3	136	cCc/cGc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16052779	16052779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066691-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	140	187	0	ENST00000268712.3:c.895G>A	p.Ala299Thr	p.A299T	ENST00000268712	NM_006311.3	299	Gca/Aca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0066692-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	27	514	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578415	7578415	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066692-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	18	521	0	ENST00000269305.4:c.515T>A	p.Val172Asp	p.V172D	ENST00000269305	NM_001126112.2	172	gTt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591903	48591903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066692-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	32	468	0	ENST00000342988.3:c.1066C>T	p.Pro356Ser	p.P356S	ENST00000342988	NM_005359.5	356	Cct/Tct																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513200	106513200	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066692-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	25	383	0	ENST00000359195.3:c.2104G>C	p.Glu702Gln	p.E702Q	ENST00000359195	NM_002649.2	702	Gag/Cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0066692-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	22	327	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513316	106513316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066692-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	17	358	0	ENST00000359195.3:c.2220G>T	p.Glu740Asp	p.E740D	ENST00000359195	NM_002649.2	740	gaG/gaT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033189	69033189	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs769657897		P-0066692-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	23	366	0	ENST00000288368.4:c.3629G>T	p.Cys1210Phe	p.C1210F	ENST00000288368	NM_024870.2	1210	tGt/tTt																																																																															
RAF1	5894	MSKCC	GRCh37	3	12633264	12633264	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066692-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	24	348	0	ENST00000251849.4:c.1136T>G	p.Val379Gly	p.V379G	ENST00000251849	NM_002880.3	379	gTt/gGt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412735	63412736	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0066692-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	18	444	0	ENST00000330258.3:c.431dup	p.Thr145AspfsTer13	p.T145Dfs*13	ENST00000330258	NM_152424.3	144	aag/aaAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0066693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	155	382	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																															
GNAS	2778	MSKCC	GRCh37	20	57480495	57480495	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1422801076		P-0066693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1192	100	345	0	ENST00000371085.3:c.490G>A	p.Glu164Lys	p.E164K	ENST00000371085	NM_000516.4	164	Gaa/Aaa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412530	63412530	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	61	477	0	ENST00000330258.3:c.637C>T	p.Gln213Ter	p.Q213*	ENST00000330258	NM_152424.3	213	Cag/Tag																																																																															
WT1	7490	MSKCC	GRCh37	11	32456855	32456855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	73	357	0	ENST00000332351.3:c.37G>A	p.Ala13Thr	p.A13T	ENST00000332351	NM_024426.4	13	Gcg/Acg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433282	49433282	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1355857425		P-0066693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	118	438	0	ENST00000301067.7:c.8165C>G	p.Ala2722Gly	p.A2722G	ENST00000301067	NM_003482.3	2722	gCt/gGt																																																																															
GAB1	2549	MSKCC	GRCh37	4	144359634	144359634	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748539714		P-0066693-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	102	494	0	ENST00000262994.4:c.1076C>T	p.Thr359Met	p.T359M	ENST00000262994	NM_002039.3	359	aCg/aTg																																																																															
MAD2L2	10459	MSKCC	GRCh37	1	11736105	11736105	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	64	400	1	ENST00000235310.3:c.425del	p.Pro142GlnfsTer45	p.P142Qfs*45	ENST00000235310		142	cCa/ca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262680	16262680	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	26	448	1	ENST00000375759.3:c.9950del	p.Pro3317ArgfsTer83	p.P3317Rfs*83	ENST00000375759	NM_015001.2	3315	caC/ca																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936218	150936218	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs111660370		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	103	483	0	ENST00000271640.5:c.3669+1G>A		p.X1223_splice	ENST00000271640	NM_001145415.1	1223																																																																																
NTRK1	4914	MSKCC	GRCh37	1	156843643	156843643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	96	613	0	ENST00000524377.1:c.1069G>A	p.Gly357Ser	p.G357S	ENST00000524377	NM_002529.3	357	Ggc/Agc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740216	162740216	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775098890		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	108	543	1	ENST00000367921.3:c.1418G>A	p.Arg473His	p.R473H	ENST00000367921	NM_006182.2	473	cGc/cAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	93	382	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	114	559	5	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
ATM	472	MSKCC	GRCh37	11	108188136	108188136	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1800060		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	65	260	0	ENST00000278616.4:c.6235G>A	p.Val2079Ile	p.V2079I	ENST00000278616	NM_000051.3	2079	Gtc/Atc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	69	351	2	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
ARID2	196528	MSKCC	GRCh37	12	46298725	46298725	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	64	247	0	ENST00000334344.6:c.5372A>G	p.Lys1791Arg	p.K1791R	ENST00000334344	NM_152641.2	1791	aAg/aGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420913	49420913	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756017412		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	91	554	0	ENST00000301067.7:c.14836G>A	p.Val4946Ile	p.V4946I	ENST00000301067	NM_003482.3	4946	Gtc/Atc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434247	49434247	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	118	566	0	ENST00000301067.7:c.7306del	p.Cys2436AlafsTer49	p.C2436Afs*49	ENST00000301067	NM_003482.3	2436	Tgc/gc																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480010	50480010	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	105	475	0	ENST00000394963.4:c.249del	p.Asn84ThrfsTer79	p.N84Tfs*79	ENST00000394963	NM_003076.4	82	Ggg/gg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	76	351	5	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																															
MGA	23269	MSKCC	GRCh37	15	42058342	42058342	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201470885		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	92	478	0	ENST00000219905.7:c.8062G>A	p.Val2688Ile	p.V2688I	ENST00000219905	NM_001164273.1	2688	Gtc/Atc																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	73	425	9	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465391	99465391	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912429		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	95	423	0	ENST00000268035.6:c.2216G>A	p.Arg739Gln	p.R739Q	ENST00000268035	NM_000875.3	739	cGg/cAg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50828208	50828208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	105	506	0	ENST00000398568.2:c.2546G>A	p.Gly849Asp	p.G849D	ENST00000398568	NM_001042412.1	849	gGc/gAc																																																																															
CBFB	865	MSKCC	GRCh37	16	67132613	67132613	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	29	329	0	ENST00000412916.2:c.496G>A	p.Ala166Thr	p.A166T	ENST00000412916		166	Gca/Aca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762108866		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	88	524	2	ENST00000268489.5:c.10215dup	p.Gly3406ArgfsTer25	p.G3406Rfs*25	ENST00000268489	NM_006885.3	3405	-/C																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	126	580	0	ENST00000268489.5:c.5677_5678del	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	242	633	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	83	500	5	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099208	4099208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	97	382	0	ENST00000262948.5:c.910C>T	p.Pro304Ser	p.P304S	ENST00000262948	NM_030662.3	304	Ccc/Tcc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4123862	4123862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	90	348	0	ENST00000262948.5:c.11G>A	p.Arg4Gln	p.R4Q	ENST00000262948	NM_030662.3	4	cGg/cAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5240271	5240271	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	78	501	0	ENST00000357368.4:c.1643del	p.Pro548ArgfsTer37	p.P548Rfs*37	ENST00000357368	NM_002850.3	548	cCg/cg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311681	15311682	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGGCGG	rs1034616333		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	31	668	0	ENST00000263388.2:c.30_35dup	p.Arg12_Arg13dup	p.R12_R13dup	ENST00000263388	NM_000435.2	12	cgt/cgCCGCCGt																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731468	47731468	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1284528511		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	88	491	2	ENST00000449228.1:c.324del	p.Phe109SerfsTer120	p.F109Sfs*120	ENST00000449228	NM_001127240.2	108	ggG/gg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	88	587	2	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25497908	25497908	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1247178186		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	83	381	0	ENST00000264709.3:c.541C>T	p.Arg181Cys	p.R181C	ENST00000264709	NM_175629.2	181	Cgt/Tgt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523072	25523072	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369618387		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	118	508	0	ENST00000264709.3:c.113G>A	p.Arg38His	p.R38H	ENST00000264709	NM_175629.2	38	cGc/cAc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607487	46607487	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	112	554	2	ENST00000263734.3:c.1681del	p.Gln561SerfsTer7	p.Q561Sfs*7	ENST00000263734	NM_001430.4	559	aCc/ac																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	91	484	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
CASP8	841	MSKCC	GRCh37	2	202141605	202141605	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	54	453	0	ENST00000358485.4:c.893T>C	p.Ile298Thr	p.I298T	ENST00000358485	NM_001080125.1	298	aTc/aCc																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	95	456	0	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																																																															
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	102	366	0	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																															
PPARG	5468	MSKCC	GRCh37	3	12422842	12422842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	84	336	0	ENST00000287820.6:c.332C>T	p.Ala111Val	p.A111V	ENST00000287820	NM_015869.4	111	gCa/gTa																																																																															
KDR	3791	MSKCC	GRCh37	4	55976873	55976873	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750983015		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	89	415	1	ENST00000263923.4:c.1039C>T	p.Arg347Cys	p.R347C	ENST00000263923	NM_002253.2	347	Cgt/Tgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1266595	1266595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	95	457	0	ENST00000310581.5:c.2638G>A	p.Ala880Thr	p.A880T	ENST00000310581	NM_198253.2	880	Gcg/Acg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	77	417	1	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970916	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	59	334	0	ENST00000265081.6:c.1147_1148del	p.Lys383GlyfsTer20	p.K383Gfs*20	ENST00000265081	NM_002439.4	381	AAa/a																																																																															
APC	324	MSKCC	GRCh37	5	112173260	112173261	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	46	303	0	ENST00000257430.4:c.1974_1975del	p.Asn659GlnfsTer14	p.N659Qfs*14	ENST00000257430	NM_000038.5	657	AGa/a																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	79	349	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755445139		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	109	515	1	ENST00000261937.6:c.89dup	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910405	29910405	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	102	548	0	ENST00000376809.5:c.73+2T>C		p.X25_splice	ENST00000376809	NM_002116.7	25																																																																																
DAXX	1616	MSKCC	GRCh37	6	33286937	33286937	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	47	539	0	ENST00000374542.5:c.2000C>A	p.Pro667His	p.P667H	ENST00000374542	NM_001141970.1	667	cCc/cAc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005485	150005485	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	37	532	0	ENST00000253339.5:c.740C>A	p.Pro247His	p.P247H	ENST00000253339		247	cCt/cAt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152420067	152420067	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141662120		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	84	360	0	ENST00000206249.3:c.1754C>T	p.Thr585Met	p.T585M	ENST00000206249	NM_000125.3	585	aCg/aTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2952980	2952980	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376039195		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	90	443	0	ENST00000396946.4:c.2960C>T	p.Thr987Met	p.T987M	ENST00000396946	NM_032415.4	987	aCg/aTg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6045646	6045646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			59	17	71	0	ENST00000265849.7:c.40G>A	p.Ala14Thr	p.A14T	ENST00000265849	NM_000535.5	14	Gcc/Acc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468081	50468081	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	103	544	0	ENST00000331340.3:c.1316G>T	p.Arg439Leu	p.R439L	ENST00000331340	NM_006060.4	439	cGc/cTc																																																																															
MET	4233	MSKCC	GRCh37	7	116403116	116403116	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45440991		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	84	334	0	ENST00000397752.3:c.2377C>T	p.Arg793Cys	p.R793C	ENST00000397752	NM_000245.2	793	Cgc/Tgc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372093	55372093	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	32	517	3	ENST00000297316.4:c.788del	p.Pro263ArgfsTer124	p.P263Rfs*124	ENST00000297316	NM_022454.3	261	ggC/gg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900359	101900359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	48	282	0	ENST00000374994.4:c.793G>A	p.Ala265Thr	p.A265T	ENST00000374994	NM_004612.2	265	Gca/Aca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405231	139405231	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762050048		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	180	442	0	ENST00000277541.6:c.2614G>A	p.Glu872Lys	p.E872K	ENST00000277541	NM_017617.3	872	Gag/Aag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	100	278	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																															
STK40	83931	MSKCC	GRCh37	1	36807409	36807409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	110	432	0	ENST00000373129.3:c.1255C>T	p.Pro419Ser	p.P419S	ENST00000373129	NM_032017.1	419	Ccc/Tcc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45796204	45796204	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1454804175		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	98	424	0	ENST00000372115.3:c.1460A>G	p.Gln487Arg	p.Q487R	ENST00000372115	NM_001048171.1	487	cAg/cGg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739364	46739364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	89	484	0	ENST00000371975.4:c.1555G>A	p.Val519Met	p.V519M	ENST00000371975	NM_003579.3	519	Gtg/Atg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65332695	65332695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	87	385	0	ENST00000342505.4:c.844G>A	p.Gly282Ser	p.G282S	ENST00000342505	NM_002227.2	282	Ggt/Agt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65335016	65335016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	87	383	0	ENST00000342505.4:c.625C>T	p.Pro209Ser	p.P209S	ENST00000342505	NM_002227.2	209	Cca/Tca																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012405	176012405	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	77	297	0	ENST00000367669.3:c.1531-2A>G		p.X511_splice	ENST00000367669	NM_022457.5	511																																																																																
FGFR2	2263	MSKCC	GRCh37	10	123279539	123279539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	98	519	0	ENST00000358487.5:c.893G>A	p.Gly298Asp	p.G298D	ENST00000358487	NM_000141.4	298	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432327	49432327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	126	597	0	ENST00000301067.7:c.8812C>T	p.Pro2938Ser	p.P2938S	ENST00000301067	NM_003482.3	2938	Ccg/Tcg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28880906	28880906	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	37	467	1	ENST00000282397.4:c.3724T>C	p.Tyr1242His	p.Y1242H	ENST00000282397	NM_002019.4	1242	Tac/Cac																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436077	110436077	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	102	528	0	ENST00000375856.3:c.2324T>C	p.Val775Ala	p.V775A	ENST00000375856	NM_003749.2	775	gTc/gCc																																																																															
MGA	23269	MSKCC	GRCh37	15	42021429	42021429	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1474272053		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	99	430	0	ENST00000219905.7:c.3725G>A	p.Arg1242Gln	p.R1242Q	ENST00000219905	NM_001164273.1	1242	cGa/cAa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88690585	88690585	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	39	359	0	ENST00000360948.2:c.445A>G	p.Thr149Ala	p.T149A	ENST00000360948	NM_001012338.2	149	Acg/Gcg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99451979	99451979	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	27	483	0	ENST00000268035.6:c.1313A>G	p.Asn438Ser	p.N438S	ENST00000268035	NM_000875.3	438	aAc/aGc																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348867	11348867	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	69	460	0	ENST00000332029.2:c.469G>C	p.Ala157Pro	p.A157P	ENST00000332029	NM_003745.1	157	Gcg/Ccg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029454	14029454	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	57	544	0	ENST00000311895.7:c.1665T>A	p.His555Gln	p.H555Q	ENST00000311895	NM_005236.2	555	caT/caA																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81979788	81979788	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	101	463	0	ENST00000359376.3:c.3490T>C	p.Ser1164Pro	p.S1164P	ENST00000359376	NM_002661.3	1164	Tcc/Ccc																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38787109	38787109	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	85	470	0	ENST00000348513.6:c.884A>G	p.Gln295Arg	p.Q295R	ENST00000348513	NM_003079.4	295	cAg/cGg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554077	63554077	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	131	576	0	ENST00000307078.5:c.662T>C	p.Val221Ala	p.V221A	ENST00000307078	NM_004655.3	221	gTg/gCg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39638015	39638015	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	88	333	0	ENST00000262039.4:c.2432G>A	p.Arg811Lys	p.R811K	ENST00000262039	NM_002647.2	811	aGg/aAg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56338922	56338922	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1159016094		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	61	355	0	ENST00000348428.3:c.51del	p.Thr18ArgfsTer55	p.T18Rfs*55	ENST00000348428	NM_006785.3	16	gCc/gc																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6262304	6262305	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	113	444	0	ENST00000252674.7:c.210dup	p.Tyr71LeufsTer101	p.Y71Lfs*101	ENST00000252674	NM_005934.3	70	-/C																																																																															
INSR	3643	MSKCC	GRCh37	19	7267613	7267613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	80	500	0	ENST00000302850.5:c.395G>A	p.Gly132Asp	p.G132D	ENST00000302850	NM_000208.2	132	gGc/gAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281154	15281154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	105	482	0	ENST00000263388.2:c.5102C>T	p.Ala1701Val	p.A1701V	ENST00000263388	NM_000435.2	1701	gCg/gTg																																																																															
AKT2	208	MSKCC	GRCh37	19	40761069	40761069	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374073998		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	75	379	0	ENST00000392038.2:c.283G>A	p.Glu95Lys	p.E95K	ENST00000392038	NM_001626.4	95	Gag/Aag																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140174	50140174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	96	438	0	ENST00000246792.3:c.251C>T	p.Thr84Ile	p.T84I	ENST00000246792	NM_006270.3	84	aCc/aTc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52693381	52693382	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	95	454	0	ENST00000322088.6:c.36dup	p.Ile13HisfsTer11	p.I13Hfs*11	ENST00000322088	NM_014225.5	11	tac/taCc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467451	25467451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	126	511	0	ENST00000264709.3:c.1625G>A	p.Gly542Glu	p.G542E	ENST00000264709	NM_175629.2	542	gGg/gAg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47635627	47635627	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	55	254	0	ENST00000233146.2:c.299T>C	p.Val100Ala	p.V100A	ENST00000233146	NM_000251.2	100	gTt/gCt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101106	41101106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	88	472	0	ENST00000373198.4:c.1250G>A	p.Cys417Tyr	p.C417Y	ENST00000373198	NM_133170.3	417	tGc/tAc																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945332	54945332	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	64	261	0	ENST00000312783.6:c.1094A>G	p.Lys365Arg	p.K365R	ENST00000312783	NM_198436.1	365	aAg/aGg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445423	29445423	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	103	581	0	ENST00000544604.2:c.1254C>A	p.Ser418Arg	p.S418R	ENST00000544604	NM_001206998.1	418	agC/agA																																																																															
MST1	4485	MSKCC	GRCh37	3	49724992	49724992	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	105	343	0	ENST00000449682.2:c.352A>G	p.Lys118Glu	p.K118E	ENST00000449682	NM_020998.3	118	Aaa/Gaa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39003674	39003674	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	50	316	0	ENST00000357387.3:c.246G>T	p.Glu82Asp	p.E82D	ENST00000357387	NM_152756.3	82	gaG/gaT																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751200	57751200	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	82	406	0	ENST00000274289.3:c.1667del	p.Phe556SerfsTer14	p.F556Sfs*14	ENST00000274289	NM_006622.3	556	tTc/tc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755750	57755750	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115808605		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	80	475	0	ENST00000274289.3:c.37G>A	p.Ala13Thr	p.A13T	ENST00000274289	NM_006622.3	13	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112177462	112177462	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	74	425	0	ENST00000257430.4:c.6171G>T	p.Lys2057Asn	p.K2057N	ENST00000257430	NM_000038.5	2057	aaG/aaT																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31238990	31238990	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs72558148		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	13	242	0	ENST00000376228.5:c.479C>T	p.Ala160Val	p.A160V	ENST00000376228	NM_002117.5	160	gCg/gTg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324691	31324753	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGCCGGGACACGGAGGTGTAGAAATACCTCATGGAGTGGGAGCCTGGGGGTGAGGAGGGGCT	GGGCCGGGACACGGAGGTGTAGAAATACCTCATGGAGTGGGAGCCTGGGGGTGAGGAGGGGCT	-			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	23	346	0	ENST00000412585.2:c.74-19_117del		p.X25_splice	ENST00000412585	NM_005514.6	25																																																																																
EPHA7	2045	MSKCC	GRCh37	6	94120573	94120573	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	36	366	0	ENST00000369303.4:c.478C>A	p.Leu160Ile	p.L160I	ENST00000369303	NM_004440.3	160	Ctt/Att																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265476	152265476	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	83	409	0	ENST00000206249.3:c.929T>C	p.Leu310Pro	p.L310P	ENST00000206249	NM_000125.3	310	cTg/cCg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978462	2978462	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1331618139		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	74	365	0	ENST00000396946.4:c.868G>A	p.Gly290Arg	p.G290R	ENST00000396946	NM_032415.4	290	Ggg/Agg																																																																															
SMO	6608	MSKCC	GRCh37	7	128851492	128851492	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	54	441	0	ENST00000249373.3:c.1817A>G	p.Asp606Gly	p.D606G	ENST00000249373	NM_005631.4	606	gAc/gGc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460508	8460508	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs368896994		P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	93	473	0	ENST00000356435.5:c.3778A>G	p.Ile1260Val	p.I1260V	ENST00000356435		1260	Atc/Gtc																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127920537	127920537	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	58	253	0	ENST00000373547.4:c.362A>G	p.Gln121Arg	p.Q121R	ENST00000373547	NM_002721.4	121	cAg/cGg																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650780	48650780	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	145	317	1	ENST00000376670.3:c.649A>G	p.Arg217Gly	p.R217G	ENST00000376670	NM_002049.3	217	Agg/Ggg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412582	63412582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066694-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	41	244	0	ENST00000330258.3:c.585G>T	p.Lys195Asn	p.K195N	ENST00000330258	NM_152424.3	195	aaG/aaT																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256530	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0066695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	31	484	1	ENST00000369535.4:c.181_182delinsAT	p.Gln61Ile	p.Q61I	ENST00000369535	NM_002524.4	61	CAa/ATa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031966	10031966	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	52	579	0	ENST00000330684.3:c.857A>G	p.Tyr286Cys	p.Y286C	ENST00000330684	NM_001134407.1	286	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0066695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	32	495	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
RHOA	387	MSKCC	GRCh37	3	49412884	49412884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	10	516	0	ENST00000418115.1:c.139G>A	p.Glu47Lys	p.E47K	ENST00000418115	NM_001664.2	47	Gag/Aag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8517914	8517914	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	23	448	0	ENST00000356435.5:c.1477C>A	p.Leu493Met	p.L493M	ENST00000356435		493	Ctg/Atg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936218	150936218	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0066695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	108	534	0	ENST00000271640.5:c.3669+1G>T		p.X1223_splice	ENST00000271640	NM_001145415.1	1223																																																																																
LMO1	4004	MSKCC	GRCh37	11	8251853	8251853	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	34	586	0	ENST00000335790.3:c.224G>T	p.Arg75Leu	p.R75L	ENST00000335790	NM_002315.2	75	cGa/cTa																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514299	69514299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	58	542	0	ENST00000294312.3:c.382C>T	p.Pro128Ser	p.P128S	ENST00000294312	NM_005117.2	128	Cca/Tca																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18658324	18658324	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	19	499	0	ENST00000266497.5:c.3129G>T	p.Lys1043Asn	p.K1043N	ENST00000266497		1043	aaG/aaT																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59853924	59853924	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0066695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	21	409	0	ENST00000259008.2:c.1936-1G>T		p.X646_splice	ENST00000259008	NM_032043.2	646																																																																																
SRC	6714	MSKCC	GRCh37	20	36031281	36031281	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0066695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	47	443	0	ENST00000358208.4:c.1400C>G	p.Pro467Arg	p.P467R	ENST00000358208		467	cCt/cGt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155024	55155024	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	73	562	0	ENST00000257290.5:c.2733T>A	p.Ser911Arg	p.S911R	ENST00000257290	NM_006206.4	911	agT/agA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412224	63412224	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	64	639	0	ENST00000330258.3:c.943G>C	p.Asp315His	p.D315H	ENST00000330258	NM_152424.3	315	Gat/Cat																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466300	120466300	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761870508		P-0066698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	49	381	1	ENST00000256646.2:c.4819C>T	p.Arg1607Cys	p.R1607C	ENST00000256646	NM_024408.3	1607	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0066698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	176	387	0	ENST00000269305.4:c.838A>T	p.Arg280Ter	p.R280*	ENST00000269305	NM_001126112.2	280	Aga/Tga																																																																															
RET	5979	MSKCC	GRCh37	10	43609055	43609055	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	141	492	0	ENST00000355710.3:c.1811C>G	p.Ala604Gly	p.A604G	ENST00000355710	NM_020975.4	604	gCt/gGt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341350	89341350	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	36	259	0	ENST00000301030.4:c.7585T>C	p.Ser2529Pro	p.S2529P	ENST00000301030	NM_001256183.1	2529	Tcc/Ccc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622398	1622398	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0066698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	55	311	0	ENST00000344749.5:c.566C>G	p.Ser189Ter	p.S189*	ENST00000344749	NM_001136139.2	189	tCa/tGa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223964	36223964	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769681222		P-0066698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			787	48	495	0	ENST00000222270.7:c.6514G>A	p.Val2172Ile	p.V2172I	ENST00000222270	NM_014727.1	2172	Gtc/Atc																																																																															
TRIP13	9319	MSKCC	GRCh37	5	893180	893180	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066698-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	30	289	0	ENST00000166345.3:c.67G>C	p.Val23Leu	p.V23L	ENST00000166345	NM_004237.3	23	Gtg/Ctg																																																																															
APC	324	MSKCC	GRCh37	5	112176027	112176027	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	35	456	0	ENST00000257430.4:c.4737del	p.Ile1580PhefsTer70	p.I1580Ffs*70	ENST00000257430	NM_000038.5	1579	aTt/at																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0066768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	123	431	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																															
PGR	5241	MSKCC	GRCh37	11	100999243	100999243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	11	368	0	ENST00000325455.5:c.559C>T	p.Arg187Trp	p.R187W	ENST00000325455	NM_001202474.3	187	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175770	112175770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	22	483	0	ENST00000257430.4:c.4480del	p.Glu1494LysfsTer13	p.E1494Kfs*13	ENST00000257430	NM_000038.5	1493	acG/ac																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14014084	14014084	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	68	337	0	ENST00000311895.7:c.62A>G	p.Gln21Arg	p.Q21R	ENST00000311895	NM_005236.2	21	cAg/cGg																																																																															
APC	324	MSKCC	GRCh37	5	112176548	112176549	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0066768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	17	467	0	ENST00000257430.4:c.5258dup	p.Ser1754IlefsTer15	p.S1754Ifs*15	ENST00000257430	NM_000038.5	1753	gca/gCca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690821	89690821	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0066769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	40	216	0	ENST00000371953.3:c.228T>A	p.Tyr76Ter	p.Y76*	ENST00000371953	NM_000314.4	76	taT/taA																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874160	155874160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	60	318	0	ENST00000368323.3:c.371C>T	p.Thr124Ile	p.T124I	ENST00000368323	NM_006912.5	124	aCt/aTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0049443-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			360	29	367	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs757274881		P-0057825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			30	48	505	0	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575231	48575231	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs377767386		P-0057825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			38	24	273	0	ENST00000342988.3:c.424+1G>A		p.X142_splice	ENST00000342988	NM_005359.5	142																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0057825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			74	59	311	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0065087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			249	356	371	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101909953	101909953	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			74	119	290	0	ENST00000374994.4:c.1273C>T	p.Gln425Ter	p.Q425*	ENST00000374994	NM_004612.2	425	Caa/Taa																																																																															
KDR	3791	MSKCC	GRCh37	4	55956125	55956125	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0065087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			231	13	337	0	ENST00000263923.4:c.3190G>T	p.Asp1064Tyr	p.D1064Y	ENST00000263923	NM_002253.2	1064	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0065087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			134	120	288	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630451	67630457	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAGGA	AAGAGGA	-			P-0065087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			84	47	304	0	ENST00000272342.5:c.638_644del	p.Lys213IlefsTer7	p.K213Ifs*7	ENST00000272342	NM_019002.3	213	AAGAGGAat/at																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440727	56440727	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065087-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			301	453	491	1	ENST00000407977.2:c.491T>G	p.Ile164Ser	p.I164S	ENST00000407977		164	aTc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578464	7578476	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGCCGGGCGG	GGGTGCCGGGCGG	-	rs876659215		P-0066088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	202	438	0	ENST00000269305.4:c.454_466del	p.Pro152AlafsTer14	p.P152Afs*14	ENST00000269305	NM_001126112.2	152	CCGCCCGGCACCCgc/gc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953355	17953355	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs56269787		P-0066088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	77	405	0	ENST00000458235.1:c.631A>G	p.Arg211Gly	p.R211G	ENST00000458235	NM_000215.3	211	Agg/Ggg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41226503	41226504	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0066088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	183	460	0	ENST00000357654.3:c.4519_4520del	p.Arg1507ValfsTer13	p.R1507Vfs*13	ENST00000357654	NM_007294.3	1507	AGg/g																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644769	67644769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	191	480	0	ENST00000264010.4:c.34G>A	p.Glu12Lys	p.E12K	ENST00000264010	NM_006565.3	12	Gag/Aag																																																																															
SMO	6608	MSKCC	GRCh37	7	128852092	128852092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	70	434	0	ENST00000249373.3:c.2164G>A	p.Gly722Arg	p.G722R	ENST00000249373	NM_005631.4	722	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0066207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	85	703	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448310	56448310	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	91	658	0	ENST00000407977.2:c.337C>T	p.Arg113Ter	p.R113*	ENST00000407977		113	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	47	345	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137328402	137328402	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	77	656	0	ENST00000481739.1:c.1331A>T	p.Asp444Val	p.D444V	ENST00000481739	NM_002957.4	444	gAc/gTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971137	21971146	+	frameshift_variant	Frame_Shift_Del	DEL	TCGGCGCAGT	TCGGCGCAGT	-			P-0066207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	73	675	0	ENST00000304494.5:c.212_221del	p.Asn71ThrfsTer72	p.N71Tfs*72	ENST00000304494	NM_000077.4	71	aACTGCGCCGAc/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578175	7578175	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0066295-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			221	321	494	0	ENST00000269305.4:c.672+2T>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
CTCF	10664	MSKCC	GRCh37	16	67645904	67645904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1266478000		P-0066295-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	294	462	0	ENST00000264010.4:c.832C>T	p.Arg278Cys	p.R278C	ENST00000264010	NM_006565.3	278	Cgt/Tgt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211387	36211387	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066295-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			581	126	484	0	ENST00000222270.7:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000222270	NM_014727.1	380	Gag/Cag																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023222	33023222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066295-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	174	506	0	ENST00000300177.4:c.331C>A	p.Arg111Ser	p.R111S	ENST00000300177	NM_001191322.1	111	Cgc/Agc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39613853	39613853	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066295-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			167	129	431	0	ENST00000262039.4:c.1771A>T	p.Ile591Phe	p.I591F	ENST00000262039	NM_002647.2	591	Atc/Ttc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038826	47038826	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066295-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			425	267	383	0	ENST00000329236.7:c.604del	p.Gln202ArgfsTer29	p.Q202Rfs*29	ENST00000329236	NM_001204466.1	201	gCc/gc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148524307	148524307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066295-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	149	421	0	ENST00000320356.2:c.677C>T	p.Ala226Val	p.A226V	ENST00000320356	NM_004456.4	226	gCc/gTc																																																																															
SYK	6850	MSKCC	GRCh37	9	93639929	93639929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066295-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			465	134	410	0	ENST00000375746.1:c.1258G>A	p.Glu420Lys	p.E420K	ENST00000375746	NM_001174167.1	420	Gaa/Aaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913396		P-0066366-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			276	167	474	0	ENST00000349496.5:c.95A>G	p.Asp32Gly	p.D32G	ENST00000349496	NM_001904.3	32	gAc/gGc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78435612	78435612	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066366-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			170	75	339	2	ENST00000370768.2:c.208G>T	p.Gly70Ter	p.G70*	ENST00000370768	NM_003902.3	70	Gga/Tga																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399129	139399129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745901158		P-0066366-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	52	366	0	ENST00000277541.6:c.5014C>T	p.Arg1672Cys	p.R1672C	ENST00000277541	NM_017617.3	1672	Cgc/Tgc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217197	66217197	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066366-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			215	123	431	0	ENST00000273854.3:c.2418C>G	p.Ile806Met	p.I806M	ENST00000273854	NM_004439.5	806	atC/atG																																																																															
NF1	4763	MSKCC	GRCh37	17	29654712	29654712	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066366-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			541	307	443	0	ENST00000358273.4:c.5464C>T	p.Gln1822Ter	p.Q1822*	ENST00000358273	NM_001042492.2	1822	Cag/Tag																																																																															
EP300	2033	MSKCC	GRCh37	22	41574154	41574154	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066366-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			273	179	480	0	ENST00000263253.7:c.6439C>G	p.Gln2147Glu	p.Q2147E	ENST00000263253	NM_001429.3	2147	Cag/Gag																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195419	102195419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066366-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			491	29	438	0	ENST00000263464.3:c.179T>C	p.Val60Ala	p.V60A	ENST00000263464	NM_001165.4	60	gTg/gCg																																																																															
CBFB	865	MSKCC	GRCh37	16	67063334	67063334	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066366-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			179	85	370	0	ENST00000412916.2:c.24G>C	p.Gln8His	p.Q8H	ENST00000412916		8	caG/caC																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013738	12013738	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066366-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			53	180	346	0	ENST00000353533.5:c.680A>T	p.His227Leu	p.H227L	ENST00000353533	NM_003010.3	227	cAc/cTc																																																																															
PHF6	84295	MSKCC	GRCh37	X	133547868	133547868	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066366-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			199	118	407	0	ENST00000332070.3:c.601C>A	p.His201Asn	p.H201N	ENST00000332070	NM_032458.2	201	Cac/Aac																																																																															
NF1	4763	MSKCC	GRCh37	17	29556437	29556465	+	frameshift_variant	Frame_Shift_Del	DEL	ACAAATTGAAGAATACCATCAGCAAGTTT	ACAAATTGAAGAATACCATCAGCAAGTTT	-			P-0066366-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	336	404	0	ENST00000358273.4:c.2804_2832del	p.Asn935IlefsTer2	p.N935Ifs*2	ENST00000358273	NM_001042492.2	935	aACAAATTGAAGAATACCATCAGCAAGTTT/a																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250668	26250668	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066366-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			362	376	572	0	ENST00000446824.2:c.166C>T	p.Gln56Ter	p.Q56*	ENST00000446824	NM_021018.2	56	Cag/Tag																																																																															
CDC42	998	MSKCC	GRCh37	1	22408252	22408252	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066366-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			230	104	385	0	ENST00000344548.3:c.143G>T	p.Gly48Val	p.G48V	ENST00000344548	NM_001039802.1	48	gGa/gTa																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2029030	2029030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066366-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			233	155	529	0	ENST00000349721.2:c.8C>T	p.Thr3Met	p.T3M	ENST00000349721	NM_003070.3	3	aCg/aTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212483979	212483979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066366-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			186	93	350	0	ENST00000342788.4:c.2224G>A	p.Glu742Lys	p.E742K	ENST00000342788	NM_005235.2	742	Gaa/Aaa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967215	134967215	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	132	800	0	ENST00000398015.3:c.2554G>T	p.Ala852Ser	p.A852S	ENST00000398015	NM_004441.4	852	Gct/Tct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0066623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	221	538	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111907632	111907632	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	31	568	0	ENST00000393256.3:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000393256	NM_006538.4	136	Cag/Tag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212495299	212495299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	22	653	0	ENST00000342788.4:c.1967G>T	p.Gly656Val	p.G656V	ENST00000342788	NM_005235.2	656	gGa/gTa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956705	93956705	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-			P-0066623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	26	549	0	ENST00000369303.4:c.2533-2del		p.X845_splice	ENST00000369303	NM_004440.3	845																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0066624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	22	246	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0066624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	199	377	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0066624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	89	479	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112174835	112174835	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0066624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	111	433	0	ENST00000257430.4:c.3544A>T	p.Lys1182Ter	p.K1182*	ENST00000257430	NM_000038.5	1182	Aaa/Taa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022925	31022925	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0066624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			890	222	553	0	ENST00000375687.4:c.2410G>T	p.Gly804Ter	p.G804*	ENST00000375687	NM_015338.5	804	Gga/Tga																																																																															
MITF	4286	MSKCC	GRCh37	3	69987156	69987156	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	85	455	0	ENST00000352241.4:c.538A>G	p.Ser180Gly	p.S180G	ENST00000352241	NM_198159.2	180	Agc/Ggc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492752	56492752	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			750	97	464	0	ENST00000407977.2:c.187C>G	p.Leu63Val	p.L63V	ENST00000407977		63	Ctc/Gtc																																																																															
NF1	4763	MSKCC	GRCh37	17	29528146	29528146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	192	396	0	ENST00000358273.4:c.1154G>T	p.Arg385Leu	p.R385L	ENST00000358273	NM_001042492.2	385	cGt/cTt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100462	8100462	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	171	724	0	ENST00000346208.3:c.436G>T	p.Ala146Ser	p.A146S	ENST00000346208		146	Gcc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0066625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	195	343	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16068451	16068451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	14	131	0	ENST00000268712.3:c.460G>A	p.Glu154Lys	p.E154K	ENST00000268712	NM_006311.3	154	Gaa/Aaa																																																																															
CALR	811	MSKCC	GRCh37	19	13054612	13054612	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs201971744		P-0066625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	180	690	0	ENST00000316448.5:c.1139A>G	p.Glu380Gly	p.E380G	ENST00000316448	NM_004343.3	380	gAg/gGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0066625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	53	271	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951994	178951994	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	126	497	0	ENST00000263967.3:c.3049G>C	p.Asp1017His	p.D1017H	ENST00000263967	NM_006218.2	1017	Gat/Cat																																																																															
REST	5978	MSKCC	GRCh37	4	57797599	57797599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	146	657	2	ENST00000309042.7:c.2575G>A	p.Asp859Asn	p.D859N	ENST00000309042	NM_005612.4	859	Gat/Aat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836762	151836762	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0066625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	24	417	0	ENST00000262189.6:c.14458C>T	p.Gln4820Ter	p.Q4820*	ENST00000262189	NM_170606.2	4820	Cag/Tag																																																																															
AR	367	MSKCC	GRCh37	X	66765842	66765842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	174	759	0	ENST00000374690.3:c.854C>A	p.Ala285Asp	p.A285D	ENST00000374690	NM_000044.3	285	gCc/gAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76937439	76937439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	109	572	0	ENST00000373344.5:c.3309G>T	p.Lys1103Asn	p.K1103N	ENST00000373344	NM_000489.3	1103	aaG/aaT																																																																															
STK40	83931	MSKCC	GRCh37	1	36807523	36807523	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	141	509	1	ENST00000373129.3:c.1141C>G	p.Gln381Glu	p.Q381E	ENST00000373129	NM_032017.1	381	Cag/Gag																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488637	231488637	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	149	506	0	ENST00000295050.7:c.1000A>G	p.Arg334Gly	p.R334G	ENST00000295050	NM_032018.5	334	Aga/Gga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118353175	118353175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	114	476	0	ENST00000534358.1:c.4051C>T	p.Pro1351Ser	p.P1351S	ENST00000534358	NM_005933.3	1351	Cca/Tca																																																																															
FLT1	2321	MSKCC	GRCh37	13	28880836	28880836	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	165	615	0	ENST00000282397.4:c.3794C>G	p.Pro1265Arg	p.P1265R	ENST00000282397	NM_002019.4	1265	cCc/cGc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965626	25965626	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	296	592	0	ENST00000435504.4:c.3580A>G	p.Thr1194Ala	p.T1194A	ENST00000435504		1194	Aca/Gca																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561257	9561257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	165	604	0	ENST00000353224.5:c.525G>T	p.Met175Ile	p.M175I	ENST00000353224	NM_177990.2	175	atG/atT																																																																															
MLH1	4292	MSKCC	GRCh37	3	37059022	37059022	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	150	481	0	ENST00000231790.2:c.816G>C	p.Leu272Phe	p.L272F	ENST00000231790	NM_000249.3	272	ttG/ttC																																																																															
TET2	54790	MSKCC	GRCh37	4	106158343	106158343	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	32	588	0	ENST00000380013.4:c.3244G>C	p.Glu1082Gln	p.E1082Q	ENST00000380013	NM_001127208.2	1082	Gag/Cag																																																																															
POT1	25913	MSKCC	GRCh37	7	124467361	124467361	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0066625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	125	405	0	ENST00000357628.3:c.1595-2A>T		p.X532_splice	ENST00000357628	NM_015450.2	532																																																																																
POT1	25913	MSKCC	GRCh37	7	124503404	124503404	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0066625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	88	384	0	ENST00000357628.3:c.546G>T	p.Lys182Asn	p.K182N	ENST00000357628	NM_015450.2	182	aaG/aaT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045871	47045871	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0066625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	219	748	0	ENST00000329236.7:c.2434-2A>G		p.X812_splice	ENST00000329236	NM_001204466.1	812																																																																																
AMER1	139285	MSKCC	GRCh37	X	63412436	63412436	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066625-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	186	733	0	ENST00000330258.3:c.731A>T	p.Glu244Val	p.E244V	ENST00000330258	NM_152424.3	244	gAa/gTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426790	49426811	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGCTGTAAAGAGCCCATGGG	GCTGCTGTAAAGAGCCCATGGG	-			P-0066629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	32	503	0	ENST00000301067.7:c.11677_11698del	p.Pro3893PhefsTer79	p.P3893Ffs*79	ENST00000301067	NM_003482.3	3893	CCCATGGGCTCTTTACAGCAGCtt/tt																																																																															
MGA	23269	MSKCC	GRCh37	15	42046680	42046681	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0066629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	136	440	0	ENST00000219905.7:c.7056dup	p.Glu2353Ter	p.E2353*	ENST00000219905	NM_001164273.1	2352	att/aTtt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061109	38061112	+	frameshift_variant	Frame_Shift_Del	DEL	GGCT	GGCT	CG			P-0066629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	9	429	0	ENST00000250448.2:c.877_880delinsCG	p.Ser293ArgfsTer9	p.S293Rfs*9	ENST00000250448	NM_004496.3	293	AGCCgc/CGgc																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0066632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			31	186	248	2	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42003344	42003344	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0066632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			49	289	297	5	ENST00000219905.7:c.2881G>T	p.Glu961Ter	p.E961*	ENST00000219905	NM_001164273.1	961	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			14	121	181	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31407020	31407020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	162	241	2	ENST00000344624.3:c.3887G>A	p.Arg1296Gln	p.R1296Q	ENST00000344624		1296	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578544	7578545	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0066632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	367	262	3	ENST00000269305.4:c.385dup	p.Ala129GlyfsTer20	p.A129Gfs*20	ENST00000269305	NM_001126112.2	129	gcc/gGcc																																																																															
ATRX	546	MSKCC	GRCh37	X	76938672	76938681	+	frameshift_variant	Frame_Shift_Del	DEL	TGATAGTTTT	TGATAGTTTT	-			P-0066632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	38	271	5	ENST00000373344.5:c.2067_2076del	p.Lys690PhefsTer3	p.K690Ffs*3	ENST00000373344	NM_000489.3	689	caAAAACTATCA/ca																																																																															
TERT	7015	MSKCC	GRCh37	5	1295591	1295591	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0066632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	149	269	0				ENST00000310581	NM_198253.2																																																																																	
PLCG2	5336	MSKCC	GRCh37	16	81888075	81888075	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780140339		P-0066651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	65	525	0	ENST00000359376.3:c.220C>T	p.Arg74Cys	p.R74C	ENST00000359376	NM_002661.3	74	Cgc/Tgc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81929516	81929516	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs760949449		P-0066651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	65	657	0	ENST00000359376.3:c.1177G>T	p.Ala393Ser	p.A393S	ENST00000359376	NM_002661.3	393	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs985033810		P-0066651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	102	488	2	ENST00000269305.4:c.731G>T	p.Gly244Val	p.G244V	ENST00000269305	NM_001126112.2	244	gGc/gTc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082359	16082359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	85	687	2	ENST00000281043.3:c.173C>T	p.Thr58Met	p.T58M	ENST00000281043	NM_005378.4	58	aCg/aTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69143594	69143594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	47	462	0	ENST00000288368.4:c.4802C>T	p.Pro1601Leu	p.P1601L	ENST00000288368	NM_024870.2	1601	cCc/cTc																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0066651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	106	441	3	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166590	118166590	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	45	648	0	ENST00000369448.3:c.1100A>G	p.Asn367Ser	p.N367S	ENST00000369448	NM_017709.3	367	aAc/aGc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46211644	46211645	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0066651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	108	452	0	ENST00000334344.6:c.612dup	p.Ala205CysfsTer2	p.A205Cfs*2	ENST00000334344	NM_152641.2	204	ctt/cTtt																																																																															
INHA	3623	MSKCC	GRCh37	2	220439522	220439522	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	110	758	0	ENST00000243786.2:c.375G>T	p.Gln125His	p.Q125H	ENST00000243786	NM_002191.3	125	caG/caT																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546909	9546909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	169	695	0	ENST00000353224.5:c.1113C>A	p.His371Gln	p.H371Q	ENST00000353224	NM_177990.2	371	caC/caA																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171654	36171654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	144	594	0	ENST00000300305.3:c.911C>T	p.Pro304Leu	p.P304L	ENST00000300305		304	cCt/cTt																																																																															
NF2	4771	MSKCC	GRCh37	22	30070903	30070903	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	91	580	0	ENST00000338641.4:c.1420del	p.Glu474ArgfsTer11	p.E474Rfs*11	ENST00000338641	NM_000268.3	473	ctG/ct																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149290651	149290651	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0066651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	191	444	0	ENST00000360632.3:c.568G>T	p.Val190Leu	p.V190L	ENST00000360632	NM_015472.4	190	Gtg/Ttg																																																																															
CDK6	1021	MSKCC	GRCh37	7	92404138	92404138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			951	61	562	0	ENST00000265734.4:c.241G>A	p.Asp81Asn	p.D81N	ENST00000265734	NM_001259.6	81	Gat/Aat																																																																															
MED12	9968	MSKCC	GRCh37	X	70357638	70357638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	33	372	0	ENST00000374080.3:c.5889G>A	p.Met1963Ile	p.M1963I	ENST00000374080		1963	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0066654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	71	532	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	67	338	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52584320	52584532	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTATTTTAATTGTATAAGAAAAAGGGGTGTTTATTGTATGATATACTATGCTAACAGCAGTAAGACAGCTTTGAGGAAGCATGTATTTCACAAAGGCTTATTTAGAAGGAATCTTACCTGCCAGTGTCTGATCCCACTTGCTAATGCTGTTGGACTCCGCACTGAGTCCTTCAATGTATTTCAGGTAGGCCTCTGAGTGAAGAAGCCGCTGGG	TTATTTTAATTGTATAAGAAAAAGGGGTGTTTATTGTATGATATACTATGCTAACAGCAGTAAGACAGCTTTGAGGAAGCATGTATTTCACAAAGGCTTATTTAGAAGGAATCTTACCTGCCAGTGTCTGATCCCACTTGCTAATGCTGTTGGACTCCGCACTGAGTCCTTCAATGTATTTCAGGTAGGCCTCTGAGTGAAGAAGCCGCTGGG	-			P-0066654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			56	45	120	0	ENST00000394830.3:c.4481_4576+117del		p.X1494_splice	ENST00000394830	NM_018313.4	1494																																																																																
SPRED1	161742	MSKCC	GRCh37	15	38643828	38643828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	66	519	0	ENST00000299084.4:c.1298G>A	p.Cys433Tyr	p.C433Y	ENST00000299084	NM_152594.2	433	tGt/tAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713865	30713865	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066654-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	68	641	0	ENST00000359013.4:c.1265A>T	p.Asp422Val	p.D422V	ENST00000359013	NM_001024847.2	422	gAc/gTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028804	47028804	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	40	238	0	ENST00000329236.7:c.108C>A	p.Tyr36Ter	p.Y36*	ENST00000329236	NM_001204466.1	36	taC/taA																																																																															
MET	4233	MSKCC	GRCh37	7	116411856	116411882	+	intron_variant	Intron	DEL	CCATGATAGCCGTCTTTAACAAGCTCT	CCATGATAGCCGTCTTTAACAAGCTCT	-			P-0066655-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	104	536	0	ENST00000397752.3:c.2888-47_2888-21del		p.*963*	ENST00000397752	NM_000245.2																																																																																	
CCND2	894	MSKCC	GRCh37	12	4409089	4409089	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777848359		P-0066705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	83	436	0	ENST00000261254.3:c.784C>T	p.Arg262Cys	p.R262C	ENST00000261254	NM_001759.3	262	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578509	7578510	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGTCTT			P-0066705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	84	485	0	ENST00000269305.4:c.415_420dup	p.Lys139_Thr140dup	p.K139_T140dup	ENST00000269305	NM_001126112.2	139	-/AAGACC																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564174	139564174	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0066705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	65	371	0	ENST00000308874.7:c.313+1G>A		p.X105_splice	ENST00000308874		105																																																																																
PRDM1	639	MSKCC	GRCh37	6	106554955	106554963	+	inframe_deletion	In_Frame_Del	DEL	AGTGCCACA	AGTGCCACA	-			P-0066705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	71	527	0	ENST00000369096.4:c.2074_2082del	p.Cys692_Lys694del	p.C692_K694del	ENST00000369096	NM_001198.3	691	cAGTGCCACAag/cag																																																																															
CASP8	841	MSKCC	GRCh37	2	202131253	202131254	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0066705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	69	363	0	ENST00000358485.4:c.222_223del	p.Asp74GlufsTer2	p.D74Efs*2	ENST00000358485	NM_001080125.1	74	gAC/g																																																																															
ALK	238	MSKCC	GRCh37	2	29416364	29416364	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	76	490	0	ENST00000389048.3:c.4589G>T	p.Arg1530Met	p.R1530M	ENST00000389048	NM_004304.4	1530	aGg/aTg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245405	41245405	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0066705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	97	219	0	ENST00000357654.3:c.2143del	p.Thr715ProfsTer21	p.T715Pfs*21	ENST00000357654	NM_007294.3	715	Acc/cc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112919970	112919970	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	33	173	0	ENST00000351677.2:c.1185C>A	p.Asp395Glu	p.D395E	ENST00000351677	NM_002834.3	395	gaC/gaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0066420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	522	579	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
RET	5979	MSKCC	GRCh37	10	43620387	43620387	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748288493		P-0066420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1088	286	525	2	ENST00000355710.3:c.2996C>T	p.Ala999Val	p.A999V	ENST00000355710	NM_020975.4	999	gCg/gTg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38178602	38178602	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			9358	577	390	0	ENST00000317025.8:c.1797C>G	p.Ile599Met	p.I599M	ENST00000317025	NM_023034.1	599	atC/atG																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150923227	150923227	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1014	293	536	0	ENST00000271640.5:c.1874T>G	p.Val625Gly	p.V625G	ENST00000271640	NM_001145415.1	625	gTt/gGt																																																																															
MGA	23269	MSKCC	GRCh37	15	42054525	42054525	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	164	402	0	ENST00000219905.7:c.7709C>A	p.Pro2570His	p.P2570H	ENST00000219905	NM_001164273.1	2570	cCt/cAt																																																																															
EP300	2033	MSKCC	GRCh37	22	41574580	41574580	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063953-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			194	43	548	0	ENST00000263253.7:c.6865G>T	p.Ala2289Ser	p.A2289S	ENST00000263253	NM_001429.3	2289	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0063953-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			150	56	419	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468477	89468477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063953-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			140	47	396	0	ENST00000336596.2:c.2011G>A	p.Ala671Thr	p.A671T	ENST00000336596	NM_005233.5	671	Gca/Aca																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933061	39933061	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063953-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			232	32	516	0	ENST00000378444.4:c.1538G>T	p.Gly513Val	p.G513V	ENST00000378444	NM_001123385.1	513	gGg/gTg																																																																															
KIT	3815	MSKCC	GRCh37	4	55592135	55592135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063953-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			177	26	376	0	ENST00000288135.5:c.1459G>A	p.Gly487Ser	p.G487S	ENST00000288135	NM_000222.2	487	Ggc/Agc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176176113	176176113	+	frameshift_variant,start_lost	Frame_Shift_Del	DEL	A	A	-			P-0063953-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			150	63	367	0	ENST00000367669.3:c.2del	p.Met1?	p.M1?	ENST00000367669	NM_022457.5	1	aTg/ag																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264324	30264324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063953-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			94	31	216	0	ENST00000322652.5:c.59C>T	p.Ser20Phe	p.S20F	ENST00000322652	NM_015355.2	20	tCc/tTc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675174	30675174	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs150897053		P-0063953-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			193	81	521	0	ENST00000376406.3:c.3071A>T	p.Glu1024Val	p.E1024V	ENST00000376406	NM_014641.2	1024	gAg/gTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906809	50906809	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063953-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			214	57	412	1	ENST00000440232.2:c.1197G>T	p.Gln399His	p.Q399H	ENST00000440232	NM_002691.3	399	caG/caT																																																																															
NF1	4763	MSKCC	GRCh37	17	29556169	29556169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063953-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			68	17	166	0	ENST00000358273.4:c.2536G>T	p.Ala846Ser	p.A846S	ENST00000358273	NM_001042492.2	846	Gcc/Tcc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16001809	16001809	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0056481-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			289	18	254	0	ENST00000268712.3:c.2692A>G	p.Met898Val	p.M898V	ENST00000268712	NM_006311.3	898	Atg/Gtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242482	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAAC	AATTAAGAGAAGCAAC	T			P-0056481-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			302	38	290	0	ENST00000275493.2:c.2237_2252delinsT	p.Glu746_Thr751delinsVal	p.E746_T751delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACa/gTa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37873654	37873654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061138-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			551	34	476	0	ENST00000269571.5:c.1819G>A	p.Asp607Asn	p.D607N	ENST00000269571		607	Gac/Aac																																																																															
JAK1	3716	MSKCC	GRCh37	1	65321345	65321345	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0061138-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			623	40	506	0	ENST00000342505.4:c.1495C>T	p.Gln499Ter	p.Q499*	ENST00000342505	NM_002227.2	499	Cag/Tag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061010	38061010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061138-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			362	21	592	1	ENST00000250448.2:c.979G>A	p.Gly327Arg	p.G327R	ENST00000250448	NM_004496.3	327	Ggg/Agg																																																																															
CDH1	999	MSKCC	GRCh37	16	68835618	68835618	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061138-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			518	29	560	0	ENST00000261769.5:c.211del	p.Leu71SerfsTer12	p.L71Sfs*12	ENST00000261769	NM_004360.3	70	tCc/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0065498-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			330	494	572	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967264	134967264	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748426868		P-0065498-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			475	212	537	0	ENST00000398015.3:c.2603G>A	p.Arg868Gln	p.R868Q	ENST00000398015	NM_004441.4	868	cGg/cAg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508589	106508589	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1257245065		P-0065498-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			317	214	407	0	ENST00000359195.3:c.583C>A	p.Leu195Ile	p.L195I	ENST00000359195	NM_002649.2	195	Ctc/Atc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47679339	47679339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065498-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			378	304	367	0	ENST00000347630.2:c.868G>A	p.Glu290Lys	p.E290K	ENST00000347630	NM_001007230.1	290	Gag/Aag																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158464	26158464	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs916752202		P-0065498-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			678	106	464	0	ENST00000289316.2:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000289316	NM_138720.2	23	Cag/Tag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233280	46233280	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0065498-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			183	209	377	0	ENST00000334344.6:c.1498+1G>T		p.X500_splice	ENST00000334344	NM_152641.2	500																																																																																
NF1	4763	MSKCC	GRCh37	17	29422382	29422382	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs786203307		P-0065498-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	228	264	0	ENST00000358273.4:c.55G>T	p.Glu19Ter	p.E19*	ENST00000358273	NM_001042492.2	19	Gag/Tag																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146530	185146530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065498-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			226	290	453	0	ENST00000265026.3:c.161C>T	p.Thr54Ile	p.T54I	ENST00000265026	NM_004721.4	54	aCa/aTa																																																																															
YAP1	10413	MSKCC	GRCh37	11	101984990	101984990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065498-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			245	33	244	0	ENST00000282441.5:c.437G>A	p.Gly146Glu	p.G146E	ENST00000282441	NM_001130145.2	146	gGa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0065701-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			258	224	613	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250883	153250883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0065701-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			94	26	328	0	ENST00000281708.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000281708	NM_033632.3	393	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0065701-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			154	139	354	0	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998898	11998898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065701-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			121	36	319	0	ENST00000353533.5:c.400C>T	p.Arg134Trp	p.R134W	ENST00000353533	NM_003010.3	134	Cgg/Tgg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032541	12032541	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267604739		P-0065701-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			192	52	365	0	ENST00000353533.5:c.977C>T	p.Pro326Leu	p.P326L	ENST00000353533	NM_003010.3	326	cCg/cTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117872	70117872	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065701-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			264	309	549	0	ENST00000245479.2:c.340G>C	p.Val114Leu	p.V114L	ENST00000245479	NM_000346.3	114	Gtg/Ctg																																																																															
TEK	7010	MSKCC	GRCh37	9	27158117	27158117	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760573137		P-0065701-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			373	105	538	0	ENST00000380036.4:c.341G>A	p.Arg114Gln	p.R114Q	ENST00000380036	NM_000459.3	114	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0065701-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			103	133	302	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247377	153247379	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0065701-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			311	109	476	0	ENST00000281708.4:c.1423_1425del	p.Val475del	p.V475del	ENST00000281708	NM_033632.3	475	GTT/-																																																																															
RRAS	6237	MSKCC	GRCh37	19	50139023	50139023	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065701-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			447	100	532	0	ENST00000246792.3:c.540C>A	p.Asp180Glu	p.D180E	ENST00000246792	NM_006270.3	180	gaC/gaA																																																																															
IGF2	3481	MSKCC	GRCh37	11	2161411	2161411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065701-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			367	123	518	0	ENST00000434045.2:c.116G>A	p.Arg39His	p.R39H	ENST00000434045	NM_001127598.1	39	cGc/cAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576754	67576754	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0065701-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			70	66	297	0	ENST00000274335.5:c.837-1G>T		p.X279_splice	ENST00000274335		279																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0065818-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			266	85	376	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0065818-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			161	30	257	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0065818-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			599	101	491	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291020	15291020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065818-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			846	69	628	1	ENST00000263388.2:c.3190G>A	p.Glu1064Lys	p.E1064K	ENST00000263388	NM_000435.2	1064	Gaa/Aaa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198265085	198265085	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065818-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			479	123	457	0	ENST00000335508.6:c.2792A>G	p.Gln931Arg	p.Q931R	ENST00000335508	NM_012433.2	931	cAg/cGg																																																																															
MST1	4485	MSKCC	GRCh37	3	49723585	49723585	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1351426382		P-0065818-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			37	14	44	0	ENST00000449682.2:c.1057G>C	p.Glu353Gln	p.E353Q	ENST00000449682	NM_020998.3	353	Gag/Cag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163205	47163205	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065818-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	63	485	0	ENST00000409792.3:c.2921G>C	p.Arg974Thr	p.R974T	ENST00000409792	NM_014159.6	974	aGa/aCa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89831322	89831322	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065818-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			830	48	597	0	ENST00000389301.3:c.2754G>C	p.Glu918Asp	p.E918D	ENST00000389301	NM_000135.2	918	gaG/gaC																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741872	145741872	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs776528292		P-0065818-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			864	53	615	0	ENST00000428558.2:c.631G>C	p.Asp211His	p.D211H	ENST00000428558	NM_004260.3	211	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577137	7577137	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065925-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	147	468	0	ENST00000269305.4:c.801del	p.Asn268ThrfsTer77	p.N268Tfs*77	ENST00000269305	NM_001126112.2	267	cgG/cg																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544691	86544691	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065925-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	135	559	0	ENST00000262426.4:c.516C>A	p.Phe172Leu	p.F172L	ENST00000262426	NM_001451.2	172	ttC/ttA																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230492905	230492905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs534656022		P-0066012-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			409	184	715	0	ENST00000525115.1:c.287C>T	p.Thr96Met	p.T96M	ENST00000525115		96	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066012-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	118	415	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440757	56440757	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774211426		P-0066012-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			638	222	727	0	ENST00000407977.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000407977		154	cCg/cTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48586262	48586262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876658694		P-0066012-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	101	443	0	ENST00000342988.3:c.931C>T	p.Gln311Ter	p.Q311*	ENST00000342988	NM_005359.5	311	Cag/Tag																																																																															
ERG	2078	MSKCC	GRCh37	21	39817414	39817414	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs542019196		P-0066012-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			579	118	671	0	ENST00000288319.7:c.149G>A	p.Arg50His	p.R50H	ENST00000288319	NM_182918.3	50	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576856	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0066012-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			416	219	703	0	ENST00000269305.4:c.990_991insA	p.Gln331ThrfsTer6	p.Q331Tfs*6	ENST00000269305	NM_001126112.2	330	-/A																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46262382	46262382	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0066012-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			465	159	568	0	ENST00000371998.3:c.964+2T>C		p.X322_splice	ENST00000371998		322																																																																																
RAD50	10111	MSKCC	GRCh37	5	131973799	131973799	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066012-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			448	133	474	0	ENST00000265335.6:c.3502G>C	p.Asp1168His	p.D1168H	ENST00000265335		1168	Gat/Cat																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115820	8115820	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	32	559	0	ENST00000346208.3:c.1166G>T	p.Ser389Ile	p.S389I	ENST00000346208		389	aGc/aTc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435691	18435691	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0066282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	38	377	0	ENST00000266497.5:c.676G>T	p.Glu226Ter	p.E226*	ENST00000266497		226	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0066282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	48	341	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900741	3900741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	57	548	0	ENST00000262367.5:c.355G>T	p.Gly119Cys	p.G119C	ENST00000262367	NM_004380.2	119	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0066282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	45	556	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579592	7579592	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0066282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	38	521	0	ENST00000269305.4:c.97-2A>T		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602688	10602690	+	missense_variant	Missense_Mutation	ONP	CAG	CAG	AAA			P-0066282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	39	612	0	ENST00000171111.5:c.888_890delinsTTT	p.Cys297Phe	p.C297F	ENST00000171111	NM_203500.1	296	cgCTGc/cgTTTc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46714226	46714226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	56	495	0	ENST00000371975.4:c.46G>A	p.Glu16Lys	p.E16K	ENST00000371975	NM_003579.3	16	Gaa/Aaa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243801035	243801035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	46	356	0	ENST00000263826.5:c.439G>T	p.Asp147Tyr	p.D147Y	ENST00000263826	NM_005465.4	147	Gat/Tat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937518	32937518	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs730881582		P-0066282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	36	499	0	ENST00000380152.3:c.8179G>T	p.Ala2727Ser	p.A2727S	ENST00000380152		2727	Gct/Tct																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023781	31023781	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	56	579	0	ENST00000375687.4:c.3266C>G	p.Pro1089Arg	p.P1089R	ENST00000375687	NM_015338.5	1089	cCa/cGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0066330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	126	339	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0066330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	186	474	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0066330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	186	322	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CARM1	10498	MSKCC	GRCh37	19	11019872	11019872	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	31	504	0	ENST00000327064.4:c.547T>G	p.Phe183Val	p.F183V	ENST00000327064	NM_199141.1	183	Ttc/Gtc																																																																															
CTR9	9646	MSKCC	GRCh37	11	10783587	10783587	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	27	336	0	ENST00000361367.2:c.835T>G	p.Phe279Val	p.F279V	ENST00000361367	NM_014633.3	279	Ttt/Gtt																																																																															
EZH2	2146	MSKCC	GRCh37	7	148516746	148516746	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	40	416	0	ENST00000320356.2:c.941A>G	p.Lys314Arg	p.K314R	ENST00000320356	NM_004456.4	314	aAg/aGg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411729	63411729	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	231	274	0	ENST00000330258.3:c.1438G>T	p.Glu480Ter	p.E480*	ENST00000330258	NM_152424.3	480	Gag/Tag																																																																															
ARAF	369	MSKCC	GRCh37	X	47424472	47424472	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	83	266	0	ENST00000377045.4:c.392A>C	p.Lys131Thr	p.K131T	ENST00000377045	NM_001654.4	131	aAg/aCg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573563	48573564	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAAA			P-0066330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	78	431	0	ENST00000342988.3:c.150_153dup	p.Asp52LysfsTer3	p.D52Kfs*3	ENST00000342988	NM_005359.5	49	-/AAAA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0066331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	140	389	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	49	268	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881041	37881042	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0066331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	151	545	1	ENST00000269571.5:c.2372_2373dup	p.Ser792HisfsTer7	p.S792Hfs*7	ENST00000269571		790	-/AC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0066345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	417	421	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs786203436		P-0066345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	253	570	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724542	162724542	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1041487062		P-0066345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	357	577	0	ENST00000367921.3:c.314G>A	p.Arg105His	p.R105H	ENST00000367921	NM_006182.2	105	cGc/cAc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37053520	37053520	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs63750085		P-0066345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	26	443	0	ENST00000231790.2:c.607G>A	p.Asp203Asn	p.D203N	ENST00000231790	NM_000249.3	203	Gat/Aat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877861	151877861	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	136	589	0	ENST00000262189.6:c.7084T>G	p.Ser2362Ala	p.S2362A	ENST00000262189	NM_170606.2	2362	Tca/Gca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0066364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			86	107	282	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879229	151879229	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs763438739		P-0066364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			308	258	628	0	ENST00000262189.6:c.5716C>T	p.Arg1906Ter	p.R1906*	ENST00000262189	NM_170606.2	1906	Cga/Tga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15297919	15297919	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1442385919		P-0066364-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			286	163	557	0	ENST00000263388.2:c.1837A>G	p.Thr613Ala	p.T613A	ENST00000263388	NM_000435.2	613	Aca/Gca																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696449	47696449	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	174	429	0	ENST00000347630.2:c.374T>G	p.Phe125Cys	p.F125C	ENST00000347630	NM_001007230.1	125	tTt/tGt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243858913	243858913	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs866698621		P-0066382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	92	297	0	ENST00000263826.5:c.152T>G	p.Leu51Arg	p.L51R	ENST00000263826	NM_005465.4	51	cTc/cGc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244466	41244466	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80357049		P-0066382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	95	372	0	ENST00000357654.3:c.3082C>T	p.Arg1028Cys	p.R1028C	ENST00000357654	NM_007294.3	1028	Cgt/Tgt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307418	118307418	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	80	240	0	ENST00000534358.1:c.191C>G	p.Ala64Gly	p.A64G	ENST00000534358	NM_005933.3	64	gCg/gGg																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495648	72495648	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0066382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	168	309	0	ENST00000477973.2:c.422A>T	p.Arg142Ter	p.R142*	ENST00000477973	NM_012234.5	142	Aga/Tga																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450340	50450340	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	212	494	0	ENST00000331340.3:c.524G>T	p.Cys175Phe	p.C175F	ENST00000331340	NM_006060.4	175	tGc/tTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	9	269	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	45	444	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																															
TERT	7015	MSKCC	GRCh37	5	1294664	1294664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	27	543	0	ENST00000310581.5:c.337G>A	p.Glu113Lys	p.E113K	ENST00000310581	NM_198253.2	113	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68835629	68835629	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876658932		P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	80	468	0	ENST00000261769.5:c.220C>T	p.Arg74Ter	p.R74*	ENST00000261769	NM_004360.3	74	Cga/Tga																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745476	162745476	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1471671366		P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	42	426	0	ENST00000367921.3:c.1891C>T	p.Arg631Trp	p.R631W	ENST00000367921	NM_006182.2	631	Cgg/Tgg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021828	71021828	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	35	411	0	ENST00000318789.4:c.1531-1G>A		p.X511_splice	ENST00000318789	NM_032682.5	511																																																																																
SYK	6850	MSKCC	GRCh37	9	93641083	93641083	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	25	354	0	ENST00000375746.1:c.1429C>G	p.Gln477Glu	p.Q477E	ENST00000375746	NM_001174167.1	477	Cag/Gag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38064160	38064160	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	64	710	0	ENST00000250448.2:c.18G>C	p.Lys6Asn	p.K6N	ENST00000250448	NM_004496.3	6	aaG/aaC																																																																															
TSC1	7248	MSKCC	GRCh37	9	135802635	135802635	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs118203343		P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	47	420	0	ENST00000298552.3:c.163C>T	p.Gln55Ter	p.Q55*	ENST00000298552	NM_001162426.1	55	Cag/Tag																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489526	40489526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	65	487	0	ENST00000264657.5:c.724G>A	p.Asp242Asn	p.D242N	ENST00000264657	NM_139276.2	242	Gac/Aac																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258542	16258542	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs946117307		P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			750	81	618	0	ENST00000375759.3:c.5807G>A	p.Arg1936Gln	p.R1936Q	ENST00000375759	NM_015001.2	1936	cGa/cAa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127539	55127539	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	41	411	0	ENST00000257290.5:c.327G>C	p.Glu109Asp	p.E109D	ENST00000257290	NM_006206.4	109	gaG/gaC																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512419	149512419	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs942220808		P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	56	548	0	ENST00000261799.4:c.1021G>A	p.Glu341Lys	p.E341K	ENST00000261799	NM_002609.3	341	Gag/Aag																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62303953	62303953	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	G			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	51	434	0	ENST00000482936.1:c.744C>G	p.Ile248Met	p.I248M	ENST00000482936		248	atC/atG																																																																															
TP63	8626	MSKCC	GRCh37	3	189526209	189526209	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767384779		P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	56	579	0	ENST00000264731.3:c.473C>T	p.Ala158Val	p.A158V	ENST00000264731	NM_003722.4	158	gCt/gTt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489537	56489537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			787	56	461	0	ENST00000267101.3:c.2002G>A	p.Gly668Arg	p.G668R	ENST00000267101	NM_001982.3	668	Ggg/Agg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524393	176524393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	41	510	0	ENST00000292408.4:c.2254G>A	p.Glu752Lys	p.E752K	ENST00000292408	NM_213647.1	752	Gag/Aag																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52729226	52729226	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	53	487	0	ENST00000322088.6:c.1762C>G	p.Leu588Val	p.L588V	ENST00000322088	NM_014225.5	588	Ctc/Gtc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118830	115118853	+	inframe_deletion	In_Frame_Del	DEL	TCCACCGAGAATTGTGAAATTTAT	TCCACCGAGAATTGTGAAATTTAT	-			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	40	486	0	ENST00000257566.3:c.488_511del	p.Tyr163_Met171delinsLeu	p.Y163_M171delinsL	ENST00000257566	NM_016569.3	163	tATAAATTTCACAATTCTCGGTGGAtg/ttg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149450094	149450094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	69	472	0	ENST00000286301.3:c.1123G>A	p.Glu375Lys	p.E375K	ENST00000286301	NM_005211.3	375	Gag/Aag																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2039549	2039549	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			706	53	509	0	ENST00000349721.2:c.439C>T	p.Gln147Ter	p.Q147*	ENST00000349721	NM_003070.3	147	Cag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112280	115112281	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	31	494	0	ENST00000257566.3:c.1458_1459dup	p.Asp487GlyfsTer146	p.D487Gfs*146	ENST00000257566	NM_016569.3	487	gac/gGGac																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78931424	78931424	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	51	481	0	ENST00000306801.3:c.3371G>A	p.Gly1124Glu	p.G1124E	ENST00000306801	NM_020761.2	1124	gGa/gAa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582876	95582876	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	30	419	0	ENST00000343455.3:c.1666C>G	p.Pro556Ala	p.P556A	ENST00000343455	NM_177438.2	556	Ccc/Gcc																																																																															
CTR9	9646	MSKCC	GRCh37	11	10800428	10800428	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	44	461	0	ENST00000361367.2:c.3298G>C	p.Glu1100Gln	p.E1100Q	ENST00000361367	NM_014633.3	1100	Gag/Cag																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2097727	2097727	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1421779919		P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	33	405	0	ENST00000219066.1:c.122G>A	p.Arg41Lys	p.R41K	ENST00000219066	NM_002528.5	41	aGa/aAa																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628575	90628575	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs774623780		P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	42	501	0	ENST00000330062.3:c.1012G>T	p.Asp338Tyr	p.D338Y	ENST00000330062	NM_002168.2	338	Gat/Tat																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660831	227660831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	50	601	0	ENST00000305123.5:c.2624G>T	p.Arg875Leu	p.R875L	ENST00000305123	NM_005544.2	875	cGa/cTa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817754	3817754	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	55	385	0	ENST00000262367.5:c.3217C>G	p.Gln1073Glu	p.Q1073E	ENST00000262367	NM_004380.2	1073	Cag/Gag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258538	16258538	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			748	80	625	0	ENST00000375759.3:c.5803G>C	p.Glu1935Gln	p.E1935Q	ENST00000375759	NM_015001.2	1935	Gag/Cag																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175958595	175958595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	36	400	0	ENST00000367669.3:c.1750G>A	p.Asp584Asn	p.D584N	ENST00000367669	NM_022457.5	584	Gat/Aat																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858539	27858539	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			742	53	556	0	ENST00000359303.2:c.32C>G	p.Ser11Cys	p.S11C	ENST00000359303	NM_003535.2	11	tCt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112179541	112179541	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	38	428	0	ENST00000257430.4:c.8250G>C	p.Glu2750Asp	p.E2750D	ENST00000257430	NM_000038.5	2750	gaG/gaC																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287544	33287544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			905	77	512	0	ENST00000374542.5:c.1553C>T	p.Ser518Leu	p.S518L	ENST00000374542	NM_001141970.1	518	tCa/tTa																																																																															
ATM	472	MSKCC	GRCh37	11	108124682	108124682	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	36	417	0	ENST00000278616.4:c.2040C>G	p.Phe680Leu	p.F680L	ENST00000278616	NM_000051.3	680	ttC/ttG																																																																															
ATRX	546	MSKCC	GRCh37	X	76937230	76937230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	16	406	0	ENST00000373344.5:c.3518C>T	p.Ser1173Leu	p.S1173L	ENST00000373344	NM_000489.3	1173	tCa/tTa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118362480	118362480	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	36	388	0	ENST00000534358.1:c.4841C>G	p.Ser1614Cys	p.S1614C	ENST00000534358	NM_005933.3	1614	tCt/tGt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21630765	21630765	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	29	361	0	ENST00000421138.2:c.839C>G	p.Ser280Cys	p.S280C	ENST00000421138		280	tCt/tGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830866	72830870	+	frameshift_variant	Frame_Shift_Del	DEL	CGGAC	CGGAC	-			P-0066395-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	158	681	0	ENST00000268489.5:c.5711_5715del	p.Gly1904GlufsTer23	p.G1904Efs*23	ENST00000268489	NM_006885.3	1904	gGTCCG/g																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344435	118344435	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377416766		P-0066395-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	145	550	0	ENST00000534358.1:c.2561C>T	p.Ala854Val	p.A854V	ENST00000534358	NM_005933.3	854	gCc/gTc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942794	44942794	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066395-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	108	235	0	ENST00000377967.4:c.3375del	p.Ile1126TyrfsTer4	p.I1126Yfs*4	ENST00000377967	NM_021140.2	1125	aCc/ac																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752396	57752396	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066395-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	111	360	0	ENST00000274289.3:c.1177G>C	p.Glu393Gln	p.E393Q	ENST00000274289	NM_006622.3	393	Gaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934574		P-0066397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	281	524	2	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0066397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	106	351	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925316	114925317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769592153		P-0066397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	173	353	7	ENST00000543371.1:c.1403dup	p.Cys469ValfsTer8	p.C469Vfs*8	ENST00000543371	NM_001198531.1	465	aga/agAa																																																																															
MGA	23269	MSKCC	GRCh37	15	42054540	42054541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0066397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	155	327	3	ENST00000219905.7:c.7731dup	p.Asp2578ArgfsTer45	p.D2578Rfs*45	ENST00000219905	NM_001164273.1	2575	aga/agAa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591110	67591110	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	93	374	1	ENST00000274335.5:c.1703C>G	p.Pro568Arg	p.P568R	ENST00000274335		568	cCa/cGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	84	328	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265810	41266364	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATG	TCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATG	-			P-0066397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			46	95	62	0	ENST00000349496.5:c.14-204_242-78del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41278091	41278091	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	231	513	1	ENST00000349496.5:c.1967C>A	p.Ala656Asp	p.A656D	ENST00000349496	NM_001904.3	656	gCt/gAt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061007	38061022	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCGGGGGCCGGCGC	GCCCGGGGGCCGGCGC	-			P-0066413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	278	476	0	ENST00000250448.2:c.967_982del	p.Ala323ProfsTer22	p.A323Pfs*22	ENST00000250448	NM_004496.3	323	GCGCCGGCCCCCGGGCcc/cc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115897	8115898	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0066413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	268	484	0	ENST00000346208.3:c.1244dup	p.Met415IlefsTer92	p.M415Ifs*92	ENST00000346208		415	atg/aTtg																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518094	69518094	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	206	378	0	ENST00000294312.3:c.271G>C	p.Ala91Pro	p.A91P	ENST00000294312	NM_005117.2	91	Gcc/Ccc																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0066415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			45	219	523	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519985		P-0066415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			63	298	620	0	ENST00000269305.4:c.857A>G	p.Glu286Gly	p.E286G	ENST00000269305	NM_001126112.2	286	gAa/gGa																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797890	45797890	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146044717		P-0066415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	40	645	0	ENST00000372115.3:c.839G>A	p.Arg280His	p.R280H	ENST00000372115	NM_001048171.1	280	cGc/cAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123788	11123788	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1064795105		P-0066415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	28	438	0	ENST00000344626.4:c.2438C>T	p.Ser813Leu	p.S813L	ENST00000344626	NM_003072.3	813	tCa/tTa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925319	114925319	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	169	440	0	ENST00000543371.1:c.1397A>C	p.Lys466Thr	p.K466T	ENST00000543371	NM_001198531.1	466	aAa/aCa																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86545140	86545140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	90	615	0	ENST00000262426.4:c.965C>T	p.Pro322Leu	p.P322L	ENST00000262426	NM_001451.2	322	cCa/cTa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95572101	95572101	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1060503605		P-0066415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	43	449	0	ENST00000343455.3:c.3007C>T	p.Arg1003Ter	p.R1003*	ENST00000343455	NM_177438.2	1003	Cga/Tga																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781851	9781851	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746943903		P-0066425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	41	347	0	ENST00000377346.4:c.1988G>A	p.Arg663His	p.R663H	ENST00000377346	NM_005026.3	663	cGc/cAc																																																																															
IDH1	3417	MSKCC	GRCh37	2	209108221	209108221	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	41	413	0	ENST00000345146.2:c.628A>C	p.Ser210Arg	p.S210R	ENST00000345146	NM_005896.2	210	Agc/Cgc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120791	115120791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	57	482	0	ENST00000257566.3:c.215C>T	p.Ala72Val	p.A72V	ENST00000257566	NM_016569.3	72	gCc/gTc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1795770	1795770	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0066425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	78	744	0	ENST00000260795.2:c.109G>C	p.Glu37Gln	p.E37Q	ENST00000260795		37	Gaa/Caa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0066431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	265	472	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68353763	68353763	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	25	328	0	ENST00000487270.1:c.598A>T	p.Ile200Phe	p.I200F	ENST00000487270	NM_133509.3	200	Atc/Ttc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038546	47038561	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TGGCGTGCCCAAGTCA	TGGCGTGCCCAAGTCA	-			P-0066431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	89	591	0	ENST00000329236.7:c.477_492del	p.Cys159TrpfsTer25	p.C159Wfs*25	ENST00000329236	NM_001204466.1	159	tgTGGCGTGCCCAAGTCA/tg																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1325378	1325378	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	34	351	0	ENST00000381566.1:c.297C>G	p.Ile99Met	p.I99M	ENST00000381566		99	atC/atG																																																																															
STK11	6794	MSKCC	GRCh37	19	1220652	1220653	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0066461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	129	402	0	ENST00000326873.7:c.672dup	p.Ala225CysfsTer41	p.A225Cfs*41	ENST00000326873	NM_000455.4	224	att/aTtt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8375978	8375978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	51	349	0	ENST00000356435.5:c.4619C>T	p.Thr1540Ile	p.T1540I	ENST00000356435		1540	aCc/aTc																																																																															
MSI1	4440	MSKCC	GRCh37	12	120783979	120783979	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112244011		P-0066461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	124	423	0	ENST00000257552.2:c.1006G>A	p.Ala336Thr	p.A336T	ENST00000257552	NM_002442.3	336	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	108	295	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411786	63411786	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	38	497	0	ENST00000330258.3:c.1381C>A	p.Gln461Lys	p.Q461K	ENST00000330258	NM_152424.3	461	Caa/Aaa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37649045	37649045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	92	372	0	ENST00000447079.4:c.2150G>A	p.Ser717Asn	p.S717N	ENST00000447079	NM_015083.1	717	aGc/aAc																																																																															
CENPA	1058	MSKCC	GRCh37	2	27009137	27009151	+	inframe_deletion	In_Frame_Del	DEL	GGCCCCTCCCGGCGG	GGCCCCTCCCGGCGG	-	rs929685736		P-0066461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	23	274	0	ENST00000335756.4:c.82_96del	p.Arg28_Ser32del	p.R28_S32del	ENST00000335756	NM_001809.3	25	GGCCCCTCCCGGCGG/-																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434455	110434455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	61	339	0	ENST00000375856.3:c.3946C>T	p.Pro1316Ser	p.P1316S	ENST00000375856	NM_003749.2	1316	Cct/Tct																																																																															
ATM	472	MSKCC	GRCh37	11	108205715	108205715	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs28942103		P-0066461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	110	334	0	ENST00000278616.4:c.8030A>G	p.Tyr2677Cys	p.Y2677C	ENST00000278616	NM_000051.3	2677	tAt/tGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8492870	8492870	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	32	322	0	ENST00000356435.5:c.2459C>A	p.Thr820Asn	p.T820N	ENST00000356435		820	aCt/aAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602622	10602629	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGCAT	CAGGGCAT	-			P-0066461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	123	430	0	ENST00000171111.5:c.949_956del	p.Met317ProfsTer30	p.M317Pfs*30	ENST00000171111	NM_203500.1	317	ATGCCCTGc/c																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	TTC	rs727503016		P-0066462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	9	371	2	ENST00000275493.2:c.2237_2251delinsTTC	p.Glu746_Thr751delinsValPro	p.E746_T751delinsVP	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gTTCca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0066471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	223	474	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0066471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	20	442	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0066471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	21	283	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710676	114710676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	53	358	0	ENST00000543371.1:c.161C>T	p.Thr54Met	p.T54M	ENST00000543371	NM_001198531.1	54	aCg/aTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202141587	202141587	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771150445		P-0066471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	9	377	0	ENST00000358485.4:c.875G>A	p.Arg292Gln	p.R292Q	ENST00000358485	NM_001080125.1	292	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112116587	112116587	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	22	334	0	ENST00000257430.4:c.636del	p.Lys212AsnfsTer7	p.K212Nfs*7	ENST00000257430	NM_000038.5	211	gAa/ga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247246	153247246	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	70	414	0	ENST00000281708.4:c.1556A>G	p.Tyr519Cys	p.Y519C	ENST00000281708	NM_033632.3	519	tAt/tGt																																																																															
AR	367	MSKCC	GRCh37	X	66941695	66941695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768366293		P-0066471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	62	387	0	ENST00000374690.3:c.2339G>A	p.Arg780Gln	p.R780Q	ENST00000374690	NM_000044.3	780	cGg/cAg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880998	37880998	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs144434331		P-0066307-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1142	24	483	0	ENST00000269571.5:c.2327G>T	p.Gly776Val	p.G776V	ENST00000269571		776	gGt/gTt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988262	36988262	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066307-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	135	423	0	ENST00000354822.5:c.391C>T	p.Gln131Ter	p.Q131*	ENST00000354822	NM_001079668.2	131	Cag/Tag																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986975	36986975	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066307-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	115	380	0	ENST00000354822.5:c.714G>C	p.Trp238Cys	p.W238C	ENST00000354822	NM_001079668.2	238	tgG/tgC																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874287	155874290	+	protein_altering_variant	In_Frame_Del	DEL	ACTC	ACTC	T			P-0066307-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	85	329	0	ENST00000368323.3:c.241_244delinsA	p.Glu81_Phe82delinsIle	p.E81_F82delinsI	ENST00000368323	NM_006912.5	81	GAGTtt/Att																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066304-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	29	274	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs747342068		P-0066304-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	59	412	0	ENST00000269305.4:c.394A>C	p.Lys132Gln	p.K132Q	ENST00000269305	NM_001126112.2	132	Aag/Cag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959067	2959067	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376539147		P-0066304-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	53	404	0	ENST00000396946.4:c.2449G>A	p.Ala817Thr	p.A817T	ENST00000396946	NM_032415.4	817	Gcg/Acg																																																																															
AKT1	207	MSKCC	GRCh37	14	105242038	105242038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023375-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			378	100	196	0	ENST00000349310.3:c.386C>T	p.Ser129Leu	p.S129L	ENST00000349310	NM_001014432.1	129	tCa/tTa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25457249	25457249	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs775365749		P-0023375-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			471	51	148	0	ENST00000264709.3:c.2638A>G	p.Met880Val	p.M880V	ENST00000264709	NM_175629.2	880	Atg/Gtg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38981989	38981989	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023375-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			525	113	133	0	ENST00000357387.3:c.733C>T	p.Arg245Ter	p.R245*	ENST00000357387	NM_152756.3	245	Cga/Tga																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30129719	30129719	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1379935159		P-0023375-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			490	135	195	0	ENST00000263025.4:c.494G>A	p.Arg165Gln	p.R165Q	ENST00000263025	NM_002746.2	165	cGa/cAa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004919	16004919	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023375-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	50	178	0	ENST00000268712.3:c.2335A>T	p.Ser779Cys	p.S779C	ENST00000268712	NM_006311.3	779	Agt/Tgt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786466	135786481	+	frameshift_variant	Frame_Shift_Del	DEL	ATACCACAAACCATAG	ATACCACAAACCATAG	-			P-0023375-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			463	50	151	0	ENST00000298552.3:c.1049_1064del	p.Ser350Ter	p.S350*	ENST00000298552	NM_001162426.1	350	tCTATGGTTTGTGGTATg/tg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022685	31022685	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023375-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			469	38	201	0	ENST00000375687.4:c.2170del	p.Leu724Ter	p.L724*	ENST00000375687	NM_015338.5	724	Ctg/tg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216319	2216319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023375-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			270	93	191	0	ENST00000398665.3:c.1963G>A	p.Glu655Lys	p.E655K	ENST00000398665	NM_032482.2	655	Gag/Aag																																																																															
CCND3	896	MSKCC	GRCh37	6	41903703	41903703	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	ACA			P-0023375-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			410	104	192	0	ENST00000372991.4:c.854delinsTGT	p.Thr285MetfsTer2	p.T285Mfs*2	ENST00000372991	NM_001760.3	285	aCa/aTGTa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53253908	53253928	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCCCGGGGCTTACCGCGGGT	GCCCCGGGGCTTACCGCGGGT	CCCCGGCCCCG			P-0023375-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			214	77	119	2	ENST00000375401.3:c.144_150+14delinsCGGGGCCGGGG		p.X48_splice	ENST00000375401	NM_004187.3	48																																																																																
LMO1	4004	MSKCC	GRCh37	11	8252045	8252045	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060472-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			445	62	677	0	ENST00000335790.3:c.32C>A	p.Pro11Gln	p.P11Q	ENST00000335790	NM_002315.2	11	cCg/cAg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102207657	102207657	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1308037938		P-0060472-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			383	21	521	0	ENST00000263464.3:c.1639del	p.Gln547AsnfsTer21	p.Q547Nfs*21	ENST00000263464	NM_001165.4	547	Caa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579431	7579431	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060472-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			469	55	752	0	ENST00000269305.4:c.256del	p.Ala86HisfsTer37	p.A86Hfs*37	ENST00000269305	NM_001126112.2	86	Gca/ca																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22221706	22221706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060472-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			518	46	547	0	ENST00000215832.6:c.25G>A	p.Ala9Thr	p.A9T	ENST00000215832	NM_002745.4	9	Gcg/Acg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249465	153249465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060472-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			301	46	594	0	ENST00000281708.4:c.1313C>A	p.Ser438Tyr	p.S438Y	ENST00000281708	NM_033632.3	438	tCt/tAt																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317551	1317551	+	downstream_gene_variant	3'Flank	SNP	T	T	C			P-0060472-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			230	31	410	0				ENST00000381566																																																																																		
RET	5979	MSKCC	GRCh37	10	43596051	43596051	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060472-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			402	48	615	0	ENST00000355710.3:c.218A>G	p.Tyr73Cys	p.Y73C	ENST00000355710	NM_020975.4	73	tAc/tGc																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112771496	112771496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060472-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			410	52	650	0	ENST00000369452.4:c.1669C>T	p.Pro557Ser	p.P557S	ENST00000369452	NM_007373.3	557	Cca/Tca																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858635	57858635	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0060472-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			458	53	659	0	ENST00000228682.2:c.373T>A	p.Ser125Thr	p.S125T	ENST00000228682	NM_005269.2	125	Tcc/Acc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934623	9934623	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0060472-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			323	45	531	0	ENST00000330684.3:c.1532C>A	p.Ser511Ter	p.S511*	ENST00000330684	NM_001134407.1	511	tCg/tAg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99185105	99185105	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0060472-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	38	519	0	ENST00000074304.5:c.2507A>T	p.Gln836Leu	p.Q836L	ENST00000074304	NM_001134224.1	836	cAg/cTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566713	212566713	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0060472-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			370	54	579	0	ENST00000342788.4:c.1468A>T	p.Asn490Tyr	p.N490Y	ENST00000342788	NM_005235.2	490	Aac/Tac																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430165	181430165	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0060472-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			282	20	443	0	ENST00000325404.1:c.17A>C	p.Glu6Ala	p.E6A	ENST00000325404	NM_003106.3	6	gAg/gCg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528981	157528981	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060472-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	46	639	0	ENST00000346085.5:c.6706G>T	p.Ala2236Ser	p.A2236S	ENST00000346085	NM_020732.3	2236	Gca/Tca																																																																															
BRAF	673	MSKCC	GRCh37	7	140494175	140494175	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060472-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			480	42	666	0	ENST00000288602.6:c.1073G>T	p.Gly358Val	p.G358V	ENST00000288602	NM_004333.4	358	gGg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151841910	151841910	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060472-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			466	56	691	0	ENST00000262189.6:c.14231G>C	p.Gly4744Ala	p.G4744A	ENST00000262189	NM_170606.2	4744	gGa/gCa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602354	10602354	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061233-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			392	143	558	0	ENST00000171111.5:c.1224del	p.Met409Ter	p.M409*	ENST00000171111	NM_203500.1	408	ccC/cc																																																																															
B2M	567	MSKCC	GRCh37	15	45007798	45007801	+	frameshift_variant	Frame_Shift_Del	DEL	TCTA	TCTA	-			P-0061233-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			335	109	427	0	ENST00000558401.1:c.248_251del	p.Tyr83SerfsTer19	p.Y83Sfs*19	ENST00000558401	NM_004048.2	82	tTCTAt/tt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527931	157527931	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061233-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			329	138	539	0	ENST00000346085.5:c.5656G>T	p.Gly1886Trp	p.G1886W	ENST00000346085	NM_020732.3	1886	Ggg/Tgg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576214	88576214	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750565995		P-0061233-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			419	96	375	0	ENST00000360948.2:c.1459G>A	p.Gly487Ser	p.G487S	ENST00000360948	NM_001012338.2	487	Ggc/Agc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031965	10031965	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061233-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			432	48	433	0	ENST00000330684.3:c.858C>A	p.Tyr286Ter	p.Y286*	ENST00000330684	NM_001134407.1	286	taC/taA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0061233-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			295	63	283	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42028759	42028759	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061233-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			341	136	474	1	ENST00000219905.7:c.4297C>T	p.Gln1433Ter	p.Q1433*	ENST00000219905	NM_001164273.1	1433	Cag/Tag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16040633	16040633	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0061233-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			281	31	266	0	ENST00000268712.3:c.1501A>T	p.Arg501Ter	p.R501*	ENST00000268712	NM_006311.3	501	Aga/Tga																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2191135	2191135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061233-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			368	128	539	0	ENST00000398665.3:c.389C>T	p.Pro130Leu	p.P130L	ENST00000398665	NM_032482.2	130	cCc/cTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097056	11097056	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061233-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			365	136	520	0	ENST00000344626.4:c.547C>T	p.Gln183Ter	p.Q183*	ENST00000344626	NM_003072.3	183	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577041	7577041	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063347-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			706	38	579	0	ENST00000269305.4:c.897del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	299	ctG/ct																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984782	11984782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1164096095		P-0063347-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			405	9	313	0	ENST00000353533.5:c.328C>T	p.Arg110Ter	p.R110*	ENST00000353533	NM_003010.3	110	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0063347-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			594	44	406	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0065499-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			195	153	375	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0065499-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			595	476	407	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375142	31375142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs537913125		P-0065499-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			421	220	498	0	ENST00000328111.2:c.539C>T	p.Thr180Met	p.T180M	ENST00000328111	NM_006892.3	180	aCg/aTg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844722	156844722	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs986498490		P-0065499-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			544	194	551	0	ENST00000524377.1:c.1276G>A	p.Val426Ile	p.V426I	ENST00000524377	NM_002529.3	426	Gtc/Atc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918306	44918306	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs777683511		P-0065499-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			105	110	128	0	ENST00000377967.4:c.931A>G	p.Ile311Val	p.I311V	ENST00000377967	NM_021140.2	311	Att/Gtt																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032057	26032057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065499-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			604	86	489	0	ENST00000244661.2:c.232G>A	p.Asp78Asn	p.D78N	ENST00000244661	NM_003537.3	78	Gac/Aac																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112769112	112769112	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065499-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			274	51	305	0	ENST00000369452.4:c.1391C>G	p.Pro464Arg	p.P464R	ENST00000369452	NM_007373.3	464	cCa/cGa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372073	45372079	+	protein_altering_variant	In_Frame_Del	DEL	ATCTCTG	ATCTCTG	TACA			P-0065499-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			374	20	333	0	ENST00000262160.6:c.1090_1096delinsTGTA	p.Gln364_Tyr366delinsCysAsn	p.Q364_Y366delinsCN	ENST00000262160	NM_005901.5	364	CAGAGATat/TGTAat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0065700-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			340	53	222	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779451	3779451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065700-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1083	185	585	0	ENST00000262367.5:c.5597G>T	p.Arg1866Leu	p.R1866L	ENST00000262367	NM_004380.2	1866	cGc/cTc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933181	39933181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065700-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			804	101	528	0	ENST00000378444.4:c.1418G>A	p.Ser473Asn	p.S473N	ENST00000378444	NM_001123385.1	473	aGt/aAt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061319	38061319	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065700-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			756	61	517	0	ENST00000250448.2:c.670T>C	p.Phe224Leu	p.F224L	ENST00000250448	NM_004496.3	224	Ttc/Ctc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0066014-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			787	53	379	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764146326		P-0066014-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			775	46	372	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066014-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			487	16	243	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106873	27106873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066014-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1062	44	0	0	ENST00000324856.7:c.6484G>A	p.Val2162Met	p.V2162M	ENST00000324856	NM_006015.4	2162	Gtg/Atg																																																																															
RB1	5925	MSKCC	GRCh37	13	48941648	48941648	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913300		P-0066138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	70	284	0	ENST00000267163.4:c.958C>T	p.Arg320Ter	p.R320*	ENST00000267163	NM_000321.2	320	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112111363	112111363	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	36	318	0	ENST00000257430.4:c.460G>C	p.Glu154Gln	p.E154Q	ENST00000257430	NM_000038.5	154	Gaa/Caa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46211608	46211608	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	45	395	1	ENST00000334344.6:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000334344	NM_152641.2	192	Caa/Taa																																																																															
MET	4233	MSKCC	GRCh37	7	116411884	116411893	+	intron_variant	Intron	DEL	TCTTTCTCTC	TCTTTCTCTC	-			P-0066138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	187	528	0	ENST00000397752.3:c.2888-18_2888-9del		p.*963*	ENST00000397752	NM_000245.2																																																																																	
HIST1H1C	3006	MSKCC	GRCh37	6	26056039	26056039	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs61742488		P-0066138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	75	535	0	ENST00000343677.2:c.618G>C	p.Lys206Asn	p.K206N	ENST00000343677	NM_005319.3	206	aaG/aaC																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302794	15302794	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	36	621	0	ENST00000263388.2:c.656del	p.Thr219IlefsTer17	p.T219Ifs*17	ENST00000263388	NM_000435.2	219	aCt/at																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821965	72821965	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150064087		P-0066138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	92	524	0	ENST00000268489.5:c.10210C>T	p.Pro3404Ser	p.P3404S	ENST00000268489	NM_006885.3	3404	Ccc/Tcc																																																																															
USP8	9101	MSKCC	GRCh37	15	50773822	50773822	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	52	508	0	ENST00000307179.4:c.1363C>G	p.Leu455Val	p.L455V	ENST00000307179		455	Ctc/Gtc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115275414	115275414	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	39	457	0	ENST00000438362.2:c.999C>G	p.Ile333Met	p.I333M	ENST00000438362	NM_001242891.1	333	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0066245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	183	401	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2111885	2111885	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45517154		P-0066245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	413	402	1	ENST00000219476.3:c.1133C>T	p.Pro378Leu	p.P378L	ENST00000219476	NM_000548.3	378	cCg/cTg																																																																															
MYC	4609	MSKCC	GRCh37	8	128750638	128750638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			926	202	462	0	ENST00000377970.2:c.175G>A	p.Ala59Thr	p.A59T	ENST00000377970	NM_002467.4	59	Gcg/Acg																																																																															
MPL	4352	MSKCC	GRCh37	1	43803534	43803535	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0066245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	183	509	0	ENST00000372470.3:c.15_16delinsAA	p.Leu6Ile	p.L6I	ENST00000372470	NM_005373.2	5	gcCCtc/gcAAtc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910334	29910334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	282	475	0	ENST00000376809.5:c.4G>T	p.Ala2Ser	p.A2S	ENST00000376809	NM_002116.7	2	Gcc/Tcc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066539	94066539	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066245-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	203	471	0	ENST00000369303.4:c.1220C>G	p.Ala407Gly	p.A407G	ENST00000369303	NM_004440.3	407	gCc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577113	7577113	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	221	391	0	ENST00000269305.4:c.825T>G	p.Cys275Trp	p.C275W	ENST00000269305	NM_001126112.2	275	tgT/tgG																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691187		P-0066254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	222	423	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	157	255	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111882	56111882	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0066254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	169	340	0	ENST00000399503.3:c.482G>C	p.Gly161Ala	p.G161A	ENST00000399503	NM_005921.1	161	gGt/gCt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130305	11130305	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0066254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	23	374	0	ENST00000344626.4:c.2545del	p.Arg849GlyfsTer9	p.R849Gfs*9	ENST00000344626	NM_003072.3	848	ctC/ct																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672303	30672303	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066255-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	131	648	0	ENST00000376406.3:c.4657T>A	p.Ser1553Thr	p.S1553T	ENST00000376406	NM_014641.2	1553	Tct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7578195	7578197	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0066257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	29	401	0	ENST00000269305.4:c.652_654del	p.Val218del	p.V218del	ENST00000269305	NM_001126112.2	218	GTG/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0066257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	17	237	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593485	48593485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	39	296	0	ENST00000342988.3:c.1236C>A	p.Tyr412Ter	p.Y412*	ENST00000342988	NM_005359.5	412	taC/taA																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262559	16262559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	30	329	0	ENST00000375759.3:c.9824G>A	p.Ser3275Asn	p.S3275N	ENST00000375759	NM_015001.2	3275	aGt/aAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151851156	151851156	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	70	339	0	ENST00000262189.6:c.12215del	p.Pro4072GlnfsTer11	p.P4072Qfs*11	ENST00000262189	NM_170606.2	4072	cCa/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0066258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	40	265	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577520	7577520	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1330865474		P-0066258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	145	328	0	ENST00000269305.4:c.761T>G	p.Ile254Ser	p.I254S	ENST00000269305	NM_001126112.2	254	aTc/aGc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0066258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	317	470	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057658	27057658	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	139	410	0	ENST00000324856.7:c.1366C>T	p.Gln456Ter	p.Q456*	ENST00000324856	NM_006015.4	456	Caa/Taa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477184	67477184	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1320208623		P-0066270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	38	613	0	ENST00000327367.4:c.991G>A	p.Val331Ile	p.V331I	ENST00000327367	NM_005902.3	331	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	304	688	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0066270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	162	394	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
CCNE1	898	MSKCC	GRCh37	19	30312684	30312684	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	187	441	0	ENST00000262643.3:c.665C>A	p.Ser222Ter	p.S222*	ENST00000262643	NM_001238.2	222	tCa/tAa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552869	106552869	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	283	671	0	ENST00000369096.4:c.834G>T	p.Lys278Asn	p.K278N	ENST00000369096	NM_001198.3	278	aaG/aaT																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87636297	87636297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	221	600	0	ENST00000277120.3:c.2462C>T	p.Thr821Ile	p.T821I	ENST00000277120		821	aCc/aTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0066271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	51	436	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118392092	118392092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	52	528	0	ENST00000534358.1:c.11603C>T	p.Ser3868Phe	p.S3868F	ENST00000534358	NM_005933.3	3868	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0066272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	137	621	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18499579	18499579	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	93	489	0	ENST00000266497.5:c.1434G>C	p.Leu478Phe	p.L478F	ENST00000266497		478	ttG/ttC																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812319	212812319	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	184	549	0	ENST00000342788.4:c.257A>T	p.Tyr86Phe	p.Y86F	ENST00000342788	NM_005235.2	86	tAc/tTc																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47595304	47595305	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0066272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	35	528	0	ENST00000395288.2:c.734_735del	p.Lys245ArgfsTer18	p.K245Rfs*18	ENST00000395288	NM_016506.5	245	aAA/a																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670732	134670732	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	119	714	0	ENST00000398015.3:c.643A>G	p.Ser215Gly	p.S215G	ENST00000398015	NM_004441.4	215	Agc/Ggc																																																																															
KDR	3791	MSKCC	GRCh37	4	55963854	55963854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	556	451	0	ENST00000263923.4:c.2589G>T	p.Arg863Ser	p.R863S	ENST00000263923	NM_002253.2	863	agG/agT																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198288633	198288633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	39	516	0	ENST00000335508.6:c.94G>T	p.Gly32Cys	p.G32C	ENST00000335508	NM_012433.2	32	Ggc/Tgc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47641418	47641418	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs563410947		P-0066272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	64	359	0	ENST00000233146.2:c.803C>T	p.Ser268Leu	p.S268L	ENST00000233146	NM_000251.2	268	tCa/tTa																																																																															
TET1	80312	MSKCC	GRCh37	10	70406141	70406141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	77	590	0	ENST00000373644.4:c.3655A>G	p.Ile1219Val	p.I1219V	ENST00000373644	NM_030625.2	1219	Ata/Gta																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18443922	18443922	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0066272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	33	436	0	ENST00000266497.5:c.895C>T	p.Gln299Ter	p.Q299*	ENST00000266497		299	Caa/Taa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508881	106508881	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	TT			P-0066272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			688	89	653	0	ENST00000359195.3:c.875delinsTT	p.Trp292PhefsTer37	p.W292Ffs*37	ENST00000359195	NM_002649.2	292	tGg/tTTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8317878	8317878	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151311972		P-0066274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	150	451	0	ENST00000356435.5:c.5735C>T	p.Thr1912Met	p.T1912M	ENST00000356435		1912	aCg/aTg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696638	47696638	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	70	425	0	ENST00000347630.2:c.310T>A	p.Phe104Ile	p.F104I	ENST00000347630	NM_001007230.1	104	Ttc/Atc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44936072	44936082	+	splice_donor_variant,intron_variant	Splice_Site	DEL	GTGAGTCTGAA	GTGAGTCTGAA	-			P-0066274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			56	12	158	0	ENST00000377967.4:c.2832+1_2832+11del		p.X944_splice	ENST00000377967	NM_021140.2	944																																																																																
CHEK2	11200	MSKCC	GRCh37	22	29121321	29121321	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	48	442	0	ENST00000328354.6:c.354C>A	p.Asp118Glu	p.D118E	ENST00000328354	NM_007194.3	118	gaC/gaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			78	137	406	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs879253942		P-0066275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	403	524	0	ENST00000269305.4:c.794T>C	p.Leu265Pro	p.L265P	ENST00000269305	NM_001126112.2	265	cTg/cCg																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51507431	51507431	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0066275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	244	425	0	ENST00000260433.2:c.859-2A>G		p.X287_splice	ENST00000260433		287																																																																																
PAK7	57144	MSKCC	GRCh37	20	9561063	9561063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	205	594	0	ENST00000353224.5:c.719C>T	p.Ala240Val	p.A240V	ENST00000353224	NM_177990.2	240	gCa/gTa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390180	89390180	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1273	177	530	0	ENST00000336596.2:c.929A>C	p.Tyr310Ser	p.Y310S	ENST00000336596	NM_005233.5	310	tAc/tCc																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0066311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	141	517	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55151625	55151625	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs571523023		P-0066311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	79	315	0	ENST00000257290.5:c.2411G>A	p.Arg804Gln	p.R804Q	ENST00000257290	NM_006206.4	804	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0066311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	69	317	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123325170	123325170	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371358242		P-0066311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	148	458	0	ENST00000358487.5:c.158C>T	p.Ala53Val	p.A53V	ENST00000358487	NM_000141.4	53	gCg/gTg																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588877	69588877	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1179344852		P-0066311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	70	441	0	ENST00000168712.1:c.359C>T	p.Pro120Leu	p.P120L	ENST00000168712	NM_002007.2	120	cCc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0066311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	242	361	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265565	152265565	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	120	424	0	ENST00000206249.3:c.1018G>T	p.Ala340Ser	p.A340S	ENST00000206249	NM_000125.3	340	Gct/Tct																																																																															
NF1	4763	MSKCC	GRCh37	17	29556254	29556254	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	134	443	0	ENST00000358273.4:c.2621A>C	p.Lys874Thr	p.K874T	ENST00000358273	NM_001042492.2	874	aAg/aCg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533011	63533012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTCA			P-0066311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	141	444	0	ENST00000307078.5:c.1878_1882dup	p.Arg628LeufsTer63	p.R628Lfs*63	ENST00000307078	NM_004655.3	628	cgg/cTGAGCgg																																																																															
FANCC	2176	MSKCC	GRCh37	9	97869460	97869460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	156	468	1	ENST00000289081.3:c.1421G>A	p.Gly474Asp	p.G474D	ENST00000289081	NM_000136.2	474	gGc/gAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298090	15298090	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	97	470	0	ENST00000263388.2:c.1666C>A	p.His556Asn	p.H556N	ENST00000263388	NM_000435.2	556	Cat/Aat																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25964905	25964907	+	inframe_deletion	In_Frame_Del	DEL	ACG	ACG	-			P-0066311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	131	417	0	ENST00000435504.4:c.4299_4301del	p.Val1434del	p.V1434del	ENST00000435504		1433	gtCGTt/gtt																																																																															
MGA	23269	MSKCC	GRCh37	15	42052720	42052720	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	72	337	0	ENST00000219905.7:c.7391T>A	p.Leu2464His	p.L2464H	ENST00000219905	NM_001164273.1	2464	cTt/cAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69129945	69129945	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748812788		P-0065693-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			377	115	461	0	ENST00000288368.4:c.4699C>T	p.Arg1567Trp	p.R1567W	ENST00000288368	NM_024870.2	1567	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0065693-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			313	98	343	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515297	31515297	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065693-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			398	43	451	0	ENST00000344624.3:c.1088C>G	p.Ala363Gly	p.A363G	ENST00000344624		363	gCt/gGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066111-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	63	328	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934574		P-0066118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	24	427	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121913482		P-0066118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	17	476	0	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883587	37883587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			926	136	385	0	ENST00000269571.5:c.3199G>A	p.Glu1067Lys	p.E1067K	ENST00000269571		1067	Gaa/Aaa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37876053	37876053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066118-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			760	301	324	0	ENST00000269571.5:c.1912G>A	p.Asp638Asn	p.D638N	ENST00000269571		638	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577157	7577157	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs1060501207		P-0066178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	86	479	0	ENST00000269305.4:c.783-2A>G		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0066178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	99	347	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969941	161969941	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs529808032		P-0066178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	60	453	0	ENST00000366898.1:c.1028C>T	p.Pro343Leu	p.P343L	ENST00000366898	NM_004562.2	343	cCg/cTg																																																																															
TRIP13	9319	MSKCC	GRCh37	5	895004	895004	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	69	393	0	ENST00000166345.3:c.195T>G	p.Phe65Leu	p.F65L	ENST00000166345	NM_004237.3	65	ttT/ttG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420211	49420211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	170	590	0	ENST00000301067.7:c.15538G>T	p.Val5180Leu	p.V5180L	ENST00000301067	NM_003482.3	5180	Gtg/Ttg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58725305	58725330	+	frameshift_variant	Frame_Shift_Del	DEL	ACCAGACACAAGTGTCCACACTCTTG	ACCAGACACAAGTGTCCACACTCTTG	-			P-0066178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	51	495	0	ENST00000305921.3:c.882_907del	p.Asp295SerfsTer11	p.D295Sfs*11	ENST00000305921	NM_003620.3	293	gaACCAGACACAAGTGTCCACACTCTTGac/gaac																																																																															
GNB1	2782	MSKCC	GRCh37	1	1735964	1735974	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAGGGGCAT	AGAAGGGGCAT	-			P-0066178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	95	513	0	ENST00000378609.4:c.314_324del	p.Tyr105TrpfsTer11	p.Y105Wfs*11	ENST00000378609	NM_002074.3	105	tATGCCCCTTCT/t																																																																															
TP53	7157	MSKCC	GRCh37	17	7578502	7578502	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	38	663	0	ENST00000269305.4:c.428T>C	p.Val143Ala	p.V143A	ENST00000269305	NM_001126112.2	143	gTg/gCg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127293	55127293	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	38	476	1	ENST00000257290.5:c.81A>T	p.Leu27Phe	p.L27F	ENST00000257290	NM_006206.4	27	ttA/ttT																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0066183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	48	621	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1218483	1218483	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs775595174		P-0066183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	43	536	0	ENST00000326873.7:c.358G>T	p.Glu120Ter	p.E120*	ENST00000326873	NM_000455.4	120	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0066183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	24	354	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ALK	238	MSKCC	GRCh37	2	30142977	30142978	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0066183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	33	683	0	ENST00000389048.3:c.548_549delinsTT	p.Gly183Val	p.G183V	ENST00000389048	NM_004304.4	183	gGG/gTT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93953258	93953259	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0066183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	15	371	0	ENST00000369303.4:c.2883-1_2883delinsTT		p.X961_splice	ENST00000369303	NM_004440.3	961																																																																																
VEGFA	7422	MSKCC	GRCh37	6	43738993	43738993	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	65	635	0	ENST00000523873.1:c.10C>A	p.Leu4Met	p.L4M	ENST00000523873		4	Ctg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066193-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	19	321	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974697	+	inframe_deletion	In_Frame_Del	DEL	GTA	GTA	-			P-0066193-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	15	524	0	ENST00000304494.5:c.130_132del	p.Tyr44del	p.Y44del	ENST00000304494	NM_000077.4	44	TAC/-																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217869	7217870	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0066193-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	27	473	0	ENST00000380728.2:c.141dup	p.Gln48ThrfsTer49	p.Q48Tfs*49	ENST00000380728		47	-/A																																																																															
RB1	5925	MSKCC	GRCh37	13	48954204	48954204	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066193-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	17	145	0	ENST00000267163.4:c.1405T>A	p.Ser469Thr	p.S469T	ENST00000267163	NM_000321.2	469	Tcc/Acc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs483352822		P-0066212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			40	11	437	0	ENST00000368323.3:c.270G>C	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atC																																																																															
TBX3	6926	MSKCC	GRCh37	12	115111981	115111981	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	12	483	0	ENST00000257566.3:c.1759C>A	p.Leu587Met	p.L587M	ENST00000257566	NM_016569.3	587	Ctg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			56	23	483	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25466803	25466803	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			71	13	472	0	ENST00000264709.3:c.1900A>T	p.Ile634Phe	p.I634F	ENST00000264709	NM_175629.2	634	Atc/Ttc																																																																															
ERG	2078	MSKCC	GRCh37	21	39795338	39795338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	14	351	0	ENST00000288319.7:c.382C>T	p.Pro128Ser	p.P128S	ENST00000288319	NM_182918.3	128	Cca/Tca																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030585	47030585	+	intron_variant	Intron	SNP	T	T	G	rs377667483		P-0066212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	10	412	0	ENST00000329236.7:c.201+1688T>G		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
MEN1	4221	MSKCC	GRCh37	11	64577530	64577530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			51	14	391	0	ENST00000337652.1:c.52G>T	p.Asp18Tyr	p.D18Y	ENST00000337652	NM_130803.2	18	Gac/Tac																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134051	41134051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			46	12	498	0	ENST00000379561.5:c.1577G>T	p.Gly526Val	p.G526V	ENST00000379561	NM_002015.3	526	gGa/gTa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120152	70120152	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			748	89	469	0	ENST00000245479.2:c.1154T>A	p.Leu385Gln	p.L385Q	ENST00000245479	NM_000346.3	385	cTg/cAg																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61306507	61306507	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			21	11	374	0	ENST00000341074.5:c.680T>A	p.Val227Glu	p.V227E	ENST00000341074	NM_002974.2	227	gTa/gAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211066	36211066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	12	475	0	ENST00000222270.7:c.817G>T	p.Gly273Cys	p.G273C	ENST00000222270	NM_014727.1	273	Ggt/Tgt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168725	32168725	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			55	10	422	0	ENST00000375023.3:c.4198C>G	p.Arg1400Gly	p.R1400G	ENST00000375023	NM_004557.3	1400	Cgc/Ggc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946385	2946385	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			60	11	434	0	ENST00000396946.4:c.3352G>T	p.Ala1118Ser	p.A1118S	ENST00000396946	NM_032415.4	1118	Gcc/Tcc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132816	152132816	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1043931017		P-0066212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	38	291	1	ENST00000262189.6:c.56C>T	p.Pro19Leu	p.P19L	ENST00000262189	NM_170606.2	19	cCc/cTc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981403	70981403	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	15	383	0	ENST00000276594.2:c.693C>G	p.Asp231Glu	p.D231E	ENST00000276594	NM_024504.3	231	gaC/gaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7576923	7576955	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAA	AGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAA	-			P-0066221-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	146	612	0	ENST00000269305.4:c.920-29_923del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
MGA	23269	MSKCC	GRCh37	15	42052717	42052734	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCTTACTCGAGTAAGTG	TTCTTACTCGAGTAAGTG	-			P-0066221-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	99	437	0	ENST00000219905.7:c.7392_7398+11del		p.X2464_splice	ENST00000219905	NM_001164273.1	2464																																																																																
BRCA1	672	MSKCC	GRCh37	17	41244034	41244034	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0066221-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	383	526	0	ENST00000357654.3:c.3514G>T	p.Glu1172Ter	p.E1172*	ENST00000357654	NM_007294.3	1172	Gaa/Taa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2189794	2189820	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTAGGTGGCTTGCCCCTGCCCAGAGG	GGTAGGTGGCTTGCCCCTGCCCAGAGG	-			P-0066221-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	86	591	0	ENST00000398665.3:c.264+2_264+28del		p.X88_splice	ENST00000398665	NM_032482.2	88																																																																																
INPP4B	8821	MSKCC	GRCh37	4	143130086	143130086	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066221-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	108	392	0	ENST00000262992.4:c.930G>T	p.Met310Ile	p.M310I	ENST00000262992	NM_001101669.1	310	atG/atT																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678541	88678541	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145157285		P-0066226-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	41	678	0	ENST00000360948.2:c.995C>T	p.Thr332Met	p.T332M	ENST00000360948	NM_001012338.2	332	aCg/aTg																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15822322	15822322	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0066226-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	36	106	0	ENST00000307771.7:c.399+2T>C		p.X133_splice	ENST00000307771	NM_005089.3	133																																																																																
FGF4	2249	MSKCC	GRCh37	11	69589782	69589782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066226-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	56	1017	0	ENST00000168712.1:c.71C>T	p.Ala24Val	p.A24V	ENST00000168712	NM_002007.2	24	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0066226-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	22	206	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BCL2	596	MSKCC	GRCh37	18	60795970	60795970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066226-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	36	556	0	ENST00000333681.4:c.608G>A	p.Gly203Asp	p.G203D	ENST00000333681		203	gGc/gAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500838	8500838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	100	759	0	ENST00000356435.5:c.2044G>A	p.Glu682Lys	p.E682K	ENST00000356435		682	Gaa/Aaa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347729	347729	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs754163738		P-0066227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	36	769	0	ENST00000262320.3:c.1777G>T	p.Ala593Ser	p.A593S	ENST00000262320	NM_003502.3	593	Gcc/Tcc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109813	115109813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	74	907	0	ENST00000257566.3:c.2065G>T	p.Gly689Cys	p.G689C	ENST00000257566	NM_016569.3	689	Ggc/Tgc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557489	21557489	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1170530046		P-0066227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	57	834	0	ENST00000382592.4:c.2356G>T	p.Gly786Cys	p.G786C	ENST00000382592	NM_014572.2	786	Ggc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879262	151879262	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs144021585		P-0066227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	37	682	0	ENST00000262189.6:c.5683A>G	p.Met1895Val	p.M1895V	ENST00000262189	NM_170606.2	1895	Atg/Gtg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17937674	17937674	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1265005806		P-0066227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	43	780	0	ENST00000458235.1:c.3253C>T	p.Arg1085Trp	p.R1085W	ENST00000458235	NM_000215.3	1085	Cgg/Tgg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564657	139564657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	32	815	0	ENST00000308874.7:c.446C>T	p.Pro149Leu	p.P149L	ENST00000308874		149	cCc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0066227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	72	492	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612867	228612867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			818	48	1173	0	ENST00000366696.1:c.160C>T	p.Arg54Cys	p.R54C	ENST00000366696	NM_003493.2	54	Cgc/Tgc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246490634	246490634	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	114	495	0	ENST00000388985.4:c.400A>T	p.Asn134Tyr	p.N134Y	ENST00000388985		134	Aac/Tac																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868320	56868320	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	37	747	0	ENST00000308159.5:c.1703G>C	p.Arg568Pro	p.R568P	ENST00000308159	NM_014669.4	568	cGc/cCc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760785	59760785	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0066227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	70	586	0	ENST00000259008.2:c.3622G>T	p.Asp1208Tyr	p.D1208Y	ENST00000259008	NM_032043.2	1208	Gac/Tac																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561069	9561069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	67	705	2	ENST00000353224.5:c.713G>A	p.Arg238Lys	p.R238K	ENST00000353224	NM_177990.2	238	aGa/aAa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31020719	31020719	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	22	635	0	ENST00000375687.4:c.1016A>T	p.Gln339Leu	p.Q339L	ENST00000375687	NM_015338.5	339	cAg/cTg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446745	29446745	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	34	879	0	ENST00000544604.2:c.2576G>T	p.Arg859Leu	p.R859L	ENST00000544604	NM_001206998.1	859	cGa/cTa																																																																															
EP300	2033	MSKCC	GRCh37	22	41573987	41573987	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	43	858	0	ENST00000263253.7:c.6272A>T	p.Lys2091Met	p.K2091M	ENST00000263253	NM_001429.3	2091	aAg/aTg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480458	89480458	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0066227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	45	640	0	ENST00000336596.2:c.2295C>G	p.Phe765Leu	p.F765L	ENST00000336596	NM_005233.5	765	ttC/ttG																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729986	41729986	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	82	880	0	ENST00000242208.4:c.543C>A	p.His181Gln	p.H181Q	ENST00000242208	NM_002192.2	181	caC/caA																																																																															
HGF	3082	MSKCC	GRCh37	7	81381468	81381468	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0066227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	48	605	0	ENST00000222390.5:c.593A>T	p.Tyr198Phe	p.Y198F	ENST00000222390	NM_000601.4	198	tAc/tTc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2123869	2123869	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0066227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	38	803	0	ENST00000349721.2:c.3913G>T	p.Gly1305Trp	p.G1305W	ENST00000349721	NM_003070.3	1305	Ggg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0062612-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			389	16	463	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717676	89717676	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062612-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			426	11	0	0	ENST00000371953.3:c.703del	p.Glu235LysfsTer21	p.E235Kfs*21	ENST00000371953	NM_000314.4	234	cGg/cg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249016	55249017	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCCACG			P-0062612-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			401	14	401	0	ENST00000275493.2:c.2315_2320dup	p.His773_Val774insAlaHis	p.H773_V774insAH	ENST00000275493	NM_005228.3	772	ccc/cCCCACGcc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023528	27023528	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062612-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			283	10	0	0	ENST00000324856.7:c.634T>C	p.Tyr212His	p.Y212H	ENST00000324856	NM_006015.4	212	Tac/Cac																																																																															
CDK8	1024	MSKCC	GRCh37	13	26974663	26974663	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062612-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			303	12	0	0	ENST00000381527.3:c.1007T>C	p.Leu336Ser	p.L336S	ENST00000381527	NM_001260.1	336	tTa/tCa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188317	32188317	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144492578		P-0065257-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1002	108	534	0	ENST00000375023.3:c.1024G>A	p.Val342Met	p.V342M	ENST00000375023	NM_004557.3	342	Gtg/Atg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602290	10602290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065257-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			403	172	419	1	ENST00000171111.5:c.1288G>T	p.Gly430Cys	p.G430C	ENST00000171111	NM_203500.1	430	Ggc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0065257-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			408	163	438	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243778409	243778409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065257-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			747	56	317	0	ENST00000263826.5:c.616C>T	p.Pro206Ser	p.P206S	ENST00000263826	NM_005465.4	206	Ccc/Tcc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843540	3843540	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065257-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			624	184	373	0	ENST00000262367.5:c.1063del	p.Gln355SerfsTer34	p.Q355Sfs*34	ENST00000262367	NM_004380.2	355	Cag/ag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0065988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	118	389	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185161420	185161420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	64	230	0	ENST00000265026.3:c.847C>T	p.Pro283Ser	p.P283S	ENST00000265026	NM_004721.4	283	Cct/Tct																																																																															
JUN	3725	MSKCC	GRCh37	1	59248629	59248629	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	36	380	0	ENST00000371222.2:c.114G>T	p.Met38Ile	p.M38I	ENST00000371222	NM_002228.3	38	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0065988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	107	334	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27058013	27058013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	66	390	0	ENST00000324856.7:c.1721C>T	p.Ser574Phe	p.S574F	ENST00000324856	NM_006015.4	574	tCc/tTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602430	10602430	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	162	453	0	ENST00000171111.5:c.1148C>A	p.Ser383Ter	p.S383*	ENST00000171111	NM_203500.1	383	tCg/tAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8524927	8524927	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0065988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	28	210	0	ENST00000356435.5:c.677G>C	p.Arg226Thr	p.R226T	ENST00000356435		226	aGa/aCa																																																																															
IRF4	3662	MSKCC	GRCh37	6	401513	401513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	98	417	0	ENST00000380956.4:c.835G>T	p.Gly279Ter	p.G279*	ENST00000380956	NM_001195286.1	279	Gga/Tga																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239525	31239525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	93	462	0	ENST00000376228.5:c.194C>T	p.Ala65Val	p.A65V	ENST00000376228	NM_002117.5	65	gCg/gTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883138	37883139	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0065988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	50	378	0	ENST00000269571.5:c.3046dup	p.Asp1016GlyfsTer6	p.D1016Gfs*6	ENST00000269571		1014	atg/atGg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53243900	53243900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	34	373	0	ENST00000375401.3:c.1093G>A	p.Val365Ile	p.V365I	ENST00000375401	NM_004187.3	365	Gtc/Atc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78857716	78857716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	43	447	0	ENST00000306801.3:c.1786G>A	p.Val596Met	p.V596M	ENST00000306801	NM_020761.2	596	Gtg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259473	55259473	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	76	300	0	ENST00000275493.2:c.2531T>A	p.Leu844Gln	p.L844Q	ENST00000275493	NM_005228.3	844	cTg/cAg																																																																															
RAD52	5893	MSKCC	GRCh37	12	1023606	1023606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	27	246	0	ENST00000358495.3:c.958G>A	p.Glu320Lys	p.E320K	ENST00000358495	NM_134424.2	320	Gaa/Aaa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530082	212530082	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	67	367	0	ENST00000342788.4:c.1837del	p.Glu613SerfsTer40	p.E613Sfs*40	ENST00000342788	NM_005235.2	613	Gag/ag																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62292756	62292756	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	A			P-0065988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	122	414	0	ENST00000482936.1:c.208C>A	p.Arg70Ser	p.R70S	ENST00000482936		70	Cgc/Agc																																																																															
ATRX	546	MSKCC	GRCh37	X	76938311	76938311	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	19	334	0	ENST00000373344.5:c.2437G>T	p.Glu813Ter	p.E813*	ENST00000373344	NM_000489.3	813	Gag/Tag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18544075	18544078	+	frameshift_variant	Frame_Shift_Del	DEL	GGTG	GGTG	TGT			P-0065988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	48	289	0	ENST00000266497.5:c.1892_1895delinsTGT	p.Gly631ValfsTer5	p.G631Vfs*5	ENST00000266497		631	gGGTGg/gTGTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519975		P-0065990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	57	497	0	ENST00000269305.4:c.403T>C	p.Cys135Arg	p.C135R	ENST00000269305	NM_001126112.2	135	Tgc/Cgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591806	48591806	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0065990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	31	443	0	ENST00000342988.3:c.969G>A	p.Trp323Ter	p.W323*	ENST00000342988	NM_005359.5	323	tgG/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0065990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	33	274	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438248	56438249	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTAA			P-0065990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	32	454	0	ENST00000407977.2:c.744_745insTTAC	p.Gln249LeufsTer11	p.Q249Lfs*11	ENST00000407977		248	-/TTAC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0065994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	54	254	1	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0065994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	158	389	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																															
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs137854575		P-0065994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	89	478	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482760	67482761	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0065994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	73	361	0	ENST00000327367.4:c.1166_1167del	p.Val389AspfsTer8	p.V389Dfs*8	ENST00000327367	NM_005902.3	388	acTGtg/actg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932171	39932171	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0065994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	172	281	1	ENST00000378444.4:c.2428C>T	p.Arg810Ter	p.R810*	ENST00000378444	NM_001123385.1	810	Cga/Tga																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979317	93979317	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs267601170		P-0065994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	127	431	0	ENST00000369303.4:c.1511A>T	p.Asn504Ile	p.N504I	ENST00000369303	NM_004440.3	504	aAt/aTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275240	41275240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	46	522	0	ENST00000349496.5:c.1406G>A	p.Arg469His	p.R469H	ENST00000349496	NM_001904.3	469	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0065994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	156	306	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67358653	67358659	+	frameshift_variant	Frame_Shift_Del	DEL	CCATCAC	CCATCAC	-			P-0065994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	68	472	0	ENST00000327367.4:c.162_168del	p.Ile55ArgfsTer59	p.I55Rfs*59	ENST00000327367	NM_005902.3	54	gCCATCACc/gc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187516852	187516852	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776855582		P-0065994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	99	429	0	ENST00000441802.2:c.13129G>A	p.Asp4377Asn	p.D4377N	ENST00000441802	NM_005245.3	4377	Gat/Aat																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500456	99500456	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	31	605	1	ENST00000268035.6:c.3889C>G	p.Pro1297Ala	p.P1297A	ENST00000268035	NM_000875.3	1297	Cca/Gca																																																																															
APC	324	MSKCC	GRCh37	5	112175573	112175573	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	116	568	0	ENST00000257430.4:c.4282G>T	p.Gly1428Ter	p.G1428*	ENST00000257430	NM_000038.5	1428	Gga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0065995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	171	574	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0065995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	121	326	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
EZH2	2146	MSKCC	GRCh37	7	148523665	148523665	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	51	374	0	ENST00000320356.2:c.788A>G	p.Asn263Ser	p.N263S	ENST00000320356	NM_004456.4	263	aAc/aGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023148	27023162	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCGGAGCCGGCA	GCGGCGGAGCCGGCA	CCGCCGCC			P-0065995-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	88	451	1	ENST00000324856.7:c.254_268delinsCCGCCGCC	p.Gly85AlafsTer14	p.G85Afs*14	ENST00000324856	NM_006015.4	85	gGCGGCGGAGCCGGCAgc/gCCGCCGCCgc																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs869320707		P-0066035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	167	410	0	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
CYLD	1540	MSKCC	GRCh37	16	50783674	50783674	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	153	347	0	ENST00000398568.2:c.65A>T	p.Tyr22Phe	p.Y22F	ENST00000398568	NM_001042412.1	22	tAc/tTc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs193920894		P-0066150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	48	533	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0066168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	196	810	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0066168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	184	1113	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096994	11096994	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	162	960	0	ENST00000344626.4:c.485T>C	p.Leu162Ser	p.L162S	ENST00000344626	NM_003072.3	162	tTg/tCg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859527	151859527	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0066168-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	200	1011	0	ENST00000262189.6:c.11135del	p.Pro3712LeufsTer7	p.P3712Lfs*7	ENST00000262189	NM_170606.2	3712	cCt/ct																																																																															
STK11	6794	MSKCC	GRCh37	19	1220594	1220595	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0048660-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			332	83	473	0	ENST00000326873.7:c.614_615del	p.Ala205GlyfsTer60	p.A205Gfs*60	ENST00000326873	NM_000455.4	204	ttCGcg/ttcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048660-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			364	107	257	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259184	36259184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048660-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			456	31	454	1	ENST00000300305.3:c.307C>T	p.Pro103Ser	p.P103S	ENST00000300305		103	Cct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0066051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	133	438	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0066051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	103	838	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0066051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	89	751	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748297	43748297	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0066051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	80	727	0	ENST00000382044.4:c.2509C>T	p.Gln837Ter	p.Q837*	ENST00000382044	NM_001141980.1	837	Cag/Tag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244313	41244313	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0066051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	86	564	0	ENST00000357654.3:c.3235A>C	p.Lys1079Gln	p.K1079Q	ENST00000357654	NM_007294.3	1079	Aaa/Caa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112434	115112435	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0066069-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	62	444	0	ENST00000257566.3:c.1305_1306del	p.Arg436ProfsTer2	p.R436Pfs*2	ENST00000257566	NM_016569.3	435	tcACgc/tcgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100944	41100944	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0066076-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	100	440	0	ENST00000373198.4:c.1412T>A	p.Met471Lys	p.M471K	ENST00000373198	NM_133170.3	471	aTg/aAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066076-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	118	317	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906919	32906919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0066076-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	82	496	0	ENST00000380152.3:c.1304G>A	p.Arg435Lys	p.R435K	ENST00000380152		435	aGa/aAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579449	7579450	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0066076-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	140	557	0	ENST00000269305.4:c.237_238del	p.Pro80TyrfsTer68	p.P80Yfs*68	ENST00000269305	NM_001126112.2	79	gcTCct/gcct																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971032	21971038	+	frameshift_variant	Frame_Shift_Del	DEL	GCATCGC	GCATCGC	-			P-0066085-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	198	593	0	ENST00000304494.5:c.320_326del	p.Arg107ProfsTer37	p.R107Pfs*37	ENST00000304494	NM_000077.4	107	cGCGATGCc/cc																																																																															
GNB1	2782	MSKCC	GRCh37	1	1747287	1747287	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0066085-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	259	524	0	ENST00000378609.4:c.111C>G	p.Ile37Met	p.I37M	ENST00000378609	NM_002074.3	37	atC/atG																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15821902	15821903	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0066085-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			72	207	234	0	ENST00000307771.7:c.295_296del	p.Arg99AlafsTer45	p.R99Afs*45	ENST00000307771	NM_005089.3	99	CGg/g																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061215	38061233	+	protein_altering_variant	In_Frame_Del	DEL	GCAGCCGTTCTCGAACATG	GCAGCCGTTCTCGAACATG	T			P-0066148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	103	591	0	ENST00000250448.2:c.756_774delinsA	p.Asn252_Cys258delinsLys	p.N252_C258delinsK	ENST00000250448	NM_004496.3	252	aaCATGTTCGAGAACGGCTGC/aaA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061600	38061654	+	protein_altering_variant	In_Frame_Del	DEL	TAGGGGCCCAGGCCATTCATGGAGGCCGCCTGCTGCGCACCCATGGCGCCCATGC	TAGGGGCCCAGGCCATTCATGGAGGCCGCCTGCTGCGCACCCATGGCGCCCATGC	G			P-0066148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	72	597	0	ENST00000250448.2:c.335_389delinsC	p.Gly112_Tyr130delinsAla	p.G112_Y130delinsA	ENST00000250448	NM_004496.3	112	gGCATGGGCGCCATGGGTGCGCAGCAGGCGGCCTCCATGAATGGCCTGGGCCCCTAc/gCc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs137853076		P-0026561-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			688	37	555	0	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0026561-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			655	49	606	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
NF1	4763	MSKCC	GRCh37	17	29683976	29683976	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0026561-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	27	423	0	ENST00000358273.4:c.7739-2A>G		p.X2580_splice	ENST00000358273	NM_001042492.2	2580																																																																																
NTRK3	4916	MSKCC	GRCh37	15	88472631	88472631	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026561-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			496	39	527	0	ENST00000360948.2:c.1924G>T	p.Gly642Ter	p.G642*	ENST00000360948	NM_001012338.2	642	Gga/Tga																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864517	57864517	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026561-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			694	52	606	0	ENST00000228682.2:c.1994C>A	p.Thr665Asn	p.T665N	ENST00000228682	NM_005269.2	665	aCc/aAc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156830868	156830868	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026561-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			585	51	631	0	ENST00000524377.1:c.142C>G	p.Leu48Val	p.L48V	ENST00000524377	NM_002529.3	48	Ctg/Gtg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52677334	52677345	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCTGCAGCCA	TGGCTGCAGCCA	CGGCG			P-0026561-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	37	478	1	ENST00000394830.3:c.914_925delinsCGCCG	p.Leu305SerfsTer4	p.L305Sfs*4	ENST00000394830	NM_018313.4	305	tTGGCTGCAGCCAga/tCGCCGga																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0036265-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			474	96	510	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67637153	67637153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036265-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			186	41	393	0	ENST00000272342.5:c.2764C>T	p.Pro922Ser	p.P922S	ENST00000272342	NM_019002.3	922	Ccc/Tcc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220443	1220443	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786202466		P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			326	828	749	0	ENST00000326873.7:c.536C>T	p.Pro179Leu	p.P179L	ENST00000326873	NM_000455.4	179	cCg/cTg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1185	369	685	7	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793010	33793010	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs974386262		P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			620	237	419	1	ENST00000498907.2:c.311G>A	p.Gly104Asp	p.G104D	ENST00000498907	NM_004364.3	104	gGc/gAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214871	36214871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1017	300	605	1	ENST00000222270.7:c.3302del	p.Pro1101LeufsTer81	p.P1101Lfs*81	ENST00000222270	NM_014727.1	1099	ggC/gg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076931	41076932	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			594	185	446	0	ENST00000373198.4:c.1488dup	p.Pro497AlafsTer3	p.P497Afs*3	ENST00000373198	NM_133170.3	496	-/G																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730075	41730075	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			643	600	562	0	ENST00000242208.4:c.454C>A	p.Arg152Ser	p.R152S	ENST00000242208	NM_002192.2	152	Cgt/Agt																																																																															
WT1	7490	MSKCC	GRCh37	11	32413565	32413565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			439	431	505	0	ENST00000332351.3:c.1385G>T	p.Arg462Leu	p.R462L	ENST00000332351	NM_024426.4	462	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			40	185	374	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			840	814	710	4	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106536133	106536133	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs923684599		P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			735	402	586	0	ENST00000369096.4:c.100A>G	p.Lys34Glu	p.K34E	ENST00000369096	NM_001198.3	34	Aag/Gag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600479	10600479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			385	984	661	0	ENST00000171111.5:c.1376G>T	p.Arg459Leu	p.R459L	ENST00000171111	NM_203500.1	459	cGa/cTa																																																																															
KIT	3815	MSKCC	GRCh37	4	55595651	55595651	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			85	45	351	0	ENST00000288135.5:c.2141+1del		p.C714fs	ENST00000288135	NM_000222.2	714	tGc/tc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599928	10599928	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs752854170		P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			400	919	564	0	ENST00000171111.5:c.1648A>G	p.Met550Val	p.M550V	ENST00000171111	NM_203500.1	550	Atg/Gtg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097625	11097625	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			696	425	595	1	ENST00000344626.4:c.810del	p.Met272CysfsTer31	p.M272Cfs*31	ENST00000344626	NM_003072.3	269	Ccc/cc																																																																															
RET	5979	MSKCC	GRCh37	10	43609003	43609003	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			752	379	762	0	ENST00000355710.3:c.1763del		p.X588_splice	ENST00000355710	NM_020975.4	588																																																																																
HRAS	3265	MSKCC	GRCh37	11	534232	534232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1039	290	553	0	ENST00000311189.7:c.91G>A	p.Glu31Lys	p.E31K	ENST00000311189		31	Gaa/Aaa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17120438	17120438	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			607	323	532	0	ENST00000285071.4:c.1121T>A	p.Val374Glu	p.V374E	ENST00000285071	NM_144997.5	374	gTg/gAg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713805	30713805	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	882	757	0	ENST00000359013.4:c.1205A>C	p.His402Pro	p.H402P	ENST00000359013	NM_001024847.2	402	cAc/cCc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067126	37067126	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T	rs267607815		P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			68	307	239	0	ENST00000231790.2:c.1039-2A>T		p.X347_splice	ENST00000231790	NM_000249.3	347																																																																																
KDR	3791	MSKCC	GRCh37	4	55958847	55958847	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	203	473	0	ENST00000263923.4:c.3006G>T	p.Leu1002Phe	p.L1002F	ENST00000263923	NM_002253.2	1002	ttG/ttT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230747	66230747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			66	52	427	0	ENST00000273854.3:c.2224G>T	p.Val742Leu	p.V742L	ENST00000273854	NM_004439.5	742	Gtg/Ttg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532801	187532801	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			519	315	544	0	ENST00000441802.2:c.9592T>G	p.Ser3198Ala	p.S3198A	ENST00000441802	NM_005245.3	3198	Tct/Gct																																																																															
MSH3	4437	MSKCC	GRCh37	5	79950785	79950785	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			474	252	375	0	ENST00000265081.6:c.237+2T>C		p.X79_splice	ENST00000265081	NM_002439.4	79																																																																																
RAD50	10111	MSKCC	GRCh37	5	131915007	131915007	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			76	63	339	0	ENST00000265335.6:c.366-2A>G		p.X122_splice	ENST00000265335		122																																																																																
FLT4	2324	MSKCC	GRCh37	5	180030365	180030366	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			798	355	674	1	ENST00000261937.6:c.3918_3919delinsTT	p.Ala1307Ser	p.A1307S	ENST00000261937	NM_182925.4	1306	gtGGct/gtTTct																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106515223	106515223	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			297	361	508	1	ENST00000359195.3:c.2366C>A	p.Pro789His	p.P789H	ENST00000359195	NM_002649.2	789	cCt/cAt																																																																															
POT1	25913	MSKCC	GRCh37	7	124532410	124532411	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-	rs1462186598		P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			65	58	333	0	ENST00000357628.3:c.33_34del	p.Leu14GlufsTer4	p.L14Efs*4	ENST00000357628	NM_015450.2	11	taTAca/taca																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152373161	152373161	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1047	347	482	0	ENST00000359321.1:c.4T>A	p.Cys2Ser	p.C2S	ENST00000359321	NM_005431.1	2	Tgt/Agt																																																																															
NBN	4683	MSKCC	GRCh37	8	90971032	90971032	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	389	446	0	ENST00000265433.3:c.1045G>C	p.Asp349His	p.D349H	ENST00000265433	NM_002485.4	349	Gat/Cat																																																																															
AGO2	27161	MSKCC	GRCh37	8	141569616	141569616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			852	298	563	0	ENST00000220592.5:c.668C>T	p.Ala223Val	p.A223V	ENST00000220592	NM_012154.3	223	gCg/gTg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248122	110248122	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			909	298	521	0	ENST00000374672.4:c.1350C>A	p.His450Gln	p.H450Q	ENST00000374672	NM_004235.4	450	caC/caA																																																																															
UPF1	5976	MSKCC	GRCh37	19	18943156	18943157	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	A			P-0062116-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			922	150	372	2	ENST00000262803.5:c.138_139delinsA	p.Gly49AlafsTer45	p.G49Afs*45	ENST00000262803	NM_002911.3	46	acGCcc/acAcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs863224683		P-0064712-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	316	467	0	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974763	21974763	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0064712-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			567	160	515	0	ENST00000304494.5:c.64del	p.Arg22GlyfsTer4	p.R22Gfs*4	ENST00000304494	NM_000077.4	22	Cgg/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0064712-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			247	162	277	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0065076-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			814	118	510	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0065076-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			585	171	246	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
GAB2	9846	MSKCC	GRCh37	11	77961420	77961420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065076-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			902	54	348	0	ENST00000361507.4:c.403G>A	p.Gly135Ser	p.G135S	ENST00000361507	NM_080491.2	135	Ggt/Agt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517937	187517937	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065076-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1062	165	493	0	ENST00000441802.2:c.12757C>G	p.Pro4253Ala	p.P4253A	ENST00000441802	NM_005245.3	4253	Cct/Gct																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31472174	31472174	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065076-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			753	222	351	0	ENST00000344624.3:c.2237G>T	p.Gly746Val	p.G746V	ENST00000344624		746	gGg/gTg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38959335	38959335	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0065076-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			782	82	301	0	ENST00000357387.3:c.2140A>T	p.Arg714Ter	p.R714*	ENST00000357387	NM_152756.3	714	Aga/Tga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637795	176637795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065076-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			897	117	410	0	ENST00000439151.2:c.2395G>T	p.Val799Phe	p.V799F	ENST00000439151	NM_022455.4	799	Gtt/Ttt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509514	106509514	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065076-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			911	146	430	0	ENST00000359195.3:c.1508C>A	p.Thr503Lys	p.T503K	ENST00000359195	NM_002649.2	503	aCg/aAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0065921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	120	525	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69002940	69002940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	90	362	0	ENST00000288368.4:c.2240G>A	p.Arg747Gln	p.R747Q	ENST00000288368	NM_024870.2	747	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0065921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	79	315	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577144	7577145	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTAGAT			P-0065921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	106	491	0	ENST00000269305.4:c.788_793dup	p.Leu264_Leu265insHisLeu	p.L264_L265insHL	ENST00000269305	NM_001126112.2	265	ctg/cATCTACtg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229686	5229686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065921-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	69	351	0	ENST00000357368.4:c.2165C>T	p.Ala722Val	p.A722V	ENST00000357368	NM_002850.3	722	gCg/gTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040965	47040965	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065975-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	88	475	0	ENST00000329236.7:c.1261G>T	p.Ala421Ser	p.A421S	ENST00000329236	NM_001204466.1	421	Gcc/Tcc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092815	27092831	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCCATATTCCATGGG	CCCCCATATTCCATGGG	-			P-0065975-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	212	336	0	ENST00000324856.7:c.2836_2852del	p.Pro946TrpfsTer55	p.P946Wfs*55	ENST00000324856	NM_006015.4	946	CCCCCATATTCCATGGGt/t																																																																															
BCL10	8915	MSKCC	GRCh37	1	85736460	85736487	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTACTTGATGTTCGACAAGAAATTTC	TTCTACTTGATGTTCGACAAGAAATTTC	-			P-0065975-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	237	383	0	ENST00000370580.1:c.160_187del	p.Glu54LysfsTer7	p.E54Kfs*7	ENST00000370580	NM_003921.4	54	GAAATTTCTTGTCGAACATCAAGTAGAAaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577562	7577563	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0065975-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	193	324	0	ENST00000269305.4:c.718_719del	p.Ser240PhefsTer23	p.S240Ffs*23	ENST00000269305	NM_001126112.2	240	AGt/t																																																																															
BRCA1	672	MSKCC	GRCh37	17	41247883	41247883	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065975-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	134	292	0	ENST00000357654.3:c.650G>C	p.Ser217Thr	p.S217T	ENST00000357654	NM_007294.3	217	aGt/aCt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52676062	52676062	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0065975-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	219	257	0	ENST00000394830.3:c.996-1G>A		p.X332_splice	ENST00000394830	NM_018313.4	332																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0066041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	116	591	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0066041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	238	620	4	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0066041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	410	692	5	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0066041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	226	647	1	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852217		P-0066041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	452	774	2	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	245	373	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131927066	131927066	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762188153		P-0066041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	275	554	5	ENST00000265335.6:c.1603C>T	p.Arg535Cys	p.R535C	ENST00000265335		535	Cgt/Tgt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710661	114710661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	264	622	4	ENST00000543371.1:c.146T>C	p.Val49Ala	p.V49A	ENST00000543371	NM_001198531.1	49	gTc/gCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0066042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	207	599	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
EP300	2033	MSKCC	GRCh37	22	41572495	41572495	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0066042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	105	757	0	ENST00000263253.7:c.5024A>G	p.His1675Arg	p.H1675R	ENST00000263253	NM_001429.3	1675	cAc/cGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	46	318	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0066049-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	24	379	0	ENST00000269305.4:c.782+1del		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0066052-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	119	502	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39535272	39535272	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0066052-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	64	558	0	ENST00000262039.4:c.17del	p.Lys6SerfsTer18	p.K6Sfs*18	ENST00000262039	NM_002647.2	6	Aag/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577095	7577095	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519984		P-0066053-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	139	612	0	ENST00000269305.4:c.843C>G	p.Asp281Glu	p.D281E	ENST00000269305	NM_001126112.2	281	gaC/gaG																																																																															
STK11	6794	MSKCC	GRCh37	19	1220579	1220579	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0066053-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	131	671	0	ENST00000326873.7:c.598-1G>T		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0066053-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	75	355	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150923452	150923452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0066053-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	88	546	0	ENST00000271640.5:c.2099C>T	p.Thr700Ile	p.T700I	ENST00000271640	NM_001145415.1	700	aCc/aTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0058861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			40	14	218	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0058861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			4	19	310	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0058861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			8	19	165	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272207	15272207	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1051094199		P-0058861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			18	32	329	0	ENST00000263388.2:c.6232C>T	p.Arg2078Trp	p.R2078W	ENST00000263388	NM_000435.2	2078	Cgg/Tgg																																																																															
MET	4233	MSKCC	GRCh37	7	116398625	116398625	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45587940		P-0058861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			31	29	277	0	ENST00000397752.3:c.2215C>T	p.Arg739Cys	p.R739C	ENST00000397752	NM_000245.2	739	Cgt/Tgt																																																																															
MGA	23269	MSKCC	GRCh37	15	42042420	42042421	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0058861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			28	26	352	0	ENST00000219905.7:c.6616_6617del	p.Lys2206AspfsTer17	p.K2206Dfs*17	ENST00000219905	NM_001164273.1	2205	acAAag/acag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0059937-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	47	435	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059937-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	31	218	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246614	46246614	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059937-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	36	322	0	ENST00000334344.6:c.4708A>G	p.Ile1570Val	p.I1570V	ENST00000334344	NM_152641.2	1570	Ata/Gta																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575174	48575174	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059937-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	37	267	0	ENST00000342988.3:c.368del	p.Cys123LeufsTer6	p.C123Lfs*6	ENST00000342988	NM_005359.5	123	tGt/tt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145704	11145704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059937-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	40	417	0	ENST00000344626.4:c.4066C>T	p.Arg1356Trp	p.R1356W	ENST00000344626	NM_003072.3	1356	Cgg/Tgg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44945150	44945150	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0059937-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	38	298	0	ENST00000377967.4:c.3474del	p.Asn1158LysfsTer20	p.N1158Kfs*20	ENST00000377967	NM_021140.2	1158	aaT/aa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T	rs730881673		P-0061080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			408	172	525	0	ENST00000304494.5:c.131dup	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0061080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	197	629	0	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578418	7578418	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			193	247	588	0	ENST00000269305.4:c.512A>G	p.Glu171Gly	p.E171G	ENST00000269305	NM_001126112.2	171	gAg/gGg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453468	40453468	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866679330		P-0061080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			420	196	487	0	ENST00000345506.4:c.1165C>T	p.Arg389Cys	p.R389C	ENST00000345506	NM_003152.3	389	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584540	48584541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0061080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			209	222	472	0	ENST00000342988.3:c.714dup	p.Gln239AlafsTer25	p.Q239Afs*25	ENST00000342988	NM_005359.5	238	ttg/ttGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0061080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			172	244	287	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933335	39933335	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0061080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			440	231	588	0	ENST00000378444.4:c.1264A>T	p.Ser422Cys	p.S422C	ENST00000378444	NM_001123385.1	422	Agc/Tgc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171638	36171639	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0061080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			233	229	471	0	ENST00000300305.3:c.926dup	p.Met310HisfsTer290	p.M310Hfs*290	ENST00000300305		309	ggc/ggGc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971107	21971108	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0061080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	198	517	0	ENST00000304494.5:c.250_251delinsTT	p.Asp84Phe	p.D84F	ENST00000304494	NM_000077.4	84	GAc/TTc																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346066	152346066	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0061080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	154	521	0	ENST00000359321.1:c.504A>C	p.Leu168Phe	p.L168F	ENST00000359321	NM_005431.1	168	ttA/ttC																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589663	67589663	+	splice_donor_variant	Splice_Site	SNP	G	G	C	rs587777709		P-0061518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	12	302	0	ENST00000274335.5:c.1425+1G>C		p.X475_splice	ENST00000274335		475																																																																																
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G	rs587782272		P-0061518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	19	282	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
ARAF	369	MSKCC	GRCh37	X	47426121	47426121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064711-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			655	79	380	0	ENST00000377045.4:c.641C>A	p.Ser214Tyr	p.S214Y	ENST00000377045	NM_001654.4	214	tCc/tAc																																																																															
CDK6	1021	MSKCC	GRCh37	7	92300830	92300830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064711-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			584	39	247	0	ENST00000265734.4:c.557G>A	p.Arg186Lys	p.R186K	ENST00000265734	NM_001259.6	186	aGa/aAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0064711-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			463	138	175	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5055766	5055766	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064711-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			416	63	252	0	ENST00000381652.3:c.1034A>G	p.His345Arg	p.H345R	ENST00000381652	NM_004972.3	345	cAt/cGt																																																																															
ATRX	546	MSKCC	GRCh37	X	76953101	76953101	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064711-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			377	50	172	0	ENST00000373344.5:c.212C>A	p.Ser71Tyr	p.S71Y	ENST00000373344	NM_000489.3	71	tCc/tAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11288973	11288973	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0064711-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			644	50	285	0	ENST00000361445.4:c.2782G>C	p.Asp928His	p.D928H	ENST00000361445	NM_004958.3	928	Gac/Cac																																																																															
MGA	23269	MSKCC	GRCh37	15	42021450	42021451	+	frameshift_variant	Frame_Shift_Ins	INS	AG	AG	GAT			P-0064711-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			570	86	288	0	ENST00000219905.7:c.3746_3747delinsGAT	p.Glu1249GlyfsTer2	p.E1249Gfs*2	ENST00000219905	NM_001164273.1	1249	gAG/gGAT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0065575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	16	146	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0065575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	51	472	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129169	64129169	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746466314		P-0065575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	14	439	0	ENST00000334205.4:c.707C>T	p.Ser236Leu	p.S236L	ENST00000334205	NM_003942.2	236	tCg/tTg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175916374	175916374	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0065575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	17	203	0	ENST00000367669.3:c.2135A>G	p.Glu712Gly	p.E712G	ENST00000367669	NM_022457.5	712	gAg/gGg																																																																															
APLNR	187	MSKCC	GRCh37	11	57004016	57004016	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	A			P-0065575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	55	453	0	ENST00000257254.3:c.463G>T	p.Val155Leu	p.V155L	ENST00000257254		155	Gtg/Ttg																																																																															
ATM	472	MSKCC	GRCh37	11	108201002	108201002	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	16	322	0	ENST00000278616.4:c.7369G>T	p.Glu2457Ter	p.E2457*	ENST00000278616	NM_000051.3	2457	Gag/Tag																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001895	29001895	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	46	275	0	ENST00000282397.4:c.1270G>T	p.Val424Phe	p.V424F	ENST00000282397	NM_002019.4	424	Gtc/Ttc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954250	32954250	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	34	329	0	ENST00000380152.3:c.9224T>A	p.Ile3075Lys	p.I3075K	ENST00000380152		3075	aTa/aAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992118	72992118	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	26	463	0	ENST00000268489.5:c.1927C>G	p.Pro643Ala	p.P643A	ENST00000268489	NM_006885.3	643	Ccc/Gcc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943351	17943351	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	26	300	0	ENST00000458235.1:c.2657A>G	p.Tyr886Cys	p.Y886C	ENST00000458235	NM_000215.3	886	tAt/tGt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25978890	25978919	+	inframe_deletion	In_Frame_Del	DEL	CTGAGAGTCTTTCCTTCCAGCCTTGGGCTG	CTGAGAGTCTTTCCTTCCAGCCTTGGGCTG	-			P-0065575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	16	239	0	ENST00000435504.4:c.1004_1033del	p.Ala335_Ser344del	p.A335_S344del	ENST00000435504		335	gCAGCCCAAGGCTGGAAGGAAAGACTCTCAGaa/gaa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99180080	99180080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	23	342	0	ENST00000074304.5:c.2023G>A	p.Asp675Asn	p.D675N	ENST00000074304	NM_001134224.1	675	Gac/Aac																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130426	29130426	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs750596499		P-0065575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	50	356	0	ENST00000328354.6:c.284G>C	p.Arg95Pro	p.R95P	ENST00000328354	NM_007194.3	95	cGa/cCa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147582	47147582	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	27	423	1	ENST00000409792.3:c.4744G>T	p.Glu1582Ter	p.E1582*	ENST00000409792	NM_014159.6	1582	Gag/Tag																																																																															
GATA2	2624	MSKCC	GRCh37	3	128199891	128199891	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	21	423	0	ENST00000341105.2:c.1414C>G	p.Pro472Ala	p.P472A	ENST00000341105	NM_032638.4	472	Ccg/Gcg																																																																															
ATR	545	MSKCC	GRCh37	3	142261538	142261538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	28	274	0	ENST00000350721.4:c.3419G>T	p.Ser1140Ile	p.S1140I	ENST00000350721	NM_001184.3	1140	aGc/aTc																																																																															
GAB1	2549	MSKCC	GRCh37	4	144361236	144361236	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0065575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	45	334	0	ENST00000262994.4:c.1286T>G	p.Val429Gly	p.V429G	ENST00000262994	NM_002039.3	429	gTc/gGc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295706	1295706	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0065575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	51	489	0				ENST00000310581	NM_198253.2																																																																																	
RICTOR	253260	MSKCC	GRCh37	5	38953601	38953601	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	48	265	0	ENST00000357387.3:c.2752G>T	p.Glu918Ter	p.E918*	ENST00000357387	NM_152756.3	918	Gaa/Taa																																																																															
HGF	3082	MSKCC	GRCh37	7	81335606	81335606	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	59	273	0	ENST00000222390.5:c.1754C>A	p.Ala585Asp	p.A585D	ENST00000222390	NM_000601.4	585	gCc/gAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874692	151874692	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	22	428	0	ENST00000262189.6:c.7846C>A	p.Pro2616Thr	p.P2616T	ENST00000262189	NM_170606.2	2616	Cct/Act																																																																															
ABL1	25	MSKCC	GRCh37	9	133759407	133759407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	35	352	0	ENST00000318560.5:c.1730G>A	p.Arg577Gln	p.R577Q	ENST00000318560	NM_005157.4	577	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0065904-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	154	538	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0065935-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	72	402	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519968		P-0065935-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	109	399	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0065940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	9	422	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80412470	80412470	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28764015		P-0065940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	79	373	0	ENST00000286548.4:c.571G>A	p.Glu191Lys	p.E191K	ENST00000286548	NM_002072.3	191	Gaa/Aaa																																																																															
MED12	9968	MSKCC	GRCh37	X	70338641	70338641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	28	147	0	ENST00000374080.3:c.37C>T	p.Pro13Ser	p.P13S	ENST00000374080		13	Ccc/Tcc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15967483	15967483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065940-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	85	332	0	ENST00000268712.3:c.5120C>T	p.Ala1707Val	p.A1707V	ENST00000268712	NM_006311.3	1707	gCa/gTa																																																																															
WT1	7490	MSKCC	GRCh37	11	32456753	32456753	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1212035248		P-0065978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	60	374	0	ENST00000332351.3:c.139G>A	p.Glu47Lys	p.E47K	ENST00000332351	NM_024426.4	47	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0065978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	446	238	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207088	1207089	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0065978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	78	366	0	ENST00000326873.7:c.178dup	p.Tyr60LeufsTer103	p.Y60Lfs*103	ENST00000326873	NM_000455.4	59	tct/tcTt																																																																															
NF2	4771	MSKCC	GRCh37	22	30035145	30035145	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	73	315	0	ENST00000338641.4:c.307G>T	p.Glu103Ter	p.E103*	ENST00000338641	NM_000268.3	103	Gag/Tag																																																																															
POT1	25913	MSKCC	GRCh37	7	124499166	124499166	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0065978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	60	210	0	ENST00000357628.3:c.547G>T	p.Val183Leu	p.V183L	ENST00000357628	NM_015450.2	183	Gta/Tta																																																																															
HGF	3082	MSKCC	GRCh37	7	81388019	81388019	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs750225776		P-0065978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	41	188	0	ENST00000222390.5:c.356A>G	p.Tyr119Cys	p.Y119C	ENST00000222390	NM_000601.4	119	tAt/tGt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31369157	31369164	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGGCCGAA	AGGCCGAA	G			P-0065978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	63	300	0	ENST00000328111.2:c.143-2_148delinsG		p.X48_splice	ENST00000328111	NM_006892.3	48																																																																																
TP53	7157	MSKCC	GRCh37	17	7579346	7579348	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs764486868		P-0065979-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	249	471	0	ENST00000269305.4:c.339_341del	p.Phe113del	p.F113del	ENST00000269305	NM_001126112.2	113	ttCTTg/ttg																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020827	26020827	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065979-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	143	556	0	ENST00000357647.3:c.110A>T	p.Lys37Ile	p.K37I	ENST00000357647	NM_003529.2	37	aAa/aTa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736277	243736277	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs764214500		P-0066019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	203	319	0	ENST00000263826.5:c.770C>G	p.Ser257Cys	p.S257C	ENST00000263826	NM_005465.4	257	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0066019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	181	371	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682187	37682187	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0066019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	25	412	0	ENST00000447079.4:c.3378A>C	p.Gln1126His	p.Q1126H	ENST00000447079	NM_015083.1	1126	caA/caC																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437618	52437618	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs765929006		P-0066019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	18	482	0	ENST00000460680.1:c.1543A>C	p.Asn515His	p.N515H	ENST00000460680	NM_004656.3	515	Aac/Cac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420346	49420346	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0066019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	21	428	0	ENST00000301067.7:c.15403A>G	p.Met5135Val	p.M5135V	ENST00000301067	NM_003482.3	5135	Atg/Gtg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149509367	149509367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1232469262		P-0066019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	64	482	1	ENST00000261799.4:c.1532G>A	p.Arg511His	p.R511H	ENST00000261799	NM_002609.3	511	cGc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242491	+	protein_altering_variant	In_Frame_Del	DEL	TAAGAGAAGCAACATCTCCGAA	TAAGAGAAGCAACATCTCCGAA	CAAG			P-0066019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	171	345	1	ENST00000275493.2:c.2240_2261delinsCAAG	p.Leu747_Lys754delinsSerArg	p.L747_K754delinsSR	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCCGAAa/tCAAGa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0046823-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			4595	178	555	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0046823-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			205	56	239	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108203553	108203553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046823-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			486	35	463	0	ENST00000278616.4:c.7853G>A	p.Arg2618Lys	p.R2618K	ENST00000278616	NM_000051.3	2618	aGa/aAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876659802		P-0046823-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			202	415	520	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242484	55242507	+	inframe_deletion	In_Frame_Del	DEL	TCTCCGAAAGCCAACAAGGAAATC	TCTCCGAAAGCCAACAAGGAAATC	-	rs121913463		P-0046823-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			428	3075	419	0	ENST00000275493.2:c.2254_2277del	p.Ser752_Ile759del	p.S752_I759del	ENST00000275493	NM_005228.3	752	TCTCCGAAAGCCAACAAGGAAATC/-																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267361	198267361	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs754688962		P-0046823-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			485	133	550	0	ENST00000335508.6:c.1996A>G	p.Lys666Glu	p.K666E	ENST00000335508	NM_012433.2	666	Aag/Gag																																																																															
ABL1	25	MSKCC	GRCh37	9	133761003	133761003	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1021481710		P-0046823-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			262	99	520	0	ENST00000318560.5:c.3326C>T	p.Ala1109Val	p.A1109V	ENST00000318560	NM_005157.4	1109	gCg/gTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539390	187539390	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046823-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			348	47	581	0	ENST00000441802.2:c.8350C>G	p.Gln2784Glu	p.Q2784E	ENST00000441802	NM_005245.3	2784	Caa/Gaa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115252190	115252190	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0046823-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			235	75	396	0	ENST00000369535.4:c.450G>C	p.Gln150His	p.Q150H	ENST00000369535	NM_002524.4	150	caG/caC																																																																															
ATM	472	MSKCC	GRCh37	11	108203529	108203529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046823-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			433	33	431	0	ENST00000278616.4:c.7829G>A	p.Arg2610Lys	p.R2610K	ENST00000278616	NM_000051.3	2610	aGa/aAa																																																																															
ATM	472	MSKCC	GRCh37	11	108204687	108204687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046823-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			390	34	349	0	ENST00000278616.4:c.8002G>A	p.Glu2668Lys	p.E2668K	ENST00000278616	NM_000051.3	2668	Gaa/Aaa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118392030	118392030	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046823-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			462	70	518	0	ENST00000534358.1:c.11541C>G	p.Phe3847Leu	p.F3847L	ENST00000534358	NM_005933.3	3847	ttC/ttG																																																																															
BLM	641	MSKCC	GRCh37	15	91346858	91346858	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046823-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			250	79	459	0	ENST00000355112.3:c.3466G>C	p.Asp1156His	p.D1156H	ENST00000355112	NM_000057.2	1156	Gat/Cat																																																																															
NF1	4763	MSKCC	GRCh37	17	29670115	29670115	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046823-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			412	31	424	0	ENST00000358273.4:c.7151C>G	p.Ser2384Cys	p.S2384C	ENST00000358273	NM_001042492.2	2384	tCt/tGt																																																																															
TERT	7015	MSKCC	GRCh37	5	1266609	1266609	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046823-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			609	59	523	0	ENST00000310581.5:c.2624C>G	p.Pro875Arg	p.P875R	ENST00000310581	NM_198253.2	875	cCt/cGt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38946579	38946579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046823-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			319	82	331	0	ENST00000357387.3:c.4390G>A	p.Asp1464Asn	p.D1464N	ENST00000357387	NM_152756.3	1464	Gat/Aat																																																																															
MDM4	4194	MSKCC	GRCh37	1	204495484	204495489	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCAGGT	TCAGGT	A			P-0046823-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			425	68	416	0	ENST00000367182.3:c.79-4_80delinsA		p.X27_splice	ENST00000367182	NM_001278516.1	27																																																																																
SPOP	8405	MSKCC	GRCh37	17	47696449	47696449	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	65	459	0	ENST00000347630.2:c.374T>G	p.Phe125Cys	p.F125C	ENST00000347630	NM_001007230.1	125	tTt/tGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432669	49432669	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1190017036		P-0065910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	58	551	0	ENST00000301067.7:c.8470A>G	p.Thr2824Ala	p.T2824A	ENST00000301067	NM_003482.3	2824	Aca/Gca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907402	32907430	+	frameshift_variant	Frame_Shift_Del	DEL	ATGAAACATCTTATAAAGGAAAAAAAATA	ATGAAACATCTTATAAAGGAAAAAAAATA	-			P-0065910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	56	426	0	ENST00000380152.3:c.1787_1815del	p.Asp596AlafsTer10	p.D596Afs*10	ENST00000380152		596	gATGAAACATCTTATAAAGGAAAAAAAATA/g																																																																															
NBN	4683	MSKCC	GRCh37	8	90955539	90955539	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	88	332	0	ENST00000265433.3:c.2126T>C	p.Ile709Thr	p.I709T	ENST00000265433	NM_002485.4	709	aTa/aCa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120478175	120478175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	40	474	0	ENST00000256646.2:c.3575A>G	p.Gln1192Arg	p.Q1192R	ENST00000256646	NM_024408.3	1192	cAg/cGg																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735551	204735558	+	frameshift_variant	Frame_Shift_Del	DEL	GGACTGAG	GGACTGAG	-			P-0065910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	46	463	0	ENST00000302823.3:c.354_361del	p.Leu119HisfsTer32	p.L119Hfs*32	ENST00000302823	NM_005214.4	118	GGACTGAGg/g																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198268434	198268434	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	33	348	0	ENST00000335508.6:c.1594T>C	p.Phe532Leu	p.F532L	ENST00000335508	NM_012433.2	532	Ttt/Ctt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225379350	225379350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059173-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	105	384	0	ENST00000264414.4:c.518G>A	p.Arg173Gln	p.R173Q	ENST00000264414	NM_003590.4	173	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577579	7577579	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0059173-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	328	458	0	ENST00000269305.4:c.702C>G	p.Tyr234Ter	p.Y234*	ENST00000269305	NM_001126112.2	234	taC/taG																																																																															
ROS1	6098	MSKCC	GRCh37	6	117631362	117631362	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150262256		P-0059173-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	166	407	0	ENST00000368508.3:c.6316G>A	p.Ala2106Thr	p.A2106T	ENST00000368508	NM_002944.2	2106	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs786201057		P-0064074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	142	355	0	ENST00000269305.4:c.374C>A	p.Thr125Lys	p.T125K	ENST00000269305	NM_001126112.2	125	aCg/aAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	87	220	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIM1	5292	MSKCC	GRCh37	6	37139151	37139151	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064074-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			708	79	436	0	ENST00000373509.5:c.491T>A	p.Leu164His	p.L164H	ENST00000373509	NM_002648.3	164	cTc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0064501-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			67	11	588	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064501-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			81	16	372	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577184	64577184	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064501-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			110	21	526	1	ENST00000337652.1:c.398A>G	p.Tyr133Cys	p.Y133C	ENST00000337652	NM_130803.2	133	tAc/tGc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440928	56440928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064501-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			77	20	531	0	ENST00000407977.2:c.409G>T	p.Val137Phe	p.V137F	ENST00000407977		137	Gtc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0064546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	128	602	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0064546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	292	574	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39305274	39305274	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	52	517	0	ENST00000373001.3:c.1151C>G	p.Ser384Cys	p.S384C	ENST00000373001	NM_022157.3	384	tCc/tGc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25994398	25995197	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGACGACGATACTAGGGAAAAAAAAGTGACAATAAAAGATTTTTGTTAACAGAGATACCAAGCACCATTCCTTCCCCAATCATATGCTGCTACCTGGAGTAAGAACTATGACCAAACACTTTTGGGAACGATGTACTTTTTGGAGTTTTACTGCAAACAGCCTCCCTTTTCAGTTTTTTTCCTCAGAAAGTTCTAATGAAGGATGATAGGATAGGGAAGGGATGAGTGTTAGTATTCATTACTTTTCATTTATTACTTTTTCAATAGAATTGACTGAAGAATGACTCATCAAATCAGATAAAACTTAGGAAAGATTCTAGGGCCTTTAAGACAGTATCTATGGTCTCACAGTAAATCTAATGACAACACGATACAGTGGAAGGGCCTTGGGTTGGCAGTTTAAAATAAAGACATTAAGGCCATTCGACCTCAAAACTCTACCACAGTTTTAATCCTTACATTCCTTCATCCTTTAAATCAACAGTTACAGGCTTACCAACGTGAGAGGGCATTTTAAGATGTCTCTAATGGAAGCAATTTGAATTTGCATAAGATGTAACCACTCTCTACTTCATCACTAGCTGTTTTATATTGCCTGGCAGAGTTTAGCCAGATCTGAGTGGGTCTTATGCGAACAAGGGTTCTTTAAGAATCTATACCTCTTAAACAGCAAGTAGATATTTATGTTCTATAAAATTAAACAATATGTGAGTAGTGTTTACGATAAATACAGAAATTGCTGATTCAGTACCCTTATTAAAAAAAAATTATAATCACTACTGCTAGTGATGACTCTTGA	AGGACGACGATACTAGGGAAAAAAAAGTGACAATAAAAGATTTTTGTTAACAGAGATACCAAGCACCATTCCTTCCCCAATCATATGCTGCTACCTGGAGTAAGAACTATGACCAAACACTTTTGGGAACGATGTACTTTTTGGAGTTTTACTGCAAACAGCCTCCCTTTTCAGTTTTTTTCCTCAGAAAGTTCTAATGAAGGATGATAGGATAGGGAAGGGATGAGTGTTAGTATTCATTACTTTTCATTTATTACTTTTTCAATAGAATTGACTGAAGAATGACTCATCAAATCAGATAAAACTTAGGAAAGATTCTAGGGCCTTTAAGACAGTATCTATGGTCTCACAGTAAATCTAATGACAACACGATACAGTGGAAGGGCCTTGGGTTGGCAGTTTAAAATAAAGACATTAAGGCCATTCGACCTCAAAACTCTACCACAGTTTTAATCCTTACATTCCTTCATCCTTTAAATCAACAGTTACAGGCTTACCAACGTGAGAGGGCATTTTAAGATGTCTCTAATGGAAGCAATTTGAATTTGCATAAGATGTAACCACTCTCTACTTCATCACTAGCTGTTTTATATTGCCTGGCAGAGTTTAGCCAGATCTGAGTGGGTCTTATGCGAACAAGGGTTCTTTAAGAATCTATACCTCTTAAACAGCAAGTAGATATTTATGTTCTATAAAATTAAACAATATGTGAGTAGTGTTTACGATAAATACAGAAATTGCTGATTCAGTACCCTTATTAAAAAAAAATTATAATCACTACTGCTAGTGATGACTCTTGA	-			P-0064546-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	79	469	0	ENST00000435504.4:c.404-788_415del		p.X135_splice	ENST00000435504		135																																																																																
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934571		P-0064832-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			107	168	432	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
ATM	472	MSKCC	GRCh37	11	108186812	108186812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064832-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	124	483	0	ENST00000278616.4:c.6170C>T	p.Ser2057Leu	p.S2057L	ENST00000278616	NM_000051.3	2057	tCa/tTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0064832-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	196	328	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572237	64572237	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064832-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	109	713	0	ENST00000337652.1:c.1417G>T	p.Glu473Ter	p.E473*	ENST00000337652	NM_130803.2	473	Gag/Tag																																																																															
PGR	5241	MSKCC	GRCh37	11	100933420	100933420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064832-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	110	397	0	ENST00000325455.5:c.1970C>A	p.Pro657Gln	p.P657Q	ENST00000325455	NM_001202474.3	657	cCa/cAa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	464354	464354	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064832-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	106	416	0	ENST00000399788.2:c.840A>T	p.Arg280Ser	p.R280S	ENST00000399788	NM_001042603.1	280	agA/agT																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929084	32929084	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0064832-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	34	387	0	ENST00000380152.3:c.7094A>C	p.His2365Pro	p.H2365P	ENST00000380152		2365	cAt/cCt																																																																															
MAX	4149	MSKCC	GRCh37	14	65544742	65544742	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064832-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	95	403	0	ENST00000358664.4:c.184C>T	p.Gln62Ter	p.Q62*	ENST00000358664	NM_002382.4	62	Caa/Taa																																																																															
KIT	3815	MSKCC	GRCh37	4	55602776	55602776	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0064832-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	104	341	0	ENST00000288135.5:c.2596+1G>T		p.X866_splice	ENST00000288135	NM_000222.2	866																																																																																
KDR	3791	MSKCC	GRCh37	4	55973942	55973943	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0064832-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	115	481	0	ENST00000263923.4:c.1373_1374delinsAT	p.Trp458Tyr	p.W458Y	ENST00000263923	NM_002253.2	458	tGG/tAT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319909	8319909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064832-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	93	439	0	ENST00000356435.5:c.5592G>T	p.Met1864Ile	p.M1864I	ENST00000356435		1864	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578520	7578520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	540	594	1	ENST00000269305.4:c.410T>A	p.Leu137Gln	p.L137Q	ENST00000269305	NM_001126112.2	137	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579419	7579420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0065624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	67	552	0	ENST00000269305.4:c.267dup	p.Ser90LeufsTer59	p.S90Lfs*59	ENST00000269305	NM_001126112.2	89	-/C																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0065624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	67	498	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0065624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	69	287	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERG	2078	MSKCC	GRCh37	21	39755665	39755665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	474	456	0	ENST00000288319.7:c.1100G>A	p.Arg367His	p.R367H	ENST00000288319	NM_182918.3	367	cGc/cAc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119642311	119642311	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0065624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	60	258	0	ENST00000316626.5:c.386A>C	p.Asn129Thr	p.N129T	ENST00000316626		129	aAt/aCt																																																																															
APC	324	MSKCC	GRCh37	5	112179749	112179749	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	32	471	0	ENST00000257430.4:c.8458A>T	p.Thr2820Ser	p.T2820S	ENST00000257430	NM_000038.5	2820	Act/Tct																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27840009	27840009	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	40	606	0	ENST00000328488.2:c.85A>G	p.Ser29Gly	p.S29G	ENST00000328488	NM_003533.2	29	Agc/Ggc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36846851	36846851	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1166397855		P-0065624-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	49	426	0	ENST00000358127.4:c.1088C>T	p.Pro363Leu	p.P363L	ENST00000358127	NM_001280556.1	363	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0065652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	193	477	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133235962	133235962	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			780	118	506	0	ENST00000320574.5:c.3194G>C	p.Gly1065Ala	p.G1065A	ENST00000320574	NM_006231.2	1065	gGa/gCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0065704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	64	449	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788659	3788659	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	28	332	0	ENST00000262367.5:c.4295C>G	p.Ser1432Cys	p.S1432C	ENST00000262367	NM_004380.2	1432	tCt/tGt																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6213361	6213361	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0065705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	172	440	2	ENST00000252674.7:c.1538A>C	p.Asn513Thr	p.N513T	ENST00000252674	NM_005934.3	513	aAc/aCc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391234	89391234	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	47	318	0	ENST00000336596.2:c.1300C>G	p.Gln434Glu	p.Q434E	ENST00000336596	NM_005233.5	434	Cag/Gag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853380	151853380	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065705-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			34	262	370	0	ENST00000262189.6:c.11722C>G	p.Pro3908Ala	p.P3908A	ENST00000262189	NM_170606.2	3908	Cca/Gca																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0065707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	13	395	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat																																																																															
LATS2	26524	MSKCC	GRCh37	13	21555604	21555604	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs1231018689		P-0065707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	34	406	0	ENST00000382592.4:c.2665+1G>T		p.X889_splice	ENST00000382592	NM_014572.2	889																																																																																
AMER1	139285	MSKCC	GRCh37	X	63413151	63413151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	13	209	0	ENST00000330258.3:c.16G>A	p.Asp6Asn	p.D6N	ENST00000330258	NM_152424.3	6	Gat/Aat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486255	8486255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	37	434	0	ENST00000356435.5:c.2562G>T	p.Gln854His	p.Q854H	ENST00000356435		854	caG/caT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0065707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	118	305	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39550309	39550309	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	33	376	0	ENST00000262039.4:c.420G>T	p.Met140Ile	p.M140I	ENST00000262039	NM_002647.2	140	atG/atT																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326798	62326798	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T			P-0065707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	51	610	0	ENST00000482936.1:c.3617C>T	p.Ser1206Leu	p.S1206L	ENST00000482936		1206	tCa/tTa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438188	56438188	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	26	448	0	ENST00000407977.2:c.805G>T	p.Ala269Ser	p.A269S	ENST00000407977		269	Gcc/Tcc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170552	11170552	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	36	533	0	ENST00000344626.4:c.4759G>T	p.Glu1587Ter	p.E1587*	ENST00000344626	NM_003072.3	1587	Gaa/Taa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31388688	31388688	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	39	411	0	ENST00000328111.2:c.1953C>A	p.Cys651Ter	p.C651*	ENST00000328111	NM_006892.3	651	tgC/tgA																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971161	21971161	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	23	570	0	ENST00000304494.5:c.197A>T	p.His66Leu	p.H66L	ENST00000304494	NM_000077.4	66	cAc/cTc																																																																															
ATRX	546	MSKCC	GRCh37	X	76940018	76940018	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	40	236	0	ENST00000373344.5:c.730A>T	p.Ile244Phe	p.I244F	ENST00000373344	NM_000489.3	244	Att/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0065738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	21	485	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0065739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	295	592	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0065739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	120	474	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112128218	112128218	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	76	306	0	ENST00000257430.4:c.721G>T	p.Glu241Ter	p.E241*	ENST00000257430	NM_000038.5	241	Gaa/Taa																																																																															
AKT1	207	MSKCC	GRCh37	14	105239814	105239816	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0065739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	119	757	0	ENST00000349310.3:c.804_806del	p.Lys268del	p.K268del	ENST00000349310	NM_001014432.1	268	aaGAAc/aac																																																																															
APC	324	MSKCC	GRCh37	5	112175160	112175169	+	frameshift_variant	Frame_Shift_Del	DEL	ATCAGACGAC	ATCAGACGAC	-			P-0065739-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	75	469	0	ENST00000257430.4:c.3870_3879del	p.Gln1291ArgfsTer11	p.Q1291Rfs*11	ENST00000257430	NM_000038.5	1290	aATCAGACGACa/aa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274899	41274899	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	11	309	0	ENST00000349496.5:c.1149G>C	p.Trp383Cys	p.W383C	ENST00000349496	NM_001904.3	383	tgG/tgC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0065742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	13	264	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EZH1	2145	MSKCC	GRCh37	17	40872371	40872371	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs150955298		P-0065742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	33	435	0	ENST00000428826.2:c.584A>G	p.Asn195Ser	p.N195S	ENST00000428826		195	aAt/aGt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562697	176562704	+	frameshift_variant	Frame_Shift_Del	DEL	AATCAGAG	AATCAGAG	-			P-0065742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	35	454	1	ENST00000439151.2:c.596_603del	p.Ser199TrpfsTer9	p.S199Wfs*9	ENST00000439151	NM_022455.4	198	aAATCAGAG/a																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0065744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	47	383	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795061	242795061	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1203794937		P-0065744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			993	64	638	0	ENST00000334409.5:c.148G>A	p.Ala50Thr	p.A50T	ENST00000334409	NM_005018.2	50	Gcc/Acc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170013719	170013719	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1388201066		P-0065744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	18	212	0	ENST00000295797.4:c.1438C>T	p.Arg480Cys	p.R480C	ENST00000295797	NM_002740.5	480	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0065744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	50	390	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425055	49425055	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200156008		P-0065744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			963	56	623	0	ENST00000301067.7:c.13433G>A	p.Arg4478Gln	p.R4478Q	ENST00000301067	NM_003482.3	4478	cGg/cAg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554236	63554237	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0065744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			983	61	674	0	ENST00000307078.5:c.502dup	p.Ser168PhefsTer5	p.S168Ffs*5	ENST00000307078	NM_004655.3	168	tcc/tTcc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273053	18273053	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			972	63	580	0	ENST00000222254.8:c.943G>T	p.Val315Phe	p.V315F	ENST00000222254	NM_005027.3	315	Gtc/Ttc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686334	30686334	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			884	106	601	0	ENST00000359013.4:c.265C>T	p.Gln89Ter	p.Q89*	ENST00000359013	NM_001024847.2	89	Cag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044496	47044497	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0065744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			867	47	585	0	ENST00000329236.7:c.1764dup	p.Glu589ArgfsTer6	p.E589Rfs*6	ENST00000329236	NM_001204466.1	587	caa/cAaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971170	21971184	+	frameshift_variant	Frame_Shift_Del	DEL	AGCAGCTCCGCCACT	AGCAGCTCCGCCACT	G			P-0065744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			873	108	611	0	ENST00000304494.5:c.174_188delinsC	p.Val59AlafsTer56	p.V59Afs*56	ENST00000304494	NM_000077.4	58	cgAGTGGCGGAGCTGCTg/cgCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0065755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	334	601	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584514	48584514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	112	469	0	ENST00000342988.3:c.692del	p.Gly231AlafsTer10	p.G231Afs*10	ENST00000342988	NM_005359.5	229	ctG/ct																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94192672	94192672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			62	43	172	0	ENST00000323929.3:c.1402G>A	p.Asp468Asn	p.D468N	ENST00000323929	NM_005591.3	468	Gat/Aat																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724619	43724619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	194	415	0	ENST00000382044.4:c.3448G>A	p.Glu1150Lys	p.E1150K	ENST00000382044	NM_001141980.1	1150	Gaa/Aaa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2220637	2220637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			940	191	633	0	ENST00000326181.6:c.254G>T	p.Arg85Leu	p.R85L	ENST00000326181	NM_032271.2	85	cGc/cTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600422	10600429	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCCCCC	AAGCCCCC	-			P-0065755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	346	692	0	ENST00000171111.5:c.1426_1433del	p.Gly476Ter	p.G476*	ENST00000171111	NM_203500.1	476	GGGGGCTTt/t																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99169342	99169342	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	128	549	0	ENST00000074304.5:c.1272A>T	p.Gln424His	p.Q424H	ENST00000074304	NM_001134224.1	424	caA/caT																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430999	181430999	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1482	326	681	0	ENST00000325404.1:c.851C>G	p.Pro284Arg	p.P284R	ENST00000325404	NM_003106.3	284	cCg/cGg																																																																															
BTK	695	MSKCC	GRCh37	X	100613397	100613397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			64	164	201	0	ENST00000308731.7:c.1003G>T	p.Val335Phe	p.V335F	ENST00000308731	NM_000061.2	335	Gtt/Ttt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432773	49432773	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0065795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	41	500	0	ENST00000301067.7:c.8367-1G>C		p.X2789_splice	ENST00000301067	NM_003482.3	2789																																																																																
JAK3	3718	MSKCC	GRCh37	19	17950346	17950346	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	34	566	0	ENST00000458235.1:c.1381G>C	p.Gly461Arg	p.G461R	ENST00000458235	NM_000215.3	461	Ggg/Cgg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115119828	115120850	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCAATGCTATTACAAAAAAAAAATCAGTGATTTTAAATGACTATTACAGGATCTTCTCTTCCAGGCAGGTTTTGGTCAGGCAAGGACCTTTAAACATTATGTAAAATATGGTTGATAATATTCACACATTAAAAAAAAGGTGTGTGTCTCCTCACTGGCTCCTTAAGTCTGCAAACATAATCTTAAATTATGCAAAATTGCCTGCTGAACTCGCCCTTGGGTTACAGACACGTGAAGTAGTGTGGGCAAACAAACCAAAATGCCCTTCGATTTCTCTCTGACCAGGGCAGCAGCAGGCCCCTTTAGACCCAGAGGCTAGACTGGAGGGCAGAAAGGGCCGGGGAATGGTGTCAGGCCTCCCAATACCCACACAAAAGGAAAGGGCTTTAAGTTTTTCTCTCTGAGAACAAAATAAAACAGACAACACAACATCAACAAAGAAATAAGGATGTTCCAGGAGGGTTTGAAGAGTGAGTTTCTTGCAGTAGAGTGCCTTTTTTTTTTTTCTTTCCTGCTCCCTGCAGGGATGTCTGTGCTCCACTGAAAAATTCTGTCTGTTCGGGAGGGAACCCAGGATGCAGACCAAATGCAAGACCCATGCAGATGCCCAGGTAAGCTGAAATTTCCTGCCACCGGGGCAGGGCCTGGAAGTCTGTGCATACATTTCTAGGGGAACTAACTTTTCGTCCAAGCCGTAATAACCGACCAACCGACTGTTCTGGGAGCAGAGAAATAAAGGGAGGAAAAAACTCTCCAACAGCTTAGGGGAGGAGGCCCCCACTGCTTACCTTCCCGACTTGGTAATGACCATCTCGGTGCCCCGCTTGTGAAACTGATCCCAAAGTTCTTTAGCCTCCAGGTGCACCTTGGGGTCGTCCTCCACCTCTTCTTCGGGCTCCATGGTCTTCAAAGGCCTCAGATGCGCCTGGGGCCCCAGGGAGGAGAACGGGATGCCGGTCTCGGCCGCCCCCACCAATTGATCCATGATCGGCTTGGCCAGGGCGCCCGGCAGCGAGAGCGCC	TTCAATGCTATTACAAAAAAAAAATCAGTGATTTTAAATGACTATTACAGGATCTTCTCTTCCAGGCAGGTTTTGGTCAGGCAAGGACCTTTAAACATTATGTAAAATATGGTTGATAATATTCACACATTAAAAAAAAGGTGTGTGTCTCCTCACTGGCTCCTTAAGTCTGCAAACATAATCTTAAATTATGCAAAATTGCCTGCTGAACTCGCCCTTGGGTTACAGACACGTGAAGTAGTGTGGGCAAACAAACCAAAATGCCCTTCGATTTCTCTCTGACCAGGGCAGCAGCAGGCCCCTTTAGACCCAGAGGCTAGACTGGAGGGCAGAAAGGGCCGGGGAATGGTGTCAGGCCTCCCAATACCCACACAAAAGGAAAGGGCTTTAAGTTTTTCTCTCTGAGAACAAAATAAAACAGACAACACAACATCAACAAAGAAATAAGGATGTTCCAGGAGGGTTTGAAGAGTGAGTTTCTTGCAGTAGAGTGCCTTTTTTTTTTTTCTTTCCTGCTCCCTGCAGGGATGTCTGTGCTCCACTGAAAAATTCTGTCTGTTCGGGAGGGAACCCAGGATGCAGACCAAATGCAAGACCCATGCAGATGCCCAGGTAAGCTGAAATTTCCTGCCACCGGGGCAGGGCCTGGAAGTCTGTGCATACATTTCTAGGGGAACTAACTTTTCGTCCAAGCCGTAATAACCGACCAACCGACTGTTCTGGGAGCAGAGAAATAAAGGGAGGAAAAAACTCTCCAACAGCTTAGGGGAGGAGGCCCCCACTGCTTACCTTCCCGACTTGGTAATGACCATCTCGGTGCCCCGCTTGTGAAACTGATCCCAAAGTTCTTTAGCCTCCAGGTGCACCTTGGGGTCGTCCTCCACCTCTTCTTCGGGCTCCATGGTCTTCAAAGGCCTCAGATGCGCCTGGGGCCCCAGGGAGGAGAACGGGATGCCGGTCTCGGCCGCCCCCACCAATTGATCCATGATCGGCTTGGCCAGGGCGCCCGGCAGCGAGAGCGCC	-			P-0065795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1	84	0	0	ENST00000257566.3:c.157_389+790del		p.X53_splice	ENST00000257566	NM_016569.3	53																																																																																
DICER1	23405	MSKCC	GRCh37	14	95560445	95560445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	43	460	0	ENST00000343455.3:c.5144T>G	p.Leu1715Arg	p.L1715R	ENST00000343455	NM_177438.2	1715	cTc/cGc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710880	117710881	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0065795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	23	511	0	ENST00000368508.3:c.1391_1392delinsAA	p.Ala464Glu	p.A464E	ENST00000368508	NM_002944.2	464	gCC/gAA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0065797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	149	337	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0065797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	38	230	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0065797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	21	337	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12044463	12044463	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0065797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	18	327	0	ENST00000353533.5:c.1087-1G>A		p.X363_splice	ENST00000353533	NM_003010.3	363																																																																																
RBM10	8241	MSKCC	GRCh37	X	47034444	47034444	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	62	356	0	ENST00000329236.7:c.298G>T	p.Glu100Ter	p.E100*	ENST00000329236	NM_001204466.1	100	Gag/Tag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281200	15281200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	65	637	0	ENST00000263388.2:c.5056G>T	p.Val1686Leu	p.V1686L	ENST00000263388	NM_000435.2	1686	Gtg/Ttg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742099	145742099	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	28	499	0	ENST00000428558.2:c.404C>G	p.Ser135Cys	p.S135C	ENST00000428558	NM_004260.3	135	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0065825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			744	91	764	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	62	679	0	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0065825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	19	332	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344287	118344287	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			737	66	666	0	ENST00000534358.1:c.2413C>T	p.Gln805Ter	p.Q805*	ENST00000534358	NM_005933.3	805	Cag/Tag																																																																															
KIT	3815	MSKCC	GRCh37	4	55598066	55598066	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201165084		P-0065827-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	222	394	0	ENST00000288135.5:c.2263G>A	p.Ala755Thr	p.A755T	ENST00000288135	NM_000222.2	755	Gcc/Acc																																																																															
MDM2	4193	MSKCC	GRCh37	12	69218341	69218341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065827-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	79	356	0	ENST00000462284.1:c.433G>T	p.Val145Leu	p.V145L	ENST00000462284	NM_002392.5	145	Gta/Tta																																																																															
FLT4	2324	MSKCC	GRCh37	5	180051002	180051002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs566339142		P-0065827-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	324	540	0	ENST00000261937.6:c.1481C>T	p.Thr494Met	p.T494M	ENST00000261937	NM_182925.4	494	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730882026		P-0065831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	65	362	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652251	36652251	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	36	452	0	ENST00000244741.5:c.373G>T	p.Glu125Ter	p.E125*	ENST00000244741	NM_000389.4	125	Gag/Tag																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371981	55371981	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1472360404		P-0065831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	39	609	0	ENST00000297316.4:c.671C>T	p.Thr224Met	p.T224M	ENST00000297316	NM_022454.3	224	aCg/aTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970969	21970969	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	90	583	0	ENST00000304494.5:c.389T>G	p.Leu130Arg	p.L130R	ENST00000304494	NM_000077.4	130	cTg/cGg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243778453	243778453	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	24	271	0	ENST00000263826.5:c.572C>A	p.Ala191Glu	p.A191E	ENST00000263826	NM_005465.4	191	gCa/gAa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64135986	64135986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	29	553	0	ENST00000334205.4:c.1247C>T	p.Ala416Val	p.A416V	ENST00000334205	NM_003942.2	416	gCg/gTg																																																																															
RB1	5925	MSKCC	GRCh37	13	48953781	48953781	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0065831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	24	145	0	ENST00000267163.4:c.1384A>T	p.Lys462Ter	p.K462*	ENST00000267163	NM_000321.2	462	Aaa/Taa																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643510	38643510	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	33	429	0	ENST00000299084.4:c.980A>G	p.Lys327Arg	p.K327R	ENST00000299084	NM_152594.2	327	aAa/aGa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467174	99467174	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	26	365	0	ENST00000268035.6:c.2555G>T	p.Trp852Leu	p.W852L	ENST00000268035	NM_000875.3	852	tGg/tTg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14020487	14020487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	44	361	1	ENST00000311895.7:c.458G>T	p.Arg153Leu	p.R153L	ENST00000311895	NM_005236.2	153	cGc/cTc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029171	14029171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	53	468	0	ENST00000311895.7:c.1382G>A	p.Arg461Lys	p.R461K	ENST00000311895	NM_005236.2	461	aGa/aAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29541520	29541520	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs770201871		P-0065831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	18	215	0	ENST00000358273.4:c.1444A>G	p.Thr482Ala	p.T482A	ENST00000358273	NM_001042492.2	482	Aca/Gca																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78519566	78519566	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	42	406	0	ENST00000306801.3:c.137C>G	p.Ala46Gly	p.A46G	ENST00000306801	NM_020761.2	46	gCt/gGt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145701	11145701	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	53	587	0	ENST00000344626.4:c.4063G>T	p.Glu1355Ter	p.E1355*	ENST00000344626	NM_003072.3	1355	Gag/Tag																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936023	49936023	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	36	534	0	ENST00000296474.3:c.1647del	p.Asn550ThrfsTer32	p.N550Tfs*32	ENST00000296474	NM_002447.2	549	ggG/gg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259589	89259589	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	32	444	0	ENST00000336596.2:c.733A>G	p.Ser245Gly	p.S245G	ENST00000336596	NM_005233.5	245	Agt/Ggt																																																																															
ATR	545	MSKCC	GRCh37	3	142224005	142224005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	38	385	0	ENST00000350721.4:c.5172G>T	p.Arg1724Ser	p.R1724S	ENST00000350721	NM_001184.3	1724	agG/agT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535445	66535445	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	40	370	0	ENST00000273854.3:c.16C>A	p.Pro6Thr	p.P6T	ENST00000273854	NM_004439.5	6	Ccc/Acc																																																																															
MSH3	4437	MSKCC	GRCh37	5	80083478	80083478	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	39	351	0	ENST00000265081.6:c.2530G>T	p.Gly844Ter	p.G844*	ENST00000265081	NM_002439.4	844	Gga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112170825	112170825	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	39	361	0	ENST00000257430.4:c.1921A>T	p.Asn641Tyr	p.N641Y	ENST00000257430	NM_000038.5	641	Aat/Tat																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555204	106555205	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0065831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	67	443	0	ENST00000369096.4:c.2321_2322insC	p.Ser775ValfsTer19	p.S775Vfs*19	ENST00000369096	NM_001198.3	774	gtg/gtCg																																																																															
HGF	3082	MSKCC	GRCh37	7	81399236	81399236	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	66	401	0	ENST00000222390.5:c.52C>A	p.His18Asn	p.H18N	ENST00000222390	NM_000601.4	18	Cat/Aat																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371947	55371947	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	49	567	0	ENST00000297316.4:c.637C>G	p.Pro213Ala	p.P213A	ENST00000297316	NM_022454.3	213	Ccg/Gcg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87338512	87338512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	34	400	0	ENST00000277120.3:c.608C>T	p.Ala203Val	p.A203V	ENST00000277120		203	gCa/gTa																																																																															
PGR	5241	MSKCC	GRCh37	11	100999030	100999031	+	missense_variant	Missense_Mutation	DNP	GC	GC	CT			P-0065845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	98	533	0	ENST00000325455.5:c.771_772delinsAG	p.Pro258Ala	p.P258A	ENST00000325455	NM_001202474.3	257	ccGCcg/ccAGcg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965813	18965813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	191	440	3	ENST00000262803.5:c.1391C>T	p.Thr464Met	p.T464M	ENST00000262803	NM_002911.3	464	aCg/aTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163516	47163516	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065845-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	171	337	0	ENST00000409792.3:c.2610A>T	p.Leu870Phe	p.L870F	ENST00000409792	NM_014159.6	870	ttA/ttT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578440	7578440	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs879254249		P-0065848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	83	493	0	ENST00000269305.4:c.490A>G	p.Lys164Glu	p.K164E	ENST00000269305	NM_001126112.2	164	Aag/Gag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770630	40770630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	46	298	0	ENST00000373198.4:c.2752G>A	p.Gly918Arg	p.G918R	ENST00000373198	NM_133170.3	918	Ggg/Agg																																																																															
MGA	23269	MSKCC	GRCh37	15	42003303	42003303	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0065848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	91	420	0	ENST00000219905.7:c.2840C>G	p.Ser947Ter	p.S947*	ENST00000219905	NM_001164273.1	947	tCa/tGa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346879	89346879	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760859183		P-0065848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	60	529	0	ENST00000301030.4:c.6071C>T	p.Pro2024Leu	p.P2024L	ENST00000301030	NM_001256183.1	2024	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0065848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	99	233	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625194	69625194	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	56	469	0	ENST00000334134.2:c.599G>C	p.Arg200Thr	p.R200T	ENST00000334134	NM_005247.2	200	aGa/aCa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112198	115112198	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	50	523	0	ENST00000257566.3:c.1542C>A	p.Asn514Lys	p.N514K	ENST00000257566	NM_016569.3	514	aaC/aaA																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346341	73346341	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	22	291	0	ENST00000377767.4:c.1459G>T	p.Asp487Tyr	p.D487Y	ENST00000377767	NM_014953.3	487	Gac/Tac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291801	15291801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	34	463	0	ENST00000263388.2:c.2965C>T	p.Leu989Phe	p.L989F	ENST00000263388	NM_000435.2	989	Ctc/Ttc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52443886	52443886	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	65	483	0	ENST00000460680.1:c.9G>C	p.Lys3Asn	p.K3N	ENST00000460680	NM_004656.3	3	aaG/aaC																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974648	21974738	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGCTCCCGCTGCAGACCCTCTACCCACCTGGATCGGCCTCCGACCGTAACTATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCAGCAGCG	CCTGCTCCCGCTGCAGACCCTCTACCCACCTGGATCGGCCTCCGACCGTAACTATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCAGCAGCG	-			P-0065848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	16	487	0	ENST00000304494.5:c.89_150+29del		p.X30_splice	ENST00000304494	NM_000077.4	30																																																																																
IRF4	3662	MSKCC	GRCh37	6	394942	394942	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs944381620		P-0065869-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	55	502	0	ENST00000380956.4:c.338G>A	p.Arg113Gln	p.R113Q	ENST00000380956	NM_001195286.1	113	cGg/cAg																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222578	6222578	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0065869-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	22	553	0	ENST00000252674.7:c.664C>T	p.Gln222Ter	p.Q222*	ENST00000252674	NM_005934.3	222	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0065871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	154	473	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970971	21970971	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	165	665	0	ENST00000304494.5:c.387C>A	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taC/taA																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	101	524	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023150	31023150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			714	105	617	0	ENST00000375687.4:c.2635G>A	p.Asp879Asn	p.D879N	ENST00000375687	NM_015338.5	879	Gat/Aat																																																																															
RB1	5925	MSKCC	GRCh37	13	48941663	48941663	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	35	191	0	ENST00000267163.4:c.973T>A	p.Tyr325Asn	p.Y325N	ENST00000267163	NM_000321.2	325	Tat/Aat																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683694	162683694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	48	461	0	ENST00000366898.1:c.275C>T	p.Ala92Val	p.A92V	ENST00000366898	NM_004562.2	92	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0065872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	219	609	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0065872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	203	450	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625348	69625348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	205	623	0	ENST00000334134.2:c.445G>A	p.Ala149Thr	p.A149T	ENST00000334134	NM_005247.2	149	Gcc/Acc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109879	115109879	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1268167495		P-0065872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	34	579	0	ENST00000257566.3:c.1999G>A	p.Ala667Thr	p.A667T	ENST00000257566	NM_016569.3	667	Gcg/Acg																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89791101	89791101	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	33	414	0	ENST00000336032.3:c.488A>G	p.Asp163Gly	p.D163G	ENST00000336032	NM_006813.2	163	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0065875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	209	502	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226330	2226330	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778416555		P-0065875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	256	634	0	ENST00000326181.6:c.1943C>T	p.Ala648Val	p.A648V	ENST00000326181	NM_032271.2	648	gCg/gTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	213	461	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578471	7578471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	229	624	0	ENST00000269305.4:c.459del	p.Gly154AlafsTer16	p.G154Afs*16	ENST00000269305	NM_001126112.2	153	ccC/cc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419949	152419949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	184	459	0	ENST00000206249.3:c.1636G>A	p.Ala546Thr	p.A546T	ENST00000206249	NM_000125.3	546	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112137081	112137081	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0065875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	93	343	0	ENST00000257430.4:c.834+1G>T		p.X278_splice	ENST00000257430	NM_000038.5	278																																																																																
RPS6KA4	8986	MSKCC	GRCh37	11	64132824	64132824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	65	559	0	ENST00000334205.4:c.958C>T	p.Pro320Ser	p.P320S	ENST00000334205	NM_003942.2	320	Ccc/Tcc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455042	50455042	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0065875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	148	361	0	ENST00000331340.3:c.590-1G>C		p.X197_splice	ENST00000331340	NM_006060.4	197																																																																																
ATXN7	6314	MSKCC	GRCh37	3	63898889	63898889	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	30	394	0	ENST00000295900.6:c.382del	p.Leu128SerfsTer95	p.L128Sfs*95	ENST00000295900	NM_000333.3	128	Ctc/tc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	53	575	1	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519963		P-0065877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	31	310	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913233		P-0065877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	57	650	0	ENST00000311189.7:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000311189		61	cAg/cTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2213956	2213957	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0065877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	37	492	0	ENST00000398665.3:c.1773_1774del	p.Leu592ProfsTer74	p.L592Pfs*74	ENST00000398665	NM_032482.2	590	CGc/c																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227783	53227783	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370840799		P-0065877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	25	438	0	ENST00000375401.3:c.2405G>A	p.Arg802His	p.R802H	ENST00000375401	NM_004187.3	802	cGt/cAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70341609	70341609	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	45	543	0	ENST00000374080.3:c.1044C>A	p.Asp348Glu	p.D348E	ENST00000374080		348	gaC/gaA																																																																															
MED12	9968	MSKCC	GRCh37	X	70356847	70356847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	43	547	0	ENST00000374080.3:c.5519G>T	p.Gly1840Val	p.G1840V	ENST00000374080		1840	gGc/gTc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519922		P-0064407-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			521	11	507	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578441	7578441	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0064407-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			834	55	648	0	ENST00000269305.4:c.489C>G	p.Tyr163Ter	p.Y163*	ENST00000269305	NM_001126112.2	163	taC/taG																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs750808726		P-0065588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	211	550	2	ENST00000261937.6:c.1267dup	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016647	12016648	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0065588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			75	201	356	0	ENST00000353533.5:c.783_784del	p.Asp263CysfsTer4	p.D263Cfs*4	ENST00000353533	NM_003010.3	261	acAAga/acga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061348	38061348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	141	451	0	ENST00000250448.2:c.641G>T	p.Trp214Leu	p.W214L	ENST00000250448	NM_004496.3	214	tGg/tTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226197	53226197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	222	348	0	ENST00000375401.3:c.2652G>T	p.Gln884His	p.Q884H	ENST00000375401	NM_004187.3	884	caG/caT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0065590-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	21	312	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11294261	11294261	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	141	427	0	ENST00000361445.4:c.2270T>C	p.Leu757Pro	p.L757P	ENST00000361445	NM_004958.3	757	cTg/cCg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599234	28599234	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	71	561	0	ENST00000253063.3:c.685del	p.Gln229ArgfsTer18	p.Q229Rfs*18	ENST00000253063	NM_031459.4	227	gCc/gc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78426110	78426110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	143	490	0	ENST00000370768.2:c.1415C>A	p.Pro472His	p.P472H	ENST00000370768	NM_003902.3	472	cCt/cAt																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699428	117699428	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	58	390	0	ENST00000369458.3:c.213G>A	p.Trp71Ter	p.W71*	ENST00000369458	NM_024626.3	71	tgG/tgA																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462933	120462933	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1450649026		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	144	514	0	ENST00000256646.2:c.5398C>T	p.Arg1800Cys	p.R1800C	ENST00000256646	NM_024408.3	1800	Cgt/Tgt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465372	120465372	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1230304595		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	136	531	0	ENST00000256646.2:c.4889G>A	p.Arg1630His	p.R1630H	ENST00000256646	NM_024408.3	1630	cGc/cAc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201980293	201980293	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	146	433	0	ENST00000359651.3:c.33del	p.Phe11LeufsTer32	p.F11Lfs*32	ENST00000359651		10	aTt/at																																																																															
RET	5979	MSKCC	GRCh37	10	43615146	43615146	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	49	510	0	ENST00000355710.3:c.2560T>A	p.Phe854Ile	p.F854I	ENST00000355710	NM_020975.4	854	Ttt/Att																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724426	112724426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	154	438	0	ENST00000369452.4:c.310C>T	p.Arg104Cys	p.R104C	ENST00000369452	NM_007373.3	104	Cgt/Tgt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64135692	64135692	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368450242		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	136	478	0	ENST00000334205.4:c.1160G>A	p.Arg387Gln	p.R387Q	ENST00000334205	NM_003942.2	387	cGg/cAg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77070009	77070009	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	44	481	0	ENST00000356341.3:c.531G>T	p.Glu177Asp	p.E177D	ENST00000356341	NM_002576.4	177	gaG/gaT																																																																															
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	97	348	0	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	160	511	3	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
RAD52	5893	MSKCC	GRCh37	12	1039243	1039243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	38	447	0	ENST00000358495.3:c.254C>T	p.Ala85Val	p.A85V	ENST00000358495	NM_134424.2	85	gCa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913528		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	68	350	0	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230555	46230556	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	79	416	0	ENST00000334344.6:c.805_806del	p.Leu269IlefsTer10	p.L269Ifs*10	ENST00000334344	NM_152641.2	268	tcTTta/tcta																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856391	111856391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	136	480	0	ENST00000341259.2:c.442C>T	p.Arg148Cys	p.R148C	ENST00000341259	NM_005475.2	148	Cgc/Tgc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856434	111856434	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776317487		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	129	505	2	ENST00000341259.2:c.489del	p.Thr165ProfsTer32	p.T165Pfs*32	ENST00000341259	NM_005475.2	162	gCc/gc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112212	115112212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	135	545	0	ENST00000257566.3:c.1528C>T	p.Gln510Ter	p.Q510*	ENST00000257566	NM_016569.3	510	Caa/Taa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434170	121434170	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757068809		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	148	592	0	ENST00000257555.6:c.1061C>T	p.Thr354Met	p.T354M	ENST00000257555		354	aCg/aTg																																																																															
RB1	5925	MSKCC	GRCh37	13	49030479	49030479	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	105	292	0	ENST00000267163.4:c.1959del	p.Val654CysfsTer4	p.V654Cfs*4	ENST00000267163	NM_000321.2	652	Aaa/aa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436791	110436793	+	inframe_deletion	In_Frame_Del	DEL	CCG	CCG	-	rs769193882		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	113	527	7	ENST00000375856.3:c.1608_1610del	p.Gly537del	p.G537del	ENST00000375856	NM_003749.2	536	ggCGGt/ggt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43738680	43738681	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	68	451	0	ENST00000382044.4:c.2944dup	p.Ala982GlyfsTer7	p.A982Gfs*7	ENST00000382044	NM_001141980.1	982	gct/gGct																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	136	459	2	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354356	354356	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781736051		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	112	410	0	ENST00000262320.3:c.1202G>A	p.Arg401His	p.R401H	ENST00000262320	NM_003502.3	401	cGc/cAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134569	2134569	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1409601473		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	66	631	0	ENST00000219476.3:c.4351del	p.Arg1451AlafsTer25	p.R1451Afs*25	ENST00000219476	NM_000548.3	1449	tCc/tc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858152	9858152	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	120	484	0	ENST00000330684.3:c.3249G>T	p.Lys1083Asn	p.K1083N	ENST00000330684	NM_001134407.1	1083	aaG/aaT																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923497	9923497	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	73	381	0	ENST00000330684.3:c.1790C>A	p.Pro597His	p.P597H	ENST00000330684	NM_001134407.1	597	cCt/cAt																																																																															
CDH1	999	MSKCC	GRCh37	16	68842662	68842662	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	158	451	2	ENST00000261769.5:c.602del	p.Pro201LeufsTer14	p.P201Lfs*14	ENST00000261769	NM_004360.3	200	Ccc/cc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969978	81969978	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755551138		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	105	443	0	ENST00000359376.3:c.3047C>T	p.Thr1016Met	p.T1016M	ENST00000359376	NM_002661.3	1016	aCg/aTg																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544554	86544554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	138	507	0	ENST00000262426.4:c.379G>A	p.Ala127Thr	p.A127T	ENST00000262426	NM_001451.2	127	Gcc/Acc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349702	89349702	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	137	400	0	ENST00000301030.4:c.3248G>T	p.Gly1083Val	p.G1083V	ENST00000301030	NM_001256183.1	1083	gGg/gTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89806459	89806459	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1015729981		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	73	411	0	ENST00000389301.3:c.3877G>A	p.Glu1293Lys	p.E1293K	ENST00000389301	NM_000135.2	1293	Gag/Aag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	120	304	0	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66526546	66526546	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs387906692		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	91	429	0	ENST00000358598.2:c.1102C>T	p.Arg368Ter	p.R368*	ENST00000358598	NM_212471.2	368	Cga/Tga																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732279	74732279	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	143	513	0	ENST00000359995.5:c.630del	p.Lys211SerfsTer21	p.K211Sfs*21	ENST00000359995	NM_001195427.1	210	ccC/cc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78931483	78931483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766868607		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	66	431	0	ENST00000306801.3:c.3430G>A	p.Val1144Met	p.V1144M	ENST00000306801	NM_020761.2	1144	Gtg/Atg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619172	1619172	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374199541		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	98	628	0	ENST00000344749.5:c.1388C>T	p.Ala463Val	p.A463V	ENST00000344749	NM_001136139.2	463	gCg/gTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2191072	2191072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	74	498	1	ENST00000398665.3:c.326A>G	p.His109Arg	p.H109R	ENST00000398665	NM_032482.2	109	cAt/cGt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226899	2226899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762029066		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	137	603	0	ENST00000398665.3:c.4379C>T	p.Thr1460Met	p.T1460M	ENST00000398665	NM_032482.2	1460	aCg/aTg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4090658	4090658	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs565860695		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	114	383	0	ENST00000262948.5:c.1141G>A	p.Gly381Ser	p.G381S	ENST00000262948	NM_030662.3	381	Ggc/Agc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231539	5231539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760884281		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	57	441	0	ENST00000357368.4:c.1937C>T	p.Thr646Met	p.T646M	ENST00000357368	NM_002850.3	646	aCg/aTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7184585	7184585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	136	421	0	ENST00000302850.5:c.716G>A	p.Cys239Tyr	p.C239Y	ENST00000302850	NM_000208.2	239	tGc/tAc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265645	10265645	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	45	480	0	ENST00000340748.4:c.1532T>G	p.Ile511Ser	p.I511S	ENST00000340748		511	aTt/aGt																																																																															
CARM1	10498	MSKCC	GRCh37	19	11024683	11024683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	139	480	0	ENST00000327064.4:c.800G>A	p.Arg267His	p.R267H	ENST00000327064	NM_199141.1	267	cGc/cAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298120	15298120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376606994		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	98	464	1	ENST00000263388.2:c.1636G>A	p.Val546Met	p.V546M	ENST00000263388	NM_000435.2	546	Gtg/Atg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953860	17953860	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746488415		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	122	606	0	ENST00000458235.1:c.542C>T	p.Pro181Leu	p.P181L	ENST00000458235	NM_000215.3	181	cCg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36208928	36208928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	39	235	0	ENST00000222270.7:c.8C>T	p.Ala3Val	p.A3V	ENST00000222270	NM_014727.1	3	gCg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224087	36224087	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	121	415	1	ENST00000222270.7:c.6641del	p.Pro2214GlnfsTer2	p.P2214Qfs*2	ENST00000222270	NM_014727.1	2213	Ccc/cc																																																																															
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	147	481	0	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																															
CIC	23152	MSKCC	GRCh37	19	42793444	42793444	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	164	493	0	ENST00000575354.2:c.1246C>G	p.Pro416Ala	p.P416A	ENST00000575354	NM_015125.3	416	Ccc/Gcc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519946		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	165	496	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	55	546	2	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
PMS1	5378	MSKCC	GRCh37	2	190660592	190660595	+	frameshift_variant	Frame_Shift_Del	DEL	AAAT	AAAT	-			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	104	360	0	ENST00000441310.2:c.235_238del	p.Asn79ValfsTer8	p.N79Vfs*8	ENST00000441310	NM_000534.4	77	aAAATa/aa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212537950	212537950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	56	383	0	ENST00000342788.4:c.1655G>A	p.Cys552Tyr	p.C552Y	ENST00000342788	NM_005235.2	552	tGt/tAt																																																																															
BARD1	580	MSKCC	GRCh37	2	215609818	215609818	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	98	307	0	ENST00000260947.4:c.1876A>G	p.Asn626Asp	p.N626D	ENST00000260947	NM_000465.2	626	Aat/Gat																																																																															
BARD1	580	MSKCC	GRCh37	2	215645490	215645490	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781596		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	139	465	0	ENST00000260947.4:c.1108C>T	p.Arg370Cys	p.R370C	ENST00000260947	NM_000465.2	370	Cgt/Tgt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	88	557	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375061	31375061	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147421711		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	145	475	0	ENST00000328111.2:c.458C>T	p.Ser153Leu	p.S153L	ENST00000328111	NM_006892.3	153	tCg/tTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730832	40730832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	157	508	0	ENST00000373198.4:c.3703C>T	p.Arg1235Cys	p.R1235C	ENST00000373198	NM_133170.3	1235	Cgc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41818336	41818336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	69	548	0	ENST00000373198.4:c.38T>C	p.Leu13Pro	p.L13P	ENST00000373198	NM_133170.3	13	cTg/cCg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259202	36259202	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	101	495	0	ENST00000300305.3:c.289T>G	p.Phe97Val	p.F97V	ENST00000300305		97	Ttc/Gtc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	123	465	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30730003	30730003	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	122	378	0	ENST00000359013.4:c.1599G>T	p.Gln533His	p.Q533H	ENST00000359013	NM_001024847.2	533	caG/caT																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067255	37067255	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	118	456	0	ENST00000231790.2:c.1168del	p.Glu390AsnfsTer11	p.E390Nfs*11	ENST00000231790	NM_000249.3	389	cGg/cg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47142975	47142975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	111	302	0	ENST00000409792.3:c.4988C>T	p.Thr1663Met	p.T1663M	ENST00000409792	NM_014159.6	1663	aCg/aTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165510	47165510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	182	599	0	ENST00000409792.3:c.616G>A	p.Ala206Thr	p.A206T	ENST00000409792	NM_014159.6	206	Gca/Aca																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72842110	72842110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	123	307	0	ENST00000325599.8:c.1138G>A	p.Asp380Asn	p.D380N	ENST00000325599	NM_018130.2	380	Gat/Aat																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204984	128204984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	128	532	0	ENST00000341105.2:c.457G>A	p.Gly153Arg	p.G153R	ENST00000341105	NM_032638.4	153	Ggg/Agg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920520	134920520	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	98	412	0	ENST00000398015.3:c.2335A>G	p.Thr779Ala	p.T779A	ENST00000398015	NM_004441.4	779	Acc/Gcc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413668	138413668	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	66	400	0	ENST00000289153.2:c.1852T>C	p.Tyr618His	p.Y618H	ENST00000289153	NM_006219.2	618	Tac/Cac																																																																															
ATR	545	MSKCC	GRCh37	3	142224123	142224123	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	135	385	0	ENST00000350721.4:c.5054A>G	p.Glu1685Gly	p.E1685G	ENST00000350721	NM_001184.3	1685	gAa/gGa																																																																															
TP63	8626	MSKCC	GRCh37	3	189612286	189612286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	122	420	0	ENST00000264731.3:c.2038G>A	p.Glu680Lys	p.E680K	ENST00000264731	NM_003722.4	680	Gag/Aag																																																																															
REST	5978	MSKCC	GRCh37	4	57796354	57796355	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	135	410	0	ENST00000309042.7:c.1336dup	p.Thr446AsnfsTer18	p.T446Nfs*18	ENST00000309042	NM_005612.4	444	gaa/gAaa																																																																															
REST	5978	MSKCC	GRCh37	4	57797468	57797469	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	136	565	0	ENST00000309042.7:c.2447_2448del	p.Leu816ProfsTer4	p.L816Pfs*4	ENST00000309042	NM_005612.4	815	cCT/c																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201749	66201749	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	122	442	0	ENST00000273854.3:c.2753A>G	p.Glu918Gly	p.E918G	ENST00000273854	NM_004439.5	918	gAg/gGg																																																																															
TET2	54790	MSKCC	GRCh37	4	106196213	106196213	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs370735654		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	148	410	1	ENST00000380013.4:c.4546C>T	p.Arg1516Ter	p.R1516*	ENST00000380013	NM_001127208.2	1516	Cga/Tga																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143043305	143043305	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	44	317	0	ENST00000262992.4:c.2111T>C	p.Val704Ala	p.V704A	ENST00000262992	NM_001101669.1	704	gTg/gCg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295674	1295674	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	142	601	0				ENST00000310581	NM_198253.2																																																																																	
RICTOR	253260	MSKCC	GRCh37	5	38950345	38950345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	116	440	0	ENST00000357387.3:c.3605G>T	p.Arg1202Met	p.R1202M	ENST00000357387	NM_152756.3	1202	aGg/aTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79950733	79950733	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	117	397	2	ENST00000265081.6:c.191del	p.Pro64GlnfsTer16	p.P64Qfs*16	ENST00000265081	NM_002439.4	63	Ccc/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	218	303	0	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	139	438	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	151	486	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176700669	176700671	+	splice_acceptor_variant,intron_variant	Splice_Site	ONP	ATA	ATA	CTG			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	50	364	0	ENST00000439151.2:c.5510-4_5510-2delinsCTG		p.X1837_splice	ENST00000439151	NM_022455.4	1837																																																																																
MDC1	9656	MSKCC	GRCh37	6	30681090	30681090	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61754764		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	215	420	0	ENST00000376406.3:c.629C>T	p.Pro210Leu	p.P210L	ENST00000376406	NM_014641.2	210	cCg/cTg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	81	349	1	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
TAP1	6890	MSKCC	GRCh37	6	32813469	32813469	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	51	421	0	ENST00000354258.4:c.2314A>C	p.Ile772Leu	p.I772L	ENST00000354258	NM_000593.5	772	Atc/Ctc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967888	93967888	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	49	350	0	ENST00000369303.4:c.2039del	p.Leu680CysfsTer29	p.L680Cfs*29	ENST00000369303	NM_004440.3	680	tTg/tg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528051	157528051	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	158	527	0	ENST00000346085.5:c.5776C>T	p.Arg1926Ter	p.R1926*	ENST00000346085	NM_020732.3	1926	Cga/Tga																																																																															
SMO	6608	MSKCC	GRCh37	7	128850945	128850945	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762491039		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	93	393	0	ENST00000249373.3:c.1792G>A	p.Gly598Arg	p.G598R	ENST00000249373	NM_005631.4	598	Ggg/Agg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012386	152012386	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	106	381	0	ENST00000262189.6:c.427del	p.Ser143ValfsTer3	p.S143Vfs*3	ENST00000262189	NM_170606.2	143	Agt/gt																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194608	29194608	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs552819707		P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	135	522	0	ENST00000240100.2:c.1120G>A	p.Val374Met	p.V374M	ENST00000240100	NM_001394.6	374	Gtg/Atg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741992	145741992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	141	524	1	ENST00000428558.2:c.511C>T	p.Arg171Trp	p.R171W	ENST00000428558	NM_004260.3	171	Cgg/Tgg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128322020	128322020	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	225	388	0	ENST00000265960.3:c.740del	p.Pro247ArgfsTer27	p.P247Rfs*27	ENST00000265960	NM_001006617.1	247	cCg/cg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137293721	137293721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	106	431	0	ENST00000481739.1:c.272G>A	p.Ser91Asn	p.S91N	ENST00000481739	NM_002957.4	91	aGc/aAc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222477	53222477	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065591-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	129	278	0	ENST00000375401.3:c.4355del	p.Gly1452AlafsTer26	p.G1452Afs*26	ENST00000375401	NM_004187.3	1452	gGc/gc																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0065614-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			365	223	428	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																															
CCND2	894	MSKCC	GRCh37	12	4409038	4409038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065614-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			362	49	374	0	ENST00000261254.3:c.733G>T	p.Ala245Ser	p.A245S	ENST00000261254	NM_001759.3	245	Gct/Tct																																																																															
NPM1	4869	MSKCC	GRCh37	5	170827156	170827157	+	inframe_insertion,splice_region_variant	In_Frame_Ins	INS	-	-	TGA	rs746541921		P-0065614-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			314	27	245	0	ENST00000296930.5:c.538_540dup	p.Asp180dup	p.D180dup	ENST00000296930	NM_002520.6	180	gat/gaTGAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0065718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	116	409	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431516	49431516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	223	745	0	ENST00000301067.7:c.9623C>T	p.Ser3208Phe	p.S3208F	ENST00000301067	NM_003482.3	3208	tCc/tTc																																																																															
TEK	7010	MSKCC	GRCh37	9	27172705	27172705	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	76	607	0	ENST00000380036.4:c.720C>G	p.Cys240Trp	p.C240W	ENST00000380036	NM_000459.3	240	tgC/tgG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501191		P-0063730-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			409	159	417	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393421	139393421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063730-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			610	186	309	0	ENST00000277541.6:c.6110C>T	p.Ala2037Val	p.A2037V	ENST00000277541	NM_017617.3	2037	gCc/gTc																																																																															
RB1	5925	MSKCC	GRCh37	13	48936978	48936978	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0063730-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			324	113	484	0	ENST00000267163.4:c.746C>A	p.Ser249Ter	p.S249*	ENST00000267163	NM_000321.2	249	tCa/tAa																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867706	45867706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063730-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			773	96	414	0	ENST00000391945.4:c.694G>T	p.Val232Phe	p.V232F	ENST00000391945	NM_000400.3	232	Gtc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0063730-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			358	116	369	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CYLD	1540	MSKCC	GRCh37	16	50828224	50828224	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063730-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			527	140	456	0	ENST00000398568.2:c.2562G>T	p.Gln854His	p.Q854H	ENST00000398568	NM_001042412.1	854	caG/caT																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99170834	99170834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063730-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			584	198	573	0	ENST00000074304.5:c.1463C>T	p.Pro488Leu	p.P488L	ENST00000074304	NM_001134224.1	488	cCc/cTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32172057	32172057	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063730-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			751	285	450	0	ENST00000375023.3:c.2975G>C	p.Cys992Ser	p.C992S	ENST00000375023	NM_004557.3	992	tGt/tCt																																																																															
ETV1	2115	MSKCC	GRCh37	7	14028641	14028641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063730-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			390	65	408	0	ENST00000405192.2:c.37G>A	p.Val13Ile	p.V13I	ENST00000405192	NM_001163147.1	13	Gtc/Atc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845222	151845222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063730-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			666	165	588	0	ENST00000262189.6:c.13790G>T	p.Arg4597Leu	p.R4597L	ENST00000262189	NM_170606.2	4597	cGc/cTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913389		P-0065337-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			547	384	645	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882025		P-0065337-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			887	304	581	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065337-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			821	237	483	0	ENST00000269305.4:c.772del	p.Glu258LysfsTer87	p.E258Kfs*87	ENST00000269305	NM_001126112.2	258	Gaa/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089547	27089547	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065337-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			678	359	590	0	ENST00000324856.7:c.2503A>T	p.Met835Leu	p.M835L	ENST00000324856	NM_006015.4	835	Atg/Ttg																																																																															
TET1	80312	MSKCC	GRCh37	10	70405193	70405193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065337-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			550	288	544	0	ENST00000373644.4:c.2707G>T	p.Ala903Ser	p.A903S	ENST00000373644	NM_030625.2	903	Gcc/Tcc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121437370	121437370	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065337-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			828	111	601	0	ENST00000257555.6:c.1708C>T	p.Gln570Ter	p.Q570*	ENST00000257555		570	Cag/Tag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135376	30135376	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065337-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			573	149	412	0	ENST00000331968.5:c.442G>T	p.Ala148Ser	p.A148S	ENST00000331968	NM_002742.2	148	Gct/Tct																																																																															
MGA	23269	MSKCC	GRCh37	15	42003500	42003500	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065337-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			738	238	472	0	ENST00000219905.7:c.3037A>G	p.Thr1013Ala	p.T1013A	ENST00000219905	NM_001164273.1	1013	Aca/Gca																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81888167	81888167	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065337-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			751	85	493	0	ENST00000359376.3:c.312C>A	p.Phe104Leu	p.F104L	ENST00000359376	NM_002661.3	104	ttC/ttA																																																																															
EZH1	2145	MSKCC	GRCh37	17	40858025	40858025	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0065337-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			778	228	454	0	ENST00000428826.2:c.1839G>C	p.Lys613Asn	p.K613N	ENST00000428826		613	aaG/aaC																																																																															
EP300	2033	MSKCC	GRCh37	22	41574691	41574691	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065337-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			837	306	598	0	ENST00000263253.7:c.6976A>G	p.Ser2326Gly	p.S2326G	ENST00000263253	NM_001429.3	2326	Agt/Ggt																																																																															
KDR	3791	MSKCC	GRCh37	4	55968528	55968528	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0065337-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			760	131	360	0	ENST00000263923.4:c.2134+1G>A		p.X712_splice	ENST00000263923	NM_002253.2	712																																																																																
FAT1	2195	MSKCC	GRCh37	4	187630457	187630457	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065337-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			636	353	586	0	ENST00000441802.2:c.525T>A	p.Asp175Glu	p.D175E	ENST00000441802	NM_005245.3	175	gaT/gaA																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753099	57753099	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065337-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			561	329	542	0	ENST00000274289.3:c.917C>A	p.Pro306His	p.P306H	ENST00000274289	NM_006622.3	306	cCt/cAt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671868	30671868	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065337-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			835	153	604	0	ENST00000376406.3:c.5092C>A	p.Pro1698Thr	p.P1698T	ENST00000376406	NM_014641.2	1698	Cct/Act																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157470060	157470060	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065337-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			869	158	589	0	ENST00000346085.5:c.2854G>T	p.Ala952Ser	p.A952S	ENST00000346085	NM_020732.3	952	Gct/Tct																																																																															
AXL	558	MSKCC	GRCh37	19	41727849	41727874	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCTGCCAAGCTCAGGGACCCCCAG	GAGCTGCCAAGCTCAGGGACCCCCAG	ACTCTGGCTTCAACCTACTCA			P-0065337-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			534	303	516	2	ENST00000301178.4:c.474_499delinsACTCTGGCTTCAACCTACTCA	p.Ser159LeufsTer49	p.S159Lfs*49	ENST00000301178	NM_021913.4	158	ctGAGCTGCCAAGCTCAGGGACCCCCAGag/ctACTCTGGCTTCAACCTACTCAag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0065563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	52	283	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239940	53239940	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	60	323	0	ENST00000375401.3:c.1501T>C	p.Trp501Arg	p.W501R	ENST00000375401	NM_004187.3	501	Tgg/Cgg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120510790	120510790	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	49	379	0	ENST00000256646.2:c.1174A>T	p.Thr392Ser	p.T392S	ENST00000256646	NM_024408.3	392	Acc/Tcc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55214329	55214329	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	69	342	0	ENST00000275493.2:c.455A>G	p.Asn152Ser	p.N152S	ENST00000275493	NM_005228.3	152	aAc/aGc																																																																															
HGF	3082	MSKCC	GRCh37	7	81346553	81346553	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	76	302	0	ENST00000222390.5:c.1400C>G	p.Ser467Cys	p.S467C	ENST00000222390	NM_000601.4	467	tCt/tGt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739467	145739467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	43	443	0	ENST00000428558.2:c.1903C>T	p.His635Tyr	p.H635Y	ENST00000428558	NM_004260.3	635	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	33	472	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602764	10602764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	8	630	0	ENST00000171111.5:c.814C>T	p.Arg272Cys	p.R272C	ENST00000171111	NM_203500.1	272	Cgc/Tgc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162475165	162475165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	10	444	0	ENST00000366898.1:c.576G>A	p.Met192Ile	p.M192I	ENST00000366898	NM_004562.2	192	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0065722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	55	520	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0065722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	94	381	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0065722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	37	386	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729154	66729154	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519731		P-0065722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	66	399	0	ENST00000307102.5:c.362G>C	p.Cys121Ser	p.C121S	ENST00000307102	NM_002755.3	121	tGc/tCc																																																																															
MGA	23269	MSKCC	GRCh37	15	42052633	42052633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	88	408	0	ENST00000219905.7:c.7304G>A	p.Arg2435Gln	p.R2435Q	ENST00000219905	NM_001164273.1	2435	cGg/cAg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118347553	118347553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	34	356	0	ENST00000534358.1:c.3190C>T	p.Arg1064Ter	p.R1064*	ENST00000534358	NM_005933.3	1064	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448293	56448293	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	42	466	0	ENST00000407977.2:c.354del	p.Cys119AlafsTer39	p.C119Afs*39	ENST00000407977		118	ccC/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913527		P-0065722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	25	220	0	ENST00000256078.4:c.436G>C	p.Ala146Pro	p.A146P	ENST00000256078	NM_033360.2	146	Gca/Cca																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115282320	115282320	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0065722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	15	281	0	ENST00000438362.2:c.330A>C	p.Lys110Asn	p.K110N	ENST00000438362	NM_001242891.1	110	aaA/aaC																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435223	56435224	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0065722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	68	584	0	ENST00000407977.2:c.1913dup	p.Ser638ArgfsTer109	p.S638Rfs*109	ENST00000407977		638	agt/agGt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877363	40877363	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065722-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	26	401	0	ENST00000373198.4:c.2333T>A	p.Ile778Asn	p.I778N	ENST00000373198	NM_133170.3	778	aTc/aAc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0065723-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	225	388	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151875096	151875096	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0065723-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	34	136	0	ENST00000262189.6:c.7443-1G>C		p.X2481_splice	ENST00000262189	NM_170606.2	2481																																																																																
RPS6KA4	8986	MSKCC	GRCh37	11	64127986	64127986	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0065723-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1022	259	561	0	ENST00000334205.4:c.384C>G	p.Tyr128Ter	p.Y128*	ENST00000334205	NM_003942.2	128	taC/taG																																																																															
PPARG	5468	MSKCC	GRCh37	3	12447415	12447415	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065723-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			909	101	511	0	ENST00000287820.6:c.654G>C	p.Lys218Asn	p.K218N	ENST00000287820	NM_015869.4	218	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0065724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	135	574	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0065724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	75	571	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0065724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			712	139	729	2	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0065724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	57	498	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100999	41100999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1371429276		P-0065724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	181	611	0	ENST00000373198.4:c.1357C>T	p.Arg453Cys	p.R453C	ENST00000373198	NM_133170.3	453	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175463	112175464	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0065724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	65	576	0	ENST00000257430.4:c.4174dup	p.Ser1392PhefsTer3	p.S1392Ffs*3	ENST00000257430	NM_000038.5	1391	agt/agTt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638467	176638467	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587784095		P-0065724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	109	660	0	ENST00000439151.2:c.3067C>T	p.Arg1023Ter	p.R1023*	ENST00000439151	NM_022455.4	1023	Cga/Tga																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553602	106553602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			832	107	664	0	ENST00000369096.4:c.1567G>A	p.Ala523Thr	p.A523T	ENST00000369096	NM_001198.3	523	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0065724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	89	377	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100204	27100204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			860	231	746	1	ENST00000324856.7:c.4000C>T	p.Gln1334Ter	p.Q1334*	ENST00000324856	NM_006015.4	1334	Caa/Taa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508112	106508112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	87	684	0	ENST00000359195.3:c.106G>T	p.Glu36Ter	p.E36*	ENST00000359195	NM_002649.2	36	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112174474	112174475	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	G			P-0065724-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	49	546	0	ENST00000257430.4:c.3183_3184delinsG	p.Gln1062LysfsTer64	p.Q1062Kfs*64	ENST00000257430	NM_000038.5	1061	aaACaa/aaGaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs786203436		P-0064934-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			364	64	758	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602583	10602583	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0064934-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			338	55	716	0	ENST00000171111.5:c.995del	p.Gly332AlafsTer68	p.G332Afs*68	ENST00000171111	NM_203500.1	332	gGc/gc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248497	212248497	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064934-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	35	689	0	ENST00000342788.4:c.3770A>T	p.Asp1257Val	p.D1257V	ENST00000342788	NM_005235.2	1257	gAc/gTc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161862	47161862	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064934-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	69	553	0	ENST00000409792.3:c.4264C>T	p.Gln1422Ter	p.Q1422*	ENST00000409792	NM_014159.6	1422	Cag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868277	37868297	+	inframe_deletion	In_Frame_Del	DEL	AGTGCAGCAAGCCCTGTGCCC	AGTGCAGCAAGCCCTGTGCCC	-			P-0064934-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	111	706	0	ENST00000269571.5:c.998_1018del	p.Lys333_Ala339del	p.K333_A339del	ENST00000269571		333	aAGTGCAGCAAGCCCTGTGCCCga/aga																																																																															
STK11	6794	MSKCC	GRCh37	19	1221947	1221947	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0064934-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			263	58	534	0	ENST00000326873.7:c.863-1G>C		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																																
DICER1	23405	MSKCC	GRCh37	14	95584074	95584074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064934-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			271	61	427	0	ENST00000343455.3:c.1394G>C	p.Gly465Ala	p.G465A	ENST00000343455	NM_177438.2	465	gGc/gCc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145596	11145596	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064934-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			270	65	581	0	ENST00000344626.4:c.3958G>T	p.Asp1320Tyr	p.D1320Y	ENST00000344626	NM_003072.3	1320	Gac/Tac																																																																															
ERF	2077	MSKCC	GRCh37	19	42753453	42753453	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064934-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	62	877	0	ENST00000222329.4:c.811A>T	p.Thr271Ser	p.T271S	ENST00000222329	NM_006494.2	271	Acg/Tcg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147503	47147503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064934-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			545	37	757	0	ENST00000409792.3:c.4823C>T	p.Ala1608Val	p.A1608V	ENST00000409792	NM_014159.6	1608	gCc/gTc																																																																															
REST	5978	MSKCC	GRCh37	4	57796970	57796970	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064934-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	71	866	0	ENST00000309042.7:c.1946A>T	p.Asp649Val	p.D649V	ENST00000309042	NM_005612.4	649	gAc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064944-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			225	354	682	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0064944-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			409	384	520	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117706977	117706977	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764959275		P-0064944-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			485	131	537	0	ENST00000368508.3:c.2173G>A	p.Asp725Asn	p.D725N	ENST00000368508	NM_002944.2	725	Gac/Aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259441	55259442	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0064944-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			395	388	467	1	ENST00000275493.2:c.2499_2500delinsTT	p.Leu833_Val834delinsPheLeu	p.L833_V834delinsFL	ENST00000275493	NM_005228.3	833	ttGGtg/ttTTtg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93969072	93969072	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0064944-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			426	107	509	0	ENST00000369303.4:c.1924G>T	p.Gly642Ter	p.G642*	ENST00000369303	NM_004440.3	642	Gga/Tga																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371842	55371842	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267607082		P-0064944-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	111	640	2	ENST00000297316.4:c.532G>A	p.Gly178Ser	p.G178S	ENST00000297316	NM_022454.3	178	Ggc/Agc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65349140	65349140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064944-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			256	231	519	0	ENST00000342505.4:c.25G>T	p.Asp9Tyr	p.D9Y	ENST00000342505	NM_002227.2	9	Gac/Tac																																																																															
CBL	867	MSKCC	GRCh37	11	119077263	119077263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064944-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1437	156	924	0	ENST00000264033.4:c.136C>T	p.His46Tyr	p.H46Y	ENST00000264033	NM_005188.3	46	Cac/Tac																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435153	18435153	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064944-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			260	131	555	0	ENST00000266497.5:c.138G>C	p.Glu46Asp	p.E46D	ENST00000266497		46	gaG/gaC																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495067	56495067	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064944-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1451	206	742	0	ENST00000267101.3:c.3424C>G	p.Pro1142Ala	p.P1142A	ENST00000267101	NM_001982.3	1142	Cct/Gct																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63973769	63973769	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064944-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			490	134	556	0	ENST00000295900.6:c.1130G>T	p.Gly377Val	p.G377V	ENST00000295900	NM_000333.3	377	gGt/gTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538248	187538248	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs752588652		P-0064944-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			350	124	513	0	ENST00000441802.2:c.8986A>G	p.Ile2996Val	p.I2996V	ENST00000441802	NM_005245.3	2996	Atc/Gtc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545627	106545628	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0064944-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			463	261	576	1	ENST00000359195.3:c.3104_3105delinsCT	p.Leu1035Pro	p.L1035P	ENST00000359195	NM_002649.2	1035	cTG/cCT																																																																															
SMO	6608	MSKCC	GRCh37	7	128848609	128848610	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0064944-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			602	114	535	0	ENST00000249373.3:c.1276_1277del	p.Leu426ValfsTer13	p.L426Vfs*13	ENST00000249373	NM_005631.4	425	aCT/a																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412204	139412204	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1448146225		P-0065081-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			484	106	450	0	ENST00000277541.6:c.1441G>A	p.Gly481Ser	p.G481S	ENST00000277541	NM_017617.3	481	Ggc/Agc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86648999	86648999	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065081-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	49	215	0	ENST00000274376.6:c.1279C>T	p.Arg427Ter	p.R427*	ENST00000274376	NM_002890.2	427	Cga/Tga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679216	88679216	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs187007070		P-0065081-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			391	166	402	0	ENST00000360948.2:c.821C>T	p.Thr274Met	p.T274M	ENST00000360948	NM_001012338.2	274	aCg/aTg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098956	178098956	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065081-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			463	135	361	0	ENST00000397062.3:c.89T>G	p.Leu30Arg	p.L30R	ENST00000397062	NM_006164.4	30	cTt/cGt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1952883	1952883	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065081-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			466	112	426	0	ENST00000382895.3:c.1966A>G	p.Lys656Glu	p.K656E	ENST00000382895	NM_133330.2	656	Aaa/Gaa																																																																															
HGF	3082	MSKCC	GRCh37	7	81372780	81372780	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065081-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			448	74	349	0	ENST00000222390.5:c.754G>T	p.Asp252Tyr	p.D252Y	ENST00000222390	NM_000601.4	252	Gac/Tac																																																																															
JAK3	3718	MSKCC	GRCh37	19	17937565	17937565	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065081-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			536	93	427	0	ENST00000458235.1:c.3362T>C	p.Leu1121Pro	p.L1121P	ENST00000458235	NM_000215.3	1121	cTg/cCg																																																																															
GAB1	2549	MSKCC	GRCh37	4	144390287	144390287	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0065081-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			478	148	400	0	ENST00000262994.4:c.2030G>A	p.Trp677Ter	p.W677*	ENST00000262994	NM_002039.3	677	tGg/tAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151849975	151849975	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065081-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			647	107	478	0	ENST00000262189.6:c.12341A>G	p.Glu4114Gly	p.E4114G	ENST00000262189	NM_170606.2	4114	gAg/gGg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0065419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	43	535	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39647351	39647351	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0065419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	49	399	0	ENST00000262039.4:c.2524-1G>T		p.X842_splice	ENST00000262039	NM_002647.2	842																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0065419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	57	297	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
NF1	4763	MSKCC	GRCh37	17	29546122	29546122	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs894292181		P-0065419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	27	471	0	ENST00000358273.4:c.1627C>T	p.Gln543Ter	p.Q543*	ENST00000358273	NM_001042492.2	543	Cag/Tag																																																																															
RET	5979	MSKCC	GRCh37	10	43600481	43600481	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	40	665	0	ENST00000355710.3:c.707A>C	p.Lys236Thr	p.K236T	ENST00000355710	NM_020975.4	236	aAg/aCg																																																																															
MSI1	4440	MSKCC	GRCh37	12	120794714	120794714	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	103	550	0	ENST00000257552.2:c.643G>T	p.Gly215Cys	p.G215C	ENST00000257552	NM_002442.3	215	Ggc/Tgc																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51504611	51504611	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0065419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	32	551	0	ENST00000260433.2:c.1169A>C	p.Lys390Thr	p.K390T	ENST00000260433		390	aAg/aCg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576217	88576217	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	33	543	0	ENST00000360948.2:c.1456C>A	p.His486Asn	p.H486N	ENST00000360948	NM_001012338.2	486	Cac/Aac																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7980345	7980345	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	40	661	0	ENST00000319144.4:c.1238del	p.Leu413CysfsTer2	p.L413Cfs*2	ENST00000319144	NM_001139.2	413	tTg/tg																																																																															
NF1	4763	MSKCC	GRCh37	17	29653193	29653193	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	42	606	0	ENST00000358273.4:c.5192del	p.Leu1731TrpfsTer3	p.L1731Wfs*3	ENST00000358273	NM_001042492.2	1731	Ttg/tg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29095867	29095867	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs750984976		P-0065419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	50	417	0	ENST00000328354.6:c.967A>G	p.Thr323Ala	p.T323A	ENST00000328354	NM_007194.3	323	Acc/Gcc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673467	30673467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	46	664	0	ENST00000376406.3:c.3493G>A	p.Ala1165Thr	p.A1165T	ENST00000376406	NM_014641.2	1165	Gcc/Acc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465532	8465532	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065419-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	31	467	0	ENST00000356435.5:c.3648C>G	p.Asn1216Lys	p.N1216K	ENST00000356435		1216	aaC/aaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0065554-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	156	631	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T	rs886039483		P-0065557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	88	459	0	ENST00000269305.4:c.376T>A	p.Tyr126Asn	p.Y126N	ENST00000269305	NM_001126112.2	126	Tac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0065557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	23	273	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044895	47044895	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065557-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			878	98	639	0	ENST00000329236.7:c.1987G>T	p.Glu663Ter	p.E663*	ENST00000329236	NM_001204466.1	663	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0065664-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	101	551	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065664-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	114	551	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6213991	6213991	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs898531747		P-0065664-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	33	561	0	ENST00000252674.7:c.1366G>A	p.Glu456Lys	p.E456K	ENST00000252674	NM_005934.3	456	Gag/Aag																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6214030	6214030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065664-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	30	539	1	ENST00000252674.7:c.1327G>A	p.Glu443Lys	p.E443K	ENST00000252674	NM_005934.3	443	Gag/Aag																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6214046	6214046	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065664-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	30	528	0	ENST00000252674.7:c.1311G>C	p.Leu437Phe	p.L437F	ENST00000252674	NM_005934.3	437	ttG/ttC																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31372604	31372604	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065664-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	40	561	0	ENST00000328111.2:c.245C>G	p.Ser82Cys	p.S82C	ENST00000328111	NM_006892.3	82	tCt/tGt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188386	32188386	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065664-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			850	57	807	0	ENST00000375023.3:c.955G>C	p.Glu319Gln	p.E319Q	ENST00000375023	NM_004557.3	319	Gag/Cag																																																																															
SESN1	27244	MSKCC	GRCh37	6	109312032	109312032	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065664-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	82	394	0	ENST00000436639.2:c.1240T>A	p.Cys414Ser	p.C414S	ENST00000436639	NM_014454.2	414	Tgc/Agc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419986	41419986	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372989163		P-0065665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			903	222	543	0	ENST00000373198.4:c.335G>A	p.Arg112His	p.R112H	ENST00000373198	NM_133170.3	112	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0065665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	426	467	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0065665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	107	216	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0065665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	161	375	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0065665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	321	289	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672347	86672347	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	208	359	0	ENST00000274376.6:c.2149A>T	p.Ile717Phe	p.I717F	ENST00000274376	NM_002890.2	717	Atc/Ttc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114799877	114799878	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0065665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	157	325	0	ENST00000543371.1:c.545dup	p.His182GlnfsTer5	p.H182Qfs*5	ENST00000543371	NM_001198531.1	182	cac/cAac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114905841	114905841	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	217	384	0	ENST00000543371.1:c.860A>G	p.Asn287Ser	p.N287S	ENST00000543371	NM_001198531.1	287	aAt/aGt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32918790	32918790	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0065665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	109	244	0	ENST00000380152.3:c.6937G>A	p.Gly2313Ser	p.G2313S	ENST00000380152		2313	Ggc/Agc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672254	86672254	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065665-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	235	434	0	ENST00000274376.6:c.2056A>G	p.Thr686Ala	p.T686A	ENST00000274376	NM_002890.2	686	Aca/Gca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0065676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	135	426	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78854237	78854237	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	147	548	0	ENST00000306801.3:c.1532A>G	p.Lys511Arg	p.K511R	ENST00000306801	NM_020761.2	511	aAg/aGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0065731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	179	366	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0065731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	219	434	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248749	212248749	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	105	447	1	ENST00000342788.4:c.3518C>A	p.Ser1173Tyr	p.S1173Y	ENST00000342788	NM_005235.2	1173	tCt/tAt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88659859	88659859	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	35	239	0	ENST00000372037.3:c.506T>A	p.Ile169Asn	p.I169N	ENST00000372037	NM_004329.2	169	aTc/aAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906618	32906618	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	217	422	0	ENST00000380152.3:c.1003G>T	p.Glu335Ter	p.E335*	ENST00000380152		335	Gaa/Taa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492737	56492743	+	frameshift_variant	Frame_Shift_Del	DEL	CACCTTC	CACCTTC	-			P-0065731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	190	476	0	ENST00000407977.2:c.196_202del	p.Glu66CysfsTer8	p.E66Cfs*8	ENST00000407977		66	GAAGGTGtg/tg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0065734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	108	586	0	ENST00000324856.7:c.3977dup	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551522	150551522	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			756	82	541	0	ENST00000369026.2:c.485C>G	p.Ser162Trp	p.S162W	ENST00000369026	NM_021960.4	162	tCg/tGg																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66522054	66522054	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0065734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	57	291	0	ENST00000358598.2:c.708+1G>A		p.X236_splice	ENST00000358598	NM_212471.2	236																																																																																
TP53	7157	MSKCC	GRCh37	17	7574027	7574027	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882028		P-0065734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	83	349	0	ENST00000269305.4:c.1000G>T	p.Gly334Trp	p.G334W	ENST00000269305	NM_001126112.2	334	Ggg/Tgg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72163744	72163744	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	37	371	0	ENST00000357731.5:c.614C>A	p.Ala205Glu	p.A205E	ENST00000357731	NM_173808.2	205	gCg/gAg																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898320	63898320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	51	217	0	ENST00000295900.6:c.46G>T	p.Ala16Ser	p.A16S	ENST00000295900	NM_000333.3	16	Gcg/Tcg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241907	72241907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	80	396	0	ENST00000357731.5:c.483G>T	p.Leu161Phe	p.L161F	ENST00000357731	NM_173808.2	161	ttG/ttT																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163824	152163824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	66	387	1	ENST00000206249.3:c.545C>A	p.Thr182Asn	p.T182N	ENST00000206249	NM_000125.3	182	aCt/aAt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467931	50467931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	68	534	0	ENST00000331340.3:c.1166C>T	p.Ser389Phe	p.S389F	ENST00000331340	NM_006060.4	389	tCc/tTc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246498742	246498742	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	113	290	0	ENST00000388985.4:c.263A>G	p.Lys88Arg	p.K88R	ENST00000388985		88	aAa/aGa																																																																															
SESN1	27244	MSKCC	GRCh37	6	109415178	109415178	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	74	446	0	ENST00000436639.2:c.99G>C	p.Leu33Phe	p.L33F	ENST00000436639	NM_014454.2	33	ttG/ttC																																																																															
RET	5979	MSKCC	GRCh37	10	43607550	43607550	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065734-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			805	117	775	0	ENST00000355710.3:c.1526T>A	p.Val509Glu	p.V509E	ENST00000355710	NM_020975.4	509	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0065735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	123	378	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0065735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	94	278	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BLM	641	MSKCC	GRCh37	15	91328309	91328309	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0065735-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	93	281	0	ENST00000355112.3:c.2821C>T	p.Gln941Ter	p.Q941*	ENST00000355112	NM_000057.2	941	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0063880-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			707	145	423	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0063880-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			456	44	339	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362446	40362447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1202978138		P-0063880-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			744	49	393	1	ENST00000293328.3:c.1749dup	p.His584ThrfsTer8	p.H584Tfs*8	ENST00000293328	NM_012448.3	583	-/A																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25994397	25994397	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757065305		P-0063880-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			762	60	395	0	ENST00000435504.4:c.416C>T	p.Ser139Phe	p.S139F	ENST00000435504		139	tCc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0063880-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	32	284	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428199	49428201	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0063880-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1031	129	584	0	ENST00000301067.7:c.10499_10501del	p.Gly3500del	p.G3500del	ENST00000301067	NM_003482.3	3500	gGAGtg/gtg																																																																															
REST	5978	MSKCC	GRCh37	4	57797899	57797899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063880-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			578	36	401	0	ENST00000309042.7:c.2875C>T	p.Leu959Phe	p.L959F	ENST00000309042	NM_005612.4	959	Ctc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0064773-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	220	382	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0064773-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	265	286	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100298	27100299	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0064773-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	283	548	2	ENST00000324856.7:c.4012dup	p.Ser1338PhefsTer107	p.S1338Ffs*107	ENST00000324856	NM_006015.4	1337	gat/gaTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438210	49438210	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1361870384		P-0064773-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	228	439	0	ENST00000301067.7:c.5059C>T	p.Arg1687Cys	p.R1687C	ENST00000301067	NM_003482.3	1687	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0065032-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			479	381	363	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430515	181430515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065032-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			675	225	354	0	ENST00000325404.1:c.367G>A	p.Asp123Asn	p.D123N	ENST00000325404	NM_003106.3	123	Gat/Aat																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435288	110435288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065032-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			975	140	432	0	ENST00000375856.3:c.3113C>T	p.Pro1038Leu	p.P1038L	ENST00000375856	NM_003749.2	1038	cCg/cTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476286	88476286	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065032-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			461	100	296	0	ENST00000360948.2:c.1846G>T	p.Val616Phe	p.V616F	ENST00000360948	NM_001012338.2	616	Gtc/Ttc																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150921660	150921660	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065032-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			536	277	307	0	ENST00000271640.5:c.1330C>T	p.Gln444Ter	p.Q444*	ENST00000271640	NM_001145415.1	444	Cag/Tag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	459820	459820	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065032-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			763	89	296	0	ENST00000399788.2:c.1275G>T	p.Lys425Asn	p.K425N	ENST00000399788	NM_001042603.1	425	aaG/aaT																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858489	9858489	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065032-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			589	118	322	0	ENST00000330684.3:c.2912A>G	p.Gln971Arg	p.Q971R	ENST00000330684	NM_001134407.1	971	cAg/cGg																																																																															
NF1	4763	MSKCC	GRCh37	17	29653214	29653214	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0065032-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			563	368	334	0	ENST00000358273.4:c.5212A>T	p.Lys1738Ter	p.K1738*	ENST00000358273	NM_001042492.2	1738	Aag/Tag																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445216	29445217	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0065032-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	220	368	1	ENST00000544604.2:c.1047_1048delinsTT	p.Glu350Ter	p.E350*	ENST00000544604	NM_001206998.1	349	gtGGag/gtTTag																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436415	52436415	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065032-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			461	249	330	0	ENST00000460680.1:c.2079G>T	p.Glu693Asp	p.E693D	ENST00000460680	NM_004656.3	693	gaG/gaT																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204938	128204938	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065032-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			556	219	353	0	ENST00000341105.2:c.503C>G	p.Ser168Cys	p.S168C	ENST00000341105	NM_032638.4	168	tCc/tGc																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182681702	182681702	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065032-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			519	192	233	0	ENST00000292782.4:c.356A>T	p.Lys119Ile	p.K119I	ENST00000292782	NM_020640.2	119	aAa/aTa																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505338	186505338	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065032-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			564	216	278	0	ENST00000323963.5:c.964G>T	p.Gly322Trp	p.G322W	ENST00000323963		322	Ggg/Tgg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673405	30673405	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065032-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1290	393	445	0	ENST00000376406.3:c.3555G>T	p.Gln1185His	p.Q1185H	ENST00000376406	NM_014641.2	1185	caG/caT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93964481	93964481	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065032-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			340	227	282	0	ENST00000369303.4:c.2416G>T	p.Glu806Ter	p.E806*	ENST00000369303	NM_004440.3	806	Gaa/Taa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93964515	93964515	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0065032-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			272	174	210	0	ENST00000369303.4:c.2383-1G>T		p.X795_splice	ENST00000369303	NM_004440.3	795																																																																																
NBN	4683	MSKCC	GRCh37	8	90976731	90976731	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065032-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			312	113	218	0	ENST00000265433.3:c.901G>C	p.Gly301Arg	p.G301R	ENST00000265433	NM_002485.4	301	Ggt/Cgt																																																																															
ABL1	25	MSKCC	GRCh37	9	133760526	133760526	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065032-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			863	132	322	0	ENST00000318560.5:c.2849A>T	p.Gln950Leu	p.Q950L	ENST00000318560	NM_005157.4	950	cAg/cTg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426661	47426661	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065032-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			596	122	371	0	ENST00000377045.4:c.906C>A	p.Tyr302Ter	p.Y302*	ENST00000377045	NM_001654.4	302	taC/taA																																																																															
ATRX	546	MSKCC	GRCh37	X	76939018	76939022	+	frameshift_variant	Frame_Shift_Del	DEL	TTTGA	TTTGA	-			P-0065032-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			374	147	290	0	ENST00000373344.5:c.1726_1730del	p.Ser576AsnfsTer4	p.S576Nfs*4	ENST00000373344	NM_000489.3	576	TCAAAa/a																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0065527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	604	509	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0065527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	490	597	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231345	5231345	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765642813		P-0065527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	235	614	2	ENST00000357368.4:c.2131G>A	p.Val711Met	p.V711M	ENST00000357368	NM_002850.3	711	Gtg/Atg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56401599	56401600	+	missense_variant	Missense_Mutation	DNP	GT	GT	TG			P-0065527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	170	430	0	ENST00000348428.3:c.1461_1462delinsTG	p.Phe488Val	p.F488V	ENST00000348428	NM_006785.3	487	gtGTtt/gtTGtt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719571	61719571	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	159	304	0	ENST00000401558.2:c.1612G>C	p.Ala538Pro	p.A538P	ENST00000401558	NM_003400.3	538	Gct/Cct																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31493367	31493367	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	176	391	0	ENST00000344624.3:c.1789C>A	p.His597Asn	p.H597N	ENST00000344624		597	Cac/Aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0065574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	166	408	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260223	19260223	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767499551		P-0065574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	56	420	0	ENST00000162023.5:c.70C>T	p.Arg24Trp	p.R24W	ENST00000162023		24	Cgg/Tgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190825	32190825	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779661107		P-0065574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	95	453	0	ENST00000375023.3:c.112G>A	p.Gly38Arg	p.G38R	ENST00000375023	NM_004557.3	38	Gga/Aga																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39575950	39575950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	35	341	0	ENST00000262039.4:c.883C>A	p.Gln295Lys	p.Q295K	ENST00000262039	NM_002647.2	295	Cag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628058	187628058	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	43	458	0	ENST00000441802.2:c.2924A>G	p.Asp975Gly	p.D975G	ENST00000441802	NM_005245.3	975	gAt/gGt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2958196	2958196	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	125	395	0	ENST00000396946.4:c.2536C>A	p.Leu846Met	p.L846M	ENST00000396946	NM_032415.4	846	Ctg/Atg																																																																															
KDR	3791	MSKCC	GRCh37	4	55972904	55972906	+	frameshift_variant	Frame_Shift_Del	DEL	TAT	TAT	AA			P-0065574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	31	331	0	ENST00000263923.4:c.1484_1486delinsTT	p.Asn495IlefsTer12	p.N495Ifs*12	ENST00000263923	NM_002253.2	495	aATAaa/aTTaa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23619275	23619275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			64	369	348	0	ENST00000261584.4:c.3260G>A	p.Ser1087Asn	p.S1087N	ENST00000261584	NM_024675.3	1087	aGc/aAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829228	72829228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	220	462	0	ENST00000268489.5:c.7353G>T	p.Lys2451Asn	p.K2451N	ENST00000268489	NM_006885.3	2451	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577581	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0065576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	461	374	0	ENST00000269305.4:c.700_701del	p.Tyr234GlnfsTer5	p.Y234Qfs*5	ENST00000269305	NM_001126112.2	234	TAc/c																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738236	145738236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			984	248	527	0	ENST00000428558.2:c.2749G>A	p.Glu917Lys	p.E917K	ENST00000428558	NM_004260.3	917	Gag/Aag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738720	145738720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1079	277	649	1	ENST00000428558.2:c.2344G>C	p.Asp782His	p.D782H	ENST00000428558	NM_004260.3	782	Gat/Cat																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2060822	2060822	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	93	396	0	ENST00000349721.2:c.1528G>C	p.Asp510His	p.D510H	ENST00000349721	NM_003070.3	510	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578507	7578507	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519977		P-0065637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			877	69	652	0	ENST00000269305.4:c.423C>G	p.Cys141Trp	p.C141W	ENST00000269305	NM_001126112.2	141	tgC/tgG																																																																															
ATRX	546	MSKCC	GRCh37	X	76888847	76888847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	35	234	0	ENST00000373344.5:c.4982G>A	p.Arg1661His	p.R1661H	ENST00000373344	NM_000489.3	1661	cGt/cAt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119763	70119763	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	47	429	0	ENST00000245479.2:c.768del	p.Arg257AlafsTer22	p.R257Afs*22	ENST00000245479	NM_000346.3	255	gaG/ga																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84406195	84406195	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	49	411	0	ENST00000321945.7:c.31T>A	p.Ser11Thr	p.S11T	ENST00000321945	NM_139076.2	11	Tcg/Acg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243801031	243801031	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	24	324	0	ENST00000263826.5:c.443T>A	p.Phe148Tyr	p.F148Y	ENST00000263826	NM_005465.4	148	tTt/tAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427932	49427932	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	58	662	0	ENST00000301067.7:c.10658G>T	p.Gly3553Val	p.G3553V	ENST00000301067	NM_003482.3	3553	gGc/gTc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805063	89805063	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			776	78	666	0	ENST00000389301.3:c.4314C>A	p.Ser1438Arg	p.S1438R	ENST00000389301	NM_000135.2	1438	agC/agA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577067	7578089	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCGGAGATTCTCTTCCTCTGTGCGCCGGTCTCTCCCAGGACAGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCACTACTCAGGATAGGAAAAGAGAAGCAAGAGGCAGTAAGGAAATCAGGTCCTACCTGTCCCATTTAAAAAACCAGGCTCCATCTACTCCCAACCACCCTTGTCCTTTCTGGAGCCTAAGCTCCAGCTCCAGGTAGGTGGAGGAGAAGCCACAGGTTAAGAGGTCCCAAAGCCAGAGAAAAGAAAACTGAGTGGGAGCAGTAAGGAGATTCCCCGCCGGGGATGTGATGAGAGGTGGATGGGTAGTAGTATGGAAGAAATCGGTAAGAGGTGGGCCCAGGGGTCAGAGGCAAGCAGAGGCTGGGGCACAGCAGGCCAGTGTGCAGGGTGGCAAGTGGCTCCTGACCTGGAGTCTTCCAGTGTGATGATGGTGAGGATGGGCCTCCGGTTCATGCCGCCCATGCAGGAACTGTTACACATGTAGTTGTAGTGGATGGTGGTACAGTCAGAGCCAACCTAGGAGATAACACAGGCCCAAGATGAGGCCAGTGCGCCTTGGGGAGACCTGTGGCAAGCAGGGGAGGCCTTTTTTTTTTTTTTTTGAGATGGAATCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAAGCTCCACCGCCCAGGTTCACGCCATTCTCCTTCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCAGCACCACGCCCGGCTAATTTTTTTTTGTATTTTTCAGTAGAGACGGGGTTTCACCGTTAGCCAGGATGGTCTCGATCTCCCAACCTCGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCCAGCCAAGCAGGGGAGGCCCTTAGCCTCTGTAAGCTTCAGTTTTTTCAACTGTGCAATAGTTAAACCCATTTACTTTGCACATCTCATGGGGTTATAGGGAGGTCAAATAAGCAGCA	TGCGGAGATTCTCTTCCTCTGTGCGCCGGTCTCTCCCAGGACAGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCACTACTCAGGATAGGAAAAGAGAAGCAAGAGGCAGTAAGGAAATCAGGTCCTACCTGTCCCATTTAAAAAACCAGGCTCCATCTACTCCCAACCACCCTTGTCCTTTCTGGAGCCTAAGCTCCAGCTCCAGGTAGGTGGAGGAGAAGCCACAGGTTAAGAGGTCCCAAAGCCAGAGAAAAGAAAACTGAGTGGGAGCAGTAAGGAGATTCCCCGCCGGGGATGTGATGAGAGGTGGATGGGTAGTAGTATGGAAGAAATCGGTAAGAGGTGGGCCCAGGGGTCAGAGGCAAGCAGAGGCTGGGGCACAGCAGGCCAGTGTGCAGGGTGGCAAGTGGCTCCTGACCTGGAGTCTTCCAGTGTGATGATGGTGAGGATGGGCCTCCGGTTCATGCCGCCCATGCAGGAACTGTTACACATGTAGTTGTAGTGGATGGTGGTACAGTCAGAGCCAACCTAGGAGATAACACAGGCCCAAGATGAGGCCAGTGCGCCTTGGGGAGACCTGTGGCAAGCAGGGGAGGCCTTTTTTTTTTTTTTTTGAGATGGAATCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAAGCTCCACCGCCCAGGTTCACGCCATTCTCCTTCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCAGCACCACGCCCGGCTAATTTTTTTTTGTATTTTTCAGTAGAGACGGGGTTTCACCGTTAGCCAGGATGGTCTCGATCTCCCAACCTCGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCCAGCCAAGCAGGGGAGGCCCTTAGCCTCTGTAAGCTTCAGTTTTTTCAACTGTGCAATAGTTAAACCCATTTACTTTGCACATCTCATGGGGTTATAGGGAGGTCAAATAAGCAGCA	-			P-0065640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			742	76	608	0	ENST00000269305.4:c.672+88_871del		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
RPTOR	57521	MSKCC	GRCh37	17	78831616	78831617	+	missense_variant	Missense_Mutation	DNP	CG	CG	TT			P-0065640-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	88	603	0	ENST00000306801.3:c.1425_1426delinsTT	p.Val476Leu	p.V476L	ENST00000306801	NM_020761.2	475	taCGtg/taTTtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0065641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	691	557	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434581	99434581	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1461059080		P-0065641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	365	602	3	ENST00000268035.6:c.668C>T	p.Ala223Val	p.A223V	ENST00000268035	NM_000875.3	223	gCg/gTg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798442	45798442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	365	731	0	ENST00000372115.3:c.527C>T	p.Ala176Val	p.A176V	ENST00000372115	NM_001048171.1	176	gCt/gTt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111473	8111473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	401	568	0	ENST00000346208.3:c.959G>A	p.Cys320Tyr	p.C320Y	ENST00000346208		320	tGt/tAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32945135	32945136	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0065641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			64	238	435	0	ENST00000380152.3:c.8533dup	p.Arg2845LysfsTer24	p.R2845Kfs*24	ENST00000380152		2844	gaa/gAaa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245287	41245287	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	330	579	0	ENST00000357654.3:c.2261G>T	p.Gly754Val	p.G754V	ENST00000357654	NM_007294.3	754	gGa/gTa																																																																															
TP63	8626	MSKCC	GRCh37	3	189590786	189590786	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0065641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			723	440	521	0	ENST00000264731.3:c.1349+2T>C		p.X450_splice	ENST00000264731	NM_003722.4	450																																																																																
HIST1H1C	3006	MSKCC	GRCh37	6	26056490	26056490	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs138831824		P-0065641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	368	557	0	ENST00000343677.2:c.167G>C	p.Gly56Ala	p.G56A	ENST00000343677	NM_005319.3	56	gGa/gCa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400230	139400230	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065641-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	736	635	0	ENST00000277541.6:c.4118T>A	p.Leu1373Gln	p.L1373Q	ENST00000277541	NM_017617.3	1373	cTg/cAg																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0062122-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			396	51	109	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52693404	52693404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062122-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			579	52	201	0	ENST00000322088.6:c.55G>A	p.Glu19Lys	p.E19K	ENST00000322088	NM_014225.5	19	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs267605076		P-0062122-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			647	39	192	0	ENST00000269305.4:c.672G>T	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602293	10602293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062122-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			622	43	220	0	ENST00000171111.5:c.1285G>T	p.Gly429Cys	p.G429C	ENST00000171111	NM_203500.1	429	Ggc/Tgc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2191101	2191101	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062122-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			628	49	174	0	ENST00000398665.3:c.355G>T	p.Val119Leu	p.V119L	ENST00000398665	NM_032482.2	119	Gtg/Ttg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225360594	225360594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062122-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			472	31	125	0	ENST00000264414.4:c.1797G>T	p.Met599Ile	p.M599I	ENST00000264414	NM_003590.4	599	atG/atT																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798129	45798129	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062122-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			704	98	207	0	ENST00000372115.3:c.680G>T	p.Arg227Leu	p.R227L	ENST00000372115	NM_001048171.1	227	cGg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425401	49425401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062122-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			682	59	210	0	ENST00000301067.7:c.13087G>T	p.Ala4363Ser	p.A4363S	ENST00000301067	NM_003482.3	4363	Gcc/Tcc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240228	41240228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062122-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			429	23	106	0	ENST00000379561.5:c.122G>T	p.Ser41Ile	p.S41I	ENST00000379561	NM_002015.3	41	aGc/aTc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67662284	67662284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062122-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			554	36	164	0	ENST00000264010.4:c.1530G>A	p.Met510Ile	p.M510I	ENST00000264010	NM_006565.3	510	atG/atA																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52613140	52613140	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062122-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			574	42	180	0	ENST00000394830.3:c.3388G>C	p.Asp1130His	p.D1130H	ENST00000394830	NM_018313.4	1130	Gac/Cac																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048674	180048674	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062122-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			654	49	191	0	ENST00000261937.6:c.1888G>T	p.Gly630Trp	p.G630W	ENST00000261937	NM_182925.4	630	Ggg/Tgg																																																																															
NBN	4683	MSKCC	GRCh37	8	90994961	90994961	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062122-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	34	103	0	ENST00000265433.3:c.160G>T	p.Val54Leu	p.V54L	ENST00000265433	NM_002485.4	54	Gta/Tta																																																																															
ARAF	369	MSKCC	GRCh37	X	47429027	47429028	+	missense_variant	Missense_Mutation	DNP	GA	GA	AG			P-0062122-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			572	48	211	0	ENST00000377045.4:c.1390_1391delinsAG	p.Glu464Arg	p.E464R	ENST00000377045	NM_001654.4	464	GAg/AGg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410786	63410786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062122-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			611	34	198	0	ENST00000330258.3:c.2381C>T	p.Ser794Leu	p.S794L	ENST00000330258	NM_152424.3	794	tCa/tTa																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0062609-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			321	92	269	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63845622	63845622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0062609-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			544	94	401	0	ENST00000279873.7:c.1365del	p.Glu456LysfsTer23	p.E456Kfs*23	ENST00000279873	NM_032199.2	454	gAa/ga																																																																															
ATM	472	MSKCC	GRCh37	11	108214093	108214095	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0062609-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			407	119	341	0	ENST00000278616.4:c.8416_8418del	p.Met2806del	p.M2806del	ENST00000278616	NM_000051.3	2805	ATG/-																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991971	72991972	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGAA			P-0062609-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			482	52	384	0	ENST00000268489.5:c.2073_2074insTTCA	p.Glu692PhefsTer42	p.E692Ffs*42	ENST00000268489	NM_006885.3	691	-/TTCA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0063944-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			126	29	171	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0063944-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			332	21	498	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0063944-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	67	349	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0063944-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			237	485	360	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
NF1	4763	MSKCC	GRCh37	17	29557315	29557315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0063944-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			184	29	292	0	ENST00000358273.4:c.3028C>T	p.Gln1010Ter	p.Q1010*	ENST00000358273	NM_001042492.2	1010	Caa/Taa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176720917	176720917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063944-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	43	380	0	ENST00000439151.2:c.6548G>A	p.Cys2183Tyr	p.C2183Y	ENST00000439151	NM_022455.4	2183	tGt/tAt																																																																															
CD274	29126	MSKCC	GRCh37	9	5466784	5466784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063944-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			220	67	403	0	ENST00000381577.3:c.805G>A	p.Val269Met	p.V269M	ENST00000381577	NM_014143.3	269	Gtg/Atg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039817	47039817	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0063944-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			75	49	146	0	ENST00000329236.7:c.928del		p.X310_splice	ENST00000329236	NM_001204466.1	310																																																																																
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0065562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	43	217	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061264	38061264	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	63	418	0	ENST00000250448.2:c.725C>G	p.Ser242Cys	p.S242C	ENST00000250448	NM_004496.3	242	tCc/tGc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061261	38061261	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0065562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	66	413	0	ENST00000250448.2:c.728A>C	p.Tyr243Ser	p.Y243S	ENST00000250448	NM_004496.3	243	tAc/tCc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692920	89692921	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1165002999		P-0065562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	38	315	0	ENST00000371953.3:c.405dup	p.Cys136MetfsTer44	p.C136Mfs*44	ENST00000371953	NM_000314.4	135	ata/atAa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437617	52437618	+	missense_variant	Missense_Mutation	DNP	TT	TT	GG			P-0065562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	18	424	1	ENST00000460680.1:c.1543_1544delinsCC	p.Asn515Pro	p.N515P	ENST00000460680	NM_004656.3	515	AAc/CCc																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627359	14627359	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	23	407	0	ENST00000254322.2:c.711del	p.Phe237LeufsTer3	p.F237Lfs*3	ENST00000254322	NM_006145.1	237	ttT/tt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863382	57863382	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	154	498	0	ENST00000228682.2:c.1477T>A	p.Ser493Thr	p.S493T	ENST00000228682	NM_005269.2	493	Tcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	113	240	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	176	393	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108168020	108168020	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752459491		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	34	230	0	ENST00000278616.4:c.4916C>T	p.Pro1639Leu	p.P1639L	ENST00000278616	NM_000051.3	1639	cCg/cTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	147	477	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	104	179	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	56	369	5	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	52	455	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220336	5220336	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754772522		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	123	355	0	ENST00000357368.4:c.3484C>T	p.Arg1162Cys	p.R1162C	ENST00000357368	NM_002850.3	1162	Cgc/Tgc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247373	153247373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	160	332	0	ENST00000281708.4:c.1429G>A	p.Gly477Ser	p.G477S	ENST00000281708	NM_033632.3	477	Ggt/Agt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	46	393	0	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	143	329	5	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	136	294	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245449	153245449	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	159	299	0	ENST00000281708.4:c.1742A>C	p.Gln581Pro	p.Q581P	ENST00000281708	NM_033632.3	581	cAg/cCg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185198027	185198027	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1184685567		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	148	307	0	ENST00000265026.3:c.2509C>T	p.Arg837Cys	p.R837C	ENST00000265026	NM_004721.4	837	Cgc/Tgc																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123504056	123504056	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1362460627		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	88	213	0	ENST00000371139.4:c.232C>T	p.Arg78Trp	p.R78W	ENST00000371139	NM_001114937.2	78	Cgg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735467	40735467	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776642212		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	122	357	0	ENST00000373198.4:c.3406C>T	p.Arg1136Cys	p.R1136C	ENST00000373198	NM_133170.3	1136	Cgt/Tgt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	140	339	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557725	21557725	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs915063122		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	44	389	0	ENST00000382592.4:c.2120G>A	p.Arg707Gln	p.R707Q	ENST00000382592	NM_014572.2	707	cGg/cAg																																																																															
RET	5979	MSKCC	GRCh37	10	43615538	43615538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	135	424	0	ENST00000355710.3:c.2617C>T	p.Arg873Trp	p.R873W	ENST00000355710	NM_020975.4	873	Cgg/Tgg																																																																															
TET2	54790	MSKCC	GRCh37	4	106156936	106156936	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs763386429		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	141	411	0	ENST00000380013.4:c.1842del	p.Leu615SerfsTer24	p.L615Sfs*24	ENST00000380013	NM_001127208.2	613	Ggg/gg																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733232	74733232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	51	374	0	ENST00000359995.5:c.11G>A	p.Gly4Asp	p.G4D	ENST00000359995	NM_001195427.1	4	gGc/gAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140501350	140501350	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906660		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	109	217	0	ENST00000288602.6:c.722C>T	p.Thr241Met	p.T241M	ENST00000288602	NM_004333.4	241	aCg/aTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157222582	157222582	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	156	451	0	ENST00000346085.5:c.1849C>T	p.Gln617Ter	p.Q617*	ENST00000346085	NM_020732.3	617	Cag/Tag																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222339	2222339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771191963		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	151	456	0	ENST00000326181.6:c.623G>A	p.Arg208Gln	p.R208Q	ENST00000326181	NM_032271.2	208	cGa/cAa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661395	227661396	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC	rs773978890		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	112	457	1	ENST00000305123.5:c.2057_2059dup	p.Ser686dup	p.S686dup	ENST00000305123	NM_005544.2	686	aac/aGCAac																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099468	157099470	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-	rs1429292576		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	156	451	0	ENST00000346085.5:c.413_415del	p.Asn138del	p.N138del	ENST00000346085	NM_020732.3	135	tcCAAc/tcc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027676	48027678	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs1377809071		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	136	333	0	ENST00000234420.5:c.2561_2563del	p.Lys854del	p.K854del	ENST00000234420	NM_000179.2	852	AAG/-																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905061	50905061	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	120	333	0	ENST00000440232.2:c.347del	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	115	Ccc/cc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112924316	112924316	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1420362815		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	167	316	0	ENST00000351677.2:c.1262G>A	p.Arg421Gln	p.R421Q	ENST00000351677	NM_002834.3	421	cGg/cAg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	55	388	3	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	113	261	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533790	63533790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	158	419	0	ENST00000307078.5:c.1364C>T	p.Pro455Leu	p.P455L	ENST00000307078	NM_004655.3	455	cCa/cTa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933823	39933823	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs727503826		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	153	456	0	ENST00000378444.4:c.776C>T	p.Ser259Leu	p.S259L	ENST00000378444	NM_001123385.1	259	tCg/tTg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	188	487	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
CDH1	999	MSKCC	GRCh37	16	68862139	68862139	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	159	355	0	ENST00000261769.5:c.2231del	p.Pro744GlnfsTer26	p.P744Qfs*26	ENST00000261769	NM_004360.3	743	Ccc/cc																																																																															
TEK	7010	MSKCC	GRCh37	9	27202925	27202925	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749958421		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	160	361	0	ENST00000380036.4:c.2017C>T	p.Arg673Cys	p.R673C	ENST00000380036	NM_000459.3	673	Cgt/Tgt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	157	448	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37050315	37050315	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	140	256	1	ENST00000231790.2:c.469del	p.Tyr157ThrfsTer3	p.Y157Tfs*3	ENST00000231790	NM_000249.3	155	cTt/ct																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031979	10031979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	145	362	0	ENST00000330684.3:c.844G>A	p.Asp282Asn	p.D282N	ENST00000330684	NM_001134407.1	282	Gat/Aat																																																																															
ABL1	25	MSKCC	GRCh37	9	133760598	133760598	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	165	486	0	ENST00000318560.5:c.2925del	p.Ile976SerfsTer93	p.I976Sfs*93	ENST00000318560	NM_005157.4	974	aCc/ac																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1977050	1977050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	58	333	0	ENST00000382895.3:c.3544G>A	p.Asp1182Asn	p.D1182N	ENST00000382895	NM_133330.2	1182	Gat/Aat																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992720	68992721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs774202059		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	103	305	5	ENST00000288368.4:c.1693dup	p.Ser565PhefsTer3	p.S565Ffs*3	ENST00000288368	NM_024870.2	562	cgt/cgTt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778282	3778282	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	130	456	0	ENST00000262367.5:c.6766del	p.Leu2256SerfsTer46	p.L2256Sfs*46	ENST00000262367	NM_004380.2	2256	Ctc/tc																																																																															
IRF4	3662	MSKCC	GRCh37	6	397217	397217	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753427028		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	191	403	0	ENST00000380956.4:c.602G>A	p.Arg201His	p.R201H	ENST00000380956	NM_001195286.1	201	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444933	49444933	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	39	444	0	ENST00000301067.7:c.2533del	p.Arg845GlyfsTer85	p.R845Gfs*85	ENST00000301067	NM_003482.3	845	Cgg/gg																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2647143	2647143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	131	271	0	ENST00000342085.4:c.1421G>A	p.Arg474Gln	p.R474Q	ENST00000342085	NM_002613.4	474	cGa/cAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214714	36214714	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	123	350	0	ENST00000222270.7:c.3145del	p.Ala1049ArgfsTer133	p.A1049Rfs*133	ENST00000222270	NM_014727.1	1047	cGg/cg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257889	19257889	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1482048547		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	183	478	0	ENST00000162023.5:c.497G>A	p.Arg166His	p.R166H	ENST00000162023		166	cGc/cAc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23632770	23632770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs180177131		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	32	268	0	ENST00000261584.4:c.3026del	p.Pro1009LeufsTer6	p.P1009Lfs*6	ENST00000261584	NM_024675.3	1009	cCt/ct																																																																															
MSH3	4437	MSKCC	GRCh37	5	80063767	80063769	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-	rs758193305		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	106	249	0	ENST00000265081.6:c.1917_1919del	p.Phe639del	p.F639del	ENST00000265081	NM_002439.4	638	TTC/-																																																																															
PRDM1	639	MSKCC	GRCh37	6	106543608	106543608	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	37	246	0	ENST00000369096.4:c.410G>T	p.Arg137Met	p.R137M	ENST00000369096	NM_001198.3	137	aGg/aTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467833	66467834	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	51	351	0	ENST00000273854.3:c.435dup	p.Thr146AspfsTer3	p.T146Dfs*3	ENST00000273854	NM_004439.5	145	-/G																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353818	15353819	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	32	182	1	ENST00000263377.2:c.3061dup	p.His1021ProfsTer72	p.H1021Pfs*72	ENST00000263377	NM_058243.2	1021	cat/cCat																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217650	7217653	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	106	378	0	ENST00000380728.2:c.274_277del	p.Lys92PhefsTer16	p.K92Ffs*16	ENST00000380728		92	AAAGtt/tt																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969968	161969968	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746215864		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	119	284	0	ENST00000366898.1:c.1001G>A	p.Arg334His	p.R334H	ENST00000366898	NM_004562.2	334	cGc/cAc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191097	185191097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200211552		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	165	421	0	ENST00000265026.3:c.1978G>A	p.Gly660Arg	p.G660R	ENST00000265026	NM_004721.4	660	Gga/Aga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37680973	37680973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs764290780		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	73	331	0	ENST00000447079.4:c.3142C>T	p.Arg1048Ter	p.R1048*	ENST00000447079	NM_015083.1	1048	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11307690	11307690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	130	289	0	ENST00000361445.4:c.1217C>T	p.Ala406Val	p.A406V	ENST00000361445	NM_004958.3	406	gCc/gTc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165857	118165857	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1476955055		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	183	410	0	ENST00000369448.3:c.367G>A	p.Gly123Ser	p.G123S	ENST00000369448	NM_017709.3	123	Ggt/Agt																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150933591	150933591	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149404089		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	42	343	1	ENST00000271640.5:c.3053G>A	p.Arg1018Gln	p.R1018Q	ENST00000271640	NM_001145415.1	1018	cGa/cAa																																																																															
TET1	80312	MSKCC	GRCh37	10	70451018	70451018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	156	464	0	ENST00000373644.4:c.5858C>T	p.Ala1953Val	p.A1953V	ENST00000373644	NM_030625.2	1953	gCc/gTc																																																																															
CTR9	9646	MSKCC	GRCh37	11	10785426	10785426	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	36	294	0	ENST00000361367.2:c.1194G>T	p.Lys398Asn	p.K398N	ENST00000361367	NM_014633.3	398	aaG/aaT																																																																															
SDHD	6392	MSKCC	GRCh37	11	111958580	111958580	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	40	225	0	ENST00000375549.3:c.53-1G>A		p.X18_splice	ENST00000375549	NM_003002.3	18																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49447922	49447922	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	121	364	2	ENST00000301067.7:c.512G>A	p.Arg171His	p.R171H	ENST00000301067	NM_003482.3	171	cGc/cAc																																																																															
KLF5	688	MSKCC	GRCh37	13	73636296	73636296	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			798	49	403	0	ENST00000377687.4:c.559C>A	p.Pro187Thr	p.P187T	ENST00000377687	NM_001730.3	187	Cct/Act																																																																															
CD276	80381	MSKCC	GRCh37	15	73994634	73994634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	38	464	0	ENST00000318443.5:c.118G>A	p.Ala40Thr	p.A40T	ENST00000318443	NM_001024736.1	40	Gca/Aca																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500394	99500394	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	63	437	0	ENST00000268035.6:c.3827A>C	p.Glu1276Ala	p.E1276A	ENST00000268035	NM_000875.3	1276	gAg/gCg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226366	2226366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	183	444	0	ENST00000326181.6:c.1979C>T	p.Ala660Val	p.A660V	ENST00000326181	NM_032271.2	660	gCt/gTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984852	72984852	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	131	354	0	ENST00000268489.5:c.2732T>A	p.Ile911Asn	p.I911N	ENST00000268489	NM_006885.3	911	aTc/aAc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372091	45372091	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	63	294	0	ENST00000262160.6:c.1078C>A	p.Pro360Thr	p.P360T	ENST00000262160	NM_005901.5	360	Ccc/Acc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593462	48593462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	62	365	0	ENST00000342988.3:c.1213C>T	p.His405Tyr	p.H405Y	ENST00000342988	NM_005359.5	405	Cac/Tac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096931	11096931	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060502073		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	76	431	0	ENST00000344626.4:c.422C>T	p.Ser141Leu	p.S141L	ENST00000344626	NM_003072.3	141	tCg/tTg																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626894	14626894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	199	406	0	ENST00000254322.2:c.881G>A	p.Arg294Gln	p.R294Q	ENST00000254322	NM_006145.1	294	cGg/cAg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376437	15376437	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202093296		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	124	347	0	ENST00000263377.2:c.577G>A	p.Val193Ile	p.V193I	ENST00000263377	NM_058243.2	193	Gtt/Att																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422062	47422062	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774121374		P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	192	380	0	ENST00000404338.3:c.130C>T	p.Arg44Cys	p.R44C	ENST00000404338	NM_004491.4	44	Cgc/Tgc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905131	50905131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	150	395	0	ENST00000440232.2:c.413G>A	p.Cys138Tyr	p.C138Y	ENST00000440232	NM_002691.3	138	tGc/tAc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265223	46265223	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	140	362	0	ENST00000371998.3:c.2093T>C	p.Val698Ala	p.V698A	ENST00000371998		698	gTa/gCa																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626659	12626659	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	154	440	0	ENST00000251849.4:c.1630G>T	p.Gly544Trp	p.G544W	ENST00000251849	NM_002880.3	544	Ggg/Tgg																																																																															
TP63	8626	MSKCC	GRCh37	3	189612242	189612242	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	146	357	0	ENST00000264731.3:c.1994T>C	p.Met665Thr	p.M665T	ENST00000264731	NM_003722.4	665	aTg/aCg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803222	1803222	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	173	453	0	ENST00000260795.2:c.574G>T	p.Gly192Cys	p.G192C	ENST00000260795		192	Ggc/Tgc																																																																															
ALB	213	MSKCC	GRCh37	4	74285257	74285257	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	61	285	0	ENST00000295897.4:c.1686G>T	p.Lys562Asn	p.K562N	ENST00000295897	NM_000477.5	562	aaG/aaT																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143181643	143181643	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	42	242	0	ENST00000262992.4:c.688+2T>C		p.X230_splice	ENST00000262992	NM_001101669.1	230																																																																																
RAD50	10111	MSKCC	GRCh37	5	131930596	131930597	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	105	203	0	ENST00000265335.6:c.1832_1833del	p.Ile611LysfsTer2	p.I611Kfs*2	ENST00000265335		610	cAT/c																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638326	176638326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	183	418	0	ENST00000439151.2:c.2926G>A	p.Ala976Thr	p.A976T	ENST00000439151	NM_022455.4	976	Gcc/Acc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672914	30672914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			802	228	585	0	ENST00000376406.3:c.4046G>A	p.Arg1349Gln	p.R1349Q	ENST00000376406	NM_014641.2	1349	cGg/cAg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805601	32805601	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	166	412	0	ENST00000374899.4:c.410T>C	p.Leu137Ser	p.L137S	ENST00000374899	NM_018833.2	137	tTg/tCg																																																																															
POT1	25913	MSKCC	GRCh37	7	124503576	124503576	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	133	343	1	ENST00000357628.3:c.374T>C	p.Phe125Ser	p.F125S	ENST00000357628	NM_015450.2	125	tTc/tCc																																																																															
TEK	7010	MSKCC	GRCh37	9	27197387	27197387	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	145	335	0	ENST00000380036.4:c.1699T>C	p.Phe567Leu	p.F567L	ENST00000380036	NM_000459.3	567	Ttt/Ctt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030517	47030517	+	intron_variant	Intron	SNP	C	C	T			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	145	404	0	ENST00000329236.7:c.201+1620C>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
ATRX	546	MSKCC	GRCh37	X	76888847	76888847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	145	301	0	ENST00000373344.5:c.4982G>A	p.Arg1661His	p.R1661H	ENST00000373344	NM_000489.3	1661	cGt/cAt																																																																															
XIAP	331	MSKCC	GRCh37	X	123025168	123025168	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0065565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	250	431	0	ENST00000355640.3:c.1056+2T>C		p.X352_splice	ENST00000355640		352																																																																																
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0050859-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			184	32	425	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260606	16260606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200512596		P-0050859-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			162	45	530	0	ENST00000375759.3:c.7871G>A	p.Arg2624Gln	p.R2624Q	ENST00000375759	NM_015001.2	2624	cGg/cAg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2084147	2084147	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050859-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			153	10	358	0	ENST00000349721.2:c.2477T>G	p.Leu826Arg	p.L826R	ENST00000349721	NM_003070.3	826	cTc/cGc																																																																															
APC	324	MSKCC	GRCh37	5	112175279	112175284	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CCTAGA	CCTAGA	TAGG			P-0050859-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			162	30	446	1	ENST00000257430.4:c.3988_3993delinsTAGG	p.Pro1330Ter	p.P1330*	ENST00000257430	NM_000038.5	1330	CCTAGA/TAGG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0064420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	165	430	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060853	38060859	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCCGT	AAGCCGT	-			P-0064420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	191	478	0	ENST00000250448.2:c.1130_1136del	p.His377ArgfsTer10	p.H377Rfs*10	ENST00000250448	NM_004496.3	377	cACGGCTTg/cg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953089	2953089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	400	578	0	ENST00000396946.4:c.2851G>A	p.Glu951Lys	p.E951K	ENST00000396946	NM_032415.4	951	Gag/Aag																																																																															
BARD1	580	MSKCC	GRCh37	2	215646225	215646225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	37	286	0	ENST00000260947.4:c.373G>C	p.Glu125Gln	p.E125Q	ENST00000260947	NM_000465.2	125	Gaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577157	7577157	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0065410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	292	453	0	ENST00000269305.4:c.783-2A>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
AR	367	MSKCC	GRCh37	X	66943551	66943551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	249	452	0	ENST00000374690.3:c.2631C>A	p.Phe877Leu	p.F877L	ENST00000374690	NM_000044.3	877	ttC/ttA																																																																															
AXL	558	MSKCC	GRCh37	19	41754651	41754651	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	181	556	0	ENST00000301178.4:c.1637A>T	p.Glu546Val	p.E546V	ENST00000301178	NM_021913.4	546	gAg/gTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925492	114925492	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs534110993		P-0065410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	167	482	2	ENST00000543371.1:c.1570G>A	p.Asp524Asn	p.D524N	ENST00000543371	NM_001198531.1	524	Gac/Aac																																																																															
CYLD	1540	MSKCC	GRCh37	16	50816365	50816365	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0065410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	162	366	0	ENST00000398568.2:c.1805C>G	p.Ser602Ter	p.S602*	ENST00000398568	NM_001042412.1	602	tCa/tGa																																																																															
MDM4	4194	MSKCC	GRCh37	1	204513697	204513697	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	192	415	0	ENST00000367182.3:c.707A>G	p.Asp236Gly	p.D236G	ENST00000367182	NM_001278516.1	236	gAt/gGt																																																																															
RET	5979	MSKCC	GRCh37	10	43622032	43622032	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			739	161	424	0	ENST00000355710.3:c.3049G>C	p.Asp1017His	p.D1017H	ENST00000355710	NM_020975.4	1017	Gac/Cac																																																																															
KDM5A	5927	MSKCC	GRCh37	12	472183	472183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	389	415	0	ENST00000399788.2:c.618G>T	p.Glu206Asp	p.E206D	ENST00000399788	NM_001042603.1	206	gaG/gaT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49419998	49419999	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0065410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	486	523	0	ENST00000301067.7:c.15750_15751delinsTT	p.Glu5251Ter	p.E5251*	ENST00000301067	NM_003482.3	5250	ctGGag/ctTTag																																																																															
CBFB	865	MSKCC	GRCh37	16	67070610	67070610	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	341	443	0	ENST00000412916.2:c.234del	p.Gln79LysfsTer10	p.Q79Kfs*10	ENST00000412916		78	cgA/cg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027997	48027997	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	276	498	0	ENST00000234420.5:c.2875C>A	p.Arg959Ser	p.R959S	ENST00000234420	NM_000179.2	959	Cgc/Agc																																																																															
BARD1	580	MSKCC	GRCh37	2	215646206	215646206	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	47	304	0	ENST00000260947.4:c.392G>C	p.Ser131Thr	p.S131T	ENST00000260947	NM_000465.2	131	aGt/aCt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589543	67589543	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			26	38	217	0	ENST00000274335.5:c.1306G>T	p.Val436Phe	p.V436F	ENST00000274335		436	Gtt/Ttt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671579	30671579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			731	192	568	0	ENST00000376406.3:c.5381C>T	p.Ala1794Val	p.A1794V	ENST00000376406	NM_014641.2	1794	gCa/gTa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192529	138192529	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	205	477	0	ENST00000237289.4:c.165G>C	p.Gln55His	p.Q55H	ENST00000237289	NM_001270507.1	55	caG/caC																																																																															
BRAF	673	MSKCC	GRCh37	7	140624365	140624365	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0065410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	305	421	0	ENST00000288602.6:c.138+1G>T		p.X46_splice	ENST00000288602	NM_004333.4	46																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151945101	151945102	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0065410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	56	347	0	ENST00000262189.6:c.2417_2418delinsAA	p.Ser806Ter	p.S806*	ENST00000262189	NM_170606.2	806	tCC/tAA																																																																															
ATRX	546	MSKCC	GRCh37	X	76889121	76889121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	120	329	0	ENST00000373344.5:c.4889C>A	p.Thr1630Asn	p.T1630N	ENST00000373344	NM_000489.3	1630	aCt/aAt																																																																															
BTK	695	MSKCC	GRCh37	X	100629540	100629540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	130	356	0	ENST00000308731.7:c.224C>T	p.Pro75Leu	p.P75L	ENST00000308731	NM_000061.2	75	cCa/cTa																																																																															
CTR9	9646	MSKCC	GRCh37	11	10797077	10797077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	155	448	0	ENST00000361367.2:c.2992G>A	p.Glu998Lys	p.E998K	ENST00000361367	NM_014633.3	998	Gaa/Aaa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118359382	118359382	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	108	563	0	ENST00000534358.1:c.4386G>C	p.Glu1462Asp	p.E1462D	ENST00000534358	NM_005933.3	1462	gaG/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0065439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	421	661	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
MSH2	4436	MSKCC	GRCh37	2	47657029	47657029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	153	449	0	ENST00000233146.2:c.1225C>T	p.Gln409Ter	p.Q409*	ENST00000233146	NM_000251.2	409	Cag/Tag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021628	31021628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			922	171	599	0	ENST00000375687.4:c.1627G>A	p.Glu543Lys	p.E543K	ENST00000375687	NM_015338.5	543	Gaa/Aaa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022844	31022844	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			896	182	569	0	ENST00000375687.4:c.2329G>C	p.Glu777Gln	p.E777Q	ENST00000375687	NM_015338.5	777	Gag/Cag																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664463	138664463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	91	260	0	ENST00000330315.3:c.1102G>A	p.Gly368Ser	p.G368S	ENST00000330315	NM_023067.3	368	Ggc/Agc																																																																															
ATR	545	MSKCC	GRCh37	3	142242931	142242931	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			798	196	526	0	ENST00000350721.4:c.4056G>C	p.Leu1352Phe	p.L1352F	ENST00000350721	NM_001184.3	1352	ttG/ttC																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591118	67591126	+	inframe_deletion	In_Frame_Del	DEL	ATCCAGCTG	ATCCAGCTG	-			P-0065439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	337	434	0	ENST00000274335.5:c.1712_1720del	p.Ile571_Leu573del	p.I571_L573del	ENST00000274335		571	ATCCAGCTG/-																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129270	152129270	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	97	484	0	ENST00000206249.3:c.223C>T	p.Gln75Ter	p.Q75*	ENST00000206249	NM_000125.3	75	Cag/Tag																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248124	110248124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	138	532	0	ENST00000374672.4:c.1348C>T	p.His450Tyr	p.H450Y	ENST00000374672	NM_004235.4	450	Cac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0065449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	301	311	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108115733	108115733	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1370428326		P-0065449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	69	373	0	ENST00000278616.4:c.881G>T	p.Gly294Val	p.G294V	ENST00000278616	NM_000051.3	294	gGa/gTa																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46715707	46715707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	34	384	0	ENST00000371975.4:c.126G>T	p.Gln42His	p.Q42H	ENST00000371975	NM_003579.3	42	caG/caT																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16047011	16047011	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0065449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	24	305	0	ENST00000268712.3:c.1083-1G>C		p.X361_splice	ENST00000268712	NM_006311.3	361																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37871591	37871591	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			725	46	517	0	ENST00000269571.5:c.1201G>C	p.Glu401Gln	p.E401Q	ENST00000269571		401	Gag/Cag																																																																															
TCF3	6929	MSKCC	GRCh37	19	1650243	1650243	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	86	460	0	ENST00000344749.5:c.5A>G	p.Asn2Ser	p.N2S	ENST00000344749	NM_001136139.2	2	aAc/aGc																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6222355	6222355	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	32	408	0	ENST00000252674.7:c.887G>T	p.Ser296Ile	p.S296I	ENST00000252674	NM_005934.3	296	aGc/aTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290911	15290911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	42	513	0	ENST00000263388.2:c.3299G>T	p.Arg1100Leu	p.R1100L	ENST00000263388	NM_000435.2	1100	cGt/cTt																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872914	136872914	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			800	46	621	0	ENST00000241393.3:c.584G>T	p.Trp195Leu	p.W195L	ENST00000241393	NM_003467.2	195	tGg/tTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69032463	69032463	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	67	422	0	ENST00000288368.4:c.3537G>T	p.Gln1179His	p.Q1179H	ENST00000288368	NM_024870.2	1179	caG/caT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057926	27057928	+	frameshift_variant	Frame_Shift_Del	DEL	CCC	CCC	TT			P-0065449-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			786	68	531	0	ENST00000324856.7:c.1634_1636delinsTT	p.Pro545LeufsTer74	p.P545Lfs*74	ENST00000324856	NM_006015.4	545	cCCCag/cTTag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	G	rs1131691039		P-0065461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	156	485	0	ENST00000269305.4:c.919+1G>C		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0065461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	56	251	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38282209	38282209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	76	545	0	ENST00000425967.3:c.847C>T	p.Pro283Ser	p.P283S	ENST00000425967	NM_001174067.1	283	Cct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0065469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	99	288	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852635	63852635	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	251	441	0	ENST00000279873.7:c.3413A>T	p.Gln1138Leu	p.Q1138L	ENST00000279873	NM_032199.2	1138	cAg/cTg																																																																															
CTR9	9646	MSKCC	GRCh37	11	10787960	10787960	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	80	242	0	ENST00000361367.2:c.1609C>G	p.Leu537Val	p.L537V	ENST00000361367	NM_014633.3	537	Cta/Gta																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610218	10610219	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0065469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	222	478	0	ENST00000171111.5:c.491_492del	p.Ile164ArgfsTer9	p.I164Rfs*9	ENST00000171111	NM_203500.1	164	aTC/a																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101913	11101913	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	42	448	0	ENST00000344626.4:c.1333C>T	p.Gln445Ter	p.Q445*	ENST00000344626	NM_003072.3	445	Cag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101920	11101921	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0065469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	41	444	0	ENST00000344626.4:c.1344_1345dup	p.Glu449AlafsTer53	p.E449Afs*53	ENST00000344626	NM_003072.3	447	ctg/ctGCg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739060	40739060	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	185	439	0	ENST00000373198.4:c.3224C>A	p.Pro1075His	p.P1075H	ENST00000373198	NM_133170.3	1075	cCc/cAc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876307	35876307	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	169	475	0	ENST00000303115.3:c.1099C>A	p.Leu367Ile	p.L367I	ENST00000303115	NM_002185.3	367	Ctc/Atc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6036966	6036966	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	126	318	0	ENST00000265849.7:c.794A>G	p.Asn265Ser	p.N265S	ENST00000265849	NM_000535.5	265	aAt/aGt																																																																															
POT1	25913	MSKCC	GRCh37	7	124475334	124475334	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0065469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	113	286	0	ENST00000357628.3:c.1504G>A	p.Gly502Arg	p.G502R	ENST00000357628	NM_015450.2	502	Gga/Aga																																																																															
TEK	7010	MSKCC	GRCh37	9	27202983	27202983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	203	443	0	ENST00000380036.4:c.2075C>A	p.Ala692Asp	p.A692D	ENST00000380036	NM_000459.3	692	gCc/gAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0065473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	17	325	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120527	70120527	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0065473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	43	539	0	ENST00000245479.2:c.1529G>C	p.Ter510SerextTer49	p.*510Sext*49	ENST00000245479	NM_000346.3	510	tGa/tCa																																																																															
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0065473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	49	478	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17937611	17937611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	35	502	0	ENST00000458235.1:c.3316G>A	p.Glu1106Lys	p.E1106K	ENST00000458235	NM_000215.3	1106	Gag/Aag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117641177	117641177	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773843792		P-0065473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	28	617	0	ENST00000368508.3:c.5794G>A	p.Glu1932Lys	p.E1932K	ENST00000368508	NM_002944.2	1932	Gag/Aag																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0065473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	38	367	0	ENST00000412916.2:c.165+1G>T		p.X55_splice	ENST00000412916		55																																																																																
ATM	472	MSKCC	GRCh37	11	108216590	108216590	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	33	421	0	ENST00000278616.4:c.8539G>C	p.Glu2847Gln	p.E2847Q	ENST00000278616	NM_000051.3	2847	Gag/Cag																																																																															
ERF	2077	MSKCC	GRCh37	19	42753795	42753795	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1433054936		P-0065473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	47	601	0	ENST00000222329.4:c.469G>A	p.Glu157Lys	p.E157K	ENST00000222329	NM_006494.2	157	Gag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108196110	108196110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	23	424	0	ENST00000278616.4:c.6646G>A	p.Asp2216Asn	p.D2216N	ENST00000278616	NM_000051.3	2216	Gat/Aat																																																																															
CDH1	999	MSKCC	GRCh37	16	68846050	68846072	+	frameshift_variant	Frame_Shift_Del	DEL	TATACCCTGGTGGTTCAAGCTGC	TATACCCTGGTGGTTCAAGCTGC	-			P-0065473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	42	505	0	ENST00000261769.5:c.1022_1044del	p.Tyr341Ter	p.Y341*	ENST00000261769	NM_004360.3	341	TATACCCTGGTGGTTCAAGCTGCt/t																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231488	5231488	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200172769		P-0065473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	22	472	0	ENST00000357368.4:c.1988C>T	p.Ser663Leu	p.S663L	ENST00000357368	NM_002850.3	663	tCa/tTa																																																																															
KDR	3791	MSKCC	GRCh37	4	55976582	55976582	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	34	409	0	ENST00000263923.4:c.1243C>G	p.Leu415Val	p.L415V	ENST00000263923	NM_002253.2	415	Ctg/Gtg																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020808	26020808	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs377197123		P-0065473-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	40	722	0	ENST00000357647.3:c.91C>G	p.Pro31Ala	p.P31A	ENST00000357647	NM_003529.2	31	Ccg/Gcg																																																																															
CDH1	999	MSKCC	GRCh37	16	68771344	68771372	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGGCGCTGCTGCTGCTGCTGCAGGTACCC	CGGCGCTGCTGCTGCTGCTGCAGGTACCC	-			P-0065481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	65	279	0	ENST00000261769.5:c.29_48+9del		p.X10_splice	ENST00000261769	NM_004360.3	10																																																																																
GSK3B	2932	MSKCC	GRCh37	3	119634961	119634961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	136	453	0	ENST00000316626.5:c.538C>T	p.Arg180Trp	p.R180W	ENST00000316626		180	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0065481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	144	450	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	35	477	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	106	486	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
APC	324	MSKCC	GRCh37	5	112155042	112155042	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0065534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	138	364	0	ENST00000257430.4:c.1312+1G>T		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27059284	27059284	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0065534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	141	351	0	ENST00000324856.7:c.1920+1G>A		p.X640_splice	ENST00000324856	NM_006015.4	640																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0065534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	124	261	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MAX	4149	MSKCC	GRCh37	14	65560491	65560491	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	197	375	0	ENST00000358664.4:c.106A>T	p.Arg36Trp	p.R36W	ENST00000358664	NM_002382.4	36	Agg/Tgg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44913119	44913119	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	133	341	0	ENST00000377967.4:c.794A>T	p.Lys265Met	p.K265M	ENST00000377967	NM_021140.2	265	aAg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578509	7578509	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519978		P-0065539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	323	400	0	ENST00000269305.4:c.421T>C	p.Cys141Arg	p.C141R	ENST00000269305	NM_001126112.2	141	Tgc/Cgc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458729	120458729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	96	453	0	ENST00000256646.2:c.6616G>A	p.Glu2206Lys	p.E2206K	ENST00000256646	NM_024408.3	2206	Gaa/Aaa																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631594	90631594	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	192	453	0	ENST00000330062.3:c.675C>G	p.Asp225Glu	p.D225E	ENST00000330062	NM_002168.2	225	gaC/gaG																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944254	81944259	+	inframe_deletion	In_Frame_Del	DEL	CCTGCG	CCTGCG	-			P-0065539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	49	347	0	ENST00000359376.3:c.1864_1869del	p.Leu622_Arg623del	p.L622_R623del	ENST00000359376	NM_002661.3	621	caCCTGCGc/cac																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544234	86544234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	147	499	0	ENST00000262426.4:c.59G>A	p.Gly20Glu	p.G20E	ENST00000262426	NM_001451.2	20	gGg/gAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961240	15961240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	219	354	0	ENST00000268712.3:c.6149C>T	p.Thr2050Ile	p.T2050I	ENST00000268712	NM_006311.3	2050	aCa/aTa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530078	63530078	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0065539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	75	308	0	ENST00000307078.5:c.2357T>A	p.Leu786Ter	p.L786*	ENST00000307078	NM_004655.3	786	tTg/tAg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502621	149502621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	67	341	0	ENST00000261799.4:c.2167G>A	p.Gly723Arg	p.G723R	ENST00000261799	NM_002609.3	723	Ggg/Agg																																																																															
STK19	8859	MSKCC	GRCh37	6	31940216	31940216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	219	461	0	ENST00000375331.2:c.358C>T	p.Pro120Ser	p.P120S	ENST00000375331	NM_004197.1	120	Ccg/Tcg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410450	139410455	+	inframe_deletion	In_Frame_Del	DEL	GTGTAA	GTGTAA	-			P-0065539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	62	364	0	ENST00000277541.6:c.1647_1652del	p.Tyr550_Thr551del	p.Y550_T551del	ENST00000277541	NM_017617.3	549	acTTACACc/acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0065540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	38	336	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0065540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	25	371	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0065540-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	13	191	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TET1	80312	MSKCC	GRCh37	10	70426881	70426881	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065541-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	70	332	0	ENST00000373644.4:c.4541T>A	p.Val1514Glu	p.V1514E	ENST00000373644	NM_030625.2	1514	gTg/gAg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0065541-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	60	295	1	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161789	47161789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065541-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	63	373	0	ENST00000409792.3:c.4337G>T	p.Gly1446Val	p.G1446V	ENST00000409792	NM_014159.6	1446	gGg/gTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0065541-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	108	243	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039340	47039345	+	frameshift_variant	Frame_Shift_Ins	INS	ACCCTA	ACCCTA	CCCCCTTT			P-0065541-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	80	419	0	ENST00000329236.7:c.732_737delinsCCCCCTTT	p.Tyr246LeufsTer13	p.Y246Lfs*13	ENST00000329236	NM_001204466.1	244	gcACCCTAc/gcCCCCCTTTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0065542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	333	397	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627182	37627182	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0065542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	238	264	0	ENST00000447079.4:c.1097C>G	p.Ser366Ter	p.S366*	ENST00000447079	NM_015083.1	366	tCa/tGa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602727	10602727	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	197	464	0	ENST00000171111.5:c.851A>T	p.Gln284Leu	p.Q284L	ENST00000171111	NM_203500.1	284	cAg/cTg																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205319	61205319	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0065542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	75	275	0	ENST00000301761.2:c.259A>T	p.Ser87Cys	p.S87C	ENST00000301761	NM_017841.2	87	Agt/Tgt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892316	9892316	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	114	374	0	ENST00000330684.3:c.2174T>C	p.Leu725Pro	p.L725P	ENST00000330684	NM_001134407.1	725	cTg/cCg																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872852	136872853	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0065542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	142	431	0	ENST00000241393.3:c.645_646delinsAA	p.Leu216Met	p.L216M	ENST00000241393	NM_003467.2	215	atCCtg/atAAtg																																																																															
SRC	6714	MSKCC	GRCh37	20	36031761	36031761	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	90	485	0	ENST00000358208.4:c.1590C>A	p.Tyr530Ter	p.Y530*	ENST00000358208		530	taC/taA																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31429638	31429638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	34	235	0	ENST00000344624.3:c.3160G>A	p.Glu1054Lys	p.E1054K	ENST00000344624		1054	Gag/Aag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86668013	86668013	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0065542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	138	236	0	ENST00000274376.6:c.1776+1G>T		p.X592_splice	ENST00000274376	NM_002890.2	592																																																																																
GATA3	2625	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0065536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	244	442	0	ENST00000346208.3:c.990dup	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37681031	37681031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143648695		P-0065536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	112	413	0	ENST00000447079.4:c.3200G>A	p.Arg1067Gln	p.R1067Q	ENST00000447079	NM_015083.1	1067	cGa/cAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101257	27101269	+	frameshift_variant	Frame_Shift_Del	DEL	CACGGGCTCTGCC	CACGGGCTCTGCC	-			P-0065536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	182	480	0	ENST00000324856.7:c.4540_4552del	p.Thr1514ProfsTer9	p.T1514Pfs*9	ENST00000324856	NM_006015.4	1513	agCACGGGCTCTGCC/ag																																																																															
INSR	3643	MSKCC	GRCh37	19	7172317	7172317	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	93	381	0	ENST00000302850.5:c.1252G>C	p.Glu418Gln	p.E418Q	ENST00000302850	NM_000208.2	418	Gag/Cag																																																																															
PMS1	5378	MSKCC	GRCh37	2	190660649	190660649	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	130	431	0	ENST00000441310.2:c.287C>G	p.Ala96Gly	p.A96G	ENST00000441310	NM_000534.4	96	gCc/gGc																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26021009	26021009	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	143	621	0	ENST00000357647.3:c.292G>C	p.Glu98Gln	p.E98Q	ENST00000357647	NM_003529.2	98	Gag/Cag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117686345	117686345	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065536-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	191	329	0	ENST00000368508.3:c.2996C>A	p.Ser999Tyr	p.S999Y	ENST00000368508	NM_002944.2	999	tCt/tAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0065581-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	58	296	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073921	8073922	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0065581-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	77	459	0	ENST00000377482.5:c.737_738insCT	p.Leu246PhefsTer2	p.L246Ffs*2	ENST00000377482	NM_018948.3	246	tta/ttCTa																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150923080	150923080	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065581-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	89	403	0	ENST00000271640.5:c.1727A>T	p.His576Leu	p.H576L	ENST00000271640	NM_001145415.1	576	cAt/cTt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838409	156838409	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065581-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	137	528	0	ENST00000524377.1:c.687del	p.Thr230GlnfsTer9	p.T230Qfs*9	ENST00000524377	NM_002529.3	229	ctC/ct																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945014	31945014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065581-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	101	555	0	ENST00000340398.3:c.87C>A	p.Ser29Arg	p.S29R	ENST00000340398	NM_001013699.2	29	agC/agA																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811772	102811772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065581-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	83	501	0	ENST00000307046.8:c.412C>T	p.Pro138Ser	p.P138S	ENST00000307046	NM_001111285.1	138	Cca/Tca																																																																															
NF1	4763	MSKCC	GRCh37	17	29679418	29679419	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0065581-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	72	335	0	ENST00000358273.4:c.7602dup	p.Lys2535Ter	p.K2535*	ENST00000358273	NM_001042492.2	2534	act/acTt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966100	25966100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065581-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	60	455	0	ENST00000435504.4:c.3106C>T	p.Leu1036Phe	p.L1036F	ENST00000435504		1036	Ctt/Ttt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202752	128202752	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065581-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	75	435	0	ENST00000341105.2:c.968A>G	p.His323Arg	p.H323R	ENST00000341105	NM_032638.4	323	cAc/cGc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372008	55372008	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065581-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	54	492	0	ENST00000297316.4:c.698A>C	p.Asp233Ala	p.D233A	ENST00000297316	NM_022454.3	233	gAc/gCc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028828	47028828	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0065581-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	72	445	0	ENST00000329236.7:c.132T>G	p.Tyr44Ter	p.Y44*	ENST00000329236	NM_001204466.1	44	taT/taG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0057732-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			902	179	485	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0057732-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			719	135	513	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0057732-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			552	302	516	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106543511	106543511	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057732-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			659	108	430	0	ENST00000369096.4:c.313G>T	p.Glu105Ter	p.E105*	ENST00000369096	NM_001198.3	105	Gaa/Taa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609905	81609906	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0057732-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			645	68	561	0	ENST00000298171.2:c.1504_1505del	p.Val502LeufsTer60	p.V502Lfs*60	ENST00000298171	NM_000369.2	501	acTGtc/actc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306583	41306583	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057732-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			582	73	444	2	ENST00000373198.4:c.1076G>T	p.Arg359Leu	p.R359L	ENST00000373198	NM_133170.3	359	cGa/cTa																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186503789	186503789	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781218973		P-0057732-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			770	87	421	0	ENST00000323963.5:c.466G>A	p.Val156Ile	p.V156I	ENST00000323963		156	Gtt/Att																																																																															
GATA1	2623	MSKCC	GRCh37	X	48651578	48651578	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0057732-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			485	106	525	0	ENST00000376670.3:c.745-1G>T		p.X249_splice	ENST00000376670	NM_002049.3	249																																																																																
PTEN	5728	MSKCC	GRCh37	10	89624274	89624274	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0063942-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			195	91	198	0	ENST00000371953.3:c.48T>G	p.Tyr16Ter	p.Y16*	ENST00000371953	NM_000314.4	16	taT/taG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445748	49445748	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063942-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			715	234	722	0	ENST00000301067.7:c.1718C>G	p.Ser573Cys	p.S573C	ENST00000301067	NM_003482.3	573	tCt/tGt																																																																															
B2M	567	MSKCC	GRCh37	15	45003787	45003787	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063942-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			402	159	443	0	ENST00000558401.1:c.43del	p.Leu15PhefsTer29	p.L15Ffs*29	ENST00000558401	NM_004048.2	15	Ctt/tt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220452	1220452	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730881974		P-0063942-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			392	186	544	2	ENST00000326873.7:c.545T>C	p.Leu182Pro	p.L182P	ENST00000326873	NM_000455.4	182	cTg/cCg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2213914	2213914	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0063942-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			423	199	545	0	ENST00000398665.3:c.1726C>T	p.Gln576Ter	p.Q576*	ENST00000398665	NM_032482.2	576	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600434	10600450	+	frameshift_variant	Frame_Shift_Del	DEL	GCATAAAGGAGACGATT	GCATAAAGGAGACGATT	-			P-0063942-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	174	584	0	ENST00000171111.5:c.1405_1421del	p.Asn469ArgfsTer5	p.N469Rfs*5	ENST00000171111	NM_203500.1	469	AATCGTCTCCTTTATGCc/c																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660706	227660706	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063942-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			596	86	603	0	ENST00000305123.5:c.2749A>T	p.Ser917Cys	p.S917C	ENST00000305123	NM_005544.2	917	Agc/Tgc																																																																															
NF2	4771	MSKCC	GRCh37	22	30054254	30054254	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0063942-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	123	394	0	ENST00000338641.4:c.675+1G>A		p.X225_splice	ENST00000338641	NM_000268.3	225																																																																																
EP300	2033	MSKCC	GRCh37	22	41527622	41527622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063942-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			379	154	387	0	ENST00000263253.7:c.1513C>T	p.Pro505Ser	p.P505S	ENST00000263253	NM_001429.3	505	Ccc/Tcc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120695	94120695	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063942-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	147	432	0	ENST00000369303.4:c.356G>T	p.Cys119Phe	p.C119F	ENST00000369303	NM_004440.3	119	tGc/tTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484363	8484363	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063942-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			289	159	309	0	ENST00000356435.5:c.3169G>T	p.Gly1057Trp	p.G1057W	ENST00000356435		1057	Ggg/Tgg																																																																															
CDH1	999	MSKCC	GRCh37	16	68772299	68772321	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGCGTCCTGGGCAGAGGTGAGGG	CGCGTCCTGGGCAGAGGTGAGGG	-			P-0063952-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	236	532	0	ENST00000261769.5:c.152_163+11del		p.X51_splice	ENST00000261769	NM_004360.3	51																																																																																
CBFB	865	MSKCC	GRCh37	16	67063356	67063356	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063952-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			313	277	477	0	ENST00000412916.2:c.46G>T	p.Glu16Ter	p.E16*	ENST00000412916		16	Gag/Tag																																																																															
GNA11	2767	MSKCC	GRCh37	19	3119208	3119208	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063952-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			631	317	606	0	ENST00000078429.4:c.740G>T	p.Arg247Leu	p.R247L	ENST00000078429	NM_002067.2	247	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0064371-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			172	128	692	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs137853076		P-0064371-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			199	94	529	0	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag																																																																															
NUF2	83540	MSKCC	GRCh37	1	163325125	163325125	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0064371-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			114	47	331	0	ENST00000271452.3:c.1261G>A	p.Glu421Lys	p.E421K	ENST00000271452	NM_145697.2	421	Gaa/Aaa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599973	10599974	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0064371-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			143	107	540	0	ENST00000171111.5:c.1602_1603delinsTT	p.Glu535Ter	p.E535*	ENST00000171111	NM_203500.1	534	gtGGag/gtTTag																																																																															
ALK	238	MSKCC	GRCh37	2	29519925	29519925	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0064371-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			146	20	421	0	ENST00000389048.3:c.1648-2A>T		p.X550_splice	ENST00000389048	NM_004304.4	550																																																																																
ERG	2078	MSKCC	GRCh37	21	39755717	39755717	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064371-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			246	20	492	0	ENST00000288319.7:c.1048C>A	p.Arg350Ser	p.R350S	ENST00000288319	NM_182918.3	350	Cgc/Agc																																																																															
ATR	545	MSKCC	GRCh37	3	142168413	142168413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1314855850		P-0064371-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			180	84	351	0	ENST00000350721.4:c.7793G>A	p.Arg2598Gln	p.R2598Q	ENST00000350721	NM_001184.3	2598	cGa/cAa																																																																															
ATRX	546	MSKCC	GRCh37	X	76937831	76937831	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064371-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			178	52	504	1	ENST00000373344.5:c.2917C>A	p.Gln973Lys	p.Q973K	ENST00000373344	NM_000489.3	973	Cag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108216546	108216546	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs529296539		P-0064839-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	79	234	0	ENST00000278616.4:c.8495G>T	p.Arg2832Leu	p.R2832L	ENST00000278616	NM_000051.3	2832	cGt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0064839-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	106	192	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
INSR	3643	MSKCC	GRCh37	19	7119557	7119557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064839-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	148	272	0	ENST00000302850.5:c.3697G>T	p.Ala1233Ser	p.A1233S	ENST00000302850	NM_000208.2	1233	Gca/Tca																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670806	134670806	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064839-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	186	315	0	ENST00000398015.3:c.717C>A	p.Tyr239Ter	p.Y239*	ENST00000398015	NM_004441.4	239	taC/taA																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0064920-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	35	372	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0064920-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	35	389	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591125	67591126	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAGAAAGAC			P-0064920-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			53	21	323	0	ENST00000274335.5:c.1723_1731dup	p.Lys575_Arg577dup	p.K575_R577dup	ENST00000274335		575	ctg/ctGAGAAAGACg																																																																															
AKT1	207	MSKCC	GRCh37	14	105243048	105243048	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519804		P-0064920-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	51	597	0	ENST00000349310.3:c.235C>A	p.Gln79Lys	p.Q79K	ENST00000349310	NM_001014432.1	79	Cag/Aag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230571	46230571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064920-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	30	418	0	ENST00000334344.6:c.820C>T	p.Arg274Ter	p.R274*	ENST00000334344	NM_152641.2	274	Cga/Tga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2100432	2100432	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397514949		P-0064920-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	52	333	0	ENST00000219476.3:c.170G>A	p.Arg57His	p.R57H	ENST00000219476	NM_000548.3	57	cGc/cAc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938396	44938396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064920-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			13	17	120	0	ENST00000377967.4:c.2944G>A	p.Gly982Arg	p.G982R	ENST00000377967	NM_021140.2	982	Gga/Aga																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46574043	46574043	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1394833849		P-0064920-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	94	543	0	ENST00000263734.3:c.58C>T	p.Arg20Trp	p.R20W	ENST00000263734	NM_001430.4	20	Cgg/Tgg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864751	68864751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064920-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	39	396	0	ENST00000288368.4:c.122C>T	p.Thr41Met	p.T41M	ENST00000288368	NM_024870.2	41	aCg/aTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245638	46245638	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064920-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	38	456	0	ENST00000334344.6:c.3732C>A	p.Cys1244Ter	p.C1244*	ENST00000334344	NM_152641.2	1244	tgC/tgA																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518421	69518421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064920-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	52	326	0	ENST00000294312.3:c.224G>A	p.Ser75Asn	p.S75N	ENST00000294312	NM_005117.2	75	aGc/aAc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243489	41243489	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0064920-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	36	445	0	ENST00000357654.3:c.4059A>C	p.Glu1353Asp	p.E1353D	ENST00000357654	NM_007294.3	1353	gaA/gaC																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965811	25965811	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064920-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			70	50	477	0	ENST00000435504.4:c.3395G>C	p.Gly1132Ala	p.G1132A	ENST00000435504		1132	gGc/gCc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119545685	119545685	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202055878		P-0064920-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	60	372	0	ENST00000316626.5:c.1252C>T	p.Arg418Cys	p.R418C	ENST00000316626		418	Cgt/Tgt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69032485	69032485	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064920-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	55	386	0	ENST00000288368.4:c.3559C>G	p.Gln1187Glu	p.Q1187E	ENST00000288368	NM_024870.2	1187	Caa/Gaa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004628	150004628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	187	598	0	ENST00000253339.5:c.1597C>T	p.Pro533Ser	p.P533S	ENST00000253339		533	Cct/Tct																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361136	66361136	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	109	441	0	ENST00000273854.3:c.1036G>T	p.Glu346Ter	p.E346*	ENST00000273854	NM_004439.5	346	Gag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575169	48575169	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	191	404	0	ENST00000342988.3:c.366del	p.Lys122AsnfsTer7	p.K122Nfs*7	ENST00000342988	NM_005359.5	121	ttA/tt																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946060	13946060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			787	108	346	0	ENST00000405192.2:c.1036G>A	p.Glu346Lys	p.E346K	ENST00000405192	NM_001163147.1	346	Gaa/Aaa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021535	31021535	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs757832294		P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			774	158	563	0	ENST00000375687.4:c.1534C>T	p.Gln512Ter	p.Q512*	ENST00000375687	NM_015338.5	512	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	24	361	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	269	318	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
POT1	25913	MSKCC	GRCh37	7	124503463	124503463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	223	441	0	ENST00000357628.3:c.487G>T	p.Asp163Tyr	p.D163Y	ENST00000357628	NM_015450.2	163	Gac/Tac																																																																															
ATM	472	MSKCC	GRCh37	11	108203580	108203580	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs767670019		P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	247	422	0	ENST00000278616.4:c.7880A>G	p.Tyr2627Cys	p.Y2627C	ENST00000278616	NM_000051.3	2627	tAt/tGt																																																																															
BRAF	673	MSKCC	GRCh37	7	140454002	140454002	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057517915		P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	191	344	0	ENST00000288602.6:c.1726G>T	p.Asp576Tyr	p.D576Y	ENST00000288602	NM_004333.4	576	Gac/Tac																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125497654	125497654	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	223	424	0	ENST00000428830.2:c.218A>G	p.His73Arg	p.H73R	ENST00000428830	NM_001114121.2	73	cAc/cGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431976	49431976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			796	493	659	0	ENST00000301067.7:c.9163C>T	p.Pro3055Ser	p.P3055S	ENST00000301067	NM_003482.3	3055	Cct/Tct																																																																															
MSI1	4440	MSKCC	GRCh37	12	120784078	120784078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	346	617	0	ENST00000257552.2:c.907C>A	p.Arg303Ser	p.R303S	ENST00000257552	NM_002442.3	303	Cgc/Agc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28886144	28886144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	82	265	0	ENST00000282397.4:c.3478G>A	p.Ala1160Thr	p.A1160T	ENST00000282397	NM_002019.4	1160	Gca/Aca																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435893	110435893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	198	530	0	ENST00000375856.3:c.2508G>T	p.Glu836Asp	p.E836D	ENST00000375856	NM_003749.2	836	gaG/gaT																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724721	43724721	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	300	496	0	ENST00000382044.4:c.3346G>T	p.Gly1116Trp	p.G1116W	ENST00000382044	NM_001141980.1	1116	Ggg/Tgg																																																																															
BLM	641	MSKCC	GRCh37	15	91308574	91308574	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	241	435	0	ENST00000355112.3:c.2123G>T	p.Gly708Val	p.G708V	ENST00000355112	NM_000057.2	708	gGg/gTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641121	3641121	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759271070		P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			747	170	517	0	ENST00000294008.3:c.2518G>A	p.Glu840Lys	p.E840K	ENST00000294008	NM_032444.2	840	Gaa/Aaa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029255	14029255	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	469	539	0	ENST00000311895.7:c.1466A>G	p.Lys489Arg	p.K489R	ENST00000311895	NM_005236.2	489	aAa/aGa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50820771	50820771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	77	353	0	ENST00000398568.2:c.1946G>A	p.Gly649Glu	p.G649E	ENST00000398568	NM_001042412.1	649	gGa/gAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992548	72992548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	149	476	0	ENST00000268489.5:c.1497G>T	p.Leu499Phe	p.L499F	ENST00000268489	NM_006885.3	499	ttG/ttT																																																																															
NF1	4763	MSKCC	GRCh37	17	29556157	29556158	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	58	165	0	ENST00000358273.4:c.2524_2525delinsCT	p.Gly842Leu	p.G842L	ENST00000358273	NM_001042492.2	842	GGc/CTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928264	178928264	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1004909638		P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	245	392	0	ENST00000263967.3:c.1450G>T	p.Val484Leu	p.V484L	ENST00000263967	NM_006218.2	484	Gta/Tta																																																																															
TERT	7015	MSKCC	GRCh37	5	1295847	1295847	+	upstream_gene_variant	5'Flank	SNP	C	C	T	rs1049319082		P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1359	330	638	0				ENST00000310581	NM_198253.2																																																																																	
IL7R	3575	MSKCC	GRCh37	5	35876427	35876427	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	224	538	0	ENST00000303115.3:c.1219A>T	p.Ser407Cys	p.S407C	ENST00000303115	NM_002185.3	407	Agc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112174793	112174793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	135	477	0	ENST00000257430.4:c.3502G>A	p.Glu1168Lys	p.E1168K	ENST00000257430	NM_000038.5	1168	Gaa/Aaa																																																																															
E2F3	1871	MSKCC	GRCh37	6	20480156	20480156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	110	379	0	ENST00000346618.3:c.473G>A	p.Arg158Lys	p.R158K	ENST00000346618	NM_001949.4	158	aGa/aAa																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839921	27839921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			776	217	681	0	ENST00000328488.2:c.173C>T	p.Ser58Leu	p.S58L	ENST00000328488	NM_003533.2	58	tCg/tTg																																																																															
SMO	6608	MSKCC	GRCh37	7	128843391	128843391	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	125	457	0	ENST00000249373.3:c.498C>A	p.Phe166Leu	p.F166L	ENST00000249373	NM_005631.4	166	ttC/ttA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0065240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	84	557	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971137	21971137	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	73	547	0	ENST00000304494.5:c.221A>T	p.Asp74Val	p.D74V	ENST00000304494	NM_000077.4	74	gAc/gTc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729529	41729529	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138538132		P-0065240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	105	593	0	ENST00000242208.4:c.1000G>A	p.Gly334Ser	p.G334S	ENST00000242208	NM_002192.2	334	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TC			P-0065240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	50	415	0	ENST00000256078.4:c.180_181inv	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggGAaa																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112942518	112942518	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	68	341	0	ENST00000351677.2:c.1732A>G	p.Arg578Gly	p.R578G	ENST00000351677	NM_002834.3	578	Aga/Gga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119827	70119828	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0065242-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	41	422	0	ENST00000245479.2:c.830dup	p.Leu278AlafsTer18	p.L278Afs*18	ENST00000245479	NM_000346.3	277	gag/gAag																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573196	64573196	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	332	709	0	ENST00000337652.1:c.1111G>T	p.Glu371Ter	p.E371*	ENST00000337652	NM_130803.2	371	Gaa/Taa																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446834	29446834	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375016509		P-0065243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	237	614	0	ENST00000544604.2:c.2665C>T	p.Arg889Trp	p.R889W	ENST00000544604	NM_001206998.1	889	Cgg/Tgg																																																																															
TEK	7010	MSKCC	GRCh37	9	27202925	27202925	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749958421		P-0065246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	62	553	0	ENST00000380036.4:c.2017C>T	p.Arg673Cys	p.R673C	ENST00000380036	NM_000459.3	673	Cgt/Tgt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608309	28608309	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767430269		P-0065246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	109	630	0	ENST00000241453.7:c.1747G>A	p.Gly583Ser	p.G583S	ENST00000241453	NM_004119.2	583	Ggc/Agc																																																																															
ATM	472	MSKCC	GRCh37	11	108235946	108235946	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0065246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			27	130	613	0	ENST00000278616.4:c.8987+1G>A		p.X2996_splice	ENST00000278616	NM_000051.3	2996																																																																																
PRKD1	5587	MSKCC	GRCh37	14	30100026	30100026	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	97	658	0	ENST00000331968.5:c.1594T>A	p.Trp532Arg	p.W532R	ENST00000331968	NM_002742.2	532	Tgg/Agg																																																																															
ALK	238	MSKCC	GRCh37	2	29420415	29420415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	44	578	0	ENST00000389048.3:c.4066G>A	p.Gly1356Arg	p.G1356R	ENST00000389048	NM_004304.4	1356	Ggg/Agg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33286839	33286839	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	215	792	0	ENST00000374542.5:c.2098A>T	p.Ile700Phe	p.I700F	ENST00000374542	NM_001141970.1	700	Atc/Ttc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0065265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	34	594	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs863224499		P-0065265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	51	623	0	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0065265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	19	351	0	ENST00000256078.4:c.34_35delinsAT	p.Gly12Ile	p.G12I	ENST00000256078	NM_033360.2	12	GGt/ATt																																																																															
MGA	23269	MSKCC	GRCh37	15	42041533	42041533	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	35	497	0	ENST00000219905.7:c.5728C>T	p.Gln1910Ter	p.Q1910*	ENST00000219905	NM_001164273.1	1910	Caa/Taa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81941330	81941330	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065265-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	30	387	0	ENST00000359376.3:c.1508T>A	p.Leu503Gln	p.L503Q	ENST00000359376	NM_002661.3	503	cTg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0065269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	47	579	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115451	115115451	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0065269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	20	461	0	ENST00000257566.3:c.875T>A	p.Leu292Ter	p.L292*	ENST00000257566	NM_016569.3	292	tTa/tAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151864455	151864455	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0065269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	43	370	0	ENST00000262189.6:c.9526C>T	p.Gln3176Ter	p.Q3176*	ENST00000262189	NM_170606.2	3176	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767345		P-0065271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	59	574	0	ENST00000342988.3:c.1055G>A	p.Gly352Glu	p.G352E	ENST00000342988	NM_005359.5	352	gGa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs764146326		P-0065271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	80	640	0	ENST00000269305.4:c.841G>T	p.Asp281Tyr	p.D281Y	ENST00000269305	NM_001126112.2	281	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0065271-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	53	355	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0065272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	134	513	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0065272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	109	552	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645693	12645693	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs397516827		P-0065272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	109	485	0	ENST00000251849.4:c.776C>G	p.Ser259Cys	p.S259C	ENST00000251849	NM_002880.3	259	tCc/tGc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942214	71942214	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1253875635		P-0065272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	128	605	0	ENST00000298229.2:c.1478C>T	p.Thr493Met	p.T493M	ENST00000298229	NM_001567.3	493	aCg/aTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247169	153247169	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	208	440	0	ENST00000281708.4:c.1633T>A	p.Tyr545Asn	p.Y545N	ENST00000281708	NM_033632.3	545	Tat/Aat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56152482	56152482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	85	527	0	ENST00000399503.3:c.538C>T	p.Pro180Ser	p.P180S	ENST00000399503	NM_005921.1	180	Cca/Tca																																																																															
APC	324	MSKCC	GRCh37	5	112175349	112175352	+	frameshift_variant	Frame_Shift_Del	DEL	AATT	AATT	-			P-0065272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	78	541	0	ENST00000257430.4:c.4058_4061del	p.Glu1353ValfsTer61	p.E1353Vfs*61	ENST00000257430	NM_000038.5	1353	gAATTt/gt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0065275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	125	438	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023339	31023339	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	102	645	0	ENST00000375687.4:c.2827del	p.Asp943IlefsTer2	p.D943Ifs*2	ENST00000375687	NM_015338.5	942	Ggg/gg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280804	41280804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	122	630	0	ENST00000349496.5:c.2317C>T	p.Gln773Ter	p.Q773*	ENST00000349496	NM_001904.3	773	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0065275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	52	321	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153253855	153253861	+	frameshift_variant	Frame_Shift_Del	DEL	AGCACAT	AGCACAT	-			P-0065275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	124	358	0	ENST00000281708.4:c.872_878del	p.Tyr291PhefsTer49	p.Y291Ffs*49	ENST00000281708	NM_033632.3	291	tATGTGCTt/tt																																																																															
APC	324	MSKCC	GRCh37	5	112170862	112170862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1060503318		P-0065275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	129	421	0	ENST00000257430.4:c.1958G>A	p.Arg653Lys	p.R653K	ENST00000257430	NM_000038.5	653	aGg/aAg																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0065275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	87	552	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910609	29910609	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199474372		P-0065275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	97	659	0	ENST00000376809.5:c.149G>A	p.Gly50Asp	p.G50D	ENST00000376809	NM_002116.7	50	gGc/gAc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781266	9781266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	29	398	0	ENST00000377346.4:c.1771C>A	p.His591Asn	p.H591N	ENST00000377346	NM_005026.3	591	Cac/Aac																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120497748	120497748	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782035658		P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	54	471	0	ENST00000256646.2:c.2134C>T	p.Pro712Ser	p.P712S	ENST00000256646	NM_024408.3	712	Ccc/Tcc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162735842	162735842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	157	357	0	ENST00000367921.3:c.1151C>T	p.Pro384Leu	p.P384L	ENST00000367921	NM_006182.2	384	cCc/cTc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	465673	465674	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	44	291	0	ENST00000399788.2:c.702_703delinsTT	p.Glu235Ter	p.E235*	ENST00000399788	NM_001042603.1	234	acGGaa/acTTaa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18439832	18439832	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs971992008		P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	57	281	0	ENST00000266497.5:c.730A>T	p.Ser244Cys	p.S244C	ENST00000266497		244	Agt/Tgt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123891	46123891	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	99	436	0	ENST00000334344.6:c.157A>T	p.Arg53Ter	p.R53*	ENST00000334344	NM_152641.2	53	Aga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445248	49445248	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	118	543	0	ENST00000301067.7:c.2218G>T	p.Gly740Trp	p.G740W	ENST00000301067	NM_003482.3	740	Ggg/Tgg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527946	103527946	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	182	440	0	ENST00000355739.4:c.3254G>C	p.Gly1085Ala	p.G1085A	ENST00000355739	NM_000123.3	1085	gGt/gCt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434835	99434835	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1476643383		P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	60	423	0	ENST00000268035.6:c.922C>T	p.Pro308Ser	p.P308S	ENST00000268035	NM_000875.3	308	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	91	479	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																															
NF1	4763	MSKCC	GRCh37	17	29654550	29654550	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	86	392	0	ENST00000358273.4:c.5302G>T	p.Glu1768Ter	p.E1768*	ENST00000358273	NM_001042492.2	1768	Gag/Tag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37628000	37628000	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1376424345		P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	70	383	0	ENST00000447079.4:c.1915G>C	p.Asp639His	p.D639H	ENST00000447079	NM_015083.1	639	Gat/Cat																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40384135	40384135	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	67	315	0	ENST00000293328.3:c.11G>A	p.Trp4Ter	p.W4*	ENST00000293328	NM_012448.3	4	tGg/tAg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597401	10597401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	48	364	0	ENST00000171111.5:c.1802G>A	p.Arg601Gln	p.R601Q	ENST00000171111	NM_203500.1	601	cGg/cAg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610198	10610198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	105	488	0	ENST00000171111.5:c.512G>A	p.Cys171Tyr	p.C171Y	ENST00000171111	NM_203500.1	171	tGc/tAc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279534	18279534	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	68	285	0	ENST00000222254.8:c.1809-2A>T		p.X603_splice	ENST00000222254	NM_005027.3	603																																																																																
INPP4A	3631	MSKCC	GRCh37	2	99163151	99163151	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs771298129		P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	60	337	0	ENST00000074304.5:c.1157A>G	p.Lys386Arg	p.K386R	ENST00000074304	NM_001134224.1	386	aAg/aGg																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204737471	204737472	+	missense_variant	Missense_Mutation	DNP	AA	AA	TT			P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	42	389	0	ENST00000302823.3:c.608_609inv	p.Lys203Ile	p.K203I	ENST00000302823	NM_005214.4	203	aAA/aTT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295826	212295826	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	35	305	0	ENST00000342788.4:c.2488-1G>T		p.X830_splice	ENST00000342788	NM_005235.2	830																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40944623	40944623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	79	349	0	ENST00000373198.4:c.1879G>A	p.Val627Ile	p.V627I	ENST00000373198	NM_133170.3	627	Gtt/Att																																																																															
TET2	54790	MSKCC	GRCh37	4	106193787	106193787	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs749210253		P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	65	379	0	ENST00000380013.4:c.4249G>T	p.Val1417Phe	p.V1417F	ENST00000380013	NM_001127208.2	1417	Gtt/Ttt																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64288432	64288432	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	80	208	0	ENST00000370651.3:c.196C>T	p.Leu66Phe	p.L66F	ENST00000370651	NM_003463.4	66	Ctt/Ttt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978318	2978330	+	frameshift_variant	Frame_Shift_Del	DEL	CTCGCAGCTCCTC	CTCGCAGCTCCTC	-			P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	78	352	0	ENST00000396946.4:c.1000_1012del	p.Glu334ThrfsTer28	p.E334Tfs*28	ENST00000396946	NM_032415.4	334	GAGGAGCTGCGAGac/ac																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946199	13946199	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	72	308	0	ENST00000405192.2:c.897G>T	p.Met299Ile	p.M299I	ENST00000405192	NM_001163147.1	299	atG/atT																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	57	259	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500753	8500753	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	67	352	0	ENST00000356435.5:c.2128+1G>T		p.X710_splice	ENST00000356435		710																																																																																
NTRK2	4915	MSKCC	GRCh37	9	87359956	87359956	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065286-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	71	349	0	ENST00000277120.3:c.1264G>T	p.Val422Phe	p.V422F	ENST00000277120		422	Gtc/Ttc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931588		P-0065291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	223	319	0	ENST00000349496.5:c.94G>A	p.Asp32Asn	p.D32N	ENST00000349496	NM_001904.3	32	Gac/Aac																																																																															
MTOR	2475	MSKCC	GRCh37	1	11298642	11298642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	175	342	0	ENST00000361445.4:c.1819G>A	p.Ala607Thr	p.A607T	ENST00000361445	NM_004958.3	607	Gcg/Acg																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778200	27778200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	216	415	0	ENST00000369163.2:c.349C>T	p.Arg117Trp	p.R117W	ENST00000369163	NM_003536.2	117	Cgg/Tgg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647501	3647511	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGGACACTG	GGAGGACACTG	C			P-0065291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	114	388	0	ENST00000294008.3:c.1552_1562delinsG	p.Gln518ValfsTer16	p.Q518Vfs*16	ENST00000294008	NM_032444.2	518	CAGTGTCCTCCt/Gt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460354	149460354	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1437040009		P-0065324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	63	436	1	ENST00000286301.3:c.283G>A	p.Ala95Thr	p.A95T	ENST00000286301	NM_005211.3	95	Gcc/Acc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376262	225376262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	29	320	0	ENST00000264414.4:c.692C>T	p.Ser231Leu	p.S231L	ENST00000264414	NM_003590.4	231	tCa/tTa																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150915366	150915366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	71	504	0	ENST00000271640.5:c.712G>A	p.Gly238Arg	p.G238R	ENST00000271640	NM_001145415.1	238	Gga/Aga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539957	187539957	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	37	512	0	ENST00000441802.2:c.7783C>G	p.Gln2595Glu	p.Q2595E	ENST00000441802	NM_005245.3	2595	Caa/Gaa																																																																															
MET	4233	MSKCC	GRCh37	7	116412034	116412070	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCCAGAAGGTATATTTCAGTTTATTGTTCTGAGAA	TTTCCAGAAGGTATATTTCAGTTTATTGTTCTGAGAA	GAT			P-0065324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	74	568	1	ENST00000397752.3:c.3019_3028+27delinsGAT		p.X1007_splice	ENST00000397752	NM_000245.2	1007																																																																																
GAB1	2549	MSKCC	GRCh37	4	144359339	144359339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065393-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	38	511	0	ENST00000262994.4:c.781C>A	p.Leu261Met	p.L261M	ENST00000262994	NM_002039.3	261	Ctg/Atg																																																																															
BRAF	673	MSKCC	GRCh37	7	140477834	140477848	+	inframe_deletion	In_Frame_Del	DEL	GTGTAGGTGCTGTCA	GTGTAGGTGCTGTCA	-			P-0065398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	15	361	0	ENST00000288602.6:c.1460_1474del	p.Val487_Pro492delinsAla	p.V487_P492delinsA	ENST00000288602	NM_004333.4	487	gTGACAGCACCTACACct/gct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782177		P-0065406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			790	215	780	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0065406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	97	365	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088718	27088719	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0065406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			723	181	688	0	ENST00000324856.7:c.2329dup	p.Ser777PhefsTer40	p.S777Ffs*40	ENST00000324856	NM_006015.4	776	cct/ccTt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134978	2134978	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746246149		P-0065407-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	264	736	0	ENST00000219476.3:c.4520C>T	p.Ser1507Phe	p.S1507F	ENST00000219476	NM_000548.3	1507	tCc/tTc																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50479160	50479160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065407-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	39	591	0	ENST00000394963.4:c.8C>A	p.Ala3Asp	p.A3D	ENST00000394963	NM_003076.4	3	gCc/gAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162702	47162702	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065407-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	106	427	0	ENST00000409792.3:c.3424del	p.Glu1142LysfsTer12	p.E1142Kfs*12	ENST00000409792	NM_014159.6	1142	Gaa/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0065409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	52	320	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222173	5222173	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	85	564	0	ENST00000357368.4:c.3162G>A	p.Trp1054Ter	p.W1054*	ENST00000357368	NM_002850.3	1054	tgG/tgA																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713271	30713271	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0065409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	68	717	0	ENST00000359013.4:c.671C>G	p.Ser224Ter	p.S224*	ENST00000359013	NM_001024847.2	224	tCa/tGa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715707	30715707	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0065409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	60	561	0	ENST00000359013.4:c.1440G>A	p.Trp480Ter	p.W480*	ENST00000359013	NM_001024847.2	480	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	130	980	0	ENST00000269305.4:c.470T>A	p.Val157Asp	p.V157D	ENST00000269305	NM_001126112.2	157	gTc/gAc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18963068	18963069	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0065425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	102	798	1	ENST00000262803.5:c.935_936delinsCT	p.Leu312Pro	p.L312P	ENST00000262803	NM_002911.3	312	cTG/cCT																																																																															
RB1	5925	MSKCC	GRCh37	13	48923161	48923161	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0034362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			113	337	315	0	ENST00000267163.4:c.607+2T>G		p.X203_splice	ENST00000267163	NM_000321.2	203																																																																																
TP53	7157	MSKCC	GRCh37	17	7577540	7577541	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	A			P-0034362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			274	583	463	0	ENST00000269305.4:c.740_741delinsT	p.Asn247IlefsTer98	p.N247Ifs*98	ENST00000269305	NM_001126112.2	247	aAC/aT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248566	212248566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1210422013		P-0034362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			628	206	605	0	ENST00000342788.4:c.3701A>G	p.Lys1234Arg	p.K1234R	ENST00000342788	NM_005235.2	1234	aAg/aGg																																																																															
FH	2271	MSKCC	GRCh37	1	241676957	241676957	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	298	374	0	ENST00000366560.3:c.324G>C	p.Gln108His	p.Q108H	ENST00000366560	NM_000143.3	108	caG/caC																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154344	2154344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			503	438	614	0	ENST00000434045.2:c.584G>C	p.Gly195Ala	p.G195A	ENST00000434045	NM_001127598.1	195	gGt/gCt																																																																															
CTR9	9646	MSKCC	GRCh37	11	10800494	10800494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			647	193	526	0	ENST00000361367.2:c.3364C>T	p.Arg1122Cys	p.R1122C	ENST00000361367	NM_014633.3	1122	Cgc/Tgc																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944820	31944820	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			915	158	526	0	ENST00000340398.3:c.281A>T	p.Glu94Val	p.E94V	ENST00000340398	NM_001013699.2	94	gAg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424081	49424081	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			571	342	435	0	ENST00000301067.7:c.13981del	p.Ser4661ValfsTer5	p.S4661Vfs*5	ENST00000301067	NM_003482.3	4661	Agt/gt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857253	9857253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			478	587	605	0	ENST00000330684.3:c.4148C>A	p.Pro1383His	p.P1383H	ENST00000330684	NM_001134407.1	1383	cCc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923852	72923852	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			569	160	433	0	ENST00000268489.5:c.3226C>T	p.Gln1076Ter	p.Q1076*	ENST00000268489	NM_006885.3	1076	Cag/Tag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16042344	16042344	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			384	104	357	0	ENST00000268712.3:c.1330G>T	p.Glu444Ter	p.E444*	ENST00000268712	NM_006311.3	444	Gaa/Taa																																																																															
CD79A	973	MSKCC	GRCh37	19	42383305	42383305	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			688	391	583	0	ENST00000221972.3:c.325C>A	p.Gln109Lys	p.Q109K	ENST00000221972	NM_021601.3	109	Cag/Aag																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281945	39281945	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			316	84	303	0	ENST00000402219.2:c.530A>T	p.His177Leu	p.H177L	ENST00000402219	NM_005633.3	177	cAt/cTt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61749764	61749764	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	138	367	0	ENST00000401558.2:c.283C>G	p.Pro95Ala	p.P95A	ENST00000401558	NM_003400.3	95	Cca/Gca																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631459	67631459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			352	448	553	0	ENST00000272342.5:c.1645G>A	p.Asp549Asn	p.D549N	ENST00000272342	NM_019002.3	549	Gat/Aat																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71050212	71050212	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0034362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			502	143	394	0	ENST00000318789.4:c.975-2A>G		p.X325_splice	ENST00000318789	NM_032682.5	325																																																																																
FAT1	2195	MSKCC	GRCh37	4	187525541	187525541	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			247	351	514	0	ENST00000441802.2:c.10538T>C	p.Leu3513Pro	p.L3513P	ENST00000441802	NM_005245.3	3513	cTg/cCg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056154	26056154	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034362-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			832	233	633	0	ENST00000343677.2:c.503A>G	p.Lys168Arg	p.K168R	ENST00000343677	NM_005319.3	168	aAg/aGg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591085	67591085	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519839		P-0065117-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	10	511	0	ENST00000274335.5:c.1678G>T	p.Asp560Tyr	p.D560Y	ENST00000274335		560	Gac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0065117-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	94	299	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs28934873		P-0065117-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	12	621	0	ENST00000269305.4:c.398T>C	p.Met133Thr	p.M133T	ENST00000269305	NM_001126112.2	133	aTg/aCg																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065117-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	234	505	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121604	2121604	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746677177		P-0065117-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	222	626	0	ENST00000219476.3:c.1933G>A	p.Val645Ile	p.V645I	ENST00000219476	NM_000548.3	645	Gtc/Atc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0065117-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	18	355	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0065117-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	9	354	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SDHC	6391	MSKCC	GRCh37	1	161326591	161326591	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065117-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	37	273	0	ENST00000367975.2:c.366C>A	p.Phe122Leu	p.F122L	ENST00000367975	NM_003001.3	122	ttC/ttA																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15989634	15989634	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065117-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	24	506	0	ENST00000268712.3:c.3139G>T	p.Glu1047Ter	p.E1047*	ENST00000268712	NM_006311.3	1047	Gaa/Taa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0065124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	101	315	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0065124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	506	446	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631878	90631878	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1319035463		P-0065124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	121	505	0	ENST00000330062.3:c.475C>T	p.Arg159Cys	p.R159C	ENST00000330062	NM_002168.2	159	Cgc/Tgc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0065124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			74	472	255	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																															
MGA	23269	MSKCC	GRCh37	15	42052636	42052636	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1054243525		P-0065124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	245	428	0	ENST00000219905.7:c.7307G>A	p.Arg2436His	p.R2436H	ENST00000219905	NM_001164273.1	2436	cGt/cAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395158	139395158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	260	492	0	ENST00000277541.6:c.5780C>T	p.Thr1927Met	p.T1927M	ENST00000277541	NM_017617.3	1927	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0065124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	215	290	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720841	89720841	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0065124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	44	116	0	ENST00000371953.3:c.992del	p.Asp331AlafsTer13	p.D331Afs*13	ENST00000371953	NM_000314.4	331	gAc/gc																																																																															
APC	324	MSKCC	GRCh37	5	112173543	112173543	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	246	484	0	ENST00000257430.4:c.2252del	p.Ser751PhefsTer10	p.S751Ffs*10	ENST00000257430	NM_000038.5	751	tCt/tt																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0065130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	31	294	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553578	106553578	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1020395697		P-0065130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	58	502	0	ENST00000369096.4:c.1543G>A	p.Gly515Arg	p.G515R	ENST00000369096	NM_001198.3	515	Ggg/Agg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885263	111885263	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1179360058		P-0065130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	50	559	0	ENST00000341259.2:c.1151A>G	p.Asp384Gly	p.D384G	ENST00000341259	NM_005475.2	384	gAt/gGt																																																																															
UPF1	5976	MSKCC	GRCh37	19	18974294	18974294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	31	489	0	ENST00000262803.5:c.2648C>T	p.Pro883Leu	p.P883L	ENST00000262803	NM_002911.3	883	cCg/cTg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656898	45656898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065130-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	46	548	0	ENST00000407780.3:c.258G>A	p.Met86Ile	p.M86I	ENST00000407780	NM_001283052.1	86	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0065131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	189	454	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	138	415	0	ENST00000342988.3:c.1255G>T	p.Gly419Trp	p.G419W	ENST00000342988	NM_005359.5	419	Ggg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112174430	112174430	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs568149455		P-0065131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	142	493	0	ENST00000257430.4:c.3139G>T	p.Glu1047Ter	p.E1047*	ENST00000257430	NM_000038.5	1047	Gaa/Taa																																																																															
EZH2	2146	MSKCC	GRCh37	7	148543674	148543674	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1260470042		P-0065131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	156	374	0	ENST00000320356.2:c.134A>G	p.Asn45Ser	p.N45S	ENST00000320356	NM_004456.4	45	aAt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578403	+	frameshift_variant	Frame_Shift_Ins	INS	GGGGGC	GGGGGC	AGGGGGA			P-0065131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	129	631	0	ENST00000269305.4:c.527_532delinsTCCCCCT	p.Cys176PhefsTer5	p.C176Ffs*5	ENST00000269305	NM_001126112.2	176	tGCCCCCac/tTCCCCCTac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0065132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	558	326	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006890	47006890	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	234	224	0	ENST00000329236.7:c.10G>T	p.Glu4Ter	p.E4*	ENST00000329236	NM_001204466.1	4	Gaa/Taa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857902	9857902	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			738	96	429	0	ENST00000330684.3:c.3499A>G	p.Met1167Val	p.M1167V	ENST00000330684	NM_001134407.1	1167	Atg/Gtg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162741999	162741999	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	44	642	0	ENST00000367921.3:c.1690A>T	p.Thr564Ser	p.T564S	ENST00000367921	NM_006182.2	564	Act/Tct																																																																															
AXIN1	8312	MSKCC	GRCh37	16	359980	359980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	84	595	0	ENST00000262320.3:c.1109A>G	p.His370Arg	p.H370R	ENST00000262320	NM_003502.3	370	cAc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0065175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1027	90	718	0	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73774786	73774786	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			875	72	564	0	ENST00000254810.4:c.301C>G	p.Leu101Val	p.L101V	ENST00000254810	NM_005324.3	101	Ctg/Gtg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11030275	11030275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			746	70	617	0	ENST00000327064.4:c.1025C>T	p.Thr342Ile	p.T342I	ENST00000327064	NM_199141.1	342	aCa/aTa																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422637	47422637	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	73	617	0	ENST00000404338.3:c.705C>A	p.Asn235Lys	p.N235K	ENST00000404338	NM_004491.4	235	aaC/aaA																																																																															
MST1R	4486	MSKCC	GRCh37	3	49932906	49932906	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759642387		P-0065175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			996	96	706	0	ENST00000296474.3:c.3038C>T	p.Ser1013Leu	p.S1013L	ENST00000296474	NM_002447.2	1013	tCg/tTg																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799656	72799656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	36	637	0	ENST00000325599.8:c.1513G>A	p.Val505Ile	p.V505I	ENST00000325599	NM_018130.2	505	Gtt/Att																																																																															
REST	5978	MSKCC	GRCh37	4	57796747	57796747	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	23	613	0	ENST00000309042.7:c.1723A>T	p.Met575Leu	p.M575L	ENST00000309042	NM_005612.4	575	Atg/Ttg																																																																															
ALB	213	MSKCC	GRCh37	4	74272392	74272392	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			79	10	479	0	ENST00000295897.4:c.184G>T	p.Asp62Tyr	p.D62Y	ENST00000295897	NM_000477.5	62	Gat/Tat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538307	187538307	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	11	564	0	ENST00000441802.2:c.8927G>T	p.Trp2976Leu	p.W2976L	ENST00000441802	NM_005245.3	2976	tGg/tTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539378	187539378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	30	708	0	ENST00000441802.2:c.8362G>A	p.Glu2788Lys	p.E2788K	ENST00000441802	NM_005245.3	2788	Gag/Aag																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250439	26250439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1122	80	749	0	ENST00000446824.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000446824	NM_021018.2	132	cGc/cTc																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346448	152346448	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0065175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	18	509	0	ENST00000359321.1:c.122G>C	p.Gly41Ala	p.G41A	ENST00000359321	NM_005431.1	41	gGt/gCt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370847	55370847	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			738	43	587	0	ENST00000297316.4:c.149C>A	p.Ala50Glu	p.A50E	ENST00000297316	NM_022454.3	50	gCg/gAg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054648	5054648	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765286468		P-0065175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	14	588	0	ENST00000381652.3:c.700C>T	p.Arg234Cys	p.R234C	ENST00000381652	NM_004972.3	234	Cgc/Tgc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486320	8486320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	40	468	1	ENST00000356435.5:c.2497C>A	p.His833Asn	p.H833N	ENST00000356435		833	Cac/Aac																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53253924	53253924	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0065175-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			742	54	546	1	ENST00000375401.3:c.148G>T	p.Ala50Ser	p.A50S	ENST00000375401	NM_004187.3	50	Gcg/Tcg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115982	8115983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0065176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	292	616	0	ENST00000346208.3:c.1330dup	p.Ter444LeufsTer63	p.*444Lfs*63	ENST00000346208		443	ggt/ggTt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0065179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	190	456	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450366	50450366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	274	629	0	ENST00000331340.3:c.550C>T	p.Arg184Trp	p.R184W	ENST00000331340	NM_006060.4	184	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175225	112175225	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	268	556	0	ENST00000257430.4:c.3935del	p.Gly1312GlufsTer9	p.G1312Efs*9	ENST00000257430	NM_000038.5	1312	Gga/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7572991	7572991	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	411	617	1	ENST00000269305.4:c.1118del	p.Lys373ArgfsTer49	p.K373Rfs*49	ENST00000269305	NM_001126112.2	373	aAg/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0065179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	217	368	3	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94224109	94224109	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	153	323	1	ENST00000323929.3:c.43A>G	p.Ile15Val	p.I15V	ENST00000323929	NM_005591.3	15	Ata/Gta																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233429	69233429	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	319	643	1	ENST00000462284.1:c.1294G>T	p.Val432Leu	p.V432L	ENST00000462284	NM_002392.5	432	Gtg/Ttg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900991	3900991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	244	457	0	ENST00000262367.5:c.105C>A	p.Asp35Glu	p.D35E	ENST00000262367	NM_004380.2	35	gaC/gaA																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275120	41275120	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065179-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	358	651	2	ENST00000349496.5:c.1286G>C	p.Cys429Ser	p.C429S	ENST00000349496	NM_001904.3	429	tGc/tCc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346338	73346338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065312-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	9	291	0	ENST00000377767.4:c.1462G>A	p.Asp488Asn	p.D488N	ENST00000377767	NM_014953.3	488	Gat/Aat																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500635	99500635	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065312-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	34	424	0	ENST00000268035.6:c.4068G>C	p.Glu1356Asp	p.E1356D	ENST00000268035	NM_000875.3	1356	gaG/gaC																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149437070	149437070	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065312-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	28	402	0	ENST00000286301.3:c.2218C>A	p.Gln740Lys	p.Q740K	ENST00000286301	NM_005211.3	740	Caa/Aaa																																																																															
IRF4	3662	MSKCC	GRCh37	6	398831	398831	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065312-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	26	335	0	ENST00000380956.4:c.641G>C	p.Cys214Ser	p.C214S	ENST00000380956	NM_001195286.1	214	tGc/tCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0065314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	97	507	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMO	6608	MSKCC	GRCh37	7	128845574	128845574	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1405848770		P-0065314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	24	477	1	ENST00000249373.3:c.871C>T	p.Arg291Ter	p.R291*	ENST00000249373	NM_005631.4	291	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0065314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	84	290	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416706	121416706	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	107	497	0	ENST00000257555.6:c.135del	p.Asp45GlufsTer110	p.D45Efs*110	ENST00000257555		45	gaC/ga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119690	70119690	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	56	441	0	ENST00000245479.2:c.694del	p.Gln232ArgfsTer21	p.Q232Rfs*21	ENST00000245479	NM_000346.3	231	tCc/tc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532650	187532650	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	67	466	0	ENST00000441802.2:c.9743A>G	p.Glu3248Gly	p.E3248G	ENST00000441802	NM_005245.3	3248	gAa/gGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0065316-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	30	271	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971077	21971078	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGT			P-0065316-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	50	400	0	ENST00000304494.5:c.277_280dup	p.Leu94HisfsTer27	p.L94Hfs*27	ENST00000304494	NM_000077.4	94	ctg/cACGCtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578486	7578488	+	frameshift_variant	Frame_Shift_Del	DEL	ATC	ATC	T			P-0065316-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	88	489	0	ENST00000269305.4:c.442_444delinsA	p.Asp148IlefsTer32	p.D148Ifs*32	ENST00000269305	NM_001126112.2	148	GAT/A																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097859	8097859	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0055220-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	127	543	0	ENST00000346208.3:c.241G>A	p.Gly81Arg	p.G81R	ENST00000346208		81	Ggg/Agg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111495	8111496	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGA			P-0063740-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			399	211	532	0	ENST00000346208.3:c.982_985dup	p.Arg329MetfsTer24	p.R329Mfs*24	ENST00000346208		327	-/TGGA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241726	55241726	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767505234		P-0063740-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			272	122	479	0	ENST00000275493.2:c.2174C>T	p.Thr725Met	p.T725M	ENST00000275493	NM_005228.3	725	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520008		P-0063950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			297	440	644	2	ENST00000269305.4:c.613T>G	p.Tyr205Asp	p.Y205D	ENST00000269305	NM_001126112.2	205	Tat/Gat																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731479	47731479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			386	266	533	0	ENST00000449228.1:c.313C>T	p.Arg105Cys	p.R105C	ENST00000449228	NM_001127240.2	105	Cgc/Tgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720815	89720817	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	AAA	AAA	GTAAATT			P-0063950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			89	75	153	0	ENST00000371953.3:c.966_968delinsGTAAATT	p.Asn323Ter	p.N323*	ENST00000371953	NM_000314.4	322	aaAAAt/aaGTAAATTt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919006	50919024	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCCCAGCCTGGGCGACC	GCGCCCAGCCTGGGCGACC	-			P-0063950-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			621	67	504	0	ENST00000440232.2:c.2746_2764del	p.Pro916SerfsTer4	p.P916Sfs*4	ENST00000440232	NM_002691.3	915	GCGCCCAGCCTGGGCGACCgc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs483352695		P-0064005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	177	427	0	ENST00000269305.4:c.736A>T	p.Met246Leu	p.M246L	ENST00000269305	NM_001126112.2	246	Atg/Ttg																																																																															
TEK	7010	MSKCC	GRCh37	9	27168540	27168540	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1213348161		P-0064005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	70	367	0	ENST00000380036.4:c.412A>G	p.Asn138Asp	p.N138D	ENST00000380036	NM_000459.3	138	Aac/Gac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0064502-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			669	160	495	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0064502-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			579	242	516	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98242287	98242287	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758585782		P-0064502-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			576	48	535	0	ENST00000331920.6:c.1031G>A	p.Gly344Asp	p.G344D	ENST00000331920	NM_000264.3	344	gGt/gAt																																																																															
ATM	472	MSKCC	GRCh37	11	108141989	108141989	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1449057707		P-0064502-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			280	48	388	0	ENST00000278616.4:c.2933C>T	p.Ser978Phe	p.S978F	ENST00000278616	NM_000051.3	978	tCt/tTt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229653	5229653	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064502-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			406	85	462	3	ENST00000357368.4:c.2198A>G	p.Asn733Ser	p.N733S	ENST00000357368	NM_002850.3	733	aAc/aGc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81554312	81554313	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTA			P-0064559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	10	459	0	ENST00000298171.2:c.332_333insTTA	p.Thr111_Arg112insTyr	p.T111_R112insY	ENST00000298171	NM_000369.2	111	acc/acTTAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882000		P-0064559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	8	824	0	ENST00000269305.4:c.475G>A	p.Ala159Thr	p.A159T	ENST00000269305	NM_001126112.2	159	Gcc/Acc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15973710	15973710	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	13	688	0	ENST00000268712.3:c.4282A>G	p.Lys1428Glu	p.K1428E	ENST00000268712	NM_006311.3	1428	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0064742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	135	342	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0064742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	164	345	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
ACVR1	90	MSKCC	GRCh37	2	158626964	158626964	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	76	358	0	ENST00000263640.3:c.706A>T	p.Ile236Phe	p.I236F	ENST00000263640	NM_001105.4	236	Atc/Ttc																																																																															
NBN	4683	MSKCC	GRCh37	8	90983514	90983514	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0064742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	63	226	0	ENST00000265433.3:c.589del	p.Tyr197ThrfsTer34	p.Y197Tfs*34	ENST00000265433	NM_002485.4	197	Tac/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0064917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	151	639	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150933643	150933646	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0064917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	92	473	0	ENST00000271640.5:c.3106_3109del	p.Asp1036SerfsTer17	p.D1036Sfs*17	ENST00000271640	NM_001145415.1	1035	ggAGAC/gg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423659	88423659	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0064917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	84	474	0	ENST00000360948.2:c.2176G>T	p.Val726Leu	p.V726L	ENST00000360948	NM_001012338.2	726	Gtg/Ttg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50816277	50816277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	83	355	0	ENST00000398568.2:c.1717C>T	p.Pro573Ser	p.P573S	ENST00000398568	NM_001042412.1	573	Cca/Tca																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135082	11135083	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGCT			P-0064917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	97	529	0	ENST00000344626.4:c.3050_3053dup	p.Thr1019AlafsTer3	p.T1019Afs*3	ENST00000344626	NM_003072.3	1017	ctg/cTGCTtg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971159	21971162	+	frameshift_variant	Frame_Shift_Del	DEL	CGTG	CGTG	-			P-0064917-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	144	679	0	ENST00000304494.5:c.196_199del	p.His66AlafsTer79	p.H66Afs*79	ENST00000304494	NM_000077.4	66	CACGgc/gc																																																																															
ATM	472	MSKCC	GRCh37	11	108159816	108159816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064933-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			124	13	89	0	ENST00000278616.4:c.4222C>G	p.Leu1408Val	p.L1408V	ENST00000278616	NM_000051.3	1408	Ctt/Gtt																																																																															
CCND2	894	MSKCC	GRCh37	12	4398021	4398022	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0064933-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			265	45	450	0	ENST00000261254.3:c.585_586delinsAT	p.Met196Leu	p.M196L	ENST00000261254	NM_001759.3	195	gcCAtg/gcATtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0064933-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			287	482	330	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865755	57865755	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064933-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			466	222	599	0	ENST00000228682.2:c.3232T>A	p.Ser1078Thr	p.S1078T	ENST00000228682	NM_005269.2	1078	Tct/Act																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145018	58145018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064933-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			526	226	587	0	ENST00000257904.6:c.326C>T	p.Pro109Leu	p.P109L	ENST00000257904	NM_000075.3	109	cCa/cTa																																																																															
POLE	5426	MSKCC	GRCh37	12	133202722	133202722	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064933-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			586	192	566	0	ENST00000320574.5:c.6512A>T	p.Lys2171Ile	p.K2171I	ENST00000320574	NM_006231.2	2171	aAa/aTa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068993	30068993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064933-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			396	142	366	0	ENST00000331968.5:c.1936G>A	p.Glu646Lys	p.E646K	ENST00000331968	NM_002742.2	646	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0064933-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			277	174	500	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222191	2222191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064933-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	240	641	0	ENST00000398665.3:c.3023C>T	p.Ser1008Phe	p.S1008F	ENST00000398665	NM_032482.2	1008	tCc/tTc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023328	31023328	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064933-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			398	195	506	0	ENST00000375687.4:c.2813C>G	p.Pro938Arg	p.P938R	ENST00000375687	NM_015338.5	938	cCt/cGt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205731	128205731	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064933-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			352	105	584	0	ENST00000341105.2:c.144C>G	p.Phe48Leu	p.F48L	ENST00000341105	NM_032638.4	48	ttC/ttG																																																																															
ATR	545	MSKCC	GRCh37	3	142278153	142278153	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064933-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			406	136	418	0	ENST00000350721.4:c.1672G>C	p.Asp558His	p.D558H	ENST00000350721	NM_001184.3	558	Gac/Cac																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189503	56189503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064933-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			367	80	440	0	ENST00000399503.3:c.4535G>T	p.Trp1512Leu	p.W1512L	ENST00000399503	NM_005921.1	1512	tGg/tTg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131894975	131894975	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs876658784		P-0064933-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			169	50	217	0	ENST00000265335.6:c.130-1G>T		p.X44_splice	ENST00000265335		44																																																																																
PMS2	5395	MSKCC	GRCh37	7	6035208	6035208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064933-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			611	129	555	0	ENST00000265849.7:c.860G>T	p.Arg287Ile	p.R287I	ENST00000265849	NM_000535.5	287	aGa/aTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132751	152132751	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064933-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			290	28	302	0	ENST00000262189.6:c.121C>G	p.Arg41Gly	p.R41G	ENST00000262189	NM_170606.2	41	Cgc/Ggc																																																																															
HGF	3082	MSKCC	GRCh37	7	81335040	81335040	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751819844		P-0064940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			495	173	393	0	ENST00000222390.5:c.1787C>T	p.Thr596Met	p.T596M	ENST00000222390	NM_000601.4	596	aCg/aTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42053955	42053955	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0064940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			322	182	400	0	ENST00000219905.7:c.7417G>T	p.Gly2473Ter	p.G2473*	ENST00000219905	NM_001164273.1	2473	Gga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280125	66280125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			629	121	448	0	ENST00000273854.3:c.1564G>A	p.Glu522Lys	p.E522K	ENST00000273854	NM_004439.5	522	Gag/Aag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217255	66217255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			574	141	445	0	ENST00000273854.3:c.2360G>T	p.Gly787Val	p.G787V	ENST00000273854	NM_004439.5	787	gGa/gTa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118372434	118372434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			416	418	492	0	ENST00000534358.1:c.6367C>T	p.Pro2123Ser	p.P2123S	ENST00000534358	NM_005933.3	2123	Cca/Tca																																																																															
ATRX	546	MSKCC	GRCh37	X	76937683	76937683	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781811015		P-0064940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			710	121	466	0	ENST00000373344.5:c.3065G>A	p.Arg1022Gln	p.R1022Q	ENST00000373344	NM_000489.3	1022	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0064940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			249	526	306	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48018140	48018140	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587779934		P-0064940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			747	143	452	0	ENST00000234420.5:c.335A>G	p.Asn112Ser	p.N112S	ENST00000234420	NM_000179.2	112	aAc/aGc																																																																															
KIT	3815	MSKCC	GRCh37	4	55593681	55593681	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0064940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			523	126	420	0	ENST00000288135.5:c.1747G>T	p.Glu583Ter	p.E583*	ENST00000288135	NM_000222.2	583	Gag/Tag																																																																															
ID3	3399	MSKCC	GRCh37	1	23885854	23885854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			496	128	416	0	ENST00000374561.5:c.64C>A	p.Leu22Met	p.L22M	ENST00000374561	NM_002167.4	22	Ctg/Atg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864175	57864175	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			615	160	538	0	ENST00000228682.2:c.1652C>A	p.Ser551Tyr	p.S551Y	ENST00000228682	NM_005269.2	551	tCt/tAt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28919684	28919685	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0064940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			422	104	397	0	ENST00000282397.4:c.2252_2253delinsAA	p.Thr751Lys	p.T751K	ENST00000282397	NM_002019.4	751	aCC/aAA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577499	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0064940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			402	264	418	0	ENST00000269305.4:c.782_782+1delinsTT		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
YES1	7525	MSKCC	GRCh37	18	724571	724571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	130	258	0	ENST00000314574.4:c.1485G>T	p.Gln495His	p.Q495H	ENST00000314574	NM_005433.3	495	caG/caT																																																																															
EP300	2033	MSKCC	GRCh37	22	41523511	41523511	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			490	120	438	0	ENST00000263253.7:c.927G>T	p.Gln309His	p.Q309H	ENST00000263253	NM_001429.3	309	caG/caT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125320	47125320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			538	115	470	0	ENST00000409792.3:c.5950G>A	p.Glu1984Lys	p.E1984K	ENST00000409792	NM_014159.6	1984	Gag/Aag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960059	134960059	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			583	268	542	0	ENST00000398015.3:c.2416G>T	p.Asp806Tyr	p.D806Y	ENST00000398015	NM_004441.4	806	Gac/Tac																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430204	181430204	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1227940600		P-0064940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			605	118	405	0	ENST00000325404.1:c.56G>T	p.Gly19Val	p.G19V	ENST00000325404	NM_003106.3	19	gGg/gTg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748126	41748126	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1243150447		P-0064940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			526	106	424	0	ENST00000226382.2:c.643G>T	p.Gly215Cys	p.G215C	ENST00000226382	NM_003924.3	215	Ggc/Tgc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524324	176524324	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			602	211	523	0	ENST00000292408.4:c.2185G>T	p.Ala729Ser	p.A729S	ENST00000292408	NM_213647.1	729	Gcg/Tcg																																																																															
LYN	4067	MSKCC	GRCh37	8	56922625	56922625	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			700	128	505	0	ENST00000519728.1:c.1495G>T	p.Asp499Tyr	p.D499Y	ENST00000519728	NM_002350.3	499	Gat/Tat																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0064941-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			145	12	149	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535409	66535409	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768337164		P-0064941-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			662	37	542	0	ENST00000273854.3:c.52G>A	p.Gly18Ser	p.G18S	ENST00000273854	NM_004439.5	18	Ggc/Agc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101300	27101300	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064941-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1022	64	744	0	ENST00000324856.7:c.4582C>T	p.Arg1528Ter	p.R1528*	ENST00000324856	NM_006015.4	1528	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28929495		P-0064941-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			551	322	524	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0064941-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			683	413	644	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0064948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	4873	470	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55233043	55233043	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs139236063		P-0064948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			5808	148	459	0	ENST00000275493.2:c.1793G>T	p.Gly598Val	p.G598V	ENST00000275493	NM_005228.3	598	gGa/gTa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627889	37627889	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	71	557	1	ENST00000447079.4:c.1804C>T	p.Gln602Ter	p.Q602*	ENST00000447079	NM_015083.1	602	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7590694	7590694	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0064948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	314	490	0	ENST00000269305.4:c.-29+1G>A		p.X10_splice	ENST00000269305	NM_001126112.2	10																																																																																
RB1	5925	MSKCC	GRCh37	13	48954342	48954342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064948-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	60	284	0	ENST00000267163.4:c.1463C>A	p.Ala488Glu	p.A488E	ENST00000267163	NM_000321.2	488	gCg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398123121		P-0064950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	294	606	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	94	527	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117642	70117642	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	515	921	0	ENST00000245479.2:c.110C>A	p.Ser37Ter	p.S37*	ENST00000245479	NM_000346.3	37	tCg/tAg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417853	138417853	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	112	441	0	ENST00000289153.2:c.1666G>C	p.Asp556His	p.D556H	ENST00000289153	NM_006219.2	556	Gat/Cat																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153253774	153253776	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0064950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	86	418	0	ENST00000281708.4:c.957_959del	p.Leu320del	p.L320del	ENST00000281708	NM_033632.3	319	ctTCTc/ctc																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0064954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	106	433	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112154963	112154963	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660802		P-0064954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	127	634	1	ENST00000257430.4:c.1234C>T	p.Gln412Ter	p.Q412*	ENST00000257430	NM_000038.5	412	Cag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332919	153332919	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs781123562		P-0064954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	229	659	4	ENST00000281708.4:c.37C>T	p.Arg13Ter	p.R13*	ENST00000281708	NM_033632.3	13	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0064954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	303	447	4	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50785724	50785724	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	204	481	2	ENST00000398568.2:c.714G>T	p.Leu238Phe	p.L238F	ENST00000398568	NM_001042412.1	238	ttG/ttT																																																																															
EP300	2033	MSKCC	GRCh37	22	41560067	41560075	+	inframe_deletion	In_Frame_Del	DEL	TGTACAGAG	TGTACAGAG	-			P-0064954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	85	470	0	ENST00000263253.7:c.3741_3749del	p.Thr1248_Cys1250del	p.T1248_C1250del	ENST00000263253	NM_001429.3	1247	TGTACAGAG/-																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439885	52439885	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	286	730	2	ENST00000460680.1:c.827C>G	p.Ser276Cys	p.S276C	ENST00000460680	NM_004656.3	276	tCt/tGt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729573	41729573	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	304	862	2	ENST00000242208.4:c.956A>G	p.Asn319Ser	p.N319S	ENST00000242208	NM_002192.2	319	aAc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064958-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	219	661	0	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0064958-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	142	406	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
CBL	867	MSKCC	GRCh37	11	119148891	119148891	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs267606706		P-0064958-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	16	367	3	ENST00000264033.4:c.1111T>C	p.Tyr371His	p.Y371H	ENST00000264033	NM_005188.3	371	Tac/Cac																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950066	38950066	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1297105779		P-0064958-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	197	600	0	ENST00000357387.3:c.3884C>T	p.Thr1295Met	p.T1295M	ENST00000357387	NM_152756.3	1295	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064958-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	178	325	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346894	73346894	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0064996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	213	505	0	ENST00000377767.4:c.1323T>G	p.His441Gln	p.H441Q	ENST00000377767	NM_014953.3	441	caT/caG																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983308	15983308	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0064996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	239	545	0	ENST00000268712.3:c.3471del	p.Ser1157ArgfsTer27	p.S1157Rfs*27	ENST00000268712	NM_006311.3	1157	agC/ag																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111854391		P-0064998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	15	188	0	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg																																																																															
ATM	472	MSKCC	GRCh37	11	108186756	108186756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	18	203	0	ENST00000278616.4:c.6114C>A	p.His2038Gln	p.H2038Q	ENST00000278616	NM_000051.3	2038	caC/caA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061185	38061205	+	inframe_deletion	In_Frame_Del	DEL	GCACTTGAAGCGCTTCTGGCG	GCACTTGAAGCGCTTCTGGCG	-			P-0064998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	81	726	0	ENST00000250448.2:c.784_804del	p.Arg262_Cys268del	p.R262_C268del	ENST00000250448	NM_004496.3	262	CGCCAGAAGCGCTTCAAGTGC/-																																																																															
APC	324	MSKCC	GRCh37	5	112178803	112178803	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	25	275	0	ENST00000257430.4:c.7512G>A	p.Trp2504Ter	p.W2504*	ENST00000257430	NM_000038.5	2504	tgG/tgA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685315	89685315	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs876658153		P-0065000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			50	60	238	0	ENST00000371953.3:c.209+1G>T		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																																
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0065000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	293	742	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																															
STK11	6794	MSKCC	GRCh37	19	1219336	1219336	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	170	748	0	ENST00000326873.7:c.388G>T	p.Glu130Ter	p.E130*	ENST00000326873	NM_000455.4	130	Gag/Tag																																																																															
RB1	5925	MSKCC	GRCh37	13	49033825	49033826	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0065000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	148	509	0	ENST00000267163.4:c.1963dup	p.Tyr655LeufsTer13	p.Y655Lfs*13	ENST00000267163	NM_000321.2	654	-/T																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647636	3647636	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	20	721	0	ENST00000294008.3:c.1427C>G	p.Ser476Cys	p.S476C	ENST00000294008	NM_032444.2	476	tCt/tGt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602913	10602913	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	236	665	0	ENST00000171111.5:c.665A>T	p.Asn222Ile	p.N222I	ENST00000171111	NM_203500.1	222	aAc/aTc																																																																															
MGA	23269	MSKCC	GRCh37	15	42040958	42040959	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0065000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	146	732	0	ENST00000219905.7:c.5341_5342del	p.Gln1781ThrfsTer12	p.Q1781Tfs*12	ENST00000219905	NM_001164273.1	1779	aAC/a																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602859	10602859	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	269	816	0	ENST00000171111.5:c.719G>C	p.Arg240Pro	p.R240P	ENST00000171111	NM_203500.1	240	cGc/cCc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432453	49432453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	112	803	0	ENST00000301067.7:c.8686C>T	p.Pro2896Ser	p.P2896S	ENST00000301067	NM_003482.3	2896	Cct/Tct																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1959723	1959723	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	83	594	0	ENST00000382895.3:c.2945A>T	p.Gln982Leu	p.Q982L	ENST00000382895	NM_133330.2	982	cAg/cTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970930	79970930	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	71	508	0	ENST00000265081.6:c.1156A>T	p.Ile386Phe	p.I386F	ENST00000265081	NM_002439.4	386	Att/Ttt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562332	176562332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	93	708	0	ENST00000439151.2:c.228G>T	p.Gln76His	p.Q76H	ENST00000439151	NM_022455.4	76	caG/caT																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091828	29091828	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			61	70	295	0	ENST00000328354.6:c.1129del	p.Glu377ArgfsTer5	p.E377Rfs*5	ENST00000328354	NM_007194.3	377	Gag/ag																																																																															
B2M	567	MSKCC	GRCh37	15	45003747	45003749	+	start_lost	Translation_Start_Site	ONP	GTC	GTC	ATT			P-0065000-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	91	643	0	ENST00000558401.1:c.3_5delinsATT	p.MetSer1_?2	p.MS1_?2	ENST00000558401	NM_004048.2	1	atGTCt/atATTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0065098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	16	80	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0065098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	19	112	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0065098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	123	208	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0065098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	69	171	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0065101-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	20	276	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579400	7579400	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065101-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			729	167	339	0	ENST00000269305.4:c.287del	p.Ser96LeufsTer27	p.S96Lfs*27	ENST00000269305	NM_001126112.2	96	tCt/tt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540654		P-0065101-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	146	320	0	ENST00000269305.4:c.329G>A	p.Arg110His	p.R110H	ENST00000269305	NM_001126112.2	110	cGt/cAt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944160	71944160	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201836862		P-0065101-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			716	77	367	0	ENST00000298229.2:c.1993C>T	p.Arg665Trp	p.R665W	ENST00000298229	NM_001567.3	665	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105745	27105745	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065101-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	58	318	0	ENST00000324856.7:c.5356G>T	p.Glu1786Ter	p.E1786*	ENST00000324856	NM_006015.4	1786	Gag/Tag																																																																															
PAK1	5058	MSKCC	GRCh37	11	77047135	77047135	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065101-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	56	258	0	ENST00000356341.3:c.1409T>C	p.Leu470Pro	p.L470P	ENST00000356341	NM_002576.4	470	cTg/cCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0065101-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	18	196	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0065104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	10	349	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
STK40	83931	MSKCC	GRCh37	1	36809519	36809519	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	23	337	0	ENST00000373129.3:c.946C>G	p.Gln316Glu	p.Q316E	ENST00000373129	NM_032017.1	316	Cag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0065134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			769	36	694	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0065134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	16	390	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0065135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	104	315	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023621	27023622	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	TA			P-0065135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	60	469	0	ENST00000324856.7:c.727_728delinsTA	p.Ala243Ter	p.A243*	ENST00000324856	NM_006015.4	243	GCg/TAg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008307	29008307	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	81	429	0	ENST00000282397.4:c.564T>A	p.Ser188Arg	p.S188R	ENST00000282397	NM_002019.4	188	agT/agA																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986948	36986951	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	TTT			P-0065135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	59	463	2	ENST00000354822.5:c.738_741delinsAAA	p.Met246IlefsTer49	p.M246Ifs*49	ENST00000354822	NM_001079668.2	246	atGAAG/atAAA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0065136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	68	458	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
RARA	5914	MSKCC	GRCh37	17	38508177	38508177	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749735817		P-0065136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	21	471	0	ENST00000254066.5:c.485G>A	p.Arg162Gln	p.R162Q	ENST00000254066	NM_000964.3	162	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0065136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	48	278	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670702	134670703	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0065136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	76	541	0	ENST00000398015.3:c.615_616del	p.Phe206SerfsTer54	p.F206Sfs*54	ENST00000398015	NM_004441.4	205	GTg/g																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974755	21974777	+	frameshift_variant	Frame_Shift_Del	DEL	CCGACCCCGGGCCGCGGCCGTGG	CCGACCCCGGGCCGCGGCCGTGG	-			P-0065136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	99	525	0	ENST00000304494.5:c.50_72del	p.Ala17GlyfsTer19	p.A17Gfs*19	ENST00000304494	NM_000077.4	17	gCCACGGCCGCGGCCCGGGGTCGG/g																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419922	41419922	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065139-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			733	76	512	0	ENST00000373198.4:c.399C>A	p.Asn133Lys	p.N133K	ENST00000373198	NM_133170.3	133	aaC/aaA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105907	27105907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	213	507	0	ENST00000324856.7:c.5518G>A	p.Gly1840Ser	p.G1840S	ENST00000324856	NM_006015.4	1840	Ggc/Agc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720670	89720670	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	32	162	0	ENST00000371953.3:c.821G>C	p.Trp274Ser	p.W274S	ENST00000371953	NM_000314.4	274	tGg/tCg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639917	3639917	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773723496		P-0065141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	188	503	0	ENST00000294008.3:c.3722G>A	p.Arg1241His	p.R1241H	ENST00000294008	NM_032444.2	1241	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576938	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTAGGAAAGAGG	CTAGGAAAGAGG	GG			P-0065141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	243	593	0	ENST00000269305.4:c.920-10_920-1del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0065142-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	282	583	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29007999	29007999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065142-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	70	445	1	ENST00000282397.4:c.770C>T	p.Pro257Leu	p.P257L	ENST00000282397	NM_002019.4	257	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0065143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	91	646	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																															
ATRX	546	MSKCC	GRCh37	X	76937694	76937694	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	44	591	0	ENST00000373344.5:c.3054G>T	p.Lys1018Asn	p.K1018N	ENST00000373344	NM_000489.3	1018	aaG/aaT																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265313	152265313	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	27	491	0	ENST00000206249.3:c.766C>T	p.Arg256Ter	p.R256*	ENST00000206249	NM_000125.3	256	Cga/Tga																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453361	40453361	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372745237		P-0065143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	31	575	0	ENST00000345506.4:c.1058G>A	p.Arg353His	p.R353H	ENST00000345506	NM_003152.3	353	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0065143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	123	354	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974681	21974682	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCGG			P-0065143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	58	663	0	ENST00000304494.5:c.142_145dup	p.Ile49ThrfsTer72	p.I49Tfs*72	ENST00000304494	NM_000077.4	49	atc/aCCGAtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0065170-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	87	482	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0065170-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	55	331	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427735	72427735	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065170-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	93	438	0	ENST00000477973.2:c.753T>G	p.Val252Gly	p.V252G	ENST00000477973	NM_012234.5	252	gTg/gGg																																																																															
TP63	8626	MSKCC	GRCh37	3	189455578	189455578	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065170-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	108	450	0	ENST00000264731.3:c.112T>A	p.Ser38Thr	p.S38T	ENST00000264731	NM_003722.4	38	Tcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0065184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	10	303	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0065186-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	250	479	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0065186-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	236	437	0	ENST00000257430.4:c.4037C>G	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tGa																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2493255	2493255	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0065186-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	32	375	0	ENST00000355716.4:c.694+1G>T		p.X232_splice	ENST00000355716	NM_003820.2	232																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114912198	114912198	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0065186-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	89	331	0	ENST00000543371.1:c.1268A>G	p.Tyr423Cys	p.Y423C	ENST00000543371	NM_001198531.1	423	tAt/tGt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212257	5212257	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs571743236		P-0065186-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	263	580	0	ENST00000357368.4:c.4774G>A	p.Gly1592Ser	p.G1592S	ENST00000357368	NM_002850.3	1592	Ggt/Agt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0065188-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	172	431	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0065188-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	213	507	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065188-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	233	497	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256532	115256532	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065188-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	203	442	0	ENST00000369535.4:c.179G>T	p.Gly60Val	p.G60V	ENST00000369535	NM_002524.4	60	gGa/gTa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692881	89692881	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065188-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	127	231	0	ENST00000371953.3:c.365T>C	p.Ile122Thr	p.I122T	ENST00000371953	NM_000314.4	122	aTt/aCt																																																																															
CYLD	1540	MSKCC	GRCh37	16	50810132	50810132	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065188-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	174	462	0	ENST00000398568.2:c.956T>A	p.Met319Lys	p.M319K	ENST00000398568	NM_001042412.1	319	aTg/aAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212407	5212407	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065188-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	250	662	0	ENST00000357368.4:c.4710C>A	p.Phe1570Leu	p.F1570L	ENST00000357368	NM_002850.3	1570	ttC/ttA																																																																															
APC	324	MSKCC	GRCh37	5	112137081	112137081	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0065188-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	115	291	0	ENST00000257430.4:c.834+1G>T		p.X278_splice	ENST00000257430	NM_000038.5	278																																																																																
NFE2L2	4780	MSKCC	GRCh37	2	178095836	178095836	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1328262363		P-0065190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	22	596	0	ENST00000397062.3:c.1495C>T	p.Arg499Trp	p.R499W	ENST00000397062	NM_006164.4	499	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108235935	108235935	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs770641163		P-0065190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	122	530	0	ENST00000278616.4:c.8977C>T	p.Arg2993Ter	p.R2993*	ENST00000278616	NM_000051.3	2993	Cga/Tga																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950756	38950756	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199854036		P-0065190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	85	465	0	ENST00000357387.3:c.3194A>G	p.Asn1065Ser	p.N1065S	ENST00000357387	NM_152756.3	1065	aAt/aGt																																																																															
AR	367	MSKCC	GRCh37	X	66766432	66766432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			59	69	214	0	ENST00000374690.3:c.1444G>A	p.Gly482Ser	p.G482S	ENST00000374690	NM_000044.3	482	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0065190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	89	376	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TOP1	7150	MSKCC	GRCh37	20	39750672	39750672	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	32	312	0	ENST00000361337.2:c.2072T>C	p.Val691Ala	p.V691A	ENST00000361337	NM_003286.2	691	gTt/gCt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223880	53223880	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	21	334	0	ENST00000375401.3:c.3479del	p.Gly1160ValfsTer104	p.G1160Vfs*104	ENST00000375401	NM_004187.3	1160	gGt/gt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0065191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	17	524	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0065191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	145	777	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287412	46287412	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0065191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	173	485	1	ENST00000334344.6:c.5272-1G>T		p.X1758_splice	ENST00000334344	NM_152641.2	1758																																																																																
JAK3	3718	MSKCC	GRCh37	19	17948832	17948832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	230	668	0	ENST00000458235.1:c.1610G>T	p.Arg537Leu	p.R537L	ENST00000458235	NM_000215.3	537	cGg/cTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111485	8111485	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			716	215	641	0	ENST00000346208.3:c.971C>A	p.Thr324Lys	p.T324K	ENST00000346208		324	aCa/aAa																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518540	69518540	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	143	539	0	ENST00000294312.3:c.105C>A	p.His35Gln	p.H35Q	ENST00000294312	NM_005117.2	35	caC/caA																																																																															
INHA	3623	MSKCC	GRCh37	2	220437302	220437302	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	189	685	0	ENST00000243786.2:c.206A>T	p.His69Leu	p.H69L	ENST00000243786	NM_002191.3	69	cAc/cTc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55136799	55136799	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0065191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	123	320	0	ENST00000257290.5:c.1122-1G>T		p.X374_splice	ENST00000257290	NM_006206.4	374																																																																																
AR	367	MSKCC	GRCh37	X	66766463	66766463	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	28	372	0	ENST00000374690.3:c.1475G>T	p.Gly492Val	p.G492V	ENST00000374690	NM_000044.3	492	gGc/gTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0065195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	289	197	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	125	183	0	ENST00000269305.4:c.772G>C	p.Glu258Gln	p.E258Q	ENST00000269305	NM_001126112.2	258	Gaa/Caa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577331	64577331	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	94	257	0	ENST00000337652.1:c.251C>A	p.Ser84Tyr	p.S84Y	ENST00000337652	NM_130803.2	84	tCt/tAt																																																																															
YAP1	10413	MSKCC	GRCh37	11	102100460	102100461	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0065195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	67	227	0	ENST00000282441.5:c.1304_1305delinsTT	p.Pro435Leu	p.P435L	ENST00000282441	NM_001130145.2	435	cCC/cTT																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233252	69233273	+	frameshift_variant	Frame_Shift_Del	DEL	GTGAATGATTCCAGAGAGTCAT	GTGAATGATTCCAGAGAGTCAT	-			P-0065195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	203	248	0	ENST00000462284.1:c.1120_1141del	p.Asn374LeufsTer37	p.N374Lfs*37	ENST00000462284	NM_002392.5	373	GTGAATGATTCCAGAGAGTCATgt/gt																																																																															
KLF5	688	MSKCC	GRCh37	13	73649905	73649905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	62	242	0	ENST00000377687.4:c.1255G>A	p.Glu419Lys	p.E419K	ENST00000377687	NM_001730.3	419	Gag/Aag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30133065	30133065	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0065195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	52	195	0	ENST00000331968.5:c.536G>T	p.Gly179Val	p.G179V	ENST00000331968	NM_002742.2	179	gGg/gTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31016003	31016003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	135	249	0	ENST00000375687.4:c.325G>A	p.Glu109Lys	p.E109K	ENST00000375687	NM_015338.5	109	Gag/Aag																																																																															
TOP1	7150	MSKCC	GRCh37	20	39750350	39750350	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	50	196	0	ENST00000361337.2:c.1965G>T	p.Lys655Asn	p.K655N	ENST00000361337	NM_003286.2	655	aaG/aaT																																																																															
E2F3	1871	MSKCC	GRCh37	6	20490617	20490617	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1330116976		P-0065195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	73	219	0	ENST00000346618.3:c.1354G>A	p.Asp452Asn	p.D452N	ENST00000346618	NM_001949.4	452	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0065201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	175	615	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467123	99467123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	98	551	0	ENST00000268035.6:c.2504C>A	p.Pro835His	p.P835H	ENST00000268035	NM_000875.3	835	cCt/cAt																																																																															
BARD1	580	MSKCC	GRCh37	2	215632322	215632323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0065201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	219	474	0	ENST00000260947.4:c.1451dup	p.Ala485GlyfsTer11	p.A485Gfs*11	ENST00000260947	NM_000465.2	484	aag/aaAg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138376612	138376612	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	79	425	0	ENST00000289153.2:c.2862G>C	p.Glu954Asp	p.E954D	ENST00000289153	NM_006219.2	954	gaG/gaC																																																																															
ATRX	546	MSKCC	GRCh37	X	76944418	76944418	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0065201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	26	401	0	ENST00000373344.5:c.487G>T	p.Asp163Tyr	p.D163Y	ENST00000373344	NM_000489.3	163	Gat/Tat																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0065207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	119	442	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576110	88576110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	75	512	0	ENST00000360948.2:c.1563C>A	p.His521Gln	p.H521Q	ENST00000360948	NM_001012338.2	521	caC/caA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0065207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	73	331	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346340	73346340	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	101	434	0	ENST00000377767.4:c.1460A>T	p.Asp487Val	p.D487V	ENST00000377767	NM_014953.3	487	gAc/gTc																																																																															
GAB1	2549	MSKCC	GRCh37	4	144361484	144361484	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	114	561	0	ENST00000262994.4:c.1534G>T	p.Ala512Ser	p.A512S	ENST00000262994	NM_002039.3	512	Gca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0065210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	141	537	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	118	463	0	ENST00000263967.3:c.3129G>C	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atC																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805601	46805601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	165	568	0	ENST00000290295.7:c.355G>A	p.Glu119Lys	p.E119K	ENST00000290295	NM_006361.5	119	Gag/Aag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098559	47098559	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0065210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	147	647	0	ENST00000409792.3:c.6715del	p.Gln2239SerfsTer9	p.Q2239Sfs*9	ENST00000409792	NM_014159.6	2239	Cag/ag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502213	157502213	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	100	569	0	ENST00000346085.5:c.3246G>C	p.Glu1082Asp	p.E1082D	ENST00000346085	NM_020732.3	1082	gaG/gaC																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271246	38271246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	123	660	0	ENST00000425967.3:c.2462C>T	p.Ser821Leu	p.S821L	ENST00000425967	NM_001174067.1	821	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934874		P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			754	252	711	0	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																															
TP63	8626	MSKCC	GRCh37	3	189612028	189612028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	40	577	0	ENST00000264731.3:c.1780C>T	p.Arg594Ter	p.R594*	ENST00000264731	NM_003722.4	594	Cga/Tga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602583	10602583	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			771	129	794	0	ENST00000171111.5:c.995del	p.Gly332AlafsTer68	p.G332Afs*68	ENST00000171111	NM_203500.1	332	gGc/gc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959247	2959247	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	146	605	0	ENST00000396946.4:c.2270-1G>T		p.X757_splice	ENST00000396946	NM_032415.4	757																																																																																
TGFBR1	7046	MSKCC	GRCh37	9	101904847	101904847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	66	403	0	ENST00000374994.4:c.835G>A	p.Val279Met	p.V279M	ENST00000374994	NM_004612.2	279	Gtg/Atg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120271	70120271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			758	117	746	0	ENST00000245479.2:c.1273C>A	p.Leu425Ile	p.L425I	ENST00000245479	NM_000346.3	425	Ctc/Atc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137850	64137850	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			809	70	764	0	ENST00000334205.4:c.1951G>T	p.Val651Phe	p.V651F	ENST00000334205	NM_003942.2	651	Gtc/Ttc																																																																															
TEK	7010	MSKCC	GRCh37	9	27228220	27228220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	58	407	0	ENST00000380036.4:c.3217C>A	p.Gln1073Lys	p.Q1073K	ENST00000380036	NM_000459.3	1073	Caa/Aaa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291778	15291778	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	90	666	0	ENST00000263388.2:c.2988G>T	p.Gln996His	p.Q996H	ENST00000263388	NM_000435.2	996	caG/caT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099387	27099399	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTGGGTATCAG	CCCTGGGTATCAG	-			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	44	539	0	ENST00000324856.7:c.3627_3639del	p.Gly1210ValfsTer2	p.G1210Vfs*2	ENST00000324856	NM_006015.4	1208	aaCCCTGGGTATCAG/aa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175956147	175956147	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	25	305	0	ENST00000367669.3:c.2065A>G	p.Lys689Glu	p.K689E	ENST00000367669	NM_022457.5	689	Aaa/Gaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100793	8100793	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	49	695	0	ENST00000346208.3:c.767G>T	p.Arg256Leu	p.R256L	ENST00000346208		256	cGg/cTg																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813319	102813319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			760	44	631	0	ENST00000307046.8:c.370C>A	p.Gln124Lys	p.Q124K	ENST00000307046	NM_001111285.1	124	Cag/Aag																																																																															
DIS3	22894	MSKCC	GRCh37	13	73335500	73335500	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	53	305	0	ENST00000377767.4:c.2670+1G>T		p.X890_splice	ENST00000377767	NM_014953.3	890																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81819658	81819658	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			764	53	622	0	ENST00000359376.3:c.64C>G	p.Leu22Val	p.L22V	ENST00000359376	NM_002661.3	22	Ctg/Gtg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351349	89351349	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			805	115	686	0	ENST00000301030.4:c.1601A>T	p.Gln534Leu	p.Q534L	ENST00000301030	NM_001256183.1	534	cAg/cTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	42	597	0	ENST00000245479.2:c.783G>T	p.Glu261Asp	p.E261D	ENST00000245479	NM_000346.3	261	gaG/gaT																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78727903	78727903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			702	47	567	0	ENST00000306801.3:c.748G>A	p.Glu250Lys	p.E250K	ENST00000306801	NM_020761.2	250	Gag/Aag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2220143	2220143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	94	651	0	ENST00000398665.3:c.2728C>T	p.Pro910Ser	p.P910S	ENST00000398665	NM_032482.2	910	Ccc/Tcc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4094473	4094473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	104	506	0	ENST00000262948.5:c.1070G>T	p.Arg357Leu	p.R357L	ENST00000262948	NM_030662.3	357	cGg/cTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982491	25982491	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	54	422	0	ENST00000435504.4:c.799G>C	p.Ala267Pro	p.A267P	ENST00000435504		267	Gct/Cct																																																																															
CUL3	8452	MSKCC	GRCh37	2	225367752	225367752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	33	296	0	ENST00000264414.4:c.1415G>T	p.Gly472Val	p.G472V	ENST00000264414	NM_003590.4	472	gGa/gTa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546898	9546898	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	91	657	0	ENST00000353224.5:c.1124C>G	p.Ser375Cys	p.S375C	ENST00000353224	NM_177990.2	375	tCt/tGt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40709550	40709550	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	76	433	0	ENST00000373198.4:c.4352A>G	p.Glu1451Gly	p.E1451G	ENST00000373198	NM_133170.3	1451	gAg/gGg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430717	181430717	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			962	122	880	0	ENST00000325404.1:c.569G>T	p.Gly190Val	p.G190V	ENST00000325404	NM_003106.3	190	gGc/gTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557911	187557911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	54	606	0	ENST00000441802.2:c.3800G>T	p.Arg1267Ile	p.R1267I	ENST00000441802	NM_005245.3	1267	aGa/aTa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79961025	79961025	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	69	419	0	ENST00000265081.6:c.422G>C	p.Cys141Ser	p.C141S	ENST00000265081	NM_002439.4	141	tGc/tCc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79961156	79961156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	35	320	0	ENST00000265081.6:c.553G>T	p.Asp185Tyr	p.D185Y	ENST00000265081	NM_002439.4	185	Gat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112173650	112173650	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	41	426	0	ENST00000257430.4:c.2359A>T	p.Ser787Cys	p.S787C	ENST00000257430	NM_000038.5	787	Agt/Tgt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149514459	149514459	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			755	54	663	0	ENST00000261799.4:c.485A>T	p.Glu162Val	p.E162V	ENST00000261799	NM_002609.3	162	gAg/gTg																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250490	26250490	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			811	274	870	0	ENST00000446824.2:c.344C>G	p.Ala115Gly	p.A115G	ENST00000446824	NM_021018.2	115	gCc/gGc																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519380	137519380	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	63	408	0	ENST00000367739.4:c.1258G>T	p.Glu420Ter	p.E420*	ENST00000367739	NM_000416.2	420	Gaa/Taa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265514	152265514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	36	559	0	ENST00000206249.3:c.967G>A	p.Glu323Lys	p.E323K	ENST00000206249	NM_000125.3	323	Gag/Aag																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969951	161969952	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	66	510	0	ENST00000366898.1:c.1017_1018delinsTT	p.Gly340Trp	p.G340W	ENST00000366898	NM_004562.2	339	gcGGgg/gcTTgg																																																																															
SMO	6608	MSKCC	GRCh37	7	128851991	128851991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	194	723	0	ENST00000249373.3:c.2063C>A	p.Pro688His	p.P688H	ENST00000249373	NM_005631.4	688	cCc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974648	21974803	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGCTCCCGCTGCAGACCCTCTACCCACCTGGATCGGCCTCCGACCGTAACTATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATG	CCTGCTCCCGCTGCAGACCCTCTACCCACCTGGATCGGCCTCCGACCGTAACTATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATG	-			P-0065212-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	108	723	0	ENST00000304494.5:c.24_150+29del		p.X8_splice	ENST00000304494	NM_000077.4	8																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0065217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	95	371	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527870	103527870	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	53	556	0	ENST00000355739.4:c.3178A>G	p.Ile1060Val	p.I1060V	ENST00000355739	NM_000123.3	1060	Ata/Gta																																																																															
DICER1	23405	MSKCC	GRCh37	14	95595947	95595947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	47	372	0	ENST00000343455.3:c.596G>A	p.Cys199Tyr	p.C199Y	ENST00000343455	NM_177438.2	199	tGt/tAt																																																																															
EZH1	2145	MSKCC	GRCh37	17	40864402	40864402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	143	513	0	ENST00000428826.2:c.1306G>A	p.Gly436Arg	p.G436R	ENST00000428826		436	Ggg/Agg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220505	1220505	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0065217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	177	691	0	ENST00000326873.7:c.597+1G>A		p.X199_splice	ENST00000326873	NM_000455.4	199																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602872	10602872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	225	628	0	ENST00000171111.5:c.706G>A	p.Asp236Asn	p.D236N	ENST00000171111	NM_203500.1	236	Gac/Aac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134297	11134297	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0065217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	162	486	0	ENST00000344626.4:c.2963T>G	p.Leu988Trp	p.L988W	ENST00000344626	NM_003072.3	988	tTg/tGg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368208	45368208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	26	479	0	ENST00000262160.6:c.1394G>A	p.Ser465Asn	p.S465N	ENST00000262160	NM_005901.5	465	aGc/aAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	40	583	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0065234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	18	336	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435000	110435000	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	108	775	0	ENST00000375856.3:c.3401A>G	p.Lys1134Arg	p.K1134R	ENST00000375856	NM_003749.2	1134	aAg/aGg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732964	30733022	+	frameshift_variant	Frame_Shift_Del	DEL	AGGCCCGTCTCACAGCCCAGTGTGTGGCAGAACGCTTCAGTGAGCTGGAGCATCTGGAC	AGGCCCGTCTCACAGCCCAGTGTGTGGCAGAACGCTTCAGTGAGCTGGAGCATCTGGAC	-			P-0065234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	75	570	0	ENST00000359013.4:c.1656_1714del	p.Arg553LeufsTer12	p.R553Lfs*12	ENST00000359013	NM_001024847.2	551	gAGGCCCGTCTCACAGCCCAGTGTGTGGCAGAACGCTTCAGTGAGCTGGAGCATCTGGAC/g																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099980	27099980	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	CAT			P-0065234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	79	728	0	ENST00000324856.7:c.3859delinsCAT	p.Arg1287HisfsTer3	p.R1287Hfs*3	ENST00000324856	NM_006015.4	1287	Aga/CATga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0065235-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	652	332	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562958	95562958	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065235-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	409	524	0	ENST00000343455.3:c.4299G>T	p.Lys1433Asn	p.K1433N	ENST00000343455	NM_177438.2	1433	aaG/aaT																																																																															
MGA	23269	MSKCC	GRCh37	15	41999993	41999993	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065235-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	233	447	0	ENST00000219905.7:c.2256A>T	p.Leu752Phe	p.L752F	ENST00000219905	NM_001164273.1	752	ttA/ttT																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58725306	58725306	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065235-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	143	503	0	ENST00000305921.3:c.880C>G	p.Pro294Ala	p.P294A	ENST00000305921	NM_003620.3	294	Cca/Gca																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602488	10602488	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1397945617		P-0065235-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	536	788	0	ENST00000171111.5:c.1090G>T	p.Gly364Cys	p.G364C	ENST00000171111	NM_203500.1	364	Ggc/Tgc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027718	48027718	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0065235-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	240	478	0	ENST00000234420.5:c.2596A>T	p.Lys866Ter	p.K866*	ENST00000234420	NM_000179.2	866	Aaa/Taa																																																																															
CUL3	8452	MSKCC	GRCh37	2	225378265	225378266	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0065235-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	71	353	0	ENST00000264414.4:c.629dup	p.Leu210PhefsTer20	p.L210Ffs*20	ENST00000264414	NM_003590.4	210	ttg/ttTg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279824	29279824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065235-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			36	88	76	0	ENST00000544604.2:c.70C>T	p.Arg24Cys	p.R24C	ENST00000544604	NM_001206998.1	24	Cgc/Tgc																																																																															
NF2	4771	MSKCC	GRCh37	22	30064391	30064391	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065235-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	269	498	0	ENST00000338641.4:c.955C>T	p.Gln319Ter	p.Q319*	ENST00000338641	NM_000268.3	319	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629415	187629415	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065235-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	353	628	0	ENST00000441802.2:c.1567G>T	p.Glu523Ter	p.E523*	ENST00000441802	NM_005245.3	523	Gaa/Taa																																																																															
SDHA	6389	MSKCC	GRCh37	5	231091	231091	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065235-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	100	287	0	ENST00000264932.6:c.871G>T	p.Glu291Ter	p.E291*	ENST00000264932	NM_004168.2	291	Gag/Tag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117687261	117687261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065235-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	140	439	0	ENST00000368508.3:c.2790G>T	p.Gln930His	p.Q930H	ENST00000368508	NM_002944.2	930	caG/caT																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981798	70981798	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065235-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	562	649	1	ENST00000276594.2:c.298C>G	p.Pro100Ala	p.P100A	ENST00000276594	NM_024504.3	100	Ccg/Gcg																																																																															
NF1	4763	MSKCC	GRCh37	17	29508804	29508804	+	splice_donor_variant	Splice_Site	SNP	G	G	C	rs1060500274		P-0065258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	79	306	0	ENST00000358273.4:c.730+1G>C		p.X244_splice	ENST00000358273	NM_001042492.2	244																																																																																
ROS1	6098	MSKCC	GRCh37	6	117639417	117639417	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0065258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			33	104	360	0	ENST00000368508.3:c.5941-2A>G		p.X1981_splice	ENST00000368508	NM_002944.2	1981																																																																																
KMT2C	58508	MSKCC	GRCh37	7	152008941	152008973	+	protein_altering_variant	In_Frame_Del	DEL	TTCATCCCACAGTTTACCAGCTTGATCATCTGA	TTCATCCCACAGTTTACCAGCTTGATCATCTGA	CCC			P-0065258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	57	389	1	ENST00000262189.6:c.649_681delinsGGG	p.Ser217_Glu227delinsGly	p.S217_E227delinsG	ENST00000262189	NM_170606.2	217	TCAGATGATCAAGCTGGTAAACTGTGGGATGAA/GGG																																																																															
NADK	65220	MSKCC	GRCh37	1	1688018	1688027	+	missense_variant	Missense_Mutation	ONP	TTTCTTTTCC	TTTCTTTTCC	ATGATCGTCT			P-0065258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	79	521	0	ENST00000341426.5:c.414_423delinsAGACGATCAT	p.Glu139_Lys141delinsAspAspHis	p.E139_K141delinsDDH	ENST00000341426	NM_023018.4	138	gtGGAAAAGAAA/gtAGACGATCAT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0065259-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	68	245	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129418	64129418	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0065259-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	23	529	1	ENST00000334205.4:c.850C>T	p.Arg284Ter	p.R284*	ENST00000334205	NM_003942.2	284	Cga/Tga																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873585	35873585	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065259-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	45	401	0	ENST00000303115.3:c.541G>T	p.Val181Leu	p.V181L	ENST00000303115	NM_002185.3	181	Gtg/Ttg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115698	8115834	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTAGATTAACAGACCCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGG	TTAGATTAACAGACCCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGG	-			P-0065259-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	166	356	0	ENST00000346208.3:c.1048-4_1180del		p.X350_splice	ENST00000346208		350																																																																																
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0065262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	93	473	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711927	89711928	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0065262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	218	286	0	ENST00000371953.3:c.548dup	p.Asn184GlufsTer6	p.N184Efs*6	ENST00000371953	NM_000314.4	182	tta/ttAa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948187	71948187	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0065262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	210	490	0	ENST00000298229.2:c.2900del	p.Pro967LeufsTer164	p.P967Lfs*164	ENST00000298229	NM_001567.3	967	Cct/ct																																																																															
CDH1	999	MSKCC	GRCh37	16	68772298	68772299	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0065262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	116	453	0	ENST00000261769.5:c.150_151dup	p.Val51AlafsTer6	p.V51Afs*6	ENST00000261769	NM_004360.3	49	-/CG																																																																															
JAK3	3718	MSKCC	GRCh37	19	17954215	17954215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0065262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	57	516	0	ENST00000458235.1:c.394C>T	p.Pro132Ser	p.P132S	ENST00000458235	NM_000215.3	132	Cca/Tca																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266837	+	protein_altering_variant	In_Frame_Del	DEL	TCTG	TCTG	C			P-0065262-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	113	335	0	ENST00000335508.6:c.2095_2098delinsG	p.Gln699_Lys700delinsGlu	p.Q699_K700delinsE	ENST00000335508	NM_012433.2	699	CAGAaa/Gaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254826	16254826	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0064874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	43	456	0	ENST00000375759.3:c.2091C>G	p.Tyr697Ter	p.Y697*	ENST00000375759	NM_015001.2	697	taC/taG																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099956	27099957	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0064874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	168	541	0	ENST00000324856.7:c.3836_3837del	p.Tyr1279SerfsTer7	p.Y1279Sfs*7	ENST00000324856	NM_006015.4	1279	TAt/t																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0064874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	14	390	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024684	31024684	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			750	40	559	0	ENST00000375687.4:c.4169A>G	p.His1390Arg	p.H1390R	ENST00000375687	NM_015338.5	1390	cAt/cGt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47059132	47059132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	171	379	0	ENST00000409792.3:c.7529G>A	p.Arg2510His	p.R2510H	ENST00000409792	NM_014159.6	2510	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0064874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	14	204	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0064874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	36	379	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																															
KIT	3815	MSKCC	GRCh37	4	55599234	55599234	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0064874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	25	302	0	ENST00000288135.5:c.2362-2A>G		p.X788_splice	ENST00000288135	NM_000222.2	788																																																																																
APC	324	MSKCC	GRCh37	5	112154997	112154997	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	41	357	0	ENST00000257430.4:c.1268G>A	p.Trp423Ter	p.W423*	ENST00000257430	NM_000038.5	423	tGg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112174842	112174842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0064874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	24	382	0	ENST00000257430.4:c.3552del	p.Thr1185GlnfsTer80	p.T1185Qfs*80	ENST00000257430	NM_000038.5	1184	gCc/gc																																																																															
APC	324	MSKCC	GRCh37	5	112174975	112174975	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0064874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	82	400	0	ENST00000257430.4:c.3684del	p.Asn1229IlefsTer36	p.N1229Ifs*36	ENST00000257430	NM_000038.5	1228	caG/ca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242470	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC	rs397517096		P-0064874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	196	335	0	ENST00000275493.2:c.2239_2240delinsCC	p.Leu747Pro	p.L747P	ENST00000275493	NM_005228.3	747	TTa/CCa																																																																															
EP300	2033	MSKCC	GRCh37	22	41572510	41572510	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748485911		P-0064877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	192	626	0	ENST00000263253.7:c.5039G>A	p.Arg1680His	p.R1680H	ENST00000263253	NM_001429.3	1680	cGc/cAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960039	134960039	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs533462328		P-0064877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	158	586	0	ENST00000398015.3:c.2396G>A	p.Arg799His	p.R799H	ENST00000398015	NM_004441.4	799	cGc/cAc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61717812	61717812	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064877-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	131	474	0	ENST00000401558.2:c.1987C>G	p.Gln663Glu	p.Q663E	ENST00000401558	NM_003400.3	663	Caa/Gaa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231551	5231551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	61	480	0	ENST00000357368.4:c.1925C>T	p.Pro642Leu	p.P642L	ENST00000357368	NM_002850.3	642	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0064899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	370	468	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647133	23647133	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs571063157		P-0064899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	60	455	0	ENST00000261584.4:c.734C>T	p.Ala245Val	p.A245V	ENST00000261584	NM_024675.3	245	gCg/gTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593533	48593533	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	156	293	0	ENST00000342988.3:c.1284G>T	p.Lys428Asn	p.K428N	ENST00000342988	NM_005359.5	428	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577520	7577520	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	184	422	0	ENST00000269305.4:c.761T>C	p.Ile254Thr	p.I254T	ENST00000269305	NM_001126112.2	254	aTc/aCc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900640	32900640	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80358747		P-0064899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	101	288	0	ENST00000380152.3:c.521G>A	p.Arg174His	p.R174H	ENST00000380152		174	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	95	287	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1280398	1280398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	158	548	0	ENST00000310581.5:c.1825C>A	p.His609Asn	p.H609N	ENST00000310581	NM_198253.2	609	Cat/Aat																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98215848	98215848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	177	357	0	ENST00000331920.6:c.3361C>T	p.His1121Tyr	p.H1121Y	ENST00000331920	NM_000264.3	1121	Cac/Tac																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0065060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	63	684	0				ENST00000310581	NM_198253.2																																																																																	
RRAS2	22800	MSKCC	GRCh37	11	14380347	14380347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	229	789	0	ENST00000256196.4:c.70G>T	p.Gly24Cys	p.G24C	ENST00000256196		24	Ggc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434181	49434181	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0065060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			806	133	959	0	ENST00000301067.7:c.7372C>T	p.Gln2458Ter	p.Q2458*	ENST00000301067	NM_003482.3	2458	Cag/Tag																																																																															
NF2	4771	MSKCC	GRCh37	22	30035145	30035145	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	166	652	0	ENST00000338641.4:c.307G>T	p.Glu103Ter	p.E103*	ENST00000338641	NM_000268.3	103	Gag/Tag																																																																															
EED	8726	MSKCC	GRCh37	11	85989516	85989517	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0065060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	62	518	0	ENST00000263360.6:c.1276dup	p.Ile426AsnfsTer5	p.I426Nfs*5	ENST00000263360	NM_003797.3	425	-/A																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244230	46244230	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0065060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			768	87	729	0	ENST00000334344.6:c.2324T>G	p.Leu775Ter	p.L775*	ENST00000334344	NM_152641.2	775	tTa/tGa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434954	49434954	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			765	106	844	0	ENST00000301067.7:c.6599C>G	p.Pro2200Arg	p.P2200R	ENST00000301067	NM_003482.3	2200	cCt/cGt																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7984488	7984488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	97	645	0	ENST00000319144.4:c.370G>A	p.Asp124Asn	p.D124N	ENST00000319144	NM_001139.2	124	Gac/Aac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983957	15983957	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	101	713	0	ENST00000268712.3:c.3262C>G	p.Leu1088Val	p.L1088V	ENST00000268712	NM_006311.3	1088	Ctt/Gtt																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690708	33690709	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs746280504		P-0065060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			753	90	663	0	ENST00000308377.4:c.118_119del	p.Asp40ProfsTer28	p.D40Pfs*28	ENST00000308377	NM_152270.3	40	GAc/c																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298703	15298703	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	95	658	1	ENST00000263388.2:c.1595G>T	p.Arg532Leu	p.R532L	ENST00000263388	NM_000435.2	532	cGc/cTc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57470707	57470707	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	92	543	0	ENST00000371085.3:c.180G>C	p.Met60Ile	p.M60I	ENST00000371085	NM_000516.4	60	atG/atC																																																																															
EP300	2033	MSKCC	GRCh37	22	41572418	41572441	+	inframe_deletion	In_Frame_Del	DEL	GTCCACCATGTGCATGCTGGTGGA	GTCCACCATGTGCATGCTGGTGGA	-			P-0065060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	281	955	0	ENST00000263253.7:c.4948_4971del	p.Ser1650_Glu1657del	p.S1650_E1657del	ENST00000263253	NM_001429.3	1649	tgGTCCACCATGTGCATGCTGGTGGAg/tgg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626634	12626634	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs775817988		P-0065060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			873	53	820	0	ENST00000251849.4:c.1655A>G	p.Asn552Ser	p.N552S	ENST00000251849	NM_002880.3	552	aAc/aGc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131951817	131951818	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0065060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	34	349	0	ENST00000265335.6:c.3163dup	p.Ser1055LysfsTer2	p.S1055Kfs*2	ENST00000265335		1053	-/A																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371668	55371668	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0065060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			711	109	843	0	ENST00000297316.4:c.358G>C	p.Glu120Gln	p.E120Q	ENST00000297316	NM_022454.3	120	Gag/Cag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347057	347057	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0065062-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	75	408	0	ENST00000262320.3:c.1954G>A	p.Gly652Arg	p.G652R	ENST00000262320	NM_003502.3	652	Ggg/Agg																																																																															
STK11	6794	MSKCC	GRCh37	19	1218404	1218424	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTCTGTCCCAGGGAAATTCA	TCTCTGTCCCAGGGAAATTCA	-			P-0065062-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	157	452	0	ENST00000326873.7:c.291-12_299del		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151845415	151845415	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0065149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	41	642	0	ENST00000262189.6:c.13597C>T	p.Arg4533Ter	p.R4533*	ENST00000262189	NM_170606.2	4533	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0065150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	16	271	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432166	121432166	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	29	520	0	ENST00000257555.6:c.913C>G	p.Pro305Ala	p.P305A	ENST00000257555		305	Cct/Gct																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627451	37627454	+	frameshift_variant	Frame_Shift_Del	DEL	TCTG	TCTG	CC			P-0065151-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	78	559	0	ENST00000447079.4:c.1366_1369delinsCC	p.Ser456ProfsTer5	p.S456Pfs*5	ENST00000447079	NM_015083.1	456	TCTGcc/CCcc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0065151-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	92	584	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0065151-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	80	545	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25978930	25978930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	135	406	0	ENST00000435504.4:c.993C>A	p.Phe331Leu	p.F331L	ENST00000435504		331	ttC/ttA																																																																															
APC	324	MSKCC	GRCh37	5	112170648	112170648	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0065152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			8	53	416	0	ENST00000257430.4:c.1744G>T	p.Glu582Ter	p.E582*	ENST00000257430	NM_000038.5	582	Gaa/Taa																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61322907	61322907	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			28	12	321	0	ENST00000283752.5:c.1157G>C	p.Arg386Thr	p.R386T	ENST00000283752	NM_006919.2	386	aGa/aCa																																																																															
CIC	23152	MSKCC	GRCh37	19	42798860	42798860	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0065152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	133	681	0	ENST00000575354.2:c.4434del	p.Gln1479ArgfsTer31	p.Q1479Rfs*31	ENST00000575354	NM_015125.3	1478	Ttt/tt																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383804	84383805	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0065152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	57	500	0	ENST00000321945.7:c.1046_1047dup	p.Asp350Ter	p.D350*	ENST00000321945	NM_139076.2	349	-/TA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0007181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	99	360	1	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0007181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	114	408	2	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	55	249	0	ENST00000257430.4:c.4473dup	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259335	89259335	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750779844		P-0007181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	64	470	1	ENST00000336596.2:c.479G>A	p.Arg160His	p.R160H	ENST00000336596	NM_005233.5	160	cGt/cAt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843614	156843614	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs797045060		P-0007181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	173	504	1	ENST00000524377.1:c.1040G>A	p.Arg347His	p.R347H	ENST00000524377	NM_002529.3	347	cGc/cAc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94068102	94068102	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	260	706	0	ENST00000369303.4:c.860C>G	p.Ser287Cys	p.S287C	ENST00000369303	NM_004440.3	287	tCc/tGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0007779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	118	488	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753975	57753975	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	112	502	0	ENST00000274289.3:c.649A>T	p.Met217Leu	p.M217L	ENST00000274289	NM_006622.3	217	Atg/Ttg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528852	157528852	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	52	378	0	ENST00000346085.5:c.6577G>T	p.Asp2193Tyr	p.D2193Y	ENST00000346085	NM_020732.3	2193	Gac/Tac																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683782	162683782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	44	361	0	ENST00000366898.1:c.187C>A	p.Gln63Lys	p.Q63K	ENST00000366898	NM_004562.2	63	Cag/Aag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460527	8460527	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1489849541		P-0007779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	76	481	0	ENST00000356435.5:c.3759G>A	p.Met1253Ile	p.M1253I	ENST00000356435		1253	atG/atA																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570329	95570329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	53	388	0	ENST00000343455.3:c.3404A>G	p.Gln1135Arg	p.Q1135R	ENST00000343455	NM_177438.2	1135	cAa/cGa																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110129	8110129	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	96	347	0	ENST00000585124.1:c.476G>T	p.Arg159Leu	p.R159L	ENST00000585124	NM_004217.3	159	cGc/cTc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243620	41243620	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1333	111	559	0	ENST00000357654.3:c.3928A>T	p.Thr1310Ser	p.T1310S	ENST00000357654	NM_007294.3	1310	Aca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577412	7577543	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCGGTAAGAGGTGGGCCCAGGGGTCAGAGGCAAGCAGAGGCTGGGGCACAGCAGGCCAGTGTGCAGGGTGGCAAGTGGCTCCTGACCTGGAGTCTTCCAGTGTGATGATGGTGAGGATGGGCCTCCGGTTC	ATCGGTAAGAGGTGGGCCCAGGGGTCAGAGGCAAGCAGAGGCTGGGGCACAGCAGGCCAGTGTGCAGGGTGGCAAGTGGCTCCTGACCTGGAGTCTTCCAGTGTGATGATGGTGAGGATGGGCCTCCGGTTC	-			P-0007779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	73	150	0	ENST00000269305.4:c.738_782+87del		p.X246_splice	ENST00000269305	NM_001126112.2	246																																																																																
TP53	7157	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs876660821		P-0008019-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	314	156	0	ENST00000269305.4:c.537T>G	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caG																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0008019-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	163	128	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859016	57859016	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765428970		P-0008019-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	82	453	0	ENST00000228682.2:c.512G>A	p.Arg171Gln	p.R171Q	ENST00000228682	NM_005269.2	171	cGg/cAg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528589	89528589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008019-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	58	209	0	ENST00000336596.2:c.2889G>T	p.Lys963Asn	p.K963N	ENST00000336596	NM_005233.5	963	aaG/aaT																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245506	153245506	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008019-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	82	246	0	ENST00000281708.4:c.1685C>A	p.Ser562Ter	p.S562*	ENST00000281708	NM_033632.3	562	tCa/tAa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520761	176520761	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141530067		P-0008019-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	129	155	0	ENST00000292408.4:c.1504G>A	p.Val502Ile	p.V502I	ENST00000292408	NM_213647.1	502	Gtc/Atc																																																																															
BLM	641	MSKCC	GRCh37	15	91337522	91337522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008019-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	59	302	0	ENST00000355112.3:c.3145G>A	p.Gly1049Arg	p.G1049R	ENST00000355112	NM_000057.2	1049	Gga/Aga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	82	333	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0009446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	91	328	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	167	626	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0015535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	205	782	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
BRAF	673	MSKCC	GRCh37	7	140534539	140534539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	120	475	1	ENST00000288602.6:c.374C>T	p.Ser125Phe	p.S125F	ENST00000288602	NM_004333.4	125	tCt/tTt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206722	36206722	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	162	629	0	ENST00000300305.3:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000300305		264	Cag/Tag																																																																															
CDH1	999	MSKCC	GRCh37	16	68845618	68845618	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	210	590	0	ENST00000261769.5:c.864del	p.Asp288GlufsTer6	p.D288Efs*6	ENST00000261769	NM_004360.3	288	gaC/ga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15995270	15995270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	155	443	0	ENST00000268712.3:c.2923G>A	p.Glu975Lys	p.E975K	ENST00000268712	NM_006311.3	975	Gag/Aag																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14629147	14629147	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0015535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	70	343	0	ENST00000254322.2:c.15C>G	p.Tyr5Ter	p.Y5*	ENST00000254322	NM_006145.1	5	taC/taG																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99149949	99149949	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	106	417	0	ENST00000074304.5:c.261G>C	p.Glu87Asp	p.E87D	ENST00000074304	NM_001134224.1	87	gaG/gaC																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	61	941	0	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	58	555	2	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	96	458	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
CIC	23152	MSKCC	GRCh37	19	42791719	42791719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	66	640	0	ENST00000575354.2:c.605G>A	p.Arg202Gln	p.R202Q	ENST00000575354	NM_015125.3	202	cGg/cAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118918	70118918	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	118	908	2	ENST00000245479.2:c.490C>T	p.Gln164Ter	p.Q164*	ENST00000245479	NM_000346.3	164	Cag/Tag																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882050	36882050	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	95	881	9	ENST00000358127.4:c.963del	p.Ala322LeufsTer11	p.A322Lfs*11	ENST00000358127	NM_001280556.1	321	ccC/cc																																																																															
BLM	641	MSKCC	GRCh37	15	91310208	91310208	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs747341586		P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	53	550	3	ENST00000355112.3:c.2268del	p.Asp757ThrfsTer4	p.D757Tfs*4	ENST00000355112	NM_000057.2	754	tcA/tc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52724244	52724244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	49	532	0	ENST00000322088.6:c.1376G>A	p.Arg459His	p.R459H	ENST00000322088	NM_014225.5	459	cGc/cAc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	65	743	1	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	47	547	2	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	85	721	0	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	55	923	5	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2958127	2958127	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs769192567		P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	88	866	0	ENST00000396946.4:c.2605C>T	p.Arg869Trp	p.R869W	ENST00000396946	NM_032415.4	869	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445041	49445041	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	72	759	0	ENST00000301067.7:c.2425del	p.Gln809ArgfsTer121	p.Q809Rfs*121	ENST00000301067	NM_003482.3	809	Cag/ag																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	110	978	6	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243809211	243809211	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	50	690	0	ENST00000263826.5:c.413C>G	p.Thr138Ser	p.T138S	ENST00000263826	NM_005465.4	138	aCc/aGc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998724	100998725	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	47	936	0	ENST00000325455.5:c.1077dup	p.Asp360ArgfsTer19	p.D360Rfs*19	ENST00000325455	NM_001202474.3	359	-/C																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778282	3778282	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	46	758	0	ENST00000262367.5:c.6766del	p.Leu2256SerfsTer46	p.L2256Sfs*46	ENST00000262367	NM_004380.2	2256	Ctc/tc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56862947	56862947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	62	622	0	ENST00000308159.5:c.853G>A	p.Gly285Arg	p.G285R	ENST00000308159	NM_014669.4	285	Ggg/Agg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2220106	2220106	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	81	709	0	ENST00000398665.3:c.2692-1G>T		p.X898_splice	ENST00000398665	NM_032482.2	898																																																																																
DOT1L	84444	MSKCC	GRCh37	19	2225404	2225404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	67	694	4	ENST00000398665.3:c.3614C>T	p.Ala1205Val	p.A1205V	ENST00000398665	NM_032482.2	1205	gCa/gTa																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965749	18965749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	130	1067	0	ENST00000262803.5:c.1327C>A	p.His443Asn	p.H443N	ENST00000262803	NM_002911.3	443	Cac/Aac																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918147	50918147	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778972543		P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	74	884	2	ENST00000440232.2:c.2464G>A	p.Asp822Asn	p.D822N	ENST00000440232	NM_002691.3	822	Gac/Aac																																																																															
ROS1	6098	MSKCC	GRCh37	6	117686887	117686887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	23	429	0	ENST00000368508.3:c.2830C>A	p.Pro944Thr	p.P944T	ENST00000368508	NM_002944.2	944	Cct/Act																																																																															
EGFR	1956	MSKCC	GRCh37	7	55214367	55214367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778252		P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	74	865	0	ENST00000275493.2:c.493C>T	p.Arg165Trp	p.R165W	ENST00000275493	NM_005228.3	165	Cgg/Tgg																																																																															
HGF	3082	MSKCC	GRCh37	7	81340797	81340797	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs761396857		P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	40	442	0	ENST00000222390.5:c.1444C>T	p.His482Tyr	p.H482Y	ENST00000222390	NM_000601.4	482	Cat/Tat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860464	151860464	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147350420		P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	86	726	1	ENST00000262189.6:c.10198C>T	p.Arg3400Cys	p.R3400C	ENST00000262189	NM_170606.2	3400	Cgt/Tgt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275776	38275776	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	43	720	0	ENST00000425967.3:c.1493A>G	p.Glu498Gly	p.E498G	ENST00000425967	NM_001174067.1	498	gAa/gGa																																																																															
LYN	4067	MSKCC	GRCh37	8	56863053	56863054	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	42	734	2	ENST00000519728.1:c.327dup	p.Glu110ArgfsTer40	p.E110Rfs*40	ENST00000519728	NM_002350.3	107	aca/acAa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98215857	98215858	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	205	818	0	ENST00000331920.6:c.3351dup	p.Ala1118CysfsTer27	p.A1118Cfs*27	ENST00000331920	NM_000264.3	1117	-/T																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0027419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	293	527	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
SDHA	6389	MSKCC	GRCh37	5	223682	223682	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs369321221		P-0027419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	157	407	0	ENST00000264932.6:c.149C>T	p.Ser50Phe	p.S50F	ENST00000264932	NM_004168.2	50	tCc/tTc																																																																															
MED12	9968	MSKCC	GRCh37	X	70357045	70357045	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747305574		P-0027419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	69	350	1	ENST00000374080.3:c.5560C>T	p.Arg1854Cys	p.R1854C	ENST00000374080		1854	Cgt/Tgt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068998	30068998	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	91	587	0	ENST00000331968.5:c.1931A>T	p.Asn644Ile	p.N644I	ENST00000331968	NM_002742.2	644	aAt/aTt																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799700	72799700	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	76	524	0	ENST00000325599.8:c.1469C>G	p.Ser490Cys	p.S490C	ENST00000325599	NM_018130.2	490	tCt/tGt																																																																															
SDHA	6389	MSKCC	GRCh37	5	223664	223664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1265	217	510	0	ENST00000264932.6:c.131C>T	p.Ser44Phe	p.S44F	ENST00000264932	NM_004168.2	44	tCt/tTt																																																																															
SDHA	6389	MSKCC	GRCh37	5	224491	224491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	55	111	0	ENST00000264932.6:c.167C>T	p.Pro56Leu	p.P56L	ENST00000264932	NM_004168.2	56	cCa/cTa																																																																															
SDHA	6389	MSKCC	GRCh37	5	224617	224617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	127	279	0	ENST00000264932.6:c.293C>T	p.Ser98Leu	p.S98L	ENST00000264932	NM_004168.2	98	tCa/tTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0028857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	37	367	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0028857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	8	279	0	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	338	481	0	ENST00000263967.3:c.278G>T	p.Arg93Leu	p.R93L	ENST00000263967	NM_006218.2	93	cGg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112173669	112173670	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0028857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	26	261	0	ENST00000257430.4:c.2379_2380del	p.Tyr796TrpfsTer2	p.Y796Wfs*2	ENST00000257430	NM_000038.5	793	cAA/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	73	604	0	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976706	2976706	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1044557293		P-0028857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	31	430	4	ENST00000396946.4:c.1306C>T	p.Arg436Trp	p.R436W	ENST00000396946	NM_032415.4	436	Cgg/Tgg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243776973	243776973	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0028857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	45	444	0	ENST00000263826.5:c.696G>T	p.Glu232Asp	p.E232D	ENST00000263826	NM_005465.4	232	gaG/gaT																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31390227	31390227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	42	465	0	ENST00000328111.2:c.2182G>A	p.Ala728Thr	p.A728T	ENST00000328111	NM_006892.3	728	Gct/Act																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526730	106526730	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	23	252	0	ENST00000359195.3:c.3023A>G	p.Lys1008Arg	p.K1008R	ENST00000359195	NM_002649.2	1008	aAa/aGa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781554	9781554	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	244	631	3	ENST00000377346.4:c.1864G>T	p.Glu622Ter	p.E622*	ENST00000377346	NM_005026.3	622	Gag/Tag																																																																															
PARP1	142	MSKCC	GRCh37	1	226573318	226573318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	206	527	0	ENST00000366794.5:c.898G>T	p.Gly300Cys	p.G300C	ENST00000366794	NM_001618.3	300	Ggt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	216	518	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NUP93	9688	MSKCC	GRCh37	16	56867207	56867208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	250	604	0	ENST00000308159.5:c.1428dup	p.Ala477CysfsTer22	p.A477Cfs*22	ENST00000308159	NM_014669.4	476	gtt/gTtt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953188	17953188	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1370621788		P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	263	550	0	ENST00000458235.1:c.798C>A	p.Asp266Glu	p.D266E	ENST00000458235	NM_000215.3	266	gaC/gaA																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913500		P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	154	343	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42848529	42848529	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	171	417	0	ENST00000398585.3:c.813del	p.Ala272GlnfsTer8	p.A272Qfs*8	ENST00000398585	NM_001135099.1	271	aaA/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	225	563	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112179371	112179371	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	213	446	0	ENST00000257430.4:c.8080A>C	p.Ile2694Leu	p.I2694L	ENST00000257430	NM_000038.5	2694	Att/Ctt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38282200	38282200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	216	616	2	ENST00000425967.3:c.856C>T	p.Pro286Ser	p.P286S	ENST00000425967	NM_001174067.1	286	Ccc/Tcc																																																																															
SYK	6850	MSKCC	GRCh37	9	93650795	93650795	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	144	324	0	ENST00000375746.1:c.1723-2A>G		p.X575_splice	ENST00000375746	NM_001174167.1	575																																																																																
MAPKAP1	79109	MSKCC	GRCh37	9	128434668	128434668	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	334	752	2	ENST00000265960.3:c.186G>T	p.Gln62His	p.Q62H	ENST00000265960	NM_001006617.1	62	caG/caT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038723	47038723	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	248	664	0	ENST00000329236.7:c.499G>T	p.Glu167Ter	p.E167*	ENST00000329236	NM_001204466.1	167	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0042652-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			386	192	640	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0042652-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			471	132	465	0	ENST00000257430.4:c.4192_4193del	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436952	49436952	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748653082		P-0042652-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	176	480	0	ENST00000301067.7:c.5551G>A	p.Val1851Met	p.V1851M	ENST00000301067	NM_003482.3	1851	Gtg/Atg																																																																															
BARD1	580	MSKCC	GRCh37	2	215610562	215610562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146946984		P-0042652-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	81	374	0	ENST00000260947.4:c.1694G>A	p.Arg565His	p.R565H	ENST00000260947	NM_000465.2	565	cGt/cAt																																																																															
ERG	2078	MSKCC	GRCh37	21	39775497	39775497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042652-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			601	188	542	1	ENST00000288319.7:c.523G>A	p.Asp175Asn	p.D175N	ENST00000288319	NM_182918.3	175	Gac/Aac																																																																															
APC	324	MSKCC	GRCh37	5	112164576	112164576	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042652-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	77	329	0	ENST00000257430.4:c.1652del	p.Leu551CysfsTer7	p.L551Cfs*7	ENST00000257430	NM_000038.5	550	aaT/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042652-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			172	88	270	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920435	114920435	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042652-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			422	163	385	0	ENST00000543371.1:c.1377del	p.Trp459CysfsTer32	p.W459Cfs*32	ENST00000543371	NM_001198531.1	459	tGg/tg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139732	55139732	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042652-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	79	337	0	ENST00000257290.5:c.1393T>G	p.Leu465Val	p.L465V	ENST00000257290	NM_006206.4	465	Ttg/Gtg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139748	55139748	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0042652-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			427	89	380	1	ENST00000257290.5:c.1409C>G	p.Ser470Ter	p.S470*	ENST00000257290	NM_006206.4	470	tCa/tGa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117715863	117715863	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042652-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			276	75	325	0	ENST00000368508.3:c.895del	p.Thr299LeufsTer3	p.T299Lfs*3	ENST00000368508	NM_002944.2	299	Act/ct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045302-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			523	15	362	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ALK	238	MSKCC	GRCh37	2	29606697	29606697	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs779282861		P-0045302-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			430	25	407	1	ENST00000389048.3:c.1183C>A	p.Arg395Ser	p.R395S	ENST00000389048	NM_004304.4	395	Cgt/Agt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	107	345	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	244	905	1	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29586109	29586109	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	90	379	0	ENST00000358273.4:c.4392C>G	p.Phe1464Leu	p.F1464L	ENST00000358273	NM_001042492.2	1464	ttC/ttG																																																																															
CIC	23152	MSKCC	GRCh37	19	42799063	42799065	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs751580245		P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	161	1423	0	ENST00000575354.2:c.4550_4552del	p.Lys1517del	p.K1517del	ENST00000575354	NM_015125.3	1516	cAGAag/cag																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873648	35873648	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	71	284	0	ENST00000303115.3:c.604G>C	p.Glu202Gln	p.E202Q	ENST00000303115	NM_002185.3	202	Gag/Cag																																																																															
EP300	2033	MSKCC	GRCh37	22	41551058	41551058	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	65	518	2	ENST00000263253.7:c.3202C>T	p.Gln1068Ter	p.Q1068*	ENST00000263253	NM_001429.3	1068	Cag/Tag																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30302655	30302655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	22	305	2	ENST00000322652.5:c.746C>T	p.Ser249Leu	p.S249L	ENST00000322652	NM_015355.2	249	tCg/tTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7117150	7117150	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146490822		P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	88	891	0	ENST00000302850.5:c.4066G>A	p.Glu1356Lys	p.E1356K	ENST00000302850	NM_000208.2	1356	Gag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141484	11141484	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	126	1041	0	ENST00000344626.4:c.3461T>G	p.Leu1154Arg	p.L1154R	ENST00000344626	NM_003072.3	1154	cTc/cGc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851498	63851498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	63	564	0	ENST00000279873.7:c.2276G>A	p.Arg759Lys	p.R759K	ENST00000279873	NM_032199.2	759	aGa/aAa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892212	9892212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	320	713	0	ENST00000330684.3:c.2278G>T	p.Gly760Cys	p.G760C	ENST00000330684	NM_001134407.1	760	Ggt/Tgt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141569579	141569582	+	frameshift_variant	Frame_Shift_Del	DEL	ACAA	ACAA	-			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	51	491	0	ENST00000220592.5:c.702_705del	p.Cys235LysfsTer15	p.C235Kfs*15	ENST00000220592	NM_012154.3	234	gtTTGT/gt																																																																															
ERF	2077	MSKCC	GRCh37	19	42753188	42753188	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780415692		P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	154	1233	0	ENST00000222329.4:c.1076C>T	p.Pro359Leu	p.P359L	ENST00000222329	NM_006494.2	359	cCg/cTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29552123	29552123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	29	170	0	ENST00000358273.4:c.1856G>A	p.Arg619Lys	p.R619K	ENST00000358273	NM_001042492.2	619	aGa/aAa																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246021843	246021843	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs1336136860		P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	101	743	0	ENST00000388985.4:c.1031T>A	p.Leu344Ter	p.L344*	ENST00000388985		344	tTg/tAg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77090400	77090400	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	140	477	0	ENST00000356341.3:c.325A>T	p.Thr109Ser	p.T109S	ENST00000356341	NM_002576.4	109	Aca/Tca																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022371	12022371	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	53	1051	0	ENST00000396373.4:c.477G>C	p.Gln159His	p.Q159H	ENST00000396373	NM_001987.4	159	caG/caC																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022825	12022825	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	54	742	0	ENST00000396373.4:c.931G>T	p.Asp311Tyr	p.D311Y	ENST00000396373	NM_001987.4	311	Gac/Tac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120722	115120722	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	173	1056	0	ENST00000257566.3:c.284C>A	p.Pro95His	p.P95H	ENST00000257566	NM_016569.3	95	cCc/cAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129359	2129359	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	475	1129	0	ENST00000219476.3:c.3214A>C	p.Ser1072Arg	p.S1072R	ENST00000219476	NM_000548.3	1072	Agc/Cgc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671675	67671675	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	158	565	0	ENST00000264010.4:c.2084A>C	p.Glu695Ala	p.E695A	ENST00000264010	NM_006565.3	695	gAg/gCg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117680	70117680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	162	1211	0	ENST00000245479.2:c.148G>A	p.Glu50Lys	p.E50K	ENST00000245479	NM_000346.3	50	Gag/Aag																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793308	33793308	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	24	361	0	ENST00000498907.2:c.13G>C	p.Asp5His	p.D5H	ENST00000498907	NM_004364.3	5	Gac/Cac																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96920629	96920629	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	93	536	0	ENST00000258439.3:c.351del	p.Pro118ArgfsTer6	p.P118Rfs*6	ENST00000258439	NM_001193304.2	117	ggG/gg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128018917	128018917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	55	437	0	ENST00000285398.2:c.1951G>A	p.Val651Ile	p.V651I	ENST00000285398	NM_000122.1	651	Gtt/Att																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198281574	198281574	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	66	549	1	ENST00000335508.6:c.557G>T	p.Gly186Val	p.G186V	ENST00000335508	NM_012433.2	186	gGa/gTa																																																																															
EP300	2033	MSKCC	GRCh37	22	41573970	41573970	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	100	774	0	ENST00000263253.7:c.6255C>G	p.Ile2085Met	p.I2085M	ENST00000263253	NM_001429.3	2085	atC/atG																																																																															
EP300	2033	MSKCC	GRCh37	22	41574076	41574076	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	91	700	1	ENST00000263253.7:c.6361C>T	p.Gln2121Ter	p.Q2121*	ENST00000263253	NM_001429.3	2121	Cag/Tag																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729930	41729930	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	87	893	1	ENST00000242208.4:c.599A>T	p.Glu200Val	p.E200V	ENST00000242208	NM_002192.2	200	gAg/gTg																																																																															
SMO	6608	MSKCC	GRCh37	7	128846104	128846104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	277	1067	0	ENST00000249373.3:c.1034C>A	p.Ala345Asp	p.A345D	ENST00000249373	NM_005631.4	345	gCc/gAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140534663	140534663	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	52	250	0	ENST00000288602.6:c.250G>C	p.Glu84Gln	p.E84Q	ENST00000288602	NM_004333.4	84	Gaa/Caa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740348	145740348	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs774637277		P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	140	1389	0	ENST00000428558.2:c.1592C>G	p.Ser531Cys	p.S531C	ENST00000428558	NM_004260.3	531	tCt/tGt																																																																															
ATRX	546	MSKCC	GRCh37	X	76909659	76909659	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	56	344	0	ENST00000373344.5:c.4246C>T	p.Gln1416Ter	p.Q1416*	ENST00000373344	NM_000489.3	1416	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048704-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			328	445	585	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575109	48575109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048704-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			244	130	474	0	ENST00000342988.3:c.303G>T	p.Trp101Cys	p.W101C	ENST00000342988	NM_005359.5	101	tgG/tgT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100949	27100949	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048704-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			490	427	501	0	ENST00000324856.7:c.4231C>T	p.Gln1411Ter	p.Q1411*	ENST00000324856	NM_006015.4	1411	Cag/Tag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376665	8376665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753080783		P-0048704-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			454	127	437	0	ENST00000356435.5:c.4448C>T	p.Thr1483Met	p.T1483M	ENST00000356435		1483	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0048704-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			377	304	348	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28895664	28895664	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048704-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			524	73	424	0	ENST00000282397.4:c.3110A>C	p.Lys1037Thr	p.K1037T	ENST00000282397	NM_002019.4	1037	aAg/aCg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355035	73355035	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048704-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			392	150	449	0	ENST00000377767.4:c.335T>C	p.Val112Ala	p.V112A	ENST00000377767	NM_014953.3	112	gTg/gCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0051742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	166	481	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0051742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	240	739	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	243	280	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913528		P-0051742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	180	537	0	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939207	36939207	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs760685785		P-0051742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	211	772	0	ENST00000361632.4:c.502C>T	p.Gln168Ter	p.Q168*	ENST00000361632		168	Cag/Tag																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121015	29121015	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121908701		P-0051742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	228	702	0	ENST00000328354.6:c.542G>A	p.Arg181His	p.R181H	ENST00000328354	NM_007194.3	181	cGt/cAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974813	21974813	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	24	203	0	ENST00000304494.5:c.14C>G	p.Ala5Gly	p.A5G	ENST00000304494	NM_000077.4	5	gCg/gGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	103	346	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100375	27100375	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	179	736	0	ENST00000324856.7:c.4087C>T	p.Gln1363Ter	p.Q1363*	ENST00000324856	NM_006015.4	1363	Caa/Taa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163720	32163720	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1253487294		P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	153	697	0	ENST00000375023.3:c.5506G>A	p.Glu1836Lys	p.E1836K	ENST00000375023	NM_004557.3	1836	Gag/Aag																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	125	519	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057961	27057961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	185	775	0	ENST00000324856.7:c.1669C>T	p.Gln557Ter	p.Q557*	ENST00000324856	NM_006015.4	557	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710987	114710987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	152	587	0	ENST00000543371.1:c.211C>T	p.Arg71Cys	p.R71C	ENST00000543371	NM_001198531.1	71	Cgc/Tgc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742145	145742145	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs571635676		P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	157	805	0	ENST00000428558.2:c.358G>A	p.Gly120Arg	p.G120R	ENST00000428558	NM_004260.3	120	Gga/Aga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86627238	86627238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	103	350	1	ENST00000274376.6:c.613C>T	p.Leu205Phe	p.L205F	ENST00000274376	NM_002890.2	205	Ctt/Ttt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289223	33289223	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	170	638	0	ENST00000374542.5:c.329C>G	p.Ser110Cys	p.S110C	ENST00000374542	NM_001141970.1	110	tCt/tGt																																																																															
SMO	6608	MSKCC	GRCh37	7	128850290	128850292	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs758836898		P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	135	795	0	ENST00000249373.3:c.1556_1558del	p.Lys519del	p.K519del	ENST00000249373	NM_005631.4	518	gAGAag/gag																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699388	117699388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	153	593	0	ENST00000369458.3:c.253G>A	p.Glu85Lys	p.E85K	ENST00000369458	NM_024626.3	85	Gaa/Aaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16237653	16237653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	115	473	0	ENST00000375759.3:c.1100C>T	p.Ser367Leu	p.S367L	ENST00000375759	NM_015001.2	367	tCa/tTa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114905817	114905817	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	166	618	0	ENST00000543371.1:c.836C>G	p.Pro279Arg	p.P279R	ENST00000543371	NM_001198531.1	279	cCc/cGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434689	49434689	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	199	1129	0	ENST00000301067.7:c.6864G>C	p.Lys2288Asn	p.K2288N	ENST00000301067	NM_003482.3	2288	aaG/aaC																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492557	56492557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	188	700	0	ENST00000267101.3:c.2707G>A	p.Glu903Lys	p.E903K	ENST00000267101	NM_001982.3	903	Gag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060765	38060765	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	238	1108	1	ENST00000250448.2:c.1224del	p.Ser409ArgfsTer31	p.S409Rfs*31	ENST00000250448	NM_004496.3	408	tcC/tc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748954	43748954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	196	855	0	ENST00000382044.4:c.1852G>A	p.Glu618Lys	p.E618K	ENST00000382044	NM_001141980.1	618	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68849553	68849553	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	183	753	0	ENST00000261769.5:c.1458del	p.Phe486LeufsTer36	p.F486Lfs*36	ENST00000261769	NM_004360.3	486	Ttt/tt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81954851	81954851	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368910187		P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	150	592	1	ENST00000359376.3:c.2284C>T	p.Pro762Ser	p.P762S	ENST00000359376	NM_002661.3	762	Ccc/Tcc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40865232	40865232	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	177	647	0	ENST00000428826.2:c.1199C>G	p.Ser400Cys	p.S400C	ENST00000428826		400	tCt/tGt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688788	47688788	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	119	416	0	ENST00000347630.2:c.512C>A	p.Ser171Tyr	p.S171Y	ENST00000347630	NM_001007230.1	171	tCt/tAt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52693375	52693375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	201	886	1	ENST00000322088.6:c.26C>T	p.Ser9Leu	p.S9L	ENST00000322088	NM_014225.5	9	tCg/tTg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010494	48010494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	104	539	0	ENST00000234420.5:c.122C>G	p.Ser41Cys	p.S41C	ENST00000234420	NM_000179.2	41	tCt/tGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161716	56161720	+	frameshift_variant	Frame_Shift_Del	DEL	CGTAA	CGTAA	-			P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	112	497	0	ENST00000399503.3:c.1214_1218del	p.Arg405HisfsTer19	p.R405Hfs*19	ENST00000399503	NM_005921.1	405	CGTAAc/c																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56167795	56167795	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	115	484	0	ENST00000399503.3:c.1360G>T	p.Glu454Ter	p.E454*	ENST00000399503	NM_005921.1	454	Gaa/Taa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38153399	38153399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2312	160	615	0	ENST00000317025.8:c.2830G>A	p.Glu944Lys	p.E944K	ENST00000317025	NM_023034.1	944	Gaa/Aaa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162194	38162194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1809	119	511	0	ENST00000317025.8:c.2522C>T	p.Ser841Phe	p.S841F	ENST00000317025	NM_023034.1	841	tCc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0060060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	133	351	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNB1	2782	MSKCC	GRCh37	1	1720604	1720605	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0060060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	222	675	0	ENST00000378609.4:c.803dup	p.Asn268LysfsTer45	p.N268Kfs*45	ENST00000378609	NM_002074.3	268	aac/aaAc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127719	64127719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	242	684	0	ENST00000334205.4:c.212C>T	p.Ala71Val	p.A71V	ENST00000334205	NM_003942.2	71	gCg/gTg																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981650	63981664	+	inframe_deletion	In_Frame_Del	DEL	TCCTCCTCCTCTTCC	TCCTCCTCCTCTTCC	-	rs764568639		P-0060060-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			848	146	855	0	ENST00000295900.6:c.2166_2180del	p.Ser724_Ser728del	p.S724_S728del	ENST00000295900	NM_000333.3	718	TCCTCCTCCTCTTCC/-																																																																															
NADK	65220	MSKCC	GRCh37	1	1688714	1688714	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	27	378	0	ENST00000341426.5:c.299G>T	p.Trp100Leu	p.W100L	ENST00000341426	NM_023018.4	100	tGg/tTg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798120	45798120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	36	447	0	ENST00000372115.3:c.689G>T	p.Cys230Phe	p.C230F	ENST00000372115	NM_001048171.1	230	tGc/tTc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193119470	193119470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	48	378	0	ENST00000367435.3:c.865G>T	p.Ala289Ser	p.A289S	ENST00000367435	NM_024529.4	289	Gcc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0061333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	24	264	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MSI1	4440	MSKCC	GRCh37	12	120806019	120806019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	84	441	0	ENST00000257552.2:c.158G>T	p.Arg53Leu	p.R53L	ENST00000257552	NM_002442.3	53	cGg/cTg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28588647	28588647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	33	353	0	ENST00000241453.7:c.2801C>T	p.Pro934Leu	p.P934L	ENST00000241453	NM_004119.2	934	cCa/cTa																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001456	29001456	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0061333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	35	348	0	ENST00000282397.4:c.1277-1G>C		p.X426_splice	ENST00000282397	NM_002019.4	426																																																																																
DIS3	22894	MSKCC	GRCh37	13	73349395	73349395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	26	383	0	ENST00000377767.4:c.941G>A	p.Gly314Asp	p.G314D	ENST00000377767	NM_014953.3	314	gGt/gAt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420329	88420329	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	40	426	0	ENST00000360948.2:c.2357del	p.Gly786ValfsTer30	p.G786Vfs*30	ENST00000360948	NM_001012338.2	786	gGt/gt																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805753	46805753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	40	480	0	ENST00000290295.7:c.203G>A	p.Gly68Glu	p.G68E	ENST00000290295	NM_006361.5	68	gGg/gAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440903	56440903	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs151209912		P-0061333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	49	454	0	ENST00000407977.2:c.434G>T	p.Arg145Leu	p.R145L	ENST00000407977		145	cGa/cTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207009	1207009	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	35	387	0	ENST00000326873.7:c.97G>T	p.Glu33Ter	p.E33*	ENST00000326873	NM_000455.4	33	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610431	10610432	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0061333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	49	473	0	ENST00000171111.5:c.278_279del	p.Phe93TyrfsTer33	p.F93Yfs*33	ENST00000171111	NM_203500.1	93	tTC/t																																																																															
ALK	238	MSKCC	GRCh37	2	29416388	29416388	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0061333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	28	437	0	ENST00000389048.3:c.4565T>G	p.Ile1522Arg	p.I1522R	ENST00000389048	NM_004304.4	1522	aTa/aGa																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67632049	67632049	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0061333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	28	368	0	ENST00000272342.5:c.2235T>G	p.Cys745Trp	p.C745W	ENST00000272342	NM_019002.3	745	tgT/tgG																																																																															
ATR	545	MSKCC	GRCh37	3	142222253	142222253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	17	258	0	ENST00000350721.4:c.5239G>T	p.Gly1747Cys	p.G1747C	ENST00000350721	NM_001184.3	1747	Ggt/Tgt																																																																															
SMO	6608	MSKCC	GRCh37	7	128851522	128851522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	26	395	0	ENST00000249373.3:c.1847C>T	p.Ser616Phe	p.S616F	ENST00000249373	NM_005631.4	616	tCt/tTt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066928	30066928	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061333-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	33	297	0	ENST00000331968.5:c.2203G>T	p.Gly735Ter	p.G735*	ENST00000331968	NM_002742.2	735	Gga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs942158624		P-0061834-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			840	29	616	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0062671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	53	476	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0062671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			826	27	562	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																															
MGA	23269	MSKCC	GRCh37	15	42041308	42041309	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0062671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			751	53	496	0	ENST00000219905.7:c.5504-1_5504delinsTT		p.X1835_splice	ENST00000219905	NM_001164273.1	1835																																																																																
LZTR1	8216	MSKCC	GRCh37	22	21345982	21345982	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	54	593	0	ENST00000215739.8:c.857G>T	p.Gly286Val	p.G286V	ENST00000215739	NM_006767.3	286	gGg/gTg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143352358	143352358	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	42	363	0	ENST00000262992.4:c.55G>T	p.Ala19Ser	p.A19S	ENST00000262992	NM_001101669.1	19	Gcc/Tcc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143352364	143352364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	37	352	0	ENST00000262992.4:c.49C>T	p.Pro17Ser	p.P17S	ENST00000262992	NM_001101669.1	17	Cct/Tct																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053239	180053239	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs934716331		P-0062671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	42	550	0	ENST00000261937.6:c.1130G>T	p.Gly377Val	p.G377V	ENST00000261937	NM_182925.4	377	gGg/gTg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001263	150001263	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	71	432	0	ENST00000253339.5:c.2341G>T	p.Val781Leu	p.V781L	ENST00000253339		781	Gta/Tta																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639639	3639650	+	inframe_deletion	In_Frame_Del	DEL	CAGAAGTTCCTG	CAGAAGTTCCTG	-			P-0062685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	565	626	0	ENST00000294008.3:c.3989_4000del	p.Pro1330_Asp1334delinsHis	p.P1330_D1334delinsH	ENST00000294008	NM_032444.2	1330	cCAGGAACTTCTGac/cac																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99162489	99162489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	544	447	0	ENST00000074304.5:c.1007C>T	p.Thr336Ile	p.T336I	ENST00000074304	NM_001134224.1	336	aCa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs483352695		P-0063239-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	62	518	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0063239-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			181	27	394	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
UPF1	5976	MSKCC	GRCh37	19	18960976	18960976	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1350475686		P-0063239-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			450	46	549	0	ENST00000262803.5:c.554A>G	p.Asn185Ser	p.N185S	ENST00000262803	NM_002911.3	185	aAc/aGc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391150	89391150	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0063676-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			337	150	373	0	ENST00000336596.2:c.1216A>T	p.Thr406Ser	p.T406S	ENST00000336596	NM_005233.5	406	Acc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0063676-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			124	388	223	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46254733	46254733	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0063676-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			145	370	216	0	ENST00000334344.6:c.4922+1G>C		p.X1641_splice	ENST00000334344	NM_152641.2	1641																																																																																
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520017		P-0063941-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			119	23	920	0	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220640	1220640	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131690940		P-0063941-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			115	28	902	0	ENST00000326873.7:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000326873	NM_000455.4	220	Cag/Tag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39930404	39930404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063941-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			225	48	828	0	ENST00000378444.4:c.3060G>A	p.Met1020Ile	p.M1020I	ENST00000378444	NM_001123385.1	1020	atG/atA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0063941-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			163	114	589	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953547	32953547	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063941-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			291	51	857	0	ENST00000380152.3:c.8848A>G	p.Lys2950Glu	p.K2950E	ENST00000380152		2950	Aag/Gag																																																																															
ATM	472	MSKCC	GRCh37	11	108123615	108123615	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs766757573		P-0063941-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			292	48	594	0	ENST00000278616.4:c.1874A>T	p.Asn625Ile	p.N625I	ENST00000278616	NM_000051.3	625	aAt/aTt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351704	89351704	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063941-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			248	22	985	0	ENST00000301030.4:c.1246G>T	p.Ala416Ser	p.A416S	ENST00000301030	NM_001256183.1	416	Gcg/Tcg																																																																															
YES1	7525	MSKCC	GRCh37	18	732851	732851	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063941-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			237	61	793	0	ENST00000314574.4:c.1406G>T	p.Gly469Val	p.G469V	ENST00000314574	NM_005433.3	469	gGc/gTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36215553	36215553	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0063941-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			148	34	740	0	ENST00000222270.7:c.3350A>T	p.Glu1117Val	p.E1117V	ENST00000222270	NM_014727.1	1117	gAa/gTa																																																																															
MED12	9968	MSKCC	GRCh37	X	70346876	70346877	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0063941-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			155	25	793	0	ENST00000374080.3:c.2744dup	p.Ser917GlnfsTer5	p.S917Qfs*5	ENST00000374080		915	gtg/gTtg																																																																															
ATRX	546	MSKCC	GRCh37	X	76889119	76889119	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063941-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			266	50	745	0	ENST00000373344.5:c.4891G>T	p.Ala1631Ser	p.A1631S	ENST00000373344	NM_000489.3	1631	Gct/Tct																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436865	52436866	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0064011-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	126	654	0	ENST00000460680.1:c.1912dup	p.Cys638LeufsTer5	p.C638Lfs*5	ENST00000460680	NM_004656.3	638	tgt/tTgt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0064250-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	25	468	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845850	151846872	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCCCAATTTCTTTAGAAATTCATCTATTTCATCCTCACAAGGTGGTTTAAATGTCCCCTTAGGGATTACAATATGAATGCTCCACTTCTTCCATTTCATTCCTCTCCATTTTTTATTGAGCGGCCTGCAATCTTCAAACCCACCATGGACAGCTCTTAGCCGAGGCTTCAGCTTGACTGTCACCTTCAGCTCATCTGGCTTGGCCTCGACTTGGGCTGCTTCAAAAGCAGGAGGGAAGGCGATGGGTGGTGAGGCAGGGGGAGAAGCTTTCTCTGGGAGCTGGGGGAGACAGTGCACATCCAAAGTGGAGATGTTGTTGCTGTACTGATGAAATGCTTTGGAAGGCGTTTCTCTCATAGGTGATTGTGGCAATGAAGGAATGGATTCCTGGGCAACATAAAGAAACCATGACAAAGAAAAATAATTCACAAGCCCGGAAAGCAATTCTTGTTAAGACAAGAAGCTGAGCAGTATGACTGAAGAGGATGGGTGACCTGAGGGGCAGAGGGAGAGTCAGCAGTAAGTGCTGGGGGCTCATGCACCGCAGAAGCTGACCATGCTCTAAGGTGCACAGGGATAGAGAGCGGGTGATGGCAGCTGTGCCGCGTCCTTTCGAGGCCTTTTCCACAAAGCCATAATTCTGGAGAATATTCTGCTCTTACACTTTCTGGGACAATCCCCTTTCTAACTATATTAAAACCAGAAAAAGAAAAAACACACACACACTCACAATGCTGTCAGAAGAGCTAATATAATTTGTACAATGGAACAGTGTTTTTTGTTTAACCAAATAAGAACGCTGCAGCATCGTTTCTTGAGAGCTTATCTCCACTCTAAAATTCACATCTGTTAATCTCAGCCTTAATCAATTGGTGTAAATGTTACAGAAAGGGAAGGAGCCCCTGTCAACAAATGAATCATACTAACTTTTCTCTGAGGCTTCTCAGCTCTGATCCGGCTGCTGAAACAGTTGAGCTGAGGGGAAATCTCCAATAGCTTATTTACTTTATGGTACAGAGTAT	TGCCCAATTTCTTTAGAAATTCATCTATTTCATCCTCACAAGGTGGTTTAAATGTCCCCTTAGGGATTACAATATGAATGCTCCACTTCTTCCATTTCATTCCTCTCCATTTTTTATTGAGCGGCCTGCAATCTTCAAACCCACCATGGACAGCTCTTAGCCGAGGCTTCAGCTTGACTGTCACCTTCAGCTCATCTGGCTTGGCCTCGACTTGGGCTGCTTCAAAAGCAGGAGGGAAGGCGATGGGTGGTGAGGCAGGGGGAGAAGCTTTCTCTGGGAGCTGGGGGAGACAGTGCACATCCAAAGTGGAGATGTTGTTGCTGTACTGATGAAATGCTTTGGAAGGCGTTTCTCTCATAGGTGATTGTGGCAATGAAGGAATGGATTCCTGGGCAACATAAAGAAACCATGACAAAGAAAAATAATTCACAAGCCCGGAAAGCAATTCTTGTTAAGACAAGAAGCTGAGCAGTATGACTGAAGAGGATGGGTGACCTGAGGGGCAGAGGGAGAGTCAGCAGTAAGTGCTGGGGGCTCATGCACCGCAGAAGCTGACCATGCTCTAAGGTGCACAGGGATAGAGAGCGGGTGATGGCAGCTGTGCCGCGTCCTTTCGAGGCCTTTTCCACAAAGCCATAATTCTGGAGAATATTCTGCTCTTACACTTTCTGGGACAATCCCCTTTCTAACTATATTAAAACCAGAAAAAGAAAAAACACACACACACTCACAATGCTGTCAGAAGAGCTAATATAATTTGTACAATGGAACAGTGTTTTTTGTTTAACCAAATAAGAACGCTGCAGCATCGTTTCTTGAGAGCTTATCTCCACTCTAAAATTCACATCTGTTAATCTCAGCCTTAATCAATTGGTGTAAATGTTACAGAAAGGGAAGGAGCCCCTGTCAACAAATGAATCATACTAACTTTTCTCTGAGGCTTCTCAGCTCTGATCCGGCTGCTGAAACAGTTGAGCTGAGGGGAAATCTCCAATAGCTTATTTACTTTATGGTACAGAGTAT	-			P-0064250-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			70	18	471	0	ENST00000262189.6:c.12775-635_13162del		p.X4259_splice	ENST00000262189	NM_170606.2	4259																																																																																
FGFR1	2260	MSKCC	GRCh37	8	38283681	38283681	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0064250-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	31	527	0	ENST00000425967.3:c.797A>C	p.Glu266Ala	p.E266A	ENST00000425967	NM_001174067.1	266	gAg/gCg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249013	55249014	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATGGCC			P-0064356-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			606	24	939	0	ENST00000275493.2:c.2312_2313insTGGCCA	p.Asn771_Pro772insGlyHis	p.N771_P772insGH	ENST00000275493	NM_005228.3	771	aac/aATGGCCac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0064404-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			629	29	555	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0064404-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			507	252	586	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064404-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			289	147	414	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064404-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			413	115	335	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0064602-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			334	216	255	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0064682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	17	457	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RB1	5925	MSKCC	GRCh37	13	48923138	48923138	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	13	191	0	ENST00000267163.4:c.586A>G	p.Ile196Val	p.I196V	ENST00000267163	NM_000321.2	196	Atc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0064683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	172	463	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
BTK	695	MSKCC	GRCh37	X	100617634	100617634	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0064683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			50	146	220	0	ENST00000308731.7:c.435C>A	p.Cys145Ter	p.C145*	ENST00000308731	NM_000061.2	145	tgC/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	262	286	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932195	36932205	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGCCCAGCA	GCTGCCCAGCA	-			P-0064683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	157	669	0	ENST00000361632.4:c.2264_2274del	p.Leu755ProfsTer13	p.L755Pfs*13	ENST00000361632		755	cTGCTGGGCAGC/c																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311647	15311872	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	CGGGTGGCGGTGGCGGTGGCGGCGACATCGGGCGACGGCGGCGGCGGCGGCCACGGGCCCCCGGCCCCATGGCGGCCGGCCGCGACCCTCCCCTCCTCCCTCCTTCCCTGGGCTCCGGGCGCGTCCCGGGCCAGCCTCCGCGCCGCCAACTTCGCCGAAGTGAGGCGGCCGGGCCGCCCCGCCCCCAGCCCTCGAAGGCTCGCCCCGCCCCGGGGCCGGCCCAGCG	CGGGTGGCGGTGGCGGTGGCGGCGACATCGGGCGACGGCGGCGGCGGCGGCCACGGGCCCCCGGCCCCATGGCGGCCGGCCGCGACCCTCCCCTCCTCCCTCCTTCCCTGGGCTCCGGGCGCGTCCCGGGCCAGCCTCCGCGCCGCCAACTTCGCCGAAGTGAGGCGGCCGGGCCGCCCCGCCCCCAGCCCTCGAAGGCTCGCCCCGCCCCGGGGCCGGCCCAGCG	-			P-0064683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	100	766	0				ENST00000263388	NM_000435.2			Jan-33																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31449478	31449523	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGATTCATTCCAAAATTTAAATGATGACTTGGATGAGTCATGGC	CAGGATTCATTCCAAAATTTAAATGATGACTTGGATGAGTCATGGC	-			P-0064683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	136	364	0	ENST00000344624.3:c.2686_2731del	p.Ala896IlefsTer35	p.A896Ifs*35	ENST00000344624		896	GCCATGACTCATCCAAGTCATCATTTAAATTTTGGAATGAATCCTGat/at																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742841	145742841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	404	533	0	ENST00000428558.2:c.170G>A	p.Gly57Asp	p.G57D	ENST00000428558	NM_004260.3	57	gGc/gAc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137293567	137293567	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	36	693	0	ENST00000481739.1:c.118G>C	p.Gly40Arg	p.G40R	ENST00000481739	NM_002957.4	40	Ggc/Cgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0064684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			47	20	207	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224384	36224384	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs868232650		P-0064684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	120	582	0	ENST00000222270.7:c.6934C>G	p.Gln2312Glu	p.Q2312E	ENST00000222270	NM_014727.1	2312	Cag/Gag																																																																															
ATM	472	MSKCC	GRCh37	11	108216566	108216566	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs876658958		P-0064684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	35	336	0	ENST00000278616.4:c.8515T>A	p.Phe2839Ile	p.F2839I	ENST00000278616	NM_000051.3	2839	Ttc/Atc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256583	16256583	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0064684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	85	493	0	ENST00000375759.3:c.3848C>G	p.Ser1283Ter	p.S1283*	ENST00000375759	NM_015001.2	1283	tCa/tGa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18658304	18658304	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	29	365	0	ENST00000266497.5:c.3109G>C	p.Asp1037His	p.D1037H	ENST00000266497		1037	Gat/Cat																																																																															
TSC2	7249	MSKCC	GRCh37	16	2131627	2131627	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	109	456	0	ENST00000219476.3:c.3642C>G	p.Asn1214Lys	p.N1214K	ENST00000219476	NM_000548.3	1214	aaC/aaG																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868120	56868120	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	117	456	0	ENST00000308159.5:c.1618G>C	p.Glu540Gln	p.E540Q	ENST00000308159	NM_014669.4	540	Gag/Cag																																																																															
ALK	238	MSKCC	GRCh37	2	29420447	29420447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	107	410	0	ENST00000389048.3:c.4034G>A	p.Gly1345Glu	p.G1345E	ENST00000389048	NM_004304.4	1345	gGa/gAa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022919	31022919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	92	497	0	ENST00000375687.4:c.2404G>A	p.Glu802Lys	p.E802K	ENST00000375687	NM_015338.5	802	Gag/Aag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023612	31023612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	114	467	0	ENST00000375687.4:c.3097G>A	p.Glu1033Lys	p.E1033K	ENST00000375687	NM_015338.5	1033	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175986	112175986	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	37	407	0	ENST00000257430.4:c.4695T>A	p.Asp1565Glu	p.D1565E	ENST00000257430	NM_000038.5	1565	gaT/gaA																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778071	27778071	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			874	154	646	0	ENST00000369163.2:c.220G>A	p.Glu74Lys	p.E74K	ENST00000369163	NM_003536.2	74	Gag/Aag																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231868	36231870	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0064684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	108	447	0	ENST00000300305.3:c.514_516del	p.Ser172del	p.S172del	ENST00000300305		172	AGC/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0064697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	25	692	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0064697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	16	350	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230472998	230472998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	21	683	0	ENST00000525115.1:c.724G>A	p.Gly242Ser	p.G242S	ENST00000525115		242	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	29	341	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911442	32911443	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0064701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	21	409	1	ENST00000380152.3:c.2957dup	p.Asn986LysfsTer2	p.N986Kfs*2	ENST00000380152		984	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578462	7578468	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGGTG	GCGGGTG	-			P-0064701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	78	891	0	ENST00000269305.4:c.462_468del	p.Thr155SerfsTer13	p.T155Sfs*13	ENST00000269305	NM_001126112.2	154	ggCACCCGC/gg																																																																															
EP300	2033	MSKCC	GRCh37	22	41542792	41542792	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	23	596	0	ENST00000263253.7:c.2103G>C	p.Gln701His	p.Q701H	ENST00000263253	NM_001429.3	701	caG/caC																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056054	26056054	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs762236209		P-0064701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	38	763	0	ENST00000343677.2:c.603G>C	p.Lys201Asn	p.K201N	ENST00000343677	NM_005319.3	201	aaG/aaC																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894922	101894935	+	frameshift_variant	Frame_Shift_Del	DEL	CCAAATGAAGAGGA	CCAAATGAAGAGGA	-			P-0064701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	23	571	0	ENST00000374994.4:c.477_490del	p.Asn160PhefsTer19	p.N160Ffs*19	ENST00000374994	NM_004612.2	159	CCAAATGAAGAGGAc/c																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624296	89624296	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs786201995		P-0064764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	20	375	0	ENST00000371953.3:c.70G>C	p.Asp24His	p.D24H	ENST00000371953	NM_000314.4	24	Gac/Cac																																																																															
ATM	472	MSKCC	GRCh37	11	108155200	108155200	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0064764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			45	67	377	0	ENST00000278616.4:c.3993G>C	p.Gln1331His	p.Q1331H	ENST00000278616	NM_000051.3	1331	caG/caC																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138054	2138054	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0064764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	44	641	0	ENST00000219476.3:c.5074G>T	p.Glu1692Ter	p.E1692*	ENST00000219476	NM_000548.3	1692	Gag/Tag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788575	3788576	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0064764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	22	361	0	ENST00000262367.5:c.4378dup	p.Tyr1460LeufsTer19	p.Y1460Lfs*19	ENST00000262367	NM_004380.2	1460	tat/tTat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs786203436		P-0064764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	10	615	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac																																																																															
RB1	5925	MSKCC	GRCh37	13	49039441	49039441	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0064764-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			66	121	423	0	ENST00000267163.4:c.2426del	p.Leu809ArgfsTer17	p.L809Rfs*17	ENST00000267163	NM_000321.2	809	cTg/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0064776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	247	561	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267371	198267371	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs778467242		P-0064776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	229	561	0	ENST00000335508.6:c.1986C>A	p.His662Gln	p.H662Q	ENST00000335508	NM_012433.2	662	caC/caA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0064776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	400	363	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922782	44922783	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0064776-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	238	285	0	ENST00000377967.4:c.1644_1645dup	p.Arg549ThrfsTer45	p.R549Tfs*45	ENST00000377967	NM_021140.2	548	acc/acCAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0064778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	134	268	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0064778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	427	536	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551682	150551682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	149	702	0	ENST00000369026.2:c.325G>A	p.Glu109Lys	p.E109K	ENST00000369026	NM_021960.4	109	Gag/Aag																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0064778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	122	539	3	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701248	43701248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773338141		P-0064778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			67	322	623	0	ENST00000382044.4:c.5447G>A	p.Arg1816Gln	p.R1816Q	ENST00000382044	NM_001141980.1	1816	cGa/cAa																																																																															
MSI2	124540	MSKCC	GRCh37	17	55334132	55334132	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	146	442	0	ENST00000284073.2:c.29C>A	p.Ser10Ter	p.S10*	ENST00000284073	NM_138962.2	10	tCg/tAg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162749914	162749914	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	285	715	0	ENST00000367921.3:c.2446C>T	p.Gln816Ter	p.Q816*	ENST00000367921	NM_006182.2	816	Caa/Taa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022263	31022263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs763361634		P-0064778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	118	651	0	ENST00000375687.4:c.1748G>A	p.Trp583Ter	p.W583*	ENST00000375687	NM_015338.5	583	tGg/tAg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864854	117864854	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			793	117	485	0	ENST00000297338.2:c.1255G>C	p.Glu419Gln	p.E419Q	ENST00000297338	NM_006265.2	419	Gaa/Caa																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599875	28599875	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	171	587	0	ENST00000253063.3:c.757G>C	p.Glu253Gln	p.E253Q	ENST00000253063	NM_031459.4	253	Gag/Cag																																																																															
MET	4233	MSKCC	GRCh37	7	116380975	116380975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064778-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	152	545	0	ENST00000397752.3:c.1597C>A	p.Pro533Thr	p.P533T	ENST00000397752	NM_000245.2	533	Cca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0064780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	136	431	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	91	326	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974760	21974762	+	frameshift_variant	Frame_Shift_Del	DEL	CCC	CCC	TA			P-0064780-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	125	597	0	ENST00000304494.5:c.65_67delinsTA	p.Arg22LeufsTer4	p.R22Lfs*4	ENST00000304494	NM_000077.4	22	cGGGgt/cTAgt																																																																															
APC	324	MSKCC	GRCh37	5	112175852	112175852	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0064786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	88	610	0	ENST00000257430.4:c.4561G>T	p.Glu1521Ter	p.E1521*	ENST00000257430	NM_000038.5	1521	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0064786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	119	549	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45860556	45860556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	110	690	1	ENST00000391945.4:c.1451C>T	p.Thr484Met	p.T484M	ENST00000391945	NM_000400.3	484	aCg/aTg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28595739	28595739	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1038449460		P-0064786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	105	592	0	ENST00000253063.3:c.136G>A	p.Ala46Thr	p.A46T	ENST00000253063	NM_031459.4	46	Gcc/Acc																																																																															
AXL	558	MSKCC	GRCh37	19	41748899	41748899	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750167315		P-0064786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	104	666	0	ENST00000301178.4:c.1424G>A	p.Arg475Gln	p.R475Q	ENST00000301178	NM_021913.4	475	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0064786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	60	462	0	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120497726	120497726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			740	128	715	0	ENST00000256646.2:c.2156C>T	p.Ser719Leu	p.S719L	ENST00000256646	NM_024408.3	719	tCa/tTa																																																																															
RET	5979	MSKCC	GRCh37	10	43622077	43622077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	103	595	2	ENST00000355710.3:c.3094G>A	p.Gly1032Ser	p.G1032S	ENST00000355710	NM_020975.4	1032	Ggc/Agc																																																																															
CIC	23152	MSKCC	GRCh37	19	42794595	42794595	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	50	658	0	ENST00000575354.2:c.1675G>C	p.Ala559Pro	p.A559P	ENST00000575354	NM_015125.3	559	Gcc/Ccc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732951	30732951	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223854		P-0064786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	102	609	0	ENST00000359013.4:c.1639G>A	p.Asp547Asn	p.D547N	ENST00000359013	NM_001024847.2	547	Gac/Aac																																																																															
FLT4	2324	MSKCC	GRCh37	5	180045872	180045872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	104	716	0	ENST00000261937.6:c.2899G>A	p.Ala967Thr	p.A967T	ENST00000261937	NM_182925.4	967	Gcc/Acc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372533	55372533	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	101	581	0	ENST00000297316.4:c.1223A>T	p.Tyr408Phe	p.Y408F	ENST00000297316	NM_022454.3	408	tAc/tTc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982331	201982332	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0064821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	166	643	0	ENST00000359651.3:c.715dup	p.Asp239GlyfsTer62	p.D239Gfs*62	ENST00000359651		237	aag/aaGg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243776975	243776975	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0064821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	55	400	0	ENST00000263826.5:c.694G>A	p.Glu232Lys	p.E232K	ENST00000263826	NM_005465.4	232	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs876660821		P-0064821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	281	651	0	ENST00000269305.4:c.537T>A	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caA																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2223419	2223419	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1271868009		P-0064821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	71	631	0	ENST00000398665.3:c.3530G>A	p.Gly1177Glu	p.G1177E	ENST00000398665	NM_032482.2	1177	gGg/gAg																																																																															
ALK	238	MSKCC	GRCh37	2	29754860	29754860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	130	582	0	ENST00000389048.3:c.1075G>A	p.Gly359Arg	p.G359R	ENST00000389048	NM_004304.4	359	Gga/Aga																																																																															
KDR	3791	MSKCC	GRCh37	4	55976857	55976857	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151317075		P-0064821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	142	467	0	ENST00000263923.4:c.1055C>T	p.Ala352Val	p.A352V	ENST00000263923	NM_002253.2	352	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175050	112175050	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0064821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	92	434	0	ENST00000257430.4:c.3759del	p.Ile1254LeufsTer11	p.I1254Lfs*11	ENST00000257430	NM_000038.5	1253	tcT/tc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371633	55371633	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs931390946		P-0064821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	91	494	0	ENST00000297316.4:c.323C>T	p.Ala108Val	p.A108V	ENST00000297316	NM_022454.3	108	gCg/gTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76763997	76763997	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	222	285	0	ENST00000373344.5:c.7311G>T	p.Met2437Ile	p.M2437I	ENST00000373344	NM_000489.3	2437	atG/atT																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440904	56440904	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1458799446		P-0064824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	13	662	0	ENST00000407977.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000407977		145	Cga/Tga																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981088	201981089	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0064824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	48	547	0	ENST00000359651.3:c.169dup	p.Ala57GlyfsTer35	p.A57Gfs*35	ENST00000359651		56	aag/aaGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	23	341	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591857	48591858	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTTA			P-0064824-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	12	584	0	ENST00000342988.3:c.1023_1024insAGTT	p.Pro342SerfsTer11	p.P342Sfs*11	ENST00000342988	NM_005359.5	340	-/GTTA																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0064825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	12	460	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604764	48604766	+	inframe_deletion	In_Frame_Del	DEL	TAC	TAC	-			P-0064825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	125	547	0	ENST00000342988.3:c.1586_1588del	p.Leu529_His530delinsTyr	p.L529_H530delinsY	ENST00000342988	NM_005359.5	529	tTACac/tac																																																																															
APC	324	MSKCC	GRCh37	5	112175039	112175040	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0064825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	108	438	0	ENST00000257430.4:c.3749_3750del	p.Lys1250SerfsTer5	p.K1250Sfs*5	ENST00000257430	NM_000038.5	1250	AAa/a																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21350094	21350094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064825-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	56	592	0	ENST00000215739.8:c.2002G>A	p.Asp668Asn	p.D668N	ENST00000215739	NM_006767.3	668	Gac/Aac																																																																															
STK11	6794	MSKCC	GRCh37	19	1220430	1220430	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0064848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	90	593	0	ENST00000326873.7:c.523A>T	p.Lys175Ter	p.K175*	ENST00000326873	NM_000455.4	175	Aag/Tag																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652501	48652501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	43	530	0	ENST00000376670.3:c.1172C>T	p.Thr391Met	p.T391M	ENST00000376670	NM_002049.3	391	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0064848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	35	321	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243809257	243809257	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	37	415	0	ENST00000263826.5:c.367T>A	p.Ser123Thr	p.S123T	ENST00000263826	NM_005465.4	123	Tca/Aca																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106524644	106524644	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	53	337	0	ENST00000359195.3:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000359195	NM_002649.2	935	taC/taA																																																																															
MET	4233	MSKCC	GRCh37	7	116412033	116412048	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTCCAGAAGGTATA	TTTTCCAGAAGGTATA	-			P-0064849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	204	502	0	ENST00000397752.3:c.3021_3028+8del		p.X1007_splice	ENST00000397752	NM_000245.2	1007																																																																																
BRCA2	675	MSKCC	GRCh37	13	32929014	32929014	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	34	399	0	ENST00000380152.3:c.7024C>G	p.Gln2342Glu	p.Q2342E	ENST00000380152		2342	Caa/Gaa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129425	152129425	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	44	523	0	ENST00000206249.3:c.378G>C	p.Gln126His	p.Q126H	ENST00000206249	NM_000125.3	126	caG/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0064853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	157	766	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372289	55372289	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs748072355		P-0064853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	132	1505	1	ENST00000297316.4:c.979C>A	p.Pro327Thr	p.P327T	ENST00000297316	NM_022454.3	327	Ccc/Acc																																																																															
AKT1	207	MSKCC	GRCh37	14	105239419	105239419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	18	1263	2	ENST00000349310.3:c.968A>G	p.Asp323Gly	p.D323G	ENST00000349310	NM_001014432.1	323	gAc/gGc																																																																															
STK19	8859	MSKCC	GRCh37	6	31947330	31947330	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1179338180		P-0064853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	72	676	2	ENST00000375331.2:c.803C>T	p.Thr268Met	p.T268M	ENST00000375331	NM_004197.1	268	aCg/aTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255347	16255347	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747275202		P-0064853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	151	795	0	ENST00000375759.3:c.2612G>A	p.Arg871His	p.R871H	ENST00000375759	NM_015001.2	871	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108168047	108168047	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	55	451	0	ENST00000278616.4:c.4943T>C	p.Val1648Ala	p.V1648A	ENST00000278616	NM_000051.3	1648	gTt/gCt																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29449565	29449565	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs776472367		P-0064853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	118	638	0	ENST00000544604.2:c.2768-2A>G		p.X923_splice	ENST00000544604	NM_001206998.1	923																																																																																
PHOX2B	8929	MSKCC	GRCh37	4	41748035	41748035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	89	952	2	ENST00000226382.2:c.734C>T	p.Ala245Val	p.A245V	ENST00000226382	NM_003924.3	245	gCg/gTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508431	106508431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	138	903	0	ENST00000359195.3:c.425C>T	p.Pro142Leu	p.P142L	ENST00000359195	NM_002649.2	142	cCg/cTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921481	39921481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064853-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	141	968	0	ENST00000378444.4:c.4339C>T	p.Arg1447Cys	p.R1447C	ENST00000378444	NM_001123385.1	1447	Cgc/Tgc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0064854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	12	271	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0064854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			661	60	554	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123181311	123181311	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs774761933		P-0064854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	39	152	0	ENST00000218089.9:c.775C>T	p.Arg259Ter	p.R259*	ENST00000218089	NM_001042749.1	259	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106178	27106178	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0064854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	59	665	0	ENST00000324856.7:c.5789C>G	p.Ser1930Ter	p.S1930*	ENST00000324856	NM_006015.4	1930	tCa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0064854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	51	347	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779657	3779657	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			765	81	758	0	ENST00000262367.5:c.5391G>C	p.Lys1797Asn	p.K1797N	ENST00000262367	NM_004380.2	1797	aaG/aaC																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544180	86544180	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			716	58	784	0	ENST00000262426.4:c.5C>G	p.Ser2Cys	p.S2C	ENST00000262426	NM_001451.2	2	tCt/tGt																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47601169	47601169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	54	491	0	ENST00000263735.4:c.407C>T	p.Ser136Phe	p.S136F	ENST00000263735	NM_002354.2	136	tCt/tTt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513316	106513316	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	45	504	0	ENST00000359195.3:c.2220G>C	p.Glu740Asp	p.E740D	ENST00000359195	NM_002649.2	740	gaG/gaC																																																																															
ATRX	546	MSKCC	GRCh37	X	76907793	76907797	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCT	CTCCT	-			P-0064854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	55	259	0	ENST00000373344.5:c.4364_4368del	p.Glu1455GlyfsTer10	p.E1455Gfs*10	ENST00000373344	NM_000489.3	1455	gAGGAG/g																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66522040	66522043	+	missense_variant	Missense_Mutation	ONP	GAAG	GAAG	AAAA			P-0064854-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	43	481	0	ENST00000358598.2:c.695_698delinsAAAA	p.Arg232_Arg233delinsLysLys	p.R232_R233delinsKK	ENST00000358598	NM_212471.2	232	aGAAGa/aAAAAa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93955064	93955064	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151105732		P-0064855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	134	335	0	ENST00000369303.4:c.2834C>T	p.Thr945Met	p.T945M	ENST00000369303	NM_004440.3	945	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574035	7574035	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs867389695		P-0064855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	156	363	0	ENST00000269305.4:c.994-2A>G		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
NKX2-1	7080	MSKCC	GRCh37	14	36986745	36986746	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0064855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	229	514	0	ENST00000354822.5:c.943dup	p.His315ProfsTer124	p.H315Pfs*124	ENST00000354822	NM_001079668.2	315	cac/cCac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211598	36211598	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	148	374	0	ENST00000222270.7:c.1349A>T	p.Gln450Leu	p.Q450L	ENST00000222270	NM_014727.1	450	cAa/cTa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920478	134920478	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	152	400	0	ENST00000398015.3:c.2293C>G	p.Leu765Val	p.L765V	ENST00000398015	NM_004441.4	765	Ctc/Gtc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970607	21971179	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCGCAGTCTAGGCCTTGAACTAGCAGAGGGTAGGTGTTTGGGTGGTGGTATGCTTTGGGAAGTATAATGTACAAAATGGGCTTTCACGTGCGCAAGTCCATTTCGGGATTATTTCCCATTTGCCGCCCTGGCGGGGCAGGGCGATAGGGAGACTCAGGCCGTCCCACCGATTGGCGCGTGAGCTGAGGCAAGACCGGAGACTGGTCTCCCGGGCTGAACTTTCTGTGCTGGAAAATGAATGCTCTGAGCTTTGGAAGCTCTCAGGGTACAAATTCTCAGATCATCAGTCCTCACCTGAGGGACCTTCCGCGGCATCTATGCGGGCATGGTTACTGCCTCTGGTGCCCCCCGCAGCCGCGCGCAGGTACCGTGCGACATCGCGATGGCCCAGCTCCTCAGCCAGGTCCACGGGCAGACGGCCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCG	CCGCAGTCTAGGCCTTGAACTAGCAGAGGGTAGGTGTTTGGGTGGTGGTATGCTTTGGGAAGTATAATGTACAAAATGGGCTTTCACGTGCGCAAGTCCATTTCGGGATTATTTCCCATTTGCCGCCCTGGCGGGGCAGGGCGATAGGGAGACTCAGGCCGTCCCACCGATTGGCGCGTGAGCTGAGGCAAGACCGGAGACTGGTCTCCCGGGCTGAACTTTCTGTGCTGGAAAATGAATGCTCTGAGCTTTGGAAGCTCTCAGGGTACAAATTCTCAGATCATCAGTCCTCACCTGAGGGACCTTCCGCGGCATCTATGCGGGCATGGTTACTGCCTCTGGTGCCCCCCGCAGCCGCGCGCAGGTACCGTGCGACATCGCGATGGCCCAGCTCCTCAGCCAGGTCCACGGGCAGACGGCCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCG	-			P-0064855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			18	71	35	0	ENST00000304494.5:c.179_457+294del		p.X60_splice	ENST00000304494	NM_000077.4	60																																																																																
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0064873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	322	607	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55152104	55152104	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121908588		P-0064873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	83	465	0	ENST00000257290.5:c.2536G>T	p.Asp846Tyr	p.D846Y	ENST00000257290	NM_006206.4	846	Gat/Tat																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321399	1321399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	50	482	0	ENST00000381566.1:c.356C>A	p.Pro119His	p.P119H	ENST00000381566		119	cCc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0064873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	42	320	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53231047	53231047	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0064873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	187	521	0	ENST00000375401.3:c.1855del	p.Thr619LeufsTer40	p.T619Lfs*40	ENST00000375401	NM_004187.3	619	Act/ct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624263	89624263	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0064875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	87	185	0	ENST00000371953.3:c.40del	p.Arg14GlyfsTer10	p.R14Gfs*10	ENST00000371953	NM_000314.4	13	Aaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0064875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	210	524	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242486	+	inframe_deletion	In_Frame_Del	DEL	TTAAGAGAAGCAACATCT	TTAAGAGAAGCAACATCT	-	rs121913440		P-0064875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	243	371	0	ENST00000275493.2:c.2239_2256del	p.Leu747_Ser752del	p.L747_S752del	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAACATCT/-																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166815	32166815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	72	483	1	ENST00000375023.3:c.4423C>T	p.Arg1475Cys	p.R1475C	ENST00000375023	NM_004557.3	1475	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	404	519	0	ENST00000269305.4:c.527G>C	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	tGc/tCc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120129	70120151	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGGCGCACACGCTGACCACGC	ACAGGCGCACACGCTGACCACGC	CGT			P-0064879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	171	484	1	ENST00000245479.2:c.1131_1153delinsCGT	p.Gln378ValfsTer193	p.Q378Vfs*193	ENST00000245479	NM_000346.3	377	ccACAGGCGCACACGCTGACCACGCtg/ccCGTtg																																																																															
APC	324	MSKCC	GRCh37	5	112175454	112175455	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTCTGTCAGTTCACTTGATAGT			P-0064879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	204	439	0	ENST00000257430.4:c.4166_4187dup	p.Glu1397CysfsTer5	p.E1397Cfs*5	ENST00000257430	NM_000038.5	1388	act/acTTCTGTCAGTTCACTTGATAGTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140507851	140507851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	74	288	0	ENST00000288602.6:c.620C>T	p.Pro207Leu	p.P207L	ENST00000288602	NM_004333.4	207	cCa/cTa																																																																															
ABL1	25	MSKCC	GRCh37	9	133755477	133755480	+	frameshift_variant	Frame_Shift_Del	DEL	CCGG	CCGG	-			P-0064879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	255	419	0	ENST00000318560.5:c.1448_1451del	p.Arg483ProfsTer36	p.R483Pfs*36	ENST00000318560	NM_005157.4	482	gaCCGG/ga																																																																															
BTK	695	MSKCC	GRCh37	X	100611835	100611836	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0064879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	137	160	0	ENST00000308731.7:c.1285_1286del	p.Ile429GlnfsTer10	p.I429Qfs*10	ENST00000308731	NM_000061.2	429	ATc/c																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0064882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	48	386	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578412	7578414	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0064882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	130	491	0	ENST00000269305.4:c.516_518del	p.Val173del	p.V173del	ENST00000269305	NM_001126112.2	172	gtTGTg/gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0064882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	22	289	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094396	27094396	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0064882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	47	422	0	ENST00000324856.7:c.3105del	p.Met1036TrpfsTer3	p.M1036Wfs*3	ENST00000324856	NM_006015.4	1035	gCc/gc																																																																															
APC	324	MSKCC	GRCh37	5	112175233	112175234	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0064882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	59	430	0	ENST00000257430.4:c.3942_3943del	p.Arg1314SerfsTer3	p.R1314Sfs*3	ENST00000257430	NM_000038.5	1314	agGTca/agca																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0064898-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	96	262	1	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0064898-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	127	497	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925316	114925317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769592153		P-0064898-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	193	367	13	ENST00000543371.1:c.1403dup	p.Cys469ValfsTer8	p.C469Vfs*8	ENST00000543371	NM_001198531.1	465	aga/agAa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225264		P-0064898-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	15	469	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604700	48604700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064898-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	162	451	1	ENST00000342988.3:c.1522G>A	p.Gly508Ser	p.G508S	ENST00000342988	NM_005359.5	508	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064898-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	101	281	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344852	118344852	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200209840		P-0064898-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	59	482	0	ENST00000534358.1:c.2978C>T	p.Thr993Ile	p.T993I	ENST00000534358	NM_005933.3	993	aCt/aTt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865720	57865720	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064898-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	186	608	0	ENST00000228682.2:c.3197A>G	p.Asp1066Gly	p.D1066G	ENST00000228682	NM_005269.2	1066	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112174356	112174357	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0064898-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	75	356	0	ENST00000257430.4:c.3066_3067del	p.Pro1024AsnfsTer4	p.P1024Nfs*4	ENST00000257430	NM_000038.5	1022	gAT/g																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151843701	151843701	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064898-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	150	395	0	ENST00000262189.6:c.14014G>C	p.Ala4672Pro	p.A4672P	ENST00000262189	NM_170606.2	4672	Gca/Cca																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737816	145737819	+	missense_variant	Missense_Mutation	ONP	CGCC	CGCC	TGCT			P-0064898-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	90	650	0	ENST00000428558.2:c.3011_3014delinsAGCA	p.Arg1004_Arg1005delinsGlnGln	p.R1004_R1005delinsQQ	ENST00000428558	NM_004260.3	1004	cGGCGg/cAGCAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			774	103	629	0	ENST00000269305.4:c.880del	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	294	Gag/ag																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885901	111885901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs79819500		P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			780	151	637	0	ENST00000341259.2:c.1523G>A	p.Arg508Gln	p.R508Q	ENST00000341259	NM_005475.2	508	cGg/cAg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209513	98209513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	43	629	0	ENST00000331920.6:c.4025G>T	p.Arg1342Leu	p.R1342L	ENST00000331920	NM_000264.3	1342	cGc/cTc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741542	145741542	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748212145		P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			853	97	698	0	ENST00000428558.2:c.961G>A	p.Gly321Arg	p.G321R	ENST00000428558	NM_004260.3	321	Gga/Aga																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469128	25469128	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1481248882		P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	90	559	0	ENST00000264709.3:c.1330G>T	p.Glu444Ter	p.E444*	ENST00000264709	NM_175629.2	444	Gag/Tag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3790470	3790470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	69	478	0	ENST00000262367.5:c.4063G>T	p.Gly1355Trp	p.G1355W	ENST00000262367	NM_004380.2	1355	Ggg/Tgg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176720871	176720871	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1260544167		P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	141	568	0	ENST00000439151.2:c.6502G>A	p.Gly2168Arg	p.G2168R	ENST00000439151	NM_022455.4	2168	Ggg/Agg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484327	8484327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	56	414	0	ENST00000356435.5:c.3205C>A	p.Gln1069Lys	p.Q1069K	ENST00000356435		1069	Cag/Aag																																																																															
MGA	23269	MSKCC	GRCh37	15	42042379	42042379	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	43	581	0	ENST00000219905.7:c.6574G>T	p.Glu2192Ter	p.E2192*	ENST00000219905	NM_001164273.1	2192	Gaa/Taa																																																																															
BARD1	580	MSKCC	GRCh37	2	215610538	215610538	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587780022		P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	74	379	0	ENST00000260947.4:c.1718T>C	p.Ile573Thr	p.I573T	ENST00000260947	NM_000465.2	573	aTa/aCa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729922	41729922	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			753	72	537	0	ENST00000242208.4:c.607G>T	p.Glu203Ter	p.E203*	ENST00000242208	NM_002192.2	203	Gaa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101399	27101399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	31	361	0	ENST00000324856.7:c.4681G>T	p.Val1561Leu	p.V1561L	ENST00000324856	NM_006015.4	1561	Gtg/Ttg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910856	114910856	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	43	484	0	ENST00000543371.1:c.975G>C	p.Gln325His	p.Q325H	ENST00000543371	NM_001198531.1	325	caG/caC																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945086	31945086	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			920	119	586	0	ENST00000340398.3:c.15G>T	p.Lys5Asn	p.K5N	ENST00000340398	NM_001013699.2	5	aaG/aaT																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123858	46123858	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			786	103	591	0	ENST00000334344.6:c.126del	p.Lys43ArgfsTer15	p.K43Rfs*15	ENST00000334344	NM_152641.2	42	Ggg/gg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858636	57858636	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			724	145	631	0	ENST00000228682.2:c.374C>G	p.Ser125Cys	p.S125C	ENST00000228682	NM_005269.2	125	tCc/tGc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061027	38061027	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1227249633		P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			850	60	709	0	ENST00000250448.2:c.962A>T	p.Glu321Val	p.E321V	ENST00000250448	NM_004496.3	321	gAg/gTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9984850	9984850	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	47	430	0	ENST00000330684.3:c.1115G>T	p.Trp372Leu	p.W372L	ENST00000330684	NM_001134407.1	372	tGg/tTg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657502	37657502	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	30	283	0	ENST00000447079.4:c.2420-1G>T		p.X807_splice	ENST00000447079	NM_015083.1	807																																																																																
BRCA1	672	MSKCC	GRCh37	17	41197793	41197793	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			741	75	602	0	ENST00000357654.3:c.5494G>C	p.Val1832Leu	p.V1832L	ENST00000357654	NM_007294.3	1832	Gtg/Ctg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59858358	59858358	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	22	268	0	ENST00000259008.2:c.1637A>C	p.Asp546Ala	p.D546A	ENST00000259008	NM_032043.2	546	gAt/gCt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610386	10610386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			831	91	645	0	ENST00000171111.5:c.324G>T	p.Lys108Asn	p.K108N	ENST00000171111	NM_203500.1	108	aaG/aaT																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272501	15272501	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			759	95	623	0	ENST00000263388.2:c.5938G>T	p.Ala1980Ser	p.A1980S	ENST00000263388	NM_000435.2	1980	Gcc/Tcc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046254	128046254	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			743	43	491	0	ENST00000285398.2:c.1009del	p.Val337SerfsTer15	p.V337Sfs*15	ENST00000285398	NM_000122.1	337	Gtc/tc																																																																															
CASP8	841	MSKCC	GRCh37	2	202149608	202149608	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	90	530	0	ENST00000358485.4:c.1049A>T	p.Gln350Leu	p.Q350L	ENST00000358485	NM_001080125.1	350	cAa/cTa																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21350154	21350154	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587777178		P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	93	700	0	ENST00000215739.8:c.2062C>T	p.Arg688Cys	p.R688C	ENST00000215739	NM_006767.3	688	Cgc/Tgc																																																																															
RAC2	5880	MSKCC	GRCh37	22	37628906	37628906	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	77	456	0	ENST00000249071.6:c.160G>T	p.Gly54Trp	p.G54W	ENST00000249071	NM_002872.4	54	Ggg/Tgg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185181416	185181416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	28	343	0	ENST00000265026.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000265026	NM_004721.4	453	Gaa/Aaa																																																																															
TP63	8626	MSKCC	GRCh37	3	189526183	189526183	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			926	57	716	0	ENST00000264731.3:c.447C>A	p.Tyr149Ter	p.Y149*	ENST00000264731	NM_003722.4	149	taC/taA																																																																															
REST	5978	MSKCC	GRCh37	4	57777127	57777127	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			706	163	502	0	ENST00000309042.7:c.323A>T	p.Asn108Ile	p.N108I	ENST00000309042	NM_005612.4	108	aAc/aTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180655	32180655	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs772156724		P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	54	449	0	ENST00000375023.3:c.2472C>A	p.Ser824Arg	p.S824R	ENST00000375023	NM_004557.3	824	agC/agA																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43748480	43748480	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1395807781		P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	71	488	0	ENST00000523873.1:c.434G>C	p.Arg145Pro	p.R145P	ENST00000523873		145	cGa/cCa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157454312	157454312	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	67	453	0	ENST00000346085.5:c.2522G>T	p.Gly841Val	p.G841V	ENST00000346085	NM_020732.3	841	gGt/gTt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953040	2953040	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			805	89	622	0	ENST00000396946.4:c.2900G>T	p.Arg967Leu	p.R967L	ENST00000396946	NM_032415.4	967	cGc/cTc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976855	2976855	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	70	560	0	ENST00000396946.4:c.1157G>T	p.Arg386Leu	p.R386L	ENST00000396946	NM_032415.4	386	cGa/cTa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729839	41729839	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			747	93	526	0	ENST00000242208.4:c.690G>C	p.Leu230Phe	p.L230F	ENST00000242208	NM_002192.2	230	ttG/ttC																																																																															
SMO	6608	MSKCC	GRCh37	7	128845465	128845466	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	69	474	0	ENST00000249373.3:c.762_763delinsCT	p.Asp255Tyr	p.D255Y	ENST00000249373	NM_005631.4	254	gcTGac/gcCTac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877109	151877109	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			824	80	603	0	ENST00000262189.6:c.7252G>T	p.Gly2418Trp	p.G2418W	ENST00000262189	NM_170606.2	2418	Ggg/Tgg																																																																															
TEK	7010	MSKCC	GRCh37	9	27157832	27157833	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	58	425	0	ENST00000380036.4:c.56_57del	p.Thr19SerfsTer18	p.T19Sfs*18	ENST00000380036	NM_000459.3	19	aCT/a																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87325626	87325626	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1369331924		P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	32	414	0	ENST00000277120.3:c.503G>T	p.Ser168Ile	p.S168I	ENST00000277120		168	aGt/aTt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405627	139405627	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	51	518	0	ENST00000277541.6:c.2564G>C	p.Cys855Ser	p.C855S	ENST00000277541	NM_017617.3	855	tGt/tCt																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1325389	1325389	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	43	465	0	ENST00000381566.1:c.286T>A	p.Tyr96Asn	p.Y96N	ENST00000381566		96	Tat/Aat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039407	47039407	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	92	579	0	ENST00000329236.7:c.799G>T	p.Gly267Cys	p.G267C	ENST00000329236	NM_001204466.1	267	Ggc/Tgc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600407	10600407	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs867398451		P-0064906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	111	671	0	ENST00000171111.5:c.1448G>T	p.Arg483Leu	p.R483L	ENST00000171111	NM_203500.1	483	cGc/cTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207203	1207204	+	splice_donor_variant	Splice_Site	DEL	GT	GT	-			P-0064906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	93	496	0	ENST00000326873.7:c.290+1_290+2del		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																																
ERCC5	2073	MSKCC	GRCh37	13	103513941	103513941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	65	370	0	ENST00000355739.4:c.757G>A	p.Glu253Lys	p.E253K	ENST00000355739	NM_000123.3	253	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0064906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	39	293	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098380	11098380	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	98	625	0	ENST00000344626.4:c.898C>T	p.Gln300Ter	p.Q300*	ENST00000344626	NM_003072.3	300	Cag/Tag																																																																															
NADK	65220	MSKCC	GRCh37	1	1686053	1686053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			791	91	696	0	ENST00000341426.5:c.773G>A	p.Gly258Glu	p.G258E	ENST00000341426	NM_023018.4	258	gGg/gAg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133813	41133813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	59	575	0	ENST00000379561.5:c.1815G>T	p.Met605Ile	p.M605I	ENST00000379561	NM_002015.3	605	atG/atT																																																																															
FANCA	2175	MSKCC	GRCh37	16	89877208	89877208	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0064906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	66	302	0	ENST00000389301.3:c.429G>C	p.Lys143Asn	p.K143N	ENST00000389301	NM_000135.2	143	aaG/aaC																																																																															
SPOP	8405	MSKCC	GRCh37	17	47700121	47700122	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0064906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	86	433	0	ENST00000347630.2:c.51dup	p.Val18ArgfsTer3	p.V18Rfs*3	ENST00000347630	NM_001007230.1	17	-/C																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719215	190719215	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	26	249	0	ENST00000441310.2:c.1217G>T	p.Cys406Phe	p.C406F	ENST00000441310	NM_000534.4	406	tGt/tTt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143129679	143129679	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	28	153	0	ENST00000262992.4:c.971C>A	p.Ser324Tyr	p.S324Y	ENST00000262992	NM_001101669.1	324	tCc/tAc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131977895	131977895	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1381323366		P-0064906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	49	308	0	ENST00000265335.6:c.3778C>T	p.Arg1260Cys	p.R1260C	ENST00000265335		1260	Cgt/Tgt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190467	32190467	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			786	113	698	0	ENST00000375023.3:c.272C>A	p.Pro91His	p.P91H	ENST00000375023	NM_004557.3	91	cCc/cAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545579	106545579	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1436898471		P-0064906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	75	346	0	ENST00000359195.3:c.3056C>T	p.Ala1019Val	p.A1019V	ENST00000359195	NM_002649.2	1019	gCc/gTc																																																																															
SMO	6608	MSKCC	GRCh37	7	128845130	128845130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064906-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	104	572	0	ENST00000249373.3:c.624G>T	p.Glu208Asp	p.E208D	ENST00000249373	NM_005631.4	208	gaG/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0064912-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	132	485	0	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
CSF3R	1441	MSKCC	GRCh37	1	36933434	36933434	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064912-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			737	97	711	1	ENST00000361632.4:c.1853C>A	p.Thr618Asn	p.T618N	ENST00000361632		618	aCc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0064914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	16	441	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0064914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	27	656	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210728	2210728	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745700742		P-0064914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	25	582	0	ENST00000398665.3:c.1225C>T	p.Arg409Cys	p.R409C	ENST00000398665	NM_032482.2	409	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0064914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	19	511	1	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278032	18278032	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756172410		P-0064914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	24	445	0	ENST00000222254.8:c.1652C>T	p.Ser551Leu	p.S551L	ENST00000222254	NM_005027.3	551	tCg/tTg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257874	19257874	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780635430		P-0064914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	23	689	0	ENST00000162023.5:c.512G>A	p.Arg171Gln	p.R171Q	ENST00000162023		171	cGa/cAa																																																																															
TET2	54790	MSKCC	GRCh37	4	106164751	106164751	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0064914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	14	376	0	ENST00000380013.4:c.3619G>T	p.Glu1207Ter	p.E1207*	ENST00000380013	NM_001127208.2	1207	Gag/Tag																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080656	5080656	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs769318116		P-0064914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	11	257	0	ENST00000381652.3:c.2407C>T	p.Arg803Ter	p.R803*	ENST00000381652	NM_004972.3	803	Cga/Tga																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436084	110436084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	22	632	0	ENST00000375856.3:c.2317G>A	p.Asp773Asn	p.D773N	ENST00000375856	NM_003749.2	773	Gac/Aac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432236	49432236	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750788651		P-0064914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	25	655	0	ENST00000301067.7:c.8903C>T	p.Pro2968Leu	p.P2968L	ENST00000301067	NM_003482.3	2968	cCg/cTg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936207	150936207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	18	506	0	ENST00000271640.5:c.3659G>A	p.Arg1220His	p.R1220H	ENST00000271640	NM_001145415.1	1220	cGc/cAc																																																																															
TET1	80312	MSKCC	GRCh37	10	70406426	70406426	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	26	454	0	ENST00000373644.4:c.3940G>T	p.Ala1314Ser	p.A1314S	ENST00000373644	NM_030625.2	1314	Gca/Tca																																																																															
YAP1	10413	MSKCC	GRCh37	11	102100502	102100502	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	20	420	0	ENST00000282441.5:c.1346C>A	p.Pro449His	p.P449H	ENST00000282441	NM_001130145.2	449	cCt/cAt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533131	63533131	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1305562386		P-0064914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	18	498	0	ENST00000307078.5:c.1763C>T	p.Pro588Leu	p.P588L	ENST00000307078	NM_004655.3	588	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112177441	112177442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0064914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	15	362	0	ENST00000257430.4:c.6155dup	p.Pro2053AlafsTer7	p.P2053Afs*7	ENST00000257430	NM_000038.5	2050	-/A																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146929	38146930	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0064914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	13	305	1	ENST00000317025.8:c.3212dup	p.Pro1072SerfsTer8	p.P1072Sfs*8	ENST00000317025	NM_023034.1	1071	cct/ccCt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628389	187628392	+	frameshift_variant	Frame_Shift_Del	DEL	TGTC	TGTC	-			P-0064914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	16	500	0	ENST00000441802.2:c.2590_2593del	p.Asp864GlnfsTer9	p.D864Qfs*9	ENST00000441802	NM_005245.3	864	GACAca/ca																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0064915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			709	89	478	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0064915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	15	196	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0064915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	129	554	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112170747	112170747	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0064915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	97	402	0	ENST00000257430.4:c.1847del	p.Leu616TrpfsTer14	p.L616Wfs*14	ENST00000257430	NM_000038.5	615	Ttt/tt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38172261	38172261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	1066	469	0	ENST00000317025.8:c.2146C>T	p.Pro716Ser	p.P716S	ENST00000317025	NM_023034.1	716	Cct/Tct																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38176443	38176443	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs368291633		P-0064915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	1208	272	1	ENST00000317025.8:c.1825C>G	p.Gln609Glu	p.Q609E	ENST00000317025	NM_023034.1	609	Cag/Gag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0064916-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	195	406	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578202	7578202	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520004		P-0064916-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	204	656	0	ENST00000269305.4:c.647T>G	p.Val216Gly	p.V216G	ENST00000269305	NM_001126112.2	216	gTg/gGg																																																																															
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0064916-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	229	621	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55224259	55224262	+	frameshift_variant	Frame_Shift_Del	DEL	ACTC	ACTC	-			P-0064916-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	108	425	0	ENST00000275493.2:c.1044_1047del	p.Leu349ProfsTer2	p.L349Pfs*2	ENST00000275493	NM_005228.3	347	gACTCa/ga																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0064962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	171	475	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0064962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	124	593	0	ENST00000275493.2:c.2303_2311dup	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261308	16261308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	177	772	0	ENST00000375759.3:c.8573C>T	p.Pro2858Leu	p.P2858L	ENST00000375759	NM_015001.2	2858	cCt/cTt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63845627	63845628	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0064962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	84	610	0	ENST00000279873.7:c.1367_1368insCA	p.Glu456AspfsTer24	p.E456Dfs*24	ENST00000279873	NM_032199.2	456	gaa/gACaa																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0064963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	85	614	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0064963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	129	527	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0064963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	204	673	0	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001303	29001303	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201407326		P-0064963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	157	555	1	ENST00000282397.4:c.1429G>A	p.Glu477Lys	p.E477K	ENST00000282397	NM_002019.4	477	Gaa/Aaa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450397	50450397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	72	726	0	ENST00000331340.3:c.581C>T	p.Thr194Met	p.T194M	ENST00000331340	NM_006060.4	194	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786204041		P-0064963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	231	817	3	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6042116	6042116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881916		P-0064963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	34	293	0	ENST00000265849.7:c.505C>T	p.Arg169Cys	p.R169C	ENST00000265849	NM_000535.5	169	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0064963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	247	383	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140534665	140534665	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	65	493	0	ENST00000288602.6:c.248A>T	p.Glu83Val	p.E83V	ENST00000288602	NM_004333.4	83	gAa/gTa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0064964-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	62	615	0				ENST00000310581	NM_198253.2																																																																																	
NTRK3	4916	MSKCC	GRCh37	15	88476265	88476265	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064964-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	114	474	0	ENST00000360948.2:c.1867G>A	p.Gly623Arg	p.G623R	ENST00000360948	NM_001012338.2	623	Gga/Aga																																																																															
ATM	472	MSKCC	GRCh37	11	108115733	108115733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064964-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	36	438	0	ENST00000278616.4:c.881G>T	p.Gly294Val	p.G294V	ENST00000278616	NM_000051.3	294	gGa/gTa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528987	157528987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064964-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	88	548	0	ENST00000346085.5:c.6712G>A	p.Val2238Ile	p.V2238I	ENST00000346085	NM_020732.3	2238	Gtc/Atc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057712	27057713	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0064973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	70	713	0	ENST00000324856.7:c.1423dup	p.Ser475LysfsTer148	p.S475Kfs*148	ENST00000324856	NM_006015.4	474	caa/cAaa																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46587800	46587800	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	65	423	1	ENST00000263734.3:c.478A>G	p.Lys160Glu	p.K160E	ENST00000263734	NM_001430.4	160	Aaa/Gaa																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818129	32818129	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	51	442	0	ENST00000354258.4:c.1396G>C	p.Val466Leu	p.V466L	ENST00000354258	NM_000593.5	466	Gtg/Ctg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0064975-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	42	624	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064975-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	116	658	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876659802		P-0064975-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	239	700	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128018820	128018820	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064975-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	61	500	0	ENST00000285398.2:c.2048A>T	p.Gln683Leu	p.Q683L	ENST00000285398	NM_000122.1	683	cAa/cTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434809	49434810	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	A			P-0064975-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	128	896	0	ENST00000301067.7:c.6743_6744delinsT	p.Arg2248LeufsTer16	p.R2248Lfs*16	ENST00000301067	NM_003482.3	2248	cGC/cT																																																																															
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660548		P-0064980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			919	135	888	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0064980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	130	643	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
FLCN	201163	MSKCC	GRCh37	17	17117130	17117130	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs879255683		P-0064980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	122	729	0	ENST00000285071.4:c.1579C>T	p.Arg527Ter	p.R527*	ENST00000285071	NM_144997.5	527	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579369	7579369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064985-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	774	608	0	ENST00000269305.4:c.318C>G	p.Ser106Arg	p.S106R	ENST00000269305	NM_001126112.2	106	agC/agG																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654681	67654681	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750256116		P-0064986-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	164	620	0	ENST00000264010.4:c.1168G>A	p.Asp390Asn	p.D390N	ENST00000264010	NM_006565.3	390	Gac/Aac																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7983145	7983145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064986-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	182	708	0	ENST00000319144.4:c.869C>T	p.Thr290Ile	p.T290I	ENST00000319144	NM_001139.2	290	aCa/aTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207061	1207076	+	frameshift_variant	Frame_Shift_Del	DEL	TGATGGGGGACCTGCT	TGATGGGGGACCTGCT	-			P-0064986-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	348	779	0	ENST00000326873.7:c.149_164del	p.Leu50ArgfsTer9	p.L50Rfs*9	ENST00000326873	NM_000455.4	50	cTGATGGGGGACCTGCTg/cg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244279	5244279	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064986-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	582	831	0	ENST00000357368.4:c.1203G>C	p.Trp401Cys	p.W401C	ENST00000357368	NM_002850.3	401	tgG/tgC																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600324	10600324	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0064986-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	324	779	0	ENST00000171111.5:c.1531G>T	p.Gly511Cys	p.G511C	ENST00000171111	NM_203500.1	511	Ggc/Tgc																																																																															
REL	5966	MSKCC	GRCh37	2	61121608	61121608	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064986-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	98	521	2	ENST00000295025.8:c.230A>G	p.His77Arg	p.H77R	ENST00000295025	NM_002908.2	77	cAt/cGt																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21348304	21348304	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0064986-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	270	979	0	ENST00000215739.8:c.1447del	p.Gln483ArgfsTer73	p.Q483Rfs*73	ENST00000215739	NM_006767.3	482	gCc/gc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289019	33289019	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064986-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			887	121	795	0	ENST00000374542.5:c.533C>G	p.Ser178Cys	p.S178C	ENST00000374542	NM_001141970.1	178	tCt/tGt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965410	68965410	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064986-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	104	540	1	ENST00000288368.4:c.1022G>T	p.Cys341Phe	p.C341F	ENST00000288368	NM_024870.2	341	tGt/tTt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300061	137300061	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754761323		P-0064986-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	237	670	0	ENST00000481739.1:c.346G>A	p.Val116Ile	p.V116I	ENST00000481739	NM_002957.4	116	Gtc/Atc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038828	47038828	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064986-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	187	357	0	ENST00000329236.7:c.604C>T	p.Gln202Ter	p.Q202*	ENST00000329236	NM_001204466.1	202	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0064989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	146	680	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032128	10032128	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747198986		P-0064989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	108	601	0	ENST00000330684.3:c.695C>T	p.Ser232Phe	p.S232F	ENST00000330684	NM_001134407.1	232	tCc/tTc																																																																															
NF2	4771	MSKCC	GRCh37	22	30051653	30051653	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749176138		P-0064989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	105	401	0	ENST00000338641.4:c.587G>A	p.Arg196Gln	p.R196Q	ENST00000338641	NM_000268.3	196	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	103	342	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11194430	11194430	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0064989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	115	553	0	ENST00000361445.4:c.5224del	p.Glu1742AsnfsTer11	p.E1742Nfs*11	ENST00000361445	NM_004958.3	1742	Gaa/aa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95590757	95590757	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0064989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	39	494	0	ENST00000343455.3:c.1152A>C	p.Leu384Phe	p.L384F	ENST00000343455	NM_177438.2	384	ttA/ttC																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857875	9857875	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	114	666	0	ENST00000330684.3:c.3526G>T	p.Glu1176Ter	p.E1176*	ENST00000330684	NM_001134407.1	1176	Gag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47158147	47158147	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0064989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	29	386	0	ENST00000409792.3:c.4552del	p.Glu1518LysfsTer9	p.E1518Kfs*9	ENST00000409792	NM_014159.6	1518	Gaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324093	31324093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	65	240	0	ENST00000412585.2:c.470G>C	p.Trp157Ser	p.W157S	ENST00000412585	NM_005514.6	157	tGg/tCg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729933	41729933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	123	630	0	ENST00000242208.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000242208	NM_002192.2	199	gGg/gTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81392129	81392129	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	22	376	0	ENST00000222390.5:c.148C>G	p.Leu50Val	p.L50V	ENST00000222390	NM_000601.4	50	Cta/Gta																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485889	8485889	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	207	600	0	ENST00000356435.5:c.2928C>A	p.Asp976Glu	p.D976E	ENST00000356435		976	gaC/gaA																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038831	47038831	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	41	646	0	ENST00000329236.7:c.607G>T	p.Gly203Ter	p.G203*	ENST00000329236	NM_001204466.1	203	Gga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0065002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			32	19	338	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
LMO1	4004	MSKCC	GRCh37	11	8252003	8252003	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	104	965	0	ENST00000335790.3:c.74C>A	p.Ala25Glu	p.A25E	ENST00000335790	NM_002315.2	25	gCg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576910	7576946	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAA	GGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAA	-			P-0065002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	23	780	0	ENST00000269305.4:c.920-20_936del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
DNMT1	1786	MSKCC	GRCh37	19	10251466	10251466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	45	803	0	ENST00000340748.4:c.3466C>A	p.His1156Asn	p.H1156N	ENST00000340748		1156	Cac/Aac																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662553	227662553	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	150	903	0	ENST00000305123.5:c.902G>C	p.Arg301Pro	p.R301P	ENST00000305123	NM_005544.2	301	cGc/cCc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62324291	62324291	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T			P-0065002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	108	877	0	ENST00000482936.1:c.2786C>T	p.Ala929Val	p.A929V	ENST00000482936		929	gCc/gTc																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427694	72427694	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs765645254		P-0065002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	15	659	0	ENST00000477973.2:c.794A>T	p.Thr266Ser	p.T266S	ENST00000477973	NM_012234.5	266	Act/Tct																																																																															
TERT	7015	MSKCC	GRCh37	5	1295270	1295270	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0065002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			764	76	895	0				ENST00000310581	NM_198253.2																																																																																	
MAP3K1	4214	MSKCC	GRCh37	5	56161803	56161803	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0065002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			11	18	247	0	ENST00000399503.3:c.1300A>G	p.Ser434Gly	p.S434G	ENST00000399503	NM_005921.1	434	Agc/Ggc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518382	8518382	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	47	566	0	ENST00000356435.5:c.1009A>G	p.Thr337Ala	p.T337A	ENST00000356435		337	Aca/Gca																																																																															
ABL1	25	MSKCC	GRCh37	9	133760756	133760756	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	81	753	0	ENST00000318560.5:c.3079A>G	p.Ile1027Val	p.I1027V	ENST00000318560	NM_005157.4	1027	Atc/Gtc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814733	139814733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0065002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	121	783	0	ENST00000247668.2:c.726G>T	p.Glu242Asp	p.E242D	ENST00000247668	NM_021138.3	242	gaG/gaT																																																																															
RET	5979	MSKCC	GRCh37	10	43606686	43606686	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs552057730		P-0065002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	38	894	0	ENST00000355710.3:c.1295C>T	p.Ala432Val	p.A432V	ENST00000355710	NM_020975.4	432	gCa/gTa																																																																															
PAK1	5058	MSKCC	GRCh37	11	77070044	77070044	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0065019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	223	373	0	ENST00000356341.3:c.496G>T	p.Glu166Ter	p.E166*	ENST00000356341	NM_002576.4	166	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427124	49427124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	245	610	0	ENST00000301067.7:c.11364G>T	p.Gln3788His	p.Q3788H	ENST00000301067	NM_003482.3	3788	caG/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0065019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	352	417	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872443	136872443	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	130	362	0	ENST00000241393.3:c.1055G>T	p.Ser352Ile	p.S352I	ENST00000241393	NM_003467.2	352	aGc/aTc																																																																															
ATR	545	MSKCC	GRCh37	3	142218547	142218547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	100	297	0	ENST00000350721.4:c.5302G>A	p.Asp1768Asn	p.D1768N	ENST00000350721	NM_001184.3	1768	Gat/Aat																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163785	32163785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0065019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			800	118	459	0	ENST00000375023.3:c.5441A>G	p.Asp1814Gly	p.D1814G	ENST00000375023	NM_004557.3	1814	gAt/gGt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681099	117681099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0065019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	64	408	0	ENST00000368508.3:c.3521T>C	p.Val1174Ala	p.V1174A	ENST00000368508	NM_002944.2	1174	gTt/gCt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527349	157527349	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	128	382	0	ENST00000346085.5:c.5074A>T	p.Ile1692Phe	p.I1692F	ENST00000346085	NM_020732.3	1692	Att/Ttt																																																																															
MET	4233	MSKCC	GRCh37	7	116423472	116423472	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0065019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	145	358	0	ENST00000397752.3:c.3747G>A	p.Trp1249Ter	p.W1249*	ENST00000397752	NM_000245.2	1249	tgG/tgA																																																																															
PREX2	80243	MSKCC	GRCh37	8	69129954	69129954	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0065019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			775	83	447	0	ENST00000288368.4:c.4707+1G>T		p.X1569_splice	ENST00000288368	NM_024870.2	1569																																																																																
SETDB1	9869	MSKCC	GRCh37	1	150917561	150917561	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	147	522	0	ENST00000271640.5:c.1117A>T	p.Ser373Cys	p.S373C	ENST00000271640	NM_001145415.1	373	Agc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0065039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	214	434	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1920111	1920115	+	stop_gained	Nonsense_Mutation	ONP	AGAGA	AGAGA	TGAGG			P-0065039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	205	614	0	ENST00000382895.3:c.1171_1175delinsTGAGG	p.Arg391_Glu392delinsTer	p.R391_E392delins*	ENST00000382895	NM_133330.2	391	AGAGAa/TGAGGa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143044517	143044517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0065039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	81	394	0	ENST00000262992.4:c.1945G>A	p.Asp649Asn	p.D649N	ENST00000262992	NM_001101669.1	649	Gac/Aac																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0065040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	115	341	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0065040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	237	483	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577507	7577507	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	235	400	0	ENST00000269305.4:c.774A>T	p.Glu258Asp	p.E258D	ENST00000269305	NM_001126112.2	258	gaA/gaT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921555	178921555	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0065040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	131	342	0	ENST00000263967.3:c.1037T>A	p.Val346Glu	p.V346E	ENST00000263967	NM_006218.2	346	gTa/gAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249501	153249501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1316840275		P-0065040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	156	475	0	ENST00000281708.4:c.1277C>T	p.Ser426Leu	p.S426L	ENST00000281708	NM_033632.3	426	tCa/tTa																																																																															
MGA	23269	MSKCC	GRCh37	15	42046766	42046766	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0065040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	217	442	0	ENST00000219905.7:c.7139+1G>A		p.X2380_splice	ENST00000219905	NM_001164273.1	2380																																																																																
NUP93	9688	MSKCC	GRCh37	16	56852610	56852610	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764790250		P-0065040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	158	395	0	ENST00000308159.5:c.524G>A	p.Arg175Gln	p.R175Q	ENST00000308159	NM_014669.4	175	cGa/cAa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2110710	2110710	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs559727962		P-0065040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	330	501	2	ENST00000219476.3:c.1015G>A	p.Val339Ile	p.V339I	ENST00000219476	NM_000548.3	339	Gtc/Atc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478915	56478915	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0065040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	214	482	0	ENST00000267101.3:c.371A>T	p.Asn124Ile	p.N124I	ENST00000267101	NM_001982.3	124	aAc/aTc																																																																															
BLM	641	MSKCC	GRCh37	15	91306381	91306381	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	149	388	0	ENST00000355112.3:c.2068C>A	p.Pro690Thr	p.P690T	ENST00000355112	NM_000057.2	690	Ccg/Acg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815823	32815823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	31	458	0	ENST00000354258.4:c.1793G>T	p.Gly598Val	p.G598V	ENST00000354258	NM_000593.5	598	gGa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0065041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	153	496	4	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0065041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	198	465	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs137854575		P-0065041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	169	540	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0065041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	174	565	5	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0065041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	211	496	8	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575671	48575671	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0065041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	47	304	0	ENST00000342988.3:c.431C>G	p.Ser144Ter	p.S144*	ENST00000342988	NM_005359.5	144	tCa/tGa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101908864	101908864	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	149	471	0	ENST00000374994.4:c.1228G>T	p.Glu410Ter	p.E410*	ENST00000374994	NM_004612.2	410	Gaa/Taa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65305339	65305339	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0065043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	54	633	0	ENST00000342505.4:c.2789G>C	p.Arg930Thr	p.R930T	ENST00000342505	NM_002227.2	930	aGg/aCg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912146	114912146	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0065043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	124	513	0	ENST00000543371.1:c.1216G>T	p.Glu406Ter	p.E406*	ENST00000543371	NM_001198531.1	406	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0065043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	75	389	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs794727798		P-0065043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	32	558	0	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0065043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	172	616	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
APC	324	MSKCC	GRCh37	5	112174352	112174353	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAGA			P-0065043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	87	480	0	ENST00000257430.4:c.3064_3067dup	p.Thr1023ArgfsTer7	p.T1023Rfs*7	ENST00000257430	NM_000038.5	1021	cta/cTAGAta																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0065043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	121	618	0	ENST00000257430.4:c.4473dup	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045963	26045963	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0065043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	137	745	0	ENST00000540144.1:c.325A>C	p.Asn109His	p.N109H	ENST00000540144	NM_003531.2	109	Aat/Cat																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226998	53226998	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0065043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	371	275	0	ENST00000375401.3:c.2577G>T	p.Gln859His	p.Q859H	ENST00000375401	NM_004187.3	859	caG/caT																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391146	89391146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034346-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			303	69	671	0	ENST00000336596.2:c.1212C>A	p.Asn404Lys	p.N404K	ENST00000336596	NM_005233.5	404	aaC/aaA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549890	187549890	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034346-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			300	54	436	0	ENST00000441802.2:c.4351G>T	p.Asp1451Tyr	p.D1451Y	ENST00000441802	NM_005245.3	1451	Gac/Tac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045187	47045187	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0034346-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			302	66	920	0	ENST00000329236.7:c.2194G>T	p.Glu732Ter	p.E732*	ENST00000329236	NM_001204466.1	732	Gag/Tag																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588125	69588125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034346-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			316	57	887	1	ENST00000168712.1:c.573C>A	p.Asn191Lys	p.N191K	ENST00000168712	NM_002007.2	191	aaC/aaA																																																																															
DIS3	22894	MSKCC	GRCh37	13	73335815	73335815	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034346-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			347	67	615	0	ENST00000377767.4:c.2480C>G	p.Ala827Gly	p.A827G	ENST00000377767	NM_014953.3	827	gCc/gGc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046553	30046553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034346-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			341	66	856	1	ENST00000331968.5:c.2630G>A	p.Gly877Glu	p.G877E	ENST00000331968	NM_002742.2	877	gGg/gAg																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51504618	51504618	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034346-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			335	64	778	0	ENST00000260433.2:c.1162G>T	p.Val388Leu	p.V388L	ENST00000260433		388	Gtg/Ttg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18960883	18960883	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0034346-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			254	65	576	0	ENST00000262803.5:c.462-1G>A		p.X154_splice	ENST00000262803	NM_002911.3	154																																																																																
HIST1H3G	8355	MSKCC	GRCh37	6	26271345	26271345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034346-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			476	76	954	0	ENST00000305910.3:c.268G>T	p.Val90Leu	p.V90L	ENST00000305910	NM_003534.2	90	Gtg/Ttg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94067985	94067985	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034346-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			315	49	545	0	ENST00000369303.4:c.977T>C	p.Val326Ala	p.V326A	ENST00000369303	NM_004440.3	326	gTt/gCt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50358680	50358680	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034346-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			255	97	443	0	ENST00000331340.3:c.23A>G	p.Asp8Gly	p.D8G	ENST00000331340	NM_006060.4	8	gAc/gGc																																																																															
MET	4233	MSKCC	GRCh37	7	116412030	116412046	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TACTTTTCCAGAAGGTA	TACTTTTCCAGAAGGTA	-			P-0034346-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			367	133	595	0	ENST00000397752.3:c.3017_3028+5del		p.X1006_splice	ENST00000397752	NM_000245.2	1006																																																																																
PAX5	5079	MSKCC	GRCh37	9	37002643	37002643	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0034346-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			234	61	864	0	ENST00000358127.4:c.604+2T>C		p.X202_splice	ENST00000358127	NM_001280556.1	202																																																																																
NTRK2	4915	MSKCC	GRCh37	9	87342671	87342671	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034346-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			374	76	632	0	ENST00000277120.3:c.956A>T	p.Tyr319Phe	p.Y319F	ENST00000277120		319	tAt/tTt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11194436	11194436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			449	210	482	0	ENST00000361445.4:c.5218A>G	p.Lys1740Glu	p.K1740E	ENST00000361445	NM_004958.3	1740	Aag/Gag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089778	27089778	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			458	234	566	0	ENST00000324856.7:c.2732+2T>C		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																																
STK40	83931	MSKCC	GRCh37	1	36824417	36824417	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759918440		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			468	207	434	0	ENST00000373129.3:c.119G>A	p.Arg40His	p.R40H	ENST00000373129	NM_032017.1	40	cGt/cAt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939417	36939417	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			627	277	649	0	ENST00000361632.4:c.433G>T	p.Glu145Ter	p.E145*	ENST00000361632		145	Gag/Tag																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797162	45797162	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			582	270	639	0	ENST00000372115.3:c.1211A>G	p.Lys404Arg	p.K404R	ENST00000372115	NM_001048171.1	404	aAg/aGg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46733130	46733130	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			411	154	405	0	ENST00000371975.4:c.892-1G>T		p.X298_splice	ENST00000371975	NM_003579.3	298																																																																																
NEGR1	257194	MSKCC	GRCh37	1	72400934	72400934	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			596	33	467	0	ENST00000357731.5:c.237del	p.Phe79LeufsTer18	p.F79Lfs*18	ENST00000357731	NM_173808.2	79	ttT/tt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843653	156843653	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371498291		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			645	322	715	1	ENST00000524377.1:c.1079C>T	p.Thr360Met	p.T360M	ENST00000524377	NM_002529.3	360	aCg/aTg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163306580	163306580	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			275	115	306	0	ENST00000271452.3:c.377A>G	p.Asn126Ser	p.N126S	ENST00000271452	NM_145697.2	126	aAc/aGc																																																																															
PARP1	142	MSKCC	GRCh37	1	226561958	226561958	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			399	206	418	0	ENST00000366794.5:c.2039A>G	p.Glu680Gly	p.E680G	ENST00000366794	NM_001618.3	680	gAa/gGa																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230468700	230468700	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759059657		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			462	225	627	0	ENST00000525115.1:c.956C>T	p.Pro319Leu	p.P319L	ENST00000525115		319	cCg/cTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717702	89717702	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			332	136	330	0	ENST00000371953.3:c.727T>C	p.Phe243Leu	p.F243L	ENST00000371953	NM_000314.4	243	Ttc/Ctc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123298192	123298192	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			402	183	455	0	ENST00000358487.5:c.662T>C	p.Val221Ala	p.V221A	ENST00000358487	NM_000141.4	221	gTg/gCg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137202	64137202	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1448724977		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			525	269	582	1	ENST00000334205.4:c.1634C>T	p.Ala545Val	p.A545V	ENST00000334205	NM_003942.2	545	gCc/gTc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77066886	77066886	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			368	193	359	0	ENST00000356341.3:c.599T>C	p.Val200Ala	p.V200A	ENST00000356341	NM_002576.4	200	gTa/gCa																																																																															
ATM	472	MSKCC	GRCh37	11	108196186	108196186	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs786202583		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			367	153	393	0	ENST00000278616.4:c.6722A>G	p.Asn2241Ser	p.N2241S	ENST00000278616	NM_000051.3	2241	aAc/aGc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18691152	18691152	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			357	142	341	0	ENST00000266497.5:c.3263A>C	p.Asn1088Thr	p.N1088T	ENST00000266497		1088	aAc/aCc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245708	46245708	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			676	110	625	0	ENST00000334344.6:c.3802A>G	p.Asn1268Asp	p.N1268D	ENST00000334344	NM_152641.2	1268	Aac/Gac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			614	262	700	2	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432396	49432396	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs587783729		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			609	271	695	0	ENST00000301067.7:c.8743C>T	p.Arg2915Ter	p.R2915*	ENST00000301067	NM_003482.3	2915	Cga/Tga																																																																															
MDM2	4193	MSKCC	GRCh37	12	69230484	69230484	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			301	139	350	0	ENST00000462284.1:c.873G>T	p.Glu291Asp	p.E291D	ENST00000462284	NM_002392.5	291	gaG/gaT																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813315	102813315	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761462868		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			447	210	537	0	ENST00000307046.8:c.374G>A	p.Arg125His	p.R125H	ENST00000307046	NM_001111285.1	125	cGc/cAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120704	115120704	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			489	250	657	0	ENST00000257566.3:c.302A>G	p.Asp101Gly	p.D101G	ENST00000257566	NM_016569.3	101	gAc/gGc																																																																															
POLE	5426	MSKCC	GRCh37	12	133254265	133254265	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			423	175	373	0	ENST00000320574.5:c.619A>G	p.Thr207Ala	p.T207A	ENST00000320574	NM_006231.2	207	Acc/Gcc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28597587	28597588	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			224	117	367	0	ENST00000241453.7:c.2317dup	p.Arg773LysfsTer14	p.R773Kfs*14	ENST00000241453	NM_004119.2	773	agg/aAgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937323	32937323	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			157	126	358	0	ENST00000380152.3:c.7984A>G	p.Thr2662Ala	p.T2662A	ENST00000380152		2662	Acg/Gcg																																																																															
RB1	5925	MSKCC	GRCh37	13	49027127	49027127	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			141	124	268	0	ENST00000267163.4:c.1696-2A>G		p.X566_splice	ENST00000267163	NM_000321.2	566																																																																																
TSHR	7253	MSKCC	GRCh37	14	81557457	81557457	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			299	133	340	0	ENST00000298171.2:c.437A>G	p.Lys146Arg	p.K146R	ENST00000298171	NM_000369.2	146	aAa/aGa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95571556	95571556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			350	156	411	0	ENST00000343455.3:c.3121C>T	p.His1041Tyr	p.H1041Y	ENST00000343455	NM_177438.2	1041	Cat/Tat																																																																															
DICER1	23405	MSKCC	GRCh37	14	95573957	95573957	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			347	146	354	0	ENST00000343455.3:c.2792T>C	p.Val931Ala	p.V931A	ENST00000343455	NM_177438.2	931	gTt/gCt																																																																															
AKT1	207	MSKCC	GRCh37	14	105241526	105241526	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			477	259	565	0	ENST00000349310.3:c.454T>C	p.Tyr152His	p.Y152H	ENST00000349310	NM_001014432.1	152	Tac/Cac																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40679379	40679379	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1434965351		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			353	165	321	0	ENST00000249776.8:c.457A>G	p.Thr153Ala	p.T153A	ENST00000249776	NM_033286.3	153	Act/Gct																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43713250	43713250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1392592073		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			479	209	511	0	ENST00000382044.4:c.4223G>A	p.Arg1408His	p.R1408H	ENST00000382044	NM_001141980.1	1408	cGc/cAc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43733727	43733727	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61758077		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			387	149	341	0	ENST00000382044.4:c.3095C>T	p.Ala1032Val	p.A1032V	ENST00000382044	NM_001141980.1	1032	gCc/gTc																																																																															
BLM	641	MSKCC	GRCh37	15	91295019	91295019	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			419	137	320	0	ENST00000355112.3:c.802A>G	p.Asn268Asp	p.N268D	ENST00000355112	NM_000057.2	268	Aat/Gat																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99250809	99250809	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			690	180	545	0	ENST00000268035.6:c.113A>G	p.Asp38Gly	p.D38G	ENST00000268035	NM_000875.3	38	gAc/gGc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467770	99467770	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			721	185	522	0	ENST00000268035.6:c.2639T>A	p.Val880Glu	p.V880E	ENST00000268035	NM_000875.3	880	gTg/gAg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs774532876		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			542	176	579	1	ENST00000294008.3:c.1406del	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786797	3786797	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			377	159	435	0	ENST00000262367.5:c.4414T>C	p.Trp1472Arg	p.W1472R	ENST00000262367	NM_004380.2	1472	Tgg/Cgg																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30129414	30129414	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			532	260	570	0	ENST00000263025.4:c.614T>C	p.Val205Ala	p.V205A	ENST00000263025	NM_002746.2	205	gTg/gCg																																																																															
CDH1	999	MSKCC	GRCh37	16	68845623	68845623	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			563	106	440	0	ENST00000261769.5:c.869A>G	p.Asp290Gly	p.D290G	ENST00000261769	NM_004360.3	290	gAc/gGc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828768	72828768	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			472	257	528	0	ENST00000268489.5:c.7813T>C	p.Ser2605Pro	p.S2605P	ENST00000268489	NM_006885.3	2605	Tca/Cca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			651	217	686	1	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346190	89346190	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1003478010		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			544	241	670	0	ENST00000301030.4:c.6760G>A	p.Gly2254Arg	p.G2254R	ENST00000301030	NM_001256183.1	2254	Gga/Aga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348230	89348230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			702	49	571	0	ENST00000301030.4:c.4720G>A	p.Gly1574Arg	p.G1574R	ENST00000301030	NM_001256183.1	1574	Ggg/Agg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216529	7216529	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			328	261	592	0	ENST00000380728.2:c.804+2T>C		p.X268_splice	ENST00000380728		268																																																																																
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			304	193	593	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29588751	29588751	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs760703505		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			224	140	384	0	ENST00000358273.4:c.4600C>T	p.Arg1534Ter	p.R1534*	ENST00000358273	NM_001042492.2	1534	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29667587	29667587	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			331	73	382	0	ENST00000358273.4:c.6986A>G	p.Asn2329Ser	p.N2329S	ENST00000358273	NM_001042492.2	2329	aAc/aGc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40874831	40874831	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			228	208	383	0	ENST00000428826.2:c.469A>G	p.Lys157Glu	p.K157E	ENST00000428826		157	Aaa/Gaa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246662	41246662	+	stop_gained	Nonsense_Mutation	SNP	T	T	A	rs748675395		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			363	84	485	0	ENST00000357654.3:c.886A>T	p.Arg296Ter	p.R296*	ENST00000357654	NM_007294.3	296	Aga/Tga																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59858343	59858343	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs375246789		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			296	131	335	0	ENST00000259008.2:c.1652C>A	p.Ala551Glu	p.A551E	ENST00000259008	NM_032043.2	551	gCg/gAg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63526196	63526196	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			442	184	446	0	ENST00000307078.5:c.2430T>G	p.Asp810Glu	p.D810E	ENST00000307078	NM_004655.3	810	gaT/gaG																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63526198	63526198	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140344858		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			428	201	495	0	ENST00000307078.5:c.2428G>A	p.Asp810Asn	p.D810N	ENST00000307078	NM_004655.3	810	Gat/Aat																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120022	70120022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			634	44	551	0	ENST00000245479.2:c.1024C>T	p.Pro342Ser	p.P342S	ENST00000245479	NM_000346.3	342	Ccg/Tcg																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733010	74733010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			491	226	580	0	ENST00000359995.5:c.233C>T	p.Ala78Val	p.A78V	ENST00000359995	NM_001195427.1	78	gCc/gTc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78617590	78617590	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			449	182	463	0	ENST00000306801.3:c.328T>C	p.Tyr110His	p.Y110H	ENST00000306801	NM_020761.2	110	Tac/Cac																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78919472	78919472	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			435	195	401	0	ENST00000306801.3:c.3031A>G	p.Thr1011Ala	p.T1011A	ENST00000306801	NM_020761.2	1011	Acg/Gcg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591880	48591880	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			474	218	538	0	ENST00000342988.3:c.1043T>C	p.Val348Ala	p.V348A	ENST00000342988	NM_005359.5	348	gTt/gCt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210512	5210512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			474	221	544	0	ENST00000357368.4:c.5455A>G	p.Ile1819Val	p.I1819V	ENST00000357368	NM_002850.3	1819	Atc/Gtc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274314	5274314	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761620469		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			466	180	538	0	ENST00000357368.4:c.133G>A	p.Val45Met	p.V45M	ENST00000357368	NM_002850.3	45	Gtg/Atg																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6270769	6270769	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			633	218	645	1	ENST00000252674.7:c.14G>A	p.Cys5Tyr	p.C5Y	ENST00000252674	NM_005934.3	5	tGc/tAc																																																																															
INSR	3643	MSKCC	GRCh37	19	7120722	7120722	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1448499462		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			482	200	487	0	ENST00000302850.5:c.3568T>C	p.Tyr1190His	p.Y1190H	ENST00000302850	NM_000208.2	1190	Tac/Cac																																																																															
CARM1	10498	MSKCC	GRCh37	19	11019830	11019830	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			554	240	622	1	ENST00000327064.4:c.505A>G	p.Thr169Ala	p.T169A	ENST00000327064	NM_199141.1	169	Aca/Gca																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101976	11101976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			522	224	505	0	ENST00000344626.4:c.1396C>T	p.Arg466Cys	p.R466C	ENST00000344626	NM_003072.3	466	Cgc/Tgc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132561	11132561	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			584	220	598	0	ENST00000344626.4:c.2777A>G	p.Asn926Ser	p.N926S	ENST00000344626	NM_003072.3	926	aAc/aGc																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14629161	14629161	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			451	195	492	0	ENST00000254322.2:c.1A>G	p.Met1?	p.M1?	ENST00000254322	NM_006145.1	1	Atg/Gtg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302448	15302448	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750260409		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			611	233	658	0	ENST00000263388.2:c.823G>A	p.Val275Met	p.V275M	ENST00000263388	NM_000435.2	275	Gtg/Atg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354182	15354182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			392	154	463	0	ENST00000263377.2:c.2698C>T	p.Leu900Phe	p.L900F	ENST00000263377	NM_058243.2	900	Ctc/Ttc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15379832	15379832	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			339	135	359	0	ENST00000263377.2:c.307A>G	p.Thr103Ala	p.T103A	ENST00000263377	NM_058243.2	103	Acg/Gcg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15383717	15383717	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			579	220	602	0	ENST00000263377.2:c.194A>G	p.Tyr65Cys	p.Y65C	ENST00000263377	NM_058243.2	65	tAc/tGc																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792803	33792803	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1488417025		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			348	130	371	0	ENST00000498907.2:c.518T>C	p.Leu173Pro	p.L173P	ENST00000498907	NM_004364.3	173	cTg/cCg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212177	36212177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			251	122	332	0	ENST00000222270.7:c.1928G>A	p.Arg643Lys	p.R643K	ENST00000222270	NM_014727.1	643	aGg/aAg																																																																															
AKT2	208	MSKCC	GRCh37	19	40762854	40762855	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1444704050		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			614	34	512	0	ENST00000392038.2:c.153dup	p.Asn53LysfsTer77	p.N53Kfs*77	ENST00000392038	NM_001626.4	51	-/C																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			662	315	734	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
CIC	23152	MSKCC	GRCh37	19	42795600	42795600	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			663	276	835	0	ENST00000575354.2:c.2680T>C	p.Ser894Pro	p.S894P	ENST00000575354	NM_015125.3	894	Tcc/Ccc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910250	50910250	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1313176102		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			464	42	411	0	ENST00000440232.2:c.1505A>G	p.Asp502Gly	p.D502G	ENST00000440232	NM_002691.3	502	gAc/gGc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714583	52714583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			664	42	603	1	ENST00000322088.6:c.341C>T	p.Ala114Val	p.A114V	ENST00000322088	NM_014225.5	114	gCc/gTc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464460	25464460	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779176507		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			213	147	484	0	ENST00000264709.3:c.2053G>A	p.Gly685Arg	p.G685R	ENST00000264709	NM_175629.2	685	Ggg/Agg																																																																															
ALK	238	MSKCC	GRCh37	2	29451784	29451784	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772809305		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			140	81	178	0	ENST00000389048.3:c.2781del	p.Cys928AlafsTer11	p.C928Afs*11	ENST00000389048	NM_004304.4	927	ggG/gg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47656984	47656984	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			165	125	363	0	ENST00000233146.2:c.1180T>C	p.Phe394Leu	p.F394L	ENST00000233146	NM_000251.2	394	Ttt/Ctt																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631819	67631819	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			233	179	401	0	ENST00000272342.5:c.2005A>G	p.Asn669Asp	p.N669D	ENST00000272342	NM_019002.3	669	Aat/Gat																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99172172	99172172	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372688727		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			594	240	689	0	ENST00000074304.5:c.1738G>A	p.Ala580Thr	p.A580T	ENST00000074304	NM_001134224.1	580	Gcc/Acc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128047382	128047382	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			416	221	470	0	ENST00000285398.2:c.540C>A	p.Cys180Ter	p.C180*	ENST00000285398	NM_000122.1	180	tgC/tgA																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198264857	198264857	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			396	158	414	0	ENST00000335508.6:c.2935T>C	p.Tyr979His	p.Y979H	ENST00000335508	NM_012433.2	979	Tat/Cat																																																																															
BARD1	580	MSKCC	GRCh37	2	215645459	215645459	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1172376225		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			463	212	487	0	ENST00000260947.4:c.1139A>G	p.Asn380Ser	p.N380S	ENST00000260947	NM_000465.2	380	aAc/aGc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31019228	31019228	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			480	202	482	0	ENST00000375687.4:c.823G>C	p.Ala275Pro	p.A275P	ENST00000375687	NM_015338.5	275	Gcc/Ccc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			635	197	586	10	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022634	31022634	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			586	226	693	0	ENST00000375687.4:c.2119A>G	p.Thr707Ala	p.T707A	ENST00000375687	NM_015338.5	707	Acc/Gcc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31368214	31368214	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775216151		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			507	231	613	0	ENST00000328111.2:c.85G>A	p.Asp29Asn	p.D29N	ENST00000328111	NM_006892.3	29	Gac/Aac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739077	40739077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			430	161	495	0	ENST00000373198.4:c.3207G>T	p.Trp1069Cys	p.W1069C	ENST00000373198	NM_133170.3	1069	tgG/tgT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40757459	40757459	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1303277916		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			439	169	499	1	ENST00000373198.4:c.2839C>T	p.Arg947Trp	p.R947W	ENST00000373198	NM_133170.3	947	Cgg/Tgg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164578	36164578	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			424	183	476	0	ENST00000300305.3:c.1297A>G	p.Thr433Ala	p.T433A	ENST00000300305		433	Acc/Gcc																																																																															
EP300	2033	MSKCC	GRCh37	22	41574371	41574371	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			502	96	615	0	ENST00000263253.7:c.6656A>G	p.Tyr2219Cys	p.Y2219C	ENST00000263253	NM_001429.3	2219	tAc/tGc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266619	41266619	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			255	207	474	0	ENST00000349496.5:c.416T>C	p.Leu139Ser	p.L139S	ENST00000349496	NM_001904.3	139	tTg/tCg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162561	47162561	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			193	161	461	0	ENST00000409792.3:c.3565A>G	p.Thr1189Ala	p.T1189A	ENST00000409792	NM_014159.6	1189	Acc/Gcc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119562167	119562167	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			462	207	421	1	ENST00000316626.5:c.1169T>C	p.Leu390Pro	p.L390P	ENST00000316626		390	cTt/cCt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200148	128200148	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			460	208	529	0	ENST00000341105.2:c.1157T>C	p.Leu386Pro	p.L386P	ENST00000341105	NM_032638.4	386	cTg/cCg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670328	134670328	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			496	168	484	2	ENST00000398015.3:c.244del	p.Ala82ProfsTer12	p.A82Pfs*12	ENST00000398015	NM_004441.4	80	cGg/cg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186503738	186503738	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			411	167	366	0	ENST00000323963.5:c.415A>G	p.Thr139Ala	p.T139A	ENST00000323963		139	Aca/Gca																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1941386	1941386	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			376	147	392	1	ENST00000382895.3:c.1766del	p.Asn589IlefsTer9	p.N589Ifs*9	ENST00000382895	NM_133330.2	588	Aaa/aa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			542	216	645	2	ENST00000382895.3:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382895	NM_133330.2	1341	Ccc/cc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133814	55133814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			426	160	453	0	ENST00000257290.5:c.1027C>A	p.Pro343Thr	p.P343T	ENST00000257290	NM_006206.4	343	Cca/Aca																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161434	55161434	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			376	167	401	0	ENST00000257290.5:c.3265C>A	p.Leu1089Met	p.L1089M	ENST00000257290	NM_006206.4	1089	Ctg/Atg																																																																															
KDR	3791	MSKCC	GRCh37	4	55984933	55984933	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			304	156	368	0	ENST00000263923.4:c.196A>T	p.Asn66Tyr	p.N66Y	ENST00000263923	NM_002253.2	66	Aat/Tat																																																																															
REST	5978	MSKCC	GRCh37	4	57797005	57797005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			621	315	795	0	ENST00000309042.7:c.1981C>T	p.Pro661Ser	p.P661S	ENST00000309042	NM_005612.4	661	Cct/Tct																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509110	66509110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			306	103	298	0	ENST00000273854.3:c.217C>A	p.Leu73Met	p.L73M	ENST00000273854	NM_004439.5	73	Ctg/Atg																																																																															
TET2	54790	MSKCC	GRCh37	4	106157039	106157039	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs763505294		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			517	259	592	0	ENST00000380013.4:c.1940T>C	p.Val647Ala	p.V647A	ENST00000380013	NM_001127208.2	647	gTg/gCg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143130114	143130114	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			324	131	332	0	ENST00000262992.4:c.902T>C	p.Leu301Pro	p.L301P	ENST00000262992	NM_001101669.1	301	cTt/cCt																																																																															
GAB1	2549	MSKCC	GRCh37	4	144258415	144258415	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			500	71	440	0	ENST00000262994.4:c.72+2T>C		p.X24_splice	ENST00000262994	NM_002039.3	24																																																																																
TERT	7015	MSKCC	GRCh37	5	1295752	1295752	+	upstream_gene_variant	5'Flank	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			654	252	749	0				ENST00000310581	NM_198253.2																																																																																	
DROSHA	29102	MSKCC	GRCh37	5	31451666	31451666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			350	132	334	0	ENST00000344624.3:c.2656A>G	p.Thr886Ala	p.T886A	ENST00000344624		886	Act/Gct																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31495475	31495475	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			553	55	446	1	ENST00000344624.3:c.1673T>C	p.Ile558Thr	p.I558T	ENST00000344624		558	aTc/aCc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589648	67589648	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			300	134	328	0	ENST00000274335.5:c.1411A>G	p.Thr471Ala	p.T471A	ENST00000274335		471	Acc/Gcc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			390	167	377	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522432	176522432	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			481	238	594	0	ENST00000292408.4:c.1621A>G	p.Thr541Ala	p.T541A	ENST00000292408	NM_213647.1	541	Acc/Gcc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562196	176562196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			496	249	541	0	ENST00000439151.2:c.92C>A	p.Pro31His	p.P31H	ENST00000439151	NM_022455.4	31	cCt/cAt																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045934	26045934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			368	320	790	0	ENST00000540144.1:c.296C>T	p.Ala99Val	p.A99V	ENST00000540144	NM_003531.2	99	gCc/gTc																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26046012	26046012	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			291	223	624	0	ENST00000540144.1:c.374T>A	p.Ile125Asn	p.I125N	ENST00000540144	NM_003531.2	125	aTc/aAc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911141	29911141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			221	75	367	0	ENST00000376809.5:c.440A>G	p.Tyr147Cys	p.Y147C	ENST00000376809	NM_002116.7	147	tAc/tGc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675588	30675588	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			267	227	568	0	ENST00000376406.3:c.2768T>C	p.Val923Ala	p.V923A	ENST00000376406	NM_014641.2	923	gTa/gCa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324717	31324717	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			280	336	519	0	ENST00000412585.2:c.91T>C	p.Tyr31His	p.Y31H	ENST00000412585	NM_005514.6	31	Tat/Cat																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43745343	43745343	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			420	259	592	0	ENST00000523873.1:c.256T>C	p.Cys86Arg	p.C86R	ENST00000523873		86	Tgc/Cgc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979300	93979300	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			566	40	467	0	ENST00000369303.4:c.1528G>T	p.Val510Leu	p.V510L	ENST00000369303	NM_004440.3	510	Gtg/Ttg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553171	106553171	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368185616		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			551	229	575	0	ENST00000369096.4:c.1136C>T	p.Ala379Val	p.A379V	ENST00000369096	NM_001198.3	379	gCg/gTg																																																																															
FYN	2534	MSKCC	GRCh37	6	112015592	112015592	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			438	172	515	0	ENST00000368678.4:c.1250A>G	p.Tyr417Cys	p.Y417C	ENST00000368678		417	tAc/tGc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129213	152129213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			472	271	615	0	ENST00000206249.3:c.166G>A	p.Glu56Lys	p.E56K	ENST00000206249	NM_000125.3	56	Gag/Aag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157469764	157469764	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			484	215	542	0	ENST00000346085.5:c.2558A>G	p.Tyr853Cys	p.Y853C	ENST00000346085	NM_020732.3	853	tAc/tGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240750	55240750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			568	272	600	0	ENST00000275493.2:c.1994G>A	p.Gly665Asp	p.G665D	ENST00000275493	NM_005228.3	665	gGc/gAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273119	55273119	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			475	211	550	0	ENST00000275493.2:c.3442A>G	p.Asn1148Asp	p.N1148D	ENST00000275493	NM_005228.3	1148	Aac/Gac																																																																															
CDK6	1021	MSKCC	GRCh37	7	92354966	92354966	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			427	181	447	0	ENST00000265734.4:c.511A>G	p.Ser171Gly	p.S171G	ENST00000265734	NM_001259.6	171	Agt/Ggt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853011	151853011	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			378	174	504	0	ENST00000262189.6:c.11944A>G	p.Asn3982Asp	p.N3982D	ENST00000262189	NM_170606.2	3982	Aat/Gat																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372093	55372093	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			562	227	632	2	ENST00000297316.4:c.788del	p.Pro263ArgfsTer124	p.P263Rfs*124	ENST00000297316	NM_022454.3	261	ggC/gg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68984765	68984765	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			308	149	319	0	ENST00000288368.4:c.1529T>C	p.Val510Ala	p.V510A	ENST00000288368	NM_024870.2	510	gTg/gCg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738802	145738802	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1269867447		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			856	356	897	2	ENST00000428558.2:c.2263C>T	p.Arg755Trp	p.R755W	ENST00000428558	NM_004260.3	755	Cgg/Tgg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739020	145739020	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			568	232	644	0	ENST00000428558.2:c.2135A>G	p.Asp712Gly	p.D712G	ENST00000428558	NM_004260.3	712	gAc/gGc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742525	145742525	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			491	207	557	0	ENST00000428558.2:c.263A>G	p.Lys88Arg	p.K88R	ENST00000428558	NM_004260.3	88	aAg/aGg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742534	145742534	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756838362		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			514	209	558	0	ENST00000428558.2:c.254C>T	p.Ala85Val	p.A85V	ENST00000428558	NM_004260.3	85	gCt/gTt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069923	5069923	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			130	109	274	0	ENST00000381652.3:c.1514-2A>G		p.X505_splice	ENST00000381652	NM_004972.3	505																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8526642	8526642	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			150	111	307	0	ENST00000356435.5:c.553G>A	p.Gly185Ser	p.G185S	ENST00000356435		185	Ggt/Agt																																																																															
MTAP	4507	MSKCC	GRCh37	9	21818108	21818108	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1292959582		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			197	140	437	0	ENST00000380172.4:c.254G>A	p.Gly85Asp	p.G85D	ENST00000380172	NM_002451.3	85	gGc/gAc																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020768	37020769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs767894241		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			500	151	452	0	ENST00000358127.4:c.76dup	p.Val26GlyfsTer49	p.V26Gfs*49	ENST00000358127	NM_001280556.1	26	gtt/gGtt																																																																															
FANCC	2176	MSKCC	GRCh37	9	97876968	97876968	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			345	143	368	0	ENST00000289081.3:c.1097A>G	p.Gln366Arg	p.Q366R	ENST00000289081	NM_000136.2	366	cAg/cGg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250040	110250040	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			475	185	494	0	ENST00000374672.4:c.635A>G	p.Tyr212Cys	p.Y212C	ENST00000374672	NM_004235.4	212	tAc/tGc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402780	139402780	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			533	239	632	0	ENST00000277541.6:c.3229A>G	p.Thr1077Ala	p.T1077A	ENST00000277541	NM_017617.3	1077	Acc/Gcc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139404254	139404254	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1433433969		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			557	248	610	0	ENST00000277541.6:c.2900A>G	p.Tyr967Cys	p.Y967C	ENST00000277541	NM_017617.3	967	tAc/tGc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412354	139412354	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			550	220	592	0	ENST00000277541.6:c.1291A>G	p.Asn431Asp	p.N431D	ENST00000277541	NM_017617.3	431	Aac/Gac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923070	39923070	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			258	234	560	0	ENST00000378444.4:c.3638A>G	p.His1213Arg	p.H1213R	ENST00000378444	NM_001123385.1	1213	cAc/cGc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44937723	44937723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			282	156	319	0	ENST00000377967.4:c.2911C>T	p.Arg971Cys	p.R971C	ENST00000377967	NM_021140.2	971	Cgt/Tgt																																																																															
ARAF	369	MSKCC	GRCh37	X	47429036	47429036	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			508	234	612	0	ENST00000377045.4:c.1399T>C	p.Ser467Pro	p.S467P	ENST00000377045	NM_001654.4	467	Tca/Cca																																																																															
MED12	9968	MSKCC	GRCh37	X	70351469	70351469	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G	rs755920101		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			419	188	412	0	ENST00000374080.3:c.4117A>G	p.Asn1373Asp	p.N1373D	ENST00000374080		1373	Aat/Gat																																																																															
MED12	9968	MSKCC	GRCh37	X	70355035	70355035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			440	261	528	0	ENST00000374080.3:c.4957C>T	p.Pro1653Ser	p.P1653S	ENST00000374080		1653	Cca/Tca																																																																															
ATRX	546	MSKCC	GRCh37	X	76872102	76872102	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			364	28	354	0	ENST00000373344.5:c.5545T>C	p.Tyr1849His	p.Y1849H	ENST00000373344	NM_000489.3	1849	Tac/Cac																																																																															
TERT	7015	MSKCC	GRCh37	5	1296485	1296485	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			76	32	93	0				ENST00000310581	NM_198253.2																																																																																	
ZFHX3	463	MSKCC	GRCh37	16	72831357	72831358	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTG	rs552138038		P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			566	145	561	0	ENST00000268489.5:c.5221_5223dup	p.Gln1741dup	p.Q1741dup	ENST00000268489	NM_006885.3	1741	-/CAA																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659840	227659841	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0061835-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			245	68	386	0	ENST00000305123.5:c.3614dup	p.Pro1206ThrfsTer10	p.P1206Tfs*10	ENST00000305123	NM_005544.2	1205	cca/ccCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0064596-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			861	216	764	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064596-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1120	236	820	0	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115979	8115980	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0064596-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			784	179	692	0	ENST00000346208.3:c.1328dup	p.Ter444LeufsTer63	p.*444Lfs*63	ENST00000346208		442	atg/atGg																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27840008	27840008	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064596-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1698	259	1059	0	ENST00000328488.2:c.86G>C	p.Ser29Thr	p.S29T	ENST00000328488	NM_003533.2	29	aGc/aCc																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0064703-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			748	95	1026	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0064703-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	104	856	0	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578196	7578196	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0064703-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	128	1076	0	ENST00000269305.4:c.653T>G	p.Val218Gly	p.V218G	ENST00000269305	NM_001126112.2	218	gTg/gGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0064703-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	42	473	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FYN	2534	MSKCC	GRCh37	6	112020820	112020820	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064703-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	93	692	0	ENST00000368678.4:c.751C>A	p.Pro251Thr	p.P251T	ENST00000368678		251	Cca/Aca																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411728	63411728	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0064703-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	95	620	0	ENST00000330258.3:c.1439del	p.Glu480GlyfsTer61	p.E480Gfs*61	ENST00000330258	NM_152424.3	480	gAg/gg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0064767-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	28	382	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0064767-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	57	473	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111467	56111467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064767-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	26	453	0	ENST00000399503.3:c.67G>A	p.Glu23Lys	p.E23K	ENST00000399503	NM_005921.1	23	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0064770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			49	53	472	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074171	8074171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	62	460	0	ENST00000377482.5:c.488C>T	p.Ser163Phe	p.S163F	ENST00000377482	NM_018948.3	163	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0064770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			45	33	308	0	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																															
RAD51B	5890	MSKCC	GRCh37	14	69061225	69061225	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			66	11	194	0	ENST00000487270.1:c.1060C>T	p.Gln354Ter	p.Q354*	ENST00000487270	NM_133509.3	354	Caa/Taa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479787	67479787	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0064770-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	21	376	0	ENST00000327367.4:c.1094A>C	p.Gln365Pro	p.Q365P	ENST00000327367	NM_005902.3	365	cAg/cCg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812182	212812182	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064781-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	76	486	0	ENST00000342788.4:c.394C>T	p.Gln132Ter	p.Q132*	ENST00000342788	NM_005235.2	132	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579365	7579365	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782461		P-0064781-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	218	600	0	ENST00000269305.4:c.322G>T	p.Gly108Cys	p.G108C	ENST00000269305	NM_001126112.2	108	Ggt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0064781-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	118	318	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748512	162748512	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064781-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	331	487	0	ENST00000367921.3:c.2426G>C	p.Gly809Ala	p.G809A	ENST00000367921	NM_006182.2	809	gGg/gCg																																																																															
SCG5	6447	MSKCC	GRCh37	15	32976867	32976867	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064781-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	165	450	0	ENST00000300175.4:c.486G>T	p.Lys162Asn	p.K162N	ENST00000300175	NM_001144757.1	162	aaG/aaT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610237	10610237	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064781-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	218	612	0	ENST00000171111.5:c.473G>T	p.Gly158Val	p.G158V	ENST00000171111	NM_203500.1	158	gGt/gTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610276	10610276	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0064781-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	234	647	0	ENST00000171111.5:c.434T>G	p.Ile145Ser	p.I145S	ENST00000171111	NM_203500.1	145	aTc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0064796-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	124	376	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427227	49427227	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064796-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	117	549	0	ENST00000301067.7:c.11261A>T	p.Gln3754Leu	p.Q3754L	ENST00000301067	NM_003482.3	3754	cAg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0064830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	53	1388	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0064830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	101	1514	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0064830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	32	908	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
KLF5	688	MSKCC	GRCh37	13	73636650	73636650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	113	1764	0	ENST00000377687.4:c.913C>T	p.Pro305Ser	p.P305S	ENST00000377687	NM_001730.3	305	Cca/Tca																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479822	67479822	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	24	1331	0	ENST00000327367.4:c.1129G>C	p.Val377Leu	p.V377L	ENST00000327367	NM_005902.3	377	Gtc/Ctc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7976533	7976533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	53	1131	1	ENST00000319144.4:c.1859C>T	p.Pro620Leu	p.P620L	ENST00000319144	NM_001139.2	620	cCg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714390	40714391	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0064830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	116	1332	0	ENST00000373198.4:c.4005_4006dup	p.Phe1336TyrfsTer16	p.F1336Yfs*16	ENST00000373198	NM_133170.3	1336	ttc/tATtc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522609	67522610	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0064830-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	70	1385	0	ENST00000274335.5:c.108dup	p.Val38SerfsTer7	p.V38Sfs*7	ENST00000274335		36	tcc/tCcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0064831-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	35	363	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0064837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	119	837	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106621	27106621	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0064837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	152	944	0	ENST00000324856.7:c.6232G>T	p.Glu2078Ter	p.E2078*	ENST00000324856	NM_006015.4	2078	Gag/Tag																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154251	2154251	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0064837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	79	838	0	ENST00000434045.2:c.677del	p.Gly226AlafsTer30	p.G226Afs*30	ENST00000434045	NM_001127598.1	226	gGc/gc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2112558	2112558	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45484298		P-0064837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	102	727	0	ENST00000219476.3:c.1318G>A	p.Gly440Ser	p.G440S	ENST00000219476	NM_000548.3	440	Ggc/Agc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073643	8073643	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746627277		P-0064837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	30	876	0	ENST00000377482.5:c.1016C>T	p.Pro339Leu	p.P339L	ENST00000377482	NM_018948.3	339	cCg/cTg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098966	178098966	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	156	645	0	ENST00000397062.3:c.79G>C	p.Asp27His	p.D27H	ENST00000397062	NM_006164.4	27	Gat/Cat																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731195	162731195	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	51	849	0	ENST00000367921.3:c.1050C>A	p.Tyr350Ter	p.Y350*	ENST00000367921	NM_006182.2	350	taC/taA																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200880	67200880	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370899912		P-0064837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	102	825	0	ENST00000312629.5:c.868C>T	p.Pro290Ser	p.P290S	ENST00000312629	NM_003952.2	290	Ccc/Tcc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46125089	46125089	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0064837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	51	601	0	ENST00000334344.6:c.276T>G	p.Tyr92Ter	p.Y92*	ENST00000334344	NM_152641.2	92	taT/taG																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023129	33023129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1312888226		P-0064837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	89	761	0	ENST00000300177.4:c.238G>A	p.Ala80Thr	p.A80T	ENST00000300177	NM_001191322.1	80	Gcc/Acc																																																																															
NF1	4763	MSKCC	GRCh37	17	29527477	29527477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	70	569	0	ENST00000358273.4:c.926G>T	p.Gly309Val	p.G309V	ENST00000358273	NM_001042492.2	309	gGc/gTc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41222964	41222964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	116	773	1	ENST00000357654.3:c.4967G>T	p.Gly1656Val	p.G1656V	ENST00000357654	NM_007294.3	1656	gGc/gTc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615799	1615799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145054379		P-0064837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	13	747	0	ENST00000344749.5:c.1472C>T	p.Thr491Met	p.T491M	ENST00000344749	NM_001136139.2	491	aCg/aTg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607468	46607468	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	88	862	0	ENST00000263734.3:c.1657G>T	p.Ala553Ser	p.A553S	ENST00000263734	NM_001430.4	553	Gcg/Tcg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259060	89259061	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CC	CC	-			P-0064837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	29	701	0	ENST00000336596.2:c.204_205del	p.Tyr68Ter	p.Y68*	ENST00000336596	NM_005233.5	68	taCCag/taag																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204681	128204681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	168	821	0	ENST00000341105.2:c.760C>A	p.Pro254Thr	p.P254T	ENST00000341105	NM_032638.4	254	Ccg/Acg																																																																															
GAB1	2549	MSKCC	GRCh37	4	144359249	144359249	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0064837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	114	721	0	ENST00000262994.4:c.691G>T	p.Gly231Ter	p.G231*	ENST00000262994	NM_002039.3	231	Gga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175330	112175330	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	61	713	0	ENST00000257430.4:c.4039G>T	p.Ala1347Ser	p.A1347S	ENST00000257430	NM_000038.5	1347	Gcc/Tcc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271734	38271734	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064837-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	78	896	0	ENST00000425967.3:c.2215G>T	p.Glu739Ter	p.E739*	ENST00000425967	NM_001174067.1	739	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs786203436		P-0055109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			426	66	924	0	ENST00000269305.4:c.487T>G	p.Tyr163Asp	p.Y163D	ENST00000269305	NM_001126112.2	163	Tac/Gac																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324615	31324615	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1050529		P-0055109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	16	333	2	ENST00000412585.2:c.193G>A	p.Ala65Thr	p.A65T	ENST00000412585	NM_005514.6	65	Gcg/Acg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0055109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	152	363	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753660142		P-0064741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	202	568	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692943	89692956	+	frameshift_variant	Frame_Shift_Del	DEL	GGCAAATTTTTAAA	GGCAAATTTTTAAA	-			P-0064741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	209	478	0	ENST00000371953.3:c.431_444del	p.Lys144ThrfsTer31	p.K144Tfs*31	ENST00000371953	NM_000314.4	143	GGCAAATTTTTAAAg/g																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264222	46264222	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	252	507	0	ENST00000371998.3:c.1269C>G	p.Ser423Arg	p.S423R	ENST00000371998		423	agC/agG																																																																															
TEK	7010	MSKCC	GRCh37	9	27212759	27212759	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064741-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	203	504	0	ENST00000380036.4:c.2741T>A	p.Leu914His	p.L914H	ENST00000380036	NM_000459.3	914	cTt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0064726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	170	770	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459758	149459758	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1029057991		P-0064726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	240	810	0	ENST00000286301.3:c.449G>A	p.Arg150His	p.R150H	ENST00000286301	NM_005211.3	150	cGc/cAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933904	39933904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	129	396	0	ENST00000378444.4:c.695C>T	p.Pro232Leu	p.P232L	ENST00000378444	NM_001123385.1	232	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0064726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	111	350	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971140	21971140	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	87	771	0	ENST00000304494.5:c.218C>G	p.Ala73Gly	p.A73G	ENST00000304494	NM_000077.4	73	gCc/gGc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971147	21971183	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCAC	TGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCAC	-			P-0064726-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	78	781	0	ENST00000304494.5:c.175_211del	p.Val59ThrfsTer75	p.V59Tfs*75	ENST00000304494	NM_000077.4	59	GTGGCGGAGCTGCTGCTGCTCCACGGCGCGGAGCCCAac/ac																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0064727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			881	221	860	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492904	56492905	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0064727-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1408	167	637	0	ENST00000407977.2:c.34dup	p.Leu12ProfsTer28	p.L12Pfs*28	ENST00000407977		12	ctc/cCtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024249-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			512	42	336	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
POLE	5426	MSKCC	GRCh37	12	133241894	133241894	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024249-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			858	64	658	0	ENST00000320574.5:c.2462G>T	p.Arg821Leu	p.R821L	ENST00000320574	NM_006231.2	821	cGc/cTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0042261-T15-IM7									Unknown	SOMATIC				MSK-IMPACT			578	134	525	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135779102	135779102	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs986350787		P-0042261-T15-IM7									Unknown	SOMATIC				MSK-IMPACT			470	52	525	0	ENST00000298552.3:c.2144G>A	p.Arg715Gln	p.R715Q	ENST00000298552	NM_001162426.1	715	cGg/cAg																																																																															
CCND1	595	MSKCC	GRCh37	11	69465899	69465899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042261-T15-IM7									Unknown	SOMATIC				MSK-IMPACT			486	48	644	0	ENST00000227507.2:c.737C>T	p.Ala246Val	p.A246V	ENST00000227507	NM_053056.2	246	gCc/gTc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0047218-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			600	105	638	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047218-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			308	251	759	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28896403	28896403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047218-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			369	157	484	0	ENST00000282397.4:c.3047G>A	p.Arg1016Lys	p.R1016K	ENST00000282397	NM_002019.4	1016	aGa/aAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047218-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			289	121	359	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3634857	3634857	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047218-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			555	501	640	0	ENST00000294008.3:c.4652A>G	p.Lys1551Arg	p.K1551R	ENST00000294008	NM_032444.2	1551	aAg/aGg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39570432	39570432	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs778354842		P-0047218-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			113	63	149	0	ENST00000262039.4:c.628C>T	p.Arg210Ter	p.R210*	ENST00000262039	NM_002647.2	210	Cga/Tga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602341	10602342	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0047218-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			609	63	948	0	ENST00000171111.5:c.1236_1237del	p.Arg413Ter	p.R413*	ENST00000171111	NM_203500.1	412	ccCCgt/ccgt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212576872	212576872	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047218-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			306	209	446	0	ENST00000342788.4:c.1027A>T	p.Met343Leu	p.M343L	ENST00000342788	NM_005235.2	343	Atg/Ttg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231351	98231351	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047218-T06-IM7									Unknown	SOMATIC				MSK-IMPACT			746	357	992	0	ENST00000331920.6:c.1932del	p.Tyr645ThrfsTer48	p.Y645Tfs*48	ENST00000331920	NM_000264.3	644	ccC/cc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057382-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			310	95	590	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111504	8111505	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0057382-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	72	546	0	ENST00000346208.3:c.992dup	p.Asn331LysfsTer21	p.N331Kfs*21	ENST00000346208		330	-/A																																																																															
RET	5979	MSKCC	GRCh37	10	43609021	43609021	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs878855059		P-0057382-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			365	47	816	0	ENST00000355710.3:c.1777G>A	p.Gly593Arg	p.G593R	ENST00000355710	NM_020975.4	593	Gga/Aga																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732517	74732517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057382-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			484	544	575	0	ENST00000359995.5:c.392G>A	p.Arg131Gln	p.R131Q	ENST00000359995	NM_001195427.1	131	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0064128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	183	694	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0064128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	205	896	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1220706	1220706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	8	738	0	ENST00000326873.7:c.724G>A	p.Gly242Arg	p.G242R	ENST00000326873	NM_000455.4	242	Ggg/Agg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0064128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	111	413	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
PGR	5241	MSKCC	GRCh37	11	100922165	100922165	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	16	319	0	ENST00000325455.5:c.2347A>G	p.Ile783Val	p.I783V	ENST00000325455	NM_001202474.3	783	Ata/Gta																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575141	48575141	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0064128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	62	531	0	ENST00000342988.3:c.335T>G	p.Val112Gly	p.V112G	ENST00000342988	NM_005359.5	112	gTt/gGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575161	48575161	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	12	440	0	ENST00000342988.3:c.355T>C	p.Phe119Leu	p.F119L	ENST00000342988	NM_005359.5	119	Ttt/Ctt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064226-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	65	734	1	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
KIT	3815	MSKCC	GRCh37	4	55593464	55593464	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs3822214		P-0064226-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	9	566	0	ENST00000288135.5:c.1621A>C	p.Met541Leu	p.M541L	ENST00000288135	NM_000222.2	541	Atg/Ctg																																																																															
MGA	23269	MSKCC	GRCh37	15	42041400	42041400	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064226-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	105	783	3	ENST00000219905.7:c.5595T>A	p.Asn1865Lys	p.N1865K	ENST00000219905	NM_001164273.1	1865	aaT/aaA																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71101750	71101751	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0064238-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	26	500	2	ENST00000318789.4:c.447dup	p.Gln150ThrfsTer20	p.Q150Tfs*20	ENST00000318789	NM_032682.5	149	-/A																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797263	135797271	+	inframe_deletion	In_Frame_Del	DEL	AAAGGAGAC	AAAGGAGAC	-			P-0064238-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	32	611	0	ENST00000298552.3:c.598_606del	p.Val200_Phe202del	p.V200_F202del	ENST00000298552	NM_001162426.1	200	GTCTCCTTT/-																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0064520-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			758	454	560	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0064520-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			683	181	739	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51507906	51507906	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0064520-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			332	19	325	0	ENST00000260433.2:c.852A>C	p.Leu284Phe	p.L284F	ENST00000260433		284	ttA/ttC																																																																															
VHL	7428	MSKCC	GRCh37	3	10183605	10183731	+	frameshift_variant	Frame_Shift_Del	DEL	CTGAAGAAGACGGCGGGGAGGAGTCGGGCGCCGAGGAGTCCGGCCCGGAAGAGTCCGGCCCGGAGGAACTGGGCGCCGAGGAGGAGATGGAGGCCGGGCGGCCGCGGCCCGTGCTGCGCTCGGTGAA	CTGAAGAAGACGGCGGGGAGGAGTCGGGCGCCGAGGAGTCCGGCCCGGAAGAGTCCGGCCCGGAGGAACTGGGCGCCGAGGAGGAGATGGAGGCCGGGCGGCCGCGGCCCGTGCTGCGCTCGGTGAA	-			P-0064520-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			873	25	891	0	ENST00000256474.2:c.76_202del	p.Glu26ArgfsTer91	p.E26Rfs*91	ENST00000256474	NM_000551.3	25	cCTGAAGAAGACGGCGGGGAGGAGTCGGGCGCCGAGGAGTCCGGCCCGGAAGAGTCCGGCCCGGAGGAACTGGGCGCCGAGGAGGAGATGGAGGCCGGGCGGCCGCGGCCCGTGCTGCGCTCGGTGAAc/cc																																																																															
MST1	4485	MSKCC	GRCh37	3	49722761	49722761	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs62262682		P-0064547-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			52	10	31	0	ENST00000449682.2:c.1478G>T	p.Arg493Leu	p.R493L	ENST00000449682	NM_020998.3	493	cGt/cTt																																																																															
ATM	472	MSKCC	GRCh37	11	108235935	108235935	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs770641163		P-0064547-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	210	585	0	ENST00000278616.4:c.8977C>T	p.Arg2993Ter	p.R2993*	ENST00000278616	NM_000051.3	2993	Cga/Tga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65305355	65305355	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064547-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			731	64	584	0	ENST00000342505.4:c.2773G>C	p.Glu925Gln	p.E925Q	ENST00000342505	NM_002227.2	925	Gaa/Caa																																																																															
ATM	472	MSKCC	GRCh37	11	108203532	108203532	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0064547-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	65	308	0	ENST00000278616.4:c.7832del	p.Ser2611IlefsTer20	p.S2611Ifs*20	ENST00000278616	NM_000051.3	2611	aGt/at																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143033711	143033711	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1364129144		P-0064547-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	67	338	0	ENST00000262992.4:c.2260C>A	p.Gln754Lys	p.Q754K	ENST00000262992	NM_001101669.1	754	Caa/Aaa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0064609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	23	715	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
NF2	4771	MSKCC	GRCh37	22	30032794	30032794	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121434259		P-0064609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			838	78	1023	1	ENST00000338641.4:c.169C>T	p.Arg57Ter	p.R57*	ENST00000338641	NM_000268.3	57	Cga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1207065	1207065	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0064609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1030	57	1180	0	ENST00000326873.7:c.157del	p.Asp53ThrfsTer11	p.D53Tfs*11	ENST00000326873	NM_000455.4	51	atG/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0064609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	21	534	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577524	7577524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064609-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			784	33	943	0	ENST00000269305.4:c.757A>T	p.Thr253Ser	p.T253S	ENST00000269305	NM_001126112.2	253	Acc/Tcc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972785	25972785	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200858310		P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	178	606	0	ENST00000435504.4:c.1640A>G	p.Gln547Arg	p.Q547R	ENST00000435504		547	cAg/cGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	107	444	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			915	175	720	5	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
RET	5979	MSKCC	GRCh37	10	43609990	43609990	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77711105		P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1024	245	830	1	ENST00000355710.3:c.1942G>A	p.Val648Ile	p.V648I	ENST00000355710	NM_020975.4	648	Gtc/Atc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557909	187557909	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs564430066		P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			921	234	708	0	ENST00000441802.2:c.3802C>T	p.Arg1268Trp	p.R1268W	ENST00000441802	NM_005245.3	1268	Cgg/Tgg																																																																															
AR	367	MSKCC	GRCh37	X	66931504	66931504	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1340026226		P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	206	300	0	ENST00000374690.3:c.2146G>A	p.Val716Met	p.V716M	ENST00000374690	NM_000044.3	716	Gtg/Atg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518262	8518262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	167	485	0	ENST00000356435.5:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000356435		377	Cgc/Tgc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216379	7216380	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1216832021		P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			935	219	757	0	ENST00000380728.2:c.868dup	p.Gln290ProfsTer?	p.Q290Pfs*?	ENST00000380728		290	cag/cCag																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652243	48652243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	217	330	0	ENST00000376670.3:c.914G>A	p.Arg305Gln	p.R305Q	ENST00000376670	NM_002049.3	305	cGa/cAa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41215947	41215947	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41293459		P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	98	346	0	ENST00000357654.3:c.5096G>A	p.Arg1699Gln	p.R1699Q	ENST00000357654	NM_007294.3	1699	cGg/cAg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36934823	36934823	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145256322		P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	139	556	0	ENST00000361632.4:c.1510G>A	p.Val504Met	p.V504M	ENST00000361632		504	Gtg/Atg																																																																															
EP300	2033	MSKCC	GRCh37	22	41572906	41572906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			840	229	751	0	ENST00000263253.7:c.5191C>T	p.Arg1731Cys	p.R1731C	ENST00000263253	NM_001429.3	1731	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151835975	151835975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			788	115	461	0	ENST00000262189.6:c.14549C>T	p.Ser4850Leu	p.S4850L	ENST00000262189	NM_170606.2	4850	tCg/tTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830884	72830885	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1043	245	874	0	ENST00000268489.5:c.5696dup	p.Glu1900ArgfsTer29	p.E1900Rfs*29	ENST00000268489	NM_006885.3	1899	gga/ggGa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21555724	21555724	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753361598		P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			796	207	656	1	ENST00000382592.4:c.2546G>A	p.Arg849Gln	p.R849Q	ENST00000382592	NM_014572.2	849	cGg/cAg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40462607	40462607	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1387284839		P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			894	218	714	0	ENST00000345506.4:c.2305C>T	p.Arg769Cys	p.R769C	ENST00000345506	NM_003152.3	769	Cgc/Tgc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905522	50905522	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1408031137		P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			849	248	904	0	ENST00000440232.2:c.650C>T	p.Pro217Leu	p.P217L	ENST00000440232	NM_002691.3	217	cCg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440489	49440489	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs910695111		P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			819	261	677	0	ENST00000301067.7:c.4321C>T	p.Arg1441Cys	p.R1441C	ENST00000301067	NM_003482.3	1441	Cgc/Tgc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123176491	123176491	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	64	109	0	ENST00000218089.9:c.458A>T	p.Asp153Val	p.D153V	ENST00000218089	NM_001042749.1	153	gAt/gTt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47685237	47685237	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	67	270	0	ENST00000347630.2:c.713del	p.Lys238ArgfsTer17	p.K238Rfs*17	ENST00000347630	NM_001007230.1	238	aAg/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	51	206	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
NF1	4763	MSKCC	GRCh37	17	29588751	29588751	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs760703505		P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	115	373	0	ENST00000358273.4:c.4600C>T	p.Arg1534Ter	p.R1534*	ENST00000358273	NM_001042492.2	1534	Cga/Tga																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363231	40363231	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768216635		P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			965	87	645	0	ENST00000397332.2:c.998C>T	p.Ala333Val	p.A333V	ENST00000397332	NM_001033082.2	333	gCg/gTg																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166620	118166620	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			705	206	585	0	ENST00000369448.3:c.1130C>A	p.Pro377Gln	p.P377Q	ENST00000369448	NM_017709.3	377	cCa/cAa																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112891153	112891153	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730880992		P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			744	174	566	0	ENST00000351677.2:c.487G>A	p.Gly163Ser	p.G163S	ENST00000351677	NM_002834.3	163	Ggc/Agc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117740	115117740	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	175	423	0	ENST00000257566.3:c.695G>C	p.Gly232Ala	p.G232A	ENST00000257566	NM_016569.3	232	gGg/gCg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563170	21563170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			857	253	888	1	ENST00000382592.4:c.749G>A	p.Gly250Asp	p.G250D	ENST00000382592	NM_014572.2	250	gGc/gAc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467821	99467821	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			986	65	628	0	ENST00000268035.6:c.2690A>G	p.Asn897Ser	p.N897S	ENST00000268035	NM_000875.3	897	aAc/aGc																																																																															
CDH1	999	MSKCC	GRCh37	16	68862158	68862158	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs530717933		P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			789	220	654	0	ENST00000261769.5:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000261769	NM_004360.3	749	cGg/cAg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216418	7216419	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1042	221	771	0	ENST00000380728.2:c.829dup	p.Gln277ProfsTer?	p.Q277Pfs*?	ENST00000380728		277	cag/cCag																																																																															
NF1	4763	MSKCC	GRCh37	17	29541502	29541502	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	18	97	0	ENST00000358273.4:c.1428del	p.Lys476AsnfsTer22	p.K476Nfs*22	ENST00000358273	NM_001042492.2	476	Aaa/aa																																																																															
NF1	4763	MSKCC	GRCh37	17	29556373	29556373	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765848298		P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	129	510	0	ENST00000358273.4:c.2740C>T	p.Arg914Trp	p.R914W	ENST00000358273	NM_001042492.2	914	Cgg/Tgg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619223	37619223	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			934	271	707	0	ENST00000447079.4:c.899G>T	p.Arg300Ile	p.R300I	ENST00000447079	NM_015083.1	300	aGa/aTa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687307	37687307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			848	218	746	1	ENST00000447079.4:c.4211G>A	p.Arg1404His	p.R1404H	ENST00000447079	NM_015083.1	1404	cGt/cAt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56367784	56367784	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	109	339	0	ENST00000348428.3:c.610T>A	p.Ser204Thr	p.S204T	ENST00000348428	NM_006785.3	204	Tca/Aca																																																																															
CARM1	10498	MSKCC	GRCh37	19	11032414	11032414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			833	201	719	0	ENST00000327064.4:c.1808C>T	p.Thr603Ile	p.T603I	ENST00000327064	NM_199141.1	603	aCc/aTc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027214	48027214	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	154	504	1	ENST00000234420.5:c.2092C>T	p.Gln698Ter	p.Q698*	ENST00000234420	NM_000179.2	698	Cag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40757431	40757431	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	211	634	0	ENST00000373198.4:c.2867A>C	p.Asp956Ala	p.D956A	ENST00000373198	NM_133170.3	956	gAc/gCc																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445929	29445929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	198	622	0	ENST00000544604.2:c.1760G>A	p.Arg587His	p.R587H	ENST00000544604	NM_001206998.1	587	cGc/cAc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626078	12626078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			849	174	681	0	ENST00000251849.4:c.1882G>A	p.Ala628Thr	p.A628T	ENST00000251849	NM_002880.3	628	Gca/Aca																																																																															
MSH3	4437	MSKCC	GRCh37	5	79965925	79965926	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	84	357	0	ENST00000265081.6:c.594dup	p.Asp199Ter	p.D199*	ENST00000265081	NM_002439.4	197	ctt/cTtt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524400	176524400	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			849	78	682	0	ENST00000292408.4:c.2259+2T>C		p.X753_splice	ENST00000292408	NM_213647.1	753																																																																																
HIST1H3A	8350	MSKCC	GRCh37	6	26020740	26020740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			867	208	664	0	ENST00000357647.3:c.23C>T	p.Ala8Val	p.A8V	ENST00000357647	NM_003529.2	8	gCt/gTt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100063	157100063	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1056	67	887	0	ENST00000346085.5:c.1000G>T	p.Ala334Ser	p.A334S	ENST00000346085	NM_020732.3	334	Gca/Tca																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38273524	38273524	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			995	89	672	0	ENST00000425967.3:c.1811T>C	p.Leu604Pro	p.L604P	ENST00000425967	NM_001174067.1	604	cTg/cCg																																																																															
TCEB1	6921	MSKCC	GRCh37	8	74858923	74858923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	149	335	0	ENST00000518127.1:c.281C>T	p.Pro94Leu	p.P94L	ENST00000518127	NM_001204857.1	94	cCa/cTa																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2039765	2039767	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			964	98	769	1	ENST00000349721.2:c.663_665del	p.Gln238del	p.Q238del	ENST00000349721	NM_003070.3	219	CAG/-																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2086920	2086920	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			851	165	613	0	ENST00000349721.2:c.2622del	p.Arg875GlufsTer5	p.R875Efs*5	ENST00000349721	NM_003070.3	873	gCc/gc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069021	5069021	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	40	188	0	ENST00000381652.3:c.1327-1G>A		p.X443_splice	ENST00000381652	NM_004972.3	443																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8485794	8485794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	149	467	0	ENST00000356435.5:c.3023G>A	p.Ser1008Asn	p.S1008N	ENST00000356435		1008	aGt/aAt																																																																															
BTK	695	MSKCC	GRCh37	X	100609654	100609654	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	153	244	0	ENST00000308731.7:c.1595A>G	p.Gln532Arg	p.Q532R	ENST00000308731	NM_000061.2	532	cAa/cGa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777792	3777792	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200566758		P-0064629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	306	831	0	ENST00000262367.5:c.7256C>T	p.Ala2419Val	p.A2419V	ENST00000262367	NM_004380.2	2419	gCg/gTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0064629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			739	256	642	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619279	37619280	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0064629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	299	759	0	ENST00000447079.4:c.956dup	p.Tyr319Ter	p.Y319*	ENST00000447079	NM_015083.1	319	tac/tAac																																																																															
CDK12	51755	MSKCC	GRCh37	17	37672008	37672008	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0064629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	167	343	0	ENST00000447079.4:c.2795del	p.Lys932ArgfsTer14	p.K932Rfs*14	ENST00000447079	NM_015083.1	931	acA/ac																																																																															
MYC	4609	MSKCC	GRCh37	8	128752713	128752724	+	inframe_deletion	In_Frame_Del	DEL	TCAGAGTCTGGA	TCAGAGTCTGGA	-			P-0064629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1030	703	668	0	ENST00000377970.2:c.877_888del	p.Glu293_Ser296del	p.E293_S296del	ENST00000377970	NM_002467.4	292	TCAGAGTCTGGA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0064630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			754	20	642	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254929	16254929	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	530	609	0	ENST00000375759.3:c.2194C>T	p.Arg732Ter	p.R732*	ENST00000375759	NM_015001.2	732	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913384		P-0064630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	518	656	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs587782082		P-0064630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	398	494	0	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098806	178098806	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	463	528	0	ENST00000397062.3:c.239C>A	p.Thr80Lys	p.T80K	ENST00000397062	NM_006164.4	80	aCa/aAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831127	72831130	+	frameshift_variant	Frame_Shift_Del	DEL	GGTC	GGTC	-			P-0064630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	510	585	0	ENST00000268489.5:c.5451_5454del	p.Thr1818ValfsTer4	p.T1818Vfs*4	ENST00000268489	NM_006885.3	1817	gtGACC/gt																																																																															
NF1	4763	MSKCC	GRCh37	17	29508503	29508503	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	178	236	0	ENST00000358273.4:c.650A>G	p.Glu217Gly	p.E217G	ENST00000358273	NM_001042492.2	217	gAa/gGa																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30302625	30302625	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	22	56	0	ENST00000322652.5:c.716C>G	p.Pro239Arg	p.P239R	ENST00000322652	NM_015355.2	239	cCt/cGt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298695	15298695	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	431	603	0	ENST00000263388.2:c.1603G>T	p.Glu535Ter	p.E535*	ENST00000263388	NM_000435.2	535	Gag/Tag																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424114	47424138	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCAGTGTGTCTTTCTCGACCCTG	CTTCAGTGTGTCTTTCTCGACCCTG	-			P-0064630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	477	524	0	ENST00000404338.3:c.2186_2210del	p.Gln729LeufsTer19	p.Q729Lfs*19	ENST00000404338	NM_004491.4	728	CTTCAGTGTGTCTTTCTCGACCCTGct/ct																																																																															
ALK	238	MSKCC	GRCh37	2	29451929	29451929	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	295	519	0	ENST00000389048.3:c.2636G>T	p.Gly879Val	p.G879V	ENST00000389048	NM_004304.4	879	gGt/gTt																																																																															
ATR	545	MSKCC	GRCh37	3	142285067	142285067	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	300	373	0	ENST00000350721.4:c.188C>G	p.Pro63Arg	p.P63R	ENST00000350721	NM_001184.3	63	cCa/cGa																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287616	33287616	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	199	572	2	ENST00000374542.5:c.1481A>G	p.Lys494Arg	p.K494R	ENST00000374542	NM_001141970.1	494	aAg/aGg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873441	151873441	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	147	574	0	ENST00000262189.6:c.9097A>G	p.Ile3033Val	p.I3033V	ENST00000262189	NM_170606.2	3033	Att/Gtt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265578	152265578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	214	622	0	ENST00000206249.3:c.1031G>A	p.Gly344Asp	p.G344D	ENST00000206249	NM_000125.3	344	gGc/gAc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716208	52716208	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0064632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	172	718	0	ENST00000322088.6:c.652G>A	p.Asp218Asn	p.D218N	ENST00000322088	NM_014225.5	218	Gac/Aac																																																																															
MSH2	4436	MSKCC	GRCh37	2	47657010	47657029	+	frameshift_variant	Frame_Shift_Del	DEL	AGATTGTTACCGACTCTATC	AGATTGTTACCGACTCTATC	-			P-0064632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	47	346	0	ENST00000233146.2:c.1208_1227del	p.Asp403GlyfsTer7	p.D403Gfs*7	ENST00000233146	NM_000251.2	402	caAGATTGTTACCGACTCTATCag/caag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681615	30681615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	420	627	1	ENST00000376406.3:c.482G>A	p.Arg161Lys	p.R161K	ENST00000376406	NM_014641.2	161	aGg/aAg																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0064651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	29	413	0	ENST00000397752.3:c.3028+1G>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
INPP4B	8821	MSKCC	GRCh37	4	143029285	143029285	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	13	179	0	ENST00000262992.4:c.2335G>T	p.Glu779Ter	p.E779*	ENST00000262992	NM_001101669.1	779	Gaa/Taa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519971		P-0064653-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	269	243	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653805	89653805	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs876659443		P-0064658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			28	51	64	0	ENST00000371953.3:c.103A>G	p.Met35Val	p.M35V	ENST00000371953	NM_000314.4	35	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0064658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	1050	796	1	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61310406	61310406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	74	107	0	ENST00000341074.5:c.211G>T	p.Ala71Ser	p.A71S	ENST00000341074	NM_002974.2	71	Gca/Tca																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508473	106508473	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1370328855		P-0064658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	288	538	0	ENST00000359195.3:c.467C>T	p.Ala156Val	p.A156V	ENST00000359195	NM_002649.2	156	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0064672-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	32	612	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0064679-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	54	729	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064679-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	16	358	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435239	18435239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064679-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	43	622	0	ENST00000266497.5:c.224G>A	p.Gly75Glu	p.G75E	ENST00000266497		75	gGg/gAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121909224		P-0064728-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	33	420	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0064728-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	70	845	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99440093	99440093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064728-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	43	478	0	ENST00000268035.6:c.1061C>T	p.Thr354Ile	p.T354I	ENST00000268035	NM_000875.3	354	aCc/aTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100149	27100150	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0064728-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	67	957	0	ENST00000324856.7:c.3946dup	p.Ser1316PhefsTer7	p.S1316Ffs*7	ENST00000324856	NM_006015.4	1315	-/T																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs587782082		P-0064759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	13	342	0	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0064759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	15	253	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0064760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	122	436	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11552822		P-0064761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	81	419	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0064761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	97	355	1	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31401618	31401618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	36	303	0	ENST00000344624.3:c.4046G>A	p.Arg1349Lys	p.R1349K	ENST00000344624		1349	aGa/aAa																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40364003	40364003	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0064761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	77	326	0	ENST00000293328.3:c.1679G>C	p.Arg560Thr	p.R560T	ENST00000293328	NM_012448.3	560	aGg/aCg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602803	10602803	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	236	475	0	ENST00000171111.5:c.775C>T	p.Gln259Ter	p.Q259*	ENST00000171111	NM_203500.1	259	Cag/Tag																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47423001	47423001	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0064761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	229	397	0	ENST00000404338.3:c.1069G>T	p.Glu357Ter	p.E357*	ENST00000404338	NM_004491.4	357	Gaa/Taa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426682	212426682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	88	400	0	ENST00000342788.4:c.2433C>A	p.His811Gln	p.H811Q	ENST00000342788	NM_005235.2	811	caC/caA																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371690	225371691	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0064761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	45	366	0	ENST00000264414.4:c.913_914del	p.Arg305CysfsTer10	p.R305Cfs*10	ENST00000264414	NM_003590.4	305	CGt/t																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31386315	31386315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	38	483	0	ENST00000328111.2:c.1540G>T	p.Ala514Ser	p.A514S	ENST00000328111	NM_006892.3	514	Gcc/Tcc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47155417	47155417	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0064761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	76	324	0	ENST00000409792.3:c.4664T>G	p.Ile1555Arg	p.I1555R	ENST00000409792	NM_014159.6	1555	aTa/aGa																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045710	26045710	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	234	438	0	ENST00000540144.1:c.72A>T	p.Lys24Asn	p.K24N	ENST00000540144	NM_003531.2	24	aaA/aaT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508220	106508220	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	226	429	0	ENST00000359195.3:c.214G>C	p.Ala72Pro	p.A72P	ENST00000359195	NM_002649.2	72	Gcc/Ccc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086008	16086008	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	180	224	0	ENST00000281043.3:c.1184A>T	p.Asn395Ile	p.N395I	ENST00000281043	NM_005378.4	395	aAc/aTc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212576854	212576854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	104	316	0	ENST00000342788.4:c.1045G>T	p.Asp349Tyr	p.D349Y	ENST00000342788	NM_005235.2	349	Gat/Tat																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170249	32170249	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	107	244	0	ENST00000375023.3:c.3359A>C	p.Tyr1120Ser	p.Y1120S	ENST00000375023	NM_004557.3	1120	tAt/tCt																																																																															
TET1	80312	MSKCC	GRCh37	10	70333254	70333254	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	77	372	0	ENST00000373644.4:c.1159G>C	p.Glu387Gln	p.E387Q	ENST00000373644	NM_030625.2	387	Gag/Cag																																																																															
POLE	5426	MSKCC	GRCh37	12	133212555	133212555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	274	326	0	ENST00000320574.5:c.5734G>A	p.Glu1912Lys	p.E1912K	ENST00000320574	NM_006231.2	1912	Gaa/Aaa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467868	99467868	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	239	327	0	ENST00000268035.6:c.2737A>T	p.Asn913Tyr	p.N913Y	ENST00000268035	NM_000875.3	913	Aat/Tat																																																																															
CDH1	999	MSKCC	GRCh37	16	68867265	68867265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121964872		P-0009202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	168	286	0	ENST00000261769.5:c.2512A>G	p.Ser838Gly	p.S838G	ENST00000261769	NM_004360.3	838	Agc/Ggc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81819671	81819671	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	338	488	0	ENST00000359376.3:c.77C>A	p.Thr26Lys	p.T26K	ENST00000359376	NM_002661.3	26	aCg/aAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346165	89346165	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	97	218	1	ENST00000301030.4:c.6785G>C	p.Gly2262Ala	p.G2262A	ENST00000301030	NM_001256183.1	2262	gGc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0009202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	319	417	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902142	50902142	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772197667		P-0009202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	105	475	0	ENST00000440232.2:c.34G>A	p.Gly12Arg	p.G12R	ENST00000440232	NM_002691.3	12	Ggg/Agg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417493	139417493	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	252	372	0	ENST00000277541.6:c.551del	p.Gln184ArgfsTer93	p.Q184Rfs*93	ENST00000277541	NM_017617.3	184	cAg/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730882026		P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	171	778	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482537	56482537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	50	711	0	ENST00000267101.3:c.994G>A	p.Glu332Lys	p.E332K	ENST00000267101	NM_001982.3	332	Gag/Aag																																																																															
STK11	6794	MSKCC	GRCh37	19	1220432	1220432	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	170	1041	0	ENST00000326873.7:c.526del	p.Asp176ThrfsTer111	p.D176Tfs*111	ENST00000326873	NM_000455.4	175	aaG/aa																																																																															
MPL	4352	MSKCC	GRCh37	1	43804977	43804977	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	107	598	0	ENST00000372470.3:c.427G>T	p.Gly143Cys	p.G143C	ENST00000372470	NM_005373.2	143	Ggt/Tgt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156841473	156841473	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	190	879	0	ENST00000524377.1:c.776A>G	p.Asn259Ser	p.N259S	ENST00000524377	NM_002529.3	259	aAc/aGc																																																																															
ATM	472	MSKCC	GRCh37	11	108165673	108165673	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	30	595	0	ENST00000278616.4:c.4796C>A	p.Ser1599Ter	p.S1599*	ENST00000278616	NM_000051.3	1599	tCa/tAa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432191	121432191	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	105	789	0	ENST00000257555.6:c.938C>A	p.Ser313Tyr	p.S313Y	ENST00000257555		313	tCc/tAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912420	32912420	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	25	747	0	ENST00000380152.3:c.3928A>C	p.Thr1310Pro	p.T1310P	ENST00000380152		1310	Act/Cct																																																																															
CD276	80381	MSKCC	GRCh37	15	74000680	74000680	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	70	806	2	ENST00000318443.5:c.1370G>T	p.Gly457Val	p.G457V	ENST00000318443	NM_001024736.1	457	gGg/gTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678573	88678573	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs746542638		P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	74	426	0	ENST00000360948.2:c.963C>G	p.Ile321Met	p.I321M	ENST00000360948	NM_001012338.2	321	atC/atG																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631908	90631908	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777305434		P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	141	1008	4	ENST00000330062.3:c.445C>T	p.Arg149Trp	p.R149W	ENST00000330062	NM_002168.2	149	Cgg/Tgg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225512	2225512	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	77	966	0	ENST00000326181.6:c.1515C>G	p.Ile505Met	p.I505M	ENST00000326181	NM_032271.2	505	atC/atG																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2636680	2636776	+	frameshift_variant	Frame_Shift_Del	DEL	GACAATCTCCTGAGCCAGTTTGGCTGCATGCAGGTGTCTTCGTCCTCCTCCTCACACTCCCTGTCAGCCTCCGACACGGGCCTGCCCCAGAGGTCAG	GACAATCTCCTGAGCCAGTTTGGCTGCATGCAGGTGTCTTCGTCCTCCTCCTCACACTCCCTGTCAGCCTCCGACACGGGCCTGCCCCAGAGGTCAG	-			P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	54	620	0	ENST00000342085.4:c.1130_1226del	p.Asp377AlafsTer4	p.D377Afs*4	ENST00000342085	NM_002613.4	377	GACAATCTCCTGAGCCAGTTTGGCTGCATGCAGGTGTCTTCGTCCTCCTCCTCACACTCCCTGTCAGCCTCCGACACGGGCCTGCCCCAGAGGTCAGgc/gc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647990	3647990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	117	1149	2	ENST00000294008.3:c.1174C>T	p.His392Tyr	p.H392Y	ENST00000294008	NM_032444.2	392	Cac/Tac																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30128507	30128507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1458119852		P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	158	871	0	ENST00000263025.4:c.875G>A	p.Trp292Ter	p.W292*	ENST00000263025	NM_002746.2	292	tGg/tAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11136097	11136097	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	140	949	3	ENST00000344626.4:c.3082-1G>T		p.X1028_splice	ENST00000344626	NM_003072.3	1028																																																																																
DNMT3A	1788	MSKCC	GRCh37	2	25467043	25467043	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	183	928	0	ENST00000264709.3:c.1832A>G	p.Asn611Ser	p.N611S	ENST00000264709	NM_175629.2	611	aAt/aGt																																																																															
ALK	238	MSKCC	GRCh37	2	29416535	29416535	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1174344092		P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	174	819	2	ENST00000389048.3:c.4418G>A	p.Gly1473Glu	p.G1473E	ENST00000389048	NM_004304.4	1473	gGg/gAg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212615376	212615376	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	54	763	0	ENST00000342788.4:c.610C>G	p.His204Asp	p.H204D	ENST00000342788	NM_005235.2	204	Cat/Gat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125764	47125764	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	48	561	0	ENST00000409792.3:c.5506C>G	p.Pro1836Ala	p.P1836A	ENST00000409792	NM_014159.6	1836	Ccg/Gcg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138400881	138400881	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	50	976	0	ENST00000289153.2:c.2432G>T	p.Arg811Leu	p.R811L	ENST00000289153	NM_006219.2	811	cGa/cTa																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374772	149374772	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	48	456	1	ENST00000360632.3:c.322C>T	p.Gln108Ter	p.Q108*	ENST00000360632	NM_015472.4	108	Cag/Tag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55138614	55138614	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	63	810	0	ENST00000257290.5:c.1291C>A	p.Gln431Lys	p.Q431K	ENST00000257290	NM_006206.4	431	Cag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629388	187629388	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778980929		P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	45	1022	0	ENST00000441802.2:c.1594C>T	p.Arg532Trp	p.R532W	ENST00000441802	NM_005245.3	532	Cgg/Tgg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149499065	149499065	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	135	891	4	ENST00000261799.4:c.2763C>A	p.Tyr921Ter	p.Y921*	ENST00000261799	NM_002609.3	921	taC/taA																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520283	176520283	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760787865		P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	135	733	0	ENST00000292408.4:c.1202G>A	p.Arg401His	p.R401H	ENST00000292408	NM_213647.1	401	cGc/cAc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30676006	30676006	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs142090899		P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	149	844	1	ENST00000376406.3:c.2350G>T	p.Ala784Ser	p.A784S	ENST00000376406	NM_014641.2	784	Gca/Tca																																																																															
HGF	3082	MSKCC	GRCh37	7	81392035	81392035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	38	560	1	ENST00000222390.5:c.242C>A	p.Pro81Gln	p.P81Q	ENST00000222390	NM_000601.4	81	cCa/cAa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513335	106513335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	178	722	0	ENST00000359195.3:c.2239C>T	p.Leu747Phe	p.L747F	ENST00000359195	NM_002649.2	747	Ctt/Ttt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222334	53222334	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	96	1144	0	ENST00000375401.3:c.4498G>T	p.Glu1500Ter	p.E1500*	ENST00000375401	NM_004187.3	1500	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519930		P-0020140-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			455	50	588	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121082	11121082	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020140-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	130	892	0	ENST00000344626.4:c.2149G>T	p.Glu717Ter	p.E717*	ENST00000344626	NM_003072.3	717	Gaa/Taa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95563013	95563013	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020140-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	44	496	0	ENST00000343455.3:c.4244A>C	p.Glu1415Ala	p.E1415A	ENST00000343455	NM_177438.2	1415	gAg/gCg																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023273	33023273	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020140-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			560	73	859	0	ENST00000300177.4:c.382C>A	p.Pro128Thr	p.P128T	ENST00000300177	NM_001191322.1	128	Ccc/Acc																																																																															
NF1	4763	MSKCC	GRCh37	17	29652836	29652836	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0020140-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			219	27	293	0	ENST00000358273.4:c.4836-2A>T		p.X1612_splice	ENST00000358273	NM_001042492.2	1612																																																																																
NF1	4763	MSKCC	GRCh37	17	29653082	29653082	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020140-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			359	36	554	0	ENST00000358273.4:c.5080G>T	p.Glu1694Ter	p.E1694*	ENST00000358273	NM_001042492.2	1694	Gag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1219357	1219370	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGAAATGCTGGA	CAGGAAATGCTGGA	-			P-0020140-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			351	79	786	0	ENST00000326873.7:c.412_425del	p.Glu138ArgfsTer20	p.E138Rfs*20	ENST00000326873	NM_000455.4	137	CAGGAAATGCTGGAc/c																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2206769	2206775	+	frameshift_variant	Frame_Shift_Del	DEL	TTCAGAA	TTCAGAA	-			P-0020140-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	110	783	0	ENST00000398665.3:c.830_836del	p.Phe277Ter	p.F277*	ENST00000398665	NM_032482.2	277	TTCAGAAta/ta																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250496	10250496	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A	rs772176328		P-0020140-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	90	617	1	ENST00000340748.4:c.3759-3C>T		p.X1253_splice	ENST00000340748		1253																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10599909	10599909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020140-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	123	765	3	ENST00000171111.5:c.1667C>T	p.Ala556Val	p.A556V	ENST00000171111	NM_203500.1	556	gCc/gTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790176	40790176	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020140-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			280	33	498	0	ENST00000373198.4:c.2555G>T	p.Gly852Val	p.G852V	ENST00000373198	NM_133170.3	852	gGc/gTc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9776671	9776671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	209	663	0	ENST00000377346.4:c.774G>T	p.Gln258His	p.Q258H	ENST00000377346	NM_005026.3	258	caG/caT																																																																															
FH	2271	MSKCC	GRCh37	1	241661258	241661258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	88	594	0	ENST00000366560.3:c.1403C>T	p.Ala468Val	p.A468V	ENST00000366560	NM_000143.3	468	gCa/gTa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710987	114710987	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	155	467	1	ENST00000543371.1:c.211C>G	p.Arg71Gly	p.R71G	ENST00000543371	NM_001198531.1	71	Cgc/Ggc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94918436	94918436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	111	567	0	ENST00000536441.1:c.746C>T	p.Ser249Leu	p.S249L	ENST00000536441	NM_144665.3	249	tCa/tTa																																																																															
RB1	5925	MSKCC	GRCh37	13	48878187	48878187	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	121	198	0	ENST00000267163.4:c.137+2T>G		p.X46_splice	ENST00000267163	NM_000321.2	46																																																																																
FANCA	2175	MSKCC	GRCh37	16	89831437	89831437	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	116	675	0	ENST00000389301.3:c.2639G>C	p.Arg880Pro	p.R880P	ENST00000389301	NM_000135.2	880	cGa/cCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	279	715	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
NCOR1	9611	MSKCC	GRCh37	17	16046984	16046984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	77	531	1	ENST00000268712.3:c.1109C>T	p.Ser370Leu	p.S370L	ENST00000268712	NM_006311.3	370	tCa/tTa																																																																															
YES1	7525	MSKCC	GRCh37	18	732954	732954	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	211	551	2	ENST00000314574.4:c.1303C>A	p.Pro435Thr	p.P435T	ENST00000314574	NM_005433.3	435	Cca/Aca																																																																															
STK11	6794	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs137853076		P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	550	869	1	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag																																																																															
AXL	558	MSKCC	GRCh37	19	41748800	41748800	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	142	796	0	ENST00000301178.4:c.1325C>G	p.Ser442Ter	p.S442*	ENST00000301178	NM_021913.4	442	tCa/tGa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50917077	50917077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	188	924	0	ENST00000440232.2:c.2329G>A	p.Glu777Lys	p.E777K	ENST00000440232	NM_002691.3	777	Gag/Aag																																																																															
XPO1	7514	MSKCC	GRCh37	2	61717860	61717860	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs754930781		P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	167	724	0	ENST00000401558.2:c.1939C>G	p.Gln647Glu	p.Q647E	ENST00000401558	NM_003400.3	647	Caa/Gaa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99160468	99160468	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	73	432	0	ENST00000074304.5:c.947G>A	p.Arg316Lys	p.R316K	ENST00000074304	NM_001134224.1	316	aGa/aAa																																																																															
INHA	3623	MSKCC	GRCh37	2	220439984	220439984	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	404	952	0	ENST00000243786.2:c.837G>T	p.Trp279Cys	p.W279C	ENST00000243786	NM_002191.3	279	tgG/tgT																																																																															
TOP1	7150	MSKCC	GRCh37	20	39729966	39729966	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	97	556	0	ENST00000361337.2:c.1281C>G	p.Ile427Met	p.I427M	ENST00000361337	NM_003286.2	427	atC/atG																																																																															
TOP1	7150	MSKCC	GRCh37	20	39729983	39729983	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	89	466	0	ENST00000361337.2:c.1298C>A	p.Ser433Ter	p.S433*	ENST00000361337	NM_003286.2	433	tCa/tAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743858	40743858	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs374930365		P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	218	611	0	ENST00000373198.4:c.3137G>C	p.Arg1046Pro	p.R1046P	ENST00000373198	NM_133170.3	1046	cGc/cCc																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961352	54961352	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	243	571	0	ENST00000312783.6:c.280A>G	p.Asn94Asp	p.N94D	ENST00000312783	NM_198436.1	94	Aac/Gac																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52677333	52677333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	125	569	1	ENST00000394830.3:c.926G>T	p.Arg309Ile	p.R309I	ENST00000394830	NM_018313.4	309	aGa/aTa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189912	66189912	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	57	379	0	ENST00000273854.3:c.3034C>A	p.Leu1012Ile	p.L1012I	ENST00000273854	NM_004439.5	1012	Ctt/Att																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	183	314	0				ENST00000310581	NM_198253.2																																																																																	
CSF1R	1436	MSKCC	GRCh37	5	149456977	149456977	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	196	496	0	ENST00000286301.3:c.751G>C	p.Asp251His	p.D251H	ENST00000286301	NM_005211.3	251	Gac/Cac																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165243	32165243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	147	736	0	ENST00000375023.3:c.4885C>T	p.His1629Tyr	p.H1629Y	ENST00000375023	NM_004557.3	1629	Cac/Tac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2983885	2983885	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	187	823	0	ENST00000396946.4:c.645G>C	p.Lys215Asn	p.K215N	ENST00000396946	NM_032415.4	215	aaG/aaC																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450366	50450366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	234	571	1	ENST00000331340.3:c.550C>T	p.Arg184Trp	p.R184W	ENST00000331340	NM_006060.4	184	Cgg/Tgg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197767	123197767	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	133	628	2	ENST00000218089.9:c.1891G>T	p.Ala631Ser	p.A631S	ENST00000218089	NM_001042749.1	631	Gca/Tca																																																																															
NUP93	9688	MSKCC	GRCh37	16	56864456	56864456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	145	619	0	ENST00000308159.5:c.944G>T	p.Gly315Val	p.G315V	ENST00000308159	NM_014669.4	315	gGc/gTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224714	36224714	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768250201		P-0022001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	222	932	1	ENST00000222270.7:c.7100C>T	p.Pro2367Leu	p.P2367L	ENST00000222270	NM_014727.1	2367	cCc/cTc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894842	101894842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	79	464	0	ENST00000374994.4:c.395G>A	p.Gly132Glu	p.G132E	ENST00000374994	NM_004612.2	132	gGa/gAa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	307	536	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462123	120462123	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	376	555	1	ENST00000256646.2:c.5593C>T	p.Gln1865Ter	p.Q1865*	ENST00000256646	NM_024408.3	1865	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	730	553	2	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038529	47038529	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	477	342	0	ENST00000329236.7:c.460G>T	p.Glu154Ter	p.E154*	ENST00000329236	NM_001204466.1	154	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	882	660	0	ENST00000269305.4:c.880del	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	294	Gag/ag																																																																															
FLT3	2322	MSKCC	GRCh37	13	28610085	28610085	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	153	462	0	ENST00000241453.7:c.1405G>T	p.Asp469Tyr	p.D469Y	ENST00000241453	NM_004119.2	469	Gac/Tac																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66774216	66774216	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1473690179		P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	380	662	1	ENST00000307102.5:c.692C>T	p.Ser231Leu	p.S231L	ENST00000307102	NM_002755.3	231	tCg/tTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81399260	81399260	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1390087672		P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	610	545	0	ENST00000222390.5:c.28C>A	p.Leu10Met	p.L10M	ENST00000222390	NM_000601.4	10	Ctg/Atg																																																																															
ATRX	546	MSKCC	GRCh37	X	76940083	76940083	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	208	223	0	ENST00000373344.5:c.665G>T	p.Trp222Leu	p.W222L	ENST00000373344	NM_000489.3	222	tGg/tTg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201980335	201980335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	262	678	0	ENST00000359651.3:c.71C>A	p.Ser24Tyr	p.S24Y	ENST00000359651		24	tCc/tAc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631170	69631170	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	576	605	0	ENST00000334134.2:c.242T>A	p.Val81Glu	p.V81E	ENST00000334134	NM_005247.2	81	gTg/gAg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999179	100999179	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	790	653	4	ENST00000325455.5:c.623C>A	p.Ala208Asp	p.A208D	ENST00000325455	NM_001202474.3	208	gCc/gAc																																																																															
ATM	472	MSKCC	GRCh37	11	108137947	108137947	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	205	402	0	ENST00000278616.4:c.2516A>T	p.Glu839Val	p.E839V	ENST00000278616	NM_000051.3	839	gAa/gTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29509684	29509684	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	202	442	0	ENST00000358273.4:c.888+1G>A		p.X296_splice	ENST00000358273	NM_001042492.2	296																																																																																
SF3B1	23451	MSKCC	GRCh37	2	198257165	198257166	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	164	355	0	ENST00000335508.6:c.3776_3777delinsTT	p.Arg1259Leu	p.R1259L	ENST00000335508	NM_012433.2	1259	cGG/cTT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40757450	40757450	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	409	602	0	ENST00000373198.4:c.2848C>G	p.Leu950Val	p.L950V	ENST00000373198	NM_133170.3	950	Ctg/Gtg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866424	42866424	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	587	818	0	ENST00000398585.3:c.208G>T	p.Val70Phe	p.V70F	ENST00000398585	NM_001135099.1	70	Gtc/Ttc																																																																															
EP300	2033	MSKCC	GRCh37	22	41523507	41523507	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	153	335	0	ENST00000263253.7:c.923C>A	p.Pro308Gln	p.P308Q	ENST00000263253	NM_001429.3	308	cCg/cAg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750464	41750464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	418	499	0	ENST00000226382.2:c.164C>T	p.Ser55Phe	p.S55F	ENST00000226382	NM_003924.3	55	tCc/tTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1271240	1271240	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	100	253	0	ENST00000310581.5:c.2462G>T	p.Arg821Met	p.R821M	ENST00000310581	NM_198253.2	821	aGg/aTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588928	67588928	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	85	242	0	ENST00000274335.5:c.1020-1G>T		p.X340_splice	ENST00000274335		340																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176520524	176520524	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763461529		P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	375	792	0	ENST00000292408.4:c.1369G>A	p.Asp457Asn	p.D457N	ENST00000292408	NM_213647.1	457	Gac/Aac																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188563	32188563	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	555	656	0	ENST00000375023.3:c.892T>A	p.Tyr298Asn	p.Y298N	ENST00000375023	NM_004557.3	298	Tac/Aac																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43748574	43748574	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	367	347	0	ENST00000523873.1:c.528G>T	p.Trp176Cys	p.W176C	ENST00000523873		176	tgG/tgT																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965349	68965350	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	385	525	1	ENST00000288368.4:c.961_962delinsTT	p.Gly321Leu	p.G321L	ENST00000288368	NM_024870.2	321	GGa/TTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528761	8528761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	184	310	0	ENST00000356435.5:c.371G>T	p.Gly124Val	p.G124V	ENST00000356435		124	gGc/gTc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965349	68965349	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	385	525	1	ENST00000288368.4:c.961G>T	p.Gly321Ter	p.G321*	ENST00000288368	NM_024870.2	321	Gga/Tga																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098800	178098800	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	442	517	0	ENST00000397062.3:c.245A>G	p.Glu82Gly	p.E82G	ENST00000397062	NM_006164.4	82	gAa/gGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0029975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	656	414	0	ENST00000269305.4:c.673-2A>C		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0029975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	419	291	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49446130	49446130	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	472	663	0	ENST00000301067.7:c.1336G>C	p.Glu446Gln	p.E446Q	ENST00000301067	NM_003482.3	446	Gag/Cag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111588	56111588	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1466506537		P-0029975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	100	102	0	ENST00000399503.3:c.188G>A	p.Arg63His	p.R63H	ENST00000399503	NM_005921.1	63	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0056314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	327	772	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0056314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	205	414	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112155042	112155042	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs863225310		P-0056873-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			158	175	488	0	ENST00000257430.4:c.1312+1G>A		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36214708	36214708	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056873-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			293	107	615	0	ENST00000222270.7:c.3134C>G	p.Pro1045Arg	p.P1045R	ENST00000222270	NM_014727.1	1045	cCa/cGa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332890	152332890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056873-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			261	95	466	0	ENST00000206249.3:c.1196C>T	p.Pro399Leu	p.P399L	ENST00000206249	NM_000125.3	399	cCa/cTa																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986707	36986707	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062049-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			313	101	643	0	ENST00000354822.5:c.982C>T	p.Gln328Ter	p.Q328*	ENST00000354822	NM_001079668.2	328	Cag/Tag																																																																															
RHOA	387	MSKCC	GRCh37	3	49405950	49405950	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062049-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			485	108	454	0	ENST00000418115.1:c.188A>G	p.Gln63Arg	p.Q63R	ENST00000418115	NM_001664.2	63	cAg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0062049-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			352	94	291	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144146	11144146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062049-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			438	122	530	0	ENST00000344626.4:c.3727C>T	p.Arg1243Trp	p.R1243W	ENST00000344626	NM_003072.3	1243	Cgg/Tgg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987031	36987031	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0062049-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			352	90	510	0	ENST00000354822.5:c.658G>T	p.Glu220Ter	p.E220*	ENST00000354822	NM_001079668.2	220	Gag/Tag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190523	32190523	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062049-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			463	126	653	0	ENST00000375023.3:c.216G>T	p.Gln72His	p.Q72H	ENST00000375023	NM_004557.3	72	caG/caT																																																																															
ARAF	369	MSKCC	GRCh37	X	47426097	47426097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062049-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	115	600	0	ENST00000377045.4:c.617C>A	p.Pro206His	p.P206H	ENST00000377045	NM_001654.4	206	cCc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0064260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	62	246	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913476		P-0064260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	71	307	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472548	88472548	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0064260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	141	587	0	ENST00000360948.2:c.2007C>G	p.Tyr669Ter	p.Y669*	ENST00000360948	NM_001012338.2	669	taC/taG																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641021	3641021	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	152	592	0	ENST00000294008.3:c.2618C>G	p.Ala873Gly	p.A873G	ENST00000294008	NM_032444.2	873	gCc/gGc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031215	11031215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	62	621	0	ENST00000327064.4:c.1300C>T	p.Leu434Phe	p.L434F	ENST00000327064	NM_199141.1	434	Ctc/Ttc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164370	47164370	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			72	33	251	0	ENST00000409792.3:c.1756C>A	p.His586Asn	p.H586N	ENST00000409792	NM_014159.6	586	Cat/Aat																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2191376	2191376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	295	517	0	ENST00000349721.2:c.4705G>A	p.Asp1569Asn	p.D1569N	ENST00000349721	NM_003070.3	1569	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0064279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	44	496	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350469	15350469	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0064279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	35	549	0	ENST00000263377.2:c.3445+1G>A		p.X1149_splice	ENST00000263377	NM_058243.2	1149																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27057619	27057640	+	splice_region_variant,intron_variant	Splice_Region	DEL	AAAGTATATTTTCCTTTCCTAC	AAAGTATATTTTCCTTTCCTAC	-			P-0064279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	27	391	0	ENST00000324856.7:c.1351-23_1351-2del		p.X451_splice	ENST00000324856	NM_006015.4	451																																																																																
NF1	4763	MSKCC	GRCh37	17	29528107	29528108	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0064279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	33	145	0	ENST00000358273.4:c.1116dup	p.Val373CysfsTer6	p.V373Cfs*6	ENST00000358273	NM_001042492.2	372	gat/gaTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29588859	29588872	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGAATTTATGAC	GAGGAATTTATGAC	-			P-0064279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	30	288	0	ENST00000358273.4:c.4708_4721del	p.Glu1570Ter	p.E1570*	ENST00000358273	NM_001042492.2	1570	GAGGAATTTATGACt/t																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747937	41747938	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0064279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	54	456	0	ENST00000226382.2:c.831dup	p.Gly278ArgfsTer82	p.G278Rfs*82	ENST00000226382	NM_003924.3	277	-/C																																																																															
RASA1	5921	MSKCC	GRCh37	5	86665719	86665719	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0064279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	27	75	0	ENST00000274376.6:c.1698+2T>A		p.X566_splice	ENST00000274376	NM_002890.2	566																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38061231	38061231	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	197	790	0	ENST00000250448.2:c.758T>A	p.Met253Lys	p.M253K	ENST00000250448	NM_004496.3	253	aTg/aAg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464450	25464450	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369713081		P-0064460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	207	614	0	ENST00000264709.3:c.2063G>A	p.Arg688His	p.R688H	ENST00000264709	NM_175629.2	688	cGc/cAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28931588		P-0064460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			738	158	653	0	ENST00000349496.5:c.94G>C	p.Asp32His	p.D32H	ENST00000349496	NM_001904.3	32	Gac/Cac																																																																															
FANCA	2175	MSKCC	GRCh37	16	89851351	89851351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	104	571	0	ENST00000389301.3:c.1381G>T	p.Gly461Cys	p.G461C	ENST00000389301	NM_000135.2	461	Ggc/Tgc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15964890	15964891	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0064460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	218	657	0	ENST00000268712.3:c.5705_5706del	p.Glu1902GlyfsTer5	p.E1902Gfs*5	ENST00000268712	NM_006311.3	1902	gAG/g																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0064498-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	874	347	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G	rs587782272		P-0064498-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			328	80	369	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
SETDB1	9869	MSKCC	GRCh37	1	150921904	150921904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064498-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			479	87	461	0	ENST00000271640.5:c.1483C>T	p.Arg495Ter	p.R495*	ENST00000271640	NM_001145415.1	495	Cga/Tga																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	9	569	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061249	38061249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	33	903	0	ENST00000250448.2:c.740A>G	p.His247Arg	p.H247R	ENST00000250448	NM_004496.3	247	cAc/cGc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32915083	32915084	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-	rs80359605		P-0064528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	28	588	0	ENST00000380152.3:c.6591_6592del	p.Glu2198AsnfsTer4	p.E2198Nfs*4	ENST00000380152		2197	acTGaa/acaa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2185894	2185894	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	22	509	0	ENST00000398665.3:c.166G>C	p.Glu56Gln	p.E56Q	ENST00000398665	NM_032482.2	56	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0064533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	34	511	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0064533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	35	716	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0064533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	22	335	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0064539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	274	734	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
KDR	3791	MSKCC	GRCh37	4	55976689	55976689	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747477930		P-0064539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	235	587	0	ENST00000263923.4:c.1136C>T	p.Ala379Val	p.A379V	ENST00000263923	NM_002253.2	379	gCg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023717	27023717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			863	72	851	0	ENST00000324856.7:c.823G>A	p.Gly275Arg	p.G275R	ENST00000324856	NM_006015.4	275	Ggg/Agg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647978	3647978	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			974	73	642	0	ENST00000294008.3:c.1186C>G	p.Leu396Val	p.L396V	ENST00000294008	NM_032444.2	396	Ctg/Gtg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89858886	89858886	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	191	572	0	ENST00000389301.3:c.1076A>G	p.Tyr359Cys	p.Y359C	ENST00000389301	NM_000135.2	359	tAc/tGc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207092	1207092	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs778376925		P-0064542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	319	724	0	ENST00000326873.7:c.180C>G	p.Tyr60Ter	p.Y60*	ENST00000326873	NM_000455.4	60	taC/taG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0064542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	53	368	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603093	48603108	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCAGGAAACATCCC	TGGCAGGAAACATCCC	-			P-0064542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	88	524	0	ENST00000342988.3:c.1398_1413del	p.Gly467GlnfsTer4	p.G467Qfs*4	ENST00000342988	NM_005359.5	465	gTGGCAGGAAACATCCCt/gt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161259	56161259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	34	409	0	ENST00000399503.3:c.1128G>T	p.Trp376Cys	p.W376C	ENST00000399503	NM_005921.1	376	tgG/tgT																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679680	33679680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064545-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	333	597	0	ENST00000308377.4:c.2401G>A	p.Asp801Asn	p.D801N	ENST00000308377	NM_152270.3	801	Gat/Aat																																																																															
REST	5978	MSKCC	GRCh37	4	57776827	57776827	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0064545-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	276	542	0	ENST00000309042.7:c.23A>C	p.Gln8Pro	p.Q8P	ENST00000309042	NM_005612.4	8	cAg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0064570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	157	802	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
SOS1	6654	MSKCC	GRCh37	2	39222488	39222488	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1027223518		P-0064570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	98	485	0	ENST00000402219.2:c.3122G>A	p.Arg1041His	p.R1041H	ENST00000402219	NM_005633.3	1041	cGt/cAt																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114611	73114611	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	42	237	0	ENST00000356692.5:c.992A>T	p.Asp331Val	p.D331V	ENST00000356692		331	gAt/gTt																																																																															
MET	4233	MSKCC	GRCh37	7	116417493	116417493	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0064570-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	92	405	0	ENST00000397752.3:c.3310A>T	p.Lys1104Ter	p.K1104*	ENST00000397752	NM_000245.2	1104	Aaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	121	536	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520017		P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			782	29	783	0	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477184	67477184	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1320208623		P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	167	673	0	ENST00000327367.4:c.991G>A	p.Val331Ile	p.V331I	ENST00000327367	NM_005902.3	331	Gtc/Atc																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732318	74732318	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	198	744	0	ENST00000359995.5:c.591G>C	p.Lys197Asn	p.K197N	ENST00000359995	NM_001195427.1	197	aaG/aaC																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732269	74732269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	174	700	0	ENST00000359995.5:c.640G>A	p.Glu214Lys	p.E214K	ENST00000359995	NM_001195427.1	214	Gaa/Aaa																																																																															
MET	4233	MSKCC	GRCh37	7	116435945	116435945	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1395763398		P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	38	617	0	ENST00000397752.3:c.3940G>A	p.Glu1314Lys	p.E1314K	ENST00000397752	NM_000245.2	1314	Gaa/Aaa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117715410	117715410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	22	420	0	ENST00000368508.3:c.1079G>A	p.Arg360Lys	p.R360K	ENST00000368508	NM_002944.2	360	aGa/aAa																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127915891	127915891	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	111	557	0	ENST00000373547.4:c.590C>G	p.Ser197Ter	p.S197*	ENST00000373547	NM_002721.4	197	tCa/tGa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16248841	16248845	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	GAAGG	GAAGG	-			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	46	381	0	ENST00000375759.3:c.1847_1850+1del		p.X616_splice	ENST00000375759	NM_015001.2	616																																																																																
ARID5B	84159	MSKCC	GRCh37	10	63760053	63760053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	33	554	0	ENST00000279873.7:c.706G>A	p.Glu236Lys	p.E236K	ENST00000279873	NM_032199.2	236	Gaa/Aaa																																																																															
CTR9	9646	MSKCC	GRCh37	11	10785325	10785325	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	18	465	0	ENST00000361367.2:c.1093G>C	p.Glu365Gln	p.E365Q	ENST00000361367	NM_014633.3	365	Gag/Cag																																																																															
MDM2	4193	MSKCC	GRCh37	12	69229709	69229709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	19	347	0	ENST00000462284.1:c.785C>T	p.Ser262Leu	p.S262L	ENST00000462284	NM_002392.5	262	tCa/tTa																																																																															
MGA	23269	MSKCC	GRCh37	15	42042712	42042712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	124	589	0	ENST00000219905.7:c.6907G>A	p.Glu2303Lys	p.E2303K	ENST00000219905	NM_001164273.1	2303	Gaa/Aaa																																																																															
MGA	23269	MSKCC	GRCh37	15	42042790	42042790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	100	524	0	ENST00000219905.7:c.6985G>A	p.Glu2329Lys	p.E2329K	ENST00000219905	NM_001164273.1	2329	Gag/Aag																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51503134	51503134	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	65	632	0	ENST00000260433.2:c.1383G>C	p.Lys461Asn	p.K461N	ENST00000260433		461	aaG/aaC																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827856	72827856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	46	610	0	ENST00000268489.5:c.8725G>A	p.Glu2909Lys	p.E2909K	ENST00000268489	NM_006885.3	2909	Gaa/Aaa																																																																															
NF1	4763	MSKCC	GRCh37	17	29664397	29664397	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	24	395	1	ENST00000358273.4:c.6439C>T	p.Gln2147Ter	p.Q2147*	ENST00000358273	NM_001042492.2	2147	Caa/Taa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619091	37619091	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	56	671	1	ENST00000447079.4:c.767C>G	p.Ser256Trp	p.S256W	ENST00000447079	NM_015083.1	256	tCg/tGg																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732259	74732259	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	165	682	0	ENST00000359995.5:c.650G>C	p.Gly217Ala	p.G217A	ENST00000359995	NM_001195427.1	217	gGa/gCa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1646381	1646381	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			749	79	782	0	ENST00000344749.5:c.118C>A	p.Leu40Met	p.L40M	ENST00000344749	NM_001136139.2	40	Ctg/Atg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228572	36228572	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1415120926		P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	141	680	0	ENST00000222270.7:c.7586C>T	p.Ser2529Phe	p.S2529F	ENST00000222270	NM_014727.1	2529	tCc/tTc																																																																															
AKT2	208	MSKCC	GRCh37	19	40761112	40761112	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	142	586	0	ENST00000392038.2:c.240G>C	p.Trp80Cys	p.W80C	ENST00000392038	NM_001626.4	80	tgG/tgC																																																																															
CIC	23152	MSKCC	GRCh37	19	42794857	42794857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	46	730	0	ENST00000575354.2:c.1937G>A	p.Arg646Lys	p.R646K	ENST00000575354	NM_015125.3	646	aGa/aAa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965662	25965662	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	48	598	0	ENST00000435504.4:c.3544G>C	p.Asp1182His	p.D1182H	ENST00000435504		1182	Gat/Cat																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67632062	67632062	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	10	349	0	ENST00000272342.5:c.2248C>G	p.Leu750Val	p.L750V	ENST00000272342	NM_019002.3	750	Ctg/Gtg																																																																															
ATR	545	MSKCC	GRCh37	3	142272508	142272508	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	20	349	0	ENST00000350721.4:c.2607G>C	p.Leu869Phe	p.L869F	ENST00000350721	NM_001184.3	869	ttG/ttC																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987359	2987359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	36	610	0	ENST00000396946.4:c.70G>A	p.Glu24Lys	p.E24K	ENST00000396946	NM_032415.4	24	Gag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151902283	151902283	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	10	90	0	ENST00000262189.6:c.3869G>C	p.Arg1290Thr	p.R1290T	ENST00000262189	NM_170606.2	1290	aGa/aCa																																																																															
TEK	7010	MSKCC	GRCh37	9	27206782	27206782	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	66	560	0	ENST00000380036.4:c.2567G>C	p.Arg856Thr	p.R856T	ENST00000380036	NM_000459.3	856	aGa/aCa																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321364	1321364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064575-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	36	650	0	ENST00000381566.1:c.391C>A	p.Gln131Lys	p.Q131K	ENST00000381566		131	Cag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711904	89711904	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0064584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	216	554	0	ENST00000371953.3:c.522T>A	p.Tyr174Ter	p.Y174*	ENST00000371953	NM_000314.4	174	taT/taA																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577466	64577468	+	frameshift_variant	Frame_Shift_Del	DEL	AAG	AAG	TT			P-0064584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	153	820	1	ENST00000337652.1:c.114_116delinsAA	p.Leu39ArgfsTer80	p.L39Rfs*80	ENST00000337652	NM_130803.2	38	tcCTTg/tcAAg																																																																															
IGF1	3479	MSKCC	GRCh37	12	102874157	102874157	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0064584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	61	466	0	ENST00000307046.8:c.3G>A	p.Met1?	p.M1?	ENST00000307046	NM_001111285.1	1	atG/atA																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56170909	56170910	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0064584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	318	882	0	ENST00000399503.3:c.1743_1744del	p.Glu581AspfsTer9	p.E581Dfs*9	ENST00000399503	NM_005921.1	579	gtGAga/gtga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	101	934	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945655	151945655	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	90	362	0	ENST00000262189.6:c.1864G>T	p.Glu622Ter	p.E622*	ENST00000262189	NM_170606.2	622	Gaa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0064586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	44	632	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579364	7579364	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	82	777	0	ENST00000269305.4:c.323G>T	p.Gly108Val	p.G108V	ENST00000269305	NM_001126112.2	108	gGt/gTt																																																																															
ATR	545	MSKCC	GRCh37	3	142178190	142178190	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0064586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	31	470	0	ENST00000350721.4:c.7228A>C	p.Met2410Leu	p.M2410L	ENST00000350721	NM_001184.3	2410	Atg/Ctg																																																																															
REST	5978	MSKCC	GRCh37	4	57777205	57777205	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	40	680	0	ENST00000309042.7:c.401A>G	p.Tyr134Cys	p.Y134C	ENST00000309042	NM_005612.4	134	tAc/tGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242501	55242501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	38	536	0	ENST00000275493.2:c.2271G>T	p.Lys757Asn	p.K757N	ENST00000275493	NM_005228.3	757	aaG/aaT																																																																															
IRF4	3662	MSKCC	GRCh37	6	397205	397205	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372869810		P-0064588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	183	963	0	ENST00000380956.4:c.590C>T	p.Thr197Met	p.T197M	ENST00000380956	NM_001195286.1	197	aCg/aTg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748048	41748048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	159	381	3	ENST00000226382.2:c.721G>A	p.Ala241Thr	p.A241T	ENST00000226382	NM_003924.3	241	Gca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425375	49425375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	37	1015	0	ENST00000301067.7:c.13113C>A	p.Ser4371Arg	p.S4371R	ENST00000301067	NM_003482.3	4371	agC/agA																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391430	139391430	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	190	1047	0	ENST00000277541.6:c.6761A>T	p.Glu2254Val	p.E2254V	ENST00000277541	NM_017617.3	2254	gAg/gTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0051880-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			904	373	644	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0051880-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			872	268	583	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0051880-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			528	229	589	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61324115	61324115	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs61733410		P-0051880-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			491	36	512	0	ENST00000283752.5:c.718G>C	p.Asp240His	p.D240H	ENST00000283752	NM_006919.2	240	Gat/Cat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0058930-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			514	103	838	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0058930-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			505	102	673	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539950	187539950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058930-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			656	82	767	0	ENST00000441802.2:c.7790G>T	p.Arg2597Leu	p.R2597L	ENST00000441802	NM_005245.3	2597	cGa/cTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0058930-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			466	137	545	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7576900	7576956	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAA	GAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAA	-			P-0058930-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			652	179	888	0	ENST00000269305.4:c.920-30_946del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0062310-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			625	40	522	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180045823	180045823	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1446557372		P-0062310-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			530	270	759	0	ENST00000261937.6:c.2948C>T	p.Ala983Val	p.A983V	ENST00000261937	NM_182925.4	983	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0062310-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			260	431	313	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932519	39932520	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0062310-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			122	268	356	0	ENST00000378444.4:c.2079dup	p.Gly694TrpfsTer46	p.G694Wfs*46	ENST00000378444	NM_001123385.1	693	-/T																																																																															
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0062737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	59	795	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																															
MGA	23269	MSKCC	GRCh37	15	42028431	42028431	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0062737-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	40	651	0	ENST00000219905.7:c.3969T>G	p.Tyr1323Ter	p.Y1323*	ENST00000219905	NM_001164273.1	1323	taT/taG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057520005		P-0063001-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			309	271	684	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132522	11132522	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778175819		P-0063001-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			517	11	0	0	ENST00000344626.4:c.2738C>T	p.Pro913Leu	p.P913L	ENST00000344626	NM_003072.3	913	cCg/cTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1255443	1255443	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763381198		P-0063001-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			289	313	689	0	ENST00000310581.5:c.3116C>T	p.Thr1039Met	p.T1039M	ENST00000310581	NM_198253.2	1039	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0063001-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			104	64	337	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087396	27087397	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0063001-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			399	96	561	0	ENST00000324856.7:c.1970_1971insC	p.Ser658GlufsTer18	p.S658Efs*18	ENST00000324856	NM_006015.4	657	ctg/ctCg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31390242	31390242	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0063001-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			479	270	575	0	ENST00000328111.2:c.2197C>T	p.Arg733Ter	p.R733*	ENST00000328111	NM_006892.3	733	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0063555-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			468	286	803	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524486	44524486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063555-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			489	184	505	0	ENST00000291552.4:c.71T>C	p.Ile24Thr	p.I24T	ENST00000291552	NM_006758.2	24	aTt/aCt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057056	180057056	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142274156		P-0063555-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			740	123	749	0	ENST00000261937.6:c.563G>A	p.Arg188Gln	p.R188Q	ENST00000261937	NM_182925.4	188	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0063555-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			358	379	545	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0063947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			619	66	672	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0063947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			703	61	813	2	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs587781525		P-0063947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			641	56	837	0	ENST00000269305.4:c.842A>T	p.Asp281Val	p.D281V	ENST00000269305	NM_001126112.2	281	gAc/gTc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21565435	21565435	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1217575272		P-0063947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			640	42	795	1	ENST00000382592.4:c.451C>T	p.Arg151Trp	p.R151W	ENST00000382592	NM_014572.2	151	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974762	21974762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			556	89	799	0	ENST00000304494.5:c.65G>C	p.Arg22Pro	p.R22P	ENST00000304494	NM_000077.4	22	cGg/cCg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274147	10274147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			411	68	715	0	ENST00000330684.3:c.122G>A	p.Gly41Asp	p.G41D	ENST00000330684	NM_001134407.1	41	gGt/gAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602716	10602716	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0063947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			608	100	754	0	ENST00000171111.5:c.862T>G	p.Cys288Gly	p.C288G	ENST00000171111	NM_203500.1	288	Tgc/Ggc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0063947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			304	42	405	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP63	8626	MSKCC	GRCh37	3	189587133	189587133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			501	71	499	0	ENST00000264731.3:c.1150G>T	p.Gly384Cys	p.G384C	ENST00000264731	NM_003722.4	384	Ggt/Tgt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193202147	193202147	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			520	37	568	0	ENST00000367435.3:c.1179G>C	p.Lys393Asn	p.K393N	ENST00000367435	NM_024529.4	393	aaG/aaC																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942541	71942541	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0063947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			485	32	574	0	ENST00000298229.2:c.1498-1G>A		p.X500_splice	ENST00000298229	NM_001567.3	500																																																																																
GLI1	2735	MSKCC	GRCh37	12	57863385	57863385	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0063947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			666	59	732	0	ENST00000228682.2:c.1480A>T	p.Thr494Ser	p.T494S	ENST00000228682	NM_005269.2	494	Act/Tct																																																																															
DICER1	23405	MSKCC	GRCh37	14	95557630	95557630	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			620	46	634	0	ENST00000343455.3:c.5437G>C	p.Glu1813Gln	p.E1813Q	ENST00000343455	NM_177438.2	1813	Gag/Cag																																																																															
IDH2	3418	MSKCC	GRCh37	15	90633735	90633735	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			606	118	833	0	ENST00000330062.3:c.349A>C	p.Thr117Pro	p.T117P	ENST00000330062	NM_002168.2	117	Acc/Ccc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612361	1612361	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201939465		P-0063947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			582	38	820	1	ENST00000344749.5:c.1658C>T	p.Ala553Val	p.A553V	ENST00000344749	NM_001136139.2	553	gCg/gTg																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110266	3110266	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			599	96	821	0	ENST00000078429.4:c.256G>T	p.Ala86Ser	p.A86S	ENST00000078429	NM_002067.2	86	Gcc/Tcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36209154	36209154	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			960	144	1021	0	ENST00000222270.7:c.235del	p.Arg79GlyfsTer88	p.R79Gfs*88	ENST00000222270	NM_014727.1	78	cgC/cg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31380541	31380541	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			714	48	744	0	ENST00000328111.2:c.1031G>C	p.Gly344Ala	p.G344A	ENST00000328111	NM_006892.3	344	gGg/gCg																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99809095	99809095	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	17	371	0	ENST00000280892.6:c.290A>T	p.Asn97Ile	p.N97I	ENST00000280892	NM_001130678.1	97	aAc/aTc																																																																															
TET2	54790	MSKCC	GRCh37	4	106156606	106156606	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			569	44	680	0	ENST00000380013.4:c.1507G>C	p.Glu503Gln	p.E503Q	ENST00000380013	NM_001127208.2	503	Gag/Cag																																																																															
TERT	7015	MSKCC	GRCh37	5	1294132	1294132	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			833	47	912	0	ENST00000310581.5:c.869C>G	p.Ser290Cys	p.S290C	ENST00000310581	NM_198253.2	290	tCt/tGt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933505	39933505	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063947-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			300	52	436	0	ENST00000378444.4:c.1094C>G	p.Ser365Cys	p.S365C	ENST00000378444	NM_001123385.1	365	tCc/tGc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822609	72822609	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771122441		P-0064345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	229	572	0	ENST00000268489.5:c.9566C>T	p.Ala3189Val	p.A3189V	ENST00000268489	NM_006885.3	3189	gCg/gTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805074	89805074	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs74977201		P-0064345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	38	522	3	ENST00000389301.3:c.4303G>A	p.Ala1435Thr	p.A1435T	ENST00000389301	NM_000135.2	1435	Gcc/Acc																																																																															
NF1	4763	MSKCC	GRCh37	17	29548938	29548938	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0064345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	16	163	0	ENST00000358273.4:c.1714del	p.Glu572ArgfsTer14	p.E572Rfs*14	ENST00000358273	NM_001042492.2	571	tGg/tg																																																																															
NF1	4763	MSKCC	GRCh37	17	29654553	29654553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876657714		P-0064345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	143	347	0	ENST00000358273.4:c.5305C>T	p.Arg1769Ter	p.R1769*	ENST00000358273	NM_001042492.2	1769	Cga/Tga																																																																															
BRCA1	672	MSKCC	GRCh37	17	41223073	41223073	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	179	554	0	ENST00000357654.3:c.4858A>T	p.Thr1620Ser	p.T1620S	ENST00000357654	NM_007294.3	1620	Act/Tct																																																																															
STK11	6794	MSKCC	GRCh37	19	1220698	1220699	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0064345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	134	535	0	ENST00000326873.7:c.716_717delinsCT	p.Trp239Ser	p.W239S	ENST00000326873	NM_000455.4	239	tGG/tCT																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231345	5231345	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765642813		P-0064345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	171	510	0	ENST00000357368.4:c.2131G>A	p.Val711Met	p.V711M	ENST00000357368	NM_002850.3	711	Gtg/Atg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607808	46607808	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149676792		P-0064345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	179	579	0	ENST00000263734.3:c.1997C>T	p.Pro666Leu	p.P666L	ENST00000263734	NM_001430.4	666	cCg/cTg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561444	9561444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	205	553	0	ENST00000353224.5:c.338C>T	p.Ser113Phe	p.S113F	ENST00000353224	NM_177990.2	113	tCc/tTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980855	40980855	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	164	480	0	ENST00000373198.4:c.1631A>G	p.Lys544Arg	p.K544R	ENST00000373198	NM_133170.3	544	aAg/aGg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52712520	52712520	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	102	367	0	ENST00000394830.3:c.232C>T	p.Arg78Ter	p.R78*	ENST00000394830	NM_018313.4	78	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542813	187542813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	144	474	0	ENST00000441802.2:c.4927G>A	p.Gly1643Ser	p.G1643S	ENST00000441802	NM_005245.3	1643	Ggc/Agc																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225387	26225387	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776406667		P-0064345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	187	511	1	ENST00000360408.1:c.5C>T	p.Ala2Val	p.A2V	ENST00000360408	NM_003532.2	2	gCg/gTg																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790900	89790900	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	160	510	0	ENST00000336032.3:c.287A>T	p.Lys96Met	p.K96M	ENST00000336032	NM_006813.2	96	aAg/aTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2951903	2951903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	165	426	0	ENST00000396946.4:c.3047G>T	p.Arg1016Ile	p.R1016I	ENST00000396946	NM_032415.4	1016	aGa/aTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636759	8636759	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1318804406		P-0064345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	29	444	0	ENST00000356435.5:c.150C>A	p.Asp50Glu	p.D50E	ENST00000356435		50	gaC/gaA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410981	63410981	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0064345-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	64	592	0	ENST00000330258.3:c.2186A>C	p.Glu729Ala	p.E729A	ENST00000330258	NM_152424.3	729	gAg/gCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0064376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	102	783	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0064376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	62	656	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0064376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	15	278	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604668	48604668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	55	537	0	ENST00000342988.3:c.1490G>A	p.Arg497His	p.R497H	ENST00000342988	NM_005359.5	497	cGc/cAc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514758	103514758	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143667470		P-0064376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	86	668	0	ENST00000355739.4:c.1259G>A	p.Arg420His	p.R420H	ENST00000355739	NM_000123.3	420	cGt/cAt																																																																															
PGR	5241	MSKCC	GRCh37	11	100920753	100920753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	39	414	0	ENST00000325455.5:c.2395C>T	p.Leu799Phe	p.L799F	ENST00000325455	NM_001202474.3	799	Ctt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0064435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	143	488	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625159	69625159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	53	708	1	ENST00000334134.2:c.634C>T	p.Arg212Trp	p.R212W	ENST00000334134	NM_005247.2	212	Cgg/Tgg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566818	212566818	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762866612		P-0064435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	23	519	0	ENST00000342788.4:c.1363G>A	p.Ala455Thr	p.A455T	ENST00000342788	NM_005235.2	455	Gca/Aca																																																																															
FLT4	2324	MSKCC	GRCh37	5	180041074	180041076	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0064435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	69	654	0	ENST00000261937.6:c.3323_3325del	p.Phe1108del	p.F1108del	ENST00000261937	NM_182925.4	1108	tTCTct/tct																																																																															
MPL	4352	MSKCC	GRCh37	1	43814576	43814576	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	47	724	0	ENST00000372470.3:c.1371C>A	p.Tyr457Ter	p.Y457*	ENST00000372470	NM_005373.2	457	taC/taA																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748166	72748166	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	32	463	0	ENST00000357731.5:c.12G>T	p.Met4Ile	p.M4I	ENST00000357731	NM_173808.2	4	atG/atT																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940202	49940202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	211	721	0	ENST00000296474.3:c.841G>A	p.Ala281Thr	p.A281T	ENST00000296474	NM_002447.2	281	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112174033	112174033	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0064435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	59	594	2	ENST00000257430.4:c.2742T>A	p.Cys914Ter	p.C914*	ENST00000257430	NM_000038.5	914	tgT/tgA																																																																															
STK19	8859	MSKCC	GRCh37	6	31940151	31940151	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	207	878	0	ENST00000375331.2:c.293A>G	p.His98Arg	p.H98R	ENST00000375331	NM_004197.1	98	cAt/cGt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467800	50467800	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064435-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	149	651	0	ENST00000331340.3:c.1035C>A	p.Ser345Arg	p.S345R	ENST00000331340	NM_006060.4	345	agC/agA																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0064439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	208	527	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0064439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	150	770	0	ENST00000269305.4:c.993+2T>G		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0064439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	245	595	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112137081	112137081	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0064439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			34	116	348	0	ENST00000257430.4:c.834+1G>C		p.X278_splice	ENST00000257430	NM_000038.5	278																																																																																
AR	367	MSKCC	GRCh37	X	66941695	66941695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768366293		P-0064439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	47	306	0	ENST00000374690.3:c.2339G>A	p.Arg780Gln	p.R780Q	ENST00000374690	NM_000044.3	780	cGg/cAg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115111972	115111972	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0064441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	103	558	0	ENST00000257566.3:c.1768C>T	p.Gln590Ter	p.Q590*	ENST00000257566	NM_016569.3	590	Cag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117430	115117431	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0064441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	89	484	0	ENST00000257566.3:c.743dup	p.Tyr248Ter	p.Y248*	ENST00000257566	NM_016569.3	248	tac/taAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	71	389	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
XPO1	7514	MSKCC	GRCh37	2	61721102	61721102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	62	430	0	ENST00000401558.2:c.1172C>T	p.Ser391Phe	p.S391F	ENST00000401558	NM_003400.3	391	tCt/tTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0064441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	28	214	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KIT	3815	MSKCC	GRCh37	4	55524236	55524236	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1490714621		P-0064441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	99	477	3	ENST00000288135.5:c.55C>T	p.Arg19Cys	p.R19C	ENST00000288135	NM_000222.2	19	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112174466	112174466	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1253882360		P-0064441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	70	401	0	ENST00000257430.4:c.3175G>A	p.Glu1059Lys	p.E1059K	ENST00000257430	NM_000038.5	1059	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175154	112175154	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	75	402	0	ENST00000257430.4:c.3863G>C	p.Gly1288Ala	p.G1288A	ENST00000257430	NM_000038.5	1288	gGa/gCa																																																																															
APC	324	MSKCC	GRCh37	5	112175226	112175226	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	77	425	0	ENST00000257430.4:c.3935G>C	p.Gly1312Ala	p.G1312A	ENST00000257430	NM_000038.5	1312	gGa/gCa																																																																															
APC	324	MSKCC	GRCh37	5	112175846	112175846	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064441-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	86	467	0	ENST00000257430.4:c.4555G>C	p.Asp1519His	p.D1519H	ENST00000257430	NM_000038.5	1519	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579718	7579718	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0064465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	30	493	0	ENST00000269305.4:c.78del	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	26	ctT/ct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0064465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	52	372	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971081	21971081	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0064465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	50	560	0	ENST00000304494.5:c.277del	p.Thr93ArgfsTer53	p.T93Rfs*53	ENST00000304494	NM_000077.4	93	Acg/cg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168694	32168694	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143040647		P-0062149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	138	492	0	ENST00000375023.3:c.4229G>A	p.Arg1410His	p.R1410H	ENST00000375023	NM_004557.3	1410	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577557	7577558	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGAACTGTTACACATGTAGTTGTAGTGGATGGT			P-0062149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	94	406	0	ENST00000269305.4:c.691_723dup	p.Thr231_Ser241dup	p.T231_S241dup	ENST00000269305	NM_001126112.2	231	-/ACCATCCACTACAACTACATGTGTAACAGTTCC																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187691	11187692	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0063732-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			66	10	462	0	ENST00000361445.4:c.6205_6206insG	p.Ser2069CysfsTer3	p.S2069Cfs*3	ENST00000361445	NM_004958.3	2069	tcc/tGcc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9928076	9928076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	105	516	0	ENST00000330684.3:c.1663G>A	p.Ala555Thr	p.A555T	ENST00000330684	NM_001134407.1	555	Gcc/Acc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434697	49434697	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	124	823	0	ENST00000301067.7:c.6856G>T	p.Glu2286Ter	p.E2286*	ENST00000301067	NM_003482.3	2286	Gag/Tag																																																																															
INHA	3623	MSKCC	GRCh37	2	220439806	220439806	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142337821		P-0064227-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	121	754	1	ENST00000243786.2:c.659G>A	p.Arg220Gln	p.R220Q	ENST00000243786	NM_002191.3	220	cGg/cAg																																																																															
ERG	2078	MSKCC	GRCh37	21	39817482	39817482	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	81	616	0	ENST00000288319.7:c.81C>A	p.His27Gln	p.H27Q	ENST00000288319	NM_182918.3	27	caC/caA																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690205	33690205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	95	706	0	ENST00000308377.4:c.622C>T	p.Pro208Ser	p.P208S	ENST00000308377	NM_152270.3	208	Cct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs1057517840		P-0064233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	99	810	0	ENST00000269305.4:c.626_627del	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9783301	9783301	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763402967		P-0064233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	23	689	0	ENST00000377346.4:c.2545G>A	p.Ala849Thr	p.A849T	ENST00000377346	NM_005026.3	849	Gcc/Acc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575055	48575055	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0064233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	49	461	0	ENST00000342988.3:c.250-1G>A		p.X84_splice	ENST00000342988	NM_005359.5	84																																																																																
PREX2	80243	MSKCC	GRCh37	8	69033249	69033249	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs114811202		P-0064233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	68	624	0	ENST00000288368.4:c.3689G>A	p.Arg1230Gln	p.R1230Q	ENST00000288368	NM_024870.2	1230	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	97	407	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0064234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			758	161	578	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579347	7579348	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0064234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	158	601	0	ENST00000269305.4:c.339_340del	p.Leu114AlafsTer34	p.L114Afs*34	ENST00000269305	NM_001126112.2	113	ttCTtg/tttg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0064234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			748	131	453	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686391	30686392	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCT			P-0064234-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			812	143	620	0	ENST00000359013.4:c.323_325dup	p.Val108_Cys109insPhe	p.V108_C109insF	ENST00000359013	NM_001024847.2	108	gtc/gTCTtc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397516896		P-0064272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	106	409	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																															
STK11	6794	MSKCC	GRCh37	19	1220579	1220579	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0064272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	234	739	0	ENST00000326873.7:c.598-1G>T		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																																
TP53	7157	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0064272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	172	704	0	ENST00000269305.4:c.97-1G>T		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
FGF4	2249	MSKCC	GRCh37	11	69589711	69589711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	61	1178	0	ENST00000168712.1:c.142G>A	p.Glu48Lys	p.E48K	ENST00000168712	NM_002007.2	48	Gag/Aag																																																																															
RB1	5925	MSKCC	GRCh37	13	48955487	48955548	+	frameshift_variant	Frame_Shift_Del	DEL	TTTATCAAAGCAGAAGGCAACTTGACAAGAGAAATGATAAAACATTTAGAACGATGTGAACA	TTTATCAAAGCAGAAGGCAACTTGACAAGAGAAATGATAAAACATTTAGAACGATGTGAACA	-			P-0064272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	53	359	0	ENST00000267163.4:c.1604_1665del	p.Phe535SerfsTer16	p.F535Sfs*16	ENST00000267163	NM_000321.2	535	TTTATCAAAGCAGAAGGCAACTTGACAAGAGAAATGATAAAACATTTAGAACGATGTGAACAt/t																																																																															
DIS3	22894	MSKCC	GRCh37	13	73349357	73349357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	137	447	0	ENST00000377767.4:c.979G>A	p.Glu327Lys	p.E327K	ENST00000377767	NM_014953.3	327	Gaa/Aaa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30133006	30133006	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	246	521	0	ENST00000331968.5:c.595G>T	p.Val199Leu	p.V199L	ENST00000331968	NM_002742.2	199	Gtg/Ttg																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679770	33679770	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	41	617	0	ENST00000308377.4:c.2311C>T	p.Gln771Ter	p.Q771*	ENST00000308377	NM_152270.3	771	Cag/Tag																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202807	128202807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	124	700	1	ENST00000341105.2:c.913C>A	p.Leu305Ile	p.L305I	ENST00000341105	NM_032638.4	305	Ctc/Atc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191077	185191077	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	131	738	0	ENST00000265026.3:c.1958A>G	p.His653Arg	p.H653R	ENST00000265026	NM_004721.4	653	cAt/cGt																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803469	32803470	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0064272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	76	569	0	ENST00000374899.4:c.689dup	p.Ser231LeufsTer15	p.S231Lfs*15	ENST00000374899	NM_018833.2	230	ttc/ttTc																																																																															
MET	4233	MSKCC	GRCh37	7	116371902	116371902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	34	494	0	ENST00000397752.3:c.1381C>T	p.Arg461Cys	p.R461C	ENST00000397752	NM_000245.2	461	Cgc/Tgc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465643	8465643	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	89	452	0	ENST00000356435.5:c.3537C>A	p.Ser1179Arg	p.S1179R	ENST00000356435		1179	agC/agA																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597395	10597395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	32	609	0	ENST00000171111.5:c.1808G>T	p.Gly603Val	p.G603V	ENST00000171111	NM_203500.1	603	gGg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912660		P-0064275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	35	591	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435229	110435229	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1443489792		P-0064275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	52	786	0	ENST00000375856.3:c.3172G>A	p.Ala1058Thr	p.A1058T	ENST00000375856	NM_003749.2	1058	Gcc/Acc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220695	1220696	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0064275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	37	629	0	ENST00000326873.7:c.714_715del	p.Ile238MetfsTer27	p.I238Mfs*27	ENST00000326873	NM_000455.4	238	aTC/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0064276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	25	782	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913253	39913253	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0064276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	34	640	1	ENST00000378444.4:c.4862del	p.Pro1621GlnfsTer53	p.P1621Qfs*53	ENST00000378444	NM_001123385.1	1621	cCa/ca																																																																															
JAK1	3716	MSKCC	GRCh37	1	65321300	65321300	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757281554		P-0064276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	28	691	0	ENST00000342505.4:c.1540C>T	p.Arg514Cys	p.R514C	ENST00000342505	NM_002227.2	514	Cgc/Tgc																																																																															
SDHD	6392	MSKCC	GRCh37	11	111965530	111965530	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0064276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	24	347	0	ENST00000375549.3:c.316G>T	p.Gly106Cys	p.G106C	ENST00000375549	NM_003002.3	106	Ggc/Tgc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18715665	18715665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	13	464	0	ENST00000266497.5:c.3496C>T	p.Pro1166Ser	p.P1166S	ENST00000266497		1166	Cct/Tct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222872	36222872	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	29	693	0	ENST00000222270.7:c.5501G>T	p.Arg1834Leu	p.R1834L	ENST00000222270	NM_014727.1	1834	cGc/cTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100319	27100319	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0064276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	18	763	0	ENST00000324856.7:c.4032del	p.Thr1345ProfsTer136	p.T1345Pfs*136	ENST00000324856	NM_006015.4	1344	tCc/tc																																																																															
RET	5979	MSKCC	GRCh37	10	43610120	43610120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	43	791	0	ENST00000355710.3:c.2072G>T	p.Gly691Val	p.G691V	ENST00000355710	NM_020975.4	691	gGt/gTt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243817	46243817	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0064276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	13	388	0	ENST00000334344.6:c.1913-2A>T		p.X638_splice	ENST00000334344	NM_152641.2	638																																																																																
IGF1	3479	MSKCC	GRCh37	12	102869457	102869457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	30	463	0	ENST00000307046.8:c.184C>T	p.Leu62Phe	p.L62F	ENST00000307046	NM_001111285.1	62	Ctt/Ttt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817799	3817799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	18	508	0	ENST00000262367.5:c.3172G>A	p.Glu1058Lys	p.E1058K	ENST00000262367	NM_004380.2	1058	Gaa/Aaa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89806508	89806508	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0064276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	32	483	0	ENST00000389301.3:c.3829-1G>A		p.X1277_splice	ENST00000389301	NM_000135.2	1277																																																																																
DOT1L	84444	MSKCC	GRCh37	19	2202727	2202727	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	30	532	0	ENST00000398665.3:c.736G>T	p.Gly246Cys	p.G246C	ENST00000398665	NM_032482.2	246	Ggt/Tgt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229612	5229612	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	25	568	0	ENST00000357368.4:c.2239G>T	p.Gly747Cys	p.G747C	ENST00000357368	NM_002850.3	747	Ggc/Tgc																																																																															
CENPA	1058	MSKCC	GRCh37	2	27015109	27015109	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0064276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	14	308	0	ENST00000335756.4:c.210+1G>T		p.X70_splice	ENST00000335756	NM_001809.3	70																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212570117	212570117	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0064276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	11	338	0	ENST00000342788.4:c.1125-1G>T		p.X375_splice	ENST00000342788	NM_005235.2	375																																																																																
ZNRF3	84133	MSKCC	GRCh37	22	29446322	29446322	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	38	552	0	ENST00000544604.2:c.2153C>G	p.Pro718Arg	p.P718R	ENST00000544604	NM_001206998.1	718	cCc/cGc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231656	66231656	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064276-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	14	382	0	ENST00000273854.3:c.2044G>T	p.Gly682Ter	p.G682*	ENST00000273854	NM_004439.5	682	Gga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0064277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	1031	382	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0064277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	219	643	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220382	1220382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	72	612	0	ENST00000326873.7:c.475C>T	p.Gln159Ter	p.Q159*	ENST00000326873	NM_000455.4	159	Cag/Tag																																																																															
ATRX	546	MSKCC	GRCh37	X	76939154	76939154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	43	546	0	ENST00000373344.5:c.1594C>T	p.Leu532Phe	p.L532F	ENST00000373344	NM_000489.3	532	Ctt/Ttt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162722953	162722953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	191	498	0	ENST00000367921.3:c.151C>G	p.Gln51Glu	p.Q51E	ENST00000367921	NM_006182.2	51	Cag/Gag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0064278-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	111	294	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519986		P-0064278-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	104	538	0	ENST00000269305.4:c.809T>C	p.Phe270Ser	p.F270S	ENST00000269305	NM_001126112.2	270	tTt/tCt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55136840	55136840	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1227372630		P-0064278-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	38	144	0	ENST00000257290.5:c.1162G>A	p.Asp388Asn	p.D388N	ENST00000257290	NM_006206.4	388	Gac/Aac																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748448	162748448	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0064280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	44	488	0	ENST00000367921.3:c.2364del	p.Tyr789IlefsTer39	p.Y789Ifs*39	ENST00000367921	NM_006182.2	788	Ccc/cc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249013	55249014	+	protein_altering_variant	In_Frame_Ins	INS	-	-	GGG			P-0064280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	891	586	0	ENST00000275493.2:c.2311_2312insGGG	p.Asn771delinsArgAsp	p.N771delinsRD	ENST00000275493	NM_005228.3	771	aac/aGGGac																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100006	157100035	+	inframe_deletion	In_Frame_Del	DEL	GGAGGAGGAGGAGGCAGCGGAGGAGGAGGA	GGAGGAGGAGGAGGCAGCGGAGGAGGAGGA	-			P-0064280-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	52	724	0	ENST00000346085.5:c.956_985del	p.Gly319_Gly328del	p.G319_G328del	ENST00000346085	NM_020732.3	315	GGAGGAGGAGGAGGCAGCGGAGGAGGAGGA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0064338-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	116	620	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0064338-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	89	651	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2958219	2958219	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0064338-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	79	577	0	ENST00000396946.4:c.2513C>T	p.Ala838Val	p.A838V	ENST00000396946	NM_032415.4	838	gCc/gTc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650462	48650462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064338-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	91	872	0	ENST00000376670.3:c.432C>A	p.Asp144Glu	p.D144E	ENST00000376670	NM_002049.3	144	gaC/gaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0064338-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	77	379	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222554	2222554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064338-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	102	686	0	ENST00000326181.6:c.748C>A	p.His250Asn	p.H250N	ENST00000326181	NM_032271.2	250	Cac/Aac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971144	21971209	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCT	AGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCT	-			P-0064338-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	91	721	0	ENST00000304494.5:c.151-2_214del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0064340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	98	481	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411276	63411276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	72	434	0	ENST00000330258.3:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000330258	NM_152424.3	631	Cga/Tga																																																																															
ERG	2078	MSKCC	GRCh37	21	39764328	39764328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747584221		P-0064340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	30	531	0	ENST00000288319.7:c.784G>A	p.Gly262Ser	p.G262S	ENST00000288319	NM_182918.3	262	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	10	718	0	ENST00000269305.4:c.469G>C	p.Val157Leu	p.V157L	ENST00000269305	NM_001126112.2	157	Gtc/Ctc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710654	114710655	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0064340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	132	563	0	ENST00000543371.1:c.142_143del	p.Leu48SerfsTer3	p.L48Sfs*3	ENST00000543371	NM_001198531.1	47	TCt/t																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0064340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			107	59	376	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108163363	108163363	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	20	441	0	ENST00000278616.4:c.4454A>T	p.Asp1485Val	p.D1485V	ENST00000278616	NM_000051.3	1485	gAt/gTt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350305	89350305	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0064340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	51	697	0	ENST00000301030.4:c.2645A>C	p.Lys882Thr	p.K882T	ENST00000301030	NM_001256183.1	882	aAg/aCg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229685	5229686	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCGCTGGGCACTGGCGGGCGGGAGGGG			P-0064340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	14	361	0	ENST00000357368.4:c.2156-17_2165dup	p.Pro723_Pro724insSerArgProProValProSerAlaPro	p.P723_P724insSRPPVPSAP	ENST00000357368	NM_002850.3	722	gcg/gcCCCCTCCCGCCCGCCAGTGCCCAGCGCg																																																																															
APC	324	MSKCC	GRCh37	5	112175856	112175857	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0064340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	29	560	0	ENST00000257430.4:c.4567dup	p.Arg1523LysfsTer10	p.R1523Kfs*10	ENST00000257430	NM_000038.5	1522	tta/ttAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604722	48604722	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064342-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	44	593	0	ENST00000342988.3:c.1544G>T	p.Arg515Ile	p.R515I	ENST00000342988	NM_005359.5	515	aGa/aTa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412309	139412309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	79	547	0	ENST00000277541.6:c.1336G>T	p.Gly446Cys	p.G446C	ENST00000277541	NM_017617.3	446	Ggc/Tgc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701263	43701263	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1157211964		P-0064364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	69	497	0	ENST00000382044.4:c.5432C>T	p.Ala1811Val	p.A1811V	ENST00000382044	NM_001141980.1	1811	gCg/gTg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441235	52441235	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs910211860		P-0064364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	83	568	0	ENST00000460680.1:c.535C>T	p.Arg179Trp	p.R179W	ENST00000460680	NM_004656.3	179	Cgg/Tgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29665824	29665824	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0064364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	30	281	0	ENST00000358273.4:c.6921+1G>T		p.X2307_splice	ENST00000358273	NM_001042492.2	2307																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27092731	27092731	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs141432631		P-0064364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	46	421	0	ENST00000324856.7:c.2752A>G	p.Met918Val	p.M918V	ENST00000324856	NM_006015.4	918	Atg/Gtg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858557	57858557	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	92	561	0	ENST00000228682.2:c.295A>T	p.Ile99Phe	p.I99F	ENST00000228682	NM_005269.2	99	Atc/Ttc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30133225	30133225	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	86	533	1	ENST00000263025.4:c.273C>G	p.Ile91Met	p.I91M	ENST00000263025	NM_002746.2	91	atC/atG																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288744	15288744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	44	407	0	ENST00000263388.2:c.3995C>T	p.Pro1332Leu	p.P1332L	ENST00000263388	NM_000435.2	1332	cCg/cTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47158201	47158201	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	33	317	0	ENST00000409792.3:c.4498G>C	p.Glu1500Gln	p.E1500Q	ENST00000409792	NM_014159.6	1500	Gag/Cag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187519154	187519154	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	34	430	0	ENST00000441802.2:c.12229C>T	p.Gln4077Ter	p.Q4077*	ENST00000441802	NM_005245.3	4077	Cag/Tag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864702	68864702	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064364-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	41	393	0	ENST00000288368.4:c.73G>T	p.Val25Leu	p.V25L	ENST00000288368	NM_024870.2	25	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0064385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	203	404	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913294		P-0064385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	17	318	0	ENST00000371953.3:c.518G>C	p.Arg173Pro	p.R173P	ENST00000371953	NM_000314.4	173	cGc/cCc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262447	16262635	+	inframe_deletion	In_Frame_Del	DEL	GATGCCAAAGCTGCCCCCACCCCCACCCCTGCCCCCGTCCCTGTCCCTGTCCCCCTTCCTGCCCCTGCTCCTGCCCCTCATGGTGAGGCCCGTATCCTCACAGTTACCCCCAGTAACCAACTCCAGGGGCTGCCTCTGACCCCTCCTGTGGTGGTGACCCATGGGGTGCAGATTGTGCACTCCAGCGGG	GATGCCAAAGCTGCCCCCACCCCCACCCCTGCCCCCGTCCCTGTCCCTGTCCCCCTTCCTGCCCCTGCTCCTGCCCCTCATGGTGAGGCCCGTATCCTCACAGTTACCCCCAGTAACCAACTCCAGGGGCTGCCTCTGACCCCTCCTGTGGTGGTGACCCATGGGGTGCAGATTGTGCACTCCAGCGGG	-			P-0064385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	155	444	0	ENST00000375759.3:c.9714_9902del	p.Asp3238_Gly3300del	p.D3238_G3300del	ENST00000375759	NM_015001.2	3238	GATGCCAAAGCTGCCCCCACCCCCACCCCTGCCCCCGTCCCTGTCCCTGTCCCCCTTCCTGCCCCTGCTCCTGCCCCTCATGGTGAGGCCCGTATCCTCACAGTTACCCCCAGTAACCAACTCCAGGGGCTGCCTCTGACCCCTCCTGTGGTGGTGACCCATGGGGTGCAGATTGTGCACTCCAGCGGG/-																																																																															
KDM5A	5927	MSKCC	GRCh37	12	420195	420195	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	259	372	0	ENST00000399788.2:c.3072G>T	p.Glu1024Asp	p.E1024D	ENST00000399788	NM_001042603.1	1024	gaG/gaT																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436186	56436186	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0064385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	166	372	0	ENST00000407977.2:c.953-2A>C		p.X318_splice	ENST00000407977		318																																																																																
MALT1	10892	MSKCC	GRCh37	18	56414661	56414661	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0064385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	154	353	0	ENST00000348428.3:c.2062T>G	p.Leu688Val	p.L688V	ENST00000348428	NM_006785.3	688	Tta/Gta																																																																															
TERT	7015	MSKCC	GRCh37	5	1295961	1295961	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0064385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	495	665	0				ENST00000310581	NM_198253.2																																																																																	
FLT4	2324	MSKCC	GRCh37	5	180040044	180040044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	126	531	0	ENST00000261937.6:c.3398G>T	p.Arg1133Met	p.R1133M	ENST00000261937	NM_182925.4	1133	aGg/aTg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0064394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			751	94	488	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591117	67591118	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0064394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	100	490	0	ENST00000274335.5:c.1711_1712del	p.Ile571ProfsTer30	p.I571Pfs*30	ENST00000274335		570	ctTAtc/cttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578483	7578484	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0064394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	252	676	0	ENST00000269305.4:c.446_447insA	p.Thr150HisfsTer31	p.T150Hfs*31	ENST00000269305	NM_001126112.2	149	tcc/tcAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	341250	341250	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371459615		P-0064397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	44	479	0	ENST00000262320.3:c.2234C>T	p.Ala745Val	p.A745V	ENST00000262320	NM_003502.3	745	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0064397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			814	62	677	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0064397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	85	558	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2086862	2086862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	43	585	0	ENST00000349721.2:c.2560C>T	p.His854Tyr	p.H854Y	ENST00000349721	NM_003070.3	854	Cac/Tac																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152860082	152860082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064397-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	37	222	0	ENST00000406277.2:c.346C>T	p.Arg116Trp	p.R116W	ENST00000406277	NM_152274.4	116	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0064398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	286	482	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792314	33792314	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	109	494	0	ENST00000498907.2:c.1007A>G	p.Asp336Gly	p.D336G	ENST00000498907	NM_004364.3	336	gAc/gGc																																																																															
AKT1	207	MSKCC	GRCh37	14	105258937	105258937	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs368797346		P-0064398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	95	397	0	ENST00000349310.3:c.44G>A	p.Arg15Gln	p.R15Q	ENST00000349310	NM_001014432.1	15	cGa/cAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111663	56111663	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs982925395		P-0064398-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	231	484	0	ENST00000399503.3:c.263C>T	p.Ser88Leu	p.S88L	ENST00000399503	NM_005921.1	88	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587782082		P-0064401-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	15	484	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0064401-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	14	457	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
MAX	4149	MSKCC	GRCh37	14	65560442	65560442	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0064401-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	32	424	0	ENST00000358664.4:c.155C>A	p.Ser52Ter	p.S52*	ENST00000358664	NM_002382.4	52	tCa/tAa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50815160	50815160	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0064401-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	27	398	0	ENST00000398568.2:c.1513del	p.Asp505MetfsTer21	p.D505Mfs*21	ENST00000398568	NM_001042412.1	505	Gat/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0064417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	232	374	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602764	10602764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	10	449	0	ENST00000171111.5:c.814C>T	p.Arg272Cys	p.R272C	ENST00000171111	NM_203500.1	272	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	67	200	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0064418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	143	339	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0064418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	256	447	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0064418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	247	299	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245229	46245230	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0064418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	114	468	0	ENST00000334344.6:c.3327dup	p.Gly1110TrpfsTer50	p.G1110Wfs*50	ENST00000334344	NM_152641.2	1108	ggt/ggTt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549250	21549250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			862	75	464	0	ENST00000382592.4:c.3026G>T	p.Ser1009Ile	p.S1009I	ENST00000382592	NM_014572.2	1009	aGc/aTc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715614	30715614	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0064418-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	90	429	0	ENST00000359013.4:c.1347C>G	p.Tyr449Ter	p.Y449*	ENST00000359013	NM_001024847.2	449	taC/taG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0064423-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	8	440	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T	rs730881673		P-0064424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	142	472	0	ENST00000304494.5:c.131dup	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	105	420	0	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																																																															
CASP8	841	MSKCC	GRCh37	2	202131505	202131505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	85	439	0	ENST00000358485.4:c.473C>T	p.Ser158Phe	p.S158F	ENST00000358485	NM_001080125.1	158	tCt/tTt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969327	44969327	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0064424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	66	331	0	ENST00000377967.4:c.4009G>T	p.Glu1337Ter	p.E1337*	ENST00000377967	NM_021140.2	1337	Gag/Tag																																																																															
CASP8	841	MSKCC	GRCh37	2	202131480	202131480	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	82	443	0	ENST00000358485.4:c.448C>T	p.Gln150Ter	p.Q150*	ENST00000358485	NM_001080125.1	150	Cag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32903606	32903606	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	37	254	0	ENST00000380152.3:c.658G>T	p.Val220Leu	p.V220L	ENST00000380152		220	Gta/Tta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0064424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	129	276	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
FH	2271	MSKCC	GRCh37	1	241665765	241665765	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	86	368	0	ENST00000366560.3:c.1214T>C	p.Leu405Ser	p.L405S	ENST00000366560	NM_000143.3	405	tTg/tCg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931771	39931771	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	27	503	0	ENST00000378444.4:c.2828G>T	p.Gly943Val	p.G943V	ENST00000378444	NM_001123385.1	943	gGa/gTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057916	27057916	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	76	502	0	ENST00000324856.7:c.1624C>T	p.Gln542Ter	p.Q542*	ENST00000324856	NM_006015.4	542	Cag/Tag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0064425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	77	304	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577599	7577600	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0064425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	68	315	0	ENST00000269305.4:c.681dup	p.Asp228Ter	p.D228*	ENST00000269305	NM_001126112.2	227	-/T																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984806	11984806	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0064425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	31	315	1	ENST00000353533.5:c.352A>T	p.Lys118Ter	p.K118*	ENST00000353533	NM_003010.3	118	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0064425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	37	278	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175600	112175600	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0064425-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	61	487	0	ENST00000257430.4:c.4312del	p.Thr1438HisfsTer35	p.T1438Hfs*35	ENST00000257430	NM_000038.5	1437	Aaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057520000		P-0064431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	227	511	0	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70339226	70339226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	66	268	0	ENST00000374080.3:c.103G>A	p.Glu35Lys	p.E35K	ENST00000374080		35	Gaa/Aaa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37863251	37863251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	88	474	0	ENST00000269571.5:c.82G>A	p.Gly28Ser	p.G28S	ENST00000269571		28	Ggc/Agc																																																																															
EP300	2033	MSKCC	GRCh37	22	41566442	41566442	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	103	354	0	ENST00000263253.7:c.4319C>G	p.Pro1440Arg	p.P1440R	ENST00000263253	NM_001429.3	1440	cCa/cGa																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041180	29041180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	80	392	0	ENST00000282397.4:c.248G>A	p.Arg83Lys	p.R83K	ENST00000282397	NM_002019.4	83	aGa/aAa																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21344759	21344759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	41	391	0	ENST00000215739.8:c.736C>A	p.Gln246Lys	p.Q246K	ENST00000215739	NM_006767.3	246	Caa/Aaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445791	49445791	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	153	636	0	ENST00000301067.7:c.1675G>T	p.Glu559Ter	p.E559*	ENST00000301067	NM_003482.3	559	Gag/Tag																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562148	21562148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			739	104	575	0	ENST00000382592.4:c.1771G>A	p.Glu591Lys	p.E591K	ENST00000382592	NM_014572.2	591	Gag/Aag																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570392	95570392	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1278843875		P-0064431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	85	348	0	ENST00000343455.3:c.3341C>G	p.Ser1114Cys	p.S1114C	ENST00000343455	NM_177438.2	1114	tCt/tGt																																																																															
BARD1	580	MSKCC	GRCh37	2	215674192	215674192	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	59	354	0	ENST00000260947.4:c.102G>T	p.Trp34Cys	p.W34C	ENST00000260947	NM_000465.2	34	tgG/tgT																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794945	242794945	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	95	573	0	ENST00000334409.5:c.264G>C	p.Gln88His	p.Q88H	ENST00000334409	NM_005018.2	88	caG/caC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917547	178917547	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200619412		P-0064431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	64	369	0	ENST00000263967.3:c.422G>A	p.Arg141Lys	p.R141K	ENST00000263967	NM_006218.2	141	aGa/aAa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721721	176721721	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	104	445	0	ENST00000439151.2:c.7352G>C	p.Arg2451Thr	p.R2451T	ENST00000439151	NM_022455.4	2451	aGa/aCa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432188	49432190	+	frameshift_variant	Frame_Shift_Del	DEL	CCA	CCA	T			P-0064431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	81	574	0	ENST00000301067.7:c.8949_8951delinsA	p.Gly2984GlufsTer5	p.G2984Efs*5	ENST00000301067	NM_003482.3	2983	gcTGGg/gcAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220442	1220442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	40	510	0	ENST00000326873.7:c.535C>T	p.Pro179Ser	p.P179S	ENST00000326873	NM_000455.4	179	Ccg/Tcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0064433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	40	265	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508054	106508054	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	30	368	0	ENST00000359195.3:c.48C>A	p.Asn16Lys	p.N16K	ENST00000359195	NM_002649.2	16	aaC/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0026547-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			428	529	691	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
AR	367	MSKCC	GRCh37	X	66766412	66766412	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200390780		P-0026547-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			322	102	280	0	ENST00000374690.3:c.1424C>T	p.Ala475Val	p.A475V	ENST00000374690	NM_000044.3	475	gCg/gTg																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112760274	112760274	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026547-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			224	32	238	0	ENST00000369452.4:c.943G>C	p.Glu315Gln	p.E315Q	ENST00000369452	NM_007373.3	315	Gag/Cag																																																																															
PRDM1	639	MSKCC	GRCh37	6	106547359	106547359	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026547-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			460	99	525	0	ENST00000369096.4:c.596G>T	p.Trp199Leu	p.W199L	ENST00000369096	NM_001198.3	199	tGg/tTg																																																																															
MET	4233	MSKCC	GRCh37	7	116411866	116411909	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGTCTTTAACAAGCTCTTTCTTTCTCTCTGTTTTAAGATCTGGG	CGTCTTTAACAAGCTCTTTCTTTCTCTCTGTTTTAAGATCTGGG	TGT			P-0026547-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			425	1017	664	2	ENST00000397752.3:c.2888-37_2894delinsTGT		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0050532-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			547	761	423	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268969	55268969	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050532-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			720	976	560	0	ENST00000275493.2:c.3035A>T	p.Asp1012Val	p.D1012V	ENST00000275493	NM_005228.3	1012	gAt/gTt																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63973786	63973786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050532-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			536	58	447	0	ENST00000295900.6:c.1147G>A	p.Asp383Asn	p.D383N	ENST00000295900	NM_000333.3	383	Gat/Aat																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204782	128204782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050532-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			642	47	547	0	ENST00000341105.2:c.659G>A	p.Ser220Asn	p.S220N	ENST00000341105	NM_032638.4	220	aGc/aAc																																																																															
E2F3	1871	MSKCC	GRCh37	6	20490653	20490653	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050532-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			439	37	355	0	ENST00000346618.3:c.1390T>G	p.Cys464Gly	p.C464G	ENST00000346618	NM_001949.4	464	Tgt/Ggt																																																																															
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0060679-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			772	36	571	0	ENST00000257430.4:c.3944C>A	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tAa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982488	25982488	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	35	356	0	ENST00000435504.4:c.802G>C	p.Asp268His	p.D268H	ENST00000435504		268	Gac/Cac																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274900	41274900	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0061962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	67	468	0	ENST00000349496.5:c.1150A>C	p.Thr384Pro	p.T384P	ENST00000349496	NM_001904.3	384	Act/Cct																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238758086		P-0062860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	8	852	1	ENST00000358026.2:c.2729C>T	p.Thr910Met	p.T910M	ENST00000358026	NM_001128849.1	910	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380282	25380282	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886029		P-0062860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	8	421	0	ENST00000256078.4:c.176C>T	p.Ala59Val	p.A59V	ENST00000256078	NM_033360.2	59	gCa/gTa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061477	38061477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	121	803	0	ENST00000250448.2:c.512C>T	p.Pro171Leu	p.P171L	ENST00000250448	NM_004496.3	171	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063163-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			585	51	848	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0063163-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			420	10	543	2	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987002	36987002	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063163-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			329	44	586	0	ENST00000354822.5:c.687C>G	p.His229Gln	p.H229Q	ENST00000354822	NM_001079668.2	229	caC/caG																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729094	66729099	+	inframe_deletion	In_Frame_Del	DEL	TGGAGA	TGGAGA	-			P-0063163-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			478	56	588	0	ENST00000307102.5:c.303_308del	p.Glu102_Ile103del	p.E102_I103del	ENST00000307102	NM_002755.3	101	cTGGAGAtc/ctc																																																																															
ATM	472	MSKCC	GRCh37	11	108188122	108188207	+	frameshift_variant	Frame_Shift_Del	DEL	GCCATATTCTTTCCGTCTATTTAAAAGGATTGGATTATGAAAATAAAGACTGGTGTCCTGAACTAGAAGAACTTCATTACCAAGCA	GCCATATTCTTTCCGTCTATTTAAAAGGATTGGATTATGAAAATAAAGACTGGTGTCCTGAACTAGAAGAACTTCATTACCAAGCA	-			P-0063163-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			406	50	380	1	ENST00000278616.4:c.6223_6308del	p.His2075MetfsTer23	p.H2075Mfs*23	ENST00000278616	NM_000051.3	2074	tGCCATATTCTTTCCGTCTATTTAAAAGGATTGGATTATGAAAATAAAGACTGGTGTCCTGAACTAGAAGAACTTCATTACCAAGCA/t																																																																															
BCL10	8915	MSKCC	GRCh37	1	85742005	85742005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063163-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			383	32	521	0	ENST00000370580.1:c.31G>A	p.Glu11Lys	p.E11K	ENST00000370580	NM_003921.4	11	Gag/Aag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374477	118374477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063163-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			611	107	851	0	ENST00000534358.1:c.7870G>A	p.Ala2624Thr	p.A2624T	ENST00000534358	NM_005933.3	2624	Gcc/Acc																																																																															
REST	5978	MSKCC	GRCh37	4	57796723	57796723	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063163-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			545	29	678	0	ENST00000309042.7:c.1699G>C	p.Glu567Gln	p.E567Q	ENST00000309042	NM_005612.4	567	Gag/Cag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157222568	157222568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063163-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			595	43	789	0	ENST00000346085.5:c.1835C>T	p.Pro612Leu	p.P612L	ENST00000346085	NM_020732.3	612	cCa/cTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873937	151873937	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1475341096		P-0063163-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			520	36	624	0	ENST00000262189.6:c.8601G>C	p.Lys2867Asn	p.K2867N	ENST00000262189	NM_170606.2	2867	aaG/aaC																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636843	8637078	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCTGAAATAAAAAATAAACATCACAGTTAAATTGAAAACTGAAATACAGACTATTATCCTACTACCGCTGCTCTCCCCACCATCCTCAACCACACCGCCATCAAGACATACATTTTTACAATGCACTATGGGATTACAAAATTAGAAAAGCATCTTTTACTTTTGAGGGTAGTTTAAAGGGGAAGGACATAACTTTCTGGTTAAGTTATCTATTAGTGCTTTTATTGCTGAAATC	TGCTGAAATAAAAAATAAACATCACAGTTAAATTGAAAACTGAAATACAGACTATTATCCTACTACCGCTGCTCTCCCCACCATCCTCAACCACACCGCCATCAAGACATACATTTTTACAATGCACTATGGGATTACAAAATTAGAAAAGCATCTTTTACTTTTGAGGGTAGTTTAAAGGGGAAGGACATAACTTTCTGGTTAAGTTATCTATTAGTGCTTTTATTGCTGAAATC	-			P-0063163-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			417	25	485	0	ENST00000356435.5:c.65-234_66del		p.X22_splice	ENST00000356435		22																																																																																
CUL3	8452	MSKCC	GRCh37	2	225338975	225338976	+	frameshift_variant	Frame_Shift_Ins	INS	GT	GT	ACTTTGC			P-0063163-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	48	402	0	ENST00000264414.4:c.2293_2294delinsGCAAAGT	p.Thr765AlafsTer5	p.T765Afs*5	ENST00000264414	NM_003590.4	765	ACa/GCAAAGTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1177782647		P-0063164-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			621	161	593	1	ENST00000326873.7:c.842dup	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0063164-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			670	83	603	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0063164-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	81	294	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602301	10602301	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063164-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			636	148	584	0	ENST00000171111.5:c.1277A>G	p.Tyr426Cys	p.Y426C	ENST00000171111	NM_203500.1	426	tAt/tGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115740	8115740	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063164-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			632	56	486	0	ENST00000346208.3:c.1086G>T	p.Gln362His	p.Q362H	ENST00000346208		362	caG/caT																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230492996	230492996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063164-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			748	123	470	0	ENST00000525115.1:c.196C>T	p.Leu66Phe	p.L66F	ENST00000525115		66	Ctc/Ttc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396576	30396576	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063164-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			541	62	429	0	ENST00000331968.5:c.143del	p.Gly48AlafsTer10	p.G48Afs*10	ENST00000331968	NM_002742.2	48	gGc/gc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149511637	149511637	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063164-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			442	127	440	0	ENST00000261799.4:c.1148T>C	p.Leu383Pro	p.L383P	ENST00000261799	NM_002609.3	383	cTg/cCg																																																																															
PHF6	84295	MSKCC	GRCh37	X	133551227	133551227	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063164-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			385	23	297	0	ENST00000332070.3:c.863C>G	p.Ala288Gly	p.A288G	ENST00000332070	NM_032458.2	288	gCt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0063247-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			99	439	529	2	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
GAB2	9846	MSKCC	GRCh37	11	77931482	77931483	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0063247-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			564	70	548	0	ENST00000361507.4:c.1769_1770del	p.Pro590ArgfsTer16	p.P590Rfs*16	ENST00000361507	NM_080491.2	590	cCA/c																																																																															
TERT	7015	MSKCC	GRCh37	5	1293818	1293818	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0063247-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			424	364	822	0	ENST00000310581.5:c.1183G>T	p.Glu395Ter	p.E395*	ENST00000310581	NM_198253.2	395	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0063308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	24	253	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852415	63852415	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778543737		P-0063308-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	49	626	0	ENST00000279873.7:c.3193G>A	p.Gly1065Arg	p.G1065R	ENST00000279873	NM_032199.2	1065	Gga/Aga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0063875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			363	54	341	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913286		P-0063875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			172	23	214	0	ENST00000263967.3:c.1636C>G	p.Gln546Glu	p.Q546E	ENST00000263967	NM_006218.2	546	Cag/Gag																																																																															
CDC73	79577	MSKCC	GRCh37	1	193099331	193099331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			227	34	278	0	ENST00000367435.3:c.265C>T	p.Pro89Ser	p.P89S	ENST00000367435	NM_024529.4	89	Cct/Tct																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115941	8115942	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0063875-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			522	70	501	0	ENST00000346208.3:c.1290dup	p.Gly431TrpfsTer76	p.G431Wfs*76	ENST00000346208		429	-/T																																																																															
APC	324	MSKCC	GRCh37	5	112154942	112154942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779780		P-0063876-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			275	144	663	0	ENST00000257430.4:c.1213C>T	p.Arg405Ter	p.R405*	ENST00000257430	NM_000038.5	405	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0063876-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			310	185	847	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578552	7578552	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0063876-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			270	116	709	1	ENST00000269305.4:c.378C>A	p.Tyr126Ter	p.Y126*	ENST00000269305	NM_001126112.2	126	taC/taA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0063876-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			235	122	392	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295509	1295509	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0063876-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			700	43	1069	0				ENST00000310581	NM_198253.2																																																																																	
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0063877-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			275	59	256	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21619927	21619927	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0063877-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			587	114	477	0	ENST00000382592.4:c.239T>A	p.Ile80Asn	p.I80N	ENST00000382592	NM_014572.2	80	aTc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0063877-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			523	126	495	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591882	48591882	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0063877-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			411	108	494	0	ENST00000342988.3:c.1045A>C	p.Thr349Pro	p.T349P	ENST00000342988	NM_005359.5	349	Act/Cct																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971187	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0063877-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	86	427	0	ENST00000304494.5:c.171_172del	p.Arg58SerfsTer61	p.R58Sfs*61	ENST00000304494	NM_000077.4	57	gcCCga/gcga																																																																															
AKT3	10000	MSKCC	GRCh37	1	243859016	243859016	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs397514606		P-0063884-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			68	142	153	0	ENST00000263826.5:c.49G>A	p.Glu17Lys	p.E17K	ENST00000263826	NM_005465.4	17	Gaa/Aaa																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379748	17379748	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202199976		P-0063884-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			633	191	770	0	ENST00000359435.4:c.133G>A	p.Val45Met	p.V45M	ENST00000359435	NM_001033549.1	45	Gtg/Atg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295773	212295773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1299031105		P-0064024-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	97	459	2	ENST00000342788.4:c.2540G>A	p.Arg847His	p.R847H	ENST00000342788	NM_005235.2	847	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064024-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	102	362	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679910	33679910	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064024-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	156	640	0	ENST00000308377.4:c.2171G>C	p.Arg724Thr	p.R724T	ENST00000308377	NM_152270.3	724	aGa/aCa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575197	48575197	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064024-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	136	317	0	ENST00000342988.3:c.391T>A	p.Tyr131Asn	p.Y131N	ENST00000342988	NM_005359.5	131	Tat/Aat																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735553	40735553	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064024-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	111	643	0	ENST00000373198.4:c.3320C>A	p.Ala1107Asp	p.A1107D	ENST00000373198	NM_133170.3	1107	gCt/gAt																																																																															
ATR	545	MSKCC	GRCh37	3	142242909	142242909	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064024-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	142	538	0	ENST00000350721.4:c.4078G>T	p.Glu1360Ter	p.E1360*	ENST00000350721	NM_001184.3	1360	Gaa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0064050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	85	377	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
NF1	4763	MSKCC	GRCh37	17	29557283	29557283	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	35	274	0	ENST00000358273.4:c.2996T>C	p.Val999Ala	p.V999A	ENST00000358273	NM_001042492.2	999	gTt/gCt																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63983298	63983298	+	intron_variant	Intron	SNP	A	A	G	rs554990824		P-0064050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	32	265	0	ENST00000295900.6:c.2661+1139A>G		p.*887*	ENST00000295900	NM_000333.3																																																																																	
RBM10	8241	MSKCC	GRCh37	X	47039656	47039656	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0064050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	108	416	0	ENST00000329236.7:c.874del	p.Leu292SerfsTer115	p.L292Sfs*115	ENST00000329236	NM_001204466.1	292	Ctc/tc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs193920894		P-0064051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	191	593	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
POLE	5426	MSKCC	GRCh37	12	133225923	133225923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	100	643	0	ENST00000320574.5:c.3974G>A	p.Ser1325Asn	p.S1325N	ENST00000320574	NM_006231.2	1325	aGc/aAc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918159	50918159	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0064051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	83	734	0	ENST00000440232.2:c.2476T>G	p.Cys826Gly	p.C826G	ENST00000440232	NM_002691.3	826	Tgc/Ggc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0064147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	50	617	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0064147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	13	326	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473723	67473723	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223740		P-0064149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	13	471	0	ENST00000327367.4:c.803G>A	p.Arg268His	p.R268H	ENST00000327367	NM_005902.3	268	cGc/cAc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89845356	89845356	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	39	513	0	ENST00000389301.3:c.1771C>T	p.Arg591Ter	p.R591*	ENST00000389301	NM_000135.2	591	Cga/Tga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045488	47045488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			45	30	287	0	ENST00000329236.7:c.2221G>T	p.Ala741Ser	p.A741S	ENST00000329236	NM_001204466.1	741	Gct/Tct																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134535	2134535	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778925833		P-0064149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	40	677	0	ENST00000219476.3:c.4312C>T	p.Arg1438Trp	p.R1438W	ENST00000219476	NM_000548.3	1438	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	33	265	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KLF5	688	MSKCC	GRCh37	13	73637991	73637991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	29	343	0	ENST00000377687.4:c.1165C>A	p.His389Asn	p.H389N	ENST00000377687	NM_001730.3	389	Cat/Aat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593523	48593535	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTTCATAAGAT	CTGTTCATAAGAT	-			P-0064149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	30	333	0	ENST00000342988.3:c.1276_1288del	p.Val426ThrfsTer6	p.V426Tfs*6	ENST00000342988	NM_005359.5	425	gCTGTTCATAAGATc/gc																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045705	26045705	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs745690555		P-0064149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	40	622	0	ENST00000540144.1:c.67A>G	p.Thr23Ala	p.T23A	ENST00000540144	NM_003531.2	23	Act/Gct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	51	90	2	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	92	261	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	441	560	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	25	444	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
MAX	4149	MSKCC	GRCh37	14	65560514	65560514	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	118	325	0	ENST00000358664.4:c.83A>G	p.His28Arg	p.H28R	ENST00000358664	NM_002382.4	28	cAt/cGt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	124	474	7	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
ROS1	6098	MSKCC	GRCh37	6	117700232	117700232	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146533107		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	115	279	0	ENST00000368508.3:c.2587C>T	p.Arg863Trp	p.R863W	ENST00000368508	NM_002944.2	863	Cgg/Tgg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	155	338	4	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216358	2216358	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370276763		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	179	519	1	ENST00000398665.3:c.2002G>A	p.Ala668Thr	p.A668T	ENST00000398665	NM_032482.2	668	Gcc/Acc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953229	81953229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	69	373	0	ENST00000359376.3:c.2195G>A	p.Arg732His	p.R732H	ENST00000359376	NM_002661.3	732	cGc/cAc																																																																															
CDK6	1021	MSKCC	GRCh37	7	92247520	92247520	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs902137115		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	109	375	0	ENST00000265734.4:c.700G>A	p.Val234Met	p.V234M	ENST00000265734	NM_001259.6	234	Gtg/Atg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681061	117681061	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749977900		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	47	373	0	ENST00000368508.3:c.3559G>A	p.Val1187Ile	p.V1187I	ENST00000368508	NM_002944.2	1187	Gtt/Att																																																																															
JAK3	3718	MSKCC	GRCh37	19	17951085	17951085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	113	287	1	ENST00000458235.1:c.1208G>A	p.Arg403His	p.R403H	ENST00000458235	NM_000215.3	403	cGc/cAc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265353	152265353	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188957694		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	136	404	0	ENST00000206249.3:c.806G>A	p.Arg269His	p.R269H	ENST00000206249	NM_000125.3	269	cGc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42003059	42003059	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	141	397	0	ENST00000219905.7:c.2596C>T	p.Arg866Ter	p.R866*	ENST00000219905	NM_001164273.1	866	Cga/Tga																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716329	52716329	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863225094		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	26	448	0	ENST00000322088.6:c.773G>A	p.Arg258His	p.R258H	ENST00000322088	NM_014225.5	258	cGc/cAc																																																																															
MET	4233	MSKCC	GRCh37	7	116340177	116340177	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200074800		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	172	377	0	ENST00000397752.3:c.1039G>A	p.Ala347Thr	p.A347T	ENST00000397752	NM_000245.2	347	Gca/Aca																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347432	89347432	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144003224		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	199	505	0	ENST00000301030.4:c.5518G>A	p.Ala1840Thr	p.A1840T	ENST00000301030	NM_001256183.1	1840	Gcg/Acg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	226	658	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2111996	2111996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374936223		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	195	477	1	ENST00000219476.3:c.1244C>T	p.Ala415Val	p.A415V	ENST00000219476	NM_000548.3	415	gCg/gTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17948824	17948824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747854515		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	38	481	0	ENST00000458235.1:c.1618C>T	p.Arg540Cys	p.R540C	ENST00000458235	NM_000215.3	540	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427951	49427951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	159	400	0	ENST00000301067.7:c.10639C>T	p.Arg3547Cys	p.R3547C	ENST00000301067	NM_003482.3	3547	Cgc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821381	72821382	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	72	394	0	ENST00000268489.5:c.10793dup	p.Pro3599SerfsTer67	p.P3599Sfs*67	ENST00000268489	NM_006885.3	3598	cct/ccCt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425056	49425056	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs562043836		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	36	531	0	ENST00000301067.7:c.13432C>T	p.Arg4478Trp	p.R4478W	ENST00000301067	NM_003482.3	4478	Cgg/Tgg																																																																															
MSI1	4440	MSKCC	GRCh37	12	120795696	120795696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	104	272	0	ENST00000257552.2:c.457G>A	p.Gly153Arg	p.G153R	ENST00000257552	NM_002442.3	153	Ggg/Agg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40858194	40858194	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs905112048		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	98	309	0	ENST00000428826.2:c.1670G>A	p.Arg557His	p.R557H	ENST00000428826		557	cGt/cAt																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540214	23540219	+	inframe_deletion	In_Frame_Del	DEL	CTCTGG	CTCTGG	-			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	99	543	0	ENST00000380871.4:c.184_189del	p.Pro62_Glu63del	p.P62_E63del	ENST00000380871	NM_006167.3	62	CCAGAG/-																																																																															
CARD11	84433	MSKCC	GRCh37	7	2983971	2983971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	170	443	0	ENST00000396946.4:c.559C>T	p.Arg187Trp	p.R187W	ENST00000396946	NM_032415.4	187	Cgg/Tgg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434581	99434581	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1461059080		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	157	431	1	ENST00000268035.6:c.668C>T	p.Ala223Val	p.A223V	ENST00000268035	NM_000875.3	223	gCg/gTg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022435	12022435	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149660037		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	255	572	0	ENST00000396373.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000396373	NM_001987.4	181	Cgc/Tgc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085677	16085677	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779959007		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	135	391	0	ENST00000281043.3:c.853C>T	p.Arg285Trp	p.R285W	ENST00000281043	NM_005378.4	285	Cgg/Tgg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964205	28964206	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	107	332	0	ENST00000282397.4:c.1696dup	p.Met566AsnfsTer15	p.M566Nfs*15	ENST00000282397	NM_002019.4	566	atg/aAtg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53240974	53240974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs907851319		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	26	179	0	ENST00000375401.3:c.1237G>A	p.Val413Met	p.V413M	ENST00000375401	NM_004187.3	413	Gtg/Atg																																																																															
RAC2	5880	MSKCC	GRCh37	22	37627355	37627355	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs910521882		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	186	464	0	ENST00000249071.6:c.364G>A	p.Asp122Asn	p.D122N	ENST00000249071	NM_002872.4	122	Gac/Aac																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434667	99434667	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375391097		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	43	475	0	ENST00000268035.6:c.754C>T	p.Arg252Cys	p.R252C	ENST00000268035	NM_000875.3	252	Cgc/Tgc																																																																															
TEK	7010	MSKCC	GRCh37	9	27206761	27206761	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376225163		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	133	292	0	ENST00000380036.4:c.2546G>A	p.Arg849Gln	p.R849Q	ENST00000380036	NM_000459.3	849	cGg/cAg																																																																															
POLE	5426	MSKCC	GRCh37	12	133249223	133249223	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766276875		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	146	415	0	ENST00000320574.5:c.1676G>A	p.Arg559Gln	p.R559Q	ENST00000320574	NM_006231.2	559	cGg/cAg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324506	31324507	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			661	211	653	0	ENST00000412585.2:c.301_302del	p.Ser101ProfsTer37	p.S101Pfs*37	ENST00000412585	NM_005514.6	101	AGc/c																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508205	106508205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	372	458	0	ENST00000359195.3:c.199G>A	p.Val67Met	p.V67M	ENST00000359195	NM_002649.2	67	Gtg/Atg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602698	10602698	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145222481		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	212	485	1	ENST00000171111.5:c.880G>A	p.Asp294Asn	p.D294N	ENST00000171111	NM_203500.1	294	Gac/Aac																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120479976	120479976	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782503548		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	136	476	0	ENST00000256646.2:c.3451G>A	p.Asp1151Asn	p.D1151N	ENST00000256646	NM_024408.3	1151	Gat/Aat																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	229	402	3	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199609	16199609	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751080105		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	162	393	0	ENST00000375759.3:c.382C>T	p.Arg128Cys	p.R128C	ENST00000375759	NM_015001.2	128	Cgt/Tgt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193121573	193121573	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	132	290	0	ENST00000367435.3:c.971C>T	p.Thr324Met	p.T324M	ENST00000367435	NM_024529.4	324	aCg/aTg																																																																															
SUFU	51684	MSKCC	GRCh37	10	104359288	104359288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	103	364	0	ENST00000369902.3:c.1009C>T	p.His337Tyr	p.H337Y	ENST00000369902	NM_016169.3	337	Cac/Tac																																																																															
WT1	7490	MSKCC	GRCh37	11	32450142	32450142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767419243		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	169	462	0	ENST00000332351.3:c.670G>A	p.Gly224Arg	p.G224R	ENST00000332351	NM_024426.4	224	Ggg/Agg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998346	100998346	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	82	351	0	ENST00000325455.5:c.1456A>G	p.Ser486Gly	p.S486G	ENST00000325455	NM_001202474.3	486	Agc/Ggc																																																																															
ATM	472	MSKCC	GRCh37	11	108128307	108128307	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	123	246	0	ENST00000278616.4:c.2350A>G	p.Thr784Ala	p.T784A	ENST00000278616	NM_000051.3	784	Aca/Gca																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133967	41133967	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139398811		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	188	552	0	ENST00000379561.5:c.1661G>A	p.Arg554His	p.R554H	ENST00000379561	NM_002015.3	554	cGc/cAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29585395	29585395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138227618		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	103	309	0	ENST00000358273.4:c.4207G>A	p.Gly1403Ser	p.G1403S	ENST00000358273	NM_001042492.2	1403	Ggt/Agt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244459	41244459	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	158	412	0	ENST00000357654.3:c.3089A>G	p.Asn1030Ser	p.N1030S	ENST00000357654	NM_007294.3	1030	aAc/aGc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11107036	11107038	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	13	455	0	ENST00000344626.4:c.1746_1748del	p.Lys588del	p.K588del	ENST00000344626	NM_003072.3	581	AAG/-																																																																															
CALR	811	MSKCC	GRCh37	19	13054705	13054705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	61	472	0	ENST00000316448.5:c.1232G>A	p.Gly411Asp	p.G411D	ENST00000316448	NM_004343.3	411	gGc/gAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298755	15298755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	124	403	0	ENST00000263388.2:c.1543C>T	p.Pro515Ser	p.P515S	ENST00000263388	NM_000435.2	515	Ccc/Tcc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546656	9546656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	42	460	0	ENST00000353224.5:c.1366G>A	p.Gly456Arg	p.G456R	ENST00000353224	NM_177990.2	456	Ggg/Agg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629144	187629144	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	154	420	0	ENST00000441802.2:c.1838A>T	p.Asp613Val	p.D613V	ENST00000441802	NM_005245.3	613	gAt/gTt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289209	33289209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	60	478	0	ENST00000374542.5:c.343C>T	p.Arg115Trp	p.R115W	ENST00000374542	NM_001141970.1	115	Cgg/Tgg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959066	2959066	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772566311		P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	112	443	0	ENST00000396946.4:c.2450C>T	p.Ala817Val	p.A817V	ENST00000396946	NM_032415.4	817	gCg/gTg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935601	13935601	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	188	394	0	ENST00000405192.2:c.1255A>G	p.Ile419Val	p.I419V	ENST00000405192	NM_001163147.1	419	Atc/Gtc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139404282	139404282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	44	523	0	ENST00000277541.6:c.2872G>A	p.Ala958Thr	p.A958T	ENST00000277541	NM_017617.3	958	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660548		P-0064151-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	145	515	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99460079	99460079	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064151-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	36	388	0	ENST00000268035.6:c.2175C>A	p.Phe725Leu	p.F725L	ENST00000268035	NM_000875.3	725	ttC/ttA																																																																															
NF1	4763	MSKCC	GRCh37	17	29556236	29556240	+	frameshift_variant	Frame_Shift_Del	DEL	GTCCA	GTCCA	-			P-0064151-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	108	370	0	ENST00000358273.4:c.2606_2610del	p.Pro869GlnfsTer2	p.P869Qfs*2	ENST00000358273	NM_001042492.2	868	gGTCCA/g																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87475589	87476040	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATGATCTCTCCACTAAGGGGGAAGAAAGAAAGTGAGAAAGAAAGAAAACAGCTCAGAGCCCTTAACCCTGGGTTGTGGCTATTTTTCTCATAGACAGGCTGCTCTCTCTTATCTGATTGGAGCCTCCGTGTTCTCTGAATAGGAAATAAATCTCTACACAAAAATCCAAGGGTTAGTTTCCAGGTGTTTGATAGGAAGCTTTCATCCCAAGTGGTTTGTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTGTCGGGGGGAGTTTGTTGCATTATTTGACCAAGGACAGTGTTGACCACCTCCGGTTTCTACTTCTCTTTCGAAGTTTATTTTATGTTTTGTTGTGGTTTTCAGATTTCTCATGGTTTGGATTTGGGAAAGTAAAATCAAGACAAGGTGTTGGTAAGTAGTTAACTCACTCCTTCTTTGGATAAGTAATG	ATGATCTCTCCACTAAGGGGGAAGAAAGAAAGTGAGAAAGAAAGAAAACAGCTCAGAGCCCTTAACCCTGGGTTGTGGCTATTTTTCTCATAGACAGGCTGCTCTCTCTTATCTGATTGGAGCCTCCGTGTTCTCTGAATAGGAAATAAATCTCTACACAAAAATCCAAGGGTTAGTTTCCAGGTGTTTGATAGGAAGCTTTCATCCCAAGTGGTTTGTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTGTCGGGGGGAGTTTGTTGCATTATTTGACCAAGGACAGTGTTGACCACCTCCGGTTTCTACTTCTCTTTCGAAGTTTATTTTATGTTTTGTTGTGGTTTTCAGATTTCTCATGGTTTGGATTTGGGAAAGTAAAATCAAGACAAGGTGTTGGTAAGTAGTTAACTCACTCCTTCTTTGGATAAGTAATG	-			P-0064151-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			2	59	12	0	ENST00000277120.3:c.1397-365_1444+39del		p.X466_splice	ENST00000277120		466																																																																																
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0064158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	98	715	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0064158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	215	684	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337696	73337696	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	16	158	0	ENST00000377767.4:c.2020G>T	p.Val674Phe	p.V674F	ENST00000377767	NM_014953.3	674	Gtt/Ttt																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731679	47731679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	66	604	0	ENST00000449228.1:c.113G>A	p.Arg38His	p.R38H	ENST00000449228	NM_001127240.2	38	cGc/cAc																																																																															
HGF	3082	MSKCC	GRCh37	7	81374333	81374333	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	24	162	0	ENST00000222390.5:c.729C>A	p.His243Gln	p.H243Q	ENST00000222390	NM_000601.4	243	caC/caA																																																																															
STK11	6794	MSKCC	GRCh37	19	1221992	1221992	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	137	500	0	ENST00000326873.7:c.907A>T	p.Ile303Phe	p.I303F	ENST00000326873	NM_000455.4	303	Atc/Ttc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100889	27100889	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201172639		P-0064158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	65	552	0	ENST00000324856.7:c.4171G>A	p.Val1391Met	p.V1391M	ENST00000324856	NM_006015.4	1391	Gtg/Atg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150935462	150935462	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	123	391	0	ENST00000271640.5:c.3304C>G	p.Leu1102Val	p.L1102V	ENST00000271640	NM_001145415.1	1102	Ctg/Gtg																																																																															
PGR	5241	MSKCC	GRCh37	11	100909954	100909954	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0064158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	36	145	0	ENST00000325455.5:c.2695del	p.Arg899GlyfsTer3	p.R899Gfs*3	ENST00000325455	NM_001202474.3	899	Cgg/gg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121435317	121435317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	163	674	0	ENST00000257555.6:c.1350C>A	p.Asn450Lys	p.N450K	ENST00000257555		450	aaC/aaA																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281201	49281201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	21	226	0	ENST00000282018.3:c.248C>T	p.Ser83Leu	p.S83L	ENST00000282018	NM_020377.2	83	tCa/tTa																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281248	49281248	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	18	263	0	ENST00000282018.3:c.295C>A	p.Leu99Ile	p.L99I	ENST00000282018	NM_020377.2	99	Ctt/Att																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641056	23641056	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	112	371	0	ENST00000261584.4:c.2419C>G	p.Pro807Ala	p.P807A	ENST00000261584	NM_024675.3	807	Cca/Gca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216703	36216703	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	97	568	0	ENST00000222270.7:c.3869G>T	p.Arg1290Leu	p.R1290L	ENST00000222270	NM_014727.1	1290	cGc/cTc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560884	9560884	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776471547		P-0064158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	104	544	0	ENST00000353224.5:c.898G>A	p.Gly300Arg	p.G300R	ENST00000353224	NM_177990.2	300	Gga/Aga																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31379506	31379506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	48	215	0	ENST00000328111.2:c.913G>T	p.Ala305Ser	p.A305S	ENST00000328111	NM_006892.3	305	Gct/Tct																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502367	186502367	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	15	252	0	ENST00000323963.5:c.90G>C	p.Glu30Asp	p.E30D	ENST00000323963		30	gaG/gaC																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31421442	31421442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			81	112	148	0	ENST00000344624.3:c.3462G>T	p.Met1154Ile	p.M1154I	ENST00000344624		1154	atG/atT																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513460	149513460	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	38	642	0	ENST00000261799.4:c.743C>A	p.Thr248Lys	p.T248K	ENST00000261799	NM_002609.3	248	aCa/aAa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178647	32178647	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs775055374		P-0064158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	128	528	0	ENST00000375023.3:c.2747G>T	p.Cys916Phe	p.C916F	ENST00000375023	NM_004557.3	916	tGc/tTc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157517413	157517413	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064158-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	71	330	0	ENST00000346085.5:c.3977G>T	p.Arg1326Leu	p.R1326L	ENST00000346085	NM_020732.3	1326	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	38	490	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0064169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	65	339	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460566	8460566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	36	467	0	ENST00000356435.5:c.3720G>T	p.Met1240Ile	p.M1240I	ENST00000356435		1240	atG/atT																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933200	39933200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	25	329	0	ENST00000378444.4:c.1399G>T	p.Val467Phe	p.V467F	ENST00000378444	NM_001123385.1	467	Gtt/Ttt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038526	47038526	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	36	136	0	ENST00000329236.7:c.457C>T	p.Arg153Ter	p.R153*	ENST00000329236	NM_001204466.1	153	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520008		P-0064178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	47	305	0	ENST00000269305.4:c.613T>G	p.Tyr205Asp	p.Y205D	ENST00000269305	NM_001126112.2	205	Tat/Gat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591931	48591931	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	20	261	0	ENST00000342988.3:c.1094G>T	p.Gly365Val	p.G365V	ENST00000342988	NM_005359.5	365	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	30	185	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119642328	119642328	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0064178-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	39	150	0	ENST00000316626.5:c.369A>C	p.Lys123Asn	p.K123N	ENST00000316626		123	aaA/aaC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241677	55241677	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs727504256		P-0064183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	10397	484	4	ENST00000275493.2:c.2125G>A	p.Glu709Lys	p.E709K	ENST00000275493	NM_005228.3	709	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0064183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	8662	404	6	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0064183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	249	496	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37872674	37872674	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			940	105	656	1	ENST00000269571.5:c.1634G>T	p.Arg545Leu	p.R545L	ENST00000269571		545	cGa/cTa																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230459233	230459233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	115	494	0	ENST00000525115.1:c.1306C>A	p.Gln436Lys	p.Q436K	ENST00000525115		436	Cag/Aag																																																																															
WT1	7490	MSKCC	GRCh37	11	32456404	32456404	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	122	442	0	ENST00000332351.3:c.488A>T	p.His163Leu	p.H163L	ENST00000332351	NM_024426.4	163	cAc/cTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118369241	118369241	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0064224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	154	342	0	ENST00000534358.1:c.5959G>A	p.Glu1987Lys	p.E1987K	ENST00000534358	NM_005933.3	1987	Gaa/Aaa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245349	46245349	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0064224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	308	470	0	ENST00000334344.6:c.3443T>G	p.Leu1148Ter	p.L1148*	ENST00000334344	NM_152641.2	1148	tTa/tGa																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873760	35873760	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	116	425	0	ENST00000216797.5:c.91G>C	p.Asp31His	p.D31H	ENST00000216797	NM_020529.2	31	Gac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579198	7579893	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGACAGGAAGCCAAAGGGTGAAGAGGAATCCCAAAGTTCCAAACAAAAGAAATGCAGGGGGATACGGCCAGGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAGAAGCCCAGACGGAAACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGGACAGAAGATGACAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTGCAGGGGCCACGGGGGGAGCAGCCTCTGGCATTCTGGGAGCTTCATCTGGACCTGGGTCTTCAGTGAACCATTGTTCAATATCGTCCGGGGACAGCATCAAATCATCCATTGCTTGGGACGGCAAGGGGGACTGTAGATGGGTGAAAAGAGCAGTCAGAGGACCAGGTCCTCAGCCCCCCAGCCCCCCAGCCCTCCAGGTCCCCAGCCCTCCAGGTCCCCAGCCCAACCCTTGTCCTTACCAGAACGTTGTTTTCAGGAAGTCTGAAAGACAAGAGCAGAAAGTCAGTCCCATGGAATTTTCGCTTCCCACAGGTCTCTGCTAGGGGGCTGGGGTTGGGGTGGGGGTGGTGGGCCTGCCCTTCCAATGGATCCACTCACAGTTTCCATAGGTCTGAAAATGTTTCCTGACTCAGAGGGGGCTCGACGCTAGGAT	CTGACAGGAAGCCAAAGGGTGAAGAGGAATCCCAAAGTTCCAAACAAAAGAAATGCAGGGGGATACGGCCAGGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAGAAGCCCAGACGGAAACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGGACAGAAGATGACAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTGCAGGGGCCACGGGGGGAGCAGCCTCTGGCATTCTGGGAGCTTCATCTGGACCTGGGTCTTCAGTGAACCATTGTTCAATATCGTCCGGGGACAGCATCAAATCATCCATTGCTTGGGACGGCAAGGGGGACTGTAGATGGGTGAAAAGAGCAGTCAGAGGACCAGGTCCTCAGCCCCCCAGCCCCCCAGCCCTCCAGGTCCCCAGCCCTCCAGGTCCCCAGCCCAACCCTTGTCCTTACCAGAACGTTGTTTTCAGGAAGTCTGAAAGACAAGAGCAGAAAGTCAGTCCCATGGAATTTTCGCTTCCCACAGGTCTCTGCTAGGGGGCTGGGGTTGGGGTGGGGGTGGTGGGCCTGCCCTTCCAATGGATCCACTCACAGTTTCCATAGGTCTGAAAATGTTTCCTGACTCAGAGGGGGCTCGACGCTAGGAT	-			P-0064224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			21	66	143	0	ENST00000269305.4:c.20_375+114del		p.X7_splice	ENST00000269305	NM_001126112.2	7																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519816		P-0064224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	171	458	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0064224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	134	363	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112116515	112116515	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0064224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			74	83	257	0	ENST00000257430.4:c.561del	p.Arg187SerfsTer18	p.R187Sfs*18	ENST00000257430	NM_000038.5	187	aGg/ag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508836	106508836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	109	520	1	ENST00000359195.3:c.830G>A	p.Arg277Gln	p.R277Q	ENST00000359195	NM_002649.2	277	cGg/cAg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911679	32911679	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876657678		P-0064244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	104	457	0	ENST00000380152.3:c.3187C>T	p.Gln1063Ter	p.Q1063*	ENST00000380152		1063	Cag/Tag																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150933618	150933618	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0064244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	175	568	0	ENST00000271640.5:c.3080C>G	p.Ser1027Ter	p.S1027*	ENST00000271640	NM_001145415.1	1027	tCa/tGa																																																																															
BLM	641	MSKCC	GRCh37	15	91337549	91337549	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	27	347	0	ENST00000355112.3:c.3172C>A	p.His1058Asn	p.H1058N	ENST00000355112	NM_000057.2	1058	Cac/Aac																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106514799	106515271	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATGTGCTGGAAAGAAAACTACAGTATTAATTCCTTAGCATCACCCTCAGAGCATACTTCTCTACTTGGATTGTGTTGGTGTCTATGTGTTATCCCACATATATTCACATATTTCTGTCCCCTGTTGTAGTATGTGTACATGGTTATGTTGCTCACCTTAAGCCCAATGTATCTTGCCACCTCATATGGTTAGCTCCTCAAAGGCAGGGCCCACCCACATTTCTCCTGCTCTACACCAGAACAAATATATAGAATGCTATGAATAAATGTGTTCTCAGGAAATGTAATAGATAATATTGATGATTTCTGGAACTCACATAACTCTTGTGTACTTTTGACAATTACAGTTATTTCACAACTTAAACAAAAGCTTGAAAACCTGCAGAATTCTCAACTCCCCGAAAGCTTTAGAGTTCCATATGATCCTGGACTGAAAGCAGGAGCGCTGGCAGTAGGTATCACTTGGATGTCTCC	ATGTGCTGGAAAGAAAACTACAGTATTAATTCCTTAGCATCACCCTCAGAGCATACTTCTCTACTTGGATTGTGTTGGTGTCTATGTGTTATCCCACATATATTCACATATTTCTGTCCCCTGTTGTAGTATGTGTACATGGTTATGTTGCTCACCTTAAGCCCAATGTATCTTGCCACCTCATATGGTTAGCTCCTCAAAGGCAGGGCCCACCCACATTTCTCCTGCTCTACACCAGAACAAATATATAGAATGCTATGAATAAATGTGTTCTCAGGAAATGTAATAGATAATATTGATGATTTCTGGAACTCACATAACTCTTGTGTACTTTTGACAATTACAGTTATTTCACAACTTAAACAAAAGCTTGAAAACCTGCAGAATTCTCAACTCCCCGAAAGCTTTAGAGTTCCATATGATCCTGGACTGAAAGCAGGAGCGCTGGCAGTAGGTATCACTTGGATGTCTCC	-			P-0064244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			4	32	8	0	ENST00000359195.3:c.2288-341_2391+28del		p.X763_splice	ENST00000359195	NM_002649.2	763																																																																																
TP53	7157	MSKCC	GRCh37	17	7576926	7576927	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GC	GC	AT			P-0064246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			749	42	567	0	ENST00000269305.4:c.920-1_920delinsAT		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38061228	38061229	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	T			P-0064246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	131	564	0	ENST00000250448.2:c.760_761delinsA	p.Phe254ThrfsTer67	p.F254Tfs*67	ENST00000250448	NM_004496.3	254	TTc/Ac																																																																															
PGR	5241	MSKCC	GRCh37	11	100962545	100962545	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	106	466	0	ENST00000325455.5:c.1852A>T	p.Asn618Tyr	p.N618Y	ENST00000325455	NM_001202474.3	618	Aac/Tac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446849	49446849	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1204392134		P-0064297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	219	870	0	ENST00000301067.7:c.961C>T	p.Arg321Trp	p.R321W	ENST00000301067	NM_003482.3	321	Cgg/Tgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923756	72923756	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771775824		P-0064297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	211	746	0	ENST00000268489.5:c.3322C>T	p.Arg1108Cys	p.R1108C	ENST00000268489	NM_006885.3	1108	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579483	7579492	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTGGCATT	CTCTGGCATT	-			P-0064297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	444	879	0	ENST00000269305.4:c.195_204del	p.Met66LeufsTer54	p.M66Lfs*54	ENST00000269305	NM_001126112.2	65	agAATGCCAGAG/ag																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121262	29121262	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	64	608	0	ENST00000328354.6:c.413C>A	p.Thr138Lys	p.T138K	ENST00000328354	NM_007194.3	138	aCa/aAa																																																																															
KDR	3791	MSKCC	GRCh37	4	55962477	55962477	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064297-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	23	442	0	ENST00000263923.4:c.2647A>T	p.Met883Leu	p.M883L	ENST00000263923	NM_002253.2	883	Atg/Ttg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685269	89685269	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0064316-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			37	37	120	0	ENST00000371953.3:c.165-1G>T		p.X55_splice	ENST00000371953	NM_000314.4	55																																																																																
TP53	7157	MSKCC	GRCh37	17	7573987	7573987	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397516434		P-0064316-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	188	611	0	ENST00000269305.4:c.1040C>T	p.Ala347Val	p.A347V	ENST00000269305	NM_001126112.2	347	gCc/gTc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366149	15366149	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35824241		P-0064316-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	90	680	0	ENST00000263377.2:c.2006G>A	p.Arg669His	p.R669H	ENST00000263377	NM_058243.2	669	cGc/cAc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99189293	99189293	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766300586		P-0064316-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	80	653	0	ENST00000074304.5:c.2549G>A	p.Arg850His	p.R850H	ENST00000074304	NM_001134224.1	850	cGc/cAc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285807	46285807	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0064319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	30	814	0	ENST00000334344.6:c.5075C>G	p.Ser1692Ter	p.S1692*	ENST00000334344	NM_152641.2	1692	tCa/tGa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056181	27056181	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	115	1016	0	ENST00000324856.7:c.1177C>T	p.Gln393Ter	p.Q393*	ENST00000324856	NM_006015.4	393	Cag/Tag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	364577	364577	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754764999		P-0064319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			960	175	1139	2	ENST00000262320.3:c.985G>A	p.Asp329Asn	p.D329N	ENST00000262320	NM_003502.3	329	Gat/Aat																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149439357	149439357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			860	47	1152	0	ENST00000286301.3:c.2038G>A	p.Glu680Lys	p.E680K	ENST00000286301	NM_005211.3	680	Gag/Aag																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149439405	149439405	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			745	48	1016	0	ENST00000286301.3:c.1990G>C	p.Glu664Gln	p.E664Q	ENST00000286301	NM_005211.3	664	Gag/Cag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936168	71936168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	193	1029	0	ENST00000298229.2:c.140G>A	p.Arg47Gln	p.R47Q	ENST00000298229	NM_001567.3	47	cGa/cAa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28913430	28913430	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			69	19	588	0	ENST00000282397.4:c.2363C>G	p.Ser788Cys	p.S788C	ENST00000282397	NM_002019.4	788	tCt/tGt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640028	3640028	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	39	1062	1	ENST00000294008.3:c.3611C>A	p.Ser1204Tyr	p.S1204Y	ENST00000294008	NM_032444.2	1204	tCc/tAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29585383	29585383	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131691072		P-0064319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	17	803	0	ENST00000358273.4:c.4195C>T	p.Gln1399Ter	p.Q1399*	ENST00000358273	NM_001042492.2	1399	Cag/Tag																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21345936	21345936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			709	242	1231	0	ENST00000215739.8:c.811G>A	p.Glu271Lys	p.E271K	ENST00000215739	NM_006767.3	271	Gaa/Aaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245376	153245376	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			64	24	568	0	ENST00000281708.4:c.1815C>G	p.Ile605Met	p.I605M	ENST00000281708	NM_033632.3	605	atC/atG																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526898	31526898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	121	898	0	ENST00000344624.3:c.142C>T	p.Pro48Ser	p.P48S	ENST00000344624		48	Cct/Tct																																																																															
FLT4	2324	MSKCC	GRCh37	5	180045880	180045880	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064319-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			748	204	1263	0	ENST00000261937.6:c.2891T>C	p.Val964Ala	p.V964A	ENST00000261937	NM_182925.4	964	gTg/gCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0063696-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	68	589	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063696-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	29	539	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78727975	78727975	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148973724		P-0063696-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			771	94	489	0	ENST00000306801.3:c.820G>A	p.Ala274Thr	p.A274T	ENST00000306801	NM_020761.2	274	Gcc/Acc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222212	2222212	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375286771		P-0063696-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			747	82	679	1	ENST00000326181.6:c.496G>A	p.Val166Ile	p.V166I	ENST00000326181	NM_032271.2	166	Gtc/Atc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2954976	2954976	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772829458		P-0063696-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1051	93	660	1	ENST00000396946.4:c.2734C>T	p.Arg912Trp	p.R912W	ENST00000396946	NM_032415.4	912	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0064053-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	85	668	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0064053-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	36	624	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11094856	11094856	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064053-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	53	667	0	ENST00000344626.4:c.29G>T	p.Gly10Val	p.G10V	ENST00000344626	NM_003072.3	10	gGa/gTa																																																																															
PGR	5241	MSKCC	GRCh37	11	100998635	100998635	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TT			P-0064053-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	97	897	0	ENST00000325455.5:c.1167delinsAA	p.Glu390ArgfsTer184	p.E390Rfs*184	ENST00000325455	NM_001202474.3	389	gaG/gaAA																																																																															
TP53	7157	MSKCC	GRCh37	17	7579344	7579345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0064142-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	139	575	0	ENST00000269305.4:c.342dup	p.His115AlafsTer34	p.H115Afs*34	ENST00000269305	NM_001126112.2	114	-/G																																																																															
PTEN	5728	MSKCC	GRCh37	10	89725059	89725059	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0064142-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	75	201	0	ENST00000371953.3:c.1042A>C	p.Thr348Pro	p.T348P	ENST00000371953	NM_000314.4	348	Aca/Cca																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244095	46244095	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064142-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	130	502	0	ENST00000334344.6:c.2189T>C	p.Val730Ala	p.V730A	ENST00000334344	NM_152641.2	730	gTt/gCt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0064143-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	49	530	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0064153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	80	193	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs985033810		P-0064153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	126	427	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68857311	68857312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0064153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	93	312	0	ENST00000261769.5:c.1947dup	p.Ile650TyrfsTer13	p.I650Yfs*13	ENST00000261769	NM_004360.3	649	tct/tcTt																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123247516	123247516	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519795		P-0064153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	97	315	0	ENST00000358487.5:c.1975A>G	p.Lys659Glu	p.K659E	ENST00000358487	NM_000141.4	659	Aag/Gag																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123256215	123256215	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121918506		P-0064153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	45	446	0	ENST00000358487.5:c.1694A>C	p.Glu565Ala	p.E565A	ENST00000358487	NM_000141.4	565	gAg/gCg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150902552	150902552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	47	361	0	ENST00000271640.5:c.370G>A	p.Glu124Lys	p.E124K	ENST00000271640	NM_001145415.1	124	Gag/Aag																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47599342	47599344	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0064153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	293	457	0	ENST00000395288.2:c.208_210del	p.Phe70del	p.F70del	ENST00000395288	NM_016506.5	70	TTC/-																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114235	115114285	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCATCAAACACCCTCATGGACTGCAGGGTGAGCTGTTTTCTGTGGCAGA	TTTCATCAAACACCCTCATGGACTGCAGGGTGAGCTGTTTTCTGTGGCAGA	-			P-0064153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	242	372	0	ENST00000257566.3:c.942-10_982del		p.X314_splice	ENST00000257566	NM_016569.3	314																																																																																
FOXF1	2294	MSKCC	GRCh37	16	86544591	86544591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	117	587	0	ENST00000262426.4:c.416G>A	p.Arg139Gln	p.R139Q	ENST00000262426	NM_001451.2	139	cGg/cAg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148512065	148512065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	42	404	0	ENST00000320356.2:c.1613C>T	p.Ser538Leu	p.S538L	ENST00000320356	NM_004456.4	538	tCg/tTg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61713087	61713087	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0064157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	57	344	0	ENST00000401558.2:c.2324del	p.Asn775IlefsTer32	p.N775Ifs*32	ENST00000401558	NM_003400.3	775	aAt/at																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538866	23538867	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0064157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	82	507	0	ENST00000380871.4:c.572dup	p.Leu191PhefsTer25	p.L191Ffs*25	ENST00000380871	NM_006167.3	191	ttg/ttTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0059251-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			156	81	181	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
POLE	5426	MSKCC	GRCh37	12	133249330	133249332	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0059251-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			442	221	472	0	ENST00000320574.5:c.1567_1569del	p.Glu523del	p.E523del	ENST00000320574	NM_006231.2	523	GAG/-																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115698	8115704	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTAGATT	TTAGATT	A			P-0059251-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			291	161	320	0	ENST00000346208.3:c.1048-4_1050delinsA		p.X350_splice	ENST00000346208		350																																																																																
CBFB	865	MSKCC	GRCh37	16	67070562	67070571	+	protein_altering_variant	In_Frame_Del	DEL	CAATCTGTCT	CAATCTGTCT	A			P-0059251-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			255	231	349	0	ENST00000412916.2:c.186_195delinsA	p.Asn63_Ser65del	p.N63_S65del	ENST00000412916		62	acCAATCTGTCT/acA																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0061028-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			239	75	547	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0061028-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	61	453	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922324	178922324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793732		P-0061028-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			110	114	251	0	ENST00000263967.3:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000263967	NM_006218.2	365	Gaa/Aaa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448309	56448309	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781449421		P-0061028-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			327	87	367	0	ENST00000407977.2:c.338G>A	p.Arg113Gln	p.R113Q	ENST00000407977		113	cGa/cAa																																																																															
MGA	23269	MSKCC	GRCh37	15	42052659	42052659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061028-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			314	64	372	0	ENST00000219905.7:c.7330G>A	p.Glu2444Lys	p.E2444K	ENST00000219905	NM_001164273.1	2444	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717695	89717696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0061028-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			125	53	382	0	ENST00000371953.3:c.722_723dup	p.Glu242LeufsTer15	p.E242Lfs*15	ENST00000371953	NM_000314.4	240	-/TT																																																																															
ATM	472	MSKCC	GRCh37	11	108129785	108129785	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs587778067		P-0061028-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			130	38	229	0	ENST00000278616.4:c.2449G>C	p.Asp817His	p.D817H	ENST00000278616	NM_000051.3	817	Gat/Cat																																																																															
MTOR	2475	MSKCC	GRCh37	1	11169787	11169787	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0061028-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			189	55	139	0	ENST00000361445.4:c.7367-1G>C		p.X2456_splice	ENST00000361445	NM_004958.3	2456																																																																																
TET1	80312	MSKCC	GRCh37	10	70406606	70406606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061028-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			364	79	435	0	ENST00000373644.4:c.4120G>A	p.Glu1374Lys	p.E1374K	ENST00000373644	NM_030625.2	1374	Gaa/Aaa																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68292285	68292285	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061028-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			293	56	297	0	ENST00000487270.1:c.189G>C	p.Lys63Asn	p.K63N	ENST00000487270	NM_133509.3	63	aaG/aaC																																																																															
STAT3	6774	MSKCC	GRCh37	17	40481616	40481616	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061028-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			252	144	290	0	ENST00000264657.5:c.1189G>C	p.Glu397Gln	p.E397Q	ENST00000264657	NM_139276.2	397	Gaa/Caa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38184274	38184274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061028-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1791	737	381	0	ENST00000317025.8:c.1682C>T	p.Ser561Phe	p.S561F	ENST00000317025	NM_023034.1	561	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0063535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			405	227	483	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32950926	32950926	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0063535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			370	117	394	0	ENST00000380152.3:c.8752G>A	p.Glu2918Lys	p.E2918K	ENST00000380152		2918	Gag/Aag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922802	44922802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0063535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			223	118	218	0	ENST00000377967.4:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000377967	NM_021140.2	555	Cag/Tag																																																																															
CD276	80381	MSKCC	GRCh37	15	73996065	73996065	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747735855		P-0063535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			550	49	571	0	ENST00000318443.5:c.799C>T	p.Arg267Cys	p.R267C	ENST00000318443	NM_001024736.1	267	Cgc/Tgc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206652341	206652341	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0063535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			564	65	549	0	ENST00000367120.3:c.1048C>T	p.Gln350Ter	p.Q350*	ENST00000367120	NM_014002.3	350	Cag/Tag																																																																															
WT1	7490	MSKCC	GRCh37	11	32414281	32414281	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	143	350	0	ENST00000332351.3:c.1270G>T	p.Asp424Tyr	p.D424Y	ENST00000332351	NM_024426.4	424	Gac/Tac																																																																															
POT1	25913	MSKCC	GRCh37	7	124503533	124503533	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	125	350	0	ENST00000357628.3:c.417G>T	p.Trp139Cys	p.W139C	ENST00000357628	NM_015450.2	139	tgG/tgT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0063535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	121	261	1	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111884948	111884948	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	219	492	0	ENST00000341259.2:c.946G>C	p.Glu316Gln	p.E316Q	ENST00000341259	NM_005475.2	316	Gag/Cag																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225883	2225883	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			425	202	543	0	ENST00000326181.6:c.1675G>T	p.Gly559Cys	p.G559C	ENST00000326181	NM_032271.2	559	Ggt/Tgt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89858397	89858397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			409	192	481	0	ENST00000389301.3:c.1163G>T	p.Arg388Ile	p.R388I	ENST00000389301	NM_000135.2	388	aGa/aTa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15308347	15308347	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			379	93	458	0	ENST00000263388.2:c.161G>C	p.Arg54Pro	p.R54P	ENST00000263388	NM_000435.2	54	cGt/cCt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212293146	212293146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	74	250	0	ENST00000342788.4:c.2706C>A	p.Asp902Glu	p.D902E	ENST00000342788	NM_005235.2	902	gaC/gaA																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138453639	138453639	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			398	41	291	0	ENST00000289153.2:c.809G>T	p.Arg270Leu	p.R270L	ENST00000289153	NM_006219.2	270	cGg/cTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55979618	55979618	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			326	103	306	0	ENST00000263923.4:c.829C>G	p.Leu277Val	p.L277V	ENST00000263923	NM_002253.2	277	Cta/Gta																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449767	149449767	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			582	60	506	0	ENST00000286301.3:c.1297C>A	p.Gln433Lys	p.Q433K	ENST00000286301	NM_005211.3	433	Cag/Aag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188830	32188830	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			608	74	612	0	ENST00000375023.3:c.724G>T	p.Gly242Cys	p.G242C	ENST00000375023	NM_004557.3	242	Ggc/Tgc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739768	41739768	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0063535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			356	125	485	0	ENST00000242208.4:c.205A>T	p.Lys69Ter	p.K69*	ENST00000242208	NM_002192.2	69	Aag/Tag																																																																															
TEK	7010	MSKCC	GRCh37	9	27173238	27173238	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			378	109	414	0	ENST00000380036.4:c.779T>G	p.Phe260Cys	p.F260C	ENST00000380036	NM_000459.3	260	tTt/tGt																																																																															
TEK	7010	MSKCC	GRCh37	9	27173346	27173346	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063535-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			303	98	397	0	ENST00000380036.4:c.887T>C	p.Leu296Pro	p.L296P	ENST00000380036	NM_000459.3	296	cTg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934573		P-0063741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			495	72	374	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0063741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			436	46	282	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584497	48584497	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0063741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			474	63	330	0	ENST00000342988.3:c.670C>T	p.Gln224Ter	p.Q224*	ENST00000342988	NM_005359.5	224	Cag/Tag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2164215	2164215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			467	76	374	0	ENST00000398665.3:c.32C>T	p.Ser11Leu	p.S11L	ENST00000398665	NM_032482.2	11	tCg/tTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433617	49433617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			776	84	565	0	ENST00000301067.7:c.7936G>A	p.Glu2646Lys	p.E2646K	ENST00000301067	NM_003482.3	2646	Gaa/Aaa																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169993035	169993035	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs370513574		P-0063741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			562	32	205	0	ENST00000295797.4:c.665C>G	p.Ser222Ter	p.S222*	ENST00000295797	NM_002740.5	222	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577052	7577052	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs672601296		P-0063741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			690	111	565	0	ENST00000269305.4:c.886C>T	p.His296Tyr	p.H296Y	ENST00000269305	NM_001126112.2	296	Cac/Tac																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137026	64137026	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			533	85	377	0	ENST00000334205.4:c.1537C>G	p.Leu513Val	p.L513V	ENST00000334205	NM_003942.2	513	Ctc/Gtc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28886147	28886147	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			422	40	288	0	ENST00000282397.4:c.3475C>G	p.Gln1159Glu	p.Q1159E	ENST00000282397	NM_002019.4	1159	Caa/Gaa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610019	81610019	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			776	81	571	0	ENST00000298171.2:c.1617T>G	p.Cys539Trp	p.C539W	ENST00000298171	NM_000369.2	539	tgT/tgG																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43762157	43762157	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			613	102	386	0	ENST00000382044.4:c.1288G>C	p.Glu430Gln	p.E430Q	ENST00000382044	NM_001141980.1	430	Gag/Cag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43762193	43762193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			610	99	375	0	ENST00000382044.4:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000382044	NM_001141980.1	418	Gaa/Aaa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163795	32163796	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0063741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			555	72	471	0	ENST00000375023.3:c.5430dup	p.Asn1811Ter	p.N1811*	ENST00000375023	NM_004557.3	1810	-/T																																																																															
BRAF	673	MSKCC	GRCh37	7	140482862	140482862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			808	80	490	0	ENST00000288602.6:c.1273G>A	p.Glu425Lys	p.E425K	ENST00000288602	NM_004333.4	425	Gaa/Aaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874792	151874793	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0063741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			678	67	471	0	ENST00000262189.6:c.7745dup	p.Glu2583ArgfsTer5	p.E2583Rfs*5	ENST00000262189	NM_170606.2	2582	gta/gtTa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342596	87342596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063741-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			472	50	359	0	ENST00000277120.3:c.881C>T	p.Ser294Phe	p.S294F	ENST00000277120		294	tCt/tTt																																																																															
CBFB	865	MSKCC	GRCh37	16	67070640	67070643	+	frameshift_variant	Frame_Shift_Del	DEL	AGAA	AGAA	-			P-0063878-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			148	178	407	0	ENST00000412916.2:c.267_270del	p.Arg90LysfsTer7	p.R90Kfs*7	ENST00000412916		88	ttAGAA/tt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115701	8115701	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0063878-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			274	162	415	0	ENST00000346208.3:c.1048-1G>A		p.X350_splice	ENST00000346208		350																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0063970-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	101	520	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0063970-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	162	667	1	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538897	23538897	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1200957711		P-0063970-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	79	498	0	ENST00000380871.4:c.542G>A	p.Arg181Gln	p.R181Q	ENST00000380871	NM_006167.3	181	cGa/cAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178098	56178098	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0063970-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	63	475	0	ENST00000399503.3:c.3071A>C	p.Lys1024Thr	p.K1024T	ENST00000399503	NM_005921.1	1024	aAg/aCg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752789	57752789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063970-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	55	439	0	ENST00000274289.3:c.1139G>C	p.Arg380Thr	p.R380T	ENST00000274289	NM_006622.3	380	aGa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0063972-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	344	637	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0063972-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	312	475	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0063972-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	200	626	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562982	21562982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063972-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			829	156	655	0	ENST00000382592.4:c.937G>A	p.Val313Met	p.V313M	ENST00000382592	NM_014572.2	313	Gtg/Atg																																																																															
TET1	80312	MSKCC	GRCh37	10	70450883	70450883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063972-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	149	650	0	ENST00000373644.4:c.5723C>T	p.Ala1908Val	p.A1908V	ENST00000373644	NM_030625.2	1908	gCt/gTt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114905759	114905770	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTCTTTGTAGG	CTTCTTTGTAGG	-			P-0063972-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	93	294	0	ENST00000543371.1:c.789-10_790del		p.X263_splice	ENST00000543371	NM_001198531.1	263																																																																																
SMAD2	4087	MSKCC	GRCh37	18	45374865	45374920	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTACCGTGGCATTTCGGTTAACATTGGAGAGTAAACCTAAGCAGAACCTCTCTG	TTCTACCGTGGCATTTCGGTTAACATTGGAGAGTAAACCTAAGCAGAACCTCTCTG	-			P-0063972-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	73	435	0	ENST00000262160.6:c.923_978del	p.Ser308TyrfsTer22	p.S308Yfs*22	ENST00000262160	NM_005901.5	308	tCAGAGAGGTTCTGCTTAGGTTTACTCTCCAATGTTAACCGAAATGCCACGGTAGAA/t																																																																															
ALB	213	MSKCC	GRCh37	4	74285973	74285974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0063972-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	61	316	0	ENST00000295897.4:c.1794dup	p.Leu599ThrfsTer30	p.L599Tfs*30	ENST00000295897	NM_000477.5	596	-/A																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0063974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	60	406	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0063974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	14	262	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0063974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	36	579	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0063974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	39	537	0	ENST00000257430.4:c.4393_4394dup	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653864	89653865	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	AACT			P-0063974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	30	329	0	ENST00000371953.3:c.163_164insACTA	p.Arg55AsnfsTer2	p.R55Nfs*2	ENST00000371953	NM_000314.4	54	-/AACT																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911934	32911934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	38	480	0	ENST00000380152.3:c.3442C>A	p.Gln1148Lys	p.Q1148K	ENST00000380152		1148	Cag/Aag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18968195	18968195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	90	511	0	ENST00000262803.5:c.2035G>A	p.Gly679Arg	p.G679R	ENST00000262803	NM_002911.3	679	Ggg/Agg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968141	68968141	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0063974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	16	409	0	ENST00000288368.4:c.1170C>A	p.Cys390Ter	p.C390*	ENST00000288368	NM_024870.2	390	tgC/tgA																																																																															
RAD21	5885	MSKCC	GRCh37	8	117868894	117868894	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063974-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	11	332	0	ENST00000297338.2:c.805A>T	p.Asn269Tyr	p.N269Y	ENST00000297338	NM_006265.2	269	Aat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0064067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	64	337	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0064067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	46	378	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	44	252	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591909	48591909	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121912576		P-0064067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	81	452	0	ENST00000342988.3:c.1072G>T	p.Gly358Ter	p.G358*	ENST00000342988	NM_005359.5	358	Gga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0064068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	78	367	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860667	151860667	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0064068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	217	569	0	ENST00000262189.6:c.9995T>A	p.Leu3332Ter	p.L3332*	ENST00000262189	NM_170606.2	3332	tTa/tAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152055756	152055756	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1283285486		P-0064068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	93	254	0	ENST00000262189.6:c.166C>T	p.Arg56Ter	p.R56*	ENST00000262189	NM_170606.2	56	Cga/Tga																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961567	54961567	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	79	350	0	ENST00000312783.6:c.65C>A	p.Pro22Gln	p.P22Q	ENST00000312783	NM_198436.1	22	cCa/cAa																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589650	69589651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0064070-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			715	40	869	0	ENST00000168712.1:c.202dup	p.Ala68GlyfsTer87	p.A68Gfs*87	ENST00000168712	NM_002007.2	68	gcc/gGcc																																																																															
PGR	5241	MSKCC	GRCh37	11	100999387	100999387	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064070-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	39	489	0	ENST00000325455.5:c.415T>A	p.Ser139Thr	p.S139T	ENST00000325455	NM_001202474.3	139	Tct/Act																																																																															
ATM	472	MSKCC	GRCh37	11	108153513	108153513	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0064070-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	22	220	0	ENST00000278616.4:c.3653T>G	p.Val1218Gly	p.V1218G	ENST00000278616	NM_000051.3	1218	gTt/gGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064070-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	52	264	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926255	112926255	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0064070-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	57	306	0	ENST00000351677.2:c.1388T>C	p.Ile463Thr	p.I463T	ENST00000351677	NM_002834.3	463	aTt/aCt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562339	21562339	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064070-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	74	521	0	ENST00000382592.4:c.1580A>T	p.Lys527Met	p.K527M	ENST00000382592	NM_014572.2	527	aAg/aTg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251265	99251265	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760481311		P-0064070-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	61	495	0	ENST00000268035.6:c.569C>T	p.Pro190Leu	p.P190L	ENST00000268035	NM_000875.3	190	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753660142		P-0064070-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	53	465	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604755	48604755	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064070-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	60	448	0	ENST00000342988.3:c.1577A>T	p.Glu526Val	p.E526V	ENST00000342988	NM_005359.5	526	gAa/gTa																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422113	47422113	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0064070-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	117	391	0	ENST00000404338.3:c.181A>C	p.Ser61Arg	p.S61R	ENST00000404338	NM_004491.4	61	Agt/Cgt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467442	25467442	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0064070-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	65	504	0	ENST00000264709.3:c.1634A>C	p.Glu545Ala	p.E545A	ENST00000264709	NM_175629.2	545	gAg/gCg																																																																															
RAC2	5880	MSKCC	GRCh37	22	37640175	37640175	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0064070-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	50	527	0	ENST00000249071.6:c.14A>C	p.Lys5Thr	p.K5T	ENST00000249071	NM_002872.4	5	aAg/aCg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878227	151878227	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0064070-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	57	511	0	ENST00000262189.6:c.6718A>T	p.Arg2240Ter	p.R2240*	ENST00000262189	NM_170606.2	2240	Aga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0064070-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	68	525	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448270	56448270	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0064071-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	150	430	0	ENST00000407977.2:c.375+2T>C		p.X125_splice	ENST00000407977		125																																																																																
MET	4233	MSKCC	GRCh37	7	116340168	116340168	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761768345		P-0064071-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	57	332	0	ENST00000397752.3:c.1030G>A	p.Gly344Arg	p.G344R	ENST00000397752	NM_000245.2	344	Ggg/Agg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867068	45867068	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064071-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	60	410	0	ENST00000391945.4:c.1051C>T	p.Gln351Ter	p.Q351*	ENST00000391945	NM_000400.3	351	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7590693	7590693	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0064071-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	101	414	0	ENST00000269305.4:c.-29+2T>G		p.X10_splice	ENST00000269305	NM_001126112.2	10																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591931	+	frameshift_variant	Frame_Shift_Del	DEL	GCTTTTGTTTGGG	GCTTTTGTTTGGG	-			P-0064071-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	111	328	0	ENST00000342988.3:c.1082_1094del	p.Arg361LeufsTer19	p.R361Lfs*19	ENST00000342988	NM_005359.5	361	cGCTTTTGTTTGGGt/ct																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262523	10262523	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0064071-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	82	318	0	ENST00000340748.4:c.1972G>C	p.Val658Leu	p.V658L	ENST00000340748		658	Gtg/Ctg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69069622	69069622	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064071-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	49	241	0	ENST00000288368.4:c.4297A>G	p.Ile1433Val	p.I1433V	ENST00000288368	NM_024870.2	1433	Ata/Gta																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925316	114925317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769592153		P-0064085-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	176	278	6	ENST00000543371.1:c.1403dup	p.Cys469ValfsTer8	p.C469Vfs*8	ENST00000543371	NM_001198531.1	465	aga/agAa																																																																															
APC	324	MSKCC	GRCh37	5	112175193	112175193	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0064085-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	263	367	0	ENST00000257430.4:c.3904del	p.Leu1302CysfsTer3	p.L1302Cfs*3	ENST00000257430	NM_000038.5	1301	aCc/ac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467590	66467590	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746706656		P-0064085-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	122	371	0	ENST00000273854.3:c.679C>T	p.Arg227Cys	p.R227C	ENST00000273854	NM_004439.5	227	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0064085-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	179	219	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0064086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	283	603	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0064086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			4703	580	536	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624290	89624290	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	105	274	0	ENST00000371953.3:c.64G>T	p.Asp22Tyr	p.D22Y	ENST00000371953	NM_000314.4	22	Gac/Tac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720874	89720891	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTCAGTTAAATTAAAC	AGGTCAGTTAAATTAAAC	-			P-0064086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	21	155	0	ENST00000371953.3:c.1026_1026+17del		p.X342_splice	ENST00000371953	NM_000314.4	342																																																																																
MSH2	4436	MSKCC	GRCh37	2	47639559	47639559	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	102	282	0	ENST00000233146.2:c.652C>G	p.Gln218Glu	p.Q218E	ENST00000233146	NM_000251.2	218	Caa/Gaa																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434181	12434182	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0064086-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	43	413	0	ENST00000287820.6:c.556dup	p.Ser186LysfsTer2	p.S186Kfs*2	ENST00000287820	NM_015869.4	183	-/A																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0064098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	141	453	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163512	47163512	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	97	383	0	ENST00000409792.3:c.2614C>T	p.Gln872Ter	p.Q872*	ENST00000409792	NM_014159.6	872	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0064098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	148	462	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
NF1	4763	MSKCC	GRCh37	17	29663350	29663350	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0064098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	88	265	0	ENST00000358273.4:c.6007-1G>C		p.X2003_splice	ENST00000358273	NM_001042492.2	2003																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0064103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	218	671	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
RB1	5925	MSKCC	GRCh37	13	49033865	49033865	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369755801		P-0064103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	103	457	0	ENST00000267163.4:c.2002C>T	p.Arg668Cys	p.R668C	ENST00000267163	NM_000321.2	668	Cgc/Tgc																																																																															
AXL	558	MSKCC	GRCh37	19	41758762	41758762	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064103-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	67	625	0	ENST00000301178.4:c.1816C>T	p.Gln606Ter	p.Q606*	ENST00000301178	NM_021913.4	606	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0064108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	30	358	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578242	7578242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	21	567	0	ENST00000269305.4:c.607G>T	p.Val203Leu	p.V203L	ENST00000269305	NM_001126112.2	203	Gtg/Ttg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307243	118307243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	16	310	0	ENST00000534358.1:c.16C>T	p.Arg6Trp	p.R6W	ENST00000534358	NM_005933.3	6	Cgg/Tgg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061087	38061087	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	83	553	0	ENST00000250448.2:c.902C>G	p.Ser301Cys	p.S301C	ENST00000250448	NM_004496.3	301	tCt/tGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061189	38061191	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0064110-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	111	565	0	ENST00000250448.2:c.798_800del	p.Phe266_Lys267delinsLeu	p.F266_K267delinsL	ENST00000250448	NM_004496.3	266	ttCAAg/ttg																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0064121-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	164	530	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249510	153249510	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1157879635		P-0064121-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	83	458	0	ENST00000281708.4:c.1268G>T	p.Gly423Val	p.G423V	ENST00000281708	NM_033632.3	423	gGa/gTa																																																																															
ATM	472	MSKCC	GRCh37	11	108205765	108205765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064121-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	57	446	0	ENST00000278616.4:c.8080G>A	p.Gly2694Arg	p.G2694R	ENST00000278616	NM_000051.3	2694	Gga/Aga																																																																															
RET	5979	MSKCC	GRCh37	10	43597990	43597990	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs76449634		P-0064121-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			705	89	724	1	ENST00000355710.3:c.538C>T	p.Arg180Ter	p.R180*	ENST00000355710	NM_020975.4	180	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0064121-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	55	345	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032463	12032463	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0064121-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	71	424	0	ENST00000353533.5:c.899T>G	p.Leu300Trp	p.L300W	ENST00000353533	NM_003010.3	300	tTg/tGg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93973599	93973599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064121-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	39	337	0	ENST00000369303.4:c.1777G>T	p.Asp593Tyr	p.D593Y	ENST00000369303	NM_004440.3	593	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0064122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	256	593	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398123121		P-0064122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	167	549	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs387906846		P-0064122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			835	97	785	0	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25973094	25973094	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064122-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			873	53	653	0	ENST00000435504.4:c.1331A>T	p.Lys444Ile	p.K444I	ENST00000435504		444	aAa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0064124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	290	514	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0064124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	46	345	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175153	112175153	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0064124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	192	438	0	ENST00000257430.4:c.3862G>T	p.Gly1288Ter	p.G1288*	ENST00000257430	NM_000038.5	1288	Gga/Tga																																																																															
AR	367	MSKCC	GRCh37	X	66765778	66765778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	123	636	0	ENST00000374690.3:c.790C>T	p.Arg264Trp	p.R264W	ENST00000374690	NM_000044.3	264	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	136	315	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068302	30068302	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0064124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	62	295	0	ENST00000331968.5:c.2097T>A	p.Phe699Leu	p.F699L	ENST00000331968	NM_002742.2	699	ttT/ttA																																																																															
RAD51	5888	MSKCC	GRCh37	15	40991027	40991027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	106	371	0	ENST00000267868.3:c.71C>T	p.Pro24Leu	p.P24L	ENST00000267868	NM_002875.4	24	cCc/cTc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119752	70119753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0064124-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	97	362	0	ENST00000245479.2:c.755_756dup	p.Lys253Ter	p.K253*	ENST00000245479	NM_000346.3	252	ctg/cTGtg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089685	27089685	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0064132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	102	599	0	ENST00000324856.7:c.2641del	p.Ser881GlnfsTer10	p.S881Qfs*10	ENST00000324856	NM_006015.4	881	Tca/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0064132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	106	294	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068269	30068287	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTGGTTTGAGGTCACAG	TTCTGGTTTGAGGTCACAG	-			P-0064132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	51	364	0	ENST00000331968.5:c.2112_2130del	p.His704GlnfsTer5	p.H704Qfs*5	ENST00000331968	NM_002742.2	704	caCTGTGACCTCAAACCAGAA/ca																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100046	30100046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	66	554	0	ENST00000331968.5:c.1574G>T	p.Gly525Val	p.G525V	ENST00000331968	NM_002742.2	525	gGt/gTt																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458333	12458333	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	65	487	0	ENST00000287820.6:c.950C>G	p.Ser317Cys	p.S317C	ENST00000287820	NM_015869.4	317	tCc/tGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922364	178922364	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397514565		P-0064132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	29	218	0	ENST00000263967.3:c.1133G>A	p.Cys378Tyr	p.C378Y	ENST00000263967	NM_006218.2	378	tGt/tAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197788	66197788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	60	435	0	ENST00000273854.3:c.2911G>T	p.Gly971Cys	p.G971C	ENST00000273854	NM_004439.5	971	Ggt/Tgt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460476	149460476	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	53	642	0	ENST00000286301.3:c.161C>A	p.Pro54Gln	p.P54Q	ENST00000286301	NM_005211.3	54	cCa/cAa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959178	2959178	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	63	483	0	ENST00000396946.4:c.2338C>A	p.Leu780Met	p.L780M	ENST00000396946	NM_032415.4	780	Ctg/Atg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245084	53245084	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	72	556	0	ENST00000375401.3:c.856A>T	p.Thr286Ser	p.T286S	ENST00000375401	NM_004187.3	286	Aca/Tca																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412473	63412473	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	66	621	0	ENST00000330258.3:c.694C>T	p.Gln232Ter	p.Q232*	ENST00000330258	NM_152424.3	232	Caa/Taa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0063082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			497	26	386	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0063082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			535	37	471	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187847	11187847	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			574	34	405	0	ENST00000361445.4:c.6050T>C	p.Ile2017Thr	p.I2017T	ENST00000361445	NM_004958.3	2017	aTc/aCc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161742	47161742	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0063082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			652	42	511	0	ENST00000409792.3:c.4384G>T	p.Glu1462Ter	p.E1462*	ENST00000409792	NM_014159.6	1462	Gaa/Taa																																																																															
FH	2271	MSKCC	GRCh37	1	241661135	241661136	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	CA			P-0063160-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			345	21	380	0	ENST00000366560.3:c.1525_1526delinsTG	p.Pro509Ter	p.P509*	ENST00000366560	NM_000143.3	509	CCa/TGa																																																																															
RB1	5925	MSKCC	GRCh37	13	48916747	48916747	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131690915		P-0063160-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			148	65	271	0	ENST00000267163.4:c.277C>T	p.Gln93Ter	p.Q93*	ENST00000267163	NM_000321.2	93	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0063160-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			446	94	467	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0063160-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			384	84	450	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
CD79B	974	MSKCC	GRCh37	17	62007656	62007656	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs912718113		P-0063160-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			453	83	558	0	ENST00000392795.3:c.211G>A	p.Ala71Thr	p.A71T	ENST00000392795	NM_001039933.1	71	Gcc/Acc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911464	134911464	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063160-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	86	455	0	ENST00000398015.3:c.1929G>T	p.Lys643Asn	p.K643N	ENST00000398015	NM_004441.4	643	aaG/aaT																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0063160-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			274	123	458	1				ENST00000310581	NM_198253.2																																																																																	
TEK	7010	MSKCC	GRCh37	9	27220064	27220064	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780622660		P-0063160-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			488	66	397	0	ENST00000380036.4:c.3121G>A	p.Gly1041Arg	p.G1041R	ENST00000380036	NM_000459.3	1041	Ggg/Agg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039371	47039378	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGTCAT	CGCGTCAT	-			P-0063160-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			192	141	297	0	ENST00000329236.7:c.763_770del	p.Arg255LysfsTer45	p.R255Kfs*45	ENST00000329236	NM_001204466.1	255	CGCGTCATa/a																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0063969-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	290	473	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0063969-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	573	574	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086010	16086010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063969-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	316	485	0	ENST00000281043.3:c.1186G>A	p.Asp396Asn	p.D396N	ENST00000281043	NM_005378.4	396	Gac/Aac																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38274849	38274849	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063969-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	282	400	0	ENST00000425967.3:c.1731C>G	p.Asn577Lys	p.N577K	ENST00000425967	NM_001174067.1	577	aaC/aaG																																																																															
APC	324	MSKCC	GRCh37	5	112173531	112173531	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs773020689		P-0063969-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	329	503	0	ENST00000257430.4:c.2240C>G	p.Ser747Ter	p.S747*	ENST00000257430	NM_000038.5	747	tCa/tGa																																																																															
RB1	5925	MSKCC	GRCh37	13	48937046	48937046	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0063969-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	256	355	0	ENST00000267163.4:c.814A>T	p.Arg272Ter	p.R272*	ENST00000267163	NM_000321.2	272	Aga/Tga																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417469	139417469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063969-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	201	695	0	ENST00000277541.6:c.575G>A	p.Gly192Glu	p.G192E	ENST00000277541	NM_017617.3	192	gGa/gAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0064194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	91	217	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0064194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	331	683	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0064194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	266	563	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0064194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	266	508	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022592	31022592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs373221034		P-0064194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	220	633	0	ENST00000375687.4:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000375687	NM_015338.5	693	Cga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120818	115120818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	247	629	0	ENST00000257566.3:c.188C>T	p.Pro63Leu	p.P63L	ENST00000257566	NM_016569.3	63	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0064194-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	164	312	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0064195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	38	741	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931588		P-0064195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	34	499	0	ENST00000349496.5:c.94G>A	p.Asp32Asn	p.D32N	ENST00000349496	NM_001904.3	32	Gac/Aac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049652-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	557	717	1	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231201	46231201	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049652-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			23	21	314	0	ENST00000334344.6:c.1120+1G>A		p.X374_splice	ENST00000334344	NM_152641.2	374																																																																																
CBL	867	MSKCC	GRCh37	11	119103212	119103212	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1379287344		P-0049652-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			585	197	487	0	ENST00000264033.4:c.250A>G	p.Ile84Val	p.I84V	ENST00000264033	NM_005188.3	84	Atc/Gtc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720857	89720858	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049652-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			16	10	111	0	ENST00000371953.3:c.1008_1009insG	p.Phe337ValfsTer6	p.F337Vfs*6	ENST00000371953	NM_000314.4	336	-/G																																																																															
CDC42	998	MSKCC	GRCh37	1	22413210	22413210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049652-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			127	35	199	0	ENST00000344548.3:c.337G>T	p.Val113Phe	p.V113F	ENST00000344548	NM_001039802.1	113	Gtt/Ttt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489429	56489485	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTTTCTATATATCCCATAGCAAAACCCATCTGACAATGGCTTTGACAGTGATAGCA	GGTTTCTATATATCCCATAGCAAAACCCATCTGACAATGGCTTTGACAGTGATAGCA	-			P-0049652-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			148	132	326	0	ENST00000267101.3:c.1914-18_1952del		p.X638_splice	ENST00000267101	NM_001982.3	638																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31024212	31024212	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049652-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			572	156	570	0	ENST00000375687.4:c.3697G>C	p.Glu1233Gln	p.E1233Q	ENST00000375687	NM_015338.5	1233	Gag/Cag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873107	134873107	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049652-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1083	188	431	0	ENST00000398015.3:c.1411T>A	p.Tyr471Asn	p.Y471N	ENST00000398015	NM_004441.4	471	Tac/Aac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151880241	151880241	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0049652-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			191	33	306	0	ENST00000262189.6:c.5083C>A	p.Gln1695Lys	p.Q1695K	ENST00000262189	NM_170606.2	1695	Caa/Aaa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914194	32914221	+	protein_altering_variant	In_Frame_Del	DEL	AGGATATTCTTCATAACTCTCTAGATAA	AGGATATTCTTCATAACTCTCTAGATAA	GATATTC			P-0049652-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			33	28	468	1	ENST00000380152.3:c.5702_5729delinsGATATTC	p.Glu1901_Asn1910delinsGlyTyrSer	p.E1901_N1910delinsGYS	ENST00000380152		1901	gAGGATATTCTTCATAACTCTCTAGATAAt/gGATATTCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054434-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			306	240	632	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																															
AKT1	207	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054434-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			457	178	609	0	ENST00000349310.3:c.155T>G	p.Leu52Arg	p.L52R	ENST00000349310	NM_001014432.1	52	cTc/cGc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631102	69631102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121917704		P-0054434-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			635	56	600	1	ENST00000334134.2:c.310C>T	p.Arg104Ter	p.R104*	ENST00000334134	NM_005247.2	104	Cga/Tga																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797340	135797340	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054434-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			306	99	480	0	ENST00000298552.3:c.529C>G	p.Leu177Val	p.L177V	ENST00000298552	NM_001162426.1	177	Ctc/Gtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054434-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			253	328	314	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
POT1	25913	MSKCC	GRCh37	7	124503600	124503600	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1385542313		P-0054434-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			397	66	478	0	ENST00000357628.3:c.350G>A	p.Arg117His	p.R117H	ENST00000357628	NM_015450.2	117	cGc/cAc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495072	56495073	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054434-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			549	218	638	0	ENST00000267101.3:c.3430dup	p.Thr1144AsnfsTer46	p.T1144Nfs*46	ENST00000267101	NM_001982.3	1143	-/A																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144045	11144045	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145476154		P-0054434-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			459	185	574	1	ENST00000344626.4:c.3626G>A	p.Ser1209Asn	p.S1209N	ENST00000344626	NM_003072.3	1209	aGc/aAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176684035	176684035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063894-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	80	379	0	ENST00000439151.2:c.4849G>A	p.Glu1617Lys	p.E1617K	ENST00000439151	NM_022455.4	1617	Gaa/Aaa																																																																															
FYN	2534	MSKCC	GRCh37	6	112035607	112035607	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764943142		P-0063894-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	33	311	0	ENST00000368678.4:c.287G>A	p.Arg96Gln	p.R96Q	ENST00000368678		96	cGg/cAg																																																																															
RET	5979	MSKCC	GRCh37	10	43617454	43617454	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1175933358		P-0063894-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	73	370	0	ENST00000355710.3:c.2791C>A	p.Gln931Lys	p.Q931K	ENST00000355710	NM_020975.4	931	Caa/Aaa																																																																															
RAB35	11021	MSKCC	GRCh37	12	120541636	120541636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063894-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	48	479	0	ENST00000229340.5:c.221C>T	p.Thr74Ile	p.T74I	ENST00000229340	NM_006861.6	74	aCc/aTc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351079	89351079	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063894-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	123	487	0	ENST00000301030.4:c.1871A>G	p.Lys624Arg	p.K624R	ENST00000301030	NM_001256183.1	624	aAg/aGg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446603	29446603	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758750767		P-0063894-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	44	391	0	ENST00000544604.2:c.2434G>A	p.Glu812Lys	p.E812K	ENST00000544604	NM_001206998.1	812	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0063897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	76	444	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	165	382	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006897	47006897	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0063897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	135	236	0	ENST00000329236.7:c.17G>A	p.Arg6His	p.R6H	ENST00000329236	NM_001204466.1	6	cGt/cAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912173	114912173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	92	370	0	ENST00000543371.1:c.1243C>T	p.Pro415Ser	p.P415S	ENST00000543371	NM_001198531.1	415	Ccc/Tcc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89851272	89851272	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377637236		P-0063897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	60	364	0	ENST00000389301.3:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000389301	NM_000135.2	487	cGg/cAg																																																																															
HGF	3082	MSKCC	GRCh37	7	81331962	81331962	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201768315		P-0063897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	154	358	0	ENST00000222390.5:c.2122C>T	p.Arg708Ter	p.R708*	ENST00000222390	NM_000601.4	708	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976742	2976742	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1225008718		P-0063897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	42	536	0	ENST00000396946.4:c.1270C>T	p.Arg424Trp	p.R424W	ENST00000396946	NM_032415.4	424	Cgg/Tgg																																																																															
SMO	6608	MSKCC	GRCh37	7	128849189	128849189	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17710891		P-0063897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	43	442	0	ENST00000249373.3:c.1417G>A	p.Asp473Asn	p.D473N	ENST00000249373	NM_005631.4	473	Gac/Aac																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459897	149459897	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0063899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	67	554	0	ENST00000286301.3:c.310C>T	p.Pro104Ser	p.P104S	ENST00000286301	NM_005211.3	104	Cct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0063910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	67	128	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0063910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	89	84	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099382	157099408	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCTAAACCAGTTCCAGCAG	CAGCAGCAGCTAAACCAGTTCCAGCAG	-	rs1244866216		P-0063910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	28	164	0	ENST00000346085.5:c.329_355del	p.Leu110_Gln118del	p.L110_Q118del	ENST00000346085	NM_020732.3	107	CAGCAGCAGCTAAACCAGTTCCAGCAG/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0063913-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	255	413	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0063913-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	30	420	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0063913-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	200	248	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TEK	7010	MSKCC	GRCh37	9	27212761	27212761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063913-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	68	485	0	ENST00000380036.4:c.2743C>A	p.Arg915Ser	p.R915S	ENST00000380036	NM_000459.3	915	Cgc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0063914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	368	603	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008324	29008324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770377283		P-0063914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	107	384	0	ENST00000282397.4:c.547C>T	p.Arg183Cys	p.R183C	ENST00000282397	NM_002019.4	183	Cgc/Tgc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337651	73337651	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs745945890		P-0063914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	126	310	0	ENST00000377767.4:c.2065C>T	p.Arg689Ter	p.R689*	ENST00000377767	NM_014953.3	689	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891615	151891615	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0063914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	171	287	0	ENST00000262189.6:c.4417C>T	p.Gln1473Ter	p.Q1473*	ENST00000262189	NM_170606.2	1473	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0063914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	195	275	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593485	48593485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0063914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	236	367	0	ENST00000342988.3:c.1236C>A	p.Tyr412Ter	p.Y412*	ENST00000342988	NM_005359.5	412	taC/taA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0063925-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	140	294	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347903	347903	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376143198		P-0063925-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	218	426	1	ENST00000262320.3:c.1603G>A	p.Val535Ile	p.V535I	ENST00000262320	NM_003502.3	535	Gtc/Atc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73352462	73352462	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768054707		P-0063925-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	107	308	0	ENST00000377767.4:c.443C>T	p.Ala148Val	p.A148V	ENST00000377767	NM_014953.3	148	gCg/gTg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28644741	28644741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063925-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	32	253	0	ENST00000241453.7:c.52del	p.Ser18LeufsTer3	p.S18Lfs*3	ENST00000241453	NM_004119.2	18	Tct/ct																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656965	45656965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063925-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	195	370	0	ENST00000407780.3:c.191C>T	p.Thr64Ile	p.T64I	ENST00000407780	NM_001283052.1	64	aCc/aTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046838	180047674	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGAGCCCCGTGCAGAGGTCCAGGAGGACAGGCCTGGCAGCAGGAGGAGCGTGGGGAGCCACAGCGGGAAGACAAGGAGAGGTGGACAGGAGGCCGCGCATCCTCCCGGGTAGGTGTGACAGATACACCCTGCTCAGGGTGGCAGCAGGTGACCTCAGGGAGCCTGGGAACTGGGGACCCTGGCTGAGGTTCTAGGTACCCACGCCCACAGGGACAGGTCAGGCCAGGCGGAACTTCCTGGTGCAAGTTTTGAAAATGGAGGGATTCAGGCACTCCGGCCTGCAGCAGGTGGGTCGGGCAGGAGGTGTGGGTTGGGCAGGCTGGTGCTGGCCTCACCCAGGTGCAGCCGCTCTCGGGGGAATTCCCACTGGCTGGCATCGTAGGACAGGTATTCGCATTGCTCCTCCAGAGGCACCTCCCCGGGGTCCATGATGATGGACAGGTAGCCCGTCTTGATGTCTGCGTGGGCCGGCTGCGGGGAGGGGACAGGGAGGAGTGGGGCAGCTCACTGATTTGGCCATACCACTGTGGCTTGGGCAGAACTTTGCCCAGGACAGATGGCACTTCCTGCGGGGTTCTCAGTCAAGGAGGGGACAGAAAAAAAGACAGACAACCTCTGCGGGGTTGGAGCCCAGCGTGAAGGGCAGGGAGGCTTCCCAGGAAACAAGGCTGCCAGGTGAACTAGGGCGGGCACCTTATTCTTTATCTTAGGGGCGGCCAGGGTGGGGAAGGCCTGAGAGAGACTCCATCAGGAGCGGGGAGGGACACTCACCCTCCTCATGTTACAGAAGATGAGGAGGAGGAGGACCCAGAAGAAGACAGCGATGACGCCGGTACC	GGAGCCCCGTGCAGAGGTCCAGGAGGACAGGCCTGGCAGCAGGAGGAGCGTGGGGAGCCACAGCGGGAAGACAAGGAGAGGTGGACAGGAGGCCGCGCATCCTCCCGGGTAGGTGTGACAGATACACCCTGCTCAGGGTGGCAGCAGGTGACCTCAGGGAGCCTGGGAACTGGGGACCCTGGCTGAGGTTCTAGGTACCCACGCCCACAGGGACAGGTCAGGCCAGGCGGAACTTCCTGGTGCAAGTTTTGAAAATGGAGGGATTCAGGCACTCCGGCCTGCAGCAGGTGGGTCGGGCAGGAGGTGTGGGTTGGGCAGGCTGGTGCTGGCCTCACCCAGGTGCAGCCGCTCTCGGGGGAATTCCCACTGGCTGGCATCGTAGGACAGGTATTCGCATTGCTCCTCCAGAGGCACCTCCCCGGGGTCCATGATGATGGACAGGTAGCCCGTCTTGATGTCTGCGTGGGCCGGCTGCGGGGAGGGGACAGGGAGGAGTGGGGCAGCTCACTGATTTGGCCATACCACTGTGGCTTGGGCAGAACTTTGCCCAGGACAGATGGCACTTCCTGCGGGGTTCTCAGTCAAGGAGGGGACAGAAAAAAAGACAGACAACCTCTGCGGGGTTGGAGCCCAGCGTGAAGGGCAGGGAGGCTTCCCAGGAAACAAGGCTGCCAGGTGAACTAGGGCGGGCACCTTATTCTTTATCTTAGGGGCGGCCAGGGTGGGGAAGGCCTGAGAGAGACTCCATCAGGAGCGGGGAGGGACACTCACCCTCCTCATGTTACAGAAGATGAGGAGGAGGAGGACCCAGAAGAAGACAGCGATGACGCCGGTACC	-			P-0063925-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	66	216	0	ENST00000261937.6:c.2341_2543-69del		p.X781_splice	ENST00000261937	NM_182925.4	781																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27105761	27105761	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0063926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	29	502	0	ENST00000324856.7:c.5372C>G	p.Ser1791Ter	p.S1791*	ENST00000324856	NM_006015.4	1791	tCa/tGa																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39305354	39305354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	34	307	0	ENST00000373001.3:c.1071C>A	p.His357Gln	p.H357Q	ENST00000373001	NM_022157.3	357	caC/caA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690802	89690802	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs1114167621		P-0063926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			55	128	154	0	ENST00000371953.3:c.210-1G>A		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																																
SESN3	143686	MSKCC	GRCh37	11	94917731	94917731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	114	258	0	ENST00000536441.1:c.790G>A	p.Ala264Thr	p.A264T	ENST00000536441	NM_144665.3	264	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0063926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	410	451	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0063926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			94	302	379	0	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67632376	67632376	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	19	271	0	ENST00000272342.5:c.2562G>C	p.Glu854Asp	p.E854D	ENST00000272342	NM_019002.3	854	gaG/gaC																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266492	198266492	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	42	260	0	ENST00000335508.6:c.2344G>C	p.Glu782Gln	p.E782Q	ENST00000335508	NM_012433.2	782	Gag/Cag																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46275925	46275925	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			722	45	359	0	ENST00000371998.3:c.3361C>G	p.Pro1121Ala	p.P1121A	ENST00000371998		1121	Cca/Gca																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163784	47163785	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0063926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	155	319	0	ENST00000409792.3:c.2341dup	p.Thr781AsnfsTer20	p.T781Nfs*20	ENST00000409792	NM_014159.6	781	acg/aAcg																																																																															
TP63	8626	MSKCC	GRCh37	3	189590660	189590660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	33	318	0	ENST00000264731.3:c.1225G>A	p.Glu409Lys	p.E409K	ENST00000264731	NM_003722.4	409	Gag/Aag																																																																															
TET2	54790	MSKCC	GRCh37	4	106196571	106196571	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	50	381	0	ENST00000380013.4:c.4904G>C	p.Gly1635Ala	p.G1635A	ENST00000380013	NM_001127208.2	1635	gGa/gCa																																																																															
TERT	7015	MSKCC	GRCh37	5	1280308	1280308	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151121796		P-0063926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	182	453	0	ENST00000310581.5:c.1915G>A	p.Val639Ile	p.V639I	ENST00000310581	NM_198253.2	639	Gtc/Atc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149504315	149504315	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	30	274	0	ENST00000261799.4:c.1887G>C	p.Met629Ile	p.M629I	ENST00000261799	NM_002609.3	629	atG/atC																																																																															
BRAF	673	MSKCC	GRCh37	7	140624413	140624422	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCGGCGCC	CGCCGGCGCC	-			P-0063926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	223	265	0	ENST00000288602.6:c.82_91del	p.Gly28ProfsTer23	p.G28Pfs*23	ENST00000288602	NM_004333.4	28	GGCGCCGGCGcc/cc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090832	5090832	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	47	270	0	ENST00000381652.3:c.2980G>C	p.Asp994His	p.D994H	ENST00000381652	NM_004972.3	994	Gat/Cat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0063928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	34	453	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0063928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	53	316	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17743036	17743036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	35	638	0	ENST00000250003.3:c.944C>T	p.Pro315Leu	p.P315L	ENST00000250003	NM_002478.4	315	cCg/cTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123692	11123692	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063928-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	51	535	0	ENST00000344626.4:c.2342T>C	p.Met781Thr	p.M781T	ENST00000344626	NM_003072.3	781	aTg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0064027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			777	176	499	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591115	67591123	+	inframe_deletion	In_Frame_Del	DEL	CTTATCCAG	CTTATCCAG	-			P-0064027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	140	335	0	ENST00000274335.5:c.1710_1718del	p.Ile571_Leu573del	p.I571_L573del	ENST00000274335		570	CTTATCCAG/-																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625363	69625363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			762	80	567	0	ENST00000334134.2:c.430C>T	p.Arg144Cys	p.R144C	ENST00000334134	NM_005247.2	144	Cgc/Tgc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912127	114912127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			790	112	408	0	ENST00000543371.1:c.1197C>A	p.Tyr399Ter	p.Y399*	ENST00000543371	NM_001198531.1	399	taC/taA																																																																															
AR	367	MSKCC	GRCh37	X	66931340	66931340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064027-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			894	86	519	0	ENST00000374690.3:c.1982C>A	p.Thr661Lys	p.T661K	ENST00000374690	NM_000044.3	661	aCa/aAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27022913	27022938	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCGCCGCCAGCAGCCTGGGCAA	CCCGCCGCCGCCAGCAGCCTGGGCAA	-			P-0064029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	209	531	0	ENST00000324856.7:c.31_56del	p.Ser11AlafsTer91	p.S11Afs*91	ENST00000324856	NM_006015.4	7	CCCGCCGCCGCCAGCAGCCTGGGCAAc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519991		P-0064029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	360	604	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49415628	49415628	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	270	468	0	ENST00000301067.7:c.16549G>C	p.Glu5517Gln	p.E5517Q	ENST00000301067	NM_003482.3	5517	Gag/Cag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974770	21974770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0064029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	323	568	0	ENST00000304494.5:c.57del	p.Ala20ArgfsTer6	p.A20Rfs*6	ENST00000304494	NM_000077.4	19	gcC/gc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18747471	18747471	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	34	298	0	ENST00000266497.5:c.3932A>G	p.Gln1311Arg	p.Q1311R	ENST00000266497		1311	cAa/cGa																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544854	86544854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	135	537	0	ENST00000262426.4:c.679G>T	p.Gly227Cys	p.G227C	ENST00000262426	NM_001451.2	227	Ggc/Tgc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665503	138665503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064029-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	302	416	2	ENST00000330315.3:c.62G>A	p.Gly21Asp	p.G21D	ENST00000330315	NM_023067.3	21	gGt/gAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0064031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	136	464	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0064031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	193	666	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374305	138374305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	80	427	0	ENST00000289153.2:c.3139G>A	p.Glu1047Lys	p.E1047K	ENST00000289153	NM_006219.2	1047	Gag/Aag																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140165	50140165	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	293	555	0	ENST00000246792.3:c.260A>T	p.Gln87Leu	p.Q87L	ENST00000246792	NM_006270.3	87	cAg/cTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518254	187518254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	161	495	0	ENST00000441802.2:c.12440G>T	p.Gly4147Val	p.G4147V	ENST00000441802	NM_005245.3	4147	gGc/gTc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81929479	81929479	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	109	509	0	ENST00000359376.3:c.1140C>G	p.Ile380Met	p.I380M	ENST00000359376	NM_002661.3	380	atC/atG																																																																															
FANCA	2175	MSKCC	GRCh37	16	89858399	89858399	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	154	542	0	ENST00000389301.3:c.1161G>C	p.Gln387His	p.Q387H	ENST00000389301	NM_000135.2	387	caG/caC																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485448	57485448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	153	454	0	ENST00000371085.3:c.1030G>A	p.Glu344Lys	p.E344K	ENST00000371085	NM_000516.4	344	Gag/Aag																																																																															
NF2	4771	MSKCC	GRCh37	22	30038233	30038233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	172	385	0	ENST00000338641.4:c.406G>A	p.Glu136Lys	p.E136K	ENST00000338641	NM_000268.3	136	Gag/Aag																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599209	28599209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	68	590	0	ENST00000253063.3:c.655G>A	p.Glu219Lys	p.E219K	ENST00000253063	NM_031459.4	219	Gag/Aag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858800	9858800	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs768337205		P-0064031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	125	403	0	ENST00000330684.3:c.2601C>G	p.Ile867Met	p.I867M	ENST00000330684	NM_001134407.1	867	atC/atG																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206646576	206646576	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	55	472	0	ENST00000367120.3:c.6G>T	p.Gln2His	p.Q2H	ENST00000367120	NM_014002.3	2	caG/caT																																																																															
SESN3	143686	MSKCC	GRCh37	11	94906420	94906420	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			P-0064031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	78	326	0	ENST00000536441.1:c.1478G>C	p.Ter493SerextTer18	p.*493Sext*18	ENST00000536441	NM_144665.3	493	tGa/tCa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110007	115110007	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	97	501	0	ENST00000257566.3:c.1871A>T	p.His624Leu	p.H624L	ENST00000257566	NM_016569.3	624	cAc/cTc																																																																															
MSI1	4440	MSKCC	GRCh37	12	120802538	120802538	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	64	355	0	ENST00000257552.2:c.288C>A	p.Phe96Leu	p.F96L	ENST00000257552	NM_002442.3	96	ttC/ttA																																																																															
POLE	5426	MSKCC	GRCh37	12	133219271	133219271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	126	511	0	ENST00000320574.5:c.4773G>T	p.Trp1591Cys	p.W1591C	ENST00000320574	NM_006231.2	1591	tgG/tgT																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562475	21562475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	60	495	0	ENST00000382592.4:c.1444G>A	p.Glu482Lys	p.E482K	ENST00000382592	NM_014572.2	482	Gag/Aag																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33681019	33681019	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	105	441	0	ENST00000308377.4:c.1258C>A	p.His420Asn	p.H420N	ENST00000308377	NM_152270.3	420	Cac/Aac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629670	187629670	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	91	477	0	ENST00000441802.2:c.1312G>T	p.Val438Leu	p.V438L	ENST00000441802	NM_005245.3	438	Gta/Tta																																																																															
E2F3	1871	MSKCC	GRCh37	6	20487032	20487032	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0064031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	99	330	0	ENST00000346618.3:c.997G>A	p.Glu333Lys	p.E333K	ENST00000346618	NM_001949.4	333	Gag/Aag																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38157014	38157014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	115	422	0	ENST00000317025.8:c.2706G>A	p.Met902Ile	p.M902I	ENST00000317025	NM_023034.1	902	atG/atA																																																																															
MED12	9968	MSKCC	GRCh37	X	70341449	70341449	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064031-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	160	506	0	ENST00000374080.3:c.884G>T	p.Arg295Leu	p.R295L	ENST00000374080		295	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0064032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	213	583	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120846	94120846	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1300929218		P-0064032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	165	591	0	ENST00000369303.4:c.205C>T	p.Arg69Ter	p.R69*	ENST00000369303	NM_004440.3	69	Cga/Tga																																																																															
EED	8726	MSKCC	GRCh37	11	85977129	85977131	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0064032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	105	359	0	ENST00000263360.6:c.733_735del	p.Asp245del	p.D245del	ENST00000263360	NM_003797.3	244	tATGat/tat																																																																															
EED	8726	MSKCC	GRCh37	11	85989538	85989538	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0064032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	149	432	0	ENST00000263360.6:c.1297A>G	p.Ser433Gly	p.S433G	ENST00000263360	NM_003797.3	433	Agt/Ggt																																																																															
RB1	5925	MSKCC	GRCh37	13	49027184	49027184	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0064032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	157	508	0	ENST00000267163.4:c.1751del	p.Asp584ValfsTer27	p.D584Vfs*27	ENST00000267163	NM_000321.2	584	gAt/gt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151856136	151856136	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0064032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			740	204	609	0	ENST00000262189.6:c.11482C>T	p.Gln3828Ter	p.Q3828*	ENST00000262189	NM_170606.2	3828	Caa/Taa																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793244	139793244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	169	602	0	ENST00000247668.2:c.52G>A	p.Gly18Ser	p.G18S	ENST00000247668	NM_021138.3	18	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0064033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	152	294	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602487	10602488	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0064033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	196	649	0	ENST00000171111.5:c.1090_1091delinsCT	p.Gly364Leu	p.G364L	ENST00000171111	NM_203500.1	364	GGc/CTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132634	11132635	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0064033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	229	514	0	ENST00000344626.4:c.2854dup	p.Glu952GlyfsTer7	p.E952Gfs*7	ENST00000344626	NM_003072.3	950	-/G																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239598	53239598	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0064033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			661	206	506	0	ENST00000375401.3:c.1744C>G	p.Pro582Ala	p.P582A	ENST00000375401	NM_004187.3	582	Cca/Gca																																																																															
MED12	9968	MSKCC	GRCh37	X	70349190	70349190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			782	277	621	0	ENST00000374080.3:c.3602C>T	p.Ser1201Phe	p.S1201F	ENST00000374080		1201	tCc/tTc																																																																															
ATRX	546	MSKCC	GRCh37	X	76938791	76938791	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0064033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	231	432	0	ENST00000373344.5:c.1957C>A	p.Leu653Ile	p.L653I	ENST00000373344	NM_000489.3	653	Ctt/Att																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0064036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	683	536	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0064036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			91	803	593	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55138567	55138567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	48	486	0	ENST00000257290.5:c.1244C>T	p.Ser415Leu	p.S415L	ENST00000257290	NM_006206.4	415	tCa/tTa																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735351	204735351	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759766975		P-0064036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			769	249	636	0	ENST00000302823.3:c.152G>A	p.Arg51Gln	p.R51Q	ENST00000302823	NM_005214.4	51	cGa/cAa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39262364	39262364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	195	442	0	ENST00000402219.2:c.1063G>A	p.Glu355Lys	p.E355K	ENST00000402219	NM_005633.3	355	Gaa/Aaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864663	68864663	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773560075		P-0064036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	36	471	0	ENST00000288368.4:c.34G>A	p.Glu12Lys	p.E12K	ENST00000288368	NM_024870.2	12	Gag/Aag																																																																															
AXL	558	MSKCC	GRCh37	19	41748898	41748898	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1307122843		P-0064036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1059	97	702	0	ENST00000301178.4:c.1423C>T	p.Arg475Ter	p.R475*	ENST00000301178	NM_021913.4	475	Cga/Tga																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30315393	30315393	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146306622		P-0064036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			869	52	592	0	ENST00000322652.5:c.1078C>T	p.Arg360Cys	p.R360C	ENST00000322652	NM_015355.2	360	Cgt/Tgt																																																																															
MAD2L2	10459	MSKCC	GRCh37	1	11736130	11736130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	232	631	0	ENST00000235310.3:c.400G>A	p.Asp134Asn	p.D134N	ENST00000235310		134	Gat/Aat																																																																															
NRAS	4893	MSKCC	GRCh37	1	115252327	115252327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	170	489	0	ENST00000369535.4:c.313G>A	p.Asp105Asn	p.D105N	ENST00000369535	NM_002524.4	105	Gac/Aac																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195490	102195490	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1076	61	662	0	ENST00000263464.3:c.250G>C	p.Glu84Gln	p.E84Q	ENST00000263464	NM_001165.4	84	Gaa/Caa																																																																															
SETD8	387893	MSKCC	GRCh37	12	123889486	123889486	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61955123		P-0064036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	120	212	0	ENST00000330479.4:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000330479	NM_020382.3	238	cGg/cAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993813	72993813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	317	825	0	ENST00000268489.5:c.232G>A	p.Glu78Lys	p.E78K	ENST00000268489	NM_006885.3	78	Gag/Aag																																																																															
AXL	558	MSKCC	GRCh37	19	41727114	41727114	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			755	252	622	0	ENST00000301178.4:c.372G>C	p.Gln124His	p.Q124H	ENST00000301178	NM_021913.4	124	caG/caC																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719518	190719518	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0064036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	189	523	0	ENST00000441310.2:c.1520C>G	p.Ser507Ter	p.S507*	ENST00000441310	NM_000534.4	507	tCa/tGa																																																																															
TERT	7015	MSKCC	GRCh37	5	1293997	1293997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1440	276	825	0	ENST00000310581.5:c.1004C>T	p.Ser335Leu	p.S335L	ENST00000310581	NM_198253.2	335	tCa/tTa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637460	176637460	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0064036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1493	276	535	0	ENST00000439151.2:c.2060C>G	p.Ser687Cys	p.S687C	ENST00000439151	NM_022455.4	687	tCt/tGt																																																																															
SESN1	27244	MSKCC	GRCh37	6	109415043	109415043	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0064036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	245	544	0	ENST00000436639.2:c.234C>G	p.Phe78Leu	p.F78L	ENST00000436639	NM_014454.2	78	ttC/ttG																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0064037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			896	152	553	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0064037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1077	196	681	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11169377	11169377	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519916		P-0064037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	139	417	0	ENST00000361445.4:c.7498A>T	p.Ile2500Phe	p.I2500F	ENST00000361445	NM_004958.3	2500	Att/Ttt																																																																															
RARA	5914	MSKCC	GRCh37	17	38487556	38487556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1234	77	594	0	ENST00000254066.5:c.86C>T	p.Pro29Leu	p.P29L	ENST00000254066	NM_000964.3	29	cCc/cTc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141557661	141557661	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759579021		P-0064037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1094	84	593	0	ENST00000220592.5:c.1654G>A	p.Val552Met	p.V552M	ENST00000220592	NM_012154.3	552	Gtg/Atg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250842	153250842	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0064037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	47	344	0	ENST00000281708.4:c.1218G>A	p.Trp406Ter	p.W406*	ENST00000281708	NM_033632.3	406	tgG/tgA																																																																															
MED12	9968	MSKCC	GRCh37	X	70357078	70357078	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587778438		P-0064037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1085	116	690	0	ENST00000374080.3:c.5593A>G	p.Met1865Val	p.M1865V	ENST00000374080		1865	Atg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0064037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	71	310	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508437	106508437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0064037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			876	104	563	0	ENST00000359195.3:c.431C>T	p.Ser144Phe	p.S144F	ENST00000359195	NM_002649.2	144	tCc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112175765	112175770	+	frameshift_variant	Frame_Shift_Del	DEL	GCCACG	GCCACG	CCACA			P-0064037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			864	123	574	1	ENST00000257430.4:c.4474_4479delinsCCACA	p.Ala1492ProfsTer15	p.A1492Pfs*15	ENST00000257430	NM_000038.5	1492	GCCACG/CCACA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0064041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	146	614	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602764	10602764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	143	627	2	ENST00000171111.5:c.814C>T	p.Arg272Cys	p.R272C	ENST00000171111	NM_203500.1	272	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945084	151945084	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0064041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	22	334	0	ENST00000262189.6:c.2435T>G	p.Met812Arg	p.M812R	ENST00000262189	NM_170606.2	812	aTg/aGg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486248	8486248	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs768330226		P-0064041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	201	582	1	ENST00000356435.5:c.2569C>A	p.Arg857Ser	p.R857S	ENST00000356435		857	Cgt/Agt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123688	11123688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0064041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	133	522	0	ENST00000344626.4:c.2338G>A	p.Glu780Lys	p.E780K	ENST00000344626	NM_003072.3	780	Gag/Aag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302855	15302855	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	135	642	0	ENST00000263388.2:c.595G>T	p.Val199Leu	p.V199L	ENST00000263388	NM_000435.2	199	Gtg/Ttg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198263223	198263223	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0064041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	92	401	0	ENST00000335508.6:c.3096A>T	p.Gln1032His	p.Q1032H	ENST00000335508	NM_012433.2	1032	caA/caT																																																																															
PPARG	5468	MSKCC	GRCh37	3	12422987	12422987	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0064041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	107	419	0	ENST00000287820.6:c.477C>A	p.Cys159Ter	p.C159*	ENST00000287820	NM_015869.4	159	tgC/tgA																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748296	41748296	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0064041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	92	559	0	ENST00000226382.2:c.473G>T	p.Arg158Leu	p.R158L	ENST00000226382	NM_003924.3	158	cGc/cTc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673527	30673528	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0064041-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			847	162	841	0	ENST00000376406.3:c.3432_3433delinsTT	p.Gln1144_Ala1145delinsHisSer	p.Q1144_A1145delinsHS	ENST00000376406	NM_014641.2	1144	caGGcc/caTTcc																																																																															
ATRX	546	MSKCC	GRCh37	X	76937611	76937615	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTT	CTTTT	-			P-0020541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			51	119	205	0	ENST00000373344.5:c.3133_3137del	p.Lys1045Ter	p.K1045*	ENST00000373344	NM_000489.3	1045	AAAAGt/t																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577448	64577448	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			81	197	577	0	ENST00000337652.1:c.134A>C	p.Glu45Ala	p.E45A	ENST00000337652	NM_130803.2	45	gAg/gCg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134971	2134971	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			142	144	546	0	ENST00000219476.3:c.4513T>C	p.Tyr1505His	p.Y1505H	ENST00000219476	NM_000548.3	1505	Tac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882019		P-0025513-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			239	349	860	0	ENST00000269305.4:c.455dup	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0025513-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			312	69	586	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28622544	28622544	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs34172843		P-0025513-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			90	141	354	0	ENST00000241453.7:c.1073A>T	p.Asp358Val	p.D358V	ENST00000241453	NM_004119.2	358	gAt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112136997	112136997	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025513-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			157	114	465	0	ENST00000257430.4:c.751del	p.Glu251LysfsTer42	p.E251Kfs*42	ENST00000257430	NM_000038.5	251	Gaa/aa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81990400	81990400	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370547009		P-0025513-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			398	133	691	0	ENST00000359376.3:c.3671G>A	p.Arg1224His	p.R1224H	ENST00000359376	NM_002661.3	1224	cGc/cAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118355631	118355631	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025513-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			274	294	550	0	ENST00000534358.1:c.4273T>G	p.Ser1425Ala	p.S1425A	ENST00000534358	NM_005933.3	1425	Tct/Gct																																																																															
KDM5A	5927	MSKCC	GRCh37	12	461482	461482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025513-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			184	52	378	0	ENST00000399788.2:c.1038C>G	p.Ser346Arg	p.S346R	ENST00000399788	NM_001042603.1	346	agC/agG																																																																															
KDM5A	5927	MSKCC	GRCh37	12	472222	472222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025513-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			325	109	549	0	ENST00000399788.2:c.579G>T	p.Glu193Asp	p.E193D	ENST00000399788	NM_001042603.1	193	gaG/gaT																																																																															
KDM5A	5927	MSKCC	GRCh37	12	472238	472238	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025513-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			297	114	505	0	ENST00000399788.2:c.563T>G	p.Leu188Arg	p.L188R	ENST00000399788	NM_001042603.1	188	cTt/cGt																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679635	33679635	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147085136		P-0025513-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			378	116	731	0	ENST00000308377.4:c.2446G>A	p.Ala816Thr	p.A816T	ENST00000308377	NM_152270.3	816	Gca/Aca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0040096-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	39	215	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79968073	79968073	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760032154		P-0040096-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			473	38	414	0	ENST00000265081.6:c.803G>A	p.Arg268Gln	p.R268Q	ENST00000265081	NM_002439.4	268	cGa/cAa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43714125	43714125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040096-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			862	74	805	0	ENST00000382044.4:c.4028G>A	p.Arg1343Lys	p.R1343K	ENST00000382044	NM_001141980.1	1343	aGa/aAa																																																																															
RARA	5914	MSKCC	GRCh37	17	38506081	38506081	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040096-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			845	63	815	0	ENST00000254066.5:c.373C>G	p.His125Asp	p.H125D	ENST00000254066	NM_000964.3	125	Cac/Gac																																																																															
LATS1	9113	MSKCC	GRCh37	6	150016276	150016276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040096-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			462	44	433	0	ENST00000253339.5:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000253339		144	Caa/Taa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120459176	120459176	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040096-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1067	80	998	0	ENST00000256646.2:c.6169G>C	p.Asp2057His	p.D2057H	ENST00000256646	NM_024408.3	2057	Gac/Cac																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588796	69588796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040096-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1043	62	599	0	ENST00000168712.1:c.440G>T	p.Gly147Val	p.G147V	ENST00000168712	NM_002007.2	147	gGc/gTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540650	187540650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040096-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			961	75	927	0	ENST00000441802.2:c.7090G>T	p.Asp2364Tyr	p.D2364Y	ENST00000441802	NM_005245.3	2364	Gat/Tat																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983350	149983350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040096-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			614	46	591	0	ENST00000253339.5:c.2908C>T	p.His970Tyr	p.H970Y	ENST00000253339		970	Cac/Tac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0055106-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			373	408	733	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0055106-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			50	269	596	0	ENST00000269305.4:c.377del	p.Tyr126SerfsTer44	p.Y126Sfs*44	ENST00000269305	NM_001126112.2	126	tAc/tc																																																																															
PGR	5241	MSKCC	GRCh37	11	100999413	100999413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055106-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			665	35	793	0	ENST00000325455.5:c.389G>A	p.Ser130Asn	p.S130N	ENST00000325455	NM_001202474.3	130	aGc/aAc																																																																															
MDM2	4193	MSKCC	GRCh37	12	69218417	69218417	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055106-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			328	21	424	0	ENST00000462284.1:c.509C>G	p.Ala170Gly	p.A170G	ENST00000462284	NM_002392.5	170	gCa/gGa																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045982	26045982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055106-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			833	131	717	0	ENST00000540144.1:c.344C>T	p.Ala115Val	p.A115V	ENST00000540144	NM_003531.2	115	gCt/gTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518241	8518241	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0055106-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			273	204	516	0	ENST00000356435.5:c.1150A>C	p.Ser384Arg	p.S384R	ENST00000356435		384	Agt/Cgt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518307	8518307	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0055106-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			302	228	446	0	ENST00000356435.5:c.1084A>C	p.Asn362His	p.N362H	ENST00000356435		362	Aac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs967461896		P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			207	1241	385	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286237	66286238	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			347	167	521	0	ENST00000273854.3:c.1448dup	p.Asn483LysfsTer21	p.N483Kfs*21	ENST00000273854	NM_004439.5	483	aac/aaAc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288296	33288296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			917	332	511	0	ENST00000374542.5:c.1112G>A	p.Arg371Gln	p.R371Q	ENST00000374542	NM_001141970.1	371	cGg/cAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974783	21974783	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876658556		P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			239	1534	769	0	ENST00000304494.5:c.44G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tGg/tAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030469	47030469	+	intron_variant	Intron	SNP	C	C	T			P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			177	271	304	0	ENST00000329236.7:c.201+1572C>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
PIK3CD	5293	MSKCC	GRCh37	1	9775933	9775933	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754053878		P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			458	259	267	0	ENST00000377346.4:c.397G>A	p.Asp133Asn	p.D133N	ENST00000377346	NM_005026.3	133	Gac/Aac																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495609	56495609	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs745487835		P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	320	622	0	ENST00000267101.3:c.3799C>T	p.Arg1267Ter	p.R1267*	ENST00000267101	NM_001982.3	1267	Cga/Tga																																																																															
ETV6	2120	MSKCC	GRCh37	12	11992125	11992125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			891	221	515	0	ENST00000396373.4:c.215G>T	p.Trp72Leu	p.W72L	ENST00000396373	NM_001987.4	72	tGg/tTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41565575	41565575	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			429	159	253	0	ENST00000263253.7:c.4241A>C	p.Tyr1414Ser	p.Y1414S	ENST00000263253	NM_001429.3	1414	tAt/tCt																																																																															
STK11	6794	MSKCC	GRCh37	19	1219384	1219384	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1041	267	218	0	ENST00000326873.7:c.436A>G	p.Lys146Glu	p.K146E	ENST00000326873	NM_000455.4	146	Aag/Gag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100390	27100390	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			191	518	389	0	ENST00000324856.7:c.4101+1G>T		p.X1367_splice	ENST00000324856	NM_006015.4	1367																																																																																
NUF2	83540	MSKCC	GRCh37	1	163310209	163310209	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			473	168	358	0	ENST00000271452.3:c.662A>C	p.Lys221Thr	p.K221T	ENST00000271452	NM_145697.2	221	aAg/aCg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332392	70332392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			410	234	487	0	ENST00000373644.4:c.297C>A	p.Cys99Ter	p.C99*	ENST00000373644	NM_030625.2	99	tgC/tgA																																																																															
DIS3	22894	MSKCC	GRCh37	13	73352362	73352363	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			563	183	613	0	ENST00000377767.4:c.542_543del	p.Lys181ArgfsTer14	p.K181Rfs*14	ENST00000377767	NM_014953.3	181	aAA/a																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103520608	103520608	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			410	124	381	0	ENST00000355739.4:c.2678+1G>C		p.X893_splice	ENST00000355739	NM_000123.3	893																																																																																
SLX4	84464	MSKCC	GRCh37	16	3646219	3646219	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			641	491	314	0	ENST00000294008.3:c.1859G>C	p.Arg620Thr	p.R620T	ENST00000294008	NM_032444.2	620	aGg/aCg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37680974	37680974	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1357617308		P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			2869	327	379	0	ENST00000447079.4:c.3143G>A	p.Arg1048Gln	p.R1048Q	ENST00000447079	NM_015083.1	1048	cGa/cAa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58725343	58725343	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			573	217	451	0	ENST00000305921.3:c.917A>G	p.His306Arg	p.H306R	ENST00000305921	NM_003620.3	306	cAc/cGc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761289	59761290	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			684	250	542	0	ENST00000259008.2:c.3117_3118del	p.Lys1040AspfsTer4	p.K1040Dfs*4	ENST00000259008	NM_032043.2	1039	gaGAag/gaag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222839	36222840	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	295	318	0	ENST00000222270.7:c.5471_5472del	p.Thr1824ArgfsTer9	p.T1824Rfs*9	ENST00000222270	NM_014727.1	1823	gAC/g																																																																															
SOS1	6654	MSKCC	GRCh37	2	39212997	39212997	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			475	642	734	0	ENST00000402219.2:c.3970C>A	p.Pro1324Thr	p.P1324T	ENST00000402219	NM_005633.3	1324	Cca/Aca																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99152276	99152276	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			658	168	347	0	ENST00000074304.5:c.355G>C	p.Val119Leu	p.V119L	ENST00000074304	NM_001134224.1	119	Gtg/Ctg																																																																															
CASP8	841	MSKCC	GRCh37	2	202136239	202136239	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			522	164	421	0	ENST00000358485.4:c.483G>T	p.Arg161Ser	p.R161S	ENST00000358485	NM_001080125.1	161	agG/agT																																																																															
TERT	7015	MSKCC	GRCh37	5	1294481	1294481	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs145958962		P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1183	306	385	0	ENST00000310581.5:c.520C>G	p.Pro174Ala	p.P174A	ENST00000310581	NM_198253.2	174	Ccg/Gcg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444452	50444452	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			787	241	512	1	ENST00000331340.3:c.384del	p.Asn130MetfsTer63	p.N130Mfs*63	ENST00000331340	NM_006060.4	128	Ggg/gg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133868	38133868	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			949	273	511	0	ENST00000317025.8:c.4018G>C	p.Asp1340His	p.D1340H	ENST00000317025	NM_023034.1	1340	Gac/Cac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8633389	8633390	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0058783-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			152	810	520	1	ENST00000356435.5:c.279_280delinsCT	p.Glu93_Ala94delinsAspSer	p.E93_A94delinsDS	ENST00000356435		93	gaGGcc/gaCTcc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685289	89685289	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0059254-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			129	11	260	0	ENST00000371953.3:c.188del	p.Asn63ThrfsTer36	p.N63Tfs*36	ENST00000371953	NM_000314.4	62	Aaa/aa																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45795072	45795072	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369410616		P-0059254-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			468	27	478	0	ENST00000372115.3:c.1514G>A	p.Arg505Gln	p.R505Q	ENST00000372115	NM_001048171.1	505	cGg/cAg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30325733	30325733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059254-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			220	15	325	0	ENST00000322652.5:c.1931G>T	p.Gly644Val	p.G644V	ENST00000322652	NM_015355.2	644	gGa/gTa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911032	32911032	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060502457		P-0059254-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			160	13	426	0	ENST00000380152.3:c.2540G>A	p.Arg847Lys	p.R847K	ENST00000380152		847	aGa/aAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332654	153332654	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs767856434		P-0059254-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			410	36	522	0	ENST00000281708.4:c.302A>G	p.Asp101Gly	p.D101G	ENST00000281708	NM_033632.3	101	gAt/gGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433387	49433387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059254-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			452	31	539	0	ENST00000301067.7:c.8060G>A	p.Arg2687Gln	p.R2687Q	ENST00000301067	NM_003482.3	2687	cGa/cAa																																																																															
FYN	2534	MSKCC	GRCh37	6	111983015	111983015	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059254-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			465	34	494	0	ENST00000368678.4:c.1532A>T	p.Glu511Val	p.E511V	ENST00000368678		511	gAg/gTg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162743374	162743374	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			180	97	543	0	ENST00000367921.3:c.1844A>T	p.Asn615Ile	p.N615I	ENST00000367921	NM_006182.2	615	aAc/aTc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246021967	246021967	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	166	421	0	ENST00000388985.4:c.907G>T	p.Glu303Ter	p.E303*	ENST00000388985		303	Gag/Tag																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649959	88649959	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			520	147	477	0	ENST00000372037.3:c.208G>T	p.Asp70Tyr	p.D70Y	ENST00000372037	NM_004329.2	70	Gat/Tat																																																																															
LMO1	4004	MSKCC	GRCh37	11	8284889	8284889	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			130	95	523	0	ENST00000335790.3:c.21G>C	p.Glu7Asp	p.E7D	ENST00000335790	NM_002315.2	7	gaG/gaC																																																																															
CTR9	9646	MSKCC	GRCh37	11	10789413	10789413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			217	61	515	0	ENST00000361367.2:c.1747C>T	p.Pro583Ser	p.P583S	ENST00000361367	NM_014633.3	583	Cct/Tct																																																																															
PGR	5241	MSKCC	GRCh37	11	100999369	100999369	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			155	127	749	1	ENST00000325455.5:c.433C>A	p.Pro145Thr	p.P145T	ENST00000325455	NM_001202474.3	145	Ccc/Acc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95566220	95566220	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs767112987		P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			226	160	544	0	ENST00000343455.3:c.4103G>T	p.Arg1368Leu	p.R1368L	ENST00000343455	NM_177438.2	1368	cGc/cTc																																																																															
MGA	23269	MSKCC	GRCh37	15	42052726	42052726	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			76	68	422	0	ENST00000219905.7:c.7397G>T	p.Arg2466Leu	p.R2466L	ENST00000219905	NM_001164273.1	2466	cGa/cTa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43708587	43708587	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199716902		P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			91	118	620	0	ENST00000382044.4:c.4709C>T	p.Ser1570Phe	p.S1570F	ENST00000382044	NM_001141980.1	1570	tCt/tTt																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029314	14029314	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			93	107	667	0	ENST00000311895.7:c.1525G>T	p.Asp509Tyr	p.D509Y	ENST00000311895	NM_005236.2	509	Gat/Tat																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349250	89349250	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			103	131	609	0	ENST00000301030.4:c.3700A>G	p.Asn1234Asp	p.N1234D	ENST00000301030	NM_001256183.1	1234	Aat/Gat																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836608	89836608	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			134	120	644	0	ENST00000389301.3:c.2282T>C	p.Val761Ala	p.V761A	ENST00000389301	NM_000135.2	761	gTg/gCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			140	242	691	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29546086	29546086	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057518134		P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			132	149	606	0	ENST00000358273.4:c.1591C>T	p.Gln531Ter	p.Q531*	ENST00000358273	NM_001042492.2	531	Caa/Taa																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61324563	61324563	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			42	40	565	0	ENST00000283752.5:c.553C>A	p.Gln185Lys	p.Q185K	ENST00000283752	NM_006919.2	185	Cag/Aag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285159	15285159	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			188	68	713	0	ENST00000263388.2:c.4456C>T	p.Gln1486Ter	p.Q1486*	ENST00000263388	NM_000435.2	1486	Cag/Tag																																																																															
CIC	23152	MSKCC	GRCh37	19	42791480	42791480	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			167	252	738	0	ENST00000575354.2:c.461C>A	p.Ser154Tyr	p.S154Y	ENST00000575354	NM_015125.3	154	tCc/tAc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719697	190719697	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			79	47	471	0	ENST00000441310.2:c.1699A>T	p.Ser567Cys	p.S567C	ENST00000441310	NM_000534.4	567	Agc/Tgc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62303948	62303948	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	T			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	119	627	0	ENST00000482936.1:c.739G>T	p.Val247Leu	p.V247L	ENST00000482936		247	Gtg/Ttg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326953	62326953	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	106	679	0	ENST00000482936.1:c.3772C>T	p.Pro1258Ser	p.P1258S	ENST00000482936		1258	Cct/Tct																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441289	52441289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	155	856	0	ENST00000460680.1:c.481G>T	p.Ala161Ser	p.A161S	ENST00000460680	NM_004656.3	161	Gca/Tca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541611	187541611	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			151	125	802	0	ENST00000441802.2:c.6129G>T	p.Gln2043His	p.Q2043H	ENST00000441802	NM_005245.3	2043	caG/caT																																																																															
TERT	7015	MSKCC	GRCh37	5	1295247	1295247	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			177	32	497	0				ENST00000310581	NM_198253.2																																																																																	
MSH3	4437	MSKCC	GRCh37	5	79966001	79966001	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			80	121	590	0	ENST00000265081.6:c.665A>T	p.Asn222Ile	p.N222I	ENST00000265081	NM_002439.4	222	aAc/aTc																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31238896	31238896	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			246	59	413	0	ENST00000376228.5:c.573G>A	p.Trp191Ter	p.W191*	ENST00000376228	NM_002117.5	191	tgG/tgA																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444288	50444288	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			190	80	672	0	ENST00000331340.3:c.218T>C	p.Met73Thr	p.M73T	ENST00000331340	NM_006060.4	73	aTg/aCg																																																																															
POT1	25913	MSKCC	GRCh37	7	124465305	124465306	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			39	27	416	0	ENST00000357628.3:c.1792_1792+1delinsTT		p.X598_splice	ENST00000357628	NM_015450.2	598																																																																																
CDKN2B-AS1	100048912	MSKCC	GRCh37	9	21993396	21994238	+	upstream_gene_variant	5'Flank	DEL	GACTAAAATACTATCAGTTGGGATTTCTCAGGAACAGTTCTACAGTTCTGTCGTTTGCTAAACATACGAGCATTGTCCCGAGCAGTTTCAATCACTCAGGCCGCCGGACCTCTACCTCTAACTCACAAAGAAAGCCCATTTCCCTGTTGGCTGCAAAACTCCCCCAAGAAGCAAGTGCTTGCTCCTCGCAGCAGTAACTGATCCTACGATCCTTGTTAGCATTTCAGGAAGTCGCTGCCTGCGTGCCCCGTATCTCACGGGTCCTCCACTCTCCTGGAAGGTGGGAGAGGGTGACCCCGCCGGGAGGCTGGGGAGAAAAAAGGCCGCCTCCAGAAAACTTAGATGGTTAGCAATAATTCTCCCCAAGGAGAAAGAAAGTGTGCTTGAAATACACCTTTCCTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTAGTCATTCCCACCCAGGATATTCGGGACTCACTGACTTCTGAGGTGGGTTTAGAAGCTCTGTTCGCCTCAGTTTCCCACGATTGAGGGGCTGTGTGAAGGGAGGTCCAGGTTCAATGGTACTGCGAGAACCACATGTCTAAGTCGTTGTAACCCGAATGGGGAAGCCTCCACCGGCGGTTATCTCCTCCTCCTCCTAGCCTGGGCTAGAGACGAATTATCTGTTTACGAAATCACACCAAACAAAACAAGTGCCGAATGCGCCCCGGACTTTTCGAGGGCCTTTCCTACCTGGTCTTCTAGGAAGCGGCTGCTGCCCTAGACGCTGGCTCCTCAGTAGCATCAGCACGAGGGCCACAGCGGCGGGCGCCCCTGGCGCTGCCCACTCCCCC	GACTAAAATACTATCAGTTGGGATTTCTCAGGAACAGTTCTACAGTTCTGTCGTTTGCTAAACATACGAGCATTGTCCCGAGCAGTTTCAATCACTCAGGCCGCCGGACCTCTACCTCTAACTCACAAAGAAAGCCCATTTCCCTGTTGGCTGCAAAACTCCCCCAAGAAGCAAGTGCTTGCTCCTCGCAGCAGTAACTGATCCTACGATCCTTGTTAGCATTTCAGGAAGTCGCTGCCTGCGTGCCCCGTATCTCACGGGTCCTCCACTCTCCTGGAAGGTGGGAGAGGGTGACCCCGCCGGGAGGCTGGGGAGAAAAAAGGCCGCCTCCAGAAAACTTAGATGGTTAGCAATAATTCTCCCCAAGGAGAAAGAAAGTGTGCTTGAAATACACCTTTCCTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTAGTCATTCCCACCCAGGATATTCGGGACTCACTGACTTCTGAGGTGGGTTTAGAAGCTCTGTTCGCCTCAGTTTCCCACGATTGAGGGGCTGTGTGAAGGGAGGTCCAGGTTCAATGGTACTGCGAGAACCACATGTCTAAGTCGTTGTAACCCGAATGGGGAAGCCTCCACCGGCGGTTATCTCCTCCTCCTCCTAGCCTGGGCTAGAGACGAATTATCTGTTTACGAAATCACACCAAACAAAACAAGTGCCGAATGCGCCCCGGACTTTTCGAGGGCCTTTCCTACCTGGTCTTCTAGGAAGCGGCTGCTGCCCTAGACGCTGGCTCCTCAGTAGCATCAGCACGAGGGCCACAGCGGCGGGCGCCCCTGGCGCTGCCCACTCCCCC	-			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1	85	0	0				ENST00000428597																																																																																		
BCOR	54880	MSKCC	GRCh37	X	39937149	39937149	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			50	121	296	0	ENST00000378444.4:c.34C>G	p.His12Asp	p.H12D	ENST00000378444	NM_001123385.1	12	Cac/Gac																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152861591	152861591	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0060341-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			66	134	359	0	ENST00000406277.2:c.161A>T	p.His54Leu	p.H54L	ENST00000406277	NM_152274.4	54	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660548		P-0062055-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			646	56	477	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211899	36211899	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062055-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			672	42	456	0	ENST00000222270.7:c.1656del	p.Lys553AsnfsTer52	p.K553Nfs*52	ENST00000222270	NM_014727.1	550	gaC/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0062055-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			405	29	218	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RARA	5914	MSKCC	GRCh37	17	38512288	38512289	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0062055-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			594	33	355	0	ENST00000254066.5:c.1201dup	p.Glu401GlyfsTer45	p.E401Gfs*45	ENST00000254066	NM_000964.3	400	atg/atGg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610198	10610198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062301-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			333	114	501	0	ENST00000171111.5:c.512G>T	p.Cys171Phe	p.C171F	ENST00000171111	NM_203500.1	171	tGc/tTc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117718277	117718277	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1298952570		P-0062301-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			228	81	322	0	ENST00000368508.3:c.580C>T	p.Pro194Ser	p.P194S	ENST00000368508	NM_002944.2	194	Cct/Tct																																																																															
BRAF	673	MSKCC	GRCh37	7	140481417	140481417	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913348		P-0062301-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			272	66	271	0	ENST00000288602.6:c.1391G>A	p.Gly464Glu	p.G464E	ENST00000288602	NM_004333.4	464	gGa/gAa																																																																															
MGA	23269	MSKCC	GRCh37	15	42050038	42050038	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0062301-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			188	55	258	0	ENST00000219905.7:c.7191+1G>T		p.X2397_splice	ENST00000219905	NM_001164273.1	2397																																																																																
NTRK3	4916	MSKCC	GRCh37	15	88476310	88476310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062301-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			333	90	392	0	ENST00000360948.2:c.1822G>T	p.Gly608Cys	p.G608C	ENST00000360948	NM_001012338.2	608	Ggc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220701	1220701	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730881976		P-0062301-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			270	112	430	0	ENST00000326873.7:c.719C>G	p.Ser240Trp	p.S240W	ENST00000326873	NM_000455.4	240	tCg/tGg																																																																															
USP8	9101	MSKCC	GRCh37	15	50788274	50788274	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062301-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	71	284	0	ENST00000307179.4:c.2888C>G	p.Thr963Arg	p.T963R	ENST00000307179		963	aCa/aGa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171694	36171694	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0062301-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	128	442	0	ENST00000300305.3:c.871A>T	p.Ile291Phe	p.I291F	ENST00000300305		291	Att/Ttt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161789	47161789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062301-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	90	411	0	ENST00000409792.3:c.4337G>T	p.Gly1446Val	p.G1446V	ENST00000409792	NM_014159.6	1446	gGg/gTg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117874128	117874128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062301-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			234	74	273	0	ENST00000297338.2:c.326C>T	p.Thr109Ile	p.T109I	ENST00000297338	NM_006265.2	109	aCt/aTt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399919	139399919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062301-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			468	118	542	0	ENST00000277541.6:c.4429G>T	p.Gly1477Cys	p.G1477C	ENST00000277541	NM_017617.3	1477	Ggt/Tgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038830	47038830	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062301-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			326	110	429	0	ENST00000329236.7:c.608del	p.Gly203GlufsTer28	p.G203Efs*28	ENST00000329236	NM_001204466.1	202	caG/ca																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0062309-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			573	70	470	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0062309-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			346	40	309	0	ENST00000256078.4:c.34_35delinsCT	p.Gly12Leu	p.G12L	ENST00000256078	NM_033360.2	12	GGt/CTt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231302	46231302	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0062309-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			445	78	442	0	ENST00000334344.6:c.1142T>A	p.Leu381His	p.L381H	ENST00000334344	NM_152641.2	381	cTt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579585	7579586	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0062309-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			491	68	520	0	ENST00000269305.4:c.101_102insTT	p.Leu35SerfsTer10	p.L35Sfs*10	ENST00000269305	NM_001126112.2	34	ccc/ccTTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509097	66509097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062309-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			332	41	330	0	ENST00000273854.3:c.230C>A	p.Ala77Asp	p.A77D	ENST00000273854	NM_004439.5	77	gCt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579381	7579381	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	600	799	0	ENST00000269305.4:c.306del	p.Tyr103ThrfsTer20	p.Y103Tfs*20	ENST00000269305	NM_001126112.2	102	acC/ac																																																																															
RB1	5925	MSKCC	GRCh37	13	48881488	48881489	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0062384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	318	427	0	ENST00000267163.4:c.219_220dup	p.Ala74GlufsTer4	p.A74Efs*4	ENST00000267163	NM_000321.2	70	-/AG																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259652	89259653	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0062384-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	35	554	0	ENST00000336596.2:c.798_799del	p.Gly267PhefsTer17	p.G267Ffs*17	ENST00000336596	NM_005233.5	266	AGa/a																																																																															
BLM	641	MSKCC	GRCh37	15	91312689	91312689	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs765143263		P-0062822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			406	128	366	0	ENST00000355112.3:c.2428G>C	p.Asp810His	p.D810H	ENST00000355112	NM_000057.2	810	Gat/Cat																																																																															
IL10	3586	MSKCC	GRCh37	1	206941996	206941996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			521	109	359	0	ENST00000423557.1:c.522G>A	p.Met174Ile	p.M174I	ENST00000423557	NM_000572.2	174	atG/atA																																																																															
STK11	6794	MSKCC	GRCh37	19	1219345	1219346	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-	rs587782424		P-0062822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			399	173	528	0	ENST00000326873.7:c.402_403del	p.Cys134TrpfsTer28	p.C134Wfs*28	ENST00000326873	NM_000455.4	133	GTg/g																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287239	33287239	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			626	132	515	0	ENST00000374542.5:c.1858C>G	p.His620Asp	p.H620D	ENST00000374542	NM_001141970.1	620	Cac/Gac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984130	2984130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			454	119	491	0	ENST00000396946.4:c.400G>A	p.Glu134Lys	p.E134K	ENST00000396946	NM_032415.4	134	Gag/Aag																																																																															
BARD1	580	MSKCC	GRCh37	2	215674170	215674170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			450	48	481	0	ENST00000260947.4:c.124G>A	p.Asp42Asn	p.D42N	ENST00000260947	NM_000465.2	42	Gac/Aac																																																																															
NF1	4763	MSKCC	GRCh37	17	29528086	29528086	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0062822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			193	41	152	0	ENST00000358273.4:c.1094C>G	p.Ser365Ter	p.S365*	ENST00000358273	NM_001042492.2	365	tCa/tGa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602819	10602819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			437	175	588	0	ENST00000171111.5:c.759del	p.Lys254SerfsTer23	p.K254Sfs*23	ENST00000171111	NM_203500.1	253	gtC/gt																																																																															
ATM	472	MSKCC	GRCh37	11	108218059	108218059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			409	104	375	0	ENST00000278616.4:c.8638G>A	p.Glu2880Lys	p.E2880K	ENST00000278616	NM_000051.3	2880	Gag/Aag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420191	88420191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			550	155	447	0	ENST00000360948.2:c.2495C>G	p.Pro832Arg	p.P832R	ENST00000360948	NM_001012338.2	832	cCa/cGa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350921	89350921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			490	133	388	0	ENST00000301030.4:c.2029G>A	p.Asp677Asn	p.D677N	ENST00000301030	NM_001256183.1	677	Gat/Aat																																																																															
NF1	4763	MSKCC	GRCh37	17	29664427	29664427	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0062822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			396	121	388	0	ENST00000358273.4:c.6469del	p.Ser2157HisfsTer43	p.S2157Hfs*43	ENST00000358273	NM_001042492.2	2157	Tca/ca																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805846	46805846	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			591	154	622	0	ENST00000290295.7:c.110del	p.Pro37GlnfsTer6	p.P37Qfs*6	ENST00000290295	NM_006361.5	37	cCa/ca																																																																															
CASP8	841	MSKCC	GRCh37	2	202137638	202137638	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062822-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			540	139	495	0	ENST00000358485.4:c.745G>C	p.Glu249Gln	p.E249Q	ENST00000358485	NM_001080125.1	249	Gaa/Caa																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0063251-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			275	250	494	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0063251-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	101	416	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0063251-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			256	89	441	1	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																																
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0063251-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	71	531	2	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153245500	153245500	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1304288466		P-0063251-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	58	489	0	ENST00000281708.4:c.1691G>A	p.Arg564His	p.R564H	ENST00000281708	NM_033632.3	564	cGt/cAt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696682	47696682	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0063251-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			340	123	552	0	ENST00000347630.2:c.266T>A	p.Leu89Ter	p.L89*	ENST00000347630	NM_001007230.1	89	tTa/tAa																																																																															
FH	2271	MSKCC	GRCh37	1	241675407	241675407	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200343823		P-0063251-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			488	35	388	0	ENST00000366560.3:c.415G>A	p.Val139Met	p.V139M	ENST00000366560	NM_000143.3	139	Gtg/Atg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130514	29130514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730881696		P-0063251-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			469	76	570	1	ENST00000328354.6:c.196G>A	p.Val66Met	p.V66M	ENST00000328354	NM_007194.3	66	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579315	7579324	+	frameshift_variant	Frame_Shift_Del	DEL	GCAAGTCACA	GCAAGTCACA	TGCCT			P-0063251-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			312	123	565	0	ENST00000269305.4:c.363_372delinsAGGCA	p.Val122GlyfsTer25	p.V122Gfs*25	ENST00000269305	NM_001126112.2	121	tcTGTGACTTGC/tcAGGCA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0063494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	251	494	4	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0063494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			89	51	231	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587777894		P-0063494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	164	517	4	ENST00000361445.4:c.6644C>T	p.Ser2215Phe	p.S2215F	ENST00000361445	NM_004958.3	2215	tCt/tTt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0063494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	258	634	3	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727453	66727453	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397516790		P-0063494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	356	497	4	ENST00000307102.5:c.169A>G	p.Lys57Glu	p.K57E	ENST00000307102	NM_002755.3	57	Aag/Gag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099403	157099432	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAGCAGCAACAGCAG	CAGCAGCAGCAGCAGCAGCAGCAACAGCAG	-			P-0063494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			875	194	763	0	ENST00000346085.5:c.357_386del	p.Gln122_Gln131del	p.Q122_Q131del	ENST00000346085	NM_020732.3	114	CAGCAGCAGCAGCAGCAGCAGCAACAGCAG/-																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936103	178936103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	73	300	1	ENST00000263967.3:c.1645G>C	p.Asp549His	p.D549H	ENST00000263967	NM_006218.2	549	Gat/Cat																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710590	114710610	+	inframe_deletion	In_Frame_Del	DEL	CGAACAGGAGGAGAAGAGCTC	CGAACAGGAGGAGAAGAGCTC	-			P-0063494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	177	624	0	ENST00000543371.1:c.79_99del	p.Gln27_Glu33del	p.Q27_E33del	ENST00000543371	NM_001198531.1	25	ggCGAACAGGAGGAGAAGAGCTCc/ggc																																																																															
ATRX	546	MSKCC	GRCh37	X	76952101	76952101	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	15	355	0	ENST00000373344.5:c.334T>C	p.Ser112Pro	p.S112P	ENST00000373344	NM_000489.3	112	Tca/Cca																																																																															
APC	324	MSKCC	GRCh37	5	112103081	112103082	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0063494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	98	350	0	ENST00000257430.4:c.421_422dup	p.Ser142GlyfsTer29	p.S142Gfs*29	ENST00000257430	NM_000038.5	139	aaa/aaAGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0063510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	364	697	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152083	11152083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	158	704	1	ENST00000344626.4:c.4271C>T	p.Pro1424Leu	p.P1424L	ENST00000344626	NM_003072.3	1424	cCg/cTg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38960603	38960603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	95	502	1	ENST00000357387.3:c.1748C>A	p.Pro583His	p.P583H	ENST00000357387	NM_152756.3	583	cCc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175205	112175205	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	323	562	0	ENST00000257430.4:c.3914del	p.Ala1305GlufsTer3	p.A1305Efs*3	ENST00000257430	NM_000038.5	1305	gCa/ga																																																																															
SETD8	387893	MSKCC	GRCh37	12	123875223	123875223	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202048118		P-0063512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	43	207	0	ENST00000330479.4:c.179C>T	p.Pro60Leu	p.P60L	ENST00000330479	NM_020382.3	60	cCg/cTg																																																																															
BLM	641	MSKCC	GRCh37	15	91292708	91292708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	235	591	0	ENST00000355112.3:c.210C>A	p.Asp70Glu	p.D70E	ENST00000355112	NM_000057.2	70	gaC/gaA																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627892	37627892	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	118	676	0	ENST00000447079.4:c.1811del	p.Pro604LeufsTer6	p.P604Lfs*6	ENST00000447079	NM_015083.1	603	Ccc/cc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37676292	37676293	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0063512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	276	493	0	ENST00000447079.4:c.3049_3050del	p.Ser1017ArgfsTer4	p.S1017Rfs*4	ENST00000447079	NM_015083.1	1016	cAG/c																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0063513-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			23	59	153	1	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944568	71944568	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0063513-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			16	29	590	0	ENST00000298229.2:c.2122+2T>A		p.X708_splice	ENST00000298229	NM_001567.3	708																																																																																
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775623976		P-0063564-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			495	58	422	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0063564-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			318	58	340	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133256780	133256780	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063564-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			485	50	384	0	ENST00000320574.5:c.314A>C	p.Tyr105Ser	p.Y105S	ENST00000320574	NM_006231.2	105	tAc/tCc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231736	66231736	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063564-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	57	307	0	ENST00000273854.3:c.1964C>A	p.Thr655Asn	p.T655N	ENST00000273854	NM_004439.5	655	aCc/aAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0063632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	42	203	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0063632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	79	849	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
POLE	5426	MSKCC	GRCh37	12	133210876	133210876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201273415		P-0063632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	74	706	1	ENST00000320574.5:c.5900C>T	p.Ala1967Val	p.A1967V	ENST00000320574	NM_006231.2	1967	gCg/gTg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041617	14041617	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	44	574	0	ENST00000311895.7:c.2164A>G	p.Met722Val	p.M722V	ENST00000311895	NM_005236.2	722	Atg/Gtg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859668	151859668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			812	85	784	0	ENST00000262189.6:c.10994G>A	p.Gly3665Asp	p.G3665D	ENST00000262189	NM_170606.2	3665	gGc/gAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209595	98209595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746022197		P-0063632-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	61	776	0	ENST00000331920.6:c.3943C>T	p.Pro1315Ser	p.P1315S	ENST00000331920	NM_000264.3	1315	Ccc/Tcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416552	49416552	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0063637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	181	672	0	ENST00000301067.7:c.16159C>T	p.Gln5387Ter	p.Q5387*	ENST00000301067	NM_003482.3	5387	Cag/Tag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852468	63852468	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0063637-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	148	594	1	ENST00000279873.7:c.3246T>G	p.Tyr1082Ter	p.Y1082*	ENST00000279873	NM_032199.2	1082	taT/taG																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0063731-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			311	91	382	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0063731-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			233	174	363	0	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0063731-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			129	74	254	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457640	67457640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063731-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	362	449	0	ENST00000327367.4:c.455del	p.Pro152HisfsTer34	p.P152Hfs*34	ENST00000327367	NM_005902.3	150	ttC/tt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933533	39933533	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0063731-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			513	161	465	0	ENST00000378444.4:c.1066G>T	p.Glu356Ter	p.E356*	ENST00000378444	NM_001123385.1	356	Gag/Tag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86628433	86628437	+	frameshift_variant	Frame_Shift_Del	DEL	TTACT	TTACT	-			P-0063731-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			117	69	263	0	ENST00000274376.6:c.806_810del	p.Leu269ProfsTer11	p.L269Pfs*11	ENST00000274376	NM_002890.2	268	TTACTt/t																																																																															
CDH1	999	MSKCC	GRCh37	16	68867304	68867304	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063731-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			366	146	398	0	ENST00000261769.5:c.2551T>A	p.Ser851Thr	p.S851T	ENST00000261769	NM_004360.3	851	Tca/Aca																																																																															
MGA	23269	MSKCC	GRCh37	15	41961472	41961472	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063731-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			218	227	362	0	ENST00000219905.7:c.380T>G	p.Ile127Arg	p.I127R	ENST00000219905	NM_001164273.1	127	aTa/aGa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88670434	88670434	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063731-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			183	222	247	0	ENST00000360948.2:c.1252C>A	p.Pro418Thr	p.P418T	ENST00000360948	NM_001012338.2	418	Cct/Act																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678448	88678449	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0063731-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			243	237	405	0	ENST00000360948.2:c.1087dup	p.Leu363ProfsTer44	p.L363Pfs*44	ENST00000360948	NM_001012338.2	363	ctg/cCtg																																																																															
NF1	4763	MSKCC	GRCh37	17	29483049	29483049	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063731-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			204	87	293	0	ENST00000358273.4:c.109G>T	p.Glu37Ter	p.E37*	ENST00000358273	NM_001042492.2	37	Gag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29490366	29490366	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063731-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			302	87	303	0	ENST00000358273.4:c.452del	p.Asn151MetfsTer14	p.N151Mfs*14	ENST00000358273	NM_001042492.2	151	Aat/at																																																																															
ALB	213	MSKCC	GRCh37	4	74285356	74285356	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0063731-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			268	183	250	0	ENST00000295897.4:c.1785G>T	p.Glu595Asp	p.E595D	ENST00000295897	NM_000477.5	595	gaG/gaT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032526	47032526	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0063731-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			376	160	372	0	ENST00000329236.7:c.202-1G>T		p.X68_splice	ENST00000329236	NM_001204466.1	68																																																																																
ARAF	369	MSKCC	GRCh37	X	47426499	47426499	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063731-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			449	203	509	0	ENST00000377045.4:c.842G>T	p.Arg281Leu	p.R281L	ENST00000377045	NM_001654.4	281	cGg/cTg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845332	42845332	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AA			P-0063731-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			395	186	471	0	ENST00000398585.3:c.930delinsTT	p.His311SerfsTer30	p.H311Sfs*30	ENST00000398585	NM_001135099.1	310	ctG/ctTT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0063810-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	208	514	1	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175352	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0063810-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	158	390	0	ENST00000257430.4:c.4062_4063del	p.Ser1355PhefsTer19	p.S1355Ffs*19	ENST00000257430	NM_000038.5	1354	TTt/t																																																																															
APC	324	MSKCC	GRCh37	5	112173835	112173838	+	frameshift_variant	Frame_Shift_Del	DEL	AGAT	AGAT	-			P-0063810-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	68	385	0	ENST00000257430.4:c.2547_2550del	p.Asp849GlufsTer11	p.D849Efs*11	ENST00000257430	NM_000038.5	848	aaAGAT/aa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73345073	73345073	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765260071		P-0063815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	16	288	0	ENST00000377767.4:c.1724C>T	p.Thr575Met	p.T575M	ENST00000377767	NM_014953.3	575	aCg/aTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42054027	42054027	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1384151590		P-0063815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	17	274	0	ENST00000219905.7:c.7489C>T	p.Arg2497Trp	p.R2497W	ENST00000219905	NM_001164273.1	2497	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0063815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	126	404	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440729	56440729	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	111	428	0	ENST00000407977.2:c.489G>C	p.Leu163Phe	p.L163F	ENST00000407977		163	ttG/ttC																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31238074	31238075	+	missense_variant	Missense_Mutation	DNP	CT	CT	AC			P-0063815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			24	14	17	0	ENST00000376228.5:c.807_808delinsGT	p.Ala270Ser	p.A270S	ENST00000376228	NM_002117.5	269	gcAGct/gcGTct																																																																															
TAP1	6890	MSKCC	GRCh37	6	32813523	32813523	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	31	327	0	ENST00000354258.4:c.2260del	p.Arg754AlafsTer105	p.R754Afs*105	ENST00000354258	NM_000593.5	754	Cgc/gc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0063815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	191	319	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231434	46231434	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	84	463	0	ENST00000334344.6:c.1274T>C	p.Leu425Pro	p.L425P	ENST00000334344	NM_152641.2	425	cTc/cCc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061229	+	frameshift_variant	Frame_Shift_Del	DEL	GCAAGTAGCAGCCGTTCTCGAA	GCAAGTAGCAGCCGTTCTCGAA	-			P-0063844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	233	678	0	ENST00000250448.2:c.760_781del	p.Phe254AlafsTer60	p.F254Afs*60	ENST00000250448	NM_004496.3	254	TTCGAGAACGGCTGCTACTTGCgc/gc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061274	38061282	+	inframe_deletion	In_Frame_Del	DEL	CCGGCTTGT	CCGGCTTGT	-			P-0063844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	108	695	0	ENST00000250448.2:c.707_715del	p.Asp236_Pro238del	p.D236_P238del	ENST00000250448	NM_004496.3	236	gACAAGCCGGgc/ggc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0063855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	73	301	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0063855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	144	526	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0063855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	97	520	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0063855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	153	678	0	ENST00000257430.4:c.4192_4193del	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0063855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	90	341	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106073	27106074	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0063855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	164	841	0	ENST00000324856.7:c.5688dup	p.Pro1897AlafsTer4	p.P1897Afs*4	ENST00000324856	NM_006015.4	1895	gag/gaGg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112544	115112544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	112	704	0	ENST00000257566.3:c.1196C>T	p.Thr399Met	p.T399M	ENST00000257566	NM_016569.3	399	aCg/aTg																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643760	38643760	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	142	584	0	ENST00000299084.4:c.1230G>C	p.Leu410Phe	p.L410F	ENST00000299084	NM_152594.2	410	ttG/ttC																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287797	33287797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	142	726	0	ENST00000374542.5:c.1456G>A	p.Ala486Thr	p.A486T	ENST00000374542	NM_001141970.1	486	Gca/Aca																																																																															
PIM1	5292	MSKCC	GRCh37	6	37140777	37140778	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGT			P-0063855-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			753	146	684	0	ENST00000373509.5:c.615_618dup	p.Tyr207SerfsTer3	p.Y207Sfs*3	ENST00000373509	NM_002648.3	205	cga/cGAGTga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0054116-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			101	64	243	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473723	67473723	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223740		P-0054116-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			85	272	652	0	ENST00000327367.4:c.803G>A	p.Arg268His	p.R268H	ENST00000327367	NM_005902.3	268	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771831816		P-0054116-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			97	337	917	0	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045136	47045136	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054116-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			241	174	804	0	ENST00000329236.7:c.2143C>T	p.Arg715Ter	p.R715*	ENST00000329236	NM_001204466.1	715	Cga/Tga																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981851	201981852	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0054116-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			314	143	837	0	ENST00000359651.3:c.566_567dup	p.Ser190ProfsTer65	p.S190Pfs*65	ENST00000359651		188	gcc/gCCcc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959180	2959180	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1184296576		P-0054116-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			209	126	623	1	ENST00000396946.4:c.2336G>A	p.Arg779Gln	p.R779Q	ENST00000396946	NM_032415.4	779	cGg/cAg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12044463	12044463	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0054116-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			34	103	412	0	ENST00000353533.5:c.1087-1G>C		p.X363_splice	ENST00000353533	NM_003010.3	363																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054116-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			160	104	358	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ATRX	546	MSKCC	GRCh37	X	76849289	76849289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054116-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			172	117	495	0	ENST00000373344.5:c.5987G>T	p.Ser1996Ile	p.S1996I	ENST00000373344	NM_000489.3	1996	aGc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0062980-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			935	12	0	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55152012	55152012	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062980-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			648	15	0	0	ENST00000257290.5:c.2444T>C	p.Val815Ala	p.V815A	ENST00000257290	NM_006206.4	815	gTc/gCc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519816		P-0063253-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			620	376	518	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0063253-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			483	173	523	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628074	187628074	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0063253-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			592	90	571	0	ENST00000441802.2:c.2908G>T	p.Gly970Ter	p.G970*	ENST00000441802	NM_005245.3	970	Gga/Tga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034471	47034471	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0063253-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			479	82	434	0	ENST00000329236.7:c.325C>T	p.Arg109Ter	p.R109*	ENST00000329236	NM_001204466.1	109	Cga/Tga																																																																															
MGA	23269	MSKCC	GRCh37	15	42054048	42054048	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0063253-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	30	346	0	ENST00000219905.7:c.7510G>C	p.Gly2504Arg	p.G2504R	ENST00000219905	NM_001164273.1	2504	Ggt/Cgt																																																																															
MGA	23269	MSKCC	GRCh37	15	42041647	42041647	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0063253-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			600	128	596	1	ENST00000219905.7:c.5842C>T	p.Gln1948Ter	p.Q1948*	ENST00000219905	NM_001164273.1	1948	Cag/Tag																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873203	136873203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755899324		P-0063253-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			799	52	616	0	ENST00000241393.3:c.295G>A	p.Val99Met	p.V99M	ENST00000241393	NM_003467.2	99	Gtg/Atg																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68353811	68353811	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063253-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			288	70	479	0	ENST00000487270.1:c.646G>T	p.Val216Phe	p.V216F	ENST00000487270	NM_133509.3	216	Gtc/Ttc																																																																															
NF1	4763	MSKCC	GRCh37	17	29679389	29679389	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063253-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			744	99	540	0	ENST00000358273.4:c.7573del	p.Asp2525ThrfsTer23	p.D2525Tfs*23	ENST00000358273	NM_001042492.2	2524	ctG/ct																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134289	11134289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063253-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			620	73	507	0	ENST00000344626.4:c.2955G>T	p.Glu985Asp	p.E985D	ENST00000344626	NM_003072.3	985	gaG/gaT																																																																															
ALK	238	MSKCC	GRCh37	2	29519830	29519830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063253-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			566	107	524	0	ENST00000389048.3:c.1741G>A	p.Val581Ile	p.V581I	ENST00000389048	NM_004304.4	581	Gtc/Atc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661463	227661463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063253-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			711	148	798	0	ENST00000305123.5:c.1992G>C	p.Met664Ile	p.M664I	ENST00000305123	NM_005544.2	664	atG/atC																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8492895	8492895	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063253-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	118	440	0	ENST00000356435.5:c.2434A>T	p.Ser812Cys	p.S812C	ENST00000356435		812	Agc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578446	7578446	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			214	445	590	0	ENST00000269305.4:c.484A>T	p.Ile162Phe	p.I162F	ENST00000269305	NM_001126112.2	162	Atc/Ttc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023768	27023769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0063256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			320	191	531	1	ENST00000324856.7:c.879dup	p.Thr294HisfsTer106	p.T294Hfs*106	ENST00000324856	NM_006015.4	292	acc/aCcc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256552	16256552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			298	250	587	0	ENST00000375759.3:c.3817G>A	p.Glu1273Lys	p.E1273K	ENST00000375759	NM_015001.2	1273	Gag/Aag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211449	98211449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779844193		P-0063256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			175	206	490	0	ENST00000331920.6:c.3706G>A	p.Glu1236Lys	p.E1236K	ENST00000331920	NM_000264.3	1236	Gag/Aag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88669523	88669523	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			356	114	350	0	ENST00000360948.2:c.1375C>G	p.Arg459Gly	p.R459G	ENST00000360948	NM_001012338.2	459	Cgg/Ggg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21337317	21337317	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs886041418		P-0063256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			338	63	505	0	ENST00000215739.8:c.202C>T	p.Arg68Cys	p.R68C	ENST00000215739	NM_006767.3	68	Cgc/Tgc																																																																															
GAB1	2549	MSKCC	GRCh37	4	144354644	144354644	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0063256-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			248	50	291	0	ENST00000262994.4:c.368A>G	p.Asp123Gly	p.D123G	ENST00000262994	NM_002039.3	123	gAt/gGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0063556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			369	693	509	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ATM	472	MSKCC	GRCh37	11	108186599	108186599	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs876658415		P-0063556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			101	179	487	0	ENST00000278616.4:c.6056A>G	p.Tyr2019Cys	p.Y2019C	ENST00000278616	NM_000051.3	2019	tAt/tGt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820605	3820605	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147083140		P-0063556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	223	557	0	ENST00000262367.5:c.2846C>T	p.Pro949Leu	p.P949L	ENST00000262367	NM_004380.2	949	cCg/cTg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115251200	115251200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			282	51	452	0	ENST00000369535.4:c.526G>T	p.Asp176Tyr	p.D176Y	ENST00000369535	NM_002524.4	176	Gat/Tat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445384	49445384	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1449494133		P-0063556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			559	69	809	1	ENST00000301067.7:c.2082G>T	p.Glu694Asp	p.E694D	ENST00000301067	NM_003482.3	694	gaG/gaT																																																																															
RAD21	5885	MSKCC	GRCh37	8	117870627	117870629	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0063556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			414	41	342	0	ENST00000297338.2:c.443_445del	p.Glu148del	p.E148del	ENST00000297338	NM_006265.2	148	gAAGtt/gtt																																																																															
RET	5979	MSKCC	GRCh37	10	43620386	43620386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			657	127	586	0	ENST00000355710.3:c.2995G>A	p.Ala999Thr	p.A999T	ENST00000355710	NM_020975.4	999	Gcg/Acg																																																																															
CDK4	1019	MSKCC	GRCh37	12	58144993	58144993	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			531	85	598	0	ENST00000257904.6:c.351C>G	p.Ile117Met	p.I117M	ENST00000257904	NM_000075.3	117	atC/atG																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45854929	45854930	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0063556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	49	494	0	ENST00000391945.4:c.2240_2241del	p.Glu747GlyfsTer26	p.E747Gfs*26	ENST00000391945	NM_000400.3	747	gAG/g																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46281179	46281179	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	41	561	0	ENST00000371998.3:c.3976G>T	p.Gly1326Cys	p.G1326C	ENST00000371998		1326	Ggt/Tgt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513299	106513299	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			307	53	497	0	ENST00000359195.3:c.2203C>G	p.Gln735Glu	p.Q735E	ENST00000359195	NM_002649.2	735	Caa/Gaa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040893	47040948	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCCTCCTTACAGGTCCCGAGGCCTCCCTAGAGCCTGGGGCCGACTCTGTGTCGAT	TCCCTCCTTACAGGTCCCGAGGCCTCCCTAGAGCCTGGGGCCGACTCTGTGTCGAT	-			P-0063556-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			74	127	346	0	ENST00000329236.7:c.1202-13_1244del		p.X401_splice	ENST00000329236	NM_001204466.1	401																																																																																
STK11	6794	MSKCC	GRCh37	19	1222003	1222004	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	A			P-0063699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	26	424	0	ENST00000326873.7:c.919dup	p.Ser307LysfsTer11	p.S307Kfs*11	ENST00000326873	NM_000455.4	306	-/A																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732948	30732948	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063699-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	42	497	0	ENST00000359013.4:c.1636T>A	p.Trp546Arg	p.W546R	ENST00000359013	NM_001024847.2	546	Tgg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0063701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	44	486	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	37	446	1	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937355	32937355	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1177986295		P-0063701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	31	345	1	ENST00000380152.3:c.8021del	p.Lys2674ArgfsTer2	p.K2674Rfs*2	ENST00000380152		2672	atA/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0063701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	28	243	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PGR	5241	MSKCC	GRCh37	11	100999005	100999005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063701-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	32	511	0	ENST00000325455.5:c.797C>A	p.Ala266Asp	p.A266D	ENST00000325455	NM_001202474.3	266	gCc/gAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0063704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	163	379	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514495		P-0063704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	42	688	0	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc																																																																															
RET	5979	MSKCC	GRCh37	10	43607565	43607565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	48	1015	0	ENST00000355710.3:c.1541G>A	p.Gly514Asp	p.G514D	ENST00000355710	NM_020975.4	514	gGc/gAc																																																																															
MGA	23269	MSKCC	GRCh37	15	41988508	41988508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	27	577	1	ENST00000219905.7:c.1300G>A	p.Asp434Asn	p.D434N	ENST00000219905	NM_001164273.1	434	Gac/Aac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437597	56437597	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	24	543	0	ENST00000407977.2:c.865del	p.Ser289ProfsTer130	p.S289Pfs*130	ENST00000407977		289	Tcc/cc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438277	56438278	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCA			P-0063704-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	23	525	0	ENST00000407977.2:c.712_715dup	p.Ala239ValfsTer21	p.A239Vfs*21	ENST00000407977		239	gcc/gTGGGcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0063791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	135	561	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680572	30680572	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	90	471	0	ENST00000376406.3:c.1147G>T	p.Gly383Cys	p.G383C	ENST00000376406	NM_014641.2	383	Ggc/Tgc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441431	52441431	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	79	600	0	ENST00000460680.1:c.421C>A	p.His141Asn	p.H141N	ENST00000460680	NM_004656.3	141	Cat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0063791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	32	281	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434734	110434734	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	73	489	0	ENST00000375856.3:c.3667G>T	p.Gly1223Cys	p.G1223C	ENST00000375856	NM_003749.2	1223	Ggt/Tgt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968256	2968256	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	87	428	0	ENST00000396946.4:c.1730A>G	p.Tyr577Cys	p.Y577C	ENST00000396946	NM_032415.4	577	tAc/tGc																																																																															
ABL1	25	MSKCC	GRCh37	9	133760205	133760205	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	49	472	0	ENST00000318560.5:c.2528G>C	p.Gly843Ala	p.G843A	ENST00000318560	NM_005157.4	843	gGg/gCg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405202	139405206	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGT	GCCGT	-			P-0063791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	65	496	0	ENST00000277541.6:c.2639_2643del	p.His880ArgfsTer62	p.H880Rfs*62	ENST00000277541	NM_017617.3	880	cACGGC/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0063795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	308	563	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0063795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			49	182	576	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259192	16259192	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	297	610	0	ENST00000375759.3:c.6457G>T	p.Val2153Leu	p.V2153L	ENST00000375759	NM_015001.2	2153	Gtg/Ttg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416114	49416114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	203	409	0	ENST00000301067.7:c.16361G>T	p.Arg5454Leu	p.R5454L	ENST00000301067	NM_003482.3	5454	cGa/cTa																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38801856	38801856	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	163	390	0	ENST00000348513.6:c.23C>A	p.Ala8Asp	p.A8D	ENST00000348513	NM_003079.4	8	gCc/gAc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40481624	40481624	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0063795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	140	482	0	ENST00000264657.5:c.1181T>A	p.Met394Lys	p.M394K	ENST00000264657	NM_139276.2	394	aTg/aAg																																																																															
BARD1	580	MSKCC	GRCh37	2	215645782	215645782	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	92	508	0	ENST00000260947.4:c.816del	p.Phe272LeufsTer4	p.F272Lfs*4	ENST00000260947	NM_000465.2	272	ttT/tt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521704	89521704	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	248	439	0	ENST00000336596.2:c.2781C>A	p.His927Gln	p.H927Q	ENST00000336596	NM_005233.5	927	caC/caA																																																																															
RASA1	5921	MSKCC	GRCh37	5	86674344	86674344	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0063795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			62	147	316	0	ENST00000274376.6:c.2476C>T	p.Gln826Ter	p.Q826*	ENST00000274376	NM_002890.2	826	Cag/Tag																																																																															
MTAP	4507	MSKCC	GRCh37	9	21838002	21838002	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			73	233	344	0	ENST00000380172.4:c.443C>G	p.Thr148Arg	p.T148R	ENST00000380172	NM_002451.3	148	aCg/aGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0063797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	216	406	1	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0063797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	230	451	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0063797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	152	520	0	ENST00000257430.4:c.4391_4394del	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426795	212426795	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	60	476	0	ENST00000342788.4:c.2320A>C	p.Ser774Arg	p.S774R	ENST00000342788	NM_005235.2	774	Agt/Cgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101064	41101064	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			738	122	512	0	ENST00000373198.4:c.1292A>C	p.Asn431Thr	p.N431T	ENST00000373198	NM_133170.3	431	aAc/aCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0063797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	169	293	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211120	2211120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	198	521	2	ENST00000398665.3:c.1374C>G	p.Ser458Arg	p.S458R	ENST00000398665	NM_032482.2	458	agC/agG																																																																															
AR	367	MSKCC	GRCh37	X	66765950	66765950	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063797-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	142	536	0	ENST00000374690.3:c.962A>G	p.Glu321Gly	p.E321G	ENST00000374690	NM_000044.3	321	gAa/gGa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0063798-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	1241	442	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0063798-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	350	608	0	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag																																																																															
STK40	83931	MSKCC	GRCh37	1	36809764	36809764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063798-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	223	472	0	ENST00000373129.3:c.841G>A	p.Glu281Lys	p.E281K	ENST00000373129	NM_032017.1	281	Gag/Aag																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647030	23647030	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063798-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	278	486	0	ENST00000261584.4:c.837A>T	p.Lys279Asn	p.K279N	ENST00000261584	NM_024675.3	279	aaA/aaT																																																																															
ATR	545	MSKCC	GRCh37	3	142281649	142281649	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063798-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	114	407	0	ENST00000350721.4:c.595A>G	p.Met199Val	p.M199V	ENST00000350721	NM_001184.3	199	Atg/Gtg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981471	70981471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063798-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			714	168	526	0	ENST00000276594.2:c.625G>T	p.Val209Phe	p.V209F	ENST00000276594	NM_024504.3	209	Gtc/Ttc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587777894		P-0063799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	118	506	0	ENST00000361445.4:c.6644C>T	p.Ser2215Phe	p.S2215F	ENST00000361445	NM_004958.3	2215	tCt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0063799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			809	145	467	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0063799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	220	779	0	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778031	3778032	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGG			P-0063799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			729	149	716	0	ENST00000262367.5:c.7013_7016dup	p.Ser2340ProfsTer2	p.S2340Pfs*2	ENST00000262367	NM_004380.2	2339	ctt/ctCCCTt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618451	37618459	+	inframe_deletion	In_Frame_Del	DEL	AAGCGGCAT	AAGCGGCAT	-			P-0063799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			702	47	711	0	ENST00000447079.4:c.130_138del	p.Arg44_Lys46del	p.R44_K46del	ENST00000447079	NM_015083.1	43	AAGCGGCAT/-																																																																															
CARM1	10498	MSKCC	GRCh37	19	11027130	11027130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063799-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	257	586	0	ENST00000327064.4:c.895G>A	p.Asp299Asn	p.D299N	ENST00000327064	NM_199141.1	299	Gat/Aat																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022592	31022592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs373221034		P-0063800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1081	140	597	0	ENST00000375687.4:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000375687	NM_015338.5	693	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0063800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	75	308	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326683	62326683	+	missense_variant,splice_region_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T			P-0063800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1131	153	611	1	ENST00000482936.1:c.3502C>T	p.Pro1168Ser	p.P1168S	ENST00000482936		1168	Ccc/Tcc																																																																															
APC	324	MSKCC	GRCh37	5	112175645	112175646	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0063800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	145	537	0	ENST00000257430.4:c.4355dup	p.Pro1453ThrfsTer2	p.P1453Tfs*2	ENST00000257430	NM_000038.5	1452	gta/gTta																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2047238	2047238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	97	207	0	ENST00000349721.2:c.800C>T	p.Pro267Leu	p.P267L	ENST00000349721	NM_003070.3	267	cCg/cTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411872	63411873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0063800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	192	659	0	ENST00000330258.3:c.1293_1294dup	p.Gly432GlufsTer18	p.G432Efs*18	ENST00000330258	NM_152424.3	432	ggc/gAGgc																																																																															
MET	4233	MSKCC	GRCh37	7	116412020	116412082	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTACCGAGCTACTTTTCCAGAAGGTATATTTCAGTTTATTGTTCTGAGAAATACCTATACAT	ACTACCGAGCTACTTTTCCAGAAGGTATATTTCAGTTTATTGTTCTGAGAAATACCTATACAT	-			P-0062821-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	95	609	0	ENST00000397752.3:c.3006_3028+40del		p.X1002_splice	ENST00000397752	NM_000245.2	1002																																																																																
AMER1	139285	MSKCC	GRCh37	X	63411256	63411256	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062821-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			291	27	665	0	ENST00000330258.3:c.1911G>T	p.Glu637Asp	p.E637D	ENST00000330258	NM_152424.3	637	gaG/gaT																																																																															
STK11	6794	MSKCC	GRCh37	19	1220362	1220371	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTGCCCGCAG	CTGCCCGCAG	A			P-0062821-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			314	13	512	0	ENST00000326873.7:c.465-10_465-1delinsA		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730882026		P-0063169-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			621	55	496	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0063169-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			320	25	345	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324057	31324057	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs12697943		P-0063169-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			638	57	458	0	ENST00000412585.2:c.506G>T	p.Arg169Leu	p.R169L	ENST00000412585	NM_005514.6	169	cGc/cTc																																																																															
RB1	5925	MSKCC	GRCh37	13	48916815	48916823	+	frameshift_variant	Frame_Shift_Del	DEL	CACTTTTAC	CACTTTTAC	T			P-0063169-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			160	15	324	0	ENST00000267163.4:c.345_353delinsT	p.Thr116Ter	p.T116*	ENST00000267163	NM_000321.2	115	ttCACTTTTACt/ttTt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206667312	206667312	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781860835		P-0063592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	123	474	2	ENST00000367120.3:c.2105G>A	p.Arg702His	p.R702H	ENST00000367120	NM_014002.3	702	cGc/cAc																																																																															
CCND1	595	MSKCC	GRCh37	11	69465943	69465943	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0063592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	317	563	0	ENST00000227507.2:c.781C>T	p.Gln261Ter	p.Q261*	ENST00000227507	NM_053056.2	261	Cag/Tag																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514098	69514098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	155	553	0	ENST00000294312.3:c.583G>A	p.Asp195Asn	p.D195N	ENST00000294312	NM_005117.2	195	Gac/Aac																																																																															
ATM	472	MSKCC	GRCh37	11	108180982	108180982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781963		P-0063592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	152	315	0	ENST00000278616.4:c.5858C>T	p.Thr1953Ile	p.T1953I	ENST00000278616	NM_000051.3	1953	aCa/aTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0063592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	249	267	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778652	3778687	+	inframe_deletion	In_Frame_Del	DEL	GCCAGGCTGGGGTTGCATGCCGGGCTGGGACTGGAG	GCCAGGCTGGGGTTGCATGCCGGGCTGGGACTGGAG	-	rs761028983		P-0063592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	109	592	0	ENST00000262367.5:c.6361_6396del	p.Leu2121_Gly2132del	p.L2121_G2132del	ENST00000262367	NM_004380.2	2121	CTCCAGTCCCAGCCCGGCATGCAACCCCAGCCTGGC/-																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913315		P-0063592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	428	555	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																															
INHA	3623	MSKCC	GRCh37	2	220439494	220439494	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	279	614	0	ENST00000243786.2:c.347G>T	p.Arg116Leu	p.R116L	ENST00000243786	NM_002191.3	116	cGg/cTg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31376760	31376760	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	242	464	0	ENST00000328111.2:c.755G>T	p.Arg252Leu	p.R252L	ENST00000328111	NM_006892.3	252	cGa/cTa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967317	134967317	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868241569		P-0063592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	155	495	2	ENST00000398015.3:c.2656G>A	p.Ala886Thr	p.A886T	ENST00000398015	NM_004441.4	886	Gca/Aca																																																																															
ATM	472	MSKCC	GRCh37	11	108202221	108202221	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	GT			P-0063592-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	130	327	0	ENST00000278616.4:c.7566delinsGT	p.Leu2523PhefsTer4	p.L2523Ffs*4	ENST00000278616	NM_000051.3	2522	caA/caGT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0063594-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	24	301	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038830	47038831	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0063594-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	31	497	0	ENST00000329236.7:c.606_607delinsTT	p.Gln202_Gly203delinsHisTer	p.Q202_G203delinsH*	ENST00000329236	NM_001204466.1	202	caGGga/caTTga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579415	7579415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0063596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	278	692	0	ENST00000269305.4:c.272G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tGg/tAg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001231	150001231	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	64	436	0	ENST00000253339.5:c.2373G>C	p.Met791Ile	p.M791I	ENST00000253339		791	atG/atC																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622307	1623329	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTACCTGCCACGTAGAAGGGGGCGGGATAGGTGCTGCTGGGGGTCTTGGCGGACGGGTAGGCGGTGGCATCCCTGCCGTAGTCCTCACCTGAGCTGGGTGGGTACACCTGCGGGCGGGTGGGCGGTGGGGGGTGCAGTCAGGACGGAGGGACCACGATCAGCCCATGCACCTTGCCGGCCTCCTGTCCCCTCCTGGTAGCACATCTACCACCCCGTTTCCCTTCCCTGTAAAGCCACCCCCCTTTAGGTAAATCCCAGCCCCTGGCCAAGTTTGAGGTTCTTATGATGTCCTGGTCTCTCTCTCCTACTCCTTTTCCAGCCCCCACCTCCCGCCTCCCTGAACTTCTGACCTTTGTACTTGAGGACTTGGATCTGGCTCTGCCTACTAAACCTTTTTCCTCCTTAATCCAGAAAACTCCTATCGACCCATCAAAACCCCAGCTCCAACACCCCATCCCATCCTTCTCCCTTGTTCCCCAGCTGGAATCAATCTTCCAGTGCTGAGCTTCCCTTGGTCCCAGAGCAACATTCGTCCTTCACTAAAGTAACAGGAAGAGGGGTCTGTGAGTAGCGCCAGCTCTGACTGGTTGGCACTGCCTGGACTGTGGGGCTGGGGCCTGTTGGTAACGTCTGCTGCTGTGCTGGAGCGGGAAGTATGCTGGGTGGGCCTGATGTTGTAATAAACTGGGGGGCGGTTTCAGGGCAGAGAAAGTGCACCCTGGGGAAGGAGGGGAGTGAGTGATACTGTTGGGAGCAGAGCCTGACCACGCCTTTGGCCTGGGAAGTCAACCTGACTCTAACCCCGAACCCAGGCCTGTGGGGAGCTGGTCGGCTGGAGGGGTGAGGAGATGTATGCCCAGGGCTCTTGGGGCCAGCACAGGCACTGGGCAGAGGGTGGTTGGTGGCTACTGAGCCAGGGAATCGGCAAATTCCCTCTCCCTCCAGCGAGATGAGACCGCAGGAGTGTGGCACAGCAGCCTGGACCATCTGCGAGGCCTGGTAGGGAGGCAGGGATGCGGGGC	TGTACCTGCCACGTAGAAGGGGGCGGGATAGGTGCTGCTGGGGGTCTTGGCGGACGGGTAGGCGGTGGCATCCCTGCCGTAGTCCTCACCTGAGCTGGGTGGGTACACCTGCGGGCGGGTGGGCGGTGGGGGGTGCAGTCAGGACGGAGGGACCACGATCAGCCCATGCACCTTGCCGGCCTCCTGTCCCCTCCTGGTAGCACATCTACCACCCCGTTTCCCTTCCCTGTAAAGCCACCCCCCTTTAGGTAAATCCCAGCCCCTGGCCAAGTTTGAGGTTCTTATGATGTCCTGGTCTCTCTCTCCTACTCCTTTTCCAGCCCCCACCTCCCGCCTCCCTGAACTTCTGACCTTTGTACTTGAGGACTTGGATCTGGCTCTGCCTACTAAACCTTTTTCCTCCTTAATCCAGAAAACTCCTATCGACCCATCAAAACCCCAGCTCCAACACCCCATCCCATCCTTCTCCCTTGTTCCCCAGCTGGAATCAATCTTCCAGTGCTGAGCTTCCCTTGGTCCCAGAGCAACATTCGTCCTTCACTAAAGTAACAGGAAGAGGGGTCTGTGAGTAGCGCCAGCTCTGACTGGTTGGCACTGCCTGGACTGTGGGGCTGGGGCCTGTTGGTAACGTCTGCTGCTGTGCTGGAGCGGGAAGTATGCTGGGTGGGCCTGATGTTGTAATAAACTGGGGGGCGGTTTCAGGGCAGAGAAAGTGCACCCTGGGGAAGGAGGGGAGTGAGTGATACTGTTGGGAGCAGAGCCTGACCACGCCTTTGGCCTGGGAAGTCAACCTGACTCTAACCCCGAACCCAGGCCTGTGGGGAGCTGGTCGGCTGGAGGGGTGAGGAGATGTATGCCCAGGGCTCTTGGGGCCAGCACAGGCACTGGGCAGAGGGTGGTTGGTGGCTACTGAGCCAGGGAATCGGCAAATTCCCTCTCCCTCCAGCGAGATGAGACCGCAGGAGTGTGGCACAGCAGCCTGGACCATCTGCGAGGCCTGGTAGGGAGGCAGGGATGCGGGGC	-			P-0063596-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	67	639	0	ENST00000344749.5:c.549+621_652+5del		p.X183_splice	ENST00000344749	NM_001136139.2	183																																																																																
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0063597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			797	125	515	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0063597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			79	18	372	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247373	153247373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			706	63	406	0	ENST00000281708.4:c.1429G>A	p.Gly477Ser	p.G477S	ENST00000281708	NM_033632.3	477	Ggt/Agt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143043366	143043366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199940140		P-0063597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	51	369	0	ENST00000262992.4:c.2050G>A	p.Val684Ile	p.V684I	ENST00000262992	NM_001101669.1	684	Gtt/Att																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0063597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	17	310	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488893	231488894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs567805129		P-0063597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	29	417	0	ENST00000295050.7:c.1263dup	p.Ile422TyrfsTer11	p.I422Yfs*11	ENST00000295050	NM_032018.5	419	aat/aaTt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495330	56495330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1060	89	579	0	ENST00000267101.3:c.3520G>A	p.Glu1174Lys	p.E1174K	ENST00000267101	NM_001982.3	1174	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579554	7579555	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CATCAAAT			P-0063597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			997	124	586	0	ENST00000269305.4:c.125_132dup	p.Leu45IlefsTer2	p.L45Ifs*2	ENST00000269305	NM_001126112.2	44	-/ATTTGATG																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117940	70117941	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0063597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			831	264	571	0	ENST00000245479.2:c.410dup	p.Thr138AspfsTer114	p.T138Dfs*114	ENST00000245479	NM_000346.3	136	-/A																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604667	48604667	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762118751		P-0063597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			774	63	515	0	ENST00000342988.3:c.1489C>T	p.Arg497Cys	p.R497C	ENST00000342988	NM_005359.5	497	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175770	112175771	+	frameshift_variant	Frame_Shift_Ins	INS	GG	GG	AGAAAGCAA			P-0063597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			718	83	499	0	ENST00000257430.4:c.4479_4480delinsAGAAAGCAA	p.Thr1496LysfsTer20	p.T1496Kfs*20	ENST00000257430	NM_000038.5	1493	acGGaa/acAGAAAGCAAaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0063599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	54	211	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0063599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	48	405	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112155044	112155044	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	C			P-0063599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	137	366	0	ENST00000257430.4:c.1312+3A>C		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
EPHA7	2045	MSKCC	GRCh37	6	93965602	93965602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	135	456	0	ENST00000369303.4:c.2326G>T	p.Asp776Tyr	p.D776Y	ENST00000369303	NM_004440.3	776	Gat/Tat																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870848	12870849	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0063599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	122	517	0	ENST00000228872.4:c.78dup	p.Ser27LeufsTer98	p.S27Lfs*98	ENST00000228872	NM_004064.3	25	-/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0063599-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	77	333	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0063608-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	332	514	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446849	49446849	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1204392134		P-0063608-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	193	654	0	ENST00000301067.7:c.961C>T	p.Arg321Trp	p.R321W	ENST00000301067	NM_003482.3	321	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438525	49438525	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0063608-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	100	521	0	ENST00000301067.7:c.4963+2T>G		p.X1655_splice	ENST00000301067	NM_003482.3	1655																																																																																
LYN	4067	MSKCC	GRCh37	8	56860257	56860257	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1301994322		P-0063608-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	163	390	0	ENST00000519728.1:c.259G>A	p.Gly87Arg	p.G87R	ENST00000519728	NM_002350.3	87	Gga/Aga																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006056	22006056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063608-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1119	90	673	0	ENST00000276925.6:c.347C>T	p.Pro116Leu	p.P116L	ENST00000276925	NM_004936.3	116	cCc/cTc																																																																															
ABL1	25	MSKCC	GRCh37	9	133759595	133759595	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063608-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	97	706	0	ENST00000318560.5:c.1918G>T	p.Asp640Tyr	p.D640Y	ENST00000318560	NM_005157.4	640	Gac/Tac																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12043192	12043192	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0063612-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	28	374	0	ENST00000353533.5:c.1077A>C	p.Lys359Asn	p.K359N	ENST00000353533	NM_003010.3	359	aaA/aaC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0063668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	36	267	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0063668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	79	654	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637555	52637555	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0063668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	43	439	0	ENST00000394830.3:c.2761C>T	p.Arg921Ter	p.R921*	ENST00000394830	NM_018313.4	921	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858210	9858210	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756930722		P-0063668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	52	675	0	ENST00000330684.3:c.3191C>T	p.Thr1064Met	p.T1064M	ENST00000330684	NM_001134407.1	1064	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175969	112175969	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	72	618	0	ENST00000257430.4:c.4678G>T	p.Glu1560Ter	p.E1560*	ENST00000257430	NM_000038.5	1560	Gaa/Taa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540974	187540974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752611276		P-0063668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	76	805	0	ENST00000441802.2:c.6766G>A	p.Ala2256Thr	p.A2256T	ENST00000441802	NM_005245.3	2256	Gca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0063668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	80	384	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711987	89711987	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1085308053		P-0063668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	44	388	0	ENST00000371953.3:c.605C>T	p.Thr202Ile	p.T202I	ENST00000371953	NM_000314.4	202	aCt/aTt																																																																															
NADK	65220	MSKCC	GRCh37	1	1686080	1686080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	45	776	0	ENST00000341426.5:c.746G>A	p.Arg249Gln	p.R249Q	ENST00000341426	NM_023018.4	249	cGg/cAg																																																																															
RET	5979	MSKCC	GRCh37	10	43620355	43620355	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0063668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	48	684	1	ENST00000355710.3:c.2964G>A	p.Trp988Ter	p.W988*	ENST00000355710	NM_020975.4	988	tgG/tgA																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534436	63534437	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0063668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	67	789	0	ENST00000307078.5:c.1084dup	p.Met362AsnfsTer12	p.M362Nfs*12	ENST00000307078	NM_004655.3	362	atg/aAtg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119765	70119766	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGC			P-0063668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	30	574	0	ENST00000245479.2:c.768_771dup	p.Pro258AlafsTer39	p.P258Afs*39	ENST00000245479	NM_000346.3	256	ggg/ggGCGCg																																																																															
WT1	7490	MSKCC	GRCh37	11	32413560	32413560	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28941778		P-0063682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	305	479	1	ENST00000332351.3:c.1390G>A	p.Asp464Asn	p.D464N	ENST00000332351	NM_024426.4	464	Gac/Aac																																																																															
RB1	5925	MSKCC	GRCh37	13	48953759	48953759	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0063682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			54	106	233	0	ENST00000267163.4:c.1362C>A	p.Tyr454Ter	p.Y454*	ENST00000267163	NM_000321.2	454	taC/taA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0063682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	331	655	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61708394	61708394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	103	339	0	ENST00000401558.2:c.2995A>T	p.Thr999Ser	p.T999S	ENST00000401558	NM_003400.3	999	Aca/Tca																																																																															
EP300	2033	MSKCC	GRCh37	22	41545969	41545974	+	inframe_deletion	In_Frame_Del	DEL	CCTGTT	CCTGTT	-			P-0063682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	686	690	0	ENST00000263253.7:c.2587_2592del	p.Val863_Pro864del	p.V863_P864del	ENST00000263253	NM_001429.3	862	CCTGTT/-																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332730	153332730	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0063682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	458	650	1	ENST00000281708.4:c.226C>T	p.Gln76Ter	p.Q76*	ENST00000281708	NM_033632.3	76	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175476	112175476	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0063683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	449	512	0	ENST00000257430.4:c.4188del	p.Phe1396LeufsTer19	p.F1396Lfs*19	ENST00000257430	NM_000038.5	1395	agT/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577115	7577115	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	365	564	1	ENST00000269305.4:c.823del	p.Cys275ValfsTer70	p.C275Vfs*70	ENST00000269305	NM_001126112.2	275	Tgt/gt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749309	43749309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	111	446	1	ENST00000382044.4:c.1497G>T	p.Glu499Asp	p.E499D	ENST00000382044	NM_001141980.1	499	gaG/gaT																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78866576	78866576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	359	501	0	ENST00000306801.3:c.2149C>T	p.Leu717Phe	p.L717F	ENST00000306801	NM_020761.2	717	Ctt/Ttt																																																																															
TRIP13	9319	MSKCC	GRCh37	5	894924	894941	+	inframe_deletion	In_Frame_Del	DEL	AACCTGAGTGTTAGAAAG	AACCTGAGTGTTAGAAAG	-			P-0063683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	60	362	0	ENST00000166345.3:c.115_132del	p.Asn39_Lys44del	p.N39_K44del	ENST00000166345	NM_004237.3	39	AACCTGAGTGTTAGAAAG/-																																																																															
SESN1	27244	MSKCC	GRCh37	6	109312007	109312007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	50	372	0	ENST00000436639.2:c.1265T>C	p.Leu422Ser	p.L422S	ENST00000436639	NM_014454.2	422	tTg/tCg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	253	661	4	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	179	481	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1023835002		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	420	559	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	281	827	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15308383	15308383	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			748	91	663	0	ENST00000263388.2:c.125del	p.Pro42LeufsTer194	p.P42Lfs*194	ENST00000263388	NM_000435.2	42	cCt/ct																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15973548	15973548	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1000518180		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	224	522	1	ENST00000268712.3:c.4444C>T	p.Arg1482Trp	p.R1482W	ENST00000268712	NM_006311.3	1482	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	217	666	2	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625251	69625251	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782147248		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	213	593	0	ENST00000334134.2:c.542G>A	p.Arg181His	p.R181H	ENST00000334134	NM_005247.2	181	cGc/cAc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	229	715	3	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023769	27023769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	194	647	0	ENST00000324856.7:c.879del	p.Thr294ProfsTer69	p.T294Pfs*69	ENST00000324856	NM_006015.4	292	aCc/ac																																																																															
ABL1	25	MSKCC	GRCh37	9	133753910	133753910	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149852028		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	89	434	0	ENST00000318560.5:c.1379G>A	p.Arg460His	p.R460H	ENST00000318560	NM_005157.4	460	cGc/cAc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	206	574	8	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	212	557	1	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118885	70118885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			780	285	704	0	ENST00000245479.2:c.457C>T	p.Pro153Ser	p.P153S	ENST00000245479	NM_000346.3	153	Ccc/Tcc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	167	440	7	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	148	449	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553249	106553249	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1415765117		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	256	715	0	ENST00000369096.4:c.1214C>T	p.Ser405Leu	p.S405L	ENST00000369096	NM_001198.3	405	tCg/tTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	207	631	0	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	218	652	1	ENST00000447079.4:c.4382del	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933400	39933400	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			841	217	699	0	ENST00000378444.4:c.1199del	p.Gly400AlafsTer42	p.G400Afs*42	ENST00000378444	NM_001123385.1	400	gGc/gc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926270	112926270	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121918457		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	169	361	0	ENST00000351677.2:c.1403C>T	p.Thr468Met	p.T468M	ENST00000351677	NM_002834.3	468	aCg/aTg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868176	45868176	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs559154781		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	203	582	0	ENST00000391945.4:c.514G>A	p.Ala172Thr	p.A172T	ENST00000391945	NM_000400.3	172	Gct/Act																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906603	32906603	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	49	465	2	ENST00000380152.3:c.994del	p.Ile332PhefsTer17	p.I332Ffs*17	ENST00000380152		330	Aaa/aa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	230	667	0	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137271	64137271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	220	607	2	ENST00000334205.4:c.1703C>T	p.Thr568Met	p.T568M	ENST00000334205	NM_003942.2	568	aCg/aTg																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981721	101981721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	68	631	1	ENST00000282441.5:c.147del	p.Ala50ProfsTer24	p.A50Pfs*24	ENST00000282441	NM_001130145.2	48	Ccc/cc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37864776	37864776	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185670819		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	199	527	0	ENST00000269571.5:c.428G>A	p.Arg143Gln	p.R143Q	ENST00000269571		143	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922363	178922363	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	84	237	0	ENST00000263967.3:c.1132T>C	p.Cys378Arg	p.C378R	ENST00000263967	NM_006218.2	378	Tgt/Cgt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	214	678	5	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	198	578	0	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261146	16261146	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769982439		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	278	650	0	ENST00000375759.3:c.8411C>T	p.Ala2804Val	p.A2804V	ENST00000375759	NM_015001.2	2804	gCg/gTg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30105512	30105512	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768104173		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	178	519	0	ENST00000331968.5:c.1174G>A	p.Ala392Thr	p.A392T	ENST00000331968	NM_002742.2	392	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			787	218	864	0	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612358	1612358	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770576452		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	219	660	0	ENST00000344749.5:c.1661G>A	p.Arg554Gln	p.R554Q	ENST00000344749	NM_001136139.2	554	cGg/cAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557846	187557848	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs764081811		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			806	93	575	0	ENST00000441802.2:c.3863_3865del	p.Ser1288del	p.S1288del	ENST00000441802	NM_005245.3	1288	tCCTac/tac																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31395677	31395677	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1267164985		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	194	648	2	ENST00000328111.2:c.2530G>A	p.Ala844Thr	p.A844T	ENST00000328111	NM_006892.3	844	Gcc/Acc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438688	49438688	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749039924		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	164	614	0	ENST00000301067.7:c.4802G>A	p.Arg1601His	p.R1601H	ENST00000301067	NM_003482.3	1601	cGt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210925	36210925	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs531663002		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	235	785	0	ENST00000222270.7:c.676C>T	p.Arg226Trp	p.R226W	ENST00000222270	NM_014727.1	226	Cgg/Tgg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29092947	29092947	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730881688		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	144	356	0	ENST00000328354.6:c.1037G>A	p.Arg346His	p.R346H	ENST00000328354	NM_007194.3	346	cGt/cAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244249	5244249	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	187	722	0	ENST00000357368.4:c.1233del	p.Ser414AlafsTer30	p.S414Afs*30	ENST00000357368	NM_002850.3	411	ggG/gg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201980293	201980293	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			740	119	551	0	ENST00000359651.3:c.33del	p.Phe11LeufsTer32	p.F11Lfs*32	ENST00000359651		10	aTt/at																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200228	67200228	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770979132		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	204	663	0	ENST00000312629.5:c.536C>T	p.Thr179Met	p.T179M	ENST00000312629	NM_003952.2	179	aCg/aTg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40476850	40476850	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			781	98	592	0	ENST00000264657.5:c.1479del	p.Phe493LeufsTer16	p.F493Lfs*16	ENST00000264657	NM_139276.2	493	ttT/tt																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480028	50480028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs759976916		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	195	562	0	ENST00000394963.4:c.262C>T	p.Arg88Ter	p.R88*	ENST00000394963	NM_003076.4	88	Cga/Tga																																																																															
CIC	23152	MSKCC	GRCh37	19	42798839	42798839	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778649585		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	198	645	0	ENST00000575354.2:c.4411C>T	p.Arg1471Trp	p.R1471W	ENST00000575354	NM_015125.3	1471	Cgg/Tgg																																																																															
CALR	811	MSKCC	GRCh37	19	13051105	13051105	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			845	109	626	0	ENST00000316448.5:c.541A>G	p.Thr181Ala	p.T181A	ENST00000316448	NM_004343.3	181	Acc/Gcc																																																																															
CIC	23152	MSKCC	GRCh37	19	42794048	42794048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	184	566	0	ENST00000575354.2:c.1409G>A	p.Arg470Gln	p.R470Q	ENST00000575354	NM_015125.3	470	cGg/cAg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243675627	243675627	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	73	236	0	ENST00000263826.5:c.1353del	p.Lys451AsnfsTer55	p.K451Nfs*55	ENST00000263826	NM_005465.4	451	aaA/aa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2956955	2956955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	169	470	0	ENST00000396946.4:c.2672G>A	p.Arg891Gln	p.R891Q	ENST00000396946	NM_032415.4	891	cGa/cAa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212381	5212381	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372226485		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	194	765	1	ENST00000357368.4:c.4736C>T	p.Pro1579Leu	p.P1579L	ENST00000357368	NM_002850.3	1579	cCg/cTg																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51436084	51436084	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	159	476	0	ENST00000262662.1:c.49del	p.Asp17ThrfsTer2	p.D17Tfs*2	ENST00000262662		15	aGg/ag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851924	63851924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199637139		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	247	584	1	ENST00000279873.7:c.2702C>T	p.Thr901Met	p.T901M	ENST00000279873	NM_032199.2	901	aCg/aTg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46268687	46268687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			773	117	593	0	ENST00000371998.3:c.2972T>C	p.Met991Thr	p.M991T	ENST00000371998		991	aTg/aCg																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025606	1025606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	210	692	1	ENST00000358495.3:c.769C>T	p.Arg257Trp	p.R257W	ENST00000358495	NM_134424.2	257	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108235930	108235930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	175	496	0	ENST00000278616.4:c.8972G>A	p.Cys2991Tyr	p.C2991Y	ENST00000278616	NM_000051.3	2991	tGc/tAc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141549424	141549424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	187	443	0	ENST00000220592.5:c.2164G>A	p.Glu722Lys	p.E722K	ENST00000220592	NM_012154.3	722	Gag/Aag																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	90	468	3	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	198	507	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21341837	21341837	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587777177		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	207	541	0	ENST00000215739.8:c.365C>T	p.Ser122Leu	p.S122L	ENST00000215739	NM_006767.3	122	tCg/tTg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29439321	29439321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	197	477	0	ENST00000544604.2:c.536C>T	p.Pro179Leu	p.P179L	ENST00000544604	NM_001206998.1	179	cCg/cTg																																																																															
CTR9	9646	MSKCC	GRCh37	11	10794202	10794202	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	67	383	0	ENST00000361367.2:c.2580G>T	p.Gln860His	p.Q860H	ENST00000361367	NM_014633.3	860	caG/caT																																																																															
ATM	472	MSKCC	GRCh37	11	108115738	108115738	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	139	402	0	ENST00000278616.4:c.889del	p.Thr297ProfsTer23	p.T297Pfs*23	ENST00000278616	NM_000051.3	296	Aaa/aa																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112910817	112910817	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	114	346	0	ENST00000351677.2:c.830del	p.Asn277IlefsTer62	p.N277Ifs*62	ENST00000351677	NM_002834.3	276	Aaa/aa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562640	21562640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	198	505	0	ENST00000382592.4:c.1279C>T	p.Pro427Ser	p.P427S	ENST00000382592	NM_014572.2	427	Ccc/Tcc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28908170	28908170	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	85	415	0	ENST00000282397.4:c.2585T>C	p.Met862Thr	p.M862T	ENST00000282397	NM_002019.4	862	aTg/aCg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518708	103518708	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201581850		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	137	428	1	ENST00000355739.4:c.2296G>A	p.Gly766Arg	p.G766R	ENST00000355739	NM_000123.3	766	Gga/Aga																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396708	30396708	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	106	356	0	ENST00000331968.5:c.11del	p.Pro4LeufsTer54	p.P4Lfs*54	ENST00000331968	NM_002742.2	4	cCt/ct																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023381	33023381	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1332974507		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	235	607	0	ENST00000300177.4:c.490C>T	p.Pro164Ser	p.P164S	ENST00000300177	NM_001191322.1	164	Cct/Tct																																																																															
MGA	23269	MSKCC	GRCh37	15	41988607	41988607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	387	532	0	ENST00000219905.7:c.1399C>T	p.Pro467Ser	p.P467S	ENST00000219905	NM_001164273.1	467	Cca/Tca																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2096262	2096262	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	111	492	0	ENST00000219066.1:c.245T>A	p.Leu82His	p.L82H	ENST00000219066	NM_002528.5	82	cTc/cAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134304	2134304	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	256	741	0	ENST00000219476.3:c.4081C>T	p.Arg1361Ter	p.R1361*	ENST00000219476	NM_000548.3	1361	Cga/Tga																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647941	3647941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	218	588	2	ENST00000294008.3:c.1223G>A	p.Arg408Gln	p.R408Q	ENST00000294008	NM_032444.2	408	cGg/cAg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50815179	50815179	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761903963		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	146	434	0	ENST00000398568.2:c.1532C>T	p.Thr511Met	p.T511M	ENST00000398568	NM_001042412.1	511	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845609	72845609	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs190630040		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	201	672	1	ENST00000268489.5:c.3731C>T	p.Thr1244Met	p.T1244M	ENST00000268489	NM_006885.3	1244	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991560	72991560	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			725	95	646	0	ENST00000268489.5:c.2485A>T	p.Met829Leu	p.M829L	ENST00000268489	NM_006885.3	829	Atg/Ttg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357493	89357493	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	218	661	1	ENST00000301030.4:c.325T>C	p.Tyr109His	p.Y109H	ENST00000301030	NM_001256183.1	109	Tac/Cac																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110945	8110945	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	82	481	0	ENST00000585124.1:c.152-2A>G		p.X51_splice	ENST00000585124	NM_004217.3	51																																																																																
SOX9	6662	MSKCC	GRCh37	17	70120281	70120281	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	267	656	0	ENST00000245479.2:c.1283A>G	p.Tyr428Cys	p.Y428C	ENST00000245479	NM_000346.3	428	tAc/tGc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101854	11101854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377549345		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	217	589	0	ENST00000344626.4:c.1274G>A	p.Arg425Gln	p.R425Q	ENST00000344626	NM_003072.3	425	cGg/cAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105601	11105601	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1286498410		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	199	573	0	ENST00000344626.4:c.1517C>T	p.Thr506Met	p.T506M	ENST00000344626	NM_003072.3	506	aCg/aTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302979	15302979	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	276	809	0	ENST00000263388.2:c.471C>A	p.Ser157Arg	p.S157R	ENST00000263388	NM_000435.2	157	agC/agA																																																																															
AXL	558	MSKCC	GRCh37	19	41726664	41726664	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	209	567	0	ENST00000301178.4:c.209T>G	p.Leu70Arg	p.L70R	ENST00000301178	NM_021913.4	70	cTt/cGt																																																																															
ERF	2077	MSKCC	GRCh37	19	42754531	42754531	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370521331		P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	252	610	0	ENST00000222329.4:c.209G>A	p.Arg70His	p.R70H	ENST00000222329	NM_006494.2	70	cGc/cAc																																																																															
CIC	23152	MSKCC	GRCh37	19	42798412	42798412	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	85	548	0	ENST00000575354.2:c.4283A>C	p.Lys1428Thr	p.K1428T	ENST00000575354	NM_015125.3	1428	aAg/aCg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422973	47422973	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	215	572	0	ENST00000404338.3:c.1044del	p.Phe348LeufsTer8	p.F348Lfs*8	ENST00000404338	NM_004491.4	347	gcT/gc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906429	50906429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	235	664	1	ENST00000440232.2:c.1090C>A	p.Leu364Met	p.L364M	ENST00000440232	NM_002691.3	364	Ctg/Atg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26022368	26022368	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	93	411	0	ENST00000435504.4:c.289G>T	p.Gly97Cys	p.G97C	ENST00000435504		97	Ggt/Tgt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213165	39213165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	247	629	0	ENST00000402219.2:c.3802G>A	p.Gly1268Ser	p.G1268S	ENST00000402219	NM_005633.3	1268	Ggc/Agc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47656920	47656921	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGC			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	145	298	0	ENST00000233146.2:c.1119_1122dup	p.Thr375AlafsTer15	p.T375Afs*15	ENST00000233146	NM_000251.2	372	-/AGGC																																																																															
MSH2	4436	MSKCC	GRCh37	2	47657037	47657037	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	190	410	0	ENST00000233146.2:c.1235del	p.Asn412IlefsTer26	p.N412Ifs*26	ENST00000233146	NM_000251.2	411	atA/at																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29444430	29444431	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	236	510	0	ENST00000544604.2:c.966_967insA	p.Trp323MetfsTer144	p.W323Mfs*144	ENST00000544604	NM_001206998.1	322	-/A																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098457	47098457	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	211	593	0	ENST00000409792.3:c.6817del	p.Trp2273GlyfsTer36	p.W2273Gfs*36	ENST00000409792	NM_014159.6	2273	Tgg/gg																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981465	63981465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			926	59	785	0	ENST00000295900.6:c.1967C>A	p.Pro656His	p.P656H	ENST00000295900	NM_000333.3	656	cCc/cAc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205847	128205847	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	89	538	0	ENST00000341105.2:c.28T>C	p.Trp10Arg	p.W10R	ENST00000341105	NM_032638.4	10	Tgg/Cgg																																																																															
BCL6	604	MSKCC	GRCh37	3	187447176	187447176	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			785	106	633	0	ENST00000232014.4:c.1017C>A	p.Cys339Ter	p.C339*	ENST00000232014	NM_001130845.1	339	tgC/tgA																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748020	41748020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	102	288	1	ENST00000226382.2:c.749C>T	p.Ala250Val	p.A250V	ENST00000226382	NM_003924.3	250	gCg/gTg																																																																															
REST	5978	MSKCC	GRCh37	4	57777484	57777484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	246	631	2	ENST00000309042.7:c.680G>A	p.Arg227Gln	p.R227Q	ENST00000309042	NM_005612.4	227	cGa/cAa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637165	176637165	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			806	123	560	0	ENST00000439151.2:c.1765T>G	p.Ser589Ala	p.S589A	ENST00000439151	NM_022455.4	589	Tct/Gct																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821376	32821376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			797	145	692	2	ENST00000354258.4:c.218G>A	p.Arg73His	p.R73H	ENST00000354258	NM_000593.5	73	cGc/cAc																																																																															
SESN1	27244	MSKCC	GRCh37	6	109319939	109319939	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	45	412	0	ENST00000436639.2:c.749A>C	p.Glu250Ala	p.E250A	ENST00000436639	NM_014454.2	250	gAg/gCg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117686286	117686286	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	163	484	0	ENST00000368508.3:c.3055A>G	p.Thr1019Ala	p.T1019A	ENST00000368508	NM_002944.2	1019	Act/Gct																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199748	138199748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	239	651	0	ENST00000237289.4:c.1166C>T	p.Thr389Met	p.T389M	ENST00000237289	NM_001270507.1	389	aCg/aTg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864443	162864443	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	47	453	0	ENST00000366898.1:c.70T>A	p.Phe24Ile	p.F24I	ENST00000366898	NM_004562.2	24	Ttc/Atc																																																																															
MET	4233	MSKCC	GRCh37	7	116397752	116397752	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	71	489	0	ENST00000397752.3:c.2026A>G	p.Thr676Ala	p.T676A	ENST00000397752	NM_000245.2	676	Act/Gct																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878505	151878505	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	259	557	0	ENST00000262189.6:c.6440A>G	p.Gln2147Arg	p.Q2147R	ENST00000262189	NM_170606.2	2147	cAa/cGa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737558	145737558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			784	283	881	2	ENST00000428558.2:c.3205C>T	p.Arg1069Cys	p.R1069C	ENST00000428558	NM_004260.3	1069	Cgt/Tgt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98215884	98215884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	146	402	0	ENST00000331920.6:c.3325G>A	p.Gly1109Ser	p.G1109S	ENST00000331920	NM_000264.3	1109	Ggc/Agc																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139563037	139563037	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	244	643	0	ENST00000308874.7:c.112del	p.Asp38ThrfsTer159	p.D38Tfs*159	ENST00000308874		37	Ggg/gg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932603	39932603	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			837	209	737	0	ENST00000378444.4:c.1996A>G	p.Ile666Val	p.I666V	ENST00000378444	NM_001123385.1	666	Att/Gtt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057937	27057937	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	75	827	0	ENST00000324856.7:c.1650del	p.Tyr551ThrfsTer68	p.Y551Tfs*68	ENST00000324856	NM_006015.4	549	Ccc/cc																																																																															
MPL	4352	MSKCC	GRCh37	1	43803863	43803863	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs6087		P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	133	593	0	ENST00000372470.3:c.173C>T	p.Ala58Val	p.A58V	ENST00000372470	NM_005373.2	58	gCg/gTg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743579	46743579	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144347182		P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	48	663	0	ENST00000371975.4:c.1960C>T	p.Arg654Cys	p.R654C	ENST00000371975	NM_003579.3	654	Cgc/Tgc																																																																															
CBL	867	MSKCC	GRCh37	11	119149355	119149356	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATG	rs1358339544		P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	97	593	2	ENST00000264033.4:c.1380_1382dup	p.Asp460dup	p.D460dup	ENST00000264033	NM_005188.3	460	tat/tATGat																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230389	46230391	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	102	435	0	ENST00000334344.6:c.727_729del	p.Asp243del	p.D243del	ENST00000334344	NM_152641.2	241	gtTGAt/gtt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435484	49435484	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	111	567	0	ENST00000301067.7:c.6188del	p.Lys2063ArgfsTer31	p.K2063Rfs*31	ENST00000301067	NM_003482.3	2063	aAg/ag																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514020	103514020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	123	566	0	ENST00000355739.4:c.836G>T	p.Arg279Met	p.R279M	ENST00000355739	NM_000123.3	279	aGg/aTg																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	199	593	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
BLM	641	MSKCC	GRCh37	15	91293225	91293225	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs201722470		P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	132	595	0	ENST00000355112.3:c.727A>G	p.Ile243Val	p.I243V	ENST00000355112	NM_000057.2	243	Att/Gtt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354396	354396	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	34	504	0	ENST00000262320.3:c.1162T>G	p.Phe388Val	p.F388V	ENST00000262320	NM_003502.3	388	Ttc/Gtc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647622	3647622	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1265030199		P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	47	744	0	ENST00000294008.3:c.1441C>T	p.Arg481Ter	p.R481*	ENST00000294008	NM_032444.2	481	Cga/Tga																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646735	23646735	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	114	585	0	ENST00000261584.4:c.1132C>G	p.Pro378Ala	p.P378A	ENST00000261584	NM_024675.3	378	Cct/Gct																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	93	724	3	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992965	72992965	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	130	675	0	ENST00000268489.5:c.1080del	p.Gly361AspfsTer35	p.G361Dfs*35	ENST00000268489	NM_006885.3	360	ccC/cc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	142	620	2	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679713	33679713	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	117	658	0	ENST00000308377.4:c.2368A>G	p.Thr790Ala	p.T790A	ENST00000308377	NM_152270.3	790	Acc/Gcc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883780	37883780	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	135	804	0	ENST00000269571.5:c.3392T>C	p.Leu1131Pro	p.L1131P	ENST00000269571		1131	cTg/cCg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40460269	40460269	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	107	549	0	ENST00000345506.4:c.1984del	p.Asp662ThrfsTer2	p.D662Tfs*2	ENST00000345506	NM_003152.3	660	ctG/ct																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	162	907	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492686	56492686	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	126	484	0	ENST00000407977.2:c.252+1G>A		p.X84_splice	ENST00000407977		84																																																																																
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	124	709	3	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533152	63533152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	118	583	0	ENST00000307078.5:c.1742G>A	p.Arg581His	p.R581H	ENST00000307078	NM_004655.3	581	cGc/cAc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs771001164		P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	94	604	0	ENST00000307078.5:c.1214_1215del	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152098	11152098	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1290442223		P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	151	741	2	ENST00000344626.4:c.4286G>A	p.Arg1429His	p.R1429H	ENST00000344626	NM_003072.3	1429	cGc/cAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298757	15298757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	116	556	0	ENST00000263388.2:c.1541C>T	p.Thr514Met	p.T514M	ENST00000263388	NM_000435.2	514	aCg/aTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	138	953	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47656880	47656880	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	77	284	0	ENST00000233146.2:c.1077-1G>A		p.X359_splice	ENST00000233146	NM_000251.2	359																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40714424	40714424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	112	581	0	ENST00000373198.4:c.3973G>A	p.Ala1325Thr	p.A1325T	ENST00000373198	NM_133170.3	1325	Gca/Aca																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445208	29445209	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	113	630	0	ENST00000544604.2:c.1046_1047del	p.Val349GlyfsTer117	p.V349Gfs*117	ENST00000544604	NM_001206998.1	347	GTg/g																																																																															
EP300	2033	MSKCC	GRCh37	22	41572291	41572291	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	120	616	0	ENST00000263253.7:c.4820A>G	p.Asn1607Ser	p.N1607S	ENST00000263253	NM_001429.3	1607	aAc/aGc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277972	41277972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	134	592	0	ENST00000349496.5:c.1936T>C	p.Ser646Pro	p.S646P	ENST00000349496	NM_001904.3	646	Tct/Cct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	61	276	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801507	1801507	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	28	636	0	ENST00000260795.2:c.413A>T	p.Glu138Val	p.E138V	ENST00000260795		138	gAg/gTg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748321	41748321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	125	538	0	ENST00000226382.2:c.448C>T	p.Arg150Cys	p.R150C	ENST00000226382	NM_003924.3	150	Cgc/Tgc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535424	66535424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	89	559	1	ENST00000273854.3:c.37C>T	p.Arg13Trp	p.R13W	ENST00000273854	NM_004439.5	13	Cgg/Tgg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	150	617	8	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	109	442	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323313	31323313	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	51	196	0	ENST00000412585.2:c.676A>G	p.Arg226Gly	p.R226G	ENST00000412585	NM_005514.6	226	Agg/Ggg																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64288917	64288917	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755475012		P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	108	403	0	ENST00000370651.3:c.313G>A	p.Val105Ile	p.V105I	ENST00000370651	NM_003463.4	105	Gtt/Att																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005515	150005515	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	120	731	2	ENST00000253339.5:c.710del	p.Pro237HisfsTer6	p.P237Hfs*6	ENST00000253339		237	cCa/ca																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129329	152129329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	97	676	2	ENST00000206249.3:c.287del	p.Gly96ValfsTer13	p.G96Vfs*13	ENST00000206249	NM_000125.3	94	ctG/ct																																																																															
PARK2	5071	MSKCC	GRCh37	6	162622284	162622284	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	98	477	0	ENST00000366898.1:c.413C>T	p.Ala138Val	p.A138V	ENST00000366898	NM_004562.2	138	gCa/gTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240761	55240761	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1231769201		P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	155	758	0	ENST00000275493.2:c.2005C>T	p.Arg669Ter	p.R669*	ENST00000275493	NM_005228.3	669	Cga/Tga																																																																															
MET	4233	MSKCC	GRCh37	7	116380988	116380988	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	50	482	0	ENST00000397752.3:c.1610A>G	p.Gln537Arg	p.Q537R	ENST00000397752	NM_000245.2	537	cAg/cGg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	93	406	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372093	55372093	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	105	757	2	ENST00000297316.4:c.788del	p.Pro263ArgfsTer124	p.P263Rfs*124	ENST00000297316	NM_022454.3	261	ggC/gg																																																																															
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	107	524	0	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8524978	8524978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	113	351	0	ENST00000356435.5:c.626C>T	p.Ala209Val	p.A209V	ENST00000356435		209	gCc/gTc																																																																															
TEK	7010	MSKCC	GRCh37	9	27173286	27173286	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	131	513	0	ENST00000380036.4:c.827C>A	p.Ser276Tyr	p.S276Y	ENST00000380036	NM_000459.3	276	tCt/tAt																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80412494	80412494	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	160	526	0	ENST00000286548.4:c.547C>T	p.Arg183Ter	p.R183*	ENST00000286548	NM_002072.3	183	Cga/Tga																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913510	39913513	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	ACAA	ACAA	-			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	110	468	0	ENST00000378444.4:c.4815_4818del	p.Cys1606AsnfsTer11	p.C1606Nfs*11	ENST00000378444	NM_001123385.1	1605	gtTTGT/gt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228289	53228289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	133	614	0	ENST00000375401.3:c.2113C>T	p.Arg705Cys	p.R705C	ENST00000375401	NM_004187.3	705	Cgc/Tgc																																																																															
ATRX	546	MSKCC	GRCh37	X	76763971	76763971	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	97	590	1	ENST00000373344.5:c.7337T>C	p.Met2446Thr	p.M2446T	ENST00000373344	NM_000489.3	2446	aTg/aCg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14042029	14042029	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0063708-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	156	462	0	ENST00000311895.7:c.2576A>T	p.Asn859Ile	p.N859I	ENST00000311895	NM_005236.2	859	aAt/aTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0063711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	92	455	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0063711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	83	570	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PARP1	142	MSKCC	GRCh37	1	226568802	226568802	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	35	419	0	ENST00000366794.5:c.1267del	p.Ala423ProfsTer17	p.A423Pfs*17	ENST00000366794	NM_001618.3	423	Gcc/cc																																																																															
CARM1	10498	MSKCC	GRCh37	19	10982593	10982654	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACAGCCGTGAGTACGGGGCCCCGGGGCAGGCGCAGGGCCGGGGCTGCTCACGAGGCCGGCCC	ACAGCCGTGAGTACGGGGCCCCGGGGCAGGCGCAGGGCCGGGGCTGCTCACGAGGCCGGCCC	-			P-0063711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	47	586	0	ENST00000327064.4:c.215_220+56del		p.X72_splice	ENST00000327064	NM_199141.1	72																																																																																
FAT1	2195	MSKCC	GRCh37	4	187584761	187584761	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	22	397	0	ENST00000441802.2:c.3272T>C	p.Ile1091Thr	p.I1091T	ENST00000441802	NM_005245.3	1091	aTa/aCa																																																																															
HGF	3082	MSKCC	GRCh37	7	81335613	81335613	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	31	399	0	ENST00000222390.5:c.1747A>G	p.Lys583Glu	p.K583E	ENST00000222390	NM_000601.4	583	Aag/Gag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101099	27101099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0063712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	92	616	0	ENST00000324856.7:c.4381C>T	p.Arg1461Ter	p.R1461*	ENST00000324856	NM_006015.4	1461	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519976		P-0063712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	113	597	0	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0063712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	69	335	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0063713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	87	508	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255631	16255631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	81	513	0	ENST00000375759.3:c.2896C>T	p.Pro966Ser	p.P966S	ENST00000375759	NM_015001.2	966	Cct/Tct																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64128657	64128657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	33	402	0	ENST00000334205.4:c.514G>A	p.Glu172Lys	p.E172K	ENST00000334205	NM_003942.2	172	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627766	187627766	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	60	445	0	ENST00000441802.2:c.3216del	p.Ile1073LeufsTer12	p.I1073Lfs*12	ENST00000441802	NM_005245.3	1072	tcC/tc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120257	94120257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063713-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	27	465	1	ENST00000369303.4:c.794G>T	p.Cys265Phe	p.C265F	ENST00000369303	NM_004440.3	265	tGc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0063714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	72	429	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105616	11105616	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	44	575	0	ENST00000344626.4:c.1532C>G	p.Thr511Arg	p.T511R	ENST00000344626	NM_003072.3	511	aCg/aGg																																																																															
APC	324	MSKCC	GRCh37	5	112111429	112111429	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	24	228	0	ENST00000257430.4:c.526G>T	p.Glu176Ter	p.E176*	ENST00000257430	NM_000038.5	176	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175387	112175397	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCAGACACC	GCTCAGACACC	-			P-0063714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	74	516	0	ENST00000257430.4:c.4096_4106del	p.Ala1366GlnfsTer5	p.A1366Qfs*5	ENST00000257430	NM_000038.5	1366	GCTCAGACACCc/c																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0063718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	174	768	0	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0063718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	221	742	0	ENST00000257430.4:c.4128T>A	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taA																																																																															
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0063718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	112	779	0	ENST00000257430.4:c.4063dup	p.Ser1355PhefsTer20	p.S1355Ffs*20	ENST00000257430	NM_000038.5	1353	-/T																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609849	117609849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	66	753	0	ENST00000368508.3:c.6850G>A	p.Gly2284Ser	p.G2284S	ENST00000368508	NM_002944.2	2284	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576857	7576858	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGT			P-0063718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	215	976	0	ENST00000269305.4:c.985_988dup	p.Leu330HisfsTer8	p.L330Hfs*8	ENST00000269305	NM_001126112.2	330	ctt/cACCCtt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874563	151874563	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0063718-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	154	835	0	ENST00000262189.6:c.7975G>T	p.Glu2659Ter	p.E2659*	ENST00000262189	NM_170606.2	2659	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0063742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	581	415	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242478	55242478	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913229		P-0063742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	460	387	0	ENST00000275493.2:c.2248G>C	p.Ala750Pro	p.A750P	ENST00000275493	NM_005228.3	750	Gca/Cca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242474	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGA	GAATTAAGA	-			P-0063742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	441	392	0	ENST00000275493.2:c.2239_2247del	p.Leu747_Glu749del	p.L747_E749del	ENST00000275493	NM_005228.3	746	GAATTAAGA/-																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43749814	43749814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063742-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1952	241	515	0	ENST00000523873.1:c.667C>T	p.Arg223Cys	p.R223C	ENST00000523873		223	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0063744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	148	577	2	ENST00000257430.4:c.3919dup	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519896		P-0063744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	288	536	0	ENST00000281708.4:c.1514G>A	p.Arg505His	p.R505H	ENST00000281708	NM_033632.3	505	cGc/cAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69058536	69058536	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61753703		P-0063744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	73	428	0	ENST00000288368.4:c.4180C>T	p.Arg1394Trp	p.R1394W	ENST00000288368	NM_024870.2	1394	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578175	7578175	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0063744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	295	665	0	ENST00000269305.4:c.672+2T>C		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89521694	89521694	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs150555764		P-0063744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	48	546	1	ENST00000336596.2:c.2771G>A	p.Trp924Ter	p.W924*	ENST00000336596	NM_005233.5	924	tGg/tAg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119624616	119624616	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	211	474	0	ENST00000316626.5:c.799G>C	p.Val267Leu	p.V267L	ENST00000316626		267	Gta/Cta																																																																															
APC	324	MSKCC	GRCh37	5	112164571	112164574	+	frameshift_variant	Frame_Shift_Del	DEL	AGGA	AGGA	-			P-0063744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	47	391	0	ENST00000257430.4:c.1646_1649del	p.Arg549IlefsTer8	p.R549Ifs*8	ENST00000257430	NM_000038.5	549	AGGAat/at																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0063765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	164	405	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0063765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	127	421	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044901	47044901	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	135	356	0	ENST00000329236.7:c.1993G>T	p.Glu665Ter	p.E665*	ENST00000329236	NM_001204466.1	665	Gag/Tag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434817	110434817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			831	67	543	0	ENST00000375856.3:c.3584G>A	p.Gly1195Glu	p.G1195E	ENST00000375856	NM_003749.2	1195	gGa/gAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140481397	140481397	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913376		P-0063765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	70	248	0	ENST00000288602.6:c.1411G>T	p.Val471Phe	p.V471F	ENST00000288602	NM_004333.4	471	Gtc/Ttc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031880	10031880	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765104792		P-0063765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	49	456	0	ENST00000330684.3:c.943G>A	p.Glu315Lys	p.E315K	ENST00000330684	NM_001134407.1	315	Gag/Aag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739128	40739128	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0063765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	39	372	0	ENST00000373198.4:c.3157-1G>A		p.X1053_splice	ENST00000373198	NM_133170.3	1053																																																																																
IGF1R	3480	MSKCC	GRCh37	15	99459900	99459900	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0063765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	42	314	0	ENST00000268035.6:c.1997-1G>C		p.X666_splice	ENST00000268035	NM_000875.3	666																																																																																
TGFBR2	7048	MSKCC	GRCh37	3	30713794	30713794	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			785	153	554	0	ENST00000359013.4:c.1194G>T	p.Met398Ile	p.M398I	ENST00000359013	NM_001024847.2	398	atG/atT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045134	47045134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	106	241	0	ENST00000329236.7:c.2141G>A	p.Arg714Gln	p.R714Q	ENST00000329236	NM_001204466.1	714	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0053781-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	137	949	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
EZH1	2145	MSKCC	GRCh37	17	40855818	40855818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053781-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	96	522	0	ENST00000428826.2:c.2038C>T	p.Arg680Trp	p.R680W	ENST00000428826		680	Cgg/Tgg																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156740	20156740	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0063072-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			154	95	352	0	ENST00000379607.5:c.17G>A	p.Gly6Asp	p.G6D	ENST00000379607	NM_001412.3	6	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105841	27105842	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGAA			P-0063072-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			326	112	907	0	ENST00000324856.7:c.5453_5456dup	p.Asn1820GlufsTer3	p.N1820Efs*3	ENST00000324856	NM_006015.4	1818	cag/cAGAAag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023725	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGGGAGGC	GGGGGGAGGC	-			P-0063072-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			219	185	910	0	ENST00000324856.7:c.824_833del	p.Gly275AlafsTer85	p.G275Afs*85	ENST00000324856	NM_006015.4	274	atGGGGGGAGGC/at																																																																															
STK11	6794	MSKCC	GRCh37	19	1219341	1219341	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0063389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	67	555	0	ENST00000326873.7:c.393C>G	p.Tyr131Ter	p.Y131*	ENST00000326873	NM_000455.4	131	taC/taG																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206716	36206716	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0063389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	54	651	0	ENST00000300305.3:c.796C>T	p.Gln266Ter	p.Q266*	ENST00000300305		266	Cag/Tag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341136	8341136	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	64	395	0	ENST00000356435.5:c.5080G>T	p.Val1694Leu	p.V1694L	ENST00000356435		1694	Gta/Tta																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98220449	98220449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	68	494	1	ENST00000331920.6:c.3014G>T	p.Gly1005Val	p.G1005V	ENST00000331920	NM_000264.3	1005	gGg/gTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231421	98231421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	69	505	0	ENST00000331920.6:c.1862G>A	p.Arg621Lys	p.R621K	ENST00000331920	NM_000264.3	621	aGa/aAa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600331	10600331	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	CC			P-0063389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	169	619	0	ENST00000171111.5:c.1524delinsGG	p.Ser508ArgfsTer19	p.S508Rfs*19	ENST00000171111	NM_203500.1	508	agC/agGG																																																																															
USP8	9101	MSKCC	GRCh37	15	50782608	50782608	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			883	203	706	0	ENST00000307179.4:c.2120A>G	p.Asp707Gly	p.D707G	ENST00000307179		707	gAt/gGt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244954	41244956	+	inframe_deletion	In_Frame_Del	DEL	TTT	TTT	-			P-0063614-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	136	722	0	ENST00000357654.3:c.2592_2594del	p.Lys865del	p.K865del	ENST00000357654	NM_007294.3	864	tcAAAg/tcg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686994	37686994	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769197936		P-0063616-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	35	648	0	ENST00000447079.4:c.3898G>A	p.Ala1300Thr	p.A1300T	ENST00000447079	NM_015083.1	1300	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0063658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	10	317	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108154986	108154986	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063658-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	16	299	0	ENST00000278616.4:c.3779T>A	p.Val1260Glu	p.V1260E	ENST00000278616	NM_000051.3	1260	gTg/gAg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46738374	46738374	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	80	677	0	ENST00000371975.4:c.1275G>C	p.Lys425Asn	p.K425N	ENST00000371975	NM_003579.3	425	aaG/aaC																																																																															
JUN	3725	MSKCC	GRCh37	1	59248385	59248385	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs370449022		P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	71	829	0	ENST00000371222.2:c.358G>T	p.Glu120Ter	p.E120*	ENST00000371222	NM_002228.3	120	Gaa/Taa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913237		P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	64	494	0	ENST00000369535.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000369535	NM_002524.4	12	gGt/gCt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120508147	120508147	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	55	552	0	ENST00000256646.2:c.1610C>A	p.Ser537Tyr	p.S537Y	ENST00000256646	NM_024408.3	537	tCc/tAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18650571	18650571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	45	460	0	ENST00000266497.5:c.2782C>A	p.Gln928Lys	p.Q928K	ENST00000266497		928	Cag/Aag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245225	46245225	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	62	685	0	ENST00000334344.6:c.3319G>T	p.Ala1107Ser	p.A1107S	ENST00000334344	NM_152641.2	1107	Gca/Tca																																																																															
POLE	5426	MSKCC	GRCh37	12	133202707	133202707	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	78	683	0	ENST00000320574.5:c.6527C>G	p.Ser2176Ter	p.S2176*	ENST00000320574	NM_006231.2	2176	tCa/tGa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437157	110437157	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	28	413	0	ENST00000375856.3:c.1244A>T	p.Lys415Met	p.K415M	ENST00000375856	NM_003749.2	415	aAg/aTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2130215	2130215	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	64	835	0	ENST00000219476.3:c.3447C>G	p.Phe1149Leu	p.F1149L	ENST00000219476	NM_000548.3	1149	ttC/ttG																																																																															
CDH1	999	MSKCC	GRCh37	16	68842735	68842735	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201511530		P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	68	566	0	ENST00000261769.5:c.671G>A	p.Arg224His	p.R224H	ENST00000261769	NM_004360.3	224	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	16	555	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577578	7577578	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	64	563	0	ENST00000269305.4:c.703A>G	p.Asn235Asp	p.N235D	ENST00000269305	NM_001126112.2	235	Aac/Gac																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690489	33690489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	55	687	0	ENST00000308377.4:c.338G>A	p.Gly113Asp	p.G113D	ENST00000308377	NM_152270.3	113	gGc/gAc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489452	40489452	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	33	532	0	ENST00000264657.5:c.797+1G>C		p.X266_splice	ENST00000264657	NM_139276.2	266																																																																																
SOX9	6662	MSKCC	GRCh37	17	70119783	70119783	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs138685561		P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	53	610	0	ENST00000245479.2:c.785G>T	p.Gly262Val	p.G262V	ENST00000245479	NM_000346.3	262	gGg/gTg																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732418	74732418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			752	43	732	0	ENST00000359995.5:c.491G>A	p.Arg164Lys	p.R164K	ENST00000359995	NM_001195427.1	164	aGa/aAa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220382	1220382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	78	697	0	ENST00000326873.7:c.475C>T	p.Gln159Ter	p.Q159*	ENST00000326873	NM_000455.4	159	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610126	10610126	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	74	704	0	ENST00000171111.5:c.584G>T	p.Gly195Val	p.G195V	ENST00000171111	NM_203500.1	195	gGc/gTc																																																																															
ALK	238	MSKCC	GRCh37	2	29419727	29419727	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	25	494	0	ENST00000389048.3:c.4074-1G>A		p.X1358_splice	ENST00000389048	NM_004304.4	1358																																																																																
MSH6	2956	MSKCC	GRCh37	2	48010526	48010526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	33	714	0	ENST00000234420.5:c.154G>A	p.Glu52Lys	p.E52K	ENST00000234420	NM_000179.2	52	Gag/Aag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52623229	52623229	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	55	524	1	ENST00000394830.3:c.2822C>A	p.Ser941Ter	p.S941*	ENST00000394830	NM_018313.4	941	tCa/tAa																																																																															
KDR	3791	MSKCC	GRCh37	4	55955589	55955589	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	29	468	0	ENST00000263923.4:c.3356T>C	p.Leu1119Ser	p.L1119S	ENST00000263923	NM_002253.2	1119	tTg/tCg																																																																															
APC	324	MSKCC	GRCh37	5	112175558	112175558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	40	615	0	ENST00000257430.4:c.4267C>A	p.Leu1423Ile	p.L1423I	ENST00000257430	NM_000038.5	1423	Ctt/Att																																																																															
E2F3	1871	MSKCC	GRCh37	6	20487009	20487009	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	26	482	0	ENST00000346618.3:c.974G>C	p.Arg325Thr	p.R325T	ENST00000346618	NM_001949.4	325	aGa/aCa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056650	26056650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	89	577	0	ENST00000343677.2:c.7G>A	p.Glu3Lys	p.E3K	ENST00000343677	NM_005319.3	3	Gag/Aag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671278	30671278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	37	772	0	ENST00000376406.3:c.5599G>T	p.Asp1867Tyr	p.D1867Y	ENST00000376406	NM_014641.2	1867	Gac/Tac																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168711	32168711	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	128	710	0	ENST00000375023.3:c.4212C>A	p.Asp1404Glu	p.D1404E	ENST00000375023	NM_004557.3	1404	gaC/gaA																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289023	33289023	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	125	841	0	ENST00000374542.5:c.529C>G	p.Gln177Glu	p.Q177E	ENST00000374542	NM_001141970.1	177	Cag/Gag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956617	93956617	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	46	632	0	ENST00000369303.4:c.2619G>A	p.Trp873Ter	p.W873*	ENST00000369303	NM_004440.3	873	tgG/tgA																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956676	93956676	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1465960814		P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	24	518	0	ENST00000369303.4:c.2560C>T	p.Arg854Cys	p.R854C	ENST00000369303	NM_004440.3	854	Cgt/Tgt																																																																															
LYN	4067	MSKCC	GRCh37	8	56910981	56910981	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	52	552	0	ENST00000519728.1:c.1127C>G	p.Ser376Cys	p.S376C	ENST00000519728	NM_002350.3	376	tCc/tGc																																																																															
PHF6	84295	MSKCC	GRCh37	X	133511724	133511724	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063659-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	20	425	0	ENST00000332070.3:c.77A>G	p.Lys26Arg	p.K26R	ENST00000332070	NM_032458.2	26	aAg/aGg																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs869320707		P-0063669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	139	603	0	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53241019	53241019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	45	540	0	ENST00000375401.3:c.1192G>A	p.Gly398Ser	p.G398S	ENST00000375401	NM_004187.3	398	Ggc/Agc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0063671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	91	285	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0063671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	248	418	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519739		P-0063671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	74	533	0	ENST00000342988.3:c.1051G>C	p.Asp351His	p.D351H	ENST00000342988	NM_005359.5	351	Gat/Cat																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46277765	46277765	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774124954		P-0063671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	159	364	0	ENST00000371998.3:c.3563G>A	p.Arg1188Gln	p.R1188Q	ENST00000371998		1188	cGa/cAa																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29444454	29444454	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	86	456	0	ENST00000544604.2:c.994del	p.His332ThrfsTer7	p.H332Tfs*7	ENST00000544604	NM_001206998.1	330	tgC/tg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942110	17942110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	85	408	0	ENST00000458235.1:c.2905G>A	p.Gly969Ser	p.G969S	ENST00000458235	NM_000215.3	969	Ggc/Agc																																																																															
ATR	545	MSKCC	GRCh37	3	142277583	142277593	+	frameshift_variant	Frame_Shift_Del	DEL	AATCTTCCAGG	AATCTTCCAGG	-			P-0063671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	68	309	0	ENST00000350721.4:c.1758_1768del	p.Leu587MetfsTer14	p.L587Mfs*14	ENST00000350721	NM_001184.3	586	atCCTGGAAGATTta/atta																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063721-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	193	741	0	ENST00000347630.2:c.393G>C	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgC																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43705396	43705396	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063721-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	236	977	0	ENST00000382044.4:c.5226del	p.Met1743TrpfsTer67	p.M1743Wfs*67	ENST00000382044	NM_001141980.1	1742	acC/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0063728-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	288	916	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002842-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			899	69	459	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270112	66270112	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002842-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			663	42	440	0	ENST00000273854.3:c.1770C>G	p.Ile590Met	p.I590M	ENST00000273854	NM_004439.5	590	atC/atG																																																																															
SMO	6608	MSKCC	GRCh37	7	128846426	128846426	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0002842-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			421	33	297	0	ENST00000249373.3:c.1262G>T	p.Arg421Leu	p.R421L	ENST00000249373	NM_005631.4	421	cGa/cTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874136	151874136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002842-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			974	62	517	0	ENST00000262189.6:c.8402A>G	p.Asn2801Ser	p.N2801S	ENST00000262189	NM_170606.2	2801	aAc/aGc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742486	145742486	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62530445		P-0002842-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			615	37	329	1	ENST00000428558.2:c.302C>T	p.Ser101Leu	p.S101L	ENST00000428558	NM_004260.3	101	tCg/tTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438025	49438025	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002842-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			745	60	466	0	ENST00000301067.7:c.5146G>T	p.Ala1716Ser	p.A1716S	ENST00000301067	NM_003482.3	1716	Gca/Tca																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245759	41245759	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs55650082		P-0002842-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			838	94	524	0	ENST00000357654.3:c.1789G>T	p.Glu597Ter	p.E597*	ENST00000357654	NM_007294.3	597	Gaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108114772	108114772	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002842-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			745	120	455	0	ENST00000278616.4:c.590del	p.Gly197AspfsTer9	p.G197Dfs*9	ENST00000278616	NM_000051.3	197	Gga/ga																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0009377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	201	329	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0009377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	195	301	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	277	397	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577524	7577525	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAG			P-0009377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	209	393	0	ENST00000269305.4:c.754_756dup	p.Leu252dup	p.L252dup	ENST00000269305	NM_001126112.2	252	-/CTC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	241	347	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
GREM1	26585	MSKCC	GRCh37	15	33022899	33022899	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868208266		P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	81	302	2	ENST00000300177.4:c.8G>A	p.Arg3His	p.R3H	ENST00000300177	NM_001191322.1	3	cGc/cAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602667	10602667	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	551	868	0	ENST00000171111.5:c.911T>A	p.Ile304Asn	p.I304N	ENST00000171111	NM_203500.1	304	aTc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	185	461	0	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153249469	153249469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	173	465	1	ENST00000281708.4:c.1309G>A	p.Gly437Arg	p.G437R	ENST00000281708	NM_033632.3	437	Gga/Aga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877427	40877427	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	170	514	0	ENST00000373198.4:c.2269G>T	p.Glu757Ter	p.E757*	ENST00000373198	NM_133170.3	757	Gag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945075	151945075	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs762187073		P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	55	413	0	ENST00000262189.6:c.2444C>A	p.Thr815Asn	p.T815N	ENST00000262189	NM_170606.2	815	aCt/aAt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714594	52714594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	292	750	0	ENST00000322088.6:c.352G>A	p.Glu118Lys	p.E118K	ENST00000322088	NM_014225.5	118	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115981	8115981	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	152	344	0	ENST00000346208.3:c.1327G>T	p.Gly443Cys	p.G443C	ENST00000346208		443	Ggt/Tgt																																																																															
RET	5979	MSKCC	GRCh37	10	43608362	43608362	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs144015580		P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	362	812	0	ENST00000355710.3:c.1710C>A	p.Cys570Ter	p.C570*	ENST00000355710	NM_020975.4	570	tgC/tgA																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244313	46244313	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	289	355	1	ENST00000334344.6:c.2408del	p.Gly803AlafsTer19	p.G803Afs*19	ENST00000334344	NM_152641.2	803	Ggc/gc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646297	3646297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	189	802	1	ENST00000294008.3:c.1781G>T	p.Gly594Val	p.G594V	ENST00000294008	NM_032444.2	594	gGc/gTc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778918	3778918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	324	671	0	ENST00000262367.5:c.6130G>T	p.Ala2044Ser	p.A2044S	ENST00000262367	NM_004380.2	2044	Gcc/Tcc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992619	72992619	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	103	473	1	ENST00000268489.5:c.1426G>T	p.Glu476Ter	p.E476*	ENST00000268489	NM_006885.3	476	Gag/Tag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657587	37657587	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	226	494	0	ENST00000447079.4:c.2504A>T	p.His835Leu	p.H835L	ENST00000447079	NM_015083.1	835	cAt/cTt																																																																															
EZH1	2145	MSKCC	GRCh37	17	40865266	40865266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	293	565	0	ENST00000428826.2:c.1165G>T	p.Asp389Tyr	p.D389Y	ENST00000428826		389	Gac/Tac																																																																															
ALK	238	MSKCC	GRCh37	2	29606722	29606722	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	99	431	0	ENST00000389048.3:c.1158G>T	p.Trp386Cys	p.W386C	ENST00000389048	NM_004304.4	386	tgG/tgT																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655164	45655164	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	211	453	0	ENST00000407780.3:c.688A>T	p.Ser230Cys	p.S230C	ENST00000407780	NM_001283052.1	230	Agc/Tgc																																																																															
ATR	545	MSKCC	GRCh37	3	142281546	142281546	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	219	437	0	ENST00000350721.4:c.698G>T	p.Gly233Val	p.G233V	ENST00000350721	NM_001184.3	233	gGt/gTt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143067053	143067053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	89	282	1	ENST00000262992.4:c.1660G>T	p.Gly554Cys	p.G554C	ENST00000262992	NM_001101669.1	554	Ggc/Tgc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754287	57754287	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	85	343	0	ENST00000274289.3:c.564G>T	p.Gln188His	p.Q188H	ENST00000274289	NM_006622.3	188	caG/caT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508241	106508241	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763784435		P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	204	487	0	ENST00000359195.3:c.235C>A	p.Leu79Met	p.L79M	ENST00000359195	NM_002649.2	79	Ctg/Atg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69031722	69031722	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	303	426	0	ENST00000288368.4:c.3477T>A	p.His1159Gln	p.H1159Q	ENST00000288368	NM_024870.2	1159	caT/caA																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737651	145737651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	546	884	3	ENST00000428558.2:c.3112C>A	p.Arg1038Ser	p.R1038S	ENST00000428558	NM_004260.3	1038	Cgc/Agc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239885	53239885	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	294	304	0	ENST00000375401.3:c.1556G>C	p.Trp519Ser	p.W519S	ENST00000375401	NM_004187.3	519	tGg/tCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0063275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	21	226	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106022	8106022	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	63	624	0	ENST00000346208.3:c.842A>G	p.His281Arg	p.H281R	ENST00000346208		281	cAc/cGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0063379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	128	484	0	ENST00000346208.3:c.1003dup	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347782	347782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			815	164	605	0	ENST00000262320.3:c.1724C>T	p.Ser575Phe	p.S575F	ENST00000262320	NM_003502.3	575	tCc/tTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106587	27106588	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATCTCGGGGCAGTTGGACCTATCTCCATACCCCGAGAGCAT			P-0063379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			758	100	648	0	ENST00000324856.7:c.6199_6239dup	p.Cys2081SerfsTer68	p.C2081Sfs*68	ENST00000324856	NM_006015.4	2066	-/ATCTCGGGGCAGTTGGACCTATCTCCATACCCCGAGAGCAT																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628275	90628275	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0063379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	194	725	0	ENST00000330062.3:c.1136T>A	p.Leu379Gln	p.L379Q	ENST00000330062	NM_002168.2	379	cTg/cAg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138253	2138253	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760395277		P-0063379-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	160	659	0	ENST00000219476.3:c.5186G>A	p.Arg1729His	p.R1729H	ENST00000219476	NM_000548.3	1729	cGc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0063673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	136	382	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TC			P-0057564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			859	24	492	0	ENST00000256078.4:c.180_181inv	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggGAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0061570-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			432	198	753	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
KDR	3791	MSKCC	GRCh37	4	55976857	55976857	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151317075		P-0061570-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			339	147	611	0	ENST00000263923.4:c.1055C>T	p.Ala352Val	p.A352V	ENST00000263923	NM_002253.2	352	gCg/gTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974780	21974780	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061570-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			407	140	678	0	ENST00000304494.5:c.47T>A	p.Leu16Gln	p.L16Q	ENST00000304494	NM_000077.4	16	cTg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0061570-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			290	86	391	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			266	413	449	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137021	64137021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			464	263	418	1	ENST00000334205.4:c.1532G>A	p.Arg511His	p.R511H	ENST00000334205	NM_003942.2	511	cGc/cAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602292	10602292	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			244	312	493	0	ENST00000171111.5:c.1286G>T	p.Gly429Val	p.G429V	ENST00000171111	NM_203500.1	429	gGc/gTc																																																																															
KDR	3791	MSKCC	GRCh37	4	55964433	55964433	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0062109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			231	278	362	0	ENST00000263923.4:c.2380G>T	p.Gly794Ter	p.G794*	ENST00000263923	NM_002253.2	794	Gga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1220409	1220409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			203	280	504	0	ENST00000326873.7:c.502C>T	p.His168Tyr	p.H168Y	ENST00000326873	NM_000455.4	168	Cat/Tat																																																																															
KIT	3815	MSKCC	GRCh37	4	55561794	55561794	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			484	39	380	0	ENST00000288135.5:c.184G>T	p.Gly62Cys	p.G62C	ENST00000288135	NM_000222.2	62	Ggc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306544	41306544	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			332	243	311	0	ENST00000373198.4:c.1115C>A	p.Pro372Gln	p.P372Q	ENST00000373198	NM_133170.3	372	cCg/cAg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946789	71946789	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			501	329	541	0	ENST00000298229.2:c.2730G>T	p.Gln910His	p.Q910H	ENST00000298229	NM_001567.3	910	caG/caT																																																																															
ATM	472	MSKCC	GRCh37	11	108154972	108154972	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			228	143	238	1	ENST00000278616.4:c.3765G>T	p.Leu1255Phe	p.L1255F	ENST00000278616	NM_000051.3	1255	ttG/ttT																																																																															
MGA	23269	MSKCC	GRCh37	15	41961231	41961231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	258	388	0	ENST00000219905.7:c.139G>T	p.Ala47Ser	p.A47S	ENST00000219905	NM_001164273.1	47	Gcc/Tcc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858375	9858375	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			476	174	401	0	ENST00000330684.3:c.3026G>T	p.Arg1009Ile	p.R1009I	ENST00000330684	NM_001134407.1	1009	aGa/aTa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212495236	212495236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			259	237	334	0	ENST00000342788.4:c.2030G>T	p.Arg677Met	p.R677M	ENST00000342788	NM_005235.2	677	aGg/aTg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749499	41749499	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28939715		P-0062109-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			159	226	291	0	ENST00000226382.2:c.296G>T	p.Arg99Leu	p.R99L	ENST00000226382	NM_003924.3	99	cGg/cTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0062646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	476	461	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	450	587	0	ENST00000269305.4:c.398T>A	p.Met133Lys	p.M133K	ENST00000269305	NM_001126112.2	133	aTg/aAg																																																																															
CBFB	865	MSKCC	GRCh37	16	67100603	67100603	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	323	467	0	ENST00000412916.2:c.301A>G	p.Met101Val	p.M101V	ENST00000412916		101	Atg/Gtg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117714441	117714441	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	51	447	0	ENST00000368508.3:c.1208T>C	p.Ile403Thr	p.I403T	ENST00000368508	NM_002944.2	403	aTt/aCt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912345	32912346	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs901733203		P-0062646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	27	449	0	ENST00000380152.3:c.3860dup	p.Asn1287LysfsTer2	p.N1287Kfs*2	ENST00000380152		1285	gaa/gAaa																																																																															
TET1	80312	MSKCC	GRCh37	10	70405019	70405019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	447	545	0	ENST00000373644.4:c.2533C>T	p.His845Tyr	p.H845Y	ENST00000373644	NM_030625.2	845	Cat/Tat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424072	49424072	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	305	365	0	ENST00000301067.7:c.13990del	p.Ala4664HisfsTer2	p.A4664Hfs*2	ENST00000301067	NM_003482.3	4664	Gca/ca																																																																															
FLT1	2321	MSKCC	GRCh37	13	29005304	29005304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	153	410	0	ENST00000282397.4:c.957C>A	p.Phe319Leu	p.F319L	ENST00000282397	NM_002019.4	319	ttC/ttA																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929317	32929317	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	223	504	0	ENST00000380152.3:c.7327G>C	p.Asp2443His	p.D2443H	ENST00000380152		2443	Gat/Cat																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016673	12016673	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0062646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	367	464	0	ENST00000353533.5:c.809T>A	p.Met270Lys	p.M270K	ENST00000353533	NM_003010.3	270	aTg/aAg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2164202	2164202	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs780708540		P-0062646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	46	394	0	ENST00000398665.3:c.19C>G	p.Leu7Val	p.L7V	ENST00000398665	NM_032482.2	7	Ctg/Gtg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637618	176637618	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752771282		P-0062646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	250	624	0	ENST00000439151.2:c.2218C>T	p.His740Tyr	p.H740Y	ENST00000439151	NM_022455.4	740	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0062820-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	77	552	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913381		P-0062820-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			512	65	657	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350272	89350272	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1298734986		P-0062820-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			614	112	654	0	ENST00000301030.4:c.2678G>A	p.Arg893Gln	p.R893Q	ENST00000301030	NM_001256183.1	893	cGg/cAg																																																																															
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786202457		P-0062820-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			207	52	380	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29677260	29677260	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062820-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			229	43	372	0	ENST00000358273.4:c.7381C>G	p.Leu2461Val	p.L2461V	ENST00000358273	NM_001042492.2	2461	Ctt/Gtt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11118692	11118692	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062820-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			476	39	443	0	ENST00000344626.4:c.2116A>T	p.Ile706Phe	p.I706F	ENST00000344626	NM_003072.3	706	Atc/Ttc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664953	138664953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062820-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			497	85	456	0	ENST00000330315.3:c.612G>C	p.Trp204Cys	p.W204C	ENST00000330315	NM_023067.3	204	tgG/tgC																																																																															
ROS1	6098	MSKCC	GRCh37	6	117717381	117717381	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0062820-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			317	88	404	0	ENST00000368508.3:c.826G>T	p.Glu276Ter	p.E276*	ENST00000368508	NM_002944.2	276	Gaa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28929495		P-0062982-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			283	6250	364	0	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0062982-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			160	780	464	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0062982-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			297	6450	303	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
RB1	5925	MSKCC	GRCh37	13	49039219	49039219	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062982-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			112	308	202	1	ENST00000267163.4:c.2297C>G	p.Thr766Arg	p.T766R	ENST00000267163	NM_000321.2	766	aCa/aGa																																																																															
RB1	5925	MSKCC	GRCh37	13	49039187	49039187	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062982-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			100	269	171	0	ENST00000267163.4:c.2265C>G	p.Phe755Leu	p.F755L	ENST00000267163	NM_000321.2	755	ttC/ttG																																																																															
RB1	5925	MSKCC	GRCh37	13	49039174	49039174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062982-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			92	250	154	0	ENST00000267163.4:c.2252C>T	p.Ser751Phe	p.S751F	ENST00000267163	NM_000321.2	751	tCt/tTt																																																																															
RB1	5925	MSKCC	GRCh37	13	49039240	49039241	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0062982-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			102	284	205	0	ENST00000267163.4:c.2318_2319delinsTT	p.Ser773Phe	p.S773F	ENST00000267163	NM_000321.2	773	tCC/tTT																																																																															
RB1	5925	MSKCC	GRCh37	13	49039139	49039139	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062982-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			67	192	116	0	ENST00000267163.4:c.2217C>G	p.Phe739Leu	p.F739L	ENST00000267163	NM_000321.2	739	ttC/ttG																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542851	187542851	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0062982-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			115	419	304	0	ENST00000441802.2:c.4889A>T	p.Gln1630Leu	p.Q1630L	ENST00000441802	NM_005245.3	1630	cAa/cTa																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793799	89793799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062982-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			538	240	339	0	ENST00000336032.3:c.868C>T	p.Pro290Ser	p.P290S	ENST00000336032	NM_006813.2	290	Cct/Tct																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2047249	2047249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062982-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			195	42	99	0	ENST00000349721.2:c.811G>A	p.Gly271Ser	p.G271S	ENST00000349721	NM_003070.3	271	Ggc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0062998-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1393	34	473	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0062998-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			238	360	431	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249009	55249010	+	inframe_insertion	In_Frame_Ins	INS	-	-	GACAACCCC			P-0062998-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			671	920	506	0	ENST00000275493.2:c.2308_2316dup	p.Asp770_Pro772dup	p.D770_P772dup	ENST00000275493	NM_005228.3	770	-/GACAACCCC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249092	55249092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062998-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1280	138	465	0	ENST00000275493.2:c.2390G>C	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	tGc/tCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249019	55249019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062998-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			457	1046	500	0	ENST00000275493.2:c.2317C>T	p.His773Tyr	p.H773Y	ENST00000275493	NM_005228.3	773	Cac/Tac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105901	27105901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062998-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			564	336	545	0	ENST00000324856.7:c.5512G>A	p.Asp1838Asn	p.D1838N	ENST00000324856	NM_006015.4	1838	Gac/Aac																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015093	37015093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062998-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			764	42	476	1	ENST00000358127.4:c.311G>A	p.Arg104His	p.R104H	ENST00000358127	NM_001280556.1	104	cGc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0063245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			249	552	473	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0063245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	221	575	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971155	21971155	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060501260		P-0063245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			442	126	812	0	ENST00000304494.5:c.203C>T	p.Ala68Val	p.A68V	ENST00000304494	NM_000077.4	68	gCg/gTg																																																																															
GAB1	2549	MSKCC	GRCh37	4	144258384	144258385	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755581817		P-0063245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			780	119	621	2	ENST00000262994.4:c.50dup	p.Glu18GlyfsTer34	p.E18Gfs*34	ENST00000262994	NM_002039.3	15	tcc/tCcc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163328	47163328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	123	638	0	ENST00000409792.3:c.2798G>A	p.Gly933Asp	p.G933D	ENST00000409792	NM_014159.6	933	gGt/gAt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929350	44929354	+	frameshift_variant	Frame_Shift_Ins	INS	CTTCA	CTTCA	TCTTCACCAT			P-0063245-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			322	122	381	0	ENST00000377967.4:c.2450_2454delinsTCTTCACCAT	p.Ser817PhefsTer52	p.S817Ffs*52	ENST00000377967	NM_021140.2	817	tCTTCA/tTCTTCACCAT																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43745332	43745332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762664023		P-0063413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	1039	561	13	ENST00000523873.1:c.245G>A	p.Arg82Gln	p.R82Q	ENST00000523873		82	cGa/cAa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	341275	341275	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1219986773		P-0063413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	193	350	2	ENST00000262320.3:c.2209C>T	p.Arg737Trp	p.R737W	ENST00000262320	NM_003502.3	737	Cgg/Tgg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096524	178096524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	285	380	2	ENST00000397062.3:c.807C>A	p.Asn269Lys	p.N269K	ENST00000397062	NM_006164.4	269	aaC/aaA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541306	187541306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	220	374	5	ENST00000441802.2:c.6434C>A	p.Thr2145Asn	p.T2145N	ENST00000441802	NM_005245.3	2145	aCc/aAc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230668	46230668	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0063415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	108	352	0	ENST00000334344.6:c.917T>A	p.Leu306Ter	p.L306*	ENST00000334344	NM_152641.2	306	tTg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0063415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	150	452	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998924	11998928	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAC	AAAAC	-			P-0063415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	41	282	0	ENST00000353533.5:c.428_432del	p.Lys143ThrfsTer12	p.K143Tfs*12	ENST00000353533	NM_003010.3	142	caAAAACaa/caaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	118	345	0	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0063415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	33	292	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519378	176519378	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148292303		P-0063415-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	37	445	0	ENST00000292408.4:c.784G>A	p.Val262Met	p.V262M	ENST00000292408	NM_213647.1	262	Gtg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0063426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	956	454	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0063426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	76	698	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792732	33792737	+	inframe_deletion	In_Frame_Del	DEL	GCGGGT	GCGGGT	-	rs1002805239		P-0063426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	9	391	1	ENST00000498907.2:c.584_589del	p.His195_Pro196del	p.H195_P196del	ENST00000498907	NM_004364.3	195	cACCCGCcg/ccg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020669	37020669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	24	517	0	ENST00000358127.4:c.176G>A	p.Arg59Gln	p.R59Q	ENST00000358127	NM_001280556.1	59	cGg/cAg																																																																															
FH	2271	MSKCC	GRCh37	1	241682991	241682991	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1226883651		P-0063431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			773	173	493	0	ENST00000366560.3:c.32C>G	p.Ser11Trp	p.S11W	ENST00000366560	NM_000143.3	11	tCg/tGg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692901	89692901	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	120	279	0	ENST00000371953.3:c.385G>C	p.Gly129Arg	p.G129R	ENST00000371953	NM_000314.4	129	Gga/Cga																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941200	71941200	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	259	732	0	ENST00000298229.2:c.975G>C	p.Lys325Asn	p.K325N	ENST00000298229	NM_001567.3	325	aaG/aaC																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646346	3646346	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1202254236		P-0063431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			778	111	567	0	ENST00000294008.3:c.1732G>C	p.Glu578Gln	p.E578Q	ENST00000294008	NM_032444.2	578	Gag/Cag																																																																															
CDH1	999	MSKCC	GRCh37	16	68849631	68849631	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	230	487	0	ENST00000261769.5:c.1534G>T	p.Glu512Ter	p.E512*	ENST00000261769	NM_004360.3	512	Gag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120527	70120527	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0063431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	234	595	0	ENST00000245479.2:c.1529G>C	p.Ter510SerextTer49	p.*510Sext*49	ENST00000245479	NM_000346.3	510	tGa/tCa																																																																															
TOP1	7150	MSKCC	GRCh37	20	39713113	39713113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	98	287	0	ENST00000361337.2:c.519G>T	p.Leu173Phe	p.L173F	ENST00000361337	NM_003286.2	173	ttG/ttT																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940438	49940438	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	99	645	0	ENST00000296474.3:c.605C>A	p.Ser202Ter	p.S202*	ENST00000296474	NM_002447.2	202	tCa/tAa																																																																															
KDR	3791	MSKCC	GRCh37	4	55948174	55948174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	114	309	0	ENST00000263923.4:c.3797C>T	p.Ser1266Leu	p.S1266L	ENST00000263923	NM_002253.2	1266	tCa/tTa																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045649	26045649	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	206	555	0	ENST00000540144.1:c.11C>G	p.Thr4Arg	p.T4R	ENST00000540144	NM_003531.2	4	aCg/aGg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101895013	101895013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063431-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	154	404	0	ENST00000374994.4:c.566C>A	p.Ser189Tyr	p.S189Y	ENST00000374994	NM_004612.2	189	tCt/tAt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845935	156845935	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			705	265	835	0	ENST00000524377.1:c.1565G>T	p.Gly522Val	p.G522V	ENST00000524377	NM_002529.3	522	gGg/gTg																																																																															
YAP1	10413	MSKCC	GRCh37	11	101984941	101984941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	92	250	0	ENST00000282441.5:c.388G>T	p.Ala130Ser	p.A130S	ENST00000282441	NM_001130145.2	130	Gct/Tct																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641388	18641389	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0063433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	119	463	0	ENST00000266497.5:c.2393dup	p.Asn798LysfsTer5	p.N798Kfs*5	ENST00000266497		796	cta/ctAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579316	7579317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0063433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	194	605	0	ENST00000269305.4:c.370dup	p.Cys124LeufsTer25	p.C124Lfs*25	ENST00000269305	NM_001126112.2	124	tgc/tTgc																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66518987	66518987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	232	570	0	ENST00000358598.2:c.268G>A	p.Val90Met	p.V90M	ENST00000358598	NM_212471.2	90	Gtg/Atg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374918	45374918	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0063433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	166	536	0	ENST00000262160.6:c.925G>T	p.Glu309Ter	p.E309*	ENST00000262160	NM_005901.5	309	Gag/Tag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276311	15276311	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754537422		P-0063433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	194	563	0	ENST00000263388.2:c.5683C>T	p.Arg1895Cys	p.R1895C	ENST00000263388	NM_000435.2	1895	Cgc/Tgc																																																																															
ALK	238	MSKCC	GRCh37	2	30143409	30143409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	136	544	0	ENST00000389048.3:c.117G>T	p.Gln39His	p.Q39H	ENST00000389048	NM_004304.4	39	caG/caT																																																																															
ATR	545	MSKCC	GRCh37	3	142204006	142204006	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs886058052		P-0063433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	157	451	0	ENST00000350721.4:c.6197G>A	p.Arg2066Gln	p.R2066Q	ENST00000350721	NM_001184.3	2066	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0063433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	98	367	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1962801	1962801	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772470710		P-0063433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	205	582	2	ENST00000382895.3:c.3295G>A	p.Glu1099Lys	p.E1099K	ENST00000382895	NM_133330.2	1099	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0063433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	61	404	2	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112154715	112154716	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0063433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	120	435	0	ENST00000257430.4:c.988_989del	p.Met330ValfsTer9	p.M330Vfs*9	ENST00000257430	NM_000038.5	329	gAT/g																																																																															
APC	324	MSKCC	GRCh37	5	112175930	112175930	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	182	536	0	ENST00000257430.4:c.4639G>T	p.Glu1547Ter	p.E1547*	ENST00000257430	NM_000038.5	1547	Gaa/Taa																																																																															
HGF	3082	MSKCC	GRCh37	7	81358944	81358944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063433-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	284	422	0	ENST00000222390.5:c.1017G>T	p.Met339Ile	p.M339I	ENST00000222390	NM_000601.4	339	atG/atT																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0063437-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			82	109	470	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0063437-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			96	119	544	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998898	11998898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063437-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			77	101	369	0	ENST00000353533.5:c.400C>T	p.Arg134Trp	p.R134W	ENST00000353533	NM_003010.3	134	Cgg/Tgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914137	32914137	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs80358785		P-0063437-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	16	463	0	ENST00000380152.3:c.5645C>A	p.Ser1882Ter	p.S1882*	ENST00000380152		1882	tCa/tAa																																																																															
ETV6	2120	MSKCC	GRCh37	12	11905432	11905432	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34966596		P-0063437-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			384	185	466	0	ENST00000396373.4:c.82G>A	p.Ala28Thr	p.A28T	ENST00000396373	NM_001987.4	28	Gct/Act																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437592	56437592	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063437-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			57	231	563	0	ENST00000407977.2:c.870C>G	p.Cys290Trp	p.C290W	ENST00000407977		290	tgC/tgG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55270215	55271237	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGCTGTCCCATCAAGGAAGACAGCTTCTTGCAGCGATACAGCTCAGACCCCACAGGCGCCTTGACTGAGGACAGCATAGACGACACCTTCCTCCCAGTGCCTGGTGAGTGGCTTGTCTGGAAACAGTCCTGCTCCTCAACCTCCTCGACCCACTCAGCAGCAGCCAGTCTCCAGTGTCCAAGCCAGGTGCTCCCTCCAGCATCTCCAGAGGGGGAAACAGTGGCAGATTTGCAGACACAGTGAAGGGCGTAAGGAGCAGATAAACACATGACCGAGCCTGCACAAGCTCTTTGTTGTGTCTGGTTGTTTGCTGTACCTCTGTTGTAAGAATGAATCTGCAAAATTTCTAGCTTATGAAGCAAATCACGGACATACACATCTGTGTGTGTGAGTGTTCATGATGTGTGTACATCTGTGTATGTGTGTGTGTGTATGTGTGTGTTTGTGACAGATTTGATCCCTGTTCTCTCTGCTGGCTCTATCTTGACCTGTGAAACGTATATTTAACTAATTAAATATTAGTTAATATTAATAAATTTTAAGCTTTATCCAGATACTCATAACCTGCTAACACACACACATATACACACACATACACATACACACATATACACACACCACACACATACACAGACACCACACACATACCATACACAGACACATACACATGCACACACATATACACACACACCTCAAATACATACACACCACACACACATACATGTATACACACATACACACACCACACATACACCACAAAAACCCCACACACATACACATATACACACCACACACACCACATACACACACGTATACACACATATATACACACATACACCATGCATACATACACACCACACATACATACAGACACACCACACACACGTACACACAACACACAACACAGACACGTACACACACTACAGACATGTATGCACACATACACACACACCACACATACATACACACAGACACATATACACTACACACACCATTACATACACACGTACACATACACCACA	AAGCTGTCCCATCAAGGAAGACAGCTTCTTGCAGCGATACAGCTCAGACCCCACAGGCGCCTTGACTGAGGACAGCATAGACGACACCTTCCTCCCAGTGCCTGGTGAGTGGCTTGTCTGGAAACAGTCCTGCTCCTCAACCTCCTCGACCCACTCAGCAGCAGCCAGTCTCCAGTGTCCAAGCCAGGTGCTCCCTCCAGCATCTCCAGAGGGGGAAACAGTGGCAGATTTGCAGACACAGTGAAGGGCGTAAGGAGCAGATAAACACATGACCGAGCCTGCACAAGCTCTTTGTTGTGTCTGGTTGTTTGCTGTACCTCTGTTGTAAGAATGAATCTGCAAAATTTCTAGCTTATGAAGCAAATCACGGACATACACATCTGTGTGTGTGAGTGTTCATGATGTGTGTACATCTGTGTATGTGTGTGTGTGTATGTGTGTGTTTGTGACAGATTTGATCCCTGTTCTCTCTGCTGGCTCTATCTTGACCTGTGAAACGTATATTTAACTAATTAAATATTAGTTAATATTAATAAATTTTAAGCTTTATCCAGATACTCATAACCTGCTAACACACACACATATACACACACATACACATACACACATATACACACACCACACACATACACAGACACCACACACATACCATACACAGACACATACACATGCACACACATATACACACACACCTCAAATACATACACACCACACACACATACATGTATACACACATACACACACCACACATACACCACAAAAACCCCACACACATACACATATACACACCACACACACCACATACACACACGTATACACACATATATACACACATACACCATGCATACATACACACCACACATACATACAGACACACCACACACACGTACACACAACACACAACACAGACACGTACACACACTACAGACATGTATGCACACATACACACACACCACACATACATACACACAGACACATATACACTACACACACCATTACATACACACGTACACATACACCACA	-			P-0063437-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			6385	2569	593	0	ENST00000275493.2:c.3168_3271+919del		p.X1056_splice	ENST00000275493	NM_005228.3	1056																																																																																
PTEN	5728	MSKCC	GRCh37	10	89653867	89653867	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0063444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	51	213	0	ENST00000371953.3:c.164+1G>A		p.X55_splice	ENST00000371953	NM_000314.4	55																																																																																
TP53	7157	MSKCC	GRCh37	17	7578207	7578207	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	341	627	0	ENST00000269305.4:c.642del	p.His214GlnfsTer33	p.H214Qfs*33	ENST00000269305	NM_001126112.2	214	caT/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0063444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	182	257	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295817	212295817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	161	384	0	ENST00000342788.4:c.2496G>A	p.Met832Ile	p.M832I	ENST00000342788	NM_005235.2	832	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0063462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	56	429	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
PMS1	5378	MSKCC	GRCh37	2	190656538	190656538	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0063462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	49	167	0	ENST00000441310.2:c.3G>A	p.Met1?	p.M1?	ENST00000441310	NM_000534.4	1	atG/atA																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792245	33792245	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			P-0063462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	18	245	0	ENST00000498907.2:c.1076G>C	p.Ter359SerextTer36	p.*359Sext*36	ENST00000498907	NM_004364.3	359	tGa/tCa																																																																															
ATRX	546	MSKCC	GRCh37	X	76763871	76763871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	35	179	0	ENST00000373344.5:c.7437G>A	p.Met2479Ile	p.M2479I	ENST00000373344	NM_000489.3	2479	atG/atA																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120471634	120471634	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs782319914		P-0063462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	50	346	0	ENST00000256646.2:c.3857A>G	p.Asn1286Ser	p.N1286S	ENST00000256646	NM_024408.3	1286	aAt/aGt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098882	178098882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	52	228	0	ENST00000397062.3:c.163G>A	p.Glu55Lys	p.E55K	ENST00000397062	NM_006164.4	55	Gaa/Aaa																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14629057	14629057	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	26	341	0	ENST00000254322.2:c.105G>C	p.Lys35Asn	p.K35N	ENST00000254322	NM_006145.1	35	aaG/aaC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431792	49431808	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAGCACAGATGCCAG	GGGAGCACAGATGCCAG	-			P-0063462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	62	447	0	ENST00000301067.7:c.9331_9347del	p.Leu3111Ter	p.L3111*	ENST00000301067	NM_003482.3	3111	CTGGCATCTGTGCTCCCt/t																																																																															
NF1	4763	MSKCC	GRCh37	17	29657369	29657369	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	41	224	0	ENST00000358273.4:c.5665G>T	p.Glu1889Ter	p.E1889*	ENST00000358273	NM_001042492.2	1889	Gag/Tag																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58711330	58711330	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	28	184	0	ENST00000305921.3:c.818G>C	p.Arg273Thr	p.R273T	ENST00000305921	NM_003620.3	273	aGa/aCa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098975	178099189	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAGTATGTCAATCAAATCCATGTCCTATGTTTAAGACAAAAAAAGGAAGGAGAGAGCTCATGTTTTTTAAATGACAGATACCACATAAATTAATTCACATTATGCCACTGTTGATGGTGGGAAGTGGGGAGATTACAAATACAATCTAAATGAGAACACAGATCCAATGTTCTAGAAGAGCACAGTTAATTCCATTCAATGAATCTATTCATTA	AAAGTATGTCAATCAAATCCATGTCCTATGTTTAAGACAAAAAAAGGAAGGAGAGAGCTCATGTTTTTTAAATGACAGATACCACATAAATTAATTCACATTATGCCACTGTTGATGGTGGGAAGTGGGGAGATTACAAATACAATCTAAATGAGAACACAGATCCAATGTTCTAGAAGAGCACAGTTAATTCCATTCAATGAATCTATTCATTA	-			P-0063462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	28	183	0	ENST00000397062.3:c.46-190_70del		p.X16_splice	ENST00000397062	NM_006164.4	16																																																																																
RASA1	5921	MSKCC	GRCh37	5	86676352	86676357	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	TACAGA	TACAGA	-			P-0063462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	37	167	0	ENST00000274376.6:c.2630_2635del	p.Leu877_Lys879delinsTer	p.L877_K879delins*	ENST00000274376	NM_002890.2	877	tTACAGAaa/taa																																																																															
GATA1	2623	MSKCC	GRCh37	X	48651663	48651663	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063462-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	37	192	0	ENST00000376670.3:c.829C>A	p.Pro277Thr	p.P277T	ENST00000376670	NM_002049.3	277	Ccc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0063465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	233	514	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
RAD52	5893	MSKCC	GRCh37	12	1036350	1036350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	93	419	1	ENST00000358495.3:c.428G>A	p.Arg143Lys	p.R143K	ENST00000358495	NM_134424.2	143	aGg/aAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0063465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	163	282	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736234	243736234	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0063465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	116	356	0	ENST00000263826.5:c.813T>A	p.Asp271Glu	p.D271E	ENST00000263826	NM_005465.4	271	gaT/gaA																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610164	10610164	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	119	513	0	ENST00000171111.5:c.546C>G	p.Ser182Arg	p.S182R	ENST00000171111	NM_203500.1	182	agC/agG																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53231088	53231088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	118	259	0	ENST00000375401.3:c.1814T>C	p.Phe605Ser	p.F605S	ENST00000375401	NM_004187.3	605	tTc/tCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0063466-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	27	389	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
JUN	3725	MSKCC	GRCh37	1	59247810	59247810	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0063480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	381	692	2	ENST00000371222.2:c.933del	p.Val312SerfsTer2	p.V312Sfs*2	ENST00000371222	NM_002228.3	311	aaA/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0063480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	177	304	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63553989	63553990	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0063480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	324	666	1	ENST00000307078.5:c.748_749dup	p.Leu250PhefsTer7	p.L250Ffs*7	ENST00000307078	NM_004655.3	250	ttg/ttTTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916925	178916927	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0063480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	422	283	4	ENST00000263967.3:c.314_316del	p.Val105del	p.V105del	ENST00000263967	NM_006218.2	104	ccAGTa/cca																																																																															
RASA1	5921	MSKCC	GRCh37	5	86627176	86627177	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0063480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	255	492	1	ENST00000274376.6:c.555dup	p.Leu186ThrfsTer2	p.L186Tfs*2	ENST00000274376	NM_002890.2	184	gga/ggAa																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0063480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	327	664	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578491	7578491	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			897	67	762	0	ENST00000269305.4:c.439del	p.Val147LeufsTer23	p.V147Lfs*23	ENST00000269305	NM_001126112.2	147	Gtt/tt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971066	21971100	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGG	GCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGG	-			P-0063528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	23	0	0	ENST00000304494.5:c.258_292del	p.Arg87ProfsTer21	p.R87Pfs*21	ENST00000304494	NM_000077.4	86	gcCCGGGAGGGCTTCCTGGACACGCTGGTGGTGCTGCac/gcac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0063528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	115	346	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43784210	43784210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	18	0	0	ENST00000382044.4:c.276C>A	p.Asn92Lys	p.N92K	ENST00000382044	NM_001141980.1	92	aaC/aaA																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778422	3778424	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0063528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1025	32	0	0	ENST00000262367.5:c.6624_6626del	p.Gln2216del	p.Q2216del	ENST00000262367	NM_004380.2	2208	caACAg/cag																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264425	30264426	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCT			P-0063528-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1045	22	0	0	ENST00000322652.5:c.175_177dup	p.Ser59dup	p.S59dup	ENST00000322652	NM_015355.2	59	gcc/gCCTcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0063533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	67	332	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579472	7579473	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0063533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	129	867	0	ENST00000269305.4:c.214_215delinsG	p.Pro72AlafsTer51	p.P72Afs*51	ENST00000269305	NM_001126112.2	72	CCc/Gc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0063533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	61	620	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971106	21971123	+	inframe_deletion	In_Frame_Del	DEL	GTCGTGCACGGGTCGGGT	GTCGTGCACGGGTCGGGT	-			P-0063533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	30	666	0	ENST00000304494.5:c.235_252del	p.Thr79_Asp84del	p.T79_D84del	ENST00000304494	NM_000077.4	79	ACCCGACCCGTGCACGAC/-																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0063541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			503	266	510	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576857	7576857	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0063541-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			516	115	684	0	ENST00000269305.4:c.989T>G	p.Leu330Arg	p.L330R	ENST00000269305	NM_001126112.2	330	cTt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0063577-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	24	324	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16248742	16248742	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0063578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	92	371	0	ENST00000375759.3:c.1750-2A>G		p.X584_splice	ENST00000375759	NM_015001.2	584																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120491681	120491681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	67	568	0	ENST00000256646.2:c.2548G>A	p.Glu850Lys	p.E850K	ENST00000256646	NM_024408.3	850	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0063578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	159	678	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47607000	47607000	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0063578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	93	515	0	ENST00000263735.4:c.750T>G	p.Tyr250Ter	p.Y250*	ENST00000263735	NM_002354.2	250	taT/taG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0063578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	46	314	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106670	27106671	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0063584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	170	502	0	ENST00000324856.7:c.6284dup	p.Ser2096PhefsTer3	p.S2096Ffs*3	ENST00000324856	NM_006015.4	2094	tgc/tgCc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851554	63851554	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	130	420	0	ENST00000279873.7:c.2332C>G	p.Leu778Val	p.L778V	ENST00000279873	NM_032199.2	778	Ctg/Gtg																																																																															
ATM	472	MSKCC	GRCh37	11	108186565	108186566	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0063584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	196	295	0	ENST00000278616.4:c.6022_6023del	p.Ile2008LeufsTer9	p.I2008Lfs*9	ENST00000278616	NM_000051.3	2008	ATc/c																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382179	152382179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	112	322	0	ENST00000206249.3:c.1289C>T	p.Ala430Val	p.A430V	ENST00000206249	NM_000125.3	430	gCt/gTt																																																																															
MGA	23269	MSKCC	GRCh37	15	42042403	42042403	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0063585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	92	521	0	ENST00000219905.7:c.6598C>T	p.Gln2200Ter	p.Q2200*	ENST00000219905	NM_001164273.1	2200	Cag/Tag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86679595	86679595	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0063588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	45	223	0	ENST00000274376.6:c.2756C>G	p.Ser919Ter	p.S919*	ENST00000274376	NM_002890.2	919	tCa/tGa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711903	89711903	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs864622341		P-0063588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	78	299	0	ENST00000371953.3:c.521A>G	p.Tyr174Cys	p.Y174C	ENST00000371953	NM_000314.4	174	tAt/tGt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348161	89348161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			839	164	454	0	ENST00000301030.4:c.4789C>T	p.Arg1597Cys	p.R1597C	ENST00000301030	NM_001256183.1	1597	Cgc/Tgc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11206841	11206841	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	143	373	0	ENST00000361445.4:c.4578G>T	p.Trp1526Cys	p.W1526C	ENST00000361445	NM_004958.3	1526	tgG/tgT																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230486751	230486751	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0063588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	131	421	0	ENST00000525115.1:c.640T>A	p.Phe214Ile	p.F214I	ENST00000525115		214	Ttc/Atc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577508	64577508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	155	450	0	ENST00000337652.1:c.74C>T	p.Ala25Val	p.A25V	ENST00000337652	NM_130803.2	25	gCc/gTc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118698	115118698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			799	167	445	0	ENST00000257566.3:c.643G>T	p.Asp215Tyr	p.D215Y	ENST00000257566	NM_016569.3	215	Gac/Tac																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515276	103515276	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			791	117	406	0	ENST00000355739.4:c.1777C>A	p.Pro593Thr	p.P593T	ENST00000355739	NM_000123.3	593	Cct/Act																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690616	33690616	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			887	176	423	0	ENST00000308377.4:c.211G>C	p.Val71Leu	p.V71L	ENST00000308377	NM_152270.3	71	Gtg/Ctg																																																																															
ATR	545	MSKCC	GRCh37	3	142185372	142185372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	67	236	0	ENST00000350721.4:c.6691G>T	p.Asp2231Tyr	p.D2231Y	ENST00000350721	NM_001184.3	2231	Gat/Tat																																																																															
ATR	545	MSKCC	GRCh37	3	142272750	142272750	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	27	273	0	ENST00000350721.4:c.2449G>C	p.Asp817His	p.D817H	ENST00000350721	NM_001184.3	817	Gac/Cac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356203	66356203	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1072	157	443	0	ENST00000273854.3:c.1294C>G	p.Leu432Val	p.L432V	ENST00000273854	NM_004439.5	432	Ctc/Gtc																																																																															
CDK6	1021	MSKCC	GRCh37	7	92244413	92244506	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	GGTGTTCTCCGCAGGATCAGCTTAAGGCGGCTGCTGAGGCCTCAGGCTGTATTCAGCTCCGAGGTGTTCTGGCTGGGCGGCAGGTGGGAATCCA	GGTGTTCTCCGCAGGATCAGCTTAAGGCGGCTGCTGAGGCCTCAGGCTGTATTCAGCTCCGAGGTGTTCTGGCTGGGCGGCAGGTGGGAATCCA	-			P-0063588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	33	276	0	ENST00000265734.4:c.929_*41del		p.*310*	ENST00000265734	NM_001259.6	310																																																																																
TP53	7157	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782620		P-0063589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	81	542	0	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112128142	112128142	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0063589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	48	214	0	ENST00000257430.4:c.646-1G>A		p.X216_splice	ENST00000257430	NM_000038.5	216																																																																																
APC	324	MSKCC	GRCh37	5	112173560	112173561	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0063589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	71	396	0	ENST00000257430.4:c.2274dup	p.Ala759SerfsTer16	p.A759Sfs*16	ENST00000257430	NM_000038.5	757	caa/cAaa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375080	118375080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	31	503	0	ENST00000534358.1:c.8473G>A	p.Asp2825Asn	p.D2825N	ENST00000534358	NM_005933.3	2825	Gac/Aac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141453	11141453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	58	437	0	ENST00000344626.4:c.3430G>A	p.Glu1144Lys	p.E1144K	ENST00000344626	NM_003072.3	1144	Gag/Aag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931588		P-0063590-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	79	454	0	ENST00000349496.5:c.94G>A	p.Asp32Asn	p.D32N	ENST00000349496	NM_001904.3	32	Gac/Aac																																																																															
POLE	5426	MSKCC	GRCh37	12	133219878	133219878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063590-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	205	540	0	ENST00000320574.5:c.4483G>A	p.Ala1495Thr	p.A1495T	ENST00000320574	NM_006231.2	1495	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578402	7578403	+	missense_variant	Missense_Mutation	DNP	GC	GC	AG			P-0063590-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			31	206	608	2	ENST00000269305.4:c.527_528delinsCT	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	tGC/tCT																																																																															
SOS1	6654	MSKCC	GRCh37	2	39240631	39240631	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063590-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	82	285	0	ENST00000402219.2:c.2137C>G	p.Arg713Gly	p.R713G	ENST00000402219	NM_005633.3	713	Cga/Gga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52702528	52702528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063590-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	124	250	0	ENST00000394830.3:c.370A>C	p.Lys124Gln	p.K124Q	ENST00000394830	NM_018313.4	124	Aag/Cag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929164	44929165	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0063590-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			26	171	203	0	ENST00000377967.4:c.2266dup	p.Ala756GlyfsTer8	p.A756Gfs*8	ENST00000377967	NM_021140.2	755	acg/acGg																																																																															
ATRX	546	MSKCC	GRCh37	X	76875892	76875892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063590-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	79	156	0	ENST00000373344.5:c.5243G>T	p.Gly1748Val	p.G1748V	ENST00000373344	NM_000489.3	1748	gGa/gTa																																																																															
ATRX	546	MSKCC	GRCh37	X	76875898	76875898	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063590-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	81	161	0	ENST00000373344.5:c.5237T>C	p.Leu1746Ser	p.L1746S	ENST00000373344	NM_000489.3	1746	tTa/tCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0063607-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	87	579	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241678	55241678	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs397517085		P-0063607-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	99	591	0	ENST00000275493.2:c.2126A>C	p.Glu709Ala	p.E709A	ENST00000275493	NM_005228.3	709	gAa/gCa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56400754	56400754	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063607-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	39	376	0	ENST00000348428.3:c.1348C>G	p.Gln450Glu	p.Q450E	ENST00000348428	NM_006785.3	450	Caa/Gaa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341735	8341735	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063607-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	50	481	0	ENST00000356435.5:c.4905A>G	p.Ile1635Met	p.I1635M	ENST00000356435		1635	atA/atG																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0063626-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	137	442	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0063626-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	121	502	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782177		P-0063626-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	244	672	0	ENST00000269305.4:c.644G>A	p.Ser215Asn	p.S215N	ENST00000269305	NM_001126112.2	215	aGt/aAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42028432	42028432	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063626-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	111	509	0	ENST00000219905.7:c.3970A>G	p.Met1324Val	p.M1324V	ENST00000219905	NM_001164273.1	1324	Atg/Gtg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94212011	94212011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063626-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	106	380	0	ENST00000323929.3:c.434G>A	p.Ser145Asn	p.S145N	ENST00000323929	NM_005591.3	145	aGt/aAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436034	56436035	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0063626-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	257	820	0	ENST00000407977.2:c.1101_1102dup	p.Arg368LeufsTer52	p.R368Lfs*52	ENST00000407977		368	cgg/cTCgg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0063628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	30	531	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0063628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	19	306	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041690	47041991	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGAAGGAGAAGCACAAGACCAAGACAGCTCAACAGGTGAACACCAGGGTCCAGCAGTCACTGGCTGGCTGTGTGGTGTCTTCCAGCAACGGCACTCTGTCAGCTCTTGCCCTCTCCTGCCAAGGGAGATGGCGGGCAGGTGTGGATGTGGGCAGTGACTGCTTAGCAGACCATGCTCTTGCCCCAGCTCTGCTCTTTGCTGAATGGCCTTGAGCCAGAGCAGTCTCCTCAGTGTGTGGCAGGGTTGCCCAACTCCAGGAGGTGGCTTGTGCCATCCGAGTGAGCCCTGTCAGGTGTCTTCT	AAGAAGGAGAAGCACAAGACCAAGACAGCTCAACAGGTGAACACCAGGGTCCAGCAGTCACTGGCTGGCTGTGTGGTGTCTTCCAGCAACGGCACTCTGTCAGCTCTTGCCCTCTCCTGCCAAGGGAGATGGCGGGCAGGTGTGGATGTGGGCAGTGACTGCTTAGCAGACCATGCTCTTGCCCCAGCTCTGCTCTTTGCTGAATGGCCTTGAGCCAGAGCAGTCTCCTCAGTGTGTGGCAGGGTTGCCCAACTCCAGGAGGTGGCTTGTGCCATCCGAGTGAGCCCTGTCAGGTGTCTTCT	-			P-0063628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	28	315	0	ENST00000329236.7:c.1681_1716+266del		p.X561_splice	ENST00000329236	NM_001204466.1	561																																																																																
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0063629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	478	532	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509857	106509857	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	372	468	1	ENST00000359195.3:c.1851G>T	p.Trp617Cys	p.W617C	ENST00000359195	NM_002649.2	617	tgG/tgT																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10244378	10244892	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	CTGAAGGGAAATAAAAGGAAAAGTCACTCTGGGGAACACGCCCGGTGTCACGCCACTTGACAGGCGAGTAACAGACATGGACCATCAGGAAACATTAACGTACTGATGTTAACAGCTGACCCAATAAGTGGCAGAGTGCTAAGGGAACGTTCACGGAGACTGAACACTCCTCAAACGGTCCCCAGAGGGTTCTAGACCCAGAGGCTCAAGTGAGCAGCTGAGGCAGGTGCCTGCTGAGCCAAATTCACCGAGCAGGAGTGAGGGAAACGGCCCCAGGGCCAGCCCAGCAGCCAACCTGACCAAAGGCCTGCTGTGTGCAGCACGCCTGCTCTAAGCACTTGACACGTGCAACTCACTCAATCCTCACAGCAGCCCCTTGAGAAAGATGGGGCCACGAACGTGGGTAGGTGACCCGCCTGAGTCCCAGAGCCCAAAACGGTGGCCAGCAACTGCCCCCACATGTACCCCCAGAGGGCAGTCAGGCCCCAGAGGAAGCCTGGCCCACCCCACCATAC	CTGAAGGGAAATAAAAGGAAAAGTCACTCTGGGGAACACGCCCGGTGTCACGCCACTTGACAGGCGAGTAACAGACATGGACCATCAGGAAACATTAACGTACTGATGTTAACAGCTGACCCAATAAGTGGCAGAGTGCTAAGGGAACGTTCACGGAGACTGAACACTCCTCAAACGGTCCCCAGAGGGTTCTAGACCCAGAGGCTCAAGTGAGCAGCTGAGGCAGGTGCCTGCTGAGCCAAATTCACCGAGCAGGAGTGAGGGAAACGGCCCCAGGGCCAGCCCAGCAGCCAACCTGACCAAAGGCCTGCTGTGTGCAGCACGCCTGCTCTAAGCACTTGACACGTGCAACTCACTCAATCCTCACAGCAGCCCCTTGAGAAAGATGGGGCCACGAACGTGGGTAGGTGACCCGCCTGAGTCCCAGAGCCCAAAACGGTGGCCAGCAACTGCCCCCACATGTACCCCCAGAGGGCAGTCAGGCCCCAGAGGAAGCCTGGCCCACCCCACCATAC	-			P-0063629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			930	252	370	0	ENST00000340748.4:c.4816+1_4817-1del		p.X1606_splice	ENST00000340748		1606																																																																																
CDK4	1019	MSKCC	GRCh37	12	58144722	58144722	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1190	141	757	0	ENST00000257904.6:c.506T>C	p.Met169Thr	p.M169T	ENST00000257904	NM_000075.3	169	aTg/aCg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449745	149449745	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0063629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	369	653	0	ENST00000286301.3:c.1319G>T	p.Arg440Met	p.R440M	ENST00000286301	NM_005211.3	440	aGg/aTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2983965	2983965	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			758	213	521	0	ENST00000396946.4:c.565A>C	p.Ser189Arg	p.S189R	ENST00000396946	NM_032415.4	189	Agc/Cgc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971125	21971125	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063629-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	449	643	0	ENST00000304494.5:c.233T>C	p.Leu78Pro	p.L78P	ENST00000304494	NM_000077.4	78	cTc/cCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0063645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	122	648	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031880	10031880	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765104792		P-0063645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	152	565	0	ENST00000330684.3:c.943G>A	p.Glu315Lys	p.E315K	ENST00000330684	NM_001134407.1	315	Gag/Aag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112352	115112352	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1247378046		P-0063645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	189	671	0	ENST00000257566.3:c.1388C>T	p.Ala463Val	p.A463V	ENST00000257566	NM_016569.3	463	gCg/gTg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936801	150936801	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0063645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	361	633	0	ENST00000271640.5:c.3837T>A	p.Cys1279Ter	p.C1279*	ENST00000271640	NM_001145415.1	1279	tgT/tgA																																																																															
RXRA	6256	MSKCC	GRCh37	9	137328385	137328391	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCAAG	CTTCAAG	-			P-0063645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	164	597	0	ENST00000481739.1:c.1316_1322del	p.Phe439SerfsTer21	p.F439Sfs*21	ENST00000481739	NM_002957.4	438	ttCTTCAAG/tt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0063647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	31	466	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0063647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	27	634	0				ENST00000310581	NM_198253.2																																																																																	
ATXN7	6314	MSKCC	GRCh37	3	63985107	63985142	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCCCCTCTTTTTTGAAAGCCAAAGGCACGTCCCTG	ACCCCCTCTTTTTTGAAAGCCAAAGGCACGTCCCTG	-			P-0063647-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	33	492	0	ENST00000295900.6:c.2662-17_*1del		p.X888_splice	ENST00000295900	NM_000333.3	888																																																																																
PRDM14	63978	MSKCC	GRCh37	8	70970924	70970924	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	36	591	0	ENST00000276594.2:c.1337G>C	p.Arg446Pro	p.R446P	ENST00000276594	NM_024504.3	446	cGg/cCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0063648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	32	347	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TET1	80312	MSKCC	GRCh37	10	70332988	70332988	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	39	680	0	ENST00000373644.4:c.893C>A	p.Pro298His	p.P298H	ENST00000373644	NM_030625.2	298	cCc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444022	49444022	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	49	796	0	ENST00000301067.7:c.3349G>C	p.Gly1117Arg	p.G1117R	ENST00000301067	NM_003482.3	1117	Ggc/Cgc																																																																															
MAX	4149	MSKCC	GRCh37	14	65544747	65544748	+	frameshift_variant	Frame_Shift_Ins	INS	CG	CG	AGA			P-0063648-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	44	564	0	ENST00000358664.4:c.178_179delinsTCT	p.Arg60SerfsTer27	p.R60Sfs*27	ENST00000358664	NM_002382.4	60	CGg/TCTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0063649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	53	462	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0063649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	14	278	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161888	47161891	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-	rs771527963		P-0063649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	43	586	0	ENST00000409792.3:c.4235_4238del	p.Glu1412ValfsTer19	p.E1412Vfs*19	ENST00000409792	NM_014159.6	1412	gAGAGt/gt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165169	47165169	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	24	481	0	ENST00000409792.3:c.957del	p.Gly320ValfsTer20	p.G320Vfs*20	ENST00000409792	NM_014159.6	319	ctT/ct																																																																															
APC	324	MSKCC	GRCh37	5	112173354	112173354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063649-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	30	537	0	ENST00000257430.4:c.2063C>T	p.Ser688Leu	p.S688L	ENST00000257430	NM_000038.5	688	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519989		P-0063650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	203	552	0	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0063650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	289	620	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
ARAF	369	MSKCC	GRCh37	X	47424532	47424532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1321474185		P-0063650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	84	391	0	ENST00000377045.4:c.452G>A	p.Arg151His	p.R151H	ENST00000377045	NM_001654.4	151	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245453	153245453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	405	568	1	ENST00000281708.4:c.1738C>T	p.His580Tyr	p.H580Y	ENST00000281708	NM_033632.3	580	Cac/Tac																																																																															
HGF	3082	MSKCC	GRCh37	7	81336624	81336624	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771437724		P-0063650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	121	451	0	ENST00000222390.5:c.1598G>A	p.Arg533Gln	p.R533Q	ENST00000222390	NM_000601.4	533	cGa/cAa																																																																															
SMO	6608	MSKCC	GRCh37	7	128843333	128843333	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	86	754	0	ENST00000249373.3:c.440G>C	p.Cys147Ser	p.C147S	ENST00000249373	NM_005631.4	147	tGc/tCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0063663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	34	559	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0063663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	91	878	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259502	55259502	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	36	581	0	ENST00000275493.2:c.2560A>G	p.Thr854Ala	p.T854A	ENST00000275493	NM_005228.3	854	Aca/Gca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0051534-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			157	70	371	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CALR	811	MSKCC	GRCh37	19	13054544	13054544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051534-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			111	26	565	0	ENST00000316448.5:c.1071G>A	p.Met357Ile	p.M357I	ENST00000316448	NM_004343.3	357	atG/atA																																																																															
ETV6	2120	MSKCC	GRCh37	12	12037492	12037492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051534-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			154	25	446	0	ENST00000396373.4:c.1123G>A	p.Gly375Arg	p.G375R	ENST00000396373	NM_001987.4	375	Gga/Aga																																																																															
MET	4233	MSKCC	GRCh37	7	116411878	116411894	+	intron_variant	Intron	DEL	GCTCTTTCTTTCTCTCT	GCTCTTTCTTTCTCTCT	-			P-0051534-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			144	313	603	0	ENST00000397752.3:c.2888-24_2888-8del		p.*963*	ENST00000397752	NM_000245.2																																																																																	
TERT	7015	MSKCC	GRCh37	5	1271280	1271280	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200119385		P-0051534-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			259	28	334	0	ENST00000310581.5:c.2422G>A	p.Val808Ile	p.V808I	ENST00000310581	NM_198253.2	808	Gtc/Atc																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032195	26032195	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051534-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			148	91	641	0	ENST00000244661.2:c.94G>T	p.Ala32Ser	p.A32S	ENST00000244661	NM_003537.3	32	Gct/Tct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0055343-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			390	46	243	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579444	7579444	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0055343-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			741	121	768	0	ENST00000269305.4:c.243del	p.Pro82ArgfsTer41	p.P82Rfs*41	ENST00000269305	NM_001126112.2	81	acA/ac																																																																															
YES1	7525	MSKCC	GRCh37	18	724513	724513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055343-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			183	12	154	0	ENST00000314574.4:c.1543G>A	p.Glu515Lys	p.E515K	ENST00000314574	NM_005433.3	515	Gaa/Aaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178147	56178148	+	stop_gained	Nonsense_Mutation	DNP	TA	TA	CT			P-0055343-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			579	189	536	0	ENST00000399503.3:c.3120_3121delinsCT	p.Lys1041Ter	p.K1041*	ENST00000399503	NM_005921.1	1040	gaTAaa/gaCTaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860394	151860395	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0055343-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			777	158	582	0	ENST00000262189.6:c.10267dup	p.Arg3423LysfsTer18	p.R3423Kfs*18	ENST00000262189	NM_170606.2	3423	aga/aAga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0056888-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			534	158	413	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0056888-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			471	135	394	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ATM	472	MSKCC	GRCh37	11	108163374	108163374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056888-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			349	30	277	0	ENST00000278616.4:c.4465C>A	p.Arg1489Ser	p.R1489S	ENST00000278616	NM_000051.3	1489	Cgt/Agt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560374	95560374	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056888-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			458	53	325	0	ENST00000343455.3:c.5215C>G	p.Leu1739Val	p.L1739V	ENST00000343455	NM_177438.2	1739	Ctg/Gtg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942159	17942175	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCCAGGTCGCGGT	GGCGGCCAGGTCGCGGT	-			P-0056888-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			450	33	380	0	ENST00000458235.1:c.2840_2856del	p.His947ProfsTer15	p.H947Pfs*15	ENST00000458235	NM_000215.3	947	cACCGCGACCTGGCCGCC/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs764146326		P-0061817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			461	167	540	2	ENST00000269305.4:c.841G>T	p.Asp281Tyr	p.D281Y	ENST00000269305	NM_001126112.2	281	Gac/Tac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242486	+	inframe_deletion	In_Frame_Del	DEL	TTAAGAGAAGCAACATCT	TTAAGAGAAGCAACATCT	-	rs121913440		P-0061817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			446	236	415	0	ENST00000275493.2:c.2239_2256del	p.Leu747_Ser752del	p.L747_S752del	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAACATCT/-																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249007	55249007	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs147149347		P-0061817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			663	307	589	0	ENST00000275493.2:c.2305G>C	p.Val769Leu	p.V769L	ENST00000275493	NM_005228.3	769	Gtg/Ctg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664873	138664902	+	inframe_deletion	In_Frame_Del	DEL	GCCGCAGCTGCTGCAGCCGCTGCGGCTGCC	GCCGCAGCTGCTGCAGCCGCTGCGGCTGCC	-	rs764243782		P-0061817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			396	25	403	0	ENST00000330315.3:c.663_692del	p.Ala225_Ala234del	p.A225_A234del	ENST00000330315	NM_023067.3	221	gcGGCAGCCGCAGCGGCTGCAGCAGCTGCGGCt/gct																																																																															
AR	367	MSKCC	GRCh37	X	66764991	66764992	+	stop_gained,start_lost	Nonsense_Mutation	DNP	GG	GG	TT			P-0061817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			478	168	525	0	ENST00000374690.3:c.3_4delinsTT	p.MetGlu1_?2	p.ME1_?2	ENST00000374690	NM_000044.3	1	atGGaa/atTTaa																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33689779	33689779	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0061817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			561	109	505	0	ENST00000308377.4:c.1048A>C	p.Met350Leu	p.M350L	ENST00000308377	NM_152270.3	350	Atg/Ctg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509436	106509436	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200175951		P-0062983-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			456	246	540	0	ENST00000359195.3:c.1430G>A	p.Arg477His	p.R477H	ENST00000359195	NM_002649.2	477	cGt/cAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720857	89720857	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0062983-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			32	61	117	0	ENST00000371953.3:c.1008C>A	p.Tyr336Ter	p.Y336*	ENST00000371953	NM_000314.4	336	taC/taA																																																																															
CDH1	999	MSKCC	GRCh37	16	68849592	68849593	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0062983-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	292	502	0	ENST00000261769.5:c.1496_1497del	p.Phe499TrpfsTer37	p.F499Wfs*37	ENST00000261769	NM_004360.3	499	TTt/t																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458258	120458258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371357549		P-0062983-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			660	345	710	0	ENST00000256646.2:c.7087G>A	p.Gly2363Arg	p.G2363R	ENST00000256646	NM_024408.3	2363	Ggg/Agg																																																																															
NF1	4763	MSKCC	GRCh37	17	29670060	29670060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062983-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			241	151	282	0	ENST00000358273.4:c.7096C>A	p.Pro2366Thr	p.P2366T	ENST00000358273	NM_001042492.2	2366	Cct/Act																																																																															
FH	2271	MSKCC	GRCh37	1	241671911	241671911	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	44	279	0	ENST00000366560.3:c.730C>G	p.Leu244Val	p.L244V	ENST00000366560	NM_000143.3	244	Ctt/Gtt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041099	29041099	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0063217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	66	434	0	ENST00000282397.4:c.329T>A	p.Leu110Gln	p.L110Q	ENST00000282397	NM_002019.4	110	cTa/cAa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562618	95562618	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	104	543	0	ENST00000343455.3:c.4639G>T	p.Asp1547Tyr	p.D1547Y	ENST00000343455	NM_177438.2	1547	Gac/Tac																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31410931	31410931	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0063217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	69	510	0	ENST00000344624.3:c.3589C>T	p.Gln1197Ter	p.Q1197*	ENST00000344624		1197	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249006	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGTGGACAACCCCCA			P-0063217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	79	465	0	ENST00000275493.2:c.2308_2322dup	p.Asp770_Val774dup	p.D770_V774dup	ENST00000275493	NM_005228.3	770	agc/agCGTGGACAACCCCCAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249073	55249073	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	122	539	0	ENST00000275493.2:c.2371C>G	p.Gln791Glu	p.Q791E	ENST00000275493	NM_005228.3	791	Cag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0063222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	177	771	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936207	150936207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	162	713	0	ENST00000271640.5:c.3659G>A	p.Arg1220His	p.R1220H	ENST00000271640	NM_001145415.1	1220	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717610	89717610	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0063222-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	38	361	1	ENST00000371953.3:c.635A>C	p.Asn212Thr	p.N212T	ENST00000371953	NM_000314.4	212	aAt/aCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0063230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	28	811	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879900	37879900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	34	873	0	ENST00000269571.5:c.2195G>C	p.Gly732Ala	p.G732A	ENST00000269571		732	gGc/gCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0063230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	13	296	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604769	48604770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0063230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	22	584	0	ENST00000342988.3:c.1594dup	p.Ala532GlyfsTer45	p.A532Gfs*45	ENST00000342988	NM_005359.5	531	cgg/cGgg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0063231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	53	704	9	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
POT1	25913	MSKCC	GRCh37	7	124532352	124532352	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063231-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	18	342	0	ENST00000357628.3:c.92T>C	p.Phe31Ser	p.F31S	ENST00000357628	NM_015450.2	31	tTc/tCc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0063232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	61	306	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs267605076		P-0063232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	63	662	0	ENST00000269305.4:c.672G>T	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048632	180048632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	37	670	0	ENST00000261937.6:c.1930G>A	p.Ala644Thr	p.A644T	ENST00000261937	NM_182925.4	644	Gcg/Acg																																																																															
TP63	8626	MSKCC	GRCh37	3	189526071	189526071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	73	592	1	ENST00000264731.3:c.335C>T	p.Thr112Met	p.T112M	ENST00000264731	NM_003722.4	112	aCg/aTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332108	70332108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140156594		P-0063232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	26	412	0	ENST00000373644.4:c.13C>T	p.Arg5Cys	p.R5C	ENST00000373644	NM_030625.2	5	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0063232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	28	285	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29586086	29586086	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	20	245	0	ENST00000358273.4:c.4369A>G	p.Lys1457Glu	p.K1457E	ENST00000358273	NM_001042492.2	1457	Aaa/Gaa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011106	12011106	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0063232-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	44	297	0	ENST00000353533.5:c.515del		p.X172_splice	ENST00000353533	NM_003010.3	172																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0063236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	98	218	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TSHR	7253	MSKCC	GRCh37	14	81606150	81606150	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373712078		P-0063236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	212	531	0	ENST00000298171.2:c.820C>T	p.Arg274Trp	p.R274W	ENST00000298171	NM_000369.2	274	Cgg/Tgg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806119	1806119	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931614		P-0063236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			878	18	626	0	ENST00000260795.2:c.1138G>A	p.Gly380Arg	p.G380R	ENST00000260795		380	Ggg/Agg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011144	12011144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	74	293	0	ENST00000353533.5:c.551C>T	p.Ser184Leu	p.S184L	ENST00000353533	NM_003010.3	184	tCg/tTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938932	178938932	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	87	150	0	ENST00000263967.3:c.2174A>G	p.Asp725Gly	p.D725G	ENST00000263967	NM_006218.2	725	gAt/gGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971154	21971154	+	synonymous_variant	Silent	SNP	C	C	T			P-0063236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			728	112	719	0	ENST00000304494.5:c.204G>A	p.Ala68=	p.A68=	ENST00000304494	NM_000077.4	68	gcG/gcA																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803416	1803416	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368831528		P-0063236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			800	304	833	0	ENST00000260795.2:c.685G>A	p.Val229Ile	p.V229I	ENST00000260795		229	Gtc/Atc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110073	115110073	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	233	498	0	ENST00000257566.3:c.1805del	p.Pro602LeufsTer30	p.P602Lfs*30	ENST00000257566	NM_016569.3	602	cCt/ct																																																																															
KIT	3815	MSKCC	GRCh37	4	55561756	55561756	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376469897		P-0063236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	156	503	0	ENST00000288135.5:c.146G>A	p.Arg49His	p.R49H	ENST00000288135	NM_000222.2	49	cGc/cAc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73342975	73342975	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757306363		P-0063236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	111	308	0	ENST00000377767.4:c.1831C>T	p.Arg611Cys	p.R611C	ENST00000377767	NM_014953.3	611	Cgt/Tgt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885287	111885287	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs953911126		P-0063236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	192	626	0	ENST00000341259.2:c.1175G>A	p.Arg392Gln	p.R392Q	ENST00000341259	NM_005475.2	392	cGg/cAg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106074	8106075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0063236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			776	99	608	0	ENST00000346208.3:c.898dup	p.Leu300ProfsTer3	p.L300Pfs*3	ENST00000346208		298	-/C																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99181187	99181187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	207	577	0	ENST00000074304.5:c.2128G>A	p.Gly710Arg	p.G710R	ENST00000074304	NM_001134224.1	710	Ggg/Agg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217617	7217617	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	209	579	0	ENST00000380728.2:c.310del	p.Glu104AsnfsTer5	p.E104Nfs*5	ENST00000380728		104	Gaa/aa																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40441520	40441520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			844	71	566	0	ENST00000345506.4:c.91C>T	p.Arg31Trp	p.R31W	ENST00000345506	NM_003152.3	31	Cgg/Tgg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554671	63554671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			937	142	724	0	ENST00000307078.5:c.68G>A	p.Arg23Gln	p.R23Q	ENST00000307078	NM_004655.3	23	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178937485	178937485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063236-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	103	202	0	ENST00000263967.3:c.1873G>A	p.Asp625Asn	p.D625N	ENST00000263967	NM_006218.2	625	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0063323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	126	552	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0063323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	113	317	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-	rs397517086		P-0063325-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			33	9	525	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0063330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	48	206	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0063330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	10	181	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs869025608		P-0063330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	115	426	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111854391		P-0063330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	131	408	0	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579408	7579460	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTG	CAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTG	-			P-0063330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	207	635	0	ENST00000269305.4:c.227_279del	p.Ala76ValfsTer55	p.A76Vfs*55	ENST00000269305	NM_001126112.2	76	gCACCAGCAGCTCCTACACCGGCGGCCCCTGCACCAGCCCCCTCCTGGCCCCTG/g																																																																															
KLF4	9314	MSKCC	GRCh37	9	110251306	110251306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	116	441	0	ENST00000374672.4:c.31G>T	p.Ala11Ser	p.A11S	ENST00000374672	NM_004235.4	11	Gct/Tct																																																																															
APC	324	MSKCC	GRCh37	5	112175789	112175789	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0063330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	125	503	0	ENST00000257430.4:c.4501del	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1500	Ttt/tt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0063330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	133	389	0	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729115	66729115	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs727504819		P-0063330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			796	116	521	0	ENST00000307102.5:c.323G>A	p.Arg108Gln	p.R108Q	ENST00000307102	NM_002755.3	108	cGg/cAg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2185889	2185889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	161	398	0	ENST00000398665.3:c.161C>T	p.Ala54Val	p.A54V	ENST00000398665	NM_032482.2	54	gCt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112174149	112174150	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATTAGAAT			P-0063330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	69	417	0	ENST00000257430.4:c.2860_2867dup	p.Lys957Ter	p.K957*	ENST00000257430	NM_000038.5	953	aaa/aaATTAGAATa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519746	176519746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	137	563	0	ENST00000292408.4:c.1018G>A	p.Gly340Ser	p.G340S	ENST00000292408	NM_213647.1	340	Ggc/Agc																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158642	26158642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	13	133	0	ENST00000289316.2:c.245C>T	p.Ala82Val	p.A82V	ENST00000289316	NM_138720.2	82	gCg/gTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0063368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	279	519	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521481	8521481	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760428875		P-0063368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	72	592	0	ENST00000356435.5:c.757G>A	p.Val253Ile	p.V253I	ENST00000356435		253	Gtt/Att																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101908874	101908874	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	103	576	0	ENST00000374994.4:c.1238G>T	p.Arg413Leu	p.R413L	ENST00000374994	NM_004612.2	413	cGa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578209	7578209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	129	689	0	ENST00000269305.4:c.640C>T	p.His214Tyr	p.H214Y	ENST00000269305	NM_001126112.2	214	Cat/Tat																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138600	2138600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	71	599	0	ENST00000219476.3:c.5413G>A	p.Glu1805Lys	p.E1805K	ENST00000219476	NM_000548.3	1805	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578202	7578203	+	missense_variant	Missense_Mutation	DNP	AC	AC	CT			P-0063368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	126	705	0	ENST00000269305.4:c.646_647delinsAG	p.Val216Arg	p.V216R	ENST00000269305	NM_001126112.2	216	GTg/AGg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62320910	62320910	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A			P-0063374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	30	823	0	ENST00000482936.1:c.1934G>A	p.Gly645Asp	p.G645D	ENST00000482936		645	gGc/gAc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681136	117681136	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	40	394	0	ENST00000368508.3:c.3484A>T	p.Asn1162Tyr	p.N1162Y	ENST00000368508	NM_002944.2	1162	Aac/Tac																																																																															
ATM	472	MSKCC	GRCh37	11	108098533	108098533	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs55861249		P-0063387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	94	190	0	ENST00000278616.4:c.103C>T	p.Arg35Ter	p.R35*	ENST00000278616	NM_000051.3	35	Cga/Tga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88726698	88726698	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375475747		P-0063387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	331	497	0	ENST00000360948.2:c.346C>T	p.Arg116Trp	p.R116W	ENST00000360948	NM_001012338.2	116	Cgg/Tgg																																																																															
LYN	4067	MSKCC	GRCh37	8	56864653	56864653	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759824481		P-0063387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	349	292	0	ENST00000519728.1:c.616G>A	p.Asp206Asn	p.D206N	ENST00000519728	NM_002350.3	206	Gac/Aac																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78428573	78428573	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	24	279	0	ENST00000370768.2:c.1226G>T	p.Arg409Ile	p.R409I	ENST00000370768	NM_003902.3	409	aGa/aTa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23634395	23634395	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	80	366	0	ENST00000261584.4:c.2891G>C	p.Gly964Ala	p.G964A	ENST00000261584	NM_024675.3	964	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579535	7579536	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CAATATC			P-0063387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	316	725	0	ENST00000269305.4:c.145_151dup	p.Glu51GlyfsTer3	p.E51Gfs*3	ENST00000269305	NM_001126112.2	51	gaa/gGATATTGaa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252976	36252977	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0063387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	124	506	0	ENST00000300305.3:c.385dup	p.Leu129ProfsTer9	p.L129Pfs*9	ENST00000300305		129	ctg/cCtg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189418	56189420	+	inframe_deletion	In_Frame_Del	DEL	GTG	GTG	-			P-0063387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	105	557	0	ENST00000399503.3:c.4451_4453del	p.Val1484del	p.V1484del	ENST00000399503	NM_005921.1	1484	GTG/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs587781642		P-0063391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	65	581	0	ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0063391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	61	572	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0063403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			842	1906	796	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0063403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			775	1681	642	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
APC	324	MSKCC	GRCh37	5	112175606	112175606	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	403	626	0	ENST00000257430.4:c.4316del	p.Pro1439LeufsTer34	p.P1439Lfs*34	ENST00000257430	NM_000038.5	1439	Cct/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0063403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	300	580	0	ENST00000269305.4:c.376-1G>C		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56488249	56488249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	187	592	0	ENST00000267101.3:c.1768C>T	p.Pro590Ser	p.P590S	ENST00000267101	NM_001982.3	590	Ccc/Tcc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467916	50467916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1372604802		P-0063403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	182	633	0	ENST00000331340.3:c.1151C>T	p.Ser384Leu	p.S384L	ENST00000331340	NM_006060.4	384	tCg/tTg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372146	55372146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	484	770	2	ENST00000297316.4:c.836C>T	p.Ala279Val	p.A279V	ENST00000297316	NM_022454.3	279	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0063403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	144	282	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
MGA	23269	MSKCC	GRCh37	15	42052603	42052603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	294	531	0	ENST00000219905.7:c.7274G>A	p.Arg2425His	p.R2425H	ENST00000219905	NM_001164273.1	2425	cGc/cAc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526574	31526574	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	159	454	0	ENST00000344624.3:c.466C>G	p.Pro156Ala	p.P156A	ENST00000344624		156	Ccc/Gcc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0063408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	142	434	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0063408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	170	522	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226066	53226066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	189	590	0	ENST00000375401.3:c.2783C>T	p.Ala928Val	p.A928V	ENST00000375401	NM_004187.3	928	gCg/gTg																																																																															
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	126	439	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0063408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			62	84	280	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7579314	7579322	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TGCAAGTCA	TGCAAGTCA	-			P-0063408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	214	467	0	ENST00000269305.4:c.365_373del	p.Val122_Thr125delinsAla	p.V122_T125delinsA	ENST00000269305	NM_001126112.2	122	gTGACTTGCAcg/gcg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117939	70117939	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	351	586	0	ENST00000245479.2:c.407G>C	p.Ser136Thr	p.S136T	ENST00000245479	NM_000346.3	136	aGc/aCc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629703	187629703	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	148	496	1	ENST00000441802.2:c.1279A>G	p.Lys427Glu	p.K427E	ENST00000441802	NM_005245.3	427	Aaa/Gaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104588	69104588	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143014630		P-0063408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	124	409	0	ENST00000288368.4:c.4432G>A	p.Ala1478Thr	p.A1478T	ENST00000288368	NM_024870.2	1478	Gct/Act																																																																															
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0062912-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	241	485	0	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880998	37880998	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs144434331		P-0062912-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	259	604	0	ENST00000269571.5:c.2327G>T	p.Gly776Val	p.G776V	ENST00000269571		776	gGt/gTt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061316	38061316	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0062912-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	234	586	0	ENST00000250448.2:c.673A>C	p.Asn225His	p.N225H	ENST00000250448	NM_004496.3	225	Aat/Cat																																																																															
CDH1	999	MSKCC	GRCh37	16	68846085	68846085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0062912-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	229	481	0	ENST00000261769.5:c.1056del	p.Glu353ArgfsTer3	p.E353Rfs*3	ENST00000261769	NM_004360.3	352	ggT/gg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534289	187534290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0062912-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	205	523	0	ENST00000441802.2:c.9435_9436dup	p.Arg3146LysfsTer12	p.R3146Kfs*12	ENST00000441802	NM_005245.3	3146	aga/aAAga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0063202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	21	248	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1620984	1620984	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772853413		P-0063202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	114	773	0	ENST00000344749.5:c.1076C>T	p.Ser359Phe	p.S359F	ENST00000344749	NM_001136139.2	359	tCc/tTc																																																																															
MAX	4149	MSKCC	GRCh37	14	65569055	65569055	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0063202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	107	454	0	ENST00000358664.4:c.3G>A	p.Met1?	p.M1?	ENST00000358664	NM_002382.4	1	atG/atA																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066630	94066630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	80	593	0	ENST00000369303.4:c.1129G>A	p.Gly377Ser	p.G377S	ENST00000369303	NM_004440.3	377	Ggc/Agc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798163	32798163	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	179	632	0	ENST00000374899.4:c.1516G>T	p.Gly506Trp	p.G506W	ENST00000374899	NM_018833.2	506	Ggg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0063202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	201	415	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108206624	108206624	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	149	500	0	ENST00000278616.4:c.8204G>T	p.Cys2735Phe	p.C2735F	ENST00000278616	NM_000051.3	2735	tGt/tTt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2202753	2202753	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	173	546	0	ENST00000398665.3:c.762G>T	p.Lys254Asn	p.K254N	ENST00000398665	NM_032482.2	254	aaG/aaT																																																																															
CIC	23152	MSKCC	GRCh37	19	42793420	42793420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	77	699	0	ENST00000575354.2:c.1222G>T	p.Gly408Cys	p.G408C	ENST00000575354	NM_015125.3	408	Ggt/Tgt																																																																															
ALK	238	MSKCC	GRCh37	2	29450460	29450460	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0063202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			841	124	755	0	ENST00000389048.3:c.2894T>A	p.Leu965Gln	p.L965Q	ENST00000389048	NM_004304.4	965	cTg/cAg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248576	212248576	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			783	66	683	0	ENST00000342788.4:c.3691G>C	p.Glu1231Gln	p.E1231Q	ENST00000342788	NM_005235.2	1231	Gag/Cag																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560994	9560994	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	75	619	0	ENST00000353224.5:c.788A>T	p.Asp263Val	p.D263V	ENST00000353224	NM_177990.2	263	gAc/gTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295262	1295262	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0063202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	274	473	0				ENST00000310581	NM_198253.2																																																																																	
PARK2	5071	MSKCC	GRCh37	6	162206848	162206848	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	78	531	0	ENST00000366898.1:c.827A>G	p.Gln276Arg	p.Q276R	ENST00000366898	NM_004562.2	276	cAg/cGg																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29207468	29207468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063202-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	163	409	0	ENST00000240100.2:c.328G>A	p.Glu110Lys	p.E110K	ENST00000240100	NM_001394.6	110	Gag/Aag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0063277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	22	601	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0063277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	359	735	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175788	112175788	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	123	664	0	ENST00000257430.4:c.4497del	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1499	ggA/gg																																																																															
APC	324	MSKCC	GRCh37	5	112174759	112174762	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0063277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	119	576	0	ENST00000257430.4:c.3471_3474del	p.Glu1157AspfsTer7	p.E1157Dfs*7	ENST00000257430	NM_000038.5	1156	gaAGAG/ga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412647	63412648	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0063277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	271	291	0	ENST00000330258.3:c.519dup	p.Ser174Ter	p.S174*	ENST00000330258	NM_152424.3	173	-/T																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50492582	50492582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	46	502	0	ENST00000394963.4:c.1478G>A	p.Arg493Gln	p.R493Q	ENST00000394963	NM_003076.4	493	cGa/cAa																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625390	69625390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	130	632	0	ENST00000334134.2:c.403C>T	p.Arg135Trp	p.R135W	ENST00000334134	NM_005247.2	135	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0063277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	196	309	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434243	49434243	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			908	180	866	0	ENST00000301067.7:c.7310del	p.Pro2437HisfsTer48	p.P2437Hfs*48	ENST00000301067	NM_003482.3	2437	cCa/ca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628619	187628619	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	178	706	0	ENST00000441802.2:c.2363A>G	p.Tyr788Cys	p.Y788C	ENST00000441802	NM_005245.3	788	tAc/tGc																																																																															
XIAP	331	MSKCC	GRCh37	X	123040897	123040897	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0063277-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	48	172	0	ENST00000355640.3:c.1360A>G	p.Met454Val	p.M454V	ENST00000355640		454	Atg/Gtg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0063279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	85	392	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0063279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	266	803	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0063279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	130	661	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89813078	89813078	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs61753269		P-0063279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	126	738	0	ENST00000389301.3:c.3427C>G	p.Leu1143Val	p.L1143V	ENST00000389301	NM_000135.2	1143	Ctg/Gtg																																																																															
STK11	6794	MSKCC	GRCh37	19	1218444	1218445	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0063279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	357	754	0	ENST00000326873.7:c.320dup	p.His107GlnfsTer56	p.H107Qfs*56	ENST00000326873	NM_000455.4	107	cac/cAac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600012	10600013	+	missense_variant	Missense_Mutation	DNP	CA	CA	GG			P-0063279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	238	835	1	ENST00000171111.5:c.1563_1564delinsCC	p.Ala522Pro	p.A522P	ENST00000171111	NM_203500.1	521	gcTGct/gcCCct																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965928	25965928	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0063279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	147	741	0	ENST00000435504.4:c.3278C>G	p.Ser1093Ter	p.S1093*	ENST00000435504		1093	tCa/tGa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267699	198267699	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	242	435	0	ENST00000335508.6:c.1780C>G	p.Arg594Gly	p.R594G	ENST00000335508	NM_012433.2	594	Cga/Gga																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508750	106508750	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	178	757	0	ENST00000359195.3:c.744C>A	p.Phe248Leu	p.F248L	ENST00000359195	NM_002649.2	248	ttC/ttA																																																																															
ATM	472	MSKCC	GRCh37	11	108119822	108119822	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			277	54	393	0	ENST00000278616.4:c.1228G>C	p.Val410Leu	p.V410L	ENST00000278616	NM_000051.3	410	Gtg/Ctg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			228	19	374	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861799	57861799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			194	20	557	0	ENST00000228682.2:c.1100C>A	p.Pro367His	p.P367H	ENST00000228682	NM_005269.2	367	cCt/cAt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109974	115109974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			141	17	560	0	ENST00000257566.3:c.1904G>T	p.Arg635Leu	p.R635L	ENST00000257566	NM_016569.3	635	cGc/cTc																																																																															
AKT1	207	MSKCC	GRCh37	14	105239324	105239324	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			181	26	735	0	ENST00000349310.3:c.1063G>C	p.Glu355Gln	p.E355Q	ENST00000349310	NM_001014432.1	355	Gag/Cag																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732517	74732517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			195	36	565	0	ENST00000359995.5:c.392G>A	p.Arg131Gln	p.R131Q	ENST00000359995	NM_001195427.1	131	cGg/cAg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39542597	39542597	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			272	39	434	0	ENST00000262039.4:c.401G>T	p.Gly134Val	p.G134V	ENST00000262039	NM_002647.2	134	gGc/gTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1219355	1219356	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			148	36	511	0	ENST00000326873.7:c.407_408delinsAT	p.Met136Asn	p.M136N	ENST00000326873	NM_000455.4	136	aTG/aAT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170431	11170431	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			134	15	445	0	ENST00000344626.4:c.4638C>G	p.Ile1546Met	p.I1546M	ENST00000344626	NM_003072.3	1546	atC/atG																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46277781	46277781	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			205	29	438	0	ENST00000371998.3:c.3579G>C	p.Leu1193Phe	p.L1193F	ENST00000371998		1193	ttG/ttC																																																																															
EP300	2033	MSKCC	GRCh37	22	41489064	41489064	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			172	28	309	0	ENST00000263253.7:c.56C>G	p.Ser19Ter	p.S19*	ENST00000263253	NM_001429.3	19	tCa/tGa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143067120	143067120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			234	30	457	0	ENST00000262992.4:c.1593C>A	p.Ser531Arg	p.S531R	ENST00000262992	NM_001101669.1	531	agC/agA																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			316	42	487	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332721	153332721	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			290	33	645	0	ENST00000281708.4:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000281708	NM_033632.3	79	Gaa/Caa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			68	11	485	0				ENST00000310581	NM_198253.2																																																																																	
LATS1	9113	MSKCC	GRCh37	6	150005302	150005302	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			209	50	712	0	ENST00000253339.5:c.923C>G	p.Ser308Cys	p.S308C	ENST00000253339		308	tCc/tGc																																																																															
HGF	3082	MSKCC	GRCh37	7	81335706	81335706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	24	446	0	ENST00000222390.5:c.1654G>A	p.Asp552Asn	p.D552N	ENST00000222390	NM_000601.4	552	Gat/Aat																																																																															
BRAF	673	MSKCC	GRCh37	7	140477853	140477853	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs180177036		P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	20	457	0	ENST00000288602.6:c.1455G>C	p.Leu485Phe	p.L485F	ENST00000288602	NM_004333.4	485	ttG/ttC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151842278	151842278	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			277	27	605	0	ENST00000262189.6:c.14134G>C	p.Glu4712Gln	p.E4712Q	ENST00000262189	NM_170606.2	4712	Gaa/Caa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884435	151884435	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			323	41	473	0	ENST00000262189.6:c.4920G>C	p.Glu1640Asp	p.E1640D	ENST00000262189	NM_170606.2	1640	gaG/gaC																																																																															
LYN	4067	MSKCC	GRCh37	8	56864525	56864525	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs868430124		P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			179	17	428	0	ENST00000519728.1:c.488G>A	p.Gly163Glu	p.G163E	ENST00000519728	NM_002350.3	163	gGa/gAa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980596	70980596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			249	20	628	0	ENST00000276594.2:c.781G>T	p.Gly261Cys	p.G261C	ENST00000276594	NM_024504.3	261	Ggt/Tgt																																																																															
TEK	7010	MSKCC	GRCh37	9	27213589	27213589	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			185	20	390	0	ENST00000380036.4:c.2985G>C	p.Lys995Asn	p.K995N	ENST00000380036	NM_000459.3	995	aaG/aaC																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300039	137300040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755912201		P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			138	10	441	1	ENST00000481739.1:c.331dup	p.Leu111ProfsTer70	p.L111Pfs*70	ENST00000481739	NM_002957.4	108	-/C																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038828	47038828	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062817-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			72	18	229	0	ENST00000329236.7:c.604C>T	p.Gln202Ter	p.Q202*	ENST00000329236	NM_001204466.1	202	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0062990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			191	214	461	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87322806	87322806	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144037140		P-0062990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			210	51	314	0	ENST00000277120.3:c.407G>A	p.Arg136His	p.R136H	ENST00000277120		136	cGt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242483	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACA	AATTAAGAGAAGCAACA	CT			P-0062990-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			263	102	363	0	ENST00000275493.2:c.2237_2253delinsCT	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACA/gCT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117631434	117631434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	25	358	0	ENST00000368508.3:c.6244G>A	p.Ala2082Thr	p.A2082T	ENST00000368508	NM_002944.2	2082	Gct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0063199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	43	315	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	404742	404742	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	90	492	0	ENST00000399788.2:c.4452G>T	p.Met1484Ile	p.M1484I	ENST00000399788	NM_001042603.1	1484	atG/atT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420540	49420541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0063199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			828	47	638	0	ENST00000301067.7:c.15208dup	p.Tyr5070LeufsTer2	p.Y5070Lfs*2	ENST00000301067	NM_003482.3	5070	tat/tTat																																																																															
MGA	23269	MSKCC	GRCh37	15	42005695	42005695	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0063199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	37	462	0	ENST00000219905.7:c.3430+1G>A		p.X1144_splice	ENST00000219905	NM_001164273.1	1144																																																																																
ALK	238	MSKCC	GRCh37	2	30142955	30142955	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			795	47	640	1	ENST00000389048.3:c.571C>A	p.Pro191Thr	p.P191T	ENST00000389048	NM_004304.4	191	Ccc/Acc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636772	176636772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	73	510	0	ENST00000439151.2:c.1372G>A	p.Glu458Lys	p.E458K	ENST00000439151	NM_022455.4	458	Gaa/Aaa																																																																															
HGF	3082	MSKCC	GRCh37	7	81386512	81386512	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0063199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	25	345	0	ENST00000222390.5:c.475G>T	p.Glu159Ter	p.E159*	ENST00000222390	NM_000601.4	159	Gaa/Taa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509348	106509348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063199-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			792	56	592	0	ENST00000359195.3:c.1342G>T	p.Glu448Ter	p.E448*	ENST00000359195	NM_002649.2	448	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0063203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	409	440	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782620		P-0063203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	294	653	0	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0063203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	91	359	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631120	67631120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	207	546	0	ENST00000272342.5:c.1306G>T	p.Ala436Ser	p.A436S	ENST00000272342	NM_019002.3	436	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0063204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	72	539	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
RB1	5925	MSKCC	GRCh37	13	48955550	48955550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913304		P-0063204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	78	370	0	ENST00000267163.4:c.1666C>T	p.Arg556Ter	p.R556*	ENST00000267163	NM_000321.2	556	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0063204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	74	353	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0063207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	16	619	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
STAT3	6774	MSKCC	GRCh37	17	40477045	40477069	+	frameshift_variant	Frame_Shift_Del	DEL	ATGTTGGAGATCACCACAACTGGCA	ATGTTGGAGATCACCACAACTGGCA	-			P-0063207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	64	646	0	ENST00000264657.5:c.1376_1400del	p.Leu459SerfsTer17	p.L459Sfs*17	ENST00000264657	NM_139276.2	459	tTGCCAGTTGTGGTGATCTCCAACATc/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660548		P-0061666-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			289	545	706	1	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3828768	3828768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061666-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			406	39	495	0	ENST00000262367.5:c.1874G>A	p.Arg625His	p.R625H	ENST00000262367	NM_004380.2	625	cGc/cAc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858476	57858476	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199685332		P-0061666-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			244	206	544	0	ENST00000228682.2:c.214C>T	p.Arg72Trp	p.R72W	ENST00000228682	NM_005269.2	72	Cgg/Tgg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845969	156845974	+	inframe_deletion	In_Frame_Del	DEL	GCCTGA	GCCTGA	-			P-0061666-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			1116	172	605	0	ENST00000524377.1:c.1601_1606del	p.Pro534_Glu535del	p.P534_E535del	ENST00000524377	NM_002529.3	533	ctGCCTGAg/ctg																																																																															
RAC1	5879	MSKCC	GRCh37	7	6431635	6431635	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0061666-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			133	94	247	0	ENST00000356142.4:c.188A>C	p.Asp63Ala	p.D63A	ENST00000356142	NM_018890.3	63	gAt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1202793339		P-0063290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	116	687	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0063290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	59	268	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
REST	5978	MSKCC	GRCh37	4	57777087	57777087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs909981105		P-0063290-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			724	52	435	0	ENST00000309042.7:c.283G>A	p.Glu95Lys	p.E95K	ENST00000309042	NM_005612.4	95	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0063302-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	91	368	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0063302-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	71	214	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830339	72830339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063302-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	115	540	0	ENST00000268489.5:c.6242C>T	p.Pro2081Leu	p.P2081L	ENST00000268489	NM_006885.3	2081	cCa/cTa																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936836	150936836	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0063302-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	103	366	0	ENST00000271640.5:c.3874del	p.Ter1292ArgfsTer26	p.*1292Rfs*26	ENST00000271640	NM_001145415.1	1291	cTt/ct																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176015393	176015393	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063302-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	69	250	0	ENST00000367669.3:c.1345G>C	p.Glu449Gln	p.E449Q	ENST00000367669	NM_022457.5	449	Gaa/Caa																																																																															
CTR9	9646	MSKCC	GRCh37	11	10797095	10797095	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0063302-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	109	303	0	ENST00000361367.2:c.3010A>T	p.Met1004Leu	p.M1004L	ENST00000361367	NM_014633.3	1004	Atg/Ttg																																																																															
BARD1	580	MSKCC	GRCh37	2	215657111	215657111	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063302-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	96	324	0	ENST00000260947.4:c.274A>G	p.Ile92Val	p.I92V	ENST00000260947	NM_000465.2	92	Ata/Gta																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081560	143081560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063302-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	107	404	0	ENST00000262992.4:c.1514G>A	p.Arg505Lys	p.R505K	ENST00000262992	NM_001101669.1	505	aGa/aAa																																																																															
AGO2	27161	MSKCC	GRCh37	8	141569568	141569568	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0063302-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	92	413	0	ENST00000220592.5:c.716A>G	p.Asp239Gly	p.D239G	ENST00000220592	NM_012154.3	239	gAt/gGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29687614	29687614	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0063304-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	356	309	0	ENST00000358273.4:c.8270C>G	p.Thr2757Ser	p.T2757S	ENST00000358273	NM_001042492.2	2757	aCt/aGt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852108	63852108	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062988-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			754	141	759	2	ENST00000279873.7:c.2886G>C	p.Met962Ile	p.M962I	ENST00000279873	NM_032199.2	962	atG/atC																																																																															
RB1	5925	MSKCC	GRCh37	13	49039379	49039413	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTTACAAGTTTCCTAGTTCACCCTTACGGATTC	CCCTTACAAGTTTCCTAGTTCACCCTTACGGATTC	-			P-0062988-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			523	70	651	2	ENST00000267163.4:c.2365_2399del	p.Pro789TrpfsTer14	p.P789Wfs*14	ENST00000267163	NM_000321.2	788	agCCCTTACAAGTTTCCTAGTTCACCCTTACGGATTCct/agct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0062988-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			555	139	712	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
PIK3R2	5296	MSKCC	GRCh37	19	18266860	18266860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062988-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			614	126	699	5	ENST00000222254.8:c.171G>T	p.Met57Ile	p.M57I	ENST00000222254	NM_005027.3	57	atG/atT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117641128	117641128	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062988-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			814	99	824	3	ENST00000368508.3:c.5843G>T	p.Arg1948Leu	p.R1948L	ENST00000368508	NM_002944.2	1948	cGt/cTt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68939461	68939461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062988-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			248	24	431	0	ENST00000288368.4:c.446G>A	p.Cys149Tyr	p.C149Y	ENST00000288368	NM_024870.2	149	tGc/tAc																																																																															
FANCC	2176	MSKCC	GRCh37	9	97869397	97869397	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062988-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			748	162	792	6	ENST00000289081.3:c.1484T>A	p.Leu495Gln	p.L495Q	ENST00000289081	NM_000136.2	495	cTg/cAg																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763733111		P-0063136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	32	496	0	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0063136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	25	299	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591861	48591861	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0063136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	35	573	0	ENST00000342988.3:c.1025del	p.Pro342LeufsTer42	p.P342Lfs*42	ENST00000342988	NM_005359.5	342	Cct/ct																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971129	21971129	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	27	781	0	ENST00000304494.5:c.229A>T	p.Thr77Ser	p.T77S	ENST00000304494	NM_000077.4	77	Act/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0063147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	16	747	2	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0063147-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	10	374	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579190	7579354	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAAAACACTGACAGGAAGCCAAAGGGTGAAGAGGAATCCCAAAGTTCCAAACAAAAGAAATGCAGGGGGATACGGCCAGGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAGAAGCCC	AAAAAACACTGACAGGAAGCCAAAGGGTGAAGAGGAATCCCAAAGTTCCAAACAAAAGAAATGCAGGGGGATACGGCCAGGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAGAAGCCC	-			P-0063149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			21	149	205	0	ENST00000269305.4:c.333_375+122del		p.X111_splice	ENST00000269305	NM_001126112.2	111																																																																																
E2F3	1871	MSKCC	GRCh37	6	20402599	20402613	+	inframe_deletion	In_Frame_Del	DEL	GCCGCCGCCGCCGCT	GCCGCCGCCGCCGCT	-			P-0063149-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	109	759	0	ENST00000346618.3:c.145_159del	p.Ala49_Ala53del	p.A49_A53del	ENST00000346618	NM_001949.4	46	GCCGCCGCCGCCGCT/-																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0063150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	57	470	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RET	5979	MSKCC	GRCh37	10	43609994	43609994	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148935214		P-0063150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			909	222	865	0	ENST00000355710.3:c.1946C>T	p.Ser649Leu	p.S649L	ENST00000355710	NM_020975.4	649	tCg/tTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0063150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	123	567	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094347	27094347	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0063150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	198	640	0	ENST00000324856.7:c.3055G>T	p.Glu1019Ter	p.E1019*	ENST00000324856	NM_006015.4	1019	Gag/Tag																																																																															
TP63	8626	MSKCC	GRCh37	3	189582193	189582193	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1198643405		P-0063150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	75	608	1	ENST00000264731.3:c.752G>A	p.Arg251His	p.R251H	ENST00000264731	NM_003722.4	251	cGt/cAt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986800	36986800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	151	615	0	ENST00000354822.5:c.889G>A	p.Gly297Ser	p.G297S	ENST00000354822	NM_001079668.2	297	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579396	7579397	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0063150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	334	805	0	ENST00000269305.4:c.290_291insG	p.Ser99PhefsTer50	p.S99Ffs*50	ENST00000269305	NM_001126112.2	97	gtc/gtGc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492814	56492815	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0063150-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	198	646	0	ENST00000407977.2:c.124_125insT	p.Ala42ValfsTer33	p.A42Vfs*33	ENST00000407977		42	gca/gTca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs1057517840		P-0063157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	391	819	1	ENST00000269305.4:c.626_627del	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0063157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	319	569	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RB1	5925	MSKCC	GRCh37	13	48937095	48937095	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0063157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			63	64	210	0	ENST00000267163.4:c.861+2T>G		p.X287_splice	ENST00000267163	NM_000321.2	287																																																																																
GAB2	9846	MSKCC	GRCh37	11	78128726	78128726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			763	173	863	0	ENST00000361507.4:c.41G>A	p.Arg14Lys	p.R14K	ENST00000361507	NM_080491.2	14	aGg/aAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829005	72829007	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0063157-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	166	803	1	ENST00000268489.5:c.7574_7576del	p.Pro2525del	p.P2525del	ENST00000268489	NM_006885.3	2525	cCTCag/cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0063099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	136	441	1	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
SERPINB4	6318	MSKCC	GRCh37	18	61306969	61306969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	121	385	0	ENST00000341074.5:c.511G>A	p.Asp171Asn	p.D171N	ENST00000341074	NM_002974.2	171	Gat/Aat																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484406	57484406	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0063099-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	132	412	0	ENST00000371085.3:c.587A>T	p.Asp196Val	p.D196V	ENST00000371085	NM_000516.4	196	gAc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs483352697		P-0062707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			987	364	700	0	ENST00000269305.4:c.587G>C	p.Arg196Pro	p.R196P	ENST00000269305	NM_001126112.2	196	cGa/cCa																																																																															
CBL	867	MSKCC	GRCh37	11	119149280	119149280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs991981291		P-0062707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			829	236	579	0	ENST00000264033.4:c.1288G>A	p.Val430Met	p.V430M	ENST00000264033	NM_005188.3	430	Gtg/Atg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99486193	99486193	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374121578		P-0062707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			867	126	581	0	ENST00000268035.6:c.3499C>T	p.Arg1167Trp	p.R1167W	ENST00000268035	NM_000875.3	1167	Cgg/Tgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0062707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			818	170	536	2	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647164	23647164	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			937	112	585	0	ENST00000261584.4:c.703A>G	p.Thr235Ala	p.T235A	ENST00000261584	NM_024675.3	235	Aca/Gca																																																																															
NF1	4763	MSKCC	GRCh37	17	29546122	29546122	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs894292181		P-0062707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			987	116	508	0	ENST00000358273.4:c.1627C>T	p.Gln543Ter	p.Q543*	ENST00000358273	NM_001042492.2	543	Cag/Tag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41223177	41223177	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			921	235	609	0	ENST00000357654.3:c.4754C>G	p.Pro1585Arg	p.P1585R	ENST00000357654	NM_007294.3	1585	cCa/cGa																																																																															
CD79B	974	MSKCC	GRCh37	17	62006601	62006601	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			837	253	566	0	ENST00000392795.3:c.678C>A	p.His226Gln	p.H226Q	ENST00000392795	NM_001039933.1	226	caC/caA																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248759	212248759	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			735	92	516	0	ENST00000342788.4:c.3508C>G	p.Pro1170Ala	p.P1170A	ENST00000342788	NM_005235.2	1170	Cct/Gct																																																																															
POT1	25913	MSKCC	GRCh37	7	124499166	124499166	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0062707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	103	371	0	ENST00000357628.3:c.547G>T	p.Val183Leu	p.V183L	ENST00000357628	NM_015450.2	183	Gta/Tta																																																																															
SMO	6608	MSKCC	GRCh37	7	128829012	128829012	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062707-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	127	395	0	ENST00000249373.3:c.20C>A	p.Ala7Glu	p.A7E	ENST00000249373	NM_005631.4	7	gCg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061126-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			39	74	330	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
MSI1	4440	MSKCC	GRCh37	12	120791147	120791147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061126-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	14	405	0	ENST00000257552.2:c.688C>T	p.Arg230Trp	p.R230W	ENST00000257552	NM_002442.3	230	Cgg/Tgg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31511274	31511275	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0061126-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	23	256	0	ENST00000344624.3:c.1299dup	p.Thr434TyrfsTer7	p.T434Yfs*7	ENST00000344624		433	-/T																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0062347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	174	562	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584572	48584572	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	214	634	0	ENST00000342988.3:c.745C>T	p.Gln249Ter	p.Q249*	ENST00000342988	NM_005359.5	249	Cag/Tag																																																																															
RB1	5925	MSKCC	GRCh37	13	48955394	48955394	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs886043247		P-0062347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	136	396	1	ENST00000267163.4:c.1510C>T	p.Gln504Ter	p.Q504*	ENST00000267163	NM_000321.2	504	Cag/Tag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217267	66217267	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs199801676		P-0062347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	202	594	0	ENST00000273854.3:c.2348G>T	p.Gly783Val	p.G783V	ENST00000273854	NM_004439.5	783	gGt/gTt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713385	40713385	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			784	228	807	0	ENST00000373198.4:c.4130G>T	p.Arg1377Leu	p.R1377L	ENST00000373198	NM_133170.3	1377	cGa/cTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0062347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	146	412	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94203684	94203684	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	171	496	0	ENST00000323929.3:c.970G>C	p.Asp324His	p.D324H	ENST00000323929	NM_005591.3	324	Gat/Cat																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0062347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			826	254	771	1	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52729052	52729052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	317	811	0	ENST00000322088.6:c.1744G>T	p.Ala582Ser	p.A582S	ENST00000322088	NM_014225.5	582	Gct/Tct																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143114290	143114290	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	140	431	0	ENST00000262992.4:c.1131G>C	p.Lys377Asn	p.K377N	ENST00000262992	NM_001101669.1	377	aaG/aaC																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871172	35871172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	88	460	0	ENST00000303115.3:c.394C>A	p.Pro132Thr	p.P132T	ENST00000303115	NM_002185.3	132	Cct/Act																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057672	180057672	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	107	730	0	ENST00000261937.6:c.283G>C	p.Val95Leu	p.V95L	ENST00000261937	NM_182925.4	95	Gtg/Ctg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805573	32805573	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			816	257	806	0	ENST00000374899.4:c.438G>C	p.Arg146Ser	p.R146S	ENST00000374899	NM_018833.2	146	agG/agC																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93964484	93964484	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	170	500	1	ENST00000369303.4:c.2413C>A	p.Pro805Thr	p.P805T	ENST00000369303	NM_004440.3	805	Ccc/Acc																																																																															
POT1	25913	MSKCC	GRCh37	7	124511062	124511062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	154	443	0	ENST00000357628.3:c.158C>T	p.Thr53Ile	p.T53I	ENST00000357628	NM_015450.2	53	aCa/aTa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971038	21971038	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370823171		P-0062347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			742	177	756	0	ENST00000304494.5:c.320G>A	p.Arg107His	p.R107H	ENST00000304494	NM_000077.4	107	cGc/cAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239927	98239927	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1438523462		P-0062347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	353	600	0	ENST00000331920.6:c.1405G>T	p.Val469Leu	p.V469L	ENST00000331920	NM_000264.3	469	Gtg/Ttg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413030	63413030	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0062347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	54	778	0	ENST00000330258.3:c.137C>A	p.Ser46Ter	p.S46*	ENST00000330258	NM_152424.3	46	tCa/tAa																																																																															
XIAP	331	MSKCC	GRCh37	X	123034505	123034505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062347-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	22	292	0	ENST00000355640.3:c.1262G>T	p.Ser421Ile	p.S421I	ENST00000355640		421	aGt/aTt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0063052-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	47	366	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934874		P-0063052-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	90	624	0	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971206	21971206	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0063052-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	86	540	0	ENST00000304494.5:c.152T>A	p.Val51Asp	p.V51D	ENST00000304494	NM_000077.4	51	gTc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0063052-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	93	359	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PAK1	5058	MSKCC	GRCh37	11	77103499	77103501	+	inframe_deletion	In_Frame_Del	DEL	TAG	TAG	-			P-0063052-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	39	520	0	ENST00000356341.3:c.65_67del	p.Thr22del	p.T22del	ENST00000356341	NM_002576.4	22	aCTAtg/atg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131895053	131895053	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0063052-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	31	290	0	ENST00000265335.6:c.207T>A	p.Asp69Glu	p.D69E	ENST00000265335		69	gaT/gaA																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923342	9923342	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs397514557		P-0063054-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	42	572	0	ENST00000330684.3:c.1945C>G	p.Leu649Val	p.L649V	ENST00000330684	NM_001134407.1	649	Ctg/Gtg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121575	2121575	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0063054-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	29	629	0	ENST00000219476.3:c.1904A>T	p.Asp635Val	p.D635V	ENST00000219476	NM_000548.3	635	gAt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112170789	112170790	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0063054-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			178	23	549	0	ENST00000257430.4:c.1885_1886insA	p.Leu629TyrfsTer5	p.L629Yfs*5	ENST00000257430	NM_000038.5	629	tta/tAta																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0063055-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	38	482	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165122	47165122	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0063055-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	66	422	0	ENST00000409792.3:c.1004G>T	p.Arg335Ile	p.R335I	ENST00000409792	NM_014159.6	335	aGa/aTa																																																																															
MED12	9968	MSKCC	GRCh37	X	70357726	70357726	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0063055-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	63	797	0	ENST00000374080.3:c.5977C>T	p.Gln1993Ter	p.Q1993*	ENST00000374080		1993	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587781525		P-0063056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	129	640	0	ENST00000269305.4:c.842A>G	p.Asp281Gly	p.D281G	ENST00000269305	NM_001126112.2	281	gAc/gGc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs193920894		P-0063056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	61	515	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579381	7579381	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0063056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	52	692	0	ENST00000269305.4:c.306del	p.Tyr103ThrfsTer20	p.Y103Tfs*20	ENST00000269305	NM_001126112.2	102	acC/ac																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523517	106523517	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0063056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	83	464	0	ENST00000359195.3:c.2669A>C	p.Lys890Thr	p.K890T	ENST00000359195	NM_002649.2	890	aAa/aCa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18649086	18649086	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0063056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	21	409	0	ENST00000266497.5:c.2761A>C	p.Lys921Gln	p.K921Q	ENST00000266497		921	Aag/Cag																																																																															
MGA	23269	MSKCC	GRCh37	15	42059315	42059315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0063056-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	26	722	1	ENST00000219905.7:c.9035C>T	p.Pro3012Leu	p.P3012L	ENST00000219905	NM_001164273.1	3012	cCt/cTt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0063059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	242	664	0	ENST00000346208.3:c.1220dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811768	102811768	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	270	604	0	ENST00000307046.8:c.416C>G	p.Ser139Cys	p.S139C	ENST00000307046	NM_001111285.1	139	tCt/tGt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912177	32912178	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0063059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	190	427	0	ENST00000380152.3:c.3687_3688dup	p.Ser1230PhefsTer10	p.S1230Ffs*10	ENST00000380152		1229	gtt/gTTtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574014	7574014	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0063059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	183	452	0	ENST00000269305.4:c.1013T>G	p.Phe338Cys	p.F338C	ENST00000269305	NM_001126112.2	338	tTc/tGc																																																																															
NPM1	4869	MSKCC	GRCh37	5	170819719	170819719	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0063059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	117	206	0	ENST00000296930.5:c.358G>C	p.Glu120Gln	p.E120Q	ENST00000296930	NM_002520.6	120	Gag/Cag																																																																															
ARAF	369	MSKCC	GRCh37	X	47430782	47430782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0063059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	178	644	0	ENST00000377045.4:c.1747G>A	p.Glu583Lys	p.E583K	ENST00000377045	NM_001654.4	583	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0062303-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			417	185	470	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0062303-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			434	179	608	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118709	115118709	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs756408358		P-0062303-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			528	203	510	0	ENST00000257566.3:c.632A>C	p.Asn211Thr	p.N211T	ENST00000257566	NM_016569.3	211	aAc/aCc																																																																															
ATM	472	MSKCC	GRCh37	11	108121571	108121571	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781841		P-0062303-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			446	176	461	0	ENST00000278616.4:c.1379C>T	p.Thr460Met	p.T460M	ENST00000278616	NM_000051.3	460	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0062547-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			486	811	441	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55210075	55210075	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0062547-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			431	750	402	0	ENST00000275493.2:c.185T>G	p.Leu62Arg	p.L62R	ENST00000275493	NM_005228.3	62	cTt/cGt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891188	101891188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062547-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			249	208	369	0	ENST00000374994.4:c.149C>T	p.Thr50Ile	p.T50I	ENST00000374994	NM_004612.2	50	aCa/aTa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720826	89720826	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062547-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			93	79	162	0	ENST00000371953.3:c.977A>G	p.Asp326Gly	p.D326G	ENST00000371953	NM_000314.4	326	gAc/gGc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720679	89720679	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs398123329		P-0062547-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			72	74	111	0	ENST00000371953.3:c.830C>T	p.Thr277Ile	p.T277I	ENST00000371953	NM_000314.4	277	aCa/aTa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3824616	3824616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062547-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			563	136	471	0	ENST00000262367.5:c.2237C>T	p.Pro746Leu	p.P746L	ENST00000262367	NM_004380.2	746	cCa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578385	7578385	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062547-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	290	531	0	ENST00000269305.4:c.545del	p.Cys182SerfsTer65	p.C182Sfs*65	ENST00000269305	NM_001126112.2	182	tGc/tc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72076788	72076788	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs754424709		P-0062547-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			542	145	541	0	ENST00000357731.5:c.709C>A	p.Pro237Thr	p.P237T	ENST00000357731	NM_173808.2	237	Ccc/Acc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900087	151900087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062547-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			365	75	411	0	ENST00000262189.6:c.4024G>A	p.Glu1342Lys	p.E1342K	ENST00000262189	NM_170606.2	1342	Gaa/Aaa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193119459	193119459	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	329	495	0	ENST00000367435.3:c.854C>G	p.Pro285Arg	p.P285R	ENST00000367435	NM_024529.4	285	cCt/cGt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120502048	120502048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	234	601	0	ENST00000256646.2:c.1993C>T	p.Arg665Cys	p.R665C	ENST00000256646	NM_024408.3	665	Cgc/Tgc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250506	110250506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	191	610	0	ENST00000374672.4:c.169G>T	p.Val57Leu	p.V57L	ENST00000374672	NM_004235.4	57	Gtg/Ttg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0062824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			806	85	493	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0062824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			931	54	564	0	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404589	8404589	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0062824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	42	352	0	ENST00000356435.5:c.4158C>G	p.Tyr1386Ter	p.Y1386*	ENST00000356435		1386	taC/taG																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143191873	143191873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			610	35	344	0	ENST00000262992.4:c.558G>T	p.Met186Ile	p.M186I	ENST00000262992	NM_001101669.1	186	atG/atT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201828	66201828	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0062824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			665	54	418	0	ENST00000273854.3:c.2674G>T	p.Glu892Ter	p.E892*	ENST00000273854	NM_004439.5	892	Gag/Tag																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781291	9781291	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369950232		P-0062824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			778	75	430	0	ENST00000377346.4:c.1796C>T	p.Ser599Leu	p.S599L	ENST00000377346	NM_005026.3	599	tCg/tTg																																																																															
CBL	867	MSKCC	GRCh37	11	119103291	119103291	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			650	45	461	0	ENST00000264033.4:c.329G>T	p.Gly110Val	p.G110V	ENST00000264033	NM_005188.3	110	gGa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398286	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0062824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			366	53	253	0	ENST00000256078.4:c.33_34delinsCT	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	11	gcTGgt/gcCTgt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004738	16004738	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			785	46	507	0	ENST00000268712.3:c.2516A>G	p.Asp839Gly	p.D839G	ENST00000268712	NM_006311.3	839	gAt/gGt																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17387637	17387637	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766641020		P-0062824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			772	69	530	0	ENST00000359435.4:c.705G>A	p.Met235Ile	p.M235I	ENST00000359435	NM_001033549.1	235	atG/atA																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55124963	55124963	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			623	54	376	0	ENST00000257290.5:c.28G>T	p.Val10Phe	p.V10F	ENST00000257290	NM_006206.4	10	Gtc/Ttc																																																																															
KDR	3791	MSKCC	GRCh37	4	55968173	55968173	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			511	41	319	0	ENST00000263923.4:c.2157C>A	p.Asn719Lys	p.N719K	ENST00000263923	NM_002253.2	719	aaC/aaA																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100253	157100253	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1235258455		P-0062824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			696	69	394	0	ENST00000346085.5:c.1190C>T	p.Ser397Leu	p.S397L	ENST00000346085	NM_020732.3	397	tCg/tTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81372699	81372700	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0062824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			617	110	416	0	ENST00000222390.5:c.834_835delinsAA	p.Arg279Ser	p.R279S	ENST00000222390	NM_000601.4	278	acCCgc/acAAgc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8338951	8338951	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			524	42	367	0	ENST00000356435.5:c.5350C>A	p.Leu1784Ile	p.L1784I	ENST00000356435		1784	Cta/Ata																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500842	8500842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			777	74	478	0	ENST00000356435.5:c.2040G>T	p.Trp680Cys	p.W680C	ENST00000356435		680	tgG/tgT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971056	21971056	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062824-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			877	96	554	0	ENST00000304494.5:c.302G>T	p.Gly101Val	p.G101V	ENST00000304494	NM_000077.4	101	gGg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0062999-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	70	549	1	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0063013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	76	551	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0063013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	40	290	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969354	44969354	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0063013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	50	435	0	ENST00000377967.4:c.4037del	p.Asn1346MetfsTer10	p.N1346Mfs*10	ENST00000377967	NM_021140.2	1346	Aat/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0063033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	50	270	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856403	111856403	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749162265		P-0063033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			756	133	509	0	ENST00000341259.2:c.454G>A	p.Gly152Arg	p.G152R	ENST00000341259	NM_005475.2	152	Ggg/Agg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633146	3633146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0063033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			778	134	551	0	ENST00000294008.3:c.5105C>A	p.Ser1702Tyr	p.S1702Y	ENST00000294008	NM_032444.2	1702	tCc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578266	+	missense_variant	Missense_Mutation	DNP	AT	AT	GC			P-0063033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	140	641	1	ENST00000269305.4:c.583_584delinsGC	p.Ile195Ala	p.I195A	ENST00000269305	NM_001126112.2	195	ATc/GCc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99149864	99149864	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199762176		P-0063033-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	93	376	0	ENST00000074304.5:c.176C>T	p.Ser59Leu	p.S59L	ENST00000074304	NM_001134224.1	59	tCg/tTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89882918	89883052	+	splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	CTCCCGCGGCCTGCCGCGCCCACCTACCCAGCAGCTCGGCCCAGGCCCTCCGGCGGCCCCCTGGGTCCTGGCCCGAGGCGGAGTTCGGGACCCACGAGTCGGACATGGCCTTGGCGCCTACAGCCCCGGCGGCGG	CTCCCGCGGCCTGCCGCGCCCACCTACCCAGCAGCTCGGCCCAGGCCCTCCGGCGGCCCCCTGGGTCCTGGCCCGAGGCGGAGTTCGGGACCCACGAGTCGGACATGGCCTTGGCGCCTACAGCCCCGGCGGCGG	-			P-0063043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1150	76	391	0	ENST00000389301.3:c.-29_79+27del		p.X10_splice	ENST00000389301	NM_000135.2	10																																																																																
TP53	7157	MSKCC	GRCh37	17	7579389	7579399	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAAGGGACA	GGGAAGGGACA	-			P-0063043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	945	730	0	ENST00000269305.4:c.288_298del	p.Val97GlufsTer48	p.V97Efs*48	ENST00000269305	NM_001126112.2	96	tcTGTCCCTTCCCag/tcag																																																																															
XPO1	7514	MSKCC	GRCh37	2	61711208	61711218	+	frameshift_variant	Frame_Shift_Del	DEL	GTTCGTTCTAT	GTTCGTTCTAT	-			P-0063043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	60	421	0	ENST00000401558.2:c.2531_2541del	p.His844LeufsTer25	p.H844Lfs*25	ENST00000401558	NM_003400.3	844	cATAGAACGAAC/c																																																																															
TEK	7010	MSKCC	GRCh37	9	27202989	27202989	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0063043-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			867	290	532	0	ENST00000380036.4:c.2081T>G	p.Ile694Ser	p.I694S	ENST00000380036	NM_000459.3	694	aTc/aGc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940780	71940780	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs1415696831		P-0062021-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	41	584	0	ENST00000298229.2:c.827C>G	p.Ser276Ter	p.S276*	ENST00000298229	NM_001567.3	276	tCa/tGa																																																																															
RB1	5925	MSKCC	GRCh37	13	49039501	49039501	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0062021-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	10	338	0	ENST00000267163.4:c.2486C>G	p.Ser829Ter	p.S829*	ENST00000267163	NM_000321.2	829	tCa/tGa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821842	72821842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062021-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	36	509	0	ENST00000268489.5:c.10333G>A	p.Glu3445Lys	p.E3445K	ENST00000268489	NM_006885.3	3445	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0062725-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			704	344	1102	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440912	52440912	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0062725-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			679	214	926	0	ENST00000460680.1:c.592G>T	p.Glu198Ter	p.E198*	ENST00000460680	NM_004656.3	198	Gag/Tag																																																																															
RET	5979	MSKCC	GRCh37	10	43615555	43615555	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0062725-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			856	217	907	0	ENST00000355710.3:c.2636del	p.Asn879ThrfsTer4	p.N879Tfs*4	ENST00000355710	NM_020975.4	878	agA/ag																																																																															
CALR	811	MSKCC	GRCh37	19	13051363	13051363	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062725-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1208	73	1013	0	ENST00000316448.5:c.711C>A	p.Asp237Glu	p.D237E	ENST00000316448	NM_004343.3	237	gaC/gaA																																																																															
RASA1	5921	MSKCC	GRCh37	5	86628400	86628400	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062725-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			717	158	610	0	ENST00000274376.6:c.769A>C	p.Ser257Arg	p.S257R	ENST00000274376	NM_002890.2	257	Agt/Cgt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519841		P-0062851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	213	476	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0062851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	243	664	0	ENST00000257430.4:c.4391_4394del	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457308	67457308	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	314	854	2	ENST00000327367.4:c.282G>A	p.Trp94Ter	p.W94*	ENST00000327367	NM_005902.3	94	tgG/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0062851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	128	297	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195401	102195401	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	237	531	0	ENST00000263464.3:c.161G>T	p.Gly54Val	p.G54V	ENST00000263464	NM_001165.4	54	gGt/gTt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45422992	45422993	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0062851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	36	591	0	ENST00000262160.6:c.135_136del	p.Leu48GlyfsTer12	p.L48Gfs*12	ENST00000262160	NM_005901.5	45	gtGAaa/gtaa																																																																															
TOP1	7150	MSKCC	GRCh37	20	39729985	39729985	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	52	405	0	ENST00000361337.2:c.1300C>T	p.Arg434Ter	p.R434*	ENST00000361337	NM_003286.2	434	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112155034	112155035	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AATCC			P-0062851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	162	432	0	ENST00000257430.4:c.1308_1312dup	p.Met438IlefsTer18	p.M438Ifs*18	ENST00000257430	NM_000038.5	435	-/AATCC																																																																															
APC	324	MSKCC	GRCh37	5	112173338	112173338	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062851-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	160	463	0	ENST00000257430.4:c.2047A>C	p.Thr683Pro	p.T683P	ENST00000257430	NM_000038.5	683	Act/Cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0062857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	165	660	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0062857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	76	368	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11317099	11317099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201093943		P-0062857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	34	681	0	ENST00000361445.4:c.395G>A	p.Arg132His	p.R132H	ENST00000361445	NM_004958.3	132	cGt/cAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912149	114912149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	185	490	0	ENST00000543371.1:c.1219C>T	p.Arg407Ter	p.R407*	ENST00000543371	NM_001198531.1	407	Cga/Tga																																																																															
FLT1	2321	MSKCC	GRCh37	13	28919631	28919631	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200840674		P-0062857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	45	527	0	ENST00000282397.4:c.2306C>T	p.Ala769Val	p.A769V	ENST00000282397	NM_002019.4	769	gCg/gTg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870487	40870487	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770125478		P-0062857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	56	597	0	ENST00000428826.2:c.916G>A	p.Asp306Asn	p.D306N	ENST00000428826		306	Gac/Aac																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639987	3639987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	75	682	0	ENST00000294008.3:c.3652G>A	p.Asp1218Asn	p.D1218N	ENST00000294008	NM_032444.2	1218	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112177578	112177578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	114	514	0	ENST00000257430.4:c.6287C>T	p.Ser2096Leu	p.S2096L	ENST00000257430	NM_000038.5	2096	tCa/tTa																																																																															
CDK8	1024	MSKCC	GRCh37	13	26978094	26978094	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1160704856		P-0062954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	116	375	0	ENST00000381527.3:c.1271G>A	p.Arg424His	p.R424H	ENST00000381527	NM_001260.1	424	cGt/cAt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89857912	89857912	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760352719		P-0062954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	118	550	0	ENST00000389301.3:c.1258G>A	p.Glu420Lys	p.E420K	ENST00000389301	NM_000135.2	420	Gag/Aag																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741483	17741483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	80	475	0	ENST00000250003.3:c.154C>A	p.His52Asn	p.H52N	ENST00000250003	NM_002478.4	52	Cac/Aac																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607632	46607632	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	91	578	1	ENST00000263734.3:c.1821C>G	p.Ile607Met	p.I607M	ENST00000263734	NM_001430.4	607	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782177		P-0062957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	191	516	0	ENST00000269305.4:c.644G>A	p.Ser215Asn	p.S215N	ENST00000269305	NM_001126112.2	215	aGt/aAt																																																																															
NF2	4771	MSKCC	GRCh37	22	30051652	30051652	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	26	293	0	ENST00000338641.4:c.586C>G	p.Arg196Gly	p.R196G	ENST00000338641	NM_000268.3	196	Cga/Gga																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459532	50459532	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	102	389	0	ENST00000331340.3:c.821G>T	p.Arg274Leu	p.R274L	ENST00000331340	NM_006060.4	274	cGt/cTt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265389	10265389	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	71	570	0	ENST00000340748.4:c.1657C>A	p.His553Asn	p.H553N	ENST00000340748		553	Cac/Aac																																																																															
RB1	5925	MSKCC	GRCh37	13	48947539	48947539	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs1131690892		P-0062961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	119	419	0	ENST00000267163.4:c.1128-2A>G		p.X376_splice	ENST00000267163	NM_000321.2	376																																																																																
NEGR1	257194	MSKCC	GRCh37	1	72748012	72748019	+	frameshift_variant	Frame_Shift_Del	DEL	CCGTGTCC	CCGTGTCC	-			P-0062961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	191	828	0	ENST00000357731.5:c.159_166del	p.Asp54GlyfsTer3	p.D54Gfs*3	ENST00000357731	NM_173808.2	53	ggGGACACGGcg/ggcg																																																																															
RET	5979	MSKCC	GRCh37	10	43598063	43598063	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	150	822	0	ENST00000355710.3:c.611A>T	p.Tyr204Phe	p.Y204F	ENST00000355710	NM_020975.4	204	tAc/tTc																																																																															
MAX	4149	MSKCC	GRCh37	14	65543383	65543399	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TAAAAGGCAACCAAGGG	TAAAAGGCAACCAAGGG	-			P-0062961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	215	723	0	ENST00000358664.4:c.296-18_296-2del		p.X99_splice	ENST00000358664	NM_002382.4	99																																																																																
CDH1	999	MSKCC	GRCh37	16	68772278	68772279	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0062961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	176	665	0	ENST00000261769.5:c.129dup	p.Arg44AlafsTer15	p.R44Afs*15	ENST00000261769	NM_004360.3	43	cgg/cGgg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21346027	21346027	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139823732		P-0062961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	156	948	1	ENST00000215739.8:c.902G>A	p.Gly301Asp	p.G301D	ENST00000215739	NM_006767.3	301	gGt/gAt																																																																															
FYN	2534	MSKCC	GRCh37	6	111983046	111983046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	221	869	1	ENST00000368678.4:c.1501A>G	p.Lys501Glu	p.K501E	ENST00000368678		501	Aaa/Gaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0062965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	14	419	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913407		P-0058720-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			463	205	569	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																															
SETD2	29072	MSKCC	GRCh37	3	47143021	47143021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058720-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			264	120	291	0	ENST00000409792.3:c.4942G>T	p.Val1648Phe	p.V1648F	ENST00000409792	NM_014159.6	1648	Gtt/Ttt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165123	47165123	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0058720-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	123	407	0	ENST00000409792.3:c.1003A>T	p.Arg335Ter	p.R335*	ENST00000409792	NM_014159.6	335	Aga/Tga																																																																															
MED12	9968	MSKCC	GRCh37	X	70357418	70357419	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0058720-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			342	199	667	0	ENST00000374080.3:c.5760dup	p.Met1921HisfsTer130	p.M1921Hfs*130	ENST00000374080		1920	ggc/ggCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0060707-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			298	47	776	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342932	118342932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060707-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	17	544	0	ENST00000534358.1:c.1058G>A	p.Arg353Gln	p.R353Q	ENST00000534358	NM_005933.3	353	cGa/cAa																																																																															
ALK	238	MSKCC	GRCh37	2	29445223	29445223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060707-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	38	602	0	ENST00000389048.3:c.3502G>A	p.Ala1168Thr	p.A1168T	ENST00000389048	NM_004304.4	1168	Gcc/Acc																																																																															
MET	4233	MSKCC	GRCh37	7	116411964	116411965	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0060707-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			290	98	718	0	ENST00000397752.3:c.2950dup	p.Val984GlyfsTer16	p.V984Gfs*16	ENST00000397752	NM_000245.2	983	-/G																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342946	118342946	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060707-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	18	555	0	ENST00000534358.1:c.1072G>C	p.Val358Leu	p.V358L	ENST00000534358	NM_005933.3	358	Gtt/Ctt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295726	1295726	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0060707-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			291	21	789	0				ENST00000310581	NM_198253.2																																																																																	
ARID1A	8289	MSKCC	GRCh37	1	27057936	27057937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1415146710		P-0062873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	137	1007	1	ENST00000324856.7:c.1650dup	p.Tyr551LeufsTer72	p.Y551Lfs*72	ENST00000324856	NM_006015.4	548	-/C																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154872	2154872	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	154	856	0	ENST00000434045.2:c.349C>A	p.Arg117Ser	p.R117S	ENST00000434045	NM_001127598.1	117	Cgt/Agt																																																																															
MAX	4149	MSKCC	GRCh37	14	65543274	65543274	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201312694		P-0062873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	131	711	1	ENST00000358664.4:c.403G>A	p.Asp135Asn	p.D135N	ENST00000358664	NM_002382.4	135	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0062931-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	225	686	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56480354	56480354	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062931-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	133	574	0	ENST00000267101.3:c.461A>G	p.Lys154Arg	p.K154R	ENST00000267101	NM_001982.3	154	aAg/aGg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105592	11105592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062931-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	62	666	0	ENST00000344626.4:c.1508C>T	p.Ala503Val	p.A503V	ENST00000344626	NM_003072.3	503	gCa/gTa																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792915	33792915	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062931-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	74	381	0	ENST00000498907.2:c.406G>T	p.Ala136Ser	p.A136S	ENST00000498907	NM_004364.3	136	Gcc/Tcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0062932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	97	571	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0062932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	120	888	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653782	89653782	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G	rs886041877		P-0062932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	54	308	0	ENST00000371953.3:c.80A>G	p.Tyr27Cys	p.Y27C	ENST00000371953	NM_000314.4	27	tAt/tGt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117679007	117679007	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0062932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	79	377	0	ENST00000368508.3:c.3814A>C	p.Asn1272His	p.N1272H	ENST00000368508	NM_002944.2	1272	Aat/Cat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151880113	151880114	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0062932-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	103	475	0	ENST00000262189.6:c.5210_5211del	p.Lys1737ArgfsTer11	p.K1737Rfs*11	ENST00000262189	NM_170606.2	1737	aAA/a																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845890	156845890	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750477154		P-0062933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1270	115	818	0	ENST00000524377.1:c.1520G>A	p.Arg507His	p.R507H	ENST00000524377	NM_002529.3	507	cGc/cAc																																																																															
HRAS	3265	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28933406		P-0062933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	462	724	2	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061124	38061201	+	protein_altering_variant	In_Frame_Del	DEL	CCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCT	CCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCT	GAA			P-0062933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			766	317	627	2	ENST00000250448.2:c.788_865delinsTTC	p.Gln263_Gly289delinsLeuArg	p.Q263_G289delinsLR	ENST00000250448	NM_004496.3	263	cAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGgc/cTTCgc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0062933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	380	498	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587782082		P-0062933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	275	516	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936697	49936697	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0062933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	349	629	0	ENST00000296474.3:c.1231-1G>T		p.X411_splice	ENST00000296474	NM_002447.2	411																																																																																
FOXP1	27086	MSKCC	GRCh37	3	71247492	71247492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	103	471	0	ENST00000318789.4:c.41C>T	p.Ser14Leu	p.S14L	ENST00000318789	NM_032682.5	14	tCa/tTa																																																																															
APC	324	MSKCC	GRCh37	5	112174604	112174604	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768454793		P-0062933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			951	95	553	0	ENST00000257430.4:c.3313C>T	p.Arg1105Trp	p.R1105W	ENST00000257430	NM_000038.5	1105	Cgg/Tgg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176665388	176665388	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062933-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			844	181	543	0	ENST00000439151.2:c.4072C>T	p.Gln1358Ter	p.Q1358*	ENST00000439151	NM_022455.4	1358	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115955	8115956	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0052439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			772	480	622	0	ENST00000346208.3:c.1305dup	p.Ser436LeufsTer71	p.S436Lfs*71	ENST00000346208		434	cac/caCc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830695	72830695	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			729	253	549	0	ENST00000268489.5:c.5886G>C	p.Glu1962Asp	p.E1962D	ENST00000268489	NM_006885.3	1962	gaG/gaC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0052439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			716	681	349	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772013	135772013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	567	653	0	ENST00000298552.3:c.3104G>T	p.Gly1035Val	p.G1035V	ENST00000298552	NM_001162426.1	1035	gGt/gTt																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650445	48650445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			816	296	701	0	ENST00000376670.3:c.415G>A	p.Glu139Lys	p.E139K	ENST00000376670	NM_002049.3	139	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519936		P-0061952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	136	491	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																																																															
RARA	5914	MSKCC	GRCh37	17	38510573	38510573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1051	69	461	0	ENST00000254066.5:c.827G>A	p.Arg276Gln	p.R276Q	ENST00000254066	NM_000964.3	276	cGg/cAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3801726	3801726	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs587783483		P-0061952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	73	440	0	ENST00000262367.5:c.3779+1G>A		p.X1260_splice	ENST00000262367	NM_004380.2	1260																																																																																
PALB2	79728	MSKCC	GRCh37	16	23619279	23619279	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs587776527		P-0061952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	99	412	0	ENST00000261584.4:c.3256C>T	p.Arg1086Ter	p.R1086*	ENST00000261584	NM_024675.3	1086	Cga/Tga																																																																															
POLD1	5424	MSKCC	GRCh37	19	50920347	50920347	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs201139477		P-0061952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	148	520	0	ENST00000440232.2:c.3113A>G	p.Gln1038Arg	p.Q1038R	ENST00000440232	NM_002691.3	1038	cAg/cGg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753387	57753387	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0061952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	155	447	0	ENST00000274289.3:c.737A>C	p.Tyr246Ser	p.Y246S	ENST00000274289	NM_006622.3	246	tAt/tCt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048658	180048658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753863393		P-0061952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	152	649	0	ENST00000261937.6:c.1904C>T	p.Thr635Met	p.T635M	ENST00000261937	NM_182925.4	635	aCg/aTg																																																																															
ABL1	25	MSKCC	GRCh37	9	133738165	133738165	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1174294624		P-0061952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	65	416	0	ENST00000318560.5:c.565G>A	p.Glu189Lys	p.E189K	ENST00000318560	NM_005157.4	189	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0062288-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	129	291	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51514666	51514666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062288-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			610	69	556	0	ENST00000260433.2:c.508A>G	p.Thr170Ala	p.T170A	ENST00000260433		170	Aca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1060501195		P-0062288-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			435	148	566	0	ENST00000269305.4:c.313G>C	p.Gly105Arg	p.G105R	ENST00000269305	NM_001126112.2	105	Ggc/Cgc																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22142619	22142619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062288-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	41	361	0	ENST00000215832.6:c.783G>T	p.Arg261Ser	p.R261S	ENST00000215832	NM_002745.4	261	agG/agT																																																																															
EP300	2033	MSKCC	GRCh37	22	41564807	41564807	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062288-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			638	78	545	0	ENST00000263253.7:c.4108G>C	p.Asp1370His	p.D1370H	ENST00000263253	NM_001429.3	1370	Gac/Cac																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125356	47125356	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0062288-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			574	146	587	0	ENST00000409792.3:c.5914G>T	p.Glu1972Ter	p.E1972*	ENST00000409792	NM_014159.6	1972	Gaa/Taa																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665213	138665213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062288-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			414	58	515	0	ENST00000330315.3:c.352G>A	p.Glu118Lys	p.E118K	ENST00000330315	NM_023067.3	118	Gag/Aag																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749470	41749470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062288-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			271	45	328	0	ENST00000226382.2:c.325C>A	p.Gln109Lys	p.Q109K	ENST00000226382	NM_003924.3	109	Cag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112176624	112176624	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs952662066		P-0062288-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			592	150	501	0	ENST00000257430.4:c.5333C>T	p.Pro1778Leu	p.P1778L	ENST00000257430	NM_000038.5	1778	cCt/cTt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662440	117662440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062288-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			675	73	459	0	ENST00000368508.3:c.4937C>T	p.Thr1646Ile	p.T1646I	ENST00000368508	NM_002944.2	1646	aCa/aTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507420	8507420	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062288-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			728	70	461	0	ENST00000356435.5:c.1558C>G	p.Leu520Val	p.L520V	ENST00000356435		520	Cta/Gta																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974732	21974732	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs878853650		P-0062288-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			527	200	612	0	ENST00000304494.5:c.95T>C	p.Leu32Pro	p.L32P	ENST00000304494	NM_000077.4	32	cTg/cCg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932729	39932729	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062288-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			496	110	654	1	ENST00000378444.4:c.1870C>A	p.Pro624Thr	p.P624T	ENST00000378444	NM_001123385.1	624	Ccg/Acg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041242	47041242	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062288-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			548	145	626	0	ENST00000329236.7:c.1438del	p.Gln480ArgfsTer146	p.Q480Rfs*146	ENST00000329236	NM_001204466.1	479	gCc/gc																																																																															
AR	367	MSKCC	GRCh37	X	66765957	66765957	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062288-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			530	39	573	0	ENST00000374690.3:c.969G>C	p.Glu323Asp	p.E323D	ENST00000374690	NM_000044.3	323	gaG/gaC																																																																															
AR	367	MSKCC	GRCh37	X	66931304	66931304	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062288-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			661	75	574	0	ENST00000374690.3:c.1946C>G	p.Thr649Ser	p.T649S	ENST00000374690	NM_000044.3	649	aCc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs757274881		P-0062914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	98	1022	0	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0062914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	59	503	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696747	47696747	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0062914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	74	589	0	ENST00000347630.2:c.201G>C	p.Trp67Cys	p.W67C	ENST00000347630	NM_001007230.1	67	tgG/tgC																																																																															
SETD2	29072	MSKCC	GRCh37	3	47108598	47108598	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	67	312	0	ENST00000409792.3:c.6071G>C	p.Arg2024Pro	p.R2024P	ENST00000409792	NM_014159.6	2024	cGa/cCa																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430303	181430303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062920-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	75	435	0	ENST00000325404.1:c.155C>T	p.Ser52Phe	p.S52F	ENST00000325404	NM_003106.3	52	tCc/tTc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061238	38061239	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGAGTCCGGGTGCAGCGTCCAGTA			P-0062920-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			732	216	783	0	ENST00000250448.2:c.727_750dup	p.Tyr243_Ser250dup	p.Y243_S250dup	ENST00000250448	NM_004496.3	243	-/TACTGGACGCTGCACCCGGACTCC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929161	32929162	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0062920-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	13	558	0	ENST00000380152.3:c.7177dup	p.Met2393AsnfsTer19	p.M2393Nfs*19	ENST00000380152		2391	gaa/gAaa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033492	48033492	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs972387746		P-0062920-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	35	643	0	ENST00000234420.5:c.3796C>T	p.His1266Tyr	p.H1266Y	ENST00000234420	NM_000179.2	1266	Cat/Tat																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44920663	44920663	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0062920-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			52	50	166	0	ENST00000377967.4:c.1424del	p.Gln475ArgfsTer13	p.Q475Rfs*13	ENST00000377967	NM_021140.2	475	cAg/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0062922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	220	586	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0062922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	102	622	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0062922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	89	591	1	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119041	70119041	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0062922-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	299	828	0	ENST00000245479.2:c.613A>T	p.Lys205Ter	p.K205*	ENST00000245479	NM_000346.3	205	Aag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0062923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	147	781	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0062923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			688	114	721	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044472	47044472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	99	711	0	ENST00000329236.7:c.1735C>T	p.Arg579Cys	p.R579C	ENST00000329236	NM_001204466.1	579	Cgc/Tgc																																																																															
WT1	7490	MSKCC	GRCh37	11	32414250	32414250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121907901		P-0062923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			781	45	661	0	ENST00000332351.3:c.1301G>A	p.Arg434His	p.R434H	ENST00000332351	NM_024426.4	434	cGt/cAt																																																																															
WT1	7490	MSKCC	GRCh37	11	32449580	32449580	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062923-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	33	649	0	ENST00000332351.3:c.794C>G	p.Pro265Arg	p.P265R	ENST00000332351	NM_024426.4	265	cCc/cGc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0053648-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			501	93	352	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053648-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			775	155	662	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0053648-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	129	499	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0053648-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			349	53	293	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0055424-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			115	24	664	2	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0055424-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			101	13	303	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055424-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			186	21	749	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
MGA	23269	MSKCC	GRCh37	15	42042539	42042539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055424-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			176	47	615	2	ENST00000219905.7:c.6734G>A	p.Ser2245Asn	p.S2245N	ENST00000219905	NM_001164273.1	2245	aGt/aAt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266709	198266709	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0061022-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	193	478	0	ENST00000335508.6:c.2223G>C	p.Lys741Asn	p.K741N	ENST00000335508	NM_012433.2	741	aaG/aaC																																																																															
ATM	472	MSKCC	GRCh37	11	108188140	108188140	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587779855		P-0061022-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			150	295	372	0	ENST00000278616.4:c.6239A>G	p.Tyr2080Cys	p.Y2080C	ENST00000278616	NM_000051.3	2080	tAt/tGt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156837937	156837937	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141021604		P-0061022-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1126	165	766	0	ENST00000524377.1:c.470G>A	p.Arg157His	p.R157H	ENST00000524377	NM_002529.3	157	cGc/cAc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371613	225371613	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061022-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			283	139	443	0	ENST00000264414.4:c.991G>T	p.Glu331Ter	p.E331*	ENST00000264414	NM_003590.4	331	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0061022-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			184	119	322	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912617	32912617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061022-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	86	456	0	ENST00000380152.3:c.4127del	p.Gly1376GlufsTer12	p.G1376Efs*12	ENST00000380152		1375	gaG/ga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145719	11145719	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061022-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			458	296	823	0	ENST00000344626.4:c.4081G>T	p.Glu1361Ter	p.E1361*	ENST00000344626	NM_003072.3	1361	Gag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528615	89528615	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061022-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			665	188	461	0	ENST00000336596.2:c.2915T>C	p.Leu972Pro	p.L972P	ENST00000336596	NM_005233.5	972	cTa/cCa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149450084	149450084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061022-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			575	149	681	0	ENST00000286301.3:c.1133G>T	p.Arg378Leu	p.R378L	ENST00000286301	NM_005211.3	378	cGc/cTc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444377	50444377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061022-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			663	317	704	0	ENST00000331340.3:c.307G>T	p.Ala103Ser	p.A103S	ENST00000331340	NM_006060.4	103	Gct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			219	312	851	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			239	252	792	1	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911278	29911278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			376	130	684	0	ENST00000376809.5:c.577C>T	p.Arg193Cys	p.R193C	ENST00000376809	NM_002116.7	193	Cgc/Tgc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209358	98209358	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1297685477		P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			431	112	679	0	ENST00000331920.6:c.4180C>T	p.Arg1394Ter	p.R1394*	ENST00000331920	NM_000264.3	1394	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			221	175	358	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105721	27105721	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			387	199	675	0	ENST00000324856.7:c.5332G>T	p.Glu1778Ter	p.E1778*	ENST00000324856	NM_006015.4	1778	Gaa/Taa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117641046	117641046	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			292	124	555	0	ENST00000368508.3:c.5925C>G	p.Ile1975Met	p.I1975M	ENST00000368508	NM_002944.2	1975	atC/atG																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026281	48026281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			318	217	628	0	ENST00000234420.5:c.1159G>T	p.Asp387Tyr	p.D387Y	ENST00000234420	NM_000179.2	387	Gat/Tat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910680	32910680	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			202	233	548	0	ENST00000380152.3:c.2188A>T	p.Lys730Ter	p.K730*	ENST00000380152		730	Aaa/Taa																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589827	69589827	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			668	307	1204	0	ENST00000168712.1:c.26T>A	p.Val9Glu	p.V9E	ENST00000168712	NM_002007.2	9	gTa/gAa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939784	71939784	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			775	131	758	1	ENST00000298229.2:c.411G>C	p.Glu137Asp	p.E137D	ENST00000298229	NM_001567.3	137	gaG/gaC																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877353	28877353	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			235	221	556	0	ENST00000282397.4:c.3968C>A	p.Pro1323Gln	p.P1323Q	ENST00000282397	NM_002019.4	1323	cCg/cAg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610121	81610121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	118	748	0	ENST00000298171.2:c.1719C>A	p.Asp573Glu	p.D573E	ENST00000298171	NM_000369.2	573	gaC/gaA																																																																															
MGA	23269	MSKCC	GRCh37	15	42054049	42054049	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			130	117	358	0	ENST00000219905.7:c.7510+1G>A		p.X2504_splice	ENST00000219905	NM_001164273.1	2504																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9923360	9923360	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			303	200	626	0	ENST00000330684.3:c.1927G>T	p.Ala643Ser	p.A643S	ENST00000330684	NM_001134407.1	643	Gct/Tct																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39644771	39644771	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			149	133	390	0	ENST00000262039.4:c.2500G>C	p.Glu834Gln	p.E834Q	ENST00000262039	NM_002647.2	834	Gaa/Caa																																																																															
REL	5966	MSKCC	GRCh37	2	61145406	61145406	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			350	76	370	0	ENST00000295025.8:c.616C>G	p.Leu206Val	p.L206V	ENST00000295025	NM_002908.2	206	Cta/Gta																																																																															
BARD1	580	MSKCC	GRCh37	2	215610559	215610559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			345	215	463	0	ENST00000260947.4:c.1697G>A	p.Arg566Lys	p.R566K	ENST00000260947	NM_000465.2	566	aGg/aAg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660940	227660940	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	180	729	0	ENST00000305123.5:c.2515C>A	p.Pro839Thr	p.P839T	ENST00000305123	NM_005544.2	839	Ccc/Acc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125288	47125288	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			202	257	586	0	ENST00000409792.3:c.5982G>C	p.Arg1994Ser	p.R1994S	ENST00000409792	NM_014159.6	1994	agG/agC																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940798	49940798	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			234	290	754	0	ENST00000296474.3:c.245G>T	p.Gly82Val	p.G82V	ENST00000296474	NM_002447.2	82	gGg/gTg																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197450	26197450	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			526	150	866	0	ENST00000356476.2:c.29A>G	p.Lys10Arg	p.K10R	ENST00000356476		10	aAg/aGg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910371	29910371	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			508	154	905	0	ENST00000376809.5:c.41C>G	p.Ser14Trp	p.S14W	ENST00000376809	NM_002116.7	14	tCg/tGg																																																																															
BRAF	673	MSKCC	GRCh37	7	140534575	140534575	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			474	232	570	0	ENST00000288602.6:c.338G>C	p.Ser113Thr	p.S113T	ENST00000288602	NM_004333.4	113	aGc/aCc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421847	49421848	+	frameshift_variant	Frame_Shift_Ins	INS	TG	TG	ATA			P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			350	128	804	1	ENST00000301067.7:c.14459_14460delinsTAT	p.Pro4820LeufsTer2	p.P4820Lfs*2	ENST00000301067	NM_003482.3	4820	cCA/cTAT																																																																															
IL10	3586	MSKCC	GRCh37	1	206944206	206944258	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTATTTTGGGGGCAGCTGCAAGGGAAAAAACTGATCTGCTACTTACACAGCGC	GTATTTTGGGGGCAGCTGCAAGGGAAAAAACTGATCTGCTACTTACACAGCGC	CA			P-0062117-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			417	93	496	0	ENST00000423557.1:c.372_378+46delinsTG		p.X124_splice	ENST00000423557	NM_000572.2	124																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0062602-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			539	576	491	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259439	55259439	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs397517126		P-0062602-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			515	479	447	0	ENST00000275493.2:c.2497T>G	p.Leu833Val	p.L833V	ENST00000275493	NM_005228.3	833	Ttg/Gtg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs45476696		P-0062602-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			703	376	600	0	ENST00000304494.5:c.457G>A	p.Asp153Asn	p.D153N	ENST00000304494	NM_000077.4	153	Gac/Aac																																																																															
ATR	545	MSKCC	GRCh37	3	142222283	142222283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062602-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			256	65	208	0	ENST00000350721.4:c.5209C>T	p.His1737Tyr	p.H1737Y	ENST00000350721	NM_001184.3	1737	Cat/Tat																																																																															
RB1	5925	MSKCC	GRCh37	13	48955465	48955465	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0062602-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	109	181	0	ENST00000267163.4:c.1585del	p.Tyr529ThrfsTer3	p.Y529Tfs*3	ENST00000267163	NM_000321.2	527	gaT/ga																																																																															
MED12	9968	MSKCC	GRCh37	X	70361119	70361119	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062602-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			701	209	767	0	ENST00000374080.3:c.6307C>T	p.Gln2103Ter	p.Q2103*	ENST00000374080		2103	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0062605-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			114	32	300	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431942	49431943	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0062605-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			395	149	652	1	ENST00000301067.7:c.9196_9197del	p.Phe3066GlnfsTer2	p.F3066Qfs*2	ENST00000301067	NM_003482.3	3066	TTc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0062605-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			274	110	654	0	ENST00000269305.4:c.915dup	p.Arg306AlafsTer31	p.R306Afs*31	ENST00000269305	NM_001126112.2	305	-/G																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618715	37618716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0062755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	26	787	1	ENST00000447079.4:c.397dup	p.Ser133LysfsTer24	p.S133Kfs*24	ENST00000447079	NM_015083.1	131	gaa/gAaa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515369	149515369	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754766440		P-0062755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	36	759	1	ENST00000261799.4:c.113C>T	p.Pro38Leu	p.P38L	ENST00000261799	NM_002609.3	38	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0062784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	167	301	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0062784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	406	582	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733279	40733279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201275244		P-0062784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			776	363	590	0	ENST00000373198.4:c.3527G>A	p.Arg1176His	p.R1176H	ENST00000373198	NM_133170.3	1176	cGt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0062784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	346	488	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112163696	112163697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0062784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	192	297	0	ENST00000257430.4:c.1620dup	p.Gln541ThrfsTer19	p.Q541Tfs*19	ENST00000257430	NM_000038.5	540	tta/ttAa																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0062784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	293	473	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739761	41739762	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCT			P-0062784-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	266	593	0	ENST00000242208.4:c.209_211dup	p.Lys70dup	p.K70dup	ENST00000242208	NM_002192.2	70	aga/aAGAga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579419	7579420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0062788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	68	730	0	ENST00000269305.4:c.267dup	p.Ser90LeufsTer59	p.S90Lfs*59	ENST00000269305	NM_001126112.2	89	-/C																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891137	101891137	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0062788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	40	323	0	ENST00000374994.4:c.98C>T	p.Ala33Val	p.A33V	ENST00000374994	NM_004612.2	33	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0062788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	62	300	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0062801-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	152	358	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589813	28589813	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062801-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	622	514	2	ENST00000241453.7:c.2567C>G	p.Ala856Gly	p.A856G	ENST00000241453	NM_004119.2	856	gCc/gGc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639986	3639986	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062801-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			958	161	754	0	ENST00000294008.3:c.3653A>G	p.Asp1218Gly	p.D1218G	ENST00000294008	NM_032444.2	1218	gAt/gGt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857020	9857020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062801-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	60	391	0	ENST00000330684.3:c.4381G>A	p.Glu1461Lys	p.E1461K	ENST00000330684	NM_001134407.1	1461	Gaa/Aaa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23614790	23614790	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062801-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	66	319	0	ENST00000261584.4:c.3551A>G	p.His1184Arg	p.H1184R	ENST00000261584	NM_024675.3	1184	cAc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577516	7577527	+	inframe_deletion	In_Frame_Del	DEL	GATGATGGTGAG	GATGATGGTGAG	-			P-0062801-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	271	610	0	ENST00000269305.4:c.754_765del	p.Leu252_Ile255del	p.L252_I255del	ENST00000269305	NM_001126112.2	252	CTCACCATCATC/-																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5260824	5260824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774744361		P-0062801-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	121	579	0	ENST00000357368.4:c.587C>T	p.Pro196Leu	p.P196L	ENST00000357368	NM_002850.3	196	cCg/cTg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957566	1957566	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062801-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	70	550	0	ENST00000382895.3:c.2665G>C	p.Gly889Arg	p.G889R	ENST00000382895	NM_133330.2	889	Ggg/Cgg																																																																															
SMO	6608	MSKCC	GRCh37	7	128852215	128852215	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs765830913		P-0062801-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1152	189	791	0	ENST00000249373.3:c.2287C>T	p.Arg763Ter	p.R763*	ENST00000249373	NM_005631.4	763	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0062803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	408	860	2	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
APC	324	MSKCC	GRCh37	5	112175561	112175561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	115	668	1	ENST00000257430.4:c.4271del	p.Pro1424GlnfsTer49	p.P1424Qfs*49	ENST00000257430	NM_000038.5	1424	Cca/ca																																																																															
AXL	558	MSKCC	GRCh37	19	41743988	41743988	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776310618		P-0062803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	222	871	0	ENST00000301178.4:c.923G>A	p.Arg308His	p.R308H	ENST00000301178	NM_021913.4	308	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604668	48604668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	146	573	0	ENST00000342988.3:c.1490G>A	p.Arg497His	p.R497H	ENST00000342988	NM_005359.5	497	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0062803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	84	365	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005338	150005338	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	189	763	0	ENST00000253339.5:c.887G>A	p.Trp296Ter	p.W296*	ENST00000253339		296	tGg/tAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945574	151945574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			31	58	81	0	ENST00000262189.6:c.1945G>A	p.Val649Met	p.V649M	ENST00000262189	NM_170606.2	649	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0062807-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	63	438	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120114	70120115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGTGC			P-0062807-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			930	351	744	1	ENST00000245479.2:c.1117_1118insGTGCC	p.Pro373ArgfsTer12	p.P373Rfs*12	ENST00000245479	NM_000346.3	372	-/CGTGC																																																																															
CASP8	841	MSKCC	GRCh37	2	202131240	202131240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062807-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			812	165	527	4	ENST00000358485.4:c.208G>T	p.Gly70Trp	p.G70W	ENST00000358485	NM_001080125.1	70	Ggg/Tgg																																																																															
CASP8	841	MSKCC	GRCh37	2	202131267	202131267	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062807-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			905	175	593	4	ENST00000358485.4:c.235G>T	p.Ala79Ser	p.A79S	ENST00000358485	NM_001080125.1	79	Gcc/Tcc																																																																															
APC	324	MSKCC	GRCh37	5	112175340	112175342	+	frameshift_variant	Frame_Shift_Del	DEL	AAG	AAG	T			P-0062807-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			852	94	537	0	ENST00000257430.4:c.4049_4051delinsT	p.Lys1350IlefsTer3	p.K1350Ifs*3	ENST00000257430	NM_000038.5	1350	aAAGct/aTct																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581282	48581283	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	C			P-0062807-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			848	56	642	0	ENST00000342988.3:c.586_587delinsC	p.Ser196ProfsTer6	p.S196Pfs*6	ENST00000342988	NM_005359.5	196	AGc/Cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0062810-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	111	850	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591931	48591931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062810-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	87	584	0	ENST00000342988.3:c.1094G>A	p.Gly365Asp	p.G365D	ENST00000342988	NM_005359.5	365	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0062810-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	48	362	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858047	152858047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062810-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	81	709	0	ENST00000406277.2:c.568G>A	p.Ala190Thr	p.A190T	ENST00000406277	NM_152274.4	190	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs483352695		P-0062813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	114	563	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0062813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	57	363	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25362797	25362798	+	3_prime_UTR_variant	3'UTR	DEL	TA	TA	-			P-0062838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	15	274	0	ENST00000256078.4:c.*52_*53del			ENST00000256078	NM_033360.2																																																																																	
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0062838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	54	330	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913407		P-0062838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	141	489	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																															
MTAP	4507	MSKCC	GRCh37	9	21816752	21816752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			52	90	238	0	ENST00000380172.4:c.160G>A	p.Asp54Asn	p.D54N	ENST00000380172	NM_002451.3	54	Gat/Aat																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932018	39932018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367736022		P-0062838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	142	556	0	ENST00000378444.4:c.2581C>T	p.Arg861Cys	p.R861C	ENST00000378444	NM_001123385.1	861	Cgc/Tgc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039278	47039278	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0062838-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	138	655	0	ENST00000329236.7:c.671-1G>A		p.X224_splice	ENST00000329236	NM_001204466.1	224																																																																																
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0062839-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	38	706	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027316	48027316	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63751127		P-0062839-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	42	584	0	ENST00000234420.5:c.2194C>T	p.Arg732Ter	p.R732*	ENST00000234420	NM_000179.2	732	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0062839-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	54	320	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0062842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			723	158	546	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578535	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0062842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	152	650	0	ENST00000269305.4:c.395dup	p.Met133AspfsTer16	p.M133Dfs*16	ENST00000269305	NM_001126112.2	132	aag/aaAg																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0062842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	175	507	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32899248	32899248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375125172		P-0062842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	54	334	0	ENST00000380152.3:c.352C>T	p.Arg118Cys	p.R118C	ENST00000380152		118	Cgc/Tgc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117866533	117866533	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0062842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	73	402	0	ENST00000297338.2:c.1112A>C	p.Lys371Thr	p.K371T	ENST00000297338	NM_006265.2	371	aAa/aCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0062842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	31	337	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992181	72992181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062842-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1020	57	751	0	ENST00000268489.5:c.1864C>T	p.His622Tyr	p.H622Y	ENST00000268489	NM_006885.3	622	Cac/Tac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			827	100	915	1	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			760	173	787	0	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508490	106508490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			740	58	585	0	ENST00000359195.3:c.484G>A	p.Val162Ile	p.V162I	ENST00000359195	NM_002649.2	162	Gtc/Atc																																																																															
KDR	3791	MSKCC	GRCh37	4	55956164	55956164	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780209077		P-0062907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	61	489	0	ENST00000263923.4:c.3151C>T	p.Arg1051Trp	p.R1051W	ENST00000263923	NM_002253.2	1051	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112154907	112154907	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs1114167545		P-0062907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	230	646	0	ENST00000257430.4:c.1178C>G	p.Ser393Ter	p.S393*	ENST00000257430	NM_000038.5	393	tCa/tGa																																																																															
APC	324	MSKCC	GRCh37	5	112175925	112175925	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0062907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	267	486	0	ENST00000257430.4:c.4634C>A	p.Ser1545Ter	p.S1545*	ENST00000257430	NM_000038.5	1545	tCa/tAa																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7989346	7989346	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397514526		P-0062907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	155	660	0	ENST00000319144.4:c.340C>T	p.Arg114Trp	p.R114W	ENST00000319144	NM_001139.2	114	Cgg/Tgg																																																																															
MGA	23269	MSKCC	GRCh37	15	42003509	42003509	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			711	137	531	1	ENST00000219905.7:c.3046C>T	p.Arg1016Ter	p.R1016*	ENST00000219905	NM_001164273.1	1016	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0062907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	88	364	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131691026		P-0062908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			835	142	785	4	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0062908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	119	622	3	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119875	70119875	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0062908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			732	108	754	1	ENST00000245479.2:c.877G>T	p.Glu293Ter	p.E293*	ENST00000245479	NM_000346.3	293	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0062909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	361	855	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448600	89448600	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759973751		P-0062909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	352	688	0	ENST00000336596.2:c.1564C>T	p.Arg522Cys	p.R522C	ENST00000336596	NM_005233.5	522	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211624	36211624	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs574808075		P-0062909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	266	629	0	ENST00000222270.7:c.1375C>T	p.Pro459Ser	p.P459S	ENST00000222270	NM_014727.1	459	Cct/Tct																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597400	10597401	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0062909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	265	630	0	ENST00000171111.5:c.1802_1803delinsTT	p.Arg601Leu	p.R601L	ENST00000171111	NM_203500.1	601	cGG/cTT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0062909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	482	395	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073636	8073637	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0062909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	212	722	0	ENST00000377482.5:c.1022dup	p.Tyr341Ter	p.Y341*	ENST00000377482	NM_018948.3	341	tac/taAc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465031	120465031	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	148	559	0	ENST00000256646.2:c.5041C>A	p.Leu1681Ile	p.L1681I	ENST00000256646	NM_024408.3	1681	Ctc/Atc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949104	71949104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			799	346	859	0	ENST00000298229.2:c.3573del	p.Arg1192GlyfsTer10	p.R1192Gfs*10	ENST00000298229	NM_001567.3	1191	Ggg/gg																																																																															
YAP1	10413	MSKCC	GRCh37	11	101984911	101984911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	439	472	0	ENST00000282441.5:c.358C>T	p.Pro120Ser	p.P120S	ENST00000282441	NM_001130145.2	120	Cca/Tca																																																																															
NUP93	9688	MSKCC	GRCh37	16	56864565	56864565	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	128	576	0	ENST00000308159.5:c.1053G>T	p.Trp351Cys	p.W351C	ENST00000308159	NM_014669.4	351	tgG/tgT																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308048	30308048	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	277	535	0	ENST00000262643.3:c.187del	p.Asp63ThrfsTer12	p.D63Tfs*12	ENST00000262643	NM_001238.2	62	tGg/tg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959043	2959044	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0062909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	397	625	0	ENST00000396946.4:c.2472_2473delinsAA	p.Asp824_His825delinsGluAsn	p.D824_H825delinsEN	ENST00000396946	NM_032415.4	824	gaCCat/gaAAat																																																																															
RAC1	5879	MSKCC	GRCh37	7	6438334	6438334	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	259	392	0	ENST00000356142.4:c.267A>C	p.Lys89Asn	p.K89N	ENST00000356142	NM_018890.3	89	aaA/aaC																																																																															
PREX2	80243	MSKCC	GRCh37	8	69000045	69000045	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0062909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	233	551	0	ENST00000288368.4:c.2113+1G>T		p.X705_splice	ENST00000288368	NM_024870.2	705																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8518148	8518148	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062909-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1308	269	564	0	ENST00000356435.5:c.1243C>G	p.Gln415Glu	p.Q415E	ENST00000356435		415	Caa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0062910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	21	502	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18280037	18280037	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772782368		P-0062910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	27	513	0	ENST00000222254.8:c.2120C>T	p.Ala707Val	p.A707V	ENST00000222254	NM_005027.3	707	gCg/gTg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	464381	464381	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	34	425	0	ENST00000399788.2:c.813del	p.Arg271SerfsTer9	p.R271Sfs*9	ENST00000399788	NM_001042603.1	271	agG/ag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18443794	18443794	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	38	390	0	ENST00000266497.5:c.767G>T	p.Arg256Ile	p.R256I	ENST00000266497		256	aGa/aTa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18719923	18719923	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	43	360	0	ENST00000266497.5:c.3820C>A	p.His1274Asn	p.H1274N	ENST00000266497		1274	Cac/Aac																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233280	46233280	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0062910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	53	462	0	ENST00000334344.6:c.1498+1G>T		p.X500_splice	ENST00000334344	NM_152641.2	500																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36217171	36217171	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	99	505	0	ENST00000222270.7:c.3920G>T	p.Gly1307Val	p.G1307V	ENST00000222270	NM_014727.1	1307	gGg/gTg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47440666	47440666	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0062910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	67	336	0	ENST00000404338.3:c.3826+1G>T		p.X1276_splice	ENST00000404338	NM_004491.4	1276																																																																																
ASXL2	55252	MSKCC	GRCh37	2	25965136	25965136	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	31	610	0	ENST00000435504.4:c.4070T>A	p.Val1357Asp	p.V1357D	ENST00000435504		1357	gTc/gAc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250463	110250463	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	37	537	0	ENST00000374672.4:c.212C>A	p.Ala71Asp	p.A71D	ENST00000374672	NM_004235.4	71	gCc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			758	164	320	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579336	7579336	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			537	69	205	0	ENST00000269305.4:c.351del	p.Thr118GlnfsTer5	p.T118Qfs*5	ENST00000269305	NM_001126112.2	117	ggG/gg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156837985	156837985	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			603	104	258	0	ENST00000524377.1:c.518A>T	p.Gln173Leu	p.Q173L	ENST00000524377	NM_002529.3	173	cAg/cTg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176085798	176085798	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1027	70	327	0	ENST00000367669.3:c.988G>T	p.Glu330Ter	p.E330*	ENST00000367669	NM_022457.5	330	Gaa/Taa																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119666120	119666120	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			700	152	345	0	ENST00000316626.5:c.361G>T	p.Glu121Ter	p.E121*	ENST00000316626		121	Gag/Tag																																																																															
ATR	545	MSKCC	GRCh37	3	142212048	142212048	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			822	92	405	0	ENST00000350721.4:c.6004G>T	p.Ala2002Ser	p.A2002S	ENST00000350721	NM_001184.3	2002	Gct/Tct																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043483	180043483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			407	46	161	0	ENST00000261937.6:c.3103C>A	p.His1035Asn	p.H1035N	ENST00000261937	NM_182925.4	1035	Cac/Aac																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047947	180047947	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			546	41	258	0	ENST00000261937.6:c.2228C>A	p.Ala743Glu	p.A743E	ENST00000261937	NM_182925.4	743	gCg/gAg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332804	152332804	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			759	83	455	0	ENST00000206249.3:c.1110G>T	p.Leu370Phe	p.L370F	ENST00000206249	NM_000125.3	370	ttG/ttT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509012	106509012	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	137	193	0	ENST00000359195.3:c.1006C>A	p.His336Asn	p.H336N	ENST00000359195	NM_002649.2	336	Cat/Aat																																																																															
JAK2	3717	MSKCC	GRCh37	9	5078436	5078436	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	122	233	0	ENST00000381652.3:c.2123C>A	p.Pro708Gln	p.P708Q	ENST00000381652	NM_004972.3	708	cCa/cAa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396757	139396757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	50	165	0	ENST00000277541.6:c.5351G>T	p.Arg1784Leu	p.R1784L	ENST00000277541	NM_017617.3	1784	cGg/cTg																																																																															
ATM	472	MSKCC	GRCh37	11	108121599	108121599	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1037	174	365	0	ENST00000278616.4:c.1407G>C	p.Arg469Ser	p.R469S	ENST00000278616	NM_000051.3	469	agG/agC																																																																															
POLE	5426	MSKCC	GRCh37	12	133225522	133225522	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			735	52	245	1	ENST00000320574.5:c.4142A>G	p.Tyr1381Cys	p.Y1381C	ENST00000320574	NM_006231.2	1381	tAt/tGt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244501	41244501	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			826	254	300	0	ENST00000357654.3:c.3047A>T	p.Asn1016Ile	p.N1016I	ENST00000357654	NM_007294.3	1016	aAt/aTt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291100	10291101	+	missense_variant	Missense_Mutation	DNP	TC	TC	CA			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			635	68	223	0	ENST00000340748.4:c.370_371delinsTG	p.Asp124Cys	p.D124C	ENST00000340748		124	GAt/TGt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602257	10602257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	133	163	0	ENST00000171111.5:c.1321G>T	p.Glu441Ter	p.E441*	ENST00000171111	NM_203500.1	441	Gag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11113812	11113812	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	131	167	0	ENST00000344626.4:c.1920G>T	p.Glu640Asp	p.E640D	ENST00000344626	NM_003072.3	640	gaG/gaT																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52709219	52709219	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1313754779		P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			528	105	205	0	ENST00000322088.6:c.173C>T	p.Thr58Ile	p.T58I	ENST00000322088	NM_014225.5	58	aCc/aTc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561142	9561142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			523	108	346	0	ENST00000353224.5:c.640G>T	p.Asp214Tyr	p.D214Y	ENST00000353224	NM_177990.2	214	Gac/Tac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306615	41306615	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			635	52	329	0	ENST00000373198.4:c.1044del	p.Trp348CysfsTer49	p.W348Cfs*49	ENST00000373198	NM_133170.3	348	tgG/tg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207201	1207203	+	splice_donor_variant,coding_sequence_variant	Splice_Site	ONP	AAG	AAG	GAT			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	75	112	0	ENST00000326873.7:c.289_290+1delinsGAT		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0006280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	203	217	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082299	16082299	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs958489598		P-0006280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	135	214	2	ENST00000281043.3:c.113G>A	p.Gly38Asp	p.G38D	ENST00000281043	NM_005378.4	38	gGc/gAc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793305	242793305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	64	203	0	ENST00000334409.5:c.772G>A	p.Gly258Ser	p.G258S	ENST00000334409	NM_005018.2	258	Ggc/Agc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497225	149497225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	38	206	0	ENST00000261799.4:c.3093G>C	p.Glu1031Asp	p.E1031D	ENST00000261799	NM_002609.3	1031	gaG/gaC																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575491	64575491	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376872829		P-0006280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	88	235	3	ENST00000337652.1:c.541G>A	p.Ala181Thr	p.A181T	ENST00000337652	NM_130803.2	181	Gcc/Acc																																																																															
ATM	472	MSKCC	GRCh37	11	108153445	108153445	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	119	107	1	ENST00000278616.4:c.3585G>T	p.Glu1195Asp	p.E1195D	ENST00000278616	NM_000051.3	1195	gaG/gaT																																																																															
STAG2	10735	MSKCC	GRCh37	X	123205082	123205083	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	278	242	1	ENST00000218089.9:c.2443dup	p.Tyr815LeufsTer4	p.Y815Lfs*4	ENST00000218089	NM_001042749.1	814	-/T																																																																															
RB1	5925	MSKCC	GRCh37	13	48919281	48919282	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	156	146	1	ENST00000267163.4:c.448dup	p.Arg150LysfsTer7	p.R150Kfs*7	ENST00000267163	NM_000321.2	149	tca/tcAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577551	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0006280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	116	203	1	ENST00000269305.4:c.730_731delinsTT	p.Gly244Phe	p.G244F	ENST00000269305	NM_001126112.2	244	GGc/TTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	359	383	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289259	33289260	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	207	431	0	ENST00000374542.5:c.292_293del	p.Leu98ValfsTer13	p.L98Vfs*13	ENST00000374542	NM_001141970.1	98	CTg/g																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736296	243736296	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	369	533	0	ENST00000263826.5:c.751T>A	p.Tyr251Asn	p.Y251N	ENST00000263826	NM_005465.4	251	Tat/Aat																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795120	242795120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1412459900		P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	136	313	0	ENST00000334409.5:c.89G>A	p.Arg30Lys	p.R30K	ENST00000334409	NM_005018.2	30	aGg/aAg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670255	134670255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	609	400	0	ENST00000398015.3:c.166C>A	p.Arg56Ser	p.R56S	ENST00000398015	NM_004441.4	56	Cgc/Agc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851685	134851685	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377348490		P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	603	394	0	ENST00000398015.3:c.1091G>A	p.Arg364Gln	p.R364Q	ENST00000398015	NM_004441.4	364	cGg/cAg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502609	149502609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	203	207	0	ENST00000261799.4:c.2179C>T	p.Pro727Ser	p.P727S	ENST00000261799	NM_002609.3	727	Ccc/Tcc																																																																															
IRF4	3662	MSKCC	GRCh37	6	393209	393209	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	175	435	0	ENST00000380956.4:c.57C>A	p.Cys19Ter	p.C19*	ENST00000380956	NM_001195286.1	19	tgC/tgA																																																																															
DAXX	1616	MSKCC	GRCh37	6	33286823	33286823	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs143737807		P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	342	329	0	ENST00000374542.5:c.2114G>T	p.Arg705Leu	p.R705L	ENST00000374542	NM_001141970.1	705	cGg/cTg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066637	94066637	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	658	709	2	ENST00000369303.4:c.1122G>T	p.Trp374Cys	p.W374C	ENST00000369303	NM_004440.3	374	tgG/tgT																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729690	41729690	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1517	327	669	0	ENST00000242208.4:c.839G>C	p.Gly280Ala	p.G280A	ENST00000242208	NM_002192.2	280	gGa/gCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55087040	55087040	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	211	244	0	ENST00000275493.2:c.70G>T	p.Ala24Ser	p.A24S	ENST00000275493	NM_005228.3	24	Gct/Tct																																																																															
NBN	4683	MSKCC	GRCh37	8	90967783	90967783	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	89	191	0	ENST00000265433.3:c.1125G>T	p.Trp375Cys	p.W375C	ENST00000265433	NM_002485.4	375	tgG/tgT																																																																															
NBN	4683	MSKCC	GRCh37	8	90983459	90983459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	191	328	0	ENST00000265433.3:c.644G>T	p.Arg215Leu	p.R215L	ENST00000265433	NM_002485.4	215	cGg/cTg																																																																															
NBN	4683	MSKCC	GRCh37	8	90995084	90995084	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	168	210	0	ENST00000265433.3:c.38-1G>T		p.X13_splice	ENST00000265433	NM_002485.4	13																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8465608	8465608	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	149	530	0	ENST00000356435.5:c.3572A>G	p.Tyr1191Cys	p.Y1191C	ENST00000356435		1191	tAt/tGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521321	8521321	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	138	342	2	ENST00000356435.5:c.917C>A	p.Ser306Ter	p.S306*	ENST00000356435		306	tCa/tAa																																																																															
RET	5979	MSKCC	GRCh37	10	43602011	43602011	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	273	371	0	ENST00000355710.3:c.1055A>C	p.His352Pro	p.H352P	ENST00000355710	NM_020975.4	352	cAt/cCt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852370	63852370	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	331	435	0	ENST00000279873.7:c.3148G>T	p.Glu1050Ter	p.E1050*	ENST00000279873	NM_032199.2	1050	Gag/Tag																																																																															
IGF2	3481	MSKCC	GRCh37	11	2156635	2156635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	620	569	0	ENST00000434045.2:c.287C>A	p.Thr96Asn	p.T96N	ENST00000434045	NM_001127598.1	96	aCc/aAc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230370	46230370	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	678	322	1	ENST00000334344.6:c.706-2A>T		p.X236_splice	ENST00000334344	NM_152641.2	236																																																																																
LATS2	26524	MSKCC	GRCh37	13	21555662	21555662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	267	509	0	ENST00000382592.4:c.2608G>T	p.Ala870Ser	p.A870S	ENST00000382592	NM_014572.2	870	Gca/Tca																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589378	28589378	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	209	421	0	ENST00000241453.7:c.2669C>A	p.Pro890His	p.P890H	ENST00000241453	NM_004119.2	890	cCt/cAt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28592650	28592650	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	231	644	0	ENST00000241453.7:c.2495T>A	p.Leu832Ter	p.L832*	ENST00000241453	NM_004119.2	832	tTg/tAg																																																																															
MGA	23269	MSKCC	GRCh37	15	42041743	42041743	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	682	758	1	ENST00000219905.7:c.5938G>T	p.Glu1980Ter	p.E1980*	ENST00000219905	NM_001164273.1	1980	Gaa/Taa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483917	88483917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	451	477	0	ENST00000360948.2:c.1653G>T	p.Lys551Asn	p.K551N	ENST00000360948	NM_001012338.2	551	aaG/aaT																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2647685	2647685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	270	539	1	ENST00000342085.4:c.1588G>T	p.Gly530Trp	p.G530W	ENST00000342085	NM_002613.4	530	Ggg/Tgg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857922	9857922	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	368	366	0	ENST00000330684.3:c.3479A>C	p.Lys1160Thr	p.K1160T	ENST00000330684	NM_001134407.1	1160	aAg/aCg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14020435	14020435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	159	322	0	ENST00000311895.7:c.406G>A	p.Ala136Thr	p.A136T	ENST00000311895	NM_005236.2	136	Gcc/Acc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821181	72821181	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	342	575	0	ENST00000268489.5:c.10994A>T	p.Asp3665Val	p.D3665V	ENST00000268489	NM_006885.3	3665	gAc/gTc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998899	11998899	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	108	338	0	ENST00000353533.5:c.401G>T	p.Arg134Leu	p.R134L	ENST00000353533	NM_003010.3	134	cGg/cTg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40379566	40379566	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1663	376	891	0	ENST00000293328.3:c.266A>T	p.His89Leu	p.H89L	ENST00000293328	NM_012448.3	89	cAc/cTc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453366	40453366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	967	744	0	ENST00000345506.4:c.1063C>A	p.Leu355Met	p.L355M	ENST00000345506	NM_003152.3	355	Ctg/Atg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1625631	1625631	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	482	553	0	ENST00000344749.5:c.443A>T	p.Gln148Leu	p.Q148L	ENST00000344749	NM_001136139.2	148	cAg/cTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953337	17953337	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202167678		P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	385	444	0	ENST00000458235.1:c.649G>A	p.Val217Met	p.V217M	ENST00000458235	NM_000215.3	217	Gtg/Atg																																																																															
AXL	558	MSKCC	GRCh37	19	41726687	41726687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	271	504	0	ENST00000301178.4:c.232C>A	p.Leu78Ile	p.L78I	ENST00000301178	NM_021913.4	78	Ctc/Atc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50916773	50916773	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	272	461	1	ENST00000440232.2:c.2245G>T	p.Ala749Ser	p.A749S	ENST00000440232	NM_002691.3	749	Gcc/Tcc																																																																															
SRC	6714	MSKCC	GRCh37	20	36031269	36031269	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	214	427	0	ENST00000358208.4:c.1388G>T	p.Arg463Leu	p.R463L	ENST00000358208		463	cGg/cTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922875	39922875	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1381182530		P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	377	509	0	ENST00000378444.4:c.3833G>C	p.Ser1278Thr	p.S1278T	ENST00000378444	NM_001123385.1	1278	aGt/aCt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39930322	39930322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	446	631	2	ENST00000378444.4:c.3142C>A	p.Pro1048Thr	p.P1048T	ENST00000378444	NM_001123385.1	1048	Cca/Aca																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934052	39934052	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	433	552	0	ENST00000378444.4:c.547G>T	p.Gly183Cys	p.G183C	ENST00000378444	NM_001123385.1	183	Ggt/Tgt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922878	44922878	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs987956112		P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	606	574	0	ENST00000377967.4:c.1739G>T	p.Ser580Ile	p.S580I	ENST00000377967	NM_021140.2	580	aGc/aTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29528126	29528127	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	301	365	0	ENST00000358273.4:c.1135dup	p.Cys379LeufsTer17	p.C379Lfs*17	ENST00000358273	NM_001042492.2	378	-/T																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532710	187532710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1010116749		P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	415	496	0	ENST00000441802.2:c.9683del	p.Pro3228LeufsTer42	p.P3228Lfs*42	ENST00000441802	NM_005245.3	3228	cCt/ct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106670	27106671	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	372	311	1	ENST00000324856.7:c.6281_6282delinsT	p.Cys2094PhefsTer41	p.C2094Ffs*41	ENST00000324856	NM_006015.4	2094	tGC/tT																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94209494	94209495	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	533	473	0	ENST00000323929.3:c.619_620delinsTT	p.Glu207Leu	p.E207L	ENST00000323929	NM_005591.3	207	GAg/TTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	231	248	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	187	637	0	ENST00000244661.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000244661	NM_003537.3	74	Gaa/Caa																																																																															
IL10	3586	MSKCC	GRCh37	1	206944720	206944720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	63	190	0	ENST00000423557.1:c.206C>T	p.Ser69Phe	p.S69F	ENST00000423557	NM_000572.2	69	tCc/tTc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086073	16086073	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	132	223	0	ENST00000281043.3:c.1249G>C	p.Ala417Pro	p.A417P	ENST00000281043	NM_005378.4	417	Gcc/Ccc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89457222	89457222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	115	256	0	ENST00000336596.2:c.1703G>C	p.Cys568Ser	p.C568S	ENST00000336596	NM_005233.5	568	tGt/tCt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956693	93956693	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	200	448	0	ENST00000369303.4:c.2543C>G	p.Ala848Gly	p.A848G	ENST00000369303	NM_004440.3	848	gCa/gGa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852183	63852183	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	69	292	0	ENST00000279873.7:c.2961G>T	p.Arg987Ser	p.R987S	ENST00000279873	NM_032199.2	987	agG/agT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444938	49444938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	104	131	0	ENST00000301067.7:c.2528C>T	p.Ser843Phe	p.S843F	ENST00000301067	NM_003482.3	843	tCc/tTc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117417	115117417	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	96	264	0	ENST00000257566.3:c.757C>A	p.His253Asn	p.H253N	ENST00000257566	NM_016569.3	253	Cac/Aac																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2218080	2218080	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	252	378	1	ENST00000326181.6:c.142G>T	p.Asp48Tyr	p.D48Y	ENST00000326181	NM_032271.2	48	Gac/Tac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733244	40733244	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	39	206	0	ENST00000373198.4:c.3562C>T	p.Gln1188Ter	p.Q1188*	ENST00000373198	NM_133170.3	1188	Cag/Tag																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20153891	20153891	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	62	255	0	ENST00000379607.5:c.169A>G	p.Arg57Gly	p.R57G	ENST00000379607	NM_001412.3	57	Agg/Ggg																																																																															
GATA1	2623	MSKCC	GRCh37	X	48649664	48649664	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	98	448	0	ENST00000376670.3:c.148C>A	p.Pro50Thr	p.P50T	ENST00000376670	NM_002049.3	50	Ccg/Acg																																																																															
AR	367	MSKCC	GRCh37	X	66937377	66937377	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs137852600		P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	94	444	0	ENST00000374690.3:c.2231G>T	p.Gly744Val	p.G744V	ENST00000374690	NM_000044.3	744	gGg/gTg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445045	89445045	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	133	317	0	ENST00000336596.2:c.1365del	p.Leu455PhefsTer33	p.L455Ffs*33	ENST00000336596	NM_005233.5	455	ttG/tt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161325	55161326	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	41	241	0	ENST00000257290.5:c.3156_3157delinsTT	p.Gly1053Cys	p.G1053C	ENST00000257290	NM_006206.4	1052	acGGgt/acTTgt																																																																															
WT1	7490	MSKCC	GRCh37	11	32414241	32414242	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	154	357	0	ENST00000332351.3:c.1309_1310delinsAG	p.Gln437Arg	p.Q437R	ENST00000332351	NM_024426.4	437	CAg/AGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012739-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	142	490	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0012739-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			226	102	247	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039347	47039347	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012739-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			103	166	330	0	ENST00000329236.7:c.739G>C	p.Ala247Pro	p.A247P	ENST00000329236	NM_001204466.1	247	Gcg/Ccg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713421	40713421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199947379		P-0012739-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	45	541	1	ENST00000373198.4:c.4094C>T	p.Thr1365Met	p.T1365M	ENST00000373198	NM_133170.3	1365	aCg/aTg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741708	17741708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012739-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			251	102	434	0	ENST00000250003.3:c.379G>A	p.Glu127Lys	p.E127K	ENST00000250003	NM_002478.4	127	Gag/Aag																																																																															
POLE	5426	MSKCC	GRCh37	12	133256114	133256114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs993340577		P-0012739-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	119	476	0	ENST00000320574.5:c.547G>A	p.Ala183Thr	p.A183T	ENST00000320574	NM_006231.2	183	Gcc/Acc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281575	49281575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012739-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			441	170	726	0	ENST00000282018.3:c.622G>A	p.Val208Met	p.V208M	ENST00000282018	NM_020377.2	208	Gtg/Atg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73336064	73336064	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012739-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			214	52	226	0	ENST00000377767.4:c.2339G>T	p.Arg780Ile	p.R780I	ENST00000377767	NM_014953.3	780	aGa/aTa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291807	15291807	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012739-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			371	142	606	0	ENST00000263388.2:c.2959A>T	p.Thr987Ser	p.T987S	ENST00000263388	NM_000435.2	987	Acc/Tcc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523287	9523287	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012739-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			288	110	533	0	ENST00000353224.5:c.1950G>C	p.Gln650His	p.Q650H	ENST00000353224	NM_177990.2	650	caG/caC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178942576	178942576	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012739-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			310	56	344	0	ENST00000263967.3:c.2383C>G	p.Gln795Glu	p.Q795E	ENST00000263967	NM_006218.2	795	Cag/Gag																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747939	41747939	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012739-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			153	65	328	0	ENST00000226382.2:c.830C>G	p.Pro277Arg	p.P277R	ENST00000226382	NM_003924.3	277	cCc/cGc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148515170	148515170	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1427041861		P-0012739-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			219	117	308	0	ENST00000320356.2:c.1039C>T	p.Arg347Trp	p.R347W	ENST00000320356	NM_004456.4	347	Cgg/Tgg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500931	8500931	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012739-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			314	147	454	0	ENST00000356435.5:c.1951G>T	p.Ala651Ser	p.A651S	ENST00000356435		651	Gca/Tca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	279	527	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0016138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	177	557	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131977992	131977992	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	132	405	0	ENST00000265335.6:c.3875A>G	p.Asn1292Ser	p.N1292S	ENST00000265335		1292	aAc/aGc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740581	58740581	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs35491690		P-0016138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	334	494	0	ENST00000305921.3:c.1486A>G	p.Ile496Val	p.I496V	ENST00000305921	NM_003620.3	496	Att/Gtt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49932770	49932770	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1085	210	543	0	ENST00000296474.3:c.3101G>C	p.Cys1034Ser	p.C1034S	ENST00000296474	NM_002447.2	1034	tGt/tCt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430773	181430774	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	252	510	0	ENST00000325404.1:c.627dup	p.Met210HisfsTer100	p.M210Hfs*100	ENST00000325404	NM_003106.3	209	tcc/tCcc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0017037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	81	380	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	130	594	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11217330	11217330	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	119	535	0	ENST00000361445.4:c.4348T>G	p.Tyr1450Asp	p.Y1450D	ENST00000361445	NM_004958.3	1450	Tat/Gat																																																																															
ATM	472	MSKCC	GRCh37	11	108153536	108153536	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs370974808		P-0017037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	99	459	0	ENST00000278616.4:c.3676G>C	p.Asp1226His	p.D1226H	ENST00000278616	NM_000051.3	1226	Gat/Cat																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211024	36211024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	115	684	1	ENST00000222270.7:c.775G>A	p.Val259Met	p.V259M	ENST00000222270	NM_014727.1	259	Gtg/Atg																																																																															
CIC	23152	MSKCC	GRCh37	19	42798127	42798127	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	88	468	0	ENST00000575354.2:c.4081del	p.Glu1361SerfsTer54	p.E1361Sfs*54	ENST00000575354	NM_015125.3	1361	Gag/ag																																																																															
INHA	3623	MSKCC	GRCh37	2	220440025	220440025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	129	790	2	ENST00000243786.2:c.878G>A	p.Gly293Asp	p.G293D	ENST00000243786	NM_002191.3	293	gGt/gAt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265630	41266188	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGT	CCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGT	-			P-0017037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	188	261	0	ENST00000349496.5:c.13+60_187del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
FOXP1	27086	MSKCC	GRCh37	3	71019884	71019884	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	G			P-0017037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	40	229	0	ENST00000318789.4:c.1722+3A>C		p.X574_splice	ENST00000318789	NM_032682.5	574																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44732826	44732837	+	inframe_deletion	In_Frame_Del	DEL	CCGCCGCCGCTG	CCGCCGCCGCTG	-	rs749062014		P-0017037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	71	273	0	ENST00000377967.4:c.40_51del	p.Ala14_Ala17del	p.A14_A17del	ENST00000377967	NM_021140.2	10	aCCGCCGCCGCTGcc/acc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0018681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	528	479	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0018681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	107	308	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0018681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	131	338	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
EP300	2033	MSKCC	GRCh37	22	41525914	41525914	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs773503228		P-0018681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	73	448	1	ENST00000263253.7:c.1189C>T	p.Arg397Ter	p.R397*	ENST00000263253	NM_001429.3	397	Cga/Tga																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24145561	24145561	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	54	460	0	ENST00000263121.7:c.580G>C	p.Glu194Gln	p.E194Q	ENST00000263121	NM_003073.3	194	Gag/Cag																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981586	101981586	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1319669560		P-0018681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	31	252	0	ENST00000282441.5:c.7C>T	p.Pro3Ser	p.P3S	ENST00000282441	NM_001130145.2	3	Ccc/Tcc																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250728	26250728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	45	230	0	ENST00000446824.2:c.106G>A	p.Val36Met	p.V36M	ENST00000446824	NM_021018.2	36	Gtg/Atg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2958195	2958195	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1443	169	442	0	ENST00000396946.4:c.2537T>G	p.Leu846Arg	p.L846R	ENST00000396946	NM_032415.4	846	cTg/cGg																																																																															
BTK	695	MSKCC	GRCh37	X	100611083	100611083	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	291	587	1	ENST00000308731.7:c.1523C>A	p.Ala508Asp	p.A508D	ENST00000308731	NM_000061.2	508	gCc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	248	1036	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520114	9520114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	121	546	0	ENST00000353224.5:c.2155C>T	p.His719Tyr	p.H719Y	ENST00000353224	NM_177990.2	719	Cac/Tac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602334	10602334	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1379198956		P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	248	1150	1	ENST00000171111.5:c.1244G>A	p.Arg415His	p.R415H	ENST00000171111	NM_203500.1	415	cGc/cAc																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792245	33792245	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1437	255	850	0	ENST00000498907.2:c.1076G>C	p.Ter359SerextTer36	p.*359Sext*36	ENST00000498907	NM_004364.3	359	tGa/tCa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906633	32906633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	43	554	0	ENST00000380152.3:c.1018G>A	p.Glu340Lys	p.E340K	ENST00000380152		340	Gaa/Aaa																																																																															
SDHB	6390	MSKCC	GRCh37	1	17355105	17355105	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	39	721	0	ENST00000375499.3:c.413A>T	p.Asp138Val	p.D138V	ENST00000375499	NM_003000.2	138	gAt/gTt																																																																															
TET1	80312	MSKCC	GRCh37	10	70332109	70332109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	23	256	0	ENST00000373644.4:c.14G>T	p.Arg5Leu	p.R5L	ENST00000373644	NM_030625.2	5	cGc/cTc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742480	17742480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	134	984	0	ENST00000250003.3:c.662G>T	p.Arg221Leu	p.R221L	ENST00000250003	NM_002478.4	221	cGg/cTg																																																																															
CCND2	894	MSKCC	GRCh37	12	4398099	4398099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	166	835	0	ENST00000261254.3:c.663C>A	p.Ser221Arg	p.S221R	ENST00000261254	NM_001759.3	221	agC/agA																																																																															
POLE	5426	MSKCC	GRCh37	12	133235935	133235935	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	148	831	0	ENST00000320574.5:c.3221T>C	p.Leu1074Pro	p.L1074P	ENST00000320574	NM_006231.2	1074	cTg/cCg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907112	32907112	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	66	662	0	ENST00000380152.3:c.1497G>C	p.Gln499His	p.Q499H	ENST00000380152		499	caG/caC																																																																															
RB1	5925	MSKCC	GRCh37	13	48937070	48937070	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	72	430	1	ENST00000267163.4:c.838G>T	p.Glu280Ter	p.E280*	ENST00000267163	NM_000321.2	280	Gaa/Taa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66782879	66782879	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	63	783	0	ENST00000307102.5:c.1108G>C	p.Asp370His	p.D370H	ENST00000307102	NM_002755.3	370	Gat/Cat																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67459186	67459186	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	180	764	0	ENST00000327367.4:c.602A>T	p.Asp201Val	p.D201V	ENST00000327367	NM_005902.3	201	gAc/gTc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476397	88476397	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	35	762	0	ENST00000360948.2:c.1735C>A	p.Leu579Met	p.L579M	ENST00000360948	NM_001012338.2	579	Ctg/Atg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3652196	3652196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	88	1198	0	ENST00000294008.3:c.873G>T	p.Lys291Asn	p.K291N	ENST00000294008	NM_032444.2	291	aaG/aaT																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817750	3817750	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1397325627		P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	58	920	0	ENST00000262367.5:c.3221C>T	p.Ser1074Leu	p.S1074L	ENST00000262367	NM_004380.2	1074	tCa/tTa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821632	72821632	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	12	124	0	ENST00000268489.5:c.10543G>T	p.Gly3515Cys	p.G3515C	ENST00000268489	NM_006885.3	3515	Ggc/Tgc																																																																															
RARA	5914	MSKCC	GRCh37	17	38512371	38512371	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1449127199		P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	83	880	0	ENST00000254066.5:c.1282G>T	p.Gly428Trp	p.G428W	ENST00000254066	NM_000964.3	428	Ggg/Tgg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47698159	47698159	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	45	649	0	ENST00000233146.2:c.1717G>T	p.Ala573Ser	p.A573S	ENST00000233146	NM_000251.2	573	Gcc/Tcc																																																																															
CRKL	1399	MSKCC	GRCh37	22	21272248	21272248	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	36	565	0	ENST00000354336.3:c.26C>G	p.Ser9Trp	p.S9W	ENST00000354336	NM_005207.3	9	tCg/tGg																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99812476	99812476	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	98	506	0	ENST00000280892.6:c.193C>G	p.Leu65Val	p.L65V	ENST00000280892	NM_001130678.1	65	Ctc/Gtc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295436	1295436	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	24	107	0				ENST00000310581	NM_198253.2																																																																																	
MAP3K1	4214	MSKCC	GRCh37	5	56160622	56160622	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	58	488	0	ENST00000399503.3:c.896A>G	p.Tyr299Cys	p.Y299C	ENST00000399503	NM_005921.1	299	tAt/tGt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592161	67592161	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	25	319	0	ENST00000274335.5:c.1977C>A	p.Cys659Ter	p.C659*	ENST00000274335		659	tgC/tgA																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250597	26250597	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	57	822	0	ENST00000446824.2:c.237C>G	p.Phe79Leu	p.F79L	ENST00000446824	NM_021018.2	79	ttC/ttG																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200021	138200021	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	121	573	0	ENST00000237289.4:c.1439G>T	p.Ser480Ile	p.S480I	ENST00000237289	NM_001270507.1	480	aGc/aTc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68981331	68981331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	40	653	0	ENST00000288368.4:c.1403C>T	p.Thr468Ile	p.T468I	ENST00000288368	NM_024870.2	468	aCa/aTa																																																																															
NBN	4683	MSKCC	GRCh37	8	90993107	90993107	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	64	463	0	ENST00000265433.3:c.335C>A	p.Pro112His	p.P112H	ENST00000265433	NM_002485.4	112	cCt/cAt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499787	8499787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	70	805	1	ENST00000356435.5:c.2182G>A	p.Val728Ile	p.V728I	ENST00000356435		728	Gtt/Att																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98232124	98232124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	34	668	0	ENST00000331920.6:c.1818G>T	p.Arg606Ser	p.R606S	ENST00000331920	NM_000264.3	606	agG/agT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	322	802	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0021575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	384	905	3	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089705	27089706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1286891446		P-0021575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	289	769	0	ENST00000324856.7:c.2666dup	p.Met890HisfsTer46	p.M890Hfs*46	ENST00000324856	NM_006015.4	887	-/G																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873003	134873003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	248	750	0	ENST00000398015.3:c.1307C>T	p.Thr436Ile	p.T436I	ENST00000398015	NM_004441.4	436	aCc/aTc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11291431	11291431	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	300	796	1	ENST00000361445.4:c.2575A>G	p.Arg859Gly	p.R859G	ENST00000361445	NM_004958.3	859	Agg/Ggg																																																																															
BCL6	604	MSKCC	GRCh37	3	187446261	187446261	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs535108808		P-0021575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	847	873	0	ENST00000232014.4:c.1427C>T	p.Thr476Met	p.T476M	ENST00000232014	NM_001130845.1	476	aCg/aTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	138	442	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061185	38061202	+	inframe_deletion	In_Frame_Del	DEL	GCACTTGAAGCGCTTCTG	GCACTTGAAGCGCTTCTG	-			P-0021788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	124	518	0	ENST00000250448.2:c.787_804del	p.Gln263_Cys268del	p.Q263_C268del	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTCAAGTGC/-																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58734012	58734012	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753470217		P-0021788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	168	556	0	ENST00000305921.3:c.1070G>A	p.Arg357His	p.R357H	ENST00000305921	NM_003620.3	357	cGc/cAc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25497878	25497878	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	219	718	0	ENST00000264709.3:c.571C>T	p.Gln191Ter	p.Q191*	ENST00000264709	NM_175629.2	191	Cag/Tag																																																																															
JUN	3725	MSKCC	GRCh37	1	59248153	59248154	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGCC			P-0022184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	17	92	0	ENST00000371222.2:c.585_589dup	p.Phe197TrpfsTer31	p.F197Wfs*31	ENST00000371222	NM_002228.3	197	ttt/tGGCCTtt																																																																															
MGA	23269	MSKCC	GRCh37	15	42019410	42019410	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs528009988		P-0022184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	90	586	0	ENST00000219905.7:c.3463C>T	p.Arg1155Ter	p.R1155*	ENST00000219905	NM_001164273.1	1155	Cga/Tga																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18272263	18272263	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1255802241		P-0022184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	16	16	0	ENST00000222254.8:c.773C>T	p.Pro258Leu	p.P258L	ENST00000222254	NM_005027.3	258	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112175180	112175180	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	16	288	0	ENST00000257430.4:c.3889G>C	p.Asp1297His	p.D1297H	ENST00000257430	NM_000038.5	1297	Gat/Cat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0022198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	3034	607	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
MET	4233	MSKCC	GRCh37	7	116411902	116411902	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0022198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3060	496	849	0	ENST00000397752.3:c.2888-1G>A		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
GLI1	2735	MSKCC	GRCh37	12	57857449	57857449	+	splice_region_variant,5_prime_UTR_variant	Splice_Region	SNP	G	G	C			P-0022198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	123	627	0	ENST00000228682.2:c.-26G>C		p.X9_splice	ENST00000228682	NM_005269.2	9																																																																																
MGA	23269	MSKCC	GRCh37	15	41988529	41988529	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	72	632	0	ENST00000219905.7:c.1321C>G	p.Leu441Val	p.L441V	ENST00000219905	NM_001164273.1	441	Cta/Gta																																																																															
MET	4233	MSKCC	GRCh37	7	116411914	116411914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3034	492	831	1	ENST00000397752.3:c.2899G>A	p.Glu967Lys	p.E967K	ENST00000397752	NM_000245.2	967	Gaa/Aaa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500902	8500902	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	83	620	1	ENST00000356435.5:c.1980C>A	p.His660Gln	p.H660Q	ENST00000356435		660	caC/caA																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248067	110248067	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	91	620	0	ENST00000374672.4:c.1405G>C	p.Asp469His	p.D469H	ENST00000374672	NM_004235.4	469	Gac/Cac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	622	651	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1023835002		P-0022731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	155	440	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913500		P-0022731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	229	270	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846325	156846325	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	333	713	0	ENST00000524377.1:c.1766T>C	p.Phe589Ser	p.F589S	ENST00000524377	NM_002529.3	589	tTt/tCt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861939	57861939	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	192	478	0	ENST00000228682.2:c.1242del	p.Lys415ArgfsTer15	p.K415Rfs*15	ENST00000228682	NM_005269.2	414	Ccc/cc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29002024	29002024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	100	492	0	ENST00000282397.4:c.1141G>T	p.Ala381Ser	p.A381S	ENST00000282397	NM_002019.4	381	Gct/Tct																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217107	66217107	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0022731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	135	374	0	ENST00000273854.3:c.2508G>T	p.Arg836Ser	p.R836S	ENST00000273854	NM_004439.5	836	agG/agT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532804	187532804	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	207	581	0	ENST00000441802.2:c.9589C>A	p.Leu3197Ile	p.L3197I	ENST00000441802	NM_005245.3	3197	Ctc/Atc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046334	69046334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	474	471	0	ENST00000288368.4:c.3807G>T	p.Gln1269His	p.Q1269H	ENST00000288368	NM_024870.2	1269	caG/caT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0023100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	246	741	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	532	898	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154241	2154242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755455183		P-0023100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	101	879	3	ENST00000434045.2:c.686dup	p.Glu230ArgfsTer50	p.E230Rfs*50	ENST00000434045	NM_001127598.1	229	cca/ccCa																																																																															
ARAF	369	MSKCC	GRCh37	X	47422697	47422697	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	178	788	0	ENST00000377045.4:c.169G>C	p.Asp57His	p.D57H	ENST00000377045	NM_001654.4	57	Gac/Cac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711962	89711962	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	52	583	0	ENST00000371953.3:c.580T>G	p.Leu194Val	p.L194V	ENST00000371953	NM_000314.4	194	Ttg/Gtg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16042482	16042482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	20	717	0	ENST00000268712.3:c.1192C>T	p.Arg398Trp	p.R398W	ENST00000268712	NM_006311.3	398	Cgg/Tgg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71090530	71090530	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	45	606	0	ENST00000318789.4:c.818C>G	p.Pro273Arg	p.P273R	ENST00000318789	NM_032682.5	273	cCa/cGa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39930345	39930345	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	88	813	0	ENST00000378444.4:c.3119A>C	p.Asp1040Ala	p.D1040A	ENST00000378444	NM_001123385.1	1040	gAc/gCc																																																																															
ARAF	369	MSKCC	GRCh37	X	47424269	47424269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	191	853	1	ENST00000377045.4:c.274G>A	p.Glu92Lys	p.E92K	ENST00000377045	NM_001654.4	92	Gaa/Aaa																																																																															
ARAF	369	MSKCC	GRCh37	X	47424669	47424669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	185	863	2	ENST00000377045.4:c.477G>T	p.Gln159His	p.Q159H	ENST00000377045	NM_001654.4	159	caG/caT																																																																															
ARAF	369	MSKCC	GRCh37	X	47424682	47424682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	184	882	0	ENST00000377045.4:c.490G>A	p.Gly164Ser	p.G164S	ENST00000377045	NM_001654.4	164	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578242	7578242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	46	1037	1	ENST00000269305.4:c.607G>T	p.Val203Leu	p.V203L	ENST00000269305	NM_001126112.2	203	Gtg/Ttg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			159	16	163	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			133	38	204	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			159	12	213	0	ENST00000303115.3:c.361del	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600392	10600392	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	97	433	1	ENST00000171111.5:c.1463A>T	p.Glu488Val	p.E488V	ENST00000171111	NM_203500.1	488	gAg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112102932	112102932	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			76	23	179	0	ENST00000257430.4:c.271del	p.Met91CysfsTer34	p.M91Cfs*34	ENST00000257430	NM_000038.5	89	tcA/tc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426737	47426737	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200106543		P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			237	60	321	1	ENST00000377045.4:c.982C>T	p.Arg328Trp	p.R328W	ENST00000377045	NM_001654.4	328	Cgg/Tgg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300040	137300040	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			491	33	486	3	ENST00000481739.1:c.331del	p.Leu111TrpfsTer57	p.L111Wfs*57	ENST00000481739	NM_002957.4	109	Ccc/cc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	245927443	245927443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			342	47	269	0	ENST00000388985.4:c.1085del	p.Phe362SerfsTer12	p.F362Sfs*12	ENST00000388985		362	tTc/tc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300076	137300076	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373515948		P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			447	65	493	2	ENST00000481739.1:c.361G>A	p.Ala121Thr	p.A121T	ENST00000481739	NM_002957.4	121	Gcc/Acc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117704499	117704499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			127	20	132	0	ENST00000368508.3:c.2477C>T	p.Pro826Leu	p.P826L	ENST00000368508	NM_002944.2	826	cCt/cTt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109769	115109769	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			403	102	496	1	ENST00000257566.3:c.2109del	p.Met704CysfsTer185	p.M704Cfs*185	ENST00000257566	NM_016569.3	703	tcC/tc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097022	11097044	+	protein_altering_variant	In_Frame_Del	DEL	ATTTAACCAGAACCAGCTGCACC	ATTTAACCAGAACCAGCTGCACC	GCACG			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	72	498	2	ENST00000344626.4:c.513_535delinsGCACG	p.Phe172_Gln179delinsHisGlu	p.F172_Q179delinsHE	ENST00000344626	NM_003072.3	171	ccATTTAACCAGAACCAGCTGCACCag/ccGCACGag																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815712	32815712	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1374606443		P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	74	370	0	ENST00000354258.4:c.1904G>A	p.Arg635His	p.R635H	ENST00000354258	NM_000593.5	635	cGc/cAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409042	139409042	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			404	83	533	0	ENST00000277541.6:c.2127C>G	p.His709Gln	p.H709Q	ENST00000277541	NM_017617.3	709	caC/caG																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262463	16262463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			106	30	113	0	ENST00000375759.3:c.9728C>T	p.Pro3243Leu	p.P3243L	ENST00000375759	NM_015001.2	3243	cCc/cTc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78425922	78425923	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			184	26	176	0	ENST00000370768.2:c.1522dup	p.Gln508ProfsTer17	p.Q508Pfs*17	ENST00000370768	NM_003902.3	508	cag/cCag																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981887	201981887	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			610	43	468	0	ENST00000359651.3:c.598G>T	p.Gly200Trp	p.G200W	ENST00000359651		200	Ggg/Tgg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575147	64575147	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs886039414		P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			199	31	222	0	ENST00000337652.1:c.675G>A	p.Trp225Ter	p.W225*	ENST00000337652	NM_130803.2	225	tgG/tgA																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643682	38643682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			238	44	281	0	ENST00000299084.4:c.1152G>T	p.Glu384Asp	p.E384D	ENST00000299084	NM_152594.2	384	gaG/gaT																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9984856	9984856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			215	58	233	0	ENST00000330684.3:c.1109G>A	p.Arg370Gln	p.R370Q	ENST00000330684	NM_001134407.1	370	cGg/cAg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654633	67654633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			201	50	193	2	ENST00000264010.4:c.1120A>G	p.Thr374Ala	p.T374A	ENST00000264010	NM_006565.3	374	Act/Gct																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942073	81942073	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			301	19	285	0	ENST00000359376.3:c.1610T>C	p.Val537Ala	p.V537A	ENST00000359376	NM_002661.3	537	gTg/gCg																																																																															
AXL	558	MSKCC	GRCh37	19	41765802	41765802	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			244	34	170	0	ENST00000301178.4:c.2678G>T	p.Gly893Val	p.G893V	ENST00000301178	NM_021913.4	893	gGt/gTt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288989	212288989	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			135	26	205	0	ENST00000342788.4:c.2757A>C	p.Lys919Asn	p.K919N	ENST00000342788	NM_005235.2	919	aaA/aaC																																																																															
EP300	2033	MSKCC	GRCh37	22	41513480	41513480	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1244840343		P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	24	283	0	ENST00000263253.7:c.384G>T	p.Gln128His	p.Q128H	ENST00000263253	NM_001429.3	128	caG/caT																																																																															
KDR	3791	MSKCC	GRCh37	4	55974007	55974007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	68	313	0	ENST00000263923.4:c.1309T>C	p.Tyr437His	p.Y437H	ENST00000263923	NM_002253.2	437	Tac/Cac																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911200	29911200	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs199474540		P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	26	283	0	ENST00000376809.5:c.499A>C	p.Thr167Pro	p.T167P	ENST00000376809	NM_002116.7	167	Acc/Ccc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508284	106508284	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			159	27	134	0	ENST00000359195.3:c.278C>A	p.Pro93Gln	p.P93Q	ENST00000359195	NM_002649.2	93	cCg/cAg																																																																															
MET	4233	MSKCC	GRCh37	7	116395457	116395458	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			162	47	208	0	ENST00000397752.3:c.1752_1753del	p.Cys584TrpfsTer10	p.C584Wfs*10	ENST00000397752	NM_000245.2	584	TGt/t																																																																															
JAK2	3717	MSKCC	GRCh37	9	5055689	5055689	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			56	19	147	0	ENST00000381652.3:c.960del	p.Pro321LeufsTer22	p.P321Lfs*22	ENST00000381652	NM_004972.3	319	gaT/ga																																																																															
FANCC	2176	MSKCC	GRCh37	9	97912238	97912238	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			239	58	245	0	ENST00000289081.3:c.653A>C	p.Glu218Ala	p.E218A	ENST00000289081	NM_000136.2	218	gAg/gCg																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321300	1321300	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			208	51	254	0	ENST00000381566.1:c.455A>T	p.Tyr152Phe	p.Y152F	ENST00000381566		152	tAc/tTc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426421	47426421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			286	52	357	0	ENST00000377045.4:c.764G>T	p.Arg255Leu	p.R255L	ENST00000377045	NM_001654.4	255	cGg/cTg																																																																															
BTK	695	MSKCC	GRCh37	X	100617634	100617634	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			246	41	357	0	ENST00000308731.7:c.435C>G	p.Cys145Trp	p.C145W	ENST00000308731	NM_000061.2	145	tgC/tgG																																																																															
STAG2	10735	MSKCC	GRCh37	X	123220506	123220506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			239	40	280	0	ENST00000218089.9:c.3163G>T	p.Asp1055Tyr	p.D1055Y	ENST00000218089	NM_001042749.1	1055	Gac/Tac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919101	178919101	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs541134560		P-0026300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	56	104	0	ENST00000263967.3:c.586G>A	p.Val196Ile	p.V196I	ENST00000263967	NM_006218.2	196	Gta/Ata																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526648	106526648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	110	188	0	ENST00000359195.3:c.2941G>A	p.Glu981Lys	p.E981K	ENST00000359195	NM_002649.2	981	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0026300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	146	287	0	ENST00000269305.4:c.560-2A>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
PIK3R3	8503	MSKCC	GRCh37	1	46511645	46511645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	322	332	0	ENST00000262741.5:c.1132G>A	p.Gly378Ser	p.G378S	ENST00000262741	NM_003629.3	378	Ggt/Agt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49418679	49418696	+	inframe_deletion	In_Frame_Del	DEL	CAGCCTCTTTTCTCATGG	CAGCCTCTTTTCTCATGG	-			P-0026300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	116	270	0	ENST00000301067.7:c.15818_15835del	p.Ala5273_Ala5278del	p.A5273_A5278del	ENST00000301067	NM_003482.3	5273	gCCATGAGAAAAGAGGCTGac/gac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778390	3778390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	186	403	0	ENST00000262367.5:c.6658G>T	p.Gly2220Cys	p.G2220C	ENST00000262367	NM_004380.2	2220	Ggc/Tgc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246871	41246871	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1376262238		P-0026300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	68	120	0	ENST00000357654.3:c.677G>A	p.Cys226Tyr	p.C226Y	ENST00000357654	NM_007294.3	226	tGt/tAt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56414877	56414877	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	157	281	0	ENST00000348428.3:c.2278G>T	p.Val760Phe	p.V760F	ENST00000348428	NM_006785.3	760	Gtt/Ttt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46281213	46281213	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148634537		P-0026300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	137	254	0	ENST00000371998.3:c.4010C>T	p.Ser1337Leu	p.S1337L	ENST00000371998		1337	tCg/tTg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31483733	31483733	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0026300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	54	111	0	ENST00000344624.3:c.1999C>G	p.Pro667Ala	p.P667A	ENST00000344624		667	Cct/Gct																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509244	106509244	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	120	294	0	ENST00000359195.3:c.1238G>C	p.Trp413Ser	p.W413S	ENST00000359195	NM_002649.2	413	tGg/tCg																																																																															
MET	4233	MSKCC	GRCh37	7	116340239	116340239	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	80	164	0	ENST00000397752.3:c.1101C>G	p.Ile367Met	p.I367M	ENST00000397752	NM_000245.2	367	atC/atG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0027541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	71	493	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	146	490	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	108	556	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	176	402	1				ENST00000310581	NM_198253.2																																																																																	
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	51	450	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	143	393	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112154942	112154942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779780		P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	240	592	0	ENST00000257430.4:c.1213C>T	p.Arg405Ter	p.R405*	ENST00000257430	NM_000038.5	405	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	114	469	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711368	114711368	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	16	184	0	ENST00000543371.1:c.381+2T>G		p.X127_splice	ENST00000543371	NM_001198531.1	127																																																																																
GLI1	2735	MSKCC	GRCh37	12	57863266	57863266	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149950420		P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	75	542	0	ENST00000228682.2:c.1361C>T	p.Pro454Leu	p.P454L	ENST00000228682	NM_005269.2	454	cCg/cTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115111969	115111969	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	93	587	0	ENST00000257566.3:c.1770+1G>C		p.X590_splice	ENST00000257566	NM_016569.3	590																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72923807	72923807	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766702555		P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	67	529	0	ENST00000268489.5:c.3271G>A	p.Val1091Ile	p.V1091I	ENST00000268489	NM_006885.3	1091	Gtt/Att																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267215	41267215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	143	418	0	ENST00000349496.5:c.799G>A	p.Glu267Lys	p.E267K	ENST00000349496	NM_001904.3	267	Gaa/Aaa																																																																															
ATR	545	MSKCC	GRCh37	3	142242845	142242845	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	57	478	0	ENST00000350721.4:c.4142T>C	p.Phe1381Ser	p.F1381S	ENST00000350721	NM_001184.3	1381	tTt/tCt																																																																															
APC	324	MSKCC	GRCh37	5	112174119	112174120	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	129	379	0	ENST00000257430.4:c.2831dup	p.Asn944LysfsTer2	p.N944Kfs*2	ENST00000257430	NM_000038.5	943	tca/tcAa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	103	567	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0028072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	201	563	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271208	26271208	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	118	315	0	ENST00000305910.3:c.405A>T	p.Arg135Ser	p.R135S	ENST00000305910	NM_003534.2	135	agA/agT																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252973	36252974	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0028072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	326	413	0	ENST00000300305.3:c.388_389del	p.Val130HisfsTer7	p.V130Hfs*7	ENST00000300305		130	GTc/c																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	116	387	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123788	11123788	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1064795105		P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	206	438	0	ENST00000344626.4:c.2438C>T	p.Ser813Leu	p.S813L	ENST00000344626	NM_003072.3	813	tCa/tTa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098959	178098959	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519921		P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	117	233	0	ENST00000397062.3:c.86A>G	p.Asp29Gly	p.D29G	ENST00000397062	NM_006164.4	29	gAt/gGt																																																																															
STK11	6794	MSKCC	GRCh37	19	1223104	1223109	+	inframe_deletion	In_Frame_Del	DEL	GGACGA	GGACGA	-	rs762810203		P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	347	573	0	ENST00000326873.7:c.1051_1056del	p.Glu351_Asp352del	p.E351_D352del	ENST00000326873	NM_000455.4	347	gcGGACGAg/gcg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65349014	65349014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	206	323	0	ENST00000342505.4:c.151G>T	p.Gly51Cys	p.G51C	ENST00000342505	NM_002227.2	51	Ggc/Tgc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156834528	156834528	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1405	323	692	3	ENST00000524377.1:c.296T>A	p.Val99Glu	p.V99E	ENST00000524377	NM_002529.3	99	gTg/gAg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646738	23646738	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs929474806		P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	247	563	0	ENST00000261584.4:c.1129C>T	p.Gln377Ter	p.Q377*	ENST00000261584	NM_024675.3	377	Caa/Taa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350861	89350861	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	44	729	0	ENST00000301030.4:c.2089G>C	p.Glu697Gln	p.E697Q	ENST00000301030	NM_001256183.1	697	Gaa/Caa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220697	1221719	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGTCGGCTGGGGTCACCCTGTAAGTGCCCCGCCCCCCCGGGCACTCACCACACGCACACTCCGAGGGGCCTCTGCGTCTTGGGCAGCTGCCGGCCTGTGGGCGCAGGGCGTGGCCACCGGCCCAGACCCTCTCTGGCCACAGCCGCTAGGGGGTGCTTACTTTATGGAAATGTAACTCATACGGCAGATGGTGGTTCACCCGTGTGAAGTGCAGCCTGGCCCGTCAGGGATCTTCACAGAGTGGCACGGCCGACCCTCCTCCCAGAGCCCCACAGGGAAGCTGGGCGGGTGACAGCAGCTCCAGGCCCCTTCCCCGGGTGGGTCCAGAGGACACTCCCCTCCTACCCCGTAGCCTCCACTAGTGGAAGGTGGTGAAGACAGAGGTGTCCTTGAGTCCACAGGGCCTCTGGTCCAGCAGCCACGGGACGCCTCTGTCCCTGGGGTAGAGCTGGGGCTCCTAGGGCGTCAACCACCTTGACTGACCACGCCTTTCTTCCCTCCCCTCGAAATGAAGCTACAACATCACCACGGGTCTGTACCCCTTCGAAGGGGACAACATCTACAAGTTGTTTGAGAACATCGGGAAGGGGAGCTACGCCATCCCGGGCGACTGTGGCCCCCCGCTCTCTGACCTGCTGAAAGGTGGGAGCCTCATCCCTCTGCCCGCAGCCCCAGGGAGGCGGGGCTTTTGTGCAGAAATGTAGGGTTGGGGGTGTCAGGTGGGGGGCTATTGGCCCCGAGACCCCAGCAGGCATTGAGAGGACTGAGTGGAGAGGCCGACCTCCCCGCAGGGCCTGGTTTGCCAGGTCCCTCAGCTCCACCCTGCTTCTGGGCCCTGTTCACCCTCCGAACTCCCACCCCAGAGGGCAGTGCTGCCCTGCGCCTCCCCCAGCCCCACCCTCGGGGGCTCCCTGGCTTGCAGGGTCTGTCAGGGTTGTCCTGCTGCACTTCCTACGCATGGCAGCAGGTGGCACTGGCCGTCCGTCCATCTGCCCAGTGGCCTTGGGAGAACGGAACCGCCC	TGGTCGGCTGGGGTCACCCTGTAAGTGCCCCGCCCCCCCGGGCACTCACCACACGCACACTCCGAGGGGCCTCTGCGTCTTGGGCAGCTGCCGGCCTGTGGGCGCAGGGCGTGGCCACCGGCCCAGACCCTCTCTGGCCACAGCCGCTAGGGGGTGCTTACTTTATGGAAATGTAACTCATACGGCAGATGGTGGTTCACCCGTGTGAAGTGCAGCCTGGCCCGTCAGGGATCTTCACAGAGTGGCACGGCCGACCCTCCTCCCAGAGCCCCACAGGGAAGCTGGGCGGGTGACAGCAGCTCCAGGCCCCTTCCCCGGGTGGGTCCAGAGGACACTCCCCTCCTACCCCGTAGCCTCCACTAGTGGAAGGTGGTGAAGACAGAGGTGTCCTTGAGTCCACAGGGCCTCTGGTCCAGCAGCCACGGGACGCCTCTGTCCCTGGGGTAGAGCTGGGGCTCCTAGGGCGTCAACCACCTTGACTGACCACGCCTTTCTTCCCTCCCCTCGAAATGAAGCTACAACATCACCACGGGTCTGTACCCCTTCGAAGGGGACAACATCTACAAGTTGTTTGAGAACATCGGGAAGGGGAGCTACGCCATCCCGGGCGACTGTGGCCCCCCGCTCTCTGACCTGCTGAAAGGTGGGAGCCTCATCCCTCTGCCCGCAGCCCCAGGGAGGCGGGGCTTTTGTGCAGAAATGTAGGGTTGGGGGTGTCAGGTGGGGGGCTATTGGCCCCGAGACCCCAGCAGGCATTGAGAGGACTGAGTGGAGAGGCCGACCTCCCCGCAGGGCCTGGTTTGCCAGGTCCCTCAGCTCCACCCTGCTTCTGGGCCCTGTTCACCCTCCGAACTCCCACCCCAGAGGGCAGTGCTGCCCTGCGCCTCCCCCAGCCCCACCCTCGGGGGCTCCCTGGCTTGCAGGGTCTGTCAGGGTTGTCCTGCTGCACTTCCTACGCATGGCAGCAGGTGGCACTGGCCGTCCGTCCATCTGCCCAGTGGCCTTGGGAGAACGGAACCGCCC	-			P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	339	657	0	ENST00000326873.7:c.718_863-226del		p.X240_splice	ENST00000326873	NM_000455.4	240																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40713411	40713411	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	261	544	1	ENST00000373198.4:c.4104del	p.Lys1369SerfsTer30	p.K1369Sfs*30	ENST00000373198	NM_133170.3	1368	tcC/tc																																																																															
RAC2	5880	MSKCC	GRCh37	22	37622806	37622806	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	696	653	0	ENST00000249071.6:c.486G>C	p.Gln162His	p.Q162H	ENST00000249071	NM_002872.4	162	caG/caC																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670844	134670844	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	176	314	0	ENST00000398015.3:c.755G>T	p.Arg252Leu	p.R252L	ENST00000398015	NM_004441.4	252	cGa/cTa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467690	66467690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	140	276	1	ENST00000273854.3:c.579G>T	p.Met193Ile	p.M193I	ENST00000273854	NM_004439.5	193	atG/atT																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143003194	143003194	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	159	346	1	ENST00000262992.4:c.2632T>A	p.Cys878Ser	p.C878S	ENST00000262992	NM_001101669.1	878	Tgc/Agc																																																																															
RAC1	5879	MSKCC	GRCh37	7	6441973	6441973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	369	664	0	ENST00000356142.4:c.532G>A	p.Ala178Thr	p.A178T	ENST00000356142	NM_018890.3	178	Gcg/Acg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0028945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	63	698	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579361	7579361	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	68	861	0	ENST00000269305.4:c.326T>A	p.Phe109Tyr	p.F109Y	ENST00000269305	NM_001126112.2	109	tTc/tAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023644	27023662	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCCTCCCTCCTCCAGC	GCCGCCTCCCTCCTCCAGC	-			P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	27	409	0	ENST00000324856.7:c.753_771del	p.Ser254ProfsTer103	p.S254Pfs*103	ENST00000324856	NM_006015.4	250	aaGCCGCCTCCCTCCTCCAGC/aa																																																																															
ATM	472	MSKCC	GRCh37	11	108186749	108186749	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	35	494	0	ENST00000278616.4:c.6107A>C	p.Tyr2036Ser	p.Y2036S	ENST00000278616	NM_000051.3	2036	tAt/tCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	50	522	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	48	462	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46298737	46298737	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	43	341	1	ENST00000334344.6:c.5384A>G	p.Asn1795Ser	p.N1795S	ENST00000334344	NM_152641.2	1795	aAt/aGt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646419	23646419	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057520736		P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	35	516	0	ENST00000261584.4:c.1448C>T	p.Ser483Leu	p.S483L	ENST00000261584	NM_024675.3	483	tCa/tTa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56367676	56367676	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs560703292		P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	24	246	0	ENST00000348428.3:c.502C>A	p.Pro168Thr	p.P168T	ENST00000348428	NM_006785.3	168	Cca/Aca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272066	15272066	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	54	624	1	ENST00000263388.2:c.6373G>T	p.Gly2125Trp	p.G2125W	ENST00000263388	NM_000435.2	2125	Ggg/Tgg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945910	17945910	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201000040		P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	75	702	3	ENST00000458235.1:c.2029G>A	p.Ala677Thr	p.A677T	ENST00000458235	NM_000215.3	677	Gct/Act																																																																															
ALK	238	MSKCC	GRCh37	2	29917793	29917793	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs149145987		P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	53	601	0	ENST00000389048.3:c.875G>T	p.Arg292Leu	p.R292L	ENST00000389048	NM_004304.4	292	cGc/cTc																																																																															
MET	4233	MSKCC	GRCh37	7	116380989	116380989	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	54	536	0	ENST00000397752.3:c.1611G>C	p.Gln537His	p.Q537H	ENST00000397752	NM_000245.2	537	caG/caC																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128419986	128419986	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	61	703	0	ENST00000265960.3:c.442C>T	p.Gln148Ter	p.Q148*	ENST00000265960	NM_001006617.1	148	Cag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044965	47044965	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	81	370	0	ENST00000329236.7:c.2057G>T	p.Cys686Phe	p.C686F	ENST00000329236	NM_001204466.1	686	tGc/tTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	130	334	0				ENST00000310581	NM_198253.2																																																																																	
FAT1	2195	MSKCC	GRCh37	4	187584629	187584629	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1479462211		P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	108	454	0	ENST00000441802.2:c.3404A>G	p.Asn1135Ser	p.N1135S	ENST00000441802	NM_005245.3	1135	aAt/aGt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910647	29910647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	158	734	0	ENST00000376809.5:c.187G>A	p.Asp63Asn	p.D63N	ENST00000376809	NM_002116.7	63	Gac/Aac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032594	47032594	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	202	322	0	ENST00000329236.7:c.269del	p.Ser90Ter	p.S90*	ENST00000329236	NM_001204466.1	90	tCa/ta																																																																															
TET1	80312	MSKCC	GRCh37	10	70405181	70405181	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	82	331	0	ENST00000373644.4:c.2695C>G	p.Gln899Glu	p.Q899E	ENST00000373644	NM_030625.2	899	Caa/Gaa																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514296	69514296	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	93	581	0	ENST00000294312.3:c.385G>C	p.Asp129His	p.D129H	ENST00000294312	NM_005117.2	129	Gat/Cat																																																																															
SESN3	143686	MSKCC	GRCh37	11	94926629	94926629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	37	443	0	ENST00000536441.1:c.136G>A	p.Glu46Lys	p.E46K	ENST00000536441	NM_144665.3	46	Gag/Aag																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112919983	112919983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	172	562	0	ENST00000351677.2:c.1198G>A	p.Glu400Lys	p.E400K	ENST00000351677	NM_002834.3	400	Gaa/Aaa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557711	21557711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	117	588	0	ENST00000382592.4:c.2134C>T	p.His712Tyr	p.H712Y	ENST00000382592	NM_014572.2	712	Cac/Tac																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646384	23646384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	80	548	0	ENST00000261584.4:c.1483G>A	p.Glu495Lys	p.E495K	ENST00000261584	NM_024675.3	495	Gaa/Aaa																																																																															
NF1	4763	MSKCC	GRCh37	17	29541604	29541604	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs1060500331		P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	25	122	0	ENST00000358273.4:c.1527+1G>T		p.X509_splice	ENST00000358273	NM_001042492.2	509																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212248530	212248530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	201	561	0	ENST00000342788.4:c.3737G>T	p.Ser1246Ile	p.S1246I	ENST00000342788	NM_005235.2	1246	aGc/aTc																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502843	186502843	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	83	389	0	ENST00000323963.5:c.301G>T	p.Glu101Ter	p.E101*	ENST00000323963		101	Gag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509975	187509975	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	89	344	0	ENST00000441802.2:c.13538G>C	p.Arg4513Thr	p.R4513T	ENST00000441802	NM_005245.3	4513	aGa/aCa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178032	56178032	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	56	283	0	ENST00000399503.3:c.3005C>G	p.Ser1002Cys	p.S1002C	ENST00000399503	NM_005921.1	1002	tCt/tGt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979221	93979221	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	26	229	0	ENST00000369303.4:c.1607A>T	p.Glu536Val	p.E536V	ENST00000369303	NM_004440.3	536	gAg/gTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987322	2987322	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs758661288		P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	81	594	0	ENST00000396946.4:c.107A>G	p.Tyr36Cys	p.Y36C	ENST00000396946	NM_032415.4	36	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	233	481	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076937	41076937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	90	523	0	ENST00000373198.4:c.1483G>A	p.Gly495Arg	p.G495R	ENST00000373198	NM_133170.3	495	Ggg/Agg																																																																															
RET	5979	MSKCC	GRCh37	10	43607569	43607570	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	344	805	2	ENST00000355710.3:c.1545_1546delinsAA	p.Cys515_Pro516delinsTer	p.C515_P516delins*	ENST00000355710	NM_020975.4	515	tgCCcc/tgAAcc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588156	69588156	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1215	109	664	0	ENST00000168712.1:c.542T>C	p.Leu181Pro	p.L181P	ENST00000168712	NM_002007.2	181	cTg/cCg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625156	69625156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1220	106	713	0	ENST00000334134.2:c.637C>A	p.Gln213Lys	p.Q213K	ENST00000334134	NM_005247.2	213	Cag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108121641	108121673	+	inframe_deletion	In_Frame_Del	DEL	CTGGAATAAAATTTGGTGTATTACCTTTCGTGG	CTGGAATAAAATTTGGTGTATTACCTTTCGTGG	-			P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	154	507	0	ENST00000278616.4:c.1449_1481del	p.Trp484_Gly494del	p.W484_G494del	ENST00000278616	NM_000051.3	483	ctCTGGAATAAAATTTGGTGTATTACCTTTCGTGGt/ctt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118371784	118371784	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	151	436	0	ENST00000534358.1:c.6241G>T	p.Val2081Phe	p.V2081F	ENST00000534358	NM_005933.3	2081	Gtc/Ttc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	394791	394791	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	282	566	0	ENST00000399788.2:c.4904G>A	p.Trp1635Ter	p.W1635*	ENST00000399788	NM_001042603.1	1635	tGg/tAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444039	49444039	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	94	600	0	ENST00000301067.7:c.3332C>G	p.Ala1111Gly	p.A1111G	ENST00000301067	NM_003482.3	1111	gCc/gGc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001309	29001309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	99	333	0	ENST00000282397.4:c.1423C>T	p.His475Tyr	p.H475Y	ENST00000282397	NM_002019.4	475	Cat/Tat																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30322632	30322633	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	131	568	0	ENST00000322652.5:c.1645_1646delinsTT	p.Gly549Leu	p.G549L	ENST00000322652	NM_015355.2	549	GGg/TTg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313457	30313457	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	218	572	0	ENST00000262643.3:c.1057G>C	p.Ala353Pro	p.A353P	ENST00000262643	NM_001238.2	353	Gct/Cct																																																																															
ALK	238	MSKCC	GRCh37	2	29416347	29416347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1159	450	821	0	ENST00000389048.3:c.4606G>A	p.Glu1536Lys	p.E1536K	ENST00000389048	NM_004304.4	1536	Gag/Aag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661796	227661796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1141	97	814	0	ENST00000305123.5:c.1659G>T	p.Glu553Asp	p.E553D	ENST00000305123	NM_005544.2	553	gaG/gaT																																																																															
TOP1	7150	MSKCC	GRCh37	20	39721114	39721114	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	75	435	0	ENST00000361337.2:c.617G>T	p.Trp206Leu	p.W206L	ENST00000361337	NM_003286.2	206	tGg/tTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101136	41101136	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	105	614	0	ENST00000373198.4:c.1220G>T	p.Trp407Leu	p.W407L	ENST00000373198	NM_133170.3	407	tGg/tTg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081569	143081569	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	75	584	0	ENST00000262992.4:c.1505del	p.Pro502GlnfsTer2	p.P502Qfs*2	ENST00000262992	NM_001101669.1	502	cCa/ca																																																																															
ESR1	2099	MSKCC	GRCh37	6	152201827	152201827	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	153	380	0	ENST00000206249.3:c.681C>G	p.Cys227Trp	p.C227W	ENST00000206249	NM_000125.3	227	tgC/tgG																																																																															
PARK2	5071	MSKCC	GRCh37	6	162622188	162622188	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	172	461	0	ENST00000366898.1:c.509G>T	p.Arg170Met	p.R170M	ENST00000366898	NM_004562.2	170	aGg/aTg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729536	41729536	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	168	624	0	ENST00000242208.4:c.993G>T	p.Lys331Asn	p.K331N	ENST00000242208	NM_002192.2	331	aaG/aaT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273078	55273078	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs865825533		P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	207	542	0	ENST00000275493.2:c.3401G>T	p.Gly1134Val	p.G1134V	ENST00000275493	NM_005228.3	1134	gGc/gTc																																																																															
HGF	3082	MSKCC	GRCh37	7	81334819	81334819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	134	494	0	ENST00000222390.5:c.1897C>A	p.His633Asn	p.H633N	ENST00000222390	NM_000601.4	633	Cat/Aat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879262	151879262	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	87	489	0	ENST00000262189.6:c.5683A>T	p.Met1895Leu	p.M1895L	ENST00000262189	NM_170606.2	1895	Atg/Ttg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992980	68992980	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C	rs1181417548		P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	67	340	0	ENST00000288368.4:c.1786-1G>C		p.X596_splice	ENST00000288368	NM_024870.2	596																																																																																
CRLF2	64109	MSKCC	GRCh37	X	1315015	1315015	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0032016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	106	583	0				ENST00000381566																																																																																		
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0032253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	88	438	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0032253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	291	374	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0032253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	112	229	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0032253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	107	220	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120733	115120733	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	128	506	0	ENST00000257566.3:c.273G>C	p.Lys91Asn	p.K91N	ENST00000257566	NM_016569.3	91	aaG/aaC																																																																															
SETD8	387893	MSKCC	GRCh37	12	123873988	123873988	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	10	27	0	ENST00000330479.4:c.19A>T	p.Met7Leu	p.M7L	ENST00000330479	NM_020382.3	7	Atg/Ttg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132583	11132583	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	203	586	0	ENST00000344626.4:c.2799C>G	p.Phe933Leu	p.F933L	ENST00000344626	NM_003072.3	933	ttC/ttG																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044942	47044942	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	419	370	0	ENST00000329236.7:c.2034G>A	p.Trp678Ter	p.W678*	ENST00000329236	NM_001204466.1	678	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782144		P-0032265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	141	743	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564530	86564530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	47	492	0	ENST00000274376.6:c.266del	p.Gly89GlufsTer7	p.G89Efs*7	ENST00000274376	NM_002890.2	88	Ggg/gg																																																																															
TET2	54790	MSKCC	GRCh37	4	106197365	106197365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	45	291	0	ENST00000380013.4:c.5698G>T	p.Val1900Phe	p.V1900F	ENST00000380013	NM_001127208.2	1900	Gtc/Ttc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610615	10610615	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	84	537	0	ENST00000171111.5:c.95T>G	p.Met32Arg	p.M32R	ENST00000171111	NM_203500.1	32	aTg/aGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0032292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	15	908	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0032292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	28	808	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624296	89624296	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs786201995		P-0032292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	20	842	0	ENST00000371953.3:c.70G>C	p.Asp24His	p.D24H	ENST00000371953	NM_000314.4	24	Gac/Cac																																																																															
AGO2	27161	MSKCC	GRCh37	8	141557668	141557668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	42	1324	0	ENST00000220592.5:c.1647G>A	p.Met549Ile	p.M549I	ENST00000220592	NM_012154.3	549	atG/atA																																																																															
XPO1	7514	MSKCC	GRCh37	2	61706065	61706065	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	24	885	1	ENST00000401558.2:c.3106G>T	p.Glu1036Ter	p.E1036*	ENST00000401558	NM_003400.3	1036	Gaa/Taa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61706089	61706089	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	21	770	0	ENST00000401558.2:c.3082G>T	p.Glu1028Ter	p.E1028*	ENST00000401558	NM_003400.3	1028	Gaa/Taa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165233	47165233	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	56	744	0	ENST00000409792.3:c.893T>C	p.Ile298Thr	p.I298T	ENST00000409792	NM_014159.6	298	aTt/aCt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185165702	185165702	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	32	579	0	ENST00000265026.3:c.977G>C	p.Arg326Pro	p.R326P	ENST00000265026	NM_004721.4	326	cGg/cCg																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383891	84383891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	43	1187	0	ENST00000321945.7:c.961G>T	p.Asp321Tyr	p.D321Y	ENST00000321945	NM_139076.2	321	Gac/Tac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040958	47040977	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTCGCGCCCAGCCTGGTG	CTCTCGCGCCCAGCCTGGTG	-			P-0032292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	81	743	0	ENST00000329236.7:c.1256_1275del	p.Ser419CysfsTer14	p.S419Cfs*14	ENST00000329236	NM_001204466.1	418	ttCTCTCGCGCCCAGCCTGGTGct/ttct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0032345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	126	434	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241711	55241711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	128	442	0	ENST00000275493.2:c.2159C>T	p.Ser720Phe	p.S720F	ENST00000275493	NM_005228.3	720	tCc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0032902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	103	378	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088723	27088723	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	77	446	0	ENST00000324856.7:c.2332G>T	p.Gly778Ter	p.G778*	ENST00000324856	NM_006015.4	778	Gga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108121619	108121619	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	66	402	0	ENST00000278616.4:c.1430del	p.Lys477SerfsTer5	p.K477Sfs*5	ENST00000278616	NM_000051.3	476	cAa/ca																																																																															
WT1	7490	MSKCC	GRCh37	11	32456268	32456268	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs775333473		P-0032902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	74	500	0	ENST00000332351.3:c.624C>A	p.Ser208Arg	p.S208R	ENST00000332351	NM_024426.4	208	agC/agA																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427425	427425	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	49	494	0	ENST00000399788.2:c.2744A>T	p.Gln915Leu	p.Q915L	ENST00000399788	NM_001042603.1	915	cAa/cTa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170477	11170477	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	88	452	0	ENST00000344626.4:c.4684C>T	p.Gln1562Ter	p.Q1562*	ENST00000344626	NM_003072.3	1562	Cag/Tag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509086	106509086	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	61	368	1	ENST00000359195.3:c.1080G>T	p.Lys360Asn	p.K360N	ENST00000359195	NM_002649.2	360	aaG/aaT																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981484	70981484	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	45	612	0	ENST00000276594.2:c.612C>A	p.Phe204Leu	p.F204L	ENST00000276594	NM_024504.3	204	ttC/ttA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0033569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	641	665	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18534717	18534717	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	214	412	0	ENST00000266497.5:c.1775C>G	p.Ser592Cys	p.S592C	ENST00000266497		592	tCt/tGt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001245	150001245	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	160	558	0	ENST00000253339.5:c.2359G>C	p.Gly787Arg	p.G787R	ENST00000253339		787	Ggg/Cgg																																																																															
NF2	4771	MSKCC	GRCh37	22	30050644	30050644	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0033569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	367	324	1	ENST00000338641.4:c.448-2A>G		p.X150_splice	ENST00000338641	NM_000268.3	150																																																																																
TET1	80312	MSKCC	GRCh37	10	70412311	70412311	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	111	261	0	ENST00000373644.4:c.4421A>T	p.Lys1474Ile	p.K1474I	ENST00000373644	NM_030625.2	1474	aAa/aTa																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625392	69625392	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	332	720	0	ENST00000334134.2:c.401A>G	p.Tyr134Cys	p.Y134C	ENST00000334134	NM_005247.2	134	tAc/tGc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038864	12038864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	52	211	0	ENST00000396373.4:c.1157G>A	p.Arg386Lys	p.R386K	ENST00000396373	NM_001987.4	386	aGa/aAa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2108783	2108783	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	393	770	0	ENST00000219476.3:c.884C>A	p.Ala295Asp	p.A295D	ENST00000219476	NM_000548.3	295	gCc/gAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638659	176638659	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	314	612	0	ENST00000439151.2:c.3261del	p.Glu1088ArgfsTer6	p.E1088Rfs*6	ENST00000439151	NM_022455.4	1087	Aaa/aa																																																																															
LYN	4067	MSKCC	GRCh37	8	56864634	56864634	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	93	536	0	ENST00000519728.1:c.597C>G	p.Ile199Met	p.I199M	ENST00000519728	NM_002350.3	199	atC/atG																																																																															
RAD21	5885	MSKCC	GRCh37	8	117874144	117874144	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	113	413	0	ENST00000297338.2:c.310G>C	p.Ala104Pro	p.A104P	ENST00000297338	NM_006265.2	104	Gct/Cct																																																																															
AGO2	27161	MSKCC	GRCh37	8	141572649	141572649	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	296	464	1	ENST00000220592.5:c.421C>T	p.Gln141Ter	p.Q141*	ENST00000220592	NM_012154.3	141	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0033781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	33	403	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0033781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	21	574	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175769	176175774	+	inframe_deletion	In_Frame_Del	DEL	GGAGAG	GGAGAG	-			P-0033979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	30	388	0	ENST00000367669.3:c.341_346del	p.Pro114_Leu115del	p.P114_L115del	ENST00000367669	NM_022457.5	114	cCTCTCCtc/ctc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0034062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	959	359	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0034062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	220	658	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238758086		P-0034062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	210	659	0	ENST00000358026.2:c.2729C>T	p.Thr910Met	p.T910M	ENST00000358026	NM_001128849.1	910	aCg/aTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29552152	29552152	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199474738		P-0034062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	26	260	0	ENST00000358273.4:c.1885G>A	p.Gly629Arg	p.G629R	ENST00000358273	NM_001042492.2	629	Ggg/Agg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589591	67589592	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATA			P-0034062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	28	212	0	ENST00000274335.5:c.1356_1358dup	p.Asn453dup	p.N453dup	ENST00000274335		453	tat/tATAat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0034125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	84	320	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221243	1221243	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1057520606		P-0034125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	102	415	1	ENST00000326873.7:c.766G>T	p.Glu256Ter	p.E256*	ENST00000326873	NM_000455.4	256	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0034130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	35	490	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662224	227662224	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	31	575	1	ENST00000305123.5:c.1231C>T	p.Arg411Ter	p.R411*	ENST00000305123	NM_005544.2	411	Cga/Tga																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519920		P-0034130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	17	288	0	ENST00000397062.3:c.85G>A	p.Asp29Asn	p.D29N	ENST00000397062	NM_006164.4	29	Gat/Aat																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719187	190719187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	17	333	0	ENST00000441310.2:c.1189G>A	p.Asp397Asn	p.D397N	ENST00000441310	NM_000534.4	397	Gat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0034323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	65	570	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	11	374	0	ENST00000263967.3:c.3129G>C	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atC																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29207510	29207510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	53	468	2	ENST00000240100.2:c.286C>T	p.Arg96Cys	p.R96C	ENST00000240100	NM_001394.6	96	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	97	423	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220494	1220494	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519858		P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	158	611	0	ENST00000326873.7:c.587G>T	p.Gly196Val	p.G196V	ENST00000326873	NM_000455.4	196	gGc/gTc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562870	21562870	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1047262994		P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	86	632	0	ENST00000382592.4:c.1049C>T	p.Pro350Leu	p.P350L	ENST00000382592	NM_014572.2	350	cCc/cTc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156541	55156541	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368266633		P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	174	464	0	ENST00000257290.5:c.2942G>A	p.Arg981His	p.R981H	ENST00000257290	NM_006206.4	981	cGt/cAt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206651135	206651135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	183	603	0	ENST00000367120.3:c.745G>T	p.Ala249Ser	p.A249S	ENST00000367120	NM_014002.3	249	Gcc/Tcc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483892	88483892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	81	602	0	ENST00000360948.2:c.1678C>T	p.Leu560Phe	p.L560F	ENST00000360948	NM_001012338.2	560	Ctc/Ttc																																																																															
ATM	472	MSKCC	GRCh37	11	108205780	108205780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	59	340	0	ENST00000278616.4:c.8095C>T	p.Pro2699Ser	p.P2699S	ENST00000278616	NM_000051.3	2699	Cca/Tca																																																																															
ATM	472	MSKCC	GRCh37	11	108213948	108213948	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	29	231	1	ENST00000278616.4:c.8269-1G>T		p.X2757_splice	ENST00000278616	NM_000051.3	2757																																																																																
LATS2	26524	MSKCC	GRCh37	13	21563023	21563023	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	119	590	1	ENST00000382592.4:c.896G>T	p.Gly299Val	p.G299V	ENST00000382592	NM_014572.2	299	gGc/gTc																																																																															
ALK	238	MSKCC	GRCh37	2	29443649	29443649	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs747661585		P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	204	506	0	ENST00000389048.3:c.3568C>A	p.Leu1190Met	p.L1190M	ENST00000389048	NM_004304.4	1190	Ctg/Atg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134825432	134825432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	81	403	0	ENST00000398015.3:c.948A>C	p.Glu316Asp	p.E316D	ENST00000398015	NM_004441.4	316	gaA/gaC																																																																															
KDR	3791	MSKCC	GRCh37	4	55948752	55948753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	121	528	0	ENST00000263923.4:c.3712dup	p.Thr1238AsnfsTer3	p.T1238Nfs*3	ENST00000263923	NM_002253.2	1238	aca/aAca																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149439365	149439365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	99	623	0	ENST00000286301.3:c.2030G>A	p.Arg677Lys	p.R677K	ENST00000286301	NM_005211.3	677	aGg/aAg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099502	157099502	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1256347904		P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	51	217	0	ENST00000346085.5:c.439G>T	p.Ala147Ser	p.A147S	ENST00000346085	NM_020732.3	147	Gcg/Tcg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371681	55371681	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	163	559	0	ENST00000297316.4:c.371T>A	p.Leu124Gln	p.L124Q	ENST00000297316	NM_022454.3	124	cTg/cAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518235	8518235	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs765808310		P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	102	314	0	ENST00000356435.5:c.1156T>C	p.Tyr386His	p.Y386H	ENST00000356435		386	Tac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	166	522	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	57	186	1	ENST00000257430.4:c.3919dup	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	151	509	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264066389		P-0034861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	91	344	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910880	114910881	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0034861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	95	318	0	ENST00000543371.1:c.999_1000del	p.Ser334LysfsTer21	p.S334Kfs*21	ENST00000543371	NM_001198531.1	333	agTTca/agca																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061531	38061538	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCGGCT	GCGCGGCT	-			P-0034861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	73	324	0	ENST00000250448.2:c.451_458del	p.Ser151GlyfsTer73	p.S151Gfs*73	ENST00000250448	NM_004496.3	151	AGCCGCGCg/g																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2185888	2185888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	131	477	0	ENST00000398665.3:c.160G>T	p.Ala54Ser	p.A54S	ENST00000398665	NM_032482.2	54	Gct/Tct																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713867	30713867	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	118	434	0	ENST00000359013.4:c.1267T>A	p.Phe423Ile	p.F423I	ENST00000359013	NM_001024847.2	423	Ttt/Att																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468452	89468452	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	95	214	0	ENST00000336596.2:c.1986G>T	p.Lys662Asn	p.K662N	ENST00000336596	NM_005233.5	662	aaG/aaT																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671913	30671913	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	153	559	0	ENST00000376406.3:c.5047A>C	p.Thr1683Pro	p.T1683P	ENST00000376406	NM_014641.2	1683	Aca/Cca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0035792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	531	718	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879604	37879604	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1196929947		P-0035792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	655	715	2	ENST00000269571.5:c.1979G>A	p.Gly660Asp	p.G660D	ENST00000269571		660	gGc/gAc																																																																															
AKT2	208	MSKCC	GRCh37	19	40747938	40747938	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1384	881	769	0	ENST00000392038.2:c.480G>T	p.Lys160Asn	p.K160N	ENST00000392038	NM_001626.4	160	aaG/aaT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249007	55249008	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGACAGCA			P-0035792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	406	516	0	ENST00000275493.2:c.2311_2312insGCATGGACA	p.Asp770_Asn771insSerMetAsp	p.D770_N771insSMD	ENST00000275493	NM_005228.3	769	gtg/gTGGACAGCAtg																																																																															
CD274	29126	MSKCC	GRCh37	9	5462965	5462965	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	68	277	0	ENST00000381577.3:c.526A>T	p.Ser176Cys	p.S176C	ENST00000381577	NM_014143.3	176	Agt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0036281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	79	439	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600382	10600382	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	295	663	0	ENST00000171111.5:c.1473C>A	p.Tyr491Ter	p.Y491*	ENST00000171111	NM_203500.1	491	taC/taA																																																																															
CENPA	1058	MSKCC	GRCh37	2	27009108	27009108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	45	125	0	ENST00000335756.4:c.44G>A	p.Arg15Lys	p.R15K	ENST00000335756	NM_001809.3	15	aGg/aAg																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281279	49281279	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	137	738	0	ENST00000282018.3:c.326T>A	p.Leu109Gln	p.L109Q	ENST00000282018	NM_020377.2	109	cTg/cAg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40865364	40865364	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs776879514		P-0036281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	124	594	0	ENST00000428826.2:c.1067A>G	p.Lys356Arg	p.K356R	ENST00000428826		356	aAg/aGg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11106975	11106975	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	222	542	0	ENST00000344626.4:c.1680C>A	p.Tyr560Ter	p.Y560*	ENST00000344626	NM_003072.3	560	taC/taA																																																																															
ATR	545	MSKCC	GRCh37	3	142180928	142180928	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0036281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	66	298	0	ENST00000350721.4:c.7046T>G	p.Leu2349Ter	p.L2349*	ENST00000350721	NM_001184.3	2349	tTa/tGa																																																																															
ATRX	546	MSKCC	GRCh37	X	76938516	76938516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	72	565	0	ENST00000373344.5:c.2232G>A	p.Met744Ile	p.M744I	ENST00000373344	NM_000489.3	744	atG/atA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	65	493	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	101	287	1				ENST00000310581	NM_198253.2																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	24	368	1	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934573		P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	101	549	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057988	27057988	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	51	557	0	ENST00000324856.7:c.1696C>T	p.Gln566Ter	p.Q566*	ENST00000324856	NM_006015.4	566	Cag/Tag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682381	37682381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	40	530	0	ENST00000447079.4:c.3572C>T	p.Ser1191Leu	p.S1191L	ENST00000447079	NM_015083.1	1191	tCa/tTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398220	25398220	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	89	409	0	ENST00000256078.4:c.99T>A	p.Asp33Glu	p.D33E	ENST00000256078	NM_033360.2	33	gaT/gaA																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022238	31022238	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs747847938		P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	22	240	0	ENST00000375687.4:c.1723C>T	p.Gln575Ter	p.Q575*	ENST00000375687	NM_015338.5	575	Caa/Taa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737350	145737350	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs35101495		P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1300	69	761	0	ENST00000428558.2:c.3337G>C	p.Gly1113Arg	p.G1113R	ENST00000428558	NM_004260.3	1113	Ggg/Cgg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28895689	28895689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	109	508	0	ENST00000282397.4:c.3085C>T	p.Leu1029Phe	p.L1029F	ENST00000282397	NM_002019.4	1029	Ctt/Ttt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31394052	31394052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	46	371	1	ENST00000328111.2:c.2339C>T	p.Ser780Leu	p.S780L	ENST00000328111	NM_006892.3	780	tCg/tTg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278101	18278101	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1056224197		P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	115	641	1	ENST00000222254.8:c.1721G>A	p.Arg574Gln	p.R574Q	ENST00000222254	NM_005027.3	574	cGa/cAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057874	27057874	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	71	676	0	ENST00000324856.7:c.1582C>G	p.Gln528Glu	p.Q528E	ENST00000324856	NM_006015.4	528	Cag/Gag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462990	120462990	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	89	501	0	ENST00000256646.2:c.5341G>C	p.Asp1781His	p.D1781H	ENST00000256646	NM_024408.3	1781	Gat/Cat																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819179	3819179	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	64	444	0	ENST00000262367.5:c.3056C>G	p.Ser1019Cys	p.S1019C	ENST00000262367	NM_004380.2	1019	tCt/tGt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475130	40475130	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193922720		P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	54	576	0	ENST00000264657.5:c.1780G>A	p.Glu594Lys	p.E594K	ENST00000264657	NM_139276.2	594	Gag/Aag																																																																															
EZH1	2145	MSKCC	GRCh37	17	40871125	40871125	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	41	435	0	ENST00000428826.2:c.765G>C	p.Glu255Asp	p.E255D	ENST00000428826		255	gaG/gaC																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216637	2216637	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1318769899		P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	61	706	0	ENST00000398665.3:c.2281G>C	p.Glu761Gln	p.E761Q	ENST00000398665	NM_032482.2	761	Gag/Cag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163282	32163282	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1310	193	794	0	ENST00000375023.3:c.5944C>T	p.Gln1982Ter	p.Q1982*	ENST00000375023	NM_004557.3	1982	Caa/Taa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6035217	6035217	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782898		P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	93	400	0	ENST00000265849.7:c.851C>T	p.Ser284Leu	p.S284L	ENST00000265849	NM_000535.5	284	tCa/tTa																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346431	152346431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	59	412	0	ENST00000359321.1:c.139C>T	p.His47Tyr	p.H47Y	ENST00000359321	NM_005431.1	47	Cat/Tat																																																																															
LYN	4067	MSKCC	GRCh37	8	56882350	56882350	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	79	571	0	ENST00000519728.1:c.1048C>T	p.Gln350Ter	p.Q350*	ENST00000519728	NM_002350.3	350	Cag/Tag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98240351	98240351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	77	383	0	ENST00000331920.6:c.1333G>T	p.Gly445Cys	p.G445C	ENST00000331920	NM_000264.3	445	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764146326		P-0036792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	539	777	1	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242442	55242443	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTAAAATTCCCGTCGCTA			P-0036792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1434	1775	462	2	ENST00000275493.2:c.2214_2231dup	p.Ile740_Lys745dup	p.I740_K745dup	ENST00000275493	NM_005228.3	740	gtt/gTTAAAATTCCCGTCGCTAtt																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200617	67200617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	195	705	3	ENST00000312629.5:c.728G>A	p.Arg243His	p.R243H	ENST00000312629	NM_003952.2	243	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0036915-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			423	123	578	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717609	89717609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C	rs876661024		P-0036915-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			333	125	374	0	ENST00000371953.3:c.635-1G>C		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																																
RBM10	8241	MSKCC	GRCh37	X	47028883	47028883	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036915-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			743	110	693	0	ENST00000329236.7:c.187G>T	p.Glu63Ter	p.E63*	ENST00000329236	NM_001204466.1	63	Gag/Tag																																																																															
MAX	4149	MSKCC	GRCh37	14	65569015	65569036	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACTCACGTCGCTCTCCACCTC	GACTCACGTCGCTCTCCACCTC	-			P-0036915-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			636	86	540	0	ENST00000358664.4:c.22_36+7del		p.X8_splice	ENST00000358664	NM_002382.4	8																																																																																
RB1	5925	MSKCC	GRCh37	13	48955452	48955452	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0036915-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			304	91	350	0	ENST00000267163.4:c.1568T>G	p.Leu523Ter	p.L523*	ENST00000267163	NM_000321.2	523	tTa/tGa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0036932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	144	524	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
EP300	2033	MSKCC	GRCh37	22	41527627	41527627	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	94	339	0	ENST00000263253.7:c.1518G>T	p.Met506Ile	p.M506I	ENST00000263253	NM_001429.3	506	atG/atT																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800869	120800869	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	133	730	0	ENST00000257552.2:c.379C>T	p.Gln127Ter	p.Q127*	ENST00000257552	NM_002442.3	127	Caa/Taa																																																																															
POLE	5426	MSKCC	GRCh37	12	133257231	133257231	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	164	701	0	ENST00000320574.5:c.247G>C	p.Asp83His	p.D83H	ENST00000320574	NM_006231.2	83	Gat/Cat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929403	32929404	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0037031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	173	735	0	ENST00000380152.3:c.7414_7415del	p.Lys2472ValfsTer2	p.K2472Vfs*2	ENST00000380152		2471	acAAag/acag																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023345	33023345	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	170	809	0	ENST00000300177.4:c.454A>G	p.Met152Val	p.M152V	ENST00000300177	NM_001191322.1	152	Atg/Gtg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169150	32169150	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1341686766		P-0037031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	119	666	0	ENST00000375023.3:c.3883C>A	p.Pro1295Thr	p.P1295T	ENST00000375023	NM_004557.3	1295	Ccc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	51	385	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	392	560	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608282	28608282	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773466203		P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	98	470	2	ENST00000241453.7:c.1774G>A	p.Val592Ile	p.V592I	ENST00000241453	NM_004119.2	592	Gtt/Att																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097630	27097630	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	224	359	0	ENST00000324856.7:c.3219G>A	p.Trp1073Ter	p.W1073*	ENST00000324856	NM_006015.4	1073	tgG/tgA																																																																															
TERT	7015	MSKCC	GRCh37	5	1279524	1279524	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774381540		P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	125	570	0	ENST00000310581.5:c.2012G>A	p.Arg671Gln	p.R671Q	ENST00000310581	NM_198253.2	671	cGg/cAg																																																																															
BLM	641	MSKCC	GRCh37	15	91295106	91295106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	38	381	1	ENST00000355112.3:c.889G>A	p.Asp297Asn	p.D297N	ENST00000355112	NM_000057.2	297	Gat/Aat																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198270187	198270187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	55	256	0	ENST00000335508.6:c.1249C>T	p.Pro417Ser	p.P417S	ENST00000335508	NM_012433.2	417	Cct/Tct																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260782	16260782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	236	406	0	ENST00000375759.3:c.8047G>T	p.Val2683Leu	p.V2683L	ENST00000375759	NM_015001.2	2683	Gtg/Ttg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72163822	72163822	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	20	269	0	ENST00000357731.5:c.536C>A	p.Ala179Glu	p.A179E	ENST00000357731	NM_173808.2	179	gCa/gAa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865136	57865136	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	421	657	0	ENST00000228682.2:c.2613T>A	p.Asp871Glu	p.D871E	ENST00000228682	NM_005269.2	871	gaT/gaA																																																																															
FLT3	2322	MSKCC	GRCh37	13	28597579	28597579	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1268548071		P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	61	558	0	ENST00000241453.7:c.2326G>A	p.Glu776Lys	p.E776K	ENST00000241453	NM_004119.2	776	Gaa/Aaa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678455	88678455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	234	532	0	ENST00000360948.2:c.1081G>C	p.Gly361Arg	p.G361R	ENST00000360948	NM_001012338.2	361	Ggc/Cgc																																																																															
NF1	4763	MSKCC	GRCh37	17	29586097	29586115	+	frameshift_variant	Frame_Shift_Del	DEL	TATGCGGCCTTTCAATGAT	TATGCGGCCTTTCAATGAT	-			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	37	469	0	ENST00000358273.4:c.4381_4399del	p.Met1461LeufsTer2	p.M1461Lfs*2	ENST00000358273	NM_001042492.2	1460	caTATGCGGCCTTTCAATGAT/ca																																																																															
MALT1	10892	MSKCC	GRCh37	18	56412949	56412949	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	60	353	0	ENST00000348428.3:c.1963G>T	p.Gly655Cys	p.G655C	ENST00000348428	NM_006785.3	655	Ggc/Tgc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728826	190728826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	31	356	0	ENST00000441310.2:c.2214G>A	p.Met738Ile	p.M738I	ENST00000441310	NM_000534.4	738	atG/atA																																																																															
BARD1	580	MSKCC	GRCh37	2	215632319	215632322	+	frameshift_variant	Frame_Shift_Del	DEL	TGCC	TGCC	-			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	209	433	0	ENST00000260947.4:c.1452_1455del	p.Lys484AsnfsTer3	p.K484Nfs*3	ENST00000260947	NM_000465.2	484	aaGGCA/aa																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794824	242794824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	265	440	0	ENST00000334409.5:c.385G>A	p.Ala129Thr	p.A129T	ENST00000334409	NM_005018.2	129	Gcc/Acc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468453	89468453	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	41	238	0	ENST00000336596.2:c.1987C>A	p.Gln663Lys	p.Q663K	ENST00000336596	NM_005233.5	663	Cag/Aag																																																																															
TET2	54790	MSKCC	GRCh37	4	106157903	106157903	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775589418		P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	216	277	0	ENST00000380013.4:c.2804G>A	p.Gly935Glu	p.G935E	ENST00000380013	NM_001127208.2	935	gGa/gAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874118	151874118	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	72	530	0	ENST00000262189.6:c.8420C>G	p.Ser2807Cys	p.S2807C	ENST00000262189	NM_170606.2	2807	tCt/tGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151947941	151947941	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	45	416	0	ENST00000262189.6:c.1732G>C	p.Asp578His	p.D578H	ENST00000262189	NM_170606.2	578	Gat/Cat																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371626	55371626	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	435	404	0	ENST00000297316.4:c.316T>A	p.Trp106Arg	p.W106R	ENST00000297316	NM_022454.3	106	Tgg/Agg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117875449	117875449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	38	440	0	ENST00000297338.2:c.194G>T	p.Arg65Leu	p.R65L	ENST00000297338	NM_006265.2	65	cGa/cTa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740600	145740600	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs587778654		P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1693	423	508	0	ENST00000428558.2:c.1417C>G	p.Leu473Val	p.L473V	ENST00000428558	NM_004260.3	473	Ctg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	180	552	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143350344	143350344	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	32	257	0	ENST00000262992.4:c.118C>T	p.Gln40Ter	p.Q40*	ENST00000262992	NM_001101669.1	40	Cag/Tag																																																																															
PGR	5241	MSKCC	GRCh37	11	100962554	100962554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	109	609	0	ENST00000325455.5:c.1843C>A	p.Arg615Ser	p.R615S	ENST00000325455	NM_001202474.3	615	Cgc/Agc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281035	49281035	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	98	672	0	ENST00000282018.3:c.82A>T	p.Ser28Cys	p.S28C	ENST00000282018	NM_020377.2	28	Agc/Tgc																																																																															
MAX	4149	MSKCC	GRCh37	14	65544726	65544726	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	86	655	0	ENST00000358664.4:c.200C>G	p.Ala67Gly	p.A67G	ENST00000358664	NM_002382.4	67	gCc/gGc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024552	31024552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	128	673	0	ENST00000375687.4:c.4037C>T	p.Ser1346Phe	p.S1346F	ENST00000375687	NM_015338.5	1346	tCt/tTt																																																																															
APC	324	MSKCC	GRCh37	5	112102988	112102988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	89	479	4	ENST00000257430.4:c.323G>T	p.Gly108Val	p.G108V	ENST00000257430	NM_000038.5	108	gGa/gTa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508963	106508963	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	64	412	0	ENST00000359195.3:c.957G>T	p.Arg319Ser	p.R319S	ENST00000359195	NM_002649.2	319	agG/agT																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5563181	5563182	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	63	447	0	ENST00000397747.3:c.787dup	p.Thr263AsnfsTer21	p.T263Nfs*21	ENST00000397747	NM_025239.3	262	-/A																																																																															
ABL1	25	MSKCC	GRCh37	9	133759812	133759812	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs766513552		P-0037197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	126	622	0	ENST00000318560.5:c.2135G>T	p.Arg712Leu	p.R712L	ENST00000318560	NM_005157.4	712	cGc/cTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28929495		P-0037235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	123	409	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0037235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	110	332	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0037235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	175	305	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
TET1	80312	MSKCC	GRCh37	10	70426931	70426931	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	61	362	0	ENST00000373644.4:c.4591G>T	p.Asp1531Tyr	p.D1531Y	ENST00000373644	NM_030625.2	1531	Gac/Tac																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252963	36252963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	92	327	0	ENST00000300305.3:c.399G>T	p.Met133Ile	p.M133I	ENST00000300305		133	atG/atT																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259647	89259647	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	54	257	0	ENST00000336596.2:c.791A>T	p.Glu264Val	p.E264V	ENST00000336596	NM_005233.5	264	gAa/gTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629954	187629954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	138	567	1	ENST00000441802.2:c.1028C>T	p.Thr343Ile	p.T343I	ENST00000441802	NM_005245.3	343	aCt/aTt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515579	31515579	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1405504265		P-0037235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	65	257	0	ENST00000344624.3:c.1040C>T	p.Pro347Leu	p.P347L	ENST00000344624		347	cCc/cTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040716	47040716	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	127	533	0	ENST00000329236.7:c.1117G>T	p.Glu373Ter	p.E373*	ENST00000329236	NM_001204466.1	373	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	349	627	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524543	176524543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	309	730	0	ENST00000292408.4:c.2275C>A	p.Leu759Met	p.L759M	ENST00000292408	NM_213647.1	759	Ctg/Atg																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699217	117699217	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	203	408	0	ENST00000369458.3:c.424A>G	p.Asn142Asp	p.N142D	ENST00000369458	NM_024626.3	142	Aac/Gac																																																																															
MTOR	2475	MSKCC	GRCh37	1	11319317	11319317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	189	581	0	ENST00000361445.4:c.150G>T	p.Met50Ile	p.M50I	ENST00000361445	NM_004958.3	50	atG/atT																																																																															
MPL	4352	MSKCC	GRCh37	1	43814550	43814550	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	812	362	0	ENST00000372470.3:c.1345C>G	p.Leu449Val	p.L449V	ENST00000372470	NM_005373.2	449	Ctg/Gtg																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112767302	112767302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	112	519	0	ENST00000369452.4:c.1175C>T	p.Thr392Ile	p.T392I	ENST00000369452	NM_007373.3	392	aCa/aTa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30108083	30108083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	308	491	0	ENST00000331968.5:c.724G>A	p.Gly242Ser	p.G242S	ENST00000331968	NM_002742.2	242	Ggt/Agt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81558909	81558909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	196	477	0	ENST00000298171.2:c.502C>A	p.Pro168Thr	p.P168T	ENST00000298171	NM_000369.2	168	Cct/Act																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15971220	15971220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	160	403	0	ENST00000268712.3:c.4729G>T	p.Ala1577Ser	p.A1577S	ENST00000268712	NM_006311.3	1577	Gct/Tct																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78938122	78938122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	189	498	1	ENST00000306801.3:c.4000G>A	p.Val1334Ile	p.V1334I	ENST00000306801	NM_020761.2	1334	Gtc/Atc																																																																															
ALK	238	MSKCC	GRCh37	2	29917770	29917770	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	208	611	1	ENST00000389048.3:c.898C>A	p.Gln300Lys	p.Q300K	ENST00000389048	NM_004304.4	300	Cag/Aag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024392	31024392	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	360	588	1	ENST00000375687.4:c.3877G>T	p.Asp1293Tyr	p.D1293Y	ENST00000375687	NM_015338.5	1293	Gat/Tat																																																																															
ATR	545	MSKCC	GRCh37	3	142204075	142204075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	444	600	0	ENST00000350721.4:c.6128C>T	p.Ala2043Val	p.A2043V	ENST00000350721	NM_001184.3	2043	gCc/gTc																																																																															
TP63	8626	MSKCC	GRCh37	3	189612166	189612166	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	413	528	0	ENST00000264731.3:c.1918G>C	p.Asp640His	p.D640H	ENST00000264731	NM_003722.4	640	Gat/Cat																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356171	66356171	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	269	615	0	ENST00000273854.3:c.1326G>T	p.Glu442Asp	p.E442D	ENST00000273854	NM_004439.5	442	gaG/gaT																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143033817	143033817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	159	398	0	ENST00000262992.4:c.2154G>T	p.Glu718Asp	p.E718D	ENST00000262992	NM_001101669.1	718	gaG/gaT																																																																															
SMO	6608	MSKCC	GRCh37	7	128851950	128851950	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1289445585		P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	258	596	0	ENST00000249373.3:c.2022G>C	p.Lys674Asn	p.K674N	ENST00000249373	NM_005631.4	674	aaG/aaC																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8492882	8492882	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	142	549	0	ENST00000356435.5:c.2447T>C	p.Leu816Pro	p.L816P	ENST00000356435		816	cTg/cCg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006896	47006896	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	83	605	0	ENST00000329236.7:c.16C>T	p.Arg6Cys	p.R6C	ENST00000329236	NM_001204466.1	6	Cgt/Tgt																																																																															
MED12	9968	MSKCC	GRCh37	X	70347963	70347963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	70	523	0	ENST00000374080.3:c.3202C>A	p.Pro1068Thr	p.P1068T	ENST00000374080		1068	Ccc/Acc																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96930956	96931040	+	protein_altering_variant	In_Frame_Del	DEL	TGCAACCAGGCGGGCTCGGCGAGGGCAGTGCACAGCGCCGTGATAGACAGGGCGCCAGGCAGGGCCGAGGCCAGGCTACGCTCCG	TGCAACCAGGCGGGCTCGGCGAGGGCAGTGCACAGCGCCGTGATAGACAGGGCGCCAGGCAGGGCCGAGGCCAGGCTACGCTCCG	A			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	146	560	0	ENST00000258439.3:c.80_164delinsT	p.Pro27_His55delinsLeu	p.P27_H55delinsL	ENST00000258439	NM_001193304.2	27	cCGGAGCGTAGCCTGGCCTCGGCCCTGCCTGGCGCCCTGTCTATCACGGCGCTGTGCACTGCCCTCGCCGAGCCCGCCTGGTTGCAc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	25	420	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PAK1	5058	MSKCC	GRCh37	11	77043912	77043912	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0037297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	441	702	0	ENST00000356341.3:c.1414G>T	p.Ala472Ser	p.A472S	ENST00000356341	NM_002576.4	472	Gcc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	213	617	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632402	3632402	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750340019		P-0037297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	324	1030	1	ENST00000294008.3:c.5446G>A	p.Glu1816Lys	p.E1816K	ENST00000294008	NM_032444.2	1816	Gag/Aag																																																																															
STK11	6794	MSKCC	GRCh37	19	1220703	1220704	+	missense_variant	Missense_Mutation	DNP	GC	GC	TA			P-0037297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	417	665	1	ENST00000326873.7:c.721_722delinsTA	p.Ala241Tyr	p.A241Y	ENST00000326873	NM_000455.4	241	GCt/TAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602637	10602644	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGGCTT	GTGGGCTT	-			P-0037297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	487	792	1	ENST00000171111.5:c.934_941del	p.Lys312AlafsTer35	p.K312Afs*35	ENST00000171111	NM_203500.1	312	AAGCCCACg/g																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427675	72427675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	365	550	0	ENST00000477973.2:c.813C>T	p.Ser272Phe	p.S272F	ENST00000477973	NM_012234.5	272	tCc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112174784	112174784	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	27	409	0	ENST00000257430.4:c.3493A>T	p.Lys1165Ter	p.K1165*	ENST00000257430	NM_000038.5	1165	Aaa/Taa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0037299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	31	510	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
ATM	472	MSKCC	GRCh37	11	108139302	108139302	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3218708		P-0037299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	50	836	1	ENST00000278616.4:c.2804C>T	p.Thr935Met	p.T935M	ENST00000278616	NM_000051.3	935	aCg/aTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214046	36214046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	65	901	2	ENST00000222270.7:c.2872G>A	p.Gly958Ser	p.G958S	ENST00000222270	NM_014727.1	958	Ggc/Agc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115263340	115263340	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0037299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	47	697	0	ENST00000438362.2:c.2012-2A>C		p.X671_splice	ENST00000438362	NM_001242891.1	671																																																																																
SOX9	6662	MSKCC	GRCh37	17	70119734	70119734	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	46	723	1	ENST00000245479.2:c.736C>T	p.Gln246Ter	p.Q246*	ENST00000245479	NM_000346.3	246	Cag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259278	89259278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	49	604	1	ENST00000336596.2:c.422C>A	p.Thr141Lys	p.T141K	ENST00000336596	NM_005233.5	141	aCa/aAa																																																																															
MET	4233	MSKCC	GRCh37	7	116412045	116412049	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TATAT	TATAT	-			P-0037320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	37	792	0	ENST00000397752.3:c.3028+3_3028+7del		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	136	391	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588933	67588933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	27	204	0	ENST00000274335.5:c.1024G>A	p.Glu342Lys	p.E342K	ENST00000274335		342	Gaa/Aaa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39537699	39537699	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	62	316	0	ENST00000262039.4:c.233A>G	p.Tyr78Cys	p.Y78C	ENST00000262039	NM_002647.2	78	tAc/tGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151932982	151932982	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs772146328		P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	17	34	0	ENST00000262189.6:c.2689C>T	p.Arg897Ter	p.R897*	ENST00000262189	NM_170606.2	897	Cga/Tga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32918769	32918769	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs730881550		P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	28	179	0	ENST00000380152.3:c.6916G>T	p.Ala2306Ser	p.A2306S	ENST00000380152		2306	Gct/Tct																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55138677	55138677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	86	374	0	ENST00000257290.5:c.1354G>C	p.Asp452His	p.D452H	ENST00000257290	NM_006206.4	452	Gat/Cat																																																																															
AKT3	10000	MSKCC	GRCh37	1	243778453	243778453	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	36	336	0	ENST00000263826.5:c.572C>G	p.Ala191Gly	p.A191G	ENST00000263826	NM_005465.4	191	gCa/gGa																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200626	67200626	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	210	607	0	ENST00000312629.5:c.737A>T	p.His246Leu	p.H246L	ENST00000312629	NM_003952.2	246	cAc/cTc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589847	69589848	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	10	21	0	ENST00000168712.1:c.5_6delinsTT	p.Ser2Phe	p.S2F	ENST00000168712	NM_002007.2	2	tCG/tTT																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911310	32911310	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs80358532		P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	70	395	0	ENST00000380152.3:c.2818C>T	p.Gln940Ter	p.Q940*	ENST00000380152		940	Caa/Taa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14038693	14038693	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587777943		P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	52	249	0	ENST00000311895.7:c.2017+1G>A		p.X673_splice	ENST00000311895	NM_005236.2	673																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72993425	72993425	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	310	705	0	ENST00000268489.5:c.620G>C	p.Trp207Ser	p.W207S	ENST00000268489	NM_006885.3	207	tGg/tCg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40872297	40872297	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1296856855		P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	168	577	0	ENST00000428826.2:c.658A>G	p.Ile220Val	p.I220V	ENST00000428826		220	Att/Gtt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288979	212288979	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	77	486	0	ENST00000342788.4:c.2767G>C	p.Gly923Arg	p.G923R	ENST00000342788	NM_005235.2	923	Gga/Cga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023963	31023963	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	209	534	0	ENST00000375687.4:c.3448G>T	p.Gly1150Ter	p.G1150*	ENST00000375687	NM_015338.5	1150	Gga/Tga																																																																															
EP300	2033	MSKCC	GRCh37	22	41568585	41568599	+	protein_altering_variant	In_Frame_Del	DEL	TTCTGGAAGAAAGCA	TTCTGGAAGAAAGCA	CTC			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	56	448	1	ENST00000263253.7:c.4535_4549delinsCTC	p.Val1512_Ile1517delinsAlaLeu	p.V1512_I1517delinsAL	ENST00000263253	NM_001429.3	1512	gTTCTGGAAGAAAGCAtt/gCTCtt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499412	89499412	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	67	385	0	ENST00000336596.2:c.2582G>A	p.Trp861Ter	p.W861*	ENST00000336596	NM_005233.5	861	tGg/tAg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499420	89499420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	71	411	0	ENST00000336596.2:c.2590G>A	p.Asp864Asn	p.D864N	ENST00000336596	NM_005233.5	864	Gac/Aac																																																																															
ATR	545	MSKCC	GRCh37	3	142241641	142241641	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	24	448	0	ENST00000350721.4:c.4195G>T	p.Glu1399Ter	p.E1399*	ENST00000350721	NM_001184.3	1399	Gag/Tag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217175	66217175	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	94	387	0	ENST00000273854.3:c.2440T>G	p.Cys814Gly	p.C814G	ENST00000273854	NM_004439.5	814	Tgc/Ggc																																																																															
PIM1	5292	MSKCC	GRCh37	6	37138389	37138389	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	112	392	0	ENST00000373509.5:c.38G>T	p.Arg13Leu	p.R13L	ENST00000373509	NM_002648.3	13	cGc/cTc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978652	70978652	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	139	600	0	ENST00000276594.2:c.1001C>A	p.Pro334His	p.P334H	ENST00000276594	NM_024504.3	334	cCc/cAc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570247	87570247	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	72	330	0	ENST00000277120.3:c.1987G>T	p.Glu663Ter	p.E663*	ENST00000277120		663	Gaa/Taa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209628	98209628	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	84	470	0	ENST00000331920.6:c.3910A>T	p.Arg1304Trp	p.R1304W	ENST00000331920	NM_000264.3	1304	Agg/Tgg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248205	110248205	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	66	320	0	ENST00000374672.4:c.1267G>T	p.Glu423Ter	p.E423*	ENST00000374672	NM_004235.4	423	Gag/Tag																																																																															
MED12	9968	MSKCC	GRCh37	X	70357595	70357608	+	frameshift_variant	Frame_Shift_Del	DEL	CTCATGTGGGATTG	CTCATGTGGGATTG	-			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	56	717	0	ENST00000374080.3:c.5847_5860del	p.His1950AlafsTer96	p.H1950Afs*96	ENST00000374080		1949	tCTCATGTGGGATTG/t																																																																															
TP53	7157	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	352	840	0	ENST00000269305.4:c.389T>G	p.Leu130Arg	p.L130R	ENST00000269305	NM_001126112.2	130	cTc/cGc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221084	5221084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371881792		P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	63	653	2	ENST00000357368.4:c.3382G>A	p.Val1128Ile	p.V1128I	ENST00000357368	NM_002850.3	1128	Gtc/Atc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115443	115115443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	264	649	0	ENST00000257566.3:c.883G>A	p.Asp295Asn	p.D295N	ENST00000257566	NM_016569.3	295	Gac/Aac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730919	40730919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	192	490	1	ENST00000373198.4:c.3616C>T	p.Pro1206Ser	p.P1206S	ENST00000373198	NM_133170.3	1206	Ccc/Tcc																																																																															
ALK	238	MSKCC	GRCh37	2	30142942	30142942	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1442742511		P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	153	784	1	ENST00000389048.3:c.584C>T	p.Ala195Val	p.A195V	ENST00000389048	NM_004304.4	195	gCg/gTg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933824	36933824	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	111	538	0	ENST00000361632.4:c.1577-2A>T		p.X526_splice	ENST00000361632		526																																																																																
PIK3C2G	5288	MSKCC	GRCh37	12	18439800	18439800	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	196	350	0	ENST00000266497.5:c.698A>T	p.Gln233Leu	p.Q233L	ENST00000266497		233	cAg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433955	49433955	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	229	730	0	ENST00000301067.7:c.7598C>G	p.Pro2533Arg	p.P2533R	ENST00000301067	NM_003482.3	2533	cCc/cGc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118767	115118767	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768160499		P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	251	632	0	ENST00000257566.3:c.574G>A	p.Ala192Thr	p.A192T	ENST00000257566	NM_016569.3	192	Gct/Act																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118925	115118925	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	77	309	0	ENST00000257566.3:c.416G>C	p.Arg139Thr	p.R139T	ENST00000257566	NM_016569.3	139	aGa/aCa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422071	81422071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	417	429	0	ENST00000298171.2:c.47C>A	p.Pro16His	p.P16H	ENST00000298171	NM_000369.2	16	cCc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	41961517	41961517	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	238	683	0	ENST00000219905.7:c.425G>T	p.Trp142Leu	p.W142L	ENST00000219905	NM_001164273.1	142	tGg/tTg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245112	41245112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	405	823	0	ENST00000357654.3:c.2436G>T	p.Lys812Asn	p.K812N	ENST00000357654	NM_007294.3	812	aaG/aaT																																																																															
YES1	7525	MSKCC	GRCh37	18	745856	745945	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCTGGGTGAAAAATAAATACTTTCACTATATCTTTCTCAAAATACTGCCCCAAGAAATTTTATACTTATACTAATATAACAATATTCAT	ACCTGGGTGAAAAATAAATACTTTCACTATATCTTTCTCAAAATACTGCCCCAAGAAATTTTATACTTATACTAATATAACAATATTCAT	-			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	76	525	0	ENST00000314574.4:c.574+3_576del		p.X192_splice	ENST00000314574	NM_005433.3	192																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11134261	11134262	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	338	566	1	ENST00000344626.4:c.2927_2928delinsCT	p.Leu976Ser	p.L976S	ENST00000344626	NM_003072.3	976	tTG/tCT																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298045	15298045	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	487	909	1	ENST00000263388.2:c.1711G>T	p.Ala571Ser	p.A571S	ENST00000263388	NM_000435.2	571	Gct/Tct																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463508	25463509	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	78	466	2	ENST00000264709.3:c.2173_2173+1delinsTT		p.X725_splice	ENST00000264709	NM_175629.2	725																																																																																
ASXL2	55252	MSKCC	GRCh37	2	25972641	25972641	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	224	482	0	ENST00000435504.4:c.1784A>T	p.Gln595Leu	p.Q595L	ENST00000435504		595	cAg/cTg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866303	42866303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	63	562	0	ENST00000398585.3:c.329C>T	p.Ser110Phe	p.S110F	ENST00000398585	NM_001135099.1	110	tCc/tTc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175889	24176325	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTACCCCTGGCCCTGTGGTCCTGGGCTCTGCCCACAGGCACCTGGCTTTCCAGGCAGAGGCAGGGCCATTGCCTTTCCCAGTCTCCCATGGTCTCTGAGACAGAGTACCTCTAGTGCTGCTAGAGGCAGGCAGGCTTCTGGGTGATAAGGCCCCATCCAAACGCCAGGGTATGTTTCCCTGCATGGAACAAACATAATTCCTCAGGCTGAGGGTCTGACCACAGCCCAGATCCAGGTTTTGGGGTCCCTGGAGTGATGAGCAGGGCCTGAGTGGCAGACAGGCGAGGCTGAGAGAAGGCTGGGTCTGACCCTGCTGGGGGCCCACATCCTGCCTCTGTTCCCACCCCTACACTTGGCTGCCCTGTAGAGCCTTGGGAAGGGCAGCGCCCAGGCTGGGAGCTGGCCCCGACTCATTGCCCTCCCCACTCCTCTTCC	AGGTACCCCTGGCCCTGTGGTCCTGGGCTCTGCCCACAGGCACCTGGCTTTCCAGGCAGAGGCAGGGCCATTGCCTTTCCCAGTCTCCCATGGTCTCTGAGACAGAGTACCTCTAGTGCTGCTAGAGGCAGGCAGGCTTCTGGGTGATAAGGCCCCATCCAAACGCCAGGGTATGTTTCCCTGCATGGAACAAACATAATTCCTCAGGCTGAGGGTCTGACCACAGCCCAGATCCAGGTTTTGGGGTCCCTGGAGTGATGAGCAGGGCCTGAGTGGCAGACAGGCGAGGCTGAGAGAAGGCTGGGTCTGACCCTGCTGGGGGCCCACATCCTGCCTCTGTTCCCACCCCTACACTTGGCTGCCCTGTAGAGCCTTGGGAAGGGCAGCGCCCAGGCTGGGAGCTGGCCCCGACTCATTGCCCTCCCCACTCCTCTTCC	-			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	126	388	0	ENST00000263121.7:c.1117_1119-3del		p.X373_splice	ENST00000263121	NM_003073.3	373																																																																																
EP300	2033	MSKCC	GRCh37	22	41521941	41521941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	272	579	0	ENST00000263253.7:c.803G>T	p.Ser268Ile	p.S268I	ENST00000263253	NM_001429.3	268	aGt/aTt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670852	134670852	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	167	378	0	ENST00000398015.3:c.763T>A	p.Cys255Ser	p.C255S	ENST00000398015	NM_004441.4	255	Tgc/Agc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549739	187549739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	216	455	0	ENST00000441802.2:c.4502G>T	p.Ser1501Ile	p.S1501I	ENST00000441802	NM_005245.3	1501	aGt/aTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629371	187629371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	153	662	0	ENST00000441802.2:c.1611G>T	p.Arg537Ser	p.R537S	ENST00000441802	NM_005245.3	537	agG/agT																																																																															
APC	324	MSKCC	GRCh37	5	112170733	112170733	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs756090401		P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	366	601	0	ENST00000257430.4:c.1829A>G	p.Asp610Gly	p.D610G	ENST00000257430	NM_000038.5	610	gAt/gGt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512494	149512494	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs41287112		P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	148	347	0	ENST00000261799.4:c.946G>T	p.Val316Leu	p.V316L	ENST00000261799	NM_002609.3	316	Gtg/Ttg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058749	180058749	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	248	651	0	ENST00000261937.6:c.88C>A	p.Pro30Thr	p.P30T	ENST00000261937	NM_182925.4	30	Ccg/Acg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679980	30679980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	222	537	0	ENST00000376406.3:c.1739A>G	p.Asp580Gly	p.D580G	ENST00000376406	NM_014641.2	580	gAt/gGt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680438	30680438	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	263	604	1	ENST00000376406.3:c.1281G>T	p.Trp427Cys	p.W427C	ENST00000376406	NM_014641.2	427	tgG/tgT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55231508	55231508	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	139	479	0	ENST00000275493.2:c.1714A>G	p.Thr572Ala	p.T572A	ENST00000275493	NM_005228.3	572	Aca/Gca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248993	55248993	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	225	520	0	ENST00000275493.2:c.2291A>T	p.Tyr764Phe	p.Y764F	ENST00000275493	NM_005228.3	764	tAc/tTc																																																																															
HGF	3082	MSKCC	GRCh37	7	81392150	81392150	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	196	363	0	ENST00000222390.5:c.127A>T	p.Lys43Ter	p.K43*	ENST00000222390	NM_000601.4	43	Aaa/Taa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372148	55372148	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	381	596	0	ENST00000297316.4:c.838G>T	p.Gly280Cys	p.G280C	ENST00000297316	NM_022454.3	280	Ggt/Tgt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68942864	68942864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	509	569	0	ENST00000288368.4:c.676G>C	p.Glu226Gln	p.E226Q	ENST00000288368	NM_024870.2	226	Gaa/Caa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68989636	68989636	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	104	479	0	ENST00000288368.4:c.1574A>T	p.Asp525Val	p.D525V	ENST00000288368	NM_024870.2	525	gAt/gTt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949988	44949988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	121	201	0	ENST00000377967.4:c.3757G>T	p.Val1253Leu	p.V1253L	ENST00000377967	NM_021140.2	1253	Gtg/Ttg																																																																															
MED12	9968	MSKCC	GRCh37	X	70340819	70340819	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	181	214	0	ENST00000374080.3:c.554-2A>G		p.X185_splice	ENST00000374080		185																																																																																
MEN1	4221	MSKCC	GRCh37	11	64572161	64572161	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	206	682	1	ENST00000337652.1:c.1493del	p.Pro498ArgfsTer66	p.P498Rfs*66	ENST00000337652	NM_130803.2	498	cCg/cg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226066	53226066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	258	874	0	ENST00000375401.3:c.2783C>T	p.Ala928Val	p.A928V	ENST00000375401	NM_004187.3	928	gCg/gTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210482	5210482	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs147647579		P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	160	573	0	ENST00000357368.4:c.5485C>T	p.Arg1829Trp	p.R1829W	ENST00000357368	NM_002850.3	1829	Cgg/Tgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602754	10602754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	301	893	0	ENST00000171111.5:c.824C>T	p.Ser275Leu	p.S275L	ENST00000171111	NM_203500.1	275	tCg/tTg																																																																															
RET	5979	MSKCC	GRCh37	10	43609105	43609105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1228204486		P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	113	746	0	ENST00000355710.3:c.1861G>A	p.Glu621Lys	p.E621K	ENST00000355710	NM_020975.4	621	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259043	16259043	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	81	481	1	ENST00000375759.3:c.6313del	p.Ala2105LeufsTer33	p.A2105Lfs*33	ENST00000375759	NM_015001.2	2103	aGg/ag																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020751	37020751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	98	531	0	ENST00000358127.4:c.94C>T	p.Pro32Ser	p.P32S	ENST00000358127	NM_001280556.1	32	Cca/Tca																																																																															
XPO1	7514	MSKCC	GRCh37	2	61709534	61709534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	177	374	0	ENST00000401558.2:c.2953G>A	p.Ala985Thr	p.A985T	ENST00000401558	NM_003400.3	985	Gcc/Acc																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36651978	36651979	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	257	717	0	ENST00000244741.5:c.102_103del	p.Cys34Ter	p.C34*	ENST00000244741	NM_000389.4	34	TGt/t																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106093	8106093	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	65	426	0	ENST00000346208.3:c.913C>T	p.Arg305Ter	p.R305*	ENST00000346208		305	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118391539	118391539	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782283493		P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	165	394	1	ENST00000534358.1:c.11452C>T	p.Pro3818Ser	p.P3818S	ENST00000534358	NM_005933.3	3818	Cca/Tca																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18649065	18649065	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	81	456	1	ENST00000266497.5:c.2744del	p.Asn915ThrfsTer24	p.N915Tfs*24	ENST00000266497		914	Aaa/aa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18715638	18715638	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G	rs752088371		P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	54	281	0	ENST00000266497.5:c.3469A>G	p.Lys1157Glu	p.K1157E	ENST00000266497		1157	Aaa/Gaa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246297	46246297	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770601353		P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	171	396	0	ENST00000334344.6:c.4391G>A	p.Arg1464His	p.R1464H	ENST00000334344	NM_152641.2	1464	cGc/cAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435914	110435914	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	95	726	1	ENST00000375856.3:c.2487del	p.Val830TrpfsTer36	p.V830Wfs*36	ENST00000375856	NM_003749.2	829	ccC/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830417	72830417	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144401383		P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	15	403	0	ENST00000268489.5:c.6164C>T	p.Pro2055Leu	p.P2055L	ENST00000268489	NM_006885.3	2055	cCg/cTg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484270	57484270	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	83	481	0	ENST00000371085.3:c.584A>G	p.Gln195Arg	p.Q195R	ENST00000371085	NM_000516.4	195	cAg/cGg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442498	52442498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	60	372	2	ENST00000460680.1:c.247G>A	p.Ala83Thr	p.A83T	ENST00000460680	NM_004656.3	83	Gcc/Acc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911522	134911522	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778136807		P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	175	528	0	ENST00000398015.3:c.1987C>T	p.Arg663Trp	p.R663W	ENST00000398015	NM_004441.4	663	Cgg/Tgg																																																																															
TET2	54790	MSKCC	GRCh37	4	106196846	106196846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	144	451	0	ENST00000380013.4:c.5179C>T	p.His1727Tyr	p.H1727Y	ENST00000380013	NM_001127208.2	1727	Cat/Tat																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449615	149449615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	73	651	0	ENST00000286301.3:c.1331C>A	p.Ala444Asp	p.A444D	ENST00000286301	NM_005211.3	444	gCc/gAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046674	180046674	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	87	846	0	ENST00000261937.6:c.2638del	p.Met880CysfsTer2	p.M880Cfs*2	ENST00000261937	NM_182925.4	880	Atg/tg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982050	93982050	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1232168679		P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	101	539	0	ENST00000369303.4:c.1415T>C	p.Val472Ala	p.V472A	ENST00000369303	NM_004440.3	472	gTc/gCc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069936	5069938	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs1216770146		P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	54	338	0	ENST00000381652.3:c.1527_1529del	p.Leu510del	p.L510del	ENST00000381652	NM_004972.3	509	CTT/-																																																																															
ATRX	546	MSKCC	GRCh37	X	76812920	76812920	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	97	699	0	ENST00000373344.5:c.6699+2T>C		p.X2233_splice	ENST00000373344	NM_000489.3	2233																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0037413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	47	490	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782177		P-0037413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	37	637	0	ENST00000269305.4:c.644G>A	p.Ser215Asn	p.S215N	ENST00000269305	NM_001126112.2	215	aGt/aAt																																																																															
XIAP	331	MSKCC	GRCh37	X	123020294	123020301	+	frameshift_variant	Frame_Shift_Del	DEL	CCATGGCA	CCATGGCA	-			P-0037413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	31	511	0	ENST00000355640.3:c.782_789del	p.Ser261Ter	p.S261*	ENST00000355640		261	tCCATGGCA/t																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	51	286	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0037459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	238	663	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0037459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	203	514	1	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125513776	125513776	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	53	538	0	ENST00000428830.2:c.904C>G	p.Pro302Ala	p.P302A	ENST00000428830	NM_001114121.2	302	Cca/Gca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249028	55249028	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1275022697		P-0037459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	156	473	0	ENST00000275493.2:c.2326C>T	p.Arg776Cys	p.R776C	ENST00000275493	NM_005228.3	776	Cgc/Tgc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464501	25464501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	155	570	2	ENST00000264709.3:c.2012C>T	p.Thr671Met	p.T671M	ENST00000264709	NM_175629.2	671	aCg/aTg																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588868	69588868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	49	573	3	ENST00000168712.1:c.368G>A	p.Arg123Gln	p.R123Q	ENST00000168712	NM_002007.2	123	cGg/cAg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117383	115117383	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1418098778		P-0037459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	126	404	0	ENST00000257566.3:c.791C>T	p.Pro264Leu	p.P264L	ENST00000257566	NM_016569.3	264	cCt/cTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48878176	48878196	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCTCGTCAGGTGAGCGAGCA	CTCTCGTCAGGTGAGCGAGCA	TGT			P-0037459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	13	90	1	ENST00000267163.4:c.128_137+11delinsTGT		p.X43_splice	ENST00000267163	NM_000321.2	43																																																																																
TSC2	7249	MSKCC	GRCh37	16	2133810	2133810	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs878854099		P-0037459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	65	442	0	ENST00000219476.3:c.3998A>G	p.Tyr1333Cys	p.Y1333C	ENST00000219476	NM_000548.3	1333	tAc/tGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55270220	55270220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	268	629	2	ENST00000275493.2:c.3173G>T	p.Cys1058Phe	p.C1058F	ENST00000275493	NM_005228.3	1058	tGt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577567	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	338	485	0	ENST00000269305.4:c.714dup	p.Asn239Ter	p.N239*	ENST00000269305	NM_001126112.2	238	-/T																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25471007	25471007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	85	554	0	ENST00000264709.3:c.754G>A	p.Asp252Asn	p.D252N	ENST00000264709	NM_175629.2	252	Gac/Aac																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680745	30680745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	140	532	0	ENST00000376406.3:c.974G>A	p.Gly325Asp	p.G325D	ENST00000376406	NM_014641.2	325	gGc/gAc																																																																															
MET	4233	MSKCC	GRCh37	7	116411982	116411991	+	missense_variant	Missense_Mutation	ONP	AAGCCCAACT	AAGCCCAACT	GGCAGTCCAA			P-0037497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	1034	653	2	ENST00000397752.3:c.2967_2976delinsGGCAGTCCAA	p.Ser990_Thr992delinsAlaValGln	p.S990_T992delinsAVQ	ENST00000397752	NM_000245.2	989	gtAAGCCCAACT/gtGGCAGTCCAA																																																																															
MED12	9968	MSKCC	GRCh37	X	70346304	70346315	+	inframe_deletion	In_Frame_Del	DEL	CATCAGTGGCCT	CATCAGTGGCCT	-			P-0037497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	289	642	0	ENST00000374080.3:c.2659_2670del	p.Ser887_Ile890del	p.S887_I890del	ENST00000374080		885	agCATCAGTGGCCTc/agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0037518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	59	363	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	47	556	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435798	110435798	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1240854451		P-0037532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	90	345	1	ENST00000375856.3:c.2603C>T	p.Ser868Leu	p.S868L	ENST00000375856	NM_003749.2	868	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0037532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	202	492	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367257	50367257	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1245618829		P-0037532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	66	344	2	ENST00000331340.3:c.64G>A	p.Asp22Asn	p.D22N	ENST00000331340	NM_006060.4	22	Gat/Aat																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992720	68992720	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182978151		P-0037532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	220	573	1	ENST00000288368.4:c.1685G>A	p.Arg562His	p.R562H	ENST00000288368	NM_024870.2	562	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577057	7577058	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	427	679	1	ENST00000269305.4:c.880dup	p.Glu294GlyfsTer12	p.E294Gfs*12	ENST00000269305	NM_001126112.2	294	gag/gGag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15984012	15984012	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	33	414	0	ENST00000268712.3:c.3207T>G	p.His1069Gln	p.H1069Q	ENST00000268712	NM_006311.3	1069	caT/caG																																																																															
APC	324	MSKCC	GRCh37	5	112175217	112175217	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	183	240	0	ENST00000257430.4:c.3929del	p.Lys1310ArgfsTer11	p.K1310Rfs*11	ENST00000257430	NM_000038.5	1309	gAa/ga																																																																															
SDHC	6391	MSKCC	GRCh37	1	161310413	161310413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	530	571	1	ENST00000367975.2:c.209G>A	p.Cys70Tyr	p.C70Y	ENST00000367975	NM_003001.3	70	tGc/tAc																																																																															
RET	5979	MSKCC	GRCh37	10	43622086	43622086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	76	558	0	ENST00000355710.3:c.3103G>A	p.Glu1035Lys	p.E1035K	ENST00000355710	NM_020975.4	1035	Gag/Aag																																																																															
CBL	867	MSKCC	GRCh37	11	119148904	119148904	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	137	432	0	ENST00000264033.4:c.1124G>T	p.Gly375Val	p.G375V	ENST00000264033	NM_005188.3	375	gGc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445359	49445359	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1363389206		P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	248	841	0	ENST00000301067.7:c.2107G>A	p.Glu703Lys	p.E703K	ENST00000301067	NM_003482.3	703	Gag/Aag																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121437424	121437424	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	121	586	0	ENST00000257555.6:c.1762C>G	p.Pro588Ala	p.P588A	ENST00000257555		588	Ccc/Gcc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133821	41133821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	412	489	1	ENST00000379561.5:c.1807G>A	p.Asp603Asn	p.D603N	ENST00000379561	NM_002015.3	603	Gat/Aat																																																																															
DIS3	22894	MSKCC	GRCh37	13	73334666	73334666	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	283	444	0	ENST00000377767.4:c.2793+1G>T		p.X931_splice	ENST00000377767	NM_014953.3	931																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72821988	72821989	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs752028320		P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	44	422	0	ENST00000268489.5:c.10184_10186dup	p.Gln3395dup	p.Q3395dup	ENST00000268489	NM_006885.3	3395	ccc/cAGCcc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81891919	81891919	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	163	673	0	ENST00000359376.3:c.389A>T	p.His130Leu	p.H130L	ENST00000359376	NM_002661.3	130	cAc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	588	713	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																															
RARA	5914	MSKCC	GRCh37	17	38511593	38511593	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	221	627	1	ENST00000254066.5:c.1091G>T	p.Arg364Leu	p.R364L	ENST00000254066	NM_000964.3	364	cGg/cTg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40369415	40369415	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	129	841	0	ENST00000293328.3:c.1237A>T	p.Ser413Cys	p.S413C	ENST00000293328	NM_012448.3	413	Agt/Tgt																																																																															
CIC	23152	MSKCC	GRCh37	19	42790944	42790944	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	582	678	0	ENST00000575354.2:c.89G>T	p.Arg30Leu	p.R30L	ENST00000575354	NM_015125.3	30	cGc/cTc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967276	134967276	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	313	633	0	ENST00000398015.3:c.2615C>G	p.Ala872Gly	p.A872G	ENST00000398015	NM_004441.4	872	gCg/gGg																																																																															
TERT	7015	MSKCC	GRCh37	5	1255449	1255449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	80	746	0	ENST00000310581.5:c.3110C>T	p.Ser1037Phe	p.S1037F	ENST00000310581	NM_198253.2	1037	tCt/tTt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106547265	106547277	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCGGGAGCAAA	CCCCGGGAGCAAA	-			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	133	469	0	ENST00000369096.4:c.502_514del	p.Pro168ThrfsTer9	p.P168Tfs*9	ENST00000369096	NM_001198.3	168	CCCCGGGAGCAAAac/ac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518067	8518067	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	246	615	0	ENST00000356435.5:c.1324G>T	p.Glu442Ter	p.E442*	ENST00000356435		442	Gaa/Taa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98241428	98241428	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	289	453	0	ENST00000331920.6:c.1069G>C	p.Ala357Pro	p.A357P	ENST00000331920	NM_000264.3	357	Gcc/Ccc																																																																															
ATRX	546	MSKCC	GRCh37	X	76856028	76856028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	111	313	0	ENST00000373344.5:c.5572G>T	p.Gly1858Cys	p.G1858C	ENST00000373344	NM_000489.3	1858	Ggc/Tgc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52663027	52663028	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TATTCTTGATTCTTCAGTT			P-0037557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	92	439	0	ENST00000394830.3:c.1307_1325dup	p.Tyr442Ter	p.Y442*	ENST00000394830	NM_018313.4	442	tat/taAACTGAAGAATCAAGAATAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579487	7579487	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	361	624	1	ENST00000269305.4:c.200del	p.Pro67GlnfsTer56	p.P67Qfs*56	ENST00000269305	NM_001126112.2	67	cCa/ca																																																																															
STK11	6794	MSKCC	GRCh37	19	1220371	1220371	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	238	506	0	ENST00000326873.7:c.465-1G>C		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
DUSP4	1846	MSKCC	GRCh37	8	29207771	29207771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	381	584	0	ENST00000240100.2:c.25G>A	p.Glu9Lys	p.E9K	ENST00000240100	NM_001394.6	9	Gag/Aag																																																																															
PARP1	142	MSKCC	GRCh37	1	226574132	226574133	+	missense_variant	Missense_Mutation	DNP	GT	GT	AA			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	129	431	2	ENST00000366794.5:c.728_729delinsTT	p.Asp243Val	p.D243V	ENST00000366794	NM_001618.3	243	gAC/gTT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434911	49434912	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGCCCAGCATCGGGGGCT			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	45	439	0	ENST00000301067.7:c.6623_6641dup	p.Ser2215AlafsTer34	p.S2215Afs*34	ENST00000301067	NM_003482.3	2214	gcc/gcAGCCCCCGATGCTGGGCGCc																																																																															
POLE	5426	MSKCC	GRCh37	12	133236026	133236026	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	184	445	0	ENST00000320574.5:c.3130G>T	p.Glu1044Ter	p.E1044*	ENST00000320574	NM_006231.2	1044	Gaa/Taa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992753	72992753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	103	470	0	ENST00000268489.5:c.1292C>T	p.Ser431Leu	p.S431L	ENST00000268489	NM_006885.3	431	tCa/tTa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170519	11170519	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	277	526	1	ENST00000344626.4:c.4726G>T	p.Glu1576Ter	p.E1576*	ENST00000344626	NM_003072.3	1576	Gag/Tag																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912480	50912480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	242	596	0	ENST00000440232.2:c.1994G>T	p.Ser665Ile	p.S665I	ENST00000440232	NM_002691.3	665	aGt/aTt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213798	66213798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	93	325	0	ENST00000273854.3:c.2632C>A	p.Pro878Thr	p.P878T	ENST00000273854	NM_004439.5	878	Ccc/Acc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523544	106523544	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	77	170	0	ENST00000359195.3:c.2696C>A	p.Thr899Lys	p.T899K	ENST00000359195	NM_002649.2	899	aCg/aAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499828	8499828	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	141	358	0	ENST00000356435.5:c.2141C>A	p.Pro714His	p.P714H	ENST00000356435		714	cCt/cAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974805	21974818	+	frameshift_variant	Frame_Shift_Del	DEL	TGCTCCCCGCCGCC	TGCTCCCCGCCGCC	GCTCGCG			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	114	123	1	ENST00000304494.5:c.9_22delinsCGCGAGC	p.Ala5SerfsTer19	p.A5Sfs*19	ENST00000304494	NM_000077.4	3	ccGGCGGCGGGGAGCAgc/ccCGCGAGCgc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118926	70118926	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	52	515	1	ENST00000245479.2:c.498G>T	p.Lys166Asn	p.K166N	ENST00000245479	NM_000346.3	166	aaG/aaT																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713648	30713648	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	14	356	1	ENST00000359013.4:c.1048A>C	p.Thr350Pro	p.T350P	ENST00000359013	NM_001024847.2	350	Acc/Ccc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168719	56168719	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	22	354	0	ENST00000399503.3:c.1573del	p.Gln525SerfsTer32	p.Q525Sfs*32	ENST00000399503	NM_005921.1	525	Cag/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	534	412	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156719	20156719	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	147	422	0	ENST00000379607.5:c.38G>C	p.Arg13Pro	p.R13P	ENST00000379607	NM_001412.3	13	cGc/cCc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133523	55133523	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	56	404	0	ENST00000257290.5:c.827C>A	p.Thr276Lys	p.T276K	ENST00000257290	NM_006206.4	276	aCg/aAg																																																																															
CBL	867	MSKCC	GRCh37	11	119148875	119148876	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AT			P-0037651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	54	228	0	ENST00000264033.4:c.1096-1_1096delinsAT		p.X366_splice	ENST00000264033	NM_005188.3	366																																																																																
POLE	5426	MSKCC	GRCh37	12	133219509	133219509	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	152	635	2	ENST00000320574.5:c.4625del	p.Gly1542AlafsTer20	p.G1542Afs*20	ENST00000320574	NM_006231.2	1542	gGc/gc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28592610	28592610	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	50	348	0	ENST00000241453.7:c.2535G>T	p.Arg845Ser	p.R845S	ENST00000241453	NM_004119.2	845	agG/agT																																																																															
TSC2	7249	MSKCC	GRCh37	16	2127598	2127598	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0037651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	61	424	0	ENST00000219476.3:c.2838-1G>T		p.X946_splice	ENST00000219476	NM_000548.3	946																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5274317	5274317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	62	494	1	ENST00000357368.4:c.130G>T	p.Gly44Cys	p.G44C	ENST00000357368	NM_002850.3	44	Ggc/Tgc																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149243836	149243836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	86	548	1	ENST00000360632.3:c.982G>A	p.Glu328Lys	p.E328K	ENST00000360632	NM_015472.4	328	Gag/Aag																																																																															
TAP1	6890	MSKCC	GRCh37	6	32820851	32820851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	74	663	0	ENST00000354258.4:c.743C>T	p.Ser248Leu	p.S248L	ENST00000354258	NM_000593.5	248	tCg/tTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984079	2984079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	44	433	0	ENST00000396946.4:c.451G>T	p.Glu151Ter	p.E151*	ENST00000396946	NM_032415.4	151	Gag/Tag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033265	69033265	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1227610892		P-0037651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	126	367	0	ENST00000288368.4:c.3705C>A	p.Asn1235Lys	p.N1235K	ENST00000288368	NM_024870.2	1235	aaC/aaA																																																																															
ATRX	546	MSKCC	GRCh37	X	76938153	76938153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	176	639	1	ENST00000373344.5:c.2595C>A	p.His865Gln	p.H865Q	ENST00000373344	NM_000489.3	865	caC/caA																																																																															
ATRX	546	MSKCC	GRCh37	X	76939102	76939102	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	127	558	0	ENST00000373344.5:c.1646G>T	p.Ser549Ile	p.S549I	ENST00000373344	NM_000489.3	549	aGc/aTc																																																																															
ATRX	546	MSKCC	GRCh37	X	76949315	76949315	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0037651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	120	409	0	ENST00000373344.5:c.482del	p.Gly161GlufsTer9	p.G161Efs*9	ENST00000373344	NM_000489.3	161	gGa/ga																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519922		P-0037674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	129	523	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577579	7577579	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	98	461	0	ENST00000269305.4:c.702C>A	p.Tyr234Ter	p.Y234*	ENST00000269305	NM_001126112.2	234	taC/taA																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257797	16257797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	25	331	0	ENST00000375759.3:c.5062G>A	p.Glu1688Lys	p.E1688K	ENST00000375759	NM_015001.2	1688	Gaa/Aaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257803	16257803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	26	321	0	ENST00000375759.3:c.5068G>A	p.Ala1690Thr	p.A1690T	ENST00000375759	NM_015001.2	1690	Gct/Act																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068981	30068981	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	34	385	0	ENST00000331968.5:c.1948G>C	p.Glu650Gln	p.E650Q	ENST00000331968	NM_002742.2	650	Gag/Cag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661792	227661792	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	129	580	0	ENST00000305123.5:c.1663A>G	p.Met555Val	p.M555V	ENST00000305123	NM_005544.2	555	Atg/Gtg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62325780	62325781	+	missense_variant,NMD_transcript_variant	Missense_Mutation	DNP	GG	GG	TT			P-0037674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	107	419	1	ENST00000482936.1:c.3048_3049delinsTT	p.Asp1017Tyr	p.D1017Y	ENST00000482936		1016	ctGGac/ctTTac																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801128	1801128	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1333699127		P-0037674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	195	715	2	ENST00000260795.2:c.257G>A	p.Arg86His	p.R86H	ENST00000260795		86	cGt/cAt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163576	32163576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	63	312	0	ENST00000375023.3:c.5650G>T	p.Val1884Leu	p.V1884L	ENST00000375023	NM_004557.3	1884	Gta/Tta																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38139065	38139065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	847	480	1	ENST00000317025.8:c.3538G>A	p.Asp1180Asn	p.D1180N	ENST00000317025	NM_023034.1	1180	Gat/Aat																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38139086	38139086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	690	421	0	ENST00000317025.8:c.3517G>A	p.Glu1173Lys	p.E1173K	ENST00000317025	NM_023034.1	1173	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	289	439	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108204681	108204681	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs745775382		P-0037771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	94	181	0	ENST00000278616.4:c.7996A>G	p.Thr2666Ala	p.T2666A	ENST00000278616	NM_000051.3	2666	Act/Gct																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659952	227659952	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	50	695	0	ENST00000305123.5:c.3503G>T	p.Gly1168Val	p.G1168V	ENST00000305123	NM_005544.2	1168	gGg/gTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11168338	11168338	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	69	368	0	ENST00000361445.4:c.7534G>T	p.Asp2512Tyr	p.D2512Y	ENST00000361445	NM_004958.3	2512	Gac/Tac																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156837895	156837895	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0037771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	215	674	0	ENST00000524377.1:c.429-1G>T		p.X143_splice	ENST00000524377	NM_002529.3	143																																																																																
WT1	7490	MSKCC	GRCh37	11	32417937	32417937	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	119	575	0	ENST00000332351.3:c.1115C>A	p.Pro372His	p.P372H	ENST00000332351	NM_024426.4	372	cCt/cAt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562368	95562368	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs368343829		P-0037771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	44	438	0	ENST00000343455.3:c.4889G>T	p.Arg1630Leu	p.R1630L	ENST00000343455	NM_177438.2	1630	cGc/cTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361138	66361138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	61	370	0	ENST00000273854.3:c.1034G>T	p.Arg345Ile	p.R345I	ENST00000273854	NM_004439.5	345	aGa/aTa																																																																															
E2F3	1871	MSKCC	GRCh37	6	20487005	20487005	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs951556755		P-0037771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	131	375	0	ENST00000346618.3:c.970A>G	p.Thr324Ala	p.T324A	ENST00000346618	NM_001949.4	324	Aca/Gca																																																																															
SYK	6850	MSKCC	GRCh37	9	93650029	93650029	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0037771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	52	434	0	ENST00000375746.1:c.1582-2A>T		p.X528_splice	ENST00000375746	NM_001174167.1	528																																																																																
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	44	667	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0037774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	21	432	1	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602580	10602580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	60	737	2	ENST00000171111.5:c.998G>A	p.Gly333Asp	p.G333D	ENST00000171111	NM_203500.1	333	gGc/gAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11118700	11118700	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0037774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	39	613	0	ENST00000344626.4:c.2123+1G>C		p.X708_splice	ENST00000344626	NM_003072.3	708																																																																																
IRS1	3667	MSKCC	GRCh37	2	227662721	227662721	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	48	767	1	ENST00000305123.5:c.734T>A	p.Val245Glu	p.V245E	ENST00000305123	NM_005544.2	245	gTg/gAg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675578	86675578	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	26	326	0	ENST00000274376.6:c.2514T>A	p.Asn838Lys	p.N838K	ENST00000274376	NM_002890.2	838	aaT/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0037901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	9	519	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865500	57865500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	209	553	1	ENST00000228682.2:c.2977C>T	p.Pro993Ser	p.P993S	ENST00000228682	NM_005269.2	993	Ccc/Tcc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103519183	103519183	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	101	255	0	ENST00000355739.4:c.2521C>G	p.His841Asp	p.H841D	ENST00000355739	NM_000123.3	841	Cac/Gac																																																																															
SOS1	6654	MSKCC	GRCh37	2	39233566	39233566	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	100	271	0	ENST00000402219.2:c.2778T>G	p.Cys926Trp	p.C926W	ENST00000402219	NM_005633.3	926	tgT/tgG																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22161984	22161984	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	123	356	0	ENST00000215832.6:c.271C>T	p.Arg91Ter	p.R91*	ENST00000215832	NM_002745.4	91	Cga/Tga																																																																															
FANCC	2176	MSKCC	GRCh37	9	97863997	97863997	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	109	382	0	ENST00000289081.3:c.1669C>T	p.Gln557Ter	p.Q557*	ENST00000289081	NM_000136.2	557	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0037950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	173	631	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0037950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	134	539	1	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793287	242793287	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	189	746	1	ENST00000334409.5:c.790C>A	p.Arg264Ser	p.R264S	ENST00000334409	NM_005018.2	264	Cgc/Agc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056330	26056330	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	110	405	1	ENST00000343677.2:c.327G>C	p.Lys109Asn	p.K109N	ENST00000343677	NM_005319.3	109	aaG/aaC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187554893	187554893	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0037950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	252	429	0	ENST00000441802.2:c.4268C>G	p.Ser1423Ter	p.S1423*	ENST00000441802	NM_005245.3	1423	tCa/tGa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435173	18435173	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	79	366	0	ENST00000266497.5:c.158A>T	p.His53Leu	p.H53L	ENST00000266497		53	cAc/cTc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760803	59760803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	116	497	0	ENST00000259008.2:c.3604G>A	p.Glu1202Lys	p.E1202K	ENST00000259008	NM_032043.2	1202	Gaa/Aaa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732948	30732948	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	90	314	0	ENST00000359013.4:c.1636T>C	p.Trp546Arg	p.W546R	ENST00000359013	NM_001024847.2	546	Tgg/Cgg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902808	1902809	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	131	583	0	ENST00000382895.3:c.430dup	p.Cys144LeufsTer3	p.C144Lfs*3	ENST00000382895	NM_133330.2	143	att/aTtt																																																																															
KIT	3815	MSKCC	GRCh37	4	55604632	55604632	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	261	564	0	ENST00000288135.5:c.2840A>T	p.Gln947Leu	p.Q947L	ENST00000288135	NM_000222.2	947	cAg/cTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177403	56177403	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	78	340	0	ENST00000399503.3:c.2376G>T	p.Lys792Asn	p.K792N	ENST00000399503	NM_005921.1	792	aaG/aaT																																																																															
STAG2	10735	MSKCC	GRCh37	X	123234427	123234428	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	84	355	0	ENST00000218089.9:c.3789dup	p.Gly1264TrpfsTer12	p.G1264Wfs*12	ENST00000218089	NM_001042749.1	1263	ctt/cTtt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913407		P-0038021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	85	286	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0038021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	270	546	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249029	55249029	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs483352806		P-0038021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	285	531	0	ENST00000275493.2:c.2327G>A	p.Arg776His	p.R776H	ENST00000275493	NM_005228.3	776	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711971	89711971	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0038021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	74	306	0	ENST00000371953.3:c.589A>T	p.Lys197Ter	p.K197*	ENST00000371953	NM_000314.4	197	Aag/Tag																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514692	103514692	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	115	335	0	ENST00000355739.4:c.1193A>G	p.Asp398Gly	p.D398G	ENST00000355739	NM_000123.3	398	gAc/gGc																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0038022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	108	554	0	ENST00000397752.3:c.3028+1G>A		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
FLT3	2322	MSKCC	GRCh37	13	28622515	28622515	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	63	314	0	ENST00000241453.7:c.1102T>C	p.Cys368Arg	p.C368R	ENST00000241453	NM_004119.2	368	Tgt/Cgt																																																																															
LYN	4067	MSKCC	GRCh37	8	56911020	56911020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	93	439	0	ENST00000519728.1:c.1166C>T	p.Ala389Val	p.A389V	ENST00000519728	NM_002350.3	389	gCt/gTt																																																																															
RET	5979	MSKCC	GRCh37	10	43623686	43623686	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs532862288		P-0038961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	120	406	1	ENST00000355710.3:c.3314C>T	p.Ala1105Val	p.A1105V	ENST00000355710	NM_020975.4	1105	gCg/gTg																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39311705	39311705	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	79	676	0	ENST00000373001.3:c.954C>G	p.Ile318Met	p.I318M	ENST00000373001	NM_022157.3	318	atC/atG																																																																															
KDM5A	5927	MSKCC	GRCh37	12	432854	432854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	96	429	0	ENST00000399788.2:c.2062C>A	p.Leu688Ile	p.L688I	ENST00000399788	NM_001042603.1	688	Ctc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579365	7579388	+	inframe_deletion	In_Frame_Del	DEL	CGTAGCTGCCCTGGTAGGTTTTCT	CGTAGCTGCCCTGGTAGGTTTTCT	-			P-0038961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	148	745	0	ENST00000269305.4:c.299_322del	p.Gln100_Gly108delinsArg	p.Q100_G108delinsR	ENST00000269305	NM_001126112.2	100	cAGAAAACCTACCAGGGCAGCTACGgt/cgt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808958	1808958	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	182	557	0	ENST00000260795.2:c.2393del	p.Pro798HisfsTer22	p.P798Hfs*22	ENST00000260795		797	gCc/gc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11217315	11217335	+	inframe_deletion	In_Frame_Del	DEL	CGTGCAGTTTCTCATACCAGG	CGTGCAGTTTCTCATACCAGG	-			P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	67	592	0	ENST00000361445.4:c.4343_4363del	p.Thr1448_Glu1455delinsLys	p.T1448_E1455delinsK	ENST00000361445	NM_004958.3	1448	aCCTGGTATGAGAAACTGCACGag/aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	118	296	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435979	49435979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	143	701	0	ENST00000301067.7:c.6002G>A	p.Arg2001Gln	p.R2001Q	ENST00000301067	NM_003482.3	2001	cGg/cAg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549263	21549263	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780614508		P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	91	761	2	ENST00000382592.4:c.3013G>A	p.Val1005Ile	p.V1005I	ENST00000382592	NM_014572.2	1005	Gta/Ata																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046611	30046611	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs556530827		P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	84	437	0	ENST00000331968.5:c.2572C>T	p.Arg858Cys	p.R858C	ENST00000331968	NM_002742.2	858	Cgc/Tgc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457304	67457304	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223765		P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	47	546	1	ENST00000327367.4:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000327367	NM_005902.3	93	cGa/cAa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473635	67473635	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906853		P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	129	561	0	ENST00000327367.4:c.715G>A	p.Glu239Lys	p.E239K	ENST00000327367	NM_005902.3	239	Gag/Aag																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45394805	45394805	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	32	204	0	ENST00000262160.6:c.544C>T	p.Arg182Ter	p.R182*	ENST00000262160	NM_005901.5	182	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589138	67589138	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519757		P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	31	167	0	ENST00000274335.5:c.1126G>A	p.Gly376Arg	p.G376R	ENST00000274335		376	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112174119	112174119	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	45	217	0	ENST00000257430.4:c.2828C>A	p.Ser943Ter	p.S943*	ENST00000257430	NM_000038.5	943	tCa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	55	245	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157150382	157150382	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	81	415	0	ENST00000346085.5:c.1564G>C	p.Val522Leu	p.V522L	ENST00000346085	NM_020732.3	522	Gtg/Ctg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37002734	37002734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	112	534	0	ENST00000358127.4:c.515C>T	p.Thr172Met	p.T172M	ENST00000358127	NM_001280556.1	172	aCg/aTg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206651195	206651195	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	168	712	1	ENST00000367120.3:c.805C>A	p.Leu269Met	p.L269M	ENST00000367120	NM_014002.3	269	Ctg/Atg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100427	8100427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	156	778	0	ENST00000346208.3:c.401C>A	p.Pro134His	p.P134H	ENST00000346208		134	cCc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	140	418	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220505	1220505	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs886039554		P-0039078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	426	778	1	ENST00000326873.7:c.597+1G>T		p.X199_splice	ENST00000326873	NM_000455.4	199																																																																																
CENPA	1058	MSKCC	GRCh37	2	27015690	27015690	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	169	537	1	ENST00000335756.4:c.277G>T	p.Ala93Ser	p.A93S	ENST00000335756	NM_001809.3	93	Gcc/Tcc																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47601037	47601037	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	195	570	1	ENST00000263735.4:c.275A>T	p.Asp92Val	p.D92V	ENST00000263735	NM_002354.2	92	gAt/gTt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98242695	98242695	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773704443		P-0039078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	123	432	2	ENST00000331920.6:c.922G>A	p.Ala308Thr	p.A308T	ENST00000331920	NM_000264.3	308	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	47	292	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	44	519	0	ENST00000269305.4:c.823T>G	p.Cys275Gly	p.C275G	ENST00000269305	NM_001126112.2	275	Tgt/Ggt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101353	27101354	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCTT			P-0039237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	62	556	0	ENST00000324856.7:c.4638_4641dup	p.His1548PhefsTer25	p.H1548Ffs*25	ENST00000324856	NM_006015.4	1545	-/CCTT																																																																															
INSR	3643	MSKCC	GRCh37	19	7117194	7117194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	76	589	1	ENST00000302850.5:c.4022G>T	p.Gly1341Val	p.G1341V	ENST00000302850	NM_000208.2	1341	gGg/gTg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382202	152382202	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	40	358	0	ENST00000206249.3:c.1312A>T	p.Met438Leu	p.M438L	ENST00000206249	NM_000125.3	438	Atg/Ttg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141568617	141568617	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	106	488	0	ENST00000220592.5:c.845G>T	p.Cys282Phe	p.C282F	ENST00000220592	NM_012154.3	282	tGc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0039396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	981	711	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
CDC42	998	MSKCC	GRCh37	1	22412950	22412950	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	58	137	0	ENST00000344548.3:c.197G>C	p.Arg66Thr	p.R66T	ENST00000344548	NM_001039802.1	66	aGa/aCa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602918	10602918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	491	750	0	ENST00000171111.5:c.660C>G	p.Phe220Leu	p.F220L	ENST00000171111	NM_203500.1	220	ttC/ttG																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663013	227663013	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	620	602	0	ENST00000305123.5:c.442G>C	p.Asp148His	p.D148H	ENST00000305123	NM_005544.2	148	Gac/Cac																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347846	347846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	41	857	0	ENST00000262320.3:c.1660G>A	p.Ala554Thr	p.A554T	ENST00000262320	NM_003502.3	554	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578195	7578202	+	frameshift_variant	Frame_Shift_Del	DEL	CACCACCA	CACCACCA	-			P-0039449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	42	612	0	ENST00000269305.4:c.647_654del	p.Val216AlafsTer3	p.V216Afs*3	ENST00000269305	NM_001126112.2	216	gTGGTGGTG/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			488	111	373	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0039592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	46	360	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577543	7577543	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1019340046		P-0039592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			856	64	625	1	ENST00000269305.4:c.738G>A	p.Met246Ile	p.M246I	ENST00000269305	NM_001126112.2	246	atG/atA																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044550	47044550	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	138	354	0	ENST00000329236.7:c.1813G>T	p.Glu605Ter	p.E605*	ENST00000329236	NM_001204466.1	605	Gag/Tag																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873657	35873678	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTCCGAGCCGCGCGGCACCT	GGCTCCGAGCCGCGCGGCACCT	-			P-0039592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			622	98	345	0	ENST00000216797.5:c.173_194del	p.Glu58AlafsTer25	p.E58Afs*25	ENST00000216797	NM_020529.2	58	gAGGTGCCGCGCGGCTCGGAGCCc/gc																																																																															
BCL2	596	MSKCC	GRCh37	18	60795967	60795967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			710	100	513	0	ENST00000333681.4:c.611C>A	p.Pro204His	p.P204H	ENST00000333681		204	cCc/cAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248541	212248541	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			880	102	543	0	ENST00000342788.4:c.3726C>G	p.Tyr1242Ter	p.Y1242*	ENST00000342788	NM_005235.2	1242	taC/taG																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53250049	53250049	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	139	340	0	ENST00000375401.3:c.200C>G	p.Pro67Arg	p.P67R	ENST00000375401	NM_004187.3	67	cCc/cGc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143993	11143993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	265	755	1	ENST00000344626.4:c.3574C>T	p.Arg1192Cys	p.R1192C	ENST00000344626	NM_003072.3	1192	Cgc/Tgc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44514780	44514780	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769567889		P-0039631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	221	601	0	ENST00000291552.4:c.467G>A	p.Arg156His	p.R156H	ENST00000291552	NM_006758.2	156	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0039792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	265	591	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653829	89653829	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	127	290	0	ENST00000371953.3:c.127G>T	p.Glu43Ter	p.E43*	ENST00000371953	NM_000314.4	43	Gaa/Taa																																																																															
RARA	5914	MSKCC	GRCh37	17	38508245	38508245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	88	455	1	ENST00000254066.5:c.553G>A	p.Gly185Arg	p.G185R	ENST00000254066	NM_000964.3	185	Ggg/Agg																																																																															
PARP1	142	MSKCC	GRCh37	1	226564936	226564936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369900729		P-0039792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	86	412	0	ENST00000366794.5:c.1814C>T	p.Pro605Leu	p.P605L	ENST00000366794	NM_001618.3	605	cCg/cTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133249752	133249752	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs776770625		P-0039792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	136	324	0	ENST00000320574.5:c.1471G>A	p.Glu491Lys	p.E491K	ENST00000320574	NM_006231.2	491	Gag/Aag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678539	88678539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	148	355	0	ENST00000360948.2:c.997C>A	p.Leu333Met	p.L333M	ENST00000360948	NM_001012338.2	333	Ctg/Atg																																																																															
KDR	3791	MSKCC	GRCh37	4	55946328	55946328	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0039792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	79	179	0	ENST00000263923.4:c.3851G>T	p.Gly1284Val	p.G1284V	ENST00000263923	NM_002253.2	1284	gGa/gTa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245344	153245344	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	156	368	0	ENST00000281708.4:c.1847del	p.Thr616AsnfsTer12	p.T616Nfs*12	ENST00000281708	NM_033632.3	616	aCa/aa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205363	38205373	+	frameshift_variant	Frame_Shift_Del	DEL	AGTGGGGCTAA	AGTGGGGCTAA	-			P-0039792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	328	563	0	ENST00000317025.8:c.317_327del	p.Phe106Ter	p.F106*	ENST00000317025	NM_023034.1	106	tTTAGCCCCACT/t																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412005	63412005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	132	310	0	ENST00000330258.3:c.1162G>T	p.Val388Leu	p.V388L	ENST00000330258	NM_152424.3	388	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0040025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	204	894	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391214	89391214	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs530556931		P-0040025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	167	391	0	ENST00000336596.2:c.1280C>T	p.Ala427Val	p.A427V	ENST00000336596	NM_005233.5	427	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7572991	7572991	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	104	490	0	ENST00000269305.4:c.1118del	p.Lys373ArgfsTer49	p.K373Rfs*49	ENST00000269305	NM_001126112.2	373	aAg/ag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100093	157100120	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCGGCGGCGGCAGCAGCAGGAGGCG	GCGGCGGCGGCGGCAGCAGCAGGAGGCG	-			P-0040025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	22	32	0	ENST00000346085.5:c.1044_1071del	p.Ala349MetfsTer11	p.A349Mfs*11	ENST00000346085	NM_020732.3	344	GCGGCGGCGGCGGCAGCAGCAGGAGGCGgc/gc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67201508	67201508	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1151	177	832	2	ENST00000312629.5:c.952del	p.Asp318MetfsTer14	p.D318Mfs*14	ENST00000312629	NM_003952.2	317	Ggg/gg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859694	57859694	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	120	471	0	ENST00000228682.2:c.748G>C	p.Glu250Gln	p.E250Q	ENST00000228682	NM_005269.2	250	Gag/Cag																																																																															
BLM	641	MSKCC	GRCh37	15	91293210	91293210	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	46	404	0	ENST00000355112.3:c.712A>G	p.Ile238Val	p.I238V	ENST00000355112	NM_000057.2	238	Atc/Gtc																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732442	74732442	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	76	384	0	ENST00000359995.5:c.467del	p.Arg156HisfsTer76	p.R156Hfs*76	ENST00000359995	NM_001195427.1	156	cGa/ca																																																																															
AXL	558	MSKCC	GRCh37	19	41726601	41726601	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775741490		P-0040025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	223	818	0	ENST00000301178.4:c.146G>A	p.Gly49Glu	p.G49E	ENST00000301178	NM_021913.4	49	gGa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112170705	112170705	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	330	486	1	ENST00000257430.4:c.1801G>T	p.Glu601Ter	p.E601*	ENST00000257430	NM_000038.5	601	Gag/Tag																																																																															
IRF4	3662	MSKCC	GRCh37	6	401737	401737	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	194	712	1	ENST00000380956.4:c.1059C>A	p.Asp353Glu	p.D353E	ENST00000380956	NM_001195286.1	353	gaC/gaA																																																																															
CDK6	1021	MSKCC	GRCh37	7	92244558	92244558	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	40	378	0	ENST00000265734.4:c.877A>C	p.Ser293Arg	p.S293R	ENST00000265734	NM_001259.6	293	Agt/Cgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	107	376	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0040037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	72	509	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170453	11170453	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	267	763	1	ENST00000344626.4:c.4660C>T	p.Gln1554Ter	p.Q1554*	ENST00000344626	NM_003072.3	1554	Cag/Tag																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15827362	15827362	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1461565397		P-0040037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	162	534	2	ENST00000307771.7:c.478G>A	p.Val160Met	p.V160M	ENST00000307771	NM_005089.3	160	Gtg/Atg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187847	11187847	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	86	556	0	ENST00000361445.4:c.6050T>C	p.Ile2017Thr	p.I2017T	ENST00000361445	NM_004958.3	2017	aTc/aCc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193104527	193104527	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	47	382	0	ENST00000367435.3:c.314C>A	p.Ser105Ter	p.S105*	ENST00000367435	NM_024529.4	105	tCg/tAg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976702	2976702	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755090332		P-0040037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	83	560	4	ENST00000396946.4:c.1310G>A	p.Arg437His	p.R437H	ENST00000396946	NM_032415.4	437	cGc/cAc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729709	41729709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768547360		P-0040037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	183	548	2	ENST00000242208.4:c.820G>A	p.Gly274Arg	p.G274R	ENST00000242208	NM_002192.2	274	Gga/Aga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0040042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	32	369	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154815	2154815	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	122	772	0	ENST00000434045.2:c.406C>A	p.Leu136Met	p.L136M	ENST00000434045	NM_001127598.1	136	Ctg/Atg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53243983	53243983	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	68	606	0	ENST00000375401.3:c.1010A>G	p.Asp337Gly	p.D337G	ENST00000375401	NM_004187.3	337	gAc/gGc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259009	16259009	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	59	478	0	ENST00000375759.3:c.6274A>G	p.Ser2092Gly	p.S2092G	ENST00000375759	NM_015001.2	2092	Agt/Ggt																																																																															
CDK6	1021	MSKCC	GRCh37	7	92244457	92244468	+	inframe_deletion	In_Frame_Del	DEL	GGCTGTATTCAG	GGCTGTATTCAG	-			P-0040042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	55	226	0	ENST00000265734.4:c.967_978del	p.Leu323_Ala326del	p.L323_A326del	ENST00000265734	NM_001259.6	323	CTGAATACAGCC/-																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80537247	80537247	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	65	426	0	ENST00000286548.4:c.151G>C	p.Gly51Arg	p.G51R	ENST00000286548	NM_002072.3	51	Ggc/Cgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0040145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	4440	517	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RB1	5925	MSKCC	GRCh37	13	49047527	49047527	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs587778850		P-0040145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	18	215	0	ENST00000267163.4:c.2520+1G>T		p.X840_splice	ENST00000267163	NM_000321.2	840																																																																																
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0040145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	107	534	0	ENST00000269305.4:c.920-2A>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72845502	72845502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	24	490	0	ENST00000268489.5:c.3838G>A	p.Asp1280Asn	p.D1280N	ENST00000268489	NM_006885.3	1280	Gac/Aac																																																																															
PAK7	57144	MSKCC	GRCh37	20	9543544	9543544	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	19	373	0	ENST00000353224.5:c.1610A>G	p.His537Arg	p.H537R	ENST00000353224	NM_177990.2	537	cAc/cGc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005029	150005029	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0040145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	16	360	0	ENST00000253339.5:c.1196C>G	p.Ser399Ter	p.S399*	ENST00000253339		399	tCa/tGa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034440	47034440	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	71	541	0	ENST00000329236.7:c.294del	p.Phe98LeufsTer91	p.F98Lfs*91	ENST00000329236	NM_001204466.1	98	ttC/tt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	87	345	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	172	445	5	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	141	644	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	180	333	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31381362	31381362	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113400552		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	131	426	1	ENST00000328111.2:c.1087C>T	p.Arg363Cys	p.R363C	ENST00000328111	NM_006892.3	363	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	120	571	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	27	329	0	ENST00000375687.4:c.1933_1934dup	p.Gly646ValfsTer58	p.G646Vfs*58	ENST00000375687	NM_015338.5	642	-/GG																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	62	581	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	156	601	0	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	112	477	1	ENST00000331920.6:c.3921del	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781157	135781157	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	161	613	0	ENST00000298552.3:c.1808del	p.Pro603ArgfsTer26	p.P603Rfs*26	ENST00000298552	NM_001162426.1	603	cCg/cg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	111	409	1	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	216	442	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	115	431	4	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647028	23647028	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	129	630	0	ENST00000261584.4:c.839del	p.Asn280ThrfsTer8	p.N280Tfs*8	ENST00000261584	NM_024675.3	280	aAc/ac																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	141	519	1	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672462	30672462	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148215318		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	130	568	0	ENST00000376406.3:c.4498G>A	p.Ala1500Thr	p.A1500T	ENST00000376406	NM_014641.2	1500	Gcc/Acc																																																																															
FANCC	2176	MSKCC	GRCh37	9	98003011	98003011	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	53	252	1	ENST00000289081.3:c.265del	p.Ile89PhefsTer2	p.I89Ffs*2	ENST00000289081	NM_000136.2	89	Att/tt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517769	176517769	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs142240686		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	151	663	1	ENST00000292408.4:c.379G>T	p.Asp127Tyr	p.D127Y	ENST00000292408	NM_213647.1	127	Gat/Tat																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894928	101894928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	81	323	0	ENST00000374994.4:c.481G>A	p.Glu161Lys	p.E161K	ENST00000374994	NM_004612.2	161	Gaa/Aaa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741255	145741255	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376045624		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	178	728	0	ENST00000428558.2:c.1151G>A	p.Arg384Gln	p.R384Q	ENST00000428558	NM_004260.3	384	cGg/cAg																																																																															
ALK	238	MSKCC	GRCh37	2	29446388	29446388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769322016		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	149	699	0	ENST00000389048.3:c.3179G>A	p.Arg1060His	p.R1060H	ENST00000389048	NM_004304.4	1060	cGc/cAc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631883	90631883	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	151	621	0	ENST00000330062.3:c.470T>C	p.Ile157Thr	p.I157T	ENST00000330062	NM_002168.2	157	aTc/aCc																																																																															
IRF4	3662	MSKCC	GRCh37	6	395001	395001	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1300046652		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	95	396	1	ENST00000380956.4:c.402del	p.Gly135GlufsTer14	p.G135Efs*14	ENST00000380956	NM_001195286.1	133	Aaa/aa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	138	627	1	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245357	153245357	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	97	460	0	ENST00000281708.4:c.1834C>T	p.Gln612Ter	p.Q612*	ENST00000281708	NM_033632.3	612	Cag/Tag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948747	71948748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs760925109		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	110	735	3	ENST00000298229.2:c.3466dup	p.Arg1156ProfsTer59	p.R1156Pfs*59	ENST00000298229	NM_001567.3	1153	-/C																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794356	242794356	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144217487		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	150	685	3	ENST00000334409.5:c.586G>A	p.Ala196Thr	p.A196T	ENST00000334409	NM_005018.2	196	Gca/Aca																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40460280	40460280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	135	543	0	ENST00000345506.4:c.1991G>A	p.Ser664Asn	p.S664N	ENST00000345506	NM_003152.3	664	aGc/aAc																																																																															
CD276	80381	MSKCC	GRCh37	15	73991987	73991987	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770116040		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	157	631	0	ENST00000318443.5:c.7C>T	p.Arg3Cys	p.R3C	ENST00000318443	NM_001024736.1	3	Cgt/Tgt																																																																															
RAD51	5888	MSKCC	GRCh37	15	41021708	41021708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	76	338	0	ENST00000267868.3:c.650C>T	p.Ala217Val	p.A217V	ENST00000267868	NM_002875.4	217	gCa/gTa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390962	139390962	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs560981171		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	218	877	0	ENST00000277541.6:c.7229C>T	p.Pro2410Leu	p.P2410L	ENST00000277541	NM_017617.3	2410	cCg/cTg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249927	110249927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	128	579	0	ENST00000374672.4:c.748G>A	p.Val250Ile	p.V250I	ENST00000374672	NM_004235.4	250	Gtc/Atc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217223	66217223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	130	393	0	ENST00000273854.3:c.2392C>T	p.His798Tyr	p.H798Y	ENST00000273854	NM_004439.5	798	Cat/Tat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517886	187517886	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs373689624		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	124	422	0	ENST00000441802.2:c.12808C>T	p.Arg4270Ter	p.R4270*	ENST00000441802	NM_005245.3	4270	Cga/Tga																																																																															
CIC	23152	MSKCC	GRCh37	19	42799130	42799131	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	143	763	0	ENST00000575354.2:c.4620dup	p.Thr1541HisfsTer18	p.T1541Hfs*18	ENST00000575354	NM_015125.3	1538	-/C																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100097	27100098	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	54	654	1	ENST00000324856.7:c.3896dup	p.Asn1299LysfsTer24	p.N1299Kfs*24	ENST00000324856	NM_006015.4	1298	gga/ggAa																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45800107	45800107	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	162	581	0	ENST00000372115.3:c.113A>C	p.Lys38Thr	p.K38T	ENST00000372115	NM_001048171.1	38	aAg/aCg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458968	120458968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	194	689	0	ENST00000256646.2:c.6377C>T	p.Ala2126Val	p.A2126V	ENST00000256646	NM_024408.3	2126	gCc/gTc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156830871	156830871	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	137	524	0	ENST00000524377.1:c.145C>T	p.Arg49Ter	p.R49*	ENST00000524377	NM_002529.3	49	Cga/Tga																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852218	63852218	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs916811022		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	128	535	0	ENST00000279873.7:c.2996G>A	p.Arg999Gln	p.R999Q	ENST00000279873	NM_032199.2	999	cGg/cAg																																																																															
YAP1	10413	MSKCC	GRCh37	11	102100561	102100561	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	122	462	1	ENST00000282441.5:c.1405G>T	p.Glu469Ter	p.E469*	ENST00000282441	NM_001130145.2	469	Gag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32930708	32930708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	128	449	0	ENST00000380152.3:c.7579G>A	p.Val2527Ile	p.V2527I	ENST00000380152		2527	Gta/Ata																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066889	30066889	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1303923680		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	92	537	0	ENST00000331968.5:c.2242G>A	p.Ala748Thr	p.A748T	ENST00000331968	NM_002742.2	748	Gct/Act																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420260	88420260	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	124	522	1	ENST00000360948.2:c.2426G>T	p.Arg809Met	p.R809M	ENST00000360948	NM_001012338.2	809	aGg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821945	72821946	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	51	329	0	ENST00000268489.5:c.10229dup	p.Asp3411ArgfsTer20	p.D3411Rfs*20	ENST00000268489	NM_006885.3	3410	cca/ccCa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993551	72993551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	161	626	0	ENST00000268489.5:c.494C>A	p.Pro165His	p.P165H	ENST00000268489	NM_006885.3	165	cCt/cAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350617	89350617	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	162	663	0	ENST00000301030.4:c.2333A>C	p.Lys778Thr	p.K778T	ENST00000301030	NM_001256183.1	778	aAg/aCg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40457661	40457661	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	129	612	0	ENST00000345506.4:c.1414G>T	p.Gly472Cys	p.G472C	ENST00000345506	NM_003152.3	472	Ggc/Tgc																																																																															
MSI2	124540	MSKCC	GRCh37	17	55339517	55339517	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	144	480	0	ENST00000284073.2:c.279del	p.Val95LeufsTer20	p.V95Lfs*20	ENST00000284073	NM_138962.2	92	gaC/ga																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2193765	2193765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	147	511	0	ENST00000398665.3:c.571C>A	p.Pro191Thr	p.P191T	ENST00000398665	NM_032482.2	191	Ccg/Acg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221684	36221684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	184	778	0	ENST00000222270.7:c.5353C>T	p.Pro1785Ser	p.P1785S	ENST00000222270	NM_014727.1	1785	Cca/Tca																																																																															
POLD1	5424	MSKCC	GRCh37	19	50920494	50920494	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	134	592	0	ENST00000440232.2:c.3186G>T	p.Gln1062His	p.Q1062H	ENST00000440232	NM_002691.3	1062	caG/caT																																																																															
SOS1	6654	MSKCC	GRCh37	2	39249912	39249912	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	145	530	0	ENST00000402219.2:c.1657A>G	p.Met553Val	p.M553V	ENST00000402219	NM_005633.3	553	Atg/Gtg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248605	212248605	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	106	455	0	ENST00000342788.4:c.3662A>G	p.Tyr1221Cys	p.Y1221C	ENST00000342788	NM_005235.2	1221	tAc/tGc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661677	227661677	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	25	613	0	ENST00000305123.5:c.1778A>T	p.Glu593Val	p.E593V	ENST00000305123	NM_005544.2	593	gAg/gTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557751	187557752	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	81	307	0	ENST00000441802.2:c.3959_3960del	p.Tyr1320Ter	p.Y1320*	ENST00000441802	NM_005245.3	1320	tAT/t																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31466379	31466379	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	134	559	0	ENST00000344624.3:c.2376del	p.Lys792AsnfsTer7	p.K792Nfs*7	ENST00000344624		792	aaA/aa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168825	56168825	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	86	354	0	ENST00000399503.3:c.1679G>T	p.Trp560Leu	p.W560L	ENST00000399503	NM_005921.1	560	tGg/tTg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449811	149449811	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	179	669	0	ENST00000286301.3:c.1253del	p.Leu418CysfsTer12	p.L418Cfs*12	ENST00000286301	NM_005211.3	418	tTg/tg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149510227	149510227	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	102	498	0	ENST00000261799.4:c.1244-2A>G		p.X415_splice	ENST00000261799	NM_002609.3	415																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176518701	176518701	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	145	597	0	ENST00000292408.4:c.619T>C	p.Trp207Arg	p.W207R	ENST00000292408	NM_213647.1	207	Tgg/Cgg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69031750	69031750	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	100	452	0	ENST00000288368.4:c.3504+1G>A		p.X1168_splice	ENST00000288368	NM_024870.2	1168																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8460555	8460555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	84	347	0	ENST00000356435.5:c.3731G>A	p.Ser1244Asn	p.S1244N	ENST00000356435		1244	aGc/aAc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53230732	53230732	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	29	293	0	ENST00000375401.3:c.2061G>T	p.Lys687Asn	p.K687N	ENST00000375401	NM_004187.3	687	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	95	857	0	ENST00000269305.4:c.538G>T	p.Glu180Ter	p.E180*	ENST00000269305	NM_001126112.2	180	Gag/Tag																																																																															
AR	367	MSKCC	GRCh37	X	66766261	66766261	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	41	404	0	ENST00000374690.3:c.1273G>T	p.Gly425Trp	p.G425W	ENST00000374690	NM_000044.3	425	Ggg/Tgg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225300	2225300	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0040269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	87	942	0	ENST00000326181.6:c.1387-2A>T		p.X463_splice	ENST00000326181	NM_032271.2	463																																																																																
ERCC2	2068	MSKCC	GRCh37	19	45867035	45867035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	67	596	0	ENST00000391945.4:c.1084G>T	p.Ala362Ser	p.A362S	ENST00000391945	NM_000400.3	362	Gcc/Tcc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86627264	86627265	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	36	347	0	ENST00000274376.6:c.642dup	p.Ser215ValfsTer8	p.S215Vfs*8	ENST00000274376	NM_002890.2	213	-/G																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411155	63411155	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0040269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	55	791	0	ENST00000330258.3:c.2012C>G	p.Ser671Ter	p.S671*	ENST00000330258	NM_152424.3	671	tCa/tGa																																																																															
AR	367	MSKCC	GRCh37	X	66863181	66863181	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	47	592	0	ENST00000374690.3:c.1700C>G	p.Ala567Gly	p.A567G	ENST00000374690	NM_000044.3	567	gCt/gGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	57	267	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0040310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	65	241	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0040310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	73	281	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919691	96919691	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200327514		P-0040310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	86	471	0	ENST00000258439.3:c.572C>T	p.Thr191Met	p.T191M	ENST00000258439	NM_001193304.2	191	aCg/aTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39916526	39916526	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1265777184		P-0040310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	147	553	1	ENST00000378444.4:c.4477C>T	p.Arg1493Trp	p.R1493W	ENST00000378444	NM_001123385.1	1493	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0040310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	181	626	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
AXL	558	MSKCC	GRCh37	19	41727880	41727880	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756018335		P-0040310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	145	615	2	ENST00000301178.4:c.505G>A	p.Val169Met	p.V169M	ENST00000301178	NM_021913.4	169	Gtg/Atg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374890	45374890	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	98	419	0	ENST00000262160.6:c.953A>T	p.Asn318Ile	p.N318I	ENST00000262160	NM_005901.5	318	aAt/aTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0040346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	99	452	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575022	64575022	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0040346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	22	240	0	ENST00000337652.1:c.798+2T>A		p.X266_splice	ENST00000337652	NM_130803.2	266																																																																																
CDH1	999	MSKCC	GRCh37	16	68842410	68842411	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	105	399	0	ENST00000261769.5:c.472dup	p.Ile158AsnfsTer10	p.I158Nfs*10	ENST00000261769	NM_004360.3	157	-/A																																																																															
TET1	80312	MSKCC	GRCh37	10	70442657	70442657	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			14	10	312	0	ENST00000373644.4:c.4979G>T	p.Gly1660Val	p.G1660V	ENST00000373644	NM_030625.2	1660	gGg/gTg																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140165	50140165	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	49	374	0	ENST00000246792.3:c.260A>T	p.Gln87Leu	p.Q87L	ENST00000246792	NM_006270.3	87	cAg/cTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967231	25967231	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	19	299	0	ENST00000435504.4:c.1975G>T	p.Asp659Tyr	p.D659Y	ENST00000435504		659	Gac/Tac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187516923	187516923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	16	313	1	ENST00000441802.2:c.13058C>T	p.Ser4353Phe	p.S4353F	ENST00000441802	NM_005245.3	4353	tCc/tTc																																																																															
ALK	238	MSKCC	GRCh37	2	29543699	29543700	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0040358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	11	383	0	ENST00000389048.3:c.1463_1464insTC	p.Trp489ProfsTer19	p.W489Pfs*19	ENST00000389048	NM_004304.4	488	ggc/ggTCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	527	740	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
RB1	5925	MSKCC	GRCh37	13	48941654	48941654	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs776534331		P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	198	190	0	ENST00000267163.4:c.964G>T	p.Glu322Ter	p.E322*	ENST00000267163	NM_000321.2	322	Gaa/Taa																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72076827	72076827	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	558	381	0	ENST00000357731.5:c.670G>T	p.Ala224Ser	p.A224S	ENST00000357731	NM_173808.2	224	Gct/Tct																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633514	69633514	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	104	299	0	ENST00000334134.2:c.188G>T	p.Arg63Leu	p.R63L	ENST00000334134	NM_005247.2	63	cGc/cTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29670033	29670033	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	41	336	0	ENST00000358273.4:c.7069G>C	p.Glu2357Gln	p.E2357Q	ENST00000358273	NM_001042492.2	2357	Gag/Cag																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78858880	78858880	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	465	749	1	ENST00000306801.3:c.1915A>T	p.Thr639Ser	p.T639S	ENST00000306801	NM_020761.2	639	Acc/Tcc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37089163	37089163	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	160	402	0	ENST00000231790.2:c.1885G>C	p.Glu629Gln	p.E629Q	ENST00000231790	NM_000249.3	629	Gaa/Caa																																																																															
ATR	545	MSKCC	GRCh37	3	142281357	142281357	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	403	587	0	ENST00000350721.4:c.887C>G	p.Ser296Ter	p.S296*	ENST00000350721	NM_001184.3	296	tCa/tGa																																																																															
KDR	3791	MSKCC	GRCh37	4	55955906	55955906	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	379	531	0	ENST00000263923.4:c.3256A>T	p.Ser1086Cys	p.S1086C	ENST00000263923	NM_002253.2	1086	Agt/Tgt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522612	176522613	+	missense_variant	Missense_Mutation	DNP	CC	CC	TG			P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	442	768	0	ENST00000292408.4:c.1709_1710delinsTG	p.Pro570Leu	p.P570L	ENST00000292408	NM_213647.1	570	cCC/cTG																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680791	30680791	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1366797290		P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	200	574	0	ENST00000376406.3:c.928C>T	p.Pro310Ser	p.P310S	ENST00000376406	NM_014641.2	310	Cct/Tct																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508148	106508148	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	113	328	1	ENST00000359195.3:c.142C>A	p.Gln48Lys	p.Q48K	ENST00000359195	NM_002649.2	48	Cag/Aag																																																																															
MET	4233	MSKCC	GRCh37	7	116435715	116435715	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	120	417	0	ENST00000397752.3:c.3807del	p.Phe1269LeufsTer8	p.F1269Lfs*8	ENST00000397752	NM_000245.2	1269	Ttt/tt																																																																															
SMO	6608	MSKCC	GRCh37	7	128852084	128852084	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1327533871		P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	284	826	0	ENST00000249373.3:c.2156G>A	p.Trp719Ter	p.W719*	ENST00000249373	NM_005631.4	719	tGg/tAg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117859911	117859911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	178	242	0	ENST00000297338.2:c.1724G>T	p.Gly575Val	p.G575V	ENST00000297338	NM_006265.2	575	gGa/gTa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522612	176522612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	442	768	0	ENST00000292408.4:c.1709C>T	p.Pro570Leu	p.P570L	ENST00000292408	NM_213647.1	570	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	803	764	1	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786202918		P-0040448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	246	454	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41420104	41420104	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0040448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	435	278	1	ENST00000373198.4:c.217T>A	p.Ser73Thr	p.S73T	ENST00000373198	NM_133170.3	73	Tct/Act																																																																															
MSH3	4437	MSKCC	GRCh37	5	80063814	80063814	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	201	486	1	ENST00000265081.6:c.1959A>C	p.Gln653His	p.Q653H	ENST00000265081	NM_002439.4	653	caA/caC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	79	373	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	133	610	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969848	81969848	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs568724894		P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	108	542	1	ENST00000359376.3:c.2917G>A	p.Asp973Asn	p.D973N	ENST00000359376	NM_002661.3	973	Gac/Aac																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	127	757	1	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175642	112175642	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	48	263	0	ENST00000257430.4:c.4351G>T	p.Glu1451Ter	p.E1451*	ENST00000257430	NM_000038.5	1451	Gaa/Taa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670255	134670255	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1426484610		P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	70	469	0	ENST00000398015.3:c.166C>T	p.Arg56Cys	p.R56C	ENST00000398015	NM_004441.4	56	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112116598	112116598	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs137854577		P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	46	288	0	ENST00000257430.4:c.643C>T	p.Gln215Ter	p.Q215*	ENST00000257430	NM_000038.5	215	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911561	114911561	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	91	440	0	ENST00000543371.1:c.1079A>C	p.Tyr360Ser	p.Y360S	ENST00000543371	NM_001198531.1	360	tAt/tCt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274222	10274222	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	53	403	0	ENST00000330684.3:c.47T>C	p.Leu16Pro	p.L16P	ENST00000330684	NM_001134407.1	16	cTg/cCg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120123	70120124	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	41	169	0	ENST00000245479.2:c.1126dup	p.Gln376ProfsTer202	p.Q376Pfs*202	ENST00000245479	NM_000346.3	375	-/C																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604674	48604674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	61	340	0	ENST00000342988.3:c.1496G>A	p.Cys499Tyr	p.C499Y	ENST00000342988	NM_005359.5	499	tGc/tAc																																																																															
SMO	6608	MSKCC	GRCh37	7	128849216	128849216	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755295928		P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	98	494	0	ENST00000249373.3:c.1444C>T	p.Arg482Cys	p.R482C	ENST00000249373	NM_005631.4	482	Cgc/Tgc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137323752	137323752	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	121	748	0	ENST00000481739.1:c.1045G>T	p.Val349Leu	p.V349L	ENST00000481739	NM_002957.4	349	Gtg/Ttg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068939	30068939	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	177	618	0	ENST00000331968.5:c.1990G>T	p.Gly664Ter	p.G664*	ENST00000331968	NM_002742.2	664	Gga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	210	879	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0040510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	155	375	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194884	29194885	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0040510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	192	793	0	ENST00000240100.2:c.843_844delinsTT	p.Gln281_Ala282delinsHisSer	p.Q281_A282delinsHS	ENST00000240100	NM_001394.6	281	caGGcg/caTTcg																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29207717	29207717	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1268692884		P-0040510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	200	691	0	ENST00000240100.2:c.79G>A	p.Gly27Ser	p.G27S	ENST00000240100	NM_001394.6	27	Ggc/Agc																																																																															
ABL1	25	MSKCC	GRCh37	9	133750438	133750438	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0040510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	171	541	0	ENST00000318560.5:c.1269G>T	p.Trp423Cys	p.W423C	ENST00000318560	NM_005157.4	423	tgG/tgT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0040513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	166	447	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95584087	95584088	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAATCTAAGAAAATTATACA			P-0040513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	21	256	0	ENST00000343455.3:c.1377-16_1380dup	p.Ile461CysfsTer7	p.I461Cfs*7	ENST00000343455	NM_177438.2	460	-/TGTATAATTTTCTTAGATTG																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138474823	138474823	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0040513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	17	285	0	ENST00000289153.2:c.172-2A>G		p.X58_splice	ENST00000289153	NM_006219.2	58																																																																																
PARK2	5071	MSKCC	GRCh37	6	161969888	161969888	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	36	487	0	ENST00000366898.1:c.1081G>A	p.Gly361Arg	p.G361R	ENST00000366898	NM_004562.2	361	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0040596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	166	754	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0040596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	81	299	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247328	153247328	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	178	354	0	ENST00000281708.4:c.1474C>T	p.Gln492Ter	p.Q492*	ENST00000281708	NM_033632.3	492	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0040596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	143	709	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
GATA1	2623	MSKCC	GRCh37	X	48652464	48652464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	293	513	1	ENST00000376670.3:c.1135C>A	p.Leu379Ile	p.L379I	ENST00000376670	NM_002049.3	379	Ctc/Atc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532535	63532535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	87	910	0	ENST00000307078.5:c.2044G>A	p.Asp682Asn	p.D682N	ENST00000307078	NM_004655.3	682	Gac/Aac																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749499	41749499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	138	641	0	ENST00000226382.2:c.296G>A	p.Arg99Gln	p.R99Q	ENST00000226382	NM_003924.3	99	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	55	369	0	ENST00000257430.4:c.4128del	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/ta																																																																															
NF2	4771	MSKCC	GRCh37	22	30035103	30035103	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	65	453	0	ENST00000338641.4:c.265G>T	p.Glu89Ter	p.E89*	ENST00000338641	NM_000268.3	89	Gaa/Taa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729153	66729153	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519856		P-0040744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	65	576	0	ENST00000307102.5:c.361T>A	p.Cys121Ser	p.C121S	ENST00000307102	NM_002755.3	121	Tgc/Agc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852239	63852239	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	77	520	0	ENST00000279873.7:c.3017T>A	p.Ile1006Asn	p.I1006N	ENST00000279873	NM_032199.2	1006	aTt/aAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438566	49438566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	58	665	0	ENST00000301067.7:c.4924G>A	p.Asp1642Asn	p.D1642N	ENST00000301067	NM_003482.3	1642	Gat/Aat																																																																															
DIS3	22894	MSKCC	GRCh37	13	73336063	73336063	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0040744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	25	165	0	ENST00000377767.4:c.2340A>C	p.Arg780Ser	p.R780S	ENST00000377767	NM_014953.3	780	agA/agC																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729149	66729149	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	60	570	0	ENST00000307102.5:c.357T>G	p.His119Gln	p.H119Q	ENST00000307102	NM_002755.3	119	caT/caG																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105590	11105591	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0040744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	74	665	1	ENST00000344626.4:c.1506_1507delinsTT	p.Lys502_Ala503delinsAsnSer	p.K502_A503delinsNS	ENST00000344626	NM_003072.3	502	aaGGca/aaTTca																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	157	406	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934874		P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	422	850	0	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361214	66361214	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375878596		P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	21	352	0	ENST00000273854.3:c.958G>A	p.Gly320Ser	p.G320S	ENST00000273854	NM_004439.5	320	Ggc/Agc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857127	9857127	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs976259560		P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	134	375	0	ENST00000330684.3:c.4274C>T	p.Ser1425Leu	p.S1425L	ENST00000330684	NM_001134407.1	1425	tCg/tTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231380	98231380	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372555269		P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	279	668	0	ENST00000331920.6:c.1903G>A	p.Asp635Asn	p.D635N	ENST00000331920	NM_000264.3	635	Gac/Aac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991700	72991700	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62639304		P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	10	207	0	ENST00000268489.5:c.2345C>T	p.Ala782Val	p.A782V	ENST00000268489	NM_006885.3	782	gCg/gTg																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631917	90631918	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs780120934		P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	145	727	3	ENST00000330062.3:c.435dup	p.Thr146AspfsTer126	p.T146Dfs*126	ENST00000330062	NM_002168.2	145	-/G																																																																															
TSC2	7249	MSKCC	GRCh37	16	2133695	2133695	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	68	607	0	ENST00000219476.3:c.3884-1G>T		p.X1295_splice	ENST00000219476	NM_000548.3	1295																																																																																
IGF1	3479	MSKCC	GRCh37	12	102869481	102869481	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	94	538	0	ENST00000307046.8:c.160T>C	p.Cys54Arg	p.C54R	ENST00000307046	NM_001111285.1	54	Tgc/Cgc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115111981	115111981	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	125	737	0	ENST00000257566.3:c.1759C>A	p.Leu587Met	p.L587M	ENST00000257566	NM_016569.3	587	Ctg/Atg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492880	56492881	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAGC			P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	146	375	0	ENST00000407977.2:c.55_58dup	p.Thr20SerfsTer21	p.T20Sfs*21	ENST00000407977		20	acc/aGCTAcc																																																																															
CARM1	10498	MSKCC	GRCh37	19	10982523	10982523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	12	86	0	ENST00000327064.4:c.145C>T	p.Arg49Trp	p.R49W	ENST00000327064	NM_199141.1	49	Cgg/Tgg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57474016	57474016	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	40	317	0	ENST00000371085.3:c.233A>G	p.Gln78Arg	p.Q78R	ENST00000371085	NM_000516.4	78	cAg/cGg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851735	134851735	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867526874		P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	74	569	0	ENST00000398015.3:c.1141C>T	p.Pro381Ser	p.P381S	ENST00000398015	NM_004441.4	381	Ccc/Tcc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0040888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	297	450	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0040888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	102	473	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120459130	120459130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	276	532	0	ENST00000256646.2:c.6215C>T	p.Pro2072Leu	p.P2072L	ENST00000256646	NM_024408.3	2072	cCa/cTa																																																																															
SMYD3	64754	MSKCC	GRCh37	1	245927432	245927432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	71	424	0	ENST00000388985.4:c.1096C>T	p.His366Tyr	p.H366Y	ENST00000388985		366	Cat/Tat																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732896	74732896	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	64	247	0	ENST00000359995.5:c.347G>C	p.Gly116Ala	p.G116A	ENST00000359995	NM_001195427.1	116	gGa/gCa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31016208	31016209	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0040888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	137	308	0	ENST00000375687.4:c.455dup	p.Tyr152Ter	p.Y152*	ENST00000375687	NM_015338.5	152	tac/tAac																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670840	134670840	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	56	371	0	ENST00000398015.3:c.751G>C	p.Gly251Arg	p.G251R	ENST00000398015	NM_004441.4	251	Ggg/Cgg																																																																															
MED12	9968	MSKCC	GRCh37	X	70351431	70351431	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	90	481	0	ENST00000374080.3:c.4080del	p.Leu1361TrpfsTer6	p.L1361Wfs*6	ENST00000374080		1360	tCc/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	177	427	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101271	27101298	+	frameshift_variant	Frame_Shift_Del	DEL	CCCAGGGCCCCGCCTATCATGGCGTGAA	CCCAGGGCCCCGCCTATCATGGCGTGAA	-			P-0040934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	123	744	0	ENST00000324856.7:c.4555_4582del	p.Gln1519GlufsTer37	p.Q1519Efs*37	ENST00000324856	NM_006015.4	1518	cCCCAGGGCCCCGCCTATCATGGCGTGAAc/cc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851456	63851456	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	233	531	1	ENST00000279873.7:c.2234C>A	p.Ala745Glu	p.A745E	ENST00000279873	NM_032199.2	745	gCg/gAg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646238	3646238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	367	952	0	ENST00000294008.3:c.1840G>T	p.Asp614Tyr	p.D614Y	ENST00000294008	NM_032444.2	614	Gac/Tac																																																																															
FLT4	2324	MSKCC	GRCh37	5	180038357	180038357	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	296	737	0	ENST00000261937.6:c.3660C>A	p.Ser1220Arg	p.S1220R	ENST00000261937	NM_182925.4	1220	agC/agA																																																																															
ATM	472	MSKCC	GRCh37	11	108155174	108155174	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	151	364	0	ENST00000278616.4:c.3970del	p.Ser1324ValfsTer25	p.S1324Vfs*25	ENST00000278616	NM_000051.3	1323	Aaa/aa																																																																															
ATM	472	MSKCC	GRCh37	11	108155178	108155178	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1456873569		P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	156	347	0	ENST00000278616.4:c.3971G>T	p.Ser1324Ile	p.S1324I	ENST00000278616	NM_000051.3	1324	aGt/aTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	935	332	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
MGA	23269	MSKCC	GRCh37	15	42041860	42041860	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	110	382	0	ENST00000219905.7:c.6055G>T	p.Glu2019Ter	p.E2019*	ENST00000219905	NM_001164273.1	2019	Gaa/Taa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274171	10274171	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	521	452	0	ENST00000330684.3:c.98C>A	p.Ala33Glu	p.A33E	ENST00000330684	NM_001134407.1	33	gCg/gAg																																																																															
NF1	4763	MSKCC	GRCh37	17	29556068	29556068	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	175	215	0	ENST00000358273.4:c.2435T>C	p.Ile812Thr	p.I812T	ENST00000358273	NM_001042492.2	812	aTt/aCt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955065	17955065	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	264	720	0	ENST00000458235.1:c.162C>G	p.Cys54Trp	p.C54W	ENST00000458235	NM_000215.3	54	tgC/tgG																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794793	242794793	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	301	444	0	ENST00000334409.5:c.416G>C	p.Arg139Pro	p.R139P	ENST00000334409	NM_005018.2	139	cGg/cCg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017790	31017790	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs564841799		P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	611	643	0	ENST00000375687.4:c.652C>T	p.Arg218Cys	p.R218C	ENST00000375687	NM_015338.5	218	Cgt/Tgt																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748143	41748143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	252	316	0	ENST00000226382.2:c.626G>T	p.Gly209Val	p.G209V	ENST00000226382	NM_003924.3	209	gGg/gTg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056599	26056599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	90	203	0	ENST00000343677.2:c.58G>T	p.Val20Leu	p.V20L	ENST00000343677	NM_005319.3	20	Gta/Tta																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739584	145739584	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	506	713	0	ENST00000428558.2:c.1867C>A	p.Arg623Ser	p.R623S	ENST00000428558	NM_004260.3	623	Cgc/Agc																																																																															
SYK	6850	MSKCC	GRCh37	9	93607730	93607730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	83	209	0	ENST00000375746.1:c.432G>T	p.Glu144Asp	p.E144D	ENST00000375746	NM_001174167.1	144	gaG/gaT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039905	47039905	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	479	694	0	ENST00000329236.7:c.1014G>T	p.Gln338His	p.Q338H	ENST00000329236	NM_001204466.1	338	caG/caT																																																																															
AR	367	MSKCC	GRCh37	X	66863189	66863189	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	325	465	0	ENST00000374690.3:c.1708T>C	p.Cys570Arg	p.C570R	ENST00000374690	NM_000044.3	570	Tgt/Cgt																																																																															
ATRX	546	MSKCC	GRCh37	X	76849187	76849187	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	473	260	1	ENST00000373344.5:c.6089C>A	p.Ala2030Glu	p.A2030E	ENST00000373344	NM_000489.3	2030	gCa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0041053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	462	588	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-	rs397517086		P-0041053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	223	643	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894898	101894898	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	32	240	0	ENST00000374994.4:c.451C>A	p.Arg151Ser	p.R151S	ENST00000374994	NM_004612.2	151	Cgc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0041206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	75	479	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038828	47038828	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	233	443	0	ENST00000329236.7:c.604C>T	p.Gln202Ter	p.Q202*	ENST00000329236	NM_001204466.1	202	Cag/Tag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18443910	18443910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	17	353	1	ENST00000266497.5:c.883G>A	p.Asp295Asn	p.D295N	ENST00000266497		295	Gat/Aat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164750	47164751	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	119	364	0	ENST00000409792.3:c.1375dup	p.Ser459PhefsTer2	p.S459Ffs*2	ENST00000409792	NM_014159.6	459	tct/tTct																																																																															
MED12	9968	MSKCC	GRCh37	X	70356124	70356153	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGAGCAGGGTCTACAGGTTTCCACCAAACA	GGAGCAGGGTCTACAGGTTTCCACCAAACA	-			P-0041206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	149	400	0	ENST00000374080.3:c.5026-6_5049del		p.X1676_splice	ENST00000374080		1676																																																																																
MITF	4286	MSKCC	GRCh37	3	69928340	69928340	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	43	426	0	ENST00000352241.4:c.160A>G	p.Thr54Ala	p.T54A	ENST00000352241	NM_198159.2	54	Aca/Gca																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189389	56189389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	47	544	0	ENST00000399503.3:c.4421C>G	p.Pro1474Arg	p.P1474R	ENST00000399503	NM_005921.1	1474	cCt/cGt																																																																															
PGR	5241	MSKCC	GRCh37	11	100998393	100998394	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0041250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	34	128	1	ENST00000325455.5:c.1408_1409delinsAA	p.Pro470Asn	p.P470N	ENST00000325455	NM_001202474.3	470	CCc/AAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578522	7578522	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	183	709	0	ENST00000269305.4:c.408A>T	p.Gln136His	p.Q136H	ENST00000269305	NM_001126112.2	136	caA/caT																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266748	18266748	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs929809973		P-0041250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	47	463	0	ENST00000222254.8:c.59C>T	p.Pro20Leu	p.P20L	ENST00000222254	NM_005027.3	20	cCg/cTg																																																																															
AKT2	208	MSKCC	GRCh37	19	40762959	40762959	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs387906659		P-0041250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	126	459	0	ENST00000392038.2:c.49G>A	p.Glu17Lys	p.E17K	ENST00000392038	NM_001626.4	17	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951962	178951962	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	35	452	0	ENST00000263967.3:c.3017T>G	p.Leu1006Arg	p.L1006R	ENST00000263967	NM_006218.2	1006	cTt/cGt																																																																															
KIT	3815	MSKCC	GRCh37	4	55565871	55565871	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767174569		P-0041250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	30	464	1	ENST00000288135.5:c.695C>T	p.Thr232Met	p.T232M	ENST00000288135	NM_000222.2	232	aCg/aTg																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997760	149997760	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	198	428	0	ENST00000253339.5:c.2707C>T	p.Gln903Ter	p.Q903*	ENST00000253339		903	Cag/Tag																																																																															
ATRX	546	MSKCC	GRCh37	X	76938361	76938361	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	24	550	0	ENST00000373344.5:c.2387A>G	p.Lys796Arg	p.K796R	ENST00000373344	NM_000489.3	796	aAa/aGa																																																																															
ATRX	546	MSKCC	GRCh37	X	76938763	76938763	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	17	571	0	ENST00000373344.5:c.1985C>A	p.Thr662Lys	p.T662K	ENST00000373344	NM_000489.3	662	aCa/aAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0041286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	72	440	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0041286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	46	427	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	138	664	0	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729609	41729609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	120	627	0	ENST00000242208.4:c.920G>A	p.Arg307Gln	p.R307Q	ENST00000242208	NM_002192.2	307	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175491	112175492	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0041286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	79	447	0	ENST00000257430.4:c.4201_4202dup	p.Ala1402LeufsTer14	p.A1402Lfs*14	ENST00000257430	NM_000038.5	1400	-/AT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69012043	69012043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	99	610	0	ENST00000288368.4:c.2680G>A	p.Glu894Lys	p.E894K	ENST00000288368	NM_024870.2	894	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0041325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	48	491	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519922		P-0041325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	82	544	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182641	38182641	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs387907272		P-0041325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	27	270	0	ENST00000396334.3:c.794T>C	p.Leu265Pro	p.L265P	ENST00000396334	NM_002468.4	265	cTg/cCg																																																																															
ETV6	2120	MSKCC	GRCh37	12	11992223	11992223	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	27	331	0	ENST00000396373.4:c.313C>G	p.Arg105Gly	p.R105G	ENST00000396373	NM_001987.4	105	Cga/Gga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152050	11152053	+	frameshift_variant	Frame_Shift_Del	DEL	GCAA	GCAA	-			P-0041325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	77	541	0	ENST00000344626.4:c.4240_4243del	p.Lys1414GlufsTer48	p.K1414Efs*48	ENST00000344626	NM_003072.3	1413	cGCAAg/cg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216187	36216187	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs750568281		P-0041325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	108	626	0	ENST00000222270.7:c.3595G>T	p.Gly1199Cys	p.G1199C	ENST00000222270	NM_014727.1	1199	Ggc/Tgc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812299	212812299	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	21	273	0	ENST00000342788.4:c.277C>G	p.Gln93Glu	p.Q93E	ENST00000342788	NM_005235.2	93	Cag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	132	830	1	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178948160	178948160	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	63	215	0	ENST00000263967.3:c.2932G>C	p.Glu978Gln	p.E978Q	ENST00000263967	NM_006218.2	978	Gag/Cag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240695	55240695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764359156		P-0041371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	166	848	1	ENST00000275493.2:c.1939G>A	p.Ala647Thr	p.A647T	ENST00000275493	NM_005228.3	647	Gcc/Acc																																																																															
ATRX	546	MSKCC	GRCh37	X	76845334	76845334	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	80	340	0	ENST00000373344.5:c.6187G>C	p.Glu2063Gln	p.E2063Q	ENST00000373344	NM_000489.3	2063	Gaa/Caa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139407859	139407859	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756642176		P-0041371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	76	605	0	ENST00000277541.6:c.2338C>T	p.Arg780Trp	p.R780W	ENST00000277541	NM_017617.3	780	Cgg/Tgg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374132	118374132	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	101	400	0	ENST00000534358.1:c.7525G>C	p.Glu2509Gln	p.E2509Q	ENST00000534358	NM_005933.3	2509	Gaa/Caa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375590	118375590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	73	312	1	ENST00000534358.1:c.8983G>T	p.Asp2995Tyr	p.D2995Y	ENST00000534358	NM_005933.3	2995	Gat/Tat																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14024607	14024607	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	91	333	0	ENST00000311895.7:c.833G>T	p.Gly278Val	p.G278V	ENST00000311895	NM_005236.2	278	gGa/gTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29508746	29508746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	174	437	0	ENST00000358273.4:c.673G>A	p.Glu225Lys	p.E225K	ENST00000358273	NM_001042492.2	225	Gaa/Aaa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575553	64575553	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	214	535	0	ENST00000337652.1:c.479C>G	p.Ser160Cys	p.S160C	ENST00000337652	NM_130803.2	160	tCc/tGc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32968928	32968928	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	533	306	0	ENST00000380152.3:c.9359T>G	p.Ile3120Ser	p.I3120S	ENST00000380152		3120	aTt/aGt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004792	16004792	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	193	566	0	ENST00000268712.3:c.2462C>A	p.Ser821Tyr	p.S821Y	ENST00000268712	NM_006311.3	821	tCt/tAt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067371	37067371	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	148	421	0	ENST00000231790.2:c.1282G>T	p.Asp428Tyr	p.D428Y	ENST00000231790	NM_000249.3	428	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	118	498	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	44	373	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	139	772	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																															
BCL6	604	MSKCC	GRCh37	3	187451474	187451474	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145456310		P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	112	411	1	ENST00000232014.4:c.8C>T	p.Ser3Leu	p.S3L	ENST00000232014	NM_001130845.1	3	tCg/tTg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502828	186502828	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	107	544	0	ENST00000323963.5:c.286G>C	p.Glu96Gln	p.E96Q	ENST00000323963		96	Gag/Cag																																																																															
RAD21	5885	MSKCC	GRCh37	8	117868516	117868516	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	21	284	0	ENST00000297338.2:c.826G>C	p.Asp276His	p.D276H	ENST00000297338	NM_006265.2	276	Gat/Cat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445575	49445575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	126	934	1	ENST00000301067.7:c.1891G>A	p.Glu631Lys	p.E631K	ENST00000301067	NM_003482.3	631	Gag/Aag																																																																															
EZH1	2145	MSKCC	GRCh37	17	40854926	40854926	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	156	631	0	ENST00000428826.2:c.2152C>T	p.Gln718Ter	p.Q718*	ENST00000428826		718	Caa/Taa																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741835	17741875	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCGCCCCCTGGCGCCGCAGCCGCCTTCTATGCGCCGGGC	CCGCGCCCCCTGGCGCCGCAGCCGCCTTCTATGCGCCGGGC	-			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	58	213	0	ENST00000250003.3:c.510_550del	p.Pro171AlafsTer93	p.P171Afs*93	ENST00000250003	NM_002478.4	169	gCCGCGCCCCCTGGCGCCGCAGCCGCCTTCTATGCGCCGGGC/g																																																																															
SDHD	6392	MSKCC	GRCh37	11	111965548	111965551	+	frameshift_variant	Frame_Shift_Del	DEL	ACTG	ACTG	-			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	45	229	0	ENST00000375549.3:c.337_340del	p.Asp113MetfsTer21	p.D113Mfs*21	ENST00000375549	NM_003002.3	112	ACTGac/ac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109925	115109925	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs757838938		P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	104	673	0	ENST00000257566.3:c.1953C>G	p.Asp651Glu	p.D651E	ENST00000257566	NM_016569.3	651	gaC/gaG																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135409	30135409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	57	383	1	ENST00000331968.5:c.409G>T	p.Ala137Ser	p.A137S	ENST00000331968	NM_002742.2	137	Gcc/Tcc																																																																															
MGA	23269	MSKCC	GRCh37	15	41989222	41989222	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	60	427	0	ENST00000219905.7:c.2013+1G>T		p.X671_splice	ENST00000219905	NM_001164273.1	671																																																																																
EZH1	2145	MSKCC	GRCh37	17	40854949	40854949	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	164	627	1	ENST00000428826.2:c.2129G>T	p.Gly710Val	p.G710V	ENST00000428826		710	gGg/gTg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031565	11031565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	112	790	1	ENST00000327064.4:c.1480G>A	p.Glu494Lys	p.E494K	ENST00000327064	NM_199141.1	494	Gaa/Aaa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52668664	52668664	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1343496358		P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	99	563	0	ENST00000394830.3:c.1255G>A	p.Asp419Asn	p.D419N	ENST00000394830	NM_018313.4	419	Gat/Aat																																																																															
IRF4	3662	MSKCC	GRCh37	6	398910	398910	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	73	537	0	ENST00000380956.4:c.720G>T	p.Arg240Ser	p.R240S	ENST00000380956	NM_001195286.1	240	agG/agT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93964367	93964367	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	66	419	0	ENST00000369303.4:c.2530G>A	p.Asp844Asn	p.D844N	ENST00000369303	NM_004440.3	844	Gat/Aat																																																																															
HGF	3082	MSKCC	GRCh37	7	81392159	81392159	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1241118241		P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	20	302	0	ENST00000222390.5:c.118C>A	p.His40Asn	p.H40N	ENST00000222390	NM_000601.4	40	Cat/Aat																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968088	68968088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	92	520	0	ENST00000288368.4:c.1117G>T	p.Asp373Tyr	p.D373Y	ENST00000288368	NM_024870.2	373	Gat/Tat																																																																															
AGO2	27161	MSKCC	GRCh37	8	141549505	141549505	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	70	490	2	ENST00000220592.5:c.2083G>C	p.Glu695Gln	p.E695Q	ENST00000220592	NM_012154.3	695	Gaa/Caa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410837	63410837	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	93	714	0	ENST00000330258.3:c.2330C>A	p.Thr777Asn	p.T777N	ENST00000330258	NM_152424.3	777	aCc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519981		P-0041582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	226	522	0	ENST00000269305.4:c.712T>G	p.Cys238Gly	p.C238G	ENST00000269305	NM_001126112.2	238	Tgt/Ggt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153253826	153253826	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	117	268	0	ENST00000281708.4:c.907C>T	p.Gln303Ter	p.Q303*	ENST00000281708	NM_033632.3	303	Caa/Taa																																																																															
PAK1	5058	MSKCC	GRCh37	11	77069942	77069942	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0041582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	43	359	0	ENST00000356341.3:c.597+1G>T		p.X199_splice	ENST00000356341	NM_002576.4	199																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81971384	81971384	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	132	396	0	ENST00000359376.3:c.3074A>T	p.His1025Leu	p.H1025L	ENST00000359376	NM_002661.3	1025	cAc/cTc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39751860	39751860	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	31	379	0	ENST00000361337.2:c.2221G>C	p.Glu741Gln	p.E741Q	ENST00000361337	NM_003286.2	741	Gag/Cag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31508819	31508819	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	42	556	0	ENST00000344624.3:c.1496C>G	p.Ser499Cys	p.S499C	ENST00000344624		499	tCt/tGt																																																																															
HGF	3082	MSKCC	GRCh37	7	81355209	81355209	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	36	166	0	ENST00000222390.5:c.1165C>T	p.Gln389Ter	p.Q389*	ENST00000222390	NM_000601.4	389	Caa/Taa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395003	139395003	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0041582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	86	401	0	ENST00000277541.6:c.5934+1G>A		p.X1978_splice	ENST00000277541	NM_017617.3	1978																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0041601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	76	430	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212495212	212495212	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs758422014		P-0041601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	56	392	1	ENST00000342788.4:c.2054C>A	p.Ala685Asp	p.A685D	ENST00000342788	NM_005235.2	685	gCc/gAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176722220	176722220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	50	503	0	ENST00000439151.2:c.7851G>T	p.Leu2617Phe	p.L2617F	ENST00000439151	NM_022455.4	2617	ttG/ttT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0041615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	100	368	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0041615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	70	309	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519378	176519378	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148292303		P-0041615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	159	673	1	ENST00000292408.4:c.784G>A	p.Val262Met	p.V262M	ENST00000292408	NM_213647.1	262	Gtg/Atg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865761	57865761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	57	704	0	ENST00000228682.2:c.3238C>A	p.Pro1080Thr	p.P1080T	ENST00000228682	NM_005269.2	1080	Ccc/Acc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72058653	72058653	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0041615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	42	279	0	ENST00000357731.5:c.789-2A>T		p.X263_splice	ENST00000357731	NM_173808.2	263																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120458146	120458146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	71	647	1	ENST00000256646.2:c.7199G>T	p.Arg2400Leu	p.R2400L	ENST00000256646	NM_024408.3	2400	cGa/cTa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495064	56495064	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1170241416		P-0041615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	115	674	1	ENST00000267101.3:c.3421A>T	p.Thr1141Ser	p.T1141S	ENST00000267101	NM_001982.3	1141	Act/Tct																																																																															
SOS1	6654	MSKCC	GRCh37	2	39285815	39285815	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0041615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	104	450	0	ENST00000402219.2:c.344A>T	p.Lys115Met	p.K115M	ENST00000402219	NM_005633.3	115	aAg/aTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039418	47039418	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	177	634	1	ENST00000329236.7:c.810C>A	p.Phe270Leu	p.F270L	ENST00000329236	NM_001204466.1	270	ttC/ttA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1325	151	169	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398262	25398262	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913538		P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	213	116	0	ENST00000256078.4:c.57G>C	p.Leu19Phe	p.L19F	ENST00000256078	NM_033360.2	19	ttG/ttC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	589	312	0	ENST00000269305.4:c.434T>A	p.Leu145Gln	p.L145Q	ENST00000269305	NM_001126112.2	145	cTg/cAg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476272	88476272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	107	180	0	ENST00000360948.2:c.1860G>A	p.Met620Ile	p.M620I	ENST00000360948	NM_001012338.2	620	atG/atA																																																																															
SUFU	51684	MSKCC	GRCh37	10	104359302	104359302	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587776578		P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	298	153	0	ENST00000369902.3:c.1022+1G>A		p.X341_splice	ENST00000369902	NM_016169.3	341																																																																																
DNMT3A	1788	MSKCC	GRCh37	2	25462077	25462077	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752626029		P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	256	174	0	ENST00000264709.3:c.2330C>T	p.Pro777Leu	p.P777L	ENST00000264709	NM_175629.2	777	cCt/cTt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216463	2216463	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1401443478		P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	164	280	0	ENST00000398665.3:c.2107C>T	p.His703Tyr	p.H703Y	ENST00000398665	NM_032482.2	703	Cac/Tac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223529	36223529	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	185	325	0	ENST00000222270.7:c.6079G>C	p.Glu2027Gln	p.E2027Q	ENST00000222270	NM_014727.1	2027	Gag/Cag																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46608744	46608744	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	146	235	0	ENST00000263734.3:c.2055G>C	p.Lys685Asn	p.K685N	ENST00000263734	NM_001430.4	685	aaG/aaC																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47596691	47596691	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	132	134	0	ENST00000263735.4:c.47C>A	p.Ala16Glu	p.A16E	ENST00000263735	NM_002354.2	16	gCg/gAg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128036845	128036845	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	375	196	0	ENST00000285398.2:c.1634A>G	p.Gln545Arg	p.Q545R	ENST00000285398	NM_000122.1	545	cAg/cGg																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872839	136872839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	191	136	0	ENST00000241393.3:c.659G>A	p.Cys220Tyr	p.C220Y	ENST00000241393	NM_003467.2	220	tGc/tAc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225342966	225342966	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1159640544		P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	394	177	0	ENST00000264414.4:c.2126G>A	p.Arg709Gln	p.R709Q	ENST00000264414	NM_003590.4	709	cGg/cAg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417859	138417859	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	134	141	0	ENST00000289153.2:c.1660G>C	p.Glu554Gln	p.E554Q	ENST00000289153	NM_006219.2	554	Gaa/Caa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138461465	138461465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	122	155	0	ENST00000289153.2:c.556G>A	p.Glu186Lys	p.E186K	ENST00000289153	NM_006219.2	186	Gaa/Aaa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86629109	86629109	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	11	91	0	ENST00000274376.6:c.854G>C	p.Arg285Pro	p.R285P	ENST00000274376	NM_002890.2	285	cGa/cCa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675668	86675668	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	53	79	0	ENST00000274376.6:c.2603+1G>C		p.X868_splice	ENST00000274376	NM_002890.2	868																																																																																
INHBA	3624	MSKCC	GRCh37	7	41729255	41729255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	149	95	0	ENST00000242208.4:c.1274G>T	p.Cys425Phe	p.C425F	ENST00000242208	NM_002192.2	425	tGc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	61	193	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520008		P-0041640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	261	783	0	ENST00000269305.4:c.613T>G	p.Tyr205Asp	p.Y205D	ENST00000269305	NM_001126112.2	205	Tat/Gat																																																																															
APC	324	MSKCC	GRCh37	5	112175015	112175015	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	81	179	0	ENST00000257430.4:c.3724C>T	p.Gln1242Ter	p.Q1242*	ENST00000257430	NM_000038.5	1242	Cag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914339	32914341	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0041640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	113	428	0	ENST00000380152.3:c.5848_5850del	p.Val1950del	p.V1950del	ENST00000380152		1949	gaTGTt/gat																																																																															
CTCF	10664	MSKCC	GRCh37	16	67670703	67670703	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0041640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	236	569	0	ENST00000264010.4:c.1948A>T	p.Lys650Ter	p.K650*	ENST00000264010	NM_006565.3	650	Aag/Tag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71096193	71096194	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	108	361	0	ENST00000318789.4:c.563dup	p.Met188IlefsTer107	p.M188Ifs*107	ENST00000318789	NM_032682.5	188	atg/atTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023438	27023438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	82	434	0	ENST00000324856.7:c.544G>T	p.Ala182Ser	p.A182S	ENST00000324856	NM_006015.4	182	Gca/Tca																																																																															
MGA	23269	MSKCC	GRCh37	15	42058799	42058799	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	52	365	0	ENST00000219905.7:c.8519A>G	p.Asp2840Gly	p.D2840G	ENST00000219905	NM_001164273.1	2840	gAc/gGc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993878	72993878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	89	579	0	ENST00000268489.5:c.167C>T	p.Pro56Leu	p.P56L	ENST00000268489	NM_006885.3	56	cCc/cTc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81934366	81934367	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0041730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	96	622	2	ENST00000359376.3:c.1343_1344delinsTT	p.Arg448Leu	p.R448L	ENST00000359376	NM_002661.3	448	cGG/cTT																																																																															
STK11	6794	MSKCC	GRCh37	19	1220400	1220400	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1359582062		P-0041730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	123	739	1	ENST00000326873.7:c.493G>T	p.Glu165Ter	p.E165*	ENST00000326873	NM_000455.4	165	Gag/Tag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469627	25469627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	148	673	1	ENST00000264709.3:c.1141G>T	p.Gly381Trp	p.G381W	ENST00000264709	NM_175629.2	381	Ggg/Tgg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519963		P-0041730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	28	401	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928908	49928908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	138	834	3	ENST00000296474.3:c.3458C>A	p.Pro1153His	p.P1153H	ENST00000296474	NM_002447.2	1153	cCt/cAt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521331	8521331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	59	466	0	ENST00000356435.5:c.907G>A	p.Val303Ile	p.V303I	ENST00000356435		303	Gtt/Att																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227712	53227712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	122	338	1	ENST00000375401.3:c.2476G>A	p.Val826Met	p.V826M	ENST00000375401	NM_004187.3	826	Gtg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0041835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	101	679	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	1063	479	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123220428	123220428	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	96	553	0	ENST00000218089.9:c.3085C>T	p.Gln1029Ter	p.Q1029*	ENST00000218089	NM_001042749.1	1029	Cag/Tag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89882319	89882319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	68	682	0	ENST00000389301.3:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000389301	NM_000135.2	52	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380277	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913238		P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2047	208	637	1	ENST00000256078.4:c.181C>G	p.Gln61Glu	p.Q61E	ENST00000256078	NM_033360.2	61	Caa/Gaa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2227019	2227019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	128	603	0	ENST00000398665.3:c.4499C>G	p.Ser1500Cys	p.S1500C	ENST00000398665	NM_032482.2	1500	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs863224499		P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	509	916	1	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
CYLD	1540	MSKCC	GRCh37	16	50813626	50813626	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149427272		P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	249	806	1	ENST00000398568.2:c.1180C>T	p.Arg394Cys	p.R394C	ENST00000398568	NM_001042412.1	394	Cgt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55266490	55266490	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	89	763	0	ENST00000275493.2:c.2782G>C	p.Glu928Gln	p.E928Q	ENST00000275493	NM_005228.3	928	Gag/Cag																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169940469	169940469	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1082973		P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	49	560	0	ENST00000295797.4:c.12G>C	p.Gln4His	p.Q4H	ENST00000295797	NM_002740.5	4	caG/caC																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390623	139390623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	98	1157	1	ENST00000277541.6:c.7568C>T	p.Ser2523Leu	p.S2523L	ENST00000277541	NM_017617.3	2523	tCg/tTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8105995	8105995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	156	631	0	ENST00000346208.3:c.815C>T	p.Pro272Leu	p.P272L	ENST00000346208		272	cCa/cTa																																																																															
ALK	238	MSKCC	GRCh37	2	29446232	29446232	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	196	759	1	ENST00000389048.3:c.3335C>A	p.Pro1112Gln	p.P1112Q	ENST00000389048	NM_004304.4	1112	cCg/cAg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430001	78430001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	37	313	0	ENST00000370768.2:c.878G>A	p.Arg293Lys	p.R293K	ENST00000370768	NM_003902.3	293	aGa/aAa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243727042	243727042	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	80	461	0	ENST00000263826.5:c.928C>G	p.Pro310Ala	p.P310A	ENST00000263826	NM_005465.4	310	Cca/Gca																																																																															
YAP1	10413	MSKCC	GRCh37	11	102076704	102076704	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	213	646	0	ENST00000282441.5:c.883A>T	p.Met295Leu	p.M295L	ENST00000282441	NM_001130145.2	295	Atg/Ttg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118380809	118380809	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	35	463	0	ENST00000534358.1:c.11047C>G	p.Gln3683Glu	p.Q3683E	ENST00000534358	NM_005933.3	3683	Cag/Gag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	498227	498227	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	49	393	0	ENST00000399788.2:c.31del	p.Ala11ArgfsTer55	p.A11Rfs*55	ENST00000399788	NM_001042603.1	11	Gcg/cg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18650628	18650628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	59	560	1	ENST00000266497.5:c.2839G>T	p.Gly947Cys	p.G947C	ENST00000266497		947	Ggc/Tgc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748729	43748729	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	108	1048	0	ENST00000382044.4:c.2077C>A	p.Pro693Thr	p.P693T	ENST00000382044	NM_001141980.1	693	Ccg/Acg																																																																															
CD276	80381	MSKCC	GRCh37	15	74000683	74000683	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	244	783	1	ENST00000318443.5:c.1373A>T	p.Gln458Leu	p.Q458L	ENST00000318443	NM_001024736.1	458	cAg/cTg																																																																															
BLM	641	MSKCC	GRCh37	15	91298083	91298084	+	missense_variant	Missense_Mutation	DNP	TC	TC	AT			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	58	474	0	ENST00000355112.3:c.1002_1003delinsAT	p.Leu335Phe	p.L335F	ENST00000355112	NM_000057.2	334	gtTCtt/gtATtt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99491803	99491803	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	70	493	1	ENST00000268035.6:c.3588G>T	p.Trp1196Cys	p.W1196C	ENST00000268035	NM_000875.3	1196	tgG/tgT																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658581	3658581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1295	208	1034	0	ENST00000294008.3:c.385C>A	p.Gln129Lys	p.Q129K	ENST00000294008	NM_032444.2	129	Caa/Aaa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868347	56868347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	90	414	0	ENST00000308159.5:c.1730G>T	p.Ser577Ile	p.S577I	ENST00000308159	NM_014669.4	577	aGc/aTc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40872357	40872357	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	147	946	0	ENST00000428826.2:c.598G>T	p.Gly200Ter	p.G200*	ENST00000428826		200	Gga/Tga																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217051	2217051	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	150	930	1	ENST00000398665.3:c.2506G>T	p.Gly836Trp	p.G836W	ENST00000398665	NM_032482.2	836	Ggg/Tgg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296482	15296482	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	170	1160	0	ENST00000263388.2:c.1960T>C	p.Cys654Arg	p.C654R	ENST00000263388	NM_000435.2	654	Tgt/Cgt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353853	15353853	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	110	715	0	ENST00000263377.2:c.3027A>T	p.Gln1009His	p.Q1009H	ENST00000263377	NM_058243.2	1009	caA/caT																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31376786	31376786	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	185	789	0	ENST00000328111.2:c.781G>T	p.Val261Phe	p.V261F	ENST00000328111	NM_006892.3	261	Gtc/Ttc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919164	178919164	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1223886939		P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	38	255	0	ENST00000263967.3:c.649C>T	p.Pro217Ser	p.P217S	ENST00000263967	NM_006218.2	217	Cca/Tca																																																																															
TP63	8626	MSKCC	GRCh37	3	189604286	189604286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	47	603	0	ENST00000264731.3:c.1453C>G	p.Gln485Glu	p.Q485E	ENST00000264731	NM_003722.4	485	Cag/Gag																																																																															
FYN	2534	MSKCC	GRCh37	6	112041191	112041191	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	211	722	0	ENST00000368678.4:c.64C>A	p.Leu22Met	p.L22M	ENST00000368678		22	Ctg/Atg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975442	13975442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	59	474	0	ENST00000405192.2:c.445C>T	p.His149Tyr	p.H149Y	ENST00000405192	NM_001163147.1	149	Cat/Tat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55266546	55266546	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	78	665	0	ENST00000275493.2:c.2838C>G	p.Ile946Met	p.I946M	ENST00000275493	NM_005228.3	946	atC/atG																																																																															
PREX2	80243	MSKCC	GRCh37	8	69032510	69032510	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs995332079		P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	145	709	0	ENST00000288368.4:c.3584G>A	p.Arg1195Gln	p.R1195Q	ENST00000288368	NM_024870.2	1195	cGa/cAa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70970889	70970889	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	198	646	1	ENST00000276594.2:c.1372C>A	p.His458Asn	p.H458N	ENST00000276594	NM_024504.3	458	Cac/Aac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341821	8341821	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	192	752	0	ENST00000356435.5:c.4819G>T	p.Asp1607Tyr	p.D1607Y	ENST00000356435		1607	Gat/Tat																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401783	139401783	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs754056142		P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	120	1048	0	ENST00000277541.6:c.3617A>G	p.Lys1206Arg	p.K1206R	ENST00000277541	NM_017617.3	1206	aAg/aGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045953	47045953	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	146	1020	0	ENST00000329236.7:c.2514G>C	p.Glu838Asp	p.E838D	ENST00000329236	NM_001204466.1	838	gaG/gaC																																																																															
AR	367	MSKCC	GRCh37	X	66931322	66931322	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	338	661	0	ENST00000374690.3:c.1964A>G	p.Glu655Gly	p.E655G	ENST00000374690	NM_000044.3	655	gAg/gGg																																																																															
BTK	695	MSKCC	GRCh37	X	100608322	100608322	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	190	739	0	ENST00000308731.7:c.1768A>C	p.Ile590Leu	p.I590L	ENST00000308731	NM_000061.2	590	Att/Ctt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123220419	123220419	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	86	523	0	ENST00000218089.9:c.3076A>C	p.Met1026Leu	p.M1026L	ENST00000218089	NM_001042749.1	1026	Atg/Ctg																																																																															
BLM	641	MSKCC	GRCh37	15	91298084	91298084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	58	472	0	ENST00000355112.3:c.1003C>T	p.Leu335Phe	p.L335F	ENST00000355112	NM_000057.2	335	Ctt/Ttt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0041880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	20	856	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0041880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	47	885	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321351	1321351	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763354527		P-0041880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	50	896	2	ENST00000381566.1:c.404C>T	p.Thr135Met	p.T135M	ENST00000381566		135	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0041883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	64	537	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108165756	108165756	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs886039592		P-0041883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	44	480	0	ENST00000278616.4:c.4879C>T	p.Gln1627Ter	p.Q1627*	ENST00000278616	NM_000051.3	1627	Cag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108106405	108106405	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	21	214	0	ENST00000278616.4:c.340A>T	p.Arg114Trp	p.R114W	ENST00000278616	NM_000051.3	114	Agg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108164106	108164106	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0041883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	43	339	0	ENST00000278616.4:c.4678A>T	p.Lys1560Ter	p.K1560*	ENST00000278616	NM_000051.3	1560	Aag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420721	49420721	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	63	857	0	ENST00000301067.7:c.15028G>T	p.Ala5010Ser	p.A5010S	ENST00000301067	NM_003482.3	5010	Gca/Tca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290986	15290986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	45	1124	0	ENST00000263388.2:c.3224G>T	p.Gly1075Val	p.G1075V	ENST00000263388	NM_000435.2	1075	gGc/gTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302295	15302295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	56	1001	0	ENST00000263388.2:c.976G>T	p.Gly326Trp	p.G326W	ENST00000263388	NM_000435.2	326	Ggg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214705	36214705	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	35	824	1	ENST00000222270.7:c.3131G>T	p.Gly1044Val	p.G1044V	ENST00000222270	NM_014727.1	1044	gGc/gTc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267370	198267370	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	63	595	0	ENST00000335508.6:c.1987A>G	p.Thr663Ala	p.T663A	ENST00000335508	NM_012433.2	663	Act/Gct																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790033	40790033	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	62	796	0	ENST00000373198.4:c.2698A>T	p.Met900Leu	p.M900L	ENST00000373198	NM_133170.3	900	Atg/Ttg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101188	41101188	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	76	761	0	ENST00000373198.4:c.1168C>G	p.Pro390Ala	p.P390A	ENST00000373198	NM_133170.3	390	Cca/Gca																																																																															
SETD2	29072	MSKCC	GRCh37	3	47142947	47142947	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0041883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	56	564	0	ENST00000409792.3:c.5015+1G>T		p.X1672_splice	ENST00000409792	NM_014159.6	1672																																																																																
SDHA	6389	MSKCC	GRCh37	5	256470	256470	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3211483		P-0041883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	56	817	0	ENST00000264932.6:c.1930G>A	p.Val644Met	p.V644M	ENST00000264932	NM_004168.2	644	Gtg/Atg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149457681	149457681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	50	840	0	ENST00000286301.3:c.723C>A	p.Asn241Lys	p.N241K	ENST00000286301	NM_005211.3	241	aaC/aaA																																																																															
SMO	6608	MSKCC	GRCh37	7	128851893	128851893	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1199268301		P-0041883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	51	961	0	ENST00000249373.3:c.1965G>C	p.Trp655Cys	p.W655C	ENST00000249373	NM_005631.4	655	tgG/tgC																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032526	47032526	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0041883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	48	398	0	ENST00000329236.7:c.202-1G>C		p.X68_splice	ENST00000329236	NM_001204466.1	68																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0041893-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			354	159	420	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0041893-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			591	337	668	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088646	27088646	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041893-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			764	209	631	0	ENST00000324856.7:c.2255A>G	p.Tyr752Cys	p.Y752C	ENST00000324856	NM_006015.4	752	tAt/tGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249019	55249020	+	protein_altering_variant	In_Frame_Ins	INS	-	-	CTAACCCCT			P-0041893-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			808	338	598	0	ENST00000275493.2:c.2317_2318insCTAACCCCT	p.His773delinsProAsnProTyr	p.H773delinsPNPY	ENST00000275493	NM_005228.3	773	cac/cCTAACCCCTac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0041909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	74	433	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259206	36259206	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	119	526	0	ENST00000300305.3:c.285del	p.Asn96ThrfsTer26	p.N96Tfs*26	ENST00000300305		95	ccC/cc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206818	36206818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	41	610	3	ENST00000300305.3:c.694C>T	p.Arg232Trp	p.R232W	ENST00000300305		232	Cgg/Tgg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937704	36937704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	86	861	0	ENST00000361632.4:c.1034G>A	p.Arg345Lys	p.R345K	ENST00000361632		345	aGg/aAg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959112	2959112	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	126	836	0	ENST00000396946.4:c.2404C>A	p.His802Asn	p.H802N	ENST00000396946	NM_032415.4	802	Cac/Aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0041941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	198	534	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197800	123197800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	101	187	0	ENST00000218089.9:c.1924G>A	p.Glu642Lys	p.E642K	ENST00000218089	NM_001042749.1	642	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259439	55259439	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs397517126		P-0042088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	329	614	0	ENST00000275493.2:c.2497T>G	p.Leu833Val	p.L833V	ENST00000275493	NM_005228.3	833	Ttg/Gtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259446	55259446	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs397517128		P-0042088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	344	664	0	ENST00000275493.2:c.2504A>T	p.His835Leu	p.H835L	ENST00000275493	NM_005228.3	835	cAc/cTc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59821802	59821802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	37	486	1	ENST00000259008.2:c.2248G>A	p.Gly750Arg	p.G750R	ENST00000259008	NM_032043.2	750	Gga/Aga																																																																															
INSR	3643	MSKCC	GRCh37	19	7166351	7166352	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0042088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	64	932	1	ENST00000302850.5:c.1674_1675delinsTT	p.Val559Leu	p.V559L	ENST00000302850	NM_000208.2	558	gtGGta/gtTTta																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561280	9561280	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1197179795		P-0042088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	37	604	0	ENST00000353224.5:c.502C>A	p.Gln168Lys	p.Q168K	ENST00000353224	NM_177990.2	168	Caa/Aaa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23625396	23625396	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	18	405	0	ENST00000261584.4:c.3130C>T	p.Gln1044Ter	p.Q1044*	ENST00000261584	NM_024675.3	1044	Caa/Taa																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313481	30313481	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	38	826	0	ENST00000262643.3:c.1081C>G	p.Gln361Glu	p.Q361E	ENST00000262643	NM_001238.2	361	Cag/Gag																																																																															
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519874		P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	166	404	0	ENST00000356142.4:c.85C>A	p.Pro29Thr	p.P29T	ENST00000356142	NM_018890.3	29	Cct/Act																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468114	50468114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	10	631	0	ENST00000331340.3:c.1349G>A	p.Arg450His	p.R450H	ENST00000331340	NM_006060.4	450	cGc/cAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129833	55129833	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	17	463	0	ENST00000257290.5:c.368-1G>T		p.X123_splice	ENST00000257290	NM_006206.4	123																																																																																
PMAIP1	5366	MSKCC	GRCh37	18	57567440	57567440	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	199	798	0	ENST00000316660.6:c.31C>T	p.Gln11Ter	p.Q11*	ENST00000316660	NM_021127.2	11	Caa/Taa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472652	88472652	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1007258350		P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	61	470	0	ENST00000360948.2:c.1903G>T	p.Asp635Tyr	p.D635Y	ENST00000360948	NM_001012338.2	635	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578395	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGTGGG			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	62	833	0	ENST00000269305.4:c.530_535dup	p.Pro177_His178dup	p.P177_H178dup	ENST00000269305	NM_001126112.2	177	cat/cCCCACCat																																																																															
AXL	558	MSKCC	GRCh37	19	41765793	41765793	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	92	585	1	ENST00000301178.4:c.2669A>G	p.Gln890Arg	p.Q890R	ENST00000301178	NM_021913.4	890	cAg/cGg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385144	41385144	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	46	902	0	ENST00000373198.4:c.817G>T	p.Gly273Cys	p.G273C	ENST00000373198	NM_133170.3	273	Ggt/Tgt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191010	185191010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	48	938	0	ENST00000265026.3:c.1891C>T	p.Leu631Phe	p.L631F	ENST00000265026	NM_004721.4	631	Ctt/Ttt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156610	55156610	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	78	687	0	ENST00000257290.5:c.3011A>T	p.Glu1004Val	p.E1004V	ENST00000257290	NM_006206.4	1004	gAg/gTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155570	56155570	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	55	456	0	ENST00000399503.3:c.662A>G	p.Asp221Gly	p.D221G	ENST00000399503	NM_005921.1	221	gAt/gGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55270231	55270231	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	81	881	0	ENST00000275493.2:c.3184G>C	p.Glu1062Gln	p.E1062Q	ENST00000275493	NM_005228.3	1062	Gaa/Caa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968109	68968109	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	21	579	0	ENST00000288368.4:c.1138G>T	p.Glu380Ter	p.E380*	ENST00000288368	NM_024870.2	380	Gaa/Taa																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127915880	127915880	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	44	596	0	ENST00000373547.4:c.601G>C	p.Asp201His	p.D201H	ENST00000373547	NM_002721.4	201	Gat/Cat																																																																															
ATRX	546	MSKCC	GRCh37	X	76776281	76776281	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	16	368	0	ENST00000373344.5:c.7185G>C	p.Leu2395Phe	p.L2395F	ENST00000373344	NM_000489.3	2395	ttG/ttC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0042133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	147	860	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8436684	8436684	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1294993838		P-0042133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	30	383	0	ENST00000356435.5:c.3994G>T	p.Ala1332Ser	p.A1332S	ENST00000356435		1332	Gct/Tct																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026840	71026840	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	35	306	0	ENST00000318789.4:c.1382A>G	p.Asn461Ser	p.N461S	ENST00000318789	NM_032682.5	461	aAc/aGc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465471	99465471	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	60	599	0	ENST00000268035.6:c.2296A>C	p.Thr766Pro	p.T766P	ENST00000268035	NM_000875.3	766	Acc/Ccc																																																																															
RB1	5925	MSKCC	GRCh37	13	49030374	49030374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	26	373	0	ENST00000267163.4:c.1849G>A	p.Gly617Ser	p.G617S	ENST00000267163	NM_000321.2	617	Ggt/Agt																																																																															
CD276	80381	MSKCC	GRCh37	15	73994839	73994839	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	20	243	0	ENST00000318443.5:c.323G>T	p.Arg108Met	p.R108M	ENST00000318443	NM_001024736.1	108	aGg/aTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943727	9943727	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	66	852	0	ENST00000330684.3:c.1214A>G	p.His405Arg	p.H405R	ENST00000330684	NM_001134407.1	405	cAt/cGt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86674311	86674324	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGACTCTATTTT	AAAGACTCTATTTT	-			P-0042133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	37	333	0	ENST00000274376.6:c.2448_2461del	p.Ser817AsnfsTer8	p.S817Nfs*8	ENST00000274376	NM_002890.2	815	AAAGACTCTATTTTa/a																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0042154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	88	602	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031979	10031979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	199	867	0	ENST00000330684.3:c.844G>T	p.Asp282Tyr	p.D282Y	ENST00000330684	NM_001134407.1	282	Gat/Tat																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2223304	2223304	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	225	852	3	ENST00000398665.3:c.3415G>T	p.Glu1139Ter	p.E1139*	ENST00000398665	NM_032482.2	1139	Gag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097631	8097631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	16	241	0	ENST00000346208.3:c.13G>T	p.Ala5Ser	p.A5S	ENST00000346208		5	Gcg/Tcg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763221	59763221	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	41	750	0	ENST00000259008.2:c.2881A>T	p.Ser961Cys	p.S961C	ENST00000259008	NM_032043.2	961	Agc/Tgc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180052875	180052875	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	114	816	0	ENST00000261937.6:c.1415G>T	p.Arg472Leu	p.R472L	ENST00000261937	NM_182925.4	472	cGt/cTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460502	8460502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	58	793	0	ENST00000356435.5:c.3784G>A	p.Asp1262Asn	p.D1262N	ENST00000356435		1262	Gat/Aat																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390965	139390965	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	162	1001	0	ENST00000277541.6:c.7226A>G	p.Gln2409Arg	p.Q2409R	ENST00000277541	NM_017617.3	2409	cAg/cGg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410306	63410306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	113	910	1	ENST00000330258.3:c.2861G>T	p.Gly954Val	p.G954V	ENST00000330258	NM_152424.3	954	gGg/gTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341907	8341909	+	frameshift_variant	Frame_Shift_Ins	INS	GTT	GTT	ATTT			P-0042154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	54	558	0	ENST00000356435.5:c.4733delinsAT	p.Thr1578AsnfsTer30	p.T1578Nfs*30	ENST00000356435		1577	aaAACt/aaAAATt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0042326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	122	337	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0042326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	270	547	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138528	2138528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	203	700	1	ENST00000219476.3:c.5341C>T	p.Pro1781Ser	p.P1781S	ENST00000219476	NM_000548.3	1781	Cca/Tca																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11924255	11924255	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	24	46	1	ENST00000353533.5:c.52A>T	p.Ser18Cys	p.S18C	ENST00000353533	NM_003010.3	18	Agc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604733	48604736	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0042326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	197	365	0	ENST00000342988.3:c.1558_1561del	p.Glu520HisfsTer16	p.E520Hfs*16	ENST00000342988	NM_005359.5	519	AAAGaa/aa																																																																															
PMS1	5378	MSKCC	GRCh37	2	190732611	190732611	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	108	348	0	ENST00000441310.2:c.2429A>T	p.Asp810Val	p.D810V	ENST00000441310	NM_000534.4	810	gAt/gTt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520135	9520135	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	96	349	1	ENST00000353224.5:c.2134del	p.Leu712SerfsTer2	p.L712Sfs*2	ENST00000353224	NM_177990.2	712	Ctc/tc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023163	31023163	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	198	540	0	ENST00000375687.4:c.2648A>G	p.Glu883Gly	p.E883G	ENST00000375687	NM_015338.5	883	gAa/gGa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005378	150005378	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	246	519	0	ENST00000253339.5:c.847T>C	p.Tyr283His	p.Y283H	ENST00000253339		283	Tac/Cac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	72	349	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665024	138665024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	84	109	0	ENST00000330315.3:c.541G>T	p.Ala181Ser	p.A181S	ENST00000330315	NM_023067.3	181	Gcc/Tcc																																																																															
YAP1	10413	MSKCC	GRCh37	11	102100435	102100435	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	92	312	0	ENST00000282441.5:c.1279G>A	p.Asp427Asn	p.D427N	ENST00000282441	NM_001130145.2	427	Gat/Aat																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935294	36935294	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	253	692	0	ENST00000361632.4:c.1433G>T	p.Arg478Met	p.R478M	ENST00000361632		478	aGg/aTg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983123	201983123	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	300	579	0	ENST00000359651.3:c.972G>T	p.Met324Ile	p.M324I	ENST00000359651		324	atG/atT																																																																															
YAP1	10413	MSKCC	GRCh37	11	102100535	102100535	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	146	421	0	ENST00000282441.5:c.1379G>T	p.Gly460Val	p.G460V	ENST00000282441	NM_001130145.2	460	gGa/gTa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	475158	475158	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	73	513	0	ENST00000399788.2:c.479C>G	p.Ser160Ter	p.S160*	ENST00000399788	NM_001042603.1	160	tCa/tGa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244406	46244406	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	157	395	0	ENST00000334344.6:c.2500C>G	p.Gln834Glu	p.Q834E	ENST00000334344	NM_152641.2	834	Caa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577093	7577113	+	inframe_deletion	In_Frame_Del	DEL	CGGTCTCTCCCAGGACAGGCA	CGGTCTCTCCCAGGACAGGCA	-			P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	442	600	0	ENST00000269305.4:c.825_845del	p.Cys275_Arg282delinsTrp	p.C275_R282delinsW	ENST00000269305	NM_001126112.2	275	tgTGCCTGTCCTGGGAGAGACCGg/tgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602620	10602621	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	197	668	0	ENST00000171111.5:c.957_958insG	p.Arg320AlafsTer30	p.R320Afs*30	ENST00000171111	NM_203500.1	319	-/G																																																																															
AXL	558	MSKCC	GRCh37	19	41726594	41726594	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	241	607	0	ENST00000301178.4:c.139G>T	p.Ala47Ser	p.A47S	ENST00000301178	NM_021913.4	47	Gcc/Tcc																																																																															
APC	324	MSKCC	GRCh37	5	112137040	112137040	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755437577		P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	115	338	0	ENST00000257430.4:c.794G>A	p.Gly265Glu	p.G265E	ENST00000257430	NM_000038.5	265	gGa/gAa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163407	32163407	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs45458498		P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	297	637	0	ENST00000375023.3:c.5819G>T	p.Arg1940Leu	p.R1940L	ENST00000375023	NM_004557.3	1940	cGc/cTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0042417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	302	421	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0042417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	85	418	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032098	26032098	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773862626		P-0042417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	99	386	0	ENST00000244661.2:c.191G>A	p.Arg64Gln	p.R64Q	ENST00000244661	NM_003537.3	64	cGg/cAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711873	89711873	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs587781784		P-0042417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	90	270	0	ENST00000371953.3:c.493-2A>G		p.X165_splice	ENST00000371953	NM_000314.4	165																																																																																
NTRK1	4914	MSKCC	GRCh37	1	156830734	156830734	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	13	73	0	ENST00000524377.1:c.8G>C	p.Arg3Pro	p.R3P	ENST00000524377	NM_002529.3	3	cGa/cCa																																																																															
ATM	472	MSKCC	GRCh37	11	108236197	108236197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	124	462	0	ENST00000278616.4:c.9133C>T	p.Leu3045Phe	p.L3045F	ENST00000278616	NM_000051.3	3045	Ctc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578543	7578546	+	frameshift_variant	Frame_Shift_Del	DEL	GGCA	GGCA	-			P-0042417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	250	730	0	ENST00000269305.4:c.384_387del	p.Ala129SerfsTer40	p.A129Sfs*40	ENST00000269305	NM_001126112.2	128	ccTGCC/cc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271364	18271364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	95	554	0	ENST00000222254.8:c.406G>A	p.Glu136Lys	p.E136K	ENST00000222254	NM_005027.3	136	Gaa/Aaa																																																																															
ATRX	546	MSKCC	GRCh37	X	76940056	76940056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	70	479	0	ENST00000373344.5:c.692G>A	p.Cys231Tyr	p.C231Y	ENST00000373344	NM_000489.3	231	tGt/tAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55220295	55220295	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	1471	911	0	ENST00000275493.2:c.685A>T	p.Ser229Cys	p.S229C	ENST00000275493	NM_005228.3	229	Agt/Tgt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245440	46245440	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	83	484	0	ENST00000334344.6:c.3536del	p.Asn1179IlefsTer9	p.N1179Ifs*9	ENST00000334344	NM_152641.2	1178	ccA/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0042526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	42	388	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577135	7577135	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	93	665	0	ENST00000269305.4:c.803A>T	p.Asn268Ile	p.N268I	ENST00000269305	NM_001126112.2	268	aAc/aTc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492784	56492784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	64	550	0	ENST00000407977.2:c.155C>T	p.Pro52Leu	p.P52L	ENST00000407977		52	cCc/cTc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346338	73346338	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	18	314	0	ENST00000377767.4:c.1462G>T	p.Asp488Tyr	p.D488Y	ENST00000377767	NM_014953.3	488	Gat/Tat																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867412	35867412	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1419637074		P-0042526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	16	321	1	ENST00000303115.3:c.226G>A	p.Ala76Thr	p.A76T	ENST00000303115	NM_002185.3	76	Gcc/Acc																																																																															
MAX	4149	MSKCC	GRCh37	14	65543330	65543330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	89	602	0	ENST00000358664.4:c.347C>T	p.Pro116Leu	p.P116L	ENST00000358664	NM_002382.4	116	cCc/cTc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44919321	44919321	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	45	458	0	ENST00000377967.4:c.1249C>G	p.Pro417Ala	p.P417A	ENST00000377967	NM_021140.2	417	Cct/Gct																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782334	9782334	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	110	739	0	ENST00000377346.4:c.2267T>A	p.Met756Lys	p.M756K	ENST00000377346	NM_005026.3	756	aTg/aAg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11317082	11317082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	82	617	1	ENST00000361445.4:c.412G>A	p.Asp138Asn	p.D138N	ENST00000361445	NM_004958.3	138	Gac/Aac																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426785	121426785	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	122	644	0	ENST00000257555.6:c.476G>T	p.Arg159Leu	p.R159L	ENST00000257555		159	cGg/cTg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246830	41246830	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs886040313		P-0042526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	38	324	0	ENST00000357654.3:c.718C>T	p.Gln240Ter	p.Q240*	ENST00000357654	NM_007294.3	240	Caa/Taa																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56801411	56801411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	28	471	0	ENST00000337432.4:c.915G>A	p.Trp305Ter	p.W305*	ENST00000337432	NM_058216.2	305	tgG/tgA																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120019	70120019	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	10	65	0	ENST00000245479.2:c.1021G>T	p.Ala341Ser	p.A341S	ENST00000245479	NM_000346.3	341	Gcg/Tcg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2220170	2220170	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	124	795	0	ENST00000398665.3:c.2755G>T	p.Gly919Cys	p.G919C	ENST00000398665	NM_032482.2	919	Ggt/Tgt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538332	9538332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	22	456	0	ENST00000353224.5:c.1666C>A	p.Leu556Ile	p.L556I	ENST00000353224	NM_177990.2	556	Ctc/Atc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419849	41419849	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	54	444	0	ENST00000373198.4:c.472C>A	p.Pro158Thr	p.P158T	ENST00000373198	NM_133170.3	158	Cca/Aca																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045999	26045999	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1277418855		P-0042526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	60	369	0	ENST00000540144.1:c.361A>T	p.Met121Leu	p.M121L	ENST00000540144	NM_003531.2	121	Atg/Ttg																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29195803	29195803	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	53	708	0	ENST00000240100.2:c.795C>A	p.Tyr265Ter	p.Y265*	ENST00000240100	NM_001394.6	265	taC/taA																																																																															
MED12	9968	MSKCC	GRCh37	X	70356822	70356822	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751294090		P-0042526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	136	752	0	ENST00000374080.3:c.5494C>T	p.Leu1832Phe	p.L1832F	ENST00000374080		1832	Ctt/Ttt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123211877	123211877	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	22	435	0	ENST00000218089.9:c.2744G>T	p.Cys915Phe	p.C915F	ENST00000218089	NM_001042749.1	915	tGt/tTt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0042533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	75	698	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141528	11141528	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	44	722	0	ENST00000344626.4:c.3505G>T	p.Asp1169Tyr	p.D1169Y	ENST00000344626	NM_003072.3	1169	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578386	7578386	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	199	591	0	ENST00000269305.4:c.544del	p.Cys182AlafsTer65	p.C182Afs*65	ENST00000269305	NM_001126112.2	182	Tgc/gc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177010	56177013	+	frameshift_variant	Frame_Shift_Del	DEL	TATA	TATA	-			P-0042590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	43	308	0	ENST00000399503.3:c.2280_2283del	p.Arg763CysfsTer35	p.R763Cfs*35	ENST00000399503	NM_005921.1	760	ctTATA/ct																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827946	40827946	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	33	707	0	ENST00000373198.4:c.2482A>G	p.Thr828Ala	p.T828A	ENST00000373198	NM_133170.3	828	Acc/Gcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	79	478	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472554	88472554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	121	653	0	ENST00000360948.2:c.2001G>T	p.Met667Ile	p.M667I	ENST00000360948	NM_001012338.2	667	atG/atT																																																																															
STK11	6794	MSKCC	GRCh37	19	1220640	1220640	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131690940		P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	218	738	0	ENST00000326873.7:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000326873	NM_000455.4	220	Cag/Tag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11269480	11269480	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	47	592	0	ENST00000361445.4:c.3690G>T	p.Leu1230Phe	p.L1230F	ENST00000361445	NM_004958.3	1230	ttG/ttT																																																																															
ATM	472	MSKCC	GRCh37	11	108138042	108138042	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	136	508	0	ENST00000278616.4:c.2611G>T	p.Glu871Ter	p.E871*	ENST00000278616	NM_000051.3	871	Gaa/Taa																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154395	2154395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	72	981	0	ENST00000434045.2:c.533C>T	p.Ser178Phe	p.S178F	ENST00000434045	NM_001127598.1	178	tCc/tTc																																																																															
WT1	7490	MSKCC	GRCh37	11	32413581	32413581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	92	487	0	ENST00000332351.3:c.1369C>A	p.Gln457Lys	p.Q457K	ENST00000332351	NM_024426.4	457	Cag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108236234	108236234	+	stop_lost	Nonstop_Mutation	SNP	G	G	T			P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	59	548	0	ENST00000278616.4:c.9170G>T	p.Ter3057LeuextTer29	p.*3057Lext*29	ENST00000278616	NM_000051.3	3057	tGa/tTa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687337	37687337	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778522020		P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	56	605	0	ENST00000447079.4:c.4241C>T	p.Pro1414Leu	p.P1414L	ENST00000447079	NM_015083.1	1414	cCg/cTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17954223	17954223	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	137	804	2	ENST00000458235.1:c.386T>C	p.Leu129Pro	p.L129P	ENST00000458235	NM_000215.3	129	cTt/cCt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505581	25505581	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	82	841	0	ENST00000264709.3:c.178-1G>C		p.X60_splice	ENST00000264709	NM_175629.2	60																																																																																
INPP4B	8821	MSKCC	GRCh37	4	142949975	142949975	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	97	585	0	ENST00000262992.4:c.2735A>T	p.Tyr912Phe	p.Y912F	ENST00000262992	NM_001101669.1	912	tAc/tTc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143045913	143045913	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	80	405	0	ENST00000262992.4:c.1721A>T	p.Glu574Val	p.E574V	ENST00000262992	NM_001101669.1	574	gAg/gTg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635120	87635120	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	39	332	0	ENST00000277120.3:c.2173-1G>T		p.X725_splice	ENST00000277120		725																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0042712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	31	777	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0042804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	13	203	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0042804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	22	591	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0042804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	65	344	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7579327	7579327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	133	616	0	ENST00000269305.4:c.360G>T	p.Lys120Asn	p.K120N	ENST00000269305	NM_001126112.2	120	aaG/aaT																																																																															
RB1	5925	MSKCC	GRCh37	13	49030378	49030378	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0042804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	22	248	0	ENST00000267163.4:c.1853C>G	p.Ser618Ter	p.S618*	ENST00000267163	NM_000321.2	618	tCa/tGa																																																																															
AR	367	MSKCC	GRCh37	X	66943643	66943643	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691681		P-0042804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	97	528	0	ENST00000374690.3:c.2723T>A	p.Leu908His	p.L908H	ENST00000374690	NM_000044.3	908	cTt/cAt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0042809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	263	739	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874937	151874937	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	90	382	0	ENST00000262189.6:c.7601del	p.Pro2534GlnfsTer28	p.P2534Qfs*28	ENST00000262189	NM_170606.2	2534	cCa/ca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0042812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	59	419	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs786203436		P-0042812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	352	943	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0042996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	42	402	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117365	115117365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	40	385	0	ENST00000257566.3:c.809C>A	p.Thr270Lys	p.T270K	ENST00000257566	NM_016569.3	270	aCa/aAa																																																																															
POLE	5426	MSKCC	GRCh37	12	133250256	133250256	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745356467		P-0042996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	58	611	1	ENST00000320574.5:c.1264C>T	p.His422Tyr	p.H422Y	ENST00000320574	NM_006231.2	422	Cat/Tat																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110043	115110043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	98	657	1	ENST00000257566.3:c.1835C>T	p.Ala612Val	p.A612V	ENST00000257566	NM_016569.3	612	gCg/gTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29554598	29554598	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	19	309	0	ENST00000358273.4:c.2383C>G	p.Pro795Ala	p.P795A	ENST00000358273	NM_001042492.2	795	Cca/Gca																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430928	181430928	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1233857840		P-0042996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	76	675	1	ENST00000325404.1:c.780C>A	p.His260Gln	p.H260Q	ENST00000325404	NM_003106.3	260	caC/caA																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393412	139393412	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs780257585		P-0042996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	147	752	1	ENST00000277541.6:c.6119A>G	p.Asn2040Ser	p.N2040S	ENST00000277541	NM_017617.3	2040	aAt/aGt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045190	47045190	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0042996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	71	579	0	ENST00000329236.7:c.2196+1G>C		p.X732_splice	ENST00000329236	NM_001204466.1	732																																																																																
WT1	7490	MSKCC	GRCh37	11	32456764	32456764	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	43	581	0	ENST00000332351.3:c.128T>A	p.Leu43Ter	p.L43*	ENST00000332351	NM_024426.4	43	tTa/tAa																																																																															
CCND1	595	MSKCC	GRCh37	11	69457998	69457998	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866931401		P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	152	393	1	ENST00000227507.2:c.398G>A	p.Arg133Gln	p.R133Q	ENST00000227507	NM_053056.2	133	cGg/cAg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953270	81953270	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	82	297	0	ENST00000359376.3:c.2235+1G>T		p.X745_splice	ENST00000359376	NM_002661.3	745																																																																																
TP53	7157	MSKCC	GRCh37	17	7573986	7573986	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	392	830	0	ENST00000269305.4:c.1041del	p.Leu348TrpfsTer22	p.L348Wfs*22	ENST00000269305	NM_001126112.2	347	gcC/gc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220717	1220717	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs587782018		P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	266	659	0	ENST00000326873.7:c.734+1G>T		p.X245_splice	ENST00000326873	NM_000455.4	245																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602911	10602911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	40	922	1	ENST00000171111.5:c.667C>A	p.Leu223Met	p.L223M	ENST00000171111	NM_203500.1	223	Ctg/Atg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610630	10610630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	279	714	0	ENST00000171111.5:c.80C>T	p.Ala27Val	p.A27V	ENST00000171111	NM_203500.1	27	gCa/gTa																																																																															
CUL3	8452	MSKCC	GRCh37	2	225362513	225362513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	192	449	0	ENST00000264414.4:c.1664G>A	p.Gly555Asp	p.G555D	ENST00000264414	NM_003590.4	555	gGt/gAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827960	40827960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	305	530	0	ENST00000373198.4:c.2468C>A	p.Ala823Asp	p.A823D	ENST00000373198	NM_133170.3	823	gCc/gAc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49939821	49939821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	247	826	1	ENST00000296474.3:c.1222C>T	p.Pro408Ser	p.P408S	ENST00000296474	NM_002447.2	408	Ccc/Tcc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49939833	49939833	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	262	849	0	ENST00000296474.3:c.1210C>G	p.Pro404Ala	p.P404A	ENST00000296474	NM_002447.2	404	Ccc/Gcc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755583	57755583	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs372211010		P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	53	634	0	ENST00000274289.3:c.204G>T	p.Glu68Asp	p.E68D	ENST00000274289	NM_006622.3	68	gaG/gaT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956607	93956607	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	101	389	0	ENST00000369303.4:c.2629C>A	p.Arg877Ser	p.R877S	ENST00000369303	NM_004440.3	877	Cgt/Agt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117704571	117704571	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	119	438	0	ENST00000368508.3:c.2405A>T	p.Tyr802Phe	p.Y802F	ENST00000368508	NM_002944.2	802	tAc/tTc																																																																															
HGF	3082	MSKCC	GRCh37	7	81392072	81392072	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	112	316	0	ENST00000222390.5:c.205C>A	p.Gln69Lys	p.Q69K	ENST00000222390	NM_000601.4	69	Caa/Aaa																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913351		P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	322	445	0	ENST00000288602.6:c.1397G>C	p.Gly466Ala	p.G466A	ENST00000288602	NM_004333.4	466	gGa/gCa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151902253	151902253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	97	373	0	ENST00000262189.6:c.3899G>A	p.Arg1300Lys	p.R1300K	ENST00000262189	NM_170606.2	1300	aGa/aAa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133867	38133867	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	1239	912	0	ENST00000317025.8:c.4019A>G	p.Asp1340Gly	p.D1340G	ENST00000317025	NM_023034.1	1340	gAc/gGc																																																																															
NBN	4683	MSKCC	GRCh37	8	90993102	90993103	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	249	289	1	ENST00000265433.3:c.339_340delinsTT	p.Leu113_Val114delinsPhePhe	p.L113_V114delinsFF	ENST00000265433	NM_002485.4	113	ttGGtt/ttTTtt																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128347870	128347870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	211	700	0	ENST00000265960.3:c.635G>T	p.Trp212Leu	p.W212L	ENST00000265960	NM_001006617.1	212	tGg/tTg																																																																															
AR	367	MSKCC	GRCh37	X	66941720	66941720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	121	626	1	ENST00000374690.3:c.2364G>A	p.Met788Ile	p.M788I	ENST00000374690	NM_000044.3	788	atG/atA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0043089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	71	411	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627860	14627860	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0043089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	82	681	0	ENST00000254322.2:c.212-2A>G		p.X71_splice	ENST00000254322	NM_006145.1	71																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31449522	31449522	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	35	181	1	ENST00000344624.3:c.2687C>G	p.Ala896Gly	p.A896G	ENST00000344624		896	gCc/gGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	89	416	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RAD52	5893	MSKCC	GRCh37	12	1040408	1040408	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370272002		P-0043151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	51	616	0	ENST00000358495.3:c.164G>A	p.Arg55His	p.R55H	ENST00000358495	NM_134424.2	55	cGc/cAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597401	10597401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	165	893	0	ENST00000171111.5:c.1802G>T	p.Arg601Leu	p.R601L	ENST00000171111	NM_203500.1	601	cGg/cTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504371	8504371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	136	540	0	ENST00000356435.5:c.1712G>T	p.Arg571Met	p.R571M	ENST00000356435		571	aGg/aTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69030817	69030817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	96	409	0	ENST00000288368.4:c.3359C>T	p.Ser1120Phe	p.S1120F	ENST00000288368	NM_024870.2	1120	tCc/tTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532780	187532780	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1200316021		P-0043151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	103	561	0	ENST00000441802.2:c.9613G>T	p.Gly3205Cys	p.G3205C	ENST00000441802	NM_005245.3	3205	Ggc/Tgc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459655	149459655	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	158	715	0	ENST00000286301.3:c.552del	p.Lys185ArgfsTer2	p.K185Rfs*2	ENST00000286301	NM_005211.3	184	agG/ag																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371843	55371843	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	32	177	0	ENST00000297316.4:c.533G>T	p.Gly178Val	p.G178V	ENST00000297316	NM_022454.3	178	gGc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	143	386	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0043176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	51	560	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
PGR	5241	MSKCC	GRCh37	11	100998684	100998684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	97	870	0	ENST00000325455.5:c.1118C>T	p.Ala373Val	p.A373V	ENST00000325455	NM_001202474.3	373	gCg/gTg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143094798	143094798	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	31	309	0	ENST00000262992.4:c.1346T>C	p.Met449Thr	p.M449T	ENST00000262992	NM_001101669.1	449	aTg/aCg																																																																															
ATM	472	MSKCC	GRCh37	11	108175445	108175445	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	140	276	0	ENST00000278616.4:c.5540A>G	p.His1847Arg	p.H1847R	ENST00000278616	NM_000051.3	1847	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	143	347	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120811	115120811	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	148	600	0	ENST00000257566.3:c.195G>C	p.Met65Ile	p.M65I	ENST00000257566	NM_016569.3	65	atG/atC																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436071	110436071	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	155	806	0	ENST00000375856.3:c.2330C>G	p.Thr777Arg	p.T777R	ENST00000375856	NM_003749.2	777	aCg/aGg																																																																															
MGA	23269	MSKCC	GRCh37	15	41961656	41961657	+	stop_gained	Nonsense_Mutation	DNP	AG	AG	TT			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	112	435	0	ENST00000219905.7:c.564_565delinsTT	p.Gln188_Glu189delinsHisTer	p.Q188_E189delinsH*	ENST00000219905	NM_001164273.1	188	caAGaa/caTTaa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645244	67645244	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	77	635	0	ENST00000264010.4:c.509G>T	p.Gly170Val	p.G170V	ENST00000264010	NM_006565.3	170	gGg/gTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991853	72991853	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	87	627	0	ENST00000268489.5:c.2192G>C	p.Cys731Ser	p.C731S	ENST00000268489	NM_006885.3	731	tGt/tCt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45371799	45371799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	172	341	0	ENST00000262160.6:c.1192G>T	p.Val398Phe	p.V398F	ENST00000262160	NM_005901.5	398	Gtt/Ttt																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19258541	19258541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	241	855	0	ENST00000162023.5:c.359G>T	p.Gly120Val	p.G120V	ENST00000162023		120	gGg/gTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306604	41306604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	187	656	0	ENST00000373198.4:c.1055C>T	p.Pro352Leu	p.P352L	ENST00000373198	NM_133170.3	352	cCc/cTc																																																																															
NF2	4771	MSKCC	GRCh37	22	30032755	30032755	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	53	343	0	ENST00000338641.4:c.131del	p.Lys44ArgfsTer79	p.K44Rfs*79	ENST00000338641	NM_000268.3	44	Aag/ag																																																																															
MYD88	4615	MSKCC	GRCh37	3	38180367	38180367	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	339	827	0	ENST00000396334.3:c.215T>A	p.Leu72Ter	p.L72*	ENST00000396334	NM_002468.4	72	tTg/tAg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436398	52436399	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	138	679	3	ENST00000460680.1:c.2095_2096delinsTT	p.Arg699Leu	p.R699L	ENST00000460680	NM_004656.3	699	CGg/TTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851688	134851688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	178	502	0	ENST00000398015.3:c.1094C>A	p.Ala365Glu	p.A365E	ENST00000398015	NM_004441.4	365	gCa/gAa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217129	66217129	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	120	405	0	ENST00000273854.3:c.2486C>A	p.Pro829His	p.P829H	ENST00000273854	NM_004439.5	829	cCc/cAc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143114239	143114239	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	28	237	0	ENST00000262992.4:c.1181+1G>T		p.X394_splice	ENST00000262992	NM_001101669.1	394																																																																																
SDHA	6389	MSKCC	GRCh37	5	226022	226022	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	45	109	0	ENST00000264932.6:c.481A>T	p.Ser161Cys	p.S161C	ENST00000264932	NM_004168.2	161	Agc/Tgc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522688	176522688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	84	876	0	ENST00000292408.4:c.1785G>T	p.Gln595His	p.Q595H	ENST00000292408	NM_213647.1	595	caG/caT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066653	94066653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	132	454	0	ENST00000369303.4:c.1106G>T	p.Cys369Phe	p.C369F	ENST00000369303	NM_004440.3	369	tGt/tTt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157510782	157510782	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1321954955		P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	69	488	0	ENST00000346085.5:c.3557C>T	p.Ser1186Leu	p.S1186L	ENST00000346085	NM_020732.3	1186	tCg/tTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2979385	2979385	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	316	435	0	ENST00000396946.4:c.862C>T	p.Gln288Ter	p.Q288*	ENST00000396946	NM_032415.4	288	Cag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81386550	81386550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	98	435	1	ENST00000222390.5:c.437G>T	p.Gly146Val	p.G146V	ENST00000222390	NM_000601.4	146	gGc/gTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485951	8485952	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	95	410	0	ENST00000356435.5:c.2865_2866delinsAT	p.Leu956Phe	p.L956F	ENST00000356435		955	acCCtt/acATtt																																																																															
ATRX	546	MSKCC	GRCh37	X	76937185	76937185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	125	241	0	ENST00000373344.5:c.3563C>T	p.Ser1188Phe	p.S1188F	ENST00000373344	NM_000489.3	1188	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0043234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	117	720	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0043234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	27	320	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0043234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	17	338	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149495360	149495360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs114435947		P-0043234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	164	805	0	ENST00000261799.4:c.3287C>T	p.Ala1096Val	p.A1096V	ENST00000261799	NM_002609.3	1096	gCg/gTg																																																																															
FYN	2534	MSKCC	GRCh37	6	112024169	112024169	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1465963577		P-0043234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	18	478	0	ENST00000368678.4:c.616C>T	p.Arg206Cys	p.R206C	ENST00000368678		206	Cgc/Tgc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3799642	3799652	+	frameshift_variant	Frame_Shift_Del	DEL	GGTATCATTTT	GGTATCATTTT	-			P-0043234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	14	357	0	ENST00000262367.5:c.3812_3822del	p.Lys1271IlefsTer8	p.K1271Ifs*8	ENST00000262367	NM_004380.2	1271	aAAAATGATACC/a																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575168	48575168	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0043234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	23	302	0	ENST00000342988.3:c.362T>A	p.Leu121Ter	p.L121*	ENST00000342988	NM_005359.5	121	tTa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112175771	112175775	+	frameshift_variant	Frame_Shift_Ins	INS	GAAAG	GAAAG	AAAAGT			P-0043234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	26	331	0	ENST00000257430.4:c.4480_4484delinsAAAAGT	p.Glu1494LysfsTer20	p.E1494Kfs*20	ENST00000257430	NM_000038.5	1494	GAAAGt/AAAAGTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0043243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	129	440	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0043243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	38	303	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0043243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	183	683	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952076	178952076	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	44	366	0	ENST00000263967.3:c.3131A>T	p.Asn1044Ile	p.N1044I	ENST00000263967	NM_006218.2	1044	aAt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578410	7578410	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	24	768	0	ENST00000269305.4:c.520A>T	p.Arg174Trp	p.R174W	ENST00000269305	NM_001126112.2	174	Agg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	357	426	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221989	1221989	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1085307466		P-0043344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	293	716	0	ENST00000326873.7:c.904C>T	p.Gln302Ter	p.Q302*	ENST00000326873	NM_000455.4	302	Cag/Tag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2185872	2185872	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	380	743	1	ENST00000398665.3:c.146del	p.Pro49ArgfsTer12	p.P49Rfs*12	ENST00000398665	NM_032482.2	48	atC/at																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602438	10602438	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	318	723	0	ENST00000171111.5:c.1140G>T	p.Arg380Ser	p.R380S	ENST00000171111	NM_203500.1	380	agG/agT																																																																															
IRF4	3662	MSKCC	GRCh37	6	401424	401424	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0043363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	38	224	0	ENST00000380956.4:c.746A>G	p.Asp249Gly	p.D249G	ENST00000380956	NM_001195286.1	249	gAc/gGc																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51436047	51436047	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	55	359	0	ENST00000262662.1:c.7G>T	p.Glu3Ter	p.E3*	ENST00000262662		3	Gag/Tag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99472841	99472841	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	80	539	0	ENST00000268035.6:c.2837T>G	p.Leu946Trp	p.L946W	ENST00000268035	NM_000875.3	946	tTg/tGg																																																																															
MET	4233	MSKCC	GRCh37	7	116411902	116411902	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0043562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	219	733	0	ENST00000397752.3:c.2888-1G>C		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0043590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	297	505	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519985		P-0043590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	203	883	0	ENST00000269305.4:c.857A>G	p.Glu286Gly	p.E286G	ENST00000269305	NM_001126112.2	286	gAa/gGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0043656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	258	773	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242480	55242503	+	inframe_deletion	In_Frame_Del	DEL	AACATCTCCGAAAGCCAACAAGGA	AACATCTCCGAAAGCCAACAAGGA	-			P-0043656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	820	375	0	ENST00000275493.2:c.2252_2275del	p.Thr751_Glu758del	p.T751_E758del	ENST00000275493	NM_005228.3	750	gcAACATCTCCGAAAGCCAACAAGGAa/gca																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040940	47040941	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0043656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	233	923	0	ENST00000329236.7:c.1239_1240del	p.Ser414AspfsTer25	p.S414Dfs*25	ENST00000329236	NM_001204466.1	412	tcTGtg/tctg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421849	49421849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	125	783	1	ENST00000301067.7:c.14458C>T	p.Pro4820Ser	p.P4820S	ENST00000301067	NM_003482.3	4820	Cca/Tca																																																																															
RB1	5925	MSKCC	GRCh37	13	48951082	48951082	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	134	197	0	ENST00000267163.4:c.1244T>G	p.Ile415Arg	p.I415R	ENST00000267163	NM_000321.2	415	aTa/aGa																																																																															
MGA	23269	MSKCC	GRCh37	15	42058658	42058658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	68	218	0	ENST00000219905.7:c.8378G>A	p.Arg2793Lys	p.R2793K	ENST00000219905	NM_001164273.1	2793	aGg/aAg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545585	106545585	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376453517		P-0043692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	51	296	0	ENST00000359195.3:c.3062G>A	p.Arg1021His	p.R1021H	ENST00000359195	NM_002649.2	1021	cGt/cAt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0043692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	124	450	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
PAK1	5058	MSKCC	GRCh37	11	77103515	77103515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	42	266	0	ENST00000356341.3:c.51G>A	p.Met17Ile	p.M17I	ENST00000356341	NM_002576.4	17	atG/atA																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0043692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	181	383	0				ENST00000310581	NM_198253.2																																																																																	
MGA	23269	MSKCC	GRCh37	15	41989078	41989078	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	75	437	0	ENST00000219905.7:c.1870A>C	p.Lys624Gln	p.K624Q	ENST00000219905	NM_001164273.1	624	Aag/Cag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923728	72923728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	104	594	0	ENST00000268489.5:c.3350G>A	p.Ser1117Asn	p.S1117N	ENST00000268489	NM_006885.3	1117	aGc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7572973	7572973	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	69	410	0	ENST00000269305.4:c.1136del	p.Arg379ProfsTer43	p.R379Pfs*43	ENST00000269305	NM_001126112.2	379	cGc/cc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374920	45374920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	59	391	0	ENST00000262160.6:c.923C>T	p.Ser308Leu	p.S308L	ENST00000262160	NM_005901.5	308	tCa/tTa																																																																															
CDK6	1021	MSKCC	GRCh37	7	92355047	92355047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	31	246	0	ENST00000265734.4:c.430C>T	p.Arg144Cys	p.R144C	ENST00000265734	NM_001259.6	144	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	135	779	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs483352822		P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	49	450	0	ENST00000368323.3:c.270G>A	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atA																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247530	71247530	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	41	279	0	ENST00000318789.4:c.3G>A	p.Met1?	p.M1?	ENST00000318789	NM_032682.5	1	atG/atA																																																																															
FANCC	2176	MSKCC	GRCh37	9	97876938	97876938	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	48	418	0	ENST00000289081.3:c.1127G>C	p.Arg376Thr	p.R376T	ENST00000289081	NM_000136.2	376	aGa/aCa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105869	27105878	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCAGATAA	GCTCAGATAA	-			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	68	468	0	ENST00000324856.7:c.5483_5492del	p.Ser1828LeufsTer52	p.S1828Lfs*52	ENST00000324856	NM_006015.4	1827	tGCTCAGATAAg/tg																																																																															
RIT1	6016	MSKCC	GRCh37	1	155880262	155880262	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1165493340		P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	35	346	0	ENST00000368323.3:c.142G>A	p.Glu48Lys	p.E48K	ENST00000368323	NM_006912.5	48	Gaa/Aaa																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195400	102195400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	36	272	1	ENST00000263464.3:c.160G>T	p.Gly54Cys	p.G54C	ENST00000263464	NM_001165.4	54	Ggt/Tgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133212542	133212542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	160	451	0	ENST00000320574.5:c.5747G>T	p.Trp1916Leu	p.W1916L	ENST00000320574	NM_006231.2	1916	tGg/tTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95583034	95583034	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	16	162	0	ENST00000343455.3:c.1510-2A>T		p.X504_splice	ENST00000343455	NM_177438.2	504																																																																																
CYLD	1540	MSKCC	GRCh37	16	50811766	50811766	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	21	279	0	ENST00000398568.2:c.1043G>C	p.Arg348Thr	p.R348T	ENST00000398568	NM_001042412.1	348	aGa/aCa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10251533	10251533	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	136	629	0	ENST00000340748.4:c.3399G>T	p.Glu1133Asp	p.E1133D	ENST00000340748		1133	gaG/gaT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105546	11105546	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	116	553	0	ENST00000344626.4:c.1462G>T	p.Glu488Ter	p.E488*	ENST00000344626	NM_003072.3	488	Gaa/Taa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31379511	31379512	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GG	GG	AA			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	43	367	1	ENST00000328111.2:c.918_919delinsAA	p.Glu307Lys	p.E307K	ENST00000328111	NM_006892.3	306	ctGGag/ctAAag																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72881617	72881617	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	53	329	0	ENST00000325599.8:c.502G>T	p.Val168Phe	p.V168F	ENST00000325599	NM_018130.2	168	Gtt/Ttt																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502442	186502442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	23	250	0	ENST00000323963.5:c.165G>T	p.Lys55Asn	p.K55N	ENST00000323963		55	aaG/aaT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974678	21974678	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A	rs587778189		P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	40	445	0	ENST00000304494.5:c.149A>T	p.Gln50Leu	p.Q50L	ENST00000304494	NM_000077.4	50	cAg/cTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931732	39931732	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	198	581	0	ENST00000378444.4:c.2867A>T	p.Lys956Ile	p.K956I	ENST00000378444	NM_001123385.1	956	aAa/aTa																																																																															
MED12	9968	MSKCC	GRCh37	X	70357787	70357788	+	missense_variant	Missense_Mutation	DNP	CT	CT	TC			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	197	657	0	ENST00000374080.3:c.6038_6039delinsTC	p.Thr2013Ile	p.T2013I	ENST00000374080		2013	aCT/aTC																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288887	212288887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	19	193	0	ENST00000342788.4:c.2859G>T	p.Met953Ile	p.M953I	ENST00000342788	NM_005235.2	953	atG/atT																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78433873	78433873	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	38	260	0	ENST00000370768.2:c.226A>G	p.Lys76Glu	p.K76E	ENST00000370768	NM_003902.3	76	Aag/Gag																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838314	156838314	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	137	576	0	ENST00000524377.1:c.592G>T	p.Val198Phe	p.V198F	ENST00000524377	NM_002529.3	198	Gtc/Ttc																																																																															
ATM	472	MSKCC	GRCh37	11	108164127	108164127	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	17	182	0	ENST00000278616.4:c.4699G>C	p.Asp1567His	p.D1567H	ENST00000278616	NM_000051.3	1567	Gac/Cac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	66	364	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434762	110434762	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	83	503	0	ENST00000375856.3:c.3639G>T	p.Leu1213Phe	p.L1213F	ENST00000375856	NM_003749.2	1213	ttG/ttT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs483352695		P-0043815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	83	433	0	ENST00000269305.4:c.736A>T	p.Met246Leu	p.M246L	ENST00000269305	NM_001126112.2	246	Atg/Ttg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488718	212488718	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267599191		P-0043815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	54	418	1	ENST00000342788.4:c.2131C>T	p.Arg711Cys	p.R711C	ENST00000342788	NM_005235.2	711	Cgt/Tgt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523315	9523315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	47	365	0	ENST00000353224.5:c.1922C>A	p.Pro641His	p.P641H	ENST00000353224	NM_177990.2	641	cCc/cAc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0043815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	45	235	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521723	89521723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	54	326	0	ENST00000336596.2:c.2800G>T	p.Gly934Cys	p.G934C	ENST00000336596	NM_005233.5	934	Ggt/Tgt																																																																															
TET2	54790	MSKCC	GRCh37	4	106156981	106156981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	30	334	0	ENST00000380013.4:c.1882G>C	p.Glu628Gln	p.E628Q	ENST00000380013	NM_001127208.2	628	Gag/Cag																																																																															
TET2	54790	MSKCC	GRCh37	4	106164787	106164787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	78	390	1	ENST00000380013.4:c.3655C>T	p.His1219Tyr	p.H1219Y	ENST00000380013	NM_001127208.2	1219	Cac/Tac																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143159054	143159054	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	15	258	0	ENST00000262992.4:c.799G>C	p.Glu267Gln	p.E267Q	ENST00000262992	NM_001101669.1	267	Gaa/Caa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143159059	143159059	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	18	263	0	ENST00000262992.4:c.794C>A	p.Pro265His	p.P265H	ENST00000262992	NM_001101669.1	265	cCt/cAt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143191851	143191851	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	63	365	0	ENST00000262992.4:c.580G>C	p.Ala194Pro	p.A194P	ENST00000262992	NM_001101669.1	194	Gcc/Ccc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32181471	32181471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	90	430	0	ENST00000375023.3:c.2314G>T	p.Val772Leu	p.V772L	ENST00000375023	NM_004557.3	772	Gtg/Ttg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508499	106508499	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752602335		P-0043815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	20	246	0	ENST00000359195.3:c.493G>A	p.Val165Ile	p.V165I	ENST00000359195	NM_002649.2	165	Gtc/Atc																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346014	152346014	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	41	380	0	ENST00000359321.1:c.556G>C	p.Asp186His	p.D186H	ENST00000359321	NM_005431.1	186	Gac/Cac																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346431	152346431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	28	274	1	ENST00000359321.1:c.139C>T	p.His47Tyr	p.H47Y	ENST00000359321	NM_005431.1	47	Cat/Tat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971185	21971185	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs36204273		P-0043815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	34	351	0	ENST00000304494.5:c.173G>A	p.Arg58Gln	p.R58Q	ENST00000304494	NM_000077.4	58	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	1282	353	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	456	715	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105513	27105513	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0043856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	104	357	0	ENST00000324856.7:c.5125-1G>C		p.X1709_splice	ENST00000324856	NM_006015.4	1709																																																																																
SHOC2	8036	MSKCC	GRCh37	10	112745443	112745443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	312	500	0	ENST00000369452.4:c.761C>T	p.Pro254Leu	p.P254L	ENST00000369452	NM_007373.3	254	cCa/cTa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944127	81944127	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs1369745419		P-0043856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	326	470	0	ENST00000359376.3:c.1736G>T	p.Arg579Leu	p.R579L	ENST00000359376	NM_002661.3	579	cGg/cTg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78896557	78896557	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	369	598	0	ENST00000306801.3:c.2554G>T	p.Asp852Tyr	p.D852Y	ENST00000306801	NM_020761.2	852	Gac/Tac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770615	40770615	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	211	406	0	ENST00000373198.4:c.2767T>C	p.Trp923Arg	p.W923R	ENST00000373198	NM_133170.3	923	Tgg/Cgg																																																																															
NF2	4771	MSKCC	GRCh37	22	30038233	30038233	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	320	389	0	ENST00000338641.4:c.406G>T	p.Glu136Ter	p.E136*	ENST00000338641	NM_000268.3	136	Gag/Tag																																																																															
ATR	545	MSKCC	GRCh37	3	142255004	142255005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	60	201	0	ENST00000350721.4:c.3764dup	p.Leu1255PhefsTer3	p.L1255Ffs*3	ENST00000350721	NM_001184.3	1255	tta/ttTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549787	187549787	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	250	378	0	ENST00000441802.2:c.4454A>C	p.Glu1485Ala	p.E1485A	ENST00000441802	NM_005245.3	1485	gAg/gCg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518243	8518243	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	72	312	0	ENST00000356435.5:c.1148T>G	p.Leu383Arg	p.L383R	ENST00000356435		383	cTa/cGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	24	388	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49422708	49422708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	109	636	0	ENST00000301067.7:c.14285G>A	p.Gly4762Asp	p.G4762D	ENST00000301067	NM_003482.3	4762	gGc/gAc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	110	565	0	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597401	10597401	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	159	808	0	ENST00000171111.5:c.1802G>C	p.Arg601Pro	p.R601P	ENST00000171111	NM_203500.1	601	cGg/cCg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11095970	11095970	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0043872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	125	809	0	ENST00000344626.4:c.244A>T	p.Lys82Ter	p.K82*	ENST00000344626	NM_003072.3	82	Aag/Tag																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873020	136873020	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147198552		P-0043872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	30	460	1	ENST00000241393.3:c.478G>A	p.Val160Ile	p.V160I	ENST00000241393	NM_003467.2	160	Gtc/Atc																																																																															
MSH3	4437	MSKCC	GRCh37	5	80169106	80169106	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0043872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	29	325	0	ENST00000265081.6:c.3302G>T	p.Arg1101Ile	p.R1101I	ENST00000265081	NM_002439.4	1101	aGa/aTa																																																																															
ATRX	546	MSKCC	GRCh37	X	76939672	76939672	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	48	628	0	ENST00000373344.5:c.1076T>C	p.Leu359Pro	p.L359P	ENST00000373344	NM_000489.3	359	cTg/cCg																																																																															
XIAP	331	MSKCC	GRCh37	X	123020354	123020354	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	36	375	0	ENST00000355640.3:c.842A>T	p.Lys281Met	p.K281M	ENST00000355640		281	aAg/aTg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123195710	123195710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	46	575	0	ENST00000218089.9:c.1626del	p.Thr543GlnfsTer33	p.T543Qfs*33	ENST00000218089	NM_001042749.1	542	Ggg/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0044005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	334	492	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170136	32170136	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771019003		P-0044005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	112	571	0	ENST00000375023.3:c.3472C>T	p.Arg1158Ter	p.R1158*	ENST00000375023	NM_004557.3	1158	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0044005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	112	253	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597396	10597396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	303	480	0	ENST00000171111.5:c.1807G>T	p.Gly603Trp	p.G603W	ENST00000171111	NM_203500.1	603	Ggg/Tgg																																																																															
TET2	54790	MSKCC	GRCh37	4	106164005	106164005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	25	223	0	ENST00000380013.4:c.3515G>T	p.Gly1172Val	p.G1172V	ENST00000380013	NM_001127208.2	1172	gGt/gTt																																																																															
RET	5979	MSKCC	GRCh37	10	43600572	43600572	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	249	412	0	ENST00000355710.3:c.798C>G	p.Asp266Glu	p.D266E	ENST00000355710	NM_020975.4	266	gaC/gaG																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279540	123279540	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	264	435	0	ENST00000358487.5:c.892G>C	p.Gly298Arg	p.G298R	ENST00000358487	NM_000141.4	298	Ggc/Cgc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136072	64136072	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0044005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	186	417	0	ENST00000334205.4:c.1333A>T	p.Arg445Trp	p.R445W	ENST00000334205	NM_003942.2	445	Agg/Tgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821783	72821783	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	35	289	0	ENST00000268489.5:c.10392G>T	p.Lys3464Asn	p.K3464N	ENST00000268489	NM_006885.3	3464	aaG/aaT																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732352	74732352	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs145534754		P-0044005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	206	259	0	ENST00000359995.5:c.557G>T	p.Arg186Leu	p.R186L	ENST00000359995	NM_001195427.1	186	cGg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213619	36213619	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0044005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	297	554	0	ENST00000222270.7:c.2721G>T	p.Glu907Asp	p.E907D	ENST00000222270	NM_014727.1	907	gaG/gaT																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25459857	25459857	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	178	396	0	ENST00000264709.3:c.2426T>C	p.Val809Ala	p.V809A	ENST00000264709	NM_175629.2	809	gTg/gCg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426799	212426799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	34	260	0	ENST00000342788.4:c.2316G>T	p.Met772Ile	p.M772I	ENST00000342788	NM_005235.2	772	atG/atT																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84393430	84393430	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	25	166	0	ENST00000321945.7:c.227C>G	p.Ser76Cys	p.S76C	ENST00000321945	NM_139076.2	76	tCt/tGt																																																																															
TET2	54790	MSKCC	GRCh37	4	106196553	106196553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	94	265	0	ENST00000380013.4:c.4886C>T	p.Pro1629Leu	p.P1629L	ENST00000380013	NM_001127208.2	1629	cCa/cTa																																																																															
MET	4233	MSKCC	GRCh37	7	116397530	116397530	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	426	289	0	ENST00000397752.3:c.1902C>G	p.Phe634Leu	p.F634L	ENST00000397752	NM_000245.2	634	ttC/ttG																																																																															
SMO	6608	MSKCC	GRCh37	7	128850288	128850290	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0044005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	62	484	0	ENST00000249373.3:c.1552_1554del	p.Glu518del	p.E518del	ENST00000249373	NM_005631.4	517	gtGGAg/gtg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873836	151873836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	155	311	0	ENST00000262189.6:c.8702C>T	p.Pro2901Leu	p.P2901L	ENST00000262189	NM_170606.2	2901	cCt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0044028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	379	655	1	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023909	27023923	+	inframe_deletion	In_Frame_Del	DEL	GCTGCGGCGGCGGCA	GCTGCGGCGGCGGCA	-	rs751352361		P-0044028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	10	73	0	ENST00000324856.7:c.1029_1043del	p.Ala345_Ala349del	p.A345_A349del	ENST00000324856	NM_006015.4	339	GCTGCGGCGGCGGCA/-																																																																															
MTOR	2475	MSKCC	GRCh37	1	11204706	11204706	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0044028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	57	330	0	ENST00000361445.4:c.4871A>C	p.Gln1624Pro	p.Q1624P	ENST00000361445	NM_004958.3	1624	cAg/cCg																																																																															
JUN	3725	MSKCC	GRCh37	1	59248324	59248324	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	61	182	0	ENST00000371222.2:c.419C>G	p.Ala140Gly	p.A140G	ENST00000371222	NM_002228.3	140	gCa/gGa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11129685	11129685	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0044028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	328	553	0	ENST00000344626.4:c.2491A>T	p.Lys831Ter	p.K831*	ENST00000344626	NM_003072.3	831	Aag/Tag																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204732688	204732688	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs138279736		P-0044028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	136	310	0	ENST00000302823.3:c.23G>T	p.Arg8Leu	p.R8L	ENST00000302823	NM_005214.4	8	cGg/cTg																																																																															
RAC2	5880	MSKCC	GRCh37	22	37628905	37628905	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	336	819	0	ENST00000249071.6:c.161G>T	p.Gly54Val	p.G54V	ENST00000249071	NM_002872.4	54	gGg/gTg																																																																															
MITF	4286	MSKCC	GRCh37	3	69928509	69928509	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	274	597	2	ENST00000352241.4:c.329C>A	p.Thr110Lys	p.T110K	ENST00000352241	NM_198159.2	110	aCg/aAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332753	153332753	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	64	439	0	ENST00000281708.4:c.203G>T	p.Gly68Val	p.G68V	ENST00000281708	NM_033632.3	68	gGc/gTc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636760	176636760	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	133	434	0	ENST00000439151.2:c.1360G>T	p.Asp454Tyr	p.D454Y	ENST00000439151	NM_022455.4	454	Gat/Tat																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38189020	38189020	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1297087312		P-0044028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	214	565	0	ENST00000317025.8:c.994G>T	p.Gly332Cys	p.G332C	ENST00000317025	NM_023034.1	332	Ggt/Tgt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	38	363	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6029571	6029571	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200513014		P-0044045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	30	375	0	ENST00000265849.7:c.1004A>G	p.Asn335Ser	p.N335S	ENST00000265849	NM_000535.5	335	aAt/aGt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47059154	47059154	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	54	444	0	ENST00000409792.3:c.7507del	p.Glu2503LysfsTer10	p.E2503Kfs*10	ENST00000409792	NM_014159.6	2503	Gaa/aa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162054	47162055	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0044045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	55	298	0	ENST00000409792.3:c.4070_4071dup	p.Leu1358PhefsTer16	p.L1358Ffs*16	ENST00000409792	NM_014159.6	1357	-/TT																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	503	475	1	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602620	10602620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	927	519	1	ENST00000171111.5:c.958C>T	p.Arg320Trp	p.R320W	ENST00000171111	NM_203500.1	320	Cgg/Tgg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18699288	18699288	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867629250		P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	382	263	0	ENST00000266497.5:c.3389G>A	p.Gly1130Glu	p.G1130E	ENST00000266497		1130	gGa/gAa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971058	21971058	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	285	270	0	ENST00000304494.5:c.300del	p.Ala102ArgfsTer44	p.A102Rfs*44	ENST00000304494	NM_000077.4	100	gcC/gc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965643	93965643	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762713500		P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	286	360	0	ENST00000369303.4:c.2285G>A	p.Arg762His	p.R762H	ENST00000369303	NM_004440.3	762	cGc/cAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29684080	29684080	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587781502		P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	357	401	0	ENST00000358273.4:c.7841A>G	p.Lys2614Arg	p.K2614R	ENST00000358273	NM_001042492.2	2614	aAg/aGg																																																																															
MPL	4352	MSKCC	GRCh37	1	43814980	43814980	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	383	376	0	ENST00000372470.3:c.1515C>A	p.Ser505Arg	p.S505R	ENST00000372470	NM_005373.2	505	agC/agA																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59871025	59871025	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	264	300	0	ENST00000259008.2:c.1406G>C	p.Ser469Thr	p.S469T	ENST00000259008	NM_032043.2	469	aGt/aCt																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945618	54945618	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	254	250	0	ENST00000312783.6:c.952C>G	p.Leu318Val	p.L318V	ENST00000312783	NM_198436.1	318	Ctt/Gtt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202781	128202781	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	411	553	0	ENST00000341105.2:c.939C>A	p.His313Gln	p.H313Q	ENST00000341105	NM_032638.4	313	caC/caA																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127463	55127463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	391	417	0	ENST00000257290.5:c.251T>C	p.Val84Ala	p.V84A	ENST00000257290	NM_006206.4	84	gTc/gCc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549314	187549314	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	350	340	0	ENST00000441802.2:c.4804G>T	p.Glu1602Ter	p.E1602*	ENST00000441802	NM_005245.3	1602	Gag/Tag																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64290020	64290020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	167	396	0	ENST00000370651.3:c.463A>G	p.Lys155Glu	p.K155E	ENST00000370651	NM_003463.4	155	Aaa/Gaa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100207	157100207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	19	41	0	ENST00000346085.5:c.1144C>T	p.Pro382Ser	p.P382S	ENST00000346085	NM_020732.3	382	Ccc/Tcc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836861	151836861	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	264	401	0	ENST00000262189.6:c.14359G>T	p.Ala4787Ser	p.A4787S	ENST00000262189	NM_170606.2	4787	Gct/Tct																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981903	70981903	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs747860295		P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	457	526	0	ENST00000276594.2:c.193G>T	p.Ala65Ser	p.A65S	ENST00000276594	NM_024504.3	65	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	232	645	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																															
HGF	3082	MSKCC	GRCh37	7	81359084	81359084	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747693036		P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	157	374	0	ENST00000222390.5:c.877A>G	p.Met293Val	p.M293V	ENST00000222390	NM_000601.4	293	Atg/Gtg																																																																															
WT1	7490	MSKCC	GRCh37	11	32456671	32456671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	65	258	0	ENST00000332351.3:c.221G>A	p.Arg74Gln	p.R74Q	ENST00000332351	NM_024426.4	74	cGg/cAg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117715350	117715350	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1466068877		P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	47	325	0	ENST00000368508.3:c.1139G>T	p.Arg380Ile	p.R380I	ENST00000368508	NM_002944.2	380	aGa/aTa																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140165	50140165	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	212	630	0	ENST00000246792.3:c.260A>T	p.Gln87Leu	p.Q87L	ENST00000246792	NM_006270.3	87	cAg/cTg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176176008	176176008	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	118	352	0	ENST00000367669.3:c.107C>A	p.Ser36Ter	p.S36*	ENST00000367669	NM_022457.5	36	tCg/tAg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77047173	77047173	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	286	589	0	ENST00000356341.3:c.1371G>C	p.Met457Ile	p.M457I	ENST00000356341	NM_002576.4	457	atG/atC																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118706	115118706	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	91	548	0	ENST00000257566.3:c.635A>C	p.Asn212Thr	p.N212T	ENST00000257566	NM_016569.3	212	aAc/aCc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423642	88423642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	72	423	0	ENST00000360948.2:c.2193G>T	p.Met731Ile	p.M731I	ENST00000360948	NM_001012338.2	731	atG/atT																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500646	99500646	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779623011		P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	81	485	0	ENST00000268035.6:c.4079C>T	p.Pro1360Leu	p.P1360L	ENST00000268035	NM_000875.3	1360	cCg/cTg																																																																															
SRC	6714	MSKCC	GRCh37	20	36026227	36026227	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	277	797	0	ENST00000358208.4:c.829G>T	p.Gly277Cys	p.G277C	ENST00000358208		277	Ggc/Tgc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871240	35871240	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs749131336		P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	107	403	1	ENST00000303115.3:c.462C>A	p.His154Gln	p.H154Q	ENST00000303115	NM_002185.3	154	caC/caA																																																																															
NSD1	64324	MSKCC	GRCh37	5	176666785	176666785	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	81	432	0	ENST00000439151.2:c.4221A>T	p.Lys1407Asn	p.K1407N	ENST00000439151	NM_022455.4	1407	aaA/aaT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93974330	93974330	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	79	421	1	ENST00000369303.4:c.1724G>T	p.Gly575Val	p.G575V	ENST00000369303	NM_004440.3	575	gGc/gTc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020560	69020560	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	209	405	0	ENST00000288368.4:c.2932G>T	p.Glu978Ter	p.E978*	ENST00000288368	NM_024870.2	978	Gag/Tag																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342863	87342863	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	164	445	0	ENST00000277120.3:c.1148G>T	p.Gly383Val	p.G383V	ENST00000277120		383	gGa/gTa																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250364	110250364	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	124	701	0	ENST00000374672.4:c.311A>G	p.Asp104Gly	p.D104G	ENST00000374672	NM_004235.4	104	gAc/gGc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028841	47028841	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	216	767	0	ENST00000329236.7:c.146del	p.Gly49AlafsTer36	p.G49Afs*36	ENST00000329236	NM_001204466.1	49	Ggc/gc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107140	27107140	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	304	560	1	ENST00000324856.7:c.6753del	p.Phe2251LeufsTer16	p.F2251Lfs*16	ENST00000324856	NM_006015.4	2251	Ttt/tt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44870252	44870252	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	15	215	0	ENST00000377967.4:c.431A>G	p.Asn144Ser	p.N144S	ENST00000377967	NM_021140.2	144	aAt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	160	758	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
CBL	867	MSKCC	GRCh37	11	119148875	119148875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs397517076		P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	32	259	0	ENST00000264033.4:c.1096-1G>T		p.X366_splice	ENST00000264033	NM_005188.3	366																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602565	10602565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	178	875	1	ENST00000171111.5:c.1013C>T	p.Ser338Leu	p.S338L	ENST00000171111	NM_203500.1	338	tCg/tTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144147	11144147	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064795161		P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	175	829	1	ENST00000344626.4:c.3728G>A	p.Arg1243Gln	p.R1243Q	ENST00000344626	NM_003072.3	1243	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212113	36212113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757405245		P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	146	706	2	ENST00000222270.7:c.1864C>T	p.Pro622Ser	p.P622S	ENST00000222270	NM_014727.1	622	Ccc/Tcc																																																																															
CCND2	894	MSKCC	GRCh37	12	4385218	4385218	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	163	462	0	ENST00000261254.3:c.243G>T	p.Met81Ile	p.M81I	ENST00000261254	NM_001759.3	81	atG/atT																																																																															
TET1	80312	MSKCC	GRCh37	10	70450873	70450873	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	143	532	0	ENST00000373644.4:c.5713G>T	p.Gly1905Cys	p.G1905C	ENST00000373644	NM_030625.2	1905	Ggc/Tgc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245403	46245403	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	82	451	0	ENST00000334344.6:c.3497G>T	p.Gly1166Val	p.G1166V	ENST00000334344	NM_152641.2	1166	gGg/gTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245776	46245776	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	67	433	0	ENST00000334344.6:c.3872del	p.Gly1291GlufsTer4	p.G1291Efs*4	ENST00000334344	NM_152641.2	1290	gtG/gt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476298	88476298	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs373273419		P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	104	635	2	ENST00000360948.2:c.1834C>A	p.Pro612Thr	p.P612T	ENST00000360948	NM_001012338.2	612	Ccc/Acc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857244	9857244	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1277391984		P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	95	588	0	ENST00000330684.3:c.4157C>A	p.Pro1386His	p.P1386H	ENST00000330684	NM_001134407.1	1386	cCt/cAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923784	72923784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	194	651	0	ENST00000268489.5:c.3294G>T	p.Lys1098Asn	p.K1098N	ENST00000268489	NM_006885.3	1098	aaG/aaT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212483930	212483930	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1241007104		P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	48	492	0	ENST00000342788.4:c.2273G>C	p.Gly758Ala	p.G758A	ENST00000342788	NM_005235.2	758	gGt/gCt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561384	9561384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	104	544	0	ENST00000353224.5:c.398G>A	p.Ser133Asn	p.S133N	ENST00000353224	NM_177990.2	133	aGc/aAc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119545703	119545703	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G	rs1309366195		P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	79	288	0	ENST00000316626.5:c.1235-1G>C		p.X412_splice	ENST00000316626		412																																																																																
SOX2	6657	MSKCC	GRCh37	3	181430605	181430605	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs981843968		P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	180	625	0	ENST00000325404.1:c.457G>T	p.Val153Leu	p.V153L	ENST00000325404	NM_003106.3	153	Gtg/Ttg																																																																															
KDR	3791	MSKCC	GRCh37	4	55972006	55972006	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	79	387	0	ENST00000263923.4:c.1638C>A	p.His546Gln	p.H546Q	ENST00000263923	NM_002253.2	546	caC/caA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541451	187541451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	115	447	0	ENST00000441802.2:c.6289G>T	p.Gly2097Cys	p.G2097C	ENST00000441802	NM_005245.3	2097	Ggc/Tgc																																																																															
STK19	8859	MSKCC	GRCh37	6	31940183	31940183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	164	997	1	ENST00000375331.2:c.325C>T	p.Arg109Trp	p.R109W	ENST00000375331	NM_004197.1	109	Cgg/Tgg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730078	41730078	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	102	511	0	ENST00000242208.4:c.451G>T	p.Glu151Ter	p.E151*	ENST00000242208	NM_002192.2	151	Gag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81340800	81340800	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	32	196	0	ENST00000222390.5:c.1441G>C	p.Asp481His	p.D481H	ENST00000222390	NM_000601.4	481	Gac/Cac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0044246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	210	293	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207092	1207092	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs778376925		P-0044246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	359	758	0	ENST00000326873.7:c.180C>A	p.Tyr60Ter	p.Y60*	ENST00000326873	NM_000455.4	60	taC/taA																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984451	201984451	+	frameshift_variant,stop_lost	Frame_Shift_Del	DEL	A	A	-			P-0044246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	179	407	0	ENST00000359651.3:c.1116del	p.Ter372TrpfsTer75	p.*372Wfs*75	ENST00000359651		372	tgA/tg																																																																															
ATM	472	MSKCC	GRCh37	11	108205781	108205781	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs879254209		P-0044246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	123	283	0	ENST00000278616.4:c.8096C>G	p.Pro2699Arg	p.P2699R	ENST00000278616	NM_000051.3	2699	cCa/cGa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	28	213	1				ENST00000310581	NM_198253.2																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0044261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	14	327	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517201		P-0044261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	52	533	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602533	10602533	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1048289		P-0044261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	45	604	1	ENST00000171111.5:c.1045G>A	p.Asp349Asn	p.D349N	ENST00000171111	NM_203500.1	349	Gac/Aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0044287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	57	369	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0044287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	95	627	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391205	139391205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	97	788	2	ENST00000277541.6:c.6986G>T	p.Ser2329Ile	p.S2329I	ENST00000277541	NM_017617.3	2329	aGt/aTt																																																																															
MED12	9968	MSKCC	GRCh37	X	70346832	70346832	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	74	444	0	ENST00000374080.3:c.2699T>C	p.Leu900Pro	p.L900P	ENST00000374080		900	cTg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	215	782	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974751	21974751	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	103	224	0	ENST00000304494.5:c.76G>T	p.Glu26Ter	p.E26*	ENST00000304494	NM_000077.4	26	Gag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108172506	108172506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	51	299	0	ENST00000278616.4:c.5309C>T	p.Ser1770Leu	p.S1770L	ENST00000278616	NM_000051.3	1770	tCa/tTa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974739	21974739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	114	248	1	ENST00000304494.5:c.88G>T	p.Ala30Ser	p.A30S	ENST00000304494	NM_000077.4	30	Gcg/Tcg																																																																															
ATM	472	MSKCC	GRCh37	11	108164046	108164046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	17	148	0	ENST00000278616.4:c.4618G>A	p.Asp1540Asn	p.D1540N	ENST00000278616	NM_000051.3	1540	Gac/Aac																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739485	145739485	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772074149		P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	117	770	1	ENST00000428558.2:c.1885C>T	p.Arg629Trp	p.R629W	ENST00000428558	NM_004260.3	629	Cgg/Tgg																																																																															
AKT1	207	MSKCC	GRCh37	14	105243030	105243030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	238	791	3	ENST00000349310.3:c.253G>A	p.Glu85Lys	p.E85K	ENST00000349310	NM_001014432.1	85	Gaa/Aaa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434170	121434170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	155	768	0	ENST00000257555.6:c.1061C>A	p.Thr354Lys	p.T354K	ENST00000257555		354	aCg/aAg																																																																															
ALK	238	MSKCC	GRCh37	2	29432665	29432665	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs543620241		P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	61	671	0	ENST00000389048.3:c.3823C>T	p.Arg1275Ter	p.R1275*	ENST00000389048	NM_004304.4	1275	Cga/Tga																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8075445	8075554	+	splice_donor_variant,splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTGAAAGGAGAGGAAGCTACTTTGGTCATAAGCGAAGAGCAATCACAGCCTCTCCCATTTTAGTGTCACATATTTATCCAGATTACAGCAGCATTACATCCTCTACTTAC	CTGAAAGGAGAGGAAGCTACTTTGGTCATAAGCGAAGAGCAATCACAGCCTCTCCCATTTTAGTGTCACATATTTATCCAGATTACAGCAGCATTACATCCTCTACTTAC	-			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	44	336	0	ENST00000377482.5:c.125+1_126-1del		p.X42_splice	ENST00000377482	NM_018948.3	42																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49447284	49447284	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	178	616	0	ENST00000301067.7:c.814G>T	p.Glu272Ter	p.E272*	ENST00000301067	NM_003482.3	272	Gaa/Taa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438085	110438085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1194924964		P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	108	439	1	ENST00000375856.3:c.316G>A	p.Asp106Asn	p.D106N	ENST00000375856	NM_003749.2	106	Gac/Aac																																																																															
AKT1	207	MSKCC	GRCh37	14	105246510	105246510	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	102	705	0	ENST00000349310.3:c.90G>C	p.Lys30Asn	p.K30N	ENST00000349310	NM_001014432.1	30	aaG/aaC																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779840	3779840	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	112	823	1	ENST00000262367.5:c.5208G>C	p.Lys1736Asn	p.K1736N	ENST00000262367	NM_004380.2	1736	aaG/aaC																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350102	89350102	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	191	786	0	ENST00000301030.4:c.2848G>T	p.Asp950Tyr	p.D950Y	ENST00000301030	NM_001256183.1	950	Gac/Tac																																																																															
FANCA	2175	MSKCC	GRCh37	16	89806432	89806432	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs878853665		P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	168	584	0	ENST00000389301.3:c.3904T>C	p.Trp1302Arg	p.W1302R	ENST00000389301	NM_000135.2	1302	Tgg/Cgg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217641	7217641	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	62	523	0	ENST00000380728.2:c.286G>C	p.Glu96Gln	p.E96Q	ENST00000380728		96	Gag/Cag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52676062	52676062	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs1258762163		P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	48	274	3	ENST00000394830.3:c.996-1G>T		p.X332_splice	ENST00000394830	NM_018313.4	332																																																																																
PIK3CB	5291	MSKCC	GRCh37	3	138461621	138461621	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C	rs1450143044		P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	103	359	0	ENST00000289153.2:c.400C>G	p.Leu134Val	p.L134V	ENST00000289153	NM_006219.2	134	Ctg/Gtg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141079	55141080	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	146	387	1	ENST00000257290.5:c.1725_1726delinsTT	p.Asp576Tyr	p.D576Y	ENST00000257290	NM_006206.4	575	gtGGac/gtTTac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540863	187540863	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	104	343	0	ENST00000441802.2:c.6877T>C	p.Ser2293Pro	p.S2293P	ENST00000441802	NM_005245.3	2293	Tct/Cct																																																																															
APC	324	MSKCC	GRCh37	5	112178100	112178100	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs878853466		P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	54	397	0	ENST00000257430.4:c.6809C>T	p.Ser2270Phe	p.S2270F	ENST00000257430	NM_000038.5	2270	tCt/tTt																																																																															
FYN	2534	MSKCC	GRCh37	6	112015871	112015871	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	67	446	0	ENST00000368678.4:c.1070G>C	p.Arg357Thr	p.R357T	ENST00000368678		357	aGa/aCa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786887	135786887	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	76	442	0	ENST00000298552.3:c.982C>G	p.Gln328Glu	p.Q328E	ENST00000298552	NM_001162426.1	328	Cag/Gag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	92	440	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781509	9781509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	126	531	0	ENST00000377346.4:c.1819G>A	p.Glu607Lys	p.E607K	ENST00000377346	NM_005026.3	607	Gag/Aag																																																																															
B2M	567	MSKCC	GRCh37	15	45003747	45003747	+	start_lost	Translation_Start_Site	SNP	G	G	A	rs1057519877		P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	46	481	0	ENST00000558401.1:c.3G>A	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578458	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	207	926	4	ENST00000269305.4:c.472_473delinsTT	p.Arg158Phe	p.R158F	ENST00000269305	NM_001126112.2	158	CGc/TTc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139822	55139822	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868384918		P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	37	559	0	ENST00000257290.5:c.1483G>A	p.Glu495Lys	p.E495K	ENST00000257290	NM_006206.4	495	Gag/Aag																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946060	13946060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	45	290	0	ENST00000405192.2:c.1036G>A	p.Glu346Lys	p.E346K	ENST00000405192	NM_001163147.1	346	Gaa/Aaa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118372495	118372495	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	82	594	0	ENST00000534358.1:c.6428C>G	p.Ser2143Ter	p.S2143*	ENST00000534358	NM_005933.3	2143	tCa/tGa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602848	10602848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	200	1051	1	ENST00000171111.5:c.730G>A	p.Glu244Lys	p.E244K	ENST00000171111	NM_203500.1	244	Gag/Aag																																																																															
PARP1	142	MSKCC	GRCh37	1	226549706	226549706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	68	485	0	ENST00000366794.5:c.2927C>T	p.Ser976Leu	p.S976L	ENST00000366794	NM_001618.3	976	tCa/tTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151833982	151833982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	45	492	0	ENST00000262189.6:c.14671G>A	p.Glu4891Lys	p.E4891K	ENST00000262189	NM_170606.2	4891	Gaa/Aaa																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400855	72400855	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	50	343	0	ENST00000357731.5:c.316C>A	p.Gln106Lys	p.Q106K	ENST00000357731	NM_173808.2	106	Cag/Aag																																																																															
RET	5979	MSKCC	GRCh37	10	43600468	43600468	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	91	632	0	ENST00000355710.3:c.694G>C	p.Glu232Gln	p.E232Q	ENST00000355710	NM_020975.4	232	Gag/Cag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118353178	118353178	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	36	304	0	ENST00000534358.1:c.4054A>G	p.Ser1352Gly	p.S1352G	ENST00000534358	NM_005933.3	1352	Agt/Ggt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441782	49441782	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1214991700		P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	43	600	0	ENST00000301067.7:c.4202C>G	p.Ser1401Cys	p.S1401C	ENST00000301067	NM_003482.3	1401	tCt/tGt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95572122	95572122	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	29	316	0	ENST00000343455.3:c.2988-2A>C		p.X996_splice	ENST00000343455	NM_177438.2	996																																																																																
KNSTRN	90417	MSKCC	GRCh37	15	40675055	40675055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	213	800	0	ENST00000249776.8:c.19C>T	p.Pro7Ser	p.P7S	ENST00000249776	NM_033286.3	7	Ccg/Tcg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129182	2129182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	164	864	1	ENST00000219476.3:c.3116C>T	p.Thr1039Met	p.T1039M	ENST00000219476	NM_000548.3	1039	aCg/aTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640763	3640763	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs999262527		P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	58	668	0	ENST00000294008.3:c.2876C>T	p.Ser959Phe	p.S959F	ENST00000294008	NM_032444.2	959	tCc/tTc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3656561	3656561	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs768845750		P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	143	845	0	ENST00000294008.3:c.674G>C	p.Arg225Thr	p.R225T	ENST00000294008	NM_032444.2	225	aGa/aCa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934531	9934531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	107	426	1	ENST00000330684.3:c.1624G>T	p.Gly542Cys	p.G542C	ENST00000330684	NM_001134407.1	542	Ggc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827575	72827575	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	117	700	0	ENST00000268489.5:c.9006G>T	p.Lys3002Asn	p.K3002N	ENST00000268489	NM_006885.3	3002	aaG/aaT																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348335	89348335	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1232258259		P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	156	990	0	ENST00000301030.4:c.4615G>A	p.Glu1539Lys	p.E1539K	ENST00000301030	NM_001256183.1	1539	Gag/Aag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246785	41246785	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	38	479	0	ENST00000357654.3:c.763G>C	p.Glu255Gln	p.E255Q	ENST00000357654	NM_007294.3	255	Gag/Cag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436128	56436128	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1170091784		P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	55	729	0	ENST00000407977.2:c.1009C>G	p.Arg337Gly	p.R337G	ENST00000407977		337	Cga/Gga																																																																															
YES1	7525	MSKCC	GRCh37	18	724516	724516	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	58	268	0	ENST00000314574.4:c.1540G>C	p.Asp514His	p.D514H	ENST00000314574	NM_005433.3	514	Gat/Cat																																																																															
BCL2	596	MSKCC	GRCh37	18	60795989	60795989	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	68	491	0	ENST00000333681.4:c.589G>T	p.Ala197Ser	p.A197S	ENST00000333681		197	Gcc/Tcc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198272784	198272784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	55	493	0	ENST00000335508.6:c.1177G>A	p.Asp393Asn	p.D393N	ENST00000335508	NM_012433.2	393	Gat/Aat																																																																															
CASP8	841	MSKCC	GRCh37	2	202131273	202131273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	90	447	0	ENST00000358485.4:c.241C>T	p.Leu81Phe	p.L81F	ENST00000358485	NM_001080125.1	81	Ctc/Ttc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662214	227662214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	129	868	0	ENST00000305123.5:c.1241C>T	p.Ala414Val	p.A414V	ENST00000305123	NM_005544.2	414	gCt/gTt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230899	66230899	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	53	329	0	ENST00000273854.3:c.2072G>T	p.Ser691Ile	p.S691I	ENST00000273854	NM_004439.5	691	aGt/aTt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509762	106509762	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	80	570	0	ENST00000359195.3:c.1756C>A	p.Pro586Thr	p.P586T	ENST00000359195	NM_002649.2	586	Cca/Aca																																																																															
PREX2	80243	MSKCC	GRCh37	8	68934305	68934305	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	100	482	0	ENST00000288368.4:c.371G>T	p.Ser124Ile	p.S124I	ENST00000288368	NM_024870.2	124	aGt/aTt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211500	98211500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	94	605	0	ENST00000331920.6:c.3655G>A	p.Asp1219Asn	p.D1219N	ENST00000331920	NM_000264.3	1219	Gat/Aat																																																																															
TSC1	7248	MSKCC	GRCh37	9	135798873	135798873	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	34	240	0	ENST00000298552.3:c.370A>T	p.Thr124Ser	p.T124S	ENST00000298552	NM_001162426.1	124	Act/Tct																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139404364	139404364	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	133	903	0	ENST00000277541.6:c.2790C>G	p.Phe930Leu	p.F930L	ENST00000277541	NM_017617.3	930	ttC/ttG																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123504057	123504057	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	60	304	0	ENST00000371139.4:c.233G>T	p.Arg78Leu	p.R78L	ENST00000371139	NM_001114937.2	78	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579316	7579320	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGT	CAAGT	-			P-0044539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	30	471	0	ENST00000269305.4:c.367_371del	p.Thr123HisfsTer24	p.T123Hfs*24	ENST00000269305	NM_001126112.2	123	ACTTGc/c																																																																															
CDC42	998	MSKCC	GRCh37	1	22417970	22417970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	68	64	1	ENST00000344548.3:c.536C>T	p.Pro179Leu	p.P179L	ENST00000344548	NM_001039802.1	179	cCt/cTt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716170	243716170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	283	423	0	ENST00000263826.5:c.1024G>T	p.Gly342Trp	p.G342W	ENST00000263826	NM_005465.4	342	Ggg/Tgg																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154256	2154256	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	259	529	1	ENST00000434045.2:c.672del	p.His224GlnfsTer32	p.H224Qfs*32	ENST00000434045	NM_001127598.1	224	caC/ca																																																																															
WT1	7490	MSKCC	GRCh37	11	32414266	32414266	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	91	284	0	ENST00000332351.3:c.1285G>T	p.Glu429Ter	p.E429*	ENST00000332351	NM_024426.4	429	Gaa/Taa																																																																															
PGR	5241	MSKCC	GRCh37	11	100998999	100998999	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	139	367	0	ENST00000325455.5:c.803T>G	p.Val268Gly	p.V268G	ENST00000325455	NM_001202474.3	268	gTc/gGc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859402	57859402	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	182	361	0	ENST00000228682.2:c.547C>A	p.Leu183Met	p.L183M	ENST00000228682	NM_005269.2	183	Ctg/Atg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861264	57861264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	248	374	0	ENST00000228682.2:c.1061G>T	p.Arg354Leu	p.R354L	ENST00000228682	NM_005269.2	354	cGg/cTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865101	57865101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1208	132	542	0	ENST00000228682.2:c.2578C>T	p.Leu860Phe	p.L860F	ENST00000228682	NM_005269.2	860	Ctc/Ttc																																																																															
POLE	5426	MSKCC	GRCh37	12	133254238	133254238	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	285	378	0	ENST00000320574.5:c.646G>C	p.Asp216His	p.D216H	ENST00000320574	NM_006231.2	216	Gac/Cac																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436027	110436027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	269	493	1	ENST00000375856.3:c.2374G>T	p.Gly792Trp	p.G792W	ENST00000375856	NM_003749.2	792	Ggg/Tgg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046662	30046662	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	149	320	0	ENST00000331968.5:c.2521G>T	p.Asp841Tyr	p.D841Y	ENST00000331968	NM_002742.2	841	Gac/Tac																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582047	95582062	+	frameshift_variant	Frame_Shift_Del	DEL	CACCATCGTCAGGCCT	CACCATCGTCAGGCCT	-			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	97	209	0	ENST00000343455.3:c.1849_1864del	p.Arg617ValfsTer28	p.R617Vfs*28	ENST00000343455	NM_177438.2	617	AGGCCTGACGATGGTGgt/gt																																																																															
MGA	23269	MSKCC	GRCh37	15	42003405	42003405	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	197	350	0	ENST00000219905.7:c.2942A>T	p.Gln981Leu	p.Q981L	ENST00000219905	NM_001164273.1	981	cAg/cTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274102	10274102	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs769971551		P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	232	486	0	ENST00000330684.3:c.167G>T	p.Gly56Val	p.G56V	ENST00000330684	NM_001134407.1	56	gGc/gTc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868073	56868073	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	124	316	0	ENST00000308159.5:c.1571G>T	p.Arg524Leu	p.R524L	ENST00000308159	NM_014669.4	524	cGg/cTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992078	72992078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	261	391	0	ENST00000268489.5:c.1967G>T	p.Gly656Val	p.G656V	ENST00000268489	NM_006885.3	656	gGc/gTc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347299	89347299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	101	480	0	ENST00000301030.4:c.5651C>T	p.Ser1884Leu	p.S1884L	ENST00000301030	NM_001256183.1	1884	tCa/tTa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89833592	89833592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	128	288	0	ENST00000389301.3:c.2558G>T	p.Arg853Leu	p.R853L	ENST00000389301	NM_000135.2	853	cGa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	442	526	0	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29560177	29560177	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	128	225	0	ENST00000358273.4:c.3654A>T	p.Gln1218His	p.Q1218H	ENST00000358273	NM_001042492.2	1218	caA/caT																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120092	70120092	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1201663893		P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	25	33	0	ENST00000245479.2:c.1094C>T	p.Ala365Val	p.A365V	ENST00000245479	NM_000346.3	365	gCg/gTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220371	1220371	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	189	353	0	ENST00000326873.7:c.465-1G>C		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602595	10602595	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	279	490	0	ENST00000171111.5:c.983T>C	p.Ile328Thr	p.I328T	ENST00000171111	NM_203500.1	328	aTc/aCc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105504	11105504	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	182	323	0	ENST00000344626.4:c.1420G>T	p.Glu474Ter	p.E474*	ENST00000344626	NM_003072.3	474	Gaa/Taa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36217231	36217231	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1392289007		P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	364	482	0	ENST00000222270.7:c.3980G>C	p.Arg1327Thr	p.R1327T	ENST00000222270	NM_014727.1	1327	aGg/aCg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082410	16082410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	122	481	0	ENST00000281043.3:c.224C>T	p.Pro75Leu	p.P75L	ENST00000281043	NM_005378.4	75	cCg/cTg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190656573	190656573	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1377084219		P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	196	153	1	ENST00000441310.2:c.38C>T	p.Ser13Leu	p.S13L	ENST00000441310	NM_000534.4	13	tCa/tTa																																																																															
PMS1	5378	MSKCC	GRCh37	2	190718963	190718963	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	77	118	0	ENST00000441310.2:c.967-2A>G		p.X323_splice	ENST00000441310	NM_000534.4	323																																																																																
INHA	3623	MSKCC	GRCh37	2	220439743	220439743	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	407	521	0	ENST00000243786.2:c.596G>C	p.Arg199Pro	p.R199P	ENST00000243786	NM_002191.3	199	cGc/cCc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660840	227660840	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	102	406	2	ENST00000305123.5:c.2615C>A	p.Pro872His	p.P872H	ENST00000305123	NM_005544.2	872	cCt/cAt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520249	9520249	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs575889963		P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	128	309	0	ENST00000353224.5:c.2020C>T	p.Arg674Trp	p.R674W	ENST00000353224	NM_177990.2	674	Cgg/Tgg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546901	9546901	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	182	345	1	ENST00000353224.5:c.1121C>A	p.Pro374Gln	p.P374Q	ENST00000353224	NM_177990.2	374	cCg/cAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40727142	40727142	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	197	403	0	ENST00000373198.4:c.3822C>A	p.Asn1274Lys	p.N1274K	ENST00000373198	NM_133170.3	1274	aaC/aaA																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24159032	24159032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	105	459	0	ENST00000263121.7:c.704C>T	p.Pro235Leu	p.P235L	ENST00000263121	NM_003073.3	235	cCa/cTa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89176389	89176391	+	frameshift_variant	Frame_Shift_Ins	INS	GGG	GGG	CGGA			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	91	183	1	ENST00000336596.2:c.119_121delinsCGGA	p.Gly40AlafsTer21	p.G40Afs*21	ENST00000336596	NM_005233.5	40	gGGGag/gCGGAag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445067	89445067	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	192	309	1	ENST00000336596.2:c.1387C>A	p.Pro463Thr	p.P463T	ENST00000336596	NM_005233.5	463	Cct/Act																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664784	138664784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	142	186	1	ENST00000330315.3:c.781G>A	p.Val261Met	p.V261M	ENST00000330315	NM_023067.3	261	Gtg/Atg																																																																															
KIT	3815	MSKCC	GRCh37	4	55602933	55602933	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	140	288	0	ENST00000288135.5:c.2643G>T	p.Lys881Asn	p.K881N	ENST00000288135	NM_000222.2	881	aaG/aaT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231750	66231750	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	50	240	0	ENST00000273854.3:c.1950C>G	p.Tyr650Ter	p.Y650*	ENST00000273854	NM_004439.5	650	taC/taG																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383965	84383965	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	88	322	0	ENST00000321945.7:c.887C>G	p.Ser296Ter	p.S296*	ENST00000321945	NM_139076.2	296	tCa/tGa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247328	153247328	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	126	245	1	ENST00000281708.4:c.1474C>T	p.Gln492Ter	p.Q492*	ENST00000281708	NM_033632.3	492	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539055	187539055	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	87	337	0	ENST00000441802.2:c.8685G>T	p.Lys2895Asn	p.K2895N	ENST00000441802	NM_005245.3	2895	aaG/aaT																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515117	149515117	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	98	390	0	ENST00000261799.4:c.364+1G>T		p.X122_splice	ENST00000261799	NM_002609.3	122																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176523672	176523672	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	263	532	0	ENST00000292408.4:c.2083G>T	p.Val695Leu	p.V695L	ENST00000292408	NM_213647.1	695	Gtg/Ttg																																																																															
IRF4	3662	MSKCC	GRCh37	6	393205	393205	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1000698747		P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	179	317	0	ENST00000380956.4:c.53G>T	p.Ser18Ile	p.S18I	ENST00000380956	NM_001195286.1	18	aGc/aTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187474	32187474	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	222	489	0	ENST00000375023.3:c.1405G>T	p.Gly469Cys	p.G469C	ENST00000375023	NM_004557.3	469	Ggc/Tgc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816548	32816548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	291	557	0	ENST00000354258.4:c.1627G>T	p.Asp543Tyr	p.D543Y	ENST00000354258	NM_000593.5	543	Gac/Tac																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522175	157522175	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	192	448	0	ENST00000346085.5:c.4447G>C	p.Gly1483Arg	p.G1483R	ENST00000346085	NM_020732.3	1483	Ggc/Cgc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962271	2962271	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867239716		P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	105	464	0	ENST00000396946.4:c.2266G>A	p.Glu756Lys	p.E756K	ENST00000396946	NM_032415.4	756	Gaa/Aaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974723	21974723	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs746834149		P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	188	275	0	ENST00000304494.5:c.104G>T	p.Gly35Val	p.G35V	ENST00000304494	NM_000077.4	35	gGg/gTg																																																																															
TEK	7010	MSKCC	GRCh37	9	27168493	27168493	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	137	258	0	ENST00000380036.4:c.365C>A	p.Ala122Asp	p.A122D	ENST00000380036	NM_000459.3	122	gCt/gAt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911584	101911584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	101	254	0	ENST00000374994.4:c.1509G>A	p.Met503Ile	p.M503I	ENST00000374994	NM_004612.2	503	atG/atA																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250378	110250378	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	126	579	0	ENST00000374672.4:c.297C>G	p.Phe99Leu	p.F99L	ENST00000374672	NM_004235.4	99	ttC/ttG																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139810999	139810999	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	251	469	0	ENST00000247668.2:c.610G>C	p.Asp204His	p.D204H	ENST00000247668	NM_021138.3	204	Gac/Cac																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650296	48650296	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781920985		P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	243	260	0	ENST00000376670.3:c.266G>A	p.Gly89Glu	p.G89E	ENST00000376670	NM_002049.3	89	gGg/gAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412698	63412698	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	210	206	0	ENST00000330258.3:c.469G>T	p.Glu157Ter	p.E157*	ENST00000330258	NM_152424.3	157	Gag/Tag																																																																															
STAG2	10735	MSKCC	GRCh37	X	123210214	123210214	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	97	173	0	ENST00000218089.9:c.2566G>C	p.Glu856Gln	p.E856Q	ENST00000218089	NM_001042749.1	856	Gaa/Caa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244250	41244250	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AA			P-0044557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	192	389	1	ENST00000357654.3:c.3298delinsTT	p.Gly1100LeufsTer3	p.G1100Lfs*3	ENST00000357654	NM_007294.3	1100	Gga/TTga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0044573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	78	335	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913324		P-0044573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			405	156	634	0	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519946		P-0044573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			502	27	544	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108138042	108138042	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			195	57	293	0	ENST00000278616.4:c.2611G>T	p.Glu871Ter	p.E871*	ENST00000278616	NM_000051.3	871	Gaa/Taa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858574	57858574	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			536	149	605	0	ENST00000228682.2:c.312C>G	p.Ser104Arg	p.S104R	ENST00000228682	NM_005269.2	104	agC/agG																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644821	67644821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			386	78	428	0	ENST00000264010.4:c.86G>T	p.Arg29Leu	p.R29L	ENST00000264010	NM_006565.3	29	cGg/cTg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7990625	7990625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			443	141	448	0	ENST00000319144.4:c.136G>A	p.Ala46Thr	p.A46T	ENST00000319144	NM_001139.2	46	Gca/Aca																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38955718	38955718	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs750704208		P-0044573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	123	287	0	ENST00000357387.3:c.2588A>G	p.Tyr863Cys	p.Y863C	ENST00000357387	NM_152756.3	863	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112162822	112162822	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	67	317	0	ENST00000257430.4:c.1426G>T	p.Ala476Ser	p.A476S	ENST00000257430	NM_000038.5	476	Gca/Tca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376034	8376034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			187	57	260	0	ENST00000356435.5:c.4563T>A	p.Asp1521Glu	p.D1521E	ENST00000356435		1521	gaT/gaA																																																																															
PAX5	5079	MSKCC	GRCh37	9	37006481	37006481	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			222	48	244	0	ENST00000358127.4:c.464G>T	p.Ser155Ile	p.S155I	ENST00000358127	NM_001280556.1	155	aGt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0044656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	336	625	3	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47656934	47656936	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs1295803849		P-0044656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	123	320	1	ENST00000233146.2:c.1134_1136del	p.Glu378del	p.E378del	ENST00000233146	NM_000251.2	377	cAAGaa/caa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541504	187541504	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1272319296		P-0044656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	19	415	0	ENST00000441802.2:c.6236C>T	p.Pro2079Leu	p.P2079L	ENST00000441802	NM_005245.3	2079	cCg/cTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0044699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	74	483	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780068		P-0044699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	20	652	0	ENST00000269305.4:c.472C>T	p.Arg158Cys	p.R158C	ENST00000269305	NM_001126112.2	158	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0044699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	75	375	0	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0044699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	71	374	0				ENST00000310581	NM_198253.2																																																																																	
SETD2	29072	MSKCC	GRCh37	3	47163373	47163373	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	79	233	0	ENST00000409792.3:c.2753C>A	p.Ser918Ter	p.S918*	ENST00000409792	NM_014159.6	918	tCa/tAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49439953	49439953	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs749332791		P-0044699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	95	506	0	ENST00000301067.7:c.4588A>G	p.Met1530Val	p.M1530V	ENST00000301067	NM_003482.3	1530	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579854	7579854	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0044699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	93	540	0	ENST00000269305.4:c.59C>G	p.Ser20Ter	p.S20*	ENST00000269305	NM_001126112.2	20	tCa/tGa																																																																															
CALR	811	MSKCC	GRCh37	19	13054625	13054625	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	60	348	0	ENST00000316448.5:c.1152C>G	p.Asp384Glu	p.D384E	ENST00000316448	NM_004343.3	384	gaC/gaG																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186503784	186503785	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0044699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	56	367	0	ENST00000323963.5:c.463_464del	p.Ile155CysfsTer10	p.I155Cfs*10	ENST00000323963		154	cAT/c																																																																															
MSH3	4437	MSKCC	GRCh37	5	80169084	80169084	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	52	352	0	ENST00000265081.6:c.3280G>T	p.Glu1094Ter	p.E1094*	ENST00000265081	NM_002439.4	1094	Gaa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874977	151874977	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	25	154	0	ENST00000262189.6:c.7561G>C	p.Asp2521His	p.D2521H	ENST00000262189	NM_170606.2	2521	Gat/Cat																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794353	242794353	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1282191832		P-0044814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	70	986	1	ENST00000334409.5:c.589C>T	p.Arg197Ter	p.R197*	ENST00000334409	NM_005018.2	197	Cga/Tga																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032175	26032175	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	44	465	0	ENST00000244661.2:c.114G>C	p.Lys38Asn	p.K38N	ENST00000244661	NM_003537.3	38	aaG/aaC																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0044814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	52	584	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874014	151874014	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	38	412	0	ENST00000262189.6:c.8524A>T	p.Asn2842Tyr	p.N2842Y	ENST00000262189	NM_170606.2	2842	Aat/Tat																																																																															
STAG2	10735	MSKCC	GRCh37	X	123184041	123184041	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1375196362		P-0044814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	31	270	0	ENST00000218089.9:c.899C>T	p.Ala300Val	p.A300V	ENST00000218089	NM_001042749.1	300	gCg/gTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	48	288	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092809	27092809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	33	431	0	ENST00000324856.7:c.2830C>T	p.Gln944Ter	p.Q944*	ENST00000324856	NM_006015.4	944	Cag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47058705	47058706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	51	349	0	ENST00000409792.3:c.7572dup	p.Lys2525Ter	p.K2525*	ENST00000409792	NM_014159.6	2524	-/T																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244401	46244401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	31	375	0	ENST00000334344.6:c.2495C>T	p.Ser832Leu	p.S832L	ENST00000334344	NM_152641.2	832	tCa/tTa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43762067	43762067	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	27	412	0	ENST00000382044.4:c.1378C>T	p.Gln460Ter	p.Q460*	ENST00000382044	NM_001141980.1	460	Cag/Tag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157256700	157256700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	13	207	0	ENST00000346085.5:c.2027C>T	p.Ser676Leu	p.S676L	ENST00000346085	NM_020732.3	676	tCa/tTa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779805	3779812	+	frameshift_variant	Frame_Shift_Del	DEL	CCCAGCCC	CCCAGCCC	-			P-0044886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	83	652	0	ENST00000262367.5:c.5236_5243del	p.Gly1746ProfsTer3	p.G1746Pfs*3	ENST00000262367	NM_004380.2	1746	GGGCTGGGc/c																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81990330	81990330	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761018891		P-0044886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	28	355	0	ENST00000359376.3:c.3601C>T	p.Arg1201Cys	p.R1201C	ENST00000359376	NM_002661.3	1201	Cgc/Tgc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30320921	30320921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	23	401	0	ENST00000322652.5:c.1331C>T	p.Ala444Val	p.A444V	ENST00000322652	NM_015355.2	444	gCa/gTa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149503923	149503923	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0044886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	44	429	0	ENST00000261799.4:c.1913C>A	p.Ser638Tyr	p.S638Y	ENST00000261799	NM_002609.3	638	tCc/tAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0044902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	284	310	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044925	47044925	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	248	906	0	ENST00000329236.7:c.2017G>T	p.Glu673Ter	p.E673*	ENST00000329236	NM_001204466.1	673	Gag/Tag																																																																															
PGR	5241	MSKCC	GRCh37	11	100998664	100998664	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	226	771	0	ENST00000325455.5:c.1138T>A	p.Phe380Ile	p.F380I	ENST00000325455	NM_001202474.3	380	Ttc/Atc																																																																															
ATM	472	MSKCC	GRCh37	11	108180942	108180942	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	61	223	0	ENST00000278616.4:c.5818G>T	p.Glu1940Ter	p.E1940*	ENST00000278616	NM_000051.3	1940	Gaa/Taa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	406333	406333	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	86	492	0	ENST00000399788.2:c.4108G>C	p.Glu1370Gln	p.E1370Q	ENST00000399788	NM_001042603.1	1370	Gaa/Caa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43762184	43762184	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	99	634	1	ENST00000382044.4:c.1261G>T	p.Glu421Ter	p.E421*	ENST00000382044	NM_001141980.1	421	Gag/Tag																																																																															
CYLD	1540	MSKCC	GRCh37	16	50785784	50785784	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	132	437	0	ENST00000398568.2:c.774A>T	p.Lys258Asn	p.K258N	ENST00000398568	NM_001042412.1	258	aaA/aaT																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825473	50825473	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	89	264	0	ENST00000398568.2:c.2104G>T	p.Ala702Ser	p.A702S	ENST00000398568	NM_001042412.1	702	Gca/Tca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821140	72821140	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs780518082		P-0044902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	203	623	1	ENST00000268489.5:c.11035G>T	p.Val3679Leu	p.V3679L	ENST00000268489	NM_006885.3	3679	Gtg/Ttg																																																																															
KDR	3791	MSKCC	GRCh37	4	55946143	55946143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	73	302	0	ENST00000263923.4:c.4036G>T	p.Asp1346Tyr	p.D1346Y	ENST00000263923	NM_002253.2	1346	Gac/Tac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2956984	2956984	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	221	536	0	ENST00000396946.4:c.2643C>A	p.Ser881Arg	p.S881R	ENST00000396946	NM_032415.4	881	agC/agA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0044956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	113	642	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0044956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	181	921	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643299	38643299	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1404721092		P-0044956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	49	483	0	ENST00000299084.4:c.769C>T	p.Arg257Cys	p.R257C	ENST00000299084	NM_152594.2	257	Cgc/Tgc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165728	118165728	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	67	466	0	ENST00000369448.3:c.238T>G	p.Leu80Val	p.L80V	ENST00000369448	NM_017709.3	80	Ttg/Gtg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118372419	118372419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	72	575	0	ENST00000534358.1:c.6352G>A	p.Glu2118Lys	p.E2118K	ENST00000534358	NM_005933.3	2118	Gaa/Aaa																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607771	46607771	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375135104		P-0044956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	94	953	1	ENST00000263734.3:c.1960G>A	p.Val654Ile	p.V654I	ENST00000263734	NM_001430.4	654	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112175429	112175430	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCCACTCATGTTTAGCAG			P-0044956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	29	303	0	ENST00000257430.4:c.4139_4157dup	p.Arg1386SerfsTer6	p.R1386Sfs*6	ENST00000257430	NM_000038.5	1380	acc/aCCCCACTCATGTTTAGCAGcc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492934	56492953	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	CTCATGCTACCAGCTGCAGC	CTCATGCTACCAGCTGCAGC	GCT			P-0044956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	18	230	1	ENST00000407977.2:c.-15_5delinsAGC		p.*5*	ENST00000407977																																																																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	272	334	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347494	89347494	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	119	549	0	ENST00000301030.4:c.5456C>G	p.Ser1819Cys	p.S1819C	ENST00000301030	NM_001256183.1	1819	tCc/tGc																																																																															
RAD51	5888	MSKCC	GRCh37	15	41022160	41022160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	88	477	0	ENST00000267868.3:c.884C>A	p.Ala295Glu	p.A295E	ENST00000267868	NM_002875.4	295	gCa/gAa																																																																															
INSR	3643	MSKCC	GRCh37	19	7122748	7122748	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	148	640	0	ENST00000302850.5:c.3406A>G	p.Met1136Val	p.M1136V	ENST00000302850	NM_000208.2	1136	Atg/Gtg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488717	212488717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	98	409	0	ENST00000342788.4:c.2132G>T	p.Arg711Leu	p.R711L	ENST00000342788	NM_005235.2	711	cGt/cTt																																																																															
ERG	2078	MSKCC	GRCh37	21	39755513	39755513	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1203601203		P-0044969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	74	453	0	ENST00000288319.7:c.1252A>G	p.Met418Val	p.M418V	ENST00000288319	NM_182918.3	418	Atg/Gtg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540110	187540110	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	60	315	0	ENST00000441802.2:c.7630G>C	p.Glu2544Gln	p.E2544Q	ENST00000441802	NM_005245.3	2544	Gag/Cag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0044988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	79	476	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0054419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	171	669	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
ERF	2077	MSKCC	GRCh37	19	42752801	42752801	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	180	813	0	ENST00000222329.4:c.1463G>T	p.Trp488Leu	p.W488L	ENST00000222329	NM_006494.2	488	tGg/tTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53244019	53244020	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	127	565	0	ENST00000375401.3:c.973dup	p.Tyr325LeufsTer11	p.Y325Lfs*11	ENST00000375401	NM_004187.3	325	tat/tTat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0055088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	103	516	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
TET1	80312	MSKCC	GRCh37	10	70451087	70451087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	197	755	0	ENST00000373644.4:c.5927C>T	p.Ser1976Phe	p.S1976F	ENST00000373644	NM_030625.2	1976	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs587780074		P-0055088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	178	736	0	ENST00000269305.4:c.737T>G	p.Met246Arg	p.M246R	ENST00000269305	NM_001126112.2	246	aTg/aGg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89815158	89815158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	121	832	2	ENST00000389301.3:c.3257C>T	p.Pro1086Leu	p.P1086L	ENST00000389301	NM_000135.2	1086	cCt/cTt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15973806	15973806	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0055088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	48	586	0	ENST00000268712.3:c.4186C>T	p.Gln1396Ter	p.Q1396*	ENST00000268712	NM_006311.3	1396	Caa/Taa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678773	52678773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	80	403	0	ENST00000394830.3:c.846G>A	p.Met282Ile	p.M282I	ENST00000394830	NM_018313.4	282	atG/atA																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98215857	98215858	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0062760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	36	467	0	ENST00000331920.6:c.3351dup	p.Ala1118CysfsTer27	p.A1118Cfs*27	ENST00000331920	NM_000264.3	1117	-/T																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034489	47034489	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0062760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	20	232	0	ENST00000329236.7:c.343C>T	p.Gln115Ter	p.Q115*	ENST00000329236	NM_001204466.1	115	Cag/Tag																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33430314	33430314	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	40	641	0	ENST00000335858.7:c.361G>C	p.Glu121Gln	p.E121Q	ENST00000335858	NM_133629.2	121	Gag/Cag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880991	37880991	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			714	39	661	0	ENST00000269571.5:c.2320A>G	p.Met774Val	p.M774V	ENST00000269571		774	Atg/Gtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0000370-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			38	59	306	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129430	64129430	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000370-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			41	21	424	0	ENST00000334205.4:c.862G>T	p.Gly288Trp	p.G288W	ENST00000334205	NM_003942.2	288	Ggg/Tgg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736308	243736308	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754990008		P-0000370-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			57	10	364	0	ENST00000263826.5:c.739C>T	p.Arg247Cys	p.R247C	ENST00000263826	NM_005465.4	247	Cgc/Tgc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420300	88420300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000370-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			35	20	311	0	ENST00000360948.2:c.2386C>T	p.Pro796Ser	p.P796S	ENST00000360948	NM_001012338.2	796	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0000370-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			21	12	543	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983761	15983761	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs752731748		P-0000370-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			49	25	326	0	ENST00000268712.3:c.3361G>T	p.Gly1121Cys	p.G1121C	ENST00000268712	NM_006311.3	1121	Ggt/Tgt																																																																															
ATRX	546	MSKCC	GRCh37	X	76931740	76931740	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000370-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			65	34	662	0	ENST00000373344.5:c.3790G>T	p.Asp1264Tyr	p.D1264Y	ENST00000373344	NM_000489.3	1264	Gac/Tac																																																																															
STAG2	10735	MSKCC	GRCh37	X	123211898	123211898	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000370-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			74	23	598	0	ENST00000218089.9:c.2765G>T	p.Ser922Ile	p.S922I	ENST00000218089	NM_001042749.1	922	aGt/aTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221787	55221788	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0000370-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			26	31	418	0	ENST00000275493.2:c.831_832delinsTT	p.Met277_Asp278delinsIleTyr	p.M277_D278delinsIY	ENST00000275493	NM_005228.3	277	atGGat/atTTat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627729	187627729	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758545401		P-0000840-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	96	380	0	ENST00000441802.2:c.3253G>A	p.Gly1085Ser	p.G1085S	ENST00000441802	NM_005245.3	1085	Ggt/Agt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2127712	2127712	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000840-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			231	72	212	0	ENST00000219476.3:c.2951A>T	p.Glu984Val	p.E984V	ENST00000219476	NM_000548.3	984	gAa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001683-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	123	378	0	ENST00000269305.4:c.949del	p.Gln317SerfsTer28	p.Q317Sfs*28	ENST00000269305	NM_001126112.2	317	Cag/ag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233146	46233146	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001683-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			676	174	365	0	ENST00000334344.6:c.1365G>C	p.Gln455His	p.Q455H	ENST00000334344	NM_152641.2	455	caG/caC																																																																															
MDM2	4193	MSKCC	GRCh37	12	69218393	69218393	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001683-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			729	176	489	0	ENST00000462284.1:c.485C>G	p.Pro162Arg	p.P162R	ENST00000462284	NM_002392.5	162	cCa/cGa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244391	41244391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001683-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			703	147	479	0	ENST00000357654.3:c.3157G>A	p.Glu1053Lys	p.E1053K	ENST00000357654	NM_007294.3	1053	Gaa/Aaa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367818	15367818	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1385204010		P-0001683-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			428	28	342	0	ENST00000263377.2:c.1508C>G	p.Ser503Cys	p.S503C	ENST00000263377	NM_058243.2	503	tCt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	161	428	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951964	178951964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	136	511	0	ENST00000263967.3:c.3019G>C	p.Gly1007Arg	p.G1007R	ENST00000263967	NM_006218.2	1007	Ggc/Cgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089777	27089777	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	40	156	0	ENST00000324856.7:c.2732+1G>T		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																																
ERCC3	2071	MSKCC	GRCh37	2	128030508	128030508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	181	676	1	ENST00000285398.2:c.1760G>T	p.Gly587Val	p.G587V	ENST00000285398	NM_000122.1	587	gGg/gTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729974	30729974	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs397516840		P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	151	336	0	ENST00000359013.4:c.1570G>T	p.Glu524Ter	p.E524*	ENST00000359013	NM_001024847.2	524	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174366	112174366	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	145	381	0	ENST00000257430.4:c.3075A>G	p.Ile1025Met	p.I1025M	ENST00000257430	NM_000038.5	1025	atA/atG																																																																															
HGF	3082	MSKCC	GRCh37	7	81372753	81372753	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	151	521	0	ENST00000222390.5:c.781C>A	p.Arg261Ser	p.R261S	ENST00000222390	NM_000601.4	261	Cgc/Agc																																																																															
NF1	4763	MSKCC	GRCh37	17	29553649	29553649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	295	483	0	ENST00000358273.4:c.2198C>T	p.Pro733Leu	p.P733L	ENST00000358273	NM_001042492.2	733	cCc/cTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123701	11123701	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	161	540	0	ENST00000344626.4:c.2351G>T	p.Gly784Val	p.G784V	ENST00000344626	NM_003072.3	784	gGg/gTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41525905	41525905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	159	445	3	ENST00000263253.7:c.1180G>T	p.Ala394Ser	p.A394S	ENST00000263253	NM_001429.3	394	Gca/Tca																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032560	47032560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	174	695	0	ENST00000329236.7:c.235G>A	p.Ala79Thr	p.A79T	ENST00000329236	NM_001204466.1	79	Gca/Aca																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044892	47044892	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	210	732	1	ENST00000329236.7:c.1984G>T	p.Glu662Ter	p.E662*	ENST00000329236	NM_001204466.1	662	Gag/Tag																																																																															
ARAF	369	MSKCC	GRCh37	X	47422704	47422704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	206	708	0	ENST00000377045.4:c.176G>T	p.Cys59Phe	p.C59F	ENST00000377045	NM_001654.4	59	tGt/tTt																																																																															
ATRX	546	MSKCC	GRCh37	X	76890099	76890099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	210	687	0	ENST00000373344.5:c.4795G>A	p.Gly1599Ser	p.G1599S	ENST00000373344	NM_000489.3	1599	Ggt/Agt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37090083	37090083	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	173	314	0	ENST00000231790.2:c.1972C>G	p.Leu658Val	p.L658V	ENST00000231790	NM_000249.3	658	Ctt/Gtt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936069	49936069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1145	222	393	0	ENST00000296474.3:c.1601G>A	p.Gly534Glu	p.G534E	ENST00000296474	NM_002447.2	534	gGg/gAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0007092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	185	426	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0007092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	699	499	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112174784	112174784	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	216	311	0	ENST00000257430.4:c.3493A>T	p.Lys1165Ter	p.K1165*	ENST00000257430	NM_000038.5	1165	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0007092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	94	258	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298126	15298126	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201118034		P-0007092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	373	393	1	ENST00000263388.2:c.1630C>T	p.Arg544Cys	p.R544C	ENST00000263388	NM_000435.2	544	Cgc/Tgc																																																																															
ERG	2078	MSKCC	GRCh37	21	39775464	39775464	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1384526747		P-0007092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	479	358	1	ENST00000288319.7:c.556G>A	p.Asp186Asn	p.D186N	ENST00000288319	NM_182918.3	186	Gac/Aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACCCCC			P-0010333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	487	264	0	ENST00000275493.2:c.2311_2319dup	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	gac/gACAACCCCCac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884464	151884464	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	82	474	0	ENST00000262189.6:c.4891A>T	p.Asn1631Tyr	p.N1631Y	ENST00000262189	NM_170606.2	1631	Aat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	63	208	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0010363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	43	127	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0010363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	73	243	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0010363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	65	229	0	ENST00000257430.4:c.4391_4394del	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982141	93982141	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0010363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	89	294	0	ENST00000369303.4:c.1325-1G>T		p.X442_splice	ENST00000369303	NM_004440.3	442																																																																																
SOX9	6662	MSKCC	GRCh37	17	70119823	70119823	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	99	302	0	ENST00000245479.2:c.825del	p.Ile275MetfsTer4	p.I275Mfs*4	ENST00000245479	NM_000346.3	275	atC/at																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0012251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	2314	550	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0012251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	220	513	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197791	66197791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	96	728	0	ENST00000273854.3:c.2908G>A	p.Val970Ile	p.V970I	ENST00000273854	NM_004439.5	970	Gta/Ata																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519934		P-0014932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	180	453	0	ENST00000263967.3:c.333G>C	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaC																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40456400	40456400	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	130	615	0	ENST00000345506.4:c.1210G>C	p.Glu404Gln	p.E404Q	ENST00000345506	NM_003152.3	404	Gag/Cag																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78519452	78519452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	129	601	0	ENST00000306801.3:c.23C>T	p.Ser8Leu	p.S8L	ENST00000306801	NM_020761.2	8	tCg/tTg																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881512	111881530	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGCCCCACCTGCCAGCC	CTGGCCCCACCTGCCAGCC	-			P-0014932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	81	495	0	ENST00000393256.3:c.197_215del	p.Pro66LeufsTer12	p.P66Lfs*12	ENST00000393256	NM_006538.4	64	CTGGCCCCACCTGCCAGCCct/ct																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198265052	198265052	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	104	381	0	ENST00000335508.6:c.2825A>G	p.Asn942Ser	p.N942S	ENST00000335508	NM_012433.2	942	aAc/aGc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39708783	39708783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	101	414	0	ENST00000361337.2:c.394G>T	p.Asp132Tyr	p.D132Y	ENST00000361337	NM_003286.2	132	Gat/Tat																																																																															
AR	367	MSKCC	GRCh37	X	66863103	66863103	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	140	260	0	ENST00000374690.3:c.1622A>T	p.Glu541Val	p.E541V	ENST00000374690	NM_000044.3	541	gAg/gTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242470	+	missense_variant	Missense_Mutation	ONP	GGAATT	GGAATT	AATTCC			P-0014932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	804	677	0	ENST00000275493.2:c.2235_2240inv	p.Glu746_Leu747delinsIlePro	p.E746_L747delinsIP	ENST00000275493	NM_005228.3	745	aaGGAATTa/aaAATTCCa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0015665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	188	517	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	111	331	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057520000		P-0015665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	644	843	0	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																																																															
ALK	238	MSKCC	GRCh37	2	30143044	30143044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	339	833	0	ENST00000389048.3:c.482C>T	p.Ala161Val	p.A161V	ENST00000389048	NM_004304.4	161	gCg/gTg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26970485	26970485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	62	299	0	ENST00000381527.3:c.854G>A	p.Arg285Lys	p.R285K	ENST00000381527	NM_001260.1	285	aGa/aAa																																																																															
B2M	567	MSKCC	GRCh37	15	45007620	45007620	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0015665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	29	205	0	ENST00000558401.1:c.68del		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
CD276	80381	MSKCC	GRCh37	15	73996194	73996194	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759425133		P-0015665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	200	610	0	ENST00000318443.5:c.928C>T	p.Arg310Cys	p.R310C	ENST00000318443	NM_001024736.1	310	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238989	5238989	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1294241597		P-0015665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	273	620	2	ENST00000357368.4:c.1790G>A	p.Arg597His	p.R597H	ENST00000357368	NM_002850.3	597	cGc/cAc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001359	150001359	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747544430		P-0015665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	72	625	1	ENST00000253339.5:c.2245C>T	p.His749Tyr	p.H749Y	ENST00000253339		749	Cat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0017938-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1416	103	707	2	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465558	8465558	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1400992051		P-0017938-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			211	12	733	0	ENST00000356435.5:c.3622G>A	p.Asp1208Asn	p.D1208N	ENST00000356435		1208	Gac/Aac																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576257	88576257	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017938-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			637	43	340	0	ENST00000360948.2:c.1416T>A	p.Ser472Arg	p.S472R	ENST00000360948	NM_001012338.2	472	agT/agA																																																																															
CTCF	10664	MSKCC	GRCh37	16	67662352	67662352	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017938-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	89	588	0	ENST00000264010.4:c.1598G>C	p.Arg533Pro	p.R533P	ENST00000264010	NM_006565.3	533	cGc/cCc																																																																															
NF1	4763	MSKCC	GRCh37	17	29677331	29677332	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017938-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			329	58	400	0	ENST00000358273.4:c.7453dup	p.Tyr2485LeufsTer2	p.Y2485Lfs*2	ENST00000358273	NM_001042492.2	2484	-/T																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085729	16085729	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017938-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1263	67	727	0	ENST00000281043.3:c.905G>T	p.Arg302Leu	p.R302L	ENST00000281043	NM_005378.4	302	cGt/cTt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61717882	61717883	+	missense_variant	Missense_Mutation	DNP	GT	GT	AA			P-0017938-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	63	696	1	ENST00000401558.2:c.1916_1917delinsTT	p.Tyr639Phe	p.Y639F	ENST00000401558	NM_003400.3	639	tAC/tTT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187525724	187525724	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017938-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	47	314	0	ENST00000441802.2:c.10355A>C	p.Asn3452Thr	p.N3452T	ENST00000441802	NM_005245.3	3452	aAt/aCt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86686619	86686619	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0017938-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			194	20	497	0	ENST00000274376.6:c.3063C>G	p.His1021Gln	p.H1021Q	ENST00000274376	NM_002890.2	1021	caC/caG																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128347866	128347866	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017938-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			898	55	631	0	ENST00000265960.3:c.639G>C	p.Gln213His	p.Q213H	ENST00000265960	NM_001006617.1	213	caG/caC																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932465	39932465	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017938-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	65	712	0	ENST00000378444.4:c.2134G>T	p.Glu712Ter	p.E712*	ENST00000378444	NM_001123385.1	712	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0018300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	134	776	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143350346	143350346	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1483862322		P-0018300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	20	287	0	ENST00000262992.4:c.116C>T	p.Pro39Leu	p.P39L	ENST00000262992	NM_001101669.1	39	cCg/cTg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287568	33287568	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	83	563	0	ENST00000374542.5:c.1529C>G	p.Pro510Arg	p.P510R	ENST00000374542	NM_001141970.1	510	cCt/cGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151841842	151841842	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	64	331	0	ENST00000262189.6:c.14299del	p.Thr4767LeufsTer43	p.T4767Lfs*43	ENST00000262189	NM_170606.2	4767	Act/ct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0018916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1235	50	542	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs483352695		P-0018916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	119	594	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0019070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	197	827	1	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
KDR	3791	MSKCC	GRCh37	4	55956183	55956183	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	234	854	0	ENST00000263923.4:c.3132C>G	p.Ile1044Met	p.I1044M	ENST00000263923	NM_002253.2	1044	atC/atG																																																																															
TET2	54790	MSKCC	GRCh37	4	106197257	106197257	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	52	374	0	ENST00000380013.4:c.5590G>C	p.Val1864Leu	p.V1864L	ENST00000380013	NM_001127208.2	1864	Gtg/Ctg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0019303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	180	783	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0019303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	184	673	0	ENST00000269305.4:c.782+1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48604749	48604749	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	95	730	0	ENST00000342988.3:c.1571G>A	p.Trp524Ter	p.W524*	ENST00000342988	NM_005359.5	524	tGg/tAg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120497	94120497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	37	478	0	ENST00000369303.4:c.554C>T	p.Ala185Val	p.A185V	ENST00000369303	NM_004440.3	185	gCc/gTc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442569	52442569	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1298276806		P-0020619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	22	696	1	ENST00000460680.1:c.176G>A	p.Arg59Gln	p.R59Q	ENST00000460680	NM_004656.3	59	cGg/cAg																																																																															
CDH1	999	MSKCC	GRCh37	16	68835794	68835794	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0020619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	25	728	0	ENST00000261769.5:c.385C>T	p.Gln129Ter	p.Q129*	ENST00000261769	NM_004360.3	129	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49449082	49449082	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	26	898	0	ENST00000301067.7:c.26A>G	p.Glu9Gly	p.E9G	ENST00000301067	NM_003482.3	9	gAg/gGg																																																																															
MGA	23269	MSKCC	GRCh37	15	42032250	42032250	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0020619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	19	835	1	ENST00000219905.7:c.4435-1G>A		p.X1479_splice	ENST00000219905	NM_001164273.1	1479																																																																																
TP53BP1	7158	MSKCC	GRCh37	15	43713236	43713236	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	13	1071	0	ENST00000382044.4:c.4237A>G	p.Thr1413Ala	p.T1413A	ENST00000382044	NM_001141980.1	1413	Acc/Gcc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0021839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	284	743	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0021839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	15	752	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64571891	64571891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1117	88	1041	0	ENST00000337652.1:c.1763C>T	p.Ser588Leu	p.S588L	ENST00000337652	NM_130803.2	588	tCg/tTg																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47604179	47604183	+	frameshift_variant	Frame_Shift_Del	DEL	GTTAT	GTTAT	C			P-0021839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	127	646	0	ENST00000263735.4:c.518_522delinsC	p.Arg173ProfsTer36	p.R173Pfs*36	ENST00000263735	NM_002354.2	173	cGTTAT/cC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0023456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	549	769	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0023456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	385	797	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044550	47044550	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	149	458	0	ENST00000329236.7:c.1813G>T	p.Glu605Ter	p.E605*	ENST00000329236	NM_001204466.1	605	Gag/Tag																																																																															
STK40	83931	MSKCC	GRCh37	1	36820846	36820846	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs770651057		P-0023456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	349	683	2	ENST00000373129.3:c.531C>G	p.Ile177Met	p.I177M	ENST00000373129	NM_032017.1	177	atC/atG																																																																															
BIRC3	330	MSKCC	GRCh37	11	102207775	102207775	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	326	612	0	ENST00000263464.3:c.1757G>C	p.Arg586Thr	p.R586T	ENST00000263464	NM_001165.4	586	aGa/aCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0024556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	155	694	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	178	603	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0024556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	142	337	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563132	21563132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	174	452	0	ENST00000382592.4:c.787G>A	p.Glu263Lys	p.E263K	ENST00000382592	NM_014572.2	263	Gaa/Aaa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31385104	31385104	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs757998715		P-0024556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	136	555	0	ENST00000328111.2:c.1489C>T	p.Arg497Trp	p.R497W	ENST00000328111	NM_006892.3	497	Cgg/Tgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151864302	151864302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	204	579	0	ENST00000262189.6:c.9679C>T	p.Pro3227Ser	p.P3227S	ENST00000262189	NM_170606.2	3227	Cca/Tca																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55153709	55153709	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0025040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	61	474	0	ENST00000257290.5:c.2674+1G>T		p.X892_splice	ENST00000257290	NM_006206.4	892																																																																																
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0025573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			177	394	603	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612352	1612352	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748738693		P-0025573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			889	90	804	0	ENST00000344749.5:c.1667G>A	p.Arg556Gln	p.R556Q	ENST00000344749	NM_001136139.2	556	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378663	25378663	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			276	80	395	0	ENST00000256078.4:c.335T>C	p.Val112Ala	p.V112A	ENST00000256078	NM_033360.2	112	gTc/gCc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431269	49431270	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			138	234	502	0	ENST00000301067.7:c.9869dup	p.Ala3292CysfsTer9	p.A3292Cfs*9	ENST00000301067	NM_003482.3	3290	ggc/ggGc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900792	3900792	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			142	537	534	0	ENST00000262367.5:c.304C>T	p.Gln102Ter	p.Q102*	ENST00000262367	NM_004380.2	102	Cag/Tag																																																																															
ATR	545	MSKCC	GRCh37	3	142242884	142242884	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs868817417		P-0025573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			745	262	496	0	ENST00000350721.4:c.4103G>T	p.Arg1368Leu	p.R1368L	ENST00000350721	NM_001184.3	1368	cGa/cTa																																																																															
LYN	4067	MSKCC	GRCh37	8	56854511	56854511	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			249	222	417	0	ENST00000519728.1:c.93T>G	p.Ile31Met	p.I31M	ENST00000519728	NM_002350.3	31	atT/atG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0026022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	488	506	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0026022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	294	589	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873020	136873020	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147198552		P-0026022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	47	331	1	ENST00000241393.3:c.478G>A	p.Val160Ile	p.V160I	ENST00000241393	NM_003467.2	160	Gtc/Atc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883184	37883186	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0026022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	59	595	0	ENST00000269571.5:c.3092_3094del	p.Phe1031del	p.F1031del	ENST00000269571		1029	ggCTTc/ggc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940366	49940366	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770141981		P-0026022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	80	567	0	ENST00000296474.3:c.677C>T	p.Ser226Leu	p.S226L	ENST00000296474	NM_002447.2	226	tCg/tTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0027199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	276	619	2	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0027199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	551	552	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	473	550	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CCND3	896	MSKCC	GRCh37	6	41908238	41908238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	198	661	1	ENST00000372991.4:c.284G>A	p.Arg95Gln	p.R95Q	ENST00000372991	NM_001760.3	95	cGa/cAa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459558	50459558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	99	292	0	ENST00000331340.3:c.847C>A	p.Leu283Ile	p.L283I	ENST00000331340	NM_006060.4	283	Ctt/Att																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647436	3647436	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377148341		P-0027199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1376	168	547	0	ENST00000294008.3:c.1627G>A	p.Glu543Lys	p.E543K	ENST00000294008	NM_032444.2	543	Gag/Aag																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363282	40363282	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	160	462	0	ENST00000397332.2:c.947A>C	p.His316Pro	p.H316P	ENST00000397332	NM_001033082.2	316	cAc/cCc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95574711	95574711	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	109	424	0	ENST00000343455.3:c.2386G>C	p.Glu796Gln	p.E796Q	ENST00000343455	NM_177438.2	796	Gaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0027257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	58	476	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346419	152346419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	29	341	0	ENST00000359321.1:c.151G>A	p.Gly51Arg	p.G51R	ENST00000359321	NM_005431.1	51	Gga/Aga																																																																															
NF1	4763	MSKCC	GRCh37	17	29554566	29554566	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	52	316	1	ENST00000358273.4:c.2351G>A	p.Trp784Ter	p.W784*	ENST00000358273	NM_001042492.2	784	tGg/tAg																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1325346	1325346	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	40	454	0	ENST00000381566.1:c.329G>T	p.Ser110Ile	p.S110I	ENST00000381566		110	aGt/aTt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	66	637	0	ENST00000346208.3:c.1003dup	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0027833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	61	422	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0027833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	55	474	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133889	41133889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	39	363	0	ENST00000379561.5:c.1739C>T	p.Ser580Phe	p.S580F	ENST00000379561	NM_002015.3	580	tCc/tTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	46	346	0	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518442	204518442	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140091735		P-0027833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	36	375	0	ENST00000367182.3:c.1105C>T	p.Pro369Ser	p.P369S	ENST00000367182	NM_001278516.1	369	Cct/Tct																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151876977	151876977	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	48	367	1	ENST00000262189.6:c.7384C>T	p.Gln2462Ter	p.Q2462*	ENST00000262189	NM_170606.2	2462	Cag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29585383	29585383	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131691072		P-0027833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	38	502	0	ENST00000358273.4:c.4195C>T	p.Gln1399Ter	p.Q1399*	ENST00000358273	NM_001042492.2	1399	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431937	49431937	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	85	811	0	ENST00000301067.7:c.9202G>T	p.Glu3068Ter	p.E3068*	ENST00000301067	NM_003482.3	3068	Gag/Tag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134301	2134301	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397514997		P-0027833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	57	781	0	ENST00000219476.3:c.4078G>A	p.Glu1360Lys	p.E1360K	ENST00000219476	NM_000548.3	1360	Gag/Aag																																																																															
CARM1	10498	MSKCC	GRCh37	19	11019846	11019846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	65	636	0	ENST00000327064.4:c.521G>A	p.Arg174His	p.R174H	ENST00000327064	NM_199141.1	174	cGc/cAc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244997	46244997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs868082376		P-0028081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	301	575	1	ENST00000334344.6:c.3091C>T	p.Gln1031Ter	p.Q1031*	ENST00000334344	NM_152641.2	1031	Cag/Tag																																																																															
CDH1	999	MSKCC	GRCh37	16	68771344	68771344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	103	263	0	ENST00000261769.5:c.26C>T	p.Ser9Leu	p.S9L	ENST00000261769	NM_004360.3	9	tCg/tTg																																																																															
RET	5979	MSKCC	GRCh37	10	43609036	43609036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	179	567	0	ENST00000355710.3:c.1792G>A	p.Glu598Lys	p.E598K	ENST00000355710	NM_020975.4	598	Gag/Aag																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50479261	50479261	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	242	421	1	ENST00000394963.4:c.110del	p.Pro37LeufsTer33	p.P37Lfs*33	ENST00000394963	NM_003076.4	37	Cct/ct																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346307	89346307	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1259405084		P-0028081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	150	352	0	ENST00000301030.4:c.6643G>A	p.Val2215Met	p.V2215M	ENST00000301030	NM_001256183.1	2215	Gtg/Atg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350309	89350309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	210	677	0	ENST00000301030.4:c.2641G>A	p.Val881Met	p.V881M	ENST00000301030	NM_001256183.1	881	Gtg/Atg																																																																															
NF1	4763	MSKCC	GRCh37	17	29556332	29556332	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	148	409	0	ENST00000358273.4:c.2699C>G	p.Ser900Cys	p.S900C	ENST00000358273	NM_001042492.2	900	tCc/tGc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180553	56180553	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	152	367	0	ENST00000399503.3:c.3882G>C	p.Glu1294Asp	p.E1294D	ENST00000399503	NM_005921.1	1294	gaG/gaC																																																																															
MET	4233	MSKCC	GRCh37	7	116395555	116395555	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	219	446	0	ENST00000397752.3:c.1848G>C	p.Glu616Asp	p.E616D	ENST00000397752	NM_000245.2	616	gaG/gaC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151896520	151896520	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	186	263	0	ENST00000262189.6:c.4117C>G	p.Leu1373Val	p.L1373V	ENST00000262189	NM_170606.2	1373	Cta/Gta																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0029225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	513	650	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176710828	176710828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587784177		P-0029225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	106	454	0	ENST00000439151.2:c.6050G>A	p.Arg2017Gln	p.R2017Q	ENST00000439151	NM_022455.4	2017	cGg/cAg																																																																															
CRKL	1399	MSKCC	GRCh37	22	21304066	21304066	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1444326760		P-0029225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	205	668	0	ENST00000354336.3:c.845G>A	p.Arg282His	p.R282H	ENST00000354336	NM_005207.3	282	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829569	72829569	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	151	594	0	ENST00000268489.5:c.7012C>T	p.Gln2338Ter	p.Q2338*	ENST00000268489	NM_006885.3	2338	Cag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130286	11130287	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCCT			P-0029225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	153	571	2	ENST00000344626.4:c.2526_2530dup	p.Phe844TrpfsTer16	p.F844Wfs*16	ENST00000344626	NM_003072.3	842	cgg/cgGGCCTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638440	176638440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	192	673	2	ENST00000439151.2:c.3040G>A	p.Asp1014Asn	p.D1014N	ENST00000439151	NM_022455.4	1014	Gac/Aac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039864	47039865	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	423	799	1	ENST00000329236.7:c.975dup	p.Ser326GlnfsTer39	p.S326Qfs*39	ENST00000329236	NM_001204466.1	325	gcc/gCcc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0030797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	62	626	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0030797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	100	533	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0030797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	96	566	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48954299	48954299	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T	rs1395304450		P-0032028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	19	349	0	ENST00000267163.4:c.1422-2A>T		p.X474_splice	ENST00000267163	NM_000321.2	474																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5274356	5274356	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0032028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	11	410	0	ENST00000357368.4:c.92-1G>T		p.X31_splice	ENST00000357368	NM_002850.3	31																																																																																
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0032136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	14	674	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0032136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	82	575	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449727	8449727	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs772305581		P-0032136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	32	607	0	ENST00000356435.5:c.3986C>T	p.Pro1329Leu	p.P1329L	ENST00000356435		1329	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577052	7577053	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	131	813	0	ENST00000269305.4:c.885dup	p.His296SerfsTer10	p.H296Sfs*10	ENST00000269305	NM_001126112.2	295	-/T																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99156092	99156092	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1247349502		P-0032136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	30	674	0	ENST00000074304.5:c.772G>A	p.Val258Met	p.V258M	ENST00000074304	NM_001134224.1	258	Gtg/Atg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99181157	99181157	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1236305078		P-0032136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	30	720	0	ENST00000074304.5:c.2098G>A	p.Asp700Asn	p.D700N	ENST00000074304	NM_001134224.1	700	Gac/Aac																																																																															
MDC1	9656	MSKCC	GRCh37	6	30668370	30668370	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	57	574	0	ENST00000376406.3:c.6142C>G	p.His2048Asp	p.H2048D	ENST00000376406	NM_014641.2	2048	Cat/Gat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0032254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	174	538	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29653028	29653028	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756450772		P-0032254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	119	412	2	ENST00000358273.4:c.5026G>A	p.Ala1676Thr	p.A1676T	ENST00000358273	NM_001042492.2	1676	Gca/Aca																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048787	180048787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	197	770	2	ENST00000261937.6:c.1775G>A	p.Arg592His	p.R592H	ENST00000261937	NM_182925.4	592	cGc/cAc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201980416	201980417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	148	529	0	ENST00000359651.3:c.154dup	p.Glu52GlyfsTer40	p.E52Gfs*40	ENST00000359651		51	ttg/ttGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0032267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	231	646	7	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0032267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	92	455	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0032267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	181	430	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0032267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	66	327	1	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627398	37627398	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	142	522	3	ENST00000447079.4:c.1313A>T	p.Lys438Met	p.K438M	ENST00000447079	NM_015083.1	438	aAg/aTg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2213964	2213964	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	121	544	0	ENST00000326181.6:c.43G>T	p.Gly15Trp	p.G15W	ENST00000326181	NM_032271.2	15	Ggg/Tgg																																																																															
SDHA	6389	MSKCC	GRCh37	5	231041	231041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	111	532	0	ENST00000264932.6:c.821G>A	p.Gly274Asp	p.G274D	ENST00000264932	NM_004168.2	274	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	256	452	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0032274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	317	512	1	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109764	115109764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	188	666	0	ENST00000257566.3:c.2114C>T	p.Ser705Phe	p.S705F	ENST00000257566	NM_016569.3	705	tCc/tTc																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518660	204518660	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	163	294	0	ENST00000367182.3:c.1323G>C	p.Glu441Asp	p.E441D	ENST00000367182	NM_001278516.1	441	gaG/gaC																																																																															
MTOR	2475	MSKCC	GRCh37	1	11294250	11294250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	306	509	1	ENST00000361445.4:c.2281G>T	p.Val761Phe	p.V761F	ENST00000361445	NM_004958.3	761	Gtc/Ttc																																																																															
PGR	5241	MSKCC	GRCh37	11	100999756	100999756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	285	649	0	ENST00000325455.5:c.46G>T	p.Gly16Cys	p.G16C	ENST00000325455	NM_001202474.3	16	Ggc/Tgc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45864839	45864839	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	292	914	0	ENST00000391945.4:c.1180T>C	p.Phe394Leu	p.F394L	ENST00000391945	NM_000400.3	394	Ttc/Ctc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794846	242794846	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	220	628	0	ENST00000334409.5:c.363C>A	p.Tyr121Ter	p.Y121*	ENST00000334409	NM_005018.2	121	taC/taA																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185195135	185195135	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	75	236	0	ENST00000265026.3:c.2452G>C	p.Glu818Gln	p.E818Q	ENST00000265026	NM_004721.4	818	Gag/Cag																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730074	41730074	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs377167564		P-0032274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	215	437	0	ENST00000242208.4:c.455G>T	p.Arg152Leu	p.R152L	ENST00000242208	NM_002192.2	152	cGt/cTt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410571	63410571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	176	387	0	ENST00000330258.3:c.2596G>T	p.Val866Leu	p.V866L	ENST00000330258	NM_152424.3	866	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	189	836	0	ENST00000269305.4:c.434T>G	p.Leu145Arg	p.L145R	ENST00000269305	NM_001126112.2	145	cTg/cGg																																																																															
NF1	4763	MSKCC	GRCh37	17	29509596	29509596	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1064794273		P-0032286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	93	525	0	ENST00000358273.4:c.801G>A	p.Trp267Ter	p.W267*	ENST00000358273	NM_001042492.2	267	tgG/tgA																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111884997	111884997	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	77	518	0	ENST00000341259.2:c.998del	p.Gly333AlafsTer40	p.G333Afs*40	ENST00000341259	NM_005475.2	332	aGg/ag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645120	86645120	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1210180190		P-0032286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	54	294	0	ENST00000274376.6:c.1192C>T	p.Arg398Ter	p.R398*	ENST00000274376	NM_002890.2	398	Cga/Tga																																																																															
PGR	5241	MSKCC	GRCh37	11	100998283	100998283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	31	122	0	ENST00000325455.5:c.1519G>A	p.Ala507Thr	p.A507T	ENST00000325455	NM_001202474.3	507	Gcg/Acg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778591	3778591	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs370693698		P-0032286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	223	655	0	ENST00000262367.5:c.6457G>T	p.Gly2153Cys	p.G2153C	ENST00000262367	NM_004380.2	2153	Ggt/Tgt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965658	93965658	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751194338		P-0032286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	31	429	0	ENST00000369303.4:c.2270G>A	p.Arg757Lys	p.R757K	ENST00000369303	NM_004440.3	757	aGg/aAg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129345	152129345	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1362946000		P-0032286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	65	456	0	ENST00000206249.3:c.298C>G	p.Leu100Val	p.L100V	ENST00000206249	NM_000125.3	100	Ctc/Gtc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864418	162864418	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	33	406	0	ENST00000366898.1:c.95A>T	p.Lys32Met	p.K32M	ENST00000366898	NM_004562.2	32	aAg/aTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636815	8636815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	90	397	0	ENST00000356435.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000356435		32	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0032296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	104	756	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0032296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	46	648	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112174835	112174835	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0032296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	31	255	0	ENST00000257430.4:c.3544A>T	p.Lys1182Ter	p.K1182*	ENST00000257430	NM_000038.5	1182	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112154963	112154963	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660802		P-0032296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	99	711	1	ENST00000257430.4:c.1234C>T	p.Gln412Ter	p.Q412*	ENST00000257430	NM_000038.5	412	Cag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0032296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	150	951	0	ENST00000329236.7:c.1459+1G>A		p.X487_splice	ENST00000329236	NM_001204466.1	487																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48573642	48573642	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0032296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	25	459	0	ENST00000342988.3:c.226A>T	p.Arg76Ter	p.R76*	ENST00000342988	NM_005359.5	76	Aga/Tga																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730132	41730132	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	68	373	0	ENST00000242208.4:c.397A>G	p.Arg133Gly	p.R133G	ENST00000242208	NM_002192.2	133	Agg/Ggg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	65	304	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	171	479	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99440129	99440129	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	36	302	0	ENST00000268035.6:c.1101del	p.Asn368IlefsTer17	p.N368Ifs*17	ENST00000268035	NM_000875.3	366	cGg/cg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103755	47103756	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	108	492	0	ENST00000409792.3:c.6190_6191del	p.Asp2064ProfsTer8	p.D2064Pfs*8	ENST00000409792	NM_014159.6	2064	GAc/c																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31389135	31389135	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1165118132		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	48	467	2	ENST00000328111.2:c.2048G>A	p.Arg683His	p.R683H	ENST00000328111	NM_006892.3	683	cGc/cAc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	71	279	0	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106536164	106536164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	48	297	0	ENST00000369096.4:c.131C>T	p.Ala44Val	p.A44V	ENST00000369096	NM_001198.3	44	gCg/gTg																																																																															
AXL	558	MSKCC	GRCh37	19	41744385	41744385	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	28	454	0	ENST00000301178.4:c.1010del	p.Pro337LeufsTer29	p.P337Lfs*29	ENST00000301178	NM_021913.4	335	ggC/gg																																																																															
TP63	8626	MSKCC	GRCh37	3	189526151	189526151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	75	455	0	ENST00000264731.3:c.415G>A	p.Ala139Thr	p.A139T	ENST00000264731	NM_003722.4	139	Gcg/Acg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968266	2968266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	45	562	0	ENST00000396946.4:c.1720G>A	p.Val574Ile	p.V574I	ENST00000396946	NM_032415.4	574	Gtc/Atc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434791	99434791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	80	466	0	ENST00000268035.6:c.878C>T	p.Ser293Phe	p.S293F	ENST00000268035	NM_000875.3	293	tCc/tTc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505418	25505418	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	54	451	0	ENST00000264709.3:c.340del	p.Ala114ProfsTer48	p.A114Pfs*48	ENST00000264709	NM_175629.2	114	Gcc/cc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161939	47161939	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	49	339	0	ENST00000409792.3:c.4187del	p.Asn1396MetfsTer16	p.N1396Mfs*16	ENST00000409792	NM_014159.6	1396	aAt/at																																																																															
KIT	3815	MSKCC	GRCh37	4	55604628	55604628	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs139000082		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	97	433	0	ENST00000288135.5:c.2836C>T	p.Arg946Ter	p.R946*	ENST00000288135	NM_000222.2	946	Cga/Tga																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119582302	119582302	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	50	356	1	ENST00000316626.5:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000316626		367	Cga/Tga																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138915	64138915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	77	354	0	ENST00000334205.4:c.2287del	p.Arg763AlafsTer21	p.R763Afs*21	ENST00000334205	NM_003942.2	761	gCc/gc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98232137	98232137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1382474804		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	87	286	0	ENST00000331920.6:c.1805G>A	p.Arg602Gln	p.R602Q	ENST00000331920	NM_000264.3	602	cGa/cAa																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020769	37020769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	43	392	0	ENST00000358127.4:c.76del	p.Val26PhefsTer3	p.V26Ffs*3	ENST00000358127	NM_001280556.1	26	Gtt/tt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987027	36987027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	103	373	0	ENST00000354822.5:c.662G>A	p.Arg221His	p.R221H	ENST00000354822	NM_001079668.2	221	cGc/cAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933013	39933013	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	140	298	0	ENST00000378444.4:c.1586del	p.Asn529ThrfsTer60	p.N529Tfs*60	ENST00000378444	NM_001123385.1	529	aAc/ac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610567	10610567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	125	632	0	ENST00000171111.5:c.143G>A	p.Gly48Asp	p.G48D	ENST00000171111	NM_203500.1	48	gGc/gAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405201	139405201	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767886377		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	50	566	1	ENST00000277541.6:c.2644G>A	p.Ala882Thr	p.A882T	ENST00000277541	NM_017617.3	882	Gca/Aca																																																																															
LATS2	26524	MSKCC	GRCh37	13	21555686	21555686	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1194403560		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	54	505	0	ENST00000382592.4:c.2584C>T	p.Arg862Trp	p.R862W	ENST00000382592	NM_014572.2	862	Cgg/Tgg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432067	121432067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	162	559	0	ENST00000257555.6:c.814C>T	p.Arg272Cys	p.R272C	ENST00000257555		272	Cgc/Tgc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857680	9857680	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1303700994		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	89	381	0	ENST00000330684.3:c.3721C>T	p.Arg1241Trp	p.R1241W	ENST00000330684	NM_001134407.1	1241	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952006	178952006	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	35	338	0	ENST00000263967.3:c.3061T>A	p.Tyr1021Asn	p.Y1021N	ENST00000263967	NM_006218.2	1021	Tac/Aac																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29083913	29083913	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs544216926		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	14	142	0	ENST00000328354.6:c.1604G>A	p.Arg535His	p.R535H	ENST00000328354	NM_007194.3	535	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434074	49434074	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	38	452	1	ENST00000301067.7:c.7479del	p.Phe2494SerfsTer49	p.F2494Sfs*49	ENST00000301067	NM_003482.3	2493	ggG/gg																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793054	33793056	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs747773004		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	61	199	0	ENST00000498907.2:c.265_267del	p.Glu89del	p.E89del	ENST00000498907	NM_004364.3	89	GAG/-																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	71	455	2	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
FOXL2	668	MSKCC	GRCh37	3	138664900	138664900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	12	144	0	ENST00000330315.3:c.665C>T	p.Ala222Val	p.A222V	ENST00000330315	NM_023067.3	222	gCa/gTa																																																																															
RXRA	6256	MSKCC	GRCh37	9	137309069	137309069	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756234164		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	69	633	1	ENST00000481739.1:c.676G>A	p.Ala226Thr	p.A226T	ENST00000481739	NM_002957.4	226	Gcc/Acc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426973	49426973	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	135	413	1	ENST00000301067.7:c.11515del	p.Gln3839SerfsTer42	p.Q3839Sfs*42	ENST00000301067	NM_003482.3	3839	Cag/ag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662637	227662637	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755496379		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	86	493	2	ENST00000305123.5:c.818C>T	p.Ser273Leu	p.S273L	ENST00000305123	NM_005544.2	273	tCg/tTg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430482	181430482	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	40	408	1	ENST00000325404.1:c.337del	p.Arg113GlyfsTer8	p.R113Gfs*8	ENST00000325404	NM_003106.3	112	Ccc/cc																																																																															
TET2	54790	MSKCC	GRCh37	4	106157191	106157191	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	67	365	0	ENST00000380013.4:c.2092G>T	p.Val698Leu	p.V698L	ENST00000380013	NM_001127208.2	698	Gtg/Ttg																																																																															
CENPA	1058	MSKCC	GRCh37	2	27015053	27015053	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151098324		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	58	331	1	ENST00000335756.4:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000335756	NM_001809.3	52	cGa/cAa																																																																															
INHA	3623	MSKCC	GRCh37	2	220437222	220437223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1286117855		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	58	623	0	ENST00000243786.2:c.132dup	p.Ala45ArgfsTer29	p.A45Rfs*29	ENST00000243786	NM_002191.3	42	-/C																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100072	27100072	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	44	510	0	ENST00000324856.7:c.3868A>G	p.Thr1290Ala	p.T1290A	ENST00000324856	NM_006015.4	1290	Acg/Gcg																																																																															
FH	2271	MSKCC	GRCh37	1	241661204	241661204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	41	513	0	ENST00000366560.3:c.1457C>T	p.Ala486Val	p.A486V	ENST00000366560	NM_000143.3	486	gCt/gTt																																																																															
RET	5979	MSKCC	GRCh37	10	43620336	43620336	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs368550200		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	26	321	0	ENST00000355710.3:c.2945G>T	p.Arg982Leu	p.R982L	ENST00000355710	NM_020975.4	982	cGc/cTc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63700116	63700117	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	24	182	0	ENST00000279873.7:c.451_452insA	p.Leu151HisfsTer47	p.L151Hfs*47	ENST00000279873	NM_032199.2	151	cta/cAta																																																																															
KDM5A	5927	MSKCC	GRCh37	12	419129	419129	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	58	230	0	ENST00000399788.2:c.3218T>C	p.Val1073Ala	p.V1073A	ENST00000399788	NM_001042603.1	1073	gTg/gCg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230592	46230592	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs762692646		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	48	423	0	ENST00000334344.6:c.841A>G	p.Ile281Val	p.I281V	ENST00000334344	NM_152641.2	281	Att/Gtt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562215	21562215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	148	708	2	ENST00000382592.4:c.1704G>T	p.Lys568Asn	p.K568N	ENST00000382592	NM_014572.2	568	aaG/aaT																																																																															
CDK8	1024	MSKCC	GRCh37	13	26923282	26923282	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	30	326	0	ENST00000381527.3:c.278T>G	p.Val93Gly	p.V93G	ENST00000381527	NM_001260.1	93	gTg/gGg																																																																															
BLM	641	MSKCC	GRCh37	15	91347433	91347433	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	67	302	0	ENST00000355112.3:c.3600del	p.Lys1200AsnfsTer5	p.K1200Nfs*5	ENST00000355112	NM_000057.2	1199	Aaa/aa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346712	89346712	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs778852816		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	41	355	1	ENST00000301030.4:c.6238G>T	p.Ala2080Ser	p.A2080S	ENST00000301030	NM_001256183.1	2080	Gcc/Tcc																																																																															
RARA	5914	MSKCC	GRCh37	17	38504610	38504610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	42	544	2	ENST00000254066.5:c.221G>T	p.Ser74Ile	p.S74I	ENST00000254066	NM_000964.3	74	aGc/aTc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78796099	78796099	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	54	299	0	ENST00000306801.3:c.991+1del		p.R330fs	ENST00000306801	NM_020761.2	330	cGg/cg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599916	10599916	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs946921406		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	88	538	0	ENST00000171111.5:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000171111	NM_203500.1	554	Cga/Tga																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353843	15353843	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1325249458		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	62	402	0	ENST00000263377.2:c.3037C>T	p.Pro1013Ser	p.P1013S	ENST00000263377	NM_058243.2	1013	Cca/Tca																																																																															
UPF1	5976	MSKCC	GRCh37	19	18961573	18961573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	41	444	0	ENST00000262803.5:c.706C>T	p.Arg236Cys	p.R236C	ENST00000262803	NM_002911.3	236	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223827	36223827	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	132	640	0	ENST00000222270.7:c.6377A>G	p.Asp2126Gly	p.D2126G	ENST00000222270	NM_014727.1	2126	gAt/gGt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224183	36224183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	48	526	0	ENST00000222270.7:c.6733G>A	p.Val2245Met	p.V2245M	ENST00000222270	NM_014727.1	2245	Gtg/Atg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867026	45867026	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751177434		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	33	411	0	ENST00000391945.4:c.1093G>A	p.Val365Met	p.V365M	ENST00000391945	NM_000400.3	365	Gtg/Atg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085884	16085884	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	78	360	1	ENST00000281043.3:c.1060G>T	p.Ala354Ser	p.A354S	ENST00000281043	NM_005378.4	354	Gcg/Tcg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46602969	46602969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs574490008		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	35	526	1	ENST00000263734.3:c.1027G>A	p.Val343Ile	p.V343I	ENST00000263734	NM_001430.4	343	Gtc/Atc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182159	99182159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	107	421	0	ENST00000074304.5:c.2224G>A	p.Val742Met	p.V742M	ENST00000074304	NM_001134224.1	742	Gtg/Atg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39728874	39728874	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	37	211	0	ENST00000361337.2:c.1154A>T	p.Asn385Ile	p.N385I	ENST00000361337	NM_003286.2	385	aAc/aTc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37090468	37090468	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	25	292	0	ENST00000231790.2:c.2063A>C	p.Lys688Thr	p.K688T	ENST00000231790	NM_000249.3	688	aAg/aCg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933163	49933163	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200766923		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	32	375	1	ENST00000296474.3:c.2947C>T	p.Arg983Trp	p.R983W	ENST00000296474	NM_002447.2	983	Cgg/Tgg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480435	89480435	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	86	352	0	ENST00000336596.2:c.2272T>G	p.Leu758Val	p.L758V	ENST00000336596	NM_005233.5	758	Ttg/Gtg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134825367	134825367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	96	312	0	ENST00000398015.3:c.883G>A	p.Ala295Thr	p.A295T	ENST00000398015	NM_004441.4	295	Gca/Aca																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182683447	182683447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	80	357	0	ENST00000292782.4:c.98del	p.Asn33MetfsTer5	p.N33Mfs*5	ENST00000292782	NM_020640.2	33	aAt/at																																																																															
KDR	3791	MSKCC	GRCh37	4	55961772	55961772	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762955301		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	32	411	0	ENST00000263923.4:c.2789G>A	p.Ser930Asn	p.S930N	ENST00000263923	NM_002253.2	930	aGc/aAc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526249	31526249	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs541810066		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	74	640	0	ENST00000344624.3:c.791G>A	p.Arg264Gln	p.R264Q	ENST00000344624		264	cGg/cAg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970940	79970940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	31	383	0	ENST00000265081.6:c.1166G>A	p.Gly389Asp	p.G389D	ENST00000265081	NM_002439.4	389	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112174659	112174659	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	52	289	0	ENST00000257430.4:c.3371del	p.Asn1124MetfsTer2	p.N1124Mfs*2	ENST00000257430	NM_000038.5	1123	cAa/ca																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031981	26031982	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTA			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	51	353	0	ENST00000244661.2:c.305_307dup	p.Val102dup	p.V102dup	ENST00000244661	NM_003537.3	102	ggg/gTAGgg																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858200	27858200	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	86	424	0	ENST00000359303.2:c.371A>G	p.Asp124Gly	p.D124G	ENST00000359303	NM_003535.2	124	gAc/gGc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680383	30680383	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	64	470	0	ENST00000376406.3:c.1336C>T	p.Gln446Ter	p.Q446*	ENST00000376406	NM_014641.2	446	Caa/Taa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152201853	152201853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	42	304	0	ENST00000206249.3:c.707G>A	p.Ser236Asn	p.S236N	ENST00000206249	NM_000125.3	236	aGc/aAc																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194657	29194657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	112	584	0	ENST00000240100.2:c.1071del	p.Ala358ProfsTer65	p.A358Pfs*65	ENST00000240100	NM_001394.6	357	ccC/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231299	98231299	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1332668908		P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	81	608	0	ENST00000331920.6:c.1984G>A	p.Val662Ile	p.V662I	ENST00000331920	NM_000264.3	662	Gtc/Atc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53240773	53240773	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	50	292	0	ENST00000375401.3:c.1307T>C	p.Val436Ala	p.V436A	ENST00000375401	NM_004187.3	436	gTg/gCg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0032349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	116	346	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0032349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	120	532	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
FANCC	2176	MSKCC	GRCh37	9	97873861	97873861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	61	486	0	ENST00000289081.3:c.1213G>A	p.Glu405Lys	p.E405K	ENST00000289081	NM_000136.2	405	Gag/Aag																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480590	50480590	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	27	351	0	ENST00000394963.4:c.460G>C	p.Glu154Gln	p.E154Q	ENST00000394963	NM_003076.4	154	Gaa/Caa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	111	383	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115251169	115251169	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	67	489	0	ENST00000369535.4:c.557G>T	p.Cys186Phe	p.C186F	ENST00000369535	NM_002524.4	186	tGt/tTt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458814	120458814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	51	543	0	ENST00000256646.2:c.6531G>T	p.Gln2177His	p.Q2177H	ENST00000256646	NM_024408.3	2177	caG/caT																																																																															
WT1	7490	MSKCC	GRCh37	11	32456314	32456314	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	54	479	0	ENST00000332351.3:c.578C>A	p.Ala193Asp	p.A193D	ENST00000332351	NM_024426.4	193	gCc/gAc																																																																															
MGA	23269	MSKCC	GRCh37	15	41988640	41988640	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0033712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	50	449	0	ENST00000219905.7:c.1432A>T	p.Arg478Ter	p.R478*	ENST00000219905	NM_001164273.1	478	Aga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498431	89498431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	42	349	0	ENST00000336596.2:c.2403C>A	p.Phe801Leu	p.F801L	ENST00000336596	NM_005233.5	801	ttC/ttA																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851624	134851624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	53	430	0	ENST00000398015.3:c.1030C>T	p.Pro344Ser	p.P344S	ENST00000398015	NM_004441.4	344	Cct/Tct																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144078	55144078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	76	382	0	ENST00000257290.5:c.1907G>A	p.Ser636Asn	p.S636N	ENST00000257290	NM_006206.4	636	aGt/aAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539386	187539386	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	47	428	0	ENST00000441802.2:c.8354A>T	p.Asp2785Val	p.D2785V	ENST00000441802	NM_005245.3	2785	gAt/gTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858648	9858648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	219	575	0	ENST00000330684.3:c.2753C>A	p.Pro918His	p.P918H	ENST00000330684	NM_001134407.1	918	cCc/cAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18439803	18439803	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	124	349	0	ENST00000266497.5:c.701T>A	p.Leu234Gln	p.L234Q	ENST00000266497		234	cTa/cAa																																																																															
CD276	80381	MSKCC	GRCh37	15	74001998	74001998	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	135	583	0	ENST00000318443.5:c.1514A>G	p.Asp505Gly	p.D505G	ENST00000318443	NM_001024736.1	505	gAc/gGc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483904	88483904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371770675		P-0033949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	137	635	1	ENST00000360948.2:c.1666G>A	p.Glu556Lys	p.E556K	ENST00000360948	NM_001012338.2	556	Gag/Aag																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099414	4099414	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0033949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	257	553	0	ENST00000262948.5:c.706-2A>G		p.X236_splice	ENST00000262948	NM_030662.3	236																																																																																
RRAS	6237	MSKCC	GRCh37	19	50143243	50143243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	36	352	0	ENST00000246792.3:c.113G>A	p.Gly38Asp	p.G38D	ENST00000246792	NM_006270.3	38	gGc/gAc																																																																															
ALK	238	MSKCC	GRCh37	2	29543628	29543628	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	198	515	0	ENST00000389048.3:c.1535A>T	p.Gln512Leu	p.Q512L	ENST00000389048	NM_004304.4	512	cAg/cTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41547900	41547900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	41	450	0	ENST00000263253.7:c.2881G>C	p.Glu961Gln	p.E961Q	ENST00000263253	NM_001429.3	961	Gaa/Caa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89176398	89176398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	71	309	0	ENST00000336596.2:c.128G>T	p.Gly43Val	p.G43V	ENST00000336596	NM_005233.5	43	gGc/gTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89462335	89462335	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	102	489	0	ENST00000336596.2:c.1807G>C	p.Glu603Gln	p.E603Q	ENST00000336596	NM_005233.5	603	Gaa/Caa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	126	550	0	ENST00000171111.5:c.959G>A	p.Arg320Gln	p.R320Q	ENST00000171111	NM_203500.1	320	cGg/cAg																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs113954997		P-0034133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	104	459	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983049	201983049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	129	606	1	ENST00000359651.3:c.898G>A	p.Glu300Lys	p.E300K	ENST00000359651		300	Gaa/Aaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444363	49444363	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	127	486	1	ENST00000301067.7:c.3008C>A	p.Pro1003Gln	p.P1003Q	ENST00000301067	NM_003482.3	1003	cCa/cAa																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281956	49281956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	135	596	0	ENST00000282018.3:c.1003C>T	p.Pro335Ser	p.P335S	ENST00000282018	NM_020377.2	335	Cct/Tct																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040998	47040998	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	137	304	0	ENST00000329236.7:c.1294C>T	p.Gln432Ter	p.Q432*	ENST00000329236	NM_001204466.1	432	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	90	481	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	88	909	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974782	21974782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138677674		P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	30	173	0	ENST00000304494.5:c.45G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tgG/tgA																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551696	150551696	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1351372864		P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	25	325	0	ENST00000369026.2:c.311G>T	p.Arg104Leu	p.R104L	ENST00000369026	NM_021960.4	104	cGc/cTc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149434821	149434821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	72	748	1	ENST00000286301.3:c.2633C>A	p.Pro878His	p.P878H	ENST00000286301	NM_005211.3	878	cCt/cAt																																																																															
ATM	472	MSKCC	GRCh37	11	108121684	108121684	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	61	546	0	ENST00000278616.4:c.1492G>T	p.Glu498Ter	p.E498*	ENST00000278616	NM_000051.3	498	Gag/Tag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344479	118344479	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	43	273	0	ENST00000534358.1:c.2605G>T	p.Glu869Ter	p.E869*	ENST00000534358	NM_005933.3	869	Gag/Tag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923423	9923423	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	43	700	0	ENST00000330684.3:c.1864C>A	p.Pro622Thr	p.P622T	ENST00000330684	NM_001134407.1	622	Cct/Act																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610361	10610361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	68	853	0	ENST00000171111.5:c.349G>A	p.Glu117Lys	p.E117K	ENST00000171111	NM_203500.1	117	Gag/Aag																																																																															
ALK	238	MSKCC	GRCh37	2	29443655	29443655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	56	687	0	ENST00000389048.3:c.3562C>A	p.Gln1188Lys	p.Q1188K	ENST00000389048	NM_004304.4	1188	Caa/Aaa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419938	41419938	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	20	542	0	ENST00000373198.4:c.383G>T	p.Gly128Val	p.G128V	ENST00000373198	NM_133170.3	128	gGt/gTt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213804	66213804	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	28	457	0	ENST00000273854.3:c.2626G>T	p.Glu876Ter	p.E876*	ENST00000273854	NM_004439.5	876	Gag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517765	187517765	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	26	242	0	ENST00000441802.2:c.12929C>G	p.Pro4310Arg	p.P4310R	ENST00000441802	NM_005245.3	4310	cCc/cGc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524890	187524890	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	72	794	2	ENST00000441802.2:c.10790del	p.Gly3597AlafsTer3	p.G3597Afs*3	ENST00000441802	NM_005245.3	3597	gGc/gc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526321	31526321	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	85	1023	0	ENST00000344624.3:c.719G>C	p.Arg240Pro	p.R240P	ENST00000344624		240	cGa/cCa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520524	176520524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	78	900	0	ENST00000292408.4:c.1369G>T	p.Asp457Tyr	p.D457Y	ENST00000292408	NM_213647.1	457	Gac/Tac																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168743	32168743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	47	701	0	ENST00000375023.3:c.4180C>T	p.Pro1394Ser	p.P1394S	ENST00000375023	NM_004557.3	1394	Cct/Tct																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345752	152345752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	23	274	0	ENST00000359321.1:c.818G>T	p.Gly273Val	p.G273V	ENST00000359321	NM_005431.1	273	gGa/gTa																																																																															
CBL	867	MSKCC	GRCh37	11	119148875	119148875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs397517076		P-0035890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	196	224	0	ENST00000264033.4:c.1096-1G>T		p.X366_splice	ENST00000264033	NM_005188.3	366																																																																																
ATM	472	MSKCC	GRCh37	11	108172434	108172434	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs879254135		P-0035890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	142	455	2	ENST00000278616.4:c.5237G>T	p.Gly1746Val	p.G1746V	ENST00000278616	NM_000051.3	1746	gGa/gTa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17127420	17127420	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	127	546	0	ENST00000285071.4:c.434A>T	p.Asp145Val	p.D145V	ENST00000285071	NM_144997.5	145	gAt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778720		P-0036964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	23	544	1	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89846329	89846329	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	35	547	0	ENST00000389301.3:c.1663A>T	p.Ile555Phe	p.I555F	ENST00000389301	NM_000135.2	555	Atc/Ttc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600446	10600446	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	21	638	0	ENST00000171111.5:c.1409G>C	p.Arg470Pro	p.R470P	ENST00000171111	NM_203500.1	470	cGt/cCt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0036979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	59	707	2	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912414	32912414	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs80358638		P-0036979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	22	134	0	ENST00000380152.3:c.3922G>T	p.Glu1308Ter	p.E1308*	ENST00000380152		1308	Gaa/Taa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998919	11998919	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	28	135	0	ENST00000353533.5:c.421G>T	p.Glu141Ter	p.E141*	ENST00000353533	NM_003010.3	141	Gaa/Taa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390970	139390970	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	52	1063	1	ENST00000277541.6:c.7221C>A	p.Ser2407Arg	p.S2407R	ENST00000277541	NM_017617.3	2407	agC/agA																																																																															
ATRX	546	MSKCC	GRCh37	X	76849242	76849242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	28	301	0	ENST00000373344.5:c.6034G>A	p.Glu2012Lys	p.E2012K	ENST00000373344	NM_000489.3	2012	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0037219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	18	603	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574005	7574005	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	52	825	0	ENST00000269305.4:c.1022T>A	p.Phe341Tyr	p.F341Y	ENST00000269305	NM_001126112.2	341	tTc/tAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436312	110436312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	21	285	0	ENST00000375856.3:c.2089G>T	p.Ala697Ser	p.A697S	ENST00000375856	NM_003749.2	697	Gcc/Tcc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450268	50450268	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	43	543	0	ENST00000331340.3:c.452G>T	p.Gly151Val	p.G151V	ENST00000331340	NM_006060.4	151	gGg/gTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045882	47045882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	17	327	2	ENST00000329236.7:c.2443C>T	p.Arg815Trp	p.R815W	ENST00000329236	NM_001204466.1	815	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	235	608	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618616	37618616	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	122	670	0	ENST00000447079.4:c.292G>T	p.Glu98Ter	p.E98*	ENST00000447079	NM_015083.1	98	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0037226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	252	767	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
MDM2	4193	MSKCC	GRCh37	12	69233279	69233279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	131	373	0	ENST00000462284.1:c.1144G>A	p.Glu382Lys	p.E382K	ENST00000462284	NM_002392.5	382	Gag/Aag																																																																															
MAX	4149	MSKCC	GRCh37	14	65544705	65544705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	305	839	0	ENST00000358664.4:c.221del	p.Met74SerfsTer96	p.M74Sfs*96	ENST00000358664	NM_002382.4	74	aTg/ag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470539	25470539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	298	801	0	ENST00000264709.3:c.935C>T	p.Ser312Phe	p.S312F	ENST00000264709	NM_175629.2	312	tCt/tTt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513238	44513238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	161	410	0	ENST00000291552.4:c.697G>T	p.Asp233Tyr	p.D233Y	ENST00000291552	NM_006758.2	233	Gat/Tat																																																																															
IRF4	3662	MSKCC	GRCh37	6	401453	401453	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1407719860		P-0037226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	212	314	0	ENST00000380956.4:c.775C>T	p.Arg259Trp	p.R259W	ENST00000380956	NM_001195286.1	259	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	148	422	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012444	29012444	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	140	417	0	ENST00000282397.4:c.427C>A	p.Pro143Thr	p.P143T	ENST00000282397	NM_002019.4	143	Ccc/Acc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81962185	81962185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	92	591	0	ENST00000359376.3:c.2537G>A	p.Gly846Glu	p.G846E	ENST00000359376	NM_002661.3	846	gGg/gAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120452	70120452	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	384	655	0	ENST00000245479.2:c.1454G>T	p.Gly485Val	p.G485V	ENST00000245479	NM_000346.3	485	gGg/gTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602256	10602256	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	479	451	0	ENST00000171111.5:c.1322A>G	p.Glu441Gly	p.E441G	ENST00000171111	NM_203500.1	441	gAg/gGg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770575	40770575	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	74	465	0	ENST00000373198.4:c.2807G>T	p.Arg936Leu	p.R936L	ENST00000373198	NM_133170.3	936	cGa/cTa																																																																															
RYBP	23429	MSKCC	GRCh37	3	72428267	72428267	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	321	444	0	ENST00000477973.2:c.623G>C	p.Asp209His	p.D209H	ENST00000477973	NM_012234.5	209	Gat/Cat																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729775	41729775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	147	358	0	ENST00000242208.4:c.754G>A	p.Ala252Thr	p.A252T	ENST00000242208	NM_002192.2	252	Gcc/Acc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739644	41739644	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	280	557	0	ENST00000242208.4:c.329G>T	p.Arg110Met	p.R110M	ENST00000242208	NM_002192.2	110	aGg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55211081	55211081	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	393	448	0	ENST00000275493.2:c.324A>T	p.Arg108Ser	p.R108S	ENST00000275493	NM_005228.3	108	agA/agT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0037239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	39	575	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713513	30713513	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	27	574	0	ENST00000359013.4:c.915del	p.Tyr306MetfsTer19	p.Y306Mfs*19	ENST00000359013	NM_001024847.2	305	Ccc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	273	719	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520017		P-0037269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	239	549	1	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858941	57858941	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754019701		P-0037269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	274	671	1	ENST00000228682.2:c.437C>T	p.Ser146Leu	p.S146L	ENST00000228682	NM_005269.2	146	tCg/tTg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598357	28598357	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	252	665	0	ENST00000253063.3:c.329C>G	p.Ser110Cys	p.S110C	ENST00000253063	NM_031459.4	110	tCc/tGc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118379906	118379906	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	119	271	0	ENST00000534358.1:c.10891G>C	p.Glu3631Gln	p.E3631Q	ENST00000534358	NM_005933.3	3631	Gaa/Caa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46205217	46205217	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	141	453	0	ENST00000334344.6:c.301G>T	p.Glu101Ter	p.E101*	ENST00000334344	NM_152641.2	101	Gag/Tag																																																																															
FLT1	2321	MSKCC	GRCh37	13	28891654	28891654	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	195	595	0	ENST00000282397.4:c.3367G>C	p.Glu1123Gln	p.E1123Q	ENST00000282397	NM_002019.4	1123	Gag/Cag																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133841	41133841	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	143	388	0	ENST00000379561.5:c.1787A>T	p.Glu596Val	p.E596V	ENST00000379561	NM_002015.3	596	gAg/gTg																																																																															
RB1	5925	MSKCC	GRCh37	13	49039446	49039446	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1371240619		P-0037269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	185	489	0	ENST00000267163.4:c.2431A>G	p.Ser811Gly	p.S811G	ENST00000267163	NM_000321.2	811	Agt/Ggt																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643386	38643386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	181	543	0	ENST00000299084.4:c.856G>A	p.Asp286Asn	p.D286N	ENST00000299084	NM_152594.2	286	Gac/Aac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830454	72830454	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1386537099		P-0037269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	190	445	0	ENST00000268489.5:c.6127C>T	p.Pro2043Ser	p.P2043S	ENST00000268489	NM_006885.3	2043	Ccc/Tcc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347000	89347000	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	161	455	0	ENST00000301030.4:c.5950C>G	p.Pro1984Ala	p.P1984A	ENST00000301030	NM_001256183.1	1984	Cca/Gca																																																																															
NF1	4763	MSKCC	GRCh37	17	29508475	29508476	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0037269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	118	417	0	ENST00000358273.4:c.624_625del	p.Gln209ValfsTer6	p.Q209Vfs*6	ENST00000358273	NM_001042492.2	208	GCg/g																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604749	48604749	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs377767375		P-0037269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	169	416	0	ENST00000342988.3:c.1571G>T	p.Trp524Leu	p.W524L	ENST00000342988	NM_005359.5	524	tGg/tTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403199	213403199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	166	393	0	ENST00000342788.4:c.56C>T	p.Thr19Ile	p.T19I	ENST00000342788	NM_005235.2	19	aCc/aTc																																																																															
NF2	4771	MSKCC	GRCh37	22	30064391	30064391	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	171	456	0	ENST00000338641.4:c.955C>T	p.Gln319Ter	p.Q319*	ENST00000338641	NM_000268.3	319	Cag/Tag																																																																															
JAK2	3717	MSKCC	GRCh37	9	5072491	5072491	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0037269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	89	284	0	ENST00000381652.3:c.1642-1G>C		p.X548_splice	ENST00000381652	NM_004972.3	548																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8636775	8636775	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	181	441	0	ENST00000356435.5:c.134G>T	p.Cys45Phe	p.C45F	ENST00000356435		45	tGc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	53	466	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044907	47044907	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	75	940	0	ENST00000329236.7:c.2003del	p.Gly668AlafsTer56	p.G668Afs*56	ENST00000329236	NM_001204466.1	667	Ggg/gg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138197263	138197263	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	34	300	0	ENST00000237289.4:c.765T>A	p.His255Gln	p.H255Q	ENST00000237289	NM_001270507.1	255	caT/caA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089478	27089478	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	49	625	0	ENST00000324856.7:c.2434C>T	p.Gln812Ter	p.Q812*	ENST00000324856	NM_006015.4	812	Cag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108155055	108155055	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	39	482	0	ENST00000278616.4:c.3848T>G	p.Leu1283Arg	p.L1283R	ENST00000278616	NM_000051.3	1283	cTa/cGa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247459	71247459	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	47	623	0	ENST00000318789.4:c.74A>T	p.His25Leu	p.H25L	ENST00000318789	NM_032682.5	25	cAc/cTc																																																																															
NBN	4683	MSKCC	GRCh37	8	90982700	90982700	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	43	377	0	ENST00000265433.3:c.788T>G	p.Phe263Cys	p.F263C	ENST00000265433	NM_002485.4	263	tTt/tGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0037326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	77	554	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0037326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	29	309	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	27	519	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175536	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	30	401	0	ENST00000257430.4:c.4245del	p.Ser1415ArgfsTer4	p.S1415Rfs*4	ENST00000257430	NM_000038.5	1415	agT/ag																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72058499	72058499	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0037355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	37	452	1	ENST00000357731.5:c.940+1G>A		p.X314_splice	ENST00000357731	NM_173808.2	314																																																																																
MGA	23269	MSKCC	GRCh37	15	41989060	41989060	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	22	590	0	ENST00000219905.7:c.1852C>T	p.Arg618Ter	p.R618*	ENST00000219905	NM_001164273.1	618	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710659	114710659	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	34	352	0	ENST00000543371.1:c.144del	p.Val49SerfsTer59	p.V49Sfs*59	ENST00000543371	NM_001198531.1	48	ctA/ct																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161690	56161690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	10	547	0	ENST00000399503.3:c.1187G>A	p.Arg396His	p.R396H	ENST00000399503	NM_005921.1	396	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112173637	112173637	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	14	429	0	ENST00000257430.4:c.2347del	p.Ala783HisfsTer37	p.A783Hfs*37	ENST00000257430	NM_000038.5	782	aaG/aa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946418	71946418	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	201	615	0	ENST00000298229.2:c.2582A>T	p.Glu861Val	p.E861V	ENST00000298229	NM_001567.3	861	gAg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427645	49427645	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs984314815		P-0037378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	348	537	1	ENST00000301067.7:c.10843G>T	p.Ala3615Ser	p.A3615S	ENST00000301067	NM_003482.3	3615	Gct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577514	7577522	+	inframe_deletion	In_Frame_Del	DEL	GTGATGATG	GTGATGATG	-			P-0037378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	336	543	0	ENST00000269305.4:c.759_767del	p.Ile254_Thr256del	p.I254_T256del	ENST00000269305	NM_001126112.2	253	acCATCATCACa/aca																																																																															
NF1	4763	MSKCC	GRCh37	17	29654737	29654737	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs771529172		P-0037378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	199	225	0	ENST00000358273.4:c.5489G>T	p.Arg1830Leu	p.R1830L	ENST00000358273	NM_001042492.2	1830	cGc/cTc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31020700	31020700	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	131	181	0	ENST00000375687.4:c.997A>C	p.Met333Leu	p.M333L	ENST00000375687	NM_015338.5	333	Atg/Ctg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944512	40944512	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	106	410	0	ENST00000373198.4:c.1990T>C	p.Phe664Leu	p.F664L	ENST00000373198	NM_133170.3	664	Ttt/Ctt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876407	35876407	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	340	486	0	ENST00000303115.3:c.1199T>A	p.Val400Glu	p.V400E	ENST00000303115	NM_002185.3	400	gTg/gAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341893	8341893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	119	453	0	ENST00000356435.5:c.4747G>T	p.Gly1583Cys	p.G1583C	ENST00000356435		1583	Ggc/Tgc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39914768	39914768	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0037378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	206	171	0	ENST00000378444.4:c.4596-2A>T		p.X1532_splice	ENST00000378444	NM_001123385.1	1532																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0037379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	406	362	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828144	72828186	+	frameshift_variant	Frame_Shift_Del	DEL	AGTCTTCAATCCCTTCCACCTTAATGGAGGAAGGGCTTAGAAG	AGTCTTCAATCCCTTCCACCTTAATGGAGGAAGGGCTTAGAAG	-			P-0037379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	54	540	0	ENST00000268489.5:c.8395_8437del	p.Leu2800LysfsTer10	p.L2800Kfs*10	ENST00000268489	NM_006885.3	2799	CTTCTAAGCCCTTCCTCCATTAAGGTGGAAGGGATTGAAGACTtt/tt																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50484288	50484288	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	53	666	0	ENST00000394963.4:c.1048C>T	p.Gln350Ter	p.Q350*	ENST00000394963	NM_003076.4	350	Caa/Taa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245067	53245067	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	17	408	0	ENST00000375401.3:c.873C>G	p.Phe291Leu	p.F291L	ENST00000375401	NM_004187.3	291	ttC/ttG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730882026		P-0037476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	614	673	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94068078	94068078	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765322526		P-0037476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	155	362	0	ENST00000369303.4:c.884G>A	p.Arg295His	p.R295H	ENST00000369303	NM_004440.3	295	cGt/cAt																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429960	78429960	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	185	514	0	ENST00000370768.2:c.919G>C	p.Val307Leu	p.V307L	ENST00000370768	NM_003902.3	307	Gtt/Ctt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409116	139409148	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCCGCACACTCATCGATGTTGATGTTACACA	TGCCCGCACACTCATCGATGTTGATGTTACACA	GGCATGCC			P-0037476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	268	801	2	ENST00000277541.6:c.2021_2053delinsGGCATGCC	p.Met674ArgfsTer90	p.M674Rfs*90	ENST00000277541	NM_017617.3	674	aTGTGTAACATCAACATCGATGAGTGTGCGGGCAac/aGGCATGCCac																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0037477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	23	244	0	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct																																																																															
NF1	4763	MSKCC	GRCh37	17	29670106	29670106	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs878853912		P-0037477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	50	533	0	ENST00000358273.4:c.7142A>G	p.Asn2381Ser	p.N2381S	ENST00000358273	NM_001042492.2	2381	aAt/aGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434730	49434731	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0037477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	186	665	0	ENST00000301067.7:c.6822_6823del	p.Pro2276ThrfsTer22	p.P2276Tfs*22	ENST00000301067	NM_003482.3	2274	tcGCcc/tccc																																																																															
MGA	23269	MSKCC	GRCh37	15	42021360	42021360	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0037507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	192	253	0	ENST00000219905.7:c.3658-2A>T		p.X1220_splice	ENST00000219905	NM_001164273.1	1220																																																																																
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	498	466	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604773	48604773	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	140	294	0	ENST00000342988.3:c.1597del	p.Leu533SerfsTer4	p.L533Sfs*4	ENST00000342988	NM_005359.5	532	gCc/gc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228043	36228043	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	713	475	0	ENST00000222270.7:c.7429G>T	p.Glu2477Ter	p.E2477*	ENST00000222270	NM_014727.1	2477	Gag/Tag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251577	212251577	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0037507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	81	303	0	ENST00000342788.4:c.3481+1G>T		p.X1161_splice	ENST00000342788	NM_005235.2	1161																																																																																
TAP1	6890	MSKCC	GRCh37	6	32815316	32815316	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	147	546	0	ENST00000354258.4:c.2057C>G	p.Ser686Cys	p.S686C	ENST00000354258	NM_000593.5	686	tCt/tGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913381		P-0037687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	114	278	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71101750	71101751	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	80	363	0	ENST00000318789.4:c.447dup	p.Gln150ThrfsTer20	p.Q150Tfs*20	ENST00000318789	NM_032682.5	149	-/A																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439622	51439622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	151	412	1	ENST00000262662.1:c.187C>T	p.Pro63Ser	p.P63S	ENST00000262662		63	Ccc/Tcc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373139	118373139	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	251	450	0	ENST00000534358.1:c.6532A>G	p.Ile2178Val	p.I2178V	ENST00000534358	NM_005933.3	2178	Ata/Gta																																																																															
KDM5A	5927	MSKCC	GRCh37	12	461436	461436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	180	552	0	ENST00000399788.2:c.1084A>G	p.Thr362Ala	p.T362A	ENST00000399788	NM_001042603.1	362	Aca/Gca																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786752	3786752	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	160	685	0	ENST00000262367.5:c.4459C>G	p.His1487Asp	p.H1487D	ENST00000262367	NM_004380.2	1487	Cac/Gac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11118629	11118629	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	203	590	0	ENST00000344626.4:c.2053G>T	p.Glu685Ter	p.E685*	ENST00000344626	NM_003072.3	685	Gag/Tag																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942529	17942529	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs761651756		P-0037687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	222	598	0	ENST00000458235.1:c.2759G>T	p.Arg920Leu	p.R920L	ENST00000458235	NM_000215.3	920	cGc/cTc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662577	227662577	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	63	601	0	ENST00000305123.5:c.878C>G	p.Pro293Arg	p.P293R	ENST00000305123	NM_005544.2	293	cCg/cGg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141017	55141017	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs878854823		P-0037687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	49	463	0	ENST00000257290.5:c.1663T>C	p.Tyr555His	p.Y555H	ENST00000257290	NM_006206.4	555	Tat/Cat																																																																															
IL7R	3575	MSKCC	GRCh37	5	35861005	35861005	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	107	481	0	ENST00000303115.3:c.134A>T	p.Gln45Leu	p.Q45L	ENST00000303115	NM_002185.3	45	cAg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0037770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	550	428	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599868	10599868	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0037770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	339	756	1	ENST00000171111.5:c.1708G>A	p.Gly570Arg	p.G570R	ENST00000171111	NM_203500.1	570	Gga/Aga																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18524191	18524191	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	174	639	0	ENST00000266497.5:c.1703C>A	p.Ala568Glu	p.A568E	ENST00000266497		568	gCa/gAa																																																																															
INSR	3643	MSKCC	GRCh37	19	7128930	7128930	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	120	572	0	ENST00000302850.5:c.2878G>T	p.Gly960Cys	p.G960C	ENST00000302850	NM_000208.2	960	Ggc/Tgc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138549	11138549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	341	755	0	ENST00000344626.4:c.3305T>C	p.Phe1102Ser	p.F1102S	ENST00000344626	NM_003072.3	1102	tTc/tCc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624788	9624788	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	197	436	0	ENST00000353224.5:c.189G>C	p.Gln63His	p.Q63H	ENST00000353224	NM_177990.2	63	caG/caC																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670361	30670361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	286	584	0	ENST00000376406.3:c.6071C>T	p.Thr2024Ile	p.T2024I	ENST00000376406	NM_014641.2	2024	aCa/aTa																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5549514	5549514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs544152379		P-0037770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	359	780	0	ENST00000397747.3:c.541C>T	p.Arg181Cys	p.R181C	ENST00000397747	NM_025239.3	181	Cgc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221293	1221298	+	stop_gained	Nonsense_Mutation	ONP	CGCCAT	CGCCAT	GGCAAC			P-0037770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	327	698	0	ENST00000326873.7:c.816_821delinsGGCAAC	p.Tyr272_Ile274delinsTer	p.Y272_I274delins*	ENST00000326873	NM_000455.4	272	taCGCCATc/taGGCAACc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	253	296	0	ENST00000304494.5:c.250G>C	p.Asp84His	p.D84H	ENST00000304494	NM_000077.4	84	Gac/Cac																																																																															
NBN	4683	MSKCC	GRCh37	8	90993117	90993117	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs587780096		P-0037789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	34	271	0	ENST00000265433.3:c.325G>T	p.Glu109Ter	p.E109*	ENST00000265433	NM_002485.4	109	Gag/Tag																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849860	156849860	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	486	687	0	ENST00000524377.1:c.2116A>G	p.Thr706Ala	p.T706A	ENST00000524377	NM_002529.3	706	Acc/Gcc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588121	69588123	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0037789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	207	681	0	ENST00000168712.1:c.575_577del	p.Arg192_Val193delinsLeu	p.R192_V193delinsL	ENST00000168712	NM_002007.2	192	cGAGtg/ctg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426750	121426750	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	262	809	0	ENST00000257555.6:c.441C>G	p.His147Gln	p.H147Q	ENST00000257555		147	caC/caG																																																																															
FLT3	2322	MSKCC	GRCh37	13	28592681	28592681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	380	633	0	ENST00000241453.7:c.2464G>T	p.Gly822Trp	p.G822W	ENST00000241453	NM_004119.2	822	Ggg/Tgg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143003290	143003290	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0037789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	134	583	0	ENST00000262992.4:c.2536A>T	p.Lys846Ter	p.K846*	ENST00000262992	NM_001101669.1	846	Aaa/Taa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187554979	187554979	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0037789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	71	279	0	ENST00000441802.2:c.4184-2A>T		p.X1395_splice	ENST00000441802	NM_005245.3	1395																																																																																
LYN	4067	MSKCC	GRCh37	8	56863295	56863295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	150	634	1	ENST00000519728.1:c.439G>A	p.Gly147Arg	p.G147R	ENST00000519728	NM_002350.3	147	Gga/Aga																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665213	138665213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	222	734	1	ENST00000330315.3:c.352G>A	p.Glu118Lys	p.E118K	ENST00000330315	NM_023067.3	118	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	310	814	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
RB1	5925	MSKCC	GRCh37	13	48955381	48955381	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T	rs1258442224		P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	145	213	0	ENST00000267163.4:c.1499-2A>T		p.X500_splice	ENST00000267163	NM_000321.2	500																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212248766	212248766	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs549128376		P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	113	287	0	ENST00000342788.4:c.3501G>T	p.Glu1167Asp	p.E1167D	ENST00000342788	NM_005235.2	1167	gaG/gaT																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464457	25464457	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	313	520	0	ENST00000264709.3:c.2056del	p.Asp686ThrfsTer19	p.D686Tfs*19	ENST00000264709	NM_175629.2	686	Gac/ac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600336	10600336	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs751088754		P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	291	676	1	ENST00000171111.5:c.1519C>T	p.Arg507Ter	p.R507*	ENST00000171111	NM_203500.1	507	Cga/Tga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602334	10602334	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	200	825	0	ENST00000171111.5:c.1244G>T	p.Arg415Leu	p.R415L	ENST00000171111	NM_203500.1	415	cGc/cTc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625191	69625191	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	127	786	0	ENST00000334134.2:c.602C>A	p.Pro201His	p.P201H	ENST00000334134	NM_005247.2	201	cCc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076967	41076967	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	85	471	1	ENST00000373198.4:c.1453C>T	p.Pro485Ser	p.P485S	ENST00000373198	NM_133170.3	485	Cca/Tca																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72058539	72058539	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	110	494	0	ENST00000357731.5:c.901A>T	p.Asn301Tyr	p.N301Y	ENST00000357731	NM_173808.2	301	Aac/Tac																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551357	150551357	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2380	212	918	0	ENST00000369026.2:c.650G>T	p.Gly217Val	p.G217V	ENST00000369026	NM_021960.4	217	gGg/gTg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193205424	193205424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	99	445	0	ENST00000367435.3:c.1355G>T	p.Trp452Leu	p.W452L	ENST00000367435	NM_024529.4	452	tGg/tTg																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612793	228612793	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	129	682	0	ENST00000366696.1:c.234C>A	p.Asp78Glu	p.D78E	ENST00000366696	NM_003493.2	78	gaC/gaA																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100744	8100744	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	251	797	2	ENST00000346208.3:c.718C>A	p.Leu240Met	p.L240M	ENST00000346208		240	Ctg/Atg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279539	123279539	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	148	645	0	ENST00000358487.5:c.893G>C	p.Gly298Ala	p.G298A	ENST00000358487	NM_000141.4	298	gGc/gCc																																																																															
YAP1	10413	MSKCC	GRCh37	11	102094422	102094422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	151	487	0	ENST00000282441.5:c.1102C>T	p.Pro368Ser	p.P368S	ENST00000282441	NM_001130145.2	368	Ccc/Tcc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118352667	118352667	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	248	583	1	ENST00000534358.1:c.3872C>G	p.Ser1291Cys	p.S1291C	ENST00000534358	NM_005933.3	1291	tCc/tGc																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50483716	50483716	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	244	579	1	ENST00000394963.4:c.821G>T	p.Arg274Leu	p.R274L	ENST00000394963	NM_003076.4	274	cGg/cTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864148	57864148	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs766159479		P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	222	611	0	ENST00000228682.2:c.1625G>T	p.Arg542Leu	p.R542L	ENST00000228682	NM_005269.2	542	cGc/cTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133245071	133245071	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	265	790	0	ENST00000320574.5:c.2044G>T	p.Glu682Ter	p.E682*	ENST00000320574	NM_006231.2	682	Gaa/Taa																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68301868	68301868	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	250	502	0	ENST00000487270.1:c.270G>C	p.Leu90Phe	p.L90F	ENST00000487270	NM_133509.3	90	ttG/ttC																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562639	95562639	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	186	386	2	ENST00000343455.3:c.4618G>T	p.Gly1540Ter	p.G1540*	ENST00000343455	NM_177438.2	1540	Gga/Tga																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226386	2226386	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	240	819	1	ENST00000326181.6:c.1998+1G>T		p.X666_splice	ENST00000326181	NM_032271.2	666																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36214636	36214636	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376006013		P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	149	814	0	ENST00000222270.7:c.3062G>A	p.Arg1021Gln	p.R1021Q	ENST00000222270	NM_014727.1	1021	cGg/cAg																																																																															
AXL	558	MSKCC	GRCh37	19	41726690	41726690	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	180	844	0	ENST00000301178.4:c.235G>C	p.Ala79Pro	p.A79P	ENST00000301178	NM_021913.4	79	Gcg/Ccg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50917037	50917037	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	297	745	1	ENST00000440232.2:c.2289C>A	p.Phe763Leu	p.F763L	ENST00000440232	NM_002691.3	763	ttC/ttA																																																																															
CENPA	1058	MSKCC	GRCh37	2	27014998	27014998	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	232	394	0	ENST00000335756.4:c.101-1G>T		p.X34_splice	ENST00000335756	NM_001809.3	34																																																																																
ALK	238	MSKCC	GRCh37	2	29462669	29462669	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	154	779	0	ENST00000389048.3:c.2232del	p.Gly746AlafsTer6	p.G746Afs*6	ENST00000389048	NM_004304.4	744	ggG/gg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128051194	128051194	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	164	613	0	ENST00000285398.2:c.129del	p.Lys44SerfsTer24	p.K44Sfs*24	ENST00000285398	NM_000122.1	43	ggG/gg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31374404	31374404	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	173	693	0	ENST00000328111.2:c.403G>T	p.Glu135Ter	p.E135*	ENST00000328111	NM_006892.3	135	Gag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306539	41306539	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	92	550	1	ENST00000373198.4:c.1120G>T	p.Gly374Trp	p.G374W	ENST00000373198	NM_133170.3	374	Ggg/Tgg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499412	89499413	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	187	433	2	ENST00000336596.2:c.2582_2583delinsTT	p.Trp861Phe	p.W861F	ENST00000336596	NM_005233.5	861	tGG/tTT																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670789	134670789	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs368276671		P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	94	580	0	ENST00000398015.3:c.700G>C	p.Val234Leu	p.V234L	ENST00000398015	NM_004441.4	234	Gtg/Ctg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247256	153247256	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	134	377	0	ENST00000281708.4:c.1546A>T	p.Ser516Cys	p.S516C	ENST00000281708	NM_033632.3	516	Agt/Tgt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628239	187628239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	281	692	0	ENST00000441802.2:c.2743G>A	p.Val915Ile	p.V915I	ENST00000441802	NM_005245.3	915	Gta/Ata																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968275	2968275	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	173	800	1	ENST00000396946.4:c.1711G>T	p.Asp571Tyr	p.D571Y	ENST00000396946	NM_032415.4	571	Gac/Tac																																																																															
ETV1	2115	MSKCC	GRCh37	7	13978860	13978860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	137	409	0	ENST00000405192.2:c.247G>T	p.Gly83Cys	p.G83C	ENST00000405192	NM_001163147.1	83	Ggc/Tgc																																																																															
FH	2271	MSKCC	GRCh37	1	241667458	241667458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	34	315	0	ENST00000366560.3:c.992C>A	p.Thr331Asn	p.T331N	ENST00000366560	NM_000143.3	331	aCt/aAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132536	11132536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	124	800	1	ENST00000344626.4:c.2752C>T	p.Leu918Phe	p.L918F	ENST00000344626	NM_003072.3	918	Ctt/Ttt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	69	425	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	45	697	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
YAP1	10413	MSKCC	GRCh37	11	101984924	101984924	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	31	379	0	ENST00000282441.5:c.371G>C	p.Arg124Pro	p.R124P	ENST00000282441	NM_001130145.2	124	cGa/cCa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779332	3779332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	87	775	1	ENST00000262367.5:c.5716C>T	p.Pro1906Ser	p.P1906S	ENST00000262367	NM_004380.2	1906	Cct/Tct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088772	27088772	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	93	636	0	ENST00000324856.7:c.2381G>T	p.Gly794Val	p.G794V	ENST00000324856	NM_006015.4	794	gGg/gTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120512284	120512284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	54	556	0	ENST00000256646.2:c.958G>C	p.Gly320Arg	p.G320R	ENST00000256646	NM_024408.3	320	Gga/Cga																																																																															
NUF2	83540	MSKCC	GRCh37	1	163297340	163297340	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	56	421	0	ENST00000271452.3:c.186A>T	p.Glu62Asp	p.E62D	ENST00000271452	NM_145697.2	62	gaA/gaT																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112771551	112771552	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	72	448	0	ENST00000369452.4:c.1727dup	p.Pro577SerfsTer9	p.P577Sfs*9	ENST00000369452	NM_007373.3	575	cag/caGg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986956	36986956	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	169	678	0	ENST00000354822.5:c.733A>T	p.Lys245Ter	p.K245*	ENST00000354822	NM_001079668.2	245	Aaa/Taa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218440	36218440	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	71	753	0	ENST00000222270.7:c.4219G>T	p.Gly1407Trp	p.G1407W	ENST00000222270	NM_014727.1	1407	Ggg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790124	40790124	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	49	690	0	ENST00000373198.4:c.2607C>A	p.Tyr869Ter	p.Y869*	ENST00000373198	NM_133170.3	869	taC/taA																																																																															
SMO	6608	MSKCC	GRCh37	7	128849225	128849225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	84	469	0	ENST00000249373.3:c.1453C>G	p.Arg485Gly	p.R485G	ENST00000249373	NM_005631.4	485	Cgg/Ggg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132871	152132871	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	34	511	0	ENST00000262189.6:c.1A>T	p.Met1?	p.M1?	ENST00000262189	NM_170606.2	1	Atg/Ttg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380282	25380282	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	62	334	0	ENST00000256078.4:c.176C>G	p.Ala59Gly	p.A59G	ENST00000256078	NM_033360.2	59	gCa/gGa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528582	89528582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	49	198	0	ENST00000336596.2:c.2882C>A	p.Pro961Gln	p.P961Q	ENST00000336596	NM_005233.5	961	cCa/cAa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953011	2953011	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1172378918		P-0037879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	43	647	1	ENST00000396946.4:c.2929G>A	p.Val977Met	p.V977M	ENST00000396946	NM_032415.4	977	Gtg/Atg																																																																															
MGA	23269	MSKCC	GRCh37	15	42005607	42005607	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	43	321	0	ENST00000219905.7:c.3343G>T	p.Gly1115Ter	p.G1115*	ENST00000219905	NM_001164273.1	1115	Gga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29548866	29548866	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0037879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	53	443	0	ENST00000358273.4:c.1642-2A>T		p.X548_splice	ENST00000358273	NM_001042492.2	548																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	13	393	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0038019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	96	545	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578179	7578179	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0038019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	56	740	0	ENST00000269305.4:c.670G>T	p.Glu224Ter	p.E224*	ENST00000269305	NM_001126112.2	224	Gag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0038183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	6	532	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	102	513	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289922	15289922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1358	92	860	0	ENST00000263388.2:c.3632C>T	p.Ser1211Leu	p.S1211L	ENST00000263388	NM_000435.2	1211	tCa/tTa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572549	64572549	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1201	75	738	0	ENST00000337652.1:c.1322G>T	p.Trp441Leu	p.W441L	ENST00000337652	NM_130803.2	441	tGg/tTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044970	47044970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	164	877	0	ENST00000329236.7:c.2062C>T	p.Arg688Cys	p.R688C	ENST00000329236	NM_001204466.1	688	Cgc/Tgc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933061	39933062	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1199	73	849	1	ENST00000378444.4:c.1537_1538delinsCT	p.Gly513Leu	p.G513L	ENST00000378444	NM_001123385.1	513	GGg/CTg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123243215	123243215	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	119	907	0	ENST00000358487.5:c.2298T>G	p.Asn766Lys	p.N766K	ENST00000358487	NM_000141.4	766	aaT/aaG																																																																															
B2M	567	MSKCC	GRCh37	15	45007750	45007796	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAAAAAGTGGAGCATTCAGACTTGTCTTTCAGCAAGGACTGGTCT	TTGAAAAAGTGGAGCATTCAGACTTGTCTTTCAGCAAGGACTGGTCT	-			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	39	480	0	ENST00000558401.1:c.199_245del	p.Glu67LeufsTer7	p.E67Lfs*7	ENST00000558401	NM_004048.2	66	aTTGAAAAAGTGGAGCATTCAGACTTGTCTTTCAGCAAGGACTGGTCT/a																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858238	9858238	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs370107080		P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	121	486	0	ENST00000330684.3:c.3163G>C	p.Glu1055Gln	p.E1055Q	ENST00000330684	NM_001134407.1	1055	Gag/Cag																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14014077	14014077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1431	79	685	0	ENST00000311895.7:c.55G>A	p.Glu19Lys	p.E19K	ENST00000311895	NM_005236.2	19	Gag/Aag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15971339	15971339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	135	713	0	ENST00000268712.3:c.4610G>T	p.Gly1537Val	p.G1537V	ENST00000268712	NM_006311.3	1537	gGg/gTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37873571	37873571	+	splice_acceptor_variant	Splice_Site	DEL	A	A	-			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	71	660	0	ENST00000269571.5:c.1738-2del		p.X580_splice	ENST00000269571		580																																																																																
CUL3	8452	MSKCC	GRCh37	2	225376078	225376078	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	50	489	0	ENST00000264414.4:c.876G>C	p.Lys292Asn	p.K292N	ENST00000264414	NM_003590.4	292	aaG/aaC																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636706	176636706	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	83	526	1	ENST00000439151.2:c.1306G>T	p.Gly436Trp	p.G436W	ENST00000439151	NM_022455.4	436	Ggg/Tgg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729877	41729877	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	88	592	0	ENST00000242208.4:c.652T>A	p.Trp218Arg	p.W218R	ENST00000242208	NM_002192.2	218	Tgg/Agg																																																																															
MET	4233	MSKCC	GRCh37	7	116415099	116415099	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	187	660	0	ENST00000397752.3:c.3193G>T	p.Ala1065Ser	p.A1065S	ENST00000397752	NM_000245.2	1065	Gca/Tca																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923600	39923600	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	60	716	0	ENST00000378444.4:c.3491G>T	p.Arg1164Leu	p.R1164L	ENST00000378444	NM_001123385.1	1164	cGa/cTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0039079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1305	303	675	2	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0039079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	195	469	4	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764146326		P-0039079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	213	924	2	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0039359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	351	532	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	225	706	0	ENST00000269305.4:c.532C>G	p.His178Asp	p.H178D	ENST00000269305	NM_001126112.2	178	Cac/Gac																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647438	3647438	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1377493011		P-0039359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1181	149	814	0	ENST00000294008.3:c.1625T>C	p.Met542Thr	p.M542T	ENST00000294008	NM_032444.2	542	aTg/aCg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39224483	39224484	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	163	659	0	ENST00000402219.2:c.2874dup	p.Ser959Ter	p.S959*	ENST00000402219	NM_005633.3	958	-/T																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198285189	198285189	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	84	525	0	ENST00000335508.6:c.378G>A	p.Met126Ile	p.M126I	ENST00000335508	NM_012433.2	126	atG/atA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	35	526	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226561	2226561	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0039391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	60	798	1	ENST00000326181.6:c.1999G>T	p.Val667Phe	p.V667F	ENST00000326181	NM_032271.2	667	Gtt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	249	587	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578515	7578515	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	1131	789	0	ENST00000269305.4:c.415A>T	p.Lys139Ter	p.K139*	ENST00000269305	NM_001126112.2	139	Aag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445173	49445173	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs560581125		P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	78	414	26	ENST00000301067.7:c.2293G>C	p.Ala765Pro	p.A765P	ENST00000301067	NM_003482.3	765	Gct/Cct																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670544	134670544	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	664	706	0	ENST00000398015.3:c.455G>T	p.Gly152Val	p.G152V	ENST00000398015	NM_004441.4	152	gGg/gTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245521	153245521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	183	381	0	ENST00000281708.4:c.1670G>T	p.Gly557Val	p.G557V	ENST00000281708	NM_033632.3	557	gGa/gTa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610496	10610496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	951	670	1	ENST00000171111.5:c.214C>T	p.Leu72Phe	p.L72F	ENST00000171111	NM_203500.1	72	Ctc/Ttc																																																																															
PGR	5241	MSKCC	GRCh37	11	100920740	100920740	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	588	422	0	ENST00000325455.5:c.2408A>T	p.Gln803Leu	p.Q803L	ENST00000325455	NM_001202474.3	803	cAg/cTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993350	72993350	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	573	709	0	ENST00000268489.5:c.695G>T	p.Arg232Leu	p.R232L	ENST00000268489	NM_006885.3	232	cGc/cTc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15989627	15989627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	422	332	0	ENST00000268712.3:c.3146C>T	p.Pro1049Leu	p.P1049L	ENST00000268712	NM_006311.3	1049	cCa/cTa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17120390	17120390	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	59	439	0	ENST00000285071.4:c.1169T>C	p.Val390Ala	p.V390A	ENST00000285071	NM_144997.5	390	gTa/gCa																																																																															
STK11	6794	MSKCC	GRCh37	19	1222991	1222993	+	frameshift_variant	Frame_Shift_Del	DEL	CGG	CGG	TT			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	529	572	1	ENST00000326873.7:c.928_930delinsTT	p.Arg310LeufsTer26	p.R310Lfs*26	ENST00000326873	NM_000455.4	310	CGG/TT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210945	36210945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1146	344	786	1	ENST00000222270.7:c.696G>T	p.Arg232Ser	p.R232S	ENST00000222270	NM_014727.1	232	agG/agT																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99154409	99154409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	290	585	0	ENST00000074304.5:c.551C>A	p.Thr184Asn	p.T184N	ENST00000074304	NM_001134224.1	184	aCc/aAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127556	55127556	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	285	273	0	ENST00000257290.5:c.344G>T	p.Arg115Met	p.R115M	ENST00000257290	NM_006206.4	115	aGg/aTg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55153603	55153603	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	378	413	0	ENST00000257290.5:c.2569C>A	p.Leu857Met	p.L857M	ENST00000257290	NM_006206.4	857	Ctg/Atg																																																																															
KDR	3791	MSKCC	GRCh37	4	55981479	55981479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	188	393	0	ENST00000263923.4:c.458C>G	p.Ser153Cys	p.S153C	ENST00000263923	NM_002253.2	153	tCc/tGc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467692	66467692	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	291	311	0	ENST00000273854.3:c.577A>G	p.Met193Val	p.M193V	ENST00000273854	NM_004439.5	193	Atg/Gtg																																																																															
MET	4233	MSKCC	GRCh37	7	116371837	116371853	+	frameshift_variant	Frame_Shift_Del	DEL	TAACATCTATATCCACC	TAACATCTATATCCACC	-			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	184	431	0	ENST00000397752.3:c.1317_1333del	p.Leu439PhefsTer3	p.L439Ffs*3	ENST00000397752	NM_000245.2	439	tTAACATCTATATCCACC/t																																																																															
PREX2	80243	MSKCC	GRCh37	8	69039612	69039612	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			15	466	337	0	ENST00000288368.4:c.3725-1G>T		p.X1242_splice	ENST00000288368	NM_024870.2	1242																																																																																
RECQL4	9401	MSKCC	GRCh37	8	145741686	145741686	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1367	329	663	0	ENST00000428558.2:c.817G>C	p.Ala273Pro	p.A273P	ENST00000428558	NM_004260.3	273	Gca/Cca																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741693	145741693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1361	328	690	0	ENST00000428558.2:c.810G>T	p.Glu270Asp	p.E270D	ENST00000428558	NM_004260.3	270	gaG/gaT																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70967581	70967596	+	frameshift_variant	Frame_Shift_Del	DEL	CGCATGTGTTTGTTTA	CGCATGTGTTTGTTTA	-			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	89	535	0	ENST00000276594.2:c.1427_1442del	p.Leu476GlnfsTer85	p.L476Qfs*85	ENST00000276594	NM_024504.3	476	cTAAACAAACACATGCGa/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876659802		P-0039544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1195	48	651	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	65	386	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0039781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	91	787	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044892	47044892	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	124	1013	1	ENST00000329236.7:c.1984G>T	p.Glu662Ter	p.E662*	ENST00000329236	NM_001204466.1	662	Gag/Tag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177458	56177458	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs189290632		P-0039781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	32	344	0	ENST00000399503.3:c.2431A>G	p.Met811Val	p.M811V	ENST00000399503	NM_005921.1	811	Atg/Gtg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163306568	163306568	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	36	427	0	ENST00000271452.3:c.365G>C	p.Ser122Thr	p.S122T	ENST00000271452	NM_145697.2	122	aGt/aCt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426991	49426991	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1002386392		P-0039781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	134	666	0	ENST00000301067.7:c.11497C>T	p.Arg3833Trp	p.R3833W	ENST00000301067	NM_003482.3	3833	Cgg/Tgg																																																																															
KIT	3815	MSKCC	GRCh37	4	55602936	55602936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	28	384	0	ENST00000288135.5:c.2646G>A	p.Met882Ile	p.M882I	ENST00000288135	NM_000222.2	882	atG/atA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	92	314	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133263850	133263850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	28	183	0	ENST00000320574.5:c.52G>A	p.Glu18Lys	p.E18K	ENST00000320574	NM_006231.2	18	Gag/Aag																																																																															
DIS3	22894	MSKCC	GRCh37	13	73345240	73345240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	54	286	0	ENST00000377767.4:c.1649C>T	p.Ser550Phe	p.S550F	ENST00000377767	NM_014953.3	550	tCc/tTc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39937175	39937175	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	88	552	0	ENST00000378444.4:c.8C>G	p.Ser3Ter	p.S3*	ENST00000378444	NM_001123385.1	3	tCa/tGa																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981761	101981761	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	138	399	0	ENST00000282441.5:c.182C>G	p.Ser61Trp	p.S61W	ENST00000282441	NM_001130145.2	61	tCg/tGg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056210	26056210	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	128	324	0	ENST00000343677.2:c.447G>C	p.Lys149Asn	p.K149N	ENST00000343677	NM_005319.3	149	aaG/aaC																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5225783	5225783	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1159864455		P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	103	625	1	ENST00000357368.4:c.2449G>A	p.Asp817Asn	p.D817N	ENST00000357368	NM_002850.3	817	Gat/Aat																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32183005	32183005	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	96	396	0	ENST00000375023.3:c.2019G>C	p.Gln673His	p.Q673H	ENST00000375023	NM_004557.3	673	caG/caC																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292580	15292580	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867505691		P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	105	661	2	ENST00000263388.2:c.2599G>A	p.Gly867Ser	p.G867S	ENST00000263388	NM_000435.2	867	Ggc/Agc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913409		P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	52	237	0	ENST00000349496.5:c.134C>G	p.Ser45Cys	p.S45C	ENST00000349496	NM_001904.3	45	tCt/tGt																																																																															
AXL	558	MSKCC	GRCh37	19	41762430	41762430	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781426924		P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	39	523	0	ENST00000301178.4:c.2110C>T	p.Arg704Cys	p.R704C	ENST00000301178	NM_021913.4	704	Cgc/Tgc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946463	2946463	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777458922		P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	64	466	0	ENST00000396946.4:c.3274C>T	p.Arg1092Ter	p.R1092*	ENST00000396946	NM_032415.4	1092	Cga/Tga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034491	47034491	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	70	529	0	ENST00000329236.7:c.345G>T	p.Gln115His	p.Q115H	ENST00000329236	NM_001204466.1	115	caG/caT																																																																															
NUF2	83540	MSKCC	GRCh37	1	163315571	163315571	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	37	233	0	ENST00000271452.3:c.911C>G	p.Ser304Ter	p.S304*	ENST00000271452	NM_145697.2	304	tCa/tGa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099508	157099508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	72	218	0	ENST00000346085.5:c.445C>A	p.Gln149Lys	p.Q149K	ENST00000346085	NM_020732.3	149	Cag/Aag																																																																															
WT1	7490	MSKCC	GRCh37	11	32414268	32414268	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	100	336	0	ENST00000332351.3:c.1283G>C	p.Cys428Ser	p.C428S	ENST00000332351	NM_024426.4	428	tGt/tCt																																																																															
POLE	5426	MSKCC	GRCh37	12	133245268	133245268	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	94	577	0	ENST00000320574.5:c.1979G>C	p.Gly660Ala	p.G660A	ENST00000320574	NM_006231.2	660	gGa/gCa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258672	16258672	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	65	424	0	ENST00000375759.3:c.5937G>C	p.Glu1979Asp	p.E1979D	ENST00000375759	NM_015001.2	1979	gaG/gaC																																																																															
ID3	3399	MSKCC	GRCh37	1	23885815	23885815	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	67	445	0	ENST00000374561.5:c.103G>C	p.Glu35Gln	p.E35Q	ENST00000374561	NM_002167.4	35	Gag/Cag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458246	120458246	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	96	532	0	ENST00000256646.2:c.7099C>G	p.Gln2367Glu	p.Q2367E	ENST00000256646	NM_024408.3	2367	Cag/Gag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458732	120458732	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	82	422	0	ENST00000256646.2:c.6613C>G	p.His2205Asp	p.H2205D	ENST00000256646	NM_024408.3	2205	Cat/Gat																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120459131	120459131	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	88	505	0	ENST00000256646.2:c.6214C>G	p.Pro2072Ala	p.P2072A	ENST00000256646	NM_024408.3	2072	Cca/Gca																																																																															
IL10	3586	MSKCC	GRCh37	1	206944390	206944390	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	46	307	0	ENST00000423557.1:c.240C>G	p.Cys80Trp	p.C80W	ENST00000423557	NM_000572.2	80	tgC/tgG																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724749	112724749	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1050720476		P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	75	290	0	ENST00000369452.4:c.633C>G	p.Ile211Met	p.I211M	ENST00000369452	NM_007373.3	211	atC/atG																																																																															
ATM	472	MSKCC	GRCh37	11	108159769	108159769	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	40	248	0	ENST00000278616.4:c.4175A>T	p.Tyr1392Phe	p.Y1392F	ENST00000278616	NM_000051.3	1392	tAt/tTt																																																																															
MDM2	4193	MSKCC	GRCh37	12	69229743	69229743	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	31	210	0	ENST00000462284.1:c.819A>T	p.Glu273Asp	p.E273D	ENST00000462284	NM_002392.5	273	gaA/gaT																																																																															
CBFB	865	MSKCC	GRCh37	16	67063327	67063327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	27	211	0	ENST00000412916.2:c.17C>T	p.Pro6Leu	p.P6L	ENST00000412916		6	cCc/cTc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17117021	17117021	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	113	480	0	ENST00000285071.4:c.1688C>G	p.Ser563Ter	p.S563*	ENST00000285071	NM_144997.5	563	tCa/tGa																																																																															
NF1	4763	MSKCC	GRCh37	17	29665721	29665721	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	35	174	0	ENST00000358273.4:c.6820-1G>T		p.X2274_splice	ENST00000358273	NM_001042492.2	2274																																																																																
CDK12	51755	MSKCC	GRCh37	17	37618478	37618478	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	57	412	0	ENST00000447079.4:c.154G>C	p.Asp52His	p.D52H	ENST00000447079	NM_015083.1	52	Gac/Cac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271648	15271648	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	131	760	0	ENST00000263388.2:c.6791C>G	p.Ser2264Ter	p.S2264*	ENST00000263388	NM_000435.2	2264	tCa/tGa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272291	15272291	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	95	516	0	ENST00000263388.2:c.6148C>G	p.Leu2050Val	p.L2050V	ENST00000263388	NM_000435.2	2050	Ctc/Gtc																																																																															
ALK	238	MSKCC	GRCh37	2	29462623	29462623	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	55	587	0	ENST00000389048.3:c.2278C>A	p.Leu760Met	p.L760M	ENST00000389048	NM_004304.4	760	Ctg/Atg																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736158	204736159	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	33	256	0	ENST00000302823.3:c.519dup	p.Leu174ValfsTer5	p.L174Vfs*5	ENST00000302823	NM_005214.4	172	tcg/tcGg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546612	9546612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	70	365	0	ENST00000353224.5:c.1410C>A	p.His470Gln	p.H470Q	ENST00000353224	NM_177990.2	470	caC/caA																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164031	47164031	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	18	219	0	ENST00000409792.3:c.2095G>C	p.Asp699His	p.D699H	ENST00000409792	NM_014159.6	699	Gat/Cat																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169991111	169991111	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	72	259	0	ENST00000295797.4:c.629C>G	p.Ser210Cys	p.S210C	ENST00000295797	NM_002740.5	210	tCt/tGt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55152036	55152036	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	56	384	1	ENST00000257290.5:c.2468A>G	p.Asn823Ser	p.N823S	ENST00000257290	NM_006206.4	823	aAc/aGc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249534	153249534	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	62	312	0	ENST00000281708.4:c.1244G>C	p.Arg415Thr	p.R415T	ENST00000281708	NM_033632.3	415	aGa/aCa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026415	6026415	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs778531080		P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	48	237	0	ENST00000265849.7:c.1981G>T	p.Glu661Ter	p.E661*	ENST00000265849	NM_000535.5	661	Gaa/Taa																																																																															
CDK6	1021	MSKCC	GRCh37	7	92247433	92247433	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	85	239	0	ENST00000265734.4:c.787G>C	p.Glu263Gln	p.E263Q	ENST00000265734	NM_001259.6	263	Gag/Cag																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346058	152346058	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	149	423	0	ENST00000359321.1:c.512C>G	p.Ser171Cys	p.S171C	ENST00000359321	NM_005431.1	171	tCt/tGt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285513	38285513	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	76	479	0	ENST00000425967.3:c.640A>T	p.Thr214Ser	p.T214S	ENST00000425967	NM_001174067.1	214	Acc/Tcc																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139565442	139565442	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	108	560	0	ENST00000308874.7:c.612G>C	p.Gln204His	p.Q204H	ENST00000308874		204	caG/caC																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1331512	1331512	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	96	378	0	ENST00000381566.1:c.16C>G	p.Leu6Val	p.L6V	ENST00000381566		6	Ctg/Gtg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39916546	39916546	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	58	503	0	ENST00000378444.4:c.4457A>G	p.Lys1486Arg	p.K1486R	ENST00000378444	NM_001123385.1	1486	aAg/aGg																																																																															
MED12	9968	MSKCC	GRCh37	X	70361799	70361799	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	108	540	1	ENST00000374080.3:c.6475C>T	p.Gln2159Ter	p.Q2159*	ENST00000374080		2159	Caa/Taa																																																																															
BTK	695	MSKCC	GRCh37	X	100615638	100615638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	76	419	0	ENST00000308731.7:c.694G>T	p.Asp232Tyr	p.D232Y	ENST00000308731	NM_000061.2	232	Gat/Tat																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509111	106509111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	68	809	0	ENST00000359195.3:c.1105G>A	p.Asp369Asn	p.D369N	ENST00000359195	NM_002649.2	369	Gat/Aat																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923133	39923133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	122	822	0	ENST00000378444.4:c.3575C>T	p.Thr1192Ile	p.T1192I	ENST00000378444	NM_001123385.1	1192	aCc/aTc																																																																															
RET	5979	MSKCC	GRCh37	10	43606899	43606909	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTGGAGGGG	CAGTGGAGGGG	-			P-0039941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	293	1049	0	ENST00000355710.3:c.1508_1518del	p.Thr503IlefsTer23	p.T503Ifs*23	ENST00000355710	NM_020975.4	503	aCAGTGGAGGGG/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578291	7578303	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TAAGAGCAATCAG	TAAGAGCAATCAG	-			P-0039941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	258	746	0	ENST00000269305.4:c.560-14_560-2del		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
RPTOR	57521	MSKCC	GRCh37	17	78519485	78519485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	121	597	0	ENST00000306801.3:c.56C>T	p.Ala19Val	p.A19V	ENST00000306801	NM_020761.2	19	gCt/gTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105585	11105586	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	200	844	0	ENST00000344626.4:c.1503dup	p.Lys502GlnfsTer32	p.K502Qfs*32	ENST00000344626	NM_003072.3	501	acc/aCcc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332847	152332847	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	49	562	0	ENST00000206249.3:c.1153G>T	p.Glu385Ter	p.E385*	ENST00000206249	NM_000125.3	385	Gag/Tag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270593	98270595	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs756897237		P-0039945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	10	93	0	ENST00000331920.6:c.49_51del	p.Gly17del	p.G17del	ENST00000331920	NM_000264.3	17	GGC/-																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0040059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	891	490	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0040059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	24	571	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
ATM	472	MSKCC	GRCh37	11	108115573	108115573	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0040059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	65	326	0	ENST00000278616.4:c.721A>T	p.Lys241Ter	p.K241*	ENST00000278616	NM_000051.3	241	Aag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0040133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	121	465	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913324		P-0040133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	220	743	1	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602334	10602334	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	230	777	0	ENST00000171111.5:c.1244G>T	p.Arg415Leu	p.R415L	ENST00000171111	NM_203500.1	415	cGc/cTc																																																																															
RET	5979	MSKCC	GRCh37	10	43615093	43615093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	260	728	0	ENST00000355710.3:c.2507G>T	p.Ser836Ile	p.S836I	ENST00000355710	NM_020975.4	836	aGc/aTc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202473	67202487	+	inframe_deletion	In_Frame_Del	DEL	TCCCCTTTTGAGGGG	TCCCCTTTTGAGGGG	-			P-0040133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	88	750	0	ENST00000312629.5:c.1283_1297del	p.Ser428_Gly432del	p.S428_G432del	ENST00000312629	NM_003952.2	428	TCCCCTTTTGAGGGG/-																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687172	37687172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	252	607	0	ENST00000447079.4:c.4076G>T	p.Gly1359Val	p.G1359V	ENST00000447079	NM_015083.1	1359	gGt/gTt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371574	225371575	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CT			P-0040133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	35	376	0	ENST00000264414.4:c.1028_1029dup	p.Gly344ArgfsTer6	p.G344Rfs*6	ENST00000264414	NM_003590.4	343	-/AG																																																																															
LYN	4067	MSKCC	GRCh37	8	56866542	56866542	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0040133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	123	682	0	ENST00000519728.1:c.789G>T	p.Met263Ile	p.M263I	ENST00000519728	NM_002350.3	263	atG/atT																																																																															
PREX2	80243	MSKCC	GRCh37	8	68939459	68939459	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0040133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	26	362	0	ENST00000288368.4:c.444C>A	p.Asn148Lys	p.N148K	ENST00000288368	NM_024870.2	148	aaC/aaA																																																																															
TEK	7010	MSKCC	GRCh37	9	27169566	27169566	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	199	646	0	ENST00000380036.4:c.567C>A	p.Tyr189Ter	p.Y189*	ENST00000380036	NM_000459.3	189	taC/taA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0040135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	227	459	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs864622237		P-0040135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	163	605	0	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249022	55249022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs567477136		P-0040163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	110	543	0	ENST00000275493.2:c.2320G>A	p.Val774Met	p.V774M	ENST00000275493	NM_005228.3	774	Gtg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0040163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	110	503	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133263850	133263850	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	18	270	0	ENST00000320574.5:c.52G>C	p.Glu18Gln	p.E18Q	ENST00000320574	NM_006231.2	18	Gag/Cag																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563094	21563094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	43	801	0	ENST00000382592.4:c.825C>G	p.Phe275Leu	p.F275L	ENST00000382592	NM_014572.2	275	ttC/ttG																																																																															
CBFB	865	MSKCC	GRCh37	16	67063657	67063657	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	44	349	0	ENST00000412916.2:c.106C>G	p.Pro36Ala	p.P36A	ENST00000412916		36	Ccc/Gcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0040258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	105	400	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604706	48604706	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	33	492	0	ENST00000342988.3:c.1528G>T	p.Gly510Ter	p.G510*	ENST00000342988	NM_005359.5	510	Gga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108143264	108143264	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	39	270	0	ENST00000278616.4:c.3083T>C	p.Leu1028Pro	p.L1028P	ENST00000278616	NM_000051.3	1028	cTa/cCa																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195433	102195433	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0040258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	71	387	0	ENST00000263464.3:c.193A>T	p.Lys65Ter	p.K65*	ENST00000263464	NM_001165.4	65	Aaa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0040295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	69	397	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576870	7576870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs876659384		P-0040295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	38	607	1	ENST00000269305.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000269305	NM_001126112.2	326	Gaa/Taa																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363483	40363483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	83	586	0	ENST00000397332.2:c.746C>T	p.Pro249Leu	p.P249L	ENST00000397332	NM_001033082.2	249	cCt/cTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0040360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	183	380	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs985033810		P-0040360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	112	432	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692835	89692835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	25	130	1	ENST00000371953.3:c.319G>T	p.Asp107Tyr	p.D107Y	ENST00000371953	NM_000314.4	107	Gat/Tat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0040370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	44	275	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88677046	88677047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	89	239	0	ENST00000372037.3:c.832dup	p.Tyr278LeufsTer9	p.Y278Lfs*9	ENST00000372037	NM_004329.2	277	-/T																																																																															
ATM	472	MSKCC	GRCh37	11	108173746	108173746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	32	153	0	ENST00000278616.4:c.5486C>T	p.Pro1829Leu	p.P1829L	ENST00000278616	NM_000051.3	1829	cCa/cTa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040679	47040679	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0040370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	140	523	0	ENST00000329236.7:c.1080C>G	p.Tyr360Ter	p.Y360*	ENST00000329236	NM_001204466.1	360	taC/taG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0040463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	346	692	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
MED12	9968	MSKCC	GRCh37	X	70357061	70357061	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763700798		P-0040463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	216	879	0	ENST00000374080.3:c.5576G>A	p.Arg1859His	p.R1859H	ENST00000374080		1859	cGt/cAt																																																																															
MSI1	4440	MSKCC	GRCh37	12	120805885	120805885	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	201	801	0	ENST00000257552.2:c.193T>C	p.Phe65Leu	p.F65L	ENST00000257552	NM_002442.3	65	Ttc/Ctc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240330	41240330	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	98	383	0	ENST00000379561.5:c.20del	p.Val7GlyfsTer65	p.V7Gfs*65	ENST00000379561	NM_002015.3	7	gTg/gg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152238	11152238	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0040463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	132	519	0	ENST00000344626.4:c.4424+2T>G		p.X1475_splice	ENST00000344626	NM_003072.3	1475																																																																																
APC	324	MSKCC	GRCh37	5	112175212	112175212	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	30	222	0	ENST00000257430.4:c.3921A>G	p.Ile1307Met	p.I1307M	ENST00000257430	NM_000038.5	1307	atA/atG																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609837	117609837	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1167721609		P-0040463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	111	556	0	ENST00000368508.3:c.6862T>C	p.Ser2288Pro	p.S2288P	ENST00000368508	NM_002944.2	2288	Tct/Cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0040472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	244	703	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	126	394	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057850	27057850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	230	777	1	ENST00000324856.7:c.1558C>T	p.Gln520Ter	p.Q520*	ENST00000324856	NM_006015.4	520	Cag/Tag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435129	110435129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs533420684		P-0040472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	228	589	1	ENST00000375856.3:c.3272C>T	p.Pro1091Leu	p.P1091L	ENST00000375856	NM_003749.2	1091	cCg/cTg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28605607	28605607	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0040472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	134	500	2	ENST00000253063.3:c.1212-1G>T		p.X404_splice	ENST00000253063	NM_031459.4	404																																																																																
PGR	5241	MSKCC	GRCh37	11	100998679	100998679	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1028866384		P-0040472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	146	819	0	ENST00000325455.5:c.1123C>T	p.Pro375Ser	p.P375S	ENST00000325455	NM_001202474.3	375	Cct/Tct																																																																															
ATM	472	MSKCC	GRCh37	11	108098501	108098501	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0040472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	47	258	0	ENST00000278616.4:c.73-2A>T		p.X25_splice	ENST00000278616	NM_000051.3	25																																																																																
CYLD	1540	MSKCC	GRCh37	16	50816326	50816326	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	65	400	0	ENST00000398568.2:c.1766A>G	p.Lys589Arg	p.K589R	ENST00000398568	NM_001042412.1	589	aAa/aGa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827246	72827246	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	99	607	0	ENST00000268489.5:c.9335C>A	p.Pro3112His	p.P3112H	ENST00000268489	NM_006885.3	3112	cCt/cAt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554461	63554483	+	frameshift_variant	Frame_Shift_Del	DEL	TAAGCACCGTCTTGATCGCCCAA	TAAGCACCGTCTTGATCGCCCAA	-			P-0040472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	142	637	2	ENST00000307078.5:c.256_278del	p.Leu86ProfsTer47	p.L86Pfs*47	ENST00000307078	NM_004655.3	86	TTGGGCGATCAAGACGGTGCTTAc/c																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643840	52643840	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	64	512	1	ENST00000394830.3:c.2056A>G	p.Arg686Gly	p.R686G	ENST00000394830	NM_018313.4	686	Agg/Ggg																																																																															
KDR	3791	MSKCC	GRCh37	4	55955876	55955876	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	107	449	0	ENST00000263923.4:c.3286T>A	p.Trp1096Arg	p.W1096R	ENST00000263923	NM_002253.2	1096	Tgg/Agg																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250681	26250681	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	136	616	0	ENST00000446824.2:c.153A>C	p.Glu51Asp	p.E51D	ENST00000446824	NM_021018.2	51	gaA/gaC																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29207713	29207713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	92	318	0	ENST00000240100.2:c.83C>T	p.Ala28Val	p.A28V	ENST00000240100	NM_001394.6	28	gCg/gTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69032465	69032465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	240	728	1	ENST00000288368.4:c.3539C>T	p.Ala1180Val	p.A1180V	ENST00000288368	NM_024870.2	1180	gCt/gTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389246	8389246	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	122	511	0	ENST00000356435.5:c.4372G>T	p.Glu1458Ter	p.E1458*	ENST00000356435		1458	Gaa/Taa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933577	39933577	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	160	660	0	ENST00000378444.4:c.1022C>G	p.Pro341Arg	p.P341R	ENST00000378444	NM_001123385.1	341	cCc/cGc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239900	53239900	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	77	677	0	ENST00000375401.3:c.1541A>G	p.His514Arg	p.H514R	ENST00000375401	NM_004187.3	514	cAt/cGt																																																																															
AR	367	MSKCC	GRCh37	X	66766361	66766361	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	39	77	0	ENST00000374690.3:c.1373G>C	p.Gly458Ala	p.G458A	ENST00000374690	NM_000044.3	458	gGc/gCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249012	55249013	+	inframe_insertion	In_Frame_Ins	INS	-	-	AACCCCCAT			P-0040491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	35	625	0	ENST00000275493.2:c.2318_2319insTAACCCCCA	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	-/AACCCCCAT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	271	726	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199958	138199958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	164	499	1	ENST00000237289.4:c.1376C>T	p.Ser459Leu	p.S459L	ENST00000237289	NM_001270507.1	459	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	97	523	0	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437578	56437578	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs746762909		P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	190	629	0	ENST00000407977.2:c.884A>G	p.His295Arg	p.H295R	ENST00000407977		295	cAt/cGt																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794899	242794899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	194	796	1	ENST00000334409.5:c.310C>T	p.Arg104Cys	p.R104C	ENST00000334409	NM_005018.2	104	Cgt/Tgt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323262	31323262	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77665001		P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	75	448	1	ENST00000412585.2:c.727C>T	p.Arg243Trp	p.R243W	ENST00000412585	NM_005514.6	243	Cgg/Tgg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162749947	162749947	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	56	458	0	ENST00000367921.3:c.2479C>A	p.Leu827Met	p.L827M	ENST00000367921	NM_006182.2	827	Ctg/Atg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56493506	56493506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	70	475	0	ENST00000267101.3:c.2914C>T	p.Pro972Ser	p.P972S	ENST00000267101	NM_001982.3	972	Cca/Tca																																																																															
RAD51	5888	MSKCC	GRCh37	15	41022147	41022149	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	70	590	0	ENST00000267868.3:c.874_876del	p.Ile292del	p.I292del	ENST00000267868	NM_002875.4	291	ATC/-																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229449	36229449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	80	474	0	ENST00000222270.7:c.8139C>A	p.Phe2713Leu	p.F2713L	ENST00000222270	NM_014727.1	2713	ttC/ttA																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143159118	143159118	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	27	419	0	ENST00000262992.4:c.735C>G	p.Asp245Glu	p.D245E	ENST00000262992	NM_001101669.1	245	gaC/gaG																																																																															
AGO2	27161	MSKCC	GRCh37	8	141572667	141572667	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	340	650	0	ENST00000220592.5:c.403G>C	p.Val135Leu	p.V135L	ENST00000220592	NM_012154.3	135	Gtg/Ctg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44894180	44894180	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	46	460	0	ENST00000377967.4:c.569T>G	p.Phe190Cys	p.F190C	ENST00000377967	NM_021140.2	190	tTt/tGt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73336065	73336065	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040732-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			123	71	271	0	ENST00000377767.4:c.2338A>G	p.Arg780Gly	p.R780G	ENST00000377767	NM_014953.3	780	Aga/Gga																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033492	48033492	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs972387746		P-0040732-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			325	112	570	0	ENST00000234420.5:c.3796C>T	p.His1266Tyr	p.H1266Y	ENST00000234420	NM_000179.2	1266	Cat/Tat																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143130069	143130069	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040732-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			224	76	464	0	ENST00000262992.4:c.947C>A	p.Thr316Lys	p.T316K	ENST00000262992	NM_001101669.1	316	aCa/aAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0040818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	30	460	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044907	47044907	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	121	542	1	ENST00000329236.7:c.2003del	p.Gly668AlafsTer56	p.G668Afs*56	ENST00000329236	NM_001204466.1	667	Ggg/gg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485953	8485953	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs763256154		P-0040818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	56	467	0	ENST00000356435.5:c.2864C>A	p.Thr955Asn	p.T955N	ENST00000356435		955	aCc/aAc																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128434849	128434849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	54	558	0	ENST00000265960.3:c.5C>T	p.Ala2Val	p.A2V	ENST00000265960	NM_001006617.1	2	gCc/gTc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123200023	123200023	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0040830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	18	212	0	ENST00000218089.9:c.2097-2A>C		p.X699_splice	ENST00000218089	NM_001042749.1	699																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			611	211	778	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
MED12	9968	MSKCC	GRCh37	X	70349262	70349262	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	228	461	0	ENST00000374080.3:c.3674A>T	p.Lys1225Met	p.K1225M	ENST00000374080		1225	aAg/aTg																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074381	8074381	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			419	97	347	0	ENST00000377482.5:c.278C>G	p.Pro93Arg	p.P93R	ENST00000377482	NM_018948.3	93	cCc/cGc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254662	16254662	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			769	84	485	0	ENST00000375759.3:c.1927C>G	p.Pro643Ala	p.P643A	ENST00000375759	NM_015001.2	643	Cct/Gct																																																																															
PGR	5241	MSKCC	GRCh37	11	100922208	100922208	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1205217316		P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	109	273	0	ENST00000325455.5:c.2304C>A	p.Tyr768Ter	p.Y768*	ENST00000325455	NM_001202474.3	768	taC/taA																																																																															
ATM	472	MSKCC	GRCh37	11	108164071	108164071	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1448017467		P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			184	41	66	0	ENST00000278616.4:c.4643A>G	p.Asp1548Gly	p.D1548G	ENST00000278616	NM_000051.3	1548	gAt/gGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420654	49420655	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			717	85	675	0	ENST00000301067.7:c.15094_15095delinsCT	p.Cys5032Leu	p.C5032L	ENST00000301067	NM_003482.3	5032	TGc/CTc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465443	99465443	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	164	523	0	ENST00000268035.6:c.2268C>A	p.Asn756Lys	p.N756K	ENST00000268035	NM_000875.3	756	aaC/aaA																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786708	3786708	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			691	99	647	0	ENST00000262367.5:c.4503G>C	p.Glu1501Asp	p.E1501D	ENST00000262367	NM_004380.2	1501	gaG/gaC																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645012	67645012	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			567	198	549	0	ENST00000264010.4:c.277A>T	p.Thr93Ser	p.T93S	ENST00000264010	NM_006565.3	93	Acc/Tcc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175854	24175854	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			653	371	653	0	ENST00000263121.7:c.1082T>C	p.Met361Thr	p.M361T	ENST00000263121	NM_003073.3	361	aTg/aCg																																																																															
KIT	3815	MSKCC	GRCh37	4	55593477	55593477	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			332	26	253	0	ENST00000288135.5:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000288135	NM_000222.2	545	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112155028	112155028	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			377	126	391	0	ENST00000257430.4:c.1299G>T	p.Gln433His	p.Q433H	ENST00000257430	NM_000038.5	433	caG/caT																																																																															
NSD1	64324	MSKCC	GRCh37	5	176694562	176694562	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			253	98	243	0	ENST00000439151.2:c.5147-1G>A		p.X1716_splice	ENST00000439151	NM_022455.4	1716																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151873545	151873545	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	141	497	0	ENST00000262189.6:c.8993C>A	p.Ser2998Ter	p.S2998*	ENST00000262189	NM_170606.2	2998	tCa/tAa																																																																															
LYN	4067	MSKCC	GRCh37	8	56860277	56860278	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AT			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			263	181	332	0	ENST00000519728.1:c.279_280delinsAT	p.Glu94Ter	p.E94*	ENST00000519728	NM_002350.3	93	ctGGag/ctATag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223022	53223022	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	184	377	0	ENST00000375401.3:c.4050A>C	p.Leu1350Phe	p.L1350F	ENST00000375401	NM_004187.3	1350	ttA/ttC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0040935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	235	587	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255141	16255142	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0040935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	83	635	2	ENST00000375759.3:c.2417_2418dup	p.Arg807AspfsTer3	p.R807Dfs*3	ENST00000375759	NM_015001.2	802	-/GA																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807991	3807991	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	108	628	0	ENST00000262367.5:c.3428A>G	p.Asp1143Gly	p.D1143G	ENST00000262367	NM_004380.2	1143	gAc/gGc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682204	37682204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	205	763	0	ENST00000447079.4:c.3395C>T	p.Pro1132Leu	p.P1132L	ENST00000447079	NM_015083.1	1132	cCt/cTt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610176	81610176	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	65	531	1	ENST00000298171.2:c.1774G>T	p.Val592Phe	p.V592F	ENST00000298171	NM_000369.2	592	Gtt/Ttt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878113	151878113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764593264		P-0040935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	122	614	0	ENST00000262189.6:c.6832C>T	p.Pro2278Ser	p.P2278S	ENST00000262189	NM_170606.2	2278	Ccc/Tcc																																																																															
ARAF	369	MSKCC	GRCh37	X	47428415	47428415	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1183909266		P-0040935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	350	810	1	ENST00000377045.4:c.1283G>T	p.Arg428Leu	p.R428L	ENST00000377045	NM_001654.4	428	cGa/cTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	154	406	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	159	435	0				ENST00000310581	NM_198253.2																																																																																	
STK11	6794	MSKCC	GRCh37	19	1222983	1222983	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs398123406		P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	154	569	0	ENST00000326873.7:c.921-1G>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11098422	11098422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	221	544	0	ENST00000344626.4:c.940G>T	p.Ala314Ser	p.A314S	ENST00000344626	NM_003072.3	314	Gcg/Tcg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404560	8404561	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	159	244	0	ENST00000356435.5:c.4186dup	p.Arg1396ProfsTer14	p.R1396Pfs*14	ENST00000356435		1396	cgg/cCgg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195562	102195562	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	166	501	0	ENST00000263464.3:c.322A>T	p.Thr108Ser	p.T108S	ENST00000263464	NM_001165.4	108	Acc/Tcc																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439695	51439695	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	187	402	0	ENST00000262662.1:c.260A>T	p.Gln87Leu	p.Q87L	ENST00000262662		87	cAg/cTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332103	70332103	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	35	181	0	ENST00000373644.4:c.8G>T	p.Arg3Leu	p.R3L	ENST00000373644	NM_030625.2	3	cGa/cTa																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112760302	112760302	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	49	297	0	ENST00000369452.4:c.971A>T	p.Glu324Val	p.E324V	ENST00000369452	NM_007373.3	324	gAg/gTg																																																																															
EED	8726	MSKCC	GRCh37	11	85956344	85956344	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1459981515		P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	100	318	0	ENST00000263360.6:c.73A>G	p.Ser25Gly	p.S25G	ENST00000263360	NM_003797.3	25	Agt/Ggt																																																																															
ATM	472	MSKCC	GRCh37	11	108159822	108159822	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	46	124	0	ENST00000278616.4:c.4228A>T	p.Lys1410Ter	p.K1410*	ENST00000278616	NM_000051.3	1410	Aaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108206674	108206674	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	71	320	0	ENST00000278616.4:c.8254A>T	p.Ile2752Phe	p.I2752F	ENST00000278616	NM_000051.3	2752	Atc/Ttc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483885	88483885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	110	738	0	ENST00000360948.2:c.1685C>A	p.Pro562Gln	p.P562Q	ENST00000360948	NM_001012338.2	562	cCg/cAg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40447652	40447652	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs762072134		P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	159	566	0	ENST00000345506.4:c.391G>T	p.Gly131Trp	p.G131W	ENST00000345506	NM_003152.3	131	Ggg/Tgg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221215	1221215	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	109	750	0	ENST00000326873.7:c.738C>A	p.Tyr246Ter	p.Y246*	ENST00000326873	NM_000455.4	246	taC/taA																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2199918	2199918	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	234	733	0	ENST00000398665.3:c.687G>T	p.Arg229Ser	p.R229S	ENST00000398665	NM_032482.2	229	agG/agT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143991	11143991	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	118	580	0	ENST00000344626.4:c.3572A>T	p.His1191Leu	p.H1191L	ENST00000344626	NM_003072.3	1191	cAc/cTc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367901	15367902	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	215	930	0	ENST00000263377.2:c.1424dup	p.Pro476SerfsTer17	p.P476Sfs*17	ENST00000263377	NM_058243.2	475	cct/ccCt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52728969	52728969	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	172	500	2	ENST00000322088.6:c.1662-1G>A		p.X554_splice	ENST00000322088	NM_014225.5	554																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89480313	89480313	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	75	240	0	ENST00000336596.2:c.2150A>T	p.Gln717Leu	p.Q717L	ENST00000336596	NM_005233.5	717	cAg/cTg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523153	176523153	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	118	747	1	ENST00000292408.4:c.1917C>A	p.His639Gln	p.H639Q	ENST00000292408	NM_213647.1	639	caC/caA																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405885	157405885	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	38	430	0	ENST00000346085.5:c.2127A>C	p.Gln709His	p.Q709H	ENST00000346085	NM_020732.3	709	caA/caC																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508207	106508207	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	71	289	0	ENST00000359195.3:c.202del	p.Glu68SerfsTer3	p.E68Sfs*3	ENST00000359195	NM_002649.2	67	gtG/gt																																																																															
SMO	6608	MSKCC	GRCh37	7	128852036	128852036	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	350	716	0	ENST00000249373.3:c.2108G>T	p.Arg703Leu	p.R703L	ENST00000249373	NM_005631.4	703	cGa/cTa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980586	70980586	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	672	649	0	ENST00000276594.2:c.791C>G	p.Pro264Arg	p.P264R	ENST00000276594	NM_024504.3	264	cCa/cGa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0041174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	74	476	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	116	850	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0041179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	20	390	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1177782647		P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	472	709	3	ENST00000326873.7:c.842dup	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913343		P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	240	744	1	ENST00000269305.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000269305	NM_001126112.2	273	Cgt/Agt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187966	32187966	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	479	721	1	ENST00000375023.3:c.1255C>A	p.Leu419Met	p.L419M	ENST00000375023	NM_004557.3	419	Ctg/Atg																																																																															
STK40	83931	MSKCC	GRCh37	1	36809525	36809525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	312	830	0	ENST00000373129.3:c.940G>A	p.Asp314Asn	p.D314N	ENST00000373129	NM_032017.1	314	Gac/Aac																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949317	71949317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	512	880	0	ENST00000298229.2:c.3697G>A	p.Glu1233Lys	p.E1233K	ENST00000298229	NM_001567.3	1233	Gag/Aag																																																																															
RB1	5925	MSKCC	GRCh37	13	49039133	49039133	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	89	156	1	ENST00000267163.4:c.2212-1G>T		p.X738_splice	ENST00000267163	NM_000321.2	738																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602822	10602823	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	643	903	2	ENST00000171111.5:c.755_756delinsTT	p.Trp252Phe	p.W252F	ENST00000171111	NM_203500.1	252	tGG/tTT																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902528	1902528	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	553	699	2	ENST00000382895.3:c.147C>G	p.Ser49Arg	p.S49R	ENST00000382895	NM_133330.2	49	agC/agG																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139799	55139799	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	365	626	2	ENST00000257290.5:c.1460G>T	p.Arg487Leu	p.R487L	ENST00000257290	NM_006206.4	487	cGt/cTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629775	187629775	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	406	724	0	ENST00000441802.2:c.1207A>T	p.Lys403Ter	p.K403*	ENST00000441802	NM_005245.3	403	Aaa/Taa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31493334	31493335	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	198	295	0	ENST00000344624.3:c.1821dup	p.Ala608CysfsTer12	p.A608Cfs*12	ENST00000344624		607	-/T																																																																															
MSH3	4437	MSKCC	GRCh37	5	79961079	79961079	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	260	494	2	ENST00000265081.6:c.476G>T	p.Arg159Ile	p.R159I	ENST00000265081	NM_002439.4	159	aGa/aTa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944320	131944320	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	122	266	0	ENST00000265335.6:c.2732A>T	p.Gln911Leu	p.Q911L	ENST00000265335		911	cAg/cTg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459696	149459696	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	483	800	2	ENST00000286301.3:c.511C>G	p.Gln171Glu	p.Q171E	ENST00000286301	NM_005211.3	171	Cag/Gag																																																																															
JAK2	3717	MSKCC	GRCh37	9	5022115	5022116	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	106	495	0	ENST00000381652.3:c.129_130del	p.Tyr44ProfsTer7	p.Y44Pfs*7	ENST00000381652	NM_004972.3	43	cTT/c																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1331504	1331504	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	160	455	0	ENST00000381566.1:c.24G>C	p.Trp8Cys	p.W8C	ENST00000381566		8	tgG/tgC																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851083	63851083	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	219	656	0	ENST00000279873.7:c.1861G>C	p.Asp621His	p.D621H	ENST00000279873	NM_032199.2	621	Gat/Cat																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285880	46285880	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0041219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	276	456	0	ENST00000334344.6:c.5147+1G>A		p.X1716_splice	ENST00000334344	NM_152641.2	1716																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56482607	56482607	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	52	716	0	ENST00000267101.3:c.1064C>G	p.Thr355Ser	p.T355S	ENST00000267101	NM_001982.3	355	aCc/aGc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954022	32954023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1305653361		P-0041219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	207	490	6	ENST00000380152.3:c.9097dup	p.Thr3033AsnfsTer11	p.T3033Nfs*11	ENST00000380152		3030	aca/acAa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178129266	178129267	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	CT			P-0041219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	128	348	0	ENST00000397062.3:c.38_39delinsAG	p.Ser13Ter	p.S13*	ENST00000397062	NM_006164.4	13	tCC/tAG																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178129267	178129267	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	128	344	0	ENST00000397062.3:c.38C>A	p.Ser13Tyr	p.S13Y	ENST00000397062	NM_006164.4	13	tCc/tAc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664727	138664727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	81	167	0	ENST00000330315.3:c.838C>T	p.Pro280Ser	p.P280S	ENST00000330315	NM_023067.3	280	Ccg/Tcg																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26021065	26021079	+	inframe_deletion	In_Frame_Del	DEL	GCGCGTCACTATCAT	GCGCGTCACTATCAT	-			P-0041219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	97	536	0	ENST00000357647.3:c.350_364del	p.Arg117_Met121del	p.R117_M121del	ENST00000357647	NM_003529.2	116	aaGCGCGTCACTATCATg/aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0041219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	457	532	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423612	88423612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	149	510	0	ENST00000360948.2:c.2223C>A	p.Ser741Arg	p.S741R	ENST00000360948	NM_001012338.2	741	agC/agA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578448	7578448	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1064795691		P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	916	700	0	ENST00000269305.4:c.482C>A	p.Ala161Asp	p.A161D	ENST00000269305	NM_001126112.2	161	gCc/gAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453145	140453145	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs121913366		P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	332	345	0	ENST00000288602.6:c.1790T>G	p.Leu597Arg	p.L597R	ENST00000288602	NM_004333.4	597	cTa/cGa																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797729	45797729	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776362892		P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	263	662	0	ENST00000372115.3:c.921del	p.Ser308AlafsTer86	p.S308Afs*86	ENST00000372115	NM_001048171.1	307	ggG/gg																																																																															
TET1	80312	MSKCC	GRCh37	10	70450874	70450874	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	181	500	0	ENST00000373644.4:c.5714G>T	p.Gly1905Val	p.G1905V	ENST00000373644	NM_030625.2	1905	gGc/gTc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861808	57861808	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs768582577		P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	255	588	0	ENST00000228682.2:c.1109C>A	p.Thr370Asn	p.T370N	ENST00000228682	NM_005269.2	370	aCc/aAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041751	29041751	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	119	268	0	ENST00000282397.4:c.68C>G	p.Ser23Cys	p.S23C	ENST00000282397	NM_002019.4	23	tCt/tGt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220375	1220377	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	421	602	0	ENST00000326873.7:c.470_472del	p.Phe157del	p.F157del	ENST00000326873	NM_000455.4	156	taCTTc/tac																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47607036	47607036	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	460	549	0	ENST00000263735.4:c.786G>T	p.Gln262His	p.Q262H	ENST00000263735	NM_002354.2	262	caG/caT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385101	41385101	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	708	608	0	ENST00000373198.4:c.859+1G>C		p.X287_splice	ENST00000373198	NM_133170.3	287																																																																																
INPP4B	8821	MSKCC	GRCh37	4	142949952	142949952	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	187	494	0	ENST00000262992.4:c.2758G>T	p.Gly920Ter	p.G920*	ENST00000262992	NM_001101669.1	920	Gga/Tga																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032197	26032197	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	132	344	0	ENST00000244661.2:c.92C>A	p.Pro31Gln	p.P31Q	ENST00000244661	NM_003537.3	31	cCg/cAg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553599	106553599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	146	383	1	ENST00000369096.4:c.1564G>T	p.Ala522Ser	p.A522S	ENST00000369096	NM_001198.3	522	Gcc/Tcc																																																																															
SMO	6608	MSKCC	GRCh37	7	128843381	128843381	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	505	602	0	ENST00000249373.3:c.488G>T	p.Trp163Leu	p.W163L	ENST00000249373	NM_005631.4	163	tGg/tTg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70971050	70971050	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	462	566	1	ENST00000276594.2:c.1211G>C	p.Arg404Thr	p.R404T	ENST00000276594	NM_024504.3	404	aGa/aCa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521514	8521514	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	364	532	0	ENST00000356435.5:c.724C>A	p.Pro242Thr	p.P242T	ENST00000356435		242	Ccc/Acc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87549106	87549106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	339	444	0	ENST00000277120.3:c.1663G>T	p.Val555Phe	p.V555F	ENST00000277120		555	Gtt/Ttt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220502	1220502	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T	rs121913317		P-0041251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	240	704	0	ENST00000326873.7:c.595G>T	p.Glu199Ter	p.E199*	ENST00000326873	NM_000455.4	199	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602290	10602290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	333	755	0	ENST00000171111.5:c.1288G>T	p.Gly430Cys	p.G430C	ENST00000171111	NM_203500.1	430	Ggc/Tgc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519963		P-0041251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	67	279	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577071	7577072	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0041251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	159	780	0	ENST00000269305.4:c.866_867del	p.Leu289ProfsTer16	p.L289Pfs*16	ENST00000269305	NM_001126112.2	289	cTC/c																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3832774	3832774	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	130	596	0	ENST00000262367.5:c.1484A>C	p.Gln495Pro	p.Q495P	ENST00000262367	NM_004380.2	495	cAg/cCg																																																																															
CIC	23152	MSKCC	GRCh37	19	42797816	42797816	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	160	744	1	ENST00000575354.2:c.3870del	p.Thr1291LeufsTer11	p.T1291Lfs*11	ENST00000575354	NM_015125.3	1290	Ccc/cc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46583373	46583373	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs181240421		P-0041251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	146	588	0	ENST00000263734.3:c.301G>A	p.Val101Met	p.V101M	ENST00000263734	NM_001430.4	101	Gtg/Atg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106536104	106536104	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	35	338	0	ENST00000369096.4:c.71T>G	p.Val24Gly	p.V24G	ENST00000369096	NM_001198.3	24	gTg/gGg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486095	8486095	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	92	603	0	ENST00000356435.5:c.2722G>C	p.Val908Leu	p.V908L	ENST00000356435		908	Gtg/Ctg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87359948	87359948	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	98	457	0	ENST00000277120.3:c.1256C>A	p.Ser419Tyr	p.S419Y	ENST00000277120		419	tCc/tAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0041416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	201	468	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198257892	198257892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	84	428	0	ENST00000335508.6:c.3560C>T	p.Thr1187Met	p.T1187M	ENST00000335508	NM_012433.2	1187	aCg/aTg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937198	36937198	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	133	778	0	ENST00000361632.4:c.1121C>A	p.Ser374Tyr	p.S374Y	ENST00000361632		374	tCt/tAt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	463390	463390	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs774502944		P-0041416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	61	295	0	ENST00000399788.2:c.881A>G	p.Tyr294Cys	p.Y294C	ENST00000399788	NM_001042603.1	294	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574006	7574007	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0041416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	217	793	0	ENST00000269305.4:c.1020dup	p.Phe341ValfsTer6	p.F341Vfs*6	ENST00000269305	NM_001126112.2	340	-/G																																																																															
STK11	6794	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs137853076		P-0041459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	68	595	0	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0041459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	82	490	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
BRAF	673	MSKCC	GRCh37	7	140481417	140481417	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913348		P-0041459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	59	354	0	ENST00000288602.6:c.1391G>T	p.Gly464Val	p.G464V	ENST00000288602	NM_004333.4	464	gGa/gTa																																																																															
LMO1	4004	MSKCC	GRCh37	11	8248536	8248536	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	60	439	0	ENST00000335790.3:c.351G>T	p.Gln117His	p.Q117H	ENST00000335790	NM_002315.2	117	caG/caT																																																																															
PGR	5241	MSKCC	GRCh37	11	100933355	100933355	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	34	418	0	ENST00000325455.5:c.2035C>G	p.Gln679Glu	p.Q679E	ENST00000325455	NM_001202474.3	679	Caa/Gaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187531142	187531142	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	58	257	0	ENST00000441802.2:c.9881A>T	p.Asp3294Val	p.D3294V	ENST00000441802	NM_005245.3	3294	gAt/gTt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180040053	180040053	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	55	639	0	ENST00000261937.6:c.3389A>T	p.Asp1130Val	p.D1130V	ENST00000261937	NM_182925.4	1130	gAc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	436	580	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178937461	178937461	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776503460		P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	194	405	0	ENST00000263967.3:c.1849C>T	p.Arg617Trp	p.R617W	ENST00000263967	NM_006218.2	617	Cgg/Tgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600005	10600005	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	396	574	0	ENST00000171111.5:c.1571del	p.Gly524AlafsTer8	p.G524Afs*8	ENST00000171111	NM_203500.1	524	gGc/gc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436088	49436088	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	305	447	0	ENST00000301067.7:c.5893G>T	p.Glu1965Ter	p.E1965*	ENST00000301067	NM_003482.3	1965	Gaa/Taa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956704	93956704	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	171	282	0	ENST00000369303.4:c.2533-1G>T		p.X845_splice	ENST00000369303	NM_004440.3	845																																																																																
JAK1	3716	MSKCC	GRCh37	1	65335015	65335015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	279	396	0	ENST00000342505.4:c.626C>T	p.Pro209Leu	p.P209L	ENST00000342505	NM_002227.2	209	cCa/cTa																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206649539	206649539	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	178	453	0	ENST00000367120.3:c.374A>T	p.His125Leu	p.H125L	ENST00000367120	NM_014002.3	125	cAc/cTc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625453	69625453	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	362	522	0	ENST00000334134.2:c.340G>T	p.Glu114Ter	p.E114*	ENST00000334134	NM_005247.2	114	Gag/Tag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18446897	18446897	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	375	313	0	ENST00000266497.5:c.982C>A	p.Leu328Ile	p.L328I	ENST00000266497		328	Ctc/Atc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420788	49420788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	352	543	0	ENST00000301067.7:c.14961G>T	p.Trp4987Cys	p.W4987C	ENST00000301067	NM_003482.3	4987	tgG/tgT																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589802	28589802	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	293	473	0	ENST00000241453.7:c.2578C>A	p.Leu860Met	p.L860M	ENST00000241453	NM_004119.2	860	Ctg/Atg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437173	110437173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	21	28	0	ENST00000375856.3:c.1228G>A	p.Gly410Ser	p.G410S	ENST00000375856	NM_003749.2	410	Ggc/Agc																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40682130	40682130	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	288	388	0	ENST00000249776.8:c.685G>T	p.Ala229Ser	p.A229S	ENST00000249776	NM_033286.3	229	Gct/Tct																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43762141	43762141	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1471395709		P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	476	623	0	ENST00000382044.4:c.1304C>T	p.Pro435Leu	p.P435L	ENST00000382044	NM_001141980.1	435	cCa/cTa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778672	3778672	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs200780672		P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	387	560	0	ENST00000262367.5:c.6376G>T	p.Gly2126Cys	p.G2126C	ENST00000262367	NM_004380.2	2126	Ggc/Tgc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783985	50783985	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	307	569	0	ENST00000398568.2:c.376G>T	p.Asp126Tyr	p.D126Y	ENST00000398568	NM_001042412.1	126	Gac/Tac																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347699	89347699	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	317	569	0	ENST00000301030.4:c.5251G>T	p.Ala1751Ser	p.A1751S	ENST00000301030	NM_001256183.1	1751	Gct/Tct																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40441469	40441469	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	364	437	0	ENST00000345506.4:c.40G>C	p.Ala14Pro	p.A14P	ENST00000345506	NM_003152.3	14	Gcg/Ccg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453351	40453351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	531	744	1	ENST00000345506.4:c.1048G>T	p.Ala350Ser	p.A350S	ENST00000345506	NM_003152.3	350	Gcc/Tcc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245390	41245390	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80356875		P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	427	545	0	ENST00000357654.3:c.2158G>A	p.Glu720Lys	p.E720K	ENST00000357654	NM_007294.3	720	Gaa/Aaa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117643	70117644	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	361	505	2	ENST00000245479.2:c.111_112delinsAT	p.Gly38Cys	p.G38C	ENST00000245479	NM_000346.3	37	tcGGgc/tcATgc																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47602386	47602386	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	291	316	0	ENST00000263735.4:c.439G>T	p.Glu147Ter	p.E147*	ENST00000263735	NM_002354.2	147	Gaa/Taa																																																																															
PMS1	5378	MSKCC	GRCh37	2	190670445	190670445	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	325	338	0	ENST00000441310.2:c.383A>T	p.His128Leu	p.H128L	ENST00000441310	NM_000534.4	128	cAc/cTc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225378276	225378276	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	318	310	0	ENST00000264414.4:c.619G>T	p.Ala207Ser	p.A207S	ENST00000264414	NM_003590.4	207	Gct/Tct																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659793	227659793	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	413	359	2	ENST00000305123.5:c.3662G>T	p.Arg1221Leu	p.R1221L	ENST00000305123	NM_005544.2	1221	cGc/cTc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546649	9546649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	459	466	0	ENST00000353224.5:c.1373G>T	p.Gly458Val	p.G458V	ENST00000353224	NM_177990.2	458	gGc/gTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385246	41385246	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	168	507	1	ENST00000373198.4:c.715G>T	p.Val239Phe	p.V239F	ENST00000373198	NM_133170.3	239	Gtc/Ttc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62292808	62292808	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	302	345	0	ENST00000482936.1:c.260C>T	p.Ser87Leu	p.S87L	ENST00000482936		87	tCa/tTa																																																																															
EP300	2033	MSKCC	GRCh37	22	41574116	41574116	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	380	511	0	ENST00000263253.7:c.6401A>T	p.Asn2134Ile	p.N2134I	ENST00000263253	NM_001429.3	2134	aAt/aTt																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170016897	170016897	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	262	437	0	ENST00000295797.4:c.1702del	p.Asp568MetfsTer4	p.D568Mfs*4	ENST00000295797	NM_002740.5	568	Gat/at																																																																															
APC	324	MSKCC	GRCh37	5	112116555	112116555	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	326	353	0	ENST00000257430.4:c.600G>T	p.Met200Ile	p.M200I	ENST00000257430	NM_000038.5	200	atG/atT																																																																															
APC	324	MSKCC	GRCh37	5	112176998	112176998	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	440	471	0	ENST00000257430.4:c.5707A>T	p.Asn1903Tyr	p.N1903Y	ENST00000257430	NM_000038.5	1903	Aac/Tac																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520671	176520671	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1166961756		P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	438	578	0	ENST00000292408.4:c.1414C>A	p.Pro472Thr	p.P472T	ENST00000292408	NM_213647.1	472	Ccc/Acc																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045811	26045812	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	256	435	0	ENST00000540144.1:c.173_174delinsAA	p.Ser58Ter	p.S58*	ENST00000540144	NM_003531.2	58	tCC/tAA																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324581	31324581	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs151341152		P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	254	583	0	ENST00000412585.2:c.227T>G	p.Ile76Arg	p.I76R	ENST00000412585	NM_005514.6	76	aTa/aGa																																																																															
RAC1	5879	MSKCC	GRCh37	7	6431620	6431620	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	83	223	0	ENST00000356142.4:c.173C>A	p.Thr58Lys	p.T58K	ENST00000356142	NM_018890.3	58	aCa/aAa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467783	50467783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	341	513	0	ENST00000331340.3:c.1018G>T	p.Val340Leu	p.V340L	ENST00000331340	NM_006060.4	340	Gtg/Ttg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141582913	141582913	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	182	461	1	ENST00000220592.5:c.334A>T	p.Lys112Ter	p.K112*	ENST00000220592	NM_012154.3	112	Aag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0041522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	162	613	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0041522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	226	625	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0041522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	53	409	0	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																															
XIAP	331	MSKCC	GRCh37	X	123019943	123019943	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	117	606	0	ENST00000355640.3:c.431G>C	p.Gly144Ala	p.G144A	ENST00000355640		144	gGg/gCg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591895	48591895	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	127	504	0	ENST00000342988.3:c.1058A>G	p.Tyr353Cys	p.Y353C	ENST00000342988	NM_005359.5	353	tAc/tGc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134564	41134564	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	65	460	0	ENST00000379561.5:c.1064T>C	p.Met355Thr	p.M355T	ENST00000379561	NM_002015.3	355	aTg/aCg																																																																															
MET	4233	MSKCC	GRCh37	7	116411883	116411905	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCTTTCTCTCTGTTTTAAGATC	TTCTTTCTCTCTGTTTTAAGATC	-			P-0041524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	361	783	0	ENST00000397752.3:c.2888-19_2891del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	187	432	0				ENST00000310581	NM_198253.2																																																																																	
FGFR3	2261	MSKCC	GRCh37	4	1806089	1806089	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913479		P-0041577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	785	796	0	ENST00000260795.2:c.1108G>T	p.Gly370Cys	p.G370C	ENST00000260795		370	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577102	7577102	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1064793881		P-0041577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	372	644	1	ENST00000269305.4:c.836G>A	p.Gly279Glu	p.G279E	ENST00000269305	NM_001126112.2	279	gGg/gAg																																																																															
MED12	9968	MSKCC	GRCh37	X	70349973	70349973	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1421325265		P-0041577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	289	664	4	ENST00000374080.3:c.3956G>A	p.Arg1319His	p.R1319H	ENST00000374080		1319	cGc/cAc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44870210	44870210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	42	397	0	ENST00000377967.4:c.389C>A	p.Ala130Asp	p.A130D	ENST00000377967	NM_021140.2	130	gCt/gAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717738	89717739	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAGA			P-0041577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	82	360	0	ENST00000371953.3:c.764_767dup	p.Glu256AspfsTer43	p.E256Dfs*43	ENST00000371953	NM_000314.4	255	gta/gTAGAta																																																																															
PPARG	5468	MSKCC	GRCh37	3	12422940	12422940	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	156	516	1	ENST00000287820.6:c.430G>C	p.Asp144His	p.D144H	ENST00000287820	NM_015869.4	144	Gat/Cat																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054591	5054591	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1443023071		P-0041577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	16	239	0	ENST00000381652.3:c.643C>T	p.Arg215Ter	p.R215*	ENST00000381652	NM_004972.3	215	Cga/Tga																																																																															
CIC	23152	MSKCC	GRCh37	19	42796882	42796883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761345552		P-0041625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	314	959	6	ENST00000575354.2:c.3347dup	p.Ser1117LysfsTer34	p.S1117Kfs*34	ENST00000575354	NM_015125.3	1114	gcc/gCcc																																																																															
TERT	7015	MSKCC	GRCh37	5	1293850	1293850	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1167344136		P-0041625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	264	1082	2	ENST00000310581.5:c.1151A>G	p.Gln384Arg	p.Q384R	ENST00000310581	NM_198253.2	384	cAg/cGg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876188	35876188	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs536561203		P-0041735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	264	558	0	ENST00000303115.3:c.980C>T	p.Thr327Met	p.T327M	ENST00000303115	NM_002185.3	327	aCg/aTg																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20152120	20152120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	193	382	0	ENST00000379607.5:c.210G>C	p.Trp70Cys	p.W70C	ENST00000379607	NM_001412.3	70	tgG/tgC																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105631	27105631	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	95	554	0	ENST00000324856.7:c.5244del	p.Arg1749GlyfsTer21	p.R1749Gfs*21	ENST00000324856	NM_006015.4	1748	Ggg/gg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672534	30672534	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs774404458		P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	316	725	0	ENST00000376406.3:c.4426G>T	p.Gly1476Ter	p.G1476*	ENST00000376406	NM_014641.2	1476	Gga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	17	307	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	316	674	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519963		P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	166	290	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355047	73355047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	205	443	0	ENST00000377767.4:c.323G>A	p.Arg108His	p.R108H	ENST00000377767	NM_014953.3	108	cGc/cAc																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112771570	112771570	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	71	489	0	ENST00000369452.4:c.1743G>T	p.Met581Ile	p.M581I	ENST00000369452	NM_007373.3	581	atG/atT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447022	49447023	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	170	458	1	ENST00000301067.7:c.921_922delinsTT	p.Met307_Glu308delinsIleTer	p.M307_E308delinsI*	ENST00000301067	NM_003482.3	307	atGGag/atTTag																																																																															
POLE	5426	MSKCC	GRCh37	12	133245527	133245527	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	140	406	0	ENST00000320574.5:c.1795-2A>T		p.X599_splice	ENST00000320574	NM_006231.2	599																																																																																
IDH2	3418	MSKCC	GRCh37	15	90628291	90628291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	366	825	0	ENST00000330062.3:c.1120G>T	p.Ala374Ser	p.A374S	ENST00000330062	NM_002168.2	374	Gcc/Tcc																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66519919	66519919	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	178	454	0	ENST00000358598.2:c.402G>C	p.Lys134Asn	p.K134N	ENST00000358598	NM_212471.2	134	aaG/aaC																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210647	2210647	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	274	673	0	ENST00000398665.3:c.1144G>T	p.Gly382Ter	p.G382*	ENST00000398665	NM_032482.2	382	Gga/Tga																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086125	16086125	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	211	618	0	ENST00000281043.3:c.1301A>T	p.Gln434Leu	p.Q434L	ENST00000281043	NM_005378.4	434	cAg/cTg																																																																															
ACVR1	90	MSKCC	GRCh37	2	158634681	158634681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	98	374	0	ENST00000263640.3:c.505G>T	p.Gly169Trp	p.G169W	ENST00000263640	NM_001105.4	169	Ggg/Tgg																																																																															
BARD1	580	MSKCC	GRCh37	2	215674193	215674193	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876659387		P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	202	661	0	ENST00000260947.4:c.101G>T	p.Trp34Leu	p.W34L	ENST00000260947	NM_000465.2	34	tGg/tTg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561387	9561387	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs760277504		P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	246	547	0	ENST00000353224.5:c.395C>A	p.Ser132Tyr	p.S132Y	ENST00000353224	NM_177990.2	132	tCc/tAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201805	66201805	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	160	487	1	ENST00000273854.3:c.2697C>A	p.Ser899Arg	p.S899R	ENST00000273854	NM_004439.5	899	agC/agA																																																																															
TERT	7015	MSKCC	GRCh37	5	1293902	1293902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	439	816	0	ENST00000310581.5:c.1099G>T	p.Gly367Cys	p.G367C	ENST00000310581	NM_198253.2	367	Ggt/Tgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	19	360	0	ENST00000304494.5:c.132C>A	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/taA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0041864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	91	617	0	ENST00000275493.2:c.2303_2311dup	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468167	50468167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	44	660	2	ENST00000331340.3:c.1402C>T	p.Arg468Trp	p.R468W	ENST00000331340	NM_006060.4	468	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	91	283	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577584	7577584	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	376	663	1	ENST00000269305.4:c.697del	p.His233ThrfsTer14	p.H233Tfs*14	ENST00000269305	NM_001126112.2	233	Cac/ac																																																																															
MTOR	2475	MSKCC	GRCh37	1	11172917	11172917	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	198	660	0	ENST00000361445.4:c.7358A>T	p.Gln2453Leu	p.Q2453L	ENST00000361445	NM_004958.3	2453	cAg/cTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120478097	120478097	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0041872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	77	506	0	ENST00000256646.2:c.3653G>C	p.Arg1218Pro	p.R1218P	ENST00000256646	NM_024408.3	1218	cGg/cCg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18499737	18499737	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	182	472	0	ENST00000266497.5:c.1592C>A	p.Ala531Glu	p.A531E	ENST00000266497		531	gCa/gAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29556138	29556139	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0041872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	12	119	0	ENST00000358273.4:c.2505_2506delinsTT	p.Gln835_Glu836delinsHisTer	p.Q835_E836delinsH*	ENST00000358273	NM_001042492.2	835	caGGaa/caTTaa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58700975	58700975	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	713	704	0	ENST00000305921.3:c.566A>C	p.His189Pro	p.H189P	ENST00000305921	NM_003620.3	189	cAc/cCc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661995	227661995	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	252	742	0	ENST00000305123.5:c.1460G>T	p.Arg487Leu	p.R487L	ENST00000305123	NM_005544.2	487	cGg/cTg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204759	128204759	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs375298899		P-0041872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	464	1021	0	ENST00000341105.2:c.682C>A	p.Pro228Thr	p.P228T	ENST00000341105	NM_032638.4	228	Ccc/Acc																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538915	23538915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	211	666	1	ENST00000380871.4:c.524G>A	p.Arg175Lys	p.R175K	ENST00000380871	NM_006167.3	175	aGa/aAa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117869637	117869637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	175	541	0	ENST00000297338.2:c.557C>T	p.Thr186Ile	p.T186I	ENST00000297338	NM_006265.2	186	aCt/aTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0041875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	191	547	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0041976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	342	783	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0041976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	631	440	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864884	117864884	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	93	437	0	ENST00000297338.2:c.1225G>T	p.Glu409Ter	p.E409*	ENST00000297338	NM_006265.2	409	Gag/Tag																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023241	150023241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	79	412	0	ENST00000253339.5:c.22G>A	p.Glu8Lys	p.E8K	ENST00000253339		8	Gaa/Aaa																																																																															
PARP1	142	MSKCC	GRCh37	1	226555202	226555202	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	101	477	0	ENST00000366794.5:c.2385G>C	p.Glu795Asp	p.E795D	ENST00000366794	NM_001618.3	795	gaG/gaC																																																																															
FLT1	2321	MSKCC	GRCh37	13	28963991	28963991	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	161	338	0	ENST00000282397.4:c.1911A>T	p.Arg637Ser	p.R637S	ENST00000282397	NM_002019.4	637	agA/agT																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716361	52716361	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0041976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	150	659	0	ENST00000322088.6:c.805G>A	p.Glu269Lys	p.E269K	ENST00000322088	NM_014225.5	269	Gag/Aag																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43748585	43748585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	456	426	2	ENST00000523873.1:c.539G>A	p.Gly180Asp	p.G180D	ENST00000523873		180	gGc/gAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257321	16257322	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	111	518	0	ENST00000375759.3:c.4592dup	p.Leu1531PhefsTer7	p.L1531Ffs*7	ENST00000375759	NM_015001.2	1529	cgt/cgTt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261772	16261772	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	147	520	0	ENST00000375759.3:c.9037G>C	p.Val3013Leu	p.V3013L	ENST00000375759	NM_015001.2	3013	Gtc/Ctc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	20	53	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935356	36935356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	50	685	0	ENST00000361632.4:c.1371G>T	p.Gln457His	p.Q457H	ENST00000361632		457	caG/caT																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36941011	36941011	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	173	652	0	ENST00000361632.4:c.328C>T	p.Gln110Ter	p.Q110*	ENST00000361632		110	Cag/Tag																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88681327	88681327	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780107		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	78	390	1	ENST00000372037.3:c.1217G>A	p.Arg406His	p.R406H	ENST00000372037	NM_004329.2	406	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692874	89692874	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786204930		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	76	252	0	ENST00000371953.3:c.358G>A	p.Ala120Thr	p.A120T	ENST00000371953	NM_000314.4	120	Gca/Aca																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	216	371	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123239421	123239421	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764959117		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	34	420	0	ENST00000358487.5:c.2416G>A	p.Glu806Lys	p.E806K	ENST00000358487	NM_000141.4	806	Gaa/Aaa																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195499	102195499	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	102	381	0	ENST00000263464.3:c.263del	p.Lys88SerfsTer12	p.K88Sfs*12	ENST00000263464	NM_001165.4	87	Aaa/aa																																																																															
ATM	472	MSKCC	GRCh37	11	108098418	108098418	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs746235533		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	50	260	0	ENST00000278616.4:c.67C>T	p.Arg23Ter	p.R23*	ENST00000278616	NM_000051.3	23	Cga/Tga																																																																															
CBL	867	MSKCC	GRCh37	11	119170378	119170378	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	87	369	0	ENST00000264033.4:c.2608T>G	p.Ser870Ala	p.S870A	ENST00000264033	NM_005188.3	870	Tcc/Gcc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112353	115112353	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	53	139	0	ENST00000257566.3:c.1387G>T	p.Ala463Ser	p.A463S	ENST00000257566	NM_016569.3	463	Gcg/Tcg																																																																															
B2M	567	MSKCC	GRCh37	15	45007896	45007897	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	76	256	0	ENST00000558401.1:c.346+1dup		p.W115fs	ENST00000558401	NM_004048.2	115	tgg/tGgg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222251	2222251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	223	792	1	ENST00000326181.6:c.535G>A	p.Glu179Lys	p.E179K	ENST00000326181	NM_032271.2	179	Gag/Aag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89828358	89828358	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs755546887		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	103	387	0	ENST00000389301.3:c.2851C>T	p.Arg951Trp	p.R951W	ENST00000389301	NM_000135.2	951	Cgg/Tgg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89858352	89858352	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762736991		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	143	502	0	ENST00000389301.3:c.1208C>T	p.Ala403Val	p.A403V	ENST00000389301	NM_000135.2	403	gCg/gTg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	140	550	2	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
NF1	4763	MSKCC	GRCh37	17	29486050	29486050	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1438566555		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	50	238	0	ENST00000358273.4:c.233del	p.Asn78IlefsTer7	p.N78Ifs*7	ENST00000358273	NM_001042492.2	76	gAa/ga																																																																															
NF1	4763	MSKCC	GRCh37	17	29552152	29552152	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199474738		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	54	255	0	ENST00000358273.4:c.1885G>A	p.Gly629Arg	p.G629R	ENST00000358273	NM_001042492.2	629	Ggg/Agg																																																																															
NF1	4763	MSKCC	GRCh37	17	29663652	29663652	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	65	269	0	ENST00000358273.4:c.6148-1G>T		p.X2050_splice	ENST00000358273	NM_001042492.2	2050																																																																																
SUZ12	23512	MSKCC	GRCh37	17	30264357	30264357	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	31	129	0	ENST00000322652.5:c.92T>C	p.Val31Ala	p.V31A	ENST00000322652	NM_015355.2	31	gTg/gCg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881082	37881082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	175	760	0	ENST00000269571.5:c.2411G>A	p.Gly804Asp	p.G804D	ENST00000269571		804	gGc/gAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883774	37883774	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	203	759	2	ENST00000269571.5:c.3391del	p.Leu1131Ter	p.L1131*	ENST00000269571		1129	gCc/gc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40500498	40500498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	136	501	0	ENST00000264657.5:c.37C>T	p.Arg13Trp	p.R13W	ENST00000264657	NM_139276.2	13	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	147	715	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740836	58740836	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs747668756		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	133	469	1	ENST00000305921.3:c.1741C>T	p.Arg581Ter	p.R581*	ENST00000305921	NM_003620.3	581	Cga/Tga																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78865613	78865613	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752600548		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	154	441	1	ENST00000306801.3:c.2077G>A	p.Ala693Thr	p.A693T	ENST00000306801	NM_020761.2	693	Gcc/Acc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1611735	1611735	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375296938		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	186	665	0	ENST00000344749.5:c.1927G>A	p.Glu643Lys	p.E643K	ENST00000344749	NM_001136139.2	643	Gaa/Aaa																																																																															
CARM1	10498	MSKCC	GRCh37	19	11030355	11030355	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	112	477	0	ENST00000327064.4:c.1105A>G	p.Arg369Gly	p.R369G	ENST00000327064	NM_199141.1	369	Agg/Ggg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285135	15285135	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1184438857		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	198	733	0	ENST00000263388.2:c.4480G>A	p.Gly1494Ser	p.G1494S	ENST00000263388	NM_000435.2	1494	Ggc/Agc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965520	18965520	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	153	607	0	ENST00000262803.5:c.1265+2T>C		p.X422_splice	ENST00000262803	NM_002911.3	422																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36214714	36214714	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774265693		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	94	559	0	ENST00000222270.7:c.3140G>A	p.Arg1047Gln	p.R1047Q	ENST00000222270	NM_014727.1	1047	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214866	36214866	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	232	783	0	ENST00000222270.7:c.3296del	p.Gly1099AlafsTer83	p.G1099Afs*83	ENST00000222270	NM_014727.1	1098	Ggg/gg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753602	42753602	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779162156		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	166	807	0	ENST00000222329.4:c.662C>T	p.Pro221Leu	p.P221L	ENST00000222329	NM_006494.2	221	cCg/cTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42796883	42796883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	196	845	0	ENST00000575354.2:c.3347del	p.Pro1116GlnfsTer45	p.P1116Qfs*45	ENST00000575354	NM_015125.3	1114	gCc/gc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25536786	25536786	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1174462913		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	176	554	0	ENST00000264709.3:c.68G>A	p.Arg23Gln	p.R23Q	ENST00000264709	NM_175629.2	23	cGa/cAa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26022316	26022316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	129	519	0	ENST00000435504.4:c.341G>A	p.Ser114Asn	p.S114N	ENST00000435504		114	aGc/aAc																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47596650	47596651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	60	178	0	ENST00000263735.4:c.11dup	p.Gln5AlafsTer26	p.Q5Afs*26	ENST00000263735	NM_002354.2	2	-/C																																																																															
MSH2	4436	MSKCC	GRCh37	2	47656889	47656889	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	35	91	0	ENST00000233146.2:c.1085T>C	p.Leu362Ser	p.L362S	ENST00000233146	NM_000251.2	362	tTa/tCa																																																																															
CASP8	841	MSKCC	GRCh37	2	202131411	202131411	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs777784105		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	133	442	0	ENST00000358485.4:c.379C>T	p.Arg127Ter	p.R127*	ENST00000358485	NM_001080125.1	127	Cga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212570063	212570063	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746784831		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	96	325	0	ENST00000342788.4:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000342788	NM_005235.2	393	cGg/cAg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	109	299	6	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735460	40735460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	177	582	0	ENST00000373198.4:c.3413T>G	p.Leu1138Arg	p.L1138R	ENST00000373198	NM_133170.3	1138	cTc/cGc																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45651187	45651187	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs749300015		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	154	494	0	ENST00000407780.3:c.838C>T	p.Arg280Ter	p.R280*	ENST00000407780	NM_001283052.1	280	Cga/Tga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	74	287	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
BAP1	8314	MSKCC	GRCh37	3	52438494	52438494	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756443059		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	152	504	0	ENST00000460680.1:c.1225G>A	p.Val409Met	p.V409M	ENST00000460680	NM_004656.3	409	Gtg/Atg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52662971	52662971	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755190183		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	116	324	0	ENST00000394830.3:c.1382G>A	p.Arg461His	p.R461H	ENST00000394830	NM_018313.4	461	cGc/cAc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247442	71247442	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750746668		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	159	542	0	ENST00000318789.4:c.91G>A	p.Gly31Ser	p.G31S	ENST00000318789	NM_032682.5	31	Ggt/Agt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468397	89468398	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1467832547		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	49	237	1	ENST00000336596.2:c.1938dup	p.Glu647ArgfsTer7	p.E647Rfs*7	ENST00000336596	NM_005233.5	644	tca/tcAa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468402	89468405	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	40	246	0	ENST00000336596.2:c.1937_1940del	p.Lys646ArgfsTer9	p.K646Rfs*9	ENST00000336596	NM_005233.5	646	AAAGag/ag																																																																															
ATR	545	MSKCC	GRCh37	3	142172034	142172034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	100	384	0	ENST00000350721.4:c.7697G>A	p.Ser2566Asn	p.S2566N	ENST00000350721	NM_001184.3	2566	aGt/aAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	41	496	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
BCL6	604	MSKCC	GRCh37	3	187446890	187446890	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753955082		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	206	721	0	ENST00000232014.4:c.1303G>A	p.Gly435Arg	p.G435R	ENST00000232014	NM_001130845.1	435	Ggg/Agg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197772	66197772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	72	312	0	ENST00000273854.3:c.2927C>T	p.Ala976Val	p.A976V	ENST00000273854	NM_004439.5	976	gCa/gTa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	73	254	2	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268144	153268144	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs920052554		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	121	302	1	ENST00000281708.4:c.664C>T	p.Arg222Ter	p.R222*	ENST00000281708	NM_033632.3	222	Cga/Tga																																																																															
TERT	7015	MSKCC	GRCh37	5	1254597	1254597	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1418488828		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	138	598	0	ENST00000310581.5:c.3181G>A	p.Ala1061Thr	p.A1061T	ENST00000310581	NM_198253.2	1061	Gcc/Acc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	77	262	3	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	191	481	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86648999	86648999	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	62	243	1	ENST00000274376.6:c.1279C>T	p.Arg427Ter	p.R427*	ENST00000274376	NM_002890.2	427	Cga/Tga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	51	183	0	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	91	333	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	72	314	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
RAD50	10111	MSKCC	GRCh37	5	131930612	131930612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	72	287	0	ENST00000265335.6:c.1849del	p.Arg617GlufsTer26	p.R617Efs*26	ENST00000265335		615	ctA/ct																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057785	180057786	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	92	444	0	ENST00000261937.6:c.169dup	p.Leu57ProfsTer80	p.L57Pfs*80	ENST00000261937	NM_182925.4	57	ctc/cCtc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163855	32163855	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	131	458	1	ENST00000375023.3:c.5371del	p.Ala1791GlnfsTer11	p.A1791Qfs*11	ENST00000375023	NM_004557.3	1791	Gca/ca																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	383	783	0	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521922	157521922	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	47	527	0	ENST00000346085.5:c.4195del	p.Gln1399SerfsTer49	p.Q1399Sfs*49	ENST00000346085	NM_020732.3	1398	agC/ag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521932	157521932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	50	545	0	ENST00000346085.5:c.4204G>A	p.Glu1402Lys	p.E1402K	ENST00000346085	NM_020732.3	1402	Gag/Aag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	162	698	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987341	2987341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	173	528	1	ENST00000396946.4:c.88C>T	p.Arg30Trp	p.R30W	ENST00000396946	NM_032415.4	30	Cgg/Tgg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148511073	148511073	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	32	268	0	ENST00000320356.2:c.1829G>C	p.Ser610Thr	p.S610T	ENST00000320356	NM_004456.4	610	aGt/aCt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845550	151845550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753793539		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	142	535	1	ENST00000262189.6:c.13462G>A	p.Ala4488Thr	p.A4488T	ENST00000262189	NM_170606.2	4488	Gcc/Acc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	101	356	0	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006029	22006029	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	115	512	0	ENST00000276925.6:c.374A>G	p.His125Arg	p.H125R	ENST00000276925	NM_004936.3	125	cAc/cGc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772921	135772921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	174	424	0	ENST00000298552.3:c.2702G>T	p.Arg901Met	p.R901M	ENST00000298552	NM_001162426.1	901	aGg/aTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413115	139413115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	233	805	2	ENST00000277541.6:c.1027G>A	p.Ala343Thr	p.A343T	ENST00000277541	NM_017617.3	343	Gcc/Acc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923087	39923087	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	152	572	0	ENST00000378444.4:c.3621del	p.Lys1207AsnfsTer31	p.K1207Nfs*31	ENST00000378444	NM_001123385.1	1207	aaA/aa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411411	63411411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	152	645	1	ENST00000330258.3:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000330258	NM_152424.3	586	Cga/Tga																																																																															
AR	367	MSKCC	GRCh37	X	66765242	66765243	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA	rs754644993		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	75	440	0	ENST00000374690.3:c.271_273dup	p.Gln91dup	p.Q91dup	ENST00000374690	NM_000044.3	91	agg/agGCAg																																																																															
MED12	9968	MSKCC	GRCh37	X	70353057	70353057	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	35	410	0	ENST00000374080.3:c.4612A>G	p.Asn1538Asp	p.N1538D	ENST00000374080		1538	Aac/Gac																																																																															
ATRX	546	MSKCC	GRCh37	X	76814283	76814283	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	70	273	0	ENST00000373344.5:c.6361T>C	p.Ser2121Pro	p.S2121P	ENST00000373344	NM_000489.3	2121	Tct/Cct																																																																															
ATRX	546	MSKCC	GRCh37	X	76938229	76938230	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	97	508	3	ENST00000373344.5:c.2518dup	p.Arg840LysfsTer9	p.R840Kfs*9	ENST00000373344	NM_000489.3	840	aga/aAga																																																																															
MYC	4609	MSKCC	GRCh37	8	128752965	128752965	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	162	602	0	ENST00000377970.2:c.1126G>C	p.Val376Leu	p.V376L	ENST00000377970	NM_002467.4	376	Gtc/Ctc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198263228	198263228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	27	436	0	ENST00000335508.6:c.3091G>T	p.Val1031Leu	p.V1031L	ENST00000335508	NM_012433.2	1031	Gta/Tta																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	114	526	0				ENST00000310581	NM_198253.2																																																																																	
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0042228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	6312	477	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0042251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	30	368	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0042251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	14	252	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94219252	94219252	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0042313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	55	269	0	ENST00000323929.3:c.154-2A>T		p.X52_splice	ENST00000323929	NM_005591.3	52																																																																																
HNF1A	6927	MSKCC	GRCh37	12	121426769	121426769	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	183	735	1	ENST00000257555.6:c.460A>G	p.Met154Val	p.M154V	ENST00000257555		154	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0042313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	162	633	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29654535	29654535	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	80	260	0	ENST00000358273.4:c.5287C>T	p.Gln1763Ter	p.Q1763*	ENST00000358273	NM_001042492.2	1763	Caa/Taa																																																																															
INHA	3623	MSKCC	GRCh37	2	220437359	220437360	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0042313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	74	701	0	ENST00000243786.2:c.266_267dup	p.Asp90GlnfsTer38	p.D90Qfs*38	ENST00000243786	NM_002191.3	88	gcc/gcCAc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685209	86685209	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0042313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	46	190	0	ENST00000274376.6:c.2926-1G>C		p.X976_splice	ENST00000274376	NM_002890.2	976																																																																																
HIST1H3E	8353	MSKCC	GRCh37	6	26225588	26225588	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	139	415	0	ENST00000360408.1:c.206A>T	p.Gln69Leu	p.Q69L	ENST00000360408	NM_003532.2	69	cAg/cTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100080	157100094	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCCGC	GGCGGCGGCGGCCGC	-	rs775733700		P-0042313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	34	34	0	ENST00000346085.5:c.1029_1043del	p.Ala346_Ala350del	p.A346_A350del	ENST00000346085	NM_020732.3	339	gtGGCGGCGGCGGCCGCg/gtg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162475160	162475160	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	44	424	0	ENST00000366898.1:c.581del	p.Gly194ValfsTer31	p.G194Vfs*31	ENST00000366898	NM_004562.2	194	gGt/gt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513160	106513160	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0042313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	49	227	0	ENST00000359195.3:c.2064C>A	p.Asn688Lys	p.N688K	ENST00000359195	NM_002649.2	688	aaC/aaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	130	358	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2974245	2974245	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	227	628	0	ENST00000396946.4:c.1360C>A	p.Pro454Thr	p.P454T	ENST00000396946	NM_032415.4	454	Cca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs867114783		P-0042414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	365	395	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080560	5080560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	40	121	0	ENST00000381652.3:c.2311C>T	p.Gln771Ter	p.Q771*	ENST00000381652	NM_004972.3	771	Cag/Tag																																																																															
STAT3	6774	MSKCC	GRCh37	17	40481601	40481601	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	82	323	0	ENST00000264657.5:c.1204G>C	p.Gly402Arg	p.G402R	ENST00000264657	NM_139276.2	402	Ggc/Cgc																																																																															
TERT	7015	MSKCC	GRCh37	5	1282709	1282709	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	84	336	0	ENST00000310581.5:c.1604G>C	p.Arg535Pro	p.R535P	ENST00000310581	NM_198253.2	535	cGt/cCt																																																																															
FYN	2534	MSKCC	GRCh37	6	112015643	112015643	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	187	260	0	ENST00000368678.4:c.1199T>C	p.Ile400Thr	p.I400T	ENST00000368678		400	aTa/aCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0042477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	58	449	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0042477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	44	423	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	341247	341247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	83	539	0	ENST00000262320.3:c.2237G>A	p.Cys746Tyr	p.C746Y	ENST00000262320	NM_003502.3	746	tGc/tAc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935391	36935391	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	94	547	0	ENST00000361632.4:c.1336T>C	p.Trp446Arg	p.W446R	ENST00000361632		446	Tgg/Cgg																																																																															
MED12	9968	MSKCC	GRCh37	X	70345916	70345916	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	54	391	0	ENST00000374080.3:c.2453A>G	p.Asn818Ser	p.N818S	ENST00000374080		818	aAc/aGc																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0042506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	104	652	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																															
BLM	641	MSKCC	GRCh37	15	91312737	91312737	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1319281718		P-0042506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	64	432	0	ENST00000355112.3:c.2476G>T	p.Val826Leu	p.V826L	ENST00000355112	NM_000057.2	826	Gtg/Ttg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801028	1801028	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	98	1076	0	ENST00000260795.2:c.157A>C	p.Ser53Arg	p.S53R	ENST00000260795		53	Agc/Cgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0042514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	79	342	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624272	89624273	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0042514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	31	375	0	ENST00000371953.3:c.47dup	p.Tyr16Ter	p.Y16*	ENST00000371953	NM_000314.4	16	tat/tAat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs876660821		P-0042514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	47	687	0	ENST00000269305.4:c.537T>G	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caG																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857680	9857680	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1303700994		P-0042514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	55	402	1	ENST00000330684.3:c.3721C>T	p.Arg1241Trp	p.R1241W	ENST00000330684	NM_001134407.1	1241	Cgg/Tgg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362230	40362230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	63	462	0	ENST00000293328.3:c.1865C>T	p.Ser622Leu	p.S622L	ENST00000293328	NM_012448.3	622	tCa/tTa																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085828	16085828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	32	524	0	ENST00000281043.3:c.1004C>T	p.Pro335Leu	p.P335L	ENST00000281043	NM_005378.4	335	cCc/cTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249522	153249522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	56	382	0	ENST00000281708.4:c.1256G>A	p.Gly419Glu	p.G419E	ENST00000281708	NM_033632.3	419	gGa/gAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241673	55241673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	329	654	0	ENST00000275493.2:c.2121G>T	p.Leu707Phe	p.L707F	ENST00000275493	NM_005228.3	707	ttG/ttT																																																																															
MED12	9968	MSKCC	GRCh37	X	70360624	70360629	+	inframe_deletion	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	rs1200384718		P-0042557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	40	429	0	ENST00000374080.3:c.6195_6200del	p.Gln2075_Gln2076del	p.Q2075_Q2076del	ENST00000374080		2062	CAGCAG/-																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798189	32798189	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	175	678	0	ENST00000374899.4:c.1490A>T	p.Glu497Val	p.E497V	ENST00000374899	NM_018833.2	497	gAg/gTg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61717848	61717853	+	inframe_deletion	In_Frame_Del	DEL	CTTGTA	CTTGTA	-			P-0042557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	273	559	0	ENST00000401558.2:c.1946_1951del	p.Val649_Gln650del	p.V649_Q650del	ENST00000401558	NM_003400.3	649	gTACAAGaa/gaa																																																																															
JUN	3725	MSKCC	GRCh37	1	59248409	59248409	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	212	468	0	ENST00000371222.2:c.334G>T	p.Glu112Ter	p.E112*	ENST00000371222	NM_002228.3	112	Gag/Tag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423500	88423500	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0042557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	128	537	0	ENST00000360948.2:c.2334+1G>T		p.X778_splice	ENST00000360948	NM_001012338.2	778																																																																																
PALB2	79728	MSKCC	GRCh37	16	23641551	23641551	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs730881865		P-0042557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	286	590	2	ENST00000261584.4:c.1924del	p.Met642CysfsTer18	p.M642Cfs*18	ENST00000261584	NM_024675.3	642	Atg/tg																																																																															
AXL	558	MSKCC	GRCh37	19	41765646	41765647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	315	744	0	ENST00000301178.4:c.2528dup	p.Thr844AsnfsTer6	p.T844Nfs*6	ENST00000301178	NM_021913.4	841	gac/gaCc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26029207	26029207	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0042557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	76	311	0	ENST00000435504.4:c.144-1G>A		p.X48_splice	ENST00000435504		48																																																																																
PIK3CB	5291	MSKCC	GRCh37	3	138461412	138461412	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	176	312	0	ENST00000289153.2:c.609del	p.Phe203LeufsTer16	p.F203Lfs*16	ENST00000289153	NM_006219.2	203	ttT/tt																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664467	138664467	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	109	506	0	ENST00000330315.3:c.1098G>C	p.Lys366Asn	p.K366N	ENST00000330315	NM_023067.3	366	aaG/aaC																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971375	13971375	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0042557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	150	345	0	ENST00000405192.2:c.555-1G>C		p.X185_splice	ENST00000405192	NM_001163147.1	185																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151879634	151879634	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	119	271	1	ENST00000262189.6:c.5311C>G	p.Gln1771Glu	p.Q1771E	ENST00000262189	NM_170606.2	1771	Cag/Gag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44920659	44920659	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	141	394	0	ENST00000377967.4:c.1420T>A	p.Leu474Ile	p.L474I	ENST00000377967	NM_021140.2	474	Tta/Ata																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152861551	152861551	+	synonymous_variant	Silent	SNP	A	A	C			P-0042557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	296	852	0	ENST00000406277.2:c.201T>G	p.Pro67=	p.P67=	ENST00000406277	NM_152274.4	67	ccT/ccG																																																																															
KIT	3815	MSKCC	GRCh37	4	55602659	55602679	+	coding_sequence_variant,intron_variant	Frame_Shift_Del	DEL	TACAGGCTCGACTACCTGTGA	TACAGGCTCGACTACCTGTGA	AATAGGCTTCTATTAC			P-0042557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	136	308	1	ENST00000288135.5:c.2485-5_2500delinsAATAGGCTTCTATTAC		p.*829fs*	ENST00000288135	NM_000222.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577025	7577025	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0042594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	619	689	0	ENST00000269305.4:c.913A>T	p.Lys305Ter	p.K305*	ENST00000269305	NM_001126112.2	305	Aag/Tag																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945090	31945090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	1488	648	0	ENST00000340398.3:c.11C>T	p.Thr4Ile	p.T4I	ENST00000340398	NM_001013699.2	4	aCc/aTc																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551808	150551808	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1245371992		P-0042594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	16	24	0	ENST00000369026.2:c.199T>G	p.Ser67Ala	p.S67A	ENST00000369026	NM_021960.4	67	Tcc/Gcc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8105971	8105975	+	frameshift_variant	Frame_Shift_Del	DEL	TGAAC	TGAAC	-			P-0042594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	159	400	0	ENST00000346208.3:c.793_797del	p.Asn265TrpfsTer36	p.N265Wfs*36	ENST00000346208		264	gTGAAC/g																																																																															
ATM	472	MSKCC	GRCh37	11	108114756	108114756	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	254	397	0	ENST00000278616.4:c.573T>G	p.Ile191Met	p.I191M	ENST00000278616	NM_000051.3	191	atT/atG																																																																															
ATM	472	MSKCC	GRCh37	11	108114769	108114769	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0042594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	271	452	0	ENST00000278616.4:c.586A>T	p.Lys196Ter	p.K196*	ENST00000278616	NM_000051.3	196	Aaa/Taa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120911	115120911	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1029030166		P-0042594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	33	280	0	ENST00000257566.3:c.95C>T	p.Ala32Val	p.A32V	ENST00000257566	NM_016569.3	32	gCg/gTg																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38632010	38632010	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	302	527	1	ENST00000299084.4:c.496G>T	p.Glu166Ter	p.E166*	ENST00000299084	NM_152594.2	166	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597429	10597430	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0042594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	471	761	1	ENST00000171111.5:c.1773_1774delinsTT	p.Trp591_Ser592delinsCysCys	p.W591_S592delinsCC	ENST00000171111	NM_203500.1	591	tgGAgc/tgTTgc																																																																															
KDR	3791	MSKCC	GRCh37	4	55976591	55976591	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	131	454	0	ENST00000263923.4:c.1234G>T	p.Val412Leu	p.V412L	ENST00000263923	NM_002253.2	412	Gtg/Ttg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93969072	93969072	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0042594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	104	217	0	ENST00000369303.4:c.1924G>T	p.Gly642Ter	p.G642*	ENST00000369303	NM_004440.3	642	Gga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604655	48604655	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121912578		P-0042596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	24	294	0	ENST00000342988.3:c.1477G>C	p.Asp493His	p.D493H	ENST00000342988	NM_005359.5	493	Gat/Cat																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866493	42866493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	79	722	0	ENST00000398585.3:c.139G>T	p.Ala47Ser	p.A47S	ENST00000398585	NM_001135099.1	47	Gct/Tct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0042605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	228	489	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0042605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	113	621	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039709	47039709	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0042605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	117	916	0	ENST00000329236.7:c.926+1G>T		p.X309_splice	ENST00000329236	NM_001204466.1	309																																																																																
TBX3	6926	MSKCC	GRCh37	12	115110025	115110025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	74	899	0	ENST00000257566.3:c.1853C>T	p.Ala618Val	p.A618V	ENST00000257566	NM_016569.3	618	gCa/gTa																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170011204	170011204	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	77	569	0	ENST00000295797.4:c.1325T>G	p.Leu442Arg	p.L442R	ENST00000295797	NM_002740.5	442	cTc/cGc																																																																															
MET	4233	MSKCC	GRCh37	7	116411883	116411905	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCTTTCTCTCTGTTTTAAGATC	TTCTTTCTCTCTGTTTTAAGATC	-			P-0042607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	163	1005	0	ENST00000397752.3:c.2888-19_2891del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
CDKN2C	1031	MSKCC	GRCh37	1	51439658	51439658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	47	428	0	ENST00000262662.1:c.223C>T	p.His75Tyr	p.H75Y	ENST00000262662		75	Cat/Tat																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94201040	94201040	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	26	394	0	ENST00000323929.3:c.1037A>G	p.Asn346Ser	p.N346S	ENST00000323929	NM_005591.3	346	aAt/aGt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026215	48026215	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	21	376	0	ENST00000234420.5:c.1093T>A	p.Trp365Arg	p.W365R	ENST00000234420	NM_000179.2	365	Tgg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0042613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	23	925	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0042613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	41	1021	1	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100301	157100301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	17	352	2	ENST00000346085.5:c.1238C>T	p.Ser413Leu	p.S413L	ENST00000346085	NM_020732.3	413	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0042616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	450	754	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0042616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	305	462	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086010	16086010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	427	671	1	ENST00000281043.3:c.1186G>A	p.Asp396Asn	p.D396N	ENST00000281043	NM_005378.4	396	Gac/Aac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821903	72821903	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs749869759		P-0042616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	51	315	0	ENST00000268489.5:c.10272G>C	p.Gln3424His	p.Q3424H	ENST00000268489	NM_006885.3	3424	caG/caC																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021728	71021728	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	50	402	0	ENST00000318789.4:c.1630C>G	p.Arg544Gly	p.R544G	ENST00000318789	NM_032682.5	544	Cga/Gga																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522606	176522606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	435	1038	3	ENST00000292408.4:c.1703C>T	p.Pro568Leu	p.P568L	ENST00000292408	NM_213647.1	568	cCa/cTa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221666	36221666	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	117	978	0	ENST00000222270.7:c.5335C>T	p.Arg1779Ter	p.R1779*	ENST00000222270	NM_014727.1	1779	Cga/Tga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600505	10600505	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	331	781	0	ENST00000171111.5:c.1350G>A	p.Trp450Ter	p.W450*	ENST00000171111	NM_203500.1	450	tgG/tgA																																																																															
TOP1	7150	MSKCC	GRCh37	20	39744952	39744952	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	128	496	0	ENST00000361337.2:c.1742T>C	p.Met581Thr	p.M581T	ENST00000361337	NM_003286.2	581	aTg/aCg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946129	13946129	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	127	596	0	ENST00000405192.2:c.967G>C	p.Asp323His	p.D323H	ENST00000405192	NM_001163147.1	323	Gat/Cat																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729640	41729640	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	142	646	0	ENST00000242208.4:c.889G>C	p.Ala297Pro	p.A297P	ENST00000242208	NM_002192.2	297	Gcc/Ccc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8436641	8436641	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	36	554	0	ENST00000356435.5:c.4037T>A	p.Ile1346Asn	p.I1346N	ENST00000356435		1346	aTt/aAt																																																																															
TP63	8626	MSKCC	GRCh37	3	189612175	189612175	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	135	623	5	ENST00000264731.3:c.1927C>T	p.Arg643Ter	p.R643*	ENST00000264731	NM_003722.4	643	Cga/Tga																																																																															
KIT	3815	MSKCC	GRCh37	4	55593613	55593613	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121913521		P-0042799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	11	404	0	ENST00000288135.5:c.1679T>G	p.Val560Gly	p.V560G	ENST00000288135	NM_000222.2	560	gTt/gGt																																																																															
UPF1	5976	MSKCC	GRCh37	19	18971733	18971733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	174	1053	0	ENST00000262803.5:c.2399G>T	p.Arg800Leu	p.R800L	ENST00000262803	NM_002911.3	800	cGc/cTc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926248	112926249	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GC	GC	AA			P-0042799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	84	672	3	ENST00000351677.2:c.1381_1382delinsAA	p.Ala461Asn	p.A461N	ENST00000351677	NM_002834.3	461	GCt/AAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602728	10602728	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	235	1116	0	ENST00000171111.5:c.850C>G	p.Gln284Glu	p.Q284E	ENST00000171111	NM_203500.1	284	Cag/Gag																																																																															
MLH1	4292	MSKCC	GRCh37	3	37053523	37053523	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1142	135	599	0	ENST00000231790.2:c.610G>T	p.Val204Phe	p.V204F	ENST00000231790	NM_000249.3	204	Gtt/Ttt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52443814	52443856	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CATCCGGCCTCCCCAGCCCCTGGCCCTCCCGGTCCCCTCCTCA	CATCCGGCCTCCCCAGCCCCTGGCCCTCCCGGTCCCCTCCTCA	-			P-0042799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	55	987	0	ENST00000460680.1:c.37+2_37+44del		p.X13_splice	ENST00000460680	NM_004656.3	13																																																																																
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0042822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	277	638	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	295	356	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	106	175	1	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
NUF2	83540	MSKCC	GRCh37	1	163318764	163318764	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	33	329	0	ENST00000271452.3:c.1154G>C	p.Gly385Ala	p.G385A	ENST00000271452	NM_145697.2	385	gGt/gCt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982145	201982146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCAAGC			P-0042822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	346	787	0	ENST00000359651.3:c.670_676dup	p.Leu226ArgfsTer11	p.L226Rfs*11	ENST00000359651		223	-/GGCAAGC																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123829	46123829	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0042822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	49	271	0	ENST00000334344.6:c.95C>A	p.Ser32Ter	p.S32*	ENST00000334344	NM_152641.2	32	tCg/tAg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243977	46243977	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	143	393	0	ENST00000334344.6:c.2071C>G	p.His691Asp	p.H691D	ENST00000334344	NM_152641.2	691	Cat/Gat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573598	48573598	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	118	259	0	ENST00000342988.3:c.182T>A	p.Ile61Lys	p.I61K	ENST00000342988	NM_005359.5	61	aTa/aAa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	95	499	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0042856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	464	1080	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426121	47426121	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519786		P-0042856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	222	1171	0	ENST00000377045.4:c.641C>T	p.Ser214Phe	p.S214F	ENST00000377045	NM_001654.4	214	tCc/tTc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514821	103514821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112825485		P-0042856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	76	491	0	ENST00000355739.4:c.1322C>T	p.Pro441Leu	p.P441L	ENST00000355739	NM_000123.3	441	cCg/cTg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36938202	36938202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	165	1043	0	ENST00000361632.4:c.759G>A	p.Trp253Ter	p.W253*	ENST00000361632		253	tgG/tgA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0042876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	9	204	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	50	361	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39322755	39322755	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0042876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	23	355	0	ENST00000373001.3:c.238-1G>T		p.X80_splice	ENST00000373001	NM_022157.3	80																																																																																
NKX2-1	7080	MSKCC	GRCh37	14	36986739	36986740	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	12	99	0	ENST00000354822.5:c.949dup	p.Gln317ProfsTer122	p.Q317Pfs*122	ENST00000354822	NM_001079668.2	317	cag/cCag																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986853	36986854	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0042876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	21	278	0	ENST00000354822.5:c.835_836del	p.Gln279GlyfsTer159	p.Q279Gfs*159	ENST00000354822	NM_001079668.2	279	CAg/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587780070		P-0042908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	76	530	0	ENST00000269305.4:c.535C>A	p.His179Asn	p.H179N	ENST00000269305	NM_001126112.2	179	Cat/Aat																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120480480	120480480	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0042908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	41	230	0	ENST00000256646.2:c.3337G>C	p.Gly1113Arg	p.G1113R	ENST00000256646	NM_024408.3	1113	Ggt/Cgt																																																																															
NF1	4763	MSKCC	GRCh37	17	29490375	29490375	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	65	323	1	ENST00000358273.4:c.462del	p.Phe154LeufsTer11	p.F154Lfs*11	ENST00000358273	NM_001042492.2	154	Ttt/tt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412702	139412702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	116	680	0	ENST00000277541.6:c.1142G>A	p.Cys381Tyr	p.C381Y	ENST00000277541	NM_017617.3	381	tGt/tAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121912651		P-0042976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	111	598	0	ENST00000269305.4:c.742C>G	p.Arg248Gly	p.R248G	ENST00000269305	NM_001126112.2	248	Cgg/Ggg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974809	21974809	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	21	91	0	ENST00000304494.5:c.18del	p.Ser7AlafsTer19	p.S7Afs*19	ENST00000304494	NM_000077.4	6	ggG/gg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163307858	163307858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	78	423	0	ENST00000271452.3:c.484G>A	p.Ala162Thr	p.A162T	ENST00000271452	NM_145697.2	162	Gca/Aca																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588797	69588797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	47	592	2	ENST00000168712.1:c.439G>A	p.Gly147Ser	p.G147S	ENST00000168712	NM_002007.2	147	Ggc/Agc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905178	50905178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	33	744	0	ENST00000440232.2:c.460C>T	p.Pro154Ser	p.P154S	ENST00000440232	NM_002691.3	154	Cct/Tct																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99193507	99193507	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1471383993		P-0042976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	82	588	0	ENST00000074304.5:c.2702G>T	p.Arg901Leu	p.R901L	ENST00000074304	NM_001134224.1	901	cGt/cTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873533	151873533	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	79	553	0	ENST00000262189.6:c.9005A>T	p.His3002Leu	p.H3002L	ENST00000262189	NM_170606.2	3002	cAc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0043000-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	89	517	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
ATM	472	MSKCC	GRCh37	11	108106477	108106477	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043000-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			218	42	205	0	ENST00000278616.4:c.412G>T	p.Gly138Ter	p.G138*	ENST00000278616	NM_000051.3	138	Gga/Tga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52696254	52696254	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043000-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	68	515	0	ENST00000394830.3:c.423G>A	p.Trp141Ter	p.W141*	ENST00000394830	NM_018313.4	141	tgG/tgA																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926888	112926888	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs397507546		P-0043067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	247	709	0	ENST00000351677.2:c.1508G>T	p.Gly503Val	p.G503V	ENST00000351677	NM_002834.3	503	gGg/gTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207089	1207090	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0043067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	460	1044	1	ENST00000326873.7:c.177_178del	p.Tyr60ArgfsTer102	p.Y60Rfs*102	ENST00000326873	NM_000455.4	59	tcTTac/tcac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602874	10602874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	253	1120	0	ENST00000171111.5:c.704A>G	p.Asp235Gly	p.D235G	ENST00000171111	NM_203500.1	235	gAc/gGc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054827	5054828	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0043067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	96	438	0	ENST00000381652.3:c.881dup	p.Gly295TrpfsTer10	p.G295Wfs*10	ENST00000381652	NM_004972.3	293	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	19	638	0	ENST00000269305.4:c.737T>A	p.Met246Lys	p.M246K	ENST00000269305	NM_001126112.2	246	aTg/aAg																																																																															
POLE	5426	MSKCC	GRCh37	12	133237689	133237689	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060500820		P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	224	630	1	ENST00000320574.5:c.2926C>T	p.Arg976Cys	p.R976C	ENST00000320574	NM_006231.2	976	Cgc/Tgc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246279	46246279	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	42	335	0	ENST00000334344.6:c.4373C>G	p.Ser1458Ter	p.S1458*	ENST00000334344	NM_152641.2	1458	tCa/tGa																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233073	69233073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	42	271	0	ENST00000462284.1:c.938C>T	p.Ser313Leu	p.S313L	ENST00000462284	NM_002392.5	313	tCa/tTa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179506	56179506	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	30	223	1	ENST00000399503.3:c.3819G>T	p.Gln1273His	p.Q1273H	ENST00000399503	NM_005921.1	1273	caG/caT																																																																															
PRDM1	639	MSKCC	GRCh37	6	106554352	106554352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	65	371	0	ENST00000369096.4:c.1880G>A	p.Gly627Glu	p.G627E	ENST00000369096	NM_001198.3	627	gGa/gAa																																																																															
SYK	6850	MSKCC	GRCh37	9	93650802	93650802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	72	308	0	ENST00000375746.1:c.1728G>A	p.Met576Ile	p.M576I	ENST00000375746	NM_001174167.1	576	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587782272		P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	185	560	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
MDM4	4194	MSKCC	GRCh37	1	204518706	204518706	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	28	269	0	ENST00000367182.3:c.1369C>G	p.Leu457Val	p.L457V	ENST00000367182	NM_001278516.1	457	Ctt/Gtt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41197783	41197783	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs273902776		P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	106	599	0	ENST00000357654.3:c.5504G>A	p.Arg1835Gln	p.R1835Q	ENST00000357654	NM_007294.3	1835	cGa/cAa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251857	212251857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	49	253	0	ENST00000342788.4:c.3202G>A	p.Asp1068Asn	p.D1068N	ENST00000342788	NM_005235.2	1068	Gat/Aat																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528930	157528930	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	76	509	0	ENST00000346085.5:c.6655G>T	p.Glu2219Ter	p.E2219*	ENST00000346085	NM_020732.3	2219	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579373	7579374	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	194	766	1	ENST00000269305.4:c.313_314delinsTT	p.Gly105Phe	p.G105F	ENST00000269305	NM_001126112.2	105	GGc/TTc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210843	2210843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	55	385	0	ENST00000398665.3:c.1340C>T	p.Ser447Phe	p.S447F	ENST00000398665	NM_032482.2	447	tCc/tTc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772605	135772605	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	64	468	0	ENST00000298552.3:c.2941G>C	p.Glu981Gln	p.E981Q	ENST00000298552	NM_001162426.1	981	Gaa/Caa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483899	88483899	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	93	693	0	ENST00000360948.2:c.1671C>G	p.Cys557Trp	p.C557W	ENST00000360948	NM_001012338.2	557	tgC/tgG																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719424	190719424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	25	288	0	ENST00000441310.2:c.1426G>C	p.Asp476His	p.D476H	ENST00000441310	NM_000534.4	476	Gat/Cat																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405688	139405688	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377353441		P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	426	829	0	ENST00000277541.6:c.2503C>T	p.Pro835Ser	p.P835S	ENST00000277541	NM_017617.3	835	Ccc/Tcc																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2493180	2493180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	102	702	0	ENST00000355716.4:c.620C>T	p.Ser207Leu	p.S207L	ENST00000355716	NM_003820.2	207	tCa/tTa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11300435	11300435	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	181	557	0	ENST00000361445.4:c.1711A>G	p.Thr571Ala	p.T571A	ENST00000361445	NM_004958.3	571	Acg/Gcg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16237688	16237688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	75	612	0	ENST00000375759.3:c.1135G>T	p.Gly379Cys	p.G379C	ENST00000375759	NM_015001.2	379	Ggt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16242772	16242772	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	51	424	0	ENST00000375759.3:c.1393G>T	p.Val465Leu	p.V465L	ENST00000375759	NM_015001.2	465	Gtg/Ttg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120478170	120478170	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	60	411	0	ENST00000256646.2:c.3580C>G	p.Gln1194Glu	p.Q1194E	ENST00000256646	NM_024408.3	1194	Cag/Gag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120478217	120478217	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	46	348	0	ENST00000256646.2:c.3533G>C	p.Gly1178Ala	p.G1178A	ENST00000256646	NM_024408.3	1178	gGc/gCc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731084	162731084	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	398	480	0	ENST00000367921.3:c.939G>A	p.Trp313Ter	p.W313*	ENST00000367921	NM_006182.2	313	tgG/tgA																																																																															
RET	5979	MSKCC	GRCh37	10	43615649	43615649	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	62	390	1	ENST00000355710.3:c.2728C>A	p.Gln910Lys	p.Q910K	ENST00000355710	NM_020975.4	910	Cag/Aag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851548	63851548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	149	561	0	ENST00000279873.7:c.2326G>A	p.Glu776Lys	p.E776K	ENST00000279873	NM_032199.2	776	Gag/Aag																																																																															
LMO1	4004	MSKCC	GRCh37	11	8248592	8248592	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	222	688	0	ENST00000335790.3:c.295G>T	p.Glu99Ter	p.E99*	ENST00000335790	NM_002315.2	99	Gag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108143494	108143494	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	44	415	0	ENST00000278616.4:c.3199G>C	p.Asp1067His	p.D1067H	ENST00000278616	NM_000051.3	1067	Gac/Cac																																																																															
CBL	867	MSKCC	GRCh37	11	119142578	119142578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	36	358	0	ENST00000264033.4:c.577G>T	p.Ala193Ser	p.A193S	ENST00000264033	NM_005188.3	193	Gct/Tct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420634	49420634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	200	605	0	ENST00000301067.7:c.15115G>T	p.Gly5039Cys	p.G5039C	ENST00000301067	NM_003482.3	5039	Ggt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425663	49425663	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	99	642	1	ENST00000301067.7:c.12825G>T	p.Gln4275His	p.Q4275H	ENST00000301067	NM_003482.3	4275	caG/caT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446082	49446082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1262	148	887	0	ENST00000301067.7:c.1384C>T	p.Pro462Ser	p.P462S	ENST00000301067	NM_003482.3	462	Cct/Tct																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562400	21562400	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	290	531	1	ENST00000382592.4:c.1519G>T	p.Gly507Ter	p.G507*	ENST00000382592	NM_014572.2	507	Gga/Tga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906746	32906746	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	94	625	0	ENST00000380152.3:c.1131G>T	p.Glu377Asp	p.E377D	ENST00000380152		377	gaG/gaT																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434572	99434572	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	77	458	0	ENST00000268035.6:c.659G>T	p.Gly220Val	p.G220V	ENST00000268035	NM_000875.3	220	gGg/gTg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99440040	99440040	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	77	402	0	ENST00000268035.6:c.1008G>C	p.Lys336Asn	p.K336N	ENST00000268035	NM_000875.3	336	aaG/aaC																																																																															
CYLD	1540	MSKCC	GRCh37	16	50785607	50785607	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	130	616	2	ENST00000398568.2:c.597G>T	p.Leu199Phe	p.L199F	ENST00000398568	NM_001042412.1	199	ttG/ttT																																																																															
NF1	4763	MSKCC	GRCh37	17	29556260	29556260	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	79	401	0	ENST00000358273.4:c.2627C>G	p.Ser876Cys	p.S876C	ENST00000358273	NM_001042492.2	876	tCt/tGt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37882819	37882819	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	82	549	0	ENST00000269571.5:c.2877G>A	p.Trp959Ter	p.W959*	ENST00000269571		959	tgG/tgA																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66519004	66519004	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	68	456	0	ENST00000358598.2:c.285G>T	p.Arg95Ser	p.R95S	ENST00000358598	NM_212471.2	95	agG/agT																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732438	74732515	+	inframe_deletion	In_Frame_Del	DEL	AGATCGAGAACGAGTGCGGGACCGAGACTTCGAGCGGCTGTAGCGAGATCGGCTGCGAGACCTGGAACGACTCCGACT	AGATCGAGAACGAGTGCGGGACCGAGACTTCGAGCGGCTGTAGCGAGATCGGCTGCGAGACCTGGAACGACTCCGACT	-			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	28	350	0	ENST00000359995.5:c.394_471del	p.Ser132_Ser157del	p.S132_S157del	ENST00000359995	NM_001195427.1	132	AGTCGGAGTCGTTCCAGGTCTCGCAGCCGATCTCGCTACAGCCGCTCGAAGTCTCGGTCCCGCACTCGTTCTCGATCT/-																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78681800	78681800	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	156	655	0	ENST00000306801.3:c.507+1G>T		p.X169_splice	ENST00000306801	NM_020761.2	169																																																																																
RPTOR	57521	MSKCC	GRCh37	17	78865623	78865623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	62	449	0	ENST00000306801.3:c.2087C>T	p.Ser696Phe	p.S696F	ENST00000306801	NM_020761.2	696	tCt/tTt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5239041	5239041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	261	759	0	ENST00000357368.4:c.1738G>T	p.Val580Leu	p.V580L	ENST00000357368	NM_002850.3	580	Gtg/Ttg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599915	10599915	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	244	672	1	ENST00000171111.5:c.1661G>T	p.Arg554Leu	p.R554L	ENST00000171111	NM_203500.1	554	cGa/cTa																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308438	30308438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	133	430	0	ENST00000262643.3:c.452G>T	p.Trp151Leu	p.W151L	ENST00000262643	NM_001238.2	151	tGg/tTg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637379	47637379	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	94	651	0	ENST00000233146.2:c.513G>C	p.Arg171Ser	p.R171S	ENST00000233146	NM_000251.2	171	agG/agC																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026125	48026125	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	186	352	0	ENST00000234420.5:c.1003A>T	p.Asn335Tyr	p.N335Y	ENST00000234420	NM_000179.2	335	Aat/Tat																																																																															
XPO1	7514	MSKCC	GRCh37	2	61706035	61706035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	66	504	0	ENST00000401558.2:c.3136G>A	p.Asp1046Asn	p.D1046N	ENST00000401558	NM_003400.3	1046	Gat/Aat																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248683	212248683	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	78	412	0	ENST00000342788.4:c.3584C>G	p.Pro1195Arg	p.P1195R	ENST00000342788	NM_005235.2	1195	cCa/cGa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812318	212812318	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	82	284	0	ENST00000342788.4:c.258C>A	p.Tyr86Ter	p.Y86*	ENST00000342788	NM_005235.2	86	taC/taA																																																																															
BARD1	580	MSKCC	GRCh37	2	215645645	215645645	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	187	476	1	ENST00000260947.4:c.953A>T	p.Asn318Ile	p.N318I	ENST00000260947	NM_000465.2	318	aAt/aTt																																																																															
INHA	3623	MSKCC	GRCh37	2	220440070	220440070	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1170	94	816	0	ENST00000243786.2:c.923C>A	p.Pro308His	p.P308H	ENST00000243786	NM_002191.3	308	cCt/cAt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371613	225371613	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	60	443	0	ENST00000264414.4:c.991G>T	p.Glu331Ter	p.E331*	ENST00000264414	NM_003590.4	331	Gaa/Taa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561172	9561172	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs774601283		P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	57	389	0	ENST00000353224.5:c.610G>T	p.Asp204Tyr	p.D204Y	ENST00000353224	NM_177990.2	204	Gac/Tac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770597	40770597	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	200	416	0	ENST00000373198.4:c.2785G>C	p.Asp929His	p.D929H	ENST00000373198	NM_133170.3	929	Gat/Cat																																																																															
EP300	2033	MSKCC	GRCh37	22	41545123	41545123	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	153	605	0	ENST00000263253.7:c.2323A>C	p.Met775Leu	p.M775L	ENST00000263253	NM_001429.3	775	Atg/Ctg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71102872	71102873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	55	334	0	ENST00000318789.4:c.334dup	p.Met112AsnfsTer37	p.M112Nfs*37	ENST00000318789	NM_032682.5	112	atg/aAtg																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72891482	72891482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	89	449	0	ENST00000325599.8:c.280C>G	p.Leu94Val	p.L94V	ENST00000325599	NM_018130.2	94	Ctt/Gtt																																																																															
ATR	545	MSKCC	GRCh37	3	142177876	142177876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	94	397	0	ENST00000350721.4:c.7427G>T	p.Arg2476Leu	p.R2476L	ENST00000350721	NM_001184.3	2476	cGt/cTt																																																																															
ATR	545	MSKCC	GRCh37	3	142269112	142269112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	56	327	0	ENST00000350721.4:c.2838G>A	p.Met946Ile	p.M946I	ENST00000350721	NM_001184.3	946	atG/atA																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170015149	170015149	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	72	582	0	ENST00000295797.4:c.1555C>A	p.His519Asn	p.H519N	ENST00000295797	NM_002740.5	519	Cac/Aac																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747970	41747970	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1446644422		P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	27	149	0	ENST00000226382.2:c.799G>T	p.Gly267Trp	p.G267W	ENST00000226382	NM_003924.3	267	Ggg/Tgg																																																																															
KDR	3791	MSKCC	GRCh37	4	55987283	55987283	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	59	387	1	ENST00000263923.4:c.142A>T	p.Thr48Ser	p.T48S	ENST00000263923	NM_002253.2	48	Act/Tct																																																																															
KDR	3791	MSKCC	GRCh37	4	55987326	55987326	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs149870540		P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	64	366	0	ENST00000263923.4:c.99G>T	p.Arg33Ser	p.R33S	ENST00000263923	NM_002253.2	33	agG/agT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627903	187627903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	93	649	0	ENST00000441802.2:c.3079G>A	p.Glu1027Lys	p.E1027K	ENST00000441802	NM_005245.3	1027	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1293898	1293898	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	114	890	0	ENST00000310581.5:c.1103C>G	p.Ser368Cys	p.S368C	ENST00000310581	NM_198253.2	368	tCc/tGc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31431779	31431779	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	39	305	0	ENST00000344624.3:c.3049G>C	p.Glu1017Gln	p.E1017Q	ENST00000344624		1017	Gaa/Caa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435808	149435808	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	115	604	0	ENST00000286301.3:c.2416G>C	p.Asp806His	p.D806H	ENST00000286301	NM_005211.3	806	Gac/Cac																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149441160	149441160	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	83	638	0	ENST00000286301.3:c.1754-2A>C		p.X585_splice	ENST00000286301	NM_005211.3	585																																																																																
NSD1	64324	MSKCC	GRCh37	5	176638624	176638624	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	117	660	0	ENST00000439151.2:c.3224G>T	p.Gly1075Val	p.G1075V	ENST00000439151	NM_022455.4	1075	gGa/gTa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176665268	176665268	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	45	298	0	ENST00000439151.2:c.3952C>G	p.Leu1318Val	p.L1318V	ENST00000439151	NM_022455.4	1318	Cta/Gta																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163761	152163761	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	70	415	0	ENST00000206249.3:c.482G>T	p.Gly161Val	p.G161V	ENST00000206249	NM_000125.3	161	gGc/gTc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739939	41739939	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1488241309		P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	36	429	0	ENST00000242208.4:c.34G>T	p.Ala12Ser	p.A12S	ENST00000242208	NM_002192.2	12	Gca/Tca																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513346	106513346	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	88	289	0	ENST00000359195.3:c.2250A>T	p.Lys750Asn	p.K750N	ENST00000359195	NM_002649.2	750	aaA/aaT																																																																															
NBN	4683	MSKCC	GRCh37	8	90976654	90976654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	82	369	0	ENST00000265433.3:c.978G>T	p.Gln326His	p.Q326H	ENST00000265433	NM_002485.4	326	caG/caT																																																																															
ABL1	25	MSKCC	GRCh37	9	133759992	133759992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	99	884	0	ENST00000318560.5:c.2315C>T	p.Ser772Phe	p.S772F	ENST00000318560	NM_005157.4	772	tCt/tTt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123227980	123227980	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs182467825		P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	85	196	0	ENST00000218089.9:c.3691A>G	p.Met1231Val	p.M1231V	ENST00000218089	NM_001042749.1	1231	Atg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0043153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	72	459	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579582	7579583	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	118	759	0	ENST00000269305.4:c.104dup	p.Leu35PhefsTer8	p.L35Ffs*8	ENST00000269305	NM_001126112.2	35	ttg/ttTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807919	3807919	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587783481		P-0043153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	114	557	0	ENST00000262367.5:c.3500A>G	p.Tyr1167Cys	p.Y1167C	ENST00000262367	NM_004380.2	1167	tAt/tGt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602438	10602438	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	193	944	0	ENST00000171111.5:c.1140G>C	p.Arg380Ser	p.R380S	ENST00000171111	NM_203500.1	380	agG/agC																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115267842	115267842	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0043153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	116	470	0	ENST00000438362.2:c.1891G>T	p.Val631Leu	p.V631L	ENST00000438362	NM_001242891.1	631	Gtg/Ttg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28895650	28895650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	91	601	0	ENST00000282397.4:c.3124G>T	p.Gly1042Cys	p.G1042C	ENST00000282397	NM_002019.4	1042	Ggc/Tgc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523023	25523023	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	94	885	0	ENST00000264709.3:c.162G>T	p.Lys54Asn	p.K54N	ENST00000264709	NM_175629.2	54	aaG/aaT																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913233		P-0043197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1331	78	772	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450405	50450405	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0043200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	112	416	0	ENST00000331340.3:c.589G>T	p.Val197Phe	p.V197F	ENST00000331340	NM_006060.4	197	Gtt/Ttt																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs113954997		P-0043200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	148	643	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																															
BTK	695	MSKCC	GRCh37	X	100612503	100612503	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	128	501	0	ENST00000308731.7:c.1171G>T	p.Gly391Ter	p.G391*	ENST00000308731	NM_000061.2	391	Gga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858114	9858114	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs773991023		P-0043200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	176	696	0	ENST00000330684.3:c.3287A>T	p.Lys1096Met	p.K1096M	ENST00000330684	NM_001134407.1	1096	aAg/aTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518304	187518304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	88	345	0	ENST00000441802.2:c.12390G>T	p.Glu4130Asp	p.E4130D	ENST00000441802	NM_005245.3	4130	gaG/gaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	617	464	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520253	176520253	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375466821		P-0043250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1415	129	737	0	ENST00000292408.4:c.1172G>A	p.Arg391Gln	p.R391Q	ENST00000292408	NM_213647.1	391	cGa/cAa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602337	10602337	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	396	846	0	ENST00000171111.5:c.1241A>T	p.Asn414Ile	p.N414I	ENST00000171111	NM_203500.1	414	aAc/aTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40899067	40899067	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	191	662	0	ENST00000373198.4:c.2203C>A	p.Pro735Thr	p.P735T	ENST00000373198	NM_133170.3	735	Ccg/Acg																																																																															
FH	2271	MSKCC	GRCh37	1	241667495	241667495	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	116	298	0	ENST00000366560.3:c.955G>T	p.Asp319Tyr	p.D319Y	ENST00000366560	NM_000143.3	319	Gac/Tac																																																																															
TSHR	7253	MSKCC	GRCh37	14	81554335	81554335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	73	379	0	ENST00000298171.2:c.355C>A	p.Pro119Thr	p.P119T	ENST00000298171	NM_000369.2	119	Cct/Act																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576259	88576259	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	222	481	0	ENST00000360948.2:c.1414A>T	p.Ser472Cys	p.S472C	ENST00000360948	NM_001012338.2	472	Agt/Tgt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857196	9857196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	132	531	0	ENST00000330684.3:c.4205G>T	p.Arg1402Leu	p.R1402L	ENST00000330684	NM_001134407.1	1402	cGg/cTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89371673	89371673	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	126	759	0	ENST00000301030.4:c.167G>C	p.Ser56Thr	p.S56T	ENST00000301030	NM_001256183.1	56	aGc/aCc																																																																															
AR	367	MSKCC	GRCh37	X	66765473	66765473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	226	788	0	ENST00000374690.3:c.485C>A	p.Ser162Tyr	p.S162Y	ENST00000374690	NM_000044.3	162	tCc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577560	7577560	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057520002		P-0043251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	109	603	0	ENST00000269305.4:c.721T>C	p.Ser241Pro	p.S241P	ENST00000269305	NM_001126112.2	241	Tcc/Ccc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163315582	163315582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	46	304	2	ENST00000271452.3:c.922G>A	p.Glu308Lys	p.E308K	ENST00000271452	NM_145697.2	308	Gaa/Aaa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470580	25470580	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	106	767	0	ENST00000264709.3:c.894del	p.Lys299AsnfsTer17	p.K299Nfs*17	ENST00000264709	NM_175629.2	298	ggG/gg																																																																															
KIT	3815	MSKCC	GRCh37	4	55561780	55561780	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	73	382	0	ENST00000288135.5:c.170T>C	p.Leu57Ser	p.L57S	ENST00000288135	NM_000222.2	57	tTa/tCa																																																																															
CBL	867	MSKCC	GRCh37	11	119156221	119156221	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	94	513	0	ENST00000264033.4:c.1886A>T	p.Glu629Val	p.E629V	ENST00000264033	NM_005188.3	629	gAg/gTg																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626932	14626932	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	92	681	0	ENST00000254322.2:c.843A>G	p.Ile281Met	p.I281M	ENST00000254322	NM_006145.1	281	atA/atG																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306526	41306526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	177	495	0	ENST00000373198.4:c.1133C>T	p.Thr378Ile	p.T378I	ENST00000373198	NM_133170.3	378	aCc/aTc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755522	57755522	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	45	404	0	ENST00000274289.3:c.265G>C	p.Gly89Arg	p.G89R	ENST00000274289	NM_006622.3	89	Gga/Cga																																																																															
APC	324	MSKCC	GRCh37	5	112175334	112175335	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	71	230	0	ENST00000257430.4:c.4043_4044insA	p.His1349AlafsTer5	p.H1349Afs*5	ENST00000257430	NM_000038.5	1348	agg/agAg																																																																															
SESN3	143686	MSKCC	GRCh37	11	94917759	94917759	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	218	350	0	ENST00000536441.1:c.763-1G>C		p.X255_splice	ENST00000536441	NM_144665.3	255																																																																																
TP53BP1	7158	MSKCC	GRCh37	15	43699623	43699623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	238	610	0	ENST00000382044.4:c.5892C>G	p.Phe1964Leu	p.F1964L	ENST00000382044	NM_001141980.1	1964	ttC/ttG																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821182	72821182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	250	648	0	ENST00000268489.5:c.10993G>A	p.Asp3665Asn	p.D3665N	ENST00000268489	NM_006885.3	3665	Gac/Aac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880998	37880998	+	protein_altering_variant	In_Frame_Ins	INS	G	G	TTGT			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	253	717	0	ENST00000269571.5:c.2327delinsTTGT	p.Gly776delinsValVal	p.G776delinsVV	ENST00000269571		776	gGt/gTTGTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220450	1220452	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	244	779	0	ENST00000326873.7:c.543_545del	p.Asn181_Leu182delinsLys	p.N181_L182delinsK	ENST00000326873	NM_000455.4	181	aaCCTg/aag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250915	10250915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	235	702	0	ENST00000340748.4:c.3565G>A	p.Glu1189Lys	p.E1189K	ENST00000340748		1189	Gag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152041	11152041	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	215	556	0	ENST00000344626.4:c.4229C>A	p.Ser1410Ter	p.S1410*	ENST00000344626	NM_003072.3	1410	tCa/tAa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26029132	26029132	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	179	417	0	ENST00000435504.4:c.218A>C	p.Lys73Thr	p.K73T	ENST00000435504		73	aAg/aCg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52675997	52675997	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	245	619	0	ENST00000394830.3:c.1060G>C	p.Glu354Gln	p.E354Q	ENST00000394830	NM_018313.4	354	Gaa/Caa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52676053	52676053	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	131	329	0	ENST00000394830.3:c.1004G>C	p.Arg335Thr	p.R335T	ENST00000394830	NM_018313.4	335	aGa/aCa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117866654	117866654	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	139	540	0	ENST00000297338.2:c.991G>A	p.Glu331Lys	p.E331K	ENST00000297338	NM_006265.2	331	Gag/Aag																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080532	5080532	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	83	289	0	ENST00000381652.3:c.2284-1G>A		p.X762_splice	ENST00000381652	NM_004972.3	762																																																																																
CRLF2	64109	MSKCC	GRCh37	X	1325449	1325449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	261	698	0	ENST00000381566.1:c.226C>T	p.Leu76Phe	p.L76F	ENST00000381566		76	Ctc/Ttc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222205	53222205	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	233	722	0	ENST00000375401.3:c.4627C>G	p.Leu1543Val	p.L1543V	ENST00000375401	NM_004187.3	1543	Ctg/Gtg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43772110	43772110	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756804341		P-0043335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	229	662	0	ENST00000382044.4:c.605C>T	p.Ser202Leu	p.S202L	ENST00000382044	NM_001141980.1	202	tCa/tTa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946381	71946463	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCAACAGTTCCTGACCTTCCTATCCCACCGTGGCGAGGAGACAGGCAATATCAGAGGCTCCATGAAGGTGCGGGTGCCCAC	GCCCAACAGTTCCTGACCTTCCTATCCCACCGTGGCGAGGAGACAGGCAATATCAGAGGCTCCATGAAGGTGCGGGTGCCCAC	-			P-0043335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	120	795	0	ENST00000298229.2:c.2546_2628del	p.Ala849GlyfsTer7	p.A849Gfs*7	ENST00000298229	NM_001567.3	849	GCCCAACAGTTCCTGACCTTCCTATCCCACCGTGGCGAGGAGACAGGCAATATCAGAGGCTCCATGAAGGTGCGGGTGCCCACg/g																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18658344	18658344	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs764493941		P-0043335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	114	437	0	ENST00000266497.5:c.3149T>C	p.Ile1050Thr	p.I1050T	ENST00000266497		1050	aTt/aCt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821063	72821063	+	stop_lost	Nonstop_Mutation	SNP	T	T	A			P-0043335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	224	581	0	ENST00000268489.5:c.11112A>T	p.Ter3704TyrextTer10	p.*3704Yext*10	ENST00000268489	NM_006885.3	3704	taA/taT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578320	7578464	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCG	TGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCG	-			P-0043335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	189	567	0	ENST00000269305.4:c.466_560-31del		p.X156_splice	ENST00000269305	NM_001126112.2	156																																																																																
POLD1	5424	MSKCC	GRCh37	19	50905095	50905095	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	81	668	0	ENST00000440232.2:c.377G>T	p.Arg126Leu	p.R126L	ENST00000440232	NM_002691.3	126	cGc/cTc																																																																															
ALK	238	MSKCC	GRCh37	2	29543672	29543672	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	135	631	0	ENST00000389048.3:c.1491C>A	p.His497Gln	p.H497Q	ENST00000389048	NM_004304.4	497	caC/caA																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248766	212248766	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	58	282	0	ENST00000342788.4:c.3501G>C	p.Glu1167Asp	p.E1167D	ENST00000342788	NM_005235.2	1167	gaG/gaC																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946421	2946421	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	136	710	0	ENST00000396946.4:c.3316A>C	p.Lys1106Gln	p.K1106Q	ENST00000396946	NM_032415.4	1106	Aag/Cag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8633371	8633371	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	104	544	0	ENST00000356435.5:c.298G>C	p.Ala100Pro	p.A100P	ENST00000356435		100	Gcc/Ccc																																																																															
SYK	6850	MSKCC	GRCh37	9	93639988	93639988	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	157	412	0	ENST00000375746.1:c.1317C>A	p.Cys439Ter	p.C439*	ENST00000375746	NM_001174167.1	439	tgC/tgA																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410088	139410088	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	212	742	0	ENST00000277541.6:c.1750G>T	p.Val584Phe	p.V584F	ENST00000277541	NM_017617.3	584	Gtc/Ttc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0043353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	318	576	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912655		P-0043353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	164	584	0	ENST00000269305.4:c.725G>C	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	tGc/tCc																																																																															
JUN	3725	MSKCC	GRCh37	1	59247920	59247920	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	146	724	0	ENST00000371222.2:c.823G>T	p.Glu275Ter	p.E275*	ENST00000371222	NM_002228.3	275	Gag/Tag																																																																															
FH	2271	MSKCC	GRCh37	1	241661202	241661202	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1391195810		P-0043353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	51	562	0	ENST00000366560.3:c.1459A>G	p.Ile487Val	p.I487V	ENST00000366560	NM_000143.3	487	Atc/Gtc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112565	115112565	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1214834962		P-0043353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	95	652	0	ENST00000257566.3:c.1175C>T	p.Ala392Val	p.A392V	ENST00000257566	NM_016569.3	392	gCg/gTg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42842662	42842663	+	missense_variant	Missense_Mutation	DNP	TC	TC	CA			P-0043353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	44	558	2	ENST00000398585.3:c.1194_1195delinsTG	p.Lys399Glu	p.K399E	ENST00000398585	NM_001135099.1	398	gtGAaa/gtTGaa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52584469	52584469	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	95	502	0	ENST00000394830.3:c.4544del	p.Asn1515ThrfsTer32	p.N1515Tfs*32	ENST00000394830	NM_018313.4	1515	aAc/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	147	302	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	431	508	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085729	16085729	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	192	489	0	ENST00000281043.3:c.905G>T	p.Arg302Leu	p.R302L	ENST00000281043	NM_005378.4	302	cGt/cTt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162725019	162725019	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	336	352	0	ENST00000367921.3:c.491T>C	p.Val164Ala	p.V164A	ENST00000367921	NM_006182.2	164	gTc/gCc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427974	49427974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	195	550	0	ENST00000301067.7:c.10616G>T	p.Arg3539Leu	p.R3539L	ENST00000301067	NM_003482.3	3539	cGg/cTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120864	115120864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	172	448	0	ENST00000257566.3:c.142C>A	p.Pro48Thr	p.P48T	ENST00000257566	NM_016569.3	48	Ccc/Acc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88690606	88690606	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	153	339	0	ENST00000360948.2:c.424C>G	p.Leu142Val	p.L142V	ENST00000360948	NM_001012338.2	142	Ctc/Gtc																																																																															
STK11	6794	MSKCC	GRCh37	19	1218444	1218444	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	270	497	0	ENST00000326873.7:c.319del	p.His107ThrfsTer22	p.H107Tfs*22	ENST00000326873	NM_000455.4	107	Cac/ac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602629	10602635	+	frameshift_variant	Frame_Shift_Del	DEL	TCACCTG	TCACCTG	-			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	399	548	0	ENST00000171111.5:c.943_949del	p.Gln315CysfsTer11	p.Q315Cfs*11	ENST00000171111	NM_203500.1	315	CAGGTGAtg/tg																																																																															
ALK	238	MSKCC	GRCh37	2	29917752	29917752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	242	553	0	ENST00000389048.3:c.916G>T	p.Gly306Trp	p.G306W	ENST00000389048	NM_004304.4	306	Ggg/Tgg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31393146	31393146	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	111	269	0	ENST00000328111.2:c.2234C>T	p.Pro745Leu	p.P745L	ENST00000328111	NM_006892.3	745	cCc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112170726	112170726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	169	390	1	ENST00000257430.4:c.1822G>A	p.Ala608Thr	p.A608T	ENST00000257430	NM_000038.5	608	Gct/Act																																																																															
APC	324	MSKCC	GRCh37	5	112170808	112170808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	182	425	0	ENST00000257430.4:c.1904G>A	p.Gly635Glu	p.G635E	ENST00000257430	NM_000038.5	635	gGa/gAa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513541	149513541	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	199	498	1	ENST00000261799.4:c.662T>A	p.Val221Glu	p.V221E	ENST00000261799	NM_002609.3	221	gTg/gAg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165215	32165215	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	467	595	0	ENST00000375023.3:c.4913T>A	p.Leu1638Gln	p.L1638Q	ENST00000375023	NM_004557.3	1638	cTg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043499-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			330	60	375	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0043499-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			667	94	579	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs137853076		P-0043499-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			992	251	753	0	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81334734	81334734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043499-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			299	27	463	0	ENST00000222390.5:c.1982C>A	p.Ala661Asp	p.A661D	ENST00000222390	NM_000601.4	661	gCt/gAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610112	10610113	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043499-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			935	155	591	0	ENST00000171111.5:c.597dup	p.His200AlafsTer150	p.H200Afs*150	ENST00000171111	NM_203500.1	199	-/G																																																																															
APC	324	MSKCC	GRCh37	5	112175657	112175660	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0043499-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			318	78	340	0	ENST00000257430.4:c.4366_4369del	p.Lys1456HisfsTer16	p.K1456Hfs*16	ENST00000257430	NM_000038.5	1456	AAAGca/ca																																																																															
FLT1	2321	MSKCC	GRCh37	13	28908204	28908204	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0043499-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	87	450	0	ENST00000282397.4:c.2551A>T	p.Lys851Ter	p.K851*	ENST00000282397	NM_002019.4	851	Aaa/Taa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610669	81610669	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043499-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	48	377	0	ENST00000298171.2:c.2267C>A	p.Ser756Ter	p.S756*	ENST00000298171	NM_000369.2	756	tCa/tAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043502-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			214	80	369	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039371	47039371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043502-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			572	63	622	0	ENST00000329236.7:c.763C>T	p.Arg255Cys	p.R255C	ENST00000329236	NM_001204466.1	255	Cgc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220371	1220372	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0043502-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			299	119	409	0	ENST00000326873.7:c.465-1_465delinsTT		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0043502-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			290	160	501	1	ENST00000269305.4:c.560-2A>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
FANCA	2175	MSKCC	GRCh37	16	89805306	89805306	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs201658945		P-0043502-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	141	491	0	ENST00000389301.3:c.4244T>G	p.Phe1415Cys	p.F1415C	ENST00000389301	NM_000135.2	1415	tTc/tGc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652396	48652396	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs202091014		P-0043502-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			632	95	696	0	ENST00000376670.3:c.1067G>T	p.Gly356Val	p.G356V	ENST00000376670	NM_002049.3	356	gGc/gTc																																																																															
MED12	9968	MSKCC	GRCh37	X	70357208	70357208	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043502-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			492	138	504	0	ENST00000374080.3:c.5723G>T	p.Gly1908Val	p.G1908V	ENST00000374080		1908	gGa/gTa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123220447	123220447	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043502-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	86	415	0	ENST00000218089.9:c.3104A>C	p.Glu1035Ala	p.E1035A	ENST00000218089	NM_001042749.1	1035	gAg/gCg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0043503-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			221	176	321	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043503-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			409	251	555	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0043503-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	257	406	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144180	11144180	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043503-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			699	233	687	0	ENST00000344626.4:c.3761A>C	p.Glu1254Ala	p.E1254A	ENST00000344626	NM_003072.3	1254	gAg/gCg																																																																															
RB1	5925	MSKCC	GRCh37	13	49033955	49033955	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043503-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			215	112	312	0	ENST00000267163.4:c.2092A>G	p.Arg698Gly	p.R698G	ENST00000267163	NM_000321.2	698	Agg/Ggg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174417	11174417	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043503-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			515	348	690	0	ENST00000361445.4:c.7258G>C	p.Ala2420Pro	p.A2420P	ENST00000361445	NM_004958.3	2420	Gcc/Ccc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396471	30396471	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043503-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			668	166	456	1	ENST00000331968.5:c.248C>A	p.Ser83Tyr	p.S83Y	ENST00000331968	NM_002742.2	83	tCc/tAc																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873209	136873209	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1333957805		P-0043503-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			351	36	331	0	ENST00000241393.3:c.289G>A	p.Asp97Asn	p.D97N	ENST00000241393	NM_003467.2	97	Gat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	39	374	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs878853247		P-0043646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	125	838	0	ENST00000326873.7:c.709G>T	p.Asp237Tyr	p.D237Y	ENST00000326873	NM_000455.4	237	Gac/Tac																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957880	1957880	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	105	519	0	ENST00000382895.3:c.2846A>G	p.Gln949Arg	p.Q949R	ENST00000382895	NM_133330.2	949	cAg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039651	47039651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	82	797	0	ENST00000329236.7:c.869C>T	p.Pro290Leu	p.P290L	ENST00000329236	NM_001204466.1	290	cCa/cTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057904	27057904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	103	593	0	ENST00000324856.7:c.1612C>T	p.Gln538Ter	p.Q538*	ENST00000324856	NM_006015.4	538	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs764146326		P-0043826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1257	109	656	0	ENST00000269305.4:c.841G>T	p.Asp281Tyr	p.D281Y	ENST00000269305	NM_001126112.2	281	Gac/Tac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1174	85	586	1	ENST00000171111.5:c.959G>A	p.Arg320Gln	p.R320Q	ENST00000171111	NM_203500.1	320	cGg/cAg																																																																															
BRAF	673	MSKCC	GRCh37	7	140481397	140481397	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913376		P-0043826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	24	316	0	ENST00000288602.6:c.1411G>T	p.Val471Phe	p.V471F	ENST00000288602	NM_004333.4	471	Gtc/Ttc																																																																															
CBFB	865	MSKCC	GRCh37	16	67132644	67132644	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	47	450	0	ENST00000412916.2:c.528del	p.Asn177IlefsTer2	p.N177Ifs*2	ENST00000412916		176	tCc/tc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207074	1207075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCC			P-0043826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1350	76	670	0	ENST00000326873.7:c.163_164insCCCC	p.Leu55ProfsTer109	p.L55Pfs*109	ENST00000326873	NM_000455.4	54	-/CCCC																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876502	35876502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	55	429	0	ENST00000303115.3:c.1294G>T	p.Ala432Ser	p.A432S	ENST00000303115	NM_002185.3	432	Gct/Tct																																																																															
EZH2	2146	MSKCC	GRCh37	7	148513801	148513801	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	47	431	0	ENST00000320356.2:c.1480C>G	p.Pro494Ala	p.P494A	ENST00000320356	NM_004456.4	494	Cca/Gca																																																																															
FLT4	2324	MSKCC	GRCh37	5	180041149	180041149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	64	659	0	ENST00000261937.6:c.3250G>A	p.Glu1084Lys	p.E1084K	ENST00000261937	NM_182925.4	1084	Gaa/Aaa																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112771502	112771502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	51	477	1	ENST00000369452.4:c.1675C>T	p.Gln559Ter	p.Q559*	ENST00000369452	NM_007373.3	559	Cag/Tag																																																																															
EED	8726	MSKCC	GRCh37	11	85966264	85966264	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0043854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	33	209	0	ENST00000263360.6:c.361G>T	p.Val121Phe	p.V121F	ENST00000263360	NM_003797.3	121	Gtt/Ttt																																																																															
RAD52	5893	MSKCC	GRCh37	12	1039254	1039254	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0043854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	87	514	0	ENST00000358495.3:c.243C>G	p.Tyr81Ter	p.Y81*	ENST00000358495	NM_134424.2	81	taC/taG																																																																															
RAD52	5893	MSKCC	GRCh37	12	1039292	1039292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	88	480	0	ENST00000358495.3:c.205C>T	p.His69Tyr	p.H69Y	ENST00000358495	NM_134424.2	69	Cat/Tat																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732489	74732489	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	19	254	0	ENST00000359995.5:c.420C>G	p.Ser140Arg	p.S140R	ENST00000359995	NM_001195427.1	140	agC/agG																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78727894	78727894	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778029024		P-0043854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	54	543	0	ENST00000306801.3:c.739G>A	p.Glu247Lys	p.E247K	ENST00000306801	NM_020761.2	247	Gag/Aag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52623230	52623230	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	77	293	0	ENST00000394830.3:c.2821T>G	p.Ser941Ala	p.S941A	ENST00000394830	NM_018313.4	941	Tca/Gca																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683688	162683688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	59	449	0	ENST00000366898.1:c.281G>A	p.Gly94Asp	p.G94D	ENST00000366898	NM_004562.2	94	gGc/gAc																																																																															
LYN	4067	MSKCC	GRCh37	8	56866474	56866474	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	69	602	0	ENST00000519728.1:c.721G>T	p.Glu241Ter	p.E241*	ENST00000519728	NM_002350.3	241	Gag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045567	47045567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	55	523	0	ENST00000329236.7:c.2300C>T	p.Ser767Phe	p.S767F	ENST00000329236	NM_001204466.1	767	tCt/tTt																																																																															
MED12	9968	MSKCC	GRCh37	X	70356385	70356385	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	52	541	1	ENST00000374080.3:c.5280G>C	p.Glu1760Asp	p.E1760D	ENST00000374080		1760	gaG/gaC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0043869-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			582	206	597	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104893810		P-0043869-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			35	434	338	1	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108236059	108236059	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043869-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			223	135	454	0	ENST00000278616.4:c.8995G>C	p.Asp2999His	p.D2999H	ENST00000278616	NM_000051.3	2999	Gac/Cac																																																																															
ATM	472	MSKCC	GRCh37	11	108236120	108236120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043869-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	269	534	0	ENST00000278616.4:c.9056G>A	p.Gly3019Glu	p.G3019E	ENST00000278616	NM_000051.3	3019	gGa/gAa																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250614	26250614	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043869-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			23	162	581	0	ENST00000446824.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000446824	NM_021018.2	74	Gag/Cag																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0043962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	139	672	0	ENST00000397752.3:c.3028+1del		p.D1010fs	ENST00000397752	NM_000245.2	1010	Gat/at																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363636	40363637	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	29	395	0	ENST00000397332.2:c.592dup	p.Glu198GlyfsTer4	p.E198Gfs*4	ENST00000397332	NM_001033082.2	198	gaa/gGaa																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40379639	40379639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	85	706	0	ENST00000293328.3:c.193G>A	p.Val65Met	p.V65M	ENST00000293328	NM_012448.3	65	Gtg/Atg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030774	48030774	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs752164796		P-0043962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	38	315	0	ENST00000234420.5:c.3388G>C	p.Val1130Leu	p.V1130L	ENST00000234420	NM_000179.2	1130	Gtg/Ctg																																																																															
NBN	4683	MSKCC	GRCh37	8	90983407	90983407	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	24	202	0	ENST00000265433.3:c.696del	p.Lys233AsnfsTer6	p.K233Nfs*6	ENST00000265433	NM_002485.4	232	gcC/gc																																																																															
MED12	9968	MSKCC	GRCh37	X	70347184	70347184	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0043962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	80	531	0	ENST00000374080.3:c.2850-2A>T		p.X950_splice	ENST00000374080		950																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs760640852		P-0044013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	35	315	1	ENST00000304494.5:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000304494	NM_000077.4	74	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7573010	7573010	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs587781664		P-0044013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	24	253	0	ENST00000269305.4:c.1101-2A>G		p.X367_splice	ENST00000269305	NM_001126112.2	367																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11132565	11132565	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	49	586	0	ENST00000344626.4:c.2782del	p.Leu928CysfsTer22	p.L928Cfs*22	ENST00000344626	NM_003072.3	927	ttC/tt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0044016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	137	441	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0044016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	91	672	0	ENST00000329236.7:c.1459+1G>T		p.X487_splice	ENST00000329236	NM_001204466.1	487																																																																																
TP53	7157	MSKCC	GRCh37	17	7579529	7579530	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	161	702	0	ENST00000269305.4:c.157dup	p.Trp53LeufsTer4	p.W53Lfs*4	ENST00000269305	NM_001126112.2	53	tgg/tTgg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120493413	120493413	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	67	389	0	ENST00000256646.2:c.2413C>A	p.Leu805Met	p.L805M	ENST00000256646	NM_024408.3	805	Ctg/Atg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437599	110437599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	143	708	0	ENST00000375856.3:c.802G>T	p.Gly268Cys	p.G268C	ENST00000375856	NM_003749.2	268	Ggc/Tgc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9984880	9984880	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	54	506	0	ENST00000330684.3:c.1085T>C	p.Val362Ala	p.V362A	ENST00000330684	NM_001134407.1	362	gTg/gCg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0044017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	131	297	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0044017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	80	602	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0044017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	162	595	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0044017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	20	601	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
B2M	567	MSKCC	GRCh37	15	45007802	45007802	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0044017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	30	271	0	ENST00000558401.1:c.249T>G	p.Tyr83Ter	p.Y83*	ENST00000558401	NM_004048.2	83	taT/taG																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0044020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	67	280	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	40	295	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0044020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	105	576	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265479	152265479	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766779326		P-0044020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	63	438	0	ENST00000206249.3:c.932C>T	p.Thr311Met	p.T311M	ENST00000206249	NM_000125.3	311	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175346	112175350	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAA	TTGAA	-			P-0044020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	73	185	0	ENST00000257430.4:c.4057_4061del	p.Glu1353PhefsTer20	p.E1353Ffs*20	ENST00000257430	NM_000038.5	1352	gTTGAA/g																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871727	35871727	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781464425		P-0044020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	107	411	1	ENST00000216797.5:c.779G>A	p.Arg260His	p.R260H	ENST00000216797	NM_020529.2	260	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245459	153245459	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	63	406	0	ENST00000281708.4:c.1732A>C	p.Thr578Pro	p.T578P	ENST00000281708	NM_033632.3	578	Aca/Cca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934578		P-0044046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	136	539	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0044046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	212	426	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519996		P-0044046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	285	627	2	ENST00000269305.4:c.395A>T	p.Lys132Met	p.K132M	ENST00000269305	NM_001126112.2	132	aAg/aTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42005561	42005566	+	inframe_deletion	In_Frame_Del	DEL	TCAGAG	TCAGAG	-			P-0044046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	89	451	0	ENST00000219905.7:c.3297_3302del	p.Phe1099_Arg1101delinsLeu	p.F1099_R1101delinsL	ENST00000219905	NM_001164273.1	1099	ttTCAGAGg/ttg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117678048	117678048	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	56	305	0	ENST00000368508.3:c.3885del	p.Phe1295LeufsTer37	p.F1295Lfs*37	ENST00000368508	NM_002944.2	1295	ttT/tt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239970	53239970	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	206	608	0	ENST00000375401.3:c.1471A>G	p.Asn491Asp	p.N491D	ENST00000375401	NM_004187.3	491	Aat/Gat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	68	420	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	134	779	2	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239876	53239876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	100	642	0	ENST00000375401.3:c.1565C>T	p.Ser522Phe	p.S522F	ENST00000375401	NM_004187.3	522	tCc/tTc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67462920	67462920	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202094530		P-0044096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	150	600	0	ENST00000327367.4:c.636G>A	p.Met212Ile	p.M212I	ENST00000327367	NM_005902.3	212	atG/atA																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175956144	175956144	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	73	398	0	ENST00000367669.3:c.2068G>C	p.Asp690His	p.D690H	ENST00000367669	NM_022457.5	690	Gac/Cac																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99439991	99439991	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	48	348	0	ENST00000268035.6:c.959A>G	p.Tyr320Cys	p.Y320C	ENST00000268035	NM_000875.3	320	tAc/tGc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11100042	11100042	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	127	797	2	ENST00000344626.4:c.1168G>T	p.Gly390Trp	p.G390W	ENST00000344626	NM_003072.3	390	Ggg/Tgg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635217	87635217	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746097417		P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	186	627	2	ENST00000277120.3:c.2269G>A	p.Val757Ile	p.V757I	ENST00000277120		757	Gtc/Atc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425503	49425503	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1348	157	932	0	ENST00000301067.7:c.12985C>T	p.Gln4329Ter	p.Q4329*	ENST00000301067	NM_003482.3	4329	Cag/Tag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178569	32178569	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1252701920		P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	427	707	0	ENST00000375023.3:c.2825G>A	p.Gly942Glu	p.G942E	ENST00000375023	NM_004557.3	942	gGg/gAg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533631	63533631	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	204	897	0	ENST00000307078.5:c.1523A>T	p.Lys508Met	p.K508M	ENST00000307078	NM_004655.3	508	aAg/aTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118347695	118347695	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	96	340	0	ENST00000534358.1:c.3332A>G	p.Asp1111Gly	p.D1111G	ENST00000534358	NM_005933.3	1111	gAt/gGt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30047491	30047491	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	36	394	0	ENST00000331968.5:c.2510C>G	p.Pro837Arg	p.P837R	ENST00000331968	NM_002742.2	837	cCt/cGt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786138	3786138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	173	817	0	ENST00000262367.5:c.4627G>A	p.Asp1543Asn	p.D1543N	ENST00000262367	NM_004380.2	1543	Gat/Aat																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121207	11121207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	261	656	0	ENST00000344626.4:c.2274G>T	p.Gln758His	p.Q758H	ENST00000344626	NM_003072.3	758	caG/caT																																																																															
XPO1	7514	MSKCC	GRCh37	2	61710170	61710170	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	49	325	0	ENST00000401558.2:c.2734C>T	p.Gln912Ter	p.Q912*	ENST00000401558	NM_003400.3	912	Cag/Tag																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872504	136872504	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	29	292	0	ENST00000241393.3:c.994G>T	p.Gly332Ter	p.G332*	ENST00000241393	NM_003467.2	332	Gga/Tga																																																																															
NF2	4771	MSKCC	GRCh37	22	30077552	30077552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	207	476	0	ENST00000338641.4:c.1699G>T	p.Asp567Tyr	p.D567Y	ENST00000338641	NM_000268.3	567	Gac/Tac																																																																															
SOX2	6657	MSKCC	GRCh37	3	181431070	181431070	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	424	682	0	ENST00000325404.1:c.922del	p.Ile308LeufsTer63	p.I308Lfs*63	ENST00000325404	NM_003106.3	308	Att/tt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417569	139417569	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	435	939	2	ENST00000277541.6:c.475G>T	p.Glu159Ter	p.E159*	ENST00000277541	NM_017617.3	159	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578448	7578452	+	missense_variant	Missense_Mutation	ONP	GCCAT	GCCAT	CCCAG			P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	237	885	0	ENST00000269305.4:c.478_482delinsCTGGG	p.Met160_Ala161delinsLeuGly	p.M160_A161delinsLG	ENST00000269305	NM_001126112.2	160	ATGGCc/CTGGGc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64126867	64126867	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749166781		P-0044207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	57	746	0	ENST00000334205.4:c.73G>A	p.Glu25Lys	p.E25K	ENST00000334205	NM_003942.2	25	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121912666		P-0044207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	159	641	0	ENST00000269305.4:c.659A>C	p.Tyr220Ser	p.Y220S	ENST00000269305	NM_001126112.2	220	tAt/tCt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584709	48584709	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0044207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	32	311	0	ENST00000342988.3:c.788-1G>C		p.X263_splice	ENST00000342988	NM_005359.5	263																																																																																
GATA2	2624	MSKCC	GRCh37	3	128199918	128199918	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	57	530	0	ENST00000341105.2:c.1387T>A	p.Ser463Thr	p.S463T	ENST00000341105	NM_032638.4	463	Tcc/Acc																																																																															
TET1	80312	MSKCC	GRCh37	10	70451305	70451305	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	108	567	0	ENST00000373644.4:c.6145T>C	p.Tyr2049His	p.Y2049H	ENST00000373644	NM_030625.2	2049	Tac/Cac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878158	151878158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	66	454	0	ENST00000262189.6:c.6787G>A	p.Gly2263Ser	p.G2263S	ENST00000262189	NM_170606.2	2263	Ggc/Agc																																																																															
NBN	4683	MSKCC	GRCh37	8	90958459	90958459	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs201781110		P-0044207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	32	279	0	ENST00000265433.3:c.1979G>C	p.Arg660Thr	p.R660T	ENST00000265433	NM_002485.4	660	aGa/aCa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	70	423	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	27	241	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231296	98231296	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	75	450	0	ENST00000331920.6:c.1987C>T	p.Gln663Ter	p.Q663*	ENST00000331920	NM_000264.3	663	Cag/Tag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729662	162729662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	93	435	1	ENST00000367921.3:c.748G>T	p.Val250Leu	p.V250L	ENST00000367921	NM_006182.2	250	Gtg/Ttg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974783	21974783	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876658556		P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	26	109	0	ENST00000304494.5:c.44G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tGg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1202793339		P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	97	476	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
EGFR	1956	MSKCC	GRCh37	7	55268927	55268927	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1289194907		P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	74	480	0	ENST00000275493.2:c.2993A>G	p.Tyr998Cys	p.Y998C	ENST00000275493	NM_005228.3	998	tAc/tGc																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944761	31944761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	44	147	0	ENST00000340398.3:c.340G>T	p.Ala114Ser	p.A114S	ENST00000340398	NM_001013699.2	114	Gct/Tct																																																																															
POLE	5426	MSKCC	GRCh37	12	133209331	133209331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	201	373	0	ENST00000320574.5:c.6055G>T	p.Ala2019Ser	p.A2019S	ENST00000320574	NM_006231.2	2019	Gct/Tct																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061474	38061474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	72	321	0	ENST00000250448.2:c.515C>T	p.Pro172Leu	p.P172L	ENST00000250448	NM_004496.3	172	cCc/cTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857969	9857969	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs746900457		P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	102	395	0	ENST00000330684.3:c.3432C>A	p.Asn1144Lys	p.N1144K	ENST00000330684	NM_001134407.1	1144	aaC/aaA																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641440	23641440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	78	554	0	ENST00000261584.4:c.2035C>G	p.Pro679Ala	p.P679A	ENST00000261584	NM_024675.3	679	Cca/Gca																																																																															
ERF	2077	MSKCC	GRCh37	19	42752720	42752720	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	74	476	0	ENST00000222329.4:c.1544G>T	p.Gly515Val	p.G515V	ENST00000222329	NM_006494.2	515	gGg/gTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42791007	42791007	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	34	325	0	ENST00000575354.2:c.152C>G	p.Pro51Arg	p.P51R	ENST00000575354	NM_015125.3	51	cCc/cGc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902262	50902262	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	150	546	0	ENST00000440232.2:c.154G>T	p.Glu52Ter	p.E52*	ENST00000440232	NM_002691.3	52	Gag/Tag																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444426	50444426	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	81	290	0	ENST00000331340.3:c.356G>T	p.Cys119Phe	p.C119F	ENST00000331340	NM_006060.4	119	tGt/tTt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391128	139391129	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	109	438	0	ENST00000277541.6:c.7062dup	p.Ala2355CysfsTer152	p.A2355Cfs*152	ENST00000277541	NM_017617.3	2354	-/T																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0044396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	105	553	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4102447	4102447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	88	654	0	ENST00000262948.5:c.455G>A	p.Gly152Asp	p.G152D	ENST00000262948	NM_030662.3	152	gGc/gAc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644774	67644789	+	frameshift_variant	Frame_Shift_Del	DEL	CGAAACTTTTATTAAA	CGAAACTTTTATTAAA	-			P-0044404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	249	438	0	ENST00000264010.4:c.39_54del	p.Thr15ArgfsTer42	p.T15Rfs*42	ENST00000264010	NM_006565.3	13	tcCGAAACTTTTATTAAA/tc																																																																															
RARA	5914	MSKCC	GRCh37	17	38504691	38504691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	347	599	0	ENST00000254066.5:c.302G>T	p.Gly101Val	p.G101V	ENST00000254066	NM_000964.3	101	gGg/gTg																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27777994	27777994	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	27	403	0	ENST00000369163.2:c.143C>A	p.Ala48Asp	p.A48D	ENST00000369163	NM_003536.2	48	gCt/gAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0044436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	101	479	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577113	7577113	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0044436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	160	695	0	ENST00000269305.4:c.825T>A	p.Cys275Ter	p.C275*	ENST00000269305	NM_001126112.2	275	tgT/tgA																																																																															
FH	2271	MSKCC	GRCh37	1	241680561	241680561	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	152	410	0	ENST00000366560.3:c.188C>G	p.Pro63Arg	p.P63R	ENST00000366560	NM_000143.3	63	cCa/cGa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864132	57864132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	169	547	0	ENST00000228682.2:c.1609G>T	p.Val537Phe	p.V537F	ENST00000228682	NM_005269.2	537	Gtc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0044461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	276	625	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
NUP93	9688	MSKCC	GRCh37	16	56866264	56866264	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1374778377		P-0044461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	56	290	0	ENST00000308159.5:c.1309C>G	p.Leu437Val	p.L437V	ENST00000308159	NM_014669.4	437	Ctc/Gtc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692895	89692895	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	102	339	0	ENST00000371953.3:c.379G>T	p.Gly127Ter	p.G127*	ENST00000371953	NM_000314.4	127	Gga/Tga																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38981989	38981989	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	66	336	0	ENST00000357387.3:c.733C>T	p.Arg245Ter	p.R245*	ENST00000357387	NM_152756.3	245	Cga/Tga																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176015438	176015438	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	122	317	0	ENST00000367669.3:c.1300G>T	p.Asp434Tyr	p.D434Y	ENST00000367669	NM_022457.5	434	Gac/Tac																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570231	95570231	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	100	257	0	ENST00000343455.3:c.3502G>T	p.Val1168Phe	p.V1168F	ENST00000343455	NM_177438.2	1168	Gtt/Ttt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99169299	99169299	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1281122001		P-0044461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	103	516	0	ENST00000074304.5:c.1229G>C	p.Arg410Thr	p.R410T	ENST00000074304	NM_001134224.1	410	aGa/aCa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133781	55133781	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	95	460	0	ENST00000257290.5:c.994G>T	p.Val332Phe	p.V332F	ENST00000257290	NM_006206.4	332	Gtc/Ttc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143181670	143181670	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	93	419	0	ENST00000262992.4:c.663del	p.Asp222IlefsTer6	p.D222Ifs*6	ENST00000262992	NM_001101669.1	221	aaA/aa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532907	187532907	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0044461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	60	284	0	ENST00000441802.2:c.9486C>G	p.Tyr3162Ter	p.Y3162*	ENST00000441802	NM_005245.3	3162	taC/taG																																																																															
RAD50	10111	MSKCC	GRCh37	5	131893126	131893126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	54	289	0	ENST00000265335.6:c.110C>T	p.Pro37Leu	p.P37L	ENST00000265335		37	cCc/cTc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662696	117662696	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	87	325	0	ENST00000368508.3:c.4769C>A	p.Ser1590Ter	p.S1590*	ENST00000368508	NM_002944.2	1590	tCa/tAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	95	277	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	79	333	2	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	81	322	2	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	352	595	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244943	46244943	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	118	460	0	ENST00000334344.6:c.3037C>T	p.Gln1013Ter	p.Q1013*	ENST00000334344	NM_152641.2	1013	Caa/Taa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10248611	10248611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	208	541	0	ENST00000340748.4:c.4142C>T	p.Ala1381Val	p.A1381V	ENST00000340748		1381	gCc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517201		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	29	409	1	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048756	180048756	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	60	585	0	ENST00000261937.6:c.1806del	p.His602GlnfsTer37	p.H602Qfs*37	ENST00000261937	NM_182925.4	602	caC/ca																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154242	2154242	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1388678905		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	83	618	2	ENST00000434045.2:c.686del	p.Pro229GlnfsTer27	p.P229Qfs*27	ENST00000434045	NM_001127598.1	229	cCa/ca																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	237	607	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993903	72993903	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751544438		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	169	494	0	ENST00000268489.5:c.142G>A	p.Gly48Arg	p.G48R	ENST00000268489	NM_006885.3	48	Ggg/Agg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46256699	46256699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749607074		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	96	398	0	ENST00000371998.3:c.755G>A	p.Arg252His	p.R252H	ENST00000371998		252	cGc/cAc																																																																															
ABL1	25	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	221	684	0	ENST00000318560.5:c.2352del	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216380	7216380	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	196	565	0	ENST00000380728.2:c.868del	p.Gln290SerfsTer55	p.Q290Sfs*55	ENST00000380728		290	Cag/ag																																																																															
NBN	4683	MSKCC	GRCh37	8	90967511	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	87	259	0	ENST00000265433.3:c.1396dup	p.Arg466LysfsTer5	p.R466Kfs*5	ENST00000265433	NM_002485.4	466	agg/aAgg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17954642	17954643	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	245	673	0	ENST00000458235.1:c.251dup	p.Ser85GlufsTer46	p.S85Efs*46	ENST00000458235	NM_000215.3	84	ccg/ccCg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262460	16262465	+	inframe_deletion	In_Frame_Del	DEL	CCCCCA	CCCCCA	-	rs773711901		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	42	239	0	ENST00000375759.3:c.9735_9740del	p.Thr3246_Pro3247del	p.T3246_P3247del	ENST00000375759	NM_015001.2	3242	gCCCCCAcc/gcc																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518587	69518587	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs114327249		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	105	491	0	ENST00000294312.3:c.58G>A	p.Val20Met	p.V20M	ENST00000294312	NM_005117.2	20	Gtg/Atg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339110	65339111	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	131	339	4	ENST00000342505.4:c.425dup	p.Ile143AspfsTer9	p.I143Dfs*9	ENST00000342505	NM_002227.2	142	aag/aaAg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230604	46230604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	144	383	0	ENST00000334344.6:c.853C>T	p.Arg285Trp	p.R285W	ENST00000334344	NM_152641.2	285	Cgg/Tgg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701932	43701933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	62	147	0	ENST00000382044.4:c.5312dup	p.Leu1771PhefsTer24	p.L1771Ffs*24	ENST00000382044	NM_001141980.1	1771	ttg/ttTg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190682809	190682810	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1275949235		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	16	245	0	ENST00000441310.2:c.492dup	p.Cys165MetfsTer2	p.C165Mfs*2	ENST00000441310	NM_000534.4	162	gca/gcAa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65312344	65312344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	176	454	0	ENST00000342505.4:c.1975C>T	p.Arg659Cys	p.R659C	ENST00000342505	NM_002227.2	659	Cgc/Tgc																																																																															
ATRX	546	MSKCC	GRCh37	X	76875919	76875919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	78	316	0	ENST00000373344.5:c.5216G>A	p.Arg1739Gln	p.R1739Q	ENST00000373344	NM_000489.3	1739	cGa/cAa																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981613	101981614	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	58	151	0	ENST00000282441.5:c.40dup	p.Gln14ProfsTer98	p.Q14Pfs*98	ENST00000282441	NM_001130145.2	12	gcc/gCcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213515	36213515	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746928288		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	250	754	1	ENST00000222270.7:c.2617C>T	p.Arg873Cys	p.R873C	ENST00000222270	NM_014727.1	873	Cgt/Tgt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739002	145739002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769675968		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	104	541	2	ENST00000428558.2:c.2153C>T	p.Ala718Val	p.A718V	ENST00000428558	NM_004260.3	718	gCg/gTg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988376	36988376	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751469975		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	79	314	1	ENST00000354822.5:c.277G>A	p.Ala93Thr	p.A93T	ENST00000354822	NM_001079668.2	93	Gcc/Acc																																																																															
CD79A	973	MSKCC	GRCh37	19	42384740	42384740	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	47	354	0	ENST00000221972.3:c.502C>T	p.Arg168Ter	p.R168*	ENST00000221972	NM_021601.3	168	Cga/Tga																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470994	25470994	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	247	617	0	ENST00000264709.3:c.767C>A	p.Pro256His	p.P256H	ENST00000264709	NM_175629.2	256	cCc/cAc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497244	149497245	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	210	579	0	ENST00000261799.4:c.3073dup	p.Leu1025ProfsTer3	p.L1025Pfs*3	ENST00000261799	NM_002609.3	1025	ctg/cCtg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39745033	39745033	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	138	395	1	ENST00000361337.2:c.1822+1G>A		p.X608_splice	ENST00000361337	NM_003286.2	608																																																																																
SPEN	23013	MSKCC	GRCh37	1	16255866	16255866	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	77	342	1	ENST00000375759.3:c.3131T>A	p.Ile1044Asn	p.I1044N	ENST00000375759	NM_015001.2	1044	aTt/aAt																																																																															
JUN	3725	MSKCC	GRCh37	1	59248202	59248203	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	17	79	0	ENST00000371222.2:c.540_541del	p.Leu181GlufsTer128	p.L181Efs*128	ENST00000371222	NM_002228.3	180	gcGCtg/gctg																																																																															
TET1	80312	MSKCC	GRCh37	10	70450886	70450886	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	147	450	0	ENST00000373644.4:c.5726C>A	p.Pro1909His	p.P1909H	ENST00000373644	NM_030625.2	1909	cCt/cAt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741373	17741373	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	145	611	0	ENST00000250003.3:c.48del	p.Asp17ThrfsTer34	p.D17Tfs*34	ENST00000250003	NM_002478.4	15	gCc/gc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939801	71939801	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781357595		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	84	643	0	ENST00000298229.2:c.428C>T	p.Pro143Leu	p.P143L	ENST00000298229	NM_001567.3	143	cCg/cTg																																																																															
ATM	472	MSKCC	GRCh37	11	108236131	108236131	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs879253964		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	152	479	0	ENST00000278616.4:c.9067G>A	p.Gly3023Ser	p.G3023S	ENST00000278616	NM_000051.3	3023	Ggc/Agc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244091	46244091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	57	399	0	ENST00000334344.6:c.2185C>T	p.Pro729Ser	p.P729S	ENST00000334344	NM_152641.2	729	Cct/Tct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428255	49428255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	213	600	0	ENST00000301067.7:c.10445G>T	p.Arg3482Leu	p.R3482L	ENST00000301067	NM_003482.3	3482	cGg/cTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68847249	68847249	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs556110297		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	200	446	0	ENST00000261769.5:c.1171G>A	p.Val391Ile	p.V391I	ENST00000261769	NM_004360.3	391	Gtc/Atc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7976199	7976199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	128	508	0	ENST00000319144.4:c.1996C>T	p.Arg666Cys	p.R666C	ENST00000319144	NM_001139.2	666	Cgc/Tgc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40468893	40468893	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	82	297	0	ENST00000264657.5:c.2171T>C	p.Leu724Pro	p.L724P	ENST00000264657	NM_139276.2	724	cTg/cCg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56363640	56363640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	38	292	2	ENST00000348428.3:c.419C>T	p.Ala140Val	p.A140V	ENST00000348428	NM_006785.3	140	gCt/gTt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1623996	1623996	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748050498		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	211	599	1	ENST00000344749.5:c.503C>T	p.Thr168Met	p.T168M	ENST00000344749	NM_001136139.2	168	aCg/aTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245817	5245817	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs774918692		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	107	652	0	ENST00000357368.4:c.958A>G	p.Ile320Val	p.I320V	ENST00000357368	NM_002850.3	320	Att/Gtt																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45873482	45873482	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	152	474	0	ENST00000391945.4:c.14T>C	p.Val5Ala	p.V5A	ENST00000391945	NM_000400.3	5	gTg/gCg																																																																															
MITF	4286	MSKCC	GRCh37	3	70014316	70014316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	151	494	1	ENST00000352241.4:c.1480C>T	p.Leu494Phe	p.L494F	ENST00000352241	NM_198159.2	494	Ctt/Ttt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1955189	1955190	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	165	473	0	ENST00000382895.3:c.2281dup	p.Leu761ProfsTer21	p.L761Pfs*21	ENST00000382895	NM_133330.2	759	tgc/tgCc																																																																															
KIT	3815	MSKCC	GRCh37	4	55564606	55564607	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	192	478	0	ENST00000288135.5:c.498dup	p.Lys167GlnfsTer58	p.K167Qfs*58	ENST00000288135	NM_000222.2	165	gac/gaCc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532743	187532743	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	80	451	0	ENST00000441802.2:c.9650T>C	p.Ile3217Thr	p.I3217T	ENST00000441802	NM_005245.3	3217	aTt/aCt																																																																															
SDHA	6389	MSKCC	GRCh37	5	228354	228354	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	29	275	0	ENST00000264932.6:c.676A>G	p.Met226Val	p.M226V	ENST00000264932	NM_004168.2	226	Atg/Gtg																																																																															
TERT	7015	MSKCC	GRCh37	5	1294981	1294981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	32	76	0	ENST00000310581.5:c.124G>A	p.Gly42Arg	p.G42R	ENST00000310581	NM_198253.2	42	Ggg/Agg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69030820	69030820	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	74	326	0	ENST00000288368.4:c.3362T>C	p.Phe1121Ser	p.F1121S	ENST00000288368	NM_024870.2	1121	tTc/tCc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485945	8485945	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	128	359	1	ENST00000356435.5:c.2872T>C	p.Tyr958His	p.Y958H	ENST00000356435		958	Tat/Cat																																																																															
AR	367	MSKCC	GRCh37	X	66931372	66931372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	182	560	1	ENST00000374690.3:c.2014C>T	p.Pro672Ser	p.P672S	ENST00000374690	NM_000044.3	672	Ccc/Tcc																																																																															
MED12	9968	MSKCC	GRCh37	X	70349939	70349940	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	241	636	0	ENST00000374080.3:c.3924dup	p.Asp1309ArgfsTer6	p.D1309Rfs*6	ENST00000374080		1308	caa/cAaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262139	16262139	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	85	242	0	ENST00000375759.3:c.9404A>C	p.Gln3135Pro	p.Q3135P	ENST00000375759	NM_015001.2	3135	cAg/cCg																																																																															
STK40	83931	MSKCC	GRCh37	1	36826926	36826926	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769201571		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	148	433	0	ENST00000373129.3:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000373129	NM_032017.1	3	cGg/cAg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115282439	115282439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	172	366	0	ENST00000438362.2:c.211C>T	p.Arg71Cys	p.R71C	ENST00000438362	NM_001242891.1	71	Cgt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782292		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	166	368	0	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432067	121432067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	80	537	0	ENST00000257555.6:c.814C>T	p.Arg272Cys	p.R272C	ENST00000257555		272	Cgc/Tgc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121435391	121435391	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193922580		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	211	520	0	ENST00000257555.6:c.1424C>T	p.Pro475Leu	p.P475L	ENST00000257555		475	cCg/cTg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061125	38061196	+	inframe_deletion	In_Frame_Del	DEL	CTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCG	CTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCG	-			P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	198	106	0	ENST00000250448.2:c.793_864del	p.Arg265_Lys288del	p.R265_K288del	ENST00000250448	NM_004496.3	265	CGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAG/-																																																																															
MGA	23269	MSKCC	GRCh37	15	41991060	41991060	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	95	237	0	ENST00000219905.7:c.2014-1G>T		p.X672_splice	ENST00000219905	NM_001164273.1	672																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	134	525	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
GNA11	2767	MSKCC	GRCh37	19	3115040	3115040	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	209	527	0	ENST00000078429.4:c.575A>G	p.Tyr192Cys	p.Y192C	ENST00000078429	NM_002067.2	192	tAc/tGc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229680	5229680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	10	15	0	ENST00000357368.4:c.2171C>A	p.Pro724Gln	p.P724Q	ENST00000357368	NM_002850.3	724	cCg/cAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5239041	5239041	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374725933		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	53	474	1	ENST00000357368.4:c.1738G>A	p.Val580Met	p.V580M	ENST00000357368	NM_002850.3	580	Gtg/Atg																																																																															
INSR	3643	MSKCC	GRCh37	19	7117189	7117189	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757085718		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	198	519	1	ENST00000302850.5:c.4027C>T	p.Arg1343Trp	p.R1343W	ENST00000302850	NM_000208.2	1343	Cgg/Tgg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354247	15354247	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	154	550	0	ENST00000263377.2:c.2633C>A	p.Ala878Asp	p.A878D	ENST00000263377	NM_058243.2	878	gCt/gAt																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	119	602	2	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
ERF	2077	MSKCC	GRCh37	19	42753645	42753645	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	124	571	2	ENST00000222329.4:c.619C>T	p.Arg207Ter	p.R207*	ENST00000222329	NM_006494.2	207	Cga/Tga																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128015227	128015227	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771245959		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	156	362	1	ENST00000285398.2:c.2294G>A	p.Arg765Gln	p.R765Q	ENST00000285398	NM_000122.1	765	cGg/cAg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1805543	1805543	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs886043604		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	142	477	0	ENST00000260795.2:c.1055C>T	p.Ala352Val	p.A352V	ENST00000260795		352	gCg/gTg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31429616	31429616	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	40	345	0	ENST00000344624.3:c.3182A>C	p.Lys1061Thr	p.K1061T	ENST00000344624		1061	aAg/aCg																																																																															
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	117	240	0	ENST00000257430.4:c.4393_4394dup	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180038401	180038401	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	182	532	0	ENST00000261937.6:c.3616G>C	p.Ala1206Pro	p.A1206P	ENST00000261937	NM_182925.4	1206	Gcc/Ccc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043465	180043465	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1451816005		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	185	495	0	ENST00000261937.6:c.3121C>T	p.Arg1041Trp	p.R1041W	ENST00000261937	NM_182925.4	1041	Cgg/Tgg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	151	549	3	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128347843	128347843	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758476607		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	160	395	1	ENST00000265960.3:c.662C>T	p.Pro221Leu	p.P221L	ENST00000265960	NM_001006617.1	221	cCg/cTg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300039	137300040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755912201		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	177	484	1	ENST00000481739.1:c.331dup	p.Leu111ProfsTer70	p.L111Pfs*70	ENST00000481739	NM_002957.4	108	-/C																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279834	46279836	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-	rs767107142		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	54	320	0	ENST00000371998.3:c.3762_3764del	p.Gln1276del	p.Q1276del	ENST00000371998		1254	CAA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0044582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	148	696	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0044582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	99	493	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175604	112175604	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	85	385	0	ENST00000257430.4:c.4313del	p.Thr1438AsnfsTer35	p.T1438Nfs*35	ENST00000257430	NM_000038.5	1438	aCa/aa																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96920601	96920601	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746883021		P-0044582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	46	472	0	ENST00000258439.3:c.379C>T	p.Arg127Cys	p.R127C	ENST00000258439	NM_001193304.2	127	Cgt/Tgt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285704	87285704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	70	629	0	ENST00000277120.3:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000277120		14	cGg/cAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396808	139396808	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	83	783	0	ENST00000277541.6:c.5300T>C	p.Leu1767Pro	p.L1767P	ENST00000277541	NM_017617.3	1767	cTc/cCc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577526	64577526	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	286	640	0	ENST00000337652.1:c.56del	p.Val19GlyfsTer100	p.V19Gfs*100	ENST00000337652	NM_130803.2	19	gTg/gg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161243	56161243	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	191	316	0	ENST00000399503.3:c.1112C>G	p.Ser371Ter	p.S371*	ENST00000399503	NM_005921.1	371	tCa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913527		P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	149	320	0	ENST00000256078.4:c.436G>C	p.Ala146Pro	p.A146P	ENST00000256078	NM_033360.2	146	Gca/Cca																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098973	178098973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	224	203	0	ENST00000397062.3:c.72G>C	p.Trp24Cys	p.W24C	ENST00000397062	NM_006164.4	24	tgG/tgC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	187	467	0	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114917829	114917829	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	58	414	0	ENST00000543371.1:c.1318+1G>A		p.X440_splice	ENST00000543371	NM_001198531.1	440																																																																																
FGFR2	2263	MSKCC	GRCh37	10	123279675	123279675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	43	293	0	ENST00000358487.5:c.757C>T	p.Pro253Ser	p.P253S	ENST00000358487	NM_000141.4	253	Cct/Tct																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864774	57864774	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	208	592	0	ENST00000228682.2:c.2251C>G	p.Leu751Val	p.L751V	ENST00000228682	NM_005269.2	751	Ctg/Gtg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106747	27106747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	281	513	0	ENST00000324856.7:c.6358G>A	p.Glu2120Lys	p.E2120K	ENST00000324856	NM_006015.4	2120	Gaa/Aaa																																																																															
RET	5979	MSKCC	GRCh37	10	43595962	43595962	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1488040686		P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	224	625	1	ENST00000355710.3:c.129C>A	p.Asp43Glu	p.D43E	ENST00000355710	NM_020975.4	43	gaC/gaA																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103528113	103528113	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	34	319	0	ENST00000355739.4:c.3421G>T	p.Gly1141Ter	p.G1141*	ENST00000355739	NM_000123.3	1141	Gga/Tga																																																																															
IDH2	3418	MSKCC	GRCh37	15	90634809	90634814	+	frameshift_variant	Frame_Shift_Del	DEL	AATACG	AATACG	GAGAT			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	155	536	2	ENST00000330062.3:c.178_183delinsATCTC	p.Arg60IlefsTer20	p.R60Ifs*20	ENST00000330062	NM_002168.2	60	CGTATT/ATCTC																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59820399	59820399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	152	335	0	ENST00000259008.2:c.2354C>A	p.Pro785His	p.P785H	ENST00000259008	NM_032043.2	785	cCt/cAt																																																																															
STK11	6794	MSKCC	GRCh37	19	1226492	1226492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	223	539	0	ENST00000326873.7:c.1148G>C	p.Arg383Pro	p.R383P	ENST00000326873	NM_000455.4	383	cGc/cCc																																																																															
ALK	238	MSKCC	GRCh37	2	30143467	30143467	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	91	316	0	ENST00000389048.3:c.59G>T	p.Gly20Val	p.G20V	ENST00000389048	NM_004304.4	20	gGc/gTc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1920059	1920059	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	198	532	1	ENST00000382895.3:c.1119G>T	p.Met373Ile	p.M373I	ENST00000382895	NM_133330.2	373	atG/atT																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31508817	31508817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	63	525	1	ENST00000344624.3:c.1498G>A	p.Glu500Lys	p.E500K	ENST00000344624		500	Gaa/Aaa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876533	35876533	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	239	423	0	ENST00000303115.3:c.1325G>T	p.Gly442Val	p.G442V	ENST00000303115	NM_002185.3	442	gGa/gTa																																																																															
MED12	9968	MSKCC	GRCh37	X	70349220	70349220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	108	546	0	ENST00000374080.3:c.3632C>A	p.Ser1211Tyr	p.S1211Y	ENST00000374080		1211	tCc/tAc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123184117	123184117	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	55	257	0	ENST00000218089.9:c.975T>G	p.Asn325Lys	p.N325K	ENST00000218089	NM_001042749.1	325	aaT/aaG																																																																															
STAG2	10735	MSKCC	GRCh37	X	123190001	123190001	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	111	370	0	ENST00000218089.9:c.1220C>G	p.Ala407Gly	p.A407G	ENST00000218089	NM_001042749.1	407	gCa/gGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	34	405	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578399	7578403	+	protein_altering_variant	In_Frame_Del	DEL	GGGGC	GGGGC	AG			P-0044639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	86	671	2	ENST00000269305.4:c.527_531delinsCT	p.Cys176_Pro177delinsSer	p.C176_P177delinsS	ENST00000269305	NM_001126112.2	176	tGCCCC/tCT																																																																															
RB1	5925	MSKCC	GRCh37	13	48955538	48955538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913303		P-0044660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	162	334	0	ENST00000267163.4:c.1654C>T	p.Arg552Ter	p.R552*	ENST00000267163	NM_000321.2	552	Cga/Tga																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871036	12871036	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	297	447	0	ENST00000228872.4:c.263A>G	p.Tyr88Cys	p.Y88C	ENST00000228872	NM_004064.3	88	tAc/tGc																																																																															
NF1	4763	MSKCC	GRCh37	17	29585361	29585361	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0044660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	316	444	0	ENST00000358273.4:c.4174-1G>A		p.X1392_splice	ENST00000358273	NM_001042492.2	1392																																																																																
FGFR2	2263	MSKCC	GRCh37	10	123247516	123247516	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519795		P-0044660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	321	437	1	ENST00000358487.5:c.1975A>G	p.Lys659Glu	p.K659E	ENST00000358487	NM_000141.4	659	Aag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0044660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	575	795	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10600470	10600470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	584	731	0	ENST00000171111.5:c.1385G>T	p.Gly462Val	p.G462V	ENST00000171111	NM_203500.1	462	gGg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579496	7579496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	560	827	0	ENST00000269305.4:c.191C>T	p.Pro64Leu	p.P64L	ENST00000269305	NM_001126112.2	64	cCc/cTc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47643492	47643492	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	325	568	0	ENST00000233146.2:c.1000A>G	p.Lys334Glu	p.K334E	ENST00000233146	NM_000251.2	334	Aaa/Gaa																																																																															
APC	324	MSKCC	GRCh37	5	112174980	112174980	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	265	201	0	ENST00000257430.4:c.3689A>T	p.Gln1230Leu	p.Q1230L	ENST00000257430	NM_000038.5	1230	cAg/cTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69032475	69032477	+	missense_variant	Missense_Mutation	ONP	GGC	GGC	AAA			P-0044660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	195	700	3	ENST00000288368.4:c.3549_3551delinsAAA	p.Ala1184Asn	p.A1184N	ENST00000288368	NM_024870.2	1183	agGGCc/agAAAc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285740	87285740	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	457	655	0	ENST00000277120.3:c.77G>T	p.Trp26Leu	p.W26L	ENST00000277120		26	tGg/tTg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249644	110249644	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764221089		P-0044660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	724	1108	0	ENST00000374672.4:c.1031C>T	p.Pro344Leu	p.P344L	ENST00000374672	NM_004235.4	344	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0044799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	492	627	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
RET	5979	MSKCC	GRCh37	10	43598009	43598009	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	220	735	0	ENST00000355710.3:c.557A>G	p.His186Arg	p.H186R	ENST00000355710	NM_020975.4	186	cAc/cGc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99172091	99172091	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776893699		P-0044799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	89	548	2	ENST00000074304.5:c.1657C>T	p.Arg553Trp	p.R553W	ENST00000074304	NM_001134224.1	553	Cgg/Tgg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69058531	69058531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	117	506	0	ENST00000288368.4:c.4175C>T	p.Pro1392Leu	p.P1392L	ENST00000288368	NM_024870.2	1392	cCt/cTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0044848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2233	496	820	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0044848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	840	582	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
PAX5	5079	MSKCC	GRCh37	9	36840607	36840607	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs528158465		P-0044848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	175	855	0	ENST00000358127.4:c.1126G>A	p.Ala376Thr	p.A376T	ENST00000358127	NM_001280556.1	376	Gcc/Acc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435828	56435828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs995358248		P-0044848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	149	838	0	ENST00000407977.2:c.1309C>T	p.Arg437Trp	p.R437W	ENST00000407977		437	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0044848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	821	899	0	ENST00000269305.4:c.376-1G>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
NF1	4763	MSKCC	GRCh37	17	29585383	29585383	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131691072		P-0044848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	268	582	0	ENST00000358273.4:c.4195C>T	p.Gln1399Ter	p.Q1399*	ENST00000358273	NM_001042492.2	1399	Cag/Tag																																																																															
AXL	558	MSKCC	GRCh37	19	41763501	41763501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200271277		P-0044848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	142	690	1	ENST00000301178.4:c.2300G>A	p.Arg767His	p.R767H	ENST00000301178	NM_021913.4	767	cGc/cAc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30105530	30105530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1435	136	717	0	ENST00000331968.5:c.1156G>T	p.Asp386Tyr	p.D386Y	ENST00000331968	NM_002742.2	386	Gac/Tac																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62319956	62319956	+	missense_variant,splice_region_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs199796539		P-0044848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	168	945	2	ENST00000482936.1:c.1798G>A	p.Glu600Lys	p.E600K	ENST00000482936		600	Gag/Aag																																																																															
MSH3	4437	MSKCC	GRCh37	5	80057447	80057447	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	71	390	0	ENST00000265081.6:c.1846C>G	p.Arg616Gly	p.R616G	ENST00000265081	NM_002439.4	616	Cgt/Ggt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206646622	206646622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	205	777	0	ENST00000367120.3:c.52G>A	p.Gly18Arg	p.G18R	ENST00000367120	NM_014002.3	18	Ggg/Agg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0044964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	110	356	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28598996	28598996	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0044964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	119	383	0	ENST00000241453.7:c.2290+2T>C		p.X764_splice	ENST00000241453	NM_004119.2	764																																																																																
NF1	4763	MSKCC	GRCh37	17	29554618	29554619	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	132	280	0	ENST00000358273.4:c.2405dup	p.Gln803ProfsTer4	p.Q803Pfs*4	ENST00000358273	NM_001042492.2	801	-/G																																																																															
STK11	6794	MSKCC	GRCh37	19	1207201	1207201	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0044964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	357	588	0	ENST00000326873.7:c.289A>T	p.Lys97Ter	p.K97*	ENST00000326873	NM_000455.4	97	Aag/Tag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214631	5214631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	218	696	0	ENST00000357368.4:c.4435G>T	p.Val1479Leu	p.V1479L	ENST00000357368	NM_002850.3	1479	Gtg/Ttg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098933	178098933	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	83	306	0	ENST00000397062.3:c.112G>C	p.Asp38His	p.D38H	ENST00000397062	NM_006164.4	38	Gac/Cac																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656839	45656839	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	526	527	0	ENST00000407780.3:c.317A>T	p.Gln106Leu	p.Q106L	ENST00000407780	NM_001283052.1	106	cAg/cTg																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	82	298	0	ENST00000244661.2:c.316G>A	p.Glu106Lys	p.E106K	ENST00000244661	NM_003537.3	106	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	213	280	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540652		P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	244	516	1	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508361	106508361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	115	254	0	ENST00000359195.3:c.355C>A	p.Leu119Met	p.L119M	ENST00000359195	NM_002649.2	119	Ctg/Atg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3652269	3652269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752160984		P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	143	556	1	ENST00000294008.3:c.800C>T	p.Ala267Val	p.A267V	ENST00000294008	NM_032444.2	267	gCg/gTg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683677	162683677	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	335	425	0	ENST00000366898.1:c.292G>T	p.Glu98Ter	p.E98*	ENST00000366898	NM_004562.2	98	Gag/Tag																																																																															
JUN	3725	MSKCC	GRCh37	1	59248123	59248124	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs748534142		P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	15	147	0	ENST00000371222.2:c.617_619dup	p.Gln206dup	p.Q206dup	ENST00000371222	NM_002228.3	206	ccg/cAGCcg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633102	3633102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	91	505	0	ENST00000294008.3:c.5149C>T	p.Gln1717Ter	p.Q1717*	ENST00000294008	NM_032444.2	1717	Cag/Tag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464499	25464499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	257	605	1	ENST00000264709.3:c.2014G>T	p.Val672Leu	p.V672L	ENST00000264709	NM_175629.2	672	Gtg/Ttg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713362	40713362	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	246	639	0	ENST00000373198.4:c.4153del	p.Gln1385SerfsTer14	p.Q1385Sfs*14	ENST00000373198	NM_133170.3	1385	Cag/ag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046716	180046716	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs910059826		P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	318	721	0	ENST00000261937.6:c.2596G>A	p.Gly866Ser	p.G866S	ENST00000261937	NM_182925.4	866	Ggc/Agc																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271474	26271474	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	144	393	0	ENST00000305910.3:c.139G>T	p.Val47Leu	p.V47L	ENST00000305910	NM_003534.2	47	Gtg/Ttg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987279	2987279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	202	439	1	ENST00000396946.4:c.150G>T	p.Lys50Asn	p.K50N	ENST00000396946	NM_032415.4	50	aaG/aaT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106524645	106524645	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	96	223	0	ENST00000359195.3:c.2806T>A	p.Cys936Ser	p.C936S	ENST00000359195	NM_002649.2	936	Tgt/Agt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410525	63410525	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	50	643	0	ENST00000330258.3:c.2642G>C	p.Arg881Pro	p.R881P	ENST00000330258	NM_152424.3	881	cGa/cCa																																																																															
ALK	238	MSKCC	GRCh37	2	29455266	29455266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	170	419	0	ENST00000389048.3:c.2536G>T	p.Gly846Cys	p.G846C	ENST00000389048	NM_004304.4	846	Ggc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5239032	5239036	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCC	CCTCC	TTT			P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	310	690	0	ENST00000357368.4:c.1743_1747delinsAAA	p.Glu582LysfsTer44	p.E582Kfs*44	ENST00000357368	NM_002850.3	581	gtGGAGGac/gtAAAac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909231		P-0045005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	111	317	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472466	88472466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	167	735	1	ENST00000360948.2:c.2089G>T	p.Asp697Tyr	p.D697Y	ENST00000360948	NM_001012338.2	697	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577041	7577041	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	309	997	0	ENST00000269305.4:c.897del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	299	ctG/ct																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375094	31375094	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	263	949	0	ENST00000328111.2:c.491C>G	p.Ser164Cys	p.S164C	ENST00000328111	NM_006892.3	164	tCt/tGt																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750581	41750581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	95	745	0	ENST00000226382.2:c.47C>T	p.Ser16Phe	p.S16F	ENST00000226382	NM_003924.3	16	tCc/tTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878944	151878944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	169	653	1	ENST00000262189.6:c.6001G>T	p.Ala2001Ser	p.A2001S	ENST00000262189	NM_170606.2	2001	Gct/Tct																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0045005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	196	641	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211383	98211383	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148350525		P-0045005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	234	904	0	ENST00000331920.6:c.3772G>A	p.Ala1258Thr	p.A1258T	ENST00000331920	NM_000264.3	1258	Gcc/Acc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28931588		P-0047360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	89	278	0	ENST00000349496.5:c.94G>C	p.Asp32His	p.D32H	ENST00000349496	NM_001904.3	32	Gac/Cac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0047360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	46	271	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																															
EED	8726	MSKCC	GRCh37	11	85956318	85956318	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371991859		P-0047360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	56	193	0	ENST00000263360.6:c.47C>T	p.Pro16Leu	p.P16L	ENST00000263360	NM_003797.3	16	cCt/cTt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646429	23646429	+	stop_gained	Nonsense_Mutation	SNP	T	T	A	rs1057520653		P-0047360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	132	425	0	ENST00000261584.4:c.1438A>T	p.Lys480Ter	p.K480*	ENST00000261584	NM_024675.3	480	Aaa/Taa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220590	1220590	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782379		P-0047360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	188	674	1	ENST00000326873.7:c.608C>T	p.Pro203Leu	p.P203L	ENST00000326873	NM_000455.4	203	cCg/cTg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786008	135786008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	166	515	1	ENST00000298552.3:c.1213G>A	p.Asp405Asn	p.D405N	ENST00000298552	NM_001162426.1	405	Gac/Aac																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	33	269	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	64	554	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372148	55372148	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	101	524	0	ENST00000297316.4:c.838G>T	p.Gly280Cys	p.G280C	ENST00000297316	NM_022454.3	280	Ggt/Tgt																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39311714	39311714	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	43	451	0	ENST00000373001.3:c.945G>T	p.Met315Ile	p.M315I	ENST00000373001	NM_022157.3	315	atG/atT																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948533	71948533	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	63	792	0	ENST00000298229.2:c.3245G>T	p.Gly1082Val	p.G1082V	ENST00000298229	NM_001567.3	1082	gGg/gTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351890	89351890	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	83	621	0	ENST00000301030.4:c.1060G>C	p.Glu354Gln	p.E354Q	ENST00000301030	NM_001256183.1	354	Gag/Cag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117680976	117680976	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	34	218	0	ENST00000368508.3:c.3644C>G	p.Ser1215Cys	p.S1215C	ENST00000368508	NM_002944.2	1215	tCt/tGt																																																																															
HGF	3082	MSKCC	GRCh37	7	81340797	81340797	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0048409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	16	149	0	ENST00000222390.5:c.1444C>A	p.His482Asn	p.H482N	ENST00000222390	NM_000601.4	482	Cat/Aat																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250522	110250522	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	45	520	0	ENST00000374672.4:c.153G>T	p.Met51Ile	p.M51I	ENST00000374672	NM_004235.4	51	atG/atT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0048693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	83	367	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0048693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	77	461	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
AXL	558	MSKCC	GRCh37	19	41758265	41758265	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	42	413	0	ENST00000301178.4:c.1721G>T	p.Cys574Phe	p.C574F	ENST00000301178	NM_021913.4	574	tGc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0050860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	69	431	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092809	27092809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	52	591	2	ENST00000324856.7:c.2830C>T	p.Gln944Ter	p.Q944*	ENST00000324856	NM_006015.4	944	Cag/Tag																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988512	36988512	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	87	701	0	ENST00000354822.5:c.141G>C	p.Leu47Phe	p.L47F	ENST00000354822	NM_001079668.2	47	ttG/ttC																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770101	56770101	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782528		P-0050860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	59	593	0	ENST00000337432.4:c.97C>T	p.Gln33Ter	p.Q33*	ENST00000337432	NM_058216.2	33	Cag/Tag																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73775238	73775238	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	74	552	0	ENST00000254810.4:c.18G>C	p.Gln6His	p.Q6H	ENST00000254810	NM_005324.3	6	caG/caC																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105543	11105543	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0050860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	87	618	1	ENST00000344626.4:c.1459A>T	p.Lys487Ter	p.K487*	ENST00000344626	NM_003072.3	487	Aag/Tag																																																																															
PMS1	5378	MSKCC	GRCh37	2	190682877	190682877	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	105	439	0	ENST00000441310.2:c.553G>T	p.Asp185Tyr	p.D185Y	ENST00000441310	NM_000534.4	185	Gac/Tac																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143159086	143159086	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	91	381	1	ENST00000262992.4:c.767C>A	p.Ser256Ter	p.S256*	ENST00000262992	NM_001101669.1	256	tCa/tAa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2972178	2972178	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	89	643	0	ENST00000396946.4:c.1561G>C	p.Asp521His	p.D521H	ENST00000396946	NM_032415.4	521	Gat/Cat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636773	8636773	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	66	482	0	ENST00000356435.5:c.136C>A	p.Gln46Lys	p.Q46K	ENST00000356435		46	Caa/Aaa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907106	101907106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	33	353	0	ENST00000374994.4:c.1066G>T	p.Val356Leu	p.V356L	ENST00000374994	NM_004612.2	356	Gta/Tta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0050938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	298	1057	6	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32930687	32930687	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs80358981		P-0050938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	127	455	1	ENST00000380152.3:c.7558C>T	p.Arg2520Ter	p.R2520*	ENST00000380152		2520	Cga/Tga																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249954	110249954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	246	774	1	ENST00000374672.4:c.721G>A	p.Glu241Lys	p.E241K	ENST00000374672	NM_004235.4	241	Gag/Aag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273994	10273994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	248	1047	2	ENST00000330684.3:c.275G>A	p.Gly92Glu	p.G92E	ENST00000330684	NM_001134407.1	92	gGg/gAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444081	49444081	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	223	853	1	ENST00000301067.7:c.3290del	p.Pro1097GlnfsTer22	p.P1097Qfs*22	ENST00000301067	NM_003482.3	1097	cCa/ca																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366396	15366396	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	89	442	0	ENST00000263377.2:c.1759G>C	p.Glu587Gln	p.E587Q	ENST00000263377	NM_058243.2	587	Gag/Cag																																																																															
CIC	23152	MSKCC	GRCh37	19	42796457	42796457	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs767634110		P-0050938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	96	1114	2	ENST00000575354.2:c.3014C>A	p.Thr1005Asn	p.T1005N	ENST00000575354	NM_015125.3	1005	aCc/aAc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430182	181430182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	48	207	1	ENST00000325404.1:c.34C>T	p.Pro12Ser	p.P12S	ENST00000325404	NM_003106.3	12	Ccg/Tcg																																																																															
TP63	8626	MSKCC	GRCh37	3	189586430	189586430	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	341	422	2	ENST00000264731.3:c.1054A>T	p.Arg352Trp	p.R352W	ENST00000264731	NM_003722.4	352	Agg/Tgg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683716	162683716	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1042122187		P-0050938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	67	684	0	ENST00000366898.1:c.253G>T	p.Gly85Cys	p.G85C	ENST00000366898	NM_004562.2	85	Ggc/Tgc																																																																															
LYN	4067	MSKCC	GRCh37	8	56863046	56863047	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	A			P-0050938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	50	518	0	ENST00000519728.1:c.313_314delinsA	p.Leu105IlefsTer2	p.L105Ifs*2	ENST00000519728	NM_002350.3	105	CTt/At																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	69	399	0	ENST00000263967.3:c.333G>T	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0053948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	240	477	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0053948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	305	763	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0053948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	310	963	3	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0053948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	197	558	1	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42794601	42794601	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	140	955	0	ENST00000575354.2:c.1681G>T	p.Glu561Ter	p.E561*	ENST00000575354	NM_015125.3	561	Gag/Tag																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910692	29910692	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs281864736		P-0053948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1416	168	1725	0	ENST00000376809.5:c.232C>T	p.Gln78Ter	p.Q78*	ENST00000376809	NM_002116.7	78	Cag/Tag																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041768	14041768	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1348674133		P-0053948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	231	514	0	ENST00000311895.7:c.2315G>A	p.Arg772Gln	p.R772Q	ENST00000311895	NM_005236.2	772	cGa/cAa																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149238663	149238663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	242	670	0	ENST00000360632.3:c.1132G>A	p.Asp378Asn	p.D378N	ENST00000360632	NM_015472.4	378	Gac/Aac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434544	49434544	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	327	974	0	ENST00000301067.7:c.7009C>T	p.Gln2337Ter	p.Q2337*	ENST00000301067	NM_003482.3	2337	Cag/Tag																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512344	149512344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368602685		P-0053948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	327	804	2	ENST00000261799.4:c.1096G>A	p.Ala366Thr	p.A366T	ENST00000261799	NM_002609.3	366	Gcc/Acc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589370	28589370	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	74	426	0	ENST00000241453.7:c.2677C>G	p.Pro893Ala	p.P893A	ENST00000241453	NM_004119.2	893	Ccg/Gcg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50785544	50785544	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	138	678	0	ENST00000398568.2:c.534C>G	p.Asp178Glu	p.D178E	ENST00000398568	NM_001042412.1	178	gaC/gaG																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81968086	81968111	+	frameshift_variant	Frame_Shift_Del	DEL	CTGACCTGGTTGTCTACTGCAAACCA	CTGACCTGGTTGTCTACTGCAAACCA	-			P-0053948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	71	553	0	ENST00000359376.3:c.2792_2817del	p.Ser931TyrfsTer12	p.S931Yfs*12	ENST00000359376	NM_002661.3	931	tCTGACCTGGTTGTCTACTGCAAACCA/t																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12044575	12044575	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0053948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	90	440	0	ENST00000353533.5:c.1198T>C	p.Ter400ArgextTer8	p.*400Rext*8	ENST00000353533	NM_003010.3	400	Tga/Cga																																																																															
INSR	3643	MSKCC	GRCh37	19	7170553	7170553	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	102	492	0	ENST00000302850.5:c.1478C>A	p.Ala493Glu	p.A493E	ENST00000302850	NM_000208.2	493	gCa/gAa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906367	50906367	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	314	1158	0	ENST00000440232.2:c.1028del	p.Arg343ProfsTer50	p.R343Pfs*50	ENST00000440232	NM_002691.3	343	cGc/cc																																																																															
ALK	238	MSKCC	GRCh37	2	29917776	29917776	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	266	845	0	ENST00000389048.3:c.892G>T	p.Ala298Ser	p.A298S	ENST00000389048	NM_004304.4	298	Gcc/Tcc																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182681832	182681832	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	78	398	0	ENST00000292782.4:c.226C>G	p.Gln76Glu	p.Q76E	ENST00000292782	NM_020640.2	76	Caa/Gaa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564695	86564704	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCCCCCTT	CTGCCCCCTT	-			P-0053948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	315	926	0	ENST00000274376.6:c.427_436del	p.Leu143TrpfsTer28	p.L143Wfs*28	ENST00000274376	NM_002890.2	143	CTGCCCCCTTtg/tg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449749	149449749	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774962435		P-0053948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	108	716	0	ENST00000286301.3:c.1315G>A	p.Asp439Asn	p.D439N	ENST00000286301	NM_005211.3	439	Gat/Aat																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911182	29911182	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	88	528	0	ENST00000376809.5:c.481G>T	p.Asp161Tyr	p.D161Y	ENST00000376809	NM_002116.7	161	Gac/Tac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836345	151836345	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0053948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	30	510	0	ENST00000262189.6:c.14461-1G>C		p.X4821_splice	ENST00000262189	NM_170606.2	4821																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139396773	139396773	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	297	840	0	ENST00000277541.6:c.5335A>T	p.Ser1779Cys	p.S1779C	ENST00000277541	NM_017617.3	1779	Agc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0059466-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			740	87	471	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0059466-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			876	97	529	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47035956	47035956	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0059466-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			793	75	456	0	ENST00000329236.7:c.403A>T	p.Lys135Ter	p.K135*	ENST00000329236	NM_001204466.1	135	Aag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0059527-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			599	38	442	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0061219-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			617	191	762	0	ENST00000269305.4:c.470T>G	p.Val157Gly	p.V157G	ENST00000269305	NM_001126112.2	157	gTc/gGc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87322806	87322806	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144037140		P-0061219-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			302	49	352	2	ENST00000277120.3:c.407G>A	p.Arg136His	p.R136H	ENST00000277120		136	cGt/cAt																																																																															
RB1	5925	MSKCC	GRCh37	13	48937094	48937094	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0061219-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			184	21	224	0	ENST00000267163.4:c.861+1G>A		p.X287_splice	ENST00000267163	NM_000321.2	287																																																																																
ROS1	6098	MSKCC	GRCh37	6	117663568	117663568	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061219-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			240	23	343	0	ENST00000368508.3:c.4664A>G	p.Asn1555Ser	p.N1555S	ENST00000368508	NM_002944.2	1555	aAt/aGt																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858034	152858034	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061219-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			290	92	373	2	ENST00000406277.2:c.581T>C	p.Leu194Pro	p.L194P	ENST00000406277	NM_152274.4	194	cTc/cCc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465274	120465274	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs752668646		P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			693	64	702	0	ENST00000256646.2:c.4987C>G	p.Leu1663Val	p.L1663V	ENST00000256646	NM_024408.3	1663	Ctt/Gtt																																																																															
FH	2271	MSKCC	GRCh37	1	241682947	241682947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			806	55	601	0	ENST00000366560.3:c.76C>T	p.Pro26Ser	p.P26S	ENST00000366560	NM_000143.3	26	Ccc/Tcc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610154	10610154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			787	84	724	0	ENST00000171111.5:c.556G>T	p.Gly186Cys	p.G186C	ENST00000171111	NM_203500.1	186	Ggc/Tgc																																																																															
ALK	238	MSKCC	GRCh37	2	29498290	29498290	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			717	62	663	0	ENST00000389048.3:c.1890C>G	p.Ile630Met	p.I630M	ENST00000389048	NM_004304.4	630	atC/atG																																																																															
STAG2	10735	MSKCC	GRCh37	X	123182858	123182858	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			205	42	158	0	ENST00000218089.9:c.823C>T	p.Gln275Ter	p.Q275*	ENST00000218089	NM_001042749.1	275	Cag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164342	47164342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			648	56	496	0	ENST00000409792.3:c.1784C>T	p.Ser595Leu	p.S595L	ENST00000409792	NM_014159.6	595	tCa/tTa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164591	47164591	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			685	66	584	0	ENST00000409792.3:c.1535C>G	p.Ser512Ter	p.S512*	ENST00000409792	NM_014159.6	512	tCa/tGa																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770065	56770065	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs752608224		P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			733	63	666	0	ENST00000337432.4:c.61C>G	p.Pro21Ala	p.P21A	ENST00000337432	NM_058216.2	21	Cca/Gca																																																																															
FANCA	2175	MSKCC	GRCh37	16	89825063	89825063	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779162871		P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			827	74	734	0	ENST00000389301.3:c.2903C>T	p.Ser968Leu	p.S968L	ENST00000389301	NM_000135.2	968	tCg/tTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			382	77	420	0	ENST00000329236.7:c.1459+1G>C		p.X487_splice	ENST00000329236	NM_001204466.1	487																																																																																
SDHD	6392	MSKCC	GRCh37	11	111959722	111959722	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			522	50	470	0	ENST00000375549.3:c.301C>G	p.Leu101Val	p.L101V	ENST00000375549	NM_003002.3	101	Ctt/Gtt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641473	18641473	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			647	74	611	0	ENST00000266497.5:c.2472G>C	p.Leu824Phe	p.L824F	ENST00000266497		824	ttG/ttC																																																																															
STK11	6794	MSKCC	GRCh37	19	1220706	1220706	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs878853992		P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			548	116	671	0	ENST00000326873.7:c.724G>T	p.Gly242Trp	p.G242W	ENST00000326873	NM_000455.4	242	Ggg/Tgg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518061	103518061	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			703	56	549	0	ENST00000355739.4:c.1999C>T	p.Gln667Ter	p.Q667*	ENST00000355739	NM_000123.3	667	Caa/Taa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729465	41729465	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747474916		P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			735	66	770	0	ENST00000242208.4:c.1064C>T	p.Pro355Leu	p.P355L	ENST00000242208	NM_002192.2	355	cCg/cTg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803122	32803122	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745356167		P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			652	205	621	0	ENST00000374899.4:c.754C>T	p.Arg252Trp	p.R252W	ENST00000374899	NM_018833.2	252	Cgg/Tgg																																																																															
PIM1	5292	MSKCC	GRCh37	6	37138627	37138627	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			842	62	785	0	ENST00000373509.5:c.161C>G	p.Ser54Ter	p.S54*	ENST00000373509	NM_002648.3	54	tCa/tGa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39234309	39234309	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397517159		P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			463	40	339	0	ENST00000402219.2:c.2536G>A	p.Glu846Lys	p.E846K	ENST00000402219	NM_005633.3	846	Gaa/Aaa																																																																															
KLF4	9314	MSKCC	GRCh37	9	110251297	110251297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			766	56	685	0	ENST00000374672.4:c.40G>T	p.Asp14Tyr	p.D14Y	ENST00000374672	NM_004235.4	14	Gac/Tac																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217842	7217842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			730	131	619	0	ENST00000380728.2:c.169G>A	p.Glu57Lys	p.E57K	ENST00000380728		57	Gaa/Aaa																																																																															
PIM1	5292	MSKCC	GRCh37	6	37138765	37138765	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			880	76	769	0	ENST00000373509.5:c.198C>G	p.Ile66Met	p.I66M	ENST00000373509	NM_002648.3	66	atC/atG																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920419	114920419	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs750925453		P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			643	53	520	0	ENST00000543371.1:c.1360G>C	p.Asp454His	p.D454H	ENST00000543371	NM_001198531.1	454	Gac/Cac																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935620	13935620	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			664	51	622	0	ENST00000405192.2:c.1236G>C	p.Lys412Asn	p.K412N	ENST00000405192	NM_001163147.1	412	aaG/aaC																																																																															
ATM	472	MSKCC	GRCh37	11	108121699	108121699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			773	68	585	0	ENST00000278616.4:c.1507G>A	p.Glu503Lys	p.E503K	ENST00000278616	NM_000051.3	503	Gaa/Aaa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36938135	36938135	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201037400		P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			577	69	677	0	ENST00000361632.4:c.826G>A	p.Glu276Lys	p.E276K	ENST00000361632		276	Gaa/Aaa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99152300	99152300	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1247867306		P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			558	46	461	0	ENST00000074304.5:c.379C>T	p.Gln127Ter	p.Q127*	ENST00000074304	NM_001134224.1	127	Cag/Tag																																																																															
GNB1	2782	MSKCC	GRCh37	1	1720601	1720601	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			711	85	665	0	ENST00000378609.4:c.807C>G	p.Ile269Met	p.I269M	ENST00000378609	NM_002074.3	269	atC/atG																																																																															
JAK1	3716	MSKCC	GRCh37	1	65332846	65332846	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			626	51	589	0	ENST00000342505.4:c.693G>C	p.Gln231His	p.Q231H	ENST00000342505	NM_002227.2	231	caG/caC																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699392	117699392	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			758	69	701	0	ENST00000369458.3:c.249C>G	p.Phe83Leu	p.F83L	ENST00000369458	NM_024626.3	83	ttC/ttG																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150933107	150933107	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			825	64	587	0	ENST00000271640.5:c.2569C>G	p.Leu857Val	p.L857V	ENST00000271640	NM_001145415.1	857	Ctg/Gtg																																																																															
PARP1	142	MSKCC	GRCh37	1	226576408	226576408	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			776	82	624	0	ENST00000366794.5:c.666G>C	p.Lys222Asn	p.K222N	ENST00000366794	NM_001618.3	222	aaG/aaC																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097784	8097784	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			902	62	728	0	ENST00000346208.3:c.166C>G	p.Gln56Glu	p.Q56E	ENST00000346208		56	Caa/Gaa																																																																															
GAB2	9846	MSKCC	GRCh37	11	77991906	77991906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			675	70	595	1	ENST00000361507.4:c.117G>A	p.Met39Ile	p.M39I	ENST00000361507	NM_080491.2	39	atG/atA																																																																															
ATM	472	MSKCC	GRCh37	11	108121744	108121744	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			735	66	605	0	ENST00000278616.4:c.1552G>T	p.Glu518Ter	p.E518*	ENST00000278616	NM_000051.3	518	Gag/Tag																																																																															
CBL	867	MSKCC	GRCh37	11	119168119	119168119	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			638	77	502	0	ENST00000264033.4:c.2179G>C	p.Asp727His	p.D727H	ENST00000264033	NM_005188.3	727	Gat/Cat																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025520	1025520	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			740	69	694	0	ENST00000358495.3:c.855G>C	p.Glu285Asp	p.E285D	ENST00000358495	NM_134424.2	285	gaG/gaC																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038881	12038881	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			660	47	525	0	ENST00000396373.4:c.1174G>T	p.Glu392Ter	p.E392*	ENST00000396373	NM_001987.4	392	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421078	49421078	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			671	64	699	0	ENST00000301067.7:c.14671C>G	p.Gln4891Glu	p.Q4891E	ENST00000301067	NM_003482.3	4891	Cag/Gag																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50490632	50490632	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			554	55	515	0	ENST00000394963.4:c.1270-1G>C		p.X424_splice	ENST00000394963	NM_003076.4	424																																																																																
BRCA2	675	MSKCC	GRCh37	13	32911186	32911186	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			630	47	552	0	ENST00000380152.3:c.2694G>C	p.Arg898Ser	p.R898S	ENST00000380152		898	agG/agC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912549	32912549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			718	46	556	0	ENST00000380152.3:c.4057G>A	p.Glu1353Lys	p.E1353K	ENST00000380152		1353	Gaa/Aaa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95598854	95598854	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			523	43	437	0	ENST00000343455.3:c.305C>G	p.Ser102Cys	p.S102C	ENST00000343455	NM_177438.2	102	tCt/tGt																																																																															
USP8	9101	MSKCC	GRCh37	15	50791103	50791103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			711	79	554	0	ENST00000307179.4:c.3175C>T	p.His1059Tyr	p.H1059Y	ENST00000307179		1059	Cac/Tac																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66774105	66774105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			799	61	654	0	ENST00000307102.5:c.581C>T	p.Ser194Phe	p.S194F	ENST00000307102	NM_002755.3	194	tCc/tTc																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2636853	2636853	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			819	54	711	0	ENST00000342085.4:c.1302G>C	p.Glu434Asp	p.E434D	ENST00000342085	NM_002613.4	434	gaG/gaC																																																																															
SLX4	84464	MSKCC	GRCh37	16	3652280	3652280	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			747	68	737	0	ENST00000294008.3:c.789G>C	p.Glu263Asp	p.E263D	ENST00000294008	NM_032444.2	263	gaG/gaC																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777797	3777797	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			858	88	792	0	ENST00000262367.5:c.7251G>C	p.Arg2417Ser	p.R2417S	ENST00000262367	NM_004380.2	2417	agG/agC																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858378	9858378	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			812	72	668	0	ENST00000330684.3:c.3023C>G	p.Ser1008Cys	p.S1008C	ENST00000330684	NM_001134407.1	1008	tCt/tGt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858553	9858553	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			773	62	688	0	ENST00000330684.3:c.2848C>T	p.Gln950Ter	p.Q950*	ENST00000330684	NM_001134407.1	950	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830339	72830339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			789	69	777	0	ENST00000268489.5:c.6242C>T	p.Pro2081Leu	p.P2081L	ENST00000268489	NM_006885.3	2081	cCa/cTa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81962190	81962190	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			586	46	529	0	ENST00000359376.3:c.2542C>G	p.Leu848Val	p.L848V	ENST00000359376	NM_002661.3	848	Ctt/Gtt																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217681	7217681	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			731	140	630	0	ENST00000380728.2:c.246G>C	p.Glu82Asp	p.E82D	ENST00000380728		82	gaG/gaC																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650895	37650895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			648	76	483	0	ENST00000447079.4:c.2367G>A	p.Met789Ile	p.M789I	ENST00000447079	NM_015083.1	789	atG/atA																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59853823	59853823	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			678	48	528	0	ENST00000259008.2:c.2036T>C	p.Leu679Pro	p.L679P	ENST00000259008	NM_032043.2	679	cTt/cCt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78919581	78919581	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			603	59	535	0	ENST00000306801.3:c.3140G>A	p.Cys1047Tyr	p.C1047Y	ENST00000306801	NM_020761.2	1047	tGc/tAc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30311753	30311753	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			567	39	424	0	ENST00000262643.3:c.607G>C	p.Glu203Gln	p.E203Q	ENST00000262643	NM_001238.2	203	Gag/Cag																																																																															
ERF	2077	MSKCC	GRCh37	19	42752922	42752922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			857	83	884	0	ENST00000222329.4:c.1342G>A	p.Glu448Lys	p.E448K	ENST00000222329	NM_006494.2	448	Gag/Aag																																																																															
ALK	238	MSKCC	GRCh37	2	29541185	29541185	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			651	72	535	0	ENST00000389048.3:c.1632G>C	p.Lys544Asn	p.K544N	ENST00000389048	NM_004304.4	544	aaG/aaC																																																																															
XPO1	7514	MSKCC	GRCh37	2	61722610	61722610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			511	47	398	0	ENST00000401558.2:c.1027C>T	p.Leu343Phe	p.L343F	ENST00000401558	NM_003400.3	343	Ctc/Ttc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99152252	99152252	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			561	45	450	0	ENST00000074304.5:c.331C>T	p.Gln111Ter	p.Q111*	ENST00000074304	NM_001134224.1	111	Cag/Tag																																																																															
BARD1	580	MSKCC	GRCh37	2	215632215	215632215	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			521	48	428	0	ENST00000260947.4:c.1559G>C	p.Arg520Thr	p.R520T	ENST00000260947	NM_000465.2	520	aGa/aCa																																																																															
EP300	2033	MSKCC	GRCh37	22	41572503	41572503	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			849	91	727	0	ENST00000263253.7:c.5032G>C	p.Glu1678Gln	p.E1678Q	ENST00000263253	NM_001429.3	1678	Gag/Cag																																																																															
MLH1	4292	MSKCC	GRCh37	3	37061819	37061819	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			649	66	691	0	ENST00000231790.2:c.903G>C	p.Gln301His	p.Q301H	ENST00000231790	NM_000249.3	301	caG/caC																																																																															
MITF	4286	MSKCC	GRCh37	3	69988264	69988264	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			561	59	482	0	ENST00000352241.4:c.598G>C	p.Glu200Gln	p.E200Q	ENST00000352241	NM_198159.2	200	Gaa/Caa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138382785	138382785	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			601	56	466	0	ENST00000289153.2:c.2759G>T	p.Arg920Ile	p.R920I	ENST00000289153	NM_006219.2	920	aGa/aTa																																																																															
ATR	545	MSKCC	GRCh37	3	142186796	142186796	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			495	42	432	0	ENST00000350721.4:c.6667C>G	p.Leu2223Val	p.L2223V	ENST00000350721	NM_001184.3	2223	Cta/Gta																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032111	26032111	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			1008	85	918	0	ENST00000244661.2:c.178G>T	p.Glu60Ter	p.E60*	ENST00000244661	NM_003537.3	60	Gag/Tag																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045798	26045798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			1080	66	944	0	ENST00000540144.1:c.160C>T	p.Arg54Cys	p.R54C	ENST00000540144	NM_003531.2	54	Cgc/Tgc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165267	32165267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			871	72	787	0	ENST00000375023.3:c.4861G>A	p.Asp1621Asn	p.D1621N	ENST00000375023	NM_004557.3	1621	Gat/Aat																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793835	89793835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			646	84	553	0	ENST00000336032.3:c.904G>A	p.Gly302Arg	p.G302R	ENST00000336032	NM_006813.2	302	Gga/Aga																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519721	137519721	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			603	75	555	1	ENST00000367739.4:c.917C>A	p.Ser306Ter	p.S306*	ENST00000367739	NM_000416.2	306	tCa/tAa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157454319	157454319	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			541	58	578	0	ENST00000346085.5:c.2529G>C	p.Gln843His	p.Q843H	ENST00000346085	NM_020732.3	843	caG/caC																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935676	13935676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			669	54	602	0	ENST00000405192.2:c.1180G>A	p.Asp394Asn	p.D394N	ENST00000405192	NM_001163147.1	394	Gat/Aat																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935701	13935701	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			607	62	544	0	ENST00000405192.2:c.1155G>C	p.Glu385Asp	p.E385D	ENST00000405192	NM_001163147.1	385	gaG/gaC																																																																															
MED12	9968	MSKCC	GRCh37	X	70339707	70339707	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			297	57	294	0	ENST00000374080.3:c.376C>G	p.Leu126Val	p.L126V	ENST00000374080		126	Ctc/Gtc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15964909	15964913	+	missense_variant	Missense_Mutation	ONP	GAATG	GAATG	AAATA			P-0061305-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			749	63	642	0	ENST00000268712.3:c.5683_5687delinsTATTT	p.His1895_Ser1896delinsTyrPhe	p.H1895_S1896delinsYF	ENST00000268712	NM_006311.3	1895	CATTCt/TATTTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0062315-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	132	497	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0062315-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	30	553	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306996	65306996	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs375979659		P-0062315-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	113	560	2	ENST00000342505.4:c.2581C>A	p.Pro861Thr	p.P861T	ENST00000342505	NM_002227.2	861	Cca/Aca																																																																															
KDR	3791	MSKCC	GRCh37	4	55976872	55976872	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs551579207		P-0062315-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	25	444	0	ENST00000263923.4:c.1040G>A	p.Arg347His	p.R347H	ENST00000263923	NM_002253.2	347	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577512	7577512	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062315-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	26	500	0	ENST00000269305.4:c.769C>G	p.Leu257Val	p.L257V	ENST00000269305	NM_001126112.2	257	Ctg/Gtg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58725266	58725266	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062315-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	28	441	0	ENST00000305921.3:c.840C>G	p.Ser280Arg	p.S280R	ENST00000305921	NM_003620.3	280	agC/agG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242486	+	inframe_deletion	In_Frame_Del	DEL	TTAAGAGAAGCAACATCT	TTAAGAGAAGCAACATCT	-	rs121913440		P-0062551-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			146	231	437	0	ENST00000275493.2:c.2239_2256del	p.Leu747_Ser752del	p.L747_S752del	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAACATCT/-																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0062607-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			598	79	595	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0062607-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			577	88	628	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
ATM	472	MSKCC	GRCh37	11	108218089	108218089	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587779874		P-0062607-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			171	65	110	0	ENST00000278616.4:c.8668C>G	p.Leu2890Val	p.L2890V	ENST00000278616	NM_000051.3	2890	Cta/Gta																																																																															
ERG	2078	MSKCC	GRCh37	21	39775433	39775433	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1168532464		P-0062607-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			593	40	659	3	ENST00000288319.7:c.587G>A	p.Arg196Lys	p.R196K	ENST00000288319	NM_182918.3	196	aGa/aAa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715684	30715684	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062607-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			555	70	550	0	ENST00000359013.4:c.1417T>C	p.Tyr473His	p.Y473H	ENST00000359013	NM_001024847.2	473	Tac/Cac																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271333	26271333	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062607-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			892	55	838	7	ENST00000305910.3:c.280C>T	p.Gln94Ter	p.Q94*	ENST00000305910	NM_003534.2	94	Cag/Tag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89881007	89881008	+	frameshift_variant	Frame_Shift_Ins	INS	CA	CA	ATTCTAG			P-0062607-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			446	100	307	0	ENST00000389301.3:c.203_204delinsCTAGAAT	p.Leu68ProfsTer12	p.L68Pfs*12	ENST00000389301	NM_000135.2	68	cTG/cCTAGAAT																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101909971	101909971	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	43	438	0	ENST00000374994.4:c.1291C>A	p.Leu431Ile	p.L431I	ENST00000374994	NM_004612.2	431	Ctt/Att																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584607	48584607	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	62	509	0	ENST00000342988.3:c.781del	p.His261IlefsTer75	p.H261Ifs*75	ENST00000342988	NM_005359.5	260	taC/ta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0062673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	41	371	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ATM	472	MSKCC	GRCh37	11	108213994	108213994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	48	450	0	ENST00000278616.4:c.8314G>A	p.Gly2772Arg	p.G2772R	ENST00000278616	NM_000051.3	2772	Gga/Aga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554427	63554427	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0062673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			910	113	692	0	ENST00000307078.5:c.312C>A	p.Cys104Ter	p.C104*	ENST00000307078	NM_004655.3	104	tgC/tgA																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101909977	101909981	+	missense_variant	Missense_Mutation	ONP	CCTTC	CCTTC	ACTTT			P-0062673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	45	469	0	ENST00000374994.4:c.1297_1301delinsACTTT	p.Pro433_Ser434delinsThrPhe	p.P433_S434delinsTF	ENST00000374994	NM_004612.2	433	CCTTCt/ACTTTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0062682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	167	475	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0062682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	272	378	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777991	3777991	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771546273		P-0062682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			800	215	592	0	ENST00000262367.5:c.7057C>T	p.Arg2353Trp	p.R2353W	ENST00000262367	NM_004380.2	2353	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0062682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	147	483	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0062682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			705	162	458	0	ENST00000257430.4:c.4473del	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0062682-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	98	311	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0062706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1220	54	699	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53243895	53243895	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	28	302	0	ENST00000375401.3:c.1098G>A	p.Trp366Ter	p.W366*	ENST00000375401	NM_004187.3	366	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0062709-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	142	488	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0062709-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	170	667	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575132	48575132	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062709-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	109	463	0	ENST00000342988.3:c.326T>C	p.Leu109Pro	p.L109P	ENST00000342988	NM_005359.5	109	cTa/cCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0062709-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	86	378	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099460	27099461	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0062709-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			780	167	554	0	ENST00000324856.7:c.3698dup	p.Tyr1233Ter	p.Y1233*	ENST00000324856	NM_006015.4	1233	tat/tAat																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130342	11130342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062709-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	161	506	0	ENST00000344626.4:c.2581G>A	p.Glu861Lys	p.E861K	ENST00000344626	NM_003072.3	861	Gag/Aag																																																																															
TEK	7010	MSKCC	GRCh37	9	27183466	27183466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062709-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	78	471	0	ENST00000380036.4:c.1040G>A	p.Arg347Lys	p.R347K	ENST00000380036	NM_000459.3	347	aGg/aAg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0062711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	120	480	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0062711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	292	666	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0062711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			764	163	567	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11303248	11303248	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	267	579	0	ENST00000361445.4:c.1335G>T	p.Arg445Ser	p.R445S	ENST00000361445	NM_004958.3	445	agG/agT																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230459242	230459242	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	268	622	0	ENST00000525115.1:c.1297A>G	p.Ser433Gly	p.S433G	ENST00000525115		433	Agc/Ggc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15995309	15995309	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			688	91	538	0	ENST00000268712.3:c.2884C>G	p.Arg962Gly	p.R962G	ENST00000268712	NM_006311.3	962	Cga/Gga																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38173549	38173549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	239	476	0	ENST00000317025.8:c.1867A>G	p.Ile623Val	p.I623V	ENST00000317025	NM_023034.1	623	Att/Gtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578518	7578518	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs28934875		P-0062712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	352	588	0	ENST00000269305.4:c.412G>C	p.Ala138Pro	p.A138P	ENST00000269305	NM_001126112.2	138	Gcc/Ccc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0062712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	72	451	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971153	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	155	630	0	ENST00000304494.5:c.205del	p.Glu69SerfsTer77	p.E69Sfs*77	ENST00000304494	NM_000077.4	69	Gag/ag																																																																															
PAK1	5058	MSKCC	GRCh37	11	77069962	77069962	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1221370333		P-0062712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	100	561	0	ENST00000356341.3:c.578G>A	p.Arg193His	p.R193H	ENST00000356341	NM_002576.4	193	cGc/cAc																																																																															
CALR	811	MSKCC	GRCh37	19	13054408	13054408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	353	612	0	ENST00000316448.5:c.1018G>A	p.Glu340Lys	p.E340K	ENST00000316448	NM_004343.3	340	Gag/Aag																																																																															
CALR	811	MSKCC	GRCh37	19	13054611	13054611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	264	728	0	ENST00000316448.5:c.1138G>A	p.Glu380Lys	p.E380K	ENST00000316448	NM_004343.3	380	Gag/Aag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489052	56489052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	56	438	0	ENST00000267101.3:c.1871C>T	p.Pro624Leu	p.P624L	ENST00000267101	NM_001982.3	624	cCa/cTa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2122938	2122938	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	104	570	0	ENST00000219476.3:c.2309T>C	p.Leu770Pro	p.L770P	ENST00000219476	NM_000548.3	770	cTg/cCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984450	72984450	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	146	591	0	ENST00000268489.5:c.3134G>C	p.Cys1045Ser	p.C1045S	ENST00000268489	NM_006885.3	1045	tGt/tCt																																																																															
CALR	811	MSKCC	GRCh37	19	13054372	13054372	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	280	537	0	ENST00000316448.5:c.982G>C	p.Asp328His	p.D328H	ENST00000316448	NM_004343.3	328	Gac/Cac																																																																															
CALR	811	MSKCC	GRCh37	19	13054635	13054635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	265	710	0	ENST00000316448.5:c.1162G>A	p.Asp388Asn	p.D388N	ENST00000316448	NM_004343.3	388	Gat/Aat																																																																															
UPF1	5976	MSKCC	GRCh37	19	18956873	18956873	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	222	526	0	ENST00000262803.5:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000262803	NM_002911.3	106	Gag/Cag																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792451	33792451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			937	383	561	0	ENST00000498907.2:c.870G>T	p.Glu290Asp	p.E290D	ENST00000498907	NM_004364.3	290	gaG/gaT																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	166	311	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			906	285	964	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851285	156851285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778520978		P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	207	725	0	ENST00000524377.1:c.2242C>T	p.Arg748Trp	p.R748W	ENST00000524377	NM_002529.3	748	Cgg/Tgg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885939	111885939	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1048	71	851	0	ENST00000341259.2:c.1566del	p.Glu523SerfsTer25	p.E523Sfs*25	ENST00000341259	NM_005475.2	521	Ccc/cc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974899	15974899	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			889	66	597	0	ENST00000268712.3:c.3976C>T	p.Arg1326Ter	p.R1326*	ENST00000268712	NM_006311.3	1326	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436128	56436128	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			878	193	737	0	ENST00000407977.2:c.1009C>T	p.Arg337Ter	p.R337*	ENST00000407977		337	Cga/Tga																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1123	85	879	2	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115416	115115416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			871	95	574	0	ENST00000257566.3:c.910C>T	p.Arg304Trp	p.R304W	ENST00000257566	NM_016569.3	304	Cgg/Tgg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412634	63412634	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753930754		P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	86	321	1	ENST00000330258.3:c.533G>A	p.Arg178His	p.R178H	ENST00000330258	NM_152424.3	178	cGt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216643	36216643	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775753450		P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			996	88	818	2	ENST00000222270.7:c.3809G>A	p.Arg1270His	p.R1270H	ENST00000222270	NM_014727.1	1270	cGc/cAc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457675	67457675	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1131	82	791	0	ENST00000327367.4:c.488del	p.Asn163ThrfsTer23	p.N163Tfs*23	ENST00000327367	NM_005902.3	162	gAa/ga																																																																															
ABL1	25	MSKCC	GRCh37	9	133760529	133760529	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371656033		P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			975	62	779	0	ENST00000318560.5:c.2852C>T	p.Pro951Leu	p.P951L	ENST00000318560	NM_005157.4	951	cCg/cTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261373	16261373	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773726905		P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1049	106	778	3	ENST00000375759.3:c.8638G>A	p.Val2880Met	p.V2880M	ENST00000375759	NM_015001.2	2880	Gtg/Atg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38952300	38952300	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	67	491	0	ENST00000357387.3:c.3125C>T	p.Ser1042Leu	p.S1042L	ENST00000357387	NM_152756.3	1042	tCg/tTg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519420	176519420	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750977138		P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			885	85	834	0	ENST00000292408.4:c.826G>A	p.Asp276Asn	p.D276N	ENST00000292408	NM_213647.1	276	Gat/Aat																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150936507	150936507	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			936	90	696	0	ENST00000271640.5:c.3706T>G	p.Phe1236Val	p.F1236V	ENST00000271640	NM_001145415.1	1236	Ttc/Gtc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94204884	94204884	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	42	266	0	ENST00000323929.3:c.701del	p.Leu234TrpfsTer18	p.L234Wfs*18	ENST00000323929	NM_005591.3	234	tTg/tg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43785234	43785234	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	215	546	0	ENST00000382044.4:c.7+1G>A		p.X3_splice	ENST00000382044	NM_001141980.1	3																																																																																
CDK12	51755	MSKCC	GRCh37	17	37681042	37681042	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			996	64	668	1	ENST00000447079.4:c.3211A>G	p.Thr1071Ala	p.T1071A	ENST00000447079	NM_015083.1	1071	Acc/Gcc																																																																															
SMARCE1	6605	MSKCC	GRCh37	17	38793793	38793793	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			838	64	585	1	ENST00000348513.6:c.188del	p.Pro63GlnfsTer8	p.P63Qfs*8	ENST00000348513	NM_003079.4	63	cCa/ca																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6227065	6227065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1070	102	790	1	ENST00000252674.7:c.469G>A	p.Asp157Asn	p.D157N	ENST00000252674	NM_005934.3	157	Gac/Aac																																																																															
MSH2	4436	MSKCC	GRCh37	2	47672730	47672731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	156	382	0	ENST00000233146.2:c.1321dup	p.Thr441AsnfsTer2	p.T441Nfs*2	ENST00000233146	NM_000251.2	440	-/A																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187134	38187134	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778667478		P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			784	95	605	1	ENST00000317025.8:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000317025	NM_023034.1	448	cGg/cAg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737136	145737136	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202134651		P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			822	275	828	0	ENST00000428558.2:c.3430C>T	p.Arg1144Cys	p.R1144C	ENST00000428558	NM_004260.3	1144	Cgc/Tgc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448297	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TG			P-0062736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1010	88	717	2	ENST00000407977.2:c.350delinsCA	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cGc/cCAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0062744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	320	801	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0062744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	74	597	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	18	551	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670658	134670658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771145808		P-0062744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	97	662	2	ENST00000398015.3:c.569G>A	p.Arg190His	p.R190H	ENST00000398015	NM_004441.4	190	cGt/cAt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851741	134851741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	132	776	0	ENST00000398015.3:c.1147C>A	p.Gln383Lys	p.Q383K	ENST00000398015	NM_004441.4	383	Cag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112128147	112128148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0062744-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	15	322	0	ENST00000257430.4:c.652dup	p.Ile218AsnfsTer34	p.I218Nfs*34	ENST00000257430	NM_000038.5	217	aga/agAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0062761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	105	272	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65332658	65332658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs944169508		P-0062761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	193	434	0	ENST00000342505.4:c.881C>T	p.Ser294Leu	p.S294L	ENST00000342505	NM_002227.2	294	tCa/tTa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518693	103518693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	137	364	0	ENST00000355739.4:c.2281G>T	p.Ala761Ser	p.A761S	ENST00000355739	NM_000123.3	761	Gct/Tct																																																																															
SETD2	29072	MSKCC	GRCh37	3	47127687	47127687	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0062761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	205	312	0	ENST00000409792.3:c.5395G>T	p.Glu1799Ter	p.E1799*	ENST00000409792	NM_014159.6	1799	Gag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47139533	47139533	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	174	422	0	ENST00000409792.3:c.5054G>T	p.Cys1685Phe	p.C1685F	ENST00000409792	NM_014159.6	1685	tGc/tTc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176516649	176516649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	108	373	0	ENST00000292408.4:c.46G>A	p.Gly16Arg	p.G16R	ENST00000292408	NM_213647.1	16	Ggg/Agg																																																																															
POT1	25913	MSKCC	GRCh37	7	124465366	124465366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	96	311	0	ENST00000357628.3:c.1732G>T	p.Asp578Tyr	p.D578Y	ENST00000357628	NM_015450.2	578	Gac/Tac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518063	8518064	+	missense_variant	Missense_Mutation	DNP	TC	TC	CT			P-0062761-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	135	421	0	ENST00000356435.5:c.1327_1328delinsAG	p.Glu443Arg	p.E443R	ENST00000356435		443	GAg/AGg																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158732	26158732	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0062762-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	48	238	0	ENST00000289316.2:c.335T>A	p.Val112Glu	p.V112E	ENST00000289316	NM_138720.2	112	gTg/gAg																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5549515	5549515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062762-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	103	575	0	ENST00000397747.3:c.542G>A	p.Arg181His	p.R181H	ENST00000397747	NM_025239.3	181	cGc/cAc																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015048	37015048	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062762-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	89	560	0	ENST00000358127.4:c.356T>C	p.Leu119Pro	p.L119P	ENST00000358127	NM_001280556.1	119	cTg/cCg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515036	103515036	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775996769		P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			716	108	524	0	ENST00000355739.4:c.1537G>A	p.Ala513Thr	p.A513T	ENST00000355739	NM_000123.3	513	Gca/Aca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	19	190	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			871	119	555	2	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	54	337	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214604	5214604	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116515629		P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			809	125	545	0	ENST00000357368.4:c.4462G>A	p.Val1488Ile	p.V1488I	ENST00000357368	NM_002850.3	1488	Gtc/Atc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921551	178921551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	34	290	0	ENST00000263967.3:c.1033A>G	p.Asn345Asp	p.N345D	ENST00000263967	NM_006218.2	345	Aat/Gat																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			855	112	544	3	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs758630849		P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	62	438	0	ENST00000305921.3:c.1349del	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135777085	135777085	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1331635112		P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	72	308	0	ENST00000298552.3:c.2393C>T	p.Thr798Met	p.T798M	ENST00000298552	NM_001162426.1	798	aCg/aTg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866321	42866321	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766047137		P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			869	136	566	0	ENST00000398585.3:c.311C>T	p.Thr104Met	p.T104M	ENST00000398585	NM_001135099.1	104	aCg/aTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905055	50905055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	92	488	0	ENST00000440232.2:c.342del	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	113	Ggg/gg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905504	50905504	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373192520		P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			885	126	601	0	ENST00000440232.2:c.632G>A	p.Arg211His	p.R211H	ENST00000440232	NM_002691.3	211	cGc/cAc																																																																															
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			773	100	430	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67198852	67198852	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185889430		P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	131	423	0	ENST00000312629.5:c.323G>A	p.Arg108His	p.R108H	ENST00000312629	NM_003952.2	108	cGc/cAc																																																																															
CIC	23152	MSKCC	GRCh37	19	42799059	42799059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			797	123	545	0	ENST00000575354.2:c.4543C>T	p.Arg1515Cys	p.R1515C	ENST00000575354	NM_015125.3	1515	Cgc/Tgc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508082	106508082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	85	484	0	ENST00000359195.3:c.76C>T	p.Arg26Cys	p.R26C	ENST00000359195	NM_002649.2	26	Cgc/Tgc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442567	52442567	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			734	104	456	0	ENST00000460680.1:c.178C>T	p.Arg60Ter	p.R60*	ENST00000460680	NM_004656.3	60	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920404	114920404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	208	417	0	ENST00000543371.1:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000543371	NM_001198531.1	449	Gca/Aca																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138111	2138111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139779505		P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			948	115	639	0	ENST00000219476.3:c.5131G>A	p.Val1711Met	p.V1711M	ENST00000219476	NM_000548.3	1711	Gtg/Atg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56152566	56152566	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			745	122	483	0	ENST00000399503.3:c.622C>T	p.Arg208Ter	p.R208*	ENST00000399503	NM_005921.1	208	Cga/Tga																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281360	49281360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201503697		P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			741	104	466	0	ENST00000282018.3:c.407G>A	p.Arg136His	p.R136H	ENST00000282018	NM_020377.2	136	cGt/cAt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375316	15375316	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200264318		P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			787	104	496	0	ENST00000263377.2:c.1111G>A	p.Ala371Thr	p.A371T	ENST00000263377	NM_058243.2	371	Gcc/Acc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492694	56492694	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	59	456	0	ENST00000407977.2:c.245T>C	p.Leu82Ser	p.L82S	ENST00000407977		82	tTa/tCa																																																																															
B2M	567	MSKCC	GRCh37	15	45007729	45007729	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			752	87	467	0	ENST00000558401.1:c.176T>G	p.Leu59Ter	p.L59*	ENST00000558401	NM_004048.2	59	tTa/tGa																																																																															
ATR	545	MSKCC	GRCh37	3	142242885	142242885	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1194388677		P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	79	409	0	ENST00000350721.4:c.4102C>T	p.Arg1368Ter	p.R1368*	ENST00000350721	NM_001184.3	1368	Cga/Tga																																																																															
SOS1	6654	MSKCC	GRCh37	2	39249994	39249994	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	68	373	0	ENST00000402219.2:c.1575A>G	p.Ile525Met	p.I525M	ENST00000402219	NM_005633.3	525	atA/atG																																																																															
AKT2	208	MSKCC	GRCh37	19	40741906	40741906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			815	125	602	0	ENST00000392038.2:c.1066G>A	p.Glu356Lys	p.E356K	ENST00000392038	NM_001626.4	356	Gag/Aag																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257169	19257169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	95	377	0	ENST00000162023.5:c.794C>A	p.Pro265Gln	p.P265Q	ENST00000162023		265	cCg/cAg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45651187	45651187	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs749300015		P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			761	113	523	0	ENST00000407780.3:c.838C>T	p.Arg280Ter	p.R280*	ENST00000407780	NM_001283052.1	280	Cga/Tga																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932702	39932702	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			813	107	586	0	ENST00000378444.4:c.1897C>A	p.Leu633Ile	p.L633I	ENST00000378444	NM_001123385.1	633	Ctt/Att																																																																															
AKT2	208	MSKCC	GRCh37	19	40741184	40741184	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781260194		P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	107	478	1	ENST00000392038.2:c.1249G>A	p.Val417Met	p.V417M	ENST00000392038	NM_001626.4	417	Gtg/Atg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228789	36228789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			932	125	614	0	ENST00000222270.7:c.7688C>T	p.Ala2563Val	p.A2563V	ENST00000222270	NM_014727.1	2563	gCc/gTc																																																																															
MSI1	4440	MSKCC	GRCh37	12	120794779	120794779	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768324684		P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			782	136	519	0	ENST00000257552.2:c.578C>T	p.Thr193Met	p.T193M	ENST00000257552	NM_002442.3	193	aCg/aTg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615776	1615776	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182482393		P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			793	137	506	0	ENST00000344749.5:c.1495C>T	p.Arg499Trp	p.R499W	ENST00000344749	NM_001136139.2	499	Cgg/Tgg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	43	237	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			912	50	569	1	ENST00000295900.6:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000295900	NM_000333.3	778	ggC/gg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21348931	21348931	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372417941		P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			956	52	580	1	ENST00000215739.8:c.1700G>A	p.Arg567His	p.R567H	ENST00000215739	NM_006767.3	567	cGc/cAc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205092	38205092	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	38	402	2	ENST00000317025.8:c.598del	p.Ser200AlafsTer20	p.S200Afs*20	ENST00000317025	NM_023034.1	200	Agc/gc																																																																															
HRAS	3265	MSKCC	GRCh37	11	533881	533881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs727503093		P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			910	118	550	1	ENST00000311189.7:c.175G>A	p.Ala59Thr	p.A59T	ENST00000311189		59	Gcc/Acc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29005279	29005279	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	38	331	0	ENST00000282397.4:c.982A>G	p.Ile328Val	p.I328V	ENST00000282397	NM_002019.4	328	Ata/Gta																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2214004	2214004	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			877	89	562	0	ENST00000326181.6:c.81+2T>C		p.X27_splice	ENST00000326181	NM_032271.2	27																																																																																
FANCA	2175	MSKCC	GRCh37	16	89871769	89871769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	84	396	0	ENST00000389301.3:c.628C>T	p.Leu210Phe	p.L210F	ENST00000389301	NM_000135.2	210	Ctc/Ttc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650949	37650949	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	58	365	0	ENST00000447079.4:c.2419+2T>C		p.X807_splice	ENST00000447079	NM_015083.1	807																																																																																
MLLT1	4298	MSKCC	GRCh37	19	6213772	6213772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			773	102	476	2	ENST00000252674.7:c.1444C>T	p.Pro482Ser	p.P482S	ENST00000252674	NM_005934.3	482	Cct/Tct																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10252756	10252756	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			856	76	487	0	ENST00000340748.4:c.3209A>G	p.Glu1070Gly	p.E1070G	ENST00000340748		1070	gAg/gGg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375046	31375046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			734	91	483	0	ENST00000328111.2:c.443G>A	p.Arg148Gln	p.R148Q	ENST00000328111	NM_006892.3	148	cGg/cAg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164776	36164776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			903	136	658	0	ENST00000300305.3:c.1099G>A	p.Gly367Ser	p.G367S	ENST00000300305		367	Ggc/Agc																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383900	84383900	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775345294		P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	46	411	0	ENST00000321945.7:c.952G>A	p.Asp318Asn	p.D318N	ENST00000321945	NM_139076.2	318	Gat/Aat																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31238245	31238245	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	26	262	0	ENST00000376228.5:c.637G>T	p.Val213Leu	p.V213L	ENST00000376228	NM_002117.5	213	Gtg/Ttg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411460	63411460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			824	125	587	0	ENST00000330258.3:c.1707G>T	p.Leu569Phe	p.L569F	ENST00000330258	NM_152424.3	569	ttG/ttT																																																																															
MED12	9968	MSKCC	GRCh37	X	70360685	70360685	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			767	123	495	0	ENST00000374080.3:c.6245A>G	p.Gln2082Arg	p.Q2082R	ENST00000374080		2082	cAg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			43	42	218	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165657	118165657	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs565811357		P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			100	11	305	0	ENST00000369448.3:c.167G>T	p.Arg56Leu	p.R56L	ENST00000369448	NM_017709.3	56	cGc/cTc																																																																															
FH	2271	MSKCC	GRCh37	1	241682974	241682974	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs755886213		P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			161	14	268	0	ENST00000366560.3:c.49G>C	p.Ala17Pro	p.A17P	ENST00000366560	NM_000143.3	17	Gct/Cct																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52668681	52668681	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			114	37	387	0	ENST00000394830.3:c.1238C>G	p.Ser413Ter	p.S413*	ENST00000394830	NM_018313.4	413	tCa/tGa																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799628	72799628	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			132	24	339	0	ENST00000325599.8:c.1541C>G	p.Ala514Gly	p.A514G	ENST00000325599	NM_018130.2	514	gCc/gGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100324	8100324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs904307886		P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	21	503	0	ENST00000346208.3:c.298G>A	p.Gly100Ser	p.G100S	ENST00000346208		100	Ggc/Agc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420529	49420529	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			92	26	262	0	ENST00000301067.7:c.15220G>T	p.Gly5074Cys	p.G5074C	ENST00000301067	NM_003482.3	5074	Ggc/Tgc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109968	115109968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			52	12	118	0	ENST00000257566.3:c.1910G>T	p.Arg637Leu	p.R637L	ENST00000257566	NM_016569.3	637	cGg/cTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911271	32911271	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs786201837		P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			154	11	230	0	ENST00000380152.3:c.2779A>G	p.Met927Val	p.M927V	ENST00000380152		927	Atg/Gtg																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66526445	66526445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	31	196	0	ENST00000358598.2:c.1001C>T	p.Pro334Leu	p.P334L	ENST00000358598	NM_212471.2	334	cCt/cTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221215	1221215	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs137853083		P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			71	34	575	0	ENST00000326873.7:c.738C>G	p.Tyr246Ter	p.Y246*	ENST00000326873	NM_000455.4	246	taC/taG																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610466	10610466	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			76	23	302	0	ENST00000171111.5:c.244C>T	p.Gln82Ter	p.Q82*	ENST00000171111	NM_203500.1	82	Cag/Tag																																																																															
ERG	2078	MSKCC	GRCh37	21	39755657	39755657	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			96	29	420	0	ENST00000288319.7:c.1108C>G	p.Arg370Gly	p.R370G	ENST00000288319	NM_182918.3	370	Cgt/Ggt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11205075	11205075	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			86	32	450	0	ENST00000361445.4:c.4714del	p.Asp1572MetfsTer4	p.D1572Mfs*4	ENST00000361445	NM_004958.3	1572	Gat/at																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129327	152129328	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			81	12	382	0	ENST00000206249.3:c.281dup	p.Leu100ThrfsTer57	p.L100Tfs*57	ENST00000206249	NM_000125.3	94	ctg/cTtg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	104	78	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	115	201	0	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780908	9780908	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	51	342	0	ENST00000377346.4:c.1630G>C	p.Glu544Gln	p.E544Q	ENST00000377346	NM_005026.3	544	Gag/Cag																																																																															
MST1R	4486	MSKCC	GRCh37	3	49932943	49932943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	88	588	0	ENST00000296474.3:c.3001C>T	p.Gln1001Ter	p.Q1001*	ENST00000296474	NM_002447.2	1001	Cag/Tag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213784	66213784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	125	322	0	ENST00000273854.3:c.2646G>T	p.Met882Ile	p.M882I	ENST00000273854	NM_004439.5	882	atG/atT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213891	66213891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	122	367	0	ENST00000273854.3:c.2539C>A	p.Pro847Thr	p.P847T	ENST00000273854	NM_004439.5	847	Cca/Aca																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081639	143081639	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	110	283	0	ENST00000262992.4:c.1435G>T	p.Gly479Ter	p.G479*	ENST00000262992	NM_001101669.1	479	Gga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332772	153332772	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	158	313	0	ENST00000281708.4:c.184G>C	p.Val62Leu	p.V62L	ENST00000281708	NM_033632.3	62	Gta/Cta																																																																															
RASA1	5921	MSKCC	GRCh37	5	86670658	86670658	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	46	157	0	ENST00000274376.6:c.1936G>A	p.Asp646Asn	p.D646N	ENST00000274376	NM_002890.2	646	Gat/Aat																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271350	26271350	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs532386575		P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	526	839	1	ENST00000305910.3:c.263C>T	p.Ser88Phe	p.S88F	ENST00000305910	NM_003534.2	88	tCc/tTc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683796	162683796	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	36	206	0	ENST00000366898.1:c.173A>T	p.Asn58Ile	p.N58I	ENST00000366898	NM_004562.2	58	aAt/aTt																																																																															
SMO	6608	MSKCC	GRCh37	7	128848638	128848638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	521	420	0	ENST00000249373.3:c.1303G>T	p.Gly435Trp	p.G435W	ENST00000249373	NM_005631.4	435	Ggg/Tgg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5029857	5029857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	152	299	1	ENST00000381652.3:c.301G>A	p.Val101Ile	p.V101I	ENST00000381652	NM_004972.3	101	Gtc/Atc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8733783	8733783	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	115	343	0	ENST00000356435.5:c.61G>C	p.Glu21Gln	p.E21Q	ENST00000356435		21	Gag/Cag																																																																															
ABL1	25	MSKCC	GRCh37	9	133760285	133760285	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	114	283	0	ENST00000318560.5:c.2608G>T	p.Ala870Ser	p.A870S	ENST00000318560	NM_005157.4	870	Gcc/Tcc																																																																															
ABL1	25	MSKCC	GRCh37	9	133760703	133760703	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	104	374	0	ENST00000318560.5:c.3026G>T	p.Arg1009Leu	p.R1009L	ENST00000318560	NM_005157.4	1009	cGa/cTa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246071	46246071	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	245	253	0	ENST00000334344.6:c.4165G>T	p.Glu1389Ter	p.E1389*	ENST00000334344	NM_152641.2	1389	Gag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912735	32912735	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507327		P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	115	641	0	ENST00000380152.3:c.4243G>A	p.Glu1415Lys	p.E1415K	ENST00000380152		1415	Gag/Aag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913155	32913155	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	105	696	1	ENST00000380152.3:c.4663G>T	p.Glu1555Ter	p.E1555*	ENST00000380152		1555	Gaa/Taa																																																																															
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	T			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	64	286	0	ENST00000558401.1:c.1A>T	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Ttg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348241	348241	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	61	165	0	ENST00000262320.3:c.1265G>T	p.Gly422Val	p.G422V	ENST00000262320	NM_003502.3	422	gGt/gTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827904	72827904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	88	697	0	ENST00000268489.5:c.8677G>C	p.Gly2893Arg	p.G2893R	ENST00000268489	NM_006885.3	2893	Ggt/Cgt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16024467	16024467	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	142	335	0	ENST00000268712.3:c.1751G>T	p.Arg584Leu	p.R584L	ENST00000268712	NM_006311.3	584	cGg/cTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17948834	17948834	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	410	454	0	ENST00000458235.1:c.1608C>A	p.Tyr536Ter	p.Y536*	ENST00000458235	NM_000215.3	536	taC/taA																																																																															
CIC	23152	MSKCC	GRCh37	19	42795860	42795860	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	59	437	0	ENST00000575354.2:c.2849C>G	p.Ser950Ter	p.S950*	ENST00000575354	NM_015125.3	950	tCa/tGa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40710649	40710649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	38	204	0	ENST00000373198.4:c.4202G>T	p.Gly1401Val	p.G1401V	ENST00000373198	NM_133170.3	1401	gGa/gTa																																																																															
EP300	2033	MSKCC	GRCh37	22	41513268	41513268	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	212	343	0	ENST00000263253.7:c.172G>C	p.Gly58Arg	p.G58R	ENST00000263253	NM_001429.3	58	Ggt/Cgt																																																																															
ATR	545	MSKCC	GRCh37	3	142268452	142268453	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	57	187	0	ENST00000350721.4:c.3039_3040del	p.Ile1014SerfsTer12	p.I1014Sfs*12	ENST00000350721	NM_001184.3	1013	ctCAtt/cttt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103665	47103666	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs36092203		P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	65	258	0	ENST00000409792.3:c.6280dup	p.Arg2094LysfsTer4	p.R2094Kfs*4	ENST00000409792	NM_014159.6	2094	agg/aAgg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217039	2217039	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	272	355	0	ENST00000398665.3:c.2497del	p.Leu833CysfsTer18	p.L833Cfs*18	ENST00000398665	NM_032482.2	832	Ccc/cc																																																																															
RB1	5925	MSKCC	GRCh37	13	49030373	49030374	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	T			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	180	234	2	ENST00000267163.4:c.1848_1849delinsT	p.Lys616AsnfsTer7	p.K616Nfs*7	ENST00000267163	NM_000321.2	616	aaAGgt/aaTgt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682533	37682533	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	260	326	0	ENST00000447079.4:c.3724C>T	p.Arg1242Ter	p.R1242*	ENST00000447079	NM_015083.1	1242	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs786201838		P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	60	413	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																															
RB1	5925	MSKCC	GRCh37	13	49039164	49039164	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913297		P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	38	265	1	ENST00000267163.4:c.2242G>T	p.Glu748Ter	p.E748*	ENST00000267163	NM_000321.2	748	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578245	7578245	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780072		P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	8	446	2	ENST00000269305.4:c.604C>T	p.Arg202Cys	p.R202C	ENST00000269305	NM_001126112.2	202	Cgt/Tgt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175996772	175996772	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	25	395	0	ENST00000367669.3:c.1665G>C	p.Lys555Asn	p.K555N	ENST00000367669	NM_022457.5	555	aaG/aaC																																																																															
INHA	3623	MSKCC	GRCh37	2	220439785	220439785	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1037869771		P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	53	476	0	ENST00000243786.2:c.638C>T	p.Pro213Leu	p.P213L	ENST00000243786	NM_002191.3	213	cCc/cTc																																																																															
KDR	3791	MSKCC	GRCh37	4	55981455	55981455	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	36	437	0	ENST00000263923.4:c.482T>A	p.Leu161His	p.L161H	ENST00000263923	NM_002253.2	161	cTt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532825	187532825	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	31	462	0	ENST00000441802.2:c.9568G>T	p.Glu3190Ter	p.E3190*	ENST00000441802	NM_005245.3	3190	Gaa/Taa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519477	176519477	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	35	420	0	ENST00000292408.4:c.883G>T	p.Gly295Ter	p.G295*	ENST00000292408	NM_213647.1	295	Gga/Tga																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056366	26056366	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	80	266	0	ENST00000343677.2:c.291A>T	p.Lys97Asn	p.K97N	ENST00000343677	NM_005319.3	97	aaA/aaT																																																																															
CARD11	84433	MSKCC	GRCh37	7	2969703	2969703	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	27	328	0	ENST00000396946.4:c.1576G>T	p.Gly526Trp	p.G526W	ENST00000396946	NM_032415.4	526	Ggg/Tgg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729784	41729784	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	65	453	0	ENST00000242208.4:c.745G>T	p.Glu249Ter	p.E249*	ENST00000242208	NM_002192.2	249	Gag/Tag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741773	145741773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756213173		P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	32	366	0	ENST00000428558.2:c.730G>A	p.Glu244Lys	p.E244K	ENST00000428558	NM_004260.3	244	Gaa/Aaa																																																																															
RET	5979	MSKCC	GRCh37	10	43612158	43612158	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	14	282	0	ENST00000355710.3:c.2263G>C	p.Val755Leu	p.V755L	ENST00000355710	NM_020975.4	755	Gtg/Ctg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864358	57864358	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	27	545	0	ENST00000228682.2:c.1835T>C	p.Ile612Thr	p.I612T	ENST00000228682	NM_005269.2	612	aTa/aCa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109670	115109670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	18	360	0	ENST00000257566.3:c.2208C>A	p.Asp736Glu	p.D736E	ENST00000257566	NM_016569.3	736	gaC/gaA																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435625	110435625	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	33	58	0	ENST00000375856.3:c.2776G>T	p.Glu926Ter	p.E926*	ENST00000375856	NM_003749.2	926	Gag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877462	40877462	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	17	245	0	ENST00000373198.4:c.2234G>T	p.Gly745Val	p.G745V	ENST00000373198	NM_133170.3	745	gGt/gTt																																																																															
AR	367	MSKCC	GRCh37	X	66766207	66766207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	16	117	0	ENST00000374690.3:c.1219C>T	p.Arg407Cys	p.R407C	ENST00000374690	NM_000044.3	407	Cgc/Tgc																																																																															
ATR	545	MSKCC	GRCh37	3	142272831	142272831	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	27	324	0	ENST00000350721.4:c.2368del	p.Cys790ValfsTer13	p.C790Vfs*13	ENST00000350721	NM_001184.3	790	Tgt/gt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73336074	73336074	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	70	370	0	ENST00000377767.4:c.2329T>C	p.Ser777Pro	p.S777P	ENST00000377767	NM_014953.3	777	Tca/Cca																																																																															
BRAF	673	MSKCC	GRCh37	7	140482926	140482927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs777474487		P-0005786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	97	499	2	ENST00000288602.6:c.1208dup	p.Ala404CysfsTer9	p.A404Cfs*9	ENST00000288602	NM_004333.4	403	cct/ccCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	23	214	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0006332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1214	26	383	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287494	33287494	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	139	298	0	ENST00000374542.5:c.1603G>T	p.Glu535Ter	p.E535*	ENST00000374542	NM_001141970.1	535	Gaa/Taa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575069	64575069	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	181	379	0	ENST00000337652.1:c.753del	p.Ile252LeufsTer34	p.I252Lfs*34	ENST00000337652	NM_130803.2	251	tcC/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008836-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			157	117	422	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256205	16256205	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	105	604	0	ENST00000375759.3:c.3475del	p.Ile1159LeufsTer28	p.I1159Lfs*28	ENST00000375759	NM_015001.2	1157	gAa/ga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242484	55242507	+	inframe_deletion	In_Frame_Del	DEL	TCTCCGAAAGCCAACAAGGAAATC	TCTCCGAAAGCCAACAAGGAAATC	-	rs121913463		P-0014117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			954	82	455	0	ENST00000275493.2:c.2254_2277del	p.Ser752_Ile759del	p.S752_I759del	ENST00000275493	NM_005228.3	752	TCTCCGAAAGCCAACAAGGAAATC/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0015825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	276	519	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28601342	28601342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	147	475	0	ENST00000241453.7:c.2090G>A	p.Gly697Asp	p.G697D	ENST00000241453	NM_004119.2	697	gGt/gAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602739	10602739	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	1030	672	0	ENST00000171111.5:c.839del	p.Phe280SerfsTer37	p.F280Sfs*37	ENST00000171111	NM_203500.1	280	tTc/tc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213947	36213947	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1244332454		P-0015825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	584	797	2	ENST00000222270.7:c.2773G>T	p.Gly925Ter	p.G925*	ENST00000222270	NM_014727.1	925	Gga/Tga																																																																															
ATRX	546	MSKCC	GRCh37	X	76889122	76889122	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	404	291	0	ENST00000373344.5:c.4888A>G	p.Thr1630Ala	p.T1630A	ENST00000373344	NM_000489.3	1630	Act/Gct																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0019459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	149	406	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241722	55241722	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1051753269		P-0019459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	198	637	2	ENST00000275493.2:c.2170G>A	p.Gly724Ser	p.G724S	ENST00000275493	NM_005228.3	724	Ggc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0019459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	171	785	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366883	40366883	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	284	814	0	ENST00000397332.2:c.314C>A	p.Ser105Tyr	p.S105Y	ENST00000397332	NM_001033082.2	105	tCc/tAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70357753	70357753	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	294	539	0	ENST00000374080.3:c.6004C>T	p.Gln2002Ter	p.Q2002*	ENST00000374080		2002	Cag/Tag																																																																															
STK40	83931	MSKCC	GRCh37	1	36820859	36820859	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	169	580	1	ENST00000373129.3:c.518A>T	p.Glu173Val	p.E173V	ENST00000373129	NM_032017.1	173	gAg/gTg																																																																															
RIT1	6016	MSKCC	GRCh37	1	155880464	155880465	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0019687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	189	654	1	ENST00000368323.3:c.88_89delinsTT	p.Gly30Phe	p.G30F	ENST00000368323	NM_006912.5	30	GGt/TTt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097629	8097630	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	44	225	0	ENST00000346208.3:c.13dup	p.Ala5GlyfsTer48	p.A5Gfs*48	ENST00000346208		4	acg/acGg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865192	57865192	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	335	984	0	ENST00000228682.2:c.2669C>A	p.Thr890Lys	p.T890K	ENST00000228682	NM_005269.2	890	aCa/aAa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120848	115120848	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	106	407	1	ENST00000257566.3:c.158C>A	p.Ala53Glu	p.A53E	ENST00000257566	NM_016569.3	53	gCg/gAg																																																																															
POLE	5426	MSKCC	GRCh37	12	133220533	133220533	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	211	689	0	ENST00000320574.5:c.4180G>C	p.Val1394Leu	p.V1394L	ENST00000320574	NM_006231.2	1394	Gtc/Ctc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73347843	73347844	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0019687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	93	355	0	ENST00000377767.4:c.1217_1218delinsTT	p.Pro406Leu	p.P406L	ENST00000377767	NM_014953.3	406	cCC/cTT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577035	7577038	+	frameshift_variant	Frame_Shift_Del	DEL	TGGG	TGGG	CC			P-0019687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	134	775	2	ENST00000269305.4:c.900_903delinsGG	p.Pro301GlyfsTer4	p.P301Gfs*4	ENST00000269305	NM_001126112.2	300	ccCCCA/ccGG																																																																															
NF1	4763	MSKCC	GRCh37	17	29657375	29657375	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs878853904		P-0019687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	213	871	2	ENST00000358273.4:c.5671C>T	p.Gln1891Ter	p.Q1891*	ENST00000358273	NM_001042492.2	1891	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600449	10600449	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs973016645		P-0019687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	377	999	1	ENST00000171111.5:c.1406A>G	p.Asn469Ser	p.N469S	ENST00000171111	NM_203500.1	469	aAt/aGt																																																																															
KDR	3791	MSKCC	GRCh37	4	55976833	55976834	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0019687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	109	753	4	ENST00000263923.4:c.1078_1079delinsAA	p.Pro360Lys	p.P360K	ENST00000263923	NM_002253.2	360	CCa/AAa																																																																															
TERT	7015	MSKCC	GRCh37	5	1264670	1264670	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1435	382	1142	0	ENST00000310581.5:c.2692G>T	p.Val898Leu	p.V898L	ENST00000310581	NM_198253.2	898	Gtg/Ttg																																																																															
APC	324	MSKCC	GRCh37	5	112174781	112174781	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	168	469	0	ENST00000257430.4:c.3490A>T	p.Ile1164Leu	p.I1164L	ENST00000257430	NM_000038.5	1164	Ata/Tta																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637367	176637367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs910345852		P-0019687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	217	710	0	ENST00000439151.2:c.1967C>T	p.Ser656Leu	p.S656L	ENST00000439151	NM_022455.4	656	tCa/tTa																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288513	33288513	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0019687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	121	388	0	ENST00000374542.5:c.1039G>T	p.Gly347Cys	p.G347C	ENST00000374542	NM_001141970.1	347	Ggc/Tgc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8492909	8492909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	315	643	0	ENST00000356435.5:c.2420G>T	p.Gly807Val	p.G807V	ENST00000356435		807	gGa/gTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528615	8528615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	225	553	0	ENST00000356435.5:c.517G>T	p.Gly173Cys	p.G173C	ENST00000356435		173	Ggt/Tgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974690	21974690	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	339	531	0	ENST00000304494.5:c.137G>C	p.Arg46Pro	p.R46P	ENST00000304494	NM_000077.4	46	cGg/cCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0020051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	59	405	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138384011	138384011	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759151757		P-0020051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	107	725	2	ENST00000289153.2:c.2539C>T	p.Arg847Cys	p.R847C	ENST00000289153	NM_006219.2	847	Cgc/Tgc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206777	36206777	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	59	791	0	ENST00000300305.3:c.735del	p.Thr246ArgfsTer8	p.T246Rfs*8	ENST00000300305		245	ccC/cc																																																																															
CDH1	999	MSKCC	GRCh37	16	68771340	68771341	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0020051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	41	372	0	ENST00000261769.5:c.25_26del	p.Ser9GlyfsTer24	p.S9Gfs*24	ENST00000261769	NM_004360.3	8	CTc/c																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913355		P-0020343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	49	586	0	ENST00000288602.6:c.1406G>T	p.Gly469Val	p.G469V	ENST00000288602	NM_004333.4	469	gGa/gTa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981775	201981776	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	212	982	0	ENST00000359651.3:c.487dup	p.Ser163LysfsTer33	p.S163Kfs*33	ENST00000359651		162	-/A																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948712	71948712	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374001069		P-0020343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	106	856	0	ENST00000298229.2:c.3424C>T	p.Arg1142Cys	p.R1142C	ENST00000298229	NM_001567.3	1142	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579359	7579360	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTC			P-0020343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	79	850	0	ENST00000269305.4:c.327_328insGAAA	p.Arg110GlufsTer40	p.R110Efs*40	ENST00000269305	NM_001126112.2	109	-/GAAA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0020971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	249	810	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112128170	112128170	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	210	719	0	ENST00000257430.4:c.673G>T	p.Glu225Ter	p.E225*	ENST00000257430	NM_000038.5	225	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927984	178927984	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	190	472	0	ENST00000263967.3:c.1262C>G	p.Pro421Arg	p.P421R	ENST00000263967	NM_006218.2	421	cCa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0021007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	66	721	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0021007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	35	548	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	43	640	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612352	1612352	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748738693		P-0021722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	155	929	1	ENST00000344749.5:c.1667G>A	p.Arg556Gln	p.R556Q	ENST00000344749	NM_001136139.2	556	cGg/cAg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519946		P-0021834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	43	672	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	61	251	3	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633565	69633565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	29	386	1	ENST00000334134.2:c.137G>A	p.Arg46His	p.R46H	ENST00000334134	NM_005247.2	46	cGc/cAc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562774	95562774	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	42	479	0	ENST00000343455.3:c.4483del	p.Ser1495HisfsTer65	p.S1495Hfs*65	ENST00000343455	NM_177438.2	1495	Tca/ca																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933190	49933190	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	29	714	0	ENST00000296474.3:c.2920A>C	p.Thr974Pro	p.T974P	ENST00000296474	NM_002447.2	974	Act/Cct																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851736	134851736	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	45	624	0	ENST00000398015.3:c.1142C>G	p.Pro381Arg	p.P381R	ENST00000398015	NM_004441.4	381	cCc/cGc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169977788	169977788	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	33	572	0	ENST00000295797.4:c.255G>C	p.Glu85Asp	p.E85D	ENST00000295797	NM_002740.5	85	gaG/gaC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	56	722	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397516896		P-0021835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	55	631	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0021835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	122	929	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443857	49443857	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	118	898	0	ENST00000301067.7:c.3514T>C	p.Cys1172Arg	p.C1172R	ENST00000301067	NM_003482.3	1172	Tgc/Cgc																																																																															
ALK	238	MSKCC	GRCh37	2	30143001	30143001	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1086	116	938	0	ENST00000389048.3:c.525T>G	p.Ser175Arg	p.S175R	ENST00000389048	NM_004304.4	175	agT/agG																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0021837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	160	476	1	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
MED12	9968	MSKCC	GRCh37	X	70342150	70342150	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	337	792	0	ENST00000374080.3:c.1202C>G	p.Pro401Arg	p.P401R	ENST00000374080		401	cCg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242477	+	protein_altering_variant	In_Frame_Del	DEL	ATTAAGAGAA	ATTAAGAGAA	C			P-0021837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	234	732	0	ENST00000275493.2:c.2238_2247delinsC	p.Glu746_Glu749delinsAsp	p.E746_E749delinsD	ENST00000275493	NM_005228.3	746	gaATTAAGAGAA/gaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0022811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	132	753	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0022811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	192	931	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482843	67482843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	154	730	0	ENST00000327367.4:c.1247C>T	p.Ser416Phe	p.S416F	ENST00000327367	NM_005902.3	416	tCc/tTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416428	49416428	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	145	762	0	ENST00000301067.7:c.16283G>C	p.Gly5428Ala	p.G5428A	ENST00000301067	NM_003482.3	5428	gGc/gCc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575047	48575056	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTTCTAGG	TTTTTCTAGG	-			P-0022811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	44	441	0	ENST00000342988.3:c.250-8_251del		p.X84_splice	ENST00000342988	NM_005359.5	84																																																																																
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	477	1208	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163317687	163317687	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	87	456	0	ENST00000271452.3:c.1083G>C	p.Lys361Asn	p.K361N	ENST00000271452	NM_145697.2	361	aaG/aaC																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910883	114910883	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0022878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	37	536	0	ENST00000543371.1:c.1001+1G>C		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																																
VHL	7428	MSKCC	GRCh37	3	10191524	10191524	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	121	702	0	ENST00000256474.2:c.517G>C	p.Glu173Gln	p.E173Q	ENST00000256474	NM_000551.3	173	Gag/Cag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0023439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	232	502	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0023439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	411	905	2	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662487	227662487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	146	450	0	ENST00000305123.5:c.968C>T	p.Ser323Phe	p.S323F	ENST00000305123	NM_005544.2	323	tCc/tTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286263	66286263	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	90	429	0	ENST00000273854.3:c.1423G>T	p.Val475Leu	p.V475L	ENST00000273854	NM_004439.5	475	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	65	443	1	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552618	18552618	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	53	289	0	ENST00000266497.5:c.2029T>G	p.Leu677Val	p.L677V	ENST00000266497		677	Tta/Gta																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554393	63554393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	36	407	1	ENST00000307078.5:c.346G>A	p.Gly116Arg	p.G116R	ENST00000307078	NM_004655.3	116	Gga/Aga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541526	187541526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	28	330	0	ENST00000441802.2:c.6214G>A	p.Glu2072Lys	p.E2072K	ENST00000441802	NM_005245.3	2072	Gaa/Aaa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199966	138199966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	21	255	0	ENST00000237289.4:c.1384C>A	p.Pro462Thr	p.P462T	ENST00000237289	NM_001270507.1	462	Ccg/Acg																																																																															
HGF	3082	MSKCC	GRCh37	7	81340795	81340795	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0023788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	61	216	0	ENST00000222390.5:c.1444+2T>C		p.X482_splice	ENST00000222390	NM_000601.4	482																																																																																
MEN1	4221	MSKCC	GRCh37	11	64577330	64577333	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0023837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	151	387	0	ENST00000337652.1:c.249_252del	p.Ile85SerfsTer33	p.I85Sfs*33	ENST00000337652	NM_130803.2	83	ctGTCT/ct																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845940	156845940	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	173	453	0	ENST00000524377.1:c.1570G>T	p.Val524Phe	p.V524F	ENST00000524377	NM_002529.3	524	Gtc/Ttc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33286806	33286806	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1443274655		P-0023837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	101	337	1	ENST00000374542.5:c.2131del	p.His711IlefsTer55	p.H711Ifs*55	ENST00000374542	NM_001141970.1	711	Cat/at																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	273	494	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0024285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	280	454	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0024285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	193	338	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68867192	68867192	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0024285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	228	385	1	ENST00000261769.5:c.2440-1G>T		p.X814_splice	ENST00000261769	NM_004360.3	814																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36212455	36212455	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	341	549	2	ENST00000222270.7:c.2206C>T	p.Gln736Ter	p.Q736*	ENST00000222270	NM_014727.1	736	Cag/Tag																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99204042	99204042	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs529481819		P-0024285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	168	251	0	ENST00000074304.5:c.2905G>A	p.Glu969Lys	p.E969K	ENST00000074304	NM_001134224.1	969	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0026308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	766	303	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs863224451		P-0026308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	47	410	0	ENST00000269305.4:c.824G>C	p.Cys275Ser	p.C275S	ENST00000269305	NM_001126112.2	275	tGt/tCt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044879	47044879	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	93	308	0	ENST00000329236.7:c.1971del	p.Ser658ValfsTer66	p.S658Vfs*66	ENST00000329236	NM_001204466.1	657	gaG/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs760043106		P-0029455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	128	689	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0029455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	100	507	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																															
RB1	5925	MSKCC	GRCh37	13	49033889	49033889	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	81	559	0	ENST00000267163.4:c.2027del	p.Leu676Ter	p.L676*	ENST00000267163	NM_000321.2	676	Tta/ta																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420203	88420203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	99	668	0	ENST00000360948.2:c.2483G>C	p.Gly828Ala	p.G828A	ENST00000360948	NM_001012338.2	828	gGg/gCg																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73774732	73774732	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	40	160	0	ENST00000254810.4:c.355A>T	p.Thr119Ser	p.T119S	ENST00000254810	NM_005324.3	119	Acc/Tcc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096138	178096138	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	35	512	0	ENST00000397062.3:c.1193A>T	p.His398Leu	p.H398L	ENST00000397062	NM_006164.4	398	cAt/cTt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198273255	198273255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	70	622	2	ENST00000335508.6:c.955G>T	p.Gly319Cys	p.G319C	ENST00000335508	NM_012433.2	319	Ggt/Tgt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660923	227660923	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	76	792	0	ENST00000305123.5:c.2532G>C	p.Lys844Asn	p.K844N	ENST00000305123	NM_005544.2	844	aaG/aaC																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662388	227662388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	78	617	0	ENST00000305123.5:c.1067C>T	p.Ala356Val	p.A356V	ENST00000305123	NM_005544.2	356	gCc/gTc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871316	35871316	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0029455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	69	440	0	ENST00000303115.3:c.537+1G>T		p.X179_splice	ENST00000303115	NM_002185.3	179																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32164726	32164726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	111	705	0	ENST00000375023.3:c.5176G>T	p.Asp1726Tyr	p.D1726Y	ENST00000375023	NM_004557.3	1726	Gac/Tac																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168689	32168689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	145	788	0	ENST00000375023.3:c.4234C>A	p.Leu1412Ile	p.L1412I	ENST00000375023	NM_004557.3	1412	Ctt/Att																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370780	55370780	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	275	425	1	ENST00000297316.4:c.82G>T	p.Gly28Cys	p.G28C	ENST00000297316	NM_022454.3	28	Ggc/Tgc																																																																															
MED12	9968	MSKCC	GRCh37	X	70355087	70355087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	152	845	0	ENST00000374080.3:c.5009C>T	p.Ser1670Phe	p.S1670F	ENST00000374080		1670	tCc/tTc																																																																															
ATRX	546	MSKCC	GRCh37	X	76907844	76907844	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0029455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	15	123	0	ENST00000373344.5:c.4318-1G>T		p.X1440_splice	ENST00000373344	NM_000489.3	1440																																																																																
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	323	777	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
RB1	5925	MSKCC	GRCh37	13	48955538	48955538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913303		P-0030551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	18	411	0	ENST00000267163.4:c.1654C>T	p.Arg552Ter	p.R552*	ENST00000267163	NM_000321.2	552	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0032261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	343	430	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0032261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	243	473	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829665	72829665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	152	647	1	ENST00000268489.5:c.6916G>A	p.Glu2306Lys	p.E2306K	ENST00000268489	NM_006885.3	2306	Gag/Aag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40757393	40757393	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0032261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	111	432	0	ENST00000373198.4:c.2904+1G>C		p.X968_splice	ENST00000373198	NM_133170.3	968																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	59	463	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	25	548	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																															
RAC1	5879	MSKCC	GRCh37	7	6426893	6426893	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519948		P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	18	480	1	ENST00000356142.4:c.86C>T	p.Pro29Leu	p.P29L	ENST00000356142	NM_018890.3	29	cCt/cTt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231724	66231724	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	52	532	0	ENST00000273854.3:c.1976C>A	p.Pro659His	p.P659H	ENST00000273854	NM_004439.5	659	cCc/cAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47143044	47143044	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	30	314	0	ENST00000409792.3:c.4919G>A	p.Trp1640Ter	p.W1640*	ENST00000409792	NM_014159.6	1640	tGg/tAg																																																																															
MAX	4149	MSKCC	GRCh37	14	65543382	65543382	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	61	475	0	ENST00000358664.4:c.296-1G>T		p.X99_splice	ENST00000358664	NM_002382.4	99																																																																																
RET	5979	MSKCC	GRCh37	10	43619211	43619211	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	41	474	1	ENST00000355710.3:c.2894A>T	p.Lys965Met	p.K965M	ENST00000355710	NM_020975.4	965	aAg/aTg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549388	21549388	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	35	494	0	ENST00000382592.4:c.2888G>T	p.Gly963Val	p.G963V	ENST00000382592	NM_014572.2	963	gGg/gTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28896427	28896427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	42	329	0	ENST00000282397.4:c.3023G>T	p.Arg1008Ile	p.R1008I	ENST00000282397	NM_002019.4	1008	aGa/aTa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562881	95562881	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	33	308	0	ENST00000343455.3:c.4376G>T	p.Gly1459Val	p.G1459V	ENST00000343455	NM_177438.2	1459	gGg/gTg																																																																															
BLM	641	MSKCC	GRCh37	15	91292626	91292626	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	29	205	0	ENST00000355112.3:c.128C>G	p.Ser43Ter	p.S43*	ENST00000355112	NM_000057.2	43	tCa/tGa																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128038152	128038152	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	46	460	0	ENST00000285398.2:c.1398G>T	p.Leu466Phe	p.L466F	ENST00000285398	NM_000122.1	466	ttG/ttT																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560791	9560791	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	36	329	0	ENST00000353224.5:c.990+1G>T		p.X330_splice	ENST00000353224	NM_177990.2	330																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106526738	106526738	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	34	300	0	ENST00000359195.3:c.3030+1G>T		p.X1010_splice	ENST00000359195	NM_002649.2	1010																																																																																
WHSC1L1	54904	MSKCC	GRCh37	8	38194987	38194987	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	50	329	0	ENST00000317025.8:c.748-2A>G		p.X250_splice	ENST00000317025	NM_023034.1	250																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139417508	139417508	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	75	843	0	ENST00000277541.6:c.536T>G	p.Val179Gly	p.V179G	ENST00000277541	NM_017617.3	179	gTc/gGc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53231065	53231065	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	84	587	0	ENST00000375401.3:c.1837G>C	p.Glu613Gln	p.E613Q	ENST00000375401	NM_004187.3	613	Gag/Cag																																																																															
AR	367	MSKCC	GRCh37	X	66765372	66765372	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	49	613	0	ENST00000374690.3:c.384G>C	p.Glu128Asp	p.E128D	ENST00000374690	NM_000044.3	128	gaG/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782329		P-0032351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	391	575	0	ENST00000269305.4:c.746G>C	p.Arg249Thr	p.R249T	ENST00000269305	NM_001126112.2	249	aGg/aCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444707	49444707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	315	634	0	ENST00000301067.7:c.2759C>A	p.Ser920Tyr	p.S920Y	ENST00000301067	NM_003482.3	920	tCt/tAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274087	10274087	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs764780280		P-0032351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	198	551	0	ENST00000330684.3:c.182C>A	p.Ala61Glu	p.A61E	ENST00000330684	NM_001134407.1	61	gCg/gAg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210830	2210830	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	111	360	0	ENST00000398665.3:c.1327C>T	p.Gln443Ter	p.Q443*	ENST00000398665	NM_032482.2	443	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602646	10602646	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	258	689	0	ENST00000171111.5:c.932A>C	p.His311Pro	p.H311P	ENST00000171111	NM_203500.1	311	cAc/cCc																																																																															
MET	4233	MSKCC	GRCh37	7	116417482	116417482	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	101	372	0	ENST00000397752.3:c.3299A>G	p.Asn1100Ser	p.N1100S	ENST00000397752	NM_000245.2	1100	aAt/aGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971182	21971206	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	ACTCGGGCGCTGCCCATCATCATGA	ACTCGGGCGCTGCCCATCATCATGA	-			P-0032351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	179	370	0	ENST00000304494.5:c.152_176del	p.Val51GlyfsTer87	p.V51Gfs*87	ENST00000304494	NM_000077.4	51	gTCATGATGATGGGCAGCGCCCGAGTg/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0033307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	104	1014	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	23	429	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0033307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	120	762	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0034124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	15	447	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28929495		P-0034124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	106	470	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0034124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	90	392	1	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082215	16082215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	40	611	0	ENST00000281043.3:c.29C>A	p.Pro10Gln	p.P10Q	ENST00000281043	NM_005378.4	10	cCg/cAg																																																																															
RB1	5925	MSKCC	GRCh37	13	48941724	48941724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	55	299	0	ENST00000267163.4:c.1034C>A	p.Thr345Asn	p.T345N	ENST00000267163	NM_000321.2	345	aCt/aAt																																																																															
RB1	5925	MSKCC	GRCh37	13	48941732	48941732	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	55	301	0	ENST00000267163.4:c.1042del	p.Ile348Ter	p.I348*	ENST00000267163	NM_000321.2	348	Ata/ta																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81929443	81929443	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	43	477	0	ENST00000359376.3:c.1105del	p.Val369SerfsTer33	p.V369Sfs*33	ENST00000359376	NM_002661.3	368	ccG/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0034329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	63	407	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
ATR	545	MSKCC	GRCh37	3	142259876	142259876	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0034329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	45	520	0	ENST00000350721.4:c.3451G>T	p.Ala1151Ser	p.A1151S	ENST00000350721	NM_001184.3	1151	Gcc/Tcc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223892	53223892	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	53	993	0	ENST00000375401.3:c.3467del	p.Lys1156ArgfsTer108	p.K1156Rfs*108	ENST00000375401	NM_004187.3	1156	aAg/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	279	517	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0034332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	361	777	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894365		P-0034332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	289	540	0	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	229	250	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0034562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	113	428	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
AR	367	MSKCC	GRCh37	X	66765239	66765239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	61	322	0	ENST00000374690.3:c.251C>A	p.Pro84His	p.P84H	ENST00000374690	NM_000044.3	84	cCc/cAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045500	47045500	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	109	543	0	ENST00000329236.7:c.2233G>T	p.Glu745Ter	p.E745*	ENST00000329236	NM_001204466.1	745	Gaa/Taa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212570070	212570070	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs745408040		P-0034562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	100	445	2	ENST00000342788.4:c.1171G>T	p.Val391Phe	p.V391F	ENST00000342788	NM_005235.2	391	Gtc/Ttc																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30309750	30309750	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	91	538	0	ENST00000307677.4:c.272G>C	p.Arg91Thr	p.R91T	ENST00000307677	NM_138578.1	91	aGg/aCg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87339196	87339196	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	73	452	0	ENST00000277120.3:c.778A>T	p.Ser260Cys	p.S260C	ENST00000277120		260	Agt/Tgt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411750	63411750	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1349239165		P-0034562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	131	692	0	ENST00000330258.3:c.1417G>C	p.Asp473His	p.D473H	ENST00000330258	NM_152424.3	473	Gac/Cac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593519	48593519	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	33	382	0	ENST00000342988.3:c.1270G>C	p.Asp424His	p.D424H	ENST00000342988	NM_005359.5	424	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7576926	7576927	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GC	GC	AT			P-0034606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	98	664	0	ENST00000269305.4:c.920-1_920delinsAT		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
FAT1	2195	MSKCC	GRCh37	4	187558028	187558028	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1288182768		P-0034606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	39	444	0	ENST00000441802.2:c.3683T>C	p.Ile1228Thr	p.I1228T	ENST00000441802	NM_005245.3	1228	aTt/aCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	301	458	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0034882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	273	670	1	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
SDHD	6392	MSKCC	GRCh37	11	111959594	111959594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	123	752	0	ENST00000375549.3:c.173G>A	p.Gly58Asp	p.G58D	ENST00000375549	NM_003002.3	58	gGc/gAc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112915532	112915532	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G	rs774939392		P-0034882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	86	626	0	ENST00000351677.2:c.931A>G	p.Met311Val	p.M311V	ENST00000351677	NM_002834.3	311	Atg/Gtg																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805762	46805762	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	295	649	0	ENST00000290295.7:c.194C>A	p.Pro65Gln	p.P65Q	ENST00000290295	NM_006361.5	65	cCa/cAa																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139810996	139810996	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	327	703	0	ENST00000247668.2:c.607C>T	p.Gln203Ter	p.Q203*	ENST00000247668	NM_021138.3	203	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs28934571		P-0035893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	457	663	0	ENST00000269305.4:c.747G>C	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agC																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011106	12011106	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	190	434	0	ENST00000353533.5:c.514-1G>T		p.X172_splice	ENST00000353533	NM_003010.3	172																																																																																
FLCN	201163	MSKCC	GRCh37	17	17118561	17118562	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0035893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	75	579	0	ENST00000285071.4:c.1369dup	p.Asp457GlyfsTer29	p.D457Gfs*29	ENST00000285071	NM_144997.5	457	gac/gGac																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2223311	2223311	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	495	718	1	ENST00000398665.3:c.3422C>A	p.Thr1141Lys	p.T1141K	ENST00000398665	NM_032482.2	1141	aCa/aAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162626	47162626	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1389881036		P-0035893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	297	502	0	ENST00000409792.3:c.3500G>A	p.Gly1167Glu	p.G1167E	ENST00000409792	NM_014159.6	1167	gGg/gAg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588164	67588164	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	138	291	0	ENST00000274335.5:c.994G>T	p.Glu332Ter	p.E332*	ENST00000274335		332	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574000	7574000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	271	631	1	ENST00000269305.4:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000269305	NM_001126112.2	343	Gag/Tag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099403	157099429	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAGCAGCAACAG	CAGCAGCAGCAGCAGCAGCAGCAACAG	-	rs910569810		P-0036114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	60	224	0	ENST00000346085.5:c.360_386del	p.Gln123_Gln131del	p.Q123_Q131del	ENST00000346085	NM_020732.3	114	CAGCAGCAGCAGCAGCAGCAGCAACAG/-																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539951	187539951	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777631605		P-0036114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	169	412	0	ENST00000441802.2:c.7789C>T	p.Arg2597Ter	p.R2597*	ENST00000441802	NM_005245.3	2597	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881982	37881982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	202	638	0	ENST00000269571.5:c.2748G>A	p.Met916Ile	p.M916I	ENST00000269571		916	atG/atA																																																																															
RECQL	5965	MSKCC	GRCh37	12	21643155	21643155	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	147	568	0	ENST00000421138.2:c.372G>C	p.Gln124His	p.Q124H	ENST00000421138		124	caG/caC																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476287	88476287	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	187	579	0	ENST00000360948.2:c.1845G>C	p.Met615Ile	p.M615I	ENST00000360948	NM_001012338.2	615	atG/atC																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783970	50783970	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0036114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	207	540	0	ENST00000398568.2:c.361A>T	p.Lys121Ter	p.K121*	ENST00000398568	NM_001042412.1	121	Aaa/Taa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117677944	117677944	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	159	498	0	ENST00000368508.3:c.3989A>T	p.Asn1330Ile	p.N1330I	ENST00000368508	NM_002944.2	1330	aAt/aTt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401093	139401093	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0036114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	194	654	0	ENST00000277541.6:c.3902-2A>T		p.X1301_splice	ENST00000277541	NM_017617.3	1301																																																																																
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	36	519	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62292712	62292712	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	G			P-0036935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	14	498	0	ENST00000482936.1:c.164C>G	p.Thr55Ser	p.T55S	ENST00000482936		55	aCc/aGc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170002274	170002274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	28	141	0	ENST00000295797.4:c.1093G>T	p.Ala365Ser	p.A365S	ENST00000295797	NM_002740.5	365	Gca/Tca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391268	139391268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	14	909	0	ENST00000277541.6:c.6923G>A	p.Cys2308Tyr	p.C2308Y	ENST00000277541	NM_017617.3	2308	tGc/tAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398286	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	596	403	1	ENST00000256078.4:c.33_34delinsCT	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	11	gcTGgt/gcCTgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178947852	178947852	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	67	319	0	ENST00000263967.3:c.2727C>A	p.Phe909Leu	p.F909L	ENST00000263967	NM_006218.2	909	ttC/ttA																																																																															
NUF2	83540	MSKCC	GRCh37	1	163306609	163306609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	110	368	1	ENST00000271452.3:c.406G>A	p.Glu136Lys	p.E136K	ENST00000271452	NM_145697.2	136	Gaa/Aaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100406	8100406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	132	641	0	ENST00000346208.3:c.380C>A	p.Pro127Gln	p.P127Q	ENST00000346208		127	cCg/cAg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337693	73337693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	74	220	0	ENST00000377767.4:c.2023G>T	p.Ala675Ser	p.A675S	ENST00000377767	NM_014953.3	675	Gca/Tca																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43700216	43700216	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	92	467	0	ENST00000382044.4:c.5671G>C	p.Glu1891Gln	p.E1891Q	ENST00000382044	NM_001141980.1	1891	Gag/Cag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15971285	15971285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	112	430	0	ENST00000268712.3:c.4664C>T	p.Thr1555Ile	p.T1555I	ENST00000268712	NM_006311.3	1555	aCt/aTt																																																																															
ALK	238	MSKCC	GRCh37	2	29443658	29443658	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	250	509	0	ENST00000389048.3:c.3559C>A	p.Leu1187Met	p.L1187M	ENST00000389048	NM_004304.4	1187	Ctg/Atg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155243	55155243	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	72	465	0	ENST00000257290.5:c.2842G>C	p.Glu948Gln	p.E948Q	ENST00000257290	NM_006206.4	948	Gag/Cag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217125	66217125	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	80	398	0	ENST00000273854.3:c.2490G>T	p.Glu830Asp	p.E830D	ENST00000273854	NM_004439.5	830	gaG/gaT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549444	187549444	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	112	459	1	ENST00000441802.2:c.4674C>A	p.His1558Gln	p.H1558Q	ENST00000441802	NM_005245.3	1558	caC/caA																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518776	176518776	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	103	610	0	ENST00000292408.4:c.694A>T	p.Ser232Cys	p.S232C	ENST00000292408	NM_213647.1	232	Agc/Tgc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120864	94120864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	67	432	0	ENST00000369303.4:c.187G>A	p.Glu63Lys	p.E63K	ENST00000369303	NM_004440.3	63	Gag/Aag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69002888	69002888	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	134	286	0	ENST00000288368.4:c.2188G>C	p.Glu730Gln	p.E730Q	ENST00000288368	NM_024870.2	730	Gag/Cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	92	702	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221320	1221320	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587776656		P-0037047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	86	824	0	ENST00000326873.7:c.843del	p.Leu282SerfsTer5	p.L282Sfs*5	ENST00000326873	NM_000455.4	281	ccG/cc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610247	10610247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	98	1151	0	ENST00000171111.5:c.463G>T	p.Val155Phe	p.V155F	ENST00000171111	NM_203500.1	155	Gtc/Ttc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241966	72241966	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	38	472	0	ENST00000357731.5:c.424T>C	p.Tyr142His	p.Y142H	ENST00000357731	NM_173808.2	142	Tat/Cat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0037064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	228	491	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TET1	80312	MSKCC	GRCh37	10	70446351	70446351	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	52	578	0	ENST00000373644.4:c.5291A>T	p.Glu1764Val	p.E1764V	ENST00000373644	NM_030625.2	1764	gAg/gTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106155884	106155884	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	37	474	0	ENST00000380013.4:c.785G>T	p.Cys262Phe	p.C262F	ENST00000380013	NM_001127208.2	262	tGt/tTt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	309	642	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	643	647	2	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097632	8097633	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	109	245	0	ENST00000346208.3:c.16dup	p.Asp6GlyfsTer47	p.D6Gfs*47	ENST00000346208		5	gcg/gcGg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827862	72827862	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	354	742	0	ENST00000268489.5:c.8719G>C	p.Asp2907His	p.D2907H	ENST00000268489	NM_006885.3	2907	Gac/Cac																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119981	70119981	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1451445875		P-0037099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	311	308	0	ENST00000245479.2:c.983C>T	p.Pro328Leu	p.P328L	ENST00000245479	NM_000346.3	328	cCg/cTg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93964453	93964453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	283	693	0	ENST00000369303.4:c.2444C>T	p.Ser815Leu	p.S815L	ENST00000369303	NM_004440.3	815	tCa/tTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0037157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	891	428	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
MED12	9968	MSKCC	GRCh37	X	70343021	70343021	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs875989806		P-0037157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	47	531	0	ENST00000374080.3:c.1562G>A	p.Arg521His	p.R521H	ENST00000374080		521	cGt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211045	36211045	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	169	732	0	ENST00000222270.7:c.796T>C	p.Trp266Arg	p.W266R	ENST00000222270	NM_014727.1	266	Tgg/Cgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55260475	55260475	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs397517136		P-0037157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	1040	485	0	ENST00000275493.2:c.2642T>C	p.Met881Thr	p.M881T	ENST00000275493	NM_005228.3	881	aTg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0037252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	141	392	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
CDK12	51755	MSKCC	GRCh37	17	37619225	37619317	+	inframe_deletion	In_Frame_Del	DEL	TCTGTCAGTCCCTATAGCAGGAGACGGTCGTCCAGCTACGAAAGAAGTGGCTCTTACAGCGGGCGATCGCCCAGTCCCTATGGTCGAAGGCGG	TCTGTCAGTCCCTATAGCAGGAGACGGTCGTCCAGCTACGAAAGAAGTGGCTCTTACAGCGGGCGATCGCCCAGTCCCTATGGTCGAAGGCGG	-			P-0037252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	134	369	0	ENST00000447079.4:c.903_995del	p.Val302_Ser332del	p.V302_S332del	ENST00000447079	NM_015083.1	301	TCTGTCAGTCCCTATAGCAGGAGACGGTCGTCCAGCTACGAAAGAAGTGGCTCTTACAGCGGGCGATCGCCCAGTCCCTATGGTCGAAGGCGG/-																																																																															
ALK	238	MSKCC	GRCh37	2	29456486	29456486	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	202	542	0	ENST00000389048.3:c.2432T>A	p.Val811Glu	p.V811E	ENST00000389048	NM_004304.4	811	gTg/gAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025921	48025921	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1301670893		P-0037252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	76	343	0	ENST00000234420.5:c.799C>G	p.Pro267Ala	p.P267A	ENST00000234420	NM_000179.2	267	Cca/Gca																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175813	24175813	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	150	445	0	ENST00000263121.7:c.1041C>G	p.Asp347Glu	p.D347E	ENST00000263121	NM_003073.3	347	gaC/gaG																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935494	13935494	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	85	272	0	ENST00000405192.2:c.1362T>A	p.Tyr454Ter	p.Y454*	ENST00000405192	NM_001163147.1	454	taT/taA																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918566	44918566	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	154	454	0	ENST00000377967.4:c.1049G>T	p.Gly350Val	p.G350V	ENST00000377967	NM_021140.2	350	gGc/gTc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678508	88678508	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs183806623		P-0037275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	131	514	0	ENST00000360948.2:c.1028G>T	p.Arg343Leu	p.R343L	ENST00000360948	NM_001012338.2	343	cGg/cTg																																																																															
B2M	567	MSKCC	GRCh37	15	45007690	45007690	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1435502075		P-0037275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	34	453	0	ENST00000558401.1:c.137A>G	p.Tyr46Cys	p.Y46C	ENST00000558401	NM_004048.2	46	tAt/tGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29684293	29684294	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	322	514	0	ENST00000358273.4:c.7877dup	p.Val2627GlyfsTer7	p.V2627Gfs*7	ENST00000358273	NM_001042492.2	2626	ctg/cTtg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144647	55144647	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	157	403	0	ENST00000257290.5:c.2121C>G	p.Ile707Met	p.I707M	ENST00000257290	NM_006206.4	707	atC/atG																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540815	187540815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	45	397	0	ENST00000441802.2:c.6925G>T	p.Asp2309Tyr	p.D2309Y	ENST00000441802	NM_005245.3	2309	Gat/Tat																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588190	67588190	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0037275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	76	276	0	ENST00000274335.5:c.1019+1G>T		p.X340_splice	ENST00000274335		340																																																																																
FLT4	2324	MSKCC	GRCh37	5	180040062	180040062	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376188634		P-0037275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	405	773	1	ENST00000261937.6:c.3380G>A	p.Arg1127Gln	p.R1127Q	ENST00000261937	NM_182925.4	1127	cGg/cAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032545	47032555	+	frameshift_variant	Frame_Shift_Del	DEL	TCGCACGGCGT	TCGCACGGCGT	C			P-0037275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	169	587	0	ENST00000329236.7:c.220_230delinsC	p.Ser74ArgfsTer8	p.S74Rfs*8	ENST00000329236	NM_001204466.1	74	TCGCACGGCGTg/Cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	129	516	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390943	89390943	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	27	442	0	ENST00000336596.2:c.1009A>T	p.Asn337Tyr	p.N337Y	ENST00000336596	NM_005233.5	337	Aac/Tac																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	111	410	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0037340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	54	343	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0037340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	86	333	1	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546725	9546725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1210292896		P-0037340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	40	343	0	ENST00000353224.5:c.1297C>T	p.Arg433Trp	p.R433W	ENST00000353224	NM_177990.2	433	Cgg/Tgg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742480	17742480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	21	546	0	ENST00000250003.3:c.662G>A	p.Arg221Gln	p.R221Q	ENST00000250003	NM_002478.4	221	cGg/cAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119900	70119943	+	frameshift_variant	Frame_Shift_Del	DEL	ACGGCCACCCGGGGGTGCCGGCCACGCACGGCCAGGTCACCTAC	ACGGCCACCCGGGGGTGCCGGCCACGCACGGCCAGGTCACCTAC	-			P-0037340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	60	529	0	ENST00000245479.2:c.906_949del	p.His303GlnfsTer260	p.H303Qfs*260	ENST00000245479	NM_000346.3	301	aACGGCCACCCGGGGGTGCCGGCCACGCACGGCCAGGTCACCTAC/a																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5206828	5206828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1326058191		P-0037340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	94	662	0	ENST00000357368.4:c.5804C>T	p.Ala1935Val	p.A1935V	ENST00000357368	NM_002850.3	1935	gCg/gTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812249	212812249	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	133	384	0	ENST00000342788.4:c.327A>C	p.Lys109Asn	p.K109N	ENST00000342788	NM_005235.2	109	aaA/aaC																																																																															
CUL3	8452	MSKCC	GRCh37	2	225365173	225365173	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1180155404		P-0037340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	132	375	1	ENST00000264414.4:c.1517G>A	p.Arg506Gln	p.R506Q	ENST00000264414	NM_003590.4	506	cGg/cAg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800201	32800205	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCT	CAGCT	-			P-0037340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	61	404	0	ENST00000374899.4:c.1177_1181del	p.Ser393TrpfsTer88	p.S393Wfs*88	ENST00000374899	NM_018833.2	393	AGCTGt/t																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450301	50450301	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770551610		P-0037340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	84	547	1	ENST00000331340.3:c.485G>A	p.Arg162Gln	p.R162Q	ENST00000331340	NM_006060.4	162	cGg/cAg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800211	32800211	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	69	386	0	ENST00000374899.4:c.1171A>C	p.Met391Leu	p.M391L	ENST00000374899	NM_018833.2	391	Atg/Ctg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0037356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	7	408	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0037376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	384	446	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0037376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	601	566	0	ENST00000397752.3:c.3028+1G>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
TSC2	7249	MSKCC	GRCh37	16	2122859	2122859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	339	355	0	ENST00000219476.3:c.2230C>T	p.Pro744Ser	p.P744S	ENST00000219476	NM_000548.3	744	Cca/Tca																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933712	36933712	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	398	472	0	ENST00000361632.4:c.1687A>C	p.Thr563Pro	p.T563P	ENST00000361632		563	Acc/Ccc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112544	115112546	+	inframe_deletion	In_Frame_Del	DEL	GTG	GTG	-			P-0037376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	155	413	0	ENST00000257566.3:c.1194_1196del	p.Thr399del	p.T399del	ENST00000257566	NM_016569.3	398	acCACg/acg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30325693	30325693	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	54	146	0	ENST00000322652.5:c.1891C>G	p.Gln631Glu	p.Q631E	ENST00000322652	NM_015355.2	631	Caa/Gaa																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205068	128205068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	403	449	0	ENST00000341105.2:c.373C>T	p.Pro125Ser	p.P125S	ENST00000341105	NM_032638.4	125	Cca/Tca																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158767	26158767	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	160	456	0	ENST00000289316.2:c.370A>G	p.Ser124Gly	p.S124G	ENST00000289316	NM_138720.2	124	Agt/Ggt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	13	549	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0037419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	24	786	3	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	206	458	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981167	201981167	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1194	106	697	0	ENST00000359651.3:c.246G>C	p.Lys82Asn	p.K82N	ENST00000359651		82	aaG/aaC																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981170	201981170	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1206	103	704	0	ENST00000359651.3:c.249C>G	p.Asn83Lys	p.N83K	ENST00000359651		83	aaC/aaG																																																																															
ATM	472	MSKCC	GRCh37	11	108206595	108206595	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	207	302	0	ENST00000278616.4:c.8175T>G	p.Asp2725Glu	p.D2725E	ENST00000278616	NM_000051.3	2725	gaT/gaG																																																																															
MGA	23269	MSKCC	GRCh37	15	42000315	42000316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	62	477	0	ENST00000219905.7:c.2337dup	p.Val780CysfsTer3	p.V780Cfs*3	ENST00000219905	NM_001164273.1	778	-/T																																																																															
MGA	23269	MSKCC	GRCh37	15	42042331	42042331	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	111	438	0	ENST00000219905.7:c.6526A>T	p.Lys2176Ter	p.K2176*	ENST00000219905	NM_001164273.1	2176	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577553	7577553	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs730882006		P-0037452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	24	586	0	ENST00000269305.4:c.728T>C	p.Met243Thr	p.M243T	ENST00000269305	NM_001126112.2	243	aTg/aCg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276245	15276245	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1159412147		P-0037452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	137	608	1	ENST00000263388.2:c.5749G>A	p.Ala1917Thr	p.A1917T	ENST00000263388	NM_000435.2	1917	Gca/Aca																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149495402	149495402	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	204	717	0	ENST00000261799.4:c.3245C>A	p.Pro1082Gln	p.P1082Q	ENST00000261799	NM_002609.3	1082	cCg/cAg																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137540379	137540384	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CCTGAG	CCTGAG	-			P-0037452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	40	273	0	ENST00000367739.4:c.81_85+1del		p.X27_splice	ENST00000367739	NM_000416.2	27																																																																																
CARD11	84433	MSKCC	GRCh37	7	2985558	2985558	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	93	433	0	ENST00000396946.4:c.253C>T	p.Gln85Ter	p.Q85*	ENST00000396946	NM_032415.4	85	Caa/Taa																																																																															
MGA	23269	MSKCC	GRCh37	15	42000319	42000319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	65	489	0	ENST00000219905.7:c.2338G>T	p.Val780Phe	p.V780F	ENST00000219905	NM_001164273.1	780	Gtt/Ttt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	127	603	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0037475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	49	496	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472559	88472559	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	80	583	0	ENST00000360948.2:c.1996G>T	p.Gly666Cys	p.G666C	ENST00000360948	NM_001012338.2	666	Ggt/Tgt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609373	81609373	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	149	525	1	ENST00000298171.2:c.971A>T	p.Gln324Leu	p.Q324L	ENST00000298171	NM_000369.2	324	cAg/cTg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217645	7217645	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	85	586	1	ENST00000380728.2:c.282A>T	p.Leu94Phe	p.L94F	ENST00000380728		94	ttA/ttT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549697	187549697	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	173	566	0	ENST00000441802.2:c.4544A>T	p.Tyr1515Phe	p.Y1515F	ENST00000441802	NM_005245.3	1515	tAt/tTt																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128321943	128321943	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	244	556	0	ENST00000265960.3:c.817C>A	p.Leu273Met	p.L273M	ENST00000265960	NM_001006617.1	273	Ctg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0037491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	255	527	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
SMO	6608	MSKCC	GRCh37	7	128843243	128843243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1173715127		P-0037491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	252	542	0	ENST00000249373.3:c.350G>A	p.Arg117His	p.R117H	ENST00000249373	NM_005631.4	117	cGc/cAc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625457	69625457	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	265	500	0	ENST00000334134.2:c.336C>A	p.Ser112Arg	p.S112R	ENST00000334134	NM_005247.2	112	agC/agA																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573830	64573830	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0037556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	184	603	0	ENST00000337652.1:c.938C>G	p.Ser313Ter	p.S313*	ENST00000337652	NM_130803.2	313	tCa/tGa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220451	1220453	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-			P-0037556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	197	751	0	ENST00000326873.7:c.549_551del	p.Leu184del	p.L184del	ENST00000326873	NM_000455.4	182	CTG/-																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600531	10600531	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0037556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	202	526	0	ENST00000171111.5:c.1326-2A>T		p.X442_splice	ENST00000171111	NM_203500.1	442																																																																																
SDHA	6389	MSKCC	GRCh37	5	233660	233660	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	108	191	0	ENST00000264932.6:c.964C>G	p.Gln322Glu	p.Q322E	ENST00000264932	NM_004168.2	322	Caa/Gaa																																																																															
TAP1	6890	MSKCC	GRCh37	6	32820905	32820905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	275	838	0	ENST00000354258.4:c.689G>A	p.Gly230Glu	p.G230E	ENST00000354258	NM_000593.5	230	gGa/gAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140487374	140487374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	182	642	0	ENST00000288602.6:c.1151G>C	p.Arg384Thr	p.R384T	ENST00000288602	NM_004333.4	384	aGa/aCa																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317479	1317479	+	downstream_gene_variant	3'Flank	SNP	G	G	T			P-0037556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	306	783	0				ENST00000381566																																																																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	130	578	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0037605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	70	404	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0037605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	96	362	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	89	398	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																															
RAD52	5893	MSKCC	GRCh37	12	1039289	1039289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11571421		P-0037605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	158	589	1	ENST00000358495.3:c.208C>T	p.Arg70Trp	p.R70W	ENST00000358495	NM_134424.2	70	Cgg/Tgg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411276	63411276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	480	385	1	ENST00000330258.3:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000330258	NM_152424.3	631	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174814	112174814	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	88	313	0	ENST00000257430.4:c.3523C>T	p.Gln1175Ter	p.Q1175*	ENST00000257430	NM_000038.5	1175	Cag/Tag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43769854	43769854	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0037605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	178	654	0	ENST00000382044.4:c.892A>T	p.Lys298Ter	p.K298*	ENST00000382044	NM_001141980.1	298	Aag/Tag																																																																															
ERG	2078	MSKCC	GRCh37	21	39755524	39755524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	59	540	0	ENST00000288319.7:c.1241A>T	p.Asp414Val	p.D414V	ENST00000288319	NM_182918.3	414	gAc/gTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	74	435	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560382	95560382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	149	582	0	ENST00000343455.3:c.5207G>T	p.Arg1736Leu	p.R1736L	ENST00000343455	NM_177438.2	1736	cGg/cTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70348505	70348505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	185	421	0	ENST00000374080.3:c.3412C>T	p.Arg1138Trp	p.R1138W	ENST00000374080		1138	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577535	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0037642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	153	886	1	ENST00000269305.4:c.746_747del	p.Arg249ThrfsTer14	p.R249Tfs*14	ENST00000269305	NM_001126112.2	249	aGG/a																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602595	10602595	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	200	904	4	ENST00000171111.5:c.983T>A	p.Ile328Asn	p.I328N	ENST00000171111	NM_203500.1	328	aTc/aAc																																																																															
TET2	54790	MSKCC	GRCh37	4	106156936	106156936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	91	474	0	ENST00000380013.4:c.1837G>T	p.Gly613Trp	p.G613W	ENST00000380013	NM_001127208.2	613	Ggg/Tgg																																																																															
ATRX	546	MSKCC	GRCh37	X	76938499	76938501	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0037643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	109	735	0	ENST00000373344.5:c.2247_2249del	p.Ser750del	p.S750del	ENST00000373344	NM_000489.3	749	tcTTCa/tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0037643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	199	945	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157469896	157469896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	41	760	0	ENST00000346085.5:c.2690G>A	p.Gly897Glu	p.G897E	ENST00000346085	NM_020732.3	897	gGa/gAa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455090	50455090	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	51	323	0	ENST00000331340.3:c.637C>T	p.Arg213Ter	p.R213*	ENST00000331340	NM_006060.4	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs786201838		P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	146	607	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226021	53226021	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781785252		P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	47	414	0	ENST00000375401.3:c.2828G>A	p.Arg943Gln	p.R943Q	ENST00000375401	NM_004187.3	943	cGa/cAa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972854	25972854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1005506744		P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	67	542	0	ENST00000435504.4:c.1571C>T	p.Ser524Leu	p.S524L	ENST00000435504		524	tCg/tTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562533	95562533	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	49	339	0	ENST00000343455.3:c.4724G>T	p.Gly1575Val	p.G1575V	ENST00000343455	NM_177438.2	1575	gGg/gTg																																																																															
IDH2	3418	MSKCC	GRCh37	15	90645531	90645531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	12	50	0	ENST00000330062.3:c.92C>T	p.Ser31Leu	p.S31L	ENST00000330062	NM_002168.2	31	tCg/tTg																																																																															
RET	5979	MSKCC	GRCh37	10	43622047	43622047	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	73	397	0	ENST00000355710.3:c.3064A>T	p.Thr1022Ser	p.T1022S	ENST00000355710	NM_020975.4	1022	Act/Tct																																																																															
RAB35	11021	MSKCC	GRCh37	12	120535120	120535120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	283	559	0	ENST00000229340.5:c.535C>T	p.Gln179Ter	p.Q179*	ENST00000229340	NM_006861.6	179	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600438	10600438	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	129	651	0	ENST00000171111.5:c.1417del	p.Tyr473MetfsTer27	p.Y473Mfs*27	ENST00000171111	NM_203500.1	473	Tat/at																																																																															
IDH1	3417	MSKCC	GRCh37	2	209103898	209103898	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	34	420	0	ENST00000345146.2:c.1051G>C	p.Glu351Gln	p.E351Q	ENST00000345146	NM_005896.2	351	Gag/Cag																																																																															
TP63	8626	MSKCC	GRCh37	3	189582204	189582204	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	29	287	0	ENST00000264731.3:c.763G>C	p.Glu255Gln	p.E255Q	ENST00000264731	NM_003722.4	255	Gag/Cag																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876296	35876296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	153	549	0	ENST00000303115.3:c.1088G>T	p.Arg363Ile	p.R363I	ENST00000303115	NM_002185.3	363	aGa/aTa																																																																															
SMO	6608	MSKCC	GRCh37	7	128852024	128852024	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	118	754	0	ENST00000249373.3:c.2096G>T	p.Ser699Ile	p.S699I	ENST00000249373	NM_005631.4	699	aGt/aTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140534663	140534663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	36	331	0	ENST00000288602.6:c.250G>A	p.Glu84Lys	p.E84K	ENST00000288602	NM_004333.4	84	Gaa/Aaa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123195692	123195692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	37	220	0	ENST00000218089.9:c.1606C>A	p.His536Asn	p.H536N	ENST00000218089	NM_001042749.1	536	Cat/Aat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0037652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	63	461	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0037652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	49	839	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858941	57858941	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754019701		P-0037652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	27	673	0	ENST00000228682.2:c.437C>T	p.Ser146Leu	p.S146L	ENST00000228682	NM_005269.2	146	tCg/tTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949201	71949201	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	21	840	0	ENST00000298229.2:c.3668A>T	p.Asp1223Val	p.D1223V	ENST00000298229	NM_001567.3	1223	gAc/gTc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434916	110434916	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs868077540		P-0037652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	15	910	0	ENST00000375856.3:c.3485C>A	p.Ser1162Tyr	p.S1162Y	ENST00000375856	NM_003749.2	1162	tCc/tAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435563	56435563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	11	731	0	ENST00000407977.2:c.1574G>A	p.Ser525Asn	p.S525N	ENST00000407977		525	aGt/aAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039407	47039408	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0037652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	18	344	1	ENST00000329236.7:c.799_800delinsTT	p.Gly267Phe	p.G267F	ENST00000329236	NM_001204466.1	267	GGc/TTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	107	515	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0037692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	25	402	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151876985	151876985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	81	383	1	ENST00000262189.6:c.7376C>T	p.Pro2459Leu	p.P2459L	ENST00000262189	NM_170606.2	2459	cCa/cTa																																																																															
ATM	472	MSKCC	GRCh37	11	108213982	108213982	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	91	385	0	ENST00000278616.4:c.8302G>T	p.Glu2768Ter	p.E2768*	ENST00000278616	NM_000051.3	2768	Gaa/Taa																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52724333	52724333	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	117	526	0	ENST00000322088.6:c.1465A>T	p.Met489Leu	p.M489L	ENST00000322088	NM_014225.5	489	Atg/Ttg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281942	39281942	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	55	377	0	ENST00000402219.2:c.533A>G	p.Gln178Arg	p.Q178R	ENST00000402219	NM_005633.3	178	cAa/cGa																																																																															
MET	4233	MSKCC	GRCh37	7	116339963	116339964	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAAGAATAATCAGGTTCTGTTCCATAAACTCTGGATTGCATTCCTACATGGA			P-0037692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	31	400	0	ENST00000397752.3:c.827_879dup	p.Met294GlnfsTer3	p.M294Qfs*3	ENST00000397752	NM_000245.2	275	-/ACAAGAATAATCAGGTTCTGTTCCATAAACTCTGGATTGCATTCCTACATGGA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448517	49448517	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763644658		P-0037925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	174	672	1	ENST00000301067.7:c.194G>A	p.Arg65His	p.R65H	ENST00000301067	NM_003482.3	65	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	225	874	1	ENST00000269305.4:c.526del	p.Cys176AlafsTer71	p.C176Afs*71	ENST00000269305	NM_001126112.2	176	Tgc/gc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264414	30264414	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1281747941		P-0037925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	207	581	0	ENST00000322652.5:c.149G>A	p.Gly50Asp	p.G50D	ENST00000322652	NM_015355.2	50	gGc/gAc																																																																															
RARA	5914	MSKCC	GRCh37	17	38508263	38508283	+	inframe_deletion	In_Frame_Del	DEL	GTGCGCAAAGCGCACCAGGAA	GTGCGCAAAGCGCACCAGGAA	-			P-0037925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	80	647	0	ENST00000254066.5:c.571_591del	p.Val191_Glu197del	p.V191_E197del	ENST00000254066	NM_000964.3	191	GTGCGCAAAGCGCACCAGGAA/-																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945083	151945083	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	40	819	0	ENST00000262189.6:c.2436G>T	p.Met812Ile	p.M812I	ENST00000262189	NM_170606.2	812	atG/atT																																																																															
TET1	80312	MSKCC	GRCh37	10	70332337	70332337	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761821309		P-0037959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	90	582	1	ENST00000373644.4:c.242G>A	p.Arg81His	p.R81H	ENST00000373644	NM_030625.2	81	cGc/cAc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123182858	123182858	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	38	222	1	ENST00000218089.9:c.823C>T	p.Gln275Ter	p.Q275*	ENST00000218089	NM_001042749.1	275	Cag/Tag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046361	180046361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	44	636	0	ENST00000261937.6:c.2653G>A	p.Ala885Thr	p.A885T	ENST00000261937	NM_182925.4	885	Gcc/Acc																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025803	1025803	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0037959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	140	486	0	ENST00000358495.3:c.725+2T>A		p.X242_splice	ENST00000358495	NM_134424.2	242																																																																																
ALK	238	MSKCC	GRCh37	2	29498073	29498073	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	146	671	0	ENST00000389048.3:c.1933C>A	p.Leu645Met	p.L645M	ENST00000389048	NM_004304.4	645	Ctg/Atg																																																																															
ATRX	546	MSKCC	GRCh37	X	76939169	76939169	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	72	678	0	ENST00000373344.5:c.1579G>C	p.Asp527His	p.D527H	ENST00000373344	NM_000489.3	527	Gac/Cac																																																																															
ATRX	546	MSKCC	GRCh37	X	76939995	76939995	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	65	733	0	ENST00000373344.5:c.753G>C	p.Lys251Asn	p.K251N	ENST00000373344	NM_000489.3	251	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0038018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	150	696	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115919	8115920	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	49	416	0	ENST00000346208.3:c.1266dup	p.His423AlafsTer84	p.H423Afs*84	ENST00000346208		422	atg/atGg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244370	41244370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	70	629	0	ENST00000357654.3:c.3178G>A	p.Glu1060Lys	p.E1060K	ENST00000357654	NM_007294.3	1060	Gaa/Aaa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244913	41244913	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80357251		P-0038018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	57	549	0	ENST00000357654.3:c.2635G>A	p.Glu879Lys	p.E879K	ENST00000357654	NM_007294.3	879	Gaa/Aaa																																																																															
RYBP	23429	MSKCC	GRCh37	3	72428469	72428469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	68	482	0	ENST00000477973.2:c.533G>A	p.Glu179Lys	p.E179K	ENST00000477973	NM_012234.5	179	Gag/Aag																																																																															
BCL6	604	MSKCC	GRCh37	3	187447586	187447586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	42	622	0	ENST00000232014.4:c.607G>A	p.Val203Ile	p.V203I	ENST00000232014	NM_001130845.1	203	Gtc/Atc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534341	187534341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	40	475	0	ENST00000441802.2:c.9385C>A	p.Pro3129Thr	p.P3129T	ENST00000441802	NM_005245.3	3129	Cct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	79	276	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602659	10602659	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	120	669	0	ENST00000171111.5:c.919G>T	p.Glu307Ter	p.E307*	ENST00000171111	NM_203500.1	307	Gag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1218483	1218483	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs775595174		P-0038020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	82	462	1	ENST00000326873.7:c.358G>T	p.Glu120Ter	p.E120*	ENST00000326873	NM_000455.4	120	Gaa/Taa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646201	3646201	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	98	705	0	ENST00000294008.3:c.1877G>C	p.Ser626Thr	p.S626T	ENST00000294008	NM_032444.2	626	aGc/aCc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858141	9858141	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	34	529	0	ENST00000330684.3:c.3260A>T	p.Lys1087Ile	p.K1087I	ENST00000330684	NM_001134407.1	1087	aAa/aTa																																																																															
ERG	2078	MSKCC	GRCh37	21	39764322	39764322	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	173	544	0	ENST00000288319.7:c.790G>T	p.Gly264Cys	p.G264C	ENST00000288319	NM_182918.3	264	Ggc/Tgc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47155495	47155495	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0038020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	56	216	0	ENST00000409792.3:c.4587-1G>T		p.X1529_splice	ENST00000409792	NM_014159.6	1529																																																																																
IL7R	3575	MSKCC	GRCh37	5	35876105	35876105	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	39	350	0	ENST00000303115.3:c.897T>A	p.Asn299Lys	p.N299K	ENST00000303115	NM_002185.3	299	aaT/aaA																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502640	149502640	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	70	401	0	ENST00000261799.4:c.2148del	p.Tyr716Ter	p.Y716*	ENST00000261799	NM_002609.3	716	taC/ta																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872461	35872461	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	94	423	1	ENST00000216797.5:c.442del	p.Leu148TyrfsTer16	p.L148Yfs*16	ENST00000216797	NM_020529.2	148	Cta/ta																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599874	10599874	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	204	651	0	ENST00000171111.5:c.1702G>T	p.Val568Phe	p.V568F	ENST00000171111	NM_203500.1	568	Gtc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	228	559	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
NBN	4683	MSKCC	GRCh37	8	90955585	90955585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	60	333	0	ENST00000265433.3:c.2080C>T	p.Pro694Ser	p.P694S	ENST00000265433	NM_002485.4	694	Cct/Tct																																																																															
MGA	23269	MSKCC	GRCh37	15	42028423	42028423	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	117	328	0	ENST00000219905.7:c.3961A>G	p.Thr1321Ala	p.T1321A	ENST00000219905	NM_001164273.1	1321	Act/Gct																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37884226	37884226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	46	656	0	ENST00000269571.5:c.3697C>A	p.Pro1233Thr	p.P1233T	ENST00000269571		1233	Cca/Aca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435889	56435889	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	137	494	0	ENST00000407977.2:c.1248G>T	p.Trp416Cys	p.W416C	ENST00000407977		416	tgG/tgT																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313511	30313511	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	133	480	0	ENST00000262643.3:c.1110+1G>T		p.X370_splice	ENST00000262643	NM_001238.2	370																																																																																
ASXL2	55252	MSKCC	GRCh37	2	25964971	25964971	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	139	444	1	ENST00000435504.4:c.4235G>T	p.Gly1412Val	p.G1412V	ENST00000435504		1412	gGc/gTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111659	56111659	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	70	202	0	ENST00000399503.3:c.259T>G	p.Ser87Ala	p.S87A	ENST00000399503	NM_005921.1	87	Tcc/Gcc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168985	32168985	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	204	792	0	ENST00000375023.3:c.4048A>C	p.Lys1350Gln	p.K1350Q	ENST00000375023	NM_004557.3	1350	Aag/Cag																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271274	38271274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	178	771	0	ENST00000425967.3:c.2434C>T	p.Pro812Ser	p.P812S	ENST00000425967	NM_001174067.1	812	Ccc/Tcc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117878894	117878894	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	77	265	0	ENST00000297338.2:c.75G>T	p.Lys25Asn	p.K25N	ENST00000297338	NM_006265.2	25	aaG/aaT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0039031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	283	601	2	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026643	6026643	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs63750947		P-0039031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1405	106	1137	3	ENST00000265849.7:c.1753C>A	p.Leu585Ile	p.L585I	ENST00000265849	NM_000535.5	585	Ctt/Att																																																																															
TP53	7157	MSKCC	GRCh37	17	7576901	7576901	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	46	586	0	ENST00000269305.4:c.945del	p.Gln317SerfsTer28	p.Q317Sfs*28	ENST00000269305	NM_001126112.2	315	tcT/tc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104715	69104715	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	90	519	0	ENST00000288368.4:c.4559G>C	p.Arg1520Thr	p.R1520T	ENST00000288368	NM_024870.2	1520	aGg/aCg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227821	53227821	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0039031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	94	364	0	ENST00000375401.3:c.2369-2A>C		p.X790_splice	ENST00000375401	NM_004187.3	790																																																																																
TP53BP1	7158	MSKCC	GRCh37	15	43712526	43712526	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767934572		P-0039219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	107	631	1	ENST00000382044.4:c.4658C>T	p.Ser1553Leu	p.S1553L	ENST00000382044	NM_001141980.1	1553	tCg/tTg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156834557	156834557	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	257	746	0	ENST00000524377.1:c.325G>T	p.Asp109Tyr	p.D109Y	ENST00000524377	NM_002529.3	109	Gat/Tat																																																																															
MGA	23269	MSKCC	GRCh37	15	42005533	42005533	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	220	488	0	ENST00000219905.7:c.3270del	p.Gly1092GlufsTer41	p.G1092Efs*41	ENST00000219905	NM_001164273.1	1090	gTt/gt																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233459	69233459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2144	142	354	0	ENST00000462284.1:c.1324G>A	p.Glu442Lys	p.E442K	ENST00000462284	NM_002392.5	442	Gaa/Aaa																																																																															
ERF	2077	MSKCC	GRCh37	19	42754505	42754505	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1174086151		P-0039257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	80	709	0	ENST00000222329.4:c.235G>A	p.Asp79Asn	p.D79N	ENST00000222329	NM_006494.2	79	Gac/Aac																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155259	55155259	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	65	470	0	ENST00000257290.5:c.2858T>G	p.Leu953Arg	p.L953R	ENST00000257290	NM_006206.4	953	cTg/cGg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156837936	156837936	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141629165		P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	78	812	1	ENST00000524377.1:c.469C>T	p.Arg157Cys	p.R157C	ENST00000524377	NM_002529.3	157	Cgc/Tgc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123239501	123239501	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	140	842	0	ENST00000358487.5:c.2336A>T	p.Tyr779Phe	p.Y779F	ENST00000358487	NM_000141.4	779	tAt/tTt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94204831	94204831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	47	500	4	ENST00000323929.3:c.754G>T	p.Ala252Ser	p.A252S	ENST00000323929	NM_005591.3	252	Gct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	173	498	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133249236	133249236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	80	699	1	ENST00000320574.5:c.1663G>T	p.Asp555Tyr	p.D555Y	ENST00000320574	NM_006231.2	555	Gat/Tat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913438	32913438	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	57	585	0	ENST00000380152.3:c.4946A>G	p.Lys1649Arg	p.K1649R	ENST00000380152		1649	aAa/aGa																																																																															
MGA	23269	MSKCC	GRCh37	15	42059447	42059448	+	missense_variant	Missense_Mutation	DNP	CG	CG	TC			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	118	445	2	ENST00000219905.7:c.9167_9168delinsTC	p.Ser3056Phe	p.S3056F	ENST00000219905	NM_001164273.1	3056	tCG/tTC																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992319	72992319	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs748909927		P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	191	875	1	ENST00000268489.5:c.1726G>T	p.Gly576Cys	p.G576C	ENST00000268489	NM_006885.3	576	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	181	772	2	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	103	650	2	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248530	212248530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	40	648	1	ENST00000342788.4:c.3737G>T	p.Ser1246Ile	p.S1246I	ENST00000342788	NM_005235.2	1246	aGc/aTc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678777	52678777	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	91	365	0	ENST00000394830.3:c.842A>G	p.Tyr281Cys	p.Y281C	ENST00000394830	NM_018313.4	281	tAt/tGt																																																																															
TP63	8626	MSKCC	GRCh37	3	189455600	189455600	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	77	600	0	ENST00000264731.3:c.134A>G	p.Gln45Arg	p.Q45R	ENST00000264731	NM_003722.4	45	cAg/cGg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127397	55127397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	49	702	0	ENST00000257290.5:c.185C>T	p.Ser62Phe	p.S62F	ENST00000257290	NM_006206.4	62	tCt/tTt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144543	55144543	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	56	499	0	ENST00000257290.5:c.2017A>G	p.Ile673Val	p.I673V	ENST00000257290	NM_006206.4	673	Atc/Gtc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542365	187542365	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	31	444	0	ENST00000441802.2:c.5375T>A	p.Leu1792Gln	p.L1792Q	ENST00000441802	NM_005245.3	1792	cTg/cAg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93955088	93955088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	31	448	1	ENST00000369303.4:c.2810T>C	p.Met937Thr	p.M937T	ENST00000369303	NM_004440.3	937	aTg/aCg																																																																															
BTK	695	MSKCC	GRCh37	X	100630137	100630137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	179	512	1	ENST00000308731.7:c.136C>A	p.Arg46Ser	p.R46S	ENST00000308731	NM_000061.2	46	Cgt/Agt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220370	1220370	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0039409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	94	531	0	ENST00000326873.7:c.465-2A>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10610247	10610247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	110	809	0	ENST00000171111.5:c.463G>T	p.Val155Phe	p.V155F	ENST00000171111	NM_203500.1	155	Gtc/Ttc																																																																															
ARAF	369	MSKCC	GRCh37	X	47424679	47424679	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775921012		P-0039409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	123	639	0	ENST00000377045.4:c.487G>A	p.Gly163Arg	p.G163R	ENST00000377045	NM_001654.4	163	Gga/Aga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597395	10597395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	139	728	0	ENST00000171111.5:c.1808G>A	p.Gly603Glu	p.G603E	ENST00000171111	NM_203500.1	603	gGg/gAg																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732533	74732533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	30	192	0	ENST00000359995.5:c.376C>T	p.Arg126Cys	p.R126C	ENST00000359995	NM_001195427.1	126	Cgc/Tgc																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17387662	17387662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	106	638	1	ENST00000359435.4:c.730G>T	p.Asp244Tyr	p.D244Y	ENST00000359435	NM_001033549.1	244	Gac/Tac																																																																															
TET2	54790	MSKCC	GRCh37	4	106190792	106190792	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	84	466	0	ENST00000380013.4:c.4070A>T	p.Glu1357Val	p.E1357V	ENST00000380013	NM_001127208.2	1357	gAg/gTg																																																																															
ARAF	369	MSKCC	GRCh37	X	47424293	47424293	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	76	584	0	ENST00000377045.4:c.298A>T	p.Asn100Tyr	p.N100Y	ENST00000377045	NM_001654.4	100	Aat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	33	305	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0039465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	12	301	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0039465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	56	550	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141502	11141502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	56	635	0	ENST00000344626.4:c.3479G>T	p.Gly1160Val	p.G1160V	ENST00000344626	NM_003072.3	1160	gGg/gTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0039465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	65	339	0				ENST00000310581	NM_198253.2																																																																																	
RPS6KA4	8986	MSKCC	GRCh37	11	64127733	64127733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	51	693	0	ENST00000334205.4:c.226G>A	p.Ala76Thr	p.A76T	ENST00000334205	NM_003942.2	76	Gcc/Acc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857470	9857470	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	26	409	0	ENST00000330684.3:c.3931A>G	p.Ile1311Val	p.I1311V	ENST00000330684	NM_001134407.1	1311	Ata/Gta																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4101073	4101073	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs756402608		P-0039465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	19	371	0	ENST00000262948.5:c.649G>T	p.Gly217Cys	p.G217C	ENST00000262948	NM_030662.3	217	Ggc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210740	5210741	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0039465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	61	664	1	ENST00000357368.4:c.5310_5311del	p.Asn1771GlnfsTer94	p.N1771Qfs*94	ENST00000357368	NM_002850.3	1770	gaGAac/gaac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249139	55249139	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	48	602	0	ENST00000275493.2:c.2437T>C	p.Tyr813His	p.Y813H	ENST00000275493	NM_005228.3	813	Tac/Cac																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410048	63410048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	44	548	0	ENST00000330258.3:c.3119C>A	p.Ala1040Asp	p.A1040D	ENST00000330258	NM_152424.3	1040	gCc/gAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	231	409	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs886039484		P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	441	704	0	ENST00000269305.4:c.643A>C	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	Agt/Cgt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857311	9857311	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1245573153		P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	154	568	0	ENST00000330684.3:c.4090G>A	p.Asp1364Asn	p.D1364N	ENST00000330684	NM_001134407.1	1364	Gat/Aat																																																																															
RIT1	6016	MSKCC	GRCh37	1	155880256	155880256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	282	383	0	ENST00000368323.3:c.148C>T	p.His50Tyr	p.H50Y	ENST00000368323	NM_006912.5	50	Cat/Tat																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422160	81422160	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1276734165		P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	256	496	0	ENST00000298171.2:c.136C>T	p.Arg46Cys	p.R46C	ENST00000298171	NM_000369.2	46	Cgc/Tgc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031883	10031883	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	149	639	0	ENST00000330684.3:c.940C>G	p.Pro314Ala	p.P314A	ENST00000330684	NM_001134407.1	314	Ccc/Gcc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448333	56448342	+	frameshift_variant	Frame_Shift_Del	DEL	CTGATGAATC	CTGATGAATC	-			P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	472	783	0	ENST00000407977.2:c.305_314del	p.Gly102AlafsTer53	p.G102Afs*53	ENST00000407977		102	gGATTCATCAGc/gc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5273491	5273491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	425	792	0	ENST00000357368.4:c.341G>A	p.Gly114Glu	p.G114E	ENST00000357368	NM_002850.3	114	gGg/gAg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753087	42753087	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	75	754	0	ENST00000222329.4:c.1177G>T	p.Glu393Ter	p.E393*	ENST00000222329	NM_006494.2	393	Gag/Tag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31511162	31511162	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	265	659	0	ENST00000344624.3:c.1412C>G	p.Thr471Arg	p.T471R	ENST00000344624		471	aCg/aGg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141566108	141566108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1458970957		P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	473	564	0	ENST00000220592.5:c.1156G>A	p.Ala386Thr	p.A386T	ENST00000220592	NM_012154.3	386	Gca/Aca																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921442	39921442	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	283	598	0	ENST00000378444.4:c.4378A>G	p.Lys1460Glu	p.K1460E	ENST00000378444	NM_001123385.1	1460	Aag/Gag																																																																															
ATRX	546	MSKCC	GRCh37	X	76940461	76940461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	244	482	1	ENST00000373344.5:c.632G>A	p.Arg211His	p.R211H	ENST00000373344	NM_000489.3	211	cGt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0039531-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			595	224	719	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0039531-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			832	28	953	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0039531-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			628	170	679	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17124926	17124926	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039531-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			538	92	650	0	ENST00000285071.4:c.796G>T	p.Gly266Cys	p.G266C	ENST00000285071	NM_144997.5	266	Ggc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210381	36210381	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039531-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			722	79	732	0	ENST00000222270.7:c.374G>T	p.Gly125Val	p.G125V	ENST00000222270	NM_014727.1	125	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	78	860	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162336	47162336	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	34	438	0	ENST00000409792.3:c.3790C>T	p.Gln1264Ter	p.Q1264*	ENST00000409792	NM_014159.6	1264	Caa/Taa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289947	15289947	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779780504		P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	103	1116	1	ENST00000263388.2:c.3607G>A	p.Glu1203Lys	p.E1203K	ENST00000263388	NM_000435.2	1203	Gag/Aag																																																																															
ALK	238	MSKCC	GRCh37	2	29551347	29551347	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs372472978		P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	57	696	0	ENST00000389048.3:c.1283G>A	p.Gly428Glu	p.G428E	ENST00000389048	NM_004304.4	428	gGa/gAa																																																																															
RAC1	5879	MSKCC	GRCh37	7	6414397	6414397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	35	259	0	ENST00000356142.4:c.31G>A	p.Asp11Asn	p.D11N	ENST00000356142	NM_018890.3	11	Gac/Aac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600470	10600470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	107	810	0	ENST00000171111.5:c.1385G>A	p.Gly462Glu	p.G462E	ENST00000171111	NM_203500.1	462	gGg/gAg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40456575	40456575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs988135840		P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	131	897	2	ENST00000345506.4:c.1285C>T	p.Arg429Trp	p.R429W	ENST00000345506	NM_003152.3	429	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446025	49446025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	62	1235	1	ENST00000301067.7:c.1441G>A	p.Glu481Lys	p.E481K	ENST00000301067	NM_003482.3	481	Gag/Aag																																																																															
DICER1	23405	MSKCC	GRCh37	14	95584006	95584006	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	57	474	0	ENST00000343455.3:c.1462C>T	p.Gln488Ter	p.Q488*	ENST00000343455	NM_177438.2	488	Cag/Tag																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78865611	78865611	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	62	563	0	ENST00000306801.3:c.2075A>G	p.Tyr692Cys	p.Y692C	ENST00000306801	NM_020761.2	692	tAc/tGc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5211602	5211602	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	60	506	0	ENST00000357368.4:c.5233A>T	p.Arg1745Trp	p.R1745W	ENST00000357368	NM_002850.3	1745	Agg/Tgg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355413	15355413	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	69	835	0	ENST00000263377.2:c.2212-2A>T		p.X738_splice	ENST00000263377	NM_058243.2	738																																																																																
IDH1	3417	MSKCC	GRCh37	2	209104668	209104668	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	77	607	0	ENST00000345146.2:c.910G>C	p.Glu304Gln	p.E304Q	ENST00000345146	NM_005896.2	304	Gaa/Caa																																																																															
EP300	2033	MSKCC	GRCh37	22	41573499	41573499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	88	946	0	ENST00000263253.7:c.5784G>A	p.Met1928Ile	p.M1928I	ENST00000263253	NM_001429.3	1928	atG/atA																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965385	68965385	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	76	831	0	ENST00000288368.4:c.997A>G	p.Thr333Ala	p.T333A	ENST00000288368	NM_024870.2	333	Aca/Gca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913240		P-0039801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	38	659	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180471	94180471	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	41	676	0	ENST00000323929.3:c.1697C>G	p.Thr566Ser	p.T566S	ENST00000323929	NM_005591.3	566	aCc/aGc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38147994	38147994	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0039801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	49	790	0	ENST00000317025.8:c.3117G>C	p.Lys1039Asn	p.K1039N	ENST00000317025	NM_023034.1	1039	aaG/aaC																																																																															
NBN	4683	MSKCC	GRCh37	8	90965837	90965837	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	30	402	0	ENST00000265433.3:c.1480C>T	p.Gln494Ter	p.Q494*	ENST00000265433	NM_002485.4	494	Caa/Taa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034417	47034417	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0039801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	38	492	1	ENST00000329236.7:c.272-1G>A		p.X91_splice	ENST00000329236	NM_001204466.1	91																																																																																
MED12	9968	MSKCC	GRCh37	X	70361191	70361191	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	39	599	0	ENST00000374080.3:c.6382del	p.Gln2128AsnfsTer91	p.Q2128Nfs*91	ENST00000374080		2127	Ccc/cc																																																																															
CASP8	841	MSKCC	GRCh37	2	202141632	202141632	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	88	469	2	ENST00000358485.4:c.920G>T	p.Arg307Leu	p.R307L	ENST00000358485	NM_001080125.1	307	cGg/cTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1223048	1223048	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0039869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	182	1084	0	ENST00000326873.7:c.985A>T	p.Lys329Ter	p.K329*	ENST00000326873	NM_000455.4	329	Aag/Tag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061517	38061517	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771653601		P-0039869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	46	276	0	ENST00000250448.2:c.472G>A	p.Asp158Asn	p.D158N	ENST00000250448	NM_004496.3	158	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0039869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	289	885	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
PTEN	5728	MSKCC	GRCh37	10	89685271	89685271	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0039869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	102	210	2	ENST00000371953.3:c.170del	p.Leu57TrpfsTer42	p.L57Wfs*42	ENST00000371953	NM_000314.4	56	Ttt/tt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032573	47032573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	257	903	2	ENST00000329236.7:c.248G>A	p.Arg83Gln	p.R83Q	ENST00000329236	NM_001204466.1	83	cGg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845261	151845261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	88	519	0	ENST00000262189.6:c.13751G>A	p.Arg4584Gln	p.R4584Q	ENST00000262189	NM_170606.2	4584	cGg/cAg																																																																															
RB1	5925	MSKCC	GRCh37	13	48951157	48951157	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	156	389	0	ENST00000267163.4:c.1321del	p.Ile441LeufsTer16	p.I441Lfs*16	ENST00000267163	NM_000321.2	440	gAa/ga																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99189292	99189292	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768206909		P-0039869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	113	582	0	ENST00000074304.5:c.2548C>T	p.Arg850Cys	p.R850C	ENST00000074304	NM_001134224.1	850	Cgc/Tgc																																																																															
KDR	3791	MSKCC	GRCh37	4	55964430	55964430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	320	515	0	ENST00000263923.4:c.2383G>C	p.Gly795Arg	p.G795R	ENST00000263923	NM_002253.2	795	Ggg/Cgg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030315	180030315	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	147	1092	2	ENST00000261937.6:c.3969G>T	p.Glu1323Asp	p.E1323D	ENST00000261937	NM_182925.4	1323	gaG/gaT																																																																															
PMS2	5395	MSKCC	GRCh37	7	6027000	6027000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	272	779	0	ENST00000265849.7:c.1396G>T	p.Gly466Cys	p.G466C	ENST00000265849	NM_000535.5	466	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0039950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	625	665	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45657040	45657040	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	143	500	0	ENST00000407780.3:c.116G>C	p.Cys39Ser	p.C39S	ENST00000407780	NM_001283052.1	39	tGc/tCc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439894	52439894	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	148	508	0	ENST00000460680.1:c.818C>G	p.Thr273Ser	p.T273S	ENST00000460680	NM_004656.3	273	aCc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057520008		P-0039968-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			682	296	651	0	ENST00000269305.4:c.613T>C	p.Tyr205His	p.Y205H	ENST00000269305	NM_001126112.2	205	Tat/Cat																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244952	41244952	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41286300		P-0039968-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			665	55	571	0	ENST00000357654.3:c.2596C>T	p.Arg866Cys	p.R866C	ENST00000357654	NM_007294.3	866	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057743	27057756	+	frameshift_variant	Frame_Shift_Del	DEL	CCTACTCCCAGCAA	CCTACTCCCAGCAA	-			P-0039968-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			834	426	792	0	ENST00000324856.7:c.1453_1466del	p.Tyr485ThrfsTer133	p.Y485Tfs*133	ENST00000324856	NM_006015.4	484	cCCTACTCCCAGCAA/c																																																																															
LMO1	4004	MSKCC	GRCh37	11	8251918	8251918	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039968-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			848	65	752	1	ENST00000335790.3:c.159C>A	p.Cys53Ter	p.C53*	ENST00000335790	NM_002315.2	53	tgC/tgA																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343064	118343064	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039968-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			421	24	273	0	ENST00000534358.1:c.1190G>C	p.Arg397Thr	p.R397T	ENST00000534358	NM_005933.3	397	aGa/aCa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343120	118343120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039968-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			510	28	346	0	ENST00000534358.1:c.1246G>A	p.Ala416Thr	p.A416T	ENST00000534358	NM_005933.3	416	Gct/Act																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223742	36223742	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751646243		P-0039968-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1358	103	858	0	ENST00000222270.7:c.6292G>A	p.Ala2098Thr	p.A2098T	ENST00000222270	NM_014727.1	2098	Gct/Act																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557206	187557206	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039968-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			494	59	449	0	ENST00000441802.2:c.4156G>C	p.Gly1386Arg	p.G1386R	ENST00000441802	NM_005245.3	1386	Ggc/Cgc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871297	35871297	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039968-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			395	72	330	0	ENST00000303115.3:c.520del	p.Asp174MetfsTer8	p.D174Mfs*8	ENST00000303115	NM_002185.3	173	aaG/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	128	297	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278049	18278049	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs372272045		P-0039983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	46	620	0	ENST00000222254.8:c.1669G>T	p.Asp557Tyr	p.D557Y	ENST00000222254	NM_005027.3	557	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs878854073		P-0039983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	43	446	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48584533	48584533	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	34	331	0	ENST00000342988.3:c.706G>T	p.Gly236Ter	p.G236*	ENST00000342988	NM_005359.5	236	Gga/Tga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974839	15974839	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	29	337	0	ENST00000268712.3:c.4036G>T	p.Glu1346Ter	p.E1346*	ENST00000268712	NM_006311.3	1346	Gaa/Taa																																																																															
ALK	238	MSKCC	GRCh37	2	29449878	29449878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	72	843	0	ENST00000389048.3:c.2977G>A	p.Asp993Asn	p.D993N	ENST00000389048	NM_004304.4	993	Gac/Aac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971161	21971161	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs756750256		P-0039983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	33	383	0	ENST00000304494.5:c.197A>C	p.His66Pro	p.H66P	ENST00000304494	NM_000077.4	66	cAc/cCc																																																																															
BTK	695	MSKCC	GRCh37	X	100611935	100611935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	30	447	0	ENST00000308731.7:c.1186G>A	p.Glu396Lys	p.E396K	ENST00000308731	NM_000061.2	396	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0039998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	75	712	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
PARP1	142	MSKCC	GRCh37	1	226595555	226595555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	49	368	0	ENST00000366794.5:c.76G>A	p.Glu26Lys	p.E26K	ENST00000366794	NM_001618.3	26	Gag/Aag																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912276	29912276	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0039998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	53	739	0	ENST00000376809.5:c.896-1G>C		p.X299_splice	ENST00000376809	NM_002116.7	299																																																																																
ETV6	2120	MSKCC	GRCh37	12	11992229	11992229	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	19	263	0	ENST00000396373.4:c.319C>A	p.Pro107Thr	p.P107T	ENST00000396373	NM_001987.4	107	Cct/Act																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435962	49435962	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	74	682	0	ENST00000301067.7:c.6019G>T	p.Glu2007Ter	p.E2007*	ENST00000301067	NM_003482.3	2007	Gag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152027753	152027753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	61	561	0	ENST00000262189.6:c.322C>T	p.Leu108Phe	p.L108F	ENST00000262189	NM_170606.2	108	Ctt/Ttt																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	49	304	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057520000		P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	190	773	1	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056209	26056211	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-	rs779842031		P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	12	377	0	ENST00000343677.2:c.446_448del	p.Lys149del	p.K149del	ENST00000343677	NM_005319.3	149	aAGAgc/agc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845366	151845366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	21	477	1	ENST00000262189.6:c.13646G>A	p.Arg4549His	p.R4549H	ENST00000262189	NM_170606.2	4549	cGc/cAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039294	47039294	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	287	380	0	ENST00000329236.7:c.686A>T	p.Asn229Ile	p.N229I	ENST00000329236	NM_001204466.1	229	aAc/aTc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066641	94066641	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs772199348		P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	66	406	0	ENST00000369303.4:c.1118G>T	p.Ser373Ile	p.S373I	ENST00000369303	NM_004440.3	373	aGt/aTt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528505	157528505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	22	516	0	ENST00000346085.5:c.6230C>T	p.Ser2077Leu	p.S2077L	ENST00000346085	NM_020732.3	2077	tCg/tTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023211	27023212	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	212	147	0	ENST00000324856.7:c.320_321dup	p.Gly108ArgfsTer7	p.G108Rfs*7	ENST00000324856	NM_006015.4	106	aac/aaCGc																																																																															
CBL	867	MSKCC	GRCh37	11	119077186	119077186	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750572996		P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1253	677	505	0	ENST00000264033.4:c.59C>T	p.Ser20Leu	p.S20L	ENST00000264033	NM_005188.3	20	tCg/tTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425053	49425053	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs745381478		P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	212	753	0	ENST00000301067.7:c.13435G>T	p.Gly4479Trp	p.G4479W	ENST00000301067	NM_003482.3	4479	Ggg/Tgg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538280	9538280	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	31	389	1	ENST00000353224.5:c.1718C>A	p.Ser573Tyr	p.S573Y	ENST00000353224	NM_177990.2	573	tCc/tAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713407	40713407	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	176	679	0	ENST00000373198.4:c.4108C>G	p.Arg1370Gly	p.R1370G	ENST00000373198	NM_133170.3	1370	Cgc/Ggc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46256394	46256394	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	20	365	0	ENST00000371998.3:c.622C>G	p.Leu208Val	p.L208V	ENST00000371998		208	Ctg/Gtg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47142948	47142948	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			15	48	316	0	ENST00000409792.3:c.5015G>T	p.Gly1672Val	p.G1672V	ENST00000409792	NM_014159.6	1672	gGa/gTa																																																																															
ATR	545	MSKCC	GRCh37	3	142275353	142275353	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	20	355	0	ENST00000350721.4:c.1950G>T	p.Glu650Asp	p.E650D	ENST00000350721	NM_001184.3	650	gaG/gaT																																																																															
KDR	3791	MSKCC	GRCh37	4	55953926	55953926	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	29	264	1	ENST00000263923.4:c.3511-1G>T		p.X1171_splice	ENST00000263923	NM_002253.2	1171																																																																																
INPP4B	8821	MSKCC	GRCh37	4	143130108	143130108	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	56	400	0	ENST00000262992.4:c.908A>T	p.His303Leu	p.H303L	ENST00000262992	NM_001101669.1	303	cAc/cTc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321369	1321369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	73	467	0	ENST00000381566.1:c.386G>T	p.Trp129Leu	p.W129L	ENST00000381566		129	tGg/tTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207077	1207077	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	260	1156	1	ENST00000326873.7:c.169del	p.Glu57LysfsTer7	p.E57Kfs*7	ENST00000326873	NM_000455.4	55	ctG/ct																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602746	10602746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	289	1083	0	ENST00000171111.5:c.832C>T	p.Pro278Ser	p.P278S	ENST00000171111	NM_203500.1	278	Ccg/Tcg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95592924	95592924	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755944755		P-0040095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	27	327	0	ENST00000343455.3:c.896C>T	p.Ser299Leu	p.S299L	ENST00000343455	NM_177438.2	299	tCg/tTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11301620	11301620	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	151	809	0	ENST00000361445.4:c.1531G>C	p.Val511Leu	p.V511L	ENST00000361445	NM_004958.3	511	Gtg/Ctg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153252014	153252014	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	88	390	0	ENST00000281708.4:c.992A>G	p.Asp331Gly	p.D331G	ENST00000281708	NM_033632.3	331	gAt/gGt																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279500	123279500	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	49	530	0	ENST00000358487.5:c.932T>C	p.Val311Ala	p.V311A	ENST00000358487	NM_000141.4	311	gTt/gCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0040267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	106	352	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81888130	81888130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	93	534	0	ENST00000359376.3:c.275A>C	p.Glu92Ala	p.E92A	ENST00000359376	NM_002661.3	92	gAa/gCa																																																																															
STK11	6794	MSKCC	GRCh37	19	1218500	1218500	+	splice_donor_variant	Splice_Site	SNP	A	A	G	rs1131690951		P-0040267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	81	440	0	ENST00000326873.7:c.374+1A>G		p.X125_splice	ENST00000326873	NM_000455.4	125																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10610227	10610227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	171	870	0	ENST00000171111.5:c.483G>T	p.Met161Ile	p.M161I	ENST00000171111	NM_203500.1	161	atG/atT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223277	36223277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1391	187	1094	0	ENST00000222270.7:c.5827C>T	p.Pro1943Ser	p.P1943S	ENST00000222270	NM_014727.1	1943	Cct/Tct																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52595839	52595839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	73	492	0	ENST00000394830.3:c.4076G>A	p.Arg1359His	p.R1359H	ENST00000394830	NM_018313.4	1359	cGc/cAc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72864554	72864554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0040267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	16	269	0	ENST00000325599.8:c.883G>T	p.Val295Phe	p.V295F	ENST00000325599	NM_018130.2	295	Gtt/Ttt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038879	12038879	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	41	217	0	ENST00000396373.4:c.1172A>C	p.Tyr391Ser	p.Y391S	ENST00000396373	NM_001987.4	391	tAt/tCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	38	291	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57474021	57474021	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	49	272	0	ENST00000371085.3:c.238G>T	p.Ala80Ser	p.A80S	ENST00000371085	NM_000516.4	80	Gca/Tca																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713853	30713853	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	65	517	1	ENST00000359013.4:c.1253G>T	p.Cys418Phe	p.C418F	ENST00000359013	NM_001024847.2	418	tGc/tTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058719	180058719	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770143594		P-0040332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	53	787	0	ENST00000261937.6:c.118G>A	p.Val40Ile	p.V40I	ENST00000261937	NM_182925.4	40	Gtc/Atc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412530	63412530	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	44	566	0	ENST00000330258.3:c.637C>T	p.Gln213Ter	p.Q213*	ENST00000330258	NM_152424.3	213	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	806	289	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59793361	59793361	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	51	376	0	ENST00000259008.2:c.2443C>T	p.Gln815Ter	p.Q815*	ENST00000259008	NM_032043.2	815	Cag/Tag																																																																															
AR	367	MSKCC	GRCh37	X	66766199	66766199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	40	324	0	ENST00000374690.3:c.1211C>T	p.Ala404Val	p.A404V	ENST00000374690	NM_000044.3	404	gCg/gTg																																																																															
ATM	472	MSKCC	GRCh37	11	108206581	108206581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	102	208	0	ENST00000278616.4:c.8161G>A	p.Asp2721Asn	p.D2721N	ENST00000278616	NM_000051.3	2721	Gac/Aac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9984914	9984914	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	93	390	0	ENST00000330684.3:c.1051A>G	p.Thr351Ala	p.T351A	ENST00000330684	NM_001134407.1	351	Act/Gct																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622057	1622057	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	175	545	0	ENST00000344749.5:c.818G>T	p.Arg273Leu	p.R273L	ENST00000344749	NM_001136139.2	273	cGt/cTt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1940259	1940259	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	50	233	0	ENST00000382895.3:c.1756G>T	p.Ala586Ser	p.A586S	ENST00000382895	NM_133330.2	586	Gca/Tca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974718	21974725	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCCCCC	GCGCCCCC	-			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	119	287	0	ENST00000304494.5:c.102_109del	p.Gly35AlafsTer6	p.G35Afs*6	ENST00000304494	NM_000077.4	34	gcGGGGGCGCtg/gctg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044463	47044463	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	173	464	0	ENST00000329236.7:c.1726G>C	p.Asp576His	p.D576H	ENST00000329236	NM_001204466.1	576	Gac/Cac																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123239471	123239471	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	102	450	0	ENST00000358487.5:c.2366C>G	p.Ser789Cys	p.S789C	ENST00000358487	NM_000141.4	789	tCt/tGt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350578	15350578	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	101	591	0	ENST00000263377.2:c.3337G>C	p.Glu1113Gln	p.E1113Q	ENST00000263377	NM_058243.2	1113	Gag/Cag																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945924	17945924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	217	628	1	ENST00000458235.1:c.2015C>T	p.Pro672Leu	p.P672L	ENST00000458235	NM_000215.3	672	cCt/cTt																																																																															
EP300	2033	MSKCC	GRCh37	22	41573851	41573852	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	273	592	0	ENST00000263253.7:c.6137dup	p.Ser2047ValfsTer26	p.S2047Vfs*26	ENST00000263253	NM_001429.3	2046	gtg/gTtg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440277	52440277	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	68	380	0	ENST00000460680.1:c.775C>G	p.Leu259Val	p.L259V	ENST00000460680	NM_004656.3	259	Ctg/Gtg																																																																															
ATR	545	MSKCC	GRCh37	3	142176548	142176548	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	129	324	0	ENST00000350721.4:c.7553A>G	p.Asn2518Ser	p.N2518S	ENST00000350721	NM_001184.3	2518	aAt/aGt																																																																															
ATR	545	MSKCC	GRCh37	3	142253968	142253968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	139	222	0	ENST00000350721.4:c.3899G>T	p.Arg1300Leu	p.R1300L	ENST00000350721	NM_001184.3	1300	cGt/cTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251909	153251909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	118	297	0	ENST00000281708.4:c.1097G>A	p.Arg366Lys	p.R366K	ENST00000281708	NM_033632.3	366	aGg/aAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8525021	8525021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	84	240	0	ENST00000356435.5:c.583G>C	p.Glu195Gln	p.E195Q	ENST00000356435		195	Gag/Cag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040626	47040626	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	166	395	0	ENST00000329236.7:c.1030del	p.Glu344ArgfsTer63	p.E344Rfs*63	ENST00000329236	NM_001204466.1	343	Ggg/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578446	7578446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	302	601	0	ENST00000269305.4:c.484del	p.Ile162SerfsTer8	p.I162Sfs*8	ENST00000269305	NM_001126112.2	162	Atc/tc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984094	2984094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	217	522	0	ENST00000396946.4:c.436G>T	p.Asp146Tyr	p.D146Y	ENST00000396946	NM_032415.4	146	Gac/Tac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0040449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	122	631	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244091	153244091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	27	430	0	ENST00000281708.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000281708	NM_033632.3	689	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0040449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	98	363	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962834	2962834	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778151		P-0040449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	88	795	2	ENST00000396946.4:c.2074G>A	p.Val692Met	p.V692M	ENST00000396946	NM_032415.4	692	Gtg/Atg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118369241	118369241	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0040449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	65	278	0	ENST00000534358.1:c.5959del	p.Glu1987LysfsTer23	p.E1987Kfs*23	ENST00000534358	NM_005933.3	1987	Gaa/aa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946433	2946433	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775862540		P-0040449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	173	850	1	ENST00000396946.4:c.3304G>A	p.Val1102Met	p.V1102M	ENST00000396946	NM_032415.4	1102	Gtg/Atg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114724375	114724375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	55	305	0	ENST00000543371.1:c.442G>A	p.Ala148Thr	p.A148T	ENST00000543371	NM_001198531.1	148	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0040544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	102	496	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	44	267	0	ENST00000397062.3:c.101G>C	p.Arg34Pro	p.R34P	ENST00000397062	NM_006164.4	34	cGa/cCa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660099	227660099	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs774812399		P-0040544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	86	503	0	ENST00000305123.5:c.3356T>C	p.Phe1119Ser	p.F1119S	ENST00000305123	NM_005544.2	1119	tTt/tCt																																																																															
EP300	2033	MSKCC	GRCh37	22	41565507	41565508	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0040544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	20	209	0	ENST00000263253.7:c.4176_4177del	p.Arg1392SerfsTer8	p.R1392Sfs*8	ENST00000263253	NM_001429.3	1391	agGAga/agga																																																																															
VHL	7428	MSKCC	GRCh37	3	10188232	10188232	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	47	481	0	ENST00000256474.2:c.375C>G	p.His125Gln	p.H125Q	ENST00000256474	NM_000551.3	125	caC/caG																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801524	1801524	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	102	666	0	ENST00000260795.2:c.430A>G	p.Thr144Ala	p.T144A	ENST00000260795		144	Aca/Gca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0040655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	52	309	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	108	650	1	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28959073	28959073	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761475937		P-0040655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	44	323	0	ENST00000282397.4:c.2065G>A	p.Glu689Lys	p.E689K	ENST00000282397	NM_002019.4	689	Gag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145589	11145589	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0040655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	77	454	0	ENST00000344626.4:c.3952-1G>A		p.X1318_splice	ENST00000344626	NM_003072.3	1318																																																																																
ARID2	196528	MSKCC	GRCh37	12	46254728	46254728	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	47	201	0	ENST00000334344.6:c.4918A>G	p.Lys1640Glu	p.K1640E	ENST00000334344	NM_152641.2	1640	Aaa/Gaa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112580	115112581	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0040655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	89	570	3	ENST00000257566.3:c.1159_1160delinsAA	p.Pro387Asn	p.P387N	ENST00000257566	NM_016569.3	387	CCc/AAc																																																																															
AXL	558	MSKCC	GRCh37	19	41748889	41748889	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	34	473	0	ENST00000301178.4:c.1414G>T	p.Val472Phe	p.V472F	ENST00000301178	NM_021913.4	472	Gtc/Ttc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964388	70964388	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	56	266	0	ENST00000276594.2:c.1640C>A	p.Ser547Ter	p.S547*	ENST00000276594	NM_024504.3	547	tCa/tAa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039883	47039883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	65	606	0	ENST00000329236.7:c.992C>A	p.Ala331Glu	p.A331E	ENST00000329236	NM_001204466.1	331	gCg/gAg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679975	30679975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	89	570	0	ENST00000376406.3:c.1744G>A	p.Glu582Lys	p.E582K	ENST00000376406	NM_014641.2	582	Gag/Aag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81972509	81972509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755617580		P-0040758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	175	557	1	ENST00000359376.3:c.3302C>T	p.Thr1101Met	p.T1101M	ENST00000359376	NM_002661.3	1101	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	338	864	0	ENST00000269305.4:c.481del	p.Ala161ProfsTer9	p.A161Pfs*9	ENST00000269305	NM_001126112.2	161	Gcc/cc																																																																															
RET	5979	MSKCC	GRCh37	10	43600434	43600434	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	125	695	1	ENST00000355710.3:c.660C>A	p.Ser220Arg	p.S220R	ENST00000355710	NM_020975.4	220	agC/agA																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14303266	14303266	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0040758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	92	675	0	ENST00000256196.4:c.409del	p.Val137Ter	p.V137*	ENST00000256196		137	Gta/ta																																																																															
APC	324	MSKCC	GRCh37	5	112175231	112175231	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	94	240	0	ENST00000257430.4:c.3940del	p.Arg1314GlyfsTer7	p.R1314Gfs*7	ENST00000257430	NM_000038.5	1314	Agg/gg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520099	106520099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	44	213	0	ENST00000359195.3:c.2527C>A	p.Leu843Ile	p.L843I	ENST00000359195	NM_002649.2	843	Ctt/Att																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0040796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	107	702	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004657	16004657	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs528790312		P-0040796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	86	648	0	ENST00000268712.3:c.2597T>C	p.Ile866Thr	p.I866T	ENST00000268712	NM_006311.3	866	aTa/aCa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	142949972	142949972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	70	555	1	ENST00000262992.4:c.2738G>T	p.Arg913Ile	p.R913I	ENST00000262992	NM_001101669.1	913	aGa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576919	7576920	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0040796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	73	702	0	ENST00000269305.4:c.926_927delinsG	p.Pro309ArgfsTer36	p.P309Rfs*36	ENST00000269305	NM_001126112.2	309	cCC/cG																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419986	41419986	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372989163		P-0040810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	174	811	0	ENST00000373198.4:c.335G>A	p.Arg112His	p.R112H	ENST00000373198	NM_133170.3	112	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	213	446	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0040810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	158	702	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306550	41306550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760520624		P-0040810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	339	732	0	ENST00000373198.4:c.1109C>T	p.Thr370Met	p.T370M	ENST00000373198	NM_133170.3	370	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175777	112175777	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	72	359	0	ENST00000257430.4:c.4486del	p.Thr1496LeufsTer11	p.T1496Lfs*11	ENST00000257430	NM_000038.5	1496	Act/ct																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913386		P-0040894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	376	409	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	83	491	1	ENST00000269305.4:c.645T>A	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agA																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551823	150551823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	111	231	0	ENST00000369026.2:c.184G>T	p.Gly62Cys	p.G62C	ENST00000369026	NM_021960.4	62	Ggc/Tgc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225367681	225367681	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0040894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	60	270	0	ENST00000264414.4:c.1485+1G>T		p.X495_splice	ENST00000264414	NM_003590.4	495																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31024533	31024533	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	79	456	0	ENST00000375687.4:c.4018C>G	p.Pro1340Ala	p.P1340A	ENST00000375687	NM_015338.5	1340	Cca/Gca																																																																															
APC	324	MSKCC	GRCh37	5	112175741	112175741	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1165759330		P-0040894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	41	237	0	ENST00000257430.4:c.4450G>C	p.Asp1484His	p.D1484H	ENST00000257430	NM_000038.5	1484	Gat/Cat																																																																															
NSD1	64324	MSKCC	GRCh37	5	176684100	176684100	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	209	376	1	ENST00000439151.2:c.4914C>A	p.His1638Gln	p.H1638Q	ENST00000439151	NM_022455.4	1638	caC/caA																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44966716	44966716	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	24	180	1	ENST00000377967.4:c.3940G>T	p.Gly1314Ter	p.G1314*	ENST00000377967	NM_021140.2	1314	Gga/Tga																																																																															
ATRX	546	MSKCC	GRCh37	X	76939562	76939562	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0040894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	15	205	0	ENST00000373344.5:c.1186A>T	p.Lys396Ter	p.K396*	ENST00000373344	NM_000489.3	396	Aag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0040936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	417	775	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0040936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	711	778	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259735	16259735	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	546	636	0	ENST00000375759.3:c.7003del	p.Thr2335GlnfsTer18	p.T2335Qfs*18	ENST00000375759	NM_015001.2	2334	Aaa/aa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117430	115117431	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0040936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	380	443	0	ENST00000257566.3:c.743dup	p.Tyr248Ter	p.Y248*	ENST00000257566	NM_016569.3	248	tac/taAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68849442	68849448	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTACA	CAGTACA	-			P-0040936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	575	774	0	ENST00000261769.5:c.1345_1351del	p.Gln449PhefsTer4	p.Q449Ffs*4	ENST00000261769	NM_004360.3	449	CAGTACAtt/tt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106543608	106543608	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0040936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	213	282	0	ENST00000369096.4:c.410G>T	p.Arg137Met	p.R137M	ENST00000369096	NM_001198.3	137	aGg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0040945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	539	496	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1222982	1222982	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T	rs727504172		P-0040945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	209	681	0	ENST00000326873.7:c.921-2A>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																																
RARA	5914	MSKCC	GRCh37	17	38512474	38512474	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770732457		P-0040945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	90	1059	1	ENST00000254066.5:c.1385C>T	p.Pro462Leu	p.P462L	ENST00000254066	NM_000964.3	462	cCg/cTg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434189	12434189	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	37	537	0	ENST00000287820.6:c.557G>T	p.Ser186Ile	p.S186I	ENST00000287820	NM_015869.4	186	aGt/aTt																																																																															
AR	367	MSKCC	GRCh37	X	66765861	66765861	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	111	1132	0	ENST00000374690.3:c.873A>T	p.Lys291Asn	p.K291N	ENST00000374690	NM_000044.3	291	aaA/aaT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0040952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	258	810	0	ENST00000275493.2:c.2303_2311dup	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95590961	95590961	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	25	367	1	ENST00000343455.3:c.948G>T	p.Trp316Cys	p.W316C	ENST00000343455	NM_177438.2	316	tgG/tgT																																																																															
KDR	3791	MSKCC	GRCh37	4	55953898	55953898	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs143459233		P-0040952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	77	580	0	ENST00000263923.4:c.3538A>T	p.Ile1180Leu	p.I1180L	ENST00000263923	NM_002253.2	1180	Ata/Tta																																																																															
APC	324	MSKCC	GRCh37	5	112173435	112173435	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	38	391	0	ENST00000257430.4:c.2144A>C	p.His715Pro	p.H715P	ENST00000257430	NM_000038.5	715	cAc/cCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0040953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	111	432	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032023	26032023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	34	443	0	ENST00000244661.2:c.266C>T	p.Ala89Val	p.A89V	ENST00000244661	NM_003537.3	89	gCg/gTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001329	29001329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	46	435	0	ENST00000282397.4:c.1403G>T	p.Trp468Leu	p.W468L	ENST00000282397	NM_002019.4	468	tGg/tTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527727	103527727	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	38	366	0	ENST00000355739.4:c.3035G>T	p.Ser1012Ile	p.S1012I	ENST00000355739	NM_000123.3	1012	aGc/aTc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639255	3639255	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138484365		P-0040953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	202	875	8	ENST00000294008.3:c.4384G>A	p.Ala1462Thr	p.A1462T	ENST00000294008	NM_032444.2	1462	Gcc/Acc																																																																															
SMO	6608	MSKCC	GRCh37	7	128852243	128852243	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs149170801		P-0040953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	85	817	1	ENST00000249373.3:c.2315G>T	p.Arg772Leu	p.R772L	ENST00000249373	NM_005631.4	772	cGc/cTc																																																																															
MYC	4609	MSKCC	GRCh37	8	128751205	128751205	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	160	514	0	ENST00000377970.2:c.742G>T	p.Gly248Cys	p.G248C	ENST00000377970	NM_002467.4	248	Ggc/Tgc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971019	21971045	+	inframe_deletion	In_Frame_Del	DEL	CAGACGGCCCCAGGCATCGCGCACGTC	CAGACGGCCCCAGGCATCGCGCACGTC	-			P-0040953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	36	577	0	ENST00000304494.5:c.313_339del	p.Asp105_Leu113del	p.D105_L113del	ENST00000304494	NM_000077.4	105	GACGTGCGCGATGCCTGGGGCCGTCTG/-																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321368	1321369	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0040953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	58	587	0	ENST00000381566.1:c.386_387delinsTT	p.Trp129Phe	p.W129F	ENST00000381566		129	tGG/tTT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0041011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	136	793	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039347	47039347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	119	724	2	ENST00000329236.7:c.739G>A	p.Ala247Thr	p.A247T	ENST00000329236	NM_001204466.1	247	Gcg/Acg																																																																															
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	45	232	0	ENST00000257430.4:c.4063dup	p.Ser1355PhefsTer20	p.S1355Ffs*20	ENST00000257430	NM_000038.5	1353	-/T																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920447	114920449	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GCA	GCA	-			P-0041011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	65	423	0	ENST00000543371.1:c.1389_1391del	p.Cys463_Arg464delinsTrp	p.C463_R464delinsW	ENST00000543371	NM_001198531.1	463	tGCAgg/tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416389	49416389	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	55	421	0	ENST00000301067.7:c.16322A>T	p.Lys5441Ile	p.K5441I	ENST00000301067	NM_003482.3	5441	aAa/aTa																																																																															
RET	5979	MSKCC	GRCh37	10	43615153	43615153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	443	1003	3	ENST00000355710.3:c.2567G>T	p.Trp856Leu	p.W856L	ENST00000355710	NM_020975.4	856	tGg/tTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133238115	133238116	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	190	557	0	ENST00000320574.5:c.2860_2861dup	p.Tyr956GlyfsTer27	p.Y956Gfs*27	ENST00000320574	NM_006231.2	954	aag/aaAAg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28893662	28893662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	258	533	2	ENST00000282397.4:c.3184C>T	p.Pro1062Ser	p.P1062S	ENST00000282397	NM_002019.4	1062	Cct/Tct																																																																															
RB1	5925	MSKCC	GRCh37	13	48951122	48951122	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	162	412	0	ENST00000267163.4:c.1284G>C	p.Glu428Asp	p.E428D	ENST00000267163	NM_000321.2	428	gaG/gaC																																																																															
RB1	5925	MSKCC	GRCh37	13	49039341	49039341	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	343	716	3	ENST00000267163.4:c.2330del	p.Pro777LeufsTer33	p.P777Lfs*33	ENST00000267163	NM_000321.2	776	Ccc/cc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2110787	2110787	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	885	1016	0	ENST00000219476.3:c.1092C>G	p.Ile364Met	p.I364M	ENST00000219476	NM_000548.3	364	atC/atG																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14024705	14024705	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	216	492	0	ENST00000311895.7:c.931G>C	p.Glu311Gln	p.E311Q	ENST00000311895	NM_005236.2	311	Gaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	472	938	2	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29562705	29562705	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	315	592	0	ENST00000358273.4:c.3785C>A	p.Ser1262Tyr	p.S1262Y	ENST00000358273	NM_001042492.2	1262	tCt/tAt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37673764	37673764	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	321	759	0	ENST00000447079.4:c.2918A>T	p.Lys973Ile	p.K973I	ENST00000447079	NM_015083.1	973	aAa/aTa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37856540	37856540	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1307888184		P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	295	453	0	ENST00000269571.5:c.49C>T	p.Pro17Ser	p.P17S	ENST00000269571		17	Ccc/Tcc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468382	89468382	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	149	289	1	ENST00000336596.2:c.1916G>T	p.Arg639Leu	p.R639L	ENST00000336596	NM_005233.5	639	cGc/cTc																																																																															
KIT	3815	MSKCC	GRCh37	4	55598050	55598050	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	236	476	1	ENST00000288135.5:c.2247A>T	p.Glu749Asp	p.E749D	ENST00000288135	NM_000222.2	749	gaA/gaT																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976838	2976838	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	411	935	1	ENST00000396946.4:c.1174C>T	p.Gln392Ter	p.Q392*	ENST00000396946	NM_032415.4	392	Cag/Tag																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376287	225376287	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	42	317	0	ENST00000264414.4:c.667A>T	p.Lys223Ter	p.K223*	ENST00000264414	NM_003590.4	223	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	138	377	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-	rs587780067		P-0041239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	202	658	0	ENST00000269305.4:c.365_366del	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0041277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			491	223	526	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108141986	108141986	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs876660628		P-0041277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	60	459	1	ENST00000278616.4:c.2930G>T	p.Cys977Phe	p.C977F	ENST00000278616	NM_000051.3	977	tGt/tTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427524	49427524	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs768831474		P-0041277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			582	129	920	0	ENST00000301067.7:c.10964T>G	p.Leu3655Arg	p.L3655R	ENST00000301067	NM_003482.3	3655	cTt/cGt																																																																															
AR	367	MSKCC	GRCh37	X	66766510	66766510	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			256	149	484	0	ENST00000374690.3:c.1522A>T	p.Met508Leu	p.M508L	ENST00000374690	NM_000044.3	508	Atg/Ttg																																																																															
ATRX	546	MSKCC	GRCh37	X	76940041	76940041	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	164	359	0	ENST00000373344.5:c.707A>T	p.His236Leu	p.H236L	ENST00000373344	NM_000489.3	236	cAt/cTt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245273	46245273	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	135	639	1	ENST00000334344.6:c.3367G>T	p.Gly1123Trp	p.G1123W	ENST00000334344	NM_152641.2	1123	Ggg/Tgg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362422	40362422	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0041277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			495	122	714	1	ENST00000293328.3:c.1774G>T	p.Gly592Trp	p.G592W	ENST00000293328	NM_012448.3	592	Ggg/Tgg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198274695	198274695	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	59	605	0	ENST00000335508.6:c.703A>G	p.Thr235Ala	p.T235A	ENST00000335508	NM_012433.2	235	Aca/Gca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629788	187629788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			581	179	859	0	ENST00000441802.2:c.1194G>T	p.Leu398Phe	p.L398F	ENST00000441802	NM_005245.3	398	ttG/ttT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0041300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	100	375	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55211013	55211013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	161	364	0	ENST00000275493.2:c.256G>A	p.Ala86Thr	p.A86T	ENST00000275493	NM_005228.3	86	Gct/Act																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420266	88420266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	48	415	0	ENST00000360948.2:c.2420G>T	p.Trp807Leu	p.W807L	ENST00000360948	NM_001012338.2	807	tGg/tTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	191	357	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	610	678	0	ENST00000269305.4:c.472C>G	p.Arg158Gly	p.R158G	ENST00000269305	NM_001126112.2	158	Cgc/Ggc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610247	10610247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	625	717	0	ENST00000171111.5:c.463G>T	p.Val155Phe	p.V155F	ENST00000171111	NM_203500.1	155	Gtc/Ttc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52696229	52696229	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	38	482	0	ENST00000394830.3:c.448G>C	p.Glu150Gln	p.E150Q	ENST00000394830	NM_018313.4	150	Gag/Cag																																																																															
RAD52	5893	MSKCC	GRCh37	12	1039289	1039289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11571421		P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	95	423	0	ENST00000358495.3:c.208C>T	p.Arg70Trp	p.R70W	ENST00000358495	NM_134424.2	70	Cgg/Tgg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139818347	139818347	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs776376824		P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	439	686	0	ENST00000247668.2:c.1182C>G	p.Ile394Met	p.I394M	ENST00000247668	NM_021138.3	394	atC/atG																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141031	55141031	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	108	285	0	ENST00000257290.5:c.1677G>T	p.Trp559Cys	p.W559C	ENST00000257290	NM_006206.4	559	tgG/tgT																																																																															
ATM	472	MSKCC	GRCh37	11	108098370	108098370	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	38	228	0	ENST00000278616.4:c.19G>C	p.Asp7His	p.D7H	ENST00000278616	NM_000051.3	7	Gat/Cat																																																																															
POLE	5426	MSKCC	GRCh37	12	133219221	133219221	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	249	598	0	ENST00000320574.5:c.4823T>A	p.Leu1608Gln	p.L1608Q	ENST00000320574	NM_006231.2	1608	cTg/cAg																																																																															
POLE	5426	MSKCC	GRCh37	12	133249308	133249308	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	450	640	0	ENST00000320574.5:c.1591G>T	p.Gly531Ter	p.G531*	ENST00000320574	NM_006231.2	531	Gga/Tga																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434970	110434970	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	181	737	0	ENST00000375856.3:c.3431G>T	p.Arg1144Leu	p.R1144L	ENST00000375856	NM_003749.2	1144	cGc/cTc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472643	88472643	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	33	288	0	ENST00000360948.2:c.1912A>C	p.Ile638Leu	p.I638L	ENST00000360948	NM_001012338.2	638	Atc/Ctc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56864539	56864539	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	153	336	0	ENST00000308159.5:c.1027C>A	p.His343Asn	p.H343N	ENST00000308159	NM_014669.4	343	Cac/Aac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992174	72992174	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	461	570	0	ENST00000268489.5:c.1871G>T	p.Gly624Val	p.G624V	ENST00000268489	NM_006885.3	624	gGc/gTc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81939087	81939087	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	364	467	0	ENST00000359376.3:c.1442T>A	p.Leu481Gln	p.L481Q	ENST00000359376	NM_002661.3	481	cTg/cAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207069	1207069	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	600	769	1	ENST00000326873.7:c.157G>T	p.Asp53Tyr	p.D53Y	ENST00000326873	NM_000455.4	53	Gac/Tac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302882	15302882	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	644	801	0	ENST00000263388.2:c.568A>T	p.Thr190Ser	p.T190S	ENST00000263388	NM_000435.2	190	Aca/Tca																																																																															
CASP8	841	MSKCC	GRCh37	2	202149940	202149940	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	377	544	0	ENST00000358485.4:c.1381G>C	p.Gly461Arg	p.G461R	ENST00000358485	NM_001080125.1	461	Ggg/Cgg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24143238	24143238	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	510	590	0	ENST00000263121.7:c.470G>T	p.Gly157Val	p.G157V	ENST00000263121	NM_003073.3	157	gGc/gTc																																																																															
EP300	2033	MSKCC	GRCh37	22	41554433	41554433	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	294	318	0	ENST00000263253.7:c.3519G>C	p.Gln1173His	p.Q1173H	ENST00000263253	NM_001429.3	1173	caG/caC																																																																															
BAP1	8314	MSKCC	GRCh37	3	52443880	52443880	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs916069743		P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	569	615	0	ENST00000460680.1:c.15G>T	p.Trp5Cys	p.W5C	ENST00000460680	NM_004656.3	5	tgG/tgT																																																																															
TP63	8626	MSKCC	GRCh37	3	189526190	189526190	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766297918		P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1162	287	581	0	ENST00000264731.3:c.454C>T	p.Pro152Ser	p.P152S	ENST00000264731	NM_003722.4	152	Ccc/Tcc																																																																															
KIT	3815	MSKCC	GRCh37	4	55575700	55575700	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	46	251	0	ENST00000288135.5:c.1226T>G	p.Val409Gly	p.V409G	ENST00000288135	NM_000222.2	409	gTg/gGg																																																																															
KIT	3815	MSKCC	GRCh37	4	55595588	55595588	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	37	200	0	ENST00000288135.5:c.2078A>T	p.Lys693Met	p.K693M	ENST00000288135	NM_000222.2	693	aAg/aTg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131930722	131930722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	37	313	0	ENST00000265335.6:c.1955C>T	p.Ser652Leu	p.S652L	ENST00000265335		652	tCa/tTa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518702	176518702	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	206	477	0	ENST00000292408.4:c.620G>C	p.Trp207Ser	p.W207S	ENST00000292408	NM_213647.1	207	tGg/tCg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30676011	30676011	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	131	481	0	ENST00000376406.3:c.2345C>G	p.Pro782Arg	p.P782R	ENST00000376406	NM_014641.2	782	cCt/cGt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729616	41729616	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	387	405	0	ENST00000242208.4:c.913C>G	p.His305Asp	p.H305D	ENST00000242208	NM_002192.2	305	Cat/Gat																																																																															
SMO	6608	MSKCC	GRCh37	7	128845496	128845496	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	549	638	0	ENST00000249373.3:c.793G>T	p.Val265Phe	p.V265F	ENST00000249373	NM_005631.4	265	Gtt/Ttt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135798752	135798752	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	65	209	0	ENST00000298552.3:c.491G>C	p.Trp164Ser	p.W164S	ENST00000298552	NM_001162426.1	164	tGg/tCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0041310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	45	400	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
BLM	641	MSKCC	GRCh37	15	91346819	91346819	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140387675		P-0041310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	56	402	0	ENST00000355112.3:c.3427G>A	p.Glu1143Lys	p.E1143K	ENST00000355112	NM_000057.2	1143	Gaa/Aaa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044550	47044550	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	105	377	1	ENST00000329236.7:c.1813G>T	p.Glu605Ter	p.E605*	ENST00000329236	NM_001204466.1	605	Gag/Tag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65303766	65303766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	44	522	0	ENST00000342505.4:c.2989C>T	p.Arg997Trp	p.R997W	ENST00000342505	NM_002227.2	997	Cgg/Tgg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892152	9892152	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	73	516	0	ENST00000330684.3:c.2338C>G	p.Leu780Val	p.L780V	ENST00000330684	NM_001134407.1	780	Ctt/Gtt																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747936	41747936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	65	341	0	ENST00000226382.2:c.833G>T	p.Gly278Val	p.G278V	ENST00000226382	NM_003924.3	278	gGc/gTc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	142950056	142950056	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	48	290	0	ENST00000262992.4:c.2654G>T	p.Arg885Leu	p.R885L	ENST00000262992	NM_001101669.1	885	cGc/cTc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737907	145737907	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	221	814	0	ENST00000428558.2:c.2923C>A	p.Pro975Thr	p.P975T	ENST00000428558	NM_004260.3	975	Cct/Act																																																																															
SYK	6850	MSKCC	GRCh37	9	93606221	93606221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	79	662	0	ENST00000375746.1:c.41C>T	p.Pro14Leu	p.P14L	ENST00000375746	NM_001174167.1	14	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578507	7578507	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519977		P-0041381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	281	953	0	ENST00000269305.4:c.423C>G	p.Cys141Trp	p.C141W	ENST00000269305	NM_001126112.2	141	tgC/tgG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398220	25398220	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	105	334	0	ENST00000256078.4:c.99T>A	p.Asp33Glu	p.D33E	ENST00000256078	NM_033360.2	33	gaT/gaA																																																																															
CARD11	84433	MSKCC	GRCh37	7	2954927	2954927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	29	721	0	ENST00000396946.4:c.2783G>A	p.Gly928Glu	p.G928E	ENST00000396946	NM_032415.4	928	gGg/gAg																																																																															
MPL	4352	MSKCC	GRCh37	1	43805114	43805114	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1399460857		P-0041381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	188	655	0	ENST00000372470.3:c.564T>G	p.Ile188Met	p.I188M	ENST00000372470	NM_005373.2	188	atT/atG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434112	49434112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	203	725	0	ENST00000301067.7:c.7441G>T	p.Ala2481Ser	p.A2481S	ENST00000301067	NM_003482.3	2481	Gct/Tct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440412	49440412	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	35	783	0	ENST00000301067.7:c.4398G>T	p.Lys1466Asn	p.K1466N	ENST00000301067	NM_003482.3	1466	aaG/aaT																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911433	32911433	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0041381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	17	356	0	ENST00000380152.3:c.2941A>T	p.Lys981Ter	p.K981*	ENST00000380152		981	Aaa/Taa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25498368	25498368	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0041381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	33	430	0	ENST00000264709.3:c.492+1G>T		p.X164_splice	ENST00000264709	NM_175629.2	164																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89445093	89445093	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	34	409	0	ENST00000336596.2:c.1413G>C	p.Glu471Asp	p.E471D	ENST00000336596	NM_005233.5	471	gaG/gaC																																																																															
APC	324	MSKCC	GRCh37	5	112175229	112175230	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAGG			P-0041381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	52	215	0	ENST00000257430.4:c.3940_3943dup	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1313	act/acTAGGt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047173	180047173	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0041381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	25	580	1	ENST00000261937.6:c.2542G>T	p.Gly848Trp	p.G848W	ENST00000261937	NM_182925.4	848	Ggg/Tgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860797	151860797	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	24	412	0	ENST00000262189.6:c.9865C>A	p.Pro3289Thr	p.P3289T	ENST00000262189	NM_170606.2	3289	Ccc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	96	692	0	ENST00000269305.4:c.853G>T	p.Glu285Ter	p.E285*	ENST00000269305	NM_001126112.2	285	Gag/Tag																																																																															
CASP8	841	MSKCC	GRCh37	2	202149973	202149973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1272714323		P-0041388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	79	577	1	ENST00000358485.4:c.1414C>T	p.Arg472Ter	p.R472*	ENST00000358485	NM_001080125.1	472	Cga/Tga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427324	427324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	74	520	1	ENST00000399788.2:c.2845C>T	p.Leu949Phe	p.L949F	ENST00000399788	NM_001042603.1	949	Ctt/Ttt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32181473	32181473	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1372906994		P-0041388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	80	578	0	ENST00000375023.3:c.2312G>A	p.Cys771Tyr	p.C771Y	ENST00000375023	NM_004557.3	771	tGt/tAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139403361	139403361	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	99	697	0	ENST00000277541.6:c.3132del	p.Arg1044SerfsTer135	p.R1044Sfs*135	ENST00000277541	NM_017617.3	1044	agG/ag																																																																															
GATA1	2623	MSKCC	GRCh37	X	48651703	48651703	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0041388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	60	556	0	ENST00000376670.3:c.869A>G	p.Gln290Arg	p.Q290R	ENST00000376670	NM_002049.3	290	cAg/cGg																																																																															
AR	367	MSKCC	GRCh37	X	66766561	66766561	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	88	700	0	ENST00000374690.3:c.1573G>T	p.Gly525Cys	p.G525C	ENST00000374690	NM_000044.3	525	Ggc/Tgc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913403		P-0041470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	28	329	1	ENST00000349496.5:c.110C>A	p.Ser37Tyr	p.S37Y	ENST00000349496	NM_001904.3	37	tCt/tAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242483	55242506	+	inframe_deletion	In_Frame_Del	DEL	ATCTCCGAAAGCCAACAAGGAAAT	ATCTCCGAAAGCCAACAAGGAAAT	-	rs727504232		P-0041470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	41	415	0	ENST00000275493.2:c.2253_2276del	p.Ser752_Ile759del	p.S752_I759del	ENST00000275493	NM_005228.3	751	acATCTCCGAAAGCCAACAAGGAAATc/acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	71	580	0	ENST00000269305.4:c.734del	p.Gly245AlafsTer2	p.G245Afs*2	ENST00000269305	NM_001126112.2	245	gGc/gc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971154	21971190	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCG	CGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCG	-			P-0041470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	50	413	0	ENST00000304494.5:c.168_204del	p.Ser56ArgfsTer78	p.S56Rfs*78	ENST00000304494	NM_000077.4	56	agCGCCCGAGTGGCGGAGCTGCTGCTGCTCCACGGCGCG/ag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0041594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	105	373	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860316	151860316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	68	360	0	ENST00000262189.6:c.10346C>T	p.Ser3449Phe	p.S3449F	ENST00000262189	NM_170606.2	3449	tCc/tTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220622	1220622	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131690923		P-0041637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	241	736	0	ENST00000326873.7:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000326873	NM_000455.4	214	Cag/Tag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453132	140453132	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913365		P-0041637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	72	346	0	ENST00000288602.6:c.1803A>T	p.Lys601Asn	p.K601N	ENST00000288602	NM_004333.4	601	aaA/aaT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790072	40790072	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61753667		P-0041637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	176	633	0	ENST00000373198.4:c.2659G>A	p.Ala887Thr	p.A887T	ENST00000373198	NM_133170.3	887	Gcc/Acc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261128	16261128	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772466830		P-0041637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	74	483	0	ENST00000375759.3:c.8393C>T	p.Ala2798Val	p.A2798V	ENST00000375759	NM_015001.2	2798	gCa/gTa																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50483693	50483693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	63	419	0	ENST00000394963.4:c.798G>T	p.Glu266Asp	p.E266D	ENST00000394963	NM_003076.4	266	gaG/gaT																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288762	33288762	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1260764171		P-0041637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	37	413	0	ENST00000374542.5:c.790T>C	p.Tyr264His	p.Y264H	ENST00000374542	NM_001141970.1	264	Tac/Cac																																																																															
ATRX	546	MSKCC	GRCh37	X	76938079	76938079	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	94	563	0	ENST00000373344.5:c.2669C>A	p.Ser890Ter	p.S890*	ENST00000373344	NM_000489.3	890	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0041641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	340	926	2	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981555	70981555	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1570	248	1630	0	ENST00000276594.2:c.541G>T	p.Gly181Cys	p.G181C	ENST00000276594	NM_024504.3	181	Ggt/Tgt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11107003	11107003	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	285	869	1	ENST00000344626.4:c.1708C>T	p.Gln570Ter	p.Q570*	ENST00000344626	NM_003072.3	570	Cag/Tag																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121435375	121435375	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1506	142	1059	0	ENST00000257555.6:c.1408C>A	p.Pro470Thr	p.P470T	ENST00000257555		470	Ccc/Acc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420273	88420273	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	235	686	0	ENST00000360948.2:c.2413G>T	p.Gly805Trp	p.G805W	ENST00000360948	NM_001012338.2	805	Ggg/Tgg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2112497	2112497	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0041641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	349	917	0	ENST00000219476.3:c.1258-1G>T		p.X420_splice	ENST00000219476	NM_000548.3	420																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40739077	40739078	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0041641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	245	933	1	ENST00000373198.4:c.3206_3207delinsTT	p.Trp1069Phe	p.W1069F	ENST00000373198	NM_133170.3	1069	tGG/tTT																																																																															
EP300	2033	MSKCC	GRCh37	22	41531892	41531892	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0041641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	142	525	0	ENST00000263253.7:c.1604C>G	p.Ser535Ter	p.S535*	ENST00000263253	NM_001429.3	535	tCa/tGa																																																																															
EZH2	2146	MSKCC	GRCh37	7	148526880	148526880	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	77	306	0	ENST00000320356.2:c.424G>T	p.Asp142Tyr	p.D142Y	ENST00000320356	NM_004456.4	142	Gat/Tat																																																																															
PREX2	80243	MSKCC	GRCh37	8	68942817	68942817	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	268	819	0	ENST00000288368.4:c.629A>T	p.Asn210Ile	p.N210I	ENST00000288368	NM_024870.2	210	aAc/aTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412147	63412147	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	370	583	0	ENST00000330258.3:c.1020G>T	p.Met340Ile	p.M340I	ENST00000330258	NM_152424.3	340	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	274	791	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ABL1	25	MSKCC	GRCh37	9	133760663	133760663	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	235	1228	1	ENST00000318560.5:c.2986C>T	p.Gln996Ter	p.Q996*	ENST00000318560	NM_005157.4	996	Cag/Tag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420213	88420213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	80	558	1	ENST00000360948.2:c.2473C>A	p.His825Asn	p.H825N	ENST00000360948	NM_001012338.2	825	Cat/Aat																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396527	139396527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	251	882	1	ENST00000277541.6:c.5398G>T	p.Ala1800Ser	p.A1800S	ENST00000277541	NM_017617.3	1800	Gct/Tct																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946340	71946340	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	495	879	3	ENST00000298229.2:c.2504G>T	p.Gly835Val	p.G835V	ENST00000298229	NM_001567.3	835	gGg/gTg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867421	35867421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1354581284		P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	166	318	0	ENST00000303115.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000303115	NM_002185.3	79	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254750	16254750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	250	590	1	ENST00000375759.3:c.2015G>T	p.Arg672Leu	p.R672L	ENST00000375759	NM_015001.2	672	cGa/cTa																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154886	2154886	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1268424766		P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	244	865	2	ENST00000434045.2:c.335C>T	p.Ala112Val	p.A112V	ENST00000434045	NM_001127598.1	112	gCa/gTa																																																																															
INS-IGF2	723961	MSKCC	GRCh37	11	2154896	2154896	+	splice_acceptor_variant,NMD_transcript_variant	Splice_Site	SNP	C	C	A			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	222	834	0	ENST00000356578.4:c.*210-1G>T			ENST00000356578																																																																																		
INPPL1	3636	MSKCC	GRCh37	11	71943774	71943774	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1209	117	817	0	ENST00000298229.2:c.1817G>T	p.Gly606Val	p.G606V	ENST00000298229	NM_001567.3	606	gGg/gTg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180415	94180415	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	214	529	0	ENST00000323929.3:c.1753G>T	p.Ala585Ser	p.A585S	ENST00000323929	NM_005591.3	585	Gca/Tca																																																																															
PGR	5241	MSKCC	GRCh37	11	100909867	100909867	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	80	207	0	ENST00000325455.5:c.2782C>G	p.Leu928Val	p.L928V	ENST00000325455	NM_001202474.3	928	Ctt/Gtt																																																																															
YAP1	10413	MSKCC	GRCh37	11	102076701	102076701	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	91	527	0	ENST00000282441.5:c.880G>C	p.Val294Leu	p.V294L	ENST00000282441	NM_001130145.2	294	Gtc/Ctc																																																																															
MSI1	4440	MSKCC	GRCh37	12	120791138	120791138	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs748263600		P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	120	850	0	ENST00000257552.2:c.697A>G	p.Thr233Ala	p.T233A	ENST00000257552	NM_002442.3	233	Aca/Gca																																																																															
B2M	567	MSKCC	GRCh37	15	45007776	45007777	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	50	310	0	ENST00000558401.1:c.223_224delinsAA	p.Ser75Asn	p.S75N	ENST00000558401	NM_004048.2	75	TCt/AAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857160	9857160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	110	435	0	ENST00000330684.3:c.4241G>A	p.Arg1414Lys	p.R1414K	ENST00000330684	NM_001134407.1	1414	aGg/aAg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858586	9858586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	84	446	0	ENST00000330684.3:c.2815G>A	p.Gly939Arg	p.G939R	ENST00000330684	NM_001134407.1	939	Ggg/Agg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56792548	56792548	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs769436848		P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	108	449	0	ENST00000308159.5:c.278T>G	p.Val93Gly	p.V93G	ENST00000308159	NM_014669.4	93	gTg/gGg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37676329	37676329	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	199	512	0	ENST00000447079.4:c.3084G>T	p.Met1028Ile	p.M1028I	ENST00000447079	NM_015083.1	1028	atG/atT																																																																															
BRCA1	672	MSKCC	GRCh37	17	41226419	41226419	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	91	677	0	ENST00000357654.3:c.4604A>C	p.Glu1535Ala	p.E1535A	ENST00000357654	NM_007294.3	1535	gAg/gCg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688809	47688809	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	70	320	0	ENST00000347630.2:c.491T>C	p.Val164Ala	p.V164A	ENST00000347630	NM_001007230.1	164	gTg/gCg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256826	19256826	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs893528951		P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	159	555	0	ENST00000162023.5:c.887G>T	p.Gly296Val	p.G296V	ENST00000162023		296	gGc/gTc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467408	25467409	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	67	602	0	ENST00000264709.3:c.1667_1667+1delinsTT		p.X556_splice	ENST00000264709	NM_175629.2	556																																																																																
MSH2	4436	MSKCC	GRCh37	2	47635666	47635666	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	56	279	0	ENST00000233146.2:c.338A>T	p.Lys113Met	p.K113M	ENST00000233146	NM_000251.2	113	aAg/aTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31016004	31016004	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	72	568	0	ENST00000375687.4:c.326A>G	p.Glu109Gly	p.E109G	ENST00000375687	NM_015338.5	109	gAg/gGg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686408	30686408	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	60	274	0	ENST00000359013.4:c.338+1G>A		p.X113_splice	ENST00000359013	NM_001024847.2	113																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89448495	89448495	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	37	366	0	ENST00000336596.2:c.1459C>A	p.Leu487Met	p.L487M	ENST00000336596	NM_005233.5	487	Ctg/Atg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851795	134851795	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	87	791	0	ENST00000398015.3:c.1201C>A	p.Pro401Thr	p.P401T	ENST00000398015	NM_004441.4	401	Ccc/Acc																																																																															
SESN1	27244	MSKCC	GRCh37	6	109322691	109322691	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	31	358	0	ENST00000436639.2:c.346A>T	p.Ile116Phe	p.I116F	ENST00000436639	NM_014454.2	116	Atc/Ttc																																																																															
FYN	2534	MSKCC	GRCh37	6	112041202	112041202	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	154	443	0	ENST00000368678.4:c.53G>T	p.Arg18Met	p.R18M	ENST00000368678		18	aGg/aTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69129856	69129856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	73	237	0	ENST00000288368.4:c.4610C>T	p.Thr1537Ile	p.T1537I	ENST00000288368	NM_024870.2	1537	aCc/aTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8492918	8492918	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	150	546	0	ENST00000356435.5:c.2411del	p.Thr804LysfsTer27	p.T804Kfs*27	ENST00000356435		804	aCa/aa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211410	98211410	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	153	799	0	ENST00000331920.6:c.3745G>T	p.Gly1249Cys	p.G1249C	ENST00000331920	NM_000264.3	1249	Ggc/Tgc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918534	44918534	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	70	193	0	ENST00000377967.4:c.1017G>T	p.Gln339His	p.Q339H	ENST00000377967	NM_021140.2	339	caG/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0041866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	91	954	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57466846	57466846	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	62	400	0	ENST00000371085.3:c.65C>A	p.Ala22Asp	p.A22D	ENST00000371085	NM_000516.4	22	gCc/gAc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673242	30673242	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	69	726	0	ENST00000376406.3:c.3718C>A	p.Pro1240Thr	p.P1240T	ENST00000376406	NM_014641.2	1240	Cct/Act																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998891	11998891	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0041967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	32	183	0	ENST00000353533.5:c.394-1G>T		p.X132_splice	ENST00000353533	NM_003010.3	132																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41274919	41274919	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	62	295	0	ENST00000349496.5:c.1169A>G	p.Asp390Gly	p.D390G	ENST00000349496	NM_001904.3	390	gAt/gGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786202918		P-0042005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	139	474	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	89	429	0	ENST00000346208.3:c.1300dup	p.His434ProfsTer73	p.H434Pfs*73	ENST00000346208		433	cac/caCc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717705	89717705	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1064794675		P-0042005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	138	482	0	ENST00000371953.3:c.730C>T	p.Pro244Ser	p.P244S	ENST00000371953	NM_000314.4	244	Cct/Tct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0042034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	100	576	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31424569	31424569	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773151368		P-0042034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	275	921	0	ENST00000344624.3:c.3226G>A	p.Glu1076Lys	p.E1076K	ENST00000344624		1076	Gaa/Aaa																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588107	69588107	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	53	840	0	ENST00000168712.1:c.591G>T	p.Met197Ile	p.M197I	ENST00000168712	NM_002007.2	197	atG/atT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	23	687	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131691026		P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	336	1163	1	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790830	89790830	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	261	848	0	ENST00000336032.3:c.217C>G	p.Arg73Gly	p.R73G	ENST00000336032	NM_006813.2	73	Cgc/Ggc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426526	49426526	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	353	1043	0	ENST00000301067.7:c.11962C>T	p.Gln3988Ter	p.Q3988*	ENST00000301067	NM_003482.3	3988	Cag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499342	89499342	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	166	458	0	ENST00000336596.2:c.2512G>C	p.Asp838His	p.D838H	ENST00000336596	NM_005233.5	838	Gat/Cat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433585	49433585	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	207	1124	0	ENST00000301067.7:c.7968G>T	p.Leu2656Phe	p.L2656F	ENST00000301067	NM_003482.3	2656	ttG/ttT																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892149	9892149	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	57	703	0	ENST00000330684.3:c.2341C>T	p.Gln781Ter	p.Q781*	ENST00000330684	NM_001134407.1	781	Cag/Tag																																																																															
CYLD	1540	MSKCC	GRCh37	16	50816350	50816350	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868852255		P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	16	507	0	ENST00000398568.2:c.1790C>T	p.Ser597Phe	p.S597F	ENST00000398568	NM_001042412.1	597	tCt/tTt																																																																															
CIC	23152	MSKCC	GRCh37	19	42791065	42791065	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	38	591	0	ENST00000575354.2:c.210G>C	p.Gln70His	p.Q70H	ENST00000575354	NM_015125.3	70	caG/caC																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728587	190728587	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747650016		P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	135	651	0	ENST00000441310.2:c.1975G>A	p.Ala659Thr	p.A659T	ENST00000441310	NM_000534.4	659	Gca/Aca																																																																															
CUL3	8452	MSKCC	GRCh37	2	225338972	225338972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	158	448	0	ENST00000264414.4:c.2297A>G	p.Tyr766Cys	p.Y766C	ENST00000264414	NM_003590.4	766	tAt/tGt																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664858	138664858	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	111	216	0	ENST00000330315.3:c.707C>A	p.Pro236His	p.P236H	ENST00000330315	NM_023067.3	236	cCc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55225428	55225428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	172	576	0	ENST00000275493.2:c.1280G>T	p.Arg427Leu	p.R427L	ENST00000275493	NM_005228.3	427	cGc/cTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913386		P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	248	726	0	ENST00000304494.5:c.341C>A	p.Pro114His	p.P114H	ENST00000304494	NM_000077.4	114	cCc/cAc																																																																															
AR	367	MSKCC	GRCh37	X	66765398	66765398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	183	912	0	ENST00000374690.3:c.410C>A	p.Ala137Asp	p.A137D	ENST00000374690	NM_000044.3	137	gCc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0042197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	136	341	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8517973	8517973	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	36	345	0	ENST00000356435.5:c.1418A>T	p.Asp473Val	p.D473V	ENST00000356435		473	gAc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578371	7578371	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0042197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	108	638	0	ENST00000269305.4:c.559G>C	p.Gly187Arg	p.G187R	ENST00000269305	NM_001126112.2	187	Ggt/Cgt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434344	121434344	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0042197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	54	693	1	ENST00000257555.6:c.1108G>T	p.Val370Phe	p.V370F	ENST00000257555		370	Gtc/Ttc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514871	103514871	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	37	406	0	ENST00000355739.4:c.1372G>T	p.Val458Leu	p.V458L	ENST00000355739	NM_000123.3	458	Gta/Tta																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476294	88476294	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	103	634	0	ENST00000360948.2:c.1838T>C	p.Leu613Pro	p.L613P	ENST00000360948	NM_001012338.2	613	cTc/cCc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39550346	39550347	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0042197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	48	319	2	ENST00000262039.4:c.457_458delinsTT	p.Gly153Leu	p.G153L	ENST00000262039	NM_002647.2	153	GGa/TTa																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504363	186504363	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	22	218	0	ENST00000323963.5:c.700C>G	p.Arg234Gly	p.R234G	ENST00000323963		234	Cga/Gga																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751587	57751587	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	37	266	0	ENST00000274289.3:c.1404G>T	p.Met468Ile	p.M468I	ENST00000274289	NM_006622.3	468	atG/atT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412728	63412728	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	60	659	1	ENST00000330258.3:c.439G>T	p.Val147Leu	p.V147L	ENST00000330258	NM_152424.3	147	Gtg/Ttg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123184149	123184149	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	23	237	0	ENST00000218089.9:c.1007T>A	p.Met336Lys	p.M336K	ENST00000218089	NM_001042749.1	336	aTg/aAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0042214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	47	733	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212381	5212381	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372226485		P-0042214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	57	914	1	ENST00000357368.4:c.4736C>T	p.Pro1579Leu	p.P1579L	ENST00000357368	NM_002850.3	1579	cCg/cTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17948865	17948865	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	43	678	0	ENST00000458235.1:c.1577A>G	p.Asn526Ser	p.N526S	ENST00000458235	NM_000215.3	526	aAc/aGc																																																																															
ATR	545	MSKCC	GRCh37	3	142224126	142224126	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1197903798		P-0042214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	49	202	0	ENST00000350721.4:c.5051A>G	p.His1684Arg	p.H1684R	ENST00000350721	NM_001184.3	1684	cAt/cGt																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032237	26032237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	48	290	0	ENST00000244661.2:c.52C>T	p.Arg18Cys	p.R18C	ENST00000244661	NM_003537.3	18	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0042523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	224	696	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	111	354	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0042523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	119	348	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0042587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	85	721	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0042587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	92	859	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0042587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	21	395	0	ENST00000257430.4:c.4391_4394del	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587780074		P-0042611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	388	626	0	ENST00000269305.4:c.737T>C	p.Met246Thr	p.M246T	ENST00000269305	NM_001126112.2	246	aTg/aCg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135779166	135779166	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397514789		P-0042611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	167	409	0	ENST00000298552.3:c.2080C>T	p.Gln694Ter	p.Q694*	ENST00000298552	NM_001162426.1	694	Cag/Tag																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279672	123279672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	201	352	0	ENST00000358487.5:c.760C>T	p.His254Tyr	p.H254Y	ENST00000358487	NM_000141.4	254	Cac/Tac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717325	89717705	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCTGCCACTAGAAGTCTAATTTTGGGACTTACTATTCATGAAATAGGAATTGACTTTTATATAAGTAATAGGACCTTATTTTGAAGGTTCAAACTGGAGAAAATCTTACATTGTTTATATTTTTATTTCATTTATTTCAGTTGATTTGCTTGAGATCAAGATTGCAGATACAGAATCCATATTTCGTGTATATTGCTGATATTAATCATTAAAATCGTTTTTGACAGTTTGACAGTTAAAGGCATTTCCTGTGAAATAATACTGGTATGTATTTAACCATGCAGATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACACGACGGGAAGACAAGTTCATGTACTTTGAGTTCC	CTCTGCCACTAGAAGTCTAATTTTGGGACTTACTATTCATGAAATAGGAATTGACTTTTATATAAGTAATAGGACCTTATTTTGAAGGTTCAAACTGGAGAAAATCTTACATTGTTTATATTTTTATTTCATTTATTTCAGTTGATTTGCTTGAGATCAAGATTGCAGATACAGAATCCATATTTCGTGTATATTGCTGATATTAATCATTAAAATCGTTTTTGACAGTTTGACAGTTAAAGGCATTTCCTGTGAAATAATACTGGTATGTATTTAACCATGCAGATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACACGACGGGAAGACAAGTTCATGTACTTTGAGTTCC	-			P-0042611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2	30	17	0	ENST00000371953.3:c.635-282_733del		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49420640	49420640	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	263	614	0	ENST00000301067.7:c.15109G>T	p.Glu5037Ter	p.E5037*	ENST00000301067	NM_003482.3	5037	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426852	49426853	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0042611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	104	439	0	ENST00000301067.7:c.11635_11636del	p.Leu3880AspfsTer131	p.L3880Dfs*131	ENST00000301067	NM_003482.3	3879	AGt/t																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0042655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	307	832	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934573		P-0042655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	383	707	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404587	8404587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	22	315	0	ENST00000356435.5:c.4160C>T	p.Ala1387Val	p.A1387V	ENST00000356435		1387	gCg/gTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636766	8636766	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776233840		P-0042655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	180	506	0	ENST00000356435.5:c.143C>T	p.Thr48Met	p.T48M	ENST00000356435		48	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	89	603	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	59	504	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396269	139396269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	183	728	0	ENST00000277541.6:c.5569G>T	p.Ala1857Ser	p.A1857S	ENST00000277541	NM_017617.3	1857	Gcc/Tcc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255440	16255440	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	74	513	0	ENST00000375759.3:c.2705A>C	p.Lys902Thr	p.K902T	ENST00000375759	NM_015001.2	902	aAg/aCg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255452	16255452	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	65	519	0	ENST00000375759.3:c.2717A>G	p.Asp906Gly	p.D906G	ENST00000375759	NM_015001.2	906	gAc/gGc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647127	23647127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	100	814	0	ENST00000261584.4:c.740C>T	p.Thr247Ile	p.T247I	ENST00000261584	NM_024675.3	247	aCa/aTa																																																																															
AXL	558	MSKCC	GRCh37	19	41736871	41736871	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	69	657	0	ENST00000301178.4:c.587-1G>T		p.X196_splice	ENST00000301178	NM_021913.4	196																																																																																
MYCN	4613	MSKCC	GRCh37	2	16082274	16082274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	84	832	0	ENST00000281043.3:c.88C>T	p.Pro30Ser	p.P30S	ENST00000281043	NM_005378.4	30	Ccg/Tcg																																																																															
MYD88	4615	MSKCC	GRCh37	3	38180277	38180277	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	38	562	1	ENST00000396334.3:c.125T>A	p.Val42Glu	p.V42E	ENST00000396334	NM_002468.4	42	gTg/gAg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508262	106508262	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	39	381	0	ENST00000359195.3:c.256G>T	p.Asp86Tyr	p.D86Y	ENST00000359195	NM_002649.2	86	Gac/Tac																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53243966	53243966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	85	774	0	ENST00000375401.3:c.1027G>A	p.Asp343Asn	p.D343N	ENST00000375401	NM_004187.3	343	Gat/Aat																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245931	46245931	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	26	409	0	ENST00000334344.6:c.4025A>T	p.Glu1342Val	p.E1342V	ENST00000334344	NM_152641.2	1342	gAa/gTa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245907	46245929	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCATCTGGGAAACAGAACTCA	GAGCATCTGGGAAACAGAACTCA	-			P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	25	374	0	ENST00000334344.6:c.4003_4025del	p.Ala1335ThrfsTer10	p.A1335Tfs*10	ENST00000334344	NM_152641.2	1334	gGAGCATCTGGGAAACAGAACTCA/g																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0042736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	141	381	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8471047	8471047	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201751722		P-0042736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	38	307	0	ENST00000356435.5:c.3452G>A	p.Arg1151His	p.R1151H	ENST00000356435		1151	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591885	48591885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	75	472	0	ENST00000342988.3:c.1048G>T	p.Val350Phe	p.V350F	ENST00000342988	NM_005359.5	350	Gtt/Ttt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984389	201984389	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	111	579	0	ENST00000359651.3:c.1054T>G	p.Tyr352Asp	p.Y352D	ENST00000359651		352	Tac/Gac																																																																															
MET	4233	MSKCC	GRCh37	7	116423444	116423444	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	73	280	0	ENST00000397752.3:c.3719A>G	p.Lys1240Arg	p.K1240R	ENST00000397752	NM_000245.2	1240	aAa/aGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0042863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	99	496	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0042863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	128	961	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
CBL	867	MSKCC	GRCh37	11	119156140	119156140	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	45	774	0	ENST00000264033.4:c.1808del	p.Pro603GlnfsTer12	p.P603Qfs*12	ENST00000264033	NM_005188.3	602	gCc/gc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21636487	21636487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	97	530	0	ENST00000421138.2:c.523G>T	p.Ala175Ser	p.A175S	ENST00000421138		175	Gct/Tct																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120836	115120836	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	44	659	0	ENST00000257566.3:c.170C>A	p.Pro57Gln	p.P57Q	ENST00000257566	NM_016569.3	57	cCg/cAg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88726716	88726716	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	23	552	0	ENST00000360948.2:c.328A>G	p.Ile110Val	p.I110V	ENST00000360948	NM_001012338.2	110	Atc/Gtc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782171	56782171	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	23	451	0	ENST00000308159.5:c.12G>C	p.Glu4Asp	p.E4D	ENST00000308159	NM_014669.4	4	gaG/gaC																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78829286	78829286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	71	634	0	ENST00000306801.3:c.1337G>T	p.Arg446Leu	p.R446L	ENST00000306801	NM_020761.2	446	cGg/cTg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30312990	30312990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	45	619	1	ENST00000262643.3:c.793G>A	p.Val265Met	p.V265M	ENST00000262643	NM_001238.2	265	Gtg/Atg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967305	134967305	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	86	747	0	ENST00000398015.3:c.2644A>C	p.Ile882Leu	p.I882L	ENST00000398015	NM_004441.4	882	Atc/Ctc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31504735	31504735	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	34	537	0	ENST00000344624.3:c.1595A>T	p.Asp532Val	p.D532V	ENST00000344624		532	gAt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577103	7577103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	97	709	0	ENST00000269305.4:c.835G>T	p.Gly279Trp	p.G279W	ENST00000269305	NM_001126112.2	279	Ggg/Tgg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115252318	115252318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	87	285	0	ENST00000369535.4:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000369535	NM_002524.4	108	Gat/Tat																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846309	156846309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	130	688	0	ENST00000524377.1:c.1750C>A	p.Pro584Thr	p.P584T	ENST00000524377	NM_002529.3	584	Ccc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398286	+	missense_variant	Missense_Mutation	DNP	CA	CA	AC			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	77	382	0	ENST00000256078.4:c.33_34delinsGT	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	11	gcTGgt/gcGTgt																																																																															
MDM2	4193	MSKCC	GRCh37	12	69230530	69230531	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	33	270	0	ENST00000462284.1:c.918+2dup		p.X306_splice	ENST00000462284	NM_002392.5	306																																																																																
KNSTRN	90417	MSKCC	GRCh37	15	40675052	40675052	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1418251053		P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	135	606	0	ENST00000249776.8:c.16G>A	p.Ala6Thr	p.A6T	ENST00000249776	NM_033286.3	6	Gcc/Acc																																																																															
CD276	80381	MSKCC	GRCh37	15	73992010	73992010	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	186	772	1	ENST00000318443.5:c.30G>T	p.Met10Ile	p.M10I	ENST00000318443	NM_001024736.1	10	atG/atT																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17384795	17384795	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	179	692	0	ENST00000359435.4:c.427G>T	p.Glu143Ter	p.E143*	ENST00000359435	NM_001033549.1	143	Gag/Tag																																																																															
ALK	238	MSKCC	GRCh37	2	29450526	29450526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	114	591	0	ENST00000389048.3:c.2828C>A	p.Ala943Asp	p.A943D	ENST00000389048	NM_004304.4	943	gCc/gAc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39750370	39750370	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	71	305	0	ENST00000361337.2:c.1985G>T	p.Arg662Leu	p.R662L	ENST00000361337	NM_003286.2	662	cGg/cTg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46256711	46256711	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	110	416	0	ENST00000371998.3:c.767G>C	p.Gly256Ala	p.G256A	ENST00000371998		256	gGa/gCa																																																																															
TP63	8626	MSKCC	GRCh37	3	189604307	189604307	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	43	379	0	ENST00000264731.3:c.1474C>G	p.Pro492Ala	p.P492A	ENST00000264731	NM_003722.4	492	Cct/Gct																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509931	187509931	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	68	293	0	ENST00000441802.2:c.13582G>T	p.Glu4528Ter	p.E4528*	ENST00000441802	NM_005245.3	4528	Gag/Tag																																																																															
RAD50	10111	MSKCC	GRCh37	5	131895012	131895012	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	79	287	0	ENST00000265335.6:c.166G>T	p.Asp56Tyr	p.D56Y	ENST00000265335		56	Gat/Tat																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93953221	93953221	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	67	351	0	ENST00000369303.4:c.2920C>G	p.Gln974Glu	p.Q974E	ENST00000369303	NM_004440.3	974	Caa/Gaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931878	68931878	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	212	541	0	ENST00000288368.4:c.308A>T	p.Gln103Leu	p.Q103L	ENST00000288368	NM_024870.2	103	cAa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0042878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	130	591	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409089	139409089	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs79782048		P-0042878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	176	804	0	ENST00000277541.6:c.2080G>A	p.Glu694Lys	p.E694K	ENST00000277541	NM_017617.3	694	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248980	55248981	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	TCCAGGAAGCCT			P-0042878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	176	463	0	ENST00000275493.2:c.2284-5_2290dup		p.X762_splice	ENST00000275493	NM_005228.3	762																																																																																
AR	367	MSKCC	GRCh37	X	66863172	66863172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	157	481	0	ENST00000374690.3:c.1691G>A	p.Gly564Glu	p.G564E	ENST00000374690	NM_000044.3	564	gGa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0043018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	505	883	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248980	55248981	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	TCCAGGAAGCAT			P-0043018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	435	711	0	ENST00000275493.2:c.2288_2289insATTCCAGGAAGC		p.X763_splice	ENST00000275493	NM_005228.3	763																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	444	1090	0	ENST00000269305.4:c.853G>T	p.Glu285Ter	p.E285*	ENST00000269305	NM_001126112.2	285	Gag/Tag																																																																															
BRAF	673	MSKCC	GRCh37	7	140439637	140439637	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	47	243	0	ENST00000288602.6:c.2102G>C	p.Arg701Thr	p.R701T	ENST00000288602	NM_004333.4	701	aGa/aCa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444900	49444900	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	271	1056	0	ENST00000301067.7:c.2566G>C	p.Glu856Gln	p.E856Q	ENST00000301067	NM_003482.3	856	Gag/Cag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262429	16262429	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	70	569	0	ENST00000375759.3:c.9694G>T	p.Glu3232Ter	p.E3232*	ENST00000375759	NM_015001.2	3232	Gaa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097608	27097608	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	88	613	0	ENST00000324856.7:c.3199-2A>G		p.X1067_splice	ENST00000324856	NM_006015.4	1067																																																																																
MYCL	4610	MSKCC	GRCh37	1	40363281	40363281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	226	918	0	ENST00000397332.2:c.948C>A	p.His316Gln	p.H316Q	ENST00000397332	NM_001033082.2	316	caC/caA																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115269651	115269651	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	90	370	0	ENST00000438362.2:c.1555C>G	p.Gln519Glu	p.Q519E	ENST00000438362	NM_001242891.1	519	Caa/Gaa																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154851	2154851	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	151	1115	0	ENST00000434045.2:c.370G>C	p.Glu124Gln	p.E124Q	ENST00000434045	NM_001127598.1	124	Gag/Cag																																																																															
RECQL	5965	MSKCC	GRCh37	12	21643300	21643300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	77	237	0	ENST00000421138.2:c.227C>T	p.Ser76Phe	p.S76F	ENST00000421138		76	tCt/tTt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88690608	88690608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	122	589	1	ENST00000360948.2:c.422C>A	p.Thr141Lys	p.T141K	ENST00000360948	NM_001012338.2	141	aCa/aAa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16012115	16012115	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	94	240	0	ENST00000268712.3:c.2167C>G	p.Pro723Ala	p.P723A	ENST00000268712	NM_006311.3	723	Cca/Gca																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170540	11170540	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	252	1076	1	ENST00000344626.4:c.4747G>T	p.Glu1583Ter	p.E1583*	ENST00000344626	NM_003072.3	1583	Gag/Tag																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086074	16086074	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	152	786	0	ENST00000281043.3:c.1250C>A	p.Ala417Asp	p.A417D	ENST00000281043	NM_005378.4	417	gCc/gAc																																																																															
ALK	238	MSKCC	GRCh37	2	29445423	29445423	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	150	1083	0	ENST00000389048.3:c.3410G>C	p.Gly1137Ala	p.G1137A	ENST00000389048	NM_004304.4	1137	gGa/gCa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99189277	99189277	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	167	598	0	ENST00000074304.5:c.2534-1G>A		p.X845_splice	ENST00000074304	NM_001134224.1	845																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89468539	89468539	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	30	190	0	ENST00000336596.2:c.2073A>C	p.Lys691Asn	p.K691N	ENST00000336596	NM_005233.5	691	aaA/aaC																																																																															
KIT	3815	MSKCC	GRCh37	4	55561781	55561781	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs755092278		P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	167	495	0	ENST00000288135.5:c.171A>T	p.Leu57Phe	p.L57F	ENST00000288135	NM_000222.2	57	ttA/ttT																																																																															
KDR	3791	MSKCC	GRCh37	4	55955970	55955970	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	117	326	0	ENST00000263923.4:c.3193-1G>T		p.X1065_splice	ENST00000263923	NM_002253.2	1065																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66286187	66286187	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	43	171	0	ENST00000273854.3:c.1499T>A	p.Leu500Gln	p.L500Q	ENST00000273854	NM_004439.5	500	cTa/cAa																																																																															
MSH3	4437	MSKCC	GRCh37	5	80064788	80064788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	40	141	0	ENST00000265081.6:c.2219C>T	p.Pro740Leu	p.P740L	ENST00000265081	NM_002439.4	740	cCt/cTt																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778161	27778161	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	111	1040	0	ENST00000369163.2:c.310C>A	p.Leu104Ile	p.L104I	ENST00000369163	NM_003536.2	104	Ctc/Atc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946188	13946188	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	99	487	0	ENST00000405192.2:c.908G>C	p.Gly303Ala	p.G303A	ENST00000405192	NM_001163147.1	303	gGa/gCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273126	55273126	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745321541		P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	334	910	0	ENST00000275493.2:c.3449C>T	p.Thr1150Ile	p.T1150I	ENST00000275493	NM_005228.3	1150	aCa/aTa																																																																															
HGF	3082	MSKCC	GRCh37	7	81381567	81381567	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	37	175	0	ENST00000222390.5:c.494C>A	p.Ser165Ter	p.S165*	ENST00000222390	NM_000601.4	165	tCg/tAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460511	8460511	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1213689339		P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	213	634	0	ENST00000356435.5:c.3775C>A	p.Pro1259Thr	p.P1259T	ENST00000356435		1259	Cca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0043078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	376	794	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266224	198266224	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	168	372	0	ENST00000335508.6:c.2396A>G	p.Asp799Gly	p.D799G	ENST00000335508	NM_012433.2	799	gAt/gGt																																																																															
ARAF	369	MSKCC	GRCh37	X	47429415	47429415	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs969755578		P-0043078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	112	518	0	ENST00000377045.4:c.1543C>T	p.Arg515Cys	p.R515C	ENST00000377045	NM_001654.4	515	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	10	346	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	24	641	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579357	7579358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGAAAC	rs1131691004		P-0043150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	428	906	0	ENST00000269305.4:c.323_329dup	p.Leu111PhefsTer40	p.L111Ffs*40	ENST00000269305	NM_001126112.2	110	cgt/cgGTTTCCGt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545662	106545662	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1262374005		P-0043150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	178	571	0	ENST00000359195.3:c.3139G>A	p.Asp1047Asn	p.D1047N	ENST00000359195	NM_002649.2	1047	Gac/Aac																																																																															
CASP8	841	MSKCC	GRCh37	2	202149974	202149974	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1301592633		P-0043150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	212	676	0	ENST00000358485.4:c.1415G>A	p.Arg472Gln	p.R472Q	ENST00000358485	NM_001080125.1	472	cGa/cAa																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46546324	46546324	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	118	343	1	ENST00000262741.5:c.205del	p.Asp69IlefsTer7	p.D69Ifs*7	ENST00000262741	NM_003629.3	69	Gat/at																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619374	1619374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753007864		P-0043150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	266	1032	0	ENST00000344749.5:c.1267G>A	p.Gly423Arg	p.G423R	ENST00000344749	NM_001136139.2	423	Ggg/Agg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465333	120465333	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs891328437		P-0043150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	164	566	0	ENST00000256646.2:c.4928C>T	p.Thr1643Met	p.T1643M	ENST00000256646	NM_024408.3	1643	aCg/aTg																																																																															
STK40	83931	MSKCC	GRCh37	1	36807484	36807484	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	222	924	0	ENST00000373129.3:c.1180G>C	p.Asp394His	p.D394H	ENST00000373129	NM_032017.1	394	Gac/Cac																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46546344	46546368	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTGAAGAGAAACAGAACTGTCCT	TCCTGAAGAGAAACAGAACTGTCCT	-			P-0043150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	124	395	0	ENST00000262741.5:c.161_185del	p.Lys54MetfsTer14	p.K54Mfs*14	ENST00000262741	NM_003629.3	54	aAGGACAGTTCTGTTTCTCTTCAGGAt/at																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7989403	7989403	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	495	957	0	ENST00000319144.4:c.283C>G	p.Arg95Gly	p.R95G	ENST00000319144	NM_001139.2	95	Cgt/Ggt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527512	157527512	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	149	590	0	ENST00000346085.5:c.5237A>C	p.Glu1746Ala	p.E1746A	ENST00000346085	NM_020732.3	1746	gAg/gCg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370702	55370702	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	141	679	0	ENST00000297316.4:c.4A>G	p.Ser2Gly	p.S2G	ENST00000297316	NM_022454.3	2	Agc/Ggc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48651685	48651685	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	251	782	0	ENST00000376670.3:c.851T>G	p.Leu284Arg	p.L284R	ENST00000376670	NM_002049.3	284	cTc/cGc																																																																															
ATRX	546	MSKCC	GRCh37	X	76764063	76764063	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	172	596	0	ENST00000373344.5:c.7245G>C	p.Gln2415His	p.Q2415H	ENST00000373344	NM_000489.3	2415	caG/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0043155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	27	906	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0043155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	75	473	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
TSC1	7248	MSKCC	GRCh37	9	135802635	135802635	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs118203343		P-0043155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	16	363	0	ENST00000298552.3:c.163C>T	p.Gln55Ter	p.Q55*	ENST00000298552	NM_001162426.1	55	Cag/Tag																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023133	33023133	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	59	593	0	ENST00000300177.4:c.242del	p.Leu81ArgfsTer3	p.L81Rfs*3	ENST00000300177	NM_001191322.1	81	cTg/cg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401285	139401285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	34	976	1	ENST00000277541.6:c.3784G>A	p.Glu1262Lys	p.E1262K	ENST00000277541	NM_017617.3	1262	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	214	565	0	ENST00000206249.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000206249	NM_000125.3	536	cTc/cCc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572185	64572185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	208	501	1	ENST00000337652.1:c.1469G>A	p.Arg490Gln	p.R490Q	ENST00000337652	NM_130803.2	490	cGg/cAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220410	1220410	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	283	727	0	ENST00000326873.7:c.503A>T	p.His168Leu	p.H168L	ENST00000326873	NM_000455.4	168	cAt/cTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023247	27023265	+	frameshift_variant	Frame_Shift_Del	DEL	CGGAGCCGCCCGGCGGCGG	CGGAGCCGCCCGGCGGCGG	-			P-0043203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	106	209	0	ENST00000324856.7:c.356_374del	p.Glu119ValfsTer107	p.E119Vfs*107	ENST00000324856	NM_006015.4	118	aCGGAGCCGCCCGGCGGCGGc/ac																																																																															
MGA	23269	MSKCC	GRCh37	15	42042409	42042425	+	frameshift_variant	Frame_Shift_Del	DEL	ATTAAAGAAACAAAGAC	ATTAAAGAAACAAAGAC	-			P-0043203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	211	620	0	ENST00000219905.7:c.6606_6622del	p.Ile2202MetfsTer16	p.I2202Mfs*16	ENST00000219905	NM_001164273.1	2202	ATTAAAGAAACAAAGACa/a																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011125	12011133	+	inframe_deletion	In_Frame_Del	DEL	ATGGAACTC	ATGGAACTC	-			P-0043203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	84	401	0	ENST00000353533.5:c.535_543del	p.Glu179_Met181del	p.E179_M181del	ENST00000353533	NM_003010.3	178	ATGGAACTC/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	93	404	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0043242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	89	678	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463317	25463317	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0043242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	41	491	0	ENST00000264709.3:c.2176G>T	p.Gly726Cys	p.G726C	ENST00000264709	NM_175629.2	726	Ggc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108151830	108151830	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876659067		P-0043242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	36	480	0	ENST00000278616.4:c.3511C>T	p.Gln1171Ter	p.Q1171*	ENST00000278616	NM_000051.3	1171	Cag/Tag																																																																															
WT1	7490	MSKCC	GRCh37	11	32438066	32438066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	54	569	0	ENST00000332351.3:c.971G>A	p.Ser324Asn	p.S324N	ENST00000332351	NM_024426.4	324	aGc/aAc																																																																															
YAP1	10413	MSKCC	GRCh37	11	102056816	102056817	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0043242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	52	471	0	ENST00000282441.5:c.756_757delinsTT	p.Lys252_Asn253delinsAsnTyr	p.K252_N253delinsNY	ENST00000282441	NM_001130145.2	252	aaGAac/aaTTac																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804278	46804278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	144	711	0	ENST00000290295.7:c.729G>T	p.Lys243Asn	p.K243N	ENST00000290295	NM_006361.5	243	aaG/aaT																																																																															
BARD1	580	MSKCC	GRCh37	2	215674166	215674166	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1060501305		P-0043242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	73	596	0	ENST00000260947.4:c.128G>T	p.Arg43Leu	p.R43L	ENST00000260947	NM_000465.2	43	cGc/cTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1255441	1255442	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0043242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	209	658	3	ENST00000310581.5:c.3117_3118delinsTT	p.Ala1040Ser	p.A1040S	ENST00000310581	NM_198253.2	1039	acGGcc/acTTcc																																																																															
HGF	3082	MSKCC	GRCh37	7	81388081	81388081	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	41	469	0	ENST00000222390.5:c.294G>C	p.Trp98Cys	p.W98C	ENST00000222390	NM_000601.4	98	tgG/tgC																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106522638	106522638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	34	358	0	ENST00000359195.3:c.2615C>A	p.Thr872Asn	p.T872N	ENST00000359195	NM_002649.2	872	aCt/aAt																																																																															
CD274	29126	MSKCC	GRCh37	9	5457346	5457346	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	23	271	0	ENST00000381577.3:c.320A>G	p.Gln107Arg	p.Q107R	ENST00000381577	NM_014143.3	107	cAg/cGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0043245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	95	355	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0043245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	62	424	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
GNA11	2767	MSKCC	GRCh37	19	3115012	3115012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	449	797	1	ENST00000078429.4:c.547C>T	p.Arg183Cys	p.R183C	ENST00000078429	NM_002067.2	183	Cgc/Tgc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123211855	123211855	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	151	144	0	ENST00000218089.9:c.2722A>G	p.Arg908Gly	p.R908G	ENST00000218089	NM_001042749.1	908	Agg/Ggg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0043530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	408	537	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31376727	31376727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	156	379	0	ENST00000328111.2:c.722C>T	p.Ala241Val	p.A241V	ENST00000328111	NM_006892.3	241	gCc/gTc																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778167	27778167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	364	501	0	ENST00000369163.2:c.316G>A	p.Glu106Lys	p.E106K	ENST00000369163	NM_003536.2	106	Gag/Aag																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68353890	68353890	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	286	332	0	ENST00000487270.1:c.725T>C	p.Leu242Ser	p.L242S	ENST00000487270	NM_133509.3	242	tTg/tCg																																																																															
RET	5979	MSKCC	GRCh37	10	43606777	43606777	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	372	612	0	ENST00000355710.3:c.1389del	p.Ile464SerfsTer4	p.I464Sfs*4	ENST00000355710	NM_020975.4	462	tcG/tc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281417	49281417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	392	532	0	ENST00000282018.3:c.464C>T	p.Ala155Val	p.A155V	ENST00000282018	NM_020377.2	155	gCc/gTc																																																																															
ALK	238	MSKCC	GRCh37	2	29519776	29519776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	32	427	0	ENST00000389048.3:c.1795C>T	p.Pro599Ser	p.P599S	ENST00000389048	NM_004304.4	599	Cct/Tct																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164478	47164478	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	240	236	0	ENST00000409792.3:c.1648A>T	p.Ser550Cys	p.S550C	ENST00000409792	NM_014159.6	550	Agt/Tgt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157511345	157511345	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0043530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	84	311	0	ENST00000346085.5:c.3862+1G>T		p.X1288_splice	ENST00000346085	NM_020732.3	1288																																																																																
FGFR1	2260	MSKCC	GRCh37	8	38274930	38274930	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	37	514	0	ENST00000425967.3:c.1650C>G	p.Asp550Glu	p.D550E	ENST00000425967	NM_001174067.1	550	gaC/gaG																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970913	21970913	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	486	546	0	ENST00000304494.5:c.445del	p.Glu149LysfsTer44	p.E149Kfs*44	ENST00000304494	NM_000077.4	149	Gaa/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	21	262	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923601	39923601	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	51	240	0	ENST00000378444.4:c.3490C>T	p.Arg1164Ter	p.R1164*	ENST00000378444	NM_001123385.1	1164	Cga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1221236	1221236	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	58	476	0	ENST00000326873.7:c.762del	p.Phe255SerfsTer32	p.F255Sfs*32	ENST00000326873	NM_000455.4	253	taC/ta																																																																															
RARA	5914	MSKCC	GRCh37	17	38487541	38487541	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	51	437	1	ENST00000254066.5:c.71A>G	p.Tyr24Cys	p.Y24C	ENST00000254066	NM_000964.3	24	tAc/tGc																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652202	36652203	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0043573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	61	496	0	ENST00000244741.5:c.325dup	p.Asp109GlyfsTer20	p.D109Gfs*20	ENST00000244741	NM_000389.4	108	-/G																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	343	364	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647077	23647077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	295	739	0	ENST00000261584.4:c.790C>T	p.His264Tyr	p.H264Y	ENST00000261584	NM_024675.3	264	Cac/Tac																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987179	36987193	+	inframe_deletion	In_Frame_Del	DEL	CATGCCGCTCATGTT	CATGCCGCTCATGTT	-			P-0043625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	223	699	0	ENST00000354822.5:c.496_510del	p.Asn166_Met170del	p.N166_M170del	ENST00000354822	NM_001079668.2	166	AACATGAGCGGCATG/-																																																																															
MDM2	4193	MSKCC	GRCh37	12	69222648	69222668	+	inframe_deletion	In_Frame_Del	DEL	AATAAGGGAGATATGTTGTGA	AATAAGGGAGATATGTTGTGA	-			P-0043625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	260	535	2	ENST00000462284.1:c.623_643del	p.Ile208_Glu214del	p.I208_E214del	ENST00000462284	NM_002392.5	207	gtAATAAGGGAGATATGTTGTGAa/gta																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892221	9892221	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	236	544	1	ENST00000330684.3:c.2269G>T	p.Ala757Ser	p.A757S	ENST00000330684	NM_001134407.1	757	Gcc/Tcc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59821927	59821927	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	163	324	1	ENST00000259008.2:c.2123G>T	p.Trp708Leu	p.W708L	ENST00000259008	NM_032043.2	708	tGg/tTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599904	10599904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	353	747	0	ENST00000171111.5:c.1672G>C	p.Gly558Arg	p.G558R	ENST00000171111	NM_203500.1	558	Ggg/Cgg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198285857	198285857	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0043625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	190	347	0	ENST00000335508.6:c.196G>T	p.Asp66Tyr	p.D66Y	ENST00000335508	NM_012433.2	66	Gat/Tat																																																																															
ETV1	2115	MSKCC	GRCh37	7	13940450	13940450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	134	234	0	ENST00000405192.2:c.1056G>T	p.Trp352Cys	p.W352C	ENST00000405192	NM_001163147.1	352	tgG/tgT																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729544	41729544	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	226	558	0	ENST00000242208.4:c.985A>G	p.Ser329Gly	p.S329G	ENST00000242208	NM_002192.2	329	Agt/Ggt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970978	21970986	+	inframe_deletion	In_Frame_Del	DEL	GCGACATCG	GCGACATCG	-			P-0043625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	234	541	0	ENST00000304494.5:c.372_380del	p.Asp125_Ala127del	p.D125_A127del	ENST00000304494	NM_000077.4	124	cgCGATGTCGCa/cga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045137	47045137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	277	330	0	ENST00000329236.7:c.2144G>T	p.Arg715Leu	p.R715L	ENST00000329236	NM_001204466.1	715	cGa/cTa																																																																															
RIT1	6016	MSKCC	GRCh37	1	155880288	155880288	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	34	348	0	ENST00000368323.3:c.116T>A	p.Met39Lys	p.M39K	ENST00000368323	NM_006912.5	39	aTg/aAg																																																																															
PARP1	142	MSKCC	GRCh37	1	226567635	226567635	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	61	447	0	ENST00000366794.5:c.1531G>T	p.Val511Phe	p.V511F	ENST00000366794	NM_001618.3	511	Gtc/Ttc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793370	18793370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	118	321	0	ENST00000266497.5:c.4067C>A	p.Pro1356Gln	p.P1356Q	ENST00000266497		1356	cCa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	179	280	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MGA	23269	MSKCC	GRCh37	15	42019455	42019455	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	28	523	0	ENST00000219905.7:c.3508G>T	p.Glu1170Ter	p.E1170*	ENST00000219905	NM_001164273.1	1170	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	50	833	0	ENST00000269305.4:c.434T>A	p.Leu145Gln	p.L145Q	ENST00000269305	NM_001126112.2	145	cTg/cAg																																																																															
INSR	3643	MSKCC	GRCh37	19	7172442	7172442	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	31	388	0	ENST00000302850.5:c.1127A>G	p.Asn376Ser	p.N376S	ENST00000302850	NM_000208.2	376	aAt/aGt																																																																															
ALK	238	MSKCC	GRCh37	2	29551252	29551252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	46	568	0	ENST00000389048.3:c.1378G>T	p.Asp460Tyr	p.D460Y	ENST00000389048	NM_004304.4	460	Gac/Tac																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42840337	42840337	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	27	377	0	ENST00000398585.3:c.1411G>T	p.Val471Phe	p.V471F	ENST00000398585	NM_001135099.1	471	Gtc/Ttc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160566	56160566	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs925876038		P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	26	200	0	ENST00000399503.3:c.840G>C	p.Gln280His	p.Q280H	ENST00000399503	NM_005921.1	280	caG/caC																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730091	41730091	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	26	400	0	ENST00000242208.4:c.438C>A	p.Asp146Glu	p.D146E	ENST00000242208	NM_002192.2	146	gaC/gaA																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106515231	106515231	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	34	269	0	ENST00000359195.3:c.2374A>T	p.Lys792Ter	p.K792*	ENST00000359195	NM_002649.2	792	Aaa/Taa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	30	375	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	41	755	0	ENST00000329236.7:c.1459+1G>T		p.X487_splice	ENST00000329236	NM_001204466.1	487																																																																																
MED12	9968	MSKCC	GRCh37	X	70356759	70356759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	33	641	1	ENST00000374080.3:c.5431C>A	p.Pro1811Thr	p.P1811T	ENST00000374080		1811	Cct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	370	347	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577098	7577098	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	287	634	0	ENST00000269305.4:c.840A>T	p.Arg280Ser	p.R280S	ENST00000269305	NM_001126112.2	280	agA/agT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106424	27106424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	115	492	0	ENST00000324856.7:c.6035G>A	p.Gly2012Asp	p.G2012D	ENST00000324856	NM_006015.4	2012	gGc/gAc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860150	57860151	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0043822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	230	558	0	ENST00000228682.2:c.891_892del	p.Lys299AlafsTer7	p.K299Afs*7	ENST00000228682	NM_005269.2	297	gGC/g																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40375523	40375523	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	319	553	0	ENST00000293328.3:c.427C>T	p.Gln143Ter	p.Q143*	ENST00000293328	NM_012448.3	143	Cag/Tag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688810	47688810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	194	303	1	ENST00000347630.2:c.490G>A	p.Val164Met	p.V164M	ENST00000347630	NM_001007230.1	164	Gtg/Atg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119803	70119803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	116	519	1	ENST00000245479.2:c.805G>A	p.Asp269Asn	p.D269N	ENST00000245479	NM_000346.3	269	Gac/Aac																																																																															
SDHA	6389	MSKCC	GRCh37	5	240505	240505	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	25	66	0	ENST00000264932.6:c.1465G>C	p.Gly489Arg	p.G489R	ENST00000264932	NM_004168.2	489	Ggg/Cgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	90	283	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	279	539	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	44	316	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231437	46231437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	86	307	0	ENST00000334344.6:c.1277C>T	p.Thr426Met	p.T426M	ENST00000334344	NM_152641.2	426	aCg/aTg																																																																															
B2M	567	MSKCC	GRCh37	15	45007834	45007834	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	109	313	0	ENST00000558401.1:c.285del	p.Asp96MetfsTer7	p.D96Mfs*7	ENST00000558401	NM_004048.2	94	gAa/ga																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156834552	156834552	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs540521894		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	153	683	2	ENST00000524377.1:c.320C>T	p.Ala107Val	p.A107V	ENST00000524377	NM_002529.3	107	gCg/gTg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206649640	206649640	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782100237		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	151	601	0	ENST00000367120.3:c.475G>A	p.Gly159Ser	p.G159S	ENST00000367120	NM_014002.3	159	Ggc/Agc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	34	189	0	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434545	121434545	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1343874863		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	159	682	0	ENST00000257555.6:c.1309G>A	p.Gly437Ser	p.G437S	ENST00000257555		437	Ggc/Agc																																																																															
TET2	54790	MSKCC	GRCh37	4	106197506	106197506	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	33	308	0	ENST00000380013.4:c.5844del	p.Val1949Ter	p.V1949*	ENST00000380013	NM_001127208.2	1947	Aaa/aa																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	163	642	2	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs769210858		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	151	579	1	ENST00000361632.4:c.1404del	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89693003	89693003	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	31	271	0	ENST00000371953.3:c.491del	p.Lys164ArgfsTer3	p.K164Rfs*3	ENST00000371953	NM_000314.4	163	Aaa/aa																																																																															
ATRX	546	MSKCC	GRCh37	X	76939417	76939417	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781932965		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	88	562	0	ENST00000373344.5:c.1331G>A	p.Arg444Gln	p.R444Q	ENST00000373344	NM_000489.3	444	cGa/cAa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099332	157099333	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA	rs780268024		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	26	249	0	ENST00000346085.5:c.285_287dup	p.His96dup	p.H96dup	ENST00000346085	NM_020732.3	96	gcc/gcCCAc																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872461	35872461	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	111	518	1	ENST00000216797.5:c.442del	p.Leu148TyrfsTer16	p.L148Yfs*16	ENST00000216797	NM_020529.2	148	Cta/ta																																																																															
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	108	310	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	130	410	1	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885939	111885939	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	122	509	3	ENST00000341259.2:c.1566del	p.Glu523SerfsTer25	p.E523Sfs*25	ENST00000341259	NM_005475.2	521	Ccc/cc																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226253371	226253371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	81	189	0	ENST00000366813.1:c.143C>T	p.Ala48Val	p.A48V	ENST00000366813		48	gCg/gTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106197443	106197443	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1452689450		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	68	292	1	ENST00000380013.4:c.5776C>T	p.Arg1926Cys	p.R1926C	ENST00000380013	NM_001127208.2	1926	Cgt/Tgt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400212	139400212	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	121	572	0	ENST00000277541.6:c.4136del	p.Thr1379ArgfsTer66	p.T1379Rfs*66	ENST00000277541	NM_017617.3	1379	aCg/ag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954273	32954273	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1253685848		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	104	350	0	ENST00000380152.3:c.9253del	p.Thr3085GlnfsTer19	p.T3085Qfs*19	ENST00000380152		3083	Aaa/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023831	27023831	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1415214478		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	44	215	2	ENST00000324856.7:c.941del	p.Gly314AlafsTer49	p.G314Afs*49	ENST00000324856	NM_006015.4	313	Ggg/gg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214706	5214706	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1457749790		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	58	566	0	ENST00000357368.4:c.4360G>A	p.Gly1454Ser	p.G1454S	ENST00000357368	NM_002850.3	1454	Ggc/Agc																																																																															
CDH1	999	MSKCC	GRCh37	16	68862157	68862157	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776975632		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	116	506	1	ENST00000261769.5:c.2245C>T	p.Arg749Trp	p.R749W	ENST00000261769	NM_004360.3	749	Cgg/Tgg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	169	443	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2096133	2096133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1041413378		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	139	527	0	ENST00000219066.1:c.374del	p.Pro125GlnfsTer12	p.P125Qfs*12	ENST00000219066	NM_002528.5	125	cCa/ca																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116173	209116173	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781398075		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	114	255	0	ENST00000345146.2:c.103G>A	p.Val35Met	p.V35M	ENST00000345146	NM_005896.2	35	Gtg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	153	669	5	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166014	118166014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	119	378	2	ENST00000369448.3:c.524G>A	p.Arg175His	p.R175H	ENST00000369448	NM_017709.3	175	cGt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223328	36223328	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	153	714	2	ENST00000222270.7:c.5882del	p.Pro1961LeufsTer26	p.P1961Lfs*26	ENST00000222270	NM_014727.1	1960	Ccc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435279	49435279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181521514		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	167	617	1	ENST00000301067.7:c.6274G>A	p.Asp2092Asn	p.D2092N	ENST00000301067	NM_003482.3	2092	Gac/Aac																																																																															
TEK	7010	MSKCC	GRCh37	9	27185545	27185545	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	102	585	1	ENST00000380036.4:c.1250del	p.Pro417LeufsTer10	p.P417Lfs*10	ENST00000380036	NM_000459.3	415	ctC/ct																																																																															
FLT1	2321	MSKCC	GRCh37	13	28896488	28896488	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376257265		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	51	339	0	ENST00000282397.4:c.2962G>A	p.Gly988Ser	p.G988S	ENST00000282397	NM_002019.4	988	Ggt/Agt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522590	176522590	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765924274		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	137	576	1	ENST00000292408.4:c.1687C>T	p.Arg563Trp	p.R563W	ENST00000292408	NM_213647.1	563	Cgg/Tgg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518270	8518270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs556357771		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	86	293	1	ENST00000356435.5:c.1121C>T	p.Ala374Val	p.A374V	ENST00000356435		374	gCg/gTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210704	5210704	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766174955		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	131	562	0	ENST00000357368.4:c.5347C>T	p.Arg1783Trp	p.R1783W	ENST00000357368	NM_002850.3	1783	Cgg/Tgg																																																																															
CIC	23152	MSKCC	GRCh37	19	42798428	42798428	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	39	650	1	ENST00000575354.2:c.4303del	p.Asp1435ThrfsTer19	p.D1435Tfs*19	ENST00000575354	NM_015125.3	1433	gaG/ga																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243502	41243502	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80357345		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	139	544	2	ENST00000357654.3:c.4046C>T	p.Thr1349Met	p.T1349M	ENST00000357654	NM_007294.3	1349	aCg/aTg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741475	17741475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769475374		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	53	433	1	ENST00000250003.3:c.146G>A	p.Arg49His	p.R49H	ENST00000250003	NM_002478.4	49	cGc/cAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98221972	98221972	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373120584		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	118	444	0	ENST00000331920.6:c.2797G>A	p.Ala933Thr	p.A933T	ENST00000331920	NM_000264.3	933	Gcg/Acg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141566042	141566042	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1460562478		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	115	437	0	ENST00000220592.5:c.1222G>A	p.Val408Met	p.V408M	ENST00000220592	NM_012154.3	408	Gtg/Atg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31464401	31464401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	168	598	1	ENST00000344624.3:c.2516C>T	p.Thr839Met	p.T839M	ENST00000344624		839	aCg/aTg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62319093	62319093	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs786205700		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	154	657	0	ENST00000482936.1:c.1451C>T	p.Pro484Leu	p.P484L	ENST00000482936		484	cCg/cTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29652947	29652947	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770124316		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	112	332	0	ENST00000358273.4:c.4945G>A	p.Gly1649Arg	p.G1649R	ENST00000358273	NM_001042492.2	1649	Ggg/Agg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789582	3789582	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145988918		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	88	359	0	ENST00000262367.5:c.4277C>T	p.Thr1426Met	p.T1426M	ENST00000262367	NM_004380.2	1426	aCg/aTg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191229	185191229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	114	415	0	ENST00000265026.3:c.2110G>A	p.Ala704Thr	p.A704T	ENST00000265026	NM_004721.4	704	Gct/Act																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880980	134880980	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771555643		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	130	469	0	ENST00000398015.3:c.1543G>A	p.Gly515Ser	p.G515S	ENST00000398015	NM_004441.4	515	Ggc/Agc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120094	70120094	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	14	41	1	ENST00000245479.2:c.1100del	p.Pro367HisfsTer16	p.P367Hfs*16	ENST00000245479	NM_000346.3	366	Ccc/cc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23614974	23614974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757118000		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	35	345	0	ENST00000261584.4:c.3367G>A	p.Val1123Met	p.V1123M	ENST00000261584	NM_024675.3	1123	Gtg/Atg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41199717	41199717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	133	517	0	ENST00000357654.3:c.5410G>A	p.Val1804Ile	p.V1804I	ENST00000357654	NM_007294.3	1804	Gtc/Atc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435309	110435309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	56	145	1	ENST00000375856.3:c.3092C>T	p.Pro1031Leu	p.P1031L	ENST00000375856	NM_003749.2	1031	cCg/cTg																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345989	152345989	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775565256		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	121	404	0	ENST00000359321.1:c.581C>T	p.Thr194Met	p.T194M	ENST00000359321	NM_005431.1	194	aCg/aTg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701243	43701243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769912966		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	108	481	0	ENST00000382044.4:c.5452C>T	p.Arg1818Trp	p.R1818W	ENST00000382044	NM_001141980.1	1818	Cgg/Tgg																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246091262	246091262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	53	420	2	ENST00000388985.4:c.673G>A	p.Ala225Thr	p.A225T	ENST00000388985		225	Gca/Aca																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71945420	71945420	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	149	541	0	ENST00000298229.2:c.2308T>C	p.Tyr770His	p.Y770H	ENST00000298229	NM_001567.3	770	Tac/Cac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118363829	118363830	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	131	445	0	ENST00000534358.1:c.5067dup	p.Glu1690ArgfsTer4	p.E1690Rfs*4	ENST00000534358	NM_005933.3	1688	tcc/tCcc																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50481152	50481152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	57	313	1	ENST00000394963.4:c.538C>T	p.Arg180Trp	p.R180W	ENST00000394963	NM_003076.4	180	Cgg/Tgg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107968	30107968	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757900101		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	144	495	1	ENST00000331968.5:c.839G>A	p.Arg280Gln	p.R280Q	ENST00000331968	NM_002742.2	280	cGg/cAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89371693	89371693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	150	650	0	ENST00000301030.4:c.147G>T	p.Lys49Asn	p.K49N	ENST00000301030	NM_001256183.1	49	aaG/aaT																																																																															
FANCA	2175	MSKCC	GRCh37	16	89882978	89882978	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs943773590		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	38	146	0	ENST00000389301.3:c.46G>A	p.Gly16Arg	p.G16R	ENST00000389301	NM_000135.2	16	Ggg/Agg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110899	8110899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756175507		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	148	536	2	ENST00000585124.1:c.196G>A	p.Asp66Asn	p.D66N	ENST00000585124	NM_004217.3	66	Gac/Aac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37884146	37884146	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	102	589	0	ENST00000269571.5:c.3617A>G	p.Gln1206Arg	p.Q1206R	ENST00000269571		1206	cAg/cGg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492691	56492694	+	frameshift_variant	Frame_Shift_Del	DEL	ATTA	ATTA	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	248	335	0	ENST00000407977.2:c.245_248del	p.Leu82CysfsTer75	p.L82Cfs*75	ENST00000407977		82	tTAATg/tg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530041	63530041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	269	349	0	ENST00000307078.5:c.2394G>T	p.Lys798Asn	p.K798N	ENST00000307078	NM_004655.3	798	aaG/aaT																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622192	1622192	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	91	578	0	ENST00000344749.5:c.683G>A	p.Trp228Ter	p.W228*	ENST00000344749	NM_001136139.2	228	tGg/tAg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375321	15375321	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1475673288		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	84	550	0	ENST00000263377.2:c.1106A>G	p.His369Arg	p.H369R	ENST00000263377	NM_058243.2	369	cAc/cGc																																																																															
ALK	238	MSKCC	GRCh37	2	29445454	29445454	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	48	492	0	ENST00000389048.3:c.3379T>A	p.Phe1127Ile	p.F1127I	ENST00000389048	NM_004304.4	1127	Ttt/Att																																																																															
MSH2	4436	MSKCC	GRCh37	2	47643538	47643538	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587779067		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	138	443	0	ENST00000233146.2:c.1046C>G	p.Pro349Arg	p.P349R	ENST00000233146	NM_000251.2	349	cCt/cGt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61710179	61710181	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs1164883486		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	98	295	0	ENST00000401558.2:c.2723_2725del	p.Glu908del	p.E908del	ENST00000401558	NM_003400.3	908	gAAGct/gct																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84390197	84390197	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	54	338	0	ENST00000321945.7:c.584T>C	p.Val195Ala	p.V195A	ENST00000321945	NM_139076.2	195	gTa/gCa																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99850060	99850060	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1299361080		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	37	569	0	ENST00000280892.6:c.64A>G	p.Ser22Gly	p.S22G	ENST00000280892	NM_001130678.1	22	Agc/Ggc																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858208	27858208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	115	463	0	ENST00000359303.2:c.363G>A	p.Met121Ile	p.M121I	ENST00000359303	NM_003535.2	121	atG/atA																																																																															
AGO2	27161	MSKCC	GRCh37	8	141559308	141559309	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	148	549	0	ENST00000220592.5:c.1492dup	p.Ala498GlyfsTer176	p.A498Gfs*176	ENST00000220592	NM_012154.3	498	gcg/gGcg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8517865	8517865	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	74	248	0	ENST00000356435.5:c.1526T>C	p.Val509Ala	p.V509A	ENST00000356435		509	gTc/gCc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044906	47044907	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	110	699	0	ENST00000329236.7:c.2003dup	p.Glu670Ter	p.E670*	ENST00000329236	NM_001204466.1	666	-/G																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177866	56177869	+	frameshift_variant	Frame_Shift_Del	DEL	ACAA	ACAA	GAG			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	96	345	1	ENST00000399503.3:c.2839_2842delinsGAG	p.Thr947GlufsTer21	p.T947Efs*21	ENST00000399503	NM_005921.1	947	ACAAca/GAGca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	64	274	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	251	833	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121082	11121082	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	211	621	0	ENST00000344626.4:c.2149G>T	p.Glu717Ter	p.E717*	ENST00000344626	NM_003072.3	717	Gaa/Taa																																																																															
ATRX	546	MSKCC	GRCh37	X	76890135	76890135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	81	454	0	ENST00000373344.5:c.4759G>T	p.Gly1587Cys	p.G1587C	ENST00000373344	NM_000489.3	1587	Ggt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105841	27105841	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	45	494	0	ENST00000324856.7:c.5452C>G	p.Gln1818Glu	p.Q1818E	ENST00000324856	NM_006015.4	1818	Cag/Gag																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39321574	39321574	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs779725644		P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	27	271	0	ENST00000373001.3:c.447C>G	p.Asp149Glu	p.D149E	ENST00000373001	NM_022157.3	149	gaC/gaG																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14303232	14303232	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	56	540	0	ENST00000256196.4:c.443A>G	p.Gln148Arg	p.Q148R	ENST00000256196		148	cAg/cGg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913075	32913075	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	87	445	0	ENST00000380152.3:c.4583G>T	p.Ser1528Ile	p.S1528I	ENST00000380152		1528	aGc/aTc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435010	110435010	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	129	745	0	ENST00000375856.3:c.3391C>G	p.Arg1131Gly	p.R1131G	ENST00000375856	NM_003749.2	1131	Cgc/Ggc																																																																															
NF1	4763	MSKCC	GRCh37	17	29663667	29663667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	26	233	0	ENST00000358273.4:c.6162G>A	p.Met2054Ile	p.M2054I	ENST00000358273	NM_001042492.2	2054	atG/atA																																																																															
CASP8	841	MSKCC	GRCh37	2	202149735	202149735	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	90	544	0	ENST00000358485.4:c.1176C>G	p.Ile392Met	p.I392M	ENST00000358485	NM_001080125.1	392	atC/atG																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71037198	71037198	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	81	370	0	ENST00000318789.4:c.1093A>C	p.Met365Leu	p.M365L	ENST00000318789	NM_032682.5	365	Atg/Ctg																																																																															
ATR	545	MSKCC	GRCh37	3	142177942	142177942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	21	281	0	ENST00000350721.4:c.7361G>T	p.Arg2454Ile	p.R2454I	ENST00000350721	NM_001184.3	2454	aGa/aTa																																																																															
ATRX	546	MSKCC	GRCh37	X	76875958	76875958	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	55	249	0	ENST00000373344.5:c.5177A>T	p.Asn1726Ile	p.N1726I	ENST00000373344	NM_000489.3	1726	aAt/aTt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771658	135771658	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	39	495	0	ENST00000298552.3:c.3459C>G	p.Ile1153Met	p.I1153M	ENST00000298552	NM_001162426.1	1153	atC/atG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	47	358	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220469	1220469	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	125	646	0	ENST00000326873.7:c.563del	p.Gly188AlafsTer99	p.G188Afs*99	ENST00000326873	NM_000455.4	188	Ggc/gc																																																																															
CDK6	1021	MSKCC	GRCh37	7	92247520	92247520	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs902137115		P-0043993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	53	265	0	ENST00000265734.4:c.700G>A	p.Val234Met	p.V234M	ENST00000265734	NM_001259.6	234	Gtg/Atg																																																																															
ATM	472	MSKCC	GRCh37	11	108127041	108127041	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0043993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	60	386	0	ENST00000278616.4:c.2224A>T	p.Lys742Ter	p.K742*	ENST00000278616	NM_000051.3	742	Aag/Tag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654655	67654655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	101	473	1	ENST00000264010.4:c.1142G>T	p.Cys381Phe	p.C381F	ENST00000264010	NM_006565.3	381	tGc/tTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610368	10610369	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0043993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	175	784	1	ENST00000171111.5:c.341_342delinsTT	p.Gly114Val	p.G114V	ENST00000171111	NM_203500.1	114	gGG/gTT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187515	32187515	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1470084434		P-0043993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	154	725	0	ENST00000375023.3:c.1364C>T	p.Thr455Ile	p.T455I	ENST00000375023	NM_004557.3	455	aCt/aTt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2956969	2956969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	114	707	2	ENST00000396946.4:c.2658C>A	p.Ser886Arg	p.S886R	ENST00000396946	NM_032415.4	886	agC/agA																																																																															
LYN	4067	MSKCC	GRCh37	8	56912096	56912096	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	99	513	0	ENST00000519728.1:c.1324A>G	p.Ile442Val	p.I442V	ENST00000519728	NM_002350.3	442	Att/Gtt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038821	47038821	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	154	780	1	ENST00000329236.7:c.597C>A	p.Tyr199Ter	p.Y199*	ENST00000329236	NM_001204466.1	199	taC/taA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0044006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	47	230	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876658468		P-0044006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	54	417	0	ENST00000269305.4:c.577C>G	p.His193Asp	p.H193D	ENST00000269305	NM_001126112.2	193	Cat/Gat																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115931	8115931	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	52	331	0	ENST00000346208.3:c.1277C>G	p.Ser426Cys	p.S426C	ENST00000346208		426	tCc/tGc																																																																															
RET	5979	MSKCC	GRCh37	10	43596043	43596043	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	68	453	0	ENST00000355710.3:c.210G>T	p.Gln70His	p.Q70H	ENST00000355710	NM_020975.4	70	caG/caT																																																																															
ATM	472	MSKCC	GRCh37	11	108137938	108137938	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	51	268	0	ENST00000278616.4:c.2507A>T	p.Glu836Val	p.E836V	ENST00000278616	NM_000051.3	836	gAa/gTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447392	49447392	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	83	483	0	ENST00000301067.7:c.706G>C	p.Gly236Arg	p.G236R	ENST00000301067	NM_003482.3	236	Ggg/Cgg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88428923	88428923	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0044006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	45	280	0	ENST00000360948.2:c.2175+2T>A		p.X725_splice	ENST00000360948	NM_001012338.2	725																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72992747	72992747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	84	464	0	ENST00000268489.5:c.1298G>T	p.Gly433Val	p.G433V	ENST00000268489	NM_006885.3	433	gGc/gTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223301	36223301	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	38	702	0	ENST00000222270.7:c.5851C>G	p.Leu1951Val	p.L1951V	ENST00000222270	NM_014727.1	1951	Ctc/Gtc																																																																															
RRAS	6237	MSKCC	GRCh37	19	50139896	50139896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	88	573	0	ENST00000246792.3:c.433G>A	p.Asp145Asn	p.D145N	ENST00000246792	NM_006270.3	145	Gat/Aat																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683635	162683635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	46	327	2	ENST00000366898.1:c.334C>T	p.Leu112Phe	p.L112F	ENST00000366898	NM_004562.2	112	Ctc/Ttc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1325339	1325339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	36	279	0	ENST00000381566.1:c.336G>T	p.Trp112Cys	p.W112C	ENST00000381566		112	tgG/tgT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0044021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	189	607	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602872	10602872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	174	855	0	ENST00000171111.5:c.706G>A	p.Asp236Asn	p.D236N	ENST00000171111	NM_203500.1	236	Gac/Aac																																																																															
APC	324	MSKCC	GRCh37	5	112136975	112136975	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0044021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	30	258	0	ENST00000257430.4:c.730-1G>C		p.X244_splice	ENST00000257430	NM_000038.5	244																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153247174	153247174	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	14	238	0	ENST00000281708.4:c.1628G>C	p.Arg543Thr	p.R543T	ENST00000281708	NM_033632.3	543	aGa/aCa																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8075404	8075404	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	33	257	0	ENST00000377482.5:c.166C>G	p.Leu56Val	p.L56V	ENST00000377482	NM_018948.3	56	Ctg/Gtg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246099	41246099	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	11	507	0	ENST00000357654.3:c.1449A>G	p.Ile483Met	p.I483M	ENST00000357654	NM_007294.3	483	atA/atG																																																																															
AXL	558	MSKCC	GRCh37	19	41744488	41744488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	125	762	0	ENST00000301178.4:c.1108G>T	p.Ala370Ser	p.A370S	ENST00000301178	NM_021913.4	370	Gcg/Tcg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139794970	139794970	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0044021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	106	520	0	ENST00000247668.2:c.364G>A	p.Glu122Lys	p.E122K	ENST00000247668	NM_021138.3	122	Gag/Aag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	306	583	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0044064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	201	457	2	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
ATM	472	MSKCC	GRCh37	11	108175549	108175549	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786204433		P-0044064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	155	407	1	ENST00000278616.4:c.5644C>T	p.Arg1882Ter	p.R1882*	ENST00000278616	NM_000051.3	1882	Cga/Tga																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570326	95570326	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	145	312	0	ENST00000343455.3:c.3407G>T	p.Gly1136Val	p.G1136V	ENST00000343455	NM_177438.2	1136	gGt/gTt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983283	15983284	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GATAGAGC			P-0044064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	60	371	0	ENST00000268712.3:c.3488_3495dup	p.Thr1166AlafsTer21	p.T1166Afs*21	ENST00000268712	NM_006311.3	1165	-/GCTCTATC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539205	187539205	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	65	404	0	ENST00000441802.2:c.8535G>C	p.Met2845Ile	p.M2845I	ENST00000441802	NM_005245.3	2845	atG/atC																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29207500	29207500	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs757228799		P-0044064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	121	450	0	ENST00000240100.2:c.296C>G	p.Ser99Cys	p.S99C	ENST00000240100	NM_001394.6	99	tCc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs770776262		P-0044179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	534	936	0	ENST00000269305.4:c.321C>A	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taA																																																																															
NF1	4763	MSKCC	GRCh37	17	29654553	29654553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876657714		P-0044179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	148	322	0	ENST00000358273.4:c.5305C>T	p.Arg1769Ter	p.R1769*	ENST00000358273	NM_001042492.2	1769	Cga/Tga																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797519	45797519	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0044306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	85	702	0	ENST00000372115.3:c.958C>T	p.Pro320Ser	p.P320S	ENST00000372115	NM_001048171.1	320	Ccc/Tcc																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733608	85733608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	90	437	0	ENST00000370580.1:c.404G>T	p.Arg135Ile	p.R135I	ENST00000370580	NM_003921.4	135	aGa/aTa																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154380	2154380	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1191719522		P-0044306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	93	771	0	ENST00000434045.2:c.548G>A	p.Arg183His	p.R183H	ENST00000434045	NM_001127598.1	183	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	87	395	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602662	10602662	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1457377196		P-0044306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	181	719	0	ENST00000171111.5:c.916G>T	p.Glu306Ter	p.E306*	ENST00000171111	NM_203500.1	306	Gag/Tag																																																																															
MED12	9968	MSKCC	GRCh37	X	70342587	70342587	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0044306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	109	531	0	ENST00000374080.3:c.1349-1G>T		p.X450_splice	ENST00000374080		450																																																																																
SH2D1A	4068	MSKCC	GRCh37	X	123499636	123499637	+	missense_variant	Missense_Mutation	DNP	CG	CG	AT			P-0044306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	127	537	2	ENST00000371139.4:c.163_164delinsAT	p.Arg55Ile	p.R55I	ENST00000371139	NM_001114937.2	55	CGa/ATa																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152861629	152861629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	40	625	0	ENST00000406277.2:c.123G>A	p.Met41Ile	p.M41I	ENST00000406277	NM_152274.4	41	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501191		P-0044387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	282	578	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249017	55249018	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0044387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	890	539	0	ENST00000275493.2:c.2317_2319dup	p.His773dup	p.H773dup	ENST00000275493	NM_005228.3	773	ccc/ccCCAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346723	89346723	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768819121		P-0044387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	87	508	2	ENST00000301030.4:c.6227C>T	p.Pro2076Leu	p.P2076L	ENST00000301030	NM_001256183.1	2076	cCg/cTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039903	47039903	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0044387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	1110	318	0	ENST00000329236.7:c.1012C>T	p.Gln338Ter	p.Q338*	ENST00000329236	NM_001204466.1	338	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221946	1221946	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0044408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	426	703	0	ENST00000326873.7:c.863-2A>C		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																																
INPP4A	3631	MSKCC	GRCh37	2	99180014	99180014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	282	635	0	ENST00000074304.5:c.1957G>T	p.Val653Leu	p.V653L	ENST00000074304	NM_001134224.1	653	Gta/Tta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	96	447	1	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
SDHB	6390	MSKCC	GRCh37	1	17380492	17380492	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199848267		P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	230	907	0	ENST00000375499.3:c.23C>T	p.Ser8Phe	p.S8F	ENST00000375499	NM_003000.2	8	tCc/tTc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332196	70332196	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759674654		P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	69	372	0	ENST00000373644.4:c.101C>T	p.Ala34Val	p.A34V	ENST00000373644	NM_030625.2	34	gCc/gTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11129670	11129670	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	387	779	0	ENST00000344626.4:c.2476G>C	p.Ala826Pro	p.A826P	ENST00000344626	NM_003072.3	826	Gcc/Ccc																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363643	40363643	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	97	384	0	ENST00000397332.2:c.587-1G>C		p.X196_splice	ENST00000397332	NM_001033082.2	196																																																																																
FGF3	2248	MSKCC	GRCh37	11	69633671	69633671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	16	30	0	ENST00000334134.2:c.31C>A	p.Leu11Met	p.L11M	ENST00000334134	NM_005247.2	11	Ctg/Atg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56477657	56477657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	166	645	1	ENST00000267101.3:c.205G>A	p.Gly69Arg	p.G69R	ENST00000267101	NM_001982.3	69	Gga/Aga																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432090	121432090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	177	873	1	ENST00000257555.6:c.837C>A	p.His279Gln	p.H279Q	ENST00000257555		279	caC/caA																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829543	72829543	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	342	628	0	ENST00000268489.5:c.7038C>G	p.His2346Gln	p.H2346Q	ENST00000268489	NM_006885.3	2346	caC/caG																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872751	136872751	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	94	474	0	ENST00000241393.3:c.747C>G	p.Phe249Leu	p.F249L	ENST00000241393	NM_003467.2	249	ttC/ttG																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419918	41419918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	259	618	0	ENST00000373198.4:c.403G>T	p.Val135Leu	p.V135L	ENST00000373198	NM_133170.3	135	Gtg/Ttg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259476	89259476	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	363	499	0	ENST00000336596.2:c.620A>C	p.Lys207Thr	p.K207T	ENST00000336596	NM_005233.5	207	aAg/aCg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400286	139400286	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	398	877	0	ENST00000277541.6:c.4062C>G	p.Ser1354Arg	p.S1354R	ENST00000277541	NM_017617.3	1354	agC/agG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0044496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	110	442	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604789	48604789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	84	366	1	ENST00000342988.3:c.1611C>A	p.Asp537Glu	p.D537E	ENST00000342988	NM_005359.5	537	gaC/gaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578209	7578209	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	132	758	0	ENST00000269305.4:c.640C>G	p.His214Asp	p.H214D	ENST00000269305	NM_001126112.2	214	Cat/Gat																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0044648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	74	556	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
NF1	4763	MSKCC	GRCh37	17	29559852	29559852	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0044657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	132	294	0	ENST00000358273.4:c.3449C>G	p.Ser1150Ter	p.S1150*	ENST00000358273	NM_001042492.2	1150	tCa/tGa																																																																															
KDR	3791	MSKCC	GRCh37	4	55955063	55955063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	74	472	0	ENST00000263923.4:c.3482G>A	p.Gly1161Glu	p.G1161E	ENST00000263923	NM_002253.2	1161	gGa/gAa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459498	50459498	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777862077		P-0044657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	43	267	1	ENST00000331340.3:c.787G>A	p.Val263Met	p.V263M	ENST00000331340	NM_006060.4	263	Gtg/Atg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132610	11132610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	372	817	0	ENST00000344626.4:c.2826G>T	p.Trp942Cys	p.W942C	ENST00000344626	NM_003072.3	942	tgG/tgT																																																																															
SOS1	6654	MSKCC	GRCh37	2	39278395	39278395	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	46	492	0	ENST00000402219.2:c.754A>G	p.Ile252Val	p.I252V	ENST00000402219	NM_005633.3	252	Ata/Gta																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873193	136873193	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	67	332	2	ENST00000241393.3:c.305G>C	p.Trp102Ser	p.W102S	ENST00000241393	NM_003467.2	102	tGg/tCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0044696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	73	708	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0044696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	464	669	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs28934873		P-0044696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	18	849	0	ENST00000269305.4:c.398T>C	p.Met133Thr	p.M133T	ENST00000269305	NM_001126112.2	133	aTg/aCg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023157	31023157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	100	595	0	ENST00000375687.4:c.2642G>A	p.Arg881Lys	p.R881K	ENST00000375687	NM_015338.5	881	aGa/aAa																																																																															
RB1	5925	MSKCC	GRCh37	13	48955544	48955544	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	13	353	0	ENST00000267163.4:c.1660G>T	p.Glu554Ter	p.E554*	ENST00000267163	NM_000321.2	554	Gaa/Taa																																																																															
CDK8	1024	MSKCC	GRCh37	13	26959378	26959378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	69	342	0	ENST00000381527.3:c.545C>T	p.Ser182Leu	p.S182L	ENST00000381527	NM_001260.1	182	tCa/tTa																																																																															
MET	4233	MSKCC	GRCh37	7	116380140	116380140	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0044696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	90	559	0	ENST00000397752.3:c.1527+2T>A		p.X509_splice	ENST00000397752	NM_000245.2	509																																																																																
AMER1	139285	MSKCC	GRCh37	X	63411303	63411303	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	158	811	1	ENST00000330258.3:c.1864G>T	p.Glu622Ter	p.E622*	ENST00000330258	NM_152424.3	622	Gag/Tag																																																																															
MED12	9968	MSKCC	GRCh37	X	70349271	70349271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	167	726	0	ENST00000374080.3:c.3683T>A	p.Phe1228Tyr	p.F1228Y	ENST00000374080		1228	tTt/tAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0044703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	154	599	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460515	149460515	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777239066		P-0044703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	115	651	1	ENST00000286301.3:c.122G>A	p.Arg41Gln	p.R41Q	ENST00000286301	NM_005211.3	41	cGa/cAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024029	27024030	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	A			P-0044703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	58	72	0	ENST00000324856.7:c.1136dup	p.Pro380AlafsTer20	p.P380Afs*20	ENST00000324856	NM_006015.4	379	cag/cAag																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14629152	14629152	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	118	428	0	ENST00000254322.2:c.10G>C	p.Asp4His	p.D4H	ENST00000254322	NM_006145.1	4	Gac/Cac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0044757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	218	755	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243673	41243673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	70	643	0	ENST00000357654.3:c.3875C>T	p.Ser1292Phe	p.S1292F	ENST00000357654	NM_007294.3	1292	tCt/tTt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95583985	95583985	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	98	367	0	ENST00000343455.3:c.1483G>C	p.Glu495Gln	p.E495Q	ENST00000343455	NM_177438.2	495	Gaa/Caa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467808	50467808	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	172	643	0	ENST00000331340.3:c.1043del	p.Tyr348SerfsTer67	p.Y348Sfs*67	ENST00000331340	NM_006060.4	348	tAc/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0044827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	199	486	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633625	69633625	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782733556		P-0044827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	54	59	0	ENST00000334134.2:c.77G>A	p.Arg26Gln	p.R26Q	ENST00000334134	NM_005247.2	26	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175707	112175707	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	96	284	0	ENST00000257430.4:c.4418del	p.Asn1473MetfsTer34	p.N1473Mfs*34	ENST00000257430	NM_000038.5	1472	gtA/gt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729447	41729447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	224	576	0	ENST00000242208.4:c.1082C>T	p.Thr361Met	p.T361M	ENST00000242208	NM_002192.2	361	aCg/aTg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749198	43749198	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	181	555	0	ENST00000382044.4:c.1608G>C	p.Leu536Phe	p.L536F	ENST00000382044	NM_001141980.1	536	ttG/ttC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0044912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	81	601	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
STK11	6794	MSKCC	GRCh37	19	1219336	1219336	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	71	609	0	ENST00000326873.7:c.388G>T	p.Glu130Ter	p.E130*	ENST00000326873	NM_000455.4	130	Gag/Tag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478817	56478817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	76	580	0	ENST00000267101.3:c.273G>A	p.Met91Ile	p.M91I	ENST00000267101	NM_001982.3	91	atG/atA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916924	178916924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225060		P-0044912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	37	355	0	ENST00000263967.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000263967	NM_006218.2	104	cCa/cTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27059176	27059176	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	32	301	0	ENST00000324856.7:c.1813C>T	p.Gln605Ter	p.Q605*	ENST00000324856	NM_006015.4	605	Caa/Taa																																																																															
RHOA	387	MSKCC	GRCh37	3	49400062	49400062	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	T			P-0044912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	44	323	0	ENST00000418115.1:c.278-3C>A		p.X93_splice	ENST00000418115	NM_001664.2	93																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602565	10602565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	75	663	0	ENST00000171111.5:c.1013C>T	p.Ser338Leu	p.S338L	ENST00000171111	NM_203500.1	338	tCg/tTg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736307	243736307	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	67	382	0	ENST00000263826.5:c.740G>T	p.Arg247Leu	p.R247L	ENST00000263826	NM_005465.4	247	cGc/cTc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998247	100998247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	27	270	0	ENST00000325455.5:c.1555G>T	p.Gly519Trp	p.G519W	ENST00000325455	NM_001202474.3	519	Ggg/Tgg																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348912	11348912	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs765480579		P-0044912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	41	436	0	ENST00000332029.2:c.424G>C	p.Glu142Gln	p.E142Q	ENST00000332029	NM_003745.1	142	Gag/Cag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55136864	55136864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	31	365	0	ENST00000257290.5:c.1186G>A	p.Ala396Thr	p.A396T	ENST00000257290	NM_006206.4	396	Gct/Act																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31409173	31409173	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	47	384	0	ENST00000344624.3:c.3844C>G	p.Pro1282Ala	p.P1282A	ENST00000344624		1282	Cct/Gct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0044954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	66	147	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SMO	6608	MSKCC	GRCh37	7	128829039	128829040	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs570242755		P-0044954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	16	8	0	ENST00000249373.3:c.67_69dup	p.Leu23dup	p.L23dup	ENST00000249373	NM_005631.4	23	ggg/ggGCTg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988204	36988204	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	55	163	0	ENST00000354822.5:c.449del	p.Pro150ArgfsTer16	p.P150Rfs*16	ENST00000354822	NM_001079668.2	150	cCg/cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	38	394	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	131	830	0	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175956173	175956173	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	28	296	0	ENST00000367669.3:c.2039T>G	p.Phe680Cys	p.F680C	ENST00000367669	NM_022457.5	680	tTt/tGt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987053	36987054	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0045018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	121	591	0	ENST00000354822.5:c.635_636del	p.Gln212ProfsTer226	p.Q212Pfs*226	ENST00000354822	NM_001079668.2	212	cAA/c																																																																															
MET	4233	MSKCC	GRCh37	7	116340111	116340111	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	22	244	0	ENST00000397752.3:c.973C>G	p.Pro325Ala	p.P325A	ENST00000397752	NM_000245.2	325	Cct/Gct																																																																															
JAK2	3717	MSKCC	GRCh37	9	5044411	5044411	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	36	375	0	ENST00000381652.3:c.359T>A	p.Phe120Tyr	p.F120Y	ENST00000381652	NM_004972.3	120	tTt/tAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923390	9923390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	142	582	0	ENST00000330684.3:c.1897G>C	p.Val633Leu	p.V633L	ENST00000330684	NM_001134407.1	633	Gta/Cta																																																																															
TP53	7157	MSKCC	GRCh37	17	7574026	7574026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	325	684	1	ENST00000269305.4:c.1001G>T	p.Gly334Val	p.G334V	ENST00000269305	NM_001126112.2	334	gGg/gTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123836	46123837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	20	337	1	ENST00000334344.6:c.109dup	p.Ile37AsnfsTer29	p.I37Nfs*29	ENST00000334344	NM_152641.2	34	-/A																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023203	33023203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	88	409	0	ENST00000300177.4:c.312C>A	p.His104Gln	p.H104Q	ENST00000300177	NM_001191322.1	104	caC/caA																																																																															
YES1	7525	MSKCC	GRCh37	18	743261	743261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	119	529	0	ENST00000314574.4:c.879G>T	p.Met293Ile	p.M293I	ENST00000314574	NM_005433.3	293	atG/atT																																																																															
BARD1	580	MSKCC	GRCh37	2	215632297	215632297	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	45	530	0	ENST00000260947.4:c.1477C>T	p.Gln493Ter	p.Q493*	ENST00000260947	NM_000465.2	493	Caa/Taa																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114594	73114594	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	57	212	0	ENST00000356692.5:c.975A>T	p.Gln325His	p.Q325H	ENST00000356692		325	caA/caT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	79	354	0	ENST00000263967.3:c.3012G>C	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atC																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523157	176523157	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	219	827	0	ENST00000292408.4:c.1921G>C	p.Asp641His	p.D641H	ENST00000292408	NM_213647.1	641	Gac/Cac																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146087	38146087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	220	768	0	ENST00000317025.8:c.3419C>A	p.Thr1140Lys	p.T1140K	ENST00000317025	NM_023034.1	1140	aCa/aAa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971045	21971054	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGCCGCGC	CCAGCCGCGC	-			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	274	700	0	ENST00000304494.5:c.304_313del	p.Ala102ThrfsTer41	p.A102Tfs*41	ENST00000304494	NM_000077.4	102	GCGCGGCTGGac/ac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041009	47041009	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	160	929	1	ENST00000329236.7:c.1305G>T	p.Glu435Asp	p.E435D	ENST00000329236	NM_001204466.1	435	gaG/gaT																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152864490	152864490	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	13	42	0	ENST00000406277.2:c.38G>C	p.Arg13Pro	p.R13P	ENST00000406277	NM_152274.4	13	cGg/cCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	29	411	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416459	49416459	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	881	522	0	ENST00000301067.7:c.16252G>C	p.Glu5418Gln	p.E5418Q	ENST00000301067	NM_003482.3	5418	Gaa/Caa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176015365	176015370	+	inframe_deletion	In_Frame_Del	DEL	ACTGCA	ACTGCA	-			P-0048438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	23	215	0	ENST00000367669.3:c.1368_1373del	p.Asp456_Val458delinsGlu	p.D456_V458delinsE	ENST00000367669	NM_022457.5	456	gaTGCAGTg/gag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416616	49416616	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	692	412	0	ENST00000301067.7:c.16095G>C	p.Gln5365His	p.Q5365H	ENST00000301067	NM_003482.3	5365	caG/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs786201838		P-0054111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	82	767	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242483	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACA	AATTAAGAGAAGCAACA	TTGCT			P-0054111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	43	437	3	ENST00000275493.2:c.2237_2253delinsTTGCT	p.Glu746_Thr751delinsValAla	p.E746_T751delinsVA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACA/gTTGCT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0056733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	305	368	3	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0056733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	137	227	3	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0056733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	392	1134	1	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	19	538	2	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																																																															
SETD8	387893	MSKCC	GRCh37	12	123874011	123874013	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs780061449		P-0056733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	12	62	0	ENST00000330479.4:c.62_64del	p.Ala21del	p.A21del	ENST00000330479	NM_020382.3	14	gaGGCg/gag																																																																															
APC	324	MSKCC	GRCh37	5	112175802	112175802	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	112	308	1	ENST00000257430.4:c.4512del	p.Ser1505AlafsTer2	p.S1505Afs*2	ENST00000257430	NM_000038.5	1504	tCc/tc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348031	348031	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765982081		P-0056733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	432	1248	9	ENST00000262320.3:c.1475G>A	p.Arg492His	p.R492H	ENST00000262320	NM_003502.3	492	cGc/cAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	359972	359972	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0056733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	317	904	3	ENST00000262320.3:c.1116+1G>T		p.X372_splice	ENST00000262320	NM_003502.3	372																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	84	268	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	64	279	3	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120173	70120173	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	114	396	1	ENST00000245479.2:c.1177del	p.Gln393SerfsTer10	p.Q393Sfs*10	ENST00000245479	NM_000346.3	392	tCc/tc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165213	47165213	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	69	240	0	ENST00000409792.3:c.913del	p.Thr305GlnfsTer35	p.T305Qfs*35	ENST00000409792	NM_014159.6	305	Aca/ca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952086	178952086	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	57	254	0	ENST00000263967.3:c.3141T>A	p.His1047Gln	p.H1047Q	ENST00000263967	NM_006218.2	1047	caT/caA																																																																															
AXIN1	8312	MSKCC	GRCh37	16	339452	339452	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	164	661	0	ENST00000262320.3:c.2450del	p.Lys817ArgfsTer11	p.K817Rfs*11	ENST00000262320	NM_003502.3	817	aAg/ag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	188	730	1	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971195	13971195	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777866452		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	88	387	0	ENST00000405192.2:c.734C>T	p.Ala245Val	p.A245V	ENST00000405192	NM_001163147.1	245	gCg/gTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521114	187521114	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760053140		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	136	410	0	ENST00000441802.2:c.12041C>T	p.Thr4014Met	p.T4014M	ENST00000441802	NM_005245.3	4014	aCg/aTg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78919545	78919545	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776174012		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	130	398	0	ENST00000306801.3:c.3104C>T	p.Thr1035Met	p.T1035M	ENST00000306801	NM_020761.2	1035	aCg/aTg																																																																															
RB1	5925	MSKCC	GRCh37	13	49027168	49027168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913305		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	70	313	0	ENST00000267163.4:c.1735C>T	p.Arg579Ter	p.R579*	ENST00000267163	NM_000321.2	579	Cga/Tga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	85	358	7	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	157	543	8	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427491	427491	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774366438		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	58	489	0	ENST00000399788.2:c.2678G>A	p.Arg893Gln	p.R893Q	ENST00000399788	NM_001042603.1	893	cGa/cAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	110	373	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831357	72831358	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTG	rs552138038		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	48	386	2	ENST00000268489.5:c.5221_5223dup	p.Gln1741dup	p.Q1741dup	ENST00000268489	NM_006885.3	1741	-/CAA																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	95	374	7	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
AXL	558	MSKCC	GRCh37	19	41743896	41743896	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	201	812	2	ENST00000301178.4:c.836del	p.Pro279GlnfsTer18	p.P279Qfs*18	ENST00000301178	NM_021913.4	277	gaC/ga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	109	370	0	ENST00000447079.4:c.4382del	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348566	89348568	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-	rs753054998		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	29	789	2	ENST00000301030.4:c.4382_4384del	p.Lys1461del	p.K1461del	ENST00000301030	NM_001256183.1	1461	aAGAga/aga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435815	56435815	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755967475		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	106	479	0	ENST00000407977.2:c.1322del	p.Pro441LeufsTer61	p.P441Lfs*61	ENST00000407977		441	cCt/ct																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354393	354393	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1488869543		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	178	656	1	ENST00000262320.3:c.1165G>A	p.Ala389Thr	p.A389T	ENST00000262320	NM_003502.3	389	Gcg/Acg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	113	456	1	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	172	423	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	118	401	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268098	153268098	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	88	223	2	ENST00000281708.4:c.710G>A	p.Trp237Ter	p.W237*	ENST00000281708	NM_033632.3	237	tGg/tAg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562744	21562744	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1442338961		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	86	227	0	ENST00000382592.4:c.1175C>T	p.Ala392Val	p.A392V	ENST00000382592	NM_014572.2	392	gCg/gTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686293	30686294	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	105	294	0	ENST00000359013.4:c.227_228del	p.Cys76Ter	p.C76*	ENST00000359013	NM_001024847.2	75	cTG/c																																																																															
RET	5979	MSKCC	GRCh37	10	43601944	43601944	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1172318035		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	149	784	1	ENST00000355710.3:c.988C>T	p.Arg330Trp	p.R330W	ENST00000355710	NM_020975.4	330	Cgg/Tgg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245584	41245584	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	159	601	0	ENST00000357654.3:c.1964A>G	p.Tyr655Cys	p.Y655C	ENST00000357654	NM_007294.3	655	tAc/tGc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925402	114925402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs768101780		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	165	624	1	ENST00000543371.1:c.1485del	p.Ser496ProfsTer5	p.S496Pfs*5	ENST00000543371	NM_001198531.1	494	Ccc/cc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850820	63850820	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746755575		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	76	382	0	ENST00000279873.7:c.1598C>T	p.Ala533Val	p.A533V	ENST00000279873	NM_032199.2	533	gCg/gTg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999104	100999104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779926918		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	103	578	0	ENST00000325455.5:c.698C>T	p.Ala233Val	p.A233V	ENST00000325455	NM_001202474.3	233	gCg/gTg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99180099	99180099	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs746971958		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	117	429	0	ENST00000074304.5:c.2042C>T	p.Thr681Met	p.T681M	ENST00000074304	NM_001134224.1	681	aCg/aTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448297	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	183	622	2	ENST00000407977.2:c.350del	p.Arg117ProfsTer41	p.R117Pfs*41	ENST00000407977		117	cGc/cc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857769	9857769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	27	516	0	ENST00000330684.3:c.3632C>T	p.Ser1211Phe	p.S1211F	ENST00000330684	NM_001134407.1	1211	tCc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112090706	112090706	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	67	167	0	ENST00000257430.4:c.119A>G	p.Glu40Gly	p.E40G	ENST00000257430	NM_000038.5	40	gAg/gGg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151960210	151960210	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761700904		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	18	136	1	ENST00000262189.6:c.1190C>T	p.Ser397Leu	p.S397L	ENST00000262189	NM_170606.2	397	tCg/tTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542746	187542746	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761417017		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	115	323	1	ENST00000441802.2:c.4994C>T	p.Pro1665Leu	p.P1665L	ENST00000441802	NM_005245.3	1665	cCg/cTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106197471	106197471	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	52	255	1	ENST00000380013.4:c.5804A>G	p.Tyr1935Cys	p.Y1935C	ENST00000380013	NM_001127208.2	1935	tAt/tGt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323266	31323266	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	87	305	0	ENST00000412585.2:c.723G>A	p.Trp241Ter	p.W241*	ENST00000412585	NM_005514.6	241	tgG/tgA																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589652	67589652	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1383740979		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	55	148	1	ENST00000274335.5:c.1415G>A	p.Arg472His	p.R472H	ENST00000274335		472	cGc/cAc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6042170	6042170	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	117	555	0	ENST00000265849.7:c.451del	p.Arg151AlafsTer50	p.R151Afs*50	ENST00000265849	NM_000535.5	151	Cgc/gc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10249173	10249173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	145	701	2	ENST00000340748.4:c.4009C>T	p.Arg1337Trp	p.R1337W	ENST00000340748		1337	Cgg/Tgg																																																																															
BCL6	604	MSKCC	GRCh37	3	187447270	187447270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369445234		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	147	625	0	ENST00000232014.4:c.923C>T	p.Ser308Leu	p.S308L	ENST00000232014	NM_001130845.1	308	tCg/tTg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798287	45798287	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs537292657		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	157	645	0	ENST00000372115.3:c.607C>T	p.Arg203Cys	p.R203C	ENST00000372115	NM_001048171.1	203	Cgc/Tgc																																																																															
POLE	5426	MSKCC	GRCh37	12	133249865	133249865	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	70	309	0	ENST00000320574.5:c.1360-2A>G		p.X454_splice	ENST00000320574	NM_006231.2	454																																																																																
TRAF7	84231	MSKCC	GRCh37	16	2225884	2225885	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	143	660	0	ENST00000326181.6:c.1677dup	p.Gly560TrpfsTer28	p.G560Wfs*28	ENST00000326181	NM_032271.2	559	ggt/ggTt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640594	3640594	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	193	867	0	ENST00000294008.3:c.3045del	p.Leu1016TrpfsTer100	p.L1016Wfs*100	ENST00000294008	NM_032444.2	1015	ggG/gg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14028091	14028091	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	57	296	0	ENST00000311895.7:c.1145A>G	p.Glu382Gly	p.E382G	ENST00000311895	NM_005236.2	382	gAg/gGg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89877447	89877447	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	146	479	0	ENST00000389301.3:c.316G>T	p.Gly106Trp	p.G106W	ENST00000389301	NM_000135.2	106	Ggg/Tgg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866707	37866707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775544453		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	110	690	2	ENST00000269571.5:c.874G>A	p.Gly292Ser	p.G292S	ENST00000269571		292	Ggc/Agc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117537	70117537	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	124	425	0	ENST00000245479.2:c.5A>G	p.Asn2Ser	p.N2S	ENST00000245479	NM_000346.3	2	aAt/aGt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15273349	15273349	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779138148		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	163	609	0	ENST00000263388.2:c.5840C>T	p.Ala1947Val	p.A1947V	ENST00000263388	NM_000435.2	1947	gCg/gTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296187	15296187	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	189	717	0	ENST00000263388.2:c.2177G>C	p.Gly726Ala	p.G726A	ENST00000263388	NM_000435.2	726	gGc/gCc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223203	36223203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	45	919	1	ENST00000222270.7:c.5753C>A	p.Pro1918His	p.P1918H	ENST00000222270	NM_014727.1	1918	cCt/cAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42796828	42796828	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1363225423		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	249	845	0	ENST00000575354.2:c.3286T>C	p.Tyr1096His	p.Y1096H	ENST00000575354	NM_015125.3	1096	Tac/Cac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251671	212251671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	85	369	0	ENST00000342788.4:c.3388G>A	p.Ala1130Thr	p.A1130T	ENST00000342788	NM_005235.2	1130	Gct/Act																																																																															
CUL3	8452	MSKCC	GRCh37	2	225378354	225378354	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	46	211	0	ENST00000264414.4:c.541G>T	p.Gly181Cys	p.G181C	ENST00000264414	NM_003590.4	181	Ggc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980742	40980742	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	62	383	0	ENST00000373198.4:c.1744A>G	p.Ile582Val	p.I582V	ENST00000373198	NM_133170.3	582	Att/Gtt																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29095824	29095824	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	128	411	0	ENST00000328354.6:c.1008+2T>C		p.X336_splice	ENST00000328354	NM_007194.3	336																																																																																
NF2	4771	MSKCC	GRCh37	22	30064435	30064435	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	113	312	0	ENST00000338641.4:c.999G>T	p.Gln333His	p.Q333H	ENST00000338641	NM_000268.3	333	caG/caT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47059163	47059163	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1468592664		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	121	433	0	ENST00000409792.3:c.7498A>G	p.Thr2500Ala	p.T2500A	ENST00000409792	NM_014159.6	2500	Acc/Gcc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52649462	52649462	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	111	386	0	ENST00000394830.3:c.1829A>G	p.Asp610Gly	p.D610G	ENST00000394830	NM_018313.4	610	gAt/gGt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027135	71027135	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	126	425	0	ENST00000318789.4:c.1192G>C	p.Ala398Pro	p.A398P	ENST00000318789	NM_032682.5	398	Gct/Cct																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72864535	72864535	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	90	274	0	ENST00000325599.8:c.902T>A	p.Ile301Asn	p.I301N	ENST00000325599	NM_018130.2	301	aTc/aAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156692	55156692	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	72	357	0	ENST00000257290.5:c.3093G>T	p.Glu1031Asp	p.E1031D	ENST00000257290	NM_006206.4	1031	gaG/gaT																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38952436	38952436	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs539956555		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	68	282	0	ENST00000357387.3:c.2989C>T	p.Arg997Cys	p.R997C	ENST00000357387	NM_152756.3	997	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112174074	112174074	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1445394695		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	13	254	0	ENST00000257430.4:c.2783C>T	p.Ala928Val	p.A928V	ENST00000257430	NM_000038.5	928	gCc/gTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188940	32188940	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	149	686	0	ENST00000375023.3:c.614G>T	p.Cys205Phe	p.C205F	ENST00000375023	NM_004557.3	205	tGc/tTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873651	151873651	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs187761353		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	22	493	0	ENST00000262189.6:c.8887C>T	p.Arg2963Cys	p.R2963C	ENST00000262189	NM_170606.2	2963	Cgt/Tgt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5081853	5081853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	11	206	0	ENST00000381652.3:c.2563C>T	p.Leu855Phe	p.L855F	ENST00000381652	NM_004972.3	855	Ctt/Ttt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500813	8500813	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs759552919		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	90	395	0	ENST00000356435.5:c.2069A>G	p.His690Arg	p.H690R	ENST00000356435		690	cAt/cGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970994	21970994	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113798404		P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	155	419	0	ENST00000304494.5:c.364G>A	p.Gly122Ser	p.G122S	ENST00000304494	NM_000077.4	122	Ggc/Agc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139818325	139818325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	45	543	0	ENST00000247668.2:c.1160G>A	p.Gly387Asp	p.G387D	ENST00000247668	NM_021138.3	387	gGc/gAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76776285	76776285	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	120	481	0	ENST00000373344.5:c.7181T>C	p.Val2394Ala	p.V2394A	ENST00000373344	NM_000489.3	2394	gTa/gCa																																																																															
BTK	695	MSKCC	GRCh37	X	100617190	100617190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	108	502	0	ENST00000308731.7:c.559C>T	p.Pro187Ser	p.P187S	ENST00000308731	NM_000061.2	187	Cct/Tct																																																																															
STAG2	10735	MSKCC	GRCh37	X	123200230	123200230	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	72	370	0	ENST00000218089.9:c.2209A>G	p.Thr737Ala	p.T737A	ENST00000218089	NM_001042749.1	737	Act/Gct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0057597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	248	611	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11181361	11181361	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs374052581		P-0057597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	285	653	0	ENST00000361445.4:c.6875A>G	p.Asn2292Ser	p.N2292S	ENST00000361445	NM_004958.3	2292	aAt/aGt																																																																															
AKT1	207	MSKCC	GRCh37	14	105243053	105243053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	67	1047	0	ENST00000349310.3:c.230G>T	p.Cys77Phe	p.C77F	ENST00000349310	NM_001014432.1	77	tGc/tTc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980756	70980756	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	115	407	0	ENST00000276594.2:c.712C>G	p.Leu238Val	p.L238V	ENST00000276594	NM_024504.3	238	Ctt/Gtt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0058418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	21	434	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579575	7579575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	79	822	0	ENST00000269305.4:c.112C>T	p.Gln38Ter	p.Q38*	ENST00000269305	NM_001126112.2	38	Caa/Taa																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45860940	45860940	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs574002154		P-0058418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	58	839	0	ENST00000391945.4:c.1255G>A	p.Glu419Lys	p.E419K	ENST00000391945	NM_000400.3	419	Gag/Aag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492913	56492913	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	64	367	0	ENST00000407977.2:c.26del	p.Leu9ArgfsTer9	p.L9Rfs*9	ENST00000407977		9	cTg/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0062530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1378	60	736	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5215361	5215361	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1237	68	761	0	ENST00000357368.4:c.4257G>C	p.Lys1419Asn	p.K1419N	ENST00000357368	NM_002850.3	1419	aaG/aaC																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038884	47038884	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			736	39	462	0	ENST00000329236.7:c.660C>A	p.Asn220Lys	p.N220K	ENST00000329236	NM_001204466.1	220	aaC/aaA																																																																															
GNB1	2782	MSKCC	GRCh37	1	1737940	1737940	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012491-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			595	81	422	0	ENST00000378609.4:c.241A>G	p.Ile81Val	p.I81V	ENST00000378609	NM_002074.3	81	Atc/Gtc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2132455	2132455	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012491-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			482	78	488	0	ENST00000219476.3:c.3833T>G	p.Leu1278Arg	p.L1278R	ENST00000219476	NM_000548.3	1278	cTg/cGg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164528	36164528	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012491-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			526	71	527	0	ENST00000300305.3:c.1347G>C	p.Gln449His	p.Q449H	ENST00000300305		449	caG/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046285-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			800	338	848	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag																																																																															
RB1	5925	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587776783		P-0046285-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			34	135	237	0	ENST00000267163.4:c.1215+1G>A		p.X405_splice	ENST00000267163	NM_000321.2	405																																																																																
PGBD5	79605	MSKCC	GRCh37	1	230492731	230492731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046285-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	274	711	0	ENST00000525115.1:c.461G>T	p.Ser154Ile	p.S154I	ENST00000525115		154	aGc/aTc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18499632	18499632	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046285-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			390	172	542	0	ENST00000266497.5:c.1487T>C	p.Val496Ala	p.V496A	ENST00000266497		496	gTc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578277	7578284	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGGGGC	GGAGGGGC	-			P-0046285-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			436	632	897	0	ENST00000269305.4:c.565_572del	p.Ala189SerfsTer17	p.A189Sfs*17	ENST00000269305	NM_001126112.2	189	GCCCCTCCt/t																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11136170	11136170	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046285-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			83	409	588	0	ENST00000344626.4:c.3155del	p.Phe1052SerfsTer54	p.F1052Sfs*54	ENST00000344626	NM_003072.3	1052	Ttc/tc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146538	185146538	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046285-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			599	483	671	0	ENST00000265026.3:c.169A>C	p.Ile57Leu	p.I57L	ENST00000265026	NM_004721.4	57	Atc/Ctc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0061432-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			190	16	190	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0061432-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			551	127	721	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467665	66467665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061432-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			416	52	478	0	ENST00000273854.3:c.604G>A	p.Val202Ile	p.V202I	ENST00000273854	NM_004439.5	202	Gta/Ata																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098952	178098975	+	inframe_deletion	In_Frame_Del	DEL	TCCAAGATCTATATCTTGCCTCCA	TCCAAGATCTATATCTTGCCTCCA	-			P-0061432-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			364	71	436	0	ENST00000397062.3:c.70_93del	p.Trp24_Gly31del	p.W24_G31del	ENST00000397062	NM_006164.4	24	TGGAGGCAAGATATAGATCTTGGA/-																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426843	49426843	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0061432-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			578	97	730	0	ENST00000301067.7:c.11645C>G	p.Ser3882Ter	p.S3882*	ENST00000301067	NM_003482.3	3882	tCa/tGa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28903849	28903849	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061432-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			415	71	490	0	ENST00000282397.4:c.2610del	p.Ser870ArgfsTer6	p.S870Rfs*6	ENST00000282397	NM_002019.4	870	agC/ag																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631617	67631617	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061432-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			446	31	446	0	ENST00000272342.5:c.1803A>T	p.Glu601Asp	p.E601D	ENST00000272342	NM_019002.3	601	gaA/gaT																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881702	111881702	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061432-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			506	46	485	0	ENST00000393256.3:c.380A>G	p.Tyr127Cys	p.Y127C	ENST00000393256	NM_006538.4	127	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519985		P-0061731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	435	669	1	ENST00000269305.4:c.857A>G	p.Glu286Gly	p.E286G	ENST00000269305	NM_001126112.2	286	gAa/gGa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458147	120458147	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1325403451		P-0061731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	421	733	0	ENST00000256646.2:c.7198C>T	p.Arg2400Ter	p.R2400*	ENST00000256646	NM_024408.3	2400	Cga/Tga																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852488	63852488	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	222	574	0	ENST00000279873.7:c.3266C>G	p.Ser1089Trp	p.S1089W	ENST00000279873	NM_032199.2	1089	tCg/tGg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119767	70119767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	151	443	0	ENST00000245479.2:c.769C>A	p.Arg257Ser	p.R257S	ENST00000245479	NM_000346.3	257	Cgc/Agc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033398	48033398	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	45	427	0	ENST00000234420.5:c.3702A>T	p.Glu1234Asp	p.E1234D	ENST00000234420	NM_000179.2	1234	gaA/gaT																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1941381	1941381	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0061731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	67	347	0	ENST00000382895.3:c.1757C>T	p.Ala586Val	p.A586V	ENST00000382895	NM_133330.2	586	gCa/gTa																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150913824	150913831	+	frameshift_variant	Frame_Shift_Del	DEL	CCTTAAGA	CCTTAAGA	TGAAGCT			P-0061731-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	136	345	1	ENST00000271640.5:c.467_474delinsTGAAGCT	p.Ala156ValfsTer30	p.A156Vfs*30	ENST00000271640	NM_001145415.1	156	gCCTTAAGA/gTGAAGCT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0062512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	165	663	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0062512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	154	554	0	ENST00000349310.3:c.49G>C	p.Glu17Gln	p.E17Q	ENST00000349310	NM_001014432.1	17	Gag/Cag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224351	36224351	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs758151170		P-0062512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	46	827	0	ENST00000222270.7:c.6901G>C	p.Asp2301His	p.D2301H	ENST00000222270	NM_014727.1	2301	Gat/Cat																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170011182	170011182	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	100	373	0	ENST00000295797.4:c.1303G>T	p.Asp435Tyr	p.D435Y	ENST00000295797	NM_002740.5	435	Gac/Tac																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190573	32190573	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	154	687	0	ENST00000375023.3:c.166G>C	p.Gly56Arg	p.G56R	ENST00000375023	NM_004557.3	56	Ggc/Cgc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			767	212	886	2	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	161	469	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	73	675	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	279	884	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	17	597	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027093	71027093	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200629338		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			825	319	707	0	ENST00000318789.4:c.1234G>A	p.Ala412Thr	p.A412T	ENST00000318789	NM_032682.5	412	Gcc/Acc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	189	582	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	196	652	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	155	711	1	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	67	277	2	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	143	598	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
EED	8726	MSKCC	GRCh37	11	85979574	85979574	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1301151502		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	83	284	0	ENST00000263360.6:c.937C>T	p.Arg313Ter	p.R313*	ENST00000263360	NM_003797.3	313	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	145	661	1	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578245	7578245	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780072		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	183	694	0	ENST00000269305.4:c.604C>T	p.Arg202Cys	p.R202C	ENST00000269305	NM_001126112.2	202	Cgt/Tgt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272337	15272337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs776990686		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	92	786	2	ENST00000263388.2:c.6102del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2034	ccC/cc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	297	496	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	195	711	1	ENST00000575354.2:c.3743del	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729175	66729175	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121908596		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	218	568	0	ENST00000307102.5:c.383G>A	p.Gly128Asp	p.G128D	ENST00000307102	NM_002755.3	128	gGc/gAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98268793	98268793	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	164	582	1	ENST00000331920.6:c.290del	p.Asn97ThrfsTer20	p.N97Tfs*20	ENST00000331920	NM_000264.3	97	aAc/ac																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	135	561	2	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845549	72845551	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs763986819		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			771	83	706	0	ENST00000268489.5:c.3789_3791del	p.Asn1263del	p.N1263del	ENST00000268489	NM_006885.3	1263	aaCAAg/aag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907421	32907421	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs80359307		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	124	334	1	ENST00000380152.3:c.1813del	p.Ile605TyrfsTer9	p.I605Yfs*9	ENST00000380152		602	ggA/gg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	192	788	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779578	3779578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	199	770	0	ENST00000262367.5:c.5470G>A	p.Ala1824Thr	p.A1824T	ENST00000262367	NM_004380.2	1824	Gcc/Acc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225955	2225955	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs756230613		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	155	705	0	ENST00000326181.6:c.1746+1G>A		p.X582_splice	ENST00000326181	NM_032271.2	582																																																																																
FAT1	2195	MSKCC	GRCh37	4	187630605	187630605	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	151	511	1	ENST00000441802.2:c.377del	p.Asn126IlefsTer20	p.N126Ifs*20	ENST00000441802	NM_005245.3	126	aAt/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	138	604	0	ENST00000269305.4:c.376T>C	p.Tyr126His	p.Y126H	ENST00000269305	NM_001126112.2	126	Tac/Cac																																																																															
APC	324	MSKCC	GRCh37	5	112177265	112177265	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	147	522	0	ENST00000257430.4:c.5978del	p.Pro1993LeufsTer51	p.P1993Lfs*51	ENST00000257430	NM_000038.5	1992	Ccc/cc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905324	50905324	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	179	860	2	ENST00000440232.2:c.537del	p.Arg180GlyfsTer3	p.R180Gfs*3	ENST00000440232	NM_002691.3	178	Ggg/gg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599234	28599234	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			765	85	774	0	ENST00000253063.3:c.685del	p.Gln229ArgfsTer18	p.Q229Rfs*18	ENST00000253063	NM_031459.4	227	gCc/gc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793332	139793332	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376801177		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	183	540	0	ENST00000247668.2:c.140C>T	p.Ala47Val	p.A47V	ENST00000247668	NM_021138.3	47	gCg/gTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400029	139400029	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs778742968		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	129	826	0	ENST00000277541.6:c.4319T>C	p.Ile1440Thr	p.I1440T	ENST00000277541	NM_017617.3	1440	aTc/aCc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350753	89350753	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs886041791		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	73	438	0	ENST00000301030.4:c.2197C>T	p.Arg733Ter	p.R733*	ENST00000301030	NM_001256183.1	733	Cga/Tga																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992720	68992721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs774202059		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	104	366	2	ENST00000288368.4:c.1693dup	p.Ser565PhefsTer3	p.S565Ffs*3	ENST00000288368	NM_024870.2	562	cgt/cgTt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157488275	157488275	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377351099		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	181	570	0	ENST00000346085.5:c.2981C>T	p.Ala994Val	p.A994V	ENST00000346085	NM_020732.3	994	gCg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224171	36224171	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779883307		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	129	456	0	ENST00000222270.7:c.6721G>A	p.Gly2241Ser	p.G2241S	ENST00000222270	NM_014727.1	2241	Ggc/Agc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211660	36211660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	149	702	0	ENST00000222270.7:c.1411C>T	p.Arg471Trp	p.R471W	ENST00000222270	NM_014727.1	471	Cgg/Tgg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970916	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	112	332	0	ENST00000265081.6:c.1147_1148del	p.Lys383GlyfsTer20	p.K383Gfs*20	ENST00000265081	NM_002439.4	381	AAa/a																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214395	5214395	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772384138		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	180	621	0	ENST00000357368.4:c.4591G>A	p.Val1531Ile	p.V1531I	ENST00000357368	NM_002850.3	1531	Gtc/Atc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40874920	40874920	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756635466		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	114	452	0	ENST00000428826.2:c.380C>T	p.Thr127Met	p.T127M	ENST00000428826		127	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827763	72827763	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	57	569	0	ENST00000268489.5:c.8818A>G	p.Ser2940Gly	p.S2940G	ENST00000268489	NM_006885.3	2940	Agc/Ggc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755669	57755670	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1279983695		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	222	706	1	ENST00000274289.3:c.117dup	p.Glu40ArgfsTer66	p.E40Rfs*66	ENST00000274289	NM_006622.3	39	-/C																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027152	71027153	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	232	612	0	ENST00000318789.4:c.1174_1175del	p.Ser392GlnfsTer68	p.S392Qfs*68	ENST00000318789	NM_032682.5	392	TCc/c																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533860	63533860	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751843834		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	170	750	0	ENST00000307078.5:c.1294G>A	p.Glu432Lys	p.E432K	ENST00000307078	NM_004655.3	432	Gag/Aag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396205	139396205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	107	692	0	ENST00000277541.6:c.5633G>T	p.Gly1878Val	p.G1878V	ENST00000277541	NM_017617.3	1878	gGg/gTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412530	63412530	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	178	658	0	ENST00000330258.3:c.637C>T	p.Gln213Ter	p.Q213*	ENST00000330258	NM_152424.3	213	Cag/Tag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046716	180046716	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs910059826		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	185	861	0	ENST00000261937.6:c.2596G>A	p.Gly866Ser	p.G866S	ENST00000261937	NM_182925.4	866	Ggc/Agc																																																																															
TET2	54790	MSKCC	GRCh37	4	106155661	106155661	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	177	533	0	ENST00000380013.4:c.565del	p.Ser189ValfsTer18	p.S189Vfs*18	ENST00000380013	NM_001127208.2	188	Aaa/aa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223189	5223189	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151114416		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	162	712	1	ENST00000357368.4:c.2614C>T	p.Arg872Cys	p.R872C	ENST00000357368	NM_002850.3	872	Cgt/Tgt																																																																															
WT1	7490	MSKCC	GRCh37	11	32456560	32456560	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	25	482	0	ENST00000332351.3:c.332del	p.Pro111ArgfsTer47	p.P111Rfs*47	ENST00000332351	NM_024426.4	111	cCg/cg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2115921	2115921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	216	548	0	ENST00000349721.2:c.3556G>A	p.Ala1186Thr	p.A1186T	ENST00000349721	NM_003070.3	1186	Gcg/Acg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784392	9784392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	47	586	0	ENST00000377346.4:c.2777A>G	p.Asn926Ser	p.N926S	ENST00000377346	NM_005026.3	926	aAc/aGc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16247426	16247426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	112	431	0	ENST00000375759.3:c.1697A>G	p.Gln566Arg	p.Q566R	ENST00000375759	NM_015001.2	566	cAa/cGa																																																																															
RET	5979	MSKCC	GRCh37	10	43612150	43612150	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	137	748	0	ENST00000355710.3:c.2255A>G	p.Tyr752Cys	p.Y752C	ENST00000355710	NM_020975.4	752	tAc/tGc																																																																															
TET1	80312	MSKCC	GRCh37	10	70405346	70405346	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	196	563	0	ENST00000373644.4:c.2860A>G	p.Asn954Asp	p.N954D	ENST00000373644	NM_030625.2	954	Aat/Gat																																																																															
GAB2	9846	MSKCC	GRCh37	11	77936188	77936188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	203	579	0	ENST00000361507.4:c.1268C>T	p.Ala423Val	p.A423V	ENST00000361507	NM_080491.2	423	gCt/gTt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18544080	18544080	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	70	346	0	ENST00000266497.5:c.1897G>T	p.Glu633Ter	p.E633*	ENST00000266497		633	Gag/Tag																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562306	21562306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	140	677	0	ENST00000382592.4:c.1613C>T	p.Ala538Val	p.A538V	ENST00000382592	NM_014572.2	538	gCa/gTa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563377	21563377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	203	813	0	ENST00000382592.4:c.542C>T	p.Ala181Val	p.A181V	ENST00000382592	NM_014572.2	181	gCg/gTg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2213961	2213961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	181	674	0	ENST00000326181.6:c.40G>A	p.Gly14Arg	p.G14R	ENST00000326181	NM_032271.2	14	Ggg/Agg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41234586	41234586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	27	388	0	ENST00000357654.3:c.4192G>A	p.Asp1398Asn	p.D1398N	ENST00000357654	NM_007294.3	1398	Gat/Aat																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2208962	2208963	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	111	313	0	ENST00000398665.3:c.995dup	p.Leu334ThrfsTer25	p.L334Tfs*25	ENST00000398665	NM_032482.2	331	aac/aaCc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272350	15272350	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1394014476		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	225	782	0	ENST00000263388.2:c.6089C>T	p.Pro2030Leu	p.P2030L	ENST00000263388	NM_000435.2	2030	cCc/cTc																																																																															
AKT2	208	MSKCC	GRCh37	19	40739800	40739800	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	148	658	0	ENST00000392038.2:c.1425C>G	p.Tyr475Ter	p.Y475*	ENST00000392038	NM_001626.4	475	taC/taG																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45872202	45872202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	204	638	2	ENST00000391945.4:c.232C>T	p.Pro78Ser	p.P78S	ENST00000391945	NM_000400.3	78	Cca/Tca																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424495	47424495	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	42	590	0	ENST00000404338.3:c.2563T>A	p.Tyr855Asn	p.Y855N	ENST00000404338	NM_004491.4	855	Tac/Aac																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47440545	47440545	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	47	488	0	ENST00000404338.3:c.3706T>G	p.Ser1236Ala	p.S1236A	ENST00000404338	NM_004491.4	1236	Tcc/Gcc																																																																															
RAC2	5880	MSKCC	GRCh37	22	37637667	37637667	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	148	714	0	ENST00000249071.6:c.67T>C	p.Tyr23His	p.Y23H	ENST00000249071	NM_002872.4	23	Tac/Cac																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30648377	30648377	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	163	544	0	ENST00000359013.4:c.2T>C	p.Met1?	p.M1?	ENST00000359013	NM_001024847.2	1	aTg/aCg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437755	52437755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	169	659	0	ENST00000460680.1:c.1406G>A	p.Ser469Asn	p.S469N	ENST00000460680	NM_004656.3	469	aGc/aAc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63976019	63976019	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	271	687	1	ENST00000295900.6:c.1529A>G	p.His510Arg	p.H510R	ENST00000295900	NM_000333.3	510	cAt/cGt																																																																															
MITF	4286	MSKCC	GRCh37	3	69987025	69987025	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750608171		P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	217	555	1	ENST00000352241.4:c.407G>A	p.Arg136Gln	p.R136Q	ENST00000352241	NM_198159.2	136	cGg/cAg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66242780	66242780	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	36	499	0	ENST00000273854.3:c.1792del	p.Cys598AlafsTer20	p.C598Afs*20	ENST00000273854	NM_004439.5	598	Tgc/gc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541877	187541877	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	152	572	0	ENST00000441802.2:c.5863T>C	p.Ser1955Pro	p.S1955P	ENST00000441802	NM_005245.3	1955	Tcc/Ccc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630294	187630294	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			801	78	650	0	ENST00000441802.2:c.688A>C	p.Lys230Gln	p.K230Q	ENST00000441802	NM_005245.3	230	Aag/Cag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630452	187630452	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			718	105	631	1	ENST00000441802.2:c.530A>G	p.Asp177Gly	p.D177G	ENST00000441802	NM_005245.3	177	gAc/gGc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950201	38950201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	105	569	0	ENST00000357387.3:c.3749C>T	p.Thr1250Ile	p.T1250I	ENST00000357387	NM_152756.3	1250	aCa/aTa																																																																															
APC	324	MSKCC	GRCh37	5	112177752	112177752	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	37	403	0	ENST00000257430.4:c.6461A>G	p.Gln2154Arg	p.Q2154R	ENST00000257430	NM_000038.5	2154	cAa/cGa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117647529	117647529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	97	438	0	ENST00000368508.3:c.5415G>A	p.Met1805Ile	p.M1805I	ENST00000368508	NM_002944.2	1805	atG/atA																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962857	2962858	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	150	530	0	ENST00000396946.4:c.2050_2051insT	p.Gly684ValfsTer25	p.G684Vfs*25	ENST00000396946	NM_032415.4	684	ggg/gTgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873584	151873584	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			729	43	652	0	ENST00000262189.6:c.8954A>G	p.Gln2985Arg	p.Q2985R	ENST00000262189	NM_170606.2	2985	cAg/cGg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68995595	68995596	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	103	351	0	ENST00000288368.4:c.2001_2002del	p.Arg667SerfsTer18	p.R667Sfs*18	ENST00000288368	NM_024870.2	667	AGa/a																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841214	15841214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			787	328	881	1	ENST00000307771.7:c.1298G>A	p.Arg433His	p.R433H	ENST00000307771	NM_005089.3	433	cGc/cAc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226046	53226046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062515-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	224	678	0	ENST00000375401.3:c.2803A>G	p.Lys935Glu	p.K935E	ENST00000375401	NM_004187.3	935	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876659802		P-0062518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	148	735	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061131	38061210	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGGCGGCGCA	GCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGGCGGCGCA	-			P-0062518-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			846	316	680	0	ENST00000250448.2:c.779_858del	p.Leu260CysfsTer6	p.L260Cfs*6	ENST00000250448	NM_004496.3	260	tTGCGCCGCCAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGC/t																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061182	38061194	+	frameshift_variant	Frame_Shift_Del	DEL	CTCGCACTTGAAG	CTCGCACTTGAAG	-			P-0062519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	8	824	0	ENST00000250448.2:c.795_807del	p.Phe266SerfsTer51	p.F266Sfs*51	ENST00000250448	NM_004496.3	265	cgCTTCAAGTGCGAG/cg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061217	38061243	+	inframe_deletion	In_Frame_Del	DEL	AGCCGTTCTCGAACATGTTGCCGGAGT	AGCCGTTCTCGAACATGTTGCCGGAGT	-			P-0062519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	14	796	0	ENST00000250448.2:c.746_772del	p.Asp249_Cys258delinsGly	p.D249_C258delinsG	ENST00000250448	NM_004496.3	249	gACTCCGGCAACATGTTCGAGAACGGCTgc/ggc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0062526-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	13	567	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
IL10	3586	MSKCC	GRCh37	1	206942042	206942042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	145	561	0	ENST00000423557.1:c.476G>A	p.Ser159Asn	p.S159N	ENST00000423557	NM_000572.2	159	aGt/aAt																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72890344	72890344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	57	457	0	ENST00000325599.8:c.338C>T	p.Ser113Phe	p.S113F	ENST00000325599	NM_018130.2	113	tCt/tTt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86674260	86674260	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	102	517	0	ENST00000274376.6:c.2392A>T	p.Met798Leu	p.M798L	ENST00000274376	NM_002890.2	798	Atg/Ttg																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271393	26271393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062532-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			890	209	1003	0	ENST00000305910.3:c.220G>A	p.Glu74Lys	p.E74K	ENST00000305910	NM_003534.2	74	Gaa/Aaa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8633319	8633319	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs778130827		P-0062534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	33	560	0	ENST00000356435.5:c.350G>A	p.Arg117Gln	p.R117Q	ENST00000356435		117	cGg/cAg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061218	38061232	+	inframe_deletion	In_Frame_Del	DEL	GCCGTTCTCGAACAT	GCCGTTCTCGAACAT	-			P-0062534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	26	817	0	ENST00000250448.2:c.757_771del	p.Met253_Gly257del	p.M253_G257del	ENST00000250448	NM_004496.3	253	ATGTTCGAGAACGGC/-																																																																															
POT1	25913	MSKCC	GRCh37	7	124511047	124511047	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062534-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	21	374	1	ENST00000357628.3:c.173C>A	p.Thr58Asn	p.T58N	ENST00000357628	NM_015450.2	58	aCt/aAt																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45795057	45795057	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			817	77	750	0	ENST00000372115.3:c.1529T>C	p.Met510Thr	p.M510T	ENST00000372115	NM_001048171.1	510	aTg/aCg																																																																															
HRAS	3265	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28933406		P-0062535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	427	874	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47601073	47601073	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0062535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	226	639	0	ENST00000263735.4:c.311T>G	p.Leu104Arg	p.L104R	ENST00000263735	NM_002354.2	104	cTc/cGc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643698	52643698	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0062535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	62	490	0	ENST00000394830.3:c.2198A>C	p.Asn733Thr	p.N733T	ENST00000394830	NM_018313.4	733	aAt/aCt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859750	151859750	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0062535-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			815	147	785	0	ENST00000262189.6:c.10912del	p.Ser3638GlnfsTer9	p.S3638Qfs*9	ENST00000262189	NM_170606.2	3638	Tca/ca																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584560	48584560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	714	744	0	ENST00000342988.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000342988	NM_005359.5	245	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175897	112175897	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0062539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	220	673	0	ENST00000257430.4:c.4606G>T	p.Glu1536Ter	p.E1536*	ENST00000257430	NM_000038.5	1536	Gaa/Taa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519733		P-0062539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			883	441	800	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361244	66361244	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	193	628	0	ENST00000273854.3:c.928T>C	p.Phe310Leu	p.F310L	ENST00000273854	NM_004439.5	310	Ttc/Ctc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46240701	46240701	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	51	489	0	ENST00000334344.6:c.1561G>C	p.Glu521Gln	p.E521Q	ENST00000334344	NM_152641.2	521	Gag/Cag																																																																															
FLT3	2322	MSKCC	GRCh37	13	28636188	28636188	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1932	300	615	0	ENST00000241453.7:c.184G>C	p.Asp62His	p.D62H	ENST00000241453	NM_004119.2	62	Gac/Cac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900412	32900412	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	59	429	0	ENST00000380152.3:c.509T>C	p.Phe170Ser	p.F170S	ENST00000380152		170	tTt/tCt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18277009	18277009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	601	695	0	ENST00000222254.8:c.1456G>A	p.Glu486Lys	p.E486K	ENST00000222254	NM_005027.3	486	Gag/Aag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620694	52620694	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0062539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	106	470	2	ENST00000394830.3:c.3059A>C	p.Lys1020Thr	p.K1020T	ENST00000394830	NM_018313.4	1020	aAg/aCg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31449409	31449409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			774	297	548	0	ENST00000344624.3:c.2800C>T	p.His934Tyr	p.H934Y	ENST00000344624		934	Cac/Tac																																																																															
IL7R	3575	MSKCC	GRCh37	5	35861049	35861049	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			935	418	531	0	ENST00000303115.3:c.178G>C	p.Glu60Gln	p.E60Q	ENST00000303115	NM_002185.3	60	Gag/Cag																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591130	67591131	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGACGAGAG			P-0062539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	244	519	0	ENST00000274335.5:c.1725_1733dup	p.Arg577_Asp578insGluThrArg	p.R577_D578insETR	ENST00000274335		575	aag/aAGACGAGAGag																																																																															
LYN	4067	MSKCC	GRCh37	8	56864596	56864596	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	92	484	0	ENST00000519728.1:c.559A>C	p.Ser187Arg	p.S187R	ENST00000519728	NM_002350.3	187	Agt/Cgt																																																																															
BTK	695	MSKCC	GRCh37	X	100608848	100608875	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCCACTTACCAAAAGCCCAAATGTCAG	ATCCACTTACCAAAAGCCCAAATGTCAG	-			P-0062539-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	209	483	0	ENST00000308731.7:c.1733_1750+10del		p.X578_splice	ENST00000308731	NM_000061.2	578																																																																																
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0062683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	164	371	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410720	63410720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	352	496	0	ENST00000330258.3:c.2447G>A	p.Arg816Gln	p.R816Q	ENST00000330258	NM_152424.3	816	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0062683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	262	298	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578407	7578408	+	missense_variant	Missense_Mutation	DNP	GC	GC	CA			P-0062683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			52	181	660	1	ENST00000269305.4:c.522_523delinsTG	p.Arg174_Arg175delinsSerGly	p.R174_R175delinsSG	ENST00000269305	NM_001126112.2	174	agGCgc/agTGgc																																																																															
AXL	558	MSKCC	GRCh37	19	41737094	41737094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	236	562	0	ENST00000301178.4:c.674C>T	p.Pro225Leu	p.P225L	ENST00000301178	NM_021913.4	225	cCc/cTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242484	55242507	+	inframe_deletion	In_Frame_Del	DEL	TCTCCGAAAGCCAACAAGGAAATC	TCTCCGAAAGCCAACAAGGAAATC	-	rs121913463		P-0062684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	36	401	0	ENST00000275493.2:c.2254_2277del	p.Ser752_Ile759del	p.S752_I759del	ENST00000275493	NM_005228.3	752	TCTCCGAAAGCCAACAAGGAAATC/-																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520166	9520166	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0062684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	45	472	0	ENST00000353224.5:c.2103A>T	p.Lys701Asn	p.K701N	ENST00000353224	NM_177990.2	701	aaA/aaT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044970	47044970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	72	597	0	ENST00000329236.7:c.2062C>T	p.Arg688Cys	p.R688C	ENST00000329236	NM_001204466.1	688	Cgc/Tgc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679232	88679232	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	63	439	0	ENST00000360948.2:c.805A>G	p.Thr269Ala	p.T269A	ENST00000360948	NM_001012338.2	269	Acg/Gcg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0061840-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			723	199	776	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579508	7579508	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061840-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			549	452	1095	0	ENST00000269305.4:c.179del	p.Pro60GlnfsTer63	p.P60Qfs*63	ENST00000269305	NM_001126112.2	60	cCa/ca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259442	55259442	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs397517127		P-0061840-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			661	177	659	0	ENST00000275493.2:c.2500G>T	p.Val834Leu	p.V834L	ENST00000275493	NM_005228.3	834	Gtg/Ttg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022839	12022840	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0061840-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			760	479	1245	1	ENST00000396373.4:c.945_946delinsAT	p.Met315_Asn316delinsIleTyr	p.M315_N316delinsIY	ENST00000396373	NM_001987.4	315	atGAac/atATac																																																																															
KIT	3815	MSKCC	GRCh37	4	55594025	55594025	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061840-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			583	157	627	0	ENST00000288135.5:c.1811T>C	p.Val604Ala	p.V604A	ENST00000288135	NM_000222.2	604	gTt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs886039484		P-0062408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	78	732	0	ENST00000269305.4:c.643A>G	p.Ser215Gly	p.S215G	ENST00000269305	NM_001126112.2	215	Agt/Ggt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830471	72830471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	128	514	0	ENST00000268489.5:c.6110del	p.Pro2037GlnfsTer64	p.P2037Qfs*64	ENST00000268489	NM_006885.3	2037	cCa/ca																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477095	67477095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			640	102	602	0	ENST00000327367.4:c.902G>A	p.Gly301Glu	p.G301E	ENST00000327367	NM_005902.3	301	gGg/gAg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14014036	14014036	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062464-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	50	399	0	ENST00000311895.7:c.14A>C	p.Gln5Pro	p.Q5P	ENST00000311895	NM_005236.2	5	cAg/cCg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17117010	17117010	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062464-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	109	598	0	ENST00000285071.4:c.1699T>G	p.Ser567Ala	p.S567A	ENST00000285071	NM_144997.5	567	Tcc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0062465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	162	573	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0062465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	102	544	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971052	21971052	+	synonymous_variant	Silent	SNP	C	C	T			P-0062465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	36	597	1	ENST00000304494.5:c.306G>A	p.Ala102=	p.A102=	ENST00000304494	NM_000077.4	102	gcG/gcA																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575376	64575376	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	204	727	0	ENST00000337652.1:c.656G>T	p.Gly219Val	p.G219V	ENST00000337652	NM_130803.2	219	gGt/gTt																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7983128	7983128	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs143465858		P-0062465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	82	511	0	ENST00000319144.4:c.886C>A	p.Pro296Thr	p.P296T	ENST00000319144	NM_001139.2	296	Ccg/Acg																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30253762	30253762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1102	121	555	0	ENST00000307677.4:c.692G>A	p.Ser231Asn	p.S231N	ENST00000307677	NM_138578.1	231	aGt/aAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151833968	151833968	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062465-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			701	135	515	0	ENST00000262189.6:c.14685C>G	p.His4895Gln	p.H4895Q	ENST00000262189	NM_170606.2	4895	caC/caG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0062469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	152	700	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0062469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	51	364	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656798	45656798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	66	579	0	ENST00000407780.3:c.358C>A	p.Leu120Met	p.L120M	ENST00000407780	NM_001283052.1	120	Ctg/Atg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521849	157521849	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771056710		P-0062469-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	63	619	0	ENST00000346085.5:c.4121G>A	p.Arg1374His	p.R1374H	ENST00000346085	NM_020732.3	1374	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578224	7578224	+	stop_gained	Nonsense_Mutation	SNP	T	T	A	rs1429743956		P-0062475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			765	79	616	0	ENST00000269305.4:c.625A>T	p.Arg209Ter	p.R209*	ENST00000269305	NM_001126112.2	209	Aga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0062475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	112	300	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986909	36986910	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGCA			P-0062475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	81	645	0	ENST00000354822.5:c.776_779dup	p.Gln260HisfsTer180	p.Q260Hfs*180	ENST00000354822	NM_001079668.2	260	cag/caTGCAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0062480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	236	544	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281250	15281250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1184522923		P-0062480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	125	676	0	ENST00000263388.2:c.5006G>A	p.Arg1669His	p.R1669H	ENST00000263388	NM_000435.2	1669	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112154977	112154977	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0062480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	115	449	0	ENST00000257430.4:c.1248C>A	p.Tyr416Ter	p.Y416*	ENST00000257430	NM_000038.5	416	taC/taA																																																																															
APC	324	MSKCC	GRCh37	5	112175347	112175359	+	frameshift_variant	Frame_Shift_Del	DEL	TGAATTTTCTTCA	TGAATTTTCTTCA	CG			P-0062480-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	101	494	1	ENST00000257430.4:c.4056_4068delinsCG	p.Glu1353GlyfsTer18	p.E1353Gfs*18	ENST00000257430	NM_000038.5	1352	gtTGAATTTTCTTCA/gtCG																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0062483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	155	594	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433982	49433982	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760263014		P-0062483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			779	172	786	0	ENST00000301067.7:c.7571C>T	p.Thr2524Met	p.T2524M	ENST00000301067	NM_003482.3	2524	aCg/aTg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967993	93967993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	195	466	0	ENST00000369303.4:c.1934G>A	p.Gly645Asp	p.G645D	ENST00000369303	NM_004440.3	645	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	G	rs1131691003		P-0062483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	235	505	2	ENST00000269305.4:c.96+1G>C		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0062483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	183	360	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761146	59761147	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs771654971		P-0062483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	98	617	0	ENST00000259008.2:c.3260dup	p.Asn1087LysfsTer4	p.N1087Kfs*4	ENST00000259008	NM_032043.2	1087	aat/aaAt																																																																															
KIT	3815	MSKCC	GRCh37	4	55564520	55564520	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0062483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	136	616	0	ENST00000288135.5:c.408T>A	p.Cys136Ter	p.C136*	ENST00000288135	NM_000222.2	136	tgT/tgA																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540267	23540283	+	frameshift_variant	Frame_Shift_Del	DEL	TGCGGCCGCCTTGCCGC	TGCGGCCGCCTTGCCGC	-			P-0062483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	178	774	0	ENST00000380871.4:c.120_136del	p.Gln40HisfsTer62	p.Q40Hfs*62	ENST00000380871	NM_006167.3	40	caGCGGCAAGGCGGCCGCAcg/cacg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0062484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	396	632	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106861	27106861	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	190	667	0	ENST00000324856.7:c.6472C>T	p.Arg2158Ter	p.R2158*	ENST00000324856	NM_006015.4	2158	Cga/Tga																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025621	1025621	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763842232		P-0062484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	186	592	0	ENST00000358495.3:c.754G>A	p.Glu252Lys	p.E252K	ENST00000358495	NM_134424.2	252	Gag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108180964	108180964	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	72	349	0	ENST00000278616.4:c.5840C>G	p.Ser1947Cys	p.S1947C	ENST00000278616	NM_000051.3	1947	tCt/tGt																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839755	27839764	+	frameshift_variant	Frame_Shift_Del	DEL	AATGGCGCAC	AATGGCGCAC	-			P-0062484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			810	204	760	0	ENST00000328488.2:c.330_339del	p.Cys111ThrfsTer?	p.C111Tfs*?	ENST00000328488	NM_003533.2	110	ctGTGCGCCATT/ct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653796	89653804	+	inframe_deletion	In_Frame_Del	DEL	ATTATTGCT	ATTATTGCT	-			P-0062488-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	33	230	0	ENST00000371953.3:c.96_104del	p.Ile32_Ala34del	p.I32_A34del	ENST00000371953	NM_000314.4	32	ATTATTGCT/-																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14031681	14031681	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766395322		P-0062488-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	48	312	0	ENST00000311895.7:c.1870C>T	p.Arg624Trp	p.R624W	ENST00000311895	NM_005236.2	624	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579383	7579384	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0062488-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	99	552	0	ENST00000269305.4:c.303_304del	p.Lys101AsnfsTer47	p.K101Nfs*47	ENST00000269305	NM_001126112.2	101	aaAAcc/aacc																																																																															
NF1	4763	MSKCC	GRCh37	17	29676206	29676219	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	GTTAACAAACACAG	GTTAACAAACACAG	TGAC			P-0062488-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	39	332	1	ENST00000358273.4:c.7258_7271delinsTGAC	p.Val2420Ter	p.V2420*	ENST00000358273	NM_001042492.2	2420	GTTAACAAACACAGa/TGACa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588982	67588982	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062488-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	56	380	0	ENST00000274335.5:c.1073G>C	p.Arg358Pro	p.R358P	ENST00000274335		358	cGa/cCa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056440	26056440	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773914281		P-0062488-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	90	441	0	ENST00000343677.2:c.217G>A	p.Val73Met	p.V73M	ENST00000343677	NM_005319.3	73	Gtg/Atg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552865	106552865	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062488-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	114	542	0	ENST00000369096.4:c.830A>G	p.Glu277Gly	p.E277G	ENST00000369096	NM_001198.3	277	gAa/gGa																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22008820	22008896	+	frameshift_variant	Frame_Shift_Del	DEL	GGTTGACTCCGTTGGGATCCGCGCCGGCTTCCAGGAGCTGTCGCACCTTCTCCACTAGTCCCCGCGCCGCGGCGCTG	GGTTGACTCCGTTGGGATCCGCGCCGGCTTCCAGGAGCTGTCGCACCTTCTCCACTAGTCCCCGCGCCGCGGCGCTG	-			P-0062488-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	108	499	0	ENST00000276925.6:c.57_133del	p.Ser20PhefsTer41	p.S20Ffs*41	ENST00000276925	NM_004936.3	19	gcCAGCGCCGCGGCGCGGGGACTAGTGGAGAAGGTGCGACAGCTCCTGGAAGCCGGCGCGGATCCCAACGGAGTCAACCgt/gcgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0062489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			3	311	404	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37864778	37864778	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			7	199	364	0	ENST00000269571.5:c.430A>G	p.Ser144Gly	p.S144G	ENST00000269571		144	Agc/Ggc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38963095	38963095	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	87	289	0	ENST00000357387.3:c.1449G>C	p.Lys483Asn	p.K483N	ENST00000357387	NM_152756.3	483	aaG/aaC																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245304	53245304	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0062489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	103	411	0	ENST00000375401.3:c.733A>T	p.Met245Leu	p.M245L	ENST00000375401	NM_004187.3	245	Atg/Ttg																																																																															
BTK	695	MSKCC	GRCh37	X	100617628	100617628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	81	312	0	ENST00000308731.7:c.441G>T	p.Trp147Cys	p.W147C	ENST00000308731	NM_000061.2	147	tgG/tgT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242487	+	protein_altering_variant	In_Frame_Del	DEL	GAATTAAGAGAAGCAACATCTC	GAATTAAGAGAAGCAACATCTC	ATCT			P-0062489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	309	290	0	ENST00000275493.2:c.2236_2257delinsATCT	p.Glu746_Pro753delinsIleSer	p.E746_P753delinsIS	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCAACATCTCcg/ATCTcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0062491-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	20	326	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
AR	367	MSKCC	GRCh37	X	66765173	66765173	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs746341152		P-0062491-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			761	75	84	1	ENST00000374690.3:c.185A>T	p.Gln62Leu	p.Q62L	ENST00000374690	NM_000044.3	62	cAg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0062567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	405	909	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175225	112175225	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0062567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	156	717	0	ENST00000257430.4:c.3934G>T	p.Gly1312Ter	p.G1312*	ENST00000257430	NM_000038.5	1312	Gga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112137024	112137024	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	118	487	0	ENST00000257430.4:c.778C>T	p.Gln260Ter	p.Q260*	ENST00000257430	NM_000038.5	260	Cag/Tag																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400765	72400765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	38	508	0	ENST00000357731.5:c.406C>A	p.Gln136Lys	p.Q136K	ENST00000357731	NM_173808.2	136	Caa/Aaa																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125499126	125499126	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0062567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	113	608	0	ENST00000428830.2:c.290-1G>C		p.X97_splice	ENST00000428830	NM_001114121.2	97																																																																																
BRAF	673	MSKCC	GRCh37	7	140477812	140477812	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	116	577	0	ENST00000288602.6:c.1496A>G	p.Lys499Arg	p.K499R	ENST00000288602	NM_004333.4	499	aAa/aGa																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0062571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	123	533	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0062571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	111	648	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514495		P-0062571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	340	1079	0	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0062571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	186	848	0	ENST00000257430.4:c.4473del	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs786201057		P-0062571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	218	869	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																															
BCL10	8915	MSKCC	GRCh37	1	85736510	85736511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs387906351		P-0062571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	96	697	1	ENST00000370580.1:c.136dup	p.Ile46AsnfsTer4	p.I46Nfs*4	ENST00000370580	NM_003921.4	46	ata/aAta																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440488	49440488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			883	270	986	0	ENST00000301067.7:c.4322G>A	p.Arg1441His	p.R1441H	ENST00000301067	NM_003482.3	1441	cGc/cAc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372308	55372308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			758	308	1160	0	ENST00000297316.4:c.998C>T	p.Pro333Leu	p.P333L	ENST00000297316	NM_022454.3	333	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0062574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	29	736	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784113	9784113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771951762		P-0062574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	39	850	0	ENST00000377346.4:c.2681G>A	p.Arg894Gln	p.R894Q	ENST00000377346	NM_005026.3	894	cGg/cAg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225365173	225365173	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1180155404		P-0062574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	10	695	1	ENST00000264414.4:c.1517G>A	p.Arg506Gln	p.R506Q	ENST00000264414	NM_003590.4	506	cGg/cAg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270592	98270592	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1199437529		P-0062574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			840	113	555	1	ENST00000331920.6:c.52A>G	p.Ser18Gly	p.S18G	ENST00000331920	NM_000264.3	18	Agc/Ggc																																																																															
RET	5979	MSKCC	GRCh37	10	43622119	43622120	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0062574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	46	855	0	ENST00000355710.3:c.3142dup	p.Leu1048ProfsTer11	p.L1048Pfs*11	ENST00000355710	NM_020975.4	1046	gcc/gCcc																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230459302	230459302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	32	825	1	ENST00000525115.1:c.1237G>A	p.Ala413Thr	p.A413T	ENST00000525115		413	Gcc/Acc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246518385	246518385	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs146113064		P-0062574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	20	639	1	ENST00000388985.4:c.176T>C	p.Leu59Pro	p.L59P	ENST00000388985		59	cTg/cCg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426699	121426699	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			74	29	964	0	ENST00000257555.6:c.390G>T	p.Gln130His	p.Q130H	ENST00000257555		130	caG/caT																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5273570	5273571	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0062574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	13	856	0	ENST00000357368.4:c.261_262insT	p.Gly88TrpfsTer15	p.G88Wfs*15	ENST00000357368	NM_002850.3	87	-/T																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807375	1807375	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			805	78	877	0	ENST00000260795.2:c.1624C>A	p.Leu542Met	p.L542M	ENST00000260795		542	Ctg/Atg																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032045	26032045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	22	1182	0	ENST00000244661.2:c.244G>A	p.Asp82Asn	p.D82N	ENST00000244661	NM_003537.3	82	Gat/Aat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845632	151845632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	10	953	0	ENST00000262189.6:c.13380G>A	p.Met4460Ile	p.M4460I	ENST00000262189	NM_170606.2	4460	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0062576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	177	843	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2185868	2185868	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	127	602	0	ENST00000398665.3:c.140A>T	p.Glu47Val	p.E47V	ENST00000398665	NM_032482.2	47	gAa/gTa																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0062576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	151	698	1	ENST00000257430.4:c.3919dup	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0062576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	140	669	1				ENST00000310581	NM_198253.2																																																																																	
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0062576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	113	417	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981171	201981171	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0062576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			699	223	836	0	ENST00000359651.3:c.251del	p.Lys84SerfsTer71	p.K84Sfs*71	ENST00000359651		84	Aag/ag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132515	11132515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	194	935	0	ENST00000344626.4:c.2731G>A	p.Gly911Ser	p.G911S	ENST00000344626	NM_003072.3	911	Ggc/Agc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566874	212566874	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	187	779	0	ENST00000342788.4:c.1307T>C	p.Ile436Thr	p.I436T	ENST00000342788	NM_005235.2	436	aTc/aCc																																																																															
APC	324	MSKCC	GRCh37	5	112137043	112137043	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0062576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	100	555	0	ENST00000257430.4:c.797del	p.Val266GlyfsTer27	p.V266Gfs*27	ENST00000257430	NM_000038.5	266	gTg/gg																																																																															
MET	4233	MSKCC	GRCh37	7	116339742	116339742	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	186	774	0	ENST00000397752.3:c.604A>C	p.Asn202His	p.N202H	ENST00000397752	NM_000245.2	202	Aat/Cat																																																																															
ATRX	546	MSKCC	GRCh37	X	76845352	76845352	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062576-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	78	531	0	ENST00000373344.5:c.6169G>C	p.Ala2057Pro	p.A2057P	ENST00000373344	NM_000489.3	2057	Gct/Cct																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527764	103527764	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062584-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	168	867	0	ENST00000355739.4:c.3072G>T	p.Arg1024Ser	p.R1024S	ENST00000355739	NM_000123.3	1024	agG/agT																																																																															
MTOR	2475	MSKCC	GRCh37	1	11291383	11291383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	60	519	0	ENST00000361445.4:c.2623G>A	p.Glu875Lys	p.E875K	ENST00000361445	NM_004958.3	875	Gag/Aag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481689	56481689	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	43	652	0	ENST00000267101.3:c.724G>C	p.Asp242His	p.D242H	ENST00000267101	NM_001982.3	242	Gac/Cac																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112891019	112891019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	35	373	0	ENST00000351677.2:c.353C>G	p.Ser118Cys	p.S118C	ENST00000351677	NM_002834.3	118	tCt/tGt																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112891115	112891115	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	65	473	0	ENST00000351677.2:c.449C>G	p.Ser150Cys	p.S150C	ENST00000351677	NM_002834.3	150	tCt/tGt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0062588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	257	464	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457593	67457593	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0062588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	59	679	0	ENST00000327367.4:c.403C>G	p.Leu135Val	p.L135V	ENST00000327367	NM_005902.3	135	Cta/Gta																																																																															
CDH1	999	MSKCC	GRCh37	16	68835718	68835718	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	98	604	0	ENST00000261769.5:c.309G>A	p.Trp103Ter	p.W103*	ENST00000261769	NM_004360.3	103	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G	rs587782272		P-0062588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	83	391	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
NF1	4763	MSKCC	GRCh37	17	29556367	29556367	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	51	489	0	ENST00000358273.4:c.2734C>T	p.Gln912Ter	p.Q912*	ENST00000358273	NM_001042492.2	912	Caa/Taa																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099252	4099252	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	54	579	1	ENST00000262948.5:c.866G>C	p.Gly289Ala	p.G289A	ENST00000262948	NM_030662.3	289	gGa/gCa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280738	41280738	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	50	532	0	ENST00000349496.5:c.2251G>C	p.Asp751His	p.D751H	ENST00000349496	NM_001904.3	751	Gat/Cat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922324	178922324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793732		P-0062588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	12	230	0	ENST00000263967.3:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000263967	NM_006218.2	365	Gaa/Aaa																																																																															
TET2	54790	MSKCC	GRCh37	4	106156716	106156716	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062588-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	32	558	0	ENST00000380013.4:c.1617G>C	p.Glu539Asp	p.E539D	ENST00000380013	NM_001127208.2	539	gaG/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0060237-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	151	641	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57474013	57474014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0060237-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	138	613	0	ENST00000371085.3:c.231_232insTG	p.Gln78CysfsTer23	p.Q78Cfs*23	ENST00000371085	NM_000516.4	77	ccg/ccGTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782329		P-0061954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	121	418	0	ENST00000269305.4:c.746G>C	p.Arg249Thr	p.R249T	ENST00000269305	NM_001126112.2	249	aGg/aCg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249092	55249092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1172	148	418	0	ENST00000275493.2:c.2390G>C	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	tGc/tCc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56174868	56174868	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0061954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	85	357	0	ENST00000399503.3:c.2028del	p.Gln677ArgfsTer8	p.Q677Rfs*8	ENST00000399503	NM_005921.1	676	cTt/ct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249013	55249014	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACCCTGGCC			P-0061954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	857	478	1	ENST00000275493.2:c.2315_2316insTGGCCACCC	p.Pro772_His773insGlyHisPro	p.P772_H773insGHP	ENST00000275493	NM_005228.3	771	aac/aACCCTGGCCac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061250	38061250	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1459219194		P-0062382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	72	818	0	ENST00000250448.2:c.739C>T	p.His247Tyr	p.H247Y	ENST00000250448	NM_004496.3	247	Cac/Tac																																																																															
WT1	7490	MSKCC	GRCh37	11	32449492	32449503	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCTTCCTACCT	GCCTTCCTACCT	-			P-0062382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	19	452	0	ENST00000332351.3:c.871_872+10del		p.X291_splice	ENST00000332351	NM_024426.4	291																																																																																
ARID2	196528	MSKCC	GRCh37	12	46287237	46287237	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	52	690	0	ENST00000334344.6:c.5182A>G	p.Arg1728Gly	p.R1728G	ENST00000334344	NM_152641.2	1728	Aga/Gga																																																																															
MSI1	4440	MSKCC	GRCh37	12	120783423	120783423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	56	645	0	ENST00000257552.2:c.1060G>A	p.Ala354Thr	p.A354T	ENST00000257552	NM_002442.3	354	Gcc/Acc																																																																															
POLE	5426	MSKCC	GRCh37	12	133240657	133240657	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	22	649	0	ENST00000320574.5:c.2639C>G	p.Thr880Arg	p.T880R	ENST00000320574	NM_006231.2	880	aCg/aGg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99491933	99491933	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	33	683	0	ENST00000268035.6:c.3718A>G	p.Met1240Val	p.M1240V	ENST00000268035	NM_000875.3	1240	Atg/Gtg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223746	36223746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	34	927	0	ENST00000222270.7:c.6296C>T	p.Ala2099Val	p.A2099V	ENST00000222270	NM_014727.1	2099	gCa/gTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877454	40877461	+	protein_altering_variant,splice_region_variant	In_Frame_Del	DEL	TGGAGGCA	TGGAGGCA	AATTC			P-0062382-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	29	723	0	ENST00000373198.4:c.2235_2242delinsGAATT	p.Ala746_Thr748delinsAsnSer	p.A746_T748delinsNS	ENST00000373198	NM_133170.3	745	ggTGCCTCCAcc/ggGAATTcc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851876	134851876	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062383-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	25	779	0	ENST00000398015.3:c.1282A>C	p.Thr428Pro	p.T428P	ENST00000398015	NM_004441.4	428	Acc/Ccc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0062389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	22	363	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0062389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			711	78	666	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
STK11	6794	MSKCC	GRCh37	19	1222006	1222006	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0062389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	47	390	0	ENST00000326873.7:c.920+1G>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0062389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	13	294	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
JUN	3725	MSKCC	GRCh37	1	59247901	59247925	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAGCCGGGCGATTCTCTCCAGCT	TCCAGCCGGGCGATTCTCTCCAGCT	-			P-0062389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			818	52	661	0	ENST00000371222.2:c.818_842del	p.Lys273ArgfsTer4	p.K273Rfs*4	ENST00000371222	NM_002228.3	273	aAGCTGGAGAGAATCGCCCGGCTGGAg/ag																																																																															
CDC73	79577	MSKCC	GRCh37	1	193119434	193119434	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0062389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	36	345	0	ENST00000367435.3:c.829G>C	p.Asp277His	p.D277H	ENST00000367435	NM_024529.4	277	Gat/Cat																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106019	8106019	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			849	65	571	0	ENST00000346208.3:c.839G>C	p.Gly280Ala	p.G280A	ENST00000346208		280	gGa/gCa																																																																															
RET	5979	MSKCC	GRCh37	10	43620375	43620375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	59	483	0	ENST00000355710.3:c.2984G>T	p.Arg995Met	p.R995M	ENST00000355710	NM_020975.4	995	aGg/aTg																																																																															
WT1	7490	MSKCC	GRCh37	11	32456383	32456383	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	66	529	0	ENST00000332351.3:c.509del	p.Gly170AlafsTer116	p.G170Afs*116	ENST00000332351	NM_024426.4	170	gGc/gc																																																																															
ATM	472	MSKCC	GRCh37	11	108160470	108160470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	20	291	0	ENST00000278616.4:c.4378G>T	p.Ala1460Ser	p.A1460S	ENST00000278616	NM_000051.3	1460	Gct/Tct																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868054	56868054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			801	76	584	0	ENST00000308159.5:c.1552G>A	p.Gly518Ser	p.G518S	ENST00000308159	NM_014669.4	518	Ggt/Agt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993287	72993287	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			702	64	547	0	ENST00000268489.5:c.758del	p.Ser253ThrfsTer30	p.S253Tfs*30	ENST00000268489	NM_006885.3	253	aGc/ac																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40456585	40456585	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			858	60	650	0	ENST00000345506.4:c.1295C>A	p.Ala432Glu	p.A432E	ENST00000345506	NM_003152.3	432	gCa/gAa																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099221	4099221	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	49	526	0	ENST00000262948.5:c.897G>T	p.Arg299Ser	p.R299S	ENST00000262948	NM_030662.3	299	agG/agT																																																																															
SOS1	6654	MSKCC	GRCh37	2	39262369	39262369	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	19	315	0	ENST00000402219.2:c.1058A>G	p.Tyr353Cys	p.Y353C	ENST00000402219	NM_005633.3	353	tAc/tGc																																																																															
BARD1	580	MSKCC	GRCh37	2	215632225	215632225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	28	331	0	ENST00000260947.4:c.1549G>C	p.Gly517Arg	p.G517R	ENST00000260947	NM_000465.2	517	Gga/Cga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178715	32178715	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0062389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	33	428	0	ENST00000375023.3:c.2681-2A>T		p.X894_splice	ENST00000375023	NM_004557.3	894																																																																																
CCND3	896	MSKCC	GRCh37	6	41904987	41904987	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			814	52	573	0	ENST00000372991.4:c.560C>G	p.Ala187Gly	p.A187G	ENST00000372991	NM_001760.3	187	gCc/gGc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200296	138200296	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1430601409		P-0062389-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			796	60	671	0	ENST00000237289.4:c.1714C>T	p.Arg572Trp	p.R572W	ENST00000237289	NM_001270507.1	572	Cgg/Tgg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185198285	185198285	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1331568030		P-0000462-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			399	62	289	0	ENST00000265026.3:c.2767G>A	p.Gly923Ser	p.G923S	ENST00000265026	NM_004721.4	923	Ggc/Agc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717630	89717630	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000462-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	28	278	0	ENST00000371953.3:c.655C>T	p.Gln219Ter	p.Q219*	ENST00000371953	NM_000314.4	219	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692819	89692820	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000462-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			154	18	145	0	ENST00000371953.3:c.306dup	p.Pro103ThrfsTer4	p.P103Tfs*4	ENST00000371953	NM_000314.4	101	-/A																																																																															
MEN1	4221	MSKCC	GRCh37	11	64571839	64571840	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000462-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1077	68	751	0	ENST00000337652.1:c.1814dup	p.Ser606ValfsTer78	p.S606Vfs*78	ENST00000337652	NM_130803.2	605	ctg/ctTg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198268361	198268361	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000675-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			584	54	207	0	ENST00000335508.6:c.1667T>C	p.Ile556Thr	p.I556T	ENST00000335508	NM_012433.2	556	aTt/aCt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879364	151879364	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000675-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			587	41	257	0	ENST00000262189.6:c.5581del	p.Arg1861GlyfsTer78	p.R1861Gfs*78	ENST00000262189	NM_170606.2	1861	Cgg/gg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0005094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1187	125	466	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs587781525		P-0005094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1130	125	564	0	ENST00000269305.4:c.842A>T	p.Asp281Val	p.D281V	ENST00000269305	NM_001126112.2	281	gAc/gTc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945413	17945413	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1295	138	576	0	ENST00000458235.1:c.2317G>T	p.Val773Phe	p.V773F	ENST00000458235	NM_000215.3	773	Gtc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	47	433	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0006523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	50	553	1	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987163	36987163	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	18	304	0	ENST00000354822.5:c.526C>G	p.Leu176Val	p.L176V	ENST00000354822	NM_001079668.2	176	Ctg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578179	7578179	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0006827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	108	518	0	ENST00000269305.4:c.670G>T	p.Glu224Ter	p.E224*	ENST00000269305	NM_001126112.2	224	Gag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255496	16255496	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	54	376	0	ENST00000375759.3:c.2761C>T	p.Gln921Ter	p.Q921*	ENST00000375759	NM_015001.2	921	Cag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255572	16255572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	70	473	1	ENST00000375759.3:c.2837C>T	p.Ser946Leu	p.S946L	ENST00000375759	NM_015001.2	946	tCa/tTa																																																																															
TET1	80312	MSKCC	GRCh37	10	70332864	70332864	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1150	99	490	0	ENST00000373644.4:c.769A>G	p.Thr257Ala	p.T257A	ENST00000373644	NM_030625.2	257	Acc/Gcc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188188	32188188	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370312303		P-0007066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	132	277	0	ENST00000375023.3:c.1153C>T	p.Arg385Cys	p.R385C	ENST00000375023	NM_004557.3	385	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578503	7578507	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGG	CAGGG	-			P-0007066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	407	501	0	ENST00000269305.4:c.423_427del	p.Pro142AlafsTer5	p.P142Afs*5	ENST00000269305	NM_001126112.2	141	tgCCCTGtg/tgtg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356279	66356279	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	124	391	0	ENST00000273854.3:c.1218G>C	p.Glu406Asp	p.E406D	ENST00000273854	NM_004439.5	406	gaG/gaC																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971262	13971262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	123	392	0	ENST00000405192.2:c.667C>T	p.Pro223Ser	p.P223S	ENST00000405192	NM_001163147.1	223	Cca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0007490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	150	321	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0007490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	94	265	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001104	150001104	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	153	421	0	ENST00000253339.5:c.2500A>G	p.Ile834Val	p.I834V	ENST00000253339		834	Att/Gtt																																																																															
APC	324	MSKCC	GRCh37	5	112175751	112175752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTA			P-0007490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	111	266	0	ENST00000257430.4:c.4463_4466dup	p.Leu1489PhefsTer26	p.L1489Ffs*26	ENST00000257430	NM_000038.5	1487	act/acTTTAt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592132	67592144	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAGCAGTAAAC	GAGAGCAGTAAAC	-			P-0007490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	139	299	0	ENST00000274335.5:c.1948_1960del	p.Glu650ArgfsTer8	p.E650Rfs*8	ENST00000274335		650	GAGAGCAGTAAACag/ag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0009864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	5039	471	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RB1	5925	MSKCC	GRCh37	13	48954210	48954210	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1354030520		P-0009864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	80	446	0	ENST00000267163.4:c.1411C>T	p.Gln471Ter	p.Q471*	ENST00000267163	NM_000321.2	471	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-	rs587780067		P-0009864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	138	344	0	ENST00000269305.4:c.365_366del	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																															
KDM5A	5927	MSKCC	GRCh37	12	432811	432811	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	118	502	0	ENST00000399788.2:c.2105A>G	p.His702Arg	p.H702R	ENST00000399788	NM_001042603.1	702	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	136	304	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0010599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	423	398	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649926	88649926	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	110	293	0	ENST00000372037.3:c.175T>A	p.Leu59Ile	p.L59I	ENST00000372037	NM_004329.2	59	Tta/Ata																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436705	110436705	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1726	108	513	0	ENST00000375856.3:c.1696G>T	p.Asp566Tyr	p.D566Y	ENST00000375856	NM_003749.2	566	Gac/Tac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061607	38061607	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	32	146	0	ENST00000250448.2:c.382G>T	p.Gly128Cys	p.G128C	ENST00000250448	NM_004496.3	128	Ggc/Tgc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969920	81969920	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1699	173	793	0	ENST00000359376.3:c.2989T>C	p.Tyr997His	p.Y997H	ENST00000359376	NM_002661.3	997	Tac/Cac																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608322	28608322	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	184	428	1	ENST00000241453.7:c.1734G>T	p.Met578Ile	p.M578I	ENST00000241453	NM_004119.2	578	atG/atT																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591104	67591115	+	inframe_deletion	In_Frame_Del	DEL	TTAAACCAGACC	TTAAACCAGACC	-			P-0010688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	86	277	0	ENST00000274335.5:c.1700_1711del	p.Lys567_Leu570del	p.K567_L570del	ENST00000274335		566	aTTAAACCAGACCtt/att																																																																															
REL	5966	MSKCC	GRCh37	2	61147574	61147574	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1476158837		P-0010688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	82	88	1	ENST00000295025.8:c.979G>A	p.Asp327Asn	p.D327N	ENST00000295025	NM_002908.2	327	Gat/Aat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187525544	187525544	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0010688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1141	173	533	0	ENST00000441802.2:c.10535T>A	p.Leu3512Ter	p.L3512*	ENST00000441802	NM_005245.3	3512	tTa/tAa																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514219	69514219	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1097	211	556	1	ENST00000294312.3:c.462C>A	p.Tyr154Ter	p.Y154*	ENST00000294312	NM_005117.2	154	taC/taA																																																																															
POLE	5426	MSKCC	GRCh37	12	133252337	133252337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	333	503	0	ENST00000320574.5:c.1090G>A	p.Gly364Arg	p.G364R	ENST00000320574	NM_006231.2	364	Ggg/Agg																																																																															
POLE	5426	MSKCC	GRCh37	12	133252685	133252685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	160	459	0	ENST00000320574.5:c.1015G>T	p.Asp339Tyr	p.D339Y	ENST00000320574	NM_006231.2	339	Gat/Tat																																																																															
FLT1	2321	MSKCC	GRCh37	13	28895610	28895610	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	187	503	0	ENST00000282397.4:c.3164G>C	p.Arg1055Thr	p.R1055T	ENST00000282397	NM_002019.4	1055	aGa/aCa																																																																															
AXL	558	MSKCC	GRCh37	19	41754689	41754689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1196	234	594	1	ENST00000301178.4:c.1675G>T	p.Asp559Tyr	p.D559Y	ENST00000301178	NM_021913.4	559	Gac/Tac																																																																															
EP300	2033	MSKCC	GRCh37	22	41572440	41572440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1245	103	402	0	ENST00000263253.7:c.4969G>C	p.Glu1657Gln	p.E1657Q	ENST00000263253	NM_001429.3	1657	Gag/Cag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965670	93965670	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	749	785	0	ENST00000369303.4:c.2258del	p.Gly753AspfsTer31	p.G753Dfs*31	ENST00000369303	NM_004440.3	753	gGa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578212	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	A			P-0010688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	470	635	1	ENST00000269305.4:c.637_638delinsT	p.Arg213TyrfsTer34	p.R213Yfs*34	ENST00000269305	NM_001126112.2	213	CGa/Ta																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523009	25523009	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs772542252		P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	392	585	1	ENST00000264709.3:c.176C>T	p.Pro59Leu	p.P59L	ENST00000264709	NM_175629.2	59	cCg/cTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202131354	202131354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	127	311	0	ENST00000358485.4:c.322C>T	p.Gln108Ter	p.Q108*	ENST00000358485	NM_001080125.1	108	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	148	354	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541607	187541607	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	223	297	0	ENST00000441802.2:c.6133G>T	p.Glu2045Ter	p.E2045*	ENST00000441802	NM_005245.3	2045	Gag/Tag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710590	117710590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	300	332	1	ENST00000368508.3:c.1682C>A	p.Pro561Gln	p.P561Q	ENST00000368508	NM_002944.2	561	cCg/cAg																																																																															
RET	5979	MSKCC	GRCh37	10	43601928	43601928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	414	470	0	ENST00000355710.3:c.972G>T	p.Trp324Cys	p.W324C	ENST00000355710	NM_020975.4	324	tgG/tgT																																																																															
FLT1	2321	MSKCC	GRCh37	13	29002059	29002059	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	75	167	0	ENST00000282397.4:c.1107-1G>T		p.X369_splice	ENST00000282397	NM_002019.4	369																																																																																
IRS2	8660	MSKCC	GRCh37	13	110435750	110435750	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	106	78	0	ENST00000375856.3:c.2651G>T	p.Arg884Leu	p.R884L	ENST00000375856	NM_003749.2	884	cGc/cTc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900321	3900321	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750216784		P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	124	533	0	ENST00000262367.5:c.775G>A	p.Ala259Thr	p.A259T	ENST00000262367	NM_004380.2	259	Gca/Aca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223154	5223154	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	283	477	0	ENST00000357368.4:c.2649C>A	p.Phe883Leu	p.F883L	ENST00000357368	NM_002850.3	883	ttC/ttA																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600378	10600378	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	374	598	0	ENST00000171111.5:c.1477G>C	p.Glu493Gln	p.E493Q	ENST00000171111	NM_203500.1	493	Gag/Cag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600447	10600447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	349	494	0	ENST00000171111.5:c.1408C>T	p.Arg470Cys	p.R470C	ENST00000171111	NM_203500.1	470	Cgt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602381	10602381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	338	560	1	ENST00000171111.5:c.1197G>A	p.Met399Ile	p.M399I	ENST00000171111	NM_203500.1	399	atG/atA																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44928896	44928914	+	frameshift_variant	Frame_Shift_Del	DEL	TCCCAGCATCTCCAGGCAG	TCCCAGCATCTCCAGGCAG	-			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	188	290	0	ENST00000377967.4:c.1996_2014del	p.Ser666LeufsTer19	p.S666Lfs*19	ENST00000377967	NM_021140.2	666	TCCCAGCATCTCCAGGCAGct/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577522	7577522	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	255	436	0	ENST00000269305.4:c.759del	p.Ile254SerfsTer91	p.I254Sfs*91	ENST00000269305	NM_001126112.2	253	acC/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577593	7577593	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	219	327	0	ENST00000269305.4:c.688del	p.Thr230ProfsTer17	p.T230Pfs*17	ENST00000269305	NM_001126112.2	230	Acc/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	181	242	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0017573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			404	141	425	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782329		P-0017573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			329	256	537	0	ENST00000269305.4:c.746G>C	p.Arg249Thr	p.R249T	ENST00000269305	NM_001126112.2	249	aGg/aCg																																																																															
ATR	545	MSKCC	GRCh37	3	142217605	142217605	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			545	129	379	0	ENST00000350721.4:c.5392A>G	p.Thr1798Ala	p.T1798A	ENST00000350721	NM_001184.3	1798	Aca/Gca																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118944	115118944	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			209	83	215	0	ENST00000257566.3:c.397T>G	p.Phe133Val	p.F133V	ENST00000257566	NM_016569.3	133	Ttt/Gtt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518278	187518278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	41	255	1	ENST00000441802.2:c.12416G>T	p.Gly4139Val	p.G4139V	ENST00000441802	NM_005245.3	4139	gGg/gTg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17743008	17743008	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	58	721	1	ENST00000250003.3:c.916C>A	p.Gln306Lys	p.Q306K	ENST00000250003	NM_002478.4	306	Cag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108098570	108098570	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs774185390		P-0017794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	106	440	0	ENST00000278616.4:c.140C>G	p.Ser47Ter	p.S47*	ENST00000278616	NM_000051.3	47	tCa/tGa																																																																															
ATM	472	MSKCC	GRCh37	11	108098599	108098599	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	82	363	0	ENST00000278616.4:c.169T>G	p.Trp57Gly	p.W57G	ENST00000278616	NM_000051.3	57	Tgg/Ggg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880984	37880985	+	inframe_insertion	In_Frame_Ins	INS	-	-	TACGTGATGGCG			P-0017794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	215	655	0	ENST00000269571.5:c.2324_2325insGTACGTGATGGC	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/TACGTGATGGCG																																																																															
APC	324	MSKCC	GRCh37	5	112103087	112103087	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0017794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	42	272	0	ENST00000257430.4:c.422+1del		p.R141fs	ENST00000257430	NM_000038.5	141	aGg/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	37	880	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0021151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	39	915	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0021691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	46	853	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0021691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	60	893	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EP300	2033	MSKCC	GRCh37	22	41569723	41569723	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs952188763		P-0021691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	48	591	0	ENST00000263253.7:c.4714G>A	p.Gly1572Arg	p.G1572R	ENST00000263253	NM_001429.3	1572	Ggg/Agg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944562	40944562	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868189942		P-0022312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	63	566	1	ENST00000373198.4:c.1940C>T	p.Ser647Leu	p.S647L	ENST00000373198	NM_133170.3	647	tCg/tTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097712	27097713	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0022312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	68	744	0	ENST00000324856.7:c.3302_3303del	p.Tyr1101CysfsTer3	p.Y1101Cfs*3	ENST00000324856	NM_006015.4	1101	TAt/t																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111476	8111508	+	frameshift_variant	Frame_Shift_Del	DEL	AGACCACCACAACCACACTCTGGAGGAGGAATG	AGACCACCACAACCACACTCTGGAGGAGGAATG	TGGCATT			P-0022312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	66	784	3	ENST00000346208.3:c.962_994delinsTGGCATT	p.Gln321LeufsTer22	p.Q321Lfs*22	ENST00000346208		321	cAGACCACCACAACCACACTCTGGAGGAGGAATGcc/cTGGCATTcc																																																																															
CCND1	595	MSKCC	GRCh37	11	69465961	69465961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2152	155	880	1	ENST00000227507.2:c.799G>A	p.Asp267Asn	p.D267N	ENST00000227507	NM_053056.2	267	Gac/Aac																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514193	69514193	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs764070084		P-0022312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1997	113	728	0	ENST00000294312.3:c.488C>G	p.Ser163Cys	p.S163C	ENST00000294312	NM_005117.2	163	tCt/tGt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557528	21557528	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775075244		P-0022312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	95	735	5	ENST00000382592.4:c.2317G>A	p.Ala773Thr	p.A773T	ENST00000382592	NM_014572.2	773	Gca/Aca																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688747	47688747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	88	469	0	ENST00000347630.2:c.553C>T	p.Arg185Trp	p.R185W	ENST00000347630	NM_001007230.1	185	Cgg/Tgg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502882	186502882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	94	450	0	ENST00000323963.5:c.340G>T	p.Ala114Ser	p.A114S	ENST00000323963		114	Gct/Tct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0022830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	74	798	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931588		P-0022830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	21	593	1	ENST00000349496.5:c.94G>A	p.Asp32Asn	p.D32N	ENST00000349496	NM_001904.3	32	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577111	7577111	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs786202082		P-0022830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	106	1035	0	ENST00000269305.4:c.827C>G	p.Ala276Gly	p.A276G	ENST00000269305	NM_001126112.2	276	gCc/gGc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30325763	30325763	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777479817		P-0022830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	25	624	2	ENST00000322652.5:c.1961G>A	p.Arg654Gln	p.R654Q	ENST00000322652	NM_015355.2	654	cGa/cAa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78896606	78896606	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	81	900	0	ENST00000306801.3:c.2603G>T	p.Gly868Val	p.G868V	ENST00000306801	NM_020761.2	868	gGc/gTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180685	32180685	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	51	1065	0	ENST00000375023.3:c.2442del	p.Cys815ValfsTer30	p.C815Vfs*30	ENST00000375023	NM_004557.3	814	ccC/cc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504354	8504354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	62	969	0	ENST00000356435.5:c.1729C>A	p.Pro577Thr	p.P577T	ENST00000356435		577	Cca/Aca																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575149	64575149	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	300	585	0	ENST00000337652.1:c.673del	p.Trp225GlyfsTer4	p.W225Gfs*4	ENST00000337652	NM_130803.2	225	Tgg/gg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589637	67589637	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	43	408	0	ENST00000274335.5:c.1400A>G	p.Tyr467Cys	p.Y467C	ENST00000274335		467	tAt/tGt																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271461	26271461	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	31	653	0	ENST00000305910.3:c.152A>G	p.Glu51Gly	p.E51G	ENST00000305910	NM_003534.2	51	gAg/gGg																																																																															
ATRX	546	MSKCC	GRCh37	X	76940022	76940022	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12	169	344	0	ENST00000373344.5:c.726del	p.Lys242AsnfsTer15	p.K242Nfs*15	ENST00000373344	NM_000489.3	242	aaA/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	356	426	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	172	590	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797429	45797429	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151316420		P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	80	726	1	ENST00000372115.3:c.1048C>T	p.Arg350Cys	p.R350C	ENST00000372115	NM_001048171.1	350	Cgc/Tgc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195614	102195614	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	60	405	0	ENST00000263464.3:c.374T>A	p.Leu125His	p.L125H	ENST00000263464	NM_001165.4	125	cTt/cAt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373764	118373764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	51	358	0	ENST00000534358.1:c.7157C>T	p.Thr2386Ile	p.T2386I	ENST00000534358	NM_005933.3	2386	aCa/aTa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230550	46230550	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	134	310	0	ENST00000334344.6:c.799G>T	p.Glu267Ter	p.E267*	ENST00000334344	NM_152641.2	267	Gag/Tag																																																																															
POLE	5426	MSKCC	GRCh37	12	133233721	133233721	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	99	305	0	ENST00000320574.5:c.3582+1G>T		p.X1194_splice	ENST00000320574	NM_006231.2	1194																																																																																
CCNE1	898	MSKCC	GRCh37	19	30313391	30313391	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1280438075		P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	170	606	0	ENST00000262643.3:c.991A>T	p.Met331Leu	p.M331L	ENST00000262643	NM_001238.2	331	Atg/Ttg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500473	149500473	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	199	521	0	ENST00000261799.4:c.2564C>A	p.Ser855Ter	p.S855*	ENST00000261799	NM_002609.3	855	tCg/tAg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87636204	87636204	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	51	412	0	ENST00000277120.3:c.2369G>T	p.Arg790Leu	p.R790L	ENST00000277120		790	cGa/cTa																																																																															
RXRA	6256	MSKCC	GRCh37	9	137325976	137325976	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	158	688	0	ENST00000481739.1:c.1164G>T	p.Glu388Asp	p.E388D	ENST00000481739	NM_002957.4	388	gaG/gaT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040621	47040621	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	115	222	0	ENST00000329236.7:c.1023del	p.Gly342ValfsTer65	p.G342Vfs*65	ENST00000329236	NM_001204466.1	341	cAa/ca																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239728	53239728	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	145	296	0	ENST00000375401.3:c.1614del	p.Ser539HisfsTer10	p.S539Hfs*10	ENST00000375401	NM_004187.3	538	ccC/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0031078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	85	365	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0031078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	96	162	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	71	354	0	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107090	27107091	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	79	330	0	ENST00000324856.7:c.6702dup	p.Ala2235CysfsTer43	p.A2235Cfs*43	ENST00000324856	NM_006015.4	2234	gct/gcTt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711289	114711289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	200	245	0	ENST00000543371.1:c.304G>T	p.Gly102Cys	p.G102C	ENST00000543371	NM_001198531.1	102	Ggc/Tgc																																																																															
SMO	6608	MSKCC	GRCh37	7	128849178	128849178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	59	411	1	ENST00000249373.3:c.1406G>A	p.Cys469Tyr	p.C469Y	ENST00000249373	NM_005631.4	469	tGc/tAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168726	56168727	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	200	419	0	ENST00000399503.3:c.1583dup	p.Leu528PhefsTer13	p.L528Ffs*13	ENST00000399503	NM_005921.1	527	cct/ccTt																																																																															
POLE	5426	MSKCC	GRCh37	12	133218357	133218357	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1335665224		P-0032706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	208	661	0	ENST00000320574.5:c.5254G>T	p.Asp1752Tyr	p.D1752Y	ENST00000320574	NM_006231.2	1752	Gac/Tac																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626967	14626967	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	169	681	0	ENST00000254322.2:c.808A>G	p.Thr270Ala	p.T270A	ENST00000254322	NM_006145.1	270	Aca/Gca																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185198283	185198284	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCAA			P-0032706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	235	455	0	ENST00000265026.3:c.2767_2772dup	p.Gly923_Lys924dup	p.G923_K924dup	ENST00000265026	NM_004721.4	923	ctg/ctGGGCAAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411931	63411950	+	frameshift_variant	Frame_Shift_Del	DEL	AGTTTCCCACAGATATTCTA	AGTTTCCCACAGATATTCTA	-			P-0032706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	56	806	0	ENST00000330258.3:c.1217_1236del	p.Leu406CysfsTer28	p.L406Cfs*28	ENST00000330258	NM_152424.3	406	tTAGAATATCTGTGGGAAACT/t																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164722	47164741	+	frameshift_variant	Frame_Shift_Del	DEL	TGTCTTCTTATACTCTTCTT	TGTCTTCTTATACTCTTCTT	-			P-0032952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	266	425	0	ENST00000409792.3:c.1385_1404del	p.Glu462ValfsTer22	p.E462Vfs*22	ENST00000409792	NM_014159.6	462	gAAGAAGAGTATAAGAAGACA/g																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287182	33287182	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	429	578	0	ENST00000374542.5:c.1915del	p.Thr639GlnfsTer6	p.T639Qfs*6	ENST00000374542	NM_001141970.1	639	Aca/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	84	420	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121912666		P-0033017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	98	541	0	ENST00000269305.4:c.659A>C	p.Tyr220Ser	p.Y220S	ENST00000269305	NM_001126112.2	220	tAt/tCt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593418	48593418	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	85	362	0	ENST00000342988.3:c.1170del	p.Glu390AspfsTer25	p.E390Dfs*25	ENST00000342988	NM_005359.5	390	gAa/ga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0033309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	65	469	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934574		P-0033309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	108	833	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262249	16262249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	29	224	0	ENST00000375759.3:c.9514C>T	p.Pro3172Ser	p.P3172S	ENST00000375759	NM_015001.2	3172	Cct/Tct																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879806	37879806	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	73	583	0	ENST00000269571.5:c.2101A>T	p.Thr701Ser	p.T701S	ENST00000269571		701	Aca/Tca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	122	504	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	118	365	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0033725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	101	386	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174106	112174106	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0033725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	106	376	0	ENST00000257430.4:c.2815A>T	p.Lys939Ter	p.K939*	ENST00000257430	NM_000038.5	939	Aag/Tag																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004362	150004362	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	155	618	0	ENST00000253339.5:c.1863G>C	p.Lys621Asn	p.K621N	ENST00000253339		621	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7579521	7579521	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	158	688	1	ENST00000269305.4:c.166del	p.Glu56LysfsTer67	p.E56Kfs*67	ENST00000269305	NM_001126112.2	56	Gaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112128142	112128142	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0035726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	85	274	0	ENST00000257430.4:c.646-1G>A		p.X216_splice	ENST00000257430	NM_000038.5	216																																																																																
RASA1	5921	MSKCC	GRCh37	5	86675658	86675659	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	73	246	0	ENST00000274376.6:c.2595dup	p.Leu866ThrfsTer19	p.L866Tfs*19	ENST00000274376	NM_002890.2	865	ata/atAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	129	144	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395101	139395101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777423973		P-0036117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	71	375	1	ENST00000277541.6:c.5837G>A	p.Arg1946His	p.R1946H	ENST00000277541	NM_017617.3	1946	cGc/cAc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456500	32456514	+	inframe_deletion	In_Frame_Del	DEL	GGTGGCGGCGGAGCC	GGTGGCGGCGGAGCC	-			P-0036117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	15	69	0	ENST00000332351.3:c.378_392del	p.Ala127_Pro131del	p.A127_P131del	ENST00000332351	NM_024426.4	126	ccGGCTCCGCCGCCACCc/ccc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579356	7579356	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	370	206	0	ENST00000269305.4:c.331del	p.Leu111TrpfsTer12	p.L111Wfs*12	ENST00000269305	NM_001126112.2	111	Ctg/tg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0040003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	266	283	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0040003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	209	460	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
APC	324	MSKCC	GRCh37	5	112175925	112175925	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	88	162	0	ENST00000257430.4:c.4634C>A	p.Ser1545Ter	p.S1545*	ENST00000257430	NM_000038.5	1545	tCa/tAa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31504699	31504699	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1032572786		P-0040003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	374	433	1	ENST00000344624.3:c.1631G>A	p.Arg544His	p.R544H	ENST00000344624		544	cGc/cAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	84	475	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713870	30713870	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1023568316		P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	335	734	0	ENST00000359013.4:c.1270G>C	p.Gly424Arg	p.G424R	ENST00000359013	NM_001024847.2	424	Ggg/Cgg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	56	284	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	67	470	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967215	134967215	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	104	648	2	ENST00000398015.3:c.2554G>T	p.Ala852Ser	p.A852S	ENST00000398015	NM_004441.4	852	Gct/Tct																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	71	445	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																															
TET2	54790	MSKCC	GRCh37	4	106157822	106157822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	43	324	0	ENST00000380013.4:c.2723G>A	p.Gly908Asp	p.G908D	ENST00000380013	NM_001127208.2	908	gGt/gAt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59876485	59876485	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753214212		P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	80	464	1	ENST00000259008.2:c.1316G>A	p.Arg439Gln	p.R439Q	ENST00000259008	NM_032043.2	439	cGa/cAa																																																																															
KDR	3791	MSKCC	GRCh37	4	55991403	55991403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	153	807	1	ENST00000263923.4:c.58G>A	p.Ala20Thr	p.A20T	ENST00000263923	NM_002253.2	20	Gcc/Acc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389318	8389318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	80	674	0	ENST00000356435.5:c.4300G>A	p.Glu1434Lys	p.E1434K	ENST00000356435		1434	Gaa/Aaa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844393	156844395	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs768558242		P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	165	915	0	ENST00000524377.1:c.1231_1233del	p.Lys411del	p.K411del	ENST00000524377	NM_002529.3	409	gAGAag/gag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993366	72993366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140855443		P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	171	829	2	ENST00000268489.5:c.679G>A	p.Val227Ile	p.V227I	ENST00000268489	NM_006885.3	227	Gtc/Atc																																																																															
POLE	5426	MSKCC	GRCh37	12	133218864	133218864	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1235110857		P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	163	807	0	ENST00000320574.5:c.5072G>A	p.Arg1691His	p.R1691H	ENST00000320574	NM_006231.2	1691	cGc/cAc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120611974	120611974	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	12	39	0	ENST00000256646.2:c.47G>A	p.Trp16Ter	p.W16*	ENST00000256646	NM_024408.3	16	tGg/tAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5215552	5215552	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs114166264		P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	201	792	0	ENST00000357368.4:c.4151G>A	p.Arg1384Gln	p.R1384Q	ENST00000357368	NM_002850.3	1384	cGg/cAg																																																																															
CASP8	841	MSKCC	GRCh37	2	202123071	202123072	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	95	502	0	ENST00000358485.4:c.117_118delinsAA	p.Glu40Lys	p.E40K	ENST00000358485	NM_001080125.1	39	tcGGag/tcAAag																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374244	138374244	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	120	565	0	ENST00000289153.2:c.3200A>C	p.Asp1067Ala	p.D1067A	ENST00000289153	NM_006219.2	1067	gAc/gCc																																																																															
CASP8	841	MSKCC	GRCh37	2	202123072	202123072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	95	498	0	ENST00000358485.4:c.118G>A	p.Glu40Lys	p.E40K	ENST00000358485	NM_001080125.1	40	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0043514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	249	424	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98221945	98221945	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756465236		P-0043514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	162	599	0	ENST00000331920.6:c.2824C>T	p.Arg942Trp	p.R942W	ENST00000331920	NM_000264.3	942	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	167	398	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0044369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	243	691	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951964	178951964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	89	486	0	ENST00000263967.3:c.3019G>C	p.Gly1007Arg	p.G1007R	ENST00000263967	NM_006218.2	1007	Ggc/Cgc																																																																															
APC	324	MSKCC	GRCh37	5	112177660	112177660	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0044369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	55	392	0	ENST00000257430.4:c.6369T>A	p.Cys2123Ter	p.C2123*	ENST00000257430	NM_000038.5	2123	tgT/tgA																																																																															
TEK	7010	MSKCC	GRCh37	9	27185544	27185545	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	241	548	0	ENST00000380036.4:c.1250dup	p.Asp418Ter	p.D418*	ENST00000380036	NM_000459.3	415	ctc/ctCc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138095	64138095	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	65	516	0	ENST00000334205.4:c.2018G>T	p.Trp673Leu	p.W673L	ENST00000334205	NM_003942.2	673	tGg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0045889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	125	603	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																															
RARA	5914	MSKCC	GRCh37	17	38512342	38512342	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	109	443	0	ENST00000254066.5:c.1253A>T	p.Glu418Val	p.E418V	ENST00000254066	NM_000964.3	418	gAg/gTg																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140172	50140172	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774218911		P-0045889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	48	464	0	ENST00000246792.3:c.253G>A	p.Ala85Thr	p.A85T	ENST00000246792	NM_006270.3	85	Gcg/Acg																																																																															
ALK	238	MSKCC	GRCh37	2	29416141	29416141	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs753750497		P-0045889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	72	414	0	ENST00000389048.3:c.4812C>A	p.Tyr1604Ter	p.Y1604*	ENST00000389048	NM_004304.4	1604	taC/taA																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156607	55156607	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	84	467	0	ENST00000257290.5:c.3008G>T	p.Trp1003Leu	p.W1003L	ENST00000257290	NM_006206.4	1003	tGg/tTg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86670657	86670657	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0045889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	33	224	0	ENST00000274376.6:c.1935T>G	p.Asp645Glu	p.D645E	ENST00000274376	NM_002890.2	645	gaT/gaG																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710766	117710766	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	44	293	0	ENST00000368508.3:c.1506T>A	p.Phe502Leu	p.F502L	ENST00000368508	NM_002944.2	502	ttT/ttA																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508470	106508470	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1463222028		P-0045889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	24	238	0	ENST00000359195.3:c.464C>T	p.Thr155Met	p.T155M	ENST00000359195	NM_002649.2	155	aCg/aTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404598	8404598	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	104	254	0	ENST00000356435.5:c.4149G>T	p.Lys1383Asn	p.K1383N	ENST00000356435		1383	aaG/aaT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504353	8504353	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	108	416	0	ENST00000356435.5:c.1730C>A	p.Pro577Gln	p.P577Q	ENST00000356435		577	cCa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	54	391	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	96	768	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50820842	50820842	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	33	346	0	ENST00000398568.2:c.2017A>G	p.Thr673Ala	p.T673A	ENST00000398568	NM_001042412.1	673	Acc/Gcc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157488271	157488271	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1358728441		P-0046090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	37	480	0	ENST00000346085.5:c.2977C>T	p.Gln993Ter	p.Q993*	ENST00000346085	NM_020732.3	993	Cag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971206	21971207	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CCTG			P-0046090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	51	464	0	ENST00000304494.5:c.151-3_151dup	p.Val51AlafsTer70	p.V51Afs*70	ENST00000304494	NM_000077.4	51	gtc/gCAGGtc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0047747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	75	355	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882025		P-0047747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	129	689	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022684	12022684	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745867456		P-0047747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	148	632	0	ENST00000396373.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000396373	NM_001987.4	264	Cgc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290231	15290231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	79	1078	0	ENST00000263388.2:c.3404G>A	p.Gly1135Asp	p.G1135D	ENST00000263388	NM_000435.2	1135	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426402	49426402	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	97	1022	0	ENST00000301067.7:c.12086T>G	p.Val4029Gly	p.V4029G	ENST00000301067	NM_003482.3	4029	gTa/gGa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435912	56435912	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	59	704	0	ENST00000407977.2:c.1225C>T	p.Gln409Ter	p.Q409*	ENST00000407977		409	Cag/Tag																																																																															
MST1R	4486	MSKCC	GRCh37	3	49932792	49932792	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	94	829	0	ENST00000296474.3:c.3079G>C	p.Asp1027His	p.D1027H	ENST00000296474	NM_002447.2	1027	Gat/Cat																																																																															
MET	4233	MSKCC	GRCh37	7	116412045	116412046	+	splice_donor_variant,intron_variant	Splice_Site	DNP	TA	TA	GG			P-0048096-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			806	34	595	0	ENST00000397752.3:c.3028+2_3028+3delinsGG		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
MYOD1	4654	MSKCC	GRCh37	11	17741678	17741678	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	56	593	0	ENST00000250003.3:c.349C>A	p.Arg117Ser	p.R117S	ENST00000250003	NM_002478.4	117	Cgc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578464	7578465	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0048150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	128	871	0	ENST00000269305.4:c.465_466del	p.Val157ProfsTer23	p.V157Pfs*23	ENST00000269305	NM_001126112.2	155	acCCgc/acgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860839	151860839	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs182795390		P-0048150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	20	493	0	ENST00000262189.6:c.9823A>G	p.Met3275Val	p.M3275V	ENST00000262189	NM_170606.2	3275	Atg/Gtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0050707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	89	277	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
TP63	8626	MSKCC	GRCh37	3	189586506	189586506	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs376910274		P-0050707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	64	316	0	ENST00000264731.3:c.1129+1G>A		p.X377_splice	ENST00000264731	NM_003722.4	377																																																																																
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0050707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	165	554	0	ENST00000269305.4:c.375+1G>C		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
IL7R	3575	MSKCC	GRCh37	5	35874622	35874622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	24	387	0	ENST00000303115.3:c.778G>T	p.Ala260Ser	p.A260S	ENST00000303115	NM_002185.3	260	Gcc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0051856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	17	555	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913343		P-0051856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	22	837	0	ENST00000269305.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000269305	NM_001126112.2	273	Cgt/Agt																																																																															
YAP1	10413	MSKCC	GRCh37	11	102056769	102056769	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	83	244	0	ENST00000282441.5:c.709G>C	p.Glu237Gln	p.E237Q	ENST00000282441	NM_001130145.2	237	Gaa/Caa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0052279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	433	443	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044534	47044537	+	frameshift_variant	Frame_Shift_Del	DEL	CTCC	CTCC	-			P-0052279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	120	607	0	ENST00000329236.7:c.1799_1802del	p.Ser600CysfsTer25	p.S600Cfs*25	ENST00000329236	NM_001204466.1	599	agCTCC/ag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650869	37650870	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	G			P-0052279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	95	507	0	ENST00000447079.4:c.2341_2342delinsG	p.Leu781GlufsTer9	p.L781Efs*9	ENST00000447079	NM_015083.1	781	TTa/Ga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	28	394	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	24	264	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			628	66	588	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			612	66	649	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177584	56177584	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368201444		P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			422	27	410	2	ENST00000399503.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000399503	NM_005921.1	853	Cgt/Tgt																																																																															
TET1	80312	MSKCC	GRCh37	10	70333863	70333863	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs750883311		P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	23	359	0	ENST00000373644.4:c.1768C>T	p.Arg590Ter	p.R590*	ENST00000373644	NM_030625.2	590	Cga/Tga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	30	313	0	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2491274	2491274	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368302066		P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			632	57	649	0	ENST00000355716.4:c.317G>A	p.Arg106His	p.R106H	ENST00000355716	NM_003820.2	106	cGc/cAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29585423	29585423	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			615	95	603	0	ENST00000358273.4:c.4235G>T	p.Arg1412Ile	p.R1412I	ENST00000358273	NM_001042492.2	1412	aGa/aTa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38279324	38279324	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774768179		P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			727	56	652	0	ENST00000425967.3:c.1165G>A	p.Val389Ile	p.V389I	ENST00000425967	NM_001174067.1	389	Gtt/Att																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094347	27094347	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	61	457	0	ENST00000324856.7:c.3055G>C	p.Glu1019Gln	p.E1019Q	ENST00000324856	NM_006015.4	1019	Gag/Cag																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281837	39281837	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374761537		P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			542	32	522	0	ENST00000402219.2:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000402219	NM_005633.3	213	cGa/cAa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499486	89499486	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373736475		P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			386	36	424	0	ENST00000336596.2:c.2656G>A	p.Gly886Ser	p.G886S	ENST00000336596	NM_005233.5	886	Ggc/Agc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151846107	151846107	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			505	49	457	0	ENST00000262189.6:c.12905del	p.Pro4302LeufsTer24	p.P4302Lfs*24	ENST00000262189	NM_170606.2	4302	cCt/ct																																																																															
MET	4233	MSKCC	GRCh37	7	116418998	116418998	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369838973		P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			226	30	229	1	ENST00000397752.3:c.3509G>A	p.Arg1170Gln	p.R1170Q	ENST00000397752	NM_000245.2	1170	cGa/cAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29533390	29533390	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			259	16	223	0	ENST00000358273.4:c.1392+1G>T		p.X464_splice	ENST00000358273	NM_001042492.2	464																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40790170	40790170	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373191879		P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	54	428	0	ENST00000373198.4:c.2561G>A	p.Arg854His	p.R854H	ENST00000373198	NM_133170.3	854	cGc/cAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012477	29012477	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			386	28	321	0	ENST00000282397.4:c.394G>T	p.Gly132Cys	p.G132C	ENST00000282397	NM_002019.4	132	Ggt/Tgt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156841460	156841460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			541	54	569	0	ENST00000524377.1:c.763A>C	p.Thr255Pro	p.T255P	ENST00000524377	NM_002529.3	255	Acc/Ccc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137219	64137219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			563	38	541	0	ENST00000334205.4:c.1651G>T	p.Asp551Tyr	p.D551Y	ENST00000334205	NM_003942.2	551	Gac/Tac																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942229	71942229	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			538	30	506	0	ENST00000298229.2:c.1493G>T	p.Arg498Leu	p.R498L	ENST00000298229	NM_001567.3	498	cGc/cTc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687442	37687442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			441	42	383	0	ENST00000447079.4:c.4346G>T	p.Gly1449Val	p.G1449V	ENST00000447079	NM_015083.1	1449	gGg/gTg																																																																															
RARA	5914	MSKCC	GRCh37	17	38510737	38510737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			428	31	383	1	ENST00000254066.5:c.991G>A	p.Ala331Thr	p.A331T	ENST00000254066	NM_000964.3	331	Gcc/Acc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59885829	59885829	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	27	364	0	ENST00000259008.2:c.917del	p.Asn306ThrfsTer32	p.N306Tfs*32	ENST00000259008	NM_032043.2	306	aAc/ac																																																																															
STK11	6794	MSKCC	GRCh37	19	1207133	1207133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			766	74	662	2	ENST00000326873.7:c.221G>A	p.Arg74Lys	p.R74K	ENST00000326873	NM_000455.4	74	aGg/aAg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288379	15288379	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			590	58	544	0	ENST00000263388.2:c.4360G>C	p.Asp1454His	p.D1454H	ENST00000263388	NM_000435.2	1454	Gac/Cac																																																																															
MLH1	4292	MSKCC	GRCh37	3	37061827	37061827	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs63750993		P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	60	477	0	ENST00000231790.2:c.911A>T	p.Asp304Val	p.D304V	ENST00000231790	NM_000249.3	304	gAt/gTt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55124978	55124978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			520	74	532	0	ENST00000257290.5:c.43C>T	p.Leu15Phe	p.L15F	ENST00000257290	NM_006206.4	15	Ctc/Ttc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294508	1294508	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			451	48	381	0	ENST00000310581.5:c.493A>T	p.Ser165Cys	p.S165C	ENST00000310581	NM_198253.2	165	Agc/Tgc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177474	56177474	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	30	382	0	ENST00000399503.3:c.2448del	p.Arg817GlufsTer5	p.R817Efs*5	ENST00000399503	NM_005921.1	816	tCc/tc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177476	56177476	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			400	30	375	0	ENST00000399503.3:c.2449A>T	p.Arg817Ter	p.R817*	ENST00000399503	NM_005921.1	817	Aga/Tga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170333	32170333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			720	63	728	0	ENST00000375023.3:c.3275G>T	p.Gly1092Val	p.G1092V	ENST00000375023	NM_004557.3	1092	gGc/gTc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38153392	38153392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			605	55	552	0	ENST00000317025.8:c.2837G>A	p.Cys946Tyr	p.C946Y	ENST00000317025	NM_023034.1	946	tGc/tAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356353	66356353	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	130	310	0	ENST00000273854.3:c.1144G>T	p.Asp382Tyr	p.D382Y	ENST00000273854	NM_004439.5	382	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0053772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	22	399	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0053772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	70	604	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591931	48591931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	14	369	1	ENST00000342988.3:c.1094G>A	p.Gly365Asp	p.G365D	ENST00000342988	NM_005359.5	365	gGt/gAt																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66519023	66519023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	43	458	0	ENST00000358598.2:c.304G>A	p.Ala102Thr	p.A102T	ENST00000358598	NM_212471.2	102	Gct/Act																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	105	602	7	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	109	678	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539564	187539564	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	80	570	0	ENST00000441802.2:c.8176C>T	p.Arg2726Ter	p.R2726*	ENST00000441802	NM_005245.3	2726	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	131	857	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	122	876	0	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116254	209116254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369048275		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	73	399	1	ENST00000345146.2:c.22G>A	p.Gly8Ser	p.G8S	ENST00000345146	NM_005896.2	8	Ggt/Agt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180367	32180367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1382129029		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	153	791	1	ENST00000375023.3:c.2564G>A	p.Arg855His	p.R855H	ENST00000375023	NM_004557.3	855	cGc/cAc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982356	25982356	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	72	372	1	ENST00000435504.4:c.934C>T	p.Arg312Ter	p.R312*	ENST00000435504		312	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894365		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	80	594	0	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214615	5214615	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754694289		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	156	876	1	ENST00000357368.4:c.4451C>T	p.Ser1484Leu	p.S1484L	ENST00000357368	NM_002850.3	1484	tCg/tTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023769	27023769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	66	464	1	ENST00000324856.7:c.879del	p.Thr294ProfsTer69	p.T294Pfs*69	ENST00000324856	NM_006015.4	292	aCc/ac																																																																															
CDH1	999	MSKCC	GRCh37	16	68856093	68856093	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121964878		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	134	747	1	ENST00000261769.5:c.1901C>T	p.Ala634Val	p.A634V	ENST00000261769	NM_004360.3	634	gCg/gTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	136	936	5	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38283643	38283643	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs186746130		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	118	575	0	ENST00000425967.3:c.835G>A	p.Val279Met	p.V279M	ENST00000425967	NM_001174067.1	279	Gtg/Atg																																																																															
ATRX	546	MSKCC	GRCh37	X	76938407	76938407	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	124	425	1	ENST00000373344.5:c.2341C>T	p.Arg781Ter	p.R781*	ENST00000373344	NM_000489.3	781	Cga/Tga																																																																															
BCL6	604	MSKCC	GRCh37	3	187446324	187446324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs541016998		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	136	692	0	ENST00000232014.4:c.1364C>T	p.Thr455Met	p.T455M	ENST00000232014	NM_001130845.1	455	aCg/aTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873066	134873066	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762457030		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	138	821	0	ENST00000398015.3:c.1370C>T	p.Pro457Leu	p.P457L	ENST00000398015	NM_004441.4	457	cCg/cTg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202585	67202585	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374915842		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	134	878	0	ENST00000312629.5:c.1394G>A	p.Arg465His	p.R465H	ENST00000312629	NM_003952.2	465	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540654		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	146	902	2	ENST00000269305.4:c.329G>A	p.Arg110His	p.R110H	ENST00000269305	NM_001126112.2	110	cGt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249029	55249029	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs483352806		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	119	753	0	ENST00000275493.2:c.2327G>A	p.Arg776His	p.R776H	ENST00000275493	NM_005228.3	776	cGc/cAc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193218979	193218979	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060500011		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	79	446	1	ENST00000367435.3:c.1537C>T	p.Arg513Trp	p.R513W	ENST00000367435	NM_024529.4	513	Cgg/Tgg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149457719	149457719	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149911279		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	158	910	0	ENST00000286301.3:c.685G>A	p.Val229Ile	p.V229I	ENST00000286301	NM_005211.3	229	Gtt/Att																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	151	984	6	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																															
JAK3	3718	MSKCC	GRCh37	19	17954248	17954248	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776850935		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	153	805	0	ENST00000458235.1:c.361C>T	p.Arg121Cys	p.R121C	ENST00000458235	NM_000215.3	121	Cgc/Tgc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514694	103514694	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs4150315		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	101	569	0	ENST00000355739.4:c.1195G>A	p.Glu399Lys	p.E399K	ENST00000355739	NM_000123.3	399	Gaa/Aaa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212575	36212575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769208559		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	169	1045	0	ENST00000222270.7:c.2326C>T	p.Arg776Trp	p.R776W	ENST00000222270	NM_014727.1	776	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444987	49444987	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	130	724	0	ENST00000301067.7:c.2479del	p.Gln827AsnfsTer103	p.Q827Nfs*103	ENST00000301067	NM_003482.3	827	Caa/aa																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858188	27858188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	121	586	0	ENST00000359303.2:c.383C>T	p.Ala128Val	p.A128V	ENST00000359303	NM_003535.2	128	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420493	49420493	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs727503979		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	144	881	2	ENST00000301067.7:c.15256C>T	p.Arg5086Ter	p.R5086*	ENST00000301067	NM_003482.3	5086	Cga/Tga																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195544	102195544	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs922637067		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	111	664	0	ENST00000263464.3:c.304G>A	p.Val102Ile	p.V102I	ENST00000263464	NM_001165.4	102	Gtt/Att																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098425	11098425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	27	469	0	ENST00000344626.4:c.947del	p.Pro316LeufsTer10	p.P316Lfs*10	ENST00000344626	NM_003072.3	315	Ccc/cc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469969	25469969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1191462913		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	47	831	0	ENST00000264709.3:c.1073C>T	p.Thr358Met	p.T358M	ENST00000264709	NM_175629.2	358	aCg/aTg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131915589	131915589	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764784659		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	59	395	0	ENST00000265335.6:c.587G>A	p.Arg196His	p.R196H	ENST00000265335		196	cGt/cAt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435697	110435697	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745496477		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	74	427	2	ENST00000375856.3:c.2704C>T	p.Pro902Ser	p.P902S	ENST00000375856	NM_003749.2	902	Ccc/Tcc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472553	88472553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	59	806	0	ENST00000360948.2:c.2002G>A	p.Val668Met	p.V668M	ENST00000360948	NM_001012338.2	668	Gtg/Atg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271704	38271704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	166	1128	1	ENST00000425967.3:c.2245C>T	p.Arg749Cys	p.R749C	ENST00000425967	NM_001174067.1	749	Cgc/Tgc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844416	156844416	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	170	1097	0	ENST00000524377.1:c.1251+1del		p.G417fs	ENST00000524377	NM_002529.3	417	Ggg/gg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163298658	163298658	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755645930		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	126	768	3	ENST00000271452.3:c.298C>T	p.Arg100Trp	p.R100W	ENST00000271452	NM_145697.2	100	Cgg/Tgg																																																																															
WT1	7490	MSKCC	GRCh37	11	32410677	32410677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	102	623	4	ENST00000332351.3:c.1481C>T	p.Ala494Val	p.A494V	ENST00000332351	NM_024426.4	494	gCc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446006	49446006	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778182231		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	186	1046	1	ENST00000301067.7:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000301067	NM_003482.3	487	cGg/cAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781928	3781928	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	100	563	0	ENST00000262367.5:c.4739del	p.Gly1580AlafsTer55	p.G1580Afs*55	ENST00000262367	NM_004380.2	1580	gGc/gc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011227	12011227	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	80	496	0	ENST00000353533.5:c.633+1G>C		p.X211_splice	ENST00000353533	NM_003010.3	211																																																																																
STAT5B	6777	MSKCC	GRCh37	17	40368045	40368045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	156	808	0	ENST00000293328.3:c.1460C>T	p.Ala487Val	p.A487V	ENST00000293328	NM_012448.3	487	gCt/gTt																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40451807	40451807	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1231666878		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	117	815	0	ENST00000345506.4:c.589C>T	p.Arg197Cys	p.R197C	ENST00000345506	NM_003152.3	197	Cgt/Tgt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58677960	58677961	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	37	302	0	ENST00000305921.3:c.185_186del	p.Glu62GlyfsTer27	p.E62Gfs*27	ENST00000305921	NM_003620.3	62	gAA/g																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59858254	59858254	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs780020495		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	122	681	0	ENST00000259008.2:c.1741C>T	p.Arg581Ter	p.R581*	ENST00000259008	NM_032043.2	581	Cga/Tga																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967722	18967722	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	51	850	0	ENST00000262803.5:c.1861G>T	p.Gly621Cys	p.G621C	ENST00000262803	NM_002911.3	621	Ggt/Tgt																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855786	45855786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	133	824	0	ENST00000391945.4:c.2024G>A	p.Gly675Asp	p.G675D	ENST00000391945	NM_000400.3	675	gGc/gAc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637260	47637260	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	103	756	0	ENST00000233146.2:c.394G>T	p.Glu132Ter	p.E132*	ENST00000233146	NM_000251.2	132	Gaa/Taa																																																																															
CRKL	1399	MSKCC	GRCh37	22	21304023	21304023	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	125	640	0	ENST00000354336.3:c.802A>G	p.Arg268Gly	p.R268G	ENST00000354336	NM_005207.3	268	Agg/Ggg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539446	187539447	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	109	589	0	ENST00000441802.2:c.8293_8294del	p.Leu2766Ter	p.L2766*	ENST00000441802	NM_005245.3	2765	AGt/t																																																																															
RASA1	5921	MSKCC	GRCh37	5	86628364	86628364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	62	546	0	ENST00000274376.6:c.733C>T	p.Arg245Cys	p.R245C	ENST00000274376	NM_002890.2	245	Cgt/Tgt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968316	2968316	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1012368675		P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	133	841	2	ENST00000396946.4:c.1670G>A	p.Arg557His	p.R557H	ENST00000396946	NM_032415.4	557	cGc/cAc																																																																															
TEK	7010	MSKCC	GRCh37	9	27203043	27203043	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	128	815	0	ENST00000380036.4:c.2139del	p.Phe713LeufsTer6	p.F713Lfs*6	ENST00000380036	NM_000459.3	712	aTt/at																																																																															
RB1	5925	MSKCC	GRCh37	13	48954220	48954237	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTAAATTTTTTACTTTT	GGTAAATTTTTTACTTTT	AAA			P-0054242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	101	282	1	ENST00000267163.4:c.1421_1421+17delinsAAA		p.X474_splice	ENST00000267163	NM_000321.2	474																																																																																
TP53	7157	MSKCC	GRCh37	17	7579359	7579359	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587780066		P-0054242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	373	1224	1	ENST00000269305.4:c.328del	p.Arg110ValfsTer13	p.R110Vfs*13	ENST00000269305	NM_001126112.2	110	Cgt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579509	7579509	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	319	1151	0	ENST00000269305.4:c.178C>G	p.Pro60Ala	p.P60A	ENST00000269305	NM_001126112.2	60	Cca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7579586	7579586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	270	954	0	ENST00000269305.4:c.101C>T	p.Pro34Leu	p.P34L	ENST00000269305	NM_001126112.2	34	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579702	7579702	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0054242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	197	825	1	ENST00000269305.4:c.94C>A	p.Leu32Met	p.L32M	ENST00000269305	NM_001126112.2	32	Ctg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0054242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	404	539	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573118	64573118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs772588551		P-0054414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	284	467	0	ENST00000337652.1:c.1189G>T	p.Glu397Ter	p.E397*	ENST00000337652	NM_130803.2	397	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0054426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	249	719	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0054426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	186	417	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0054426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	187	557	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912186	114912186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	223	624	0	ENST00000543371.1:c.1256C>T	p.Ala419Val	p.A419V	ENST00000543371	NM_001198531.1	419	gCg/gTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265989	41266510	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACAT	TAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACAT	-			P-0054426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	104	203	0	ENST00000349496.5:c.14-26_309del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41277955	41277955	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	120	427	1	ENST00000349496.5:c.1919T>C	p.Leu640Pro	p.L640P	ENST00000349496	NM_001904.3	640	cTg/cCg																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84406221	84406221	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1027841598		P-0054426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	106	450	0	ENST00000321945.7:c.5A>C	p.Glu2Ala	p.E2A	ENST00000321945	NM_139076.2	2	gAg/gCg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251883	153251883	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0054426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	125	401	0	ENST00000281708.4:c.1122+1G>T		p.X374_splice	ENST00000281708	NM_033632.3	374																																																																																
PRDM14	63978	MSKCC	GRCh37	8	70980563	70980563	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	57	673	0	ENST00000276594.2:c.814A>C	p.Ser272Arg	p.S272R	ENST00000276594	NM_024504.3	272	Agt/Cgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	108	363	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28602354	28602354	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1367367961		P-0054675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	287	495	1	ENST00000241453.7:c.2014G>A	p.Glu672Lys	p.E672K	ENST00000241453	NM_004119.2	672	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112174349	112174349	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	137	238	0	ENST00000257430.4:c.3058G>T	p.Glu1020Ter	p.E1020*	ENST00000257430	NM_000038.5	1020	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577157	7577157	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0054675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	181	474	0	ENST00000269305.4:c.783-2A>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114710635	114710635	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	114	459	0	ENST00000543371.1:c.122del	p.Leu41Ter	p.L41*	ENST00000543371	NM_001198531.1	40	gaT/ga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096022	11096022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745406632		P-0054675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	267	801	0	ENST00000344626.4:c.296G>A	p.Arg99Gln	p.R99Q	ENST00000344626	NM_003072.3	99	cGg/cAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266693	41266693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	69	402	0	ENST00000349496.5:c.490G>A	p.Asp164Asn	p.D164N	ENST00000349496	NM_001904.3	164	Gac/Aac																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057690	180057690	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767952525		P-0054675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	460	833	1	ENST00000261937.6:c.265G>A	p.Ala89Thr	p.A89T	ENST00000261937	NM_182925.4	89	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0054907-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			722	189	846	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0054907-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			307	44	452	0	ENST00000256078.4:c.34_35delinsCT	p.Gly12Leu	p.G12L	ENST00000256078	NM_033360.2	12	GGt/CTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0055027-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			205	69	325	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0055027-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			232	112	597	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591890	48591907	+	inframe_deletion	In_Frame_Del	DEL	TGGATACGTGGACCCTTC	TGGATACGTGGACCCTTC	-			P-0055027-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			167	88	423	0	ENST00000342988.3:c.1057_1074del	p.Tyr353_Gly358del	p.Y353_G358del	ENST00000342988	NM_005359.5	351	gaTGGATACGTGGACCCTTCt/gat																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880219	37880220	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC	rs121913469		P-0055318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	159	646	0	ENST00000269571.5:c.2263_2264delinsCC	p.Leu755Pro	p.L755P	ENST00000269571		755	TTg/CCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0055609-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			87	18	374	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021824	71021824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055609-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			85	16	212	0	ENST00000318789.4:c.1534G>A	p.Ala512Thr	p.A512T	ENST00000318789	NM_032682.5	512	Gca/Aca																																																																															
TCF3	6929	MSKCC	GRCh37	19	1632099	1632099	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055609-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			132	19	945	0	ENST00000344749.5:c.236C>G	p.Thr79Ser	p.T79S	ENST00000344749	NM_001136139.2	79	aCc/aGc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971183	13971183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055609-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			120	15	481	0	ENST00000405192.2:c.746G>A	p.Ser249Asn	p.S249N	ENST00000405192	NM_001163147.1	249	aGc/aAc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367353	50367353	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0055609-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			111	21	545	0	ENST00000331340.3:c.160G>C	p.Ala54Pro	p.A54P	ENST00000331340	NM_006060.4	54	Gcc/Ccc																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858185	152858185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055609-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			68	26	511	0	ENST00000406277.2:c.430C>T	p.Leu144Phe	p.L144F	ENST00000406277	NM_152274.4	144	Ctc/Ttc																																																																															
CD276	80381	MSKCC	GRCh37	15	73995358	73995359	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0055609-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			84	24	564	0	ENST00000318443.5:c.665dup	p.Arg223AlafsTer31	p.R223Afs*31	ENST00000318443	NM_001024736.1	222	gtg/gTtg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	71	417	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	77	402	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52584583	52584583	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	191	886	2	ENST00000394830.3:c.4430del	p.Pro1477LeufsTer12	p.P1477Lfs*12	ENST00000394830	NM_018313.4	1477	cCt/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786202962		P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1292	130	979	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	43	235	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	144	674	4	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	159	664	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	98	375	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	41	204	0	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637699	52637700	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	87	419	0	ENST00000394830.3:c.2616dup	p.Ile873TyrfsTer2	p.I873Yfs*2	ENST00000394830	NM_018313.4	872	-/T																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088788	27088788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	167	784	1	ENST00000324856.7:c.2402del	p.Gly801ValfsTer32	p.G801Vfs*32	ENST00000324856	NM_006015.4	799	caG/ca																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72861878	72861878	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201983708		P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	103	623	0	ENST00000325599.8:c.1004G>A	p.Arg335His	p.R335H	ENST00000325599	NM_018130.2	335	cGc/cAc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163553	32163554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs777647776		P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	167	760	6	ENST00000375023.3:c.5672dup	p.Gly1892ArgfsTer24	p.G1892Rfs*24	ENST00000375023	NM_004557.3	1891	ggc/ggGc																																																																															
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	162	786	0	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412005	63412013	+	inframe_deletion	In_Frame_Del	DEL	CCTCTTCTT	CCTCTTCTT	-	rs587778022		P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	109	935	0	ENST00000330258.3:c.1154_1162del	p.Glu385_Glu387del	p.E385_E387del	ENST00000330258	NM_152424.3	385	gAAGAAGAGGtg/gtg																																																																															
B2M	567	MSKCC	GRCh37	15	45007689	45007690	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	99	387	0	ENST00000558401.1:c.137_138del	p.Tyr46CysfsTer10	p.Y46Cfs*10	ENST00000558401	NM_004048.2	46	TAt/t																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202732	128202732	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1127	223	1131	0	ENST00000341105.2:c.988C>T	p.Arg330Ter	p.R330*	ENST00000341105	NM_032638.4	330	Cga/Tga																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029072	14029072	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763619616		P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	54	267	1	ENST00000311895.7:c.1283C>T	p.Ala428Val	p.A428V	ENST00000311895	NM_005236.2	428	gCg/gTg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020754	37020754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	125	701	1	ENST00000358127.4:c.91C>T	p.Arg31Trp	p.R31W	ENST00000358127	NM_001280556.1	31	Cgg/Tgg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	113	638	9	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1447	261	1191	0	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458270	12458270	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	108	636	2	ENST00000287820.6:c.892del	p.Leu298CysfsTer38	p.L298Cfs*38	ENST00000287820	NM_015869.4	296	aCc/ac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630604	187630605	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	143	668	1	ENST00000441802.2:c.377dup	p.Asn126LysfsTer3	p.N126Kfs*3	ENST00000441802	NM_005245.3	126	aat/aaAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434959	49434959	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	193	1067	3	ENST00000301067.7:c.6594del	p.Tyr2199IlefsTer65	p.Y2199Ifs*65	ENST00000301067	NM_003482.3	2198	ccC/cc																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2636722	2636724	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	139	760	2	ENST00000342085.4:c.1179_1181del	p.Ser394del	p.S394del	ENST00000342085	NM_002613.4	391	TCC/-																																																																															
EP300	2033	MSKCC	GRCh37	22	41525977	41525977	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	97	478	1	ENST00000263253.7:c.1256del	p.Asn419MetfsTer12	p.N419Mfs*12	ENST00000263253	NM_001429.3	418	Aaa/aa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619323	1619323	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761667569		P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1225	151	1033	1	ENST00000344749.5:c.1318G>A	p.Ala440Thr	p.A440T	ENST00000344749	NM_001136139.2	440	Gca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438210	49438211	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1179	204	885	1	ENST00000301067.7:c.5058dup	p.Arg1687ThrfsTer4	p.R1687Tfs*4	ENST00000301067	NM_003482.3	1686	-/A																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49415845	49415845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	126	557	0	ENST00000301067.7:c.16502G>A	p.Arg5501Gln	p.R5501Q	ENST00000301067	NM_003482.3	5501	cGa/cAa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16242716	16242716	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	128	564	0	ENST00000375759.3:c.1342del	p.Thr448ProfsTer25	p.T448Pfs*25	ENST00000375759	NM_015001.2	446	gAa/ga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262655	16262655	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375642545		P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	129	659	0	ENST00000375759.3:c.9920G>A	p.Arg3307Gln	p.R3307Q	ENST00000375759	NM_015001.2	3307	cGg/cAg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28595718	28595718	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	212	982	4	ENST00000253063.3:c.115C>T	p.Arg39Ter	p.R39*	ENST00000253063	NM_031459.4	39	Cga/Tga																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66779584	66779584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	100	464	0	ENST00000307102.5:c.914G>A	p.Arg305Gln	p.R305Q	ENST00000307102	NM_002755.3	305	cGa/cAa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223811	2223811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1314	235	1173	6	ENST00000326181.6:c.1109C>T	p.Ala370Val	p.A370V	ENST00000326181	NM_032271.2	370	gCg/gTg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14024572	14024572	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs746106147		P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	53	331	0	ENST00000311895.7:c.798C>G	p.Ile266Met	p.I266M	ENST00000311895	NM_005236.2	266	atC/atG																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821998	72821998	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	124	581	1	ENST00000268489.5:c.10177C>T	p.Gln3393Ter	p.Q3393*	ENST00000268489	NM_006885.3	3393	Cag/Tag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16042406	16042406	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	100	612	0	ENST00000268712.3:c.1268T>G	p.Leu423Arg	p.L423R	ENST00000268712	NM_006311.3	423	cTt/cGt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229600	5229600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	41	127	0	ENST00000357368.4:c.2251G>A	p.Gly751Ser	p.G751S	ENST00000357368	NM_002850.3	751	Ggc/Agc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349792	15349792	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1186	237	1143	2	ENST00000263377.2:c.3783-1G>T		p.X1261_splice	ENST00000263377	NM_058243.2	1261																																																																																
IRS1	3667	MSKCC	GRCh37	2	227660300	227660300	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	201	792	2	ENST00000305123.5:c.3155A>C	p.Glu1052Ala	p.E1052A	ENST00000305123	NM_005544.2	1052	gAg/gCg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662260	227662260	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1205	265	1046	0	ENST00000305123.5:c.1195G>T	p.Gly399Cys	p.G399C	ENST00000305123	NM_005544.2	399	Ggc/Tgc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023246	31023246	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371903529		P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	135	748	1	ENST00000375687.4:c.2731C>T	p.Pro911Ser	p.P911S	ENST00000375687	NM_015338.5	911	Ccc/Tcc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39741453	39741453	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	88	406	0	ENST00000361337.2:c.1340C>A	p.Ala447Asp	p.A447D	ENST00000361337	NM_003286.2	447	gCt/gAt																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169988255	169988255	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1030581930		P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	112	419	0	ENST00000295797.4:c.497G>A	p.Arg166His	p.R166H	ENST00000295797	NM_002740.5	166	cGc/cAc																																																																															
KIT	3815	MSKCC	GRCh37	4	55564702	55564702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	73	573	0	ENST00000288135.5:c.590C>T	p.Ser197Leu	p.S197L	ENST00000288135	NM_000222.2	197	tCg/tTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176720852	176720852	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	120	514	1	ENST00000439151.2:c.6483G>T	p.Trp2161Cys	p.W2161C	ENST00000439151	NM_022455.4	2161	tgG/tgT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180050990	180050990	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs762704129		P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1289	216	1134	1	ENST00000261937.6:c.1493T>C	p.Val498Ala	p.V498A	ENST00000261937	NM_182925.4	498	gTg/gCg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798054	32798054	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	223	1024	0	ENST00000374899.4:c.1625T>C	p.Leu542Pro	p.L542P	ENST00000374899	NM_018833.2	542	cTg/cCg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946403	2946403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1409	218	1181	0	ENST00000396946.4:c.3334G>A	p.Ala1112Thr	p.A1112T	ENST00000396946	NM_032415.4	1112	Gcc/Acc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148523672	148523672	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	58	333	1	ENST00000320356.2:c.781A>T	p.Thr261Ser	p.T261S	ENST00000320356	NM_004456.4	261	Acc/Tcc																																																																															
ATM	472	MSKCC	GRCh37	11	108159822	108159822	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0055780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	13	118	0	ENST00000278616.4:c.4231del	p.Ser1411AlafsTer40	p.S1411Afs*40	ENST00000278616	NM_000051.3	1410	Aaa/aa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678559	88678559	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764882745		P-0055821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	200	628	0	ENST00000360948.2:c.977G>A	p.Arg326His	p.R326H	ENST00000360948	NM_001012338.2	326	cGt/cAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829164	72829164	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0055821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	359	976	1	ENST00000268489.5:c.7417C>T	p.Gln2473Ter	p.Q2473*	ENST00000268489	NM_006885.3	2473	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0055828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	80	888	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0055828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	19	505	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593405	48593405	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519962		P-0055828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	11	422	0	ENST00000342988.3:c.1156G>A	p.Gly386Ser	p.G386S	ENST00000342988	NM_005359.5	386	Ggt/Agt																																																																															
MGA	23269	MSKCC	GRCh37	15	42028702	42028702	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0055828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	43	698	0	ENST00000219905.7:c.4240T>G	p.Ser1414Ala	p.S1414A	ENST00000219905	NM_001164273.1	1414	Tca/Gca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0056532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	148	413	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0056532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	444	739	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0056532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	126	383	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593492	48593492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	151	353	0	ENST00000342988.3:c.1243G>A	p.Asp415Asn	p.D415N	ENST00000342988	NM_005359.5	415	Gac/Aac																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72163770	72163770	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	59	515	0	ENST00000357731.5:c.588C>A	p.Asp196Glu	p.D196E	ENST00000357731	NM_173808.2	196	gaC/gaA																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138619	11138619	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	172	587	0	ENST00000344626.4:c.3375G>T	p.Arg1125Ser	p.R1125S	ENST00000344626	NM_003072.3	1125	agG/agT																																																																															
CIC	23152	MSKCC	GRCh37	19	42798447	42798447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	241	773	0	ENST00000575354.2:c.4318G>T	p.Asp1440Tyr	p.D1440Y	ENST00000575354	NM_015125.3	1440	Gac/Tac																																																																															
SOS1	6654	MSKCC	GRCh37	2	39285931	39285931	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0056532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	215	402	0	ENST00000402219.2:c.228A>C	p.Lys76Asn	p.K76N	ENST00000402219	NM_005633.3	76	aaA/aaC																																																																															
XPO1	7514	MSKCC	GRCh37	2	61721070	61721070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	138	480	1	ENST00000401558.2:c.1204G>A	p.Val402Ile	p.V402I	ENST00000401558	NM_003400.3	402	Gtt/Att																																																																															
KDR	3791	MSKCC	GRCh37	4	55955116	55955116	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	100	435	0	ENST00000263923.4:c.3429G>C	p.Trp1143Cys	p.W1143C	ENST00000263923	NM_002253.2	1143	tgG/tgC																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645121	86645121	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs137853214		P-0056532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	77	323	0	ENST00000274376.6:c.1193G>T	p.Arg398Leu	p.R398L	ENST00000274376	NM_002890.2	398	cGa/cTa																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175364	+	frameshift_variant	Frame_Shift_Del	DEL	GAATTTTCTTCAGGAGC	GAATTTTCTTCAGGAGC	-			P-0056532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	77	260	0	ENST00000257430.4:c.4060_4076del	p.Phe1354IlefsTer15	p.F1354Ifs*15	ENST00000257430	NM_000038.5	1353	GAATTTTCTTCAGGAGCg/g																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176516643	176516643	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768529489		P-0056532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	217	786	0	ENST00000292408.4:c.40G>A	p.Val14Met	p.V14M	ENST00000292408	NM_213647.1	14	Gtg/Atg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117663648	117663648	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	43	473	0	ENST00000368508.3:c.4584A>G	p.Ile1528Met	p.I1528M	ENST00000368508	NM_002944.2	1528	atA/atG																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87482294	87482294	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0056532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	112	544	0	ENST00000277120.3:c.1581T>G	p.Ile527Met	p.I527M	ENST00000277120		527	atT/atG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0056559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	169	253	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0056559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	189	851	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061162	38061188	+	inframe_deletion	In_Frame_Del	DEL	CCGCCGGCCCCCGGCTGCTTCTCGCAC	CCGCCGGCCCCCGGCTGCTTCTCGCAC	-			P-0056559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	375	297	0	ENST00000250448.2:c.801_827del	p.Lys267_Gly276delinsAsn	p.K267_G276delinsN	ENST00000250448	NM_004496.3	267	aaGTGCGAGAAGCAGCCGGGGGCCGGCGGc/aac																																																																															
DICER1	23405	MSKCC	GRCh37	14	95572454	95572454	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0056559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	190	351	0	ENST00000343455.3:c.2911T>A	p.Tyr971Asn	p.Y971N	ENST00000343455	NM_177438.2	971	Tat/Aat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168495	56168495	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	136	131	0	ENST00000399503.3:c.1452del	p.Glu484AspfsTer3	p.E484Dfs*3	ENST00000399503	NM_005921.1	484	gAa/ga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177777	56177784	+	frameshift_variant	Frame_Shift_Del	DEL	CTACAAAA	CTACAAAA	-			P-0056559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	183	414	0	ENST00000399503.3:c.2750_2757del	p.Ala917ValfsTer10	p.A917Vfs*10	ENST00000399503	NM_005921.1	917	gCTACAAAA/g																																																																															
RAD21	5885	MSKCC	GRCh37	8	117874089	117874089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	145	206	0	ENST00000297338.2:c.365C>T	p.Pro122Leu	p.P122L	ENST00000297338	NM_006265.2	122	cCt/cTt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754894	57754932	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCTCGTAACATTTTGCAAAGCCACCCTGAAAGGAAACA	ATCTCGTAACATTTTGCAAAGCCACCCTGAAAGGAAACA	-			P-0056559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	101	362	0	ENST00000274289.3:c.271-13_296del		p.X91_splice	ENST00000274289	NM_006622.3	91																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0056927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	80	331	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0056927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	132	338	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0056927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	72	457	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934874		P-0056927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	39	898	1	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																															
MYC	4609	MSKCC	GRCh37	8	128750639	128750639	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775522201		P-0056927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	205	790	0	ENST00000377970.2:c.176C>T	p.Ala59Val	p.A59V	ENST00000377970	NM_002467.4	59	gCg/gTg																																																																															
ATM	472	MSKCC	GRCh37	11	108115727	108115727	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747727055		P-0056927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	43	237	0	ENST00000278616.4:c.875C>T	p.Pro292Leu	p.P292L	ENST00000278616	NM_000051.3	292	cCg/cTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0056927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	161	482	1	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119808	70119808	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	111	671	0	ENST00000245479.2:c.811del	p.Arg271AlafsTer8	p.R271Afs*8	ENST00000245479	NM_000346.3	270	ttC/tt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217148	66217148	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747385140		P-0056927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	82	536	0	ENST00000273854.3:c.2467C>T	p.Arg823Trp	p.R823W	ENST00000273854	NM_004439.5	823	Cgg/Tgg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134575	2134575	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	122	965	1	ENST00000219476.3:c.4352G>T	p.Arg1451Leu	p.R1451L	ENST00000219476	NM_000548.3	1451	cGc/cTc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118911	70118919	+	inframe_deletion	In_Frame_Del	DEL	GCGCGTGCA	GCGCGTGCA	-			P-0057523-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			903	95	837	0	ENST00000245479.2:c.485_493del	p.Arg162_Gln164del	p.R162_Q164del	ENST00000245479	NM_000346.3	161	ctGCGCGTGCAg/ctg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782066	9782066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	406	921	1	ENST00000377346.4:c.2089G>T	p.Asp697Tyr	p.D697Y	ENST00000377346	NM_005026.3	697	Gac/Tac																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9783338	9783338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	307	622	0	ENST00000377346.4:c.2582C>T	p.Ser861Phe	p.S861F	ENST00000377346	NM_005026.3	861	tCc/tTc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784424	9784424	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145589432		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	288	521	0	ENST00000377346.4:c.2809G>A	p.Asp937Asn	p.D937N	ENST00000377346	NM_005026.3	937	Gac/Aac																																																																															
MTOR	2475	MSKCC	GRCh37	1	11313970	11313970	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	383	728	0	ENST00000361445.4:c.766A>C	p.Asn256His	p.N256H	ENST00000361445	NM_004958.3	256	Aat/Cat																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797144	45797144	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	417	1080	0	ENST00000372115.3:c.1229T>G	p.Leu410Arg	p.L410R	ENST00000372115	NM_001048171.1	410	cTa/cGa																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739117	46739117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	291	629	0	ENST00000371975.4:c.1466C>T	p.Ala489Val	p.A489V	ENST00000371975	NM_003579.3	489	gCc/gTc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306939	65306939	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	132	412	0	ENST00000342505.4:c.2638G>T	p.Asp880Tyr	p.D880Y	ENST00000342505	NM_002227.2	880	Gac/Tac																																																																															
NEGR1	257194	MSKCC	GRCh37	1	71873198	71873198	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	162	342	0	ENST00000357731.5:c.996C>A	p.Cys332Ter	p.C332*	ENST00000357731	NM_173808.2	332	tgC/tgA																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400981	72400981	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	129	219	1	ENST00000357731.5:c.190G>T	p.Asp64Tyr	p.D64Y	ENST00000357731	NM_173808.2	64	Gat/Tat																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115262259	115262259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	186	319	0	ENST00000438362.2:c.2295C>A	p.Phe765Leu	p.F765L	ENST00000438362	NM_001242891.1	765	ttC/ttA																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115275368	115275368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	287	502	0	ENST00000438362.2:c.1045G>A	p.Asp349Asn	p.D349N	ENST00000438362	NM_001242891.1	349	Gat/Aat																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699483	117699483	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	192	356	0	ENST00000369458.3:c.158T>G	p.Ile53Ser	p.I53S	ENST00000369458	NM_024626.3	53	aTc/aGc																																																																															
SDHC	6391	MSKCC	GRCh37	1	161298214	161298214	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	204	411	0	ENST00000367975.2:c.106G>T	p.Glu36Ter	p.E36*	ENST00000367975	NM_003001.3	36	Gaa/Taa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729635	162729635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	316	543	1	ENST00000367921.3:c.721G>A	p.Asp241Asn	p.D241N	ENST00000367921	NM_006182.2	241	Gat/Aat																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746003	162746003	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs896311138		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	141	289	0	ENST00000367921.3:c.2126G>A	p.Arg709Gln	p.R709Q	ENST00000367921	NM_006182.2	709	cGa/cAa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193218892	193218892	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1225502334		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	79	186	0	ENST00000367435.3:c.1450C>T	p.Arg484Cys	p.R484C	ENST00000367435	NM_024529.4	484	Cgt/Tgt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983105	201983105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	399	609	0	ENST00000359651.3:c.954G>T	p.Lys318Asn	p.K318N	ENST00000359651		318	aaG/aaT																																																																															
MDM4	4194	MSKCC	GRCh37	1	204501343	204501343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	136	280	0	ENST00000367182.3:c.312G>T	p.Lys104Asn	p.K104N	ENST00000367182	NM_001278516.1	104	aaG/aaT																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206646597	206646597	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	471	1075	1	ENST00000367120.3:c.27G>A	p.Trp9Ter	p.W9*	ENST00000367120	NM_014002.3	9	tgG/tgA																																																																															
IL10	3586	MSKCC	GRCh37	1	206943189	206943189	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	196	346	0	ENST00000423557.1:c.429G>T	p.Lys143Asn	p.K143N	ENST00000423557	NM_000572.2	143	aaG/aaT																																																																															
PARP1	142	MSKCC	GRCh37	1	226590079	226590079	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs768342881		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	239	454	0	ENST00000366794.5:c.122C>T	p.Ser41Leu	p.S41L	ENST00000366794	NM_001618.3	41	tCg/tTg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828185	243828185	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	167	253	0	ENST00000263826.5:c.173A>C	p.Lys58Thr	p.K58T	ENST00000263826	NM_005465.4	58	aAa/aCa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63662098	63662098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	199	385	1	ENST00000279873.7:c.202C>A	p.Gln68Lys	p.Q68K	ENST00000279873	NM_032199.2	68	Caa/Aaa																																																																															
TET1	80312	MSKCC	GRCh37	10	70332102	70332102	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs750698861		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	76	113	0	ENST00000373644.4:c.7C>T	p.Arg3Ter	p.R3*	ENST00000373644	NM_030625.2	3	Cga/Tga																																																																															
TET1	80312	MSKCC	GRCh37	10	70332949	70332949	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	294	566	0	ENST00000373644.4:c.854C>A	p.Ser285Tyr	p.S285Y	ENST00000373644	NM_030625.2	285	tCt/tAt																																																																															
TET1	80312	MSKCC	GRCh37	10	70432771	70432771	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	190	360	0	ENST00000373644.4:c.4793G>T	p.Arg1598Ile	p.R1598I	ENST00000373644	NM_030625.2	1598	aGa/aTa																																																																															
TET1	80312	MSKCC	GRCh37	10	70446128	70446128	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1349186385		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	196	358	0	ENST00000373644.4:c.5068C>T	p.Arg1690Ter	p.R1690*	ENST00000373644	NM_030625.2	1690	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	219	405	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
SUFU	51684	MSKCC	GRCh37	10	104309845	104309845	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1060501109		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	212	359	1	ENST00000369902.3:c.436C>T	p.Arg146Ter	p.R146*	ENST00000369902	NM_016169.3	146	Cga/Tga																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724144	112724144	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	121	221	0	ENST00000369452.4:c.28G>T	p.Asp10Tyr	p.D10Y	ENST00000369452	NM_007373.3	10	Gac/Tac																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724495	112724495	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	214	416	0	ENST00000369452.4:c.379G>T	p.Glu127Ter	p.E127*	ENST00000369452	NM_007373.3	127	Gaa/Taa																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112769520	112769520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	234	476	0	ENST00000369452.4:c.1472G>A	p.Gly491Asp	p.G491D	ENST00000369452	NM_007373.3	491	gGt/gAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911535	114911535	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	143	272	0	ENST00000543371.1:c.1053G>T	p.Lys351Asn	p.K351N	ENST00000543371	NM_001198531.1	351	aaG/aaT																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14300963	14300963	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	277	469	0	ENST00000256196.4:c.535C>A	p.Gln179Lys	p.Q179K	ENST00000256196		179	Caa/Aaa																																																																															
WT1	7490	MSKCC	GRCh37	11	32410684	32410684	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	248	509	0	ENST00000332351.3:c.1474A>G	p.Lys492Glu	p.K492E	ENST00000332351	NM_024426.4	492	Aag/Gag																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200270	67200270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201348433		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	373	780	0	ENST00000312629.5:c.578G>A	p.Arg193Gln	p.R193Q	ENST00000312629	NM_003952.2	193	cGg/cAg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944516	71944516	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1293622519		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	334	778	0	ENST00000298229.2:c.2072G>A	p.Arg691Gln	p.R691Q	ENST00000298229	NM_001567.3	691	cGg/cAg																																																																															
SESN3	143686	MSKCC	GRCh37	11	94917607	94917607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	170	380	0	ENST00000536441.1:c.914C>T	p.Thr305Ile	p.T305I	ENST00000536441	NM_144665.3	305	aCt/aTt																																																																															
PGR	5241	MSKCC	GRCh37	11	100922293	100922293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149186732		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	102	207	0	ENST00000325455.5:c.2219G>A	p.Arg740Gln	p.R740Q	ENST00000325455	NM_001202474.3	740	cGa/cAa																																																																															
PGR	5241	MSKCC	GRCh37	11	100996859	100996859	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	235	424	0	ENST00000325455.5:c.1668A>C	p.Gln556His	p.Q556H	ENST00000325455	NM_001202474.3	556	caA/caC																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195500	102195500	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	215	316	0	ENST00000263464.3:c.260A>C	p.Lys87Thr	p.K87T	ENST00000263464	NM_001165.4	87	aAa/aCa																																																																															
BIRC3	330	MSKCC	GRCh37	11	102201891	102201891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	100	232	0	ENST00000263464.3:c.1243G>T	p.Asp415Tyr	p.D415Y	ENST00000263464	NM_001165.4	415	Gat/Tat																																																																															
ATM	472	MSKCC	GRCh37	11	108098563	108098563	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3218684		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	71	163	0	ENST00000278616.4:c.133C>T	p.Arg45Trp	p.R45W	ENST00000278616	NM_000051.3	45	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	165	254	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108126981	108126981	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	298	488	0	ENST00000278616.4:c.2164T>G	p.Leu722Val	p.L722V	ENST00000278616	NM_000051.3	722	Ttg/Gtg																																																																															
ATM	472	MSKCC	GRCh37	11	108155001	108155001	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	168	320	0	ENST00000278616.4:c.3794T>G	p.Phe1265Cys	p.F1265C	ENST00000278616	NM_000051.3	1265	tTt/tGt																																																																															
ATM	472	MSKCC	GRCh37	11	108164078	108164078	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs876660003		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	82	125	0	ENST00000278616.4:c.4650G>T	p.Lys1550Asn	p.K1550N	ENST00000278616	NM_000051.3	1550	aaG/aaT																																																																															
ATM	472	MSKCC	GRCh37	11	108186757	108186757	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs864622251		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	207	332	0	ENST00000278616.4:c.6115G>A	p.Glu2039Lys	p.E2039K	ENST00000278616	NM_000051.3	2039	Gaa/Aaa																																																																															
ATM	472	MSKCC	GRCh37	11	108199820	108199820	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	108	160	0	ENST00000278616.4:c.7162C>A	p.Leu2388Ile	p.L2388I	ENST00000278616	NM_000051.3	2388	Ctc/Atc																																																																															
ATM	472	MSKCC	GRCh37	11	108203493	108203493	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140263969		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	63	166	0	ENST00000278616.4:c.7793G>A	p.Arg2598Gln	p.R2598Q	ENST00000278616	NM_000051.3	2598	cGa/cAa																																																																															
ATM	472	MSKCC	GRCh37	11	108216568	108216568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs767845728		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	133	215	0	ENST00000278616.4:c.8517C>A	p.Phe2839Leu	p.F2839L	ENST00000278616	NM_000051.3	2839	ttC/ttA																																																																															
CBL	867	MSKCC	GRCh37	11	119167659	119167659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	254	438	0	ENST00000264033.4:c.2068G>A	p.Glu690Lys	p.E690K	ENST00000264033	NM_005188.3	690	Gag/Aag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	419123	419123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	149	209	0	ENST00000399788.2:c.3224G>T	p.Ser1075Ile	p.S1075I	ENST00000399788	NM_001042603.1	1075	aGc/aTc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	459846	459846	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	358	671	0	ENST00000399788.2:c.1249G>T	p.Asp417Tyr	p.D417Y	ENST00000399788	NM_001042603.1	417	Gac/Tac																																																																															
CCND2	894	MSKCC	GRCh37	12	4385236	4385236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	243	565	0	ENST00000261254.3:c.261C>A	p.Phe87Leu	p.F87L	ENST00000261254	NM_001759.3	87	ttC/ttA																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871777	12871777	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	76	158	0	ENST00000228872.4:c.494A>C	p.Lys165Thr	p.K165T	ENST00000228872	NM_004064.3	165	aAa/aCa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435082	18435082	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	112	248	0	ENST00000266497.5:c.67G>T	p.Glu23Ter	p.E23*	ENST00000266497		23	Gaa/Taa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435427	18435427	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	117	228	1	ENST00000266497.5:c.412G>T	p.Asp138Tyr	p.D138Y	ENST00000266497		138	Gat/Tat																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552608	18552608	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs760027403		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	177	287	1	ENST00000266497.5:c.2019G>T	p.Lys673Asn	p.K673N	ENST00000266497		673	aaG/aaT																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18719961	18719961	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	138	266	0	ENST00000266497.5:c.3858G>T	p.Gln1286His	p.Q1286H	ENST00000266497		1286	caG/caT																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18719983	18719983	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1416966490		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	99	209	0	ENST00000266497.5:c.3880G>A	p.Val1294Ile	p.V1294I	ENST00000266497		1294	Gtt/Att																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	133	294	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
ARID2	196528	MSKCC	GRCh37	12	46298734	46298734	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	128	189	0	ENST00000334344.6:c.5381A>G	p.Glu1794Gly	p.E1794G	ENST00000334344	NM_152641.2	1794	gAa/gGa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441765	49441765	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	314	566	0	ENST00000301067.7:c.4219T>G	p.Tyr1407Asp	p.Y1407D	ENST00000301067	NM_003482.3	1407	Tac/Gac																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56480320	56480320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	201	319	0	ENST00000267101.3:c.427C>A	p.Leu143Met	p.L143M	ENST00000267101	NM_001982.3	143	Ctg/Atg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56490288	56490288	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs1051947867		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	153	286	0	ENST00000267101.3:c.2057G>T	p.Ser686Ile	p.S686I	ENST00000267101	NM_001982.3	686	aGc/aTc																																																																															
IGF1	3479	MSKCC	GRCh37	12	102874103	102874103	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	112	231	0	ENST00000307046.8:c.57C>A	p.Phe19Leu	p.F19L	ENST00000307046	NM_001111285.1	19	ttC/ttA																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112891037	112891037	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	147	265	0	ENST00000351677.2:c.371A>C	p.Lys124Thr	p.K124T	ENST00000351677	NM_002834.3	124	aAa/aCa																																																																															
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519943		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	301	477	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																															
CDK8	1024	MSKCC	GRCh37	13	26974623	26974623	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	208	431	1	ENST00000381527.3:c.967C>T	p.Arg323Ter	p.R323*	ENST00000381527	NM_001260.1	323	Cga/Tga																																																																															
FLT3	2322	MSKCC	GRCh37	13	28597488	28597488	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs769640419		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	191	299	0	ENST00000241453.7:c.2417C>T	p.Ser806Leu	p.S806L	ENST00000241453	NM_004119.2	806	tCg/tTg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28631538	28631538	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	324	338	0	ENST00000241453.7:c.430T>G	p.Phe144Val	p.F144V	ENST00000241453	NM_004119.2	144	Ttt/Gtt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28883002	28883002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs115595062		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	207	438	0	ENST00000282397.4:c.3698C>T	p.Pro1233Leu	p.P1233L	ENST00000282397	NM_002019.4	1233	cCg/cTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28886180	28886180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	250	485	0	ENST00000282397.4:c.3442G>A	p.Ala1148Thr	p.A1148T	ENST00000282397	NM_002019.4	1148	Gca/Aca																																																																															
FLT1	2321	MSKCC	GRCh37	13	28886222	28886222	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	262	427	0	ENST00000282397.4:c.3400C>A	p.Leu1134Met	p.L1134M	ENST00000282397	NM_002019.4	1134	Ctg/Atg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28896448	28896448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	168	290	0	ENST00000282397.4:c.3002C>A	p.Ser1001Tyr	p.S1001Y	ENST00000282397	NM_002019.4	1001	tCt/tAt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008027	29008027	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	142	290	0	ENST00000282397.4:c.742C>A	p.Leu248Ile	p.L248I	ENST00000282397	NM_002019.4	248	Ctt/Att																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008270	29008270	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	151	276	1	ENST00000282397.4:c.601G>T	p.Glu201Ter	p.E201*	ENST00000282397	NM_002019.4	201	Gaa/Taa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912068	32912068	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	287	504	0	ENST00000380152.3:c.3576T>G	p.Phe1192Leu	p.F1192L	ENST00000380152		1192	ttT/ttG																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913384	32913384	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	330	267	0	ENST00000380152.3:c.4892A>C	p.Lys1631Thr	p.K1631T	ENST00000380152		1631	aAa/aCa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913729	32913729	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	127	277	0	ENST00000380152.3:c.5237C>A	p.Ser1746Tyr	p.S1746Y	ENST00000380152		1746	tCt/tAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914887	32914887	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	152	272	0	ENST00000380152.3:c.6395T>C	p.Leu2132Ser	p.L2132S	ENST00000380152		2132	tTa/tCa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972645	32972645	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876658246		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	219	291	0	ENST00000380152.3:c.9995C>A	p.Ser3332Tyr	p.S3332Y	ENST00000380152		3332	tCt/tAt																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134681	41134681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	333	314	0	ENST00000379561.5:c.947G>A	p.Arg316Gln	p.R316Q	ENST00000379561	NM_002015.3	316	cGa/cAa																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134924	41134924	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	176	278	0	ENST00000379561.5:c.704C>A	p.Ser235Tyr	p.S235Y	ENST00000379561	NM_002015.3	235	tCt/tAt																																																																															
RB1	5925	MSKCC	GRCh37	13	48941657	48941657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1060503077		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	62	130	0	ENST00000267163.4:c.967G>T	p.Glu323Ter	p.E323*	ENST00000267163	NM_000321.2	323	Gaa/Taa																																																																															
RB1	5925	MSKCC	GRCh37	13	48954217	48954217	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	72	142	0	ENST00000267163.4:c.1418T>G	p.Phe473Cys	p.F473C	ENST00000267163	NM_000321.2	473	tTt/tGt																																																																															
RB1	5925	MSKCC	GRCh37	13	49037919	49037919	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	136	306	0	ENST00000267163.4:c.2159A>C	p.Lys720Thr	p.K720T	ENST00000267163	NM_000321.2	720	aAa/aCa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346413	73346413	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	95	165	0	ENST00000377767.4:c.1387G>T	p.Asp463Tyr	p.D463Y	ENST00000377767	NM_014953.3	463	Gac/Tac																																																																															
DIS3	22894	MSKCC	GRCh37	13	73347916	73347916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139907646		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	10	220	0	ENST00000377767.4:c.1145G>A	p.Arg382Gln	p.R382Q	ENST00000377767	NM_014953.3	382	cGa/cAa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73352340	73352340	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	170	387	0	ENST00000377767.4:c.565A>G	p.Ile189Val	p.I189V	ENST00000377767	NM_014953.3	189	Ata/Gta																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437782	110437782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	357	888	0	ENST00000375856.3:c.619C>A	p.Leu207Met	p.L207M	ENST00000375856	NM_003749.2	207	Ctg/Atg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046482	30046482	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	253	507	0	ENST00000331968.5:c.2701G>T	p.Glu901Ter	p.E901*	ENST00000331968	NM_002742.2	901	Gaa/Taa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068243	30068243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	190	339	0	ENST00000331968.5:c.2156C>A	p.Pro719His	p.P719H	ENST00000331968	NM_002742.2	719	cCt/cAt																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871680	35871680	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	236	515	0	ENST00000216797.5:c.826A>C	p.Asn276His	p.N276H	ENST00000216797	NM_020529.2	276	Aac/Cac																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988565	36988565	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	441	1017	0	ENST00000354822.5:c.88A>C	p.Ile30Leu	p.I30L	ENST00000354822	NM_001079668.2	30	Atc/Ctc																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40683726	40683726	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	292	563	0	ENST00000249776.8:c.718G>T	p.Glu240Ter	p.E240*	ENST00000249776	NM_033286.3	240	Gaa/Taa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724829	43724829	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	259	527	0	ENST00000382044.4:c.3238G>T	p.Glu1080Ter	p.E1080*	ENST00000382044	NM_001141980.1	1080	Gaa/Taa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43766907	43766907	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765177854		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	118	218	1	ENST00000382044.4:c.1144G>A	p.Val382Ile	p.V382I	ENST00000382044	NM_001141980.1	382	Gtt/Att																																																																															
B2M	567	MSKCC	GRCh37	15	45007743	45007743	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	156	273	0	ENST00000558401.1:c.190G>T	p.Glu64Ter	p.E64*	ENST00000558401	NM_004048.2	64	Gag/Tag																																																																															
B2M	567	MSKCC	GRCh37	15	45007752	45007753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	165	264	0	ENST00000558401.1:c.204dup	p.Val69SerfsTer21	p.V69Sfs*21	ENST00000558401	NM_004048.2	67	gaa/gAaa																																																																															
B2M	567	MSKCC	GRCh37	15	45007894	45007895	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	138	194	0	ENST00000558401.1:c.343_344dup	p.Trp115CysfsTer31	p.W115Cfs*31	ENST00000558401	NM_004048.2	114	aag/aaGTg																																																																															
BLM	641	MSKCC	GRCh37	15	91290720	91290720	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs139282091		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	158	209	0	ENST00000355112.3:c.98C>T	p.Ser33Leu	p.S33L	ENST00000355112	NM_000057.2	33	tCa/tTa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99459939	99459939	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771230491		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	238	415	0	ENST00000268035.6:c.2035G>A	p.Asp679Asn	p.D679N	ENST00000268035	NM_000875.3	679	Gac/Aac																																																																															
AXIN1	8312	MSKCC	GRCh37	16	338190	338190	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs370661416		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	463	778	2	ENST00000262320.3:c.2521C>T	p.Arg841Ter	p.R841*	ENST00000262320	NM_003502.3	841	Cga/Tga																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396560	396560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	376	793	0	ENST00000262320.3:c.466G>A	p.Val156Met	p.V156M	ENST00000262320	NM_003502.3	156	Gtg/Atg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396689	396689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	347	621	0	ENST00000262320.3:c.337G>A	p.Asp113Asn	p.D113N	ENST00000262320	NM_003502.3	113	Gac/Aac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3901011	3901011	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs11644721		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	194	326	0	ENST00000262367.5:c.86-1G>T		p.X29_splice	ENST00000262367	NM_004380.2	29																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9857494	9857494	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	223	416	0	ENST00000330684.3:c.3907G>T	p.Asp1303Tyr	p.D1303Y	ENST00000330684	NM_001134407.1	1303	Gac/Tac																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041543	14041543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	225	371	0	ENST00000311895.7:c.2090C>A	p.Ser697Tyr	p.S697Y	ENST00000311895	NM_005236.2	697	tCt/tAt																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30134484	30134484	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	260	630	1	ENST00000263025.4:c.47G>T	p.Arg16Ile	p.R16I	ENST00000263025	NM_002746.2	16	aGa/aTa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50818342	50818342	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	139	256	0	ENST00000398568.2:c.1920A>C	p.Glu640Asp	p.E640D	ENST00000398568	NM_001042412.1	640	gaA/gaC																																																																															
CDH1	999	MSKCC	GRCh37	16	68842731	68842731	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	248	403	0	ENST00000261769.5:c.667G>T	p.Glu223Ter	p.E223*	ENST00000261769	NM_004360.3	223	Gaa/Taa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992945	72992945	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs768546151		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	402	880	0	ENST00000268489.5:c.1100A>C	p.Lys367Thr	p.K367T	ENST00000268489	NM_006885.3	367	aAa/aCa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942162	81942162	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760308218		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	292	631	1	ENST00000359376.3:c.1699G>A	p.Glu567Lys	p.E567K	ENST00000359376	NM_002661.3	567	Gag/Aag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81960697	81960697	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	227	543	0	ENST00000359376.3:c.2428G>T	p.Asp810Tyr	p.D810Y	ENST00000359376	NM_002661.3	810	Gac/Tac																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81965174	81965174	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199703276		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	332	709	0	ENST00000359376.3:c.2654C>T	p.Pro885Leu	p.P885L	ENST00000359376	NM_002661.3	885	cCg/cTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81972440	81972440	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs891516801		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	237	503	0	ENST00000359376.3:c.3233G>A	p.Arg1078Gln	p.R1078Q	ENST00000359376	NM_002661.3	1078	cGa/cAa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348674	89348674	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs963622923		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	399	734	0	ENST00000301030.4:c.4276G>A	p.Glu1426Lys	p.E1426K	ENST00000301030	NM_001256183.1	1426	Gaa/Aaa																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979514	7979514	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141010860		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	286	602	1	ENST00000319144.4:c.1511C>T	p.Ala504Val	p.A504V	ENST00000319144	NM_001139.2	504	gCg/gTg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984773	11984773	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	149	304	0	ENST00000353533.5:c.319G>T	p.Glu107Ter	p.E107*	ENST00000353533	NM_003010.3	107	Gaa/Taa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011200	12011200	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	91	170	0	ENST00000353533.5:c.607G>T	p.Glu203Ter	p.E203*	ENST00000353533	NM_003010.3	203	Gaa/Taa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15952232	15952232	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	342	671	0	ENST00000268712.3:c.6463G>T	p.Val2155Phe	p.V2155F	ENST00000268712	NM_006311.3	2155	Gtt/Ttt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974924	15974924	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	211	346	0	ENST00000268712.3:c.3951A>C	p.Gln1317His	p.Q1317H	ENST00000268712	NM_006311.3	1317	caA/caC																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16042448	16042448	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	210	361	0	ENST00000268712.3:c.1226A>C	p.Asp409Ala	p.D409A	ENST00000268712	NM_006311.3	409	gAt/gCt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16049796	16049796	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	193	267	0	ENST00000268712.3:c.976G>T	p.Glu326Ter	p.E326*	ENST00000268712	NM_006311.3	326	Gaa/Taa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131205	17131205	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs757060348		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	438	954	0	ENST00000285071.4:c.247G>A	p.Glu83Lys	p.E83K	ENST00000285071	NM_144997.5	83	Gag/Aag																																																																															
NF1	4763	MSKCC	GRCh37	17	29527518	29527518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	234	463	1	ENST00000358273.4:c.967G>A	p.Ala323Thr	p.A323T	ENST00000358273	NM_001042492.2	323	Gcc/Acc																																																																															
NF1	4763	MSKCC	GRCh37	17	29533316	29533316	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1466678870		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	152	209	0	ENST00000358273.4:c.1319G>A	p.Arg440Gln	p.R440Q	ENST00000358273	NM_001042492.2	440	cGa/cAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29554610	29554610	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1060500317		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	117	230	0	ENST00000358273.4:c.2395A>G	p.Met799Val	p.M799V	ENST00000358273	NM_001042492.2	799	Atg/Gtg																																																																															
NF1	4763	MSKCC	GRCh37	17	29684332	29684332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	255	385	0	ENST00000358273.4:c.7915C>A	p.Leu2639Ile	p.L2639I	ENST00000358273	NM_001042492.2	2639	Ctt/Att																																																																															
NF1	4763	MSKCC	GRCh37	17	29685556	29685556	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	196	346	0	ENST00000358273.4:c.8029T>G	p.Leu2677Val	p.L2677V	ENST00000358273	NM_001042492.2	2677	Ttg/Gtg																																																																															
RARA	5914	MSKCC	GRCh37	17	38508177	38508177	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749735817		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	270	494	0	ENST00000254066.5:c.485G>A	p.Arg162Gln	p.R162Q	ENST00000254066	NM_000964.3	162	cGa/cAa																																																																															
STAT3	6774	MSKCC	GRCh37	17	40500523	40500523	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	279	481	0	ENST00000264657.5:c.12G>A	p.Trp4Ter	p.W4*	ENST00000264657	NM_139276.2	4	tgG/tgA																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245866	41245866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	198	382	2	ENST00000357654.3:c.1682C>A	p.Ser561Tyr	p.S561Y	ENST00000357654	NM_007294.3	561	tCt/tAt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688752	47688752	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	212	356	0	ENST00000347630.2:c.548A>G	p.Glu183Gly	p.E183G	ENST00000347630	NM_001007230.1	183	gAg/gGg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440729	56440729	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	334	580	0	ENST00000407977.2:c.489G>T	p.Leu163Phe	p.L163F	ENST00000407977		163	ttG/ttT																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740542	58740542	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	225	456	0	ENST00000305921.3:c.1447A>C	p.Thr483Pro	p.T483P	ENST00000305921	NM_003620.3	483	Act/Cct																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66519915	66519915	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	209	365	0	ENST00000358598.2:c.398A>C	p.Glu133Ala	p.E133A	ENST00000358598	NM_212471.2	133	gAa/gCa																																																																															
YES1	7525	MSKCC	GRCh37	18	745793	745793	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	259	478	0	ENST00000314574.4:c.639A>C	p.Lys213Asn	p.K213N	ENST00000314574	NM_005433.3	213	aaA/aaC																																																																															
YES1	7525	MSKCC	GRCh37	18	756746	756746	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	259	403	0	ENST00000314574.4:c.82A>C	p.Ser28Arg	p.S28R	ENST00000314574	NM_005433.3	28	Agt/Cgt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39570468	39570468	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs267605182		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	63	184	0	ENST00000262039.4:c.664C>T	p.Arg222Ter	p.R222*	ENST00000262039	NM_002647.2	222	Cga/Tga																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39637927	39637927	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	272	421	2	ENST00000262039.4:c.2344G>T	p.Glu782Ter	p.E782*	ENST00000262039	NM_002647.2	782	Gaa/Taa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56402511	56402511	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	98	148	0	ENST00000348428.3:c.1553G>T	p.Arg518Ile	p.R518I	ENST00000348428	NM_006785.3	518	aGa/aTa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244287	5244287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	484	1110	0	ENST00000357368.4:c.1195G>A	p.Glu399Lys	p.E399K	ENST00000357368	NM_002850.3	399	Gag/Aag																																																																															
INSR	3643	MSKCC	GRCh37	19	7267686	7267686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	351	528	0	ENST00000302850.5:c.322G>A	p.Val108Ile	p.V108I	ENST00000302850	NM_000208.2	108	Gtc/Atc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281521	15281521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	411	839	0	ENST00000263388.2:c.4852G>A	p.Glu1618Lys	p.E1618K	ENST00000263388	NM_000435.2	1618	Gag/Aag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15295132	15295132	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	440	841	0	ENST00000263388.2:c.2540A>C	p.Asp847Ala	p.D847A	ENST00000263388	NM_000435.2	847	gAt/gCt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302461	15302461	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	438	899	0	ENST00000263388.2:c.810C>A	p.Phe270Leu	p.F270L	ENST00000263388	NM_000435.2	270	ttC/ttA																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793245	33793245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	105	178	0	ENST00000498907.2:c.76C>T	p.Pro26Ser	p.P26S	ENST00000498907	NM_004364.3	26	Ccc/Tcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222962	36222962	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs181607228		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	498	1225	2	ENST00000222270.7:c.5591G>A	p.Arg1864Gln	p.R1864Q	ENST00000222270	NM_014727.1	1864	cGa/cAa																																																																															
AKT2	208	MSKCC	GRCh37	19	40744853	40744853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780894376		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	374	735	0	ENST00000392038.2:c.667G>A	p.Asp223Asn	p.D223N	ENST00000392038	NM_001626.4	223	Gac/Aac																																																																															
AXL	558	MSKCC	GRCh37	19	41726744	41726744	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	404	891	0	ENST00000301178.4:c.289A>G	p.Ile97Val	p.I97V	ENST00000301178	NM_021913.4	97	Ata/Gta																																																																															
CIC	23152	MSKCC	GRCh37	19	42792017	42792017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	474	816	0	ENST00000575354.2:c.821G>A	p.Arg274Gln	p.R274Q	ENST00000575354	NM_015125.3	274	cGa/cAa																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52719286	52719286	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775654171		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	339	611	2	ENST00000322088.6:c.952C>T	p.Arg318Trp	p.R318W	ENST00000322088	NM_014225.5	318	Cgg/Tgg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25471102	25471102	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	380	786	0	ENST00000264709.3:c.659T>C	p.Val220Ala	p.V220A	ENST00000264709	NM_175629.2	220	gTc/gCc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25978930	25978930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	173	344	0	ENST00000435504.4:c.993C>A	p.Phe331Leu	p.F331L	ENST00000435504		331	ttC/ttA																																																																															
CENPA	1058	MSKCC	GRCh37	2	27009097	27009097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	120	201	0	ENST00000335756.4:c.33G>T	p.Glu11Asp	p.E11D	ENST00000335756	NM_001809.3	11	gaG/gaT																																																																															
SOS1	6654	MSKCC	GRCh37	2	39249941	39249941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	285	529	0	ENST00000402219.2:c.1628C>A	p.Ser543Tyr	p.S543Y	ENST00000402219	NM_005633.3	543	tCt/tAt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39278385	39278385	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	244	512	0	ENST00000402219.2:c.764T>G	p.Leu255Arg	p.L255R	ENST00000402219	NM_005633.3	255	cTt/cGt																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46609693	46609693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	382	847	0	ENST00000263734.3:c.2417C>T	p.Thr806Ile	p.T806I	ENST00000263734	NM_001430.4	806	aCc/aTc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47672784	47672784	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	190	366	0	ENST00000233146.2:c.1374A>T	p.Leu458Phe	p.L458F	ENST00000233146	NM_000251.2	458	ttA/ttT																																																																															
MSH2	4436	MSKCC	GRCh37	2	47693876	47693876	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	155	277	0	ENST00000233146.2:c.1590A>C	p.Glu530Asp	p.E530D	ENST00000233146	NM_000251.2	530	gaA/gaC																																																																															
REL	5966	MSKCC	GRCh37	2	61118926	61118926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	171	313	2	ENST00000295025.8:c.119G>A	p.Ser40Asn	p.S40N	ENST00000295025	NM_002908.2	40	aGc/aAc																																																																															
REL	5966	MSKCC	GRCh37	2	61118953	61118953	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	216	289	0	ENST00000295025.8:c.146C>A	p.Ser49Tyr	p.S49Y	ENST00000295025	NM_002908.2	49	tCt/tAt																																																																															
REL	5966	MSKCC	GRCh37	2	61128147	61128147	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1016724251		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	98	165	0	ENST00000295025.8:c.323G>A	p.Arg108Gln	p.R108Q	ENST00000295025	NM_002908.2	108	cGa/cAa																																																																															
REL	5966	MSKCC	GRCh37	2	61149488	61149488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	156	268	0	ENST00000295025.8:c.1678G>A	p.Asp560Asn	p.D560N	ENST00000295025	NM_002908.2	560	Gat/Aat																																																																															
XPO1	7514	MSKCC	GRCh37	2	61715852	61715852	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	213	369	0	ENST00000401558.2:c.2077A>G	p.Lys693Glu	p.K693E	ENST00000401558	NM_003400.3	693	Aaa/Gaa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520009		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	161	331	1	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99152295	99152295	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	179	284	0	ENST00000074304.5:c.374G>T	p.Arg125Ile	p.R125I	ENST00000074304	NM_001134224.1	125	aGa/aTa																																																																															
ACVR1	90	MSKCC	GRCh37	2	158595025	158595025	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	197	342	0	ENST00000263640.3:c.1322T>G	p.Phe441Cys	p.F441C	ENST00000263640	NM_001105.4	441	tTt/tGt																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719665	190719665	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	72	121	0	ENST00000441310.2:c.1667A>C	p.Lys556Thr	p.K556T	ENST00000441310	NM_000534.4	556	aAa/aCa																																																																															
CASP8	841	MSKCC	GRCh37	2	202131412	202131412	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1339962485		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	232	405	0	ENST00000358485.4:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000358485	NM_001080125.1	127	cGa/cAa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248623	212248623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	255	471	0	ENST00000342788.4:c.3644C>T	p.Thr1215Ile	p.T1215I	ENST00000342788	NM_005235.2	1215	aCc/aTc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248705	212248705	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	207	370	0	ENST00000342788.4:c.3562T>C	p.Tyr1188His	p.Y1188H	ENST00000342788	NM_005235.2	1188	Tat/Cat																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212495254	212495254	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	166	421	0	ENST00000342788.4:c.2012T>C	p.Phe671Ser	p.F671S	ENST00000342788	NM_005235.2	671	tTt/tCt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212652879	212652879	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1375692246		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	124	210	0	ENST00000342788.4:c.427C>A	p.Leu143Ile	p.L143I	ENST00000342788	NM_005235.2	143	Cta/Ata																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624870	9624870	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs896197201		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	263	537	0	ENST00000353224.5:c.107C>T	p.Pro36Leu	p.P36L	ENST00000353224	NM_177990.2	36	cCc/cTc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022592	31022592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs373221034		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	279	562	2	ENST00000375687.4:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000375687	NM_015338.5	693	Cga/Tga																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31376766	31376766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	342	623	1	ENST00000328111.2:c.761C>T	p.Ala254Val	p.A254V	ENST00000328111	NM_006892.3	254	gCt/gTt																																																																															
TOP1	7150	MSKCC	GRCh37	20	39728729	39728729	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	117	212	1	ENST00000361337.2:c.1009G>T	p.Glu337Ter	p.E337*	ENST00000361337	NM_003286.2	337	Gaa/Taa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46268565	46268565	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	150	239	0	ENST00000371998.3:c.2952G>T	p.Met984Ile	p.M984I	ENST00000371998		984	atG/atT																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945705	54945705	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	194	475	0	ENST00000312783.6:c.865C>A	p.Leu289Ile	p.L289I	ENST00000312783	NM_198436.1	289	Ctc/Atc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206833	36206833	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	299	457	0	ENST00000300305.3:c.679G>T	p.Glu227Ter	p.E227*	ENST00000300305		227	Gaa/Taa																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22221721	22221721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	45	85	0	ENST00000215832.6:c.10G>A	p.Ala4Thr	p.A4T	ENST00000215832	NM_002745.4	4	Gcg/Acg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29092931	29092931	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782268		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	222	371	0	ENST00000328354.6:c.1053G>T	p.Glu351Asp	p.E351D	ENST00000328354	NM_007194.3	351	gaG/gaT																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29115459	29115459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	157	218	0	ENST00000328354.6:c.607G>T	p.Asp203Tyr	p.D203Y	ENST00000328354	NM_007194.3	203	Gat/Tat																																																																															
EP300	2033	MSKCC	GRCh37	22	41533773	41533773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	249	324	1	ENST00000263253.7:c.1739G>A	p.Arg580Gln	p.R580Q	ENST00000263253	NM_001429.3	580	cGa/cAa																																																																															
RAF1	5894	MSKCC	GRCh37	3	12641905	12641905	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs755926381		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	123	222	0	ENST00000251849.4:c.844C>T	p.Arg282Ter	p.R282*	ENST00000251849	NM_002880.3	282	Cga/Tga																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267291	41267291	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	163	285	0	ENST00000349496.5:c.875A>C	p.Lys292Thr	p.K292T	ENST00000349496	NM_001904.3	292	aAa/aCa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098816	47098816	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	391	763	0	ENST00000409792.3:c.6458A>C	p.Asp2153Ala	p.D2153A	ENST00000409792	NM_014159.6	2153	gAc/gCc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147533	47147533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	189	334	0	ENST00000409792.3:c.4793G>A	p.Arg1598Gln	p.R1598Q	ENST00000409792	NM_014159.6	1598	cGa/cAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162426	47162426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	184	298	0	ENST00000409792.3:c.3700G>A	p.Glu1234Lys	p.E1234K	ENST00000409792	NM_014159.6	1234	Gaa/Aaa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163941	47163941	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	163	280	0	ENST00000409792.3:c.2185G>T	p.Glu729Ter	p.E729*	ENST00000409792	NM_014159.6	729	Gaa/Taa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165406	47165406	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	186	323	1	ENST00000409792.3:c.720A>T	p.Glu240Asp	p.E240D	ENST00000409792	NM_014159.6	240	gaA/gaT																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	171	256	1	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620542	52620542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	256	443	1	ENST00000394830.3:c.3211C>T	p.Arg1071Cys	p.R1071C	ENST00000394830	NM_018313.4	1071	Cgc/Tgc																																																																															
MITF	4286	MSKCC	GRCh37	3	69986988	69986988	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs994568417		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	223	464	1	ENST00000352241.4:c.370G>A	p.Glu124Lys	p.E124K	ENST00000352241	NM_198159.2	124	Gaa/Aaa																																																																															
MITF	4286	MSKCC	GRCh37	3	69990402	69990402	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765051386		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	111	230	0	ENST00000352241.4:c.682G>A	p.Asp228Asn	p.D228N	ENST00000352241	NM_198159.2	228	Gat/Aat																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799799	72799799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779590242		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	274	465	1	ENST00000325599.8:c.1370C>T	p.Ser457Leu	p.S457L	ENST00000325599	NM_018130.2	457	tCg/tTg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259477	89259477	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200567888		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	199	399	0	ENST00000336596.2:c.621G>T	p.Lys207Asn	p.K207N	ENST00000336596	NM_005233.5	207	aaG/aaT																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259557	89259557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	158	338	0	ENST00000336596.2:c.701C>T	p.Ser234Phe	p.S234F	ENST00000336596	NM_005233.5	234	tCt/tTt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480466	89480466	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1446890859		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	133	275	0	ENST00000336596.2:c.2303C>T	p.Ser768Leu	p.S768L	ENST00000336596	NM_005233.5	768	tCg/tTg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119720994	119720994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	268	508	1	ENST00000316626.5:c.181G>A	p.Val61Met	p.V61M	ENST00000316626		61	Gtg/Atg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119721018	119721018	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	303	533	0	ENST00000316626.5:c.157G>T	p.Glu53Ter	p.E53*	ENST00000316626		53	Gaa/Taa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138423336	138423336	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	134	214	0	ENST00000289153.2:c.1531-1G>T		p.X511_splice	ENST00000289153	NM_006219.2	511																																																																																
PIK3CB	5291	MSKCC	GRCh37	3	138453486	138453486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	139	267	0	ENST00000289153.2:c.962G>T	p.Arg321Leu	p.R321L	ENST00000289153	NM_006219.2	321	cGa/cTa																																																																															
ATR	545	MSKCC	GRCh37	3	142268419	142268419	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs980426116		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	126	295	0	ENST00000350721.4:c.3073C>T	p.Arg1025Cys	p.R1025C	ENST00000350721	NM_001184.3	1025	Cgt/Tgt																																																																															
ATR	545	MSKCC	GRCh37	3	142274749	142274749	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1232704868		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	154	272	0	ENST00000350721.4:c.2311A>C	p.Lys771Gln	p.K771Q	ENST00000350721	NM_001184.3	771	Aaa/Caa																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260150	149260150	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761556137		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	224	548	0	ENST00000360632.3:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000360632	NM_015472.4	248	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916659	178916659	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	135	217	0	ENST00000263967.3:c.46A>G	p.Met16Val	p.M16V	ENST00000263967	NM_006218.2	16	Atg/Gtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916855	178916855	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	261	464	0	ENST00000263967.3:c.242A>C	p.Glu81Ala	p.E81A	ENST00000263967	NM_006218.2	81	gAa/gCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928106	178928106	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1242912405		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	187	359	0	ENST00000263967.3:c.1384A>G	p.Thr462Ala	p.T462A	ENST00000263967	NM_006218.2	462	Act/Gct																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182679095	182679095	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	119	363	0	ENST00000292782.4:c.439G>T	p.Glu147Ter	p.E147*	ENST00000292782	NM_020640.2	147	Gaa/Taa																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182679145	182679145	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	103	304	0	ENST00000292782.4:c.390-1G>T		p.X130_splice	ENST00000292782	NM_020640.2	130																																																																																
BCL6	604	MSKCC	GRCh37	3	187451439	187451439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	243	424	0	ENST00000232014.4:c.43G>A	p.Ala15Thr	p.A15T	ENST00000232014	NM_001130845.1	15	Gcc/Acc																																																																															
TP63	8626	MSKCC	GRCh37	3	189612028	189612028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	269	475	0	ENST00000264731.3:c.1780C>T	p.Arg594Ter	p.R594*	ENST00000264731	NM_003722.4	594	Cga/Tga																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957774	1957774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	342	655	0	ENST00000382895.3:c.2740G>A	p.Glu914Lys	p.E914K	ENST00000382895	NM_133330.2	914	Gag/Aag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55131175	55131175	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	234	439	0	ENST00000257290.5:c.718A>G	p.Asn240Asp	p.N240D	ENST00000257290	NM_006206.4	240	Aat/Gat																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156540	55156540	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775205485		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	243	500	0	ENST00000257290.5:c.2941C>T	p.Arg981Cys	p.R981C	ENST00000257290	NM_006206.4	981	Cgt/Tgt																																																																															
KIT	3815	MSKCC	GRCh37	4	55594094	55594094	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs794726675		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	168	325	1	ENST00000288135.5:c.1879+1G>A		p.X627_splice	ENST00000288135	NM_000222.2	627																																																																																
KIT	3815	MSKCC	GRCh37	4	55597510	55597510	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	175	320	0	ENST00000288135.5:c.2158G>T	p.Glu720Ter	p.E720*	ENST00000288135	NM_000222.2	720	Gag/Tag																																																																															
KIT	3815	MSKCC	GRCh37	4	55599298	55599298	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	216	369	0	ENST00000288135.5:c.2424T>G	p.Ile808Met	p.I808M	ENST00000288135	NM_000222.2	808	atT/atG																																																																															
KDR	3791	MSKCC	GRCh37	4	55968610	55968610	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374980446		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	327	522	1	ENST00000263923.4:c.2053G>A	p.Glu685Lys	p.E685K	ENST00000263923	NM_002253.2	685	Gaa/Aaa																																																																															
KDR	3791	MSKCC	GRCh37	4	55972931	55972931	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	220	419	0	ENST00000263923.4:c.1459A>G	p.Ser487Gly	p.S487G	ENST00000263923	NM_002253.2	487	Agt/Ggt																																																																															
KDR	3791	MSKCC	GRCh37	4	55976936	55976936	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	200	305	1	ENST00000263923.4:c.977-1G>T		p.X326_splice	ENST00000263923	NM_002253.2	326																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66189912	66189912	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	142	263	0	ENST00000273854.3:c.3034C>A	p.Leu1012Ile	p.L1012I	ENST00000273854	NM_004439.5	1012	Ctt/Att																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213774	66213774	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	152	283	0	ENST00000273854.3:c.2656G>T	p.Asp886Tyr	p.D886Y	ENST00000273854	NM_004439.5	886	Gat/Tat																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217159	66217159	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	244	402	0	ENST00000273854.3:c.2456T>C	p.Phe819Ser	p.F819S	ENST00000273854	NM_004439.5	819	tTt/tCt																																																																															
TET2	54790	MSKCC	GRCh37	4	106193889	106193889	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1395976555		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	166	253	0	ENST00000380013.4:c.4351C>T	p.Arg1451Trp	p.R1451W	ENST00000380013	NM_001127208.2	1451	Cgg/Tgg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143159134	143159134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	105	217	0	ENST00000262992.4:c.719G>T	p.Arg240Ile	p.R240I	ENST00000262992	NM_001101669.1	240	aGa/aTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542692	187542692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	217	334	0	ENST00000441802.2:c.5048G>T	p.Gly1683Val	p.G1683V	ENST00000441802	NM_005245.3	1683	gGg/gTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584475	187584475	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1163622953		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	124	258	0	ENST00000441802.2:c.3558C>A	p.Phe1186Leu	p.F1186L	ENST00000441802	NM_005245.3	1186	ttC/ttA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628184	187628184	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61733570		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	320	630	0	ENST00000441802.2:c.2798G>A	p.Arg933His	p.R933H	ENST00000441802	NM_005245.3	933	cGt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629472	187629472	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	244	545	0	ENST00000441802.2:c.1510A>C	p.Asn504His	p.N504H	ENST00000441802	NM_005245.3	504	Aat/Cat																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950817	38950817	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	56	128	0	ENST00000357387.3:c.3133T>C	p.Phe1045Leu	p.F1045L	ENST00000357387	NM_152756.3	1045	Ttc/Ctc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38960627	38960627	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376491170		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	72	161	0	ENST00000357387.3:c.1724G>A	p.Arg575Gln	p.R575Q	ENST00000357387	NM_152756.3	575	cGa/cAa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754855	57754855	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	142	253	0	ENST00000274289.3:c.335T>G	p.Ile112Ser	p.I112S	ENST00000274289	NM_006622.3	112	aTt/aGt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576522	67576522	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	158	274	0	ENST00000274335.5:c.801T>G	p.Ile267Met	p.I267M	ENST00000274335		267	atT/atG																																																																															
RASA1	5921	MSKCC	GRCh37	5	86682692	86682692	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757298110		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	60	158	0	ENST00000274376.6:c.2897G>A	p.Arg966His	p.R966H	ENST00000274376	NM_002890.2	966	cGt/cAt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685209	86685209	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	97	146	0	ENST00000274376.6:c.2926-1G>T		p.X976_splice	ENST00000274376	NM_002890.2	976																																																																																
APC	324	MSKCC	GRCh37	5	112102048	112102048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	67	219	0	ENST00000257430.4:c.161G>T	p.Ser54Ile	p.S54I	ENST00000257430	NM_000038.5	54	aGt/aTt																																																																															
APC	324	MSKCC	GRCh37	5	112173912	112173912	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	140	291	0	ENST00000257430.4:c.2621C>A	p.Ser874Ter	p.S874*	ENST00000257430	NM_000038.5	874	tCa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267600319		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	184	281	0	ENST00000257430.4:c.4199C>T	p.Ser1400Leu	p.S1400L	ENST00000257430	NM_000038.5	1400	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112175921	112175921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	89	148	0	ENST00000257430.4:c.4630G>T	p.Glu1544Ter	p.E1544*	ENST00000257430	NM_000038.5	1544	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112176873	112176873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	273	253	0	ENST00000257430.4:c.5582C>A	p.Ser1861Tyr	p.S1861Y	ENST00000257430	NM_000038.5	1861	tCt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112176882	112176882	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	133	260	0	ENST00000257430.4:c.5591C>A	p.Ser1864Tyr	p.S1864Y	ENST00000257430	NM_000038.5	1864	tCt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112177368	112177368	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	125	228	0	ENST00000257430.4:c.6077C>A	p.Ser2026Tyr	p.S2026Y	ENST00000257430	NM_000038.5	2026	tCt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs768922431		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	165	307	1	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga																																																																															
RAD50	10111	MSKCC	GRCh37	5	131915058	131915058	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	196	351	1	ENST00000265335.6:c.415G>T	p.Glu139Ter	p.E139*	ENST00000265335		139	Gaa/Taa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131925500	131925500	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs867459964		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	139	209	0	ENST00000265335.6:c.1423C>A	p.Leu475Ile	p.L475I	ENST00000265335		475	Ctt/Att																																																																															
RAD50	10111	MSKCC	GRCh37	5	131939718	131939718	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	141	230	0	ENST00000265335.6:c.2504A>C	p.Lys835Thr	p.K835T	ENST00000265335		835	aAa/aCa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149457707	149457707	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	368	731	0	ENST00000286301.3:c.697T>G	p.Phe233Val	p.F233V	ENST00000286301	NM_005211.3	233	Ttt/Gtt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149504305	149504305	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780819031		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	362	797	1	ENST00000261799.4:c.1897G>A	p.Val633Ile	p.V633I	ENST00000261799	NM_002609.3	633	Gtc/Atc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149504382	149504382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	373	761	0	ENST00000261799.4:c.1820G>A	p.Gly607Asp	p.G607D	ENST00000261799	NM_002609.3	607	gGc/gAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562133	176562133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	241	441	0	ENST00000439151.2:c.29G>T	p.Arg10Ile	p.R10I	ENST00000439151	NM_022455.4	10	aGa/aTa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176665317	176665317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	196	313	0	ENST00000439151.2:c.4001C>A	p.Ser1334Tyr	p.S1334Y	ENST00000439151	NM_022455.4	1334	tCt/tAt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057087	180057087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	343	869	2	ENST00000261937.6:c.532C>T	p.Pro178Ser	p.P178S	ENST00000261937	NM_182925.4	178	Cca/Tca																																																																															
E2F3	1871	MSKCC	GRCh37	6	20490441	20490441	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	240	483	0	ENST00000346618.3:c.1178C>A	p.Ser393Tyr	p.S393Y	ENST00000346618	NM_001949.4	393	tCt/tAt																																																																															
STK19	8859	MSKCC	GRCh37	6	31940421	31940421	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	406	1021	1	ENST00000375331.2:c.454G>T	p.Glu152Ter	p.E152*	ENST00000375331	NM_004197.1	152	Gaa/Taa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166902	32166902	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	494	1094	0	ENST00000375023.3:c.4336C>A	p.Pro1446Thr	p.P1446T	ENST00000375023	NM_004557.3	1446	Ccc/Acc																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64286793	64286793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	178	278	0	ENST00000370651.3:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000370651	NM_003463.4	3	cGa/cAa																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64290014	64290014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	205	365	0	ENST00000370651.3:c.457C>T	p.Arg153Cys	p.R153C	ENST00000370651	NM_003463.4	153	Cgt/Tgt																																																																															
FYN	2534	MSKCC	GRCh37	6	112029203	112029203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	162	338	0	ENST00000368678.4:c.365C>T	p.Ala122Val	p.A122V	ENST00000368678		122	gCc/gTc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662700	117662700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	178	347	0	ENST00000368508.3:c.4765G>A	p.Glu1589Lys	p.E1589K	ENST00000368508	NM_002944.2	1589	Gaa/Aaa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117715350	117715350	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1466068877		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	106	206	0	ENST00000368508.3:c.1139G>T	p.Arg380Ile	p.R380I	ENST00000368508	NM_002944.2	380	aGa/aTa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117717404	117717404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	114	268	0	ENST00000368508.3:c.803A>G	p.Glu268Gly	p.E268G	ENST00000368508	NM_002944.2	268	gAa/gGa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199623	138199623	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	193	325	0	ENST00000237289.4:c.1041A>C	p.Glu347Asp	p.E347D	ENST00000237289	NM_001270507.1	347	gaA/gaC																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163911	152163911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	188	383	0	ENST00000206249.3:c.632G>T	p.Arg211Ile	p.R211I	ENST00000206249	NM_000125.3	211	aGa/aTa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157469898	157469898	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs794727977		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	308	641	0	ENST00000346085.5:c.2692C>T	p.Arg898Ter	p.R898*	ENST00000346085	NM_020732.3	898	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2963878	2963878	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	332	662	1	ENST00000396946.4:c.1929C>A	p.Phe643Leu	p.F643L	ENST00000396946	NM_032415.4	643	ttC/ttA																																																																															
ETV1	2115	MSKCC	GRCh37	7	14027744	14027744	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	144	286	0	ENST00000405192.2:c.100T>G	p.Phe34Val	p.F34V	ENST00000405192	NM_001163147.1	34	Ttc/Gtc																																																																															
ETV1	2115	MSKCC	GRCh37	7	14027749	14027749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	142	280	0	ENST00000405192.2:c.95G>T	p.Arg32Ile	p.R32I	ENST00000405192	NM_001163147.1	32	aGa/aTa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509038	106509038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	262	568	2	ENST00000359195.3:c.1032G>T	p.Lys344Asn	p.K344N	ENST00000359195	NM_002649.2	344	aaG/aaT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513314	106513314	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs559655430		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	150	248	0	ENST00000359195.3:c.2218G>A	p.Glu740Lys	p.E740K	ENST00000359195	NM_002649.2	740	Gag/Aag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523477	106523477	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	89	163	1	ENST00000359195.3:c.2630-1G>T		p.X877_splice	ENST00000359195	NM_002649.2	877																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106523517	106523517	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	104	198	0	ENST00000359195.3:c.2669A>C	p.Lys890Thr	p.K890T	ENST00000359195	NM_002649.2	890	aAa/aCa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526618	106526618	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	206	315	0	ENST00000359195.3:c.2911A>C	p.Asn971His	p.N971H	ENST00000359195	NM_002649.2	971	Aat/Cat																																																																															
MET	4233	MSKCC	GRCh37	7	116398665	116398665	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1351264833		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	152	266	0	ENST00000397752.3:c.2255C>A	p.Ser752Tyr	p.S752Y	ENST00000397752	NM_000245.2	752	tCt/tAt																																																																															
SMO	6608	MSKCC	GRCh37	7	128846318	128846318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	370	743	0	ENST00000249373.3:c.1154C>A	p.Ser385Tyr	p.S385Y	ENST00000249373	NM_005631.4	385	tCt/tAt																																																																															
EZH2	2146	MSKCC	GRCh37	7	148514441	148514441	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	180	335	0	ENST00000320356.2:c.1283A>C	p.Asn428Thr	p.N428T	ENST00000320356	NM_004456.4	428	aAt/aCt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151849901	151849901	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	199	394	0	ENST00000262189.6:c.12415C>T	p.Arg4139Ter	p.R4139*	ENST00000262189	NM_170606.2	4139	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151851373	151851373	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	222	419	0	ENST00000262189.6:c.12118C>A	p.Leu4040Ile	p.L4040I	ENST00000262189	NM_170606.2	4040	Ctt/Att																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873888	151873888	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	197	328	0	ENST00000262189.6:c.8650C>T	p.Arg2884Ter	p.R2884*	ENST00000262189	NM_170606.2	2884	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891566	151891566	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	181	338	0	ENST00000262189.6:c.4466A>C	p.Asp1489Ala	p.D1489A	ENST00000262189	NM_170606.2	1489	gAt/gCt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945012	151945012	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	11	41	0	ENST00000262189.6:c.2507C>A	p.Ser836Tyr	p.S836Y	ENST00000262189	NM_170606.2	836	tCt/tAt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38134017	38134017	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs377462564		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	204	360	0	ENST00000317025.8:c.3869C>T	p.Ser1290Leu	p.S1290L	ENST00000317025	NM_023034.1	1290	tCg/tTg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146216	38146216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	1046	686	0	ENST00000317025.8:c.3290G>A	p.Arg1097His	p.R1097H	ENST00000317025	NM_023034.1	1097	cGc/cAc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162254	38162254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	176	279	0	ENST00000317025.8:c.2462G>T	p.Arg821Ile	p.R821I	ENST00000317025	NM_023034.1	821	aGa/aTa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205681	38205681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	788	458	0	ENST00000317025.8:c.9C>A	p.Phe3Leu	p.F3L	ENST00000317025	NM_023034.1	3	ttC/ttA																																																																															
PREX2	80243	MSKCC	GRCh37	8	69129936	69129936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	158	326	0	ENST00000288368.4:c.4690G>T	p.Asp1564Tyr	p.D1564Y	ENST00000288368	NM_024870.2	1564	Gat/Tat																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70967581	70967581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	299	524	0	ENST00000276594.2:c.1442G>A	p.Arg481Gln	p.R481Q	ENST00000276594	NM_024504.3	481	cGa/cAa																																																																															
NBN	4683	MSKCC	GRCh37	8	90965872	90965872	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775451862		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	122	220	0	ENST00000265433.3:c.1445G>A	p.Arg482Lys	p.R482K	ENST00000265433	NM_002485.4	482	aGa/aAa																																																																															
NBN	4683	MSKCC	GRCh37	8	90982702	90982702	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs372159380		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	146	300	0	ENST00000265433.3:c.786C>A	p.Phe262Leu	p.F262L	ENST00000265433	NM_002485.4	262	ttC/ttA																																																																															
MYC	4609	MSKCC	GRCh37	8	128752966	128752966	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	170	343	0	ENST00000377970.2:c.1127T>C	p.Val376Ala	p.V376A	ENST00000377970	NM_002467.4	376	gTc/gCc																																																																															
CD274	29126	MSKCC	GRCh37	9	5457400	5457400	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1480335907		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	76	110	1	ENST00000381577.3:c.374G>A	p.Arg125Gln	p.R125Q	ENST00000381577	NM_014143.3	125	cGa/cAa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319934	8319934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764537367		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	141	238	0	ENST00000356435.5:c.5567C>T	p.Thr1856Met	p.T1856M	ENST00000356435		1856	aCg/aTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528645	8528645	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	207	320	0	ENST00000356435.5:c.487T>G	p.Phe163Val	p.F163V	ENST00000356435		163	Ttc/Gtc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971051	21971051	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767642535		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	303	691	0	ENST00000304494.5:c.307C>T	p.Arg103Trp	p.R103W	ENST00000304494	NM_000077.4	103	Cgg/Tgg																																																																															
TEK	7010	MSKCC	GRCh37	9	27183570	27183570	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	222	378	0	ENST00000380036.4:c.1144G>T	p.Glu382Ter	p.E382*	ENST00000380036	NM_000459.3	382	Gaa/Taa																																																																															
TEK	7010	MSKCC	GRCh37	9	27192616	27192616	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	164	325	2	ENST00000380036.4:c.1619C>A	p.Ser540Tyr	p.S540Y	ENST00000380036	NM_000459.3	540	tCt/tAt																																																																															
TEK	7010	MSKCC	GRCh37	9	27206779	27206779	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	232	406	0	ENST00000380036.4:c.2564A>C	p.Lys855Thr	p.K855T	ENST00000380036	NM_000459.3	855	aAa/aCa																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80336291	80336291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	158	333	0	ENST00000286548.4:c.1028C>T	p.Ala343Val	p.A343V	ENST00000286548	NM_002072.3	343	gCc/gTc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87482298	87482298	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	294	547	0	ENST00000277120.3:c.1585A>C	p.Asn529His	p.N529H	ENST00000277120		529	Aat/Cat																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98248030	98248030	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772368023		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	217	472	0	ENST00000331920.6:c.521C>T	p.Ala174Val	p.A174V	ENST00000331920	NM_000264.3	174	gCg/gTg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111854391		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	171	276	1	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249860	110249860	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770068428		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	381	948	0	ENST00000374672.4:c.815G>A	p.Arg272His	p.R272H	ENST00000374672	NM_004235.4	272	cGc/cAc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135779816	135779816	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768189353		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	221	341	0	ENST00000298552.3:c.2023G>A	p.Asp675Asn	p.D675N	ENST00000298552	NM_001162426.1	675	Gac/Aac																																																																															
TSC1	7248	MSKCC	GRCh37	9	135801020	135801020	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	196	333	0	ENST00000298552.3:c.317A>C	p.Lys106Thr	p.K106T	ENST00000298552	NM_001162426.1	106	aAg/aCg																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15836765	15836765	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs775309730		P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	258	209	0	ENST00000307771.7:c.827C>T	p.Ser276Leu	p.S276L	ENST00000307771	NM_005089.3	276	tCg/tTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53253955	53253955	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	357	406	0	ENST00000375401.3:c.117G>T	p.Glu39Asp	p.E39D	ENST00000375401	NM_004187.3	39	gaG/gaT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412011	63412011	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	292	331	0	ENST00000330258.3:c.1156G>T	p.Glu386Ter	p.E386*	ENST00000330258	NM_152424.3	386	Gaa/Taa																																																																															
AR	367	MSKCC	GRCh37	X	66765792	66765792	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	489	658	0	ENST00000374690.3:c.804G>T	p.Met268Ile	p.M268I	ENST00000374690	NM_000044.3	268	atG/atT																																																																															
ATRX	546	MSKCC	GRCh37	X	76937357	76937357	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	179	160	0	ENST00000373344.5:c.3391A>G	p.Arg1131Gly	p.R1131G	ENST00000373344	NM_000489.3	1131	Aga/Gga																																																																															
BTK	695	MSKCC	GRCh37	X	100615637	100615637	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	310	292	0	ENST00000308731.7:c.695A>G	p.Asp232Gly	p.D232G	ENST00000308731	NM_000061.2	232	gAt/gGt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81819769	81819769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	284	593	1	ENST00000359376.3:c.175G>A	p.Asp59Asn	p.D59N	ENST00000359376	NM_002661.3	59	Gac/Aac																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	32	370	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	92	644	2	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	21	351	1	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385177	41385177	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201332786		P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	186	701	0	ENST00000373198.4:c.784G>A	p.Val262Ile	p.V262I	ENST00000373198	NM_133170.3	262	Gtc/Atc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	87	712	1	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	78	394	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	83	900	1	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280109	66280109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	22	336	0	ENST00000273854.3:c.1580C>T	p.Ala527Val	p.A527V	ENST00000273854	NM_004439.5	527	gCa/gTa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532517	63532517	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	109	836	2	ENST00000307078.5:c.2062del	p.Leu688Ter	p.L688*	ENST00000307078	NM_004655.3	688	Ctg/tg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047906	180047906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	134	920	0	ENST00000261937.6:c.2269G>A	p.Val757Ile	p.V757I	ENST00000261937	NM_182925.4	757	Gtc/Atc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882049	36882050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs780753361		P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	132	882	2	ENST00000358127.4:c.963dup	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	-/C																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	45	513	0	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	33	413	3	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	26	58	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262139	10262139	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	127	783	2	ENST00000340748.4:c.2152del	p.Met718CysfsTer59	p.M718Cfs*59	ENST00000340748		718	Atg/tg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467434	66467434	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369606981		P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	37	268	0	ENST00000273854.3:c.835G>A	p.Glu279Lys	p.E279K	ENST00000273854	NM_004439.5	279	Gaa/Aaa																																																																															
ATM	472	MSKCC	GRCh37	11	108114816	108114817	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	67	503	0	ENST00000278616.4:c.640dup	p.Ser214PhefsTer40	p.S214Ffs*40	ENST00000278616	NM_000051.3	211	-/T																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076932	41076932	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	42	550	0	ENST00000373198.4:c.1488del	p.Phe498LeufsTer103	p.F498Lfs*103	ENST00000373198	NM_133170.3	496	ggG/gg																																																																															
RAC1	5879	MSKCC	GRCh37	7	6441974	6441974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	23	673	0	ENST00000356142.4:c.533C>T	p.Ala178Val	p.A178V	ENST00000356142	NM_018890.3	178	gCg/gTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905061	50905061	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	89	707	2	ENST00000440232.2:c.347del	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	115	Ccc/cc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911288	29911288	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	27	534	0	ENST00000376809.5:c.587T>C	p.Leu196Pro	p.L196P	ENST00000376809	NM_002116.7	196	cTg/cCg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937480	32937480	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	59	610	0	ENST00000380152.3:c.8145del	p.Val2716TrpfsTer17	p.V2716Wfs*17	ENST00000380152		2714	cAa/ca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534472	187534473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs749145480		P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	59	370	0	ENST00000441802.2:c.9253dup	p.Leu3085ProfsTer2	p.L3085Pfs*2	ENST00000441802	NM_005245.3	3085	ctt/cCtt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346792	89346792	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765013102		P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	62	465	2	ENST00000301030.4:c.6158C>T	p.Ala2053Val	p.A2053V	ENST00000301030	NM_001256183.1	2053	gCg/gTg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324917	31324917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	187	790	0	ENST00000412585.2:c.19del	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000412585	NM_005514.6	7	Cga/ga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	74	898	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874092	151874093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	64	587	0	ENST00000262189.6:c.8445dup	p.Ser2816IlefsTer6	p.S2816Ifs*6	ENST00000262189	NM_170606.2	2815	-/A																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231239	98231239	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs570441437		P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	139	739	0	ENST00000331920.6:c.2044C>T	p.Arg682Cys	p.R682C	ENST00000331920	NM_000264.3	682	Cgc/Tgc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332620	153332620	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1190157909		P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	45	466	0	ENST00000281708.4:c.336T>G	p.Asp112Glu	p.D112E	ENST00000281708	NM_033632.3	112	gaT/gaG																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324132	31324132	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41561215		P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	31	502	3	ENST00000412585.2:c.431G>A	p.Gly144Asp	p.G144D	ENST00000412585	NM_005514.6	144	gGc/gAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845684	151845684	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	80	577	0	ENST00000262189.6:c.13328A>G	p.Gln4443Arg	p.Q4443R	ENST00000262189	NM_170606.2	4443	cAg/cGg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862826	9862826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	67	640	0	ENST00000330684.3:c.2477C>T	p.Ala826Val	p.A826V	ENST00000330684	NM_001134407.1	826	gCc/gTc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885938	111885939	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs751076276		P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	42	609	0	ENST00000341259.2:c.1566dup	p.Glu523ArgfsTer23	p.E523Rfs*23	ENST00000341259	NM_005475.2	520	-/C																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145736926	145736926	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs779070043		P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	115	812	0	ENST00000428558.2:c.3515A>G	p.Tyr1172Cys	p.Y1172C	ENST00000428558	NM_004260.3	1172	tAc/tGc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246078881	246078881	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	100	618	0	ENST00000388985.4:c.764A>G	p.Asp255Gly	p.D255G	ENST00000388985		255	gAc/gGc																																																																															
BCL6	604	MSKCC	GRCh37	3	187447236	187447236	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	84	765	2	ENST00000232014.4:c.957del	p.Asn320MetfsTer4	p.N320Mfs*4	ENST00000232014	NM_001130845.1	319	ccC/cc																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117690357	117690357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	75	531	1	ENST00000369458.3:c.772G>A	p.Ala258Thr	p.A258T	ENST00000369458	NM_024626.3	258	Gct/Act																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800525	32800525	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs865861257		P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	54	944	0	ENST00000374899.4:c.1022C>T	p.Thr341Ile	p.T341I	ENST00000374899	NM_018833.2	341	aCc/aTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274213	10274213	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1302734897		P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	49	447	0	ENST00000330684.3:c.56G>A	p.Arg19His	p.R19H	ENST00000330684	NM_001134407.1	19	cGc/cAc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661509	227661509	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs865937681		P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	46	730	0	ENST00000305123.5:c.1946C>T	p.Pro649Leu	p.P649L	ENST00000305123	NM_005544.2	649	cCc/cTc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11182121	11182121	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	49	742	0	ENST00000361445.4:c.6725A>G	p.His2242Arg	p.H2242R	ENST00000361445	NM_004958.3	2242	cAc/cGc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933687	36933687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	114	943	0	ENST00000361632.4:c.1712A>G	p.Asn571Ser	p.N571S	ENST00000361632		571	aAc/aGc																																																																															
MPL	4352	MSKCC	GRCh37	1	43812478	43812478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	78	537	0	ENST00000372470.3:c.1181C>T	p.Pro394Leu	p.P394L	ENST00000372470	NM_005373.2	394	cCa/cTa																																																																															
BCL10	8915	MSKCC	GRCh37	1	85736412	85736412	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	52	411	0	ENST00000370580.1:c.235C>A	p.Leu79Met	p.L79M	ENST00000370580	NM_003921.4	79	Ctg/Atg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120493347	120493347	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	80	498	0	ENST00000256646.2:c.2479G>A	p.Gly827Ser	p.G827S	ENST00000256646	NM_024408.3	827	Ggc/Agc																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551782	150551782	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	22	88	0	ENST00000369026.2:c.225G>C	p.Arg75Ser	p.R75S	ENST00000369026	NM_021960.4	75	agG/agC																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100634	8100634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	120	807	0	ENST00000346208.3:c.608G>A	p.Gly203Asp	p.G203D	ENST00000346208		203	gGc/gAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710570	114710570	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	100	523	0	ENST00000543371.1:c.55A>T	p.Ile19Phe	p.I19F	ENST00000543371	NM_001198531.1	19	Att/Ttt																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123256185	123256185	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	71	533	0	ENST00000358487.5:c.1724A>G	p.Tyr575Cys	p.Y575C	ENST00000358487	NM_000141.4	575	tAc/tGc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427342	427342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	40	632	0	ENST00000399788.2:c.2827G>T	p.Ala943Ser	p.A943S	ENST00000399788	NM_001042603.1	943	Gct/Tct																																																																															
POLE	5426	MSKCC	GRCh37	12	133209007	133209007	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs952583197		P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	105	677	0	ENST00000320574.5:c.6224C>T	p.Thr2075Ile	p.T2075I	ENST00000320574	NM_006231.2	2075	aCa/aTa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515133	103515133	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs778300706		P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	31	285	0	ENST00000355739.4:c.1634A>G	p.Gln545Arg	p.Q545R	ENST00000355739	NM_000123.3	545	cAg/cGg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830493	72830493	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	90	615	0	ENST00000268489.5:c.6088T>C	p.Tyr2030His	p.Y2030H	ENST00000268489	NM_006885.3	2030	Tac/Cac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830531	72830531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	35	630	0	ENST00000268489.5:c.6050G>A	p.Arg2017Lys	p.R2017K	ENST00000268489	NM_006885.3	2017	aGg/aAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347385	89347386	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	153	794	0	ENST00000301030.4:c.5564_5565del	p.Tyr1855TrpfsTer94	p.Y1855Wfs*94	ENST00000301030	NM_001256183.1	1855	tAT/t																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119686	70119686	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	88	703	0	ENST00000245479.2:c.688C>T	p.Gln230Ter	p.Q230*	ENST00000245479	NM_000346.3	230	Caa/Taa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39584376	39584376	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	40	346	0	ENST00000262039.4:c.1041G>C	p.Gln347His	p.Q347H	ENST00000262039	NM_002647.2	347	caG/caC																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372111	45372111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	64	547	0	ENST00000262160.6:c.1058G>A	p.Ser353Asn	p.S353N	ENST00000262160	NM_005901.5	353	aGt/aAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222981	5222981	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772298342		P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	35	583	0	ENST00000357368.4:c.2822C>T	p.Ala941Val	p.A941V	ENST00000357368	NM_002850.3	941	gCc/gTc																																																																															
INSR	3643	MSKCC	GRCh37	19	7128967	7128967	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	47	306	0	ENST00000302850.5:c.2843-2A>T		p.X948_splice	ENST00000302850	NM_000208.2	948																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36212024	36212024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	160	1038	0	ENST00000222270.7:c.1775C>T	p.Thr592Ile	p.T592I	ENST00000222270	NM_014727.1	592	aCc/aTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221748	36221748	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	114	899	0	ENST00000222270.7:c.5417A>G	p.His1806Arg	p.H1806R	ENST00000222270	NM_014727.1	1806	cAc/cGc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50920477	50920477	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	89	643	0	ENST00000440232.2:c.3169C>A	p.Gln1057Lys	p.Q1057K	ENST00000440232	NM_002691.3	1057	Cag/Aag																																																																															
ALK	238	MSKCC	GRCh37	2	30143269	30143269	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	50	611	0	ENST00000389048.3:c.257A>G	p.Glu86Gly	p.E86G	ENST00000389048	NM_004304.4	86	gAg/gGg																																																																															
CASP8	841	MSKCC	GRCh37	2	202131286	202131286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	123	458	0	ENST00000358485.4:c.254G>A	p.Ser85Asn	p.S85N	ENST00000358485	NM_001080125.1	85	aGc/aAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285312	212285312	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	32	402	0	ENST00000342788.4:c.2989A>G	p.Ser997Gly	p.S997G	ENST00000342788	NM_005235.2	997	Agt/Ggt																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30309905	30309905	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	188	649	0	ENST00000307677.4:c.117A>C	p.Glu39Asp	p.E39D	ENST00000307677	NM_138578.1	39	gaA/gaC																																																																															
GNAS	2778	MSKCC	GRCh37	20	57474027	57474027	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	31	273	0	ENST00000371085.3:c.244A>G	p.Ser82Gly	p.S82G	ENST00000371085	NM_000516.4	82	Agc/Ggc																																																																															
MITF	4286	MSKCC	GRCh37	3	69928401	69928401	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	68	512	0	ENST00000352241.4:c.221G>T	p.Arg74Met	p.R74M	ENST00000352241	NM_198159.2	74	aGg/aTg																																																																															
ATR	545	MSKCC	GRCh37	3	142215312	142215312	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1174152895		P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	59	441	0	ENST00000350721.4:c.5789T>C	p.Val1930Ala	p.V1930A	ENST00000350721	NM_001184.3	1930	gTa/gCa																																																																															
BCL6	604	MSKCC	GRCh37	3	187447631	187447631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	66	720	0	ENST00000232014.4:c.562C>A	p.Leu188Met	p.L188M	ENST00000232014	NM_001130845.1	188	Ctg/Atg																																																																															
TP63	8626	MSKCC	GRCh37	3	189585628	189585628	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	19	407	0	ENST00000264731.3:c.889A>G	p.Thr297Ala	p.T297A	ENST00000264731	NM_003722.4	297	Act/Gct																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1978211	1978211	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	45	762	0	ENST00000382895.3:c.3631A>G	p.Thr1211Ala	p.T1211A	ENST00000382895	NM_133330.2	1211	Acc/Gcc																																																																															
KIT	3815	MSKCC	GRCh37	4	55561773	55561773	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	24	396	0	ENST00000288135.5:c.163A>G	p.Arg55Gly	p.R55G	ENST00000288135	NM_000222.2	55	Agg/Ggg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56174866	56174866	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	22	358	0	ENST00000399503.3:c.2025A>C	p.Lys675Asn	p.K675N	ENST00000399503	NM_005921.1	675	aaA/aaC																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576544	67576544	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	10	258	0	ENST00000274335.5:c.823T>A	p.Phe275Ile	p.F275I	ENST00000274335		275	Ttc/Atc																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158581	26158581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	35	607	0	ENST00000289316.2:c.184A>G	p.Ile62Val	p.I62V	ENST00000289316	NM_138720.2	62	Atc/Gtc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2977556	2977556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	85	661	0	ENST00000396946.4:c.1128G>T	p.Glu376Asp	p.E376D	ENST00000396946	NM_032415.4	376	gaG/gaT																																																																															
ETV1	2115	MSKCC	GRCh37	7	14027728	14027728	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	18	364	0	ENST00000405192.2:c.116T>A	p.Leu39Gln	p.L39Q	ENST00000405192	NM_001163147.1	39	cTg/cAg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133385	38133385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1254358650		P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	51	357	0	ENST00000317025.8:c.4088C>T	p.Pro1363Leu	p.P1363L	ENST00000317025	NM_023034.1	1363	cCg/cTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864739	68864739	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	88	526	0	ENST00000288368.4:c.110A>G	p.Asp37Gly	p.D37G	ENST00000288368	NM_024870.2	37	gAc/gGc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020405	69020405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	51	553	0	ENST00000288368.4:c.2777C>T	p.Ser926Phe	p.S926F	ENST00000288368	NM_024870.2	926	tCc/tTc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5081806	5081806	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747381013		P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	14	293	1	ENST00000381652.3:c.2516G>A	p.Arg839Gln	p.R839Q	ENST00000381652	NM_004972.3	839	cGg/cAg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139815622	139815622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	85	689	0	ENST00000247668.2:c.1093C>T	p.Arg365Cys	p.R365C	ENST00000247668	NM_021138.3	365	Cgc/Tgc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675859	30675861	+	missense_variant	Missense_Mutation	ONP	TCT	TCT	CCA			P-0058159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	67	799	1	ENST00000376406.3:c.2495_2497delinsTGG	p.Glu832_Arg833delinsValGly	p.E832_R833delinsVG	ENST00000376406	NM_014641.2	832	gAGAga/gTGGga																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0058301-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			361	73	437	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
RB1	5925	MSKCC	GRCh37	13	49037966	49037966	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058301-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			132	37	296	0	ENST00000267163.4:c.2206C>T	p.Gln736Ter	p.Q736*	ENST00000267163	NM_000321.2	736	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0058301-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	111	573	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																																																															
AKT1	207	MSKCC	GRCh37	14	105239414	105239414	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781749630		P-0058301-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			569	87	751	0	ENST00000349310.3:c.973G>A	p.Asp325Asn	p.D325N	ENST00000349310	NM_001014432.1	325	Gac/Aac																																																																															
MGA	23269	MSKCC	GRCh37	15	42059116	42059116	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058301-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			441	28	586	0	ENST00000219905.7:c.8836G>C	p.Asp2946His	p.D2946H	ENST00000219905	NM_001164273.1	2946	Gat/Cat																																																																															
TSC2	7249	MSKCC	GRCh37	16	2114403	2114403	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs45457694		P-0058301-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			479	33	625	1	ENST00000219476.3:c.1574A>G	p.Asn525Ser	p.N525S	ENST00000219476	NM_000548.3	525	aAc/aGc																																																																															
NF1	4763	MSKCC	GRCh37	17	29559090	29559090	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0058301-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			82	22	67	0	ENST00000358273.4:c.3198-1G>C		p.X1066_splice	ENST00000358273	NM_001042492.2	1066																																																																																
AXIN2	8313	MSKCC	GRCh37	17	63532516	63532516	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058301-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			505	96	633	0	ENST00000307078.5:c.2063T>A	p.Leu688Gln	p.L688Q	ENST00000307078	NM_004655.3	688	cTg/cAg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39550304	39550304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058301-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			270	74	469	0	ENST00000262039.4:c.415G>T	p.Gly139Trp	p.G139W	ENST00000262039	NM_002647.2	139	Ggg/Tgg																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631862	90631862	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	74	794	1	ENST00000330062.3:c.491G>A	p.Trp164Ter	p.W164*	ENST00000330062	NM_002168.2	164	tGg/tAg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861149	57861149	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774058977		P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	67	588	0	ENST00000228682.2:c.946G>A	p.Glu316Lys	p.E316K	ENST00000228682	NM_005269.2	316	Gaa/Aaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864648	68864648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	27	227	0	ENST00000288368.4:c.19G>A	p.Gly7Arg	p.G7R	ENST00000288368	NM_024870.2	7	Gga/Aga																																																																															
NF1	4763	MSKCC	GRCh37	17	29556250	29556250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199474739		P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	32	411	1	ENST00000358273.4:c.2617C>T	p.Arg873Cys	p.R873C	ENST00000358273	NM_001042492.2	873	Cgt/Tgt																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2489247	2489247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	85	901	0	ENST00000355716.4:c.152C>T	p.Ser51Phe	p.S51F	ENST00000355716	NM_003820.2	51	tCc/tTc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130520	29130520	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141568342		P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	41	580	0	ENST00000328354.6:c.190G>A	p.Glu64Lys	p.E64K	ENST00000328354	NM_007194.3	64	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261320	16261320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	85	729	0	ENST00000375759.3:c.8585C>T	p.Thr2862Ile	p.T2862I	ENST00000375759	NM_015001.2	2862	aCa/aTa																																																																															
CDC42	998	MSKCC	GRCh37	1	22408269	22408269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	35	349	0	ENST00000344548.3:c.160G>A	p.Gly54Arg	p.G54R	ENST00000344548	NM_001039802.1	54	Gga/Aga																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366674	40366674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	54	553	0	ENST00000397332.2:c.523C>T	p.Pro175Ser	p.P175S	ENST00000397332	NM_001033082.2	175	Ccc/Tcc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946427	71946428	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	76	842	0	ENST00000298229.2:c.2591_2592delinsAT	p.Gly864Asp	p.G864D	ENST00000298229	NM_001567.3	864	gGC/gAT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426051	49426051	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774023846		P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	82	1009	1	ENST00000301067.7:c.12437G>A	p.Gly4146Glu	p.G4146E	ENST00000301067	NM_003482.3	4146	gGg/gAg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986617	36986617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	30	300	0	ENST00000354822.5:c.1072C>T	p.Pro358Ser	p.P358S	ENST00000354822	NM_001079668.2	358	Ccg/Tcg																																																																															
MGA	23269	MSKCC	GRCh37	15	41989174	41989174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	59	538	0	ENST00000219905.7:c.1966G>A	p.Asp656Asn	p.D656N	ENST00000219905	NM_001164273.1	656	Gat/Aat																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43739627	43739627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	50	389	0	ENST00000382044.4:c.2773G>A	p.Gly925Ser	p.G925S	ENST00000382044	NM_001141980.1	925	Ggt/Agt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2114289	2114289	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	153	858	0	ENST00000219476.3:c.1460C>G	p.Ser487Ter	p.S487*	ENST00000219476	NM_000548.3	487	tCa/tGa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829938	72829938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	72	702	0	ENST00000268489.5:c.6643C>T	p.Pro2215Ser	p.P2215S	ENST00000268489	NM_006885.3	2215	Cct/Tct																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81891932	81891932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	63	536	0	ENST00000359376.3:c.402G>A	p.Met134Ile	p.M134I	ENST00000359376	NM_002661.3	134	atG/atA																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627849	14627849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	99	866	1	ENST00000254322.2:c.221G>A	p.Gly74Glu	p.G74E	ENST00000254322	NM_006145.1	74	gGg/gAg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299817	15299817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	70	942	0	ENST00000263388.2:c.1361C>T	p.Thr454Ile	p.T454I	ENST00000263388	NM_000435.2	454	aCc/aTc																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792363	33792363	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	153	895	0	ENST00000498907.2:c.958G>T	p.Asp320Tyr	p.D320Y	ENST00000498907	NM_004364.3	320	Gac/Tac																																																																															
RRAS	6237	MSKCC	GRCh37	19	50143298	50143298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	17	150	0	ENST00000246792.3:c.58G>A	p.Gly20Arg	p.G20R	ENST00000246792	NM_006270.3	20	Ggg/Agg																																																																															
ALK	238	MSKCC	GRCh37	2	29451857	29451857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	62	646	1	ENST00000389048.3:c.2708G>A	p.Gly903Glu	p.G903E	ENST00000389048	NM_004304.4	903	gGa/gAa																																																																															
ALK	238	MSKCC	GRCh37	2	29451870	29451870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	66	680	0	ENST00000389048.3:c.2695G>A	p.Gly899Ser	p.G899S	ENST00000389048	NM_004304.4	899	Ggt/Agt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37053318	37053318	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs63750012		P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	38	326	0	ENST00000231790.2:c.553G>A	p.Val185Ile	p.V185I	ENST00000231790	NM_000249.3	185	Gta/Ata																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437599	52437599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	70	844	0	ENST00000460680.1:c.1562G>A	p.Ser521Asn	p.S521N	ENST00000460680	NM_004656.3	521	aGc/aAc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52692301	52692301	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs542464402		P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	50	415	0	ENST00000394830.3:c.559G>A	p.Glu187Lys	p.E187K	ENST00000394830	NM_018313.4	187	Gag/Aag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71101744	71101744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	37	242	0	ENST00000318789.4:c.454G>A	p.Glu152Lys	p.E152K	ENST00000318789	NM_032682.5	152	Gaa/Aaa																																																																															
ATR	545	MSKCC	GRCh37	3	142279253	142279253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	40	443	0	ENST00000350721.4:c.1393G>A	p.Ala465Thr	p.A465T	ENST00000350721	NM_001184.3	465	Gca/Aca																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430516	181430516	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	49	566	0	ENST00000325404.1:c.368A>G	p.Asp123Gly	p.D123G	ENST00000325404	NM_003106.3	123	gAt/gGt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250888	153250888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	24	297	0	ENST00000281708.4:c.1172G>A	p.Gly391Asp	p.G391D	ENST00000281708	NM_033632.3	391	gGt/gAt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564492	86564492	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200002693		P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	82	774	0	ENST00000274376.6:c.224G>A	p.Gly75Glu	p.G75E	ENST00000274376	NM_002890.2	75	gGg/gAg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163410	32163410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	81	803	1	ENST00000375023.3:c.5816G>A	p.Gly1939Glu	p.G1939E	ENST00000375023	NM_004557.3	1939	gGg/gAg																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43742088	43742088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	94	765	1	ENST00000523873.1:c.77C>T	p.Ala26Val	p.A26V	ENST00000523873		26	gCt/gTt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391173	139391173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	85	1167	0	ENST00000277541.6:c.7018C>T	p.Pro2340Ser	p.P2340S	ENST00000277541	NM_017617.3	2340	Ccc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0058525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	30	337	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207077	1207077	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	114	951	2	ENST00000326873.7:c.169del	p.Glu57LysfsTer7	p.E57Kfs*7	ENST00000326873	NM_000455.4	55	ctG/ct																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600326	10600326	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0058525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	88	661	0	ENST00000171111.5:c.1529C>T	p.Ala510Val	p.A510V	ENST00000171111	NM_203500.1	510	gCa/gTa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141533	11141534	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0058525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	77	783	0	ENST00000344626.4:c.3512_3513del	p.Val1171AspfsTer4	p.V1171Dfs*4	ENST00000344626	NM_003072.3	1170	acTGtg/actg																																																																															
CBL	867	MSKCC	GRCh37	11	119170229	119170229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	32	243	0	ENST00000264033.4:c.2459C>T	p.Pro820Leu	p.P820L	ENST00000264033	NM_005188.3	820	cCc/cTc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69031666	69031666	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0058525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	41	303	0	ENST00000288368.4:c.3422-1G>C		p.X1141_splice	ENST00000288368	NM_024870.2	1141																																																																																
PREX2	80243	MSKCC	GRCh37	8	69058536	69058536	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61753703		P-0058564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	76	266	0	ENST00000288368.4:c.4180C>T	p.Arg1394Trp	p.R1394W	ENST00000288368	NM_024870.2	1394	Cgg/Tgg																																																																															
MYC	4609	MSKCC	GRCh37	8	128753146	128753146	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761932135		P-0058564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	362	394	0	ENST00000377970.2:c.1307G>A	p.Arg436Gln	p.R436Q	ENST00000377970	NM_002467.4	436	cGg/cAg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390071	89390071	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	78	273	0	ENST00000336596.2:c.820C>G	p.Arg274Gly	p.R274G	ENST00000336596	NM_005233.5	274	Cga/Gga																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119634983	119634983	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	74	313	0	ENST00000316626.5:c.516C>G	p.Ile172Met	p.I172M	ENST00000316626		172	atC/atG																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177839	56177839	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs778754223		P-0058564-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	85	460	0	ENST00000399503.3:c.2812C>A	p.Pro938Thr	p.P938T	ENST00000399503	NM_005921.1	938	Cct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs764146326		P-0058899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	69	378	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929073	44929073	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0058899-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	55	316	0	ENST00000377967.4:c.2174del	p.Leu725Ter	p.L725*	ENST00000377967	NM_021140.2	725	Ttg/tg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0058978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	41	351	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0058978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	56	281	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016615	12016615	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	23	431	0	ENST00000353533.5:c.751A>C	p.Ser251Arg	p.S251R	ENST00000353533	NM_003010.3	251	Agt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575230	48575230	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0058978-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	34	284	0	ENST00000342988.3:c.424+1del		p.D142fs	ENST00000342988	NM_005359.5	142	Gat/at																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0059019-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			378	33	466	2	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440904	56440904	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1458799446		P-0059019-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			502	26	541	0	ENST00000407977.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000407977		145	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492904	56492905	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0059019-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			571	42	503	0	ENST00000407977.2:c.33_34dup	p.Leu12ProfsTer7	p.L12Pfs*7	ENST00000407977		12	ctc/cCCtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0059019-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	50	345	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038875	12038875	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0059019-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			386	38	500	0	ENST00000396373.4:c.1168A>C	p.Thr390Pro	p.T390P	ENST00000396373	NM_001987.4	390	Acc/Ccc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039683	47039687	+	frameshift_variant	Frame_Shift_Del	DEL	GTTGA	GTTGA	-			P-0059019-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	33	267	0	ENST00000329236.7:c.904_908del	p.Glu302CysfsTer5	p.E302Cfs*5	ENST00000329236	NM_001204466.1	301	GTTGAg/g																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0060469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			416	351	493	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096052	178096052	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			642	48	600	0	ENST00000397062.3:c.1279G>C	p.Glu427Gln	p.E427Q	ENST00000397062	NM_006164.4	427	Gag/Cag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18974395	18974395	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1322079562		P-0060469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			273	179	537	0	ENST00000262803.5:c.2749C>T	p.Arg917Trp	p.R917W	ENST00000262803	NM_002911.3	917	Cgg/Tgg																																																																															
RB1	5925	MSKCC	GRCh37	13	48955382	48955382	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0060469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			139	172	326	0	ENST00000267163.4:c.1499del		p.X500_splice	ENST00000267163	NM_000321.2	500																																																																																
HIST1H3B	8358	MSKCC	GRCh37	6	26032006	26032006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			635	125	760	0	ENST00000244661.2:c.283G>A	p.Glu95Lys	p.E95K	ENST00000244661	NM_003537.3	95	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578515	7578516	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0060469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			273	287	665	0	ENST00000269305.4:c.414dup	p.Lys139GlnfsTer10	p.K139Qfs*10	ENST00000269305	NM_001126112.2	138	-/C																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733629	85733629	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			321	60	486	0	ENST00000370580.1:c.383G>C	p.Gly128Ala	p.G128A	ENST00000370580	NM_003921.4	128	gGa/gCa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175957447	175957447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			534	121	441	0	ENST00000367669.3:c.1949C>T	p.Ser650Phe	p.S650F	ENST00000367669	NM_022457.5	650	tCc/tTc																																																																															
MGA	23269	MSKCC	GRCh37	15	42046683	42046683	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			362	49	473	0	ENST00000219905.7:c.7057G>C	p.Glu2353Gln	p.E2353Q	ENST00000219905	NM_001164273.1	2353	Gag/Cag																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349157	11349157	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0060469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			603	39	617	0	ENST00000332029.2:c.179C>A	p.Ser60Ter	p.S60*	ENST00000332029	NM_003745.1	60	tCg/tAg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56174889	56174889	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0060469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			189	343	459	0	ENST00000399503.3:c.2049del	p.Val684Ter	p.V684*	ENST00000399503	NM_005921.1	683	gTt/gt																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250796	26250796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			641	94	668	0	ENST00000446824.2:c.38G>T	p.Gly13Val	p.G13V	ENST00000446824	NM_021018.2	13	gGc/gTc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117686821	117686821	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			317	101	436	0	ENST00000368508.3:c.2896C>G	p.Gln966Glu	p.Q966E	ENST00000368508	NM_002944.2	966	Caa/Gaa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162622174	162622174	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0060469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			410	89	593	0	ENST00000366898.1:c.523A>T	p.Thr175Ser	p.T175S	ENST00000366898	NM_004562.2	175	Acc/Tcc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864897	117864897	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			914	180	426	0	ENST00000297338.2:c.1212G>T	p.Arg404Ser	p.R404S	ENST00000297338	NM_006265.2	404	agG/agT																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968167	68968167	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	30	384	0	ENST00000288368.4:c.1196G>C	p.Arg399Pro	p.R399P	ENST00000288368	NM_024870.2	399	cGa/cCa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11316197	11316197	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0061492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	48	528	0	ENST00000361445.4:c.557A>C	p.Gln186Pro	p.Q186P	ENST00000361445	NM_004958.3	186	cAa/cCa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671641	67671641	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	64	534	0	ENST00000264010.4:c.2050A>T	p.Ile684Phe	p.I684F	ENST00000264010	NM_006565.3	684	Att/Ttt																																																																															
KDR	3791	MSKCC	GRCh37	4	55971082	55971082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061492-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	36	473	0	ENST00000263923.4:c.1715C>T	p.Thr572Ile	p.T572I	ENST00000263923	NM_002253.2	572	aCt/aTt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78923339	78923339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1441841406		P-0061625-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			441	93	499	0	ENST00000306801.3:c.3362C>T	p.Thr1121Met	p.T1121M	ENST00000306801	NM_020761.2	1121	aCg/aTg																																																																															
RB1	5925	MSKCC	GRCh37	13	48923135	48923135	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061625-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			105	30	257	0	ENST00000267163.4:c.583T>C	p.Trp195Arg	p.W195R	ENST00000267163	NM_000321.2	195	Tgg/Cgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993466	72993466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061625-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			421	28	614	0	ENST00000268489.5:c.579G>T	p.Gln193His	p.Q193H	ENST00000268489	NM_006885.3	193	caG/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786202962		P-0061756-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			453	238	737	1	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579415	7579415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061811-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	186	647	0	ENST00000269305.4:c.272G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tGg/tAg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0061811-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			759	313	544	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741426	17741426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061811-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			565	140	521	0	ENST00000250003.3:c.97C>T	p.Pro33Ser	p.P33S	ENST00000250003	NM_002478.4	33	Ccg/Tcg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120510786	120510786	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061811-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			566	162	477	0	ENST00000256646.2:c.1178A>G	p.Asn393Ser	p.N393S	ENST00000256646	NM_024408.3	393	aAc/aGc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223598	36223598	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061811-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			791	234	746	0	ENST00000222270.7:c.6148A>T	p.Ser2050Cys	p.S2050C	ENST00000222270	NM_014727.1	2050	Agc/Tgc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054698	5054698	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061811-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			478	160	462	0	ENST00000381652.3:c.750G>C	p.Leu250Phe	p.L250F	ENST00000381652	NM_004972.3	250	ttG/ttC																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054711	5054711	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061811-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			454	158	451	0	ENST00000381652.3:c.763C>G	p.Leu255Val	p.L255V	ENST00000381652	NM_004972.3	255	Ctt/Gtt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412375	139412375	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1341448592		P-0061818-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			829	113	800	0	ENST00000277541.6:c.1270G>A	p.Glu424Lys	p.E424K	ENST00000277541	NM_017617.3	424	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0061818-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			581	204	797	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0061818-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			424	99	388	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573519	48573519	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0061818-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			463	88	605	0	ENST00000342988.3:c.105del	p.Phe35LeufsTer10	p.F35Lfs*10	ENST00000342988	NM_005359.5	35	Ttt/tt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974797	21974798	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0061818-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			483	361	821	0	ENST00000304494.5:c.29dup	p.Pro11AlafsTer4	p.P11Afs*4	ENST00000304494	NM_000077.4	10	gag/gaAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs780442292		P-0061836-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			434	128	612	0	ENST00000269305.4:c.401T>G	p.Phe134Cys	p.F134C	ENST00000269305	NM_001126112.2	134	tTt/tGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573430	48573430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061836-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			325	96	497	0	ENST00000342988.3:c.14C>G	p.Ser5Cys	p.S5C	ENST00000342988	NM_005359.5	5	tCt/tGt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265474	46265474	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061836-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			418	98	489	0	ENST00000371998.3:c.2344G>T	p.Asp782Tyr	p.D782Y	ENST00000371998		782	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0061836-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			259	41	413	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BCL10	8915	MSKCC	GRCh37	1	85736471	85736471	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061836-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			406	59	521	0	ENST00000370580.1:c.176C>G	p.Thr59Arg	p.T59R	ENST00000370580	NM_003921.4	59	aCa/aGa																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165707	118165707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061836-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			600	39	748	0	ENST00000369448.3:c.217G>A	p.Gly73Ser	p.G73S	ENST00000369448	NM_017709.3	73	Ggc/Agc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717666	89717703	+	frameshift_variant	Frame_Shift_Del	DEL	CCCACACGACGGGAAGACAAGTTCATGTACTTTGAGTT	CCCACACGACGGGAAGACAAGTTCATGTACTTTGAGTT	-			P-0061836-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			315	33	514	0	ENST00000371953.3:c.694_731del	p.Thr232SerfsTer8	p.T232Sfs*8	ENST00000371953	NM_000314.4	231	CCCACACGACGGGAAGACAAGTTCATGTACTTTGAGTTc/c																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349943	89349976	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGTTCCCACGGCTCCAGGCCCTTCCCAAAGTC	GCCGTTCCCACGGCTCCAGGCCCTTCCCAAAGTC	-			P-0061836-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			641	158	781	0	ENST00000301030.4:c.2974_3007del	p.Asp992ThrfsTer315	p.D992Tfs*315	ENST00000301030	NM_001256183.1	992	GACTTTGGGAAGGGCCTGGAGCCGTGGGAACGGCac/ac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435703	56435703	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061836-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			608	141	680	0	ENST00000407977.2:c.1434del	p.Val479TrpfsTer23	p.V479Wfs*23	ENST00000407977		478	tcT/tc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424826	47424826	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061836-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			583	98	693	1	ENST00000404338.3:c.2894A>T	p.Glu965Val	p.E965V	ENST00000404338	NM_004491.4	965	gAa/gTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944443	40944443	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0061836-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	89	616	0	ENST00000373198.4:c.2059T>G	p.Tyr687Asp	p.Y687D	ENST00000373198	NM_133170.3	687	Tac/Gac																																																																															
PPARG	5468	MSKCC	GRCh37	3	12475482	12475482	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061836-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	147	644	0	ENST00000287820.6:c.1356C>A	p.Asn452Lys	p.N452K	ENST00000287820	NM_015869.4	452	aaC/aaA																																																																															
RHEB	6009	MSKCC	GRCh37	7	151188073	151188073	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061836-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			326	82	415	0	ENST00000262187.5:c.80T>C	p.Val27Ala	p.V27A	ENST00000262187	NM_005614.3	27	gTt/gCt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741922	145741922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061836-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			605	166	740	0	ENST00000428558.2:c.581G>T	p.Cys194Phe	p.C194F	ENST00000428558	NM_004260.3	194	tGt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0061969-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			452	433	534	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188296	32188296	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs561687277		P-0061969-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			702	286	852	0	ENST00000375023.3:c.1045G>A	p.Gly349Ser	p.G349S	ENST00000375023	NM_004557.3	349	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576844	7577001	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCCTTGGTCTCCTCCACCGCTTC	ACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCCTTGGTCTCCTCCACCGCTTC	-			P-0061969-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			171	186	668	0	ENST00000269305.4:c.919+18_993+9del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
CIC	23152	MSKCC	GRCh37	19	42793506	42793506	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0061969-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			390	215	743	0	ENST00000575354.2:c.1308del	p.Ser436ArgfsTer36	p.S436Rfs*36	ENST00000575354	NM_015125.3	436	agT/ag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0061991-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1380	1735	595	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782620		P-0061991-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			390	502	599	0	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271368	18271368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061991-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1291	639	548	0	ENST00000222254.8:c.410G>A	p.Arg137Lys	p.R137K	ENST00000222254	NM_005027.3	137	aGg/aAg																																																																															
APC	324	MSKCC	GRCh37	5	112176863	112176863	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	123	555	0	ENST00000257430.4:c.5572C>T	p.Arg1858Ter	p.R1858*	ENST00000257430	NM_000038.5	1858	Cga/Tga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	422335	422335	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0062080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	121	501	0	ENST00000399788.2:c.2923G>T	p.Glu975Ter	p.E975*	ENST00000399788	NM_001042603.1	975	Gaa/Taa																																																																															
BTK	695	MSKCC	GRCh37	X	100608255	100608255	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	120	250	0	ENST00000308731.7:c.1835A>G	p.Gln612Arg	p.Q612R	ENST00000308731	NM_000061.2	612	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0062106-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	146	403	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0062106-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			111	24	117	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38964979	38964979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062106-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			277	48	345	0	ENST00000357387.3:c.1315C>T	p.Pro439Ser	p.P439S	ENST00000357387	NM_152756.3	439	Cct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0062107-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			357	191	639	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974762	21974762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062107-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			305	155	595	0	ENST00000304494.5:c.65G>C	p.Arg22Pro	p.R22P	ENST00000304494	NM_000077.4	22	cGg/cCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434378	49434378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062107-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			501	177	602	0	ENST00000301067.7:c.7175C>T	p.Pro2392Leu	p.P2392L	ENST00000301067	NM_003482.3	2392	cCt/cTt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914284	32914284	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0062107-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			102	68	396	0	ENST00000380152.3:c.5793del	p.Gln1931HisfsTer32	p.Q1931Hfs*32	ENST00000380152		1931	cAa/ca																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267343	198267343	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062107-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			457	128	427	0	ENST00000335508.6:c.2014G>T	p.Ala672Ser	p.A672S	ENST00000335508	NM_012433.2	672	Gct/Tct																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98221996	98221996	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062107-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			344	187	508	0	ENST00000331920.6:c.2773G>T	p.Ala925Ser	p.A925S	ENST00000331920	NM_000264.3	925	Gct/Tct																																																																															
PGR	5241	MSKCC	GRCh37	11	100912818	100912818	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062107-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			268	46	302	0	ENST00000325455.5:c.2504T>A	p.Leu835Gln	p.L835Q	ENST00000325455	NM_001202474.3	835	cTa/cAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424431	49424431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062107-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			422	156	505	0	ENST00000301067.7:c.13792G>A	p.Gly4598Arg	p.G4598R	ENST00000301067	NM_003482.3	4598	Ggg/Agg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557644	21557644	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062107-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			317	156	582	0	ENST00000382592.4:c.2201C>A	p.Ser734Tyr	p.S734Y	ENST00000382592	NM_014572.2	734	tCc/tAc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63965609	63965609	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062107-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			306	82	442	0	ENST00000295900.6:c.518C>A	p.Ser173Tyr	p.S173Y	ENST00000295900	NM_000333.3	173	tCc/tAc																																																																															
POT1	25913	MSKCC	GRCh37	7	124493153	124493153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062107-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			166	13	287	0	ENST00000357628.3:c.742C>T	p.Leu248Phe	p.L248F	ENST00000357628	NM_015450.2	248	Ctt/Ttt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70971006	70971006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062107-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			351	147	425	0	ENST00000276594.2:c.1255C>T	p.Leu419Phe	p.L419F	ENST00000276594	NM_024504.3	419	Ctc/Ttc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94910922	94910922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062107-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			287	30	294	0	ENST00000536441.1:c.1208G>T	p.Arg403Ile	p.R403I	ENST00000536441	NM_144665.3	403	aGa/aTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426425	49427203	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGAGGAGGGTTGGACCCAGGGCTCCAGGGCTAGAAAAGTGTTGAAGAGGCTTTGCTGGCATGCCAGGGCCAAGTGCCACTTGCTGCTGCTGTTGTTGCTGAGGAGACAGTAAAGTTCGACTCTGGTTTAAAAGGCCCATCTGCTGCTGTTGCTGCTGCTGTTGAAACTGCTGCTGTTGTTGTTGCTGTTGCTGTTGTAGCTGCTGTTGCTGCTGTTGAAGCTGTTGCTGCTGCTGTTGTTGAAGCTGCTGCTGCTGTTGCTGCTGTTGAAGCTGTTGCTGCTGAAGTTGCTGTTGCTGTTGTAGCTGCTGCTGCTGCTGCTGCTGAAGTTGCTGTTGCTGTTGCAGCTGCTGCTGCTGCTGAAGCTGCTGTAAAGAGCCCATGGGCTGAGCGCTCAGTTTGGGCTGCCCACTGTGTGACATCAGACTCTGCTGAAGATGGGACAGCCCTGCCATGGACCCTTGCTGTTGGTGCTGTTGTTGCTGCTGCTGCTGCTGGGCTGTGACCAGCCTGTGTCCCATAAGGCCCTGACCCTGCTGTGCCAGCTGGGGGGAACTGAGCACCCGGGACTGGGTCATAAGCACCTGTCTGTGAGGGCCCTGGGGGCCCAAAGCTCCAGGGTGCTGCTGCTGCAACACAGCCACCTGGGCAGGGCCCAGCATGCCCTGGGGCCCCTGGGGTGGTTGAGGGGACAGCTGCTGGACCAGGAGGCCTTGGTGGCTGCTGGGAGGCATAAGGCCCTGGGGCTTGGGACCCAGAGCTTGGTTTGTCTGTACTC	CAGGAGGAGGGTTGGACCCAGGGCTCCAGGGCTAGAAAAGTGTTGAAGAGGCTTTGCTGGCATGCCAGGGCCAAGTGCCACTTGCTGCTGCTGTTGTTGCTGAGGAGACAGTAAAGTTCGACTCTGGTTTAAAAGGCCCATCTGCTGCTGTTGCTGCTGCTGTTGAAACTGCTGCTGTTGTTGTTGCTGTTGCTGTTGTAGCTGCTGTTGCTGCTGTTGAAGCTGTTGCTGCTGCTGTTGTTGAAGCTGCTGCTGCTGTTGCTGCTGTTGAAGCTGTTGCTGCTGAAGTTGCTGTTGCTGTTGTAGCTGCTGCTGCTGCTGCTGCTGAAGTTGCTGTTGCTGTTGCAGCTGCTGCTGCTGCTGAAGCTGCTGTAAAGAGCCCATGGGCTGAGCGCTCAGTTTGGGCTGCCCACTGTGTGACATCAGACTCTGCTGAAGATGGGACAGCCCTGCCATGGACCCTTGCTGTTGGTGCTGTTGTTGCTGCTGCTGCTGCTGGGCTGTGACCAGCCTGTGTCCCATAAGGCCCTGACCCTGCTGTGCCAGCTGGGGGGAACTGAGCACCCGGGACTGGGTCATAAGCACCTGTCTGTGAGGGCCCTGGGGGCCCAAAGCTCCAGGGTGCTGCTGCTGCAACACAGCCACCTGGGCAGGGCCCAGCATGCCCTGGGGCCCCTGGGGTGGTTGAGGGGACAGCTGCTGGACCAGGAGGCCTTGGTGGCTGCTGGGAGGCATAAGGCCCTGGGGCTTGGGACCCAGAGCTTGGTTTGTCTGTACTC	-			P-0062107-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			544	128	631	0	ENST00000301067.7:c.11285_12063del	p.Gly3762AspfsTer18	p.G3762Dfs*18	ENST00000301067	NM_003482.3	3762	gGAGTACAGACAAACCAAGCTCTGGGTCCCAAGCCCCAGGGCCTTATGCCTCCCAGCAGCCACCAAGGCCTCCTGGTCCAGCAGCTGTCCCCTCAACCACCCCAGGGGCCCCAGGGCATGCTGGGCCCTGCCCAGGTGGCTGTGTTGCAGCAGCAGCACCCTGGAGCTTTGGGCCCCCAGGGCCCTCACAGACAGGTGCTTATGACCCAGTCCCGGGTGCTCAGTTCCCCCCAGCTGGCACAGCAGGGTCAGGGCCTTATGGGACACAGGCTGGTCACAGCCCAGCAGCAGCAGCAGCAACAACAGCACCAACAGCAAGGGTCCATGGCAGGGCTGTCCCATCTTCAGCAGAGTCTGATGTCACACAGTGGGCAGCCCAAACTGAGCGCTCAGCCCATGGGCTCTTTACAGCAGCTTCAGCAGCAGCAGCAGCTGCAACAGCAACAGCAACTTCAGCAGCAGCAGCAGCAGCAGCTACAACAGCAACAGCAACTTCAGCAGCAACAGCTTCAACAGCAGCAACAGCAGCAGCAGCTTCAACAACAGCAGCAGCAACAGCTTCAACAGCAGCAACAGCAGCTACAACAGCAACAGCAACAACAACAGCAGCAGTTTCAACAGCAGCAGCAACAGCAGCAGATGGGCCTTTTAAACCAGAGTCGAACTTTACTGTCTCCTCAGCAACAACAGCAGCAGCAAGTGGCACTTGGCCCTGGCATGCCAGCAAAGCCTCTTCAACACTTTTCTAGCCCTGGAGCCCTGGGTCCAACCCTCCTCCTG/g																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432548	49432560	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCCTGGCAGAC	GGGCCTGGCAGAC	-			P-0062107-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			599	47	581	0	ENST00000301067.7:c.8579_8591del	p.Arg2860LeufsTer46	p.R2860Lfs*46	ENST00000301067	NM_003482.3	2860	cGTCTGCCAGGCCCt/ct																																																																															
ALK	238	MSKCC	GRCh37	2	29917805	29917805	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062107-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			459	109	484	0	ENST00000389048.3:c.863G>C	p.Trp288Ser	p.W288S	ENST00000389048	NM_004304.4	288	tGg/tCg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390947	89390947	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062107-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			373	33	390	0	ENST00000336596.2:c.1013A>C	p.Glu338Ala	p.E338A	ENST00000336596	NM_005233.5	338	gAg/gCg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670435	134670435	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0062107-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			595	137	459	0	ENST00000398015.3:c.346G>T	p.Glu116Ter	p.E116*	ENST00000398015	NM_004441.4	116	Gag/Tag																																																																															
MED12	9968	MSKCC	GRCh37	X	70341641	70341641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062107-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			282	38	263	0	ENST00000374080.3:c.1076T>C	p.Val359Ala	p.V359A	ENST00000374080		359	gTt/gCt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981456	201981471	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTTCCTTCCTTGTCAG	CTTCCTTCCTTGTCAG	-			P-0062107-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			400	28	492	0	ENST00000359651.3:c.386-11_390del		p.X129_splice	ENST00000359651		129																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0062115-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			560	426	494	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0062115-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			377	246	505	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685287	89685287	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs398123316		P-0062115-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			247	131	289	0	ENST00000371953.3:c.182A>T	p.His61Leu	p.H61L	ENST00000371953	NM_000314.4	61	cAt/cTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444927	49444927	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1439134461		P-0062115-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			819	174	706	0	ENST00000301067.7:c.2539G>A	p.Glu847Lys	p.E847K	ENST00000301067	NM_003482.3	847	Gag/Aag																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31386336	31386336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062115-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1075	158	685	0	ENST00000328111.2:c.1561C>T	p.Pro521Ser	p.P521S	ENST00000328111	NM_006892.3	521	Ccc/Tcc																																																																															
STK19	8859	MSKCC	GRCh37	6	31940271	31940271	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062115-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1085	206	607	0	ENST00000375331.2:c.413C>G	p.Pro138Arg	p.P138R	ENST00000375331	NM_004197.1	138	cCt/cGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0062125-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			416	207	728	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0062125-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			357	221	531	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448310	56448310	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062125-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	231	628	0	ENST00000407977.2:c.337C>T	p.Arg113Ter	p.R113*	ENST00000407977		113	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0062125-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			445	178	633	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49435095	49435095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062125-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			323	134	538	0	ENST00000301067.7:c.6458C>T	p.Pro2153Leu	p.P2153L	ENST00000301067	NM_003482.3	2153	cCt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0062125-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			383	176	415	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300869	137300869	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062125-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			729	47	643	0	ENST00000481739.1:c.514C>T	p.Arg172Cys	p.R172C	ENST00000481739	NM_002957.4	172	Cgc/Tgc																																																																															
MED12	9968	MSKCC	GRCh37	X	70338699	70338701	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	AGG	AGG	-			P-0062125-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			140	125	206	0	ENST00000374080.3:c.98_99+1del		p.KEdel	ENST00000374080		32	aAGGag/aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578441	7578441	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0062128-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			737	230	631	1	ENST00000269305.4:c.489C>A	p.Tyr163Ter	p.Y163*	ENST00000269305	NM_001126112.2	163	taC/taA																																																																															
STK11	6794	MSKCC	GRCh37	19	1220371	1220371	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0062128-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			643	141	532	1	ENST00000326873.7:c.465-1G>C		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66356416	66356416	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062128-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			590	95	427	3	ENST00000273854.3:c.1081C>A	p.Pro361Thr	p.P361T	ENST00000273854	NM_004439.5	361	Cct/Act																																																																															
BAP1	8314	MSKCC	GRCh37	3	52443866	52443866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062128-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			874	241	553	0	ENST00000460680.1:c.29G>A	p.Ser10Asn	p.S10N	ENST00000460680	NM_004656.3	10	aGc/aAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0062128-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			419	78	297	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50492503	50492503	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062128-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			599	127	446	0	ENST00000394963.4:c.1399A>T	p.Thr467Ser	p.T467S	ENST00000394963	NM_003076.4	467	Act/Tct																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39074259	39074259	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0062128-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			734	159	386	0	ENST00000357387.3:c.51del	p.Arg18GlyfsTer13	p.R18Gfs*13	ENST00000357387	NM_152756.3	17	ggG/gg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372229	55372229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062128-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1021	100	562	1	ENST00000297316.4:c.919G>A	p.Gly307Ser	p.G307S	ENST00000297316	NM_022454.3	307	Ggc/Agc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123227867	123227867	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0062128-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			356	79	275	0	ENST00000218089.9:c.3579-1G>T		p.X1193_splice	ENST00000218089	NM_001042749.1	1193																																																																																
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0062152-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	25	369	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0062164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	30	477	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0062164-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	13	345	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729094	66729099	+	inframe_deletion	In_Frame_Del	DEL	TGGAGA	TGGAGA	-			P-0062189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	207	523	0	ENST00000307102.5:c.303_308del	p.Glu102_Ile103del	p.E102_I103del	ENST00000307102	NM_002755.3	101	cTGGAGAtc/ctc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs28934576		P-0062189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	182	483	0	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt																																																																															
ATM	472	MSKCC	GRCh37	11	108216576	108216576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	56	382	0	ENST00000278616.4:c.8525C>T	p.Pro2842Leu	p.P2842L	ENST00000278616	NM_000051.3	2842	cCa/cTa																																																																															
MAX	4149	MSKCC	GRCh37	14	65560491	65560491	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	99	398	0	ENST00000358664.4:c.106A>G	p.Arg36Gly	p.R36G	ENST00000358664	NM_002382.4	36	Agg/Ggg																																																																															
APC	324	MSKCC	GRCh37	5	112178864	112178865	+	missense_variant	Missense_Mutation	DNP	CG	CG	GT			P-0062189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	89	459	0	ENST00000257430.4:c.7573_7574delinsGT	p.Arg2525Val	p.R2525V	ENST00000257430	NM_000038.5	2525	CGc/GTc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372409	55372409	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	71	620	0	ENST00000297316.4:c.1099C>G	p.Leu367Val	p.L367V	ENST00000297316	NM_022454.3	367	Ctg/Gtg																																																																															
ATRX	546	MSKCC	GRCh37	X	76939118	76939118	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062189-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	65	467	0	ENST00000373344.5:c.1630C>A	p.His544Asn	p.H544N	ENST00000373344	NM_000489.3	544	Cat/Aat																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519967		P-0062200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	129	431	0	ENST00000347630.2:c.398T>C	p.Phe133Ser	p.F133S	ENST00000347630	NM_001007230.1	133	tTc/tCc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914547	32914547	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0062200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	140	546	0	ENST00000380152.3:c.6056del	p.Asn2019ThrfsTer21	p.N2019Tfs*21	ENST00000380152		2019	Aac/ac																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732900	74732900	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	173	455	0	ENST00000359995.5:c.343T>A	p.Tyr115Asn	p.Y115N	ENST00000359995	NM_001195427.1	115	Tac/Aac																																																																															
PARK2	5071	MSKCC	GRCh37	6	161807864	161807864	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	118	468	0	ENST00000366898.1:c.1129T>A	p.Cys377Ser	p.C377S	ENST00000366898	NM_004562.2	377	Tgc/Agc																																																																															
HGF	3082	MSKCC	GRCh37	7	81392071	81392071	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0062200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	83	369	0	ENST00000222390.5:c.206A>T	p.Gln69Leu	p.Q69L	ENST00000222390	NM_000601.4	69	cAa/cTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151960122	151960139	+	inframe_deletion	In_Frame_Del	DEL	TGGTACTGATTTCATAAC	TGGTACTGATTTCATAAC	-			P-0062200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	17	297	0	ENST00000262189.6:c.1261_1278del	p.Val421_Pro426del	p.V421_P426del	ENST00000262189	NM_170606.2	421	GTTATGAAATCAGTACCA/-																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98224251	98224251	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	69	416	0	ENST00000331920.6:c.2590G>C	p.Glu864Gln	p.E864Q	ENST00000331920	NM_000264.3	864	Gaa/Caa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918292	44918292	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062200-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			67	60	142	0	ENST00000377967.4:c.917C>G	p.Ser306Cys	p.S306C	ENST00000377967	NM_021140.2	306	tCt/tGt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	341275	341275	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1219986773		P-0062239-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	175	332	0	ENST00000262320.3:c.2209C>T	p.Arg737Trp	p.R737W	ENST00000262320	NM_003502.3	737	Cgg/Tgg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274264	10274264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	40	418	0	ENST00000330684.3:c.5G>A	p.Gly2Asp	p.G2D	ENST00000330684	NM_001134407.1	2	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574035	7574035	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs867389695		P-0062240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	87	360	0	ENST00000269305.4:c.994-2A>G		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
IRS1	3667	MSKCC	GRCh37	2	227662196	227662196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	145	602	0	ENST00000305123.5:c.1259C>T	p.Pro420Leu	p.P420L	ENST00000305123	NM_005544.2	420	cCc/cTc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643537	52643538	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0062240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	37	420	0	ENST00000394830.3:c.2358dup	p.Val787CysfsTer9	p.V787Cfs*9	ENST00000394830	NM_018313.4	786	-/T																																																																															
RASA1	5921	MSKCC	GRCh37	5	86674263	86674263	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0062240-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	32	419	0	ENST00000274376.6:c.2395G>T	p.Glu799Ter	p.E799*	ENST00000274376	NM_002890.2	799	Gag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720424	89720755	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTTGAGTGAAGAAAAATCATGTGAATGAAAATGCAACAGATAACTCAGATTGCCTTATAATAGTCTTTGTGTTTACCTTTATTCAGAATATCAAATGATAGTTTATTTTGTTGACTTTTTGCAAATGTTTAACATAGGTGACAGATTTTCTTTTTTAAAAAAATAAAACATCATTAATTAAATATGTCATTTCATTTCTTTTTCTTTTCTTTTTTTTTTTTTTTAGGACAAAATGTTTCACTTTTGGGTAAATACATTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTAGAAAATGGAAGTCTATGTGATCAAGAAATCGATAGC	ATTTGAGTGAAGAAAAATCATGTGAATGAAAATGCAACAGATAACTCAGATTGCCTTATAATAGTCTTTGTGTTTACCTTTATTCAGAATATCAAATGATAGTTTATTTTGTTGACTTTTTGCAAATGTTTAACATAGGTGACAGATTTTCTTTTTTAAAAAAATAAAACATCATTAATTAAATATGTCATTTCATTTCTTTTTCTTTTCTTTTTTTTTTTTTTTAGGACAAAATGTTTCACTTTTGGGTAAATACATTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTAGAAAATGGAAGTCTATGTGATCAAGAAATCGATAGC	-			P-0062243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			16	53	22	0	ENST00000371953.3:c.802-222_911del		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																																
KNSTRN	90417	MSKCC	GRCh37	15	40675091	40675091	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	177	465	0	ENST00000249776.8:c.55T>C	p.Ser19Pro	p.S19P	ENST00000249776	NM_033286.3	19	Tct/Cct																																																																															
STAT3	6774	MSKCC	GRCh37	17	40477080	40477080	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0062243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	136	422	0	ENST00000264657.5:c.1366-1G>T		p.X456_splice	ENST00000264657	NM_139276.2	456																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44922755	44922755	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	92	473	0	ENST00000377967.4:c.1616C>G	p.Ser539Cys	p.S539C	ENST00000377967	NM_021140.2	539	tCt/tGt																																																																															
XIAP	331	MSKCC	GRCh37	X	123019580	123019580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	35	367	0	ENST00000355640.3:c.68T>C	p.Phe23Ser	p.F23S	ENST00000355640		23	tTt/tCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882025		P-0062244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	202	618	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52693404	52693404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	56	531	0	ENST00000322088.6:c.55G>A	p.Glu19Lys	p.E19K	ENST00000322088	NM_014225.5	19	Gaa/Aaa																																																																															
RB1	5925	MSKCC	GRCh37	13	48953730	48953730	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs3092891		P-0062244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	111	191	0	ENST00000267163.4:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000267163	NM_000321.2	445	Cga/Tga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099170	157099170	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1455171423		P-0062244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			89	93	467	0	ENST00000346085.5:c.107C>T	p.Ser36Phe	p.S36F	ENST00000346085	NM_020732.3	36	tCc/tTc																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47599071	47599071	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	203	574	0	ENST00000395288.2:c.481G>C	p.Glu161Gln	p.E161Q	ENST00000395288	NM_016506.5	161	Gag/Cag																																																																															
POLE	5426	MSKCC	GRCh37	12	133220041	133220041	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1258004616		P-0062244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	172	639	0	ENST00000320574.5:c.4396G>C	p.Glu1466Gln	p.E1466Q	ENST00000320574	NM_006231.2	1466	Gag/Cag																																																																															
AKT1	207	MSKCC	GRCh37	14	105241541	105241541	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0062244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	130	585	0	ENST00000349310.3:c.439A>T	p.Met147Leu	p.M147L	ENST00000349310	NM_001014432.1	147	Atg/Ttg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2107180	2107180	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0062244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	148	544	0	ENST00000219476.3:c.848+1G>C		p.X283_splice	ENST00000219476	NM_000548.3	283																																																																																
CYLD	1540	MSKCC	GRCh37	16	50783848	50783848	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	189	506	0	ENST00000398568.2:c.239C>G	p.Ala80Gly	p.A80G	ENST00000398568	NM_001042412.1	80	gCa/gGa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883216	37883216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	163	529	0	ENST00000269571.5:c.3119G>A	p.Gly1040Glu	p.G1040E	ENST00000269571		1040	gGg/gAg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190732526	190732526	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0062244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	18	425	0	ENST00000441310.2:c.2344C>G	p.Leu782Val	p.L782V	ENST00000441310	NM_000534.4	782	Ctt/Gtt																																																																															
IDH1	3417	MSKCC	GRCh37	2	209103847	209103847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	21	430	0	ENST00000345146.2:c.1102G>A	p.Glu368Lys	p.E368K	ENST00000345146	NM_005896.2	368	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916818	178916818	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	200	480	0	ENST00000263967.3:c.205A>G	p.Ile69Val	p.I69V	ENST00000263967	NM_006218.2	69	Att/Gtt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202797	128202797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062251-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	37	738	0	ENST00000341105.2:c.923G>A	p.Arg308Gln	p.R308Q	ENST00000341105	NM_032638.4	308	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0062251-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	13	362	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP63	8626	MSKCC	GRCh37	3	189608631	189608631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062251-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	21	583	0	ENST00000264731.3:c.1706G>T	p.Gly569Val	p.G569V	ENST00000264731	NM_003722.4	569	gGg/gTg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671471	30671471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062251-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	19	780	0	ENST00000376406.3:c.5489G>T	p.Gly1830Val	p.G1830V	ENST00000376406	NM_014641.2	1830	gGg/gTg																																																																															
POT1	25913	MSKCC	GRCh37	7	124503463	124503463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062251-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	18	590	0	ENST00000357628.3:c.487G>T	p.Asp163Tyr	p.D163Y	ENST00000357628	NM_015450.2	163	Gac/Tac																																																																															
AGO2	27161	MSKCC	GRCh37	8	141595330	141595330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062251-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	16	707	1	ENST00000220592.5:c.103G>A	p.Gly35Arg	p.G35R	ENST00000220592	NM_012154.3	35	Ggg/Agg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080363	5080363	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062251-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	10	441	0	ENST00000381652.3:c.2266G>T	p.Ala756Ser	p.A756S	ENST00000381652	NM_004972.3	756	Gct/Tct																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971114	21971115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGTCGGGTGAGAGTGGCG			P-0062264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			745	110	768	0	ENST00000304494.5:c.225_243dup	p.Val82ArgfsTer44	p.V82Rfs*44	ENST00000304494	NM_000077.4	81	-/CGCCACTCTCACCCGACCC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0062264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	115	345	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ATM	472	MSKCC	GRCh37	11	108139332	108139332	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	132	434	0	ENST00000278616.4:c.2834A>C	p.His945Pro	p.H945P	ENST00000278616	NM_000051.3	945	cAt/cCt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207138	1207140	+	frameshift_variant	Frame_Shift_Del	DEL	GCC	GCC	CA			P-0062264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	507	672	0	ENST00000326873.7:c.226_228delinsCA	p.Ala76GlnfsTer20	p.A76Qfs*20	ENST00000326873	NM_000455.4	76	GCC/CA																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164704	36164712	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGCGACG	CTTGCGACG	A			P-0062264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			886	312	816	0	ENST00000300305.3:c.1163_1171delinsT	p.Ser388PhefsTer209	p.S388Ffs*209	ENST00000300305		388	tCGTCGCAAGcg/tTcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0062269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	178	500	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575152	48575152	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	86	379	0	ENST00000342988.3:c.346C>T	p.Gln116Ter	p.Q116*	ENST00000342988	NM_005359.5	116	Cag/Tag																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082811	16082811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	96	505	0	ENST00000281043.3:c.625C>T	p.Pro209Ser	p.P209S	ENST00000281043	NM_005378.4	209	Ccg/Tcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0062269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	111	300	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
STK40	83931	MSKCC	GRCh37	1	36807450	36807450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	141	610	0	ENST00000373129.3:c.1214G>A	p.Gly405Asp	p.G405D	ENST00000373129	NM_032017.1	405	gGc/gAc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90645531	90645538	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGTGGG	GAGGTGGG	-			P-0062269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	100	405	0	ENST00000330062.3:c.85_92del	p.Pro29AlafsTer25	p.P29Afs*25	ENST00000330062	NM_002168.2	29	CCCACCTCg/g																																																																															
STK11	6794	MSKCC	GRCh37	19	1220703	1220703	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	46	575	0	ENST00000326873.7:c.721G>C	p.Ala241Pro	p.A241P	ENST00000326873	NM_000455.4	241	Gct/Cct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0062275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	88	304	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012381	29012382	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0062275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	28	393	0	ENST00000282397.4:c.489dup	p.Asn164Ter	p.N164*	ENST00000282397	NM_002019.4	163	-/T																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600530	10600530	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0062275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	52	646	0	ENST00000171111.5:c.1326-1G>T		p.X442_splice	ENST00000171111	NM_203500.1	442																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11141406	11141406	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0062275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	45	561	0	ENST00000344626.4:c.3383G>A	p.Gly1128Glu	p.G1128E	ENST00000344626	NM_003072.3	1128	gGa/gAa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271589	15271589	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0062275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	56	713	0	ENST00000263388.2:c.6850A>T	p.Thr2284Ser	p.T2284S	ENST00000263388	NM_000435.2	2284	Act/Tct																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198265454	198265454	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0062275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	26	308	0	ENST00000335508.6:c.2703A>T	p.Gln901His	p.Q901H	ENST00000335508	NM_012433.2	901	caA/caT																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437431	52437431	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0062275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	36	624	0	ENST00000460680.1:c.1729+1G>A		p.X577_splice	ENST00000460680	NM_004656.3	577																																																																																
IL7R	3575	MSKCC	GRCh37	5	35876229	35876229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	19	589	0	ENST00000303115.3:c.1021G>A	p.Gly341Arg	p.G341R	ENST00000303115	NM_002185.3	341	Gga/Aga																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956785	68956785	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062275-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	64	396	0	ENST00000288368.4:c.903C>G	p.Asn301Lys	p.N301K	ENST00000288368	NM_024870.2	301	aaC/aaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0062279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	64	455	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0062279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	32	228	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145753	11145753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	22	616	0	ENST00000344626.4:c.4115G>A	p.Arg1372His	p.R1372H	ENST00000344626	NM_003072.3	1372	cGc/cAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853112	151853112	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062279-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	41	393	0	ENST00000262189.6:c.11843A>G	p.Gln3948Arg	p.Q3948R	ENST00000262189	NM_170606.2	3948	cAg/cGg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843495	3843495	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			48	33	582	2	ENST00000262367.5:c.1108C>T	p.Arg370Ter	p.R370*	ENST00000262367	NM_004380.2	370	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0062282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			25	37	624	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
TOP1	7150	MSKCC	GRCh37	20	39657740	39657740	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0062282-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	51	455	0	ENST00000361337.2:c.33G>C	p.Gln11His	p.Q11H	ENST00000361337	NM_003286.2	11	caG/caC																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	55	594	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0062327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	65	207	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912660		P-0062327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	131	529	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	420075	420075	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	114	504	0	ENST00000399788.2:c.3192G>C	p.Lys1064Asn	p.K1064N	ENST00000399788	NM_001042603.1	1064	aaG/aaC																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066772	30066772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	75	425	0	ENST00000331968.5:c.2359G>A	p.Glu787Lys	p.E787K	ENST00000331968	NM_002742.2	787	Gaa/Aaa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991400	72991400	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201144589		P-0062327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	246	491	0	ENST00000268489.5:c.2645C>T	p.Ser882Leu	p.S882L	ENST00000268489	NM_006885.3	882	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112179502	112179502	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1366190280		P-0062327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	108	507	0	ENST00000257430.4:c.8211G>C	p.Glu2737Asp	p.E2737D	ENST00000257430	NM_000038.5	2737	gaG/gaC																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46512227	46512227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	71	433	0	ENST00000262741.5:c.1012G>A	p.Asp338Asn	p.D338N	ENST00000262741	NM_003629.3	338	Gat/Aat																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94194128	94194128	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	39	266	0	ENST00000323929.3:c.1300A>G	p.Lys434Glu	p.K434E	ENST00000323929	NM_005591.3	434	Aaa/Gaa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16024486	16024486	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	129	557	0	ENST00000268712.3:c.1732C>T	p.Gln578Ter	p.Q578*	ENST00000268712	NM_006311.3	578	Cag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29486063	29486064	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs771115661		P-0062327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	46	261	0	ENST00000358273.4:c.246_247del	p.Gln83ValfsTer23	p.Q83Vfs*23	ENST00000358273	NM_001042492.2	80	taTCtc/tatc																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804170	46804170	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	123	506	0	ENST00000290295.7:c.837G>C	p.Lys279Asn	p.K279N	ENST00000290295	NM_006361.5	279	aaG/aaC																																																																															
ALB	213	MSKCC	GRCh37	4	74283364	74283364	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	58	340	0	ENST00000295897.4:c.1406G>C	p.Arg469Thr	p.R469T	ENST00000295897	NM_000477.5	469	aGa/aCa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53253993	53253993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062327-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	87	500	0	ENST00000375401.3:c.79C>T	p.Pro27Ser	p.P27S	ENST00000375401	NM_004187.3	27	Cct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540652		P-0062329-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	347	450	3	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0062340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	123	528	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039440	47039440	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	C			P-0062340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	52	302	0	ENST00000329236.7:c.828+4G>C		p.X276_splice	ENST00000329236	NM_001204466.1	276																																																																																
FGF19	9965	MSKCC	GRCh37	11	69518440	69518440	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	14	345	0	ENST00000294312.3:c.205G>T	p.Asp69Tyr	p.D69Y	ENST00000294312	NM_005117.2	69	Gac/Tac																																																																															
REL	5966	MSKCC	GRCh37	2	61149440	61149440	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	35	558	0	ENST00000295025.8:c.1630A>G	p.Met544Val	p.M544V	ENST00000295025	NM_002908.2	544	Atg/Gtg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468433	89468433	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062340-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	30	469	0	ENST00000336596.2:c.1967A>T	p.Lys656Ile	p.K656I	ENST00000336596	NM_005233.5	656	aAa/aTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0062342-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	42	198	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0062342-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	142	445	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578194	7578194	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062342-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	141	448	0	ENST00000269305.4:c.655C>G	p.Pro219Ala	p.P219A	ENST00000269305	NM_001126112.2	219	Ccc/Gcc																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594580	47594580	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062342-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	84	522	0	ENST00000395288.2:c.1459del	p.Asp487MetfsTer14	p.D487Mfs*14	ENST00000395288	NM_016506.5	487	Gat/at																																																																															
TAP2	6891	MSKCC	GRCh37	6	32806010	32806010	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0062342-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	64	392	0	ENST00000374899.4:c.1A>G	p.Met1?	p.M1?	ENST00000374899	NM_018833.2	1	Atg/Gtg																																																																															
MED12	9968	MSKCC	GRCh37	X	70345969	70345969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062344-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	34	236	0	ENST00000374080.3:c.2506C>T	p.Leu836Phe	p.L836F	ENST00000374080		836	Ctt/Ttt																																																																															
SESN1	27244	MSKCC	GRCh37	6	109415193	109415193	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062344-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	119	486	0	ENST00000436639.2:c.84T>G	p.Ile28Met	p.I28M	ENST00000436639	NM_014454.2	28	atT/atG																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0062349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	57	471	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CBFB	865	MSKCC	GRCh37	16	67070608	67070608	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	27	472	0	ENST00000412916.2:c.232C>T	p.Arg78Ter	p.R78*	ENST00000412916		78	Cga/Tga																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028667	12028667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062349-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	27	393	0	ENST00000353533.5:c.870del	p.Trp291GlyfsTer27	p.W291Gfs*27	ENST00000353533	NM_003010.3	290	gtC/gt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0062368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	186	399	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs876660821		P-0062368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			49	432	713	0	ENST00000269305.4:c.537T>G	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caG																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560898	9560898	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767455314		P-0062368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			2428	219	597	1	ENST00000353224.5:c.884C>T	p.Pro295Leu	p.P295L	ENST00000353224	NM_177990.2	295	cCg/cTg																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56772384	56772384	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	43	471	0	ENST00000337432.4:c.238G>C	p.Glu80Gln	p.E80Q	ENST00000337432	NM_058216.2	80	Gag/Cag																																																																															
KDR	3791	MSKCC	GRCh37	4	55973979	55973979	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762221907		P-0062368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	29	578	1	ENST00000263923.4:c.1337C>T	p.Thr446Met	p.T446M	ENST00000263923	NM_002253.2	446	aCg/aTg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279766	46279766	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			854	194	540	0	ENST00000371998.3:c.3692G>C	p.Arg1231Thr	p.R1231T	ENST00000371998		1231	aGa/aCa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78931424	78931424	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0062368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	175	534	0	ENST00000306801.3:c.3371G>C	p.Gly1124Ala	p.G1124A	ENST00000306801	NM_020761.2	1124	gGa/gCa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8338930	8338930	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1380382010		P-0062368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	155	402	0	ENST00000356435.5:c.5371G>T	p.Asp1791Tyr	p.D1791Y	ENST00000356435		1791	Gat/Tat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953974	32953974	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs80359156		P-0062368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	96	316	0	ENST00000380152.3:c.9041C>G	p.Ser3014Ter	p.S3014*	ENST00000380152		3014	tCa/tGa																																																																															
TET1	80312	MSKCC	GRCh37	10	70405064	70405064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	144	430	0	ENST00000373644.4:c.2578G>A	p.Glu860Lys	p.E860K	ENST00000373644	NM_030625.2	860	Gag/Aag																																																																															
GAB2	9846	MSKCC	GRCh37	11	77938071	77938071	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1975	229	461	0	ENST00000361507.4:c.647G>C	p.Arg216Thr	p.R216T	ENST00000361507	NM_080491.2	216	aGa/aCa																																																																															
RARA	5914	MSKCC	GRCh37	17	38512292	38512292	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			2144	1217	485	0	ENST00000254066.5:c.1203G>C	p.Glu401Asp	p.E401D	ENST00000254066	NM_000964.3	401	gaG/gaC																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46583335	46583335	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	260	408	0	ENST00000263734.3:c.263A>T	p.Asp88Val	p.D88V	ENST00000263734	NM_001430.4	88	gAc/gTc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096343	178096343	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	174	578	0	ENST00000397062.3:c.988C>G	p.Gln330Glu	p.Q330E	ENST00000397062	NM_006164.4	330	Caa/Gaa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178097203	178097203	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	168	396	0	ENST00000397062.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000397062	NM_006164.4	171	Cag/Tag																																																																															
BTK	695	MSKCC	GRCh37	X	100626680	100626680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	27	371	0	ENST00000308731.7:c.250G>A	p.Glu84Lys	p.E84K	ENST00000308731	NM_000061.2	84	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0062370-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	114	518	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0062370-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	112	556	0	ENST00000257430.4:c.4037C>G	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tGa																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288980	33288980	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0062370-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	45	673	0	ENST00000374542.5:c.572del	p.Leu191TrpfsTer38	p.L191Wfs*38	ENST00000374542	NM_001141970.1	191	tTg/tg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261779	16261779	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062370-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	36	722	0	ENST00000375759.3:c.9044A>G	p.His3015Arg	p.H3015R	ENST00000375759	NM_015001.2	3015	cAt/cGt																																																																															
MSI1	4440	MSKCC	GRCh37	12	120805887	120805887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062370-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	48	674	0	ENST00000257552.2:c.191G>A	p.Gly64Asp	p.G64D	ENST00000257552	NM_002442.3	64	gGc/gAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830620	72830655	+	inframe_deletion	In_Frame_Del	DEL	GGAGTCACACTCGAGCTTTTCCAGGTTCTCTCCCTG	GGAGTCACACTCGAGCTTTTCCAGGTTCTCTCCCTG	-			P-0062370-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	35	582	0	ENST00000268489.5:c.5926_5961del	p.Gln1976_Ser1987del	p.Q1976_S1987del	ENST00000268489	NM_006885.3	1976	CAGGGAGAGAACCTGGAAAAGCTCGAGTGTGACTCC/-																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99175955	99175955	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062370-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	35	425	0	ENST00000074304.5:c.1867C>A	p.Pro623Thr	p.P623T	ENST00000074304	NM_001134224.1	623	Cca/Aca																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225495	26225495	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062370-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			817	55	949	0	ENST00000360408.1:c.113A>C	p.Lys38Thr	p.K38T	ENST00000360408	NM_003532.2	38	aAg/aCg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979251	93979251	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062370-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	34	477	0	ENST00000369303.4:c.1577A>G	p.Tyr526Cys	p.Y526C	ENST00000369303	NM_004440.3	526	tAc/tGc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11999011	11999011	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0062373-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	130	386	0	ENST00000353533.5:c.513G>C	p.Glu171Asp	p.E171D	ENST00000353533	NM_003010.3	171	gaG/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0062417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	267	496	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
AURKA	6790	MSKCC	GRCh37	20	54959348	54959348	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	10	205	0	ENST00000312783.6:c.352C>T	p.Gln118Ter	p.Q118*	ENST00000312783	NM_198436.1	118	Cag/Tag																																																																															
B2M	567	MSKCC	GRCh37	15	45007736	45007736	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1370797084		P-0062417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	112	518	0	ENST00000558401.1:c.183G>C	p.Lys61Asn	p.K61N	ENST00000558401	NM_004048.2	61	aaG/aaC																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120612002	120612002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	27	160	0	ENST00000256646.2:c.19G>T	p.Ala7Ser	p.A7S	ENST00000256646	NM_024408.3	7	Gct/Tct																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246021929	246021929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	64	485	0	ENST00000388985.4:c.945C>G	p.Ser315Arg	p.S315R	ENST00000388985		315	agC/agG																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112745395	112745395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	50	341	0	ENST00000369452.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000369452	NM_007373.3	238	tGt/tTt																																																																															
EED	8726	MSKCC	GRCh37	11	85961390	85961390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	141	522	0	ENST00000263360.6:c.167C>T	p.Pro56Leu	p.P56L	ENST00000263360	NM_003797.3	56	cCt/cTt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343408	118343408	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	59	637	0	ENST00000534358.1:c.1534C>A	p.Pro512Thr	p.P512T	ENST00000534358	NM_005933.3	512	Cca/Aca																																																																															
RB1	5925	MSKCC	GRCh37	13	49033947	49033947	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs727504122		P-0062417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	148	472	0	ENST00000267163.4:c.2084T>G	p.Met695Arg	p.M695R	ENST00000267163	NM_000321.2	695	aTg/aGg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40500520	40500520	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	104	453	0	ENST00000264657.5:c.15T>G	p.Asn5Lys	p.N5K	ENST00000264657	NM_139276.2	5	aaT/aaG																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591831	48591831	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	152	578	0	ENST00000342988.3:c.994G>T	p.Asp332Tyr	p.D332Y	ENST00000342988	NM_005359.5	332	Gat/Tat																																																																															
ATR	545	MSKCC	GRCh37	3	142266737	142266737	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0062417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	49	343	0	ENST00000350721.4:c.3187G>T	p.Glu1063Ter	p.E1063*	ENST00000350721	NM_001184.3	1063	Gaa/Taa																																																																															
REST	5978	MSKCC	GRCh37	4	57797704	57797704	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	44	577	0	ENST00000309042.7:c.2680C>G	p.Leu894Val	p.L894V	ENST00000309042	NM_005612.4	894	Ctt/Gtt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69129882	69129882	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062417-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			965	101	611	0	ENST00000288368.4:c.4636A>T	p.Ile1546Phe	p.I1546F	ENST00000288368	NM_024870.2	1546	Atc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0062426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	26	566	0	ENST00000269305.4:c.376T>C	p.Tyr126His	p.Y126H	ENST00000269305	NM_001126112.2	126	Tac/Cac																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792732	33792737	+	inframe_deletion	In_Frame_Del	DEL	GCGGGT	GCGGGT	-	rs1002805239		P-0062426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	8	561	1	ENST00000498907.2:c.584_589del	p.His195_Pro196del	p.H195_P196del	ENST00000498907	NM_004364.3	195	cACCCGCcg/ccg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0062426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	15	336	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132522	11132522	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778175819		P-0062426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	46	694	0	ENST00000344626.4:c.2738C>T	p.Pro913Leu	p.P913L	ENST00000344626	NM_003072.3	913	cCg/cTg																																																																															
ATR	545	MSKCC	GRCh37	3	142184069	142184069	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	12	210	0	ENST00000350721.4:c.6911C>A	p.Ala2304Asp	p.A2304D	ENST00000350721	NM_001184.3	2304	gCt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974800	21974801	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0062426-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	23	654	0	ENST00000304494.5:c.26dup	p.Met9IlefsTer6	p.M9Ifs*6	ENST00000304494	NM_000077.4	9	atg/atTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0062428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			789	68	530	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062428-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			880	70	684	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944264	81944264	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1009796025		P-0062429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	205	500	0	ENST00000359376.3:c.1873G>A	p.Ala625Thr	p.A625T	ENST00000359376	NM_002661.3	625	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577560	7577560	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520002		P-0062429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	384	516	0	ENST00000269305.4:c.721T>G	p.Ser241Ala	p.S241A	ENST00000269305	NM_001126112.2	241	Tcc/Gcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398260	25398260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062429-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	118	270	0	ENST00000256078.4:c.59C>T	p.Thr20Met	p.T20M	ENST00000256078	NM_033360.2	20	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578224	7578224	+	stop_gained	Nonsense_Mutation	SNP	T	T	A	rs1429743956		P-0062455-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	228	662	0	ENST00000269305.4:c.625A>T	p.Arg209Ter	p.R209*	ENST00000269305	NM_001126112.2	209	Aga/Tga																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519963		P-0062455-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	15	201	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138521	11138521	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0062455-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	178	508	0	ENST00000344626.4:c.3277C>T	p.Arg1093Ter	p.R1093*	ENST00000344626	NM_003072.3	1093	Cga/Tga																																																																															
JAK3	3718	MSKCC	GRCh37	19	17954248	17954248	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062455-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	313	614	0	ENST00000458235.1:c.361C>A	p.Arg121Ser	p.R121S	ENST00000458235	NM_000215.3	121	Cgc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	530	865	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0021536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	47	258	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577123	7577123	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs876660333		P-0021536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	314	898	0	ENST00000269305.4:c.815T>G	p.Val272Gly	p.V272G	ENST00000269305	NM_001126112.2	272	gTg/gGg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185190872	185190872	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	52	898	1	ENST00000265026.3:c.1753C>T	p.Arg585Ter	p.R585*	ENST00000265026	NM_004721.4	585	Cga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258977	16258977	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751501193		P-0021536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	166	843	2	ENST00000375759.3:c.6242G>A	p.Arg2081Gln	p.R2081Q	ENST00000375759	NM_015001.2	2081	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175074	112175074	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	131	356	0	ENST00000257430.4:c.3784del	p.Tyr1262IlefsTer3	p.Y1262Ifs*3	ENST00000257430	NM_000038.5	1261	acT/ac																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524304	176524304	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	329	859	0	ENST00000292408.4:c.2165T>A	p.Met722Lys	p.M722K	ENST00000292408	NM_213647.1	722	aTg/aAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411496	63411497	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0021536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	388	1031	0	ENST00000330258.3:c.1670_1671del	p.Glu557GlyfsTer22	p.E557Gfs*22	ENST00000330258	NM_152424.3	557	gAG/g																																																																															
RB1	5925	MSKCC	GRCh37	13	48941653	48941653	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0060971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			19	222	177	0	ENST00000267163.4:c.963C>G	p.Tyr321Ter	p.Y321*	ENST00000267163	NM_000321.2	321	taC/taG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			15	376	362	0	ENST00000269305.4:c.713del	p.Cys238LeufsTer9	p.C238Lfs*9	ENST00000269305	NM_001126112.2	238	tGt/tt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0061635-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	77	419	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061635-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			340	78	545	0	ENST00000269305.4:c.401T>C	p.Phe134Ser	p.F134S	ENST00000269305	NM_001126112.2	134	tTt/tCt																																																																															
BCL6	604	MSKCC	GRCh37	3	187447775	187447775	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779270221		P-0061635-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			471	89	533	0	ENST00000232014.4:c.418C>T	p.Arg140Cys	p.R140C	ENST00000232014	NM_001130845.1	140	Cgt/Tgt																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630782	67630782	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061635-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			502	43	457	0	ENST00000272342.5:c.968A>T	p.Lys323Ile	p.K323I	ENST00000272342	NM_019002.3	323	aAa/aTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945424	151945424	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0061635-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			333	58	325	0	ENST00000262189.6:c.2095T>G	p.Leu699Val	p.L699V	ENST00000262189	NM_170606.2	699	Tta/Gta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0062066-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	252	458	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0062066-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	104	377	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578179	7578179	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0062066-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	260	563	0	ENST00000269305.4:c.670G>T	p.Glu224Ter	p.E224*	ENST00000269305	NM_001126112.2	224	Gag/Tag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983276	15983276	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0062066-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	176	402	0	ENST00000268712.3:c.3501+2T>G		p.X1167_splice	ENST00000268712	NM_006311.3	1167																																																																																
HIST1H3I	8354	MSKCC	GRCh37	6	27839963	27839963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062066-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	194	915	0	ENST00000328488.2:c.131C>T	p.Pro44Leu	p.P44L	ENST00000328488	NM_003533.2	44	cCc/cTc																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80646076	80646076	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062066-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			74	24	139	0	ENST00000286548.4:c.76G>C	p.Glu26Gln	p.E26Q	ENST00000286548	NM_002072.3	26	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	377	670	3	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
ATR	545	MSKCC	GRCh37	3	142176478	142176478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	205	420	0	ENST00000350721.4:c.7623G>T	p.Arg2541Ser	p.R2541S	ENST00000350721	NM_001184.3	2541	agG/agT																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	234	411	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	407	659	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530064	212530064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	120	533	0	ENST00000342788.4:c.1855C>T	p.Pro619Ser	p.P619S	ENST00000342788	NM_005235.2	619	Cca/Tca																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281344	49281344	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202077345		P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	291	551	0	ENST00000282018.3:c.391G>A	p.Val131Met	p.V131M	ENST00000282018	NM_020377.2	131	Gtg/Atg																																																																															
ALK	238	MSKCC	GRCh37	2	29462682	29462682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	234	546	0	ENST00000389048.3:c.2219G>A	p.Gly740Glu	p.G740E	ENST00000389048	NM_004304.4	740	gGa/gAa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265367	152265367	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	208	556	0	ENST00000206249.3:c.820G>T	p.Gly274Trp	p.G274W	ENST00000206249	NM_000125.3	274	Ggg/Tgg																																																																															
GNB1	2782	MSKCC	GRCh37	1	1735885	1735885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	203	459	0	ENST00000378609.4:c.403G>T	p.Val135Leu	p.V135L	ENST00000378609	NM_002074.3	135	Gtg/Ttg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851402	156851402	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	174	561	0	ENST00000524377.1:c.2359G>T	p.Ala787Ser	p.A787S	ENST00000524377	NM_002529.3	787	Gca/Tca																																																																															
SDHC	6391	MSKCC	GRCh37	1	161326616	161326616	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	118	372	0	ENST00000367975.2:c.391G>T	p.Gly131Trp	p.G131W	ENST00000367975	NM_003001.3	131	Ggg/Tgg																																																																															
APLNR	187	MSKCC	GRCh37	11	57003790	57003790	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	G			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	292	642	0	ENST00000257254.3:c.689G>C	p.Gly230Ala	p.G230A	ENST00000257254		230	gGc/gCc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123704	46123704	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	273	502	0	ENST00000334344.6:c.85A>G	p.Ser29Gly	p.S29G	ENST00000334344	NM_152641.2	29	Agc/Ggc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420591	49420592	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	304	701	0	ENST00000301067.7:c.15157dup	p.Asp5053GlyfsTer19	p.D5053Gfs*19	ENST00000301067	NM_003482.3	5053	gac/gGac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060578	38060578	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	373	737	0	ENST00000250448.2:c.1411A>T	p.Thr471Ser	p.T471S	ENST00000250448	NM_004496.3	471	Act/Tct																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640316	3640316	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	444	601	0	ENST00000294008.3:c.3323A>C	p.Glu1108Ala	p.E1108A	ENST00000294008	NM_032444.2	1108	gAg/gCg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274252	10274252	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	121	448	0	ENST00000330684.3:c.17A>G	p.Tyr6Cys	p.Y6C	ENST00000330684	NM_001134407.1	6	tAt/tGt																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86545100	86545100	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	278	608	0	ENST00000262426.4:c.925C>A	p.Leu309Met	p.L309M	ENST00000262426	NM_001451.2	309	Ctg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579483	7579483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	392	745	0	ENST00000269305.4:c.204G>T	p.Glu68Asp	p.E68D	ENST00000269305	NM_001126112.2	68	gaG/gaT																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61305265	61305265	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	34	237	0	ENST00000341074.5:c.861C>G	p.Phe287Leu	p.F287L	ENST00000341074	NM_002974.2	287	ttC/ttG																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250915	10250915	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	116	492	0	ENST00000340748.4:c.3565G>C	p.Glu1189Gln	p.E1189Q	ENST00000340748		1189	Gag/Cag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098347	11098347	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	156	541	0	ENST00000344626.4:c.865A>G	p.Met289Val	p.M289V	ENST00000344626	NM_003072.3	289	Atg/Gtg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225339030	225339030	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	147	392	0	ENST00000264414.4:c.2239G>T	p.Gly747Ter	p.G747*	ENST00000264414	NM_003590.4	747	Gga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017854	31017854	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	233	388	0	ENST00000375687.4:c.716C>T	p.Thr239Ile	p.T239I	ENST00000375687	NM_015338.5	239	aCa/aTa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670849	134670849	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	143	528	0	ENST00000398015.3:c.760A>T	p.Thr254Ser	p.T254S	ENST00000398015	NM_004441.4	254	Acc/Tcc																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504402	186504402	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	174	358	0	ENST00000323963.5:c.739A>G	p.Ile247Val	p.I247V	ENST00000323963		247	Atc/Gtc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524553	187524553	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	227	482	0	ENST00000441802.2:c.11127del	p.Lys3709AsnfsTer11	p.K3709Nfs*11	ENST00000441802	NM_005245.3	3709	aaA/aa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38963120	38963120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	218	394	0	ENST00000357387.3:c.1424G>C	p.Cys475Ser	p.C475S	ENST00000357387	NM_152756.3	475	tGt/tCt																																																																															
APC	324	MSKCC	GRCh37	5	112174791	112174791	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	337	532	0	ENST00000257430.4:c.3500A>C	p.Asn1167Thr	p.N1167T	ENST00000257430	NM_000038.5	1167	aAt/aCt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117677798	117677798	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	187	402	0	ENST00000368508.3:c.4135A>G	p.Met1379Val	p.M1379V	ENST00000368508	NM_002944.2	1379	Atg/Gtg																																																																															
PARK2	5071	MSKCC	GRCh37	6	161970029	161970029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	122	413	0	ENST00000366898.1:c.940C>T	p.Arg314Trp	p.R314W	ENST00000366898	NM_004562.2	314	Cgg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140549976	140549976	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	246	365	0	ENST00000288602.6:c.175G>T	p.Glu59Ter	p.E59*	ENST00000288602	NM_004333.4	59	Gaa/Taa																																																																															
TEK	7010	MSKCC	GRCh37	9	27213524	27213525	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	272	431	0	ENST00000380036.4:c.2924dup	p.Asn975LysfsTer46	p.N975Kfs*46	ENST00000380036	NM_000459.3	974	gaa/gAaa																																																																															
ATRX	546	MSKCC	GRCh37	X	76939954	76939954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062203-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			127	164	264	0	ENST00000373344.5:c.794G>T	p.Cys265Phe	p.C265F	ENST00000373344	NM_000489.3	265	tGc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0061833-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			239	22	636	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0062038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	535	520	0	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga																																																																															
ATM	472	MSKCC	GRCh37	11	108201089	108201089	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779865		P-0062038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	473	483	0	ENST00000278616.4:c.7456C>T	p.Arg2486Ter	p.R2486*	ENST00000278616	NM_000051.3	2486	Cga/Tga																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246198	41246198	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0062038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			747	511	542	0	ENST00000357654.3:c.1350A>T	p.Lys450Asn	p.K450N	ENST00000357654	NM_007294.3	450	aaA/aaT																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120498	70120499	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0062038-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	1032	733	0	ENST00000245479.2:c.1503dup	p.Val502ArgfsTer76	p.V502Rfs*76	ENST00000245479	NM_000346.3	500	-/C																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0062039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	70	346	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0062039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	613	645	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs926053251		P-0062039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	28	684	0	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501195		P-0062039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	191	789	0	ENST00000269305.4:c.313G>A	p.Gly105Ser	p.G105S	ENST00000269305	NM_001126112.2	105	Ggc/Agc																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2647725	2647725	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	189	634	0	ENST00000342085.4:c.1628G>A	p.Trp543Ter	p.W543*	ENST00000342085	NM_002613.4	543	tGg/tAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692902	89692903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0062039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	137	436	0	ENST00000371953.3:c.387_388dup	p.Arg130HisfsTer5	p.R130Hfs*5	ENST00000371953	NM_000314.4	129	gga/ggACa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913615	32913615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	94	469	0	ENST00000380152.3:c.5123C>A	p.Ala1708Glu	p.A1708E	ENST00000380152		1708	gCa/gAa																																																																															
REL	5966	MSKCC	GRCh37	2	61149344	61149344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	200	692	0	ENST00000295025.8:c.1534C>T	p.Pro512Ser	p.P512S	ENST00000295025	NM_002908.2	512	Cca/Tca																																																																															
IL7R	3575	MSKCC	GRCh37	5	35861006	35861006	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200464578		P-0062039-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	262	613	0	ENST00000303115.3:c.135G>T	p.Gln45His	p.Q45H	ENST00000303115	NM_002185.3	45	caG/caT																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0062057-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	68	345	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062057-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	76	373	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
CDH1	999	MSKCC	GRCh37	16	68857531	68857531	+	splice_donor_variant	Splice_Site	SNP	T	T	C	rs876661120		P-0062057-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	45	257	0	ENST00000261769.5:c.2164+2T>C		p.X722_splice	ENST00000261769	NM_004360.3	722																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71948712	71948712	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374001069		P-0062057-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	42	559	0	ENST00000298229.2:c.3424C>T	p.Arg1142Cys	p.R1142C	ENST00000298229	NM_001567.3	1142	Cgc/Tgc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55138645	55138669	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTTCCTGATATTGAGTGGATGAT	CGCTTCCTGATATTGAGTGGATGAT	-			P-0062057-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	28	262	0	ENST00000257290.5:c.1322_1346del	p.Pro441HisfsTer40	p.P441Hfs*40	ENST00000257290	NM_006206.4	441	cCGCTTCCTGATATTGAGTGGATGATa/ca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510024	187510024	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs183728932		P-0062057-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	25	367	0	ENST00000441802.2:c.13489G>A	p.Asp4497Asn	p.D4497N	ENST00000441802	NM_005245.3	4497	Gat/Aat																																																																															
RASA1	5921	MSKCC	GRCh37	5	86627237	86627237	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0062057-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	37	326	0	ENST00000274376.6:c.612T>A	p.Tyr204Ter	p.Y204*	ENST00000274376	NM_002890.2	204	taT/taA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0062067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	138	824	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0062067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	288	521	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123176470	123176470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	35	415	0	ENST00000218089.9:c.437G>A	p.Arg146Gln	p.R146Q	ENST00000218089	NM_001042749.1	146	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574002	7574006	+	frameshift_variant	Frame_Shift_Del	DEL	CGGAA	CGGAA	-			P-0062067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	156	662	0	ENST00000269305.4:c.1021_1025del	p.Phe341ArgfsTer4	p.F341Rfs*4	ENST00000269305	NM_001126112.2	341	TTCCGa/a																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170011227	170011227	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0062067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	48	542	0	ENST00000295797.4:c.1348A>T	p.Arg450Trp	p.R450W	ENST00000295797	NM_002740.5	450	Agg/Tgg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981908	70981908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	36	902	0	ENST00000276594.2:c.188C>A	p.Ala63Asp	p.A63D	ENST00000276594	NM_024504.3	63	gCc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0062082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	12	316	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0062082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	57	616	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141507	11141507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	50	599	0	ENST00000344626.4:c.3484G>A	p.Gly1162Ser	p.G1162S	ENST00000344626	NM_003072.3	1162	Ggc/Agc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224214	36224214	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774855256		P-0062082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	35	526	0	ENST00000222270.7:c.6764C>T	p.Pro2255Leu	p.P2255L	ENST00000222270	NM_014727.1	2255	cCg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40911143	40911143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370795038		P-0062082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	25	304	2	ENST00000373198.4:c.2162G>A	p.Arg721His	p.R721H	ENST00000373198	NM_133170.3	721	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0062082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	19	509	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ALB	213	MSKCC	GRCh37	4	74274354	74274354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	29	506	0	ENST00000295897.4:c.314G>A	p.Arg105His	p.R105H	ENST00000295897	NM_000477.5	105	cGt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0062082-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	28	518	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934573		P-0062174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	182	458	0	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0062174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	180	539	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0062174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	166	595	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
ALK	238	MSKCC	GRCh37	2	29474041	29474041	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs78723472		P-0062174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	189	604	0	ENST00000389048.3:c.2134G>A	p.Val712Met	p.V712M	ENST00000389048	NM_004304.4	712	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175751	112175752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0062174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	160	575	0	ENST00000257430.4:c.4463dup	p.Leu1488PhefsTer26	p.L1488Ffs*26	ENST00000257430	NM_000038.5	1487	act/acTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913293		P-0062174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	89	413	0	ENST00000371953.3:c.517C>A	p.Arg173Ser	p.R173S	ENST00000371953	NM_000314.4	173	Cgc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0062174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	65	329	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119849	70119849	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062174-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	48	542	0	ENST00000245479.2:c.852del	p.Asn285ThrfsTer98	p.N285Tfs*98	ENST00000245479	NM_000346.3	284	tCc/tc																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0062177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			70	125	497	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749500	41749500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	66	411	0	ENST00000226382.2:c.295C>T	p.Arg99Trp	p.R99W	ENST00000226382	NM_003924.3	99	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767326		P-0062177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			13	74	293	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0062177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			22	151	443	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0062177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			53	114	323	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21348507	21348507	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201159165		P-0062177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	58	678	0	ENST00000215739.8:c.1564G>A	p.Glu522Lys	p.E522K	ENST00000215739	NM_006767.3	522	Gag/Aag																																																																															
AURKA	6790	MSKCC	GRCh37	20	54956521	54956521	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	41	393	0	ENST00000312783.6:c.673C>G	p.Leu225Val	p.L225V	ENST00000312783	NM_198436.1	225	Ctt/Gtt																																																																															
TP63	8626	MSKCC	GRCh37	3	189590707	189590707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	261	572	0	ENST00000264731.3:c.1272G>T	p.Met424Ile	p.M424I	ENST00000264731	NM_003722.4	424	atG/atT																																																																															
APC	324	MSKCC	GRCh37	5	112175474	112175475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAAC			P-0062177-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	72	518	0	ENST00000257430.4:c.4183_4184insAAAC	p.Ser1395LysfsTer4	p.S1395Kfs*4	ENST00000257430	NM_000038.5	1395	agt/aAAACgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0062181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	73	283	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425677	49425677	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0062181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	159	570	0	ENST00000301067.7:c.12811A>G	p.Thr4271Ala	p.T4271A	ENST00000301067	NM_003482.3	4271	Aca/Gca																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931847	39931847	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0062181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	128	427	0	ENST00000378444.4:c.2752del	p.Gln918LysfsTer18	p.Q918Kfs*18	ENST00000378444	NM_001123385.1	918	Caa/aa																																																																															
PARP1	142	MSKCC	GRCh37	1	226564973	226564973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1007	75	502	0	ENST00000366794.5:c.1777G>C	p.Gly593Arg	p.G593R	ENST00000366794	NM_001618.3	593	Ggt/Cgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786202918		P-0062206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	151	311	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857784	9857784	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			961	66	679	0	ENST00000330684.3:c.3617G>C	p.Arg1206Pro	p.R1206P	ENST00000330684	NM_001134407.1	1206	cGa/cCa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688784	47688808	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAGAAATGTTGACAGAATCTTGC	GCCAGAAATGTTGACAGAATCTTGC	-			P-0062206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	155	373	0	ENST00000347630.2:c.492_516del	p.Gln165ArgfsTer4	p.Q165Rfs*4	ENST00000347630	NM_001007230.1	164	gtGCAAGATTCTGTCAACATTTCTGGC/gt																																																																															
TRIP13	9319	MSKCC	GRCh37	5	896831	896831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062206-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			758	63	514	0	ENST00000166345.3:c.310G>A	p.Glu104Lys	p.E104K	ENST00000166345	NM_004237.3	104	Gaa/Aaa																																																																															
MGA	23269	MSKCC	GRCh37	15	42000366	42000366	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0062209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	72	406	0	ENST00000219905.7:c.2385G>A	p.Trp795Ter	p.W795*	ENST00000219905	NM_001164273.1	795	tgG/tgA																																																																															
CDC73	79577	MSKCC	GRCh37	1	193094321	193094321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	111	489	0	ENST00000367435.3:c.211C>T	p.His71Tyr	p.H71Y	ENST00000367435	NM_024529.4	71	Cat/Tat																																																																															
MGA	23269	MSKCC	GRCh37	15	42021360	42021360	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0062209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	76	532	0	ENST00000219905.7:c.3658-2A>G		p.X1220_splice	ENST00000219905	NM_001164273.1	1220																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0062209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	95	380	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448552	89448552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			839	110	618	0	ENST00000336596.2:c.1516G>T	p.Val506Leu	p.V506L	ENST00000336596	NM_005233.5	506	Gta/Tta																																																																															
HGF	3082	MSKCC	GRCh37	7	81340830	81340830	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	55	229	0	ENST00000222390.5:c.1411G>C	p.Gly471Arg	p.G471R	ENST00000222390	NM_000601.4	471	Ggt/Cgt																																																																															
ATRX	546	MSKCC	GRCh37	X	76938041	76938041	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			755	83	577	0	ENST00000373344.5:c.2707del	p.Glu903AsnfsTer2	p.E903Nfs*2	ENST00000373344	NM_000489.3	903	Gaa/aa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs193920894		P-0062210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	281	567	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061207	38061207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	319	788	0	ENST00000250448.2:c.782G>A	p.Arg261His	p.R261H	ENST00000250448	NM_004496.3	261	cGc/cAc																																																																															
MDM4	4194	MSKCC	GRCh37	1	204515968	204515968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	195	342	0	ENST00000367182.3:c.866C>A	p.Ser289Tyr	p.S289Y	ENST00000367182	NM_001278516.1	289	tCc/tAc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060805	38060805	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	361	840	1	ENST00000250448.2:c.1184C>A	p.Ser395Tyr	p.S395Y	ENST00000250448	NM_004496.3	395	tCc/tAc																																																																															
SRC	6714	MSKCC	GRCh37	20	36030884	36030884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062210-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	276	630	1	ENST00000358208.4:c.1163G>A	p.Arg388Gln	p.R388Q	ENST00000358208		388	cGg/cAg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577466	64577466	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062211-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			98	462	828	0	ENST00000337652.1:c.116T>G	p.Leu39Trp	p.L39W	ENST00000337652	NM_130803.2	39	tTg/tGg																																																																															
ATRX	546	MSKCC	GRCh37	X	76939651	76939651	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062211-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			106	354	694	0	ENST00000373344.5:c.1097T>G	p.Met366Arg	p.M366R	ENST00000373344	NM_000489.3	366	aTg/aGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0061296-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			422	117	569	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011200	12011200	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061296-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			200	72	317	0	ENST00000353533.5:c.607G>T	p.Glu203Ter	p.E203*	ENST00000353533	NM_003010.3	203	Gaa/Taa																																																																															
MET	4233	MSKCC	GRCh37	7	116436044	116436044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061296-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			694	143	575	0	ENST00000397752.3:c.4039G>A	p.Glu1347Lys	p.E1347K	ENST00000397752	NM_000245.2	1347	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974769	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061296-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			479	136	609	0	ENST00000304494.5:c.58G>C	p.Ala20Pro	p.A20P	ENST00000304494	NM_000077.4	20	Gcg/Ccg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41400095	41400095	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061296-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			447	45	437	0	ENST00000373198.4:c.664C>A	p.His222Asn	p.H222N	ENST00000373198	NM_133170.3	222	Cat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0061296-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			261	122	363	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724635	112724635	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061296-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			502	59	456	0	ENST00000369452.4:c.519G>C	p.Met173Ile	p.M173I	ENST00000369452	NM_007373.3	173	atG/atC																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125496666	125496666	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0061296-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			538	97	476	0	ENST00000428830.2:c.3G>T	p.Met1?	p.M1?	ENST00000428830	NM_001114121.2	1	atG/atT																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856242	111856242	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061296-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			466	62	501	0	ENST00000341259.2:c.293C>G	p.Ala98Gly	p.A98G	ENST00000341259	NM_005475.2	98	gCc/gGc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618944	37618944	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750404979		P-0061296-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			697	222	610	1	ENST00000447079.4:c.620C>T	p.Pro207Leu	p.P207L	ENST00000447079	NM_015083.1	207	cCc/cTc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2180756	2180756	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0061296-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			205	50	238	0	ENST00000398665.3:c.125+1G>A		p.X42_splice	ENST00000398665	NM_032482.2	42																																																																																
TET2	54790	MSKCC	GRCh37	4	106156393	106156393	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061296-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			527	99	581	0	ENST00000380013.4:c.1294G>C	p.Glu432Gln	p.E432Q	ENST00000380013	NM_001127208.2	432	Gaa/Caa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176631179	176631179	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061296-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			413	161	554	0	ENST00000439151.2:c.1122G>C	p.Glu374Asp	p.E374D	ENST00000439151	NM_022455.4	374	gaG/gaC																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8517906	8517906	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061296-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			410	22	390	0	ENST00000356435.5:c.1485del	p.Phe495LeufsTer26	p.F495Lfs*26	ENST00000356435		495	ttT/tt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1177782647		P-0061433-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	115	497	0	ENST00000326873.7:c.842dup	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0061433-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			273	153	577	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0061433-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			175	92	248	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600011	10600029	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCATAGATACAGTTGT	GCAGCATAGATACAGTTGT	-			P-0061433-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			218	107	478	0	ENST00000171111.5:c.1547_1565del	p.His516LeufsTer10	p.H516Lfs*10	ENST00000171111	NM_203500.1	516	cACAACTGTATCTATGCTGCt/ct																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134230	11134230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1227826852		P-0061433-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			152	92	386	0	ENST00000344626.4:c.2896C>T	p.Arg966Trp	p.R966W	ENST00000344626	NM_003072.3	966	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261830	16261830	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061433-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			251	115	593	0	ENST00000375759.3:c.9095G>C	p.Gly3032Ala	p.G3032A	ENST00000375759	NM_015001.2	3032	gGg/gCg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981845	201981845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061433-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			202	127	488	0	ENST00000359651.3:c.556G>T	p.Ala186Ser	p.A186S	ENST00000359651		186	Gca/Tca																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748068	41748068	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061433-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			96	61	274	0	ENST00000226382.2:c.701del	p.Gly234AlafsTer75	p.G234Afs*75	ENST00000226382	NM_003924.3	234	gGc/gc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106554942	106554942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061433-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			287	73	438	0	ENST00000369096.4:c.2059C>T	p.His687Tyr	p.H687Y	ENST00000369096	NM_001198.3	687	Cac/Tac																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2083346	2083346	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0061433-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			186	131	263	0	ENST00000349721.2:c.2349-1G>T		p.X783_splice	ENST00000349721	NM_003070.3	783																																																																																
RBM10	8241	MSKCC	GRCh37	X	47034491	47034491	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0061433-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			199	46	333	0	ENST00000329236.7:c.345G>C	p.Gln115His	p.Q115H	ENST00000329236	NM_001204466.1	115	caG/caC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538922	187538922	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0061711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	173	459	0	ENST00000441802.2:c.8818T>G	p.Leu2940Val	p.L2940V	ENST00000441802	NM_005245.3	2940	Tta/Gta																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0061711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	277	446	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038519	47038519	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	162	231	0	ENST00000329236.7:c.450del	p.Phe150LeufsTer39	p.F150Lfs*39	ENST00000329236	NM_001204466.1	150	ttC/tt																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152864456	152864456	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	81	193	1	ENST00000406277.2:c.70G>C	p.Val24Leu	p.V24L	ENST00000406277	NM_152274.4	24	Gtg/Ctg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029395	16029395	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0061712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	180	184	0	ENST00000268712.3:c.1634+1G>A		p.X545_splice	ENST00000268712	NM_006311.3	545																																																																																
GATA3	2625	MSKCC	GRCh37	10	8111462	8111463	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0061712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	408	532	0	ENST00000346208.3:c.949dup	p.Cys317LeufsTer35	p.C317Lfs*35	ENST00000346208		316	-/T																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222062	2222062	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061712-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			880	88	677	0	ENST00000398665.3:c.2894T>C	p.Leu965Ser	p.L965S	ENST00000398665	NM_032482.2	965	tTg/tCg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			878	98	845	0	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120510155	120510155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			747	80	617	0	ENST00000256646.2:c.1354C>T	p.Arg452Cys	p.R452C	ENST00000256646	NM_024408.3	452	Cgt/Tgt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3656600	3656600	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs575953567		P-0061939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			878	100	680	2	ENST00000294008.3:c.635G>A	p.Arg212Gln	p.R212Q	ENST00000294008	NM_032444.2	212	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs757274881		P-0061939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			787	177	737	0	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0061939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			758	72	691	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276903	15276903	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0061939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			754	88	623	0	ENST00000263388.2:c.5363-1G>T		p.X1788_splice	ENST00000263388	NM_000435.2	1788																																																																																
PAK7	57144	MSKCC	GRCh37	20	9561254	9561254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	111	539	0	ENST00000353224.5:c.528G>T	p.Lys176Asn	p.K176N	ENST00000353224	NM_177990.2	176	aaG/aaT																																																																															
KDR	3791	MSKCC	GRCh37	4	55961059	55961059	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs530419081		P-0061939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	61	500	0	ENST00000263923.4:c.2881C>T	p.Arg961Trp	p.R961W	ENST00000263923	NM_002253.2	961	Cgg/Tgg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738424	145738424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1167531855		P-0061939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1015	83	798	0	ENST00000428558.2:c.2561C>G	p.Thr854Ser	p.T854S	ENST00000428558	NM_004260.3	854	aCc/aGc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0061944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	88	399	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0061944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	157	594	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0061944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	175	476	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	125	481	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180055919	180055919	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1368679940		P-0061944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	201	488	0	ENST00000261937.6:c.1066G>A	p.Val356Met	p.V356M	ENST00000261937	NM_182925.4	356	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578181	7578192	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCTCATAG	GGCGGCTCATAG	-	rs876660749		P-0061944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	250	580	0	ENST00000269305.4:c.657_668del	p.Tyr220_Pro223del	p.Y220_P223del	ENST00000269305	NM_001126112.2	219	ccCTATGAGCCGCCt/cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0061945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	205	451	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573639	48573639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	111	480	0	ENST00000342988.3:c.223C>T	p.Gln75Ter	p.Q75*	ENST00000342988	NM_005359.5	75	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0061945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	292	301	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419852	41419853	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAAAGT			P-0061945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	231	475	0	ENST00000373198.4:c.463_468dup	p.Thr155_Phe156dup	p.T155_F156dup	ENST00000373198	NM_133170.3	155	-/ACTTTC																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	24	521	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	254	662	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112173926	112173926	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1060503287		P-0061946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	182	542	0	ENST00000257430.4:c.2635C>T	p.Gln879Ter	p.Q879*	ENST00000257430	NM_000038.5	879	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27102107	27102107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	215	539	0	ENST00000324856.7:c.5033C>T	p.Ser1678Phe	p.S1678F	ENST00000324856	NM_006015.4	1678	tCt/tTt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739716	41739716	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749750926		P-0061946-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			846	83	523	0	ENST00000242208.4:c.257C>T	p.Ala86Val	p.A86V	ENST00000242208	NM_002192.2	86	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0061951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	34	803	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913500		P-0061951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	25	492	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0061951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	20	362	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602722	10602722	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs773547929		P-0061951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	25	733	1	ENST00000171111.5:c.856C>T	p.Gln286Ter	p.Q286*	ENST00000171111	NM_203500.1	286	Cag/Tag																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21345927	21345927	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	27	692	0	ENST00000215739.8:c.802A>T	p.Ile268Phe	p.I268F	ENST00000215739	NM_006767.3	268	Atc/Ttc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79950714	79950730	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCGCAGCGGCCGCAG	GGCCGCAGCGGCCGCAG	-			P-0061951-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	21	599	0	ENST00000265081.6:c.168_184del	p.Ala58ProfsTer21	p.A58Pfs*21	ENST00000265081	NM_002439.4	56	gcGGCCGCAGCGGCCGCAGcg/gccg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1239985410		P-0061965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	121	650	0	ENST00000171111.5:c.959G>T	p.Arg320Leu	p.R320L	ENST00000171111	NM_203500.1	320	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0061965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	175	577	0	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864186	117864186	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0061965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	30	424	0	ENST00000297338.2:c.1470+1G>A		p.X490_splice	ENST00000297338	NM_006265.2	490																																																																																
RASA1	5921	MSKCC	GRCh37	5	86564809	86564809	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0061965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	88	602	0	ENST00000274376.6:c.539+2T>A		p.X180_splice	ENST00000274376	NM_002890.2	180																																																																																
HNF1A	6927	MSKCC	GRCh37	12	121438955	121438955	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	97	578	0	ENST00000257555.6:c.1856A>G	p.Glu619Gly	p.E619G	ENST00000257555		619	gAg/gGg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121438963	121438963	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	96	586	0	ENST00000257555.6:c.1864A>T	p.Ile622Phe	p.I622F	ENST00000257555		622	Atc/Ttc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26959398	26959398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	25	423	0	ENST00000381527.3:c.565G>A	p.Asp189Asn	p.D189N	ENST00000381527	NM_001260.1	189	Gat/Aat																																																																															
NF1	4763	MSKCC	GRCh37	17	29654737	29654737	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs771529172		P-0061965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	183	546	0	ENST00000358273.4:c.5489G>T	p.Arg1830Leu	p.R1830L	ENST00000358273	NM_001042492.2	1830	cGc/cTc																																																																															
ALK	238	MSKCC	GRCh37	2	29416497	29416497	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	50	649	0	ENST00000389048.3:c.4456C>A	p.Pro1486Thr	p.P1486T	ENST00000389048	NM_004304.4	1486	Cct/Act																																																																															
ALK	238	MSKCC	GRCh37	2	29917833	29917833	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	93	491	0	ENST00000389048.3:c.835C>A	p.Pro279Thr	p.P279T	ENST00000389048	NM_004304.4	279	Cca/Aca																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660420	227660420	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	47	669	0	ENST00000305123.5:c.3035A>G	p.Tyr1012Cys	p.Y1012C	ENST00000305123	NM_005544.2	1012	tAt/tGt																																																																															
HGF	3082	MSKCC	GRCh37	7	81355266	81355266	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	77	431	0	ENST00000222390.5:c.1108C>A	p.Pro370Thr	p.P370T	ENST00000222390	NM_000601.4	370	Cca/Aca																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045755	47045755	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782214369		P-0061965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	102	726	0	ENST00000329236.7:c.2402G>A	p.Arg801His	p.R801H	ENST00000329236	NM_001204466.1	801	cGc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70341578	70341578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061965-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	92	563	0	ENST00000374080.3:c.1013C>A	p.Thr338Asn	p.T338N	ENST00000374080		338	aCt/aAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0061967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	341	455	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67197052	67197052	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	404	444	0	ENST00000312629.5:c.295A>G	p.Lys99Glu	p.K99E	ENST00000312629	NM_003952.2	99	Aaa/Gaa																																																																															
MGA	23269	MSKCC	GRCh37	15	42041898	42041898	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0061967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	179	557	0	ENST00000219905.7:c.6095del	p.Leu2032TrpfsTer70	p.L2032Wfs*70	ENST00000219905	NM_001164273.1	2031	caT/ca																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51503150	51503150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	196	480	0	ENST00000260433.2:c.1367G>A	p.Arg456Lys	p.R456K	ENST00000260433		456	aGa/aAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830321	72830321	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1464698105		P-0061967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	477	644	0	ENST00000268489.5:c.6260A>T	p.Gln2087Leu	p.Q2087L	ENST00000268489	NM_006885.3	2087	cAg/cTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346071	89346071	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	61	130	0	ENST00000301030.4:c.6879C>A	p.Asp2293Glu	p.D2293E	ENST00000301030	NM_001256183.1	2293	gaC/gaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7574019	7574020	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0061967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	348	393	0	ENST00000269305.4:c.1007dup	p.Arg337AlafsTer10	p.R337Afs*10	ENST00000269305	NM_001126112.2	336	gag/gaAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16097859	16097860	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0061967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			56	145	218	0	ENST00000268712.3:c.24dup	p.Asn9GlnfsTer34	p.N9Qfs*34	ENST00000268712	NM_006311.3	8	-/C																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733058	74733058	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	177	543	1	ENST00000359995.5:c.185T>C	p.Phe62Ser	p.F62S	ENST00000359995	NM_001195427.1	62	tTt/tCt																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626928	14626934	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGTAT	CGGGTAT	-			P-0061967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			916	261	626	0	ENST00000254322.2:c.841_847del	p.Ile281SerfsTer38	p.I281Sfs*38	ENST00000254322	NM_006145.1	281	ATACCCGtc/tc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39278398	39278398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	79	335	0	ENST00000402219.2:c.751G>T	p.Asp251Tyr	p.D251Y	ENST00000402219	NM_005633.3	251	Gat/Tat																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504298	186504298	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0061967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			78	203	286	0	ENST00000323963.5:c.635T>G	p.Leu212Trp	p.L212W	ENST00000323963		212	tTg/tGg																																																																															
REST	5978	MSKCC	GRCh37	4	57777588	57777588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	363	515	0	ENST00000309042.7:c.784C>T	p.His262Tyr	p.H262Y	ENST00000309042	NM_005612.4	262	Cac/Tac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538337	187538337	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0061967-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	104	381	0	ENST00000441802.2:c.8897A>C	p.Gln2966Pro	p.Q2966P	ENST00000441802	NM_005245.3	2966	cAg/cCg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266709	198266709	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0061999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	102	392	0	ENST00000335508.6:c.2223G>C	p.Lys741Asn	p.K741N	ENST00000335508	NM_012433.2	741	aaG/aaC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427058	49427059	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0061999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	125	624	0	ENST00000301067.7:c.11429dup	p.Leu3810PhefsTer202	p.L3810Ffs*202	ENST00000301067	NM_003482.3	3810	ttg/ttTg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672225	30672225	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0061999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			868	182	800	0	ENST00000376406.3:c.4735C>T	p.Gln1579Ter	p.Q1579*	ENST00000376406	NM_014641.2	1579	Cag/Tag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389407	8389407	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0061999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	71	284	0	ENST00000356435.5:c.4211G>A	p.Gly1404Glu	p.G1404E	ENST00000356435		1404	gGg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0062001-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	191	639	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35875645	35875645	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201449880		P-0062001-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	49	375	0	ENST00000303115.3:c.832G>A	p.Asp278Asn	p.D278N	ENST00000303115	NM_002185.3	278	Gat/Aat																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89457269	89457269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062001-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	57	357	0	ENST00000336596.2:c.1750G>A	p.Gly584Ser	p.G584S	ENST00000336596	NM_005233.5	584	Ggc/Agc																																																																															
RAC1	5879	MSKCC	GRCh37	7	6431662	6431662	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062001-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	78	289	0	ENST00000356142.4:c.215A>G	p.Tyr72Cys	p.Y72C	ENST00000356142	NM_018890.3	72	tAt/tGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242482	55242506	+	protein_altering_variant	In_Frame_Del	DEL	CATCTCCGAAAGCCAACAAGGAAAT	CATCTCCGAAAGCCAACAAGGAAAT	G			P-0062001-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	90	403	0	ENST00000275493.2:c.2252_2276delinsG	p.Thr751_Ile759delinsSer	p.T751_I759delinsS	ENST00000275493	NM_005228.3	751	aCATCTCCGAAAGCCAACAAGGAAATc/aGc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26978211	26978211	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1448365337		P-0062013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	57	270	1	ENST00000381527.3:c.1388G>A	p.Arg463Gln	p.R463Q	ENST00000381527	NM_001260.1	463	cGg/cAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117878	70117888	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCAGGCGGC	GCGCAGGCGGC	-			P-0062013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	314	552	0	ENST00000245479.2:c.353_363del	p.Ala118GlufsTer130	p.A118Efs*130	ENST00000245479	NM_000346.3	116	GCGCAGGCGGCg/g																																																																															
MSH2	4436	MSKCC	GRCh37	2	47635569	47635569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0062013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	173	295	0	ENST00000233146.2:c.241A>G	p.Ser81Gly	p.S81G	ENST00000233146	NM_000251.2	81	Agt/Ggt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125352	47125352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	80	530	0	ENST00000409792.3:c.5918C>T	p.Pro1973Leu	p.P1973L	ENST00000409792	NM_014159.6	1973	cCt/cTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0062013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	190	430	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0062013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	95	559	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175755	112175756	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0062013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	159	523	0	ENST00000257430.4:c.4466dup	p.Leu1489PhefsTer25	p.L1489Ffs*25	ENST00000257430	NM_000038.5	1488	-/T																																																																															
SMO	6608	MSKCC	GRCh37	7	128845101	128845101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201246258		P-0062013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	68	463	0	ENST00000249373.3:c.595C>T	p.Arg199Trp	p.R199W	ENST00000249373	NM_005631.4	199	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0062016-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	141	475	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0062016-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	52	410	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880957	134880957	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770406411		P-0062016-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	67	380	0	ENST00000398015.3:c.1520G>A	p.Arg507His	p.R507H	ENST00000398015	NM_004441.4	507	cGt/cAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295774	212295774	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754127388		P-0062016-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	51	341	0	ENST00000342788.4:c.2539C>T	p.Arg847Cys	p.R847C	ENST00000342788	NM_005235.2	847	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112174454	112174455	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0062016-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	119	409	0	ENST00000257430.4:c.3164dup	p.Ile1056AsnfsTer4	p.I1056Nfs*4	ENST00000257430	NM_000038.5	1055	ata/aTta																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46543236	46543236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	90	337	0	ENST00000262741.5:c.265G>T	p.Val89Phe	p.V89F	ENST00000262741	NM_003629.3	89	Gtc/Ttc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49280978	49280978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	82	343	0	ENST00000282018.3:c.25C>A	p.Gln9Lys	p.Q9K	ENST00000282018	NM_020377.2	9	Caa/Aaa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103519063	103519063	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0062019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			749	128	382	0	ENST00000355739.4:c.2401G>C	p.Asp801His	p.D801H	ENST00000355739	NM_000123.3	801	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579389	7579390	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGAAGGGACAGAAGATGACAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCC			P-0062019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			897	98	560	0	ENST00000269305.4:c.246_297dup	p.Gln100GlyfsTer66	p.Q100Gfs*66	ENST00000269305	NM_001126112.2	99	-/GGCGGCCCCTGCACCAGCCCCCTCCTGGCCCCTGTCATCTTCTGTCCCTTCC																																																																															
ATRX	546	MSKCC	GRCh37	X	76778804	76778804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0062019-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	31	378	0	ENST00000373344.5:c.6775G>T	p.Asp2259Tyr	p.D2259Y	ENST00000373344	NM_000489.3	2259	Gac/Tac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0062020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	120	379	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0062020-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	68	486	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0061812-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			534	204	557	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220433	1220433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061812-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	304	580	0	ENST00000326873.7:c.526G>T	p.Asp176Tyr	p.D176Y	ENST00000326873	NM_000455.4	176	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0061812-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	126	327	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156837920	156837920	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061812-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			523	182	615	0	ENST00000524377.1:c.453C>A	p.His151Gln	p.H151Q	ENST00000524377	NM_002529.3	151	caC/caA																																																																															
BCL6	604	MSKCC	GRCh37	3	187449566	187449566	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061812-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			820	238	596	0	ENST00000232014.4:c.314T>C	p.Val105Ala	p.V105A	ENST00000232014	NM_001130845.1	105	gTg/gCg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231671	66231671	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061812-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	39	397	2	ENST00000273854.3:c.2029A>G	p.Ile677Val	p.I677V	ENST00000273854	NM_004439.5	677	Att/Gtt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103510743	103510743	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	72	421	0	ENST00000355739.4:c.647G>T	p.Arg216Ile	p.R216I	ENST00000355739	NM_000123.3	216	aGa/aTa																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362500	40362500	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1219718677		P-0061976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	60	439	0	ENST00000293328.3:c.1696C>T	p.Arg566Trp	p.R566W	ENST00000293328	NM_012448.3	566	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202911	16202911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	66	526	0	ENST00000375759.3:c.619G>A	p.Glu207Lys	p.E207K	ENST00000375759	NM_015001.2	207	Gag/Aag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134270	2134270	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	45	683	0	ENST00000219476.3:c.4048del	p.Glu1350ArgfsTer33	p.E1350Rfs*33	ENST00000219476	NM_000548.3	1349	gcG/gc																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652106	36652107	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0061976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	69	628	0	ENST00000244741.5:c.229dup	p.Tyr77LeufsTer12	p.Y77Lfs*12	ENST00000244741	NM_000389.4	76	-/T																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577546	64577549	+	protein_altering_variant	In_Frame_Del	DEL	CGGG	CGGG	T			P-0061976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	51	497	0	ENST00000337652.1:c.33_36delinsA	p.Phe11_Pro12delinsLeu	p.F11_P12delinsL	ENST00000337652	NM_130803.2	11	ttCCCG/ttA																																																																															
ELF3	1999	MSKCC	GRCh37	1	201980418	201980419	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0061981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	82	613	0	ENST00000359651.3:c.155dup	p.Thr54TyrfsTer38	p.T54Yfs*38	ENST00000359651		52	gag/gAag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0061981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	100	309	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0061981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	217	574	1	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395101	139395101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777423973		P-0061981-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	95	650	4	ENST00000277541.6:c.5837G>A	p.Arg1946His	p.R1946H	ENST00000277541	NM_017617.3	1946	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0062030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	70	537	1	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380276	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC			P-0062030-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	76	460	0	ENST00000256078.4:c.182_183delinsGG	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAA/cGG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0062035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	36	305	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1223063	1223097	+	frameshift_variant	Frame_Shift_Del	DEL	AGCATGACTGTGGTGCCGTACTTGGAGGACCTGCA	AGCATGACTGTGGTGCCGTACTTGGAGGACCTGCA	-			P-0062035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	81	603	0	ENST00000326873.7:c.1000_1034del	p.Ser334ArgfsTer14	p.S334Rfs*14	ENST00000326873	NM_000455.4	334	AGCATGACTGTGGTGCCGTACTTGGAGGACCTGCAc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0062037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	529	828	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098973	178098973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	390	489	0	ENST00000397062.3:c.72G>C	p.Trp24Cys	p.W24C	ENST00000397062	NM_006164.4	24	tgG/tgC																																																																															
NBN	4683	MSKCC	GRCh37	8	90971041	90971041	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200297914		P-0062037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1008	93	569	0	ENST00000265433.3:c.1036G>A	p.Val346Met	p.V346M	ENST00000265433	NM_002485.4	346	Gtg/Atg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022423	12022423	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0062037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	161	1029	0	ENST00000396373.4:c.529G>T	p.Glu177Ter	p.E177*	ENST00000396373	NM_001987.4	177	Gaa/Taa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971060	21971060	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	284	700	0	ENST00000304494.5:c.298del	p.Ala100ProfsTer46	p.A100Pfs*46	ENST00000304494	NM_000077.4	100	Gcc/cc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131953979	131953979	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	276	216	0	ENST00000265335.6:c.3382C>G	p.Leu1128Val	p.L1128V	ENST00000265335		1128	Ctt/Gtt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023738	27023757	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGGCGGGGGAACTCCCCA	GCCGGCGGGGGAACTCCCCA	-			P-0062037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	173	762	0	ENST00000324856.7:c.847_866del	p.Gly283HisfsTer110	p.G283Hfs*110	ENST00000324856	NM_006015.4	282	GCCGGCGGGGGAACTCCCCAg/g																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729730	162729730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0062037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	413	771	0	ENST00000367921.3:c.816G>A	p.Met272Ile	p.M272I	ENST00000367921	NM_006182.2	272	atG/atA																																																																															
DDR2	4921	MSKCC	GRCh37	1	162737133	162737133	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0062037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	225	694	0	ENST00000367921.3:c.1277A>C	p.Gln426Pro	p.Q426P	ENST00000367921	NM_006182.2	426	cAg/cCg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998276	100998276	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	161	623	0	ENST00000325455.5:c.1526C>A	p.Pro509His	p.P509H	ENST00000325455	NM_001202474.3	509	cCc/cAc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226300	2226300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0062037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	259	865	0	ENST00000326181.6:c.1915del	p.Leu639CysfsTer27	p.L639Cfs*27	ENST00000326181	NM_032271.2	638	aCc/ac																																																																															
MALT1	10892	MSKCC	GRCh37	18	56402469	56402469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	205	319	0	ENST00000348428.3:c.1511C>T	p.Ser504Phe	p.S504F	ENST00000348428	NM_006785.3	504	tCt/tTt																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47425290	47425290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	303	784	0	ENST00000404338.3:c.3358C>T	p.Arg1120Trp	p.R1120W	ENST00000404338	NM_004491.4	1120	Cgg/Tgg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52723442	52723442	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0062037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	230	574	0	ENST00000322088.6:c.1303G>T	p.Gly435Ter	p.G435*	ENST00000322088	NM_014225.5	435	Gga/Tga																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99155369	99155369	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0062037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	231	551	0	ENST00000074304.5:c.595G>T	p.Asp199Tyr	p.D199Y	ENST00000074304	NM_001134224.1	199	Gat/Tat																																																																															
PAK7	57144	MSKCC	GRCh37	20	9543673	9543673	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0062037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	183	503	0	ENST00000353224.5:c.1483-2A>T		p.X495_splice	ENST00000353224	NM_177990.2	495																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153332904	153332914	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCTCCAGTT	AGCCTCCAGTT	-			P-0062037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	278	611	0	ENST00000281708.4:c.42_52del	p.Thr15SerfsTer4	p.T15Sfs*4	ENST00000281708	NM_033632.3	14	cgAACTGGAGGCTct/cgct																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878944	151878944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0062040-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	69	644	0	ENST00000262189.6:c.6001G>C	p.Ala2001Pro	p.A2001P	ENST00000262189	NM_170606.2	2001	Gct/Cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0001817-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			321	18	358	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0001817-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			436	20	376	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519912		P-0001822-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			204	365	316	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0003185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	235	265	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111168	193111168	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1452051467		P-0003185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	165	237	0	ENST00000367435.3:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000367435	NM_024529.4	234	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs786201838		P-0003940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	77	360	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																															
SDHB	6390	MSKCC	GRCh37	1	17355148	17355148	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs978525560		P-0003940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			665	118	339	0	ENST00000375499.3:c.370G>T	p.Val124Phe	p.V124F	ENST00000375499	NM_003000.2	124	Gtc/Ttc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527598	157527598	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0003940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	73	230	0	ENST00000346085.5:c.5323A>T	p.Lys1775Ter	p.K1775*	ENST00000346085	NM_020732.3	1775	Aag/Tag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2202730	2202730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	75	420	0	ENST00000398665.3:c.739C>T	p.Pro247Ser	p.P247S	ENST00000398665	NM_032482.2	247	Cct/Tct																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67196600	67196601	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0003940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			878	80	265	0	ENST00000312629.5:c.131_132del	p.His44LeufsTer2	p.H44Lfs*2	ENST00000312629	NM_003952.2	43	ggACac/ggac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0004494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	116	448	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0004494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	14	489	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0004494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	97	361	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0004494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	111	409	1	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198268383	198268383	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1172363633		P-0004494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	120	465	1	ENST00000335508.6:c.1645C>T	p.Arg549Cys	p.R549C	ENST00000335508	NM_012433.2	549	Cgt/Tgt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149457764	149457764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	45	299	0	ENST00000286301.3:c.640C>T	p.Arg214Trp	p.R214W	ENST00000286301	NM_005211.3	214	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108216611	108216611	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201958469		P-0004494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	81	410	0	ENST00000278616.4:c.8560C>T	p.Arg2854Cys	p.R2854C	ENST00000278616	NM_000051.3	2854	Cgc/Tgc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041046	29041046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	108	370	0	ENST00000282397.4:c.382A>G	p.Ile128Val	p.I128V	ENST00000282397	NM_002019.4	128	Att/Gtt																																																																															
NF1	4763	MSKCC	GRCh37	17	29486104	29486104	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	189	355	0	ENST00000358273.4:c.282del	p.Ala95LeufsTer8	p.A95Lfs*8	ENST00000358273	NM_001042492.2	94	cTt/ct																																																																															
APC	324	MSKCC	GRCh37	5	112175595	112175613	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGTAAAACACCTCCACC	GAAGTAAAACACCTCCACC	-			P-0004494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	98	536	1	ENST00000257430.4:c.4304_4322del	p.Arg1435AsnfsTer32	p.R1435Nfs*32	ENST00000257430	NM_000038.5	1435	aGAAGTAAAACACCTCCACCa/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	365	297	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0005242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	298	219	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255790	16255790	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	222	481	0	ENST00000375759.3:c.3055C>T	p.Gln1019Ter	p.Q1019*	ENST00000375759	NM_015001.2	1019	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105727	27105727	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772578230		P-0005242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	244	462	2	ENST00000324856.7:c.5338G>A	p.Glu1780Lys	p.E1780K	ENST00000324856	NM_006015.4	1780	Gaa/Aaa																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936379	49936379	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	608	725	0	ENST00000296474.3:c.1469C>A	p.Ser490Ter	p.S490*	ENST00000296474	NM_002447.2	490	tCa/tAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178143	56178143	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	176	427	2	ENST00000399503.3:c.3116C>A	p.Ser1039Ter	p.S1039*	ENST00000399503	NM_005921.1	1039	tCa/tAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874386	151874386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	411	438	0	ENST00000262189.6:c.8152G>A	p.Glu2718Lys	p.E2718K	ENST00000262189	NM_170606.2	2718	Gaa/Aaa																																																																															
POLE	5426	MSKCC	GRCh37	12	133202720	133202720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	284	590	0	ENST00000320574.5:c.6514G>C	p.Asp2172His	p.D2172H	ENST00000320574	NM_006231.2	2172	Gac/Cac																																																																															
POLE	5426	MSKCC	GRCh37	12	133237716	133237716	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	217	584	1	ENST00000320574.5:c.2899G>C	p.Glu967Gln	p.E967Q	ENST00000320574	NM_006231.2	967	Gag/Cag																																																																															
FLT1	2321	MSKCC	GRCh37	13	28901682	28901682	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	170	394	0	ENST00000282397.4:c.2713C>G	p.Leu905Val	p.L905V	ENST00000282397	NM_002019.4	905	Ctg/Gtg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482437	56482437	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	88	457	0	ENST00000267101.3:c.985A>G	p.Lys329Glu	p.K329E	ENST00000267101	NM_001982.3	329	Aaa/Gaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0006704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	69	431	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3790455	3790455	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs587783490		P-0006704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	155	488	1	ENST00000262367.5:c.4078C>T	p.Arg1360Ter	p.R1360*	ENST00000262367	NM_004380.2	1360	Cga/Tga																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119582302	119582302	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	232	480	0	ENST00000316626.5:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000316626		367	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174438	112174438	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs863225340		P-0006704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	152	491	1	ENST00000257430.4:c.3147G>A	p.Trp1049Ter	p.W1049*	ENST00000257430	NM_000038.5	1049	tgG/tgA																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225411	26225411	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1241	262	792	0	ENST00000360408.1:c.29A>G	p.Lys10Arg	p.K10R	ENST00000360408	NM_003532.2	10	aAa/aGa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138083	64138083	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777650305		P-0006704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	151	365	0	ENST00000334205.4:c.2006G>A	p.Arg669Gln	p.R669Q	ENST00000334205	NM_003942.2	669	cGg/cAg																																																																															
MED12	9968	MSKCC	GRCh37	X	70344938	70344938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	139	665	0	ENST00000374080.3:c.2168G>T	p.Gly723Val	p.G723V	ENST00000374080		723	gGg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175508	112175509	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0006704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	70	432	0	ENST00000257430.4:c.4219_4220del	p.Ser1407Ter	p.S1407*	ENST00000257430	NM_000038.5	1406	cAG/c																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115712	8115875	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTCCTCCCTGAGCCACATCTCG	CCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTCCTCCCTGAGCCACATCTCG	-			P-0006847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	98	313	0	ENST00000346208.3:c.1062_1225del	p.Thr355GlnfsTer97	p.T355Qfs*97	ENST00000346208		353	cCCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTCCTCCCTGAGCCACATCTCG/c																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38274827	38274827	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	205	284	0	ENST00000425967.3:c.1753G>C	p.Asp585His	p.D585H	ENST00000425967	NM_001174067.1	585	Gat/Cat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057999	27058000	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCTCGACGCTCTC			P-0006847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	77	197	0	ENST00000324856.7:c.1710_1723dup	p.Gln575ProfsTer49	p.Q575Pfs*49	ENST00000324856	NM_006015.4	569	-/CCCTCGACGCTCTC																																																																															
CD276	80381	MSKCC	GRCh37	15	73995319	73995319	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148316620		P-0006931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	18	165	0	ENST00000318443.5:c.625C>T	p.Arg209Trp	p.R209W	ENST00000318443	NM_001024736.1	209	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175746	112175746	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	377	404	0	ENST00000257430.4:c.4455del	p.Asp1486IlefsTer21	p.D1486Ifs*21	ENST00000257430	NM_000038.5	1485	gcT/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0007135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	162	417	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0007135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	234	449	2	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
SF3B1	23451	MSKCC	GRCh37	2	198283245	198283245	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	32	472	0	ENST00000335508.6:c.483G>C	p.Leu161Phe	p.L161F	ENST00000335508	NM_012433.2	161	ttG/ttC																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298129	15298129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	40	507	2	ENST00000263388.2:c.1627G>A	p.Asp543Asn	p.D543N	ENST00000263388	NM_000435.2	543	Gat/Aat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0007745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	262	367	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
APC	324	MSKCC	GRCh37	5	112175720	112175720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	264	327	0	ENST00000257430.4:c.4429C>T	p.Gln1477Ter	p.Q1477*	ENST00000257430	NM_000038.5	1477	Cag/Tag																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589623	67589634	+	inframe_deletion	In_Frame_Del	DEL	ATATGATAGATT	ATATGATAGATT	-			P-0007745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	115	289	0	ENST00000274335.5:c.1392_1403del	p.Asp464_Tyr467del	p.D464_Y467del	ENST00000274335		462	gaATATGATAGATTa/gaa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0008155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	162	246	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0008155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	369	340	1	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916927	178916933	+	protein_altering_variant	In_Frame_Del	DEL	TAGGCAA	TAGGCAA	G			P-0008155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	615	472	0	ENST00000263967.3:c.314_320delinsG	p.Val105_Asn107delinsGly	p.V105_N107delinsG	ENST00000263967	NM_006218.2	105	gTAGGCAAc/gGc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs869025608		P-0008404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	52	428	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921551	178921551	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			44	77	385	0	ENST00000263967.3:c.1033A>T	p.Asn345Tyr	p.N345Y	ENST00000263967	NM_006218.2	345	Aat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			22	69	385	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																															
BCL6	604	MSKCC	GRCh37	3	187449671	187449671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			66	60	406	0	ENST00000232014.4:c.209G>A	p.Ser70Asn	p.S70N	ENST00000232014	NM_001130845.1	70	aGt/aAt																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202292	138202292	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			13	33	323	0	ENST00000237289.4:c.2209C>T	p.Gln737Ter	p.Q737*	ENST00000237289	NM_001270507.1	737	Cag/Tag																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271208	38271208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765900637		P-0008404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			74	39	249	1	ENST00000425967.3:c.2500G>A	p.Glu834Lys	p.E834K	ENST00000425967	NM_001174067.1	834	Gag/Aag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18499623	18499623	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	79	601	0	ENST00000266497.5:c.1478T>A	p.Leu493Gln	p.L493Q	ENST00000266497		493	cTa/cAa																																																																															
POLE	5426	MSKCC	GRCh37	12	133202293	133202293	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1220509815		P-0008404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			18	34	415	0	ENST00000320574.5:c.6595A>T	p.Ile2199Phe	p.I2199F	ENST00000320574	NM_006231.2	2199	Atc/Ttc																																																																															
BLM	641	MSKCC	GRCh37	15	91337474	91337474	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	28	468	0	ENST00000355112.3:c.3097A>G	p.Ile1033Val	p.I1033V	ENST00000355112	NM_000057.2	1033	Ata/Gta																																																																															
CCNE1	898	MSKCC	GRCh37	19	30314616	30314616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			21	53	384	0	ENST00000262643.3:c.1165C>T	p.Leu389Phe	p.L389F	ENST00000262643	NM_001238.2	389	Ctc/Ttc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220394	1220394	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	546	419	1	ENST00000326873.7:c.488del	p.Gly163AlafsTer124	p.G163Afs*124	ENST00000326873	NM_000455.4	163	Ggc/gc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602570	10602587	+	frameshift_variant	Frame_Shift_Del	DEL	TCGGAAGTAGCCGCCCGC	TCGGAAGTAGCCGCCCGC	CCTT			P-0008404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	486	347	0	ENST00000171111.5:c.991_1008delinsAAGG	p.Ala331LysfsTer14	p.A331Kfs*14	ENST00000171111	NM_203500.1	331	GCGGGCGGCTACTTCCGA/AAGG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0008423-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	263	531	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376093	225376093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008423-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			604	127	566	1	ENST00000264414.4:c.861G>A	p.Met287Ile	p.M287I	ENST00000264414	NM_003590.4	287	atG/atA																																																																															
ALK	238	MSKCC	GRCh37	2	29498023	29498023	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs758860363		P-0008423-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			718	194	586	1	ENST00000389048.3:c.1983C>A	p.Asn661Lys	p.N661K	ENST00000389048	NM_004304.4	661	aaC/aaA																																																																															
CDH1	999	MSKCC	GRCh37	16	68849655	68849655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008423-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			353	175	392	0	ENST00000261769.5:c.1561del	p.Ile521Ter	p.I521*	ENST00000261769	NM_004360.3	520	Aaa/aa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937580	32937611	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTCAGAAGATTATTCTTCATGGAGCAGAAC	TGGTCAGAAGATTATTCTTCATGGAGCAGAAC	-			P-0008423-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			406	199	503	0	ENST00000380152.3:c.8245_8276del	p.Gln2749GlyfsTer4	p.Q2749Gfs*4	ENST00000380152		2747	gtTGGTCAGAAGATTATTCTTCATGGAGCAGAACtg/gttg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0009791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	230	391	2	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0009791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	351	543	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199553	16199553	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	86	509	3	ENST00000375759.3:c.326G>T	p.Gly109Val	p.G109V	ENST00000375759	NM_015001.2	109	gGa/gTa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671979	30671979	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	230	724	0	ENST00000376406.3:c.4981G>C	p.Glu1661Gln	p.E1661Q	ENST00000376406	NM_014641.2	1661	Gag/Cag																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137528150	137528150	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0009791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	91	518	1	ENST00000367739.4:c.150C>G	p.Tyr50Ter	p.Y50*	ENST00000367739	NM_000416.2	50	taC/taG																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229522	98229522	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	38	668	4	ENST00000331920.6:c.2436C>A	p.Tyr812Ter	p.Y812*	ENST00000331920	NM_000264.3	812	taC/taA																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344720	118344720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	158	629	0	ENST00000534358.1:c.2846C>G	p.Thr949Ser	p.T949S	ENST00000534358	NM_005933.3	949	aCt/aGt																																																																															
IDH2	3418	MSKCC	GRCh37	15	90630670	90630670	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0009791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	104	695	0	ENST00000330062.3:c.815+1G>C		p.X272_splice	ENST00000330062	NM_002168.2	272																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9857771	9857771	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	233	742	0	ENST00000330684.3:c.3630C>A	p.Asn1210Lys	p.N1210K	ENST00000330684	NM_001134407.1	1210	aaC/aaA																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45371819	45371819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	56	374	0	ENST00000262160.6:c.1172C>A	p.Ala391Asp	p.A391D	ENST00000262160	NM_005901.5	391	gCt/gAt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	590	706	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498424	89498424	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1176464192		P-0011025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	214	453	1	ENST00000336596.2:c.2396G>A	p.Arg799His	p.R799H	ENST00000336596	NM_005233.5	799	cGc/cAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15273367	15273367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1320	228	497	0	ENST00000263388.2:c.5822C>T	p.Ser1941Leu	p.S1941L	ENST00000263388	NM_000435.2	1941	tCa/tTa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117678068	117678091	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATACAAGCGACTATAGAGGAAAA	AATACAAGCGACTATAGAGGAAAA	-			P-0011025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	87	318	0	ENST00000368508.3:c.3855-13_3865del		p.X1285_splice	ENST00000368508	NM_002944.2	1285																																																																																
SMARCD1	6602	MSKCC	GRCh37	12	50479165	50479166	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0011025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	159	235	0	ENST00000394963.4:c.14_15del	p.Ala5GlyfsTer125	p.A5Gfs*125	ENST00000394963	NM_003076.4	5	GCg/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0011027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	343	551	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0011027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	140	238	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662409	227662409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	54	262	0	ENST00000305123.5:c.1046C>T	p.Pro349Leu	p.P349L	ENST00000305123	NM_005544.2	349	cCc/cTc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152420067	152420067	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141662120		P-0011027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	77	431	2	ENST00000206249.3:c.1754C>T	p.Thr585Met	p.T585M	ENST00000206249	NM_000125.3	585	aCg/aTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207099	1207099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	222	450	0	ENST00000326873.7:c.187G>A	p.Val63Met	p.V63M	ENST00000326873	NM_000455.4	63	Gtg/Atg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117911	70117920	+	frameshift_variant	Frame_Shift_Del	DEL	TACCCGCACT	TACCCGCACT	-			P-0011027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	111	243	0	ENST00000245479.2:c.380_389del	p.Tyr127CysfsTer17	p.Y127Cfs*17	ENST00000245479	NM_000346.3	127	TACCCGCACTtg/tg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	481	480	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629325	187629325	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs550890340		P-0013118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1303	85	700	0	ENST00000441802.2:c.1657G>C	p.Val553Leu	p.V553L	ENST00000441802	NM_005245.3	553	Gtc/Ctc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584504	48584504	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	399	376	0	ENST00000342988.3:c.678del	p.Ser227ValfsTer14	p.S227Vfs*14	ENST00000342988	NM_005359.5	226	gCc/gc																																																																															
CDH1	999	MSKCC	GRCh37	16	68857497	68857501	+	frameshift_variant	Frame_Shift_Ins	INS	TGGGG	TGGGG	CGGGGA			P-0013118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	325	512	0	ENST00000261769.5:c.2132_2136delinsCGGGGA	p.Leu711ProfsTer37	p.L711Pfs*37	ENST00000261769	NM_004360.3	711	cTGGGG/cCGGGGA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0014525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1200	513	961	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880957	134880957	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	154	684	0	ENST00000398015.3:c.1520G>T	p.Arg507Leu	p.R507L	ENST00000398015	NM_004441.4	507	cGt/cTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121913444		P-0014525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	406	645	0	ENST00000275493.2:c.2582T>G	p.Leu861Arg	p.L861R	ENST00000275493	NM_005228.3	861	cTg/cGg																																																																															
RB1	5925	MSKCC	GRCh37	13	48937066	48937068	+	stop_gained	Nonsense_Mutation	ONP	TAA	TAA	AAG			P-0014525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	100	424	1	ENST00000267163.4:c.834_836delinsAAG	p.Cys278_Lys279delinsTer	p.C278_K279delins*	ENST00000267163	NM_000321.2	278	tgTAAa/tgAAGa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	242	404	0	ENST00000346208.3:c.878T>G	p.Met293Arg	p.M293R	ENST00000346208		293	aTg/aGg																																																																															
MED12	9968	MSKCC	GRCh37	X	70354255	70354255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	204	573	0	ENST00000374080.3:c.4666G>A	p.Glu1556Lys	p.E1556K	ENST00000374080		1556	Gag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060780	38060797	+	inframe_deletion	In_Frame_Del	DEL	GTTGATGGAGAACGGGTG	GTTGATGGAGAACGGGTG	-			P-0014926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	323	835	0	ENST00000250448.2:c.1192_1209del	p.His398_Asn403del	p.H398_N403del	ENST00000250448	NM_004496.3	398	CACCCGTTCTCCATCAAC/-																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061189	38061206	+	inframe_deletion	In_Frame_Del	DEL	TTGAAGCGCTTCTGGCGG	TTGAAGCGCTTCTGGCGG	-			P-0014926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	94	314	0	ENST00000250448.2:c.783_800del	p.Arg262_Lys267del	p.R262_K267del	ENST00000250448	NM_004496.3	261	cgCCGCCAGAAGCGCTTCAAg/cgg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226592	2226592	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376766280		P-0014926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	50	612	0	ENST00000398665.3:c.4072G>A	p.Gly1358Ser	p.G1358S	ENST00000398665	NM_032482.2	1358	Ggc/Agc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636989	176636989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	83	518	1	ENST00000439151.2:c.1589C>T	p.Pro530Leu	p.P530L	ENST00000439151	NM_022455.4	530	cCa/cTa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396278	139396278	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	210	603	1	ENST00000277541.6:c.5560C>A	p.Arg1854Ser	p.R1854S	ENST00000277541	NM_017617.3	1854	Cgc/Agc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591085	67591085	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519839		P-0018721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	250	262	1	ENST00000274335.5:c.1678G>T	p.Asp560Tyr	p.D560Y	ENST00000274335		560	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	387	438	0	ENST00000269305.4:c.517G>C	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ctg																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0018721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	110	267	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0018721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	259	197	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056342	27056343	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0018721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	112	194	0	ENST00000324856.7:c.1338_1339del	p.Gln449AlafsTer173	p.Q449Afs*173	ENST00000324856	NM_006015.4	446	tcTTat/tcat																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112017	115112017	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1156821376		P-0018721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1200	121	564	3	ENST00000257566.3:c.1723G>A	p.Ala575Thr	p.A575T	ENST00000257566	NM_016569.3	575	Gcg/Acg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30303882	30303882	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	217	474	1	ENST00000262643.3:c.118C>T	p.Gln40Ter	p.Q40*	ENST00000262643	NM_001238.2	40	Cag/Tag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213921	66213921	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0018721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	47	344	1	ENST00000273854.3:c.2509G>T	p.Gly837Ter	p.G837*	ENST00000273854	NM_004439.5	837	Gga/Tga																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139404331	139404331	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	138	544	0	ENST00000277541.6:c.2823C>G	p.Phe941Leu	p.F941L	ENST00000277541	NM_017617.3	941	ttC/ttG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	37	1251	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0018972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	13	761	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971166	21971167	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	56	1168	0	ENST00000304494.5:c.191dup	p.Leu65AlafsTer55	p.L65Afs*55	ENST00000304494	NM_000077.4	64	ctg/ctTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517201		P-0018972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	18	1170	1	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	93	804	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56167804	56167804	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	85	519	0	ENST00000399503.3:c.1369del	p.Thr457GlnfsTer30	p.T457Qfs*30	ENST00000399503	NM_005921.1	457	Aca/ca																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181757	56181758	+	splice_acceptor_variant	Splice_Site	INS	-	-	G			P-0019192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	63	392	0	ENST00000399503.3:c.3986dup		p.X1329_splice	ENST00000399503	NM_005921.1	1329																																																																																
GATA3	2625	MSKCC	GRCh37	10	8115967	8115995	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	TGGTCACCGCCATGGGTTAGAGCCCTGCT	TGGTCACCGCCATGGGTTAGAGCCCTGCT	-			P-0020544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	37	571	0	ENST00000346208.3:c.1313_*9del		p.*438*	ENST00000346208		438																																																																																
RECQL4	9401	MSKCC	GRCh37	8	145737624	145737624	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1287050785		P-0020544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	150	1261	1	ENST00000428558.2:c.3139G>A	p.Glu1047Lys	p.E1047K	ENST00000428558	NM_004260.3	1047	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0020646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	33	1023	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	35	797	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0021147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	458	721	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0021147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	95	402	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0021147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	127	448	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663299	227663301	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs753296153		P-0021147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	183	586	0	ENST00000305123.5:c.154_156del	p.Lys52del	p.K52del	ENST00000305123	NM_005544.2	52	AAG/-																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220064	36220064	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1232763910		P-0021147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	57	804	4	ENST00000222270.7:c.4784C>T	p.Ala1595Val	p.A1595V	ENST00000222270	NM_014727.1	1595	gCg/gTg																																																																															
KIT	3815	MSKCC	GRCh37	4	55598132	55598132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	88	547	1	ENST00000288135.5:c.2329G>A	p.Ala777Thr	p.A777T	ENST00000288135	NM_000222.2	777	Gca/Aca																																																																															
KLF4	9314	MSKCC	GRCh37	9	110251222	110251222	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756574707		P-0021147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	44	873	0	ENST00000374672.4:c.115G>A	p.Ala39Thr	p.A39T	ENST00000374672	NM_004235.4	39	Gcc/Acc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0021149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	125	269	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0021149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	813	638	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637689	52637689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	249	629	1	ENST00000394830.3:c.2627G>A	p.Arg876His	p.R876H	ENST00000394830	NM_018313.4	876	cGt/cAt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273849	18273851	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0021149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	649	678	0	ENST00000222254.8:c.1184_1186del	p.Phe395del	p.F395del	ENST00000222254	NM_005027.3	394	acCTTc/acc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021299	31021299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	237	547	0	ENST00000375687.4:c.1298C>T	p.Ala433Val	p.A433V	ENST00000375687	NM_015338.5	433	gCa/gTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8375973	8375973	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	153	383	0	ENST00000356435.5:c.4624A>C	p.Asn1542His	p.N1542H	ENST00000356435		1542	Aac/Cac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	213	579	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs764146326		P-0021320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	24	1055	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961321	54961321	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs2230743		P-0021320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	218	836	0	ENST00000312783.6:c.311C>T	p.Ser104Leu	p.S104L	ENST00000312783	NM_198436.1	104	tCg/tTg																																																																															
RB1	5925	MSKCC	GRCh37	13	48939109	48939109	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0021320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	263	600	2	ENST00000267163.4:c.939+2T>A		p.X313_splice	ENST00000267163	NM_000321.2	313																																																																																
NFKBIA	4792	MSKCC	GRCh37	14	35871674	35871674	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	40	787	2	ENST00000216797.5:c.832C>T	p.Gln278Ter	p.Q278*	ENST00000216797	NM_020529.2	278	Cag/Tag																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457614	67457614	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1253901433		P-0021320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	319	979	2	ENST00000327367.4:c.424C>T	p.Arg142Cys	p.R142C	ENST00000327367	NM_005902.3	142	Cgc/Tgc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15935696	15935696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	30	622	0	ENST00000268712.3:c.7237C>T	p.Pro2413Ser	p.P2413S	ENST00000268712	NM_006311.3	2413	Cct/Tct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212428	36212428	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	411	1133	0	ENST00000222270.7:c.2179C>G	p.Leu727Val	p.L727V	ENST00000222270	NM_014727.1	727	Ctg/Gtg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665213	138665213	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	483	1142	1	ENST00000330315.3:c.352G>C	p.Glu118Gln	p.E118Q	ENST00000330315	NM_023067.3	118	Gag/Cag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55270261	55270261	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	304	980	0	ENST00000275493.2:c.3214G>C	p.Asp1072His	p.D1072H	ENST00000275493	NM_005228.3	1072	Gac/Cac																																																																															
BRAF	673	MSKCC	GRCh37	7	140439637	140439637	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	314	703	0	ENST00000288602.6:c.2102G>C	p.Arg701Thr	p.R701T	ENST00000288602	NM_004333.4	701	aGa/aCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	121	812	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0021660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	12	690	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032510	12032510	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	98	484	0	ENST00000353533.5:c.946C>T	p.Gln316Ter	p.Q316*	ENST00000353533	NM_003010.3	316	Caa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434810	49434810	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1228231026		P-0021660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	194	1155	0	ENST00000301067.7:c.6743G>A	p.Arg2248His	p.R2248H	ENST00000301067	NM_003482.3	2248	cGc/cAc																																																																															
CBFB	865	MSKCC	GRCh37	16	67063669	67063669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	117	599	1	ENST00000412916.2:c.118C>A	p.Arg40Ser	p.R40S	ENST00000412916		40	Cgc/Agc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15984008	15984008	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	99	490	1	ENST00000268712.3:c.3211C>T	p.Gln1071Ter	p.Q1071*	ENST00000268712	NM_006311.3	1071	Cag/Tag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021757	71021757	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	103	712	0	ENST00000318789.4:c.1601G>A	p.Trp534Ter	p.W534*	ENST00000318789	NM_032682.5	534	tGg/tAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900138	151900138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	77	570	0	ENST00000262189.6:c.3973C>T	p.Gln1325Ter	p.Q1325*	ENST00000262189	NM_170606.2	1325	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	445	1119	1	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433714	49433715	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGAGGGCGTAGTGG			P-0021782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1132	385	1207	0	ENST00000301067.7:c.7825_7838dup	p.Ser2614HisfsTer82	p.S2614Hfs*82	ENST00000301067	NM_003482.3	2613	ccg/ccCCACTACGCCCTCCg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981793	70981793	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1603	1858	1116	0	ENST00000276594.2:c.303G>T	p.Trp101Cys	p.W101C	ENST00000276594	NM_024504.3	101	tgG/tgT																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880984	37880985	+	inframe_insertion	In_Frame_Ins	INS	-	-	TACGTGATGGCT			P-0022097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	443	756	0	ENST00000269571.5:c.2314_2325dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/TACGTGATGGCT																																																																															
KDM5A	5927	MSKCC	GRCh37	12	461396	461396	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	79	503	0	ENST00000399788.2:c.1124C>G	p.Ser375Cys	p.S375C	ENST00000399788	NM_001042603.1	375	tCt/tGt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30103718	30103718	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	1090	573	2	ENST00000331968.5:c.1220T>C	p.Met407Thr	p.M407T	ENST00000331968	NM_002742.2	407	aTg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577045	7577045	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	328	742	0	ENST00000269305.4:c.893del	p.Glu298GlyfsTer47	p.E298Gfs*47	ENST00000269305	NM_001126112.2	298	gAg/gg																																																																															
EP300	2033	MSKCC	GRCh37	22	41546098	41546098	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763211430		P-0022097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	51	602	0	ENST00000263253.7:c.2713C>A	p.Pro905Thr	p.P905T	ENST00000263253	NM_001429.3	905	Cct/Act																																																																															
APC	324	MSKCC	GRCh37	5	112173885	112173885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	338	371	0	ENST00000257430.4:c.2594C>T	p.Pro865Leu	p.P865L	ENST00000257430	NM_000038.5	865	cCa/cTa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11291067	11291067	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	70	666	0	ENST00000361445.4:c.2694G>T	p.Lys898Asn	p.K898N	ENST00000361445	NM_004958.3	898	aaG/aaT																																																																															
MTOR	2475	MSKCC	GRCh37	1	11317000	11317000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	49	411	0	ENST00000361445.4:c.494G>T	p.Arg165Ile	p.R165I	ENST00000361445	NM_004958.3	165	aGa/aTa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256692	16256692	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	32	614	0	ENST00000375759.3:c.3957G>T	p.Gln1319His	p.Q1319H	ENST00000375759	NM_015001.2	1319	caG/caT																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257959	16257959	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	120	616	0	ENST00000375759.3:c.5224T>C	p.Phe1742Leu	p.F1742L	ENST00000375759	NM_015001.2	1742	Ttt/Ctt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260803	16260803	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150899650		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	125	593	1	ENST00000375759.3:c.8068G>A	p.Val2690Met	p.V2690M	ENST00000375759	NM_015001.2	2690	Gtg/Atg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088709	27088709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373690941		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	180	775	2	ENST00000324856.7:c.2318C>T	p.Pro773Leu	p.P773L	ENST00000324856	NM_006015.4	773	cCg/cTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101301	27101301	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746264786		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	138	727	0	ENST00000324856.7:c.4583G>A	p.Arg1528Gln	p.R1528Q	ENST00000324856	NM_006015.4	1528	cGa/cAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs879255270		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	147	609	1	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39317318	39317318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	120	638	1	ENST00000373001.3:c.868G>A	p.Asp290Asn	p.D290N	ENST00000373001	NM_022157.3	290	Gat/Aat																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39322577	39322577	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	116	657	0	ENST00000373001.3:c.415G>T	p.Ala139Ser	p.A139S	ENST00000373001	NM_022157.3	139	Gca/Tca																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46714211	46714211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	145	596	0	ENST00000371975.4:c.31G>A	p.Ala11Thr	p.A11T	ENST00000371975	NM_003579.3	11	Gcc/Acc																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439681	51439681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	64	501	0	ENST00000262662.1:c.246C>A	p.Phe82Leu	p.F82L	ENST00000262662		82	ttC/ttA																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78444592	78444592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	140	466	2	ENST00000370768.2:c.97G>T	p.Asp33Tyr	p.D33Y	ENST00000370768	NM_003902.3	33	Gat/Tat																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120497768	120497768	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781902176		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	59	595	4	ENST00000256646.2:c.2114G>A	p.Arg705His	p.R705H	ENST00000256646	NM_024408.3	705	cGc/cAc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874163	155874163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs977405637		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	207	735	1	ENST00000368323.3:c.368G>A	p.Arg123His	p.R123H	ENST00000368323	NM_006912.5	123	cGt/cAt																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874172	155874172	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753425443		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	190	742	2	ENST00000368323.3:c.359G>A	p.Arg120Gln	p.R120Q	ENST00000368323	NM_006912.5	120	cGa/cAa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729614	162729614	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773580613		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	103	598	0	ENST00000367921.3:c.700G>A	p.Asp234Asn	p.D234N	ENST00000367921	NM_006182.2	234	Gat/Aat																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111074	193111074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	86	412	0	ENST00000367435.3:c.607G>T	p.Asp203Tyr	p.D203Y	ENST00000367435	NM_024529.4	203	Gat/Tat																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111167	193111167	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	114	493	0	ENST00000367435.3:c.700C>T	p.Arg234Ter	p.R234*	ENST00000367435	NM_024529.4	234	Cga/Tga																																																																															
MDM4	4194	MSKCC	GRCh37	1	204512023	204512023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	110	518	0	ENST00000367182.3:c.623G>A	p.Ser208Asn	p.S208N	ENST00000367182	NM_001278516.1	208	aGc/aAc																																																																															
PARP1	142	MSKCC	GRCh37	1	226568877	226568877	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	113	601	0	ENST00000366794.5:c.1192C>A	p.Leu398Ile	p.L398I	ENST00000366794	NM_001618.3	398	Ctc/Atc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716095	243716095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	156	739	1	ENST00000263826.5:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000263826	NM_005465.4	367	Cga/Tga																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63662041	63662041	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs371476471		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	190	522	0	ENST00000279873.7:c.145A>G	p.Lys49Glu	p.K49E	ENST00000279873	NM_032199.2	49	Aag/Gag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63760071	63760071	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751880754		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	126	374	1	ENST00000279873.7:c.724G>A	p.Asp242Asn	p.D242N	ENST00000279873	NM_032199.2	242	Gat/Aat																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63817029	63817029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	116	338	0	ENST00000279873.7:c.1000G>A	p.Glu334Lys	p.E334K	ENST00000279873	NM_032199.2	334	Gaa/Aaa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63817076	63817076	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	23	236	0	ENST00000279873.7:c.1047G>T	p.Gln349His	p.Q349H	ENST00000279873	NM_032199.2	349	caG/caT																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850636	63850636	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	72	372	1	ENST00000279873.7:c.1414G>T	p.Glu472Ter	p.E472*	ENST00000279873	NM_032199.2	472	Gaa/Taa																																																																															
TET1	80312	MSKCC	GRCh37	10	70450596	70450596	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	154	574	0	ENST00000373644.4:c.5440del	p.Ser1814ValfsTer9	p.S1814Vfs*9	ENST00000373644	NM_030625.2	1812	gtA/gt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720741	89720741	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs371387815		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	13	185	1	ENST00000371953.3:c.892C>T	p.Gln298Ter	p.Q298*	ENST00000371953	NM_000314.4	298	Caa/Taa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123258033	123258033	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	111	744	0	ENST00000358487.5:c.1648C>A	p.Leu550Ile	p.L550I	ENST00000358487	NM_000141.4	550	Ctt/Att																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279681	123279681	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	53	392	1	ENST00000358487.5:c.751C>T	p.Arg251Ter	p.R251*	ENST00000358487	NM_000141.4	251	Cga/Tga																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154880	2154880	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761163170		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	158	664	0	ENST00000434045.2:c.341G>A	p.Arg114His	p.R114H	ENST00000434045	NM_001127598.1	114	cGt/cAt																																																																															
WT1	7490	MSKCC	GRCh37	11	32456678	32456678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	97	444	1	ENST00000332351.3:c.214G>A	p.Asp72Asn	p.D72N	ENST00000332351	NM_024426.4	72	Gac/Aac																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64132779	64132779	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776640922		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	97	616	3	ENST00000334205.4:c.913G>A	p.Asp305Asn	p.D305N	ENST00000334205	NM_003942.2	305	Gat/Aat																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577332	64577332	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1470227348		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	57	712	0	ENST00000337652.1:c.250T>C	p.Ser84Pro	p.S84P	ENST00000337652	NM_130803.2	84	Tct/Cct																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514320	69514320	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	52	561	0	ENST00000294312.3:c.361G>C	p.Ala121Pro	p.A121P	ENST00000294312	NM_005117.2	121	Gct/Cct																																																																															
PAK1	5058	MSKCC	GRCh37	11	77047231	77047231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	169	629	1	ENST00000356341.3:c.1313G>A	p.Arg438Gln	p.R438Q	ENST00000356341	NM_002576.4	438	cGa/cAa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94169032	94169032	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1264567817		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	127	595	0	ENST00000323929.3:c.1960G>T	p.Asp654Tyr	p.D654Y	ENST00000323929	NM_005591.3	654	Gac/Tac																																																																															
SESN3	143686	MSKCC	GRCh37	11	94923009	94923009	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	193	780	0	ENST00000536441.1:c.459A>C	p.Lys153Asn	p.K153N	ENST00000536441	NM_144665.3	153	aaA/aaC																																																																															
PGR	5241	MSKCC	GRCh37	11	100962516	100962516	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	135	613	0	ENST00000325455.5:c.1881C>A	p.Cys627Ter	p.C627*	ENST00000325455	NM_001202474.3	627	tgC/tgA																																																																															
PGR	5241	MSKCC	GRCh37	11	100996761	100996761	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	49	591	0	ENST00000325455.5:c.1766T>C	p.Val589Ala	p.V589A	ENST00000325455	NM_001202474.3	589	gTc/gCc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998793	100998793	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	53	632	0	ENST00000325455.5:c.1009A>C	p.Ser337Arg	p.S337R	ENST00000325455	NM_001202474.3	337	Agc/Cgc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195344	102195344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1220112786		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	178	564	1	ENST00000263464.3:c.104C>T	p.Thr35Met	p.T35M	ENST00000263464	NM_001165.4	35	aCg/aTg																																																																															
ATM	472	MSKCC	GRCh37	11	108170554	108170554	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	130	567	2	ENST00000278616.4:c.5119G>T	p.Glu1707Ter	p.E1707*	ENST00000278616	NM_000051.3	1707	Gaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108199820	108199820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	106	420	0	ENST00000278616.4:c.7162C>T	p.Leu2388Phe	p.L2388F	ENST00000278616	NM_000051.3	2388	Ctc/Ttc																																																																															
ATM	472	MSKCC	GRCh37	11	108199875	108199875	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs771994581		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	49	368	0	ENST00000278616.4:c.7217A>G	p.Lys2406Arg	p.K2406R	ENST00000278616	NM_000051.3	2406	aAa/aGa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416777	416777	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs373294922		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	81	388	0	ENST00000399788.2:c.3773A>G	p.Asp1258Gly	p.D1258G	ENST00000399788	NM_001042603.1	1258	gAt/gGt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427295	427295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	131	629	0	ENST00000399788.2:c.2874G>T	p.Lys958Asn	p.K958N	ENST00000399788	NM_001042603.1	958	aaG/aaT																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435382	18435382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	39	461	0	ENST00000266497.5:c.367G>A	p.Glu123Lys	p.E123K	ENST00000266497		123	Gaa/Aaa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21623997	21623997	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759728105		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	73	322	0	ENST00000421138.2:c.1703C>T	p.Ser568Leu	p.S568L	ENST00000421138		568	tCg/tTg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21624504	21624504	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	214	785	0	ENST00000421138.2:c.1525A>C	p.Lys509Gln	p.K509Q	ENST00000421138		509	Aaa/Caa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21627911	21627911	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A	rs770499904		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	145	700	2	ENST00000421138.2:c.1219C>T	p.Arg407Ter	p.R407*	ENST00000421138		407	Cga/Tga																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233157	46233157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	33	437	0	ENST00000334344.6:c.1376C>T	p.Pro459Leu	p.P459L	ENST00000334344	NM_152641.2	459	cCt/cTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416612	49416612	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	160	656	0	ENST00000301067.7:c.16099A>G	p.Thr5367Ala	p.T5367A	ENST00000301067	NM_003482.3	5367	Acc/Gcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420778	49420778	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1427665021		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	51	647	0	ENST00000301067.7:c.14971C>T	p.Arg4991Trp	p.R4991W	ENST00000301067	NM_003482.3	4991	Cgg/Tgg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495747	56495747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	134	570	0	ENST00000267101.3:c.3937C>A	p.Leu1313Ile	p.L1313I	ENST00000267101	NM_001982.3	1313	Cta/Ata																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864187	57864187	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	65	617	0	ENST00000228682.2:c.1664T>C	p.Val555Ala	p.V555A	ENST00000228682	NM_005269.2	555	gTc/gCc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864193	57864193	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746398371		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	128	614	2	ENST00000228682.2:c.1670G>A	p.Arg557His	p.R557H	ENST00000228682	NM_005269.2	557	cGc/cAc																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233378	69233378	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	96	484	0	ENST00000462284.1:c.1243G>T	p.Glu415Ter	p.E415*	ENST00000462284	NM_002392.5	415	Gaa/Taa																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112892416	112892416	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1488672907		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	73	657	1	ENST00000351677.2:c.574G>T	p.Asp192Tyr	p.D192Y	ENST00000351677	NM_002834.3	192	Gat/Tat																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112508	115112508	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755311630		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	32	634	0	ENST00000257566.3:c.1232C>T	p.Ala411Val	p.A411V	ENST00000257566	NM_016569.3	411	gCg/gTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117311	115117311	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	128	512	0	ENST00000257566.3:c.863A>C	p.Lys288Thr	p.K288T	ENST00000257566	NM_016569.3	288	aAg/aCg																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800928	120800928	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1337094477		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	148	601	2	ENST00000257552.2:c.320G>A	p.Arg107Gln	p.R107Q	ENST00000257552	NM_002442.3	107	cGa/cAa																																																																															
POLE	5426	MSKCC	GRCh37	12	133208920	133208920	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	48	607	0	ENST00000320574.5:c.6311T>G	p.Phe2104Cys	p.F2104C	ENST00000320574	NM_006231.2	2104	tTc/tGc																																																																															
POLE	5426	MSKCC	GRCh37	12	133210831	133210831	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	68	914	0	ENST00000320574.5:c.5945T>G	p.Ile1982Ser	p.I1982S	ENST00000320574	NM_006231.2	1982	aTt/aGt																																																																															
POLE	5426	MSKCC	GRCh37	12	133214650	133214650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	138	579	0	ENST00000320574.5:c.5628G>T	p.Lys1876Asn	p.K1876N	ENST00000320574	NM_006231.2	1876	aaG/aaT																																																																															
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519945		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	86	532	1	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28623524	28623524	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371030554		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	89	499	0	ENST00000241453.7:c.1033G>A	p.Val345Ile	p.V345I	ENST00000241453	NM_004119.2	345	Gta/Ata																																																																															
BRCA2	675	MSKCC	GRCh37	13	32899248	32899248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375125172		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	74	478	1	ENST00000380152.3:c.352C>T	p.Arg118Cys	p.R118C	ENST00000380152		118	Cgc/Tgc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900639	32900639	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41293469		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	117	484	1	ENST00000380152.3:c.520C>T	p.Arg174Cys	p.R174C	ENST00000380152		174	Cgt/Tgt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911500	32911500	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	153	571	0	ENST00000380152.3:c.3008A>G	p.His1003Arg	p.H1003R	ENST00000380152		1003	cAc/cGc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912546	32912546	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs80358655		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	215	671	0	ENST00000380152.3:c.4054G>T	p.Asp1352Tyr	p.D1352Y	ENST00000380152		1352	Gat/Tat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914232	32914232	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	78	642	0	ENST00000380152.3:c.5740A>G	p.Ser1914Gly	p.S1914G	ENST00000380152		1914	Agc/Ggc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32920978	32920978	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs80358920		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	76	575	2	ENST00000380152.3:c.6952C>T	p.Arg2318Ter	p.R2318*	ENST00000380152		2318	Cga/Tga																																																																															
DIS3	22894	MSKCC	GRCh37	13	73335535	73335535	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	219	624	0	ENST00000377767.4:c.2636A>G	p.Asp879Gly	p.D879G	ENST00000377767	NM_014953.3	879	gAc/gGc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515335	103515335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	103	428	0	ENST00000355739.4:c.1836G>T	p.Glu612Asp	p.E612D	ENST00000355739	NM_000123.3	612	gaG/gaT																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066828	30066828	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	119	683	1	ENST00000331968.5:c.2303C>A	p.Ser768Tyr	p.S768Y	ENST00000331968	NM_002742.2	768	tCt/tAt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135304	30135304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	125	642	0	ENST00000331968.5:c.514C>T	p.Arg172Cys	p.R172C	ENST00000331968	NM_002742.2	172	Cgt/Tgt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135325	30135325	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	143	659	0	ENST00000331968.5:c.493G>T	p.Glu165Ter	p.E165*	ENST00000331968	NM_002742.2	165	Gaa/Taa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582984	95582984	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	106	462	0	ENST00000343455.3:c.1558A>C	p.Ser520Arg	p.S520R	ENST00000343455	NM_177438.2	520	Agt/Cgt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95590756	95590756	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746886465		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	119	532	0	ENST00000343455.3:c.1153C>T	p.Arg385Cys	p.R385C	ENST00000343455	NM_177438.2	385	Cgc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42005631	42005631	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	45	482	0	ENST00000219905.7:c.3367G>T	p.Glu1123Ter	p.E1123*	ENST00000219905	NM_001164273.1	1123	Gaa/Taa																																																																															
MGA	23269	MSKCC	GRCh37	15	42042302	42042302	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	65	664	0	ENST00000219905.7:c.6497C>A	p.Ser2166Tyr	p.S2166Y	ENST00000219905	NM_001164273.1	2166	tCt/tAt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43707804	43707804	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	85	782	0	ENST00000382044.4:c.5077A>C	p.Thr1693Pro	p.T1693P	ENST00000382044	NM_001141980.1	1693	Aca/Cca																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43714141	43714141	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	183	801	0	ENST00000382044.4:c.4012G>T	p.Gly1338Ter	p.G1338*	ENST00000382044	NM_001141980.1	1338	Gga/Tga																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43784525	43784525	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1048972918		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	174	722	1	ENST00000382044.4:c.149G>A	p.Arg50Gln	p.R50Q	ENST00000382044	NM_001141980.1	50	cGa/cAa																																																																															
B2M	567	MSKCC	GRCh37	15	45007642	45007642	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	115	388	0	ENST00000558401.1:c.89A>G	p.Tyr30Cys	p.Y30C	ENST00000558401	NM_004048.2	30	tAc/tGc																																																																															
B2M	567	MSKCC	GRCh37	15	45007791	45007791	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	112	595	0	ENST00000558401.1:c.238T>C	p.Trp80Arg	p.W80R	ENST00000558401	NM_004048.2	80	Tgg/Cgg																																																																															
B2M	567	MSKCC	GRCh37	15	45007876	45007876	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	156	544	0	ENST00000558401.1:c.323C>A	p.Ser108Ter	p.S108*	ENST00000558401	NM_004048.2	108	tCa/tAa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88669589	88669589	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	109	448	0	ENST00000360948.2:c.1309G>T	p.Gly437Ter	p.G437*	ENST00000360948	NM_001012338.2	437	Gga/Tga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679272	88679272	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	43	648	0	ENST00000360948.2:c.766-1G>A		p.X256_splice	ENST00000360948	NM_001012338.2	256																																																																																
NTRK3	4916	MSKCC	GRCh37	15	88799180	88799180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	123	740	0	ENST00000360948.2:c.205G>A	p.Ala69Thr	p.A69T	ENST00000360948	NM_001012338.2	69	Gcc/Acc																																																																															
BLM	641	MSKCC	GRCh37	15	91290717	91290717	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	98	424	0	ENST00000355112.3:c.95T>G	p.Phe32Cys	p.F32C	ENST00000355112	NM_000057.2	32	tTt/tGt																																																																															
BLM	641	MSKCC	GRCh37	15	91303958	91303958	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	87	704	1	ENST00000355112.3:c.1355A>G	p.Glu452Gly	p.E452G	ENST00000355112	NM_000057.2	452	gAg/gGg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396626	396626	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143341222		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	145	634	0	ENST00000262320.3:c.400G>A	p.Glu134Lys	p.E134K	ENST00000262320	NM_003502.3	134	Gag/Aag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2126107	2126107	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs796053491		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	178	775	0	ENST00000219476.3:c.2678T>C	p.Ile893Thr	p.I893T	ENST00000219476	NM_000548.3	893	aTa/aCa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136735	2136735	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs377129517		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	143	825	0	ENST00000219476.3:c.4852G>A	p.Val1618Ile	p.V1618I	ENST00000219476	NM_000548.3	1618	Gtc/Atc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3644516	3644516	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1367749586		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	163	796	1	ENST00000294008.3:c.2098G>A	p.Gly700Arg	p.G700R	ENST00000294008	NM_032444.2	700	Ggg/Agg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857706	9857706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	84	485	0	ENST00000330684.3:c.3695C>T	p.Ser1232Phe	p.S1232F	ENST00000330684	NM_001134407.1	1232	tCc/tTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916198	9916198	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	51	631	1	ENST00000330684.3:c.2091C>A	p.Asn697Lys	p.N697K	ENST00000330684	NM_001134407.1	697	aaC/aaA																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916260	9916260	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	35	504	0	ENST00000330684.3:c.2029T>G	p.Ser677Ala	p.S677A	ENST00000330684	NM_001134407.1	677	Tcc/Gcc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14022054	14022054	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	148	587	0	ENST00000311895.7:c.754T>G	p.Leu252Val	p.L252V	ENST00000311895	NM_005236.2	252	Tta/Gta																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029183	14029183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	95	373	0	ENST00000311895.7:c.1394C>T	p.Ser465Phe	p.S465F	ENST00000311895	NM_005236.2	465	tCt/tTt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645297	67645297	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	119	559	2	ENST00000264010.4:c.562G>T	p.Asp188Tyr	p.D188Y	ENST00000264010	NM_006565.3	188	Gat/Tat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993212	72993212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	223	834	0	ENST00000268489.5:c.833G>T	p.Arg278Met	p.R278M	ENST00000268489	NM_006885.3	278	aGg/aTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81939108	81939108	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	81	475	0	ENST00000359376.3:c.1463A>C	p.Asp488Ala	p.D488A	ENST00000359376	NM_002661.3	488	gAc/gCc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81990399	81990399	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199530350		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	186	715	0	ENST00000359376.3:c.3670C>T	p.Arg1224Cys	p.R1224C	ENST00000359376	NM_002661.3	1224	Cgc/Tgc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349604	89349604	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs924589358		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	199	907	1	ENST00000301030.4:c.3346G>A	p.Ala1116Thr	p.A1116T	ENST00000301030	NM_001256183.1	1116	Gca/Aca																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350407	89350407	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	200	881	0	ENST00000301030.4:c.2543C>A	p.Ser848Ter	p.S848*	ENST00000301030	NM_001256183.1	848	tCa/tAa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350882	89350882	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751750670		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	257	1072	1	ENST00000301030.4:c.2068G>A	p.Asp690Asn	p.D690N	ENST00000301030	NM_001256183.1	690	Gat/Aat																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216782	7216782	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1324992597		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	99	549	1	ENST00000380728.2:c.641C>T	p.Ser214Leu	p.S214L	ENST00000380728		214	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	132	744	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16056687	16056687	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs767188997		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	156	605	2	ENST00000268712.3:c.755A>C	p.Lys252Thr	p.K252T	ENST00000268712	NM_006311.3	252	aAa/aCa																																																																															
NF1	4763	MSKCC	GRCh37	17	29528158	29528158	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs149739570		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	152	799	0	ENST00000358273.4:c.1166A>G	p.His389Arg	p.H389R	ENST00000358273	NM_001042492.2	389	cAc/cGc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627509	37627509	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs371684674		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	145	609	2	ENST00000447079.4:c.1424C>A	p.Ser475Tyr	p.S475Y	ENST00000447079	NM_015083.1	475	tCt/tAt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37680983	37680983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	144	571	0	ENST00000447079.4:c.3152G>A	p.Arg1051Gln	p.R1051Q	ENST00000447079	NM_015083.1	1051	cGa/cAa																																																																															
RARA	5914	MSKCC	GRCh37	17	38504619	38504619	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1240210247		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	102	773	1	ENST00000254066.5:c.230C>T	p.Ser77Leu	p.S77L	ENST00000254066	NM_000964.3	77	tCg/tTg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40857132	40857132	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1316478374		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	145	632	0	ENST00000428826.2:c.1909G>A	p.Glu637Lys	p.E637K	ENST00000428826		637	Gaa/Aaa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244866	41244866	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	156	693	0	ENST00000357654.3:c.2682A>C	p.Lys894Asn	p.K894N	ENST00000357654	NM_007294.3	894	aaA/aaC																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246409	41246409	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs876659193		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	144	810	0	ENST00000357654.3:c.1139A>C	p.Gln380Pro	p.Q380P	ENST00000357654	NM_007294.3	380	cAg/cCg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47699412	47699412	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	85	446	0	ENST00000347630.2:c.96C>A	p.Phe32Leu	p.F32L	ENST00000347630	NM_001007230.1	32	ttC/ttA																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58677945	58677945	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770413280		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	43	320	1	ENST00000305921.3:c.170C>T	p.Ala57Val	p.A57V	ENST00000305921	NM_003620.3	57	gCc/gTc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761219	59761219	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs575998972		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	189	846	0	ENST00000259008.2:c.3188C>T	p.Ser1063Leu	p.S1063L	ENST00000259008	NM_032043.2	1063	tCg/tTg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761357	59761357	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747907706		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	134	703	1	ENST00000259008.2:c.3050C>T	p.Pro1017Leu	p.P1017L	ENST00000259008	NM_032043.2	1017	cCg/cTg																																																																															
CD79B	974	MSKCC	GRCh37	17	62007506	62007506	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	135	732	0	ENST00000392795.3:c.361T>C	p.Tyr121His	p.Y121H	ENST00000392795	NM_001039933.1	121	Tac/Cac																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372094	45372094	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	136	743	0	ENST00000262160.6:c.1075A>G	p.Ser359Gly	p.S359G	ENST00000262160	NM_005901.5	359	Agc/Ggc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45377685	45377685	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	76	427	0	ENST00000262160.6:c.744A>C	p.Glu248Asp	p.E248D	ENST00000262160	NM_005901.5	248	gaA/gaC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604736	48604736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	131	559	0	ENST00000342988.3:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000342988	NM_005359.5	520	Gaa/Taa																																																																															
STK11	6794	MSKCC	GRCh37	19	1226642	1226642	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	68	473	0	ENST00000326873.7:c.1298A>G	p.Gln433Arg	p.Q433R	ENST00000326873	NM_000455.4	433	cAg/cGg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211143	2211143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	60	807	1	ENST00000398665.3:c.1397G>A	p.Ser466Asn	p.S466N	ENST00000398665	NM_032482.2	466	aGc/aAc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4117529	4117529	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1135401787		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	58	248	0	ENST00000262948.5:c.191T>C	p.Val64Ala	p.V64A	ENST00000262948	NM_030662.3	64	gTc/gCc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214663	5214663	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	32	792	0	ENST00000357368.4:c.4403T>C	p.Leu1468Pro	p.L1468P	ENST00000357368	NM_002850.3	1468	cTg/cCg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220080	5220080	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375875548		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	100	669	2	ENST00000357368.4:c.3635G>A	p.Arg1212His	p.R1212H	ENST00000357368	NM_002850.3	1212	cGc/cAc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10267124	10267124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751093624		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	155	696	1	ENST00000340748.4:c.1294G>A	p.Glu432Lys	p.E432K	ENST00000340748		432	Gaa/Aaa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11106922	11106922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	174	746	0	ENST00000344626.4:c.1627G>A	p.Asp543Asn	p.D543N	ENST00000344626	NM_003072.3	543	Gac/Aac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144518	11144518	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765989895		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	154	577	1	ENST00000344626.4:c.3850G>A	p.Asp1284Asn	p.D1284N	ENST00000344626	NM_003072.3	1284	Gac/Aac																																																																															
JAK3	3718	MSKCC	GRCh37	19	17954299	17954299	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	86	576	0	ENST00000458235.1:c.310T>G	p.Phe104Val	p.F104V	ENST00000458235	NM_000215.3	104	Ttt/Gtt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273041	18273041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	166	773	1	ENST00000222254.8:c.931C>T	p.Pro311Ser	p.P311S	ENST00000222254	NM_005027.3	311	Ccg/Tcg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313208	30313208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	132	779	1	ENST00000262643.3:c.902C>A	p.Ala301Asp	p.A301D	ENST00000262643	NM_001238.2	301	gCt/gAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218664	36218664	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	133	774	0	ENST00000222270.7:c.4368C>A	p.Phe1456Leu	p.F1456L	ENST00000222270	NM_014727.1	1456	ttC/ttA																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229346	36229346	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1452431678		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	159	591	3	ENST00000222270.7:c.8036G>A	p.Arg2679His	p.R2679H	ENST00000222270	NM_014727.1	2679	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229444	36229444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	66	530	0	ENST00000222270.7:c.8134C>T	p.Arg2712Trp	p.R2712W	ENST00000222270	NM_014727.1	2712	Cgg/Tgg																																																																															
AXL	558	MSKCC	GRCh37	19	41763489	41763489	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201238916		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	116	594	0	ENST00000301178.4:c.2288G>A	p.Arg763His	p.R763H	ENST00000301178	NM_021913.4	763	cGc/cAc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383653	42383653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	108	662	0	ENST00000221972.3:c.428G>A	p.Arg143Gln	p.R143Q	ENST00000221972	NM_021601.3	143	cGa/cAa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753836	42753836	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1250639908		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	87	904	2	ENST00000222329.4:c.428G>A	p.Arg143His	p.R143H	ENST00000222329	NM_006494.2	143	cGc/cAc																																																																															
CIC	23152	MSKCC	GRCh37	19	42793222	42793222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	145	735	0	ENST00000575354.2:c.1114G>A	p.Ala372Thr	p.A372T	ENST00000575354	NM_015125.3	372	Gcg/Acg																																																																															
CIC	23152	MSKCC	GRCh37	19	42797894	42797894	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1314616216		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	49	718	3	ENST00000575354.2:c.3946G>T	p.Gly1316Trp	p.G1316W	ENST00000575354	NM_015125.3	1316	Ggg/Tgg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45860760	45860760	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146632315		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	57	745	2	ENST00000391945.4:c.1349G>A	p.Arg450His	p.R450H	ENST00000391945	NM_000400.3	450	cGt/cAt																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868194	45868194	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1032384332		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	62	752	1	ENST00000391945.4:c.496C>T	p.Arg166Cys	p.R166C	ENST00000391945	NM_000400.3	166	Cgt/Tgt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716301	52716301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	104	645	1	ENST00000322088.6:c.745C>T	p.Arg249Cys	p.R249C	ENST00000322088	NM_014225.5	249	Cgc/Tgc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085680	16085680	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776847158		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	79	742	0	ENST00000281043.3:c.856C>T	p.Arg286Cys	p.R286C	ENST00000281043	NM_005378.4	286	Cgt/Tgt																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086001	16086001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	170	604	0	ENST00000281043.3:c.1177C>T	p.Arg393Cys	p.R393C	ENST00000281043	NM_005378.4	393	Cgc/Tgc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25498386	25498386	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1274769751		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	118	575	0	ENST00000264709.3:c.475G>A	p.Glu159Lys	p.E159K	ENST00000264709	NM_175629.2	159	Gaa/Aaa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523076	25523076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	137	680	0	ENST00000264709.3:c.109G>A	p.Glu37Lys	p.E37K	ENST00000264709	NM_175629.2	37	Gag/Aag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966873	25966873	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1271466699		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	115	645	2	ENST00000435504.4:c.2333del	p.Pro778GlnfsTer21	p.P778Qfs*21	ENST00000435504		778	cCa/ca																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967231	25967231	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	114	539	0	ENST00000435504.4:c.1975G>T	p.Asp659Tyr	p.D659Y	ENST00000435504		659	Gac/Tac																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982356	25982356	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	89	311	0	ENST00000435504.4:c.934C>T	p.Arg312Ter	p.R312*	ENST00000435504		312	Cga/Tga																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068387	26068387	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	57	605	0	ENST00000435504.4:c.103C>A	p.Leu35Ile	p.L35I	ENST00000435504		35	Ctt/Att																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26101038	26101038	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	126	630	0	ENST00000435504.4:c.54G>T	p.Lys18Asn	p.K18N	ENST00000435504		18	aaG/aaT																																																																															
ALK	238	MSKCC	GRCh37	2	29456525	29456525	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	52	843	0	ENST00000389048.3:c.2393A>G	p.Asn798Ser	p.N798S	ENST00000389048	NM_004304.4	798	aAc/aGc																																																																															
ALK	238	MSKCC	GRCh37	2	30143132	30143132	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1262491330		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	80	720	0	ENST00000389048.3:c.394G>A	p.Val132Met	p.V132M	ENST00000389048	NM_004304.4	132	Gtg/Atg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39240688	39240688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	65	651	0	ENST00000402219.2:c.2080C>T	p.Arg694Trp	p.R694W	ENST00000402219	NM_005633.3	694	Cgg/Tgg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47656970	47656970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757276241		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	145	496	0	ENST00000233146.2:c.1166G>A	p.Arg389Gln	p.R389Q	ENST00000233146	NM_000251.2	389	cGa/cAa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47698180	47698180	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs63751411		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	94	520	0	ENST00000233146.2:c.1738G>T	p.Glu580Ter	p.E580*	ENST00000233146	NM_000251.2	580	Gaa/Taa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703539	47703539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1203462814		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	129	694	1	ENST00000233146.2:c.2039G>A	p.Arg680Gln	p.R680Q	ENST00000233146	NM_000251.2	680	cGa/cAa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47709930	47709930	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	70	505	0	ENST00000233146.2:c.2647A>C	p.Ile883Leu	p.I883L	ENST00000233146	NM_000251.2	883	Att/Ctt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47710035	47710035	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	94	446	0	ENST00000233146.2:c.2752A>C	p.Lys918Gln	p.K918Q	ENST00000233146	NM_000251.2	918	Aag/Cag																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026616	48026616	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	109	531	0	ENST00000234420.5:c.1494G>T	p.Lys498Asn	p.K498N	ENST00000234420	NM_000179.2	498	aaG/aaT																																																																															
REL	5966	MSKCC	GRCh37	2	61149342	61149342	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	111	486	0	ENST00000295025.8:c.1532A>G	p.Asn511Ser	p.N511S	ENST00000295025	NM_002908.2	511	aAt/aGt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266136	198266136	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	131	512	0	ENST00000335508.6:c.2484A>C	p.Arg828Ser	p.R828S	ENST00000335508	NM_012433.2	828	agA/agC																																																																															
CASP8	841	MSKCC	GRCh37	2	202141632	202141632	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764461240		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	130	578	0	ENST00000358485.4:c.920G>A	p.Arg307Gln	p.R307Q	ENST00000358485	NM_001080125.1	307	cGg/cAg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251876	212251876	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	41	312	0	ENST00000342788.4:c.3184-1G>T		p.X1062_splice	ENST00000342788	NM_005235.2	1062																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212285182	212285182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	110	565	0	ENST00000342788.4:c.3119G>T	p.Arg1040Ile	p.R1040I	ENST00000342788	NM_005235.2	1040	aGa/aTa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212495220	212495220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	189	654	0	ENST00000342788.4:c.2046G>T	p.Lys682Asn	p.K682N	ENST00000342788	NM_005235.2	682	aaG/aaT																																																																															
CUL3	8452	MSKCC	GRCh37	2	225343000	225343000	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371342121		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	227	888	2	ENST00000264414.4:c.2092G>A	p.Asp698Asn	p.D698N	ENST00000264414	NM_003590.4	698	Gac/Aac																																																																															
CUL3	8452	MSKCC	GRCh37	2	225422393	225422393	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1417750087		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	169	642	0	ENST00000264414.4:c.247G>A	p.Glu83Lys	p.E83K	ENST00000264414	NM_003590.4	83	Gaa/Aaa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662061	227662061	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1466090544		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	112	674	0	ENST00000305123.5:c.1394A>G	p.Tyr465Cys	p.Y465C	ENST00000305123	NM_005544.2	465	tAt/tGt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662637	227662637	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755496379		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	131	620	0	ENST00000305123.5:c.818C>T	p.Ser273Leu	p.S273L	ENST00000305123	NM_005544.2	273	tCg/tTg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523271	9523271	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775109543		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	78	621	1	ENST00000353224.5:c.1966C>T	p.Arg656Trp	p.R656W	ENST00000353224	NM_177990.2	656	Cgg/Tgg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538366	9538366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	95	497	0	ENST00000353224.5:c.1632G>T	p.Gln544His	p.Q544H	ENST00000353224	NM_177990.2	544	caG/caT																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31015953	31015953	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745960978		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	53	494	1	ENST00000375687.4:c.275G>A	p.Arg92His	p.R92H	ENST00000375687	NM_015338.5	92	cGc/cAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024947	31024947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	153	637	1	ENST00000375687.4:c.4432G>A	p.Ala1478Thr	p.A1478T	ENST00000375687	NM_015338.5	1478	Gca/Aca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40710547	40710547	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	149	707	0	ENST00000373198.4:c.4304A>G	p.Asn1435Ser	p.N1435S	ENST00000373198	NM_133170.3	1435	aAc/aGc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743943	40743943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs763964405		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	66	589	1	ENST00000373198.4:c.3052C>T	p.Arg1018Ter	p.R1018*	ENST00000373198	NM_133170.3	1018	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827900	40827900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	131	698	0	ENST00000373198.4:c.2528C>A	p.Ser843Tyr	p.S843Y	ENST00000373198	NM_133170.3	843	tCt/tAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40911144	40911144	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776134993		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	115	603	1	ENST00000373198.4:c.2161C>T	p.Arg721Cys	p.R721C	ENST00000373198	NM_133170.3	721	Cgt/Tgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944424	40944424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	115	763	0	ENST00000373198.4:c.2078C>A	p.Pro693His	p.P693H	ENST00000373198	NM_133170.3	693	cCt/cAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076862	41076862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs750249800		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	76	559	2	ENST00000373198.4:c.1558G>A	p.Glu520Lys	p.E520K	ENST00000373198	NM_133170.3	520	Gag/Aag																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46268443	46268443	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	70	520	0	ENST00000371998.3:c.2830G>T	p.Asp944Tyr	p.D944Y	ENST00000371998		944	Gat/Tat																																																																															
ERG	2078	MSKCC	GRCh37	21	39775499	39775499	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	157	764	2	ENST00000288319.7:c.521A>G	p.Asp174Gly	p.D174G	ENST00000288319	NM_182918.3	174	gAc/gGc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42842584	42842584	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147233451		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	73	725	2	ENST00000398585.3:c.1273G>A	p.Glu425Lys	p.E425K	ENST00000398585	NM_001135099.1	425	Gag/Aag																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29095890	29095890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	57	720	0	ENST00000328354.6:c.944G>A	p.Gly315Glu	p.G315E	ENST00000328354	NM_007194.3	315	gGg/gAg																																																																															
RAC2	5880	MSKCC	GRCh37	22	37628873	37628873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	138	698	1	ENST00000249071.6:c.193G>A	p.Asp65Asn	p.D65N	ENST00000249071	NM_002872.4	65	Gac/Aac																																																																															
EP300	2033	MSKCC	GRCh37	22	41546153	41546153	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	71	456	0	ENST00000263253.7:c.2768C>A	p.Ser923Tyr	p.S923Y	ENST00000263253	NM_001429.3	923	tCt/tAt																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	90	362	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266655	41266655	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200968230		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	157	581	1	ENST00000349496.5:c.452G>A	p.Arg151His	p.R151H	ENST00000349496	NM_001904.3	151	cGt/cAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47058692	47058692	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	146	728	0	ENST00000409792.3:c.7586A>G	p.Asp2529Gly	p.D2529G	ENST00000409792	NM_014159.6	2529	gAc/gGc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162080	47162080	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	26	505	0	ENST00000409792.3:c.4046T>G	p.Phe1349Cys	p.F1349C	ENST00000409792	NM_014159.6	1349	tTt/tGt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637738	52637738	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	105	611	0	ENST00000394830.3:c.2578G>T	p.Glu860Ter	p.E860*	ENST00000394830	NM_018313.4	860	Gaa/Taa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026810	71026810	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	116	473	0	ENST00000318789.4:c.1412C>A	p.Ala471Glu	p.A471E	ENST00000318789	NM_032682.5	471	gCa/gAa																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665096	138665096	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758370933		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	56	308	0	ENST00000330315.3:c.469C>T	p.Pro157Ser	p.P157S	ENST00000330315	NM_023067.3	157	Ccc/Tcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	186	776	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917555	178917555	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	160	603	0	ENST00000263967.3:c.430C>A	p.Leu144Met	p.L144M	ENST00000263967	NM_006218.2	144	Ctg/Atg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921533	178921533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	108	520	0	ENST00000263967.3:c.1015C>T	p.Leu339Phe	p.L339F	ENST00000263967	NM_006218.2	339	Ctt/Ttt																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182665375	182665375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	103	508	0	ENST00000292782.4:c.566G>A	p.Arg189Lys	p.R189K	ENST00000292782	NM_020640.2	189	aGa/aAa																																																																															
BCL6	604	MSKCC	GRCh37	3	187440346	187440346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	86	640	0	ENST00000232014.4:c.2021G>A	p.Arg674Gln	p.R674Q	ENST00000232014	NM_001130845.1	674	cGa/cAa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902755	1902755	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	81	783	0	ENST00000382895.3:c.374A>C	p.Lys125Thr	p.K125T	ENST00000382895	NM_133330.2	125	aAg/aCg																																																																															
KIT	3815	MSKCC	GRCh37	4	55561767	55561767	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780349712		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	105	511	1	ENST00000288135.5:c.157G>A	p.Glu53Lys	p.E53K	ENST00000288135	NM_000222.2	53	Gag/Aag																																																																															
KIT	3815	MSKCC	GRCh37	4	55589752	55589752	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	90	422	0	ENST00000288135.5:c.1234A>C	p.Lys412Gln	p.K412Q	ENST00000288135	NM_000222.2	412	Aaa/Caa																																																																															
KIT	3815	MSKCC	GRCh37	4	55599320	55599320	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913506		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	139	643	0	ENST00000288135.5:c.2446G>T	p.Asp816Tyr	p.D816Y	ENST00000288135	NM_000222.2	816	Gac/Tac																																																																															
KDR	3791	MSKCC	GRCh37	4	55955616	55955616	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	93	611	0	ENST00000263923.4:c.3329A>C	p.Lys1110Thr	p.K1110T	ENST00000263923	NM_002253.2	1110	aAg/aCg																																																																															
KDR	3791	MSKCC	GRCh37	4	55972940	55972940	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	160	810	0	ENST00000263923.4:c.1450G>T	p.Glu484Ter	p.E484*	ENST00000263923	NM_002253.2	484	Gaa/Taa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270111	66270111	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs539707153		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	136	517	1	ENST00000273854.3:c.1771G>A	p.Gly591Ser	p.G591S	ENST00000273854	NM_004439.5	591	Ggc/Agc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467874	66467874	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	124	498	0	ENST00000273854.3:c.395T>G	p.Phe132Cys	p.F132C	ENST00000273854	NM_004439.5	132	tTt/tGt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535365	66535365	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	144	704	0	ENST00000273854.3:c.96C>A	p.Tyr32Ter	p.Y32*	ENST00000273854	NM_004439.5	32	taC/taA																																																																															
TET2	54790	MSKCC	GRCh37	4	106157311	106157311	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	143	611	2	ENST00000380013.4:c.2212C>A	p.Leu738Ile	p.L738I	ENST00000380013	NM_001127208.2	738	Ctc/Atc																																																																															
TET2	54790	MSKCC	GRCh37	4	106193749	106193749	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs552345702		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	29	329	0	ENST00000380013.4:c.4211G>A	p.Arg1404Gln	p.R1404Q	ENST00000380013	NM_001127208.2	1404	cGa/cAa																																																																															
TET2	54790	MSKCC	GRCh37	4	106197030	106197030	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs572196470		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	72	393	0	ENST00000380013.4:c.5363A>G	p.Asp1788Gly	p.D1788G	ENST00000380013	NM_001127208.2	1788	gAc/gGc																																																																															
TET2	54790	MSKCC	GRCh37	4	106197563	106197563	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745668941		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	135	487	0	ENST00000380013.4:c.5896C>T	p.Arg1966Cys	p.R1966C	ENST00000380013	NM_001127208.2	1966	Cgt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	173	716	1	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518086	187518086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200185840		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	158	663	2	ENST00000441802.2:c.12608G>A	p.Arg4203His	p.R4203H	ENST00000441802	NM_005245.3	4203	cGt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542509	187542509	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	71	655	0	ENST00000441802.2:c.5231G>T	p.Gly1744Val	p.G1744V	ENST00000441802	NM_005245.3	1744	gGt/gTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549409	187549409	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs562017880		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	217	732	0	ENST00000441802.2:c.4709G>A	p.Arg1570Gln	p.R1570Q	ENST00000441802	NM_005245.3	1570	cGg/cAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629661	187629661	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	105	658	1	ENST00000441802.2:c.1321A>C	p.Ser441Arg	p.S441R	ENST00000441802	NM_005245.3	441	Agt/Cgt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630967	187630967	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	86	612	0	ENST00000441802.2:c.15G>T	p.Leu5Phe	p.L5F	ENST00000441802	NM_005245.3	5	ttG/ttT																																																																															
TERT	7015	MSKCC	GRCh37	5	1294255	1294255	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1174718400		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	124	686	0	ENST00000310581.5:c.746C>T	p.Thr249Met	p.T249M	ENST00000310581	NM_198253.2	249	aCg/aTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1294532	1294532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1360708027		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	97	642	1	ENST00000310581.5:c.469G>A	p.Ala157Thr	p.A157T	ENST00000310581	NM_198253.2	157	Gcg/Acg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515239	31515239	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1478716580		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	136	861	0	ENST00000344624.3:c.1146G>T	p.Lys382Asn	p.K382N	ENST00000344624		382	aaG/aaT																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950669	38950669	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	95	539	0	ENST00000357387.3:c.3281T>C	p.Val1094Ala	p.V1094A	ENST00000357387	NM_152756.3	1094	gTg/gCg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38963141	38963141	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs749429040		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	81	281	0	ENST00000357387.3:c.1403G>A	p.Arg468Gln	p.R468Q	ENST00000357387	NM_152756.3	468	cGa/cAa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38982073	38982073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	136	627	0	ENST00000357387.3:c.649G>A	p.Asp217Asn	p.D217N	ENST00000357387	NM_152756.3	217	Gat/Aat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56170985	56170985	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	105	387	0	ENST00000399503.3:c.1813A>C	p.Asn605His	p.N605H	ENST00000399503	NM_005921.1	605	Aat/Cat																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751565	57751565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	134	403	0	ENST00000274289.3:c.1426G>A	p.Ala476Thr	p.A476T	ENST00000274289	NM_006622.3	476	Gca/Aca																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	129	440	2	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86627297	86627297	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	123	486	0	ENST00000274376.6:c.672G>T	p.Met224Ile	p.M224I	ENST00000274376	NM_002890.2	224	atG/atT																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672759	86672759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	134	484	1	ENST00000274376.6:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000274376	NM_002890.2	749	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112116503	112116503	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	38	409	0	ENST00000257430.4:c.548A>G	p.Asp183Gly	p.D183G	ENST00000257430	NM_000038.5	183	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	111	508	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	126	456	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175814	112175814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	40	353	0	ENST00000257430.4:c.4523C>A	p.Ala1508Asp	p.A1508D	ENST00000257430	NM_000038.5	1508	gCt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112179524	112179524	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587779809		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	107	479	1	ENST00000257430.4:c.8233C>T	p.Pro2745Ser	p.P2745S	ENST00000257430	NM_000038.5	2745	Cct/Tct																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460545	149460545	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	140	725	0	ENST00000286301.3:c.92T>C	p.Val31Ala	p.V31A	ENST00000286301	NM_005211.3	31	gTc/gCc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562906	176562906	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	85	697	0	ENST00000439151.2:c.802G>T	p.Glu268Ter	p.E268*	ENST00000439151	NM_022455.4	268	Gaa/Taa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637607	176637607	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	119	693	0	ENST00000439151.2:c.2207C>A	p.Ser736Tyr	p.S736Y	ENST00000439151	NM_022455.4	736	tCt/tAt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046722	180046722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768562688		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	126	799	1	ENST00000261937.6:c.2590G>A	p.Ala864Thr	p.A864T	ENST00000261937	NM_182925.4	864	Gct/Act																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056376	180056376	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	92	748	0	ENST00000261937.6:c.868G>T	p.Glu290Ter	p.E290*	ENST00000261937	NM_182925.4	290	Gaa/Taa																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27777880	27777880	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	95	438	0	ENST00000369163.2:c.29A>C	p.Lys10Thr	p.K10T	ENST00000369163	NM_003536.2	10	aAg/aCg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673706	30673706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	172	694	0	ENST00000376406.3:c.3254G>A	p.Gly1085Glu	p.G1085E	ENST00000376406	NM_014641.2	1085	gGg/gAg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188007	32188007	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1227961128		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	121	865	0	ENST00000375023.3:c.1214C>T	p.Ala405Val	p.A405V	ENST00000375023	NM_004557.3	405	gCc/gTc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803500	32803500	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs550712305		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	175	764	0	ENST00000374899.4:c.659G>A	p.Arg220Gln	p.R220Q	ENST00000374899	NM_018833.2	220	cGa/cAa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106547352	106547352	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	59	591	0	ENST00000369096.4:c.589C>A	p.Leu197Ile	p.L197I	ENST00000369096	NM_001198.3	197	Ctt/Att																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553668	106553668	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1261004652		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	137	459	0	ENST00000369096.4:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000369096	NM_001198.3	545	Gaa/Aaa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117642495	117642495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs9489124		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	191	741	1	ENST00000368508.3:c.5704G>A	p.Glu1902Lys	p.E1902K	ENST00000368508	NM_002944.2	1902	Gaa/Aaa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117663679	117663679	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	51	534	0	ENST00000368508.3:c.4553A>G	p.Glu1518Gly	p.E1518G	ENST00000368508	NM_002944.2	1518	gAa/gGa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117704541	117704541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	23	588	0	ENST00000368508.3:c.2435C>T	p.Thr812Ile	p.T812I	ENST00000368508	NM_002944.2	812	aCc/aTc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023160	150023160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	145	698	1	ENST00000253339.5:c.103C>T	p.Arg35Trp	p.R35W	ENST00000253339		35	Cgg/Tgg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528673	157528673	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1226524520		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	90	652	0	ENST00000346085.5:c.6398C>T	p.Ala2133Val	p.A2133V	ENST00000346085	NM_020732.3	2133	gCg/gTg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729313	41729313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	133	555	0	ENST00000242208.4:c.1216G>A	p.Asp406Asn	p.D406N	ENST00000242208	NM_002192.2	406	Gat/Aat																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459493	50459493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	102	479	0	ENST00000331340.3:c.782C>A	p.Ser261Tyr	p.S261Y	ENST00000331340	NM_006060.4	261	tCt/tAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242511	55242511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs121913418		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	33	470	2	ENST00000275493.2:c.2281G>A	p.Asp761Asn	p.D761N	ENST00000275493	NM_005228.3	761	Gat/Aat																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508472	106508472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	42	236	1	ENST00000359195.3:c.466G>A	p.Ala156Thr	p.A156T	ENST00000359195	NM_002649.2	156	Gcg/Acg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509747	106509747	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761655879		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	129	617	2	ENST00000359195.3:c.1741G>A	p.Glu581Lys	p.E581K	ENST00000359195	NM_002649.2	581	Gaa/Aaa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520000	106520000	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs759433704		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	99	444	0	ENST00000359195.3:c.2428C>A	p.Pro810Thr	p.P810T	ENST00000359195	NM_002649.2	810	Cca/Aca																																																																															
SMO	6608	MSKCC	GRCh37	7	128845484	128845484	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755698791		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	165	749	1	ENST00000249373.3:c.781C>T	p.Arg261Cys	p.R261C	ENST00000249373	NM_005631.4	261	Cgc/Tgc																																																																															
SMO	6608	MSKCC	GRCh37	7	128850942	128850942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	100	572	0	ENST00000249373.3:c.1789G>A	p.Asp597Asn	p.D597N	ENST00000249373	NM_005631.4	597	Gac/Aac																																																																															
EZH2	2146	MSKCC	GRCh37	7	148543665	148543665	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	59	569	0	ENST00000320356.2:c.143A>G	p.Lys48Arg	p.K48R	ENST00000320356	NM_004456.4	48	aAa/aGa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874337	151874337	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	63	606	1	ENST00000262189.6:c.8201C>A	p.Thr2734Asn	p.T2734N	ENST00000262189	NM_170606.2	2734	aCt/aAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874613	151874613	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	55	520	0	ENST00000262189.6:c.7925C>A	p.Ser2642Tyr	p.S2642Y	ENST00000262189	NM_170606.2	2642	tCt/tAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884466	151884466	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1435892915		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	136	543	0	ENST00000262189.6:c.4889C>T	p.Ser1630Leu	p.S1630L	ENST00000262189	NM_170606.2	1630	tCg/tTg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38157028	38157028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	149	797	1	ENST00000317025.8:c.2692C>T	p.Arg898Cys	p.R898C	ENST00000317025	NM_023034.1	898	Cgt/Tgt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187215	38187215	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763425861		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	232	976	2	ENST00000317025.8:c.1262G>A	p.Arg421Gln	p.R421Q	ENST00000317025	NM_023034.1	421	cGa/cAa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187408	38187408	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1243215593		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	116	537	1	ENST00000317025.8:c.1069C>T	p.Arg357Trp	p.R357W	ENST00000317025	NM_023034.1	357	Cgg/Tgg																																																																															
LYN	4067	MSKCC	GRCh37	8	56922561	56922561	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	170	684	0	ENST00000519728.1:c.1431A>C	p.Lys477Asn	p.K477N	ENST00000519728	NM_002350.3	477	aaA/aaC																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992764	68992764	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs769067107		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	31	770	1	ENST00000288368.4:c.1729C>T	p.Arg577Ter	p.R577*	ENST00000288368	NM_024870.2	577	Cga/Tga																																																																															
PREX2	80243	MSKCC	GRCh37	8	69009351	69009351	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	160	581	1	ENST00000288368.4:c.2468A>G	p.Tyr823Cys	p.Y823C	ENST00000288368	NM_024870.2	823	tAt/tGt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69012039	69012039	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	157	710	0	ENST00000288368.4:c.2676A>C	p.Arg892Ser	p.R892S	ENST00000288368	NM_024870.2	892	agA/agC																																																																															
PREX2	80243	MSKCC	GRCh37	8	69012076	69012076	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	74	504	0	ENST00000288368.4:c.2713A>C	p.Lys905Gln	p.K905Q	ENST00000288368	NM_024870.2	905	Aag/Cag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69028029	69028029	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	133	694	0	ENST00000288368.4:c.3188A>C	p.Lys1063Thr	p.K1063T	ENST00000288368	NM_024870.2	1063	aAg/aCg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69058531	69058531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	196	819	1	ENST00000288368.4:c.4175C>A	p.Pro1392His	p.P1392H	ENST00000288368	NM_024870.2	1392	cCt/cAt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5066787	5066787	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs560489093		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	47	246	0	ENST00000381652.3:c.1324G>A	p.Glu442Lys	p.E442K	ENST00000381652	NM_004972.3	442	Gag/Aag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528648	8528648	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	74	501	1	ENST00000356435.5:c.484G>T	p.Asp162Tyr	p.D162Y	ENST00000356435		162	Gat/Tat																																																																															
PAX5	5079	MSKCC	GRCh37	9	36840615	36840615	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1282780266		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	64	597	1	ENST00000358127.4:c.1118G>A	p.Ser373Asn	p.S373N	ENST00000358127	NM_001280556.1	373	aGc/aAc																																																																															
PAX5	5079	MSKCC	GRCh37	9	37002648	37002648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	97	500	1	ENST00000358127.4:c.601G>A	p.Glu201Lys	p.E201K	ENST00000358127	NM_001280556.1	201	Gaa/Aaa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229567	98229567	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs778260156		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	131	613	1	ENST00000331920.6:c.2391C>A	p.Tyr797Ter	p.Y797*	ENST00000331920	NM_000264.3	797	taC/taA																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98268704	98268704	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774822170		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	122	464	1	ENST00000331920.6:c.379G>A	p.Glu127Lys	p.E127K	ENST00000331920	NM_000264.3	127	Gag/Aag																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249765	110249765	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1059912		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	157	708	0	ENST00000374672.4:c.910G>A	p.Asp304Asn	p.D304N	ENST00000374672	NM_004235.4	304	Gac/Aac																																																																															
ABL1	25	MSKCC	GRCh37	9	133750417	133750417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	44	681	0	ENST00000318560.5:c.1248C>A	p.Phe416Leu	p.F416L	ENST00000318560	NM_005157.4	416	ttC/ttA																																																																															
ABL1	25	MSKCC	GRCh37	9	133759442	133759442	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754252285		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	130	676	3	ENST00000318560.5:c.1765C>T	p.Arg589Cys	p.R589C	ENST00000318560	NM_005157.4	589	Cgc/Tgc																																																																															
ABL1	25	MSKCC	GRCh37	9	133759527	133759527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	88	743	2	ENST00000318560.5:c.1850G>A	p.Arg617His	p.R617H	ENST00000318560	NM_005157.4	617	cGc/cAc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135778026	135778026	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1336228562		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	74	636	2	ENST00000298552.3:c.2357G>A	p.Arg786Gln	p.R786Q	ENST00000298552	NM_001162426.1	786	cGa/cAa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135778098	135778098	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	186	693	0	ENST00000298552.3:c.2285A>C	p.Asn762Thr	p.N762T	ENST00000298552	NM_001162426.1	762	aAt/aCt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135787720	135787720	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770653972		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	70	626	0	ENST00000298552.3:c.862C>T	p.Arg288Cys	p.R288C	ENST00000298552	NM_001162426.1	288	Cgt/Tgt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135796804	135796804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1223799508		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	79	507	2	ENST00000298552.3:c.683G>A	p.Arg228Gln	p.R228Q	ENST00000298552	NM_001162426.1	228	cGa/cAa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797258	135797258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514834		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	18	402	1	ENST00000298552.3:c.611G>A	p.Arg204His	p.R204H	ENST00000298552	NM_001162426.1	204	cGt/cAt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931828	39931828	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	146	330	0	ENST00000378444.4:c.2771T>G	p.Phe924Cys	p.F924C	ENST00000378444	NM_001123385.1	924	tTt/tGt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929227	44929227	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	118	336	0	ENST00000377967.4:c.2327A>G	p.Asp776Gly	p.D776G	ENST00000377967	NM_021140.2	776	gAc/gGc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412094	63412094	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374751715		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	109	540	1	ENST00000330258.3:c.1073G>A	p.Arg358Gln	p.R358Q	ENST00000330258	NM_152424.3	358	cGa/cAa																																																																															
ATRX	546	MSKCC	GRCh37	X	76874295	76874295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	176	328	0	ENST00000373344.5:c.5427G>T	p.Glu1809Asp	p.E1809D	ENST00000373344	NM_000489.3	1809	gaG/gaT																																																																															
ATRX	546	MSKCC	GRCh37	X	76939761	76939761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	202	387	0	ENST00000373344.5:c.987G>T	p.Lys329Asn	p.K329N	ENST00000373344	NM_000489.3	329	aaG/aaT																																																																															
ATRX	546	MSKCC	GRCh37	X	76954099	76954099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	167	356	0	ENST00000373344.5:c.152G>A	p.Gly51Glu	p.G51E	ENST00000373344	NM_000489.3	51	gGa/gAa																																																																															
XIAP	331	MSKCC	GRCh37	X	123020225	123020225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	207	378	0	ENST00000355640.3:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000355640		238	cGa/cAa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123217381	123217381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	170	296	1	ENST00000218089.9:c.3035G>A	p.Arg1012Gln	p.R1012Q	ENST00000218089	NM_001042749.1	1012	cGa/cAa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6036981	6036981	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777286241		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	121	671	0	ENST00000265849.7:c.779C>T	p.Ser260Phe	p.S260F	ENST00000265849	NM_000535.5	260	tCc/tTc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0024223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	458	759	2	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243789	41243792	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-	rs80357868		P-0024223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	179	766	0	ENST00000357654.3:c.3756_3759del	p.Ser1253ArgfsTer10	p.S1253Rfs*10	ENST00000357654	NM_007294.3	1252	ctGTCT/ct																																																																															
CCNE1	898	MSKCC	GRCh37	19	30311669	30311669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	206	730	0	ENST00000262643.3:c.523C>T	p.Arg175Trp	p.R175W	ENST00000262643	NM_001238.2	175	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211767	36211768	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1247	141	1139	0	ENST00000222270.7:c.1520dup	p.Glu508GlyfsTer42	p.E508Gfs*42	ENST00000222270	NM_014727.1	506	-/C																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214704	36214704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	84	705	2	ENST00000222270.7:c.3130G>A	p.Gly1044Ser	p.G1044S	ENST00000222270	NM_014727.1	1044	Ggc/Agc																																																																															
ATR	545	MSKCC	GRCh37	3	142279295	142279295	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0024223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	157	535	0	ENST00000350721.4:c.1351A>T	p.Ile451Phe	p.I451F	ENST00000350721	NM_001184.3	451	Att/Ttt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645118	86645118	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	106	575	1	ENST00000274376.6:c.1190A>C	p.Gln397Pro	p.Q397P	ENST00000274376	NM_002890.2	397	cAg/cCg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0026141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7175	1102	645	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0026141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	6497	659	11	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112380	115112380	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374981272		P-0026141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	206	484	0	ENST00000257566.3:c.1360C>T	p.Arg454Cys	p.R454C	ENST00000257566	NM_016569.3	454	Cgc/Tgc																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873761	35873761	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1094	199	591	0	ENST00000216797.5:c.90C>A	p.His30Gln	p.H30Q	ENST00000216797	NM_020529.2	30	caC/caA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577101	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTC	CTCTC	-			P-0026141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	449	744	0	ENST00000269305.4:c.837_841del	p.Arg280ProfsTer24	p.R280Pfs*24	ENST00000269305	NM_001126112.2	279	ggGAGAGac/ggac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	72	187	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0026305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	108	303	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913384		P-0026305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	106	279	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123260396	123260396	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	33	292	0	ENST00000358487.5:c.1505G>C	p.Gly502Ala	p.G502A	ENST00000358487	NM_000141.4	502	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577564	7577564	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057522275		P-0026371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	57	496	0	ENST00000269305.4:c.717C>G	p.Asn239Lys	p.N239K	ENST00000269305	NM_001126112.2	239	aaC/aaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577572	7577572	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	61	487	0	ENST00000269305.4:c.709A>C	p.Met237Leu	p.M237L	ENST00000269305	NM_001126112.2	237	Atg/Ctg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242482	+	protein_altering_variant	In_Frame_Del	DEL	GAATTAAGAGAAGCAAC	GAATTAAGAGAAGCAAC	AT	rs727504402		P-0026371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	31	453	2	ENST00000275493.2:c.2236_2252delinsAT	p.Glu746_Thr751delinsIle	p.E746_T751delinsI	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCAACa/ATa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0027020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	211	457	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631102	69631102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121917704		P-0027020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	130	570	1	ENST00000334134.2:c.310C>T	p.Arg104Ter	p.R104*	ENST00000334134	NM_005247.2	104	Cga/Tga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47205368	47205368	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	156	473	0	ENST00000409792.3:c.47A>G	p.Tyr16Cys	p.Y16C	ENST00000409792	NM_014159.6	16	tAc/tGc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67655479	67655479	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs769948988		P-0027020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	246	481	0	ENST00000264010.4:c.1342C>T	p.Arg448Ter	p.R448*	ENST00000264010	NM_006565.3	448	Cga/Tga																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873686	35873727	+	inframe_deletion	In_Frame_Del	DEL	CTCGAGGCGGATCTCCTGCAGCTCCTTGACCATCTGCTCGTA	CTCGAGGCGGATCTCCTGCAGCTCCTTGACCATCTGCTCGTA	-			P-0027020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	210	444	0	ENST00000216797.5:c.124_165del	p.Tyr42_Glu55del	p.Y42_E55del	ENST00000216797	NM_020529.2	42	TACGAGCAGATGGTCAAGGAGCTGCAGGAGATCCGCCTCGAG/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578562	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGTACTGTAGGA	GAGTACTGTAGGA	-			P-0027020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	346	706	0	ENST00000269305.4:c.376-8_380del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
RNF43	54894	MSKCC	GRCh37	17	56436082	56436083	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	106	471	0	ENST00000407977.2:c.1054dup	p.His352ProfsTer91	p.H352Pfs*91	ENST00000407977		352	cac/cCac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	113	869	0	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc																																																																															
RARA	5914	MSKCC	GRCh37	17	38508754	38508754	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	65	564	0	ENST00000254066.5:c.802A>T	p.Ile268Phe	p.I268F	ENST00000254066	NM_000964.3	268	Atc/Ttc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630587	187630587	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770123806		P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	83	688	0	ENST00000441802.2:c.395G>A	p.Arg132Gln	p.R132Q	ENST00000441802	NM_005245.3	132	cGa/cAa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955132	17955132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	99	869	1	ENST00000458235.1:c.95C>A	p.Ala32Asp	p.A32D	ENST00000458235	NM_000215.3	32	gCt/gAt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176118146	176118146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	40	360	0	ENST00000367669.3:c.827G>T	p.Arg276Ile	p.R276I	ENST00000367669	NM_022457.5	276	aGa/aTa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097648	8097648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	76	307	0	ENST00000346208.3:c.30G>T	p.Trp10Cys	p.W10C	ENST00000346208		10	tgG/tgT																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741493	17741493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	63	722	1	ENST00000250003.3:c.164C>A	p.Ala55Glu	p.A55E	ENST00000250003	NM_002478.4	55	gCg/gAg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202072	67202072	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	124	789	0	ENST00000312629.5:c.1175C>G	p.Pro392Arg	p.P392R	ENST00000312629	NM_003952.2	392	cCg/cGg																																																																															
ATM	472	MSKCC	GRCh37	11	108123552	108123552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	33	468	0	ENST00000278616.4:c.1811C>A	p.Pro604His	p.P604H	ENST00000278616	NM_000051.3	604	cCt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433086	49433086	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	153	837	0	ENST00000301067.7:c.8285G>T	p.Gly2762Val	p.G2762V	ENST00000301067	NM_003482.3	2762	gGg/gTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001457	29001458	+	splice_acceptor_variant,intron_variant	Splice_Site	DNP	TG	TG	CT			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	29	271	0	ENST00000282397.4:c.1277-3_1277-2delinsAG		p.X426_splice	ENST00000282397	NM_002019.4	426																																																																																
CYSLTR2	57105	MSKCC	GRCh37	13	49281871	49281871	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs200853229		P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	83	653	0	ENST00000282018.3:c.918C>A	p.Tyr306Ter	p.Y306*	ENST00000282018	NM_020377.2	306	taC/taA																																																																															
TSHR	7253	MSKCC	GRCh37	14	81534636	81534636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	44	671	1	ENST00000298171.2:c.281C>T	p.Ser94Leu	p.S94L	ENST00000298171	NM_000369.2	94	tCa/tTa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95572475	95572475	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	80	538	0	ENST00000343455.3:c.2890G>T	p.Glu964Ter	p.E964*	ENST00000343455	NM_177438.2	964	Gag/Tag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640500	3640500	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	77	806	0	ENST00000294008.3:c.3139G>T	p.Gly1047Trp	p.G1047W	ENST00000294008	NM_032444.2	1047	Ggg/Tgg																																																																															
RARA	5914	MSKCC	GRCh37	17	38511548	38511548	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	104	605	0	ENST00000254066.5:c.1046A>G	p.Asp349Gly	p.D349G	ENST00000254066	NM_000964.3	349	gAc/gGc																																																																															
YES1	7525	MSKCC	GRCh37	18	743344	743344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1341514002		P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	107	620	0	ENST00000314574.4:c.796G>A	p.Ala266Thr	p.A266T	ENST00000314574	NM_005433.3	266	Gca/Aca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220895	36220895	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	39	247	0	ENST00000222270.7:c.4945G>T	p.Ala1649Ser	p.A1649S	ENST00000222270	NM_014727.1	1649	Gcc/Tcc																																																																															
CIC	23152	MSKCC	GRCh37	19	42791754	42791754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	59	706	2	ENST00000575354.2:c.640C>T	p.His214Tyr	p.H214Y	ENST00000575354	NM_015125.3	214	Cac/Tac																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906412	50906412	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	51	810	2	ENST00000440232.2:c.1073G>T	p.Arg358Leu	p.R358L	ENST00000440232	NM_002691.3	358	cGg/cTg																																																																															
ALK	238	MSKCC	GRCh37	2	29543739	29543739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	53	530	1	ENST00000389048.3:c.1424C>T	p.Pro475Leu	p.P475L	ENST00000389048	NM_004304.4	475	cCt/cTt																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793293	242793293	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	53	876	1	ENST00000334409.5:c.784C>A	p.Pro262Thr	p.P262T	ENST00000334409	NM_005018.2	262	Ccc/Acc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851573	134851573	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	73	566	0	ENST00000398015.3:c.979C>A	p.Arg327Ser	p.R327S	ENST00000398015	NM_004441.4	327	Cgc/Agc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138474638	138474638	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	49	668	0	ENST00000289153.2:c.355G>C	p.Gly119Arg	p.G119R	ENST00000289153	NM_006219.2	119	Ggg/Cgg																																																																															
KDR	3791	MSKCC	GRCh37	4	55976570	55976570	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	56	491	0	ENST00000263923.4:c.1255G>T	p.Val419Phe	p.V419F	ENST00000263923	NM_002253.2	419	Gtc/Ttc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143029312	143029312	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	26	377	0	ENST00000262992.4:c.2308A>T	p.Asn770Tyr	p.N770Y	ENST00000262992	NM_001101669.1	770	Aat/Tat																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876334	35876334	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1261225210		P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	74	557	1	ENST00000303115.3:c.1126G>T	p.Ala376Ser	p.A376S	ENST00000303115	NM_002185.3	376	Gca/Tca																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721296	176721296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	62	412	0	ENST00000439151.2:c.6927G>T	p.Leu2309Phe	p.L2309F	ENST00000439151	NM_022455.4	2309	ttG/ttT																																																																															
MET	4233	MSKCC	GRCh37	7	116412033	116412049	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTCCAGAAGGTATAT	TTTTCCAGAAGGTATAT	-			P-0027826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	573	871	1	ENST00000397752.3:c.3020_3028+8del		p.X1007_splice	ENST00000397752	NM_000245.2	1007																																																																																
CBL	867	MSKCC	GRCh37	11	119170399	119170399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	66	532	1	ENST00000264033.4:c.2629G>T	p.Ala877Ser	p.A877S	ENST00000264033	NM_005188.3	877	Gct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0027860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	178	575	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540652		P-0027860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	225	657	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390186	89390186	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	136	407	0	ENST00000336596.2:c.935G>T	p.Arg312Leu	p.R312L	ENST00000336596	NM_005233.5	312	cGg/cTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0027860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	49	511	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191218	185191218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	54	419	0	ENST00000265026.3:c.2099C>T	p.Ser700Phe	p.S700F	ENST00000265026	NM_004721.4	700	tCc/tTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0027860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	166	692	0	ENST00000304494.5:c.457+1G>T		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	191	444	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577555	7577555	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	348	581	0	ENST00000269305.4:c.726C>A	p.Cys242Ter	p.C242*	ENST00000269305	NM_001126112.2	242	tgC/tgA																																																																															
RHEB	6009	MSKCC	GRCh37	7	151216555	151216648	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	GGTAGCCCAGGATCGCGATCTTCCGGGACTTGGACTGCGGCATCTTGGCGGCCTCCTCAGCCCCGGCCCAACCACATCAACCGCGGCGGCGGTG	GGTAGCCCAGGATCGCGATCTTCCGGGACTTGGACTGCGGCATCTTGGCGGCCTCCTCAGCCCCGGCCCAACCACATCAACCGCGGCGGCGGTG	AGTA			P-0028207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	10	243	0	ENST00000262187.5:c.-51_43delinsTACT		p.*17*	ENST00000262187	NM_005614.3																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0028262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	501	335	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346311	73346311	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	29	308	0	ENST00000377767.4:c.1489A>C	p.Asn497His	p.N497H	ENST00000377767	NM_014953.3	497	Aat/Cat																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259288	36259292	+	protein_altering_variant	In_Frame_Del	DEL	GCCAG	GCCAG	CA			P-0028262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	286	268	1	ENST00000300305.3:c.199_203delinsTG	p.Leu67_Ala68delinsCys	p.L67_A68delinsC	ENST00000300305		67	CTGGCc/TGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	472	248	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0028691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	979	686	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
RB1	5925	MSKCC	GRCh37	13	49030465	49030466	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0028691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	309	255	10	ENST00000267163.4:c.1941_1942del	p.Ser648ThrfsTer4	p.S648Tfs*4	ENST00000267163	NM_000321.2	647	cTT/c																																																																															
SMYD3	64754	MSKCC	GRCh37	1	245912902	245912902	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1331325646		P-0028691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	117	242	0	ENST00000388985.4:c.1250T>G	p.Leu417Arg	p.L417R	ENST00000388985		417	cTt/cGt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137029	64137029	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	259	632	0	ENST00000334205.4:c.1540G>C	p.Val514Leu	p.V514L	ENST00000334205	NM_003942.2	514	Gtg/Ctg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436585	110436585	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1092	299	725	1	ENST00000375856.3:c.1816T>C	p.Ser606Pro	p.S606P	ENST00000375856	NM_003749.2	606	Tcg/Ccg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149510189	149510189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	200	517	0	ENST00000261799.4:c.1280C>T	p.Pro427Leu	p.P427L	ENST00000261799	NM_002609.3	427	cCt/cTt																																																																															
CDH1	999	MSKCC	GRCh37	16	68853200	68853201	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0030800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	285	608	0	ENST00000261769.5:c.1585_1586del	p.Thr529CysfsTer7	p.T529Cfs*7	ENST00000261769	NM_004360.3	528	gAC/g																																																																															
TET2	54790	MSKCC	GRCh37	4	106197599	106197599	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs555385319		P-0030800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	168	455	0	ENST00000380013.4:c.5932G>A	p.Val1978Met	p.V1978M	ENST00000380013	NM_001127208.2	1978	Gtg/Atg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542593	187542593	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	213	533	0	ENST00000441802.2:c.5147C>G	p.Ser1716Cys	p.S1716C	ENST00000441802	NM_005245.3	1716	tCt/tGt																																																																															
CDK6	1021	MSKCC	GRCh37	7	92462501	92462501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	264	617	2	ENST00000265734.4:c.137G>A	p.Arg46Gln	p.R46Q	ENST00000265734	NM_001259.6	46	cGg/cAg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139820290	139820290	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	270	695	0	ENST00000247668.2:c.1443G>C	p.Lys481Asn	p.K481N	ENST00000247668	NM_021138.3	481	aaG/aaC																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784404	9784404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	245	591	0	ENST00000377346.4:c.2789T>C	p.Val930Ala	p.V930A	ENST00000377346	NM_005026.3	930	gTc/gCc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11168277	11168277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	69	570	0	ENST00000361445.4:c.7595C>T	p.Ala2532Val	p.A2532V	ENST00000361445	NM_004958.3	2532	gCg/gTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190747	11190747	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759603938		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	137	656	1	ENST00000361445.4:c.5452C>T	p.Arg1818Cys	p.R1818C	ENST00000361445	NM_004958.3	1818	Cgt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256633	16256634	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	160	421	0	ENST00000375759.3:c.3899_3900del	p.Ile1300AsnfsTer10	p.I1300Nfs*10	ENST00000375759	NM_015001.2	1300	ATa/a																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932103	36932103	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	147	446	0	ENST00000361632.4:c.2366A>G	p.Asn789Ser	p.N789S	ENST00000361632		789	aAc/aGc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932353	36932353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	282	687	1	ENST00000361632.4:c.2116C>T	p.Pro706Ser	p.P706S	ENST00000361632		706	Ccg/Tcg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	159	408	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1181132297		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	94	462	0	ENST00000342505.4:c.1016del	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																															
NRAS	4893	MSKCC	GRCh37	1	115251236	115251236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	173	547	0	ENST00000369535.4:c.490C>T	p.Arg164Cys	p.R164C	ENST00000369535	NM_002524.4	164	Cgc/Tgc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851325	156851325	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201891311		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	113	582	0	ENST00000524377.1:c.2282G>A	p.Arg761Gln	p.R761Q	ENST00000524377	NM_002529.3	761	cGg/cAg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729671	162729671	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376303676		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	166	461	1	ENST00000367921.3:c.757G>A	p.Gly253Ser	p.G253S	ENST00000367921	NM_006182.2	253	Ggc/Agc																																																																															
TET1	80312	MSKCC	GRCh37	10	70441195	70441195	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	138	521	0	ENST00000373644.4:c.4864C>T	p.Arg1622Ter	p.R1622*	ENST00000373644	NM_030625.2	1622	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685298	89685298	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	124	324	0	ENST00000371953.3:c.193T>C	p.Tyr65His	p.Y65H	ENST00000371953	NM_000314.4	65	Tac/Cac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89693003	89693003	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	54	317	0	ENST00000371953.3:c.491del	p.Lys164ArgfsTer3	p.K164Rfs*3	ENST00000371953	NM_000314.4	163	Aaa/aa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373348	118373348	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	115	436	0	ENST00000534358.1:c.6741T>A	p.Asp2247Glu	p.D2247E	ENST00000534358	NM_005933.3	2247	gaT/gaA																																																																															
CBL	867	MSKCC	GRCh37	11	119145604	119145604	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	93	383	1	ENST00000264033.4:c.815del	p.Leu272Ter	p.L272*	ENST00000264033	NM_005188.3	270	gcT/gc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	317	425	5	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21628513	21628513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	201	540	0	ENST00000421138.2:c.1105G>A	p.Val369Met	p.V369M	ENST00000421138		369	Gtg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424180	49424180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	181	412	0	ENST00000301067.7:c.13882C>T	p.Pro4628Ser	p.P4628S	ENST00000301067	NM_003482.3	4628	Ccc/Tcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446151	49446151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	271	641	0	ENST00000301067.7:c.1315C>T	p.Pro439Ser	p.P439S	ENST00000301067	NM_003482.3	439	Cca/Tca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447925	49447925	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	125	333	0	ENST00000301067.7:c.511-2A>G		p.X171_splice	ENST00000301067	NM_003482.3	171																																																																																
FLT1	2321	MSKCC	GRCh37	13	28877335	28877335	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750851829		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	137	453	0	ENST00000282397.4:c.3986C>T	p.Ser1329Leu	p.S1329L	ENST00000282397	NM_002019.4	1329	tCg/tTg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061063	38061064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	97	201	0	ENST00000250448.2:c.925dup	p.Leu309ProfsTer106	p.L309Pfs*106	ENST00000250448	NM_004496.3	309	ctc/cCtc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562347	95562347	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140875148		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	69	367	0	ENST00000343455.3:c.4910C>T	p.Ser1637Leu	p.S1637L	ENST00000343455	NM_177438.2	1637	tCg/tTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562994	95562995	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCC			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	105	353	0	ENST00000343455.3:c.4260_4262dup	p.Glu1420dup	p.E1420dup	ENST00000343455	NM_177438.2	1420	gat/gaGGAt																																																																															
GREM1	26585	MSKCC	GRCh37	15	33022990	33022990	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	42	337	0	ENST00000300177.4:c.104del	p.Pro35ArgfsTer49	p.P35Rfs*49	ENST00000300177	NM_001191322.1	33	atC/at																																																																															
MGA	23269	MSKCC	GRCh37	15	42026766	42026766	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	166	386	0	ENST00000219905.7:c.3890T>C	p.Leu1297Ser	p.L1297S	ENST00000219905	NM_001164273.1	1297	tTg/tCg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99478609	99478609	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1330526325		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	87	422	0	ENST00000268035.6:c.3251G>A	p.Arg1084Gln	p.R1084Q	ENST00000268035	NM_000875.3	1084	cGg/cAg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2106666	2106666	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772558666		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	248	628	0	ENST00000219476.3:c.670G>A	p.Ala224Thr	p.A224T	ENST00000219476	NM_000548.3	224	Gcc/Acc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2110762	2110762	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	139	813	0	ENST00000219476.3:c.1067T>C	p.Val356Ala	p.V356A	ENST00000219476	NM_000548.3	356	gTg/gCg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777952	3777952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	392	967	1	ENST00000262367.5:c.7096C>T	p.Arg2366Trp	p.R2366W	ENST00000262367	NM_004380.2	2366	Cgg/Tgg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032332	10032332	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	43	372	0	ENST00000330684.3:c.491A>G	p.Asp164Gly	p.D164G	ENST00000330684	NM_001134407.1	164	gAt/gGt																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041627	14041627	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	175	420	0	ENST00000311895.7:c.2174A>C	p.Glu725Ala	p.E725A	ENST00000311895	NM_005236.2	725	gAg/gCg																																																																															
CDH1	999	MSKCC	GRCh37	16	68771325	68771325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	45	227	0	ENST00000261769.5:c.7C>A	p.Pro3Thr	p.P3T	ENST00000261769	NM_004360.3	3	Cct/Act																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828963	72828963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	110	636	0	ENST00000268489.5:c.7618C>T	p.Pro2540Ser	p.P2540S	ENST00000268489	NM_006885.3	2540	Ccg/Tcg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830233	72830234	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	68	351	0	ENST00000268489.5:c.6347dup	p.Gln2117AlafsTer39	p.Q2117Afs*39	ENST00000268489	NM_006885.3	2116	ccg/ccCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993581	72993581	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	215	440	1	ENST00000268489.5:c.464del	p.Gly155AlafsTer17	p.G155Afs*17	ENST00000268489	NM_006885.3	155	gGc/gc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805947	89805947	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200215131		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	76	431	2	ENST00000389301.3:c.3949C>T	p.Arg1317Trp	p.R1317W	ENST00000389301	NM_000135.2	1317	Cgg/Tgg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217850	7217850	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	271	699	3	ENST00000380728.2:c.161del	p.Lys54ArgfsTer9	p.K54Rfs*9	ENST00000380728		54	aAg/ag																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217872	7217875	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	243	612	1	ENST00000380728.2:c.136_139del	p.Glu46AsnfsTer16	p.E46Nfs*16	ENST00000380728		46	GAAGaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	230	694	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
RARA	5914	MSKCC	GRCh37	17	38487532	38487532	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	89	492	0	ENST00000254066.5:c.62T>C	p.Val21Ala	p.V21A	ENST00000254066	NM_000964.3	21	gTg/gCg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40359707	40359707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	118	462	0	ENST00000293328.3:c.1946G>A	p.Arg649Lys	p.R649K	ENST00000293328	NM_012448.3	649	aGa/aAa																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40461469	40461469	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	212	774	0	ENST00000345506.4:c.2189G>C	p.Cys730Ser	p.C730S	ENST00000345506	NM_003152.3	730	tGc/tCc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	89	609	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58701096	58701096	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	103	505	0	ENST00000305921.3:c.687A>C	p.Glu229Asp	p.E229D	ENST00000305921	NM_003620.3	229	gaA/gaC																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59937249	59937249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	81	437	0	ENST00000259008.2:c.113G>A	p.Ser38Asn	p.S38N	ENST00000259008	NM_032043.2	38	aGc/aAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214637	5214637	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757423838		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	206	679	0	ENST00000357368.4:c.4429C>T	p.Arg1477Cys	p.R1477C	ENST00000357368	NM_002850.3	1477	Cgt/Tgt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222730	5222731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs766222935		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	96	514	2	ENST00000357368.4:c.3072dup	p.Val1025ArgfsTer34	p.V1025Rfs*34	ENST00000357368	NM_002850.3	1024	-/C																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135028	11135028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	224	564	0	ENST00000344626.4:c.2995G>A	p.Asp999Asn	p.D999N	ENST00000344626	NM_003072.3	999	Gac/Aac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218138	36218138	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	150	376	0	ENST00000222270.7:c.4085A>C	p.His1362Pro	p.H1362P	ENST00000222270	NM_014727.1	1362	cAc/cCc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753149	42753151	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs199960550		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	199	573	8	ENST00000222329.4:c.1113_1115del	p.Ser373del	p.S373del	ENST00000222329	NM_006494.2	371	tcTTCc/tcc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753644	42753644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759092904		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	249	693	1	ENST00000222329.4:c.620G>A	p.Arg207Gln	p.R207Q	ENST00000222329	NM_006494.2	207	cGa/cAa																																																																															
CIC	23152	MSKCC	GRCh37	19	42793116	42793117	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	114	729	0	ENST00000575354.2:c.1012dup	p.Ala338GlyfsTer69	p.A338Gfs*69	ENST00000575354	NM_015125.3	336	-/G																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902166	50902166	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	134	506	0	ENST00000440232.2:c.62del	p.Gly21AlafsTer20	p.G21Afs*20	ENST00000440232	NM_002691.3	20	Ggg/gg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918125	50918127	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs763850764		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	76	675	0	ENST00000440232.2:c.2446_2448del	p.Ser816del	p.S816del	ENST00000440232	NM_002691.3	814	ttCTCc/ttc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52719125	52719125	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771769470		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	107	504	2	ENST00000322088.6:c.901G>A	p.Ala301Thr	p.A301T	ENST00000322088	NM_014225.5	301	Gca/Aca																																																																															
SOS1	6654	MSKCC	GRCh37	2	39222492	39222492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	222	665	0	ENST00000402219.2:c.3118G>A	p.Val1040Ile	p.V1040I	ENST00000402219	NM_005633.3	1040	Gtt/Att																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919674	96919674	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140860906		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	151	475	0	ENST00000258439.3:c.589C>T	p.Arg197Cys	p.R197C	ENST00000258439	NM_001193304.2	197	Cgc/Tgc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095986	178095986	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201871588		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	145	468	0	ENST00000397062.3:c.1345C>T	p.Arg449Cys	p.R449C	ENST00000397062	NM_006164.4	449	Cgc/Tgc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178129297	178129297	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	86	415	0	ENST00000397062.3:c.8A>T	p.Asp3Val	p.D3V	ENST00000397062	NM_006164.4	3	gAc/gTc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	159	355	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	65	466	0	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445018	89445018	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	47	425	0	ENST00000336596.2:c.1338T>G	p.Asp446Glu	p.D446E	ENST00000336596	NM_005233.5	446	gaT/gaG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519936		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	221	338	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																																																															
KIT	3815	MSKCC	GRCh37	4	55564515	55564515	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754738766		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	133	420	0	ENST00000288135.5:c.403C>T	p.Arg135Cys	p.R135C	ENST00000288135	NM_000222.2	135	Cgc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540134	187540134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	99	409	0	ENST00000441802.2:c.7606G>A	p.Ala2536Thr	p.A2536T	ENST00000441802	NM_005245.3	2536	Gcc/Acc																																																																															
TERT	7015	MSKCC	GRCh37	5	1278901	1278901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772441504		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	174	545	3	ENST00000310581.5:c.2141C>T	p.Thr714Met	p.T714M	ENST00000310581	NM_198253.2	714	aCg/aTg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752795	57752795	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	124	345	0	ENST00000274289.3:c.1133A>G	p.Lys378Arg	p.K378R	ENST00000274289	NM_006622.3	378	aAa/aGa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066722	94066722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	214	497	1	ENST00000369303.4:c.1037C>T	p.Thr346Ile	p.T346I	ENST00000369303	NM_004440.3	346	aCa/aTa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528546	157528546	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	271	615	0	ENST00000346085.5:c.6271A>G	p.Ile2091Val	p.I2091V	ENST00000346085	NM_020732.3	2091	Atc/Gtc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6036958	6036958	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	178	411	0	ENST00000265849.7:c.802del	p.Tyr268ThrfsTer39	p.Y268Tfs*39	ENST00000265849	NM_000535.5	268	Tac/ac																																																																															
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	266	563	4	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845959	151845959	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	131	628	0	ENST00000262189.6:c.13053del	p.Lys4351AsnfsTer5	p.K4351Nfs*5	ENST00000262189	NM_170606.2	4351	aaA/aa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877811	151877812	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	157	293	0	ENST00000262189.6:c.7133_7134del	p.Thr2378ArgfsTer11	p.T2378Rfs*11	ENST00000262189	NM_170606.2	2378	aCA/a																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340356	8340356	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs553232071		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	160	414	0	ENST00000356435.5:c.5240G>A	p.Arg1747His	p.R1747H	ENST00000356435		1747	cGt/cAt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341261	8341261	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759691127		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	133	290	0	ENST00000356435.5:c.4955C>T	p.Ala1652Val	p.A1652V	ENST00000356435		1652	gCc/gTc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882049	36882050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs780753361		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	201	648	0	ENST00000358127.4:c.963dup	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	-/C																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	163	505	4	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249372	110249372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	372	911	5	ENST00000374672.4:c.1201G>A	p.Ala401Thr	p.A401T	ENST00000374672	NM_004235.4	401	Gcg/Acg																																																																															
ABL1	25	MSKCC	GRCh37	9	133730335	133730335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	211	464	0	ENST00000318560.5:c.401G>A	p.Arg134His	p.R134H	ENST00000318560	NM_005157.4	134	cGc/cAc																																																																															
ABL1	25	MSKCC	GRCh37	9	133759912	133759913	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	192	624	0	ENST00000318560.5:c.2236_2237del	p.Gln746ValfsTer2	p.Q746Vfs*2	ENST00000318560	NM_005157.4	745	agACag/agag																																																																															
ABL1	25	MSKCC	GRCh37	9	133760447	133760447	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771729224		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	169	541	1	ENST00000318560.5:c.2770G>A	p.Gly924Arg	p.G924R	ENST00000318560	NM_005157.4	924	Ggg/Agg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137293658	137293658	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	223	782	0	ENST00000481739.1:c.213del	p.Met72TrpfsTer27	p.M72Wfs*27	ENST00000481739	NM_002957.4	70	tCc/tc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923001	39923001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	237	313	0	ENST00000378444.4:c.3707A>G	p.Glu1236Gly	p.E1236G	ENST00000378444	NM_001123385.1	1236	gAa/gGa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161392	55161392	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767697835		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	117	421	0	ENST00000257290.5:c.3223G>A	p.Asp1075Asn	p.D1075N	ENST00000257290	NM_006206.4	1075	Gac/Aac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492897	56492898	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	98	297	0	ENST00000407977.2:c.41_42delinsG	p.Pro14ArgfsTer4	p.P14Rfs*4	ENST00000407977		14	cCC/cG																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112593	115112593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	73	681	0	ENST00000257566.3:c.1147G>A	p.Glu383Lys	p.E383K	ENST00000257566	NM_016569.3	383	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68772264	68772265	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	GTA			P-0032331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	233	691	0	ENST00000261769.5:c.115_116insAGT	p.Thr38_Phe39insTer	p.T38_F39ins*	ENST00000261769	NM_004360.3	38	acg/acGTAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916923	178916929	+	protein_altering_variant	In_Frame_Del	DEL	CCAGTAG	CCAGTAG	GTGT			P-0032331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	161	380	2	ENST00000263967.3:c.310_316delinsGTGT	p.Pro104_Gly106delinsValCys	p.P104_G106delinsVC	ENST00000263967	NM_006218.2	104	CCAGTAGgc/GTGTgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	26	763	0	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441261	52441261	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	20	466	0	ENST00000460680.1:c.509T>G	p.Phe170Cys	p.F170C	ENST00000460680	NM_004656.3	170	tTt/tGt																																																																															
KIT	3815	MSKCC	GRCh37	4	55564615	55564615	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs149092990		P-0033005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	22	558	0	ENST00000288135.5:c.503C>A	p.Ala168Glu	p.A168E	ENST00000288135	NM_000222.2	168	gCg/gAg																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481403	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0033005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	8	468	1	ENST00000288602.6:c.1405_1406delinsAT	p.Gly469Ile	p.G469I	ENST00000288602	NM_004333.4	469	GGa/ATa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	107	349	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266110	41266110	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	220	332	0	ENST00000349496.5:c.107A>C	p.His36Pro	p.H36P	ENST00000349496	NM_001904.3	36	cAt/cCt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717769	89717770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	83	325	0	ENST00000371953.3:c.800dup	p.Asp268GlyfsTer30	p.D268Gfs*30	ENST00000371953	NM_000314.4	265	cta/ctAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106336	27106337	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	216	685	0	ENST00000324856.7:c.5952_5953del	p.Ser1985GlnfsTer13	p.S1985Qfs*13	ENST00000324856	NM_006015.4	1983	TGt/t																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	120	423	3	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	136	469	0	ENST00000330684.3:c.4021A>G	p.Ser1341Gly	p.S1341G	ENST00000330684	NM_001134407.1	1341	Agc/Ggc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	173	570	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115780	8115780	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	191	489	1	ENST00000346208.3:c.1131del	p.Val378CysfsTer26	p.V378Cfs*26	ENST00000346208		376	Aaa/aa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs80357522		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	353	838	7	ENST00000357654.3:c.1961del	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539018	187539018	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374444088		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	216	583	0	ENST00000441802.2:c.8722G>A	p.Val2908Ile	p.V2908I	ENST00000441802	NM_005245.3	2908	Gtc/Atc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	174	458	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	212	536	10	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717663	89717663	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	190	529	0	ENST00000371953.3:c.688G>T	p.Gly230Ter	p.G230*	ENST00000371953	NM_000314.4	230	Gga/Tga																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944381	131944382	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs748536322		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	82	196	1	ENST00000265335.6:c.2801dup	p.Asn934LysfsTer10	p.N934Kfs*10	ENST00000265335		931	-/A																																																																															
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	188	487	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																															
EP300	2033	MSKCC	GRCh37	22	41489075	41489076	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	162	431	0	ENST00000263253.7:c.70_71del	p.Ser24GlyfsTer14	p.S24Gfs*14	ENST00000263253	NM_001429.3	23	CTc/c																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911172	29911172	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	71	352	0	ENST00000376809.5:c.471G>A	p.Trp157Ter	p.W157*	ENST00000376809	NM_002116.7	157	tgG/tgA																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	303	878	6	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37089123	37089125	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs1485223012		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	332	484	0	ENST00000231790.2:c.1852_1854del	p.Lys618del	p.K618del	ENST00000231790	NM_000249.3	615	ctGAAg/ctg																																																																															
RRAS	6237	MSKCC	GRCh37	19	50139079	50139079	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs925989732		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	245	650	1	ENST00000246792.3:c.484G>A	p.Ala162Thr	p.A162T	ENST00000246792	NM_006270.3	162	Gcc/Acc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998316	100998316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	31	85	0	ENST00000325455.5:c.1486C>T	p.Pro496Ser	p.P496S	ENST00000325455	NM_001202474.3	496	Ccc/Tcc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262438	16262438	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	104	362	1	ENST00000375759.3:c.9703A>G	p.Lys3235Glu	p.K3235E	ENST00000375759	NM_015001.2	3235	Aag/Gag																																																																															
POLE	5426	MSKCC	GRCh37	12	133241032	133241032	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs762395135		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	200	502	0	ENST00000320574.5:c.2485A>G	p.Met829Val	p.M829V	ENST00000320574	NM_006231.2	829	Atg/Gtg																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66777509	66777509	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	180	585	1	ENST00000307102.5:c.879del	p.Arg295GlyfsTer23	p.R295Gfs*23	ENST00000307102	NM_002755.3	292	aCc/ac																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7980315	7980316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	161	444	0	ENST00000319144.4:c.1267dup	p.Leu423ProfsTer26	p.L423Pfs*26	ENST00000319144	NM_001139.2	423	ctc/cCtc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372131	45372131	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	200	532	2	ENST00000262160.6:c.1038del	p.Phe346LeufsTer5	p.F346Lfs*5	ENST00000262160	NM_005901.5	346	ttT/tt																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128051628	128051628	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	205	647	0	ENST00000285398.2:c.28+2T>C		p.X10_splice	ENST00000285398	NM_000122.1	10																																																																																
HIST1H1C	3006	MSKCC	GRCh37	6	26056568	26056568	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	195	241	1	ENST00000343677.2:c.89del	p.Gly30ValfsTer33	p.G30Vfs*33	ENST00000343677	NM_005319.3	30	gGt/gt																																																																															
BRAF	673	MSKCC	GRCh37	7	140476781	140476781	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	196	587	0	ENST00000288602.6:c.1625A>G	p.His542Arg	p.H542R	ENST00000288602	NM_004333.4	542	cAt/cGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970950	21970951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs749588877		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	312	847	1	ENST00000304494.5:c.407dup	p.Thr137HisfsTer5	p.T137Hfs*5	ENST00000304494	NM_000077.4	136	ggc/ggGc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258440	16258440	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1440008576		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	162	556	0	ENST00000375759.3:c.5705G>A	p.Arg1902Gln	p.R1902Q	ENST00000375759	NM_015001.2	1902	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023769	27023769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	141	379	0	ENST00000324856.7:c.879del	p.Thr294ProfsTer69	p.T294Pfs*69	ENST00000324856	NM_006015.4	292	aCc/ac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023827	27023827	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	86	291	0	ENST00000324856.7:c.936del	p.Gly314AlafsTer49	p.G314Afs*49	ENST00000324856	NM_006015.4	311	taC/ta																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	69	554	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																															
CDC73	79577	MSKCC	GRCh37	1	193181550	193181550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	82	357	0	ENST00000367435.3:c.1097C>T	p.Ala366Val	p.A366V	ENST00000367435	NM_024529.4	366	gCa/gTa																																																																															
TET1	80312	MSKCC	GRCh37	10	70405964	70405964	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	42	644	0	ENST00000373644.4:c.3478A>G	p.Lys1160Glu	p.K1160E	ENST00000373644	NM_030625.2	1160	Aaa/Gaa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	142	443	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
WT1	7490	MSKCC	GRCh37	11	32456821	32456821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs992227366		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	174	586	1	ENST00000332351.3:c.71G>A	p.Cys24Tyr	p.C24Y	ENST00000332351	NM_024426.4	24	tGc/tAc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64126762	64126762	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	174	629	0	ENST00000334205.4:c.55G>T	p.Ala19Ser	p.A19S	ENST00000334205	NM_003942.2	19	Gcc/Tcc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200877	67200877	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	142	598	2	ENST00000312629.5:c.870del	p.Tyr291ThrfsTer14	p.Y291Tfs*14	ENST00000312629	NM_003952.2	289	Ccc/cc																																																																															
CCND1	595	MSKCC	GRCh37	11	69466019	69466019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	190	755	0	ENST00000227507.2:c.857C>T	p.Thr286Ile	p.T286I	ENST00000227507	NM_053056.2	286	aCa/aTa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71945372	71945372	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773625159		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	258	877	1	ENST00000298229.2:c.2260G>A	p.Glu754Lys	p.E754K	ENST00000298229	NM_001567.3	754	Gag/Aag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948548	71948548	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1349798484		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	221	775	0	ENST00000298229.2:c.3260G>A	p.Gly1087Asp	p.G1087D	ENST00000298229	NM_001567.3	1087	gGc/gAc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94219106	94219109	+	frameshift_variant	Frame_Shift_Del	DEL	TGAC	TGAC	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	97	335	0	ENST00000323929.3:c.295_298del	p.Val99ThrfsTer10	p.V99Tfs*10	ENST00000323929	NM_005591.3	99	GTCAac/ac																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195706	102195706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	115	425	0	ENST00000263464.3:c.466G>A	p.Ala156Thr	p.A156T	ENST00000263464	NM_001165.4	156	Gcc/Acc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344955	118344955	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	85	238	1	ENST00000534358.1:c.3086del	p.Lys1029ArgfsTer65	p.K1029Rfs*65	ENST00000534358	NM_005933.3	1027	ctA/ct																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	92	337	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416675	416676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	123	429	0	ENST00000399788.2:c.3874dup	p.Thr1292AsnfsTer2	p.T1292Nfs*2	ENST00000399788	NM_001042603.1	1292	act/aAct																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111886024	111886024	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201102821		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	33	569	0	ENST00000341259.2:c.1646G>A	p.Arg549Gln	p.R549Q	ENST00000341259	NM_005475.2	549	cGa/cAa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	194	671	9	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	207	734	2	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549116	21549116	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	151	591	0	ENST00000382592.4:c.3160C>T	p.Arg1054Ter	p.R1054*	ENST00000382592	NM_014572.2	1054	Cga/Tga																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103519181	103519181	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	116	369	0	ENST00000355739.4:c.2519T>G	p.Phe840Cys	p.F840C	ENST00000355739	NM_000123.3	840	tTt/tGt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435219	110435219	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746894027		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	158	491	1	ENST00000375856.3:c.3182C>T	p.Ser1061Leu	p.S1061L	ENST00000375856	NM_003749.2	1061	tCg/tTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438396	110438396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	31	38	0	ENST00000375856.3:c.5C>T	p.Ala2Val	p.A2V	ENST00000375856	NM_003749.2	2	gCg/gTg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	184	646	0	ENST00000349310.3:c.155T>G	p.Leu52Arg	p.L52R	ENST00000349310	NM_001014432.1	52	cTc/cGc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473707	67473707	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	178	588	0	ENST00000327367.4:c.787C>A	p.Pro263Thr	p.P263T	ENST00000327367	NM_005902.3	263	Ccc/Acc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99460051	99460051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	156	400	1	ENST00000268035.6:c.2147C>T	p.Ala716Val	p.A716V	ENST00000268035	NM_000875.3	716	gCt/gTt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347093	347093	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	271	944	3	ENST00000262320.3:c.1918del	p.Glu640LysfsTer65	p.E640Kfs*65	ENST00000262320	NM_003502.3	640	Gaa/aa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	252	926	5	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	131	384	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993581	72993581	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	146	558	1	ENST00000268489.5:c.464del	p.Gly155AlafsTer17	p.G155Afs*17	ENST00000268489	NM_006885.3	155	gGc/gc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15973703	15973703	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	193	504	0	ENST00000268712.3:c.4289T>C	p.Val1430Ala	p.V1430A	ENST00000268712	NM_006311.3	1430	gTa/gCa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131219	17131219	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	284	809	0	ENST00000285071.4:c.233del	p.Lys78SerfsTer52	p.K78Sfs*52	ENST00000285071	NM_144997.5	78	aAg/ag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883774	37883774	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	222	854	1	ENST00000269571.5:c.3391del	p.Leu1131Ter	p.L1131*	ENST00000269571		1129	gCc/gc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40485708	40485708	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs869312887		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	167	514	0	ENST00000264657.5:c.1032G>C	p.Gln344His	p.Q344H	ENST00000264657	NM_139276.2	344	caG/caC																																																																															
MSI2	124540	MSKCC	GRCh37	17	55752444	55752444	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1422545682		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	270	882	1	ENST00000284073.2:c.902C>T	p.Ala301Val	p.A301V	ENST00000284073	NM_138962.2	301	gCg/gTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438269	56438281	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGATGGCCCA	GGCTGATGGCCCA	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	320	677	0	ENST00000407977.2:c.712_724del	p.Trp238SerfsTer177	p.W238Sfs*177	ENST00000407977		238	TGGGCCATCAGCCag/ag																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56774157	56774157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	152	533	0	ENST00000337432.4:c.508G>A	p.Val170Ile	p.V170I	ENST00000337432	NM_058216.2	170	Gta/Ata																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	279	796	1	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs771001164		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	118	401	2	ENST00000307078.5:c.1214_1215del	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1297203260		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	162	465	1	ENST00000245479.2:c.916del	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374902	45374902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	153	591	0	ENST00000262160.6:c.941G>A	p.Gly314Asp	p.G314D	ENST00000262160	NM_005901.5	314	gGt/gAt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56411576	56411576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	101	306	0	ENST00000348428.3:c.1760C>T	p.Pro587Leu	p.P587L	ENST00000348428	NM_006785.3	587	cCa/cTa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619131	1619132	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	222	692	0	ENST00000344749.5:c.1428_1429del	p.Arg477AlafsTer35	p.R477Afs*35	ENST00000344749	NM_001136139.2	476	tcTCgg/tcgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231399	5231399	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs568688962		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	252	772	3	ENST00000357368.4:c.2077C>T	p.Arg693Cys	p.R693C	ENST00000357368	NM_002850.3	693	Cgc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15300082	15300082	+	splice_donor_variant	Splice_Site	SNP	A	A	G	rs112788166		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	188	619	0	ENST00000263388.2:c.1192+2T>C		p.X398_splice	ENST00000263388	NM_000435.2	398																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36211183	36211183	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	359	1086	4	ENST00000222270.7:c.939del	p.Val314Ter	p.V314*	ENST00000222270	NM_014727.1	312	Aaa/aa																																																																															
AKT2	208	MSKCC	GRCh37	19	40739829	40739829	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	298	835	0	ENST00000392038.2:c.1396C>A	p.Gln466Lys	p.Q466K	ENST00000392038	NM_001626.4	466	Cag/Aag																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	114	419	3	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
CIC	23152	MSKCC	GRCh37	19	42799299	42799300	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1158987717		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	62	363	1	ENST00000575354.2:c.4790dup	p.Pro1598ThrfsTer16	p.P1598Tfs*16	ENST00000575354	NM_015125.3	1595	tcc/tCcc																																																																															
RRAS	6237	MSKCC	GRCh37	19	50139882	50139882	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	228	807	0	ENST00000246792.3:c.447G>T	p.Gln149His	p.Q149H	ENST00000246792	NM_006270.3	149	caG/caT																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52719066	52719066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	153	568	0	ENST00000322088.6:c.842C>T	p.Thr281Ile	p.T281I	ENST00000322088	NM_014225.5	281	aCa/aTa																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605080	46605080	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	203	850	0	ENST00000263734.3:c.1301del	p.Pro434ArgfsTer9	p.P434Rfs*9	ENST00000263734	NM_001430.4	433	Ccc/cc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47705562	47705562	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	112	406	0	ENST00000233146.2:c.2362A>T	p.Thr788Ser	p.T788S	ENST00000233146	NM_000251.2	788	Act/Tct																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	262	531	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	179	450	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212570070	212570070	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745408040		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	132	483	0	ENST00000342788.4:c.1171G>A	p.Val391Ile	p.V391I	ENST00000342788	NM_005235.2	391	Gtc/Atc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662194	227662194	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	147	572	0	ENST00000305123.5:c.1261A>G	p.Ser421Gly	p.S421G	ENST00000305123	NM_005544.2	421	Agc/Ggc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	167	837	1	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	23	246	0	ENST00000375687.4:c.1933_1934dup	p.Gly646ValfsTer58	p.G646Vfs*58	ENST00000375687	NM_015338.5	642	-/GG																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100974	41100974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1259827929		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	154	582	0	ENST00000373198.4:c.1382G>A	p.Arg461Gln	p.R461Q	ENST00000373198	NM_133170.3	461	cGa/cAa																																																																															
EP300	2033	MSKCC	GRCh37	22	41574689	41574689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	261	870	2	ENST00000263253.7:c.6974C>A	p.Ser2325Tyr	p.S2325Y	ENST00000263253	NM_001429.3	2325	tCc/tAc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	122	430	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
TP63	8626	MSKCC	GRCh37	3	189455623	189455623	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	140	447	0	ENST00000264731.3:c.157G>T	p.Glu53Ter	p.E53*	ENST00000264731	NM_003722.4	53	Gag/Tag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55131182	55131182	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	33	583	0	ENST00000257290.5:c.725T>C	p.Val242Ala	p.V242A	ENST00000257290	NM_006206.4	242	gTg/gCg																																																																															
KIT	3815	MSKCC	GRCh37	4	55602911	55602911	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753419764		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	115	360	0	ENST00000288135.5:c.2621C>T	p.Pro874Leu	p.P874L	ENST00000288135	NM_000222.2	874	cCg/cTg																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84403315	84403315	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs770769937		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	27	331	0	ENST00000321945.7:c.170A>G	p.Tyr57Cys	p.Y57C	ENST00000321945	NM_139076.2	57	tAt/tGt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	213	537	2	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517818	187517819	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	31	363	0	ENST00000441802.2:c.12875_12876del	p.Val4292AlafsTer27	p.V4292Afs*27	ENST00000441802	NM_005245.3	4292	gTG/g																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	188	457	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112116506	112116506	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1257143633		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	70	261	0	ENST00000257430.4:c.551T>C	p.Met184Thr	p.M184T	ENST00000257430	NM_000038.5	184	aTg/aCg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638731	176638731	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151165525		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	221	671	0	ENST00000439151.2:c.3331G>A	p.Asp1111Asn	p.D1111N	ENST00000439151	NM_022455.4	1111	Gat/Aat																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553356	106553356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	127	406	0	ENST00000369096.4:c.1321C>T	p.Pro441Ser	p.P441S	ENST00000369096	NM_001198.3	441	Ccg/Tcg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	78	306	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341865	8341865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	113	644	0	ENST00000356435.5:c.4775G>T	p.Arg1592Met	p.R1592M	ENST00000356435		1592	aGg/aTg																																																																															
SYK	6850	MSKCC	GRCh37	9	93624493	93624493	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1276980680		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	80	298	0	ENST00000375746.1:c.584G>A	p.Arg195Gln	p.R195Q	ENST00000375746	NM_001174167.1	195	cGa/cAa																																																																															
RXRA	6256	MSKCC	GRCh37	9	137328378	137328380	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-	rs763369916		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	209	834	0	ENST00000481739.1:c.1315_1317del	p.Phe439del	p.F439del	ENST00000481739	NM_002957.4	436	cTCTtc/ctc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400303	139400303	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs553328686		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	207	716	0	ENST00000277541.6:c.4045G>A	p.Ala1349Thr	p.A1349T	ENST00000277541	NM_017617.3	1349	Gct/Act																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041265	47041265	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	238	857	0	ENST00000329236.7:c.1459C>T	p.Pro487Ser	p.P487S	ENST00000329236	NM_001204466.1	487	Cct/Tct																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	35	736	3	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
AR	367	MSKCC	GRCh37	X	66765155	66765155	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs868709351		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	11	343	0	ENST00000374690.3:c.167T>A	p.Leu56Gln	p.L56Q	ENST00000374690	NM_000044.3	56	cTg/cAg																																																																															
AR	367	MSKCC	GRCh37	X	66765475	66765475	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1234341494		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	186	830	0	ENST00000374690.3:c.487A>G	p.Thr163Ala	p.T163A	ENST00000374690	NM_000044.3	163	Acg/Gcg																																																																															
ATRX	546	MSKCC	GRCh37	X	76776354	76776354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	117	660	0	ENST00000373344.5:c.7112C>T	p.Ala2371Val	p.A2371V	ENST00000373344	NM_000489.3	2371	gCg/gTg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86659171	86659171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	14	226	0	ENST00000274376.6:c.1460G>A	p.Gly487Glu	p.G487E	ENST00000274376	NM_002890.2	487	gGa/gAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0036570-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	35	365	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577529	7577529	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036570-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			393	73	673	0	ENST00000269305.4:c.752T>A	p.Ile251Asn	p.I251N	ENST00000269305	NM_001126112.2	251	aTc/aAc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65304162	65304162	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367582687		P-0036570-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			312	29	559	0	ENST00000342505.4:c.2953G>A	p.Val985Ile	p.V985I	ENST00000342505	NM_002227.2	985	Gtt/Att																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64135626	64135626	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1187689165		P-0036570-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			468	90	784	0	ENST00000334205.4:c.1094C>T	p.Ser365Phe	p.S365F	ENST00000334205	NM_003942.2	365	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0037029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	387	675	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
MDM4	4194	MSKCC	GRCh37	1	204499930	204499930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	131	539	0	ENST00000367182.3:c.272C>T	p.Ser91Phe	p.S91F	ENST00000367182	NM_001278516.1	91	tCc/tTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16235839	16235839	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766201418		P-0037029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	50	591	0	ENST00000375759.3:c.905G>A	p.Ser302Asn	p.S302N	ENST00000375759	NM_015001.2	302	aGt/aAt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109833	115109833	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753103762		P-0037029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	132	393	0	ENST00000257566.3:c.2045C>T	p.Ala682Val	p.A682V	ENST00000257566	NM_016569.3	682	gCc/gTc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29004232	29004232	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763071731		P-0037029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	151	448	1	ENST00000282397.4:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000282397	NM_002019.4	354	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	11	524	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	15	312	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439926	56439927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	48	387	0	ENST00000407977.2:c.665dup	p.Cys222TrpfsTer37	p.C222Wfs*37	ENST00000407977		222	tgc/tgGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0037095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	148	722	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448564	89448564	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1184230536		P-0037095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	67	578	0	ENST00000336596.2:c.1528C>T	p.Arg510Ter	p.R510*	ENST00000336596	NM_005233.5	510	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174835	112174835	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	37	318	0	ENST00000257430.4:c.3544A>T	p.Lys1182Ter	p.K1182*	ENST00000257430	NM_000038.5	1182	Aaa/Taa																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115273146	115273146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	79	538	0	ENST00000438362.2:c.1312G>A	p.Glu438Lys	p.E438K	ENST00000438362	NM_001242891.1	438	Gag/Aag																																																																															
FLT3	2322	MSKCC	GRCh37	13	28578200	28578200	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs573326027		P-0037095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	192	523	0	ENST00000241453.7:c.2971G>A	p.Glu991Lys	p.E991K	ENST00000241453	NM_004119.2	991	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	48	524	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440713	56440713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779337229		P-0037098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	87	732	0	ENST00000407977.2:c.505G>A	p.Ala169Thr	p.A169T	ENST00000407977		169	Gct/Act																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38966777	38966780	+	frameshift_variant	Frame_Shift_Del	DEL	CTAA	CTAA	-			P-0037098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	18	272	0	ENST00000357387.3:c.1262_1265del	p.Val421GlufsTer6	p.V421Efs*6	ENST00000357387	NM_152756.3	421	gTTAGa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579410	7579410	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	68	773	0	ENST00000269305.4:c.277del	p.Leu93CysfsTer30	p.L93Cfs*30	ENST00000269305	NM_001126112.2	93	Ctg/tg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457309	67457309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	64	745	0	ENST00000327367.4:c.283C>A	p.Pro95Thr	p.P95T	ENST00000327367	NM_005902.3	95	Cca/Aca																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280081	66280081	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	38	433	0	ENST00000273854.3:c.1608T>A	p.Tyr536Ter	p.Y536*	ENST00000273854	NM_004439.5	536	taT/taA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	592	428	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0037111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	41	235	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0037111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	520	694	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593469	48593470	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTTTG			P-0037111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	191	393	0	ENST00000342988.3:c.1221_1225dup	p.Val409AlafsTer8	p.V409Afs*8	ENST00000342988	NM_005359.5	407	gtc/gtCTTTGc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267350	41267350	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0037111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	113	205	0	ENST00000349496.5:c.934A>C	p.Lys312Gln	p.K312Q	ENST00000349496	NM_001904.3	312	Aag/Cag																																																																															
APC	324	MSKCC	GRCh37	5	112162803	112162803	+	splice_acceptor_variant	Splice_Site	DEL	A	A	-			P-0037111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	51	318	0	ENST00000257430.4:c.1409-2del		p.X470_splice	ENST00000257430	NM_000038.5	470																																																																																
RNF43	54894	MSKCC	GRCh37	17	56437606	56437606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886926322		P-0037123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	168	414	0	ENST00000407977.2:c.856C>T	p.Arg286Trp	p.R286W	ENST00000407977		286	Cgg/Tgg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473719	67473719	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	290	606	0	ENST00000327367.4:c.799G>T	p.Glu267Ter	p.E267*	ENST00000327367	NM_005902.3	267	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578289	7578289	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0037123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	228	619	0	ENST00000269305.4:c.560del	p.Gly187ValfsTer60	p.G187Vfs*60	ENST00000269305	NM_001126112.2	187	gGt/gt																																																																															
ATM	472	MSKCC	GRCh37	11	108205820	108205820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	160	397	0	ENST00000278616.4:c.8135G>A	p.Arg2712Lys	p.R2712K	ENST00000278616	NM_000051.3	2712	aGg/aAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	309	555	2	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935634	13935634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	85	506	1	ENST00000405192.2:c.1222C>T	p.Arg408Cys	p.R408C	ENST00000405192	NM_001163147.1	408	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25368390	25368390	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	51	462	0	ENST00000256078.4:c.555del	p.Lys185AsnfsTer4	p.K185Nfs*4	ENST00000256078	NM_033360.2	185	aaA/aa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646981	23646981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs587776408		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	97	893	2	ENST00000261584.4:c.886del	p.Met296Ter	p.M296*	ENST00000261584	NM_024675.3	296	Atg/tg																																																																															
TP63	8626	MSKCC	GRCh37	3	189526061	189526061	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	154	375	0	ENST00000264731.3:c.325C>T	p.Pro109Ser	p.P109S	ENST00000264731	NM_003722.4	109	Cca/Tca																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	16	147	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148512041	148512041	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	38	406	0	ENST00000320356.2:c.1637A>T	p.Asn546Ile	p.N546I	ENST00000320356	NM_004456.4	546	aAt/aTt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029511	16029511	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	205	500	0	ENST00000268712.3:c.1519C>T	p.Arg507Ter	p.R507*	ENST00000268712	NM_006311.3	507	Cga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521544	8521544	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	162	420	0	ENST00000356435.5:c.694C>T	p.Arg232Cys	p.R232C	ENST00000356435		232	Cgc/Tgc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99193602	99193602	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1271977013		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	44	399	0	ENST00000074304.5:c.2797C>T	p.Arg933Cys	p.R933C	ENST00000074304	NM_001134224.1	933	Cgc/Tgc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8492897	8492897	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs544419494		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	99	620	0	ENST00000356435.5:c.2432G>A	p.Arg811His	p.R811H	ENST00000356435		811	cGc/cAc																																																																															
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	154	722	5	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	236	665	2	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444236	49444238	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	170	1002	1	ENST00000301067.7:c.3133_3135del	p.Pro1045del	p.P1045del	ENST00000301067	NM_003482.3	1045	CCT/-																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041262	29041262	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	36	523	0	ENST00000282397.4:c.166del	p.Glu56LysfsTer12	p.E56Kfs*12	ENST00000282397	NM_002019.4	56	Gaa/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	74	850	2	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2494665	2494665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779181014		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	112	701	0	ENST00000355716.4:c.805G>A	p.Val269Met	p.V269M	ENST00000355716	NM_003820.2	269	Gtg/Atg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937983	36937983	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	122	904	0	ENST00000361632.4:c.853del	p.Leu285SerfsTer43	p.L285Sfs*43	ENST00000361632		285	Ctc/tc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910259	50910259	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1043752384		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	210	682	1	ENST00000440232.2:c.1514G>A	p.Arg505His	p.R505H	ENST00000440232	NM_002691.3	505	cGc/cAc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864218	57864218	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	151	572	4	ENST00000228682.2:c.1700del	p.Pro567LeufsTer46	p.P567Lfs*46	ENST00000228682	NM_005269.2	565	ttC/tt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164655	36164655	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	89	766	0	ENST00000300305.3:c.1220A>G	p.Tyr407Cys	p.Y407C	ENST00000300305		407	tAc/tGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879229	151879229	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs763438739		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	200	588	0	ENST00000262189.6:c.5716C>T	p.Arg1906Ter	p.R1906*	ENST00000262189	NM_170606.2	1906	Cga/Tga																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1956968	1956968	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143360610		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	89	651	3	ENST00000382895.3:c.2419G>A	p.Ala807Thr	p.A807T	ENST00000382895	NM_133330.2	807	Gcc/Acc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5218452	5218452	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753143589		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	85	791	0	ENST00000357368.4:c.4027C>T	p.Arg1343Cys	p.R1343C	ENST00000357368	NM_002850.3	1343	Cgc/Tgc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004348	150004348	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766836005		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	176	579	0	ENST00000253339.5:c.1877G>A	p.Arg626Gln	p.R626Q	ENST00000253339		626	cGa/cAa																																																																															
BCL6	604	MSKCC	GRCh37	3	187444617	187444617	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs545063119		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	289	622	1	ENST00000232014.4:c.1610C>T	p.Thr537Met	p.T537M	ENST00000232014	NM_001130845.1	537	aCg/aTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629493	187629493	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	202	753	0	ENST00000441802.2:c.1489T>C	p.Tyr497His	p.Y497H	ENST00000441802	NM_005245.3	497	Tac/Cac																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43707981	43707981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	292	854	0	ENST00000382044.4:c.4900C>T	p.Arg1634Trp	p.R1634W	ENST00000382044	NM_001141980.1	1634	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023190	27023190	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	49	144	0	ENST00000324856.7:c.296A>G	p.Asp99Gly	p.D99G	ENST00000324856	NM_006015.4	99	gAc/gGc																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228613004	228613004	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375918041		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	160	427	0	ENST00000366696.1:c.23C>T	p.Ala8Val	p.A8V	ENST00000366696	NM_003493.2	8	gCg/gTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70404659	70404659	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	67	567	0	ENST00000373644.4:c.2173G>T	p.Asp725Tyr	p.D725Y	ENST00000373644	NM_030625.2	725	Gat/Tat																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137854	64137854	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs755881487		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	344	1069	1	ENST00000334205.4:c.1955G>A	p.Arg652Gln	p.R652Q	ENST00000334205	NM_003942.2	652	cGa/cAa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94163079	94163079	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	56	514	0	ENST00000323929.3:c.2068G>A	p.Glu690Lys	p.E690K	ENST00000323929	NM_005591.3	690	Gag/Aag																																																																															
CBL	867	MSKCC	GRCh37	11	119156155	119156155	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	39	620	0	ENST00000264033.4:c.1820A>T	p.Asp607Val	p.D607V	ENST00000264033	NM_005188.3	607	gAt/gTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427986	49427986	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	73	772	0	ENST00000301067.7:c.10604A>G	p.His3535Arg	p.H3535R	ENST00000301067	NM_003482.3	3535	cAc/cGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445668	49445668	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	117	1008	0	ENST00000301067.7:c.1798T>A	p.Phe600Ile	p.F600I	ENST00000301067	NM_003482.3	600	Ttc/Atc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864151	57864151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	219	581	0	ENST00000228682.2:c.1628G>A	p.Ser543Asn	p.S543N	ENST00000228682	NM_005269.2	543	aGc/aAc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864787	57864787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	61	663	0	ENST00000228682.2:c.2264C>A	p.Pro755His	p.P755H	ENST00000228682	NM_005269.2	755	cCt/cAt																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112888304	112888304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	145	494	0	ENST00000351677.2:c.320C>A	p.Pro107His	p.P107H	ENST00000351677	NM_002834.3	107	cCt/cAt																																																																															
RB1	5925	MSKCC	GRCh37	13	49050876	49050876	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	42	318	0	ENST00000267163.4:c.2560A>T	p.Asn854Tyr	p.N854Y	ENST00000267163	NM_000321.2	854	Aac/Tac																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724596	43724597	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	370	1051	0	ENST00000382044.4:c.3470_3471del	p.Ile1157ArgfsTer27	p.I1157Rfs*27	ENST00000382044	NM_001141980.1	1157	aTA/a																																																																															
CD276	80381	MSKCC	GRCh37	15	73994608	73994608	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	134	923	0	ENST00000318443.5:c.92T>C	p.Val31Ala	p.V31A	ENST00000318443	NM_001024736.1	31	gTc/gCc																																																																															
NF1	4763	MSKCC	GRCh37	17	29676143	29676143	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	42	345	0	ENST00000358273.4:c.7195A>G	p.Arg2399Gly	p.R2399G	ENST00000358273	NM_001042492.2	2399	Agg/Ggg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40485736	40485736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776115471		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	190	544	0	ENST00000264657.5:c.1004G>A	p.Arg335Gln	p.R335Q	ENST00000264657	NM_139276.2	335	cGg/cAg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18966793	18966793	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	94	784	0	ENST00000262803.5:c.1604A>G	p.His535Arg	p.H535R	ENST00000262803	NM_002911.3	535	cAc/cGc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30312916	30312916	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146040933		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	85	654	0	ENST00000262643.3:c.719G>A	p.Arg240His	p.R240H	ENST00000262643	NM_001238.2	240	cGt/cAt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89156917	89156917	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	91	631	0	ENST00000336596.2:c.19A>G	p.Ile7Val	p.I7V	ENST00000336596	NM_005233.5	7	Atc/Gtc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177024	56177024	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	168	511	0	ENST00000399503.3:c.2294T>C	p.Leu765Ser	p.L765S	ENST00000399503	NM_005921.1	765	tTg/tCg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671558	30671558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	77	775	0	ENST00000376406.3:c.5402del	p.Pro1801ArgfsTer15	p.P1801Rfs*15	ENST00000376406	NM_014641.2	1801	cCg/cg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405904	157405904	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	65	501	0	ENST00000346085.5:c.2146G>T	p.Ala716Ser	p.A716S	ENST00000346085	NM_020732.3	716	Gcg/Tcg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38189012	38189012	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	99	973	1	ENST00000317025.8:c.1002A>T	p.Lys334Asn	p.K334N	ENST00000317025	NM_023034.1	334	aaA/aaT																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956762	68956762	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	61	703	1	ENST00000288368.4:c.880T>C	p.Tyr294His	p.Y294H	ENST00000288368	NM_024870.2	294	Tac/Cac																																																																															
AGO2	27161	MSKCC	GRCh37	8	141569579	141569582	+	frameshift_variant	Frame_Shift_Del	DEL	ACAA	ACAA	-			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	215	623	0	ENST00000220592.5:c.702_705del	p.Cys235LysfsTer15	p.C235Kfs*15	ENST00000220592	NM_012154.3	234	gtTTGT/gt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738400	145738400	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781636798		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	90	807	0	ENST00000428558.2:c.2585C>T	p.Ser862Leu	p.S862L	ENST00000428558	NM_004260.3	862	tCg/tTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8524963	8524963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	43	346	1	ENST00000356435.5:c.641G>A	p.Gly214Asp	p.G214D	ENST00000356435		214	gGc/gAc																																																																															
FANCC	2176	MSKCC	GRCh37	9	97912266	97912266	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373270404		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	154	444	1	ENST00000289081.3:c.625C>T	p.Arg209Cys	p.R209C	ENST00000289081	NM_000136.2	209	Cgt/Tgt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932791	39932791	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	356	494	0	ENST00000378444.4:c.1808C>G	p.Ala603Gly	p.A603G	ENST00000378444	NM_001123385.1	603	gCc/gGc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643261	38643261	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	33	516	0	ENST00000299084.4:c.731A>C	p.Glu244Ala	p.E244A	ENST00000299084	NM_152594.2	244	gAg/gCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0037179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	32	516	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982992	201982992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	13	660	0	ENST00000359651.3:c.841G>A	p.Asp281Asn	p.D281N	ENST00000359651		281	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0037194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	163	575	3	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0037194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	58	529	1	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
AXL	558	MSKCC	GRCh37	19	41743930	41743930	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141302305		P-0037194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	221	732	0	ENST00000301178.4:c.865G>A	p.Val289Met	p.V289M	ENST00000301178	NM_021913.4	289	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0037194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	90	463	2	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	155	489	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112174241	112174241	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	53	410	1	ENST00000257430.4:c.2950G>T	p.Glu984Ter	p.E984*	ENST00000257430	NM_000038.5	984	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175657	112175657	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	51	347	0	ENST00000257430.4:c.4366A>T	p.Lys1456Ter	p.K1456*	ENST00000257430	NM_000038.5	1456	Aaa/Taa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138137	64138137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	260	630	0	ENST00000334205.4:c.2060C>T	p.Thr687Met	p.T687M	ENST00000334205	NM_003942.2	687	aCg/aTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157488275	157488275	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377351099		P-0037194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	124	449	1	ENST00000346085.5:c.2981C>T	p.Ala994Val	p.A994V	ENST00000346085	NM_020732.3	994	gCg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132863	152132865	+	inframe_deletion	In_Frame_Del	DEL	CGA	CGA	-			P-0037194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	136	415	0	ENST00000262189.6:c.7_9del	p.Ser3del	p.S3del	ENST00000262189	NM_170606.2	3	TCG/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0037195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	533	790	6	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																															
APC	324	MSKCC	GRCh37	5	112173429	112173429	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	164	419	0	ENST00000257430.4:c.2138C>A	p.Ser713Ter	p.S713*	ENST00000257430	NM_000038.5	713	tCa/tAa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982395	201982395	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	172	771	0	ENST00000359651.3:c.774G>A	p.Trp258Ter	p.W258*	ENST00000359651		258	tgG/tgA																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133603	55133603	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	97	561	1	ENST00000257290.5:c.907A>C	p.Lys303Gln	p.K303Q	ENST00000257290	NM_006206.4	303	Aag/Cag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0037242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	164	636	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
RB1	5925	MSKCC	GRCh37	13	48878115	48878117	+	inframe_deletion	In_Frame_Del	DEL	CCG	CCG	-	rs760927237		P-0037242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	11	89	0	ENST00000267163.4:c.78_80del	p.Pro29del	p.P29del	ENST00000267163	NM_000321.2	23	CCG/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578217	7578218	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0037242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	353	555	0	ENST00000269305.4:c.631_632del	p.Thr211PhefsTer4	p.T211Ffs*4	ENST00000269305	NM_001126112.2	211	ACt/t																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400909	72400909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	72	424	0	ENST00000357731.5:c.262G>T	p.Asp88Tyr	p.D88Y	ENST00000357731	NM_173808.2	88	Gat/Tat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575696	48575696	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0037242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	72	562	0	ENST00000342988.3:c.454+2T>C		p.X152_splice	ENST00000342988	NM_005359.5	152																																																																																
APC	324	MSKCC	GRCh37	5	112175511	112175511	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	195	369	0	ENST00000257430.4:c.4220del	p.Ser1407MetfsTer8	p.S1407Mfs*8	ENST00000257430	NM_000038.5	1407	aGt/at																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170270	32170270	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187627302		P-0037242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	183	631	2	ENST00000375023.3:c.3338G>A	p.Arg1113His	p.R1113H	ENST00000375023	NM_004557.3	1113	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	42	503	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	71	388	0	ENST00000263967.3:c.3132T>A	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaA																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114224	115114225	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	309	721	0	ENST00000257566.3:c.992dup	p.Glu332GlyfsTer6	p.E332Gfs*6	ENST00000257566	NM_016569.3	331	aag/aaAg																																																																															
CDH1	999	MSKCC	GRCh37	16	68842676	68842677	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	245	671	0	ENST00000261769.5:c.615dup	p.Ile206TyrfsTer3	p.I206Yfs*3	ENST00000261769	NM_004360.3	204	-/T																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206763	36206764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGGGTTGGGCGT			P-0037264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	170	576	0	ENST00000300305.3:c.736_748dup	p.Arg250HisfsTer15	p.R250Hfs*15	ENST00000300305		250	cgt/cACGCCCAACCCTCgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0037286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	129	426	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0037298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	302	866	0	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	84	372	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0037377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	76	279	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44520605	44520605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	61	193	0	ENST00000291552.4:c.157C>T	p.Arg53Cys	p.R53C	ENST00000291552	NM_006758.2	53	Cgt/Tgt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910331	29910331	+	start_lost	Translation_Start_Site	SNP	A	A	T			P-0037377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	75	435	0	ENST00000376809.5:c.1A>T	p.Met1?	p.M1?	ENST00000376809	NM_002116.7	1	Atg/Ttg																																																																															
APC	324	MSKCC	GRCh37	5	112174236	112174236	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	190	263	0	ENST00000257430.4:c.2945C>A	p.Ser982Ter	p.S982*	ENST00000257430	NM_000038.5	982	tCg/tAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114901076	114901076	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1247712690		P-0037377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	75	299	0	ENST00000543371.1:c.685+1G>A		p.X229_splice	ENST00000543371	NM_001198531.1	229																																																																																
WT1	7490	MSKCC	GRCh37	11	32456321	32456321	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756501972		P-0037377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	189	447	0	ENST00000332351.3:c.571G>A	p.Gly191Ser	p.G191S	ENST00000332351	NM_024426.4	191	Ggc/Agc																																																																															
MET	4233	MSKCC	GRCh37	7	116418947	116418947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	73	302	0	ENST00000397752.3:c.3458C>T	p.Pro1153Leu	p.P1153L	ENST00000397752	NM_000245.2	1153	cCg/cTg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625186	69625186	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs547457011		P-0037421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	122	746	0	ENST00000334134.2:c.607G>A	p.Gly203Ser	p.G203S	ENST00000334134	NM_005247.2	203	Ggt/Agt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448690	49448690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	75	406	1	ENST00000301067.7:c.169G>A	p.Asp57Asn	p.D57N	ENST00000301067	NM_003482.3	57	Gac/Aac																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618688	37618688	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	301	423	0	ENST00000447079.4:c.365del	p.Leu122TyrfsTer2	p.L122Yfs*2	ENST00000447079	NM_015083.1	122	Tta/ta																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032042	26032042	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	85	355	0	ENST00000244661.2:c.247C>G	p.Leu83Val	p.L83V	ENST00000244661	NM_003537.3	83	Ctt/Gtt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900649	32900650	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0037423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	29	519	0	ENST00000380152.3:c.530_531insGA	p.His179AsnfsTer7	p.H179Nfs*7	ENST00000380152		177	cca/ccGAa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467810	50467810	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs765032404		P-0037423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	42	460	0	ENST00000331340.3:c.1045C>A	p.Gln349Lys	p.Q349K	ENST00000331340	NM_006060.4	349	Cag/Aag																																																																															
AKT1	207	MSKCC	GRCh37	14	105243045	105243045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1733	364	940	0	ENST00000349310.3:c.238T>C	p.Trp80Arg	p.W80R	ENST00000349310	NM_001014432.1	80	Tgg/Cgg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061312	38061312	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1329067081		P-0037427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1640	238	780	0	ENST00000250448.2:c.677A>G	p.Asp226Gly	p.D226G	ENST00000250448	NM_004496.3	226	gAc/gGc																																																																															
RB1	5925	MSKCC	GRCh37	13	49039225	49039225	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	15	508	0	ENST00000267163.4:c.2303T>C	p.Ile768Thr	p.I768T	ENST00000267163	NM_000321.2	768	aTt/aCt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061164	38061193	+	inframe_deletion	In_Frame_Del	DEL	GCCGGCCCCCGGCTGCTTCTCGCACTTGAA	GCCGGCCCCCGGCTGCTTCTCGCACTTGAA	-			P-0037427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	75	322	0	ENST00000250448.2:c.796_825del	p.Phe266_Gly275del	p.F266_G275del	ENST00000250448	NM_004496.3	266	TTCAAGTGCGAGAAGCAGCCGGGGGCCGGC/-																																																																															
EP300	2033	MSKCC	GRCh37	22	41574517	41574517	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1258	125	751	0	ENST00000263253.7:c.6802C>T	p.Gln2268Ter	p.Q2268*	ENST00000263253	NM_001429.3	2268	Cag/Tag																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752356	57752356	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	88	420	0	ENST00000274289.3:c.1217C>A	p.Ser406Ter	p.S406*	ENST00000274289	NM_006622.3	406	tCa/tAa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70982043	70982043	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1278278618		P-0037450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	49	648	3	ENST00000276594.2:c.53C>T	p.Pro18Leu	p.P18L	ENST00000276594	NM_024504.3	18	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579406	7579406	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0037511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	545	551	0	ENST00000269305.4:c.281C>G	p.Ser94Ter	p.S94*	ENST00000269305	NM_001126112.2	94	tCa/tGa																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664910	138664910	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	89	118	0	ENST00000330315.3:c.655C>G	p.Gln219Glu	p.Q219E	ENST00000330315	NM_023067.3	219	Cag/Gag																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851423	156851423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2090	391	532	0	ENST00000524377.1:c.2380G>A	p.Val794Ile	p.V794I	ENST00000524377	NM_002529.3	794	Gtc/Atc																																																																															
RB1	5925	MSKCC	GRCh37	13	48939101	48939179	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCAGAGGTAATCTGAAAGGAAATTTAATAAAATATTAATGTTTTGAGACTGTGGAGGGAGGATAATTGTCTAACTTTC	TCCAGAGGTAATCTGAAAGGAAATTTAATAAAATATTAATGTTTTGAGACTGTGGAGGGAGGATAATTGTCTAACTTTC	-			P-0037511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	27	230	0	ENST00000267163.4:c.934_939+73del		p.X312_splice	ENST00000267163	NM_000321.2	312																																																																																
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0037581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	96	676	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	56	379	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133225552	133225552	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs535074635		P-0037613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	72	449	0	ENST00000320574.5:c.4112G>A	p.Arg1371Gln	p.R1371Q	ENST00000320574	NM_006231.2	1371	cGa/cAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099070	27099070	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	35	382	0	ENST00000324856.7:c.3486del	p.Pro1163GlnfsTer17	p.P1163Qfs*17	ENST00000324856	NM_006015.4	1162	ccA/cc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604661	48604663	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0037613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	21	267	0	ENST00000342988.3:c.1484_1486del	p.Leu495del	p.L495del	ENST00000342988	NM_005359.5	495	CTT/-																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839732	27839732	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1452025102		P-0037613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	29	379	2	ENST00000328488.2:c.362T>C	p.Met121Thr	p.M121T	ENST00000328488	NM_003533.2	121	aTg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780068		P-0037637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	148	813	1	ENST00000269305.4:c.472C>T	p.Arg158Cys	p.R158C	ENST00000269305	NM_001126112.2	158	Cgc/Tgc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3824659	3824659	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775229806		P-0037637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	69	642	1	ENST00000262367.5:c.2194G>A	p.Val732Ile	p.V732I	ENST00000262367	NM_004380.2	732	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578447	+	frameshift_variant	Frame_Shift_Del	DEL	GCTTGTAGATG	GCTTGTAGATG	-			P-0037637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	135	767	0	ENST00000269305.4:c.483_493del	p.Ile162ValfsTer15	p.I162Vfs*15	ENST00000269305	NM_001126112.2	161	gcCATCTACAAGCag/gcag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448433	49448433	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1301033353		P-0037637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	114	658	0	ENST00000301067.7:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000301067	NM_003482.3	93	cGg/cAg																																																																															
AXL	558	MSKCC	GRCh37	19	41748907	41748907	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	46	559	0	ENST00000301178.4:c.1432G>T	p.Glu478Ter	p.E478*	ENST00000301178	NM_021913.4	478	Gag/Tag																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750473	41750473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	29	638	0	ENST00000226382.2:c.155G>A	p.Gly52Glu	p.G52E	ENST00000226382	NM_003924.3	52	gGg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	105	143	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578499	7578499	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs786203071		P-0037682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	139	581	0	ENST00000269305.4:c.431A>C	p.Gln144Pro	p.Q144P	ENST00000269305	NM_001126112.2	144	cAg/cCg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107749	30107749	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760459161		P-0037682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	65	399	0	ENST00000331968.5:c.931C>T	p.Arg311Cys	p.R311C	ENST00000331968	NM_002742.2	311	Cgt/Tgt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913579	32913579	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1135401904		P-0037682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	191	253	0	ENST00000380152.3:c.5087G>T	p.Gly1696Val	p.G1696V	ENST00000380152		1696	gGa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0037701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	222	721	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521487	8521487	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758577045		P-0037701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	219	675	0	ENST00000356435.5:c.751G>A	p.Gly251Arg	p.G251R	ENST00000356435		251	Gga/Aga																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40371842	40371842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	236	936	0	ENST00000293328.3:c.569C>T	p.Ala190Val	p.A190V	ENST00000293328	NM_012448.3	190	gCc/gTc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688815	47688815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	144	408	0	ENST00000347630.2:c.485G>A	p.Ser162Asn	p.S162N	ENST00000347630	NM_001007230.1	162	aGt/aAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0037744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	240	745	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	54	245	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0037744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	140	449	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245380	153245380	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	165	594	0	ENST00000281708.4:c.1811A>C	p.Lys604Thr	p.K604T	ENST00000281708	NM_033632.3	604	aAa/aCa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251901	153251901	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	118	416	0	ENST00000281708.4:c.1105G>T	p.Glu369Ter	p.E369*	ENST00000281708	NM_033632.3	369	Gaa/Taa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978444	2978444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	200	695	0	ENST00000396946.4:c.886G>A	p.Asp296Asn	p.D296N	ENST00000396946	NM_032415.4	296	Gac/Aac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	105	561	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485837	57485837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	118	519	0	ENST00000371085.3:c.1138C>T	p.Arg380Cys	p.R380C	ENST00000371085	NM_000516.4	380	Cgt/Tgt																																																																															
CDH1	999	MSKCC	GRCh37	16	68855903	68855903	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0037748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	77	420	0	ENST00000261769.5:c.1712-1G>A		p.X571_splice	ENST00000261769	NM_004360.3	571																																																																																
DOT1L	84444	MSKCC	GRCh37	19	2185853	2185853	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0037748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	65	701	0	ENST00000398665.3:c.126-1G>C		p.X42_splice	ENST00000398665	NM_032482.2	42																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38061220	38061225	+	inframe_deletion	In_Frame_Del	DEL	CGTTCT	CGTTCT	-			P-0037801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	282	557	0	ENST00000250448.2:c.764_769del	p.Glu255_Asn256del	p.E255_N256del	ENST00000250448	NM_004496.3	255	gAGAACGgc/ggc																																																																															
POLE	5426	MSKCC	GRCh37	12	133244949	133244949	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	544	776	0	ENST00000320574.5:c.2166G>T	p.Arg722Ser	p.R722S	ENST00000320574	NM_006231.2	722	agG/agT																																																																															
UPF1	5976	MSKCC	GRCh37	19	18966754	18966754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	313	903	0	ENST00000262803.5:c.1565C>T	p.Pro522Leu	p.P522L	ENST00000262803	NM_002911.3	522	cCg/cTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262362	16262362	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	122	390	0	ENST00000375759.3:c.9627G>T	p.Gln3209His	p.Q3209H	ENST00000375759	NM_015001.2	3209	caG/caT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057790	27057790	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	195	917	0	ENST00000324856.7:c.1498T>G	p.Tyr500Asp	p.Y500D	ENST00000324856	NM_006015.4	500	Tat/Gat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106704	27106707	+	frameshift_variant	Frame_Shift_Del	DEL	CCTG	CCTG	-			P-0037801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	243	658	0	ENST00000324856.7:c.6315_6318del	p.Leu2106AlafsTer28	p.L2106Afs*28	ENST00000324856	NM_006015.4	2105	acCCTG/ac																																																																															
GNA11	2767	MSKCC	GRCh37	19	3113328	3113336	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GCCAATGCG	GCCAATGCG	TC			P-0037801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	297	615	2	ENST00000078429.4:c.322_330delinsTC	p.Ala108SerfsTer3	p.A108Sfs*3	ENST00000078429	NM_002067.2	108	GCCAATGCG/TC																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522214	157522214	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	234	743	0	ENST00000346085.5:c.4486A>C	p.Thr1496Pro	p.T1496P	ENST00000346085	NM_020732.3	1496	Aca/Cca																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0037811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	1148	710	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
MED12	9968	MSKCC	GRCh37	X	70357715	70357715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	89	381	0	ENST00000374080.3:c.5966G>A	p.Arg1989His	p.R1989H	ENST00000374080		1989	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175645	112175645	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	18	322	0	ENST00000257430.4:c.4354del	p.Val1452TyrfsTer21	p.V1452Yfs*21	ENST00000257430	NM_000038.5	1452	Gta/ta																																																																															
MET	4233	MSKCC	GRCh37	7	116340270	116340270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749738523		P-0037811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	54	231	0	ENST00000397752.3:c.1132G>A	p.Val378Ile	p.V378I	ENST00000397752	NM_000245.2	378	Gtc/Atc																																																																															
MITF	4286	MSKCC	GRCh37	3	69928446	69928446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	117	596	0	ENST00000352241.4:c.266G>A	p.Arg89Lys	p.R89K	ENST00000352241	NM_198159.2	89	aGa/aAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	115	290	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0038014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	282	598	4	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0038014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	105	309	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578179	7578179	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0038014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	205	511	0	ENST00000269305.4:c.670G>T	p.Glu224Ter	p.E224*	ENST00000269305	NM_001126112.2	224	Gag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	94	283	0	ENST00000342988.3:c.1610A>C	p.Asp537Ala	p.D537A	ENST00000342988	NM_005359.5	537	gAc/gCc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004721	150004721	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1034620976		P-0038014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	114	434	0	ENST00000253339.5:c.1504C>T	p.Arg502Cys	p.R502C	ENST00000253339		502	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175036	112175037	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	50	164	0	ENST00000257430.4:c.3746dup	p.Cys1249TrpfsTer7	p.C1249Wfs*7	ENST00000257430	NM_000038.5	1249	tgc/tGgc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11193154	11193154	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1471906651		P-0038014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	175	443	0	ENST00000361445.4:c.5347G>A	p.Asp1783Asn	p.D1783N	ENST00000361445	NM_004958.3	1783	Gac/Aac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114799817	114799817	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	143	407	0	ENST00000543371.1:c.484C>T	p.Gln162Ter	p.Q162*	ENST00000543371	NM_001198531.1	162	Cag/Tag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231290	46231290	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	104	255	0	ENST00000334344.6:c.1133del	p.Leu378TrpfsTer13	p.L378Wfs*13	ENST00000334344	NM_152641.2	377	aTt/at																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2213553	2213553	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	191	615	0	ENST00000398665.3:c.1573C>G	p.Leu525Val	p.L525V	ENST00000398665	NM_032482.2	525	Ctc/Gtc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344204	118344204	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	48	566	0	ENST00000534358.1:c.2330C>G	p.Ser777Cys	p.S777C	ENST00000534358	NM_005933.3	777	tCt/tGt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230533	46230533	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	27	414	0	ENST00000334344.6:c.782C>G	p.Ser261Ter	p.S261*	ENST00000334344	NM_152641.2	261	tCa/tGa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243951	46243951	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	54	466	0	ENST00000334344.6:c.2045C>G	p.Ser682Ter	p.S682*	ENST00000334344	NM_152641.2	682	tCa/tGa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2135315	2135315	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	55	626	0	ENST00000219476.3:c.4654G>C	p.Glu1552Gln	p.E1552Q	ENST00000219476	NM_000548.3	1552	Gaa/Caa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610210	10610210	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	291	821	0	ENST00000171111.5:c.500T>A	p.Val167Asp	p.V167D	ENST00000171111	NM_203500.1	167	gTt/gAt																																																																															
KIT	3815	MSKCC	GRCh37	4	55597566	55597566	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	99	445	0	ENST00000288135.5:c.2214A>C	p.Lys738Asn	p.K738N	ENST00000288135	NM_000222.2	738	aaA/aaC																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180603	56180603	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1269929971		P-0038256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	70	400	0	ENST00000399503.3:c.3932G>A	p.Gly1311Glu	p.G1311E	ENST00000399503	NM_005921.1	1311	gGa/gAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	153	313	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs483352695		P-0038793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	152	482	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																															
SRC	6714	MSKCC	GRCh37	20	36031750	36031750	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs879255268		P-0038793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	161	511	1	ENST00000358208.4:c.1579G>A	p.Glu527Lys	p.E527K	ENST00000358208		527	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971175	21971182	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCGCCA	CTCCGCCA	-			P-0038793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	134	242	0	ENST00000304494.5:c.176_183del	p.Val59AlafsTer58	p.V59Afs*58	ENST00000304494	NM_000077.4	59	gTGGCGGAG/g																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	143	215	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs121913468		P-0038803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	1474	442	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129378	2129378	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368095502		P-0038803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	345	597	0	ENST00000219476.3:c.3233G>A	p.Arg1078Gln	p.R1078Q	ENST00000219476	NM_000548.3	1078	cGg/cAg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923594	39923594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	29	255	0	ENST00000378444.4:c.3497C>T	p.Ser1166Phe	p.S1166F	ENST00000378444	NM_001123385.1	1166	tCt/tTt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739873	41739873	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1261664857		P-0038803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	210	421	0	ENST00000242208.4:c.100G>A	p.Asp34Asn	p.D34N	ENST00000242208	NM_002192.2	34	Gac/Aac																																																																															
FLT3	2322	MSKCC	GRCh37	13	28602358	28602358	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1958	151	388	0	ENST00000241453.7:c.2010C>G	p.Ser670Arg	p.S670R	ENST00000241453	NM_004119.2	670	agC/agG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578463	7578464	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGTG			P-0038803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	908	720	0	ENST00000269305.4:c.462_466dup	p.Arg156ProfsTer16	p.R156Pfs*16	ENST00000269305	NM_001126112.2	156	cgc/cCACCCgc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412529	63412530	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0038803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	551	281	0	ENST00000330258.3:c.637_638insGG	p.Gln213ArgfsTer70	p.Q213Rfs*70	ENST00000330258	NM_152424.3	213	cag/cGGag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934874		P-0038881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	253	836	0	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112170747	112170747	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	119	513	0	ENST00000257430.4:c.1847del	p.Leu616TrpfsTer14	p.L616Wfs*14	ENST00000257430	NM_000038.5	615	Ttt/tt																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202232	138202232	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs561168863		P-0038881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	111	548	0	ENST00000237289.4:c.2149G>A	p.Ala717Thr	p.A717T	ENST00000237289	NM_001270507.1	717	Gcc/Acc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662382	227662382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	168	661	0	ENST00000305123.5:c.1073G>A	p.Arg358Gln	p.R358Q	ENST00000305123	NM_005544.2	358	cGg/cAg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29115452	29115452	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759734429		P-0038881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	45	327	0	ENST00000328354.6:c.614C>T	p.Thr205Ile	p.T205I	ENST00000328354	NM_007194.3	205	aCt/aTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187516878	187516878	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	22	484	0	ENST00000441802.2:c.13103T>G	p.Leu4368Arg	p.L4368R	ENST00000441802	NM_005245.3	4368	cTg/cGg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187516883	187516883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	21	493	0	ENST00000441802.2:c.13098G>T	p.Gln4366His	p.Q4366H	ENST00000441802	NM_005245.3	4366	caG/caT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0039408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	360	355	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0039408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	350	687	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242475	55242475	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057520037		P-0039408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	78	363	0	ENST00000275493.2:c.2245G>C	p.Glu749Gln	p.E749Q	ENST00000275493	NM_005228.3	749	Gaa/Caa																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4123815	4123815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	230	423	0	ENST00000262948.5:c.58G>A	p.Glu20Lys	p.E20K	ENST00000262948	NM_030662.3	20	Gag/Aag																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518640	69518640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	88	563	0	ENST00000294312.3:c.5G>A	p.Arg2Gln	p.R2Q	ENST00000294312	NM_005117.2	2	cGg/cAg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0039432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	36	474	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	74	632	2	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028657	12028657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	27	406	0	ENST00000353533.5:c.860G>A	p.Arg287His	p.R287H	ENST00000353533	NM_003010.3	287	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0039601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	63	401	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
KIT	3815	MSKCC	GRCh37	4	55564515	55564515	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754738766		P-0039601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	108	492	1	ENST00000288135.5:c.403C>T	p.Arg135Cys	p.R135C	ENST00000288135	NM_000222.2	135	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378558	25378558	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1135401776		P-0039601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	74	369	1	ENST00000256078.4:c.440A>G	p.Lys147Arg	p.K147R	ENST00000256078	NM_033360.2	147	aAg/aGg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226102	2226102	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	197	804	3	ENST00000326181.6:c.1799G>C	p.Gly600Ala	p.G600A	ENST00000326181	NM_032271.2	600	gGc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578196	7578196	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	284	605	0	ENST00000269305.4:c.653T>A	p.Val218Glu	p.V218E	ENST00000269305	NM_001126112.2	218	gTg/gAg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984705	11984705	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0039751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	65	198	0	ENST00000353533.5:c.251C>G	p.Ser84Ter	p.S84*	ENST00000353533	NM_003010.3	84	tCa/tGa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	104	392	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CD274	29126	MSKCC	GRCh37	9	5465595	5465595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148141792		P-0039775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	113	229	0	ENST00000381577.3:c.779G>A	p.Arg260His	p.R260H	ENST00000381577	NM_014143.3	260	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs587782289		P-0039775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	216	611	0	ENST00000269305.4:c.706T>A	p.Tyr236Asn	p.Y236N	ENST00000269305	NM_001126112.2	236	Tac/Aac																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220023	5220023	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1690	255	791	1	ENST00000357368.4:c.3692T>A	p.Phe1231Tyr	p.F1231Y	ENST00000357368	NM_002850.3	1231	tTc/tAc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870813	12870814	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0039802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	132	358	0	ENST00000228872.4:c.41_42del	p.Glu14AlafsTer110	p.E14Afs*110	ENST00000228872	NM_004064.3	14	GAg/g																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878278	151878279	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	117	952	0	ENST00000262189.6:c.6666dup	p.Ala2223SerfsTer13	p.A2223Sfs*13	ENST00000262189	NM_170606.2	2222	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0039889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	432	623	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380254	25380254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	148	571	0	ENST00000256078.4:c.204G>T	p.Arg68Ser	p.R68S	ENST00000256078	NM_033360.2	68	agG/agT																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271975	15271975	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs567953412		P-0039889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	256	836	0	ENST00000263388.2:c.6464G>A	p.Gly2155Glu	p.G2155E	ENST00000263388	NM_000435.2	2155	gGa/gAa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450292	50450292	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs374333820		P-0039889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	192	646	0	ENST00000331340.3:c.476A>G	p.Asn159Ser	p.N159S	ENST00000331340	NM_006060.4	159	aAc/aGc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724581	162724581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	98	613	0	ENST00000367921.3:c.353A>G	p.Tyr118Cys	p.Y118C	ENST00000367921	NM_006182.2	118	tAc/tGc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200485	67200486	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	553	793	0	ENST00000312629.5:c.680dup	p.His227GlnfsTer8	p.H227Qfs*8	ENST00000312629	NM_003952.2	227	cac/cAac																																																																															
DICER1	23405	MSKCC	GRCh37	14	95572014	95572014	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0039889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	14	481	0	ENST00000343455.3:c.3093+1G>T		p.X1031_splice	ENST00000343455	NM_177438.2	1031																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72828633	72828633	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs748108727		P-0039889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	79	828	0	ENST00000268489.5:c.7948C>A	p.Pro2650Thr	p.P2650T	ENST00000268489	NM_006885.3	2650	Ccg/Acg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41234510	41234510	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660129		P-0039889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	76	613	0	ENST00000357654.3:c.4268G>T	p.Ser1423Ile	p.S1423I	ENST00000357654	NM_007294.3	1423	aGc/aTc																																																																															
SDHA	6389	MSKCC	GRCh37	5	251563	251563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	74	731	0	ENST00000264932.6:c.1774C>A	p.His592Asn	p.H592N	ENST00000264932	NM_004168.2	592	Cat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112174286	112174286	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	33	421	2	ENST00000257430.4:c.2995C>T	p.Gln999Ter	p.Q999*	ENST00000257430	NM_000038.5	999	Caa/Taa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048748	180048748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	276	871	0	ENST00000261937.6:c.1814C>T	p.Pro605Leu	p.P605L	ENST00000261937	NM_182925.4	605	cCg/cTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581229	48581229	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs377767331		P-0039934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	123	517	0	ENST00000342988.3:c.533C>G	p.Ser178Ter	p.S178*	ENST00000342988	NM_005359.5	178	tCa/tGa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	221	518	1	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0039934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	436	796	2	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
APC	324	MSKCC	GRCh37	5	112155043	112155043	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0039934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	293	378	0	ENST00000257430.4:c.1312+2T>G		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
CSF3R	1441	MSKCC	GRCh37	1	36937187	36937187	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	67	778	2	ENST00000361632.4:c.1132T>C	p.Ser378Pro	p.S378P	ENST00000361632		378	Tca/Cca																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119045	70119045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	185	626	1	ENST00000245479.2:c.617C>T	p.Ala206Val	p.A206V	ENST00000245479	NM_000346.3	206	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378641	25378641	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	143	416	0	ENST00000256078.4:c.357T>G	p.Asp119Glu	p.D119E	ENST00000256078	NM_033360.2	119	gaT/gaG																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258742	16258742	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	52	508	0	ENST00000375759.3:c.6007G>T	p.Glu2003Ter	p.E2003*	ENST00000375759	NM_015001.2	2003	Gaa/Taa																																																																															
CDH1	999	MSKCC	GRCh37	16	68842397	68842398	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0040009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	173	637	0	ENST00000261769.5:c.463_464del	p.Asp155LeufsTer12	p.D155Lfs*12	ENST00000261769	NM_004360.3	153	aAG/a																																																																															
REL	5966	MSKCC	GRCh37	2	61128218	61128218	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0040009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	68	183	0	ENST00000295025.8:c.394G>T	p.Val132Phe	p.V132F	ENST00000295025	NM_002908.2	132	Gtc/Ttc																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197241	26197241	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	134	602	0	ENST00000356476.2:c.238A>C	p.Lys80Gln	p.K80Q	ENST00000356476		80	Aag/Cag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696450	47696450	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	74	469	0	ENST00000347630.2:c.373T>A	p.Phe125Ile	p.F125I	ENST00000347630	NM_001007230.1	125	Ttt/Att																																																																															
SOS1	6654	MSKCC	GRCh37	2	39251241	39251241	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	55	475	2	ENST00000402219.2:c.1112A>T	p.Glu371Val	p.E371V	ENST00000402219	NM_005633.3	371	gAa/gTa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984130	2984130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	150	473	0	ENST00000396946.4:c.400G>A	p.Glu134Lys	p.E134K	ENST00000396946	NM_032415.4	134	Gag/Aag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0040098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	132	685	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177874	56177875	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0040098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	74	395	0	ENST00000399503.3:c.2849_2850del	p.Glu950AlafsTer53	p.E950Afs*53	ENST00000399503	NM_005921.1	949	acAGag/acag																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793316	242793316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	215	1033	0	ENST00000334409.5:c.761C>T	p.Pro254Leu	p.P254L	ENST00000334409	NM_005018.2	254	cCt/cTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858702	9858702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	66	385	0	ENST00000330684.3:c.2699C>T	p.Ser900Leu	p.S900L	ENST00000330684	NM_001134407.1	900	tCa/tTa																																																																															
GNA11	2767	MSKCC	GRCh37	19	3115056	3115056	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	141	731	0	ENST00000078429.4:c.591G>T	p.Glu197Asp	p.E197D	ENST00000078429	NM_002067.2	197	gaG/gaT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916946	178916948	+	inframe_deletion	In_Frame_Del	DEL	GAT	GAT	-			P-0040098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	79	352	0	ENST00000263967.3:c.333_335del	p.Lys111_Ile112delinsAsn	p.K111_I112delinsN	ENST00000263967	NM_006218.2	111	aaGATc/aac																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161696	56161696	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0040098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	86	391	0	ENST00000399503.3:c.1193C>G	p.Ser398Ter	p.S398*	ENST00000399503	NM_005921.1	398	tCa/tGa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227941	53227949	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCACTGCG	CTCACTGCG	-			P-0040098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	137	837	0	ENST00000375401.3:c.2365_2368+5del		p.X789_splice	ENST00000375401	NM_004187.3	789																																																																																
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0040126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	293	625	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442080	52442080	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	141	524	0	ENST00000460680.1:c.269C>G	p.Ser90Cys	p.S90C	ENST00000460680	NM_004656.3	90	tCt/tGt																																																																															
SDHA	6389	MSKCC	GRCh37	5	236676	236676	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	163	335	0	ENST00000264932.6:c.1394G>T	p.Arg465Leu	p.R465L	ENST00000264932	NM_004168.2	465	cGg/cTg																																																																															
PARP1	142	MSKCC	GRCh37	1	226561922	226561929	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATAACCTC	ATAACCTC	-			P-0040126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	30	284	0	ENST00000366794.5:c.2068_2070+5del		p.X690_splice	ENST00000366794	NM_001618.3	690																																																																																
FGF19	9965	MSKCC	GRCh37	11	69514037	69514037	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	38	501	0	ENST00000294312.3:c.644A>T	p.Glu215Val	p.E215V	ENST00000294312	NM_005117.2	215	gAg/gTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17949071	17949071	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0040126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	135	548	0	ENST00000458235.1:c.1569+1G>A		p.X523_splice	ENST00000458235	NM_000215.3	523																																																																																
EPAS1	2034	MSKCC	GRCh37	2	46607512	46607512	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	69	761	0	ENST00000263734.3:c.1701G>C	p.Met567Ile	p.M567I	ENST00000263734	NM_001430.4	567	atG/atC																																																																															
REL	5966	MSKCC	GRCh37	2	61118912	61118912	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	64	376	0	ENST00000295025.8:c.105T>G	p.Ile35Met	p.I35M	ENST00000295025	NM_002908.2	35	atT/atG																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652204	36652204	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	82	639	0	ENST00000244741.5:c.326A>G	p.Asp109Gly	p.D109G	ENST00000244741	NM_000389.4	109	gAc/gGc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413253	139413253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	88	581	0	ENST00000277541.6:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000277541	NM_017617.3	297	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0040207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	197	834	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939102	36939102	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	113	958	0	ENST00000361632.4:c.607G>T	p.Val203Leu	p.V203L	ENST00000361632		203	Gtg/Ttg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	41	395	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295795	212295795	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369248674		P-0040248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	69	543	0	ENST00000342788.4:c.2518G>A	p.Val840Ile	p.V840I	ENST00000342788	NM_005235.2	840	Gtt/Att																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713818	30713818	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	56	667	0	ENST00000359013.4:c.1218G>C	p.Lys406Asn	p.K406N	ENST00000359013	NM_001024847.2	406	aaG/aaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	154	542	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0040256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	88	709	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931588		P-0040262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	235	293	0	ENST00000349496.5:c.94G>A	p.Asp32Asn	p.D32N	ENST00000349496	NM_001904.3	32	Gac/Aac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075157	16075157	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	275	344	0	ENST00000268712.3:c.395C>G	p.Pro132Arg	p.P132R	ENST00000268712	NM_006311.3	132	cCg/cGg																																																																															
MGA	23269	MSKCC	GRCh37	15	42052559	42052563	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	GAGTG	GAGTG	A			P-0040262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	251	395	0	ENST00000219905.7:c.7230_7234delinsA	p.Trp2410Ter	p.W2410*	ENST00000219905	NM_001164273.1	2410	tgGAGTGac/tgAac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	128	398	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0040354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	66	185	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	26	142	1	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380279	25380279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	72	304	0	ENST00000256078.4:c.179G>A	p.Gly60Asp	p.G60D	ENST00000256078	NM_033360.2	60	gGt/gAt																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84391521	84391521	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs542570943		P-0040354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	58	223	0	ENST00000321945.7:c.311G>A	p.Arg104His	p.R104H	ENST00000321945	NM_139076.2	104	cGt/cAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0040496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	184	820	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0040496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	128	326	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0040496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	166	281	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108115594	108115594	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs730881336		P-0040496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	107	427	0	ENST00000278616.4:c.742C>T	p.Arg248Ter	p.R248*	ENST00000278616	NM_000051.3	248	Cga/Tga																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508260	106508260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	79	376	0	ENST00000359195.3:c.254C>T	p.Ala85Val	p.A85V	ENST00000359195	NM_002649.2	85	gCg/gTg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982102	201982103	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTCA			P-0040496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	227	880	0	ENST00000359651.3:c.627_630dup	p.Asp211LeufsTer7	p.D211Lfs*7	ENST00000359651		209	tcc/tcCTCAc																																																																															
ATM	472	MSKCC	GRCh37	11	108186613	108186613	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	106	342	0	ENST00000278616.4:c.6070G>C	p.Gly2024Arg	p.G2024R	ENST00000278616	NM_000051.3	2024	Ggg/Cgg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458552	12458552	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	210	663	0	ENST00000287820.6:c.1169A>C	p.Asp390Ala	p.D390A	ENST00000287820	NM_015869.4	390	gAc/gCc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943672	71943672	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0040509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	122	545	0	ENST00000298229.2:c.1715G>C	p.Arg572Thr	p.R572T	ENST00000298229	NM_001567.3	572	aGg/aCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0040524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	146	390	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	259	559	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570301	87570301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	261	642	0	ENST00000277120.3:c.2041G>A	p.Val681Ile	p.V681I	ENST00000277120		681	Gtc/Atc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50815287	50815287	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779388734		P-0040524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	227	556	0	ENST00000398568.2:c.1640C>T	p.Pro547Leu	p.P547L	ENST00000398568	NM_001042412.1	547	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	392	583	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	139	441	0	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	145	445	0	ENST00000346208.3:c.1300dup	p.His434ProfsTer73	p.H434Pfs*73	ENST00000346208		433	cac/caCc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0040749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	26	675	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828602	72828603	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	44	816	0	ENST00000268489.5:c.7978dup	p.Tyr2660LeufsTer68	p.Y2660Lfs*68	ENST00000268489	NM_006885.3	2660	tat/tTat																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413278	139413278	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0040749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	176	862	0	ENST00000277541.6:c.866-2A>T		p.X289_splice	ENST00000277541	NM_017617.3	289																																																																																
CBL	867	MSKCC	GRCh37	11	119148891	119148891	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs267606706		P-0040781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	11	292	1	ENST00000264033.4:c.1111T>C	p.Tyr371His	p.Y371H	ENST00000264033	NM_005188.3	371	Tac/Cac																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440923	52440923	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	139	562	0	ENST00000460680.1:c.581G>A	p.Gly194Glu	p.G194E	ENST00000460680	NM_004656.3	194	gGg/gAg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607614	46607614	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	139	839	0	ENST00000263734.3:c.1803C>G	p.His601Gln	p.H601Q	ENST00000263734	NM_001430.4	601	caC/caG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0040801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	143	764	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438170	56438171	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0040801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	353	1119	0	ENST00000407977.2:c.822_823del	p.Ile274MetfsTer7	p.I274Mfs*7	ENST00000407977		274	atCTgt/atgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	113	296	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	55	386	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	46	286	1	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	50	163	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TET2	54790	MSKCC	GRCh37	4	106197505	106197506	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	45	238	0	ENST00000380013.4:c.5844dup	p.Val1949SerfsTer7	p.V1949Sfs*7	ENST00000380013	NM_001127208.2	1946	-/A																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104893810		P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	179	293	0	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249456	153249456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	50	331	0	ENST00000281708.4:c.1322G>A	p.Arg441Gln	p.R441Q	ENST00000281708	NM_033632.3	441	cGg/cAg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979357	93979357	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	37	240	0	ENST00000369303.4:c.1471T>C	p.Ser491Pro	p.S491P	ENST00000369303	NM_004440.3	491	Tca/Cca																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605868	46605868	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745977062		P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	110	478	1	ENST00000263734.3:c.1516G>A	p.Ala506Thr	p.A506T	ENST00000263734	NM_001430.4	506	Gcc/Acc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131977952	131977952	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201810		P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	124	281	0	ENST00000265335.6:c.3835C>T	p.Arg1279Cys	p.R1279C	ENST00000265335		1279	Cgt/Tgt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861813	57861813	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142822754		P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	109	491	0	ENST00000228682.2:c.1114C>T	p.Arg372Cys	p.R372C	ENST00000228682	NM_005269.2	372	Cgc/Tgc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246653	41246653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	170	377	1	ENST00000357654.3:c.895G>A	p.Val299Ile	p.V299I	ENST00000357654	NM_007294.3	299	Gta/Ata																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182665369	182665369	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	29	116	0	ENST00000292782.4:c.572A>G	p.Lys191Arg	p.K191R	ENST00000292782	NM_020640.2	191	aAa/aGa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675693	30675693	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	170	554	0	ENST00000376406.3:c.2663A>G	p.Glu888Gly	p.E888G	ENST00000376406	NM_014641.2	888	gAg/gGg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222457	53222457	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782179560		P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	311	717	3	ENST00000375401.3:c.4375C>T	p.Arg1459Trp	p.R1459W	ENST00000375401	NM_004187.3	1459	Cgg/Tgg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755445139		P-0041062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	97	726	4	ENST00000261937.6:c.89dup	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618716	37618719	+	frameshift_variant	Frame_Shift_Del	DEL	AAAA	AAAA	-			P-0041062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	107	558	0	ENST00000447079.4:c.394_397del	p.Lys132AlafsTer11	p.K132Afs*11	ENST00000447079	NM_015083.1	131	gAAAAa/ga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462214	120462214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	79	437	0	ENST00000256646.2:c.5502G>T	p.Leu1834Phe	p.L1834F	ENST00000256646	NM_024408.3	1834	ttG/ttT																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619280	37619281	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0041062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	151	473	0	ENST00000447079.4:c.957_958del	p.Tyr319Ter	p.Y319*	ENST00000447079	NM_015083.1	319	tAC/t																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44923045	44923048	+	frameshift_variant	Frame_Shift_Del	DEL	CTAT	CTAT	-			P-0041196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	71	302	0	ENST00000377967.4:c.1909_1912del	p.Ser637ThrfsTer53	p.S637Tfs*53	ENST00000377967	NM_021140.2	636	CTATct/ct																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0041202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	295	543	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0041202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	8	247	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177458	56177458	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs189290632		P-0041202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	89	354	0	ENST00000399503.3:c.2431A>G	p.Met811Val	p.M811V	ENST00000399503	NM_005921.1	811	Atg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	140	440	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0041254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	153	629	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0041254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	116	310	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0041254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	143	337	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	33	256	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	283	329	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7576891	7576891	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0041254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	253	582	0	ENST00000269305.4:c.955A>T	p.Lys319Ter	p.K319*	ENST00000269305	NM_001126112.2	319	Aag/Tag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81965231	81965231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	199	515	2	ENST00000359376.3:c.2711G>A	p.Arg904Gln	p.R904Q	ENST00000359376	NM_002661.3	904	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576887	7576887	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	244	577	0	ENST00000269305.4:c.959A>G	p.Lys320Arg	p.K320R	ENST00000269305	NM_001126112.2	320	aAg/aGg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554484	63554492	+	inframe_deletion	In_Frame_Del	DEL	TAAGGAGTG	TAAGGAGTG	-			P-0041254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	238	617	0	ENST00000307078.5:c.247_255del	p.His83_Leu85del	p.H83_L85del	ENST00000307078	NM_004655.3	83	CACTCCTTA/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	39	278	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0041298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	40	541	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500832	8500832	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756198535		P-0041298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	25	351	0	ENST00000356435.5:c.2050C>T	p.Arg684Trp	p.R684W	ENST00000356435		684	Cgg/Tgg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212293154	212293154	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	21	269	0	ENST00000342788.4:c.2698C>T	p.Gln900Ter	p.Q900*	ENST00000342788	NM_005235.2	900	Cag/Tag																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78433885	78433885	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0041298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	21	244	0	ENST00000370768.2:c.214C>T	p.Gln72Ter	p.Q72*	ENST00000370768	NM_003902.3	72	Caa/Taa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970995	21971002	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCTCCT	CAGCTCCT	-			P-0041298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	24	435	0	ENST00000304494.5:c.356_363del	p.Glu119GlyfsTer20	p.E119Gfs*20	ENST00000304494	NM_000077.4	119	gAGGAGCTG/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0041317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	30	564	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0041317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	18	466	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0041317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	46	281	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0041317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	147	323	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0041317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	81	259	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0041317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	93	285	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367288	50367288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775793261		P-0041317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	71	328	0	ENST00000331340.3:c.95C>T	p.Pro32Leu	p.P32L	ENST00000331340	NM_006060.4	32	cCg/cTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353918	15353918	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	19	326	2	ENST00000263377.2:c.2962C>T	p.Gln988Ter	p.Q988*	ENST00000263377	NM_058243.2	988	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445229	49445229	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371911838		P-0041317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	70	727	1	ENST00000301067.7:c.2237G>A	p.Arg746Gln	p.R746Q	ENST00000301067	NM_003482.3	746	cGg/cAg																																																																															
NF1	4763	MSKCC	GRCh37	17	29665762	29665762	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	48	239	0	ENST00000358273.4:c.6860G>C	p.Ser2287Thr	p.S2287T	ENST00000358273	NM_001042492.2	2287	aGt/aCt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681045	117681045	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	39	362	0	ENST00000368508.3:c.3575A>C	p.Asp1192Ala	p.D1192A	ENST00000368508	NM_002944.2	1192	gAt/gCt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123164920	123164920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	63	274	0	ENST00000218089.9:c.233G>A	p.Gly78Glu	p.G78E	ENST00000218089	NM_001042749.1	78	gGa/gAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0041456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	106	228	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115435	115115437	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-	rs1319662056		P-0041456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	134	350	0	ENST00000257566.3:c.889_891del	p.Asn297del	p.N297del	ENST00000257566	NM_016569.3	297	AAC/-																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100340	8100341	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0041456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	169	449	0	ENST00000346208.3:c.315_316dup	p.His106ProfsTer90	p.H106Pfs*90	ENST00000346208		105	agc/agCCc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671816	30671816	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	61	414	0	ENST00000376406.3:c.5144T>G	p.Ile1715Ser	p.I1715S	ENST00000376406	NM_014641.2	1715	aTt/aGt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681579	30681579	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0041456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	51	307	0	ENST00000376406.3:c.517+1G>C		p.X173_splice	ENST00000376406	NM_014641.2	173																																																																																
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0041463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	297	708	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0041463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	229	637	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187221	38187222	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	467	867	0	ENST00000317025.8:c.1255dup	p.Thr419AsnfsTer28	p.T419Nfs*28	ENST00000317025	NM_023034.1	419	acc/aAcc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016634	12016634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	137	420	0	ENST00000353533.5:c.770C>A	p.Ser257Tyr	p.S257Y	ENST00000353533	NM_003010.3	257	tCt/tAt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591246	67591246	+	splice_acceptor_variant	Splice_Site	DEL	A	A	-			P-0041463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	246	485	0	ENST00000274335.5:c.1746-2del		p.X582_splice	ENST00000274335		582																																																																																
IRF4	3662	MSKCC	GRCh37	6	397235	397235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	88	471	0	ENST00000380956.4:c.620G>A	p.Gly207Asp	p.G207D	ENST00000380956	NM_001195286.1	207	gGc/gAc																																																																															
BTK	695	MSKCC	GRCh37	X	100608966	100608966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	217	541	0	ENST00000308731.7:c.1642G>A	p.Asp548Asn	p.D548N	ENST00000308731	NM_000061.2	548	Gat/Aat																																																																															
MET	4233	MSKCC	GRCh37	7	116412030	116412048	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TACTTTTCCAGAAGGTATA	TACTTTTCCAGAAGGTATA	-			P-0041506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	80	908	0	ENST00000397752.3:c.3016_3028+6del		p.X1006_splice	ENST00000397752	NM_000245.2	1006																																																																																
GATA3	2625	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0041508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	307	544	0	ENST00000346208.3:c.1300dup	p.His434ProfsTer73	p.H434Pfs*73	ENST00000346208		433	cac/caCc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115852	8115853	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-	rs1085307641		P-0041534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	196	380	0	ENST00000346208.3:c.1198_1199del	p.Met400ValfsTer106	p.M400Vfs*106	ENST00000346208		400	ATg/g																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0041569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	18	345	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626883	14626883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	57	681	0	ENST00000254322.2:c.892C>T	p.Pro298Ser	p.P298S	ENST00000254322	NM_006145.1	298	Cct/Tct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	23	625	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645760	12645760	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587777588		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	34	442	0	ENST00000251849.4:c.709G>A	p.Ala237Thr	p.A237T	ENST00000251849	NM_002880.3	237	Gcc/Acc																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	85	371	0	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	177	705	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	109	571	4	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170027	32170027	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746443332		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	216	886	0	ENST00000375023.3:c.3581C>T	p.Pro1194Leu	p.P1194L	ENST00000375023	NM_004557.3	1194	cCg/cTg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	141	692	6	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777838	3777838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863223334		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	231	1002	2	ENST00000262367.5:c.7210G>A	p.Glu2404Lys	p.E2404K	ENST00000262367	NM_004380.2	2404	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514495		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	193	629	1	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	78	282	1	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	135	436	2	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	36	156	1	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	175	749	5	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	163	863	3	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204842	128204842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1294458213		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	78	909	1	ENST00000341105.2:c.599del	p.Gly200ValfsTer18	p.G200Vfs*18	ENST00000341105	NM_032638.4	200	gGt/gt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3831226	3831226	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1398406959		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	98	351	0	ENST00000262367.5:c.1655C>T	p.Pro552Leu	p.P552L	ENST00000262367	NM_004380.2	552	cCg/cTg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137710	64137710	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1441850972		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	221	849	1	ENST00000334205.4:c.1811C>T	p.Ser604Leu	p.S604L	ENST00000334205	NM_003942.2	604	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913528		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	253	499	0	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	206	735	2	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437605	56437605	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1329721997		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	135	510	0	ENST00000407977.2:c.857G>A	p.Arg286Gln	p.R286Q	ENST00000407977		286	cGg/cAg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554512	63554512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	44	630	1	ENST00000307078.5:c.227C>T	p.Thr76Ile	p.T76I	ENST00000307078	NM_004655.3	76	aCc/aTc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	110	446	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492937	56492937	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	45	227	0	ENST00000407977.2:c.2T>C	p.Met1?	p.M1?	ENST00000407977		1	aTg/aCg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905055	50905055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	160	619	2	ENST00000440232.2:c.342del	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	113	Ggg/gg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138915	64138915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	105	503	1	ENST00000334205.4:c.2287del	p.Arg763AlafsTer21	p.R763Afs*21	ENST00000334205	NM_003942.2	761	gCc/gc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5044449	5044449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371826393		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	121	448	0	ENST00000381652.3:c.397C>T	p.Arg133Trp	p.R133W	ENST00000381652	NM_004972.3	133	Cgg/Tgg																																																																															
RB1	5925	MSKCC	GRCh37	13	49030416	49030416	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	115	396	1	ENST00000267163.4:c.1891C>T	p.Gln631Ter	p.Q631*	ENST00000267163	NM_000321.2	631	Caa/Taa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55136804	55136804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	82	325	0	ENST00000257290.5:c.1126C>T	p.Arg376Ter	p.R376*	ENST00000257290	NM_006206.4	376	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106649	27106649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	176	670	0	ENST00000324856.7:c.6260G>A	p.Gly2087Glu	p.G2087E	ENST00000324856	NM_006015.4	2087	gGa/gAa																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119666143	119666143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769576748		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	71	396	0	ENST00000316626.5:c.338G>A	p.Arg113His	p.R113H	ENST00000316626		113	cGt/cAt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52668729	52668729	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759670972		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	148	413	0	ENST00000394830.3:c.1190G>A	p.Arg397Gln	p.R397Q	ENST00000394830	NM_018313.4	397	cGg/cAg																																																																															
RARA	5914	MSKCC	GRCh37	17	38512474	38512474	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770732457		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	175	919	0	ENST00000254066.5:c.1385C>T	p.Pro462Leu	p.P462L	ENST00000254066	NM_000964.3	462	cCg/cTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	204	1012	6	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141542584	141542584	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1238499211		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	157	638	0	ENST00000220592.5:c.2402C>T	p.Ala801Val	p.A801V	ENST00000220592	NM_012154.3	801	gCg/gTg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	197	462	0	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
POLE	5426	MSKCC	GRCh37	12	133240613	133240613	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201115064		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	225	483	3	ENST00000320574.5:c.2683G>A	p.Ala895Thr	p.A895T	ENST00000320574	NM_006231.2	895	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	168	882	3	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438211	49438211	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	331	747	1	ENST00000301067.7:c.5058del	p.Lys1686AsnfsTer36	p.K1686Nfs*36	ENST00000301067	NM_003482.3	1686	aaA/aa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470920	25470920	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773312511		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	155	710	0	ENST00000264709.3:c.841G>A	p.Glu281Lys	p.E281K	ENST00000264709	NM_175629.2	281	Gag/Aag																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	213	875	2	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																															
BARD1	580	MSKCC	GRCh37	2	215645975	215645975	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	34	427	1	ENST00000260947.4:c.623del	p.Lys208ArgfsTer4	p.K208Rfs*4	ENST00000260947	NM_000465.2	208	aAg/ag																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453399	40453399	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs759027671		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	221	844	6	ENST00000345506.4:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000345506	NM_003152.3	366	Ccc/cc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15284919	15284919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	204	927	1	ENST00000263388.2:c.4696G>A	p.Glu1566Lys	p.E1566K	ENST00000263388	NM_000435.2	1566	Gaa/Aaa																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910774	29910774	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs9260139		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	160	397	1	ENST00000376809.5:c.314T>C	p.Leu105Pro	p.L105P	ENST00000376809	NM_002116.7	105	cTg/cCg																																																																															
ID3	3399	MSKCC	GRCh37	1	23885632	23885632	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	101	501	0	ENST00000374561.5:c.286del	p.His96ThrfsTer30	p.H96Tfs*30	ENST00000374561	NM_002167.4	96	Cac/ac																																																																															
UPF1	5976	MSKCC	GRCh37	19	18966781	18966781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	200	882	1	ENST00000262803.5:c.1592C>T	p.Thr531Met	p.T531M	ENST00000262803	NM_002911.3	531	aCg/aTg																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612776	228612776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	181	666	0	ENST00000366696.1:c.251G>A	p.Arg84His	p.R84H	ENST00000366696	NM_003493.2	84	cGc/cAc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607420	46607420	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137853036		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	229	854	1	ENST00000263734.3:c.1609G>A	p.Gly537Arg	p.G537R	ENST00000263734	NM_001430.4	537	Ggg/Agg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570293	87570293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202111708		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	133	588	0	ENST00000277120.3:c.2033C>T	p.Ala678Val	p.A678V	ENST00000277120		678	gCg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213990	36213990	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs543584446		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	191	947	1	ENST00000222270.7:c.2816C>T	p.Thr939Ile	p.T939I	ENST00000222270	NM_014727.1	939	aCa/aTa																																																																															
TET1	80312	MSKCC	GRCh37	10	70450715	70450715	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs576727317		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	167	521	1	ENST00000373644.4:c.5555C>T	p.Pro1852Leu	p.P1852L	ENST00000373644	NM_030625.2	1852	cCg/cTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777936	3777936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	210	1035	1	ENST00000262367.5:c.7112C>A	p.Pro2371His	p.P2371H	ENST00000262367	NM_004380.2	2371	cCt/cAt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11194508	11194508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	121	539	0	ENST00000361445.4:c.5146C>T	p.His1716Tyr	p.H1716Y	ENST00000361445	NM_004958.3	1716	Cac/Tac																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743754	46743754	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs368105178		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	166	740	1	ENST00000371975.4:c.2044C>T	p.Arg682Ter	p.R682*	ENST00000371975	NM_003579.3	682	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710637	114710637	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	163	485	0	ENST00000543371.1:c.122T>C	p.Leu41Ser	p.L41S	ENST00000543371	NM_001198531.1	41	tTa/tCa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022376	12022376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	230	866	0	ENST00000396373.4:c.486del	p.Arg163GlyfsTer46	p.R163Gfs*46	ENST00000396373	NM_001987.4	161	aCc/ac																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245699	46245699	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	102	475	0	ENST00000334344.6:c.3793G>T	p.Val1265Phe	p.V1265F	ENST00000334344	NM_152641.2	1265	Gtc/Ttc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434315	49434315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	244	997	0	ENST00000301067.7:c.7238C>T	p.Ala2413Val	p.A2413V	ENST00000301067	NM_003482.3	2413	gCc/gTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133254219	133254219	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060500862		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	310	526	0	ENST00000320574.5:c.665G>A	p.Arg222His	p.R222H	ENST00000320574	NM_006231.2	222	cGc/cAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435996	110435996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	217	912	0	ENST00000375856.3:c.2405G>A	p.Cys802Tyr	p.C802Y	ENST00000375856	NM_003749.2	802	tGc/tAc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562612	95562612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	88	307	1	ENST00000343455.3:c.4645C>T	p.His1549Tyr	p.H1549Y	ENST00000343455	NM_177438.2	1549	Cac/Tac																																																																															
AKT1	207	MSKCC	GRCh37	14	105237186	105237186	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	122	437	0	ENST00000349310.3:c.1261-2A>G		p.X421_splice	ENST00000349310	NM_001014432.1	421																																																																																
NUP93	9688	MSKCC	GRCh37	16	56782311	56782311	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs573467287		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	225	635	1	ENST00000308159.5:c.152C>T	p.Thr51Met	p.T51M	ENST00000308159	NM_014669.4	51	aCg/aTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15965158	15965158	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765553300		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	83	363	0	ENST00000268712.3:c.5438G>A	p.Arg1813His	p.R1813H	ENST00000268712	NM_006311.3	1813	cGt/cAt																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40460232	40460232	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746268770		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	149	663	0	ENST00000345506.4:c.1943C>T	p.Thr648Met	p.T648M	ENST00000345506	NM_003152.3	648	aCg/aTg																																																																															
BCL2	596	MSKCC	GRCh37	18	60985740	60985740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	21	227	0	ENST00000333681.4:c.160G>A	p.Gly54Arg	p.G54R	ENST00000333681		54	Ggg/Agg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5208030	5208030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	181	612	0	ENST00000357368.4:c.5681G>A	p.Ser1894Asn	p.S1894N	ENST00000357368	NM_002850.3	1894	aGc/aAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220126	5220126	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781134304		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	134	631	0	ENST00000357368.4:c.3589C>T	p.Arg1197Trp	p.R1197W	ENST00000357368	NM_002850.3	1197	Cgg/Tgg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15374344	15374344	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200659364		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	139	613	0	ENST00000263377.2:c.1228C>T	p.Arg410Cys	p.R410C	ENST00000263377	NM_058243.2	410	Cgt/Tgt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637390	47637391	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	194	653	0	ENST00000233146.2:c.528_529del	p.Cys176Ter	p.C176*	ENST00000233146	NM_000251.2	175	cTG/c																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164595	36164595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	123	594	1	ENST00000300305.3:c.1280G>A	p.Arg427His	p.R427H	ENST00000300305		427	cGc/cAc																																																																															
NF2	4771	MSKCC	GRCh37	22	30035201	30035201	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	115	458	0	ENST00000338641.4:c.363G>T	p.Gln121His	p.Q121H	ENST00000338641	NM_000268.3	121	caG/caT																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807357	1807357	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	156	721	4	ENST00000260795.2:c.1610del	p.Asn537ThrfsTer89	p.N537Tfs*89	ENST00000260795		536	Aaa/aa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187531001	187531001	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754491592		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	154	501	3	ENST00000441802.2:c.10022C>T	p.Thr3341Met	p.T3341M	ENST00000441802	NM_005245.3	3341	aCg/aTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187531085	187531085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	115	425	0	ENST00000441802.2:c.9938C>A	p.Pro3313His	p.P3313H	ENST00000441802	NM_005245.3	3313	cCt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540359	187540359	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	113	482	0	ENST00000441802.2:c.7381del	p.Tyr2461ThrfsTer20	p.Y2461Tfs*20	ENST00000441802	NM_005245.3	2461	Tac/ac																																																																															
E2F3	1871	MSKCC	GRCh37	6	20483037	20483037	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	34	353	0	ENST00000346618.3:c.770A>G	p.Gln257Arg	p.Q257R	ENST00000346618	NM_001949.4	257	cAa/cGa																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858440	27858440	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	91	451	0	ENST00000359303.2:c.131del	p.Pro44GlnfsTer47	p.P44Qfs*47	ENST00000359303	NM_003535.2	44	cCa/ca																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912363	29912363	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773946546		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	67	601	0	ENST00000376809.5:c.982G>A	p.Ala328Thr	p.A328T	ENST00000376809	NM_002116.7	328	Gct/Act																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288657	33288657	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1213838920		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	85	409	0	ENST00000374542.5:c.895C>T	p.Arg299Ter	p.R299*	ENST00000374542	NM_001141970.1	299	Cga/Tga																																																																															
ETV1	2115	MSKCC	GRCh37	7	14017073	14017073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	122	299	0	ENST00000405192.2:c.214C>T	p.Pro72Ser	p.P72S	ENST00000405192	NM_001163147.1	72	Cca/Tca																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520098	106520098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	22	189	0	ENST00000359195.3:c.2526G>A	p.Met842Ile	p.M842I	ENST00000359195	NM_002649.2	842	atG/atA																																																																															
BRAF	673	MSKCC	GRCh37	7	140508768	140508768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	109	436	1	ENST00000288602.6:c.532C>T	p.Arg178Ter	p.R178*	ENST00000288602	NM_004333.4	178	Cga/Tga																																																																															
MED12	9968	MSKCC	GRCh37	X	70342143	70342143	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	110	548	0	ENST00000374080.3:c.1195A>G	p.Ile399Val	p.I399V	ENST00000374080		399	Att/Gtt																																																																															
BTK	695	MSKCC	GRCh37	X	100608911	100608911	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057521814		P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	150	484	0	ENST00000308731.7:c.1697C>T	p.Pro566Leu	p.P566L	ENST00000308731	NM_000061.2	566	cCg/cTg																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152853844	152853844	+	synonymous_variant	Silent	SNP	G	G	T			P-0041576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	16	216	1	ENST00000406277.2:c.720C>A	p.Thr240=	p.T240=	ENST00000406277	NM_152274.4	240	acC/acA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0041604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	115	838	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0041604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	65	415	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0041604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	35	305	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	141	280	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	250	757	0	ENST00000269305.4:c.434T>A	p.Leu145Gln	p.L145Q	ENST00000269305	NM_001126112.2	145	cTg/cAg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206649544	206649544	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370426628		P-0041682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	144	487	0	ENST00000367120.3:c.379C>T	p.Arg127Trp	p.R127W	ENST00000367120	NM_014002.3	127	Cgg/Tgg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419949	152419949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	111	636	1	ENST00000206249.3:c.1636G>A	p.Ala546Thr	p.A546T	ENST00000206249	NM_000125.3	546	Gcc/Acc																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495647	72495647	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0041697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	66	311	0	ENST00000477973.2:c.423G>A	p.Arg142Lys	p.R142K	ENST00000477973	NM_012234.5	142	aGa/aAa																																																																															
ERF	2077	MSKCC	GRCh37	19	42754644	42754644	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	97	766	0	ENST00000222329.4:c.96T>G	p.Phe32Leu	p.F32L	ENST00000222329	NM_006494.2	32	ttT/ttG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0042054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	693	830	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0042054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	191	507	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	79	294	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61213503	61213503	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768954974		P-0042054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	196	550	0	ENST00000301761.2:c.461G>A	p.Arg154His	p.R154H	ENST00000301761	NM_017841.2	154	cGt/cAt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483946	88483946	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	54	770	0	ENST00000360948.2:c.1624del	p.Arg542GlufsTer30	p.R542Efs*30	ENST00000360948	NM_001012338.2	542	Cga/ga																																																																															
TET2	54790	MSKCC	GRCh37	4	106157699	106157699	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs765107506		P-0042054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	81	395	0	ENST00000380013.4:c.2600A>G	p.Tyr867Cys	p.Y867C	ENST00000380013	NM_001127208.2	867	tAt/tGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878640	151878640	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	125	642	0	ENST00000262189.6:c.6305A>T	p.His2102Leu	p.H2102L	ENST00000262189	NM_170606.2	2102	cAt/cTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0042100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	141	405	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252966	36252967	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0042100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	112	255	0	ENST00000300305.3:c.395_396del	p.Val132AspfsTer5	p.V132Dfs*5	ENST00000300305		132	gTG/g																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917681	178917681	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	44	158	0	ENST00000263967.3:c.556G>C	p.Asp186His	p.D186H	ENST00000263967	NM_006218.2	186	Gat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	132	449	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732964	30732964	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	195	487	0	ENST00000359013.4:c.1652A>G	p.Glu551Gly	p.E551G	ENST00000359013	NM_001024847.2	551	gAg/gGg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643770	52643771	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	135	675	0	ENST00000394830.3:c.2125dup	p.Ile709AsnfsTer14	p.I709Nfs*14	ENST00000394830	NM_018313.4	709	att/aAtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0042207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	140	703	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46251044	46251044	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145438835		P-0042207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	86	374	0	ENST00000371998.3:c.53G>A	p.Arg18His	p.R18H	ENST00000371998		18	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0042219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	121	385	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993128	72993128	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142256050		P-0042219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	217	850	1	ENST00000268489.5:c.917G>A	p.Arg306Gln	p.R306Q	ENST00000268489	NM_006885.3	306	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0042219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	124	658	0	ENST00000269305.4:c.782+1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0042226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	110	467	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	155	1072	0	ENST00000269305.4:c.398T>G	p.Met133Arg	p.M133R	ENST00000269305	NM_001126112.2	133	aTg/aGg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T	rs730881673		P-0042226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	51	556	0	ENST00000304494.5:c.131dup	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401368	139401368	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773926521		P-0042226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	120	961	1	ENST00000277541.6:c.3701G>A	p.Arg1234Gln	p.R1234Q	ENST00000277541	NM_017617.3	1234	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs1057517840		P-0042239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	184	775	0	ENST00000269305.4:c.626_627del	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
APC	324	MSKCC	GRCh37	5	112173451	112173451	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	65	341	0	ENST00000257430.4:c.2162del	p.Gly721GlufsTer6	p.G721Efs*6	ENST00000257430	NM_000038.5	720	atG/at																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117851	70117851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	156	645	2	ENST00000245479.2:c.319C>T	p.Arg107Trp	p.R107W	ENST00000245479	NM_000346.3	107	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424740	49424740	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs917419349		P-0042239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	174	819	2	ENST00000301067.7:c.13607G>A	p.Arg4536Gln	p.R4536Q	ENST00000301067	NM_003482.3	4536	cGa/cAa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56488250	56488250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs865824076		P-0042239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	181	732	1	ENST00000267101.3:c.1769C>T	p.Pro590Leu	p.P590L	ENST00000267101	NM_001982.3	590	cCc/cTc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876349	35876349	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	106	605	0	ENST00000303115.3:c.1141A>G	p.Ile381Val	p.I381V	ENST00000303115	NM_002185.3	381	Att/Gtt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444282	50444282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	74	399	0	ENST00000331340.3:c.212G>T	p.Cys71Phe	p.C71F	ENST00000331340	NM_006060.4	71	tGt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249013	55249014	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACCCCC			P-0042274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	235	770	0	ENST00000275493.2:c.2314_2319dup	p.Pro772_His773dup	p.P772_H773dup	ENST00000275493	NM_005228.3	772	aac/aACCCCCac																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609600	81609600	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	97	607	0	ENST00000298171.2:c.1198C>A	p.Pro400Thr	p.P400T	ENST00000298171	NM_000369.2	400	Ccc/Acc																																																																															
INSR	3643	MSKCC	GRCh37	19	7142932	7142932	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs371294434		P-0042274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	283	1012	1	ENST00000302850.5:c.2437C>T	p.Arg813Ter	p.R813*	ENST00000302850	NM_000208.2	813	Cga/Tga																																																																															
CALR	811	MSKCC	GRCh37	19	13050031	13050031	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	74	589	0	ENST00000316448.5:c.175G>T	p.Asp59Tyr	p.D59Y	ENST00000316448	NM_004343.3	59	Gac/Tac																																																																															
KDR	3791	MSKCC	GRCh37	4	55970990	55970990	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	88	628	1	ENST00000263923.4:c.1807T>A	p.Cys603Ser	p.C603S	ENST00000263923	NM_002253.2	603	Tgc/Agc																																																																															
ATRX	546	MSKCC	GRCh37	X	76855282	76855282	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	49	154	0	ENST00000373344.5:c.5705T>C	p.Phe1902Ser	p.F1902S	ENST00000373344	NM_000489.3	1902	tTt/tCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579545	7579545	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	301	768	0	ENST00000269305.4:c.142del	p.Asp48ThrfsTer75	p.D48Tfs*75	ENST00000269305	NM_001126112.2	48	Gac/ac																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856433	111856433	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1046057518		P-0042276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	19	177	1	ENST00000341259.2:c.484G>A	p.Ala162Thr	p.A162T	ENST00000341259	NM_005475.2	162	Gcc/Acc																																																																															
CBL	867	MSKCC	GRCh37	11	119169139	119169139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	43	491	0	ENST00000264033.4:c.2323G>A	p.Asp775Asn	p.D775N	ENST00000264033	NM_005188.3	775	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0042316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	87	395	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519986		P-0042316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	450	795	0	ENST00000269305.4:c.809T>G	p.Phe270Cys	p.F270C	ENST00000269305	NM_001126112.2	270	tTt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	71	390	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0042377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	236	423	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	148	800	0	ENST00000269305.4:c.398T>G	p.Met133Arg	p.M133R	ENST00000269305	NM_001126112.2	133	aTg/aGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	75	453	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786204864		P-0042476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	33	508	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266822	198266822	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	274	682	0	ENST00000335508.6:c.2110A>T	p.Ile704Phe	p.I704F	ENST00000335508	NM_012433.2	704	Atc/Ttc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0042487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	17	299	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692848	89692848	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	13	200	0	ENST00000371953.3:c.332G>A	p.Trp111Ter	p.W111*	ENST00000371953	NM_000314.4	111	tGg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579397	7579398	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	44	954	0	ENST00000269305.4:c.289dup	p.Val97GlyfsTer52	p.V97Gfs*52	ENST00000269305	NM_001126112.2	97	gtc/gGtc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916920	178916929	+	protein_altering_variant	In_Frame_Del	DEL	GAACCAGTAG	GAACCAGTAG	AAAA			P-0042509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	76	472	1	ENST00000263967.3:c.307_316delinsAAAA	p.Glu103_Gly106delinsLysSer	p.E103_G106delinsKS	ENST00000263967	NM_006218.2	103	GAACCAGTAGgc/AAAAgc																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0042542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	26	296	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0042542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	47	354	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0042542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	70	861	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129620	2129620	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs878854092		P-0042542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	44	1060	2	ENST00000219476.3:c.3347C>T	p.Ala1116Val	p.A1116V	ENST00000219476	NM_000548.3	1116	gCt/gTt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129133	152129133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	44	921	0	ENST00000206249.3:c.86C>T	p.Pro29Leu	p.P29L	ENST00000206249	NM_000125.3	29	cCg/cTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023919	27023919	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1438830885		P-0042542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	11	69	0	ENST00000324856.7:c.1025C>T	p.Ala342Val	p.A342V	ENST00000324856	NM_006015.4	342	gCg/gTg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633607	69633607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	10	109	0	ENST00000334134.2:c.95G>A	p.Arg32His	p.R32H	ENST00000334134	NM_005247.2	32	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0042546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	32	440	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0042546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	42	531	0	ENST00000269305.4:c.673-2A>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	55	485	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0042603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	46	732	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866689	37866689	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149210045		P-0042603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	325	845	0	ENST00000269571.5:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269571		286	Gag/Aag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266028	41266605	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	GAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACAT	GAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACAT	-			P-0042603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	20	288	0	ENST00000349496.5:c.26_403del		p.X9_splice	ENST00000349496	NM_001904.3	9	GAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACAT/-																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592037	67592037	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	57	279	0	ENST00000274335.5:c.1853A>G	p.His618Arg	p.H618R	ENST00000274335		618	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	40	565	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730882026		P-0042604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	101	799	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	25	477	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971170	21971170	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	40	492	0	ENST00000304494.5:c.188T>G	p.Leu63Arg	p.L63R	ENST00000304494	NM_000077.4	63	cTg/cGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0042670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	90	379	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519733		P-0042670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	175	1042	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716095	243716095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	102	597	1	ENST00000263826.5:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000263826	NM_005465.4	367	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031893	10031893	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	143	717	1	ENST00000330684.3:c.930C>A	p.Phe310Leu	p.F310L	ENST00000330684	NM_001134407.1	310	ttC/ttA																																																																															
ALK	238	MSKCC	GRCh37	2	29462662	29462662	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762395127		P-0042670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	364	928	0	ENST00000389048.3:c.2239G>A	p.Gly747Arg	p.G747R	ENST00000389048	NM_004304.4	747	Ggg/Agg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653792	89653792	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	249	332	0	ENST00000371953.3:c.92del	p.Asn31ThrfsTer23	p.N31Tfs*23	ENST00000371953	NM_000314.4	30	ccA/cc																																																																															
CDH1	999	MSKCC	GRCh37	16	68844229	68844229	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	212	648	1	ENST00000261769.5:c.817G>T	p.Glu273Ter	p.E273*	ENST00000261769	NM_004360.3	273	Gaa/Taa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717626	89717632	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCCAG	CTGCCAG	-			P-0042711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	67	490	1	ENST00000371953.3:c.653_659del	p.Cys218Ter	p.C218*	ENST00000371953	NM_000314.4	217	gtCTGCCAG/gt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969860	81969860	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	40	758	0	ENST00000359376.3:c.2929T>C	p.Tyr977His	p.Y977H	ENST00000359376	NM_002661.3	977	Tac/Cac																																																																															
AR	367	MSKCC	GRCh37	X	66931289	66931289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	53	272	0	ENST00000374690.3:c.1931G>A	p.Gly644Glu	p.G644E	ENST00000374690	NM_000044.3	644	gGa/gAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	31	393	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RAC1	5879	MSKCC	GRCh37	7	6441613	6441613	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	75	411	0	ENST00000356142.4:c.460A>C	p.Thr154Pro	p.T154P	ENST00000356142	NM_018890.3	154	Act/Cct																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101910068	101910068	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0042743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	26	185	0	ENST00000374994.4:c.1386+2T>G		p.X462_splice	ENST00000374994	NM_004612.2	462																																																																																
TP53	7157	MSKCC	GRCh37	17	7573997	7574013	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCTCGGAACATCTCG	GCTCTCGGAACATCTCG	-			P-0042744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	197	645	0	ENST00000269305.4:c.1014_1030del	p.Met340Ter	p.M340*	ENST00000269305	NM_001126112.2	338	ttCGAGATGTTCCGAGAGCtg/tttg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905067	50905067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	168	541	0	ENST00000440232.2:c.349C>T	p.Pro117Ser	p.P117S	ENST00000440232	NM_002691.3	117	Cca/Tca																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028657	12028657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	146	376	0	ENST00000353533.5:c.860G>A	p.Arg287His	p.R287H	ENST00000353533	NM_003010.3	287	cGc/cAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115972	8115973	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	106	289	0	ENST00000346208.3:c.1320dup	p.Ala441ArgfsTer66	p.A441Rfs*66	ENST00000346208		440	acc/aCcc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0042817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	201	533	0	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
TNFAIP3	7128	MSKCC	GRCh37	6	138200419	138200419	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778025601		P-0042817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	67	700	0	ENST00000237289.4:c.1837G>A	p.Val613Met	p.V613M	ENST00000237289	NM_001270507.1	613	Gtg/Atg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870878	12870896	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGGACCACGAAGAGTTA	GGTGGACCACGAAGAGTTA	-			P-0042817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	41	303	0	ENST00000228872.4:c.105_123del	p.Val36ProfsTer29	p.V36Pfs*29	ENST00000228872	NM_004064.3	35	ccGGTGGACCACGAAGAGTTA/cc																																																																															
CBFB	865	MSKCC	GRCh37	16	67063389	67063389	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0042817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	168	452	0	ENST00000412916.2:c.78+1G>T		p.X26_splice	ENST00000412916		26																																																																																
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0042830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	155	661	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	65	360	0	ENST00000268712.3:c.1573dup	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100117	157100119	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs1450867853		P-0042830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	11	38	0	ENST00000346085.5:c.1069_1071del	p.Gly357del	p.G357del	ENST00000346085	NM_020732.3	352	GGC/-																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775638	9775638	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057524823		P-0042830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	131	706	0	ENST00000377346.4:c.181A>G	p.Met61Val	p.M61V	ENST00000377346	NM_005026.3	61	Atg/Gtg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119595259	119595267	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CCTTAGTCC	CCTTAGTCC	G			P-0042830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	29	250	0	ENST00000316626.5:c.902_909+1delinsC		p.X301_splice	ENST00000316626		301																																																																																
TP53	7157	MSKCC	GRCh37	17	7579409	7579409	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	381	1148	0	ENST00000269305.4:c.278del	p.Leu93ArgfsTer30	p.L93Rfs*30	ENST00000269305	NM_001126112.2	93	cTg/cg																																																																															
RB1	5925	MSKCC	GRCh37	13	48939109	48939109	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0042868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	121	105	0	ENST00000267163.4:c.939+2T>A		p.X313_splice	ENST00000267163	NM_000321.2	313																																																																																
RARA	5914	MSKCC	GRCh37	17	38506044	38506044	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	232	759	0	ENST00000254066.5:c.336C>G	p.Phe112Leu	p.F112L	ENST00000254066	NM_000964.3	112	ttC/ttG																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271826	15271826	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	348	1169	0	ENST00000263388.2:c.6613C>T	p.Gln2205Ter	p.Q2205*	ENST00000263388	NM_000435.2	2205	Cag/Tag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281487	15281487	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	307	918	0	ENST00000263388.2:c.4886T>G	p.Val1629Gly	p.V1629G	ENST00000263388	NM_000435.2	1629	gTg/gGg																																																																															
ALK	238	MSKCC	GRCh37	2	30143398	30143398	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs78378278		P-0042868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	189	779	0	ENST00000389048.3:c.128C>T	p.Pro43Leu	p.P43L	ENST00000389048	NM_004304.4	43	cCa/cTa																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186503772	186503772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	220	516	0	ENST00000323963.5:c.449C>T	p.Ala150Val	p.A150V	ENST00000323963		150	gCt/gTt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111737	56111737	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs931213715		P-0042868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	31	68	0	ENST00000399503.3:c.337C>T	p.Pro113Ser	p.P113S	ENST00000399503	NM_005921.1	113	Ccc/Tcc																																																																															
SYK	6850	MSKCC	GRCh37	9	93624621	93624621	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	179	638	1	ENST00000375746.1:c.712T>A	p.Trp238Arg	p.W238R	ENST00000375746	NM_001174167.1	238	Tgg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1131691025		P-0042877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	208	527	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0042877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	93	321	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs770248150		P-0042877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	337	203	0	ENST00000256078.4:c.351A>C	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaC																																																																															
TSC2	7249	MSKCC	GRCh37	16	2120460	2120460	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	170	600	1	ENST00000219476.3:c.1721del	p.Lys574SerfsTer124	p.K574Sfs*124	ENST00000219476	NM_000548.3	574	Aag/ag																																																																															
ATR	545	MSKCC	GRCh37	3	142272843	142272843	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	91	129	0	ENST00000350721.4:c.2356C>A	p.Leu786Ile	p.L786I	ENST00000350721	NM_001184.3	786	Cta/Ata																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672006	30672006	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	244	764	0	ENST00000376406.3:c.4954C>A	p.Pro1652Thr	p.P1652T	ENST00000376406	NM_014641.2	1652	Cca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	151	333	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0042914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	405	500	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0042957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	72	607	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519912		P-0042957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	77	357	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106898	27106898	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	59	635	0	ENST00000324856.7:c.6509T>G	p.Leu2170Arg	p.L2170R	ENST00000324856	NM_006015.4	2170	cTg/cGg																																																																															
ALK	238	MSKCC	GRCh37	2	29551215	29551215	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs777414641		P-0042957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	50	526	4	ENST00000389048.3:c.1414+1G>A		p.X472_splice	ENST00000389048	NM_004304.4	472																																																																																
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs587780073		P-0042958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	36	589	0	ENST00000269305.4:c.701A>C	p.Tyr234Ser	p.Y234S	ENST00000269305	NM_001126112.2	234	tAc/tCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0042969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	41	730	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120510107	120510107	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	116	481	1	ENST00000256646.2:c.1402G>T	p.Asp468Tyr	p.D468Y	ENST00000256646	NM_024408.3	468	Gat/Tat																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120510170	120510170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1142	136	533	2	ENST00000256646.2:c.1339G>T	p.Gly447Cys	p.G447C	ENST00000256646	NM_024408.3	447	Ggt/Tgt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120510724	120510724	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	118	601	0	ENST00000256646.2:c.1240G>T	p.Glu414Ter	p.E414*	ENST00000256646	NM_024408.3	414	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0042989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	20	455	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	165	372	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0043092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	383	667	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0043092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	214	352	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31472258	31472258	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	271	546	0	ENST00000344624.3:c.2153A>C	p.Glu718Ala	p.E718A	ENST00000344624		718	gAg/gCg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44966783	44966783	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0043092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	233	520	0	ENST00000377967.4:c.4005+2T>G		p.X1335_splice	ENST00000377967	NM_021140.2	1335																																																																																
TP53	7157	MSKCC	GRCh37	17	7577594	7577594	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0043098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	95	497	0	ENST00000269305.4:c.687T>A	p.Cys229Ter	p.C229*	ENST00000269305	NM_001126112.2	229	tgT/tgA																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868140	45868140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	227	1324	1	ENST00000391945.4:c.550G>T	p.Gly184Trp	p.G184W	ENST00000391945	NM_000400.3	184	Ggg/Tgg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007353	143007353	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	87	306	0	ENST00000262992.4:c.2431C>T	p.Gln811Ter	p.Q811*	ENST00000262992	NM_001101669.1	811	Caa/Taa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47699426	47699426	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0043098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	52	274	0	ENST00000347630.2:c.82A>T	p.Lys28Ter	p.K28*	ENST00000347630	NM_001007230.1	28	Aag/Tag																																																																															
PARP1	142	MSKCC	GRCh37	1	226567643	226567643	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	101	495	0	ENST00000366794.5:c.1523A>G	p.Lys508Arg	p.K508R	ENST00000366794	NM_001618.3	508	aAg/aGg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88690632	88690632	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0043098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	105	361	1	ENST00000360948.2:c.398A>T	p.Asn133Ile	p.N133I	ENST00000360948	NM_001012338.2	133	aAc/aTc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679950	30680001	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGCTGTTAGGGAGGTGCCCTCCTCTGCATCTGTTTCACAGTCCCCATGCA	GAGGCTGTTAGGGAGGTGCCCTCCTCTGCATCTGTTTCACAGTCCCCATGCA	-			P-0043098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	98	436	0	ENST00000376406.3:c.1718_1769del	p.Leu573GlnfsTer2	p.L573Qfs*2	ENST00000376406	NM_014641.2	573	cTGCATGGGGACTGTGAAACAGATGCAGAGGAGGGCACCTCCCTAACAGCCTCa/ca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0043147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	151	521	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0043147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	43	579	2	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782329		P-0043147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	31	607	0	ENST00000269305.4:c.746G>A	p.Arg249Lys	p.R249K	ENST00000269305	NM_001126112.2	249	aGg/aAg																																																																															
CDH1	999	MSKCC	GRCh37	16	68847305	68847305	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	167	537	0	ENST00000261769.5:c.1227G>A	p.Trp409Ter	p.W409*	ENST00000261769	NM_004360.3	409	tgG/tgA																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515435	103515435	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748923127		P-0043147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	33	260	0	ENST00000355739.4:c.1936G>A	p.Glu646Lys	p.E646K	ENST00000355739	NM_000123.3	646	Gaa/Aaa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712533	43712533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	26	647	4	ENST00000382044.4:c.4651G>A	p.Ala1551Thr	p.A1551T	ENST00000382044	NM_001141980.1	1551	Gcc/Acc																																																																															
CBFB	865	MSKCC	GRCh37	16	67132612	67132612	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0043147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	30	395	0	ENST00000412916.2:c.496-1G>A		p.X166_splice	ENST00000412916		166																																																																																
AKT2	208	MSKCC	GRCh37	19	40741008	40741008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	144	812	0	ENST00000392038.2:c.1310G>A	p.Arg437Lys	p.R437K	ENST00000392038	NM_001626.4	437	aGg/aAg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0043246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	189	545	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285231	212285231	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	128	468	0	ENST00000342788.4:c.3070G>T	p.Val1024Phe	p.V1024F	ENST00000342788	NM_005235.2	1024	Gtc/Ttc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244148	153244148	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	142	428	0	ENST00000281708.4:c.2009G>T	p.Gly670Val	p.G670V	ENST00000281708	NM_033632.3	670	gGa/gTa																																																																															
APC	324	MSKCC	GRCh37	5	112175909	112175909	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	65	234	0	ENST00000257430.4:c.4618G>T	p.Glu1540Ter	p.E1540*	ENST00000257430	NM_000038.5	1540	Gag/Tag																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0043318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	245	587	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0043318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	327	687	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520009		P-0043318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	240	564	1	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8317878	8317878	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151311972		P-0043318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	240	591	0	ENST00000356435.5:c.5735C>T	p.Thr1912Met	p.T1912M	ENST00000356435		1912	aCg/aTg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429977	78429978	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1200882279		P-0043318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	212	419	0	ENST00000370768.2:c.901dup	p.Ile301AsnfsTer4	p.I301Nfs*4	ENST00000370768	NM_003902.3	301	ata/aAta																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096916	11096916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs535299273		P-0043318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	306	1124	0	ENST00000344626.4:c.407C>T	p.Ala136Val	p.A136V	ENST00000344626	NM_003072.3	136	gCc/gTc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115982	8115983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	147	490	0	ENST00000346208.3:c.1330dup	p.Ter444LeufsTer63	p.*444Lfs*63	ENST00000346208		443	ggt/ggTt																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40456416	40456416	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143067673		P-0043318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	285	864	2	ENST00000345506.4:c.1226C>T	p.Thr409Met	p.T409M	ENST00000345506	NM_003152.3	409	aCg/aTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256950	16256950	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	164	780	3	ENST00000375759.3:c.4220del	p.Leu1407TyrfsTer2	p.L1407Yfs*2	ENST00000375759	NM_015001.2	1405	tcT/tc																																																																															
ALK	238	MSKCC	GRCh37	2	29448419	29448419	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140733978		P-0043318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	381	1143	0	ENST00000389048.3:c.3080C>T	p.Pro1027Leu	p.P1027L	ENST00000389048	NM_004304.4	1027	cCg/cTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0043318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	369	697	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
INHA	3623	MSKCC	GRCh37	2	220439887	220439887	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751673614		P-0043318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	178	917	1	ENST00000243786.2:c.740G>A	p.Arg247His	p.R247H	ENST00000243786	NM_002191.3	247	cGc/cAc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128028933	128028933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	266	693	0	ENST00000285398.2:c.1924C>T	p.Arg642Trp	p.R642W	ENST00000285398	NM_000122.1	642	Cgg/Tgg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42843792	42843792	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1242962903		P-0043318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	158	690	0	ENST00000398585.3:c.1127C>T	p.Ser376Phe	p.S376F	ENST00000398585	NM_001135099.1	376	tCc/tTc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120484360	120484360	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	108	496	0	ENST00000256646.2:c.2770G>T	p.Gly924Cys	p.G924C	ENST00000256646	NM_024408.3	924	Ggt/Tgt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243675707	243675707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	34	239	0	ENST00000263826.5:c.1273C>A	p.Gln425Lys	p.Q425K	ENST00000263826	NM_005465.4	425	Caa/Aaa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942584	71942584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	186	809	1	ENST00000298229.2:c.1540G>A	p.Val514Ile	p.V514I	ENST00000298229	NM_001567.3	514	Gtc/Atc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220083	5220083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	43	866	1	ENST00000357368.4:c.3632C>T	p.Ala1211Val	p.A1211V	ENST00000357368	NM_002850.3	1211	gCt/gTt																																																																															
CARM1	10498	MSKCC	GRCh37	19	11032105	11032105	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1404227792		P-0043318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	292	932	1	ENST00000327064.4:c.1670C>T	p.Thr557Met	p.T557M	ENST00000327064	NM_199141.1	557	aCg/aTg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753188	42753188	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780415692		P-0043318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	565	998	0	ENST00000222329.4:c.1076C>T	p.Pro359Leu	p.P359L	ENST00000222329	NM_006494.2	359	cCg/cTg																																																																															
BBC3	27113	MSKCC	GRCh37	19	47724983	47724983	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750787778		P-0043318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	543	985	3	ENST00000449228.1:c.761C>T	p.Ala254Val	p.A254V	ENST00000449228	NM_001127240.2	254	gCg/gTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971057	21971057	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894094		P-0043318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	149	562	1	ENST00000304494.5:c.301G>A	p.Gly101Arg	p.G101R	ENST00000304494	NM_000077.4	101	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0043323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	519	1026	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061412	38061412	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1310740071		P-0043323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	431	702	0	ENST00000250448.2:c.577C>G	p.Leu193Val	p.L193V	ENST00000250448	NM_004496.3	193	Ctg/Gtg																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246021919	246021919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763591857		P-0043323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	197	949	0	ENST00000388985.4:c.955C>T	p.Arg319Trp	p.R319W	ENST00000388985		319	Cgg/Tgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991666	72991666	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	290	604	1	ENST00000268489.5:c.2379del	p.Ser794ArgfsTer30	p.S794Rfs*30	ENST00000268489	NM_006885.3	793	ccC/cc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673104	30673104	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	423	769	0	ENST00000376406.3:c.3856C>G	p.Pro1286Ala	p.P1286A	ENST00000376406	NM_014641.2	1286	Ccc/Gcc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273266	55273266	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1431	187	797	0	ENST00000275493.2:c.3589T>G	p.Tyr1197Asp	p.Y1197D	ENST00000275493	NM_005228.3	1197	Tac/Gac																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982420	201982420	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0043351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	298	775	0	ENST00000359651.3:c.799A>T	p.Lys267Ter	p.K267*	ENST00000359651		267	Aag/Tag																																																																															
LATS2	26524	MSKCC	GRCh37	13	21619864	21619864	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1235573411		P-0043351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1229	91	494	1	ENST00000382592.4:c.302G>A	p.Arg101Gln	p.R101Q	ENST00000382592	NM_014572.2	101	cGg/cAg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662047	227662047	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1301402217		P-0043351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	223	676	0	ENST00000305123.5:c.1408G>A	p.Gly470Ser	p.G470S	ENST00000305123	NM_005544.2	470	Ggc/Agc																																																																															
EP300	2033	MSKCC	GRCh37	22	41537145	41537145	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs973317775		P-0043351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	561	506	0	ENST00000263253.7:c.1972C>G	p.Leu658Val	p.L658V	ENST00000263253	NM_001429.3	658	Cta/Gta																																																																															
BCL6	604	MSKCC	GRCh37	3	187444528	187444528	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1438511659		P-0043351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	490	649	1	ENST00000232014.4:c.1699G>A	p.Val567Ile	p.V567I	ENST00000232014	NM_001130845.1	567	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112176018	112176018	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	265	380	0	ENST00000257430.4:c.4728del	p.Glu1577AsnfsTer73	p.E1577Nfs*73	ENST00000257430	NM_000038.5	1576	gAa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0043352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	27	638	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs768922431		P-0043352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	45	462	0	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022935	31022935	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	50	558	0	ENST00000375687.4:c.2421del	p.Pro808LeufsTer10	p.P808Lfs*10	ENST00000375687	NM_015338.5	807	gTt/gt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0043404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	28	364	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579861	7579861	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs876658627		P-0043404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	98	657	0	ENST00000269305.4:c.52del	p.Thr18HisfsTer26	p.T18Hfs*26	ENST00000269305	NM_001126112.2	18	Aca/ca																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288969	212288969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148791072		P-0043404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	38	454	0	ENST00000342788.4:c.2777C>T	p.Thr926Met	p.T926M	ENST00000342788	NM_005235.2	926	aCg/aTg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133523	55133523	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142492533		P-0043404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	67	488	1	ENST00000257290.5:c.827C>T	p.Thr276Met	p.T276M	ENST00000257290	NM_006206.4	276	aCg/aTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717777	89717777	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs786204873		P-0043404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	28	252	0	ENST00000371953.3:c.801+1G>A		p.X267_splice	ENST00000371953	NM_000314.4	267																																																																																
MTOR	2475	MSKCC	GRCh37	1	11188964	11188964	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753081675		P-0043404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	71	488	0	ENST00000361445.4:c.5759A>G	p.Asn1920Ser	p.N1920S	ENST00000361445	NM_004958.3	1920	aAt/aGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	152	363	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631837	90631837	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	166	499	0	ENST00000330062.3:c.516G>T	p.Arg172Ser	p.R172S	ENST00000330062	NM_002168.2	172	agG/agT																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464434	120464434	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0043410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	71	301	0	ENST00000256646.2:c.5214-2A>G		p.X1738_splice	ENST00000256646	NM_024408.3	1738																																																																																
PTEN	5728	MSKCC	GRCh37	10	89692833	89692833	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	31	196	0	ENST00000371953.3:c.317A>G	p.Glu106Gly	p.E106G	ENST00000371953	NM_000314.4	106	gAa/gGa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610028	81610028	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	177	334	0	ENST00000298171.2:c.1626G>C	p.Met542Ile	p.M542I	ENST00000298171	NM_000369.2	542	atG/atC																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275742	41275742	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	140	475	0	ENST00000349496.5:c.1637A>G	p.Asp546Gly	p.D546G	ENST00000349496	NM_001904.3	546	gAt/gGt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468294	50468294	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs971487743		P-0043410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	120	551	1	ENST00000331340.3:c.1529C>T	p.Thr510Met	p.T510M	ENST00000331340	NM_006060.4	510	aCg/aTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039350	47039351	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0043410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	350	692	0	ENST00000329236.7:c.743_744del	p.Val248AlafsTer54	p.V248Afs*54	ENST00000329236	NM_001204466.1	248	GTg/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0043425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	286	666	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458223	12458223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	76	441	0	ENST00000287820.6:c.840G>A	p.Met280Ile	p.M280I	ENST00000287820	NM_015869.4	280	atG/atA																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120512359	120512359	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	81	395	0	ENST00000256646.2:c.883T>G	p.Cys295Gly	p.C295G	ENST00000256646	NM_024408.3	295	Tgc/Ggc																																																																															
APC	324	MSKCC	GRCh37	5	112157616	112157617	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCTG			P-0043425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	18	365	0	ENST00000257430.4:c.1339_1342dup	p.Pro448LeufsTer13	p.P448Lfs*13	ENST00000257430	NM_000038.5	446	atc/aTCTGtc																																																																															
APC	324	MSKCC	GRCh37	5	112176647	112176821	+	frameshift_variant	Frame_Shift_Del	DEL	AGGACACGTGTAAGAAAAAATGCAGACTCAAAAAATAATTTAAATGCTGAGAGAGTTTTCTCAGACAACAAAGATTCAAAGAAACAGAATTTGAAAAATAATTCCAAGGTCTTCAATGATAAGCTCCCAAATAATGAAGATAGAGTCAGAGGAAGTTTTGCTTTTGATTCACCTC	AGGACACGTGTAAGAAAAAATGCAGACTCAAAAAATAATTTAAATGCTGAGAGAGTTTTCTCAGACAACAAAGATTCAAAGAAACAGAATTTGAAAAATAATTCCAAGGTCTTCAATGATAAGCTCCCAAATAATGAAGATAGAGTCAGAGGAAGTTTTGCTTTTGATTCACCTC	-			P-0043425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	60	271	0	ENST00000257430.4:c.5357_5531del	p.Arg1786IlefsTer19	p.R1786Ifs*19	ENST00000257430	NM_000038.5	1786	AGGACACGTGTAAGAAAAAATGCAGACTCAAAAAATAATTTAAATGCTGAGAGAGTTTTCTCAGACAACAAAGATTCAAAGAAACAGAATTTGAAAAATAATTCCAAGGTCTTCAATGATAAGCTCCCAAATAATGAAGATAGAGTCAGAGGAAGTTTTGCTTTTGATTCACCTCat/at																																																																															
MTOR	2475	MSKCC	GRCh37	1	11181408	11181410	+	missense_variant	Missense_Mutation	ONP	GTC	GTC	ATA			P-0043425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	108	637	0	ENST00000361445.4:c.6826_6828delinsTAT	p.Asp2276Tyr	p.D2276Y	ENST00000361445	NM_004958.3	2276	GAC/TAT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131691026		P-0043515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	298	740	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0043515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	211	275	1	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984374	201984377	+	frameshift_variant	Frame_Shift_Del	DEL	GGCC	GGCC	-			P-0043515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	266	599	0	ENST00000359651.3:c.1042_1045del	p.Arg348AspfsTer98	p.R348Dfs*98	ENST00000359651		347	GGCCgg/gg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77051695	77051695	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145870074		P-0043515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	173	396	2	ENST00000356341.3:c.1112G>A	p.Arg371His	p.R371H	ENST00000356341	NM_002576.4	371	cGt/cAt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	58	305	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339111	65339111	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	87	408	7	ENST00000342505.4:c.425del	p.Lys142ArgfsTer26	p.K142Rfs*26	ENST00000342505	NM_002227.2	142	aAg/ag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	117	502	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs758630849		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	110	377	2	ENST00000305921.3:c.1349del	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612209	1612209	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs915880927		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	74	384	0	ENST00000344749.5:c.1810C>T	p.Arg604Ter	p.R604*	ENST00000344749	NM_001136139.2	604	Cga/Tga																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245720	46245720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	94	381	0	ENST00000334344.6:c.3814C>T	p.Arg1272Ter	p.R1272*	ENST00000334344	NM_152641.2	1272	Cga/Tga																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508835	106508835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	94	442	0	ENST00000359195.3:c.829C>T	p.Arg277Trp	p.R277W	ENST00000359195	NM_002649.2	277	Cgg/Tgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991949	72991949	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs757302188		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	96	522	3	ENST00000268489.5:c.2096del	p.Gly699AlafsTer125	p.G699Afs*125	ENST00000268489	NM_006885.3	699	gGc/gc																																																																															
AXL	558	MSKCC	GRCh37	19	41749573	41749573	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144824336		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	149	574	0	ENST00000301178.4:c.1498G>A	p.Val500Met	p.V500M	ENST00000301178	NM_021913.4	500	Gtg/Atg																																																																															
LATS1	9113	MSKCC	GRCh37	6	149982977	149982977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	47	396	0	ENST00000253339.5:c.3281C>T	p.Pro1094Leu	p.P1094L	ENST00000253339		1094	cCg/cTg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519971		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	91	423	0	ENST00000347630.2:c.260A>C	p.Tyr87Ser	p.Y87S	ENST00000347630	NM_001007230.1	87	tAc/tCc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106333	27106333	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201604768		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	147	509	0	ENST00000324856.7:c.5944G>A	p.Val1982Ile	p.V1982I	ENST00000324856	NM_006015.4	1982	Gtc/Atc																																																																															
WT1	7490	MSKCC	GRCh37	11	32449577	32449577	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1060501253		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	147	586	3	ENST00000332351.3:c.797del	p.Pro266ArgfsTer20	p.P266Rfs*20	ENST00000332351	NM_024426.4	266	cCg/cg																																																																															
BTK	695	MSKCC	GRCh37	X	100630173	100630173	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141488935		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	93	213	1	ENST00000308731.7:c.100G>A	p.Val34Met	p.V34M	ENST00000308731	NM_000061.2	34	Gtg/Atg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78914339	78914339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147686617		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	152	564	0	ENST00000306801.3:c.2963G>A	p.Arg988Gln	p.R988Q	ENST00000306801	NM_020761.2	988	cGg/cAg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655248	45655248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs533193731		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	137	565	0	ENST00000407780.3:c.604G>A	p.Val202Met	p.V202M	ENST00000407780	NM_001283052.1	202	Gtg/Atg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572041	64572041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	153	583	0	ENST00000337652.1:c.1613G>A	p.Ser538Asn	p.S538N	ENST00000337652	NM_130803.2	538	aGc/aAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49439750	49439750	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs200119692		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	119	473	0	ENST00000301067.7:c.4694C>T	p.Ala1565Val	p.A1565V	ENST00000301067	NM_003482.3	1565	gCg/gTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101967	11101967	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779161503		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	145	576	1	ENST00000344626.4:c.1387G>A	p.Glu463Lys	p.E463K	ENST00000344626	NM_003072.3	463	Gag/Aag																																																																															
TET2	54790	MSKCC	GRCh37	4	106155594	106155594	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	84	322	0	ENST00000380013.4:c.499del	p.Ser167GlnfsTer16	p.S167Qfs*16	ENST00000380013	NM_001127208.2	165	agT/ag																																																																															
MSH3	4437	MSKCC	GRCh37	5	79961007	79961007	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	82	426	0	ENST00000265081.6:c.408del	p.Lys136AsnfsTer2	p.K136Nfs*2	ENST00000265081	NM_002439.4	135	gAa/ga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480411	89480411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	87	271	0	ENST00000336596.2:c.2248C>T	p.Arg750Trp	p.R750W	ENST00000336596	NM_005233.5	750	Cgg/Tgg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023445	31023445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	88	426	0	ENST00000375687.4:c.2930A>C	p.Gln977Pro	p.Q977P	ENST00000375687	NM_015338.5	977	cAg/cCg																																																																															
ATRX	546	MSKCC	GRCh37	X	76829787	76829787	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057517948		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	40	234	0	ENST00000373344.5:c.6254G>A	p.Arg2085His	p.R2085H	ENST00000373344	NM_000489.3	2085	cGt/cAt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88672089	88672089	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	64	218	0	ENST00000372037.3:c.623A>T	p.Asp208Val	p.D208V	ENST00000372037	NM_004329.2	208	gAc/gTc																																																																															
WT1	7490	MSKCC	GRCh37	11	32413587	32413587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	82	355	0	ENST00000332351.3:c.1363del	p.Thr455LeufsTer12	p.T455Lfs*12	ENST00000332351	NM_024426.4	455	Act/ct																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129428	64129428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	128	564	0	ENST00000334205.4:c.860C>A	p.Ala287Glu	p.A287E	ENST00000334205	NM_003942.2	287	gCg/gAg																																																																															
YAP1	10413	MSKCC	GRCh37	11	102098217	102098217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	94	370	0	ENST00000282441.5:c.1181G>A	p.Arg394Gln	p.R394Q	ENST00000282441	NM_001130145.2	394	cGa/cAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445949	49445949	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	193	818	1	ENST00000301067.7:c.1517del	p.Pro506HisfsTer424	p.P506Hfs*424	ENST00000301067	NM_003482.3	506	cCa/ca																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489093	56489093	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1200363001		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	42	441	0	ENST00000267101.3:c.1912G>A	p.Gly638Ser	p.G638S	ENST00000267101	NM_001982.3	638	Ggc/Agc																																																																															
POLE	5426	MSKCC	GRCh37	12	133250262	133250262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	117	507	1	ENST00000320574.5:c.1258G>T	p.Gly420Cys	p.G420C	ENST00000320574	NM_006231.2	420	Ggc/Tgc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121876	2121876	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876658578		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	130	588	1	ENST00000219476.3:c.2038C>T	p.Arg680Trp	p.R680W	ENST00000219476	NM_000548.3	680	Cgg/Tgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827670	72827670	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	123	491	0	ENST00000268489.5:c.8911C>G	p.Pro2971Ala	p.P2971A	ENST00000268489	NM_006885.3	2971	Ccc/Gcc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244170	5244170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	151	655	0	ENST00000357368.4:c.1312C>T	p.Leu438Phe	p.L438F	ENST00000357368	NM_002850.3	438	Ctc/Ttc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10283821	10283821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	100	414	0	ENST00000340748.4:c.665C>A	p.Pro222His	p.P222H	ENST00000340748		222	cCt/cAt																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19258538	19258538	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	143	652	0	ENST00000162023.5:c.362del	p.Gly121ValfsTer102	p.G121Vfs*102	ENST00000162023		121	gGt/gt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47635617	47635617	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63750970		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	99	438	0	ENST00000233146.2:c.289C>T	p.Gln97Ter	p.Q97*	ENST00000233146	NM_000251.2	97	Cag/Tag																																																																															
CASP8	841	MSKCC	GRCh37	2	202141668	202141668	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	60	354	1	ENST00000358485.4:c.956G>T	p.Arg319Met	p.R319M	ENST00000358485	NM_001080125.1	319	aGg/aTg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866343	42866343	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1266959483		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	142	591	0	ENST00000398585.3:c.289G>A	p.Ala97Thr	p.A97T	ENST00000398585	NM_001135099.1	97	Gct/Act																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38967304	38967304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	67	236	1	ENST00000357387.3:c.1177G>T	p.Ala393Ser	p.A393S	ENST00000357387	NM_152756.3	393	Gca/Tca																																																																															
NSD1	64324	MSKCC	GRCh37	5	176720871	176720871	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1260544167		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	96	438	0	ENST00000439151.2:c.6502G>A	p.Gly2168Arg	p.G2168R	ENST00000439151	NM_022455.4	2168	Ggg/Agg																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839783	27839783	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	118	448	0	ENST00000328488.2:c.311T>C	p.Leu104Pro	p.L104P	ENST00000328488	NM_003533.2	104	cTa/cCa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68930109	68930109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	131	367	0	ENST00000288368.4:c.170C>T	p.Ala57Val	p.A57V	ENST00000288368	NM_024870.2	57	gCa/gTa																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248069	110248069	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867964623		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	37	405	0	ENST00000374672.4:c.1403C>T	p.Ser468Leu	p.S468L	ENST00000374672	NM_004235.4	468	tCg/tTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399469	139399469	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	175	617	0	ENST00000277541.6:c.4674del	p.Leu1559TrpfsTer21	p.L1559Wfs*21	ENST00000277541	NM_017617.3	1558	ggG/gg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411846	63411846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	202	370	0	ENST00000330258.3:c.1321C>T	p.Pro441Ser	p.P441S	ENST00000330258	NM_152424.3	441	Cca/Tca																																																																															
MED12	9968	MSKCC	GRCh37	X	70344033	70344033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	123	307	0	ENST00000374080.3:c.1769G>A	p.Arg590Gln	p.R590Q	ENST00000374080		590	cGg/cAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76777854	76777854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782342279		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	63	216	2	ENST00000373344.5:c.6862C>T	p.Arg2288Cys	p.R2288C	ENST00000373344	NM_000489.3	2288	Cgt/Tgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0043588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	25	264	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0043588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	238	696	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65307188	65307188	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	86	585	1	ENST00000342505.4:c.2500C>T	p.Gln834Ter	p.Q834*	ENST00000342505	NM_002227.2	834	Cag/Tag																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029303	14029303	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	68	424	0	ENST00000311895.7:c.1515del	p.Glu506ArgfsTer13	p.E506Rfs*13	ENST00000311895	NM_005236.2	505	gAa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	142	345	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299048	15299048	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs114207045		P-0043660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	37	564	1	ENST00000263388.2:c.1490C>T	p.Ser497Leu	p.S497L	ENST00000263388	NM_000435.2	497	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	246	704	0	ENST00000269305.4:c.659del	p.Tyr220LeufsTer27	p.Y220Lfs*27	ENST00000269305	NM_001126112.2	220	tAt/tt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971163	21971185	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCAGCAGCAGCTCCGCCACTC	GAGCAGCAGCAGCTCCGCCACTC	-			P-0043660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	33	378	0	ENST00000304494.5:c.173_195del	p.Arg58ProfsTer54	p.R58Pfs*54	ENST00000304494	NM_000077.4	58	cGAGTGGCGGAGCTGCTGCTGCTC/c																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845412	42845412	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	34	794	0	ENST00000398585.3:c.850A>C	p.Asn284His	p.N284H	ENST00000398585	NM_001135099.1	284	Aac/Cac																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66519927	66519927	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	44	338	0	ENST00000358598.2:c.410T>A	p.Leu137Gln	p.L137Q	ENST00000358598	NM_212471.2	137	cTg/cAg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061261	38061261	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	255	418	0	ENST00000250448.2:c.728A>G	p.Tyr243Cys	p.Y243C	ENST00000250448	NM_004496.3	243	tAc/tGc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644855	67644856	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCC			P-0043686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	119	334	0	ENST00000264010.4:c.122_124dup	p.Pro41dup	p.P41dup	ENST00000264010	NM_006565.3	41	-/CCC																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688642	47688642	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	84	160	0	ENST00000347630.2:c.658G>A	p.Ala220Thr	p.A220T	ENST00000347630	NM_001007230.1	220	Gct/Act																																																																															
RAD21	5885	MSKCC	GRCh37	8	117866551	117866554	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0043828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	23	371	0	ENST00000297338.2:c.1091_1094del	p.Lys364ArgfsTer5	p.K364Rfs*5	ENST00000297338	NM_006265.2	364	aAAGAg/ag																																																																															
TSC1	7248	MSKCC	GRCh37	9	135776169	135776226	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AACAGCTGCCTGTTCAAGAACTCCATCTGCTGCTGGACCGACTCACTGTTTGAGAGCT	AACAGCTGCCTGTTCAAGAACTCCATCTGCTGCTGGACCGACTCACTGTTTGAGAGCT	-			P-0043828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	51	419	0	ENST00000298552.3:c.2503-2_2558del		p.X835_splice	ENST00000298552	NM_001162426.1	835																																																																																
TP53	7157	MSKCC	GRCh37	17	7577545	7577546	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	C			P-0043828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	117	522	0	ENST00000269305.4:c.735_736delinsG	p.Met246Ter	p.M246*	ENST00000269305	NM_001126112.2	245	ggCAtg/ggGtg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0043836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	30	460	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865456	57865456	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	165	914	0	ENST00000228682.2:c.2933C>A	p.Ala978Glu	p.A978E	ENST00000228682	NM_005269.2	978	gCa/gAa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438215	56438239	+	frameshift_variant	Frame_Shift_Del	DEL	GCCACTCACCCCGGGCCTGCCTGCA	GCCACTCACCCCGGGCCTGCCTGCA	-			P-0043836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	135	859	0	ENST00000407977.2:c.754_778del	p.Cys252GlnfsTer159	p.C252Qfs*159	ENST00000407977		252	TGCAGGCAGGCCCGGGGTGAGTGGCca/ca																																																																															
ATM	472	MSKCC	GRCh37	11	108201129	108201135	+	protein_altering_variant	In_Frame_Del	DEL	AAGTCAA	AAGTCAA	C			P-0043836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	40	384	0	ENST00000278616.4:c.7496_7502delinsC	p.Glu2499_Asn2501delinsAla	p.E2499_N2501delinsA	ENST00000278616	NM_000051.3	2499	gAAGTCAAt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	245	671	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	5485	584	59	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	59	385	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	137	385	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144118	11144118	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	243	806	0	ENST00000344626.4:c.3699G>T	p.Met1233Ile	p.M1233I	ENST00000344626	NM_003072.3	1233	atG/atT																																																																															
APC	324	MSKCC	GRCh37	5	112175531	112175532	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	122	326	0	ENST00000257430.4:c.4241dup	p.Ser1415LysfsTer8	p.S1415Kfs*8	ENST00000257430	NM_000038.5	1414	gta/gTta																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874636	35874637	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1384901919		P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	137	299	0	ENST00000303115.3:c.799dup	p.Arg267LysfsTer3	p.R267Kfs*3	ENST00000303115	NM_002185.3	264	-/A																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711367	114711367	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	91	192	1	ENST00000543371.1:c.381+1G>C		p.X127_splice	ENST00000543371	NM_001198531.1	127																																																																																
ATM	472	MSKCC	GRCh37	11	108139211	108139214	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-			P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	139	599	0	ENST00000278616.4:c.2716_2719del	p.Leu906ValfsTer2	p.L906Vfs*2	ENST00000278616	NM_000051.3	905	TGTTtg/tg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115111574	115112303	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAAGTCACTCAACATCTCTGGGCGTCTTCGCCTTCATCTGTAAAGTGGAGGTGATAATAGTACCCCTGAAGGGTTAGGTCAAATGAGTCAATACAGAGCAAGCACTTAGAAGAATGCCTGAAAGTAAGTGCTGTGTCCAGCTGTTATCTTTGTTACTACCTATCTACTCTGCTGGAAACAGCCTTTAACTTCGGAAAAATTTTAAAGATTTTTGGGGTGAATGGGGAGAATGAAGTCATAATAACTCCATGAGCTAAGCCTTGAACCCGGTAATGGCTCAGTAAAAATTATTACAGCTACTAGGCCAAAGGGATCGGGTGAGGGTCTGCTGGCAAAGGACAGGGAAACTGGACGAAAGGTGGAAAGACTGGTGGAGGCAGGAAGAAGGATCCATACCTGAGAGGCCAGGACGTGCTGCTGGAGGTGGAAGGGCAGGGTGGCCGCGGACGCCCCGGACAGTCCCTGCGCCGCAGCGGCAGAGGCCATGGCCGTGGAATCCAGGCCCGAGACACCGGTGGAGGCCCCAGAAACCGTGGCCAGGAGGGGACCCATGCCAGCGGCCGCCATGCTGGAGAAGGCGCCCCCCATGGCAAACTGGCTGGGGTGCAGGAAGAGCGGGTGCCCGTTGAAGAACTGTTGGCCCGCCAGGCCCGGGGCGAAGCCGAGGCCAGGCAGGGGGCCCTGGGCCAGGTGCGCGGCGGCCGCGTCCGTCTGCACCGTGAGCGGCGCG	CAAGTCACTCAACATCTCTGGGCGTCTTCGCCTTCATCTGTAAAGTGGAGGTGATAATAGTACCCCTGAAGGGTTAGGTCAAATGAGTCAATACAGAGCAAGCACTTAGAAGAATGCCTGAAAGTAAGTGCTGTGTCCAGCTGTTATCTTTGTTACTACCTATCTACTCTGCTGGAAACAGCCTTTAACTTCGGAAAAATTTTAAAGATTTTTGGGGTGAATGGGGAGAATGAAGTCATAATAACTCCATGAGCTAAGCCTTGAACCCGGTAATGGCTCAGTAAAAATTATTACAGCTACTAGGCCAAAGGGATCGGGTGAGGGTCTGCTGGCAAAGGACAGGGAAACTGGACGAAAGGTGGAAAGACTGGTGGAGGCAGGAAGAAGGATCCATACCTGAGAGGCCAGGACGTGCTGCTGGAGGTGGAAGGGCAGGGTGGCCGCGGACGCCCCGGACAGTCCCTGCGCCGCAGCGGCAGAGGCCATGGCCGTGGAATCCAGGCCCGAGACACCGGTGGAGGCCCCAGAAACCGTGGCCAGGAGGGGACCCATGCCAGCGGCCGCCATGCTGGAGAAGGCGCCCCCCATGGCAAACTGGCTGGGGTGCAGGAAGAGCGGGTGCCCGTTGAAGAACTGTTGGCCCGCCAGGCCCGGGGCGAAGCCGAGGCCAGGCAGGGGGCCCTGGGCCAGGTGCGCGGCGGCCGCGTCCGTCTGCACCGTGAGCGGCGCG	-			P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2	27	3	0	ENST00000257566.3:c.1437_1770+396del		p.X479_splice	ENST00000257566	NM_016569.3	479																																																																																
LATS2	26524	MSKCC	GRCh37	13	21555725	21555725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778450722		P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1447	79	711	0	ENST00000382592.4:c.2545C>T	p.Arg849Trp	p.R849W	ENST00000382592	NM_014572.2	849	Cgg/Tgg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986961	36986961	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057524869		P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	99	538	0	ENST00000354822.5:c.728G>A	p.Arg243His	p.R243H	ENST00000354822	NM_001079668.2	243	cGc/cAc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67646018	67646018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	62	428	2	ENST00000264010.4:c.946C>T	p.His316Tyr	p.H316Y	ENST00000264010	NM_006565.3	316	Cac/Tac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219050	36219050	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1459799356		P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	95	786	2	ENST00000222270.7:c.4549C>T	p.Arg1517Ter	p.R1517*	ENST00000222270	NM_014727.1	1517	Cga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467950	66467950	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	144	290	2	ENST00000273854.3:c.319C>A	p.Gln107Lys	p.Q107K	ENST00000273854	NM_004439.5	107	Cag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295245	1295247	+	upstream_gene_variant	5'Flank	DEL	CCC	CCC	-			P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	128	180	1				ENST00000310581	NM_198253.2																																																																																	
IL7R	3575	MSKCC	GRCh37	5	35876465	35876465	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	261	574	2	ENST00000303115.3:c.1257T>G	p.Phe419Leu	p.F419L	ENST00000303115	NM_002185.3	419	ttT/ttG																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727483	66727483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs727504317		P-0044058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	168	420	1	ENST00000307102.5:c.199G>A	p.Asp67Asn	p.D67N	ENST00000307102	NM_002755.3	67	Gac/Aac																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245115	46245116	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	142	424	0	ENST00000334344.6:c.3211dup	p.Ser1071PhefsTer6	p.S1071Ffs*6	ENST00000334344	NM_152641.2	1070	cct/ccTt																																																																															
AXL	558	MSKCC	GRCh37	19	41754686	41754686	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1338560133		P-0044058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	78	608	0	ENST00000301178.4:c.1672G>A	p.Asp558Asn	p.D558N	ENST00000301178	NM_021913.4	558	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0044103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	536	738	2	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0044103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	190	322	0	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
APC	324	MSKCC	GRCh37	5	112173374	112173374	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	55	296	0	ENST00000257430.4:c.2083C>T	p.Gln695Ter	p.Q695*	ENST00000257430	NM_000038.5	695	Cag/Tag																																																																															
MSH3	4437	MSKCC	GRCh37	5	79950665	79950665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	291	287	0	ENST00000265081.6:c.119C>T	p.Ser40Phe	p.S40F	ENST00000265081	NM_002439.4	40	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0044123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	436	892	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98212179	98212179	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	195	451	0	ENST00000331920.6:c.3493C>G	p.Leu1165Val	p.L1165V	ENST00000331920	NM_000264.3	1165	Ctc/Gtc																																																																															
MED12	9968	MSKCC	GRCh37	X	70357429	70357429	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	347	904	0	ENST00000374080.3:c.5770C>G	p.Gln1924Glu	p.Q1924E	ENST00000374080		1924	Cag/Gag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0044142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	97	465	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	432284	432284	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	117	557	0	ENST00000399788.2:c.2239A>G	p.Thr747Ala	p.T747A	ENST00000399788	NM_001042603.1	747	Aca/Gca																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	125	286	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	106	331	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	401	653	0	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	258	581	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296358	15296358	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	174	724	0	ENST00000263388.2:c.2084del	p.Pro695ArgfsTer165	p.P695Rfs*165	ENST00000263388	NM_000435.2	695	cCg/cg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730802	40730802	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747513450		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	350	501	3	ENST00000373198.4:c.3733G>A	p.Gly1245Arg	p.G1245R	ENST00000373198	NM_133170.3	1245	Gga/Aga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs750808726		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	111	662	3	ENST00000261937.6:c.1267dup	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	137	210	2	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	52	150	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	123	326	1	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																															
RB1	5925	MSKCC	GRCh37	13	49030479	49030479	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	62	236	0	ENST00000267163.4:c.1959del	p.Val654CysfsTer4	p.V654Cfs*4	ENST00000267163	NM_000321.2	652	Aaa/aa																																																																															
CIC	23152	MSKCC	GRCh37	19	42799098	42799098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	214	734	2	ENST00000575354.2:c.4586del	p.Pro1529LeufsTer91	p.P1529Lfs*91	ENST00000575354	NM_015125.3	1528	Ccc/cc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910372	29910372	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	136	564	0	ENST00000376809.5:c.46del	p.Ala16ProfsTer4	p.A16Pfs*4	ENST00000376809	NM_002116.7	14	tcG/tc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	120	488	4	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36938271	36938271	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	123	650	1	ENST00000361632.4:c.690del	p.Met231CysfsTer32	p.M231Cfs*32	ENST00000361632		230	ccC/cc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467855	99467856	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	74	358	0	ENST00000268035.6:c.2732_2733dup	p.Gly912LeufsTer26	p.G912Lfs*26	ENST00000268035	NM_000875.3	908	-/TC																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513282	44513287	+	inframe_deletion	In_Frame_Del	DEL	CCACCG	CCACCG	-	rs769920981		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	70	562	0	ENST00000291552.4:c.648_653del	p.Gly222_Gly223del	p.G222_G223del	ENST00000291552	NM_006758.2	216	ggCGGTGGt/ggt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440757	56440757	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774211426		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	80	438	0	ENST00000407977.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000407977		154	cCg/cTg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138915	64138915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	78	379	0	ENST00000334205.4:c.2287del	p.Arg763AlafsTer21	p.R763Afs*21	ENST00000334205	NM_003942.2	761	gCc/gc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830450	72830450	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	48	364	0	ENST00000268489.5:c.6131del	p.Pro2044LeufsTer57	p.P2044Lfs*57	ENST00000268489	NM_006885.3	2044	cCt/ct																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs767319284		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	104	545	2	ENST00000337652.1:c.1561dup	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346220	152346220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	150	440	4	ENST00000359321.1:c.350del	p.Leu117TrpfsTer17	p.L117Wfs*17	ENST00000359321	NM_005431.1	117	tTg/tg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	56	773	6	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	173	586	11	ENST00000382895.3:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382895	NM_133330.2	1341	Ccc/cc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100397	157100399	+	inframe_deletion	In_Frame_Del	DEL	CGC	CGC	-	rs766249098		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	12	71	0	ENST00000346085.5:c.1348_1350del	p.Pro450del	p.P450del	ENST00000346085	NM_020732.3	445	gCGCcg/gcg																																																																															
CASP8	841	MSKCC	GRCh37	2	202131411	202131411	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs777784105		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	153	398	1	ENST00000358485.4:c.379C>T	p.Arg127Ter	p.R127*	ENST00000358485	NM_001080125.1	127	Cga/Tga																																																																															
RAD50	10111	MSKCC	GRCh37	5	131973889	131973889	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs761837416		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	54	240	0	ENST00000265335.6:c.3592C>T	p.Arg1198Ter	p.R1198*	ENST00000265335		1198	Cga/Tga																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561211	9561211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	103	407	0	ENST00000353224.5:c.571G>A	p.Asp191Asn	p.D191N	ENST00000353224	NM_177990.2	191	Gat/Aat																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99189323	99189323	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1173310435		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	34	453	0	ENST00000074304.5:c.2579G>A	p.Arg860Gln	p.R860Q	ENST00000074304	NM_001134224.1	860	cGg/cAg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300039	137300040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755912201		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	173	677	3	ENST00000481739.1:c.331dup	p.Leu111ProfsTer70	p.L111Pfs*70	ENST00000481739	NM_002957.4	108	-/C																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658800	3658800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746769352		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	35	533	0	ENST00000294008.3:c.166G>A	p.Ala56Thr	p.A56T	ENST00000294008	NM_032444.2	56	Gct/Act																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62321665	62321665	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs750251447		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	138	517	0	ENST00000482936.1:c.2284C>T	p.Arg762Trp	p.R762W	ENST00000482936		762	Cgg/Tgg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742497	17742497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	151	599	0	ENST00000250003.3:c.679G>A	p.Glu227Lys	p.E227K	ENST00000250003	NM_002478.4	227	Gaa/Aaa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591134	67591134	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767013611		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	24	236	0	ENST00000274335.5:c.1727C>T	p.Thr576Met	p.T576M	ENST00000274335		576	aCg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836322	151836322	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1064796342		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	129	428	0	ENST00000262189.6:c.14483G>A	p.Arg4828His	p.R4828H	ENST00000262189	NM_170606.2	4828	cGc/cAc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430227	181430227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	88	296	0	ENST00000325404.1:c.79G>A	p.Ala27Thr	p.A27T	ENST00000325404	NM_003106.3	27	Gcg/Acg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121118	11121118	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	286	558	1	ENST00000344626.4:c.2185C>T	p.Gln729Ter	p.Q729*	ENST00000344626	NM_003072.3	729	Cag/Tag																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422039	81422040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	226	370	0	ENST00000298171.2:c.17dup	p.Leu6PhefsTer56	p.L6Ffs*56	ENST00000298171	NM_000369.2	5	-/T																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262714	16262714	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1022457753		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	67	349	0	ENST00000375759.3:c.9979G>A	p.Ala3327Thr	p.A3327T	ENST00000375759	NM_015001.2	3327	Gcc/Acc																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598207	28598207	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	212	654	0	ENST00000253063.3:c.179G>T	p.Ser60Ile	p.S60I	ENST00000253063	NM_031459.4	60	aGc/aTc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115733	8115733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	87	334	0	ENST00000346208.3:c.1079G>A	p.Gly360Asp	p.G360D	ENST00000346208		360	gGc/gAc																																																																															
TET1	80312	MSKCC	GRCh37	10	70406039	70406039	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	140	549	0	ENST00000373644.4:c.3553A>G	p.Thr1185Ala	p.T1185A	ENST00000373644	NM_030625.2	1185	Aca/Gca																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18573903	18573903	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	25	300	0	ENST00000266497.5:c.2221G>T	p.Ala741Ser	p.A741S	ENST00000266497		741	Gca/Tca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446840	49446840	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1370093761		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	39	456	1	ENST00000301067.7:c.970C>T	p.Arg324Trp	p.R324W	ENST00000301067	NM_003482.3	324	Cgg/Tgg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012365	29012365	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	125	353	0	ENST00000282397.4:c.506T>A	p.Leu169Ter	p.L169*	ENST00000282397	NM_002019.4	169	tTa/tAa																																																																															
B2M	567	MSKCC	GRCh37	15	45007693	45007693	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	55	288	0	ENST00000558401.1:c.140T>G	p.Val47Gly	p.V47G	ENST00000558401	NM_004048.2	47	gTg/gGg																																																																															
CBFB	865	MSKCC	GRCh37	16	67063364	67063364	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	96	311	0	ENST00000412916.2:c.54T>A	p.Phe18Leu	p.F18L	ENST00000412916		18	ttT/ttA																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992303	72992303	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1405980712		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	110	685	0	ENST00000268489.5:c.1742T>C	p.Val581Ala	p.V581A	ENST00000268489	NM_006885.3	581	gTg/gCg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81972415	81972415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	129	352	0	ENST00000359376.3:c.3208G>A	p.Ala1070Thr	p.A1070T	ENST00000359376	NM_002661.3	1070	Gct/Act																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763496	59763496	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1060501733		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	119	311	0	ENST00000259008.2:c.2606A>G	p.Gln869Arg	p.Q869R	ENST00000259008	NM_032043.2	869	cAg/cGg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600362	10600362	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1281598803		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	262	607	0	ENST00000171111.5:c.1493G>A	p.Arg498Gln	p.R498Q	ENST00000171111	NM_203500.1	498	cGa/cAa																																																																															
CIC	23152	MSKCC	GRCh37	19	42797135	42797135	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	237	711	0	ENST00000575354.2:c.3501del	p.Lys1168ArgfsTer13	p.K1168Rfs*13	ENST00000575354	NM_015125.3	1166	gCc/gc																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62292821	62292822	+	inframe_insertion,NMD_transcript_variant	In_Frame_Ins	INS	-	-	GCT	rs1319920036		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	124	323	0	ENST00000482936.1:c.287_289dup	p.Ala96dup	p.A96dup	ENST00000482936		96	-/GCT																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940817	49940817	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	155	637	0	ENST00000296474.3:c.226A>G	p.Asn76Asp	p.N76D	ENST00000296474	NM_002447.2	76	Aat/Gat																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361163	66361163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	48	270	0	ENST00000273854.3:c.1009G>A	p.Val337Ile	p.V337I	ENST00000273854	NM_004439.5	337	Gtc/Atc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751242	57751242	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	88	270	0	ENST00000274289.3:c.1626-1G>C		p.X542_splice	ENST00000274289	NM_006622.3	542																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67575490	67575490	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148059720		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	108	282	0	ENST00000274335.5:c.563G>A	p.Arg188His	p.R188H	ENST00000274335		188	cGc/cAc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372056	55372056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	32	347	0	ENST00000297316.4:c.746G>A	p.Gly249Asp	p.G249D	ENST00000297316	NM_022454.3	249	gGc/gAc																																																																															
TEK	7010	MSKCC	GRCh37	9	27172631	27172631	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	130	410	0	ENST00000380036.4:c.646T>C	p.Trp216Arg	p.W216R	ENST00000380036	NM_000459.3	216	Tgg/Cgg																																																																															
PAX5	5079	MSKCC	GRCh37	9	36923357	36923357	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	159	535	0	ENST00000358127.4:c.905T>C	p.Val302Ala	p.V302A	ENST00000358127	NM_001280556.1	302	gTg/gCg																																																																															
ABL1	25	MSKCC	GRCh37	9	133759881	133759881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1310633113		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	98	696	0	ENST00000318560.5:c.2204C>T	p.Thr735Met	p.T735M	ENST00000318560	NM_005157.4	735	aCg/aTg																																																																															
ABL1	25	MSKCC	GRCh37	9	133759889	133759889	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138167706		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	100	689	0	ENST00000318560.5:c.2212C>T	p.Arg738Trp	p.R738W	ENST00000318560	NM_005157.4	738	Cgg/Tgg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061100	38061204	+	inframe_deletion	In_Frame_Del	DEL	GGTCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGGC	GGTCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGGC	-			P-0044548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	191	138	0	ENST00000250448.2:c.785_889del	p.Arg262_Asp296del	p.R262_D296del	ENST00000250448	NM_004496.3	262	cGCCAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGCGGCCCTGAGAGCCGCAAGGACCcc/ccc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618605	37618605	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	117	491	0	ENST00000447079.4:c.283del	p.Glu95ArgfsTer29	p.E95Rfs*29	ENST00000447079	NM_015083.1	94	aGg/ag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37667806	37667808	+	inframe_deletion	In_Frame_Del	DEL	TAC	TAC	-			P-0044548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	93	404	0	ENST00000447079.4:c.2692_2694del	p.Thr898del	p.T898del	ENST00000447079	NM_015083.1	897	atTACt/att																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361229	66361229	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	45	313	0	ENST00000273854.3:c.943C>G	p.His315Asp	p.H315D	ENST00000273854	NM_004439.5	315	Cac/Gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0044574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	353	629	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0044574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	116	262	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258744	115258744	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434596		P-0044574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	182	325	0	ENST00000369535.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000369535	NM_002524.4	13	gGt/gAt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981792	70981792	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	332	667	1	ENST00000276594.2:c.304T>C	p.Tyr102His	p.Y102H	ENST00000276594	NM_024504.3	102	Tac/Cac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228998	36228998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	365	593	1	ENST00000222270.7:c.7778G>A	p.Arg2593His	p.R2593H	ENST00000222270	NM_014727.1	2593	cGc/cAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920419	114920419	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs750925453		P-0044574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	234	409	0	ENST00000543371.1:c.1360G>T	p.Asp454Tyr	p.D454Y	ENST00000543371	NM_001198531.1	454	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0044641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	26	355	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747342068		P-0044641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	49	833	0	ENST00000269305.4:c.394A>G	p.Lys132Glu	p.K132E	ENST00000269305	NM_001126112.2	132	Aag/Gag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	97	308	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	47	470	6	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437565	56437566	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	142	520	0	ENST00000407977.2:c.896_897del	p.Val299GlyfsTer143	p.V299Gfs*143	ENST00000407977		299	gTG/g																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	66	690	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120480582	120480582	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368918146		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	99	452	0	ENST00000256646.2:c.3235G>A	p.Val1079Ile	p.V1079I	ENST00000256646	NM_024408.3	1079	Gtt/Att																																																																															
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	85	315	1	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	74	327	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	121	632	4	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	65	299	0	ENST00000303115.3:c.361del	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11169362	11169362	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	99	404	0	ENST00000361445.4:c.7513C>T	p.Arg2505Ter	p.R2505*	ENST00000361445	NM_004958.3	2505	Cga/Tga																																																																															
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	172	728	0	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55138645	55138645	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1031763557		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	119	414	0	ENST00000257290.5:c.1322C>T	p.Pro441Leu	p.P441L	ENST00000257290	NM_006206.4	441	cCg/cTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201671	66201671	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773217274		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	93	369	0	ENST00000273854.3:c.2831C>T	p.Thr944Met	p.T944M	ENST00000273854	NM_004439.5	944	aCg/aTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911443	32911443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	70	339	0	ENST00000380152.3:c.2957del	p.Asn986IlefsTer5	p.N986Ifs*5	ENST00000380152		984	gAa/ga																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	143	485	6	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740623	58740624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs763475304		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	107	499	1	ENST00000305921.3:c.1535dup	p.Asn512LysfsTer16	p.N512Kfs*16	ENST00000305921	NM_003620.3	510	caa/cAaa																																																																															
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	136	711	0	ENST00000575354.2:c.3743del	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	17	139	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513282	44513287	+	inframe_deletion	In_Frame_Del	DEL	CCACCG	CCACCG	-	rs769920981		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	97	450	0	ENST00000291552.4:c.648_653del	p.Gly222_Gly223del	p.G222_G223del	ENST00000291552	NM_006758.2	216	ggCGGTGGt/ggt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214592	5214592	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369295620		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	157	657	0	ENST00000357368.4:c.4474C>T	p.Arg1492Trp	p.R1492W	ENST00000357368	NM_002850.3	1492	Cgg/Tgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845640	72845640	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148354034		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	141	554	0	ENST00000268489.5:c.3700G>A	p.Asp1234Asn	p.D1234N	ENST00000268489	NM_006885.3	1234	Gat/Aat																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337603	73337603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	47	172	0	ENST00000377767.4:c.2113G>A	p.Ala705Thr	p.A705T	ENST00000377767	NM_014953.3	705	Gca/Aca																																																																															
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	27	306	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	162	721	5	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	176	509	1	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259480	16259480	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	100	458	0	ENST00000375759.3:c.6750del	p.Ala2251GlnfsTer102	p.A2251Qfs*102	ENST00000375759	NM_015001.2	2249	Ccc/cc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138135	2138135	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201206500		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	145	728	0	ENST00000219476.3:c.5155G>A	p.Ala1719Thr	p.A1719T	ENST00000219476	NM_000548.3	1719	Gca/Aca																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119909	70119910	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	62	514	1	ENST00000245479.2:c.916dup	p.Val306GlyfsTer272	p.V306Gfs*272	ENST00000245479	NM_000346.3	304	ccg/ccGg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741349	17741349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	136	663	0	ENST00000250003.3:c.20C>T	p.Pro7Leu	p.P7L	ENST00000250003	NM_002478.4	7	cCg/cTg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	124	400	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149457719	149457719	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149911279		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	164	591	0	ENST00000286301.3:c.685G>A	p.Val229Ile	p.V229I	ENST00000286301	NM_005211.3	229	Gtt/Att																																																																															
TEK	7010	MSKCC	GRCh37	9	27158026	27158026	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	42	504	0	ENST00000380036.4:c.255del	p.Val86LeufsTer31	p.V86Lfs*31	ENST00000380036	NM_000459.3	84	Aaa/aa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339110	65339111	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	101	460	2	ENST00000342505.4:c.425dup	p.Ile143AspfsTer9	p.I143Dfs*9	ENST00000342505	NM_002227.2	142	aag/aaAg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099427	157099432	+	inframe_deletion	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	rs1234257273		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	26	336	0	ENST00000346085.5:c.381_386del	p.Gln130_Gln131del	p.Q130_Q131del	ENST00000346085	NM_020732.3	122	CAGCAG/-																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2207672	2207672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	126	548	0	ENST00000398665.3:c.956G>A	p.Arg319His	p.R319H	ENST00000398665	NM_032482.2	319	cGc/cAc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495050	56495050	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758743468		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	179	589	0	ENST00000267101.3:c.3407G>A	p.Arg1136His	p.R1136H	ENST00000267101	NM_001982.3	1136	cGc/cAc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271295	18271295	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754343201		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	141	593	0	ENST00000222254.8:c.337G>A	p.Asp113Asn	p.D113N	ENST00000222254	NM_005027.3	113	Gac/Aac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44941988	44941988	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	94	326	0	ENST00000377967.4:c.3241del	p.Thr1081ProfsTer2	p.T1081Pfs*2	ENST00000377967	NM_021140.2	1080	Aaa/aa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460475	149460476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs759017762		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	118	623	0	ENST00000286301.3:c.161dup	p.Ser55IlefsTer9	p.S55Ifs*9	ENST00000286301	NM_005211.3	54	cca/ccCa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168677	56168678	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	112	366	0	ENST00000399503.3:c.1535dup	p.Ser513PhefsTer28	p.S513Ffs*28	ENST00000399503	NM_005921.1	511	tcc/tCcc																																																																															
SDHC	6391	MSKCC	GRCh37	1	161310419	161310419	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778582853		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	34	379	0	ENST00000367975.2:c.215G>A	p.Arg72His	p.R72H	ENST00000367975	NM_003001.3	72	cGt/cAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133209276	133209276	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	52	733	0	ENST00000320574.5:c.6110C>A	p.Ala2037Asp	p.A2037D	ENST00000320574	NM_006231.2	2037	gCc/gAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032349	10032349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	105	390	0	ENST00000330684.3:c.474G>A	p.Met158Ile	p.M158I	ENST00000330684	NM_001134407.1	158	atG/atA																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16024380	16024380	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148932674		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	67	294	0	ENST00000268712.3:c.1838C>T	p.Pro613Leu	p.P613L	ENST00000268712	NM_006311.3	613	cCg/cTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11094973	11094973	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	176	814	1	ENST00000344626.4:c.146C>A	p.Pro49Gln	p.P49Q	ENST00000344626	NM_003072.3	49	cCg/cAg																																																																															
RRAS	6237	MSKCC	GRCh37	19	50138859	50138859	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369588682		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	161	803	0	ENST00000246792.3:c.631G>A	p.Gly211Arg	p.G211R	ENST00000246792	NM_006270.3	211	Ggg/Agg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48028096	48028096	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774755404		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	51	310	0	ENST00000234420.5:c.2974G>A	p.Glu992Lys	p.E992K	ENST00000234420	NM_000179.2	992	Gaa/Aaa																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29120999	29120999	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	130	410	0	ENST00000328354.6:c.558T>G	p.Asn186Lys	p.N186K	ENST00000328354	NM_007194.3	186	aaT/aaG																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30648422	30648422	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	144	605	0	ENST00000359013.4:c.47T>C	p.Leu16Pro	p.L16P	ENST00000359013	NM_001024847.2	16	cTg/cCg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119634972	119634972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	63	278	0	ENST00000316626.5:c.527G>A	p.Gly176Glu	p.G176E	ENST00000316626		176	gGa/gAa																																																																															
TET2	54790	MSKCC	GRCh37	4	106156216	106156217	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1392160935		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	69	307	0	ENST00000380013.4:c.1121dup	p.Asn374LysfsTer2	p.N374Kfs*2	ENST00000380013	NM_001127208.2	373	caa/cAaa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753129	57753129	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	95	311	0	ENST00000274289.3:c.887G>T	p.Arg296Met	p.R296M	ENST00000274289	NM_006622.3	296	aGg/aTg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517963	176517963	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201257476		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	124	625	0	ENST00000292408.4:c.461G>A	p.Arg154His	p.R154H	ENST00000292408	NM_213647.1	154	cGc/cAc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163432	32163432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	169	671	0	ENST00000375023.3:c.5794G>A	p.Gly1932Arg	p.G1932R	ENST00000375023	NM_004557.3	1932	Gga/Aga																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38272341	38272341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	130	555	0	ENST00000425967.3:c.2026G>A	p.Ala676Thr	p.A676T	ENST00000425967	NM_001174067.1	676	Gca/Aca																																																																															
NBN	4683	MSKCC	GRCh37	8	90995030	90995030	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs876658553		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	124	395	0	ENST00000265433.3:c.91T>C	p.Cys31Arg	p.C31R	ENST00000265433	NM_002485.4	31	Tgt/Cgt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400110	139400110	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371068504		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	186	793	0	ENST00000277541.6:c.4238G>A	p.Arg1413His	p.R1413H	ENST00000277541	NM_017617.3	1413	cGt/cAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409111	139409111	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	134	752	0	ENST00000277541.6:c.2058del	p.Cys687AlafsTer85	p.C687Afs*85	ENST00000277541	NM_017617.3	686	ccC/cc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285056	15285056	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774386192		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	138	736	0	ENST00000263388.2:c.4559C>T	p.Pro1520Leu	p.P1520L	ENST00000263388	NM_000435.2	1520	cCg/cTg																																																																															
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs864622007		P-0044808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	192	300	1	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831069	72831069	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	247	468	0	ENST00000268489.5:c.5512C>T	p.Gln1838Ter	p.Q1838*	ENST00000268489	NM_006885.3	1838	Cag/Tag																																																																															
PALB2	79728	MSKCC	GRCh37	16	23634326	23634328	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0044808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	265	478	0	ENST00000261584.4:c.2958_2960del	p.Asp986_Gln987delinsGlu	p.D986_Q987delinsE	ENST00000261584	NM_024675.3	986	gaTCAa/gaa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226314	2226314	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	488	994	0	ENST00000398665.3:c.3794C>G	p.Ser1265Cys	p.S1265C	ENST00000398665	NM_032482.2	1265	tCc/tGc																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793309	33793330	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	GGCCGACTCCATGGGGGAGTTA	GGCCGACTCCATGGGGGAGTTA	-			P-0044808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	76	225	1	ENST00000498907.2:c.-10_12del		p.*4*	ENST00000498907	NM_004364.3																																																																																	
MDC1	9656	MSKCC	GRCh37	6	30671666	30671666	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	189	715	0	ENST00000376406.3:c.5294A>T	p.Glu1765Val	p.E1765V	ENST00000376406	NM_014641.2	1765	gAa/gTa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117862890	117862903	+	frameshift_variant	Frame_Shift_Del	DEL	TTTCTCCTTCTCTT	TTTCTCCTTCTCTT	-			P-0044808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	259	412	0	ENST00000297338.2:c.1574_1587del	p.Lys525ArgfsTer7	p.K525Rfs*7	ENST00000297338	NM_006265.2	525	aAAGAGAAGGAGAAA/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs876660821		P-0044883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	445	561	1	ENST00000269305.4:c.537T>G	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caG																																																																															
APC	324	MSKCC	GRCh37	5	112174502	112174502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876659539		P-0044883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	50	281	0	ENST00000257430.4:c.3211C>T	p.Gln1071Ter	p.Q1071*	ENST00000257430	NM_000038.5	1071	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0044883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	35	168	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513527	149513527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	169	569	1	ENST00000261799.4:c.676C>T	p.Arg226Cys	p.R226C	ENST00000261799	NM_002609.3	226	Cgc/Tgc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956781	68956781	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1320143244		P-0044883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	194	604	0	ENST00000288368.4:c.899T>C	p.Ile300Thr	p.I300T	ENST00000288368	NM_024870.2	300	aTc/aCc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410621	63410621	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	126	653	0	ENST00000330258.3:c.2546A>C	p.His849Pro	p.H849P	ENST00000330258	NM_152424.3	849	cAt/cCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0044920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	66	319	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578444	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	168	711	0	ENST00000269305.4:c.486dup	p.Tyr163LeufsTer18	p.Y163Lfs*18	ENST00000269305	NM_001126112.2	162	-/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	50	244	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PARP1	142	MSKCC	GRCh37	1	226550826	226550826	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0044992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	45	312	0	ENST00000366794.5:c.2822T>A	p.Leu941Ter	p.L941*	ENST00000366794	NM_001618.3	941	tTa/tAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	117	366	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577035	7577047	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGGGCAGCTCG	TGGGGGCAGCTCG	-			P-0045004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	208	714	0	ENST00000269305.4:c.891_903del	p.His297GlnfsTer44	p.H297Qfs*44	ENST00000269305	NM_001126112.2	297	caCGAGCTGCCCCCA/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0045237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	103	618	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0045950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	156	647	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0045950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	159	357	1	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99193530	99193530	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	95	702	0	ENST00000074304.5:c.2725G>C	p.Glu909Gln	p.E909Q	ENST00000074304	NM_001134224.1	909	Gag/Cag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877837	151877837	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	34	221	0	ENST00000262189.6:c.7108A>G	p.Thr2370Ala	p.T2370A	ENST00000262189	NM_170606.2	2370	Act/Gct																																																																															
CDH1	999	MSKCC	GRCh37	16	68835613	68835613	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	224	658	1	ENST00000261769.5:c.208del	p.Ser70ProfsTer13	p.S70Pfs*13	ENST00000261769	NM_004360.3	68	taT/ta																																																																															
MED12	9968	MSKCC	GRCh37	X	70347223	70347223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	44	732	1	ENST00000374080.3:c.2887G>A	p.Asp963Asn	p.D963N	ENST00000374080		963	Gat/Aat																																																																															
AKT3	10000	MSKCC	GRCh37	1	243859019	243859019	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0046999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	195	215	0	ENST00000263826.5:c.47-1G>C		p.X16_splice	ENST00000263826	NM_005465.4	16																																																																																
BRCA2	675	MSKCC	GRCh37	13	32907380	32907380	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	128	251	0	ENST00000380152.3:c.1766del	p.Lys589SerfsTer25	p.K589Sfs*25	ENST00000380152		589	Aag/ag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028649	12028660	+	inframe_deletion	In_Frame_Del	DEL	TGATGTCCGCTC	TGATGTCCGCTC	-			P-0046999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	134	396	0	ENST00000353533.5:c.859_870del	p.Arg287_Val290del	p.R287_V290del	ENST00000353533	NM_003010.3	284	taTGATGTCCGCTCt/tat																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430824	181430824	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	410	1255	0	ENST00000325404.1:c.676T>G	p.Ser226Ala	p.S226A	ENST00000325404	NM_003106.3	226	Tcc/Gcc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231183	46231183	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs772564527		P-0047730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	13	259	0	ENST00000334344.6:c.1103G>C	p.Arg368Thr	p.R368T	ENST00000334344	NM_152641.2	368	aGa/aCa																																																																															
EP300	2033	MSKCC	GRCh37	22	41545165	41545165	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1474261122		P-0047730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	101	401	0	ENST00000263253.7:c.2365G>A	p.Ala789Thr	p.A789T	ENST00000263253	NM_001429.3	789	Gct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	64	291	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395738	45395738	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	36	312	0	ENST00000262160.6:c.396G>A	p.Trp132Ter	p.W132*	ENST00000262160	NM_005901.5	132	tgG/tgA																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	20	367	0	ENST00000349496.5:c.1982G>A	p.Arg661Gln	p.R661Q	ENST00000349496	NM_001904.3	661	cGa/cAa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038929	12038929	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	94	220	0	ENST00000396373.4:c.1222A>T	p.Arg408Trp	p.R408W	ENST00000396373	NM_001987.4	408	Agg/Tgg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323096	31323096	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0047736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	20	917	1	ENST00000412585.2:c.893G>A	p.Trp298Ter	p.W298*	ENST00000412585	NM_005514.6	298	tGg/tAg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374349	118374349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	15	324	0	ENST00000534358.1:c.7742C>A	p.Thr2581Asn	p.T2581N	ENST00000534358	NM_005933.3	2581	aCc/aAc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477191	67477191	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	96	500	0	ENST00000327367.4:c.998A>T	p.Lys333Met	p.K333M	ENST00000327367	NM_005902.3	333	aAg/aTg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374903	45374903	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	42	435	0	ENST00000262160.6:c.940G>C	p.Gly314Arg	p.G314R	ENST00000262160	NM_005901.5	314	Ggt/Cgt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786863	135786863	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs118203483		P-0047736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	36	433	0	ENST00000298552.3:c.1006C>T	p.Arg336Trp	p.R336W	ENST00000298552	NM_001162426.1	336	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	150	394	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0049743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	81	446	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0049743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	254	341	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0049743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	15	412	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625218	69625218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	379	904	1	ENST00000334134.2:c.575G>A	p.Arg192Gln	p.R192Q	ENST00000334134	NM_005247.2	192	cGg/cAg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946901	71946901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748853590		P-0049743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	331	774	1	ENST00000298229.2:c.2750G>A	p.Arg917His	p.R917H	ENST00000298229	NM_001567.3	917	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0051721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	318	797	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274114	10274114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	266	754	1	ENST00000330684.3:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000330684	NM_001134407.1	52	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0051721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	100	423	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670340	134670340	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1415689583		P-0051721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	98	441	1	ENST00000398015.3:c.251G>A	p.Arg84His	p.R84H	ENST00000398015	NM_004441.4	84	cGc/cAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134644668	134644668	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	33	543	0	ENST00000398015.3:c.69G>T	p.Met23Ile	p.M23I	ENST00000398015	NM_004441.4	23	atG/atT																																																																															
CDH1	999	MSKCC	GRCh37	16	68846083	68846083	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	79	699	0	ENST00000261769.5:c.1054G>C	p.Gly352Arg	p.G352R	ENST00000261769	NM_004360.3	352	Ggt/Cgt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47058708	47058714	+	frameshift_variant	Frame_Shift_Del	DEL	AGTACTT	AGTACTT	-			P-0051781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	39	512	0	ENST00000409792.3:c.7564_7570del	p.Lys2522ValfsTer13	p.K2522Vfs*13	ENST00000409792	NM_014159.6	2522	AAGTACTgt/gt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47155465	47155465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	20	333	1	ENST00000409792.3:c.4616G>A	p.Cys1539Tyr	p.C1539Y	ENST00000409792	NM_014159.6	1539	tGt/tAt																																																																															
FYN	2534	MSKCC	GRCh37	6	111995830	111995830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	27	369	0	ENST00000368678.4:c.1268C>T	p.Ala423Val	p.A423V	ENST00000368678		423	gCa/gTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445512	49445512	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1301516107		P-0051864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	90	523	0	ENST00000301067.7:c.1954C>T	p.Arg652Cys	p.R652C	ENST00000301067	NM_003482.3	652	Cgc/Tgc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912125	114912125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	67	411	0	ENST00000543371.1:c.1195T>C	p.Tyr399His	p.Y399H	ENST00000543371	NM_001198531.1	399	Tac/Cac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518134	187518136	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-	rs750605265		P-0051864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	82	450	0	ENST00000441802.2:c.12558_12560del	p.Val4187del	p.V4187del	ENST00000441802	NM_005245.3	4186	gtTGTg/gtg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519971		P-0053565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	96	441	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	100	247	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	127	410	0	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238958	5238958	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	244	551	0	ENST00000357368.4:c.1821del	p.Val608TrpfsTer30	p.V608Wfs*30	ENST00000357368	NM_002850.3	607	ccC/cc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	39	212	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519896		P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	142	275	0	ENST00000281708.4:c.1514G>A	p.Arg505His	p.R505H	ENST00000281708	NM_033632.3	505	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	522	529	1	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	211	534	2	ENST00000268489.5:c.5677_5678del	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	187	374	0	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																															
ERG	2078	MSKCC	GRCh37	21	39817489	39817489	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763409220		P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	98	492	0	ENST00000288319.7:c.74C>T	p.Thr25Met	p.T25M	ENST00000288319	NM_182918.3	25	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	146	421	0	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393659	139393659	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773137647		P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1216	475	1009	0	ENST00000277541.6:c.5987C>T	p.Thr1996Met	p.T1996M	ENST00000277541	NM_017617.3	1996	aCg/aTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602746	10602746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1197	364	977	3	ENST00000171111.5:c.832C>T	p.Pro278Ser	p.P278S	ENST00000171111	NM_203500.1	278	Ccg/Tcg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468080	50468080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	167	547	0	ENST00000331340.3:c.1315C>T	p.Arg439Cys	p.R439C	ENST00000331340	NM_006060.4	439	Cgc/Tgc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160574	56160574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	27	182	0	ENST00000399503.3:c.848G>A	p.Arg283Lys	p.R283K	ENST00000399503	NM_005921.1	283	aGa/aAa																																																																															
RARA	5914	MSKCC	GRCh37	17	38512474	38512474	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770732457		P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1447	213	969	1	ENST00000254066.5:c.1385C>T	p.Pro462Leu	p.P462L	ENST00000254066	NM_000964.3	462	cCg/cTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	48	439	1	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																															
SMO	6608	MSKCC	GRCh37	7	128829075	128829075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1247591045		P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	25	30	0	ENST00000249373.3:c.88del	p.Ala30ArgfsTer25	p.A30Rfs*25	ENST00000249373	NM_005631.4	28	cGg/cg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	175	472	8	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
IGF2	3481	MSKCC	GRCh37	11	2161456	2161456	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs970922682		P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	332	678	0	ENST00000434045.2:c.71G>A	p.Arg24His	p.R24H	ENST00000434045	NM_001127598.1	24	cGc/cAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28897046	28897047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	170	426	0	ENST00000282397.4:c.2833dup	p.Met945AsnfsTer15	p.M945Nfs*15	ENST00000282397	NM_002019.4	945	atg/aAtg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229256	36229256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	309	713	0	ENST00000222270.7:c.7946G>A	p.Arg2649His	p.R2649H	ENST00000222270	NM_014727.1	2649	cGc/cAc																																																																															
HGF	3082	MSKCC	GRCh37	7	81381559	81381559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777026877		P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	86	218	1	ENST00000222390.5:c.502C>T	p.Arg168Trp	p.R168W	ENST00000222390	NM_000601.4	168	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259533	55259533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	217	522	0	ENST00000275493.2:c.2591C>T	p.Ala864Val	p.A864V	ENST00000275493	NM_005228.3	864	gCg/gTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7152776	7152776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	310	650	2	ENST00000302850.5:c.2192C>T	p.Thr731Met	p.T731M	ENST00000302850	NM_000208.2	731	aCg/aTg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38958587	38958587	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs532413623		P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	22	141	0	ENST00000357387.3:c.2378C>T	p.Ala793Val	p.A793V	ENST00000357387	NM_152756.3	793	gCg/gTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864391	57864391	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753413155		P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	351	811	2	ENST00000228682.2:c.1868G>A	p.Arg623Gln	p.R623Q	ENST00000228682	NM_005269.2	623	cGa/cAa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10247767	10247767	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781301028		P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1115	348	839	0	ENST00000340748.4:c.4435G>A	p.Val1479Met	p.V1479M	ENST00000340748		1479	Gtg/Atg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267003	41267003	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144087793		P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	159	384	0	ENST00000349496.5:c.674G>A	p.Arg225His	p.R225H	ENST00000349496	NM_001904.3	225	cGt/cAt																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72058545	72058545	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	160	412	0	ENST00000357731.5:c.895G>T	p.Ala299Ser	p.A299S	ENST00000357731	NM_173808.2	299	Gct/Tct																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88676895	88676895	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	37	493	0	ENST00000372037.3:c.680A>G	p.Gln227Arg	p.Q227R	ENST00000372037	NM_004329.2	227	cAg/cGg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88681405	88681405	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	153	286	1	ENST00000372037.3:c.1295G>T	p.Ser432Ile	p.S432I	ENST00000372037	NM_004329.2	432	aGc/aTc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18576963	18576963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	241	341	0	ENST00000266497.5:c.2371C>A	p.Arg791Ser	p.R791S	ENST00000266497		791	Cgt/Agt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81968079	81968079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	183	348	0	ENST00000359376.3:c.2785G>A	p.Glu929Lys	p.E929K	ENST00000359376	NM_002661.3	929	Gag/Aag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350571	89350571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	198	445	0	ENST00000301030.4:c.2379G>T	p.Lys793Asn	p.K793N	ENST00000301030	NM_001256183.1	793	aaG/aaT																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250867	10250867	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	336	745	0	ENST00000340748.4:c.3613A>G	p.Asn1205Asp	p.N1205D	ENST00000340748		1205	Aac/Gac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214683	36214683	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	328	766	0	ENST00000222270.7:c.3109G>T	p.Glu1037Ter	p.E1037*	ENST00000222270	NM_014727.1	1037	Gag/Tag																																																																															
ALK	238	MSKCC	GRCh37	2	29551328	29551329	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	236	547	0	ENST00000389048.3:c.1301dup	p.Met435AspfsTer22	p.M435Dfs*22	ENST00000389048	NM_004304.4	434	aag/aaAg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205736	128205736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	349	706	0	ENST00000341105.2:c.139G>A	p.Val47Ile	p.V47I	ENST00000341105	NM_032638.4	47	Gtc/Atc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821372	32821372	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	66	1015	1	ENST00000354258.4:c.222C>A	p.Cys74Ter	p.C74*	ENST00000354258	NM_000593.5	74	tgC/tgA																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528189	157528189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	383	507	1	ENST00000346085.5:c.5914G>A	p.Val1972Met	p.V1972M	ENST00000346085	NM_020732.3	1972	Gtg/Atg																																																																															
GATA1	2623	MSKCC	GRCh37	X	48649661	48649662	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	434	896	0	ENST00000376670.3:c.149dup	p.Ser51GlufsTer17	p.S51Efs*17	ENST00000376670	NM_002049.3	49	gcc/gCcc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411417	63411417	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370276785		P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	323	779	0	ENST00000330258.3:c.1750C>T	p.Arg584Cys	p.R584C	ENST00000330258	NM_152424.3	584	Cgt/Tgt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413062	63413062	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	471	849	0	ENST00000330258.3:c.105G>T	p.Glu35Asp	p.E35D	ENST00000330258	NM_152424.3	35	gaG/gaT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0061870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	151	435	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0061870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	114	412	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0061870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	52	290	0	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0061870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	47	246	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604702	48604730	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGGGACCGGATTACCCAAGACAGAGCA	CTGGGGACCGGATTACCCAAGACAGAGCA	-			P-0061870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	72	462	0	ENST00000342988.3:c.1524_1552del	p.Trp509GlnfsTer8	p.W509Qfs*8	ENST00000342988	NM_005359.5	508	ggCTGGGGACCGGATTACCCAAGACAGAGCAtc/ggtc																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22123515	22123515	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	77	295	0	ENST00000215832.6:c.1061T>A	p.Phe354Tyr	p.F354Y	ENST00000215832	NM_002745.4	354	tTc/tAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0061874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	20	245	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862796	9862796	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs749678183		P-0061879-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	40	438	0	ENST00000330684.3:c.2507T>C	p.Ile836Thr	p.I836T	ENST00000330684	NM_001134407.1	836	aTc/aCc																																																																															
ALK	238	MSKCC	GRCh37	2	29443675	29443675	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1034835558		P-0061890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	97	496	0	ENST00000389048.3:c.3542G>A	p.Arg1181His	p.R1181H	ENST00000389048	NM_004304.4	1181	cGc/cAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523501	106523501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373006568		P-0061890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	37	411	3	ENST00000359195.3:c.2653G>A	p.Ala885Thr	p.A885T	ENST00000359195	NM_002649.2	885	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112162807	112162807	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0061890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	73	343	1	ENST00000257430.4:c.1411G>T	p.Gly471Ter	p.G471*	ENST00000257430	NM_000038.5	471	Gga/Tga																																																																															
DDR2	4921	MSKCC	GRCh37	1	162722916	162722916	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	46	508	1	ENST00000367921.3:c.114del	p.Gly39AlafsTer45	p.G39Afs*45	ENST00000367921	NM_006182.2	38	ggA/gg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910802	114910802	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	49	545	0	ENST00000543371.1:c.923del	p.Gly308AlafsTer7	p.G308Afs*7	ENST00000543371	NM_001198531.1	307	acG/ac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061134	38061193	+	inframe_deletion	In_Frame_Del	DEL	GCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAA	GCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAA	-			P-0061938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			725	47	496	0	ENST00000250448.2:c.796_855del	p.Phe266_Ser285del	p.F266_S285del	ENST00000250448	NM_004496.3	266	TTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGC/-																																																																															
AR	367	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs137852578		P-0062005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	319	202	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0062005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	373	467	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508082	106508082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0062005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	869	452	1	ENST00000359195.3:c.76C>T	p.Arg26Cys	p.R26C	ENST00000359195	NM_002649.2	26	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112173301	112173313	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTCATAGTTTG	ATCTCATAGTTTG	-			P-0062005-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	289	347	0	ENST00000257430.4:c.2011_2023del	p.Ser671GlnfsTer2	p.S671Qfs*2	ENST00000257430	NM_000038.5	670	aaATCTCATAGTTTG/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0059355-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			152	86	657	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481627	56481627	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1429784531		P-0059355-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			258	86	920	1	ENST00000267101.3:c.662C>T	p.Pro221Leu	p.P221L	ENST00000267101	NM_001982.3	221	cCc/cTc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911548	114911548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059355-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			247	38	714	2	ENST00000543371.1:c.1066G>A	p.Ala356Thr	p.A356T	ENST00000543371	NM_001198531.1	356	Gca/Aca																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31435970	31435970	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs777416100		P-0059355-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			104	40	416	0	ENST00000344624.3:c.2944G>A	p.Val982Ile	p.V982I	ENST00000344624		982	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112175398	112175399	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0059355-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			106	153	701	3	ENST00000257430.4:c.4107_4108del	p.Pro1372ThrfsTer2	p.P1372Tfs*2	ENST00000257430	NM_000038.5	1369	ccCAaa/ccaa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857210	9857210	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0059355-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			217	31	902	0	ENST00000330684.3:c.4191T>G	p.Asn1397Lys	p.N1397K	ENST00000330684	NM_001134407.1	1397	aaT/aaG																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068386	26068386	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0059355-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			80	36	195	0	ENST00000435504.4:c.104T>G	p.Leu35Arg	p.L35R	ENST00000435504		35	cTt/cGt																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045987	26045987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059355-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			324	44	952	4	ENST00000540144.1:c.349C>T	p.Arg117Cys	p.R117C	ENST00000540144	NM_003531.2	117	Cgc/Tgc																																																																															
MED12	9968	MSKCC	GRCh37	X	70360624	70360653	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAACAGCAACAGCAG	CAGCAGCAGCAGCAGCAACAGCAACAGCAG	-			P-0059355-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			316	29	1077	2	ENST00000374080.3:c.6199_6228del	p.Gln2067_Gln2076del	p.Q2067_Q2076del	ENST00000374080		2062	CAGCAGCAGCAGCAGCAACAGCAACAGCAG/-																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99459342	99459343	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0061900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	73	646	0	ENST00000268035.6:c.1980_1981del	p.His660GlnfsTer21	p.H660Qfs*21	ENST00000268035	NM_000875.3	660	CAc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0061900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	362	1020	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
STAT3	6774	MSKCC	GRCh37	17	40474489	40474489	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1466712110		P-0061900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			803	216	811	0	ENST00000264657.5:c.1912G>A	p.Glu638Lys	p.E638K	ENST00000264657	NM_139276.2	638	Gaa/Aaa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78831617	78831617	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199793733		P-0061900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	135	755	0	ENST00000306801.3:c.1426G>A	p.Val476Met	p.V476M	ENST00000306801	NM_020761.2	476	Gtg/Atg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022346	31022346	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372418554		P-0061900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	354	952	0	ENST00000375687.4:c.1831G>A	p.Ala611Thr	p.A611T	ENST00000375687	NM_015338.5	611	Gcc/Acc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201765	66201765	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs878919973		P-0061900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	189	818	0	ENST00000273854.3:c.2737G>T	p.Asp913Tyr	p.D913Y	ENST00000273854	NM_004439.5	913	Gat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112170652	112170652	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	92	474	0	ENST00000257430.4:c.1748C>A	p.Ser583Ter	p.S583*	ENST00000257430	NM_000038.5	583	tCa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	201	816	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056604	26056604	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs2230653		P-0061900-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	192	782	0	ENST00000343677.2:c.53C>T	p.Ala18Val	p.A18V	ENST00000343677	NM_005319.3	18	gCc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0061901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	126	704	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0061901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	105	683	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0061901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	81	712	1	ENST00000269305.4:c.686_687del	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0061901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	144	521	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120103	70120103	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	201	775	0	ENST00000245479.2:c.1105C>T	p.Gln369Ter	p.Q369*	ENST00000245479	NM_000346.3	369	Cag/Tag																																																																															
CDK8	1024	MSKCC	GRCh37	13	26975440	26975440	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			810	65	634	0	ENST00000381527.3:c.1066C>T	p.Arg356Ter	p.R356*	ENST00000381527	NM_001260.1	356	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0061901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	87	502	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0061901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			716	136	786	1	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106853	27106853	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0061901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	172	884	0	ENST00000324856.7:c.6464T>G	p.Leu2155Arg	p.L2155R	ENST00000324856	NM_006015.4	2155	cTc/cGc																																																																															
NF1	4763	MSKCC	GRCh37	17	29667551	29667551	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0061901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	92	674	0	ENST00000358273.4:c.6950G>A	p.Trp2317Ter	p.W2317*	ENST00000358273	NM_001042492.2	2317	tGg/tAg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61715751	61715751	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0061901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	34	599	0	ENST00000401558.2:c.2178A>T	p.Glu726Asp	p.E726D	ENST00000401558	NM_003400.3	726	gaA/gaT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426671	212426671	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			737	45	756	0	ENST00000342788.4:c.2444T>C	p.Ile815Thr	p.I815T	ENST00000342788	NM_005235.2	815	aTt/aCt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71102858	71102858	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	80	803	0	ENST00000318789.4:c.349C>A	p.Gln117Lys	p.Q117K	ENST00000318789	NM_032682.5	117	Cag/Aag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144134	55144134	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0061901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	128	722	0	ENST00000257290.5:c.1963T>G	p.Leu655Val	p.L655V	ENST00000257290	NM_006206.4	655	Ttg/Gtg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876284	35876284	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			655	71	739	0	ENST00000303115.3:c.1078del	p.Ser360AlafsTer29	p.S360Afs*29	ENST00000303115	NM_002185.3	359	gAa/ga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86659185	86659185	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	29	334	0	ENST00000274376.6:c.1474A>G	p.Asn492Asp	p.N492D	ENST00000274376	NM_002890.2	492	Aat/Gat																																																																															
TEK	7010	MSKCC	GRCh37	9	27202857	27202857	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			799	52	674	0	ENST00000380036.4:c.1949T>C	p.Ile650Thr	p.I650T	ENST00000380036	NM_000459.3	650	aTt/aCt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0061915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	215	440	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717661	89717661	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0061915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	259	431	0	ENST00000371953.3:c.686C>G	p.Ser229Ter	p.S229*	ENST00000371953	NM_000314.4	229	tCa/tGa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913079	32913080	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs745456776		P-0061915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	270	454	0	ENST00000380152.3:c.4593dup	p.Val1532SerfsTer2	p.V1532Sfs*2	ENST00000380152		1529	-/A																																																																															
GAB2	9846	MSKCC	GRCh37	11	77934458	77934458	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0061915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	198	465	0	ENST00000361507.4:c.1567G>C	p.Ala523Pro	p.A523P	ENST00000361507	NM_080491.2	523	Gca/Cca																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434148	121434164	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCTCCACCAAGTGTC	CCCCTCCACCAAGTGTC	-			P-0061915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	275	589	0	ENST00000257555.6:c.1043_1059del	p.Leu348HisfsTer65	p.L348Hfs*65	ENST00000257555		347	CCCCTCCACCAAGTGTCc/c																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129431	2129431	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0061915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	127	497	0	ENST00000219476.3:c.3284+2T>A		p.X1095_splice	ENST00000219476	NM_000548.3	1095																																																																																
STAT5B	6777	MSKCC	GRCh37	17	40375417	40375417	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	152	585	0	ENST00000293328.3:c.533A>G	p.Glu178Gly	p.E178G	ENST00000293328	NM_012448.3	178	gAg/gGg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424436	47424436	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0061915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	153	509	0	ENST00000404338.3:c.2504T>G	p.Leu835Arg	p.L835R	ENST00000404338	NM_004491.4	835	cTg/cGg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47690210	47690210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	177	350	0	ENST00000233146.2:c.1427C>A	p.Pro476His	p.P476H	ENST00000233146	NM_000251.2	476	cCt/cAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57470684	57470684	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	211	409	1	ENST00000371085.3:c.157A>G	p.Lys53Glu	p.K53E	ENST00000371085	NM_000516.4	53	Aaa/Gaa																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73108193	73108223	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTTACTATTCAGCGACTATGTGAATTGTT	CTTTTACTATTCAGCGACTATGTGAATTGTT	-			P-0061915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	83	186	0	ENST00000356692.5:c.293_323del	p.Pro98GlnfsTer18	p.P98Qfs*18	ENST00000356692		98	cCTTTTACTATTCAGCGACTATGTGAATTGTTa/ca																																																																															
TET2	54790	MSKCC	GRCh37	4	106180875	106180880	+	inframe_deletion	In_Frame_Del	DEL	CAGAAG	CAGAAG	-			P-0061915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	195	375	0	ENST00000380013.4:c.3905_3910del	p.Arg1302_Ser1303del	p.R1302_S1303del	ENST00000380013	NM_001127208.2	1301	gcCAGAAGc/gcc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31508834	31508834	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061915-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1035	117	391	0	ENST00000344624.3:c.1481C>A	p.Ser494Tyr	p.S494Y	ENST00000344624		494	tCt/tAt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0061346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	427	450	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0061346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	133	209	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0061346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	299	510	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55153609	55153609	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060501520		P-0061346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	138	541	0	ENST00000257290.5:c.2575G>A	p.Val859Met	p.V859M	ENST00000257290	NM_006206.4	859	Gtg/Atg																																																																															
JUN	3725	MSKCC	GRCh37	1	59248394	59248394	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1329490786		P-0061346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	235	944	0	ENST00000371222.2:c.349G>A	p.Ala117Thr	p.A117T	ENST00000371222	NM_002228.3	117	Gcc/Acc																																																																															
RET	5979	MSKCC	GRCh37	10	43604521	43604532	+	inframe_deletion	In_Frame_Del	DEL	CCATGCAGCTGG	CCATGCAGCTGG	-			P-0061346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	148	846	0	ENST00000355710.3:c.1107_1118del	p.Met370_Ala373del	p.M370_A373del	ENST00000355710	NM_020975.4	369	aCCATGCAGCTGGcg/acg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	465627	465627	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1490638667		P-0061346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	63	413	0	ENST00000399788.2:c.749G>A	p.Gly250Asp	p.G250D	ENST00000399788	NM_001042603.1	250	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578511	7578528	+	inframe_deletion	In_Frame_Del	DEL	GTCTTGGCCAGTTGGCAA	GTCTTGGCCAGTTGGCAA	-			P-0061346-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	382	859	0	ENST00000269305.4:c.402_419del	p.Gln136_Cys141del	p.Q136_C141del	ENST00000269305	NM_001126112.2	134	ttTTGCCAACTGGCCAAGACc/ttc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513316	149513316	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061634-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			119	33	760	1	ENST00000261799.4:c.767G>T	p.Arg256Leu	p.R256L	ENST00000261799	NM_002609.3	256	cGg/cTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602580	10602580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061634-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			57	10	795	1	ENST00000171111.5:c.998G>T	p.Gly333Val	p.G333V	ENST00000171111	NM_203500.1	333	gGc/gTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs878853247		P-0061634-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			45	13	729	0	ENST00000326873.7:c.709G>T	p.Asp237Tyr	p.D237Y	ENST00000326873	NM_000455.4	237	Gac/Tac																																																																															
KLF5	688	MSKCC	GRCh37	13	73633489	73633489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061634-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			88	30	542	0	ENST00000377687.4:c.24G>T	p.Met8Ile	p.M8I	ENST00000377687	NM_001730.3	8	atG/atT																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569817	95569817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061634-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			122	26	607	0	ENST00000343455.3:c.3916G>T	p.Ala1306Ser	p.A1306S	ENST00000343455	NM_177438.2	1306	Gct/Tct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220087	36220087	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061634-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			123	11	819	0	ENST00000222270.7:c.4807C>T	p.Gln1603Ter	p.Q1603*	ENST00000222270	NM_014727.1	1603	Cag/Tag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157511254	157511254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061634-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			149	30	700	0	ENST00000346085.5:c.3772G>T	p.Ala1258Ser	p.A1258S	ENST00000346085	NM_020732.3	1258	Gcc/Tcc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401802	139401802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061634-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			81	15	805	0	ENST00000277541.6:c.3598G>T	p.Asp1200Tyr	p.D1200Y	ENST00000277541	NM_017617.3	1200	Gac/Tac																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139562786	139562786	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061634-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			85	19	802	0	ENST00000308874.7:c.52G>T	p.Gly18Cys	p.G18C	ENST00000308874		18	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0061638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			629	46	538	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0061638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			626	22	648	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876393	35876393	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			803	92	785	0	ENST00000303115.3:c.1185G>T	p.Lys395Asn	p.K395N	ENST00000303115	NM_002185.3	395	aaG/aaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0061638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			357	32	325	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476309	88476309	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			580	70	550	0	ENST00000360948.2:c.1823del	p.Gly608AlafsTer13	p.G608Afs*13	ENST00000360948	NM_001012338.2	608	gGc/gc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274029	10274029	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			896	119	867	0	ENST00000330684.3:c.240G>T	p.Lys80Asn	p.K80N	ENST00000330684	NM_001134407.1	80	aaG/aaT																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14026059	14026059	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			498	63	438	0	ENST00000311895.7:c.1019G>C	p.Arg340Pro	p.R340P	ENST00000311895	NM_005236.2	340	cGa/cCa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39241096	39241096	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			406	64	369	0	ENST00000402219.2:c.1975G>C	p.Asp659His	p.D659H	ENST00000402219	NM_005633.3	659	Gat/Cat																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751221	57751221	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0061638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			679	65	557	0	ENST00000274289.3:c.1646A>T	p.Glu549Val	p.E549V	ENST00000274289	NM_006622.3	549	gAg/gTg																																																																															
IRF4	3662	MSKCC	GRCh37	6	407576	407576	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs756602021		P-0061638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			511	28	490	0	ENST00000380956.4:c.1334G>T	p.Arg445Leu	p.R445L	ENST00000380956	NM_001195286.1	445	cGc/cTc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288978	33288978	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061638-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			924	94	836	0	ENST00000374542.5:c.574G>T	p.Glu192Ter	p.E192*	ENST00000374542	NM_001141970.1	192	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519991		P-0061781-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	187	736	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001366	29001366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779189056		P-0061781-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	120	572	2	ENST00000282397.4:c.1366G>A	p.Ala456Thr	p.A456T	ENST00000282397	NM_002019.4	456	Gca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0061781-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	252	350	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FLCN	201163	MSKCC	GRCh37	17	17116985	17116985	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763604691		P-0061782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			60	40	736	0	ENST00000285071.4:c.1724C>T	p.Ser575Leu	p.S575L	ENST00000285071	NM_144997.5	575	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs397516439		P-0061782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			14	38	738	1	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
SMARCA2	6595	MSKCC	GRCh37	9	2161878	2161878	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764576819		P-0061782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	63	565	0	ENST00000349721.2:c.4174G>A	p.Asp1392Asn	p.D1392N	ENST00000349721	NM_003070.3	1392	Gat/Aat																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86545139	86545139	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	22	688	0	ENST00000262426.4:c.964C>G	p.Pro322Ala	p.P322A	ENST00000262426	NM_001451.2	322	Cca/Gca																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260193	149260194	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAG			P-0061782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	30	543	0	ENST00000360632.3:c.699_700insCTT	p.Gln233_Lys234insLeu	p.Q233_K234insL	ENST00000360632	NM_015472.4	233	-/CTT																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149290701	149290701	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	36	523	0	ENST00000360632.3:c.518G>T	p.Ser173Ile	p.S173I	ENST00000360632	NM_015472.4	173	aGt/aTt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180038466	180038466	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			66	67	682	0	ENST00000261937.6:c.3551T>C	p.Val1184Ala	p.V1184A	ENST00000261937	NM_182925.4	1184	gTc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587781525		P-0061783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	204	688	0	ENST00000269305.4:c.842A>G	p.Asp281Gly	p.D281G	ENST00000269305	NM_001126112.2	281	gAc/gGc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625218	69625218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	365	791	0	ENST00000334134.2:c.575G>A	p.Arg192Gln	p.R192Q	ENST00000334134	NM_005247.2	192	cGg/cAg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30303669	30303669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	143	743	0	ENST00000262643.3:c.97G>T	p.Ala33Ser	p.A33S	ENST00000262643	NM_001238.2	33	Gca/Tca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790161	40790161	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	66	660	0	ENST00000373198.4:c.2570T>A	p.Leu857His	p.L857H	ENST00000373198	NM_133170.3	857	cTt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0061786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	429	723	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434170	121434170	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757068809		P-0061786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	194	788	0	ENST00000257555.6:c.1061C>T	p.Thr354Met	p.T354M	ENST00000257555		354	aCg/aTg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913237		P-0061786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	138	438	0	ENST00000369535.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000369535	NM_002524.4	12	gGt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0061786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	113	580	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	212	411	0	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100999	41100999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1371429276		P-0061786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	214	648	0	ENST00000373198.4:c.1357C>T	p.Arg453Cys	p.R453C	ENST00000373198	NM_133170.3	453	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112116577	112116577	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854583		P-0061786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	91	457	0	ENST00000257430.4:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000257430	NM_000038.5	208	Cag/Tag																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431404	121431404	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780357		P-0061786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	148	663	0	ENST00000257555.6:c.608G>A	p.Arg203His	p.R203H	ENST00000257555		203	cGt/cAt																																																																															
RET	5979	MSKCC	GRCh37	10	43620387	43620387	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	141	600	0	ENST00000355710.3:c.2996C>G	p.Ala999Gly	p.A999G	ENST00000355710	NM_020975.4	999	gCg/gGg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67358545	67358545	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0061786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	148	708	0	ENST00000327367.4:c.53G>A	p.Trp18Ter	p.W18*	ENST00000327367	NM_005902.3	18	tGg/tAg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576104	88576104	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	36	633	0	ENST00000360948.2:c.1569C>A	p.Cys523Ter	p.C523*	ENST00000360948	NM_001012338.2	523	tgC/tgA																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391832	139391832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061786-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			614	225	732	0	ENST00000277541.6:c.6359G>T	p.Arg2120Leu	p.R2120L	ENST00000277541	NM_017617.3	2120	cGc/cTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	137	564	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738411	145738416	+	inframe_deletion	In_Frame_Del	DEL	GGTGCA	GGTGCA	-	rs548804317		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	138	771	0	ENST00000428558.2:c.2569_2574del	p.Cys857_Thr858del	p.C857_T858del	ENST00000428558	NM_004260.3	857	TGCACC/-																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	150	729	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030314	180030314	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777755208		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	193	809	2	ENST00000261937.6:c.3970C>T	p.Arg1324Trp	p.R1324W	ENST00000261937	NM_182925.4	1324	Cgg/Tgg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	133	700	5	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	323	682	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26101090	26101090	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	138	446	0	ENST00000435504.4:c.2T>C	p.Met1?	p.M1?	ENST00000435504		1	aTg/aCg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	151	609	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413049	139413049	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064795070		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	144	576	0	ENST00000277541.6:c.1093C>T	p.Arg365Cys	p.R365C	ENST00000277541	NM_017617.3	365	Cgc/Tgc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931452	131931452	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772667708		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	165	508	17	ENST00000265335.6:c.2165del	p.Lys722ArgfsTer14	p.K722Rfs*14	ENST00000265335		719	ctA/ct																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78896587	78896587	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144632265		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	150	666	0	ENST00000306801.3:c.2584G>A	p.Ala862Thr	p.A862T	ENST00000306801	NM_020761.2	862	Gcc/Acc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	207	760	13	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
CDH1	999	MSKCC	GRCh37	16	68847400	68847400	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	14	558	0	ENST00000261769.5:c.1320+2T>G		p.X440_splice	ENST00000261769	NM_004360.3	440																																																																																
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	159	588	3	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721164	176721165	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	192	671	1	ENST00000439151.2:c.6801dup	p.Ala2268SerfsTer13	p.A2268Sfs*13	ENST00000439151	NM_022455.4	2265	-/A																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117594	70117594	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	197	737	0	ENST00000245479.2:c.66del	p.Ser23AlafsTer38	p.S23Afs*38	ENST00000245479	NM_000346.3	21	gCc/gc																																																																															
NBN	4683	MSKCC	GRCh37	8	90993676	90993676	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	121	367	0	ENST00000265433.3:c.247del	p.Met83CysfsTer9	p.M83Cfs*9	ENST00000265433	NM_002485.4	83	Atg/tg																																																																															
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	240	692	0	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513282	44513287	+	inframe_deletion	In_Frame_Del	DEL	CCACCG	CCACCG	-	rs769920981		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	164	591	1	ENST00000291552.4:c.648_653del	p.Gly222_Gly223del	p.G222_G223del	ENST00000291552	NM_006758.2	216	ggCGGTGGt/ggt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27022999	27022999	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1436957504		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	122	565	0	ENST00000324856.7:c.110del	p.Gly37AlafsTer14	p.G37Afs*14	ENST00000324856	NM_006015.4	35	gcG/gc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806171	1806171	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs542210035		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	192	762	0	ENST00000260795.2:c.1190G>A	p.Arg397His	p.R397H	ENST00000260795		397	cGc/cAc																																																																															
PGR	5241	MSKCC	GRCh37	11	100962530	100962530	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752817186		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	167	484	0	ENST00000325455.5:c.1867C>T	p.Arg623Cys	p.R623C	ENST00000325455	NM_001202474.3	623	Cgc/Tgc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1297203260		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	299	714	0	ENST00000245479.2:c.916del	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099468	157099470	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-	rs1429292576		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	168	775	0	ENST00000346085.5:c.413_415del	p.Asn138del	p.N138del	ENST00000346085	NM_020732.3	135	tcCAAc/tcc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412940	63412940	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	169	732	0	ENST00000330258.3:c.227del	p.Gly76AspfsTer24	p.G76Dfs*24	ENST00000330258	NM_152424.3	76	gGa/ga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692892	89692892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	110	365	0	ENST00000371953.3:c.376G>A	p.Ala126Thr	p.A126T	ENST00000371953	NM_000314.4	126	Gct/Act																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681120	117681120	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772514180		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	154	567	1	ENST00000368508.3:c.3500del	p.Leu1167Ter	p.L1167*	ENST00000368508	NM_002944.2	1167	tTa/ta																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349640	89349641	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs772267579		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	140	570	8	ENST00000301030.4:c.3309dup	p.Asp1104ArgfsTer2	p.D1104Rfs*2	ENST00000301030	NM_001256183.1	1103	-/A																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	149	737	5	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522693	67522693	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	206	583	0	ENST00000274335.5:c.193del	p.Glu65LysfsTer10	p.E65Kfs*10	ENST00000274335		64	Ggg/gg																																																																															
IRF4	3662	MSKCC	GRCh37	6	395001	395001	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1300046652		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	149	672	1	ENST00000380956.4:c.402del	p.Gly135GlufsTer14	p.G135Efs*14	ENST00000380956	NM_001195286.1	133	Aaa/aa																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625143	69625143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	82	660	0	ENST00000334134.2:c.650C>T	p.Pro217Leu	p.P217L	ENST00000334134	NM_005247.2	217	cCg/cTg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719526	61719526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	190	571	0	ENST00000401558.2:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000401558	NM_003400.3	553	Cgt/Tgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717719	89717720	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-	rs780264945		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	110	390	0	ENST00000371953.3:c.750_751del	p.Cys250TrpfsTer2	p.C250Wfs*2	ENST00000371953	NM_000314.4	248	ccTGtg/cctg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481659	56481659	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140656187		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	241	750	0	ENST00000267101.3:c.694G>A	p.Ala232Thr	p.A232T	ENST00000267101	NM_001982.3	232	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	119	837	0	ENST00000222270.7:c.520_521dup	p.Lys175GlnfsTer20	p.K175Qfs*20	ENST00000222270	NM_014727.1	172	acc/aCCcc																																																																															
CCND1	595	MSKCC	GRCh37	11	69457951	69457951	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	142	669	0	ENST00000227507.2:c.355del	p.Leu119Ter	p.L119*	ENST00000227507	NM_053056.2	117	atC/at																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226345	2226345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	189	820	0	ENST00000326181.6:c.1958G>A	p.Arg653Gln	p.R653Q	ENST00000326181	NM_032271.2	653	cGg/cAg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25466773	25466773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1431156021		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	147	618	0	ENST00000264709.3:c.1930G>A	p.Ala644Thr	p.A644T	ENST00000264709	NM_175629.2	644	Gct/Act																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553111	106553111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	206	798	0	ENST00000369096.4:c.1076C>T	p.Thr359Met	p.T359M	ENST00000369096	NM_001198.3	359	aCg/aTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492686	56492686	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	167	521	0	ENST00000407977.2:c.252+1G>A		p.X84_splice	ENST00000407977		84																																																																																
CDKN1A	1026	MSKCC	GRCh37	6	36652243	36652243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs558863376		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	180	624	2	ENST00000244741.5:c.365G>A	p.Arg122His	p.R122H	ENST00000244741	NM_000389.4	122	cGc/cAc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44515559	44515559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	165	586	0	ENST00000291552.4:c.337G>A	p.Val113Met	p.V113M	ENST00000291552	NM_006758.2	113	Gtg/Atg																																																																															
TET2	54790	MSKCC	GRCh37	4	106196745	106196745	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	29	646	0	ENST00000380013.4:c.5078A>G	p.Tyr1693Cys	p.Y1693C	ENST00000380013	NM_001127208.2	1693	tAc/tGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132781	152132781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	146	536	0	ENST00000262189.6:c.91G>A	p.Ala31Thr	p.A31T	ENST00000262189	NM_170606.2	31	Gcc/Acc																																																																															
AR	367	MSKCC	GRCh37	X	66941758	66941758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	89	526	3	ENST00000374690.3:c.2407del	p.Gln803ArgfsTer6	p.Q803Rfs*6	ENST00000374690	NM_000044.3	801	aCc/ac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779608	3779608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	205	878	0	ENST00000262367.5:c.5440G>A	p.Gly1814Arg	p.G1814R	ENST00000262367	NM_004380.2	1814	Ggg/Agg																																																																															
CBL	867	MSKCC	GRCh37	11	119103189	119103189	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757898729		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	187	612	0	ENST00000264033.4:c.227C>T	p.Ala76Val	p.A76V	ENST00000264033	NM_005188.3	76	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	112	449	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919785	50919785	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs780926432		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	179	813	1	ENST00000440232.2:c.2953C>T	p.Arg985Trp	p.R985W	ENST00000440232	NM_002691.3	985	Cgg/Tgg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	317	638	18	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
REST	5978	MSKCC	GRCh37	4	57796750	57796750	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1199978831		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	174	685	1	ENST00000309042.7:c.1732del	p.Ser578ValfsTer7	p.S578Vfs*7	ENST00000309042	NM_005612.4	576	Aaa/aa																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29279846	29279846	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			78	39	212	0	ENST00000544604.2:c.92del	p.Leu31ArgfsTer91	p.L31Rfs*91	ENST00000544604	NM_001206998.1	31	cTg/cg																																																																															
CDC42	998	MSKCC	GRCh37	1	22413187	22413187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	93	371	0	ENST00000344548.3:c.314G>A	p.Cys105Tyr	p.C105Y	ENST00000344548	NM_001039802.1	105	tGt/tAt																																																																															
APLNR	187	MSKCC	GRCh37	11	57003835	57003835	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs532639542		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	150	788	0	ENST00000257254.3:c.644C>T	p.Thr215Ile	p.T215I	ENST00000257254		215	aCc/aTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373227	118373227	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782109378		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	191	644	0	ENST00000534358.1:c.6620G>A	p.Arg2207Gln	p.R2207Q	ENST00000534358	NM_005933.3	2207	cGg/cAg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376371	118376371	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	197	778	0	ENST00000534358.1:c.9764T>C	p.Met3255Thr	p.M3255T	ENST00000534358	NM_005933.3	3255	aTg/aCg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81888141	81888141	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	172	618	0	ENST00000359376.3:c.286T>G	p.Phe96Val	p.F96V	ENST00000359376	NM_002661.3	96	Ttc/Gtc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15960830	15960831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	156	461	0	ENST00000268712.3:c.6389dup	p.Ser2131LysfsTer2	p.S2131Kfs*2	ENST00000268712	NM_006311.3	2130	gga/ggGa																																																																															
NF1	4763	MSKCC	GRCh37	17	29701094	29701094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	218	555	0	ENST00000358273.4:c.8441G>A	p.Arg2814His	p.R2814H	ENST00000358273	NM_001042492.2	2814	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492775	56492776	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	214	631	0	ENST00000407977.2:c.163dup	p.Met55AsnfsTer20	p.M55Nfs*20	ENST00000407977		55	atg/aAtg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29439321	29439321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	155	602	0	ENST00000544604.2:c.536C>T	p.Pro179Leu	p.P179L	ENST00000544604	NM_001206998.1	179	cCg/cTg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446652	29446652	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs557631529		P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	164	755	4	ENST00000544604.2:c.2483G>A	p.Arg828His	p.R828H	ENST00000544604	NM_001206998.1	828	cGc/cAc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513526	149513526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	193	689	0	ENST00000261799.4:c.677G>A	p.Arg226His	p.R226H	ENST00000261799	NM_002609.3	226	cGc/cAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562163	176562163	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	35	660	0	ENST00000439151.2:c.59T>C	p.Val20Ala	p.V20A	ENST00000439151	NM_022455.4	20	gTg/gCg																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983274	149983274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	175	624	0	ENST00000253339.5:c.2984G>A	p.Arg995His	p.R995H	ENST00000253339		995	cGc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157470004	157470004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	148	743	1	ENST00000346085.5:c.2798C>T	p.Pro933Leu	p.P933L	ENST00000346085	NM_020732.3	933	cCg/cTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106524613	106524613	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	139	446	0	ENST00000359195.3:c.2774T>C	p.Val925Ala	p.V925A	ENST00000359195	NM_002649.2	925	gTg/gCg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781044	135781050	+	frameshift_variant	Frame_Shift_Del	DEL	GCACACC	GCACACC	-			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	168	587	0	ENST00000298552.3:c.1915_1921del	p.Gly639ProfsTer12	p.G639Pfs*12	ENST00000298552	NM_001162426.1	639	GGTGTGCcc/cc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918300	44918300	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061788-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	91	389	0	ENST00000377967.4:c.925C>T	p.Gln309Ter	p.Q309*	ENST00000377967	NM_021140.2	309	Cag/Tag																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346338	73346338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	40	494	0	ENST00000377767.4:c.1462G>A	p.Asp488Asn	p.D488N	ENST00000377767	NM_014953.3	488	Gat/Aat																																																																															
STK11	6794	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs878853247		P-0061791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	83	718	0	ENST00000326873.7:c.709G>T	p.Asp237Tyr	p.D237Y	ENST00000326873	NM_000455.4	237	Gac/Tac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602341	10602341	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1178941219		P-0061791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	96	842	0	ENST00000171111.5:c.1237C>T	p.Arg413Cys	p.R413C	ENST00000171111	NM_203500.1	413	Cgt/Tgt																																																																															
ATRX	546	MSKCC	GRCh37	X	76777866	76777866	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0061791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	51	305	0	ENST00000373344.5:c.6850G>T	p.Gly2284Ter	p.G2284*	ENST00000373344	NM_000489.3	2284	Gga/Tga																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637248	47637248	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs145649774		P-0061791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	58	490	0	ENST00000233146.2:c.382C>G	p.Leu128Val	p.L128V	ENST00000233146	NM_000251.2	128	Ctc/Gtc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123215341	123215341	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	44	199	0	ENST00000218089.9:c.2887C>T	p.Gln963Ter	p.Q963*	ENST00000218089	NM_001042749.1	963	Cag/Tag																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690426	33690426	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376084054		P-0061791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	90	612	0	ENST00000308377.4:c.401G>A	p.Arg134His	p.R134H	ENST00000308377	NM_152270.3	134	cGt/cAt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78923308	78923308	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	132	588	0	ENST00000306801.3:c.3331G>T	p.Ala1111Ser	p.A1111S	ENST00000306801	NM_020761.2	1111	Gcg/Tcg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47707957	47707957	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63750291		P-0061791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	53	485	0	ENST00000233146.2:c.2581C>T	p.Gln861Ter	p.Q861*	ENST00000233146	NM_000251.2	861	Caa/Taa																																																																															
BARD1	580	MSKCC	GRCh37	2	215632380	215632380	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0061791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	64	418	0	ENST00000260947.4:c.1396-2A>T		p.X466_splice	ENST00000260947	NM_000465.2	466																																																																																
KDR	3791	MSKCC	GRCh37	4	55971107	55971107	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0061791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	71	525	0	ENST00000263923.4:c.1690C>T	p.Gln564Ter	p.Q564*	ENST00000263923	NM_002253.2	564	Cag/Tag																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910666	29910666	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0061791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			826	222	1261	0	ENST00000376809.5:c.206T>G	p.Met69Arg	p.M69R	ENST00000376809	NM_002116.7	69	aTg/aGg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169268	32169268	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0061791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	142	635	0	ENST00000375023.3:c.3765T>G	p.Tyr1255Ter	p.Y1255*	ENST00000375023	NM_004557.3	1255	taT/taG																																																																															
EZH2	2146	MSKCC	GRCh37	7	148523558	148523558	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0061791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	52	445	0	ENST00000320356.2:c.895A>T	p.Lys299Ter	p.K299*	ENST00000320356	NM_004456.4	299	Aag/Tag																																																																															
RAD21	5885	MSKCC	GRCh37	8	117875489	117875489	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061791-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	62	541	0	ENST00000297338.2:c.154G>T	p.Ala52Ser	p.A52S	ENST00000297338	NM_006265.2	52	Gca/Tca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260749	16260749	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769855469		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			943	161	914	2	ENST00000375759.3:c.8014G>A	p.Val2672Met	p.V2672M	ENST00000375759	NM_015001.2	2672	Gtg/Atg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087885	27087885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	48	584	0	ENST00000324856.7:c.2172G>A	p.Met724Ile	p.M724I	ENST00000324856	NM_006015.4	724	atG/atA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			771	211	778	0	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs769210858		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			741	201	742	3	ENST00000361632.4:c.1404del	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937710	36937710	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369185176		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			854	131	773	0	ENST00000361632.4:c.1028G>A	p.Arg343Gln	p.R343Q	ENST00000361632		343	cGg/cAg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726529	46726529	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			758	168	786	0	ENST00000371975.4:c.608A>G	p.Gln203Arg	p.Q203R	ENST00000371975	NM_003579.3	203	cAg/cGg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846342	156846342	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			823	57	768	0	ENST00000524377.1:c.1786del	p.Asp596ThrfsTer62	p.D596Tfs*62	ENST00000524377	NM_002529.3	595	Ggg/gg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851354	156851354	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1324983370		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			976	81	912	1	ENST00000524377.1:c.2311C>T	p.Arg771Cys	p.R771C	ENST00000524377	NM_002529.3	771	Cgc/Tgc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193117070	193117070	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750706815		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	42	433	0	ENST00000367435.3:c.803G>A	p.Arg268Gln	p.R268Q	ENST00000367435	NM_024529.4	268	cGa/cAa																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206664154	206664154	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	143	505	0	ENST00000367120.3:c.1696C>T	p.Leu566Phe	p.L566F	ENST00000367120	NM_014002.3	566	Ctt/Ttt																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230459181	230459181	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138064546		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	209	667	0	ENST00000525115.1:c.1358C>T	p.Pro453Leu	p.P453L	ENST00000525115		453	cCg/cTg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828162	243828162	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1399248274		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	75	341	0	ENST00000263826.5:c.196C>T	p.Arg66Ter	p.R66*	ENST00000263826	NM_005465.4	66	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	50	351	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925412	114925412	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs573425555		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	105	580	1	ENST00000543371.1:c.1490C>T	p.Pro497Leu	p.P497L	ENST00000543371	NM_001198531.1	497	cCg/cTg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123298133	123298133	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1313917697		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	122	637	0	ENST00000358487.5:c.721A>G	p.Asn241Asp	p.N241D	ENST00000358487	NM_000141.4	241	Aat/Gat																																																																															
HRAS	3265	MSKCC	GRCh37	11	534288	534288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894230		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	262	742	0	ENST00000311189.7:c.35G>A	p.Gly12Asp	p.G12D	ENST00000311189		12	gGc/gAc																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518640	69518640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	46	613	0	ENST00000294312.3:c.5G>A	p.Arg2Gln	p.R2Q	ENST00000294312	NM_005117.2	2	cGg/cAg																																																																															
SESN3	143686	MSKCC	GRCh37	11	94908705	94908705	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs547426358		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	61	419	0	ENST00000536441.1:c.1349G>A	p.Arg450His	p.R450H	ENST00000536441	NM_144665.3	450	cGc/cAc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998685	100998685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			801	150	776	0	ENST00000325455.5:c.1117G>A	p.Ala373Thr	p.A373T	ENST00000325455	NM_001202474.3	373	Gcg/Acg																																																																															
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	37	388	0	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																															
ATM	472	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781894		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	101	591	0	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118367017	118367017	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	72	433	1	ENST00000534358.1:c.5603del	p.Pro1868GlnfsTer3	p.P1868Qfs*3	ENST00000534358	NM_005933.3	1867	Ccc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434054	49434054	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369604891		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1004	97	865	0	ENST00000301067.7:c.7499C>T	p.Ala2500Val	p.A2500V	ENST00000301067	NM_003482.3	2500	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1025	72	923	2	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446070	49446070	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201512665		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1042	161	1000	0	ENST00000301067.7:c.1396C>T	p.Arg466Cys	p.R466C	ENST00000301067	NM_003482.3	466	Cgc/Tgc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482369	56482369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	156	541	1	ENST00000267101.3:c.917C>A	p.Pro306His	p.P306H	ENST00000267101	NM_001982.3	306	cCt/cAt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495714	56495715	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			858	48	615	0	ENST00000267101.3:c.3910dup	p.His1304ProfsTer12	p.H1304Pfs*12	ENST00000267101	NM_001982.3	1302	gcc/gCcc																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145091	58145091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759017803		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			885	97	699	0	ENST00000257904.6:c.253C>T	p.Arg85Trp	p.R85W	ENST00000257904	NM_000075.3	85	Cgg/Tgg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432117	121432118	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs751449138		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			791	313	781	16	ENST00000257555.6:c.872dup	p.Gly292ArgfsTer25	p.G292Rfs*25	ENST00000257555		288	-/C																																																																															
POLE	5426	MSKCC	GRCh37	12	133219578	133219578	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376530977		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			845	94	728	0	ENST00000320574.5:c.4556G>A	p.Arg1519His	p.R1519H	ENST00000320574	NM_006231.2	1519	cGc/cAc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28597587	28597588	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	39	402	0	ENST00000241453.7:c.2317dup	p.Arg773LysfsTer14	p.R773Kfs*14	ENST00000241453	NM_004119.2	773	agg/aAgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	85	464	0	ENST00000380152.3:c.5351del	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240138	41240138	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1323268054		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	85	605	0	ENST00000379561.5:c.212T>C	p.Met71Thr	p.M71T	ENST00000379561	NM_002015.3	71	aTg/aCg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	150	512	7	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435493	110435493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			784	258	818	0	ENST00000375856.3:c.2908C>T	p.Arg970Trp	p.R970W	ENST00000375856	NM_003749.2	970	Cgg/Tgg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437106	110437106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			752	141	726	0	ENST00000375856.3:c.1295C>T	p.Ser432Phe	p.S432F	ENST00000375856	NM_003749.2	432	tCc/tTc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582875	95582875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	65	446	0	ENST00000343455.3:c.1667C>A	p.Pro556His	p.P556H	ENST00000343455	NM_177438.2	556	cCc/cAc																																																																															
AKT1	207	MSKCC	GRCh37	14	105241276	105241276	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	199	782	0	ENST00000349310.3:c.632C>T	p.Thr211Ile	p.T211I	ENST00000349310	NM_001014432.1	211	aCa/aTa																																																																															
MGA	23269	MSKCC	GRCh37	15	42053990	42053991	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	40	379	0	ENST00000219905.7:c.7457dup	p.Asn2486LysfsTer20	p.N2486Kfs*20	ENST00000219905	NM_001164273.1	2484	-/A																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701242	43701242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368366606		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	139	534	0	ENST00000382044.4:c.5453G>A	p.Arg1818Gln	p.R1818Q	ENST00000382044	NM_001141980.1	1818	cGg/cAg																																																																															
USP8	9101	MSKCC	GRCh37	15	50733660	50733661	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	32	332	0	ENST00000307179.4:c.226dup	p.Arg76LysfsTer3	p.R76Kfs*3	ENST00000307179		73	-/A																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88669547	88669547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56394626		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	112	436	0	ENST00000360948.2:c.1351G>A	p.Val451Ile	p.V451I	ENST00000360948	NM_001012338.2	451	Gtc/Atc																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2097710	2097710	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	131	682	0	ENST00000219066.1:c.139G>T	p.Glu47Ter	p.E47*	ENST00000219066	NM_002528.5	47	Gaa/Taa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778282	3778282	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1068	85	932	0	ENST00000262367.5:c.6766del	p.Leu2256SerfsTer46	p.L2256Sfs*46	ENST00000262367	NM_004380.2	2256	Ctc/tc																																																																															
CDH1	999	MSKCC	GRCh37	16	68772234	68772234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	116	652	0	ENST00000261769.5:c.83G>A	p.Cys28Tyr	p.C28Y	ENST00000261769	NM_004360.3	28	tGc/tAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830441	72830441	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	113	405	0	ENST00000268489.5:c.6140del	p.Pro2047LeufsTer54	p.P2047Lfs*54	ENST00000268489	NM_006885.3	2047	cCt/ct																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			860	81	777	2	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944264	81944264	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1009796025		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			745	90	640	1	ENST00000359376.3:c.1873G>A	p.Ala625Thr	p.A625T	ENST00000359376	NM_002661.3	625	Gcc/Acc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89355072	89355072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			813	60	705	1	ENST00000301030.4:c.608C>T	p.Thr203Met	p.T203M	ENST00000301030	NM_001256183.1	203	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	190	586	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16062109	16062109	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1373145988		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	93	468	0	ENST00000268712.3:c.697C>T	p.Arg233Cys	p.R233C	ENST00000268712	NM_006311.3	233	Cgc/Tgc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1050	67	939	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			888	389	923	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435689	56435689	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779655071		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			712	264	810	0	ENST00000407977.2:c.1448C>T	p.Thr483Met	p.T483M	ENST00000407977		483	aCg/aTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436128	56436128	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			797	131	717	0	ENST00000407977.2:c.1009C>T	p.Arg337Ter	p.R337*	ENST00000407977		337	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			810	152	763	1	ENST00000407977.2:c.349del	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45423102	45423102	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749758342		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	120	544	0	ENST00000262160.6:c.26C>T	p.Pro9Leu	p.P9L	ENST00000262160	NM_005901.5	9	cCg/cTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226767	2226767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			915	129	947	0	ENST00000398665.3:c.4247G>A	p.Arg1416His	p.R1416H	ENST00000398665	NM_032482.2	1416	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212370	5212370	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777981018		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			733	237	919	0	ENST00000357368.4:c.4747G>A	p.Gly1583Ser	p.G1583S	ENST00000357368	NM_002850.3	1583	Ggc/Agc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223017	5223017	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1313647555		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			906	99	920	0	ENST00000357368.4:c.2786G>A	p.Arg929His	p.R929H	ENST00000357368	NM_002850.3	929	cGt/cAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274290	5274290	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368676720		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			691	103	704	0	ENST00000357368.4:c.157G>A	p.Val53Met	p.V53M	ENST00000357368	NM_002850.3	53	Gtg/Atg																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6213976	6213976	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	112	710	0	ENST00000252674.7:c.1381del	p.Gln461ArgfsTer46	p.Q461Rfs*46	ENST00000252674	NM_005934.3	461	Cag/ag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238758086		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			951	73	920	1	ENST00000358026.2:c.2729C>T	p.Thr910Met	p.T910M	ENST00000358026	NM_001128849.1	910	aCg/aTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302276	15302276	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774985086		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			725	116	670	0	ENST00000263388.2:c.995G>A	p.Arg332His	p.R332H	ENST00000263388	NM_000435.2	332	cGc/cAc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257365	19257366	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			831	112	817	2	ENST00000162023.5:c.767dup	p.Glu257ArgfsTer28	p.E257Rfs*28	ENST00000162023		256	cca/ccCa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220916	36220918	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	216	737	0	ENST00000222270.7:c.4970_4972del	p.Ser1657del	p.S1657del	ENST00000222270	NM_014727.1	1656	TCC/-																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228998	36228998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			769	235	850	0	ENST00000222270.7:c.7778G>A	p.Arg2593His	p.R2593H	ENST00000222270	NM_014727.1	2593	cGc/cAc																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	80	367	3	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503884	47503884	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			758	45	608	0	ENST00000404338.3:c.4444del	p.Gln1482SerfsTer317	p.Q1482Sfs*317	ENST00000404338	NM_004491.4	1480	aCc/ac																																																																															
POLD1	5424	MSKCC	GRCh37	19	50920350	50920352	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	AGG	AGG	-			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			829	83	744	0	ENST00000440232.2:c.3119_3120+1del		p.KEdel	ENST00000440232	NM_002691.3	1039	aAGGag/aag																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46574157	46574157	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			897	58	704	2	ENST00000263734.3:c.172C>T	p.Arg58Ter	p.R58*	ENST00000263734	NM_001430.4	58	Cga/Tga																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	275	646	10	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																															
BARD1	580	MSKCC	GRCh37	2	215646000	215646000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	36	591	0	ENST00000260947.4:c.598G>A	p.Ala200Thr	p.A200T	ENST00000260947	NM_000465.2	200	Gca/Aca																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			903	88	817	1	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			827	188	891	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31376801	31376801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	218	693	0	ENST00000328111.2:c.796G>A	p.Asp266Asn	p.D266N	ENST00000328111	NM_006892.3	266	Gat/Aat																																																																															
SRC	6714	MSKCC	GRCh37	20	36022324	36022324	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760138531		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	237	734	0	ENST00000358208.4:c.377C>T	p.Ser126Leu	p.S126L	ENST00000358208		126	tCg/tTg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265436	46265436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	91	528	0	ENST00000371998.3:c.2306G>A	p.Cys769Tyr	p.C769Y	ENST00000371998		769	tGc/tAc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	62	588	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
NF2	4771	MSKCC	GRCh37	22	30070868	30070868	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771143279		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	86	523	0	ENST00000338641.4:c.1384C>T	p.Arg462Cys	p.R462C	ENST00000338641	NM_000268.3	462	Cgc/Tgc																																																																															
EP300	2033	MSKCC	GRCh37	22	41573534	41573534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			882	151	831	0	ENST00000263253.7:c.5819G>A	p.Arg1940His	p.R1940H	ENST00000263253	NM_001429.3	1940	cGc/cAc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	109	566	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070324	37070324	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63749795		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	91	524	0	ENST00000231790.2:c.1459C>T	p.Arg487Ter	p.R487*	ENST00000231790	NM_000249.3	487	Cga/Tga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			658	64	590	1	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165213	47165213	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	117	508	0	ENST00000409792.3:c.913del	p.Thr305GlnfsTer35	p.T305Qfs*35	ENST00000409792	NM_014159.6	305	Aca/ca																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165918	47165918	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs775039657		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	104	559	0	ENST00000409792.3:c.208C>T	p.Arg70Ter	p.R70*	ENST00000409792	NM_014159.6	70	Cga/Tga																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71090563	71090565	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-	rs751098424		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	85	550	0	ENST00000318789.4:c.783_785del	p.Ser262del	p.S262del	ENST00000318789	NM_032682.5	261	tcCTCt/tct																																																																															
ATR	545	MSKCC	GRCh37	3	142261555	142261555	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	25	364	0	ENST00000350721.4:c.3402del	p.Phe1134LeufsTer6	p.F1134Lfs*6	ENST00000350721	NM_001184.3	1134	ttT/tt																																																																															
ATR	545	MSKCC	GRCh37	3	142281647	142281647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	58	418	0	ENST00000350721.4:c.597G>A	p.Met199Ile	p.M199I	ENST00000350721	NM_001184.3	199	atG/atA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	10	433	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803120	1803120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1162571458		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	200	758	0	ENST00000260795.2:c.472C>T	p.Arg158Trp	p.R158W	ENST00000260795		158	Cgg/Tgg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			862	152	891	5	ENST00000382895.3:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382895	NM_133330.2	1341	Ccc/cc																																																																															
REST	5978	MSKCC	GRCh37	4	57798086	57798088	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	139	487	0	ENST00000309042.7:c.3065_3067del	p.Asn1022del	p.N1022del	ENST00000309042	NM_005612.4	1021	gACAac/gac																																																																															
TET2	54790	MSKCC	GRCh37	4	106164862	106164863	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs1428898350		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	34	511	0	ENST00000380013.4:c.3732_3733del	p.Tyr1245LeufsTer22	p.Y1245Lfs*22	ENST00000380013	NM_001127208.2	1244	CTc/c																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			722	109	758	1	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	39	440	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38954947	38954947	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771642192		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	40	338	0	ENST00000357387.3:c.2626G>A	p.Val876Ile	p.V876I	ENST00000357387	NM_152756.3	876	Gtc/Atc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638492	176638492	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780306768		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			782	106	698	0	ENST00000439151.2:c.3092G>A	p.Arg1031Gln	p.R1031Q	ENST00000439151	NM_022455.4	1031	cGa/cAa																																																																															
IRF4	3662	MSKCC	GRCh37	6	395876	395876	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	74	640	0	ENST00000380956.4:c.433C>T	p.Gln145Ter	p.Q145*	ENST00000380956	NM_001195286.1	145	Cag/Tag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165128	32165128	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			923	52	773	0	ENST00000375023.3:c.5000G>T	p.Gly1667Val	p.G1667V	ENST00000375023	NM_004557.3	1667	gGg/gTg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287299	33287299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			784	127	771	0	ENST00000374542.5:c.1798G>A	p.Val600Ile	p.V600I	ENST00000374542	NM_001141970.1	600	Gtc/Atc																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43748585	43748586	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs756384978		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			770	210	699	0	ENST00000523873.1:c.544dup	p.His182ProfsTer22	p.H182Pfs*22	ENST00000523873		180	ggc/ggCc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93973580	93973580	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	37	299	0	ENST00000369303.4:c.1796A>T	p.His599Leu	p.H599L	ENST00000369303	NM_004440.3	599	cAt/cTt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004720	150004720	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772839695		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			787	66	660	0	ENST00000253339.5:c.1505G>A	p.Arg502His	p.R502H	ENST00000253339		502	cGt/cAt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099403	157099408	+	inframe_deletion	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	rs1433300399		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1126	136	1018	0	ENST00000346085.5:c.357_362del	p.Gln130_Gln131del	p.Q130_Q131del	ENST00000346085	NM_020732.3	114	CAGCAG/-																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522598	157522598	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	34	497	0	ENST00000346085.5:c.4870C>T	p.Arg1624Ter	p.R1624*	ENST00000346085	NM_020732.3	1624	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959058	2959058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147840048		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	212	723	0	ENST00000396946.4:c.2458G>A	p.Asp820Asn	p.D820N	ENST00000396946	NM_032415.4	820	Gac/Aac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2974227	2974227	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			625	102	629	0	ENST00000396946.4:c.1378C>T	p.Gln460Ter	p.Q460*	ENST00000396946	NM_032415.4	460	Cag/Tag																																																																															
ETV1	2115	MSKCC	GRCh37	7	13940435	13940436	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	141	389	0	ENST00000405192.2:c.1070dup	p.Asn357LysfsTer8	p.N357Kfs*8	ENST00000405192	NM_001163147.1	357	aac/aaAc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729606	41729606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	227	822	0	ENST00000242208.4:c.923G>A	p.Arg308His	p.R308H	ENST00000242208	NM_002192.2	308	cGt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55260517	55260517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	36	300	0	ENST00000275493.2:c.2684G>A	p.Ser895Asn	p.S895N	ENST00000275493	NM_005228.3	895	aGt/aAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140501350	140501350	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906660		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	33	329	0	ENST00000288602.6:c.722C>T	p.Thr241Met	p.T241M	ENST00000288602	NM_004333.4	241	aCg/aTg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148511064	148511064	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs561605379		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	77	464	0	ENST00000320356.2:c.1838G>A	p.Arg613Gln	p.R613Q	ENST00000320356	NM_004456.4	613	cGg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853400	151853400	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	40	523	0	ENST00000262189.6:c.11702del	p.Pro3901LeufsTer33	p.P3901Lfs*33	ENST00000262189	NM_170606.2	3901	cCt/ct																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012225	152012226	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	127	408	0	ENST00000262189.6:c.587_588del	p.Arg196LysfsTer23	p.R196Kfs*23	ENST00000262189	NM_170606.2	196	aGA/a																																																																															
PREX2	80243	MSKCC	GRCh37	8	69058536	69058536	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61753703		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	68	424	0	ENST00000288368.4:c.4180C>T	p.Arg1394Trp	p.R1394W	ENST00000288368	NM_024870.2	1394	Cgg/Tgg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87475996	87475996	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	38	438	0	ENST00000277120.3:c.1438G>T	p.Gly480Cys	p.G480C	ENST00000277120		480	Ggt/Tgt																																																																															
FANCC	2176	MSKCC	GRCh37	9	97869475	97869475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149917017		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			712	125	679	0	ENST00000289081.3:c.1406C>T	p.Thr469Met	p.T469M	ENST00000289081	NM_000136.2	469	aCg/aTg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111854391		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	78	461	0	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797351	135797351	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777484049		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	154	520	0	ENST00000298552.3:c.518C>T	p.Ala173Val	p.A173V	ENST00000298552	NM_001162426.1	173	gCg/gTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39930298	39930298	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	102	582	0	ENST00000378444.4:c.3166G>T	p.Gly1056Ter	p.G1056*	ENST00000378444	NM_001123385.1	1056	Gga/Tga																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933575	39933575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs151177114		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			873	90	895	1	ENST00000378444.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000378444	NM_001123385.1	342	Cga/Tga																																																																															
BCOR	54880	MSKCC	GRCh37	X	39937104	39937104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	75	501	0	ENST00000378444.4:c.79G>A	p.Glu27Lys	p.E27K	ENST00000378444	NM_001123385.1	27	Gaa/Aaa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123181290	123181290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	41	384	0	ENST00000218089.9:c.754C>T	p.Arg252Trp	p.R252W	ENST00000218089	NM_001042749.1	252	Cgg/Tgg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0061795-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	131	678	2	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859015	57859015	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776846382		P-0061800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	65	640	0	ENST00000228682.2:c.511C>T	p.Arg171Trp	p.R171W	ENST00000228682	NM_005269.2	171	Cgg/Tgg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46240721	46240722	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0061800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	104	311	0	ENST00000334344.6:c.1580+2dup		p.X527_splice	ENST00000334344	NM_152641.2	527																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0061800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	40	307	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0061800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	52	241	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993287	72993287	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	55	839	0	ENST00000268489.5:c.758G>T	p.Ser253Ile	p.S253I	ENST00000268489	NM_006885.3	253	aGc/aTc																																																																															
APC	324	MSKCC	GRCh37	5	112174529	112174530	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0061800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	135	533	0	ENST00000257430.4:c.3241_3242del	p.Ser1081HisfsTer2	p.S1081Hfs*2	ENST00000257430	NM_000038.5	1080	GAg/g																																																																															
APC	324	MSKCC	GRCh37	5	112175148	112175149	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0061800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	126	519	0	ENST00000257430.4:c.3858_3859del	p.Glu1286AspfsTer4	p.E1286Dfs*4	ENST00000257430	NM_000038.5	1286	gAA/g																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27777966	27777966	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			877	311	1122	0	ENST00000369163.2:c.118del	p.His40IlefsTer23	p.H40Ifs*23	ENST00000369163	NM_003536.2	39	Ccc/cc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057057	180057057	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372854098		P-0061802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	81	871	1	ENST00000261937.6:c.562C>T	p.Arg188Trp	p.R188W	ENST00000261937	NM_182925.4	188	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0061802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	87	751	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552822		P-0061802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	103	960	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246670393	246670393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	69	700	0	ENST00000388985.4:c.127G>A	p.Gly43Arg	p.G43R	ENST00000388985		43	Ggg/Agg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348058	89348058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs886568838		P-0061802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	85	795	0	ENST00000301030.4:c.4892G>A	p.Arg1631Gln	p.R1631Q	ENST00000301030	NM_001256183.1	1631	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0061802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	182	376	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135798758	135798758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	71	428	0	ENST00000298552.3:c.485C>T	p.Ser162Leu	p.S162L	ENST00000298552	NM_001162426.1	162	tCa/tTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0061803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	83	442	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376149	225376149	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061803-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	38	372	0	ENST00000264414.4:c.805A>G	p.Ile269Val	p.I269V	ENST00000264414	NM_003590.4	269	Att/Gtt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970899	21970899	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0061804-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	166	735	0	ENST00000304494.5:c.457+2T>G		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																																
DIS3	22894	MSKCC	GRCh37	13	73346916	73346916	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0061804-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			66	110	450	0	ENST00000377767.4:c.1301T>G	p.Leu434Ter	p.L434*	ENST00000377767	NM_014953.3	434	tTa/tGa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115773	8115852	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACA	AAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACA	GGAGGACATGTGTCTGGAGAGGGCGGC			P-0061864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	209	604	3	ENST00000346208.3:c.1119_1198delinsGGAGGACATGTGTCTGGAGAGGGCGGC	p.Lys374GlufsTer115	p.K374Efs*115	ENST00000346208		373	aaAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACAtg/aaGGAGGACATGTGTCTGGAGAGGGCGGCtg																																																																															
RB1	5925	MSKCC	GRCh37	13	48954202	48954205	+	frameshift_variant	Frame_Shift_Del	DEL	TATC	TATC	-			P-0061864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	48	137	0	ENST00000267163.4:c.1403_1406del	p.Leu468SerfsTer9	p.L468Sfs*9	ENST00000267163	NM_000321.2	468	tTATCc/tc																																																																															
BCL6	604	MSKCC	GRCh37	3	187447220	187447220	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749366850		P-0061864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			865	352	653	0	ENST00000232014.4:c.973C>T	p.Arg325Trp	p.R325W	ENST00000232014	NM_001130845.1	325	Cgg/Tgg																																																																															
KIT	3815	MSKCC	GRCh37	4	55524200	55524200	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1285711357		P-0061864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	209	458	1	ENST00000288135.5:c.19G>A	p.Ala7Thr	p.A7T	ENST00000288135	NM_000222.2	7	Gcc/Acc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178459	56178460	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0061864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	197	429	0	ENST00000399503.3:c.3433dup	p.Thr1145AsnfsTer6	p.T1145Nfs*6	ENST00000399503	NM_005921.1	1144	-/A																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419921	152419922	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0061864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	261	528	0	ENST00000206249.3:c.1608_1609delinsAA	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	536	ctCTat/ctAAat																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509660	106509660	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757849968		P-0061864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	282	542	0	ENST00000359195.3:c.1654C>T	p.Arg552Cys	p.R552C	ENST00000359195	NM_002649.2	552	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1138	41	850	0	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112174758	112174761	+	frameshift_variant	Frame_Shift_Del	DEL	AAGA	AAGA	-			P-0061865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	213	550	0	ENST00000257430.4:c.3467_3470del	p.Glu1156GlyfsTer8	p.E1156Gfs*8	ENST00000257430	NM_000038.5	1156	gAAGAg/gg																																																																															
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	254	667	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			959	178	826	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																															
MED12	9968	MSKCC	GRCh37	X	70356251	70356251	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			972	121	684	0	ENST00000374080.3:c.5146C>T	p.Arg1716Ter	p.R1716*	ENST00000374080		1716	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519895		P-0061865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	199	479	0	ENST00000281708.4:c.1394G>T	p.Arg465Leu	p.R465L	ENST00000281708	NM_033632.3	465	cGt/cTt																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239627	31239627	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs281860326		P-0061865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	161	212	0	ENST00000376228.5:c.92A>G	p.Tyr31Cys	p.Y31C	ENST00000376228	NM_002117.5	31	tAt/tGt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740379	145740379	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs555407951		P-0061865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1059	125	762	0	ENST00000428558.2:c.1561C>T	p.Arg521Trp	p.R521W	ENST00000428558	NM_004260.3	521	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0061865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	226	364	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2227114	2227114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061865-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			801	126	614	0	ENST00000398665.3:c.4594G>A	p.Gly1532Ser	p.G1532S	ENST00000398665	NM_032482.2	1532	Ggc/Agc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597401	10597401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	176	620	0	ENST00000171111.5:c.1802G>T	p.Arg601Leu	p.R601L	ENST00000171111	NM_203500.1	601	cGg/cTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207198	1207198	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0061867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	107	576	0	ENST00000326873.7:c.286A>T	p.Lys96Ter	p.K96*	ENST00000326873	NM_000455.4	96	Aag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0061867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	89	398	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61310688	61310688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	124	442	0	ENST00000341074.5:c.124C>A	p.Leu42Ile	p.L42I	ENST00000341074	NM_002974.2	42	Ctc/Atc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000514-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	167	240	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0000514-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	140	311	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68771321	68771321	+	start_lost	Translation_Start_Site	SNP	G	G	A	rs878854691		P-0000514-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			72	102	156	0	ENST00000261769.5:c.3G>A	p.Met1?	p.M1?	ENST00000261769	NM_004360.3	1	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	139	462	0	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
CARD11	84433	MSKCC	GRCh37	7	2962834	2962834	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778151		P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	51	515	0	ENST00000396946.4:c.2074G>A	p.Val692Met	p.V692M	ENST00000396946	NM_032415.4	692	Gtg/Atg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475063	40475063	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1096	104	641	0	ENST00000264657.5:c.1847A>G	p.Glu616Gly	p.E616G	ENST00000264657	NM_139276.2	616	gAa/gGa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212495239	212495239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	161	414	0	ENST00000342788.4:c.2027G>T	p.Arg676Ile	p.R676I	ENST00000342788	NM_005235.2	676	aGa/aTa																																																																															
CUL3	8452	MSKCC	GRCh37	2	225370719	225370719	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	181	410	0	ENST00000264414.4:c.1160A>T	p.Tyr387Phe	p.Y387F	ENST00000264414	NM_003590.4	387	tAc/tTc																																																																															
KDR	3791	MSKCC	GRCh37	4	55972913	55972913	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	57	412	1	ENST00000263923.4:c.1477G>T	p.Gly493Ter	p.G493*	ENST00000263923	NM_002253.2	493	Gga/Tga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56171080	56171080	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	72	324	0	ENST00000399503.3:c.1908C>G	p.Cys636Trp	p.C636W	ENST00000399503	NM_005921.1	636	tgC/tgG																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289543	33289543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	105	402	0	ENST00000374542.5:c.160G>T	p.Gly54Cys	p.G54C	ENST00000374542	NM_001141970.1	54	Ggc/Tgc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609870	117609870	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1406518415		P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	58	557	0	ENST00000368508.3:c.6829C>G	p.Leu2277Val	p.L2277V	ENST00000368508	NM_002944.2	2277	Ctt/Gtt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730031	41730031	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1244	162	802	0	ENST00000242208.4:c.498G>C	p.Arg166Ser	p.R166S	ENST00000242208	NM_002192.2	166	agG/agC																																																																															
CDK6	1021	MSKCC	GRCh37	7	92354968	92354968	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	116	371	0	ENST00000265734.4:c.509A>G	p.Tyr170Cys	p.Y170C	ENST00000265734	NM_001259.6	170	tAt/tGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151932979	151932979	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	17	52	0	ENST00000262189.6:c.2692G>C	p.Gly898Arg	p.G898R	ENST00000262189	NM_170606.2	898	Ggt/Cgt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852044	63852044	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	40	297	0	ENST00000279873.7:c.2822A>C	p.Gln941Pro	p.Q941P	ENST00000279873	NM_032199.2	941	cAg/cCg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852655	63852655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	108	370	0	ENST00000279873.7:c.3433G>T	p.Ala1145Ser	p.A1145S	ENST00000279873	NM_032199.2	1145	Gct/Tct																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88659795	88659795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	34	314	0	ENST00000372037.3:c.442G>A	p.Asp148Asn	p.D148N	ENST00000372037	NM_004329.2	148	Gat/Aat																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742473	17742473	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1288774741		P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	59	629	1	ENST00000250003.3:c.655G>A	p.Gly219Ser	p.G219S	ENST00000250003	NM_002478.4	219	Ggc/Agc																																																																															
WT1	7490	MSKCC	GRCh37	11	32438037	32438037	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	53	468	0	ENST00000332351.3:c.1000A>C	p.Asn334His	p.N334H	ENST00000332351	NM_024426.4	334	Aac/Cac																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129169	64129169	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746466314		P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	74	449	0	ENST00000334205.4:c.707C>T	p.Ser236Leu	p.S236L	ENST00000334205	NM_003942.2	236	tCg/tTg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573210	64573210	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	77	506	0	ENST00000337652.1:c.1097A>G	p.Tyr366Cys	p.Y366C	ENST00000337652	NM_130803.2	366	tAc/tGc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376287	118376287	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	89	658	0	ENST00000534358.1:c.9680C>G	p.Ser3227Cys	p.S3227C	ENST00000534358	NM_005933.3	3227	tCt/tGt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	404932	404932	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	71	433	0	ENST00000399788.2:c.4262G>T	p.Arg1421Leu	p.R1421L	ENST00000399788	NM_001042603.1	1421	cGg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435020	49435020	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	28	299	0	ENST00000301067.7:c.6533G>T	p.Gly2178Val	p.G2178V	ENST00000301067	NM_003482.3	2178	gGa/gTa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112127	115112127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	51	555	0	ENST00000257566.3:c.1613G>T	p.Gly538Val	p.G538V	ENST00000257566	NM_016569.3	538	gGc/gTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133234453	133234453	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	80	383	0	ENST00000320574.5:c.3378+1G>T		p.X1126_splice	ENST00000320574	NM_006231.2	1126																																																																																
FLT1	2321	MSKCC	GRCh37	13	29008059	29008059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	72	411	0	ENST00000282397.4:c.710C>T	p.Pro237Leu	p.P237L	ENST00000282397	NM_002019.4	237	cCa/cTa																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008333	29008333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	81	412	0	ENST00000282397.4:c.538G>T	p.Asp180Tyr	p.D180Y	ENST00000282397	NM_002019.4	180	Gat/Tat																																																																															
MGA	23269	MSKCC	GRCh37	15	42059085	42059085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1064	210	815	0	ENST00000219905.7:c.8805G>T	p.Lys2935Asn	p.K2935N	ENST00000219905	NM_001164273.1	2935	aaG/aaT																																																																															
NF1	4763	MSKCC	GRCh37	17	29528177	29528177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	100	292	0	ENST00000358273.4:c.1185G>T	p.Lys395Asn	p.K395N	ENST00000358273	NM_001042492.2	395	aaG/aaT																																																																															
NF1	4763	MSKCC	GRCh37	17	29557943	29557943	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	30	244	0	ENST00000358273.4:c.3197G>T	p.Arg1066Ile	p.R1066I	ENST00000358273	NM_001042492.2	1066	aGa/aTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29585461	29585461	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	97	357	0	ENST00000358273.4:c.4273G>T	p.Gly1425Trp	p.G1425W	ENST00000358273	NM_001042492.2	1425	Ggg/Tgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599993	10599993	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	93	564	0	ENST00000171111.5:c.1583A>C	p.Gln528Pro	p.Q528P	ENST00000171111	NM_203500.1	528	cAg/cCg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308066	30308066	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs776946024		P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	88	428	0	ENST00000262643.3:c.203G>T	p.Cys68Phe	p.C68F	ENST00000262643	NM_001238.2	68	tGt/tTt																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308356	30308356	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	80	512	0	ENST00000262643.3:c.370G>T	p.Glu124Ter	p.E124*	ENST00000262643	NM_001238.2	124	Gaa/Taa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944509	40944509	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	101	556	0	ENST00000373198.4:c.1993G>T	p.Ala665Ser	p.A665S	ENST00000373198	NM_133170.3	665	Gct/Tct																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419951	41419951	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	104	517	0	ENST00000373198.4:c.370G>T	p.Val124Leu	p.V124L	ENST00000373198	NM_133170.3	124	Gtg/Ttg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411621	63411621	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	129	314	0	ENST00000330258.3:c.1546G>C	p.Glu516Gln	p.E516Q	ENST00000330258	NM_152424.3	516	Gag/Cag																																																																															
MED12	9968	MSKCC	GRCh37	X	70344937	70344937	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	129	363	0	ENST00000374080.3:c.2167G>C	p.Gly723Arg	p.G723R	ENST00000374080		723	Ggg/Cgg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15964751	15964751	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	153	467	0	ENST00000268712.3:c.5845del	p.Glu1949AsnfsTer27	p.E1949Nfs*27	ENST00000268712	NM_006311.3	1949	Gaa/aa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449776	8449778	+	stop_gained	Nonsense_Mutation	ONP	GTG	GTG	TTT			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	132	409	2	ENST00000356435.5:c.3935_3937delinsAAA	p.Ser1312_His1313delinsTer	p.S1312_H1313delins*	ENST00000356435		1312	tCACac/tAAAac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857926	9857927	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	42	414	0	ENST00000330684.3:c.3474_3475delinsAG	p.Phe1158_Arg1159delinsLeuGly	p.F1158_R1159delinsLG	ENST00000330684	NM_001134407.1	1158	ttCCgc/ttAGgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1060501201		P-0006608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	726	338	0	ENST00000269305.4:c.773A>G	p.Glu258Gly	p.E258G	ENST00000269305	NM_001126112.2	258	gAa/gGa																																																																															
KDR	3791	MSKCC	GRCh37	4	55973928	55973928	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	214	263	0	ENST00000263923.4:c.1388A>T	p.Glu463Val	p.E463V	ENST00000263923	NM_002253.2	463	gAg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112157613	112157613	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	459	325	0	ENST00000257430.4:c.1333C>T	p.Gln445Ter	p.Q445*	ENST00000257430	NM_000038.5	445	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879672	151879672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	123	117	0	ENST00000262189.6:c.5273G>A	p.Arg1758His	p.R1758H	ENST00000262189	NM_170606.2	1758	cGt/cAt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610083	81610083	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	71	370	0	ENST00000298171.2:c.1681A>C	p.Ser561Arg	p.S561R	ENST00000298171	NM_000369.2	561	Agt/Cgt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117782	70117782	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	819	475	0	ENST00000245479.2:c.250T>G	p.Tyr84Asp	p.Y84D	ENST00000245479	NM_000346.3	84	Tac/Gac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134251	11134251	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1218643327		P-0006608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	240	363	0	ENST00000344626.4:c.2917C>T	p.Arg973Trp	p.R973W	ENST00000344626	NM_003072.3	973	Cgg/Tgg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560983	9560983	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1424	223	308	0	ENST00000353224.5:c.799A>T	p.Arg267Trp	p.R267W	ENST00000353224	NM_177990.2	267	Agg/Tgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29556435	29556452	+	inframe_deletion	In_Frame_Del	DEL	TAACAAATTGAAGAATAC	TAACAAATTGAAGAATAC	-			P-0006608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	136	214	0	ENST00000358273.4:c.2802_2819del	p.Asn935_Thr940del	p.N935_T940del	ENST00000358273	NM_001042492.2	934	ttTAACAAATTGAAGAATACc/ttc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119889	70119890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0006608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	199	338	0	ENST00000245479.2:c.892_893dup	p.Pro299CysfsTer85	p.P299Cfs*85	ENST00000245479	NM_000346.3	297	-/CT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034416	47034416	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0009748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1126	285	515	0	ENST00000329236.7:c.272-2A>T		p.X91_splice	ENST00000329236	NM_001204466.1	91																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72992135	72992135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1589	346	743	0	ENST00000268489.5:c.1910G>A	p.Gly637Glu	p.G637E	ENST00000268489	NM_006885.3	637	gGg/gAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717730	89717731	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0009748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	154	295	0	ENST00000371953.3:c.757_758del	p.Ile253GlnfsTer44	p.I253Qfs*44	ENST00000371953	NM_000314.4	252	gAT/g																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974745	21974747	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0009748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	144	310	0	ENST00000304494.5:c.80_82del	p.Glu27del	p.E27del	ENST00000304494	NM_000077.4	27	gAGGtg/gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0010640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	332	548	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242486	+	inframe_deletion	In_Frame_Del	DEL	TTAAGAGAAGCAACATCT	TTAAGAGAAGCAACATCT	-	rs121913440		P-0010640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1200	198	420	0	ENST00000275493.2:c.2239_2256del	p.Leu747_Ser752del	p.L747_S752del	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAACATCT/-																																																																															
YAP1	10413	MSKCC	GRCh37	11	101984952	101984952	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1384754271		P-0010640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	145	211	1	ENST00000282441.5:c.399G>T	p.Gln133His	p.Q133H	ENST00000282441	NM_001130145.2	133	caG/caT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0010703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	18	328	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0010703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	12	152	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0011593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	81	260	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MED12	9968	MSKCC	GRCh37	X	70352766	70352766	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866231134		P-0011593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			954	128	572	0	ENST00000374080.3:c.4487G>A	p.Arg1496His	p.R1496H	ENST00000374080		1496	cGc/cAc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123220528	123220528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1163	93	538	1	ENST00000218089.9:c.3185G>A	p.Gly1062Glu	p.G1062E	ENST00000218089	NM_001042749.1	1062	gGa/gAa																																																																															
CDH1	999	MSKCC	GRCh37	16	68845624	68845649	+	frameshift_variant	Frame_Shift_Del	DEL	CGATGATGTGAACACCTACAATGCCG	CGATGATGTGAACACCTACAATGCCG	-			P-0011593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	70	309	0	ENST00000261769.5:c.871_896del	p.Asp291HisfsTer11	p.D291Hfs*11	ENST00000261769	NM_004360.3	290	gaCGATGATGTGAACACCTACAATGCCGcc/gacc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341575	89341575	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	32	249	0	ENST00000301030.4:c.7495del	p.Glu2499SerfsTer3	p.E2499Sfs*3	ENST00000301030	NM_001256183.1	2499	Gag/ag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012146-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			352	173	749	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138135	2138135	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201206500		P-0012146-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			896	147	790	1	ENST00000219476.3:c.5155G>A	p.Ala1719Thr	p.A1719T	ENST00000219476	NM_000548.3	1719	Gca/Aca																																																																															
STAG2	10735	MSKCC	GRCh37	X	123227959	123227959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012146-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			523	143	838	2	ENST00000218089.9:c.3670G>A	p.Glu1224Lys	p.E1224K	ENST00000218089	NM_001042749.1	1224	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68849512	68849512	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012146-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	199	810	0	ENST00000261769.5:c.1416del	p.Val473SerfsTer8	p.V473Sfs*8	ENST00000261769	NM_004360.3	472	aCc/ac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0012707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	27	312	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248157	110248157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	46	477	0	ENST00000374672.4:c.1315C>T	p.Arg439Cys	p.R439C	ENST00000374672	NM_004235.4	439	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	51	586	0	ENST00000269305.4:c.713del	p.Cys238LeufsTer9	p.C238Lfs*9	ENST00000269305	NM_001126112.2	238	tGt/tt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47158150	47158202	+	frameshift_variant	Frame_Shift_Del	DEL	CACATGCTATTTCACCTTGAGCTCTTTCATCTTTAGAAAGAGGTGTACACTCA	CACATGCTATTTCACCTTGAGCTCTTTCATCTTTAGAAAGAGGTGTACACTCA	-			P-0015330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	89	678	0	ENST00000409792.3:c.4497_4549del	p.Cys1499TrpfsTer6	p.C1499Wfs*6	ENST00000409792	NM_014159.6	1499	tgTGAGTGTACACCTCTTTCTAAAGATGAAAGAGCTCAAGGTGAAATAGCATGTGgg/tggg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287330	33287330	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	140	592	0	ENST00000374542.5:c.1767del	p.Arg590GlyfsTer12	p.R590Gfs*12	ENST00000374542	NM_001141970.1	589	tcC/tc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0016929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	138	434	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115720	8115720	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	178	473	0	ENST00000346208.3:c.1066A>G	p.Met356Val	p.M356V	ENST00000346208		356	Atg/Gtg																																																																															
CBFB	865	MSKCC	GRCh37	16	67100669	67100669	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	168	465	0	ENST00000412916.2:c.367G>C	p.Gly123Arg	p.G123R	ENST00000412916		123	Ggc/Cgc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0017699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	190	508	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273012	55273012	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs755330584		P-0017699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	265	605	0	ENST00000275493.2:c.3335A>G	p.Asn1112Ser	p.N1112S	ENST00000275493	NM_005228.3	1112	aAt/aGt																																																																															
B2M	567	MSKCC	GRCh37	15	45003766	45003767	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0017699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	142	379	0	ENST00000558401.1:c.22_23delinsAA	p.Ala8Asn	p.A8N	ENST00000558401	NM_004048.2	8	GCt/AAt																																																																															
CBFB	865	MSKCC	GRCh37	16	67100619	67100619	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	277	515	0	ENST00000412916.2:c.317T>G	p.Val106Gly	p.V106G	ENST00000412916		106	gTc/gGc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47679332	47679339	+	frameshift_variant	Frame_Shift_Del	DEL	GCATCCTC	GCATCCTC	-			P-0017699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	363	466	1	ENST00000347630.2:c.868_875del	p.Glu290ProfsTer4	p.E290Pfs*4	ENST00000347630	NM_001007230.1	290	GAGGATGCc/c																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161210	56161210	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	546	558	0	ENST00000399503.3:c.1079T>G	p.Phe360Cys	p.F360C	ENST00000399503	NM_005921.1	360	tTt/tGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181813	56181815	+	inframe_deletion	In_Frame_Del	DEL	TTA	TTA	-			P-0017699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	234	511	0	ENST00000399503.3:c.4040_4042del	p.Ile1347del	p.I1347del	ENST00000399503	NM_005921.1	1346	gTTAtt/gtt																																																																															
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	47	196	1	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0018105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	188	411	0	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
PIK3C3	5289	MSKCC	GRCh37	18	39550419	39550419	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0018105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	84	225	0	ENST00000262039.4:c.530A>G	p.Lys177Arg	p.K177R	ENST00000262039	NM_002647.2	177	aAg/aGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	175	538	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118704	115118706	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0019579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	249	580	2	ENST00000257566.3:c.635_637del	p.Asn212del	p.N212del	ENST00000257566	NM_016569.3	212	aACAtt/att																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246498775	246498775	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0019579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	196	543	0	ENST00000388985.4:c.230A>G	p.Lys77Arg	p.K77R	ENST00000388985		77	aAa/aGa																																																																															
RET	5979	MSKCC	GRCh37	10	43614987	43614987	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1364361946		P-0019579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	77	620	0	ENST00000355710.3:c.2401C>T	p.Leu801Phe	p.L801F	ENST00000355710	NM_020975.4	801	Ctc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579417	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	GGAG	GGAG	-			P-0019579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	302	820	2	ENST00000269305.4:c.267_270del	p.Ser90GlyfsTer32	p.S90Gfs*32	ENST00000269305	NM_001126112.2	89	ccCTCC/cc																																																																															
HGF	3082	MSKCC	GRCh37	7	81374327	81374327	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	94	382	0	ENST00000222390.5:c.735C>G	p.Phe245Leu	p.F245L	ENST00000222390	NM_000601.4	245	ttC/ttG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs942158624		P-0020593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	230	765	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509676	106509676	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139426517		P-0020593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	79	586	1	ENST00000359195.3:c.1670C>T	p.Ala557Val	p.A557V	ENST00000359195	NM_002649.2	557	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426544	49426544	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	329	1053	17	ENST00000301067.7:c.11944C>T	p.Arg3982Ter	p.R3982*	ENST00000301067	NM_003482.3	3982	Cga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115386	115115386	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0020593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	364	725	0	ENST00000257566.3:c.940del	p.Arg314GlufsTer9	p.R314Efs*9	ENST00000257566	NM_016569.3	314	Aga/ga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721024	176721024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	143	584	1	ENST00000439151.2:c.6655C>T	p.Arg2219Cys	p.R2219C	ENST00000439151	NM_022455.4	2219	Cgt/Tgt																																																																															
AURKA	6790	MSKCC	GRCh37	20	54948572	54948572	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373550419		P-0020624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	47	522	2	ENST00000312783.6:c.746C>T	p.Ser249Leu	p.S249L	ENST00000312783	NM_198436.1	249	tCg/tTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089484	27089484	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	165	723	0	ENST00000324856.7:c.2440A>G	p.Asn814Asp	p.N814D	ENST00000324856	NM_006015.4	814	Aac/Gac																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436679	110436679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	243	914	0	ENST00000375856.3:c.1722G>T	p.Arg574Ser	p.R574S	ENST00000375856	NM_003749.2	574	agG/agT																																																																															
CDH1	999	MSKCC	GRCh37	16	68862143	68862150	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAGGAT	CAGAGGAT	-			P-0021659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	200	686	0	ENST00000261769.5:c.2231_2238del	p.Pro744ArgfsTer10	p.P744Rfs*10	ENST00000261769	NM_004360.3	744	cCAGAGGAT/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7577152	7577154	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ACC	ACC	-			P-0021794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	89	648	0	ENST00000269305.4:c.784_786del	p.Gly262del	p.G262del	ENST00000269305	NM_001126112.2	262	GGT/-																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851193	63851193	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	84	647	0	ENST00000279873.7:c.1971C>G	p.Phe657Leu	p.F657L	ENST00000279873	NM_032199.2	657	ttC/ttG																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911154	32911154	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	78	526	0	ENST00000380152.3:c.2663del	p.Asn888IlefsTer7	p.N888Ifs*7	ENST00000380152		888	Aat/at																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675514	40675514	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	96	586	0	ENST00000249776.8:c.295C>T	p.Gln99Ter	p.Q99*	ENST00000249776	NM_033286.3	99	Cag/Tag																																																																															
CIC	23152	MSKCC	GRCh37	19	42793361	42793361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	132	775	1	ENST00000575354.2:c.1163G>A	p.Gly388Asp	p.G388D	ENST00000575354	NM_015125.3	388	gGc/gAc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57466874	57466874	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	128	633	0	ENST00000371085.3:c.93G>C	p.Gln31His	p.Q31H	ENST00000371085	NM_000516.4	31	caG/caC																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244148	153244148	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	144	756	0	ENST00000281708.4:c.2009del	p.Gly670GlufsTer37	p.G670Efs*37	ENST00000281708	NM_033632.3	670	gGa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0022951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	85	787	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0022951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	103	802	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225264		P-0022951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	44	663	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11307913	11307913	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149611181		P-0022951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	136	738	1	ENST00000361445.4:c.1079G>A	p.Arg360Gln	p.R360Q	ENST00000361445	NM_004958.3	360	cGg/cAg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572651	64572651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	141	811	1	ENST00000337652.1:c.1220C>A	p.Ser407Tyr	p.S407Y	ENST00000337652	NM_130803.2	407	tCc/tAc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56367665	56367673	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCACAGA	TTTCACAGA	-			P-0022951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	56	305	0	ENST00000348428.3:c.499-6_501del		p.X167_splice	ENST00000348428	NM_006785.3	167																																																																																
RBM10	8241	MSKCC	GRCh37	X	47030641	47030646	+	intron_variant	Intron	INS	CAGCCA	CAGCCA	ATCCTGCTGAGGATGCAGCATGCTGAGGATGCTG			P-0022951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	109	438	0	ENST00000329236.7:c.201+1744_201+1749delinsATCCTGCTGAGGATGCAGCATGCTGAGGATGCTG		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0024836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	246	644	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259903	16259903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	62	459	2	ENST00000375759.3:c.7168C>T	p.Pro2390Ser	p.P2390S	ENST00000375759	NM_015001.2	2390	Ccc/Tcc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50785662	50785662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	75	532	1	ENST00000398568.2:c.652G>A	p.Gly218Ser	p.G218S	ENST00000398568	NM_001042412.1	218	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175564	112175565	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0024836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	89	275	0	ENST00000257430.4:c.4275_4276dup	p.Ser1426IlefsTer48	p.S1426Ifs*48	ENST00000257430	NM_000038.5	1425	gat/gATat																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251882	153251884	+	splice_donor_variant,coding_sequence_variant	Splice_Site	ONP	ACC	ACC	TCA			P-0024836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	48	430	0	ENST00000281708.4:c.1122_1122+2delinsTGA		p.X374_splice	ENST00000281708	NM_033632.3	374																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0025356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	137	735	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	120	696	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	90	387	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78444633	78444633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	39	280	0	ENST00000370768.2:c.56G>T	p.Gly19Val	p.G19V	ENST00000370768	NM_003902.3	19	gGt/gTt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181818	56181819	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACTTACTG			P-0025810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	36	298	0	ENST00000399503.3:c.4045_4046insTACTGACT	p.Tyr1349LeufsTer31	p.Y1349Lfs*31	ENST00000399503	NM_005921.1	1348	aac/aACTTACTGac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0027898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	153	507	2	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
CBFB	865	MSKCC	GRCh37	16	67063335	67063368	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAGCAAGTTCGAGAACGAGGAGTTTTTTAGGA	AGAAGCAAGTTCGAGAACGAGGAGTTTTTTAGGA	-			P-0027898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	18	226	0	ENST00000412916.2:c.27_60del	p.Arg9SerfsTer2	p.R9Sfs*2	ENST00000412916		9	AGAAGCAAGTTCGAGAACGAGGAGTTTTTTAGGAag/ag																																																																															
CDH1	999	MSKCC	GRCh37	16	68846076	68846076	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	197	667	0	ENST00000261769.5:c.1048del	p.Leu350PhefsTer6	p.L350Ffs*6	ENST00000261769	NM_004360.3	349	gaC/ga																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913407		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	225	331	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	148	593	0	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	126	443	7	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72891538	72891538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs529764235		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	172	340	0	ENST00000325599.8:c.224G>A	p.Arg75His	p.R75H	ENST00000325599	NM_018130.2	75	cGc/cAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435300	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-	rs765493638		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	73	225	2	ENST00000375856.3:c.3099_3101del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1033	ccACCg/ccg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	94	341	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	136	451	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	189	565	1	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	163	386	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	167	502	1	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7980034	7980034	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369807670		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	241	678	1	ENST00000319144.4:c.1303G>A	p.Val435Ile	p.V435I	ENST00000319144	NM_001139.2	435	Gtc/Atc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662458	227662458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	136	472	2	ENST00000305123.5:c.997G>A	p.Glu333Lys	p.E333K	ENST00000305123	NM_005544.2	333	Gaa/Aaa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274217	5274217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	178	484	0	ENST00000357368.4:c.230G>A	p.Arg77His	p.R77H	ENST00000357368	NM_002850.3	77	cGc/cAc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222191	2222191	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs778747333		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	190	675	0	ENST00000398665.3:c.3023C>G	p.Ser1008Cys	p.S1008C	ENST00000398665	NM_032482.2	1008	tCc/tGc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	396	581	7	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434182	12434182	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1187529076		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	199	476	1	ENST00000287820.6:c.556del	p.Ser186ValfsTer47	p.S186Vfs*47	ENST00000287820	NM_015869.4	184	Aaa/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	199	650	3	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	196	715	1	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
B2M	567	MSKCC	GRCh37	15	45007806	45007807	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	133	473	0	ENST00000558401.1:c.253_254del	p.Leu85ValfsTer4	p.L85Vfs*4	ENST00000558401	NM_004048.2	85	TTg/g																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739024	145739024	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371818842		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	216	551	0	ENST00000428558.2:c.2131G>A	p.Glu711Lys	p.E711K	ENST00000428558	NM_004260.3	711	Gag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060955	38060955	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	94	332	0	ENST00000250448.2:c.1034del	p.Gly345AlafsTer5	p.G345Afs*5	ENST00000250448	NM_004496.3	345	gGc/gc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131940522	131940522	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375315737		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	133	362	0	ENST00000265335.6:c.2549G>A	p.Arg850His	p.R850H	ENST00000265335		850	cGt/cAt																																																																															
AKT2	208	MSKCC	GRCh37	19	40743886	40743886	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434593		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	152	510	3	ENST00000392038.2:c.821G>A	p.Arg274His	p.R274H	ENST00000392038	NM_001626.4	274	cGc/cAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857379	9857380	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	130	404	0	ENST00000330684.3:c.4021dup	p.Ser1341LysfsTer25	p.S1341Kfs*25	ENST00000330684	NM_001134407.1	1341	agc/aAgc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86668002	86668002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769775990		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	94	334	0	ENST00000274376.6:c.1766G>A	p.Arg589His	p.R589H	ENST00000274376	NM_002890.2	589	cGc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259381	16259381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	118	356	0	ENST00000375759.3:c.6646G>A	p.Ala2216Thr	p.A2216T	ENST00000375759	NM_015001.2	2216	Gct/Act																																																																															
ID3	3399	MSKCC	GRCh37	1	23885632	23885632	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	142	414	1	ENST00000374561.5:c.286del	p.His96ThrfsTer30	p.H96Tfs*30	ENST00000374561	NM_002167.4	96	Cac/ac																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120483203	120483204	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	151	398	1	ENST00000256646.2:c.3157dup	p.Leu1053ProfsTer21	p.L1053Pfs*21	ENST00000256646	NM_024408.3	1053	ctg/cCtg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444018	49444018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	178	559	0	ENST00000301067.7:c.3353T>C	p.Leu1118Pro	p.L1118P	ENST00000301067	NM_003482.3	1118	cTa/cCa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864847	57864847	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	176	607	0	ENST00000228682.2:c.2324C>A	p.Pro775His	p.P775H	ENST00000228682	NM_005269.2	775	cCc/cAc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865628	57865628	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	250	735	0	ENST00000228682.2:c.3109del	p.Leu1037TrpfsTer23	p.L1037Wfs*23	ENST00000228682	NM_005269.2	1035	aaC/aa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103504578	103504578	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	124	382	0	ENST00000355739.4:c.204del	p.Arg69GlufsTer15	p.R69Efs*15	ENST00000355739	NM_000123.3	67	Ttt/tt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138478	2138478	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138831802		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	269	673	1	ENST00000219476.3:c.5291G>A	p.Ser1764Asn	p.S1764N	ENST00000219476	NM_000548.3	1764	aGc/aAc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868140	56868140	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	154	500	1	ENST00000308159.5:c.1638G>T	p.Glu546Asp	p.E546D	ENST00000308159	NM_014669.4	546	gaG/gaT																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245725	41245725	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs397508911		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	161	590	2	ENST00000357654.3:c.1823del	p.Lys608ArgfsTer4	p.K608Rfs*4	ENST00000357654	NM_007294.3	608	aAg/ag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63545653	63545653	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	163	470	0	ENST00000307078.5:c.941T>C	p.Met314Thr	p.M314T	ENST00000307078	NM_004655.3	314	aTg/aCg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56367746	56367746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	169	420	1	ENST00000348428.3:c.572G>A	p.Arg191Gln	p.R191Q	ENST00000348428	NM_006785.3	191	cGa/cAa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56376709	56376709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	82	469	0	ENST00000348428.3:c.749C>T	p.Ala250Val	p.A250V	ENST00000348428	NM_006785.3	250	gCt/gTt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298137	15298137	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200317373		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	233	571	0	ENST00000263388.2:c.1619C>T	p.Thr540Met	p.T540M	ENST00000263388	NM_000435.2	540	aCg/aTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219922	36219922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	192	607	0	ENST00000222270.7:c.4724T>C	p.Leu1575Pro	p.L1575P	ENST00000222270	NM_014727.1	1575	cTg/cCg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25471122	25471122	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	176	435	0	ENST00000264709.3:c.640-1G>T		p.X214_splice	ENST00000264709	NM_175629.2	214																																																																																
CASP8	841	MSKCC	GRCh37	2	202149670	202149670	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	122	507	0	ENST00000358485.4:c.1111T>G	p.Cys371Gly	p.C371G	ENST00000358485	NM_001080125.1	371	Tgc/Ggc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225365203	225365203	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	110	274	0	ENST00000264414.4:c.1487T>C	p.Val496Ala	p.V496A	ENST00000264414	NM_003590.4	496	gTa/gCa																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793314	242793314	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	242	631	0	ENST00000334409.5:c.763A>G	p.Ser255Gly	p.S255G	ENST00000334409	NM_005018.2	255	Agc/Ggc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022502	31022502	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs775538653		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	66	299	0	ENST00000375687.4:c.1987A>G	p.Ser663Gly	p.S663G	ENST00000375687	NM_015338.5	663	Agc/Ggc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40710625	40710625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	181	546	0	ENST00000373198.4:c.4226C>T	p.Ala1409Val	p.A1409V	ENST00000373198	NM_133170.3	1409	gCc/gTc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206863	36206863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	129	402	0	ENST00000300305.3:c.649G>T	p.Gly217Trp	p.G217W	ENST00000300305		217	Ggg/Tgg																																																																															
EP300	2033	MSKCC	GRCh37	22	41513409	41513409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	172	537	4	ENST00000263253.7:c.313G>A	p.Ala105Thr	p.A105T	ENST00000263253	NM_001429.3	105	Gcc/Acc																																																																															
EP300	2033	MSKCC	GRCh37	22	41523641	41523641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	233	638	3	ENST00000263253.7:c.1057C>T	p.Arg353Cys	p.R353C	ENST00000263253	NM_001429.3	353	Cgc/Tgc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332739	153332739	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	143	468	0	ENST00000281708.4:c.217del	p.Gln73SerfsTer15	p.Q73Sfs*15	ENST00000281708	NM_033632.3	73	Cag/ag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540104	187540105	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	121	346	0	ENST00000441802.2:c.7635_7636del	p.Gly2546ThrfsTer9	p.G2546Tfs*9	ENST00000441802	NM_005245.3	2545	agAGga/agga																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520223	176520223	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	179	598	0	ENST00000292408.4:c.1142C>A	p.Ala381Asp	p.A381D	ENST00000292408	NM_213647.1	381	gCt/gAt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117706902	117706902	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	142	466	0	ENST00000368508.3:c.2248del	p.Ala750LeufsTer2	p.A750Lfs*2	ENST00000368508	NM_002944.2	750	Gct/ct																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450321	50450321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	168	541	0	ENST00000331340.3:c.505G>A	p.Gly169Arg	p.G169R	ENST00000331340	NM_006060.4	169	Ggg/Agg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221814	55221815	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	252	715	0	ENST00000275493.2:c.861dup	p.Gly288TrpfsTer11	p.G288Wfs*11	ENST00000275493	NM_005228.3	286	-/T																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540214	23540219	+	inframe_deletion	In_Frame_Del	DEL	CTCTGG	CTCTGG	-			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	33	328	1	ENST00000380871.4:c.184_189del	p.Pro62_Glu63del	p.P62_E63del	ENST00000380871	NM_006167.3	62	CCAGAG/-																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87563503	87563503	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	180	648	0	ENST00000277120.3:c.1891A>G	p.Met631Val	p.M631V	ENST00000277120		631	Atg/Gtg																																																																															
ABL1	25	MSKCC	GRCh37	9	133755916	133755916	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766145624		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	183	538	1	ENST00000318560.5:c.1543G>A	p.Val515Ile	p.V515I	ENST00000318560	NM_005157.4	515	Gtc/Atc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390589	139390589	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	252	740	1	ENST00000277541.6:c.7602G>T	p.Glu2534Asp	p.E2534D	ENST00000277541	NM_017617.3	2534	gaG/gaT																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929475	44929475	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	196	275	0	ENST00000377967.4:c.2575A>G	p.Met859Val	p.M859V	ENST00000377967	NM_021140.2	859	Atg/Gtg																																																																															
MED12	9968	MSKCC	GRCh37	X	70338703	70338703	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	127	274	0	ENST00000374080.3:c.99G>T	p.Glu33Asp	p.E33D	ENST00000374080		33	gaG/gaT																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56490609	56490610	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0028074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	53	472	2	ENST00000267101.3:c.2253_2254delinsAT	p.Ser752Cys	p.S752C	ENST00000267101	NM_001982.3	751	caGAgt/caATgt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434713	110434713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	55	624	0	ENST00000375856.3:c.3688G>A	p.Gly1230Ser	p.G1230S	ENST00000375856	NM_003749.2	1230	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577092	7577093	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGGTCTCTCCCAGGACAGGCACAAACA			P-0028074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	207	705	0	ENST00000269305.4:c.819_845dup	p.Val274_Arg282dup	p.V274_R282dup	ENST00000269305	NM_001126112.2	274	cgg/cgTGTTTGTGCCTGTCCTGGGAGAGACCGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0028074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	158	337	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
ALK	238	MSKCC	GRCh37	2	29940510	29940510	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	208	577	0	ENST00000389048.3:c.721T>A	p.Phe241Ile	p.F241I	ENST00000389048	NM_004304.4	241	Ttt/Att																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275138	41275138	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	85	330	0	ENST00000349496.5:c.1304A>C	p.Lys435Thr	p.K435T	ENST00000349496	NM_001904.3	435	aAg/aCg																																																																															
MITF	4286	MSKCC	GRCh37	3	70008521	70008521	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876657699		P-0028074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	52	507	0	ENST00000352241.4:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000352241	NM_198159.2	371	Cga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259362	89259362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	142	512	0	ENST00000336596.2:c.506G>A	p.Arg169Lys	p.R169K	ENST00000336596	NM_005233.5	169	aGa/aAa																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0028074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	163	466	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39325082	39325082	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0031769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	277	404	0	ENST00000373001.3:c.237G>C	p.Lys79Asn	p.K79N	ENST00000373001	NM_022157.3	79	aaG/aaC																																																																															
MYC	4609	MSKCC	GRCh37	8	128750998	128750998	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1439970381		P-0031769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	199	349	0	ENST00000377970.2:c.535C>T	p.Pro179Ser	p.P179S	ENST00000377970	NM_002467.4	179	Ccc/Tcc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79974778	79974778	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	68	789	0	ENST00000265081.6:c.1206T>G	p.Phe402Leu	p.F402L	ENST00000265081	NM_002439.4	402	ttT/ttG																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878689	151878689	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	52	473	0	ENST00000262189.6:c.6256del	p.Ser2086LeufsTer20	p.S2086Lfs*20	ENST00000262189	NM_170606.2	2086	Tct/ct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0031816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	267	468	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0031816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	579	793	1	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0031816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	122	268	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
RB1	5925	MSKCC	GRCh37	13	48941685	48941685	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs763184576		P-0031816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	127	225	0	ENST00000267163.4:c.995A>G	p.Asp332Gly	p.D332G	ENST00000267163	NM_000321.2	332	gAt/gGt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12043157	12043158	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0031816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	184	247	0	ENST00000353533.5:c.1044dup	p.Thr349TyrfsTer4	p.T349Yfs*4	ENST00000353533	NM_003010.3	348	ctt/cTtt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25457191	25457191	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1480791034		P-0031816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	144	711	0	ENST00000264709.3:c.2696G>C	p.Arg899Pro	p.R899P	ENST00000264709	NM_175629.2	899	cGc/cCc																																																																															
NF2	4771	MSKCC	GRCh37	22	30069351	30069351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	88	754	0	ENST00000338641.4:c.1216G>A	p.Glu406Lys	p.E406K	ENST00000338641	NM_000268.3	406	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265419	152265419	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	69	535	0	ENST00000206249.3:c.872T>G	p.Leu291Arg	p.L291R	ENST00000206249	NM_000125.3	291	cTt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68845659	68845660	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0032100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	83	648	0	ENST00000261769.5:c.907_908del	p.Thr303HisfsTer7	p.T303Hfs*7	ENST00000261769	NM_004360.3	302	tAC/t																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570311	87570311	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1285612169		P-0032100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	79	504	1	ENST00000277120.3:c.2051C>T	p.Ala684Val	p.A684V	ENST00000277120		684	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	37	461	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0032341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	34	644	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600446	10600446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	25	649	1	ENST00000171111.5:c.1409G>A	p.Arg470His	p.R470H	ENST00000171111	NM_203500.1	470	cGt/cAt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781791	3781791	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	48	535	0	ENST00000262367.5:c.4876G>T	p.Glu1626Ter	p.E1626*	ENST00000262367	NM_004380.2	1626	Gag/Tag																																																																															
GNA11	2767	MSKCC	GRCh37	19	3113463	3113463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	43	456	0	ENST00000078429.4:c.457C>G	p.Leu153Val	p.L153V	ENST00000078429	NM_002067.2	153	Ctc/Gtc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061163	38061175	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCGGCCCCCGG	CGCCGGCCCCCGG	-			P-0032547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	51	192	0	ENST00000250448.2:c.814_826del	p.Pro272AlafsTer45	p.P272Afs*45	ENST00000250448	NM_004496.3	272	CCGGGGGCCGGCGgc/gc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118390346	118390346	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	119	587	0	ENST00000534358.1:c.11160G>C	p.Leu3720Phe	p.L3720F	ENST00000534358	NM_005933.3	3720	ttG/ttC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907371	32907371	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	84	334	0	ENST00000380152.3:c.1759del	p.Thr587GlnfsTer27	p.T587Qfs*27	ENST00000380152		586	Aaa/aa																																																																															
RHEB	6009	MSKCC	GRCh37	7	151174438	151174438	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	38	288	0	ENST00000262187.5:c.256T>A	p.Ser86Thr	p.S86T	ENST00000262187	NM_005614.3	86	Tct/Act																																																																															
AR	367	MSKCC	GRCh37	X	66765127	66765127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	64	388	4	ENST00000374690.3:c.139G>A	p.Ala47Thr	p.A47T	ENST00000374690	NM_000044.3	47	Gca/Aca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0032833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	79	316	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0032833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	78	335	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0033066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	326	645	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101118	41101118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751886972		P-0033066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	159	632	1	ENST00000373198.4:c.1238C>T	p.Ala413Val	p.A413V	ENST00000373198	NM_133170.3	413	gCg/gTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508424	106508424	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751449393		P-0033066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	85	224	0	ENST00000359195.3:c.418C>T	p.Arg140Trp	p.R140W	ENST00000359195	NM_002649.2	140	Cgg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244233	5244233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	115	565	1	ENST00000357368.4:c.1249G>A	p.Val417Met	p.V417M	ENST00000357368	NM_002850.3	417	Gtg/Atg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0034328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	172	336	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ATM	472	MSKCC	GRCh37	11	108168089	108168089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	94	385	0	ENST00000278616.4:c.4985C>A	p.Thr1662Asn	p.T1662N	ENST00000278616	NM_000051.3	1662	aCt/aAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579312	7579319	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CGTGCAAG	CGTGCAAG	-			P-0034328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	261	443	0	ENST00000269305.4:c.368_375del	p.Thr123IlefsTer23	p.T123Ifs*23	ENST00000269305	NM_001126112.2	123	aCTTGCACG/a																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619220	37619221	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0034328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	111	447	0	ENST00000447079.4:c.899_900del	p.Arg300IlefsTer6	p.R300Ifs*6	ENST00000447079	NM_015083.1	299	cAG/c																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182132	99182132	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	182	406	0	ENST00000074304.5:c.2197A>G	p.Ser733Gly	p.S733G	ENST00000074304	NM_001134224.1	733	Agc/Ggc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151948034	151948034	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	86	501	0	ENST00000262189.6:c.1639del	p.Glu547LysfsTer65	p.E547Kfs*65	ENST00000262189	NM_170606.2	547	Gaa/aa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5072578	5072579	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0034328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	78	366	0	ENST00000381652.3:c.1729_1730del	p.Glu577SerfsTer8	p.E577Sfs*8	ENST00000381652	NM_004972.3	576	acAGaa/acaa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891179	101891179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	72	387	0	ENST00000374994.4:c.140C>A	p.Thr47Asn	p.T47N	ENST00000374994	NM_004612.2	47	aCt/aAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0034500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	151	572	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168695	32168695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143103753		P-0034500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	56	597	0	ENST00000375023.3:c.4228C>T	p.Arg1410Cys	p.R1410C	ENST00000375023	NM_004557.3	1410	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0034500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	105	335	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026137	71026138	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	126	487	0	ENST00000318789.4:c.1484dup	p.Thr496HisfsTer21	p.T496Hfs*21	ENST00000318789	NM_032682.5	495	ttc/ttTc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672294	30672294	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	90	758	0	ENST00000376406.3:c.4666A>G	p.Thr1556Ala	p.T1556A	ENST00000376406	NM_014641.2	1556	Act/Gct																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772893	135772894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0034500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	168	666	0	ENST00000298552.3:c.2728_2729dup	p.Leu910PhefsTer22	p.L910Ffs*22	ENST00000298552	NM_001162426.1	910	ttg/ttTTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720676	89720676	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	10	246	0	ENST00000371953.3:c.827A>C	p.Asn276Thr	p.N276T	ENST00000371953	NM_000314.4	276	aAt/aCt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212570070	212570070	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745408040		P-0035019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	242	358	2	ENST00000342788.4:c.1171G>A	p.Val391Ile	p.V391I	ENST00000342788	NM_005235.2	391	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0035019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	346	429	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
RECQL4	9401	MSKCC	GRCh37	8	145738485	145738485	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767722327		P-0035019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	147	426	0	ENST00000428558.2:c.2500G>A	p.Ala834Thr	p.A834T	ENST00000428558	NM_004260.3	834	Gcc/Acc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670739	134670739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	65	390	0	ENST00000398015.3:c.650C>A	p.Ser217Tyr	p.S217Y	ENST00000398015	NM_004441.4	217	tCt/tAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	263	473	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934874		P-0035585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	313	725	2	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0035585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	59	283	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964491	70964491	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1447674775		P-0035585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	201	629	1	ENST00000276594.2:c.1537G>A	p.Gly513Arg	p.G513R	ENST00000276594	NM_024504.3	513	Ggg/Agg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88669586	88669586	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	102	300	0	ENST00000360948.2:c.1312C>A	p.Leu438Ile	p.L438I	ENST00000360948	NM_001012338.2	438	Ctt/Att																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41400116	41400116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	282	479	0	ENST00000373198.4:c.643G>T	p.Ala215Ser	p.A215S	ENST00000373198	NM_133170.3	215	Gct/Tct																																																																															
ERG	2078	MSKCC	GRCh37	21	39762962	39762962	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0035585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	22	269	0	ENST00000288319.7:c.874C>A	p.Pro292Thr	p.P292T	ENST00000288319	NM_182918.3	292	Cct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	256	485	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0036584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	687	792	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214604	5214604	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116515629		P-0036584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	302	743	2	ENST00000357368.4:c.4462G>A	p.Val1488Ile	p.V1488I	ENST00000357368	NM_002850.3	1488	Gtc/Atc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	62	301	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	123	530	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175153	112175153	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	97	266	0	ENST00000257430.4:c.3862G>T	p.Gly1288Ter	p.G1288*	ENST00000257430	NM_000038.5	1288	Gga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100451	8100451	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1266983268		P-0036584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	272	735	0	ENST00000346208.3:c.425C>T	p.Ser142Leu	p.S142L	ENST00000346208		142	tCg/tTg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41228557	41228557	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	299	711	0	ENST00000357654.3:c.4432G>C	p.Glu1478Gln	p.E1478Q	ENST00000357654	NM_007294.3	1478	Gag/Cag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151896433	151896433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	82	465	0	ENST00000262189.6:c.4204G>A	p.Gly1402Ser	p.G1402S	ENST00000262189	NM_170606.2	1402	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0036600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	256	806	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112137081	112137081	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0036600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	122	351	0	ENST00000257430.4:c.834+1G>C		p.X278_splice	ENST00000257430	NM_000038.5	278																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5212230	5212230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367918810		P-0036600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	125	741	1	ENST00000357368.4:c.4801G>A	p.Val1601Ile	p.V1601I	ENST00000357368	NM_002850.3	1601	Gtc/Atc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30134451	30134459	+	inframe_deletion	In_Frame_Del	DEL	TCCCCCGGG	TCCCCCGGG	-			P-0036600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	67	665	0	ENST00000263025.4:c.72_80del	p.Pro25_Glu27del	p.P25_E27del	ENST00000263025	NM_002746.2	24	gtCCCGGGGGAg/gtg																																																																															
STK11	6794	MSKCC	GRCh37	19	1226620	1226620	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782687		P-0036600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	75	524	0	ENST00000326873.7:c.1276C>T	p.Arg426Trp	p.R426W	ENST00000326873	NM_000455.4	426	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0036622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	147	456	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849800	156849800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41358549		P-0036622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	174	377	0	ENST00000524377.1:c.2056C>T	p.Arg686Cys	p.R686C	ENST00000524377	NM_002529.3	686	Cgc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0036622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	99	266	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112174266	112174267	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	99	262	0	ENST00000257430.4:c.2976dup	p.Lys993Ter	p.K993*	ENST00000257430	NM_000038.5	992	agt/agTt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258607	16258607	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753287056		P-0036622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	41	322	0	ENST00000375759.3:c.5872C>T	p.Arg1958Trp	p.R1958W	ENST00000375759	NM_015001.2	1958	Cgg/Tgg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99456353	99456353	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371466243		P-0036622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	120	275	1	ENST00000268035.6:c.1670C>T	p.Pro557Leu	p.P557L	ENST00000268035	NM_000875.3	557	cCg/cTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024045	31024045	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	61	427	0	ENST00000375687.4:c.3531del	p.Leu1178CysfsTer39	p.L1178Cfs*39	ENST00000375687	NM_015338.5	1177	cTt/ct																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542714	187542714	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	63	355	0	ENST00000441802.2:c.5026C>G	p.Leu1676Val	p.L1676V	ENST00000441802	NM_005245.3	1676	Ctt/Gtt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584629	187584629	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	60	402	0	ENST00000441802.2:c.3404A>C	p.Asn1135Thr	p.N1135T	ENST00000441802	NM_005245.3	1135	aAt/aCt																																																																															
APC	324	MSKCC	GRCh37	5	112175405	112175415	+	frameshift_variant	Frame_Shift_Del	DEL	CCACCTGAACA	CCACCTGAACA	-			P-0036622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	40	217	0	ENST00000257430.4:c.4115_4125del	p.Pro1372LeufsTer10	p.P1372Lfs*10	ENST00000257430	NM_000038.5	1372	CCACCTGAACAc/c																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163566	32163566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	68	360	0	ENST00000375023.3:c.5660C>T	p.Ala1887Val	p.A1887V	ENST00000375023	NM_004557.3	1887	gCt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0036724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	400	800	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265445	152265445	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149490424		P-0036724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	107	512	1	ENST00000206249.3:c.898C>T	p.Arg300Cys	p.R300C	ENST00000206249	NM_000125.3	300	Cgc/Tgc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206666636	206666636	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782318549		P-0036724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	144	607	0	ENST00000367120.3:c.1970G>A	p.Arg657Gln	p.R657Q	ENST00000367120	NM_014002.3	657	cGa/cAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114905796	114905796	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1414161688		P-0036724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	108	486	1	ENST00000543371.1:c.815C>T	p.Thr272Met	p.T272M	ENST00000543371	NM_001198531.1	272	aCg/aTg																																																																															
YAP1	10413	MSKCC	GRCh37	11	102056833	102056833	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	75	420	0	ENST00000282441.5:c.773G>A	p.Trp258Ter	p.W258*	ENST00000282441	NM_001130145.2	258	tGg/tAg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46266506	46266506	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	98	359	0	ENST00000371998.3:c.2493del	p.Gln832LysfsTer8	p.Q832Kfs*8	ENST00000371998		831	Ttt/tt																																																																															
KDR	3791	MSKCC	GRCh37	4	55946331	55946331	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0036724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	46	262	0	ENST00000263923.4:c.3849-1G>C		p.X1283_splice	ENST00000263923	NM_002253.2	1283																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153249471	153249471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	98	622	0	ENST00000281708.4:c.1307G>T	p.Ser436Ile	p.S436I	ENST00000281708	NM_033632.3	436	aGt/aTt																																																																															
APC	324	MSKCC	GRCh37	5	112175158	112175158	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	90	229	0	ENST00000257430.4:c.3867del	p.Cys1289Ter	p.C1289*	ENST00000257430	NM_000038.5	1289	tgT/tg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0037135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	250	328	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0037135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	351	565	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0037135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	101	370	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120173	70120173	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	926	415	1	ENST00000245479.2:c.1177del	p.Gln393SerfsTer10	p.Q393Sfs*10	ENST00000245479	NM_000346.3	392	tCc/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0037135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	300	513	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876658468		P-0037135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	453	690	0	ENST00000269305.4:c.577C>G	p.His193Asp	p.H193D	ENST00000269305	NM_001126112.2	193	Cat/Gat																																																																															
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	79	284	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31389107	31389107	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749860839		P-0037135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	471	537	0	ENST00000328111.2:c.2020G>A	p.Glu674Lys	p.E674K	ENST00000328111	NM_006892.3	674	Gaa/Aaa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12044533	12044533	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	160	618	0	ENST00000353533.5:c.1156G>T	p.Asp386Tyr	p.D386Y	ENST00000353533	NM_003010.3	386	Gat/Tat																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619340	37619350	+	frameshift_variant	Frame_Shift_Del	DEL	AGCGGTCTCTG	AGCGGTCTCTG	-			P-0037135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	207	413	0	ENST00000447079.4:c.1018_1028del	p.Arg340SerfsTer7	p.R340Sfs*7	ENST00000447079	NM_015083.1	339	aAGCGGTCTCTG/a																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210574	5210574	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771577284		P-0037135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	254	624	0	ENST00000357368.4:c.5393G>A	p.Arg1798His	p.R1798H	ENST00000357368	NM_002850.3	1798	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112154780	112154780	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	201	596	0	ENST00000257430.4:c.1051G>T	p.Gly351Ter	p.G351*	ENST00000257430	NM_000038.5	351	Gga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	127	436	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0037148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	182	632	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267361	198267361	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs754688962		P-0037148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	97	516	0	ENST00000335508.6:c.1996A>G	p.Lys666Glu	p.K666E	ENST00000335508	NM_012433.2	666	Aag/Gag																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871626	35871626	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	34	323	0	ENST00000216797.5:c.880G>C	p.Glu294Gln	p.E294Q	ENST00000216797	NM_020529.2	294	Gag/Cag																																																																															
ALK	238	MSKCC	GRCh37	2	29445381	29445381	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0037148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	233	660	0	ENST00000389048.3:c.3450+2T>C		p.X1150_splice	ENST00000389048	NM_004304.4	1150																																																																																
HLA-B	3106	MSKCC	GRCh37	6	31323325	31323325	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	25	170	0	ENST00000412585.2:c.664G>C	p.Glu222Gln	p.E222Q	ENST00000412585	NM_005514.6	222	Gag/Cag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0037176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	21	487	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																															
EED	8726	MSKCC	GRCh37	11	85988166	85988166	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	69	380	0	ENST00000263360.6:c.1111G>T	p.Asp371Tyr	p.D371Y	ENST00000263360	NM_003797.3	371	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	146	389	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	177	441	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0037381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	103	242	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578213	7578214	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-	rs1131691030		P-0037381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	279	537	0	ENST00000269305.4:c.635_636del	p.Phe212SerfsTer3	p.F212Sfs*3	ENST00000269305	NM_001126112.2	212	tTT/t																																																																															
APC	324	MSKCC	GRCh37	5	112173582	112173582	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0037381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	71	258	0	ENST00000257430.4:c.2291T>A	p.Leu764Ter	p.L764*	ENST00000257430	NM_000038.5	764	tTa/tAa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81929426	81929426	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1364308657		P-0037381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	181	376	0	ENST00000359376.3:c.1087G>A	p.Gly363Arg	p.G363R	ENST00000359376	NM_002661.3	363	Ggg/Agg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813903	50813903	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1363261645		P-0037381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	207	407	1	ENST00000398568.2:c.1457G>A	p.Arg486His	p.R486H	ENST00000398568	NM_001042412.1	486	cGt/cAt																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62322275	62322275	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs758245234		P-0037381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	267	734	2	ENST00000482936.1:c.2531G>A	p.Arg844Gln	p.R844Q	ENST00000482936		844	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0037388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	248	451	0	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112157646	112157647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	137	410	0	ENST00000257430.4:c.1369dup	p.Ser457PhefsTer3	p.S457Ffs*3	ENST00000257430	NM_000038.5	456	ctt/cTtt																																																																															
IGF2	3481	MSKCC	GRCh37	11	2161420	2161420	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1176659285		P-0037388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	270	441	0	ENST00000434045.2:c.107G>T	p.Trp36Leu	p.W36L	ENST00000434045	NM_001127598.1	36	tGg/tTg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976939	18976946	+	frameshift_variant	Frame_Shift_Del	DEL	GCATGGCG	GCATGGCG	-			P-0037388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	47	352	0	ENST00000262803.5:c.3325_3332del	p.His1109GlyfsTer32	p.H1109Gfs*32	ENST00000262803	NM_002911.3	1108	caGCATGGCGgg/cagg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0037442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	244	580	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0037442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	60	663	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
HGF	3082	MSKCC	GRCh37	7	81346592	81346592	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764869064		P-0037442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	33	373	0	ENST00000222390.5:c.1361C>T	p.Thr454Met	p.T454M	ENST00000222390	NM_000601.4	454	aCg/aTg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981475	201981496	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGCTCTTCTGATGAGCTCAG	CCAGCTCTTCTGATGAGCTCAG	-			P-0037442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	62	597	0	ENST00000359651.3:c.389_410del	p.Ser130PhefsTer18	p.S130Ffs*18	ENST00000359651		130	tCCAGCTCTTCTGATGAGCTCAGt/tt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428659	49428659	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	50	682	0	ENST00000301067.7:c.10291G>T	p.Ala3431Ser	p.A3431S	ENST00000301067	NM_003482.3	3431	Gct/Tct																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38184284	38184284	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2861	212	509	0	ENST00000317025.8:c.1672A>T	p.Ser558Cys	p.S558C	ENST00000317025	NM_023034.1	558	Agt/Tgt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	325	817	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764146326		P-0037483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	492	777	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205050	128205050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	296	803	0	ENST00000341105.2:c.391G>A	p.Ala131Thr	p.A131T	ENST00000341105	NM_032638.4	131	Gct/Act																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226806	2226806	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	164	362	0	ENST00000398665.3:c.4286C>G	p.Ser1429Cys	p.S1429C	ENST00000398665	NM_032482.2	1429	tCt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112175230	112175233	+	frameshift_variant	Frame_Shift_Del	DEL	TAGG	TAGG	-			P-0037483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	159	350	0	ENST00000257430.4:c.3940_3943del	p.Arg1314GlnfsTer6	p.R1314Qfs*6	ENST00000257430	NM_000038.5	1313	acTAGG/ac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0037490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	134	333	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	216	472	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0037490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	286	605	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0037490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	7767	611	2	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0037490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	176	380	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0037490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	163	319	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245456	153245456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	281	551	0	ENST00000281708.4:c.1735G>A	p.Gly579Arg	p.G579R	ENST00000281708	NM_033632.3	579	Ggg/Agg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607759	46607759	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	118	641	0	ENST00000263734.3:c.1948del	p.Thr650GlnfsTer46	p.T650Qfs*46	ENST00000263734	NM_001430.4	650	Aca/ca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385164	41385164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	250	591	0	ENST00000373198.4:c.797G>A	p.Arg266His	p.R266H	ENST00000373198	NM_133170.3	266	cGc/cAc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523100	176523101	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGACAATGT			P-0037490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	260	655	0	ENST00000292408.4:c.1865_1874dup	p.Met626GlyfsTer8	p.M626Gfs*8	ENST00000292408	NM_213647.1	622	gag/gAGGACAATGTag																																																																															
HGF	3082	MSKCC	GRCh37	7	81374372	81374372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	218	453	0	ENST00000222390.5:c.690G>T	p.Lys230Asn	p.K230N	ENST00000222390	NM_000601.4	230	aaG/aaT																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405240	139405240	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1420968156		P-0037490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	118	623	1	ENST00000277541.6:c.2605G>A	p.Asp869Asn	p.D869N	ENST00000277541	NM_017617.3	869	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	65	555	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577029	7577029	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	208	776	0	ENST00000269305.4:c.909del	p.Ser303ArgfsTer42	p.S303Rfs*42	ENST00000269305	NM_001126112.2	303	agC/ag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593446	48593447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0037544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	134	484	0	ENST00000342988.3:c.1198_1199insAA	p.Arg400LysfsTer16	p.R400Kfs*16	ENST00000342988	NM_005359.5	399	-/AA																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068422	26068426	+	frameshift_variant	Frame_Shift_Del	DEL	TTTTC	TTTTC	-			P-0037544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	64	468	0	ENST00000435504.4:c.64_68del	p.Glu22IlefsTer9	p.E22Ifs*9	ENST00000435504		22	GAAAAa/a																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913385		P-0037544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	146	565	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0037544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	81	348	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223188	5223188	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374591804		P-0037750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	10	1016	0	ENST00000357368.4:c.2615G>A	p.Arg872His	p.R872H	ENST00000357368	NM_002850.3	872	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0037760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	98	403	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0037760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	152	606	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
MITF	4286	MSKCC	GRCh37	3	70014298	70014298	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142372494		P-0037760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	151	547	1	ENST00000352241.4:c.1462G>A	p.Gly488Ser	p.G488S	ENST00000352241	NM_198159.2	488	Ggt/Agt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184137	56184137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	92	377	0	ENST00000399503.3:c.4342C>T	p.Pro1448Ser	p.P1448S	ENST00000399503	NM_005921.1	1448	Cca/Tca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	4	394	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59878748	59878748	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1214800958		P-0037868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	70	316	0	ENST00000259008.2:c.1006G>T	p.Asp336Tyr	p.D336Y	ENST00000259008	NM_032043.2	336	Gat/Tat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884563	151884563	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0037868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	60	292	0	ENST00000262189.6:c.4794-2A>T		p.X1598_splice	ENST00000262189	NM_170606.2	1598																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0037893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	208	381	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412643	63412643	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	39	443	0	ENST00000330258.3:c.524G>C	p.Ser175Thr	p.S175T	ENST00000330258	NM_152424.3	175	aGt/aCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0037907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	194	496	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0037907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	47	270	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123239462	123239462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	164	491	0	ENST00000358487.5:c.2375C>T	p.Ser792Leu	p.S792L	ENST00000358487	NM_000141.4	792	tCa/tTa																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233228	69233228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	49	211	0	ENST00000462284.1:c.1093G>A	p.Val365Ile	p.V365I	ENST00000462284	NM_002392.5	365	Gtt/Att																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209247	98209247	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1085	226	539	0	ENST00000331920.6:c.4291G>C	p.Glu1431Gln	p.E1431Q	ENST00000331920	NM_000264.3	1431	Gag/Cag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0037915-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			176	17	447	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
STK40	83931	MSKCC	GRCh37	1	36820971	36820971	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766507697		P-0037948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	131	728	0	ENST00000373129.3:c.406C>T	p.Arg136Cys	p.R136C	ENST00000373129	NM_032017.1	136	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0037948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	505	687	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66218760	66218760	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0037948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	65	222	0	ENST00000273854.3:c.2298G>T	p.Lys766Asn	p.K766N	ENST00000273854	NM_004439.5	766	aaG/aaT																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638533	176638533	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377148087		P-0037948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	129	715	0	ENST00000439151.2:c.3133C>T	p.Arg1045Cys	p.R1045C	ENST00000439151	NM_022455.4	1045	Cgt/Tgt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874178	151874178	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	55	319	0	ENST00000262189.6:c.8360A>G	p.Asn2787Ser	p.N2787S	ENST00000262189	NM_170606.2	2787	aAt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0038051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	358	751	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473779	67473779	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs387906850		P-0038051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	93	552	0	ENST00000327367.4:c.859C>T	p.Arg287Trp	p.R287W	ENST00000327367	NM_005902.3	287	Cgg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735503	40735503	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763584414		P-0038051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	148	621	0	ENST00000373198.4:c.3370G>A	p.Glu1124Lys	p.E1124K	ENST00000373198	NM_133170.3	1124	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs770248150		P-0038051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	157	518	1	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983146	201983146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	121	550	0	ENST00000359651.3:c.995C>T	p.Ala332Val	p.A332V	ENST00000359651		332	gCc/gTc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477097	67477115	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGTCTTCGCAGAGTGCC	GAGGTCTTCGCAGAGTGCC	CA			P-0038051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	358	662	2	ENST00000327367.4:c.904_922delinsCA	p.Glu302HisfsTer3	p.E302Hfs*3	ENST00000327367	NM_005902.3	302	GAGGTCTTCGCAGAGTGCCtc/CAtc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99156029	99156029	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	115	558	1	ENST00000074304.5:c.709A>T	p.Thr237Ser	p.T237S	ENST00000074304	NM_001134224.1	237	Acc/Tcc																																																																															
CASP8	841	MSKCC	GRCh37	2	202141611	202141611	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	108	468	0	ENST00000358485.4:c.899A>C	p.Asn300Thr	p.N300T	ENST00000358485	NM_001080125.1	300	aAt/aCt																																																																															
APC	324	MSKCC	GRCh37	5	112175558	112175561	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	-			P-0038051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	134	370	0	ENST00000257430.4:c.4268_4271del	p.Leu1423GlnfsTer49	p.L1423Qfs*49	ENST00000257430	NM_000038.5	1423	CTTCca/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0038498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	307	674	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0038498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	204	456	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
SDHB	6390	MSKCC	GRCh37	1	17349179	17349179	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782604		P-0038498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	83	574	1	ENST00000375499.3:c.689G>A	p.Arg230His	p.R230H	ENST00000375499	NM_003000.2	230	cGc/cAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266493	41266501	+	inframe_deletion	In_Frame_Del	DEL	CTATGTTCC	CTATGTTCC	-			P-0038498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	118	491	0	ENST00000349496.5:c.292_300del	p.Met98_Pro100del	p.M98_P100del	ENST00000349496	NM_001904.3	97	gCTATGTTCCct/gct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	433	412	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936093	178936093	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913275		P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	237	674	3	ENST00000263967.3:c.1635G>T	p.Glu545Asp	p.E545D	ENST00000263967	NM_006218.2	545	gaG/gaT																																																																															
ATRX	546	MSKCC	GRCh37	X	76907621	76907621	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	189	477	0	ENST00000373344.5:c.4540C>T	p.Arg1514Ter	p.R1514*	ENST00000373344	NM_000489.3	1514	Cga/Tga																																																																															
STAG2	10735	MSKCC	GRCh37	X	123182910	123182910	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	116	325	0	ENST00000218089.9:c.875T>C	p.Val292Ala	p.V292A	ENST00000218089	NM_001042749.1	292	gTg/gCg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732946	30732946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	123	410	0	ENST00000359013.4:c.1634G>A	p.Cys545Tyr	p.C545Y	ENST00000359013	NM_001024847.2	545	tGc/tAc																																																																															
MSH3	4437	MSKCC	GRCh37	5	80064770	80064770	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1261908217		P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	311	497	1	ENST00000265081.6:c.2201G>A	p.Arg734Gln	p.R734Q	ENST00000265081	NM_002439.4	734	cGa/cAa																																																																															
CBL	867	MSKCC	GRCh37	11	119169109	119169109	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373587039		P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	190	532	1	ENST00000264033.4:c.2293G>A	p.Glu765Lys	p.E765K	ENST00000264033	NM_005188.3	765	Gag/Aag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117835	70117836	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	185	650	0	ENST00000245479.2:c.304_305dup	p.Pro103SerfsTer8	p.P103Sfs*8	ENST00000245479	NM_000346.3	101	-/AA																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5208247	5208247	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	148	680	1	ENST00000357368.4:c.5642+1G>A		p.X1881_splice	ENST00000357368	NM_002850.3	1881																																																																																
EP300	2033	MSKCC	GRCh37	22	41564520	41564521	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	234	547	0	ENST00000263253.7:c.3942_3943del	p.Asn1314LysfsTer3	p.N1314Kfs*3	ENST00000263253	NM_001429.3	1314	aaTCac/aaac																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715720	30715720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	143	329	2	ENST00000359013.4:c.1453C>G	p.Arg485Gly	p.R485G	ENST00000359013	NM_001024847.2	485	Cgc/Ggc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265774	41266180	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACC	TCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACC	-			P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	183	42	0	ENST00000349496.5:c.13+204_179del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
KDR	3791	MSKCC	GRCh37	4	55981474	55981474	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	165	435	0	ENST00000263923.4:c.463del	p.Ser155GlnfsTer37	p.S155Qfs*37	ENST00000263923	NM_002253.2	155	Tca/ca																																																																															
TET2	54790	MSKCC	GRCh37	4	106196375	106196375	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1311791804		P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	136	336	0	ENST00000380013.4:c.4708A>G	p.Met1570Val	p.M1570V	ENST00000380013	NM_001127208.2	1570	Atg/Gtg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057248	180057248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775547530		P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	471	821	2	ENST00000261937.6:c.490G>A	p.Gly164Ser	p.G164S	ENST00000261937	NM_182925.4	164	Ggc/Agc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662614	117662614	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs751986538		P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	144	437	2	ENST00000368508.3:c.4851G>T	p.Arg1617Ser	p.R1617S	ENST00000368508	NM_002944.2	1617	agG/agT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117708157	117708157	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	112	437	1	ENST00000368508.3:c.2020G>T	p.Glu674Ter	p.E674*	ENST00000368508	NM_002944.2	674	Gaa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151947938	151947938	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	134	480	0	ENST00000262189.6:c.1735G>T	p.Ala579Ser	p.A579S	ENST00000262189	NM_170606.2	579	Gcg/Tcg																																																																															
ATRX	546	MSKCC	GRCh37	X	76938212	76938212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	197	600	0	ENST00000373344.5:c.2536G>T	p.Asp846Tyr	p.D846Y	ENST00000373344	NM_000489.3	846	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	42	349	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0039658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	67	568	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044539	47044548	+	frameshift_variant	Frame_Shift_Del	DEL	TGCGAGATGA	TGCGAGATGA	-			P-0039658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	101	592	0	ENST00000329236.7:c.1802_1811del	p.Leu601ProfsTer22	p.L601Pfs*22	ENST00000329236	NM_001204466.1	601	cTGCGAGATGAc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-	rs587780067		P-0039683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	37	524	1	ENST00000269305.4:c.365_366del	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858279	27858279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	41	582	2	ENST00000359303.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000359303	NM_003535.2	98	Gag/Aag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0039693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	236	556	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0039693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	251	654	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0039693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	104	370	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173374	112173374	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	167	363	1	ENST00000257430.4:c.2083C>T	p.Gln695Ter	p.Q695*	ENST00000257430	NM_000038.5	695	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175630	112175630	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	67	378	0	ENST00000257430.4:c.4339del	p.Gln1447LysfsTer26	p.Q1447Kfs*26	ENST00000257430	NM_000038.5	1447	Caa/aa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100594	157100594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	137	310	0	ENST00000346085.5:c.1531G>A	p.Gly511Ser	p.G511S	ENST00000346085	NM_020732.3	511	Ggc/Agc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741739	145741740	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGGCTGGGGGCTCCCCACACGGATGCTGACTT			P-0039693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	124	556	0	ENST00000428558.2:c.731_763dup	p.Pro254_Ser255insLysValSerIleArgValGlySerProGlnPro	p.P254_S255insKVSIRVGSPQP	ENST00000428558	NM_004260.3	255	agc/aAAGTCAGCATCCGTGTGGGGAGCCCCCAGCCCAgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	145	810	0	ENST00000269305.4:c.497C>G	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tGa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118941	115118941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	125	276	1	ENST00000257566.3:c.400C>T	p.Pro134Ser	p.P134S	ENST00000257566	NM_016569.3	134	Cct/Tct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692847	89692847	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs398123321		P-0039930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	68	192	2	ENST00000371953.3:c.331T>C	p.Trp111Arg	p.W111R	ENST00000371953	NM_000314.4	111	Tgg/Cgg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944188	71944188	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	120	682	0	ENST00000298229.2:c.2021A>C	p.His674Pro	p.H674P	ENST00000298229	NM_001567.3	674	cAc/cCc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71945399	71945400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1370512716		P-0039930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	95	863	0	ENST00000298229.2:c.2289dup	p.Lys764GlnfsTer19	p.K764Qfs*19	ENST00000298229	NM_001567.3	763	acc/aCcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0039964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	109	326	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46277762	46277762	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	68	317	0	ENST00000371998.3:c.3560G>C	p.Ser1187Thr	p.S1187T	ENST00000371998		1187	aGc/aCc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	56	338	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	141	641	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	28	295	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	26	199	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	168	644	1	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129329	152129329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	58	614	3	ENST00000206249.3:c.287del	p.Gly96ValfsTer13	p.G96Vfs*13	ENST00000206249	NM_000125.3	94	ctG/ct																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	99	467	3	ENST00000268489.5:c.5677_5678del	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912580		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	56	310	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	111	474	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161324	55161324	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514550		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	43	355	0	ENST00000257290.5:c.3155C>T	p.Thr1052Met	p.T1052M	ENST00000257290	NM_006206.4	1052	aCg/aTg																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	64	438	10	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981861	101981863	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	164	721	1	ENST00000282441.5:c.286_288del	p.Phe96del	p.F96del	ENST00000282441	NM_001130145.2	94	tcCTTc/tcc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729601	41729601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	92	465	0	ENST00000242208.4:c.928C>T	p.Arg310Trp	p.R310W	ENST00000242208	NM_002192.2	310	Cgg/Tgg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86674234	86674234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	41	244	0	ENST00000274376.6:c.2366G>A	p.Arg789Gln	p.R789Q	ENST00000274376	NM_002890.2	789	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112170660	112170660	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	31	285	0	ENST00000257430.4:c.1759del	p.Ser587AlafsTer3	p.S587Afs*3	ENST00000257430	NM_000038.5	586	Aaa/aa																																																																															
MGA	23269	MSKCC	GRCh37	15	42054540	42054541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	64	308	1	ENST00000219905.7:c.7731dup	p.Asp2578ArgfsTer45	p.D2578Rfs*45	ENST00000219905	NM_001164273.1	2575	aga/agAa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097781	8097781	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763176056		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	163	702	0	ENST00000346208.3:c.163G>A	p.Gly55Ser	p.G55S	ENST00000346208		55	Ggt/Agt																																																																															
ATRX	546	MSKCC	GRCh37	X	76937603	76937603	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	30	243	0	ENST00000373344.5:c.3145del	p.Ile1049Ter	p.I1049*	ENST00000373344	NM_000489.3	1049	Ata/ta																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	89	468	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711903	89711903	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs864622341		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	62	392	0	ENST00000371953.3:c.521A>G	p.Tyr174Cys	p.Y174C	ENST00000371953	NM_000314.4	174	tAt/tGt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391361	139391361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	167	720	2	ENST00000277541.6:c.6830C>A	p.Pro2277His	p.P2277H	ENST00000277541	NM_017617.3	2277	cCt/cAt																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182677	38182678	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	118	401	0	ENST00000396334.3:c.834dup	p.Ser279GlnfsTer153	p.S279Qfs*153	ENST00000396334	NM_002468.4	277	ttc/ttCc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166763	32166763	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761314959		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	152	739	0	ENST00000375023.3:c.4475G>A	p.Arg1492Gln	p.R1492Q	ENST00000375023	NM_004557.3	1492	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434325	49434325	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	198	805	0	ENST00000301067.7:c.7228C>T	p.Arg2410Ter	p.R2410*	ENST00000301067	NM_003482.3	2410	Cga/Tga																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98268792	98268793	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	109	467	0	ENST00000331920.6:c.290dup	p.Asn97LysfsTer43	p.N97Kfs*43	ENST00000331920	NM_000264.3	97	aac/aaAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176665377	176665377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	80	340	0	ENST00000439151.2:c.4061G>A	p.Gly1354Asp	p.G1354D	ENST00000439151	NM_022455.4	1354	gGc/gAc																																																																															
STK40	83931	MSKCC	GRCh37	1	36809860	36809860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	105	524	2	ENST00000373129.3:c.745C>T	p.Pro249Ser	p.P249S	ENST00000373129	NM_032017.1	249	Ccg/Tcg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31493321	31493322	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1330233722		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	48	301	0	ENST00000344624.3:c.1834dup	p.Leu612ProfsTer8	p.L612Pfs*8	ENST00000344624		612	ctg/cCtg																																																																															
HRAS	3265	MSKCC	GRCh37	11	533536	533536	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369106578		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	158	698	2	ENST00000311189.7:c.367C>T	p.Arg123Cys	p.R123C	ENST00000311189		123	Cgc/Tgc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946996	71946996	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs754591389		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	199	818	1	ENST00000298229.2:c.2845C>T	p.Arg949Ter	p.R949*	ENST00000298229	NM_001567.3	949	Cga/Tga																																																																															
IRF4	3662	MSKCC	GRCh37	6	394891	394891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	52	459	0	ENST00000380956.4:c.287G>A	p.Arg96His	p.R96H	ENST00000380956	NM_001195286.1	96	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023993	27023993	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs932715321		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	17	97	0	ENST00000324856.7:c.1099A>G	p.Ser367Gly	p.S367G	ENST00000324856	NM_006015.4	367	Agc/Ggc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138881	64138881	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	104	563	0	ENST00000334205.4:c.2248A>G	p.Asn750Asp	p.N750D	ENST00000334205	NM_003942.2	750	Aac/Gac																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94209522	94209523	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	40	292	0	ENST00000323929.3:c.591dup	p.Val198SerfsTer10	p.V198Sfs*10	ENST00000323929	NM_005591.3	197	-/A																																																																															
PGR	5241	MSKCC	GRCh37	11	100999273	100999273	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767280663		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	126	756	1	ENST00000325455.5:c.529G>A	p.Gly177Arg	p.G177R	ENST00000325455	NM_001202474.3	177	Ggg/Agg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102201943	102201943	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	29	218	0	ENST00000263464.3:c.1295G>T	p.Arg432Ile	p.R432I	ENST00000263464	NM_001165.4	432	aGa/aTa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427572	427572	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	63	389	0	ENST00000399788.2:c.2597A>G	p.Asp866Gly	p.D866G	ENST00000399788	NM_001042603.1	866	gAt/gGt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18491370	18491372	+	inframe_deletion	In_Frame_Del	DEL	ATA	ATA	-			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	54	170	0	ENST00000266497.5:c.1286_1288del	p.Asn429del	p.N429del	ENST00000266497		428	tATAat/tat																																																																															
ARID2	196528	MSKCC	GRCh37	12	46125084	46125084	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	38	176	0	ENST00000334344.6:c.271C>T	p.Gln91Ter	p.Q91*	ENST00000334344	NM_152641.2	91	Cag/Tag																																																																															
TSHR	7253	MSKCC	GRCh37	14	81554314	81554314	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	67	346	0	ENST00000298171.2:c.334A>T	p.Arg112Trp	p.R112W	ENST00000298171	NM_000369.2	112	Agg/Tgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992904	72992904	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs778464341		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	158	656	0	ENST00000268489.5:c.1141G>T	p.Ala381Ser	p.A381S	ENST00000268489	NM_006885.3	381	Gcg/Tcg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37884014	37884014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	168	678	0	ENST00000269571.5:c.3485C>T	p.Pro1162Leu	p.P1162L	ENST00000269571		1162	cCt/cTt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533066	63533066	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	112	572	0	ENST00000307078.5:c.1828del	p.Arg610GlyfsTer79	p.R610Gfs*79	ENST00000307078	NM_004655.3	610	Cgg/gg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218786	36218786	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	136	641	0	ENST00000222270.7:c.4397G>T	p.Ser1466Ile	p.S1466I	ENST00000222270	NM_014727.1	1466	aGc/aTc																																																																															
REL	5966	MSKCC	GRCh37	2	61121668	61121668	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373752427		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	36	299	0	ENST00000295025.8:c.290G>A	p.Arg97His	p.R97H	ENST00000295025	NM_002908.2	97	cGc/cAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266493	41266493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	73	340	0	ENST00000349496.5:c.290C>A	p.Ala97Asp	p.A97D	ENST00000349496	NM_001904.3	97	gCt/gAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125290	47125290	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	32	356	1	ENST00000409792.3:c.5980del	p.Arg1994GlyfsTer12	p.R1994Gfs*12	ENST00000409792	NM_014159.6	1994	Agg/gg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71015104	71015104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757539300		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	69	313	0	ENST00000318789.4:c.1826C>T	p.Ala609Val	p.A609V	ENST00000318789	NM_032682.5	609	gCa/gTa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149440513	149440515	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	113	608	0	ENST00000286301.3:c.1879_1881del	p.Lys627del	p.K627del	ENST00000286301	NM_005211.3	627	AAG/-																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675522	30675523	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	122	666	0	ENST00000376406.3:c.2833_2834del	p.Asp945TyrfsTer70	p.D945Yfs*70	ENST00000376406	NM_014641.2	945	GAt/t																																																																															
FYN	2534	MSKCC	GRCh37	6	111995801	111995802	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	26	404	0	ENST00000368678.4:c.1296dup	p.Glu433ArgfsTer13	p.E433Rfs*13	ENST00000368678		432	-/C																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419998	152419998	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	83	573	0	ENST00000206249.3:c.1685A>C	p.Glu562Ala	p.E562A	ENST00000206249	NM_000125.3	562	gAg/gCg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162394441	162394442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	44	286	0	ENST00000366898.1:c.626dup	p.Phe210LeufsTer2	p.F210Lfs*2	ENST00000366898	NM_004562.2	209	ttc/ttTc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772594	135772594	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	67	464	0	ENST00000298552.3:c.2952A>C	p.Glu984Asp	p.E984D	ENST00000298552	NM_001162426.1	984	gaA/gaC																																																																															
MED12	9968	MSKCC	GRCh37	X	70339930	70339930	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866469400		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	51	463	1	ENST00000374080.3:c.463C>T	p.Arg155Trp	p.R155W	ENST00000374080		155	Cgg/Tgg																																																																															
MED12	9968	MSKCC	GRCh37	X	70342401	70342401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	71	542	1	ENST00000374080.3:c.1292G>A	p.Arg431Gln	p.R431Q	ENST00000374080		431	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0040040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	149	333	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437606	56437606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886926322		P-0040040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	86	521	1	ENST00000407977.2:c.856C>T	p.Arg286Trp	p.R286W	ENST00000407977		286	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16247440	16247440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	37	253	0	ENST00000375759.3:c.1711G>C	p.Glu571Gln	p.E571Q	ENST00000375759	NM_015001.2	571	Gag/Cag																																																																															
CBL	867	MSKCC	GRCh37	11	119148931	119148931	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	11	384	0	ENST00000264033.4:c.1151G>C	p.Cys384Ser	p.C384S	ENST00000264033	NM_005188.3	384	tGt/tCt																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134378	41134378	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	64	502	0	ENST00000379561.5:c.1250C>A	p.Pro417His	p.P417H	ENST00000379561	NM_002015.3	417	cCc/cAc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43699623	43699623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	44	520	0	ENST00000382044.4:c.5892C>G	p.Phe1964Leu	p.F1964L	ENST00000382044	NM_001141980.1	1964	ttC/ttG																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46602843	46602843	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	65	686	0	ENST00000263734.3:c.901C>T	p.Gln301Ter	p.Q301*	ENST00000263734	NM_001430.4	301	Cag/Tag																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872563	136872563	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	26	317	0	ENST00000241393.3:c.935C>G	p.Ser312Cys	p.S312C	ENST00000241393	NM_003467.2	312	tCt/tGt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660493	227660493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	59	581	0	ENST00000305123.5:c.2962G>A	p.Asp988Asn	p.D988N	ENST00000305123	NM_005544.2	988	Gac/Aac																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52702579	52702579	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	14	452	0	ENST00000394830.3:c.319G>T	p.Asp107Tyr	p.D107Y	ENST00000394830	NM_018313.4	107	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	50	291	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0040064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	135	559	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593532	48593532	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	37	180	0	ENST00000342988.3:c.1283A>C	p.Lys428Thr	p.K428T	ENST00000342988	NM_005359.5	428	aAg/aCg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0040064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	72	283	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459759	149459759	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374166176		P-0040064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	120	618	1	ENST00000286301.3:c.448C>T	p.Arg150Cys	p.R150C	ENST00000286301	NM_005211.3	150	Cgc/Tgc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49927989	49927989	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374259168		P-0040064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	122	554	0	ENST00000296474.3:c.3739G>A	p.Ala1247Thr	p.A1247T	ENST00000296474	NM_002447.2	1247	Gct/Act																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554476	63554476	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1186148018		P-0040064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	94	476	0	ENST00000307078.5:c.263A>G	p.Asp88Gly	p.D88G	ENST00000307078	NM_004655.3	88	gAt/gGt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622174	1622174	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756170287		P-0040064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	113	604	0	ENST00000344749.5:c.701C>T	p.Ala234Val	p.A234V	ENST00000344749	NM_001136139.2	234	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175974	112175974	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	40	180	0	ENST00000257430.4:c.4684del	p.Asp1562ThrfsTer3	p.D1562Tfs*3	ENST00000257430	NM_000038.5	1561	aaG/aa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371718	55371718	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	100	504	0	ENST00000297316.4:c.408del	p.Lys136AsnfsTer10	p.K136Nfs*10	ENST00000297316	NM_022454.3	136	aaG/aa																																																																															
AGO2	27161	MSKCC	GRCh37	8	141566342	141566342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	67	319	0	ENST00000220592.5:c.1070C>T	p.Thr357Met	p.T357M	ENST00000220592	NM_012154.3	357	aCg/aTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412987	63412987	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	117	716	0	ENST00000330258.3:c.180del	p.Phe60LeufsTer40	p.F60Lfs*40	ENST00000330258	NM_152424.3	60	ttT/tt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0040087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	139	341	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578266	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	456	567	0	ENST00000269305.4:c.583dup	p.Ile195AsnfsTer14	p.I195Nfs*14	ENST00000269305	NM_001126112.2	195	atc/aAtc																																																																															
RB1	5925	MSKCC	GRCh37	13	48954321	48954321	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	91	223	0	ENST00000267163.4:c.1446del	p.His483IlefsTer12	p.H483Ifs*12	ENST00000267163	NM_000321.2	481	aTt/at																																																																															
APC	324	MSKCC	GRCh37	5	112176018	112176018	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	103	223	0	ENST00000257430.4:c.4728del	p.Glu1577AsnfsTer73	p.E1577Nfs*73	ENST00000257430	NM_000038.5	1576	gAa/ga																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549031	21549031	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	73	208	0	ENST00000382592.4:c.3245G>T	p.Gly1082Val	p.G1082V	ENST00000382592	NM_014572.2	1082	gGc/gTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292418	15292418	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1258	264	719	0	ENST00000263388.2:c.2761T>G	p.Cys921Gly	p.C921G	ENST00000263388	NM_000435.2	921	Tgc/Ggc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32171922	32171922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	291	352	0	ENST00000375023.3:c.3110G>A	p.Gly1037Glu	p.G1037E	ENST00000375023	NM_004557.3	1037	gGa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0040263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	79	286	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	95	301	1	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0040263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	230	356	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266611	198266611	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs755415626		P-0040263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	91	302	0	ENST00000335508.6:c.2225G>A	p.Gly742Asp	p.G742D	ENST00000335508	NM_012433.2	742	gGt/gAt																																																																															
EP300	2033	MSKCC	GRCh37	22	41568574	41568574	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	168	462	0	ENST00000263253.7:c.4524C>G	p.Phe1508Leu	p.F1508L	ENST00000263253	NM_001429.3	1508	ttC/ttG																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163863	32163863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	205	606	0	ENST00000375023.3:c.5363G>A	p.Gly1788Glu	p.G1788E	ENST00000375023	NM_004557.3	1788	gGg/gAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	356	195	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0040342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	179	445	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141427	11141427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	153	409	0	ENST00000344626.4:c.3404G>A	p.Arg1135Gln	p.R1135Q	ENST00000344626	NM_003072.3	1135	cGg/cAg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932813	39932813	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	179	222	0	ENST00000378444.4:c.1786C>T	p.Gln596Ter	p.Q596*	ENST00000378444	NM_001123385.1	596	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821970	72821970	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	68	381	0	ENST00000268489.5:c.10205C>A	p.Pro3402Gln	p.P3402Q	ENST00000268489	NM_006885.3	3402	cCa/cAa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981731	70981731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	83	570	2	ENST00000276594.2:c.365C>T	p.Ala122Val	p.A122V	ENST00000276594	NM_024504.3	122	gCg/gTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76937486	76937486	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	95	131	0	ENST00000373344.5:c.3262G>C	p.Gly1088Arg	p.G1088R	ENST00000373344	NM_000489.3	1088	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0040380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	319	493	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807914	3807914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	67	344	0	ENST00000262367.5:c.3505C>T	p.Arg1169Cys	p.R1169C	ENST00000262367	NM_004380.2	1169	Cgc/Tgc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041265	47041265	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	72	454	0	ENST00000329236.7:c.1459C>T	p.Pro487Ser	p.P487S	ENST00000329236	NM_001204466.1	487	Cct/Tct																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004246	150004246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	30	174	0	ENST00000253339.5:c.1979G>A	p.Arg660His	p.R660H	ENST00000253339		660	cGt/cAt																																																																															
CDK8	1024	MSKCC	GRCh37	13	26828860	26828860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	62	303	0	ENST00000381527.3:c.82G>A	p.Gly28Ser	p.G28S	ENST00000381527	NM_001260.1	28	Ggc/Agc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912606	32912606	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	116	288	0	ENST00000380152.3:c.4114T>C	p.Phe1372Leu	p.F1372L	ENST00000380152		1372	Ttt/Ctt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57478832	57478832	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	43	260	0	ENST00000371085.3:c.418T>G	p.Phe140Val	p.F140V	ENST00000371085	NM_000516.4	140	Ttt/Gtt																																																																															
APC	324	MSKCC	GRCh37	5	112174517	112174517	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	61	186	0	ENST00000257430.4:c.3227del	p.Pro1076LeufsTer50	p.P1076Lfs*50	ENST00000257430	NM_000038.5	1076	Cct/ct																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0040385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	596	525	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	330	654	0	ENST00000206249.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000206249	NM_000125.3	536	cTc/cCc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168749	56168749	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	219	484	0	ENST00000399503.3:c.1603C>T	p.Gln535Ter	p.Q535*	ENST00000399503	NM_005921.1	535	Caa/Taa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177812	56177812	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	203	369	0	ENST00000399503.3:c.2785G>T	p.Glu929Ter	p.E929*	ENST00000399503	NM_005921.1	929	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	164	390	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0040447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	168	661	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524486	44524486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	65	240	0	ENST00000291552.4:c.71T>C	p.Ile24Thr	p.I24T	ENST00000291552	NM_006758.2	24	aTt/aCt																																																																															
EZH2	2146	MSKCC	GRCh37	7	148512041	148512041	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	84	328	1	ENST00000320356.2:c.1637A>T	p.Asn546Ile	p.N546I	ENST00000320356	NM_004456.4	546	aAt/aTt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691945	30691945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	21	332	1	ENST00000359013.4:c.522C>A	p.Phe174Leu	p.F174L	ENST00000359013	NM_001024847.2	174	ttC/ttA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0040492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	305	730	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	201	452	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0040492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	169	726	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0040492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	174	388	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	112	153	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519896		P-0040492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	179	352	0	ENST00000281708.4:c.1514G>T	p.Arg505Leu	p.R505L	ENST00000281708	NM_033632.3	505	cGc/cTc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206908	162206908	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1233588284		P-0040492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	60	439	0	ENST00000366898.1:c.767G>A	p.Arg256His	p.R256H	ENST00000366898	NM_004562.2	256	cGc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133209250	133209250	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1462887616		P-0040492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	332	759	2	ENST00000320574.5:c.6136G>A	p.Gly2046Arg	p.G2046R	ENST00000320574	NM_006231.2	2046	Gga/Aga																																																																															
MGA	23269	MSKCC	GRCh37	15	42042476	42042477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	73	550	0	ENST00000219905.7:c.6672dup	p.Leu2225ThrfsTer8	p.L2225Tfs*8	ENST00000219905	NM_001164273.1	2224	tta/ttAa																																																																															
APC	324	MSKCC	GRCh37	5	112175336	112175337	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAAAGCTGTTGA			P-0040492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	79	235	0	ENST00000257430.4:c.4047_4059dup	p.Phe1354GlnfsTer4	p.F1354Qfs*4	ENST00000257430	NM_000038.5	1349	cac/cACAAAGCTGTTGAac																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739487	145739487	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	209	848	2	ENST00000428558.2:c.1883T>C	p.Leu628Pro	p.L628P	ENST00000428558	NM_004260.3	628	cTt/cCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	116	407	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0040494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	273	771	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738280	145738280	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372205013		P-0040494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	306	958	0	ENST00000428558.2:c.2705G>A	p.Arg902Gln	p.R902Q	ENST00000428558	NM_004260.3	902	cGg/cAg																																																																															
ARAF	369	MSKCC	GRCh37	X	47430809	47430809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	182	809	3	ENST00000377045.4:c.1774G>A	p.Asp592Asn	p.D592N	ENST00000377045	NM_001654.4	592	Gat/Aat																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440658	56440661	+	frameshift_variant	Frame_Shift_Del	DEL	TCAA	TCAA	-			P-0040494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	225	734	0	ENST00000407977.2:c.557_560del	p.Ile186SerfsTer2	p.I186Sfs*2	ENST00000407977		186	aTTGAg/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	103	374	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0040550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	86	720	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0040550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	99	365	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517201		P-0040550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	19	547	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																															
APC	324	MSKCC	GRCh37	5	112175925	112175925	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs863225356		P-0040550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	36	178	0	ENST00000257430.4:c.4634C>G	p.Ser1545Ter	p.S1545*	ENST00000257430	NM_000038.5	1545	tCa/tGa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982378	201982379	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0040550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	256	755	0	ENST00000359651.3:c.758_759insTT	p.Ser254Ter	p.S254*	ENST00000359651		253	ctg/cTTtg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487911	56487911	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762488062		P-0040550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	51	580	0	ENST00000267101.3:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000267101	NM_001982.3	548	Gaa/Aaa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645155	67645155	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	80	550	0	ENST00000264010.4:c.420T>G	p.Asn140Lys	p.N140K	ENST00000264010	NM_006565.3	140	aaT/aaG																																																																															
FLT4	2324	MSKCC	GRCh37	5	180051059	180051059	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs747401546		P-0040550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	65	521	0	ENST00000261937.6:c.1424G>A	p.Arg475Gln	p.R475Q	ENST00000261937	NM_182925.4	475	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0040604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	25	660	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350009	15350009	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	10	858	0	ENST00000263377.2:c.3643del	p.Ser1215ProfsTer27	p.S1215Pfs*27	ENST00000263377	NM_058243.2	1215	Tcc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416114	49416114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	86	545	0	ENST00000301067.7:c.16361G>A	p.Arg5454Gln	p.R5454Q	ENST00000301067	NM_003482.3	5454	cGa/cAa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21620140	21620140	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767021401		P-0040697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	105	597	0	ENST00000382592.4:c.26C>T	p.Thr9Met	p.T9M	ENST00000382592	NM_014572.2	9	aCg/aTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3645656	3645656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	40	853	1	ENST00000294008.3:c.1963T>C	p.Phe655Leu	p.F655L	ENST00000294008	NM_032444.2	655	Ttt/Ctt																																																																															
CDH1	999	MSKCC	GRCh37	16	68867293	68867293	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	424	638	0	ENST00000261769.5:c.2542del	p.Leu848Ter	p.L848*	ENST00000261769	NM_004360.3	847	tCc/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576918	7576924	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TGGGCAG	TGGGCAG	-			P-0040697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	288	746	0	ENST00000269305.4:c.922_928del	p.Leu308ThrfsTer35	p.L308Tfs*35	ENST00000269305	NM_001126112.2	308	CTGCCCAac/ac																																																																															
NF1	4763	MSKCC	GRCh37	17	29556101	29556101	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	28	243	0	ENST00000358273.4:c.2468G>C	p.Gly823Ala	p.G823A	ENST00000358273	NM_001042492.2	823	gGa/gCa																																																																															
APC	324	MSKCC	GRCh37	5	112175352	112175359	+	frameshift_variant	Frame_Shift_Del	DEL	TTTCTTCA	TTTCTTCA	-			P-0040697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	40	286	0	ENST00000257430.4:c.4061_4068del	p.Phe1354TrpfsTer18	p.F1354Wfs*18	ENST00000257430	NM_000038.5	1354	tTTTCTTCA/t																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87366972	87366972	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	50	673	0	ENST00000277120.3:c.1368G>C	p.Leu456Phe	p.L456F	ENST00000277120		456	ttG/ttC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0040727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	283	678	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678532	88678532	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	43	331	0	ENST00000360948.2:c.1004G>A	p.Trp335Ter	p.W335*	ENST00000360948	NM_001012338.2	335	tGg/tAg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2126172	2126172	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs45517262		P-0040727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	153	463	0	ENST00000219476.3:c.2742+1G>T		p.X914_splice	ENST00000219476	NM_000548.3	914																																																																																
SETD2	29072	MSKCC	GRCh37	3	47164286	47164286	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	78	244	0	ENST00000409792.3:c.1840T>G	p.Ser614Ala	p.S614A	ENST00000409792	NM_014159.6	614	Tct/Gct																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0040743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	99	580	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0040743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	99	451	0	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
TBX3	6926	MSKCC	GRCh37	12	115117410	115117410	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	146	387	0	ENST00000257566.3:c.764T>A	p.Val255Glu	p.V255E	ENST00000257566	NM_016569.3	255	gTa/gAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181855	56181855	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	119	345	0	ENST00000399503.3:c.4079T>A	p.Leu1360His	p.L1360H	ENST00000399503	NM_005921.1	1360	cTc/cAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183241	56183241	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	179	475	0	ENST00000399503.3:c.4151T>G	p.Leu1384Arg	p.L1384R	ENST00000399503	NM_005921.1	1384	cTa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0040784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	379	396	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180040101	180040101	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909652		P-0040784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	270	304	1	ENST00000261937.6:c.3341C>T	p.Pro1114Leu	p.P1114L	ENST00000261937	NM_182925.4	1114	cCg/cTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552641	18552641	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	90	290	0	ENST00000266497.5:c.2052C>A	p.Cys684Ter	p.C684*	ENST00000266497		684	tgC/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	193	727	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670777	134670777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	61	576	0	ENST00000398015.3:c.688G>A	p.Glu230Lys	p.E230K	ENST00000398015	NM_004441.4	230	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	51	355	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0040895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	52	519	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
CALR	811	MSKCC	GRCh37	19	13050956	13050957	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	31	397	0	ENST00000316448.5:c.488dup	p.Cys163TrpfsTer4	p.C163Wfs*4	ENST00000316448	NM_004343.3	163	tgc/tGgc																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598910	28598910	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758133085		P-0040917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	76	689	0	ENST00000253063.3:c.470G>A	p.Arg157His	p.R157H	ENST00000253063	NM_031459.4	157	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	104	395	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782329		P-0040917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	168	626	1	ENST00000269305.4:c.746G>A	p.Arg249Lys	p.R249K	ENST00000269305	NM_001126112.2	249	aGg/aAg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372153	45372153	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	42	432	0	ENST00000262160.6:c.1016A>T	p.Tyr339Phe	p.Y339F	ENST00000262160	NM_005901.5	339	tAc/tTc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010496	48010496	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs34014629		P-0040917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	52	559	0	ENST00000234420.5:c.124C>T	p.Pro42Ser	p.P42S	ENST00000234420	NM_000179.2	42	Cct/Tct																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749443	41749443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	62	507	0	ENST00000226382.2:c.352G>A	p.Ala118Thr	p.A118T	ENST00000226382	NM_003924.3	118	Gcg/Acg																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0040917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	63	443	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174461	112174461	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	32	304	0	ENST00000257430.4:c.3171del	p.Asp1058MetfsTer3	p.D1058Mfs*3	ENST00000257430	NM_000038.5	1057	gAa/ga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527925	157527925	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	67	541	0	ENST00000346085.5:c.5650del	p.Arg1884GlyfsTer90	p.R1884Gfs*90	ENST00000346085	NM_020732.3	1884	Cgg/gg																																																																															
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs199469669		P-0040917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	88	327	0	ENST00000374080.3:c.130G>T	p.Gly44Cys	p.G44C	ENST00000374080		44	Ggt/Tgt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777114	9777114	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs754116182		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	291	868	2	ENST00000377346.4:c.883del	p.Gln295ArgfsTer39	p.Q295Rfs*39	ENST00000377346	NM_005026.3	293	gCc/gc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780884	9780884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	183	886	0	ENST00000377346.4:c.1606C>T	p.His536Tyr	p.H536Y	ENST00000377346	NM_005026.3	536	Cat/Tat																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187758	11187758	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	209	651	0	ENST00000361445.4:c.6139A>G	p.Met2047Val	p.M2047V	ENST00000361445	NM_004958.3	2047	Atg/Gtg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099089	27099089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	148	473	0	ENST00000324856.7:c.3505C>T	p.Pro1169Ser	p.P1169S	ENST00000324856	NM_006015.4	1169	Cca/Tca																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797213	45797213	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	198	739	0	ENST00000372115.3:c.1160T>C	p.Leu387Pro	p.L387P	ENST00000372115	NM_001048171.1	387	cTg/cCg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726564	46726564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	140	555	0	ENST00000371975.4:c.643G>A	p.Val215Met	p.V215M	ENST00000371975	NM_003579.3	215	Gtg/Atg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78414949	78414949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	147	446	0	ENST00000370768.2:c.1817G>A	p.Gly606Asp	p.G606D	ENST00000370768	NM_003902.3	606	gGt/gAt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115275287	115275287	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs746569183		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	193	613	0	ENST00000438362.2:c.1126C>T	p.Arg376Ter	p.R376*	ENST00000438362	NM_001242891.1	376	Cga/Tga																																																																															
CDC73	79577	MSKCC	GRCh37	1	193107231	193107231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	51	247	0	ENST00000367435.3:c.440G>A	p.Arg147His	p.R147H	ENST00000367435	NM_024529.4	147	cGc/cAc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246091265	246091265	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777672375		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	203	538	0	ENST00000388985.4:c.670C>T	p.Arg224Ter	p.R224*	ENST00000388985		224	Cga/Tga																																																																															
TET1	80312	MSKCC	GRCh37	10	70412322	70412322	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	100	317	0	ENST00000373644.4:c.4432A>G	p.Ser1478Gly	p.S1478G	ENST00000373644	NM_030625.2	1478	Agc/Ggc																																																																															
TET1	80312	MSKCC	GRCh37	10	70426854	70426854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1288019869		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	140	370	0	ENST00000373644.4:c.4514G>A	p.Arg1505His	p.R1505H	ENST00000373644	NM_030625.2	1505	cGt/cAt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88651979	88651979	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	82	337	0	ENST00000372037.3:c.326A>G	p.Gln109Arg	p.Q109R	ENST00000372037	NM_004329.2	109	cAg/cGg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683228	88683228	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876658515		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	165	501	0	ENST00000372037.3:c.1438C>T	p.Arg480Trp	p.R480W	ENST00000372037	NM_004329.2	480	Cgg/Tgg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720712	89720712	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	41	123	0	ENST00000371953.3:c.867del	p.Val290Ter	p.V290*	ENST00000371953	NM_000314.4	288	gAa/ga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	90	308	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123263395	123263395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs536181987		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	157	430	1	ENST00000358487.5:c.1348C>T	p.Arg450Cys	p.R450C	ENST00000358487	NM_000141.4	450	Cgc/Tgc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742951	17742951	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1332082680		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	227	793	0	ENST00000250003.3:c.859G>A	p.Ala287Thr	p.A287T	ENST00000250003	NM_002478.4	287	Gcc/Acc																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518449	69518449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs912723093		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	127	302	0	ENST00000294312.3:c.196G>A	p.Gly66Ser	p.G66S	ENST00000294312	NM_005117.2	66	Ggc/Agc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941273	71941273	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753375974		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	268	833	0	ENST00000298229.2:c.1048C>T	p.Arg350Trp	p.R350W	ENST00000298229	NM_001567.3	350	Cgg/Tgg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946486	71946486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	174	633	1	ENST00000298229.2:c.2650C>T	p.Arg884Trp	p.R884W	ENST00000298229	NM_001567.3	884	Cgg/Tgg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948208	71948209	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs749079348		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	273	1002	5	ENST00000298229.2:c.2927dup	p.Pro977ThrfsTer7	p.P977Tfs*7	ENST00000298229	NM_001567.3	974	gcc/gCcc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	420215	420215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	99	357	0	ENST00000399788.2:c.3052G>A	p.Ala1018Thr	p.A1018T	ENST00000399788	NM_001042603.1	1018	Gct/Act																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18491390	18491390	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1377942847		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	94	272	0	ENST00000266497.5:c.1309del	p.Ile437TyrfsTer5	p.I437Yfs*5	ENST00000266497		435	Aaa/aa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	105	471	2	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446755	49446755	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs564617479		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	190	624	1	ENST00000301067.7:c.1055C>T	p.Ala352Val	p.A352V	ENST00000301067	NM_003482.3	352	gCc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447841	49447841	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748834953		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	220	668	0	ENST00000301067.7:c.593C>T	p.Ala198Val	p.A198V	ENST00000301067	NM_003482.3	198	gCg/gTg																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50482355	50482355	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	197	492	1	ENST00000394963.4:c.711del	p.Phe237LeufsTer5	p.F237Lfs*5	ENST00000394963	NM_003076.4	236	Ttt/tt																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233624	69233624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	12	188	0	ENST00000462284.1:c.1489C>T	p.Pro497Ser	p.P497S	ENST00000462284	NM_002392.5	497	Ccc/Tcc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885145	111885145	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	214	621	0	ENST00000341259.2:c.1038del	p.Leu347CysfsTer26	p.L347Cfs*26	ENST00000341259	NM_005475.2	345	Ggg/gg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	212	693	9	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
POLE	5426	MSKCC	GRCh37	12	133238261	133238261	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs935816567		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	116	428	0	ENST00000320574.5:c.2716A>G	p.Thr906Ala	p.T906A	ENST00000320574	NM_006231.2	906	Acc/Gcc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26975423	26975423	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	143	404	0	ENST00000381527.3:c.1049A>G	p.Gln350Arg	p.Q350R	ENST00000381527	NM_001260.1	350	cAa/cGa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907420	32907421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1253401667		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	75	261	2	ENST00000380152.3:c.1813dup	p.Ile605AsnfsTer11	p.I605Nfs*11	ENST00000380152		602	gga/ggAa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103519045	103519045	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751772171		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	175	462	0	ENST00000355739.4:c.2383G>A	p.Ala795Thr	p.A795T	ENST00000355739	NM_000123.3	795	Gcc/Acc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81534643	81534645	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	118	377	1	ENST00000298171.2:c.290_292del	p.Phe97del	p.F97del	ENST00000298171	NM_000369.2	96	tcCTTc/tcc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95566220	95566220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767112987		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	177	538	1	ENST00000343455.3:c.4103G>A	p.Arg1368His	p.R1368H	ENST00000343455	NM_177438.2	1368	cGc/cAc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643438	38643438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	180	537	0	ENST00000299084.4:c.908G>T	p.Ser303Ile	p.S303I	ENST00000299084	NM_152594.2	303	aGt/aTt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347139	347139	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	287	924	1	ENST00000262320.3:c.1872G>T	p.Glu624Asp	p.E624D	ENST00000262320	NM_003502.3	624	gaG/gaT																																																																															
TSC2	7249	MSKCC	GRCh37	16	2106687	2106687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	258	839	0	ENST00000219476.3:c.691C>A	p.Leu231Met	p.L231M	ENST00000219476	NM_000548.3	231	Ctg/Atg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2126130	2126130	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs796053512		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	259	742	0	ENST00000219476.3:c.2701C>T	p.Arg901Cys	p.R901C	ENST00000219476	NM_000548.3	901	Cgc/Tgc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222500	2222500	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766165474		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	284	941	0	ENST00000326181.6:c.694C>T	p.Arg232Trp	p.R232W	ENST00000326181	NM_032271.2	232	Cgg/Tgg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647028	23647028	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	210	731	1	ENST00000261584.4:c.839del	p.Asn280ThrfsTer8	p.N280Tfs*8	ENST00000261584	NM_024675.3	280	aAc/ac																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	142	543	1	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821707	72821707	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	100	349	0	ENST00000268489.5:c.10468T>G	p.Phe3490Val	p.F3490V	ENST00000268489	NM_006885.3	3490	Ttc/Gtc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357120	89357120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	235	704	0	ENST00000301030.4:c.514C>A	p.Leu172Met	p.L172M	ENST00000301030	NM_001256183.1	172	Ctg/Atg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89831344	89831345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	167	594	0	ENST00000389301.3:c.2730_2731dup	p.Trp911SerfsTer11	p.W911Sfs*11	ENST00000389301	NM_000135.2	911	tgg/tCTgg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7990757	7990757	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs925216708		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	154	430	0	ENST00000319144.4:c.4G>A	p.Ala2Thr	p.A2T	ENST00000319144	NM_001139.2	2	Gcc/Acc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961810	15961810	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	131	431	0	ENST00000268712.3:c.5985G>T	p.Glu1995Asp	p.E1995D	ENST00000268712	NM_006311.3	1995	gaG/gaT																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619372	37619372	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	98	353	0	ENST00000447079.4:c.1046+2T>C		p.X349_splice	ENST00000447079	NM_015083.1	349																																																																																
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	194	772	10	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	418	746	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437608	56437608	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	178	512	0	ENST00000407977.2:c.854T>C	p.Leu285Pro	p.L285P	ENST00000407977		285	cTa/cCa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740836	58740836	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs747668756		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	203	487	0	ENST00000305921.3:c.1741C>T	p.Arg581Ter	p.R581*	ENST00000305921	NM_003620.3	581	Cga/Tga																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372069	45372069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	182	502	0	ENST00000262160.6:c.1100G>A	p.Gly367Asp	p.G367D	ENST00000262160	NM_005901.5	367	gGc/gAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575057	48575057	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	86	274	0	ENST00000342988.3:c.251T>C	p.Val84Ala	p.V84A	ENST00000342988	NM_005359.5	84	gTg/gCg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222730	5222731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs766222935		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	175	758	1	ENST00000357368.4:c.3072dup	p.Val1025ArgfsTer34	p.V1025Rfs*34	ENST00000357368	NM_002850.3	1024	-/C																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274304	5274304	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	219	753	0	ENST00000357368.4:c.143del	p.Gly48ValfsTer17	p.G48Vfs*17	ENST00000357368	NM_002850.3	48	gGt/gt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291083	10291084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755889652		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	226	755	6	ENST00000340748.4:c.387dup	p.Lys130GlnfsTer19	p.K130Qfs*19	ENST00000340748		129	-/C																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266930	18266930	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755171275		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	212	505	1	ENST00000222254.8:c.241G>A	p.Val81Met	p.V81M	ENST00000222254	NM_005027.3	81	Gtg/Atg																																																																															
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	253	840	2	ENST00000575354.2:c.3743del	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																															
POLD1	5424	MSKCC	GRCh37	19	50917060	50917060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139235742		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	303	878	1	ENST00000440232.2:c.2312C>T	p.Ala771Val	p.A771V	ENST00000440232	NM_002691.3	771	gCg/gTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919743	50919743	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs897259743		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	254	860	2	ENST00000440232.2:c.2911G>A	p.Glu971Lys	p.E971K	ENST00000440232	NM_002691.3	971	Gag/Aag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966872	25966873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	40	562	4	ENST00000435504.4:c.2333dup	p.Val779SerfsTer25	p.V779Sfs*25	ENST00000435504		778	cca/ccCa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	126	411	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033789	48033789	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs773763465		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	82	268	0	ENST00000234420.5:c.4000C>T	p.Arg1334Trp	p.R1334W	ENST00000234420	NM_000179.2	1334	Cgg/Tgg																																																																															
CASP8	841	MSKCC	GRCh37	2	202131211	202131211	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	101	349	0	ENST00000358485.4:c.179T>C	p.Met60Thr	p.M60T	ENST00000358485	NM_001080125.1	60	aTg/aCg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794881	242794881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs190602950		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	277	783	0	ENST00000334409.5:c.328G>A	p.Val110Met	p.V110M	ENST00000334409	NM_005018.2	110	Gtg/Atg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384650	31384651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756395138		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	225	653	2	ENST00000328111.2:c.1359dup	p.Leu454AlafsTer11	p.L454Afs*11	ENST00000328111	NM_006892.3	451	gag/gaGg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	121	340	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
SETD2	29072	MSKCC	GRCh37	3	47139521	47139521	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	130	335	0	ENST00000409792.3:c.5066T>C	p.Leu1689Pro	p.L1689P	ENST00000409792	NM_014159.6	1689	cTg/cCg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163933	47163933	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	97	286	0	ENST00000409792.3:c.2193C>A	p.Asp731Glu	p.D731E	ENST00000409792	NM_014159.6	731	gaC/gaA																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436395	52436395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	244	758	0	ENST00000460680.1:c.2099G>A	p.Arg700Gln	p.R700Q	ENST00000460680	NM_004656.3	700	cGg/cAg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71090656	71090656	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs202064883		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	85	256	0	ENST00000318789.4:c.692T>C	p.Leu231Pro	p.L231P	ENST00000318789	NM_032682.5	231	cTc/cCc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138400844	138400844	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	146	511	0	ENST00000289153.2:c.2469G>T	p.Met823Ile	p.M823I	ENST00000289153	NM_006219.2	823	atG/atT																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664546	138664546	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757937453		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	131	239	0	ENST00000330315.3:c.1019C>T	p.Ala340Val	p.A340V	ENST00000330315	NM_023067.3	340	gCg/gTg																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149375074	149375074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	210	910	0	ENST00000360632.3:c.20C>G	p.Pro7Arg	p.P7R	ENST00000360632	NM_015472.4	7	cCc/cGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519942		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	62	298	0	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155367	185155367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs902931460		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	149	450	1	ENST00000265026.3:c.608C>T	p.Thr203Met	p.T203M	ENST00000265026	NM_004721.4	203	aCg/aTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217231	66217231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	112	389	2	ENST00000273854.3:c.2384G>A	p.Gly795Asp	p.G795D	ENST00000273854	NM_004439.5	795	gGc/gAc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	275	551	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
IRF4	3662	MSKCC	GRCh37	6	397112	397112	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	104	320	0	ENST00000380956.4:c.497T>C	p.Val166Ala	p.V166A	ENST00000380956	NM_001195286.1	166	gTt/gCt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324157	31324157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	184	317	0	ENST00000412585.2:c.406G>A	p.Gly136Arg	p.G136R	ENST00000412585	NM_005514.6	136	Ggg/Agg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188832	32188832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	230	760	1	ENST00000375023.3:c.722G>T	p.Arg241Met	p.R241M	ENST00000375023	NM_004557.3	241	aGg/aTg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815865	32815865	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	167	637	0	ENST00000354258.4:c.1751T>C	p.Leu584Pro	p.L584P	ENST00000354258	NM_000593.5	584	cTg/cCg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818296	32818296	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	148	535	0	ENST00000354258.4:c.1231-2A>G		p.X411_splice	ENST00000354258	NM_000593.5	411																																																																																
PIM1	5292	MSKCC	GRCh37	6	37139051	37139051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	202	625	0	ENST00000373509.5:c.391G>A	p.Asp131Asn	p.D131N	ENST00000373509	NM_002648.3	131	Gac/Aac																																																																															
CCND3	896	MSKCC	GRCh37	6	41905033	41905033	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	159	508	0	ENST00000372991.4:c.514C>A	p.Arg172Ser	p.R172S	ENST00000372991	NM_001760.3	172	Cgt/Agt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979309	93979309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	103	381	0	ENST00000369303.4:c.1519C>T	p.Pro507Ser	p.P507S	ENST00000369303	NM_004440.3	507	Cca/Tca																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519505	137519506	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs780346130		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	86	315	2	ENST00000367739.4:c.1132_1133del	p.Ser378PhefsTer6	p.S378Ffs*6	ENST00000367739	NM_000416.2	378	AGt/t																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137522040	137522041	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	75	175	0	ENST00000367739.4:c.838dup	p.Ser280LysfsTer22	p.S280Kfs*22	ENST00000367739	NM_000416.2	280	agc/aAgc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528284	157528284	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs749055122		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	245	735	0	ENST00000346085.5:c.6013del	p.Val2005TrpfsTer16	p.V2005Wfs*16	ENST00000346085	NM_020732.3	2003	aaG/aa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968322	2968323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762770988		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	197	753	1	ENST00000396946.4:c.1663dup	p.Arg555ProfsTer38	p.R555Pfs*38	ENST00000396946	NM_032415.4	555	cgg/cCgg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026929	6026929	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	15	17	0	ENST00000265849.7:c.1467G>T	p.Glu489Asp	p.E489D	ENST00000265849	NM_000535.5	489	gaG/gaT																																																																															
RAC1	5879	MSKCC	GRCh37	7	6441515	6441515	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769283316		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	94	267	0	ENST00000356142.4:c.362G>A	p.Arg121Gln	p.R121Q	ENST00000356142	NM_018890.3	121	cGg/cAg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	114	343	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345759	152345760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1064793327		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	77	255	0	ENST00000359321.1:c.810dup	p.Ile271TyrfsTer8	p.I271Yfs*8	ENST00000359321	NM_005431.1	270	-/T																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372066	55372066	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs748768438		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	214	622	0	ENST00000297316.4:c.756C>A	p.Ser252Arg	p.S252R	ENST00000297316	NM_022454.3	252	agC/agA																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978495	70978495	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	29	411	0	ENST00000276594.2:c.1158del	p.Lys387SerfsTer90	p.K387Sfs*90	ENST00000276594	NM_024504.3	386	ggG/gg																																																																															
NBN	4683	MSKCC	GRCh37	8	90958479	90958480	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs780235686		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	50	337	1	ENST00000265433.3:c.1958dup	p.Leu654AlafsTer5	p.L654Afs*5	ENST00000265433	NM_002485.4	653	aag/aaAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400023	139400023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	278	842	0	ENST00000277541.6:c.4325del	p.Pro1442ArgfsTer3	p.P1442Rfs*3	ENST00000277541	NM_017617.3	1442	cCg/cg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139794916	139794916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267602174		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	181	557	0	ENST00000247668.2:c.310C>T	p.Pro104Ser	p.P104S	ENST00000247668	NM_021138.3	104	Ccg/Tcg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44941830	44941831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	116	288	0	ENST00000377967.4:c.3160dup	p.Arg1054LysfsTer5	p.R1054Kfs*5	ENST00000377967	NM_021140.2	1052	gaa/gAaa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222366	53222366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	236	919	0	ENST00000375401.3:c.4466C>T	p.Ala1489Val	p.A1489V	ENST00000375401	NM_004187.3	1489	gCt/gTt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223419	53223419	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370060257		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	304	864	0	ENST00000375401.3:c.3940C>T	p.Arg1314Trp	p.R1314W	ENST00000375401	NM_004187.3	1314	Cgg/Tgg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	141	672	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
AR	367	MSKCC	GRCh37	X	66766496	66766496	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	223	676	1	ENST00000374690.3:c.1508G>T	p.Trp503Leu	p.W503L	ENST00000374690	NM_000044.3	503	tGg/tTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70341463	70341463	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	218	671	0	ENST00000374080.3:c.898T>G	p.Phe300Val	p.F300V	ENST00000374080		300	Ttc/Gtc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993830	72993831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	116	542	1	ENST00000268489.5:c.214_215insG	p.Ser72CysfsTer47	p.S72Cfs*47	ENST00000268489	NM_006885.3	72	tcc/tGcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0041027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	258	423	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008300	29008300	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	172	237	0	ENST00000282397.4:c.571G>T	p.Gly191Cys	p.G191C	ENST00000282397	NM_002019.4	191	Ggc/Tgc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436002	56436002	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1366537134		P-0041027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	693	379	0	ENST00000407977.2:c.1135C>T	p.Gln379Ter	p.Q379*	ENST00000407977		379	Cag/Tag																																																																															
BAP1	8314	MSKCC	GRCh37	3	52438494	52438494	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756443059		P-0041027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	329	500	2	ENST00000460680.1:c.1225G>A	p.Val409Met	p.V409M	ENST00000460680	NM_004656.3	409	Gtg/Atg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259996	16260007	+	frameshift_variant	Frame_Shift_Del	DEL	ACTCCAACCAAA	ACTCCAACCAAA	GG			P-0041027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	299	564	1	ENST00000375759.3:c.7261_7272delinsGG	p.Thr2421GlyfsTer36	p.T2421Gfs*36	ENST00000375759	NM_015001.2	2421	ACTCCAACCAAA/GG																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867496	45867496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	417	711	0	ENST00000391945.4:c.812T>C	p.Leu271Pro	p.L271P	ENST00000391945	NM_000400.3	271	cTc/cCc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860692	151860692	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs772605130		P-0041027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	251	369	0	ENST00000262189.6:c.9970A>G	p.Thr3324Ala	p.T3324A	ENST00000262189	NM_170606.2	3324	Act/Gct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	212	515	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0041151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	92	388	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0041151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	89	427	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0041151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	329	1060	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	498	1038	2	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115903	8115904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0041171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	112	514	0	ENST00000346208.3:c.1251dup	p.Thr418HisfsTer89	p.T418Hfs*89	ENST00000346208		417	acc/aCcc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257131	16257131	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	100	569	1	ENST00000375759.3:c.4396G>T	p.Asp1466Tyr	p.D1466Y	ENST00000375759	NM_015001.2	1466	Gat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0041183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	22	206	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	54	383	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0041183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	32	444	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660548		P-0041183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	112	689	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112174466	112174466	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	51	289	0	ENST00000257430.4:c.3175G>T	p.Glu1059Ter	p.E1059*	ENST00000257430	NM_000038.5	1059	Gaa/Taa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119114	70119114	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0041183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	68	385	0	ENST00000245479.2:c.685+1G>A		p.X229_splice	ENST00000245479	NM_000346.3	229																																																																																
TGFBR2	7048	MSKCC	GRCh37	3	30713411	30713412	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	83	550	1	ENST00000359013.4:c.812dup	p.Asp272GlyfsTer11	p.D272Gfs*11	ENST00000359013	NM_001024847.2	271	ctg/cTtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0041198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	254	853	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711879	89711879	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	134	422	0	ENST00000371953.3:c.497T>A	p.Val166Glu	p.V166E	ENST00000371953	NM_000314.4	166	gTa/gAa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73347911	73347911	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146500302		P-0041198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	218	335	0	ENST00000377767.4:c.1150C>T	p.Arg384Cys	p.R384C	ENST00000377767	NM_014953.3	384	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097641	27097642	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	211	632	0	ENST00000324856.7:c.3232dup	p.Thr1078AsnfsTer27	p.T1078Nfs*27	ENST00000324856	NM_006015.4	1077	gca/gcAa																																																																															
APC	324	MSKCC	GRCh37	5	112174223	112174223	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	121	441	0	ENST00000257430.4:c.2932C>T	p.Gln978Ter	p.Q978*	ENST00000257430	NM_000038.5	978	Caa/Taa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3656682	3656682	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201769293		P-0041198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	336	891	0	ENST00000294008.3:c.553G>A	p.Asp185Asn	p.D185N	ENST00000294008	NM_032444.2	185	Gac/Aac																																																																															
APC	324	MSKCC	GRCh37	5	112174664	112174664	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	121	438	0	ENST00000257430.4:c.3373del	p.Val1125Ter	p.V1125*	ENST00000257430	NM_000038.5	1125	Gta/ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0041292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	112	696	1	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	82	245	0	ENST00000257430.4:c.4199del	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118924	70118926	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0041292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	37	684	0	ENST00000245479.2:c.499_501del	p.Lys167del	p.K167del	ENST00000245479	NM_000346.3	166	AAG/-																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217680	7217681	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0041292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	52	367	0	ENST00000380728.2:c.246_247del	p.Lys83AlafsTer13	p.K83Afs*13	ENST00000380728		82	gaGAag/gaag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603138	48603138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	47	374	0	ENST00000342988.3:c.1439C>T	p.Pro480Leu	p.P480L	ENST00000342988	NM_005359.5	480	cCa/cTa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1625632	1625657	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAGGTCCCCTTCATGCCCGAAGGG	GGGAGGTCCCCTTCATGCCCGAAGGG	-			P-0041292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	55	797	0	ENST00000344749.5:c.417_442del	p.Pro140ValfsTer43	p.P140Vfs*43	ENST00000344749	NM_001136139.2	139	tcCCCTTCGGGCATGAAGGGGACCTCCCag/tcag																																																																															
BTK	695	MSKCC	GRCh37	X	100611135	100611135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	41	507	0	ENST00000308731.7:c.1471C>A	p.His491Asn	p.H491N	ENST00000308731	NM_000061.2	491	Cac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0041323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	43	239	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0041323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	57	445	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	81	227	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	77	286	0	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175720	112175720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	95	223	1	ENST00000257430.4:c.4429C>T	p.Gln1477Ter	p.Q1477*	ENST00000257430	NM_000038.5	1477	Cag/Tag																																																																															
SOS1	6654	MSKCC	GRCh37	2	39222435	39222435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	276	561	0	ENST00000402219.2:c.3175G>A	p.Glu1059Lys	p.E1059K	ENST00000402219	NM_005633.3	1059	Gag/Aag																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67590401	67590402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	57	114	0	ENST00000274335.5:c.1464dup	p.Glu489Ter	p.E489*	ENST00000274335		488	aat/aaTt																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821346	32821346	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	280	709	0	ENST00000354258.4:c.248T>A	p.Leu83Gln	p.L83Q	ENST00000354258	NM_000593.5	83	cTg/cAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76855029	76855029	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	9	341	0	ENST00000373344.5:c.5807A>G	p.Lys1936Arg	p.K1936R	ENST00000373344	NM_000489.3	1936	aAg/aGg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651289	52651289	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	75	372	1	ENST00000394830.3:c.1807G>T	p.Glu603Ter	p.E603*	ENST00000394830	NM_018313.4	603	Gag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108175507	108175507	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	50	362	0	ENST00000278616.4:c.5602G>T	p.Gly1868Ter	p.G1868*	ENST00000278616	NM_000051.3	1868	Gga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579396	7579397	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	205	730	0	ENST00000269305.4:c.290dup	p.Ser99PhefsTer50	p.S99Ffs*50	ENST00000269305	NM_001126112.2	97	gtc/gtTc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17125859	17125867	+	inframe_deletion	In_Frame_Del	DEL	TGTCAGCGA	TGTCAGCGA	-	rs1209487287		P-0041328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	134	626	0	ENST00000285071.4:c.727_735del	p.Leu244_Ser246del	p.L244_S246del	ENST00000285071	NM_144997.5	243	TCGCTGACA/-																																																																															
CDH1	999	MSKCC	GRCh37	16	68771285	68771331	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	GGCGCCTGCCCTCGCTCGGCGTCCCCGGCCAGCCATGGGCCCTTGGA	GGCGCCTGCCCTCGCTCGGCGTCCCCGGCCAGCCATGGGCCCTTGGA	-			P-0041389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	58	302	0	ENST00000261769.5:c.-33_14del		p.*11*	ENST00000261769	NM_004360.3																																																																																	
KMT2B	9757	MSKCC	GRCh37	19	36210790	36210790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	161	1004	0	ENST00000222270.7:c.541C>T	p.Arg181Trp	p.R181W	ENST00000222270	NM_014727.1	181	Cgg/Tgg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748092	41748092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	23	82	0	ENST00000226382.2:c.677C>T	p.Ala226Val	p.A226V	ENST00000226382	NM_003924.3	226	gCg/gTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589619	67589766	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGAATATGATAGATTATATGAAGAATATACCCGCACATCCCAGGTGAGTTTTCTATGAAAATCAGATTAAAAAATAAGAGTTCTAAACTTTTAAAGACTAACATGGAAAAAAGAATTTAAAAGGTTGAGTTTTTACGAATGAGGTGG	GAGAATATGATAGATTATATGAAGAATATACCCGCACATCCCAGGTGAGTTTTCTATGAAAATCAGATTAAAAAATAAGAGTTCTAAACTTTTAAAGACTAACATGGAAAAAAGAATTTAAAAGGTTGAGTTTTTACGAATGAGGTGG	-			P-0041389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	26	278	0	ENST00000274335.5:c.1383_1425+105del		p.X461_splice	ENST00000274335		461																																																																																
PTEN	5728	MSKCC	GRCh37	10	89693006	89693009	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	AAGG	AAGG	-			P-0041432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	131	339	0	ENST00000371953.3:c.490_492+1del		p.X164_splice	ENST00000371953	NM_000314.4	164																																																																																
FLT1	2321	MSKCC	GRCh37	13	29001416	29001416	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	750	374	1	ENST00000282397.4:c.1316C>A	p.Pro439Gln	p.P439Q	ENST00000282397	NM_002019.4	439	cCa/cAa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061129	38061130	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0041432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	216	319	0	ENST00000250448.2:c.859_860del	p.Ala287GlnfsTer5	p.A287Qfs*5	ENST00000250448	NM_004496.3	287	GCc/c																																																																															
ALK	238	MSKCC	GRCh37	2	29498066	29498066	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	225	652	0	ENST00000389048.3:c.1940A>G	p.Asn647Ser	p.N647S	ENST00000389048	NM_004304.4	647	aAt/aGt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38975650	38975650	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1333272721		P-0041432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	431	544	0	ENST00000357387.3:c.878G>A	p.Arg293Gln	p.R293Q	ENST00000357387	NM_152756.3	293	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578502	7578502	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	89	719	0	ENST00000269305.4:c.428T>G	p.Val143Gly	p.V143G	ENST00000269305	NM_001126112.2	143	gTg/gGg																																																																															
KDR	3791	MSKCC	GRCh37	4	55953855	55953855	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	38	443	0	ENST00000263923.4:c.3581T>C	p.Leu1194Pro	p.L1194P	ENST00000263923	NM_002253.2	1194	cTg/cCg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410930	63410935	+	inframe_deletion	In_Frame_Del	DEL	GGGTAG	GGGTAG	-			P-0041466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	47	633	0	ENST00000330258.3:c.2232_2237del	p.Tyr745_Pro746del	p.Y745_P746del	ENST00000330258	NM_152424.3	744	gcCTACCCt/gct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	88	531	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157150496	157150496	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs17318151		P-0041476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	95	638	0	ENST00000346085.5:c.1678A>G	p.Ile560Val	p.I560V	ENST00000346085	NM_020732.3	560	Att/Gtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs967461896		P-0041476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	118	733	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0041584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	16	255	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950726	38950726	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370517295		P-0041584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	39	219	0	ENST00000357387.3:c.3224G>A	p.Arg1075Gln	p.R1075Q	ENST00000357387	NM_152756.3	1075	cGa/cAa																																																																															
ACVR1	90	MSKCC	GRCh37	2	158636999	158636999	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772534199		P-0041584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	308	451	0	ENST00000263640.3:c.181G>A	p.Asp61Asn	p.D61N	ENST00000263640	NM_001105.4	61	Gat/Aat																																																																															
WT1	7490	MSKCC	GRCh37	11	32456254	32456254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756414084		P-0041584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	373	505	1	ENST00000332351.3:c.638G>A	p.Arg213His	p.R213H	ENST00000332351	NM_024426.4	213	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0041584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	438	602	1	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42843797	42843798	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0041584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	295	417	0	ENST00000398585.3:c.1121_1122del	p.Tyr374Ter	p.Y374*	ENST00000398585	NM_001135099.1	374	tAT/t																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021727	71021727	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	172	292	0	ENST00000318789.4:c.1631G>T	p.Arg544Leu	p.R544L	ENST00000318789	NM_032682.5	544	cGa/cTa																																																																															
APC	324	MSKCC	GRCh37	5	112174786	112174787	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0041620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	59	233	0	ENST00000257430.4:c.3498_3499del	p.Tyr1166Ter	p.Y1166*	ENST00000257430	NM_000038.5	1165	aaATat/aaat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579344	7579345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0041620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	539	738	0	ENST00000269305.4:c.342dup	p.His115AlafsTer34	p.H115Afs*34	ENST00000269305	NM_001126112.2	114	-/G																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117878	70117888	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCAGGCGGC	GCGCAGGCGGC	-			P-0041620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	82	493	0	ENST00000245479.2:c.353_363del	p.Ala118GlufsTer130	p.A118Efs*130	ENST00000245479	NM_000346.3	116	GCGCAGGCGGCg/g																																																																															
MED12	9968	MSKCC	GRCh37	X	70344220	70344220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	118	309	0	ENST00000374080.3:c.1956C>A	p.Ser652Arg	p.S652R	ENST00000374080		652	agC/agA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	35	454	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579838	7579839	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	AA			P-0041849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	59	725	0	ENST00000269305.4:c.74_74+1insTT	p.Leu26TyrfsTer19	p.L26Yfs*19	ENST00000269305	NM_001126112.2	25	cta/ctTTa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144678	55144678	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375434317		P-0041849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	38	373	0	ENST00000257290.5:c.2152C>T	p.Arg718Trp	p.R718W	ENST00000257290	NM_006206.4	718	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240695	55240695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764359156		P-0041902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	60	965	1	ENST00000275493.2:c.1939G>A	p.Ala647Thr	p.A647T	ENST00000275493	NM_005228.3	647	Gcc/Acc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115943	8115982	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGACCACACCACCCCTCCAGCATGGTCACCGCCATGGG	TTGGACCACACCACCCCTCCAGCATGGTCACCGCCATGGG	-			P-0041902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	179	498	0	ENST00000346208.3:c.1291_1330del	p.Gly431ArgfsTer31	p.G431Rfs*31	ENST00000346208		430	tTTGGACCACACCACCCCTCCAGCATGGTCACCGCCATGGGt/tt																																																																															
MET	4233	MSKCC	GRCh37	7	116435978	116435978	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587778444		P-0041902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	78	704	0	ENST00000397752.3:c.3973G>A	p.Glu1325Lys	p.E1325K	ENST00000397752	NM_000245.2	1325	Gaa/Aaa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0041903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	26	426	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0041903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	32	639	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0041903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	19	505	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746002	162746002	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1056323839		P-0041903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	28	433	1	ENST00000367921.3:c.2125C>T	p.Arg709Ter	p.R709*	ENST00000367921	NM_006182.2	709	Cga/Tga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0041903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	29	425	0	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46727002	46727002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1363172157		P-0041903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	41	581	2	ENST00000371975.4:c.836G>A	p.Arg279His	p.R279H	ENST00000371975	NM_003579.3	279	cGc/cAc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0041966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	175	462	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112175437	112175438	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	134	255	0	ENST00000257430.4:c.4147dup	p.Met1383AsnfsTer3	p.M1383Nfs*3	ENST00000257430	NM_000038.5	1382	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7578278	7578293	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGGGGCCAGACCTAA	GAGGGGCCAGACCTAA	-			P-0041966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	185	642	0	ENST00000269305.4:c.560-4_571del		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212578283	212578283	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1162491783		P-0041966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	93	413	0	ENST00000342788.4:c.974C>T	p.Pro325Leu	p.P325L	ENST00000342788	NM_005235.2	325	cCt/cTt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180036903	180036903	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0041966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	71	599	0	ENST00000261937.6:c.3807+2T>C		p.X1269_splice	ENST00000261937	NM_182925.4	1269																																																																																
FGFR2	2263	MSKCC	GRCh37	10	123274794	123274794	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913478		P-0041971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	145	506	0	ENST00000358487.5:c.1124A>G	p.Tyr375Cys	p.Y375C	ENST00000358487	NM_000141.4	375	tAc/tGc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274786	123274786	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	157	509	0	ENST00000358487.5:c.1132A>G	p.Ile378Val	p.I378V	ENST00000358487	NM_000141.4	378	Ata/Gta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0041972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	122	481	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																															
CASP8	841	MSKCC	GRCh37	2	202131411	202131411	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs777784105		P-0041972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	57	383	1	ENST00000358485.4:c.379C>T	p.Arg127Ter	p.R127*	ENST00000358485	NM_001080125.1	127	Cga/Tga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138445	2138445	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0041972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	79	632	1	ENST00000219476.3:c.5260-2A>G		p.X1754_splice	ENST00000219476	NM_000548.3	1754																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153271273	153271274	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATC			P-0041972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	29	141	0	ENST00000281708.4:c.502-1_504dup	p.Lys169AspfsTer10	p.K169Dfs*10	ENST00000281708	NM_033632.3	168	-/GATG																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138201244	138201244	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs543704449		P-0041972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	57	383	0	ENST00000237289.4:c.1943C>T	p.Ala648Val	p.A648V	ENST00000237289	NM_001270507.1	648	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0042001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	476	703	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0042001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	142	368	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	105	321	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591902	48591902	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519740		P-0042001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	143	486	0	ENST00000342988.3:c.1065C>A	p.Asp355Glu	p.D355E	ENST00000342988	NM_005359.5	355	gaC/gaA																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920402	114920402	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	227	470	0	ENST00000543371.1:c.1345del	p.Ala449HisfsTer42	p.A449Hfs*42	ENST00000543371	NM_001198531.1	448	cGg/cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0042011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	41	462	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640478	3640478	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373091194		P-0042011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	110	835	0	ENST00000294008.3:c.3161C>T	p.Ser1054Leu	p.S1054L	ENST00000294008	NM_032444.2	1054	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577515	7577520	+	inframe_deletion	In_Frame_Del	DEL	TGATGA	TGATGA	-			P-0042011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	86	668	0	ENST00000269305.4:c.761_766del	p.Ile254_Ile255del	p.I254_I255del	ENST00000269305	NM_001126112.2	254	aTCATCAca/aca																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806234	1806234	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781361431		P-0042011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	67	694	1	ENST00000260795.2:c.1253C>T	p.Pro418Leu	p.P418L	ENST00000260795		418	cCg/cTg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459448	50459448	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs761227924		P-0042011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	71	302	0	ENST00000331340.3:c.737A>G	p.His246Arg	p.H246R	ENST00000331340	NM_006060.4	246	cAc/cGc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123191763	123191763	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	36	476	0	ENST00000218089.9:c.1352G>T	p.Arg451Ile	p.R451I	ENST00000218089	NM_001042749.1	451	aGa/aTa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0042035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	66	445	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137852581		P-0042035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	385	217	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792820	33792820	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	34	247	0	ENST00000498907.2:c.501G>C	p.Glu167Asp	p.E167D	ENST00000498907	NM_004364.3	167	gaG/gaC																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845382	42845382	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs770521585		P-0042035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	118	804	0	ENST00000398585.3:c.880G>C	p.Val294Leu	p.V294L	ENST00000398585	NM_001135099.1	294	Gtg/Ctg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060962	38060979	+	frameshift_variant	Frame_Shift_Del	DEL	TCGCCGTCGCCCCACTGT	TCGCCGTCGCCCCACTGT	GGCCA			P-0042035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	70	545	2	ENST00000250448.2:c.1010_1027delinsTGGCC	p.His337LeufsTer9	p.H337Lfs*9	ENST00000250448	NM_004496.3	337	cACAGTGGGGCGACGGCGAca/cTGGCCca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0042064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	569	939	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0042064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	200	577	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680751	88680751	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201252722		P-0042064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	214	815	0	ENST00000360948.2:c.506G>A	p.Arg169His	p.R169H	ENST00000360948	NM_001012338.2	169	cGc/cAc																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439887	51439887	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	39	426	0	ENST00000262662.1:c.452A>C	p.Glu151Ala	p.E151A	ENST00000262662		151	gAg/gCg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729345	41729345	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs771243659		P-0042064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	64	702	0	ENST00000242208.4:c.1184A>G	p.Lys395Arg	p.K395R	ENST00000242208	NM_002192.2	395	aAg/aGg																																																																															
MYC	4609	MSKCC	GRCh37	8	128753200	128753200	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	33	423	0	ENST00000377970.2:c.1361C>G	p.Ala454Gly	p.A454G	ENST00000377970	NM_002467.4	454	gCg/gGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577501	7577501	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-	rs1427471466		P-0042160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	93	692	0	ENST00000269305.4:c.780del	p.Ser261ValfsTer84	p.S261Vfs*84	ENST00000269305	NM_001126112.2	260	tcC/tc																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	217	644	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs760043106		P-0042169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	156	579	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68939456	68939456	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0042169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	32	286	0	ENST00000288368.4:c.442-1G>T		p.X148_splice	ENST00000288368	NM_024870.2	148																																																																																
PIK3R3	8503	MSKCC	GRCh37	1	46532688	46532688	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	108	497	0	ENST00000262741.5:c.390T>G	p.Phe130Leu	p.F130L	ENST00000262741	NM_003629.3	130	ttT/ttG																																																																															
KDR	3791	MSKCC	GRCh37	4	55984776	55984776	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	146	501	0	ENST00000263923.4:c.353T>C	p.Val118Ala	p.V118A	ENST00000263923	NM_002253.2	118	gTt/gCt																																																																															
AR	367	MSKCC	GRCh37	X	66766505	66766505	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1403123525		P-0042174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	181	327	0	ENST00000374690.3:c.1517G>A	p.Gly506Asp	p.G506D	ENST00000374690	NM_000044.3	506	gGc/gAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0042223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	75	413	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	42	266	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356134	66356134	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756357402		P-0042223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	80	510	1	ENST00000273854.3:c.1363C>T	p.Arg455Trp	p.R455W	ENST00000273854	NM_004439.5	455	Cgg/Tgg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953041	2953041	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149857605		P-0042223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	154	886	0	ENST00000396946.4:c.2899C>T	p.Arg967Cys	p.R967C	ENST00000396946	NM_032415.4	967	Cgc/Tgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720803	89720804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0042223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	36	281	0	ENST00000371953.3:c.955_956dup	p.Thr321Ter	p.T321*	ENST00000371953	NM_000314.4	318	-/AC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584817	48584826	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GGACATTACT	GGACATTACT	-			P-0042223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	66	347	0	ENST00000342988.3:c.896_904+1del		p.GHYW299fs	ENST00000342988	NM_005359.5	299	GGACATTACTgg/gg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204878	128204878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	155	971	2	ENST00000341105.2:c.563C>T	p.Thr188Met	p.T188M	ENST00000341105	NM_032638.4	188	aCg/aTg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965706	93965706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	58	369	0	ENST00000369303.4:c.2222G>T	p.Gly741Val	p.G741V	ENST00000369303	NM_004440.3	741	gGa/gTa																																																																															
ABL1	25	MSKCC	GRCh37	9	133759865	133759865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	107	846	0	ENST00000318560.5:c.2188G>A	p.Glu730Lys	p.E730K	ENST00000318560	NM_005157.4	730	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786202962		P-0042247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	201	445	1	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575232	48575232	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0042247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	97	152	0	ENST00000342988.3:c.424+2T>A		p.X142_splice	ENST00000342988	NM_005359.5	142																																																																																
PPP2R1A	5518	MSKCC	GRCh37	19	52719818	52719818	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	174	377	0	ENST00000322088.6:c.1030G>T	p.Ala344Ser	p.A344S	ENST00000322088	NM_014225.5	344	Gcc/Tcc																																																																															
APC	324	MSKCC	GRCh37	5	112175191	112175193	+	frameshift_variant	Frame_Shift_Del	DEL	TAC	TAC	AG			P-0042247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	43	83	0	ENST00000257430.4:c.3900_3902delinsAG	p.Asn1300LysfsTer5	p.N1300Kfs*5	ENST00000257430	NM_000038.5	1300	aaTACc/aaAGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916947	178916947	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	52	337	0	ENST00000263967.3:c.334A>T	p.Ile112Phe	p.I112F	ENST00000263967	NM_006218.2	112	Atc/Ttc																																																																															
CDH1	999	MSKCC	GRCh37	16	68846040	68846040	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0042272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	76	534	0	ENST00000261769.5:c.1013del	p.Phe338SerfsTer18	p.F338Sfs*18	ENST00000261769	NM_004360.3	337	agT/ag																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164805	36164833	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGAGTAGGTGAAGGCGCCTGGATAGTG	GGGGAGTAGGTGAAGGCGCCTGGATAGTG	T			P-0042272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	93	747	0	ENST00000300305.3:c.1042_1070delinsA	p.His348ArgfsTer237	p.H348Rfs*237	ENST00000300305		348	CACTATCCAGGCGCCTTCACCTACTCCCCg/Ag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0042338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	159	374	3	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572234	64572234	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	354	537	5	ENST00000337652.1:c.1420G>T	p.Glu474Ter	p.E474*	ENST00000337652	NM_130803.2	474	Gag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630260	187630260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	253	499	8	ENST00000441802.2:c.722C>T	p.Ala241Val	p.A241V	ENST00000441802	NM_005245.3	241	gCc/gTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845229	151845229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	80	474	0	ENST00000262189.6:c.13783C>T	p.Arg4595Cys	p.R4595C	ENST00000262189	NM_170606.2	4595	Cgc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828850	72828884	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGAGCATGAAAGGCATATCCAGGGACCTGTCCA	AAAGAGCATGAAAGGCATATCCAGGGACCTGTCCA	-			P-0042378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	31	572	0	ENST00000268489.5:c.7697_7731del	p.Leu2566Ter	p.L2566*	ENST00000268489	NM_006885.3	2566	tTGGACAGGTCCCTGGATATGCCTTTCATGCTCTTT/t																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732957	30732957	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs727504421		P-0042378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	82	418	0	ENST00000359013.4:c.1645G>T	p.Asp549Tyr	p.D549Y	ENST00000359013	NM_001024847.2	549	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0042394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	363	846	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
CBL	867	MSKCC	GRCh37	11	119156076	119156076	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	378	712	0	ENST00000264033.4:c.1741G>C	p.Val581Leu	p.V581L	ENST00000264033	NM_005188.3	581	Gtc/Ctc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43699735	43699735	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137879443		P-0042475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	358	504	1	ENST00000382044.4:c.5780C>T	p.Thr1927Met	p.T1927M	ENST00000382044	NM_001141980.1	1927	aCg/aTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858944	57858944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	559	819	3	ENST00000228682.2:c.440C>T	p.Pro147Leu	p.P147L	ENST00000228682	NM_005269.2	147	cCt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	45	350	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748822	43748822	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	47	817	2	ENST00000382044.4:c.1984G>T	p.Glu662Ter	p.E662*	ENST00000382044	NM_001141980.1	662	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579405	7579405	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	44	775	0	ENST00000269305.4:c.282del	p.Ser95LeufsTer28	p.S95Lfs*28	ENST00000269305	NM_001126112.2	94	tcA/tc																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0042547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	65	212	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	102	393	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
IRF4	3662	MSKCC	GRCh37	6	394849	394849	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1377317453		P-0042547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	59	416	0	ENST00000380956.4:c.245G>A	p.Arg82Gln	p.R82Q	ENST00000380956	NM_001195286.1	82	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112174893	112174893	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs730881247		P-0042547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	19	223	0	ENST00000257430.4:c.3602C>A	p.Ser1201Ter	p.S1201*	ENST00000257430	NM_000038.5	1201	tCa/tAa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549381	21549381	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3091	637	531	0	ENST00000382592.4:c.2895T>A	p.Asp965Glu	p.D965E	ENST00000382592	NM_014572.2	965	gaT/gaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577150	7577151	+	inframe_insertion	In_Frame_Ins	INS	-	-	TACCAC			P-0042547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	164	558	0	ENST00000269305.4:c.783-1_787dup	p.Ser261_Gly262dup	p.S261_G262dup	ENST00000269305	NM_001126112.2	261	aat/aGTGGTAat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	264	724	0	ENST00000269305.4:c.470T>G	p.Val157Gly	p.V157G	ENST00000269305	NM_001126112.2	157	gTc/gGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433722	49433722	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs572359740		P-0042577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	40	827	1	ENST00000301067.7:c.7831C>T	p.Arg2611Cys	p.R2611C	ENST00000301067	NM_003482.3	2611	Cgc/Tgc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883114	37883114	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749454186		P-0042577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	202	821	1	ENST00000269571.5:c.3017G>A	p.Arg1006His	p.R1006H	ENST00000269571		1006	cGc/cAc																																																																															
EED	8726	MSKCC	GRCh37	11	85988163	85988163	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs759299377		P-0042577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	85	457	0	ENST00000263360.6:c.1108A>G	p.Met370Val	p.M370V	ENST00000263360	NM_003797.3	370	Atg/Gtg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5072612	5072613	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0042577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	28	430	0	ENST00000381652.3:c.1763_1764del	p.Arg588LysfsTer8	p.R588Kfs*8	ENST00000381652	NM_004972.3	588	AGa/a																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0042653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	100	417	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161803	56161807	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTT	AGGTT	-			P-0042653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	41	347	0	ENST00000399503.3:c.1301+1_1301+5del		p.X434_splice	ENST00000399503	NM_005921.1	434																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56178442	56178443	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	89	317	0	ENST00000399503.3:c.3416dup	p.Met1140TyrfsTer5	p.M1140Yfs*5	ENST00000399503	NM_005921.1	1139	tct/tCct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	127	403	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023266	27023278	+	frameshift_variant	Frame_Shift_Del	DEL	CGGTGGCGGCAGC	CGGTGGCGGCAGC	-			P-0042705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	37	112	0	ENST00000324856.7:c.372_384del	p.Gly125AlafsTer103	p.G125Afs*103	ENST00000324856	NM_006015.4	124	ggCGGTGGCGGCAGC/gg																																																																															
MGA	23269	MSKCC	GRCh37	15	42003335	42003357	+	frameshift_variant	Frame_Shift_Del	DEL	ACTTTGGATGAAAATATATTTCC	ACTTTGGATGAAAATATATTTCC	-			P-0042705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	108	485	0	ENST00000219905.7:c.2873_2895del	p.Thr958LysfsTer4	p.T958Kfs*4	ENST00000219905	NM_001164273.1	958	ACTTTGGATGAAAATATATTTCCa/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7577098	7577109	+	inframe_deletion	In_Frame_Del	DEL	TCTCCCAGGACA	TCTCCCAGGACA	-			P-0042705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	155	699	0	ENST00000269305.4:c.829_840del	p.Cys277_Arg280del	p.C277_R280del	ENST00000269305	NM_001126112.2	277	TGTCCTGGGAGA/-																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128047366	128047366	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	77	503	1	ENST00000285398.2:c.556C>A	p.Gln186Lys	p.Q186K	ENST00000285398	NM_000122.1	186	Cag/Aag																																																																															
PARP1	142	MSKCC	GRCh37	1	226568862	226568862	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765392279		P-0042802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	263	985	0	ENST00000366794.5:c.1207C>T	p.Arg403Trp	p.R403W	ENST00000366794	NM_001618.3	403	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0042802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	181	530	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858093	9858093	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1064796904		P-0042802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	253	824	0	ENST00000330684.3:c.3308G>A	p.Arg1103His	p.R1103H	ENST00000330684	NM_001134407.1	1103	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	185	1156	0	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	190	661	0	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128028932	128028932	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1427747564		P-0042802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	244	920	0	ENST00000285398.2:c.1925G>A	p.Arg642Gln	p.R642Q	ENST00000285398	NM_000122.1	642	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249510	153249510	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1157879635		P-0042802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	107	558	0	ENST00000281708.4:c.1268G>T	p.Gly423Val	p.G423V	ENST00000281708	NM_033632.3	423	gGa/gTa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589138	67589138	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519757		P-0042802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	110	132	0	ENST00000274335.5:c.1126G>A	p.Gly376Arg	p.G376R	ENST00000274335		376	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112173249	112173249	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs863225321		P-0042802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	145	125	0	ENST00000257430.4:c.1959-1G>A		p.X653_splice	ENST00000257430	NM_000038.5	653																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106508083	106508083	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1339698935		P-0042802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	133	405	0	ENST00000359195.3:c.77G>A	p.Arg26His	p.R26H	ENST00000359195	NM_002649.2	26	cGc/cAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343258	118343258	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs781991683		P-0042851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	24	365	1	ENST00000534358.1:c.1384T>A	p.Ser462Thr	p.S462T	ENST00000534358	NM_005933.3	462	Tca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577577	7577577	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	45	680	0	ENST00000269305.4:c.704del	p.Asn235ThrfsTer12	p.N235Tfs*12	ENST00000269305	NM_001126112.2	235	aAc/ac																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162885	38162885	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs780272184		P-0042851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	57	787	0	ENST00000317025.8:c.2321A>T	p.Tyr774Phe	p.Y774F	ENST00000317025	NM_023034.1	774	tAt/tTt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519922		P-0043041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	63	521	0	ENST00000397062.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000397062	NM_006164.4	79	Gag/Aag																																																																															
FH	2271	MSKCC	GRCh37	1	241682896	241682896	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs200496951		P-0043041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	34	333	0	ENST00000366560.3:c.127C>G	p.Arg43Gly	p.R43G	ENST00000366560	NM_000143.3	43	Cga/Gga																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783617	50783617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	31	358	1	ENST00000398568.2:c.8C>T	p.Ser3Leu	p.S3L	ENST00000398568	NM_001042412.1	3	tCa/tTa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226934	2226934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	26	362	0	ENST00000398665.3:c.4414C>T	p.Pro1472Ser	p.P1472S	ENST00000398665	NM_032482.2	1472	Ccg/Tcg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187522456	187522456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	98	501	0	ENST00000441802.2:c.11607G>A	p.Met3869Ile	p.M3869I	ENST00000441802	NM_005245.3	3869	atG/atA																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931775	39931775	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	75	620	0	ENST00000378444.4:c.2824G>C	p.Asp942His	p.D942H	ENST00000378444	NM_001123385.1	942	Gat/Cat																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0043249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	144	327	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934573		P-0043249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	244	678	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519841		P-0043249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	95	359	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																															
MED12	9968	MSKCC	GRCh37	X	70345913	70345913	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749801457		P-0043249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	135	598	0	ENST00000374080.3:c.2450G>A	p.Arg817His	p.R817H	ENST00000374080		817	cGc/cAc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88681320	88681320	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	76	431	0	ENST00000372037.3:c.1210del	p.Thr404ProfsTer14	p.T404Pfs*14	ENST00000372037	NM_004329.2	404	Acc/cc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257953	19257953	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1179358806		P-0043249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	287	961	1	ENST00000162023.5:c.433G>A	p.Gly145Arg	p.G145R	ENST00000162023		145	Ggg/Agg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111489	8111490	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0043360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	268	588	0	ENST00000346208.3:c.978_979del	p.Trp328GlufsTer23	p.W328Efs*23	ENST00000346208		325	acCAca/acca																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30315380	30315380	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	187	533	0	ENST00000322652.5:c.1065G>C	p.Leu355Phe	p.L355F	ENST00000322652	NM_015355.2	355	ttG/ttC																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30315407	30315407	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	200	564	0	ENST00000322652.5:c.1092G>C	p.Glu364Asp	p.E364D	ENST00000322652	NM_015355.2	364	gaG/gaC																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs193920894		P-0043475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	272	460	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98268715	98268715	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	299	441	0	ENST00000331920.6:c.368C>G	p.Thr123Ser	p.T123S	ENST00000331920	NM_000264.3	123	aCc/aGc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845607	72845607	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	398	648	0	ENST00000268489.5:c.3733C>T	p.Gln1245Ter	p.Q1245*	ENST00000268489	NM_006885.3	1245	Cag/Tag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659743	227659743	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	218	476	0	ENST00000305123.5:c.3712C>G	p.Pro1238Ala	p.P1238A	ENST00000305123	NM_005544.2	1238	Cca/Gca																																																																															
APC	324	MSKCC	GRCh37	5	112163695	112163696	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0043475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	65	244	0	ENST00000257430.4:c.1618_1619del	p.Leu540ThrfsTer19	p.L540Tfs*19	ENST00000257430	NM_000038.5	540	TTa/a																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692900	89692900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	152	339	0	ENST00000371953.3:c.384G>T	p.Lys128Asn	p.K128N	ENST00000371953	NM_000314.4	128	aaG/aaT																																																																															
BCOR	54880	MSKCC	GRCh37	X	39911475	39911475	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	193	258	1	ENST00000378444.4:c.5155G>C	p.Glu1719Gln	p.E1719Q	ENST00000378444	NM_001123385.1	1719	Gaa/Caa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953267	17953267	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	203	618	1	ENST00000458235.1:c.719T>A	p.Met240Lys	p.M240K	ENST00000458235	NM_000215.3	240	aTg/aAg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131930587	131930587	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	55	267	0	ENST00000265335.6:c.1820A>G	p.Asn607Ser	p.N607S	ENST00000265335		607	aAt/aGt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41740034	41740669	+	splice_acceptor_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	CGCGCAGGTTTTTTTGTGTGTGTGGATTTTTTTATTTTTTTTTTTGGTGTTTTTTTTTTCCTTCTCCTCTTCAGCAAATTCTCTGGAACAAGAACAAAAAGTTTTCTGTGAAGTTTTGTTTGCAGGTTCCTCTCTGAATGCAGTCAGTGCTGTAGGTTTGTGGCTGTCAGGGAGGAGAGTTCTGACTGTCTCCGAGTAAGAGAGAAGGAAGGAGGGAGGGAGGGAGGGAGACAGGGAGGGAGGGAGAGACAGGGTGGCGGGGAGACAGACAGAGACAGAGAGAGAGGATGGGAGGGAGACAGAGACAGAGAGAGAGGAGAGAGGGGGAGAGAAGAGAGAGGGAAAGAAGGGGGAGAGAGAGGGAGAGAGGGAGGGAAGGGAGGGGGAGAGGGAGAGAGGGAAAGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGGATTGGCCCTAAGTAAGTGAGTGAATGGAGAGGGAGGGAGTTTGCTGTGAGTAGGGCTGTGATTAGGGAGGGAGGGACAGCCCGTTTTCTGACAGGCTGCTCTCCTTCTGCTCTTAGCTTCCTCACAGACACCTCTCTTCAAATATCACCATTTTCGGGGGTTCTACTTTCTCTTCTAAAATAAATTATC	CGCGCAGGTTTTTTTGTGTGTGTGGATTTTTTTATTTTTTTTTTTGGTGTTTTTTTTTTCCTTCTCCTCTTCAGCAAATTCTCTGGAACAAGAACAAAAAGTTTTCTGTGAAGTTTTGTTTGCAGGTTCCTCTCTGAATGCAGTCAGTGCTGTAGGTTTGTGGCTGTCAGGGAGGAGAGTTCTGACTGTCTCCGAGTAAGAGAGAAGGAAGGAGGGAGGGAGGGAGGGAGACAGGGAGGGAGGGAGAGACAGGGTGGCGGGGAGACAGACAGAGACAGAGAGAGAGGATGGGAGGGAGACAGAGACAGAGAGAGAGGAGAGAGGGGGAGAGAAGAGAGAGGGAAAGAAGGGGGAGAGAGAGGGAGAGAGGGAGGGAAGGGAGGGGGAGAGGGAGAGAGGGAAAGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGGATTGGCCCTAAGTAAGTGAGTGAATGGAGAGGGAGGGAGTTTGCTGTGAGTAGGGCTGTGATTAGGGAGGGAGGGACAGCCCGTTTTCTGACAGGCTGCTCTCCTTCTGCTCTTAGCTTCCTCACAGACACCTCTCTTCAAATATCACCATTTTCGGGGGTTCTACTTTCTCTTCTAAAATAAATTATC	-			P-0043565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	82	193	0	ENST00000242208.4:c.-143-554_-62del		p.X48_splice	ENST00000242208	NM_002192.2	48																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	91	441	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	55	347	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918694	44918694	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	11	238	0	ENST00000377967.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000377967	NM_021140.2	393	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56488228	56488228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	96	586	0	ENST00000267101.3:c.1747C>T	p.Pro583Ser	p.P583S	ENST00000267101	NM_001982.3	583	Ccc/Tcc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372065	45372065	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	59	487	0	ENST00000262160.6:c.1104G>A	p.Trp368Ter	p.W368*	ENST00000262160	NM_005901.5	368	tgG/tgA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101185	27101198	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGGTTGCTCAGC	TGAGGTTGCTCAGC	G			P-0043568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	96	776	1	ENST00000324856.7:c.4467_4480delinsG	p.Glu1490LysfsTer11	p.E1490Kfs*11	ENST00000324856	NM_006015.4	1489	gcTGAGGTTGCTCAGCaa/gcGaa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948451	71948451	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	102	1164	1	ENST00000298229.2:c.3163C>G	p.Pro1055Ala	p.P1055A	ENST00000298229	NM_001567.3	1055	Cct/Gct																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349660	89349660	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	394	820	0	ENST00000301030.4:c.3290A>C	p.Glu1097Ala	p.E1097A	ENST00000301030	NM_001256183.1	1097	gAa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0043638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	183	850	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2227021	2227021	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	126	690	1	ENST00000398665.3:c.4501G>T	p.Val1501Leu	p.V1501L	ENST00000398665	NM_032482.2	1501	Gtg/Ttg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	118	441	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579575	7579575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	256	791	0	ENST00000269305.4:c.112C>T	p.Gln38Ter	p.Q38*	ENST00000269305	NM_001126112.2	38	Caa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591800	48591800	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	141	384	0	ENST00000342988.3:c.963del	p.Glu321AspfsTer15	p.E321Dfs*15	ENST00000342988	NM_005359.5	321	gaG/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	190	337	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	389	818	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175772	112175772	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	112	259	0	ENST00000257430.4:c.4483del	p.Ser1495ValfsTer12	p.S1495Vfs*12	ENST00000257430	NM_000038.5	1494	gAa/ga																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0043722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	247	480	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268144	153268144	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs920052554		P-0043722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	215	265	0	ENST00000281708.4:c.664C>T	p.Arg222Ter	p.R222*	ENST00000281708	NM_033632.3	222	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0043722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	55	146	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0043722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	109	274	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133574	55133574	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373948582		P-0043722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	132	396	0	ENST00000257290.5:c.878G>A	p.Arg293His	p.R293H	ENST00000257290	NM_006206.4	293	cGc/cAc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245712	46245712	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752984515		P-0043722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	90	356	0	ENST00000334344.6:c.3806C>T	p.Pro1269Leu	p.P1269L	ENST00000334344	NM_152641.2	1269	cCg/cTg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871000	12871000	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121917832		P-0043722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	42	343	0	ENST00000228872.4:c.227G>A	p.Trp76Ter	p.W76*	ENST00000228872	NM_004064.3	76	tGg/tAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094422	27094422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	93	467	0	ENST00000324856.7:c.3130G>A	p.Val1044Met	p.V1044M	ENST00000324856	NM_006015.4	1044	Gtg/Atg																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025618	1025618	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1410408833		P-0043722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	106	566	0	ENST00000358495.3:c.757G>A	p.Ala253Thr	p.A253T	ENST00000358495	NM_134424.2	253	Gcc/Acc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265666	10265666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	90	422	0	ENST00000340748.4:c.1511A>G	p.Glu504Gly	p.E504G	ENST00000340748		504	gAg/gGg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067309	37067309	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	82	329	0	ENST00000231790.2:c.1220A>G	p.Gln407Arg	p.Q407R	ENST00000231790	NM_000249.3	407	cAg/cGg																																																																															
APC	324	MSKCC	GRCh37	5	112175643	112175644	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	G			P-0043722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	73	236	0	ENST00000257430.4:c.4352_4353delinsG	p.Glu1451GlyfsTer22	p.E1451Gfs*22	ENST00000257430	NM_000038.5	1451	gAA/gG																																																																															
MST1	4485	MSKCC	GRCh37	3	49721606	49721606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138238101		P-0043787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	10	157	0	ENST00000449682.2:c.2033C>T	p.Pro678Leu	p.P678L	ENST00000449682	NM_020998.3	678	cCa/cTa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858705	9858705	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759145938		P-0043787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	289	346	0	ENST00000330684.3:c.2696G>A	p.Arg899Gln	p.R899Q	ENST00000330684	NM_001134407.1	899	cGg/cAg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94197396	94197396	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	117	369	0	ENST00000323929.3:c.1108A>G	p.Ser370Gly	p.S370G	ENST00000323929	NM_005591.3	370	Agt/Ggt																																																																															
ATR	545	MSKCC	GRCh37	3	142172066	142172066	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	34	315	0	ENST00000350721.4:c.7665G>C	p.Lys2555Asn	p.K2555N	ENST00000350721	NM_001184.3	2555	aaG/aaC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249012	55249013	+	inframe_insertion	In_Frame_Ins	INS	-	-	AACCCCGGT			P-0043787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	596	570	0	ENST00000275493.2:c.2316_2317insGGTAACCCC	p.Pro772_His773insGlyAsnPro	p.P772_H773insGNP	ENST00000275493	NM_005228.3	770	-/AACCCCGGT																																																																															
LYN	4067	MSKCC	GRCh37	8	56863025	56863025	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	135	340	0	ENST00000519728.1:c.292G>C	p.Glu98Gln	p.E98Q	ENST00000519728	NM_002350.3	98	Gaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs786203436		P-0043825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	411	644	0	ENST00000269305.4:c.487T>A	p.Tyr163Asn	p.Y163N	ENST00000269305	NM_001126112.2	163	Tac/Aac																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015094	37015094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	313	511	0	ENST00000358127.4:c.310C>T	p.Arg104Cys	p.R104C	ENST00000358127	NM_001280556.1	104	Cgc/Tgc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588880	69588880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	65	457	0	ENST00000168712.1:c.356C>T	p.Ser119Leu	p.S119L	ENST00000168712	NM_002007.2	119	tCg/tTg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980575	70980575	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1301	169	506	0	ENST00000276594.2:c.802G>T	p.Val268Leu	p.V268L	ENST00000276594	NM_024504.3	268	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	202	666	2	ENST00000269305.4:c.833del	p.Pro278LeufsTer67	p.P278Lfs*67	ENST00000269305	NM_001126112.2	278	cCt/ct																																																																															
APC	324	MSKCC	GRCh37	5	112175240	112175240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	53	238	0	ENST00000257430.4:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000257430	NM_000038.5	1317	Gaa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29661945	29661945	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854552		P-0043936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	114	372	0	ENST00000358273.4:c.5902C>T	p.Arg1968Ter	p.R1968*	ENST00000358273	NM_001042492.2	1968	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140481403	140481403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913357		P-0043936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	127	325	0	ENST00000288602.6:c.1405G>A	p.Gly469Arg	p.G469R	ENST00000288602	NM_004333.4	469	Gga/Aga																																																																															
ABL1	25	MSKCC	GRCh37	9	133738156	133738156	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756003964		P-0043936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	124	405	0	ENST00000318560.5:c.556G>A	p.Val186Ile	p.V186I	ENST00000318560	NM_005157.4	186	Gtc/Atc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851748	134851748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	65	572	0	ENST00000398015.3:c.1154G>A	p.Gly385Asp	p.G385D	ENST00000398015	NM_004441.4	385	gGc/gAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591062	67591070	+	inframe_deletion	In_Frame_Del	DEL	AGGCAGCTG	AGGCAGCTG	-			P-0043936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	64	217	0	ENST00000274335.5:c.1657_1665del	p.Ala553_Glu555del	p.A553_E555del	ENST00000274335		552	cAGGCAGCTGag/cag																																																																															
APC	324	MSKCC	GRCh37	5	112175512	112175512	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	24	312	0	ENST00000257430.4:c.4221del	p.Ser1407ArgfsTer8	p.S1407Rfs*8	ENST00000257430	NM_000038.5	1407	agT/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	191	367	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs867114783		P-0043961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	331	680	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604765	48604766	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0043961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	163	319	0	ENST00000342988.3:c.1589_1590del	p.His530ProfsTer46	p.H530Pfs*46	ENST00000342988	NM_005359.5	529	ttACac/ttac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44950036	44950036	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	280	509	0	ENST00000377967.4:c.3807del	p.Met1270TrpfsTer22	p.M1270Wfs*22	ENST00000377967	NM_021140.2	1269	Ccc/cc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717650	89717650	+	stop_gained	Nonsense_Mutation	SNP	T	T	G	rs1057520900		P-0044061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	259	395	0	ENST00000371953.3:c.675T>G	p.Tyr225Ter	p.Y225*	ENST00000371953	NM_000314.4	225	taT/taG																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979219	93979219	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1009626356		P-0044061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	369	287	0	ENST00000369303.4:c.1609G>A	p.Glu537Lys	p.E537K	ENST00000369303	NM_004440.3	537	Gaa/Aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627950	187627950	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1285798739		P-0044061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	309	564	0	ENST00000441802.2:c.3032C>G	p.Ser1011Cys	p.S1011C	ENST00000441802	NM_005245.3	1011	tCt/tGt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012355	176012355	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0044061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	231	374	0	ENST00000367669.3:c.1579A>T	p.Lys527Ter	p.K527*	ENST00000367669	NM_022457.5	527	Aaa/Taa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944568	71944568	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0044061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	275	506	0	ENST00000298229.2:c.2122+2T>G		p.X708_splice	ENST00000298229	NM_001567.3	708																																																																																
FLT3	2322	MSKCC	GRCh37	13	28622425	28622425	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	162	413	0	ENST00000241453.7:c.1192G>C	p.Asp398His	p.D398H	ENST00000241453	NM_004119.2	398	Gat/Cat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912895	32912895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	117	228	0	ENST00000380152.3:c.4403C>T	p.Ser1468Phe	p.S1468F	ENST00000380152		1468	tCt/tTt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12044491	12044491	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	141	295	0	ENST00000353533.5:c.1114G>T	p.Glu372Ter	p.E372*	ENST00000353533	NM_003010.3	372	Gaa/Taa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131945064	131945064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	152	107	0	ENST00000265335.6:c.3012G>A	p.Met1004Ile	p.M1004I	ENST00000265335		1004	atG/atA																																																																															
AR	367	MSKCC	GRCh37	X	66766134	66766134	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	229	527	0	ENST00000374690.3:c.1146T>A	p.His382Gln	p.H382Q	ENST00000374690	NM_000044.3	382	caT/caA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578495	7578507	+	stop_gained	Nonsense_Mutation	DEL	CAGCTGCACAGGG	CAGCTGCACAGGG	T			P-0044061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	378	684	0	ENST00000269305.4:c.423_435delinsA	p.Cys141_Leu145delinsTer	p.C141_L145delins*	ENST00000269305	NM_001126112.2	141	tgCCCTGTGCAGCTG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0044063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	289	603	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579419	7579420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	224	597	0	ENST00000269305.4:c.267dup	p.Ser90LeufsTer59	p.S90Lfs*59	ENST00000269305	NM_001126112.2	89	-/C																																																																															
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	144	207	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115975	8115975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	41	368	0	ENST00000346208.3:c.1321G>A	p.Ala441Thr	p.A441T	ENST00000346208		441	Gcc/Acc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830138	72830138	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	116	636	0	ENST00000268489.5:c.6443C>A	p.Pro2148His	p.P2148H	ENST00000268489	NM_006885.3	2148	cCt/cAt																																																																															
CBL	867	MSKCC	GRCh37	11	119148963	119148963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	138	489	0	ENST00000264033.4:c.1183C>A	p.Pro395Thr	p.P395T	ENST00000264033	NM_005188.3	395	Ccc/Acc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954009	32954009	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs80359159		P-0044128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	82	460	0	ENST00000380152.3:c.9076C>T	p.Gln3026Ter	p.Q3026*	ENST00000380152		3026	Cag/Tag																																																																															
EZH1	2145	MSKCC	GRCh37	17	40855769	40855773	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTT	CAGTT	-			P-0044128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	120	517	0	ENST00000428826.2:c.2083_2087del	p.Asn695LeufsTer30	p.N695Lfs*30	ENST00000428826		695	AACTGt/t																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	44	407	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579369	7579369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	86	893	0	ENST00000269305.4:c.318C>G	p.Ser106Arg	p.S106R	ENST00000269305	NM_001126112.2	106	agC/agG																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575089	48575089	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	36	420	0	ENST00000342988.3:c.283T>C	p.Tyr95His	p.Y95H	ENST00000342988	NM_005359.5	95	Tat/Cat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105809	27105810	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	51	495	0	ENST00000324856.7:c.5421dup	p.Lys1808Ter	p.K1808*	ENST00000324856	NM_006015.4	1807	agt/agTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48955417	48955417	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs748352319		P-0044222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	46	275	0	ENST00000267163.4:c.1535del	p.Leu512CysfsTer7	p.L512Cfs*7	ENST00000267163	NM_000321.2	511	gaT/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0044296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	237	330	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691187		P-0044296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	207	341	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039708	47039708	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0044296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	277	664	1	ENST00000329236.7:c.926G>A	p.Arg309Lys	p.R309K	ENST00000329236	NM_001204466.1	309	aGg/aAg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63531823	63531823	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	231	433	0	ENST00000307078.5:c.2158C>G	p.Gln720Glu	p.Q720E	ENST00000307078	NM_004655.3	720	Cag/Gag																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170015161	170015161	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	99	405	0	ENST00000295797.4:c.1567C>G	p.Arg523Gly	p.R523G	ENST00000295797	NM_002740.5	523	Cga/Gga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0044367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	216	517	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913355		P-0044367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	113	325	0	ENST00000288602.6:c.1406G>T	p.Gly469Val	p.G469V	ENST00000288602	NM_004333.4	469	gGa/gTa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120178	70120178	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057518216		P-0044367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	249	337	0	ENST00000245479.2:c.1180C>T	p.Arg394Ter	p.R394*	ENST00000245479	NM_000346.3	394	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175215	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0044367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	116	201	0	ENST00000257430.4:c.3925_3926del	p.Glu1309LysfsTer5	p.E1309Kfs*5	ENST00000257430	NM_000038.5	1308	aaAGaa/aaaa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910752	114910770	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTAGGTTCCCTCCCCATA	TCTAGGTTCCCTCCCCATA	-			P-0044367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	130	411	0	ENST00000543371.1:c.876-4_890del		p.X292_splice	ENST00000543371	NM_001198531.1	292																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48573628	48573628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	109	313	0	ENST00000342988.3:c.212G>A	p.Cys71Tyr	p.C71Y	ENST00000342988	NM_005359.5	71	tGt/tAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0044438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	199	383	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0044438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	1112	750	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767326		P-0044438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	39	237	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																															
NUP93	9688	MSKCC	GRCh37	16	56878417	56878417	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs190188561		P-0044438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	83	393	0	ENST00000308159.5:c.2356C>T	p.Arg786Ter	p.R786*	ENST00000308159	NM_014669.4	786	Cga/Tga																																																																															
MLH1	4292	MSKCC	GRCh37	3	37083797	37083797	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	65	350	0	ENST00000231790.2:c.1706C>A	p.Ala569Asp	p.A569D	ENST00000231790	NM_000249.3	569	gCc/gAc																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84403340	84403340	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	86	376	0	ENST00000321945.7:c.145C>T	p.Gln49Ter	p.Q49*	ENST00000321945	NM_139076.2	49	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778720		P-0044439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	242	624	0	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0044439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	112	260	0	ENST00000257430.4:c.4391_4394del	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672258	86672261	+	frameshift_variant	Frame_Shift_Del	DEL	ATGA	ATGA	-			P-0044439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	178	357	0	ENST00000274376.6:c.2063_2066del	p.Glu688GlyfsTer10	p.E688Gfs*10	ENST00000274376	NM_002890.2	687	gATGAa/ga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974783	21974786	+	frameshift_variant	Frame_Shift_Del	DEL	CAGT	CAGT	-			P-0044439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	39	134	0	ENST00000304494.5:c.41_44del	p.Asp14GlyfsTer11	p.D14Gfs*11	ENST00000304494	NM_000077.4	14	gACTGg/gg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390906	139390906	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	271	828	0	ENST00000277541.6:c.7285C>G	p.Leu2429Val	p.L2429V	ENST00000277541	NM_017617.3	2429	Ctg/Gtg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057813	27057814	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs370698486		P-0044439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	190	758	0	ENST00000324856.7:c.1523dup	p.Pro509ThrfsTer114	p.P509Tfs*114	ENST00000324856	NM_006015.4	507	-/C																																																																															
PGR	5241	MSKCC	GRCh37	11	100999785	100999785	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	48	671	0	ENST00000325455.5:c.17C>G	p.Ala6Gly	p.A6G	ENST00000325455	NM_001202474.3	6	gCa/gGa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3645634	3645634	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	49	686	0	ENST00000294008.3:c.1985A>C	p.Lys662Thr	p.K662T	ENST00000294008	NM_032444.2	662	aAg/aCg																																																																															
KDR	3791	MSKCC	GRCh37	4	55956122	55956123	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	ATCT			P-0044439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	153	359	0	ENST00000263923.4:c.3189_3192dup	p.Ala1065ArgfsTer16	p.A1065Rfs*16	ENST00000263923	NM_002253.2	1064	-/AGAT																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0044477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	192	352	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0044477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	166	703	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130435	29130435	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779269031		P-0044477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	209	711	0	ENST00000328354.6:c.275C>T	p.Pro92Leu	p.P92L	ENST00000328354	NM_007194.3	92	cCc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0044477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	77	218	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106730	27106730	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773818181		P-0044477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	152	612	0	ENST00000324856.7:c.6341C>T	p.Pro2114Leu	p.P2114L	ENST00000324856	NM_006015.4	2114	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	140	355	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882019		P-0044512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	200	866	0	ENST00000269305.4:c.455dup	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216504	36216504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	68	848	1	ENST00000222270.7:c.3767G>T	p.Gly1256Val	p.G1256V	ENST00000222270	NM_014727.1	1256	gGa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0044549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	163	532	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731214	162731214	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	20	243	0	ENST00000367921.3:c.1069A>T	p.Met357Leu	p.M357L	ENST00000367921	NM_006182.2	357	Atg/Ttg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661785	227661785	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	53	511	0	ENST00000305123.5:c.1670C>A	p.Ala557Asp	p.A557D	ENST00000305123	NM_005544.2	557	gCc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0044567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	34	565	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175360	112175360	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	14	243	0	ENST00000257430.4:c.4069G>T	p.Gly1357Ter	p.G1357*	ENST00000257430	NM_000038.5	1357	Gga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0044765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	177	357	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0044765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	322	711	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440713	56440713	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	247	555	0	ENST00000407977.2:c.505G>C	p.Ala169Pro	p.A169P	ENST00000407977		169	Gct/Cct																																																																															
ATR	545	MSKCC	GRCh37	3	142172076	142172076	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0044765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	26	302	0	ENST00000350721.4:c.7656-1G>A		p.X2552_splice	ENST00000350721	NM_001184.3	2552																																																																																
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	44	326	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	80	368	0	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	39	219	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	82	565	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355266	15355266	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770044101		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	54	274	0	ENST00000263377.2:c.2357C>T	p.Pro786Leu	p.P786L	ENST00000263377	NM_058243.2	786	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	52	300	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	33	156	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780068		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	118	578	0	ENST00000269305.4:c.472C>T	p.Arg158Cys	p.R158C	ENST00000269305	NM_001126112.2	158	Cgc/Tgc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226294	2226294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	84	621	0	ENST00000326181.6:c.1907C>T	p.Thr636Met	p.T636M	ENST00000326181	NM_032271.2	636	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112154721	112154721	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745918184		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	43	306	0	ENST00000257430.4:c.992C>T	p.Ser331Leu	p.S331L	ENST00000257430	NM_000038.5	331	tCg/tTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	117	315	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265323	152265323	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866869178		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	35	245	0	ENST00000206249.3:c.776G>A	p.Arg259Gln	p.R259Q	ENST00000206249	NM_000125.3	259	cGa/cAa																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979986	7979987	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs746723399		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	100	579	0	ENST00000319144.4:c.1350dup	p.Leu451AlafsTer27	p.L451Afs*27	ENST00000319144	NM_001139.2	450	-/G																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413710	138413710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	49	334	3	ENST00000289153.2:c.1810del	p.Arg604GlyfsTer4	p.R604Gfs*4	ENST00000289153	NM_006219.2	604	Cgg/gg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163307846	163307846	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61747498		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	30	278	0	ENST00000271452.3:c.472G>A	p.Ala158Thr	p.A158T	ENST00000271452	NM_145697.2	158	Gca/Aca																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	101	339	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998128	169998128	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs753143066		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	135	389	3	ENST00000295797.4:c.826del	p.Thr276GlnfsTer7	p.T276Qfs*7	ENST00000295797	NM_002740.5	273	ttA/tt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625303	69625303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	132	629	0	ENST00000334134.2:c.490C>T	p.Arg164Cys	p.R164C	ENST00000334134	NM_005247.2	164	Cgc/Tgc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115272956	115272956	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1178464540		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	77	481	0	ENST00000438362.2:c.1417C>T	p.Arg473Cys	p.R473C	ENST00000438362	NM_001242891.1	473	Cgt/Tgt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012386	152012386	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	26	257	1	ENST00000262189.6:c.427del	p.Ser143ValfsTer3	p.S143Vfs*3	ENST00000262189	NM_170606.2	143	Agt/gt																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793363	242793363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	101	640	0	ENST00000334409.5:c.714del	p.Val239CysfsTer39	p.V239Cfs*39	ENST00000334409	NM_005018.2	238	ccC/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223614	36223614	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	99	675	1	ENST00000222270.7:c.6169del	p.Arg2057AlafsTer34	p.R2057Afs*34	ENST00000222270	NM_014727.1	2055	gCc/gc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89352576	89352576	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762710349		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	86	350	0	ENST00000301030.4:c.763C>T	p.Arg255Trp	p.R255W	ENST00000301030	NM_001256183.1	255	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431178	49431178	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs793888512		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	87	600	1	ENST00000301067.7:c.9961C>T	p.Arg3321Ter	p.R3321*	ENST00000301067	NM_003482.3	3321	Cga/Tga																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182662920	182662920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	39	308	0	ENST00000292782.4:c.742C>T	p.Arg248Cys	p.R248C	ENST00000292782	NM_020640.2	248	Cgc/Tgc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277992	41277992	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	40	269	0	ENST00000349496.5:c.1954+2T>C		p.X652_splice	ENST00000349496	NM_001904.3	652																																																																																
FLT1	2321	MSKCC	GRCh37	13	28877423	28877423	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750346448		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	73	407	0	ENST00000282397.4:c.3898G>A	p.Val1300Ile	p.V1300I	ENST00000282397	NM_002019.4	1300	Gtc/Atc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752799	57752800	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	38	198	0	ENST00000274289.3:c.1128dup	p.Asp377ArgfsTer7	p.D377Rfs*7	ENST00000274289	NM_006622.3	376	-/A																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843553	3843553	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	62	369	0	ENST00000262367.5:c.1050del	p.Lys350AsnfsTer4	p.K350Nfs*4	ENST00000262367	NM_004380.2	350	aaA/aa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100793	8100793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	65	541	1	ENST00000346208.3:c.767G>A	p.Arg256Gln	p.R256Q	ENST00000346208		256	cGg/cAg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375668	118375668	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	52	314	0	ENST00000534358.1:c.9061A>C	p.Asn3021His	p.N3021H	ENST00000534358	NM_005933.3	3021	Aac/Cac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376499	118376499	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	35	282	0	ENST00000534358.1:c.9892T>C	p.Tyr3298His	p.Y3298H	ENST00000534358	NM_005933.3	3298	Tat/Cat																																																																															
POLE	5426	MSKCC	GRCh37	12	133257248	133257248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774404704		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	59	348	0	ENST00000320574.5:c.230G>A	p.Arg77His	p.R77H	ENST00000320574	NM_006231.2	77	cGc/cAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858692	9858693	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	39	337	0	ENST00000330684.3:c.2708dup	p.Asn903LysfsTer21	p.N903Kfs*21	ENST00000330684	NM_001134407.1	903	aac/aaAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831731	72831731	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	83	388	0	ENST00000268489.5:c.4850C>A	p.Ser1617Tyr	p.S1617Y	ENST00000268489	NM_006885.3	1617	tCt/tAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89337251	89337251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	63	356	0	ENST00000301030.4:c.7780G>A	p.Val2594Met	p.V2594M	ENST00000301030	NM_001256183.1	2594	Gtg/Atg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58677786	58677786	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	53	452	0	ENST00000305921.3:c.11T>C	p.Leu4Pro	p.L4P	ENST00000305921	NM_003620.3	4	cTg/cCg																																																																															
AKT2	208	MSKCC	GRCh37	19	40741860	40741860	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778561687		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	78	464	2	ENST00000392038.2:c.1112G>A	p.Arg371His	p.R371H	ENST00000392038	NM_001626.4	371	cGc/cAc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484417	57484417	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	57	328	0	ENST00000371085.3:c.598T>C	p.Cys200Arg	p.C200R	ENST00000371085	NM_000516.4	200	Tgc/Cgc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626047	12626047	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881007		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	67	340	0	ENST00000251849.4:c.1913C>T	p.Thr638Met	p.T638M	ENST00000251849	NM_002880.3	638	aCg/aTg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067316	37067316	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	60	339	0	ENST00000231790.2:c.1228del	p.Ala410ProfsTer81	p.A410Pfs*81	ENST00000231790	NM_000249.3	409	caG/ca																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163746	47163746	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	47	334	0	ENST00000409792.3:c.2380T>C	p.Tyr794His	p.Y794H	ENST00000409792	NM_014159.6	794	Tac/Cac																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38947373	38947373	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	18	121	0	ENST00000357387.3:c.4307T>C	p.Ile1436Thr	p.I1436T	ENST00000357387	NM_152756.3	1436	aTa/aCa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117718159	117718159	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	49	356	0	ENST00000368508.3:c.698T>C	p.Ile233Thr	p.I233T	ENST00000368508	NM_002944.2	233	aTc/aCc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151864366	151864366	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	58	294	0	ENST00000262189.6:c.9615C>G	p.His3205Gln	p.H3205Q	ENST00000262189	NM_170606.2	3205	caC/caG																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231343	98231343	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	90	547	0	ENST00000331920.6:c.1940G>C	p.Ser647Thr	p.S647T	ENST00000331920	NM_000264.3	647	aGc/aCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0044881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	605	619	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0044881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	60	267	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0044881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	142	428	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1422891742		P-0044881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	153	456	2	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117677912	117677912	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	166	371	0	ENST00000368508.3:c.4021G>C	p.Ala1341Pro	p.A1341P	ENST00000368508	NM_002944.2	1341	Gct/Cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0048606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	223	951	2	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	121	767	0	ENST00000342988.3:c.1055G>T	p.Gly352Val	p.G352V	ENST00000342988	NM_005359.5	352	gGa/gTa																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428327	33428327	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781813		P-0048606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	173	717	0	ENST00000335858.7:c.460C>T	p.Arg154Cys	p.R154C	ENST00000335858	NM_133629.2	154	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112151191	112151191	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0048606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	65	495	0	ENST00000257430.4:c.835-1G>A		p.X279_splice	ENST00000257430	NM_000038.5	279																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72827429	72827429	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	147	843	0	ENST00000268489.5:c.9152A>C	p.Lys3051Thr	p.K3051T	ENST00000268489	NM_006885.3	3051	aAa/aCa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52662914	52662914	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1348721028		P-0048606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	251	550	0	ENST00000394830.3:c.1439T>C	p.Met480Thr	p.M480T	ENST00000394830	NM_018313.4	480	aTg/aCg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026096	71026096	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	75	474	0	ENST00000318789.4:c.1526G>C	p.Trp509Ser	p.W509S	ENST00000318789	NM_032682.5	509	tGg/tCg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540508	187540508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	116	614	0	ENST00000441802.2:c.7232G>T	p.Cys2411Phe	p.C2411F	ENST00000441802	NM_005245.3	2411	tGt/tTt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741671	145741671	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749625708		P-0048606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	845	1002	2	ENST00000428558.2:c.832G>A	p.Glu278Lys	p.E278K	ENST00000428558	NM_004260.3	278	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112157613	112157613	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	57	563	0	ENST00000257430.4:c.1333C>T	p.Gln445Ter	p.Q445*	ENST00000257430	NM_000038.5	445	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112176027	112176030	+	frameshift_variant	Frame_Shift_Del	DEL	TTAT	TTAT	-			P-0048723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	54	336	0	ENST00000257430.4:c.4738_4741del	p.Ile1580LeufsTer69	p.I1580Lfs*69	ENST00000257430	NM_000038.5	1579	aTTATt/at																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2491282	2491282	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1357340259		P-0048723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	172	831	2	ENST00000355716.4:c.325C>T	p.Arg109Trp	p.R109W	ENST00000355716	NM_003820.2	109	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577021	7577022	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTTA			P-0048723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	311	673	0	ENST00000269305.4:c.912_916dup	p.Arg306LeufsTer41	p.R306Lfs*41	ENST00000269305	NM_001126112.2	306	cga/cTAAGCga																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25964948	25964948	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	104	535	1	ENST00000435504.4:c.4258G>T	p.Asp1420Tyr	p.D1420Y	ENST00000435504		1420	Gat/Tat																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775731	9775731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	60	970	4	ENST00000377346.4:c.274G>A	p.Val92Met	p.V92M	ENST00000377346	NM_005026.3	92	Gtg/Atg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255883	16255883	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	96	489	2	ENST00000375759.3:c.3154del	p.Ile1052SerfsTer40	p.I1052Sfs*40	ENST00000375759	NM_015001.2	1050	Aaa/aa																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78444588	78444588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	78	563	0	ENST00000370768.2:c.101C>T	p.Ala34Val	p.A34V	ENST00000370768	NM_003902.3	34	gCa/gTa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	195	492	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
BIRC3	330	MSKCC	GRCh37	11	102206727	102206727	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	73	461	0	ENST00000263464.3:c.1355T>C	p.Met452Thr	p.M452T	ENST00000263464	NM_001165.4	452	aTg/aCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424087	49424087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs558561472		P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	141	726	1	ENST00000301067.7:c.13975C>T	p.Arg4659Trp	p.R4659W	ENST00000301067	NM_003482.3	4659	Cgg/Tgg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964203	28964203	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144651121		P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	70	371	1	ENST00000282397.4:c.1699C>T	p.Pro567Ser	p.P567S	ENST00000282397	NM_002019.4	567	Ccg/Tcg																																																																															
BLM	641	MSKCC	GRCh37	15	91352484	91352484	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1031421025		P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	57	355	0	ENST00000355112.3:c.3869C>T	p.Ser1290Leu	p.S1290L	ENST00000355112	NM_000057.2	1290	tCg/tTg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99486193	99486193	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374121578		P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	44	690	1	ENST00000268035.6:c.3499C>T	p.Arg1167Trp	p.R1167W	ENST00000268035	NM_000875.3	1167	Cgg/Tgg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781194	3781194	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	109	847	0	ENST00000262367.5:c.5171A>G	p.Glu1724Gly	p.E1724G	ENST00000262367	NM_004380.2	1724	gAg/gGg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350068	89350068	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750887042		P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	154	859	0	ENST00000301030.4:c.2882G>A	p.Arg961His	p.R961H	ENST00000301030	NM_001256183.1	961	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577563	7577563	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	36	644	0	ENST00000269305.4:c.718A>C	p.Ser240Arg	p.S240R	ENST00000269305	NM_001126112.2	240	Agt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578397	7578397	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	29	767	0	ENST00000269305.4:c.533A>G	p.His178Arg	p.H178R	ENST00000269305	NM_001126112.2	178	cAc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	169	784	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29490288	29490288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876659418		P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	84	497	0	ENST00000358273.4:c.373C>T	p.Arg125Cys	p.R125C	ENST00000358273	NM_001042492.2	125	Cgt/Tgt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881103	37881103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775752713		P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	165	845	0	ENST00000269571.5:c.2432G>A	p.Arg811Gln	p.R811Q	ENST00000269571		811	cGg/cAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	152	849	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	176	737	3	ENST00000407977.2:c.349del	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18963836	18963836	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	69	540	0	ENST00000262803.5:c.1013A>G	p.Asn338Ser	p.N338S	ENST00000262803	NM_002911.3	338	aAc/aGc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30312916	30312916	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146040933		P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	105	586	0	ENST00000262643.3:c.719G>A	p.Arg240His	p.R240H	ENST00000262643	NM_001238.2	240	cGt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211047	36211047	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	184	952	1	ENST00000222270.7:c.798G>A	p.Trp266Ter	p.W266*	ENST00000222270	NM_014727.1	266	tgG/tgA																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868404	45868404	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372425466		P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	58	858	2	ENST00000391945.4:c.373C>T	p.Arg125Cys	p.R125C	ENST00000391945	NM_000400.3	125	Cgc/Tgc																																																																															
ALK	238	MSKCC	GRCh37	2	29446229	29446229	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199987354		P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	86	646	0	ENST00000389048.3:c.3338G>A	p.Arg1113Gln	p.R1113Q	ENST00000389048	NM_004304.4	1113	cGg/cAg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212570075	212570075	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	81	439	1	ENST00000342788.4:c.1166T>C	p.Leu389Pro	p.L389P	ENST00000342788	NM_005235.2	389	cTg/cCg																																																																															
INHA	3623	MSKCC	GRCh37	2	220439701	220439701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	108	1051	0	ENST00000243786.2:c.554C>T	p.Ala185Val	p.A185V	ENST00000243786	NM_002191.3	185	gCt/gTt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024287	31024287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	92	535	0	ENST00000375687.4:c.3772G>A	p.Ala1258Thr	p.A1258T	ENST00000375687	NM_015338.5	1258	Gct/Act																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100934	41100934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	36	635	0	ENST00000373198.4:c.1422G>T	p.Glu474Asp	p.E474D	ENST00000373198	NM_133170.3	474	gaG/gaT																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24167512	24167512	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1362758319		P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	56	779	1	ENST00000263121.7:c.896C>T	p.Ser299Leu	p.S299L	ENST00000263121	NM_003073.3	299	tCg/tTg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998128	169998128	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs753143066		P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	92	620	0	ENST00000295797.4:c.826del	p.Thr276GlnfsTer7	p.T276Qfs*7	ENST00000295797	NM_002740.5	273	ttA/tt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	30	462	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1940200	1940200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	46	273	0	ENST00000382895.3:c.1697C>T	p.Thr566Met	p.T566M	ENST00000382895	NM_133330.2	566	aCg/aTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183324	56183324	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	111	523	0	ENST00000399503.3:c.4234A>G	p.Thr1412Ala	p.T1412A	ENST00000399503	NM_005921.1	1412	Aca/Gca																																																																															
APC	324	MSKCC	GRCh37	5	112151245	112151246	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	59	444	0	ENST00000257430.4:c.893_894del	p.His298LeufsTer28	p.H298Lfs*28	ENST00000257430	NM_000038.5	296	agCAca/agca																																																																															
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	50	368	0	ENST00000257430.4:c.4393_4394dup	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																																																															
RAD50	10111	MSKCC	GRCh37	5	131951812	131951812	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	53	281	3	ENST00000265335.6:c.3154C>T	p.Gln1052Ter	p.Q1052*	ENST00000265335		1052	Caa/Taa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163553	32163554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs777647776		P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	167	821	3	ENST00000375023.3:c.5672dup	p.Gly1892ArgfsTer24	p.G1892Rfs*24	ENST00000375023	NM_004557.3	1891	ggc/ggGc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163864	32163864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	118	732	0	ENST00000375023.3:c.5362G>T	p.Gly1788Trp	p.G1788W	ENST00000375023	NM_004557.3	1788	Ggg/Tgg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	47	418	5	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
HGF	3082	MSKCC	GRCh37	7	81381528	81381528	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776090604		P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	59	360	1	ENST00000222390.5:c.533G>A	p.Arg178Gln	p.R178Q	ENST00000222390	NM_000601.4	178	cGa/cAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151855967	151855967	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140246095		P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	75	498	0	ENST00000262189.6:c.11651C>T	p.Thr3884Met	p.T3884M	ENST00000262189	NM_170606.2	3884	aCg/aTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209648	98209648	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs386833412		P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	121	844	0	ENST00000331920.6:c.3890G>A	p.Arg1297Gln	p.R1297Q	ENST00000331920	NM_000264.3	1297	cGg/cAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405201	139405201	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767886377		P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	180	1007	2	ENST00000277541.6:c.2644G>A	p.Ala882Thr	p.A882T	ENST00000277541	NM_017617.3	882	Gca/Aca																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139802657	139802657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	162	771	1	ENST00000247668.2:c.502G>A	p.Ala168Thr	p.A168T	ENST00000247668	NM_021138.3	168	Gca/Aca																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53247031	53247031	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	139	739	0	ENST00000375401.3:c.469T>C	p.Tyr157His	p.Y157H	ENST00000375401	NM_004187.3	157	Tac/Cac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913382	32913382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0053329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	64	459	1	ENST00000380152.3:c.4894del	p.Ser1632ValfsTer4	p.S1632Vfs*4	ENST00000380152		1630	tcA/tc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78727949	78727949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	177	629	0	ENST00000306801.3:c.794C>T	p.Ser265Phe	p.S265F	ENST00000306801	NM_020761.2	265	tCc/tTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097176	11097176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	366	842	1	ENST00000344626.4:c.667C>T	p.Pro223Ser	p.P223S	ENST00000344626	NM_003072.3	223	Ccc/Tcc																																																																															
IRF4	3662	MSKCC	GRCh37	6	405027	405027	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs568315642		P-0053329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	113	402	0	ENST00000380956.4:c.1109C>T	p.Ala370Val	p.A370V	ENST00000380956	NM_001195286.1	370	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	37	378	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	21	228	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	38	352	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161689	56161689	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1490957244		P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	37	448	1	ENST00000399503.3:c.1186C>T	p.Arg396Cys	p.R396C	ENST00000399503	NM_005921.1	396	Cgt/Tgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913294		P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	34	488	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	35	350	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	58	488	1	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	66	731	0	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																																																															
ATR	545	MSKCC	GRCh37	3	142274854	142274854	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769252606		P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	42	468	0	ENST00000350721.4:c.2206G>A	p.Gly736Arg	p.G736R	ENST00000350721	NM_001184.3	736	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	72	711	1	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882050	36882050	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	94	1092	6	ENST00000358127.4:c.963del	p.Ala322LeufsTer11	p.A322Lfs*11	ENST00000358127	NM_001280556.1	321	ccC/cc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	93	447	7	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	73	618	1	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458420	120458420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	67	716	0	ENST00000256646.2:c.6925C>T	p.Leu2309Phe	p.L2309F	ENST00000256646	NM_024408.3	2309	Ctc/Ttc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39916463	39916463	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	91	430	1	ENST00000378444.4:c.4540C>T	p.Arg1514Ter	p.R1514*	ENST00000378444	NM_001123385.1	1514	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092965	27092965	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	36	373	0	ENST00000324856.7:c.2896G>T	p.Glu966Ter	p.E966*	ENST00000324856	NM_006015.4	966	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175720	112175720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	32	267	0	ENST00000257430.4:c.4429C>T	p.Gln1477Ter	p.Q1477*	ENST00000257430	NM_000038.5	1477	Cag/Tag																																																																															
INSR	3643	MSKCC	GRCh37	19	7172340	7172340	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181150880		P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	77	502	1	ENST00000302850.5:c.1229G>A	p.Arg410Gln	p.R410Q	ENST00000302850	NM_000208.2	410	cGg/cAg																																																																															
ERG	2078	MSKCC	GRCh37	21	39755585	39755585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	49	626	0	ENST00000288319.7:c.1180G>A	p.Gly394Arg	p.G394R	ENST00000288319	NM_182918.3	394	Ggg/Agg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	99	585	9	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	74	621	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561289	9561289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs985722631		P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	49	466	0	ENST00000353224.5:c.493G>A	p.Ala165Thr	p.A165T	ENST00000353224	NM_177990.2	165	Gca/Aca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	140	1299	4	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs878854073		P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	63	541	1	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
RPTOR	57521	MSKCC	GRCh37	17	78866595	78866595	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	80	735	0	ENST00000306801.3:c.2168A>G	p.Tyr723Cys	p.Y723C	ENST00000306801	NM_020761.2	723	tAt/tGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012386	152012386	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	38	318	1	ENST00000262189.6:c.427del	p.Ser143ValfsTer3	p.S143Vfs*3	ENST00000262189	NM_170606.2	143	Agt/gt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989591	212989592	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	34	312	0	ENST00000342788.4:c.119_120del	p.Ser40Ter	p.S40*	ENST00000342788	NM_005235.2	40	tCT/t																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646980	23646981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1060502767		P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	66	698	0	ENST00000261584.4:c.886dup	p.Met296AsnfsTer7	p.M296Nfs*7	ENST00000261584	NM_024675.3	296	atg/aAtg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782079	9782079	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	85	1033	0	ENST00000377346.4:c.2102T>G	p.Leu701Arg	p.L701R	ENST00000377346	NM_005026.3	701	cTg/cGg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230807	66230807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	16	361	0	ENST00000273854.3:c.2164C>A	p.Leu722Ile	p.L722I	ENST00000273854	NM_004439.5	722	Cta/Ata																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347765	89347765	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368667754		P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	62	845	0	ENST00000301030.4:c.5185G>A	p.Ala1729Thr	p.A1729T	ENST00000301030	NM_001256183.1	1729	Gcc/Acc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946233	71946233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	77	833	0	ENST00000298229.2:c.2489G>A	p.Gly830Asp	p.G830D	ENST00000298229	NM_001567.3	830	gGc/gAc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281324	49281324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	74	832	1	ENST00000282018.3:c.371G>A	p.Ser124Asn	p.S124N	ENST00000282018	NM_020377.2	124	aGc/aAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42034772	42034773	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	55	514	0	ENST00000219905.7:c.4618_4619del	p.Gln1540ValfsTer5	p.Q1540Vfs*5	ENST00000219905	NM_001164273.1	1538	ttCAca/ttca																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67358503	67358503	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	12	304	0	ENST00000327367.4:c.11T>C	p.Ile4Thr	p.I4T	ENST00000327367	NM_005902.3	4	aTc/aCc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805049	89805049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	91	979	0	ENST00000389301.3:c.4328C>T	p.Ala1443Val	p.A1443V	ENST00000389301	NM_000135.2	1443	gCc/gTc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119890	70119890	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	57	875	0	ENST00000245479.2:c.892C>A	p.Leu298Met	p.L298M	ENST00000245479	NM_000346.3	298	Ctg/Atg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221227	5221227	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771119355		P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	81	839	0	ENST00000357368.4:c.3239G>A	p.Arg1080His	p.R1080H	ENST00000357368	NM_002850.3	1080	cGt/cAt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99180026	99180026	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs774985949		P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	77	829	0	ENST00000074304.5:c.1969A>G	p.Met657Val	p.M657V	ENST00000074304	NM_001134224.1	657	Atg/Gtg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212578268	212578269	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	35	421	0	ENST00000342788.4:c.988dup	p.Cys330LeufsTer6	p.C330Lfs*6	ENST00000342788	NM_005235.2	330	tgc/tTgc																																																																															
BARD1	580	MSKCC	GRCh37	2	215610565	215610565	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	40	403	0	ENST00000260947.4:c.1691A>T	p.Gln564Leu	p.Q564L	ENST00000260947	NM_000465.2	564	cAg/cTg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326103	62326103	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	83	988	0	ENST00000482936.1:c.3119G>A	p.Gly1040Asp	p.G1040D	ENST00000482936		1040	gGc/gAc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37035054	37035066	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGTTATTCGGC	GGGGTTATTCGGC	-			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	133	506	0	ENST00000231790.2:c.18_30del	p.Val7TrpfsTer6	p.V7Wfs*6	ENST00000231790	NM_000249.3	6	GGGGTTATTCGGCgg/gg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37089061	37089061	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	46	383	0	ENST00000231790.2:c.1783A>G	p.Ser595Gly	p.S595G	ENST00000231790	NM_000249.3	595	Agt/Ggt																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665309	138665309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	72	1074	2	ENST00000330315.3:c.256G>A	p.Ala86Thr	p.A86T	ENST00000330315	NM_023067.3	86	Gcg/Acg																																																																															
ATR	545	MSKCC	GRCh37	3	142280140	142280140	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757006178		P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	49	527	1	ENST00000350721.4:c.1294C>T	p.Arg432Cys	p.R432C	ENST00000350721	NM_001184.3	432	Cgt/Tgt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911281	29911281	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	51	748	0	ENST00000376809.5:c.580A>G	p.Arg194Gly	p.R194G	ENST00000376809	NM_002116.7	194	Aga/Gga																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29913041	29913042	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	81	640	0	ENST00000376809.5:c.1077_1078del	p.Leu360HisfsTer4	p.L360Hfs*4	ENST00000376809	NM_002116.7	359	tCC/t																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323294	31323296	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	10	233	0	ENST00000412585.2:c.693_695del	p.Phe232del	p.F232del	ENST00000412585	NM_005514.6	231	ggTTTc/ggc																																																																															
TEK	7010	MSKCC	GRCh37	9	27213552	27213552	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	58	503	0	ENST00000380036.4:c.2948T>C	p.Phe983Ser	p.F983S	ENST00000380036	NM_000459.3	983	tTt/tCt																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	86	495	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	33	275	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	9	429	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117638325	117638325	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3752566		P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	28	477	0	ENST00000368508.3:c.6116G>A	p.Arg2039His	p.R2039H	ENST00000368508	NM_002944.2	2039	cGt/cAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	186	766	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	44	381	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	38	348	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434170	121434170	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757068809		P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	124	668	0	ENST00000257555.6:c.1061C>T	p.Thr354Met	p.T354M	ENST00000257555		354	aCg/aTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636729	8636729	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	100	421	0	ENST00000356435.5:c.180del	p.Gly61GlufsTer11	p.G61Efs*11	ENST00000356435		60	aaA/aa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255883	16255883	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	41	497	0	ENST00000375759.3:c.3154del	p.Ile1052SerfsTer40	p.I1052Sfs*40	ENST00000375759	NM_015001.2	1050	Aaa/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	121	464	7	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	164	764	1	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245445	46245445	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1390936994		P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	82	628	1	ENST00000334344.6:c.3539C>T	p.Thr1180Met	p.T1180M	ENST00000334344	NM_152641.2	1180	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112151245	112151246	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	48	405	0	ENST00000257430.4:c.893_894del	p.His298LeufsTer28	p.H298Lfs*28	ENST00000257430	NM_000038.5	296	agCAca/agca																																																																															
BRAF	673	MSKCC	GRCh37	7	140482926	140482927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs777474487		P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	45	634	1	ENST00000288602.6:c.1208dup	p.Ala404CysfsTer9	p.A404Cfs*9	ENST00000288602	NM_004333.4	403	cct/ccCt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399389	139399389	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	15	608	0	ENST00000277541.6:c.4754T>C	p.Leu1585Pro	p.L1585P	ENST00000277541	NM_017617.3	1585	cTg/cCg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198285832	198285832	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775351918		P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	43	408	0	ENST00000335508.6:c.221C>T	p.Thr74Met	p.T74M	ENST00000335508	NM_012433.2	74	aCg/aTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966873	25966873	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1271466699		P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	71	660	2	ENST00000435504.4:c.2333del	p.Pro778GlnfsTer21	p.P778Qfs*21	ENST00000435504		778	cCa/ca																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188893	32188893	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144962111		P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	34	695	0	ENST00000375023.3:c.661C>T	p.Leu221Phe	p.L221F	ENST00000375023	NM_004557.3	221	Ctc/Ttc																																																																															
TP63	8626	MSKCC	GRCh37	3	189582192	189582192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	104	494	0	ENST00000264731.3:c.751C>T	p.Arg251Cys	p.R251C	ENST00000264731	NM_003722.4	251	Cgt/Tgt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36940987	36940987	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs928090621		P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	56	541	0	ENST00000361632.4:c.352C>T	p.Arg118Cys	p.R118C	ENST00000361632		118	Cgc/Tgc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524568	103524568	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	16	437	1	ENST00000355739.4:c.2705del	p.Asn902IlefsTer4	p.N902Ifs*4	ENST00000355739	NM_000123.3	900	cAa/ca																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112323	115112324	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-	rs1381943852		P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	89	596	0	ENST00000257566.3:c.1416_1417del	p.Leu473ProfsTer218	p.L473Pfs*218	ENST00000257566	NM_016569.3	472	gcGCtc/gctc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561324	9561324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	69	514	0	ENST00000353224.5:c.458G>T	p.Gly153Val	p.G153V	ENST00000353224	NM_177990.2	153	gGa/gTa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562160	21562160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	21	720	0	ENST00000382592.4:c.1759G>A	p.Glu587Lys	p.E587K	ENST00000382592	NM_014572.2	587	Gaa/Aaa																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61213502	61213502	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778585796		P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	91	474	1	ENST00000301761.2:c.460C>T	p.Arg154Cys	p.R154C	ENST00000301761	NM_017841.2	154	Cgt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821875	72821875	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	68	683	5	ENST00000268489.5:c.10300del	p.Leu3434SerfsTer51	p.L3434Sfs*51	ENST00000268489	NM_006885.3	3434	Ctc/tc																																																																															
ABL1	25	MSKCC	GRCh37	9	133753838	133753838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	67	477	0	ENST00000318560.5:c.1307G>A	p.Gly436Asp	p.G436D	ENST00000318560	NM_005157.4	436	gGc/gAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948386	71948386	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760694548		P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	77	703	0	ENST00000298229.2:c.3098G>A	p.Arg1033His	p.R1033H	ENST00000298229	NM_001567.3	1033	cGt/cAt																																																																															
RRAS	6237	MSKCC	GRCh37	19	50139920	50139920	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757080959		P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	42	527	0	ENST00000246792.3:c.409G>A	p.Val137Ile	p.V137I	ENST00000246792	NM_006270.3	137	Gtt/Att																																																																															
KDR	3791	MSKCC	GRCh37	4	55973917	55973917	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1404646083		P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	18	586	0	ENST00000263923.4:c.1399G>A	p.Ala467Thr	p.A467T	ENST00000263923	NM_002253.2	467	Gcc/Acc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711924	89711924	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	45	301	0	ENST00000371953.3:c.542T>C	p.Leu181Pro	p.L181P	ENST00000371953	NM_000314.4	181	cTg/cCg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912440	50912440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	58	510	0	ENST00000440232.2:c.1954C>T	p.Arg652Trp	p.R652W	ENST00000440232	NM_002691.3	652	Cgg/Tgg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775713	9775713	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	83	609	0	ENST00000377346.4:c.256C>T	p.Gln86Ter	p.Q86*	ENST00000377346	NM_005026.3	86	Caa/Taa																																																																															
MED12	9968	MSKCC	GRCh37	X	70345912	70345912	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863223702		P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	57	240	0	ENST00000374080.3:c.2449C>T	p.Arg817Cys	p.R817C	ENST00000374080		817	Cgc/Tgc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	51	514	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440137	49440137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	105	666	0	ENST00000301067.7:c.4489C>T	p.His1497Tyr	p.H1497Y	ENST00000301067	NM_003482.3	1497	Cac/Tac																																																																															
NADK	65220	MSKCC	GRCh37	1	1684395	1684395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	139	605	1	ENST00000341426.5:c.1289G>A	p.Arg430Gln	p.R430Q	ENST00000341426	NM_023018.4	430	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101627	27101627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	27	681	0	ENST00000324856.7:c.4909C>T	p.Arg1637Trp	p.R1637W	ENST00000324856	NM_006015.4	1637	Cgg/Tgg																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521596	46521596	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	45	365	0	ENST00000262741.5:c.812A>G	p.His271Arg	p.H271R	ENST00000262741	NM_003629.3	271	cAt/cGt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206669478	206669478	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	60	434	0	ENST00000367120.3:c.2151A>G	p.Ter717TrpextTer6	p.*717Wext*6	ENST00000367120	NM_014002.3	717	tgA/tgG																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88676927	88676927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			60	27	171	0	ENST00000372037.3:c.712C>T	p.Arg238Trp	p.R238W	ENST00000372037	NM_004329.2	238	Cgg/Tgg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631171	69631171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	12	560	0	ENST00000334134.2:c.241G>A	p.Val81Met	p.V81M	ENST00000334134	NM_005247.2	81	Gtg/Atg																																																																															
MGA	23269	MSKCC	GRCh37	15	42042686	42042686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	18	621	0	ENST00000219905.7:c.6881C>T	p.Ala2294Val	p.A2294V	ENST00000219905	NM_001164273.1	2294	gCt/gTt																																																																															
B2M	567	MSKCC	GRCh37	15	45007871	45007871	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	94	492	0	ENST00000558401.1:c.320del	p.Leu107CysfsTer6	p.L107Cfs*6	ENST00000558401	NM_004048.2	106	acT/ac																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45371785	45371785	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	25	519	0	ENST00000262160.6:c.1206del	p.Phe402LeufsTer7	p.F402Lfs*7	ENST00000262160	NM_005901.5	402	ttT/tt																																																																															
BCL2	596	MSKCC	GRCh37	18	60985485	60985485	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	117	690	0	ENST00000333681.4:c.415A>G	p.Arg139Gly	p.R139G	ENST00000333681		139	Agg/Ggg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145758	11145758	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1447890611		P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	116	539	0	ENST00000344626.4:c.4120C>T	p.Arg1374Cys	p.R1374C	ENST00000344626	NM_003072.3	1374	Cgc/Tgc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955090	17955090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	111	603	0	ENST00000458235.1:c.137G>T	p.Gly46Val	p.G46V	ENST00000458235	NM_000215.3	46	gGg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223027	36223027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	105	847	0	ENST00000222270.7:c.5656C>T	p.Pro1886Ser	p.P1886S	ENST00000222270	NM_014727.1	1886	Ccc/Tcc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45860625	45860625	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	26	739	0	ENST00000391945.4:c.1382T>C	p.Leu461Pro	p.L461P	ENST00000391945	NM_000400.3	461	cTg/cCg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867755	45867755	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	92	712	0	ENST00000391945.4:c.645del	p.Lys216ArgfsTer32	p.K216Rfs*32	ENST00000391945	NM_000400.3	215	ccC/cc																																																																															
ALK	238	MSKCC	GRCh37	2	29450496	29450496	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	18	714	0	ENST00000389048.3:c.2858A>G	p.Glu953Gly	p.E953G	ENST00000389048	NM_004304.4	953	gAa/gGa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010478	48010478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	30	594	0	ENST00000234420.5:c.106G>A	p.Ala36Thr	p.A36T	ENST00000234420	NM_000179.2	36	Gct/Act																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212286803	212286803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	35	457	0	ENST00000342788.4:c.2893C>T	p.Pro965Ser	p.P965S	ENST00000342788	NM_005235.2	965	Cct/Tct																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713283	30713283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	140	609	0	ENST00000359013.4:c.683C>T	p.Thr228Ile	p.T228I	ENST00000359013	NM_001024847.2	228	aCc/aTc																																																																															
MITF	4286	MSKCC	GRCh37	3	69988262	69988262	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			173	40	426	0	ENST00000352241.4:c.596T>C	p.Phe199Ser	p.F199S	ENST00000352241	NM_198159.2	199	tTt/tCt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244147	153244148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	79	657	0	ENST00000281708.4:c.2009dup	p.Val671SerfsTer23	p.V671Sfs*23	ENST00000281708	NM_033632.3	670	gga/ggGa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046068	180046068	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	41	467	0	ENST00000261937.6:c.2803C>A	p.Leu935Ile	p.L935I	ENST00000261937	NM_182925.4	935	Ctc/Atc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673632	30673632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	23	624	0	ENST00000376406.3:c.3328C>T	p.Arg1110Trp	p.R1110W	ENST00000376406	NM_014641.2	1110	Cgg/Tgg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2058346	2058346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056765-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	41	431	0	ENST00000349721.2:c.1403C>T	p.Ser468Phe	p.S468F	ENST00000349721	NM_003070.3	468	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934578		P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	253	780	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533844	63533844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	161	735	0	ENST00000307078.5:c.1310C>T	p.Thr437Met	p.T437M	ENST00000307078	NM_004655.3	437	aCg/aTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030221	180030221	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143739828		P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	212	767	0	ENST00000261937.6:c.4063G>A	p.Val1355Met	p.V1355M	ENST00000261937	NM_182925.4	1355	Gtg/Atg																																																																															
ATRX	546	MSKCC	GRCh37	X	76888819	76888819	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	163	628	0	ENST00000373344.5:c.5010G>T	p.Gln1670His	p.Q1670H	ENST00000373344	NM_000489.3	1670	caG/caT																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439577	51439577	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	182	528	0	ENST00000262662.1:c.142G>T	p.Gly48Ter	p.G48*	ENST00000262662		48	Gga/Tga																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233243	46233243	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	198	582	0	ENST00000334344.6:c.1462C>T	p.Gln488Ter	p.Q488*	ENST00000334344	NM_152641.2	488	Caa/Taa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729907	41729907	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	196	636	0	ENST00000242208.4:c.622G>T	p.Glu208Ter	p.E208*	ENST00000242208	NM_002192.2	208	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	119	416	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
AKT3	10000	MSKCC	GRCh37	1	244006427	244006428	+	stop_gained,splice_region_variant	Nonsense_Mutation	DNP	CC	CC	AA			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	277	453	0	ENST00000263826.5:c.45_46delinsTT	p.Arg15_Gly16delinsSerTer	p.R15_G16delinsS*	ENST00000263826	NM_005465.4	15	agGGga/agTTga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427914	49427914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	178	717	0	ENST00000301067.7:c.10676C>T	p.Ala3559Val	p.A3559V	ENST00000301067	NM_003482.3	3559	gCt/gTt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911502	32911502	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	207	564	0	ENST00000380152.3:c.3010A>T	p.Ser1004Cys	p.S1004C	ENST00000380152		1004	Agt/Tgt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562951	95562951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	170	631	0	ENST00000343455.3:c.4306G>A	p.Ala1436Thr	p.A1436T	ENST00000343455	NM_177438.2	1436	Gct/Act																																																																															
MGA	23269	MSKCC	GRCh37	15	42028458	42028459	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	195	695	0	ENST00000219905.7:c.3997dup	p.Thr1333AsnfsTer5	p.T1333Nfs*5	ENST00000219905	NM_001164273.1	1332	-/A																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476301	88476301	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	317	588	0	ENST00000360948.2:c.1831G>C	p.Asp611His	p.D611H	ENST00000360948	NM_001012338.2	611	Gac/Cac																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99459916	99459916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	337	586	0	ENST00000268035.6:c.2012G>A	p.Arg671Lys	p.R671K	ENST00000268035	NM_000875.3	671	aGg/aAg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226264	2226264	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	255	836	0	ENST00000326181.6:c.1879-2A>T		p.X627_splice	ENST00000326181	NM_032271.2	627																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	10274134	10274134	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	176	705	0	ENST00000330684.3:c.135C>A	p.Asp45Glu	p.D45E	ENST00000330684	NM_001134407.1	45	gaC/gaA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581226	48581226	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	202	596	0	ENST00000342988.3:c.530A>G	p.His177Arg	p.H177R	ENST00000342988	NM_005359.5	177	cAt/cGt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748605	40748605	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	110	418	0	ENST00000373198.4:c.2911C>A	p.His971Asn	p.H971N	ENST00000373198	NM_133170.3	971	Cat/Aat																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880992	134880992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	356	661	0	ENST00000398015.3:c.1555G>T	p.Gly519Cys	p.G519C	ENST00000398015	NM_004441.4	519	Ggc/Tgc																																																																															
BCL6	604	MSKCC	GRCh37	3	187447633	187447633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			869	261	941	0	ENST00000232014.4:c.560G>T	p.Gly187Val	p.G187V	ENST00000232014	NM_001130845.1	187	gGc/gTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467389	66467389	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	206	714	0	ENST00000273854.3:c.880G>T	p.Gly294Ter	p.G294*	ENST00000273854	NM_004439.5	294	Gga/Tga																																																																															
ALB	213	MSKCC	GRCh37	4	74270054	74270054	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	182	528	0	ENST00000295897.4:c.10G>C	p.Val4Leu	p.V4L	ENST00000295897	NM_000477.5	4	Gta/Cta																																																																															
ALB	213	MSKCC	GRCh37	4	74283978	74283978	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	162	523	0	ENST00000295897.4:c.1602T>G	p.His534Gln	p.H534Q	ENST00000295897	NM_000477.5	534	caT/caG																																																																															
SDHA	6389	MSKCC	GRCh37	5	226155	226155	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	359	581	0	ENST00000264932.6:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000264932	NM_004168.2	205	tAt/tGt																																																																															
HGF	3082	MSKCC	GRCh37	7	81388088	81388088	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	115	329	0	ENST00000222390.5:c.287G>T	p.Cys96Phe	p.C96F	ENST00000222390	NM_000601.4	96	tGc/tTc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894979	101894979	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	343	576	0	ENST00000374994.4:c.532A>T	p.Lys178Ter	p.K178*	ENST00000374994	NM_004612.2	178	Aaa/Taa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922899	44922899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	180	709	0	ENST00000377967.4:c.1760G>A	p.Ser587Asn	p.S587N	ENST00000377967	NM_021140.2	587	aGt/aAt																																																																															
AR	367	MSKCC	GRCh37	X	66765035	66765035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	206	699	0	ENST00000374690.3:c.47C>A	p.Ser16Tyr	p.S16Y	ENST00000374690	NM_000044.3	16	tCc/tAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0061768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	92	474	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NF1	4763	MSKCC	GRCh37	17	29556079	29556079	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs886041347		P-0061768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	22	477	0	ENST00000358273.4:c.2446C>T	p.Arg816Ter	p.R816*	ENST00000358273	NM_001042492.2	816	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106447	27106447	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0061768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	97	876	0	ENST00000324856.7:c.6058A>T	p.Lys2020Ter	p.K2020*	ENST00000324856	NM_006015.4	2020	Aag/Tag																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230459254	230459254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148414368		P-0061768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	71	824	2	ENST00000525115.1:c.1285G>A	p.Val429Met	p.V429M	ENST00000525115		429	Gtg/Atg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647460	23647460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	139	583	0	ENST00000261584.4:c.407G>T	p.Ser136Ile	p.S136I	ENST00000261584	NM_024675.3	136	aGt/aTt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619200	1619200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	76	990	0	ENST00000344749.5:c.1360G>T	p.Gly454Cys	p.G454C	ENST00000344749	NM_001136139.2	454	Ggc/Tgc																																																																															
ATR	545	MSKCC	GRCh37	3	142226912	142226912	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	101	631	0	ENST00000350721.4:c.4892G>T	p.Arg1631Leu	p.R1631L	ENST00000350721	NM_001184.3	1631	cGt/cTt																																																																															
KDR	3791	MSKCC	GRCh37	4	55984903	55984903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	82	610	0	ENST00000263923.4:c.226G>T	p.Val76Leu	p.V76L	ENST00000263923	NM_002253.2	76	Gtg/Ttg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673344	30673344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061768-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			816	146	1177	0	ENST00000376406.3:c.3616G>C	p.Ala1206Pro	p.A1206P	ENST00000376406	NM_014641.2	1206	Gcc/Ccc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0061769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	243	703	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185165600	185165600	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763026193		P-0061769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	249	511	0	ENST00000265026.3:c.875C>T	p.Ala292Val	p.A292V	ENST00000265026	NM_004721.4	292	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0061769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	169	393	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175364	+	frameshift_variant	Frame_Shift_Del	DEL	GAATTTTCTTCAGGAGC	GAATTTTCTTCAGGAGC	-			P-0061769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	228	600	0	ENST00000257430.4:c.4060_4076del	p.Phe1354IlefsTer15	p.F1354Ifs*15	ENST00000257430	NM_000038.5	1353	GAATTTTCTTCAGGAGCg/g																																																																															
NF1	4763	MSKCC	GRCh37	17	29508765	29508765	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	127	467	0	ENST00000358273.4:c.692T>C	p.Phe231Ser	p.F231S	ENST00000358273	NM_001042492.2	231	tTt/tCt																																																																															
TOP1	7150	MSKCC	GRCh37	20	39742731	39742731	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0061769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			835	139	680	0	ENST00000361337.2:c.1574T>A	p.Val525Glu	p.V525E	ENST00000361337	NM_003286.2	525	gTa/gAa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031970	26031970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			961	83	924	0	ENST00000244661.2:c.319G>A	p.Asp107Asn	p.D107N	ENST00000244661	NM_003537.3	107	Gac/Aac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860047	151860047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	149	642	0	ENST00000262189.6:c.10615C>T	p.Leu3539Phe	p.L3539F	ENST00000262189	NM_170606.2	3539	Ctt/Ttt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041442	47041442	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0061769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			793	328	899	0	ENST00000329236.7:c.1551+1G>T		p.X517_splice	ENST00000329236	NM_001204466.1	517																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000606-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	123	119	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266709	198266709	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0000606-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			918	343	351	0	ENST00000335508.6:c.2223G>C	p.Lys741Asn	p.K741N	ENST00000335508	NM_012433.2	741	aaG/aaC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878676	151878676	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0000606-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			552	168	206	0	ENST00000262189.6:c.6269C>G	p.Ser2090Ter	p.S2090*	ENST00000262189	NM_170606.2	2090	tCa/tGa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38273402	38273402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000606-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1098	93	392	0	ENST00000425967.3:c.1933C>G	p.Leu645Val	p.L645V	ENST00000425967	NM_001174067.1	645	Ctg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876659802		P-0000606-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			475	341	437	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244280	5244280	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000606-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			490	269	456	0	ENST00000357368.4:c.1202G>A	p.Trp401Ter	p.W401*	ENST00000357368	NM_002850.3	401	tGg/tAg																																																																															
CIC	23152	MSKCC	GRCh37	19	42794044	42794044	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000606-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			776	290	312	0	ENST00000575354.2:c.1405G>C	p.Glu469Gln	p.E469Q	ENST00000575354	NM_015125.3	469	Gag/Cag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001396-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			555	93	493	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577524	7577524	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001396-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			167	104	352	0	ENST00000269305.4:c.757A>C	p.Thr253Pro	p.T253P	ENST00000269305	NM_001126112.2	253	Acc/Ccc																																																																															
NF1	4763	MSKCC	GRCh37	17	29687586	29687586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001396-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1228	169	795	0	ENST00000358273.4:c.8242G>A	p.Glu2748Lys	p.E2748K	ENST00000358273	NM_001042492.2	2748	Gaa/Aaa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691950	30691950	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0001396-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			313	51	300	0	ENST00000359013.4:c.528del	p.Glu177AsnfsTer11	p.E177Nfs*11	ENST00000359013	NM_001024847.2	176	gAa/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519931		P-0004841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	93	747	0	ENST00000263967.3:c.316G>C	p.Gly106Arg	p.G106R	ENST00000263967	NM_006218.2	106	Ggc/Cgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs876659675		P-0004841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	51	472	0	ENST00000269305.4:c.764T>G	p.Ile255Ser	p.I255S	ENST00000269305	NM_001126112.2	255	aTc/aGc																																																																															
AR	367	MSKCC	GRCh37	X	66905873	66905874	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAG			P-0004841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	36	659	0	ENST00000374690.3:c.1794_1796dup	p.Ser598dup	p.S598dup	ENST00000374690	NM_000044.3	598	gcc/gcCAGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	49	384	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78444612	78444612	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	224	258	0	ENST00000370768.2:c.77G>T	p.Gly26Val	p.G26V	ENST00000370768	NM_003902.3	26	gGa/gTa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972752	25972752	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1354885963		P-0009931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	328	428	0	ENST00000435504.4:c.1673T>C	p.Leu558Pro	p.L558P	ENST00000435504		558	cTt/cCt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138478137	138478137	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	213	303	0	ENST00000289153.2:c.49A>T	p.Ile17Phe	p.I17F	ENST00000289153	NM_006219.2	17	Atc/Ttc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912570	32912570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	329	672	0	ENST00000380152.3:c.4078G>A	p.Asp1360Asn	p.D1360N	ENST00000380152		1360	Gat/Aat																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164859	36164859	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	180	233	0	ENST00000300305.3:c.1016T>G	p.Leu339Arg	p.L339R	ENST00000300305		339	cTg/cGg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105542	27105546	+	stop_gained	Nonsense_Mutation	ONP	AATAT	AATAT	CATAG			P-0009931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	294	403	0	ENST00000324856.7:c.5153_5157delinsCATAG	p.Glu1718_Tyr1719delinsAlaTer	p.E1718_Y1719delinsA*	ENST00000324856	NM_006015.4	1718	gAATAT/gCATAG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	202	527	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0012900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	88	721	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7572929	7572929	+	stop_lost	Nonstop_Mutation	SNP	A	A	T			P-0012900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	588	1067	0	ENST00000269305.4:c.1180T>A	p.Ter394ArgextTer9	p.*394Rext*9	ENST00000269305	NM_001126112.2	394	Tga/Aga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692792	89692792	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs779530981		P-0013339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	43	370	1	ENST00000371953.3:c.276C>A	p.Asp92Glu	p.D92E	ENST00000371953	NM_000314.4	92	gaC/gaA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061102	38061132	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTTGCGGCTCTCAGGGCCGCCCTTGGCGC	TCCTTGCGGCTCTCAGGGCCGCCCTTGGCGC	-			P-0013339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	29	94	0	ENST00000250448.2:c.857_887del	p.Gly286AlafsTer25	p.G286Afs*25	ENST00000250448	NM_004496.3	286	gGCGCCAAGGGCGGCCCTGAGAGCCGCAAGGAc/gc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830389	72830413	+	frameshift_variant	Frame_Shift_Del	DEL	GATGGCTGGTGTGGACGCCGGCTGA	GATGGCTGGTGTGGACGCCGGCTGA	-			P-0013339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	168	786	0	ENST00000268489.5:c.6168_6192del	p.Gln2057ProfsTer36	p.Q2057Pfs*36	ENST00000268489	NM_006885.3	2056	ccTCAGCCGGCGTCCACACCAGCCATC/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	525	468	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	94	566	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733279	40733279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201275244		P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	86	516	0	ENST00000373198.4:c.3527G>A	p.Arg1176His	p.R1176H	ENST00000373198	NM_133170.3	1176	cGt/cAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11168975	11168975	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1329240441		P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	63	685	3	ENST00000344626.4:c.4469C>T	p.Ser1490Leu	p.S1490L	ENST00000344626	NM_003072.3	1490	tCg/tTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528478	157528478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	219	556	0	ENST00000346085.5:c.6203C>T	p.Pro2068Leu	p.P2068L	ENST00000346085	NM_020732.3	2068	cCa/cTa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9786991	9786991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	49	559	0	ENST00000377346.4:c.3022G>A	p.Glu1008Lys	p.E1008K	ENST00000377346	NM_005026.3	1008	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100564	8100564	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1178153797		P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1171	106	736	2	ENST00000346208.3:c.538G>A	p.Glu180Lys	p.E180K	ENST00000346208		180	Gag/Aag																																																																															
TET1	80312	MSKCC	GRCh37	10	70451437	70451437	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	59	710	1	ENST00000373644.4:c.6277G>T	p.Glu2093Ter	p.E2093*	ENST00000373644	NM_030625.2	2093	Gaa/Taa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32893363	32893363	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	353	620	0	ENST00000380152.3:c.217C>G	p.Gln73Glu	p.Q73E	ENST00000380152		73	Cag/Gag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30098278	30098278	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370925513		P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	142	550	0	ENST00000331968.5:c.1694C>T	p.Ser565Leu	p.S565L	ENST00000331968	NM_002742.2	565	tCa/tTa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061575	38061575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	69	303	0	ENST00000250448.2:c.414G>A	p.Met138Ile	p.M138I	ENST00000250448	NM_004496.3	138	atG/atA																																																																															
DICER1	23405	MSKCC	GRCh37	14	95596436	95596436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	133	520	1	ENST00000343455.3:c.532C>T	p.His178Tyr	p.H178Y	ENST00000343455	NM_177438.2	178	Cat/Tat																																																																															
TSC2	7249	MSKCC	GRCh37	16	2124366	2124366	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs549612492		P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	439	845	1	ENST00000219476.3:c.2521G>A	p.Val841Ile	p.V841I	ENST00000219476	NM_000548.3	841	Gtc/Atc																																																																															
CDH1	999	MSKCC	GRCh37	16	68855945	68855946	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTCTGATGTGAA			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	279	587	0	ENST00000261769.5:c.1756_1768dup	p.Asp590ValfsTer2	p.D590Vfs*2	ENST00000261769	NM_004360.3	585	ctg/cTGTCTGATGTGAAtg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341600	89341600	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	76	496	0	ENST00000301030.4:c.7471-1G>C		p.X2491_splice	ENST00000301030	NM_001256183.1	2491																																																																																
ANKRD11	29123	MSKCC	GRCh37	16	89348883	89348883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	444	870	1	ENST00000301030.4:c.4067C>T	p.Ser1356Leu	p.S1356L	ENST00000301030	NM_001256183.1	1356	tCa/tTa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349712	89349712	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	400	739	0	ENST00000301030.4:c.3238C>G	p.Leu1080Val	p.L1080V	ENST00000301030	NM_001256183.1	1080	Ctc/Gtc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029478	16029478	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	38	414	0	ENST00000268712.3:c.1552G>C	p.Glu518Gln	p.E518Q	ENST00000268712	NM_006311.3	518	Gaa/Caa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58678170	58678170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1414	204	899	0	ENST00000305921.3:c.395C>T	p.Ser132Leu	p.S132L	ENST00000305921	NM_003620.3	132	tCg/tTg																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792752	33792752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	118	123	0	ENST00000498907.2:c.569C>T	p.Ser190Leu	p.S190L	ENST00000498907	NM_004364.3	190	tCg/tTg																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140083	50140083	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	132	634	0	ENST00000246792.3:c.342G>C	p.Gln114His	p.Q114H	ENST00000246792	NM_006270.3	114	caG/caC																																																																															
ACVR1	90	MSKCC	GRCh37	2	158622696	158622696	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	50	402	0	ENST00000263640.3:c.803C>G	p.Ser268Ter	p.S268*	ENST00000263640	NM_001105.4	268	tCa/tGa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267518	198267518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	79	359	0	ENST00000335508.6:c.1839G>A	p.Met613Ile	p.M613I	ENST00000335508	NM_012433.2	613	atG/atA																																																																															
CASP8	841	MSKCC	GRCh37	2	202137492	202137492	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	337	627	0	ENST00000358485.4:c.720C>G	p.Phe240Leu	p.F240L	ENST00000358485	NM_001080125.1	240	ttC/ttG																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417883	138417883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	163	571	0	ENST00000289153.2:c.1636C>T	p.Pro546Ser	p.P546S	ENST00000289153	NM_006219.2	546	Ccc/Tcc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665015	138665015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	27	272	1	ENST00000330315.3:c.550G>A	p.Asp184Asn	p.D184N	ENST00000330315	NM_023067.3	184	Gac/Aac																																																																															
TP63	8626	MSKCC	GRCh37	3	189612200	189612200	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	380	527	0	ENST00000264731.3:c.1952C>G	p.Ser651Cys	p.S651C	ENST00000264731	NM_003722.4	651	tCt/tGt																																																																															
KDR	3791	MSKCC	GRCh37	4	55955040	55955040	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1300072747		P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	44	469	0	ENST00000263923.4:c.3505C>T	p.Gln1169Ter	p.Q1169*	ENST00000263923	NM_002253.2	1169	Cag/Tag																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197187	26197187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	258	413	0	ENST00000356476.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000356476		98	Gag/Aag																																																																															
EZH2	2146	MSKCC	GRCh37	7	148543581	148543581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	42	471	0	ENST00000320356.2:c.227C>T	p.Ser76Leu	p.S76L	ENST00000320356	NM_004456.4	76	tCa/tTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151835952	151835952	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	326	529	0	ENST00000262189.6:c.14572G>T	p.Glu4858Ter	p.E4858*	ENST00000262189	NM_170606.2	4858	Gaa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151893033	151893033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	97	401	2	ENST00000262189.6:c.4337G>A	p.Gly1446Glu	p.G1446E	ENST00000262189	NM_170606.2	1446	gGa/gAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132763	152132763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	507	685	1	ENST00000262189.6:c.109C>T	p.Arg37Trp	p.R37W	ENST00000262189	NM_170606.2	37	Cgg/Tgg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371698	55371698	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1269	82	771	1	ENST00000297316.4:c.388C>T	p.Gln130Ter	p.Q130*	ENST00000297316	NM_022454.3	130	Cag/Tag																																																																															
CD274	29126	MSKCC	GRCh37	9	5462858	5462858	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs747598352		P-0014260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	20	249	0	ENST00000381577.3:c.419G>C	p.Arg140Thr	p.R140T	ENST00000381577	NM_014143.3	140	aGa/aCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	87	792	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0015298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	72	550	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391168	89391168	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772463834		P-0015298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	79	673	0	ENST00000336596.2:c.1234G>A	p.Val412Ile	p.V412I	ENST00000336596	NM_005233.5	412	Gtt/Att																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3790512	3790512	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	124	781	1	ENST00000262367.5:c.4021C>T	p.Arg1341Ter	p.R1341*	ENST00000262367	NM_004380.2	1341	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175789	112175789	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	65	455	0	ENST00000257430.4:c.4501del	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1500	Ttt/tt																																																																															
BRAF	673	MSKCC	GRCh37	7	140501350	140501350	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906660		P-0015298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	59	521	0	ENST00000288602.6:c.722C>T	p.Thr241Met	p.T241M	ENST00000288602	NM_004333.4	241	aCg/aTg																																																																															
ATM	472	MSKCC	GRCh37	11	108196143	108196143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs564652222		P-0015298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	119	815	1	ENST00000278616.4:c.6679C>T	p.Arg2227Cys	p.R2227C	ENST00000278616	NM_000051.3	2227	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238978	5238978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	67	586	0	ENST00000357368.4:c.1801G>T	p.Gly601Cys	p.G601C	ENST00000357368	NM_002850.3	601	Ggc/Tgc																																																																															
CALR	811	MSKCC	GRCh37	19	13051469	13051469	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	62	622	0	ENST00000316448.5:c.816+1G>A		p.X272_splice	ENST00000316448	NM_004343.3	272																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106508425	106508425	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754761135		P-0015298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	26	270	1	ENST00000359195.3:c.419G>A	p.Arg140Gln	p.R140Q	ENST00000359195	NM_002649.2	140	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	238	316	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11210212	11210212	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1403372273		P-0015598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	96	397	0	ENST00000361445.4:c.4541G>A	p.Arg1514Gln	p.R1514Q	ENST00000361445	NM_004958.3	1514	cGg/cAg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38274851	38274851	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519898		P-0015598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	5937	376	0	ENST00000425967.3:c.1729A>G	p.Asn577Asp	p.N577D	ENST00000425967	NM_001174067.1	577	Aac/Gac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509822	187509822	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs770217697		P-0015598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	107	176	0	ENST00000441802.2:c.13691A>G	p.Tyr4564Cys	p.Y4564C	ENST00000441802	NM_005245.3	4564	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0016864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	95	341	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	51	230	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730876	40730876	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372862828		P-0016864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	335	424	0	ENST00000373198.4:c.3659G>A	p.Arg1220Gln	p.R1220Q	ENST00000373198	NM_133170.3	1220	cGg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0017479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	5516	470	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
SDHC	6391	MSKCC	GRCh37	1	161293415	161293415	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767802663		P-0017479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	55	395	0	ENST00000367975.2:c.32G>A	p.Arg11His	p.R11H	ENST00000367975	NM_003001.3	11	cGt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426660	49426662	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-	rs1413843050		P-0017479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	111	125	0	ENST00000301067.7:c.11826_11828del	p.Gln3947del	p.Q3947del	ENST00000301067	NM_003482.3	3942	caACAg/cag																																																																															
STK19	8859	MSKCC	GRCh37	6	31940508	31940508	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1339	235	381	0	ENST00000375331.2:c.541G>C	p.Asp181His	p.D181H	ENST00000375331	NM_004197.1	181	Gac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0017589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	695	819	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	199	469	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0017589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	212	238	0				ENST00000310581	NM_198253.2																																																																																	
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0017589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	193	378	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782378	9782378	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200226248		P-0017589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	248	594	1	ENST00000377346.4:c.2311G>A	p.Gly771Ser	p.G771S	ENST00000377346	NM_005026.3	771	Ggc/Agc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528572	89528572	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762601076		P-0017589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	306	377	0	ENST00000336596.2:c.2872G>A	p.Val958Met	p.V958M	ENST00000336596	NM_005233.5	958	Gtg/Atg																																																																															
MITF	4286	MSKCC	GRCh37	3	70008432	70008432	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1195515853		P-0017589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	121	344	0	ENST00000352241.4:c.1022G>A	p.Arg341His	p.R341H	ENST00000352241	NM_198159.2	341	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099957	27099958	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	318	587	0	ENST00000324856.7:c.3837dup	p.Pro1280SerfsTer7	p.P1280Sfs*7	ENST00000324856	NM_006015.4	1279	tat/taTt																																																																															
MGA	23269	MSKCC	GRCh37	15	42035164	42035164	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1345	455	1145	0	ENST00000219905.7:c.5006C>G	p.Pro1669Arg	p.P1669R	ENST00000219905	NM_001164273.1	1669	cCt/cGt																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794891	242794891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	292	599	0	ENST00000334409.5:c.318C>A	p.Phe106Leu	p.F106L	ENST00000334409	NM_005018.2	106	ttC/ttA																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	306	330	2	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0018669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	373	460	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																															
SMO	6608	MSKCC	GRCh37	7	128845101	128845101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201246258		P-0018669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	330	734	2	ENST00000249373.3:c.595C>T	p.Arg199Trp	p.R199W	ENST00000249373	NM_005631.4	199	Cgg/Tgg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038526	47038526	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	278	719	1	ENST00000329236.7:c.457C>T	p.Arg153Ter	p.R153*	ENST00000329236	NM_001204466.1	153	Cga/Tga																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176329	24176329	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	570	692	0	ENST00000263121.7:c.1120C>T	p.Arg374Trp	p.R374W	ENST00000263121	NM_003073.3	374	Cgg/Tgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920446	114920446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	378	414	0	ENST00000543371.1:c.1387del	p.Cys463AlafsTer28	p.C463Afs*28	ENST00000543371	NM_001198531.1	463	Tgc/gc																																																																															
ATR	545	MSKCC	GRCh37	3	142217572	142217572	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	397	550	0	ENST00000350721.4:c.5425T>G	p.Leu1809Val	p.L1809V	ENST00000350721	NM_001184.3	1809	Tta/Gta																																																																															
APC	324	MSKCC	GRCh37	5	112116518	112116519	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATTGGAAT			P-0018669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	108	439	0	ENST00000257430.4:c.566_573dup	p.Glu192TrpfsTer16	p.E192Wfs*16	ENST00000257430	NM_000038.5	188	caa/caATTGGAATa																																																																															
APC	324	MSKCC	GRCh37	5	112137083	112137083	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	T			P-0018669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	236	315	0	ENST00000257430.4:c.834+3A>T		p.X278_splice	ENST00000257430	NM_000038.5	278																																																																																
CSF1R	1436	MSKCC	GRCh37	5	149457698	149457698	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	249	669	0	ENST00000286301.3:c.706T>G	p.Phe236Val	p.F236V	ENST00000286301	NM_005211.3	236	Ttc/Gtc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500945	8500945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	186	497	0	ENST00000356435.5:c.1937C>T	p.Ser646Phe	p.S646F	ENST00000356435		646	tCc/tTc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	250	652	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115872	8115874	+	frameshift_variant	Frame_Shift_Del	DEL	CTC	CTC	T			P-0019537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	255	668	0	ENST00000346208.3:c.1218_1220delinsT	p.Ser407AlafsTer99	p.S407Afs*99	ENST00000346208		406	atCTCg/atTg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40444011	40444012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	199	684	0	ENST00000345506.4:c.308dup	p.Glu104GlyfsTer13	p.E104Gfs*13	ENST00000345506	NM_003152.3	103	ctg/cTtg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117631269	117631269	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1158125322		P-0019577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	144	564	0	ENST00000368508.3:c.6409A>C	p.Ile2137Leu	p.I2137L	ENST00000368508	NM_002944.2	2137	Atc/Ctc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0019902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	282	364	2	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	186	314	0	ENST00000346208.3:c.1275dup	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	742	617	1	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984672	11984672	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0019902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	319	331	0	ENST00000353533.5:c.219-1G>A		p.X73_splice	ENST00000353533	NM_003010.3	73																																																																																
PNRC1	10957	MSKCC	GRCh37	6	89793509	89793509	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs772546197		P-0019902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	331	295	0	ENST00000336032.3:c.578C>A	p.Ala193Asp	p.A193D	ENST00000336032	NM_006813.2	193	gCc/gAc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0020088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	205	686	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635167	87635167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	129	479	2	ENST00000277120.3:c.2219G>A	p.Ser740Asn	p.S740N	ENST00000277120		740	aGc/aAc																																																																															
CDC42	998	MSKCC	GRCh37	1	22405072	22405072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	56	384	0	ENST00000344548.3:c.101C>T	p.Pro34Leu	p.P34L	ENST00000344548	NM_001039802.1	34	cCg/cTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265771	41266375	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACC	GCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACC	-			P-0020088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	78	43	0	ENST00000349496.5:c.13+199_242-70del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
PHOX2B	8929	MSKCC	GRCh37	4	41749442	41749442	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1476963248		P-0020088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	119	436	1	ENST00000226382.2:c.353C>T	p.Ala118Val	p.A118V	ENST00000226382	NM_003924.3	118	gCg/gTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589590	67589604	+	inframe_deletion	In_Frame_Del	DEL	ATATAACACTCAGTT	ATATAACACTCAGTT	-			P-0020088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	208	495	0	ENST00000274335.5:c.1353_1367del	p.Glu451_Phe456delinsAsp	p.E451_F456delinsD	ENST00000274335		451	gaATATAACACTCAGTTt/gat																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467865	66467865	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs939351025		P-0020106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	54	295	0	ENST00000273854.3:c.404G>A	p.Arg135Gln	p.R135Q	ENST00000273854	NM_004439.5	135	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057947	27057948	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	48	567	1	ENST00000324856.7:c.1656dup	p.Gln553ThrfsTer70	p.Q553Tfs*70	ENST00000324856	NM_006015.4	552	tca/tcAa																																																																															
CDH1	999	MSKCC	GRCh37	16	68857335	68857335	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	94	450	0	ENST00000261769.5:c.1971del	p.Leu658Ter	p.L658*	ENST00000261769	NM_004360.3	657	gCc/gc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097706	27097707	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	123	563	0	ENST00000324856.7:c.3296dup	p.Cys1099TrpfsTer6	p.C1099Wfs*6	ENST00000324856	NM_006015.4	1099	tgt/tGgt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851321	156851321	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	104	1090	0	ENST00000524377.1:c.2278A>C	p.Met760Leu	p.M760L	ENST00000524377	NM_002529.3	760	Atg/Ctg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660409	227660409	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	34	704	0	ENST00000305123.5:c.3046C>G	p.Arg1016Gly	p.R1016G	ENST00000305123	NM_005544.2	1016	Cga/Gga																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0021318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	767	513	0				ENST00000310581	NM_198253.2																																																																																	
ERBB2	2064	MSKCC	GRCh37	17	37881002	37881003	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTCCCCA			P-0021318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	468	946	0	ENST00000269571.5:c.2332_2340dup	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	-/GGCTCCCCA																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438143	56438143	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0021318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	296	1027	0	ENST00000407977.2:c.849+1G>T		p.X283_splice	ENST00000407977		283																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120484331	120484331	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	53	509	0	ENST00000256646.2:c.2799C>G	p.Phe933Leu	p.F933L	ENST00000256646	NM_024408.3	933	ttC/ttG																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482806	67482806	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	226	790	0	ENST00000327367.4:c.1210T>G	p.Leu404Val	p.L404V	ENST00000327367	NM_005902.3	404	Ttg/Gtg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992390	72992390	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs754146286		P-0021318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	141	1143	0	ENST00000268489.5:c.1655C>G	p.Ser552Cys	p.S552C	ENST00000268489	NM_006885.3	552	tCt/tGt																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22153321	22153321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	71	750	1	ENST00000215832.6:c.589G>A	p.Glu197Lys	p.E197K	ENST00000215832	NM_002745.4	197	Gaa/Aaa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117377	115117378	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0021792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	51	522	0	ENST00000257566.3:c.795_796dup	p.Ser266IlefsTer17	p.S266Ifs*17	ENST00000257566	NM_016569.3	266	agt/aTAgt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099579	157099579	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	10	138	0	ENST00000346085.5:c.521del	p.Pro174ArgfsTer6	p.P174Rfs*6	ENST00000346085	NM_020732.3	172	gaC/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0023616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	138	849	5	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0023616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	32	636	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0023616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	70	525	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0023616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	41	451	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730831	40730831	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372700928		P-0023616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	199	1032	2	ENST00000373198.4:c.3704G>A	p.Arg1235His	p.R1235H	ENST00000373198	NM_133170.3	1235	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591955	48591972	+	inframe_deletion	In_Frame_Del	DEL	CAGAAGCCATTGAGAGAG	CAGAAGCCATTGAGAGAG	-			P-0023616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	23	529	2	ENST00000342988.3:c.1120_1137del	p.Glu374_Ala379del	p.E374_A379del	ENST00000342988	NM_005359.5	373	aCAGAAGCCATTGAGAGAGca/aca																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72881616	72881616	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	93	665	0	ENST00000325599.8:c.503T>G	p.Val168Gly	p.V168G	ENST00000325599	NM_018130.2	168	gTt/gGt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	232	622	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0024150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	157	770	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	69	399	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	429	911	1	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0024150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	131	622	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40864888	40864888	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	45	710	0	ENST00000373198.4:c.2380T>C	p.Tyr794His	p.Y794H	ENST00000373198	NM_133170.3	794	Tat/Cat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	40	346	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0024425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	160	482	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0024425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	18	399	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120085	70120085	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	24	32	1	ENST00000245479.2:c.1087C>T	p.Gln363Ter	p.Q363*	ENST00000245479	NM_000346.3	363	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112174262	112174262	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs786202995		P-0024425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	51	346	0	ENST00000257430.4:c.2971G>T	p.Glu991Ter	p.E991*	ENST00000257430	NM_000038.5	991	Gaa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250906	153250906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	66	330	1	ENST00000281708.4:c.1154C>T	p.Thr385Ile	p.T385I	ENST00000281708	NM_033632.3	385	aCa/aTa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332465	153332468	+	frameshift_variant	Frame_Shift_Del	DEL	TTTG	TTTG	-			P-0024425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	61	287	0	ENST00000281708.4:c.488_491del	p.Thr163LysfsTer5	p.T163Kfs*5	ENST00000281708	NM_033632.3	163	aCAAAa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112176027	112176030	+	frameshift_variant	Frame_Shift_Del	DEL	TTAT	TTAT	-			P-0024425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	66	310	0	ENST00000257430.4:c.4738_4741del	p.Ile1580LeufsTer69	p.I1580Lfs*69	ENST00000257430	NM_000038.5	1579	aTTATt/at																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0024478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	25	585	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	95	311	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925358	114925358	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	64	543	0	ENST00000543371.1:c.1436G>C	p.Cys479Ser	p.C479S	ENST00000543371	NM_001198531.1	479	tGc/tCc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944765	71944765	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	312	679	2	ENST00000298229.2:c.2190del	p.Ser731ProfsTer27	p.S731Pfs*27	ENST00000298229	NM_001567.3	730	aCc/ac																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133923	41133923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	26	328	0	ENST00000379561.5:c.1705C>T	p.Pro569Ser	p.P569S	ENST00000379561	NM_002015.3	569	Ccc/Tcc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40462667	40462667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	285	446	2	ENST00000345506.4:c.2365G>A	p.Ala789Thr	p.A789T	ENST00000345506	NM_003152.3	789	Gcc/Acc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41219624	41219624	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs80358053		P-0025479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	297	458	1	ENST00000357654.3:c.5074+1G>A		p.X1692_splice	ENST00000357654	NM_007294.3	1692																																																																																
BRCA1	672	MSKCC	GRCh37	17	41223192	41223193	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	81	585	0	ENST00000357654.3:c.4738dup	p.Ser1580PhefsTer2	p.S1580Ffs*2	ENST00000357654	NM_007294.3	1580	tct/tTct																																																																															
MET	4233	MSKCC	GRCh37	7	116418870	116418870	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	168	399	0	ENST00000397752.3:c.3381G>T	p.Glu1127Asp	p.E1127D	ENST00000397752	NM_000245.2	1127	gaG/gaT																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519816		P-0027064-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			634	515	455	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589138	67589138	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519757		P-0027064-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			154	53	221	0	ENST00000274335.5:c.1126G>A	p.Gly376Arg	p.G376R	ENST00000274335		376	Gga/Aga																																																																															
PPARG	5468	MSKCC	GRCh37	3	12447561	12447561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027064-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			563	191	415	0	ENST00000287820.6:c.800G>A	p.Gly267Glu	p.G267E	ENST00000287820	NM_015869.4	267	gGa/gAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247355	153247357	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0027064-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			296	98	196	0	ENST00000281708.4:c.1445_1447del	p.Thr482_Leu483delinsIle	p.T482_L483delinsI	ENST00000281708	NM_033632.3	482	aCTCtt/att																																																																															
ROS1	6098	MSKCC	GRCh37	6	117629997	117629997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027064-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			343	98	330	0	ENST00000368508.3:c.6529G>A	p.Gly2177Arg	p.G2177R	ENST00000368508	NM_002944.2	2177	Gga/Aga																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205490	38205490	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776197580		P-0027064-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			771	261	650	0	ENST00000317025.8:c.200C>T	p.Pro67Leu	p.P67L	ENST00000317025	NM_023034.1	67	cCt/cTt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851537	63851537	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027064-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			537	208	413	0	ENST00000279873.7:c.2315T>C	p.Ile772Thr	p.I772T	ENST00000279873	NM_032199.2	772	aTc/aCc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95596436	95596436	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027064-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			281	31	314	0	ENST00000343455.3:c.532C>G	p.His178Asp	p.H178D	ENST00000343455	NM_177438.2	178	Cat/Gat																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354072	15354072	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027064-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			585	222	471	0	ENST00000263377.2:c.2808G>C	p.Gln936His	p.Q936H	ENST00000263377	NM_058243.2	936	caG/caC																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180602	56180743	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGAGCCACGTGTGAGAAGAGCAATTACAATCTCTTCATTGAATGGATGGCAGGTATGTTAATGTTTTAAATTACAAAATAGTAGTACGTGGATTTAACTTTCTGCAATTTAGGAAAAACCAGTTTAATTAAAATTTATTTCT	GGAGCCACGTGTGAGAAGAGCAATTACAATCTCTTCATTGAATGGATGGCAGGTATGTTAATGTTTTAAATTACAAAATAGTAGTACGTGGATTTAACTTTCTGCAATTTAGGAAAAACCAGTTTAATTAAAATTTATTTCT	-			P-0027064-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			291	26	272	0	ENST00000399503.3:c.3931_3982+90del		p.X1311_splice	ENST00000399503	NM_005921.1	1311																																																																																
PREX2	80243	MSKCC	GRCh37	8	69046317	69046317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027064-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			454	128	361	0	ENST00000288368.4:c.3790G>A	p.Asp1264Asn	p.D1264N	ENST00000288368	NM_024870.2	1264	Gac/Aac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916924	178916924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225060		P-0028283-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			250	210	527	1	ENST00000263967.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000263967	NM_006218.2	104	cCa/cTa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43738607	43738608	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0028283-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			185	134	496	0	ENST00000382044.4:c.3017_3018del	p.Glu1006ValfsTer13	p.E1006Vfs*13	ENST00000382044	NM_001141980.1	1006	gAG/g																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933281	39933281	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028283-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			623	127	668	0	ENST00000378444.4:c.1318C>G	p.Pro440Ala	p.P440A	ENST00000378444	NM_001123385.1	440	Cca/Gca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	185	566	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126342	5126342	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746602942		P-0031231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	115	361	0	ENST00000381652.3:c.3187C>T	p.Arg1063Cys	p.R1063C	ENST00000381652	NM_004972.3	1063	Cgt/Tgt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852095	63852095	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	231	702	0	ENST00000279873.7:c.2873C>G	p.Ser958Ter	p.S958*	ENST00000279873	NM_032199.2	958	tCa/tGa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912525	32912525	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	637	521	1	ENST00000380152.3:c.4033del	p.Asp1345IlefsTer29	p.D1345Ifs*29	ENST00000380152		1345	Gat/at																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343642	343642	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	379	890	2	ENST00000262320.3:c.2032C>A	p.Gln678Lys	p.Q678K	ENST00000262320	NM_003502.3	678	Cag/Aag																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14028066	14028066	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	168	441	0	ENST00000311895.7:c.1120G>C	p.Val374Leu	p.V374L	ENST00000311895	NM_005236.2	374	Gtc/Ctc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753123	42753123	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	286	622	0	ENST00000222329.4:c.1141C>G	p.Pro381Ala	p.P381A	ENST00000222329	NM_006494.2	381	Ccg/Gcg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38996937	38996937	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	267	591	0	ENST00000357387.3:c.440T>G	p.Leu147Arg	p.L147R	ENST00000357387	NM_152756.3	147	cTt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	12	539	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs876660254		P-0031582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	19	606	0	ENST00000269305.4:c.568C>A	p.Pro190Thr	p.P190T	ENST00000269305	NM_001126112.2	190	Cct/Act																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45649954	45649954	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs186459476		P-0031582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	35	551	1	ENST00000407780.3:c.881C>T	p.Pro294Leu	p.P294L	ENST00000407780	NM_001283052.1	294	cCg/cTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925570	114925570	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	228	654	0	ENST00000543371.1:c.1648C>G	p.Leu550Val	p.L550V	ENST00000543371	NM_001198531.1	550	Ctc/Gtc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661797	227661798	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	19	695	0	ENST00000305123.5:c.1657dup	p.Glu553GlyfsTer58	p.E553Gfs*58	ENST00000305123	NM_005544.2	553	gag/gGag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974768	21974788	+	protein_altering_variant	In_Frame_Del	DEL	GCGGCCGTGGCCAGCCAGTCA	GCGGCCGTGGCCAGCCAGTCA	CCG			P-0031582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	106	258	2	ENST00000304494.5:c.39_59delinsCGG	p.Asp14_Ala20delinsGly	p.D14_A20delinsG	ENST00000304494	NM_000077.4	13	gcTGACTGGCTGGCCACGGCCGCg/gcCGGg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0031811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	60	586	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0031811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	70	504	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440757	56440757	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774211426		P-0031811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	178	608	0	ENST00000407977.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000407977		154	cCg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385120	41385120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	94	787	1	ENST00000373198.4:c.841G>A	p.Ala281Thr	p.A281T	ENST00000373198	NM_133170.3	281	Gcg/Acg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	176	332	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971115	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTCGGGTGAGAGTGGCG	GGGTCGGGTGAGAGTGGCG	-	rs730881674		P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	34	364	0	ENST00000304494.5:c.225_243del	p.Ala76CysfsTer64	p.A76Cfs*64	ENST00000304494	NM_000077.4	75	ccCGCCACTCTCACCCGACCC/cc																																																																															
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	122	293	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660045		P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	60	330	0	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112164585	112164585	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs398123116		P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	115	262	0	ENST00000257430.4:c.1659G>A	p.Trp553Ter	p.W553*	ENST00000257430	NM_000038.5	553	tgG/tgA																																																																															
HGF	3082	MSKCC	GRCh37	7	81350062	81350062	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs759145490		P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	42	283	0	ENST00000222390.5:c.1270C>T	p.Arg424Cys	p.R424C	ENST00000222390	NM_000601.4	424	Cgt/Tgt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67569301	67569301	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	83	331	0	ENST00000274335.5:c.418G>T	p.Glu140Ter	p.E140*	ENST00000274335		140	Gaa/Taa																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631153	69631153	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	124	432	0	ENST00000334134.2:c.259G>T	p.Ala87Ser	p.A87S	ENST00000334134	NM_005247.2	87	Gcc/Tcc																																																																															
ATM	472	MSKCC	GRCh37	11	108119669	108119669	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	28	122	0	ENST00000278616.4:c.1075G>T	p.Glu359Ter	p.E359*	ENST00000278616	NM_000051.3	359	Gaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108175490	108175490	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	188	341	0	ENST00000278616.4:c.5585T>C	p.Leu1862Pro	p.L1862P	ENST00000278616	NM_000051.3	1862	cTt/cCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576663	7577000	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAATATATATTATGGTATAAGTTGGTGTTCTGAAGTTAGTTAGCTACAACCAGGAGCCATTGTCTTTGAGGCATCACTGCCCCCTGATGGCAAATGCCCCAATTGCAGGTAAAACAGTCAAGAAGAAAACGGCATTTTGAGTGTTAGACTGGAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCCTTGGTCTCCTCCACCGCTT	AAATATATATTATGGTATAAGTTGGTGTTCTGAAGTTAGTTAGCTACAACCAGGAGCCATTGTCTTTGAGGCATCACTGCCCCCTGATGGCAAATGCCCCAATTGCAGGTAAAACAGTCAAGAAGAAAACGGCATTTTGAGTGTTAGACTGGAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCCTTGGTCTCCTCCACCGCTT	-			P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	122	385	0	ENST00000269305.4:c.919+19_993+190del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
ROS1	6098	MSKCC	GRCh37	6	117665336	117665336	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1404057865		P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	169	402	0	ENST00000368508.3:c.4411G>A	p.Ala1471Thr	p.A1471T	ENST00000368508	NM_002944.2	1471	Gcc/Acc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0032477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	93	390	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0032477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	153	718	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
ATRX	546	MSKCC	GRCh37	X	76918987	76918987	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	53	525	0	ENST00000373344.5:c.4004G>C	p.Arg1335Thr	p.R1335T	ENST00000373344	NM_000489.3	1335	aGa/aCa																																																																															
APC	324	MSKCC	GRCh37	5	112173624	112173625	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	22	307	0	ENST00000257430.4:c.2336dup	p.Leu779PhefsTer9	p.L779Ffs*9	ENST00000257430	NM_000038.5	778	aat/aaTt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911133	32911133	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	24	372	0	ENST00000380152.3:c.2641G>C	p.Glu881Gln	p.E881Q	ENST00000380152		881	Gaa/Caa																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045670	26045670	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	58	330	0	ENST00000540144.1:c.32C>G	p.Ser11Cys	p.S11C	ENST00000540144	NM_003531.2	11	tCt/tGt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373791	118373791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	135	369	0	ENST00000534358.1:c.7184C>T	p.Ser2395Phe	p.S2395F	ENST00000534358	NM_005933.3	2395	tCt/tTt																																																																															
TOP1	7150	MSKCC	GRCh37	20	39713178	39713178	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs957960003		P-0034327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	112	303	1	ENST00000361337.2:c.584C>T	p.Pro195Leu	p.P195L	ENST00000361337	NM_003286.2	195	cCg/cTg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52696240	52696240	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757924256		P-0034327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	193	812	1	ENST00000394830.3:c.437G>A	p.Arg146Gln	p.R146Q	ENST00000394830	NM_018313.4	146	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0036019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	13	307	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231773	36231773	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	826	582	0	ENST00000300305.3:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000300305		204	cGa/cAa																																																																															
CDH1	999	MSKCC	GRCh37	16	68857311	68857312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0036731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	158	324	0	ENST00000261769.5:c.1947_1948insTT	p.Ile650LeufsTer4	p.I650Lfs*4	ENST00000261769	NM_004360.3	649	tct/tcTTt																																																																															
APC	324	MSKCC	GRCh37	5	112174734	112174734	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	137	268	0	ENST00000257430.4:c.3443C>G	p.Ser1148Cys	p.S1148C	ENST00000257430	NM_000038.5	1148	tCt/tGt																																																																															
ATM	472	MSKCC	GRCh37	11	108151830	108151854	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGCTTTGTTTGCCCTGTGTAAAT	CAGGCTTTGTTTGCCCTGTGTAAAT	-			P-0036972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	55	459	0	ENST00000278616.4:c.3512_3536del	p.Gln1171LeufsTer2	p.Q1171Lfs*2	ENST00000278616	NM_000051.3	1171	CAGGCTTTGTTTGCCCTGTGTAAATct/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0037026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	607	661	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0037026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	115	416	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575068	48575068	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	131	445	0	ENST00000342988.3:c.262A>T	p.Lys88Ter	p.K88*	ENST00000342988	NM_005359.5	88	Aaa/Taa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717777	89717777	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0037026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	94	366	0	ENST00000371953.3:c.801+1G>C		p.X267_splice	ENST00000371953	NM_000314.4	267																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114710544	114710545	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	171	390	0	ENST00000543371.1:c.30dup	p.Asp11Ter	p.D11*	ENST00000543371	NM_001198531.1	10	gat/gaTt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022687	12022687	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1047383225		P-0037026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	223	487	0	ENST00000396373.4:c.793G>A	p.Val265Met	p.V265M	ENST00000396373	NM_001987.4	265	Gtg/Atg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482425	56482425	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	112	621	0	ENST00000267101.3:c.973G>C	p.Gly325Arg	p.G325R	ENST00000267101	NM_001982.3	325	Gga/Cga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061176	38061176	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	166	250	0	ENST00000250448.2:c.813G>T	p.Gln271His	p.Q271H	ENST00000250448	NM_004496.3	271	caG/caT																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252956	36252964	+	inframe_deletion	In_Frame_Del	DEL	TGCCAGCCA	TGCCAGCCA	-			P-0037026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	43	421	0	ENST00000300305.3:c.398_406del	p.Met133_Gly135del	p.M133_G135del	ENST00000300305		133	aTGGCTGGCAat/aat																																																																															
IDH1	3417	MSKCC	GRCh37	2	209101835	209101838	+	missense_variant	Missense_Mutation	ONP	AGTT	AGTT	CGTG			P-0037026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	72	637	0	ENST00000345146.2:c.1210_1213delinsCACG	p.Asn404_Leu405delinsHisVal	p.N404_L405delinsHV	ENST00000345146	NM_005896.2	404	AACTtg/CACGtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	71	522	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0037066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	31	315	2	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912660		P-0037066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	283	607	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																															
APC	324	MSKCC	GRCh37	5	112175221	112175221	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	101	263	0	ENST00000257430.4:c.3930del	p.Ile1311LeufsTer10	p.I1311Lfs*10	ENST00000257430	NM_000038.5	1310	aaG/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427531	49427531	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780464972		P-0037066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	67	563	2	ENST00000301067.7:c.10957G>A	p.Gly3653Arg	p.G3653R	ENST00000301067	NM_003482.3	3653	Gga/Aga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912183	114912183	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	182	518	0	ENST00000543371.1:c.1253C>G	p.Ser418Cys	p.S418C	ENST00000543371	NM_001198531.1	418	tCc/tGc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148507475	148507475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	81	457	0	ENST00000320356.2:c.1979G>T	p.Gly660Val	p.G660V	ENST00000320356	NM_004456.4	660	gGg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151841899	151841899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773125481		P-0037066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	71	423	1	ENST00000262189.6:c.14242G>A	p.Ala4748Thr	p.A4748T	ENST00000262189	NM_170606.2	4748	Gca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	313	610	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0037077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	141	449	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175891	112175891	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	95	290	0	ENST00000257430.4:c.4602del	p.Asn1535MetfsTer30	p.N1535Mfs*30	ENST00000257430	NM_000038.5	1534	Ggg/gg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368213	45368213	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	292	416	0	ENST00000262160.6:c.1389C>A	p.Cys463Ter	p.C463*	ENST00000262160	NM_005901.5	463	tgC/tgA																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67358656	67358657	+	missense_variant	Missense_Mutation	DNP	TC	TC	AT			P-0037077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	251	486	0	ENST00000327367.4:c.164_165delinsAT	p.Ile55Asn	p.I55N	ENST00000327367	NM_005902.3	55	aTC/aAT																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022697	31022697	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	181	614	1	ENST00000375687.4:c.2182G>T	p.Glu728Ter	p.E728*	ENST00000375687	NM_015338.5	728	Gaa/Taa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259232	89259232	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	151	535	0	ENST00000336596.2:c.376G>T	p.Glu126Ter	p.E126*	ENST00000336596	NM_005233.5	126	Gag/Tag																																																																															
ABL1	25	MSKCC	GRCh37	9	133710843	133710843	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	90	243	0	ENST00000318560.5:c.10A>G	p.Ile4Val	p.I4V	ENST00000318560	NM_005157.4	4	Atc/Gtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	49	463	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs786201838		P-0037192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	56	594	1	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584605	48584606	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0037192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	31	430	0	ENST00000342988.3:c.779dup	p.Tyr260Ter	p.Y260*	ENST00000342988	NM_005359.5	260	tac/tAac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860276	151860276	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	41	570	0	ENST00000262189.6:c.10386del	p.Phe3462LeufsTer5	p.F3462Lfs*5	ENST00000262189	NM_170606.2	3462	ttT/tt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0037199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	19	470	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55228032	55229054	+	splice_donor_variant,intron_variant	Splice_Site	DEL	GTAAGTCACCGCTTTCTGTTTAGTTTATGGAGTTGGTTCTAATGGGTCCTTTATTTGTATTTAGAATATTGAAGGGCTATTCCCATTTAAATTACTTTTTTCAGTTCCTTAAGAAGCAAATTAAAATCTTAAGATTCCTAACTGTGAAATTACCATGTGAATTCCATTAAAACTTTTTCCAGATCATTACCATTCAATGGGATGAATTTACCCTGAGGTTTAGGCTACCAATTATTTGTAATGTAAGTAACTAAATTTAGTATTAGTTATATTACCTTTTAGTTGTAGGTCACTCTCTGCTCATTTCAGCCTGTAAAGACTACAGCTACACACATACACACACAGAGGAATGGAATGAGCACTTTACATCAACACTTCCTGTTCTGGCTCTAGAGCCTCAGCTTTTGAAGCTGGTGAGAGCCTGGCCTGTGCTGGGCCTTGGCCACGGGCAGCGTCAGCTTTGAGTCAAGTGCTGGTCTGGCCTCCCTAGCTTTGAGCCTCTGTCAATTCCCTTAATCTGTTTAGGCTTTGGCTTCCTCATCCATAGAATGGAGATATGAATGATTCCTACGCCGTAGTGCTTTGAGAGAATTCAGTGAAATTCCTGTGTGTAAAACCCTTCCATGGTGCCTAGCACACAGCACACAGCCAATGGCCCAATGGCTCCTATCAGCTGTGGGATTTGTCATCAGAACACCACCAGCTCTGCTCCAGGCTGCCCTGGGTACCATCAAAACACACCCTGTGCCCAGCAGCACCTGCTCCTCTGCACACCTGGTTCCTTCAGCAGGGGCAGTGGCCGTGGGAGCACAGAAAACATGGAGTCCCATCTGGTTTAATTGATGCCATTGCCAAAGGGGAGGACTCACGGCACCCCCTCTCGGGTGCCAGGGTGCCTGGCTCCCACCAGGAGGAAGACCTGTCCTCCACTGTCAGGCACATTTCAGTCTTCCCAGCAGCCAGCACAACTACTTTGTCCTTCCAGTCACGGTCGGCCTCTGGGAAGCCCAGTCTGTGTCCTCC	GTAAGTCACCGCTTTCTGTTTAGTTTATGGAGTTGGTTCTAATGGGTCCTTTATTTGTATTTAGAATATTGAAGGGCTATTCCCATTTAAATTACTTTTTTCAGTTCCTTAAGAAGCAAATTAAAATCTTAAGATTCCTAACTGTGAAATTACCATGTGAATTCCATTAAAACTTTTTCCAGATCATTACCATTCAATGGGATGAATTTACCCTGAGGTTTAGGCTACCAATTATTTGTAATGTAAGTAACTAAATTTAGTATTAGTTATATTACCTTTTAGTTGTAGGTCACTCTCTGCTCATTTCAGCCTGTAAAGACTACAGCTACACACATACACACACAGAGGAATGGAATGAGCACTTTACATCAACACTTCCTGTTCTGGCTCTAGAGCCTCAGCTTTTGAAGCTGGTGAGAGCCTGGCCTGTGCTGGGCCTTGGCCACGGGCAGCGTCAGCTTTGAGTCAAGTGCTGGTCTGGCCTCCCTAGCTTTGAGCCTCTGTCAATTCCCTTAATCTGTTTAGGCTTTGGCTTCCTCATCCATAGAATGGAGATATGAATGATTCCTACGCCGTAGTGCTTTGAGAGAATTCAGTGAAATTCCTGTGTGTAAAACCCTTCCATGGTGCCTAGCACACAGCACACAGCCAATGGCCCAATGGCTCCTATCAGCTGTGGGATTTGTCATCAGAACACCACCAGCTCTGCTCCAGGCTGCCCTGGGTACCATCAAAACACACCCTGTGCCCAGCAGCACCTGCTCCTCTGCACACCTGGTTCCTTCAGCAGGGGCAGTGGCCGTGGGAGCACAGAAAACATGGAGTCCCATCTGGTTTAATTGATGCCATTGCCAAAGGGGAGGACTCACGGCACCCCCTCTCGGGTGCCAGGGTGCCTGGCTCCCACCAGGAGGAAGACCTGTCCTCCACTGTCAGGCACATTTCAGTCTTCCCAGCAGCCAGCACAACTACTTTGTCCTTCCAGTCACGGTCGGCCTCTGGGAAGCCCAGTCTGTGTCCTCC	-			P-0037199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	10	229	0	ENST00000275493.2:c.1498+1_1499-138del		p.X500_splice	ENST00000275493	NM_005228.3	500																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	74	363	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	90	635	2	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	74	510	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	83	610	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	197	459	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
RARA	5914	MSKCC	GRCh37	17	38511575	38511575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866375031		P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	100	637	0	ENST00000254066.5:c.1073C>T	p.Ala358Val	p.A358V	ENST00000254066	NM_000964.3	358	gCg/gTg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	90	530	8	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932085	39932085	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	138	914	1	ENST00000378444.4:c.2514del	p.Lys839SerfsTer17	p.K839Sfs*17	ENST00000378444	NM_001123385.1	838	ccC/cc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346158	89346158	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	25	313	1	ENST00000301030.4:c.6792del	p.Ala2265ProfsTer72	p.A2265Pfs*72	ENST00000301030	NM_001256183.1	2264	ccC/cc																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156719	20156719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	101	507	0	ENST00000379607.5:c.38G>A	p.Arg13His	p.R13H	ENST00000379607	NM_001412.3	13	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25368433	25368434	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	72	436	0	ENST00000256078.4:c.511dup	p.Ile171AsnfsTer14	p.I171Nfs*14	ENST00000256078	NM_033360.2	171	atc/aAtc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36989307	36989307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	91	553	0	ENST00000354822.5:c.28C>T	p.Arg10Trp	p.R10W	ENST00000354822	NM_001079668.2	10	Cgg/Tgg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2189768	2189768	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1479024523		P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	124	772	0	ENST00000398665.3:c.238C>T	p.Arg80Cys	p.R80C	ENST00000398665	NM_032482.2	80	Cgt/Tgt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992720	68992720	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182978151		P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	195	644	0	ENST00000288368.4:c.1685G>A	p.Arg562His	p.R562H	ENST00000288368	NM_024870.2	562	cGt/cAt																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200877	67200877	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	82	755	1	ENST00000312629.5:c.870del	p.Tyr291ThrfsTer14	p.Y291Tfs*14	ENST00000312629	NM_003952.2	289	Ccc/cc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874013	151874013	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1248944002		P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	61	669	1	ENST00000262189.6:c.8525del	p.Asn2842MetfsTer21	p.N2842Mfs*21	ENST00000262189	NM_170606.2	2842	aAt/at																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041391	47041391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	104	762	0	ENST00000329236.7:c.1501G>A	p.Gly501Ser	p.G501S	ENST00000329236	NM_001204466.1	501	Ggc/Agc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467922	50467922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	77	515	0	ENST00000331340.3:c.1157G>A	p.Arg386His	p.R386H	ENST00000331340	NM_006060.4	386	cGc/cAc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256497	115256497	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	137	648	0	ENST00000369535.4:c.214A>G	p.Met72Val	p.M72V	ENST00000369535	NM_002524.4	72	Atg/Gtg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711887	89711888	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	92	426	2	ENST00000371953.3:c.506_507del	p.Pro169GlnfsTer10	p.P169Qfs*10	ENST00000371953	NM_000314.4	169	CCc/c																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937431	32937431	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80359052		P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	104	570	0	ENST00000380152.3:c.8092G>A	p.Ala2698Thr	p.A2698T	ENST00000380152		2698	Gca/Aca																																																																															
B2M	567	MSKCC	GRCh37	15	45007845	45007846	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	88	571	0	ENST00000558401.1:c.293_294del	p.Tyr98CysfsTer16	p.Y98Cfs*16	ENST00000558401	NM_004048.2	98	TAt/t																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822355	72822355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	139	944	0	ENST00000268489.5:c.9820G>A	p.Ala3274Thr	p.A3274T	ENST00000268489	NM_006885.3	3274	Gcc/Acc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351436	89351436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	66	676	0	ENST00000301030.4:c.1514C>T	p.Ser505Phe	p.S505F	ENST00000301030	NM_001256183.1	505	tCc/tTc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40483531	40483532	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	72	456	0	ENST00000264657.5:c.1067_1068del	p.Pro356ArgfsTer7	p.P356Rfs*7	ENST00000264657	NM_139276.2	356	cCT/c																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39584320	39584320	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	43	212	1	ENST00000262039.4:c.985G>A	p.Ala329Thr	p.A329T	ENST00000262039	NM_002647.2	329	Gcc/Acc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47639587	47639588	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	57	312	0	ENST00000233146.2:c.687dup	p.Ala230SerfsTer2	p.A230Sfs*2	ENST00000233146	NM_000251.2	227	aga/agAa																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128044416	128044416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	147	773	2	ENST00000285398.2:c.1205G>A	p.Gly402Asp	p.G402D	ENST00000285398	NM_000122.1	402	gGc/gAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790046	40790046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	129	646	0	ENST00000373198.4:c.2685G>T	p.Gln895His	p.Q895H	ENST00000373198	NM_133170.3	895	caG/caT																																																																															
GNAS	2778	MSKCC	GRCh37	20	57480498	57480498	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137854532		P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	114	409	1	ENST00000371085.3:c.493C>T	p.Arg165Cys	p.R165C	ENST00000371085	NM_000516.4	165	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112177785	112177785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	33	314	0	ENST00000257430.4:c.6494C>T	p.Pro2165Leu	p.P2165L	ENST00000257430	NM_000038.5	2165	cCa/cTa																																																																															
LYN	4067	MSKCC	GRCh37	8	56859023	56859023	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	96	448	0	ENST00000519728.1:c.149T>C	p.Leu50Pro	p.L50P	ENST00000519728	NM_002350.3	50	cTt/cCt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104585	69104585	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	132	770	0	ENST00000288368.4:c.4429A>G	p.Asn1477Asp	p.N1477D	ENST00000288368	NM_024870.2	1477	Aac/Gac																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87482341	87482341	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	102	615	0	ENST00000277120.3:c.1628A>G	p.Asp543Gly	p.D543G	ENST00000277120		543	gAc/gGc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942717	44942717	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	74	475	1	ENST00000377967.4:c.3297G>T	p.Gln1099His	p.Q1099H	ENST00000377967	NM_021140.2	1099	caG/caT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410721	63410721	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765543269		P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	115	779	2	ENST00000330258.3:c.2446C>T	p.Arg816Trp	p.R816W	ENST00000330258	NM_152424.3	816	Cgg/Tgg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412395	63412395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	77	938	0	ENST00000330258.3:c.772C>T	p.Pro258Ser	p.P258S	ENST00000330258	NM_152424.3	258	Cca/Tca																																																																															
MED12	9968	MSKCC	GRCh37	X	70354619	70354619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	145	703	1	ENST00000374080.3:c.4784C>T	p.Ala1595Val	p.A1595V	ENST00000374080		1595	gCt/gTt																																																																															
XIAP	331	MSKCC	GRCh37	X	123026585	123026585	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	79	411	2	ENST00000355640.3:c.1061G>T	p.Arg354Ile	p.R354I	ENST00000355640		354	aGa/aTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0037270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	126	322	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0037270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	121	317	0	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38061239	38061241	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0037270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	168	444	0	ENST00000250448.2:c.748_750del	p.Ser250del	p.S250del	ENST00000250448	NM_004496.3	250	TCC/-																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149433884	149433884	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0037270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	194	543	0	ENST00000286301.3:c.2763+1del		p.X921_splice	ENST00000286301	NM_005211.3	921																																																																																
ATM	472	MSKCC	GRCh37	11	108155105	108155107	+	missense_variant	Missense_Mutation	ONP	TAT	TAT	CAG			P-0037270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	135	459	0	ENST00000278616.4:c.3898_3900delinsCAG	p.Tyr1300Gln	p.Y1300Q	ENST00000278616	NM_000051.3	1300	TAT/CAG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519985		P-0037303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	30	831	0	ENST00000269305.4:c.857A>T	p.Glu286Val	p.E286V	ENST00000269305	NM_001126112.2	286	gAa/gTa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259331	36259331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	28	275	0	ENST00000300305.3:c.160G>A	p.Glu54Lys	p.E54K	ENST00000300305		54	Gag/Aag																																																																															
JUN	3725	MSKCC	GRCh37	1	59248007	59248007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	23	588	0	ENST00000371222.2:c.736G>A	p.Asp246Asn	p.D246N	ENST00000371222	NM_002228.3	246	Gac/Aac																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457279	67457279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	14	679	0	ENST00000327367.4:c.253C>T	p.His85Tyr	p.H85Y	ENST00000327367	NM_005902.3	85	Cat/Tat																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245383	46245383	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1326784750		P-0037303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	10	485	0	ENST00000334344.6:c.3477C>A	p.Ser1159Arg	p.S1159R	ENST00000334344	NM_152641.2	1159	agC/agA																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562747	21562748	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCG			P-0037303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	13	249	0	ENST00000382592.4:c.1169_1171dup	p.Pro390dup	p.P390dup	ENST00000382592	NM_014572.2	390	cgc/cCGCgc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637534	176637570	+	frameshift_variant	Frame_Shift_Del	DEL	TTAATGGGTTGTACTAAGAGTGCAGAGCCTGGAACCG	TTAATGGGTTGTACTAAGAGTGCAGAGCCTGGAACCG	-			P-0037303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	24	610	0	ENST00000439151.2:c.2134_2170del	p.Leu712ArgfsTer10	p.L712Rfs*10	ENST00000439151	NM_022455.4	712	TTAATGGGTTGTACTAAGAGTGCAGAGCCTGGAACCGag/ag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671748	30671748	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	17	765	0	ENST00000376406.3:c.5212G>C	p.Asp1738His	p.D1738H	ENST00000376406	NM_014641.2	1738	Gac/Cac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953087	2953087	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	19	807	0	ENST00000396946.4:c.2853G>C	p.Glu951Asp	p.E951D	ENST00000396946	NM_032415.4	951	gaG/gaC																																																																															
SMO	6608	MSKCC	GRCh37	7	128851528	128851528	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	10	792	0	ENST00000249373.3:c.1853G>T	p.Trp618Leu	p.W618L	ENST00000249373	NM_005631.4	618	tGg/tTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931784	39931784	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	10	799	0	ENST00000378444.4:c.2815T>A	p.Tyr939Asn	p.Y939N	ENST00000378444	NM_001123385.1	939	Tat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	302	397	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782664		P-0037398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	231	447	0	ENST00000269305.4:c.711G>C	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atC																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827927	40827927	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs536150112		P-0037398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	219	494	0	ENST00000373198.4:c.2501G>A	p.Arg834His	p.R834H	ENST00000373198	NM_133170.3	834	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971114	21971115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGTCGGGTGAGAGTGGCG			P-0037398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	120	225	0	ENST00000304494.5:c.225_243dup	p.Val82ArgfsTer44	p.V82Rfs*44	ENST00000304494	NM_000077.4	81	-/CGCCACTCTCACCCGACCC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603146	48603146	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0037398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	164	375	0	ENST00000342988.3:c.1447del	p.Ser483ValfsTer21	p.S483Vfs*21	ENST00000342988	NM_005359.5	483	Agt/gt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	91	418	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0037457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	67	329	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903772	114903772	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	24	429	0	ENST00000543371.1:c.776G>A	p.Trp259Ter	p.W259*	ENST00000543371	NM_001198531.1	259	tGg/tAg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435201	18435202	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	14	306	0	ENST00000266497.5:c.192dup	p.Val65CysfsTer16	p.V65Cfs*16	ENST00000266497		62	-/T																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119841	70119842	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	72	616	0	ENST00000245479.2:c.844dup	p.Val282GlyfsTer14	p.V282Gfs*14	ENST00000245479	NM_000346.3	281	-/G																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374944	45374944	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	81	500	0	ENST00000262160.6:c.899A>T	p.Asp300Val	p.D300V	ENST00000262160	NM_005901.5	300	gAt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764146326		P-0037524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	185	637	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0037524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	334	640	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0037524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	160	299	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925316	114925317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769592153		P-0037524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	219	421	17	ENST00000543371.1:c.1403dup	p.Cys469ValfsTer8	p.C469Vfs*8	ENST00000543371	NM_001198531.1	465	aga/agAa																																																																															
APC	324	MSKCC	GRCh37	5	112174043	112174044	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0037524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	89	330	0	ENST00000257430.4:c.2756_2757del	p.Arg919LysfsTer4	p.R919Kfs*4	ENST00000257430	NM_000038.5	918	GAg/g																																																																															
TERT	7015	MSKCC	GRCh37	5	1264568	1264568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761308654		P-0037524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	141	455	0	ENST00000310581.5:c.2794G>A	p.Gly932Ser	p.G932S	ENST00000310581	NM_198253.2	932	Ggc/Agc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095539	178095540	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	147	551	0	ENST00000397062.3:c.1791dup	p.Lys598Ter	p.K598*	ENST00000397062	NM_006164.4	597	-/T																																																																															
FANCC	2176	MSKCC	GRCh37	9	97934323	97934323	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	64	339	1	ENST00000289081.3:c.452A>G	p.Lys151Arg	p.K151R	ENST00000289081	NM_000136.2	151	aAa/aGa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44941825	44941825	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	128	198	0	ENST00000377967.4:c.3152del	p.Asn1051MetfsTer32	p.N1051Mfs*32	ENST00000377967	NM_021140.2	1050	gAa/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	166	480	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436297	110436305	+	inframe_deletion	In_Frame_Del	DEL	CGGCGGCGG	CGGCGGCGG	-	rs748854202		P-0037623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	50	61	0	ENST00000375856.3:c.2096_2104del	p.Ala699_Ala701del	p.A699_A701del	ENST00000375856	NM_003749.2	699	gCCGCCGCCGtg/gtg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	62	290	1	ENST00000250448.2:c.781C>A	p.Arg261Ser	p.R261S	ENST00000250448	NM_004496.3	261	Cgc/Agc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023637	27023638	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTCCAAGCCGC			P-0037623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	32	107	0	ENST00000324856.7:c.748_758dup	p.Ser255ArgfsTer112	p.S255Rfs*112	ENST00000324856	NM_006015.4	248	ggc/ggCTCCAAGCCGCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	84	799	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100727	8100728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs771019738		P-0037640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	53	770	1	ENST00000346208.3:c.708dup	p.Ser237GlnfsTer66	p.S237Qfs*66	ENST00000346208		234	ttc/ttCc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845523	151845524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	55	988	0	ENST00000262189.6:c.13488dup	p.Lys4497Ter	p.K4497*	ENST00000262189	NM_170606.2	4496	-/T																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117308	115117308	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0037640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	28	406	0	ENST00000257566.3:c.864+2T>C		p.X288_splice	ENST00000257566	NM_016569.3	288																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56178694	56178695	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0037640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	13	261	0	ENST00000399503.3:c.3666+2dup		p.X1222_splice	ENST00000399503	NM_005921.1	1222																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27106314	27106331	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTCTTGCCAAGCGCTG	TTCTCTTGCCAAGCGCTG	AGAGAATC			P-0037640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	46	869	2	ENST00000324856.7:c.5925_5942delinsAGAGAATC	p.Asp1975GlufsTer37	p.D1975Efs*37	ENST00000324856	NM_006015.4	1975	gaTTCTCTTGCCAAGCGCTGc/gaAGAGAATCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0037647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	242	444	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0037647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	216	738	5	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	125	470	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0037657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	162	522	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112174058	112174058	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	42	325	0	ENST00000257430.4:c.2767A>T	p.Arg923Ter	p.R923*	ENST00000257430	NM_000038.5	923	Aga/Tga																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182665110	182665110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1361986556		P-0037657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	53	378	0	ENST00000292782.4:c.616C>T	p.Arg206Ter	p.R206*	ENST00000292782	NM_020640.2	206	Cga/Tga																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020866	26020866	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	92	347	0	ENST00000357647.3:c.149G>C	p.Arg50Pro	p.R50P	ENST00000357647	NM_003529.2	50	cGc/cCc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911170	29911170	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs199474532		P-0037657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	45	408	0	ENST00000376809.5:c.469T>G	p.Trp157Gly	p.W157G	ENST00000376809	NM_002116.7	157	Tgg/Ggg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323208	31323208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	271	643	0	ENST00000412585.2:c.781G>A	p.Gly261Arg	p.G261R	ENST00000412585	NM_005514.6	261	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0037689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	738	695	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
SDHA	6389	MSKCC	GRCh37	5	240539	240539	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	13	33	0	ENST00000264932.6:c.1499G>C	p.Arg500Thr	p.R500T	ENST00000264932	NM_004168.2	500	aGa/aCa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428229	49428229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	143	694	1	ENST00000301067.7:c.10471C>T	p.Arg3491Cys	p.R3491C	ENST00000301067	NM_003482.3	3491	Cgt/Tgt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73349447	73349447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	576	543	0	ENST00000377767.4:c.889C>T	p.Leu297Phe	p.L297F	ENST00000377767	NM_014953.3	297	Ctc/Ttc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30134422	30134422	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	144	565	0	ENST00000263025.4:c.109G>C	p.Asp37His	p.D37H	ENST00000263025	NM_002746.2	37	Gac/Cac																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375007	45375007	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	201	556	0	ENST00000262160.6:c.836A>G	p.Tyr279Cys	p.Y279C	ENST00000262160	NM_005901.5	279	tAt/tGt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164458	36164458	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	37	197	0	ENST00000300305.3:c.1417G>C	p.Glu473Gln	p.E473Q	ENST00000300305		473	Gag/Cag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31401588	31401588	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1196	159	744	0	ENST00000344624.3:c.4076G>C	p.Arg1359Thr	p.R1359T	ENST00000344624		1359	aGa/aCa																																																																															
RB1	5925	MSKCC	GRCh37	13	48878177	48878181	+	frameshift_variant	Frame_Shift_Del	DEL	TCTCG	TCTCG	-			P-0037689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	57	87	0	ENST00000267163.4:c.131_135del	p.Leu44GlnfsTer3	p.L44Qfs*3	ENST00000267163	NM_000321.2	43	ccTCTCGtc/cctc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0037791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	58	908	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112175288	112175288	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	114	336	0	ENST00000257430.4:c.3997A>T	p.Lys1333Ter	p.K1333*	ENST00000257430	NM_000038.5	1333	Aaa/Taa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636973	176636973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1215568879		P-0037791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	59	752	1	ENST00000439151.2:c.1573C>T	p.Arg525Trp	p.R525W	ENST00000439151	NM_022455.4	525	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578183	7578184	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCT			P-0037791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	128	889	0	ENST00000269305.4:c.662_665dup	p.Pro223AlafsTer3	p.P223Afs*3	ENST00000269305	NM_001126112.2	222	ccg/ccAGCCg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58711302	58711302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	59	716	0	ENST00000305921.3:c.790G>T	p.Asp264Tyr	p.D264Y	ENST00000305921	NM_003620.3	264	Gac/Tac																																																																															
BARD1	580	MSKCC	GRCh37	2	215645800	215645800	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	51	619	0	ENST00000260947.4:c.798G>C	p.Leu266Phe	p.L266F	ENST00000260947	NM_000465.2	266	ttG/ttC																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	167	357	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	257	683	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	290	667	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437697	52437697	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	235	671	0	ENST00000460680.1:c.1464del	p.Ser489AlafsTer82	p.S489Afs*82	ENST00000460680	NM_004656.3	488	ccC/cc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685330	86685330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	24	123	0	ENST00000274376.6:c.3046C>T	p.Arg1016Cys	p.R1016C	ENST00000274376	NM_002890.2	1016	Cgt/Tgt																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	302	853	2	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	391	784	0	ENST00000269305.4:c.379T>C	p.Ser127Pro	p.S127P	ENST00000269305	NM_001126112.2	127	Tcc/Ccc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500499	99500499	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771642071		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	230	628	0	ENST00000268035.6:c.3932C>T	p.Ser1311Leu	p.S1311L	ENST00000268035	NM_000875.3	1311	tCg/tTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	155	443	2	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs758740142		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	97	199	4	ENST00000265335.6:c.2801del	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913253	39913253	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	221	517	0	ENST00000378444.4:c.4862del	p.Pro1621GlnfsTer53	p.P1621Qfs*53	ENST00000378444	NM_001123385.1	1621	cCa/ca																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	174	549	6	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
POLE	5426	MSKCC	GRCh37	12	133248860	133248860	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116260568		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	304	585	0	ENST00000320574.5:c.1735C>T	p.Arg579Cys	p.R579C	ENST00000320574	NM_006231.2	579	Cgc/Tgc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	137	485	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
RARA	5914	MSKCC	GRCh37	17	38512401	38512402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs745553450		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	176	705	2	ENST00000254066.5:c.1319dup	p.Pro441AlafsTer5	p.P441Afs*5	ENST00000254066	NM_000964.3	438	gcc/gCcc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81925132	81925132	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199636472		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	99	532	0	ENST00000359376.3:c.923C>T	p.Ala308Val	p.A308V	ENST00000359376	NM_002661.3	308	gCg/gTg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390120	89390120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	142	302	0	ENST00000336596.2:c.869G>T	p.Cys290Phe	p.C290F	ENST00000336596	NM_005233.5	290	tGc/tTc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097830	8097830	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1425866094		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	275	635	0	ENST00000346208.3:c.212C>T	p.Thr71Met	p.T71M	ENST00000346208		71	aCg/aTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29585494	29585494	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660428		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	74	232	0	ENST00000358273.4:c.4306G>A	p.Glu1436Lys	p.E1436K	ENST00000358273	NM_001042492.2	1436	Gaa/Aaa																																																																															
FYN	2534	MSKCC	GRCh37	6	112041211	112041211	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140762956		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	192	449	1	ENST00000368678.4:c.44C>T	p.Thr15Met	p.T15M	ENST00000368678		15	aCg/aTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	140	596	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	475	874	2	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300040	137300040	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	111	726	0	ENST00000481739.1:c.331del	p.Leu111TrpfsTer57	p.L111Wfs*57	ENST00000481739	NM_002957.4	109	Ccc/cc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344955	118344955	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	109	243	1	ENST00000534358.1:c.3086del	p.Lys1029ArgfsTer65	p.K1029Rfs*65	ENST00000534358	NM_005933.3	1027	ctA/ct																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522590	176522590	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765924274		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	165	768	0	ENST00000292408.4:c.1687C>T	p.Arg563Trp	p.R563W	ENST00000292408	NM_213647.1	563	Cgg/Tgg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94197281	94197282	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs774440500		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	133	382	0	ENST00000323929.3:c.1222dup	p.Thr408AsnfsTer49	p.T408Nfs*49	ENST00000323929	NM_005591.3	408	aca/aAca																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287468	46287469	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	126	376	0	ENST00000334344.6:c.5333dup	p.Asn1778LysfsTer4	p.N1778Kfs*4	ENST00000334344	NM_152641.2	1776	tta/ttAa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121888	2121888	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779275341		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	258	780	0	ENST00000219476.3:c.2050G>A	p.Val684Met	p.V684M	ENST00000219476	NM_000548.3	684	Gtg/Atg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1620979	1620979	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1329397192		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	361	845	3	ENST00000344749.5:c.1081del	p.Gln361ArgfsTer33	p.Q361Rfs*33	ENST00000344749	NM_001136139.2	361	Cag/ag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258894	16258894	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	177	672	3	ENST00000375759.3:c.6164del	p.Pro2055LeufsTer9	p.P2055Lfs*9	ENST00000375759	NM_015001.2	2053	aaC/aa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121437355	121437355	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	256	720	0	ENST00000257555.6:c.1693C>A	p.Leu565Ile	p.L565I	ENST00000257555		565	Ctc/Atc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11319305	11319305	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	39	462	0	ENST00000361445.4:c.162G>T	p.Glu54Asp	p.E54D	ENST00000361445	NM_004958.3	54	gaG/gaT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023193	27023193	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	37	150	0	ENST00000324856.7:c.299T>C	p.Leu100Pro	p.L100P	ENST00000324856	NM_006015.4	100	cTg/cCg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65312372	65312372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	172	441	0	ENST00000342505.4:c.1947C>A	p.His649Gln	p.H649Q	ENST00000342505	NM_002227.2	649	caC/caA																																																																															
TET1	80312	MSKCC	GRCh37	10	70446207	70446207	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	160	439	0	ENST00000373644.4:c.5147C>G	p.Thr1716Arg	p.T1716R	ENST00000373644	NM_030625.2	1716	aCa/aGa																																																																															
PGR	5241	MSKCC	GRCh37	11	100999024	100999024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	175	611	0	ENST00000325455.5:c.778del	p.Ala260ArgfsTer41	p.A260Rfs*41	ENST00000325455	NM_001202474.3	260	Gcg/cg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246677	46246677	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	39	140	0	ENST00000334344.6:c.4771C>T	p.Gln1591Ter	p.Q1591*	ENST00000334344	NM_152641.2	1591	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421834	49421834	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs117904191		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	116	766	0	ENST00000301067.7:c.14473C>T	p.Arg4825Trp	p.R4825W	ENST00000301067	NM_003482.3	4825	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434851	49434851	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1460481305		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	61	874	0	ENST00000301067.7:c.6702del	p.Arg2235AspfsTer29	p.R2235Dfs*29	ENST00000301067	NM_003482.3	2234	ccC/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443789	49443789	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	320	745	0	ENST00000301067.7:c.3582del	p.Thr1195HisfsTer17	p.T1195Hfs*17	ENST00000301067	NM_003482.3	1194	ccC/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444006	49444006	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs541921137		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	235	660	1	ENST00000301067.7:c.3365C>T	p.Thr1122Ile	p.T1122I	ENST00000301067	NM_003482.3	1122	aCa/aTa																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50484165	50484165	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	73	540	0	ENST00000394963.4:c.1015T>G	p.Cys339Gly	p.C339G	ENST00000394963	NM_003076.4	339	Tgt/Ggt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861804	57861804	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	44	521	0	ENST00000228682.2:c.1105T>C	p.Cys369Arg	p.C369R	ENST00000228682	NM_005269.2	369	Tgc/Cgc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73345121	73345121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	123	284	0	ENST00000377767.4:c.1676C>T	p.Ala559Val	p.A559V	ENST00000377767	NM_014953.3	559	gCa/gTa																																																																															
CD276	80381	MSKCC	GRCh37	15	73996065	73996065	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747735855		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	202	868	3	ENST00000318443.5:c.799C>T	p.Arg267Cys	p.R267C	ENST00000318443	NM_001024736.1	267	Cgc/Tgc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646215	3646215	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1175366606		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	242	768	1	ENST00000294008.3:c.1863G>T	p.Glu621Asp	p.E621D	ENST00000294008	NM_032444.2	621	gaG/gaT																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349508	89349508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143417087		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	258	677	0	ENST00000301030.4:c.3442G>A	p.Gly1148Ser	p.G1148S	ENST00000301030	NM_001256183.1	1148	Ggc/Agc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492830	56492832	+	inframe_deletion	In_Frame_Del	DEL	CCA	CCA	-			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	173	368	0	ENST00000407977.2:c.107_109del	p.Val36del	p.V36del	ENST00000407977		36	gTGGag/gag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533094	63533094	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	201	581	0	ENST00000307078.5:c.1800del	p.Gly601AlafsTer88	p.G601Afs*88	ENST00000307078	NM_004655.3	600	ccC/cc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211124	2211124	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	345	807	0	ENST00000398665.3:c.1378T>G	p.Phe460Val	p.F460V	ENST00000398665	NM_032482.2	460	Ttc/Gtc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349715	15349715	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	239	621	0	ENST00000263377.2:c.3859C>G	p.Gln1287Glu	p.Q1287E	ENST00000263377	NM_058243.2	1287	Cag/Gag																																																																															
BARD1	580	MSKCC	GRCh37	2	215632276	215632276	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779468443		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	126	474	0	ENST00000260947.4:c.1498G>A	p.Asp500Asn	p.D500N	ENST00000260947	NM_000465.2	500	Gat/Aat																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660748	227660748	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	278	685	0	ENST00000305123.5:c.2707A>G	p.Ser903Gly	p.S903G	ENST00000305123	NM_005544.2	903	Agt/Ggt																																																																															
MST1	4485	MSKCC	GRCh37	3	49722777	49722777	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1381537507		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	13	63	0	ENST00000449682.2:c.1462C>T	p.Arg488Trp	p.R488W	ENST00000449682	NM_020998.3	488	Cgg/Tgg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637650	52637650	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752454573		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	187	417	0	ENST00000394830.3:c.2666C>T	p.Pro889Leu	p.P889L	ENST00000394830	NM_018313.4	889	cCg/cTg																																																																															
ATR	545	MSKCC	GRCh37	3	142222220	142222220	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	93	389	1	ENST00000350721.4:c.5272G>T	p.Gly1758Ter	p.G1758*	ENST00000350721	NM_001184.3	1758	Gga/Tga																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191229	185191229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	127	444	0	ENST00000265026.3:c.2110G>A	p.Ala704Thr	p.A704T	ENST00000265026	NM_004721.4	704	Gct/Act																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245453	153245453	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	68	509	0	ENST00000281708.4:c.1738C>A	p.His580Asn	p.H580N	ENST00000281708	NM_033632.3	580	Cac/Aac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153259052	153259052	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	58	163	0	ENST00000281708.4:c.763G>T	p.Glu255Ter	p.E255*	ENST00000281708	NM_033632.3	255	Gaa/Taa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176665360	176665360	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	89	353	0	ENST00000439151.2:c.4044G>T	p.Glu1348Asp	p.E1348D	ENST00000439151	NM_022455.4	1348	gaG/gaT																																																																															
CARD11	84433	MSKCC	GRCh37	7	2985533	2985533	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	156	467	0	ENST00000396946.4:c.278A>G	p.Glu93Gly	p.E93G	ENST00000396946	NM_032415.4	93	gAg/gGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273281	55273281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	221	467	1	ENST00000275493.2:c.3604C>T	p.Pro1202Ser	p.P1202S	ENST00000275493	NM_005228.3	1202	Cca/Tca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012235	152012235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	140	357	0	ENST00000262189.6:c.578G>A	p.Arg193Lys	p.R193K	ENST00000262189	NM_170606.2	193	aGa/aAa																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006158	22006158	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1377452255		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	298	667	0	ENST00000276925.6:c.245G>A	p.Arg82Gln	p.R82Q	ENST00000276925	NM_004936.3	82	cGa/cAa																																																																															
ABL1	25	MSKCC	GRCh37	9	133760343	133760343	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	96	620	0	ENST00000318560.5:c.2666A>T	p.Lys889Met	p.K889M	ENST00000318560	NM_005157.4	889	aAg/aTg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564638	139564638	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778100938		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	311	866	0	ENST00000308874.7:c.427G>A	p.Ala143Thr	p.A143T	ENST00000308874		143	Gct/Act																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139804439	139804439	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs199507094		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	257	571	0	ENST00000247668.2:c.596G>T	p.Arg199Leu	p.R199L	ENST00000247668	NM_021138.3	199	cGg/cTg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	271	538	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
ATM	472	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781894		P-0037943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	371	539	1	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112174241	112174241	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	165	450	0	ENST00000257430.4:c.2950G>T	p.Glu984Ter	p.E984*	ENST00000257430	NM_000038.5	984	Gaa/Taa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81606096	81606096	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	305	534	0	ENST00000298171.2:c.766A>C	p.Asn256His	p.N256H	ENST00000298171	NM_000369.2	256	Aac/Cac																																																																															
FANCA	2175	MSKCC	GRCh37	16	89882995	89882995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	140	137	0	ENST00000389301.3:c.29C>T	p.Ala10Val	p.A10V	ENST00000389301	NM_000135.2	10	gCc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175760	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	166	363	0	ENST00000257430.4:c.4469A>C	p.His1490Pro	p.H1490P	ENST00000257430	NM_000038.5	1490	cAt/cCt																																																																															
APC	324	MSKCC	GRCh37	5	112175765	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	T			P-0037943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	148	352	0	ENST00000257430.4:c.4474_4475delinsT	p.Ala1492SerfsTer15	p.A1492Sfs*15	ENST00000257430	NM_000038.5	1492	GCc/Tc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0039260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	1066	579	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578397	7578397	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	144	554	0	ENST00000269305.4:c.533A>C	p.His178Pro	p.H178P	ENST00000269305	NM_001126112.2	178	cAc/cCc																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0039260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	116	220	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117695938	117695938	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142973937		P-0039260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	50	486	3	ENST00000369458.3:c.499C>T	p.Arg167Trp	p.R167W	ENST00000369458	NM_024626.3	167	Cgg/Tgg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117708159	117708159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	83	316	0	ENST00000368508.3:c.2018G>A	p.Ser673Asn	p.S673N	ENST00000368508	NM_002944.2	673	aGt/aAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578411	7578412	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAACCTCCGTCATGTGCTGTG			P-0039790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	62	655	0	ENST00000269305.4:c.497_518dup	p.Arg174ThrfsTer14	p.R174Tfs*14	ENST00000269305	NM_001126112.2	173	gtg/gtCACAGCACATGACGGAGGTTGTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874728	151874734	+	frameshift_variant	Frame_Shift_Del	DEL	GTCTAGG	GTCTAGG	-			P-0039790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	47	385	0	ENST00000262189.6:c.7804_7810del	p.Pro2602ThrfsTer43	p.P2602Tfs*43	ENST00000262189	NM_170606.2	2602	CCTAGACac/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	61	535	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0039817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	110	971	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0039817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	53	517	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
AR	367	MSKCC	GRCh37	X	66765159	66765188	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	-	rs1222408130		P-0039817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	29	222	0	ENST00000374690.3:c.210_239del	p.Gln71_Gln80del	p.Q71_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923654	72923654	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746242918		P-0039817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	100	830	0	ENST00000268489.5:c.3424C>T	p.Arg1142Cys	p.R1142C	ENST00000268489	NM_006885.3	1142	Cgc/Tgc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961253	15961253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	89	524	0	ENST00000268712.3:c.6136C>T	p.His2046Tyr	p.H2046Y	ENST00000268712	NM_006311.3	2046	Cat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	96	485	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0039939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	244	776	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281250	15281250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1184522923		P-0039939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	247	891	2	ENST00000263388.2:c.5006G>A	p.Arg1669His	p.R1669H	ENST00000263388	NM_000435.2	1669	cGc/cAc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073773	8073774	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	42	360	0	ENST00000377482.5:c.885dup	p.Pro296AlafsTer4	p.P296Afs*4	ENST00000377482	NM_018948.3	295	-/G																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974791	21974792	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0039939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	107	233	0	ENST00000304494.5:c.35_36insAG	p.Ala13GlyfsTer14	p.A13Gfs*14	ENST00000304494	NM_000077.4	12	tcg/tcAGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	73	360	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	183	228	0				ENST00000310581	NM_198253.2																																																																																	
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	98	397	0	ENST00000304494.5:c.238del	p.Arg80AspfsTer66	p.R80Dfs*66	ENST00000304494	NM_000077.4	80	Cga/ga																																																																															
ATM	472	MSKCC	GRCh37	11	108206578	108206578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	63	263	0	ENST00000278616.4:c.8158G>T	p.Asp2720Tyr	p.D2720Y	ENST00000278616	NM_000051.3	2720	Gat/Tat																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779289	3779289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	241	575	0	ENST00000262367.5:c.5759G>T	p.Gly1920Val	p.G1920V	ENST00000262367	NM_004380.2	1920	gGc/gTc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40857126	40857126	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1159977413		P-0039967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	84	430	0	ENST00000428826.2:c.1915A>G	p.Ile639Val	p.I639V	ENST00000428826		639	Att/Gtt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39262352	39262352	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0039967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	71	493	0	ENST00000402219.2:c.1074+1del		p.X358_splice	ENST00000402219	NM_005633.3	358																																																																																
PMS1	5378	MSKCC	GRCh37	2	190656644	190656644	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs973362695		P-0039967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	35	214	0	ENST00000441310.2:c.109G>T	p.Ala37Ser	p.A37S	ENST00000441310	NM_000534.4	37	Gcc/Tcc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561418	9561418	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	120	445	0	ENST00000353224.5:c.364G>C	p.Glu122Gln	p.E122Q	ENST00000353224	NM_177990.2	122	Gaa/Caa																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427568	72427568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	66	245	0	ENST00000477973.2:c.920G>T	p.Asp308Tyr	p.D308Y	ENST00000477973	NM_012234.5	308	Gac/Tac																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205182	128205182	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	162	551	0	ENST00000341105.2:c.259C>A	p.Pro87Thr	p.P87T	ENST00000341105	NM_032638.4	87	Cca/Aca																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149501521	149501522	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0039967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	114	642	0	ENST00000261799.4:c.2265_2266delinsTT	p.Asp756Tyr	p.D756Y	ENST00000261799	NM_002609.3	755	ctGGac/ctTTac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853349	151853349	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs778429633		P-0039967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	108	410	0	ENST00000262189.6:c.11753A>G	p.Asn3918Ser	p.N3918S	ENST00000262189	NM_170606.2	3918	aAt/aGt																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650282	48650282	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	138	637	0	ENST00000376670.3:c.252G>C	p.Met84Ile	p.M84I	ENST00000376670	NM_002049.3	84	atG/atC																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149501521	149501521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	112	642	0	ENST00000261799.4:c.2266G>T	p.Asp756Tyr	p.D756Y	ENST00000261799	NM_002609.3	756	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578487	7578488	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAACCC			P-0040034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1477	158	899	0	ENST00000269305.4:c.437_442dup	p.Val147_Asp148insGlyVal	p.V147_D148insGV	ENST00000269305	NM_001126112.2	148	gat/gGGGTTGat																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0040112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	213	227	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108235809	108235809	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0040112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	173	237	0	ENST00000278616.4:c.8851G>T	p.Val2951Phe	p.V2951F	ENST00000278616	NM_000051.3	2951	Gtc/Ttc																																																																															
ATM	472	MSKCC	GRCh37	11	108098387	108098387	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	55	295	0	ENST00000278616.4:c.37del	p.Arg13ValfsTer3	p.R13Vfs*3	ENST00000278616	NM_000051.3	12	tgC/tg																																																																															
TET2	54790	MSKCC	GRCh37	4	106197471	106197471	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	201	292	0	ENST00000380013.4:c.5804A>G	p.Tyr1935Cys	p.Y1935C	ENST00000380013	NM_001127208.2	1935	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	13	358	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	19	411	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974715	21974732	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCCCCCGCCTCCA	GCAGCGCCCCCGCCTCCA	-			P-0040178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	19	414	0	ENST00000304494.5:c.95_112del	p.Leu32_Leu37del	p.L32_L37del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCcc/ccc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578222	7578225	+	frameshift_variant	Frame_Shift_Del	DEL	TCTG	TCTG	-			P-0040178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	50	715	1	ENST00000269305.4:c.624_627del	p.Asp208GlufsTer38	p.D208Efs*38	ENST00000269305	NM_001126112.2	208	gaCAGA/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	201	441	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533556	63533556	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147716924		P-0040241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	319	821	2	ENST00000307078.5:c.1598C>T	p.Ala533Val	p.A533V	ENST00000307078	NM_004655.3	533	gCg/gTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974783	21974783	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876658556		P-0040241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	169	212	0	ENST00000304494.5:c.44G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tGg/tAg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44820588	44820589	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	59	233	3	ENST00000377967.4:c.289dup	p.Cys97LeufsTer29	p.C97Lfs*29	ENST00000377967	NM_021140.2	95	-/T																																																																															
TP53	7157	MSKCC	GRCh37	17	7578207	7578207	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	340	733	0	ENST00000269305.4:c.642del	p.His214GlnfsTer33	p.H214Qfs*33	ENST00000269305	NM_001126112.2	214	caT/ca																																																																															
IRF4	3662	MSKCC	GRCh37	6	407527	407527	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs908661692		P-0040331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	38	426	0	ENST00000380956.4:c.1285G>A	p.Asp429Asn	p.D429N	ENST00000380956	NM_001195286.1	429	Gat/Aat																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115901	8115902	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	58	542	0	ENST00000346208.3:c.1248dup	p.Thr417AspfsTer90	p.T417Dfs*90	ENST00000346208		416	ctg/ctGg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120683	115120684	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0040331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	102	906	0	ENST00000257566.3:c.320_322dup	p.Leu107_Glu108insVal	p.L107_E108insV	ENST00000257566	NM_016569.3	108	gag/gTGGag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	19	431	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0040340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	45	709	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs757274881		P-0040372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	109	514	0	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542049	187542049	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	35	214	0	ENST00000441802.2:c.5691del	p.Val1898SerfsTer4	p.V1898Sfs*4	ENST00000441802	NM_005245.3	1897	aaA/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0040508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	94	263	2	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	98	389	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0040508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	55	384	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876658483		P-0040508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	153	752	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519946		P-0040508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	19	603	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7573988	7573988	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	153	702	0	ENST00000269305.4:c.1039G>C	p.Ala347Pro	p.A347P	ENST00000269305	NM_001126112.2	347	Gcc/Ccc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220134	5220134	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115469963		P-0040508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	95	547	0	ENST00000357368.4:c.3581G>A	p.Arg1194His	p.R1194H	ENST00000357368	NM_002850.3	1194	cGc/cAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119952	70119953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	107	375	0	ENST00000245479.2:c.955dup	p.Tyr319LeufsTer259	p.Y319Lfs*259	ENST00000245479	NM_000346.3	318	-/T																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5240265	5240265	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	172	785	1	ENST00000357368.4:c.1649A>T	p.Gln550Leu	p.Q550L	ENST00000357368	NM_002850.3	550	cAg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112137069	112137079	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GGTAATGGTCA	GGTAATGGTCA	-			P-0040508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	122	341	0	ENST00000257430.4:c.828_834+4del		p.GNGQ275fs	ENST00000257430	NM_000038.5	275	GGTAATGGTCAg/g																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508021	106508021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	40	201	0	ENST00000359195.3:c.15C>A	p.Asn5Lys	p.N5K	ENST00000359195	NM_002649.2	5	aaC/aaA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0040622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	43	516	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115111972	115111972	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0040622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	139	722	0	ENST00000257566.3:c.1768C>T	p.Gln590Ter	p.Q590*	ENST00000257566	NM_016569.3	590	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121913284		P-0040622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	33	338	0	ENST00000263967.3:c.1035T>G	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaG																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109879	115109879	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1268167495		P-0040622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	137	643	0	ENST00000257566.3:c.1999G>A	p.Ala667Thr	p.A667T	ENST00000257566	NM_016569.3	667	Gcg/Acg																																																																															
CDH1	999	MSKCC	GRCh37	16	68863669	68863694	+	frameshift_variant	Frame_Shift_Del	DEL	ATCCCGATGAAATTGGAAATTTTATT	ATCCCGATGAAATTGGAAATTTTATT	-			P-0040622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	127	506	0	ENST00000261769.5:c.2408_2433del	p.Asn803ArgfsTer2	p.N803Rfs*2	ENST00000261769	NM_004360.3	803	aATCCCGATGAAATTGGAAATTTTATT/a																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0040687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	44	444	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044970	47044970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	68	801	1	ENST00000329236.7:c.2062C>T	p.Arg688Cys	p.R688C	ENST00000329236	NM_001204466.1	688	Cgc/Tgc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102199656	102199661	+	inframe_deletion	In_Frame_Del	DEL	ATGAAA	ATGAAA	-			P-0040687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	21	336	0	ENST00000263464.3:c.1064_1069del	p.Glu355_Asn356del	p.E355_N356del	ENST00000263464	NM_001165.4	354	gATGAAAat/gat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912532	32912533	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0040687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	40	411	1	ENST00000380152.3:c.4041_4042del	p.Cys1348TyrfsTer3	p.C1348Yfs*3	ENST00000380152		1347	gTT/g																																																																															
TSC1	7248	MSKCC	GRCh37	9	135787833	135787833	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	45	389	1	ENST00000298552.3:c.749T>C	p.Leu250Ser	p.L250S	ENST00000298552	NM_001162426.1	250	tTa/tCa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	53	341	2	ENST00000342505.4:c.2580dup	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																																																															
CDK12	51755	MSKCC	GRCh37	17	37676214	37676214	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267604833		P-0040742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	117	474	0	ENST00000447079.4:c.2969C>T	p.Pro990Leu	p.P990L	ENST00000447079	NM_015083.1	990	cCt/cTt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67593250	67593250	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	38	257	0	ENST00000274335.5:c.1996G>T	p.Glu666Ter	p.E666*	ENST00000274335		666	Gaa/Taa																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197459	26197459	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	93	329	0	ENST00000356476.2:c.20C>A	p.Thr7Asn	p.T7N	ENST00000356476		7	aCt/aAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0040779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	349	554	1	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89871790	89871790	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	66	530	0	ENST00000389301.3:c.607A>T	p.Met203Leu	p.M203L	ENST00000389301	NM_000135.2	203	Atg/Ttg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672842	30672842	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	50	795	0	ENST00000376406.3:c.4118T>G	p.Leu1373Arg	p.L1373R	ENST00000376406	NM_014641.2	1373	cTc/cGc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0040831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	17	425	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0040831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	49	717	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0040831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	14	261	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0040831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	21	398	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88677066	88677066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	32	591	0	ENST00000372037.3:c.851G>A	p.Arg284His	p.R284H	ENST00000372037	NM_004329.2	284	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	53	402	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0040851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	35	289	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46736432	46736432	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764014400		P-0040851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	39	526	1	ENST00000371975.4:c.1144C>T	p.Arg382Trp	p.R382W	ENST00000371975	NM_003579.3	382	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108139307	108139307	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	44	575	0	ENST00000278616.4:c.2809G>T	p.Glu937Ter	p.E937*	ENST00000278616	NM_000051.3	937	Gaa/Taa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37673781	37673781	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	56	540	0	ENST00000447079.4:c.2935C>T	p.Arg979Ter	p.R979*	ENST00000447079	NM_015083.1	979	Cga/Tga																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243460	41243460	+	stop_gained	Nonsense_Mutation	SNP	G	G	C	rs398122680		P-0040851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	42	567	0	ENST00000357654.3:c.4088C>G	p.Ser1363Ter	p.S1363*	ENST00000357654	NM_007294.3	1363	tCa/tGa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25978980	25978989	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAACCTGGGT	CAACCTGGGT	-			P-0040851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	30	372	0	ENST00000435504.4:c.940-6_943del		p.X314_splice	ENST00000435504		314																																																																																
APC	324	MSKCC	GRCh37	5	112175206	112175206	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	30	198	0	ENST00000257430.4:c.3915del	p.Glu1306LysfsTer2	p.E1306Kfs*2	ENST00000257430	NM_000038.5	1305	gcA/gc																																																																															
NPM1	4869	MSKCC	GRCh37	5	170818365	170818365	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	44	342	0	ENST00000296930.5:c.195G>C	p.Met65Ile	p.M65I	ENST00000296930	NM_002520.6	65	atG/atC																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs193920894		P-0040915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	101	422	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25468141	25468141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	102	634	0	ENST00000264709.3:c.1535G>A	p.Gly512Glu	p.G512E	ENST00000264709	NM_175629.2	512	gGa/gAa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139407859	139407859	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756642176		P-0040915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	28	517	0	ENST00000277541.6:c.2338C>T	p.Arg780Trp	p.R780W	ENST00000277541	NM_017617.3	780	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254938	16254938	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	137	529	0	ENST00000375759.3:c.2203C>G	p.Gln735Glu	p.Q735E	ENST00000375759	NM_015001.2	735	Cag/Gag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111495	8111496	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGAGGG			P-0041157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	163	626	0	ENST00000346208.3:c.987_988insGTGGAGG	p.Arg330ValfsTer24	p.R330Vfs*24	ENST00000346208		327	-/TGGAGGG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	56	431	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0041216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	227	647	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0041216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	368	445	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492796	56492796	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	162	524	0	ENST00000407977.2:c.143T>C	p.Ile48Thr	p.I48T	ENST00000407977		48	aTc/aCc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593515	48593517	+	frameshift_variant	Frame_Shift_Del	DEL	TGG	TGG	C			P-0041216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	52	363	0	ENST00000342988.3:c.1266_1268delinsC	p.Gly423ArgfsTer5	p.G423Rfs*5	ENST00000342988	NM_005359.5	422	ccTGGa/ccCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0041329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	110	344	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0041329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	285	567	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	12	493	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0041479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	79	394	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0041479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	186	349	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0041479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	158	235	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242511	55242511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs121913418		P-0041479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	23	315	0	ENST00000275493.2:c.2281G>A	p.Asp761Asn	p.D761N	ENST00000275493	NM_005228.3	761	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579514	7579514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	335	599	0	ENST00000269305.4:c.173del	p.Pro58GlnfsTer65	p.P58Qfs*65	ENST00000269305	NM_001126112.2	58	cCa/ca																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247280	153247280	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	223	362	0	ENST00000281708.4:c.1522C>T	p.Gln508Ter	p.Q508*	ENST00000281708	NM_033632.3	508	Caa/Taa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12006417	12006418	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	133	464	0	ENST00000396373.4:c.391dup	p.Ser131PhefsTer23	p.S131Ffs*23	ENST00000396373	NM_001987.4	129	ctt/cTtt																																																																															
ATR	545	MSKCC	GRCh37	3	142232354	142232361	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCTTGA	CTTCTTGA	-			P-0041479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	84	359	0	ENST00000350721.4:c.4623_4630del	p.Asn1541LysfsTer16	p.N1541Kfs*16	ENST00000350721	NM_001184.3	1541	aaTCAAGAAGat/aaat																																																																															
RAD21	5885	MSKCC	GRCh37	8	117866613	117866613	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0041479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	42	492	0	ENST00000297338.2:c.1032T>A	p.Tyr344Ter	p.Y344*	ENST00000297338	NM_006265.2	344	taT/taA																																																																															
AGO2	27161	MSKCC	GRCh37	8	141551454	141551454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	120	441	0	ENST00000220592.5:c.1843G>A	p.Val615Met	p.V615M	ENST00000220592	NM_012154.3	615	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0041591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	297	718	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383999	84383999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150371881		P-0041591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	110	404	0	ENST00000321945.7:c.853C>T	p.Arg285Trp	p.R285W	ENST00000321945	NM_139076.2	285	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	46	164	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874147	151874148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs771193709		P-0041591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	311	367	13	ENST00000262189.6:c.8390dup	p.Glu2798GlyfsTer11	p.E2798Gfs*11	ENST00000262189	NM_170606.2	2797	aag/aaAg																																																																															
FYN	2534	MSKCC	GRCh37	6	112041022	112041022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376255649		P-0041591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	110	328	0	ENST00000368678.4:c.233C>T	p.Thr78Met	p.T78M	ENST00000368678		78	aCg/aTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106108	27106108	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	145	447	0	ENST00000324856.7:c.5719del	p.Ile1907SerfsTer16	p.I1907Sfs*16	ENST00000324856	NM_006015.4	1907	Atc/tc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114917829	114917829	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0041591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	202	467	0	ENST00000543371.1:c.1318+1G>C		p.X440_splice	ENST00000543371	NM_001198531.1	440																																																																																
SOS1	6654	MSKCC	GRCh37	2	39216449	39216449	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	119	329	0	ENST00000402219.2:c.3353A>G	p.Asp1118Gly	p.D1118G	ENST00000402219	NM_005633.3	1118	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112173263	112173263	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	48	131	0	ENST00000257430.4:c.1972G>T	p.Glu658Ter	p.E658*	ENST00000257430	NM_000038.5	658	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0041598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	251	296	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0041598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	297	718	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599949	10599950	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0041598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	88	803	0	ENST00000171111.5:c.1626_1627del	p.Glu542AspfsTer31	p.E542Dfs*31	ENST00000171111	NM_203500.1	542	gaGAcg/gacg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016647	12016648	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0041598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	131	303	0	ENST00000353533.5:c.783_784del	p.Asp263CysfsTer4	p.D263Cfs*4	ENST00000353533	NM_003010.3	261	acAAga/acga																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626783	14626783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	527	522	0	ENST00000254322.2:c.992G>A	p.Arg331Lys	p.R331K	ENST00000254322	NM_006145.1	331	aGa/aAa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720678	89720679	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0041598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	133	160	0	ENST00000371953.3:c.830_831del	p.Thr277IlefsTer20	p.T277Ifs*20	ENST00000371953	NM_000314.4	277	ACa/a																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602922	10602922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	90	858	0	ENST00000171111.5:c.656A>G	p.Glu219Gly	p.E219G	ENST00000171111	NM_203500.1	219	gAg/gGg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138198312	138198312	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	32	270	0	ENST00000237289.4:c.905T>A	p.Leu302His	p.L302H	ENST00000237289	NM_001270507.1	302	cTc/cAc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876449	35876449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2229232		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	181	620	0	ENST00000303115.3:c.1241C>T	p.Thr414Met	p.T414M	ENST00000303115	NM_002185.3	414	aCg/aTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41537184	41537184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	128	557	0	ENST00000263253.7:c.2011C>T	p.Pro671Ser	p.P671S	ENST00000263253	NM_001429.3	671	Cca/Tca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	197	760	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81606150	81606150	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373712078		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	94	485	1	ENST00000298171.2:c.820C>T	p.Arg274Trp	p.R274W	ENST00000298171	NM_000369.2	274	Cgg/Tgg																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	58	124	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	112	503	1	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	223	840	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372022	55372022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	180	645	3	ENST00000297316.4:c.712G>A	p.Ala238Thr	p.A238T	ENST00000297316	NM_022454.3	238	Gcc/Acc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs750808726		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	205	975	0	ENST00000261937.6:c.1267dup	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	77	805	6	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129329	152129329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	174	755	1	ENST00000206249.3:c.287del	p.Gly96ValfsTer13	p.G96Vfs*13	ENST00000206249	NM_000125.3	94	ctG/ct																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80343580	80343580	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	68	114	0	ENST00000286548.4:c.739C>T	p.Arg247Ter	p.R247*	ENST00000286548	NM_002072.3	247	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	230	784	6	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
AKT1	207	MSKCC	GRCh37	14	105243045	105243045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	238	933	0	ENST00000349310.3:c.238T>C	p.Trp80Arg	p.W80R	ENST00000349310	NM_001014432.1	80	Tgg/Cgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	227	852	2	ENST00000407977.2:c.349del	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18534801	18534801	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759595930		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	103	417	0	ENST00000266497.5:c.1859C>T	p.Pro620Leu	p.P620L	ENST00000266497		620	cCg/cTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106193849	106193850	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs777908833		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	82	296	0	ENST00000380013.4:c.4317dup	p.Arg1440ThrfsTer38	p.R1440Tfs*38	ENST00000380013	NM_001127208.2	1437	-/A																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	94	309	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	115	516	3	ENST00000268489.5:c.5677_5678del	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	172	614	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	120	440	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	140	465	0	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257770	16257770	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779103344		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	52	497	1	ENST00000375759.3:c.5035G>A	p.Val1679Ile	p.V1679I	ENST00000375759	NM_015001.2	1679	Gtc/Atc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540634	187540634	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201741692		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	87	338	0	ENST00000441802.2:c.7106C>T	p.Thr2369Met	p.T2369M	ENST00000441802	NM_005245.3	2369	aCg/aTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435777	56435777	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1055597951		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	167	595	0	ENST00000407977.2:c.1360C>T	p.Arg454Cys	p.R454C	ENST00000407977		454	Cgc/Tgc																																																																															
EP300	2033	MSKCC	GRCh37	22	41574664	41574664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	250	971	1	ENST00000263253.7:c.6949C>T	p.Arg2317Trp	p.R2317W	ENST00000263253	NM_001429.3	2317	Cgg/Tgg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	136	407	1	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
CIC	23152	MSKCC	GRCh37	19	42795609	42795609	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	265	927	1	ENST00000575354.2:c.2694del	p.Ala900ProfsTer24	p.A900Pfs*24	ENST00000575354	NM_015125.3	897	Ccc/cc																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981721	101981721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	37	358	0	ENST00000282441.5:c.147del	p.Ala50ProfsTer24	p.A50Pfs*24	ENST00000282441	NM_001130145.2	48	Ccc/cc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31368196	31368196	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367766007		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	228	866	0	ENST00000328111.2:c.67G>A	p.Val23Ile	p.V23I	ENST00000328111	NM_006892.3	23	Gtc/Atc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641388	23641388	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780820		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	168	723	0	ENST00000261584.4:c.2087C>T	p.Thr696Met	p.T696M	ENST00000261584	NM_024675.3	696	aCg/aTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	106	198	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
CUL3	8452	MSKCC	GRCh37	2	225360560	225360561	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	26	83	0	ENST00000264414.4:c.1830dup	p.Tyr611IlefsTer4	p.Y611Ifs*4	ENST00000264414	NM_003590.4	610	-/A																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128201212	128201212	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374025668		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	73	689	0	ENST00000265960.3:c.1523G>A	p.Arg508His	p.R508H	ENST00000265960	NM_001006617.1	508	cGt/cAt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2135297	2135297	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1332979299		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	233	813	1	ENST00000219476.3:c.4636G>A	p.Ala1546Thr	p.A1546T	ENST00000219476	NM_000548.3	1546	Gcc/Acc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	211	856	14	ENST00000382895.3:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382895	NM_133330.2	1341	Ccc/cc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90630711	90630711	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1339259178		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	189	599	2	ENST00000330062.3:c.775G>A	p.Asp259Asn	p.D259N	ENST00000330062	NM_002168.2	259	Gat/Aat																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806153	1806153	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28931615		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1244	33	1046	1	ENST00000260795.2:c.1172C>T	p.Ala391Val	p.A391V	ENST00000260795		391	gCg/gTg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17384726	17384726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368554117		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	205	750	1	ENST00000359435.4:c.358G>A	p.Ala120Thr	p.A120T	ENST00000359435	NM_001033549.1	120	Gcc/Acc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350059	89350059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	206	830	3	ENST00000301030.4:c.2891G>A	p.Gly964Asp	p.G964D	ENST00000301030	NM_001256183.1	964	gGc/gAc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959240	2959240	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148354898		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	161	674	0	ENST00000396946.4:c.2276G>A	p.Arg759Gln	p.R759Q	ENST00000396946	NM_032415.4	759	cGg/cAg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11027404	11027404	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868638712		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	283	1027	3	ENST00000327064.4:c.971C>T	p.Ser324Leu	p.S324L	ENST00000327064	NM_199141.1	324	tCg/tTg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166275	32166275	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs967436228		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	226	781	1	ENST00000375023.3:c.4679C>T	p.Ala1560Val	p.A1560V	ENST00000375023	NM_004557.3	1560	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425823	49425824	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs757932721		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	142	747	0	ENST00000301067.7:c.12662_12664dup	p.Gln4221dup	p.Q4221dup	ENST00000301067	NM_003482.3	4221	cta/cAGCta																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426973	49426973	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	184	747	3	ENST00000301067.7:c.11515del	p.Gln3839SerfsTer42	p.Q3839Sfs*42	ENST00000301067	NM_003482.3	3839	Cag/ag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470968	25470968	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1483397095		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	239	945	1	ENST00000264709.3:c.793G>A	p.Val265Met	p.V265M	ENST00000264709	NM_175629.2	265	Gtg/Atg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794899	242794899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	246	913	1	ENST00000334409.5:c.310C>T	p.Arg104Cys	p.R104C	ENST00000334409	NM_005018.2	104	Cgt/Tgt																																																																															
MST1	4485	MSKCC	GRCh37	3	49722238	49722238	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369252300		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	160	623	0	ENST00000449682.2:c.1702C>T	p.Arg568Trp	p.R568W	ENST00000449682	NM_020998.3	568	Cgg/Tgg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919939	50919939	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757190258		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	235	916	1	ENST00000440232.2:c.3026G>A	p.Arg1009His	p.R1009H	ENST00000440232	NM_002691.3	1009	cGc/cAc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25536804	25536804	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1299885148		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	271	955	5	ENST00000264709.3:c.50C>T	p.Ala17Val	p.A17V	ENST00000264709	NM_175629.2	17	gCg/gTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524600	187524600	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150034185		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	46	576	1	ENST00000441802.2:c.11080G>A	p.Val3694Ile	p.V3694I	ENST00000441802	NM_005245.3	3694	Gtc/Atc																																																																															
RARA	5914	MSKCC	GRCh37	17	38512297	38512297	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762998209		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	249	980	4	ENST00000254066.5:c.1208C>T	p.Pro403Leu	p.P403L	ENST00000254066	NM_000964.3	403	cCg/cTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821644	72821644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762700822		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	34	127	0	ENST00000268489.5:c.10531G>A	p.Gly3511Ser	p.G3511S	ENST00000268489	NM_006885.3	3511	Ggt/Agt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468108	50468108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750934235		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	50	512	1	ENST00000331340.3:c.1343C>T	p.Ala448Val	p.A448V	ENST00000331340	NM_006060.4	448	gCg/gTg																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84391521	84391521	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs542570943		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	79	170	0	ENST00000321945.7:c.311G>A	p.Arg104His	p.R104H	ENST00000321945	NM_139076.2	104	cGt/cAt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187710	11187710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	41	609	1	ENST00000361445.4:c.6187del	p.Gln2063ArgfsTer3	p.Q2063Rfs*3	ENST00000361445	NM_004958.3	2063	Cag/ag																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72076758	72076758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	39	582	0	ENST00000357731.5:c.739G>T	p.Gly247Cys	p.G247C	ENST00000357731	NM_173808.2	247	Ggt/Tgt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120512155	120512155	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	43	440	0	ENST00000256646.2:c.1087A>G	p.Met363Val	p.M363V	ENST00000256646	NM_024408.3	363	Atg/Gtg																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226253376	226253376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	63	208	0	ENST00000366813.1:c.148C>T	p.Arg50Cys	p.R50C	ENST00000366813		50	Cgt/Tgt																																																																															
SUFU	51684	MSKCC	GRCh37	10	104263922	104263922	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs948353979		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	30	110	0	ENST00000369902.3:c.13C>T	p.Arg5Trp	p.R5W	ENST00000369902	NM_016169.3	5	Cgg/Tgg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625177	69625177	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs281860305		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	84	907	0	ENST00000334134.2:c.616del	p.Val206SerfsTer?	p.V206Sfs*?	ENST00000334134	NM_005247.2	206	Gtc/tc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447013	49447013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	118	394	0	ENST00000301067.7:c.931C>T	p.Pro311Ser	p.P311S	ENST00000301067	NM_003482.3	311	Cct/Tct																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861960	57861960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	119	608	0	ENST00000228682.2:c.1261G>T	p.Gly421Cys	p.G421C	ENST00000228682	NM_005269.2	421	Ggt/Tgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133241948	133241948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	206	791	0	ENST00000320574.5:c.2408C>T	p.Ser803Leu	p.S803L	ENST00000320574	NM_006231.2	803	tCg/tTg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562867	21562867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	254	954	1	ENST00000382592.4:c.1052C>T	p.Ser351Leu	p.S351L	ENST00000382592	NM_014572.2	351	tCg/tTg																																																																															
RB1	5925	MSKCC	GRCh37	13	48954332	48954332	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	72	105	0	ENST00000267163.4:c.1453T>C	p.Ser485Pro	p.S485P	ENST00000267163	NM_000321.2	485	Tct/Cct																																																																															
MGA	23269	MSKCC	GRCh37	15	42050011	42050012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	33	97	0	ENST00000219905.7:c.7170dup	p.Ala2391SerfsTer3	p.A2391Sfs*3	ENST00000219905	NM_001164273.1	2389	gaa/gAaa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727458	88727459	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	171	617	0	ENST00000360948.2:c.320dup	p.Leu108AlafsTer30	p.L108Afs*30	ENST00000360948	NM_001012338.2	107	aag/aaAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778834	3778834	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1346068669		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	226	928	1	ENST00000262367.5:c.6214C>T	p.Arg2072Trp	p.R2072W	ENST00000262367	NM_004380.2	2072	Cgg/Tgg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647475	23647475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	124	414	0	ENST00000261584.4:c.392G>T	p.Arg131Met	p.R131M	ENST00000261584	NM_024675.3	131	aGg/aTg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50811799	50811799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	33	84	0	ENST00000398568.2:c.1076C>A	p.Ser359Tyr	p.S359Y	ENST00000398568	NM_001042412.1	359	tCt/tAt																																																																															
NUP93	9688	MSKCC	GRCh37	16	56865836	56865836	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747390049		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	117	357	2	ENST00000308159.5:c.1168G>A	p.Val390Met	p.V390M	ENST00000308159	NM_014669.4	390	Gtg/Atg																																																																															
CDH1	999	MSKCC	GRCh37	16	68772272	68772272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786202465		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	268	1027	0	ENST00000261769.5:c.121G>A	p.Val41Met	p.V41M	ENST00000261769	NM_004360.3	41	Gtg/Atg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346113	89346114	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	48	231	0	ENST00000301030.4:c.6836_6837del	p.Val2279GlyfsTer16	p.V2279Gfs*16	ENST00000301030	NM_001256183.1	2279	gTG/g																																																																															
NF1	4763	MSKCC	GRCh37	17	29701085	29701085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	148	401	0	ENST00000358273.4:c.8432G>A	p.Gly2811Glu	p.G2811E	ENST00000358273	NM_001042492.2	2811	gGa/gAa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37649063	37649063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	122	353	0	ENST00000447079.4:c.2168G>A	p.Cys723Tyr	p.C723Y	ENST00000447079	NM_015083.1	723	tGt/tAt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650861	37650861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	161	401	0	ENST00000447079.4:c.2333T>C	p.Leu778Pro	p.L778P	ENST00000447079	NM_015083.1	778	cTt/cCt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883558	37883558	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1198735577		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	215	784	0	ENST00000269571.5:c.3170G>A	p.Gly1057Glu	p.G1057E	ENST00000269571		1057	gGg/gAg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78858844	78858844	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199928822		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	218	856	0	ENST00000306801.3:c.1879G>A	p.Val627Met	p.V627M	ENST00000306801	NM_020761.2	627	Gtg/Atg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216398	2216398	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749779365		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	242	898	1	ENST00000398665.3:c.2042G>A	p.Arg681His	p.R681H	ENST00000398665	NM_032482.2	681	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210578	5210578	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1420539666		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	205	718	0	ENST00000357368.4:c.5389G>A	p.Glu1797Lys	p.E1797K	ENST00000357368	NM_002850.3	1797	Gag/Aag																																																																															
INSR	3643	MSKCC	GRCh37	19	7267524	7267524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	191	670	1	ENST00000302850.5:c.484C>T	p.Arg162Cys	p.R162C	ENST00000302850	NM_000208.2	162	Cgt/Tgt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10251522	10251522	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	57	787	0	ENST00000340748.4:c.3410C>A	p.Pro1137His	p.P1137H	ENST00000340748		1137	cCc/cAc																																																																															
CALR	811	MSKCC	GRCh37	19	13049581	13049581	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1199946705		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	182	783	0	ENST00000316448.5:c.88G>A	p.Gly30Arg	p.G30R	ENST00000316448	NM_004343.3	30	Gga/Aga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271945	15271945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	244	970	0	ENST00000263388.2:c.6494C>A	p.Pro2165His	p.P2165H	ENST00000263388	NM_000435.2	2165	cCt/cAt																																																																															
ERF	2077	MSKCC	GRCh37	19	42753419	42753419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	252	946	0	ENST00000222329.4:c.845C>T	p.Thr282Met	p.T282M	ENST00000222329	NM_006494.2	282	aCg/aTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905630	50905630	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1366413924		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	259	968	1	ENST00000440232.2:c.758G>A	p.Arg253Gln	p.R253Q	ENST00000440232	NM_002691.3	253	cGg/cAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030588	48030588	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63749843		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	73	364	0	ENST00000234420.5:c.3202C>T	p.Arg1068Ter	p.R1068*	ENST00000234420	NM_000179.2	1068	Cga/Tga																																																																															
BARD1	580	MSKCC	GRCh37	2	215609821	215609821	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	30	126	0	ENST00000260947.4:c.1873C>G	p.Leu625Val	p.L625V	ENST00000260947	NM_000465.2	625	Ctc/Gtc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660771	227660771	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs778801905		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	170	629	1	ENST00000305123.5:c.2684A>G	p.Glu895Gly	p.E895G	ENST00000305123	NM_005544.2	895	gAa/gGa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30733030	30733030	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755070814		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	111	466	2	ENST00000359013.4:c.1718C>T	p.Ser573Leu	p.S573L	ENST00000359013	NM_001024847.2	573	tCg/tTg																																																																															
MST1	4485	MSKCC	GRCh37	3	49721516	49721516	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	191	719	0	ENST00000449682.2:c.2123T>C	p.Phe708Ser	p.F708S	ENST00000449682	NM_020998.3	708	tTc/tCc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673821	30673821	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	99	444	0	ENST00000376406.3:c.3139G>C	p.Ala1047Pro	p.A1047P	ENST00000376406	NM_014641.2	1047	Gcc/Ccc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209409	98209409	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745337014		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	195	780	0	ENST00000331920.6:c.4129G>A	p.Val1377Met	p.V1377M	ENST00000331920	NM_000264.3	1377	Gtg/Atg																																																																															
MED12	9968	MSKCC	GRCh37	X	70344102	70344102	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	231	392	0	ENST00000374080.3:c.1838T>C	p.Met613Thr	p.M613T	ENST00000374080		613	aTg/aCg																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0041873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	136	398	1	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0041873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	394	934	1	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061137	38061167	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCCCGCTTCCGCTCCCGCCCCCGCCGCCG	GCCCCCGCTTCCGCTCCCGCCCCCGCCGCCG	-			P-0041955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	145	211	0	ENST00000250448.2:c.822_852del	p.Gly275AlafsTer36	p.G275Afs*36	ENST00000250448	NM_004496.3	274	gcCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGC/gc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641214	3641214	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs546657275		P-0041955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	318	1016	2	ENST00000294008.3:c.2425G>A	p.Glu809Lys	p.E809K	ENST00000294008	NM_032444.2	809	Gaa/Aaa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618903	37618952	+	frameshift_variant	Frame_Shift_Del	DEL	GCACAAAGACCGGAGTAAAAGTCATCGAAAAAGGGAAACACCCAAAAGTT	GCACAAAGACCGGAGTAAAAGTCATCGAAAAAGGGAAACACCCAAAAGTT	-			P-0041955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	192	710	0	ENST00000447079.4:c.579_628del	p.His194GlnfsTer19	p.H194Qfs*19	ENST00000447079	NM_015083.1	193	ggGCACAAAGACCGGAGTAAAAGTCATCGAAAAAGGGAAACACCCAAAAGTTac/ggac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	138	575	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0041956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	152	1194	1	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	374	622	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30108040	30108040	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs148748320		P-0042067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	202	849	0	ENST00000331968.5:c.767C>A	p.Pro256Gln	p.P256Q	ENST00000331968	NM_002742.2	256	cCa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577589	7577600	+	inframe_deletion	In_Frame_Del	DEL	GTGGTACAGTCA	GTGGTACAGTCA	-			P-0042067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	651	905	0	ENST00000269305.4:c.681_692del	p.Asp228_Thr231del	p.D228_T231del	ENST00000269305	NM_001126112.2	227	tcTGACTGTACCACc/tcc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201708	66201708	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	505	705	0	ENST00000273854.3:c.2794T>A	p.Leu932Met	p.L932M	ENST00000273854	NM_004439.5	932	Ttg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579508	7579508	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	199	927	0	ENST00000269305.4:c.179del	p.Pro60GlnfsTer63	p.P60Qfs*63	ENST00000269305	NM_001126112.2	60	cCa/ca																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37871746	37871746	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	209	864	0	ENST00000269571.5:c.1270G>T	p.Val424Phe	p.V424F	ENST00000269571		424	Gtc/Ttc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467173	99467193	+	inframe_deletion	In_Frame_Del	DEL	TGGCCGGAACCTGAGAATCCC	TGGCCGGAACCTGAGAATCCC	-			P-0042111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	47	495	0	ENST00000268035.6:c.2554_2574del	p.Trp852_Pro858del	p.W852_P858del	ENST00000268035	NM_000875.3	852	TGGCCGGAACCTGAGAATCCC/-																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905289	50905289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750144413		P-0042111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	248	1096	0	ENST00000440232.2:c.497G>A	p.Arg166Gln	p.R166Q	ENST00000440232	NM_002691.3	166	cGg/cAg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954272	32954273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs886038189		P-0042144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	147	451	0	ENST00000380152.3:c.9253dup	p.Thr3085AsnfsTer26	p.T3085Nfs*26	ENST00000380152		3082	-/A																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913409		P-0042144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	10	470	0	ENST00000349496.5:c.134C>G	p.Ser45Cys	p.S45C	ENST00000349496	NM_001904.3	45	tCt/tGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101378	27101378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	238	722	0	ENST00000324856.7:c.4660C>T	p.Pro1554Ser	p.P1554S	ENST00000324856	NM_006015.4	1554	Cca/Tca																																																																															
CCND2	894	MSKCC	GRCh37	12	4383342	4383342	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	129	889	0	ENST00000261254.3:c.136T>G	p.Cys46Gly	p.C46G	ENST00000261254	NM_001759.3	46	Tgc/Ggc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912080	32912081	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	256	765	0	ENST00000380152.3:c.3593dup	p.Asn1198LysfsTer2	p.N1198Kfs*2	ENST00000380152		1196	-/A																																																																															
CDK12	51755	MSKCC	GRCh37	17	37681066	37681066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	185	662	0	ENST00000447079.4:c.3235G>A	p.Val1079Met	p.V1079M	ENST00000447079	NM_015083.1	1079	Gtg/Atg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265783	41266198	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAG	TGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAG	-			P-0042144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	23	69	0	ENST00000349496.5:c.13+214_198del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56178601	56178601	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	124	351	0	ENST00000399503.3:c.3574G>C	p.Ala1192Pro	p.A1192P	ENST00000399503	NM_005921.1	1192	Gcc/Ccc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864377	162864377	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	141	594	0	ENST00000366898.1:c.136G>T	p.Ala46Ser	p.A46S	ENST00000366898	NM_004562.2	46	Gca/Tca																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205516	38205516	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	270	913	0	ENST00000317025.8:c.174G>C	p.Gln58His	p.Q58H	ENST00000317025	NM_023034.1	58	caG/caC																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978599	70978599	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	424	768	0	ENST00000276594.2:c.1054A>C	p.Ser352Arg	p.S352R	ENST00000276594	NM_024504.3	352	Agc/Cgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0042168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	60	489	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090868	5090868	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	25	231	0	ENST00000381652.3:c.3016G>T	p.Glu1006Ter	p.E1006*	ENST00000381652	NM_004972.3	1006	Gaa/Taa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610211	81610211	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	165	524	0	ENST00000298171.2:c.1809G>C	p.Lys603Asn	p.K603N	ENST00000298171	NM_000369.2	603	aaG/aaC																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119631590	119631590	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	147	440	0	ENST00000316626.5:c.676G>C	p.Glu226Gln	p.E226Q	ENST00000316626		226	Gag/Cag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176696616	176696616	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	76	302	0	ENST00000439151.2:c.5317G>C	p.Glu1773Gln	p.E1773Q	ENST00000439151	NM_022455.4	1773	Gag/Cag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922864	39922864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	160	652	0	ENST00000378444.4:c.3844C>G	p.Gln1282Glu	p.Q1282E	ENST00000378444	NM_001123385.1	1282	Caa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0042177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	108	314	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710585	114710585	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	286	710	2	ENST00000543371.1:c.70G>T	p.Glu24Ter	p.E24*	ENST00000543371	NM_001198531.1	24	Gag/Tag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478816	56478816	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	32	782	0	ENST00000267101.3:c.272T>C	p.Met91Thr	p.M91T	ENST00000267101	NM_001982.3	91	aTg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0042252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	335	432	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
MPL	4352	MSKCC	GRCh37	1	43817892	43817892	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	137	318	1	ENST00000372470.3:c.1571T>C	p.Leu524Pro	p.L524P	ENST00000372470	NM_005373.2	524	cTg/cCg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912189	114912189	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867720073		P-0042252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	291	317	2	ENST00000543371.1:c.1259G>A	p.Arg420Gln	p.R420Q	ENST00000543371	NM_001198531.1	420	cGg/cAg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060802	38060826	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGAGTAGTGGGGGTCCCCTTTCA	AAGGAGTAGTGGGGGTCCCCTTTCA	-			P-0042252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	191	647	0	ENST00000250448.2:c.1163_1187del	p.Leu388ProfsTer44	p.L388Pfs*44	ENST00000250448	NM_004496.3	388	cTGAAAGGGGACCCCCACTACTCCTTc/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952073	178952073	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519937		P-0042275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	66	315	0	ENST00000263967.3:c.3128T>C	p.Met1043Thr	p.M1043T	ENST00000263967	NM_006218.2	1043	aTg/aCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0042398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	361	333	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786202962		P-0042398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	512	697	2	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729606	41729606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	225	499	0	ENST00000242208.4:c.923G>A	p.Arg308His	p.R308H	ENST00000242208	NM_002192.2	308	cGt/cAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845397	151845397	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779339485		P-0042398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	146	596	1	ENST00000262189.6:c.13615G>A	p.Val4539Met	p.V4539M	ENST00000262189	NM_170606.2	4539	Gtg/Atg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983110	201983114	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAC	AGAAC	-			P-0042398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	327	708	0	ENST00000359651.3:c.961_965del	p.Asn321GlnfsTer148	p.N321Qfs*148	ENST00000359651		320	aAGAAC/a																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045953	26045953	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1325561730		P-0042398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	23	445	0	ENST00000540144.1:c.315C>G	p.Phe105Leu	p.F105L	ENST00000540144	NM_003531.2	105	ttC/ttG																																																																															
PREX2	80243	MSKCC	GRCh37	8	68930111	68930111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	89	342	0	ENST00000288368.4:c.172G>T	p.Ala58Ser	p.A58S	ENST00000288368	NM_024870.2	58	Gca/Tca																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0042405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	147	228	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579410	7579411	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0042405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	684	715	0	ENST00000269305.4:c.276_277del	p.Leu93ValfsTer55	p.L93Vfs*55	ENST00000269305	NM_001126112.2	92	ccCCtg/cctg																																																																															
CIC	23152	MSKCC	GRCh37	19	42799195	42799195	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	211	655	0	ENST00000575354.2:c.4679C>A	p.Thr1560Asn	p.T1560N	ENST00000575354	NM_015125.3	1560	aCc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0042420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	187	642	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0042420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	248	736	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275465	38275465	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	177	624	0	ENST00000425967.3:c.1568T>C	p.Val523Ala	p.V523A	ENST00000425967	NM_001174067.1	523	gTg/gCg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911895	32911895	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	130	439	0	ENST00000380152.3:c.3403del	p.Tyr1135ThrfsTer15	p.Y1135Tfs*15	ENST00000380152		1135	Tac/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882025		P-0042485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	184	900	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523348	9523348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	42	480	0	ENST00000353224.5:c.1889G>T	p.Gly630Val	p.G630V	ENST00000353224	NM_177990.2	630	gGg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0042489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	222	658	2	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0042489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	50	447	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609330	81609330	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121908882		P-0042489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	46	348	0	ENST00000298171.2:c.928C>T	p.Arg310Cys	p.R310C	ENST00000298171	NM_000369.2	310	Cgc/Tgc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15964992	15964992	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	80	643	0	ENST00000268712.3:c.5604G>C	p.Gln1868His	p.Q1868H	ENST00000268712	NM_006311.3	1868	caG/caC																																																																															
APC	324	MSKCC	GRCh37	5	112173607	112173608	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0042489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	24	300	0	ENST00000257430.4:c.2318_2319del	p.Phe773Ter	p.F773*	ENST00000257430	NM_000038.5	772	acTTtt/actt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911248	29911262	+	inframe_deletion	In_Frame_Del	DEL	TACCTGGATGGCACG	TACCTGGATGGCACG	-			P-0042489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	75	601	0	ENST00000376809.5:c.548_562del	p.Tyr183_Thr187del	p.Y183_T187del	ENST00000376809	NM_002116.7	183	TACCTGGATGGCACG/-																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101267	27101268	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	252	674	0	ENST00000324856.7:c.4555dup	p.Gln1519ProfsTer13	p.Q1519Pfs*13	ENST00000324856	NM_006015.4	1517	gcc/gCcc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797418	45797418	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	298	775	1	ENST00000372115.3:c.1059del	p.Arg354GlyfsTer40	p.R354Gfs*40	ENST00000372115	NM_001048171.1	353	ccC/cc																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205266	61205266	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753474292		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	252	533	0	ENST00000301761.2:c.206G>A	p.Arg69His	p.R69H	ENST00000301761	NM_017841.2	69	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108199953	108199953	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	32	168	0	ENST00000278616.4:c.7295T>C	p.Ile2432Thr	p.I2432T	ENST00000278616	NM_000051.3	2432	aTt/aCt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	106	171	1	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425348	49425349	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	353	872	0	ENST00000301067.7:c.13139dup	p.Asp4381ArgfsTer29	p.D4381Rfs*29	ENST00000301067	NM_003482.3	4380	cca/ccCa																																																																															
POLE	5426	MSKCC	GRCh37	12	133249213	133249213	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	239	538	0	ENST00000320574.5:c.1686G>T	p.Met562Ile	p.M562I	ENST00000320574	NM_006231.2	562	atG/atT																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	262	432	11	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2114280	2114280	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	307	650	0	ENST00000219476.3:c.1451T>C	p.Leu484Pro	p.L484P	ENST00000219476	NM_000548.3	484	cTg/cCg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	108	393	0	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23619279	23619279	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs587776527		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	241	663	0	ENST00000261584.4:c.3256C>T	p.Arg1086Ter	p.R1086*	ENST00000261584	NM_024675.3	1086	Cga/Tga																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81929493	81929493	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs746612517		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	240	555	0	ENST00000359376.3:c.1154T>C	p.Val385Ala	p.V385A	ENST00000359376	NM_002661.3	385	gTc/gCc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351004	89351004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	375	750	1	ENST00000301030.4:c.1946G>A	p.Ser649Asn	p.S649N	ENST00000301030	NM_001256183.1	649	aGc/aAc																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110505	8110505	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	168	396	0	ENST00000585124.1:c.387G>T	p.Gln129His	p.Q129H	ENST00000585124	NM_004217.3	129	caG/caT																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15973765	15973765	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	84	450	0	ENST00000268712.3:c.4227del	p.Pro1410LeufsTer18	p.P1410Lfs*18	ENST00000268712	NM_006311.3	1409	ggG/gg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16024417	16024417	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771531803		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	168	371	1	ENST00000268712.3:c.1801G>A	p.Ala601Thr	p.A601T	ENST00000268712	NM_006311.3	601	Gca/Aca																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16024476	16024476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	103	470	1	ENST00000268712.3:c.1742G>A	p.Arg581His	p.R581H	ENST00000268712	NM_006311.3	581	cGt/cAt																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	224	591	2	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370254	40370254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750053820		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	333	714	0	ENST00000293328.3:c.1084G>A	p.Val362Met	p.V362M	ENST00000293328	NM_012448.3	362	Gtg/Atg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	294	855	4	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39617669	39617669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	53	260	0	ENST00000262039.4:c.1853C>A	p.Pro618His	p.P618H	ENST00000262039	NM_002647.2	618	cCt/cAt																																																																															
INSR	3643	MSKCC	GRCh37	19	7125395	7125395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185736681		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	323	853	0	ENST00000302850.5:c.3157C>T	p.Arg1053Cys	p.R1053C	ENST00000302850	NM_000208.2	1053	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223614	36223614	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	363	938	1	ENST00000222270.7:c.6169del	p.Arg2057AlafsTer34	p.R2057Afs*34	ENST00000222270	NM_014727.1	2055	gCc/gc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	105	471	5	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
CIC	23152	MSKCC	GRCh37	19	42794440	42794440	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776806622		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	430	1017	0	ENST00000575354.2:c.1520G>A	p.Arg507His	p.R507H	ENST00000575354	NM_015125.3	507	cGc/cAc																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47606123	47606123	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	64	290	0	ENST00000263735.4:c.587T>C	p.Val196Ala	p.V196A	ENST00000263735	NM_002354.2	196	gTt/gCt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99152265	99152265	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	57	374	0	ENST00000074304.5:c.344T>C	p.Val115Ala	p.V115A	ENST00000074304	NM_001134224.1	115	gTc/gCc																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434182	12434182	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1187529076		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	203	439	1	ENST00000287820.6:c.556del	p.Ser186ValfsTer47	p.S186Vfs*47	ENST00000287820	NM_015869.4	184	Aaa/aa																																																																															
MST1R	4486	MSKCC	GRCh37	3	49932713	49932713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1156805771		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	367	784	1	ENST00000296474.3:c.3158G>A	p.Arg1053Gln	p.R1053Q	ENST00000296474	NM_002447.2	1053	cGg/cAg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52588784	52588784	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1368022648		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	247	604	0	ENST00000394830.3:c.4244A>G	p.His1415Arg	p.H1415R	ENST00000394830	NM_018313.4	1415	cAt/cGt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682400	52682400	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	174	292	0	ENST00000394830.3:c.773del	p.Asn258MetfsTer25	p.N258Mfs*25	ENST00000394830	NM_018313.4	258	aAt/at																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73047245	73047245	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	203	367	0	ENST00000356692.5:c.56del	p.Lys19ArgfsTer14	p.K19Rfs*14	ENST00000356692		18	Aaa/aa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468398	89468398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	82	242	0	ENST00000336596.2:c.1938del	p.Glu647ArgfsTer9	p.E647Rfs*9	ENST00000336596	NM_005233.5	644	tcA/tc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204873	128204873	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	356	913	1	ENST00000341105.2:c.568del	p.Ala190LeufsTer28	p.A190Lfs*28	ENST00000341105	NM_032638.4	190	Gct/ct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951929	178951929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	176	392	2	ENST00000263967.3:c.2984C>T	p.Ala995Val	p.A995V	ENST00000263967	NM_006218.2	995	gCc/gTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270105	66270105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	131	344	0	ENST00000273854.3:c.1777C>A	p.Leu593Ile	p.L593I	ENST00000273854	NM_004439.5	593	Ctc/Atc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535316	66535316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	226	846	3	ENST00000273854.3:c.145G>A	p.Ala49Thr	p.A49T	ENST00000273854	NM_004439.5	49	Gca/Aca																																																																															
TET2	54790	MSKCC	GRCh37	4	106157563	106157563	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	51	257	0	ENST00000380013.4:c.2464A>G	p.Thr822Ala	p.T822A	ENST00000380013	NM_001127208.2	822	Acc/Gcc																																																																															
TERT	7015	MSKCC	GRCh37	5	1268684	1268684	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	65	817	0	ENST00000310581.5:c.2533T>C	p.Cys845Arg	p.C845R	ENST00000310581	NM_198253.2	845	Tgc/Cgc																																																																															
APC	324	MSKCC	GRCh37	5	112163644	112163644	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	97	279	0	ENST00000257430.4:c.1567A>G	p.Lys523Glu	p.K523E	ENST00000257430	NM_000038.5	523	Aaa/Gaa																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	95	214	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	113	206	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131923673	131923673	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28903090		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	152	299	0	ENST00000265335.6:c.943G>T	p.Val315Leu	p.V315L	ENST00000265335		315	Gta/Tta																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518740	176518740	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1369223288		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	317	883	1	ENST00000292408.4:c.658G>A	p.Gly220Ser	p.G220S	ENST00000292408	NM_213647.1	220	Ggc/Agc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911117	29911117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1194	194	1005	0	ENST00000376809.5:c.416A>C	p.Gln139Pro	p.Q139P	ENST00000376809	NM_002116.7	139	cAg/cCg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323352	31323352	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1428341966		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	145	535	0	ENST00000412585.2:c.637G>A	p.Val213Met	p.V213M	ENST00000412585	NM_005514.6	213	Gtg/Atg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	151	562	1	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32164794	32164794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	281	584	0	ENST00000375023.3:c.5108C>T	p.Thr1703Ile	p.T1703I	ENST00000375023	NM_004557.3	1703	aCa/aTa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192411	138192411	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759654484		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	124	231	0	ENST00000237289.4:c.47G>A	p.Arg16Gln	p.R16Q	ENST00000237289	NM_001270507.1	16	cGg/cAg																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194824	29194824	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1347	397	1028	0	ENST00000240100.2:c.904A>G	p.Arg302Gly	p.R302G	ENST00000240100	NM_001394.6	302	Agg/Ggg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033246	69033246	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	222	532	0	ENST00000288368.4:c.3686T>A	p.Val1229Asp	p.V1229D	ENST00000288368	NM_024870.2	1229	gTc/gAc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70982011	70982011	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1342056205		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1342	161	1027	0	ENST00000276594.2:c.85T>C	p.Tyr29His	p.Y29H	ENST00000276594	NM_024504.3	29	Tac/Cac																																																																															
NBN	4683	MSKCC	GRCh37	8	90965738	90965738	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs104895031		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	157	194	0	ENST00000265433.3:c.1579G>T	p.Asp527Tyr	p.D527Y	ENST00000265433	NM_002485.4	527	Gat/Tat																																																																															
MYC	4609	MSKCC	GRCh37	8	128752960	128752960	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	204	458	0	ENST00000377970.2:c.1121A>G	p.His374Arg	p.H374R	ENST00000377970	NM_002467.4	374	cAc/cGc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741236	145741236	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1323	399	869	1	ENST00000428558.2:c.1170T>G	p.Phe390Leu	p.F390L	ENST00000428558	NM_004260.3	390	ttT/ttG																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907157	101907157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	74	293	0	ENST00000374994.4:c.1117G>A	p.Val373Met	p.V373M	ENST00000374994	NM_004612.2	373	Gtg/Atg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128305433	128305433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	262	565	1	ENST00000265960.3:c.863G>A	p.Gly288Glu	p.G288E	ENST00000265960	NM_001006617.1	288	gGa/gAa																																																																															
ABL1	25	MSKCC	GRCh37	9	133748300	133748300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	255	651	2	ENST00000318560.5:c.961G>A	p.Gly321Arg	p.G321R	ENST00000318560	NM_005157.4	321	Ggg/Agg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217291	7217315	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGTCCTCCAGGGCTCCCTAGAAAG	GTGTCCTCCAGGGCTCCCTAGAAAG	-			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	213	648	0	ENST00000380728.2:c.398-8_414del		p.X133_splice	ENST00000380728		133																																																																																
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0042554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	282	801	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0042554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	98	316	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
ERG	2078	MSKCC	GRCh37	21	39763593	39763593	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767696935		P-0042554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	53	382	1	ENST00000288319.7:c.859C>T	p.Arg287Cys	p.R287C	ENST00000288319	NM_182918.3	287	Cgt/Tgt																																																																															
ATR	545	MSKCC	GRCh37	3	142284971	142284971	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	63	474	0	ENST00000350721.4:c.284G>T	p.Ser95Ile	p.S95I	ENST00000350721	NM_001184.3	95	aGt/aTt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180646	56180677	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATGGCAGGTATGTTAATGTTTTAAATTACAA	GATGGCAGGTATGTTAATGTTTTAAATTACAA	-			P-0042554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	30	331	0	ENST00000399503.3:c.3975_3982+24del		p.X1325_splice	ENST00000399503	NM_005921.1	1325																																																																																
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0042628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	248	642	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0042628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	142	437	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710517	114710517	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0042628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	85	401	0	ENST00000543371.1:c.2T>A	p.Met1?	p.M1?	ENST00000543371	NM_001198531.1	1	aTg/aAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5239002	5239002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775100072		P-0042628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	345	766	1	ENST00000357368.4:c.1777C>T	p.Arg593Cys	p.R593C	ENST00000357368	NM_002850.3	593	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916948	178916950	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0042628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	165	369	0	ENST00000263967.3:c.337_339del	p.Leu113del	p.L113del	ENST00000263967	NM_006218.2	112	aTCCtc/atc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628066	90628066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	171	762	3	ENST00000330062.3:c.1253G>A	p.Cys418Tyr	p.C418Y	ENST00000330062	NM_002168.2	418	tGc/tAc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115269657	115269657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	138	598	0	ENST00000438362.2:c.1549G>A	p.Ala517Thr	p.A517T	ENST00000438362	NM_001242891.1	517	Gct/Act																																																																															
POLE	5426	MSKCC	GRCh37	12	133263888	133263888	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1167872104		P-0042628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	187	372	1	ENST00000320574.5:c.14G>A	p.Ser5Asn	p.S5N	ENST00000320574	NM_006231.2	5	aGc/aAc																																																																															
APC	324	MSKCC	GRCh37	5	112128141	112128141	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T	rs777848503		P-0042628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	153	258	0	ENST00000257430.4:c.646-2A>T		p.X216_splice	ENST00000257430	NM_000038.5	216																																																																																
MYC	4609	MSKCC	GRCh37	8	128750933	128750933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	251	505	0	ENST00000377970.2:c.470C>T	p.Ala157Val	p.A157V	ENST00000377970	NM_002467.4	157	gCc/gTc																																																																															
FANCC	2176	MSKCC	GRCh37	9	98009720	98009720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	78	275	0	ENST00000289081.3:c.244G>A	p.Ala82Thr	p.A82T	ENST00000289081	NM_000136.2	82	Gca/Aca																																																																															
ATRX	546	MSKCC	GRCh37	X	76875950	76875950	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	49	330	0	ENST00000373344.5:c.5185T>A	p.Ser1729Thr	p.S1729T	ENST00000373344	NM_000489.3	1729	Tct/Act																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419986	41419986	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372989163		P-0042629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	177	689	0	ENST00000373198.4:c.335G>A	p.Arg112His	p.R112H	ENST00000373198	NM_133170.3	112	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0042629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	158	659	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0042629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	216	565	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670339	134670339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1303716587		P-0042629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	165	551	1	ENST00000398015.3:c.250C>T	p.Arg84Cys	p.R84C	ENST00000398015	NM_004441.4	84	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0042629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	113	404	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	156	445	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0042630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	70	358	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106720	27106720	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770028290		P-0042630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	169	711	1	ENST00000324856.7:c.6331G>A	p.Val2111Ile	p.V2111I	ENST00000324856	NM_006015.4	2111	Gtc/Atc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591895	48591895	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	105	499	1	ENST00000342988.3:c.1058A>G	p.Tyr353Cys	p.Y353C	ENST00000342988	NM_005359.5	353	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs967461896		P-0042630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	377	797	4	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112173848	112173848	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	167	366	0	ENST00000257430.4:c.2557G>T	p.Glu853Ter	p.E853*	ENST00000257430	NM_000038.5	853	Gag/Tag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478921	56478921	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	247	848	4	ENST00000267101.3:c.377A>T	p.Asn126Ile	p.N126I	ENST00000267101	NM_001982.3	126	aAc/aTc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81934315	81934315	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367678289		P-0042630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	199	825	1	ENST00000359376.3:c.1292C>T	p.Thr431Met	p.T431M	ENST00000359376	NM_002661.3	431	aCg/aTg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36934816	36934816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	153	423	0	ENST00000361632.4:c.1517C>T	p.Pro506Leu	p.P506L	ENST00000361632		506	cCc/cTc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176104212	176104212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	53	244	0	ENST00000367669.3:c.902G>A	p.Gly301Asp	p.G301D	ENST00000367669	NM_022457.5	301	gGc/gAc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625435	69625435	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376445217		P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	117	535	0	ENST00000334134.2:c.358C>T	p.Arg120Trp	p.R120W	ENST00000334134	NM_005247.2	120	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108143570	108143570	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	65	284	0	ENST00000278616.4:c.3275C>G	p.Ser1092Ter	p.S1092*	ENST00000278616	NM_000051.3	1092	tCa/tGa																																																																															
ATM	472	MSKCC	GRCh37	11	108199916	108199916	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	56	192	0	ENST00000278616.4:c.7258G>C	p.Ala2420Pro	p.A2420P	ENST00000278616	NM_000051.3	2420	Gcc/Ccc																																																																															
CCND2	894	MSKCC	GRCh37	12	4409115	4409115	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	166	460	0	ENST00000261254.3:c.810G>C	p.Lys270Asn	p.K270N	ENST00000261254	NM_001759.3	270	aaG/aaC																																																																															
FLT3	2322	MSKCC	GRCh37	13	28601334	28601334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	38	334	0	ENST00000241453.7:c.2098C>T	p.Leu700Phe	p.L700F	ENST00000241453	NM_004119.2	700	Ctc/Ttc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727510	66727510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	238	416	0	ENST00000307102.5:c.226G>A	p.Ala76Thr	p.A76T	ENST00000307102	NM_002755.3	76	Gct/Act																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647419	23647419	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	44	448	0	ENST00000261584.4:c.448C>G	p.Gln150Glu	p.Q150E	ENST00000261584	NM_024675.3	150	Cag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577092	7577093	+	missense_variant	Missense_Mutation	DNP	CC	CC	GG			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	205	491	2	ENST00000269305.4:c.845_846inv	p.Arg282Pro	p.R282P	ENST00000269305	NM_001126112.2	282	cGG/cCC																																																																															
EZH1	2145	MSKCC	GRCh37	17	40865353	40865353	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1454055017		P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	61	547	0	ENST00000428826.2:c.1078C>T	p.Arg360Cys	p.R360C	ENST00000428826		360	Cgt/Tgt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210763	5210763	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	209	574	0	ENST00000357368.4:c.5288A>T	p.Asp1763Val	p.D1763V	ENST00000357368	NM_002850.3	1763	gAc/gTc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223164	5223164	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	55	553	0	ENST00000357368.4:c.2639C>G	p.Thr880Ser	p.T880S	ENST00000357368	NM_002850.3	880	aCc/aGc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244386	5244386	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	179	516	0	ENST00000357368.4:c.1096G>T	p.Glu366Ter	p.E366*	ENST00000357368	NM_002850.3	366	Gaa/Taa																																																																															
ATR	545	MSKCC	GRCh37	3	142259789	142259789	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	128	452	0	ENST00000350721.4:c.3538A>G	p.Thr1180Ala	p.T1180A	ENST00000350721	NM_001184.3	1180	Act/Gct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	101	383	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KDR	3791	MSKCC	GRCh37	4	55968640	55968640	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	143	430	1	ENST00000263923.4:c.2023A>T	p.Asn675Tyr	p.N675Y	ENST00000263923	NM_002253.2	675	Aat/Tat																																																																															
TERT	7015	MSKCC	GRCh37	5	1295182	1295182	+	upstream_gene_variant	5'Flank	SNP	A	A	T			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	72	202	0				ENST00000310581	NM_198253.2																																																																																	
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	106	275	0				ENST00000310581	NM_198253.2																																																																																	
RICTOR	253260	MSKCC	GRCh37	5	38962434	38962434	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	41	191	0	ENST00000357387.3:c.1698A>T	p.Lys566Asn	p.K566N	ENST00000357387	NM_152756.3	566	aaA/aaT																																																																															
APC	324	MSKCC	GRCh37	5	112175931	112175931	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	36	238	0	ENST00000257430.4:c.4643del	p.Asn1548ThrfsTer17	p.N1548Tfs*17	ENST00000257430	NM_000038.5	1547	gAa/ga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265479	152265479	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766779326		P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	144	520	1	ENST00000206249.3:c.932C>T	p.Thr311Met	p.T311M	ENST00000206249	NM_000125.3	311	aCg/aTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	68	393	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741153	145741153	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs548957135		P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	147	493	0	ENST00000428558.2:c.1253G>A	p.Arg418Gln	p.R418Q	ENST00000428558	NM_004260.3	418	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175934	112175934	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	41	228	0	ENST00000257430.4:c.4643A>T	p.Asn1548Ile	p.N1548I	ENST00000257430	NM_000038.5	1548	aAc/aTc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589818	28589818	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	174	577	0	ENST00000241453.7:c.2562G>C	p.Trp854Cys	p.W854C	ENST00000241453	NM_004119.2	854	tgG/tgC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578225	7578237	+	frameshift_variant	Frame_Shift_Del	DEL	GTCATCCAAATAC	GTCATCCAAATAC	-			P-0042759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	322	749	0	ENST00000269305.4:c.612_624del	p.Tyr205GlufsTer38	p.Y205Efs*38	ENST00000269305	NM_001126112.2	204	gaGTATTTGGATGAC/ga																																																																															
ROS1	6098	MSKCC	GRCh37	6	117725455	117725455	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	32	507	0	ENST00000368508.3:c.426G>T	p.Trp142Cys	p.W142C	ENST00000368508	NM_002944.2	142	tgG/tgT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023465	27023549	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCTGGAGCCCTACGCGGGGCCCCAGCAGAACTCTCACGACCACGGCTTCCCCAACCACCAGTACAACTCCTACTACCCCAACC	GGCCTGGAGCCCTACGCGGGGCCCCAGCAGAACTCTCACGACCACGGCTTCCCCAACCACCAGTACAACTCCTACTACCCCAACC	-			P-0042983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	127	588	0	ENST00000324856.7:c.572_656del	p.Gly191AlafsTer13	p.G191Afs*13	ENST00000324856	NM_006015.4	191	GGCCTGGAGCCCTACGCGGGGCCCCAGCAGAACTCTCACGACCACGGCTTCCCCAACCACCAGTACAACTCCTACTACCCCAACCgc/gc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023602	27023609	+	protein_altering_variant	In_Frame_Del	DEL	TGGCACTC	TGGCACTC	CG			P-0042983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	113	415	2	ENST00000324856.7:c.708_715delinsCG	p.Gly237_Pro239delinsAla	p.G237_P239delinsA	ENST00000324856	NM_006015.4	236	ggTGGCACTCcg/ggCGcg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	419049	419049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	13	670	0	ENST00000399788.2:c.3298G>A	p.Glu1100Lys	p.E1100K	ENST00000399788	NM_001042603.1	1100	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0042983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	25	542	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1131691025		P-0042983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	60	681	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591821	48591821	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	23	564	0	ENST00000342988.3:c.984C>A	p.Tyr328Ter	p.Y328*	ENST00000342988	NM_005359.5	328	taC/taA																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488657	212488657	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374970657		P-0042983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	19	522	0	ENST00000342788.4:c.2192C>T	p.Thr731Met	p.T731M	ENST00000342788	NM_005235.2	731	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112151191	112151191	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0042983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			11	15	424	0	ENST00000257430.4:c.835-1G>A		p.X279_splice	ENST00000257430	NM_000038.5	279																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157525016	157525016	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	21	458	0	ENST00000346085.5:c.4911G>A	p.Trp1637Ter	p.W1637*	ENST00000346085	NM_020732.3	1637	tgG/tgA																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225264		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	196	582	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11294268	11294268	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs879251235		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	228	652	0	ENST00000361445.4:c.2263C>T	p.Arg755Cys	p.R755C	ENST00000361445	NM_004958.3	755	Cgc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256462	16256462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	243	683	0	ENST00000375759.3:c.3727C>T	p.Arg1243Trp	p.R1243W	ENST00000375759	NM_015001.2	1243	Cgg/Tgg																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699492	117699493	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	102	448	0	ENST00000369458.3:c.148dup	p.Glu50GlyfsTer10	p.E50Gfs*10	ENST00000369458	NM_024626.3	50	gag/gGag																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851325	156851325	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	202	732	1	ENST00000524377.1:c.2285del	p.Gly762AlafsTer?	p.G762Afs*?	ENST00000524377	NM_002529.3	761	cGg/cg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206651613	206651613	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782254432		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	333	875	0	ENST00000367120.3:c.923G>A	p.Arg308Gln	p.R308Q	ENST00000367120	NM_014002.3	308	cGa/cAa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097701	8097702	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	63	502	0	ENST00000346208.3:c.86dup	p.Leu31ProfsTer22	p.L31Pfs*22	ENST00000346208		28	cac/caCc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8105989	8105989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	217	544	0	ENST00000346208.3:c.809C>T	p.Ser270Leu	p.S270L	ENST00000346208		270	tCg/tTg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88676897	88676897	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782682		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	218	553	0	ENST00000372037.3:c.682C>T	p.Arg228Ter	p.R228*	ENST00000372037	NM_004329.2	228	Cga/Tga																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683357	88683357	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201040		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	250	761	0	ENST00000372037.3:c.1480C>T	p.Arg494Ter	p.R494*	ENST00000372037	NM_004329.2	494	Cga/Tga																																																																															
WT1	7490	MSKCC	GRCh37	11	32456690	32456690	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	102	429	0	ENST00000332351.3:c.202C>T	p.Gln68Ter	p.Q68*	ENST00000332351	NM_024426.4	68	Caa/Taa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs767319284		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	167	680	4	ENST00000337652.1:c.1561dup	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	45	421	1	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																															
CBL	867	MSKCC	GRCh37	11	119170256	119170256	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374672276		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	130	371	1	ENST00000264033.4:c.2486G>A	p.Arg829Gln	p.R829Q	ENST00000264033	NM_005188.3	829	cGg/cAg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870961	12870962	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	117	445	0	ENST00000228872.4:c.192dup	p.Gln65SerfsTer60	p.Q65Sfs*60	ENST00000228872	NM_004064.3	63	gat/gaTt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	104	577	6	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46254721	46254721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	54	378	0	ENST00000334344.6:c.4911G>T	p.Gln1637His	p.Q1637H	ENST00000334344	NM_152641.2	1637	caG/caT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416495	49416495	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	54	665	1	ENST00000301067.7:c.16216A>G	p.Ile5406Val	p.I5406V	ENST00000301067	NM_003482.3	5406	Atc/Gtc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562427	21562427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	125	459	1	ENST00000382592.4:c.1492G>T	p.Gly498Cys	p.G498C	ENST00000382592	NM_014572.2	498	Ggc/Tgc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28895643	28895643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	39	602	0	ENST00000282397.4:c.3131C>T	p.Ala1044Val	p.A1044V	ENST00000282397	NM_002019.4	1044	gCc/gTc																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871633	35871634	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	116	383	0	ENST00000216797.5:c.872_873del	p.Thr291ArgfsTer15	p.T291Rfs*15	ENST00000216797	NM_020529.2	291	aCA/a																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343636	343636	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs544557159		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	274	910	2	ENST00000262320.3:c.2038C>T	p.Arg680Trp	p.R680W	ENST00000262320	NM_003502.3	680	Cgg/Tgg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3651016	3651016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	205	554	0	ENST00000294008.3:c.1127C>T	p.Ala376Val	p.A376V	ENST00000294008	NM_032444.2	376	gCa/gTa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900423	3900423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	253	755	1	ENST00000262367.5:c.673C>T	p.Pro225Ser	p.P225S	ENST00000262367	NM_004380.2	225	Ccg/Tcg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032029	10032029	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747214620		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	111	699	0	ENST00000330684.3:c.794C>T	p.Thr265Met	p.T265M	ENST00000330684	NM_001134407.1	265	aCg/aTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805074	89805074	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs74977201		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	192	704	1	ENST00000389301.3:c.4303G>A	p.Ala1435Thr	p.A1435T	ENST00000389301	NM_000135.2	1435	Gcc/Acc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217705	7217707	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs757139280		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	40	534	0	ENST00000380728.2:c.220_222del	p.Glu74del	p.E74del	ENST00000380728		74	GAG/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	67	813	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
NF1	4763	MSKCC	GRCh37	17	29554265	29554265	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786202504		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	155	493	0	ENST00000358273.4:c.2281G>A	p.Ala761Thr	p.A761T	ENST00000358273	NM_001042492.2	761	Gca/Aca																																																																															
NF1	4763	MSKCC	GRCh37	17	29687569	29687569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	198	689	1	ENST00000358273.4:c.8225A>G	p.Tyr2742Cys	p.Y2742C	ENST00000358273	NM_001042492.2	2742	tAc/tGc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30322639	30322639	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	176	583	0	ENST00000322652.5:c.1652T>C	p.Val551Ala	p.V551A	ENST00000322652	NM_015355.2	551	gTa/gCa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627500	37627501	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	103	599	0	ENST00000447079.4:c.1421dup	p.Asn474LysfsTer12	p.N474Kfs*12	ENST00000447079	NM_015083.1	472	gta/gtAa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37863252	37863252	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1284110310		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	62	636	3	ENST00000269571.5:c.83G>A	p.Gly28Asp	p.G28D	ENST00000269571		28	gGc/gAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866112	37866112	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	273	684	0	ENST00000269571.5:c.621G>T	p.Glu207Asp	p.E207D	ENST00000269571		207	gaG/gaT																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883113	37883113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780434636		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	229	852	1	ENST00000269571.5:c.3016C>T	p.Arg1006Cys	p.R1006C	ENST00000269571		1006	Cgc/Tgc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362446	40362447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1202978138		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	202	645	0	ENST00000293328.3:c.1749dup	p.His584ThrfsTer8	p.H584Tfs*8	ENST00000293328	NM_012448.3	583	-/A																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	200	827	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448293	56448293	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	231	747	0	ENST00000407977.2:c.354del	p.Cys119AlafsTer39	p.C119Afs*39	ENST00000407977		118	ccC/cc																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56780620	56780620	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200857129		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	178	584	1	ENST00000337432.4:c.635G>A	p.Arg212His	p.R212H	ENST00000337432	NM_058216.2	212	cGc/cAc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63545650	63545650	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747647668		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	157	528	1	ENST00000307078.5:c.944C>T	p.Thr315Met	p.T315M	ENST00000307078	NM_004655.3	315	aCg/aTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1297203260		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	130	547	0	ENST00000245479.2:c.916del	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221239	1221240	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	280	814	0	ENST00000326873.7:c.762_763insA	p.Phe255IlefsTer11	p.F255Ifs*11	ENST00000326873	NM_000455.4	254	-/A																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222967	5222967	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778392508		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	173	543	2	ENST00000357368.4:c.2836G>A	p.Val946Ile	p.V946I	ENST00000357368	NM_002850.3	946	Gtc/Atc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600446	10600446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	100	757	0	ENST00000171111.5:c.1409G>A	p.Arg470His	p.R470H	ENST00000171111	NM_203500.1	470	cGt/cAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602587	10602587	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1197443517		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	120	703	1	ENST00000171111.5:c.991G>A	p.Ala331Thr	p.A331T	ENST00000171111	NM_203500.1	331	Gcg/Acg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031345	11031345	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752773089		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	249	785	1	ENST00000327064.4:c.1345G>A	p.Asp449Asn	p.D449N	ENST00000327064	NM_199141.1	449	Gac/Aac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098351	11098351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763054014		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	167	545	0	ENST00000344626.4:c.869C>T	p.Ala290Val	p.A290V	ENST00000344626	NM_003072.3	290	gCg/gTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11136144	11136144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	289	785	0	ENST00000344626.4:c.3128G>A	p.Arg1043Gln	p.R1043Q	ENST00000344626	NM_003072.3	1043	cGg/cAg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15278138	15278138	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756495084		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	153	772	0	ENST00000263388.2:c.5284G>A	p.Val1762Met	p.V1762M	ENST00000263388	NM_000435.2	1762	Gtg/Atg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	220	862	1	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218419	36218419	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747829749		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	190	731	1	ENST00000222270.7:c.4198C>T	p.Arg1400Cys	p.R1400C	ENST00000222270	NM_014727.1	1400	Cgc/Tgc																																																																															
CIC	23152	MSKCC	GRCh37	19	42791001	42791001	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	195	651	0	ENST00000575354.2:c.146C>A	p.Pro49His	p.P49H	ENST00000575354	NM_015125.3	49	cCt/cAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42798406	42798406	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	231	804	0	ENST00000575354.2:c.4281del	p.Lys1428ArgfsTer26	p.K1428Rfs*26	ENST00000575354	NM_015125.3	1426	aCc/ac																																																																															
CIC	23152	MSKCC	GRCh37	19	42798778	42798815	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGGAGCTAGAGTATGACAAGGTGCCATACTCCTCCC	TGGGGAGCTAGAGTATGACAAGGTGCCATACTCCTCCC	-			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	55	710	1	ENST00000575354.2:c.4352_4389del	p.Gly1451AlafsTer50	p.G1451Afs*50	ENST00000575354	NM_015125.3	1450	ctTGGGGAGCTAGAGTATGACAAGGTGCCATACTCCTCCCtg/cttg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902266	50902268	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs766482335		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	75	877	8	ENST00000440232.2:c.169_171del	p.Glu57del	p.E57del	ENST00000440232	NM_002691.3	53	cAGGag/cag																																																																															
ALK	238	MSKCC	GRCh37	2	29436865	29436865	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	51	617	0	ENST00000389048.3:c.3728del	p.Asn1243ThrfsTer15	p.N1243Tfs*15	ENST00000389048	NM_004304.4	1243	aAc/ac																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027196	48027196	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	151	477	0	ENST00000234420.5:c.2079del	p.Lys693AsnfsTer43	p.K693Nfs*43	ENST00000234420	NM_000179.2	692	Aaa/aa																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128047329	128047329	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748503195		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	46	592	0	ENST00000285398.2:c.593G>A	p.Arg198His	p.R198H	ENST00000285398	NM_000122.1	198	cGc/cAc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198272772	198272772	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1360040192		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	178	650	0	ENST00000335508.6:c.1189C>T	p.Arg397Cys	p.R397C	ENST00000335508	NM_012433.2	397	Cgc/Tgc																																																																															
BARD1	580	MSKCC	GRCh37	2	215646085	215646085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	172	576	3	ENST00000260947.4:c.513del	p.Asp172MetfsTer40	p.D172Mfs*40	ENST00000260947	NM_000465.2	171	aaA/aa																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795061	242795061	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1203794937		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	65	939	0	ENST00000334409.5:c.148G>A	p.Ala50Thr	p.A50T	ENST00000334409	NM_005018.2	50	Gcc/Acc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9543581	9543581	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	242	666	0	ENST00000353224.5:c.1573T>G	p.Phe525Val	p.F525V	ENST00000353224	NM_177990.2	525	Ttt/Gtt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827927	40827927	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs536150112		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	208	624	1	ENST00000373198.4:c.2501G>A	p.Arg834His	p.R834H	ENST00000373198	NM_133170.3	834	cGc/cAc																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961325	54961325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	40	598	1	ENST00000312783.6:c.307C>T	p.Pro103Ser	p.P103S	ENST00000312783	NM_198436.1	103	Cca/Tca																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165283	47165283	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	37	397	0	ENST00000409792.3:c.843del	p.Glu282LysfsTer19	p.E282Kfs*19	ENST00000409792	NM_014159.6	281	aaA/aa																																																																															
MITF	4286	MSKCC	GRCh37	3	69990415	69990415	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764477527		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	88	409	0	ENST00000352241.4:c.695G>A	p.Ser232Asn	p.S232N	ENST00000352241	NM_198159.2	232	aGc/aAc																																																																															
ATR	545	MSKCC	GRCh37	3	142281238	142281238	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886058056		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	85	497	1	ENST00000350721.4:c.1006C>T	p.Arg336Trp	p.R336W	ENST00000350721	NM_001184.3	336	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	50	697	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519941		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	19	372	0	ENST00000263967.3:c.1031T>C	p.Val344Ala	p.V344A	ENST00000263967	NM_006218.2	344	gTg/gCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	132	380	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185198179	185198179	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	217	597	0	ENST00000265026.3:c.2661C>G	p.Asp887Glu	p.D887E	ENST00000265026	NM_004721.4	887	gaC/gaG																																																																															
TET2	54790	MSKCC	GRCh37	4	106164772	106164772	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761811530		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	197	553	0	ENST00000380013.4:c.3640C>T	p.Arg1214Trp	p.R1214W	ENST00000380013	NM_001127208.2	1214	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	21	272	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518216	187518216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	179	415	0	ENST00000441802.2:c.12478C>T	p.Arg4160Cys	p.R4160C	ENST00000441802	NM_005245.3	4160	Cgt/Tgt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	92	388	1	ENST00000303115.3:c.361del	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	282	574	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86670061	86670061	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	139	419	0	ENST00000274376.6:c.1858C>A	p.Leu620Met	p.L620M	ENST00000274376	NM_002890.2	620	Ctg/Atg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149456995	149456995	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41338945		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	155	467	0	ENST00000286301.3:c.733G>A	p.Ala245Thr	p.A245T	ENST00000286301	NM_005211.3	245	Gca/Aca																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721847	176721847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	192	575	2	ENST00000439151.2:c.7478C>T	p.Ala2493Val	p.A2493V	ENST00000439151	NM_022455.4	2493	gCc/gTc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797707	32797707	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	183	521	0	ENST00000374899.4:c.1795G>T	p.Asp599Tyr	p.D599Y	ENST00000374899	NM_018833.2	599	Gat/Tat																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805738	32805739	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	170	708	0	ENST00000374899.4:c.272dup	p.Ala92SerfsTer75	p.A92Sfs*75	ENST00000374899	NM_018833.2	91	cca/ccCa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508793	106508793	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370152741		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	170	681	0	ENST00000359195.3:c.787G>A	p.Glu263Lys	p.E263K	ENST00000359195	NM_002649.2	263	Gaa/Aaa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	159	475	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538819	23538819	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764325622		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	184	509	0	ENST00000380871.4:c.620G>A	p.Arg207Gln	p.R207Q	ENST00000380871	NM_006167.3	207	cGg/cAg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271163	38271163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs17182456		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	148	562	0	ENST00000425967.3:c.2545G>A	p.Gly849Arg	p.G849R	ENST00000425967	NM_001174067.1	849	Gga/Aga																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964427	70964427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	219	555	0	ENST00000276594.2:c.1601G>A	p.Ser534Asn	p.S534N	ENST00000276594	NM_024504.3	534	aGc/aAc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741649	145741649	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1292831710		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	242	802	0	ENST00000428558.2:c.854del	p.Pro285HisfsTer8	p.P285Hfs*8	ENST00000428558	NM_004260.3	285	cCa/ca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	181	511	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971156	21971156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	148	519	0	ENST00000304494.5:c.202G>A	p.Ala68Thr	p.A68T	ENST00000304494	NM_000077.4	68	Gcg/Acg																																																																															
ABL1	25	MSKCC	GRCh37	9	133750371	133750372	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	201	639	0	ENST00000318560.5:c.1206dup	p.Ile403HisfsTer42	p.I403Hfs*42	ENST00000318560	NM_005157.4	401	ttc/ttCc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409991	139409991	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	265	866	0	ENST00000277541.6:c.1847del	p.Gly616AlafsTer15	p.G616Afs*15	ENST00000277541	NM_017617.3	616	gGc/gc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410102	139410102	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1458789810		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	262	798	0	ENST00000277541.6:c.1736C>T	p.Ser579Phe	p.S579F	ENST00000277541	NM_017617.3	579	tCc/tTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417475	139417475	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761616770		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	66	778	4	ENST00000277541.6:c.569G>A	p.Arg190His	p.R190H	ENST00000277541	NM_017617.3	190	cGc/cAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	58	722	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411530	63411530	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	277	874	0	ENST00000330258.3:c.1637del	p.Leu546CysfsTer16	p.L546Cfs*16	ENST00000330258	NM_152424.3	546	tTg/tg																																																																															
AXL	558	MSKCC	GRCh37	19	41744405	41744405	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043035-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			268	160	644	0	ENST00000301178.4:c.1025C>A	p.Ala342Asp	p.A342D	ENST00000301178	NM_021913.4	342	gCt/gAt																																																																															
RRAS	6237	MSKCC	GRCh37	19	50143285	50143285	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043035-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			133	21	159	0	ENST00000246792.3:c.71C>A	p.Pro24His	p.P24H	ENST00000246792	NM_006270.3	24	cCc/cAc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175861	24175861	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043035-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			269	16	511	0	ENST00000263121.7:c.1089G>C	p.Lys363Asn	p.K363N	ENST00000263121	NM_003073.3	363	aaG/aaC																																																																															
RASA1	5921	MSKCC	GRCh37	5	86627241	86627241	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs752280214		P-0043035-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			163	38	298	0	ENST00000274376.6:c.616A>G	p.Ile206Val	p.I206V	ENST00000274376	NM_002890.2	206	Ata/Gta																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370864	55370864	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs757881222		P-0043035-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	34	407	0	ENST00000297316.4:c.166G>T	p.Ala56Ser	p.A56S	ENST00000297316	NM_022454.3	56	Gcc/Tcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0043118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	258	603	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0043118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	205	433	1	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151877869	151877887	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGGTCCAGGAAGTTGGG	ACAGGTCCAGGAAGTTGGG	-			P-0043118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	101	343	0	ENST00000262189.6:c.7058_7076del	p.Ser2353CysfsTer6	p.S2353Cfs*6	ENST00000262189	NM_170606.2	2353	tCCCAACTTCCTGGACCTGTg/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0043582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	11	690	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0043582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	23	707	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	273	627	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467386	66467386	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	82	179	0	ENST00000273854.3:c.883T>C	p.Tyr295His	p.Y295H	ENST00000273854	NM_004439.5	295	Tat/Cat																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720828	89720828	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	41	174	0	ENST00000371953.3:c.981del	p.Ala328GlnfsTer16	p.A328Qfs*16	ENST00000371953	NM_000314.4	327	Aaa/aa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18499655	18499655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	100	374	0	ENST00000266497.5:c.1510G>T	p.Asp504Tyr	p.D504Y	ENST00000266497		504	Gat/Tat																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67459123	67459123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	145	878	0	ENST00000327367.4:c.539C>A	p.Pro180Gln	p.P180Q	ENST00000327367	NM_005902.3	180	cCa/cAa																																																																															
YES1	7525	MSKCC	GRCh37	18	739732	739733	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0043655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	94	266	0	ENST00000314574.4:c.1137+2dup		p.X379_splice	ENST00000314574	NM_005433.3	379																																																																																
NFKBIA	4792	MSKCC	GRCh37	14	35871349	35872208	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAATAACTCTTGGACTCCATTCTCCATAGCCCAAATATAATGAACTTTACAGGCTGAGAGAGTTTGCCTTTAATGCTTCTCTTTAAAAAAAGAGGGGGGGCAGGTACATTCTTGGGATACTGGTTATGCACAGAAATTTGAGAGACTCATTATGTAGATACCCCTCTGATAAGGAGCAGCTCTAGGGGCCTGGGAGGGTGAAGGGAATGGCACCTCATTAGTTAGAGCGCCGAAGGAGTTCACAGACTCACCTCGTCCTCTGTGAACTCCGTGAACTCTGACTCTGTGTCATAGCTCTCCTCATCCTCACTCTCTGGCAGCATCTGAAGGTTTTCTAGTGTCAGCTGGCCCAGCTGCTGCTGTATCCGGGTGCTTGGGCGGCCCCAGGTGAGCTGGTAGGGAGAATAGCCCTGGTAGGTAACTCTGTTGACATCAGCCCCACACTTCAACAGGAGTGACACCAGGTCAGGATTTTGCAGGTCCACTGCGAGGTGAAGGGCAGTCCGGCCATTACAGGGCTCCTGAAACCAAAAGGAATTTGAGATGCTTATGGCTGCATTTGGAATTTCTGCTCACAACATAAGCACGAGGAGCCTGACTCAGTGCGTCGGGGGCAGGAAGCACCAACCTGAGCATTGACATCAGCACCCAAGGACACCAAAAGCTCCACGATGCCCAGGTAGCCATGGATAGAGGCTAAGTGTAGACACGTGTGGCCTGGAAGAACAAAAGGAAAAAAGTATAACCACCTGTTTCAACCCTCACTCCTTTCACCTATTCTTTTATGGAACAAGTAGTCTTATCTTCTGAATTTTAAGAACCCACAGTCTGGGTTCTGAAAGAACTTTATAAAGGCATCC	AAATAACTCTTGGACTCCATTCTCCATAGCCCAAATATAATGAACTTTACAGGCTGAGAGAGTTTGCCTTTAATGCTTCTCTTTAAAAAAAGAGGGGGGGCAGGTACATTCTTGGGATACTGGTTATGCACAGAAATTTGAGAGACTCATTATGTAGATACCCCTCTGATAAGGAGCAGCTCTAGGGGCCTGGGAGGGTGAAGGGAATGGCACCTCATTAGTTAGAGCGCCGAAGGAGTTCACAGACTCACCTCGTCCTCTGTGAACTCCGTGAACTCTGACTCTGTGTCATAGCTCTCCTCATCCTCACTCTCTGGCAGCATCTGAAGGTTTTCTAGTGTCAGCTGGCCCAGCTGCTGCTGTATCCGGGTGCTTGGGCGGCCCCAGGTGAGCTGGTAGGGAGAATAGCCCTGGTAGGTAACTCTGTTGACATCAGCCCCACACTTCAACAGGAGTGACACCAGGTCAGGATTTTGCAGGTCCACTGCGAGGTGAAGGGCAGTCCGGCCATTACAGGGCTCCTGAAACCAAAAGGAATTTGAGATGCTTATGGCTGCATTTGGAATTTCTGCTCACAACATAAGCACGAGGAGCCTGACTCAGTGCGTCGGGGGCAGGAAGCACCAACCTGAGCATTGACATCAGCACCCAAGGACACCAAAAGCTCCACGATGCCCAGGTAGCCATGGATAGAGGCTAAGTGTAGACACGTGTGGCCTGGAAGAACAAAAGGAAAAAAGTATAACCACCTGTTTCAACCCTCACTCCTTTCACCTATTCTTTTATGGAACAAGTAGTCTTATCTTCTGAATTTTAAGAACCCACAGTCTGGGTTCTGAAAGAACTTTATAAAGGCATCC	-			P-0043684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	89	80	0	ENST00000216797.5:c.548-143_907-83del		p.X183_splice	ENST00000216797	NM_020529.2	183																																																																																
TP53	7157	MSKCC	GRCh37	17	7579339	7579339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	284	423	0	ENST00000269305.4:c.348del	p.Thr118GlnfsTer5	p.T118Qfs*5	ENST00000269305	NM_001126112.2	116	tcT/tc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49935008	49935008	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs535567428		P-0043684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	286	480	1	ENST00000296474.3:c.1991C>T	p.Pro664Leu	p.P664L	ENST00000296474	NM_002447.2	664	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0043710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	110	226	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0043710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	219	459	1	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913237		P-0043710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	213	273	0	ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112174154	112174154	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	118	279	0	ENST00000257430.4:c.2863G>T	p.Glu955Ter	p.E955*	ENST00000257430	NM_000038.5	955	Gaa/Taa																																																																															
AR	367	MSKCC	GRCh37	X	66765620	66765620	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370893700		P-0043710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	163	726	1	ENST00000374690.3:c.632C>T	p.Ala211Val	p.A211V	ENST00000374690	NM_000044.3	211	gCg/gTg																																																																															
SDHD	6392	MSKCC	GRCh37	11	111959732	111959732	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	236	478	0	ENST00000375549.3:c.311A>G	p.His104Arg	p.H104R	ENST00000375549	NM_003002.3	104	cAc/cGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	13	246	1	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	30	249	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247367	153247367	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs747241612		P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	38	203	0	ENST00000281708.4:c.1435C>G	p.Arg479Gly	p.R479G	ENST00000281708	NM_033632.3	479	Cga/Gga																																																																															
APC	324	MSKCC	GRCh37	5	112175756	112175756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	69	157	0	ENST00000257430.4:c.4466del	p.Leu1489TyrfsTer18	p.L1489Yfs*18	ENST00000257430	NM_000038.5	1489	Tta/ta																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38282215	38282215	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	68	431	0	ENST00000425967.3:c.841C>T	p.Arg281Trp	p.R281W	ENST00000425967	NM_001174067.1	281	Cgg/Tgg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7989385	7989385	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200663524		P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	83	638	1	ENST00000319144.4:c.301G>A	p.Ala101Thr	p.A101T	ENST00000319144	NM_001139.2	101	Gcc/Acc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625252	69625252	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782761826		P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	63	662	0	ENST00000334134.2:c.541C>T	p.Arg181Cys	p.R181C	ENST00000334134	NM_005247.2	181	Cgc/Tgc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431404	121431404	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780357		P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	71	517	0	ENST00000257555.6:c.608G>A	p.Arg203His	p.R203H	ENST00000257555		203	cGt/cAt																																																																															
JUN	3725	MSKCC	GRCh37	1	59248215	59248216	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	15	23	0	ENST00000371222.2:c.527dup	p.Asn177GlnfsTer133	p.N177Qfs*133	ENST00000371222	NM_002228.3	176	ttc/ttTc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900969	114900969	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	37	342	0	ENST00000543371.1:c.581del	p.Pro194LeufsTer31	p.P194Lfs*31	ENST00000543371	NM_001198531.1	193	caC/ca																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983936	15983936	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	40	237	0	ENST00000268712.3:c.3283G>T	p.Glu1095Ter	p.E1095*	ENST00000268712	NM_006311.3	1095	Gaa/Taa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120159	70120160	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	35	319	0	ENST00000245479.2:c.1163_1164dup	p.Pro389SerfsTer15	p.P389Sfs*15	ENST00000245479	NM_000346.3	387	-/GA																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46268713	46268713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	67	363	0	ENST00000371998.3:c.2998C>A	p.Gln1000Lys	p.Q1000K	ENST00000371998		1000	Caa/Aaa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589204	67589221	+	inframe_deletion	In_Frame_Del	DEL	TTCAGTTCTGTGGTTGAA	TTCAGTTCTGTGGTTGAA	-			P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	59	201	0	ENST00000274335.5:c.1194_1211del	p.Phe398_Glu403del	p.F398_E403del	ENST00000274335		398	TTCAGTTCTGTGGTTGAA/-																																																																															
CDKN2B-AS1	100048912	MSKCC	GRCh37	9	21994246	21994246	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1316222103		P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	40	504	0				ENST00000428597																																																																																		
PPP6C	5537	MSKCC	GRCh37	9	127915929	127915929	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	56	311	0	ENST00000373547.4:c.552A>T	p.Glu184Asp	p.E184D	ENST00000373547	NM_002721.4	184	gaA/gaT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039297	47039297	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	82	591	0	ENST00000329236.7:c.689T>C	p.Leu230Pro	p.L230P	ENST00000329236	NM_001204466.1	230	cTg/cCg																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0043732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	76	263	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0043732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	3272	635	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
APC	324	MSKCC	GRCh37	5	112175630	112175630	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	64	255	0	ENST00000257430.4:c.4339del	p.Gln1447LysfsTer26	p.Q1447Kfs*26	ENST00000257430	NM_000038.5	1447	Caa/aa																																																																															
EP300	2033	MSKCC	GRCh37	22	41553260	41553260	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	155	448	0	ENST00000263253.7:c.3349T>G	p.Tyr1117Asp	p.Y1117D	ENST00000263253	NM_001429.3	1117	Tat/Gat																																																																															
HGF	3082	MSKCC	GRCh37	7	81386614	81386614	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	37	262	0	ENST00000222390.5:c.373A>T	p.Ile125Phe	p.I125F	ENST00000222390	NM_000601.4	125	Att/Ttt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0043735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	140	221	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0043811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	342	138	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519997		P-0043811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	329	636	0	ENST00000269305.4:c.332T>C	p.Leu111Pro	p.L111P	ENST00000269305	NM_001126112.2	111	cTg/cCg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753334	42753334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2103	132	862	0	ENST00000222329.4:c.930G>A	p.Met310Ile	p.M310I	ENST00000222329	NM_006494.2	310	atG/atA																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39607453	39607453	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	108	151	0	ENST00000262039.4:c.1531C>G	p.Pro511Ala	p.P511A	ENST00000262039	NM_002647.2	511	Cca/Gca																																																																															
ERF	2077	MSKCC	GRCh37	19	42752709	42752709	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1273385423		P-0043811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1814	112	722	0	ENST00000222329.4:c.1555G>T	p.Gly519Trp	p.G519W	ENST00000222329	NM_006494.2	519	Ggg/Tgg																																																																															
ERF	2077	MSKCC	GRCh37	19	42752865	42752865	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1862	115	702	0	ENST00000222329.4:c.1399G>C	p.Glu467Gln	p.E467Q	ENST00000222329	NM_006494.2	467	Gag/Cag																																																																															
ERF	2077	MSKCC	GRCh37	19	42753672	42753672	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2069	132	764	0	ENST00000222329.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000222329	NM_006494.2	198	Gaa/Taa																																																																															
CCND3	896	MSKCC	GRCh37	6	41909291	41909291	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778979671		P-0043811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2228	535	514	0	ENST00000372991.4:c.97C>T	p.Arg33Cys	p.R33C	ENST00000372991	NM_001760.3	33	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0043934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	647	572	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	275	396	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0043934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	82	226	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120239	70120239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	670	560	0	ENST00000245479.2:c.1241C>A	p.Ser414Ter	p.S414*	ENST00000245479	NM_000346.3	414	tCg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112174213	112174214	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	96	304	0	ENST00000257430.4:c.2926dup	p.Arg976LysfsTer9	p.R976Kfs*9	ENST00000257430	NM_000038.5	974	-/A																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323270	31323273	+	frameshift_variant	Frame_Shift_Del	DEL	GTCA	GTCA	-			P-0043934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	110	245	0	ENST00000412585.2:c.716_719del	p.Leu239ProfsTer57	p.L239Pfs*57	ENST00000412585	NM_005514.6	239	cTGACc/cc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105562	27105563	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	146	436	0	ENST00000324856.7:c.5175dup	p.Glu1726Ter	p.E1726*	ENST00000324856	NM_006015.4	1725	att/aTtt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435901	49435901	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	176	681	0	ENST00000301067.7:c.6080A>G	p.Asn2027Ser	p.N2027S	ENST00000301067	NM_003482.3	2027	aAt/aGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879504	151879504	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	153	378	0	ENST00000262189.6:c.5441C>G	p.Pro1814Arg	p.P1814R	ENST00000262189	NM_170606.2	1814	cCt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	73	291	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0044008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	59	239	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916946	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0044008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	105	358	0	ENST00000263967.3:c.332_334del	p.Lys111del	p.K111del	ENST00000263967	NM_006218.2	111	AAG/-																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0044008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	102	238	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	313	682	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986559	36986560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	34	479	0	ENST00000354822.5:c.1129dup	p.Leu377ProfsTer62	p.L377Pfs*62	ENST00000354822	NM_001079668.2	377	ctg/cCtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0044137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	201	822	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	366	435	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248357	212248357	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs879163362		P-0044137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	26	245	0	ENST00000342788.4:c.3910C>T	p.Arg1304Trp	p.R1304W	ENST00000342788	NM_005235.2	1304	Cgg/Tgg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112455	115112455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	102	779	0	ENST00000257566.3:c.1285G>A	p.Asp429Asn	p.D429N	ENST00000257566	NM_016569.3	429	Gac/Aac																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185190850	185190851	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0044137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	203	791	1	ENST00000265026.3:c.1731_1732del	p.Ser578Ter	p.S578*	ENST00000265026	NM_004721.4	577	acTTct/acct																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974739	21974753	+	inframe_deletion	In_Frame_Del	DEL	CCCGCACCTCCTCTA	CCCGCACCTCCTCTA	-			P-0044137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	86	398	0	ENST00000304494.5:c.74_88del	p.Val25_Arg29del	p.V25_R29del	ENST00000304494	NM_000077.4	25	gTAGAGGAGGTGCGGGcg/gcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0044259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	82	632	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	58	376	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0044259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	63	372	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42054525	42054525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	54	355	0	ENST00000219905.7:c.7709C>T	p.Pro2570Leu	p.P2570L	ENST00000219905	NM_001164273.1	2570	cCt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0044318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	148	403	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030314	180030314	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777755208		P-0044318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	374	692	1	ENST00000261937.6:c.3970C>T	p.Arg1324Trp	p.R1324W	ENST00000261937	NM_182925.4	1324	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175417	112175418	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0044318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	118	292	0	ENST00000257430.4:c.4127_4128del	p.Tyr1376CysfsTer9	p.Y1376Cfs*9	ENST00000257430	NM_000038.5	1376	TAt/t																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508557	106508557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	121	332	0	ENST00000359195.3:c.551G>A	p.Arg184His	p.R184H	ENST00000359195	NM_002649.2	184	cGc/cAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939512	71939512	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	206	795	0	ENST00000298229.2:c.367C>G	p.Pro123Ala	p.P123A	ENST00000298229	NM_001567.3	123	Ccg/Gcg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444238	49444238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	414	906	0	ENST00000301067.7:c.3133C>T	p.Pro1045Ser	p.P1045S	ENST00000301067	NM_003482.3	1045	Cct/Tct																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260163	19260163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	195	704	0	ENST00000162023.5:c.130G>A	p.Ala44Thr	p.A44T	ENST00000162023		44	Gcc/Acc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750520	41750520	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	220	513	0	ENST00000226382.2:c.108C>A	p.Cys36Ter	p.C36*	ENST00000226382	NM_003924.3	36	tgC/tgA																																																																															
TEK	7010	MSKCC	GRCh37	9	27206709	27206709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	168	518	0	ENST00000380036.4:c.2494G>A	p.Glu832Lys	p.E832K	ENST00000380036	NM_000459.3	832	Gag/Aag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390984	139390984	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	644	835	0	ENST00000277541.6:c.7207C>T	p.Gln2403Ter	p.Q2403*	ENST00000277541	NM_017617.3	2403	Cag/Tag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	69	304	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	35	198	1	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	408	518	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	67	356	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	73	230	6	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	180	513	0	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	103	285	1	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913253	39913253	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	118	405	2	ENST00000378444.4:c.4862del	p.Pro1621GlnfsTer53	p.P1621Qfs*53	ENST00000378444	NM_001123385.1	1621	cCa/ca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921567	178921567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	34	212	0	ENST00000263967.3:c.1049A>G	p.Asp350Gly	p.D350G	ENST00000263967	NM_006218.2	350	gAc/gGc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	182	281	0	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	86	590	4	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	106	317	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161324	55161324	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514550		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	87	321	0	ENST00000257290.5:c.3155C>T	p.Thr1052Met	p.T1052M	ENST00000257290	NM_006206.4	1052	aCg/aTg																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	72	403	4	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	85	295	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524468	187524469	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	127	446	0	ENST00000441802.2:c.11211_11212del	p.Cys3738ArgfsTer12	p.C3738Rfs*12	ENST00000441802	NM_005245.3	3737	ctCTgc/ctgc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228172	53228172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	187	444	0	ENST00000375401.3:c.2230C>T	p.Arg744Trp	p.R744W	ENST00000375401	NM_004187.3	744	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928065	178928065	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	55	388	0	ENST00000263967.3:c.1343T>C	p.Val448Ala	p.V448A	ENST00000263967	NM_006218.2	448	gTa/gCa																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	104	461	3	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																															
ATM	472	MSKCC	GRCh37	11	108106399	108106399	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs146382972		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	18	98	0	ENST00000278616.4:c.334G>A	p.Ala112Thr	p.A112T	ENST00000278616	NM_000051.3	112	Gca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447773	49447773	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	29	437	1	ENST00000301067.7:c.661del	p.Ala221LeufsTer40	p.A221Lfs*40	ENST00000301067	NM_003482.3	221	Gct/ct																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7982767	7982767	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	193	481	1	ENST00000319144.4:c.1018del	p.Leu340SerfsTer12	p.L340Sfs*12	ENST00000319144	NM_001139.2	340	Ctc/tc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18958623	18958623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	77	491	0	ENST00000262803.5:c.442C>T	p.Arg148Cys	p.R148C	ENST00000262803	NM_002911.3	148	Cgt/Tgt																																																																															
PMS2	5395	MSKCC	GRCh37	7	6035163	6035163	+	splice_donor_variant	Splice_Site	SNP	A	A	G	rs878854059		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	81	296	0	ENST00000265849.7:c.903+2T>C		p.X301_splice	ENST00000265849	NM_000535.5	301																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151884466	151884466	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1435892915		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	60	286	0	ENST00000262189.6:c.4889C>T	p.Ser1630Leu	p.S1630L	ENST00000262189	NM_170606.2	1630	tCg/tTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435231	49435231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	186	485	0	ENST00000301067.7:c.6322C>T	p.Pro2108Ser	p.P2108S	ENST00000301067	NM_003482.3	2108	Ccg/Tcg																																																																															
IRF4	3662	MSKCC	GRCh37	6	393321	393321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	324	362	0	ENST00000380956.4:c.169G>A	p.Ala57Thr	p.A57T	ENST00000380956	NM_001195286.1	57	Gcg/Acg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17948745	17948745	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	201	539	0	ENST00000458235.1:c.1697T>C	p.Met566Thr	p.M566T	ENST00000458235	NM_000215.3	566	aTg/aCg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485747	57485747	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	110	306	0	ENST00000371085.3:c.1048A>G	p.Thr350Ala	p.T350A	ENST00000371085	NM_000516.4	350	Act/Gct																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346092	152346092	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144079294		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	73	399	0	ENST00000359321.1:c.478G>A	p.Val160Ile	p.V160I	ENST00000359321	NM_005431.1	160	Gtc/Atc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987066	36987066	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1325836054		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	182	443	0	ENST00000354822.5:c.623G>A	p.Arg208Gln	p.R208Q	ENST00000354822	NM_001079668.2	208	cGa/cAa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910265	50910265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	200	491	0	ENST00000440232.2:c.1520G>A	p.Arg507His	p.R507H	ENST00000440232	NM_002691.3	507	cGc/cAc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910710	29910710	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199474419		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	196	666	0	ENST00000376809.5:c.250T>C	p.Trp84Arg	p.W84R	ENST00000376809	NM_002116.7	84	Tgg/Cgg																																																																															
AR	367	MSKCC	GRCh37	X	66765409	66765409	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs865948546		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	173	525	2	ENST00000374690.3:c.421G>A	p.Ala141Thr	p.A141T	ENST00000374690	NM_000044.3	141	Gcc/Acc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11276216	11276216	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	60	342	0	ENST00000361445.4:c.3106A>G	p.Thr1036Ala	p.T1036A	ENST00000361445	NM_004958.3	1036	Acc/Gcc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259631	16259631	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	140	415	0	ENST00000375759.3:c.6896A>G	p.Lys2299Arg	p.K2299R	ENST00000375759	NM_015001.2	2299	aAg/aGg																																																																															
CDC42	998	MSKCC	GRCh37	1	22413043	22413043	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	36	186	0	ENST00000344548.3:c.288+2T>C		p.X96_splice	ENST00000344548	NM_001039802.1	96																																																																																
CSDE1	7812	MSKCC	GRCh37	1	115276463	115276463	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs908936569		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	48	415	0	ENST00000438362.2:c.865A>G	p.Thr289Ala	p.T289A	ENST00000438362	NM_001242891.1	289	Aca/Gca																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120471638	120471638	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	97	345	0	ENST00000256646.2:c.3853A>G	p.Thr1285Ala	p.T1285A	ENST00000256646	NM_024408.3	1285	Acc/Gcc																																																																															
RET	5979	MSKCC	GRCh37	10	43617442	43617442	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	83	360	0	ENST00000355710.3:c.2779A>G	p.Ile927Val	p.I927V	ENST00000355710	NM_020975.4	927	Atc/Gtc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63817033	63817033	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	37	214	0	ENST00000279873.7:c.1004G>T	p.Arg335Met	p.R335M	ENST00000279873	NM_032199.2	335	aGg/aTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133219152	133219152	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775590365		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	200	535	0	ENST00000320574.5:c.4892G>A	p.Arg1631His	p.R1631H	ENST00000320574	NM_006231.2	1631	cGc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133237623	133237623	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	136	497	0	ENST00000320574.5:c.2992A>G	p.Thr998Ala	p.T998A	ENST00000320574	NM_006231.2	998	Acg/Gcg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438006	110438006	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs778487451		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	74	202	0	ENST00000375856.3:c.395A>G	p.Gln132Arg	p.Q132R	ENST00000375856	NM_003749.2	132	cAg/cGg																																																																															
BLM	641	MSKCC	GRCh37	15	91292700	91292700	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	69	373	1	ENST00000355112.3:c.202A>G	p.Thr68Ala	p.T68A	ENST00000355112	NM_000057.2	68	Acc/Gcc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396244	396244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	170	506	0	ENST00000262320.3:c.782C>T	p.Ala261Val	p.A261V	ENST00000262320	NM_003502.3	261	gCt/gTt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2115611	2115611	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	169	523	0	ENST00000219476.3:c.1691T>C	p.Val564Ala	p.V564A	ENST00000219476	NM_000548.3	564	gTc/gCc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858274	9858274	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	42	311	0	ENST00000330684.3:c.3127A>G	p.Thr1043Ala	p.T1043A	ENST00000330684	NM_001134407.1	1043	Acc/Gcc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983346	15983346	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	87	330	0	ENST00000268712.3:c.3433A>G	p.Thr1145Ala	p.T1145A	ENST00000268712	NM_006311.3	1145	Act/Gct																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688767	47688767	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1340081446		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	89	366	0	ENST00000347630.2:c.533T>C	p.Met178Thr	p.M178T	ENST00000347630	NM_001007230.1	178	aTg/aCg																																																																															
MSI2	124540	MSKCC	GRCh37	17	55752465	55752465	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1382332810		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	268	587	0	ENST00000284073.2:c.923C>T	p.Ser308Leu	p.S308L	ENST00000284073	NM_138962.2	308	tCg/tTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591898	48591898	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	69	377	0	ENST00000342988.3:c.1061T>C	p.Val354Ala	p.V354A	ENST00000342988	NM_005359.5	354	gTg/gCg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604717	48604717	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	96	339	0	ENST00000342988.3:c.1541del	p.Pro514GlnfsTer23	p.P514Qfs*23	ENST00000342988	NM_005359.5	513	taC/ta																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212423	5212423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768007031		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	234	522	2	ENST00000357368.4:c.4694C>T	p.Thr1565Met	p.T1565M	ENST00000357368	NM_002850.3	1565	aCg/aTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244010	5244010	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	234	575	0	ENST00000357368.4:c.1472T>C	p.Leu491Pro	p.L491P	ENST00000357368	NM_002850.3	491	cTg/cCg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244091	5244091	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	52	609	0	ENST00000357368.4:c.1391A>G	p.Tyr464Cys	p.Y464C	ENST00000357368	NM_002850.3	464	tAc/tGc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10252754	10252754	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	155	489	0	ENST00000340748.4:c.3211T>C	p.Cys1071Arg	p.C1071R	ENST00000340748		1071	Tgc/Cgc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170549	11170549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	199	518	0	ENST00000344626.4:c.4756T>C	p.Ser1586Pro	p.S1586P	ENST00000344626	NM_003072.3	1586	Tcc/Ccc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288814	15288814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	37	83	0	ENST00000263388.2:c.3925C>T	p.Arg1309Cys	p.R1309C	ENST00000263388	NM_000435.2	1309	Cgc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298023	15298023	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745672629		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	231	594	0	ENST00000263388.2:c.1733G>A	p.Arg578His	p.R578H	ENST00000263388	NM_000435.2	578	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227851	36227851	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	192	590	0	ENST00000222270.7:c.7336C>T	p.Arg2446Ter	p.R2446*	ENST00000222270	NM_014727.1	2446	Cga/Tga																																																																															
AKT2	208	MSKCC	GRCh37	19	40741956	40741956	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	189	629	0	ENST00000392038.2:c.1016T>C	p.Val339Ala	p.V339A	ENST00000392038	NM_001626.4	339	gTc/gCc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905632	50905632	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	207	550	0	ENST00000440232.2:c.758+2T>C		p.X253_splice	ENST00000440232	NM_002691.3	253																																																																																
EPCAM	4072	MSKCC	GRCh37	2	47596682	47596682	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs776646187		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	112	207	0	ENST00000263735.4:c.38T>C	p.Leu13Pro	p.L13P	ENST00000263735	NM_002354.2	13	cTt/cCt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662187	227662187	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs141882284		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	215	624	0	ENST00000305123.5:c.1268G>T	p.Gly423Val	p.G423V	ENST00000305123	NM_005544.2	423	gGc/gTc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524438	44524438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	55	230	0	ENST00000291552.4:c.119C>T	p.Pro40Leu	p.P40L	ENST00000291552	NM_006758.2	40	cCg/cTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266904	41266904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	82	325	0	ENST00000349496.5:c.575C>A	p.Pro192His	p.P192H	ENST00000349496	NM_001904.3	192	cCt/cAt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670327	134670328	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	26	356	0	ENST00000398015.3:c.244dup	p.Ala82GlyfsTer20	p.A82Gfs*20	ENST00000398015	NM_004441.4	80	cgg/cGgg																																																																															
ATR	545	MSKCC	GRCh37	3	142231159	142231159	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	116	377	0	ENST00000350721.4:c.4795C>G	p.Leu1599Val	p.L1599V	ENST00000350721	NM_001184.3	1599	Ctg/Gtg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185198036	185198036	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1374039394		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	56	268	0	ENST00000265026.3:c.2518A>G	p.Ser840Gly	p.S840G	ENST00000265026	NM_004721.4	840	Agc/Ggc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467473	66467473	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	70	257	0	ENST00000273854.3:c.796T>A	p.Ser266Thr	p.S266T	ENST00000273854	NM_004439.5	266	Tct/Act																																																																															
TET2	54790	MSKCC	GRCh37	4	106157084	106157084	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	91	378	0	ENST00000380013.4:c.1985T>A	p.Phe662Tyr	p.F662Y	ENST00000380013	NM_001127208.2	662	tTc/tAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332775	153332777	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	91	421	0	ENST00000281708.4:c.179_181del	p.Val60del	p.V60del	ENST00000281708	NM_033632.3	60	gTTGga/gga																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515123	31515123	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	44	466	0	ENST00000344624.3:c.1262A>G	p.Tyr421Cys	p.Y421C	ENST00000344624		421	tAc/tGc																																																																															
NPM1	4869	MSKCC	GRCh37	5	170818747	170818747	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	14	265	0	ENST00000296930.5:c.296T>C	p.Val99Ala	p.V99A	ENST00000296930	NM_002520.6	99	gTc/gCc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910783	29910783	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs281864743		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	75	430	0	ENST00000376809.5:c.323A>G	p.Tyr108Cys	p.Y108C	ENST00000376809	NM_002116.7	108	tAc/tGc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323958	31323959	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	109	367	0	ENST00000412585.2:c.604_605del	p.Lys202AlafsTer5	p.K202Afs*5	ENST00000412585	NM_005514.6	202	AAg/g																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004499	150004499	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	116	504	0	ENST00000253339.5:c.1726A>T	p.Ile576Phe	p.I576F	ENST00000253339		576	Atc/Ttc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152420051	152420051	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	132	392	0	ENST00000206249.3:c.1738C>T	p.Gln580Ter	p.Q580*	ENST00000206249	NM_000125.3	580	Caa/Taa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864373	162864373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	108	355	0	ENST00000366898.1:c.140G>T	p.Gly47Val	p.G47V	ENST00000366898	NM_004562.2	47	gGg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873371	151873371	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	75	252	0	ENST00000262189.6:c.9167A>G	p.Gln3056Arg	p.Q3056R	ENST00000262189	NM_170606.2	3056	cAg/cGg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209559	98209559	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs761753681		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	148	480	0	ENST00000331920.6:c.3979A>G	p.Thr1327Ala	p.T1327A	ENST00000331920	NM_000264.3	1327	Act/Gct																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20150350	20150350	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	81	285	0	ENST00000379607.5:c.287A>G	p.Asn96Ser	p.N96S	ENST00000379607	NM_001412.3	96	aAt/aGt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411314	63411314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	152	544	1	ENST00000330258.3:c.1853C>T	p.Ala618Val	p.A618V	ENST00000330258	NM_152424.3	618	gCt/gTt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	24	383	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073643	8073643	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	38	473	1	ENST00000377482.5:c.1016del	p.Pro339ArgfsTer113	p.P339Rfs*113	ENST00000377482	NM_018948.3	339	cCg/cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0044472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	39	255	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0044472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	43	516	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs926053251		P-0044472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	67	507	1	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0044472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	42	241	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	13	259	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0044472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	26	280	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0044472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	21	266	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112173912	112173912	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	18	276	0	ENST00000257430.4:c.2621C>A	p.Ser874Ter	p.S874*	ENST00000257430	NM_000038.5	874	tCa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0044566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	173	275	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	304	383	1	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857679	9857679	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs886042648		P-0044566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	97	296	0	ENST00000330684.3:c.3722G>A	p.Arg1241Gln	p.R1241Q	ENST00000330684	NM_001134407.1	1241	cGg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151893008	151893008	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	76	181	0	ENST00000262189.6:c.4362del	p.Lys1454AsnfsTer30	p.K1454Nfs*30	ENST00000262189	NM_170606.2	1454	aaA/aa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858150	9858150	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	134	397	1	ENST00000330684.3:c.3251A>G	p.Asp1084Gly	p.D1084G	ENST00000330684	NM_001134407.1	1084	gAc/gGc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979533	7979533	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs144747081		P-0044566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	321	424	0	ENST00000319144.4:c.1492T>C	p.Tyr498His	p.Y498H	ENST00000319144	NM_001139.2	498	Tac/Cac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151893012	151893012	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	81	188	0	ENST00000262189.6:c.4358C>G	p.Ala1453Gly	p.A1453G	ENST00000262189	NM_170606.2	1453	gCa/gGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0044601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	26	686	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	59	494	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821956	72821956	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	21	322	0	ENST00000268489.5:c.10219del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3407	Gct/ct																																																																															
ATM	472	MSKCC	GRCh37	11	108225571	108225572	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0044601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	42	386	0	ENST00000278616.4:c.8823_8824del	p.Gln2942GlyfsTer13	p.Q2942Gfs*13	ENST00000278616	NM_000051.3	2940	aaCTct/aact																																																																															
MGA	23269	MSKCC	GRCh37	15	42035227	42035227	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	87	677	0	ENST00000219905.7:c.5070del	p.Ala1691LeufsTer8	p.A1691Lfs*8	ENST00000219905	NM_001164273.1	1690	gTt/gt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11182104	11182104	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181023452		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	129	694	0	ENST00000361445.4:c.6742G>A	p.Ala2248Thr	p.A2248T	ENST00000361445	NM_004958.3	2248	Gcc/Acc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11270918	11270918	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	102	476	0	ENST00000361445.4:c.3607C>T	p.Arg1203Ter	p.R1203*	ENST00000361445	NM_004958.3	1203	Cga/Tga																																																																															
CDC42	998	MSKCC	GRCh37	1	22412996	22412996	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	39	160	0	ENST00000344548.3:c.247del	p.Ser83GlnfsTer11	p.S83Qfs*11	ENST00000344548	NM_001039802.1	81	tgT/tg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28607287	28607287	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778863205		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	127	575	0	ENST00000253063.3:c.1417C>T	p.Arg473Cys	p.R473C	ENST00000253063	NM_031459.4	473	Cgt/Tgt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36938213	36938213	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	130	877	0	ENST00000361632.4:c.748C>T	p.Gln250Ter	p.Q250*	ENST00000361632		250	Cag/Tag																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78426155	78426155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	56	363	0	ENST00000370768.2:c.1370C>A	p.Pro457His	p.P457H	ENST00000370768	NM_003902.3	457	cCt/cAt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838326	156838326	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	143	943	0	ENST00000524377.1:c.604A>G	p.Asn202Asp	p.N202D	ENST00000524377	NM_002529.3	202	Aat/Gat																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843449	156843449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764645590		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	104	666	0	ENST00000524377.1:c.875C>T	p.Thr292Met	p.T292M	ENST00000524377	NM_002529.3	292	aCg/aTg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176085808	176085810	+	inframe_deletion	In_Frame_Del	DEL	AAT	AAT	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	70	386	0	ENST00000367669.3:c.976_978del	p.Ile326del	p.I326del	ENST00000367669	NM_022457.5	326	ATT/-																																																																															
CDC73	79577	MSKCC	GRCh37	1	193218980	193218980	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1465509067		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	51	276	0	ENST00000367435.3:c.1538G>A	p.Arg513Gln	p.R513Q	ENST00000367435	NM_024529.4	513	cGg/cAg																																																																															
FH	2271	MSKCC	GRCh37	1	241680543	241680543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	70	458	0	ENST00000366560.3:c.206G>A	p.Gly69Asp	p.G69D	ENST00000366560	NM_000143.3	69	gGc/gAc																																																																															
RET	5979	MSKCC	GRCh37	10	43601893	43601893	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057521089		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	138	778	1	ENST00000355710.3:c.937C>T	p.Arg313Trp	p.R313W	ENST00000355710	NM_020975.4	313	Cgg/Tgg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692884	89692884	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121909222		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	69	373	0	ENST00000371953.3:c.368A>G	p.His123Arg	p.H123R	ENST00000371953	NM_000314.4	123	cAc/cGc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	69	433	1	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104309777	104309777	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745958724		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	139	633	1	ENST00000369902.3:c.368G>A	p.Arg123His	p.R123H	ENST00000369902	NM_016169.3	123	cGt/cAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	185	485	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123247593	123247593	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	75	485	2	ENST00000358487.5:c.1898del	p.Leu633TrpfsTer2	p.L633Wfs*2	ENST00000358487	NM_000141.4	633	tTg/tg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129325	64129325	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs376604355		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	97	746	1	ENST00000334205.4:c.757C>T	p.Arg253Trp	p.R253W	ENST00000334205	NM_003942.2	253	Cgg/Tgg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	52	429	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588869	69588869	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766381502		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	91	756	1	ENST00000168712.1:c.367C>T	p.Arg123Trp	p.R123W	ENST00000168712	NM_002007.2	123	Cgg/Tgg																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125514026	125514026	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775909758		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	83	500	1	ENST00000428830.2:c.964C>T	p.Arg322Cys	p.R322C	ENST00000428830	NM_001114121.2	322	Cgc/Tgc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	459885	459885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	124	755	0	ENST00000399788.2:c.1210G>A	p.Asp404Asn	p.D404N	ENST00000399788	NM_001042603.1	404	Gat/Aat																																																																															
RECQL	5965	MSKCC	GRCh37	12	21626494	21626494	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	72	484	0	ENST00000421138.2:c.1438A>G	p.Lys480Glu	p.K480E	ENST00000421138		480	Aaa/Gaa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21628716	21628716	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755679996		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	68	417	0	ENST00000421138.2:c.992C>T	p.Thr331Met	p.T331M	ENST00000421138		331	aCg/aTg																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944842	31944842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	145	819	0	ENST00000340398.3:c.259G>A	p.Ala87Thr	p.A87T	ENST00000340398	NM_001013699.2	87	Gca/Aca																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245470	46245470	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	61	376	0	ENST00000334344.6:c.3564T>G	p.Ser1188Arg	p.S1188R	ENST00000334344	NM_152641.2	1188	agT/agG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434959	49434959	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	91	698	0	ENST00000301067.7:c.6594del	p.Tyr2199IlefsTer65	p.Y2199Ifs*65	ENST00000301067	NM_003482.3	2198	ccC/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445203	49445203	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	125	961	4	ENST00000301067.7:c.2263del	p.Arg755GlyfsTer175	p.R755Gfs*175	ENST00000301067	NM_003482.3	755	Cgg/gg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432040	121432040	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771108132		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	155	947	3	ENST00000257555.6:c.787C>T	p.Arg263Cys	p.R263C	ENST00000257555		263	Cgt/Tgt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	114	769	3	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712700	43712700	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1282655302		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	161	893	0	ENST00000382044.4:c.4484G>A	p.Arg1495His	p.R1495H	ENST00000382044	NM_001141980.1	1495	cGt/cAt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423579	88423579	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	89	657	0	ENST00000360948.2:c.2256T>G	p.Asp752Glu	p.D752E	ENST00000360948	NM_001012338.2	752	gaT/gaG																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	166	828	2	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434635	99434635	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148823172		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	140	681	0	ENST00000268035.6:c.722C>T	p.Ala241Val	p.A241V	ENST00000268035	NM_000875.3	241	gCg/gTg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465555	99465555	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753047347		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	94	580	1	ENST00000268035.6:c.2380C>T	p.Arg794Trp	p.R794W	ENST00000268035	NM_000875.3	794	Cgg/Tgg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121909	2121909	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760489473		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	154	931	2	ENST00000219476.3:c.2071C>T	p.Arg691Cys	p.R691C	ENST00000219476	NM_000548.3	691	Cgc/Tgc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222371	2222371	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1419349453		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	100	849	0	ENST00000326181.6:c.655C>T	p.Arg219Trp	p.R219W	ENST00000326181	NM_032271.2	219	Cgg/Tgg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779560	3779560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	134	1090	0	ENST00000262367.5:c.5488G>A	p.Ala1830Thr	p.A1830T	ENST00000262367	NM_004380.2	1830	Gcc/Acc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3832927	3832927	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	20	372	0	ENST00000262367.5:c.1331C>T	p.Thr444Ile	p.T444I	ENST00000262367	NM_004380.2	444	aCc/aTc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50811827	50811827	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	69	422	0	ENST00000398568.2:c.1109del	p.Asn370IlefsTer35	p.N370Ifs*35	ENST00000398568	NM_001042412.1	368	tcA/tc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56875638	56875638	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1239777742		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	27	463	0	ENST00000308159.5:c.2242G>A	p.Val748Met	p.V748M	ENST00000308159	NM_014669.4	748	Gtg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821906	72821908	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-	rs767338198		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	66	390	0	ENST00000268489.5:c.10267_10269del	p.Glu3423del	p.E3423del	ENST00000268489	NM_006885.3	3423	GAA/-																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829368	72829368	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201280219		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	111	704	0	ENST00000268489.5:c.7213G>A	p.Ala2405Thr	p.A2405T	ENST00000268489	NM_006885.3	2405	Gct/Act																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944126	81944126	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1324356186		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	80	540	0	ENST00000359376.3:c.1735C>T	p.Arg579Trp	p.R579W	ENST00000359376	NM_002661.3	579	Cgg/Tgg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15960943	15960943	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs575750270		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	71	382	0	ENST00000268712.3:c.6277G>A	p.Val2093Met	p.V2093M	ENST00000268712	NM_006311.3	2093	Gtg/Atg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	132	845	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40462635	40462635	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762056710		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	134	627	2	ENST00000345506.4:c.2333G>A	p.Arg778His	p.R778H	ENST00000345506	NM_003152.3	778	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	255	811	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	170	683	2	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439936	56439936	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377765604		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	178	757	0	ENST00000407977.2:c.656G>A	p.Arg219His	p.R219H	ENST00000407977		219	cGc/cAc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs758630849		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	93	593	0	ENST00000305921.3:c.1349del	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533905	63533905	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	173	501	1	ENST00000307078.5:c.1249del	p.Ala417ArgfsTer41	p.A417Rfs*41	ENST00000307078	NM_004655.3	417	Gcg/cg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs771001164		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	61	435	1	ENST00000307078.5:c.1214_1215del	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626843	14626843	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377564300		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	130	782	0	ENST00000254322.2:c.932G>A	p.Arg311His	p.R311H	ENST00000254322	NM_006145.1	311	cGt/cAt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15295797	15295797	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1166093165		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	190	930	0	ENST00000263388.2:c.2330C>T	p.Pro777Leu	p.P777L	ENST00000263388	NM_000435.2	777	cCg/cTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302604	15302604	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115836330		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	143	899	1	ENST00000263388.2:c.754G>A	p.Val252Met	p.V252M	ENST00000263388	NM_000435.2	252	Gtg/Atg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350333	15350333	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	26	595	0	ENST00000263377.2:c.3446G>T	p.Arg1149Leu	p.R1149L	ENST00000263377	NM_058243.2	1149	cGg/cTg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17384941	17384941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	177	884	0	ENST00000359435.4:c.491G>A	p.Arg164His	p.R164H	ENST00000359435	NM_001033549.1	164	cGc/cAc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17951140	17951140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	116	662	0	ENST00000458235.1:c.1153G>A	p.Ala385Thr	p.A385T	ENST00000458235	NM_000215.3	385	Gcc/Acc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18968288	18968288	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776533487		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	129	897	0	ENST00000262803.5:c.2128G>A	p.Ala710Thr	p.A710T	ENST00000262803	NM_002911.3	710	Gcc/Acc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30314561	30314561	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	121	578	0	ENST00000262643.3:c.1111-1G>A		p.X371_splice	ENST00000262643	NM_001238.2	371																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36228998	36228998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	157	800	1	ENST00000222270.7:c.7778G>A	p.Arg2593His	p.R2593H	ENST00000222270	NM_014727.1	2593	cGc/cAc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383182	42383182	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782657641		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	145	766	4	ENST00000221972.3:c.202C>T	p.Arg68Cys	p.R68C	ENST00000221972	NM_021601.3	68	Cgc/Tgc																																																																															
CENPA	1058	MSKCC	GRCh37	2	27009132	27009132	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319855787		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	30	137	0	ENST00000335756.4:c.72del	p.Gly25AlafsTer9	p.G25Afs*9	ENST00000335756	NM_001809.3	23	aCc/ac																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213243	39213243	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	172	881	6	ENST00000402219.2:c.3724del	p.Ser1242ValfsTer37	p.S1242Vfs*37	ENST00000402219	NM_005633.3	1242	Agt/gt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630498	47630498	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	123	772	0	ENST00000233146.2:c.169del	p.Val57CysfsTer7	p.V57Cfs*7	ENST00000233146	NM_000251.2	56	gaG/ga																																																																															
ACVR1	90	MSKCC	GRCh37	2	158594104	158594104	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs554387941		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	75	382	0	ENST00000263640.3:c.1469G>A	p.Arg490His	p.R490H	ENST00000263640	NM_001105.4	490	cGt/cAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212483981	212483981	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	24	429	0	ENST00000342788.4:c.2222del	p.Gly741GlufsTer4	p.G741Efs*4	ENST00000342788	NM_005235.2	741	gGa/ga																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375133	31375133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	117	862	0	ENST00000328111.2:c.530C>T	p.Thr177Ile	p.T177I	ENST00000328111	NM_006892.3	177	aCa/aTa																																																																															
SRC	6714	MSKCC	GRCh37	20	36031202	36031202	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202242810		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	144	755	0	ENST00000358208.4:c.1321C>T	p.Arg441Cys	p.R441C	ENST00000358208		441	Cgc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980756	40980756	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	98	512	1	ENST00000373198.4:c.1730del	p.Pro577LeufsTer24	p.P577Lfs*24	ENST00000373198	NM_133170.3	577	cCt/ct																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306584	41306584	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	100	747	1	ENST00000373198.4:c.1075C>T	p.Arg359Ter	p.R359*	ENST00000373198	NM_133170.3	359	Cga/Tga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713246	30713246	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56105708		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	42	382	0	ENST00000359013.4:c.646G>A	p.Val216Ile	p.V216I	ENST00000359013	NM_001024847.2	216	Gtt/Att																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125763	47125763	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144171734		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	77	337	0	ENST00000409792.3:c.5507C>T	p.Pro1836Leu	p.P1836L	ENST00000409792	NM_014159.6	1836	cCg/cTg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430546	181430546	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	93	589	0	ENST00000325404.1:c.402del	p.Gly135AlafsTer19	p.G135Afs*19	ENST00000325404	NM_003106.3	133	gCc/gc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1976716	1976717	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	70	687	0	ENST00000382895.3:c.3501_3502del	p.Cys1167Ter	p.C1167*	ENST00000382895	NM_133330.2	1167	TGt/t																																																																															
KDR	3791	MSKCC	GRCh37	4	55971073	55971073	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs754856383		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	63	499	0	ENST00000263923.4:c.1724G>T	p.Arg575Ile	p.R575I	ENST00000263923	NM_002253.2	575	aGa/aTa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244091	153244091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	111	483	0	ENST00000281708.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000281708	NM_033632.3	689	cGg/cAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538244	187538244	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746286358		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	107	575	0	ENST00000441802.2:c.8990C>T	p.Thr2997Met	p.T2997M	ENST00000441802	NM_005245.3	2997	aCg/aTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627747	187627747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143694311		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	89	412	0	ENST00000441802.2:c.3235G>A	p.Val1079Ile	p.V1079I	ENST00000441802	NM_005245.3	1079	Gtt/Att																																																																															
TERT	7015	MSKCC	GRCh37	5	1255456	1255456	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374968697		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	129	712	0	ENST00000310581.5:c.3103G>A	p.Val1035Ile	p.V1035I	ENST00000310581	NM_198253.2	1035	Gtc/Atc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168713	56168713	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1483289809		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	83	386	0	ENST00000399503.3:c.1567G>A	p.Val523Ile	p.V523I	ENST00000399503	NM_005921.1	523	Gta/Ata																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	261	583	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86629102	86629102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	63	288	0	ENST00000274376.6:c.847C>T	p.Arg283Cys	p.R283C	ENST00000274376	NM_002890.2	283	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112178804	112178804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	69	370	1	ENST00000257430.4:c.7513C>T	p.Arg2505Ter	p.R2505*	ENST00000257430	NM_000038.5	2505	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112179789	112179789	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587779810		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	42	298	0	ENST00000257430.4:c.8498G>A	p.Arg2833His	p.R2833H	ENST00000257430	NM_000038.5	2833	cGc/cAc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519731	176519731	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1348650129		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	123	834	1	ENST00000292408.4:c.1003G>A	p.Ala335Thr	p.A335T	ENST00000292408	NM_213647.1	335	Gca/Aca																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638884	176638884	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765811504		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	129	662	0	ENST00000439151.2:c.3484C>T	p.Arg1162Cys	p.R1162C	ENST00000439151	NM_022455.4	1162	Cgt/Tgt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180045918	180045920	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTC	CTC	-	rs746341092		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	48	475	0	ENST00000261937.6:c.2851_2853del	p.Glu951del	p.E951del	ENST00000261937	NM_182925.4	951	GAG/-																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047959	180047959	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs933223149		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	131	880	1	ENST00000261937.6:c.2216G>A	p.Arg739His	p.R739H	ENST00000261937	NM_182925.4	739	cGc/cAc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798105	32798105	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	80	810	0	ENST00000374899.4:c.1574del	p.Gly525AspfsTer36	p.G525Dfs*36	ENST00000374899	NM_018833.2	525	gGa/ga																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	112	816	7	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32806009	32806009	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1397817921		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	106	708	0	ENST00000374899.4:c.2T>C	p.Met1?	p.M1?	ENST00000374899	NM_018833.2	1	aTg/aCg																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36651936	36651936	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748554042		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	135	708	1	ENST00000244741.5:c.58C>T	p.Arg20Cys	p.R20C	ENST00000244741	NM_000389.4	20	Cgc/Tgc																																																																															
FYN	2534	MSKCC	GRCh37	6	111983028	111983028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	144	731	0	ENST00000368678.4:c.1519C>T	p.Arg507Cys	p.R507C	ENST00000368678		507	Cgc/Tgc																																																																															
FYN	2534	MSKCC	GRCh37	6	112041169	112041169	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766059845		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	103	549	0	ENST00000368678.4:c.86G>A	p.Arg29His	p.R29H	ENST00000368678		29	cGc/cAc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150022919	150022919	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	74	333	0	ENST00000253339.5:c.344A>G	p.Asp115Gly	p.D115G	ENST00000253339		115	gAt/gGt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962298	2962298	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769577430		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	191	786	2	ENST00000396946.4:c.2239G>A	p.Val747Ile	p.V747I	ENST00000396946	NM_032415.4	747	Gtc/Atc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6027156	6027157	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs758048239		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	14	13	0	ENST00000265849.7:c.1239dup	p.Asp414ArgfsTer44	p.D414Rfs*44	ENST00000265849	NM_000535.5	413	-/A																																																																															
RAC1	5879	MSKCC	GRCh37	7	6431665	6431665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	142	774	0	ENST00000356142.4:c.218C>T	p.Pro73Leu	p.P73L	ENST00000356142	NM_018890.3	73	cCg/cTg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468251	50468251	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs548117828		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	108	686	0	ENST00000331340.3:c.1486G>A	p.Gly496Ser	p.G496S	ENST00000331340	NM_006060.4	496	Ggc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221719	55221719	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs776490661		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	81	480	1	ENST00000275493.2:c.763C>T	p.Arg255Ter	p.R255*	ENST00000275493	NM_005228.3	255	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55272981	55272981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	113	600	0	ENST00000275493.2:c.3304G>A	p.Ala1102Thr	p.A1102T	ENST00000275493	NM_005228.3	1102	Gct/Act																																																																															
MET	4233	MSKCC	GRCh37	7	116409799	116409799	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199502137		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	51	293	0	ENST00000397752.3:c.2684C>T	p.Thr895Met	p.T895M	ENST00000397752	NM_000245.2	895	aCg/aTg																																																																															
RHEB	6009	MSKCC	GRCh37	7	151181886	151181886	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	72	286	0	ENST00000262187.5:c.129del	p.Phe43LeufsTer4	p.F43Lfs*4	ENST00000262187	NM_005614.3	43	ttT/tt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38283643	38283643	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs186746130		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	74	458	0	ENST00000425967.3:c.835G>A	p.Val279Met	p.V279M	ENST00000425967	NM_001174067.1	279	Gtg/Atg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521481	8521481	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760428875		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	153	577	0	ENST00000356435.5:c.757G>A	p.Val253Ile	p.V253I	ENST00000356435		253	Gtt/Att																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570404	87570404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	130	776	0	ENST00000277120.3:c.2144G>A	p.Arg715Gln	p.R715Q	ENST00000277120		715	cGg/cAg																																																																															
SYK	6850	MSKCC	GRCh37	9	93624511	93624511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	25	410	0	ENST00000375746.1:c.602G>A	p.Gly201Asp	p.G201D	ENST00000375746	NM_001174167.1	201	gGc/gAc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1314918	1314920	+	downstream_gene_variant	3'Flank	DEL	AGG	AGG	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	74	508	0				ENST00000381566																																																																																		
KDM6A	7403	MSKCC	GRCh37	X	44918695	44918695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746746824		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	80	397	1	ENST00000377967.4:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000377967	NM_021140.2	393	cGa/cAa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44921908	44921908	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778421870		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	95	398	0	ENST00000377967.4:c.1442G>A	p.Arg481His	p.R481H	ENST00000377967	NM_021140.2	481	cGc/cAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	117	742	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																															
MED12	9968	MSKCC	GRCh37	X	70351422	70351422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	127	656	0	ENST00000374080.3:c.4070G>A	p.Arg1357His	p.R1357H	ENST00000374080		1357	cGc/cAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76937602	76937603	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	42	363	0	ENST00000373344.5:c.3145dup	p.Ile1049AsnfsTer4	p.I1049Nfs*4	ENST00000373344	NM_000489.3	1049	ata/aAta																																																																															
STAG2	10735	MSKCC	GRCh37	X	123191783	123191783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	72	432	0	ENST00000218089.9:c.1372G>A	p.Ala458Thr	p.A458T	ENST00000218089	NM_001042749.1	458	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	154	415	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0044742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	235	457	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	84	565	0	ENST00000324856.7:c.3977dup	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	DEL	A	A	-			P-0044742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	121	578	0	ENST00000269305.4:c.993+2del		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48604650	48604651	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0044742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	60	307	0	ENST00000342988.3:c.1474_1475del	p.Val492Ter	p.V492*	ENST00000342988	NM_005359.5	491	gGT/g																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0044747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	49	256	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0044747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	76	560	1	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																															
MSH3	4437	MSKCC	GRCh37	5	80171602	80171602	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs576204286		P-0044747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	27	316	0	ENST00000265081.6:c.3335C>T	p.Thr1112Met	p.T1112M	ENST00000265081	NM_002439.4	1112	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0044782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	102	311	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259034	89259034	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	37	238	1	ENST00000336596.2:c.178G>T	p.Glu60Ter	p.E60*	ENST00000336596	NM_005233.5	60	Gaa/Taa																																																																															
RET	5979	MSKCC	GRCh37	10	43600595	43600595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	139	640	0	ENST00000355710.3:c.821C>T	p.Ala274Val	p.A274V	ENST00000355710	NM_020975.4	274	gCg/gTg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94204866	94204866	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	45	378	0	ENST00000323929.3:c.719T>A	p.Leu240His	p.L240H	ENST00000323929	NM_005591.3	240	cTt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420798	49420798	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	85	553	0	ENST00000301067.7:c.14951G>C	p.Gly4984Ala	p.G4984A	ENST00000301067	NM_003482.3	4984	gGa/gCa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066946	30066946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	68	348	0	ENST00000331968.5:c.2185G>T	p.Gly729Cys	p.G729C	ENST00000331968	NM_002742.2	729	Ggt/Tgt																																																																															
ALK	238	MSKCC	GRCh37	2	29416701	29416701	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	79	462	0	ENST00000389048.3:c.4252C>G	p.Pro1418Ala	p.P1418A	ENST00000389048	NM_004304.4	1418	Cct/Gct																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023993	31023993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	122	611	0	ENST00000375687.4:c.3478G>A	p.Gly1160Ser	p.G1160S	ENST00000375687	NM_015338.5	1160	Ggc/Agc																																																																															
MYC	4609	MSKCC	GRCh37	8	128751083	128751083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	116	611	0	ENST00000377970.2:c.620C>T	p.Ser207Leu	p.S207L	ENST00000377970	NM_002467.4	207	tCg/tTg																																																																															
FANCC	2176	MSKCC	GRCh37	9	97888833	97888833	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1306075116		P-0044782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	47	418	0	ENST00000289081.3:c.874C>T	p.Arg292Trp	p.R292W	ENST00000289081	NM_000136.2	292	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0044801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	303	677	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	26	362	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TEK	7010	MSKCC	GRCh37	9	27192565	27192565	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	55	496	0	ENST00000380036.4:c.1568G>C	p.Gly523Ala	p.G523A	ENST00000380036	NM_000459.3	523	gGa/gCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0044804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	134	278	1	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577068	7577069	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0044804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	386	731	1	ENST00000269305.4:c.869_870del	p.Arg290GlnfsTer15	p.R290Qfs*15	ENST00000269305	NM_001126112.2	290	cGC/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0044884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	239	618	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061098	38061202	+	inframe_deletion	In_Frame_Del	DEL	GGGGTCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTG	GGGGTCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTG	-			P-0044884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	94	154	0	ENST00000250448.2:c.787_891del	p.Gln263_Pro297del	p.Q263_P297del	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGCGGCCCTGAGAGCCGCAAGGACCCC/-																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198263211	198263211	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	153	404	0	ENST00000335508.6:c.3108T>G	p.Ile1036Met	p.I1036M	ENST00000335508	NM_012433.2	1036	atT/atG																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24133970	24133970	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	54	301	0	ENST00000263121.7:c.121G>T	p.Gly41Cys	p.G41C	ENST00000263121	NM_003073.3	41	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0044961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	669	552	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0044961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	301	332	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928846	49928846	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371791811		P-0044961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	724	743	0	ENST00000296474.3:c.3520C>T	p.Arg1174Cys	p.R1174C	ENST00000296474	NM_002447.2	1174	Cgc/Tgc																																																																															
ATR	545	MSKCC	GRCh37	3	142176590	142176590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	40	302	0	ENST00000350721.4:c.7511C>A	p.Thr2504Asn	p.T2504N	ENST00000350721	NM_001184.3	2504	aCc/aAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860104	151860120	+	frameshift_variant	Frame_Shift_Del	DEL	GTGAATCAGGAACAAAT	GTGAATCAGGAACAAAT	-			P-0044961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	150	362	0	ENST00000262189.6:c.10542_10558del	p.Phe3515IlefsTer45	p.F3515Ifs*45	ENST00000262189	NM_170606.2	3514	tcATTTGTTCCTGATTCACca/tcca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0044972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	42	377	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0044972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	103	687	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0045000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	190	704	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0045000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	91	424	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	26	212	3	ENST00000257430.4:c.3919dup	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347320	89347320	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	262	937	0	ENST00000301030.4:c.5630C>G	p.Pro1877Arg	p.P1877R	ENST00000301030	NM_001256183.1	1877	cCg/cGg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259146	89259146	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	23	379	0	ENST00000336596.2:c.290T>C	p.Val97Ala	p.V97A	ENST00000336596	NM_005233.5	97	gTg/gCg																																																																															
APC	324	MSKCC	GRCh37	5	112174604	112174606	+	frameshift_variant	Frame_Shift_Del	DEL	CGG	CGG	CT			P-0045000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	35	388	1	ENST00000257430.4:c.3314_3315delinsT	p.Arg1105LeufsTer21	p.R1105Lfs*21	ENST00000257430	NM_000038.5	1105	CGG/CT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0045002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	92	453	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0045274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	80	377	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480028	50480028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs759976916		P-0045274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	91	719	3	ENST00000394963.4:c.262C>T	p.Arg88Ter	p.R88*	ENST00000394963	NM_003076.4	88	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509847	187509847	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	42	375	0	ENST00000441802.2:c.13666G>T	p.Glu4556Ter	p.E4556*	ENST00000441802	NM_005245.3	4556	Gag/Tag																																																																															
PARK2	5071	MSKCC	GRCh37	6	162622229	162622229	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	88	369	0	ENST00000366898.1:c.468A>T	p.Arg156Ser	p.R156S	ENST00000366898	NM_004562.2	156	agA/agT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	228	529	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	124	486	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	199	639	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637555	52637555	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	146	503	0	ENST00000394830.3:c.2761C>T	p.Arg921Ter	p.R921*	ENST00000394830	NM_018313.4	921	Cga/Tga																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	99	502	0	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	245	707	7	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
TERT	7015	MSKCC	GRCh37	5	1278865	1278865	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149566858		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	300	917	0	ENST00000310581.5:c.2177C>T	p.Thr726Met	p.T726M	ENST00000310581	NM_198253.2	726	aCg/aTg																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631629	90631629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367982647		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	133	818	4	ENST00000330062.3:c.640G>A	p.Ala214Thr	p.A214T	ENST00000330062	NM_002168.2	214	Gca/Aca																																																																															
BBC3	27113	MSKCC	GRCh37	19	47725019	47725019	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1039339737		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	146	1032	0	ENST00000449228.1:c.725del	p.Gly242AlafsTer48	p.G242Afs*48	ENST00000449228	NM_001127240.2	242	gGc/gc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40468879	40468879	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	219	519	1	ENST00000264657.5:c.2185del	p.Arg729AlafsTer3	p.R729Afs*3	ENST00000264657	NM_139276.2	729	Cgc/gc																																																																															
SMO	6608	MSKCC	GRCh37	7	128845518	128845518	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748004767		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	281	929	2	ENST00000249373.3:c.815C>T	p.Ala272Val	p.A272V	ENST00000249373	NM_005631.4	272	gCg/gTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276289	15276289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755817475		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	160	892	2	ENST00000263388.2:c.5705G>A	p.Arg1902His	p.R1902H	ENST00000263388	NM_000435.2	1902	cGc/cAc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850777	63850777	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374377066		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	194	693	1	ENST00000279873.7:c.1555G>A	p.Glu519Lys	p.E519K	ENST00000279873	NM_032199.2	519	Gaa/Aaa																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52724280	52724280	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	139	784	0	ENST00000322088.6:c.1415del	p.Lys472SerfsTer28	p.K472Sfs*28	ENST00000322088	NM_014225.5	471	gAa/ga																																																																															
SPOP	8405	MSKCC	GRCh37	17	47677762	47677762	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1380705599		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	100	647	0	ENST00000347630.2:c.1103G>A	p.Arg368His	p.R368H	ENST00000347630	NM_001007230.1	368	cGc/cAc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156834537	156834537	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374170641		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	142	1058	0	ENST00000524377.1:c.305G>A	p.Gly102Asp	p.G102D	ENST00000524377	NM_002529.3	102	gGt/gAt																																																																															
RET	5979	MSKCC	GRCh37	10	43597883	43597883	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	147	1011	1	ENST00000355710.3:c.431G>T	p.Arg144Leu	p.R144L	ENST00000355710	NM_020975.4	144	cGc/cTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431114	49431114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1397945395		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	278	844	1	ENST00000301067.7:c.10025G>A	p.Arg3342His	p.R3342H	ENST00000301067	NM_003482.3	3342	cGc/cAc																																																																															
CDK4	1019	MSKCC	GRCh37	12	58144997	58144997	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060501931		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	240	717	0	ENST00000257904.6:c.347C>T	p.Thr116Met	p.T116M	ENST00000257904	NM_000075.3	116	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822611	72822611	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	234	738	0	ENST00000268489.5:c.9564G>T	p.Met3188Ile	p.M3188I	ENST00000268489	NM_006885.3	3188	atG/atT																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110078	8110078	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751644642		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	242	633	0	ENST00000585124.1:c.527G>A	p.Arg176Gln	p.R176Q	ENST00000585124	NM_004217.3	176	cGa/cAa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59857743	59857743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	116	455	3	ENST00000259008.2:c.1814G>A	p.Gly605Asp	p.G605D	ENST00000259008	NM_032043.2	605	gGc/gAc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18968142	18968142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	130	796	0	ENST00000262803.5:c.1982G>A	p.Gly661Asp	p.G661D	ENST00000262803	NM_002911.3	661	gGc/gAc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918076	50918076	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	144	881	1	ENST00000440232.2:c.2393A>C	p.Tyr798Ser	p.Y798S	ENST00000440232	NM_002691.3	798	tAc/tCc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027670	48027670	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	64	410	0	ENST00000234420.5:c.2548T>C	p.Tyr850His	p.Y850H	ENST00000234420	NM_000179.2	850	Tac/Cac																																																																															
REL	5966	MSKCC	GRCh37	2	61149222	61149223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	165	436	0	ENST00000295025.8:c.1414dup	p.Met472AsnfsTer16	p.M472Nfs*16	ENST00000295025	NM_002908.2	471	gga/ggAa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070355	37070355	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	166	562	0	ENST00000231790.2:c.1491del	p.Arg498GlufsTer10	p.R498Efs*10	ENST00000231790	NM_000249.3	497	cGg/cg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47142993	47142993	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	102	685	0	ENST00000409792.3:c.4970C>A	p.Pro1657His	p.P1657H	ENST00000409792	NM_014159.6	1657	cCt/cAt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436674	52436676	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	367	838	0	ENST00000460680.1:c.1998_2000del	p.Arg667del	p.R667del	ENST00000460680	NM_004656.3	666	agAAGg/agg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643470	52643470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	87	662	0	ENST00000394830.3:c.2426C>T	p.Ala809Val	p.A809V	ENST00000394830	NM_018313.4	809	gCt/gTt																																																																															
TP63	8626	MSKCC	GRCh37	3	189607155	189607155	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1261217150		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	157	967	0	ENST00000264731.3:c.1534A>G	p.Met512Val	p.M512V	ENST00000264731	NM_003722.4	512	Atg/Gtg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950120	38950120	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	213	670	0	ENST00000357387.3:c.3830T>C	p.Leu1277Pro	p.L1277P	ENST00000357387	NM_152756.3	1277	cTg/cCg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176722246	176722246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	98	603	1	ENST00000439151.2:c.7877C>T	p.Ala2626Val	p.A2626V	ENST00000439151	NM_022455.4	2626	gCc/gTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140508746	140508746	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	104	679	0	ENST00000288602.6:c.554T>C	p.Leu185Pro	p.L185P	ENST00000288602	NM_004333.4	185	cTg/cCg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	163	480	1	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	163	267	0	ENST00000257430.4:c.4037C>G	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tGa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367797	15367797	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1195390127		P-0046846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	373	686	2	ENST00000263377.2:c.1529G>A	p.Arg510Gln	p.R510Q	ENST00000263377	NM_058243.2	510	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0046846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	182	325	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0046846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	275	728	0	ENST00000269305.4:c.376T>C	p.Tyr126His	p.Y126H	ENST00000269305	NM_001126112.2	126	Tac/Cac																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442566	52442566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	208	432	0	ENST00000460680.1:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000460680	NM_004656.3	60	cGa/cAa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793433	18793433	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202143029		P-0046846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	140	399	1	ENST00000266497.5:c.4130G>A	p.Arg1377His	p.R1377H	ENST00000266497		1377	cGt/cAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925326	114925326	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	196	466	0	ENST00000543371.1:c.1404G>C	p.Lys468Asn	p.K468N	ENST00000543371	NM_001198531.1	468	aaG/aaC																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805561	46805561	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1286034091		P-0046846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	403	829	3	ENST00000290295.7:c.395G>A	p.Gly132Glu	p.G132E	ENST00000290295	NM_006361.5	132	gGa/gAa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26101071	26101071	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	204	592	0	ENST00000435504.4:c.21del	p.Lys8ArgfsTer14	p.K8Rfs*14	ENST00000435504		7	agG/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0048761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	15	567	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592075	67592075	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs761888083		P-0048761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	12	221	1	ENST00000274335.5:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000274335		631	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923692	72923692	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	15	660	3	ENST00000268489.5:c.3386del	p.Pro1129GlnfsTer58	p.P1129Qfs*58	ENST00000268489	NM_006885.3	1129	cCa/ca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912429	32912430	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	G			P-0048761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	10	240	0	ENST00000380152.3:c.3937_3938delinsG	p.Tyr1313AlafsTer22	p.Y1313Afs*22	ENST00000380152		1313	TAc/Gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0049188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	494	1135	2	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061389	38061389	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	368	808	0	ENST00000250448.2:c.600C>G	p.Ile200Met	p.I200M	ENST00000250448	NM_004496.3	200	atC/atG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	66	364	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0054285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1196	149	1030	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0054285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	113	526	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0061030-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			787	26	594	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578220	7578220	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0061303-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			264	404	782	0	ENST00000269305.4:c.629del	p.Asn210ThrfsTer37	p.N210Tfs*37	ENST00000269305	NM_001126112.2	210	aAc/ac																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245118	46245118	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0061303-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			867	72	688	0	ENST00000334344.6:c.3212C>G	p.Ser1071Ter	p.S1071*	ENST00000334344	NM_152641.2	1071	tCa/tGa																																																																															
RAD51	5888	MSKCC	GRCh37	15	40998378	40998378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061303-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			246	212	415	0	ENST00000267868.3:c.229G>A	p.Glu77Lys	p.E77K	ENST00000267868	NM_002875.4	77	Gag/Aag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266221	41266221	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061303-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			523	460	592	0	ENST00000349496.5:c.218C>G	p.Ser73Cys	p.S73C	ENST00000349496	NM_001904.3	73	tCc/tGc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540805	187540805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061303-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			495	332	650	0	ENST00000441802.2:c.6935C>T	p.Ser2312Leu	p.S2312L	ENST00000441802	NM_005245.3	2312	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0061662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	69	956	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157469985	157469985	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	75	832	0	ENST00000346085.5:c.2779G>T	p.Gly927Ter	p.G927*	ENST00000346085	NM_020732.3	927	Gga/Tga																																																																															
RB1	5925	MSKCC	GRCh37	13	49039230	49039230	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	46	436	0	ENST00000267163.4:c.2308C>T	p.Gln770Ter	p.Q770*	ENST00000267163	NM_000321.2	770	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056247	27056247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	37	838	0	ENST00000324856.7:c.1243C>T	p.His415Tyr	p.H415Y	ENST00000324856	NM_006015.4	415	Cat/Tat																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64135637	64135638	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0061662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	73	754	0	ENST00000334205.4:c.1105_1106delinsTT	p.Asp369Phe	p.D369F	ENST00000334205	NM_003942.2	369	GAc/TTc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29005395	29005395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	35	509	0	ENST00000282397.4:c.866C>G	p.Ala289Gly	p.A289G	ENST00000282397	NM_002019.4	289	gCc/gGc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868048	56868048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	37	713	0	ENST00000308159.5:c.1546G>A	p.Glu516Lys	p.E516K	ENST00000308159	NM_014669.4	516	Gag/Aag																																																																															
NF1	4763	MSKCC	GRCh37	17	29563023	29563023	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	50	499	2	ENST00000358273.4:c.3958G>C	p.Glu1320Gln	p.E1320Q	ENST00000358273	NM_001042492.2	1320	Gaa/Caa																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045954	26045954	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			716	61	991	0	ENST00000540144.1:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000540144	NM_003531.2	106	Gaa/Caa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044877	47044877	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	90	355	0	ENST00000329236.7:c.1969G>T	p.Glu657Ter	p.E657*	ENST00000329236	NM_001204466.1	657	Gag/Tag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11317012	11317012	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs151205593		P-0061667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	27	595	0	ENST00000361445.4:c.482A>G	p.Asn161Ser	p.N161S	ENST00000361445	NM_004958.3	161	aAt/aGt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399245	139399245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	26	580	0	ENST00000277541.6:c.4898G>A	p.Arg1633His	p.R1633H	ENST00000277541	NM_017617.3	1633	cGt/cAt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641301	23641301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	47	606	0	ENST00000261584.4:c.2174C>T	p.Ser725Leu	p.S725L	ENST00000261584	NM_024675.3	725	tCa/tTa																																																																															
AXL	558	MSKCC	GRCh37	19	41749594	41749594	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1366012932		P-0061667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	80	517	0	ENST00000301178.4:c.1519C>T	p.Arg507Trp	p.R507W	ENST00000301178	NM_021913.4	507	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0061667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	64	402	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
ATM	472	MSKCC	GRCh37	11	108155192	108155192	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	39	360	0	ENST00000278616.4:c.3985G>T	p.Gly1329Ter	p.G1329*	ENST00000278616	NM_000051.3	1329	Gga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120733	115120733	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	37	639	0	ENST00000257566.3:c.273G>T	p.Lys91Asn	p.K91N	ENST00000257566	NM_016569.3	91	aaG/aaT																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610165	81610165	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	76	611	1	ENST00000298171.2:c.1763C>A	p.Thr588Lys	p.T588K	ENST00000298171	NM_000369.2	588	aCg/aAg																																																																															
MGA	23269	MSKCC	GRCh37	15	42041874	42041874	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0061667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	88	555	0	ENST00000219905.7:c.6070del	p.Ser2024ProfsTer78	p.S2024Pfs*78	ENST00000219905	NM_001164273.1	2023	gaT/ga																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14024679	14024680	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0061667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	52	376	0	ENST00000311895.7:c.905_906insAT	p.Asp302GlufsTer13	p.D302Efs*13	ENST00000311895	NM_005236.2	302	gat/gaATt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37050383	37050383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	51	334	0	ENST00000231790.2:c.532G>A	p.Glu178Lys	p.E178K	ENST00000231790	NM_000249.3	178	Gaa/Aaa																																																																															
ATR	545	MSKCC	GRCh37	3	142180838	142180838	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	22	346	0	ENST00000350721.4:c.7136G>T	p.Trp2379Leu	p.W2379L	ENST00000350721	NM_001184.3	2379	tGg/tTg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681111	117681111	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	22	478	0	ENST00000368508.3:c.3509A>G	p.Asp1170Gly	p.D1170G	ENST00000368508	NM_002944.2	1170	gAt/gGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528596	8528596	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061667-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	34	451	0	ENST00000356435.5:c.536G>C	p.Arg179Pro	p.R179P	ENST00000356435		179	cGa/cCa																																																																															
MYC	4609	MSKCC	GRCh37	8	128748844	128748845	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1361181475		P-0061669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	35	375	0	ENST00000377970.2:c.12dup	p.Arg5SerfsTer17	p.R5Sfs*17	ENST00000377970	NM_002467.4	2	gat/gaTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs397516439		P-0061669-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	124	593	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0061671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	141	256	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0061671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	145	606	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0061671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	124	566	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368208	45368208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	222	378	1	ENST00000262160.6:c.1394G>A	p.Ser465Asn	p.S465N	ENST00000262160	NM_005901.5	465	aGc/aAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0061671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	178	586	1	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934222	39934222	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1358504792		P-0061671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	164	551	1	ENST00000378444.4:c.377C>T	p.Pro126Leu	p.P126L	ENST00000378444	NM_001123385.1	126	cCg/cTg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473616	67473616	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs778356642		P-0061671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	302	454	3	ENST00000327367.4:c.696G>A	p.Trp232Ter	p.W232*	ENST00000327367	NM_005902.3	232	tgG/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0061671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	181	272	6	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78426108	78426108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	149	535	2	ENST00000370768.2:c.1417G>A	p.Gly473Arg	p.G473R	ENST00000370768	NM_003902.3	473	Ggg/Agg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554445	63554445	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	211	606	1	ENST00000307078.5:c.294C>A	p.Phe98Leu	p.F98L	ENST00000307078	NM_004655.3	98	ttC/ttA																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120283	70120284	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCCC			P-0061671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	183	568	0	ENST00000245479.2:c.1286_1290dup	p.Ser431AlafsTer41	p.S431Afs*41	ENST00000245479	NM_000346.3	429	agc/aGCCCCgc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120284	70120285	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0061671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	185	571	0	ENST00000245479.2:c.1290dup	p.Ser431LeufsTer147	p.S431Lfs*147	ENST00000245479	NM_000346.3	429	agc/agCc																																																																															
EP300	2033	MSKCC	GRCh37	22	41548328	41548328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	94	471	0	ENST00000263253.7:c.3116C>T	p.Pro1039Leu	p.P1039L	ENST00000263253	NM_001429.3	1039	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112170743	112170744	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0061671-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	160	461	1	ENST00000257430.4:c.1840dup	p.Ala614GlyfsTer20	p.A614Gfs*20	ENST00000257430	NM_000038.5	613	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0061672-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	18	471	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0061672-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	15	332	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874347	151874347	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	81	663	0	ENST00000262189.6:c.8191G>T	p.Glu2731Ter	p.E2731*	ENST00000262189	NM_170606.2	2731	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0061676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	76	622	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14014071	14014071	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs368281878		P-0061676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	29	519	0	ENST00000311895.7:c.49G>T	p.Glu17Ter	p.E17*	ENST00000311895	NM_005236.2	17	Gag/Tag																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913351		P-0061676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	17	439	0	ENST00000288602.6:c.1397G>C	p.Gly466Ala	p.G466A	ENST00000288602	NM_004333.4	466	gGa/gCa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678349	88678349	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	48	603	0	ENST00000360948.2:c.1187T>A	p.Leu396His	p.L396H	ENST00000360948	NM_001012338.2	396	cTc/cAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	338142	338142	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	33	642	0	ENST00000262320.3:c.2569A>G	p.Lys857Glu	p.K857E	ENST00000262320	NM_003502.3	857	Aaa/Gaa																																																																															
ALK	238	MSKCC	GRCh37	2	29754863	29754863	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	67	714	0	ENST00000389048.3:c.1072T>A	p.Ser358Thr	p.S358T	ENST00000389048	NM_004304.4	358	Tct/Act																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31380506	31380506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	43	687	0	ENST00000328111.2:c.996G>T	p.Met332Ile	p.M332I	ENST00000328111	NM_006892.3	332	atG/atT																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564423	139564423	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	48	629	0	ENST00000308874.7:c.371G>T	p.Arg124Leu	p.R124L	ENST00000308874		124	cGc/cTc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39916414	39916415	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0061676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	32	451	0	ENST00000378444.4:c.4588_4589delinsTT	p.Gly1530Leu	p.G1530L	ENST00000378444	NM_001123385.1	1530	GGa/TTa																																																																															
AR	367	MSKCC	GRCh37	X	66765982	66765982	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	49	695	0	ENST00000374690.3:c.994G>T	p.Ala332Ser	p.A332S	ENST00000374690	NM_000044.3	332	Gca/Tca																																																																															
ATRX	546	MSKCC	GRCh37	X	76953099	76953099	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0061676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	11	339	0	ENST00000373344.5:c.214A>T	p.Lys72Ter	p.K72*	ENST00000373344	NM_000489.3	72	Aag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0061681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	194	681	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
ATRX	546	MSKCC	GRCh37	X	76940012	76940012	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs122445105		P-0061681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	200	268	0	ENST00000373344.5:c.736C>T	p.Arg246Cys	p.R246C	ENST00000373344	NM_000489.3	246	Cgc/Tgc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519969		P-0061681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	182	618	0	ENST00000347630.2:c.392G>C	p.Trp131Ser	p.W131S	ENST00000347630	NM_001007230.1	131	tGg/tCg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639056	3639056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	133	695	0	ENST00000294008.3:c.4583C>T	p.Ala1528Val	p.A1528V	ENST00000294008	NM_032444.2	1528	gCc/gTc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500606	99500606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs909142461		P-0061681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	53	661	0	ENST00000268035.6:c.4039G>A	p.Ala1347Thr	p.A1347T	ENST00000268035	NM_000875.3	1347	Gcc/Acc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436557	110436557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	188	787	0	ENST00000375856.3:c.1844C>T	p.Ser615Phe	p.S615F	ENST00000375856	NM_003749.2	615	tCc/tTc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061155	38061167	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCCCGCCGCCG	GCCCCCGCCGCCG	-			P-0061681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	171	755	0	ENST00000250448.2:c.822_834del	p.Gly276AlafsTer41	p.G276Afs*41	ENST00000250448	NM_004496.3	274	gcCGGCGGCGGGGGC/gc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40469222	40469222	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	128	486	0	ENST00000264657.5:c.2122A>G	p.Thr708Ala	p.T708A	ENST00000264657	NM_139276.2	708	Acc/Gcc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688699	47688699	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	176	525	0	ENST00000347630.2:c.601G>C	p.Asp201His	p.D201H	ENST00000347630	NM_001007230.1	201	Gac/Cac																																																																															
MTOR	2475	MSKCC	GRCh37	1	11184667	11184670	+	frameshift_variant	Frame_Shift_Del	DEL	AAAC	AAAC	-			P-0061685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	29	533	0	ENST00000361445.4:c.6547_6550del	p.Val2183SerfsTer3	p.V2183Sfs*3	ENST00000361445	NM_004958.3	2183	GTTTtc/tc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254967	16254968	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0061685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	98	663	0	ENST00000375759.3:c.2236_2237del	p.Arg746ValfsTer4	p.R746Vfs*4	ENST00000375759	NM_015001.2	744	gcAGag/gcag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717757	89717758	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0061685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	34	324	0	ENST00000371953.3:c.783_784del	p.Asn262GlnfsTer35	p.N262Qfs*35	ENST00000371953	NM_000314.4	261	cAG/c																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112577	115112591	+	frameshift_variant	Frame_Shift_Del	DEL	TCGGGGCCATGCTCC	TCGGGGCCATGCTCC	AAGA			P-0061685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	62	751	1	ENST00000257566.3:c.1149_1163delinsTCTT	p.Glu383AspfsTer20	p.E383Dfs*20	ENST00000257566	NM_016569.3	383	gaGGAGCATGGCCCCGAg/gaTCTTg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061111	38061112	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0061685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	42	764	0	ENST00000250448.2:c.877_878del	p.Ser293ProfsTer9	p.S293Pfs*9	ENST00000250448	NM_004496.3	293	AGc/c																																																																															
MGA	23269	MSKCC	GRCh37	15	42041106	42041110	+	frameshift_variant	Frame_Shift_Del	DEL	TGTCA	TGTCA	-			P-0061685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	80	720	0	ENST00000219905.7:c.5487_5491del	p.Met1830SerfsTer19	p.M1830Sfs*19	ENST00000219905	NM_001164273.1	1828	ccTGTCAtg/cctg																																																																															
MGA	23269	MSKCC	GRCh37	15	42046641	42046642	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0061685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	57	395	0	ENST00000219905.7:c.7018_7019del	p.Val2340ArgfsTer4	p.V2340Rfs*4	ENST00000219905	NM_001164273.1	2339	TGt/t																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892261	9892261	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0061685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	36	704	0	ENST00000330684.3:c.2229A>T	p.Glu743Asp	p.E743D	ENST00000330684	NM_001134407.1	743	gaA/gaT																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029594	14029595	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0061685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	55	511	0	ENST00000311895.7:c.1807_1808del	p.Leu603GlufsTer12	p.L603Efs*12	ENST00000311895	NM_005236.2	602	cCT/c																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832603	72832604	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0061685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	57	487	0	ENST00000268489.5:c.3977_3978del	p.Glu1326GlyfsTer24	p.E1326Gfs*24	ENST00000268489	NM_006885.3	1326	gAG/g																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15950272	15950273	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0061685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	84	519	0	ENST00000268712.3:c.6671_6672del	p.Ser2224Ter	p.S2224*	ENST00000268712	NM_006311.3	2224	tCT/t																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	63	643	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132485	11132486	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0061685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	72	854	0	ENST00000344626.4:c.2702_2703del	p.Tyr901CysfsTer43	p.Y901Cfs*43	ENST00000344626	NM_003072.3	901	TAt/t																																																																															
ALK	238	MSKCC	GRCh37	2	29449884	29449885	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-			P-0061685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	69	882	0	ENST00000389048.3:c.2970_2971del	p.Cys990Ter	p.C990*	ENST00000389048	NM_004304.4	990	tgTGag/tgag																																																																															
MSH2	4436	MSKCC	GRCh37	2	47639588	47639588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	54	324	0	ENST00000233146.2:c.687del	p.Ala230LeufsTer16	p.A230Lfs*16	ENST00000233146	NM_000251.2	227	agA/ag																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067423	37067424	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0061685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	83	701	0	ENST00000231790.2:c.1336_1337del	p.Ser446LeufsTer32	p.S446Lfs*32	ENST00000231790	NM_000249.3	445	cAG/c																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952145	178952149	+	frameshift_variant	Frame_Shift_Del	DEL	TGAAC	TGAAC	-			P-0061685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	56	434	0	ENST00000263967.3:c.3204_*1del		p.LN1067fs	ENST00000263967	NM_006218.2	1067	tTGAAC/t																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803560	1803561	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0061685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	51	840	0	ENST00000260795.2:c.740_741del		p.X247_splice	ENST00000260795		247																																																																																
AGO2	27161	MSKCC	GRCh37	8	141559376	141559377	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0061685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	62	612	0	ENST00000220592.5:c.1424_1425del	p.Arg475LysfsTer198	p.R475Kfs*198	ENST00000220592	NM_012154.3	475	aGA/a																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739013	145739014	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0061685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	88	805	0	ENST00000428558.2:c.2141_2142del	p.Glu714AlafsTer94	p.E714Afs*94	ENST00000428558	NM_004260.3	714	gAG/g																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518610	204518610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	111	585	0	ENST00000367182.3:c.1273G>A	p.Glu425Lys	p.E425K	ENST00000367182	NM_001278516.1	425	Gaa/Aaa																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145292	58145292	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			753	100	745	0	ENST00000257904.6:c.209A>G	p.Asn70Ser	p.N70S	ENST00000257904	NM_000075.3	70	aAt/aGt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519816		P-0061687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	76	546	1	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112412	115112412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	29	756	0	ENST00000257566.3:c.1328C>T	p.Ser443Leu	p.S443L	ENST00000257566	NM_016569.3	443	tCg/tTg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870929	12870929	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	98	616	0	ENST00000228872.4:c.157del	p.Glu53LysfsTer18	p.E53Kfs*18	ENST00000228872	NM_004064.3	52	atG/at																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118720	115118721	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0061687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	99	593	0	ENST00000257566.3:c.620_621del	p.Leu207GlnfsTer19	p.L207Qfs*19	ENST00000257566	NM_016569.3	207	cTG/c																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221084	5221084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371881792		P-0061687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	69	679	1	ENST00000357368.4:c.3382G>A	p.Val1128Ile	p.V1128I	ENST00000357368	NM_002850.3	1128	Gtc/Atc																																																																															
CDH1	999	MSKCC	GRCh37	16	68849512	68849512	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	92	620	0	ENST00000261769.5:c.1416del	p.Val473SerfsTer8	p.V473Sfs*8	ENST00000261769	NM_004360.3	472	aCc/ac																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143029309	143029309	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	14	266	0	ENST00000262992.4:c.2311C>G	p.Gln771Glu	p.Q771E	ENST00000262992	NM_001101669.1	771	Cag/Gag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949168	151949168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061687-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	50	279	0	ENST00000262189.6:c.1477C>T	p.His493Tyr	p.H493Y	ENST00000262189	NM_170606.2	493	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0061692-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	255	596	1	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0061692-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	526	372	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
BIRC3	330	MSKCC	GRCh37	11	102199658	102199658	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061692-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	66	221	0	ENST00000263464.3:c.1063G>T	p.Glu355Ter	p.E355*	ENST00000263464	NM_001165.4	355	Gaa/Taa																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986800	36986800	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061692-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	122	533	0	ENST00000354822.5:c.889G>T	p.Gly297Cys	p.G297C	ENST00000354822	NM_001079668.2	297	Ggc/Tgc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177896	56177910	+	inframe_deletion	In_Frame_Del	DEL	CAAACAAAAGGCAGA	CAAACAAAAGGCAGA	-			P-0061692-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	246	539	0	ENST00000399503.3:c.2870_2884del	p.Gln957_Arg961del	p.Q957_R961del	ENST00000399503	NM_005921.1	957	CAAACAAAAGGCAGA/-																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737065	145737076	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GATGCCGTGGAA	GATGCCGTGGAA	-			P-0061692-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			749	242	535	0	ENST00000428558.2:c.3490_3501del	p.Phe1164_Ile1167del	p.F1164_I1167del	ENST00000428558	NM_004260.3	1164	TTCCACGGCATC/-																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227041	53227041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061692-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	176	360	0	ENST00000375401.3:c.2534G>T	p.Gly845Val	p.G845V	ENST00000375401	NM_004187.3	845	gGt/gTt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346338	73346338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	17	197	0	ENST00000377767.4:c.1462G>A	p.Asp488Asn	p.D488N	ENST00000377767	NM_014953.3	488	Gat/Aat																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5239008	5239008	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138765579		P-0061695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	28	755	0	ENST00000357368.4:c.1771G>A	p.Ala591Thr	p.A591T	ENST00000357368	NM_002850.3	591	Gcc/Acc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47143008	47143008	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	18	205	0	ENST00000409792.3:c.4955C>T	p.Thr1652Ile	p.T1652I	ENST00000409792	NM_014159.6	1652	aCc/aTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0061695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	15	234	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	364553	364553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	28	674	0	ENST00000262320.3:c.1009G>A	p.Asp337Asn	p.D337N	ENST00000262320	NM_003502.3	337	Gac/Aac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591893	48591893	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061695-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	14	413	0	ENST00000342988.3:c.1056del	p.Tyr353ThrfsTer31	p.Y353Tfs*31	ENST00000342988	NM_005359.5	352	ggA/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0061736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	135	272	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226165	2226165	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	48	659	0	ENST00000326181.6:c.1862A>G	p.Tyr621Cys	p.Y621C	ENST00000326181	NM_032271.2	621	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578424	7578425	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0061736-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	274	653	0	ENST00000269305.4:c.505dup	p.Met169AsnfsTer12	p.M169Nfs*12	ENST00000269305	NM_001126112.2	169	atg/aAtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0061738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	242	435	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0061738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	193	464	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925334	114925334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	336	479	0	ENST00000543371.1:c.1412G>A	p.Arg471His	p.R471H	ENST00000543371	NM_001198531.1	471	cGc/cAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118392694	118392694	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	115	496	0	ENST00000534358.1:c.11726A>G	p.Asn3909Ser	p.N3909S	ENST00000534358	NM_005933.3	3909	aAt/aGt																																																																															
POLE	5426	MSKCC	GRCh37	12	133252014	133252014	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060500853		P-0061738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	112	520	0	ENST00000320574.5:c.1196C>T	p.Ala399Val	p.A399V	ENST00000320574	NM_006231.2	399	gCg/gTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518940	187518940	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	70	372	0	ENST00000441802.2:c.12264G>T	p.Gln4088His	p.Q4088H	ENST00000441802	NM_005245.3	4088	caG/caT																																																																															
APC	324	MSKCC	GRCh37	5	112175345	112175349	+	frameshift_variant	Frame_Shift_Del	DEL	GTTGA	GTTGA	-			P-0061738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	97	437	0	ENST00000257430.4:c.4054_4058del	p.Val1352IlefsTer21	p.V1352Ifs*21	ENST00000257430	NM_000038.5	1352	GTTGAa/a																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149440455	149440455	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771977143		P-0061738-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	118	412	0	ENST00000286301.3:c.1939G>A	p.Val647Ile	p.V647I	ENST00000286301	NM_005211.3	647	Gtc/Atc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519968		P-0061757-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	200	458	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002773-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			550	14	291	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0006687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	302	455	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836642	89836642	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747723074		P-0006687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1047	315	461	0	ENST00000389301.3:c.2248G>A	p.Val750Met	p.V750M	ENST00000389301	NM_000135.2	750	Gtg/Atg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619037	37619037	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3941	1695	385	0	ENST00000447079.4:c.713C>A	p.Ser238Ter	p.S238*	ENST00000447079	NM_015083.1	238	tCg/tAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266016	41266403	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAAT	GCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAAT	-			P-0006687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	250	335	0	ENST00000349496.5:c.18_242-37del		p.X6_splice	ENST00000349496	NM_001904.3	6																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27106592	27106592	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1042	104	565	0	ENST00000324856.7:c.6203C>A	p.Ser2068Ter	p.S2068*	ENST00000324856	NM_006015.4	2068	tCg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	152	538	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519976		P-0009001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	234	586	0	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928075	178928095	+	inframe_deletion	In_Frame_Del	DEL	ATTAGAAGATTTGCTGAACCC	ATTAGAAGATTTGCTGAACCC	-			P-0009001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	117	479	0	ENST00000263967.3:c.1353_1373del	p.Leu452_Pro458del	p.L452_P458del	ENST00000263967	NM_006218.2	451	ggATTAGAAGATTTGCTGAACCCt/ggt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206756	36206757	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0009001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	149	385	0	ENST00000300305.3:c.754_755dup	p.Leu253ProfsTer2	p.L253Pfs*2	ENST00000300305		252	tcc/tcTCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	151	443	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913285		P-0010043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	77	183	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	131	340	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276310	15276310	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369768722		P-0010043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	127	383	0	ENST00000263388.2:c.5684G>A	p.Arg1895His	p.R1895H	ENST00000263388	NM_000435.2	1895	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0010169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1002	55	544	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56167817	56167817	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	52	434	0	ENST00000399503.3:c.1382A>G	p.Asp461Gly	p.D461G	ENST00000399503	NM_005921.1	461	gAc/gGc																																																																															
HGF	3082	MSKCC	GRCh37	7	81339551	81339551	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	60	468	0	ENST00000222390.5:c.1453A>T	p.Ile485Leu	p.I485L	ENST00000222390	NM_000601.4	485	Ata/Tta																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986861	36986877	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCGGGCACCCGGTGC	CTGCGGGCACCCGGTGC	-			P-0010169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	33	67	0	ENST00000354822.5:c.812_828del	p.Gly271AlafsTer162	p.G271Afs*162	ENST00000354822	NM_001079668.2	271	gGCACCGGGTGCCCGCAG/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0014026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	402	656	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0014026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	88	316	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123263394	123263394	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773245022		P-0014026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	332	341	0	ENST00000358487.5:c.1349G>A	p.Arg450His	p.R450H	ENST00000358487	NM_000141.4	450	cGc/cAc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0015509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	17	390	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0020440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	64	907	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0020733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	348	903	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569702	95569702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	168	333	0	ENST00000343455.3:c.4031C>T	p.Ser1344Leu	p.S1344L	ENST00000343455	NM_177438.2	1344	tCa/tTa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519733		P-0020733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	505	1326	2	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	290	447	0	ENST00000257430.4:c.4063del	p.Ser1355LeufsTer60	p.S1355Lfs*60	ENST00000257430	NM_000038.5	1354	Ttt/tt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266649	41266649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	351	777	1	ENST00000349496.5:c.446C>A	p.Ala149Asp	p.A149D	ENST00000349496	NM_001904.3	149	gCc/gAc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680736	30680736	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	132	828	0	ENST00000376406.3:c.983A>T	p.Asp328Val	p.D328V	ENST00000376406	NM_014641.2	328	gAc/gTc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	373	1141	3	ENST00000346208.3:c.1220_1221insA	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcAg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969933	81969933	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752209691		P-0021182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	283	900	0	ENST00000359376.3:c.3002G>A	p.Arg1001His	p.R1001H	ENST00000359376	NM_002661.3	1001	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107135	27107136	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	374	944	0	ENST00000324856.7:c.6747dup	p.Glu2250ArgfsTer28	p.E2250Rfs*28	ENST00000324856	NM_006015.4	2249	tca/tcAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436952	49436952	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748653082		P-0021182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	349	1238	0	ENST00000301067.7:c.5551G>A	p.Val1851Met	p.V1851M	ENST00000301067	NM_003482.3	1851	Gtg/Atg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998987	11998988	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	186	673	0	ENST00000353533.5:c.493dup	p.Tyr165LeufsTer9	p.Y165Lfs*9	ENST00000353533	NM_003010.3	163	-/T																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0021650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	12	464	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692900	89692900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	10	524	0	ENST00000371953.3:c.384G>T	p.Lys128Asn	p.K128N	ENST00000371953	NM_000314.4	128	aaG/aaT																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18544107	18544107	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	26	551	0	ENST00000266497.5:c.1924A>T	p.Asn642Tyr	p.N642Y	ENST00000266497		642	Aat/Tat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445628	49445628	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	59	1077	1	ENST00000301067.7:c.1838A>T	p.Glu613Val	p.E613V	ENST00000301067	NM_003482.3	613	gAg/gTg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431413	121431413	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	8	691	1	ENST00000257555.6:c.617G>T	p.Trp206Leu	p.W206L	ENST00000257555		206	tGg/tTg																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729163	66729163	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs397516792		P-0021714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	11	779	0	ENST00000307102.5:c.371C>A	p.Pro124Gln	p.P124Q	ENST00000307102	NM_002755.3	124	cCg/cAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788618	3788618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	9	553	0	ENST00000262367.5:c.4336C>A	p.Arg1446Ser	p.R1446S	ENST00000262367	NM_004380.2	1446	Cgc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577552	7577552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	11	770	0	ENST00000269305.4:c.729G>T	p.Met243Ile	p.M243I	ENST00000269305	NM_001126112.2	243	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578464	7578464	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	10	841	0	ENST00000269305.4:c.466C>A	p.Arg156Ser	p.R156S	ENST00000269305	NM_001126112.2	156	Cgc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	10	858	2	ENST00000269305.4:c.455C>A	p.Pro152Gln	p.P152Q	ENST00000269305	NM_001126112.2	152	cCg/cAg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519970		P-0021714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	10	614	0	ENST00000347630.2:c.393G>T	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgT																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45377662	45377662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	14	439	1	ENST00000262160.6:c.767C>A	p.Pro256His	p.P256H	ENST00000262160	NM_005901.5	256	cCt/cAt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221318	1221318	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs377208033		P-0021714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	8	664	0	ENST00000326873.7:c.841C>A	p.Pro281Thr	p.P281T	ENST00000326873	NM_000455.4	281	Ccg/Acg																																																																															
CARM1	10498	MSKCC	GRCh37	19	10982484	10982484	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	10	206	0	ENST00000327064.4:c.106C>A	p.Arg36Ser	p.R36S	ENST00000327064	NM_199141.1	36	Cgc/Agc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945969	17945969	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs758959409		P-0021714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	12	877	1	ENST00000458235.1:c.1970G>T	p.Arg657Leu	p.R657L	ENST00000458235	NM_000215.3	657	cGg/cTg																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793280	33793280	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1007915253		P-0021714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	13	363	1	ENST00000498907.2:c.41C>A	p.Pro14Gln	p.P14Q	ENST00000498907	NM_004364.3	14	cCg/cAg																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731496	47731496	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	10	129	0	ENST00000449228.1:c.296C>A	p.Pro99His	p.P99H	ENST00000449228	NM_001127240.2	99	cCc/cAc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082316	16082316	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	11	894	2	ENST00000281043.3:c.130C>A	p.Pro44Thr	p.P44T	ENST00000281043	NM_005378.4	44	Ccc/Acc																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116178	209116178	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	9	551	0	ENST00000345146.2:c.98C>A	p.Pro33His	p.P33H	ENST00000345146	NM_005896.2	33	cCc/cAc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748153	41748153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	13	446	3	ENST00000226382.2:c.616C>A	p.Pro206Thr	p.P206T	ENST00000226382	NM_003924.3	206	Ccc/Acc																																																																															
SDHA	6389	MSKCC	GRCh37	5	236676	236676	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	9	429	0	ENST00000264932.6:c.1394G>T	p.Arg465Leu	p.R465L	ENST00000264932	NM_004168.2	465	cGg/cTg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803074	32803074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	42	734	0	ENST00000374899.4:c.802G>A	p.Ala268Thr	p.A268T	ENST00000374899	NM_018833.2	268	Gcc/Acc																																																																															
LYN	4067	MSKCC	GRCh37	8	56911014	56911014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	50	775	0	ENST00000519728.1:c.1160G>A	p.Gly387Asp	p.G387D	ENST00000519728	NM_002350.3	387	gGc/gAc																																																																															
ABL1	25	MSKCC	GRCh37	9	133738365	133738365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	10	582	1	ENST00000318560.5:c.765G>T	p.Glu255Asp	p.E255D	ENST00000318560	NM_005157.4	255	gaG/gaT																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	31	666	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	47	835	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	37	543	1	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519991		P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	46	727	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	37	665	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038902	12038902	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs724159945		P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	67	595	0	ENST00000396373.4:c.1195C>T	p.Arg399Cys	p.R399C	ENST00000396373	NM_001987.4	399	Cgc/Tgc																																																																															
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	49	679	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	64	531	0	ENST00000342988.3:c.1610A>C	p.Asp537Ala	p.D537A	ENST00000342988	NM_005359.5	537	gAc/gCc																																																																															
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	22	323	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969845	81969845	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369090249		P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	71	738	2	ENST00000359376.3:c.2914G>A	p.Val972Ile	p.V972I	ENST00000359376	NM_002661.3	972	Gtc/Atc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37667846	37667846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	35	688	1	ENST00000447079.4:c.2731G>A	p.Glu911Lys	p.E911K	ENST00000447079	NM_015083.1	911	Gaa/Aaa																																																																															
ATRX	546	MSKCC	GRCh37	X	76814171	76814171	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	28	483	0	ENST00000373344.5:c.6473A>G	p.Lys2158Arg	p.K2158R	ENST00000373344	NM_000489.3	2158	aAg/aGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578394	+	protein_altering_variant	In_Frame_Del	DEL	CGCTCAT	CGCTCAT	A			P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	44	689	0	ENST00000269305.4:c.536_542delinsT	p.His179_Arg181delinsLeu	p.H179_R181delinsL	ENST00000269305	NM_001126112.2	179	cATGAGCGc/cTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0022311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	96	364	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs79184941		P-0022311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	35	350	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690847	89690847	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs587776667		P-0022311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	156	499	0	ENST00000371953.3:c.253+1G>T		p.X85_splice	ENST00000371953	NM_000314.4	85																																																																																
PTEN	5728	MSKCC	GRCh37	10	89624263	89624263	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	48	433	0	ENST00000371953.3:c.37A>G	p.Lys13Glu	p.K13E	ENST00000371953	NM_000314.4	13	Aaa/Gaa																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0024043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	228	621	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27022913	27022938	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCGCCGCCAGCAGCCTGGGCAA	CCCGCCGCCGCCAGCAGCCTGGGCAA	-			P-0024043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	17	68	0	ENST00000324856.7:c.31_56del	p.Ser11AlafsTer91	p.S11Afs*91	ENST00000324856	NM_006015.4	7	CCCGCCGCCGCCAGCAGCCTGGGCAAc/c																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106536	27106536	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	326	1022	0	ENST00000324856.7:c.6147G>A	p.Trp2049Ter	p.W2049*	ENST00000324856	NM_006015.4	2049	tgG/tgA																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577157	64577160	+	frameshift_variant	Frame_Shift_Del	DEL	GACT	GACT	-			P-0024043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	300	887	0	ENST00000337652.1:c.422_425del	p.Gln141ProfsTer12	p.Q141Pfs*12	ENST00000337652	NM_130803.2	141	cAGTCc/cc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610591	10610591	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	310	805	1	ENST00000171111.5:c.119C>A	p.Ala40Glu	p.A40E	ENST00000171111	NM_203500.1	40	gCg/gAg																																																																															
CENPA	1058	MSKCC	GRCh37	2	27015053	27015053	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151098324		P-0024043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	201	567	0	ENST00000335756.4:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000335756	NM_001809.3	52	cGa/cAa																																																																															
EP300	2033	MSKCC	GRCh37	22	41513455	41513458	+	frameshift_variant	Frame_Shift_Del	DEL	GCAT	GCAT	-			P-0024043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	190	685	0	ENST00000263253.7:c.360_363del	p.Ser120ArgfsTer6	p.S120Rfs*6	ENST00000263253	NM_001429.3	120	aGCATg/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	44	614	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0024513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	63	534	1	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711876	89711876	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	34	412	0	ENST00000371953.3:c.494G>A	p.Gly165Glu	p.G165E	ENST00000371953	NM_000314.4	165	gGa/gAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27058039	27058039	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	113	520	1	ENST00000324856.7:c.1747C>T	p.Gln583Ter	p.Q583*	ENST00000324856	NM_006015.4	583	Cag/Tag																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026176	48026176	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881787		P-0024513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	17	368	0	ENST00000234420.5:c.1054G>A	p.Val352Ile	p.V352I	ENST00000234420	NM_000179.2	352	Gtt/Att																																																																															
APC	324	MSKCC	GRCh37	5	112170746	112170746	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	63	542	0	ENST00000257430.4:c.1842del	p.Leu616TrpfsTer14	p.L616Wfs*14	ENST00000257430	NM_000038.5	614	gcA/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0025070-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			321	325	621	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653795	89653817	+	frameshift_variant	Frame_Shift_Del	DEL	CATTATTGCTATGGGATTTCCTG	CATTATTGCTATGGGATTTCCTG	-			P-0025070-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			168	131	395	0	ENST00000371953.3:c.95_117del	p.Ile32ArgfsTer4	p.I32Rfs*4	ENST00000371953	NM_000314.4	31	aaCATTATTGCTATGGGATTTCCTGca/aaca																																																																															
RB1	5925	MSKCC	GRCh37	13	48877685	48878056	+	coding_sequence_variant,5_prime_UTR_variant	In_Frame_Del	DEL	CACGTCCGGGCCGCGCCGGATGCCTCCTGGAAGGCGCCTGGACCCACGCCAGGTTTCCCAGTTTAATTCCTCATGACTTAGCGTCCCAGCCCGCGCACCGACCAGCGCCCCAGTTCCCCACAGACGCCGGCGGGCCCGGGAGCCTCGCGGACGTGACGCCGCGGGCGGAAGTGACGTTTTCCCGCGGTTGGACGCGGCGCTCAGTTGCCGGGCGGGGGAGGGCGCGTCCGGTTTTTCTCAGGGGACGTTGAAATTATTTTTGTAACGGGAGTCGGGAGAGGACGGGGCGTGCCCCGACGTGCGCGCGCGTCGTCCTCCCCGGCGCTCCTCCACAGCTCGCTGGCTCCCGCCGCGGAAAGGCGTCATGCCGCC	CACGTCCGGGCCGCGCCGGATGCCTCCTGGAAGGCGCCTGGACCCACGCCAGGTTTCCCAGTTTAATTCCTCATGACTTAGCGTCCCAGCCCGCGCACCGACCAGCGCCCCAGTTCCCCACAGACGCCGGCGGGCCCGGGAGCCTCGCGGACGTGACGCCGCGGGCGGAAGTGACGTTTTCCCGCGGTTGGACGCGGCGCTCAGTTGCCGGGCGGGGGAGGGCGCGTCCGGTTTTTCTCAGGGGACGTTGAAATTATTTTTGTAACGGGAGTCGGGAGAGGACGGGGCGTGCCCCGACGTGCGCGCGCGTCGTCCTCCCCGGCGCTCCTCCACAGCTCGCTGGCTCCCGCCGCGGAAAGGCGTCATGCCGCC	-			P-0025070-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			3	207	4	0				ENST00000267163	NM_000321.2																																																																																	
RB1	5925	MSKCC	GRCh37	13	48878115	48878120	+	inframe_deletion	In_Frame_Del	DEL	CCGCCG	CCGCCG	-			P-0025070-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			79	289	91	0	ENST00000267163.4:c.75_80del	p.Pro28_Pro29del	p.P28_P29del	ENST00000267163	NM_000321.2	23	CCGCCG/-																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944419	40944419	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs770482461		P-0025070-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			644	228	621	0	ENST00000373198.4:c.2083C>G	p.Leu695Val	p.L695V	ENST00000373198	NM_133170.3	695	Ctc/Gtc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119634895	119634895	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025070-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			298	108	249	0	ENST00000316626.5:c.604G>T	p.Gly202Ter	p.G202*	ENST00000316626		202	Gga/Tga																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119634894	119634895	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025070-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			302	104	249	0	ENST00000316626.5:c.604_605insT	p.Gly202ValfsTer22	p.G202Vfs*22	ENST00000316626		202	gga/gTga																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866353	42866355	+	frameshift_variant	Frame_Shift_Del	DEL	GAC	GAC	AA			P-0025070-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			775	138	622	2	ENST00000398585.3:c.277_279delinsTT	p.Val93PhefsTer2	p.V93Ffs*2	ENST00000398585	NM_001135099.1	93	GTC/TT																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0026453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	122	587	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577599	7577600	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	389	686	4	ENST00000269305.4:c.681dup	p.Asp228Ter	p.D228*	ENST00000269305	NM_001126112.2	227	-/T																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	307	591	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0027706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	62	271	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0028660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	48	327	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0028660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	21	273	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0028660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	40	326	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0028660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	38	144	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	60	334	0	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32172028	32172028	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761216718		P-0028660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	31	328	0	ENST00000375023.3:c.3004C>T	p.Arg1002Cys	p.R1002C	ENST00000375023	NM_004557.3	1002	Cgc/Tgc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0029115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	53	368	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
AR	367	MSKCC	GRCh37	X	66765047	66765047	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1297947716		P-0029115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	74	646	1	ENST00000374690.3:c.59G>A	p.Arg20Gln	p.R20Q	ENST00000374690	NM_000044.3	20	cGa/cAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163588	47163589	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0029115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	44	286	0	ENST00000409792.3:c.2537_2538del	p.Lys846IlefsTer4	p.K846Ifs*4	ENST00000409792	NM_014159.6	846	aAA/a																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134555	41134555	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	71	352	0	ENST00000379561.5:c.1073C>G	p.Thr358Ser	p.T358S	ENST00000379561	NM_002015.3	358	aCt/aGt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162406	47162413	+	frameshift_variant	Frame_Shift_Del	DEL	AGAGGAAG	AGAGGAAG	-			P-0029115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	56	322	0	ENST00000409792.3:c.3713_3720del	p.Ser1238LeufsTer2	p.S1238Lfs*2	ENST00000409792	NM_014159.6	1238	tCTTCCTCT/t																																																																															
STAG2	10735	MSKCC	GRCh37	X	123205156	123205156	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	50	305	1	ENST00000218089.9:c.2516A>G	p.Asp839Gly	p.D839G	ENST00000218089	NM_001042749.1	839	gAt/gGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105436	27105584	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGAGGTCTCTCAAGTCAATAATTCTGTTCTTAGGCCACTTTTCTCCCTTAATTTATTTCCTGTTCTTTCTCTTTTTAGCTCCCAGGGTTGCTAGAGCTCCTTGTAGAATATTTCCGACGATGCCTGATTGAGATCTTTGGCATTTTAAA	GGAGGTCTCTCAAGTCAATAATTCTGTTCTTAGGCCACTTTTCTCCCTTAATTTATTTCCTGTTCTTTCTCTTTTTAGCTCCCAGGGTTGCTAGAGCTCCTTGTAGAATATTTCCGACGATGCCTGATTGAGATCTTTGGCATTTTAAA	-			P-0029336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	21	90	0	ENST00000324856.7:c.5125-74_5199del		p.X1709_splice	ENST00000324856	NM_006015.4	1709																																																																																
RIT1	6016	MSKCC	GRCh37	1	155874250	155874250	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	67	508	0	ENST00000368323.3:c.281A>T	p.Glu94Val	p.E94V	ENST00000368323	NM_006912.5	94	gAa/gTa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533818	63533818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	180	439	0	ENST00000307078.5:c.1336G>A	p.Val446Ile	p.V446I	ENST00000307078	NM_004655.3	446	Gtc/Atc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860354	151860354	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	106	425	0	ENST00000262189.6:c.10308G>C	p.Met3436Ile	p.M3436I	ENST00000262189	NM_170606.2	3436	atG/atC																																																																															
ABL1	25	MSKCC	GRCh37	9	133760456	133760456	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	91	539	0	ENST00000318560.5:c.2779G>C	p.Val927Leu	p.V927L	ENST00000318560	NM_005157.4	927	Gtc/Ctc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938455	44938456	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0029336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	20	260	0	ENST00000377967.4:c.3007_3008dup	p.Gln1003HisfsTer46	p.Q1003Hfs*46	ENST00000377967	NM_021140.2	1001	-/AC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	472	415	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0029982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	202	708	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134992	2134992	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774441486		P-0029982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	228	692	1	ENST00000219476.3:c.4534G>A	p.Asp1512Asn	p.D1512N	ENST00000219476	NM_000548.3	1512	Gac/Aac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11129645	11129691	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGGCGTACGAGTTTGACAAGTGGGCCCCCTCCGTGGTGAAGGTGT	CTGGGCGTACGAGTTTGACAAGTGGGCCCCCTCCGTGGTGAAGGTGT	-			P-0029982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	61	575	0	ENST00000344626.4:c.2453_2499del	p.Trp818LeufsTer111	p.W818Lfs*111	ENST00000344626	NM_003072.3	817	aaCTGGGCGTACGAGTTTGACAAGTGGGCCCCCTCCGTGGTGAAGGTGTct/aact																																																																															
EP300	2033	MSKCC	GRCh37	22	41527514	41527514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	222	624	0	ENST00000263253.7:c.1405G>A	p.Ala469Thr	p.A469T	ENST00000263253	NM_001429.3	469	Gca/Aca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971198	21971199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0029982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	113	369	0	ENST00000304494.5:c.158_159dup	p.Met54Ter	p.M54*	ENST00000304494	NM_000077.4	53	-/TG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	334	584	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0031103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	158	307	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0031103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	50	206	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
CALR	811	MSKCC	GRCh37	19	13049996	13049996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	83	431	0	ENST00000316448.5:c.140G>A	p.Gly47Asp	p.G47D	ENST00000316448	NM_004343.3	47	gGc/gAc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691842	30691842	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	114	343	1	ENST00000359013.4:c.419A>T	p.Asp140Val	p.D140V	ENST00000359013	NM_001024847.2	140	gAt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0031174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	357	836	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0031174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	252	356	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921551	178921551	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	99	525	0	ENST00000263967.3:c.1033A>T	p.Asn345Tyr	p.N345Y	ENST00000263967	NM_006218.2	345	Aat/Tat																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120502050	120502050	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	128	678	0	ENST00000256646.2:c.1991A>C	p.Asn664Thr	p.N664T	ENST00000256646	NM_024408.3	664	aAt/aCt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18473931	18473931	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	118	619	0	ENST00000266497.5:c.1173A>C	p.Gln391His	p.Q391H	ENST00000266497		391	caA/caC																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923469	9923469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs775819322		P-0031174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	257	703	0	ENST00000330684.3:c.1818G>T	p.Trp606Cys	p.W606C	ENST00000330684	NM_001134407.1	606	tgG/tgT																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448604	89448604	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	275	706	0	ENST00000336596.2:c.1568A>G	p.Lys523Arg	p.K523R	ENST00000336596	NM_005233.5	523	aAg/aGg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2979523	2979523	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	103	695	0	ENST00000396946.4:c.724del	p.Glu242AsnfsTer10	p.E242Nfs*10	ENST00000396946	NM_032415.4	242	Gaa/aa																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986652	36986653	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	31	138	0	ENST00000354822.5:c.1036dup	p.His346ProfsTer93	p.H346Pfs*93	ENST00000354822	NM_001079668.2	346	cac/cCac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828780	72828780	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	131	577	0	ENST00000268489.5:c.7801G>C	p.Ala2601Pro	p.A2601P	ENST00000268489	NM_006885.3	2601	Gcc/Ccc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44937644	44937644	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs1471773267		P-0031229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	52	222	0	ENST00000377967.4:c.2833-1G>T		p.X945_splice	ENST00000377967	NM_021140.2	945																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	74	540	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0031530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	122	341	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0031530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	119	644	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797271	135797271	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs118203410		P-0031530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	50	353	1	ENST00000298552.3:c.598G>A	p.Val200Ile	p.V200I	ENST00000298552	NM_001162426.1	200	Gtc/Atc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938558	44938559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CACAT			P-0031530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	81	538	0	ENST00000377967.4:c.3110_3111insTCACA	p.Gln1037HisfsTer13	p.Q1037Hfs*13	ENST00000377967	NM_021140.2	1036	gca/gCACATca																																																																															
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0031812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	128	807	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0032094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	103	513	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	41	242	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249510	153249510	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1157879635		P-0032094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	101	601	0	ENST00000281708.4:c.1268G>T	p.Gly423Val	p.G423V	ENST00000281708	NM_033632.3	423	gGa/gTa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459531	50459531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	27	329	0	ENST00000331340.3:c.820C>T	p.Arg274Cys	p.R274C	ENST00000331340	NM_006060.4	274	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0032094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	210	790	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212248711	212248711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	59	522	1	ENST00000342788.4:c.3556C>T	p.Pro1186Ser	p.P1186S	ENST00000342788	NM_005235.2	1186	Ccc/Tcc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911462	134911462	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs775938790		P-0032094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	35	549	0	ENST00000398015.3:c.1927A>G	p.Lys643Glu	p.K643E	ENST00000398015	NM_004441.4	643	Aag/Gag																																																																															
HGF	3082	MSKCC	GRCh37	7	81355326	81355326	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	27	375	0	ENST00000222390.5:c.1048C>T	p.Arg350Ter	p.R350*	ENST00000222390	NM_000601.4	350	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0032285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	163	385	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518301	204518301	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1405649744		P-0032285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	101	477	1	ENST00000367182.3:c.964C>T	p.Arg322Cys	p.R322C	ENST00000367182	NM_001278516.1	322	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876660825		P-0032285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	265	551	0	ENST00000269305.4:c.569C>G	p.Pro190Arg	p.P190R	ENST00000269305	NM_001126112.2	190	cCt/cGt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348163	348163	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1436071949		P-0032285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	127	632	1	ENST00000262320.3:c.1343C>T	p.Pro448Leu	p.P448L	ENST00000262320	NM_003502.3	448	cCg/cTg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62324219	62324221	+	inframe_deletion,NMD_transcript_variant	In_Frame_Del	DEL	AGG	AGG	-			P-0032285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	370	730	0	ENST00000482936.1:c.2716_2718del	p.Glu906del	p.E906del	ENST00000482936		905	cAGGag/cag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	38	273	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099187	157099195	+	inframe_deletion	In_Frame_Del	DEL	GCGGCGGCA	GCGGCGGCA	-	rs769480864		P-0033000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	54	284	0	ENST00000346085.5:c.133_141del	p.Ala45_Ala47del	p.A45_A47del	ENST00000346085	NM_020732.3	42	GCGGCGGCA/-																																																																															
CDH1	999	MSKCC	GRCh37	16	68845757	68845757	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587780784		P-0033000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	71	293	0	ENST00000261769.5:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000261769	NM_004360.3	335	Cga/Tga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32905152	32905152	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	26	295	0	ENST00000380152.3:c.778G>C	p.Glu260Gln	p.E260Q	ENST00000380152		260	Gaa/Caa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819225	3819225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	86	444	0	ENST00000262367.5:c.3010G>C	p.Glu1004Gln	p.E1004Q	ENST00000262367	NM_004380.2	1004	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0033000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	144	620	1	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861892	57861892	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376293205		P-0033000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	36	475	0	ENST00000228682.2:c.1193G>A	p.Arg398His	p.R398H	ENST00000228682	NM_005269.2	398	cGt/cAt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117313	115117315	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0033000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	26	243	0	ENST00000257566.3:c.859_861del	p.Asp287del	p.D287del	ENST00000257566	NM_016569.3	287	GAT/-																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812305	212812305	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	10	234	0	ENST00000342788.4:c.271C>G	p.Leu91Val	p.L91V	ENST00000342788	NM_005235.2	91	Ctt/Gtt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561469	9561469	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	104	417	0	ENST00000353224.5:c.313C>G	p.Pro105Ala	p.P105A	ENST00000353224	NM_177990.2	105	Cca/Gca																																																																															
CARD11	84433	MSKCC	GRCh37	7	2951863	2951863	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	30	605	0	ENST00000396946.4:c.3087G>C	p.Lys1029Asn	p.K1029N	ENST00000396946	NM_032415.4	1029	aaG/aaC																																																																															
CBL	867	MSKCC	GRCh37	11	119148875	119148875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs397517076		P-0034638-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			214	36	250	0	ENST00000264033.4:c.1096-1G>T		p.X366_splice	ENST00000264033	NM_005188.3	366																																																																																
GNAS	2778	MSKCC	GRCh37	20	57484597	57484597	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs137854533		P-0034638-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			502	41	467	0	ENST00000371085.3:c.681G>T	p.Gln227His	p.Q227H	ENST00000371085	NM_000516.4	227	caG/caT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038783	47038783	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034638-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			578	69	710	1	ENST00000329236.7:c.559G>T	p.Glu187Ter	p.E187*	ENST00000329236	NM_001204466.1	187	Gag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730831	40730831	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs372700928		P-0034638-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			654	92	673	0	ENST00000373198.4:c.3704G>T	p.Arg1235Leu	p.R1235L	ENST00000373198	NM_133170.3	1235	cGc/cTc																																																																															
ATM	472	MSKCC	GRCh37	11	108200993	108200993	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034638-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			354	48	344	0	ENST00000278616.4:c.7360G>C	p.Ala2454Pro	p.A2454P	ENST00000278616	NM_000051.3	2454	Gca/Cca																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031876	10031876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1452471642		P-0034638-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			539	62	582	0	ENST00000330684.3:c.947C>T	p.Ala316Val	p.A316V	ENST00000330684	NM_001134407.1	316	gCc/gTc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56491645	56491645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	76	559	2	ENST00000267101.3:c.2537G>T	p.Ser846Ile	p.S846I	ENST00000267101	NM_001982.3	846	aGt/aTt																																																																															
CBFB	865	MSKCC	GRCh37	16	67070573	67070573	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	36	270	0	ENST00000412916.2:c.197T>A	p.Leu66His	p.L66H	ENST00000412916		66	cTc/cAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68772217	68772217	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs865838543		P-0035199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	77	931	0	ENST00000261769.5:c.66C>A	p.Cys22Ter	p.C22*	ENST00000261769	NM_004360.3	22	tgC/tgA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0035895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	80	418	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0035895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	248	688	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827475	72827475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	151	850	1	ENST00000268489.5:c.9106C>T	p.Arg3036Trp	p.R3036W	ENST00000268489	NM_006885.3	3036	Cgg/Tgg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692889	89692889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	252	473	0	ENST00000371953.3:c.373A>G	p.Lys125Glu	p.K125E	ENST00000371953	NM_000314.4	125	Aaa/Gaa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554159	63554159	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	217	877	0	ENST00000307078.5:c.580G>C	p.Asp194His	p.D194H	ENST00000307078	NM_004655.3	194	Gat/Cat																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526700	106526700	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	166	507	0	ENST00000359195.3:c.2993C>G	p.Ser998Cys	p.S998C	ENST00000359195	NM_002649.2	998	tCt/tGt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350431	89350431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	544	1003	0	ENST00000301030.4:c.2519G>T	p.Arg840Leu	p.R840L	ENST00000301030	NM_001256183.1	840	cGg/cTg																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156741	20156741	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1449534841		P-0037043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	287	462	0	ENST00000379607.5:c.17-1G>A		p.X6_splice	ENST00000379607	NM_001412.3	6																																																																																
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0037126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	220	680	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	244	571	0	ENST00000347630.2:c.393G>C	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427984	49427984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	30	741	0	ENST00000301067.7:c.10606C>T	p.Arg3536Cys	p.R3536C	ENST00000301067	NM_003482.3	3536	Cgc/Tgc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026157	71026157	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	230	513	0	ENST00000318789.4:c.1465A>G	p.Asn489Asp	p.N489D	ENST00000318789	NM_032682.5	489	Aat/Gat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0037152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	397	260	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577506	7577507	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	493	488	0	ENST00000269305.4:c.774dup	p.Asp259ArgfsTer5	p.D259Rfs*5	ENST00000269305	NM_001126112.2	258	-/A																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164631	36164632	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	381	410	0	ENST00000300305.3:c.1243dup	p.Gln415ProfsTer185	p.Q415Pfs*185	ENST00000300305		415	cag/cCag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115871	8115872	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0037175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	138	499	0	ENST00000346208.3:c.1219_1220del	p.Ser407AlafsTer99	p.S407Afs*99	ENST00000346208		406	aTC/a																																																																															
AR	367	MSKCC	GRCh37	X	66863220	66863221	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	83	484	0	ENST00000374690.3:c.1740dup	p.Lys581GlnfsTer9	p.K581Qfs*9	ENST00000374690	NM_000044.3	580	tgc/tgCc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	63	466	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	78	711	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	45	438	1	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	33	355	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	79	670	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143045772	143045772	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145209328		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	66	658	0	ENST00000262992.4:c.1862C>T	p.Thr621Met	p.T621M	ENST00000262992	NM_001101669.1	621	aCg/aTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	113	939	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	99	548	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	97	844	6	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484611	57484611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	106	769	0	ENST00000371085.3:c.695G>A	p.Arg232His	p.R232H	ENST00000371085	NM_000516.4	232	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913294		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	73	680	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587776934		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	83	751	0	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332273	70332273	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	47	441	1	ENST00000373644.4:c.184del	p.Thr62GlnfsTer13	p.T62Qfs*13	ENST00000373644	NM_030625.2	60	Aaa/aa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99456467	99456467	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56248469		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	56	539	0	ENST00000268035.6:c.1784G>A	p.Arg595His	p.R595H	ENST00000268035	NM_000875.3	595	cGt/cAt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289196	33289196	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771284147		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	100	624	0	ENST00000374542.5:c.356G>A	p.Arg119Gln	p.R119Q	ENST00000374542	NM_001141970.1	119	cGg/cAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	108	856	3	ENST00000407977.2:c.349del	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
PARK2	5071	MSKCC	GRCh37	6	161781122	161781122	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	105	686	3	ENST00000366898.1:c.1283del	p.Asn428MetfsTer7	p.N428Mfs*7	ENST00000366898	NM_004562.2	428	aAt/at																																																																															
ATR	545	MSKCC	GRCh37	3	142261555	142261555	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	36	508	1	ENST00000350721.4:c.3402del	p.Phe1134LeufsTer6	p.F1134Lfs*6	ENST00000350721	NM_001184.3	1134	ttT/tt																																																																															
BLM	641	MSKCC	GRCh37	15	91347484	91347484	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	72	657	1	ENST00000355112.3:c.3651del	p.Lys1217AsnfsTer62	p.K1217Nfs*62	ENST00000355112	NM_000057.2	1216	Aaa/aa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	173	712	8	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231610	5231611	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	19	178	0	ENST00000357368.4:c.1865dup	p.Gln623SerfsTer4	p.Q623Sfs*4	ENST00000357368	NM_002850.3	622	cct/ccCt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	89	628	2	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259043	16259043	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	75	679	0	ENST00000375759.3:c.6313del	p.Ala2105LeufsTer33	p.A2105Lfs*33	ENST00000375759	NM_015001.2	2103	aGg/ag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431545	49431545	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	99	852	0	ENST00000301067.7:c.9594del	p.Ser3199AlafsTer3	p.S3199Afs*3	ENST00000301067	NM_003482.3	3198	ccC/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214871	36214871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	134	906	0	ENST00000222270.7:c.3302del	p.Pro1101LeufsTer81	p.P1101Lfs*81	ENST00000222270	NM_014727.1	1099	ggC/gg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166821	32166821	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1041758474		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	112	957	1	ENST00000375023.3:c.4417C>T	p.Arg1473Cys	p.R1473C	ENST00000375023	NM_004557.3	1473	Cgt/Tgt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15284970	15284970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	126	968	1	ENST00000263388.2:c.4645G>A	p.Ala1549Thr	p.A1549T	ENST00000263388	NM_000435.2	1549	Gcg/Acg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244148	153244148	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	89	717	0	ENST00000281708.4:c.2009del	p.Gly670GlufsTer37	p.G670Efs*37	ENST00000281708	NM_033632.3	670	gGa/ga																																																																															
SPOP	8405	MSKCC	GRCh37	17	47685288	47685288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	56	500	0	ENST00000347630.2:c.662G>A	p.Arg221His	p.R221H	ENST00000347630	NM_001007230.1	221	cGt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214714	36214714	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	86	646	0	ENST00000222270.7:c.3145del	p.Ala1049ArgfsTer133	p.A1049Rfs*133	ENST00000222270	NM_014727.1	1047	cGg/cg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793290	242793291	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	126	1109	0	ENST00000334409.5:c.786dup	p.Ala263ArgfsTer7	p.A263Rfs*7	ENST00000334409	NM_005018.2	262	-/C																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105737	27105737	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	57	454	0	ENST00000324856.7:c.5351del	p.Asn1784MetfsTer5	p.N1784Mfs*5	ENST00000324856	NM_006015.4	1783	gAa/ga																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724362	112724362	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	99	681	1	ENST00000369452.4:c.252del	p.Lys84AsnfsTer7	p.K84Nfs*7	ENST00000369452	NM_007373.3	82	agA/ag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416191	416191	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	77	556	0	ENST00000399788.2:c.3995del	p.Pro1332LeufsTer26	p.P1332Lfs*26	ENST00000399788	NM_001042603.1	1332	cCt/ct																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870838	12870838	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	50	249	0	ENST00000228872.4:c.65A>C	p.Glu22Ala	p.E22A	ENST00000228872	NM_004064.3	22	gAg/gCg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18658322	18658322	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	94	717	0	ENST00000266497.5:c.3127A>G	p.Lys1043Glu	p.K1043E	ENST00000266497		1043	Aag/Gag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244983	46244983	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	95	775	0	ENST00000334344.6:c.3077T>C	p.Val1026Ala	p.V1026A	ENST00000334344	NM_152641.2	1026	gTa/gCa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426664	49426664	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	47	507	0	ENST00000301067.7:c.11824C>T	p.Gln3942Ter	p.Q3942*	ENST00000301067	NM_003482.3	3942	Caa/Taa																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50484319	50484319	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150612896		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	99	823	0	ENST00000394963.4:c.1079G>A	p.Arg360Gln	p.R360Q	ENST00000394963	NM_003076.4	360	cGg/cAg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73349480	73349480	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1048864282		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	65	586	0	ENST00000377767.4:c.856G>A	p.Ala286Thr	p.A286T	ENST00000377767	NM_014953.3	286	Gct/Act																																																																															
NUP93	9688	MSKCC	GRCh37	16	56792460	56792460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	71	618	0	ENST00000308159.5:c.190C>A	p.Leu64Ile	p.L64I	ENST00000308159	NM_014669.4	64	Ctc/Atc																																																																															
CDH1	999	MSKCC	GRCh37	16	68771353	68771353	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	71	489	0	ENST00000261769.5:c.35T>G	p.Leu12Arg	p.L12R	ENST00000261769	NM_004360.3	12	cTg/cGg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883239	37883239	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377602610		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	125	846	5	ENST00000269571.5:c.3142C>T	p.Arg1048Cys	p.R1048C	ENST00000269571		1048	Cgc/Tgc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120399	70120400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	163	1161	0	ENST00000245479.2:c.1402dup	p.Tyr468LeufsTer110	p.Y468Lfs*110	ENST00000245479	NM_000346.3	467	-/T																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732431	74732431	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	66	407	0	ENST00000359995.5:c.478A>G	p.Thr160Ala	p.T160A	ENST00000359995	NM_001195427.1	160	Acc/Gcc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222076	2222076	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	151	1121	0	ENST00000398665.3:c.2908A>G	p.Ser970Gly	p.S970G	ENST00000398665	NM_032482.2	970	Agc/Ggc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10254608	10254608	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs760683699		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	106	772	0	ENST00000340748.4:c.2902C>A	p.Leu968Met	p.L968M	ENST00000340748		968	Ctg/Atg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11169557	11169557	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	92	615	0	ENST00000344626.4:c.4627G>T	p.Gly1543Cys	p.G1543C	ENST00000344626	NM_003072.3	1543	Ggc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276860	15276861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	73	889	0	ENST00000263388.2:c.5403_5404dup	p.Ala1802GlyfsTer24	p.A1802Gfs*24	ENST00000263388	NM_000435.2	1802	gct/gGGct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211494	36211495	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	64	672	2	ENST00000222270.7:c.1249dup	p.Leu417ProfsTer133	p.L417Pfs*133	ENST00000222270	NM_014727.1	415	-/C																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220945	36220945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	52	502	0	ENST00000222270.7:c.4995G>A	p.Met1665Ile	p.M1665I	ENST00000222270	NM_014727.1	1665	atG/atA																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213183	39213185	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	107	1181	0	ENST00000402219.2:c.3782_3784del	p.Pro1261del	p.P1261del	ENST00000402219	NM_005633.3	1261	cCTCaa/caa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39294858	39294858	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	62	460	0	ENST00000402219.2:c.124G>T	p.Asp42Tyr	p.D42Y	ENST00000402219	NM_005633.3	42	Gat/Tat																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116254	209116254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	53	361	0	ENST00000345146.2:c.22G>T	p.Gly8Cys	p.G8C	ENST00000345146	NM_005896.2	8	Ggt/Tgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484753	57484753	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	85	732	0	ENST00000371085.3:c.733A>G	p.Ile245Val	p.I245V	ENST00000371085	NM_000516.4	245	Atc/Gtc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163157	47163157	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1211480425		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	63	552	0	ENST00000409792.3:c.2969T>C	p.Val990Ala	p.V990A	ENST00000409792	NM_014159.6	990	gTg/gCg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71090585	71090585	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	88	657	0	ENST00000318789.4:c.763A>C	p.Thr255Pro	p.T255P	ENST00000318789	NM_032682.5	255	Acc/Ccc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902779	1902779	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs140401180		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	88	759	2	ENST00000382895.3:c.398T>C	p.Met133Thr	p.M133T	ENST00000382895	NM_133330.2	133	aTg/aCg																																																																															
KDR	3791	MSKCC	GRCh37	4	55981508	55981509	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	71	659	0	ENST00000263923.4:c.428dup	p.Asn143LysfsTer31	p.N143Kfs*31	ENST00000263923	NM_002253.2	143	aac/aaAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178659	56178659	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	34	305	0	ENST00000399503.3:c.3635del	p.Asn1212MetfsTer33	p.N1212Mfs*33	ENST00000399503	NM_005921.1	1211	gAa/ga																																																																															
APC	324	MSKCC	GRCh37	5	112137003	112137003	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772806807		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	61	500	0	ENST00000257430.4:c.757G>A	p.Gly253Ser	p.G253S	ENST00000257430	NM_000038.5	253	Ggc/Agc																																																																															
STK19	8859	MSKCC	GRCh37	6	31948472	31948472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745355598		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	46	530	0	ENST00000375331.2:c.943C>T	p.Arg315Trp	p.R315W	ENST00000375331	NM_004197.1	315	Cgg/Tgg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300039	137300040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	86	940	0	ENST00000481739.1:c.330_331dup	p.Leu111ProfsTer58	p.L111Pfs*58	ENST00000481739	NM_002957.4	108	-/CC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	317	464	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0037253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	296	592	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
RB1	5925	MSKCC	GRCh37	13	48953760	48953760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913302		P-0037253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	145	257	0	ENST00000267163.4:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000267163	NM_000321.2	455	Cga/Tga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799162	88799162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	72	423	1	ENST00000360948.2:c.223G>A	p.Asp75Asn	p.D75N	ENST00000360948	NM_001012338.2	75	Gac/Aac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061229	38061237	+	inframe_deletion	In_Frame_Del	DEL	ACATGTTGC	ACATGTTGC	-			P-0037277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	195	596	0	ENST00000250448.2:c.752_760del	p.Gly251_Phe254delinsVal	p.G251_F254delinsV	ENST00000250448	NM_004496.3	251	gGCAACATGTtc/gtc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18524215	18524215	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769408892		P-0037283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	36	585	0	ENST00000266497.5:c.1727C>T	p.Ala576Val	p.A576V	ENST00000266497		576	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0037351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	239	701	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0037351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	198	762	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057936	27057937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1415146710		P-0037351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	180	622	0	ENST00000324856.7:c.1650dup	p.Tyr551LeufsTer72	p.Y551Lfs*72	ENST00000324856	NM_006015.4	548	-/C																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0037351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	80	334	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11184589	11184589	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	202	729	0	ENST00000361445.4:c.6628G>C	p.Ala2210Pro	p.A2210P	ENST00000361445	NM_004958.3	2210	Gcc/Ccc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730904	40730904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770182876		P-0037351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	128	649	1	ENST00000373198.4:c.3631G>A	p.Glu1211Lys	p.E1211K	ENST00000373198	NM_133170.3	1211	Gag/Aag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86665709	86665709	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	115	348	0	ENST00000274376.6:c.1690C>A	p.Gln564Lys	p.Q564K	ENST00000274376	NM_002890.2	564	Caa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	117	327	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0037366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	305	475	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120509086	120509086	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	174	317	0	ENST00000256646.2:c.1480G>C	p.Glu494Gln	p.E494Q	ENST00000256646	NM_024408.3	494	Gaa/Caa																																																																															
RB1	5925	MSKCC	GRCh37	13	48923156	48923156	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	116	264	0	ENST00000267163.4:c.606del	p.Glu204LysfsTer10	p.E204Kfs*10	ENST00000267163	NM_000321.2	202	Aaa/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	65	385	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750600586		P-0037400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	46	746	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	42	347	0	ENST00000304494.5:c.172del	p.Arg58GlufsTer88	p.R58Efs*88	ENST00000304494	NM_000077.4	58	Cga/ga																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955109	17955109	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140784576		P-0037400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	46	677	2	ENST00000458235.1:c.118C>T	p.Arg40Cys	p.R40C	ENST00000458235	NM_000215.3	40	Cgc/Tgc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974676	21974676	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0037400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	34	404	0	ENST00000304494.5:c.150+1G>C		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0037401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	90	258	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879229	151879229	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs763438739		P-0037401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	70	411	0	ENST00000262189.6:c.5716C>T	p.Arg1906Ter	p.R1906*	ENST00000262189	NM_170606.2	1906	Cga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111564	8111564	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	C			P-0037401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	133	400	1	ENST00000346208.3:c.1047+3A>C		p.X349_splice	ENST00000346208		349																																																																																
CBFB	865	MSKCC	GRCh37	16	67063633	67063633	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	104	244	1	ENST00000412916.2:c.83del	p.Lys28SerfsTer61	p.K28Sfs*61	ENST00000412916		28	Aag/ag																																																																															
ACVR1	90	MSKCC	GRCh37	2	158636993	158636993	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	169	456	0	ENST00000263640.3:c.187T>C	p.Phe63Leu	p.F63L	ENST00000263640	NM_001105.4	63	Ttc/Ctc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775782	9775782	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767750196		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	42	679	0	ENST00000377346.4:c.325G>A	p.Val109Met	p.V109M	ENST00000377346	NM_005026.3	109	Gtg/Atg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256679	16256679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	24	469	0	ENST00000375759.3:c.3944G>A	p.Ser1315Asn	p.S1315N	ENST00000375759	NM_015001.2	1315	aGc/aAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	86	501	2	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100833	27100834	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	32	456	0	ENST00000324856.7:c.4117dup	p.Met1373AsnfsTer72	p.M1373Nfs*72	ENST00000324856	NM_006015.4	1372	cca/ccAa																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599234	28599234	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	58	799	0	ENST00000253063.3:c.685del	p.Gln229ArgfsTer18	p.Q229Rfs*18	ENST00000253063	NM_031459.4	227	gCc/gc																																																																															
STK40	83931	MSKCC	GRCh37	1	36807433	36807433	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	47	713	2	ENST00000373129.3:c.1231C>T	p.Arg411Ter	p.R411*	ENST00000373129	NM_032017.1	411	Cga/Tga																																																																															
STK40	83931	MSKCC	GRCh37	1	36809504	36809504	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1412240338		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	52	693	0	ENST00000373129.3:c.961G>A	p.Ala321Thr	p.A321T	ENST00000373129	NM_032017.1	321	Gcc/Acc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724526	162724526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	87	512	0	ENST00000367921.3:c.298G>A	p.Val100Met	p.V100M	ENST00000367921	NM_006182.2	100	Gtg/Atg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740213	162740213	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	24	415	0	ENST00000367921.3:c.1415A>G	p.Asp472Gly	p.D472G	ENST00000367921	NM_006182.2	472	gAt/gGt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201980293	201980293	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	48	698	1	ENST00000359651.3:c.33del	p.Phe11LeufsTer32	p.F11Lfs*32	ENST00000359651		10	aTt/at																																																																															
RET	5979	MSKCC	GRCh37	10	43600556	43600556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	44	712	0	ENST00000355710.3:c.782C>T	p.Thr261Ile	p.T261I	ENST00000355710	NM_020975.4	261	aCc/aTc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104268987	104268987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	144	640	1	ENST00000369902.3:c.244G>A	p.Ala82Thr	p.A82T	ENST00000369902	NM_016169.3	82	Gct/Act																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	103	332	11	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	170	866	2	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	129	698	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	118	597	1	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	66	452	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	51	450	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	47	684	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856655	111856655	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1014425313		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	35	318	0	ENST00000341259.2:c.706G>A	p.Val236Met	p.V236M	ENST00000341259	NM_005475.2	236	Gtg/Atg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115111992	115111992	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	56	533	0	ENST00000257566.3:c.1748A>C	p.Gln583Pro	p.Q583P	ENST00000257566	NM_016569.3	583	cAg/cCg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	160	619	6	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
POLE	5426	MSKCC	GRCh37	12	133201517	133201517	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	58	666	0	ENST00000320574.5:c.6721G>T	p.Asp2241Tyr	p.D2241Y	ENST00000320574	NM_006231.2	2241	Gac/Tac																																																																															
CDK8	1024	MSKCC	GRCh37	13	26828867	26828867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	49	323	0	ENST00000381527.3:c.89G>A	p.Gly30Asp	p.G30D	ENST00000381527	NM_001260.1	30	gGc/gAc																																																																															
RB1	5925	MSKCC	GRCh37	13	48881488	48881489	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	224	263	0	ENST00000267163.4:c.219_220dup	p.Ala74GlufsTer4	p.A74Efs*4	ENST00000267163	NM_000321.2	70	-/AG																																																																															
RB1	5925	MSKCC	GRCh37	13	48951110	48951110	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	27	275	0	ENST00000267163.4:c.1272C>A	p.Tyr424Ter	p.Y424*	ENST00000267163	NM_000321.2	424	taC/taA																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434746	110434746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	50	708	0	ENST00000375856.3:c.3655C>T	p.Pro1219Ser	p.P1219S	ENST00000375856	NM_003749.2	1219	Ccg/Tcg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986896	36986896	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	79	437	0	ENST00000354822.5:c.793G>T	p.Gly265Cys	p.G265C	ENST00000354822	NM_001079668.2	265	Ggc/Tgc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38614463	38614463	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	29	432	0	ENST00000299084.4:c.234del	p.Asp79ThrfsTer42	p.D79Tfs*42	ENST00000299084	NM_152594.2	77	Aaa/aa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43730536	43730536	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	81	435	0	ENST00000382044.4:c.3177del	p.Thr1060ProfsTer36	p.T1060Pfs*36	ENST00000382044	NM_001141980.1	1059	ccC/cc																																																																															
BLM	641	MSKCC	GRCh37	15	91347484	91347484	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	68	443	0	ENST00000355112.3:c.3651del	p.Lys1217AsnfsTer62	p.K1217Nfs*62	ENST00000355112	NM_000057.2	1216	Aaa/aa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99451928	99451928	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	66	282	0	ENST00000268035.6:c.1262A>G	p.Tyr421Cys	p.Y421C	ENST00000268035	NM_000875.3	421	tAc/tGc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639789	3639789	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373107728		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	43	805	0	ENST00000294008.3:c.3850G>A	p.Val1284Met	p.V1284M	ENST00000294008	NM_032444.2	1284	Gtg/Atg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641093	3641093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	67	1079	0	ENST00000294008.3:c.2546C>T	p.Ala849Val	p.A849V	ENST00000294008	NM_032444.2	849	gCa/gTa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs774532876		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	48	792	1	ENST00000294008.3:c.1406del	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779057	3779057	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	53	549	0	ENST00000262367.5:c.5991del	p.Val1998Ter	p.V1998*	ENST00000262367	NM_004380.2	1997	ccC/cc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779211	3779211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783507		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	50	449	0	ENST00000262367.5:c.5837del	p.Pro1946HisfsTer30	p.P1946Hfs*30	ENST00000262367	NM_004380.2	1946	cCa/ca																																																																															
CDH1	999	MSKCC	GRCh37	16	68842405	68842405	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	51	518	0	ENST00000261769.5:c.466T>C	p.Trp156Arg	p.W156R	ENST00000261769	NM_004360.3	156	Tgg/Cgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	19	335	4	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827213	72827213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	36	492	0	ENST00000268489.5:c.9368C>A	p.Pro3123His	p.P3123H	ENST00000268489	NM_006885.3	3123	cCt/cAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827414	72827414	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs374608671		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	54	755	0	ENST00000268489.5:c.9167T>C	p.Ile3056Thr	p.I3056T	ENST00000268489	NM_006885.3	3056	aTt/aCt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953271	81953271	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	20	231	0	ENST00000359376.3:c.2235+2T>C		p.X745_splice	ENST00000359376	NM_002661.3	745																																																																																
FANCA	2175	MSKCC	GRCh37	16	89845372	89845372	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	42	581	0	ENST00000389301.3:c.1755del	p.Ala586ProfsTer19	p.A586Pfs*19	ENST00000389301	NM_000135.2	585	ccC/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	33	597	0	ENST00000269305.4:c.569del	p.Pro190LeufsTer57	p.P190Lfs*57	ENST00000269305	NM_001126112.2	190	cCt/ct																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15950396	15950396	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201721277		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	73	509	0	ENST00000268712.3:c.6548G>A	p.Arg2183His	p.R2183H	ENST00000268712	NM_006311.3	2183	cGc/cAc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15995345	15995345	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs367874483		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	21	419	0	ENST00000268712.3:c.2848A>G	p.Ile950Val	p.I950V	ENST00000268712	NM_006311.3	950	Att/Gtt																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	72	463	0	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
FLCN	201163	MSKCC	GRCh37	17	17129540	17129540	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	145	710	1	ENST00000285071.4:c.346del	p.Gln116SerfsTer14	p.Q116Sfs*14	ENST00000285071	NM_144997.5	116	Cag/ag																																																																															
STAT3	6774	MSKCC	GRCh37	17	40476850	40476850	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	39	483	1	ENST00000264657.5:c.1479del	p.Phe493LeufsTer16	p.F493Lfs*16	ENST00000264657	NM_139276.2	493	ttT/tt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63537572	63537572	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	267	398	0	ENST00000307078.5:c.1059+1G>A		p.X353_splice	ENST00000307078	NM_004655.3	353																																																																																
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1297203260		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	184	505	0	ENST00000245479.2:c.916del	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619172	1619172	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374199541		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	89	776	0	ENST00000344749.5:c.1388C>T	p.Ala463Val	p.A463V	ENST00000344749	NM_001136139.2	463	gCg/gTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2193700	2193700	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	38	621	1	ENST00000398665.3:c.506T>C	p.Val169Ala	p.V169A	ENST00000398665	NM_032482.2	169	gTc/gCc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222730	5222731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs766222935		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	52	586	3	ENST00000357368.4:c.3072dup	p.Val1025ArgfsTer34	p.V1025Rfs*34	ENST00000357368	NM_002850.3	1024	-/C																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296322	15296322	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772994625		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	117	698	2	ENST00000263388.2:c.2120G>A	p.Gly707Asp	p.G707D	ENST00000263388	NM_000435.2	707	gGc/gAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296373	15296373	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1381914938		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	41	832	0	ENST00000263388.2:c.2069C>A	p.Pro690Gln	p.P690Q	ENST00000263388	NM_000435.2	690	cCa/cAa																																																																															
UPF1	5976	MSKCC	GRCh37	19	18958551	18958551	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	48	519	1	ENST00000262803.5:c.372-2A>G		p.X124_splice	ENST00000262803	NM_002911.3	124																																																																																
UPF1	5976	MSKCC	GRCh37	19	18967091	18967092	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs1384543747		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	37	676	0	ENST00000262803.5:c.1814_1815del	p.Glu605AlafsTer17	p.E605Afs*17	ENST00000262803	NM_002911.3	602	gcAGag/gcag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	113	727	4	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211288	36211288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	55	865	0	ENST00000222270.7:c.1039G>A	p.Gly347Arg	p.G347R	ENST00000222270	NM_014727.1	347	Gga/Aga																																																																															
ERF	2077	MSKCC	GRCh37	19	42752804	42752804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1286494808		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	155	760	0	ENST00000222329.4:c.1460G>A	p.Arg487His	p.R487H	ENST00000222329	NM_006494.2	487	cGc/cAc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753594	42753594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1320701373		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	31	620	2	ENST00000222329.4:c.670C>T	p.Arg224Cys	p.R224C	ENST00000222329	NM_006494.2	224	Cgc/Tgc																																																																															
CIC	23152	MSKCC	GRCh37	19	42791355	42791355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	29	604	1	ENST00000575354.2:c.415C>T	p.Arg139Trp	p.R139W	ENST00000575354	NM_015125.3	139	Cgg/Tgg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965688	25965689	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	138	695	0	ENST00000435504.4:c.3517_3518del	p.Ser1173Ter	p.S1173*	ENST00000435504		1173	AGt/t																																																																															
SOS1	6654	MSKCC	GRCh37	2	39222519	39222520	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	30	502	0	ENST00000402219.2:c.3090dup	p.Tyr1031IlefsTer2	p.Y1031Ifs*2	ENST00000402219	NM_005633.3	1030	-/A																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010482	48010482	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	73	456	0	ENST00000234420.5:c.114del	p.Ala40ProfsTer41	p.A40Pfs*41	ENST00000234420	NM_000179.2	37	gCc/gc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	57	462	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99170887	99170887	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	102	601	0	ENST00000074304.5:c.1516A>G	p.Met506Val	p.M506V	ENST00000074304	NM_001134224.1	506	Atg/Gtg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99181152	99181152	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1303725216		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	47	586	0	ENST00000074304.5:c.2093A>G	p.His698Arg	p.H698R	ENST00000074304	NM_001134224.1	698	cAt/cGt																																																																															
CASP8	841	MSKCC	GRCh37	2	202149596	202149596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	100	488	0	ENST00000358485.4:c.1037G>A	p.Cys346Tyr	p.C346Y	ENST00000358485	NM_001080125.1	346	tGc/tAc																																																																															
INHA	3623	MSKCC	GRCh37	2	220439511	220439511	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs577636996		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	29	589	0	ENST00000243786.2:c.364C>T	p.Arg122Cys	p.R122C	ENST00000243786	NM_002191.3	122	Cgc/Tgc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793363	242793363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	44	803	0	ENST00000334409.5:c.714del	p.Val239CysfsTer39	p.V239Cfs*39	ENST00000334409	NM_005018.2	238	ccC/cc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206777	36206777	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	44	492	0	ENST00000300305.3:c.735del	p.Thr246ArgfsTer8	p.T246Rfs*8	ENST00000300305		245	ccC/cc																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656840	45656840	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	38	513	1	ENST00000407780.3:c.316del	p.Gln106ArgfsTer11	p.Q106Rfs*11	ENST00000407780	NM_001283052.1	106	Cag/ag																																																																															
EP300	2033	MSKCC	GRCh37	22	41573680	41573680	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	48	588	1	ENST00000263253.7:c.5965A>G	p.Met1989Val	p.M1989V	ENST00000263253	NM_001429.3	1989	Atg/Gtg																																																																															
EP300	2033	MSKCC	GRCh37	22	41574470	41574470	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	108	624	0	ENST00000263253.7:c.6755A>T	p.Glu2252Val	p.E2252V	ENST00000263253	NM_001429.3	2252	gAg/gTg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12475455	12475455	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	132	564	0	ENST00000287820.6:c.1329A>C	p.Gln443His	p.Q443H	ENST00000287820	NM_015869.4	443	caA/caC																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732957	30732957	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs727504421		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	30	256	0	ENST00000295754.5:c.1570G>A	p.Asp524Asn	p.D524N	ENST00000295754	NM_003242.5	524	Gac/Aac																																																																															
SETD2	29072	MSKCC	GRCh37	3	47084146	47084146	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	30	468	0	ENST00000409792.3:c.7143del	p.Ser2382LeufsTer29	p.S2382Lfs*29	ENST00000409792	NM_014159.6	2381	ccC/cc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	27	406	1	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936002	49936004	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	45	682	0	ENST00000296474.3:c.1666_1668del	p.Lys556del	p.K556del	ENST00000296474	NM_002447.2	556	AAG/-																																																																															
BAP1	8314	MSKCC	GRCh37	3	52443613	52443613	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	104	458	0	ENST00000460680.1:c.79del	p.Val27CysfsTer45	p.V27Cfs*45	ENST00000460680	NM_004656.3	27	Gtg/tg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021818	71021818	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs869025203		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	44	219	0	ENST00000318789.4:c.1540C>T	p.Arg514Cys	p.R514C	ENST00000318789	NM_032682.5	514	Cgt/Tgt																																																																															
RYBP	23429	MSKCC	GRCh37	3	72428542	72428544	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs768490904		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	61	417	0	ENST00000477973.2:c.458_460del	p.Gln154del	p.Q154del	ENST00000477973	NM_012234.5	154	CAA/-																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204873	128204873	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	36	800	1	ENST00000341105.2:c.568del	p.Ala190LeufsTer28	p.A190Lfs*28	ENST00000341105	NM_032638.4	190	Gct/ct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916644	178916644	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	38	311	0	ENST00000263967.3:c.31T>C	p.Trp11Arg	p.W11R	ENST00000263967	NM_006218.2	11	Tgg/Cgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916875	178916875	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	25	536	0	ENST00000263967.3:c.262C>T	p.Arg88Ter	p.R88*	ENST00000263967	NM_006218.2	88	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928039	178928039	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	25	434	0	ENST00000263967.3:c.1321del	p.Met441TrpfsTer3	p.M441Wfs*3	ENST00000263967	NM_006218.2	439	ggA/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	14	310	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430629	181430629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	28	530	0	ENST00000325404.1:c.481G>A	p.Ala161Thr	p.A161T	ENST00000325404	NM_003106.3	161	Gcg/Acg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535360	66535360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	57	583	1	ENST00000273854.3:c.101C>T	p.Ala34Val	p.A34V	ENST00000273854	NM_004439.5	34	gCa/gTa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143324184	143324185	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	42	237	0	ENST00000262992.4:c.278dup	p.Leu93PhefsTer9	p.L93Ffs*9	ENST00000262992	NM_001101669.1	93	ttg/ttTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187519145	187519145	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	26	355	0	ENST00000441802.2:c.12238G>T	p.Gly4080Ter	p.G4080*	ENST00000441802	NM_005245.3	4080	Gga/Tga																																																																															
TERT	7015	MSKCC	GRCh37	5	1293851	1293851	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	61	960	0	ENST00000310581.5:c.1150del	p.Gln384SerfsTer125	p.Q384Sfs*125	ENST00000310581	NM_198253.2	384	Cag/ag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515149	31515149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	134	774	1	ENST00000344624.3:c.1236G>A	p.Trp412Ter	p.W412*	ENST00000344624		412	tgG/tgA																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38949958	38949958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	22	378	0	ENST00000357387.3:c.3992C>T	p.Ala1331Val	p.A1331V	ENST00000357387	NM_152756.3	1331	gCt/gTt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38954947	38954947	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771642192		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	22	288	0	ENST00000357387.3:c.2626G>A	p.Val876Ile	p.V876I	ENST00000357387	NM_152756.3	876	Gtc/Atc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	80	377	5	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	217	513	9	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645084	86645084	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	57	335	0	ENST00000274376.6:c.1156T>C	p.Tyr386His	p.Y386H	ENST00000274376	NM_002890.2	386	Tat/Cat																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562876	176562876	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1268581071		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	121	411	0	ENST00000439151.2:c.772T>C	p.Phe258Leu	p.F258L	ENST00000439151	NM_022455.4	258	Ttt/Ctt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030307	180030308	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs772530628		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	111	734	0	ENST00000261937.6:c.3976dup	p.Ala1326GlyfsTer118	p.A1326Gfs*118	ENST00000261937	NM_182925.4	1326	gcc/gGcc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	121	620	8	ENST00000261937.6:c.89del	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31322267	31322267	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1478537435		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	12	225	0	ENST00000412585.2:c.1082C>T	p.Thr361Ile	p.T361I	ENST00000412585	NM_005514.6	361	aCa/aTa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168664	32168664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	57	541	0	ENST00000375023.3:c.4259C>T	p.Ala1420Val	p.A1420V	ENST00000375023	NM_004557.3	1420	gCc/gTc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553296	106553296	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	72	412	0	ENST00000369096.4:c.1261A>G	p.Asn421Asp	p.N421D	ENST00000369096	NM_001198.3	421	Aat/Gat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55229234	55229234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	41	337	0	ENST00000275493.2:c.1541G>A	p.Gly514Asp	p.G514D	ENST00000275493	NM_005228.3	514	gGc/gAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508508	106508508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	15	218	0	ENST00000359195.3:c.502G>A	p.Val168Met	p.V168M	ENST00000359195	NM_002649.2	168	Gtg/Atg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285495	38285495	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223331		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	148	657	0	ENST00000425967.3:c.658C>T	p.Arg220Cys	p.R220C	ENST00000425967	NM_001174067.1	220	Cgc/Tgc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739881	145739881	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764297840		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	134	700	0	ENST00000428558.2:c.1649C>T	p.Ala550Val	p.A550V	ENST00000428558	NM_004260.3	550	gCg/gTg																																																																															
ABL1	25	MSKCC	GRCh37	9	133738279	133738279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	23	469	0	ENST00000318560.5:c.679G>T	p.Gly227Cys	p.G227C	ENST00000318560	NM_005157.4	227	Ggt/Tgt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771719	135771720	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	122	624	0	ENST00000298552.3:c.3397dup	p.Leu1133ProfsTer26	p.L1133Pfs*26	ENST00000298552	NM_001162426.1	1133	ctg/cCtg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933593	39933594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	76	490	1	ENST00000378444.4:c.1005dup	p.Ser336LeufsTer45	p.S336Lfs*45	ENST00000378444	NM_001123385.1	335	-/C																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411518	63411518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	35	799	0	ENST00000330258.3:c.1649C>T	p.Pro550Leu	p.P550L	ENST00000330258	NM_152424.3	550	cCa/cTa																																																																															
MED12	9968	MSKCC	GRCh37	X	70339230	70339230	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	109	479	0	ENST00000374080.3:c.107T>C	p.Leu36Pro	p.L36P	ENST00000374080		36	cTg/cCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444808	49444809	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	38	731	0	ENST00000301067.7:c.2657dup	p.Gly887TrpfsTer16	p.G887Wfs*16	ENST00000301067	NM_003482.3	886	cct/ccCt																																																																															
AR	367	MSKCC	GRCh37	X	66766424	66766424	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	13	186	0	ENST00000374690.3:c.1440del	p.Tyr481ThrfsTer29	p.Y481Tfs*29	ENST00000374690	NM_000044.3	479	gCc/gc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs193920894		P-0037458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	85	454	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138407755	138407755	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	78	372	0	ENST00000289153.2:c.2098C>G	p.Arg700Gly	p.R700G	ENST00000289153	NM_006219.2	700	Cgg/Ggg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0037492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	69	492	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	59	364	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391214	89391214	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs530556931		P-0037492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	59	465	1	ENST00000336596.2:c.1280C>T	p.Ala427Val	p.A427V	ENST00000336596	NM_005233.5	427	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0037492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	219	655	0	ENST00000269305.4:c.838A>T	p.Arg280Ter	p.R280*	ENST00000269305	NM_001126112.2	280	Aga/Tga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65332814	65332817	+	frameshift_variant	Frame_Shift_Del	DEL	TTAT	TTAT	-			P-0037533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	168	438	0	ENST00000342505.4:c.722_725del	p.Asn241MetfsTer7	p.N241Mfs*7	ENST00000342505	NM_002227.2	241	aATAAt/at																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575080	48575080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	126	486	0	ENST00000342988.3:c.274C>T	p.His92Tyr	p.H92Y	ENST00000342988	NM_005359.5	92	Cat/Tat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0037533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	175	434	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0037533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	101	312	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628215	187628215	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	113	722	0	ENST00000441802.2:c.2767A>T	p.Asn923Tyr	p.N923Y	ENST00000441802	NM_005245.3	923	Aac/Tac																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001200	150001200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	115	668	0	ENST00000253339.5:c.2404G>A	p.Glu802Lys	p.E802K	ENST00000253339		802	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0037543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	450	350	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257158	16257158	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	58	489	0	ENST00000375759.3:c.4423C>T	p.Arg1475Ter	p.R1475*	ENST00000375759	NM_015001.2	1475	Cga/Tga																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94203791	94203819	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGCAGCAAACCAACATGTCTGAAGTGGAG	CGCAGCAAACCAACATGTCTGAAGTGGAG	-			P-0037543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	61	253	0	ENST00000323929.3:c.846-11_863del		p.X282_splice	ENST00000323929	NM_005591.3	282																																																																																
VEGFA	7422	MSKCC	GRCh37	6	43742126	43742126	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1193943585		P-0037579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	184	621	1	ENST00000523873.1:c.115G>A	p.Glu39Lys	p.E39K	ENST00000523873		39	Gaa/Aaa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66779628	66779628	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0037579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	107	514	0	ENST00000307102.5:c.958G>A	p.Glu320Lys	p.E320K	ENST00000307102	NM_002755.3	320	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68863700	68863701	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0037579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	80	302	0	ENST00000261769.5:c.2439+1dup		p.-813fs	ENST00000261769	NM_004360.3	813	-/G																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964361	70964361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	72	401	0	ENST00000276594.2:c.1667C>T	p.Ser556Leu	p.S556L	ENST00000276594	NM_024504.3	556	tCa/tTa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	92	444	3	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	83	503	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	76	437	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	45	285	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24143260	24143260	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	122	712	0	ENST00000263121.7:c.496del	p.Leu166PhefsTer10	p.L166Ffs*10	ENST00000263121	NM_003073.3	164	ttC/tt																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	59	273	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752800	57752800	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	57	375	3	ENST00000274289.3:c.1128del	p.Asp377ThrfsTer26	p.D377Tfs*26	ENST00000274289	NM_006622.3	376	aaA/aa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500625	99500625	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149470389		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	67	365	1	ENST00000268035.6:c.4058G>A	p.Arg1353His	p.R1353H	ENST00000268035	NM_000875.3	1353	cGc/cAc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	72	692	3	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	68	425	1	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	159	710	3	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	70	443	5	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	61	333	12	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905055	50905055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	81	510	5	ENST00000440232.2:c.342del	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	113	Ggg/gg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	27	144	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885939	111885939	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	73	513	1	ENST00000341259.2:c.1566del	p.Glu523SerfsTer25	p.E523Sfs*25	ENST00000341259	NM_005475.2	521	Ccc/cc																																																																															
TET1	80312	MSKCC	GRCh37	10	70333991	70333993	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-	rs903550402		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	40	195	0	ENST00000373644.4:c.1902_1904del	p.Val635del	p.V635del	ENST00000373644	NM_030625.2	632	tcTGTt/tct																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165569	47165569	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs78759480		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	108	483	0	ENST00000409792.3:c.557C>T	p.Pro186Leu	p.P186L	ENST00000409792	NM_014159.6	186	cCg/cTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	118	536	7	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031815	10031815	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs397518465		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	90	534	1	ENST00000330684.3:c.1007+1G>A		p.X336_splice	ENST00000330684	NM_001134407.1	336																																																																																
CHEK2	11200	MSKCC	GRCh37	22	29090060	29090060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121908706		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	48	208	0	ENST00000328354.6:c.1421G>A	p.Arg474His	p.R474H	ENST00000328354	NM_007194.3	474	cGt/cAt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2127694	2127694	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660733		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	89	512	0	ENST00000219476.3:c.2933G>A	p.Arg978His	p.R978H	ENST00000219476	NM_000548.3	978	cGc/cAc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324886	31324887	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs760037174		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	32	380	0	ENST00000412585.2:c.49_50insG	p.Leu17ArgfsTer82	p.L17Rfs*82	ENST00000412585	NM_005514.6	17	ctg/cGtg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99250839	99250839	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774734018		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	62	401	0	ENST00000268035.6:c.143G>A	p.Arg48His	p.R48H	ENST00000268035	NM_000875.3	48	cGc/cAc																																																																															
AXL	558	MSKCC	GRCh37	19	41762431	41762431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	95	486	1	ENST00000301178.4:c.2111G>A	p.Arg704His	p.R704H	ENST00000301178	NM_021913.4	704	cGc/cAc																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793676	89793677	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	50	246	0	ENST00000336032.3:c.752dup	p.Pro252AlafsTer3	p.P252Afs*3	ENST00000336032	NM_006813.2	249	gaa/gAaa																																																																															
CD276	80381	MSKCC	GRCh37	15	73994829	73994829	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751833994		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	40	306	1	ENST00000318443.5:c.313G>A	p.Ala105Thr	p.A105T	ENST00000318443	NM_001024736.1	105	Gca/Aca																																																																															
AR	367	MSKCC	GRCh37	X	66765350	66765350	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749864595		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	105	644	0	ENST00000374690.3:c.362C>T	p.Ser121Leu	p.S121L	ENST00000374690	NM_000044.3	121	tCg/tTg																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074168	8074169	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	70	315	1	ENST00000377482.5:c.490_491del	p.Leu164GlyfsTer2	p.L164Gfs*2	ENST00000377482	NM_018948.3	164	CTg/g																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925582	114925582	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	138	558	0	ENST00000543371.1:c.1663del	p.Ala555ProfsTer47	p.A555Pfs*47	ENST00000543371	NM_001198531.1	554	Ggg/gg																																																																															
ATM	472	MSKCC	GRCh37	11	108151869	108151869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	77	428	0	ENST00000278616.4:c.3550G>A	p.Gly1184Arg	p.G1184R	ENST00000278616	NM_000051.3	1184	Gga/Aga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434981	49434981	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs572145631		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	54	378	0	ENST00000301067.7:c.6572C>T	p.Thr2191Met	p.T2191M	ENST00000301067	NM_003482.3	2191	aCg/aTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133209301	133209302	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	121	616	0	ENST00000320574.5:c.6084_6085insA	p.Gly2029ArgfsTer30	p.G2029Rfs*30	ENST00000320574	NM_006231.2	2028	-/A																																																																															
RB1	5925	MSKCC	GRCh37	13	48937016	48937016	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs556201144		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	49	270	2	ENST00000267163.4:c.784C>T	p.Arg262Trp	p.R262W	ENST00000267163	NM_000321.2	262	Cgg/Tgg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396565	30396565	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	75	401	0	ENST00000331968.5:c.154C>A	p.His52Asn	p.H52N	ENST00000331968	NM_002742.2	52	Cat/Aat																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582827	95582827	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	56	302	0	ENST00000343455.3:c.1715T>A	p.Phe572Tyr	p.F572Y	ENST00000343455	NM_177438.2	572	tTt/tAt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81925161	81925161	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1384764686		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	94	499	0	ENST00000359376.3:c.952C>A	p.Leu318Met	p.L318M	ENST00000359376	NM_002661.3	318	Ctg/Atg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110189	8110189	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753106886		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	82	445	0	ENST00000585124.1:c.416G>A	p.Arg139His	p.R139H	ENST00000585124	NM_004217.3	139	cGt/cAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29576049	29576049	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	101	405	0	ENST00000358273.4:c.4022A>G	p.Gln1341Arg	p.Q1341R	ENST00000358273	NM_001042492.2	1341	cAg/cGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581325	48581325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	90	456	1	ENST00000342988.3:c.629G>A	p.Ser210Asn	p.S210N	ENST00000342988	NM_005359.5	210	aGc/aAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224199	36224199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775887663		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	113	647	0	ENST00000222270.7:c.6749G>A	p.Arg2250His	p.R2250H	ENST00000222270	NM_014727.1	2250	cGc/cAc																																																																															
CIC	23152	MSKCC	GRCh37	19	42796799	42796799	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	133	802	2	ENST00000575354.2:c.3261del	p.Gly1088GlufsTer5	p.G1088Efs*5	ENST00000575354	NM_015125.3	1086	gCc/gc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61721118	61721118	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	120	454	0	ENST00000401558.2:c.1156T>C	p.Phe386Leu	p.F386L	ENST00000401558	NM_003400.3	386	Ttc/Ctc																																																																															
CASP8	841	MSKCC	GRCh37	2	202149727	202149728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	108	579	0	ENST00000358485.4:c.1173dup	p.Ile392HisfsTer3	p.I392Hfs*3	ENST00000358485	NM_001080125.1	390	gcc/gCcc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212568866	212568866	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	86	416	0	ENST00000342788.4:c.1252del	p.Ser418LeufsTer4	p.S418Lfs*4	ENST00000342788	NM_005235.2	418	Tct/ct																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46255845	46255845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	78	351	0	ENST00000371998.3:c.457G>A	p.Val153Ile	p.V153I	ENST00000371998		153	Gtt/Att																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288173	21288173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	102	516	0	ENST00000354336.3:c.418G>A	p.Glu140Lys	p.E140K	ENST00000354336	NM_005207.3	140	Gaa/Aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521507	187521507	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	61	337	0	ENST00000441802.2:c.11648A>G	p.His3883Arg	p.H3883R	ENST00000441802	NM_005245.3	3883	cAt/cGt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131926963	131926963	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	31	136	1	ENST00000265335.6:c.1504del	p.Met502TrpfsTer3	p.M502Wfs*3	ENST00000265335		500	ttA/tt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323149	31323150	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	82	520	0	ENST00000412585.2:c.839_840del	p.Arg280IlefsTer8	p.R280Ifs*8	ENST00000412585	NM_005514.6	280	aGA/a																																																																															
ROS1	6098	MSKCC	GRCh37	6	117730804	117730804	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs140860347		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	116	441	0	ENST00000368508.3:c.230G>A	p.Arg77Gln	p.R77Q	ENST00000368508	NM_002944.2	77	cGg/cAg																																																																															
SMO	6608	MSKCC	GRCh37	7	128845457	128845457	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	153	676	0	ENST00000249373.3:c.754T>A	p.Phe252Ile	p.F252I	ENST00000249373	NM_005631.4	252	Ttc/Atc																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80646066	80646066	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	25	166	0	ENST00000286548.4:c.86T>C	p.Leu29Pro	p.L29P	ENST00000286548	NM_002072.3	29	cTc/cCc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239622	53239622	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	127	645	1	ENST00000375401.3:c.1720A>G	p.Asn574Asp	p.N574D	ENST00000375401	NM_004187.3	574	Aac/Gac																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412248	63412248	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	142	848	0	ENST00000330258.3:c.919del	p.Asp307ThrfsTer3	p.D307Tfs*3	ENST00000330258	NM_152424.3	307	Gac/ac																																																																															
STAG2	10735	MSKCC	GRCh37	X	123205129	123205129	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	117	522	0	ENST00000218089.9:c.2489T>C	p.Leu830Ser	p.L830S	ENST00000218089	NM_001042749.1	830	tTg/tCg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123229240	123229240	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs867285087		P-0037604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	84	216	1	ENST00000218089.9:c.3724C>T	p.Arg1242Ter	p.R1242*	ENST00000218089	NM_001042749.1	1242	Cga/Tga																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519966		P-0037604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	187	624	0	ENST00000347630.2:c.397T>A	p.Phe133Ile	p.F133I	ENST00000347630	NM_001007230.1	133	Ttc/Atc																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675074	40675074	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	161	664	0	ENST00000249776.8:c.38T>G	p.Phe13Cys	p.F13C	ENST00000249776	NM_033286.3	13	tTc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0037614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	78	541	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	52	409	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	136	325	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0037616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	232	473	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175606	112175606	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	112	235	0	ENST00000257430.4:c.4316del	p.Pro1439LeufsTer34	p.P1439Lfs*34	ENST00000257430	NM_000038.5	1439	Cct/ct																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849863	156849863	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747855434		P-0037616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	201	449	0	ENST00000524377.1:c.2119G>A	p.Glu707Lys	p.E707K	ENST00000524377	NM_002529.3	707	Gag/Aag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922695	44922695	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	203	220	0	ENST00000377967.4:c.1556G>C	p.Arg519Pro	p.R519P	ENST00000377967	NM_021140.2	519	cGa/cCa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046548	30046548	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	105	444	0	ENST00000331968.5:c.2635C>A	p.Gln879Lys	p.Q879K	ENST00000331968	NM_002742.2	879	Cag/Aag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119865	70119866	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GATG			P-0037616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	68	388	0	ENST00000245479.2:c.868_871dup	p.Val291GlyfsTer6	p.V291Gfs*6	ENST00000245479	NM_000346.3	289	-/GATG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0037694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	9	398	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0037694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	45	517	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0037694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	38	613	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0037694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	76	426	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411258	63411258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	15	748	0	ENST00000330258.3:c.1909G>A	p.Glu637Lys	p.E637K	ENST00000330258	NM_152424.3	637	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913382		P-0037754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	104	486	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	110	509	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0037754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	434	886	4	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111012	193111012	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	120	311	0	ENST00000367435.3:c.545T>A	p.Ile182Asn	p.I182N	ENST00000367435	NM_024529.4	182	aTt/aAt																																																																															
JUN	3725	MSKCC	GRCh37	1	59247793	59247794	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0037754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	209	912	0	ENST00000371222.2:c.949_950del	p.Asn317GlnfsTer30	p.N317Qfs*30	ENST00000371222	NM_002228.3	317	AAc/c																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400950	72400950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	80	438	0	ENST00000357731.5:c.221G>A	p.Arg74Gln	p.R74Q	ENST00000357731	NM_173808.2	74	cGg/cAg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554129	63554129	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	141	835	0	ENST00000307078.5:c.610G>T	p.Gly204Ter	p.G204*	ENST00000307078	NM_004655.3	204	Gga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530094	212530094	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	67	391	0	ENST00000342788.4:c.1825G>C	p.Asp609His	p.D609H	ENST00000342788	NM_005235.2	609	Gat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	37	577	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0037778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	111	370	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097719	27097719	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	169	674	0	ENST00000324856.7:c.3308T>C	p.Phe1103Ser	p.F1103S	ENST00000324856	NM_006015.4	1103	tTt/tCt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111461	8111492	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGTGCGAACTGTCAGACCACCACAACCACA	CCTGTGCGAACTGTCAGACCACCACAACCACA	-			P-0037778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	206	612	0	ENST00000346208.3:c.948_979del	p.Cys317LeufsTer24	p.C317Lfs*24	ENST00000346208		316	tCCTGTGCGAACTGTCAGACCACCACAACCACA/t																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346261	89346262	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0037778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	165	400	0	ENST00000301030.4:c.6688_6689del	p.Arg2230GlyfsTer29	p.R2230Gfs*29	ENST00000301030	NM_001256183.1	2230	AGg/g																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31386444	31386444	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	115	697	0	ENST00000328111.2:c.1669G>C	p.Glu557Gln	p.E557Q	ENST00000328111	NM_006892.3	557	Gaa/Caa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	72	240	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0037908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	86	321	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68855984	68855984	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121964877		P-0037908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	79	318	0	ENST00000261769.5:c.1792C>T	p.Arg598Ter	p.R598*	ENST00000261769	NM_004360.3	598	Cga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256000	16256000	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	89	351	0	ENST00000375759.3:c.3265G>T	p.Gly1089Ter	p.G1089*	ENST00000375759	NM_015001.2	1089	Gga/Tga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178143	56178143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1444422239		P-0037908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	84	208	0	ENST00000399503.3:c.3116C>T	p.Ser1039Leu	p.S1039L	ENST00000399503	NM_005921.1	1039	tCa/tTa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223654	53223654	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	116	483	0	ENST00000375401.3:c.3705G>C	p.Trp1235Cys	p.W1235C	ENST00000375401	NM_004187.3	1235	tgG/tgC																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112055	115112059	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAT	GCCAT	A			P-0037908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	94	451	0	ENST00000257566.3:c.1681_1685delinsT	p.Met561SerfsTer70	p.M561Sfs*70	ENST00000257566	NM_016569.3	561	ATGGCc/Tc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0037956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	387	544	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0037956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	387	848	2	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10270519	10270519	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0037956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	331	718	0	ENST00000340748.4:c.1121C>T	p.Ala374Val	p.A374V	ENST00000340748		374	gCg/gTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041229	29041229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	288	646	0	ENST00000282397.4:c.199G>A	p.Val67Met	p.V67M	ENST00000282397	NM_002019.4	67	Gtg/Atg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3656564	3656564	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	367	863	0	ENST00000294008.3:c.671T>G	p.Leu224Trp	p.L224W	ENST00000294008	NM_032444.2	224	tTg/tGg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056226	26056226	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1383675761		P-0037956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	301	633	0	ENST00000343677.2:c.431G>A	p.Gly144Asp	p.G144D	ENST00000343677	NM_005319.3	144	gGc/gAc																																																																															
AR	367	MSKCC	GRCh37	X	66765159	66765191	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	-	rs1343227414		P-0037960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	34	180	0	ENST00000374690.3:c.207_239del	p.Gln70_Gln80del	p.Q70_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86686687	86686689	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0037960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	73	399	0	ENST00000274376.6:c.3134_3136del	p.Asp1045del	p.D1045del	ENST00000274376	NM_002890.2	1044	aATGat/aat																																																																															
ATM	472	MSKCC	GRCh37	11	108216499	108216499	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	160	336	0	ENST00000278616.4:c.8448A>T	p.Lys2816Asn	p.K2816N	ENST00000278616	NM_000051.3	2816	aaA/aaT																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81960738	81960738	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0037960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	46	721	0	ENST00000359376.3:c.2469C>G	p.Tyr823Ter	p.Y823*	ENST00000359376	NM_002661.3	823	taC/taG																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26022253	26022253	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0037960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	346	578	0	ENST00000435504.4:c.403+1G>A		p.X135_splice	ENST00000435504		135																																																																																
ACVR1	90	MSKCC	GRCh37	2	158617424	158617424	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	92	631	0	ENST00000263640.3:c.1232T>G	p.Leu411Trp	p.L411W	ENST00000263640	NM_001105.4	411	tTg/tGg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212576870	212576870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	88	492	0	ENST00000342788.4:c.1029G>T	p.Met343Ile	p.M343I	ENST00000342788	NM_005235.2	343	atG/atT																																																																															
STAG2	10735	MSKCC	GRCh37	X	123179185	123179185	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	313	302	0	ENST00000218089.9:c.634G>T	p.Val212Phe	p.V212F	ENST00000218089	NM_001042749.1	212	Gtc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0039051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	269	721	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997744	149997798	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGCTAGACATCGCTGGTGCTGGCGTGCAGCTCTCCGCTCTAATGGCTTCAGTC	TGTGCTAGACATCGCTGGTGCTGGCGTGCAGCTCTCCGCTCTAATGGCTTCAGTC	-			P-0039051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	57	382	0	ENST00000253339.5:c.2669_2723del	p.Arg890IlefsTer49	p.R890Ifs*49	ENST00000253339		890	aGACTGAAGCCATTAGAGCGGAGAGCTGCACGCCAGCACCAGCGATGTCTAGCACAt/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	33	361	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0039173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	54	608	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553761	106553761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	73	379	4	ENST00000369096.4:c.1726G>A	p.Glu576Lys	p.E576K	ENST00000369096	NM_001198.3	576	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781288		P-0039173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	106	794	0	ENST00000269305.4:c.422G>T	p.Cys141Phe	p.C141F	ENST00000269305	NM_001126112.2	141	tGc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175436	+	frameshift_variant	Frame_Shift_Del	DEL	GAGACCCCACT	GAGACCCCACT	-			P-0039173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	45	296	0	ENST00000257430.4:c.4135_4145del	p.Glu1379HisfsTer3	p.E1379Hfs*3	ENST00000257430	NM_000038.5	1379	GAGACCCCACTc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0039467-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			52	248	506	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
RB1	5925	MSKCC	GRCh37	13	48951156	48951156	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060503078		P-0039467-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			132	56	300	0	ENST00000267163.4:c.1318G>A	p.Glu440Lys	p.E440K	ENST00000267163	NM_000321.2	440	Gaa/Aaa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857968	9857968	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779746293		P-0039467-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			150	53	521	0	ENST00000330684.3:c.3433G>A	p.Val1145Met	p.V1145M	ENST00000330684	NM_001134407.1	1145	Gtg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420871	49420871	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039467-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			208	224	552	1	ENST00000301067.7:c.14878C>T	p.Arg4960Ter	p.R4960*	ENST00000301067	NM_003482.3	4960	Cga/Tga																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390766	139390766	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039467-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			244	291	781	2	ENST00000277541.6:c.7425del	p.Val2476Ter	p.V2476*	ENST00000277541	NM_017617.3	2475	ccC/cc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44732806	44732807	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039467-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			98	274	491	0	ENST00000377967.4:c.10dup	p.Cys4LeufsTer17	p.C4Lfs*17	ENST00000377967	NM_021140.2	3	-/T																																																																															
RAF1	5894	MSKCC	GRCh37	3	12641653	12641653	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0039467-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			380	41	384	0	ENST00000251849.4:c.988A>T	p.Ile330Phe	p.I330F	ENST00000251849	NM_002880.3	330	Att/Ttt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112441	115112448	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCGACG	GGGCGACG	-			P-0039753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	147	601	0	ENST00000257566.3:c.1292_1299del	p.Ala431GlyfsTer5	p.A431Gfs*5	ENST00000257566	NM_016569.3	431	gCGTCGCCC/g																																																																															
POLE	5426	MSKCC	GRCh37	12	133263889	133263889	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	94	275	0	ENST00000320574.5:c.13A>T	p.Ser5Cys	p.S5C	ENST00000320574	NM_006231.2	5	Agc/Tgc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32950889	32950889	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0039753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	91	333	0	ENST00000380152.3:c.8715T>A	p.Tyr2905Ter	p.Y2905*	ENST00000380152		2905	taT/taA																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448386	56448387	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0039753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	104	791	0	ENST00000407977.2:c.259_260dup	p.Leu88ArgfsTer71	p.L88Rfs*71	ENST00000407977		87	ccg/ccCCg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66242762	66242762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	57	272	0	ENST00000273854.3:c.1810G>A	p.Gly604Arg	p.G604R	ENST00000273854	NM_004439.5	604	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0039784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	100	629	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099928	157099929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	58	360	0	ENST00000346085.5:c.865_866insA	p.Gly289GlufsTer246	p.G289Efs*246	ENST00000346085	NM_020732.3	289	ggg/gAgg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139438543	139438543	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	90	734	0	ENST00000277541.6:c.73T>C	p.Ser25Pro	p.S25P	ENST00000277541	NM_017617.3	25	Tcc/Ccc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	33	546	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577520	7577520	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1330865474		P-0039866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	42	765	0	ENST00000269305.4:c.761T>G	p.Ile254Ser	p.I254S	ENST00000269305	NM_001126112.2	254	aTc/aGc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028689	12028689	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0039898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	165	325	0	ENST00000353533.5:c.891+1G>C		p.X297_splice	ENST00000353533	NM_003010.3	297																																																																																
FAM58A	92002	MSKCC	GRCh37	X	152858168	152858168	+	synonymous_variant	Silent	SNP	G	G	A			P-0039898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	177	727	1	ENST00000406277.2:c.447C>T	p.Ser149=	p.S149=	ENST00000406277	NM_152274.4	149	tcC/tcT																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0039906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	92	529	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0039906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	22	400	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
KDR	3791	MSKCC	GRCh37	4	55955592	55955592	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs560674167		P-0039906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	47	394	2	ENST00000263923.4:c.3353G>A	p.Arg1118Gln	p.R1118Q	ENST00000263923	NM_002253.2	1118	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578473	7578473	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064795860		P-0039906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	154	720	1	ENST00000269305.4:c.457C>T	p.Pro153Ser	p.P153S	ENST00000269305	NM_001126112.2	153	Ccc/Tcc																																																																															
APC	324	MSKCC	GRCh37	5	112175799	112175799	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0039906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	20	230	0	ENST00000257430.4:c.4508C>G	p.Ser1503Ter	p.S1503*	ENST00000257430	NM_000038.5	1503	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0039944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	373	541	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	365	379	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0039944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	116	403	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0039944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	237	367	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858493	9858493	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765257420		P-0039944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	134	466	1	ENST00000330684.3:c.2908C>T	p.Arg970Trp	p.R970W	ENST00000330684	NM_001134407.1	970	Cgg/Tgg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	360001	360001	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs771361430		P-0039944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	156	583	0	ENST00000262320.3:c.1088A>G	p.Asn363Ser	p.N363S	ENST00000262320	NM_003502.3	363	aAt/aGt																																																																															
APC	324	MSKCC	GRCh37	5	112175641	112175641	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	100	306	0	ENST00000257430.4:c.4350del	p.Glu1451LysfsTer22	p.E1451Kfs*22	ENST00000257430	NM_000038.5	1450	cgA/cg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873545	151873545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	493	512	0	ENST00000262189.6:c.8993C>T	p.Ser2998Leu	p.S2998L	ENST00000262189	NM_170606.2	2998	tCa/tTa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98222017	98222017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	145	423	0	ENST00000331920.6:c.2752G>A	p.Ala918Thr	p.A918T	ENST00000331920	NM_000264.3	918	Gct/Act																																																																															
AR	367	MSKCC	GRCh37	X	66863193	66863193	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	58	260	0	ENST00000374690.3:c.1712A>C	p.His571Pro	p.H571P	ENST00000374690	NM_000044.3	571	cAc/cCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0040031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	28	384	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52443864	52443864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	52	778	1	ENST00000460680.1:c.31G>A	p.Asp11Asn	p.D11N	ENST00000460680	NM_004656.3	11	Gac/Aac																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375220	15375220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs913018426		P-0040031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	34	496	0	ENST00000263377.2:c.1207A>G	p.Ile403Val	p.I403V	ENST00000263377	NM_058243.2	403	Atc/Gtc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs121913468		P-0040083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	634	476	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993861	72993861	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756319969		P-0040083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	94	508	0	ENST00000268489.5:c.184G>A	p.Ala62Thr	p.A62T	ENST00000268489	NM_006885.3	62	Gcg/Acg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185195165	185195165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	49	306	0	ENST00000265026.3:c.2482G>A	p.Glu828Lys	p.E828K	ENST00000265026	NM_004721.4	828	Gaa/Aaa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170046	32170046	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768387019		P-0040083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1366	174	954	0	ENST00000375023.3:c.3562G>A	p.Asp1188Asn	p.D1188N	ENST00000375023	NM_004557.3	1188	Gat/Aat																																																																															
ATM	472	MSKCC	GRCh37	11	108202721	108202721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	70	315	0	ENST00000278616.4:c.7745G>T	p.Arg2582Ile	p.R2582I	ENST00000278616	NM_000051.3	2582	aGa/aTa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115484	8115846	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTAGACGGGGCTGTAATCTGGTAACTGTATGTATTTTAGTTCTTCAGTCCCTGGGAAGGAGACAGGAGAAGGTGGGAGGGAGGAAGGGGCCAGCTGAAATGGAAACAGATCCCTGATCCGGGGCGGTCAGTGGAACCCTTCTTGGTGTGCGAGAGCCTGTGCATTTCAGAGGCAGCAAAAAAGTAAAAAAAAAAAAAAAAAATTGATCTTTGTTTAGATTAACAGACCCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCA	ACTAGACGGGGCTGTAATCTGGTAACTGTATGTATTTTAGTTCTTCAGTCCCTGGGAAGGAGACAGGAGAAGGTGGGAGGGAGGAAGGGGCCAGCTGAAATGGAAACAGATCCCTGATCCGGGGCGGTCAGTGGAACCCTTCTTGGTGTGCGAGAGCCTGTGCATTTCAGAGGCAGCAAAAAAGTAAAAAAAAAAAAAAAAAATTGATCTTTGTTTAGATTAACAGACCCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCA	-			P-0040083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			13	147	25	1	ENST00000346208.3:c.1048-218_1192del		p.X350_splice	ENST00000346208		350																																																																																
CHEK1	1111	MSKCC	GRCh37	11	125514499	125514499	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	62	298	0	ENST00000428830.2:c.1194G>C	p.Glu398Asp	p.E398D	ENST00000428830	NM_001114121.2	398	gaG/gaC																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81990429	81990429	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	109	535	0	ENST00000359376.3:c.3700G>C	p.Glu1234Gln	p.E1234Q	ENST00000359376	NM_002661.3	1234	Gag/Cag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176639025	176639025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	130	610	0	ENST00000439151.2:c.3625C>T	p.Pro1209Ser	p.P1209S	ENST00000439151	NM_022455.4	1209	Cct/Tct																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169207	32169207	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139568674		P-0040083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	163	713	0	ENST00000375023.3:c.3826G>A	p.Glu1276Lys	p.E1276K	ENST00000375023	NM_004557.3	1276	Gag/Aag																																																																															
RAD21	5885	MSKCC	GRCh37	8	117868450	117868450	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148308569		P-0040083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	106	514	0	ENST00000297338.2:c.892C>T	p.Pro298Ser	p.P298S	ENST00000297338	NM_006265.2	298	Cca/Tca																																																																															
RAD21	5885	MSKCC	GRCh37	8	117870663	117870663	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	80	299	0	ENST00000297338.2:c.409C>T	p.Gln137Ter	p.Q137*	ENST00000297338	NM_006265.2	137	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0040155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	82	300	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913399		P-0040155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	105	282	0	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0040155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	197	401	0	ENST00000269305.4:c.783-1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44732912	44732912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	59	253	0	ENST00000377967.4:c.115C>T	p.Pro39Ser	p.P39S	ENST00000377967	NM_021140.2	39	Ccc/Tcc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161690	56161690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	70	369	0	ENST00000399503.3:c.1187G>A	p.Arg396His	p.R396H	ENST00000399503	NM_005921.1	396	cGt/cAt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222467	2222467	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs768713660		P-0040155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	218	575	0	ENST00000326181.6:c.661G>A	p.Asp221Asn	p.D221N	ENST00000326181	NM_032271.2	221	Gac/Aac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573531	48573531	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	38	274	0	ENST00000342988.3:c.115G>C	p.Ala39Pro	p.A39P	ENST00000342988	NM_005359.5	39	Gca/Cca																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277910	41277936	+	inframe_deletion	In_Frame_Del	DEL	AGGAAGCTGCAGAAGCTATTGAAGCTG	AGGAAGCTGCAGAAGCTATTGAAGCTG	-			P-0040155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	106	363	0	ENST00000349496.5:c.1877_1903del	p.Glu626_Glu634del	p.E626_E634del	ENST00000349496	NM_001904.3	625	aAGGAAGCTGCAGAAGCTATTGAAGCTGag/aag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651520	52651520	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	69	384	0	ENST00000394830.3:c.1576T>G	p.Leu526Val	p.L526V	ENST00000394830	NM_018313.4	526	Tta/Gta																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576519	67576519	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	56	257	0	ENST00000274335.5:c.798A>C	p.Glu266Asp	p.E266D	ENST00000274335		266	gaA/gaC																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683791	162683791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	36	273	0	ENST00000366898.1:c.178G>T	p.Asp60Tyr	p.D60Y	ENST00000366898	NM_004562.2	60	Gac/Tac																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87636245	87636245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	461	450	0	ENST00000277120.3:c.2410G>A	p.Gly804Arg	p.G804R	ENST00000277120		804	Ggg/Agg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0040287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	36	389	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	59	646	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9786967	9786967	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0040287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	21	446	0	ENST00000377346.4:c.2998G>T	p.Asp1000Tyr	p.D1000Y	ENST00000377346	NM_005026.3	1000	Gac/Tac																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984827	11984827	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	35	482	0	ENST00000353533.5:c.375del	p.Gln126LysfsTer2	p.Q126Kfs*2	ENST00000353533	NM_003010.3	125	Ggg/gg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0040347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	193	313	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
BLM	641	MSKCC	GRCh37	15	91290653	91290653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	26	253	0	ENST00000355112.3:c.31G>A	p.Glu11Lys	p.E11K	ENST00000355112	NM_000057.2	11	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258203	16258203	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763428386		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	231	271	0	ENST00000375759.3:c.5468G>A	p.Arg1823His	p.R1823H	ENST00000375759	NM_015001.2	1823	cGt/cAt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16264495	16264495	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	242	300	0	ENST00000375759.3:c.10698G>T	p.Arg3566Ser	p.R3566S	ENST00000375759	NM_015001.2	3566	agG/agT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	175	189	0	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099936	27099936	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773264329		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	253	344	1	ENST00000324856.7:c.3815C>T	p.Ala1272Val	p.A1272V	ENST00000324856	NM_006015.4	1272	gCg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	177	262	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	240	285	2	ENST00000262741.5:c.883del	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156836707	156836707	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	299	333	0	ENST00000524377.1:c.365T>C	p.Leu122Pro	p.L122P	ENST00000524377	NM_002529.3	122	cTc/cCc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	80	129	0	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136051	64136051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	214	279	0	ENST00000334205.4:c.1312G>A	p.Ala438Thr	p.A438T	ENST00000334205	NM_003942.2	438	Gca/Aca																																																																															
PAK1	5058	MSKCC	GRCh37	11	77043861	77043861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	261	307	0	ENST00000356341.3:c.1465A>G	p.Lys489Glu	p.K489E	ENST00000356341	NM_002576.4	489	Aag/Gag																																																																															
PGR	5241	MSKCC	GRCh37	11	100998688	100998688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	236	323	0	ENST00000325455.5:c.1114G>A	p.Asp372Asn	p.D372N	ENST00000325455	NM_001202474.3	372	Gac/Aac																																																																															
PGR	5241	MSKCC	GRCh37	11	100999603	100999603	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	263	364	0	ENST00000325455.5:c.199del	p.Gln67ArgfsTer99	p.Q67Rfs*99	ENST00000325455	NM_001202474.3	67	Cag/ag																																																																															
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	70	195	0	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427309	49427309	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs566069597		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	189	268	0	ENST00000301067.7:c.11179C>T	p.Arg3727Cys	p.R3727C	ENST00000301067	NM_003482.3	3727	Cgt/Tgt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111884755	111884755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772497470		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	218	262	0	ENST00000341259.2:c.844C>T	p.Arg282Trp	p.R282W	ENST00000341259	NM_005475.2	282	Cgg/Tgg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562552	21562552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	34	56	0	ENST00000382592.4:c.1367C>T	p.Thr456Met	p.T456M	ENST00000382592	NM_014572.2	456	aCg/aTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42054027	42054027	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1384151590		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	75	154	1	ENST00000219905.7:c.7489C>T	p.Arg2497Trp	p.R2497W	ENST00000219905	NM_001164273.1	2497	Cgg/Tgg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500606	99500606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs909142461		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	176	266	0	ENST00000268035.6:c.4039G>A	p.Ala1347Thr	p.A1347T	ENST00000268035	NM_000875.3	1347	Gcc/Acc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343595	343595	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	257	313	0	ENST00000262320.3:c.2079del	p.Thr694ProfsTer11	p.T694Pfs*11	ENST00000262320	NM_003502.3	693	ccC/cc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	160	200	0	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14020478	14020478	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377014538		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	129	191	0	ENST00000311895.7:c.449G>A	p.Arg150His	p.R150H	ENST00000311895	NM_005236.2	150	cGc/cAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348899	89348899	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	298	424	1	ENST00000301030.4:c.4051A>G	p.Arg1351Gly	p.R1351G	ENST00000301030	NM_001256183.1	1351	Aga/Gga																																																																															
FANCA	2175	MSKCC	GRCh37	16	89857933	89857933	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780135578		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	208	242	0	ENST00000389301.3:c.1237C>T	p.Arg413Cys	p.R413C	ENST00000389301	NM_000135.2	413	Cgt/Tgt																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	180	243	3	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
NF1	4763	MSKCC	GRCh37	17	29654820	29654820	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786203416		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	96	159	1	ENST00000358273.4:c.5572G>A	p.Ala1858Thr	p.A1858T	ENST00000358273	NM_001042492.2	1858	Gca/Aca																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs80357522		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	160	295	2	ENST00000357654.3:c.1961del	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	251	351	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448310	56448310	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	250	348	0	ENST00000407977.2:c.337C>T	p.Arg113Ter	p.R113*	ENST00000407977		113	Cga/Tga																																																																															
MALT1	10892	MSKCC	GRCh37	18	56339057	56339058	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	45	60	0	ENST00000348428.3:c.186dup	p.Ser63GlufsTer18	p.S63Efs*18	ENST00000348428	NM_006785.3	61	gcg/gcGg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10251481	10251482	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	228	312	2	ENST00000340748.4:c.3450dup	p.Leu1151ValfsTer12	p.L1151Vfs*12	ENST00000340748		1150	-/G																																																																															
JAK3	3718	MSKCC	GRCh37	19	17952243	17952243	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	218	314	0	ENST00000458235.1:c.1097del	p.Pro366ArgfsTer99	p.P366Rfs*99	ENST00000458235	NM_000215.3	366	cCg/cg																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793082	33793082	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	156	151	0	ENST00000498907.2:c.239A>G	p.Asp80Gly	p.D80G	ENST00000498907	NM_004364.3	80	gAc/gGc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219700	36219700	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	236	302	0	ENST00000222270.7:c.4601del	p.Pro1534HisfsTer112	p.P1534Hfs*112	ENST00000222270	NM_014727.1	1533	Ccc/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	268	392	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
CASP8	841	MSKCC	GRCh37	2	202131403	202131403	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	130	240	0	ENST00000358485.4:c.371T>C	p.Leu124Pro	p.L124P	ENST00000358485	NM_001080125.1	124	cTg/cCg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31394039	31394039	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	29	196	0	ENST00000328111.2:c.2326A>G	p.Thr776Ala	p.T776A	ENST00000328111	NM_006892.3	776	Acc/Gcc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279864	46279866	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-	rs578139784		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	99	198	4	ENST00000371998.3:c.3792_3794del	p.Gln1276del	p.Q1276del	ENST00000371998		1264	CAA/-																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72873690	72873690	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1217408412		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	35	180	0	ENST00000325599.8:c.612del	p.Phe204LeufsTer10	p.F204Lfs*10	ENST00000325599	NM_018130.2	204	ttT/tt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	67	175	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	222	319	2	ENST00000382895.3:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382895	NM_133330.2	1341	Ccc/cc																																																																															
TET2	54790	MSKCC	GRCh37	4	106197444	106197444	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1316795626		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	102	149	0	ENST00000380013.4:c.5777G>A	p.Arg1926His	p.R1926H	ENST00000380013	NM_001127208.2	1926	cGt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542414	187542414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	111	204	0	ENST00000441802.2:c.5326G>A	p.Glu1776Lys	p.E1776K	ENST00000441802	NM_005245.3	1776	Gaa/Aaa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	98	160	3	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970914	79970915	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1322666029		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	85	270	1	ENST00000265081.6:c.1148dup	p.Asn385GlnfsTer19	p.N385Qfs*19	ENST00000265081	NM_002439.4	380	-/A																																																																															
MSH3	4437	MSKCC	GRCh37	5	80160739	80160739	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	122	233	0	ENST00000265081.6:c.3108G>T	p.Glu1036Asp	p.E1036D	ENST00000265081	NM_002439.4	1036	gaG/gaT																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564679	86564680	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1425668686		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	201	307	0	ENST00000274376.6:c.416dup	p.Pro140SerfsTer18	p.P140Sfs*18	ENST00000274376	NM_002890.2	137	-/C																																																																															
APC	324	MSKCC	GRCh37	5	112137078	112137078	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	114	156	0	ENST00000257430.4:c.832C>T	p.Gln278Ter	p.Q278*	ENST00000257430	NM_000038.5	278	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	110	177	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944381	131944382	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs748536322		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	29	105	2	ENST00000265335.6:c.2801dup	p.Asn934LysfsTer10	p.N934Kfs*10	ENST00000265335		931	-/A																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056466	26056466	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs760631461		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	76	129	0	ENST00000343677.2:c.191A>G	p.Lys64Arg	p.K64R	ENST00000343677	NM_005319.3	64	aAa/aGa																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910346	29910346	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	206	351	0	ENST00000376809.5:c.19del	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000376809	NM_002116.7	6	Ccc/cc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910741	29910741	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs199474449		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	265	353	0	ENST00000376809.5:c.281A>G	p.Gln94Arg	p.Q94R	ENST00000376809	NM_002116.7	94	cAg/cGg																																																																															
STK19	8859	MSKCC	GRCh37	6	31940280	31940280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	239	291	0	ENST00000375331.2:c.422G>A	p.Gly141Asp	p.G141D	ENST00000375331	NM_004197.1	141	gGt/gAt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188297	32188297	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs753855314		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	249	353	2	ENST00000375023.3:c.1044del	p.Gly349AlafsTer49	p.G349Afs*49	ENST00000375023	NM_004557.3	348	ggC/gg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	268	342	0	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70982082	70982082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	196	244	0	ENST00000276594.2:c.14G>A	p.Arg5Gln	p.R5Q	ENST00000276594	NM_024504.3	5	cGg/cAg																																																																															
MYC	4609	MSKCC	GRCh37	8	128752893	128752893	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	95	254	0	ENST00000377970.2:c.1054A>G	p.Ser352Gly	p.S352G	ENST00000377970	NM_002467.4	352	Agc/Ggc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGG			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	168	406	0	ENST00000220592.5:c.1804_1806dup	p.Pro602dup	p.P602dup	ENST00000220592	NM_012154.3	602	-/CCC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0040367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	124	371	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40462655	40462655	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	29	319	0	ENST00000345506.4:c.2353C>G	p.Leu785Val	p.L785V	ENST00000345506	NM_003152.3	785	Ctt/Gtt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224351	36224351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	48	527	2	ENST00000222270.7:c.6901G>A	p.Asp2301Asn	p.D2301N	ENST00000222270	NM_014727.1	2301	Gat/Aat																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922657	44922689	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTTGACAGATGAGACCAACAGGAGTTGCACA	TTTTTGACAGATGAGACCAACAGGAGTTGCACA	-			P-0040367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	44	164	0	ENST00000377967.4:c.1528-10_1550del		p.X510_splice	ENST00000377967	NM_021140.2	510																																																																																
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	70	612	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578528	7578528	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	345	1024	0	ENST00000269305.4:c.402T>G	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	ttT/ttG																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929133	44929133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	199	674	1	ENST00000377967.4:c.2233G>A	p.Glu745Lys	p.E745K	ENST00000377967	NM_021140.2	745	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140507833	140507833	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	116	473	0	ENST00000288602.6:c.638A>G	p.Asp213Gly	p.D213G	ENST00000288602	NM_004333.4	213	gAt/gGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	41	418	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99172272	99172272	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs374507988		P-0040495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	48	509	0	ENST00000074304.5:c.1837+1G>A		p.X613_splice	ENST00000074304	NM_001134224.1	613																																																																																
TP53	7157	MSKCC	GRCh37	17	7579442	7579443	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0040495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	102	812	0	ENST00000269305.4:c.243_244dup	p.Pro82HisfsTer42	p.P82Hfs*42	ENST00000269305	NM_001126112.2	82	ccg/cACcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	244	438	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	446	753	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	131	515	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106238	27106238	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	410	700	0	ENST00000324856.7:c.5850del	p.Asn1951ThrfsTer5	p.N1951Tfs*5	ENST00000324856	NM_006015.4	1950	cGg/cg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740258	162740258	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	72	490	0	ENST00000367921.3:c.1460T>C	p.Leu487Pro	p.L487P	ENST00000367921	NM_006182.2	487	cTg/cCg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175729	176175729	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	194	853	0	ENST00000367669.3:c.386A>G	p.Asp129Gly	p.D129G	ENST00000367669	NM_022457.5	129	gAc/gGc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910797	32910797	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	230	426	1	ENST00000380152.3:c.2305C>A	p.Leu769Ile	p.L769I	ENST00000380152		769	Ctt/Att																																																																															
APC	324	MSKCC	GRCh37	5	112173383	112173383	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1060503279		P-0040572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	78	349	0	ENST00000257430.4:c.2092T>G	p.Leu698Val	p.L698V	ENST00000257430	NM_000038.5	698	Tta/Gta																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517484	176517484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754036845		P-0040611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	52	701	0	ENST00000292408.4:c.185G>A	p.Arg62His	p.R62H	ENST00000292408	NM_213647.1	62	cGt/cAt																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15838365	15838365	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	23	194	0	ENST00000307771.7:c.863A>G	p.Asn288Ser	p.N288S	ENST00000307771	NM_005089.3	288	aAc/aGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	108	388	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988489	36988489	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	56	551	0	ENST00000354822.5:c.164A>T	p.Lys55Met	p.K55M	ENST00000354822	NM_001079668.2	55	aAg/aTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218852	36218852	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs549211601		P-0040919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	197	672	3	ENST00000222270.7:c.4463G>A	p.Arg1488Gln	p.R1488Q	ENST00000222270	NM_014727.1	1488	cGg/cAg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198283292	198283292	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	150	496	0	ENST00000335508.6:c.436A>C	p.Lys146Gln	p.K146Q	ENST00000335508	NM_012433.2	146	Aaa/Caa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927405	178927405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	95	361	0	ENST00000263967.3:c.1168G>A	p.Asp390Asn	p.D390N	ENST00000263967	NM_006218.2	390	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112151195	112151215	+	frameshift_variant	Frame_Shift_Del	DEL	TCAACTACACGAATGGACCAT	TCAACTACACGAATGGACCAT	ACCAC			P-0040919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	71	383	1	ENST00000257430.4:c.838_858delinsACCAC	p.Ser280ThrfsTer8	p.S280Tfs*8	ENST00000257430	NM_000038.5	280	TCAACTACACGAATGGACCAT/ACCAC																																																																															
AR	367	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs137852578		P-0041059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	64	184	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																															
MED12	9968	MSKCC	GRCh37	X	70349274	70349274	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	190	348	0	ENST00000374080.3:c.3686T>C	p.Val1229Ala	p.V1229A	ENST00000374080		1229	gTa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0041164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	49	763	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468463	89468463	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	10	357	0	ENST00000336596.2:c.1997A>G	p.Asp666Gly	p.D666G	ENST00000336596	NM_005233.5	666	gAc/gGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921555	178921555	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	27	298	0	ENST00000263967.3:c.1037T>G	p.Val346Gly	p.V346G	ENST00000263967	NM_006218.2	346	gTa/gGa																																																																															
APC	324	MSKCC	GRCh37	5	112173340	112173340	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	18	301	0	ENST00000257430.4:c.2051del	p.Leu684CysfsTer34	p.L684Cfs*34	ENST00000257430	NM_000038.5	683	acT/ac																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413033	63413033	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1190709308		P-0041164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	24	930	0	ENST00000330258.3:c.134C>T	p.Ser45Phe	p.S45F	ENST00000330258	NM_152424.3	45	tCc/tTc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468158	50468158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	463	618	0	ENST00000331340.3:c.1393G>A	p.Glu465Lys	p.E465K	ENST00000331340	NM_006060.4	465	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747342068		P-0041255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	386	817	1	ENST00000269305.4:c.394A>G	p.Lys132Glu	p.K132E	ENST00000269305	NM_001126112.2	132	Aag/Gag																																																																															
JUN	3725	MSKCC	GRCh37	1	59247899	59247899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	54	747	0	ENST00000371222.2:c.844G>A	p.Glu282Lys	p.E282K	ENST00000371222	NM_002228.3	282	Gaa/Aaa																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125503056	125503056	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0041255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	65	233	0	ENST00000428830.2:c.425-2A>C		p.X142_splice	ENST00000428830	NM_001114121.2	142																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3786663	3786663	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	110	593	0	ENST00000262367.5:c.4548C>G	p.Ile1516Met	p.I1516M	ENST00000262367	NM_004380.2	1516	atC/atG																																																																															
FAT1	2195	MSKCC	GRCh37	4	187516915	187516915	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	93	508	0	ENST00000441802.2:c.13066T>C	p.Tyr4356His	p.Y4356H	ENST00000441802	NM_005245.3	4356	Tac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577586	7577586	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	17	643	0	ENST00000269305.4:c.695T>G	p.Ile232Ser	p.I232S	ENST00000269305	NM_001126112.2	232	aTc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs267605077		P-0041523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	412	857	0	ENST00000269305.4:c.400T>C	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	Ttt/Ctt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856439	111856439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	80	256	3	ENST00000341259.2:c.490G>A	p.Gly164Arg	p.G164R	ENST00000341259	NM_005475.2	164	Ggg/Agg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135787769	135787769	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs118203452		P-0041523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	142	581	1	ENST00000298552.3:c.813T>A	p.Tyr271Ter	p.Y271*	ENST00000298552	NM_001162426.1	271	taT/taA																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0041528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	56	363	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346338	73346338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	92	446	0	ENST00000377767.4:c.1462G>A	p.Asp488Asn	p.D488N	ENST00000377767	NM_014953.3	488	Gat/Aat																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25468912	25468912	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780672407		P-0041528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	164	744	0	ENST00000264709.3:c.1451G>A	p.Arg484Gln	p.R484Q	ENST00000264709	NM_175629.2	484	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577106	+	inframe_insertion	In_Frame_Ins	INS	-	-	GACAGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCAT			P-0041528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	76	761	0	ENST00000269305.4:c.832_833insATGGTAATCTACTGGGACGGAACAGCTTTGAGGTGCGTGTTTGTGCCTGTC	p.Cys277_Pro278insHisGlyAsnLeuLeuGlyArgAsnSerPheGluValArgValCysAlaCys	p.C277_P278insHGNLLGRNSFEVRVCAC	ENST00000269305	NM_001126112.2	278	cct/cATGGTAATCTACTGGGACGGAACAGCTTTGAGGTGCGTGTTTGTGCCTGTCct																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011106	12011106	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0041528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	69	293	0	ENST00000353533.5:c.514-1G>A		p.X172_splice	ENST00000353533	NM_003010.3	172																																																																																
AXIN2	8313	MSKCC	GRCh37	17	63554451	63554452	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0041528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	160	770	1	ENST00000307078.5:c.287_288delinsTT	p.Arg96Leu	p.R96L	ENST00000307078	NM_004655.3	96	cGA/cTT																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31424568	31424569	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0041528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	130	744	0	ENST00000344624.3:c.3225_3226dup	p.Glu1076AlafsTer42	p.E1076Afs*42	ENST00000344624		1076	gaa/gCGaa																																																																															
APC	324	MSKCC	GRCh37	5	112174774	112174774	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	71	360	0	ENST00000257430.4:c.3484del	p.Tyr1162IlefsTer3	p.Y1162Ifs*3	ENST00000257430	NM_000038.5	1161	aaT/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0041550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	48	502	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
IL10	3586	MSKCC	GRCh37	1	206945656	206945656	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767158016		P-0041550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	60	497	0	ENST00000423557.1:c.125G>A	p.Arg42Gln	p.R42Q	ENST00000423557	NM_000572.2	42	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0041626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	116	703	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68862207	68862207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0041626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	113	575	0	ENST00000261769.5:c.2295G>C	p.Gln765His	p.Q765H	ENST00000261769	NM_004360.3	765	caG/caC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0041678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	152	357	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100738	8100738	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	85	700	0	ENST00000346208.3:c.712A>T	p.Ser238Cys	p.S238C	ENST00000346208		238	Agc/Tgc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621148	1621148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	280	803	2	ENST00000344749.5:c.998G>A	p.Gly333Asp	p.G333D	ENST00000344749	NM_001136139.2	333	gGc/gAc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141566086	141566086	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	212	580	0	ENST00000220592.5:c.1178A>T	p.Tyr393Phe	p.Y393F	ENST00000220592	NM_012154.3	393	tAc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0041701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	168	423	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86659245	86659245	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	32	277	1	ENST00000274376.6:c.1534C>T	p.Arg512Ter	p.R512*	ENST00000274376	NM_002890.2	512	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	125	868	0	ENST00000267101.3:c.310G>C	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ctg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0041701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	58	415	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612752	228612752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	244	771	0	ENST00000366696.1:c.275C>T	p.Ala92Val	p.A92V	ENST00000366696	NM_003493.2	92	gCg/gTg																																																																															
ATM	472	MSKCC	GRCh37	11	108196191	108196191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	150	553	0	ENST00000278616.4:c.6727C>T	p.Gln2243Ter	p.Q2243*	ENST00000278616	NM_000051.3	2243	Caa/Taa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28610118	28610118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	132	614	0	ENST00000241453.7:c.1372C>T	p.Pro458Ser	p.P458S	ENST00000241453	NM_004119.2	458	Cca/Tca																																																																															
CUL3	8452	MSKCC	GRCh37	2	225365137	225365137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	63	486	0	ENST00000264414.4:c.1553C>T	p.Ala518Val	p.A518V	ENST00000264414	NM_003590.4	518	gCc/gTc																																																																															
FYN	2534	MSKCC	GRCh37	6	112020808	112020808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	73	412	0	ENST00000368678.4:c.763G>A	p.Gly255Arg	p.G255R	ENST00000368678		255	Gga/Aga																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139815601	139815601	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	130	783	0	ENST00000247668.2:c.1072A>T	p.Ile358Phe	p.I358F	ENST00000247668	NM_021138.3	358	Atc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0041871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	288	834	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0041871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	259	764	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0041871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	107	417	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112154935	112154935	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	203	656	0	ENST00000257430.4:c.1206del	p.Glu403LysfsTer51	p.E403Kfs*51	ENST00000257430	NM_000038.5	402	cgT/cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913528		P-0041871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	125	501	2	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs121913468		P-0041871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	197	537	1	ENST00000269571.5:c.2305G>A	p.Asp769Asn	p.D769N	ENST00000269571		769	Gac/Aac																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966652	36966652	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749999635		P-0041871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	190	535	0	ENST00000358127.4:c.674G>A	p.Arg225Gln	p.R225Q	ENST00000358127	NM_001280556.1	225	cGg/cAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280683	41280683	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	122	689	0	ENST00000349496.5:c.2199del	p.Met734Ter	p.M734*	ENST00000349496	NM_001904.3	732	gaC/ga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779210	3779211	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs797045497		P-0041885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	17	458	0	ENST00000262367.5:c.5837dup	p.Pro1947ThrfsTer19	p.P1947Tfs*19	ENST00000262367	NM_004380.2	1946	cca/ccCa																																																																															
RB1	5925	MSKCC	GRCh37	13	49033867	49033867	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	22	473	0	ENST00000267163.4:c.2005del	p.Leu669PhefsTer8	p.L669Ffs*8	ENST00000267163	NM_000321.2	668	cgC/cg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343603	343603	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	126	920	0	ENST00000262320.3:c.2071del	p.Gln691LysfsTer14	p.Q691Kfs*14	ENST00000262320	NM_003502.3	691	Caa/aa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	364542	364542	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0041885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	41	849	0	ENST00000262320.3:c.1019+1G>A		p.X340_splice	ENST00000262320	NM_003502.3	340																																																																																
NF1	4763	MSKCC	GRCh37	17	29587413	29587414	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0041885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	161	423	0	ENST00000358273.4:c.4457_4458insA	p.Cys1486Ter	p.C1486*	ENST00000358273	NM_001042492.2	1486	tgt/tgAt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028670	12028670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	128	405	0	ENST00000353533.5:c.873G>T	p.Trp291Cys	p.W291C	ENST00000353533	NM_003010.3	291	tgG/tgT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121913284		P-0041953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	114	274	0	ENST00000263967.3:c.1035T>G	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaG																																																																															
APC	324	MSKCC	GRCh37	5	112175987	112175987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	112	241	0	ENST00000257430.4:c.4696G>A	p.Asp1566Asn	p.D1566N	ENST00000257430	NM_000038.5	1566	Gat/Aat																																																																															
NF1	4763	MSKCC	GRCh37	17	29557936	29557936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	35	178	0	ENST00000358273.4:c.3190C>A	p.Leu1064Ile	p.L1064I	ENST00000358273	NM_001042492.2	1064	Ctt/Att																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0041959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	149	277	1	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0041959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	134	458	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0041959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	481	930	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913255		P-0041959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	336	617	0	ENST00000369535.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584696	187584696	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144526682		P-0041959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	242	574	0	ENST00000441802.2:c.3337G>A	p.Asp1113Asn	p.D1113N	ENST00000441802	NM_005245.3	1113	Gat/Aat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431178	49431178	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs793888512		P-0041959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	332	770	0	ENST00000301067.7:c.9961C>T	p.Arg3321Ter	p.R3321*	ENST00000301067	NM_003482.3	3321	Cga/Tga																																																																															
INSR	3643	MSKCC	GRCh37	19	7122706	7122706	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	183	768	0	ENST00000302850.5:c.3448C>G	p.Leu1150Val	p.L1150V	ENST00000302850	NM_000208.2	1150	Ctg/Gtg																																																																															
EP300	2033	MSKCC	GRCh37	22	41574749	41574749	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1260684837		P-0041959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	174	876	0	ENST00000263253.7:c.7034G>C	p.Ser2345Thr	p.S2345T	ENST00000263253	NM_001429.3	2345	aGt/aCt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258976	153258976	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	154	210	0	ENST00000281708.4:c.839T>C	p.Phe280Ser	p.F280S	ENST00000281708	NM_033632.3	280	tTc/tCc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460572	149460572	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	332	664	0	ENST00000286301.3:c.65T>G	p.Val22Gly	p.V22G	ENST00000286301	NM_005211.3	22	gTg/gGg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151960179	151960179	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	203	358	0	ENST00000262189.6:c.1221T>A	p.Asp407Glu	p.D407E	ENST00000262189	NM_170606.2	407	gaT/gaA																																																																															
PREX2	80243	MSKCC	GRCh37	8	69103971	69103971	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	302	600	0	ENST00000288368.4:c.4361A>G	p.Asp1454Gly	p.D1454G	ENST00000288368	NM_024870.2	1454	gAc/gGc																																																																															
RARA	5914	MSKCC	GRCh37	17	38512473	38512473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	123	701	1	ENST00000254066.5:c.1384C>T	p.Pro462Ser	p.P462S	ENST00000254066	NM_000964.3	462	Ccg/Tcg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249501	153249501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1316840275		P-0041974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	102	364	0	ENST00000281708.4:c.1277C>T	p.Ser426Leu	p.S426L	ENST00000281708	NM_033632.3	426	tCa/tTa																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855493	45855493	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913026		P-0041974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	140	781	0	ENST00000391945.4:c.2164C>T	p.Arg722Trp	p.R722W	ENST00000391945	NM_000400.3	722	Cgg/Tgg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26967555	26967555	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	162	309	0	ENST00000381527.3:c.698T>A	p.Ile233Lys	p.I233K	ENST00000381527	NM_001260.1	233	aTa/aAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579386	7579400	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	TCTGGGAAGGGACAG	TCTGGGAAGGGACAG	-			P-0041974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	314	729	0	ENST00000269305.4:c.287_301del	p.Ser96_Lys101delinsTer	p.S96_K101delins*	ENST00000269305	NM_001126112.2	96	tCTGTCCCTTCCCAGAaa/taa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56402540	56402540	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	43	122	0	ENST00000348428.3:c.1582T>G	p.Leu528Val	p.L528V	ENST00000348428	NM_006785.3	528	Tta/Gta																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027087	71027094	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGGGCG	GGGGGGCG	-			P-0041974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	160	479	0	ENST00000318789.4:c.1233_1240del	p.Ala412AspfsTer46	p.A412Dfs*46	ENST00000318789	NM_032682.5	411	acCGCCCCCCtg/actg																																																																															
APC	324	MSKCC	GRCh37	5	112151196	112151196	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs137854569		P-0041974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	95	271	0	ENST00000257430.4:c.839C>G	p.Ser280Ter	p.S280*	ENST00000257430	NM_000038.5	280	tCa/tGa																																																																															
APC	324	MSKCC	GRCh37	5	112175755	112175759	+	frameshift_variant	Frame_Shift_Del	DEL	ATTAC	ATTAC	-			P-0041974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	29	231	0	ENST00000257430.4:c.4467_4471del	p.Leu1489PhefsTer23	p.L1489Ffs*23	ENST00000257430	NM_000038.5	1488	ttATTACat/ttat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	171	244	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0041980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	417	640	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
MITF	4286	MSKCC	GRCh37	3	69928358	69928358	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774545277		P-0041980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	25	324	0	ENST00000352241.4:c.178C>T	p.Arg60Cys	p.R60C	ENST00000352241	NM_198159.2	60	Cgc/Tgc																																																																															
ATRX	546	MSKCC	GRCh37	X	76944369	76944369	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs398123425		P-0041980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	214	172	0	ENST00000373344.5:c.536A>G	p.Asn179Ser	p.N179S	ENST00000373344	NM_000489.3	179	aAt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0042175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	169	920	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0042175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	43	551	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	17	323	0	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001422	29001422	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752383804		P-0042175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	213	482	1	ENST00000282397.4:c.1310C>T	p.Ser437Leu	p.S437L	ENST00000282397	NM_002019.4	437	tCg/tTg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066846	30066846	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758982696		P-0042175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	26	752	2	ENST00000331968.5:c.2285G>A	p.Arg762His	p.R762H	ENST00000331968	NM_002742.2	762	cGc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781413	3781413	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	79	770	0	ENST00000262367.5:c.4952A>T	p.Asp1651Val	p.D1651V	ENST00000262367	NM_004380.2	1651	gAc/gTc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0042258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	150	556	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0042258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	85	231	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151878176	151878176	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	239	514	0	ENST00000262189.6:c.6769C>T	p.Arg2257Ter	p.R2257*	ENST00000262189	NM_170606.2	2257	Cga/Tga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16042392	16042393	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	102	379	0	ENST00000268712.3:c.1281dup	p.Met428TyrfsTer5	p.M428Yfs*5	ENST00000268712	NM_006311.3	427	-/T																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0042317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	65	433	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508257	106508257	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766854286		P-0042317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	56	516	0	ENST00000359195.3:c.251C>T	p.Ala84Val	p.A84V	ENST00000359195	NM_002649.2	84	gCg/gTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42052725	42052725	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0042317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	94	385	0	ENST00000219905.7:c.7396C>T	p.Arg2466Ter	p.R2466*	ENST00000219905	NM_001164273.1	2466	Cga/Tga																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793146	33793146	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1210600080		P-0042317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	44	367	1	ENST00000498907.2:c.175G>T	p.Glu59Ter	p.E59*	ENST00000498907	NM_004364.3	59	Gag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041151	47041152	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0042317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	179	750	1	ENST00000329236.7:c.1347_1348del	p.Thr450HisfsTer10	p.T450Hfs*10	ENST00000329236	NM_001204466.1	449	TAt/t																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0042341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	78	311	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56376762	56376762	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	91	372	0	ENST00000348428.3:c.802A>G	p.Thr268Ala	p.T268A	ENST00000348428	NM_006785.3	268	Aca/Gca																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0042372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	103	460	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0042372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	433	672	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121913338		P-0042372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	242	390	0	ENST00000288602.6:c.1781A>C	p.Asp594Ala	p.D594A	ENST00000288602	NM_004333.4	594	gAt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	143	275	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138135	2138135	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201206500		P-0042372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	430	702	0	ENST00000219476.3:c.5155G>A	p.Ala1719Thr	p.A1719T	ENST00000219476	NM_000548.3	1719	Gca/Aca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770576	40770576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	273	504	2	ENST00000373198.4:c.2806C>T	p.Arg936Ter	p.R936*	ENST00000373198	NM_133170.3	936	Cga/Tga																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18491376	18491376	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	58	303	0	ENST00000266497.5:c.1289T>A	p.Ile430Asn	p.I430N	ENST00000266497		430	aTt/aAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0042583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	145	669	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	206	682	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	63	386	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	75	337	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	52	308	0	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	158	621	2	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
ATR	545	MSKCC	GRCh37	3	142261554	142261555	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1043355995		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	72	317	0	ENST00000350721.4:c.3402dup	p.Asn1135Ter	p.N1135*	ENST00000350721	NM_001184.3	1134	-/T																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	170	556	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	222	1000	7	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	190	766	9	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741760	145741760	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759352592		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	209	825	0	ENST00000428558.2:c.743G>A	p.Arg248His	p.R248H	ENST00000428558	NM_004260.3	248	cGt/cAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349641	89349641	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1064796815		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	224	841	6	ENST00000301030.4:c.3309del	p.Asp1104MetfsTer214	p.D1104Mfs*214	ENST00000301030	NM_001256183.1	1103	aaA/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	269	474	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	174	582	5	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
BARD1	580	MSKCC	GRCh37	2	215593651	215593651	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111367604		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	73	367	0	ENST00000260947.4:c.2083G>A	p.Val695Ile	p.V695I	ENST00000260947	NM_000465.2	695	Gtc/Atc																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	121	548	7	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15378244	15378244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	109	458	1	ENST00000263377.2:c.542G>A	p.Arg181His	p.R181H	ENST00000263377	NM_058243.2	181	cGt/cAt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52712520	52712520	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	64	511	0	ENST00000394830.3:c.232C>T	p.Arg78Ter	p.R78*	ENST00000394830	NM_018313.4	78	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	192	714	0	ENST00000269305.4:c.569del	p.Pro190LeufsTer57	p.P190Lfs*57	ENST00000269305	NM_001126112.2	190	cCt/ct																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98247991	98247991	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138034434		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	122	427	2	ENST00000331920.6:c.560G>A	p.Arg187His	p.R187H	ENST00000331920	NM_000264.3	187	cGt/cAt																																																																															
B2M	567	MSKCC	GRCh37	15	45003767	45003767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	135	541	0	ENST00000558401.1:c.23C>A	p.Ala8Asp	p.A8D	ENST00000558401	NM_004048.2	8	gCt/gAt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678541	88678541	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145157285		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	120	500	1	ENST00000360948.2:c.995C>T	p.Thr332Met	p.T332M	ENST00000360948	NM_001012338.2	332	aCg/aTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356423	66356423	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	75	315	1	ENST00000273854.3:c.1074del	p.Ser359LeufsTer63	p.S359Lfs*63	ENST00000273854	NM_004439.5	358	ccC/cc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46211461	46211461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	10	203	0	ENST00000334344.6:c.427C>T	p.Arg143Cys	p.R143C	ENST00000334344	NM_152641.2	143	Cgt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108235935	108235935	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs770641163		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	81	426	0	ENST00000278616.4:c.8977C>T	p.Arg2993Ter	p.R2993*	ENST00000278616	NM_000051.3	2993	Cga/Tga																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001091	150001091	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753995655		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	71	450	1	ENST00000253339.5:c.2513G>A	p.Arg838His	p.R838H	ENST00000253339		838	cGt/cAt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17948796	17948796	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201972084		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	231	847	1	ENST00000458235.1:c.1646G>A	p.Arg549Gln	p.R549Q	ENST00000458235	NM_000215.3	549	cGa/cAa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	133	646	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351595	89351595	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	213	873	2	ENST00000301030.4:c.1355del	p.Asn452IlefsTer3	p.N452Ifs*3	ENST00000301030	NM_001256183.1	452	aAt/at																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390732	139390732	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	296	991	0	ENST00000277541.6:c.7459C>T	p.Gln2487Ter	p.Q2487*	ENST00000277541	NM_017617.3	2487	Cag/Tag																																																																															
PAX5	5079	MSKCC	GRCh37	9	36840564	36840564	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771002648		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	252	971	2	ENST00000358127.4:c.1169G>A	p.Arg390His	p.R390H	ENST00000358127	NM_001280556.1	390	cGt/cAt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165309	32165309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	287	992	0	ENST00000375023.3:c.4819G>T	p.Gly1607Trp	p.G1607W	ENST00000375023	NM_004557.3	1607	Ggg/Tgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610306	10610306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	312	998	0	ENST00000171111.5:c.404G>A	p.Arg135His	p.R135H	ENST00000171111	NM_203500.1	135	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224111	36224111	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	204	676	0	ENST00000222270.7:c.6666del	p.Thr2223ProfsTer38	p.T2223Pfs*38	ENST00000222270	NM_014727.1	2221	Ccc/cc																																																																															
ETV6	2120	MSKCC	GRCh37	12	11905505	11905505	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774396176		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	68	304	2	ENST00000396373.4:c.155C>T	p.Ala52Val	p.A52V	ENST00000396373	NM_001987.4	52	gCg/gTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732985	30732985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	119	464	0	ENST00000359013.4:c.1673G>A	p.Cys558Tyr	p.C558Y	ENST00000359013	NM_001024847.2	558	tGt/tAt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508860	106508860	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1251220989		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	160	617	3	ENST00000359195.3:c.854C>T	p.Thr285Met	p.T285M	ENST00000359195	NM_002649.2	285	aCg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874709	151874709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139770288		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	135	457	1	ENST00000262189.6:c.7829G>A	p.Arg2610Gln	p.R2610Q	ENST00000262189	NM_170606.2	2610	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882000		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	275	853	0	ENST00000269305.4:c.475G>A	p.Ala159Thr	p.A159T	ENST00000269305	NM_001126112.2	159	Gcc/Acc																																																																															
CDH1	999	MSKCC	GRCh37	16	68855967	68855967	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	34	597	1	ENST00000261769.5:c.1779del	p.Ile594TyrfsTer19	p.I594Yfs*19	ENST00000261769	NM_004360.3	592	gCc/gc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250136	110250136	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	142	560	0	ENST00000374672.4:c.539del	p.Pro180LeufsTer14	p.P180Lfs*14	ENST00000374672	NM_004235.4	180	cCt/ct																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883773	37883774	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs766671083		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	65	887	0	ENST00000269571.5:c.3391dup	p.Leu1131ProfsTer8	p.L1131Pfs*8	ENST00000269571		1129	gcc/gCcc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79968139	79968142	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-	rs763478027		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	102	633	0	ENST00000265081.6:c.873_876del	p.Val292MetfsTer15	p.V292Mfs*15	ENST00000265081	NM_002439.4	290	cTGTTt/ct																																																																															
APC	324	MSKCC	GRCh37	5	112173848	112173849	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	87	393	0	ENST00000257430.4:c.2563_2564del	p.Glu855ThrfsTer56	p.E855Tfs*56	ENST00000257430	NM_000038.5	853	GAg/g																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633486	3633486	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs181782315		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	229	941	0	ENST00000294008.3:c.4765C>T	p.Arg1589Cys	p.R1589C	ENST00000294008	NM_032444.2	1589	Cgc/Tgc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412248	63412248	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	209	515	1	ENST00000330258.3:c.919del	p.Asp307ThrfsTer3	p.D307Tfs*3	ENST00000330258	NM_152424.3	307	Gac/ac																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244038	5244038	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771439798		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	251	794	0	ENST00000357368.4:c.1444G>A	p.Asp482Asn	p.D482N	ENST00000357368	NM_002850.3	482	Gac/Aac																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17387420	17387420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757371052		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	253	843	0	ENST00000359435.4:c.686C>T	p.Thr229Met	p.T229M	ENST00000359435	NM_001033549.1	229	aCg/aTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123778	11123778	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060502056		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	179	609	1	ENST00000344626.4:c.2428G>A	p.Val810Met	p.V810M	ENST00000344626	NM_003072.3	810	Gtg/Atg																																																																															
MPL	4352	MSKCC	GRCh37	1	43812270	43812270	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	169	634	0	ENST00000372470.3:c.1135C>A	p.Leu379Met	p.L379M	ENST00000372470	NM_005373.2	379	Ctg/Atg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88681435	88681435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	161	679	0	ENST00000372037.3:c.1325G>A	p.Arg442His	p.R442H	ENST00000372037	NM_004329.2	442	cGt/cAt																																																																															
PAK1	5058	MSKCC	GRCh37	11	77066749	77066749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	99	412	0	ENST00000356341.3:c.736C>T	p.Pro246Ser	p.P246S	ENST00000356341	NM_002576.4	246	Cct/Tct																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008202	29008202	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	70	354	0	ENST00000282397.4:c.669T>A	p.His223Gln	p.H223Q	ENST00000282397	NM_002019.4	223	caT/caA																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396549	30396549	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	143	499	0	ENST00000331968.5:c.170T>C	p.Leu57Pro	p.L57P	ENST00000331968	NM_002742.2	57	cTg/cCg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	341226	341226	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1290523788		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	269	943	0	ENST00000262320.3:c.2258T>C	p.Val753Ala	p.V753A	ENST00000262320	NM_003502.3	753	gTa/gCa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223188	2223188	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373051088		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	221	737	1	ENST00000326181.6:c.800C>T	p.Thr267Met	p.T267M	ENST00000326181	NM_032271.2	267	aCg/aTg																																																																															
SRC	6714	MSKCC	GRCh37	20	36026160	36026160	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	207	937	1	ENST00000358208.4:c.762G>T	p.Gln254His	p.Q254H	ENST00000358208		254	caG/caT																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940765	49940765	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs540212347		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	179	688	0	ENST00000296474.3:c.278C>T	p.Thr93Met	p.T93M	ENST00000296474	NM_002447.2	93	aCg/aTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627780	187627780	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767098741		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	163	592	0	ENST00000441802.2:c.3202G>A	p.Glu1068Lys	p.E1068K	ENST00000441802	NM_005245.3	1068	Gag/Aag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956595	93956595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	73	362	0	ENST00000369303.4:c.2641C>T	p.Pro881Ser	p.P881S	ENST00000369303	NM_004440.3	881	Cca/Tca																																																																															
SMO	6608	MSKCC	GRCh37	7	128843323	128843323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	256	890	0	ENST00000249373.3:c.430C>T	p.Arg144Cys	p.R144C	ENST00000249373	NM_005631.4	144	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0042666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	578	558	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0042666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	171	613	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21974795	21974795	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	57	187	0	ENST00000304494.5:c.32del	p.Pro11LeufsTer15	p.P11Lfs*15	ENST00000304494	NM_000077.4	11	cCt/ct																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106515241	106515241	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143259740		P-0042680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	33	328	0	ENST00000359195.3:c.2384C>T	p.Ala795Val	p.A795V	ENST00000359195	NM_002649.2	795	gCg/gTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55984913	55984913	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	149	489	0	ENST00000263923.4:c.216A>T	p.Gln72His	p.Q72H	ENST00000263923	NM_002253.2	72	caA/caT																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914592	32914592	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1799954		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	111	387	0	ENST00000380152.3:c.6100C>T	p.Arg2034Cys	p.R2034C	ENST00000380152		2034	Cgt/Tgt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	116	387	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	90	268	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15308383	15308383	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	153	499	1	ENST00000263388.2:c.125del	p.Pro42LeufsTer194	p.P42Lfs*194	ENST00000263388	NM_000435.2	42	cCt/ct																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460354	149460354	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1437040009		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	142	415	1	ENST00000286301.3:c.283G>A	p.Ala95Thr	p.A95T	ENST00000286301	NM_005211.3	95	Gcc/Acc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	353	490	0	ENST00000407977.2:c.349del	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	212	375	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	149	456	0	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	145	407	0	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																																																															
CIC	23152	MSKCC	GRCh37	19	42796882	42796883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761345552		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	169	597	1	ENST00000575354.2:c.3347dup	p.Ser1117LysfsTer34	p.S1117Kfs*34	ENST00000575354	NM_015125.3	1114	gcc/gCcc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	152	435	0	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715678	30715678	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886039551		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	109	256	0	ENST00000359013.4:c.1411G>A	p.Asp471Asn	p.D471N	ENST00000359013	NM_001024847.2	471	Gat/Aat																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178635	32178635	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs761063325		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	62	606	2	ENST00000375023.3:c.2759del	p.Pro920LeufsTer12	p.P920Lfs*12	ENST00000375023	NM_004557.3	920	cCt/ct																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166010	118166010	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767827215		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	110	411	0	ENST00000369448.3:c.520C>T	p.Arg174Trp	p.R174W	ENST00000369448	NM_017709.3	174	Cgg/Tgg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128044408	128044408	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373790042		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	155	541	1	ENST00000285398.2:c.1213G>A	p.Val405Ile	p.V405I	ENST00000285398	NM_000122.1	405	Gtt/Att																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149439282	149439282	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766586864		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	128	415	0	ENST00000286301.3:c.2113G>A	p.Glu705Lys	p.E705K	ENST00000286301	NM_005211.3	705	Gag/Aag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460538	8460538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772029273		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	129	374	1	ENST00000356435.5:c.3748G>A	p.Val1250Met	p.V1250M	ENST00000356435		1250	Gtg/Atg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	157	546	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	144	338	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ATM	472	MSKCC	GRCh37	11	108201089	108201089	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779865		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	105	317	0	ENST00000278616.4:c.7456C>T	p.Arg2486Ter	p.R2486*	ENST00000278616	NM_000051.3	2486	Cga/Tga																																																																															
AGO2	27161	MSKCC	GRCh37	8	141561492	141561492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	148	465	0	ENST00000220592.5:c.1313G>A	p.Arg438Gln	p.R438Q	ENST00000220592	NM_012154.3	438	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223175	36223175	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	179	575	1	ENST00000222270.7:c.5730del	p.Arg1911AspfsTer23	p.R1911Dfs*23	ENST00000222270	NM_014727.1	1909	Ccc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441816	49441816	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	171	484	3	ENST00000301067.7:c.4168del	p.Ala1390GlnfsTer27	p.A1390Qfs*27	ENST00000301067	NM_003482.3	1390	Gca/ca																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911587	114911587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	169	437	0	ENST00000543371.1:c.1105G>A	p.Val369Ile	p.V369I	ENST00000543371	NM_001198531.1	369	Gta/Ata																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	159	520	4	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
IKZF1	10320	MSKCC	GRCh37	7	50467921	50467921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	132	415	0	ENST00000331340.3:c.1156C>T	p.Arg386Cys	p.R386C	ENST00000331340	NM_006060.4	386	Cgc/Tgc																																																																															
KDR	3791	MSKCC	GRCh37	4	55976689	55976689	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747477930		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	121	405	0	ENST00000263923.4:c.1136C>T	p.Ala379Val	p.A379V	ENST00000263923	NM_002253.2	379	gCg/gTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212483963	212483963	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	100	318	0	ENST00000342788.4:c.2240C>A	p.Pro747His	p.P747H	ENST00000342788	NM_005235.2	747	cCt/cAt																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797401	45797401	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35352891		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	163	540	0	ENST00000372115.3:c.1076C>T	p.Ala359Val	p.A359V	ENST00000372115	NM_001048171.1	359	gCc/gTc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458578	120458578	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148759277		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	161	440	0	ENST00000256646.2:c.6767G>A	p.Arg2256His	p.R2256H	ENST00000256646	NM_024408.3	2256	cGc/cAc																																																																															
FANCC	2176	MSKCC	GRCh37	9	97912356	97912356	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs769039987		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	114	285	0	ENST00000289081.3:c.535C>T	p.Arg179Ter	p.R179*	ENST00000289081	NM_000136.2	179	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223431	36223431	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs546000224		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	241	637	0	ENST00000222270.7:c.5981C>T	p.Ala1994Val	p.A1994V	ENST00000222270	NM_014727.1	1994	gCg/gTg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9778817	9778817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	162	516	0	ENST00000377346.4:c.1086G>T	p.Glu362Asp	p.E362D	ENST00000377346	NM_005026.3	362	gaG/gaT																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180582	94180582	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	47	359	0	ENST00000323929.3:c.1586T>C	p.Leu529Pro	p.L529P	ENST00000323929	NM_005591.3	529	cTc/cCc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022550	12022550	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs752454285		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	153	510	0	ENST00000396373.4:c.656A>G	p.Gln219Arg	p.Q219R	ENST00000396373	NM_001987.4	219	cAg/cGg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434812	99434812	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	120	459	0	ENST00000268035.6:c.899A>C	p.Asp300Ala	p.D300A	ENST00000268035	NM_000875.3	300	gAc/gCc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	339524	339524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	189	573	0	ENST00000262320.3:c.2378C>A	p.Pro793His	p.P793H	ENST00000262320	NM_003502.3	793	cCc/cAc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56871563	56871563	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1269746871		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	139	384	0	ENST00000308159.5:c.1943C>T	p.Pro648Leu	p.P648L	ENST00000308159	NM_014669.4	648	cCt/cTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829079	72829079	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	136	526	0	ENST00000268489.5:c.7502C>A	p.Pro2501His	p.P2501H	ENST00000268489	NM_006885.3	2501	cCt/cAt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805344	89805344	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	143	428	1	ENST00000389301.3:c.4206del	p.Leu1403CysfsTer4	p.L1403Cfs*4	ENST00000389301	NM_000135.2	1402	ttT/tt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89877377	89877377	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs577625130		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	168	436	1	ENST00000389301.3:c.386C>T	p.Ala129Val	p.A129V	ENST00000389301	NM_000135.2	129	gCg/gTg																																																																															
MSI2	124540	MSKCC	GRCh37	17	55752347	55752347	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1485302383		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	164	507	0	ENST00000284073.2:c.805C>T	p.Arg269Trp	p.R269W	ENST00000284073	NM_138962.2	269	Cgg/Tgg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2214544	2214544	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	192	539	0	ENST00000398665.3:c.1872G>T	p.Gln624His	p.Q624H	ENST00000398665	NM_032482.2	624	caG/caT																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46588037	46588037	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780349023		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	156	484	1	ENST00000263734.3:c.587C>T	p.Thr196Met	p.T196M	ENST00000263734	NM_001430.4	196	aCg/aTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161945	47161945	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	107	249	0	ENST00000409792.3:c.4181A>G	p.Glu1394Gly	p.E1394G	ENST00000409792	NM_014159.6	1394	gAa/gGa																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505038	186505039	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	78	251	0	ENST00000323963.5:c.896_897del	p.Thr299SerfsTer7	p.T299Sfs*7	ENST00000323963		298	ttCAca/ttca																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99812387	99812387	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	87	317	0	ENST00000280892.6:c.281+1G>A		p.X94_splice	ENST00000280892	NM_001130678.1	94																																																																																
FAT1	2195	MSKCC	GRCh37	4	187540268	187540268	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760291675		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	122	331	0	ENST00000441802.2:c.7472C>T	p.Ala2491Val	p.A2491V	ENST00000441802	NM_005245.3	2491	gCt/gTt																																																																															
SDHA	6389	MSKCC	GRCh37	5	236639	236639	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770028533		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	124	395	0	ENST00000264932.6:c.1357G>A	p.Gly453Arg	p.G453R	ENST00000264932	NM_004168.2	453	Ggg/Agg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589652	67589652	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1383740979		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	57	114	0	ENST00000274335.5:c.1415G>A	p.Arg472His	p.R472H	ENST00000274335		472	cGc/cAc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517800	176517800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199792541		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	142	496	0	ENST00000292408.4:c.410C>T	p.Ser137Leu	p.S137L	ENST00000292408	NM_213647.1	137	tCg/tTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180041155	180041155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	176	583	0	ENST00000261937.6:c.3244G>A	p.Ala1082Thr	p.A1082T	ENST00000261937	NM_182925.4	1082	Gcc/Acc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324660	31324660	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	185	419	0	ENST00000412585.2:c.148G>T	p.Gly50Cys	p.G50C	ENST00000412585	NM_005514.6	50	Ggc/Tgc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800486	32800486	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773325619		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	221	602	3	ENST00000374899.4:c.1061G>A	p.Arg354His	p.R354H	ENST00000374899	NM_018833.2	354	cGc/cAc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818233	32818234	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	207	523	0	ENST00000354258.4:c.1291_1292del	p.Leu431ValfsTer20	p.L431Vfs*20	ENST00000354258	NM_000593.5	431	CTg/g																																																																															
AGO2	27161	MSKCC	GRCh37	8	141557613	141557613	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	61	577	0	ENST00000220592.5:c.1702A>G	p.Asn568Asp	p.N568D	ENST00000220592	NM_012154.3	568	Aac/Gac																																																																															
TEK	7010	MSKCC	GRCh37	9	27168522	27168522	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	122	374	0	ENST00000380036.4:c.394A>G	p.Thr132Ala	p.T132A	ENST00000380036	NM_000459.3	132	Act/Gct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0042821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	395	789	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
SESN3	143686	MSKCC	GRCh37	11	94906431	94906431	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	107	448	0	ENST00000536441.1:c.1467del	p.His490IlefsTer2	p.H490Ifs*2	ENST00000536441	NM_144665.3	489	cgG/cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	81	312	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0042882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	216	721	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575194	48575194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	28	235	0	ENST00000342988.3:c.388C>T	p.Pro130Ser	p.P130S	ENST00000342988	NM_005359.5	130	Cca/Tca																																																																															
JUN	3725	MSKCC	GRCh37	1	59247764	59247764	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	48	562	0	ENST00000371222.2:c.979C>T	p.Gln327Ter	p.Q327*	ENST00000371222	NM_002228.3	327	Cag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42041356	42041356	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	65	497	0	ENST00000219905.7:c.5551A>T	p.Thr1851Ser	p.T1851S	ENST00000219905	NM_001164273.1	1851	Act/Tct																																																																															
ATR	545	MSKCC	GRCh37	3	142266577	142266577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	44	290	0	ENST00000350721.4:c.3347C>T	p.Pro1116Leu	p.P1116L	ENST00000350721	NM_001184.3	1116	cCt/cTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151960150	151960150	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	32	383	0	ENST00000262189.6:c.1250G>T	p.Cys417Phe	p.C417F	ENST00000262189	NM_170606.2	417	tGt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0042906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	125	515	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162741822	162741822	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs115169993		P-0042906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	64	284	0	ENST00000367921.3:c.1513G>A	p.Gly505Ser	p.G505S	ENST00000367921	NM_006182.2	505	Ggt/Agt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959064	2959064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	102	523	1	ENST00000396946.4:c.2452C>T	p.Arg818Trp	p.R818W	ENST00000396946	NM_032415.4	818	Cgg/Tgg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117737446	117737446	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	88	264	0	ENST00000368508.3:c.203A>G	p.Asp68Gly	p.D68G	ENST00000368508	NM_002944.2	68	gAt/gGt																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0042911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	50	166	0	ENST00000412916.2:c.165+1G>C		p.X55_splice	ENST00000412916		55																																																																																
GATA3	2625	MSKCC	GRCh37	10	8115705	8115706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0042911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	63	273	0	ENST00000346208.3:c.1053_1054dup	p.Arg352ThrfsTer4	p.R352Tfs*4	ENST00000346208		351	aac/aACac																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032467	12032475	+	inframe_deletion	In_Frame_Del	DEL	CACAGGCCG	CACAGGCCG	-			P-0042911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	36	303	0	ENST00000353533.5:c.903_911del	p.Thr302_Arg304del	p.T302_R304del	ENST00000353533	NM_003010.3	301	gcCACAGGCCGa/gca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	275	470	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0042982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	283	836	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741894	17741894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	33	135	0	ENST00000250003.3:c.565G>A	p.Gly189Ser	p.G189S	ENST00000250003	NM_002478.4	189	Ggc/Agc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29068968	29068968	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	27	263	0	ENST00000282397.4:c.13T>G	p.Trp5Gly	p.W5G	ENST00000282397	NM_002019.4	5	Tgg/Ggg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	59	463	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460516	149460516	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	70	788	0	ENST00000286301.3:c.121C>T	p.Arg41Ter	p.R41*	ENST00000286301	NM_005211.3	41	Cga/Tga																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	47	392	2	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	49	550	2	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028632	12028632	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753665559		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	32	447	1	ENST00000353533.5:c.835G>A	p.Ala279Thr	p.A279T	ENST00000353533	NM_003010.3	279	Gca/Aca																																																																															
ATM	472	MSKCC	GRCh37	11	108160488	108160488	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs730881369		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	30	561	0	ENST00000278616.4:c.4396C>T	p.Arg1466Ter	p.R1466*	ENST00000278616	NM_000051.3	1466	Cga/Tga																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371662	55371662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	54	632	0	ENST00000297316.4:c.352G>A	p.Val118Met	p.V118M	ENST00000297316	NM_022454.3	118	Gtg/Atg																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790819	89790819	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1370	80	687	5	ENST00000336032.3:c.211del	p.Gln71SerfsTer112	p.Q71Sfs*112	ENST00000336032	NM_006813.2	69	aCc/ac																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945659	54945659	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753238269		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	21	244	1	ENST00000312783.6:c.911G>A	p.Arg304Gln	p.R304Q	ENST00000312783	NM_198436.1	304	cGg/cAg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	70	774	0	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1396	97	881	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021815	71021815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	30	264	0	ENST00000318789.4:c.1543C>T	p.His515Tyr	p.H515Y	ENST00000318789	NM_032682.5	515	Cat/Tat																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969369	44969369	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1318649487		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	25	264	0	ENST00000377967.4:c.4051C>T	p.Arg1351Ter	p.R1351*	ENST00000377967	NM_021140.2	1351	Cga/Tga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121912	2121912	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201769220		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	86	768	0	ENST00000219476.3:c.2074G>A	p.Val692Ile	p.V692I	ENST00000219476	NM_000548.3	692	Gtc/Atc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55269020	55269020	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182857647		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	63	753	0	ENST00000275493.2:c.3086C>T	p.Thr1029Met	p.T1029M	ENST00000275493	NM_005228.3	1029	aCg/aTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258894	16258894	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1141	130	737	2	ENST00000375759.3:c.6164del	p.Pro2055LeufsTer9	p.P2055Lfs*9	ENST00000375759	NM_015001.2	2053	aaC/aa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112388	115112388	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs565848855		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	46	435	0	ENST00000257566.3:c.1352C>T	p.Ala451Val	p.A451V	ENST00000257566	NM_016569.3	451	gCg/gTg																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480543	50480543	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147034181		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	62	520	0	ENST00000394963.4:c.413G>A	p.Arg138His	p.R138H	ENST00000394963	NM_003076.4	138	cGt/cAt																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149375074	149375074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1646	106	847	0	ENST00000360632.3:c.20C>G	p.Pro7Arg	p.P7R	ENST00000360632	NM_015472.4	7	cCc/cGc																																																																															
RB1	5925	MSKCC	GRCh37	13	48939062	48939062	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	13	275	0	ENST00000267163.4:c.897del	p.Phe299LeufsTer2	p.F299Lfs*2	ENST00000267163	NM_000321.2	298	ccT/cc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940513	71940513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	113	646	0	ENST00000298229.2:c.664G>A	p.Val222Met	p.V222M	ENST00000298229	NM_001567.3	222	Gtg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427092	49427093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	43	614	0	ENST00000301067.7:c.11395dup	p.Gln3799ProfsTer213	p.Q3799Pfs*213	ENST00000301067	NM_003482.3	3799	cag/cCag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500650	99500651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	43	506	0	ENST00000268035.6:c.4087dup	p.Gln1363ProfsTer11	p.Q1363Pfs*11	ENST00000268035	NM_000875.3	1361	-/C																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108253	8108253	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1281	68	738	0	ENST00000585124.1:c.971A>G	p.His324Arg	p.H324R	ENST00000585124	NM_004217.3	324	cAc/cGc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1627401	1627401	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs771302868		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1094	66	736	0	ENST00000344749.5:c.323A>G	p.Tyr108Cys	p.Y108C	ENST00000344749	NM_001136139.2	108	tAt/tGt																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855589	45855589	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751956427		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	71	750	2	ENST00000391945.4:c.2068C>T	p.Arg690Trp	p.R690W	ENST00000391945	NM_000400.3	690	Cgg/Tgg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965358	25965358	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs572342520		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	67	699	0	ENST00000435504.4:c.3848G>A	p.Arg1283His	p.R1283H	ENST00000435504		1283	cGt/cAt																																																																															
ALK	238	MSKCC	GRCh37	2	29416185	29416185	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	77	609	0	ENST00000389048.3:c.4768G>T	p.Gly1590Cys	p.G1590C	ENST00000389048	NM_004304.4	1590	Ggc/Tgc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47639566	47639566	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	18	391	0	ENST00000233146.2:c.659G>C	p.Gly220Ala	p.G220A	ENST00000233146	NM_000251.2	220	gGa/gCa																																																																															
PMS1	5378	MSKCC	GRCh37	2	190660673	190660673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	19	343	0	ENST00000441310.2:c.311C>T	p.Ala104Val	p.A104V	ENST00000441310	NM_000534.4	104	gCt/gTt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530120	212530120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	40	405	0	ENST00000342788.4:c.1799C>T	p.Ala600Val	p.A600V	ENST00000342788	NM_005235.2	600	gCa/gTa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484608	57484608	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137854538		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	51	585	1	ENST00000371085.3:c.692G>A	p.Arg231His	p.R231H	ENST00000371085	NM_000516.4	231	cGc/cAc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021823	71021823	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	24	249	0	ENST00000318789.4:c.1535C>G	p.Ala512Gly	p.A512G	ENST00000318789	NM_032682.5	512	gCa/gGa																																																																															
IRF4	3662	MSKCC	GRCh37	6	401712	401712	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	48	688	0	ENST00000380956.4:c.1034A>G	p.Asp345Gly	p.D345G	ENST00000380956	NM_001195286.1	345	gAc/gGc																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43748555	43748555	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772901865		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	43	482	1	ENST00000523873.1:c.509G>A	p.Arg170His	p.R170H	ENST00000523873		170	cGc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099187	157099189	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	58	414	0	ENST00000346085.5:c.129_131del	p.Ala47del	p.A47del	ENST00000346085	NM_020732.3	42	GCG/-																																																																															
LYN	4067	MSKCC	GRCh37	8	56860234	56860234	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760301322		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	50	577	0	ENST00000519728.1:c.236C>T	p.Pro79Leu	p.P79L	ENST00000519728	NM_002350.3	79	cCg/cTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046408	69046408	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	57	588	0	ENST00000288368.4:c.3881A>G	p.Lys1294Arg	p.K1294R	ENST00000288368	NM_024870.2	1294	aAg/aGg																																																																															
ABL1	25	MSKCC	GRCh37	9	133760465	133760465	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758209901		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	62	720	0	ENST00000318560.5:c.2788G>A	p.Ala930Thr	p.A930T	ENST00000318560	NM_005157.4	930	Gca/Aca																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139811029	139811029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1132	62	677	0	ENST00000247668.2:c.640G>A	p.Val214Ile	p.V214I	ENST00000247668	NM_021138.3	214	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786202962		P-0043001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	193	662	1	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0043001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	170	441	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0043001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	84	374	0	ENST00000257430.4:c.4192_4193del	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627445	37627445	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	198	572	0	ENST00000447079.4:c.1360G>T	p.Glu454Ter	p.E454*	ENST00000447079	NM_015083.1	454	Gaa/Taa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56390436	56390436	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	108	376	0	ENST00000348428.3:c.1175del	p.Arg392LeufsTer11	p.R392Lfs*11	ENST00000348428	NM_006785.3	392	cGt/ct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	121	521	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0043019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	316	801	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0043019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	26	299	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
ATM	472	MSKCC	GRCh37	11	108175420	108175420	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786204751		P-0043019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	28	263	0	ENST00000278616.4:c.5515C>T	p.Gln1839Ter	p.Q1839*	ENST00000278616	NM_000051.3	1839	Cag/Tag																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475134	40475134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	96	694	0	ENST00000264657.5:c.1776G>T	p.Glu592Asp	p.E592D	ENST00000264657	NM_139276.2	592	gaG/gaT																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553685	106553686	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	86	570	0	ENST00000369096.4:c.1655dup	p.Asn552LysfsTer81	p.N552Kfs*81	ENST00000369096	NM_001198.3	550	-/A																																																																															
IL10	3586	MSKCC	GRCh37	1	206944760	206944760	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0043059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	119	525	0	ENST00000423557.1:c.166C>T	p.Gln56Ter	p.Q56*	ENST00000423557	NM_000572.2	56	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	28	467	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70338701	70338701	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs769202858		P-0043162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	35	636	0	ENST00000374080.3:c.97G>A	p.Glu33Lys	p.E33K	ENST00000374080		33	Gag/Aag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478817	56478817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	37	787	0	ENST00000267101.3:c.273G>T	p.Met91Ile	p.M91I	ENST00000267101	NM_001982.3	91	atG/atT																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482864	67482864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	54	523	0	ENST00000327367.4:c.1268G>A	p.Ser423Asn	p.S423N	ENST00000327367	NM_005902.3	423	aGt/aAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435170	56435171	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	71	890	0	ENST00000407977.2:c.1966dup	p.Arg656LysfsTer91	p.R656Kfs*91	ENST00000407977		656	agg/aAgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0043225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	171	349	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12043921	12043921	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	1209	434	0	ENST00000396373.4:c.1300C>G	p.Leu434Val	p.L434V	ENST00000396373	NM_001987.4	434	Ctg/Gtg																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72893575	72893575	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0043225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	200	439	0	ENST00000325599.8:c.144-1G>A		p.X48_splice	ENST00000325599	NM_018130.2	48																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803120	1803120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1162571458		P-0043225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	271	663	0	ENST00000260795.2:c.472C>T	p.Arg158Trp	p.R158W	ENST00000260795		158	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0043274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	86	469	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928078	178928080	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0043274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	39	612	0	ENST00000263967.3:c.1359_1361del	p.Glu453del	p.E453del	ENST00000263967	NM_006218.2	452	ttAGAa/tta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0043326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			5	129	915	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
HGF	3082	MSKCC	GRCh37	7	81346550	81346550	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs148293411		P-0043326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	84	434	0	ENST00000222390.5:c.1403G>A	p.Arg468His	p.R468H	ENST00000222390	NM_000601.4	468	cGt/cAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992708	68992708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	97	778	0	ENST00000288368.4:c.1673C>T	p.Pro558Leu	p.P558L	ENST00000288368	NM_024870.2	558	cCc/cTc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992747	68992747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	88	830	0	ENST00000288368.4:c.1712G>A	p.Gly571Glu	p.G571E	ENST00000288368	NM_024870.2	571	gGa/gAa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857376	9857376	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	71	715	0	ENST00000330684.3:c.4025C>G	p.Ser1342Cys	p.S1342C	ENST00000330684	NM_001134407.1	1342	tCc/tGc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858072	9858072	+	stop_gained	Nonsense_Mutation	SNP	G	G	C	rs1244209721		P-0043326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	88	753	0	ENST00000330684.3:c.3329C>G	p.Ser1110Ter	p.S1110*	ENST00000330684	NM_001134407.1	1110	tCa/tGa																																																																															
ALK	238	MSKCC	GRCh37	2	29543640	29543640	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs995433670		P-0043326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	19	789	1	ENST00000389048.3:c.1523A>T	p.Asp508Val	p.D508V	ENST00000389048	NM_004304.4	508	gAt/gTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540260	187540260	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	69	555	0	ENST00000441802.2:c.7480C>T	p.Gln2494Ter	p.Q2494*	ENST00000441802	NM_005245.3	2494	Cag/Tag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	168	426	2	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	369	687	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	255	525	2	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	112	324	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	85	162	0	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																																																															
PTEN	5728	MSKCC	GRCh37	10	89693003	89693003	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	149	437	0	ENST00000371953.3:c.491del	p.Lys164ArgfsTer3	p.K164Rfs*3	ENST00000371953	NM_000314.4	163	Aaa/aa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351359	89351359	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756332789		P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	376	769	0	ENST00000301030.4:c.1591G>A	p.Ala531Thr	p.A531T	ENST00000301030	NM_001256183.1	531	Gcc/Acc																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	59	498	2	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549835	187549835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	161	449	1	ENST00000441802.2:c.4406C>T	p.Thr1469Ile	p.T1469I	ENST00000441802	NM_005245.3	1469	aCa/aTa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9783211	9783211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	272	541	0	ENST00000377346.4:c.2455G>A	p.Gly819Arg	p.G819R	ENST00000377346	NM_005026.3	819	Ggg/Agg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	261	681	1	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164508	47164508	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201756643		P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	171	410	1	ENST00000409792.3:c.1618C>T	p.Arg540Ter	p.R540*	ENST00000409792	NM_014159.6	540	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	335	683	3	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
BTK	695	MSKCC	GRCh37	X	100629549	100629549	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	196	308	0	ENST00000308731.7:c.215del	p.Asn72IlefsTer49	p.N72Ifs*49	ENST00000308731	NM_000061.2	72	aAt/at																																																																															
MTOR	2475	MSKCC	GRCh37	1	11186697	11186697	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780210598		P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	227	490	0	ENST00000361445.4:c.6508C>T	p.Arg2170Trp	p.R2170W	ENST00000361445	NM_004958.3	2170	Cgg/Tgg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47643462	47643462	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63750502		P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	157	539	1	ENST00000233146.2:c.970C>T	p.Gln324Ter	p.Q324*	ENST00000233146	NM_000251.2	324	Cag/Tag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987388	2987388	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1192456063		P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	229	552	1	ENST00000396946.4:c.41C>T	p.Thr14Met	p.T14M	ENST00000396946	NM_032415.4	14	aCg/aTg																																																																															
ATM	472	MSKCC	GRCh37	11	108186625	108186625	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876659454		P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	31	411	0	ENST00000278616.4:c.6082C>T	p.Gln2028Ter	p.Q2028*	ENST00000278616	NM_000051.3	2028	Caa/Taa																																																																															
POLE	5426	MSKCC	GRCh37	12	133245405	133245405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	297	671	1	ENST00000320574.5:c.1915C>T	p.Arg639Cys	p.R639C	ENST00000320574	NM_006231.2	639	Cgc/Tgc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753384	42753385	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	377	694	0	ENST00000222329.4:c.879dup	p.Pro294AlafsTer15	p.P294Afs*15	ENST00000222329	NM_006494.2	293	-/G																																																																															
CIC	23152	MSKCC	GRCh37	19	42798163	42798163	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	295	643	0	ENST00000575354.2:c.4117del	p.Ser1373ProfsTer42	p.S1373Pfs*42	ENST00000575354	NM_015125.3	1373	Tcc/cc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530072	212530072	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	294	311	0	ENST00000342788.4:c.1847C>A	p.Pro616Gln	p.P616Q	ENST00000342788	NM_005235.2	616	cCa/cAa																																																																															
NF2	4771	MSKCC	GRCh37	22	30051644	30051644	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	184	310	0	ENST00000338641.4:c.578del	p.Ala193GlufsTer16	p.A193Efs*16	ENST00000338641	NM_000268.3	193	gCa/ga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643863	52643863	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1187519621		P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	121	480	0	ENST00000394830.3:c.2033G>A	p.Arg678His	p.R678H	ENST00000394830	NM_018313.4	678	cGc/cAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884563	151884563	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	189	381	0	ENST00000262189.6:c.4794-2A>G		p.X1598_splice	ENST00000262189	NM_170606.2	1598																																																																																
PTCH1	5727	MSKCC	GRCh37	9	98239040	98239040	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	157	352	1	ENST00000331920.6:c.1602+1G>A		p.X534_splice	ENST00000331920	NM_000264.3	534																																																																																
NRAS	4893	MSKCC	GRCh37	1	115258744	115258744	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121434596		P-0043371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	136	382	2	ENST00000369535.4:c.38G>T	p.Gly13Val	p.G13V	ENST00000369535	NM_002524.4	13	gGt/gTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692901	89692901	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	121	387	0	ENST00000371953.3:c.385G>T	p.Gly129Ter	p.G129*	ENST00000371953	NM_000314.4	129	Gga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264066389		P-0043371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	274	498	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	102	386	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825518	50825519	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1219062549		P-0043371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	69	318	0	ENST00000398568.2:c.2156dup	p.Asn719LysfsTer2	p.N719Kfs*2	ENST00000398568	NM_001042412.1	717	gaa/gAaa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63531801	63531801	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	492	584	0	ENST00000307078.5:c.2180C>A	p.Ser727Ter	p.S727*	ENST00000307078	NM_004655.3	727	tCg/tAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs80338963		P-0043371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	17	363	0	ENST00000342988.3:c.1081C>A	p.Arg361Ser	p.R361S	ENST00000342988	NM_005359.5	361	Cgc/Agc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139754	55139754	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs201223501		P-0043371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	177	533	0	ENST00000257290.5:c.1415T>G	p.Ile472Ser	p.I472S	ENST00000257290	NM_006206.4	472	aTc/aGc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876448	35876448	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	318	555	0	ENST00000303115.3:c.1240del	p.Thr414ArgfsTer13	p.T414Rfs*13	ENST00000303115	NM_002185.3	414	Acg/cg																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0043371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	104	274	0	ENST00000257430.4:c.4391_4394del	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225683	26225683	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs750903931		P-0043371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	57	583	0	ENST00000360408.1:c.301T>G	p.Leu101Val	p.L101V	ENST00000360408	NM_003532.2	101	Ttg/Gtg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	451	721	2	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0043522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	576	463	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727451	66727451	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519729		P-0043522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	87	420	0	ENST00000307102.5:c.167A>C	p.Gln56Pro	p.Q56P	ENST00000307102	NM_002755.3	56	cAg/cCg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767326		P-0043522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	77	228	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577529	7577529	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs730882027		P-0043522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	244	510	0	ENST00000269305.4:c.752T>G	p.Ile251Ser	p.I251S	ENST00000269305	NM_001126112.2	251	aTc/aGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	116	333	0	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411522	63411522	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746279756		P-0043522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	574	636	2	ENST00000330258.3:c.1645C>T	p.Arg549Trp	p.R549W	ENST00000330258	NM_152424.3	549	Cgg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41420011	41420011	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773011187		P-0043522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	159	381	2	ENST00000373198.4:c.310G>A	p.Asp104Asn	p.D104N	ENST00000373198	NM_133170.3	104	Gac/Aac																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021340	31021340	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	180	453	0	ENST00000375687.4:c.1342del	p.Leu448SerfsTer14	p.L448Sfs*14	ENST00000375687	NM_015338.5	447	Ccc/cc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89478284	89478284	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	56	293	0	ENST00000336596.2:c.2103C>A	p.Tyr701Ter	p.Y701*	ENST00000336596	NM_005233.5	701	taC/taA																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004885	150004885	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	156	349	0	ENST00000253339.5:c.1340G>C	p.Ser447Thr	p.S447T	ENST00000253339		447	aGt/aCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0043620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	309	480	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913250		P-0043620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	271	268	0	ENST00000369535.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000369535	NM_002524.4	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0043620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	145	296	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	18	225	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	60	417	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0043661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	123	760	1	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217651	7217651	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	79	461	0	ENST00000380728.2:c.276del	p.Val93PhefsTer16	p.V93Ffs*16	ENST00000380728		92	aaA/aa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94219121	94219121	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	56	389	0	ENST00000323929.3:c.283A>T	p.Ser95Cys	p.S95C	ENST00000323929	NM_005591.3	95	Agt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	85	238	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0043687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	125	270	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577017	7577017	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0043687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	157	480	0	ENST00000269305.4:c.919+2T>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
PRKD1	5587	MSKCC	GRCh37	14	30093362	30093362	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	56	142	0	ENST00000331968.5:c.1901T>G	p.Leu634Arg	p.L634R	ENST00000331968	NM_002742.2	634	cTa/cGa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111417	56111417	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	70	206	0	ENST00000399503.3:c.17G>C	p.Gly6Ala	p.G6A	ENST00000399503	NM_005921.1	6	gGg/gCg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101909967	101909967	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0043687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	30	46	0	ENST00000374994.4:c.1287T>A	p.Tyr429Ter	p.Y429*	ENST00000374994	NM_004612.2	429	taT/taA																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0043688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	171	336	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
AKT1	207	MSKCC	GRCh37	14	105243045	105243046	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTGCAGGCAGCGGATGATGAAGGTGTTGGGCCGGGGCCGCTCCGT			P-0043688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	180	565	0	ENST00000349310.3:c.193_237dup	p.Thr65_Gln79dup	p.T65_Q79dup	ENST00000349310	NM_001014432.1	65	-/ACGGAGCGGCCCCGGCCCAACACCTTCATCATCCGCTGCCTGCAG																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576214	88576214	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750565995		P-0043688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	222	433	1	ENST00000360948.2:c.1459G>A	p.Gly487Ser	p.G487S	ENST00000360948	NM_001012338.2	487	Ggc/Agc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70982016	70982016	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	217	580	0	ENST00000276594.2:c.80C>A	p.Ala27Asp	p.A27D	ENST00000276594	NM_024504.3	27	gCc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0043712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	122	629	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	62	295	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593505	48593505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	54	201	0	ENST00000342988.3:c.1256G>T	p.Gly419Val	p.G419V	ENST00000342988	NM_005359.5	419	gGg/gTg																																																																															
PARP1	142	MSKCC	GRCh37	1	226555271	226555272	+	missense_variant	Missense_Mutation	DNP	CT	CT	AC			P-0043712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	46	395	1	ENST00000366794.5:c.2315_2316delinsGT	p.Glu772Gly	p.E772G	ENST00000366794	NM_001618.3	772	gAG/gGT																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266025	41266222	+	inframe_deletion	In_Frame_Del	DEL	ATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCC	ATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCC	-			P-0043712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	10	228	0	ENST00000349496.5:c.22_219del	p.Met8_Ser73del	p.M8_S73del	ENST00000349496	NM_001904.3	8	ATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCC/-																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199892	138199892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	28	404	0	ENST00000237289.4:c.1310C>A	p.Ala437Asp	p.A437D	ENST00000237289	NM_001270507.1	437	gCc/gAc																																																																															
MET	4233	MSKCC	GRCh37	7	116397756	116397756	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0043712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	83	415	0	ENST00000397752.3:c.2030T>G	p.Leu677Ter	p.L677*	ENST00000397752	NM_000245.2	677	tTa/tGa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0043840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	307	656	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
SPOP	8405	MSKCC	GRCh37	17	47699351	47699351	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	259	443	0	ENST00000347630.2:c.157A>G	p.Lys53Glu	p.K53E	ENST00000347630	NM_001007230.1	53	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0043853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	212	557	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175225	112175225	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	56	227	0	ENST00000257430.4:c.3934G>T	p.Gly1312Ter	p.G1312*	ENST00000257430	NM_000038.5	1312	Gga/Tga																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871807	12871807	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	155	283	0	ENST00000228872.4:c.524del	p.Ser175Ter	p.S175*	ENST00000228872	NM_004064.3	175	tCa/ta																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696456	47696456	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	126	428	0	ENST00000347630.2:c.367T>G	p.Tyr123Asp	p.Y123D	ENST00000347630	NM_001007230.1	123	Tat/Gat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0044182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	108	383	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	226	796	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149510160	149510160	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772355478		P-0044182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	220	786	1	ENST00000261799.4:c.1309C>T	p.Arg437Cys	p.R437C	ENST00000261799	NM_002609.3	437	Cgt/Tgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786202918		P-0044182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	248	470	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229444	36229444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	146	548	2	ENST00000222270.7:c.8134C>T	p.Arg2712Trp	p.R2712W	ENST00000222270	NM_014727.1	2712	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112178001	112178001	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1299714632		P-0044182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	37	438	0	ENST00000257430.4:c.6710G>A	p.Arg2237Gln	p.R2237Q	ENST00000257430	NM_000038.5	2237	cGa/cAa																																																																															
PPARG	5468	MSKCC	GRCh37	3	12447433	12447433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	167	634	0	ENST00000287820.6:c.672G>T	p.Glu224Asp	p.E224D	ENST00000287820	NM_015869.4	224	gaG/gaT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118362470	118362470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	83	298	0	ENST00000534358.1:c.4831G>A	p.Glu1611Lys	p.E1611K	ENST00000534358	NM_005933.3	1611	Gag/Aag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245567	46245567	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	98	369	0	ENST00000334344.6:c.3661C>T	p.Gln1221Ter	p.Q1221*	ENST00000334344	NM_152641.2	1221	Caa/Taa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246008	46246008	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	92	382	0	ENST00000334344.6:c.4102G>A	p.Asp1368Asn	p.D1368N	ENST00000334344	NM_152641.2	1368	Gat/Aat																																																																															
PALB2	79728	MSKCC	GRCh37	16	23632726	23632726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	122	537	0	ENST00000261584.4:c.3070G>A	p.Glu1024Lys	p.E1024K	ENST00000261584	NM_024675.3	1024	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68845621	68845621	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	183	679	0	ENST00000261769.5:c.868del	p.Asp290ThrfsTer4	p.D290Tfs*4	ENST00000261769	NM_004360.3	289	gcG/gc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72863759	72863759	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0044182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	132	459	0	ENST00000268489.5:c.3449-1G>A		p.X1150_splice	ENST00000268489	NM_006885.3	1150																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5216734	5216734	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	138	509	0	ENST00000357368.4:c.4093G>C	p.Glu1365Gln	p.E1365Q	ENST00000357368	NM_002850.3	1365	Gaa/Caa																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22143055	22143055	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	139	463	0	ENST00000215832.6:c.652C>G	p.Leu218Val	p.L218V	ENST00000215832	NM_002745.4	218	Ctg/Gtg																																																																															
VHL	7428	MSKCC	GRCh37	3	10191535	10191535	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	125	568	0	ENST00000256474.2:c.528G>C	p.Arg176Ser	p.R176S	ENST00000256474	NM_000551.3	176	agG/agC																																																																															
ATR	545	MSKCC	GRCh37	3	142168353	142168353	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	108	431	0	ENST00000350721.4:c.7853G>C	p.Gly2618Ala	p.G2618A	ENST00000350721	NM_001184.3	2618	gGa/gCa																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749533	41749533	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1402111533		P-0044182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	159	617	1	ENST00000226382.2:c.262G>A	p.Asp88Asn	p.D88N	ENST00000226382	NM_003924.3	88	Gac/Aac																																																																															
IRF4	3662	MSKCC	GRCh37	6	394992	394992	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	116	548	0	ENST00000380956.4:c.388G>C	p.Glu130Gln	p.E130Q	ENST00000380956	NM_001195286.1	130	Gag/Cag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864720	68864720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	114	493	0	ENST00000288368.4:c.91C>G	p.Leu31Val	p.L31V	ENST00000288368	NM_024870.2	31	Ctc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660548		P-0044208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	369	773	2	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864914	117864914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	137	277	0	ENST00000297338.2:c.1195G>A	p.Glu399Lys	p.E399K	ENST00000297338	NM_006265.2	399	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0044289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	94	266	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254906	16254906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	25	446	0	ENST00000375759.3:c.2171G>A	p.Arg724Gln	p.R724Q	ENST00000375759	NM_015001.2	724	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577128	7577128	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	151	612	0	ENST00000269305.4:c.810T>A	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	ttT/ttA																																																																															
SUFU	51684	MSKCC	GRCh37	10	104386977	104386977	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	12	286	0	ENST00000369902.3:c.1342G>C	p.Glu448Gln	p.E448Q	ENST00000369902	NM_016169.3	448	Gaa/Caa																																																																															
MSI2	124540	MSKCC	GRCh37	17	55704588	55704588	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0044289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	86	621	1	ENST00000284073.2:c.653-2A>G		p.X218_splice	ENST00000284073	NM_138962.2	218																																																																																
BRD4	23476	MSKCC	GRCh37	19	15383868	15383868	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	54	490	0	ENST00000263377.2:c.43C>G	p.Pro15Ala	p.P15A	ENST00000263377	NM_058243.2	15	Cca/Gca																																																																															
SMO	6608	MSKCC	GRCh37	7	128846345	128846345	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	84	607	0	ENST00000249373.3:c.1181A>G	p.Tyr394Cys	p.Y394C	ENST00000249373	NM_005631.4	394	tAc/tGc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	110	354	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576919	7576919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	331	555	0	ENST00000269305.4:c.927del	p.Asn310ThrfsTer35	p.N310Tfs*35	ENST00000269305	NM_001126112.2	309	ccC/cc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	110	206	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	234	409	2	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137020	64137020	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1174133485		P-0044412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	335	618	1	ENST00000334205.4:c.1531C>T	p.Arg511Cys	p.R511C	ENST00000334205	NM_003942.2	511	Cgc/Tgc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279668	123279668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	96	373	0	ENST00000358487.5:c.764G>A	p.Arg255Gln	p.R255Q	ENST00000358487	NM_000141.4	255	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49418445	49418445	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745599611		P-0044412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	74	633	1	ENST00000301067.7:c.15968G>A	p.Arg5323His	p.R5323H	ENST00000301067	NM_003482.3	5323	cGc/cAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118377246	118377246	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	222	438	0	ENST00000534358.1:c.10639C>T	p.Gln3547Ter	p.Q3547*	ENST00000534358	NM_005933.3	3547	Cag/Tag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741528	145741531	+	frameshift_variant	Frame_Shift_Del	DEL	GGAG	GGAG	-			P-0044412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	208	916	0	ENST00000428558.2:c.972_975del	p.Ser325ValfsTer33	p.S325Vfs*33	ENST00000428558	NM_004260.3	324	ccCTCC/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0044449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	210	872	3	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0044449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	199	420	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0044449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	104	436	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920337	134920337	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141607080		P-0044449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	46	577	0	ENST00000398015.3:c.2152G>A	p.Val718Met	p.V718M	ENST00000398015	NM_004441.4	718	Gtg/Atg																																																																															
ATM	472	MSKCC	GRCh37	11	108115726	108115726	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	67	223	0	ENST00000278616.4:c.875del	p.Pro292ArgfsTer28	p.P292Rfs*28	ENST00000278616	NM_000051.3	292	Ccg/cg																																																																															
RB1	5925	MSKCC	GRCh37	13	48941740	48941740	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587776782		P-0044449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	65	180	0	ENST00000267163.4:c.1049+1G>A		p.X350_splice	ENST00000267163	NM_000321.2	350																																																																																
SLX4	84464	MSKCC	GRCh37	16	3632566	3632566	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1205902549		P-0044449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	120	1013	0	ENST00000294008.3:c.5282G>A	p.Arg1761His	p.R1761H	ENST00000294008	NM_032444.2	1761	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0044467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	112	112	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44950099	44950099	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	65	74	0	ENST00000377967.4:c.3868G>T	p.Glu1290Ter	p.E1290*	ENST00000377967	NM_021140.2	1290	Gaa/Taa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39224170	39224170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	25	72	0	ENST00000402219.2:c.2974G>A	p.Glu992Lys	p.E992K	ENST00000402219	NM_005633.3	992	Gaa/Aaa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11168338	11168338	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	138	368	3	ENST00000361445.4:c.7534G>T	p.Asp2512Tyr	p.D2512Y	ENST00000361445	NM_004958.3	2512	Gac/Tac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061226	38061226	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	255	794	0	ENST00000250448.2:c.763G>C	p.Glu255Gln	p.E255Q	ENST00000250448	NM_004496.3	255	Gag/Cag																																																																															
CDH1	999	MSKCC	GRCh37	16	68863691	68863692	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATTG			P-0044467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	134	517	0	ENST00000261769.5:c.2433_2436dup	p.Glu813Ter	p.E813*	ENST00000261769	NM_004360.3	810	-/ATTG																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	145	416	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	156	419	2	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	164	568	6	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	178	874	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	190	777	0	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	152	605	1	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	118	390	1	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154242	2154242	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1388678905		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	47	897	1	ENST00000434045.2:c.686del	p.Pro229GlnfsTer27	p.P229Qfs*27	ENST00000434045	NM_001127598.1	229	cCa/ca																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118885	70118885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	201	736	0	ENST00000245479.2:c.457C>T	p.Pro153Ser	p.P153S	ENST00000245479	NM_000346.3	153	Ccc/Tcc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670357	134670357	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369940994		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	133	486	0	ENST00000398015.3:c.268C>T	p.Arg90Cys	p.R90C	ENST00000398015	NM_004441.4	90	Cgc/Tgc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277254	41277254	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs797044875		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	113	373	1	ENST00000349496.5:c.1723G>A	p.Gly575Arg	p.G575R	ENST00000349496	NM_001904.3	575	Gga/Aga																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885145	111885145	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	169	709	1	ENST00000341259.2:c.1038del	p.Leu347CysfsTer26	p.L347Cfs*26	ENST00000341259	NM_005475.2	345	Ggg/gg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	131	671	1	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																																																															
ATRX	546	MSKCC	GRCh37	X	76920173	76920173	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	167	456	3	ENST00000373344.5:c.3904del	p.Arg1302GlufsTer44	p.R1302Efs*44	ENST00000373344	NM_000489.3	1302	Aga/ga																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661663	227661664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761880048		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	150	663	16	ENST00000305123.5:c.1791dup	p.His598AlafsTer13	p.H598Afs*13	ENST00000305123	NM_005544.2	597	-/G																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103754	47103755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC	rs749901643		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	210	528	0	ENST00000409792.3:c.6190_6191dup	p.Asp2064GlufsTer84	p.D2064Efs*84	ENST00000409792	NM_014159.6	2064	gac/gaGAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047959	180047959	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs933223149		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	262	951	0	ENST00000261937.6:c.2216G>A	p.Arg739His	p.R739H	ENST00000261937	NM_182925.4	739	cGc/cAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913558	32913559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1265028174		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	124	379	0	ENST00000380152.3:c.5073dup	p.Trp1692MetfsTer3	p.W1692Mfs*3	ENST00000380152		1689	gca/gcAa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	227	845	3	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185183609	185183609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	147	415	0	ENST00000265026.3:c.1463C>T	p.Ala488Val	p.A488V	ENST00000265026	NM_004721.4	488	gCc/gTc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72058500	72058500	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1428865181		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	137	400	0	ENST00000357731.5:c.940C>T	p.Pro314Ser	p.P314S	ENST00000357731	NM_173808.2	314	Cct/Tct																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622330	1622330	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377067150		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	234	939	4	ENST00000344749.5:c.634G>A	p.Ala212Thr	p.A212T	ENST00000344749	NM_001136139.2	212	Gcc/Acc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933617	39933617	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	179	661	1	ENST00000378444.4:c.982del	p.Asp328ThrfsTer50	p.D328Tfs*50	ENST00000378444	NM_001123385.1	328	Gac/ac																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119562149	119562149	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149631706		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	138	445	0	ENST00000316626.5:c.1187G>A	p.Arg396Gln	p.R396Q	ENST00000316626		396	cGg/cAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC	rs1361078163		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	92	456	0	ENST00000234420.5:c.3260_3261dup	p.Phe1088ProfsTer3	p.F1088Pfs*3	ENST00000234420	NM_000179.2	1085	acc/aCCcc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670340	134670340	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1415689583		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	115	485	0	ENST00000398015.3:c.251G>A	p.Arg84His	p.R84H	ENST00000398015	NM_004441.4	84	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	233	992	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739894	41739894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	140	487	1	ENST00000242208.4:c.79G>A	p.Glu27Lys	p.E27K	ENST00000242208	NM_002192.2	27	Gag/Aag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	216	826	1	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146944	38146945	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	220	810	0	ENST00000317025.8:c.3197dup	p.Asn1066LysfsTer14	p.N1066Kfs*14	ENST00000317025	NM_023034.1	1066	aac/aaAc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241924	72241924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs552625764		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	121	360	0	ENST00000357731.5:c.466G>A	p.Val156Ile	p.V156I	ENST00000357731	NM_173808.2	156	Gtc/Atc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210769	5210769	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770699501		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	209	790	0	ENST00000357368.4:c.5282C>T	p.Thr1761Met	p.T1761M	ENST00000357368	NM_002850.3	1761	aCg/aTg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497322	149497322	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs987244289		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	206	756	1	ENST00000261799.4:c.2996G>A	p.Arg999Gln	p.R999Q	ENST00000261799	NM_002609.3	999	cGa/cAa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647400	3647400	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763869769		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	163	740	4	ENST00000294008.3:c.1663G>A	p.Val555Met	p.V555M	ENST00000294008	NM_032444.2	555	Gtg/Atg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970916	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	244	637	0	ENST00000265081.6:c.1147_1148del	p.Lys383GlyfsTer20	p.K383Gfs*20	ENST00000265081	NM_002439.4	381	AAa/a																																																																															
MED12	9968	MSKCC	GRCh37	X	70338703	70338703	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	183	659	0	ENST00000374080.3:c.99G>T	p.Glu33Asp	p.E33D	ENST00000374080		33	gaG/gaT																																																																															
FANCA	2175	MSKCC	GRCh37	16	89825027	89825027	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773070418		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	196	678	2	ENST00000389301.3:c.2939C>T	p.Ala980Val	p.A980V	ENST00000389301	NM_000135.2	980	gCg/gTg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746161	162746161	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	72	237	0	ENST00000367921.3:c.2283+1G>A		p.X761_splice	ENST00000367921	NM_006182.2	761																																																																																
GATA2	2624	MSKCC	GRCh37	3	128204623	128204623	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	254	865	1	ENST00000341105.2:c.818del	p.Gly273AspfsTer53	p.G273Dfs*53	ENST00000341105	NM_032638.4	273	gGa/ga																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978495	70978495	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	107	457	0	ENST00000276594.2:c.1158del	p.Lys387SerfsTer90	p.K387Sfs*90	ENST00000276594	NM_024504.3	386	ggG/gg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780272	9780273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	180	752	0	ENST00000377346.4:c.1446dup	p.Val483ArgfsTer43	p.V483Rfs*43	ENST00000377346	NM_005026.3	481	cac/caCc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094386	27094388	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	147	620	0	ENST00000324856.7:c.3097_3099del	p.Glu1033del	p.E1033del	ENST00000324856	NM_006015.4	1032	GAG/-																																																																															
TET1	80312	MSKCC	GRCh37	10	70405011	70405011	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	155	555	0	ENST00000373644.4:c.2525T>C	p.Ile842Thr	p.I842T	ENST00000373644	NM_030625.2	842	aTc/aCc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137183	64137183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	189	688	0	ENST00000334205.4:c.1615G>A	p.Ala539Thr	p.A539T	ENST00000334205	NM_003942.2	539	Gcc/Acc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998937	100998937	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	165	667	0	ENST00000325455.5:c.865A>G	p.Met289Val	p.M289V	ENST00000325455	NM_001202474.3	289	Atg/Gtg																																																																															
CBL	867	MSKCC	GRCh37	11	119170319	119170319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	118	305	0	ENST00000264033.4:c.2549C>T	p.Ala850Val	p.A850V	ENST00000264033	NM_005188.3	850	gCt/gTt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18658371	18658371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	90	357	0	ENST00000266497.5:c.3176C>A	p.Ala1059Glu	p.A1059E	ENST00000266497		1059	gCa/gAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438045	49438045	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1331807800		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	262	775	1	ENST00000301067.7:c.5126G>A	p.Arg1709His	p.R1709H	ENST00000301067	NM_003482.3	1709	cGc/cAc																																																																															
AKT1	207	MSKCC	GRCh37	14	105240287	105240287	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs551254461		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	244	803	0	ENST00000349310.3:c.664C>T	p.Arg222Cys	p.R222C	ENST00000349310	NM_001014432.1	222	Cgc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827588	72827588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	201	651	0	ENST00000268489.5:c.8993G>A	p.Arg2998Gln	p.R2998Q	ENST00000268489	NM_006885.3	2998	cGg/cAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347020	89347020	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867065526		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	35	650	0	ENST00000301030.4:c.5930C>T	p.Ser1977Leu	p.S1977L	ENST00000301030	NM_001256183.1	1977	tCg/tTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231479	5231479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1377623190		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	239	890	0	ENST00000357368.4:c.1997C>T	p.Pro666Leu	p.P666L	ENST00000357368	NM_002850.3	666	cCg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228148	36228148	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867668452		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	228	850	0	ENST00000222270.7:c.7534G>A	p.Ala2512Thr	p.A2512T	ENST00000222270	NM_014727.1	2512	Gca/Aca																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967123	25967123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	114	531	0	ENST00000435504.4:c.2083C>T	p.Pro695Ser	p.P695S	ENST00000435504		695	Cca/Tca																																																																															
SOS1	6654	MSKCC	GRCh37	2	39222423	39222423	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	228	682	0	ENST00000402219.2:c.3187del	p.Ile1063LeufsTer25	p.I1063Lfs*25	ENST00000402219	NM_005633.3	1063	Att/tt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022395	31022395	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1162384519		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	79	339	0	ENST00000375687.4:c.1880C>T	p.Ala627Val	p.A627V	ENST00000375687	NM_015338.5	627	gCg/gTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106164896	106164896	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	38	516	0	ENST00000380013.4:c.3764A>G	p.Tyr1255Cys	p.Y1255C	ENST00000380013	NM_001127208.2	1255	tAc/tGc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541216	187541216	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	126	387	0	ENST00000441802.2:c.6524T>C	p.Met2175Thr	p.M2175T	ENST00000441802	NM_005245.3	2175	aTg/aCg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629124	187629125	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	161	576	0	ENST00000441802.2:c.1857dup	p.Asn620GlnfsTer56	p.N620Qfs*56	ENST00000441802	NM_005245.3	619	-/C																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945803	38945803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	49	213	0	ENST00000357387.3:c.4423C>A	p.Leu1475Ile	p.L1475I	ENST00000357387	NM_152756.3	1475	Ctt/Att																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188970	32188970	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1227775066		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	250	951	0	ENST00000375023.3:c.584T>C	p.Val195Ala	p.V195A	ENST00000375023	NM_004557.3	195	gTc/gCc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70967546	70967547	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	142	647	0	ENST00000276594.2:c.1476_1477del	p.Tyr493LeufsTer3	p.Y493Lfs*3	ENST00000276594	NM_024504.3	492	gtGTat/gtat																																																																															
CD274	29126	MSKCC	GRCh37	9	5466786	5466787	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	49	136	0	ENST00000381577.3:c.813dup	p.Cys272MetfsTer13	p.C272Mfs*13	ENST00000381577	NM_014143.3	269	-/A																																																																															
TEK	7010	MSKCC	GRCh37	9	27212816	27212816	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199701926		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	272	906	0	ENST00000380036.4:c.2798C>T	p.Ala933Val	p.A933V	ENST00000380036	NM_000459.3	933	gCg/gTg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37034003	37034003	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	146	408	0	ENST00000358127.4:c.26C>A	p.Thr9Asn	p.T9N	ENST00000358127	NM_001280556.1	9	aCt/aAt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53246350	53246350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	277	699	1	ENST00000375401.3:c.632G>A	p.Arg211Gln	p.R211Q	ENST00000375401	NM_004187.3	211	cGg/cAg																																																																															
MED12	9968	MSKCC	GRCh37	X	70345347	70345347	+	splice_donor_variant	Splice_Site	DEL	T	T	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	203	750	0	ENST00000374080.3:c.2371+2del		p.X791_splice	ENST00000374080		791																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0044535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	55	155	1	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
CDH1	999	MSKCC	GRCh37	16	68772290	68772290	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	217	529	1	ENST00000261769.5:c.139G>T	p.Glu47Ter	p.E47*	ENST00000261769	NM_004360.3	47	Gag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258928	16258928	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	168	486	0	ENST00000375759.3:c.6198del	p.Lys2066AsnfsTer20	p.K2066Nfs*20	ENST00000375759	NM_015001.2	2065	Aaa/aa																																																																															
CDC42	998	MSKCC	GRCh37	1	22417937	22417937	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	47	150	0	ENST00000344548.3:c.503T>C	p.Val168Ala	p.V168A	ENST00000344548	NM_001039802.1	168	gTa/gCa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101267	27101268	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	125	448	0	ENST00000324856.7:c.4555dup	p.Gln1519ProfsTer13	p.Q1519Pfs*13	ENST00000324856	NM_006015.4	1517	gcc/gCcc																																																																															
STK40	83931	MSKCC	GRCh37	1	36823851	36823851	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772996133		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	95	294	1	ENST00000373129.3:c.331G>A	p.Gly111Ser	p.G111S	ENST00000373129	NM_032017.1	111	Ggc/Agc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115276644	115276644	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	90	377	0	ENST00000438362.2:c.815G>T	p.Gly272Val	p.G272V	ENST00000438362	NM_001242891.1	272	gGc/gTc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246498701	246498701	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771269963		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	98	380	1	ENST00000388985.4:c.304G>A	p.Val102Ile	p.V102I	ENST00000388985		102	Gtt/Att																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63845529	63845529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771981107		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	67	244	0	ENST00000279873.7:c.1268G>A	p.Arg423Gln	p.R423Q	ENST00000279873	NM_032199.2	423	cGg/cAg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851143	63851143	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	124	449	0	ENST00000279873.7:c.1921G>T	p.Ala641Ser	p.A641S	ENST00000279873	NM_032199.2	641	Gcg/Tcg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710595	114710597	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs754968616		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	254	382	0	ENST00000543371.1:c.85_87del	p.Glu29del	p.E29del	ENST00000543371	NM_001198531.1	27	cAGGag/cag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138915	64138915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	62	170	0	ENST00000334205.4:c.2287del	p.Arg763AlafsTer21	p.R763Afs*21	ENST00000334205	NM_003942.2	761	gCc/gc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589662	69589662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	22	86	0	ENST00000168712.1:c.191C>A	p.Pro64His	p.P64H	ENST00000168712	NM_002007.2	64	cCc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425623	49425623	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs751148266		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	155	519	0	ENST00000301067.7:c.12865C>A	p.Leu4289Ile	p.L4289I	ENST00000301067	NM_003482.3	4289	Ctc/Atc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434005	49434005	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	140	558	0	ENST00000301067.7:c.7548del	p.Asn2517IlefsTer26	p.N2517Ifs*26	ENST00000301067	NM_003482.3	2516	ccC/cc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56490962	56490962	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	39	443	1	ENST00000267101.3:c.2413del	p.Ala805HisfsTer95	p.A805Hfs*95	ENST00000267101	NM_001982.3	803	cGg/cg																																																																															
MSI1	4440	MSKCC	GRCh37	12	120785306	120785306	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	114	444	0	ENST00000257552.2:c.802A>G	p.Thr268Ala	p.T268A	ENST00000257552	NM_002442.3	268	Act/Gct																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43707822	43707822	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs746063219		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	142	541	1	ENST00000382044.4:c.5059C>T	p.Arg1687Ter	p.R1687*	ENST00000382044	NM_001141980.1	1687	Cga/Tga																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	169	609	1	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																															
B2M	567	MSKCC	GRCh37	15	45003813	45003813	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	91	304	0	ENST00000558401.1:c.67+2T>C		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
B2M	567	MSKCC	GRCh37	15	45007688	45007688	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	72	251	0	ENST00000558401.1:c.135C>A	p.Cys45Ter	p.C45*	ENST00000558401	NM_004048.2	45	tgC/tgA																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343582	343582	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	182	592	0	ENST00000262320.3:c.2092del	p.His698ThrfsTer7	p.H698Tfs*7	ENST00000262320	NM_003502.3	698	Cac/ac																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	187	532	3	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226264	2226264	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	111	529	0	ENST00000326181.6:c.1879-2A>G		p.X627_splice	ENST00000326181	NM_032271.2	627																																																																																
PDPK1	5170	MSKCC	GRCh37	16	2647209	2647209	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	124	416	0	ENST00000342085.4:c.1487G>T	p.Gly496Val	p.G496V	ENST00000342085	NM_002613.4	496	gGt/gTt																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370173	40370173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	181	562	0	ENST00000293328.3:c.1165C>T	p.Arg389Cys	p.R389C	ENST00000293328	NM_012448.3	389	Cgc/Tgc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	253	483	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	167	566	0	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554218	63554218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	117	441	0	ENST00000307078.5:c.521C>T	p.Ala174Val	p.A174V	ENST00000307078	NM_004655.3	174	gCg/gTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272337	15272337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs776990686		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	170	552	6	ENST00000263388.2:c.6102del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2034	ccC/cc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281200	15281200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	123	553	1	ENST00000263388.2:c.5056G>A	p.Val1686Met	p.V1686M	ENST00000263388	NM_000435.2	1686	Gtg/Atg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366174	15366174	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	135	493	0	ENST00000263377.2:c.1981C>G	p.Pro661Ala	p.P661A	ENST00000263377	NM_058243.2	661	Ccg/Gcg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953983	17953983	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	122	477	0	ENST00000458235.1:c.421-2A>G		p.X141_splice	ENST00000458235	NM_000215.3	141																																																																																
ERF	2077	MSKCC	GRCh37	19	42753555	42753555	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762723221		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	203	547	0	ENST00000222329.4:c.709C>T	p.Arg237Trp	p.R237W	ENST00000222329	NM_006494.2	237	Cgg/Tgg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082313	16082314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs780080562		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	125	567	3	ENST00000281043.3:c.134dup	p.Glu47GlyfsTer8	p.E47Gfs*8	ENST00000281043	NM_005378.4	43	acc/aCcc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030648	48030648	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	48	335	0	ENST00000234420.5:c.3263del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1088	Ttc/tc																																																																															
BARD1	580	MSKCC	GRCh37	2	215646085	215646085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	79	371	2	ENST00000260947.4:c.513del	p.Asp172MetfsTer40	p.D172Mfs*40	ENST00000260947	NM_000465.2	171	aaA/aa																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961367	54961367	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	94	311	0	ENST00000312783.6:c.265T>C	p.Ser89Pro	p.S89P	ENST00000312783	NM_198436.1	89	Tcc/Ccc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	146	290	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	66	303	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	45	213	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185198192	185198192	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs552226638		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	138	378	1	ENST00000265026.3:c.2674A>G	p.Thr892Ala	p.T892A	ENST00000265026	NM_004721.4	892	Acg/Gcg																																																																															
KIT	3815	MSKCC	GRCh37	4	55603385	55603385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	76	258	0	ENST00000288135.5:c.2741G>T	p.Arg914Ile	p.R914I	ENST00000288135	NM_000222.2	914	aGa/aTa																																																																															
TET2	54790	MSKCC	GRCh37	4	106197563	106197563	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745668941		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	76	272	0	ENST00000380013.4:c.5896C>T	p.Arg1966Cys	p.R1966C	ENST00000380013	NM_001127208.2	1966	Cgt/Tgt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	235	433	7	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323362	31323363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	51	255	0	ENST00000412585.2:c.626dup	p.Thr211AspfsTer10	p.T211Dfs*10	ENST00000412585	NM_005514.6	209	cca/ccCa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508116	106508116	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	37	184	0	ENST00000359195.3:c.110T>G	p.Leu37Arg	p.L37R	ENST00000359195	NM_002649.2	37	cTc/cGc																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	134	584	0	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	51	297	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
BRAF	673	MSKCC	GRCh37	7	140494247	140494247	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730880418		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	170	608	0	ENST00000288602.6:c.1001C>T	p.Pro334Leu	p.P334L	ENST00000288602	NM_004333.4	334	cCg/cTg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117859801	117859801	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	67	203	0	ENST00000297338.2:c.1834A>G	p.Thr612Ala	p.T612A	ENST00000297338	NM_006265.2	612	Aca/Gca																																																																															
TEK	7010	MSKCC	GRCh37	9	27185545	27185545	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	154	433	1	ENST00000380036.4:c.1250del	p.Pro417LeufsTer10	p.P417Lfs*10	ENST00000380036	NM_000459.3	415	ctC/ct																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98238357	98238357	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146616780		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	130	408	1	ENST00000331920.6:c.1687G>A	p.Ala563Thr	p.A563T	ENST00000331920	NM_000264.3	563	Gcg/Acg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405177	139405177	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1248255443		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	150	533	0	ENST00000277541.6:c.2668G>A	p.Gly890Ser	p.G890S	ENST00000277541	NM_017617.3	890	Ggc/Agc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	125	242	1	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0044589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	856	628	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
XPO1	7514	MSKCC	GRCh37	2	61724121	61724121	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	51	291	0	ENST00000401558.2:c.781C>T	p.Arg261Ter	p.R261*	ENST00000401558	NM_003400.3	261	Cga/Tga																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751225	57751225	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1358636691		P-0044589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	138	382	0	ENST00000274289.3:c.1642G>A	p.Ala548Thr	p.A548T	ENST00000274289	NM_006622.3	548	Gca/Aca																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256493	115256493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	230	506	0	ENST00000369535.4:c.218G>A	p.Arg73Lys	p.R73K	ENST00000369535	NM_002524.4	73	aGg/aAg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376896	118376896	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	296	345	0	ENST00000534358.1:c.10289G>C	p.Cys3430Ser	p.C3430S	ENST00000534358	NM_005933.3	3430	tGt/tCt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724484	43724484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	327	751	0	ENST00000382044.4:c.3583G>A	p.Gly1195Arg	p.G1195R	ENST00000382044	NM_001141980.1	1195	Gga/Aga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214560	5214579	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCAAGGCTCACCCGTGACT	TCCAAGGCTCACCCGTGACT	-			P-0044589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	247	530	0	ENST00000357368.4:c.4487_4494+12del		p.X1496_splice	ENST00000357368	NM_002850.3	1496																																																																																
BRD4	23476	MSKCC	GRCh37	19	15349658	15349658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	610	684	3	ENST00000263377.2:c.3916G>A	p.Ala1306Thr	p.A1306T	ENST00000263377	NM_058243.2	1306	Gcc/Acc																																																																															
NF2	4771	MSKCC	GRCh37	22	30032805	30032805	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs780872661		P-0044589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	186	431	0	ENST00000338641.4:c.180G>C	p.Trp60Cys	p.W60C	ENST00000338641	NM_000268.3	60	tgG/tgC																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467852	66467865	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGTTGCAGTCCC	GCTGTTGCAGTCCC	-			P-0044589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	89	328	0	ENST00000273854.3:c.404_417del	p.Arg135ProfsTer9	p.R135Pfs*9	ENST00000273854	NM_004439.5	135	cGGGACTGCAACAGC/c																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31511172	31511172	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1286	250	591	0	ENST00000344624.3:c.1402C>G	p.Pro468Ala	p.P468A	ENST00000344624		468	Cct/Gct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	101	289	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0044655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	170	700	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0044736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	228	573	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578410	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCGCCT	CAGCGCCT	-			P-0044736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	72	567	0	ENST00000269305.4:c.520_527del	p.Arg174ProfsTer4	p.R174Pfs*4	ENST00000269305	NM_001126112.2	174	AGGCGCTGc/c																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	107	316	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501195		P-0044738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	62	610	0	ENST00000269305.4:c.313G>A	p.Gly105Ser	p.G105S	ENST00000269305	NM_001126112.2	105	Ggc/Agc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941290	71941290	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	58	611	0	ENST00000298229.2:c.1065C>G	p.Asp355Glu	p.D355E	ENST00000298229	NM_001567.3	355	gaC/gaG																																																																															
BLM	641	MSKCC	GRCh37	15	91292806	91292806	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	47	371	0	ENST00000355112.3:c.308G>T	p.Gly103Val	p.G103V	ENST00000355112	NM_000057.2	103	gGa/gTa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78866543	78866543	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	66	455	0	ENST00000306801.3:c.2116A>T	p.Thr706Ser	p.T706S	ENST00000306801	NM_020761.2	706	Acc/Tcc																																																																															
CIC	23152	MSKCC	GRCh37	19	42794728	42794728	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	69	612	0	ENST00000575354.2:c.1808C>G	p.Pro603Arg	p.P603R	ENST00000575354	NM_015125.3	603	cCc/cGc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47139517	47139517	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	62	406	0	ENST00000409792.3:c.5070del	p.Gly1691GlufsTer14	p.G1691Efs*14	ENST00000409792	NM_014159.6	1690	ggA/gg																																																																															
ATR	545	MSKCC	GRCh37	3	142172019	142172019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	35	416	0	ENST00000350721.4:c.7712G>C	p.Gly2571Ala	p.G2571A	ENST00000350721	NM_001184.3	2571	gGg/gCg																																																																															
ATRX	546	MSKCC	GRCh37	X	76938356	76938356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	47	456	0	ENST00000373344.5:c.2392G>C	p.Ala798Pro	p.A798P	ENST00000373344	NM_000489.3	798	Gct/Cct																																																																															
MGA	23269	MSKCC	GRCh37	15	41989159	41989159	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	39	435	0	ENST00000219905.7:c.1951C>G	p.Pro651Ala	p.P651A	ENST00000219905	NM_001164273.1	651	Cca/Gca																																																																															
MGA	23269	MSKCC	GRCh37	15	41989155	41989156	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	37	436	0	ENST00000219905.7:c.1950dup	p.Pro651SerfsTer6	p.P651Sfs*6	ENST00000219905	NM_001164273.1	649	-/T																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs28934577		P-0044744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	225	700	0	ENST00000269305.4:c.770T>G	p.Leu257Arg	p.L257R	ENST00000269305	NM_001126112.2	257	cTg/cGg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543901	212543901	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	97	400	0	ENST00000342788.4:c.1498G>T	p.Gly500Ter	p.G500*	ENST00000342788	NM_005235.2	500	Gga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911545	114911545	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	166	446	0	ENST00000543371.1:c.1063A>C	p.Asn355His	p.N355H	ENST00000543371	NM_001198531.1	355	Aat/Cat																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885293	111885293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	198	639	0	ENST00000341259.2:c.1181G>A	p.Ser394Asn	p.S394N	ENST00000341259	NM_005475.2	394	aGc/aAc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41234426	41234426	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs949793708		P-0044744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	90	507	0	ENST00000357654.3:c.4352A>G	p.Glu1451Gly	p.E1451G	ENST00000357654	NM_007294.3	1451	gAa/gGa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812210	212812210	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	63	373	0	ENST00000342788.4:c.366C>G	p.Asn122Lys	p.N122K	ENST00000342788	NM_005235.2	122	aaC/aaG																																																																															
APC	324	MSKCC	GRCh37	5	112173839	112173839	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0044744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	223	453	0	ENST00000257430.4:c.2548A>T	p.Arg850Ter	p.R850*	ENST00000257430	NM_000038.5	850	Aga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111549	8111550	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	194	615	0	ENST00000346208.3:c.1037dup	p.Leu347AlafsTer5	p.L347Afs*5	ENST00000346208		345	-/A																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255141	16255142	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0044746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	44	501	1	ENST00000375759.3:c.2417_2418dup	p.Arg807AspfsTer3	p.R807Dfs*3	ENST00000375759	NM_015001.2	802	-/GA																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118902	115118903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	107	360	0	ENST00000257566.3:c.438dup	p.Ala147SerfsTer13	p.A147Sfs*13	ENST00000257566	NM_016569.3	146	-/A																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024017	31024017	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1291218446		P-0044746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	49	661	0	ENST00000375687.4:c.3502A>C	p.Ser1168Arg	p.S1168R	ENST00000375687	NM_015338.5	1168	Agt/Cgt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115947	8115948	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	202	371	1	ENST00000346208.3:c.1295dup	p.His433ThrfsTer74	p.H433Tfs*74	ENST00000346208		431	-/C																																																																															
FH	2271	MSKCC	GRCh37	1	241682931	241682931	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659347		P-0044751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	199	483	0	ENST00000366560.3:c.92C>T	p.Ala31Val	p.A31V	ENST00000366560	NM_000143.3	31	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578245	7578245	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	293	639	0	ENST00000269305.4:c.604del	p.Arg202ValfsTer45	p.R202Vfs*45	ENST00000269305	NM_001126112.2	202	Cgt/gt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0044755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	58	490	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581178	48581179	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0044755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	50	294	0	ENST00000342988.3:c.485_486dup	p.Val163MetfsTer40	p.V163Mfs*40	ENST00000342988	NM_005359.5	161	gaa/gaATa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420460	49420460	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	558	557	3	ENST00000301067.7:c.15289C>T	p.Arg5097Ter	p.R5097*	ENST00000301067	NM_003482.3	5097	Cga/Tga																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933687	39933687	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0044768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	621	543	2	ENST00000378444.4:c.912T>G	p.Tyr304Ter	p.Y304*	ENST00000378444	NM_001123385.1	304	taT/taG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0044783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	81	271	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786204864		P-0044783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	38	285	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25468187	25468187	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	186	544	0	ENST00000264709.3:c.1489T>C	p.Cys497Arg	p.C497R	ENST00000264709	NM_175629.2	497	Tgt/Cgt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56176992	56176993	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0044783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	128	261	0	ENST00000399503.3:c.2263_2264del	p.Leu755TrpfsTer8	p.L755Wfs*8	ENST00000399503	NM_005921.1	754	ctTCtt/cttt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453145	140453146	+	missense_variant	Missense_Mutation	DNP	AG	AG	GA	rs121913368		P-0044915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	318	371	1	ENST00000288602.6:c.1789_1790delinsTC	p.Leu597Ser	p.L597S	ENST00000288602	NM_004333.4	597	CTa/TCa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65307003	65307003	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	48	363	0	ENST00000342505.4:c.2574A>C	p.Glu858Asp	p.E858D	ENST00000342505	NM_002227.2	858	gaA/gaC																																																																															
TSC2	7249	MSKCC	GRCh37	16	2112555	2112555	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	80	895	0	ENST00000219476.3:c.1315G>C	p.Asp439His	p.D439H	ENST00000219476	NM_000548.3	439	Gac/Cac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3828801	3828801	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	249	603	0	ENST00000262367.5:c.1841C>G	p.Pro614Arg	p.P614R	ENST00000262367	NM_004380.2	614	cCa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577541	7577544	+	frameshift_variant	Frame_Shift_Del	DEL	TTCA	TTCA	-			P-0044915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	250	769	0	ENST00000269305.4:c.737_740del	p.Met246ThrfsTer98	p.M246Tfs*98	ENST00000269305	NM_001126112.2	246	aTGAAc/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	172	455	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	125	458	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851286	156851286	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745776726		P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	114	773	1	ENST00000524377.1:c.2243G>A	p.Arg748Gln	p.R748Q	ENST00000524377	NM_002529.3	748	cGg/cAg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	172	471	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
EP300	2033	MSKCC	GRCh37	22	41548243	41548243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775368605		P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	106	300	0	ENST00000263253.7:c.3031G>A	p.Glu1011Lys	p.E1011K	ENST00000263253	NM_001429.3	1011	Gaa/Aaa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949076	44949076	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	75	246	1	ENST00000377967.4:c.3637C>T	p.Arg1213Ter	p.R1213*	ENST00000377967	NM_021140.2	1213	Cga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056964	180056964	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	116	826	2	ENST00000261937.6:c.655C>A	p.Pro219Thr	p.P219T	ENST00000261937	NM_182925.4	219	Ccc/Acc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593405	48593405	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519962		P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	12	343	0	ENST00000342988.3:c.1156G>A	p.Gly386Ser	p.G386S	ENST00000342988	NM_005359.5	386	Ggt/Agt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49423020	49423020	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	36	688	0	ENST00000301067.7:c.14076-1G>T		p.X4692_splice	ENST00000301067	NM_003482.3	4692																																																																																
RNF43	54894	MSKCC	GRCh37	17	56492800	56492800	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	101	552	0	ENST00000407977.2:c.139A>T	p.Ile47Phe	p.I47F	ENST00000407977		47	Att/Ttt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936096	+	missense_variant	Missense_Mutation	DNP	AG	AG	GT			P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	21	638	0	ENST00000263967.3:c.1637_1638delinsGT	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAG/cGT																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249341	110249341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	398	1067	3	ENST00000374672.4:c.1232C>A	p.Ser411Tyr	p.S411Y	ENST00000374672	NM_004235.4	411	tCc/tAc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942658	44942768	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTATTTGTAGCAGAGTTTCACTTTTGATGTGTTATTTTATTGCAGGTGGAAGTTGCAGCTACATGAGCTGACTAAACTTCCTGCTTTTGTGCGTGTCGTATCAGCAGGA	AGGTATTTGTAGCAGAGTTTCACTTTTGATGTGTTATTTTATTGCAGGTGGAAGTTGCAGCTACATGAGCTGACTAAACTTCCTGCTTTTGTGCGTGTCGTATCAGCAGGA	-			P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	10	130	0	ENST00000377967.4:c.3285-46_3349del		p.X1095_splice	ENST00000377967	NM_021140.2	1095																																																																																
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0044991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	28	280	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0044991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	16	330	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311619	15311621	+	inframe_deletion	In_Frame_Del	DEL	AGC	AGC	-	rs772632118		P-0044991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	11	117	1	ENST00000263388.2:c.96_98del	p.Leu33del	p.L33del	ENST00000263388	NM_000435.2	32	ctGCTa/cta																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	43	475	7	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	44	831	3	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	30	419	1	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	34	347	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	65	348	3	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101099	27101099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	51	768	1	ENST00000324856.7:c.4381C>T	p.Arg1461Ter	p.R1461*	ENST00000324856	NM_006015.4	1461	Cga/Tga																																																																															
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	43	255	2	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370841	55370841	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759612481		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	42	632	0	ENST00000297316.4:c.143C>T	p.Ala48Val	p.A48V	ENST00000297316	NM_022454.3	48	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	66	380	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222934	5222934	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768350891		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	94	762	0	ENST00000357368.4:c.2869G>A	p.Glu957Lys	p.E957K	ENST00000357368	NM_002850.3	957	Gag/Aag																																																																															
MET	4233	MSKCC	GRCh37	7	116339744	116339746	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-	rs764811491		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	57	368	0	ENST00000397752.3:c.611_613del	p.Ser204del	p.S204del	ENST00000397752	NM_000245.2	202	aaTTCt/aat																																																																															
BARD1	580	MSKCC	GRCh37	2	215646085	215646085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	54	568	1	ENST00000260947.4:c.513del	p.Asp172MetfsTer40	p.D172Mfs*40	ENST00000260947	NM_000465.2	171	aaA/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	82	490	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	123	624	5	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276860	15276861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs753725730		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	46	692	3	ENST00000263388.2:c.5404dup	p.Ala1802GlyfsTer8	p.A1802Gfs*8	ENST00000263388	NM_000435.2	1802	gct/gGct																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319959	8319959	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745582718		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	18	220	0	ENST00000356435.5:c.5542G>A	p.Val1848Ile	p.V1848I	ENST00000356435		1848	Gtt/Att																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55130043	55130043	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774431464		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	101	646	2	ENST00000257290.5:c.577G>A	p.Val193Ile	p.V193I	ENST00000257290	NM_006206.4	193	Gtc/Atc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1297203260		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	31	580	0	ENST00000245479.2:c.916del	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
APC	324	MSKCC	GRCh37	5	112164664	112164664	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	44	238	0	ENST00000257430.4:c.1742del	p.Lys581ArgfsTer9	p.K581Rfs*9	ENST00000257430	NM_000038.5	580	Aaa/aa																																																																															
EP300	2033	MSKCC	GRCh37	22	41573977	41573977	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201569846		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	49	666	2	ENST00000263253.7:c.6262C>T	p.Arg2088Trp	p.R2088W	ENST00000263253	NM_001429.3	2088	Cgg/Tgg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	61	861	5	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922974	44922974	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs973676174		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	41	642	0	ENST00000377967.4:c.1835G>A	p.Arg612Gln	p.R612Q	ENST00000377967	NM_021140.2	612	cGa/cAa																																																																															
ERF	2077	MSKCC	GRCh37	19	42752786	42752786	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762382429		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	54	969	1	ENST00000222329.4:c.1478G>A	p.Arg493His	p.R493H	ENST00000222329	NM_006494.2	493	cGc/cAc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163855	32163855	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	93	559	0	ENST00000375023.3:c.5371del	p.Ala1791GlnfsTer11	p.A1791Qfs*11	ENST00000375023	NM_004557.3	1791	Gca/ca																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132515	11132515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	105	828	0	ENST00000344626.4:c.2731G>A	p.Gly911Ser	p.G911S	ENST00000344626	NM_003072.3	911	Ggc/Agc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15383885	15383885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	31	496	0	ENST00000263377.2:c.26C>T	p.Thr9Met	p.T9M	ENST00000263377	NM_058243.2	9	aCg/aTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29667607	29667607	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781428		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	41	565	1	ENST00000358273.4:c.7006G>A	p.Ala2336Thr	p.A2336T	ENST00000358273	NM_001042492.2	2336	Gca/Aca																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39322556	39322556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761415462		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	47	430	0	ENST00000373001.3:c.436G>A	p.Ala146Thr	p.A146T	ENST00000373001	NM_022157.3	146	Gca/Aca																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15973765	15973765	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	52	458	0	ENST00000268712.3:c.4227del	p.Pro1410LeufsTer18	p.P1410Lfs*18	ENST00000268712	NM_006311.3	1409	ggG/gg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102199631	102199631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	25	275	0	ENST00000263464.3:c.1036C>A	p.Leu346Ile	p.L346I	ENST00000263464	NM_001165.4	346	Cta/Ata																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs112445441		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	10	398	0	ENST00000256078.4:c.38G>C	p.Gly13Ala	p.G13A	ENST00000256078	NM_033360.2	13	gGc/gCc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112302	115112302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	12	214	1	ENST00000257566.3:c.1438G>A	p.Ala480Thr	p.A480T	ENST00000257566	NM_016569.3	480	Gcg/Acg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348051	89348051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	63	1030	1	ENST00000301030.4:c.4899G>T	p.Lys1633Asn	p.K1633N	ENST00000301030	NM_001256183.1	1633	aaG/aaT																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805913	89805913	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	44	727	1	ENST00000389301.3:c.3983C>A	p.Thr1328Asn	p.T1328N	ENST00000389301	NM_000135.2	1328	aCc/aAc																																																																															
CALR	811	MSKCC	GRCh37	19	13051678	13051678	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1026947469		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	75	562	0	ENST00000316448.5:c.937G>A	p.Val313Met	p.V313M	ENST00000316448	NM_004343.3	313	Gtg/Atg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313353	30313353	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	33	597	0	ENST00000262643.3:c.953G>T	p.Gly318Val	p.G318V	ENST00000262643	NM_001238.2	318	gGg/gTg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715991	52715991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	98	688	1	ENST00000322088.6:c.556G>T	p.Ala186Ser	p.A186S	ENST00000322088	NM_014225.5	186	Gcc/Tcc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542843	187542843	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	27	416	0	ENST00000441802.2:c.4897T>C	p.Tyr1633His	p.Y1633H	ENST00000441802	NM_005245.3	1633	Tat/Cat																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970922	79970922	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs71539687		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	119	645	0	ENST00000265081.6:c.1148A>G	p.Lys383Arg	p.K383R	ENST00000265081	NM_002439.4	383	aAg/aGg																																																																															
APC	324	MSKCC	GRCh37	5	112174965	112174965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	30	214	1	ENST00000257430.4:c.3674C>T	p.Ala1225Val	p.A1225V	ENST00000257430	NM_000038.5	1225	gCc/gTc																																																																															
SESN1	27244	MSKCC	GRCh37	6	109415033	109415033	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	35	522	0	ENST00000436639.2:c.244A>T	p.Arg82Ter	p.R82*	ENST00000436639	NM_014454.2	82	Aga/Tga																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509841	106509841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	84	713	0	ENST00000359195.3:c.1835C>T	p.Ala612Val	p.A612V	ENST00000359195	NM_002649.2	612	gCc/gTc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38153335	38153338	+	frameshift_variant	Frame_Shift_Del	DEL	CAAA	CAAA	-			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	33	570	0	ENST00000317025.8:c.2891_2894del	p.Val964GlyfsTer22	p.V964Gfs*22	ENST00000317025	NM_023034.1	964	gTTTGg/gg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141566347	141566347	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	26	404	0	ENST00000220592.5:c.1065del	p.Lys355AsnfsTer2	p.K355Nfs*2	ENST00000220592	NM_012154.3	355	aaA/aa																																																																															
APC	324	MSKCC	GRCh37	5	112164566	112164566	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	18	223	0	ENST00000257430.4:c.1643del	p.Leu548Ter	p.L548*	ENST00000257430	NM_000038.5	547	gTt/gt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982453	25982453	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	166	350	0	ENST00000435504.4:c.837del	p.Asn280IlefsTer7	p.N280Ifs*7	ENST00000435504		279	gtT/gt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0046166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	197	225	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	145	507	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	102	379	0	ENST00000250448.2:c.798C>G	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttG																																																																															
RAB35	11021	MSKCC	GRCh37	12	120536697	120536697	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768711168		P-0046166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	157	630	0	ENST00000229340.5:c.395C>T	p.Thr132Met	p.T132M	ENST00000229340	NM_006861.6	132	aCg/aTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180556	56180562	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAATG	AAGAATG	-			P-0046166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	124	208	0	ENST00000399503.3:c.3886_3892del	p.Arg1296Ter	p.R1296*	ENST00000399503	NM_005921.1	1295	atAAGAATG/at																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610564	10610564	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	75	1206	0	ENST00000171111.5:c.146A>G	p.Asn49Ser	p.N49S	ENST00000171111	NM_203500.1	49	aAc/aGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0046741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	49	273	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126756	5126756	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	63	329	1	ENST00000381652.3:c.3364C>T	p.Arg1122Ter	p.R1122*	ENST00000381652	NM_004972.3	1122	Cga/Tga																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069964	5069964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	45	219	0	ENST00000381652.3:c.1553C>T	p.Ser518Phe	p.S518F	ENST00000381652	NM_004972.3	518	tCt/tTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057727	27057727	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	168	635	2	ENST00000324856.7:c.1435C>T	p.Gln479Ter	p.Q479*	ENST00000324856	NM_006015.4	479	Cag/Tag																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006042	22006042	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746854404		P-0046741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	165	798	1	ENST00000276925.6:c.361G>A	p.Glu121Lys	p.E121K	ENST00000276925	NM_004936.3	121	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717676	89717676	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	76	353	0	ENST00000371953.3:c.703del	p.Glu235LysfsTer21	p.E235Kfs*21	ENST00000371953	NM_000314.4	234	cGg/cg																																																																															
BTK	695	MSKCC	GRCh37	X	100630190	100630190	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs128620185		P-0046741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	89	372	0	ENST00000308731.7:c.83G>A	p.Arg28His	p.R28H	ENST00000308731	NM_000061.2	28	cGc/cAc																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14317322	14317322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	54	328	0	ENST00000256196.4:c.188G>A	p.Arg63Gln	p.R63Q	ENST00000256196		63	cGg/cAg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259004	16259004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	106	416	0	ENST00000375759.3:c.6269C>T	p.Ser2090Phe	p.S2090F	ENST00000375759	NM_015001.2	2090	tCt/tTt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243776993	243776993	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	90	399	0	ENST00000263826.5:c.676G>C	p.Glu226Gln	p.E226Q	ENST00000263826	NM_005465.4	226	Gaa/Caa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114917819	114917819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	85	363	2	ENST00000543371.1:c.1309G>A	p.Glu437Lys	p.E437K	ENST00000543371	NM_001198531.1	437	Gag/Aag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939887	71939887	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1292522547		P-0046741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	215	777	1	ENST00000298229.2:c.514G>A	p.Glu172Lys	p.E172K	ENST00000298229	NM_001567.3	172	Gag/Aag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46211602	46211602	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766610841		P-0046741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	36	209	1	ENST00000334344.6:c.568G>A	p.Val190Ile	p.V190I	ENST00000334344	NM_152641.2	190	Gtc/Atc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972431	32972431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	107	423	0	ENST00000380152.3:c.9781G>A	p.Asp3261Asn	p.D3261N	ENST00000380152		3261	Gac/Aac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992468	72992468	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0046741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	168	644	0	ENST00000268489.5:c.1577C>G	p.Ser526Ter	p.S526*	ENST00000268489	NM_006885.3	526	tCa/tGa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265715	10265715	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	107	329	0	ENST00000340748.4:c.1462C>G	p.Leu488Val	p.L488V	ENST00000340748		488	Ctg/Gtg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212284	36212284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	165	686	1	ENST00000222270.7:c.2035C>T	p.Pro679Ser	p.P679S	ENST00000222270	NM_014727.1	679	Cca/Tca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224142	36224142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	158	670	0	ENST00000222270.7:c.6692C>A	p.Ser2231Tyr	p.S2231Y	ENST00000222270	NM_014727.1	2231	tCc/tAc																																																																															
AXL	558	MSKCC	GRCh37	19	41758297	41758297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	171	538	0	ENST00000301178.4:c.1753G>A	p.Glu585Lys	p.E585K	ENST00000301178	NM_021913.4	585	Gaa/Aaa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47701340	47702202	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGCATGTGATACTGATGAGGAAAGAAAGCCAAACTGTCTTACGGTCAGTTCGTACAATATACCAGGCCTTGATGGTCACATTTCAACTTGCTACCTTTTTGCTTACATTTTTCTTATGGTGATTTTGAGGTGTCATTCTGGTTTCTCAGATACTTAAAATATAGGAAAAGGTGTGTCTTAAAATTGAGAGAATGTCTTGGATAAGCAGCTGTGTAGTTTTATATTTTGCTGATAAGGGAAGGTACTCTATTTTTGTTTTTTGTGTGTTTTTGTTTGTTTGTTTTTGAGACAGAATTGCCCAGGCTGGAGTGCTGTGGCGCAATCTCAGCTTACTGCAACTTCCACCTTCTGGGTTCATGCAATTCTGGTGCCTCAGCCTCCCAAGTATCTGGGTTTACAGACATGCACCACCATACCTGGCTAATTTTTGTATTTTTGGTAGAGATGGGGTTTCGCCGTGTTACCAGGCTGGTCTTGAATTCCTGGCCCCATGTGATCCCCCGGCCTCATGCGATCTGCCCGCCTCAGCCTCCCTAAGTGCTGGGATTATAGGCGTGAGCCACCCAACCCAGCCAGTACTCTGTTTTTGATAGCTATTCACAATGGGAAAGGATGTAGCAACACATTTTAACCCTATGTTGAGTTTTAGGTGGGTTCCTTTGAAATTTTGTTAAGGCTAACTTTTGTTAATTTTTTTAAAAAAGTGTAAATTAGGAAATGGGTTTTGAATTCCCAAATGGGGGGATTAAATGTATTTTTACGGCTTATATCTGTTTATTATTCAGTATTCCTGTGTACATTTTCTGTTTTTATTTTTATACAGGCTATGTAGAACCAATGCAGACACTCAATGATGTGTTAG	CTGCATGTGATACTGATGAGGAAAGAAAGCCAAACTGTCTTACGGTCAGTTCGTACAATATACCAGGCCTTGATGGTCACATTTCAACTTGCTACCTTTTTGCTTACATTTTTCTTATGGTGATTTTGAGGTGTCATTCTGGTTTCTCAGATACTTAAAATATAGGAAAAGGTGTGTCTTAAAATTGAGAGAATGTCTTGGATAAGCAGCTGTGTAGTTTTATATTTTGCTGATAAGGGAAGGTACTCTATTTTTGTTTTTTGTGTGTTTTTGTTTGTTTGTTTTTGAGACAGAATTGCCCAGGCTGGAGTGCTGTGGCGCAATCTCAGCTTACTGCAACTTCCACCTTCTGGGTTCATGCAATTCTGGTGCCTCAGCCTCCCAAGTATCTGGGTTTACAGACATGCACCACCATACCTGGCTAATTTTTGTATTTTTGGTAGAGATGGGGTTTCGCCGTGTTACCAGGCTGGTCTTGAATTCCTGGCCCCATGTGATCCCCCGGCCTCATGCGATCTGCCCGCCTCAGCCTCCCTAAGTGCTGGGATTATAGGCGTGAGCCACCCAACCCAGCCAGTACTCTGTTTTTGATAGCTATTCACAATGGGAAAGGATGTAGCAACACATTTTAACCCTATGTTGAGTTTTAGGTGGGTTCCTTTGAAATTTTGTTAAGGCTAACTTTTGTTAATTTTTTTAAAAAAGTGTAAATTAGGAAATGGGTTTTGAATTCCCAAATGGGGGGATTAAATGTATTTTTACGGCTTATATCTGTTTATTATTCAGTATTCCTGTGTACATTTTCTGTTTTTATTTTTATACAGGCTATGTAGAACCAATGCAGACACTCAATGATGTGTTAG	-			P-0046741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1	20	0	0	ENST00000233146.2:c.1760-822_1800del		p.X587_splice	ENST00000233146	NM_000251.2	587																																																																																
TMPRSS2	7113	MSKCC	GRCh37	21	42843808	42843808	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772196502		P-0046741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	70	353	1	ENST00000398585.3:c.1111C>T	p.His371Tyr	p.H371Y	ENST00000398585	NM_001135099.1	371	Cat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	135	246	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0048299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	253	851	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0048299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	378	587	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0048299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	54	183	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589618	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519838		P-0048299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	60	108	0	ENST00000274335.5:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000274335		461	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411937	63411937	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	421	924	0	ENST00000330258.3:c.1230G>A	p.Trp410Ter	p.W410*	ENST00000330258	NM_152424.3	410	tgG/tgA																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70970924	70970924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1277239045		P-0048299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	310	570	1	ENST00000276594.2:c.1337G>A	p.Arg446Gln	p.R446Q	ENST00000276594	NM_024504.3	446	cGg/cAg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134513	41134513	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	187	379	1	ENST00000379561.5:c.1115A>G	p.Glu372Gly	p.E372G	ENST00000379561	NM_002015.3	372	gAa/gGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	143	450	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0048822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	170	1033	5	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
ALK	238	MSKCC	GRCh37	2	30142927	30142927	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs978946990		P-0048822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	89	1249	2	ENST00000389048.3:c.599G>A	p.Arg200Lys	p.R200K	ENST00000389048	NM_004304.4	200	aGa/aAa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031889	26031889	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	44	443	0	ENST00000244661.2:c.400G>C	p.Glu134Gln	p.E134Q	ENST00000244661	NM_003537.3	134	Gaa/Caa																																																																															
ERF	2077	MSKCC	GRCh37	19	42759146	42759146	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	62	607	3	ENST00000222329.4:c.6G>C	p.Lys2Asn	p.K2N	ENST00000222329	NM_006494.2	2	aaG/aaC																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64132935	64132935	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0048822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	69	774	1	ENST00000334205.4:c.1069C>T	p.Gln357Ter	p.Q357*	ENST00000334205	NM_003942.2	357	Cag/Tag																																																																															
RET	5979	MSKCC	GRCh37	10	43615018	43615018	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587778657		P-0048822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	77	1061	2	ENST00000355710.3:c.2432C>G	p.Ser811Cys	p.S811C	ENST00000355710	NM_020975.4	811	tCc/tGc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18649027	18649027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	43	364	0	ENST00000266497.5:c.2702C>T	p.Pro901Leu	p.P901L	ENST00000266497		901	cCa/cTa																																																																															
STAT3	6774	MSKCC	GRCh37	17	40467773	40467773	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	63	604	1	ENST00000264657.5:c.2303C>A	p.Ser768Tyr	p.S768Y	ENST00000264657	NM_139276.2	768	tCc/tAc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40880852	40880852	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1194330891		P-0048822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	45	500	1	ENST00000428826.2:c.108G>A	p.Met36Ile	p.M36I	ENST00000428826		36	atG/atA																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210818	2210818	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	63	829	0	ENST00000398665.3:c.1315C>T	p.Gln439Ter	p.Q439*	ENST00000398665	NM_032482.2	439	Cag/Tag																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605856	46605856	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	55	774	0	ENST00000263734.3:c.1504G>C	p.Glu502Gln	p.E502Q	ENST00000263734	NM_001430.4	502	Gag/Cag																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99175925	99175925	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0048822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	51	553	1	ENST00000074304.5:c.1838-1G>A		p.X613_splice	ENST00000074304	NM_001134224.1	613																																																																																
FOXP1	27086	MSKCC	GRCh37	3	71026853	71026853	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	28	259	0	ENST00000318789.4:c.1369G>C	p.Glu457Gln	p.E457Q	ENST00000318789	NM_032682.5	457	Gaa/Caa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38953158	38953158	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	23	237	0	ENST00000357387.3:c.2826G>C	p.Leu942Phe	p.L942F	ENST00000357387	NM_152756.3	942	ttG/ttC																																																																															
SESN1	27244	MSKCC	GRCh37	6	109314103	109314103	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0048822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	28	349	0	ENST00000436639.2:c.1121-1G>C		p.X374_splice	ENST00000436639	NM_014454.2	374																																																																																
AGO2	27161	MSKCC	GRCh37	8	141559377	141559377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	72	965	6	ENST00000220592.5:c.1424G>A	p.Arg475Lys	p.R475K	ENST00000220592	NM_012154.3	475	aGa/aAa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5050695	5050695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	3535	339	6	ENST00000381652.3:c.478G>A	p.Asp160Asn	p.D160N	ENST00000381652	NM_004972.3	160	Gat/Aat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449799	8449799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61733196		P-0048822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	46	446	0	ENST00000356435.5:c.3914C>T	p.Pro1305Leu	p.P1305L	ENST00000356435		1305	cCg/cTg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342772	87342772	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	37	502	0	ENST00000277120.3:c.1057C>G	p.His353Asp	p.H353D	ENST00000277120		353	Cac/Gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0049459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	304	574	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225940	2225940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	133	708	1	ENST00000326181.6:c.1732G>A	p.Glu578Lys	p.E578K	ENST00000326181	NM_032271.2	578	Gag/Aag																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477184	67477184	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1320208623		P-0049459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	84	466	1	ENST00000327367.4:c.991G>A	p.Val331Ile	p.V331I	ENST00000327367	NM_005902.3	331	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0049459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	159	328	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
IL7R	3575	MSKCC	GRCh37	5	35861023	35861023	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138482569		P-0049459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	85	343	0	ENST00000303115.3:c.152C>T	p.Ser51Leu	p.S51L	ENST00000303115	NM_002185.3	51	tCg/tTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143976	11143976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	134	513	0	ENST00000344626.4:c.3557C>T	p.Ala1186Val	p.A1186V	ENST00000344626	NM_003072.3	1186	gCg/gTg																																																																															
JUN	3725	MSKCC	GRCh37	1	59247964	59247964	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	103	612	0	ENST00000371222.2:c.779T>C	p.Met260Thr	p.M260T	ENST00000371222	NM_002228.3	260	aTg/aCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0054407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	70	411	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0054407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	62	420	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0054407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	50	653	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0054407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	157	1132	5	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593505	48593505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	42	324	0	ENST00000342988.3:c.1256G>T	p.Gly419Val	p.G419V	ENST00000342988	NM_005359.5	419	gGg/gTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862749	9862749	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150316865		P-0054407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	103	677	0	ENST00000330684.3:c.2554G>A	p.Val852Met	p.V852M	ENST00000330684	NM_001134407.1	852	Gtg/Atg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244257	5244257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	63	1041	2	ENST00000357368.4:c.1225G>A	p.Gly409Ser	p.G409S	ENST00000357368	NM_002850.3	409	Ggc/Agc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67198888	67198888	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751194292		P-0054407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	104	605	1	ENST00000312629.5:c.359G>A	p.Arg120Gln	p.R120Q	ENST00000312629	NM_003952.2	120	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920444	114920444	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1219807932		P-0054407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	98	536	0	ENST00000543371.1:c.1385C>T	p.Pro462Leu	p.P462L	ENST00000543371	NM_001198531.1	462	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112174516	112174516	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0054407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	58	330	0	ENST00000257430.4:c.3225T>A	p.Tyr1075Ter	p.Y1075*	ENST00000257430	NM_000038.5	1075	taT/taA																																																																															
APC	324	MSKCC	GRCh37	5	112175775	112175778	+	frameshift_variant	Frame_Shift_Ins	INS	GTAC	GTAC	AATCCAGACGGAAAA			P-0054407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	46	338	0	ENST00000257430.4:c.4484_4487delinsAATCCAGACGGAAAA	p.Ser1495LysfsTer16	p.S1495Kfs*16	ENST00000257430	NM_000038.5	1495	aGTACt/aAATCCAGACGGAAAAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023769	27023769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	69	534	1	ENST00000324856.7:c.879del	p.Thr294ProfsTer69	p.T294Pfs*69	ENST00000324856	NM_006015.4	292	aCc/ac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097621	27097622	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	76	474	0	ENST00000324856.7:c.3216dup	p.Trp1073MetfsTer32	p.W1073Mfs*32	ENST00000324856	NM_006015.4	1070	-/A																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	51	372	0	ENST00000262741.5:c.883del	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120459187	120459187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	97	553	0	ENST00000256646.2:c.6158G>A	p.Arg2053His	p.R2053H	ENST00000256646	NM_024408.3	2053	cGc/cAc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981161	201981163	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	100	492	0	ENST00000359651.3:c.241_243del	p.Glu81del	p.E81del	ENST00000359651		80	gtGGAg/gtg																																																																															
RET	5979	MSKCC	GRCh37	10	43620366	43620366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758191409		P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	43	481	2	ENST00000355710.3:c.2975C>T	p.Pro992Leu	p.P992L	ENST00000355710	NM_020975.4	992	cCg/cTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	74	383	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
CTR9	9646	MSKCC	GRCh37	11	10781744	10781744	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	60	382	0	ENST00000361367.2:c.617A>G	p.His206Arg	p.H206R	ENST00000361367	NM_014633.3	206	cAt/cGt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118392805	118392805	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	65	518	0	ENST00000534358.1:c.11837A>G	p.Asp3946Gly	p.D3946G	ENST00000534358	NM_005933.3	3946	gAc/gGc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	38	498	0	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428387	49428387	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	68	544	0	ENST00000301067.7:c.10418A>G	p.His3473Arg	p.H3473R	ENST00000301067	NM_003482.3	3473	cAt/cGt																																																																															
USP8	9101	MSKCC	GRCh37	15	50769161	50769161	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148200969		P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	51	389	0	ENST00000307179.4:c.965G>A	p.Arg322Gln	p.R322Q	ENST00000307179		322	cGa/cAa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347982	347983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs764366602		P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	79	613	0	ENST00000262320.3:c.1523dup	p.Ala509CysfsTer82	p.A509Cfs*82	ENST00000262320	NM_003502.3	508	ggt/ggGt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223314	2223314	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	48	570	0	ENST00000326181.6:c.926A>G	p.Asp309Gly	p.D309G	ENST00000326181	NM_032271.2	309	gAc/gGc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3642772	3642772	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	58	462	0	ENST00000294008.3:c.2255T>C	p.Leu752Pro	p.L752P	ENST00000294008	NM_032444.2	752	cTg/cCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830604	72830604	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	62	551	1	ENST00000268489.5:c.5977del	p.Ser1993ProfsTer4	p.S1993Pfs*4	ENST00000268489	NM_006885.3	1993	Tcc/cc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16024505	16024505	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	69	509	2	ENST00000268712.3:c.1713del	p.Arg572GlufsTer18	p.R572Efs*18	ENST00000268712	NM_006311.3	571	ggG/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	148	681	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	112	498	0	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58701017	58701017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	54	482	0	ENST00000305921.3:c.608C>A	p.Pro203Gln	p.P203Q	ENST00000305921	NM_003620.3	203	cCg/cAg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533905	63533905	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	114	536	0	ENST00000307078.5:c.1249del	p.Ala417ArgfsTer41	p.A417Rfs*41	ENST00000307078	NM_004655.3	417	Gcg/cg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533942	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	65	486	0	ENST00000307078.5:c.1212_1215del	p.Glu405AlafsTer52	p.E405Afs*52	ENST00000307078	NM_004655.3	404	agAGAG/ag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1297203260		P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	114	534	0	ENST00000245479.2:c.916del	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	92	597	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222128	2222128	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	57	568	0	ENST00000398665.3:c.2960A>G	p.His987Arg	p.H987R	ENST00000398665	NM_032482.2	987	cAc/cGc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231557	5231557	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150939732		P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	66	420	0	ENST00000357368.4:c.1919G>A	p.Arg640His	p.R640H	ENST00000357368	NM_002850.3	640	cGc/cAc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250885	10250885	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	44	487	0	ENST00000340748.4:c.3595A>G	p.Met1199Val	p.M1199V	ENST00000340748		1199	Atg/Gtg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15383640	15383640	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	54	417	0	ENST00000263377.2:c.271A>G	p.Lys91Glu	p.K91E	ENST00000263377	NM_058243.2	91	Aag/Gag																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587776934		P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	16	524	0	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211448	36211448	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	53	629	0	ENST00000222270.7:c.1199A>G	p.Lys400Arg	p.K400R	ENST00000222270	NM_014727.1	400	aAg/aGg																																																																															
CIC	23152	MSKCC	GRCh37	19	42794441	42794441	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	71	604	0	ENST00000575354.2:c.1526del	p.Pro509HisfsTer14	p.P509Hfs*14	ENST00000575354	NM_015125.3	507	cgC/cg																																																																															
CIC	23152	MSKCC	GRCh37	19	42795269	42795269	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs34000070		P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	64	542	0	ENST00000575354.2:c.2353del	p.Ala785ProfsTer139	p.A785Pfs*139	ENST00000575354	NM_015125.3	783	caG/ca																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523009	25523009	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	36	432	4	ENST00000264709.3:c.176del	p.Pro59ArgfsTer13	p.P59Rfs*13	ENST00000264709	NM_175629.2	59	cCg/cg																																																																															
ALK	238	MSKCC	GRCh37	2	30143048	30143048	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	50	636	0	ENST00000389048.3:c.478del	p.Glu160ArgfsTer26	p.E160Rfs*26	ENST00000389048	NM_004304.4	160	Gag/ag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426752	212426752	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	66	499	0	ENST00000342788.4:c.2363T>G	p.Leu788Arg	p.L788R	ENST00000342788	NM_005235.2	788	cTg/cGg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663330	227663330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	81	437	0	ENST00000305123.5:c.125C>T	p.Ala42Val	p.A42V	ENST00000305123	NM_005544.2	42	gCg/gTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	98	514	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713414	40713414	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	53	583	0	ENST00000373198.4:c.4101del	p.Ser1368ProfsTer31	p.S1368Pfs*31	ENST00000373198	NM_133170.3	1367	ccC/cc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	19	448	0	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279789	46279789	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs969825525		P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	81	571	0	ENST00000371998.3:c.3715C>T	p.Arg1239Ter	p.R1239*	ENST00000371998		1239	Cga/Tga																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29383127	29383127	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	69	528	0	ENST00000544604.2:c.364G>T	p.Gly122Ter	p.G122*	ENST00000544604	NM_001206998.1	122	Gga/Tga																																																																															
EP300	2033	MSKCC	GRCh37	22	41536145	41536145	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1457616974		P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	46	318	0	ENST00000263253.7:c.1762G>A	p.Val588Ile	p.V588I	ENST00000263253	NM_001429.3	588	Gtc/Atc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	70	514	2	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
MLH1	4292	MSKCC	GRCh37	3	37035151	37035151	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	60	379	0	ENST00000231790.2:c.113A>T	p.Asn38Ile	p.N38I	ENST00000231790	NM_000249.3	38	aAc/aTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528621	89528621	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780470195		P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	50	398	0	ENST00000336596.2:c.2921C>T	p.Thr974Met	p.T974M	ENST00000336596	NM_005233.5	974	aCg/aTg																																																																															
ATR	545	MSKCC	GRCh37	3	142186817	142186817	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	32	329	0	ENST00000350721.4:c.6646A>G	p.Thr2216Ala	p.T2216A	ENST00000350721	NM_001184.3	2216	Act/Gct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793663		P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	34	444	0	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542144	187542144	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	57	612	0	ENST00000441802.2:c.5596A>G	p.Thr1866Ala	p.T1866A	ENST00000441802	NM_005245.3	1866	Aca/Gca																																																																															
APC	324	MSKCC	GRCh37	5	112179813	112179813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	63	474	0	ENST00000257430.4:c.8522C>T	p.Thr2841Ile	p.T2841I	ENST00000257430	NM_000038.5	2841	aCa/aTa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721235	176721235	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	51	528	0	ENST00000439151.2:c.6866G>T	p.Arg2289Met	p.R2289M	ENST00000439151	NM_022455.4	2289	aGg/aTg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323144	31323144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	108	716	0	ENST00000412585.2:c.845del	p.Thr282AsnfsTer15	p.T282Nfs*15	ENST00000412585	NM_005514.6	282	aCa/aa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168969	32168969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs567483221		P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	68	594	0	ENST00000375023.3:c.4064G>A	p.Arg1355Gln	p.R1355Q	ENST00000375023	NM_004557.3	1355	cGg/cAg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117704479	117704479	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	34	359	0	ENST00000368508.3:c.2496+1G>A		p.X832_splice	ENST00000368508	NM_002944.2	832																																																																																
RECQL4	9401	MSKCC	GRCh37	8	145741861	145741862	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	202	545	0	ENST00000428558.2:c.641_642del	p.Ser214Ter	p.S214*	ENST00000428558	NM_004260.3	214	tCA/t																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2060867	2060867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	88	550	0	ENST00000349721.2:c.1573C>T	p.Arg525Cys	p.R525C	ENST00000349721	NM_003070.3	525	Cgt/Tgt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460504	8460504	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148300682		P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	75	471	1	ENST00000356435.5:c.3782C>T	p.Thr1261Met	p.T1261M	ENST00000356435		1261	aCg/aTg																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15821896	15821896	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	36	408	0	ENST00000307771.7:c.294del	p.Lys98AsnfsTer10	p.K98Nfs*10	ENST00000307771	NM_005089.3	97	Aaa/aa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045698	47045698	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	50	641	0	ENST00000329236.7:c.2345A>G	p.Asn782Ser	p.N782S	ENST00000329236	NM_001204466.1	782	aAc/aGc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411864	63411864	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767572122		P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	54	639	1	ENST00000330258.3:c.1303G>A	p.Gly435Ser	p.G435S	ENST00000330258	NM_152424.3	435	Ggc/Agc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123224461	123224461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	54	457	0	ENST00000218089.9:c.3314G>A	p.Ser1105Asn	p.S1105N	ENST00000218089	NM_001042749.1	1105	aGc/aAc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324917	31324917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	44	434	0	ENST00000412585.2:c.19del	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000412585	NM_005514.6	7	Cga/ga																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660807	227660808	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs755468274		P-0061498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	78	590	0	ENST00000305123.5:c.2645_2647dup	p.Gln882dup	p.Q882dup	ENST00000305123	NM_005544.2	882	ccc/cAGCcc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	105	463	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120459245	120459246	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	100	444	0	ENST00000256646.2:c.6099dup	p.Ala2034CysfsTer24	p.A2034Cfs*24	ENST00000256646	NM_024408.3	2033	-/T																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846265	156846265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs746910337		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	100	413	0	ENST00000524377.1:c.1706A>G	p.His569Arg	p.H569R	ENST00000524377	NM_002529.3	569	cAc/cGc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162743362	162743362	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372362070		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	110	419	1	ENST00000367921.3:c.1832G>A	p.Arg611Gln	p.R611Q	ENST00000367921	NM_006182.2	611	cGa/cAa																																																																															
NUF2	83540	MSKCC	GRCh37	1	163318812	163318812	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	101	343	0	ENST00000271452.3:c.1202T>A	p.Ile401Asn	p.I401N	ENST00000271452	NM_145697.2	401	aTt/aAt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851326	63851326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	125	468	0	ENST00000279873.7:c.2104G>A	p.Ala702Thr	p.A702T	ENST00000279873	NM_032199.2	702	Gcc/Acc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685270	89685271	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	45	209	0	ENST00000371953.3:c.170dup	p.Leu57PhefsTer6	p.L57Ffs*6	ENST00000371953	NM_000314.4	55	-/T																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717618	89717619	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	77	331	0	ENST00000371953.3:c.644_645del	p.Phe215CysfsTer27	p.F215Cfs*27	ENST00000371953	NM_000314.4	215	TTt/t																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118392858	118392858	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781866935		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	119	432	0	ENST00000534358.1:c.11890G>A	p.Ala3964Thr	p.A3964T	ENST00000534358	NM_005933.3	3964	Gcc/Acc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21624396	21624398	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-	rs749841294		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	84	372	0	ENST00000421138.2:c.1631_1633del	p.Lys544del	p.K544del	ENST00000421138		544	aAGAtt/att																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	55	357	2	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
RAB35	11021	MSKCC	GRCh37	12	120536918	120536918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1367775509		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	104	394	0	ENST00000229340.5:c.268G>A	p.Val90Ile	p.V90I	ENST00000229340	NM_006861.6	90	Gtc/Atc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	112	418	4	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
POLE	5426	MSKCC	GRCh37	12	133209298	133209298	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1060500809		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	32	444	0	ENST00000320574.5:c.6088del	p.Ala2030ProfsTer18	p.A2030Pfs*18	ENST00000320574	NM_006231.2	2030	Gcc/cc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914049	32914049	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1238686039		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	84	381	0	ENST00000380152.3:c.5557T>C	p.Cys1853Arg	p.C1853R	ENST00000380152		1853	Tgt/Cgt																																																																															
KLF5	688	MSKCC	GRCh37	13	73636580	73636581	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	153	467	0	ENST00000377687.4:c.848dup	p.Cys284LeufsTer31	p.C284Lfs*31	ENST00000377687	NM_001730.3	281	-/C																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987135	36987135	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	86	363	0	ENST00000354822.5:c.554del	p.Pro185ArgfsTer43	p.P185Rfs*43	ENST00000354822	NM_001079668.2	185	cCg/cg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562174	95562174	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	53	389	0	ENST00000343455.3:c.5083A>G	p.Asn1695Asp	p.N1695D	ENST00000343455	NM_177438.2	1695	Aat/Gat																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348711	11348712	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	74	379	0	ENST00000332029.2:c.624dup	p.Phe209LeufsTer44	p.F209Lfs*44	ENST00000332029	NM_003745.1	208	-/C																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041867	14041869	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	124	430	0	ENST00000311895.7:c.2417_2419del	p.Pro806del	p.P806del	ENST00000311895	NM_005236.2	805	tCTCct/tct																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81990331	81990331	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768299957		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	88	425	0	ENST00000359376.3:c.3602G>A	p.Arg1201His	p.R1201H	ENST00000359376	NM_002661.3	1201	cGc/cAc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805935	89805937	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-	rs927201841		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	120	470	0	ENST00000389301.3:c.3959_3961del	p.Leu1320del	p.L1320del	ENST00000389301	NM_000135.2	1320	cTCCgt/cgt																																																																															
RARA	5914	MSKCC	GRCh37	17	38508267	38508267	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754292583		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	88	376	1	ENST00000254066.5:c.575G>A	p.Arg192His	p.R192H	ENST00000254066	NM_000964.3	192	cGc/cAc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	98	409	0	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40364063	40364063	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			71	15	62	0	ENST00000293328.3:c.1619A>G	p.Asn540Ser	p.N540S	ENST00000293328	NM_012448.3	540	aAc/aGc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435700	56435701	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	123	414	0	ENST00000407977.2:c.1436_1437del	p.Val479GlyfsTer25	p.V479Gfs*25	ENST00000407977		479	gTG/g																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438206	56438207	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	92	432	0	ENST00000407977.2:c.786_787del	p.Gly263GlufsTer18	p.G263Efs*18	ENST00000407977		262	tcAGgg/tcgg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	107	465	1	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533942	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	96	407	0	ENST00000307078.5:c.1212_1215del	p.Glu405AlafsTer52	p.E405Afs*52	ENST00000307078	NM_004655.3	404	agAGAG/ag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534379	63534379	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	149	488	0	ENST00000307078.5:c.1142T>C	p.Leu381Pro	p.L381P	ENST00000307078	NM_004655.3	381	cTg/cCg																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66511578	66511578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	76	353	0	ENST00000358598.2:c.38G>A	p.Arg13His	p.R13H	ENST00000358598	NM_212471.2	13	cGc/cAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117848	70117848	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs886042523		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	95	440	0	ENST00000245479.2:c.316A>G	p.Lys106Glu	p.K106E	ENST00000245479	NM_000346.3	106	Aag/Gag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1297203260		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	79	423	1	ENST00000245479.2:c.916del	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78896525	78896525	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	101	371	0	ENST00000306801.3:c.2522C>T	p.Ala841Val	p.A841V	ENST00000306801	NM_020761.2	841	gCc/gTc																																																																															
BCL2	596	MSKCC	GRCh37	18	60985377	60985377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	59	431	0	ENST00000333681.4:c.523C>A	p.Leu175Met	p.L175M	ENST00000333681		175	Ctg/Atg																																																																															
MLLT1	4298	MSKCC	GRCh37	19	6230591	6230591	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1481816585		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	79	359	0	ENST00000252674.7:c.410G>A	p.Arg137Gln	p.R137Q	ENST00000252674	NM_005934.3	137	cGg/cAg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610591	10610591	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1173824866		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	115	396	0	ENST00000171111.5:c.119C>T	p.Ala40Val	p.A40V	ENST00000171111	NM_203500.1	40	gCg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223686	36223686	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775158252		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	122	560	0	ENST00000222270.7:c.6236G>A	p.Arg2079Gln	p.R2079Q	ENST00000222270	NM_014727.1	2079	cGg/cAg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	117	605	1	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26029193	26029195	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	59	341	0	ENST00000435504.4:c.155_157del	p.Pro52del	p.P52del	ENST00000435504		52	cCTCtt/ctt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47705527	47705528	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	76	378	0	ENST00000233146.2:c.2332dup	p.Cys778LeufsTer9	p.C778Lfs*9	ENST00000233146	NM_000251.2	776	gct/gcTt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	113	486	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96920667	96920667	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	112	360	0	ENST00000258439.3:c.313C>A	p.Leu105Met	p.L105M	ENST00000258439	NM_001193304.2	105	Ctg/Atg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178129303	178129303	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1437398564		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	76	249	0	ENST00000397062.3:c.2T>C	p.Met1?	p.M1?	ENST00000397062	NM_006164.4	1	aTg/aCg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513282	44513287	+	inframe_deletion	In_Frame_Del	DEL	CCACCG	CCACCG	-	rs769920981		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	83	396	0	ENST00000291552.4:c.648_653del	p.Gly222_Gly223del	p.G222_G223del	ENST00000291552	NM_006758.2	216	ggCGGTGGt/ggt																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29442702	29442702	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	101	297	0	ENST00000544604.2:c.745-2A>C		p.X249_splice	ENST00000544604	NM_001206998.1	249																																																																																
MLH1	4292	MSKCC	GRCh37	3	37090446	37090446	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs63750217		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	76	329	0	ENST00000231790.2:c.2041G>A	p.Ala681Thr	p.A681T	ENST00000231790	NM_000249.3	681	Gct/Act																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933456	49933456	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	85	549	4	ENST00000296474.3:c.2734del	p.Asp912ThrfsTer24	p.D912Tfs*24	ENST00000296474	NM_002447.2	912	Gac/ac																																																																															
TP63	8626	MSKCC	GRCh37	3	189586470	189586470	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147148566		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	115	403	0	ENST00000264731.3:c.1094C>T	p.Ser365Leu	p.S365L	ENST00000264731	NM_003722.4	365	tCg/tTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1294665	1294665	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	93	395	3	ENST00000310581.5:c.336del	p.Glu113ArgfsTer15	p.E113Rfs*15	ENST00000310581	NM_198253.2	112	ccC/cc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589135	67589135	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	37	333	0	ENST00000274335.5:c.1127del	p.Gly376GlufsTer5	p.G376Efs*5	ENST00000274335		375	Ggg/gg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	87	364	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512355	149512355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	83	499	0	ENST00000261799.4:c.1085C>T	p.Ala362Val	p.A362V	ENST00000261799	NM_002609.3	362	gCt/gTt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522560	176522560	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201831200		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	99	481	0	ENST00000292408.4:c.1657G>A	p.Ala553Thr	p.A553T	ENST00000292408	NM_213647.1	553	Gcc/Acc																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032174	26032174	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	130	550	0	ENST00000244661.2:c.115C>G	p.Pro39Ala	p.P39A	ENST00000244661	NM_003537.3	39	Cct/Gct																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	52	420	1	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163554	32163554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	63	392	1	ENST00000375023.3:c.5672del	p.Gly1891AlafsTer13	p.G1891Afs*13	ENST00000375023	NM_004557.3	1891	gGc/gc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32813426	32813426	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	89	457	0	ENST00000354258.4:c.2357A>G	p.His786Arg	p.H786R	ENST00000354258	NM_000593.5	786	cAc/cGc																																																																															
RAC1	5879	MSKCC	GRCh37	7	6431577	6431577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	57	178	0	ENST00000356142.4:c.130G>A	p.Val44Ile	p.V44I	ENST00000356142	NM_018890.3	44	Gtt/Att																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508205	106508205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	93	397	0	ENST00000359195.3:c.199G>A	p.Val67Met	p.V67M	ENST00000359195	NM_002649.2	67	Gtg/Atg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874092	151874093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	90	414	0	ENST00000262189.6:c.8445dup	p.Ser2816IlefsTer6	p.S2816Ifs*6	ENST00000262189	NM_170606.2	2815	-/A																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923086	39923087	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	83	199	0	ENST00000378444.4:c.3621dup	p.Gln1208ThrfsTer8	p.Q1208Tfs*8	ENST00000378444	NM_001123385.1	1207	-/A																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0058146-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	94	423	4	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0058230-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			584	109	514	0	ENST00000269305.4:c.686_687del	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971142	21971142	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058230-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			681	61	599	0	ENST00000304494.5:c.216C>A	p.Cys72Ter	p.C72*	ENST00000304494	NM_000077.4	72	tgC/tgA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106175	27106175	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058230-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			648	124	569	0	ENST00000324856.7:c.5786G>C	p.Ser1929Thr	p.S1929T	ENST00000324856	NM_006015.4	1929	aGt/aCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0058230-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			318	49	323	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178948085	178948085	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058230-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			402	39	445	0	ENST00000263967.3:c.2857C>G	p.Pro953Ala	p.P953A	ENST00000263967	NM_006218.2	953	Cca/Gca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401321	139401321	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771192471		P-0058230-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			713	58	615	0	ENST00000277541.6:c.3748G>A	p.Gly1250Ser	p.G1250S	ENST00000277541	NM_017617.3	1250	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0059936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	183	408	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23637631	23637631	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45476495		P-0059936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	187	399	0	ENST00000261584.4:c.2674G>A	p.Glu892Lys	p.E892K	ENST00000261584	NM_024675.3	892	Gaa/Aaa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120471692	120471692	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			3643	232	458	0	ENST00000256646.2:c.3799G>T	p.Glu1267Ter	p.E1267*	ENST00000256646	NM_024408.3	1267	Gag/Tag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046540	30046540	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	141	523	0	ENST00000331968.5:c.2643del	p.Thr882HisfsTer3	p.T882Hfs*3	ENST00000331968	NM_002742.2	881	ccC/cc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99478112	99478113	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCAGGGGTCGTTTGGGATGGTCTATGAA			P-0059936-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	63	506	0	ENST00000268035.6:c.3019_3047dup	p.Val1017ArgfsTer16	p.V1017Rfs*16	ENST00000268035	NM_000875.3	1006	ggg/gGGCAGGGGTCGTTTGGGATGGTCTATGAAgg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188072	11188072	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			387	59	657	0	ENST00000361445.4:c.6022C>A	p.Gln2008Lys	p.Q2008K	ENST00000361445	NM_004958.3	2008	Cag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087379	27087379	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			272	52	565	1	ENST00000324856.7:c.1953G>T	p.Met651Ile	p.M651I	ENST00000324856	NM_006015.4	651	atG/atT																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948545	71948545	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			375	130	849	0	ENST00000298229.2:c.3257G>T	p.Arg1086Leu	p.R1086L	ENST00000298229	NM_001567.3	1086	cGt/cTt																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800884	120800884	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			317	137	594	0	ENST00000257552.2:c.364G>T	p.Val122Leu	p.V122L	ENST00000257552	NM_002442.3	122	Gtg/Ttg																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628119	90628119	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs754284825		P-0060465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			411	39	866	0	ENST00000330062.3:c.1200G>T	p.Lys400Asn	p.K400N	ENST00000330062	NM_002168.2	400	aaG/aaT																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644791	67644792	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0060465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			418	81	671	0	ENST00000264010.4:c.59dup	p.Glu21GlyfsTer29	p.E21Gfs*29	ENST00000264010	NM_006565.3	19	gga/ggAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0060465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			265	266	761	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37872790	37872790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			482	132	759	0	ENST00000269571.5:c.1669G>T	p.Ala557Ser	p.A557S	ENST00000269571		557	Gcc/Tcc																																																																															
STK11	6794	MSKCC	GRCh37	19	1223048	1223048	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0060465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			222	115	677	0	ENST00000326873.7:c.985A>T	p.Lys329Ter	p.K329*	ENST00000326873	NM_000455.4	329	Aag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597496	10597496	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0060465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			179	107	467	0	ENST00000171111.5:c.1709-2A>T		p.X570_splice	ENST00000171111	NM_203500.1	570																																																																																
MEF2B	100271849	MSKCC	GRCh37	19	19257150	19257150	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			167	41	416	0	ENST00000162023.5:c.813G>T	p.Gln271His	p.Q271H	ENST00000162023		271	caG/caT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306664	41306664	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			301	102	553	0	ENST00000373198.4:c.995G>C	p.Gly332Ala	p.G332A	ENST00000373198	NM_133170.3	332	gGc/gCc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24167526	24167526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			301	122	641	0	ENST00000263121.7:c.910G>T	p.Gly304Cys	p.G304C	ENST00000263121	NM_003073.3	304	Ggc/Tgc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56167779	56167779	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	88	556	0	ENST00000399503.3:c.1344G>T	p.Leu448Phe	p.L448F	ENST00000399503	NM_005921.1	448	ttG/ttT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047966	180047966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			276	39	864	0	ENST00000261937.6:c.2209C>T	p.Arg737Cys	p.R737C	ENST00000261937	NM_182925.4	737	Cgc/Tgc																																																																															
LYN	4067	MSKCC	GRCh37	8	56922478	56922478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			340	133	501	0	ENST00000519728.1:c.1348G>T	p.Ala450Ser	p.A450S	ENST00000519728	NM_002350.3	450	Gcc/Tcc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317499	1317499	+	downstream_gene_variant	3'Flank	SNP	G	G	T			P-0060465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			221	90	439	0				ENST00000381566																																																																																		
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28929495		P-0061004-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	603	390	0	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0061004-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			15	265	413	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
ATM	472	MSKCC	GRCh37	11	108202644	108202647	+	frameshift_variant	Frame_Shift_Del	DEL	TTTG	TTTG	-			P-0061004-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			312	78	344	0	ENST00000278616.4:c.7671_7674del	p.Phe2558LeufsTer5	p.F2558Lfs*5	ENST00000278616	NM_000051.3	2556	acTTTG/ac																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145743153	145743153	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061004-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			574	140	461	0	ENST00000428558.2:c.16del	p.Asp6ThrfsTer43	p.D6Tfs*43	ENST00000428558	NM_004260.3	6	Gac/ac																																																																															
MED12	9968	MSKCC	GRCh37	X	70346940	70346940	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061004-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			700	109	510	0	ENST00000374080.3:c.2807G>T	p.Cys936Phe	p.C936F	ENST00000374080		936	tGc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0061302-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			287	20	484	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
CCND2	894	MSKCC	GRCh37	12	4383225	4383225	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061302-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			185	90	516	0	ENST00000261254.3:c.19G>C	p.Glu7Gln	p.E7Q	ENST00000261254	NM_001759.3	7	Gag/Cag																																																																															
MITF	4286	MSKCC	GRCh37	3	70014344	70014344	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061302-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			268	25	453	0	ENST00000352241.4:c.1508A>T	p.Lys503Ile	p.K503I	ENST00000352241	NM_198159.2	503	aAa/aTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0061304-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1056	1010	557	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577102	7577102	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1064793881		P-0061304-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			498	180	577	0	ENST00000269305.4:c.836G>A	p.Gly279Glu	p.G279E	ENST00000269305	NM_001126112.2	279	gGg/gAg																																																																															
CDH1	999	MSKCC	GRCh37	16	68842707	68842707	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0061408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	101	325	0	ENST00000261769.5:c.643A>T	p.Lys215Ter	p.K215*	ENST00000261769	NM_004360.3	215	Aag/Tag																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1936892	1936892	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	57	276	0	ENST00000382895.3:c.1577G>C	p.Arg526Thr	p.R526T	ENST00000382895	NM_133330.2	526	aGa/aCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0061409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	36	410	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992805	72992805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	124	540	0	ENST00000268489.5:c.1240C>T	p.Pro414Ser	p.P414S	ENST00000268489	NM_006885.3	414	Ccc/Tcc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618661	37618665	+	frameshift_variant	Frame_Shift_Del	DEL	CACCA	CACCA	-			P-0061420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	179	689	0	ENST00000447079.4:c.338_342del	p.His113ProfsTer12	p.H113Pfs*12	ENST00000447079	NM_015083.1	113	CACCAc/c																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657643	37657643	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	131	429	0	ENST00000447079.4:c.2561del	p.Asn854IlefsTer14	p.N854Ifs*14	ENST00000447079	NM_015083.1	854	Aat/at																																																																															
RAC2	5880	MSKCC	GRCh37	22	37637626	37637626	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0061420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	115	544	0	ENST00000249071.6:c.107+1G>A		p.X36_splice	ENST00000249071	NM_002872.4	36																																																																																
MST1R	4486	MSKCC	GRCh37	3	49933777	49933777	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	169	618	0	ENST00000296474.3:c.2500C>A	p.Pro834Thr	p.P834T	ENST00000296474	NM_002447.2	834	Ccc/Acc																																																																															
TP63	8626	MSKCC	GRCh37	3	189608579	189608579	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs1340744193		P-0061420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	117	395	0	ENST00000264731.3:c.1654T>C	p.Phe552Leu	p.F552L	ENST00000264731	NM_003722.4	552	Ttc/Ctc																																																																															
KIT	3815	MSKCC	GRCh37	4	55564484	55564484	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	116	408	0	ENST00000288135.5:c.372G>T	p.Leu124Phe	p.L124F	ENST00000288135	NM_000222.2	124	ttG/ttT																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680297	30680297	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	119	514	0	ENST00000376406.3:c.1422C>A	p.His474Gln	p.H474Q	ENST00000376406	NM_014641.2	474	caC/caA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061235	38061242	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCGGAG	TGCCGGAG	C			P-0061420-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	124	634	0	ENST00000250448.2:c.747_754delinsG	p.Asp249GlufsTer70	p.D249Efs*70	ENST00000250448	NM_004496.3	249	gaCTCCGGCAac/gaGac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0061481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	250	565	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098966	178098966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	261	365	0	ENST00000397062.3:c.79G>A	p.Asp27Asn	p.D27N	ENST00000397062	NM_006164.4	27	Gat/Aat																																																																															
NUP93	9688	MSKCC	GRCh37	16	56872901	56872901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748209131		P-0061481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	26	378	0	ENST00000308159.5:c.2056G>A	p.Asp686Asn	p.D686N	ENST00000308159	NM_014669.4	686	Gac/Aac																																																																															
ATR	545	MSKCC	GRCh37	3	142254950	142254950	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0061481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	41	232	0	ENST00000350721.4:c.3819G>T	p.Lys1273Asn	p.K1273N	ENST00000350721	NM_001184.3	1273	aaG/aaT																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143003323	143003324	+	missense_variant	Missense_Mutation	DNP	TC	TC	CA			P-0061481-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	64	293	1	ENST00000262992.4:c.2502_2503delinsTG	p.Asn835Asp	p.N835D	ENST00000262992	NM_001101669.1	834	ctGAat/ctTGat																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0061483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	371	558	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25468919	25468919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	141	392	0	ENST00000264709.3:c.1444G>A	p.Glu482Lys	p.E482K	ENST00000264709	NM_175629.2	482	Gag/Aag																																																																															
CIC	23152	MSKCC	GRCh37	19	42799224	42799224	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	119	395	0	ENST00000575354.2:c.4708C>T	p.Gln1570Ter	p.Q1570*	ENST00000575354	NM_015125.3	1570	Cag/Tag																																																																															
RB1	5925	MSKCC	GRCh37	13	48954339	48954339	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061483-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	82	258	0	ENST00000267163.4:c.1460T>C	p.Leu487Ser	p.L487S	ENST00000267163	NM_000321.2	487	tTg/tCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0061484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	16	305	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0061484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	47	589	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
NF2	4771	MSKCC	GRCh37	22	30074249	30074279	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTGTCTTTCGACTTCAAAGATACTGACAT	GCCTGTCTTTCGACTTCAAAGATACTGACAT	-			P-0061484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	68	462	0	ENST00000338641.4:c.1512_1542del	p.Ser504ArgfsTer8	p.S504Rfs*8	ENST00000338641	NM_000268.3	504	aGCCTGTCTTTCGACTTCAAAGATACTGACATg/ag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0061486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	104	365	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
EGFR	1956	MSKCC	GRCh37	7	55210075	55210075	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0061486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	167	438	0	ENST00000275493.2:c.185T>G	p.Leu62Arg	p.L62R	ENST00000275493	NM_005228.3	62	cTt/cGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100340	27100340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	169	579	0	ENST00000324856.7:c.4052G>A	p.Gly1351Asp	p.G1351D	ENST00000324856	NM_006015.4	1351	gGc/gAc																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2058343	2058343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061486-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	121	456	0	ENST00000349721.2:c.1400G>T	p.Arg467Leu	p.R467L	ENST00000349721	NM_003070.3	467	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0061507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	151	531	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112157650	112157650	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	35	371	0	ENST00000257430.4:c.1370C>A	p.Ser457Ter	p.S457*	ENST00000257430	NM_000038.5	457	tCa/tAa																																																																															
ATRX	546	MSKCC	GRCh37	X	76845374	76845374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			118	24	414	0	ENST00000373344.5:c.6147G>T	p.Leu2049Phe	p.L2049F	ENST00000373344	NM_000489.3	2049	ttG/ttT																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912189	114912189	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867720073		P-0061507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	134	428	0	ENST00000543371.1:c.1259G>A	p.Arg420Gln	p.R420Q	ENST00000543371	NM_001198531.1	420	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175168	112175169	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0061507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	51	533	0	ENST00000257430.4:c.3880_3881del	p.Gln1294GlyfsTer6	p.Q1294Gfs*6	ENST00000257430	NM_000038.5	1293	ACa/a																																																																															
TSC2	7249	MSKCC	GRCh37	16	2110664	2110676	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTCCAGGCCATG	GTTCCAGGCCATG	CCAGCCCTGTGT			P-0061507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	155	632	1	ENST00000219476.3:c.976-7_981delinsCCAGCCCTGTGT		p.X326_splice	ENST00000219476	NM_000548.3	326																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0061508-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	62	303	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68844202	68844202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061508-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	151	600	0	ENST00000261769.5:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000261769	NM_004360.3	264	Cag/Tag																																																																															
RET	5979	MSKCC	GRCh37	10	43604499	43604499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061508-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	135	684	0	ENST00000355710.3:c.1084C>T	p.Leu362Phe	p.L362F	ENST00000355710	NM_020975.4	362	Ctc/Ttc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518326	187518326	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0061508-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	130	533	0	ENST00000441802.2:c.12369-1G>T		p.X4123_splice	ENST00000441802	NM_005245.3	4123																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0061510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	37	266	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0061510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	184	726	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
APC	324	MSKCC	GRCh37	5	112174266	112174267	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0061510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	112	566	0	ENST00000257430.4:c.2976dup	p.Lys993Ter	p.K993*	ENST00000257430	NM_000038.5	992	agt/agTt																																																																															
APC	324	MSKCC	GRCh37	5	112128142	112128142	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs78847145		P-0061510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	38	237	0	ENST00000257430.4:c.646-1G>T		p.X216_splice	ENST00000257430	NM_000038.5	216																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0061510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	104	387	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105968	27105977	+	frameshift_variant	Frame_Shift_Del	DEL	AGAGCAAGAC	AGAGCAAGAC	-			P-0061510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	453	705	0	ENST00000324856.7:c.5584_5593del	p.Lys1862CysfsTer18	p.K1862Cfs*18	ENST00000324856	NM_006015.4	1860	gAGAGCAAGACa/ga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187516864	187516864	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	36	532	0	ENST00000441802.2:c.13117T>C	p.Ser4373Pro	p.S4373P	ENST00000441802	NM_005245.3	4373	Tcc/Ccc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0061511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	377	563	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
RB1	5925	MSKCC	GRCh37	13	49039133	49039133	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs587776786		P-0061511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			55	98	164	0	ENST00000267163.4:c.2212-1G>A		p.X738_splice	ENST00000267163	NM_000321.2	738																																																																																
HLA-A	3105	MSKCC	GRCh37	6	29911254	29911254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	50	173	0	ENST00000376809.5:c.553G>T	p.Asp185Tyr	p.D185Y	ENST00000376809	NM_002116.7	185	Gat/Tat																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679718	88679718	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	120	453	0	ENST00000360948.2:c.745C>G	p.Gln249Glu	p.Q249E	ENST00000360948	NM_001012338.2	249	Cag/Gag																																																																															
CYLD	1540	MSKCC	GRCh37	16	50828308	50828308	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	160	517	0	ENST00000398568.2:c.2646G>T	p.Trp882Cys	p.W882C	ENST00000398568	NM_001042412.1	882	tgG/tgT																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946338	2946339	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0061511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	168	563	0	ENST00000396946.4:c.3398_3399delinsTT	p.Arg1133Leu	p.R1133L	ENST00000396946	NM_032415.4	1133	cGC/cTT																																																																															
TP63	8626	MSKCC	GRCh37	3	189526287	189526287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			901	85	794	0	ENST00000264731.3:c.551C>T	p.Ser184Leu	p.S184L	ENST00000264731	NM_003722.4	184	tCg/tTg																																																																															
ATR	545	MSKCC	GRCh37	3	142278135	142278135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	23	415	0	ENST00000350721.4:c.1690G>A	p.Asp564Asn	p.D564N	ENST00000350721	NM_001184.3	564	Gat/Aat																																																																															
CDH1	999	MSKCC	GRCh37	16	68771344	68771344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	51	539	0	ENST00000261769.5:c.26C>G	p.Ser9Trp	p.S9W	ENST00000261769	NM_004360.3	9	tCg/tGg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	82	842	0	ENST00000304494.5:c.132C>G	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/taG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	55	590	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
FGFR2	2263	MSKCC	GRCh37	10	123324058	123324058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs938460066		P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	60	471	0	ENST00000358487.5:c.412G>A	p.Asp138Asn	p.D138N	ENST00000358487	NM_000141.4	138	Gat/Aat																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324627	31324627	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs41561613		P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	58	791	0	ENST00000412585.2:c.181G>C	p.Asp61His	p.D61H	ENST00000412585	NM_005514.6	61	Gac/Cac																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8075565	8075565	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	61	571	0	ENST00000377482.5:c.115G>C	p.Glu39Gln	p.E39Q	ENST00000377482	NM_018948.3	39	Gag/Cag																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873041	136873041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	73	812	0	ENST00000241393.3:c.457G>A	p.Glu153Lys	p.E153K	ENST00000241393	NM_003467.2	153	Gaa/Aaa																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67196062	67196062	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	50	492	0	ENST00000312629.5:c.46G>C	p.Glu16Gln	p.E16Q	ENST00000312629	NM_003952.2	16	Gag/Cag																																																																															
ATM	472	MSKCC	GRCh37	11	108160338	108160338	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057516311		P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	20	264	0	ENST00000278616.4:c.4246C>T	p.Gln1416Ter	p.Q1416*	ENST00000278616	NM_000051.3	1416	Cag/Tag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	417059	417059	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			736	90	704	0	ENST00000399788.2:c.3491G>C	p.Cys1164Ser	p.C1164S	ENST00000399788	NM_001042603.1	1164	tGc/tCc																																																																															
MGA	23269	MSKCC	GRCh37	15	42003184	42003184	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	53	621	0	ENST00000219905.7:c.2721C>G	p.Phe907Leu	p.F907L	ENST00000219905	NM_001164273.1	907	ttC/ttG																																																																															
FANCA	2175	MSKCC	GRCh37	16	89845405	89845405	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	76	719	0	ENST00000389301.3:c.1722C>G	p.Phe574Leu	p.F574L	ENST00000389301	NM_000135.2	574	ttC/ttG																																																																															
FANCA	2175	MSKCC	GRCh37	16	89858936	89858936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	81	510	0	ENST00000389301.3:c.1026G>T	p.Met342Ile	p.M342I	ENST00000389301	NM_000135.2	342	atG/atT																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872963	136872963	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	85	727	0	ENST00000241393.3:c.535G>C	p.Glu179Gln	p.E179Q	ENST00000241393	NM_003467.2	179	Gag/Cag																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735657	204735657	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	45	576	0	ENST00000302823.3:c.457+1G>T		p.X153_splice	ENST00000302823	NM_005214.4	153																																																																																
EIF4A2	1974	MSKCC	GRCh37	3	186503774	186503774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	57	521	0	ENST00000323963.5:c.451G>A	p.Glu151Lys	p.E151K	ENST00000323963		151	Gaa/Aaa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324621	31324621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	65	811	0	ENST00000412585.2:c.187G>A	p.Asp63Asn	p.D63N	ENST00000412585	NM_005514.6	63	Gac/Aac																																																																															
MET	4233	MSKCC	GRCh37	7	116339865	116339865	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	106	601	0	ENST00000397752.3:c.727G>C	p.Asp243His	p.D243H	ENST00000397752	NM_000245.2	243	Gat/Cat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874314	151874314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	32	519	0	ENST00000262189.6:c.8224G>A	p.Asp2742Asn	p.D2742N	ENST00000262189	NM_170606.2	2742	Gat/Aat																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229547	98229547	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	55	598	0	ENST00000331920.6:c.2411A>C	p.Tyr804Ser	p.Y804S	ENST00000331920	NM_000264.3	804	tAt/tCt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039359	47039359	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	96	872	0	ENST00000329236.7:c.751T>A	p.Ser251Thr	p.S251T	ENST00000329236	NM_001204466.1	251	Tcc/Acc																																																																															
MED12	9968	MSKCC	GRCh37	X	70342424	70342424	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	60	627	0	ENST00000374080.3:c.1315T>A	p.Trp439Arg	p.W439R	ENST00000374080		439	Tgg/Agg																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123504151	123504151	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0061512-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	25	402	0	ENST00000371139.4:c.327A>C	p.Arg109Ser	p.R109S	ENST00000371139	NM_001114937.2	109	agA/agC																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31237842	31237842	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs774464615		P-0061513-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	204	591	0	ENST00000376228.5:c.916A>G	p.Ile306Val	p.I306V	ENST00000376228	NM_002117.5	306	Atc/Gtc																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811693	102811693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			790	80	844	0	ENST00000307046.8:c.491G>A	p.Gly164Glu	p.G164E	ENST00000307046	NM_001111285.1	164	gGg/gAg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485136	57485387	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGTGTATGGCTTCCACTCTTGCTGGCTGTTCATTGCGGTGGTTCTTTTTCAAACGGTCAGGCTGAAAACCCCCATCCCCCTCCCACCACCAAACCATAAAGGATCTATAAGAGAAGCAAGAAAAACGCACTCCCACTAATTCTCATATGGAAAAATCAGGGTTTTGAAGACTTCAGGAGCTACAGAGATGCTAGCACCCCAGCTCTGCTTGAATTTTAAATTACATTAATATGTATTCCCTTTTTATATA	GGTGTGTATGGCTTCCACTCTTGCTGGCTGTTCATTGCGGTGGTTCTTTTTCAAACGGTCAGGCTGAAAACCCCCATCCCCCTCCCACCACCAAACCATAAAGGATCTATAAGAGAAGCAAGAAAAACGCACTCCCACTAATTCTCATATGGAAAAATCAGGGTTTTGAAGACTTCAGGAGCTACAGAGATGCTAGCACCCCAGCTCTGCTTGAATTTTAAATTACATTAATATGTATTCCCTTTTTATATA	-			P-0061520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			772	48	676	0	ENST00000371085.3:c.970+1_971-1del		p.X324_splice	ENST00000371085	NM_000516.4	324																																																																																
TP53	7157	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs587780074		P-0061520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	240	582	0	ENST00000269305.4:c.737T>G	p.Met246Arg	p.M246R	ENST00000269305	NM_001126112.2	246	aTg/aGg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485456	57485736	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGAGTCGAGCCTGTCTTTAGTTTCCTCTCTTGTTCCTCCTCTTTTTCTCATGGATGTAAATTTACTTAATTCCAAATTCAGGGGTTCAGCTACCCAGTTCCATGGTTTTAGTTCACGCACATCCAGTGTGGATTTGAGCTCTTTGCGCCCCTCTTTTTGCTTTTGTTTTCATATGACATCAGAGGCTGGCTGACAGCCGTCCCTGGTAGGTGTCCCCATCAGGGATAGGGTGGTTCCTGGCGAGGGTGTCACTGACAAGTCCCCTTGTTTGTGCCCGCA	GGTGAGTCGAGCCTGTCTTTAGTTTCCTCTCTTGTTCCTCCTCTTTTTCTCATGGATGTAAATTTACTTAATTCCAAATTCAGGGGTTCAGCTACCCAGTTCCATGGTTTTAGTTCACGCACATCCAGTGTGGATTTGAGCTCTTTGCGCCCCTCTTTTTGCTTTTGTTTTCATATGACATCAGAGGCTGGCTGACAGCCGTCCCTGGTAGGTGTCCCCATCAGGGATAGGGTGGTTCCTGGCGAGGGTGTCACTGACAAGTCCCCTTGTTTGTGCCCGCA	-			P-0061520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			765	56	592	0	ENST00000371085.3:c.1038+1_1039-1del		p.X346_splice	ENST00000371085	NM_000516.4	346																																																																																
SYK	6850	MSKCC	GRCh37	9	93639960	93639960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	128	693	0	ENST00000375746.1:c.1289C>T	p.Pro430Leu	p.P430L	ENST00000375746	NM_001174167.1	430	cCg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447295	49447295	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	194	764	1	ENST00000301067.7:c.803G>A	p.Trp268Ter	p.W268*	ENST00000301067	NM_003482.3	268	tGg/tAg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32944653	32944653	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	178	513	0	ENST00000380152.3:c.8446G>T	p.Gly2816Cys	p.G2816C	ENST00000380152		2816	Ggt/Tgt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78811736	78811736	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0061520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	111	566	0	ENST00000306801.3:c.1151T>A	p.Leu384Gln	p.L384Q	ENST00000306801	NM_020761.2	384	cTg/cAg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31472225	31472225	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0061520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			789	78	639	0	ENST00000344624.3:c.2186A>T	p.Glu729Val	p.E729V	ENST00000344624		729	gAg/gTg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35861050	35861051	+	missense_variant	Missense_Mutation	DNP	AG	AG	TT			P-0061520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	184	512	0	ENST00000303115.3:c.179_180delinsTT	p.Glu60Val	p.E60V	ENST00000303115	NM_002185.3	60	gAG/gTT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509436	106509436	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200175951		P-0061520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	501	745	0	ENST00000359195.3:c.1430G>T	p.Arg477Leu	p.R477L	ENST00000359195	NM_002649.2	477	cGt/cTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974809	21974809	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061523-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	117	969	0	ENST00000304494.5:c.18del	p.Ser7AlafsTer19	p.S7Afs*19	ENST00000304494	NM_000077.4	6	ggG/gg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891277	101891277	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061523-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	75	658	0	ENST00000374994.4:c.238C>T	p.Arg80Ter	p.R80*	ENST00000374994	NM_004612.2	80	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578234	7578234	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0061523-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	137	893	0	ENST00000269305.4:c.615T>G	p.Tyr205Ter	p.Y205*	ENST00000269305	NM_001126112.2	205	taT/taG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0061523-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	76	431	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0061527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	34	782	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0061527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	22	336	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552730	106552730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061527-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	44	572	0	ENST00000369096.4:c.695G>T	p.Ser232Ile	p.S232I	ENST00000369096	NM_001198.3	232	aGc/aTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121110	11121110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061562-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	159	569	0	ENST00000344626.4:c.2177G>A	p.Arg726His	p.R726H	ENST00000344626	NM_003072.3	726	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0061563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	162	610	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563167	21563167	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371775408		P-0061563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	118	630	0	ENST00000382592.4:c.752C>T	p.Ala251Val	p.A251V	ENST00000382592	NM_014572.2	251	gCg/gTg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258744	115258744	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121434596		P-0061563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	64	414	0	ENST00000369535.4:c.38G>T	p.Gly13Val	p.G13V	ENST00000369535	NM_002524.4	13	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112174472	112174475	+	frameshift_variant	Frame_Shift_Del	DEL	AAAC	AAAC	-			P-0061563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	31	469	0	ENST00000257430.4:c.3184_3187del	p.Gln1062ValfsTer63	p.Q1062Vfs*63	ENST00000257430	NM_000038.5	1061	AAACaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175757	112175758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0061563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	68	545	0	ENST00000257430.4:c.4467dup	p.His1490ThrfsTer24	p.H1490Tfs*24	ENST00000257430	NM_000038.5	1489	tta/ttAa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981777	201981778	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0061563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	134	601	0	ENST00000359651.3:c.492dup	p.Phe165LeufsTer31	p.F165Lfs*31	ENST00000359651		163	agc/agCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0061563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	32	350	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923028	39923028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	181	551	0	ENST00000378444.4:c.3680G>T	p.Gly1227Val	p.G1227V	ENST00000378444	NM_001123385.1	1227	gGc/gTc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696638	47696638	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	166	590	0	ENST00000347630.2:c.310T>A	p.Phe104Ile	p.F104I	ENST00000347630	NM_001007230.1	104	Ttc/Atc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061204	38061204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	67	669	0	ENST00000250448.2:c.785G>T	p.Arg262Leu	p.R262L	ENST00000250448	NM_004496.3	262	cGc/cTc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940061	49940061	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1440811627		P-0061578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			761	118	909	0	ENST00000296474.3:c.982C>T	p.Pro328Ser	p.P328S	ENST00000296474	NM_002447.2	328	Cca/Tca																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114203	115114204	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0061578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	256	676	0	ENST00000257566.3:c.1013dup	p.Ser339ValfsTer4	p.S339Vfs*4	ENST00000257566	NM_016569.3	338	gag/gaAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578244	7578244	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	206	790	0	ENST00000269305.4:c.605del	p.Arg202LeufsTer45	p.R202Lfs*45	ENST00000269305	NM_001126112.2	202	cGt/ct																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103720	47103720	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0061578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			814	47	672	0	ENST00000409792.3:c.6226A>T	p.Lys2076Ter	p.K2076*	ENST00000409792	NM_014159.6	2076	Aaa/Taa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs193920894		P-0061581-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	236	557	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841048	15841048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061581-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	205	360	0	ENST00000307771.7:c.1132C>T	p.Arg378Trp	p.R378W	ENST00000307771	NM_005089.3	378	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577586	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCCATGCAGGAACTGTTACACATGTAGTTGTAGTGGA	CCGCCCATGCAGGAACTGTTACACATGTAGTTGTAGTGGA	-			P-0061581-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	156	608	0	ENST00000269305.4:c.695_734del	p.Ile232ThrfsTer2	p.I232Tfs*2	ENST00000269305	NM_001126112.2	232	aTCCACTACAACTACATGTGTAACAGTTCCTGCATGGGCGGc/ac																																																																															
SMO	6608	MSKCC	GRCh37	7	128849164	128849168	+	frameshift_variant	Frame_Shift_Del	DEL	CATTA	CATTA	-			P-0061581-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	499	632	2	ENST00000249373.3:c.1393_1397del	p.Ile465LeufsTer13	p.I465Lfs*13	ENST00000249373	NM_005631.4	464	ctCATTAcc/ctcc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860515	151860515	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061581-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1074	242	788	0	ENST00000262189.6:c.10147G>T	p.Val3383Leu	p.V3383L	ENST00000262189	NM_170606.2	3383	Gta/Tta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0061583-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	197	812	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374882	45374882	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs776149698		P-0061583-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	93	598	0	ENST00000262160.6:c.961C>T	p.Arg321Ter	p.R321*	ENST00000262160	NM_005901.5	321	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174129	112174135	+	frameshift_variant	Frame_Shift_Del	DEL	ATGTTCT	ATGTTCT	-			P-0061583-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	130	580	0	ENST00000257430.4:c.2841_2847del	p.Ser948LeufsTer5	p.S948Lfs*5	ENST00000257430	NM_000038.5	946	acATGTTCT/ac																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061583-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	81	636	2	ENST00000257430.4:c.4469del	p.His1490LeufsTer17	p.H1490Lfs*17	ENST00000257430	NM_000038.5	1490	cAt/ct																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157150530	157150530	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061583-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	127	603	0	ENST00000346085.5:c.1713del	p.Gly572GlufsTer21	p.G572Efs*21	ENST00000346085	NM_020732.3	571	gCc/gc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0061585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	138	292	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0061585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	106	390	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120062	70120062	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	64	489	0	ENST00000245479.2:c.1067del	p.Pro356ArgfsTer27	p.P356Rfs*27	ENST00000245479	NM_000346.3	355	gCc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577517	7577518	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGATGG			P-0061585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	202	589	0	ENST00000269305.4:c.758_763dup	p.Thr253_Ile254dup	p.T253_I254dup	ENST00000269305	NM_001126112.2	253	atc/aCCATCAtc																																																																															
NF1	4763	MSKCC	GRCh37	17	29533261	29533261	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786202145		P-0061585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	215	597	2	ENST00000358273.4:c.1264G>A	p.Ala422Thr	p.A422T	ENST00000358273	NM_001042492.2	422	Gca/Aca																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023494	31023494	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0061585-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			755	240	689	0	ENST00000375687.4:c.2979del	p.Pro994LeufsTer30	p.P994Lfs*30	ENST00000375687	NM_015338.5	993	agT/ag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0061593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	71	550	4	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0061593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	60	512	1	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0061593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	85	722	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0061593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	38	333	5	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0061593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	56	663	3	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129867	55129867	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373126818		P-0061593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	56	608	7	ENST00000257290.5:c.401C>T	p.Thr134Met	p.T134M	ENST00000257290	NM_006206.4	134	aCg/aTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1422891742		P-0061593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	53	515	2	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140434564	140434564	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1481562268		P-0061593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	60	400	4	ENST00000288602.6:c.2134G>A	p.Ala712Thr	p.A712T	ENST00000288602	NM_004333.4	712	Gcc/Acc																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226253371	226253371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061593-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	32	338	2	ENST00000366813.1:c.143C>T	p.Ala48Val	p.A48V	ENST00000366813		48	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0061598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	71	386	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3830790	3830790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	61	643	0	ENST00000262367.5:c.1766G>A	p.Arg589Lys	p.R589K	ENST00000262367	NM_004380.2	589	aGg/aAg																																																																															
SDHA	6389	MSKCC	GRCh37	5	235258	235258	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0061598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	21	348	0	ENST00000264932.6:c.1065-1G>C		p.X355_splice	ENST00000264932	NM_004168.2	355																																																																																
LATS1	9113	MSKCC	GRCh37	6	149983321	149983327	+	frameshift_variant	Frame_Shift_Del	DEL	AGGACTG	AGGACTG	-			P-0061598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	28	502	0	ENST00000253339.5:c.2931_2937del	p.Ser978LysfsTer17	p.S978Kfs*17	ENST00000253339		977	ctCAGTCCT/ct																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151947012	151947012	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0061598-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	26	371	0	ENST00000262189.6:c.1762C>T	p.Gln588Ter	p.Q588*	ENST00000262189	NM_170606.2	588	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	85	470	0	ENST00000269305.4:c.379T>A	p.Ser127Thr	p.S127T	ENST00000269305	NM_001126112.2	127	Tcc/Acc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291798	15291798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759991207		P-0061601-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1103	80	591	0	ENST00000263388.2:c.2968G>A	p.Glu990Lys	p.E990K	ENST00000263388	NM_000435.2	990	Gag/Aag																																																																															
KDR	3791	MSKCC	GRCh37	4	55955113	55955113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	243	348	0	ENST00000263923.4:c.3432C>A	p.His1144Gln	p.H1144Q	ENST00000263923	NM_002253.2	1144	caC/caA																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155333	185155333	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	169	412	0	ENST00000265026.3:c.574G>T	p.Val192Leu	p.V192L	ENST00000265026	NM_004721.4	192	Gtg/Ttg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041022	47041022	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	681	579	0	ENST00000329236.7:c.1318C>T	p.Gln440Ter	p.Q440*	ENST00000329236	NM_001204466.1	440	Cag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108236215	108236215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	308	423	1	ENST00000278616.4:c.9151G>A	p.Gly3051Arg	p.G3051R	ENST00000278616	NM_000051.3	3051	Gga/Aga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0061605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	235	274	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46597560	46597561	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0061605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	326	352	0	ENST00000262741.5:c.64_65insGG	p.Tyr22TrpfsTer6	p.Y22Wfs*6	ENST00000262741	NM_003629.3	22	tat/tGGat																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551556	150551556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1278	90	570	0	ENST00000369026.2:c.451G>A	p.Gly151Ser	p.G151S	ENST00000369026	NM_021960.4	151	Ggt/Agt																																																																															
USP8	9101	MSKCC	GRCh37	15	50769515	50769622	+	inframe_deletion	In_Frame_Del	DEL	AACCTGCTGCCCAGACGCCACCTGCATCTATAGAAGTAGATGAAAATATAGAATTGATAAGTGGTCAAAATGAGAGAATGGGACCACTGAATATATCAACTCCAGTTG	AACCTGCTGCCCAGACGCCACCTGCATCTATAGAAGTAGATGAAAATATAGAATTGATAAGTGGTCAAAATGAGAGAATGGGACCACTGAATATATCAACTCCAGTTG	-			P-0061605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	33	299	0	ENST00000307179.4:c.1041_1148del	p.Ala348_Pro383del	p.A348_P383del	ENST00000307179		346	aAACCTGCTGCCCAGACGCCACCTGCATCTATAGAAGTAGATGAAAATATAGAATTGATAAGTGGTCAAAATGAGAGAATGGGACCACTGAATATATCAACTCCAGTTGaa/aaa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348104	348104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	53	591	0	ENST00000262320.3:c.1402G>A	p.Glu468Lys	p.E468K	ENST00000262320	NM_003502.3	468	Gag/Aag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627232	37627232	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	109	418	0	ENST00000447079.4:c.1147A>T	p.Ser383Cys	p.S383C	ENST00000447079	NM_015083.1	383	Agt/Tgt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56409145	56409145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			72	75	221	0	ENST00000348428.3:c.1652G>T	p.Arg551Leu	p.R551L	ENST00000348428	NM_006785.3	551	cGa/cTa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470964	25470964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	279	596	0	ENST00000264709.3:c.797G>T	p.Gly266Val	p.G266V	ENST00000264709	NM_175629.2	266	gGg/gTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11301713	11301713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	133	371	0	ENST00000361445.4:c.1438G>T	p.Ala480Ser	p.A480S	ENST00000361445	NM_004958.3	480	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578484	7578485	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0061615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	356	690	0	ENST00000269305.4:c.445dup	p.Ser149PhefsTer32	p.S149Ffs*32	ENST00000269305	NM_001126112.2	149	tcc/tTcc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133806	55133806	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77524207		P-0061615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	99	504	0	ENST00000257290.5:c.1019G>A	p.Arg340Gln	p.R340Q	ENST00000257290	NM_006206.4	340	cGg/cAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144509	11144509	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587778685		P-0061615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	106	444	0	ENST00000344626.4:c.3841G>A	p.Val1281Ile	p.V1281I	ENST00000344626	NM_003072.3	1281	Gtc/Atc																																																																															
ALB	213	MSKCC	GRCh37	4	74279198	74279198	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	95	451	0	ENST00000295897.4:c.905G>T	p.Cys302Phe	p.C302F	ENST00000295897	NM_000477.5	302	tGc/tTc																																																																															
ATM	472	MSKCC	GRCh37	11	108158406	108158406	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	66	364	0	ENST00000278616.4:c.4073G>C	p.Ser1358Thr	p.S1358T	ENST00000278616	NM_000051.3	1358	aGt/aCt																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926885	112926885	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0061615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	57	470	0	ENST00000351677.2:c.1505C>G	p.Ser502Ter	p.S502*	ENST00000351677	NM_002834.3	502	tCa/tGa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593398	48593403	+	inframe_deletion	In_Frame_Del	DEL	AGGCAA	AGGCAA	-			P-0061615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	45	352	0	ENST00000342988.3:c.1152_1157del	p.Lys385_Gly386del	p.K385_G386del	ENST00000342988	NM_005359.5	383	atAGGCAAa/ata																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096012	178096012	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	85	677	0	ENST00000397062.3:c.1319del	p.Pro440HisfsTer31	p.P440Hfs*31	ENST00000397062	NM_006164.4	440	cCa/ca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178948026	178948027	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0061615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	65	334	0	ENST00000263967.3:c.2802dup	p.Gly935TrpfsTer14	p.G935Wfs*14	ENST00000263967	NM_006218.2	933	gat/gaTt																																																																															
MED12	9968	MSKCC	GRCh37	X	70361162	70361162	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0061615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	18	383	0	ENST00000374080.3:c.6350A>C	p.Gln2117Pro	p.Q2117P	ENST00000374080		2117	cAg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0061618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	283	542	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777134	9777134	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1445282622		P-0061618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	278	520	0	ENST00000377346.4:c.898C>T	p.Arg300Cys	p.R300C	ENST00000377346	NM_005026.3	300	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0061618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	121	287	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIM1	5292	MSKCC	GRCh37	6	37139215	37139215	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061618-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1206	73	504	0	ENST00000373509.5:c.555C>G	p.Ile185Met	p.I185M	ENST00000373509	NM_002648.3	185	atC/atG																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs377622327		P-0061619-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	197	680	0	ENST00000324856.7:c.3972C>A	p.Tyr1324Ter	p.Y1324*	ENST00000324856	NM_006015.4	1324	taC/taA																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			702	60	711	3	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0061620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	57	530	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36212425	36212425	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1321602732		P-0061620-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			769	69	705	0	ENST00000222270.7:c.2176G>C	p.Ala726Pro	p.A726P	ENST00000222270	NM_014727.1	726	Gct/Cct																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937367	32937367	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	142	425	0	ENST00000380152.3:c.8029del	p.Glu2677LysfsTer17	p.E2677Kfs*17	ENST00000380152		2676	atG/at																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225598	2225598	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	46	572	0	ENST00000326181.6:c.1601A>G	p.Tyr534Cys	p.Y534C	ENST00000326181	NM_032271.2	534	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0061621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	399	603	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29496935	29496935	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	123	242	0	ENST00000358273.4:c.506A>T	p.Glu169Val	p.E169V	ENST00000358273	NM_001042492.2	169	gAa/gTa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883132	37883132	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	211	558	0	ENST00000269571.5:c.3035A>T	p.Asp1012Val	p.D1012V	ENST00000269571		1012	gAt/gTt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212576831	212576831	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	17	360	0	ENST00000342788.4:c.1068C>G	p.Phe356Leu	p.F356L	ENST00000342788	NM_005235.2	356	ttC/ttG																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62320962	62320962	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	G			P-0061621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	124	554	0	ENST00000482936.1:c.1986C>G	p.Phe662Leu	p.F662L	ENST00000482936		662	ttC/ttG																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933255	49933255	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	160	621	0	ENST00000296474.3:c.2855G>C	p.Gly952Ala	p.G952A	ENST00000296474	NM_002447.2	952	gGg/gCg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52595807	52595816	+	frameshift_variant	Frame_Shift_Del	DEL	TCTCAAGATT	TCTCAAGATT	-			P-0061621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	31	504	0	ENST00000394830.3:c.4099_4108del	p.Asn1367GlnfsTer10	p.N1367Qfs*10	ENST00000394830	NM_018313.4	1367	AATCTTGAGAca/ca																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205161	128205161	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1357122451		P-0061621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	25	643	0	ENST00000341105.2:c.280G>A	p.Gly94Ser	p.G94S	ENST00000341105	NM_032638.4	94	Ggt/Agt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467968	66467968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	102	362	0	ENST00000273854.3:c.301G>T	p.Val101Leu	p.V101L	ENST00000273854	NM_004439.5	101	Gta/Tta																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542574	187542574	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	158	473	0	ENST00000441802.2:c.5166G>T	p.Gln1722His	p.Q1722H	ENST00000441802	NM_005245.3	1722	caG/caT																																																																															
NPM1	4869	MSKCC	GRCh37	5	170832346	170832346	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			83	27	136	0	ENST00000296930.5:c.710C>G	p.Thr237Arg	p.T237R	ENST00000296930	NM_002520.6	237	aCa/aGa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001323	150001323	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	30	448	0	ENST00000253339.5:c.2281G>C	p.Asp761His	p.D761H	ENST00000253339		761	Gac/Cac																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527998	157527998	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	115	625	0	ENST00000346085.5:c.5723A>T	p.Gln1908Leu	p.Q1908L	ENST00000346085	NM_020732.3	1908	cAg/cTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845133	151845133	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	115	477	0	ENST00000262189.6:c.13879G>C	p.Asp4627His	p.D4627H	ENST00000262189	NM_170606.2	4627	Gac/Cac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878842	151878842	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	77	486	0	ENST00000262189.6:c.6103C>G	p.Pro2035Ala	p.P2035A	ENST00000262189	NM_170606.2	2035	Cct/Gct																																																																															
STAG2	10735	MSKCC	GRCh37	X	123200217	123200217	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061621-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	54	152	0	ENST00000218089.9:c.2196C>G	p.His732Gln	p.H732Q	ENST00000218089	NM_001042749.1	732	caC/caG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0060998-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			797	2157	494	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439848	51439848	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060998-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			736	181	522	0	ENST00000262662.1:c.413A>G	p.Asp138Gly	p.D138G	ENST00000262662		138	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579491	7579492	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0060998-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			528	551	609	0	ENST00000269305.4:c.194_195dup	p.Met66GlufsTer58	p.M66Efs*58	ENST00000269305	NM_001126112.2	65	-/GA																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16001732	16001732	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0060998-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			435	81	425	0	ENST00000268712.3:c.2769T>A	p.Asn923Lys	p.N923K	ENST00000268712	NM_006311.3	923	aaT/aaA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900071	151900071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060998-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			268	28	398	0	ENST00000262189.6:c.4040G>A	p.Arg1347Lys	p.R1347K	ENST00000262189	NM_170606.2	1347	aGa/aAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767345		P-0061385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	35	510	2	ENST00000342988.3:c.1055G>A	p.Gly352Glu	p.G352E	ENST00000342988	NM_005359.5	352	gGa/gAa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0061385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	44	480	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448271	56448271	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0061385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	84	535	0	ENST00000407977.2:c.375+1G>A		p.X125_splice	ENST00000407977		125																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0061385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	95	304	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911586	32911586	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0061385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	30	342	0	ENST00000380152.3:c.3094A>C	p.Lys1032Gln	p.K1032Q	ENST00000380152		1032	Aaa/Caa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713263	30713263	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	50	565	0	ENST00000359013.4:c.663G>C	p.Lys221Asn	p.K221N	ENST00000359013	NM_001024847.2	221	aaG/aaC																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93955022	93955022	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061385-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	24	287	0	ENST00000369303.4:c.2876C>G	p.Thr959Ser	p.T959S	ENST00000369303	NM_004440.3	959	aCt/aGt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412252	139412252	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057523819		P-0061386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	80	485	0	ENST00000277541.6:c.1393G>A	p.Ala465Thr	p.A465T	ENST00000277541	NM_017617.3	465	Gcc/Acc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278070	18278070	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs886041602		P-0061386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	59	451	0	ENST00000222254.8:c.1690A>G	p.Lys564Glu	p.K564E	ENST00000222254	NM_005027.3	564	Aag/Gag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060835	38060889	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGACTCGTGGGGTGCCAAGCCGTGTGCCGGGTGAGAGGCGGGCACAGAGGCCA	TGGGACTCGTGGGGTGCCAAGCCGTGTGCCGGGTGAGAGGCGGGCACAGAGGCCA	-			P-0061386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	99	621	1	ENST00000250448.2:c.1100_1154del	p.Leu367ArgfsTer4	p.L367Rfs*4	ENST00000250448	NM_004496.3	367	cTGGCCTCTGTGCCCGCCTCTCACCCGGCACACGGCTTGGCACCCCACGAGTCCCAg/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577563	7577573	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	TGTTACACATG	TGTTACACATG	-			P-0061386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	101	398	0	ENST00000269305.4:c.708_718del	p.Tyr236Ter	p.Y236*	ENST00000269305	NM_001126112.2	236	taCATGTGTAACAgt/tagt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956595	93956595	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	95	390	0	ENST00000369303.4:c.2641C>G	p.Pro881Ala	p.P881A	ENST00000369303	NM_004440.3	881	Cca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0061387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			768	528	549	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440757	56440757	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774211426		P-0061387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	516	570	1	ENST00000407977.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000407977		154	cCg/cTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	186	556	0	ENST00000304494.5:c.132C>A	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/taA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0061387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	130	245	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916913	178916924	+	inframe_deletion	In_Frame_Del	DEL	AGTAATTGAACC	AGTAATTGAACC	-			P-0061387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	17	176	0	ENST00000263967.3:c.304_315del	p.Ile102_Val105del	p.I102_V105del	ENST00000263967	NM_006218.2	100	aaAGTAATTGAACCa/aaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424494	49424494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			944	167	485	0	ENST00000301067.7:c.13729G>A	p.Ala4577Thr	p.A4577T	ENST00000301067	NM_003482.3	4577	Gcc/Acc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967252	25967252	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061387-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			778	137	506	2	ENST00000435504.4:c.1954A>G	p.Thr652Ala	p.T652A	ENST00000435504		652	Aca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0061391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	139	488	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5222730	5222731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs766222935		P-0061391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	89	426	0	ENST00000357368.4:c.3072dup	p.Val1025ArgfsTer34	p.V1025Rfs*34	ENST00000357368	NM_002850.3	1024	-/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0061391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	63	247	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89880959	89880959	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	64	303	0	ENST00000389301.3:c.252G>T	p.Glu84Asp	p.E84D	ENST00000389301	NM_000135.2	84	gaG/gaT																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591936	48591941	+	inframe_deletion	In_Frame_Del	DEL	CTCTCC	CTCTCC	-			P-0061391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	97	438	0	ENST00000342988.3:c.1099_1104del	p.Leu367_Ser368del	p.L367_S368del	ENST00000342988	NM_005359.5	367	CTCTCC/-																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662448	117662448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	112	405	0	ENST00000368508.3:c.4929G>A	p.Met1643Ile	p.M1643I	ENST00000368508	NM_002944.2	1643	atG/atA																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974738	21974742	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCG	GCCCG	-			P-0061391-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	147	532	0	ENST00000304494.5:c.85_89del	p.Arg29AlafsTer13	p.R29Afs*13	ENST00000304494	NM_000077.4	29	CGGGCg/g																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0061459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	14	596	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185200218	185200218	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	16	405	0	ENST00000265026.3:c.2877del	p.Lys959AsnfsTer19	p.K959Nfs*19	ENST00000265026	NM_004721.4	959	Aaa/aa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0061460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	41	320	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0061460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	82	556	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
RB1	5925	MSKCC	GRCh37	13	48955383	48955383	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0061460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	35	296	0	ENST00000267163.4:c.1499G>T	p.Arg500Ile	p.R500I	ENST00000267163	NM_000321.2	500	aGa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0061461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	143	429	0	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																																
DDR2	4921	MSKCC	GRCh37	1	162741910	162741910	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	107	536	0	ENST00000367921.3:c.1601G>T	p.Gly534Val	p.G534V	ENST00000367921	NM_006182.2	534	gGa/gTa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	438084	438084	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs758504046		P-0061461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	98	505	0	ENST00000399788.2:c.1885G>T	p.Val629Leu	p.V629L	ENST00000399788	NM_001042603.1	629	Gtg/Ttg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17948000	17948000	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	67	429	0	ENST00000458235.1:c.1724T>C	p.Leu575Ser	p.L575S	ENST00000458235	NM_000215.3	575	tTg/tCg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47425088	47425088	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	120	556	0	ENST00000404338.3:c.3158del	p.Lys1053ArgfsTer7	p.K1053Rfs*7	ENST00000404338	NM_004491.4	1052	acA/ac																																																																															
RHOA	387	MSKCC	GRCh37	3	49400011	49400011	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			72	129	472	0	ENST00000418115.1:c.326A>G	p.Asn109Ser	p.N109S	ENST00000418115	NM_001664.2	109	aAc/aGc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867494	35867494	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	159	447	0	ENST00000303115.3:c.308G>T	p.Gly103Val	p.G103V	ENST00000303115	NM_002185.3	103	gGa/gTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151851393	151851393	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776094080		P-0061461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	58	510	0	ENST00000262189.6:c.12098C>T	p.Pro4033Leu	p.P4033L	ENST00000262189	NM_170606.2	4033	cCg/cTg																																																																															
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1023835002		P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	197	485	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	169	374	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs483352822		P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	249	512	0	ENST00000368323.3:c.270G>A	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atA																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99250978	99250978	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	249	571	0	ENST00000268035.6:c.282G>C	p.Glu94Asp	p.E94D	ENST00000268035	NM_000875.3	94	gaG/gaC																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189912	66189912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	161	410	0	ENST00000273854.3:c.3034C>T	p.Leu1012Phe	p.L1012F	ENST00000273854	NM_004439.5	1012	Ctt/Ttt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220707	1220707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	226	397	0	ENST00000326873.7:c.725G>T	p.Gly242Val	p.G242V	ENST00000326873	NM_000455.4	242	gGg/gTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602822	10602822	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	295	562	0	ENST00000171111.5:c.756G>T	p.Trp252Cys	p.W252C	ENST00000171111	NM_203500.1	252	tgG/tgT																																																																															
PMS2	5395	MSKCC	GRCh37	7	6048638	6048638	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs372539944		P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			775	290	597	0	ENST00000265849.7:c.13G>C	p.Glu5Gln	p.E5Q	ENST00000265849	NM_000535.5	5	Gag/Cag																																																																															
TET2	54790	MSKCC	GRCh37	4	106158205	106158205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	262	519	0	ENST00000380013.4:c.3106C>T	p.His1036Tyr	p.H1036Y	ENST00000380013	NM_001127208.2	1036	Cac/Tac																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437376	110437376	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776945626		P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	172	293	0	ENST00000375856.3:c.1025C>T	p.Ser342Leu	p.S342L	ENST00000375856	NM_003749.2	342	tCg/tTg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965421	18965421	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	140	333	0	ENST00000262803.5:c.1168G>C	p.Glu390Gln	p.E390Q	ENST00000262803	NM_002911.3	390	Gag/Cag																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876536	35876536	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	109	528	0	ENST00000303115.3:c.1328C>G	p.Ser443Ter	p.S443*	ENST00000303115	NM_002185.3	443	tCa/tGa																																																																															
EP300	2033	MSKCC	GRCh37	22	41553172	41553172	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	160	411	0	ENST00000263253.7:c.3262-1G>C		p.X1088_splice	ENST00000263253	NM_001429.3	1088																																																																																
RIT1	6016	MSKCC	GRCh37	1	155874221	155874221	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			745	256	516	0	ENST00000368323.3:c.310G>C	p.Asp104His	p.D104H	ENST00000368323	NM_006912.5	104	Gat/Cat																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64126729	64126729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	172	366	0	ENST00000334205.4:c.22G>A	p.Glu8Lys	p.E8K	ENST00000334205	NM_003942.2	8	Gag/Aag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127775	64127775	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs905329669		P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	204	428	0	ENST00000334205.4:c.268G>T	p.Glu90Ter	p.E90*	ENST00000334205	NM_003942.2	90	Gag/Tag																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514274	69514274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	248	550	0	ENST00000294312.3:c.407C>A	p.Ser136Tyr	p.S136Y	ENST00000294312	NM_005117.2	136	tCc/tAc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90630756	90630756	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs780131378		P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	272	547	0	ENST00000330062.3:c.730T>C	p.Trp244Arg	p.W244R	ENST00000330062	NM_002168.2	244	Tgg/Cgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29556931	29556931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	34	134	0	ENST00000358273.4:c.2929G>A	p.Glu977Lys	p.E977K	ENST00000358273	NM_001042492.2	977	Gaa/Aaa																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73775238	73775238	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	292	592	0	ENST00000254810.4:c.18G>C	p.Gln6His	p.Q6H	ENST00000254810	NM_005324.3	6	caG/caC																																																																															
AXL	558	MSKCC	GRCh37	19	41758844	41758844	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	242	518	0	ENST00000301178.4:c.1898T>A	p.Leu633His	p.L633H	ENST00000301178	NM_021913.4	633	cTc/cAc																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22160245	22160245	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	224	518	0	ENST00000215832.6:c.386T>C	p.Phe129Ser	p.F129S	ENST00000215832	NM_002745.4	129	tTt/tCt																																																																															
ALB	213	MSKCC	GRCh37	4	74274368	74274368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	182	467	0	ENST00000295897.4:c.328G>A	p.Glu110Lys	p.E110K	ENST00000295897	NM_000477.5	110	Gaa/Aaa																																																																															
TET2	54790	MSKCC	GRCh37	4	106158199	106158199	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1405763806		P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	270	525	0	ENST00000380013.4:c.3100C>T	p.Gln1034Ter	p.Q1034*	ENST00000380013	NM_001127208.2	1034	Cag/Tag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163297	32163297	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	270	580	0	ENST00000375023.3:c.5929G>T	p.Glu1977Ter	p.E1977*	ENST00000375023	NM_004557.3	1977	Gag/Tag																																																																															
RAD21	5885	MSKCC	GRCh37	8	117874120	117874120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	184	355	0	ENST00000297338.2:c.334G>A	p.Glu112Lys	p.E112K	ENST00000297338	NM_006265.2	112	Gaa/Aaa																																																																															
RXRA	6256	MSKCC	GRCh37	9	137325947	137325947	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0061463-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	233	366	0	ENST00000481739.1:c.1136-1G>T		p.X379_splice	ENST00000481739	NM_002957.4	379																																																																																
LATS1	9113	MSKCC	GRCh37	6	150004255	150004255	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1314146200		P-0061468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	106	426	0	ENST00000253339.5:c.1970G>A	p.Arg657His	p.R657H	ENST00000253339		657	cGt/cAt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257173	16257176	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0061468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	134	509	0	ENST00000375759.3:c.4441_4444del	p.Glu1481ArgfsTer14	p.E1481Rfs*14	ENST00000375759	NM_015001.2	1480	AAAGaa/aa																																																																															
ATM	472	MSKCC	GRCh37	11	108183151	108183151	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	151	369	0	ENST00000278616.4:c.5932G>C	p.Glu1978Gln	p.E1978Q	ENST00000278616	NM_000051.3	1978	Gaa/Caa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061010	38061011	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0061468-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	129	525	0	ENST00000250448.2:c.977_978dup	p.Gly327ProfsTer24	p.G327Pfs*24	ENST00000250448	NM_004496.3	326	-/CC																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	186	534	2	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574005	7574005	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	163	356	0	ENST00000269305.4:c.1022T>C	p.Phe341Ser	p.F341S	ENST00000269305	NM_001126112.2	341	tTc/tCc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2208944	2208944	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	127	284	0	ENST00000398665.3:c.974A>G	p.Tyr325Cys	p.Y325C	ENST00000398665	NM_032482.2	325	tAt/tGt																																																																															
ARAF	369	MSKCC	GRCh37	X	47426127	47426127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			744	193	498	0	ENST00000377045.4:c.647C>G	p.Pro216Arg	p.P216R	ENST00000377045	NM_001654.4	216	cCc/cGc																																																																															
RB1	5925	MSKCC	GRCh37	13	49047494	49047494	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0061471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	58	285	0	ENST00000267163.4:c.2490-2A>T		p.X830_splice	ENST00000267163	NM_000321.2	830																																																																																
WT1	7490	MSKCC	GRCh37	11	32414266	32414266	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	150	369	0	ENST00000332351.3:c.1285G>T	p.Glu429Ter	p.E429*	ENST00000332351	NM_024426.4	429	Gaa/Taa																																																																															
MAD2L2	10459	MSKCC	GRCh37	1	11740433	11740433	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0061471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	175	391	0	ENST00000235310.3:c.136A>C	p.Lys46Gln	p.K46Q	ENST00000235310		46	Aag/Cag																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429829	78429830	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0061471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	118	431	0	ENST00000370768.2:c.958_959del	p.Glu320LysfsTer30	p.E320Kfs*30	ENST00000370768	NM_003902.3	320	GAa/a																																																																															
HIST2H3D	653604	MSKCC	GRCh37	1	149784837	149784837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	58	328	0	ENST00000331491.1:c.400G>A	p.Glu134Lys	p.E134K	ENST00000331491	NM_001123375.2	134	Gag/Aag																																																																															
NUF2	83540	MSKCC	GRCh37	1	163298057	163298057	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	47	360	0	ENST00000271452.3:c.238G>T	p.Glu80Ter	p.E80*	ENST00000271452	NM_145697.2	80	Gaa/Taa																																																																															
STK11	6794	MSKCC	GRCh37	19	1223046	1223046	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1405959130		P-0061471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	211	492	0	ENST00000326873.7:c.983C>G	p.Thr328Ser	p.T328S	ENST00000326873	NM_000455.4	328	aCc/aGc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498383	89498383	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	89	362	0	ENST00000336596.2:c.2355G>T	p.Lys785Asn	p.K785N	ENST00000336596	NM_005233.5	785	aaG/aaT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048885	180048886	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0061471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			708	167	498	1	ENST00000261937.6:c.1676_1677delinsAA	p.Thr559Lys	p.T559K	ENST00000261937	NM_182925.4	559	aCC/aAA																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965330	68965330	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0061471-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	52	317	0	ENST00000288368.4:c.944-2A>T		p.X315_splice	ENST00000288368	NM_024870.2	315																																																																																
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs786203436		P-0061472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	50	556	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac																																																																															
KDR	3791	MSKCC	GRCh37	4	55946137	55946137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	35	472	0	ENST00000263923.4:c.4042G>A	p.Gly1348Arg	p.G1348R	ENST00000263923	NM_002253.2	1348	Ggg/Agg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55136880	55136880	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514549		P-0061472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	21	300	0	ENST00000257290.5:c.1202C>T	p.Ala401Val	p.A401V	ENST00000257290	NM_006206.4	401	gCt/gTt																																																																															
CCND2	894	MSKCC	GRCh37	12	4409083	4409083	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1445439577		P-0061472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	35	436	0	ENST00000261254.3:c.778C>A	p.Gln260Lys	p.Q260K	ENST00000261254	NM_001759.3	260	Cag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141550	11141550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	38	544	0	ENST00000344626.4:c.3527G>T	p.Ser1176Ile	p.S1176I	ENST00000344626	NM_003072.3	1176	aGc/aTc																																																																															
ATR	545	MSKCC	GRCh37	3	142186892	142186892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	27	372	0	ENST00000350721.4:c.6571G>T	p.Val2191Leu	p.V2191L	ENST00000350721	NM_001184.3	2191	Gtg/Ttg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286220	66286220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	24	435	0	ENST00000273854.3:c.1466G>T	p.Trp489Leu	p.W489L	ENST00000273854	NM_004439.5	489	tGg/tTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187531127	187531128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0061472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	36	429	0	ENST00000441802.2:c.9895dup	p.His3299ProfsTer2	p.H3299Pfs*2	ENST00000441802	NM_005245.3	3299	cat/cCat																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707702	176707702	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	36	548	0	ENST00000439151.2:c.5759G>C	p.Cys1920Ser	p.C1920S	ENST00000439151	NM_022455.4	1920	tGc/tCc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402492	139402492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061472-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	30	482	2	ENST00000277541.6:c.3425G>A	p.Cys1142Tyr	p.C1142Y	ENST00000277541	NM_017617.3	1142	tGt/tAt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35875627	35875627	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369971728		P-0061474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	36	412	0	ENST00000303115.3:c.814G>A	p.Val272Ile	p.V272I	ENST00000303115	NM_002185.3	272	Gta/Ata																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417398	139417398	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	104	568	0	ENST00000277541.6:c.646G>T	p.Glu216Ter	p.E216*	ENST00000277541	NM_017617.3	216	Gag/Tag																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175996814	175996814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	81	371	0	ENST00000367669.3:c.1623G>T	p.Trp541Cys	p.W541C	ENST00000367669	NM_022457.5	541	tgG/tgT																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180397	94180397	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	37	396	0	ENST00000323929.3:c.1771C>G	p.Gln591Glu	p.Q591E	ENST00000323929	NM_005591.3	591	Caa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577516	7577516	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	81	431	0	ENST00000269305.4:c.765del	p.Thr256HisfsTer89	p.T256Hfs*89	ENST00000269305	NM_001126112.2	255	atC/at																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033210	69033210	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	78	369	0	ENST00000288368.4:c.3650A>T	p.His1217Leu	p.H1217L	ENST00000288368	NM_024870.2	1217	cAt/cTt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910860	32910860	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs398122746		P-0060952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	118	436	5	ENST00000380152.3:c.2368G>T	p.Glu790Ter	p.E790*	ENST00000380152		790	Gaa/Taa																																																																															
RB1	5925	MSKCC	GRCh37	13	49030451	49030484	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GAAATCTACCTCTCTTTCACTGTTTTATAAAAAA	GAAATCTACCTCTCTTTCACTGTTTTATAAAAAA	-			P-0060952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	133	361	1	ENST00000267163.4:c.1927_1960del	p.Lys643CysfsTer4	p.K643Cfs*4	ENST00000267163	NM_000321.2	642	ttGAAATCTACCTCTCTTTCACTGTTTTATAAAAAA/tt																																																																															
SDHA	6389	MSKCC	GRCh37	5	231076	231076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060952-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	241	595	3	ENST00000264932.6:c.856C>A	p.Pro286Thr	p.P286T	ENST00000264932	NM_004168.2	286	Cct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0061362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	331	486	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28623912	28623912	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0061362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	231	337	0	ENST00000241453.7:c.743-1G>T		p.X248_splice	ENST00000241453	NM_004119.2	248																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266015	41266600	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGA	AGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGA	-			P-0061362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	130	362	0	ENST00000349496.5:c.14-1_398del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0061363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	39	186	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0061368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	496	513	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T	rs730881673		P-0061368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	267	571	0	ENST00000304494.5:c.131dup	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TC			P-0061368-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	275	340	0	ENST00000256078.4:c.180_181inv	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggGAaa																																																																															
ATM	472	MSKCC	GRCh37	11	108216546	108216546	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	13	298	0	ENST00000278616.4:c.8495G>C	p.Arg2832Pro	p.R2832P	ENST00000278616	NM_000051.3	2832	cGt/cCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0061372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	43	234	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781314	3781314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	32	571	0	ENST00000262367.5:c.5051C>T	p.Ser1684Phe	p.S1684F	ENST00000262367	NM_004380.2	1684	tCc/tTc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25458657	25458657	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	30	399	0	ENST00000264709.3:c.2516C>A	p.Ser839Tyr	p.S839Y	ENST00000264709	NM_175629.2	839	tCc/tAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467926	66467926	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0061372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	29	347	0	ENST00000273854.3:c.343A>T	p.Thr115Ser	p.T115S	ENST00000273854	NM_004439.5	115	Acc/Tcc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032573	47032573	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	22	204	0	ENST00000329236.7:c.248G>T	p.Arg83Leu	p.R83L	ENST00000329236	NM_001204466.1	83	cGg/cTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0058459-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			467	27	291	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0059857-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			593	134	536	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059857-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			678	130	596	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137527318	137527318	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059857-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			533	62	379	0	ENST00000367739.4:c.328G>T	p.Glu110Ter	p.E110*	ENST00000367739	NM_000416.2	110	Gaa/Taa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813715	50813715	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059857-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			547	90	474	0	ENST00000398568.2:c.1269G>T	p.Met423Ile	p.M423I	ENST00000398568	NM_001042412.1	423	atG/atT																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4117581	4117581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059857-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			361	64	309	0	ENST00000262948.5:c.139G>T	p.Asp47Tyr	p.D47Y	ENST00000262948	NM_030662.3	47	Gac/Tac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098452	11098452	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059857-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			554	72	484	0	ENST00000344626.4:c.972del	p.Val325Ter	p.V325*	ENST00000344626	NM_003072.3	324	Ccc/cc																																																																															
HGF	3082	MSKCC	GRCh37	7	81392189	81392189	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0059857-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	58	232	0	ENST00000222390.5:c.89-1G>T		p.X30_splice	ENST00000222390	NM_000601.4	30																																																																																
EZH2	2146	MSKCC	GRCh37	7	148523568	148523568	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059857-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			636	68	386	0	ENST00000320356.2:c.885C>A	p.Phe295Leu	p.F295L	ENST00000320356	NM_004456.4	295	ttC/ttA																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5549589	5549589	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059857-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			520	96	458	0	ENST00000397747.3:c.616A>G	p.Ser206Gly	p.S206G	ENST00000397747	NM_025239.3	206	Agc/Ggc																																																																															
TEK	7010	MSKCC	GRCh37	9	27169551	27169551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059857-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			571	112	500	0	ENST00000380036.4:c.552G>T	p.Gln184His	p.Q184H	ENST00000380036	NM_000459.3	184	caG/caT																																																																															
FANCC	2176	MSKCC	GRCh37	9	98011503	98011503	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059857-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			594	80	455	0	ENST00000289081.3:c.71A>T	p.Gln24Leu	p.Q24L	ENST00000289081	NM_000136.2	24	cAg/cTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913389		P-0060070-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			432	85	430	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020447	69020447	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060070-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			525	84	424	0	ENST00000288368.4:c.2819T>C	p.Val940Ala	p.V940A	ENST00000288368	NM_024870.2	940	gTc/gCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0060473-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			326	156	262	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0060473-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			458	214	527	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175883	24175883	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0060473-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			532	118	505	1	ENST00000263121.7:c.1111A>T	p.Asn371Tyr	p.N371Y	ENST00000263121	NM_003073.3	371	Aac/Tac																																																																															
TP63	8626	MSKCC	GRCh37	3	189607157	189607157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060474-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			740	410	716	0	ENST00000264731.3:c.1536G>A	p.Met512Ile	p.M512I	ENST00000264731	NM_003722.4	512	atG/atA																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156711	20156716	+	inframe_deletion	In_Frame_Del	DEL	TACCCC	TACCCC	-			P-0060474-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			480	129	316	1	ENST00000379607.5:c.41_46del	p.Arg14_Gly15del	p.R14_G15del	ENST00000379607	NM_001412.3	14	aGGGGTAag/aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448178	49448178	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0060474-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			798	422	692	0	ENST00000301067.7:c.422G>A	p.Trp141Ter	p.W141*	ENST00000301067	NM_003482.3	141	tGg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750600586		P-0060656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	431	561	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916948	178916950	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0060656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	144	394	0	ENST00000263967.3:c.337_339del	p.Leu113del	p.L113del	ENST00000263967	NM_006218.2	112	aTCCtc/atc																																																																															
RET	5979	MSKCC	GRCh37	10	43610086	43610086	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs184498773		P-0060656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	241	706	0	ENST00000355710.3:c.2038G>A	p.Ala680Thr	p.A680T	ENST00000355710	NM_020975.4	680	Gcc/Acc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350753	15350753	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	234	538	0	ENST00000263377.2:c.3250C>G	p.Pro1084Ala	p.P1084A	ENST00000263377	NM_058243.2	1084	Cca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0061176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	40	339	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0061176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	70	250	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70356238	70356238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061176-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	33	454	0	ENST00000374080.3:c.5133C>A	p.Asp1711Glu	p.D1711E	ENST00000374080		1711	gaC/gaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0061181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	262	459	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0061181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	345	214	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023144	27023145	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCGGCGGCGGAGCCGGCA	rs1262500966		P-0061181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	77	443	0	ENST00000324856.7:c.261_278dup	p.Ala88_Gly93dup	p.A88_G93dup	ENST00000324856	NM_006015.4	88	ggc/gGCGGCGGCGGAGCCGGCAgc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199704	138199704	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0061181-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	231	352	0	ENST00000237289.4:c.1122A>C	p.Glu374Asp	p.E374D	ENST00000237289	NM_001270507.1	374	gaA/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0061184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	366	498	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0061184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	315	506	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095537	178095540	+	frameshift_variant	Frame_Shift_Del	DEL	CTTA	CTTA	-	rs748937667		P-0061184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	73	380	0	ENST00000397062.3:c.1791_1794del	p.Ser597ArgfsTer14	p.S597Rfs*14	ENST00000397062	NM_006164.4	597	agTAAG/ag																																																																															
LYN	4067	MSKCC	GRCh37	8	56879348	56879348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1219	173	491	0	ENST00000519728.1:c.865G>A	p.Glu289Lys	p.E289K	ENST00000519728	NM_002350.3	289	Gaa/Aaa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95556938	95556938	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0061184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	138	438	0	ENST00000343455.3:c.5666A>T	p.Lys1889Ile	p.K1889I	ENST00000343455	NM_177438.2	1889	aAa/aTa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508755	106508755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061184-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	625	614	0	ENST00000359195.3:c.749C>T	p.Thr250Ile	p.T250I	ENST00000359195	NM_002649.2	250	aCc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0061187-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	272	531	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0061187-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	213	492	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
MGA	23269	MSKCC	GRCh37	15	42052629	42052629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061187-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	207	544	0	ENST00000219905.7:c.7300C>T	p.Arg2434Trp	p.R2434W	ENST00000219905	NM_001164273.1	2434	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175890	112175890	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0061187-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	164	480	0	ENST00000257430.4:c.4599del	p.Asn1533LysfsTer32	p.N1533Kfs*32	ENST00000257430	NM_000038.5	1533	aaT/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720869	89720869	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0061187-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	142	181	0	ENST00000371953.3:c.1023del	p.Phe341LeufsTer3	p.F341Lfs*3	ENST00000371953	NM_000314.4	340	aaT/aa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47059145	47059145	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061187-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	213	469	0	ENST00000409792.3:c.7516A>G	p.Lys2506Glu	p.K2506E	ENST00000409792	NM_014159.6	2506	Aaa/Gaa																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200778	128200778	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061187-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	378	469	0	ENST00000341105.2:c.1027A>G	p.Arg343Gly	p.R343G	ENST00000341105	NM_032638.4	343	Aga/Gga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187531143	187531143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061187-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	180	448	0	ENST00000441802.2:c.9880G>T	p.Asp3294Tyr	p.D3294Y	ENST00000441802	NM_005245.3	3294	Gat/Tat																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589522	67589552	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTAATCTTTCTAGGATCAAGTTGTCAAAG	TTTTAATCTTTCTAGGATCAAGTTGTCAAAG	AAAAT			P-0061187-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	51	167	0	ENST00000274335.5:c.1300-15_1315delinsAAAAT		p.X434_splice	ENST00000274335		434																																																																																
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs1057517840		P-0061190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	570	729	0	ENST00000269305.4:c.626_627del	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
AR	367	MSKCC	GRCh37	X	66765159	66765185	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCA	-	rs1263149819		P-0061190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	48	191	0	ENST00000374690.3:c.213_239del	p.Gln72_Gln80del	p.Q72_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28971153	28971153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	276	467	0	ENST00000282397.4:c.1604G>A	p.Cys535Tyr	p.C535Y	ENST00000282397	NM_002019.4	535	tGc/tAc																																																																															
MET	4233	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0061190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	1236	495	0	ENST00000397752.3:c.3028+3A>G		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
POT1	25913	MSKCC	GRCh37	7	124511006	124511006	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0061190-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	494	295	0	ENST00000357628.3:c.214A>T	p.Ile72Phe	p.I72F	ENST00000357628	NM_015450.2	72	Att/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0061191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	235	761	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0061191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	264	622	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs377767347		P-0061191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	186	566	0	ENST00000342988.3:c.1082G>T	p.Arg361Leu	p.R361L	ENST00000342988	NM_005359.5	361	cGc/cTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852217		P-0061191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	280	366	0	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
CDC73	79577	MSKCC	GRCh37	1	193107230	193107230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	104	455	0	ENST00000367435.3:c.439C>T	p.Arg147Cys	p.R147C	ENST00000367435	NM_024529.4	147	Cgc/Tgc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047957	180047957	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1460398148		P-0061191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			810	216	795	0	ENST00000261937.6:c.2218G>A	p.Glu740Lys	p.E740K	ENST00000261937	NM_182925.4	740	Gag/Aag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3645686	3645686	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769084265		P-0061191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			876	53	628	0	ENST00000294008.3:c.1933G>A	p.Val645Met	p.V645M	ENST00000294008	NM_032444.2	645	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0061191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	104	277	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NUF2	83540	MSKCC	GRCh37	1	163313571	163313571	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0061191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	21	197	0	ENST00000271452.3:c.718T>G	p.Leu240Val	p.L240V	ENST00000271452	NM_145697.2	240	Ttg/Gtg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827351	72827351	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			803	47	568	0	ENST00000268489.5:c.9230C>G	p.Ala3077Gly	p.A3077G	ENST00000268489	NM_006885.3	3077	gCt/gGt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120021	70120755	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	GCCGCCGCCACCCCCGCAGCAGCCCCCACAGGCCCCGCCGGCCCCGCAGGCGCCCCCGCAGCCGCAGGCGGCGCCCCCACAGCAGCCGGCGGCACCCCCGCAGCAGCCACAGGCGCACACGCTGACCACGCTGAGCAGCGAGCCGGGCCAGTCCCAGCGAACGCACATCAAGACGGAGCAGCTGAGCCCCAGCCACTACAGCGAGCAGCAGCAGCACTCGCCCCAACAGATCGCCTACAGCCCCTTCAACCTCCCACACTACAGCCCCTCCTACCCGCCCATCACCCGCTCACAGTACGACTACACCGACCACCAGAACTCCAGCTCCTACTACAGCCACGCGGCAGGCCAGGGCACCGGCCTCTACTCCACCTTCACCTACATGAACCCCGCTCAGCGCCCCATGTACACCCCCATCGCCGACACCTCTGGGGTCCCTTCCATCCCGCAGACCCACAGCCCCCAGCACTGGGAACAACCCGTCTACACACAGCTCACTCGACCTTGAGGAGGCCTCCCACGAAGGGCGAAGATGGCCGAGATGATCCTAAAAATAACCGAAGAAAGAGAGGACCAACCAGAATTCCCTTTGGACATTTGTGTTTTTTTGTTTTTTTATTTTGTTTTGTTTTTTCTTCTTCTTCTTCTTCCTTAAAGACATTTAAGCTAAAGGCAACTCGTACCCAAATTTCCAAGACACAAACATGACCTATCCAAGCGCATTACCCACTTGTG	GCCGCCGCCACCCCCGCAGCAGCCCCCACAGGCCCCGCCGGCCCCGCAGGCGCCCCCGCAGCCGCAGGCGGCGCCCCCACAGCAGCCGGCGGCACCCCCGCAGCAGCCACAGGCGCACACGCTGACCACGCTGAGCAGCGAGCCGGGCCAGTCCCAGCGAACGCACATCAAGACGGAGCAGCTGAGCCCCAGCCACTACAGCGAGCAGCAGCAGCACTCGCCCCAACAGATCGCCTACAGCCCCTTCAACCTCCCACACTACAGCCCCTCCTACCCGCCCATCACCCGCTCACAGTACGACTACACCGACCACCAGAACTCCAGCTCCTACTACAGCCACGCGGCAGGCCAGGGCACCGGCCTCTACTCCACCTTCACCTACATGAACCCCGCTCAGCGCCCCATGTACACCCCCATCGCCGACACCTCTGGGGTCCCTTCCATCCCGCAGACCCACAGCCCCCAGCACTGGGAACAACCCGTCTACACACAGCTCACTCGACCTTGAGGAGGCCTCCCACGAAGGGCGAAGATGGCCGAGATGATCCTAAAAATAACCGAAGAAAGAGAGGACCAACCAGAATTCCCTTTGGACATTTGTGTTTTTTTGTTTTTTTATTTTGTTTTGTTTTTTCTTCTTCTTCTTCTTCCTTAAAGACATTTAAGCTAAAGGCAACTCGTACCCAAATTTCCAAGACACAAACATGACCTATCCAAGCGCATTACCCACTTGTG	-			P-0061191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			728	61	625	0	ENST00000245479.2:c.1026_*230del		p.*342*	ENST00000245479	NM_000346.3	341																																																																																
CEBPA	1050	MSKCC	GRCh37	19	33793083	33793083	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			722	45	555	0	ENST00000498907.2:c.238G>T	p.Asp80Tyr	p.D80Y	ENST00000498907	NM_004364.3	80	Gac/Tac																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021795	69021795	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	149	488	0	ENST00000288368.4:c.3083A>T	p.Lys1028Ile	p.K1028I	ENST00000288368	NM_024870.2	1028	aAa/aTa																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165698	118165698	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1432369724		P-0061330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			831	193	611	0	ENST00000369448.3:c.208C>T	p.Arg70Trp	p.R70W	ENST00000369448	NM_017709.3	70	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7590694	7590694	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0061330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			548	200	459	0	ENST00000269305.4:c.-29+1G>A		p.X10_splice	ENST00000269305	NM_001126112.2	10																																																																																
SF3B1	23451	MSKCC	GRCh37	2	198267651	198267853	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTAGAAATTAAATGTAAATACCTTTGCCAAATTAGAAATGATCTCTCGGCCTTCCACTCTAGCATAGTAATCTTCATCAATCAATAGCGGTTCAATGACCACGAGGATCTGAAAAAGAGAAAAGAGAAGAAGCTACACTTTCACATCAATTACTGATGAAATGCTCATGTACAGAATTAAACATACATAAGAAATTTAGAAT	TCTAGAAATTAAATGTAAATACCTTTGCCAAATTAGAAATGATCTCTCGGCCTTCCACTCTAGCATAGTAATCTTCATCAATCAATAGCGGTTCAATGACCACGAGGATCTGAAAAAGAGAAAAGAGAAGAAGCTACACTTTCACATCAATTACTGATGAAATGCTCATGTACAGAATTAAACATACATAAGAAATTTAGAAT	-			P-0061330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	54	376	0	ENST00000335508.6:c.1720-94_1806+22del		p.X574_splice	ENST00000335508	NM_012433.2	574																																																																																
RAD21	5885	MSKCC	GRCh37	8	117869601	117869601	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061330-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			783	191	399	0	ENST00000297338.2:c.593G>T	p.Ser198Ile	p.S198I	ENST00000297338	NM_006265.2	198	aGc/aTc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162774	47162774	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	57	414	0	ENST00000409792.3:c.3352G>T	p.Glu1118Ter	p.E1118*	ENST00000409792	NM_014159.6	1118	Gaa/Taa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713211	30713223	+	protein_altering_variant	In_Frame_Del	DEL	CCATATCTGTCAT	CCATATCTGTCAT	A			P-0061331-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			681	41	539	0	ENST00000359013.4:c.611_623delinsA	p.Ala204_Ile208delinsAsp	p.A204_I208delinsD	ENST00000359013	NM_001024847.2	204	gCCATATCTGTCATc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs770776262		P-0061335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	360	456	0	ENST00000269305.4:c.321C>A	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taA																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098816	178098816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	342	366	0	ENST00000397062.3:c.229G>C	p.Asp77His	p.D77H	ENST00000397062	NM_006164.4	77	Gat/Cat																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435625	110435625	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	263	402	0	ENST00000375856.3:c.2776G>T	p.Glu926Ter	p.E926*	ENST00000375856	NM_003749.2	926	Gag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845640	72845640	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148354034		P-0061335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	313	436	0	ENST00000268489.5:c.3700G>A	p.Asp1234Asn	p.D1234N	ENST00000268489	NM_006885.3	1234	Gat/Aat																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466522	120466522	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	289	413	0	ENST00000256646.2:c.4597G>T	p.Asp1533Tyr	p.D1533Y	ENST00000256646	NM_024408.3	1533	Gac/Tac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433896	49433896	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0061335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	403	572	0	ENST00000301067.7:c.7657C>T	p.Gln2553Ter	p.Q2553*	ENST00000301067	NM_003482.3	2553	Cag/Tag																																																																															
TET2	54790	MSKCC	GRCh37	4	106196433	106196433	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs368705448		P-0061335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	316	404	0	ENST00000380013.4:c.4766A>G	p.Tyr1589Cys	p.Y1589C	ENST00000380013	NM_001127208.2	1589	tAt/tGt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361126	66361126	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	134	322	0	ENST00000273854.3:c.1046del	p.Pro349HisfsTer73	p.P349Hfs*73	ENST00000273854	NM_004439.5	349	cCa/ca																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192445	138192445	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	305	349	0	ENST00000237289.4:c.81A>T	p.Glu27Asp	p.E27D	ENST00000237289	NM_001270507.1	27	gaA/gaT																																																																															
BCOR	54880	MSKCC	GRCh37	X	39911588	39911588	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	230	360	0	ENST00000378444.4:c.5042G>C	p.Arg1681Pro	p.R1681P	ENST00000378444	NM_001123385.1	1681	cGc/cCc																																																																															
ARAF	369	MSKCC	GRCh37	X	47429330	47429330	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	234	452	0	ENST00000377045.4:c.1458C>A	p.Tyr486Ter	p.Y486*	ENST00000377045	NM_001654.4	486	taC/taA																																																																															
STAG2	10735	MSKCC	GRCh37	X	123181324	123181324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			146	46	225	0	ENST00000218089.9:c.788G>A	p.Arg263Lys	p.R263K	ENST00000218089	NM_001042749.1	263	aGg/aAg																																																																															
KIT	3815	MSKCC	GRCh37	4	55602719	55602719	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752695117		P-0061352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	38	254	0	ENST00000288135.5:c.2540C>T	p.Thr847Met	p.T847M	ENST00000288135	NM_000222.2	847	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0061352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	44	468	0	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
WT1	7490	MSKCC	GRCh37	11	32413610	32413610	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0061352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	23	267	0	ENST00000332351.3:c.1340G>T	p.Gly447Val	p.G447V	ENST00000332351	NM_024426.4	447	gGt/gTt																																																																															
HGF	3082	MSKCC	GRCh37	7	81339492	81339492	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	38	247	0	ENST00000222390.5:c.1512C>A	p.Asn504Lys	p.N504K	ENST00000222390	NM_000601.4	504	aaC/aaA																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123325056	123325056	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	63	395	0	ENST00000358487.5:c.272A>G	p.Tyr91Cys	p.Y91C	ENST00000358487	NM_000141.4	91	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0061352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	96	195	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CCND2	894	MSKCC	GRCh37	12	4398082	4398082	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	110	308	0	ENST00000261254.3:c.646C>G	p.Gln216Glu	p.Q216E	ENST00000261254	NM_001759.3	216	Cag/Gag																																																																															
POLE	5426	MSKCC	GRCh37	12	133202806	133202806	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0061352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	51	439	0	ENST00000320574.5:c.6428A>T	p.Gln2143Leu	p.Q2143L	ENST00000320574	NM_006231.2	2143	cAg/cTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678344	88678344	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	32	332	0	ENST00000360948.2:c.1192G>T	p.Glu398Ter	p.E398*	ENST00000360948	NM_001012338.2	398	Gag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37872023	37872024	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0061352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	45	469	1	ENST00000269571.5:c.1344_1345delinsTT	p.Gly449Cys	p.G449C	ENST00000269571		448	ctGGgc/ctTTgc																																																																															
CD79B	974	MSKCC	GRCh37	17	62007580	62007580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	40	400	0	ENST00000392795.3:c.287G>T	p.Arg96Leu	p.R96L	ENST00000392795	NM_001039933.1	96	cGc/cTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467383	66467383	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	49	343	0	ENST00000273854.3:c.886G>C	p.Glu296Gln	p.E296Q	ENST00000273854	NM_004439.5	296	Gaa/Caa																																																																															
APC	324	MSKCC	GRCh37	5	112111342	112111342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	18	172	0	ENST00000257430.4:c.439G>A	p.Asp147Asn	p.D147N	ENST00000257430	NM_000038.5	147	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112111369	112111369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	20	175	0	ENST00000257430.4:c.466G>C	p.Asp156His	p.D156H	ENST00000257430	NM_000038.5	156	Gac/Cac																																																																															
APC	324	MSKCC	GRCh37	5	112111392	112111392	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	24	188	0	ENST00000257430.4:c.489G>C	p.Gln163His	p.Q163H	ENST00000257430	NM_000038.5	163	caG/caC																																																																															
APC	324	MSKCC	GRCh37	5	112111411	112111411	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061352-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	24	191	0	ENST00000257430.4:c.508G>C	p.Asp170His	p.D170H	ENST00000257430	NM_000038.5	170	Gat/Cat																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21350158	21350158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030387-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			418	129	528	0	ENST00000215739.8:c.2066C>T	p.Ser689Phe	p.S689F	ENST00000215739	NM_006767.3	689	tCc/tTc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727505	88727505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059537-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			583	61	545	0	ENST00000360948.2:c.274C>T	p.His92Tyr	p.H92Y	ENST00000360948	NM_001012338.2	92	Cac/Tac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911247	32911247	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs431825298		P-0059537-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			392	83	481	0	ENST00000380152.3:c.2755G>A	p.Glu919Lys	p.E919K	ENST00000380152		919	Gaa/Aaa																																																																															
CTR9	9646	MSKCC	GRCh37	11	10785066	10785066	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059537-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			426	61	401	0	ENST00000361367.2:c.938C>G	p.Ala313Gly	p.A313G	ENST00000361367	NM_014633.3	313	gCt/gGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120890	115120897	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCTG	GGCGGCTG	-			P-0059537-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			420	61	571	1	ENST00000257566.3:c.109_116del	p.Gln37ValfsTer71	p.Q37Vfs*71	ENST00000257566	NM_016569.3	37	CAGCCGCCg/g																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348701	11348701	+	stop_lost	Nonstop_Mutation	SNP	C	C	A			P-0059537-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			443	50	472	0	ENST00000332029.2:c.635G>T	p.Ter212LeuextTer60	p.*212Lext*60	ENST00000332029	NM_003745.1	212	tGa/tTa																																																																															
CDH1	999	MSKCC	GRCh37	16	68857377	68857378	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0059537-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			445	70	467	0	ENST00000261769.5:c.2013_2014del	p.Asp671GlufsTer4	p.D671Efs*4	ENST00000261769	NM_004360.3	671	gAT/g																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519968		P-0059853-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			547	126	406	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578412	7578412	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519747		P-0059853-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			494	167	620	0	ENST00000269305.4:c.518T>C	p.Val173Ala	p.V173A	ENST00000269305	NM_001126112.2	173	gTg/gCg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211151	2211151	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777324633		P-0059853-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			550	151	593	0	ENST00000398665.3:c.1405C>T	p.Arg469Trp	p.R469W	ENST00000398665	NM_032482.2	469	Cgg/Tgg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0060326-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			535	267	545	0	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259364	36259364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060326-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			618	219	506	0	ENST00000300305.3:c.127C>T	p.Pro43Ser	p.P43S	ENST00000300305		43	Cct/Tct																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70971059	70971059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060326-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			619	402	364	0	ENST00000276594.2:c.1202G>T	p.Arg401Ile	p.R401I	ENST00000276594	NM_024504.3	401	aGa/aTa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243362	46243362	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0060326-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			463	138	350	0	ENST00000334344.6:c.1716-1G>T		p.X572_splice	ENST00000334344	NM_152641.2	572																																																																																
MSH2	4436	MSKCC	GRCh37	2	47657053	47657053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060326-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			476	131	294	0	ENST00000233146.2:c.1249G>A	p.Val417Ile	p.V417I	ENST00000233146	NM_000251.2	417	Gtt/Att																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729865	41729865	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060326-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			708	114	497	0	ENST00000242208.4:c.664C>A	p.Pro222Thr	p.P222T	ENST00000242208	NM_002192.2	222	Cct/Act																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610419	10610419	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060326-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			601	320	551	0	ENST00000171111.5:c.291G>T	p.Lys97Asn	p.K97N	ENST00000171111	NM_203500.1	97	aaG/aaT																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38273398	38273398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060326-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			548	231	534	0	ENST00000425967.3:c.1937C>A	p.Ala646Asp	p.A646D	ENST00000425967	NM_001174067.1	646	gCc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578515	7578517	+	stop_gained	Nonsense_Mutation	ONP	TGG	TGG	AGA			P-0060326-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			638	304	557	0	ENST00000269305.4:c.413_415delinsTCT	p.Ala138_Lys139delinsValTer	p.A138_K139delinsV*	ENST00000269305	NM_001126112.2	138	gCCAag/gTCTag																																																																															
PARP1	142	MSKCC	GRCh37	1	226578315	226578315	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060326-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			709	151	483	0	ENST00000366794.5:c.413G>C	p.Arg138Pro	p.R138P	ENST00000366794	NM_001618.3	138	cGc/cCc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18439799	18439799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060326-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			214	64	266	0	ENST00000266497.5:c.697C>A	p.Gln233Lys	p.Q233K	ENST00000266497		233	Cag/Aag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246378	46246378	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0060326-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			787	255	508	0	ENST00000334344.6:c.4472C>G	p.Ser1491Ter	p.S1491*	ENST00000334344	NM_152641.2	1491	tCa/tGa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679131	88679131	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0060326-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			824	90	424	0	ENST00000360948.2:c.906C>A	p.Tyr302Ter	p.Y302*	ENST00000360948	NM_001012338.2	302	taC/taA																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2094710	2094710	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150437839		P-0060326-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			595	223	476	1	ENST00000219066.1:c.470G>A	p.Arg157Gln	p.R157Q	ENST00000219066	NM_002528.5	157	cGg/cAg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78936764	78936764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060326-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			774	268	567	0	ENST00000306801.3:c.3846C>A	p.Ser1282Arg	p.S1282R	ENST00000306801	NM_020761.2	1282	agC/agA																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607650	46607650	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060326-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			771	262	576	0	ENST00000263734.3:c.1839C>G	p.Ser613Arg	p.S613R	ENST00000263734	NM_001430.4	613	agC/agG																																																																															
ALB	213	MSKCC	GRCh37	4	74283891	74283891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060326-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			611	107	422	0	ENST00000295897.4:c.1515G>T	p.Leu505Phe	p.L505F	ENST00000295897	NM_000477.5	505	ttG/ttT																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31511199	31511199	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060326-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			555	107	346	0	ENST00000344624.3:c.1375G>C	p.Ala459Pro	p.A459P	ENST00000344624		459	Gcc/Ccc																																																																															
STK19	8859	MSKCC	GRCh37	6	31947309	31947309	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060326-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			996	116	473	0	ENST00000375331.2:c.782G>T	p.Gly261Val	p.G261V	ENST00000375331	NM_004197.1	261	gGc/gTc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289017	33289017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060326-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			746	448	580	0	ENST00000374542.5:c.535C>T	p.Pro179Ser	p.P179S	ENST00000374542	NM_001141970.1	179	Cca/Tca																																																																															
PREX2	80243	MSKCC	GRCh37	8	69009334	69009335	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AT			P-0060326-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			571	241	358	0	ENST00000288368.4:c.2451_2452delinsAT	p.Glu818Ter	p.E818*	ENST00000288368	NM_024870.2	817	ctGGaa/ctATaa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8524949	8524949	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060326-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			340	146	320	0	ENST00000356435.5:c.655G>T	p.Ala219Ser	p.A219S	ENST00000356435		219	Gct/Tct																																																																															
ARAF	369	MSKCC	GRCh37	X	47428430	47428430	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0060326-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			718	202	472	0	ENST00000377045.4:c.1298A>G	p.Asn433Ser	p.N433S	ENST00000377045	NM_001654.4	433	aAc/aGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0061197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	49	272	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577034	7577035	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0061197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	54	556	0	ENST00000269305.4:c.903dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	-/A																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660079	227660079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	50	589	0	ENST00000305123.5:c.3376G>A	p.Gly1126Arg	p.G1126R	ENST00000305123	NM_005544.2	1126	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0061201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	23	571	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440963	56440963	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0061201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	51	525	0	ENST00000407977.2:c.376-2A>G		p.X126_splice	ENST00000407977		126																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0061201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	53	308	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591818	48591818	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0061201-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	33	501	0	ENST00000342988.3:c.982del	p.Tyr328ThrfsTer8	p.Y328Tfs*8	ENST00000342988	NM_005359.5	327	gcT/gc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784041	9784041	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752328071		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	142	458	0	ENST00000377346.4:c.2609G>A	p.Arg870Gln	p.R870Q	ENST00000377346	NM_005026.3	870	cGa/cAa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257525	16257525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	62	518	0	ENST00000375759.3:c.4794del	p.Glu1599LysfsTer33	p.E1599Kfs*33	ENST00000375759	NM_015001.2	1597	gAa/ga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	57	550	2	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106506	27106507	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			732	47	589	0	ENST00000324856.7:c.6121dup	p.Val2041GlyfsTer58	p.V2041Gfs*58	ENST00000324856	NM_006015.4	2039	-/G																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	71	503	0	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1181132297		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	98	469	1	ENST00000342505.4:c.1016del	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339128	65339129	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	200	495	0	ENST00000342505.4:c.407dup	p.Asn136LysfsTer16	p.N136Kfs*16	ENST00000342505	NM_002227.2	136	aat/aaAt																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72058517	72058517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372023233		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	175	405	2	ENST00000357731.5:c.923C>T	p.Ala308Val	p.A308V	ENST00000357731	NM_173808.2	308	gCg/gTg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838380	156838380	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202030811		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	184	563	0	ENST00000524377.1:c.658C>T	p.Arg220Trp	p.R220W	ENST00000524377	NM_002529.3	220	Cgg/Tgg																																																																															
RET	5979	MSKCC	GRCh37	10	43604668	43604668	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371731991		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	141	474	0	ENST00000355710.3:c.1253G>A	p.Arg418Gln	p.R418Q	ENST00000355710	NM_020975.4	418	cGa/cAa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63759868	63759868	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766186442		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	134	435	0	ENST00000279873.7:c.521C>T	p.Thr174Met	p.T174M	ENST00000279873	NM_032199.2	174	aCg/aTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70405959	70405959	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200333871		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	207	464	0	ENST00000373644.4:c.3473G>A	p.Arg1158Gln	p.R1158Q	ENST00000373644	NM_030625.2	1158	cGg/cAg																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724426	112724426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	172	467	1	ENST00000369452.4:c.310C>T	p.Arg104Cys	p.R104C	ENST00000369452	NM_007373.3	104	Cgt/Tgt																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154241	2154242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755455183		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	121	549	1	ENST00000434045.2:c.686dup	p.Glu230ArgfsTer50	p.E230Rfs*50	ENST00000434045	NM_001127598.1	229	cca/ccCa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942228	71942228	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746333764		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	57	416	0	ENST00000298229.2:c.1492C>T	p.Arg498Cys	p.R498C	ENST00000298229	NM_001567.3	498	Cgc/Tgc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307394	118307394	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	26	237	3	ENST00000534358.1:c.173del	p.Pro58ArgfsTer92	p.P58Rfs*92	ENST00000534358	NM_005933.3	56	tCc/tc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427665	49427667	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-	rs747016071		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	174	557	8	ENST00000301067.7:c.10821_10823del	p.Gln3612del	p.Q3612del	ENST00000301067	NM_003482.3	3607	caGCAa/caa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435258	49435258	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	77	464	0	ENST00000301067.7:c.6295C>T	p.Arg2099Ter	p.R2099*	ENST00000301067	NM_003482.3	2099	Cga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109903	115109903	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1182290035		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	93	509	0	ENST00000257566.3:c.1975G>A	p.Ala659Thr	p.A659T	ENST00000257566	NM_016569.3	659	Gcc/Acc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	149	532	4	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28626775	28626775	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	59	335	0	ENST00000241453.7:c.521G>C	p.Arg174Thr	p.R174T	ENST00000241453	NM_004119.2	174	aGa/aCa																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008324	29008324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770377283		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	79	421	0	ENST00000282397.4:c.547C>T	p.Arg183Cys	p.R183C	ENST00000282397	NM_002019.4	183	Cgc/Tgc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	136	403	6	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240075	41240075	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs914847913		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	53	224	0	ENST00000379561.5:c.275C>T	p.Ala92Val	p.A92V	ENST00000379561	NM_002015.3	92	gCg/gTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524611	103524612	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs752661599		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	161	383	6	ENST00000355739.4:c.2751dup	p.Leu918IlefsTer12	p.L918Ifs*12	ENST00000355739	NM_000123.3	914	-/A																																																																															
TSHR	7253	MSKCC	GRCh37	14	81563000	81563000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	139	370	0	ENST00000298171.2:c.563G>A	p.Gly188Asp	p.G188D	ENST00000298171	NM_000369.2	188	gGc/gAc																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51504528	51504528	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs775998808		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	56	336	0	ENST00000396402.1:c.1252T>G	p.Phe418Val	p.F418V	ENST00000396402	NM_000103.3	418	Ttt/Gtt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223295	2223295	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376570339		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	164	546	1	ENST00000326181.6:c.907G>A	p.Val303Met	p.V303M	ENST00000326181	NM_032271.2	303	Gtg/Atg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858232	9858232	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1187237144		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	176	511	0	ENST00000330684.3:c.3169G>A	p.Ala1057Thr	p.A1057T	ENST00000330684	NM_001134407.1	1057	Gcc/Acc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56839518	56839518	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1389829048		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	66	395	0	ENST00000308159.5:c.463G>A	p.Ala155Thr	p.A155T	ENST00000308159	NM_014669.4	155	Gcc/Acc																																																																															
CDH1	999	MSKCC	GRCh37	16	68842650	68842650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	47	520	0	ENST00000261769.5:c.586G>A	p.Gly196Arg	p.G196R	ENST00000261769	NM_004360.3	196	Gga/Aga																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81888105	81888105	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	186	421	1	ENST00000359376.3:c.250C>T	p.Arg84Ter	p.R84*	ENST00000359376	NM_002661.3	84	Cga/Tga																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544772	86544772	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	113	414	0	ENST00000262426.4:c.597G>T	p.Leu199Phe	p.L199F	ENST00000262426	NM_001451.2	199	ttG/ttT																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347776	89347776	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764002055		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	144	517	0	ENST00000301030.4:c.5174C>T	p.Pro1725Leu	p.P1725L	ENST00000301030	NM_001256183.1	1725	cCg/cTg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8109941	8109941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	145	457	0	ENST00000585124.1:c.554C>T	p.Ala185Val	p.A185V	ENST00000585124	NM_004217.3	185	gCa/gTa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	117	450	3	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627730	37627730	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	168	459	0	ENST00000447079.4:c.1649del	p.Pro550LeufsTer60	p.P550Lfs*60	ENST00000447079	NM_015083.1	549	Ccc/cc																																																																															
RARA	5914	MSKCC	GRCh37	17	38511592	38511592	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758706699		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	136	461	0	ENST00000254066.5:c.1090C>T	p.Arg364Trp	p.R364W	ENST00000254066	NM_000964.3	364	Cgg/Tgg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47679303	47679303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	51	382	0	ENST00000347630.2:c.904G>A	p.Ala302Thr	p.A302T	ENST00000347630	NM_001007230.1	302	Gct/Act																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	314	588	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532501	63532501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755519590		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	56	519	0	ENST00000307078.5:c.2078C>T	p.Thr693Met	p.T693M	ENST00000307078	NM_004655.3	693	aCg/aTg																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733194	74733194	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	47	474	0	ENST00000359995.5:c.49A>G	p.Lys17Glu	p.K17E	ENST00000359995	NM_001195427.1	17	Aag/Gag																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78897352	78897352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	163	634	0	ENST00000306801.3:c.2687C>T	p.Pro896Leu	p.P896L	ENST00000306801	NM_020761.2	896	cCg/cTg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78936356	78936356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	46	492	0	ENST00000306801.3:c.3788C>T	p.Pro1263Leu	p.P1263L	ENST00000306801	NM_020761.2	1263	cCc/cTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599916	10599916	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs946921406		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	190	440	0	ENST00000171111.5:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000171111	NM_203500.1	554	Cga/Tga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143994	11143994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	100	460	0	ENST00000358026.2:c.3575G>A	p.Arg1192His	p.R1192H	ENST00000358026	NM_001128849.1	1192	cGc/cAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11150180	11150180	+	intron_variant	Intron	SNP	G	G	A	rs779801126		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	140	341	1	ENST00000344626.4:c.4171-1803G>A		p.*1391*	ENST00000344626	NM_003072.3																																																																																	
SMARCA4	6597	MSKCC	GRCh37	19	11170724	11170724	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1356932636		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	138	481	0	ENST00000344626.4:c.4772G>A	p.Arg1591Gln	p.R1591Q	ENST00000344626	NM_003072.3	1591	cGg/cAg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272094	15272095	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	135	572	0	ENST00000263388.2:c.6344dup	p.Ala2116CysfsTer9	p.A2116Cfs*9	ENST00000263388	NM_000435.2	2115	cct/ccCt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366911	15366911	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	147	448	0	ENST00000263377.2:c.1715del	p.Lys572ArgfsTer12	p.K572Rfs*12	ENST00000263377	NM_058243.2	572	aAg/ag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214094	36214094	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1253599925		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	175	527	0	ENST00000222270.7:c.2920C>T	p.Arg974Cys	p.R974C	ENST00000222270	NM_014727.1	974	Cgt/Tgt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224339	36224340	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	70	629	0	ENST00000222270.7:c.6895dup	p.Arg2299ProfsTer4	p.R2299Pfs*4	ENST00000222270	NM_014727.1	2297	gcc/gCcc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905034	50905034	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	19	339	0	ENST00000440232.2:c.317-1G>A		p.X106_splice	ENST00000440232	NM_002691.3	106																																																																																
POLD1	5424	MSKCC	GRCh37	19	50917041	50917041	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759190487		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	159	579	0	ENST00000440232.2:c.2293G>A	p.Val765Met	p.V765M	ENST00000440232	NM_002691.3	765	Gtg/Atg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082313	16082314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs780080562		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	118	484	0	ENST00000281043.3:c.134dup	p.Glu47GlyfsTer8	p.E47Gfs*8	ENST00000281043	NM_005378.4	43	acc/aCcc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085680	16085680	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776847158		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	109	437	0	ENST00000281043.3:c.856C>T	p.Arg286Cys	p.R286C	ENST00000281043	NM_005378.4	286	Cgt/Tgt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966873	25966873	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1271466699		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	170	578	6	ENST00000435504.4:c.2333del	p.Pro778GlnfsTer21	p.P778Qfs*21	ENST00000435504		778	cCa/ca																																																																															
MSH2	4436	MSKCC	GRCh37	2	47710016	47710016	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	109	302	0	ENST00000233146.2:c.2736del	p.Ala913LeufsTer3	p.A913Lfs*3	ENST00000233146	NM_000251.2	911	ctA/ct																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	165	532	3	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873022	136873022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	31	534	0	ENST00000241393.3:c.476G>A	p.Gly159Asp	p.G159D	ENST00000241393	NM_003467.2	159	gGc/gAc																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	122	382	0	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	123	526	15	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663299	227663301	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs753296153		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	85	427	0	ENST00000305123.5:c.154_156del	p.Lys52del	p.K52del	ENST00000305123	NM_005544.2	52	AAG/-																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024960	31024960	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779918659		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			891	65	471	1	ENST00000375687.4:c.4445C>T	p.Ala1482Val	p.A1482V	ENST00000375687	NM_015338.5	1482	gCg/gTg																																																																															
SRC	6714	MSKCC	GRCh37	20	36031696	36031696	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1305388441		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	131	596	0	ENST00000358208.4:c.1525C>T	p.Arg509Trp	p.R509W	ENST00000358208		509	Cgg/Tgg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39744069	39744070	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	156	361	0	ENST00000361337.2:c.1698_1699del	p.Asp566GlufsTer9	p.D566Efs*9	ENST00000361337	NM_003286.2	566	gAT/g																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714426	40714426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	56	429	0	ENST00000373198.4:c.3971C>T	p.Ser1324Phe	p.S1324F	ENST00000373198	NM_133170.3	1324	tCc/tTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385198	41385198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	229	427	1	ENST00000373198.4:c.763G>A	p.Ala255Thr	p.A255T	ENST00000373198	NM_133170.3	255	Gca/Aca																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279837	46279842	+	inframe_deletion	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	rs779510744		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	171	419	4	ENST00000371998.3:c.3786_3791del	p.Gln1275_Gln1276del	p.Q1275_Q1276del	ENST00000371998		1255	CAGCAG/-																																																																															
ERG	2078	MSKCC	GRCh37	21	39755663	39755663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	51	495	0	ENST00000288319.7:c.1102G>A	p.Ala368Thr	p.A368T	ENST00000288319	NM_182918.3	368	Gcc/Acc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513282	44513287	+	inframe_deletion	In_Frame_Del	DEL	CCACCG	CCACCG	-	rs769920981		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			705	15	477	1	ENST00000291552.4:c.648_653del	p.Gly222_Gly223del	p.G222_G223del	ENST00000291552	NM_006758.2	216	ggCGGTGGt/ggt																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121082	29121082	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs781254437		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	73	364	0	ENST00000328354.6:c.475T>C	p.Tyr159His	p.Y159H	ENST00000328354	NM_007194.3	159	Tac/Cac																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	172	453	1	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49932713	49932713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1156805771		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	173	540	0	ENST00000296474.3:c.3158G>A	p.Arg1053Gln	p.R1053Q	ENST00000296474	NM_002447.2	1053	cGg/cAg																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63967897	63967897	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777248770		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	73	421	0	ENST00000398590.3:c.788C>T	p.Pro263Leu	p.P263L	ENST00000398590	NM_001177387.1	263	cCg/cTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884875	134884875	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368240835		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	119	344	0	ENST00000398015.3:c.1651G>A	p.Val551Met	p.V551M	ENST00000398015	NM_004441.4	551	Gtg/Atg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138382792	138382792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	150	368	0	ENST00000289153.2:c.2752G>A	p.Gly918Ser	p.G918S	ENST00000289153	NM_006219.2	918	Ggt/Agt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	41	244	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540064	187540064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	35	444	0	ENST00000441802.2:c.7676C>A	p.Pro2559Gln	p.P2559Q	ENST00000441802	NM_005245.3	2559	cCg/cAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629337	187629337	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376582889		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	184	471	2	ENST00000441802.2:c.1645C>T	p.Arg549Trp	p.R549W	ENST00000441802	NM_005245.3	549	Cgg/Tgg																																																																															
SDHA	6389	MSKCC	GRCh37	5	251506	251506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	39	168	0	ENST00000264932.6:c.1717C>A	p.Leu573Met	p.L573M	ENST00000264932	NM_004168.2	573	Ctg/Atg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	183	453	5	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	223	348	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518067	176518067	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	143	523	0	ENST00000292408.4:c.565C>T	p.Gln189Ter	p.Q189*	ENST00000292408	NM_213647.1	189	Cag/Tag																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31236946	31236946	+	stop_lost	Nonstop_Mutation	SNP	T	T	G			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	40	304	0	ENST00000376228.5:c.1101A>C	p.Ter367CysextTer41	p.*367Cext*41	ENST00000376228	NM_002117.5	367	tgA/tgC																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	93	336	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
STK19	8859	MSKCC	GRCh37	6	31940500	31940500	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	129	457	0	ENST00000375331.2:c.533T>G	p.Leu178Arg	p.L178R	ENST00000375331	NM_004197.1	178	cTt/cGt																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36651973	36651973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	154	492	1	ENST00000244741.5:c.95G>A	p.Arg32His	p.R32H	ENST00000244741	NM_000389.4	32	cGc/cAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509191	106509191	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	184	520	0	ENST00000359195.3:c.1185C>A	p.Cys395Ter	p.C395*	ENST00000359195	NM_002649.2	395	tgC/tgA																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	135	359	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38139019	38139019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	238	345	0	ENST00000317025.8:c.3584G>A	p.Ser1195Asn	p.S1195N	ENST00000317025	NM_023034.1	1195	aGt/aAt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981892	70981892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	56	568	0	ENST00000276594.2:c.204del	p.Phe69SerfsTer10	p.F69Sfs*10	ENST00000276594	NM_024504.3	68	ccC/cc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5065031	5065031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868456341		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	24	310	0	ENST00000381652.3:c.1205G>A	p.Gly402Asp	p.G402D	ENST00000381652	NM_004972.3	402	gGc/gAc																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006101	22006101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1425823622		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	165	544	0	ENST00000276925.6:c.302G>A	p.Arg101Gln	p.R101Q	ENST00000276925	NM_004936.3	101	cGg/cAg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	121	486	2	ENST00000331920.6:c.3921del	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396836	139396836	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777859108		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	150	420	0	ENST00000277541.6:c.5272C>T	p.Arg1758Cys	p.R1758C	ENST00000277541	NM_017617.3	1758	Cgc/Tgc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53224208	53224208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	166	474	1	ENST00000375401.3:c.3343C>T	p.Arg1115Cys	p.R1115C	ENST00000375401	NM_004187.3	1115	Cgc/Tgc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	80	428	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412694	63412694	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	83	440	0	ENST00000330258.3:c.473A>C	p.Lys158Thr	p.K158T	ENST00000330258	NM_152424.3	158	aAg/aCg																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	9	353	1	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438317	110438322	+	inframe_deletion	In_Frame_Del	DEL	GTTGTT	GTTGTT	-	rs1269430357		P-0061204-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	63	357	0	ENST00000375856.3:c.79_84del	p.Asn27_Asn28del	p.N27_N28del	ENST00000375856	NM_003749.2	27	AACAAC/-																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0061224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	88	461	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448518	49448518	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1189364625		P-0061224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			786	44	734	0	ENST00000301067.7:c.193C>T	p.Arg65Cys	p.R65C	ENST00000301067	NM_003482.3	65	Cgt/Tgt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44515842	44515842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	73	452	0	ENST00000291552.4:c.211G>A	p.Asp71Asn	p.D71N	ENST00000291552	NM_006758.2	71	Gat/Aat																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285677	46285678	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0061224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	192	509	0	ENST00000334344.6:c.5040_5041dup	p.Ser1681PhefsTer21	p.S1681Ffs*21	ENST00000334344	NM_152641.2	1679	-/TT																																																																															
NF1	4763	MSKCC	GRCh37	17	29486027	29486027	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0061224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			41	54	254	0	ENST00000358273.4:c.205-1G>A		p.X69_splice	ENST00000358273	NM_001042492.2	69																																																																																
STAG2	10735	MSKCC	GRCh37	X	123182905	123182907	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0061224-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			34	118	128	0	ENST00000218089.9:c.872_874del	p.Gly291del	p.G291del	ENST00000218089	NM_001042749.1	290	aaAGGa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0061242-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	83	429	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0061242-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	97	278	4	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206652419	206652419	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061242-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	73	513	0	ENST00000367120.3:c.1126A>G	p.Ser376Gly	p.S376G	ENST00000367120	NM_014002.3	376	Agc/Ggc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485810	8485810	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs724159859		P-0061242-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	84	369	2	ENST00000356435.5:c.3007G>A	p.Gly1003Arg	p.G1003R	ENST00000356435		1003	Ggg/Agg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0061246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	191	296	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372022	55372022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	216	450	0	ENST00000297316.4:c.712G>A	p.Ala238Thr	p.A238T	ENST00000297316	NM_022454.3	238	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576883	7576883	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0061246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	509	596	0	ENST00000269305.4:c.963del	p.Lys321AsnfsTer24	p.K321Nfs*24	ENST00000269305	NM_001126112.2	321	aaA/aa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	159	333	2	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702391	47702391	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs752241362		P-0061246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	119	272	0	ENST00000233146.2:c.1987A>T	p.Met663Leu	p.M663L	ENST00000233146	NM_000251.2	663	Atg/Ttg																																																																															
AR	367	MSKCC	GRCh37	X	66863125	66863125	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs139524801		P-0061246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	202	383	0	ENST00000374690.3:c.1644G>T	p.Leu548Phe	p.L548F	ENST00000374690	NM_000044.3	548	ttG/ttT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69129903	69129903	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752113779		P-0061246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	223	406	0	ENST00000288368.4:c.4657G>A	p.Gly1553Arg	p.G1553R	ENST00000288368	NM_024870.2	1553	Gga/Aga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440742	56440742	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	252	480	0	ENST00000407977.2:c.476G>A	p.Trp159Ter	p.W159*	ENST00000407977		159	tGg/tAg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0061248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	77	187	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0061248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	83	295	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TSC2	7249	MSKCC	GRCh37	16	2133785	2133785	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	106	428	0	ENST00000219476.3:c.3973G>C	p.Gly1325Arg	p.G1325R	ENST00000219476	NM_000548.3	1325	Ggc/Cgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714421	40714421	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1447304698		P-0061248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	117	375	0	ENST00000373198.4:c.3976G>C	p.Asp1326His	p.D1326H	ENST00000373198	NM_133170.3	1326	Gac/Cac																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858139	152858139	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061248-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	198	202	0	ENST00000406277.2:c.476G>A	p.Trp159Ter	p.W159*	ENST00000406277	NM_152274.4	159	tGg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579312	7579312	+	splice_region_variant,synonymous_variant	Splice_Region	SNP	C	C	T	rs55863639		P-0060872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			59	243	1056	1	ENST00000269305.4:c.375G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125	acG/acA																																																																															
RB1	5925	MSKCC	GRCh37	13	48941648	48941648	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913300		P-0060872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			17	42	109	0	ENST00000267163.4:c.958C>T	p.Arg320Ter	p.R320*	ENST00000267163	NM_000321.2	320	Cga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048166	180048166	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1369049878		P-0060872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	421	1794	1	ENST00000261937.6:c.2107G>A	p.Gly703Arg	p.G703R	ENST00000261937	NM_182925.4	703	Gga/Aga																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749443	41749443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060872-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	190	900	1	ENST00000226382.2:c.352G>A	p.Ala118Thr	p.A118T	ENST00000226382	NM_003924.3	118	Gcg/Acg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106364	27106364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061159-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	224	686	0	ENST00000324856.7:c.5975C>T	p.Ser1992Leu	p.S1992L	ENST00000324856	NM_006015.4	1992	tCa/tTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0060182-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			224	427	299	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0060182-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			160	117	460	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																															
FYN	2534	MSKCC	GRCh37	6	112020874	112020874	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0060182-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			257	15	297	0	ENST00000368678.4:c.698-1G>C		p.X233_splice	ENST00000368678		233																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0060475-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			652	15	319	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856655	111856655	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1014425313		P-0060520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	215	494	0	ENST00000341259.2:c.706G>A	p.Val236Met	p.V236M	ENST00000341259	NM_005475.2	236	Gtg/Atg																																																																															
ATM	472	MSKCC	GRCh37	11	108186639	108186639	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0060520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	157	401	0	ENST00000278616.4:c.6095+1G>T		p.X2032_splice	ENST00000278616	NM_000051.3	2032																																																																																
KIT	3815	MSKCC	GRCh37	4	55561890	55561890	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs146081659		P-0060520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	216	458	0	ENST00000288135.5:c.280A>G	p.Lys94Glu	p.K94E	ENST00000288135	NM_000222.2	94	Aaa/Gaa																																																																															
APC	324	MSKCC	GRCh37	5	112175834	112175835	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0060520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	61	537	0	ENST00000257430.4:c.4544_4545del	p.Phe1515TyrfsTer17	p.F1515Yfs*17	ENST00000257430	NM_000038.5	1515	TTt/t																																																																															
APC	324	MSKCC	GRCh37	5	112176688	112176688	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0060520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	42	493	0	ENST00000257430.4:c.5399del	p.Asn1800MetfsTer17	p.N1800Mfs*17	ENST00000257430	NM_000038.5	1799	ttA/tt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135801124	135801124	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0060520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	160	364	0	ENST00000298552.3:c.213C>A	p.His71Gln	p.H71Q	ENST00000298552	NM_001162426.1	71	caC/caA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060705-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			155	437	703	1	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
RB1	5925	MSKCC	GRCh37	13	48954221	48954221	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0060705-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			57	264	231	0	ENST00000267163.4:c.1421+1G>T		p.X474_splice	ENST00000267163	NM_000321.2	474																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37881114	37881114	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368094521		P-0060705-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1240	391	694	1	ENST00000269571.5:c.2443G>A	p.Gly815Arg	p.G815R	ENST00000269571		815	Gga/Aga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134898819	134898819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060705-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			407	287	500	0	ENST00000398015.3:c.1877G>A	p.Gly626Glu	p.G626E	ENST00000398015	NM_004441.4	626	gGa/gAa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660274	227660274	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060705-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			498	730	706	0	ENST00000305123.5:c.3181G>T	p.Gly1061Trp	p.G1061W	ENST00000305123	NM_005544.2	1061	Ggg/Tgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602686	10602686	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0060705-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			173	1108	707	2	ENST00000171111.5:c.892A>T	p.Lys298Ter	p.K298*	ENST00000171111	NM_203500.1	298	Aag/Tag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18762564	18762564	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0060705-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			63	401	338	0	ENST00000266497.5:c.4059+1G>C		p.X1353_splice	ENST00000266497		1353																																																																																
IRS2	8660	MSKCC	GRCh37	13	110437269	110437269	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060705-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			623	186	190	0	ENST00000375856.3:c.1132G>C	p.Ala378Pro	p.A378P	ENST00000375856	NM_003749.2	378	Gcg/Ccg																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733122	74733122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060705-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1328	407	627	0	ENST00000359995.5:c.121G>A	p.Gly41Ser	p.G41S	ENST00000359995	NM_001195427.1	41	Ggc/Agc																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61305258	61305258	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0060705-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			367	46	263	1	ENST00000341074.5:c.868G>T	p.Glu290Ter	p.E290*	ENST00000341074	NM_002974.2	290	Gaa/Taa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251818	212251818	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060705-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			514	750	595	1	ENST00000342788.4:c.3241T>C	p.Tyr1081His	p.Y1081H	ENST00000342788	NM_005235.2	1081	Tac/Cac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980926	40980926	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0060705-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			927	244	575	2	ENST00000373198.4:c.1561-1G>T		p.X521_splice	ENST00000373198	NM_133170.3	521																																																																																
RASA1	5921	MSKCC	GRCh37	5	86564672	86564672	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060705-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1013	452	699	0	ENST00000274376.6:c.404C>A	p.Pro135His	p.P135H	ENST00000274376	NM_002890.2	135	cCc/cAc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32172082	32172082	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060705-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			829	314	636	0	ENST00000375023.3:c.2950A>C	p.Thr984Pro	p.T984P	ENST00000375023	NM_004557.3	984	Act/Cct																																																																															
CARD11	84433	MSKCC	GRCh37	7	2979424	2979424	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0060705-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			719	244	501	0	ENST00000396946.4:c.823del	p.Met275CysfsTer2	p.M275Cfs*2	ENST00000396946	NM_032415.4	275	Atg/tg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737777	145737777	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0060705-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1104	1006	786	1	ENST00000428558.2:c.3053C>G	p.Thr1018Arg	p.T1018R	ENST00000428558	NM_004260.3	1018	aCa/aGa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449832	8449832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060705-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			563	486	481	1	ENST00000356435.5:c.3881G>T	p.Arg1294Met	p.R1294M	ENST00000356435		1294	aGg/aTg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664899	138664914	+	protein_altering_variant	In_Frame_Del	DEL	TGCCGCCATCTGGCAG	TGCCGCCATCTGGCAG	A			P-0061108-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			225	29	356	0	ENST00000330315.3:c.651_666delinsT	p.Cys218_Ala222del	p.C218_A222del	ENST00000330315	NM_023067.3	217	tcCTGCCAGATGGCGGCA/tcT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0061151-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	119	447	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554225	63554225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061151-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	131	633	0	ENST00000307078.5:c.514G>A	p.Asp172Asn	p.D172N	ENST00000307078	NM_004655.3	172	Gac/Aac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874334	151874334	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0061151-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	137	465	0	ENST00000262189.6:c.8204T>G	p.Leu2735Ter	p.L2735*	ENST00000262189	NM_170606.2	2735	tTa/tGa																																																																															
CENPA	1058	MSKCC	GRCh37	2	27015628	27015656	+	protein_altering_variant	In_Frame_Del	DEL	GAGAAATATGTGTTAAATTCACTCGTGGT	GAGAAATATGTGTTAAATTCACTCGTGGT	CA			P-0061151-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	107	497	2	ENST00000335756.4:c.215_243delinsCA	p.Arg72_Gly81delinsThr	p.R72_G81delinsT	ENST00000335756	NM_001809.3	72	aGAGAAATATGTGTTAAATTCACTCGTGGT/aCA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	134	367	1	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0061254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	289	740	2	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971068	21971068	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	147	573	0	ENST00000304494.5:c.290T>C	p.Leu97Pro	p.L97P	ENST00000304494	NM_000077.4	97	cTg/cCg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845415	151845415	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0061254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	204	594	1	ENST00000262189.6:c.13597C>T	p.Arg4533Ter	p.R4533*	ENST00000262189	NM_170606.2	4533	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0061254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	152	354	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135357	30135357	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	49	499	0	ENST00000331968.5:c.461A>G	p.Tyr154Cys	p.Y154C	ENST00000331968	NM_002742.2	154	tAc/tGc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970984	21970993	+	frameshift_variant	Frame_Shift_Del	DEL	TCGCGATGGC	TCGCGATGGC	-			P-0061254-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	80	690	1	ENST00000304494.5:c.365_374del	p.Gly122ValfsTer21	p.G122Vfs*21	ENST00000304494	NM_000077.4	122	gGCCATCGCGAt/gt																																																																															
ERF	2077	MSKCC	GRCh37	19	42754079	42754080	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0061257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	51	533	1	ENST00000222329.4:c.272_273delinsTT	p.Lys91Ile	p.K91I	ENST00000222329	NM_006494.2	91	aAG/aTT																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53247024	53247024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061257-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	63	251	1	ENST00000375401.3:c.476G>A	p.Arg159His	p.R159H	ENST00000375401	NM_004187.3	159	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0061258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	49	431	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
ALK	238	MSKCC	GRCh37	2	29519919	29519919	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374136388		P-0061258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	40	431	0	ENST00000389048.3:c.1652G>A	p.Arg551Gln	p.R551Q	ENST00000389048	NM_004304.4	551	cGa/cAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162077	47162078	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0061258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	30	449	0	ENST00000409792.3:c.4048dup	p.Ser1350PhefsTer6	p.S1350Ffs*6	ENST00000409792	NM_014159.6	1350	tca/tTca																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942035	44942036	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0061258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	57	174	0	ENST00000377967.4:c.3284+2dup		p.X1095_splice	ENST00000377967	NM_021140.2	1095																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27087955	27087955	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	29	459	0	ENST00000324856.7:c.2242C>T	p.Gln748Ter	p.Q748*	ENST00000324856	NM_006015.4	748	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0061258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	22	295	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120039	70120040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0061258-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	29	437	0	ENST00000245479.2:c.1042_1043dup	p.Gln348HisfsTer36	p.Q348Hfs*36	ENST00000245479	NM_000346.3	347	-/CA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0061263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			18	35	496	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0061263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			34	80	529	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0061263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			69	101	280	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981891	63981891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			83	32	594	1	ENST00000398590.3:c.2393G>A	p.Ser798Asn	p.S798N	ENST00000398590	NM_001177387.1	798	aGt/aAt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0061264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	244	515	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0061264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	149	311	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517201		P-0061264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	99	248	1	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18960982	18960982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061264-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	294	511	0	ENST00000262803.5:c.560G>A	p.Gly187Asp	p.G187D	ENST00000262803	NM_002911.3	187	gGc/gAc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777673	9777673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1130	303	635	0	ENST00000377346.4:c.1009G>A	p.Glu337Lys	p.E337K	ENST00000377346	NM_005026.3	337	Gag/Aag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11301688	11301688	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1032	60	518	0	ENST00000361445.4:c.1463T>C	p.Met488Thr	p.M488T	ENST00000361445	NM_004958.3	488	aTg/aCg																																																																															
CDC42	998	MSKCC	GRCh37	1	22405023	22405023	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	20	129	0	ENST00000344548.3:c.52T>C	p.Cys18Arg	p.C18R	ENST00000344548	NM_001039802.1	18	Tgt/Cgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092947	27092947	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0061266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			959	62	587	0	ENST00000324856.7:c.2879-1G>A		p.X960_splice	ENST00000324856	NM_006015.4	960																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49426850	49426865	+	frameshift_variant	Frame_Shift_Del	DEL	GACTCTGCTGAAGATG	GACTCTGCTGAAGATG	-			P-0061266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			983	73	645	0	ENST00000301067.7:c.11623_11638del	p.His3875Ter	p.H3875*	ENST00000301067	NM_003482.3	3875	CATCTTCAGCAGAGTCtg/tg																																																																															
MDM2	4193	MSKCC	GRCh37	12	69203035	69203035	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1007	75	488	0	ENST00000462284.1:c.62C>G	p.Thr21Ser	p.T21S	ENST00000462284	NM_002392.5	21	aCc/aGc																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0061266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			890	141	593	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578175	7578175	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0061266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1046	50	657	1	ENST00000269305.4:c.672+2T>C		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49418435	49418436	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	C			P-0061266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			982	75	644	0	ENST00000301067.7:c.15977_15978delinsG	p.Leu5326ArgfsTer7	p.L5326Rfs*7	ENST00000301067	NM_003482.3	5326	cTT/cG																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692967	89693087	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCCTAGATTTCTATGGGGAAGTAAGGACCAGAGACAAAAAGGTAAGTTATTTTTTGATGTTTTTCCTTTCCTCTTCCTGGATCTGAGAATTTATTGGAAAACAGATTTTGGGTTTCTTTT	GCCCTAGATTTCTATGGGGAAGTAAGGACCAGAGACAAAAAGGTAAGTTATTTTTTGATGTTTTTCCTTTCCTCTTCCTGGATCTGAGAATTTATTGGAAAACAGATTTTGGGTTTCTTTT	-			P-0061267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	67	352	0	ENST00000371953.3:c.451_492+79del		p.X151_splice	ENST00000371953	NM_000314.4	151																																																																																
RB1	5925	MSKCC	GRCh37	13	49039385	49039385	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs794727372		P-0061267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	415	414	0	ENST00000267163.4:c.2370C>A	p.Tyr790Ter	p.Y790*	ENST00000267163	NM_000321.2	790	taC/taA																																																																															
PALB2	79728	MSKCC	GRCh37	16	23634452	23634452	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0061267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	274	288	0	ENST00000261584.4:c.2835-1G>T		p.X945_splice	ENST00000261584	NM_024675.3	945																																																																																
TP53	7157	MSKCC	GRCh37	17	7578403	7578422	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCGCCTCACAACCTCCGT	CAGCGCCTCACAACCTCCGT	-			P-0061267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	428	501	0	ENST00000269305.4:c.508_527del	p.Thr170ProfsTer4	p.T170Pfs*4	ENST00000269305	NM_001126112.2	170	ACGGAGGTTGTGAGGCGCTGc/c																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58734194	58734194	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1344	357	344	0	ENST00000305921.3:c.1252C>G	p.Pro418Ala	p.P418A	ENST00000305921	NM_003620.3	418	Cca/Gca																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026845	48026845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	404	457	0	ENST00000234420.5:c.1723G>A	p.Asp575Asn	p.D575N	ENST00000234420	NM_000179.2	575	Gat/Aat																																																																															
RAF1	5894	MSKCC	GRCh37	3	12641232	12641232	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	589	346	0	ENST00000251849.4:c.1066G>C	p.Gly356Arg	p.G356R	ENST00000251849	NM_002880.3	356	Ggg/Cgg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259208	89259208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	310	424	0	ENST00000336596.2:c.352G>C	p.Glu118Gln	p.E118Q	ENST00000336596	NM_005233.5	118	Gag/Cag																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964370	70964370	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0061267-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			945	67	299	0	ENST00000276594.2:c.1658A>T	p.Lys553Ile	p.K553I	ENST00000276594	NM_024504.3	553	aAa/aTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0061268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	148	368	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0061269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	299	561	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0061269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	379	699	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	159	487	0	ENST00000342988.3:c.1255G>T	p.Gly419Trp	p.G419W	ENST00000342988	NM_005359.5	419	Ggg/Tgg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120717	115120717	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	351	655	0	ENST00000257566.3:c.289G>T	p.Glu97Ter	p.E97*	ENST00000257566	NM_016569.3	97	Gaa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445202	49445202	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776110112		P-0061269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	316	879	0	ENST00000301067.7:c.2264G>A	p.Arg755Gln	p.R755Q	ENST00000301067	NM_003482.3	755	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0061269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	178	352	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412011	63412011	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	321	474	0	ENST00000330258.3:c.1156G>T	p.Glu386Ter	p.E386*	ENST00000330258	NM_152424.3	386	Gaa/Taa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55151624	55151624	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	109	419	0	ENST00000257290.5:c.2410C>T	p.Arg804Ter	p.R804*	ENST00000257290	NM_006206.4	804	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112164650	112164650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	239	408	0	ENST00000257430.4:c.1724G>T	p.Cys575Phe	p.C575F	ENST00000257430	NM_000038.5	575	tGt/tTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793663		P-0061270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	161	400	0	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0061270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	200	582	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231771	36231800	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TTCGAGGTTCTCGGGGCCCATCCACTGTGA	TTCGAGGTTCTCGGGGCCCATCCACTGTGA	-			P-0061270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	214	593	0	ENST00000300305.3:c.584_613del	p.Ile195_Arg204del	p.I195_R204del	ENST00000300305		195	aTCACAGTGGATGGGCCCCGAGAACCTCGAAga/aga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390212	89390212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061270-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	154	418	0	ENST00000336596.2:c.961G>T	p.Ala321Ser	p.A321S	ENST00000336596	NM_005233.5	321	Gct/Tct																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0061272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	230	827	1	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0061272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	241	580	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134598	2134598	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs45517340		P-0061272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	225	862	1	ENST00000219476.3:c.4375C>T	p.Arg1459Ter	p.R1459*	ENST00000219476	NM_000548.3	1459	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108141874	108141874	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587781558		P-0061272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	124	427	1	ENST00000278616.4:c.2921+1G>A		p.X974_splice	ENST00000278616	NM_000051.3	974																																																																																
PREX2	80243	MSKCC	GRCh37	8	69028137	69028137	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	129	555	0	ENST00000288368.4:c.3296A>T	p.His1099Leu	p.H1099L	ENST00000288368	NM_024870.2	1099	cAt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0061272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	219	335	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ATM	472	MSKCC	GRCh37	11	108186737	108186737	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0061272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	151	529	0	ENST00000278616.4:c.6096-1G>C		p.X2032_splice	ENST00000278616	NM_000051.3	2032																																																																																
INSR	3643	MSKCC	GRCh37	19	7267823	7267823	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	51	616	0	ENST00000302850.5:c.185T>C	p.Ile62Thr	p.I62T	ENST00000302850	NM_000208.2	62	aTa/aCa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396225	139396225	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	54	625	0	ENST00000277541.6:c.5613C>G	p.Cys1871Trp	p.C1871W	ENST00000277541	NM_017617.3	1871	tgC/tgG																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265336	152265336	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	256	505	0	ENST00000206249.3:c.790del	p.Met264CysfsTer2	p.M264Cfs*2	ENST00000206249	NM_000125.3	263	agA/ag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39937164	39937164	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061284-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	190	322	0	ENST00000378444.4:c.19del	p.Leu7CysfsTer9	p.L7Cfs*9	ENST00000378444	NM_001123385.1	7	Ctg/tg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440379	52440379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061284-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	205	436	1	ENST00000460680.1:c.673G>A	p.Asp225Asn	p.D225N	ENST00000460680	NM_004656.3	225	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579559	7579559	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061284-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	236	471	0	ENST00000269305.4:c.128del	p.Leu43Ter	p.L43*	ENST00000269305	NM_001126112.2	43	tTg/tg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0061284-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	201	237	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295346	1295346	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0061284-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	166	471	0				ENST00000310581	NM_198253.2																																																																																	
CDKN2A	1029	MSKCC	GRCh37	9	21971203	21971219	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATGACCTGCCAGAGAGA	ATGACCTGCCAGAGAGA	-			P-0061284-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	173	411	0	ENST00000304494.5:c.151-12_155del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48603070	48603085	+	frameshift_variant	Frame_Shift_Del	DEL	AGCAGCTGCCCAGGCA	AGCAGCTGCCCAGGCA	GC			P-0061284-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	319	313	1	ENST00000342988.3:c.1371_1386delinsGC	p.Ala458ArgfsTer31	p.A458Rfs*31	ENST00000342988	NM_005359.5	457	gcAGCAGCTGCCCAGGCA/gcGC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521315	187521315	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0061285-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	87	435	0	ENST00000441802.2:c.11840del	p.Asp3947ValfsTer36	p.D3947Vfs*36	ENST00000441802	NM_005245.3	3947	gAt/gt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271274	38271274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061285-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	142	528	0	ENST00000425967.3:c.2434C>T	p.Pro812Ser	p.P812S	ENST00000425967	NM_001174067.1	812	Ccc/Tcc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162741988	162741988	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061285-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	156	494	0	ENST00000367921.3:c.1679G>C	p.Arg560Thr	p.R560T	ENST00000367921	NM_006182.2	560	aGg/aCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427981	49427982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCG			P-0061285-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	160	467	0	ENST00000301067.7:c.10606_10608dup	p.Arg3536dup	p.R3536dup	ENST00000301067	NM_003482.3	3536	-/CGC																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61323047	61323047	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061285-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	10	557	0	ENST00000283752.5:c.1017G>T	p.Glu339Asp	p.E339D	ENST00000283752	NM_006919.2	339	gaG/gaT																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2033013	2033013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061285-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	27	367	0	ENST00000382203.1:c.287G>A	p.Gly96Asp	p.G96D	ENST00000382203		96	gGc/gAc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223355	53223355	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061285-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	10	205	0	ENST00000375401.3:c.4004C>A	p.Pro1335His	p.P1335H	ENST00000375401	NM_004187.3	1335	cCc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42041895	42041900	+	frameshift_variant	Frame_Shift_Del	DEL	TCATTT	TCATTT	A			P-0061285-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			81	108	441	0	ENST00000219905.7:c.6090_6095delinsA	p.Asp2030GlufsTer3	p.D2030Efs*3	ENST00000219905	NM_001164273.1	2030	gaTCATTTg/gaAg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573196	64573196	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061289-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	177	551	0	ENST00000337652.1:c.1111G>T	p.Glu371Ter	p.E371*	ENST00000337652	NM_130803.2	371	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0061291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	22	468	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217852	7217855	+	frameshift_variant	Frame_Shift_Del	DEL	TTTC	TTTC	-			P-0061291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			702	41	480	0	ENST00000380728.2:c.156_159del	p.Lys53ArgfsTer9	p.K53Rfs*9	ENST00000380728		52	aaGAAA/aa																																																																															
MST1R	4486	MSKCC	GRCh37	3	49927381	49927381	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0061291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	38	495	0	ENST00000296474.3:c.3923A>T	p.Gln1308Leu	p.Q1308L	ENST00000296474	NM_002447.2	1308	cAg/cTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006884	47006884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	28	213	0	ENST00000329236.7:c.4G>A	p.Glu2Lys	p.E2K	ENST00000329236	NM_001204466.1	2	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261121	16261121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	75	487	0	ENST00000375759.3:c.8386C>T	p.Arg2796Cys	p.R2796C	ENST00000375759	NM_015001.2	2796	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0061294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	58	242	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986542	36986543	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0061294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	68	483	0	ENST00000354822.5:c.1146dup	p.Ser383LeufsTer56	p.S383Lfs*56	ENST00000354822	NM_001079668.2	382	-/C																																																																															
KDR	3791	MSKCC	GRCh37	4	55964348	55964348	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	54	301	0	ENST00000263923.4:c.2465A>G	p.Tyr822Cys	p.Y822C	ENST00000263923	NM_002253.2	822	tAt/tGt																																																																															
ARAF	369	MSKCC	GRCh37	X	47430757	47430758	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0061294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	64	422	0	ENST00000377045.4:c.1722_1723delinsAA	p.Pro575Thr	p.P575T	ENST00000377045	NM_001654.4	574	ctCCcc/ctAAcc																																																																															
ATRX	546	MSKCC	GRCh37	X	76937455	76937456	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0061294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	78	387	0	ENST00000373344.5:c.3292_3293delinsCT	p.Gly1098Leu	p.G1098L	ENST00000373344	NM_000489.3	1098	GGa/CTa																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123480538	123480538	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	62	375	0	ENST00000371139.4:c.46G>T	p.Gly16Cys	p.G16C	ENST00000371139	NM_001114937.2	16	Ggc/Tgc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987030	36987031	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	G			P-0061294-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	32	315	0	ENST00000354822.5:c.658_659delinsC	p.Glu220ArgfsTer8	p.E220Rfs*8	ENST00000354822	NM_001079668.2	220	GAg/Cg																																																																															
AKT2	208	MSKCC	GRCh37	19	40741796	40741796	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0061067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	61	981	0	ENST00000392038.2:c.1175+1G>A		p.X392_splice	ENST00000392038	NM_001626.4	392																																																																																
BCOR	54880	MSKCC	GRCh37	X	39932819	39932819	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764515953		P-0061067-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	110	1248	0	ENST00000378444.4:c.1780G>A	p.Val594Ile	p.V594I	ENST00000378444	NM_001123385.1	594	Gtt/Att																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828126	243828126	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	118	262	0	ENST00000263826.5:c.232C>A	p.Gln78Lys	p.Q78K	ENST00000263826	NM_005465.4	78	Cag/Aag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519971		P-0061068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	771	605	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112111357	112111358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0061068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			33	97	212	0	ENST00000257430.4:c.458dup	p.Glu154GlyfsTer14	p.E154Gfs*14	ENST00000257430	NM_000038.5	152	gaa/gAaa																																																																															
ATM	472	MSKCC	GRCh37	11	108151776	108151777	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	C			P-0061068-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	233	324	0	ENST00000278616.4:c.3457_3458delinsC	p.Val1153LeufsTer3	p.V1153Lfs*3	ENST00000278616	NM_000051.3	1153	GTt/Ct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249007	+	missense_variant	Missense_Mutation	ONP	GCG	GCG	TCT			P-0061127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	73	355	0	ENST00000275493.2:c.2303_2305delinsTCT	p.Ser768_Val769delinsIleLeu	p.S768_V769delinsIL	ENST00000275493	NM_005228.3	768	aGCGtg/aTCTtg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519337	176519337	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758837002		P-0061127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	75	415	0	ENST00000292408.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000292408	NM_213647.1	248	cGg/cAg																																																																															
MGA	23269	MSKCC	GRCh37	15	42041857	42041857	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	59	441	0	ENST00000219905.7:c.6052G>T	p.Glu2018Ter	p.E2018*	ENST00000219905	NM_001164273.1	2018	Gaa/Taa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528590	8528590	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0061127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	54	324	1	ENST00000356435.5:c.541+1G>T		p.X181_splice	ENST00000356435		181																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120506391	120506391	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	91	377	0	ENST00000256646.2:c.1721G>T	p.Cys574Phe	p.C574F	ENST00000256646	NM_024408.3	574	tGt/tTt																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86545017	86545017	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	53	374	0	ENST00000262426.4:c.842G>T	p.Gly281Val	p.G281V	ENST00000262426	NM_001451.2	281	gGc/gTc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149433946	149433946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	132	428	0	ENST00000286301.3:c.2702C>A	p.Pro901His	p.P901H	ENST00000286301	NM_005211.3	901	cCc/cAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140434542	140434542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			359	75	281	0	ENST00000288602.6:c.2156G>T	p.Arg719Leu	p.R719L	ENST00000288602	NM_004333.4	719	cGc/cTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028773	47028775	+	frameshift_variant	Frame_Shift_Del	DEL	GTG	GTG	TT			P-0061127-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	84	455	0	ENST00000329236.7:c.77_79delinsTT	p.Gly26ValfsTer59	p.G26Vfs*59	ENST00000329236	NM_001204466.1	26	gGTGgg/gTTgg																																																																															
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137852581		P-0061131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			94	221	242	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0061131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	188	478	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870675	12870897	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	CTTCCGAGAGGGGTTCGGGCTGCGTAGGGGCGCTTTGTTTTGTTCGGTTTTGTTTTTTTGAGAGTGCGAGAGAGGCGGTCGTGCAGACCCGGGAGAAAGATGTCAAACGTGCGAGTGTCTAACGGGAGCCCTAGCCTGGAGCGGATGGACGCCAGGCAGGCGGAGCACCCCAAGCCCTCGGCCTGCAGGAACCTCTTCGGCCCGGTGGACCACGAAGAGTTAA	CTTCCGAGAGGGGTTCGGGCTGCGTAGGGGCGCTTTGTTTTGTTCGGTTTTGTTTTTTTGAGAGTGCGAGAGAGGCGGTCGTGCAGACCCGGGAGAAAGATGTCAAACGTGCGAGTGTCTAACGGGAGCCCTAGCCTGGAGCGGATGGACGCCAGGCAGGCGGAGCACCCCAAGCCCTCGGCCTGCAGGAACCTCTTCGGCCCGGTGGACCACGAAGAGTTAA	-			P-0061131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	154	181	0	ENST00000228872.4:c.-98_125del		p.*33*	ENST00000228872	NM_004064.3																																																																																	
GRIN2A	2903	MSKCC	GRCh37	16	9857804	9857805	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0061131-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	246	644	0	ENST00000330684.3:c.3596dup	p.His1200AlafsTer3	p.H1200Afs*3	ENST00000330684	NM_001134407.1	1199	ccg/ccCg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933460	39933463	+	frameshift_variant	Frame_Shift_Del	DEL	CTAA	CTAA	-	rs864309702		P-0061141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	85	268	0	ENST00000378444.4:c.1136_1139del	p.Val379AlafsTer62	p.V379Afs*62	ENST00000378444	NM_001123385.1	379	gTTAGc/gc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99193519	99193519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	44	528	0	ENST00000074304.5:c.2714C>T	p.Ser905Leu	p.S905L	ENST00000074304	NM_001134224.1	905	tCg/tTg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115262316	115262317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0061141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	49	409	0	ENST00000438362.2:c.2237dup	p.His747ProfsTer10	p.H747Pfs*10	ENST00000438362	NM_001242891.1	746	ttc/ttTc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906769	50906769	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061141-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	69	451	0	ENST00000440232.2:c.1157G>T	p.Arg386Leu	p.R386L	ENST00000440232	NM_002691.3	386	cGt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578250	7578250	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1131691011		P-0061144-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	120	473	0	ENST00000269305.4:c.599del	p.Asn200IlefsTer47	p.N200Ifs*47	ENST00000269305	NM_001126112.2	200	aAt/at																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061012	38061033	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGCCGGCGCGCCCTCTAGCT	GGGGCCGGCGCGCCCTCTAGCT	-			P-0061144-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	147	541	0	ENST00000250448.2:c.956_977del	p.Gln319ProfsTer24	p.Q319Pfs*24	ENST00000250448	NM_004496.3	319	cAGCTAGAGGGCGCGCCGGCCCCc/cc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28963995	28963995	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	57	411	0	ENST00000282397.4:c.1907G>T	p.Cys636Phe	p.C636F	ENST00000282397	NM_002019.4	636	tGc/tTc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962298	2962298	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769577430		P-0061148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	79	385	1	ENST00000396946.4:c.2239G>A	p.Val747Ile	p.V747I	ENST00000396946	NM_032415.4	747	Gtc/Atc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72163774	72163774	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	65	382	0	ENST00000357731.5:c.584G>T	p.Arg195Met	p.R195M	ENST00000357731	NM_173808.2	195	aGg/aTg																																																																															
ATM	472	MSKCC	GRCh37	11	108121799	108121800	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0061148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	82	423	0	ENST00000278616.4:c.1607_1607+1delinsTT		p.X536_splice	ENST00000278616	NM_000051.3	536																																																																																
CCND2	894	MSKCC	GRCh37	12	4398133	4398133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	50	408	0	ENST00000261254.3:c.697G>T	p.Ala233Ser	p.A233S	ENST00000261254	NM_001759.3	233	Gct/Tct																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435523	18435523	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	81	428	0	ENST00000266497.5:c.509del	p.Gly170AspfsTer29	p.G170Dfs*29	ENST00000266497		170	Gga/ga																																																																															
MGA	23269	MSKCC	GRCh37	15	41991088	41991088	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	79	341	0	ENST00000219905.7:c.2043del	p.Thr682GlnfsTer29	p.T682Qfs*29	ENST00000219905	NM_001164273.1	681	Ggg/gg																																																																															
MGA	23269	MSKCC	GRCh37	15	42000056	42000057	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GG			P-0061148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	84	433	0	ENST00000219905.7:c.2320_2320+1dup		p.-773fs	ENST00000219905	NM_001164273.1	773	-/GG																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351302	89351302	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0061148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	80	602	0	ENST00000301030.4:c.1648A>T	p.Asn550Tyr	p.N550Y	ENST00000301030	NM_001256183.1	550	Aat/Tat																																																																															
NF1	4763	MSKCC	GRCh37	17	29562746	29562746	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs199474742		P-0061148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	93	406	0	ENST00000358273.4:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000358273	NM_001042492.2	1276	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29663807	29663807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	110	389	0	ENST00000358273.4:c.6302C>T	p.Pro2101Leu	p.P2101L	ENST00000358273	NM_001042492.2	2101	cCc/cTc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58701013	58701013	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0061148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	98	424	0	ENST00000305921.3:c.604G>C	p.Asp202His	p.D202H	ENST00000305921	NM_003620.3	202	Gac/Cac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498477	89498477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	68	378	0	ENST00000336596.2:c.2449G>A	p.Val817Met	p.V817M	ENST00000336596	NM_005233.5	817	Gtg/Atg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528604	89528604	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0061148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	99	378	0	ENST00000336596.2:c.2904C>G	p.Ser968Arg	p.S968R	ENST00000336596	NM_005233.5	968	agC/agG																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750589	57750589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	75	391	0	ENST00000274289.3:c.1879C>T	p.His627Tyr	p.H627Y	ENST00000274289	NM_006622.3	627	Cat/Tat																																																																															
ROS1	6098	MSKCC	GRCh37	6	117632231	117632231	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0061148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	80	335	0	ENST00000368508.3:c.6185A>C	p.Asp2062Ala	p.D2062A	ENST00000368508	NM_002944.2	2062	gAt/gCt																																																																															
ETV1	2115	MSKCC	GRCh37	7	13940465	13940465	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0061148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	76	315	0	ENST00000405192.2:c.1042-1G>T		p.X348_splice	ENST00000405192	NM_001163147.1	348																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8319965	8319965	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0061148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	82	385	0	ENST00000356435.5:c.5536G>C	p.Ala1846Pro	p.A1846P	ENST00000356435		1846	Gcg/Ccg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	8	584	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	60	705	6	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs750808726		P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	26	826	0	ENST00000261937.6:c.1267dup	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1181132297		P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	27	665	0	ENST00000342505.4:c.1016del	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																															
PAK1	5058	MSKCC	GRCh37	11	77069992	77069992	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	39	696	0	ENST00000356341.3:c.548A>C	p.Asp183Ala	p.D183A	ENST00000356341	NM_002576.4	183	gAt/gCt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	83	750	2	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2108788	2108788	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	99	635	1	ENST00000219476.3:c.894del	p.Phe298LeufsTer65	p.F298Lfs*65	ENST00000219476	NM_000548.3	297	Ttt/tt																																																																															
PMS2	5395	MSKCC	GRCh37	7	6043355	6043355	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188006077		P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	22	109	0	ENST00000265849.7:c.319C>T	p.Arg107Trp	p.R107W	ENST00000265849	NM_000535.5	107	Cgg/Tgg																																																																															
ABL1	25	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	76	556	1	ENST00000318560.5:c.2352del	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	98	701	3	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198265061	198265061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	83	565	0	ENST00000335508.6:c.2816G>A	p.Arg939His	p.R939H	ENST00000335508	NM_012433.2	939	cGt/cAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857196	9857196	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs74935155		P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	101	723	0	ENST00000330684.3:c.4205G>A	p.Arg1402Gln	p.R1402Q	ENST00000330684	NM_001134407.1	1402	cGg/cAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692929	89692929	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	52	629	0	ENST00000371953.3:c.413A>G	p.Tyr138Cys	p.Y138C	ENST00000371953	NM_000314.4	138	tAt/tGt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164838	36164839	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	28	719	0	ENST00000300305.3:c.1036dup	p.Arg346ProfsTer254	p.R346Pfs*254	ENST00000300305		346	cgc/cCgc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211580	98211580	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762040036		P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	86	568	0	ENST00000331920.6:c.3575G>A	p.Arg1192His	p.R1192H	ENST00000331920	NM_000264.3	1192	cGc/cAc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	39	859	1	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636997	176636997	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	77	717	0	ENST00000439151.2:c.1597C>A	p.Leu533Ile	p.L533I	ENST00000439151	NM_022455.4	533	Ctt/Att																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845292	42845294	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	67	627	0	ENST00000398585.3:c.968_970del	p.Ile323del	p.I323del	ENST00000398585	NM_001135099.1	323	aTCAcc/acc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248737	212248737	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	21	648	0	ENST00000342788.4:c.3530del	p.Asn1177MetfsTer27	p.N1177Mfs*27	ENST00000342788	NM_005235.2	1177	aAt/at																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258943	16258944	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	130	808	0	ENST00000375759.3:c.6215dup	p.Asn2072LysfsTer51	p.N2072Kfs*51	ENST00000375759	NM_015001.2	2070	gaa/gAaa																																																																															
ABL1	25	MSKCC	GRCh37	9	133756012	133756012	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs574660646		P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	81	636	0	ENST00000318560.5:c.1639G>A	p.Val547Met	p.V547M	ENST00000318560	NM_005157.4	547	Gtg/Atg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273026	18273026	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	26	651	3	ENST00000222254.8:c.921del	p.Lys308ArgfsTer33	p.K308Rfs*33	ENST00000222254	NM_005027.3	306	Ccc/cc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141551412	141551412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	28	532	0	ENST00000220592.5:c.1885G>A	p.Val629Met	p.V629M	ENST00000220592	NM_012154.3	629	Gtg/Atg																																																																															
POLE	5426	MSKCC	GRCh37	12	133252024	133252024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	93	646	1	ENST00000320574.5:c.1186del	p.Glu396SerfsTer16	p.E396Sfs*16	ENST00000320574	NM_006231.2	396	Gag/ag																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467614	50467614	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	22	479	0	ENST00000331340.3:c.851-2A>G		p.X284_splice	ENST00000331340	NM_006060.4	284																																																																																
RB1	5925	MSKCC	GRCh37	13	48878058	48878058	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1226865525		P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	51	594	1	ENST00000267163.4:c.13del	p.Thr5ProfsTer60	p.T5Pfs*60	ENST00000267163	NM_000321.2	4	Aaa/aa																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981613	101981614	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	31	695	0	ENST00000282441.5:c.40dup	p.Gln14ProfsTer98	p.Q14Pfs*98	ENST00000282441	NM_001130145.2	12	gcc/gCcc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73342975	73342975	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757306363		P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	21	429	0	ENST00000377767.4:c.1831C>T	p.Arg611Cys	p.R611C	ENST00000377767	NM_014953.3	611	Cgt/Tgt																																																																															
FLCN	201163	MSKCC	GRCh37	17	17125885	17125885	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1257705335		P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	39	630	0	ENST00000285071.4:c.709G>A	p.Ala237Thr	p.A237T	ENST00000285071	NM_144997.5	237	Gcc/Acc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120510194	120510194	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199565938		P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	97	614	0	ENST00000256646.2:c.1315G>A	p.Ala439Thr	p.A439T	ENST00000256646	NM_024408.3	439	Gcc/Acc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226704	2226704	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750419812		P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	89	823	0	ENST00000398665.3:c.4184C>T	p.Pro1395Leu	p.P1395L	ENST00000398665	NM_032482.2	1395	cCg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211753	36211753	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374554860		P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	28	767	2	ENST00000222270.7:c.1504G>A	p.Ala502Thr	p.A502T	ENST00000222270	NM_014727.1	502	Gcc/Acc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416795	416795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	26	702	0	ENST00000399788.2:c.3755G>A	p.Arg1252His	p.R1252H	ENST00000399788	NM_001042603.1	1252	cGt/cAt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123181290	123181290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	52	252	0	ENST00000218089.9:c.754C>T	p.Arg252Trp	p.R252W	ENST00000218089	NM_001042749.1	252	Cgg/Tgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831029	72831029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	95	693	1	ENST00000268489.5:c.5552C>A	p.Pro1851Gln	p.P1851Q	ENST00000268489	NM_006885.3	1851	cCg/cAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624244	89624245	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	20	201	0	ENST00000371953.3:c.21_22del	p.Glu7AspfsTer3	p.E7Dfs*3	ENST00000371953	NM_000314.4	6	aaAGag/aaag																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206649530	206649530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	131	676	1	ENST00000367120.3:c.365G>A	p.Gly122Asp	p.G122D	ENST00000367120	NM_014002.3	122	gGc/gAc																																																																															
ATM	472	MSKCC	GRCh37	11	108164151	108164151	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1408892416		P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	71	511	0	ENST00000278616.4:c.4723C>T	p.Arg1575Cys	p.R1575C	ENST00000278616	NM_000051.3	1575	Cgt/Tgt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16052794	16052795	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	17	305	0	ENST00000268712.3:c.879dup	p.Lys294Ter	p.K294*	ENST00000268712	NM_006311.3	293	-/T																																																																															
NADK	65220	MSKCC	GRCh37	1	1687996	1687996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200152611		P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	110	718	0	ENST00000344463.4:c.880G>A	p.Ala294Thr	p.A294T	ENST00000344463		294	Gcc/Acc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257034	16257035	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	85	688	0	ENST00000375759.3:c.4301_4302del	p.Phe1434CysfsTer4	p.F1434Cfs*4	ENST00000375759	NM_015001.2	1433	tcTTtt/tctt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156834186	156834186	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs543320028		P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	49	679	0	ENST00000524377.1:c.253C>T	p.Arg85Cys	p.R85C	ENST00000524377	NM_002529.3	85	Cgt/Tgt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852351	63852351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	29	736	0	ENST00000279873.7:c.3129G>T	p.Lys1043Asn	p.K1043N	ENST00000279873	NM_032199.2	1043	aaG/aaT																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710617	114710619	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	89	603	0	ENST00000543371.1:c.105_107del	p.Ser36del	p.S36del	ENST00000543371	NM_001198531.1	34	aaCTCc/aac																																																																															
EED	8726	MSKCC	GRCh37	11	85988147	85988147	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	69	575	0	ENST00000263360.6:c.1092G>A	p.Trp364Ter	p.W364*	ENST00000263360	NM_003797.3	364	tgG/tgA																																																																															
RAB35	11021	MSKCC	GRCh37	12	120536832	120536832	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	22	556	0	ENST00000229340.5:c.352+2T>C		p.X118_splice	ENST00000229340	NM_006861.6	118																																																																																
ERCC5	2073	MSKCC	GRCh37	13	103515139	103515139	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	49	718	1	ENST00000355739.4:c.1640A>G	p.Asn547Ser	p.N547S	ENST00000355739	NM_000123.3	547	aAc/aGc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435931	110435931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	83	706	0	ENST00000375856.3:c.2470G>A	p.Val824Met	p.V824M	ENST00000375856	NM_003749.2	824	Gtg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832450	72832450	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	124	673	0	ENST00000268489.5:c.4131del	p.Gln1378ArgfsTer47	p.Q1378Rfs*47	ENST00000268489	NM_006885.3	1377	ctT/ct																																																																															
INSR	3643	MSKCC	GRCh37	19	7141774	7141774	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200110540		P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	91	567	0	ENST00000302850.5:c.2596G>A	p.Val866Ile	p.V866I	ENST00000302850	NM_000208.2	866	Gtc/Atc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265340	10265341	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	33	746	0	ENST00000340748.4:c.1705dup	p.Asp569GlyfsTer3	p.D569Gfs*3	ENST00000340748		569	gac/gGac																																																																															
CIC	23152	MSKCC	GRCh37	19	42794626	42794627	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	31	650	0	ENST00000575354.2:c.1711dup	p.Leu571ProfsTer119	p.L571Pfs*119	ENST00000575354	NM_015125.3	569	ggc/ggCc																																																																															
CIC	23152	MSKCC	GRCh37	19	42797776	42797777	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	81	702	0	ENST00000575354.2:c.3831_3832del	p.Val1278ProfsTer65	p.V1278Pfs*65	ENST00000575354	NM_015125.3	1276	tgGCgc/tggc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61726012	61726013	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	59	457	0	ENST00000401558.2:c.626_627del	p.Cys209SerfsTer34	p.C209Sfs*34	ENST00000401558	NM_003400.3	209	tGT/t																																																																															
REST	5978	MSKCC	GRCh37	4	57776808	57776808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	86	575	1	ENST00000309042.7:c.4G>A	p.Ala2Thr	p.A2T	ENST00000309042	NM_005612.4	2	Gcc/Acc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295960	1295960	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	62	839	0				ENST00000310581	NM_198253.2																																																																																	
NOTCH4	4855	MSKCC	GRCh37	6	32170334	32170334	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761986491		P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	72	660	0	ENST00000375023.3:c.3274G>A	p.Gly1092Ser	p.G1092S	ENST00000375023	NM_004557.3	1092	Ggc/Agc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508306	106508306	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	87	675	0	ENST00000359195.3:c.300T>A	p.Tyr100Ter	p.Y100*	ENST00000359195	NM_002649.2	100	taT/taA																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29195838	29195838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	93	657	0	ENST00000240100.2:c.760G>A	p.Asp254Asn	p.D254N	ENST00000240100	NM_001394.6	254	Gac/Aac																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87549200	87549200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	51	508	0	ENST00000277120.3:c.1757C>T	p.Ala586Val	p.A586V	ENST00000277120		586	gCa/gTa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87636261	87636261	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0061209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	32	664	0	ENST00000277120.3:c.2426A>G	p.Glu809Gly	p.E809G	ENST00000277120		809	gAg/gGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603044	48603044	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781359		P-0061214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	95	342	0	ENST00000342988.3:c.1345C>T	p.Gln449Ter	p.Q449*	ENST00000342988	NM_005359.5	449	Cag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971035	21971035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	120	593	0	ENST00000304494.5:c.323A>G	p.Asp108Gly	p.D108G	ENST00000304494	NM_000077.4	108	gAt/gGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0061214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	74	345	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440011	56440011	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0061214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	84	456	0	ENST00000407977.2:c.583-2A>T		p.X195_splice	ENST00000407977		195																																																																																
TP53	7157	MSKCC	GRCh37	17	7576899	7576900	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0061214-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	114	643	0	ENST00000269305.4:c.946_947delinsG	p.Pro316AlafsTer29	p.P316Afs*29	ENST00000269305	NM_001126112.2	316	CCc/Gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0061216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	90	497	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913288		P-0061216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	59	516	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0061216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	43	470	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	104	461	0	ENST00000342988.3:c.1255G>T	p.Gly419Trp	p.G419W	ENST00000342988	NM_005359.5	419	Ggg/Tgg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043464	180043464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	146	562	0	ENST00000261937.6:c.3122G>A	p.Arg1041Gln	p.R1041Q	ENST00000261937	NM_182925.4	1041	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175533	112175533	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0061216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	189	629	0	ENST00000257430.4:c.4243del	p.Ser1415ValfsTer4	p.S1415Vfs*4	ENST00000257430	NM_000038.5	1414	gtA/gt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032523	12032523	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	42	318	0	ENST00000353533.5:c.959T>C	p.Val320Ala	p.V320A	ENST00000353533	NM_003010.3	320	gTc/gCc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99154381	99154381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	115	548	0	ENST00000074304.5:c.523G>A	p.Glu175Lys	p.E175K	ENST00000074304	NM_001134224.1	175	Gag/Aag																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719769	190719769	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0061216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	73	512	0	ENST00000441310.2:c.1771A>C	p.Ile591Leu	p.I591L	ENST00000441310	NM_000534.4	591	Ata/Cta																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46262804	46262804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	53	538	0	ENST00000371998.3:c.977G>A	p.Gly326Asp	p.G326D	ENST00000371998		326	gGc/gAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249465	153249465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	87	513	0	ENST00000281708.4:c.1313C>T	p.Ser438Phe	p.S438F	ENST00000281708	NM_033632.3	438	tCt/tTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0061217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	146	390	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0061217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	91	506	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040794	47040794	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0061217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	139	651	0	ENST00000329236.7:c.1195G>T	p.Gly399Ter	p.G399*	ENST00000329236	NM_001204466.1	399	Gga/Tga																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742522	17742522	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	88	416	0	ENST00000250003.3:c.704C>A	p.Pro235His	p.P235H	ENST00000250003	NM_002478.4	235	cCc/cAc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67670620	67670620	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0061217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	122	486	0	ENST00000264010.4:c.1865A>T	p.Asn622Ile	p.N622I	ENST00000264010	NM_006565.3	622	aAt/aTt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63531840	63531840	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0061217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	125	479	0	ENST00000307078.5:c.2142-1G>T		p.X714_splice	ENST00000307078	NM_004655.3	714																																																																																
AMER1	139285	MSKCC	GRCh37	X	63409802	63409802	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0061217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	107	574	0	ENST00000330258.3:c.3365C>A	p.Thr1122Asn	p.T1122N	ENST00000330258	NM_152424.3	1122	aCc/aAc																																																																															
REST	5978	MSKCC	GRCh37	4	57796387	57796388	+	frameshift_variant	Frame_Shift_Ins	INS	GG	GG	TGT			P-0061217-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	152	478	0	ENST00000309042.7:c.1363_1364delinsTGT	p.Gly455CysfsTer9	p.G455Cfs*9	ENST00000309042	NM_005612.4	455	GGg/TGTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0049508-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			16	10	370	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14303239	14303242	+	frameshift_variant	Frame_Shift_Del	DEL	CTAA	CTAA	-			P-0050988-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			417	31	323	0	ENST00000256196.4:c.433_436del	p.Leu145HisfsTer6	p.L145Hfs*6	ENST00000256196		145	TTAGca/ca																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120662	115120662	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050988-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			589	34	589	0	ENST00000257566.3:c.344A>T	p.Gln115Leu	p.Q115L	ENST00000257566	NM_016569.3	115	cAg/cTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29665824	29665824	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0050988-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			319	33	190	0	ENST00000358273.4:c.6921+1G>T		p.X2307_splice	ENST00000358273	NM_001042492.2	2307																																																																																
GATA1	2623	MSKCC	GRCh37	X	48652377	48652377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050988-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			492	40	608	0	ENST00000376670.3:c.1048G>A	p.Ala350Thr	p.A350T	ENST00000376670	NM_002049.3	350	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519981		P-0054800-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			280	427	461	0	ENST00000269305.4:c.712T>C	p.Cys238Arg	p.C238R	ENST00000269305	NM_001126112.2	238	Tgt/Cgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054800-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	428	308	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459531	50459531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			62	13	527	0	ENST00000331340.3:c.820C>T	p.Arg274Cys	p.R274C	ENST00000331340	NM_006060.4	274	Cgt/Tgt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375142	31375142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs537913125		P-0055475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			75	19	810	0	ENST00000328111.2:c.539C>T	p.Thr180Met	p.T180M	ENST00000328111	NM_006892.3	180	aCg/aTg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141551418	141551418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			128	15	603	0	ENST00000220592.5:c.1879G>A	p.Ala627Thr	p.A627T	ENST00000220592	NM_012154.3	627	Gcc/Acc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120430	70120431	+	frameshift_variant	Frame_Shift_Ins	INS	AC	AC	GTA			P-0055475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	25	803	0	ENST00000245479.2:c.1432_1433delinsGTA	p.Thr478ValfsTer100	p.T478Vfs*100	ENST00000245479	NM_000346.3	478	ACc/GTAc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21349286	21349286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	26	802	1	ENST00000215739.8:c.1913G>A	p.Arg638His	p.R638H	ENST00000215739	NM_006767.3	638	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			585	361	713	1	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343685	343685	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs750092964		P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	123	612	0	ENST00000262320.3:c.1989G>T	p.Glu663Asp	p.E663D	ENST00000262320	NM_003502.3	663	gaG/gaT																																																																															
RB1	5925	MSKCC	GRCh37	13	48954299	48954299	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			181	54	183	0	ENST00000267163.4:c.1422-2A>G		p.X474_splice	ENST00000267163	NM_000321.2	474																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36215923	36215923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			714	215	616	0	ENST00000222270.7:c.3463C>T	p.Pro1155Ser	p.P1155S	ENST00000222270	NM_014727.1	1155	Ccc/Tcc																																																																															
KIT	3815	MSKCC	GRCh37	4	55602942	55602942	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs374440815		P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			487	66	464	0	ENST00000288135.5:c.2652G>T	p.Lys884Asn	p.K884N	ENST00000288135	NM_000222.2	884	aaG/aaT																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472661	88472662	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			637	80	557	1	ENST00000360948.2:c.1893_1894delinsAA	p.His632Asn	p.H632N	ENST00000360948	NM_001012338.2	631	gcCCat/gcAAat																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602445	10602445	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1244523465		P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			677	317	786	0	ENST00000171111.5:c.1133G>A	p.Gly378Asp	p.G378D	ENST00000171111	NM_203500.1	378	gGc/gAc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175956114	175956114	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			423	98	366	0	ENST00000367669.3:c.2098G>C	p.Val700Leu	p.V700L	ENST00000367669	NM_022457.5	700	Gtt/Ctt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206665040	206665040	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			647	248	551	0	ENST00000367120.3:c.1793A>G	p.Gln598Arg	p.Q598R	ENST00000367120	NM_014002.3	598	cAg/cGg																																																																															
PARP1	142	MSKCC	GRCh37	1	226549764	226549764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			512	185	419	0	ENST00000366794.5:c.2869G>T	p.Asp957Tyr	p.D957Y	ENST00000366794	NM_001618.3	957	Gat/Tat																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118925	115118929	+	frameshift_variant	Frame_Shift_Del	DEL	CTCAC	CTCAC	-			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			462	88	383	0	ENST00000257566.3:c.412_416del	p.Val138MetfsTer6	p.V138Mfs*6	ENST00000257566	NM_016569.3	138	GTGAGa/a																																																																															
MGA	23269	MSKCC	GRCh37	15	42041732	42041733	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			554	166	609	0	ENST00000219905.7:c.5927_5928del	p.Asp1976AlafsTer4	p.D1976Afs*4	ENST00000219905	NM_001164273.1	1976	gAC/g																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30323859	30323859	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			276	90	233	0	ENST00000322652.5:c.1837G>T	p.Val613Leu	p.V613L	ENST00000322652	NM_015355.2	613	Gtg/Ttg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435276	56435276	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			906	122	806	0	ENST00000407977.2:c.1861G>T	p.Glu621Ter	p.E621*	ENST00000407977		621	Gag/Tag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435295	56435295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			868	135	775	0	ENST00000407977.2:c.1842G>T	p.Gln614His	p.Q614H	ENST00000407977		614	caG/caT																																																																															
AKT2	208	MSKCC	GRCh37	19	40762867	40762867	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			700	197	608	0	ENST00000392038.2:c.141G>T	p.Gln47His	p.Q47H	ENST00000392038	NM_001626.4	47	caG/caT																																																																															
CIC	23152	MSKCC	GRCh37	19	42793087	42793087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			797	112	608	0	ENST00000575354.2:c.979G>A	p.Asp327Asn	p.D327N	ENST00000575354	NM_015125.3	327	Gac/Aac																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424520	47424520	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			489	202	571	0	ENST00000404338.3:c.2588G>T	p.Arg863Leu	p.R863L	ENST00000404338	NM_004491.4	863	cGt/cTt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99160381	99160381	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			723	112	643	0	ENST00000074304.5:c.860G>T	p.Trp287Leu	p.W287L	ENST00000074304	NM_001134224.1	287	tGg/tTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790100	40790100	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			687	130	585	0	ENST00000373198.4:c.2631G>T	p.Met877Ile	p.M877I	ENST00000373198	NM_133170.3	877	atG/atT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66242742	66242742	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			540	86	538	0	ENST00000273854.3:c.1830C>G	p.Cys610Trp	p.C610W	ENST00000273854	NM_004439.5	610	tgC/tgG																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143326407	143326407	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			477	66	483	0	ENST00000262992.4:c.207C>A	p.His69Gln	p.H69Q	ENST00000262992	NM_001101669.1	69	caC/caA																																																																															
GAB1	2549	MSKCC	GRCh37	4	144359244	144359244	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1272716603		P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			510	85	478	0	ENST00000262995.4:c.686A>T	p.Lys229Ile	p.K229I	ENST00000262995	NM_207123.2	229	aAa/aTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521072	187521072	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			614	80	588	0	ENST00000441802.2:c.12083G>C	p.Cys4028Ser	p.C4028S	ENST00000441802	NM_005245.3	4028	tGc/tCc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557340	187557340	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			529	106	544	0	ENST00000441802.2:c.4022T>C	p.Leu1341Pro	p.L1341P	ENST00000441802	NM_005245.3	1341	cTc/cCc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629347	187629347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			606	97	576	0	ENST00000441802.2:c.1635G>T	p.Leu545Phe	p.L545F	ENST00000441802	NM_005245.3	545	ttG/ttT																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31407035	31407035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			538	167	420	0	ENST00000344624.3:c.3872G>T	p.Gly1291Val	p.G1291V	ENST00000344624		1291	gGc/gTc																																																																															
E2F3	1871	MSKCC	GRCh37	6	20486942	20486942	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	43	268	0	ENST00000346618.3:c.907G>T	p.Asp303Tyr	p.D303Y	ENST00000346618	NM_001949.4	303	Gat/Tat																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056026	26056026	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			635	137	543	0	ENST00000343677.2:c.631A>G	p.Lys211Glu	p.K211E	ENST00000343677	NM_005319.3	211	Aag/Gag																																																																															
POT1	25913	MSKCC	GRCh37	7	124532364	124532364	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			273	83	322	0	ENST00000357628.3:c.80G>T	p.Gly27Val	p.G27V	ENST00000357628	NM_015450.2	27	gGt/gTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486045	8486045	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			504	185	638	0	ENST00000356435.5:c.2772C>A	p.Asn924Lys	p.N924K	ENST00000356435		924	aaC/aaA																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518069	8518069	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			433	150	451	0	ENST00000356435.5:c.1322C>A	p.Pro441His	p.P441H	ENST00000356435		441	cCt/cAt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53247529	53247529	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059013-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			246	104	282	0	ENST00000375401.3:c.280G>C	p.Glu94Gln	p.E94Q	ENST00000375401	NM_004187.3	94	Gaa/Caa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466578	120466578	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs893877808		P-0059685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	64	493	0	ENST00000256646.2:c.4541A>G	p.Lys1514Arg	p.K1514R	ENST00000256646	NM_024408.3	1514	aAa/aGa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508373	106508373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	95	541	0	ENST00000359195.3:c.367C>T	p.Arg123Cys	p.R123C	ENST00000359195	NM_002649.2	123	Cgc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288370	15288370	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059685-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	96	571	0	ENST00000263388.2:c.4369G>C	p.Asp1457His	p.D1457H	ENST00000263388	NM_000435.2	1457	Gac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0060950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	423	650	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0060950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	176	497	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0060950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	148	456	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119762	70119763	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0060950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	244	399	0	ENST00000245479.2:c.768dup	p.Arg257AlafsTer39	p.R257Afs*39	ENST00000245479	NM_000346.3	255	gag/gaGg																																																																															
RB1	5925	MSKCC	GRCh37	13	48919304	48919304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	24	206	0	ENST00000267163.4:c.469G>A	p.Val157Ile	p.V157I	ENST00000267163	NM_000321.2	157	Gta/Ata																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0060950-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	101	287	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0060953-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			663	196	506	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074328	8074336	+	inframe_deletion	In_Frame_Del	DEL	CTTGATCCT	CTTGATCCT	-			P-0060953-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			883	90	545	0	ENST00000377482.5:c.323_331del	p.Glu108_Gln110del	p.E108_Q110del	ENST00000377482	NM_018948.3	108	gAGGATCAAGtt/gtt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30099976	30099993	+	inframe_deletion	In_Frame_Del	DEL	GGAGCCCTTGGGAATGAC	GGAGCCCTTGGGAATGAC	-			P-0060953-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	169	518	1	ENST00000331968.5:c.1627_1644del	p.Val543_Ser548del	p.V543_S548del	ENST00000331968	NM_002742.2	543	GTCATTCCCAAGGGCTCC/-																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712668	43712668	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0060953-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			871	105	623	0	ENST00000382044.4:c.4516T>G	p.Phe1506Val	p.F1506V	ENST00000382044	NM_001141980.1	1506	Ttt/Gtt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878108	151878109	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0060953-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			814	398	647	0	ENST00000262189.6:c.6836dup	p.Gly2280TrpfsTer9	p.G2280Wfs*9	ENST00000262189	NM_170606.2	2279	cct/ccCt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239114	98239114	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060953-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			876	57	540	0	ENST00000331920.6:c.1529T>C	p.Val510Ala	p.V510A	ENST00000331920	NM_000264.3	510	gTt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0060954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	23	625	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0060954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	29	322	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971135	21971136	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0060954-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	37	701	0	ENST00000304494.5:c.221_222dup	p.Pro75ThrfsTer72	p.P75Tfs*72	ENST00000304494	NM_000077.4	74	-/AC																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0061046-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			833	62	682	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0061046-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	131	523	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374944	45374944	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0061046-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	59	566	0	ENST00000262160.6:c.899A>G	p.Asp300Gly	p.D300G	ENST00000262160	NM_005901.5	300	gAt/gGt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276860	15276861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs753725730		P-0061046-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			799	180	764	3	ENST00000263388.2:c.5404dup	p.Ala1802GlyfsTer8	p.A1802Gfs*8	ENST00000263388	NM_000435.2	1802	gct/gGct																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912149	114912149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0061046-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			628	81	559	0	ENST00000543371.1:c.1219C>T	p.Arg407Ter	p.R407*	ENST00000543371	NM_001198531.1	407	Cga/Tga																																																																															
MED12	9968	MSKCC	GRCh37	X	70338701	70338701	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0061046-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	121	478	0	ENST00000374080.3:c.97G>C	p.Glu33Gln	p.E33Q	ENST00000374080		33	Gag/Cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0061046-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	142	379	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100227	30100227	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0061046-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	58	312	0	ENST00000331968.5:c.1393G>T	p.Glu465Ter	p.E465*	ENST00000331968	NM_002742.2	465	Gaa/Taa																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2090028	2090028	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs149287105		P-0061046-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			916	118	795	0	ENST00000219066.1:c.836A>G	p.Asn279Ser	p.N279S	ENST00000219066	NM_002528.5	279	aAt/aGt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660171	227660171	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061046-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			877	177	777	0	ENST00000305123.5:c.3284G>T	p.Cys1095Phe	p.C1095F	ENST00000305123	NM_005544.2	1095	tGc/tTc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721964	176721964	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0061046-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			926	403	929	0	ENST00000439151.2:c.7595C>A	p.Ser2532Ter	p.S2532*	ENST00000439151	NM_022455.4	2532	tCa/tAa																																																																															
MED12	9968	MSKCC	GRCh37	X	70349048	70349048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0061046-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			766	179	723	0	ENST00000374080.3:c.3560C>T	p.Pro1187Leu	p.P1187L	ENST00000374080		1187	cCt/cTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0061050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			867	289	620	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs863224683		P-0061050-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1004	111	710	0	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0061051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			791	152	578	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913407		P-0061051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			735	90	543	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916924	178916924	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0061051-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			661	14	440	0	ENST00000263967.3:c.311C>A	p.Pro104Gln	p.P104Q	ENST00000263967	NM_006218.2	104	cCa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0061101-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	95	272	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0061104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	28	276	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579359	7579399	+	frameshift_variant	Frame_Shift_Del	DEL	GGAAACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGGACA	GGAAACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGGACA	-			P-0061104-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			795	42	632	0	ENST00000269305.4:c.288_328del	p.Val97SerfsTer38	p.V97Sfs*38	ENST00000269305	NM_001126112.2	96	tcTGTCCCTTCCCAGAAAACCTACCAGGGCAGCTACGGTTTCCgt/tcgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0061107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	191	489	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs137854575		P-0061107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	148	502	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587777893		P-0061107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	259	571	0	ENST00000361445.4:c.5930C>A	p.Thr1977Lys	p.T1977K	ENST00000361445	NM_004958.3	1977	aCa/aAa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375038	45375041	+	frameshift_variant	Frame_Shift_Del	DEL	AGTA	AGTA	-			P-0061107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	138	442	0	ENST00000262160.6:c.802_805del	p.Tyr268GlnfsTer9	p.Y268Qfs*9	ENST00000262160	NM_005901.5	268	TACTca/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0061107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	142	324	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175776	112175776	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0061107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	420	544	0	ENST00000257430.4:c.4485del	p.Ser1495ArgfsTer12	p.S1495Rfs*12	ENST00000257430	NM_000038.5	1495	agT/ag																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729864	41729864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061107-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			591	209	629	0	ENST00000242208.4:c.665C>T	p.Pro222Leu	p.P222L	ENST00000242208	NM_002192.2	222	cCt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0061161-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	81	421	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225591	26225591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0061161-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	148	639	0	ENST00000360408.1:c.209G>A	p.Arg70His	p.R70H	ENST00000360408	NM_003532.2	70	cGc/cAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0061229-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	397	804	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
GNB1	2782	MSKCC	GRCh37	1	1720607	1720619	+	frameshift_variant	Frame_Shift_Del	DEL	GTCATGGGAGTAA	GTCATGGGAGTAA	-			P-0061229-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	98	639	0	ENST00000378609.4:c.789_801del	p.Tyr264ThrfsTer53	p.Y264Tfs*53	ENST00000378609	NM_002074.3	263	acTTACTCCCATGAC/ac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11150206	11150206	+	intron_variant	Intron	SNP	C	C	T			P-0061229-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	105	485	0	ENST00000344626.4:c.4171-1777C>T		p.*1391*	ENST00000344626	NM_003072.3																																																																																	
PTPRD	5789	MSKCC	GRCh37	9	8465561	8465561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0061229-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	63	614	0	ENST00000356435.5:c.3619del	p.Asp1207MetfsTer24	p.D1207Mfs*24	ENST00000356435		1207	Gat/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7574030	7574030	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0061230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	30	478	0	ENST00000269305.4:c.997del	p.Arg333ValfsTer12	p.R333Vfs*12	ENST00000269305	NM_001126112.2	333	Cgt/gt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0061230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	15	416	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERG	2078	MSKCC	GRCh37	21	39775530	39775530	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769340813		P-0061230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	23	641	0	ENST00000288319.7:c.490G>A	p.Asp164Asn	p.D164N	ENST00000288319	NM_182918.3	164	Gat/Aat																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256120	16256121	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0060336-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			443	496	477	0	ENST00000375759.3:c.3385_3386del	p.Val1129Ter	p.V1129*	ENST00000375759	NM_015001.2	1129	GTt/t																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602806	10602806	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0060703-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			415	647	639	0	ENST00000171111.5:c.772G>T	p.Glu258Ter	p.E258*	ENST00000171111	NM_203500.1	258	Gaa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060703-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			379	250	469	0	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT																																																																															
STK11	6794	MSKCC	GRCh37	19	1218446	1218447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0060703-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	189	406	0	ENST00000326873.7:c.326dup	p.Asn109LysfsTer54	p.N109Kfs*54	ENST00000326873	NM_000455.4	107	-/A																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508239	106508239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060703-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			700	239	538	1	ENST00000359195.3:c.233C>A	p.Ala78Glu	p.A78E	ENST00000359195	NM_002649.2	78	gCg/gAg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99192838	99192838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs530243293		P-0060703-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			456	186	320	0	ENST00000268035.6:c.28C>T	p.Pro10Ser	p.P10S	ENST00000268035	NM_000875.3	10	Ccg/Tcg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266107	41266108	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0060703-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			365	250	463	0	ENST00000349496.5:c.104_105delinsAA	p.Ile35Lys	p.I35K	ENST00000349496	NM_001904.3	35	aTC/aAA																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21345963	21345963	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1419091884		P-0060703-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			358	237	529	0	ENST00000215739.8:c.842del	p.Pro281ArgfsTer70	p.P281Rfs*70	ENST00000215739	NM_006767.3	280	Ccc/cc																																																																															
KDR	3791	MSKCC	GRCh37	4	55976840	55976840	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060703-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	225	381	0	ENST00000263923.4:c.1072C>A	p.Pro358Thr	p.P358T	ENST00000263923	NM_002253.2	358	Cca/Aca																																																																															
RAD21	5885	MSKCC	GRCh37	8	117862942	117862942	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060703-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			223	56	242	0	ENST00000297338.2:c.1535T>C	p.Ile512Thr	p.I512T	ENST00000297338	NM_006265.2	512	aTc/aCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0060704-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			498	406	417	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0060704-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	341	579	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37865577	37865577	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060704-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			318	717	488	0	ENST00000269571.5:c.446T>G	p.Leu149Trp	p.L149W	ENST00000269571		149	tTg/tGg																																																																															
ERG	2078	MSKCC	GRCh37	21	39774477	39774477	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0060704-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			579	207	440	0	ENST00000288319.7:c.673+2T>C		p.X225_splice	ENST00000288319	NM_182918.3	225																																																																																
TGFBR2	7048	MSKCC	GRCh37	3	30713691	30713691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060704-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			632	431	664	0	ENST00000359013.4:c.1091G>T	p.Arg364Leu	p.R364L	ENST00000359013	NM_001024847.2	364	cGg/cTg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37038114	37038114	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060704-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	90	278	0	ENST00000231790.2:c.121G>C	p.Asp41His	p.D41H	ENST00000231790	NM_000249.3	41	Gat/Cat																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169999044	169999044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060704-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	350	315	0	ENST00000295797.4:c.973G>A	p.Glu325Lys	p.E325K	ENST00000295797	NM_002740.5	325	Gaa/Aaa																																																																															
KIT	3815	MSKCC	GRCh37	4	55564471	55564471	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060704-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			268	329	452	0	ENST00000288135.5:c.359T>C	p.Val120Ala	p.V120A	ENST00000288135	NM_000222.2	120	gTt/gCt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681114	117681114	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060704-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			371	112	391	0	ENST00000368508.3:c.3506T>C	p.Met1169Thr	p.M1169T	ENST00000368508	NM_002944.2	1169	aTg/aCg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455091	50455091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1422790468		P-0060748-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			727	66	417	0	ENST00000331340.3:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000331340	NM_006060.4	213	cGa/cAa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600386	10600386	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060748-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			978	98	621	0	ENST00000171111.5:c.1469A>G	p.Tyr490Cys	p.Y490C	ENST00000171111	NM_203500.1	490	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000113-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			682	371	843	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
KIT	3815	MSKCC	GRCh37	4	55594221	55594221	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs121913512		P-0000113-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			157	246	444	0	ENST00000288135.5:c.1924A>C	p.Lys642Gln	p.K642Q	ENST00000288135	NM_000222.2	642	Aaa/Caa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0000113-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			561	328	749	15	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000113-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			264	371	778	0	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																															
AR	367	MSKCC	GRCh37	X	66765127	66765127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000113-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			442	203	586	0	ENST00000374690.3:c.139G>A	p.Ala47Thr	p.A47T	ENST00000374690	NM_000044.3	47	Gca/Aca																																																																															
BCOR	54880	MSKCC	GRCh37	X	39916529	39916529	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000113-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			430	201	557	0	ENST00000378444.4:c.4474C>A	p.His1492Asn	p.H1492N	ENST00000378444	NM_001123385.1	1492	Cat/Aat																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120506389	120506389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000113-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			252	630	663	0	ENST00000256646.2:c.1723G>C	p.Asp575His	p.D575H	ENST00000256646	NM_024408.3	575	Gac/Cac																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505386	125505386	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000113-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			285	171	418	0	ENST00000428830.2:c.676A>C	p.Thr226Pro	p.T226P	ENST00000428830	NM_001114121.2	226	Aca/Cca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49418445	49418445	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000113-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			589	305	778	0	ENST00000301067.7:c.15968G>T	p.Arg5323Leu	p.R5323L	ENST00000301067	NM_003482.3	5323	cGc/cTc																																																																															
CDK4	1019	MSKCC	GRCh37	12	58144478	58144478	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000113-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			510	311	630	0	ENST00000257904.6:c.593G>A	p.Trp198Ter	p.W198*	ENST00000257904	NM_000075.3	198	tGg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579431	7579432	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000113-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			743	387	850	0	ENST00000269305.4:c.255dup	p.Ala86CysfsTer63	p.A86Cfs*63	ENST00000269305	NM_001126112.2	85	-/T																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292555	15292555	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000113-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			259	609	737	0	ENST00000263388.2:c.2624G>T	p.Cys875Phe	p.C875F	ENST00000263388	NM_000435.2	875	tGc/tTc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424878	47425304	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGGATTCAGAAGAAGATATCGAGCCATCTTACAGCCTGTTTCGAGAAGACACATCACTGCCTTCTCTGTCCAAAGACCATTCTAAGCTCTCTATGGAACTGGAGGGAAATGATGGGCTGTCTTTCATTATGAGCAATTTTGAGAGTAAACTGAACAACAAAGTACCTCCGCCAGTCAAACCAAAGCCTCCTGTCCATTTTGAAATTACAAAGGGGGATCTATCTTATTTAGACCAAGGCCATAGGGATGGACAGAGGAAGTCTGTGTCTTCTAGCCCCTGGCTGCCTCAGGATGGGTTTGATCCTTCTGACTATGCTGAACCCATGGATGCTGTGGTGAAGCCAAGGAATGAAGAAGAAAACATATACTCCGTGCCCCATGACAGCACCCAAGGCAAAATCATCACCATTCGGAATATCAACAAA	GCAGGATTCAGAAGAAGATATCGAGCCATCTTACAGCCTGTTTCGAGAAGACACATCACTGCCTTCTCTGTCCAAAGACCATTCTAAGCTCTCTATGGAACTGGAGGGAAATGATGGGCTGTCTTTCATTATGAGCAATTTTGAGAGTAAACTGAACAACAAAGTACCTCCGCCAGTCAAACCAAAGCCTCCTGTCCATTTTGAAATTACAAAGGGGGATCTATCTTATTTAGACCAAGGCCATAGGGATGGACAGAGGAAGTCTGTGTCTTCTAGCCCCTGGCTGCCTCAGGATGGGTTTGATCCTTCTGACTATGCTGAACCCATGGATGCTGTGGTGAAGCCAAGGAATGAAGAAGAAAACATATACTCCGTGCCCCATGACAGCACCCAAGGCAAAATCATCACCATTCGGAATATCAACAAA	-			P-0000113-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			624	212	714	0	ENST00000404338.3:c.2948_3374del	p.Gln983ProfsTer19	p.Q983Pfs*19	ENST00000404338	NM_004491.4	982	ctGCAGGATTCAGAAGAAGATATCGAGCCATCTTACAGCCTGTTTCGAGAAGACACATCACTGCCTTCTCTGTCCAAAGACCATTCTAAGCTCTCTATGGAACTGGAGGGAAATGATGGGCTGTCTTTCATTATGAGCAATTTTGAGAGTAAACTGAACAACAAAGTACCTCCGCCAGTCAAACCAAAGCCTCCTGTCCATTTTGAAATTACAAAGGGGGATCTATCTTATTTAGACCAAGGCCATAGGGATGGACAGAGGAAGTCTGTGTCTTCTAGCCCCTGGCTGCCTCAGGATGGGTTTGATCCTTCTGACTATGCTGAACCCATGGATGCTGTGGTGAAGCCAAGGAATGAAGAAGAAAACATATACTCCGTGCCCCATGACAGCACCCAAGGCAAAATCATCACCATTCGGAATATCAACAAA/ct																																																																															
ALK	238	MSKCC	GRCh37	2	29917866	29917866	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000113-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			468	249	620	0	ENST00000389048.3:c.802T>G	p.Phe268Val	p.F268V	ENST00000389048	NM_004304.4	268	Ttt/Gtt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225379425	225379425	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000113-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			216	108	428	0	ENST00000264414.4:c.443G>C	p.Arg148Pro	p.R148P	ENST00000264414	NM_003590.4	148	cGa/cCa																																																																															
REST	5978	MSKCC	GRCh37	4	57796243	57796243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000113-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			390	22	529	0	ENST00000309042.7:c.1219C>T	p.His407Tyr	p.H407Y	ENST00000309042	NM_005612.4	407	Cac/Tac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467599	66467599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000113-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			213	242	553	0	ENST00000273854.3:c.670G>T	p.Val224Phe	p.V224F	ENST00000273854	NM_004439.5	224	Gtt/Ttt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628865	187628865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000113-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			209	296	635	0	ENST00000441802.2:c.2117C>T	p.Ser706Phe	p.S706F	ENST00000441802	NM_005245.3	706	tCt/tTt																																																																															
FANCC	2176	MSKCC	GRCh37	9	97869347	97869347	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0000113-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			554	280	598	0	ENST00000289081.3:c.1533+1G>T		p.X511_splice	ENST00000289081	NM_000136.2	511																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139404193	139404193	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000113-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			597	334	724	0	ENST00000277541.6:c.2961C>A	p.Cys987Ter	p.C987*	ENST00000277541	NM_017617.3	987	tgC/tgA																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139418174	139418174	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000113-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			575	324	637	0	ENST00000277541.6:c.398G>A	p.Trp133Ter	p.W133*	ENST00000277541	NM_017617.3	133	tGg/tAg																																																																															
AR	367	MSKCC	GRCh37	X	66766351	66766351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000113-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			443	108	468	0	ENST00000374690.3:c.1363G>A	p.Gly455Ser	p.G455S	ENST00000374690	NM_000044.3	455	Ggt/Agt																																																																															
MED12	9968	MSKCC	GRCh37	X	70345895	70345895	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000113-T04-IM7									Unknown	SOMATIC				MSK-IMPACT			448	192	506	0	ENST00000374080.3:c.2432A>G	p.Asp811Gly	p.D811G	ENST00000374080		811	gAt/gGt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0049278-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	194	619	0	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049278-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	225	589	0	ENST00000269305.4:c.398T>A	p.Met133Lys	p.M133K	ENST00000269305	NM_001126112.2	133	aTg/aAg																																																																															
FH	2271	MSKCC	GRCh37	1	241680598	241680598	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778678782		P-0049278-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	99	360	0	ENST00000366560.3:c.151C>T	p.Arg51Trp	p.R51W	ENST00000366560	NM_000143.3	51	Cgg/Tgg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624274	89624274	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0049278-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	165	294	0	ENST00000371953.3:c.48T>G	p.Tyr16Ter	p.Y16*	ENST00000371953	NM_000314.4	16	taT/taG																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913315		P-0059662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	191	621	1	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916932	178916932	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	149	456	0	ENST00000263967.3:c.319A>T	p.Asn107Tyr	p.N107Y	ENST00000263967	NM_006218.2	107	Aac/Tac																																																																															
USP8	9101	MSKCC	GRCh37	15	50741616	50741616	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	46	291	0	ENST00000433963.1:c.269T>C	p.Leu90Pro	p.L90P	ENST00000433963	NM_001128611.1	90	cTt/cCt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817781	3817781	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	93	468	0	ENST00000262367.5:c.3190G>C	p.Glu1064Gln	p.E1064Q	ENST00000262367	NM_004380.2	1064	Gag/Cag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554109	63554109	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	118	596	0	ENST00000307078.5:c.630G>C	p.Met210Ile	p.M210I	ENST00000307078	NM_004655.3	210	atG/atC																																																																															
CARM1	10498	MSKCC	GRCh37	19	11024589	11024589	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201607510		P-0059662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	236	534	0	ENST00000327064.4:c.706G>A	p.Val236Met	p.V236M	ENST00000327064	NM_199141.1	236	Gtg/Atg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945147	38945147	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	62	399	0	ENST00000357387.3:c.4657G>C	p.Asp1553His	p.D1553H	ENST00000357387	NM_152756.3	1553	Gat/Cat																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67569293	67569293	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	76	454	0	ENST00000274335.5:c.410A>G	p.Glu137Gly	p.E137G	ENST00000274335		137	gAa/gGa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6045629	6045629	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	24	136	0	ENST00000265849.7:c.57T>A	p.Asp19Glu	p.D19E	ENST00000265849	NM_000535.5	19	gaT/gaA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0060860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	51	222	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
CDH1	999	MSKCC	GRCh37	16	68856113	68856113	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782750		P-0060860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	158	484	0	ENST00000261769.5:c.1921C>T	p.Gln641Ter	p.Q641*	ENST00000261769	NM_004360.3	641	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089676	27089676	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0060860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	429	733	0	ENST00000324856.7:c.2632C>T	p.Gln878Ter	p.Q878*	ENST00000324856	NM_006015.4	878	Cag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81334776	81334776	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1267493094		P-0060860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	129	424	0	ENST00000222390.5:c.1940G>A	p.Arg647Gln	p.R647Q	ENST00000222390	NM_000601.4	647	cGa/cAa																																																																															
ATRX	546	MSKCC	GRCh37	X	76938337	76938337	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	99	374	0	ENST00000373344.5:c.2411C>A	p.Ser804Tyr	p.S804Y	ENST00000373344	NM_000489.3	804	tCt/tAt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731036	162731036	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			911	182	541	0	ENST00000367921.3:c.891G>C	p.Lys297Asn	p.K297N	ENST00000367921	NM_006182.2	297	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7572938	7572938	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	174	526	0	ENST00000269305.4:c.1171G>C	p.Asp391His	p.D391H	ENST00000269305	NM_001126112.2	391	Gac/Cac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075305	16075305	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	118	338	0	ENST00000268712.3:c.247C>G	p.Gln83Glu	p.Q83E	ENST00000268712	NM_006311.3	83	Caa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178941917	178941917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	122	355	0	ENST00000263967.3:c.2236G>A	p.Asp746Asn	p.D746N	ENST00000263967	NM_006218.2	746	Gat/Aat																																																																															
PRDM1	639	MSKCC	GRCh37	6	106543568	106543568	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	118	368	0	ENST00000369096.4:c.370G>C	p.Asp124His	p.D124H	ENST00000369096	NM_001198.3	124	Gac/Cac																																																																															
LYN	4067	MSKCC	GRCh37	8	56863308	56863308	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060860-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	32	327	0	ENST00000519728.1:c.452G>C	p.Gly151Ala	p.G151A	ENST00000519728	NM_002350.3	151	gGa/gCa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0060864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	105	567	0	ENST00000346208.3:c.1003dup	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849054	156849054	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786205449		P-0060864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			970	219	763	1	ENST00000524377.1:c.1946G>A	p.Arg649Gln	p.R649Q	ENST00000524377	NM_002529.3	649	cGg/cAg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972324	32972324	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060864-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	70	317	0	ENST00000380152.3:c.9674A>G	p.Tyr3225Cys	p.Y3225C	ENST00000380152		3225	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0060881-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			773	50	454	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685281	89685281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs1060500116		P-0060881-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	26	246	0	ENST00000371953.3:c.176C>G	p.Ser59Ter	p.S59*	ENST00000371953	NM_000314.4	59	tCa/tGa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220604	1220604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060881-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			891	57	662	0	ENST00000326873.7:c.622G>A	p.Asp208Asn	p.D208N	ENST00000326873	NM_000455.4	208	Gac/Aac																																																																															
CTR9	9646	MSKCC	GRCh37	11	10800327	10800327	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060881-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			861	68	621	0	ENST00000361367.2:c.3197C>G	p.Ser1066Cys	p.S1066C	ENST00000361367	NM_014633.3	1066	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0060882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	224	780	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																															
MGA	23269	MSKCC	GRCh37	15	42021440	42021440	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0060882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	96	644	0	ENST00000219905.7:c.3736C>T	p.Arg1246Ter	p.R1246*	ENST00000219905	NM_001164273.1	1246	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0060882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	217	406	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911494	114911495	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0060882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	86	538	0	ENST00000543371.1:c.1012_1013insT	p.Asp338ValfsTer18	p.D338Vfs*18	ENST00000543371	NM_001198531.1	338	gac/gTac																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625410	69625410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	106	699	0	ENST00000334134.2:c.383C>T	p.Thr128Met	p.T128M	ENST00000334134	NM_005247.2	128	aCg/aTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640625	3640625	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			927	114	824	0	ENST00000294008.3:c.3014A>G	p.Glu1005Gly	p.E1005G	ENST00000294008	NM_032444.2	1005	gAg/gGg																																																																															
APC	324	MSKCC	GRCh37	5	112175530	112175534	+	frameshift_variant	Frame_Shift_Del	DEL	GGTAA	GGTAA	-			P-0060882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	214	662	0	ENST00000257430.4:c.4240_4244del	p.Val1414TrpfsTer7	p.V1414Wfs*7	ENST00000257430	NM_000038.5	1413	atGGTAAgt/atgt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176631255	176631255	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0060882-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	67	612	0	ENST00000439151.2:c.1198A>T	p.Arg400Ter	p.R400*	ENST00000439151	NM_022455.4	400	Aga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579584	7579585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0060926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	164	639	0	ENST00000269305.4:c.102dup	p.Pro36AlafsTer7	p.P36Afs*7	ENST00000269305	NM_001126112.2	34	-/C																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653790	89653790	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	22	168	0	ENST00000371953.3:c.88C>A	p.Pro30Thr	p.P30T	ENST00000371953	NM_000314.4	30	Cca/Aca																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434645	110434645	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060926-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	181	765	0	ENST00000375856.3:c.3756C>G	p.Asn1252Lys	p.N1252K	ENST00000375856	NM_003749.2	1252	aaC/aaG																																																																															
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs137854575		P-0060930-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	94	280	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200113	128200113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906629		P-0060930-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	195	685	0	ENST00000341105.2:c.1192C>T	p.Arg398Trp	p.R398W	ENST00000341105	NM_032638.4	398	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175577	112175577	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0060930-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	328	447	0	ENST00000257430.4:c.4288del	p.Thr1430ProfsTer43	p.T1430Pfs*43	ENST00000257430	NM_000038.5	1429	cAa/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0060930-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	337	674	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435948	110435948	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060930-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1259	74	767	0	ENST00000375856.3:c.2453G>T	p.Gly818Val	p.G818V	ENST00000375856	NM_003749.2	818	gGg/gTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0060934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	117	275	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0060934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			752	345	675	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108163398	108163400	+	inframe_deletion	In_Frame_Del	DEL	TTA	TTA	-			P-0060934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	98	483	0	ENST00000278616.4:c.4492_4494del	p.Leu1498del	p.L1498del	ENST00000278616	NM_000051.3	1497	TTA/-																																																																															
APC	324	MSKCC	GRCh37	5	112174286	112174286	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0060934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			839	198	545	1	ENST00000257430.4:c.2995C>T	p.Gln999Ter	p.Q999*	ENST00000257430	NM_000038.5	999	Caa/Taa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808636	1808636	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762888506		P-0060934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1040	226	910	0	ENST00000260795.2:c.2249G>A	p.Arg750His	p.R750H	ENST00000260795		750	cGt/cAt																																																																															
ATM	472	MSKCC	GRCh37	11	108142105	108142105	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs730881388		P-0060934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	140	482	0	ENST00000278616.4:c.3049C>T	p.Gln1017Ter	p.Q1017*	ENST00000278616	NM_000051.3	1017	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0060934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	237	355	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88659648	88659648	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0060934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	165	457	0	ENST00000372037.3:c.430+1G>A		p.X144_splice	ENST00000372037	NM_004329.2	144																																																																																
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0060938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1019	169	705	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0060938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	38	337	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845534	151845534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060938-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			921	90	610	0	ENST00000262189.6:c.13478G>A	p.Cys4493Tyr	p.C4493Y	ENST00000262189	NM_170606.2	4493	tGc/tAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0060940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			303	149	370	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934571		P-0060940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			246	353	417	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30132955	30132955	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145651161		P-0060940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			233	249	417	0	ENST00000331968.5:c.646C>T	p.Arg216Cys	p.R216C	ENST00000331968	NM_002742.2	216	Cgc/Tgc																																																																															
HIST2H3D	653604	MSKCC	GRCh37	1	149784840	149784840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			600	36	396	0	ENST00000331491.1:c.397G>A	p.Gly133Arg	p.G133R	ENST00000331491	NM_001123375.2	133	Ggg/Agg																																																																															
YAP1	10413	MSKCC	GRCh37	11	101984951	101984951	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0060940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			247	29	218	0	ENST00000282441.5:c.398A>C	p.Gln133Pro	p.Q133P	ENST00000282441	NM_001130145.2	133	cAg/cCg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144666	55144666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060940-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			516	71	382	0	ENST00000257290.5:c.2140G>A	p.Asp714Asn	p.D714N	ENST00000257290	NM_006206.4	714	Gat/Aat																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013379-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			334	140	460	0	ENST00000397062.3:c.101G>C	p.Arg34Pro	p.R34P	ENST00000397062	NM_006164.4	34	cGa/cCa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508334	106508334	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013379-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			528	178	649	2	ENST00000359195.3:c.328T>A	p.Tyr110Asn	p.Y110N	ENST00000359195	NM_002649.2	110	Tac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0013379-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	361	727	1	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971053	21971053	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs137854598		P-0013379-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			249	329	688	0	ENST00000304494.5:c.305C>A	p.Ala102Glu	p.A102E	ENST00000304494	NM_000077.4	102	gCg/gAg																																																																															
KDR	3791	MSKCC	GRCh37	4	55946245	55946245	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1243160272		P-0013379-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			525	288	626	0	ENST00000263923.4:c.3934G>A	p.Asp1312Asn	p.D1312N	ENST00000263923	NM_002253.2	1312	Gat/Aat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499771	8499771	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs748340591		P-0013379-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	245	568	0	ENST00000356435.5:c.2198G>T	p.Arg733Leu	p.R733L	ENST00000356435		733	cGc/cTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133245189	133245701	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCGAGTGCCCACCCAGGCGGCCGACACTCACTGAACTCGCCCCTCCACTGCCAGGCCATCTTCCGCTGGCAGTTTGCTCCAGGCTTATTGAAGTCACAGGCAGCACAGGTGGCTTCGTCCACCATGGCAGAGGGCTGGGAGGGGTGAGAAAGCACTTAGGGCTGGGCAGAGAGAGCTCCGACTCTGACACGGGAAGTAAAGTCTCACCTGCAGGCGGTTGGTCAGGATGATGTTGGGGTACATGGCCCCCACGTCCAGGTGGTAGATGAGTGGACACTCGATGCGGCTGGGAACGTCCTTCAGGGAGGCAAGCTTGCTCTTAATCTCATCACACACCTGCAGAGAAAGCGAAACTCAGTAGAGGCTGGTGACCAAGCTTGCCTCGTGTGCAGTTCACCAACCCCTTTTAGACATTCAGGAGAGGAAAAAGCTGAAAAATATATAAATAGAGCAAAAACTAGCCAGAAGAAAAAAGTTAAGAAGGGTTGCCATCATTTCTATGAAATACATTA	ACCGAGTGCCCACCCAGGCGGCCGACACTCACTGAACTCGCCCCTCCACTGCCAGGCCATCTTCCGCTGGCAGTTTGCTCCAGGCTTATTGAAGTCACAGGCAGCACAGGTGGCTTCGTCCACCATGGCAGAGGGCTGGGAGGGGTGAGAAAGCACTTAGGGCTGGGCAGAGAGAGCTCCGACTCTGACACGGGAAGTAAAGTCTCACCTGCAGGCGGTTGGTCAGGATGATGTTGGGGTACATGGCCCCCACGTCCAGGTGGTAGATGAGTGGACACTCGATGCGGCTGGGAACGTCCTTCAGGGAGGCAAGCTTGCTCTTAATCTCATCACACACCTGCAGAGAAAGCGAAACTCAGTAGAGGCTGGTGACCAAGCTTGCCTCGTGTGCAGTTCACCAACCCCTTTTAGACATTCAGGAGAGGAAAAAGCTGAAAAATATATAAATAGAGCAAAAACTAGCCAGAAGAAAAAAGTTAAGAAGGGTTGCCATCATTTCTATGAAATACATTA	-			P-0013379-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			690	70	696	0	ENST00000320574.5:c.1795-176_2026+32del		p.X599_splice	ENST00000320574	NM_006231.2	599																																																																																
CYSLTR2	57105	MSKCC	GRCh37	13	49281297	49281297	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013379-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			202	223	578	0	ENST00000282018.3:c.344C>G	p.Ser115Cys	p.S115C	ENST00000282018	NM_020377.2	115	tCt/tGt																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51529147	51529147	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013379-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			256	251	515	0	ENST00000396402.1:c.205G>C	p.Gly69Arg	p.G69R	ENST00000396402	NM_000103.3	69	Ggg/Cgg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299084	15299084	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013379-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	278	512	0	ENST00000263388.2:c.1454del	p.Lys485ArgfsTer114	p.K485Rfs*114	ENST00000263388	NM_000435.2	485	aAg/ag																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793280	33793280	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013379-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			365	542	466	0	ENST00000498907.2:c.41C>G	p.Pro14Arg	p.P14R	ENST00000498907	NM_004364.3	14	cCg/cGg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117687409	117687409	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013379-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			162	187	475	0	ENST00000368508.3:c.2642C>A	p.Ser881Tyr	p.S881Y	ENST00000368508	NM_002944.2	881	tCt/tAt																																																																															
BTK	695	MSKCC	GRCh37	X	100615719	100615719	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013379-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			115	282	330	0	ENST00000308731.7:c.613G>C	p.Glu205Gln	p.E205Q	ENST00000308731	NM_000061.2	205	Gag/Cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038202-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			423	87	380	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515240	103515240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038202-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			970	62	707	0	ENST00000355739.4:c.1741G>T	p.Val581Phe	p.V581F	ENST00000355739	NM_000123.3	581	Gtc/Ttc																																																																															
MAX	4149	MSKCC	GRCh37	14	65544729	65544733	+	frameshift_variant	Frame_Shift_Del	DEL	TTGTC	TTGTC	-			P-0038202-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			825	130	700	0	ENST00000358664.4:c.193_197del	p.Asp65SerfsTer20	p.D65Sfs*20	ENST00000358664	NM_002382.4	65	GACAAa/a																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082754	16082754	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs776717109		P-0038202-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			854	49	584	0	ENST00000281043.3:c.568G>T	p.Ala190Ser	p.A190S	ENST00000281043	NM_005378.4	190	Gcc/Tcc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31369221	31369221	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0038202-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			908	147	649	0	ENST00000328111.2:c.204+1G>T		p.X68_splice	ENST00000328111	NM_006892.3	68																																																																																
ARAF	369	MSKCC	GRCh37	X	47424711	47424711	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038202-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			1147	167	783	0	ENST00000377045.4:c.519C>A	p.Asn173Lys	p.N173K	ENST00000377045	NM_001654.4	173	aaC/aaA																																																																															
NADK	65220	MSKCC	GRCh37	1	1687987	1687987	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042733-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			591	38	764	0	ENST00000344463.4:c.889G>T	p.Glu297Ter	p.E297*	ENST00000344463		297	Gaa/Taa																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88677059	88677059	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042733-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			158	166	325	0	ENST00000372037.3:c.844del	p.Leu282Ter	p.L282*	ENST00000372037	NM_004329.2	282	Cta/ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0042733-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			98	399	539	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505626	186505626	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042733-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			405	291	450	0	ENST00000323963.5:c.1034T>C	p.Val345Ala	p.V345A	ENST00000323963		345	gTt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042733-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			427	133	587	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0042733-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			346	401	417	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578474	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057884-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			667	195	611	0	ENST00000269305.4:c.456del	p.Gly154AlafsTer16	p.G154Afs*16	ENST00000269305	NM_001126112.2	152	ccG/cc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741664	17741664	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057884-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			575	136	508	0	ENST00000250003.3:c.335A>G	p.Lys112Arg	p.K112R	ENST00000250003	NM_002478.4	112	aAg/aGg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102201933	102201934	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0057884-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			536	47	389	0	ENST00000263464.3:c.1287dup	p.Glu430ArgfsTer8	p.E430Rfs*8	ENST00000263464	NM_001165.4	429	gaa/gAaa																																																																															
AXL	558	MSKCC	GRCh37	19	41762393	41762393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057884-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			619	112	465	0	ENST00000301178.4:c.2073C>A	p.Phe691Leu	p.F691L	ENST00000301178	NM_021913.4	691	ttC/ttA																																																																															
CUL3	8452	MSKCC	GRCh37	2	225368530	225368530	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057884-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			423	34	303	0	ENST00000264414.4:c.1216C>T	p.Gln406Ter	p.Q406*	ENST00000264414	NM_003590.4	406	Caa/Taa																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175769	24175769	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057884-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			744	40	558	0	ENST00000263121.7:c.997C>G	p.Leu333Val	p.L333V	ENST00000263121	NM_003073.3	333	Ctg/Gtg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89462416	89462416	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0057884-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			406	53	352	0	ENST00000336596.2:c.1888G>T	p.Gly630Cys	p.G630C	ENST00000336596	NM_005233.5	630	Ggt/Tgt																																																																															
KIT	3815	MSKCC	GRCh37	4	55569894	55569894	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057884-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			306	38	242	0	ENST00000288135.5:c.761A>T	p.Lys254Ile	p.K254I	ENST00000288135	NM_000222.2	254	aAa/aTa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201815	66201815	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057884-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			548	65	363	0	ENST00000273854.3:c.2687G>C	p.Arg896Pro	p.R896P	ENST00000273854	NM_004439.5	896	cGt/cCt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38949971	38949971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057884-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			751	93	429	0	ENST00000357387.3:c.3979G>A	p.Ala1327Thr	p.A1327T	ENST00000357387	NM_152756.3	1327	Gct/Act																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341147	8341147	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057884-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			515	50	392	0	ENST00000356435.5:c.5069C>A	p.Pro1690His	p.P1690H	ENST00000356435		1690	cCt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			549	641	645	1	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			462	188	550	2	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955165	17955165	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752820429		P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			498	318	517	0	ENST00000458235.1:c.62C>T	p.Thr21Met	p.T21M	ENST00000458235	NM_000215.3	21	aCg/aTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			694	250	620	6	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129329	152129329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			583	272	544	4	ENST00000206249.3:c.287del	p.Gly96ValfsTer13	p.G96Vfs*13	ENST00000206249	NM_000125.3	94	ctG/ct																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			700	336	600	2	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			498	273	440	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44894229	44894232	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	AAGT	AAGT	-			P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			46	50	146	0	ENST00000377967.4:c.619+4_619+7del		p.X207_splice	ENST00000377967	NM_021140.2	207																																																																																
STAT5B	6777	MSKCC	GRCh37	17	40370236	40370236	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764965457		P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			350	402	535	4	ENST00000293328.3:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000293328	NM_012448.3	368	Cag/ag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255472	16255472	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			433	205	492	0	ENST00000375759.3:c.2737C>A	p.Leu913Met	p.L913M	ENST00000375759	NM_015001.2	913	Ctg/Atg																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182709	38182709	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370623345		P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			765	317	512	0	ENST00000396334.3:c.862G>A	p.Asp288Asn	p.D288N	ENST00000396334	NM_002468.4	288	Gac/Aac																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			302	124	493	7	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266898	41266898	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1172941347		P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	413	491	0	ENST00000349496.5:c.569G>A	p.Arg190His	p.R190H	ENST00000349496	NM_001904.3	190	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912664		P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			651	205	459	1	ENST00000269305.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000269305	NM_001126112.2	337	cGc/cAc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729394	41729394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			527	284	513	0	ENST00000242208.4:c.1135C>T	p.Arg379Trp	p.R379W	ENST00000242208	NM_002192.2	379	Cgg/Tgg																																																																															
CIC	23152	MSKCC	GRCh37	19	42797778	42797778	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778127638		P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			613	345	606	1	ENST00000575354.2:c.3830G>A	p.Arg1277His	p.R1277H	ENST00000575354	NM_015125.3	1277	cGc/cAc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372071	55372071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			567	318	587	0	ENST00000297316.4:c.761C>T	p.Ala254Val	p.A254V	ENST00000297316	NM_022454.3	254	gCg/gTg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432117	121432118	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs751449138		P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			694	501	563	10	ENST00000257555.6:c.872dup	p.Gly292ArgfsTer25	p.G292Rfs*25	ENST00000257555		288	-/C																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448601	89448601	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775665893		P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			483	427	474	3	ENST00000336596.2:c.1565G>A	p.Arg522His	p.R522H	ENST00000336596	NM_005233.5	522	cGc/cAc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413710	138413710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			504	448	407	0	ENST00000289153.2:c.1810del	p.Arg604GlyfsTer4	p.R604Gfs*4	ENST00000289153	NM_006219.2	604	Cgg/gg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			307	733	666	1	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349640	89349641	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs772267579		P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			350	125	455	5	ENST00000301030.4:c.3309dup	p.Asp1104ArgfsTer2	p.D1104Rfs*2	ENST00000301030	NM_001256183.1	1103	-/A																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733512	85733513	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs387906350		P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	134	517	0	ENST00000370580.1:c.499dup	p.Ser167PhefsTer3	p.S167Ffs*3	ENST00000370580	NM_003921.4	167	tct/tTct																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405141	139405141	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1448345366		P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			585	329	599	0	ENST00000277541.6:c.2704C>T	p.Arg902Cys	p.R902C	ENST00000277541	NM_017617.3	902	Cgc/Tgc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337683	73337684	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			208	80	380	0	ENST00000377767.4:c.2032dup	p.Ile678AsnfsTer3	p.I678Nfs*3	ENST00000377767	NM_014953.3	678	att/aAtt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			169	172	405	16	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095826	178095826	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1434375367		P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			339	110	524	0	ENST00000397062.3:c.1505G>A	p.Arg502His	p.R502H	ENST00000397062	NM_006164.4	502	cGt/cAt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749148	43749148	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758857922		P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			283	108	468	0	ENST00000382044.4:c.1658C>T	p.Thr553Met	p.T553M	ENST00000382044	NM_001141980.1	553	aCg/aTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11300386	11300386	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767105252		P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			439	252	460	2	ENST00000361445.4:c.1760G>A	p.Arg587Gln	p.R587Q	ENST00000361445	NM_004958.3	587	cGa/cAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218098	36218098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			407	222	410	0	ENST00000222270.7:c.4045G>A	p.Asp1349Asn	p.D1349N	ENST00000222270	NM_014727.1	1349	Gac/Aac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448479	49448479	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs941339684		P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			899	299	541	0	ENST00000301067.7:c.232G>A	p.Gly78Arg	p.G78R	ENST00000301067	NM_003482.3	78	Ggg/Agg																																																																															
POLE	5426	MSKCC	GRCh37	12	133218359	133218359	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			753	255	463	0	ENST00000320574.5:c.5252C>G	p.Ala1751Gly	p.A1751G	ENST00000320574	NM_006231.2	1751	gCc/gGc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026605	48026605	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779212		P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	39	482	0	ENST00000234420.5:c.1483C>T	p.Arg495Ter	p.R495*	ENST00000234420	NM_000179.2	495	Cga/Tga																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966987	25966987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			514	313	559	2	ENST00000435504.4:c.2219C>T	p.Thr740Met	p.T740M	ENST00000435504		740	aCg/aTg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807357	1807357	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			639	362	639	0	ENST00000260795.2:c.1610del	p.Asn537ThrfsTer89	p.N537Tfs*89	ENST00000260795		536	Aaa/aa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44870236	44870236	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768230343		P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			34	74	124	0	ENST00000377967.4:c.415G>A	p.Val139Ile	p.V139I	ENST00000377967	NM_021140.2	139	Gtc/Atc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9776550	9776550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			493	278	485	0	ENST00000377346.4:c.653C>T	p.Ala218Val	p.A218V	ENST00000377346	NM_005026.3	218	gCc/gTc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200823	67200823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			566	265	618	2	ENST00000312629.5:c.811G>A	p.Ala271Thr	p.A271T	ENST00000312629	NM_003952.2	271	Gca/Aca																																																																															
MALT1	10892	MSKCC	GRCh37	18	56402534	56402534	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			179	53	276	0	ENST00000348428.3:c.1576A>G	p.Thr526Ala	p.T526A	ENST00000348428	NM_006785.3	526	Act/Gct																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10271075	10271075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			264	122	348	0	ENST00000340748.4:c.980C>T	p.Thr327Met	p.T327M	ENST00000340748		327	aCg/aTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42791375	42791375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			658	342	673	0	ENST00000575354.2:c.435G>T	p.Glu145Asp	p.E145D	ENST00000575354	NM_015125.3	145	gaG/gaT																																																																															
CIC	23152	MSKCC	GRCh37	19	42797366	42797366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			680	362	583	0	ENST00000575354.2:c.3728C>T	p.Ala1243Val	p.A1243V	ENST00000575354	NM_015125.3	1243	gCc/gTc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169988314	169988314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			291	178	356	0	ENST00000295797.4:c.556G>A	p.Val186Ile	p.V186I	ENST00000295797	NM_002740.5	186	Gtc/Atc																																																																															
SMO	6608	MSKCC	GRCh37	7	128845180	128845180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			823	83	538	0	ENST00000249373.3:c.674C>T	p.Ala225Val	p.A225V	ENST00000249373	NM_005631.4	225	gCt/gTt																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194647	29194647	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			226	273	560	1	ENST00000240100.2:c.1081A>G	p.Thr361Ala	p.T361A	ENST00000240100	NM_001394.6	361	Acc/Gcc																																																																															
MYC	4609	MSKCC	GRCh37	8	128752732	128752734	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-			P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			504	278	503	0	ENST00000377970.2:c.896_898del	p.Ala299del	p.A299del	ENST00000377970	NM_002467.4	298	tCTGct/tct																																																																															
TEK	7010	MSKCC	GRCh37	9	27206613	27206613	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058939-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			296	131	393	0	ENST00000380036.4:c.2398A>G	p.Thr800Ala	p.T800A	ENST00000380036	NM_000459.3	800	Act/Gct																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528073	157528073	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	75	473	0	ENST00000346085.5:c.5798C>G	p.Thr1933Ser	p.T1933S	ENST00000346085	NM_020732.3	1933	aCc/aGc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929583	44929583	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058980-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	49	154	0	ENST00000377967.4:c.2683del	p.Glu895LysfsTer3	p.E895Kfs*3	ENST00000377967	NM_021140.2	895	Gaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0059470-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			603	56	610	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059470-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			419	32	377	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64574693	64574693	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0059471-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			227	521	499	0	ENST00000337652.1:c.799-2A>C		p.X267_splice	ENST00000337652	NM_130803.2	267																																																																																
SERPINB3	6317	MSKCC	GRCh37	18	61324582	61324582	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059471-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			220	186	429	0	ENST00000283752.5:c.534C>G	p.Asn178Lys	p.N178K	ENST00000283752	NM_006919.2	178	aaC/aaG																																																																															
ATRX	546	MSKCC	GRCh37	X	76909587	76909587	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0059471-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			13	42	136	0	ENST00000373344.5:c.4317+1G>T		p.X1439_splice	ENST00000373344	NM_000489.3	1439																																																																																
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060476-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			488	376	1000	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717778	89717778	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0060476-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			130	39	322	0	ENST00000371953.3:c.801+2T>G		p.X267_splice	ENST00000371953	NM_000314.4	267																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519895		P-0060476-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			229	202	567	0	ENST00000281708.4:c.1394G>T	p.Arg465Leu	p.R465L	ENST00000281708	NM_033632.3	465	cGt/cTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445178	49445178	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771291128		P-0060476-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1016	388	1226	0	ENST00000301067.7:c.2288C>T	p.Pro763Leu	p.P763L	ENST00000301067	NM_003482.3	763	cCg/cTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602645	10602645	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060476-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			557	392	983	0	ENST00000171111.5:c.933C>G	p.His311Gln	p.H311Q	ENST00000171111	NM_203500.1	311	caC/caG																																																																															
RB1	5925	MSKCC	GRCh37	13	48954346	48954346	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0060476-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			150	41	371	0	ENST00000267163.4:c.1467C>A	p.Cys489Ter	p.C489*	ENST00000267163	NM_000321.2	489	tgC/tgA																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731157	162731157	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060476-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			795	327	984	0	ENST00000367921.3:c.1012C>G	p.Leu338Val	p.L338V	ENST00000367921	NM_006182.2	338	Ctc/Gtc																																																																															
RAB35	11021	MSKCC	GRCh37	12	120541638	120541638	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060476-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1107	292	939	0	ENST00000229340.5:c.219C>G	p.Ile73Met	p.I73M	ENST00000229340	NM_006861.6	73	atC/atG																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993666	72993666	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0060476-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			919	451	1081	0	ENST00000268489.5:c.379G>T	p.Glu127Ter	p.E127*	ENST00000268489	NM_006885.3	127	Gag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29528167	29528167	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0060476-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			281	108	532	0	ENST00000358273.4:c.1175A>C	p.Gln392Pro	p.Q392P	ENST00000358273	NM_001042492.2	392	cAa/cCa																																																																															
CD79A	973	MSKCC	GRCh37	19	42383088	42383088	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060476-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			405	178	516	0	ENST00000221972.3:c.108C>A	p.His36Gln	p.H36Q	ENST00000221972	NM_021601.3	36	caC/caA																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402493	20402493	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060476-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			725	225	760	0	ENST00000346618.3:c.30G>T	p.Glu10Asp	p.E10D	ENST00000346618	NM_001949.4	10	gaG/gaT																																																																															
CDC73	79577	MSKCC	GRCh37	1	193181224	193181224	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0060676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	39	284	1	ENST00000367435.3:c.1060A>T	p.Lys354Ter	p.K354*	ENST00000367435	NM_024529.4	354	Aag/Tag																																																																															
TET1	80312	MSKCC	GRCh37	10	70333591	70333591	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	124	492	0	ENST00000373644.4:c.1496A>G	p.Asn499Ser	p.N499S	ENST00000373644	NM_030625.2	499	aAt/aGt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56400719	56400719	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060676-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	36	370	0	ENST00000348428.3:c.1313A>G	p.Asn438Ser	p.N438S	ENST00000348428	NM_006785.3	438	aAt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0060678-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	93	646	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0060678-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	45	436	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0060678-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	50	649	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0060678-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	25	533	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241924	72241924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs552625764		P-0060678-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	38	521	0	ENST00000357731.5:c.466G>A	p.Val156Ile	p.V156I	ENST00000357731	NM_173808.2	156	Gtc/Atc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0060678-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	44	332	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576845	7576871	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTAGTACCTGAAGGGTGAAATATTCT	CTTAGTACCTGAAGGGTGAAATATTCT	-			P-0060678-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	38	597	0	ENST00000269305.4:c.975_993+8del		p.X325_splice	ENST00000269305	NM_001126112.2	325																																																																																
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0060683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	106	385	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C	rs886039483		P-0060683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	210	484	0	ENST00000269305.4:c.376T>G	p.Tyr126Asp	p.Y126D	ENST00000269305	NM_001126112.2	126	Tac/Gac																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733231	74733360	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	GCCGTAGCTCATAGCTCTGAGTGGCGGCCCGGAGCCCCGCGAACTGGCGCCGGCTTCCTCAGCTCTGGGCGGTGCGACGCCGCGCCTCTCAGGCAGTTGCCTTCCGCGTGGGGACACTGGGAAAGGCCTT	GCCGTAGCTCATAGCTCTGAGTGGCGGCCCGGAGCCCCGCGAACTGGCGCCGGCTTCCTCAGCTCTGGGCGGTGCGACGCCGCGCCTCTCAGGCAGTTGCCTTCCGCGTGGGGACACTGGGAAAGGCCTT	-			P-0060684-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	55	551	0	ENST00000359995.5:c.-118_12del		p.*40*	ENST00000359995	NM_001195427.1																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577157	7577157	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0060686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			47	17	443	0	ENST00000269305.4:c.783-2A>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
CARD11	84433	MSKCC	GRCh37	7	2963922	2963922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			75	20	610	0	ENST00000396946.4:c.1885G>A	p.Asp629Asn	p.D629N	ENST00000396946	NM_032415.4	629	Gat/Aat																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222490	2222490	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs995952663		P-0060686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			63	35	494	0	ENST00000398665.3:c.3322C>T	p.Arg1108Ter	p.R1108*	ENST00000398665	NM_032482.2	1108	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0060686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			30	10	316	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898396	63898396	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1447735583		P-0060686-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			31	10	468	0	ENST00000398590.3:c.122C>A	p.Pro41Gln	p.P41Q	ENST00000398590	NM_001177387.1	41	cCg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0060699-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	379	665	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426690	212426690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060699-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			719	146	655	0	ENST00000342788.4:c.2425C>T	p.His809Tyr	p.H809Y	ENST00000342788	NM_005235.2	809	Cac/Tac																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67593271	67593349	+	frameshift_variant	Frame_Shift_Del	DEL	AACAAAACAGCAACTGGCTATGGCTTTGCCGAGCCCTATAACTTGTACAGCTCTCTGAAAGAACTGGTGCTACATTACC	AACAAAACAGCAACTGGCTATGGCTTTGCCGAGCCCTATAACTTGTACAGCTCTCTGAAAGAACTGGTGCTACATTACC	-			P-0060699-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			400	277	631	0	ENST00000274335.5:c.2021_2099del	p.Lys674ThrfsTer15	p.K674Tfs*15	ENST00000274335		673	AACAAAACAGCAACTGGCTATGGCTTTGCCGAGCCCTATAACTTGTACAGCTCTCTGAAAGAACTGGTGCTACATTACCaa/aa																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505342	186505342	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0060725-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	89	602	0	ENST00000323963.5:c.968C>G	p.Ser323Ter	p.S323*	ENST00000323963		323	tCa/tGa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647508	23647508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060725-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	94	516	0	ENST00000261584.4:c.359G>T	p.Arg120Ile	p.R120I	ENST00000261584	NM_024675.3	120	aGa/aTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0060725-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	69	394	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106731	27106731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060725-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			669	110	827	0	ENST00000324856.7:c.6342del	p.Gln2115ArgfsTer20	p.Q2115Rfs*20	ENST00000324856	NM_006015.4	2114	ccG/cc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32915247	32915247	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs876658504		P-0060725-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	69	629	0	ENST00000380152.3:c.6755C>G	p.Ser2252Cys	p.S2252C	ENST00000380152		2252	tCt/tGt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426794	212426794	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060725-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	75	556	0	ENST00000342788.4:c.2321G>T	p.Ser774Ile	p.S774I	ENST00000342788	NM_005235.2	774	aGt/aTt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169002	32169002	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060725-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	115	811	0	ENST00000375023.3:c.4031G>C	p.Gly1344Ala	p.G1344A	ENST00000375023	NM_004557.3	1344	gGg/gCg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959091	2959092	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0060725-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	78	713	0	ENST00000396946.4:c.2424_2425delinsAA	p.Tyr808_Gln809delinsTer	p.Y808_Q809delins*	ENST00000396946	NM_032415.4	808	taCCag/taAAag																																																																															
TSC1	7248	MSKCC	GRCh37	9	135779081	135779081	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060725-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	106	649	0	ENST00000298552.3:c.2165A>C	p.Lys722Thr	p.K722T	ENST00000298552	NM_001162426.1	722	aAg/aCg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045525	47045526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGAGCCCAAGAGG			P-0060725-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	82	856	0	ENST00000329236.7:c.2261_2273dup	p.Lys759AlafsTer27	p.K759Afs*27	ENST00000329236	NM_001204466.1	753	cca/ccAGAGCCCAAGAGGa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T	rs730881673		P-0060792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			776	220	863	0	ENST00000304494.5:c.131dup	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347108	89347108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs907255990		P-0060792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			904	181	907	0	ENST00000301030.4:c.5842G>A	p.Val1948Ile	p.V1948I	ENST00000301030	NM_001256183.1	1948	Gtt/Att																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575677	48575677	+	stop_gained	Nonsense_Mutation	SNP	T	T	G	rs377767329		P-0060792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			69	17	169	0	ENST00000342988.3:c.437T>G	p.Leu146Ter	p.L146*	ENST00000342988	NM_005359.5	146	tTa/tGa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212459	5212459	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182037655		P-0060792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			833	97	733	1	ENST00000357368.4:c.4658C>T	p.Thr1553Met	p.T1553M	ENST00000357368	NM_002850.3	1553	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380276	+	missense_variant	Missense_Mutation	DNP	TT	TT	CA			P-0060792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	99	405	1	ENST00000256078.4:c.182_183delinsTG	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAA/cTG																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476399	88476399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	92	518	0	ENST00000360948.2:c.1733C>A	p.Thr578Asn	p.T578N	ENST00000360948	NM_001012338.2	578	aCc/aAc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732996	30732996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104893809		P-0060792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			845	183	761	0	ENST00000359013.4:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000359013	NM_001024847.2	562	Cgc/Tgc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117631356	117631356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	73	437	0	ENST00000368508.3:c.6322G>A	p.Asp2108Asn	p.D2108N	ENST00000368508	NM_002944.2	2108	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579372	7579372	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	296	555	0	ENST00000269305.4:c.315del	p.Ser106AlafsTer17	p.S106Afs*17	ENST00000269305	NM_001126112.2	105	ggC/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0060812-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	210	273	2	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061138	38061138	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			774	27	460	0	ENST00000250448.2:c.851del	p.Gly284AlafsTer37	p.G284Afs*37	ENST00000250448	NM_004496.3	284	gGc/gc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061189	38061198	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAAGCGCT	TTGAAGCGCT	-			P-0060815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	54	420	0	ENST00000250448.2:c.791_800del	p.Lys264SerfsTer54	p.K264Sfs*54	ENST00000250448	NM_004496.3	264	aAGCGCTTCAAg/ag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0060821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	17	608	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs193920894		P-0060821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	108	526	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021658	31021658	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0060821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			648	36	641	0	ENST00000375687.4:c.1657G>T	p.Glu553Ter	p.E553*	ENST00000375687	NM_015338.5	553	Gaa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55211107	55211107	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	95	534	0	ENST00000275493.2:c.350A>G	p.Tyr117Cys	p.Y117C	ENST00000275493	NM_005228.3	117	tAt/tGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860392	151860392	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776155729		P-0060821-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	134	727	0	ENST00000262189.6:c.10270G>A	p.Ala3424Thr	p.A3424T	ENST00000262189	NM_170606.2	3424	Gct/Act																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0060828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	259	668	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0060828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	311	732	2	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
TP53	7157	MSKCC	GRCh37	17	7579861	7579861	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs876658627		P-0060828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	475	591	0	ENST00000269305.4:c.52del	p.Thr18HisfsTer26	p.T18Hfs*26	ENST00000269305	NM_001126112.2	18	Aca/ca																																																																															
MST1	4485	MSKCC	GRCh37	3	49722761	49722761	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs62262682		P-0060828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			39	16	39	0	ENST00000449682.2:c.1478G>T	p.Arg493Leu	p.R493L	ENST00000449682	NM_020998.3	493	cGt/cTt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	432811	432811	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	175	539	0	ENST00000399788.2:c.2105A>G	p.His702Arg	p.H702R	ENST00000399788	NM_001042603.1	702	cAt/cGt																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589545	69589545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060828-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1072	193	1463	2	ENST00000168712.1:c.308G>A	p.Arg103His	p.R103H	ENST00000168712	NM_002007.2	103	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0060844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			103	38	563	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856521	111856521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	20	643	0	ENST00000341259.2:c.572C>T	p.Pro191Leu	p.P191L	ENST00000341259	NM_005475.2	191	cCg/cTg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482550	56482550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	32	513	0	ENST00000267101.3:c.1007C>T	p.Ser336Phe	p.S336F	ENST00000267101	NM_001982.3	336	tCt/tTt																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24133998	24133998	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060844-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	17	556	0	ENST00000263121.7:c.149T>G	p.Leu50Arg	p.L50R	ENST00000263121	NM_003073.3	50	cTc/cGc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89693003	89693003	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0060847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	64	260	0	ENST00000371953.3:c.491del	p.Lys164ArgfsTer3	p.K164Rfs*3	ENST00000371953	NM_000314.4	163	Aaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs587781642		P-0060847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	128	496	0	ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696433	47696433	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	97	392	0	ENST00000347630.2:c.390C>G	p.Asp130Glu	p.D130E	ENST00000347630	NM_001007230.1	130	gaC/gaG																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061139	38061140	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCCGCTTCCGCT			P-0060847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	80	439	0	ENST00000250448.2:c.838_849dup	p.Ser280_Gly283dup	p.S280_G283dup	ENST00000250448	NM_004496.3	280	-/AGCGGAAGCGGG																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061214	38061228	+	inframe_deletion	In_Frame_Del	DEL	AGCAGCCGTTCTCGA	AGCAGCCGTTCTCGA	-			P-0060847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			742	110	455	0	ENST00000250448.2:c.761_775del	p.Phe254_Cys258del	p.F254_C258del	ENST00000250448	NM_004496.3	254	tTCGAGAACGGCTGCTac/tac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393585	139393585	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759643831		P-0060847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			738	80	524	0	ENST00000277541.6:c.6061G>A	p.Val2021Ile	p.V2021I	ENST00000277541	NM_017617.3	2021	Gtc/Atc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591092	67591092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	61	331	0	ENST00000274335.5:c.1685G>C	p.Arg562Pro	p.R562P	ENST00000274335		562	cGt/cCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0060848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	61	264	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428712	49428712	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0060848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			702	50	408	0	ENST00000301067.7:c.10238A>T	p.Asp3413Val	p.D3413V	ENST00000301067	NM_003482.3	3413	gAc/gTc																																																																															
INHA	3623	MSKCC	GRCh37	2	220439511	220439511	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			762	42	584	0	ENST00000243786.2:c.364C>A	p.Arg122Ser	p.R122S	ENST00000243786	NM_002191.3	122	Cgc/Agc																																																																															
IRF4	3662	MSKCC	GRCh37	6	401513	401513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0060848-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	46	506	0	ENST00000380956.4:c.835G>T	p.Gly279Ter	p.G279*	ENST00000380956	NM_001195286.1	279	Gga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			895	136	933	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			834	148	936	0	ENST00000304494.5:c.242C>G	p.Pro81Arg	p.P81R	ENST00000304494	NM_000077.4	81	cCc/cGc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630459	187630459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			677	121	777	0	ENST00000441802.2:c.523G>A	p.Asp175Asn	p.D175N	ENST00000441802	NM_005245.3	175	Gat/Aat																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88671966	88671966	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0060849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	35	290	0	ENST00000360948.2:c.1205-1G>A		p.X402_splice	ENST00000360948	NM_001012338.2	402																																																																																
DNAJB1	3337	MSKCC	GRCh37	19	14627582	14627582	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			816	130	725	0	ENST00000254322.2:c.488del	p.Pro163GlnfsTer21	p.P163Qfs*21	ENST00000254322	NM_006145.1	163	cCa/ca																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410807	63410807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	91	765	1	ENST00000330258.3:c.2360C>A	p.Ser787Tyr	p.S787Y	ENST00000330258	NM_152424.3	787	tCc/tAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168798	56168798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374345167		P-0060849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	49	462	0	ENST00000399503.3:c.1652C>T	p.Pro551Leu	p.P551L	ENST00000399503	NM_005921.1	551	cCt/cTt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933694	36933694	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			772	106	900	0	ENST00000361632.4:c.1705G>C	p.Ala569Pro	p.A569P	ENST00000361632		569	Gct/Cct																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100563	8100563	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs987472805		P-0060849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			979	117	927	0	ENST00000346208.3:c.537C>A	p.Asp179Glu	p.D179E	ENST00000346208		179	gaC/gaA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49419977	49419977	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			777	123	725	0	ENST00000301067.7:c.15772G>T	p.Ala5258Ser	p.A5258S	ENST00000301067	NM_003482.3	5258	Gcc/Tcc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38591640	38591654	+	inframe_deletion	In_Frame_Del	DEL	ACTTGGAGGGAGTGG	ACTTGGAGGGAGTGG	-			P-0060849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	77	530	0	ENST00000299084.4:c.102_116del	p.Gly35_Leu39del	p.G35_L39del	ENST00000299084	NM_152594.2	33	ccACTTGGAGGGAGTGGa/cca																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544685	86544685	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0060849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			894	114	883	0	ENST00000262426.4:c.510C>G	p.Tyr170Ter	p.Y170*	ENST00000262426	NM_001451.2	170	taC/taG																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170433	11170433	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			781	72	636	0	ENST00000344626.4:c.4640A>G	p.Tyr1547Cys	p.Y1547C	ENST00000344626	NM_003072.3	1547	tAt/tGt																																																																															
KIT	3815	MSKCC	GRCh37	4	55565847	55565847	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	67	494	0	ENST00000288135.5:c.671G>C	p.Arg224Thr	p.R224T	ENST00000288135	NM_000222.2	224	aGg/aCg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201672	66201672	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0060849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	61	609	0	ENST00000273854.3:c.2830A>T	p.Thr944Ser	p.T944S	ENST00000273854	NM_004439.5	944	Acg/Tcg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956694	93956694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	43	348	0	ENST00000369303.4:c.2542G>A	p.Ala848Thr	p.A848T	ENST00000369303	NM_004440.3	848	Gca/Aca																																																																															
ABL1	25	MSKCC	GRCh37	9	133755928	133755928	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			741	88	716	0	ENST00000318560.5:c.1555G>C	p.Val519Leu	p.V519L	ENST00000318560	NM_005157.4	519	Gtg/Ctg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401038	139401038	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1227253271		P-0060849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			900	120	822	0	ENST00000277541.6:c.3955G>A	p.Gly1319Arg	p.G1319R	ENST00000277541	NM_017617.3	1319	Ggg/Agg																																																																															
AR	367	MSKCC	GRCh37	X	66765562	66765562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			862	122	978	0	ENST00000374690.3:c.574C>G	p.Gln192Glu	p.Q192E	ENST00000374690	NM_000044.3	192	Caa/Gaa																																																																															
MED12	9968	MSKCC	GRCh37	X	70352751	70352751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060849-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	82	550	0	ENST00000374080.3:c.4472G>T	p.Gly1491Val	p.G1491V	ENST00000374080		1491	gGg/gTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0060857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	9	517	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577111	7577111	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs786202082		P-0060857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	425	606	0	ENST00000269305.4:c.827C>A	p.Ala276Asp	p.A276D	ENST00000269305	NM_001126112.2	276	gCc/gAc																																																																															
ALK	238	MSKCC	GRCh37	2	30142942	30142942	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1442742511		P-0060857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	125	689	0	ENST00000389048.3:c.584C>T	p.Ala195Val	p.A195V	ENST00000389048	NM_004304.4	195	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112173659	112173659	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0060857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	104	460	1	ENST00000257430.4:c.2368A>T	p.Arg790Ter	p.R790*	ENST00000257430	NM_000038.5	790	Aga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0060857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	174	321	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120472	70120473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0060857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			599	149	754	0	ENST00000245479.2:c.1476_1477dup	p.His493ProfsTer31	p.H493Pfs*31	ENST00000245479	NM_000346.3	492	acc/aCCcc																																																																															
APC	324	MSKCC	GRCh37	5	112176033	112176033	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060857-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	205	511	0	ENST00000257430.4:c.4742del	p.Ser1581LeufsTer69	p.S1581Lfs*69	ENST00000257430	NM_000038.5	1581	tCt/tt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0060861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			706	115	583	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0060861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			876	237	806	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0060861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	234	543	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912149	114912149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0060861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			815	139	525	0	ENST00000543371.1:c.1219C>T	p.Arg407Ter	p.R407*	ENST00000543371	NM_001198531.1	407	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101199	41101199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368237025		P-0060861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			833	127	568	0	ENST00000373198.4:c.1157C>T	p.Pro386Leu	p.P386L	ENST00000373198	NM_133170.3	386	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0060861-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	102	361	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0060862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	404	448	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T	rs886039483		P-0060862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	252	466	1	ENST00000269305.4:c.376T>A	p.Tyr126Asn	p.Y126N	ENST00000269305	NM_001126112.2	126	Tac/Aac																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982073	201982073	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0060862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	270	488	0	ENST00000359651.3:c.599-2A>T		p.X200_splice	ENST00000359651		200																																																																																
EPHA7	2045	MSKCC	GRCh37	6	94120741	94120741	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0060862-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	92	382	0	ENST00000369303.4:c.310T>G	p.Phe104Val	p.F104V	ENST00000369303	NM_004440.3	104	Ttc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578507	7578507	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519977		P-0060866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	202	752	0	ENST00000269305.4:c.423C>G	p.Cys141Trp	p.C141W	ENST00000269305	NM_001126112.2	141	tgC/tgG																																																																															
KDM5A	5927	MSKCC	GRCh37	12	442679	442679	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0060866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1108	79	716	0	ENST00000399788.2:c.1627A>T	p.Asn543Tyr	p.N543Y	ENST00000399788	NM_001042603.1	543	Aac/Tac																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472622	88472622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	120	612	0	ENST00000360948.2:c.1933C>A	p.Arg645Ser	p.R645S	ENST00000360948	NM_001012338.2	645	Cgc/Agc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016567	12016567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	99	287	0	ENST00000353533.5:c.703A>G	p.Ile235Val	p.I235V	ENST00000353533	NM_003010.3	235	Att/Gtt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144005	11144005	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0060866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	174	636	0	ENST00000344626.4:c.3586C>T	p.Gln1196Ter	p.Q1196*	ENST00000344626	NM_003072.3	1196	Cag/Tag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134977855	134977855	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0060866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	91	433	0	ENST00000398015.3:c.2848G>A	p.Asp950Asn	p.D950N	ENST00000398015	NM_004441.4	950	Gac/Aac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484318	8484318	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0060866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	98	386	0	ENST00000356435.5:c.3214A>T	p.Ile1072Phe	p.I1072F	ENST00000356435		1072	Att/Ttt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484338	8484338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060866-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	84	333	0	ENST00000356435.5:c.3194G>A	p.Gly1065Asp	p.G1065D	ENST00000356435		1065	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579397	7579397	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0060869-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	227	588	0	ENST00000269305.4:c.290del	p.Val97AlafsTer26	p.V97Afs*26	ENST00000269305	NM_001126112.2	97	gTc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0060869-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	68	289	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912174	114912174	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060869-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	104	351	0	ENST00000543371.1:c.1244C>G	p.Pro415Arg	p.P415R	ENST00000543371	NM_001198531.1	415	cCc/cGc																																																																															
GAB1	2549	MSKCC	GRCh37	4	144381564	144381564	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060869-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	56	405	0	ENST00000262995.4:c.1817C>G	p.Thr606Arg	p.T606R	ENST00000262995	NM_207123.2	606	aCa/aGa																																																																															
APC	324	MSKCC	GRCh37	5	112175566	112175567	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0060869-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	148	509	0	ENST00000257430.4:c.4276_4277dup	p.Ser1426ArgfsTer48	p.S1426Rfs*48	ENST00000257430	NM_000038.5	1425	-/AG																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	205	801	0	ENST00000250448.2:c.798C>G	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttG																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061516	38061517	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGC	rs763371315		P-0060870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	87	688	0	ENST00000250448.2:c.470_472dup	p.Gly157dup	p.G157dup	ENST00000250448	NM_004496.3	157	gac/gGCGac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954022	32954023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1305653361		P-0060870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	81	447	3	ENST00000380152.3:c.9097dup	p.Thr3033AsnfsTer11	p.T3033Nfs*11	ENST00000380152		3030	aca/acAa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245034	46245035	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0060870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			708	299	887	0	ENST00000334344.6:c.3128_3129del	p.Gln1043ProfsTer13	p.Q1043Pfs*13	ENST00000334344	NM_152641.2	1043	cAA/c																																																																															
ATR	545	MSKCC	GRCh37	3	142204012	142204012	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	145	500	0	ENST00000350721.4:c.6191T>C	p.Leu2064Pro	p.L2064P	ENST00000350721	NM_001184.3	2064	cTc/cCc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	97	465	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	147	711	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517202		P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	17	594	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																															
AXL	558	MSKCC	GRCh37	19	41743932	41743933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778012871		P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	88	776	0	ENST00000301178.4:c.874dup	p.His292ProfsTer47	p.H292Pfs*47	ENST00000301178	NM_021913.4	289	-/C																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	267	953	0	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																																																															
IRF4	3662	MSKCC	GRCh37	6	405045	405045	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377483798		P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	267	543	0	ENST00000380956.4:c.1127G>A	p.Arg376His	p.R376H	ENST00000380956	NM_001195286.1	376	cGc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255883	16255883	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	144	718	0	ENST00000375759.3:c.3154del	p.Ile1052SerfsTer40	p.I1052Sfs*40	ENST00000375759	NM_015001.2	1050	Aaa/aa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129338	152129338	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1361952517		P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	145	782	0	ENST00000206249.3:c.296del	p.Pro99HisfsTer10	p.P99Hfs*10	ENST00000206249	NM_000125.3	97	ttC/tt																																																																															
NUP93	9688	MSKCC	GRCh37	16	56792470	56792470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	132	593	0	ENST00000308159.5:c.200G>A	p.Arg67Gln	p.R67Q	ENST00000308159	NM_014669.4	67	cGg/cAg																																																																															
AKT1	207	MSKCC	GRCh37	14	105241276	105241276	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	102	774	0	ENST00000349310.3:c.632C>T	p.Thr211Ile	p.T211I	ENST00000349310	NM_001014432.1	211	aCa/aTa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	68	324	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061725	38061726	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs766493600		P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	26	940	1	ENST00000250448.2:c.263dup	p.Ser89LeufsTer138	p.S89Lfs*138	ENST00000250448	NM_004496.3	88	ggc/ggGc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030467	47030469	+	intron_variant	Intron	DEL	GGC	GGC	-	rs781998738		P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	117	683	12	ENST00000329236.7:c.201+1582_201+1584del		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
TAP1	6890	MSKCC	GRCh37	6	32821048	32821048	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	276	924	2	ENST00000354258.4:c.546del	p.Ser184ProfsTer54	p.S184Pfs*54	ENST00000354258	NM_000593.5	182	ccC/cc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099403	157099408	+	inframe_deletion	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	rs1433300399		P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			748	83	948	0	ENST00000346085.5:c.357_362del	p.Gln130_Gln131del	p.Q130_Q131del	ENST00000346085	NM_020732.3	114	CAGCAG/-																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022502	12022502	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1232497641		P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			575	255	951	0	ENST00000396373.4:c.613del	p.Leu205TrpfsTer4	p.L205Wfs*4	ENST00000396373	NM_001987.4	203	tCc/tc																																																																															
AURKB	9212	MSKCC	GRCh37	17	8111056	8111056	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs548042738		P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	160	697	0	ENST00000585124.1:c.151G>T	p.Ala51Ser	p.A51S	ENST00000585124	NM_004217.3	51	Gct/Tct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214713	36214714	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	52	777	1	ENST00000222270.7:c.3145dup	p.Ala1049GlyfsTer39	p.A1049Gfs*39	ENST00000222270	NM_014727.1	1047	cgg/cGgg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119717	70119717	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	167	465	1	ENST00000245479.2:c.723del	p.Thr243ProfsTer10	p.T243Pfs*10	ENST00000245479	NM_000346.3	240	aCc/ac																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598252	28598252	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs994631336		P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	181	743	0	ENST00000253063.3:c.224G>A	p.Arg75Gln	p.R75Q	ENST00000253063	NM_031459.4	75	cGa/cAa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047665	180047665	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757057248		P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	131	825	0	ENST00000261937.6:c.2350G>A	p.Val784Ile	p.V784I	ENST00000261937	NM_182925.4	784	Gtc/Atc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605215	46605215	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1407435090		P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	127	636	9	ENST00000263734.3:c.1432A>T	p.Ser478Cys	p.S478C	ENST00000263734	NM_001430.4	478	Agc/Tgc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213019	39213020	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	139	753	0	ENST00000402219.2:c.3947_3948del	p.His1316ProfsTer29	p.H1316Pfs*29	ENST00000402219	NM_005633.3	1316	cAC/c																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130433	29130434	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs876661156		P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	111	832	0	ENST00000328354.6:c.276dup	p.Trp93LeufsTer15	p.W93Lfs*15	ENST00000328354	NM_007194.3	92	-/C																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78899174	78899174	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199756138		P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	150	650	0	ENST00000306801.3:c.2813C>T	p.Ala938Val	p.A938V	ENST00000306801	NM_020761.2	938	gCg/gTg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99472846	99472846	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778465734		P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	131	596	0	ENST00000268035.6:c.2842G>A	p.Val948Met	p.V948M	ENST00000268035	NM_000875.3	948	Gtg/Atg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43713238	43713238	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1273385388		P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	137	718	0	ENST00000382044.4:c.4235G>A	p.Arg1412Gln	p.R1412Q	ENST00000382044	NM_001141980.1	1412	cGg/cAg																																																																															
BARD1	580	MSKCC	GRCh37	2	215617262	215617262	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753479021		P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	95	388	0	ENST00000260947.4:c.1586G>A	p.Arg529Gln	p.R529Q	ENST00000260947	NM_000465.2	529	cGg/cAg																																																																															
TET2	54790	MSKCC	GRCh37	4	106190884	106190884	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	169	547	0	ENST00000380013.4:c.4162A>G	p.Met1388Val	p.M1388V	ENST00000380013	NM_001127208.2	1388	Atg/Gtg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372392	55372392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	100	892	0	ENST00000297316.4:c.1082C>T	p.Thr361Met	p.T361M	ENST00000297316	NM_022454.3	361	aCg/aTg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44911007	44911010	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	59	691	0	ENST00000377967.4:c.711_714del	p.Ser238HisfsTer3	p.S238Hfs*3	ENST00000377967	NM_021140.2	236	aaTCTT/aa																																																																															
APC	324	MSKCC	GRCh37	5	112170862	112170862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs1060503318		P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	82	395	0	ENST00000257430.4:c.1958G>T	p.Arg653Met	p.R653M	ENST00000257430	NM_000038.5	653	aGg/aTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351844	89351844	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	163	670	0	ENST00000301030.4:c.1106del	p.Lys369ArgfsTer58	p.K369Rfs*58	ENST00000301030	NM_001256183.1	369	aAg/ag																																																																															
NUF2	83540	MSKCC	GRCh37	1	163325177	163325177	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	77	385	0	ENST00000271452.3:c.1316del	p.Lys439ArgfsTer10	p.K439Rfs*10	ENST00000271452	NM_145697.2	438	gAa/ga																																																																															
PAK1	5058	MSKCC	GRCh37	11	77047187	77047187	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	143	742	0	ENST00000356341.3:c.1357A>G	p.Met453Val	p.M453V	ENST00000356341	NM_002576.4	453	Atg/Gtg																																																																															
CCND2	894	MSKCC	GRCh37	12	4383229	4383229	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	49	768	2	ENST00000261254.3:c.23T>C	p.Val8Ala	p.V8A	ENST00000261254	NM_001759.3	8	gTg/gCg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245464	46245465	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	164	709	0	ENST00000334344.6:c.3560_3561del	p.Val1187GlufsTer53	p.V1187Efs*53	ENST00000334344	NM_152641.2	1186	acTGtg/actg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986740	36986740	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	24	855	0	ENST00000354822.5:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000354822	NM_001079668.2	317	Cag/Tag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724872	43724872	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	124	653	0	ENST00000382044.4:c.3195del	p.Asn1066ThrfsTer30	p.N1066Tfs*30	ENST00000382044	NM_001141980.1	1065	ggG/gg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786696	3786697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	142	669	0	ENST00000262367.5:c.4514dup	p.Met1506AspfsTer13	p.M1506Dfs*13	ENST00000262367	NM_004380.2	1505	aag/aaAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845574	72845574	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	61	802	1	ENST00000268489.5:c.3766del	p.Leu1256CysfsTer32	p.L1256Cfs*32	ENST00000268489	NM_006885.3	1256	Ctg/tg																																																																															
NF1	4763	MSKCC	GRCh37	17	29661917	29661917	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	78	504	0	ENST00000358273.4:c.5878del	p.Cys1960AlafsTer19	p.C1960Afs*19	ENST00000358273	NM_001042492.2	1958	cgT/cg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272435	15272435	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752977489		P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	130	790	0	ENST00000263388.2:c.6004G>A	p.Asp2002Asn	p.D2002N	ENST00000263388	NM_000435.2	2002	Gac/Aac																																																																															
ALK	238	MSKCC	GRCh37	2	29451841	29451841	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	66	391	0	ENST00000389048.3:c.2724G>T	p.Gln908His	p.Q908H	ENST00000389048	NM_004304.4	908	caG/caT																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607508	46607508	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	151	814	0	ENST00000263734.3:c.1698del	p.Met567Ter	p.M567*	ENST00000263734	NM_001430.4	566	gCc/gc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225365143	225365143	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	182	557	0	ENST00000264414.4:c.1547A>C	p.Gln516Pro	p.Q516P	ENST00000264414	NM_003590.4	516	cAg/cCg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561319	9561319	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753315436		P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	175	619	0	ENST00000353224.5:c.463G>A	p.Asp155Asn	p.D155N	ENST00000353224	NM_177990.2	155	Gat/Aat																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280730	41280730	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	135	741	0	ENST00000349496.5:c.2243A>G	p.Tyr748Cys	p.Y748C	ENST00000349496	NM_001904.3	748	tAt/tGt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200024	128200024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	130	957	0	ENST00000341105.2:c.1281del	p.Phe428SerfsTer49	p.F428Sfs*49	ENST00000341105	NM_032638.4	427	ccC/cc																																																																															
KIT	3815	MSKCC	GRCh37	4	55589801	55589801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	122	504	0	ENST00000288135.5:c.1283G>A	p.Cys428Tyr	p.C428Y	ENST00000288135	NM_000222.2	428	tGt/tAt																																																																															
ALB	213	MSKCC	GRCh37	4	74272414	74272414	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	96	449	0	ENST00000295897.4:c.206A>G	p.Glu69Gly	p.E69G	ENST00000295897	NM_000477.5	69	gAa/gGa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549499	187549499	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	145	698	0	ENST00000441802.2:c.4619C>A	p.Pro1540His	p.P1540H	ENST00000441802	NM_005245.3	1540	cCt/cAt																																																																															
RB1	5925	MSKCC	GRCh37	13	48953760	48953760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913302		P-0060874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			39	90	228	0	ENST00000267163.4:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000267163	NM_000321.2	455	Cga/Tga																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0060874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	353	506	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
NBN	4683	MSKCC	GRCh37	8	90955540	90955540	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060874-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	213	350	0	ENST00000265433.3:c.2125A>G	p.Ile709Val	p.I709V	ENST00000265433	NM_002485.4	709	Ata/Gta																																																																															
APC	324	MSKCC	GRCh37	5	112173656	112173656	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398123117		P-0060876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	94	353	0	ENST00000257430.4:c.2365C>T	p.Gln789Ter	p.Q789*	ENST00000257430	NM_000038.5	789	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097644	8097644	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762722802		P-0060876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	99	544	3	ENST00000346208.3:c.26G>A	p.Arg9His	p.R9H	ENST00000346208		9	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108165729	108165729	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs762083530		P-0060876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			106	301	280	0	ENST00000278616.4:c.4852C>T	p.Arg1618Ter	p.R1618*	ENST00000278616	NM_000051.3	1618	Cga/Tga																																																																															
STK40	83931	MSKCC	GRCh37	1	36809525	36809525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	60	491	0	ENST00000373129.3:c.940G>A	p.Asp314Asn	p.D314N	ENST00000373129	NM_032017.1	314	Gac/Aac																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739370	145739370	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1420577458		P-0060876-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	72	494	0	ENST00000428558.2:c.2000C>T	p.Pro667Leu	p.P667L	ENST00000428558	NM_004260.3	667	cCa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0060880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	174	782	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0060880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	62	388	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660045		P-0060880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	76	678	0	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0060880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	81	338	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157510895	157510895	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	81	736	1	ENST00000346085.5:c.3670A>G	p.Thr1224Ala	p.T1224A	ENST00000346085	NM_020732.3	1224	Act/Gct																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488896	231488896	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060880-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	43	428	0	ENST00000295050.7:c.1259T>G	p.Phe420Cys	p.F420C	ENST00000295050	NM_032018.5	420	tTt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0060895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	400	650	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175417	112175418	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0060895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	268	512	0	ENST00000257430.4:c.4127_4128del	p.Tyr1376CysfsTer9	p.Y1376Cfs*9	ENST00000257430	NM_000038.5	1376	TAt/t																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120160	70120160	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0060895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	179	648	0	ENST00000245479.2:c.1162G>T	p.Glu388Ter	p.E388*	ENST00000245479	NM_000346.3	388	Gag/Tag																																																																															
NPM1	4869	MSKCC	GRCh37	5	170819954	170819968	+	inframe_deletion	In_Frame_Del	DEL	GATGATGATGAAGAG	GATGATGATGAAGAG	-	rs764077801		P-0060895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	52	394	0	ENST00000296930.5:c.511_524+1del		p.DDDEEdel	ENST00000296930	NM_002520.6	166	GATGATGATGAAGAG/-																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793433	18793433	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202143029		P-0060895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	86	360	0	ENST00000266497.5:c.4130G>A	p.Arg1377His	p.R1377H	ENST00000266497		1377	cGt/cAt																																																																															
LMO1	4004	MSKCC	GRCh37	11	8248560	8248560	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0060895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	277	495	0	ENST00000335790.3:c.327T>G	p.Tyr109Ter	p.Y109*	ENST00000335790	NM_002315.2	109	taT/taG																																																																															
SETD8	387893	MSKCC	GRCh37	12	123892084	123892091	+	frameshift_variant	Frame_Shift_Del	DEL	ATCACAGC	ATCACAGC	-			P-0060895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	22	237	0	ENST00000330479.4:c.894_901del	p.Asn298LysfsTer35	p.N298Kfs*35	ENST00000330479	NM_020382.3	298	aATCACAGC/a																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86545128	86545128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060895-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			896	178	563	0	ENST00000262426.4:c.953G>A	p.Ser318Asn	p.S318N	ENST00000262426	NM_001451.2	318	aGc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578242	7578242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882003		P-0060912-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	246	594	0	ENST00000269305.4:c.607G>A	p.Val203Met	p.V203M	ENST00000269305	NM_001126112.2	203	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0060912-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	395	245	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060941-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	74	378	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604656	48604656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060941-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	45	411	0	ENST00000342988.3:c.1478A>G	p.Asp493Gly	p.D493G	ENST00000342988	NM_005359.5	493	gAt/gGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971130	21971130	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060941-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	97	540	0	ENST00000304494.5:c.228del	p.Thr77LeufsTer69	p.T77Lfs*69	ENST00000304494	NM_000077.4	76	gcC/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0060941-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	124	287	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
APLNR	187	MSKCC	GRCh37	11	57003772	57003772	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs199589565		P-0060941-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	42	554	0	ENST00000606794.1:c.707G>T	p.Arg236Leu	p.R236L	ENST00000606794	NM_005161.4	236	cGc/cTc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249938	110249938	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0060941-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	96	519	0	ENST00000374672.4:c.737C>A	p.Ser246Ter	p.S246*	ENST00000374672	NM_004235.4	246	tCg/tAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092809	27092809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0060982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	51	626	0	ENST00000324856.7:c.2830C>T	p.Gln944Ter	p.Q944*	ENST00000324856	NM_006015.4	944	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717769	89717770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0060982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	83	283	1	ENST00000371953.3:c.800dup	p.Asp268GlyfsTer30	p.D268Gfs*30	ENST00000371953	NM_000314.4	265	cta/ctAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs879253942		P-0060982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	228	651	0	ENST00000269305.4:c.794T>C	p.Leu265Pro	p.L265P	ENST00000269305	NM_001126112.2	265	cTg/cCg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21348558	21348558	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0060982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			725	202	1038	0	ENST00000215739.8:c.1615G>A	p.Gly539Ser	p.G539S	ENST00000215739	NM_006767.3	539	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112151216	112151216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	125	434	0	ENST00000257430.4:c.859G>A	p.Glu287Lys	p.E287K	ENST00000257430	NM_000038.5	287	Gaa/Aaa																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139810997	139810997	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0060982-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	89	523	0	ENST00000247668.2:c.608del	p.Gln203ArgfsTer25	p.Q203Rfs*25	ENST00000247668	NM_021138.3	203	cAg/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0060984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			501	77	485	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
IGF2	3481	MSKCC	GRCh37	11	2154225	2154225	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1014211286		P-0060984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	80	554	0	ENST00000434045.2:c.703C>T	p.Arg235Trp	p.R235W	ENST00000434045	NM_001127598.1	235	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0060984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	31	278	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78923263	78923263	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	69	411	0	ENST00000306801.3:c.3286T>C	p.Trp1096Arg	p.W1096R	ENST00000306801	NM_020761.2	1096	Tgg/Cgg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485103	57485103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	163	567	0	ENST00000371085.3:c.937C>T	p.Pro313Ser	p.P313S	ENST00000371085	NM_000516.4	313	Cca/Tca																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426784	121426784	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765432081		P-0052522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			67	400	644	0	ENST00000257555.6:c.475C>T	p.Arg159Trp	p.R159W	ENST00000257555		159	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578234	7578234	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs786202222		P-0052522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			85	390	633	0	ENST00000269305.4:c.615T>A	p.Tyr205Ter	p.Y205*	ENST00000269305	NM_001126112.2	205	taT/taA																																																																															
RB1	5925	MSKCC	GRCh37	13	49033965	49033965	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	338	479	1	ENST00000267163.4:c.2102A>G	p.Asp701Gly	p.D701G	ENST00000267163	NM_000321.2	701	gAc/gGc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982426	201982426	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0052522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			250	194	562	0	ENST00000359651.3:c.805G>T	p.Ala269Ser	p.A269S	ENST00000359651		269	Gcg/Tcg																																																																															
POLE	5426	MSKCC	GRCh37	12	133212519	133212519	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371862779		P-0060268-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	262	466	0	ENST00000320574.5:c.5770G>A	p.Gly1924Arg	p.G1924R	ENST00000320574	NM_006231.2	1924	Gga/Aga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061215	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCAGCCGTTCTCGAACATGTT	GCAGCCGTTCTCGAACATGTT	-			P-0060424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	28	699	0	ENST00000250448.2:c.754_774del	p.Asn252_Cys258del	p.N252_C258del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTGC/-																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0060424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	64	505	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46532645	46532645	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060424-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	17	489	0	ENST00000262741.5:c.433C>G	p.Leu145Val	p.L145V	ENST00000262741	NM_003629.3	145	Ctt/Gtt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0060580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	262	401	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023559	27023560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0060652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	54	514	0	ENST00000324856.7:c.671dup	p.Pro225AlafsTer175	p.P225Afs*175	ENST00000324856	NM_006015.4	222	tac/taCc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436128	56436128	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0060652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	115	560	0	ENST00000407977.2:c.1009C>T	p.Arg337Ter	p.R337*	ENST00000407977		337	Cga/Tga																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891187	101891187	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	36	386	0	ENST00000374994.4:c.148A>G	p.Thr50Ala	p.T50A	ENST00000374994	NM_004612.2	50	Aca/Gca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0060652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	97	416	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115266558	115266558	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	21	400	0	ENST00000438362.2:c.1957A>G	p.Ser653Gly	p.S653G	ENST00000438362	NM_001242891.1	653	Agt/Ggt																																																																															
ATM	472	MSKCC	GRCh37	11	108199771	108199771	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0060652-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			152	66	383	0	ENST00000278616.4:c.7113T>G	p.Tyr2371Ter	p.Y2371*	ENST00000278616	NM_000051.3	2371	taT/taG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0060663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	258	413	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
CBL	867	MSKCC	GRCh37	11	119170354	119170354	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507498		P-0060663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	173	461	0	ENST00000264033.4:c.2584G>A	p.Glu862Lys	p.E862K	ENST00000264033	NM_005188.3	862	Gag/Aag																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518383	204518383	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0060663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			929	87	530	0	ENST00000367182.3:c.1046T>A	p.Ile349Lys	p.I349K	ENST00000367182	NM_001278516.1	349	aTa/aAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912094	114912094	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0060663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	138	347	0	ENST00000543371.1:c.1164G>C	p.Trp388Cys	p.W388C	ENST00000543371	NM_001198531.1	388	tgG/tgC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32928996	32928996	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0060663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	120	302	0	ENST00000380152.3:c.7008-2A>T		p.X2336_splice	ENST00000380152		2336																																																																																
ICOSLG	23308	MSKCC	GRCh37	21	45656986	45656986	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	195	447	0	ENST00000407780.3:c.170G>C	p.Ser57Thr	p.S57T	ENST00000407780	NM_001283052.1	57	aGt/aCt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44833947	44833948	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0060663-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	30	201	0	ENST00000377967.4:c.372dup	p.Asp125Ter	p.D125*	ENST00000377967	NM_021140.2	124	tct/tcTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692765	89692769	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CACAG	CACAG	-			P-0060673-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	11	355	0	ENST00000371953.3:c.254-5_254-1del		p.X85_splice	ENST00000371953	NM_000314.4	85																																																																																
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0060675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	10	599	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5208036	5208036	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772956659		P-0060711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	44	658	0	ENST00000357368.4:c.5675C>T	p.Thr1892Met	p.T1892M	ENST00000357368	NM_002850.3	1892	aCg/aTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202149940	202149940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	63	743	0	ENST00000358485.4:c.1381G>A	p.Gly461Arg	p.G461R	ENST00000358485	NM_001080125.1	461	Ggg/Agg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0060711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	21	298	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ETV6	2120	MSKCC	GRCh37	12	11992152	11992161	+	frameshift_variant	Frame_Shift_Del	DEL	CAATTGACAG	CAATTGACAG	-			P-0060711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	44	483	0	ENST00000396373.4:c.245_254del	p.Ile82ThrfsTer5	p.I82Tfs*5	ENST00000396373	NM_001987.4	81	cCAATTGACAGc/cc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435900	56435901	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0060711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	71	731	0	ENST00000407977.2:c.1235_1236dup	p.Ala413MetfsTer7	p.A413Mfs*7	ENST00000407977		412	-/AT																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981810	63981810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	62	666	0	ENST00000398590.3:c.2312G>A	p.Arg771Gln	p.R771Q	ENST00000398590	NM_001177387.1	771	cGg/cAg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043460	180043460	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	30	670	0	ENST00000261937.6:c.3126C>A	p.Asn1042Lys	p.N1042K	ENST00000261937	NM_182925.4	1042	aaC/aaA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412813	63412813	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060711-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	42	572	0	ENST00000330258.3:c.354del	p.Pro119LeufsTer51	p.P119Lfs*51	ENST00000330258	NM_152424.3	118	ctG/ct																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0060715-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	55	327	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175240	112175240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0060715-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			812	84	512	0	ENST00000257430.4:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000257430	NM_000038.5	1317	Gaa/Taa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174459	11174459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060715-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	124	481	0	ENST00000361445.4:c.7216G>A	p.Val2406Met	p.V2406M	ENST00000361445	NM_004958.3	2406	Gtg/Atg																																																																															
MDM4	4194	MSKCC	GRCh37	1	204494707	204494707	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060715-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			682	124	429	0	ENST00000367182.3:c.61C>G	p.Pro21Ala	p.P21A	ENST00000367182	NM_001278516.1	21	Cct/Gct																																																																															
ATM	472	MSKCC	GRCh37	11	108160342	108160342	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060715-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	126	272	0	ENST00000278616.4:c.4250A>G	p.Lys1417Arg	p.K1417R	ENST00000278616	NM_000051.3	1417	aAa/aGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577567	7577569	+	frameshift_variant	Frame_Shift_Del	DEL	ACA	ACA	G			P-0060715-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	181	470	0	ENST00000269305.4:c.712_714delinsC	p.Cys238GlnfsTer25	p.C238Qfs*25	ENST00000269305	NM_001126112.2	238	TGT/C																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0060717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	70	592	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0060717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			737	96	646	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	9	452	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0060717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	153	541	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73334690	73334690	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs575285131		P-0060717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	98	373	0	ENST00000377767.4:c.2770C>T	p.Arg924Ter	p.R924*	ENST00000377767	NM_014953.3	924	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782596		P-0060717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			697	265	748	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0060717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	293	500	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
KDR	3791	MSKCC	GRCh37	4	55979624	55979624	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0060717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	30	413	0	ENST00000263923.4:c.823C>T	p.Arg275Ter	p.R275*	ENST00000263923	NM_002253.2	275	Cga/Tga																																																																															
INHA	3623	MSKCC	GRCh37	2	220440168	220440168	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757864159		P-0060717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	254	655	0	ENST00000243786.2:c.1021C>T	p.Arg341Cys	p.R341C	ENST00000243786	NM_002191.3	341	Cgc/Tgc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624942	9624942	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	246	483	0	ENST00000353224.5:c.35C>A	p.Ser12Tyr	p.S12Y	ENST00000353224	NM_177990.2	12	tCt/tAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0060717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	149	347	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577414	64577418	+	frameshift_variant	Frame_Shift_Del	DEL	GGTAG	GGTAG	-			P-0060717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1002	207	727	0	ENST00000337652.1:c.164_168del	p.Pro55GlnfsTer60	p.P55Qfs*60	ENST00000337652	NM_130803.2	55	cCTACC/c																																																																															
CASP8	841	MSKCC	GRCh37	2	202149743	202149754	+	inframe_deletion	In_Frame_Del	DEL	TGACATCTCAGT	TGACATCTCAGT	-			P-0060717-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			846	116	702	0	ENST00000358485.4:c.1185_1196del	p.Ser397_Thr400del	p.S397_T400del	ENST00000358485	NM_001080125.1	395	cTGACATCTCAGTtc/ctc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0060172-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			349	215	554	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0060172-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			329	510	422	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028880	47028880	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0060172-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			607	468	702	0	ENST00000329236.7:c.184G>T	p.Glu62Ter	p.E62*	ENST00000329236	NM_001204466.1	62	Gag/Tag																																																																															
CCND1	595	MSKCC	GRCh37	11	69456169	69456169	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs2220247		P-0060172-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			3329	287	765	0	ENST00000227507.2:c.88G>A	p.Ala30Thr	p.A30T	ENST00000227507	NM_053056.2	30	Gcc/Acc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831694	72831714	+	inframe_deletion	In_Frame_Del	DEL	CAGCTTGGCTGCCCGGGCCTT	CAGCTTGGCTGCCCGGGCCTT	-			P-0060172-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			658	238	710	0	ENST00000268489.5:c.4867_4887del	p.Lys1623_Leu1629del	p.K1623_L1629del	ENST00000268489	NM_006885.3	1623	AAGGCCCGGGCAGCCAAGCTG/-																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47606909	47606909	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0060172-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			607	172	396	0	ENST00000263735.4:c.659T>C	p.Val220Ala	p.V220A	ENST00000263735	NM_002354.2	220	gTt/gCt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541363	187541363	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060172-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			687	239	687	0	ENST00000441802.2:c.6377A>C	p.His2126Pro	p.H2126P	ENST00000441802	NM_005245.3	2126	cAc/cCc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419932	152419932	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001504-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			521	44	548	0	ENST00000206249.3:c.1619T>A	p.Leu540Gln	p.L540Q	ENST00000206249	NM_000125.3	540	cTg/cAg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67196056	67196056	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1334740541		P-0001504-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1249	102	574	0	ENST00000312629.5:c.40G>A	p.Gly14Ser	p.G14S	ENST00000312629	NM_003952.2	14	Ggc/Agc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0001939-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			330	93	215	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
TET2	54790	MSKCC	GRCh37	4	106193995	106193995	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs1376289450		P-0001939-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			944	86	344	0	ENST00000380013.4:c.4457C>G	p.Ser1486Ter	p.S1486*	ENST00000380013	NM_001127208.2	1486	tCa/tGa																																																																															
GNA11	2767	MSKCC	GRCh37	19	3121074	3121074	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0001939-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1141	174	532	0	ENST00000078429.4:c.977C>G	p.Ser326Ter	p.S326*	ENST00000078429	NM_002067.2	326	tCa/tGa																																																																															
AKT2	208	MSKCC	GRCh37	19	40739804	40739804	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001939-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			815	176	402	0	ENST00000392038.2:c.1421C>G	p.Ser474Cys	p.S474C	ENST00000392038	NM_001626.4	474	tCc/tGc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40979361	40979361	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001939-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			715	87	221	0	ENST00000373198.4:c.1772T>A	p.Met591Lys	p.M591K	ENST00000373198	NM_133170.3	591	aTg/aAg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0003166-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			610	181	329	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
NF1	4763	MSKCC	GRCh37	17	29679366	29679366	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs866445127		P-0003166-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			634	169	446	0	ENST00000358273.4:c.7549C>T	p.Arg2517Ter	p.R2517*	ENST00000358273	NM_001042492.2	2517	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004322-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	26	515	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0004322-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	25	645	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419986	41419986	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372989163		P-0004697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	578	967	0	ENST00000373198.4:c.335G>A	p.Arg112His	p.R112H	ENST00000373198	NM_133170.3	112	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	278	940	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0004697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	571	1073	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0004697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	196	937	0	ENST00000257430.4:c.4391_4394del	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																															
HGF	3082	MSKCC	GRCh37	7	81381529	81381529	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	469	1086	0	ENST00000222390.5:c.532C>T	p.Arg178Ter	p.R178*	ENST00000222390	NM_000601.4	178	Cga/Tga																																																																															
MGA	23269	MSKCC	GRCh37	15	42052629	42052629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	476	1247	1	ENST00000219905.7:c.7300C>T	p.Arg2434Trp	p.R2434W	ENST00000219905	NM_001164273.1	2434	Cgg/Tgg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131418	17131418	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751171641		P-0004697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	310	642	0	ENST00000285071.4:c.34G>A	p.Glu12Lys	p.E12K	ENST00000285071	NM_144997.5	12	Gag/Aag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593505	48593505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	274	573	1	ENST00000342988.3:c.1256G>T	p.Gly419Val	p.G419V	ENST00000342988	NM_005359.5	419	gGg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112173639	112173652	+	frameshift_variant	Frame_Shift_Del	DEL	CATCTCATCGTAGT	CATCTCATCGTAGT	-			P-0004697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	306	837	0	ENST00000257430.4:c.2348_2361del	p.Ala783GlufsTer11	p.A783Efs*11	ENST00000257430	NM_000038.5	783	gCATCTCATCGTAGT/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0005132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	183	509	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0005132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	258	381	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
NBN	4683	MSKCC	GRCh37	8	90949272	90949272	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	382	398	0	ENST00000265433.3:c.2216T>C	p.Leu739Pro	p.L739P	ENST00000265433	NM_002485.4	739	cTt/cCt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479829	67479829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	343	507	0	ENST00000327367.4:c.1136G>A	p.Gly379Asp	p.G379D	ENST00000327367	NM_005902.3	379	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs786201057		P-0005132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	170	425	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	110	374	1	ENST00000342988.3:c.1255G>T	p.Gly419Trp	p.G419W	ENST00000342988	NM_005359.5	419	Ggg/Tgg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426120	47426120	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	390	266	0	ENST00000377045.4:c.640T>C	p.Ser214Pro	p.S214P	ENST00000377045	NM_001654.4	214	Tcc/Ccc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225370815	225370815	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	233	227	0	ENST00000264414.4:c.1064T>C	p.Phe355Ser	p.F355S	ENST00000264414	NM_003590.4	355	tTc/tCc																																																																															
CBL	867	MSKCC	GRCh37	11	119170363	119170363	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	59	262	0	ENST00000264033.4:c.2593A>G	p.Met865Val	p.M865V	ENST00000264033	NM_005188.3	865	Atg/Gtg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720779	89720780	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	23	66	0	ENST00000371953.3:c.932dup	p.Asn311LysfsTer2	p.N311Kfs*2	ENST00000371953	NM_000314.4	310	-/A																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0008027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	158	202	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73775025	73775025	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	33	203	0	ENST00000254810.4:c.148C>T	p.Arg50Ter	p.R50*	ENST00000254810	NM_005324.3	50	Cga/Tga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061213	38061213	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	55	228	0	ENST00000250448.2:c.776A>G	p.Tyr259Cys	p.Y259C	ENST00000250448	NM_004496.3	259	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	119	550	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
XIAP	331	MSKCC	GRCh37	X	123020377	123020377	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	50	374	0	ENST00000355640.3:c.865T>C	p.Phe289Leu	p.F289L	ENST00000355640		289	Ttt/Ctt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576916	7576917	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	50	478	0	ENST00000269305.4:c.929_930insG	p.Asn310LysfsTer27	p.N310Kfs*27	ENST00000269305	NM_001126112.2	310	aac/aaGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	75	499	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0008527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	97	415	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647056	23647056	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	82	595	0	ENST00000261584.4:c.811A>C	p.Ser271Arg	p.S271R	ENST00000261584	NM_024675.3	271	Agt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971202	21971203	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	27	107	0	ENST00000304494.5:c.155dup	p.Met52IlefsTer68	p.M52Ifs*68	ENST00000304494	NM_000077.4	52	atg/atTg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	515	205	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056026	26056026	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs928708568		P-0008574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	363	135	0	ENST00000343677.2:c.631A>C	p.Lys211Gln	p.K211Q	ENST00000343677	NM_005319.3	211	Aag/Cag																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87325595	87325595	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	41	394	0	ENST00000277120.3:c.472T>C	p.Trp158Arg	p.W158R	ENST00000277120		158	Tgg/Cgg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609685	81609685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	392	504	0	ENST00000298171.2:c.1283C>T	p.Ala428Val	p.A428V	ENST00000298171	NM_000369.2	428	gCt/gTt																																																																															
REL	5966	MSKCC	GRCh37	2	61118833	61118833	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs868755436		P-0012008-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	233	210	0	ENST00000295025.8:c.26A>G	p.Tyr9Cys	p.Y9C	ENST00000295025	NM_002908.2	9	tAt/tGt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295195	1295195	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0012008-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	35	94	0				ENST00000310581	NM_198253.2																																																																																	
DNMT1	1786	MSKCC	GRCh37	19	10267166	10267166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012008-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	116	263	0	ENST00000340748.4:c.1252C>T	p.His418Tyr	p.H418Y	ENST00000340748		418	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519992		P-0012114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	50	693	1	ENST00000269305.4:c.641A>T	p.His214Leu	p.H214L	ENST00000269305	NM_001126112.2	214	cAt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0012757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	77	378	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
CCND3	896	MSKCC	GRCh37	6	41909306	41909327	+	frameshift_variant	Frame_Shift_Del	DEL	GGACACGCTGGTCCCCCAGCAG	GGACACGCTGGTCCCCCAGCAG	-			P-0012757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	62	314	0	ENST00000372991.4:c.61_82del	p.Leu21CysfsTer55	p.L21Cfs*55	ENST00000372991	NM_001760.3	21	CTGCTGGGGGACCAGCGTGTCCtg/tg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	216	368	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971053	21971053	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137854598		P-0014490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	155	326	0	ENST00000304494.5:c.305C>T	p.Ala102Val	p.A102V	ENST00000304494	NM_000077.4	102	gCg/gTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68862159	68862163	+	frameshift_variant	Frame_Shift_Del	DEL	GGACA	GGACA	-			P-0014490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	184	384	0	ENST00000261769.5:c.2247_2251del	p.Asp750ArgfsTer5	p.D750Rfs*5	ENST00000261769	NM_004360.3	749	cgGGACAac/cgac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	62	854	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104893810		P-0017171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	28	390	0	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs775623976		P-0017171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	25	538	0	ENST00000335508.6:c.1873C>G	p.Arg625Gly	p.R625G	ENST00000335508	NM_012433.2	625	Cgt/Ggt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448393	56448393	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0017171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	67	709	0	ENST00000407977.2:c.254C>T	p.Ser85Phe	p.S85F	ENST00000407977		85	tCc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	368	527	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0017934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	51	561	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0017934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	41	744	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0017934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	316	481	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0017934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	444	504	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	23	502	1	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112175438	112175439	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0017934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	139	267	0	ENST00000257430.4:c.4147_4148del	p.Met1383ValfsTer2	p.M1383Vfs*2	ENST00000257430	NM_000038.5	1383	ATg/g																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023447	27023447	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	335	547	1	ENST00000324856.7:c.553C>T	p.Gln185Ter	p.Q185*	ENST00000324856	NM_006015.4	185	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577519	7577519	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	131	531	0	ENST00000269305.4:c.762del	p.Ile255SerfsTer90	p.I255Sfs*90	ENST00000269305	NM_001126112.2	254	atC/at																																																																															
APC	324	MSKCC	GRCh37	5	112155042	112155042	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0017934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	228	326	0	ENST00000257430.4:c.1312+1G>T		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151871297	151871297	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	661	469	0	ENST00000262189.6:c.9293A>C	p.Lys3098Thr	p.K3098T	ENST00000262189	NM_170606.2	3098	aAa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0018293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	168	547	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	168	489	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101608	27101609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGC			P-0018293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	129	536	0	ENST00000324856.7:c.4892_4895dup	p.Pro1633AlafsTer16	p.P1633Afs*16	ENST00000324856	NM_006015.4	1630	-/CAGC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575169	48575169	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	51	206	1	ENST00000342988.3:c.366del	p.Lys122AsnfsTer7	p.K122Nfs*7	ENST00000342988	NM_005359.5	121	ttA/tt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94068123	94068123	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778426683		P-0018293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	56	253	0	ENST00000369303.4:c.839G>A	p.Gly280Asp	p.G280D	ENST00000369303	NM_004440.3	280	gGc/gAc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681074	117681077	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-	rs779372215		P-0018293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	113	422	0	ENST00000368508.3:c.3543_3546del	p.Arg1182LeufsTer60	p.R1182Lfs*60	ENST00000368508	NM_002944.2	1181	gaAAGA/ga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971089	21971089	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	104	338	0	ENST00000304494.5:c.269del	p.Phe90SerfsTer56	p.F90Sfs*56	ENST00000304494	NM_000077.4	90	tTc/tc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0020771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	254	607	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0020771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	519	970	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
MGA	23269	MSKCC	GRCh37	15	42052632	42052632	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779811318		P-0020771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	178	675	0	ENST00000219905.7:c.7303C>T	p.Arg2435Trp	p.R2435W	ENST00000219905	NM_001164273.1	2435	Cgg/Tgg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609732	81609732	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs754118014		P-0020771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	271	632	2	ENST00000298171.2:c.1330T>C	p.Tyr444His	p.Y444H	ENST00000298171	NM_000369.2	444	Tac/Cac																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435634	149435634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	95	848	0	ENST00000286301.3:c.2509G>A	p.Asp837Asn	p.D837N	ENST00000286301	NM_005211.3	837	Gac/Aac																																																																															
KDR	3791	MSKCC	GRCh37	4	55961055	55961055	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1229432573		P-0020771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	56	1013	1	ENST00000263923.4:c.2885G>A	p.Arg962His	p.R962H	ENST00000263923	NM_002253.2	962	cGc/cAc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36945037	36945037	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200059719		P-0020771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	430	911	2	ENST00000361632.4:c.61G>A	p.Gly21Arg	p.G21R	ENST00000361632		21	Gga/Aga																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374942	45374942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	321	702	1	ENST00000262160.6:c.901G>T	p.Gly301Cys	p.G301C	ENST00000262160	NM_005901.5	301	Ggc/Tgc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138456596	138456596	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774144681		P-0020771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	238	749	0	ENST00000289153.2:c.754G>A	p.Gly252Arg	p.G252R	ENST00000289153	NM_006219.2	252	Ggg/Agg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69002939	69002939	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773432628		P-0020771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	163	324	0	ENST00000288368.4:c.2239C>T	p.Arg747Trp	p.R747W	ENST00000288368	NM_024870.2	747	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0023248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	97	772	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	42	421	0	ENST00000342988.3:c.1255G>C	p.Gly419Arg	p.G419R	ENST00000342988	NM_005359.5	419	Ggg/Cgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	74	530	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0024429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	94	593	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	41	367	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0024429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	137	787	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
YAP1	10413	MSKCC	GRCh37	11	102094419	102094420	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTCCCG			P-0024429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	72	562	0	ENST00000282441.5:c.1100_1105dup	p.Pro368_Gly369insAlaPro	p.P368_G369insAP	ENST00000282441	NM_001130145.2	367	tct/tCTCCCGct																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562489	21562489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	13	116	0	ENST00000382592.4:c.1430C>T	p.Pro477Leu	p.P477L	ENST00000382592	NM_014572.2	477	cCc/cTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161274	56161274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	45	345	0	ENST00000399503.3:c.1143G>T	p.Lys381Asn	p.K381N	ENST00000399503	NM_005921.1	381	aaG/aaT																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191536	185191536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	60	583	1	ENST00000265026.3:c.2417G>T	p.Arg806Met	p.R806M	ENST00000265026	NM_004721.4	806	aGg/aTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044496	47044496	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	52	686	0	ENST00000329236.7:c.1759C>G	p.Gln587Glu	p.Q587E	ENST00000329236	NM_001204466.1	587	Caa/Gaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	68	215	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175539	112175539	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	29	138	0	ENST00000257430.4:c.4248del	p.Ile1417LeufsTer2	p.I1417Lfs*2	ENST00000257430	NM_000038.5	1416	ggC/gg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0026307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	53	250	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	99	193	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788618	3788618	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs398124146		P-0026307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	69	238	0	ENST00000262367.5:c.4336C>T	p.Arg1446Cys	p.R1446C	ENST00000262367	NM_004380.2	1446	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112174384	112174384	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0026307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	21	113	0	ENST00000257430.4:c.3093T>A	p.Tyr1031Ter	p.Y1031*	ENST00000257430	NM_000038.5	1031	taT/taA																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171611	36171615	+	frameshift_variant	Frame_Shift_Del	DEL	GGAAA	GGAAA	-			P-0026307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	51	133	0	ENST00000300305.3:c.950_954del	p.Leu317GlnfsTer281	p.L317Qfs*281	ENST00000300305		317	cTTTCC/c																																																																															
SDHA	6389	MSKCC	GRCh37	5	235345	235345	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs151170408		P-0026307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	30	336	0	ENST00000264932.6:c.1151C>G	p.Ser384Ter	p.S384*	ENST00000264932	NM_004168.2	384	tCa/tGa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591118	67591126	+	inframe_deletion	In_Frame_Del	DEL	ATCCAGCTG	ATCCAGCTG	-			P-0026307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	47	152	0	ENST00000274335.5:c.1712_1720del	p.Ile571_Leu573del	p.I571_L573del	ENST00000274335		571	ATCCAGCTG/-																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981202	201981202	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750329636		P-0026455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	104	837	1	ENST00000359651.3:c.281G>A	p.Arg94Gln	p.R94Q	ENST00000359651		94	cGa/cAa																																																																															
B2M	567	MSKCC	GRCh37	15	45007666	45007666	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1191507697		P-0026455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	73	430	1	ENST00000558401.1:c.113G>A	p.Gly38Glu	p.G38E	ENST00000558401	NM_004048.2	38	gGa/gAa																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2093576	2093576	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3211977		P-0026455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	153	666	1	ENST00000219066.1:c.701C>T	p.Ser234Leu	p.S234L	ENST00000219066	NM_002528.5	234	tCa/tTa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185190871	185190871	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0026455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	202	783	0	ENST00000265026.3:c.1752T>A	p.Tyr584Ter	p.Y584*	ENST00000265026	NM_004721.4	584	taT/taA																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205073	38205073	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0026455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	105	817	0	ENST00000317025.8:c.617C>G	p.Ser206Ter	p.S206*	ENST00000317025	NM_023034.1	206	tCa/tGa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117862871	117862871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	122	624	0	ENST00000297338.2:c.1606G>A	p.Asp536Asn	p.D536N	ENST00000297338	NM_006265.2	536	Gat/Aat																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016634	12016634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026605-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			178	61	477	0	ENST00000353533.5:c.770C>T	p.Ser257Phe	p.S257F	ENST00000353533	NM_003010.3	257	tCt/tTt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467502	25467502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026605-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			523	73	749	1	ENST00000264709.3:c.1574C>T	p.Ala525Val	p.A525V	ENST00000264709	NM_175629.2	525	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	74	451	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0028084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	65	564	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95577788	95577788	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	21	216	0	ENST00000343455.3:c.2122C>G	p.Leu708Val	p.L708V	ENST00000343455	NM_177438.2	708	Ctg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	350	535	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0031206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	501	691	6	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175876	112175876	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	245	350	0	ENST00000257430.4:c.4585C>T	p.Gln1529Ter	p.Q1529*	ENST00000257430	NM_000038.5	1529	Cag/Tag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411411	63411411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	474	628	0	ENST00000330258.3:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000330258	NM_152424.3	586	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118372555	118372555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	413	561	3	ENST00000534358.1:c.6488G>A	p.Arg2163Gln	p.R2163Q	ENST00000534358	NM_005933.3	2163	cGa/cAa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67662323	67662323	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	600	575	0	ENST00000264010.4:c.1569C>G	p.Tyr523Ter	p.Y523*	ENST00000264010	NM_006565.3	523	taC/taG																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209298	98209298	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149667902		P-0031206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	511	696	1	ENST00000331920.6:c.4240G>A	p.Val1414Met	p.V1414M	ENST00000331920	NM_000264.3	1414	Gtg/Atg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0031226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	154	884	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155725	56155726	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0031226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	165	912	0	ENST00000399503.3:c.819_820del	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	273	AGa/a																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	226	1227	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179381	56179381	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	96	530	0	ENST00000399503.3:c.3696del	p.Ala1233GlnfsTer12	p.A1233Qfs*12	ENST00000399503	NM_005921.1	1232	Aaa/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0031818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	67	649	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TET1	80312	MSKCC	GRCh37	10	70450909	70450909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	89	524	0	ENST00000373644.4:c.5749G>T	p.Val1917Leu	p.V1917L	ENST00000373644	NM_030625.2	1917	Gtg/Ttg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061241	38061244	+	frameshift_variant	Frame_Shift_Del	DEL	AGTC	AGTC	-			P-0032256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	144	589	0	ENST00000250448.2:c.745_748del	p.Asp249ProfsTer71	p.D249Pfs*71	ENST00000250448	NM_004496.3	249	GACTcc/cc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138478157	138478157	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	86	369	0	ENST00000289153.2:c.29C>G	p.Ala10Gly	p.A10G	ENST00000289153	NM_006219.2	10	gCt/gGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859392	151859393	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0032256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	113	419	0	ENST00000262189.6:c.11269_11270del	p.Gln3757GlufsTer18	p.Q3757Efs*18	ENST00000262189	NM_170606.2	3757	CAg/g																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781328	135781328	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	43	578	0	ENST00000298552.3:c.1637A>C	p.Asp546Ala	p.D546A	ENST00000298552	NM_001162426.1	546	gAc/gCc																																																																															
ATM	472	MSKCC	GRCh37	11	108124723	108124738	+	protein_altering_variant	In_Frame_Del	DEL	TTCTGGGATTATCAGA	TTCTGGGATTATCAGA	C			P-0032256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	83	383	0	ENST00000278616.4:c.2081_2096delinsC	p.Leu694_Glu699delinsPro	p.L694_E699delinsP	ENST00000278616	NM_000051.3	694	cTTCTGGGATTATCAGAa/cCa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458372	120458372	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033695-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			277	613	558	0	ENST00000256646.2:c.6973C>T	p.Gln2325Ter	p.Q2325*	ENST00000256646	NM_024408.3	2325	Cag/Tag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850925	63850925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033695-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			236	110	478	0	ENST00000279873.7:c.1703G>A	p.Ser568Asn	p.S568N	ENST00000279873	NM_032199.2	568	aGt/aAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578466	7578466	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs786202752		P-0033695-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			207	328	836	0	ENST00000269305.4:c.464C>A	p.Thr155Asn	p.T155N	ENST00000269305	NM_001126112.2	155	aCc/aAc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47643516	47643516	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033695-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			448	126	580	0	ENST00000233146.2:c.1024G>T	p.Val342Phe	p.V342F	ENST00000233146	NM_000251.2	342	Gtt/Ttt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437822	52437822	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033695-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			216	195	827	0	ENST00000460680.1:c.1339del	p.Val447SerfsTer124	p.V447Sfs*124	ENST00000460680	NM_004656.3	447	Gtc/tc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517762	176517762	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033695-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			474	97	697	0	ENST00000292408.4:c.372C>A	p.Ser124Arg	p.S124R	ENST00000292408	NM_213647.1	124	agC/agA																																																																															
TSC1	7248	MSKCC	GRCh37	9	135801006	135801007	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0033695-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			232	52	389	0	ENST00000298552.3:c.330_331del	p.Pro111SerfsTer14	p.P111Sfs*14	ENST00000298552	NM_001162426.1	110	gcACct/gcct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0034268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	161	234	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0034274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	78	418	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0034274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	101	584	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
BTK	695	MSKCC	GRCh37	X	100611203	100611203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	43	529	0	ENST00000308731.7:c.1403G>A	p.Arg468His	p.R468H	ENST00000308731	NM_000061.2	468	cGc/cAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868196	37868196	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1308928763		P-0034274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	108	527	2	ENST00000269571.5:c.917C>T	p.Thr306Met	p.T306M	ENST00000269571		306	aCg/aTg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856250	111856250	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1246649893		P-0034274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	26	129	0	ENST00000341259.2:c.301G>A	p.Glu101Lys	p.E101K	ENST00000341259	NM_005475.2	101	Gag/Aag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265687	41266331	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAA	TTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAA	-			P-0034274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	59	150	0	ENST00000349496.5:c.13+116_241+88del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	472	556	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577525	7577527	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0034324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	292	850	0	ENST00000269305.4:c.754_756del	p.Leu252del	p.L252del	ENST00000269305	NM_001126112.2	252	CTC/-																																																																															
CDH1	999	MSKCC	GRCh37	16	68845682	68845682	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	106	596	1	ENST00000261769.5:c.928G>T	p.Glu310Ter	p.E310*	ENST00000261769	NM_004360.3	310	Gag/Tag																																																																															
CDH1	999	MSKCC	GRCh37	16	68847225	68847226	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0035380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	19	439	0	ENST00000261769.5:c.1147_1148del	p.Gln383GlyfsTer3	p.Q383Gfs*3	ENST00000261769	NM_004360.3	383	CAg/g																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459698	149459698	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	81	711	0	ENST00000286301.3:c.509T>A	p.Ile170Asn	p.I170N	ENST00000286301	NM_005211.3	170	aTt/aAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259433	55259433	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371228501		P-0035380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	21	379	0	ENST00000275493.2:c.2491C>T	p.Arg831Cys	p.R831C	ENST00000275493	NM_005228.3	831	Cgt/Tgt																																																																															
MET	4233	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0035825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	419	612	0	ENST00000397752.3:c.3028+2T>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
RFWD2	64326	MSKCC	GRCh37	1	175956185	175956185	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	38	352	0	ENST00000367669.3:c.2027T>A	p.Leu676Gln	p.L676Q	ENST00000367669	NM_022457.5	676	cTa/cAa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974856	15974856	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	64	494	0	ENST00000268712.3:c.4019G>T	p.Gly1340Val	p.G1340V	ENST00000268712	NM_006311.3	1340	gGc/gTc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095917	178095917	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	51	496	0	ENST00000397062.3:c.1414A>G	p.Lys472Glu	p.K472E	ENST00000397062	NM_006164.4	472	Aaa/Gaa																																																																															
BARD1	580	MSKCC	GRCh37	2	215595178	215595184	+	frameshift_variant	Frame_Shift_Del	DEL	ATTTCAT	ATTTCAT	-			P-0035825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	40	407	0	ENST00000260947.4:c.1952_1958del	p.Tyr651PhefsTer61	p.Y651Ffs*61	ENST00000260947	NM_000465.2	651	tATGAAATt/tt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080581	5080581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	52	337	0	ENST00000381652.3:c.2332G>T	p.Ala778Ser	p.A778S	ENST00000381652	NM_004972.3	778	Gca/Tca																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589808	28589808	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	42	444	0	ENST00000241453.7:c.2572G>C	p.Glu858Gln	p.E858Q	ENST00000241453	NM_004119.2	858	Gaa/Caa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589804	28589805	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	40	440	0	ENST00000241453.7:c.2575dup	p.Ser859LysfsTer4	p.S859Kfs*4	ENST00000241453	NM_004119.2	859	agc/aAgc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941314	71941314	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0036092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	177	625	0	ENST00000298229.2:c.1089del	p.Ile364SerfsTer48	p.I364Sfs*48	ENST00000298229	NM_001567.3	363	cgC/cg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999558	100999558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	300	930	1	ENST00000325455.5:c.244G>A	p.Asp82Asn	p.D82N	ENST00000325455	NM_001202474.3	82	Gac/Aac																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138433446	138433446	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	110	523	0	ENST00000289153.2:c.1166T>C	p.Ile389Thr	p.I389T	ENST00000289153	NM_006219.2	389	aTt/aCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0036225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	106	573	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
SMO	6608	MSKCC	GRCh37	7	128850951	128850951	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs767352128		P-0036225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	69	479	0	ENST00000249373.3:c.1798G>T	p.Val600Leu	p.V600L	ENST00000249373	NM_005631.4	600	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1060501195		P-0036225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	125	731	0	ENST00000269305.4:c.313G>C	p.Gly105Arg	p.G105R	ENST00000269305	NM_001126112.2	105	Ggc/Cgc																																																																															
KDR	3791	MSKCC	GRCh37	4	55961005	55961005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	43	533	0	ENST00000263923.4:c.2935G>A	p.Glu979Lys	p.E979K	ENST00000263923	NM_002253.2	979	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100850	27100850	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	39	547	0	ENST00000324856.7:c.4133del	p.Gly1378AlafsTer103	p.G1378Afs*103	ENST00000324856	NM_006015.4	1378	Ggc/gc																																																																															
POLE	5426	MSKCC	GRCh37	12	133202743	133202743	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	55	535	0	ENST00000320574.5:c.6491G>T	p.Cys2164Phe	p.C2164F	ENST00000320574	NM_006231.2	2164	tGc/tTc																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73775179	73775180	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0036225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	115	539	0	ENST00000254810.4:c.76_77delinsTT	p.Ala26Phe	p.A26F	ENST00000254810	NM_005324.3	26	GCc/TTc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264761	46264761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	148	510	1	ENST00000371998.3:c.1631C>T	p.Pro544Leu	p.P544L	ENST00000371998		544	cCa/cTa																																																																															
VHL	7428	MSKCC	GRCh37	3	10183697	10183697	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	59	479	0	ENST00000256474.2:c.166G>T	p.Ala56Ser	p.A56S	ENST00000256474	NM_000551.3	56	Gcc/Tcc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965658	93965658	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	74	503	1	ENST00000369303.4:c.2270G>T	p.Arg757Met	p.R757M	ENST00000369303	NM_004440.3	757	aGg/aTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545731	106545731	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	117	621	0	ENST00000359195.3:c.3208G>C	p.Asp1070His	p.D1070H	ENST00000359195	NM_002649.2	1070	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	680	593	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998292	100998292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	17	58	0	ENST00000325455.5:c.1510G>A	p.Ala504Thr	p.A504T	ENST00000325455	NM_001202474.3	504	Gcc/Acc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681706	30681706	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56118863		P-0036252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	586	451	2	ENST00000376406.3:c.391C>T	p.His131Tyr	p.H131Y	ENST00000376406	NM_014641.2	131	Cat/Tat																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729858	41729858	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	157	490	0	ENST00000242208.4:c.671C>G	p.Ser224Cys	p.S224C	ENST00000242208	NM_002192.2	224	tCc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0036619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	29	628	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0036619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	28	605	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0036619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	13	252	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112175223	112175223	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	24	195	0	ENST00000257430.4:c.3933del	p.Ile1311MetfsTer10	p.I1311Mfs*10	ENST00000257430	NM_000038.5	1311	aTt/at																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106366	27106383	+	inframe_deletion	In_Frame_Del	DEL	TTTGTGCCAGGCAATGAC	TTTGTGCCAGGCAATGAC	-			P-0036619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	28	493	1	ENST00000324856.7:c.5981_5998del	p.Val1994_Phe1999del	p.V1994_F1999del	ENST00000324856	NM_006015.4	1993	TTTGTGCCAGGCAATGAC/-																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0037021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	51	482	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99192856	99192856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	75	322	0	ENST00000268035.6:c.46C>T	p.Leu16Phe	p.L16F	ENST00000268035	NM_000875.3	16	Ctc/Ttc																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804154	46804154	+	stop_lost	Nonstop_Mutation	SNP	A	A	C			P-0037021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	56	619	0	ENST00000290295.7:c.853T>G	p.Ter285GluextTer32	p.*285Eext*32	ENST00000290295	NM_006361.5	285	Taa/Gaa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922961	44923000	+	frameshift_variant	Frame_Shift_Del	DEL	CCTTACCTGCAGCGAAACGCACTCACTCTACCTCATAACC	CCTTACCTGCAGCGAAACGCACTCACTCTACCTCATAACC	-			P-0037021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	68	299	0	ENST00000377967.4:c.1822_1861del	p.Pro608AlafsTer4	p.P608Afs*4	ENST00000377967	NM_021140.2	608	CCTTACCTGCAGCGAAACGCACTCACTCTACCTCATAACCgc/gc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	72	380	0	ENST00000346208.3:c.1003dup	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0037088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	92	546	0	ENST00000269305.4:c.376T>C	p.Tyr126His	p.Y126H	ENST00000269305	NM_001126112.2	126	Tac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0037115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	96	682	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0037115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	68	321	1	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770587	40770587	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776338672		P-0037115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	790	509	0	ENST00000373198.4:c.2795G>A	p.Arg932His	p.R932H	ENST00000373198	NM_133170.3	932	cGc/cAc																																																																															
AR	367	MSKCC	GRCh37	X	66766357	66766386	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	-	rs1420942076		P-0037115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	25	163	1	ENST00000374690.3:c.1391_1420del	p.Gly464_Gly473del	p.G464_G473del	ENST00000374690	NM_000044.3	457	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGC/-																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741406	17741406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs993043194		P-0037115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	246	930	2	ENST00000250003.3:c.77C>T	p.Thr26Met	p.T26M	ENST00000250003	NM_002478.4	26	aCg/aTg																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123480589	123480589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	80	584	0	ENST00000371139.4:c.97G>A	p.Asp33Asn	p.D33N	ENST00000371139	NM_001114937.2	33	Gac/Aac																																																																															
APC	324	MSKCC	GRCh37	5	112154999	112154999	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	81	527	0	ENST00000257430.4:c.1270C>T	p.Gln424Ter	p.Q424*	ENST00000257430	NM_000038.5	424	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874188	151874194	+	frameshift_variant	Frame_Shift_Del	DEL	TATCATC	TATCATC	-			P-0037115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	84	565	0	ENST00000262189.6:c.8344_8350del	p.Asp2782SerfsTer2	p.D2782Sfs*2	ENST00000262189	NM_170606.2	2782	GATGATAag/ag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913558	32913559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1265028174		P-0037151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	49	262	1	ENST00000380152.3:c.5073dup	p.Trp1692MetfsTer3	p.W1692Mfs*3	ENST00000380152		1689	gca/gcAa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464402	120464402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	95	408	0	ENST00000256646.2:c.5244C>G	p.Asn1748Lys	p.N1748K	ENST00000256646	NM_024408.3	1748	aaC/aaG																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717948	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAAAAGGTTTGTACTTTACTTTCATTGGGAGAAATATCCAAAATAAGGACAGATTAAAAGCTATATTTTATTTTATGACATGTAAGGAACTATAATTTGTTTTCTATTAGATCTGCAGGTGTTTTGCTTACTCTGGCATTGGTGAGACATTATAAGGGTAAATAATCCTGTTTGAAGG	AAAAAAGGTTTGTACTTTACTTTCATTGGGAGAAATATCCAAAATAAGGACAGATTAAAAGCTATATTTTATTTTATGACATGTAAGGAACTATAATTTGTTTTCTATTAGATCTGCAGGTGTTTTGCTTACTCTGGCATTGGTGAGACATTATAAGGGTAAATAATCCTGTTTGAAGG	-			P-0037151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	14	219	0	ENST00000371953.3:c.799_801+176del		p.X267_splice	ENST00000371953	NM_000314.4	267																																																																																
ATM	472	MSKCC	GRCh37	11	108173748	108173793	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATGTGTGAAGTAAGAAGATTAATTAGTCTGATATAATTCCTTGTTT	ATGTGTGAAGTAAGAAGATTAATTAGTCTGATATAATTCCTTGTTT	-			P-0037151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	33	203	0	ENST00000278616.4:c.5491_5496+40del		p.X1831_splice	ENST00000278616	NM_000051.3	1831																																																																																
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0037177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	454	821	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94918505	94918505	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	167	552	0	ENST00000536441.1:c.677T>G	p.Leu226Arg	p.L226R	ENST00000536441	NM_144665.3	226	cTa/cGa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061274	38061274	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	501	713	0	ENST00000250448.2:c.715G>C	p.Gly239Arg	p.G239R	ENST00000250448	NM_004496.3	239	Ggc/Cgc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56878477	56878477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	135	433	0	ENST00000308159.5:c.2416G>A	p.Asp806Asn	p.D806N	ENST00000308159	NM_014669.4	806	Gac/Aac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16049712	16049712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	152	533	0	ENST00000268712.3:c.1060G>A	p.Glu354Lys	p.E354K	ENST00000268712	NM_006311.3	354	Gaa/Aaa																																																																															
RRAS	6237	MSKCC	GRCh37	19	50143339	50143339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	27	71	0	ENST00000246792.3:c.17C>T	p.Ala6Val	p.A6V	ENST00000246792	NM_006270.3	6	gCg/gTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022712	31022713	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	G			P-0037177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	175	546	0	ENST00000375687.4:c.2197_2198delinsG	p.Gln733GlyfsTer11	p.Q733Gfs*11	ENST00000375687	NM_015338.5	733	CAg/Gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	44	570	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	44	644	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713886	30713886	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	39	606	0	ENST00000359013.4:c.1286T>G	p.Leu429Arg	p.L429R	ENST00000359013	NM_001024847.2	429	cTg/cGg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981135	201981135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	266	718	1	ENST00000359651.3:c.214G>T	p.Val72Phe	p.V72F	ENST00000359651		72	Gtt/Ttt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022522	12022522	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762232508		P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	204	627	1	ENST00000396373.4:c.628C>T	p.Arg210Cys	p.R210C	ENST00000396373	NM_001987.4	210	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	121	534	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434150	49434150	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	227	784	1	ENST00000301067.7:c.7403A>G	p.Lys2468Arg	p.K2468R	ENST00000301067	NM_003482.3	2468	aAg/aGg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482780	67482780	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	237	605	1	ENST00000327367.4:c.1184G>T	p.Trp395Leu	p.W395L	ENST00000327367	NM_005902.3	395	tGg/tTg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467796	99467796	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	107	395	0	ENST00000268035.6:c.2665G>T	p.Gly889Ter	p.G889*	ENST00000268035	NM_000875.3	889	Gga/Tga																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348830	11348830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	75	201	0	ENST00000332029.2:c.506G>A	p.Arg169His	p.R169H	ENST00000332029	NM_003745.1	169	cGc/cAc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30134499	30134499	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs955881745		P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	89	265	0	ENST00000263025.4:c.32G>T	p.Gly11Val	p.G11V	ENST00000263025	NM_002746.2	11	gGc/gTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993715	72993715	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	187	528	0	ENST00000268489.5:c.330G>T	p.Glu110Asp	p.E110D	ENST00000268489	NM_006885.3	110	gaG/gaT																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222151	2222151	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760542574		P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	297	860	0	ENST00000398665.3:c.2983C>T	p.Arg995Trp	p.R995W	ENST00000398665	NM_032482.2	995	Cgg/Tgg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17950353	17950353	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	249	762	0	ENST00000458235.1:c.1374G>C	p.Trp458Cys	p.W458C	ENST00000458235	NM_000215.3	458	tgG/tgC																																																																															
CIC	23152	MSKCC	GRCh37	19	42797206	42797206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	416	839	1	ENST00000575354.2:c.3568G>A	p.Gly1190Arg	p.G1190R	ENST00000575354	NM_015125.3	1190	Ggg/Agg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918165	50918165	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	210	845	0	ENST00000440232.2:c.2482G>C	p.Gly828Arg	p.G828R	ENST00000440232	NM_002691.3	828	Ggc/Cgc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31380550	31380550	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs770469129		P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	142	436	0	ENST00000328111.2:c.1040G>T	p.Gly347Val	p.G347V	ENST00000328111	NM_006892.3	347	gGc/gTc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62324258	62324258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1438	237	828	2	ENST00000508582.2:c.2825C>A	p.Ala942Asp	p.A942D	ENST00000508582		942	gCc/gAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161913	47161913	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	118	490	0	ENST00000409792.3:c.4213A>T	p.Lys1405Ter	p.K1405*	ENST00000409792	NM_014159.6	1405	Aaa/Taa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133466	55133466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	93	430	0	ENST00000257290.5:c.770G>A	p.Gly257Asp	p.G257D	ENST00000257290	NM_006206.4	257	gGc/gAc																																																																															
KIT	3815	MSKCC	GRCh37	4	55599234	55599234	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	31	422	0	ENST00000288135.5:c.2362-2A>G		p.X788_splice	ENST00000288135	NM_000222.2	788																																																																																
KDR	3791	MSKCC	GRCh37	4	55968597	55968597	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	216	686	0	ENST00000263923.4:c.2066C>G	p.Thr689Arg	p.T689R	ENST00000263923	NM_002253.2	689	aCg/aGg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532711	187532711	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768440012		P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	144	562	1	ENST00000441802.2:c.9682C>T	p.Pro3228Ser	p.P3228S	ENST00000441802	NM_005245.3	3228	Cct/Tct																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31405808	31405808	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	113	309	0	ENST00000344624.3:c.3970G>T	p.Ala1324Ser	p.A1324S	ENST00000344624		1324	Gca/Tca																																																																															
APC	324	MSKCC	GRCh37	5	112173801	112173801	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs79512956		P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	79	405	0	ENST00000257430.4:c.2510C>G	p.Ser837Ter	p.S837*	ENST00000257430	NM_000038.5	837	tCa/tGa																																																																															
APC	324	MSKCC	GRCh37	5	112175282	112175282	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	106	265	0	ENST00000257430.4:c.3991A>T	p.Arg1331Ter	p.R1331*	ENST00000257430	NM_000038.5	1331	Aga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046060	180046060	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	46	339	0	ENST00000261937.6:c.2811C>A	p.Asn937Lys	p.N937K	ENST00000261937	NM_182925.4	937	aaC/aaA																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046770	180046770	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	193	579	0	ENST00000261937.6:c.2543-1G>C		p.X848_splice	ENST00000261937	NM_182925.4	848																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32190349	32190349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	379	693	0	ENST00000375023.3:c.390G>T	p.Arg130Ser	p.R130S	ENST00000375023	NM_004557.3	130	agG/agT																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87339190	87339190	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200636057		P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	51	564	0	ENST00000277120.3:c.772G>A	p.Asp258Asn	p.D258N	ENST00000277120		258	Gat/Aat																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391964	139391964	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1022510242		P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	202	798	0	ENST00000277541.6:c.6227C>T	p.Thr2076Ile	p.T2076I	ENST00000277541	NM_017617.3	2076	aCc/aTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0037281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	109	411	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0037281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	181	714	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
CBFB	865	MSKCC	GRCh37	16	67063347	67063347	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	88	293	0	ENST00000412916.2:c.37G>T	p.Glu13Ter	p.E13*	ENST00000412916		13	Gag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0037281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	127	451	0	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
TNFAIP3	7128	MSKCC	GRCh37	6	138200297	138200297	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs556022420		P-0037281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	94	543	0	ENST00000237289.4:c.1715G>A	p.Arg572Gln	p.R572Q	ENST00000237289	NM_001270507.1	572	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0037300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	469	806	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0037300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	142	320	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	330	482	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871249	12871249	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0037300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	80	194	0	ENST00000228872.4:c.475+1G>A		p.X159_splice	ENST00000228872	NM_004064.3	159																																																																																
IKZF1	10320	MSKCC	GRCh37	7	50455118	50455118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200163039		P-0037300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	187	391	1	ENST00000331340.3:c.665G>A	p.Arg222His	p.R222H	ENST00000331340	NM_006060.4	222	cGc/cAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508683	106508683	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1490061702		P-0037300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	280	630	0	ENST00000359195.3:c.677G>A	p.Arg226His	p.R226H	ENST00000359195	NM_002649.2	226	cGc/cAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280809	41280832	+	stop_lost,inframe_deletion	Nonstop_Mutation	DEL	GGCCTGGTTTGATACTGACCTGTA	GGCCTGGTTTGATACTGACCTGTA	-			P-0037300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	31	527	0	ENST00000349496.5:c.2322_2345del	p.AlaTrpPheAspThrAspLeuTer775delextTer?	p.AWFDTDL*775delext*?	ENST00000349496	NM_001904.3	775	ctGGCCTGGTTTGATACTGACCTGTAa/cta																																																																															
TET2	54790	MSKCC	GRCh37	4	106196542	106196542	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	39	496	0	ENST00000380013.4:c.4875T>A	p.Asn1625Lys	p.N1625K	ENST00000380013	NM_001127208.2	1625	aaT/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0037302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	723	636	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539736	187539736	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1400631217		P-0037302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	111	458	0	ENST00000441802.2:c.8004C>A	p.Phe2668Leu	p.F2668L	ENST00000441802	NM_005245.3	2668	ttC/ttA																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572538	64572538	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	202	561	0	ENST00000337652.1:c.1333C>A	p.Leu445Ile	p.L445I	ENST00000337652	NM_130803.2	445	Ctt/Att																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533176	63533176	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1165490589		P-0037302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	209	659	0	ENST00000307078.5:c.1718G>A	p.Ser573Asn	p.S573N	ENST00000307078	NM_004655.3	573	aGc/aAc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444272	50444272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	70	289	0	ENST00000331340.3:c.202G>T	p.Gly68Trp	p.G68W	ENST00000331340	NM_006060.4	68	Ggg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247183	153247183	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	62	269	0	ENST00000281708.4:c.1619A>G	p.His540Arg	p.H540R	ENST00000281708	NM_033632.3	540	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112174835	112174835	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	60	246	2	ENST00000257430.4:c.3544A>T	p.Lys1182Ter	p.K1182*	ENST00000257430	NM_000038.5	1182	Aaa/Taa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67459188	67459188	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760091844		P-0037327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	79	464	0	ENST00000327367.4:c.604G>A	p.Ala202Thr	p.A202T	ENST00000327367	NM_005902.3	202	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7579529	7579530	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	142	746	0	ENST00000269305.4:c.157dup	p.Trp53LeufsTer4	p.W53Lfs*4	ENST00000269305	NM_001126112.2	53	tgg/tTgg																																																																															
MSH3	4437	MSKCC	GRCh37	5	80171584	80171584	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	38	417	0	ENST00000265081.6:c.3317A>G	p.Tyr1106Cys	p.Y1106C	ENST00000265081	NM_002439.4	1106	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	237	439	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0037331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	144	476	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575080	48575080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	111	318	0	ENST00000342988.3:c.274C>T	p.His92Tyr	p.H92Y	ENST00000342988	NM_005359.5	92	Cat/Tat																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472523	88472523	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1419472052		P-0037331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	165	511	0	ENST00000360948.2:c.2032C>T	p.Arg678Ter	p.R678*	ENST00000360948	NM_001012338.2	678	Cga/Tga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651532	52651532	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	133	473	0	ENST00000394830.3:c.1564C>T	p.Arg522Ter	p.R522*	ENST00000394830	NM_018313.4	522	Cga/Tga																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176330	24176330	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0037331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	225	543	0	ENST00000263121.7:c.1121G>C	p.Arg374Pro	p.R374P	ENST00000263121	NM_003073.3	374	cGg/cCg																																																																															
AXL	558	MSKCC	GRCh37	19	41727152	41727153	+	splice_donor_variant	Splice_Site	DNP	GT	GT	AA			P-0037331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	173	519	1	ENST00000301178.4:c.409+1_409+2delinsAA		p.X137_splice	ENST00000301178	NM_021913.4	137																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41408864	41408864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	101	293	0	ENST00000373198.4:c.562C>A	p.Pro188Thr	p.P188T	ENST00000373198	NM_133170.3	188	Cca/Aca																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589012	67589594	+	splice_donor_variant,splice_acceptor_variant,stop_lost,protein_altering_variant,intron_variant	Splice_Site	DEL	ATACTCTTACACTAAGGTAAGCCAGGGAATATAGCTGAAATTAGGGTTTTGGGCTGATATTAAAACATATTTCCTTATTCCAAAATGTTAATACCTTTATTTTTATATTGTTTTTACAGGAAAGGGGGAAATAACAAATTAATCAAAATATTTCATCGAGATGGGAAATATGGCTTCTCTGACCCATTAACCTTCAGTTCTGTGGTTGAATTAATAAACCACTACCGGAATGAATCTCTAGCTCAGTATAATCCCAAATTGGATGTGAAATTACTTTATCCAGTATCCAAATACCAACAGGTAATAAAAACTGAATGAATTATCCAGTTACGATGTTTAGACAAGATCCTTTTAATACTTAGAAAACATTTGAAGCAGATGAATTACATGTAATCAAGTCTAAAAAACTTGACACTCGTAATTACATAATTGCAATTTTAAAGATGTTTCCATGTCAGCTATTTTGTTAAACAATTGTTATTTGATTAAATACCTTATCCATTGAATTTATTTTAATCTTTCTAGGATCAAGTTGTCAAAGAAGATAATATTGAAGCTGTAGGGAAAAAATTACATGAATATA	ATACTCTTACACTAAGGTAAGCCAGGGAATATAGCTGAAATTAGGGTTTTGGGCTGATATTAAAACATATTTCCTTATTCCAAAATGTTAATACCTTTATTTTTATATTGTTTTTACAGGAAAGGGGGAAATAACAAATTAATCAAAATATTTCATCGAGATGGGAAATATGGCTTCTCTGACCCATTAACCTTCAGTTCTGTGGTTGAATTAATAAACCACTACCGGAATGAATCTCTAGCTCAGTATAATCCCAAATTGGATGTGAAATTACTTTATCCAGTATCCAAATACCAACAGGTAATAAAAACTGAATGAATTATCCAGTTACGATGTTTAGACAAGATCCTTTTAATACTTAGAAAACATTTGAAGCAGATGAATTACATGTAATCAAGTCTAAAAAACTTGACACTCGTAATTACATAATTGCAATTTTAAAGATGTTTCCATGTCAGCTATTTTGTTAAACAATTGTTATTTGATTAAATACCTTATCCATTGAATTTATTTTAATCTTTCTAGGATCAAGTTGTCAAAGAAGATAATATTGAAGCTGTAGGGAAAAAATTACATGAATATA	-			P-0037331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	79	208	0	ENST00000274335.5:c.1104_1358del		p.X368_splice	ENST00000274335		368	tATACTCTTACACTAAGGTAAGCCAGGGAATATAGCTGAAATTAGGGTTTTGGGCTGATATTAAAACATATTTCCTTATTCCAAAATGTTAATACCTTTATTTTTATATTGTTTTTACAGGAAAGGGGGAAATAACAAATTAATCAAAATATTTCATCGAGATGGGAAATATGGCTTCTCTGACCCATTAACCTTCAGTTCTGTGGTTGAATTAATAAACCACTACCGGAATGAATCTCTAGCTCAGTATAATCCCAAATTGGATGTGAAATTACTTTATCCAGTATCCAAATACCAACAGGTAATAAAAACTGAATGAATTATCCAGTTACGATGTTTAGACAAGATCCTTTTAATACTTAGAAAACATTTGAAGCAGATGAATTACATGTAATCAAGTCTAAAAAACTTGACACTCGTAATTACATAATTGCAATTTTAAAGATGTTTCCATGTCAGCTATTTTGTTAAACAATTGTTATTTGATTAAATACCTTATCCATTGAATTTATTTTAATCTTTCTAGGATCAAGTTGTCAAAGAAGATAATATTGAAGCTGTAGGGAAAAAATTACATGAATATAac/tac																																																																															
APC	324	MSKCC	GRCh37	5	112151271	112151271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	93	301	0	ENST00000257430.4:c.914C>A	p.Thr305Lys	p.T305K	ENST00000257430	NM_000038.5	305	aCa/aAa																																																																															
APC	324	MSKCC	GRCh37	5	112174979	112174979	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs863225344		P-0037331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	71	198	0	ENST00000257430.4:c.3688C>T	p.Gln1230Ter	p.Q1230*	ENST00000257430	NM_000038.5	1230	Cag/Tag																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38139056	38139056	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	135	547	0	ENST00000317025.8:c.3547G>T	p.Glu1183Ter	p.E1183*	ENST00000317025	NM_023034.1	1183	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	95	409	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	154	628	0	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct																																																																															
APC	324	MSKCC	GRCh37	5	112175466	112175466	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs786204170		P-0037341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	131	348	0	ENST00000257430.4:c.4175C>A	p.Ser1392Ter	p.S1392*	ENST00000257430	NM_000038.5	1392	tCa/tAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925334	114925334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	50	437	0	ENST00000543371.1:c.1412G>A	p.Arg471His	p.R471H	ENST00000543371	NM_001198531.1	471	cGc/cAc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456767	32456767	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	28	515	0	ENST00000332351.3:c.125A>C	p.Lys42Thr	p.K42T	ENST00000332351	NM_024426.4	42	aAg/aCg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41222965	41222965	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	159	645	0	ENST00000357654.3:c.4966G>T	p.Gly1656Cys	p.G1656C	ENST00000357654	NM_007294.3	1656	Ggc/Tgc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149501557	149501557	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	63	525	0	ENST00000261799.4:c.2230A>G	p.Ser744Gly	p.S744G	ENST00000261799	NM_002609.3	744	Agc/Ggc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55231433	55231433	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1427028322		P-0037341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	108	493	0	ENST00000275493.2:c.1639A>G	p.Arg547Gly	p.R547G	ENST00000275493	NM_005228.3	547	Agg/Ggg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8331663	8331663	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	126	486	1	ENST00000356435.5:c.5453A>T	p.Glu1818Val	p.E1818V	ENST00000356435		1818	gAa/gTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0037385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	88	513	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129169	64129169	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746466314		P-0037385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	84	477	2	ENST00000334205.4:c.707C>T	p.Ser236Leu	p.S236L	ENST00000334205	NM_003942.2	236	tCg/tTg																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519721	137519721	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0037385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	55	270	0	ENST00000367739.4:c.917C>G	p.Ser306Ter	p.S306*	ENST00000367739	NM_000416.2	306	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587782272		P-0037385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	245	409	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
TET1	80312	MSKCC	GRCh37	10	70406634	70406634	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs980829577		P-0037385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	122	479	0	ENST00000373644.4:c.4148C>T	p.Ser1383Leu	p.S1383L	ENST00000373644	NM_030625.2	1383	tCa/tTa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748479	43748479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	300	586	0	ENST00000382044.4:c.2327C>G	p.Ser776Cys	p.S776C	ENST00000382044	NM_001141980.1	776	tCt/tGt																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216566	7216566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	222	406	0	ENST00000380728.2:c.769G>A	p.Glu257Lys	p.E257K	ENST00000380728		257	Gaa/Aaa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961853	15961853	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0037385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	229	405	0	ENST00000268712.3:c.5942C>G	p.Ser1981Ter	p.S1981*	ENST00000268712	NM_006311.3	1981	tCa/tGa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37871550	37871550	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3003	1570	457	0	ENST00000269571.5:c.1160C>G	p.Ser387Cys	p.S387C	ENST00000269571		387	tCc/tGc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56171097	56171097	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs866945834		P-0037385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	84	268	0	ENST00000399503.3:c.1925T>G	p.Val642Gly	p.V642G	ENST00000399503	NM_005921.1	642	gTc/gGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945544	151945553	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGTGTAAC	GGTGTGTAAC	-			P-0037385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	114	303	0	ENST00000262189.6:c.1966_1975del	p.Val656ArgfsTer12	p.V656Rfs*12	ENST00000262189	NM_170606.2	656	GTTACACACCag/ag																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652261	48652261	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	154	508	0	ENST00000376670.3:c.932G>C	p.Gly311Ala	p.G311A	ENST00000376670	NM_002049.3	311	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0037387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	193	454	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519938		P-0037399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	70	303	0	ENST00000263967.3:c.1034A>T	p.Asn345Ile	p.N345I	ENST00000263967	NM_006218.2	345	aAt/aTt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155725	56155726	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0037399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	35	279	0	ENST00000399503.3:c.819_820del	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	273	AGa/a																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115435	115115437	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-	rs1319662056		P-0037399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	81	551	0	ENST00000257566.3:c.889_891del	p.Asn297del	p.N297del	ENST00000257566	NM_016569.3	297	AAC/-																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521735	89521735	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	69	364	0	ENST00000336596.2:c.2812del	p.Ser938ValfsTer6	p.S938Vfs*6	ENST00000336596	NM_005233.5	938	Agt/gt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56176561	56176579	+	frameshift_variant	Frame_Shift_Del	DEL	CAACACTGTTGGAACTGTG	CAACACTGTTGGAACTGTG	-			P-0037399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	61	379	0	ENST00000399503.3:c.2114_2132del	p.Thr705LysfsTer14	p.T705Kfs*14	ENST00000399503	NM_005921.1	704	tCAACACTGTTGGAACTGTGc/tc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184166	56184168	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0037399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	49	307	0	ENST00000399503.3:c.4372_4374del	p.Leu1458del	p.L1458del	ENST00000399503	NM_005921.1	1457	caTCTt/cat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189459	56189460	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	69	463	0	ENST00000399503.3:c.4493dup	p.Ser1499IlefsTer24	p.S1499Ifs*24	ENST00000399503	NM_005921.1	1497	-/C																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0037411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	246	694	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175476	112175476	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	248	355	0	ENST00000257430.4:c.4188del	p.Phe1396LeufsTer19	p.F1396Lfs*19	ENST00000257430	NM_000038.5	1395	agT/ag																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775614	9775614	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766440014		P-0037411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	210	520	1	ENST00000377346.4:c.157G>A	p.Ala53Thr	p.A53T	ENST00000377346	NM_005026.3	53	Gcc/Acc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753149	42753151	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs199960550		P-0037411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	218	594	4	ENST00000222329.4:c.1113_1115del	p.Ser373del	p.S373del	ENST00000222329	NM_006494.2	371	tcTTCc/tcc																																																																															
APC	324	MSKCC	GRCh37	5	112179566	112179566	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755366812		P-0037411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	105	325	0	ENST00000257430.4:c.8275C>T	p.Arg2759Cys	p.R2759C	ENST00000257430	NM_000038.5	2759	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0037510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	22	538	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435300	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-	rs765493638		P-0037510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	11	94	0	ENST00000375856.3:c.3099_3101del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1033	ccACCg/ccg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0037510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	19	480	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	216	473	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578397	7578397	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	127	566	0	ENST00000269305.4:c.533A>C	p.His178Pro	p.H178P	ENST00000269305	NM_001126112.2	178	cAc/cCc																																																																															
LMO1	4004	MSKCC	GRCh37	11	8246219	8246219	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	49	519	0	ENST00000335790.3:c.415C>T	p.Gln139Ter	p.Q139*	ENST00000335790	NM_002315.2	139	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0037537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	69	617	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0037537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	81	385	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39322567	39322567	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	39	347	0	ENST00000373001.3:c.425A>C	p.Tyr142Ser	p.Y142S	ENST00000373001	NM_022157.3	142	tAc/tCc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711861	89711875	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCTGTCCACCAGG	TTTCTGTCCACCAGG	-			P-0037670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	106	303	0	ENST00000371953.3:c.493-14_493del		p.X165_splice	ENST00000371953	NM_000314.4	165																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0037670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	79	303	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066772	30066772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	81	353	0	ENST00000331968.5:c.2359G>A	p.Glu787Lys	p.E787K	ENST00000331968	NM_002742.2	787	Gaa/Aaa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715615	30715615	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs104893817		P-0037670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	100	208	0	ENST00000359013.4:c.1348A>G	p.Met450Val	p.M450V	ENST00000359013	NM_001024847.2	450	Atg/Gtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0037670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	101	438	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185165587	185165587	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	56	210	0	ENST00000265026.3:c.862A>G	p.Thr288Ala	p.T288A	ENST00000265026	NM_004721.4	288	Acc/Gcc																																																																															
APC	324	MSKCC	GRCh37	5	112173830	112173831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	60	238	0	ENST00000257430.4:c.2544dup	p.Asp849ArgfsTer2	p.D849Rfs*2	ENST00000257430	NM_000038.5	847	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0037670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	44	226	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
APC	324	MSKCC	GRCh37	5	112178717	112178717	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	69	309	0	ENST00000257430.4:c.7426A>G	p.Arg2476Gly	p.R2476G	ENST00000257430	NM_000038.5	2476	Agg/Ggg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484335	8484335	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749208350		P-0037670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	33	335	0	ENST00000356435.5:c.3197G>A	p.Arg1066Gln	p.R1066Q	ENST00000356435		1066	cGa/cAa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410124	63410124	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	186	547	0	ENST00000330258.3:c.3043G>T	p.Glu1015Ter	p.E1015*	ENST00000330258	NM_152424.3	1015	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0037691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	263	656	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0038287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	108	378	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0038287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	52	387	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	39	222	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591125	67591125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	64	346	0	ENST00000274335.5:c.1718T>C	p.Leu573Pro	p.L573P	ENST00000274335		573	cTg/cCg																																																																															
MGA	23269	MSKCC	GRCh37	15	41961688	41961688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	97	460	0	ENST00000219905.7:c.596G>A	p.Arg199His	p.R199H	ENST00000219905	NM_001164273.1	199	cGt/cAt																																																																															
CDK8	1024	MSKCC	GRCh37	13	26956950	26956950	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0038287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	96	227	0	ENST00000381527.3:c.457-1G>T		p.X153_splice	ENST00000381527	NM_001260.1	153																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153332763	153332763	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0038287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	186	511	0	ENST00000281708.4:c.193A>T	p.Arg65Ter	p.R65*	ENST00000281708	NM_033632.3	65	Aga/Tga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86633858	86633858	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	73	344	1	ENST00000274376.6:c.967T>G	p.Leu323Val	p.L323V	ENST00000274376	NM_002890.2	323	Tta/Gta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	118	532	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0038395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	60	471	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175182	112175182	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	64	282	0	ENST00000257430.4:c.3892del	p.Ser1298LeufsTer7	p.S1298Lfs*7	ENST00000257430	NM_000038.5	1297	gaT/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578217	7578217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	192	810	0	ENST00000269305.4:c.632C>T	p.Thr211Ile	p.T211I	ENST00000269305	NM_001126112.2	211	aCt/aTt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176720964	176720964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	81	637	1	ENST00000439151.2:c.6595C>T	p.Arg2199Cys	p.R2199C	ENST00000439151	NM_022455.4	2199	Cgt/Tgt																																																																															
TAP1	6890	MSKCC	GRCh37	6	32814909	32814909	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121917702		P-0038395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	110	838	0	ENST00000354258.4:c.2156G>A	p.Arg719Gln	p.R719Q	ENST00000354258	NM_000593.5	719	cGg/cAg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885329	111885329	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	56	492	0	ENST00000341259.2:c.1217A>T	p.Asn406Ile	p.N406I	ENST00000341259	NM_005475.2	406	aAc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579400	7579400	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	222	792	0	ENST00000269305.4:c.287del	p.Ser96LeufsTer27	p.S96Lfs*27	ENST00000269305	NM_001126112.2	96	tCt/tt																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14380350	14380350	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	62	222	0	ENST00000256196.4:c.67G>T	p.Gly23Cys	p.G23C	ENST00000256196		23	Ggc/Tgc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162737115	162737115	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	230	464	1	ENST00000367921.3:c.1259T>C	p.Leu420Pro	p.L420P	ENST00000367921	NM_006182.2	420	cTc/cCc																																																																															
CASP8	841	MSKCC	GRCh37	2	202131231	202131232	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0038696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	106	423	0	ENST00000358485.4:c.200_201del	p.Tyr67Ter	p.Y67*	ENST00000358485	NM_001080125.1	67	TAt/t																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661765	227662331	+	inframe_deletion	In_Frame_Del	DEL	TGCCACCTCCTGGTGGGTAGGCAGGCATCATCTCTGTGTACTCCTCAATGGAAGCCACTGAGGACTGGGACGGGGTCTTCTGGTGGGTAATGGTAGGGGATGTGCCTGCCGAGTGAGTTCTCTTTCGGAACCGATTATCCAGATCTGCAGCACTGGCTGCTTCATCCCCAGCCAAGGCTGGACTCGTGCCCAAGCCTGTTCCTGGGGTGCAGCGGTGGCCATTGCCACCCCGAGACAAAATGTAGTGACCGTTGGGGGCGGTCAGGGTGGAGGGCCCCTTGCCACCCATGCAGATATAGTTGCTTAGCTCCTCCTCACCGCGGGCTGGTGGGGTGTGGCCCAGGGAATCCGGAGTGACACTGCGGAAGGAACTCCGGAAATCGCAGGGACTGGAGCCATACTCATCCGAGGAGATGAAACCGCCATCGCTGGGGGAACCAGACACCGAAGCACTAGATCGCCGTGGGAAGAGACAATCCGAGGTGGAGCCATGGCCACTGGTGCTACTGGACGACAGACTGACCGGGCTGGTGGCCGAAGGCGAGCAGCGGGAAGCCGGCATGGGGA	TGCCACCTCCTGGTGGGTAGGCAGGCATCATCTCTGTGTACTCCTCAATGGAAGCCACTGAGGACTGGGACGGGGTCTTCTGGTGGGTAATGGTAGGGGATGTGCCTGCCGAGTGAGTTCTCTTTCGGAACCGATTATCCAGATCTGCAGCACTGGCTGCTTCATCCCCAGCCAAGGCTGGACTCGTGCCCAAGCCTGTTCCTGGGGTGCAGCGGTGGCCATTGCCACCCCGAGACAAAATGTAGTGACCGTTGGGGGCGGTCAGGGTGGAGGGCCCCTTGCCACCCATGCAGATATAGTTGCTTAGCTCCTCCTCACCGCGGGCTGGTGGGGTGTGGCCCAGGGAATCCGGAGTGACACTGCGGAAGGAACTCCGGAAATCGCAGGGACTGGAGCCATACTCATCCGAGGAGATGAAACCGCCATCGCTGGGGGAACCAGACACCGAAGCACTAGATCGCCGTGGGAAGAGACAATCCGAGGTGGAGCCATGGCCACTGGTGCTACTGGACGACAGACTGACCGGGCTGGTGGCCGAAGGCGAGCAGCGGGAAGCCGGCATGGGGA	-			P-0038696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	182	709	0	ENST00000305123.5:c.1124_1690del	p.Ile375_Gly563del	p.I375_G563del	ENST00000305123	NM_005544.2	375	aTCCCCATGCCGGCTTCCCGCTGCTCGCCTTCGGCCACCAGCCCGGTCAGTCTGTCGTCCAGTAGCACCAGTGGCCATGGCTCCACCTCGGATTGTCTCTTCCCACGGCGATCTAGTGCTTCGGTGTCTGGTTCCCCCAGCGATGGCGGTTTCATCTCCTCGGATGAGTATGGCTCCAGTCCCTGCGATTTCCGGAGTTCCTTCCGCAGTGTCACTCCGGATTCCCTGGGCCACACCCCACCAGCCCGCGGTGAGGAGGAGCTAAGCAACTATATCTGCATGGGTGGCAAGGGGCCCTCCACCCTGACCGCCCCCAACGGTCACTACATTTTGTCTCGGGGTGGCAATGGCCACCGCTGCACCCCAGGAACAGGCTTGGGCACGAGTCCAGCCTTGGCTGGGGATGAAGCAGCCAGTGCTGCAGATCTGGATAATCGGTTCCGAAAGAGAACTCACTCGGCAGGCACATCCCCTACCATTACCCACCAGAAGACCCCGTCCCAGTCCTCAGTGGCTTCCATTGAGGAGTACACAGAGATGATGCCTGCCTACCCACCAGGAGGTGGCAgt/agt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55146590	55146590	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	132	424	0	ENST00000257290.5:c.2264C>A	p.Ser755Tyr	p.S755Y	ENST00000257290	NM_006206.4	755	tCc/tAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76920143	76920143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	51	432	0	ENST00000373344.5:c.3934G>A	p.Gly1312Arg	p.G1312R	ENST00000373344	NM_000489.3	1312	Gga/Aga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374249	118374249	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	76	406	0	ENST00000534358.1:c.7642G>C	p.Ala2548Pro	p.A2548P	ENST00000534358	NM_005933.3	2548	Gct/Cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7579362	7579363	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACC			P-0039290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	61	589	0	ENST00000269305.4:c.322_324dup	p.Gly108dup	p.G108dup	ENST00000269305	NM_001126112.2	108	-/GGT																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210402	2210402	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	20	517	0	ENST00000398665.3:c.1009G>T	p.Glu337Ter	p.E337*	ENST00000398665	NM_032482.2	337	Gaa/Taa																																																																															
MPL	4352	MSKCC	GRCh37	1	43805039	43805039	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	244	595	0	ENST00000372470.3:c.491del	p.Phe164SerfsTer2	p.F164Sfs*2	ENST00000372470	NM_005373.2	163	gaT/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0039393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	189	457	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120130	70120130	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	182	188	0	ENST00000245479.2:c.1132C>T	p.Gln378Ter	p.Q378*	ENST00000245479	NM_000346.3	378	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178937410	178937410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	56	109	0	ENST00000263967.3:c.1798G>A	p.Glu600Lys	p.E600K	ENST00000263967	NM_006218.2	600	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112111435	112111435	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0039393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	90	251	0	ENST00000257430.4:c.531+1G>A		p.X177_splice	ENST00000257430	NM_000038.5	177																																																																																
APC	324	MSKCC	GRCh37	5	112175634	112175634	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	148	392	0	ENST00000257430.4:c.4344del	p.Lys1449SerfsTer24	p.K1449Sfs*24	ENST00000257430	NM_000038.5	1448	aCc/ac																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670590	30670590	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	224	539	0	ENST00000376406.3:c.5930A>G	p.Lys1977Arg	p.K1977R	ENST00000376406	NM_014641.2	1977	aAg/aGg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265368	152265368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	219	469	0	ENST00000206249.3:c.821G>A	p.Gly274Glu	p.G274E	ENST00000206249	NM_000125.3	274	gGg/gAg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157488190	157488190	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34786733		P-0039393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	243	508	0	ENST00000346085.5:c.2896G>A	p.Gly966Ser	p.G966S	ENST00000346085	NM_020732.3	966	Ggc/Agc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894987	101894987	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	142	252	1	ENST00000374994.4:c.540A>T	p.Leu180Phe	p.L180F	ENST00000374994	NM_004612.2	180	ttA/ttT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412755	63412755	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	235	552	0	ENST00000330258.3:c.412G>T	p.Glu138Ter	p.E138*	ENST00000330258	NM_152424.3	138	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	27	328	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0039424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	23	588	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175891	112175891	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	15	172	0	ENST00000257430.4:c.4602del	p.Asn1535MetfsTer30	p.N1535Mfs*30	ENST00000257430	NM_000038.5	1534	Ggg/gg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	33	332	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591925	48591925	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660556		P-0039424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	18	335	0	ENST00000342988.3:c.1088G>A	p.Cys363Tyr	p.C363Y	ENST00000342988	NM_005359.5	363	tGt/tAt																																																																															
HIST2H3D	653604	MSKCC	GRCh37	1	149784845	149784845	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	17	223	0	ENST00000331491.1:c.392T>C	p.Ile131Thr	p.I131T	ENST00000331491	NM_001123375.2	131	aTc/aCc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11210194	11210194	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs995332350		P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	14	525	0	ENST00000361445.4:c.4559C>T	p.Ala1520Val	p.A1520V	ENST00000361445	NM_004958.3	1520	gCa/gTa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	16	380	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1181132297		P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	11	354	1	ENST00000342505.4:c.1016del	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874164	155874164	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1213963509		P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	12	674	0	ENST00000368323.3:c.367C>T	p.Arg123Cys	p.R123C	ENST00000368323	NM_006912.5	123	Cgt/Tgt																																																																															
CBL	867	MSKCC	GRCh37	11	119156107	119156107	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	31	646	0	ENST00000264033.4:c.1772T>C	p.Leu591Pro	p.L591P	ENST00000264033	NM_005188.3	591	cTg/cCg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	32	807	4	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
POLE	5426	MSKCC	GRCh37	12	133219536	133219536	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	170	698	0	ENST00000320574.5:c.4598A>G	p.Glu1533Gly	p.E1533G	ENST00000320574	NM_006231.2	1533	gAg/gGg																																																																															
POLE	5426	MSKCC	GRCh37	12	133219838	133219838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142508245		P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	141	621	0	ENST00000320574.5:c.4523G>A	p.Arg1508His	p.R1508H	ENST00000320574	NM_006231.2	1508	cGc/cAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32944594	32944594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	29	528	0	ENST00000380152.3:c.8387C>A	p.Pro2796His	p.P2796H	ENST00000380152		2796	cCt/cAt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95573958	95573958	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1256068472		P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	50	269	0	ENST00000343455.3:c.2791G>A	p.Val931Ile	p.V931I	ENST00000343455	NM_177438.2	931	Gtt/Att																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273878	10273878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	204	688	1	ENST00000330684.3:c.391G>A	p.Ala131Thr	p.A131T	ENST00000330684	NM_001134407.1	131	Gca/Aca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831069	72831069	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	100	455	0	ENST00000268489.5:c.5512C>T	p.Gln1838Ter	p.Q1838*	ENST00000268489	NM_006885.3	1838	Cag/Tag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs193920894		P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	32	498	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436149	56436149	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	192	724	2	ENST00000407977.2:c.988C>T	p.Arg330Ter	p.R330*	ENST00000407977		330	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			5	18	439	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123722	11123722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1263140481		P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	28	598	0	ENST00000344626.4:c.2372C>T	p.Ala791Val	p.A791V	ENST00000344626	NM_003072.3	791	gCg/gTg																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	96	510	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940111	49940112	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs760002850		P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	199	660	0	ENST00000296474.3:c.931dup	p.Ala311GlyfsTer26	p.A311Gfs*26	ENST00000296474	NM_002447.2	311	gcc/gGcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	18	361	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166497	32166497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	22	632	0	ENST00000375023.3:c.4546C>T	p.Pro1516Ser	p.P1516S	ENST00000375023	NM_004557.3	1516	Cca/Tca																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527516	157527516	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	10	560	0	ENST00000346085.5:c.5241T>G	p.Asp1747Glu	p.D1747E	ENST00000346085	NM_020732.3	1747	gaT/gaG																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874463	151874463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			11	15	422	0	ENST00000262189.6:c.8075A>G	p.Asp2692Gly	p.D2692G	ENST00000262189	NM_170606.2	2692	gAt/gGt																																																																															
ARAF	369	MSKCC	GRCh37	X	47426094	47426094	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	44	405	0	ENST00000377045.4:c.619del	p.Leu207TyrfsTer85	p.L207Yfs*85	ENST00000377045	NM_001654.4	205	gCc/gc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411366	63411366	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			6	33	340	0	ENST00000330258.3:c.1801C>T	p.Arg601Ter	p.R601*	ENST00000330258	NM_152424.3	601	Cga/Tga																																																																															
AR	367	MSKCC	GRCh37	X	66937372	66937372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			6	30	273	0	ENST00000374690.3:c.2226G>T	p.Trp742Cys	p.W742C	ENST00000374690	NM_000044.3	742	tgG/tgT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	216	437	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	33	404	0				ENST00000310581	NM_198253.2																																																																																	
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0039606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	128	318	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18524215	18524215	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769408892		P-0039606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	60	512	0	ENST00000266497.5:c.1727C>T	p.Ala576Val	p.A576V	ENST00000266497		576	gCg/gTg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864800	117864800	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs905123790		P-0039606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	165	348	0	ENST00000297338.2:c.1309C>T	p.Arg437Cys	p.R437C	ENST00000297338	NM_006265.2	437	Cgt/Tgt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910883	114910883	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1477809102		P-0039606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	177	463	0	ENST00000543371.1:c.1001+1G>A		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																																
APC	324	MSKCC	GRCh37	5	112175641	112175641	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	184	368	0	ENST00000257430.4:c.4350del	p.Glu1451LysfsTer22	p.E1451Kfs*22	ENST00000257430	NM_000038.5	1450	cgA/cg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862766	9862766	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746978701		P-0039606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	285	667	1	ENST00000330684.3:c.2537G>A	p.Arg846His	p.R846H	ENST00000330684	NM_001134407.1	846	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108186839	108186839	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0039606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	121	328	0	ENST00000278616.4:c.6197A>G	p.Gln2066Arg	p.Q2066R	ENST00000278616	NM_000051.3	2066	cAg/cGg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368252	45368252	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	24	438	0	ENST00000262160.6:c.1350C>A	p.Asp450Glu	p.D450E	ENST00000262160	NM_005901.5	450	gaC/gaA																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553245	106553245	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	189	616	0	ENST00000369096.4:c.1210C>G	p.Pro404Ala	p.P404A	ENST00000369096	NM_001198.3	404	Ccc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs530941076		P-0039702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	124	777	0	ENST00000269305.4:c.658T>C	p.Tyr220His	p.Y220H	ENST00000269305	NM_001126112.2	220	Tat/Cat																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771679	135771679	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	60	620	0	ENST00000298552.3:c.3438C>G	p.Asp1146Glu	p.D1146E	ENST00000298552	NM_001162426.1	1146	gaC/gaG																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	70	636	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933726	36933726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	43	805	0	ENST00000361632.4:c.1673C>T	p.Pro558Leu	p.P558L	ENST00000361632		558	cCc/cTc																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	22	510	3	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	29	480	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123263415	123263415	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757125418		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	28	569	0	ENST00000358487.5:c.1328C>T	p.Pro443Leu	p.P443L	ENST00000358487	NM_000141.4	443	cCg/cTg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136031	64136031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	47	749	1	ENST00000334205.4:c.1292G>A	p.Arg431His	p.R431H	ENST00000334205	NM_003942.2	431	cGc/cAc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138824	64138824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	35	779	1	ENST00000334205.4:c.2191C>T	p.Arg731Trp	p.R731W	ENST00000334205	NM_003942.2	731	Cgg/Tgg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572546	64572546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	33	731	0	ENST00000337652.1:c.1325C>T	p.Ala442Val	p.A442V	ENST00000337652	NM_130803.2	442	gCc/gTc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944191	71944191	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	23	621	0	ENST00000298229.2:c.2024A>T	p.Lys675Met	p.K675M	ENST00000298229	NM_001567.3	675	aAg/aTg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	38	461	2	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																															
KDM5A	5927	MSKCC	GRCh37	12	417050	417050	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199716528		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	14	384	0	ENST00000399788.2:c.3500G>A	p.Arg1167His	p.R1167H	ENST00000399788	NM_001042603.1	1167	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	69	493	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425931	49425931	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	52	820	0	ENST00000301067.7:c.12557C>A	p.Pro4186His	p.P4186H	ENST00000301067	NM_003482.3	4186	cCt/cAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133225574	133225574	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	79	755	1	ENST00000320574.5:c.4090del	p.Arg1364ValfsTer5	p.R1364Vfs*5	ENST00000320574	NM_006231.2	1364	Cgt/gt																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134102	41134102	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1218589643		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	48	503	0	ENST00000379561.5:c.1526G>A	p.Ser509Asn	p.S509N	ENST00000379561	NM_002015.3	509	aGc/aAc																																																																															
MGA	23269	MSKCC	GRCh37	15	41988284	41988284	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	37	572	0	ENST00000219905.7:c.1076G>T	p.Ser359Ile	p.S359I	ENST00000219905	NM_001164273.1	359	aGc/aTc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134972	2134972	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	17	848	0	ENST00000219476.3:c.4514A>G	p.Tyr1505Cys	p.Y1505C	ENST00000219476	NM_000548.3	1505	tAc/tGc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781901	3781903	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-	rs751071525		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	57	644	0	ENST00000262367.5:c.4764_4766del	p.Lys1588del	p.K1588del	ENST00000262367	NM_004380.2	1588	aaGAAc/aac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900384	3900384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146887252		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	25	702	0	ENST00000262367.5:c.712G>A	p.Val238Met	p.V238M	ENST00000262367	NM_004380.2	238	Gtg/Atg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943716	9943716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	64	839	0	ENST00000330684.3:c.1225G>A	p.Val409Ile	p.V409I	ENST00000330684	NM_001134407.1	409	Gtc/Atc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943779	9943779	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1211198789		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	70	640	0	ENST00000330684.3:c.1162G>A	p.Ala388Thr	p.A388T	ENST00000330684	NM_001134407.1	388	Gcc/Acc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50828228	50828228	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	33	499	0	ENST00000398568.2:c.2566A>C	p.Met856Leu	p.M856L	ENST00000398568	NM_001042412.1	856	Atg/Ctg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	36	923	3	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	38	748	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435732	56435732	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs775121749		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	45	618	0	ENST00000407977.2:c.1405G>T	p.Gly469Trp	p.G469W	ENST00000407977		469	Ggg/Tgg																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66526472	66526472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	26	505	1	ENST00000358598.2:c.1028G>A	p.Gly343Asp	p.G343D	ENST00000358598	NM_212471.2	343	gGc/gAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119780	70119781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	24	709	0	ENST00000245479.2:c.782_783insT	p.Glu261AspfsTer35	p.E261Dfs*35	ENST00000245479	NM_000346.3	261	gag/gaTg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1627411	1627411	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377688933		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	58	782	3	ENST00000344749.5:c.313C>T	p.Arg105Trp	p.R105W	ENST00000344749	NM_001136139.2	105	Cgg/Tgg																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626892	14626892	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	92	701	0	ENST00000254322.2:c.883C>T	p.Arg295Ter	p.R295*	ENST00000254322	NM_006145.1	295	Cga/Tga																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350553	15350553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	19	772	4	ENST00000263377.2:c.3362G>A	p.Arg1121His	p.R1121H	ENST00000263377	NM_058243.2	1121	cGc/cAc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375538	15375538	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	57	858	0	ENST00000263377.2:c.889C>A	p.Pro297Thr	p.P297T	ENST00000263377	NM_058243.2	297	Ccc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228979	36228979	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	42	746	1	ENST00000222270.7:c.7759C>T	p.Arg2587Ter	p.R2587*	ENST00000222270	NM_014727.1	2587	Cga/Tga																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	57	705	6	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
ASXL2	55252	MSKCC	GRCh37	2	25982440	25982440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	80	400	0	ENST00000435504.4:c.850C>T	p.Arg284Ter	p.R284*	ENST00000435504		284	Cga/Tga																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027019	48027019	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	36	460	0	ENST00000234420.5:c.1897A>C	p.Thr633Pro	p.T633P	ENST00000234420	NM_000179.2	633	Act/Cct																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	37	535	0	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190708721	190708721	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	53	482	0	ENST00000441310.2:c.614A>G	p.Asp205Gly	p.D205G	ENST00000441310	NM_000534.4	205	gAt/gGt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661836	227661836	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs577407654		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	23	968	3	ENST00000305123.5:c.1619C>T	p.Pro540Leu	p.P540L	ENST00000305123	NM_005544.2	540	cCg/cTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023375	31023375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	23	574	0	ENST00000375687.4:c.2860G>A	p.Asp954Asn	p.D954N	ENST00000375687	NM_015338.5	954	Gac/Aac																																																																															
SRC	6714	MSKCC	GRCh37	20	36031762	36031762	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913314		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	41	613	0	ENST00000358208.4:c.1591C>T	p.Gln531Ter	p.Q531*	ENST00000358208		531	Cag/Tag																																																																															
SRC	6714	MSKCC	GRCh37	20	36031768	36031768	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754707860		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	18	574	1	ENST00000358208.4:c.1597G>A	p.Gly533Arg	p.G533R	ENST00000358208		533	Ggg/Agg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306584	41306584	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	29	717	0	ENST00000373198.4:c.1075C>T	p.Arg359Ter	p.R359*	ENST00000373198	NM_133170.3	359	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385164	41385164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	17	779	1	ENST00000373198.4:c.797G>A	p.Arg266His	p.R266H	ENST00000373198	NM_133170.3	266	cGc/cAc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164486	36164486	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	60	549	0	ENST00000300305.3:c.1389del	p.Thr464ProfsTer130	p.T464Pfs*130	ENST00000300305		463	ccC/cc																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656878	45656878	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1306205252		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	63	705	1	ENST00000407780.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000407780	NM_001283052.1	93	cGg/cAg																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22127209	22127209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	26	592	1	ENST00000215832.6:c.919G>A	p.Ala307Thr	p.A307T	ENST00000215832	NM_002745.4	307	Gct/Act																																																																															
EP300	2033	MSKCC	GRCh37	22	41545790	41545790	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749702423		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	48	611	1	ENST00000263253.7:c.2405C>T	p.Pro802Leu	p.P802L	ENST00000263253	NM_001429.3	802	cCg/cTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41566520	41566520	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	21	448	0	ENST00000263253.7:c.4397G>T	p.Trp1466Leu	p.W1466L	ENST00000263253	NM_001429.3	1466	tGg/tTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	41	462	1	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165213	47165213	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	11	298	0	ENST00000409792.3:c.913del	p.Thr305GlnfsTer35	p.T305Qfs*35	ENST00000409792	NM_014159.6	305	Aca/ca																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437608	52437608	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs535796204		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	84	823	1	ENST00000460680.1:c.1553G>A	p.Arg518Gln	p.R518Q	ENST00000460680	NM_004656.3	518	cGg/cAg																																																																															
MITF	4286	MSKCC	GRCh37	3	69986988	69986988	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs994568417		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	64	550	0	ENST00000352241.4:c.370G>A	p.Glu124Lys	p.E124K	ENST00000352241	NM_198159.2	124	Gaa/Aaa																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	64	695	2	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	40	590	3	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542109	187542110	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	19	419	0	ENST00000441802.2:c.5630dup	p.Val1878CysfsTer8	p.V1878Cfs*8	ENST00000441802	NM_005245.3	1877	cct/ccCt																																																																															
SDHA	6389	MSKCC	GRCh37	5	225600	225600	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777600956		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	21	250	0	ENST00000264932.6:c.379G>A	p.Val127Met	p.V127M	ENST00000264932	NM_004168.2	127	Gtg/Atg																																																																															
TERT	7015	MSKCC	GRCh37	5	1278821	1278821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150819225		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	72	800	0	ENST00000310581.5:c.2221G>A	p.Val741Met	p.V741M	ENST00000310581	NM_198253.2	741	Gtg/Atg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149439390	149439390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	46	738	0	ENST00000286301.3:c.2005G>T	p.Gly669Cys	p.G669C	ENST00000286301	NM_005211.3	669	Ggc/Tgc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324917	31324917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	55	668	0	ENST00000412585.2:c.19del	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000412585	NM_005514.6	7	Cga/ga																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798218	32798218	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	46	570	0	ENST00000374899.4:c.1462-1G>T		p.X488_splice	ENST00000374899	NM_018833.2	488																																																																																
TAP2	6891	MSKCC	GRCh37	6	32805787	32805788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1174402903		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	59	821	0	ENST00000374899.4:c.223dup	p.Leu75ProfsTer92	p.L75Pfs*92	ENST00000374899	NM_018833.2	75	ctg/cCtg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818213	32818213	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs143800384		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	106	715	1	ENST00000354258.4:c.1312C>T	p.Arg438Ter	p.R438*	ENST00000354258	NM_000593.5	438	Cga/Tga																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553255	106553255	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	72	630	0	ENST00000369096.4:c.1220A>G	p.Asn407Ser	p.N407S	ENST00000369096	NM_001198.3	407	aAc/aGc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001350	150001350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	55	636	0	ENST00000253339.5:c.2254G>A	p.Ala752Thr	p.A752T	ENST00000253339		752	Gct/Act																																																																															
CARD11	84433	MSKCC	GRCh37	7	2979543	2979543	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148083162		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	33	529	0	ENST00000396946.4:c.704G>A	p.Arg235Gln	p.R235Q	ENST00000396946	NM_032415.4	235	cGg/cAg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729291	41729291	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	14	514	1	ENST00000242208.4:c.1238del	p.Lys413ArgfsTer6	p.K413Rfs*6	ENST00000242208	NM_002192.2	413	aAg/ag																																																																															
MET	4233	MSKCC	GRCh37	7	116398625	116398625	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45587940		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	42	492	1	ENST00000397752.3:c.2215C>T	p.Arg739Cys	p.R739C	ENST00000397752	NM_000245.2	739	Cgt/Tgt																																																																															
MET	4233	MSKCC	GRCh37	7	116411880	116411883	+	intron_variant	Intron	DEL	TCTT	TCTT	-	rs747887276		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	59	859	0	ENST00000397752.3:c.2888-16_2888-13del		p.*963*	ENST00000397752	NM_000245.2																																																																																	
KMT2C	58508	MSKCC	GRCh37	7	151864311	151864311	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760393462		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	26	581	1	ENST00000262189.6:c.9670C>T	p.Arg3224Cys	p.R3224C	ENST00000262189	NM_170606.2	3224	Cgt/Tgt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878863	151878863	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	49	616	0	ENST00000262189.6:c.6082C>T	p.Arg2028Ter	p.R2028*	ENST00000262189	NM_170606.2	2028	Cga/Tga																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981752	70981752	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	30	926	2	ENST00000276594.2:c.344T>C	p.Leu115Pro	p.L115P	ENST00000276594	NM_024504.3	115	cTg/cCg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117866587	117866587	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	37	518	0	ENST00000297338.2:c.1058T>G	p.Leu353Arg	p.L353R	ENST00000297338	NM_006265.2	353	cTg/cGg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117878932	117878932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	33	418	0	ENST00000297338.2:c.37C>T	p.Pro13Ser	p.P13S	ENST00000297338	NM_006265.2	13	Cct/Tct																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231211	98231211	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	34	722	0	ENST00000331920.6:c.2072C>A	p.Thr691Asn	p.T691N	ENST00000331920	NM_000264.3	691	aCc/aAc																																																																															
ABL1	25	MSKCC	GRCh37	9	133760702	133760702	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	96	932	0	ENST00000318560.5:c.3025C>T	p.Arg1009Ter	p.R1009*	ENST00000318560	NM_005157.4	1009	Cga/Tga																																																																															
ABL1	25	MSKCC	GRCh37	9	133760768	133760768	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757631617		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	17	756	0	ENST00000318560.5:c.3091G>A	p.Val1031Met	p.V1031M	ENST00000318560	NM_005157.4	1031	Gtg/Atg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390936	139390936	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs746218012		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	19	918	1	ENST00000277541.6:c.7255C>A	p.Leu2419Ile	p.L2419I	ENST00000277541	NM_017617.3	2419	Ctt/Att																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039405	47039405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	48	700	1	ENST00000329236.7:c.797G>A	p.Arg266His	p.R266H	ENST00000329236	NM_001204466.1	266	cGc/cAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852217		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	60	940	1	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919101	178919101	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs541134560		P-0039967-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			197	11	199	2	ENST00000263967.3:c.586G>A	p.Val196Ile	p.V196I	ENST00000263967	NM_006218.2	196	Gta/Ata																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0040024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	193	407	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679703	88679703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	60	332	0	ENST00000360948.2:c.760C>T	p.His254Tyr	p.H254Y	ENST00000360948	NM_001012338.2	254	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578255	7578274	+	frameshift_variant	Frame_Shift_Del	DEL	TTCCACTCGGATAAGATGCT	TTCCACTCGGATAAGATGCT	-			P-0040024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	275	447	0	ENST00000269305.4:c.575_594del	p.Gln192ArgfsTer10	p.Q192Rfs*10	ENST00000269305	NM_001126112.2	192	cAGCATCTTATCCGAGTGGAA/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0040027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	376	852	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114905824	114905843	+	frameshift_variant	Frame_Shift_Del	DEL	CACAGCTCTGACCGTCAATG	CACAGCTCTGACCGTCAATG	-			P-0040027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	105	638	0	ENST00000543371.1:c.844_863del	p.Thr282PhefsTer39	p.T282Ffs*39	ENST00000543371	NM_001198531.1	281	ccCACAGCTCTGACCGTCAATGct/ccct																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467088	25467088	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs899717364		P-0040027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	166	835	0	ENST00000264709.3:c.1787G>A	p.Arg596Gln	p.R596Q	ENST00000264709	NM_175629.2	596	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112116553	112116554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	115	351	0	ENST00000257430.4:c.599dup	p.Met200IlefsTer52	p.M200Ifs*52	ENST00000257430	NM_000038.5	200	atg/aTtg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	111	267	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	127	472	0	ENST00000269305.4:c.398T>A	p.Met133Lys	p.M133K	ENST00000269305	NM_001126112.2	133	aTg/aAg																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0040362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	30	165	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175897	112175897	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	35	143	0	ENST00000257430.4:c.4606G>T	p.Glu1536Ter	p.E1536*	ENST00000257430	NM_000038.5	1536	Gaa/Taa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720711	89720711	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	33	63	0	ENST00000371953.3:c.862G>T	p.Glu288Ter	p.E288*	ENST00000371953	NM_000314.4	288	Gaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108121669	108121669	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750280306		P-0040362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	55	298	1	ENST00000278616.4:c.1477C>T	p.Arg493Cys	p.R493C	ENST00000278616	NM_000051.3	493	Cgt/Tgt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29005429	29005429	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372354806		P-0040362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	23	210	0	ENST00000282397.4:c.832G>A	p.Val278Ile	p.V278I	ENST00000282397	NM_002019.4	278	Gta/Ata																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509128	66509128	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1439062174		P-0040362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	23	205	1	ENST00000273854.3:c.199C>T	p.Arg67Cys	p.R67C	ENST00000273854	NM_004439.5	67	Cgc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108186602	108186602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	26	212	0	ENST00000278616.4:c.6059G>A	p.Gly2020Asp	p.G2020D	ENST00000278616	NM_000051.3	2020	gGc/gAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822034	72822039	+	inframe_deletion	In_Frame_Del	DEL	GCTGCT	GCTGCT	-	rs772077493		P-0040362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	41	245	0	ENST00000268489.5:c.10136_10141del	p.Gln3379_Gln3380del	p.Q3379_Q3380del	ENST00000268489	NM_006885.3	3379	cAGCAGCgg/cgg																																																																															
EP300	2033	MSKCC	GRCh37	22	41513386	41513386	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	39	402	0	ENST00000263253.7:c.290T>G	p.Val97Gly	p.V97G	ENST00000263253	NM_001429.3	97	gTt/gGt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436852	52436852	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1386810597		P-0040725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	44	449	0	ENST00000460680.1:c.1926G>C	p.Glu642Asp	p.E642D	ENST00000460680	NM_004656.3	642	gaG/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578516	7578610	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAA	GGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAA	-			P-0040725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	123	626	0	ENST00000269305.4:c.376-56_414del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
HOXB13	10481	MSKCC	GRCh37	17	46805721	46805721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	274	610	0	ENST00000290295.7:c.235C>A	p.Pro79Thr	p.P79T	ENST00000290295	NM_006361.5	79	Cct/Act																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41420054	41420054	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	62	295	0	ENST00000373198.4:c.267C>G	p.His89Gln	p.H89Q	ENST00000373198	NM_133170.3	89	caC/caG																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436845	52436845	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	42	473	1	ENST00000460680.1:c.1933A>T	p.Asn645Tyr	p.N645Y	ENST00000460680	NM_004656.3	645	Aac/Tac																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139794938	139794938	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	278	404	0	ENST00000247668.2:c.332G>C	p.Gly111Ala	p.G111A	ENST00000247668	NM_021138.3	111	gGa/gCa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922944	44922944	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	32	435	0	ENST00000377967.4:c.1805G>T	p.Gly602Val	p.G602V	ENST00000377967	NM_021140.2	602	gGa/gTa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53224523	53224523	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	98	605	0	ENST00000375401.3:c.3190G>C	p.Gly1064Arg	p.G1064R	ENST00000375401	NM_004187.3	1064	Ggg/Cgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0040746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	77	757	0	ENST00000269305.4:c.497C>G	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tGa																																																																															
BRAF	673	MSKCC	GRCh37	7	140477837	140477851	+	inframe_deletion	In_Frame_Del	DEL	TAGGTGCTGTCACAT	TAGGTGCTGTCACAT	-			P-0040746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	66	472	0	ENST00000288602.6:c.1457_1471del	p.Asn486_Pro490del	p.N486_P490del	ENST00000288602	NM_004333.4	486	aATGTGACAGCACCTAca/aca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974690	21974691	+	missense_variant	Missense_Mutation	DNP	CG	CG	TT			P-0040746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	38	444	2	ENST00000304494.5:c.136_137delinsAA	p.Arg46Lys	p.R46K	ENST00000304494	NM_000077.4	46	CGg/AAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	115	344	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0040783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	595	804	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0040783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	118	383	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937913	36937913	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148747030		P-0040783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	125	849	2	ENST00000361632.4:c.923G>A	p.Arg308His	p.R308H	ENST00000361632		308	cGc/cAc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473708	67473708	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs387906855		P-0040783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	288	582	1	ENST00000327367.4:c.788C>T	p.Pro263Leu	p.P263L	ENST00000327367	NM_005902.3	263	cCc/cTc																																																																															
RARA	5914	MSKCC	GRCh37	17	38487487	38487487	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1173565250		P-0040783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	34	377	0	ENST00000254066.5:c.17G>A	p.Ser6Asn	p.S6N	ENST00000254066	NM_000964.3	6	aGc/aAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023480	31023480	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	280	498	0	ENST00000375687.4:c.2965T>C	p.Ser989Pro	p.S989P	ENST00000375687	NM_015338.5	989	Tct/Cct																																																																															
APC	324	MSKCC	GRCh37	5	112175530	112175547	+	frameshift_variant	Frame_Shift_Del	DEL	GGTAAGTGGCATTATAAG	GGTAAGTGGCATTATAAG	TATAACC			P-0040783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	118	309	2	ENST00000257430.4:c.4239_4256delinsTATAACC	p.Met1413IlefsTer6	p.M1413Ifs*6	ENST00000257430	NM_000038.5	1413	atGGTAAGTGGCATTATAAGc/atTATAACCc																																																																															
BLM	641	MSKCC	GRCh37	15	91292916	91292916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	99	466	0	ENST00000355112.3:c.418G>A	p.Glu140Lys	p.E140K	ENST00000355112	NM_000057.2	140	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0040834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	225	611	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	119	593	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
HRAS	3265	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28933406		P-0040939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	97	995	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0040939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	58	436	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916855	178916855	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	112	854	0	ENST00000263967.3:c.242A>C	p.Glu81Ala	p.E81A	ENST00000263967	NM_006218.2	81	gAa/gCa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190825	32190825	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779661107		P-0040939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	88	995	0	ENST00000375023.3:c.112G>A	p.Gly38Arg	p.G38R	ENST00000375023	NM_004557.3	38	Gga/Aga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0040957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	190	554	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577546	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCCCATGCAG	GCCGCCCATGCAG	-			P-0040957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	177	634	1	ENST00000269305.4:c.723_735del	p.Cys242Ter	p.C242*	ENST00000269305	NM_001126112.2	241	tcCTGCATGGGCGGC/tc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49927964	49927964	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs539807742		P-0040957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	67	690	1	ENST00000296474.3:c.3764C>T	p.Ala1255Val	p.A1255V	ENST00000296474	NM_002447.2	1255	gCg/gTg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940931	49940931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	237	768	0	ENST00000296474.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000296474	NM_002447.2	38	Cgc/Tgc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71101768	71101768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	86	209	0	ENST00000318789.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000318789	NM_032682.5	144	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0040957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	29	443	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175552	112175552	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	100	415	0	ENST00000257430.4:c.4261del	p.Ser1421ValfsTer52	p.S1421Vfs*52	ENST00000257430	NM_000038.5	1421	Agt/gt																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs926053251		P-0040957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	191	610	0	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	24	319	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	62	317	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	59	450	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	70	659	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	89	270	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112170777	112170780	+	frameshift_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	103	561	0	ENST00000257430.4:c.1875_1878del	p.Asn627LeufsTer2	p.N627Lfs*2	ENST00000257430	NM_000038.5	625	CAGAca/ca																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	117	647	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306568	41306568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	67	630	0	ENST00000373198.4:c.1091G>A	p.Arg364Gln	p.R364Q	ENST00000373198	NM_133170.3	364	cGa/cAa																																																																															
ATRX	546	MSKCC	GRCh37	X	76937984	76937984	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373581602		P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	45	447	0	ENST00000373344.5:c.2764G>A	p.Asp922Asn	p.D922N	ENST00000373344	NM_000489.3	922	Gat/Aat																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944836	31944836	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148314204		P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	172	762	0	ENST00000340398.3:c.265G>A	p.Val89Ile	p.V89I	ENST00000340398	NM_001013699.2	89	Gtc/Atc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106352	27106352	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	62	602	0	ENST00000324856.7:c.5963T>A	p.Ile1988Asn	p.I1988N	ENST00000324856	NM_006015.4	1988	aTt/aAt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984365	201984366	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	154	607	0	ENST00000359651.3:c.1032_1033dup	p.Val345GlyfsTer103	p.V345Gfs*103	ENST00000359651		344	cgg/cGGgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114905815	114905816	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	54	526	0	ENST00000543371.1:c.836_837del	p.Pro279LeufsTer48	p.P279Lfs*48	ENST00000543371	NM_001198531.1	278	caCCcc/cacc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843535	156843535	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369367198		P-0041012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	102	619	0	ENST00000524377.1:c.961G>A	p.Val321Met	p.V321M	ENST00000524377	NM_002529.3	321	Gtg/Atg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508473	106508473	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1370328855		P-0041012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	45	219	0	ENST00000359195.3:c.467C>T	p.Ala156Val	p.A156V	ENST00000359195	NM_002649.2	156	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0041012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	128	482	0	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
APC	324	MSKCC	GRCh37	5	112175346	112175350	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAA	TTGAA	-			P-0041012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	24	194	0	ENST00000257430.4:c.4057_4061del	p.Glu1353PhefsTer20	p.E1353Ffs*20	ENST00000257430	NM_000038.5	1352	gTTGAA/g																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831482	72831482	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	134	506	0	ENST00000268489.5:c.5099A>C	p.Asn1700Thr	p.N1700T	ENST00000268489	NM_006885.3	1700	aAc/aCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	45	355	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0041123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	64	466	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238758086		P-0041123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	206	833	0	ENST00000358026.2:c.2729C>T	p.Thr910Met	p.T910M	ENST00000358026	NM_001128849.1	910	aCg/aTg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482864	67482864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	183	479	0	ENST00000327367.4:c.1268G>T	p.Ser423Ile	p.S423I	ENST00000327367	NM_005902.3	423	aGt/aTt																																																																															
SRC	6714	MSKCC	GRCh37	20	36031708	36031708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	191	814	0	ENST00000358208.4:c.1537G>A	p.Glu513Lys	p.E513K	ENST00000358208		513	Gag/Aag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117351	115117351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1234535767		P-0041123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	60	300	0	ENST00000257566.3:c.823G>A	p.Glu275Lys	p.E275K	ENST00000257566	NM_016569.3	275	Gaa/Aaa																																																																															
ALK	238	MSKCC	GRCh37	2	29462635	29462635	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747611056		P-0041123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	158	796	1	ENST00000389048.3:c.2266G>A	p.Gly756Ser	p.G756S	ENST00000389048	NM_004304.4	756	Ggc/Agc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120291	70120292	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	221	878	0	ENST00000245479.2:c.1294dup	p.Tyr432LeufsTer146	p.Y432Lfs*146	ENST00000245479	NM_000346.3	431	-/T																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45371773	45371773	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0041123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	110	350	0	ENST00000262160.6:c.1218T>A	p.Tyr406Ter	p.Y406*	ENST00000262160	NM_005901.5	406	taT/taA																																																																															
MSH3	4437	MSKCC	GRCh37	5	79966007	79966007	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs772141055		P-0041123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	82	465	0	ENST00000265081.6:c.671G>T	p.Arg224Leu	p.R224L	ENST00000265081	NM_002439.4	224	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	85	457	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0041281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	106	507	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0041281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	118	611	2	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
ATM	472	MSKCC	GRCh37	11	108119687	108119687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	25	263	0	ENST00000278616.4:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000278616	NM_000051.3	365	Gag/Aag																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641058	23641058	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	86	759	0	ENST00000261584.4:c.2417C>G	p.Pro806Arg	p.P806R	ENST00000261584	NM_024675.3	806	cCg/cGg																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96930920	96930920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	69	664	0	ENST00000258439.3:c.200G>A	p.Gly67Glu	p.G67E	ENST00000258439	NM_001193304.2	67	gGg/gAg																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137522025	137522025	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	27	275	0	ENST00000367739.4:c.854A>T	p.Lys285Met	p.K285M	ENST00000367739	NM_000416.2	285	aAg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151902215	151902215	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	52	543	0	ENST00000262189.6:c.3937G>T	p.Glu1313Ter	p.E1313*	ENST00000262189	NM_170606.2	1313	Gag/Tag																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22008934	22008934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	140	625	0	ENST00000276925.6:c.19G>A	p.Gly7Ser	p.G7S	ENST00000276925	NM_004936.3	7	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0041283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	520	919	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857047	9857047	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs568622613		P-0041283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	55	425	0	ENST00000330684.3:c.4354C>T	p.Arg1452Cys	p.R1452C	ENST00000330684	NM_001134407.1	1452	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0041283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	274	403	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830778	72830778	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781579217		P-0041283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	117	844	0	ENST00000268489.5:c.5803C>T	p.Arg1935Cys	p.R1935C	ENST00000268489	NM_006885.3	1935	Cgc/Tgc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434992	110434992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	478	836	0	ENST00000375856.3:c.3409C>T	p.Arg1137Cys	p.R1137C	ENST00000375856	NM_003749.2	1137	Cgc/Tgc																																																																															
HRAS	3265	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28933406		P-0041290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	13	743	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425589	49425589	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	36	802	0	ENST00000301067.7:c.12899del	p.Pro4300GlnfsTer84	p.P4300Qfs*84	ENST00000301067	NM_003482.3	4300	cCa/ca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831381	72831382	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	TTGTTA			P-0041290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	18	346	0	ENST00000268489.5:c.5199_5200insTAACAA	p.Gln1733_Gln1734insTer	p.Q1733_Q1734ins*	ENST00000268489	NM_006885.3	1733	-/TAACAA																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	45	283	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs587782082		P-0041420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	255	666	0	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg																																																																															
WT1	7490	MSKCC	GRCh37	11	32449535	32449535	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779813097		P-0041420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	182	830	0	ENST00000332351.3:c.839G>A	p.Ser280Asn	p.S280N	ENST00000332351	NM_024426.4	280	aGc/aAc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21624568	21624568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	28	417	0	ENST00000421138.2:c.1461G>T	p.Lys487Asn	p.K487N	ENST00000421138		487	aaG/aaT																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341526	89341526	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	36	606	0	ENST00000301030.4:c.7544T>G	p.Leu2515Arg	p.L2515R	ENST00000301030	NM_001256183.1	2515	cTg/cGg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101008	41101008	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	144	674	0	ENST00000373198.4:c.1348C>T	p.Arg450Ter	p.R450*	ENST00000373198	NM_133170.3	450	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	34	465	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RB1	5925	MSKCC	GRCh37	13	49030478	49030479	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	47	371	0	ENST00000267163.4:c.1959dup	p.Val654SerfsTer14	p.V654Sfs*14	ENST00000267163	NM_000321.2	651	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578460	+	frameshift_variant	Frame_Shift_Del	DEL	CGGA	CGGA	-			P-0041517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	92	720	0	ENST00000269305.4:c.470_473del	p.Val157AlafsTer12	p.V157Afs*12	ENST00000269305	NM_001126112.2	157	gTCCGc/gc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968937	15968937	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762318164		P-0041517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	49	497	0	ENST00000268712.3:c.4813G>A	p.Ala1605Thr	p.A1605T	ENST00000268712	NM_006311.3	1605	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7576868	7576868	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	392	567	0	ENST00000269305.4:c.978del	p.Glu326AspfsTer19	p.E326Dfs*19	ENST00000269305	NM_001126112.2	326	gaA/ga																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891308	101891308	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	343	574	0	ENST00000374994.4:c.269C>A	p.Ser90Ter	p.S90*	ENST00000374994	NM_004612.2	90	tCa/tAa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117645564	117645564	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	249	535	0	ENST00000368508.3:c.5572C>G	p.Pro1858Ala	p.P1858A	ENST00000368508	NM_002944.2	1858	Cca/Gca																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15975497	15975497	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	272	492	0	ENST00000268712.3:c.3857T>C	p.Leu1286Pro	p.L1286P	ENST00000268712	NM_006311.3	1286	cTc/cCc																																																																															
BTK	695	MSKCC	GRCh37	X	100614300	100614300	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	350	250	0	ENST00000308731.7:c.875A>G	p.Glu292Gly	p.E292G	ENST00000308731	NM_000061.2	292	gAg/gGg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814915	139814924	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCCGGCA	GCAGCCGGCA	-			P-0041552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	214	536	0	ENST00000247668.2:c.911_920del	p.Ser304ThrfsTer11	p.S304Tfs*11	ENST00000247668	NM_021138.3	303	tGCAGCCGGCAg/tg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589578	67589583	+	inframe_deletion	In_Frame_Del	DEL	AAAATT	AAAATT	-			P-0041605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	39	214	0	ENST00000274335.5:c.1342_1347del	p.Lys448_Leu449del	p.K448_L449del	ENST00000274335		447	aaAAAATTa/aaa																																																																															
HGF	3082	MSKCC	GRCh37	7	81374361	81374361	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1476385169		P-0041605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	261	356	2	ENST00000222390.5:c.701G>A	p.Arg234His	p.R234H	ENST00000222390	NM_000601.4	234	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579578	7579582	+	frameshift_variant	Frame_Shift_Del	DEL	ACGGC	ACGGC	-			P-0041605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	291	701	0	ENST00000269305.4:c.105_109del	p.Leu35PhefsTer6	p.L35Ffs*6	ENST00000269305	NM_001126112.2	35	ttGCCGTcc/ttcc																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80343494	80343494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	23	420	0	ENST00000286548.4:c.825G>C	p.Lys275Asn	p.K275N	ENST00000286548	NM_002072.3	275	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0042017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	246	723	1	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0042017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	132	361	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265046	46265046	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs575619475		P-0042017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	576	514	0	ENST00000371998.3:c.1916A>G	p.Asn639Ser	p.N639S	ENST00000371998		639	aAc/aGc																																																																															
APC	324	MSKCC	GRCh37	5	112175339	112175350	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGCTGTTGAA	AAAGCTGTTGAA	G			P-0042017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	30	221	0	ENST00000257430.4:c.4048_4059delinsG	p.Lys1350ValfsTer21	p.K1350Vfs*21	ENST00000257430	NM_000038.5	1350	AAAGCTGTTGAA/G																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720654	89720654	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	64	101	0	ENST00000371953.3:c.808del	p.Met270CysfsTer6	p.M270Cfs*6	ENST00000371953	NM_000314.4	269	Aaa/aa																																																																															
CDH1	999	MSKCC	GRCh37	16	68844245	68844245	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs878854697		P-0042029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	83	227	0	ENST00000261769.5:c.832+1G>T		p.X278_splice	ENST00000261769	NM_004360.3	278																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264066389		P-0042137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	133	686	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229069	36229069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	151	985	1	ENST00000222270.7:c.7849C>T	p.Arg2617Trp	p.R2617W	ENST00000222270	NM_014727.1	2617	Cgg/Tgg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38282202	38282202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	64	823	1	ENST00000425967.3:c.854G>A	p.Arg285Gln	p.R285Q	ENST00000425967	NM_001174067.1	285	cGg/cAg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858895	57858895	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0042137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	212	725	0	ENST00000228682.2:c.391C>T	p.Pro131Ser	p.P131S	ENST00000228682	NM_005269.2	131	Cca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578259	7578259	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	237	821	0	ENST00000269305.4:c.590del	p.Val197GlyfsTer50	p.V197Gfs*50	ENST00000269305	NM_001126112.2	197	gTg/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0042143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	134	352	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061193	38061193	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	163	471	0	ENST00000250448.2:c.796T>G	p.Phe266Val	p.F266V	ENST00000250448	NM_004496.3	266	Ttc/Gtc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524435	44524435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	110	278	0	ENST00000291552.4:c.122C>T	p.Thr41Met	p.T41M	ENST00000291552	NM_006758.2	41	aCg/aTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180555	56180555	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	195	380	0	ENST00000399503.3:c.3884del	p.Ile1295LysfsTer3	p.I1295Kfs*3	ENST00000399503	NM_005921.1	1295	aTa/aa																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115269609	115269609	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	69	733	0	ENST00000438362.2:c.1597G>T	p.Asp533Tyr	p.D533Y	ENST00000438362	NM_001242891.1	533	Gat/Tat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0042337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	70	314	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114140	115114159	+	frameshift_variant	Frame_Shift_Del	DEL	AGTGGAGGCGGCTGGAGAAG	AGTGGAGGCGGCTGGAGAAG	-			P-0042337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	53	466	0	ENST00000257566.3:c.1058_1077del	p.Ser353CysfsTer15	p.S353Cfs*15	ENST00000257566	NM_016569.3	353	tCTTCTCCAGCCGCCTCCACT/t																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	170	375	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0042512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	100	668	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0042512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	353	566	0	ENST00000269305.4:c.993+2T>C		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
CD274	29126	MSKCC	GRCh37	9	5462929	5462929	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146495642		P-0042512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	138	318	0	ENST00000381577.3:c.490G>A	p.Glu164Lys	p.E164K	ENST00000381577	NM_014143.3	164	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175758	112175759	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATTTTGC			P-0042512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	77	317	0	ENST00000257430.4:c.4470_4477dup	p.Thr1493IlefsTer17	p.T1493Ifs*17	ENST00000257430	NM_000038.5	1489	-/CATTTTGC																																																																															
KDR	3791	MSKCC	GRCh37	4	55961059	55961059	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs530419081		P-0042656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	54	304	0	ENST00000263923.4:c.2881C>T	p.Arg961Trp	p.R961W	ENST00000263923	NM_002253.2	961	Cgg/Tgg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0042656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	427	220	0	ENST00000329236.7:c.1459+1G>A		p.X487_splice	ENST00000329236	NM_001204466.1	487																																																																																
TP53	7157	MSKCC	GRCh37	17	7577567	7577568	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0042656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	346	327	0	ENST00000269305.4:c.713_714del	p.Cys238Ter	p.C238*	ENST00000269305	NM_001126112.2	238	tGT/t																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7983992	7983992	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769882996		P-0042656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	166	212	0	ENST00000319144.4:c.634G>A	p.Val212Ile	p.V212I	ENST00000319144	NM_001139.2	212	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112174595	112174596	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0042656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	192	138	0	ENST00000257430.4:c.3305dup	p.Tyr1102Ter	p.Y1102*	ENST00000257430	NM_000038.5	1102	tac/tAac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	116	328	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0042665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	136	563	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	16	108	0	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	163	761	0	ENST00000374672.4:c.1225A>C	p.Lys409Gln	p.K409Q	ENST00000374672	NM_004235.4	409	Aag/Cag																																																																															
TERT	7015	MSKCC	GRCh37	5	1293661	1293661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	108	642	0	ENST00000310581.5:c.1340G>A	p.Arg447His	p.R447H	ENST00000310581	NM_198253.2	447	cGc/cAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884563	151884563	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0042665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	53	267	0	ENST00000262189.6:c.4794-2A>T		p.X1598_splice	ENST00000262189	NM_170606.2	1598																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48584557	48584563	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCAGC	CCTCAGC	-			P-0042665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	102	372	0	ENST00000342988.3:c.731_737del	p.Pro244GlnfsTer90	p.P244Qfs*90	ENST00000342988	NM_005359.5	244	CCTCAGCca/ca																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	107	376	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	173	725	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244098	5244098	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs73545312		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	230	744	1	ENST00000357368.4:c.1384G>A	p.Val462Ile	p.V462I	ENST00000357368	NM_002850.3	462	Gtc/Atc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	97	394	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	310	523	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	219	836	1	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508389	106508389	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758375337		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	63	362	1	ENST00000359195.3:c.383C>T	p.Thr128Met	p.T128M	ENST00000359195	NM_002649.2	128	aCg/aTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160588	56160588	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	82	267	0	ENST00000399503.3:c.862C>T	p.Arg288Ter	p.R288*	ENST00000399503	NM_005921.1	288	Cga/Tga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	128	882	3	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	133	875	4	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	122	570	3	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
PARK2	5071	MSKCC	GRCh37	6	162394349	162394349	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137853054		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	82	357	0	ENST00000366898.1:c.719C>T	p.Thr240Met	p.T240M	ENST00000366898	NM_004562.2	240	aCg/aTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	120	504	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	100	497	4	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962854	2962854	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	207	785	2	ENST00000396946.4:c.2054del	p.Gly685AlafsTer31	p.G685Afs*31	ENST00000396946	NM_032415.4	685	gGc/gc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086032	16086032	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777508469		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	184	615	0	ENST00000281043.3:c.1208C>T	p.Thr403Met	p.T403M	ENST00000281043	NM_005378.4	403	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	120	570	4	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432067	121432067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	291	868	2	ENST00000257555.6:c.814C>T	p.Arg272Cys	p.R272C	ENST00000257555		272	Cgc/Tgc																																																																															
HGF	3082	MSKCC	GRCh37	7	81381567	81381567	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370760302		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	54	207	1	ENST00000222390.5:c.494C>T	p.Ser165Leu	p.S165L	ENST00000222390	NM_000601.4	165	tCg/tTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	163	608	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	156	715	7	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	208	831	5	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	117	472	5	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125832	47125832	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	86	245	2	ENST00000409792.3:c.5438del	p.Asn1813IlefsTer25	p.N1813Ifs*25	ENST00000409792	NM_014159.6	1813	aAt/at																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78681761	78681761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	246	714	1	ENST00000306801.3:c.469C>T	p.Arg157Trp	p.R157W	ENST00000306801	NM_020761.2	157	Cgg/Tgg																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2096132	2096133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs763525759		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	82	655	0	ENST00000219066.1:c.374dup	p.Val127GlyfsTer43	p.V127Gfs*43	ENST00000219066	NM_002528.5	125	cca/ccCa																																																																															
ERG	2078	MSKCC	GRCh37	21	39795352	39795352	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372598575		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	118	635	2	ENST00000288319.7:c.368G>A	p.Arg123His	p.R123H	ENST00000288319	NM_182918.3	123	cGc/cAc																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427691	72427691	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759180086		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	105	389	1	ENST00000477973.2:c.797C>T	p.Arg267Cys	p.R267C	ENST00000477973	NM_012234.5	267	Cgc/Tgc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280162	66280162	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	61	209	0	ENST00000273854.3:c.1528-1G>T		p.X510_splice	ENST00000273854	NM_004439.5	510																																																																																
RBM10	8241	MSKCC	GRCh37	X	47030467	47030469	+	intron_variant	Intron	DEL	GGC	GGC	-	rs781998738		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	255	801	16	ENST00000329236.7:c.201+1582_201+1584del		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
SESN2	83667	MSKCC	GRCh37	1	28599271	28599271	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1457528646		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	155	996	2	ENST00000253063.3:c.722del	p.Pro241GlnfsTer6	p.P241Qfs*6	ENST00000253063	NM_031459.4	239	agC/ag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155654	56155654	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746479827		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	119	387	0	ENST00000399503.3:c.746G>A	p.Arg249His	p.R249H	ENST00000399503	NM_005921.1	249	cGc/cAc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031170	11031170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	298	835	0	ENST00000327064.4:c.1255C>T	p.Arg419Trp	p.R419W	ENST00000327064	NM_199141.1	419	Cgg/Tgg																																																																															
NBN	4683	MSKCC	GRCh37	8	90971011	90971011	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777259845		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	32	385	1	ENST00000265433.3:c.1066G>A	p.Ala356Thr	p.A356T	ENST00000265433	NM_002485.4	356	Gcc/Acc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223487	53223487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	33	625	2	ENST00000375401.3:c.3872G>A	p.Arg1291His	p.R1291H	ENST00000375401	NM_004187.3	1291	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984828	72984828	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	188	593	0	ENST00000268489.5:c.2756del	p.Gly919AlafsTer9	p.G919Afs*9	ENST00000268489	NM_006885.3	919	gGc/gc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39250080	39250080	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	100	534	0	ENST00000402219.2:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000402219	NM_005633.3	497	Cga/Tga																																																																															
RECQL	5965	MSKCC	GRCh37	12	21627910	21627910	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1176731657		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	81	404	0	ENST00000421138.2:c.1220G>A	p.Arg407Gln	p.R407Q	ENST00000421138		407	cGa/cAa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905174	50905175	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	110	1004	0	ENST00000440232.2:c.461dup	p.Gly155TrpfsTer9	p.G155Wfs*9	ENST00000440232	NM_002691.3	152	-/C																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212443	36212443	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	234	809	0	ENST00000222270.7:c.2194C>T	p.Gln732Ter	p.Q732*	ENST00000222270	NM_014727.1	732	Cag/Tag																																																																															
RRAS	6237	MSKCC	GRCh37	19	50143282	50143282	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	64	188	0	ENST00000246792.3:c.74del	p.Pro25ArgfsTer21	p.P25Rfs*21	ENST00000246792	NM_006270.3	25	cCg/cg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573564	48573564	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	54	310	1	ENST00000342988.3:c.153del	p.Asp52MetfsTer6	p.D52Mfs*6	ENST00000342988	NM_005359.5	50	Aaa/aa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53243872	53243872	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	200	707	0	ENST00000375401.3:c.1121C>T	p.Ala374Val	p.A374V	ENST00000375401	NM_004187.3	374	gCg/gTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260374	16260374	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	82	523	0	ENST00000375759.3:c.7639A>G	p.Thr2547Ala	p.T2547A	ENST00000375759	NM_015001.2	2547	Aca/Gca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023990	27023992	+	inframe_deletion	In_Frame_Del	DEL	AGC	AGC	-			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	18	78	0	ENST00000324856.7:c.1099_1101del	p.Ser367del	p.S367del	ENST00000324856	NM_006015.4	366	AGC/-																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106730	27106730	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773818181		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	167	670	0	ENST00000324856.7:c.6341C>T	p.Pro2114Leu	p.P2114L	ENST00000324856	NM_006015.4	2114	cCg/cTg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45799195	45799195	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	35	648	0	ENST00000372115.3:c.196T>G	p.Ser66Ala	p.S66A	ENST00000372115	NM_001048171.1	66	Tct/Gct																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983031	201983031	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	265	851	0	ENST00000359651.3:c.880A>G	p.Lys294Glu	p.K294E	ENST00000359651		294	Aag/Gag																																																																															
RET	5979	MSKCC	GRCh37	10	43620366	43620366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758191409		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	175	518	1	ENST00000355710.3:c.2975C>T	p.Pro992Leu	p.P992L	ENST00000355710	NM_020975.4	992	cCg/cTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70446281	70446281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1471278863		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	168	560	1	ENST00000373644.4:c.5221C>T	p.Arg1741Cys	p.R1741C	ENST00000373644	NM_030625.2	1741	Cgc/Tgc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741690	17741690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	205	470	1	ENST00000250003.3:c.361C>T	p.Arg121Cys	p.R121C	ENST00000250003	NM_002478.4	121	Cgc/Tgc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939250	71939250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	223	736	1	ENST00000298229.2:c.199C>T	p.His67Tyr	p.H67Y	ENST00000298229	NM_001567.3	67	Cac/Tac																																																																															
BIRC3	330	MSKCC	GRCh37	11	102201815	102201816	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	128	427	0	ENST00000263464.3:c.1170dup	p.Ser391Ter	p.S391*	ENST00000263464	NM_001165.4	389	-/T																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245748	46245748	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1273340081		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	126	403	0	ENST00000334344.6:c.3842G>T	p.Gly1281Val	p.G1281V	ENST00000334344	NM_152641.2	1281	gGg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49442932	49442932	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886049484		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	235	736	2	ENST00000301067.7:c.3976C>T	p.Arg1326Trp	p.R1326W	ENST00000301067	NM_003482.3	1326	Cgg/Tgg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041261	29041261	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	82	364	0	ENST00000282397.4:c.167A>G	p.Glu56Gly	p.E56G	ENST00000282397	NM_002019.4	56	gAa/gGa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73348112	73348112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	87	407	0	ENST00000377767.4:c.1073G>A	p.Gly358Asp	p.G358D	ENST00000377767	NM_014953.3	358	gGc/gAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436128	110436128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	126	849	2	ENST00000375856.3:c.2273G>A	p.Gly758Asp	p.G758D	ENST00000375856	NM_003749.2	758	gGc/gAc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560340	95560340	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	78	458	0	ENST00000343455.3:c.5249T>C	p.Val1750Ala	p.V1750A	ENST00000343455	NM_177438.2	1750	gTa/gCa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724465	43724465	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	270	889	0	ENST00000382044.4:c.3602T>C	p.Val1201Ala	p.V1201A	ENST00000382044	NM_001141980.1	1201	gTt/gCt																																																																															
CD276	80381	MSKCC	GRCh37	15	73996030	73996030	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs543666880		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	228	837	2	ENST00000318443.5:c.764C>T	p.Pro255Leu	p.P255L	ENST00000318443	NM_001024736.1	255	cCg/cTg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78897439	78897439	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1232044935		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	125	777	0	ENST00000306801.3:c.2774G>A	p.Arg925Gln	p.R925Q	ENST00000306801	NM_020761.2	925	cGg/cAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222792	5222792	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754813198		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	173	382	1	ENST00000357368.4:c.3011C>T	p.Thr1004Met	p.T1004M	ENST00000357368	NM_002850.3	1004	aCg/aTg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313355	30313355	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	146	583	0	ENST00000262643.3:c.955T>C	p.Tyr319His	p.Y319H	ENST00000262643	NM_001238.2	319	Tat/Cat																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792331	33792331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	69	834	2	ENST00000498907.2:c.990G>T	p.Gln330His	p.Q330H	ENST00000498907	NM_004364.3	330	caG/caT																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46574158	46574158	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	162	731	0	ENST00000263734.3:c.173G>C	p.Arg58Pro	p.R58P	ENST00000263734	NM_001430.4	58	cGa/cCa																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169953079	169953079	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs755677529		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	144	510	0	ENST00000295797.4:c.163C>T	p.Arg55Ter	p.R55*	ENST00000295797	NM_002740.5	55	Cga/Tga																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31508799	31508799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	196	630	1	ENST00000344624.3:c.1516G>A	p.Ala506Thr	p.A506T	ENST00000344624		506	Gca/Aca																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873582	35873582	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	39	182	0	ENST00000303115.3:c.538C>A	p.His180Asn	p.H180N	ENST00000303115	NM_002185.3	180	Cat/Aat																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26021045	26021045	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs561395578		P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	111	381	0	ENST00000357647.3:c.328C>A	p.Leu110Met	p.L110M	ENST00000357647	NM_003529.2	110	Ctg/Atg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32164717	32164717	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	212	682	0	ENST00000375023.3:c.5185del	p.Ala1729ProfsTer16	p.A1729Pfs*16	ENST00000375023	NM_004557.3	1729	Gcc/cc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188411	32188411	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	118	512	0	ENST00000375023.3:c.930C>A	p.Asp310Glu	p.D310E	ENST00000375023	NM_004557.3	310	gaC/gaA																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93964416	93964416	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	106	477	0	ENST00000369303.4:c.2481G>A	p.Trp827Ter	p.W827*	ENST00000369303	NM_004440.3	827	tgG/tgA																																																																															
RHEB	6009	MSKCC	GRCh37	7	151188083	151188083	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	81	397	0	ENST00000262187.5:c.70A>G	p.Ile24Val	p.I24V	ENST00000262187	NM_005614.3	24	Att/Gtt																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29207684	29207684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	111	268	0	ENST00000240100.2:c.112G>A	p.Gly38Arg	p.G38R	ENST00000240100	NM_001394.6	38	Ggg/Agg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417476	139417476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	323	729	1	ENST00000277541.6:c.568C>T	p.Arg190Cys	p.R190C	ENST00000277541	NM_017617.3	190	Cgc/Tgc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045902	47045902	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	157	704	1	ENST00000329236.7:c.2465del	p.Gly822ValfsTer24	p.G822Vfs*24	ENST00000329236	NM_001204466.1	821	ctG/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0042681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	175	1001	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519971		P-0042681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	54	483	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112175861	112175862	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0042681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	14	223	0	ENST00000257430.4:c.4571_4572del	p.Ile1524AsnfsTer8	p.I1524Nfs*8	ENST00000257430	NM_000038.5	1524	ATa/a																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149509338	149509349	+	inframe_deletion	In_Frame_Del	DEL	CCTCCTGCGTGT	CCTCCTGCGTGT	-			P-0042681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	46	563	0	ENST00000261799.4:c.1550_1561del	p.Asp517_Glu520del	p.D517_E520del	ENST00000261799	NM_002609.3	517	gACACGCAGGAGGtc/gtc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0042704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	31	389	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178937422	178937422	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	28	279	0	ENST00000263967.3:c.1810T>C	p.Cys604Arg	p.C604R	ENST00000263967	NM_006218.2	604	Tgt/Cgt																																																																															
CDH1	999	MSKCC	GRCh37	16	68772234	68772235	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	51	815	0	ENST00000261769.5:c.85dup	p.His29ProfsTer5	p.H29Pfs*5	ENST00000261769	NM_004360.3	28	tgc/tgCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	86	491	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579716	7579716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1192416464		P-0042715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	75	874	0	ENST00000269305.4:c.80del	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	27	cCt/ct																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123263350	123263350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	58	611	0	ENST00000358487.5:c.1393G>A	p.Glu465Lys	p.E465K	ENST00000358487	NM_000141.4	465	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578410	7578410	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	97	702	0	ENST00000269305.4:c.520A>T	p.Arg174Trp	p.R174W	ENST00000269305	NM_001126112.2	174	Agg/Tgg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98238339	98238339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753240797		P-0042716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	47	514	1	ENST00000331920.6:c.1705G>A	p.Ala569Thr	p.A569T	ENST00000331920	NM_000264.3	569	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7577531	7577531	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	131	720	1	ENST00000269305.4:c.750del	p.Ile251SerfsTer94	p.I251Sfs*94	ENST00000269305	NM_001126112.2	250	ccC/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	165	290	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0042893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	122	289	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0042893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	57	435	1	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339111	65339111	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	55	383	1	ENST00000342505.4:c.425del	p.Lys142ArgfsTer26	p.K142Rfs*26	ENST00000342505	NM_002227.2	142	aAg/ag																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45860581	45860581	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs531021258		P-0042893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	80	725	1	ENST00000391945.4:c.1426G>A	p.Val476Ile	p.V476I	ENST00000391945	NM_000400.3	476	Gtc/Atc																																																																															
TET2	54790	MSKCC	GRCh37	4	106157834	106157834	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs4145756		P-0042893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	23	252	0	ENST00000380013.4:c.2735C>T	p.Ala912Val	p.A912V	ENST00000380013	NM_001127208.2	912	gCg/gTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70342602	70342602	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1268612180		P-0042893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	108	483	0	ENST00000374080.3:c.1363C>T	p.Arg455Trp	p.R455W	ENST00000374080		455	Cgg/Tgg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31395624	31395624	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756972254		P-0042893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	137	541	0	ENST00000328111.2:c.2477G>A	p.Arg826His	p.R826H	ENST00000328111	NM_006892.3	826	cGc/cAc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37089123	37089125	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs1485223012		P-0042893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	80	323	0	ENST00000231790.2:c.1852_1854del	p.Lys618del	p.K618del	ENST00000231790	NM_000249.3	615	ctGAAg/ctg																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246078896	246078896	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs987211168		P-0042893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	150	468	0	ENST00000388985.4:c.749G>A	p.Arg250Gln	p.R250Q	ENST00000388985		250	cGg/cAg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060845	38060845	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	81	671	0	ENST00000250448.2:c.1144del	p.His382ThrfsTer7	p.H382Tfs*7	ENST00000250448	NM_004496.3	382	Cac/ac																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724658	112724659	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0042893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	51	361	0	ENST00000369452.4:c.542_543del	p.Leu181GlnfsTer9	p.L181Qfs*9	ENST00000369452	NM_007373.3	181	cTG/c																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427309	427309	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	52	394	0	ENST00000399788.2:c.2860C>T	p.Arg954Ter	p.R954*	ENST00000399788	NM_001042603.1	954	Cga/Tga																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729202	66729202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	43	459	0	ENST00000307102.5:c.410G>A	p.Gly137Asp	p.G137D	ENST00000307102	NM_002755.3	137	gGc/gAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911508	134911508	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	57	463	0	ENST00000398015.3:c.1973C>A	p.Ser658Ter	p.S658*	ENST00000398015	NM_004441.4	658	tCg/tAg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508966	106508966	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	97	401	0	ENST00000359195.3:c.960G>C	p.Lys320Asn	p.K320N	ENST00000359195	NM_002649.2	320	aaG/aaC																																																																															
CDH1	999	MSKCC	GRCh37	16	68853260	68853260	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	AC			P-0042893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	159	488	0	ENST00000261769.5:c.1643delinsAC	p.Leu548HisfsTer7	p.L548Hfs*7	ENST00000261769	NM_004360.3	548	cTg/cACg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	15	499	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	126	380	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152860121	152860121	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782206940		P-0043039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	180	698	3	ENST00000406277.2:c.307G>A	p.Gly103Ser	p.G103S	ENST00000406277	NM_152274.4	103	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579462	7579462	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	255	719	0	ENST00000269305.4:c.225del	p.Ala76HisfsTer47	p.A76Hfs*47	ENST00000269305	NM_001126112.2	75	ccT/cc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098937	178098938	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAA			P-0043039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	96	318	0	ENST00000397062.3:c.107_108insTTT	p.Val36_Phe37insLeu	p.V36_F37insL	ENST00000397062	NM_006164.4	36	gta/gtTTTa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231773	36231773	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	8	464	0	ENST00000300305.3:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000300305		204	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578249	7578250	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	45	541	0	ENST00000269305.4:c.599dup	p.Asn200LysfsTer9	p.N200Kfs*9	ENST00000269305	NM_001126112.2	200	aat/aaAt																																																																															
RB1	5925	MSKCC	GRCh37	13	48921968	48921968	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs587778826		P-0043090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	24	271	0	ENST00000267163.4:c.508G>T	p.Glu170Ter	p.E170*	ENST00000267163	NM_000321.2	170	Gaa/Taa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260746	16260746	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	55	464	0	ENST00000375759.3:c.8011C>A	p.Pro2671Thr	p.P2671T	ENST00000375759	NM_015001.2	2671	Ccc/Acc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424151	49424151	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	62	569	0	ENST00000301067.7:c.13911G>C	p.Lys4637Asn	p.K4637N	ENST00000301067	NM_003482.3	4637	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0043130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	216	634	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0043130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	58	411	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0043130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	35	206	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554467	63554468	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGT			P-0043130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	331	636	0	ENST00000307078.5:c.269_271dup	p.Asp90dup	p.D90dup	ENST00000307078	NM_004655.3	90	ggt/gACGgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	30	334	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs587781642		P-0043252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	95	617	0	ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438225	110438225	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	11	118	0	ENST00000375856.3:c.176A>G	p.Glu59Gly	p.E59G	ENST00000375856	NM_003749.2	59	gAg/gGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0043331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	1116	729	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175360	112175360	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	411	320	0	ENST00000257430.4:c.4069G>T	p.Gly1357Ter	p.G1357*	ENST00000257430	NM_000038.5	1357	Gga/Tga																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434820	110434820	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	620	603	0	ENST00000375856.3:c.3581C>G	p.Pro1194Arg	p.P1194R	ENST00000375856	NM_003749.2	1194	cCt/cGt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95579460	95579460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	167	426	0	ENST00000343455.3:c.2009C>T	p.Pro670Leu	p.P670L	ENST00000343455	NM_177438.2	670	cCa/cTa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81929465	81929465	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766133588		P-0043331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	768	582	2	ENST00000359376.3:c.1126C>T	p.Arg376Trp	p.R376W	ENST00000359376	NM_002661.3	376	Cgg/Tgg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913237		P-0043333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	89	502	0	ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt																																																																															
RET	5979	MSKCC	GRCh37	10	43617416	43617416	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	77	596	0	ENST00000355710.3:c.2753T>G	p.Met918Arg	p.M918R	ENST00000355710	NM_020975.4	918	aTg/aGg																																																																															
MGA	23269	MSKCC	GRCh37	15	42058827	42058827	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	91	465	0	ENST00000219905.7:c.8547C>A	p.Ser2849Arg	p.S2849R	ENST00000219905	NM_001164273.1	2849	agC/agA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs985033810		P-0043333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	130	666	2	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																															
AXL	558	MSKCC	GRCh37	19	41727880	41727880	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756018335		P-0043333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	157	806	0	ENST00000301178.4:c.505G>A	p.Val169Met	p.V169M	ENST00000301178	NM_021913.4	169	Gtg/Atg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620674	52620674	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	93	403	0	ENST00000394830.3:c.3079C>T	p.Arg1027Ter	p.R1027*	ENST00000394830	NM_018313.4	1027	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0043333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	61	542	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0043333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	97	442	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	55	323	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																															
CCND3	896	MSKCC	GRCh37	6	41903836	41903836	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs540997482		P-0043333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	95	636	0	ENST00000372991.4:c.721C>T	p.Arg241Trp	p.R241W	ENST00000372991	NM_001760.3	241	Cgg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0043333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	102	462	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0043377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	246	780	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110171	3110171	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1335558363		P-0043377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	75	556	0	ENST00000078429.4:c.161C>T	p.Thr54Met	p.T54M	ENST00000078429	NM_002067.2	54	aCg/aTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289642	15289642	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	277	804	3	ENST00000263388.2:c.3829T>A	p.Cys1277Ser	p.C1277S	ENST00000263388	NM_000435.2	1277	Tgt/Agt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851885	134851885	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	58	462	0	ENST00000398015.3:c.1291C>T	p.Gln431Ter	p.Q431*	ENST00000398015	NM_004441.4	431	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0043398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	18	527	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	38	438	0	ENST00000346208.3:c.1275dup	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575362	64575362	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs794728622		P-0043517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	52	516	0	ENST00000337652.1:c.669+1G>T		p.X223_splice	ENST00000337652	NM_130803.2	223																																																																																
SPEN	23013	MSKCC	GRCh37	1	16256469	16256472	+	frameshift_variant	Frame_Shift_Del	DEL	ACAG	ACAG	-			P-0043517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	43	582	0	ENST00000375759.3:c.3735_3738del	p.Tyr1245Ter	p.Y1245*	ENST00000375759	NM_015001.2	1245	tACAGa/ta																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262414	16262414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	26	359	0	ENST00000375759.3:c.9679C>T	p.Gln3227Ter	p.Q3227*	ENST00000375759	NM_015001.2	3227	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0043528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	15	243	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0043558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	369	765	2	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245447	153245447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	310	664	0	ENST00000281708.4:c.1744T>C	p.Ser582Pro	p.S582P	ENST00000281708	NM_033632.3	582	Tcg/Ccg																																																																															
APC	324	MSKCC	GRCh37	5	112175770	112175770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	69	377	1	ENST00000257430.4:c.4480del	p.Glu1494LysfsTer13	p.E1494Kfs*13	ENST00000257430	NM_000038.5	1493	acG/ac																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518358	204518358	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs557473906		P-0043558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	42	559	0	ENST00000367182.3:c.1021C>T	p.Leu341Phe	p.L341F	ENST00000367182	NM_001278516.1	341	Ctc/Ttc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885006	111885006	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1252209646		P-0043558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	238	733	0	ENST00000341259.2:c.1004C>G	p.Thr335Arg	p.T335R	ENST00000341259	NM_005475.2	335	aCa/aGa																																																																															
RB1	5925	MSKCC	GRCh37	13	48939051	48939051	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	39	328	0	ENST00000267163.4:c.883A>C	p.Asn295His	p.N295H	ENST00000267163	NM_000321.2	295	Aat/Cat																																																																															
APC	324	MSKCC	GRCh37	5	112173806	112173806	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	124	409	0	ENST00000257430.4:c.2515G>T	p.Gly839Ter	p.G839*	ENST00000257430	NM_000038.5	839	Gga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	30	395	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	99	617	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78897444	78897444	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746953724		P-0043586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	93	656	0	ENST00000306801.3:c.2779C>T	p.Arg927Trp	p.R927W	ENST00000306801	NM_020761.2	927	Cgg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	88	303	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	447	628	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	132	296	2	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	118	374	1	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55143617	55143617	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs878854825		P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	122	367	0	ENST00000257290.5:c.1849C>T	p.Arg617Trp	p.R617W	ENST00000257290	NM_006206.4	617	Cgg/Tgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972893	32972893	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	31	221	1	ENST00000380152.3:c.10248del	p.Lys3416AsnfsTer11	p.K3416Nfs*11	ENST00000380152		3415	Aaa/aa																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	68	282	5	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	120	335	0	ENST00000447079.4:c.4382del	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524933	187524933	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749223648		P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	180	562	0	ENST00000441802.2:c.10747G>A	p.Asp3583Asn	p.D3583N	ENST00000441802	NM_005245.3	3583	Gac/Aac																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736165	204736166	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	105	330	1	ENST00000302823.3:c.529dup	p.Tyr177LeufsTer2	p.Y177Lfs*2	ENST00000302823	NM_005214.4	174	-/T																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528611	8528611	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201846121		P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	46	307	0	ENST00000356435.5:c.521G>A	p.Arg174His	p.R174H	ENST00000356435		174	cGt/cAt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933400	39933400	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	224	717	0	ENST00000378444.4:c.1199del	p.Gly400AlafsTer42	p.G400Afs*42	ENST00000378444	NM_001123385.1	400	gGc/gc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026852	48026852	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376220212		P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	45	315	0	ENST00000234420.5:c.1730G>A	p.Arg577His	p.R577H	ENST00000234420	NM_000179.2	577	cGc/cAc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138915	64138915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	108	448	3	ENST00000334205.4:c.2287del	p.Arg763AlafsTer21	p.R763Afs*21	ENST00000334205	NM_003942.2	761	gCc/gc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41408878	41408878	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768757373		P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	182	452	1	ENST00000373198.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000373198	NM_133170.3	183	cGg/cAg																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366679	40366679	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs777173419		P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	159	435	0	ENST00000397332.2:c.518C>G	p.Ala173Gly	p.A173G	ENST00000397332	NM_001033082.2	173	gCc/gGc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	127	652	2	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1383	230	799	6	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214871	36214871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1140	253	834	5	ENST00000222270.7:c.3302del	p.Pro1101LeufsTer81	p.P1101Lfs*81	ENST00000222270	NM_014727.1	1099	ggC/gg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686962	37686962	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	207	454	1	ENST00000447079.4:c.3871del	p.Gln1291ArgfsTer3	p.Q1291Rfs*3	ENST00000447079	NM_015083.1	1289	gCc/gc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40757468	40757468	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	140	552	0	ENST00000373198.4:c.2830G>A	p.Asp944Asn	p.D944N	ENST00000373198	NM_133170.3	944	Gac/Aac																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793676	89793677	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	40	215	0	ENST00000336032.3:c.752dup	p.Pro252AlafsTer3	p.P252Afs*3	ENST00000336032	NM_006813.2	249	gaa/gAaa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799180	88799180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	150	541	3	ENST00000360948.2:c.205G>A	p.Ala69Thr	p.A69T	ENST00000360948	NM_001012338.2	69	Gcc/Acc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213243	39213243	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	226	803	7	ENST00000402219.2:c.3724del	p.Ser1242ValfsTer37	p.S1242Vfs*37	ENST00000402219	NM_005633.3	1242	Agt/gt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112323	115112324	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-	rs1381943852		P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	74	90	0	ENST00000257566.3:c.1416_1417del	p.Leu473ProfsTer218	p.L473Pfs*218	ENST00000257566	NM_016569.3	472	gcGCtc/gctc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821344	72821344	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	121	383	1	ENST00000268489.5:c.10831del	p.His3611ThrfsTer83	p.H3611Tfs*83	ENST00000268489	NM_006885.3	3611	Cac/ac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32971138	32971138	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397507432		P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	45	398	0	ENST00000380152.3:c.9605C>T	p.Pro3202Leu	p.P3202L	ENST00000380152		3202	cCg/cTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7117297	7117297	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145697152		P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	280	684	0	ENST00000302850.5:c.3919G>A	p.Glu1307Lys	p.E1307K	ENST00000302850	NM_000208.2	1307	Gag/Aag																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22162025	22162025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	95	456	0	ENST00000215832.6:c.230G>A	p.Arg77His	p.R77H	ENST00000215832	NM_002745.4	77	cGc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259393	16259393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	90	332	0	ENST00000375759.3:c.6658G>A	p.Gly2220Ser	p.G2220S	ENST00000375759	NM_015001.2	2220	Ggc/Agc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57478757	57478757	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	136	365	0	ENST00000371085.3:c.348del	p.Val117TrpfsTer16	p.V117Wfs*16	ENST00000371085	NM_000516.4	115	Ccc/cc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28893641	28893641	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751031012		P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	96	388	0	ENST00000282397.4:c.3205G>A	p.Glu1069Lys	p.E1069K	ENST00000282397	NM_002019.4	1069	Gaa/Aaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864679	68864679	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	64	281	0	ENST00000288368.4:c.50T>C	p.Leu17Pro	p.L17P	ENST00000288368	NM_024870.2	17	cTg/cCg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105920	27105920	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	162	493	0	ENST00000324856.7:c.5531G>T	p.Trp1844Leu	p.W1844L	ENST00000324856	NM_006015.4	1844	tGg/tTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936083	71936083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	37	47	0	ENST00000298229.2:c.55C>T	p.Pro19Ser	p.P19S	ENST00000298229	NM_001567.3	19	Ccc/Tcc																																																																															
ATM	472	MSKCC	GRCh37	11	108150261	108150261	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147112946		P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	19	319	1	ENST00000278616.4:c.3328G>A	p.Ala1110Thr	p.A1110T	ENST00000278616	NM_000051.3	1110	Gca/Aca																																																																															
KDM5A	5927	MSKCC	GRCh37	12	464398	464398	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	54	436	1	ENST00000399788.2:c.796C>T	p.Arg266Ter	p.R266*	ENST00000399788	NM_001042603.1	266	Cga/Tga																																																																															
AKT1	207	MSKCC	GRCh37	14	105246457	105246457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774836044		P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	216	687	1	ENST00000349310.3:c.143G>A	p.Arg48His	p.R48H	ENST00000349310	NM_001014432.1	48	cGt/cAt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43762061	43762061	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	107	495	0	ENST00000382044.4:c.1384del	p.Ser462LeufsTer29	p.S462Lfs*29	ENST00000382044	NM_001141980.1	462	Tct/ct																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14026104	14026104	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	28	139	0	ENST00000311895.7:c.1069del	p.Ile357TyrfsTer19	p.I357Yfs*19	ENST00000311895	NM_005236.2	355	gAa/ga																																																																															
RARA	5914	MSKCC	GRCh37	17	38510617	38510617	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	259	757	0	ENST00000254066.5:c.871A>G	p.Thr291Ala	p.T291A	ENST00000254066	NM_000964.3	291	Acc/Gcc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222772	5222772	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs770446171		P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	165	439	0	ENST00000357368.4:c.3031C>T	p.Arg1011Ter	p.R1011*	ENST00000357368	NM_002850.3	1011	Cga/Tga																																																																															
JAK3	3718	MSKCC	GRCh37	19	17952207	17952207	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1250190863		P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	275	630	0	ENST00000458235.1:c.1133G>A	p.Gly378Asp	p.G378D	ENST00000458235	NM_000215.3	378	gGc/gAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214143	36214143	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	282	864	0	ENST00000222270.7:c.2969T>C	p.Phe990Ser	p.F990S	ENST00000222270	NM_014727.1	990	tTt/tCt																																																																															
AKT2	208	MSKCC	GRCh37	19	40742001	40742001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	248	718	0	ENST00000392038.2:c.971A>G	p.Asp324Gly	p.D324G	ENST00000392038	NM_001626.4	324	gAc/gGc																																																																															
CENPA	1058	MSKCC	GRCh37	2	27015101	27015101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	158	369	0	ENST00000335756.4:c.203G>A	p.Ser68Asn	p.S68N	ENST00000335756	NM_001809.3	68	aGc/aAc																																																																															
ALK	238	MSKCC	GRCh37	2	30143114	30143114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	196	669	1	ENST00000389048.3:c.412G>A	p.Ala138Thr	p.A138T	ENST00000389048	NM_004304.4	138	Gcc/Acc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99170891	99170891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	232	692	0	ENST00000074304.5:c.1520C>T	p.Ala507Val	p.A507V	ENST00000074304	NM_001134224.1	507	gCc/gTc																																																																															
BARD1	580	MSKCC	GRCh37	2	215593610	215593610	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	95	324	0	ENST00000260947.4:c.2124G>T	p.Lys708Asn	p.K708N	ENST00000260947	NM_000465.2	708	aaG/aaT																																																																															
BCL6	604	MSKCC	GRCh37	3	187449623	187449623	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	135	402	0	ENST00000232014.4:c.257T>G	p.Leu86Arg	p.L86R	ENST00000232014	NM_001130845.1	86	cTc/cGc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518870	187518870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	135	430	0	ENST00000441802.2:c.12334G>T	p.Val4112Phe	p.V4112F	ENST00000441802	NM_005245.3	4112	Gtt/Ttt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295262	1295263	+	upstream_gene_variant	5'Flank	INS	-	-	G			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	87	317	0				ENST00000310581	NM_198253.2																																																																																	
DROSHA	29102	MSKCC	GRCh37	5	31526621	31526621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	222	612	1	ENST00000344624.3:c.419G>A	p.Gly140Asp	p.G140D	ENST00000344624		140	gGc/gAc																																																																															
MSH3	4437	MSKCC	GRCh37	5	80088578	80088578	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	26	214	0	ENST00000265081.6:c.2570T>A	p.Ile857Asn	p.I857N	ENST00000265081	NM_002439.4	857	aTt/aAt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911192	29911192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	321	641	0	ENST00000376809.5:c.491C>T	p.Ala164Val	p.A164V	ENST00000376809	NM_002116.7	164	gCt/gTt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323154	31323154	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	520	700	0	ENST00000412585.2:c.835C>T	p.Gln279Ter	p.Q279*	ENST00000412585	NM_005514.6	279	Cag/Tag																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815793	32815793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	608	746	3	ENST00000354258.4:c.1823C>T	p.Ala608Val	p.A608V	ENST00000354258	NM_000593.5	608	gCt/gTt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33286994	33286994	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	308	469	0	ENST00000374542.5:c.1943A>G	p.Tyr648Cys	p.Y648C	ENST00000374542	NM_001141970.1	648	tAt/tGt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528418	157528418	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	214	624	0	ENST00000346085.5:c.6146del	p.Leu2049TrpfsTer50	p.L2049Wfs*50	ENST00000346085	NM_020732.3	2048	aTt/at																																																																															
MET	4233	MSKCC	GRCh37	7	116339281	116339281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80256822		P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	205	346	0	ENST00000397752.3:c.143C>T	p.Ala48Val	p.A48V	ENST00000397752	NM_000245.2	48	gCg/gTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21994239	21994239	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528789830		P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	225	554	1	ENST00000361570.3:c.215C>T	p.Thr72Met	p.T72M	ENST00000361570	NM_058195.3	72	aCg/aTg																																																																															
TEK	7010	MSKCC	GRCh37	9	27197507	27197507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	276	610	0	ENST00000380036.4:c.1819C>T	p.Pro607Ser	p.P607S	ENST00000380036	NM_000459.3	607	Ccc/Tcc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390930	139390930	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373874935		P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1389	310	895	1	ENST00000277541.6:c.7261G>A	p.Val2421Met	p.V2421M	ENST00000277541	NM_017617.3	2421	Gtg/Atg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006797	47006799	+	5_prime_UTR_variant	5'UTR	DEL	AGC	AGC	-			P-0043652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	255	705	0	ENST00000329236.7:c.-78_-76del		p.*26*	ENST00000329236	NM_001204466.1																																																																																	
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	34	248	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0043720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	189	528	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971194	21971194	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	709	270	0	ENST00000304494.5:c.164del	p.Gly55AlafsTer91	p.G55Afs*91	ENST00000304494	NM_000077.4	55	gGc/gc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44945136	44945137	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGTTAAA			P-0043720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	26	332	0	ENST00000377967.4:c.3467_3468insACAGTTAA	p.Asn1156LysfsTer5	p.N1156Kfs*5	ENST00000377967	NM_021140.2	1154	tca/tCAGTTAAAca																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986548	36986549	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	43	626	0	ENST00000354822.5:c.1140dup	p.Asn381GlufsTer58	p.N381Efs*58	ENST00000354822	NM_001079668.2	380	-/G																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	103	374	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775623976		P-0043928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	29	324	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0043928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	80	603	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148511205	148511205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	34	416	0	ENST00000320356.2:c.1697G>A	p.Arg566His	p.R566H	ENST00000320356	NM_004456.4	566	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0043943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	435	544	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0043943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	110	289	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714370	40714370	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs956451753		P-0043943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	204	386	0	ENST00000373198.4:c.4027C>T	p.Arg1343Trp	p.R1343W	ENST00000373198	NM_133170.3	1343	Cgg/Tgg																																																																															
TP63	8626	MSKCC	GRCh37	3	189612212	189612212	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764601563		P-0043943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	267	454	0	ENST00000264731.3:c.1964G>A	p.Arg655Gln	p.R655Q	ENST00000264731	NM_003722.4	655	cGa/cAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920430	114920430	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	287	457	0	ENST00000543371.1:c.1373del	p.Leu458TyrfsTer33	p.L458Yfs*33	ENST00000543371	NM_001198531.1	457	acT/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398280	25398281	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0043943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	146	339	0	ENST00000256078.4:c.38_39delinsAT	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGC/gAT																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978405	2978405	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370704955		P-0043943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	126	645	0	ENST00000396946.4:c.925C>T	p.Arg309Cys	p.R309C	ENST00000396946	NM_032415.4	309	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	29	176	0	ENST00000257430.4:c.3925del	p.Glu1309LysfsTer12	p.E1309Kfs*12	ENST00000257430	NM_000038.5	1309	Gaa/aa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577330	64577333	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0044029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	172	715	0	ENST00000337652.1:c.249_252del	p.Ile85SerfsTer33	p.I85Sfs*33	ENST00000337652	NM_130803.2	83	ctGTCT/ct																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245235	46245235	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753485118		P-0044029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	61	456	0	ENST00000334344.6:c.3329G>A	p.Gly1110Glu	p.G1110E	ENST00000334344	NM_152641.2	1110	gGa/gAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164127	47164127	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	53	267	1	ENST00000409792.3:c.1999del	p.Cys667ValfsTer3	p.C667Vfs*3	ENST00000409792	NM_014159.6	667	Tgt/gt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0044047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	118	348	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	106	228	0	ENST00000281708.4:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000281708	NM_033632.3	545	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057520006		P-0044047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	515	603	0	ENST00000269305.4:c.821T>A	p.Val274Asp	p.V274D	ENST00000269305	NM_001126112.2	274	gTt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	56	171	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																															
TP63	8626	MSKCC	GRCh37	3	189455576	189455576	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754361670		P-0044047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	54	412	0	ENST00000264731.3:c.110G>A	p.Arg37Gln	p.R37Q	ENST00000264731	NM_003722.4	37	cGa/cAa																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22153365	22153365	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	100	373	0	ENST00000215832.6:c.545G>C	p.Gly182Ala	p.G182A	ENST00000215832	NM_002745.4	182	gGg/gCg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38282046	38282046	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	330	579	0	ENST00000425967.3:c.1010C>A	p.Pro337His	p.P337H	ENST00000425967	NM_001174067.1	337	cCt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0044051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	393	507	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131977884	131977884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786203127		P-0044051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	82	223	0	ENST00000265335.6:c.3767G>A	p.Arg1256His	p.R1256H	ENST00000265335		1256	cGc/cAc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127640	64127640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	133	488	0	ENST00000334205.4:c.133G>A	p.Gly45Ser	p.G45S	ENST00000334205	NM_003942.2	45	Ggc/Agc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0044083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	108	464	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CBL	867	MSKCC	GRCh37	11	119148930	119148930	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs387906664		P-0044083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	11	393	1	ENST00000264033.4:c.1150T>C	p.Cys384Arg	p.C384R	ENST00000264033	NM_005188.3	384	Tgt/Cgt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475078	40475078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	144	541	0	ENST00000264657.5:c.1832G>A	p.Ser611Asn	p.S611N	ENST00000264657	NM_139276.2	611	aGt/aAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0044141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	16	391	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0044141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	78	825	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175096	112175097	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0044141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	16	157	0	ENST00000257430.4:c.3807_3808del	p.Ile1269MetfsTer6	p.I1269Mfs*6	ENST00000257430	NM_000038.5	1269	ATa/a																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105967	27105967	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	44	493	0	ENST00000324856.7:c.5578G>T	p.Glu1860Ter	p.E1860*	ENST00000324856	NM_006015.4	1860	Gag/Tag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224157	36224157	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	85	655	0	ENST00000222270.7:c.6707C>A	p.Pro2236Gln	p.P2236Q	ENST00000222270	NM_014727.1	2236	cCa/cAa																																																																															
MET	4233	MSKCC	GRCh37	7	116371734	116371734	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	25	297	0	ENST00000397752.3:c.1213A>G	p.Asn405Asp	p.N405D	ENST00000397752	NM_000245.2	405	Aat/Gat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	84	397	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0044171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	134	802	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0044171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	9	322	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912580		P-0044171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	37	330	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																															
RB1	5925	MSKCC	GRCh37	13	49030405	49030406	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	80	364	0	ENST00000267163.4:c.1881dup	p.Ala628CysfsTer25	p.A628Cfs*25	ENST00000267163	NM_000321.2	627	aat/aaTt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027166	48027166	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	50	414	0	ENST00000234420.5:c.2044T>C	p.Ser682Pro	p.S682P	ENST00000234420	NM_000179.2	682	Tct/Cct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	30	336	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	28	392	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	119	877	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519946		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	18	689	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	53	683	1	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649922	88649922	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	52	504	0	ENST00000372037.3:c.176del	p.Leu59Ter	p.L59*	ENST00000372037	NM_004329.2	57	ccT/cc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	119	347	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692981	89692982	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	60	483	0	ENST00000371953.3:c.469dup	p.Glu157GlyfsTer23	p.E157Gfs*23	ENST00000371953	NM_000314.4	155	-/G																																																																															
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	55	746	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	30	470	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518112	8518112	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs533774328		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	36	467	1	ENST00000356435.5:c.1279C>T	p.Arg427Ter	p.R427*	ENST00000356435		427	Cga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053023	180053023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	121	903	2	ENST00000261937.6:c.1267del	p.Gln423ArgfsTer70	p.Q423Rfs*70	ENST00000261937	NM_182925.4	423	Cag/ag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932492	39932492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	125	858	2	ENST00000378444.4:c.2107C>T	p.Pro703Ser	p.P703S	ENST00000378444	NM_001123385.1	703	Ccc/Tcc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56488225	56488225	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	53	609	1	ENST00000267101.3:c.1744G>T	p.Gly582Trp	p.G582W	ENST00000267101	NM_001982.3	582	Ggg/Tgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29661945	29661945	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854552		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	47	494	1	ENST00000358273.4:c.5902C>T	p.Arg1968Ter	p.R1968*	ENST00000358273	NM_001042492.2	1968	Cga/Tga																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905873	50905873	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756829126		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	94	887	0	ENST00000440232.2:c.845C>T	p.Thr282Met	p.T282M	ENST00000440232	NM_002691.3	282	aCg/aTg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	134	685	5	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs770248150		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	13	397	0	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																																																															
ALK	238	MSKCC	GRCh37	2	30142885	30142885	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766999851		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	65	854	3	ENST00000389048.3:c.641G>A	p.Arg214His	p.R214H	ENST00000389048	NM_004304.4	214	cGc/cAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98268793	98268793	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	53	591	1	ENST00000331920.6:c.290del	p.Asn97ThrfsTer20	p.N97Tfs*20	ENST00000331920	NM_000264.3	97	aAc/ac																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099080	157099080	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	18	137	0	ENST00000346085.5:c.17G>C	p.Gly6Ala	p.G6A	ENST00000346085	NM_020732.3	6	gGc/gCc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53250046	53250047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs782600511		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	92	654	0	ENST00000375401.3:c.202dup	p.Arg68ProfsTer7	p.R68Pfs*7	ENST00000375401	NM_004187.3	68	cga/cCga																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366129	15366129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1468704458		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	48	547	1	ENST00000263377.2:c.2026C>T	p.Arg676Trp	p.R676W	ENST00000263377	NM_058243.2	676	Cgg/Tgg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98212182	98212182	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371346118		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	36	398	0	ENST00000331920.6:c.3490G>A	p.Val1164Ile	p.V1164I	ENST00000331920	NM_000264.3	1164	Gtt/Att																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342743	87342743	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	41	497	0	ENST00000277120.3:c.1028A>G	p.His343Arg	p.H343R	ENST00000277120		343	cAc/cGc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95572555	95572555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	22	227	0	ENST00000343455.3:c.2810G>A	p.Arg937His	p.R937H	ENST00000343455	NM_177438.2	937	cGc/cAc																																																																															
AR	367	MSKCC	GRCh37	X	66937403	66937403	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs886039558		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	52	650	0	ENST00000374690.3:c.2257C>T	p.Arg753Ter	p.R753*	ENST00000374690	NM_000044.3	753	Cga/Tga																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025857	48025857	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1472949451		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	44	355	0	ENST00000234420.5:c.741del	p.Lys247AsnfsTer32	p.K247Nfs*32	ENST00000234420	NM_000179.2	245	atA/at																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	58	594	3	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1387	104	1121	2	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	128	627	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131403	17131403	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs758385503		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	66	783	0	ENST00000285071.4:c.49del	p.Arg17AlafsTer38	p.R17Afs*38	ENST00000285071	NM_144997.5	17	Cgc/gc																																																																															
NF1	4763	MSKCC	GRCh37	17	29661917	29661917	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	40	488	0	ENST00000358273.4:c.5878del	p.Cys1960AlafsTer19	p.C1960Afs*19	ENST00000358273	NM_001042492.2	1958	cgT/cg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11172947	11172947	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759011563		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	49	515	1	ENST00000361445.4:c.7328G>A	p.Arg2443Gln	p.R2443Q	ENST00000361445	NM_004958.3	2443	cGa/cAa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231449	5231449	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	61	892	1	ENST00000357368.4:c.2027del	p.Pro676ArgfsTer134	p.P676Rfs*134	ENST00000357368	NM_002850.3	676	cCg/cg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845190	151845190	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764910946		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	49	558	0	ENST00000262189.6:c.13822C>T	p.Arg4608Cys	p.R4608C	ENST00000262189	NM_170606.2	4608	Cgc/Tgc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395216	139395216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	76	970	0	ENST00000277541.6:c.5722G>A	p.Ala1908Thr	p.A1908T	ENST00000277541	NM_017617.3	1908	Gcc/Acc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3832793	3832793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	63	598	0	ENST00000262367.5:c.1465G>A	p.Gly489Arg	p.G489R	ENST00000262367	NM_004380.2	489	Gga/Aga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100171	27100171	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778051		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	47	583	0	ENST00000324856.7:c.3967C>T	p.Arg1323Cys	p.R1323C	ENST00000324856	NM_006015.4	1323	Cgc/Tgc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127670	64127670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1181	93	975	1	ENST00000334205.4:c.163G>A	p.Gly55Arg	p.G55R	ENST00000334205	NM_003942.2	55	Ggg/Agg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257665	16257665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	74	536	0	ENST00000375759.3:c.4930G>A	p.Val1644Ile	p.V1644I	ENST00000375759	NM_015001.2	1644	Gtc/Atc																																																																															
MPL	4352	MSKCC	GRCh37	1	43812526	43812526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	66	626	0	ENST00000372470.3:c.1229G>T	p.Trp410Leu	p.W410L	ENST00000372470	NM_005373.2	410	tGg/tTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70333092	70333092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	66	759	0	ENST00000373644.4:c.997G>T	p.Gly333Cys	p.G333C	ENST00000373644	NM_030625.2	333	Ggc/Tgc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903715	114903715	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	59	625	0	ENST00000543371.1:c.722del	p.Pro241ArgfsTer10	p.P241Rfs*10	ENST00000543371	NM_001198531.1	240	tCc/tc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77043827	77043827	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752626713		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	83	727	2	ENST00000356341.3:c.1499G>A	p.Arg500His	p.R500H	ENST00000356341	NM_002576.4	500	cGc/cAc																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981819	101981820	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	88	811	0	ENST00000282441.5:c.244dup	p.Gln82ProfsTer30	p.Q82Pfs*30	ENST00000282441	NM_001130145.2	80	-/C																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856145	111856145	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	65	398	0	ENST00000341259.2:c.196C>T	p.Gln66Ter	p.Q66*	ENST00000341259	NM_005475.2	66	Cag/Tag																																																																															
POLE	5426	MSKCC	GRCh37	12	133219169	133219169	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	58	806	0	ENST00000320574.5:c.4875G>T	p.Gln1625His	p.Q1625H	ENST00000320574	NM_006231.2	1625	caG/caT																																																																															
FLT3	2322	MSKCC	GRCh37	13	28597587	28597588	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	48	506	1	ENST00000241453.7:c.2317dup	p.Arg773LysfsTer14	p.R773Kfs*14	ENST00000241453	NM_004119.2	773	agg/aAgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911213	32911213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	40	512	0	ENST00000380152.3:c.2721G>T	p.Lys907Asn	p.K907N	ENST00000380152		907	aaG/aaT																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3823897	3823897	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1273214954		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	57	805	1	ENST00000262367.5:c.2318C>T	p.Pro773Leu	p.P773L	ENST00000262367	NM_004380.2	773	cCg/cTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274130	10274130	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	64	708	1	ENST00000330684.3:c.139A>T	p.Thr47Ser	p.T47S	ENST00000330684	NM_001134407.1	47	Aca/Tca																																																																															
CTCF	10664	MSKCC	GRCh37	16	67663346	67663346	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771793540		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	54	391	0	ENST00000264010.4:c.1747G>A	p.Val583Ile	p.V583I	ENST00000264010	NM_006565.3	583	Gta/Ata																																																																															
FANCA	2175	MSKCC	GRCh37	16	89865609	89865609	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	52	569	1	ENST00000389301.3:c.858G>T	p.Gln286His	p.Q286H	ENST00000389301	NM_000135.2	286	caG/caT																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131295	17131295	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	87	967	1	ENST00000285071.4:c.157C>T	p.Gln53Ter	p.Q53*	ENST00000285071	NM_144997.5	53	Cag/Tag																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368295	45368295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	30	388	0	ENST00000262160.6:c.1307G>A	p.Cys436Tyr	p.C436Y	ENST00000262160	NM_005901.5	436	tGc/tAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288832	15288832	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	12	166	1	ENST00000263388.2:c.3907C>A	p.Pro1303Thr	p.P1303T	ENST00000263388	NM_000435.2	1303	Cca/Aca																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942172	17942172	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1462715334		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	83	706	1	ENST00000458235.1:c.2843G>A	p.Arg948His	p.R948H	ENST00000458235	NM_000215.3	948	cGc/cAc																																																																															
CIC	23152	MSKCC	GRCh37	19	42799228	42799228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	62	781	0	ENST00000575354.2:c.4712C>T	p.Ala1571Val	p.A1571V	ENST00000575354	NM_015125.3	1571	gCt/gTt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467074	25467074	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	62	854	0	ENST00000264709.3:c.1801T>G	p.Trp601Gly	p.W601G	ENST00000264709	NM_175629.2	601	Tgg/Ggg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965820	25965820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	57	757	0	ENST00000435504.4:c.3386C>T	p.Ser1129Phe	p.S1129F	ENST00000435504		1129	tCt/tTt																																																																															
ALK	238	MSKCC	GRCh37	2	29543642	29543642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	65	739	0	ENST00000389048.3:c.1521G>T	p.Lys507Asn	p.K507N	ENST00000389048	NM_004304.4	507	aaG/aaT																																																																															
MSH6	2956	MSKCC	GRCh37	2	48018201	48018202	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	76	644	0	ENST00000234420.5:c.402dup	p.Asp135Ter	p.D135*	ENST00000234420	NM_000179.2	132	-/T																																																																															
PMS1	5378	MSKCC	GRCh37	2	190708718	190708718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	59	397	0	ENST00000441310.2:c.611C>T	p.Ser204Leu	p.S204L	ENST00000441310	NM_000534.4	204	tCa/tTa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022640	31022640	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868859861		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	58	701	0	ENST00000375687.4:c.2125G>A	p.Ala709Thr	p.A709T	ENST00000375687	NM_015338.5	709	Gcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs749415085		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	28	386	0	ENST00000263967.3:c.112C>A	p.Arg38Ser	p.R38S	ENST00000263967	NM_006218.2	38	Cgt/Agt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1800992	1800992	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1236	80	1059	0	ENST00000260795.2:c.121C>A	p.Pro41Thr	p.P41T	ENST00000260795		41	Cca/Aca																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1936967	1936967	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146509878		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	60	565	1	ENST00000382891.5:c.1652C>T	p.Thr551Met	p.T551M	ENST00000382891	NM_133335.3	551	aCg/aTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55946146	55946146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	37	361	0	ENST00000263923.4:c.4033C>A	p.Pro1345Thr	p.P1345T	ENST00000263923	NM_002253.2	1345	Cct/Act																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628392	187628392	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	79	753	0	ENST00000441802.2:c.2590G>C	p.Asp864His	p.D864H	ENST00000441802	NM_005245.3	864	Gac/Cac																																																																															
SDHA	6389	MSKCC	GRCh37	5	235429	235429	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	66	767	1	ENST00000264932.6:c.1235G>T	p.Gly412Val	p.G412V	ENST00000264932	NM_004168.2	412	gGc/gTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046672	180046672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	109	947	0	ENST00000261937.6:c.2640G>A	p.Met880Ile	p.M880I	ENST00000261937	NM_182925.4	880	atG/atA																																																																															
MET	4233	MSKCC	GRCh37	7	116435839	116435839	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1390590380		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	62	651	0	ENST00000397752.3:c.3929A>G	p.Asp1310Gly	p.D1310G	ENST00000397752	NM_000245.2	1310	gAc/gGc																																																																															
ABL1	25	MSKCC	GRCh37	9	133760613	133760613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1320	86	1078	1	ENST00000318560.5:c.2936C>T	p.Ala979Val	p.A979V	ENST00000318560	NM_005157.4	979	gCc/gTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413157	139413157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1384	78	1006	0	ENST00000277541.6:c.985G>A	p.Gly329Ser	p.G329S	ENST00000277541	NM_017617.3	329	Ggt/Agt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	67	328	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101267	27101268	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	68	423	0	ENST00000324856.7:c.4555dup	p.Gln1519ProfsTer13	p.Q1519Pfs*13	ENST00000324856	NM_006015.4	1517	gcc/gCcc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	97	509	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256769	19256769	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	56	334	3	ENST00000162023.5:c.944del	p.Pro315GlnfsTer?	p.P315Qfs*?	ENST00000162023		315	cCa/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	37	277	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103755	47103756	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	90	384	1	ENST00000409792.3:c.6190_6191del	p.Asp2064ProfsTer8	p.D2064Pfs*8	ENST00000409792	NM_014159.6	2064	GAc/c																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732996	30732996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104893809		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	80	301	0	ENST00000359013.4:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000359013	NM_001024847.2	562	Cgc/Tgc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295801	212295801	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1423325504		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	65	336	0	ENST00000342788.4:c.2512C>T	p.Arg838Ter	p.R838*	ENST00000342788	NM_005235.2	838	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	253	428	1	ENST00000407977.2:c.349del	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	104	463	4	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453398	40453399	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs773909918		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	64	532	2	ENST00000345506.4:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000345506	NM_003152.3	365	-/C																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	84	378	3	ENST00000261937.6:c.89del	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932085	39932085	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	57	233	0	ENST00000378444.4:c.2514del	p.Lys839SerfsTer17	p.K839Sfs*17	ENST00000378444	NM_001123385.1	838	ccC/cc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	10	69	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703538	47703538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63749932		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	83	364	0	ENST00000233146.2:c.2038C>T	p.Arg680Ter	p.R680*	ENST00000233146	NM_000251.2	680	Cga/Tga																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202351	138202351	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	52	373	0	ENST00000237289.4:c.2274del	p.Lys759SerfsTer57	p.K759Sfs*57	ENST00000237289	NM_001270507.1	756	gaC/ga																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191049	185191049	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	66	446	1	ENST00000265026.3:c.1934del	p.Pro645LeufsTer19	p.P645Lfs*19	ENST00000265026	NM_004721.4	644	Ccc/cc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865540	57865540	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1295636010		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	189	446	1	ENST00000228682.2:c.3017G>A	p.Gly1006Asp	p.G1006D	ENST00000228682	NM_005269.2	1006	gGc/gAc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	43	487	2	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434613	99434613	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1253103806		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	100	380	0	ENST00000268035.6:c.700G>A	p.Glu234Lys	p.E234K	ENST00000268035	NM_000875.3	234	Gag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130337	11130337	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs281875226		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	124	374	1	ENST00000358026.2:c.2576C>T	p.Thr859Met	p.T859M	ENST00000358026	NM_001128849.1	859	aCg/aTg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135801087	135801087	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs118203357		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	63	292	0	ENST00000298552.3:c.250G>A	p.Ala84Thr	p.A84T	ENST00000298552	NM_001162426.1	84	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	122	501	0	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
TEK	7010	MSKCC	GRCh37	9	27158026	27158026	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	93	466	3	ENST00000380036.4:c.255del	p.Val86LeufsTer31	p.V86Lfs*31	ENST00000380036	NM_000459.3	84	Aaa/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427611	49427611	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs561903173		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	68	387	1	ENST00000301067.7:c.10877G>A	p.Arg3626Gln	p.R3626Q	ENST00000301067	NM_003482.3	3626	cGg/cAg																																																																															
CIC	23152	MSKCC	GRCh37	19	42794440	42794440	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776806622		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	134	579	1	ENST00000575354.2:c.1520G>A	p.Arg507His	p.R507H	ENST00000575354	NM_015125.3	507	cGc/cAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412242	139412242	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	83	441	0	ENST00000277541.6:c.1403T>C	p.Leu468Pro	p.L468P	ENST00000277541	NM_017617.3	468	cTg/cCg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936067	49936067	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201544530		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	87	470	0	ENST00000296474.3:c.1603C>T	p.Arg535Cys	p.R535C	ENST00000296474	NM_002447.2	535	Cgt/Tgt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671680	67671680	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201916739		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	75	373	2	ENST00000264010.4:c.2089G>A	p.Ala697Thr	p.A697T	ENST00000264010	NM_006565.3	697	Gca/Aca																																																																															
JAK3	3718	MSKCC	GRCh37	19	17952291	17952291	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1376805771		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	42	472	0	ENST00000458235.1:c.1049G>A	p.Arg350Gln	p.R350Q	ENST00000458235	NM_000215.3	350	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448517	49448517	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763644658		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	91	322	0	ENST00000301067.7:c.194G>A	p.Arg65His	p.R65H	ENST00000301067	NM_003482.3	65	cGt/cAt																																																																															
TET2	54790	MSKCC	GRCh37	4	106155385	106155385	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1187881284		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	39	325	0	ENST00000380013.4:c.286C>T	p.Arg96Cys	p.R96C	ENST00000380013	NM_001127208.2	96	Cgc/Tgc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041882	14041882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	59	248	0	ENST00000311895.7:c.2429C>T	p.Ala810Val	p.A810V	ENST00000311895	NM_005236.2	810	gCg/gTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923700	39923700	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372187961		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	140	257	1	ENST00000378444.4:c.3391C>T	p.Arg1131Trp	p.R1131W	ENST00000378444	NM_001123385.1	1131	Cgg/Tgg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11291020	11291020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	53	273	0	ENST00000361445.4:c.2741C>T	p.Ala914Val	p.A914V	ENST00000361445	NM_004958.3	914	gCt/gTt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254677	16254677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	88	436	0	ENST00000375759.3:c.1942C>T	p.Arg648Trp	p.R648W	ENST00000375759	NM_015001.2	648	Cgg/Tgg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937202	36937202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	78	450	1	ENST00000361632.4:c.1117G>A	p.Val373Ile	p.V373I	ENST00000361632		373	Gtt/Att																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115272998	115272999	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	61	408	0	ENST00000438362.2:c.1374dup	p.Leu459ThrfsTer30	p.L459Tfs*30	ENST00000438362	NM_001242891.1	458	-/A																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468184	120468185	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	87	415	1	ENST00000256646.2:c.4254dup	p.Ser1419GlnfsTer22	p.S1419Qfs*22	ENST00000256646	NM_024408.3	1418	-/C																																																																															
PARP1	142	MSKCC	GRCh37	1	226568856	226568856	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	70	377	0	ENST00000366794.5:c.1213A>G	p.Lys405Glu	p.K405E	ENST00000366794	NM_001618.3	405	Aag/Gag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851252	63851252	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	118	364	0	ENST00000279873.7:c.2030T>C	p.Leu677Pro	p.L677P	ENST00000279873	NM_032199.2	677	cTg/cCg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910764	114910764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	84	347	0	ENST00000543371.1:c.886del	p.His296IlefsTer19	p.H296Ifs*19	ENST00000543371	NM_001198531.1	295	Ccc/cc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575445	64575446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	61	431	0	ENST00000337652.1:c.586dup	p.Glu196GlyfsTer5	p.E196Gfs*5	ENST00000337652	NM_130803.2	196	gag/gGag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244052	46244052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	83	325	0	ENST00000334344.6:c.2146G>A	p.Ala716Thr	p.A716T	ENST00000334344	NM_152641.2	716	Gct/Act																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900365	3900365	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750411228		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	113	376	0	ENST00000262367.5:c.731C>T	p.Thr244Met	p.T244M	ENST00000262367	NM_004380.2	244	aCg/aTg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56792497	56792497	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	30	284	0	ENST00000308159.5:c.227A>G	p.Gln76Arg	p.Q76R	ENST00000308159	NM_014669.4	76	cAg/cGg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89809229	89809231	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	117	366	0	ENST00000389301.3:c.3742_3744del	p.Lys1248del	p.K1248del	ENST00000389301	NM_000135.2	1248	AAG/-																																																																															
FANCA	2175	MSKCC	GRCh37	16	89833593	89833593	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs752160950		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	82	248	0	ENST00000389301.3:c.2557C>T	p.Arg853Ter	p.R853*	ENST00000389301	NM_000135.2	853	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29663768	29663768	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs137854561		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	189	303	0	ENST00000358273.4:c.6263T>C	p.Leu2088Pro	p.L2088P	ENST00000358273	NM_001042492.2	2088	cTg/cCg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41242965	41242965	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507226		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	48	228	0	ENST00000357654.3:c.4181C>T	p.Thr1394Ile	p.T1394I	ENST00000357654	NM_007294.3	1394	aCt/aTt																																																																															
YES1	7525	MSKCC	GRCh37	18	745987	745987	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs774045264		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	32	279	0	ENST00000314574.4:c.535C>T	p.Arg179Ter	p.R179*	ENST00000314574	NM_005433.3	179	Cga/Tga																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39573289	39573290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	68	224	0	ENST00000262039.4:c.775dup	p.Gln259ProfsTer9	p.Q259Pfs*9	ENST00000262039	NM_002647.2	257	gac/gaCc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291474	10291474	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753673660		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	42	387	2	ENST00000340748.4:c.205C>T	p.Arg69Cys	p.R69C	ENST00000340748		69	Cgt/Tgt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272507	15272507	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	65	297	0	ENST00000263388.2:c.5932C>A	p.Leu1978Met	p.L1978M	ENST00000263388	NM_000435.2	1978	Ctg/Atg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223430	36223430	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376111760		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	148	557	0	ENST00000222270.7:c.5980G>A	p.Ala1994Thr	p.A1994T	ENST00000222270	NM_014727.1	1994	Gcg/Acg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224064	36224064	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1185544469		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	175	513	1	ENST00000222270.7:c.6614C>T	p.Ala2205Val	p.A2205V	ENST00000222270	NM_014727.1	2205	gCt/gTt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47693838	47693838	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63750780		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	44	206	0	ENST00000233146.2:c.1552C>T	p.Gln518Ter	p.Q518*	ENST00000233146	NM_000251.2	518	Cag/Tag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729879	30729879	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	37	193	0	ENST00000359013.4:c.1475T>C	p.Val492Ala	p.V492A	ENST00000359013	NM_001024847.2	492	gTa/gCa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52613085	52613085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1318993618		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	66	246	0	ENST00000394830.3:c.3443G>A	p.Arg1148His	p.R1148H	ENST00000394830	NM_018313.4	1148	cGt/cAt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807782	1807782	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	62	398	0	ENST00000260795.2:c.1841T>C	p.Ile614Thr	p.I614T	ENST00000260795		614	aTc/aCc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247352	153247352	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	52	211	0	ENST00000281708.4:c.1450A>G	p.Arg484Gly	p.R484G	ENST00000281708	NM_033632.3	484	Agg/Ggg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753117	57753117	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1185917187		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	56	277	0	ENST00000274289.3:c.899C>T	p.Pro300Leu	p.P300L	ENST00000274289	NM_006622.3	300	cCg/cTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	80160688	80160688	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	76	403	0	ENST00000265081.6:c.3057A>T	p.Lys1019Asn	p.K1019N	ENST00000265081	NM_002439.4	1019	aaA/aaT																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910609	29910609	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	86	528	1	ENST00000376809.5:c.149G>T	p.Gly50Val	p.G50V	ENST00000376809	NM_002116.7	50	gGc/gTc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675696	30675696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	110	566	0	ENST00000376406.3:c.2660G>A	p.Arg887Lys	p.R887K	ENST00000376406	NM_014641.2	887	aGg/aAg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323312	31323312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	23	168	0	ENST00000412585.2:c.677G>T	p.Arg226Met	p.R226M	ENST00000412585	NM_005514.6	226	aGg/aTg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324142	31324142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	36	377	0	ENST00000412585.2:c.421G>A	p.Ala141Thr	p.A141T	ENST00000412585	NM_005514.6	141	Gcc/Acc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878988	151878988	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138373177		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	73	337	0	ENST00000262189.6:c.5957G>A	p.Arg1986Gln	p.R1986Q	ENST00000262189	NM_170606.2	1986	cGg/cAg																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345797	152345797	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149186933		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	59	271	0	ENST00000359321.1:c.773G>A	p.Arg258His	p.R258H	ENST00000359321	NM_005431.1	258	cGt/cAt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271232	38271232	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781328162		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	101	514	0	ENST00000425967.3:c.2476G>A	p.Val826Ile	p.V826I	ENST00000425967	NM_001174067.1	826	Gtc/Atc																																																																															
NBN	4683	MSKCC	GRCh37	8	90995085	90995085	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs771475965		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	18	212	0	ENST00000265433.3:c.38-2A>G		p.X13_splice	ENST00000265433	NM_002485.4	13																																																																																
AGO2	27161	MSKCC	GRCh37	8	141595359	141595359	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs899336296		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	118	433	0	ENST00000220592.5:c.74C>A	p.Pro25His	p.P25H	ENST00000220592	NM_012154.3	25	cCt/cAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391910	139391910	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	89	501	0	ENST00000277541.6:c.6281A>G	p.Asp2094Gly	p.D2094G	ENST00000277541	NM_017617.3	2094	gAc/gGc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139411825	139411825	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	76	433	0	ENST00000277541.6:c.1454T>C	p.Val485Ala	p.V485A	ENST00000277541	NM_017617.3	485	gTg/gCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0044348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	183	544	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398287	25398288	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTC			P-0044348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	111	398	0	ENST00000256078.4:c.29_31dup	p.Gly10dup	p.G10dup	ENST00000256078	NM_033360.2	10	gct/gGAGct																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538990	187538990	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755244994		P-0044348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	197	479	0	ENST00000441802.2:c.8750G>A	p.Arg2917Gln	p.R2917Q	ENST00000441802	NM_005245.3	2917	cGa/cAa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573127	64573127	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs566593066		P-0044348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	111	369	0	ENST00000337652.1:c.1180C>T	p.Arg394Trp	p.R394W	ENST00000337652	NM_130803.2	394	Cgg/Tgg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163748	152163748	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs104893956		P-0044348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	141	415	0	ENST00000206249.3:c.469C>T	p.Arg157Ter	p.R157*	ENST00000206249	NM_000125.3	157	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108202605	108202605	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0044348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	91	280	0	ENST00000278616.4:c.7630-1G>A		p.X2544_splice	ENST00000278616	NM_000051.3	2544																																																																																
PIK3C2G	5288	MSKCC	GRCh37	12	18691208	18691208	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	114	322	0	ENST00000266497.5:c.3319A>G	p.Arg1107Gly	p.R1107G	ENST00000266497		1107	Aga/Gga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628421	187628421	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1410329862		P-0044348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	291	698	0	ENST00000441802.2:c.2561A>G	p.Asn854Ser	p.N854S	ENST00000441802	NM_005245.3	854	aAc/aGc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163846	32163846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	150	494	0	ENST00000375023.3:c.5380G>A	p.Glu1794Lys	p.E1794K	ENST00000375023	NM_004557.3	1794	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	12	310	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	11	183	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579472	7579473	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0044399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	104	695	1	ENST00000269305.4:c.214_215delinsG	p.Pro72AlafsTer51	p.P72Afs*51	ENST00000269305	NM_001126112.2	72	CCc/Gc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307414	118307416	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-	rs781936420		P-0044399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	10	32	0	ENST00000534358.1:c.200_202del	p.Ala67del	p.A67del	ENST00000534358	NM_005933.3	63	GCG/-																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212439	5212439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150241840		P-0044399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	148	792	1	ENST00000357368.4:c.4678G>A	p.Val1560Met	p.V1560M	ENST00000357368	NM_002850.3	1560	Gtg/Atg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32931914	32931914	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	22	225	0	ENST00000380152.3:c.7653A>T	p.Lys2551Asn	p.K2551N	ENST00000380152		2551	aaA/aaT																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881010	37881010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1238	67	764	0	ENST00000269571.5:c.2339C>A	p.Pro780Gln	p.P780Q	ENST00000269571		780	cCa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112173516	112173516	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	17	266	0	ENST00000257430.4:c.2226del	p.Met743CysfsTer18	p.M743Cfs*18	ENST00000257430	NM_000038.5	742	aTt/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876659802		P-0044433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	118	702	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18524215	18524215	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769408892		P-0044433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	25	488	0	ENST00000266497.5:c.1727C>T	p.Ala576Val	p.A576V	ENST00000266497		576	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0044433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	38	328	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
ALK	238	MSKCC	GRCh37	2	29519815	29519815	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75158395		P-0044433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	66	510	0	ENST00000389048.3:c.1756G>A	p.Ala586Thr	p.A586T	ENST00000389048	NM_004304.4	586	Gcc/Acc																																																																															
NF1	4763	MSKCC	GRCh37	17	29657409	29657409	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1465309384		P-0044433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	69	548	0	ENST00000358273.4:c.5705C>T	p.Ala1902Val	p.A1902V	ENST00000358273	NM_001042492.2	1902	gCc/gTc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519967		P-0044509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	143	445	0	ENST00000347630.2:c.398T>G	p.Phe133Cys	p.F133C	ENST00000347630	NM_001007230.1	133	tTc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	27	280	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0044534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	100	537	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	264	413	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056352	27056352	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0044750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	164	373	1	ENST00000324856.7:c.1348C>T	p.Gln450Ter	p.Q450*	ENST00000324856	NM_006015.4	450	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577495	7577507	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGACCTGGAGTCT	TGACCTGGAGTCT	-			P-0044750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	343	640	0	ENST00000269305.4:c.774_782+4del		p.X258_splice	ENST00000269305	NM_001126112.2	258																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89457254	89457254	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	92	354	0	ENST00000336596.2:c.1735A>G	p.Lys579Glu	p.K579E	ENST00000336596	NM_005233.5	579	Aaa/Gaa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157525039	157525039	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0044750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	144	345	0	ENST00000346085.5:c.4934C>G	p.Ser1645Ter	p.S1645*	ENST00000346085	NM_020732.3	1645	tCa/tGa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913383		P-0044786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	359	416	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	158	306	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70338657	70338657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	300	547	0	ENST00000374080.3:c.53G>A	p.Arg18Gln	p.R18Q	ENST00000374080		18	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578441	7578441	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	496	756	0	ENST00000269305.4:c.489del	p.Tyr163Ter	p.Y163*	ENST00000269305	NM_001126112.2	163	taC/ta																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603007	48603007	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0044786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	76	246	0	ENST00000342988.3:c.1309-1G>T		p.X437_splice	ENST00000342988	NM_005359.5	437																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	129	288	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175755	112175755	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	120	188	0	ENST00000257430.4:c.4464del	p.Leu1488PhefsTer19	p.L1488Ffs*19	ENST00000257430	NM_000038.5	1488	ttA/tt																																																																															
APC	324	MSKCC	GRCh37	5	112174091	112174094	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0044856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	98	236	0	ENST00000257430.4:c.2802_2805del	p.Tyr935IlefsTer19	p.Y935Ifs*19	ENST00000257430	NM_000038.5	934	ACTTac/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578175	7578175	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0044856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	255	464	0	ENST00000269305.4:c.672+2T>C		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs864622007		P-0044927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	219	181	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061207	38061207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	232	275	1	ENST00000250448.2:c.782G>A	p.Arg261His	p.R261H	ENST00000250448	NM_004496.3	261	cGc/cAc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166184	118166184	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371434677		P-0044927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	96	284	1	ENST00000369448.3:c.694G>A	p.Ala232Thr	p.A232T	ENST00000369448	NM_017709.3	232	Gcc/Acc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618502	37618533	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCATCCCTGGGCACAGTTATCAAACCTTT	GCAGCATCCCTGGGCACAGTTATCAAACCTTT	-			P-0044927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	63	361	0	ENST00000447079.4:c.179_210del	p.Ala60GlyfsTer4	p.A60Gfs*4	ENST00000447079	NM_015083.1	60	GCAGCATCCCTGGGCACAGTTATCAAACCTTTg/g																																																																															
CDK12	51755	MSKCC	GRCh37	17	37667852	37667853	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0044927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	84	336	0	ENST00000447079.4:c.2738dup	p.Tyr913Ter	p.Y913*	ENST00000447079	NM_015083.1	913	tac/tAac																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158557	26158557	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	63	386	0	ENST00000289316.2:c.160G>C	p.Gly54Arg	p.G54R	ENST00000289316	NM_138720.2	54	Ggc/Cgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0045114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	335	633	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0045114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	103	207	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0045114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	256	368	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604707	48604707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	113	383	0	ENST00000342988.3:c.1529G>A	p.Gly510Glu	p.G510E	ENST00000342988	NM_005359.5	510	gGa/gAa																																																																															
SYK	6850	MSKCC	GRCh37	9	93626944	93626944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	112	426	0	ENST00000375746.1:c.791C>T	p.Thr264Ile	p.T264I	ENST00000375746	NM_001174167.1	264	aCa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934874		P-0045257-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	500	587	0	ENST00000269305.4:c.451C>G	p.Pro151Ala	p.P151A	ENST00000269305	NM_001126112.2	151	Ccc/Gcc																																																																															
KDR	3791	MSKCC	GRCh37	4	55948787	55948787	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs751902659		P-0045257-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			105	66	285	0	ENST00000263923.4:c.3678C>A	p.Asn1226Lys	p.N1226K	ENST00000263923	NM_002253.2	1226	aaC/aaA																																																																															
NF1	4763	MSKCC	GRCh37	17	29661945	29661945	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854552		P-0045257-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			152	166	321	0	ENST00000358273.4:c.5902C>T	p.Arg1968Ter	p.R1968*	ENST00000358273	NM_001042492.2	1968	Cga/Tga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86670671	86670671	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045257-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			53	38	168	0	ENST00000274376.6:c.1949del	p.Asp650AlafsTer7	p.D650Afs*7	ENST00000274376	NM_002890.2	650	gAc/gc																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813432	102813432	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751304020		P-0045570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	11	463	0	ENST00000307046.8:c.257C>T	p.Ala86Val	p.A86V	ENST00000307046	NM_001111285.1	86	gCg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087403	27087403	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	231	584	0	ENST00000324856.7:c.1977del	p.Gly660GlufsTer2	p.G660Efs*2	ENST00000324856	NM_006015.4	659	ccT/cc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197851	123197851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	133	372	0	ENST00000218089.9:c.1975G>A	p.Asp659Asn	p.D659N	ENST00000218089	NM_001042749.1	659	Gat/Aat																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046826-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			324	183	697	1	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16001793	16001793	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0046826-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			281	124	427	0	ENST00000268712.3:c.2708C>G	p.Ser903Ter	p.S903*	ENST00000268712	NM_006311.3	903	tCa/tGa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372259	55372270	+	inframe_deletion	In_Frame_Del	DEL	CACCAGCACCAG	CACCAGCACCAG	-	rs760361004		P-0046826-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			131	29	436	0	ENST00000297316.4:c.966_977del	p.Gln322_His325del	p.Q322_H325del	ENST00000297316	NM_022454.3	317	CACCAGCACCAG/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7574014	7574014	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1064796401		P-0046826-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			182	100	626	0	ENST00000269305.4:c.1013T>C	p.Phe338Ser	p.F338S	ENST00000269305	NM_001126112.2	338	tTc/tCc																																																																															
RB1	5925	MSKCC	GRCh37	13	48923143	48923144	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTT			P-0046826-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			103	82	239	0	ENST00000267163.4:c.594_596dup	p.Phe198dup	p.F198dup	ENST00000267163	NM_000321.2	198	-/TTT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0047948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	275	715	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	84	275	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112157650	112157650	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	29	380	0	ENST00000257430.4:c.1370C>A	p.Ser457Ter	p.S457*	ENST00000257430	NM_000038.5	457	tCa/tAa																																																																															
PGR	5241	MSKCC	GRCh37	11	100933480	100933480	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766277966		P-0047948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	31	177	0	ENST00000325455.5:c.1910G>A	p.Arg637Gln	p.R637Q	ENST00000325455	NM_001202474.3	637	cGa/cAa																																																																															
AXL	558	MSKCC	GRCh37	19	41744489	41744489	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767925068		P-0047948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	90	923	2	ENST00000301178.4:c.1109C>T	p.Ala370Val	p.A370V	ENST00000301178	NM_021913.4	370	gCg/gTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646292	3646300	+	inframe_deletion	In_Frame_Del	DEL	CACAGCCTG	CACAGCCTG	-			P-0047948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	73	1166	0	ENST00000294008.3:c.1778_1786del	p.Ala593_Cys595del	p.A593_C595del	ENST00000294008	NM_032444.2	593	gCAGGCTGTGgc/ggc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52675997	52675997	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	60	541	0	ENST00000394830.3:c.1060G>T	p.Glu354Ter	p.E354*	ENST00000394830	NM_018313.4	354	Gaa/Taa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572521	64572522	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	A			P-0047948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	74	807	0	ENST00000337652.1:c.1349_1350delinsT	p.Gly450ValfsTer13	p.G450Vfs*13	ENST00000337652	NM_130803.2	450	gGC/gT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0049639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	324	638	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778720		P-0049639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	338	570	1	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332868	152332868	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745723014		P-0049639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	68	415	0	ENST00000206249.3:c.1174G>A	p.Val392Ile	p.V392I	ENST00000206249	NM_000125.3	392	Gtc/Atc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	62	258	0	ENST00000263967.3:c.3132T>G	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaG																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863394	57863394	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs533875222		P-0049639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	180	746	0	ENST00000228682.2:c.1489C>T	p.Arg497Cys	p.R497C	ENST00000228682	NM_005269.2	497	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175398	112175399	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	87	224	0	ENST00000257430.4:c.4111dup	p.Ser1371LysfsTer4	p.S1371Kfs*4	ENST00000257430	NM_000038.5	1369	-/A																																																																															
JUN	3725	MSKCC	GRCh37	1	59248232	59248232	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	32	92	1	ENST00000371222.2:c.511G>T	p.Ala171Ser	p.A171S	ENST00000371222	NM_002228.3	171	Gca/Tca																																																																															
APC	324	MSKCC	GRCh37	5	112175395	112175396	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	42	223	0	ENST00000257430.4:c.4107dup	p.Lys1370GlnfsTer5	p.K1370Qfs*5	ENST00000257430	NM_000038.5	1368	-/C																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730910	40730910	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370873414		P-0049810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	285	716	3	ENST00000373198.4:c.3625C>T	p.Arg1209Trp	p.R1209W	ENST00000373198	NM_133170.3	1209	Cgg/Tgg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56488229	56488229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	287	718	0	ENST00000267101.3:c.1748C>T	p.Pro583Leu	p.P583L	ENST00000267101	NM_001982.3	583	cCc/cTc																																																																															
PARP1	142	MSKCC	GRCh37	1	226574115	226574115	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	231	599	0	ENST00000366794.5:c.746A>G	p.Lys249Arg	p.K249R	ENST00000366794	NM_001618.3	249	aAg/aGg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630388	47630388	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1198168331		P-0049810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	307	816	1	ENST00000233146.2:c.58G>A	p.Val20Met	p.V20M	ENST00000233146	NM_000251.2	20	Gtg/Atg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319907	8319907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	186	550	0	ENST00000356435.5:c.5594G>A	p.Arg1865Lys	p.R1865K	ENST00000356435		1865	aGa/aAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0050976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	70	372	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0050976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	48	304	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134644679	134644679	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773064927		P-0050976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	88	472	0	ENST00000398015.3:c.80C>T	p.Thr27Met	p.T27M	ENST00000398015	NM_004441.4	27	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175772	112175772	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	53	289	0	ENST00000257430.4:c.4483del	p.Ser1495ValfsTer12	p.S1495Vfs*12	ENST00000257430	NM_000038.5	1494	gAa/ga																																																																															
AR	367	MSKCC	GRCh37	X	66941796	66941796	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	77	202	0	ENST00000374690.3:c.2440T>G	p.Phe814Val	p.F814V	ENST00000374690	NM_000044.3	814	Ttc/Gtc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114917829	114917829	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0050976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	195	500	0	ENST00000543371.1:c.1318+1G>A		p.X440_splice	ENST00000543371	NM_001198531.1	440																																																																																
TBX3	6926	MSKCC	GRCh37	12	115109690	115109690	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1407667924		P-0050976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	163	745	0	ENST00000257566.3:c.2188G>A	p.Gly730Ser	p.G730S	ENST00000257566	NM_016569.3	730	Ggc/Agc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936083	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0050976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	77	422	1	ENST00000263967.3:c.1624_1625delinsTT	p.Glu542Leu	p.E542L	ENST00000263967	NM_006218.2	542	GAa/TTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0051049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	217	579	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	273	346	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828155	243828155	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	113	335	0	ENST00000263826.5:c.203A>C	p.Lys68Thr	p.K68T	ENST00000263826	NM_005465.4	68	aAg/aCg																																																																															
RET	5979	MSKCC	GRCh37	10	43615155	43615155	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	218	667	0	ENST00000355710.3:c.2569C>T	p.Gln857Ter	p.Q857*	ENST00000355710	NM_020975.4	857	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0057188-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			148	10	387	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587782082		P-0057188-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			186	18	508	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59938891	59938891	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs45512093		P-0057188-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			142	16	431	0	ENST00000259008.2:c.10A>G	p.Met4Val	p.M4V	ENST00000259008	NM_032043.2	4	Atg/Gtg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144059	11144059	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057188-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			182	41	687	0	ENST00000344626.4:c.3640A>T	p.Ile1214Phe	p.I1214F	ENST00000344626	NM_003072.3	1214	Atc/Ttc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38971987	38971987	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs945367887		P-0057188-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			127	13	329	0	ENST00000357387.3:c.964G>A	p.Glu322Lys	p.E322K	ENST00000357387	NM_152756.3	322	Gaa/Aaa																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2104166	2104166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057188-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			170	16	471	0	ENST00000382203.1:c.3289G>A	p.Asp1097Asn	p.D1097N	ENST00000382203		1097	Gat/Aat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971110	21971110	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519881		P-0057188-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			191	17	713	0	ENST00000304494.5:c.248A>G	p.His83Arg	p.H83R	ENST00000304494	NM_000077.4	83	cAc/cGc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492938	56492938	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0059250-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			433	71	609	0	ENST00000407977.2:c.1A>G	p.Met1?	p.M1?	ENST00000407977		1	Atg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059250-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			295	53	366	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437664	49437664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059250-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			556	72	790	0	ENST00000301067.7:c.5306C>T	p.Pro1769Leu	p.P1769L	ENST00000301067	NM_003482.3	1769	cCt/cTt																																																																															
IRF4	3662	MSKCC	GRCh37	6	395894	395894	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059250-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			408	66	671	0	ENST00000380956.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000380956	NM_001195286.1	151	Ccc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0059699-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			338	23	481	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0059910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	31	607	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0059910-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	14	317	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0059913-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	26	579	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332855	153332855	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059913-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	35	626	0	ENST00000281708.4:c.101A>G	p.Asn34Ser	p.N34S	ENST00000281708	NM_033632.3	34	aAt/aGt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0059914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	55	769	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245240	46245240	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	55	679	0	ENST00000334344.6:c.3334C>T	p.Gln1112Ter	p.Q1112*	ENST00000334344	NM_152641.2	1112	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830100	72830101	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0059914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	72	706	0	ENST00000268489.5:c.6480dup	p.Arg2161AlafsTer5	p.R2161Afs*5	ENST00000268489	NM_006885.3	2160	-/G																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32189027	32189027	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750178637		P-0059914-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	74	759	0	ENST00000375023.3:c.527C>T	p.Pro176Leu	p.P176L	ENST00000375023	NM_004557.3	176	cCc/cTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913351		P-0059929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	76	390	0	ENST00000288602.6:c.1397G>A	p.Gly466Glu	p.G466E	ENST00000288602	NM_004333.4	466	gGa/gAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250852	153250852	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0059929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	152	422	0	ENST00000281708.4:c.1208T>A	p.Leu403Ter	p.L403*	ENST00000281708	NM_033632.3	403	tTa/tAa																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362500	40362500	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1219718677		P-0059929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	190	547	0	ENST00000293328.3:c.1696C>T	p.Arg566Trp	p.R566W	ENST00000293328	NM_012448.3	566	Cgg/Tgg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115263220	115263220	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	202	510	0	ENST00000438362.2:c.2130A>T	p.Gln710His	p.Q710H	ENST00000438362	NM_001242891.1	710	caA/caT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164482	47164487	+	inframe_deletion	In_Frame_Del	DEL	ATGCTT	ATGCTT	-			P-0059929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	173	633	0	ENST00000409792.3:c.1639_1644del	p.Lys547_His548del	p.K547_H548del	ENST00000409792	NM_014159.6	547	AAGCAT/-																																																																															
APC	324	MSKCC	GRCh37	5	112164613	112164613	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0059929-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	148	554	0	ENST00000257430.4:c.1688del	p.Leu563CysfsTer7	p.L563Cfs*7	ENST00000257430	NM_000038.5	563	Ttg/tg																																																																															
MGA	23269	MSKCC	GRCh37	15	41962066	41962066	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	98	573	0	ENST00000219905.7:c.976del	p.Asn327IlefsTer2	p.N327Ifs*2	ENST00000219905	NM_001164273.1	325	tCc/tc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350451	15350474	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGCAGGGAGAGCACTCACGCTGG	GGGCAGGGAGAGCACTCACGCTGG	-			P-0059934-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	71	633	0	ENST00000263377.2:c.3441_3445+19del		p.X1147_splice	ENST00000263377	NM_058243.2	1147																																																																																
TERT	7015	MSKCC	GRCh37	5	1293475	1293475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059939-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	104	500	0	ENST00000310581.5:c.1526C>T	p.Thr509Met	p.T509M	ENST00000310581	NM_198253.2	509	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934874		P-0059942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	224	651	2	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087558	27087558	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0059942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	217	667	0	ENST00000324856.7:c.2132C>G	p.Ser711Ter	p.S711*	ENST00000324856	NM_006015.4	711	tCa/tGa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528895	157528895	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs763772159		P-0059942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	153	596	0	ENST00000346085.5:c.6620G>C	p.Arg2207Thr	p.R2207T	ENST00000346085	NM_020732.3	2207	aGa/aCa																																																																															
ATM	472	MSKCC	GRCh37	11	108200961	108200961	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782310		P-0059942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	97	471	0	ENST00000278616.4:c.7328G>A	p.Arg2443Gln	p.R2443Q	ENST00000278616	NM_000051.3	2443	cGa/cAa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3801749	3801749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	112	543	0	ENST00000262367.5:c.3757G>A	p.Asp1253Asn	p.D1253N	ENST00000262367	NM_004380.2	1253	Gac/Aac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045677	47045677	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	145	369	0	ENST00000329236.7:c.2326del	p.Asp776ThrfsTer32	p.D776Tfs*32	ENST00000329236	NM_001204466.1	775	cGg/cg																																																																															
HGF	3082	MSKCC	GRCh37	7	81335639	81335639	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	150	391	0	ENST00000222390.5:c.1721C>A	p.Pro574His	p.P574H	ENST00000222390	NM_000601.4	574	cCt/cAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42002891	42002891	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0059942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	99	313	0	ENST00000219905.7:c.2428G>T	p.Gly810Ter	p.G810*	ENST00000219905	NM_001164273.1	810	Gga/Tga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166916	32166916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	76	570	0	ENST00000375023.3:c.4322C>T	p.Pro1441Leu	p.P1441L	ENST00000375023	NM_004557.3	1441	cCt/cTt																																																																															
STK19	8859	MSKCC	GRCh37	6	31948488	31948488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	40	250	0	ENST00000375331.2:c.959C>T	p.Ser320Leu	p.S320L	ENST00000375331	NM_004197.1	320	tCa/tTa																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379701	17379701	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs775407791		P-0059942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	63	633	0	ENST00000359435.4:c.86C>G	p.Ser29Cys	p.S29C	ENST00000359435	NM_001033549.1	29	tCc/tGc																																																																															
NADK	65220	MSKCC	GRCh37	1	1686819	1686819	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0059942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	63	499	0	ENST00000344463.4:c.1117A>C	p.Ile373Leu	p.I373L	ENST00000344463		373	Ata/Cta																																																																															
MGA	23269	MSKCC	GRCh37	15	41961330	41961331	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0059942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	82	539	0	ENST00000219905.7:c.240_241dup	p.Asn81IlefsTer16	p.N81Ifs*16	ENST00000219905	NM_001164273.1	80	gat/gATat																																																																															
MGA	23269	MSKCC	GRCh37	15	42041575	42041575	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	227	584	0	ENST00000219905.7:c.5770T>C	p.Tyr1924His	p.Y1924H	ENST00000219905	NM_001164273.1	1924	Tat/Cat																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786796	3786796	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	87	491	0	ENST00000262367.5:c.4415G>C	p.Trp1472Ser	p.W1472S	ENST00000262367	NM_004380.2	1472	tGg/tCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923665	72923665	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0059942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	164	615	0	ENST00000268489.5:c.3413T>G	p.Ile1138Ser	p.I1138S	ENST00000268489	NM_006885.3	1138	aTc/aGc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18972880	18972880	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	52	489	0	ENST00000262803.5:c.2519C>G	p.Ser840Cys	p.S840C	ENST00000262803	NM_002911.3	840	tCc/tGc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46609697	46609697	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	54	606	0	ENST00000263734.3:c.2421G>C	p.Gln807His	p.Q807H	ENST00000263734	NM_001430.4	807	caG/caC																																																																															
EP300	2033	MSKCC	GRCh37	22	41553269	41553269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767582855		P-0059942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	177	499	0	ENST00000263253.7:c.3358G>A	p.Asp1120Asn	p.D1120N	ENST00000263253	NM_001429.3	1120	Gat/Aat																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056223	26056223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	68	659	0	ENST00000343677.2:c.434C>T	p.Ala145Val	p.A145V	ENST00000343677	NM_005319.3	145	gCa/gTa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508231	106508231	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	197	611	0	ENST00000359195.3:c.225G>C	p.Trp75Cys	p.W75C	ENST00000359195	NM_002649.2	75	tgG/tgC																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53230751	53230751	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	119	247	0	ENST00000375401.3:c.2042G>T	p.Arg681Leu	p.R681L	ENST00000375401	NM_004187.3	681	cGa/cTa																																																																															
ATRX	546	MSKCC	GRCh37	X	76888829	76888829	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059942-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	136	262	0	ENST00000373344.5:c.5000A>G	p.Tyr1667Cys	p.Y1667C	ENST00000373344	NM_000489.3	1667	tAc/tGc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26978156	26978156	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0059943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	153	371	0	ENST00000381527.3:c.1333del	p.Met445TrpfsTer37	p.M445Wfs*37	ENST00000381527	NM_001260.1	445	Atg/tg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060858	38060861	+	frameshift_variant	Frame_Shift_Del	DEL	GTGT	GTGT	-			P-0059943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			924	96	654	0	ENST00000250448.2:c.1128_1131del	p.His377AlafsTer11	p.H377Afs*11	ENST00000250448	NM_004496.3	376	gcACAC/gc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061226	38061229	+	frameshift_variant	Frame_Shift_Del	DEL	CGAA	CGAA	-			P-0059943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	262	601	0	ENST00000250448.2:c.760_763del	p.Phe254ArgfsTer66	p.F254Rfs*66	ENST00000250448	NM_004496.3	254	TTCGag/ag																																																																															
MSH3	4437	MSKCC	GRCh37	5	80063772	80063772	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs773818431		P-0059943-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	53	336	0	ENST00000265081.6:c.1917C>G	p.Phe639Leu	p.F639L	ENST00000265081	NM_002439.4	639	ttC/ttG																																																																															
IGF2	3481	MSKCC	GRCh37	11	2156672	2156672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	80	553	0	ENST00000434045.2:c.250C>T	p.Pro84Ser	p.P84S	ENST00000434045	NM_001127598.1	84	Ccc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0059944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			122	21	292	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0059944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	70	584	0	ENST00000269305.4:c.991del	p.Gln331ArgfsTer14	p.Q331Rfs*14	ENST00000269305	NM_001126112.2	331	Cag/ag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37865697	37865697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	131	541	0	ENST00000269571.5:c.566C>T	p.Ser189Phe	p.S189F	ENST00000269571		189	tCt/tTt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751491	57751492	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0059944-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	30	510	0	ENST00000274289.3:c.1499dup	p.Phe501IlefsTer9	p.F501Ifs*9	ENST00000274289	NM_006622.3	500	tca/tcCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	142	576	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			708	70	671	0	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602580	10602580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	163	652	0	ENST00000171111.5:c.998G>T	p.Gly333Val	p.G333V	ENST00000171111	NM_203500.1	333	gGc/gTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602580	10602581	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	163	660	0	ENST00000171111.5:c.997_998delinsTT	p.Gly333Phe	p.G333F	ENST00000171111	NM_203500.1	333	GGc/TTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971095	21971096	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	107	567	0	ENST00000304494.5:c.262dup	p.Glu88GlyfsTer32	p.E88Gfs*32	ENST00000304494	NM_000077.4	88	gag/gGag																																																																															
KDR	3791	MSKCC	GRCh37	4	55979597	55979597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	27	396	0	ENST00000263923.4:c.850G>A	p.Glu284Lys	p.E284K	ENST00000263923	NM_002253.2	284	Gag/Aag																																																																															
POLE	5426	MSKCC	GRCh37	12	133233726	133233726	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	177	537	0	ENST00000320574.5:c.3578G>C	p.Arg1193Thr	p.R1193T	ENST00000320574	NM_006231.2	1193	aGa/aCa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971153	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	147	602	0	ENST00000304494.5:c.205del	p.Glu69SerfsTer77	p.E69Sfs*77	ENST00000304494	NM_000077.4	69	Gag/ag																																																																															
RRAS	6237	MSKCC	GRCh37	19	50143346	50143346	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	56	425	0	ENST00000246792.3:c.10G>T	p.Gly4Trp	p.G4W	ENST00000246792	NM_006270.3	4	Ggg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40747109	40747109	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	95	467	0	ENST00000373198.4:c.2973G>A	p.Trp991Ter	p.W991*	ENST00000373198	NM_133170.3	991	tgG/tgA																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564734	86564734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	145	587	0	ENST00000274376.6:c.466G>T	p.Gly156Cys	p.G156C	ENST00000274376	NM_002890.2	156	Ggt/Tgt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528514	157528514	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	88	547	0	ENST00000346085.5:c.6239G>C	p.Arg2080Thr	p.R2080T	ENST00000346085	NM_020732.3	2080	aGa/aCa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256861	16256861	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	56	589	0	ENST00000375759.3:c.4126G>T	p.Gly1376Cys	p.G1376C	ENST00000375759	NM_015001.2	1376	Ggt/Tgt																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202555	67202555	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	323	659	0	ENST00000312629.5:c.1364C>G	p.Pro455Arg	p.P455R	ENST00000312629	NM_003952.2	455	cCg/cGg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21626553	21626553	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	35	448	0	ENST00000421138.2:c.1379A>T	p.Gln460Leu	p.Q460L	ENST00000421138		460	cAa/cTa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120711	115120711	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	144	625	0	ENST00000257566.3:c.295G>T	p.Val99Leu	p.V99L	ENST00000257566	NM_016569.3	99	Gtg/Ttg																																																																															
KLF5	688	MSKCC	GRCh37	13	73636452	73636452	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	88	645	0	ENST00000377687.4:c.715A>G	p.Met239Val	p.M239V	ENST00000377687	NM_001730.3	239	Atg/Gtg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514848	103514848	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	122	609	0	ENST00000355739.4:c.1349G>T	p.Ser450Ile	p.S450I	ENST00000355739	NM_000123.3	450	aGt/aTt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749061	43749061	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	37	570	0	ENST00000382044.4:c.1745T>A	p.Val582Glu	p.V582E	ENST00000382044	NM_001141980.1	582	gTa/gAa																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348891	11348891	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs760173376		P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	69	464	0	ENST00000332029.2:c.445G>C	p.Glu149Gln	p.E149Q	ENST00000332029	NM_003745.1	149	Gag/Cag																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86545044	86545044	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	56	502	0	ENST00000262426.4:c.869T>G	p.Leu290Arg	p.L290R	ENST00000262426	NM_001451.2	290	cTg/cGg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40354466	40354466	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			734	79	588	0	ENST00000293328.3:c.2130-1G>T		p.X710_splice	ENST00000293328	NM_012448.3	710																																																																																
BRCA1	672	MSKCC	GRCh37	17	41226444	41226444	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	95	509	0	ENST00000357654.3:c.4579G>T	p.Glu1527Ter	p.E1527*	ENST00000357654	NM_007294.3	1527	Gag/Tag																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61310734	61310734	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			24	12	54	0	ENST00000341074.5:c.78C>G	p.Asn26Lys	p.N26K	ENST00000341074	NM_002974.2	26	aaC/aaG																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621888	1621888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	97	556	0	ENST00000344749.5:c.904G>T	p.Gly302Cys	p.G302C	ENST00000344749	NM_001136139.2	302	Ggc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224533	36224533	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	186	669	0	ENST00000222270.7:c.6995G>T	p.Arg2332Leu	p.R2332L	ENST00000222270	NM_014727.1	2332	cGt/cTt																																																																															
CIC	23152	MSKCC	GRCh37	19	42791307	42791307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	158	534	0	ENST00000575354.2:c.367C>T	p.Pro123Ser	p.P123S	ENST00000575354	NM_015125.3	123	Ccg/Tcg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45854976	45854976	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	119	472	0	ENST00000391945.4:c.2194G>T	p.Asp732Tyr	p.D732Y	ENST00000391945	NM_000400.3	732	Gat/Tat																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902277	50902277	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	61	553	0	ENST00000440232.2:c.169G>T	p.Glu57Ter	p.E57*	ENST00000440232	NM_002691.3	57	Gag/Tag																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912425	50912425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	63	501	0	ENST00000440232.2:c.1939G>T	p.Val647Leu	p.V647L	ENST00000440232	NM_002691.3	647	Gtg/Ttg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52723065	52723065	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	147	608	0	ENST00000322088.6:c.1250G>A	p.Trp417Ter	p.W417*	ENST00000322088	NM_014225.5	417	tGg/tAg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082379	16082379	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	183	568	0	ENST00000281043.3:c.193C>A	p.Arg65Ser	p.R65S	ENST00000281043	NM_005378.4	65	Cgt/Agt																																																																															
ALK	238	MSKCC	GRCh37	2	29419722	29419722	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	46	441	0	ENST00000389048.3:c.4078C>G	p.Arg1360Gly	p.R1360G	ENST00000389048	NM_004304.4	1360	Cgg/Ggg																																																																															
ALK	238	MSKCC	GRCh37	2	29455274	29455274	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	170	592	0	ENST00000389048.3:c.2528G>T	p.Gly843Val	p.G843V	ENST00000389048	NM_004304.4	843	gGa/gTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100905	41100905	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	48	554	0	ENST00000373198.4:c.1450+1G>C		p.X484_splice	ENST00000373198	NM_133170.3	484																																																																																
TGFBR2	7048	MSKCC	GRCh37	3	30729984	30729984	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	95	476	0	ENST00000359013.4:c.1580G>C	p.Ser527Thr	p.S527T	ENST00000359013	NM_001024847.2	527	aGc/aCc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103765	47103765	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	52	511	0	ENST00000409792.3:c.6181A>T	p.Arg2061Ter	p.R2061*	ENST00000409792	NM_014159.6	2061	Aga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498373	89498373	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	33	393	0	ENST00000336596.2:c.2347-2A>G		p.X783_splice	ENST00000336596	NM_005233.5	783																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134898759	134898759	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	134	553	0	ENST00000398015.3:c.1817C>G	p.Ala606Gly	p.A606G	ENST00000398015	NM_004441.4	606	gCt/gGt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048608	180048608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	108	578	0	ENST00000261937.6:c.1954G>A	p.Val652Met	p.V652M	ENST00000261937	NM_182925.4	652	Gtg/Atg																																																																															
STK19	8859	MSKCC	GRCh37	6	31948524	31948524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	15	124	0	ENST00000375331.2:c.995G>T	p.Arg332Leu	p.R332L	ENST00000375331	NM_004197.1	332	cGg/cTg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93955024	93955024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			60	12	269	0	ENST00000369303.4:c.2874G>A	p.Met958Ile	p.M958I	ENST00000369303	NM_004440.3	958	atG/atA																																																																															
HGF	3082	MSKCC	GRCh37	7	81381544	81381544	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	75	377	0	ENST00000222390.5:c.517C>G	p.Gln173Glu	p.Q173E	ENST00000222390	NM_000601.4	173	Cag/Gag																																																																															
EZH2	2146	MSKCC	GRCh37	7	148523561	148523561	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	54	358	0	ENST00000320356.2:c.892C>A	p.Arg298Ser	p.R298S	ENST00000320356	NM_004456.4	298	Cgt/Agt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228217	53228217	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	149	298	0	ENST00000375401.3:c.2185G>C	p.Val729Leu	p.V729L	ENST00000375401	NM_004187.3	729	Gtc/Ctc																																																																															
AR	367	MSKCC	GRCh37	X	66942780	66942780	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	76	165	0	ENST00000374690.3:c.2561C>A	p.Ser854Ter	p.S854*	ENST00000374690	NM_000044.3	854	tCa/tAa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589575	67589576	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0059956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	61	232	0	ENST00000274335.5:c.1344dup	p.Leu449IlefsTer3	p.L449Ifs*3	ENST00000274335		446	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0059956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	156	544	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0059956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	94	364	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175770	112175770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	150	623	0	ENST00000257430.4:c.4480del	p.Glu1494LysfsTer13	p.E1494Kfs*13	ENST00000257430	NM_000038.5	1493	acG/ac																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444345	50444345	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	182	680	0	ENST00000331340.3:c.275T>C	p.Met92Thr	p.M92T	ENST00000331340	NM_006060.4	92	aTg/aCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0059956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	202	349	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016672	12016672	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	134	512	0	ENST00000353533.5:c.808A>G	p.Met270Val	p.M270V	ENST00000353533	NM_003010.3	270	Atg/Gtg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245873	5245873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	178	668	0	ENST00000357368.4:c.902C>T	p.Thr301Ile	p.T301I	ENST00000357368	NM_002850.3	301	aCa/aTa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0059956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	219	566	0	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382196	152382196	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747099645		P-0059956-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	162	445	1	ENST00000206249.3:c.1306C>T	p.Arg436Cys	p.R436C	ENST00000206249	NM_000125.3	436	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	328	679	0	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0059959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	32	261	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735470	40735470	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761910971		P-0059959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	159	552	0	ENST00000373198.4:c.3403G>A	p.Val1135Met	p.V1135M	ENST00000373198	NM_133170.3	1135	Gtg/Atg																																																																															
AR	367	MSKCC	GRCh37	X	66766199	66766199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059959-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	77	578	0	ENST00000374690.3:c.1211C>T	p.Ala404Val	p.A404V	ENST00000374690	NM_000044.3	404	gCg/gTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0060463-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			406	29	661	0				ENST00000310581	NM_198253.2																																																																																	
DNMT3A	1788	MSKCC	GRCh37	2	25467448	25467448	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1392385564		P-0060463-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			611	56	738	0	ENST00000264709.3:c.1628del	p.Gly543AlafsTer108	p.G543Afs*108	ENST00000264709	NM_175629.2	543	gGc/gc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12627290	12627290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060463-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	48	422	0	ENST00000251849.4:c.1426C>T	p.Leu476Phe	p.L476F	ENST00000251849	NM_002880.3	476	Ctc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0060463-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			327	83	397	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137528167	137528167	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs777965499		P-0060463-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			478	33	446	0	ENST00000367739.4:c.133A>G	p.Ile45Val	p.I45V	ENST00000367739	NM_000416.2	45	Atc/Gtc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039886	47039886	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060463-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			418	36	514	0	ENST00000329236.7:c.997del	p.Gln333SerfsTer74	p.Q333Sfs*74	ENST00000329236	NM_001204466.1	332	gCc/gc																																																																															
ATRX	546	MSKCC	GRCh37	X	76854906	76854907	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0060463-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			451	31	461	0	ENST00000373344.5:c.5929_5930delinsAG	p.Pro1977Ser	p.P1977S	ENST00000373344	NM_000489.3	1977	CCt/AGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0060597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	489	643	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
TET2	54790	MSKCC	GRCh37	4	106197309	106197309	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1417392445		P-0060597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	289	491	0	ENST00000380013.4:c.5642A>G	p.His1881Arg	p.H1881R	ENST00000380013	NM_001127208.2	1881	cAt/cGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187527265	187527265	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373448625		P-0060597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	197	472	0	ENST00000441802.2:c.10309G>A	p.Ala3437Thr	p.A3437T	ENST00000441802	NM_005245.3	3437	Gcg/Acg																																																																															
CD79B	974	MSKCC	GRCh37	17	62007234	62007234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	306	566	0	ENST00000392795.3:c.448G>T	p.Ala150Ser	p.A150S	ENST00000392795	NM_001039933.1	150	Gca/Tca																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36938135	36938135	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201037400		P-0060597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	118	549	0	ENST00000361632.4:c.826G>A	p.Glu276Lys	p.E276K	ENST00000361632		276	Gaa/Aaa																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46509450	46509450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	46	499	0	ENST00000262741.5:c.1281G>T	p.Glu427Asp	p.E427D	ENST00000262741	NM_003629.3	427	gaG/gaT																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125497596	125497596	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0060597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	114	359	0	ENST00000428830.2:c.160A>T	p.Lys54Ter	p.K54*	ENST00000428830	NM_001114121.2	54	Aaa/Taa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2124238	2124238	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0060597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	194	558	0	ENST00000219476.3:c.2393A>T	p.His798Leu	p.H798L	ENST00000219476	NM_000548.3	798	cAc/cTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923328	9923328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	198	377	0	ENST00000330684.3:c.1959G>T	p.Met653Ile	p.M653I	ENST00000330684	NM_001134407.1	653	atG/atT																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032357	10032357	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0060597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	160	478	0	ENST00000330684.3:c.466A>T	p.Thr156Ser	p.T156S	ENST00000330684	NM_001134407.1	156	Acg/Tcg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15278135	15278135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	29	531	0	ENST00000263388.2:c.5287G>A	p.Ala1763Thr	p.A1763T	ENST00000263388	NM_000435.2	1763	Gca/Aca																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248743	212248743	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	117	462	0	ENST00000342788.4:c.3524G>T	p.Arg1175Ile	p.R1175I	ENST00000342788	NM_005235.2	1175	aGa/aTa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206812	36206812	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			764	86	598	0	ENST00000300305.3:c.700A>G	p.Thr234Ala	p.T234A	ENST00000300305		234	Aca/Gca																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499435	89499435	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	371	518	0	ENST00000336596.2:c.2605C>G	p.Pro869Ala	p.P869A	ENST00000336596	NM_005233.5	869	Ccc/Gcc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185161366	185161366	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1248	83	413	0	ENST00000265026.3:c.793A>G	p.Ser265Gly	p.S265G	ENST00000265026	NM_004721.4	265	Agt/Ggt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562486	176562486	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0060597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			817	205	553	0	ENST00000439151.2:c.382C>T	p.Gln128Ter	p.Q128*	ENST00000439151	NM_022455.4	128	Cag/Tag																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324862	31324863	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	GG			P-0060597-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			71	407	528	0	ENST00000412585.2:c.73_73+1inv		p.X25_splice	ENST00000412585	NM_005514.6	25																																																																																
BRAF	673	MSKCC	GRCh37	7	140477794	140477794	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0060600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	127	356	0	ENST00000288602.6:c.1514T>A	p.Leu505His	p.L505H	ENST00000288602	NM_004333.4	505	cTc/cAc																																																																															
WT1	7490	MSKCC	GRCh37	11	32439190	32439192	+	inframe_deletion	In_Frame_Del	DEL	ATA	ATA	-			P-0060600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	63	441	0	ENST00000332351.3:c.881_883del	p.Leu294del	p.L294del	ENST00000332351	NM_024426.4	294	tTATac/tac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060714	38060714	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			758	294	767	0	ENST00000250448.2:c.1275A>C	p.Gln425His	p.Q425H	ENST00000250448	NM_004496.3	425	caA/caC																																																																															
MGA	23269	MSKCC	GRCh37	15	42021515	42021515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			731	91	516	0	ENST00000219905.7:c.3811C>T	p.His1271Tyr	p.H1271Y	ENST00000219905	NM_001164273.1	1271	Cat/Tat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178596	56178596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060600-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	178	514	0	ENST00000399503.3:c.3569C>T	p.Ala1190Val	p.A1190V	ENST00000399503	NM_005921.1	1190	gCa/gTa																																																																															
RB1	5925	MSKCC	GRCh37	13	48939075	48939076	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0060605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			44	139	161	0	ENST00000267163.4:c.909dup	p.Gly304TrpfsTer6	p.G304Wfs*6	ENST00000267163	NM_000321.2	303	ctt/cTtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0060605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			110	357	502	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128028991	128029007	+	frameshift_variant	Frame_Shift_Del	DEL	GACATTTGCTTCCGGCA	GACATTTGCTTCCGGCA	-			P-0060605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			236	240	389	0	ENST00000285398.2:c.1850_1866del	p.Leu617ProfsTer25	p.L617Pfs*25	ENST00000285398	NM_000122.1	617	cTGCCGGAAGCAAATGTC/c																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0060605-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	1555	384	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510281	187510281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060615-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			755	141	650	0	ENST00000441802.2:c.13232C>T	p.Pro4411Leu	p.P4411L	ENST00000441802	NM_005245.3	4411	cCc/cTc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519969		P-0060617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	41	627	0	ENST00000347630.2:c.392G>C	p.Trp131Ser	p.W131S	ENST00000347630	NM_001007230.1	131	tGg/tCg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851977	63851977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	44	746	0	ENST00000279873.7:c.2755G>A	p.Gly919Ser	p.G919S	ENST00000279873	NM_032199.2	919	Ggc/Agc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374823	118374823	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060617-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	30	736	0	ENST00000534358.1:c.8216A>G	p.Lys2739Arg	p.K2739R	ENST00000534358	NM_005933.3	2739	aAa/aGa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	59	456	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
ALK	238	MSKCC	GRCh37	2	29754890	29754890	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370848188		P-0005145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	71	539	0	ENST00000389048.3:c.1045G>A	p.Val349Ile	p.V349I	ENST00000389048	NM_004304.4	349	Gtc/Atc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65313231	65313231	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	37	427	0	ENST00000342505.4:c.1883A>C	p.His628Pro	p.H628P	ENST00000342505	NM_002227.2	628	cAc/cCc																																																																															
ALK	238	MSKCC	GRCh37	2	29917827	29917827	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	80	646	0	ENST00000389048.3:c.841C>G	p.His281Asp	p.H281D	ENST00000389048	NM_004304.4	281	Cat/Gat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56167795	56167795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	61	560	0	ENST00000399503.3:c.1360G>A	p.Glu454Lys	p.E454K	ENST00000399503	NM_005921.1	454	Gaa/Aaa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482843	67482843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	70	507	0	ENST00000327367.4:c.1247C>T	p.Ser416Phe	p.S416F	ENST00000327367	NM_005902.3	416	tCc/tTc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313222	30313222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	99	739	0	ENST00000262643.3:c.916C>A	p.His306Asn	p.H306N	ENST00000262643	NM_001238.2	306	Cat/Aat																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519893		P-0005342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	86	1201	1	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	87	925	6	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
CDH1	999	MSKCC	GRCh37	16	68846037	68846037	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0005342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			27	55	978	0	ENST00000261769.5:c.1009-1G>C		p.X337_splice	ENST00000261769	NM_004360.3	337																																																																																
PTCH1	5727	MSKCC	GRCh37	9	98218673	98218673	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368417828		P-0006937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	37	263	0	ENST00000331920.6:c.3191C>T	p.Thr1064Met	p.T1064M	ENST00000331920	NM_000264.3	1064	aCg/aTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68771330	68771330	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	82	298	0	ENST00000261769.5:c.12G>A	p.Trp4Ter	p.W4*	ENST00000261769	NM_004360.3	4	tgG/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	132	382	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	93	304	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0011442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			21	59	183	0	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	235	598	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89693002	89693003	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	93	372	0	ENST00000371953.3:c.491dup	p.Val166SerfsTer14	p.V166Sfs*14	ENST00000371953	NM_000314.4	162	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs397516435		P-0012567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	389	820	0	ENST00000269305.4:c.586C>G	p.Arg196Gly	p.R196G	ENST00000269305	NM_001126112.2	196	Cga/Gga																																																																															
ATR	545	MSKCC	GRCh37	3	142231165	142231165	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	399	813	1	ENST00000350721.4:c.4789C>A	p.Gln1597Lys	p.Q1597K	ENST00000350721	NM_001184.3	1597	Cag/Aag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858199	9858199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1266	192	973	0	ENST00000330684.3:c.3202G>A	p.Ala1068Thr	p.A1068T	ENST00000330684	NM_001134407.1	1068	Gcc/Acc																																																																															
ATRX	546	MSKCC	GRCh37	X	76874403	76874403	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	174	984	0	ENST00000373344.5:c.5319T>G	p.Ile1773Met	p.I1773M	ENST00000373344	NM_000489.3	1773	atT/atG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	112	401	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519976		P-0014232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1453	287	835	0	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212484000	212484000	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1369649105		P-0014232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	63	277	0	ENST00000342788.4:c.2203G>T	p.Gly735Cys	p.G735C	ENST00000342788	NM_005235.2	735	Ggt/Tgt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47677762	47677762	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	88	363	0	ENST00000347630.2:c.1103G>T	p.Arg368Leu	p.R368L	ENST00000347630	NM_001007230.1	368	cGc/cTc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610641	52610641	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	89	369	1	ENST00000394830.3:c.3532G>T	p.Glu1178Ter	p.E1178*	ENST00000394830	NM_018313.4	1178	Gag/Tag																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149452957	149452957	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	80	448	0	ENST00000286301.3:c.989G>C	p.Gly330Ala	p.G330A	ENST00000286301	NM_005211.3	330	gGc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781504		P-0015058-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			259	231	736	0	ENST00000269305.4:c.314G>A	p.Gly105Asp	p.G105D	ENST00000269305	NM_001126112.2	105	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015058-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			101	49	156	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112176863	112176863	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015058-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			112	89	296	0	ENST00000257430.4:c.5572C>T	p.Arg1858Ter	p.R1858*	ENST00000257430	NM_000038.5	1858	Cga/Tga																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46509479	46509479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139622524		P-0015058-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			412	330	366	3	ENST00000262741.5:c.1252C>T	p.Pro418Ser	p.P418S	ENST00000262741	NM_003629.3	418	Ccc/Tcc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229398	98229398	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0015058-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			324	73	220	0	ENST00000331920.6:c.2560G>T	p.Gly854Ter	p.G854*	ENST00000331920	NM_000264.3	854	Gga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498422	89498422	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	74	283	1	ENST00000336596.2:c.2394C>A	p.Tyr798Ter	p.Y798*	ENST00000336596	NM_005233.5	798	taC/taA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACCCTC			P-0016886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	127	478	0	ENST00000275493.2:c.2315_2316insTCACAACCC	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	gac/gACAACCCTCac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923065	39923065	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	222	587	0	ENST00000378444.4:c.3643A>T	p.Arg1215Ter	p.R1215*	ENST00000378444	NM_001123385.1	1215	Aga/Tga																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53254033	53254085	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	CTCCGGTGGCGGTAGGAAATCGTCGGACCCCGGCTCCATGGTGGGCCCGAGGT	CTCCGGTGGCGGTAGGAAATCGTCGGACCCCGGCTCCATGGTGGGCCCGAGGT	-			P-0016886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	102	497	0	ENST00000375401.3:c.-14_39del		p.*5*	ENST00000375401	NM_004187.3																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	289	428	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509436	106509436	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200175951		P-0017593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	471	630	0	ENST00000359195.3:c.1430G>A	p.Arg477His	p.R477H	ENST00000359195	NM_002649.2	477	cGt/cAt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625456	69625456	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781938977		P-0017593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	443	599	0	ENST00000334134.2:c.337G>A	p.Ala113Thr	p.A113T	ENST00000334134	NM_005247.2	113	Gcc/Acc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	531	940	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																															
RET	5979	MSKCC	GRCh37	10	43622074	43622074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200989078		P-0017593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	410	594	0	ENST00000355710.3:c.3091G>A	p.Asp1031Asn	p.D1031N	ENST00000355710	NM_020975.4	1031	Gac/Aac																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117888	70117888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	352	420	1	ENST00000245479.2:c.356C>T	p.Ala119Val	p.A119V	ENST00000245479	NM_000346.3	119	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112128158	112128159	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	254	449	0	ENST00000257430.4:c.663dup	p.Gln222SerfsTer30	p.Q222Sfs*30	ENST00000257430	NM_000038.5	221	att/aTtt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372301	55372301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1721	320	404	1	ENST00000297316.4:c.991G>A	p.Gly331Arg	p.G331R	ENST00000297316	NM_022454.3	331	Gga/Aga																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391112	139391112	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	190	308	0	ENST00000277541.6:c.7079C>A	p.Ser2360Tyr	p.S2360Y	ENST00000277541	NM_017617.3	2360	tCc/tAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0020130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	45	972	1	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115435	115115437	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-	rs1319662056		P-0020130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	31	951	0	ENST00000257566.3:c.889_891del	p.Asn297del	p.N297del	ENST00000257566	NM_016569.3	297	AAC/-																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644856	67644856	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	56	915	0	ENST00000264010.4:c.124del	p.Gln42ArgfsTer20	p.Q42Rfs*20	ENST00000264010	NM_006565.3	41	Ccc/cc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120674	115120675	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	52	1171	1	ENST00000257566.3:c.331_332insT	p.Glu111ValfsTer27	p.E111Vfs*27	ENST00000257566	NM_016569.3	111	gaa/gTaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0020609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	67	591	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0020609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	68	633	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970896	21970900	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CTCAC	CTCAC	GTGA			P-0020609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	79	705	2	ENST00000304494.5:c.457+1_457+5delinsTCAC		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0021000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	96	454	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																															
RHOA	387	MSKCC	GRCh37	3	49405936	49405936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	26	764	2	ENST00000418115.1:c.202C>T	p.Arg68Cys	p.R68C	ENST00000418115	NM_001664.2	68	Cgc/Tgc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3801805	3801806	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	AC			P-0021000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	77	776	1	ENST00000262367.5:c.3699_3700dup	p.Tyr1234CysfsTer17	p.Y1234Cfs*17	ENST00000262367	NM_004380.2	1234	tat/tGTat																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782316	9782316	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	75	779	0	ENST00000377346.4:c.2249C>A	p.Thr750Asn	p.T750N	ENST00000377346	NM_005026.3	750	aCc/aAc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46532622	46532622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	138	564	0	ENST00000262741.5:c.456del	p.Asp153MetfsTer2	p.D153Mfs*2	ENST00000262741	NM_003629.3	152	ctT/ct																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612771	228612771	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	228	782	0	ENST00000366696.1:c.256C>G	p.Gln86Glu	p.Q86E	ENST00000366696	NM_003493.2	86	Cag/Gag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948782	71948782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	301	843	0	ENST00000298229.2:c.3494C>T	p.Pro1165Leu	p.P1165L	ENST00000298229	NM_001567.3	1165	cCc/cTc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	404952	404952	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	80	674	0	ENST00000399788.2:c.4242C>A	p.Ser1414Arg	p.S1414R	ENST00000399788	NM_001042603.1	1414	agC/agA																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082286	16082286	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	118	849	0	ENST00000281043.3:c.100G>C	p.Asp34His	p.D34H	ENST00000281043	NM_005378.4	34	Gac/Cac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	85	530	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0024388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	80	459	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0024388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	124	614	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0024388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	66	402	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074435	8074435	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs980250925		P-0024388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	24	252	2	ENST00000377482.5:c.224C>T	p.Pro75Leu	p.P75L	ENST00000377482	NM_018948.3	75	cCg/cTg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275439	38275439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	125	676	0	ENST00000425967.3:c.1594G>T	p.Asp532Tyr	p.D532Y	ENST00000425967	NM_001174067.1	532	Gac/Tac																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223466	53223466	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	70	596	0	ENST00000375401.3:c.3893C>G	p.Ser1298Cys	p.S1298C	ENST00000375401	NM_004187.3	1298	tCt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	307	666	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0024835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	410	647	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72076745	72076745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	338	644	1	ENST00000357731.5:c.752C>T	p.Pro251Leu	p.P251L	ENST00000357731	NM_173808.2	251	cCg/cTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222730	5222730	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374875451		P-0024835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	319	433	1	ENST00000357368.4:c.3073G>A	p.Val1025Ile	p.V1025I	ENST00000357368	NM_002850.3	1025	Gtc/Atc																																																																															
SMO	6608	MSKCC	GRCh37	7	128829066	128829066	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs41304185		P-0024835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			15	13	9	0	ENST00000249373.3:c.74A>G	p.Asp25Gly	p.D25G	ENST00000249373	NM_005631.4	25	gAc/gGc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89816191	89816191	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1957	388	580	0	ENST00000389301.3:c.3186del	p.Trp1063GlyfsTer14	p.W1063Gfs*14	ENST00000389301	NM_000135.2	1062	ggG/gg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780830	9780830	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1185305370		P-0025396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	105	532	2	ENST00000377346.4:c.1552C>T	p.Arg518Trp	p.R518W	ENST00000377346	NM_005026.3	518	Cgg/Tgg																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39305329	39305329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			533	55	490	0	ENST00000373001.3:c.1096G>T	p.Val366Phe	p.V366F	ENST00000373001	NM_022157.3	366	Gtt/Ttt																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117690405	117690405	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0025396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			322	50	375	0	ENST00000369458.3:c.725-1G>T		p.X242_splice	ENST00000369458	NM_024626.3	242																																																																																
KDM5A	5927	MSKCC	GRCh37	12	464379	464379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			568	51	546	1	ENST00000399788.2:c.815C>T	p.Ser272Leu	p.S272L	ENST00000399788	NM_001042603.1	272	tCa/tTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428259	49428259	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			490	65	530	0	ENST00000301067.7:c.10441G>A	p.Glu3481Lys	p.E3481K	ENST00000301067	NM_003482.3	3481	Gag/Aag																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38614571	38614571	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			546	57	580	0	ENST00000299084.4:c.337G>C	p.Asp113His	p.D113H	ENST00000299084	NM_152594.2	113	Gat/Cat																																																																															
BLM	641	MSKCC	GRCh37	15	91292893	91292893	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775197136		P-0025396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			631	75	551	0	ENST00000355112.3:c.395G>A	p.Arg132Gln	p.R132Q	ENST00000355112	NM_000057.2	132	cGg/cAg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646346	3646346	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1202254236		P-0025396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			576	53	663	0	ENST00000294008.3:c.1732G>C	p.Glu578Gln	p.E578Q	ENST00000294008	NM_032444.2	578	Gag/Cag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916146	9916146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			547	50	472	0	ENST00000330684.3:c.2143G>A	p.Asp715Asn	p.D715N	ENST00000330684	NM_001134407.1	715	Gac/Aac																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244808	41244808	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			621	85	697	0	ENST00000357654.3:c.2740G>C	p.Glu914Gln	p.E914Q	ENST00000357654	NM_007294.3	914	Gag/Cag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216751	2216751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			396	40	525	0	ENST00000398665.3:c.2395G>A	p.Glu799Lys	p.E799K	ENST00000398665	NM_032482.2	799	Gag/Aag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216640	36216640	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			624	65	553	0	ENST00000222270.7:c.3806A>G	p.Glu1269Gly	p.E1269G	ENST00000222270	NM_014727.1	1269	gAg/gGg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082466	16082466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	63	578	0	ENST00000281043.3:c.280G>A	p.Glu94Lys	p.E94K	ENST00000281043	NM_005378.4	94	Gag/Aag																																																																															
ALK	238	MSKCC	GRCh37	2	29443680	29443680	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			454	70	463	0	ENST00000389048.3:c.3537T>G	p.Ile1179Met	p.I1179M	ENST00000389048	NM_004304.4	1179	atT/atG																																																																															
REL	5966	MSKCC	GRCh37	2	61144032	61144032	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			454	41	408	0	ENST00000295025.8:c.415G>C	p.Asp139His	p.D139H	ENST00000295025	NM_002908.2	139	Gat/Cat																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021124	31021124	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748644253		P-0025396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			829	49	474	0	ENST00000375687.4:c.1123G>A	p.Val375Met	p.V375M	ENST00000375687	NM_015338.5	375	Gtg/Atg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187530381	187530381	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753202486		P-0025396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	84	347	1	ENST00000441802.2:c.10162G>A	p.Val3388Ile	p.V3388I	ENST00000441802	NM_005245.3	3388	Gtc/Atc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541457	187541457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			438	39	429	1	ENST00000441802.2:c.6283G>A	p.Glu2095Lys	p.E2095K	ENST00000441802	NM_005245.3	2095	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628340	187628340	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs536104649		P-0025396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			566	79	583	0	ENST00000441802.2:c.2642G>A	p.Arg881His	p.R881H	ENST00000441802	NM_005245.3	881	cGc/cAc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497253	149497253	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			470	75	511	0	ENST00000261799.4:c.3065T>G	p.Ile1022Ser	p.I1022S	ENST00000261799	NM_002609.3	1022	aTc/aGc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637558	176637558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			545	78	532	0	ENST00000439151.2:c.2158G>A	p.Glu720Lys	p.E720K	ENST00000439151	NM_022455.4	720	Gag/Aag																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205449	38205449	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			889	93	729	1	ENST00000317025.8:c.241G>T	p.Glu81Ter	p.E81*	ENST00000317025	NM_023034.1	81	Gaa/Taa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370965	55370965	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			372	50	517	0	ENST00000297316.4:c.267G>T	p.Gln89His	p.Q89H	ENST00000297316	NM_022454.3	89	caG/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0025449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	572	608	3	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913250		P-0025449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	194	379	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448631	89448631	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0025449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	142	453	0	ENST00000336596.2:c.1594+1G>C		p.X532_splice	ENST00000336596	NM_005233.5	532																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0026468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	202	644	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0026468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	187	638	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0026468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	86	279	1	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916205	9916205	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs796052563		P-0026468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	104	505	0	ENST00000330684.3:c.2084G>A	p.Arg695Gln	p.R695Q	ENST00000330684	NM_001134407.1	695	cGg/cAg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31468128	31468128	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	164	564	0	ENST00000344624.3:c.2284T>C	p.Phe762Leu	p.F762L	ENST00000344624		762	Ttc/Ctc																																																																															
APC	324	MSKCC	GRCh37	5	112175733	112175736	+	frameshift_variant	Frame_Shift_Del	DEL	TTCT	TTCT	-			P-0026468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	86	356	0	ENST00000257430.4:c.4443_4446del	p.Leu1482GlnfsTer24	p.L1482Qfs*24	ENST00000257430	NM_000038.5	1481	gTTCTt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0028809-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			770	226	826	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0028809-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			429	92	441	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028809-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			734	191	683	0	ENST00000269305.4:c.645T>A	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028809-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			565	35	565	0	ENST00000342988.3:c.1055G>T	p.Gly352Val	p.G352V	ENST00000342988	NM_005359.5	352	gGa/gTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1219381	1219381	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028809-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			346	129	623	0	ENST00000326873.7:c.433G>T	p.Glu145Ter	p.E145*	ENST00000326873	NM_000455.4	145	Gag/Tag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458740	120458740	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028809-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			454	61	584	0	ENST00000256646.2:c.6605C>G	p.Ser2202Cys	p.S2202C	ENST00000256646	NM_024408.3	2202	tCt/tGt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21630745	21630745	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028809-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			416	106	377	1	ENST00000421138.2:c.859T>A	p.Tyr287Asn	p.Y287N	ENST00000421138		287	Tat/Aat																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197716	66197716	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs563678006		P-0028809-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			532	52	483	0	ENST00000273854.3:c.2983G>T	p.Asp995Tyr	p.D995Y	ENST00000273854	NM_004439.5	995	Gac/Tac																																																																															
ROS1	6098	MSKCC	GRCh37	6	117647402	117647402	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs765553432		P-0028809-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			741	45	598	0	ENST00000368508.3:c.5542A>T	p.Ile1848Phe	p.I1848F	ENST00000368508	NM_002944.2	1848	Att/Ttt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	58	267	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0029708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	361	593	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
INHA	3623	MSKCC	GRCh37	2	220437230	220437230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs960266462		P-0029708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1233	291	1139	4	ENST00000243786.2:c.134C>T	p.Ala45Val	p.A45V	ENST00000243786	NM_002191.3	45	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175096	112175097	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0029708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	41	187	0	ENST00000257430.4:c.3807_3808del	p.Ile1269MetfsTer6	p.I1269Mfs*6	ENST00000257430	NM_000038.5	1269	ATa/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0029708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	342	634	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
BRIP1	83990	MSKCC	GRCh37	17	59820411	59820411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	258	577	0	ENST00000259008.2:c.2342C>T	p.Thr781Ile	p.T781I	ENST00000259008	NM_032043.2	781	aCa/aTa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281248	15281248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754875491		P-0029708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	523	997	1	ENST00000263388.2:c.5008G>A	p.Glu1670Lys	p.E1670K	ENST00000263388	NM_000435.2	1670	Gag/Aag																																																																															
ATR	545	MSKCC	GRCh37	3	142176579	142176579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	50	582	0	ENST00000350721.4:c.7522C>T	p.Pro2508Ser	p.P2508S	ENST00000350721	NM_001184.3	2508	Cca/Tca																																																																															
ATR	545	MSKCC	GRCh37	3	142255011	142255011	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	66	323	0	ENST00000350721.4:c.3758A>G	p.Tyr1253Cys	p.Y1253C	ENST00000350721	NM_001184.3	1253	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112154907	112154907	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	152	612	0	ENST00000257430.4:c.1178C>A	p.Ser393Ter	p.S393*	ENST00000257430	NM_000038.5	393	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0031282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	360	684	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
B2M	567	MSKCC	GRCh37	15	45007689	45007690	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0031282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	129	376	0	ENST00000558401.1:c.137_138del	p.Tyr46CysfsTer10	p.Y46Cfs*10	ENST00000558401	NM_004048.2	46	TAt/t																																																																															
B2M	567	MSKCC	GRCh37	15	45003812	45003812	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0031282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	94	389	0	ENST00000558401.1:c.67+1G>A		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
SETD8	387893	MSKCC	GRCh37	12	123889560	123889560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	34	156	0	ENST00000330479.4:c.787G>A	p.Ala263Thr	p.A263T	ENST00000330479	NM_020382.3	263	Gca/Aca																																																																															
B2M	567	MSKCC	GRCh37	15	45007761	45007761	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	25	397	0	ENST00000558401.1:c.208G>T	p.Glu70Ter	p.E70*	ENST00000558401	NM_004048.2	70	Gag/Tag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41256204	41256204	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	318	445	0	ENST00000357654.3:c.376C>G	p.Gln126Glu	p.Q126E	ENST00000357654	NM_007294.3	126	Caa/Gaa																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656915	45656915	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs558943057		P-0031282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	123	729	1	ENST00000407780.3:c.241C>T	p.Arg81Trp	p.R81W	ENST00000407780	NM_001283052.1	81	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175391	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	268	301	0	ENST00000257430.4:c.4100dup	p.Thr1368AspfsTer7	p.T1368Dfs*7	ENST00000257430	NM_000038.5	1367	cag/cAag																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513452	149513452	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757668250		P-0031282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	153	603	0	ENST00000261799.4:c.751C>T	p.Arg251Cys	p.R251C	ENST00000261799	NM_002609.3	251	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	G	rs1131691003		P-0031766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	130	511	0	ENST00000269305.4:c.96+1G>C		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																																
BBC3	27113	MSKCC	GRCh37	19	47735817	47735817	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	76	503	0	ENST00000449228.1:c.43G>C	p.Val15Leu	p.V15L	ENST00000449228	NM_001127240.2	15	Gtg/Ctg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0031810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	24	588	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193121556	193121556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	21	331	0	ENST00000367435.3:c.954G>A	p.Met318Ile	p.M318I	ENST00000367435	NM_024529.4	318	atG/atA																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489526	40489526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	41	604	0	ENST00000264657.5:c.724G>A	p.Asp242Asn	p.D242N	ENST00000264657	NM_139276.2	242	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	115	667	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0031885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	279	922	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	67	122	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0031918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	212	388	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767342		P-0031918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	47	134	0	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971204	21971208	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TGACC	TGACC	-			P-0031918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	63	170	0	ENST00000304494.5:c.151-1_154del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
ALK	238	MSKCC	GRCh37	2	29455298	29455298	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376091121		P-0031918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	65	252	0	ENST00000389048.3:c.2504C>T	p.Pro835Leu	p.P835L	ENST00000389048	NM_004304.4	835	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0032081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	100	188	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0032081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	126	376	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0032081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	125	396	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2185868	2185868	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	192	523	1	ENST00000398665.3:c.140A>T	p.Glu47Val	p.E47V	ENST00000398665	NM_032482.2	47	gAa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0032081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	131	377	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250823	153250823	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1159697496		P-0032081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	83	258	0	ENST00000281708.4:c.1236+1G>A		p.X412_splice	ENST00000281708	NM_033632.3	412																																																																																
AXIN2	8313	MSKCC	GRCh37	17	63554192	63554192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	180	541	0	ENST00000307078.5:c.547G>A	p.Glu183Lys	p.E183K	ENST00000307078	NM_004655.3	183	Gag/Aag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120504	70120505	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TACA			P-0032081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	172	663	0	ENST00000245479.2:c.1507_1510dup	p.Thr504IlefsTer75	p.T504Ifs*75	ENST00000245479	NM_000346.3	502	-/TACA																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72897475	72897475	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	48	181	0	ENST00000325599.8:c.17T>G	p.Phe6Cys	p.F6C	ENST00000325599	NM_018130.2	6	tTc/tGc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662441	117662441	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs761904834		P-0032081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	118	396	0	ENST00000368508.3:c.4936A>G	p.Thr1646Ala	p.T1646A	ENST00000368508	NM_002944.2	1646	Aca/Gca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	189	459	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0032287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	189	388	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175606	112175606	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	49	276	0	ENST00000257430.4:c.4316del	p.Pro1439LeufsTer34	p.P1439Lfs*34	ENST00000257430	NM_000038.5	1439	Cct/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7579419	7579420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0032287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	250	685	0	ENST00000269305.4:c.266_267dup	p.Ser90ProfsTer34	p.S90Pfs*34	ENST00000269305	NM_001126112.2	89	-/CC																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165141	47165141	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372869995		P-0032287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	53	365	0	ENST00000409792.3:c.985C>T	p.Arg329Trp	p.R329W	ENST00000409792	NM_014159.6	329	Cgg/Tgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151917629	151917629	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	151	644	0	ENST00000262189.6:c.3691G>T	p.Gly1231Cys	p.G1231C	ENST00000262189	NM_170606.2	1231	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0032597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	222	698	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0032597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	243	849	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
TET1	80312	MSKCC	GRCh37	10	70451329	70451329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	131	637	0	ENST00000373644.4:c.6169C>A	p.Pro2057Thr	p.P2057T	ENST00000373644	NM_030625.2	2057	Ccc/Acc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32936781	32936781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	145	463	0	ENST00000380152.3:c.7927G>A	p.Ala2643Thr	p.A2643T	ENST00000380152		2643	Gct/Act																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265805	41266404	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATG	CTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATG	-			P-0032597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	99	86	0	ENST00000349496.5:c.14-208_242-37del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
E2F3	1871	MSKCC	GRCh37	6	20481599	20481599	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	71	282	0	ENST00000346618.3:c.668A>G	p.Asn223Ser	p.N223S	ENST00000346618	NM_001949.4	223	aAc/aGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	20	530	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0033856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	147	356	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112175141	112175141	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	180	212	0	ENST00000257430.4:c.3850G>T	p.Glu1284Ter	p.E1284*	ENST00000257430	NM_000038.5	1284	Gaa/Taa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372173	55372173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	79	312	0	ENST00000297316.4:c.863C>T	p.Ala288Val	p.A288V	ENST00000297316	NM_022454.3	288	gCg/gTg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981565	201981565	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs878935651		P-0033856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	98	639	0	ENST00000359651.3:c.478+1G>A		p.X160_splice	ENST00000359651		160																																																																																
SOX9	6662	MSKCC	GRCh37	17	70119086	70119086	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	122	350	0	ENST00000245479.2:c.658G>T	p.Glu220Ter	p.E220*	ENST00000245479	NM_000346.3	220	Gag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720817	89720818	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	G			P-0034127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	76	199	0	ENST00000371953.3:c.968_969delinsG	p.Asn323ArgfsTer21	p.N323Rfs*21	ENST00000371953	NM_000314.4	323	aAT/aG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0034127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	233	583	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	234	624	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110319	3110319	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	198	511	0	ENST00000078429.4:c.309C>A	p.Tyr103Ter	p.Y103*	ENST00000078429	NM_002067.2	103	taC/taA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	9	364	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	56	176	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0036767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	103	465	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743943	40743943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs763964405		P-0036767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	50	271	0	ENST00000373198.4:c.3052C>T	p.Arg1018Ter	p.R1018*	ENST00000373198	NM_133170.3	1018	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0036767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	27	160	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519896		P-0036767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	34	125	0	ENST00000281708.4:c.1514G>T	p.Arg505Leu	p.R505L	ENST00000281708	NM_033632.3	505	cGc/cTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29652957	29652957	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs775874538		P-0036767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	59	220	0	ENST00000358273.4:c.4955A>G	p.Asn1652Ser	p.N1652S	ENST00000358273	NM_001042492.2	1652	aAt/aGt																																																																															
MED12	9968	MSKCC	GRCh37	X	70354234	70354234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	129	685	0	ENST00000374080.3:c.4645C>T	p.Arg1549Cys	p.R1549C	ENST00000374080		1549	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1131691023		P-0037028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	376	733	0	ENST00000269305.4:c.470T>C	p.Val157Ala	p.V157A	ENST00000269305	NM_001126112.2	157	gTc/gCc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943359	71943359	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775327646		P-0037028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	142	646	0	ENST00000298229.2:c.1691C>T	p.Ser564Leu	p.S564L	ENST00000298229	NM_001567.3	564	tCg/tTg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782156	9782156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	129	616	0	ENST00000377346.4:c.2179G>T	p.Ala727Ser	p.A727S	ENST00000377346	NM_005026.3	727	Gcc/Tcc																																																																															
CCND1	595	MSKCC	GRCh37	11	69462854	69462854	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	263	682	0	ENST00000227507.2:c.667T>G	p.Phe223Val	p.F223V	ENST00000227507	NM_053056.2	223	Ttc/Gtc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94212852	94212852	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	40	489	0	ENST00000323929.3:c.390C>G	p.Asp130Glu	p.D130E	ENST00000323929	NM_005591.3	130	gaC/gaG																																																																															
RB1	5925	MSKCC	GRCh37	13	49039143	49039143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	39	270	0	ENST00000267163.4:c.2221C>A	p.Arg741Ser	p.R741S	ENST00000267163	NM_000321.2	741	Cgt/Agt																																																																															
CIC	23152	MSKCC	GRCh37	19	42794890	42794890	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	58	629	0	ENST00000575354.2:c.1970A>C	p.Tyr657Ser	p.Y657S	ENST00000575354	NM_015125.3	657	tAt/tCt																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945316	54945316	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	57	335	0	ENST00000312783.6:c.1110G>C	p.Gln370His	p.Q370H	ENST00000312783	NM_198436.1	370	caG/caC																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52668656	52668656	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0037028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	123	572	0	ENST00000394830.3:c.1263C>G	p.Tyr421Ter	p.Y421*	ENST00000394830	NM_018313.4	421	taC/taG																																																																															
APC	324	MSKCC	GRCh37	5	112175407	112175407	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	134	373	0	ENST00000257430.4:c.4116del	p.Pro1373LeufsTer42	p.P1373Lfs*42	ENST00000257430	NM_000038.5	1372	ccA/cc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370847	55370847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	87	370	2	ENST00000297316.4:c.149C>T	p.Ala50Val	p.A50V	ENST00000297316	NM_022454.3	50	gCg/gTg																																																																															
LYN	4067	MSKCC	GRCh37	8	56866483	56866483	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1387477088		P-0037124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	106	584	0	ENST00000519728.1:c.730C>T	p.Arg244Trp	p.R244W	ENST00000519728	NM_002350.3	244	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0037241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	156	538	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
CASP8	841	MSKCC	GRCh37	2	202122968	202122968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	102	387	0	ENST00000358485.4:c.14G>T	p.Arg5Ile	p.R5I	ENST00000358485	NM_001080125.1	5	aGa/aTa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519972		P-0037255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	47	458	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs397516435		P-0037255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	36	536	0	ENST00000269305.4:c.586C>G	p.Arg196Gly	p.R196G	ENST00000269305	NM_001126112.2	196	Cga/Gga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257007	16257007	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	76	563	0	ENST00000375759.3:c.4273del	p.Ser1425LeufsTer2	p.S1425Lfs*2	ENST00000375759	NM_015001.2	1424	agT/ag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47084125	47084125	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	55	554	0	ENST00000409792.3:c.7164del	p.Ile2389LeufsTer22	p.I2389Lfs*22	ENST00000409792	NM_014159.6	2388	acC/ac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0037324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	33	323	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955096	17955096	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201650430		P-0037324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	60	731	0	ENST00000458235.1:c.131C>T	p.Ser44Phe	p.S44F	ENST00000458235	NM_000215.3	44	tCc/tTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177075	56177075	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0037324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	30	362	0	ENST00000399503.3:c.2345C>G	p.Ser782Ter	p.S782*	ENST00000399503	NM_005921.1	782	tCa/tGa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151880076	151880076	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	87	488	0	ENST00000262189.6:c.5248G>T	p.Glu1750Ter	p.E1750*	ENST00000262189	NM_170606.2	1750	Gaa/Taa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922813	44922813	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	36	476	0	ENST00000377967.4:c.1675del	p.Arg559ValfsTer34	p.R559Vfs*34	ENST00000377967	NM_021140.2	558	gtC/gt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0037414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	83	249	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
YES1	7525	MSKCC	GRCh37	18	751704	751704	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs368508541		P-0037414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	38	378	0	ENST00000314574.4:c.371+1G>A		p.X124_splice	ENST00000314574	NM_005433.3	124																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72828630	72828630	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	191	632	0	ENST00000268489.5:c.7951G>T	p.Glu2651Ter	p.E2651*	ENST00000268489	NM_006885.3	2651	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0037415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	51	243	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0037415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	134	484	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9787076	9787078	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0037415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	51	279	0	ENST00000377346.4:c.3109_3111del	p.Asn1037del	p.N1037del	ENST00000377346	NM_005026.3	1036	cACAac/cac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	142	517	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178643	56178643	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	104	316	0	ENST00000399503.3:c.3617del	p.Pro1206LeufsTer39	p.P1206Lfs*39	ENST00000399503	NM_005921.1	1206	Cct/ct																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183339	56183422	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCACCTGAGGTGAGAAGCATCTTTGAGTGTGATGACAGAAAATATTTTGGAATTCTGTGTAACAGCATTATACTAAATTATCTT	GCACCTGAGGTGAGAAGCATCTTTGAGTGTGATGACAGAAAATATTTTGGAATTCTGTGTAACAGCATTATACTAAATTATCTT	-			P-0037480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	116	380	0	ENST00000399503.3:c.4252_4257+78del		p.X1418_splice	ENST00000399503	NM_005921.1	1418																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151851097	151851097	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0037480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	56	230	0	ENST00000262189.6:c.12274G>T	p.Glu4092Ter	p.E4092*	ENST00000262189	NM_170606.2	4092	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0037963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	196	501	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0037963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	33	680	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257226	16257226	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	56	644	0	ENST00000375759.3:c.4491G>C	p.Lys1497Asn	p.K1497N	ENST00000375759	NM_015001.2	1497	aaG/aaC																																																																															
MEN1	4221	MSKCC	GRCh37	11	64574493	64574493	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	296	672	0	ENST00000337652.1:c.917T>G	p.Leu306Arg	p.L306R	ENST00000337652	NM_130803.2	306	cTc/cGc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11298501	11298501	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	58	622	0	ENST00000361445.4:c.1960G>T	p.Asp654Tyr	p.D654Y	ENST00000361445	NM_004958.3	654	Gat/Tat																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66518975	66518975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	50	551	4	ENST00000358598.2:c.256C>T	p.Pro86Ser	p.P86S	ENST00000358598	NM_212471.2	86	Cca/Tca																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285270	212285270	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	237	500	0	ENST00000342788.4:c.3031G>C	p.Glu1011Gln	p.E1011Q	ENST00000342788	NM_005235.2	1011	Gag/Cag																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495747	72495747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	232	536	1	ENST00000477973.2:c.323G>T	p.Ala109Ser	p.A109S	ENST00000477973	NM_012234.5	109	Gca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0038170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	176	564	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0038170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	78	215	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591755	48591872	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCATGGGAGGATGTTCTTTCCCATTTATTTCCTATAGCTCCTGAGTATTGGTGTTCCATTGCTTACTTTGAAATGGATGTTCAGGTAGGAGAGACATTTAAGGTTCCTTCAAGCTGC	CTCATGGGAGGATGTTCTTTCCCATTTATTTCCTATAGCTCCTGAGTATTGGTGTTCCATTGCTTACTTTGAAATGGATGTTCAGGTAGGAGAGACATTTAAGGTTCCTTCAAGCTGC	-			P-0038170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	10	246	0	ENST00000342988.3:c.956-37_1036del		p.X319_splice	ENST00000342988	NM_005359.5	319																																																																																
GATA3	2625	MSKCC	GRCh37	10	8111461	8111483	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGTGCGAACTGTCAGACCACC	CCTGTGCGAACTGTCAGACCACC	-			P-0038849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	71	462	0	ENST00000346208.3:c.947_969del	p.Ser316TyrfsTer28	p.S316Yfs*28	ENST00000346208		316	tCCTGTGCGAACTGTCAGACCACC/t																																																																															
TET1	80312	MSKCC	GRCh37	10	70406106	70406106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	64	535	0	ENST00000373644.4:c.3620C>T	p.Pro1207Leu	p.P1207L	ENST00000373644	NM_030625.2	1207	cCt/cTt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71945335	71945335	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	57	563	0	ENST00000298229.2:c.2223G>C	p.Lys741Asn	p.K741N	ENST00000298229	NM_001567.3	741	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0038939-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			280	200	786	0	ENST00000269305.4:c.560-1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
PREX2	80243	MSKCC	GRCh37	8	69028089	69028089	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038939-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			516	150	576	0	ENST00000288368.4:c.3248A>T	p.Lys1083Ile	p.K1083I	ENST00000288368	NM_024870.2	1083	aAa/aTa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115875	8115880	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCTT	GCCCTT	A			P-0038939-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			486	236	600	0	ENST00000346208.3:c.1221_1226delinsA	p.Pro408GlnfsTer97	p.P408Qfs*97	ENST00000346208		407	tcGCCCTTc/tcAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	80	354	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0039264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	170	501	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0039264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	85	252	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0039264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	58	279	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480397	89480397	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756739935		P-0039264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	23	243	0	ENST00000336596.2:c.2234G>A	p.Arg745Gln	p.R745Q	ENST00000336596	NM_005233.5	745	cGa/cAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920402	114920402	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	156	401	0	ENST00000543371.1:c.1345del	p.Ala449HisfsTer42	p.A449Hfs*42	ENST00000543371	NM_001198531.1	448	cGg/cg																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316307	14316307	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0039264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	105	453	0	ENST00000256196.4:c.298A>C	p.Ser100Arg	p.S100R	ENST00000256196		100	Agt/Cgt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103519152	103519152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	40	337	0	ENST00000355739.4:c.2490G>T	p.Lys830Asn	p.K830N	ENST00000355739	NM_000123.3	830	aaG/aaT																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703534	47703534	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0039264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	44	461	0	ENST00000233146.2:c.2034T>A	p.Tyr678Ter	p.Y678*	ENST00000233146	NM_000251.2	678	taT/taA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412131	63412132	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0039264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	201	667	0	ENST00000330258.3:c.1034_1035dup	p.Ser346ProfsTer19	p.S346Pfs*19	ENST00000330258	NM_152424.3	345	-/CC																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0039574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	255	523	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0039574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	137	350	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	801	868	0	ENST00000374672.4:c.1225A>C	p.Lys409Gln	p.K409Q	ENST00000374672	NM_004235.4	409	Aag/Cag																																																																															
CDH1	999	MSKCC	GRCh37	16	68849586	68849586	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	294	662	0	ENST00000261769.5:c.1489G>T	p.Glu497Ter	p.E497*	ENST00000261769	NM_004360.3	497	Gag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879888	37879888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	329	768	0	ENST00000269571.5:c.2183C>T	p.Ser728Phe	p.S728F	ENST00000269571		728	tCt/tTt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133883	55133883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	136	373	0	ENST00000257290.5:c.1096G>A	p.Asp366Asn	p.D366N	ENST00000257290	NM_006206.4	366	Gat/Aat																																																																															
ATRX	546	MSKCC	GRCh37	X	76937038	76937038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	55	331	0	ENST00000373344.5:c.3710C>T	p.Ser1237Leu	p.S1237L	ENST00000373344	NM_000489.3	1237	tCa/tTa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114116	115114117	+	splice_donor_variant	Splice_Site	INS	-	-	C			P-0039574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	194	544	0	ENST00000257566.3:c.1099+1dup		p.X367_splice	ENST00000257566	NM_016569.3	367																																																																																
PAK1	5058	MSKCC	GRCh37	11	77043786	77043786	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	233	589	0	ENST00000356341.3:c.1540G>C	p.Glu514Gln	p.E514Q	ENST00000356341	NM_002576.4	514	Gag/Cag																																																																															
ATM	472	MSKCC	GRCh37	11	108202721	108202721	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758128730		P-0039574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	141	389	0	ENST00000278616.4:c.7745G>A	p.Arg2582Lys	p.R2582K	ENST00000278616	NM_000051.3	2582	aGa/aAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434226	49434226	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371053017		P-0039574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	418	918	2	ENST00000301067.7:c.7327C>T	p.Arg2443Cys	p.R2443C	ENST00000301067	NM_003482.3	2443	Cgc/Tgc																																																																															
RB1	5925	MSKCC	GRCh37	13	49030338	49030338	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0039574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	102	241	0	ENST00000267163.4:c.1815-2A>C		p.X605_splice	ENST00000267163	NM_000321.2	605																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3900341	3900341	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	292	690	0	ENST00000262367.5:c.755G>T	p.Gly252Val	p.G252V	ENST00000262367	NM_004380.2	252	gGt/gTt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348650	89348650	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	295	787	0	ENST00000301030.4:c.4300G>T	p.Glu1434Ter	p.E1434*	ENST00000301030	NM_001256183.1	1434	Gag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879654	37879654	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	275	720	0	ENST00000269571.5:c.2029C>G	p.Arg677Gly	p.R677G	ENST00000269571		677	Cga/Gga																																																																															
ALK	238	MSKCC	GRCh37	2	29416370	29416370	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	330	761	1	ENST00000389048.3:c.4583A>T	p.His1528Leu	p.H1528L	ENST00000389048	NM_004304.4	1528	cAc/cTc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046305	128046305	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	236	495	0	ENST00000285398.2:c.958C>G	p.Gln320Glu	p.Q320E	ENST00000285398	NM_000122.1	320	Cag/Gag																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38172292	38172292	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0039574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	147	355	0	ENST00000317025.8:c.2116-1G>A		p.X706_splice	ENST00000317025	NM_023034.1	706																																																																																
PTCH1	5727	MSKCC	GRCh37	9	98229514	98229514	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	36	432	0	ENST00000331920.6:c.2444T>G	p.Ile815Ser	p.I815S	ENST00000331920	NM_000264.3	815	aTc/aGc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4101118	4101118	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769471250		P-0039721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	12	395	3	ENST00000262948.5:c.604G>A	p.Val202Met	p.V202M	ENST00000262948	NM_030662.3	202	Gtg/Atg																																																																															
NBN	4683	MSKCC	GRCh37	8	90960111	90960111	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	32	289	0	ENST00000265433.3:c.1855G>T	p.Glu619Ter	p.E619*	ENST00000265433	NM_002485.4	619	Gaa/Taa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624275	89624276	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	113	491	0	ENST00000371953.3:c.51dup	p.Glu18ArgfsTer26	p.E18Rfs*26	ENST00000371953	NM_000314.4	17	caa/cAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578405	7578406	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0039721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	165	648	0	ENST00000269305.4:c.524_525delinsAT	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGC/cAT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	192	416	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0039858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	462	763	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	73	310	0	ENST00000257430.4:c.4473dup	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																															
WT1	7490	MSKCC	GRCh37	11	32450103	32450103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	186	710	1	ENST00000332351.3:c.709G>A	p.Ala237Thr	p.A237T	ENST00000332351	NM_024426.4	237	Gcg/Acg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38282215	38282215	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	138	551	3	ENST00000425967.3:c.841C>T	p.Arg281Trp	p.R281W	ENST00000425967	NM_001174067.1	281	Cgg/Tgg																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873078	136873078	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	88	440	0	ENST00000241393.3:c.420C>G	p.His140Gln	p.H140Q	ENST00000241393	NM_003467.2	140	caC/caG																																																																															
MLH1	4292	MSKCC	GRCh37	3	37055952	37055952	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	66	372	0	ENST00000231790.2:c.707A>G	p.Lys236Arg	p.K236R	ENST00000231790	NM_000249.3	236	aAa/aGa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0039931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	132	546	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830711	72830712	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCAACTCAAAGCCAAAGTTCT			P-0039931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	128	734	1	ENST00000268489.5:c.5849_5869dup	p.Glu1950_Leu1956dup	p.E1950_L1956dup	ENST00000268489	NM_006885.3	1950	gtc/gAGAACTTTGGCTTTGAGTTGGtc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910569	29910569	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	94	525	0	ENST00000376809.5:c.109T>G	p.Ser37Ala	p.S37A	ENST00000376809	NM_002116.7	37	Tcc/Gcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	79	411	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	147	348	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987204	36987204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	50	576	0	ENST00000354822.5:c.485C>T	p.Ala162Val	p.A162V	ENST00000354822	NM_001079668.2	162	gCg/gTg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46738405	46738405	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	111	476	0	ENST00000371975.4:c.1306G>T	p.Glu436Ter	p.E436*	ENST00000371975	NM_003579.3	436	Gaa/Taa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852740	63852740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	106	457	0	ENST00000279873.7:c.3518C>T	p.Ala1173Val	p.A1173V	ENST00000279873	NM_032199.2	1173	gCc/gTc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81946269	81946269	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	114	695	0	ENST00000359376.3:c.2002G>T	p.Ala668Ser	p.A668S	ENST00000359376	NM_002661.3	668	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578194	7578195	+	inframe_insertion	In_Frame_Ins	INS	-	-	CACCAC			P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	233	677	0	ENST00000269305.4:c.649_654dup	p.Val217_Val218dup	p.V217_V218dup	ENST00000269305	NM_001126112.2	217	-/GTGGTG																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584542	48584542	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	109	466	0	ENST00000342988.3:c.715C>T	p.Gln239Ter	p.Q239*	ENST00000342988	NM_005359.5	239	Cag/Tag																																																																															
AURKA	6790	MSKCC	GRCh37	20	54958048	54958048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	98	251	0	ENST00000312783.6:c.559C>A	p.His187Asn	p.H187N	ENST00000312783	NM_198436.1	187	Cac/Aac																																																																															
ATR	545	MSKCC	GRCh37	3	142275252	142275252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	72	391	0	ENST00000350721.4:c.2051C>T	p.Ser684Phe	p.S684F	ENST00000350721	NM_001184.3	684	tCt/tTt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161744	56161744	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1406908752		P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	41	415	1	ENST00000399503.3:c.1241G>A	p.Arg414His	p.R414H	ENST00000399503	NM_005921.1	414	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112174160	112174160	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	55	379	0	ENST00000257430.4:c.2870del	p.Lys957ArgfsTer8	p.K957Rfs*8	ENST00000257430	NM_000038.5	957	Aag/ag																																																																															
ABL1	25	MSKCC	GRCh37	9	133760441	133760441	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	151	681	0	ENST00000318560.5:c.2764G>T	p.Ala922Ser	p.A922S	ENST00000318560	NM_005157.4	922	Gcg/Tcg																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317467	1317467	+	downstream_gene_variant	3'Flank	SNP	G	G	C	rs778213444		P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	100	699	0				ENST00000381566																																																																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	163	425	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	433	857	2	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119884	70119884	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	169	673	1	ENST00000245479.2:c.886C>T	p.Gln296Ter	p.Q296*	ENST00000245479	NM_000346.3	296	Cag/Tag																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368208	45368208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	93	341	0	ENST00000262160.6:c.1394G>A	p.Ser465Asn	p.S465N	ENST00000262160	NM_005901.5	465	aGc/aAc																																																																															
RRAS	6237	MSKCC	GRCh37	19	50143283	50143283	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1212916232		P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	67	265	0	ENST00000246792.3:c.73C>T	p.Pro25Ser	p.P25S	ENST00000246792	NM_006270.3	25	Ccg/Tcg																																																																															
ALK	238	MSKCC	GRCh37	2	29474129	29474129	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	99	560	0	ENST00000389048.3:c.2046T>A	p.His682Gln	p.H682Q	ENST00000389048	NM_004304.4	682	caT/caA																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	114	548	3	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
MST1	4485	MSKCC	GRCh37	3	49723791	49723791	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	12	15	0	ENST00000449682.2:c.971A>G	p.Gln324Arg	p.Q324R	ENST00000449682	NM_020998.3	324	cAa/cGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	78	444	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	92	475	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	53	254	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	62	259	0	ENST00000257430.4:c.4067C>A	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tAa																																																																															
MED12	9968	MSKCC	GRCh37	X	70338684	70338698	+	inframe_deletion	In_Frame_Del	DEL	AGGACCCCAAACAGA	AGGACCCCAAACAGA	-			P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	113	357	0	ENST00000374080.3:c.84_98del	p.Asp28_Lys32del	p.D28_K32del	ENST00000374080		27	cAGGACCCCAAACAGAag/cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	67	432	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0040030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	46	265	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0040030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	103	465	0				ENST00000310581	NM_198253.2																																																																																	
BRCA1	672	MSKCC	GRCh37	17	41276053	41276053	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs80357406		P-0040030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	44	523	0	ENST00000357654.3:c.61A>G	p.Ile21Val	p.I21V	ENST00000357654	NM_007294.3	21	Atc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0040209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	370	767	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	147	551	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135782172	135782172	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	150	632	0	ENST00000298552.3:c.1384T>C	p.Phe462Leu	p.F462L	ENST00000298552	NM_001162426.1	462	Ttt/Ctt																																																																															
PGR	5241	MSKCC	GRCh37	11	100998507	100998507	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	93	606	0	ENST00000325455.5:c.1295C>G	p.Ser432Cys	p.S432C	ENST00000325455	NM_001202474.3	432	tCc/tGc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26978154	26978154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1445	109	798	2	ENST00000381527.3:c.1331G>A	p.Ser444Asn	p.S444N	ENST00000381527	NM_001260.1	444	aGc/aAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436158	56436158	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs866430107		P-0040209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	500	779	0	ENST00000407977.2:c.979G>T	p.Gly327Ter	p.G327*	ENST00000407977		327	Gga/Tga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637640	176637640	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs779427675		P-0040209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	67	676	0	ENST00000439151.2:c.2240C>A	p.Thr747Lys	p.T747K	ENST00000439151	NM_022455.4	747	aCa/aAa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	81	330	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	55	273	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702265	47702265	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63750508		P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	106	450	0	ENST00000233146.2:c.1861C>T	p.Arg621Ter	p.R621*	ENST00000233146	NM_000251.2	621	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1244	28	784	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039356	47039358	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	256	467	0	ENST00000329236.7:c.754_756del	p.Ser252del	p.S252del	ENST00000329236	NM_001204466.1	250	TCC/-																																																																															
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	36	517	3	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925330	114925330	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368331428		P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	120	546	0	ENST00000543371.1:c.1408G>A	p.Val470Ile	p.V470I	ENST00000543371	NM_001198531.1	470	Gtt/Att																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87482242	87482242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	139	651	0	ENST00000277120.3:c.1529C>T	p.Ser510Leu	p.S510L	ENST00000277120		510	tCg/tTg																																																																															
IL10	3586	MSKCC	GRCh37	1	206945648	206945648	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs570050304		P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	146	542	0	ENST00000423557.1:c.133C>T	p.Arg45Ter	p.R45*	ENST00000423557	NM_000572.2	45	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	166	542	3	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65307280	65307283	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	95	361	0	ENST00000342505.4:c.2405_2408del	p.Lys802ArgfsTer11	p.K802Rfs*11	ENST00000342505	NM_002227.2	802	aAAGAg/ag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464501	25464501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	214	809	1	ENST00000264709.3:c.2012C>T	p.Thr671Met	p.T671M	ENST00000264709	NM_175629.2	671	aCg/aTg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664448	138664448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	195	414	0	ENST00000330315.3:c.1117C>T	p.Arg373Cys	p.R373C	ENST00000330315	NM_023067.3	373	Cgc/Tgc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62326255	62326255	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs559104198		P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1272	320	1209	0	ENST00000508582.2:c.3343G>A	p.Asp1115Asn	p.D1115N	ENST00000508582		1115	Gac/Aac																																																																															
FLT4	2324	MSKCC	GRCh37	5	180040015	180040015	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs564369853		P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1424	248	984	1	ENST00000261937.6:c.3427G>A	p.Ala1143Thr	p.A1143T	ENST00000261937	NM_182925.4	1143	Gcc/Acc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156841488	156841488	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1023556915		P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1284	39	908	1	ENST00000524377.1:c.791C>T	p.Thr264Met	p.T264M	ENST00000524377	NM_002529.3	264	aCg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438262	49438262	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	448	677	0	ENST00000301067.7:c.5007del	p.Val1670SerfsTer52	p.V1670Sfs*52	ENST00000301067	NM_003482.3	1669	ccC/cc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900080	151900081	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	38	268	0	ENST00000262189.6:c.4030dup	p.Ile1344AsnfsTer11	p.I1344Nfs*11	ENST00000262189	NM_170606.2	1344	ata/aAta																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248450	212248450	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1480034665		P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	98	357	1	ENST00000342788.4:c.3817C>T	p.Arg1273Trp	p.R1273W	ENST00000342788	NM_005235.2	1273	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259751	16259751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	171	509	3	ENST00000375759.3:c.7016G>A	p.Arg2339His	p.R2339H	ENST00000375759	NM_015001.2	2339	cGc/cAc																																																																															
BCL6	604	MSKCC	GRCh37	3	187446988	187446988	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139744042		P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	250	835	1	ENST00000232014.4:c.1205G>A	p.Arg402His	p.R402H	ENST00000232014	NM_001130845.1	402	cGc/cAc																																																																															
MET	4233	MSKCC	GRCh37	7	116399449	116399449	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	79	376	1	ENST00000397752.3:c.2269G>T	p.Gly757Trp	p.G757W	ENST00000397752	NM_000245.2	757	Ggg/Tgg																																																																															
SDHB	6390	MSKCC	GRCh37	1	17349147	17349150	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-	rs794728950		P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	171	661	1	ENST00000375499.3:c.718_721del	p.Leu240ThrfsTer7	p.L240Tfs*7	ENST00000375499	NM_003000.2	240	CTATac/ac																																																																															
SESN2	83667	MSKCC	GRCh37	1	28600589	28600589	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	212	702	0	ENST00000253063.3:c.940T>C	p.Cys314Arg	p.C314R	ENST00000253063	NM_031459.4	314	Tgc/Cgc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	472143	472143	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752787643		P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	116	443	1	ENST00000399788.2:c.658C>T	p.Arg220Cys	p.R220C	ENST00000399788	NM_001042603.1	220	Cgt/Tgt																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145030	58145030	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	215	656	0	ENST00000257904.6:c.314A>G	p.Asp105Gly	p.D105G	ENST00000257904	NM_000075.3	105	gAc/gGc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435106	110435106	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	290	664	0	ENST00000375856.3:c.3295G>T	p.Ala1099Ser	p.A1099S	ENST00000375856	NM_003749.2	1099	Gcc/Tcc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89849473	89849473	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	210	698	0	ENST00000389301.3:c.1508A>G	p.Tyr503Cys	p.Y503C	ENST00000389301	NM_000135.2	503	tAc/tGc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909728	50909728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1213	298	967	0	ENST00000440232.2:c.1448G>A	p.Gly483Asp	p.G483D	ENST00000440232	NM_002691.3	483	gGc/gAc																																																																															
TEK	7010	MSKCC	GRCh37	9	27183547	27183547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	91	420	0	ENST00000380036.4:c.1121G>A	p.Gly374Asp	p.G374D	ENST00000380036	NM_000459.3	374	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578509	7578509	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519978		P-0040266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1184	202	962	3	ENST00000269305.4:c.421T>C	p.Cys141Arg	p.C141R	ENST00000269305	NM_001126112.2	141	Tgc/Cgc																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	GT			P-0040266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	63	283	5	ENST00000257430.4:c.4199delinsGT	p.Ser1400CysfsTer9	p.S1400Cfs*9	ENST00000257430	NM_000038.5	1400	tCg/tGTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0040298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	59	278	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184137	56184137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	84	362	0	ENST00000399503.3:c.4342C>T	p.Pro1448Ser	p.P1448S	ENST00000399503	NM_005921.1	1448	Cca/Tca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922319	178922319	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	54	396	0	ENST00000263967.3:c.1088G>C	p.Gly363Ala	p.G363A	ENST00000263967	NM_006218.2	363	gGa/gCa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56170876	56170877	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	73	264	0	ENST00000399503.3:c.1705dup	p.Val569GlyfsTer7	p.V569Gfs*7	ENST00000399503	NM_005921.1	568	-/G																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	39	309	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CBFB	865	MSKCC	GRCh37	16	67063359	67063359	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	39	306	0	ENST00000412916.2:c.54del	p.Phe18LeufsTer4	p.F18Lfs*4	ENST00000412916		17	Ttt/tt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111444	8111445	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGAG			P-0040314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	41	489	0	ENST00000346208.3:c.933_937dup	p.Ala313GlyfsTer44	p.A313Gfs*44	ENST00000346208		310	-/AGGAG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916932	178916940	+	inframe_deletion	In_Frame_Del	DEL	AACCGTGAA	AACCGTGAA	-			P-0040314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	34	365	0	ENST00000263967.3:c.319_327del	p.Asn107_Glu109del	p.N107_E109del	ENST00000263967	NM_006218.2	107	AACCGTGAA/-																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0040361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	44	243	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0040361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	24	125	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	13	182	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0040361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	10	116	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0040361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	78	340	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139413118	139413118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	71	412	0	ENST00000277541.6:c.1024G>A	p.Ala342Thr	p.A342T	ENST00000277541	NM_017617.3	342	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0040368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	30	183	1	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0040368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	66	189	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs587780070		P-0040368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	203	416	0	ENST00000269305.4:c.535C>G	p.His179Asp	p.H179D	ENST00000269305	NM_001126112.2	179	Cat/Gat																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185198179	185198179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	182	335	0	ENST00000265026.3:c.2661C>A	p.Asp887Glu	p.D887E	ENST00000265026	NM_004721.4	887	gaC/gaA																																																																															
TERT	7015	MSKCC	GRCh37	5	1264586	1264586	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs547377569		P-0040450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	325	671	0	ENST00000310581.5:c.2776G>A	p.Gly926Ser	p.G926S	ENST00000310581	NM_198253.2	926	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0040450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	206	615	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874247	155874247	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs672601335		P-0040450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	92	507	0	ENST00000368323.3:c.284G>C	p.Gly95Ala	p.G95A	ENST00000368323	NM_006912.5	95	gGg/gCg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175958616	175958616	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0040450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	55	262	0	ENST00000367669.3:c.1730-1G>C		p.X577_splice	ENST00000367669	NM_022457.5	577																																																																																
BCL6	604	MSKCC	GRCh37	3	187444578	187444578	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147650939		P-0040450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	341	687	1	ENST00000232014.4:c.1649G>A	p.Arg550His	p.R550H	ENST00000232014	NM_001130845.1	550	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175326	112175339	+	frameshift_variant	Frame_Shift_Del	DEL	ATCAGCCAGGCACA	ATCAGCCAGGCACA	TTC			P-0040450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	69	226	2	ENST00000257430.4:c.4035_4048delinsTTC	p.Glu1345AspfsTer5	p.E1345Dfs*5	ENST00000257430	NM_000038.5	1345	gaATCAGCCAGGCACAaa/gaTTCaa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231203	98231203	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	97	699	0	ENST00000331920.6:c.2080C>A	p.Gln694Lys	p.Q694K	ENST00000331920	NM_000264.3	694	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	225	643	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157505570	157505570	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs886039699		P-0040453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	45	238	0	ENST00000346085.5:c.3550+1G>A		p.X1184_splice	ENST00000346085	NM_020732.3	1184																																																																																
BRD4	23476	MSKCC	GRCh37	19	15367944	15367944	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1568	196	829	0	ENST00000263377.2:c.1382C>A	p.Pro461His	p.P461H	ENST00000263377	NM_058243.2	461	cCt/cAt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	144	670	4	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366939	15366939	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	173	697	6	ENST00000263377.2:c.1687del	p.Ser563AlafsTer21	p.S563Afs*21	ENST00000263377	NM_058243.2	563	Agc/gc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	73	371	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	49	371	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	204	787	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
APC	324	MSKCC	GRCh37	5	112174758	112174761	+	frameshift_variant	Frame_Shift_Del	DEL	AAGA	AAGA	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	39	275	0	ENST00000257430.4:c.3467_3470del	p.Glu1156GlyfsTer8	p.E1156Gfs*8	ENST00000257430	NM_000038.5	1156	gAAGAg/gg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435300	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-	rs765493638		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	65	307	3	ENST00000375856.3:c.3099_3101del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1033	ccACCg/ccg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444275	50444275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	80	355	0	ENST00000331340.3:c.205C>T	p.Arg69Cys	p.R69C	ENST00000331340	NM_006060.4	69	Cgt/Tgt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9776037	9776037	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	158	801	0	ENST00000377346.4:c.505del	p.Leu169CysfsTer48	p.L169Cfs*48	ENST00000377346	NM_005026.3	167	ttC/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	88	376	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216737	7216742	+	inframe_deletion	In_Frame_Del	DEL	GGCTGT	GGCTGT	-	rs779726141		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	105	536	0	ENST00000380728.2:c.681_686del	p.Gln228_Pro229del	p.Q228_P229del	ENST00000380728		227	ccACAGCCc/ccc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905151	50905151	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137953986		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	224	991	3	ENST00000440232.2:c.433G>A	p.Ala145Thr	p.A145T	ENST00000440232	NM_002691.3	145	Gct/Act																																																																															
MALT1	10892	MSKCC	GRCh37	18	56411684	56411684	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1004957123		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	66	420	0	ENST00000348428.3:c.1868C>T	p.Pro623Leu	p.P623L	ENST00000348428	NM_006785.3	623	cCg/cTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	249	508	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
CASP8	841	MSKCC	GRCh37	2	202149799	202149799	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	118	631	0	ENST00000358485.4:c.1245del	p.Phe415LeufsTer26	p.F415Lfs*26	ENST00000358485	NM_001080125.1	414	Ttt/tt																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	108	466	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348566	89348568	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-	rs753054998		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	210	931	0	ENST00000301030.4:c.4382_4384del	p.Lys1461del	p.K1461del	ENST00000301030	NM_001256183.1	1461	aAGAga/aga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	21	74	1	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	64	398	0	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101117	27101117	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	153	787	1	ENST00000324856.7:c.4403del	p.Pro1468LeufsTer13	p.P1468Lfs*13	ENST00000324856	NM_006015.4	1467	Ccc/cc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149514571	149514571	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs540587683		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	78	386	0	ENST00000261799.4:c.373G>A	p.Val125Met	p.V125M	ENST00000261799	NM_002609.3	125	Gtg/Atg																																																																															
NBN	4683	MSKCC	GRCh37	8	90967511	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	55	293	1	ENST00000265433.3:c.1396dup	p.Arg466LysfsTer5	p.R466Kfs*5	ENST00000265433	NM_002485.4	466	agg/aAgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11107001	11107001	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1050237		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	182	704	0	ENST00000344626.4:c.1706G>A	p.Arg569Gln	p.R569Q	ENST00000344626	NM_003072.3	569	cGg/cAg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63759977	63759977	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	42	338	1	ENST00000279873.7:c.635del	p.Gly212AlafsTer24	p.G212Afs*24	ENST00000279873	NM_032199.2	210	ctG/ct																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	256	638	8	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039405	47039405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	174	691	1	ENST00000329236.7:c.797G>A	p.Arg266His	p.R266H	ENST00000329236	NM_001204466.1	266	cGc/cAc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs774532876		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	227	1030	5	ENST00000294008.3:c.1406del	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118361992	118361992	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782281385		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	62	373	1	ENST00000534358.1:c.4778G>A	p.Arg1593His	p.R1593H	ENST00000534358	NM_005933.3	1593	cGc/cAc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16005023	16005023	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775391836		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	212	698	0	ENST00000268712.3:c.2231G>A	p.Arg744Gln	p.R744Q	ENST00000268712	NM_006311.3	744	cGa/cAa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865628	57865628	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	207	1025	0	ENST00000228682.2:c.3109del	p.Leu1037TrpfsTer23	p.L1037Wfs*23	ENST00000228682	NM_005269.2	1035	aaC/aa																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626102	12626102	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs865905076		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	237	486	0	ENST00000251849.4:c.1858G>A	p.Ala620Thr	p.A620T	ENST00000251849	NM_002880.3	620	Gct/Act																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212576881	212576881	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	67	437	0	ENST00000342788.4:c.1018G>T	p.Gly340Ter	p.G340*	ENST00000342788	NM_005235.2	340	Gga/Tga																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937719	36937719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	172	883	0	ENST00000361632.4:c.1019C>T	p.Thr340Ile	p.T340I	ENST00000361632		340	aCa/aTa																																																																															
ATM	472	MSKCC	GRCh37	11	108159797	108159797	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	31	226	0	ENST00000278616.4:c.4207del	p.Ser1403AlafsTer3	p.S1403Afs*3	ENST00000278616	NM_000051.3	1401	ttA/tt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109887	115109887	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762342872		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	198	827	1	ENST00000257566.3:c.1991C>T	p.Ala664Val	p.A664V	ENST00000257566	NM_016569.3	664	gCg/gTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913926	32913927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	67	586	0	ENST00000380152.3:c.5436dup	p.Leu1813ThrfsTer4	p.L1813Tfs*4	ENST00000380152		1812	gaa/gAaa																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871633	35871634	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	97	321	0	ENST00000216797.5:c.872_873del	p.Thr291ArgfsTer15	p.T291Rfs*15	ENST00000216797	NM_020529.2	291	aCA/a																																																																															
MGA	23269	MSKCC	GRCh37	15	42040999	42041001	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	191	672	0	ENST00000219905.7:c.5379_5381del	p.Arg1793del	p.R1793del	ENST00000219905	NM_001164273.1	1793	AGG/-																																																																															
MGA	23269	MSKCC	GRCh37	15	42058313	42058313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	66	325	0	ENST00000219905.7:c.8033G>A	p.Ser2678Asn	p.S2678N	ENST00000219905	NM_001164273.1	2678	aGc/aAc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30129039	30129039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	169	830	0	ENST00000263025.4:c.727C>T	p.Pro243Ser	p.P243S	ENST00000263025	NM_002746.2	243	Ccc/Tcc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30129720	30129720	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1173483036		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	230	649	1	ENST00000263025.4:c.493C>T	p.Arg165Ter	p.R165*	ENST00000263025	NM_002746.2	165	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603033	48603033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	98	326	0	ENST00000342988.3:c.1334G>A	p.Arg445Gln	p.R445Q	ENST00000342988	NM_005359.5	445	cGa/cAa																																																																															
CASP8	841	MSKCC	GRCh37	2	202139674	202139674	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	76	287	0	ENST00000358485.4:c.835C>T	p.Gln279Ter	p.Q279*	ENST00000358485	NM_001080125.1	279	Cag/Tag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248736	212248737	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	62	371	0	ENST00000342788.4:c.3530dup	p.Asn1177LysfsTer9	p.N1177Kfs*9	ENST00000342788	NM_005235.2	1177	aat/aaAt																																																																															
EP300	2033	MSKCC	GRCh37	22	41489031	41489031	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	173	548	0	ENST00000263253.7:c.23C>A	p.Pro8Gln	p.P8Q	ENST00000263253	NM_001429.3	8	cCg/cAg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37050344	37050344	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	150	465	0	ENST00000231790.2:c.493del	p.Ala165LeufsTer2	p.A165Lfs*2	ENST00000231790	NM_000249.3	165	Gct/ct																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630426	187630426	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	213	708	0	ENST00000441802.2:c.556T>A	p.Tyr186Asn	p.Y186N	ENST00000441802	NM_005245.3	186	Tac/Aac																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26021069	26021069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	30	422	0	ENST00000357647.3:c.352G>A	p.Val118Ile	p.V118I	ENST00000357647	NM_003529.2	118	Gtc/Atc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324568	31324568	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	90	499	0	ENST00000412585.2:c.240del	p.Pro81ArgfsTer70	p.P81Rfs*70	ENST00000412585	NM_005514.6	80	ggG/gg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151842262	151842262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	87	367	1	ENST00000262189.6:c.14150C>T	p.Ala4717Val	p.A4717V	ENST00000262189	NM_170606.2	4717	gCc/gTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389318	8389319	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	125	568	0	ENST00000356435.5:c.4299dup	p.Glu1434ArgfsTer33	p.E1434Rfs*33	ENST00000356435		1433	-/C																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324591	31324591	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	131	510	1	ENST00000412585.2:c.217del	p.Ala73ArgfsTer4	p.A73Rfs*4	ENST00000412585	NM_005514.6	73	Gcg/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	196	724	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112174658	112174658	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	83	367	0	ENST00000257430.4:c.3367C>T	p.Gln1123Ter	p.Q1123*	ENST00000257430	NM_000038.5	1123	Caa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29687445	29687602	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCAGATGGGGATTTACTTAAAAAAAAGGAACTAAAATAATTTCCTATTTTCCATTACAGCAAACACAAATTCCAGACTATGCTGAGCTTATTGTTAAGTTTCTTGATGCCTTGATTGACACGTACCTGCCTGGAATTGATGAAGAAACCAGTGAAGA	TTCAGATGGGGATTTACTTAAAAAAAAGGAACTAAAATAATTTCCTATTTTCCATTACAGCAAACACAAATTCCAGACTATGCTGAGCTTATTGTTAAGTTTCTTGATGCCTTGATTGACACGTACCTGCCTGGAATTGATGAAGAAACCAGTGAAGA	-			P-0040490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	15	178	0	ENST00000358273.4:c.8161-60_8258del		p.X2721_splice	ENST00000358273	NM_001042492.2	2721																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48593487	48593487	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	94	316	0	ENST00000342988.3:c.1238A>T	p.Tyr413Phe	p.Y413F	ENST00000342988	NM_005359.5	413	tAc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0040541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	334	375	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0040541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	17	148	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
APC	324	MSKCC	GRCh37	5	112174833	112174833	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0040541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	90	174	1	ENST00000257430.4:c.3542T>A	p.Leu1181Ter	p.L1181*	ENST00000257430	NM_000038.5	1181	tTa/tAa																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39322556	39322556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761415462		P-0040541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	112	312	0	ENST00000373001.3:c.436G>A	p.Ala146Thr	p.A146T	ENST00000373001	NM_022157.3	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	188	626	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0040630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	134	306	0	ENST00000257430.4:c.4192_4193del	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729399	41729399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	106	615	0	ENST00000242208.4:c.1130G>A	p.Arg377His	p.R377H	ENST00000242208	NM_002192.2	377	cGc/cAc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4101266	4101266	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057517898		P-0040630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	146	695	0	ENST00000262948.5:c.541T>A	p.Leu181Met	p.L181M	ENST00000262948	NM_030662.3	181	Ttg/Atg																																																																															
ATM	472	MSKCC	GRCh37	11	108203626	108203626	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0040724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	29	168	0	ENST00000278616.4:c.7926A>T	p.Arg2642Ser	p.R2642S	ENST00000278616	NM_000051.3	2642	agA/agT																																																																															
ATM	472	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781894		P-0040724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	179	415	0	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	105	311	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575083	48575083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	91	261	0	ENST00000342988.3:c.277G>A	p.Val93Met	p.V93M	ENST00000342988	NM_005359.5	93	Gtg/Atg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480361	89480361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	95	257	1	ENST00000336596.2:c.2198G>T	p.Gly733Val	p.G733V	ENST00000336596	NM_005233.5	733	gGc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112175672	112175672	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	87	275	0	ENST00000257430.4:c.4381G>T	p.Glu1461Ter	p.E1461*	ENST00000257430	NM_000038.5	1461	Gaa/Taa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527809	157527809	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374035954		P-0040724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	111	344	0	ENST00000346085.5:c.5534G>A	p.Arg1845His	p.R1845H	ENST00000346085	NM_020732.3	1845	cGc/cAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140494163	140494163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	223	595	0	ENST00000288602.6:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000288602	NM_004333.4	362	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	11	387	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0040802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	1079	510	2	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0040802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	370	835	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
ALK	238	MSKCC	GRCh37	2	29445412	29445412	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748493584		P-0040802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	325	892	2	ENST00000389048.3:c.3421G>A	p.Asp1141Asn	p.D1141N	ENST00000389048	NM_004304.4	1141	Gac/Aac																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027638	48027638	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	83	343	0	ENST00000234420.5:c.2516A>G	p.Asp839Gly	p.D839G	ENST00000234420	NM_000179.2	839	gAc/gGc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660414	227660414	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	33	589	1	ENST00000305123.5:c.3041A>G	p.Asp1014Gly	p.D1014G	ENST00000305123	NM_005544.2	1014	gAc/gGc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	150	669	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	23	643	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303199	15303199	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769955930		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	86	820	2	ENST00000263388.2:c.329G>A	p.Arg110His	p.R110H	ENST00000263388	NM_000435.2	110	cGt/cAt																																																																															
KIT	3815	MSKCC	GRCh37	4	55564642	55564642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	48	560	1	ENST00000288135.5:c.530G>A	p.Arg177His	p.R177H	ENST00000288135	NM_000222.2	177	cGc/cAc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1181132297		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	40	327	0	ENST00000342505.4:c.1016del	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	20	594	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563107	21563107	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs542237961		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	61	716	0	ENST00000382592.4:c.812G>A	p.Arg271His	p.R271H	ENST00000382592	NM_014572.2	271	cGc/cAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972504	32972504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	64	603	1	ENST00000380152.3:c.9854C>T	p.Pro3285Leu	p.P3285L	ENST00000380152		3285	cCc/cTc																																																																															
RB1	5925	MSKCC	GRCh37	13	48953730	48953730	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs3092891		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	17	181	0	ENST00000267163.4:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000267163	NM_000321.2	445	Cga/Tga																																																																															
ERG	2078	MSKCC	GRCh37	21	39755666	39755666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	57	637	0	ENST00000288319.7:c.1099C>T	p.Arg367Cys	p.R367C	ENST00000288319	NM_182918.3	367	Cgc/Tgc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420308	88420308	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367985043		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	50	482	1	ENST00000360948.2:c.2378G>A	p.Arg793Gln	p.R793Q	ENST00000360948	NM_001012338.2	793	cGa/cAa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176665274	176665274	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121908070		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	37	330	0	ENST00000439151.2:c.3958C>T	p.Arg1320Ter	p.R1320*	ENST00000439151	NM_022455.4	1320	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	85	500	5	ENST00000268489.5:c.5677_5678del	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782596		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	44	656	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448564	89448564	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1184230536		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	81	500	0	ENST00000336596.2:c.1528C>T	p.Arg510Ter	p.R510*	ENST00000336596	NM_005233.5	510	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880887	134880887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	50	445	0	ENST00000398015.3:c.1450G>A	p.Ala484Thr	p.A484T	ENST00000398015	NM_004441.4	484	Gcc/Acc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416800	121416800	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770695671		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	126	883	1	ENST00000257555.6:c.229G>A	p.Asp77Asn	p.D77N	ENST00000257555		77	Gat/Aat																																																																															
POLE	5426	MSKCC	GRCh37	12	133248860	133248860	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116260568		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	91	662	0	ENST00000320574.5:c.1735C>T	p.Arg579Cys	p.R579C	ENST00000320574	NM_006231.2	579	Cgc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42052629	42052629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	67	471	2	ENST00000219905.7:c.7300C>T	p.Arg2434Trp	p.R2434W	ENST00000219905	NM_001164273.1	2434	Cgg/Tgg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740623	58740624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs763475304		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	34	554	0	ENST00000305921.3:c.1535dup	p.Asn512LysfsTer16	p.N512Kfs*16	ENST00000305921	NM_003620.3	510	caa/cAaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692901	89692901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786204929		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	12	468	1	ENST00000371953.3:c.385G>A	p.Gly129Arg	p.G129R	ENST00000371953	NM_000314.4	129	Gga/Aga																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434164	121434164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	85	734	0	ENST00000257555.6:c.1055C>T	p.Ser352Phe	p.S352F	ENST00000257555		352	tCc/tTc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101908877	101908877	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1469620887		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	36	485	0	ENST00000374994.4:c.1241G>A	p.Arg414Gln	p.R414Q	ENST00000374994	NM_004612.2	414	cGa/cAa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391890	139391890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	80	819	3	ENST00000277541.6:c.6301G>A	p.Ala2101Thr	p.A2101T	ENST00000277541	NM_017617.3	2101	Gca/Aca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222760	5222760	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199829286		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	86	450	0	ENST00000357368.4:c.3043C>T	p.Arg1015Cys	p.R1015C	ENST00000357368	NM_002850.3	1015	Cgc/Tgc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134687	41134687	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760747458		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	29	400	0	ENST00000379561.5:c.941G>A	p.Arg314His	p.R314H	ENST00000379561	NM_002015.3	314	cGc/cAc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971367	13971367	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755892534		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	73	401	1	ENST00000405192.2:c.562C>T	p.Arg188Cys	p.R188C	ENST00000405192	NM_001163147.1	188	Cgc/Tgc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8338945	8338945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	29	405	0	ENST00000356435.5:c.5356G>A	p.Glu1786Lys	p.E1786K	ENST00000356435		1786	Gaa/Aaa																																																																															
ATR	545	MSKCC	GRCh37	3	142168368	142168368	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1034620994		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	32	399	1	ENST00000350721.4:c.7838C>T	p.Pro2613Leu	p.P2613L	ENST00000350721	NM_001184.3	2613	cCg/cTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238951	5238951	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1237159914		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	61	394	0	ENST00000357368.4:c.1828C>T	p.Arg610Trp	p.R610W	ENST00000357368	NM_002850.3	610	Cgg/Tgg																																																																															
SRC	6714	MSKCC	GRCh37	20	36012617	36012617	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367543238		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	41	347	0	ENST00000358208.4:c.61G>A	p.Ala21Thr	p.A21T	ENST00000358208		21	Gcc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101375	27101375	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	60	487	2	ENST00000324856.7:c.4661del	p.Pro1554HisfsTer11	p.P1554Hfs*11	ENST00000324856	NM_006015.4	1553	Ccc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25368433	25368434	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	25	285	1	ENST00000256078.4:c.511dup	p.Ile171AsnfsTer14	p.I171Nfs*14	ENST00000256078	NM_033360.2	171	atc/aAtc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178554	32178554	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759200326		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	64	590	3	ENST00000375023.3:c.2840C>T	p.Ala947Val	p.A947V	ENST00000375023	NM_004557.3	947	gCc/gTc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942055	17942055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	82	688	0	ENST00000458235.1:c.2960G>A	p.Gly987Asp	p.G987D	ENST00000458235	NM_000215.3	987	gGc/gAc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265049	46265049	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	39	480	0	ENST00000371998.3:c.1924del	p.Leu642Ter	p.L642*	ENST00000371998		640	tCc/tc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892293	9892293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs796052550		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	42	371	0	ENST00000330684.3:c.2197G>A	p.Ala733Thr	p.A733T	ENST00000330684	NM_001134407.1	733	Gca/Aca																																																																															
CUL3	8452	MSKCC	GRCh37	2	225379486	225379486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	23	390	0	ENST00000264414.4:c.382C>T	p.Arg128Cys	p.R128C	ENST00000264414	NM_003590.4	128	Cgt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830135	72830135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	75	556	1	ENST00000268489.5:c.6446G>A	p.Arg2149His	p.R2149H	ENST00000268489	NM_006885.3	2149	cGc/cAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176687001	176687001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	41	399	0	ENST00000439151.2:c.4978C>T	p.Arg1660Cys	p.R1660C	ENST00000439151	NM_022455.4	1660	Cgc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828024	72828024	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200701402		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	98	744	1	ENST00000268489.5:c.8557G>A	p.Ala2853Thr	p.A2853T	ENST00000268489	NM_006885.3	2853	Gca/Aca																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562629	95562629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	48	360	0	ENST00000343455.3:c.4628C>T	p.Ser1543Phe	p.S1543F	ENST00000343455	NM_177438.2	1543	tCc/tTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396886	139396886	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752754662		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	59	524	0	ENST00000277541.6:c.5222C>T	p.Ala1741Val	p.A1741V	ENST00000277541	NM_017617.3	1741	gCg/gTg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	83	876	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885286	111885286	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770836648		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	69	612	2	ENST00000341259.2:c.1174C>T	p.Arg392Trp	p.R392W	ENST00000341259	NM_005475.2	392	Cgg/Tgg																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612801	228612801	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369460992		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	65	642	1	ENST00000366696.1:c.226G>A	p.Ala76Thr	p.A76T	ENST00000366696	NM_003493.2	76	Gct/Act																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30105512	30105512	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768104173		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	79	585	0	ENST00000331968.5:c.1174G>A	p.Ala392Thr	p.A392T	ENST00000331968	NM_002742.2	392	Gcc/Acc																																																																															
TERT	7015	MSKCC	GRCh37	5	1279530	1279530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	68	833	0	ENST00000310581.5:c.2006G>A	p.Arg669Gln	p.R669Q	ENST00000310581	NM_198253.2	669	cGg/cAg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123247617	123247617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	41	364	0	ENST00000358487.5:c.1874G>A	p.Arg625Gln	p.R625Q	ENST00000358487	NM_000141.4	625	cGa/cAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125832	47125832	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	22	230	2	ENST00000409792.3:c.5438del	p.Asn1813IlefsTer25	p.N1813Ifs*25	ENST00000409792	NM_014159.6	1813	aAt/at																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11958212	11958212	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760186886		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	44	301	0	ENST00000353533.5:c.122G>A	p.Arg41His	p.R41H	ENST00000353533	NM_003010.3	41	cGc/cAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190747	11190747	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759603938		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	84	691	2	ENST00000361445.4:c.5452C>T	p.Arg1818Cys	p.R1818C	ENST00000361445	NM_004958.3	1818	Cgt/Tgt																																																																															
IRF4	3662	MSKCC	GRCh37	6	395001	395001	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1300046652		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	43	402	3	ENST00000380956.4:c.402del	p.Gly135GlufsTer14	p.G135Efs*14	ENST00000380956	NM_001195286.1	133	Aaa/aa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67670706	67670706	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762060506		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	70	543	1	ENST00000264010.4:c.1951C>T	p.Arg651Trp	p.R651W	ENST00000264010	NM_006565.3	651	Cgg/Tgg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434967	110434967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	80	604	0	ENST00000375856.3:c.3434G>A	p.Arg1145His	p.R1145H	ENST00000375856	NM_003749.2	1145	cGc/cAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374486	118374486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	26	391	0	ENST00000534358.1:c.7879C>T	p.Arg2627Cys	p.R2627C	ENST00000534358	NM_005933.3	2627	Cgt/Tgt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18800901	18800901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767127006		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	30	390	0	ENST00000266497.5:c.4277G>A	p.Arg1426Gln	p.R1426Q	ENST00000266497		1426	cGa/cAa																																																																															
SYK	6850	MSKCC	GRCh37	9	93606314	93606314	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs16906862		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	78	702	1	ENST00000375746.1:c.134G>A	p.Arg45His	p.R45H	ENST00000375746	NM_001174167.1	45	cGc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16245932	16245932	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760738868		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	35	296	0	ENST00000375759.3:c.1555G>A	p.Val519Met	p.V519M	ENST00000375759	NM_015001.2	519	Gtg/Atg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523142	176523142	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778323767		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	69	695	1	ENST00000292408.4:c.1906G>A	p.Gly636Ser	p.G636S	ENST00000292408	NM_213647.1	636	Ggc/Agc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216702	36216702	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748120825		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	55	553	0	ENST00000222270.7:c.3868C>T	p.Arg1290Cys	p.R1290C	ENST00000222270	NM_014727.1	1290	Cgc/Tgc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942514	17942514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1490602805		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	68	681	1	ENST00000458235.1:c.2774G>A	p.Arg925His	p.R925H	ENST00000458235	NM_000215.3	925	cGc/cAc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45795060	45795060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374655042		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	73	543	0	ENST00000372115.3:c.1526G>A	p.Arg509His	p.R509H	ENST00000372115	NM_001048171.1	509	cGc/cAc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78867626	78867626	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781190662		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	65	711	0	ENST00000306801.3:c.2362C>T	p.Arg788Cys	p.R788C	ENST00000306801	NM_020761.2	788	Cgc/Tgc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410000	139410000	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369522885		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	102	756	1	ENST00000277541.6:c.1838G>A	p.Arg613His	p.R613H	ENST00000277541	NM_017617.3	613	cGc/cAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008056	29008056	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755339233		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	24	353	1	ENST00000282397.4:c.713G>A	p.Arg238His	p.R238H	ENST00000282397	NM_002019.4	238	cGc/cAc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934985	49934985	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768318968		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	62	697	0	ENST00000296474.3:c.2014G>A	p.Gly672Ser	p.G672S	ENST00000296474	NM_002447.2	672	Ggc/Agc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900336	3900336	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148781922		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	66	654	0	ENST00000262367.5:c.760G>A	p.Ala254Thr	p.A254T	ENST00000262367	NM_004380.2	254	Gcg/Acg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39262616	39262616	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779162761		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	37	424	0	ENST00000402219.2:c.890C>T	p.Ser297Leu	p.S297L	ENST00000402219	NM_005633.3	297	tCg/tTg																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735359	204735359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	25	306	0	ENST00000302823.3:c.160G>A	p.Ala54Thr	p.A54T	ENST00000302823	NM_005214.4	54	Gcc/Acc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053171	180053171	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369939230		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	60	818	2	ENST00000261937.6:c.1198G>A	p.Ala400Thr	p.A400T	ENST00000261937	NM_182925.4	400	Gcc/Acc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845504	151845504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	44	545	1	ENST00000262189.6:c.13508G>A	p.Cys4503Tyr	p.C4503Y	ENST00000262189	NM_170606.2	4503	tGc/tAc																																																																															
RB1	5925	MSKCC	GRCh37	13	48951105	48951105	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	23	291	0	ENST00000267163.4:c.1267G>T	p.Gly423Ter	p.G423*	ENST00000267163	NM_000321.2	423	Gga/Tga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63545705	63545705	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751143605		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	74	445	1	ENST00000307078.5:c.889G>A	p.Ala297Thr	p.A297T	ENST00000307078	NM_004655.3	297	Gcc/Acc																																																																															
ARAF	369	MSKCC	GRCh37	X	47430341	47430341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	30	363	0	ENST00000377045.4:c.1616C>T	p.Pro539Leu	p.P539L	ENST00000377045	NM_001654.4	539	cCc/cTc																																																																															
MGA	23269	MSKCC	GRCh37	15	42032353	42032353	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779785984		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	52	518	0	ENST00000219905.7:c.4537C>T	p.Arg1513Cys	p.R1513C	ENST00000219905	NM_001164273.1	1513	Cgc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993624	72993624	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs997674247		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	71	639	1	ENST00000268489.5:c.421G>A	p.Ala141Thr	p.A141T	ENST00000268489	NM_006885.3	141	Gcg/Acg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65321323	65321323	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201595595		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	63	622	0	ENST00000342505.4:c.1517G>A	p.Arg506His	p.R506H	ENST00000342505	NM_002227.2	506	cGc/cAc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518224	103518224	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376753356		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	38	266	1	ENST00000355739.4:c.2162C>T	p.Ala721Val	p.A721V	ENST00000355739	NM_000123.3	721	gCg/gTg																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858177	27858177	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1199392510		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	37	422	0	ENST00000359303.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000359303	NM_003535.2	132	Cgt/Tgt																																																																															
RARA	5914	MSKCC	GRCh37	17	38487543	38487543	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371882393		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	48	594	0	ENST00000254066.5:c.73G>A	p.Ala25Thr	p.A25T	ENST00000254066	NM_000964.3	25	Gcc/Acc																																																																															
SMO	6608	MSKCC	GRCh37	7	128851985	128851985	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778688		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	136	732	2	ENST00000249373.3:c.2057C>T	p.Ala686Val	p.A686V	ENST00000249373	NM_005631.4	686	gCg/gTg																																																																															
PIM1	5292	MSKCC	GRCh37	6	37140814	37140814	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1244024334		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	71	514	0	ENST00000373509.5:c.650G>A	p.Arg217His	p.R217H	ENST00000373509	NM_002648.3	217	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984739	72984739	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113497421		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	78	707	0	ENST00000268489.5:c.2845G>A	p.Val949Ile	p.V949I	ENST00000268489	NM_006885.3	949	Gtc/Atc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11168942	11168942	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057523566		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	48	454	0	ENST00000344626.4:c.4436G>A	p.Arg1479His	p.R1479H	ENST00000344626	NM_003072.3	1479	cGt/cAt																																																																															
CD276	80381	MSKCC	GRCh37	15	73996221	73996221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	42	393	0	ENST00000318443.5:c.955G>A	p.Ala319Thr	p.A319T	ENST00000318443	NM_001024736.1	319	Gca/Aca																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11169536	11169536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	83	756	1	ENST00000344626.4:c.4606G>A	p.Ala1536Thr	p.A1536T	ENST00000344626	NM_003072.3	1536	Gca/Aca																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646279	3646279	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749277750		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	82	829	0	ENST00000294008.3:c.1799C>T	p.Pro600Leu	p.P600L	ENST00000294008	NM_032444.2	600	cCg/cTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53243872	53243872	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	22	378	0	ENST00000375401.3:c.1121C>T	p.Ala374Val	p.A374V	ENST00000375401	NM_004187.3	374	gCg/gTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	28	497	0	ENST00000320574.5:c.1231G>A	p.Val411Met	p.V411M	ENST00000320574	NM_006231.2	411	Gtg/Atg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639525	3639525	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369846826		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	108	815	1	ENST00000294008.3:c.4114C>T	p.Arg1372Trp	p.R1372W	ENST00000294008	NM_032444.2	1372	Cgg/Tgg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31016154	31016154	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777619874		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	55	486	0	ENST00000375687.4:c.400G>A	p.Ala134Thr	p.A134T	ENST00000375687	NM_015338.5	134	Gca/Aca																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023402	31023402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	37	511	1	ENST00000375687.4:c.2887C>T	p.Pro963Ser	p.P963S	ENST00000375687	NM_015338.5	963	Cca/Tca																																																																															
ATR	545	MSKCC	GRCh37	3	142172007	142172007	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762196224		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	51	493	0	ENST00000350721.4:c.7724C>T	p.Ala2575Val	p.A2575V	ENST00000350721	NM_001184.3	2575	gCg/gTg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240268	41240268	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1232364332		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	35	243	0	ENST00000379561.5:c.82C>T	p.Pro28Ser	p.P28S	ENST00000379561	NM_002015.3	28	Ccc/Tcc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88672025	88672025	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782231		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	32	480	0	ENST00000372037.3:c.559C>T	p.Arg187Cys	p.R187C	ENST00000372037	NM_004329.2	187	Cgt/Tgt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141542552	141542552	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1382113944		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	114	563	0	ENST00000220592.5:c.2434C>T	p.Arg812Trp	p.R812W	ENST00000220592	NM_012154.3	812	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260917	16260917	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377314260		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	38	440	0	ENST00000375759.3:c.8182G>A	p.Ala2728Thr	p.A2728T	ENST00000375759	NM_015001.2	2728	Gct/Act																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262141	16262141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201304481		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	27	303	0	ENST00000375759.3:c.9406C>T	p.Arg3136Cys	p.R3136C	ENST00000375759	NM_015001.2	3136	Cgt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16265870	16265870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	51	668	0	ENST00000375759.3:c.10943C>T	p.Ala3648Val	p.A3648V	ENST00000375759	NM_015001.2	3648	gCc/gTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100842	27100842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	40	462	0	ENST00000324856.7:c.4124G>A	p.Gly1375Asp	p.G1375D	ENST00000324856	NM_006015.4	1375	gGc/gAc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258771	115258771	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	45	354	0	ENST00000369535.4:c.11A>G	p.Tyr4Cys	p.Y4C	ENST00000369535	NM_002524.4	4	tAc/tGc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163317721	163317721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	28	260	0	ENST00000271452.3:c.1117G>T	p.Val373Leu	p.V373L	ENST00000271452	NM_145697.2	373	Gta/Tta																																																																															
IL10	3586	MSKCC	GRCh37	1	206944710	206944710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	44	442	0	ENST00000423557.1:c.216G>T	p.Glu72Asp	p.E72D	ENST00000423557	NM_000572.2	72	gaG/gaT																																																																															
WT1	7490	MSKCC	GRCh37	11	32450102	32450102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	92	699	2	ENST00000332351.3:c.710C>T	p.Ala237Val	p.A237V	ENST00000332351	NM_024426.4	237	gCg/gTg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64135674	64135674	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199836004		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	85	793	0	ENST00000334205.4:c.1142C>T	p.Ala381Val	p.A381V	ENST00000334205	NM_003942.2	381	gCg/gTg																																																																															
ATM	472	MSKCC	GRCh37	11	108163503	108163503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	23	479	0	ENST00000278616.4:c.4594G>A	p.Val1532Met	p.V1532M	ENST00000278616	NM_000051.3	1532	Gtg/Atg																																																																															
SDHD	6392	MSKCC	GRCh37	11	111958643	111958643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	59	411	0	ENST00000375549.3:c.115C>T	p.Pro39Ser	p.P39S	ENST00000375549	NM_003002.3	39	Cct/Tct																																																																															
CCND2	894	MSKCC	GRCh37	12	4388080	4388080	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1417189054		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	19	285	0	ENST00000261254.3:c.566C>T	p.Ala189Val	p.A189V	ENST00000261254	NM_001759.3	189	gCc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432498	49432498	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763549369		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	83	691	0	ENST00000301067.7:c.8641C>T	p.Arg2881Trp	p.R2881W	ENST00000301067	NM_003482.3	2881	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435457	49435457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748389081		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	90	636	1	ENST00000301067.7:c.6215G>A	p.Arg2072His	p.R2072H	ENST00000301067	NM_003482.3	2072	cGc/cAc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562765	21562765	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1259441480		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	56	267	0	ENST00000382592.4:c.1154G>A	p.Gly385Asp	p.G385D	ENST00000382592	NM_014572.2	385	gGc/gAc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21565503	21565503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	102	659	0	ENST00000382592.4:c.383G>A	p.Ser128Asn	p.S128N	ENST00000382592	NM_014572.2	128	aGc/aAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910701	32910701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	41	490	0	ENST00000380152.3:c.2209G>A	p.Ala737Thr	p.A737T	ENST00000380152		737	Gca/Aca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32921027	32921027	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748816192		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	27	433	0	ENST00000380152.3:c.7001C>T	p.Pro2334Leu	p.P2334L	ENST00000380152		2334	cCc/cTc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32945130	32945130	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80359105		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	21	324	1	ENST00000380152.3:c.8525G>A	p.Arg2842His	p.R2842H	ENST00000380152		2842	cGc/cAc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134441	41134441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	78	552	0	ENST00000379561.5:c.1187G>A	p.Gly396Asp	p.G396D	ENST00000379561	NM_002015.3	396	gGc/gAc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41239783	41239783	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	87	579	1	ENST00000379561.5:c.567G>A	p.Trp189Ter	p.W189*	ENST00000379561	NM_002015.3	189	tgG/tgA																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434964	110434964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	114	614	1	ENST00000375856.3:c.3437G>A	p.Arg1146His	p.R1146H	ENST00000375856	NM_003749.2	1146	cGc/cAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434970	110434970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	80	623	0	ENST00000375856.3:c.3431G>A	p.Arg1144His	p.R1144H	ENST00000375856	NM_003749.2	1144	cGc/cAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434992	110434992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	68	614	0	ENST00000375856.3:c.3409C>T	p.Arg1137Cys	p.R1137C	ENST00000375856	NM_003749.2	1137	Cgc/Tgc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436687	110436687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	173	819	0	ENST00000375856.3:c.1714C>T	p.Arg572Cys	p.R572C	ENST00000375856	NM_003749.2	572	Cgc/Tgc																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68331743	68331743	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	26	237	0	ENST00000487270.1:c.343del	p.Thr115LeufsTer5	p.T115Lfs*5	ENST00000487270	NM_133509.3	113	ggA/gg																																																																															
MGA	23269	MSKCC	GRCh37	15	42054422	42054422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	23	405	0	ENST00000219905.7:c.7606G>T	p.Asp2536Tyr	p.D2536Y	ENST00000219905	NM_001164273.1	2536	Gat/Tat																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347978	347978	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771101523		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	67	849	1	ENST00000262320.3:c.1528G>A	p.Ala510Thr	p.A510T	ENST00000262320	NM_003502.3	510	Gcc/Acc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396718	396718	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	75	616	0	ENST00000262320.3:c.308G>T	p.Arg103Met	p.R103M	ENST00000262320	NM_003502.3	103	aGg/aTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134473	2134473	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1343536158		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	72	820	1	ENST00000219476.3:c.4250G>A	p.Arg1417Gln	p.R1417Q	ENST00000219476	NM_000548.3	1417	cGg/cAg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134493	2134493	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1216613310		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	67	815	0	ENST00000219476.3:c.4270G>A	p.Asp1424Asn	p.D1424N	ENST00000219476	NM_000548.3	1424	Gac/Aac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786794	3786794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	45	389	0	ENST00000262367.5:c.4417G>A	p.Ala1473Thr	p.A1473T	ENST00000262367	NM_004380.2	1473	Gcc/Acc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857586	9857586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	32	421	0	ENST00000330684.3:c.3815C>T	p.Ala1272Val	p.A1272V	ENST00000330684	NM_001134407.1	1272	gCa/gTa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641779	23641779	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746582620		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	15	267	0	ENST00000261584.4:c.1696C>T	p.Arg566Cys	p.R566C	ENST00000261584	NM_024675.3	566	Cgt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72863735	72863735	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	66	524	0	ENST00000268489.5:c.3472G>T	p.Gly1158Ter	p.G1158*	ENST00000268489	NM_006885.3	1158	Gga/Tga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346600	89346600	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749269329		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	41	536	0	ENST00000301030.4:c.6350C>T	p.Pro2117Leu	p.P2117L	ENST00000301030	NM_001256183.1	2117	cCg/cTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348320	89348320	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761378635		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	67	882	1	ENST00000301030.4:c.4630G>A	p.Asp1544Asn	p.D1544N	ENST00000301030	NM_001256183.1	1544	Gac/Aac																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351934	89351934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1269	118	953	0	ENST00000301030.4:c.1016C>T	p.Ala339Val	p.A339V	ENST00000301030	NM_001256183.1	339	gCc/gTc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075175	16075175	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	47	375	0	ENST00000268712.3:c.377T>C	p.Val126Ala	p.V126A	ENST00000268712	NM_006311.3	126	gTt/gCt																																																																															
FLCN	201163	MSKCC	GRCh37	17	17127300	17127300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	78	680	0	ENST00000285071.4:c.554C>T	p.Ser185Phe	p.S185F	ENST00000285071	NM_144997.5	185	tCc/tTc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868246	37868246	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	77	679	0	ENST00000269571.5:c.967A>C	p.Thr323Pro	p.T323P	ENST00000269571		323	Aca/Cca																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883225	37883225	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	60	701	0	ENST00000269571.5:c.3128T>C	p.Val1043Ala	p.V1043A	ENST00000269571		1043	gTc/gCc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78866583	78866583	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	88	658	0	ENST00000306801.3:c.2156C>A	p.Ser719Tyr	p.S719Y	ENST00000306801	NM_020761.2	719	tCt/tAt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78899174	78899174	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199756138		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	68	414	1	ENST00000306801.3:c.2813C>T	p.Ala938Val	p.A938V	ENST00000306801	NM_020761.2	938	gCg/gTg																																																																															
YES1	7525	MSKCC	GRCh37	18	747948	747948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	30	519	0	ENST00000314574.4:c.442G>A	p.Ala148Thr	p.A148T	ENST00000314574	NM_005433.3	148	Gcg/Acg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2199922	2199922	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	73	678	2	ENST00000398665.3:c.691C>T	p.Arg231Ter	p.R231*	ENST00000398665	NM_032482.2	231	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5265039	5265039	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748364975		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	72	640	1	ENST00000357368.4:c.548G>A	p.Arg183His	p.R183H	ENST00000357368	NM_002850.3	183	cGc/cAc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955144	17955144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	65	801	0	ENST00000458235.1:c.83T>C	p.Val28Ala	p.V28A	ENST00000458235	NM_000215.3	28	gTg/gCg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18961631	18961631	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1339234477		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	92	661	1	ENST00000262803.5:c.764G>A	p.Arg255His	p.R255H	ENST00000262803	NM_002911.3	255	cGc/cAc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18963101	18963101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	94	624	0	ENST00000262803.5:c.968C>T	p.Ser323Phe	p.S323F	ENST00000262803	NM_002911.3	323	tCc/tTc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967719	18967719	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1169322559		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	72	671	0	ENST00000262803.5:c.1858G>A	p.Ala620Thr	p.A620T	ENST00000262803	NM_002911.3	620	Gcc/Acc																																																																															
AXL	558	MSKCC	GRCh37	19	41758287	41758287	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	66	648	0	ENST00000301178.4:c.1743T>A	p.Asp581Glu	p.D581E	ENST00000301178	NM_021913.4	581	gaT/gaA																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45858973	45858973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	86	602	1	ENST00000391945.4:c.1493G>A	p.Gly498Asp	p.G498D	ENST00000391945	NM_000400.3	498	gGc/gAc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52723484	52723484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	70	491	0	ENST00000322088.6:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000322088	NM_014225.5	449	Gcc/Acc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39285941	39285941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	39	346	0	ENST00000402219.2:c.218G>A	p.Arg73His	p.R73H	ENST00000402219	NM_005633.3	73	cGt/cAt																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919695	96919695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	48	536	0	ENST00000258439.3:c.568G>A	p.Ala190Thr	p.A190T	ENST00000258439	NM_001193304.2	190	Gcc/Acc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660127	227660127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	61	638	0	ENST00000305123.5:c.3328G>A	p.Ala1110Thr	p.A1110T	ENST00000305123	NM_005544.2	1110	Gcc/Acc																																																																															
SRC	6714	MSKCC	GRCh37	20	36012599	36012599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	30	437	0	ENST00000358208.4:c.43C>T	p.Arg15Cys	p.R15C	ENST00000358208		15	Cgc/Tgc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57480460	57480460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	27	260	0	ENST00000371085.3:c.455C>T	p.Ala152Val	p.A152V	ENST00000371085	NM_000516.4	152	gCt/gTt																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24167595	24167595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	47	451	0	ENST00000263121.7:c.979G>A	p.Ala327Thr	p.A327T	ENST00000263121	NM_003073.3	327	Gcc/Acc																																																																															
RAC2	5880	MSKCC	GRCh37	22	37627415	37627415	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1415916204		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	84	651	3	ENST00000249071.6:c.304C>T	p.Arg102Trp	p.R102W	ENST00000249071	NM_002872.4	102	Cgg/Tgg																																																																															
EP300	2033	MSKCC	GRCh37	22	41547916	41547916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	46	468	1	ENST00000263253.7:c.2897C>T	p.Ala966Val	p.A966V	ENST00000263253	NM_001429.3	966	gCc/gTc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645681	12645681	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397516830		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	32	289	0	ENST00000251849.4:c.788T>C	p.Val263Ala	p.V263A	ENST00000251849	NM_002880.3	263	gTc/gCc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928849	49928849	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	49	831	0	ENST00000296474.3:c.3517A>G	p.Ile1173Val	p.I1173V	ENST00000296474	NM_002447.2	1173	Atc/Gtc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259055	89259055	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	30	286	0	ENST00000336596.2:c.199A>G	p.Thr67Ala	p.T67A	ENST00000336596	NM_005233.5	67	Act/Gct																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119721051	119721051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	88	509	1	ENST00000316626.5:c.124G>A	p.Ala42Thr	p.A42T	ENST00000316626		42	Gca/Aca																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664771	138664771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	18	173	0	ENST00000330315.3:c.794C>T	p.Ala265Val	p.A265V	ENST00000330315	NM_023067.3	265	gCg/gTg																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260145	149260145	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200641813		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	49	444	0	ENST00000360632.3:c.748C>T	p.Arg250Cys	p.R250C	ENST00000360632	NM_015472.4	250	Cgc/Tgc																																																																															
TP63	8626	MSKCC	GRCh37	3	189456529	189456529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752080701		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	34	447	0	ENST00000264731.3:c.290G>A	p.Arg97His	p.R97H	ENST00000264731	NM_003722.4	97	cGc/cAc																																																																															
KIT	3815	MSKCC	GRCh37	4	55592136	55592136	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1458834829		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	38	464	1	ENST00000288135.5:c.1460G>T	p.Gly487Val	p.G487V	ENST00000288135	NM_000222.2	487	gGc/gTc																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84403335	84403335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	26	361	0	ENST00000321945.7:c.150G>A	p.Met50Ile	p.M50I	ENST00000321945	NM_139076.2	50	atG/atA																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143129680	143129680	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G	rs977557624		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	20	311	0	ENST00000262992.4:c.970T>C	p.Ser324Pro	p.S324P	ENST00000262992	NM_001101669.1	324	Tcc/Ccc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510206	187510206	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	43	442	0	ENST00000441802.2:c.13307C>A	p.Pro4436His	p.P4436H	ENST00000441802	NM_005245.3	4436	cCt/cAt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31508765	31508765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	90	656	0	ENST00000344624.3:c.1550G>A	p.Arg517Gln	p.R517Q	ENST00000344624		517	cGa/cAa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31508786	31508786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	99	633	0	ENST00000344624.3:c.1529G>A	p.Arg510His	p.R510H	ENST00000344624		510	cGc/cAc																																																																															
MSH3	4437	MSKCC	GRCh37	5	80171602	80171602	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs576204286		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	33	527	1	ENST00000265081.6:c.3335C>T	p.Thr1112Met	p.T1112M	ENST00000265081	NM_002439.4	1112	aCg/aTg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149506127	149506127	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	51	602	0	ENST00000261799.4:c.1630C>A	p.Leu544Ile	p.L544I	ENST00000261799	NM_002609.3	544	Ctc/Atc																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402753	20402753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	20	207	1	ENST00000346618.3:c.290G>A	p.Ser97Asn	p.S97N	ENST00000346618	NM_001949.4	97	aGc/aAc																																																																															
E2F3	1871	MSKCC	GRCh37	6	20481613	20481613	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	19	263	0	ENST00000346618.3:c.682A>G	p.Ile228Val	p.I228V	ENST00000346618	NM_001949.4	228	Atc/Gtc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797235	32797235	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768383489		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	103	787	1	ENST00000374899.4:c.1874C>T	p.Pro625Leu	p.P625L	ENST00000374899	NM_018833.2	625	cCg/cTg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117687431	117687431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	33	319	0	ENST00000368508.3:c.2620G>A	p.Glu874Lys	p.E874K	ENST00000368508	NM_002944.2	874	Gaa/Aaa																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137524761	137524761	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1258321707		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	39	413	1	ENST00000367739.4:c.608C>T	p.Ala203Val	p.A203V	ENST00000367739	NM_000416.2	203	gCg/gTg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935607	13935607	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751525538		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	36	381	0	ENST00000405192.2:c.1249C>T	p.Arg417Cys	p.R417C	ENST00000405192	NM_001163147.1	417	Cgt/Tgt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508611	106508611	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	54	453	0	ENST00000359195.3:c.605T>C	p.Val202Ala	p.V202A	ENST00000359195	NM_002649.2	202	gTg/gCg																																																																															
MET	4233	MSKCC	GRCh37	7	116415023	116415023	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs575907920		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	36	547	0	ENST00000397752.3:c.3117C>A	p.Asp1039Glu	p.D1039E	ENST00000397752	NM_000245.2	1039	gaC/gaA																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271703	38271703	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1415925468		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	70	802	1	ENST00000425967.3:c.2246G>A	p.Arg749His	p.R749H	ENST00000425967	NM_001174067.1	749	cGc/cAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68942777	68942777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	55	492	1	ENST00000288368.4:c.589G>A	p.Val197Met	p.V197M	ENST00000288368	NM_024870.2	197	Gtg/Atg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054630	5054630	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs772744665		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	27	306	2	ENST00000381652.3:c.682C>T	p.Arg228Ter	p.R228*	ENST00000381652	NM_004972.3	228	Cga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8517889	8517889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	36	290	0	ENST00000356435.5:c.1502G>A	p.Gly501Asp	p.G501D	ENST00000356435		501	gGt/gAt																																																																															
ABL1	25	MSKCC	GRCh37	9	133760508	133760508	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	83	711	0	ENST00000318560.5:c.2831A>G	p.Asp944Gly	p.D944G	ENST00000318560	NM_005157.4	944	gAc/gGc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781250	135781250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	57	568	0	ENST00000298552.3:c.1715G>A	p.Cys572Tyr	p.C572Y	ENST00000298552	NM_001162426.1	572	tGc/tAc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841268	15841269	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	14	133	0	ENST00000307771.7:c.1352_1353delinsAT	p.Arg451His	p.R451H	ENST00000307771	NM_005089.3	451	cGC/cAT																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932841	39932841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	28	368	0	ENST00000378444.4:c.1758C>A	p.Ser586Arg	p.S586R	ENST00000378444	NM_001123385.1	586	agC/agA																																																																															
MED12	9968	MSKCC	GRCh37	X	70349961	70349961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	88	394	0	ENST00000374080.3:c.3944C>T	p.Ala1315Val	p.A1315V	ENST00000374080		1315	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0040920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	52	481	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
MTOR	2475	MSKCC	GRCh37	1	11259663	11259683	+	inframe_deletion	In_Frame_Del	DEL	GTGAGGTGAGGGCCAACTCGA	GTGAGGTGAGGGCCAACTCGA	-			P-0040920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	18	498	1	ENST00000361445.4:c.4022_4042del	p.Ile1341_Gln1348delinsLys	p.I1341_Q1348delinsK	ENST00000361445	NM_004958.3	1341	aTCGAGTTGGCCCTCACCTCACaa/aaa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16021327	16021327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	32	240	0	ENST00000268712.3:c.1930G>T	p.Gly644Cys	p.G644C	ENST00000268712	NM_006311.3	644	Ggt/Tgt																																																																															
RARA	5914	MSKCC	GRCh37	17	38511529	38511529	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	19	546	0	ENST00000254066.5:c.1027G>C	p.Glu343Gln	p.E343Q	ENST00000254066	NM_000964.3	343	Gag/Cag																																																																															
CASP8	841	MSKCC	GRCh37	2	202137406	202137406	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	58	385	0	ENST00000358485.4:c.634G>T	p.Gly212Ter	p.G212*	ENST00000358485	NM_001080125.1	212	Gga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	337	406	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0041091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	44	407	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0041091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	32	579	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
JUN	3725	MSKCC	GRCh37	1	59248633	59248634	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0041091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	179	908	0	ENST00000371222.2:c.109_110del	p.Ser37HisfsTer69	p.S37Hfs*69	ENST00000371222	NM_002228.3	37	AGc/c																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593520	48593520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	71	260	0	ENST00000342988.3:c.1271A>T	p.Asp424Val	p.D424V	ENST00000342988	NM_005359.5	424	gAt/gTt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206650098	206650098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	102	754	0	ENST00000367120.3:c.618C>A	p.Ser206Arg	p.S206R	ENST00000367120	NM_014002.3	206	agC/agA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575155	48575156	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0041091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	94	329	0	ENST00000342988.3:c.350dup	p.Tyr117Ter	p.Y117*	ENST00000342988	NM_005359.5	117	tat/tAat																																																																															
UPF1	5976	MSKCC	GRCh37	19	18975048	18975048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	67	329	0	ENST00000262803.5:c.2845C>T	p.Arg949Trp	p.R949W	ENST00000262803	NM_002911.3	949	Cgg/Tgg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170015128	170015128	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	39	691	0	ENST00000295797.4:c.1535del	p.Gly512AspfsTer18	p.G512Dfs*18	ENST00000295797	NM_002740.5	512	Gga/ga																																																																															
MED12	9968	MSKCC	GRCh37	X	70342101	70342101	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	99	277	0	ENST00000374080.3:c.1153G>T	p.Asp385Tyr	p.D385Y	ENST00000374080		385	Gat/Tat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0041169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	76	403	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0041169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	85	401	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	136	483	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0041169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	104	511	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0041169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	82	393	0	ENST00000257430.4:c.4192_4193del	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468397	89468398	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1467832547		P-0041169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	41	312	0	ENST00000336596.2:c.1938dup	p.Glu647ArgfsTer7	p.E647Rfs*7	ENST00000336596	NM_005233.5	644	tca/tcAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227834	36227834	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	195	951	1	ENST00000222270.7:c.7319A>G	p.Glu2440Gly	p.E2440G	ENST00000222270	NM_014727.1	2440	gAg/gGg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52649459	52649459	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	272	546	0	ENST00000394830.3:c.1832C>A	p.Ala611Glu	p.A611E	ENST00000394830	NM_018313.4	611	gCa/gAa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111506	8111507	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	76	663	1	ENST00000346208.3:c.993dup	p.Ala332CysfsTer20	p.A332Cfs*20	ENST00000346208		331	aat/aaTt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100043	157100043	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1455234951		P-0041170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	11	80	0	ENST00000346085.5:c.980G>C	p.Gly327Ala	p.G327A	ENST00000346085	NM_020732.3	327	gGa/gCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0041222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	83	421	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577507	7577507	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	129	686	0	ENST00000269305.4:c.774A>C	p.Glu258Asp	p.E258D	ENST00000269305	NM_001126112.2	258	gaA/gaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	153	414	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0041252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	306	823	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0041252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	122	311	0	ENST00000257430.4:c.4391_4394del	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																															
FYN	2534	MSKCC	GRCh37	6	112041037	112041037	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761032788		P-0041252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	166	516	0	ENST00000368678.4:c.218C>T	p.Thr73Met	p.T73M	ENST00000368678		73	aCg/aTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227954	53227954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	240	793	1	ENST00000375401.3:c.2360G>A	p.Arg787Gln	p.R787Q	ENST00000375401	NM_004187.3	787	cGg/cAg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93964487	93964487	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1219702649		P-0041252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	162	476	0	ENST00000369303.4:c.2410G>A	p.Ala804Thr	p.A804T	ENST00000369303	NM_004440.3	804	Gca/Aca																																																																															
MET	4233	MSKCC	GRCh37	7	116397553	116397553	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	211	307	0	ENST00000397752.3:c.1925A>T	p.Asn642Ile	p.N642I	ENST00000397752	NM_000245.2	642	aAt/aTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0041320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	84	208	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	72	492	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913288		P-0041320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	25	370	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0041320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	126	195	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151884835	151884836	+	stop_gained	Nonsense_Mutation	DNP	GA	GA	TT			P-0041320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	195	417	0	ENST00000262189.6:c.4757_4758delinsAA	p.Phe1586Ter	p.F1586*	ENST00000262189	NM_170606.2	1586	tTC/tAA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	183	356	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0041386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	154	655	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443642	49443729	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCAACTCCATGGACAGGGAGCCACCCCCCTCCGGGTCTGGAGAGCCCAGGAGGGGCTCTGAGCCAGGAAAACTGGCACTGGCATCA	CCCCAACTCCATGGACAGGGAGCCACCCCCCTCCGGGTCTGGAGAGCCCAGGAGGGGCTCTGAGCCAGGAAAACTGGCACTGGCATCA	-			P-0041386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	158	664	0	ENST00000301067.7:c.3642_3729del	p.Asp1215SerfsTer86	p.D1215Sfs*86	ENST00000301067	NM_003482.3	1214	ggTGATGCCAGTGCCAGTTTTCCTGGCTCAGAGCCCCTCCTGGGCTCTCCAGACCCGGAGGGGGGTGGCTCCCTGTCCATGGAGTTGGGG/gg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56792511	56792512	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	83	474	0	ENST00000308159.5:c.242dup	p.Ser82GlufsTer7	p.S82Efs*7	ENST00000308159	NM_014669.4	81	ctg/cTtg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591952	48591952	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	AT			P-0041386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	58	322	2	ENST00000342988.3:c.1115delinsAT	p.Arg372AsnfsTer6	p.R372Nfs*6	ENST00000342988	NM_005359.5	372	aGg/aATg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	95	629	0	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																																																															
MGA	23269	MSKCC	GRCh37	15	41988452	41988453	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	69	524	0	ENST00000219905.7:c.1247dup	p.Asn416LysfsTer3	p.N416Kfs*3	ENST00000219905	NM_001164273.1	415	tca/tcAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	28	445	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0041478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	190	600	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117779	70117779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	273	638	0	ENST00000245479.2:c.247G>A	p.Gly83Ser	p.G83S	ENST00000245479	NM_000346.3	83	Ggc/Agc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174399	11174399	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	202	627	0	ENST00000361445.4:c.7276T>G	p.Leu2426Val	p.L2426V	ENST00000361445	NM_004958.3	2426	Ttg/Gtg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37680934	37680935	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0041570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	104	384	0	ENST00000447079.4:c.3104_3105del	p.His1035LeufsTer6	p.H1035Lfs*6	ENST00000447079	NM_015083.1	1035	CAc/c																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	304	391	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112174379	112174379	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs587779786		P-0041600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	70	258	0	ENST00000257430.4:c.3088A>T	p.Lys1030Ter	p.K1030*	ENST00000257430	NM_000038.5	1030	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057520005		P-0041600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	377	705	1	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	163	405	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0041600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	112	285	0	ENST00000257430.4:c.4391_4394del	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	574	408	2	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0041602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	163	469	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56377222	56377224	+	inframe_deletion	In_Frame_Del	DEL	TTT	TTT	-			P-0041602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	30	253	0	ENST00000348428.3:c.843_845del	p.Asp281_Leu282delinsGlu	p.D281_L282delinsE	ENST00000348428	NM_006785.3	281	gaTTTg/gag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168904	32168904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	249	837	0	ENST00000375023.3:c.4129C>T	p.Leu1377Phe	p.L1377F	ENST00000375023	NM_004557.3	1377	Ctc/Ttc																																																																															
ARAF	369	MSKCC	GRCh37	X	47424419	47424419	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	61	330	0	ENST00000377045.4:c.339C>G	p.Asp113Glu	p.D113E	ENST00000377045	NM_001654.4	113	gaC/gaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	73	663	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0041612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	23	269	0	ENST00000257430.4:c.4192_4193del	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
AXL	558	MSKCC	GRCh37	19	41748898	41748898	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1307122843		P-0041612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	74	557	0	ENST00000301178.4:c.1423C>T	p.Arg475Ter	p.R475*	ENST00000301178	NM_021913.4	475	Cga/Tga																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71037156	71037156	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	23	334	0	ENST00000318789.4:c.1135G>T	p.Ala379Ser	p.A379S	ENST00000318789	NM_032682.5	379	Gcc/Tcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951955	178951955	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	42	295	0	ENST00000263967.3:c.3010A>G	p.Met1004Val	p.M1004V	ENST00000263967	NM_006218.2	1004	Atg/Gtg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169985727	169985727	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369872734		P-0041838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	69	539	0	ENST00000295797.4:c.389G>A	p.Arg130His	p.R130H	ENST00000295797	NM_002740.5	130	cGc/cAc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163317719	163317719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	11	109	0	ENST00000271452.3:c.1115C>A	p.Thr372Lys	p.T372K	ENST00000271452	NM_145697.2	372	aCa/aAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	80	154	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
EP300	2033	MSKCC	GRCh37	22	41574383	41574383	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1046088		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	211	646	33	ENST00000263253.7:c.6668A>C	p.Gln2223Pro	p.Q2223P	ENST00000263253	NM_001429.3	2223	cAg/cCg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	356	1014	11	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	53	123	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	281	966	19	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103528120	103528120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376411022		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	97	215	0	ENST00000355739.4:c.3428C>T	p.Ala1143Val	p.A1143V	ENST00000355739	NM_000123.3	1143	gCg/gTg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129329	152129329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	82	749	3	ENST00000206249.3:c.287del	p.Gly96ValfsTer13	p.G96Vfs*13	ENST00000206249	NM_000125.3	94	ctG/ct																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444275	50444275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	56	243	0	ENST00000331340.3:c.205C>T	p.Arg69Cys	p.R69C	ENST00000331340	NM_006060.4	69	Cgt/Tgt																																																																															
AXL	558	MSKCC	GRCh37	19	41744385	41744385	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	156	891	0	ENST00000301178.4:c.1010del	p.Pro337LeufsTer29	p.P337Lfs*29	ENST00000301178	NM_021913.4	335	ggC/gg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	170	959	7	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	135	798	7	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	142	736	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
INSR	3643	MSKCC	GRCh37	19	7267410	7267410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	189	636	0	ENST00000302850.5:c.598G>A	p.Val200Ile	p.V200I	ENST00000302850	NM_000208.2	200	Gtc/Atc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117594	70117594	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	147	827	0	ENST00000245479.2:c.66del	p.Ser23AlafsTer38	p.S23Afs*38	ENST00000245479	NM_000346.3	21	gCc/gc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673724	30673724	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61733207		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	171	570	1	ENST00000376406.3:c.3236G>A	p.Arg1079His	p.R1079H	ENST00000376406	NM_014641.2	1079	cGt/cAt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	54	152	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265522	152265522	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1467954450		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	206	508	0	ENST00000206249.3:c.975del	p.Ile326TyrfsTer17	p.I326Yfs*17	ENST00000206249	NM_000125.3	325	ccG/cc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255142	16255143	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-	rs764595221		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	118	223	2	ENST00000375759.3:c.2417_2418del	p.Arg806ThrfsTer14	p.R806Tfs*14	ENST00000375759	NM_015001.2	803	GAg/g																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78867533	78867533	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185118480		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	174	860	0	ENST00000306801.3:c.2269G>A	p.Gly757Arg	p.G757R	ENST00000306801	NM_020761.2	757	Gga/Aga																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	149	233	1	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
POLE	5426	MSKCC	GRCh37	12	133209298	133209298	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1060500809		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	194	1034	1	ENST00000320574.5:c.6088del	p.Ala2030ProfsTer18	p.A2030Pfs*18	ENST00000320574	NM_006231.2	2030	Gcc/cc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3830754	3830754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	81	220	0	ENST00000262367.5:c.1802G>A	p.Arg601Gln	p.R601Q	ENST00000262367	NM_004380.2	601	cGg/cAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	130	159	2	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																																																															
BCL10	8915	MSKCC	GRCh37	1	85736510	85736511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs387906351		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	53	125	0	ENST00000370580.1:c.136dup	p.Ile46AsnfsTer4	p.I46Nfs*4	ENST00000370580	NM_003921.4	46	ata/aAta																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274911	41274911	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs868651538		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	93	185	0	ENST00000349496.5:c.1161T>A	p.Asn387Lys	p.N387K	ENST00000349496	NM_001904.3	387	aaT/aaA																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738094	145738094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs561220929		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	164	1183	3	ENST00000428558.2:c.2816C>T	p.Ala939Val	p.A939V	ENST00000428558	NM_004260.3	939	gCg/gTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138117	2138117	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759420443		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	213	1146	1	ENST00000219476.3:c.5137C>T	p.Arg1713Cys	p.R1713C	ENST00000219476	NM_000548.3	1713	Cgc/Tgc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047959	180047959	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs933223149		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	215	1165	0	ENST00000261937.6:c.2216G>A	p.Arg739His	p.R739H	ENST00000261937	NM_182925.4	739	cGc/cAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41537115	41537115	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137853039		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	98	193	0	ENST00000263253.7:c.1942C>T	p.Arg648Ter	p.R648*	ENST00000263253	NM_001429.3	648	Cga/Tga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179506	56179506	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	63	104	0	ENST00000399503.3:c.3819G>T	p.Gln1273His	p.Q1273H	ENST00000399503	NM_005921.1	1273	caG/caT																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562745	21562745	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778627422		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	85	281	0	ENST00000382592.4:c.1174G>A	p.Ala392Thr	p.A392T	ENST00000382592	NM_014572.2	392	Gcg/Acg																																																																															
SUFU	51684	MSKCC	GRCh37	10	104359294	104359294	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773037813		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	165	716	0	ENST00000369902.3:c.1015C>T	p.Arg339Trp	p.R339W	ENST00000369902	NM_016169.3	339	Cgg/Tgg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426634	121426634	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	154	662	0	ENST00000257555.6:c.327-2A>T		p.X109_splice	ENST00000257555		109																																																																																
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	123	270	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324892	31324892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	89	281	0	ENST00000412585.2:c.44del	p.Ala15GlyfsTer5	p.A15Gfs*5	ENST00000412585	NM_005514.6	15	gCg/gg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	260	1318	2	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324494	31324494	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs9266161		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	141	883	0	ENST00000412585.2:c.314T>C	p.Leu105Pro	p.L105P	ENST00000412585	NM_005514.6	105	cTg/cCg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99491900	99491900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368518102		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	164	762	1	ENST00000268035.6:c.3685G>A	p.Gly1229Ser	p.G1229S	ENST00000268035	NM_000875.3	1229	Ggc/Agc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438211	49438211	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	201	856	0	ENST00000301067.7:c.5058del	p.Lys1686AsnfsTer36	p.K1686Nfs*36	ENST00000301067	NM_003482.3	1686	aaA/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	196	1117	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349211	89349211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755642596		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	250	799	0	ENST00000301030.4:c.3739G>A	p.Ala1247Thr	p.A1247T	ENST00000301030	NM_001256183.1	1247	Gct/Act																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	184	967	5	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
SPEN	23013	MSKCC	GRCh37	1	16199493	16199493	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752192287		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	120	268	0	ENST00000375759.3:c.266G>A	p.Arg89Gln	p.R89Q	ENST00000375759	NM_015001.2	89	cGg/cAg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180040033	180040033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	209	1204	0	ENST00000261937.6:c.3409C>T	p.Pro1137Ser	p.P1137S	ENST00000261937	NM_182925.4	1137	Ccg/Tcg																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612894	228612894	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746429747		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	174	871	0	ENST00000366696.1:c.133G>A	p.Gly45Ser	p.G45S	ENST00000366696	NM_003493.2	45	Ggc/Agc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109843	115109843	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751621934		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	111	383	0	ENST00000257566.3:c.2035G>A	p.Ala679Thr	p.A679T	ENST00000257566	NM_016569.3	679	Gcc/Acc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448408	49448408	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs797045661		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	185	838	5	ENST00000301067.7:c.303del	p.Ser102AlafsTer28	p.S102Afs*28	ENST00000301067	NM_003482.3	101	ggG/gg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346177	89346177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	64	345	0	ENST00000301030.4:c.6773C>T	p.Ala2258Val	p.A2258V	ENST00000301030	NM_001256183.1	2258	gCt/gTt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988573	36988573	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	191	698	3	ENST00000354822.5:c.80G>A	p.Arg27His	p.R27H	ENST00000354822	NM_001079668.2	27	cGc/cAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66218764	66218764	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	47	93	0	ENST00000273854.3:c.2294del	p.Leu765Ter	p.L765*	ENST00000273854	NM_004439.5	765	tTg/tg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528740	8528740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	89	347	0	ENST00000356435.5:c.392G>A	p.Gly131Asp	p.G131D	ENST00000356435		131	gGc/gAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118367017	118367017	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	140	214	0	ENST00000534358.1:c.5603del	p.Pro1868GlnfsTer3	p.P1868Qfs*3	ENST00000534358	NM_005933.3	1867	Ccc/cc																																																																															
CCND1	595	MSKCC	GRCh37	11	69466001	69466001	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	189	1020	5	ENST00000227507.2:c.839A>T	p.Glu280Val	p.E280V	ENST00000227507	NM_053056.2	280	gAg/gTg																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2494620	2494620	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	179	867	1	ENST00000355716.4:c.760G>T	p.Val254Phe	p.V254F	ENST00000355716	NM_003820.2	254	Gtc/Ttc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258727	16258727	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	127	576	0	ENST00000375759.3:c.5996del	p.Lys1999ArgfsTer23	p.K1999Rfs*23	ENST00000375759	NM_015001.2	1998	Aaa/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023320	27023321	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	21	47	0	ENST00000324856.7:c.428dup	p.Leu143PhefsTer257	p.L143Ffs*257	ENST00000324856	NM_006015.4	142	-/T																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120502072	120502072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	75	188	0	ENST00000256646.2:c.1969G>A	p.Gly657Arg	p.G657R	ENST00000256646	NM_024408.3	657	Gga/Aga																																																																															
RET	5979	MSKCC	GRCh37	10	43619201	43619201	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	163	785	0	ENST00000355710.3:c.2884A>G	p.Asn962Asp	p.N962D	ENST00000355710	NM_020975.4	962	Aac/Gac																																																																															
TET1	80312	MSKCC	GRCh37	10	70404618	70404618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	167	199	0	ENST00000373644.4:c.2132C>T	p.Thr711Ile	p.T711I	ENST00000373644	NM_030625.2	711	aCa/aTa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416835	416835	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1180218375		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	116	276	0	ENST00000399788.2:c.3715C>T	p.Arg1239Trp	p.R1239W	ENST00000399788	NM_001042603.1	1239	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427046	49427046	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	29	843	0	ENST00000301067.7:c.11442C>G	p.His3814Gln	p.H3814Q	ENST00000301067	NM_003482.3	3814	caC/caG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438550	49438550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	175	772	0	ENST00000301067.7:c.4940C>T	p.Thr1647Ile	p.T1647I	ENST00000301067	NM_003482.3	1647	aCc/aTc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121437386	121437386	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	110	932	0	ENST00000257555.6:c.1724T>G	p.Ile575Ser	p.I575S	ENST00000257555		575	aTc/aGc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645901	67645901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	88	259	0	ENST00000264010.4:c.829C>T	p.Arg277Trp	p.R277W	ENST00000264010	NM_006565.3	277	Cgg/Tgg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40368048	40368048	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	202	567	0	ENST00000293328.3:c.1457A>G	p.Asn486Ser	p.N486S	ENST00000293328	NM_012448.3	486	aAt/aGt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120318	70120318	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs80338688		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	258	1272	0	ENST00000245479.2:c.1320C>G	p.Tyr440Ter	p.Y440*	ENST00000245479	NM_000346.3	440	taC/taG																																																																															
MALT1	10892	MSKCC	GRCh37	18	56400627	56400627	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	44	94	0	ENST00000348428.3:c.1223-2A>G		p.X408_splice	ENST00000348428	NM_006785.3	408																																																																																
DOT1L	84444	MSKCC	GRCh37	19	2226491	2226491	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748004837		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	237	1082	0	ENST00000398665.3:c.3971C>T	p.Ala1324Val	p.A1324V	ENST00000398665	NM_032482.2	1324	gCg/gTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7184460	7184460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	170	911	3	ENST00000302850.5:c.841G>A	p.Val281Met	p.V281M	ENST00000302850	NM_000208.2	281	Gtg/Atg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17937583	17937583	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	244	994	0	ENST00000458235.1:c.3344A>G	p.Glu1115Gly	p.E1115G	ENST00000458235	NM_000215.3	1115	gAg/gGg																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731556	47731556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	13	11	0	ENST00000449228.1:c.236G>A	p.Gly79Asp	p.G79D	ENST00000449228	NM_001127240.2	79	gGc/gAc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469500	25469500	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	134	851	0	ENST00000264709.3:c.1268A>G	p.Glu423Gly	p.E423G	ENST00000264709	NM_175629.2	423	gAg/gGg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281940	39281940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	49	96	0	ENST00000402219.2:c.535G>A	p.Asp179Asn	p.D179N	ENST00000402219	NM_005633.3	179	Gat/Aat																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178097988	178097988	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	65	134	0	ENST00000397062.3:c.392A>G	p.Asp131Gly	p.D131G	ENST00000397062	NM_006164.4	131	gAt/gGt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662322	227662322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	161	842	0	ENST00000305123.5:c.1133C>T	p.Pro378Leu	p.P378L	ENST00000305123	NM_005544.2	378	cCg/cTg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538254	9538254	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs888019754		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	28	235	1	ENST00000353224.5:c.1743+1G>A		p.X581_splice	ENST00000353224	NM_177990.2	581																																																																																
PAK7	57144	MSKCC	GRCh37	20	9624915	9624915	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	98	330	0	ENST00000353224.5:c.62T>C	p.Val21Ala	p.V21A	ENST00000353224	NM_177990.2	21	gTt/gCt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31383269	31383269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	170	576	1	ENST00000328111.2:c.1181C>A	p.Pro394His	p.P394H	ENST00000328111	NM_006892.3	394	cCc/cAc																																																																															
RP1-85F18.6	0	MSKCC	GRCh37	22	41565524	41565524	+	splice_donor_variant,non_coding_transcript_variant	Splice_Site	SNP	A	A	G			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	70	159	0	ENST00000415054.1:n.142+2T>C		p.X48_splice	ENST00000415054		48																																																																																
MST1	4485	MSKCC	GRCh37	3	49725269	49725269	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	65	302	0	ENST00000449682.2:c.156del	p.His53MetfsTer25	p.H53Mfs*25	ENST00000449682	NM_020998.3	52	ctA/ct																																																																															
BCL6	604	MSKCC	GRCh37	3	187447235	187447236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	155	750	1	ENST00000232014.4:c.957dup	p.Asn320GlnfsTer11	p.N320Qfs*11	ENST00000232014	NM_001130845.1	319	-/C																																																																															
KDR	3791	MSKCC	GRCh37	4	55972963	55972963	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	117	203	0	ENST00000263923.4:c.1427T>C	p.Val476Ala	p.V476A	ENST00000263923	NM_002253.2	476	gTg/gCg																																																																															
SDHA	6389	MSKCC	GRCh37	5	251134	251134	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138723511		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	56	220	0	ENST00000264932.6:c.1579C>T	p.Arg527Cys	p.R527C	ENST00000264932	NM_004168.2	527	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112102920	112102920	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	85	199	0	ENST00000257430.4:c.258del	p.Lys86AsnfsTer39	p.K86Nfs*39	ENST00000257430	NM_000038.5	85	gtA/gt																																																																															
APC	324	MSKCC	GRCh37	5	112176330	112176330	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	68	141	0	ENST00000257430.4:c.5039A>G	p.Gln1680Arg	p.Q1680R	ENST00000257430	NM_000038.5	1680	cAg/cGg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324016	31324016	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs72558118		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	26	505	0	ENST00000412585.2:c.547T>C	p.Tyr183His	p.Y183H	ENST00000412585	NM_005514.6	183	Tac/Cac																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324064	31324064	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	84	805	0	ENST00000412585.2:c.499A>G	p.Thr167Ala	p.T167A	ENST00000412585	NM_005514.6	167	Acc/Gcc																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519538	137519538	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148158267		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	81	188	0	ENST00000367739.4:c.1100C>T	p.Pro367Leu	p.P367L	ENST00000367739	NM_000416.2	367	cCg/cTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81340824	81340824	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	47	93	0	ENST00000222390.5:c.1417A>G	p.Thr473Ala	p.T473A	ENST00000222390	NM_000601.4	473	Acc/Gcc																																																																															
RHEB	6009	MSKCC	GRCh37	7	151168524	151168524	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	26	160	0	ENST00000262187.5:c.336A>G	p.Ile112Met	p.I112M	ENST00000262187	NM_005614.3	112	atA/atG																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345989	152345989	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775565256		P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	125	228	0	ENST00000359321.1:c.581C>T	p.Thr194Met	p.T194M	ENST00000359321	NM_005431.1	194	aCg/aTg																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540131	23540131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	46	172	0	ENST00000380871.4:c.272C>T	p.Ala91Val	p.A91V	ENST00000380871	NM_006167.3	91	gCa/gTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8317930	8317930	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	62	165	0	ENST00000356435.5:c.5683T>G	p.Phe1895Val	p.F1895V	ENST00000356435		1895	Ttt/Gtt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465510	8465510	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	92	215	0	ENST00000356435.5:c.3670G>T	p.Glu1224Ter	p.E1224*	ENST00000356435		1224	Gaa/Taa																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519912		P-0041957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	221	407	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720726	89720726	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs878853944		P-0041957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	12	180	0	ENST00000371953.3:c.877G>T	p.Gly293Ter	p.G293*	ENST00000371953	NM_000314.4	293	Gga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426687	212426687	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	274	597	0	ENST00000342788.4:c.2428G>C	p.Glu810Gln	p.E810Q	ENST00000342788	NM_005235.2	810	Gag/Cag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720741	89720745	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGA	CAAGA	-			P-0041957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	10	229	0	ENST00000371953.3:c.892_896del	p.Gln298AsnfsTer3	p.Q298Nfs*3	ENST00000371953	NM_000314.4	298	CAAGAa/a																																																																															
KIT	3815	MSKCC	GRCh37	4	55564513	55564513	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	209	507	1	ENST00000288135.5:c.401T>C	p.Val134Ala	p.V134A	ENST00000288135	NM_000222.2	134	gTc/gCc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517780	187517780	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780722653		P-0041957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	73	334	0	ENST00000441802.2:c.12914C>T	p.Ala4305Val	p.A4305V	ENST00000441802	NM_005245.3	4305	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	87	377	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264066389		P-0041960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	37	420	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561525	9561525	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs918236421		P-0041960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	48	521	0	ENST00000353224.5:c.257T>C	p.Leu86Pro	p.L86P	ENST00000353224	NM_177990.2	86	cTa/cCa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135798755	135798755	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	41	217	0	ENST00000298552.3:c.488C>A	p.Ser163Ter	p.S163*	ENST00000298552	NM_001162426.1	163	tCa/tAa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719743	61719743	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	46	558	0	ENST00000401558.2:c.1525C>G	p.His509Asp	p.H509D	ENST00000401558	NM_003400.3	509	Cat/Gat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0041975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	79	629	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592099	67592099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	32	261	0	ENST00000274335.5:c.1915C>T	p.Arg639Ter	p.R639*	ENST00000274335		639	Cga/Tga																																																																															
CYLD	1540	MSKCC	GRCh37	16	50785627	50785627	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	91	556	0	ENST00000398568.2:c.617A>G	p.Glu206Gly	p.E206G	ENST00000398568	NM_001042412.1	206	gAa/gGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577607	7577608	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CCTAGGAG			P-0041975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	29	500	0	ENST00000269305.4:c.673-7_673dup	p.Val225AlafsTer25	p.V225Afs*25	ENST00000269305	NM_001126112.2	225	gtt/gCTCCTAGGtt																																																																															
INHA	3623	MSKCC	GRCh37	2	220439518	220439518	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs540215120		P-0041975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	49	701	0	ENST00000243786.2:c.371G>A	p.Arg124His	p.R124H	ENST00000243786	NM_002191.3	124	cGc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735447	40735447	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs745862490		P-0042004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1156	101	705	0	ENST00000373198.4:c.3426G>T	p.Arg1142Ser	p.R1142S	ENST00000373198	NM_133170.3	1142	agG/agT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520008		P-0042004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	286	746	0	ENST00000269305.4:c.613T>G	p.Tyr205Asp	p.Y205D	ENST00000269305	NM_001126112.2	205	Tat/Gat																																																																															
APC	324	MSKCC	GRCh37	5	112175133	112175133	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	71	229	0	ENST00000257430.4:c.3842C>A	p.Ser1281Ter	p.S1281*	ENST00000257430	NM_000038.5	1281	tCa/tAa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515232	149515232	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80162387		P-0042004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	166	813	1	ENST00000261799.4:c.250G>A	p.Val84Met	p.V84M	ENST00000261799	NM_002609.3	84	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0042018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	269	682	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097236	11097236	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs545634451		P-0042018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	227	695	0	ENST00000344626.4:c.727G>A	p.Gly243Ser	p.G243S	ENST00000344626	NM_003072.3	243	Ggc/Agc																																																																															
MITF	4286	MSKCC	GRCh37	3	70014298	70014298	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142372494		P-0042018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	237	669	0	ENST00000352241.4:c.1462G>A	p.Gly488Ser	p.G488S	ENST00000352241	NM_198159.2	488	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0042018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	228	262	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0042018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	176	420	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0042066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	312	549	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
MET	4233	MSKCC	GRCh37	7	116398635	116398635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	375	589	0	ENST00000397752.3:c.2225C>T	p.Pro742Leu	p.P742L	ENST00000397752	NM_000245.2	742	cCc/cTc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214636	5214636	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs532712500		P-0042066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	194	933	0	ENST00000357368.4:c.4430G>A	p.Arg1477His	p.R1477H	ENST00000357368	NM_002850.3	1477	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579502	7579503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATCTGGA			P-0042066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	186	941	0	ENST00000269305.4:c.177_184dup	p.Glu62ValfsTer64	p.E62Vfs*64	ENST00000269305	NM_001126112.2	62	gaa/gTCCAGATGaa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435739	56435739	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	347	676	0	ENST00000407977.2:c.1398del	p.Ser467AlafsTer35	p.S467Afs*35	ENST00000407977		466	tcC/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579349	7579349	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	578	868	0	ENST00000269305.4:c.338T>G	p.Phe113Cys	p.F113C	ENST00000269305	NM_001126112.2	113	tTc/tGc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962298	2962298	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769577430		P-0042087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1086	70	937	0	ENST00000396946.4:c.2239G>A	p.Val747Ile	p.V747I	ENST00000396946	NM_032415.4	747	Gtc/Atc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226217	2226217	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749330602		P-0042087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	433	928	1	ENST00000398665.3:c.3697G>A	p.Gly1233Ser	p.G1233S	ENST00000398665	NM_032482.2	1233	Ggc/Agc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966769	25966769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	404	845	0	ENST00000435504.4:c.2437G>A	p.Ala813Thr	p.A813T	ENST00000435504		813	Gcc/Acc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636735	8636735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	110	482	0	ENST00000356435.5:c.174C>A	p.Asn58Lys	p.N58K	ENST00000356435		58	aaC/aaA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0042135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	58	482	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931589		P-0042135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	175	355	1	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250472	110250472	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs201986818		P-0042135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	262	617	0	ENST00000374672.4:c.203C>G	p.Ala68Gly	p.A68G	ENST00000374672	NM_004235.4	68	gCg/gGg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870865	12870866	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0042135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	43	355	0	ENST00000228872.4:c.92_93del	p.Asn31ThrfsTer93	p.N31Tfs*93	ENST00000228872	NM_004064.3	31	aAC/a																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18280043	18280044	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0042135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	51	427	1	ENST00000222254.8:c.2126_2127delinsAA	p.Thr709Lys	p.T709K	ENST00000222254	NM_005027.3	709	aCC/aAA																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212483949	212483949	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	199	548	0	ENST00000342788.4:c.2254A>G	p.Ile752Val	p.I752V	ENST00000342788	NM_005235.2	752	Att/Gtt																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42840414	42840415	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-	rs193920966		P-0042135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	214	595	0	ENST00000398585.3:c.1333_1334del	p.Gln445GlufsTer9	p.Q445Efs*9	ENST00000398585	NM_001135099.1	445	CAg/g																																																																															
ATR	545	MSKCC	GRCh37	3	142183962	142183962	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	141	356	0	ENST00000350721.4:c.7018del	p.Glu2340AsnfsTer5	p.E2340Nfs*5	ENST00000350721	NM_001184.3	2340	Gaa/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	173	331	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0042211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	296	558	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0042211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	235	393	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175417	112175418	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0042211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	103	268	0	ENST00000257430.4:c.4127_4128del	p.Tyr1376CysfsTer9	p.Y1376Cfs*9	ENST00000257430	NM_000038.5	1376	TAt/t																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0042211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	333	781	1	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
TP53	7157	MSKCC	GRCh37	17	7579584	7579585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	270	606	0	ENST00000269305.4:c.102dup	p.Pro36AlafsTer7	p.P36Afs*7	ENST00000269305	NM_001126112.2	34	-/C																																																																															
APC	324	MSKCC	GRCh37	5	112174745	112174745	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	104	246	0	ENST00000257430.4:c.3454C>T	p.Gln1152Ter	p.Q1152*	ENST00000257430	NM_000038.5	1152	Cag/Tag																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910737	29910738	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	136	655	0	ENST00000376809.5:c.280dup	p.Gln94ProfsTer5	p.Q94Pfs*5	ENST00000376809	NM_002116.7	93	gcc/gCcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	26	347	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ATM	472	MSKCC	GRCh37	11	108099919	108099919	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs754033733		P-0042259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	10	124	0	ENST00000278616.4:c.200A>G	p.Tyr67Cys	p.Y67C	ENST00000278616	NM_000051.3	67	tAt/tGt																																																																															
POLE	5426	MSKCC	GRCh37	12	133235894	133235894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	22	459	0	ENST00000320574.5:c.3262C>T	p.Pro1088Ser	p.P1088S	ENST00000320574	NM_006231.2	1088	Cct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577147	7577155	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	AGATTACCA	AGATTACCA	-			P-0042259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	46	458	0	ENST00000269305.4:c.783_791del	p.Ser261_Leu264delinsArg	p.S261_L264delinsR	ENST00000269305	NM_001126112.2	261	agTGGTAATCTa/aga																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46603779	46603779	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	38	532	0	ENST00000263734.3:c.1136A>C	p.Lys379Thr	p.K379T	ENST00000263734	NM_001430.4	379	aAg/aCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	43	313	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0042280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	85	714	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17947985	17947985	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587778414		P-0042280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	88	844	3	ENST00000458235.1:c.1739C>T	p.Ser580Leu	p.S580L	ENST00000458235	NM_000215.3	580	tCg/tTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106554	27106554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	106	715	0	ENST00000324856.7:c.6165del	p.Met2055IlefsTer80	p.M2055Ifs*80	ENST00000324856	NM_006015.4	2055	atG/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0042528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	160	701	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112175360	112175360	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	56	255	0	ENST00000257430.4:c.4069G>T	p.Gly1357Ter	p.G1357*	ENST00000257430	NM_000038.5	1357	Gga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022592	31022592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs373221034		P-0042528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	108	588	2	ENST00000375687.4:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000375687	NM_015338.5	693	Cga/Tga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144011	11144011	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755541709		P-0042528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	110	650	1	ENST00000344626.4:c.3592G>A	p.Glu1198Lys	p.E1198K	ENST00000344626	NM_003072.3	1198	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0042610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	137	829	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868145	56868145	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	96	661	1	ENST00000308159.5:c.1643del	p.Leu548ProfsTer23	p.L548Pfs*23	ENST00000308159	NM_014669.4	548	cTc/cc																																																																															
APC	324	MSKCC	GRCh37	5	112175224	112175225	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	108	252	0	ENST00000257430.4:c.3935dup	p.Thr1313AsnfsTer2	p.T1313Nfs*2	ENST00000257430	NM_000038.5	1311	-/G																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	88	525	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0042648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	318	863	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0042648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	47	301	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	121	570	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	93	345	0	ENST00000257430.4:c.4473del	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164782	36164782	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752616540		P-0042648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	372	915	3	ENST00000300305.3:c.1093G>A	p.Gly365Ser	p.G365S	ENST00000300305		365	Ggc/Agc																																																																															
RET	5979	MSKCC	GRCh37	10	43604577	43604577	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776223166		P-0042648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	162	914	1	ENST00000355710.3:c.1162G>A	p.Val388Ile	p.V388I	ENST00000355710	NM_020975.4	388	Gtc/Atc																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805684	46805684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	138	979	1	ENST00000290295.7:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000290295	NM_006361.5	91	cGa/cAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101486	27101486	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370907880		P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	85	902	0	ENST00000324856.7:c.4768C>T	p.Pro1590Ser	p.P1590S	ENST00000324856	NM_006015.4	1590	Ccc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	85	501	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133256105	133256105	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375213599		P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	80	626	1	ENST00000320574.5:c.556G>A	p.Ala186Thr	p.A186T	ENST00000320574	NM_006231.2	186	Gcg/Acg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549082	21549082	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	50	496	0	ENST00000382592.4:c.3194A>G	p.Gln1065Arg	p.Q1065R	ENST00000382592	NM_014572.2	1065	cAg/cGg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061021	38061021	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	17	117	0	ENST00000250448.2:c.968C>G	p.Ala323Gly	p.A323G	ENST00000250448	NM_004496.3	323	gCg/gGg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500663	99500663	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs773129173		P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	47	475	0	ENST00000268035.6:c.4096A>C	p.Thr1366Pro	p.T1366P	ENST00000268035	NM_000875.3	1366	Acc/Ccc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577135	7577143	+	inframe_deletion	In_Frame_Del	DEL	TTCCGTCCC	TTCCGTCCC	-			P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	129	782	2	ENST00000269305.4:c.795_803del	p.Gly266_Asn268del	p.G266_N268del	ENST00000269305	NM_001126112.2	265	ctGGGACGGAAc/ctc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276608	15276608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	115	838	0	ENST00000263388.2:c.5657G>T	p.Gly1886Val	p.G1886V	ENST00000263388	NM_000435.2	1886	gGt/gTt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211355	36211357	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs201152143		P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	97	900	7	ENST00000222270.7:c.1117_1119del	p.Glu373del	p.E373del	ENST00000222270	NM_014727.1	369	aAAGaa/aaa																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867048	45867048	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1477313928		P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	34	519	0	ENST00000391945.4:c.1071C>G	p.Phe357Leu	p.F357L	ENST00000391945	NM_000400.3	357	ttC/ttG																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279807	46279809	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-	rs553605982		P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	19	467	0	ENST00000371998.3:c.3739_3741del	p.Met1247del	p.M1247del	ENST00000371998		1245	ATG/-																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430243	181430243	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	54	293	0	ENST00000325404.1:c.95G>C	p.Gly32Ala	p.G32A	ENST00000325404	NM_003106.3	32	gGc/gCc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149439403	149439403	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	140	717	0	ENST00000286301.3:c.1992G>C	p.Glu664Asp	p.E664D	ENST00000286301	NM_005211.3	664	gaG/gaC																																																																															
MET	4233	MSKCC	GRCh37	7	116380017	116380017	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752842662		P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	107	569	0	ENST00000397752.3:c.1406G>A	p.Arg469Gln	p.R469Q	ENST00000397752	NM_000245.2	469	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0042814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	312	820	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	545	473	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593488	48593488	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs730881954		P-0042814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	158	367	0	ENST00000342988.3:c.1239C>A	p.Tyr413Ter	p.Y413*	ENST00000342988	NM_005359.5	413	taC/taA																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437669	52437669	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	807	796	0	ENST00000460680.1:c.1492G>T	p.Glu498Ter	p.E498*	ENST00000460680	NM_004656.3	498	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574031	7574032	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0042852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	816	780	2	ENST00000269305.4:c.995_996insA	p.Arg333ProfsTer4	p.R333Pfs*4	ENST00000269305	NM_001126112.2	332	atc/atAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604740	48604740	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	290	550	1	ENST00000342988.3:c.1562C>A	p.Thr521Lys	p.T521K	ENST00000342988	NM_005359.5	521	aCa/aAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0042915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	472	655	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	54	157	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0042915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	88	311	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25468174	25468174	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs149738328		P-0042915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	222	734	0	ENST00000264709.3:c.1502A>G	p.Asn501Ser	p.N501S	ENST00000264709	NM_175629.2	501	aAt/aGt																																																																															
APC	324	MSKCC	GRCh37	5	112175399	112175399	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0042915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	73	232	0	ENST00000257430.4:c.4108A>T	p.Lys1370Ter	p.K1370*	ENST00000257430	NM_000038.5	1370	Aaa/Taa																																																																															
POLE	5426	MSKCC	GRCh37	12	133226424	133226424	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	166	567	0	ENST00000320574.5:c.3634A>T	p.Met1212Leu	p.M1212L	ENST00000320574	NM_006231.2	1212	Atg/Ttg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604767	48604767	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	127	350	0	ENST00000342988.3:c.1589A>C	p.His530Pro	p.H530P	ENST00000342988	NM_005359.5	530	cAc/cCc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245512	153245512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	96	323	0	ENST00000281708.4:c.1679A>G	p.Asp560Gly	p.D560G	ENST00000281708	NM_033632.3	560	gAt/gGt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174395	11174395	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	37	696	0	ENST00000361445.4:c.7280T>G	p.Leu2427Arg	p.L2427R	ENST00000361445	NM_004958.3	2427	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T	rs886039483		P-0042971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	112	836	0	ENST00000269305.4:c.376T>A	p.Tyr126Asn	p.Y126N	ENST00000269305	NM_001126112.2	126	Tac/Aac																																																																															
MED12	9968	MSKCC	GRCh37	X	70348536	70348536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	13	347	1	ENST00000374080.3:c.3443G>T	p.Arg1148Leu	p.R1148L	ENST00000374080		1148	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0043060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	93	973	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281713	49281713	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	38	1008	0	ENST00000282018.3:c.760A>G	p.Ile254Val	p.I254V	ENST00000282018	NM_020377.2	254	Atc/Gtc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921998	39921998	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0043060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	96	354	0	ENST00000378444.4:c.4173+1G>T		p.X1391_splice	ENST00000378444	NM_001123385.1	1391																																																																																
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0043063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	456	739	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56401549	56401549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	42	343	0	ENST00000348428.3:c.1411G>A	p.Asp471Asn	p.D471N	ENST00000348428	NM_006785.3	471	Gat/Aat																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577330	64577333	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0043063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	470	733	0	ENST00000337652.1:c.249_252del	p.Ile85SerfsTer33	p.I85Sfs*33	ENST00000337652	NM_130803.2	83	ctGTCT/ct																																																																															
AR	367	MSKCC	GRCh37	X	66766357	66766401	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	-			P-0043063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	88	117	0	ENST00000374690.3:c.1376_1420del	p.Gly459_Gly473del	p.G459_G473del	ENST00000374690	NM_000044.3	457	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0043074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	172	451	3	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0043074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	103	522	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0043074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	281	746	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																															
CBL	867	MSKCC	GRCh37	11	119077232	119077233	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAC	rs373212940		P-0043074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	130	733	1	ENST00000264033.4:c.125_127dup	p.His42dup	p.H42dup	ENST00000264033	NM_005188.3	42	-/CAC																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157517445	157517445	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	150	474	0	ENST00000346085.5:c.4009C>T	p.Arg1337Ter	p.R1337*	ENST00000346085	NM_020732.3	1337	Cga/Tga																																																																															
BCL6	604	MSKCC	GRCh37	3	187440290	187440290	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200887028		P-0043074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	203	543	0	ENST00000232014.4:c.2077G>A	p.Val693Met	p.V693M	ENST00000232014	NM_001130845.1	693	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175215	112175216	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAAAAGATTG			P-0043074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	36	244	0	ENST00000257430.4:c.3928_3937dup	p.Thr1313LysfsTer5	p.T1313Kfs*5	ENST00000257430	NM_000038.5	1308	-/GAAAAGATTG																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372055	55372055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	205	480	0	ENST00000297316.4:c.745G>A	p.Gly249Ser	p.G249S	ENST00000297316	NM_022454.3	249	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	27	463	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	37	326	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	122	484	4	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15297996	15297996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142787620		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	166	820	2	ENST00000263388.2:c.1760G>A	p.Arg587His	p.R587H	ENST00000263388	NM_000435.2	587	cGc/cAc																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	19	186	1	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	38	343	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15950396	15950396	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201721277		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	58	496	0	ENST00000268712.3:c.6548G>A	p.Arg2183His	p.R2183H	ENST00000268712	NM_006311.3	2183	cGc/cAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589147	67589147	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	22	267	0	ENST00000274335.5:c.1135A>G	p.Lys379Glu	p.K379E	ENST00000274335		379	Aaa/Gaa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	93	425	11	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs758630849		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	55	552	0	ENST00000305921.3:c.1349del	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549884	187549884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756351356		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	57	317	1	ENST00000441802.2:c.4357C>T	p.Arg1453Cys	p.R1453C	ENST00000441802	NM_005245.3	1453	Cgt/Tgt																																																																															
FLCN	201163	MSKCC	GRCh37	17	17117087	17117087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764899882		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	143	582	2	ENST00000285071.4:c.1622C>T	p.Ala541Val	p.A541V	ENST00000285071	NM_144997.5	541	gCg/gTg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	81	555	0	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912103	50912103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1237089094		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	151	809	0	ENST00000440232.2:c.1837G>A	p.Ala613Thr	p.A613T	ENST00000440232	NM_002691.3	613	Gcc/Acc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136270	2136270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1371745883		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	137	721	0	ENST00000219476.3:c.4739G>A	p.Arg1580Gln	p.R1580Q	ENST00000219476	NM_000548.3	1580	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	91	440	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
TERT	7015	MSKCC	GRCh37	5	1293833	1293833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	124	920	4	ENST00000310581.5:c.1168C>T	p.Arg390Trp	p.R390W	ENST00000310581	NM_198253.2	390	Cgg/Tgg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210837	2210837	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753115153		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	89	466	0	ENST00000398665.3:c.1334C>T	p.Ala445Val	p.A445V	ENST00000398665	NM_032482.2	445	gCg/gTg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12044500	12044500	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367662793		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	36	331	0	ENST00000353533.5:c.1123G>A	p.Val375Ile	p.V375I	ENST00000353533	NM_003010.3	375	Gtt/Att																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	50	166	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261878	16261878	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763414538		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	102	484	0	ENST00000375759.3:c.9143C>T	p.Thr3048Met	p.T3048M	ENST00000375759	NM_015001.2	3048	aCg/aTg																																																																															
MITF	4286	MSKCC	GRCh37	3	70014176	70014176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	129	598	0	ENST00000352241.4:c.1340G>A	p.Gly447Asp	p.G447D	ENST00000352241	NM_198159.2	447	gGc/gAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210692	5210692	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	121	634	0	ENST00000357368.4:c.5359C>T	p.Arg1787Trp	p.R1787W	ENST00000357368	NM_002850.3	1787	Cgg/Tgg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206818	36206818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	110	503	0	ENST00000300305.3:c.694C>T	p.Arg232Trp	p.R232W	ENST00000300305		232	Cgg/Tgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188297	32188297	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs753855314		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	107	741	4	ENST00000375023.3:c.1044del	p.Gly349AlafsTer49	p.G349Afs*49	ENST00000375023	NM_004557.3	348	ggC/gg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610059	81610059	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121908872		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	47	379	0	ENST00000298171.2:c.1657G>A	p.Ala553Thr	p.A553T	ENST00000298171	NM_000369.2	553	Gcc/Acc																																																																															
MST1	4485	MSKCC	GRCh37	3	49725324	49725324	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748664213		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	28	523	1	ENST00000449682.2:c.101G>A	p.Arg34His	p.R34H	ENST00000449682	NM_020998.3	34	cGc/cAc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731065	162731065	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747307320		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	74	433	0	ENST00000367921.3:c.920G>A	p.Arg307His	p.R307H	ENST00000367921	NM_006182.2	307	cGc/cAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354375	354375	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs910854855		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	190	754	0	ENST00000262320.3:c.1183C>T	p.Arg395Cys	p.R395C	ENST00000262320	NM_003502.3	395	Cgc/Tgc																																																																															
B2M	567	MSKCC	GRCh37	15	45003788	45003788	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	129	461	0	ENST00000558401.1:c.44T>C	p.Leu15Pro	p.L15P	ENST00000558401	NM_004048.2	15	cTt/cCt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031919	10031919	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs901717931		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	80	699	0	ENST00000330684.3:c.904G>A	p.Ala302Thr	p.A302T	ENST00000330684	NM_001134407.1	302	Gct/Act																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	100	638	5	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631102	69631102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121917704		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	93	655	0	ENST00000334134.2:c.310C>T	p.Arg104Ter	p.R104*	ENST00000334134	NM_005247.2	104	Cga/Tga																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435099	110435099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	172	719	2	ENST00000375856.3:c.3302C>T	p.Pro1101Leu	p.P1101L	ENST00000375856	NM_003749.2	1101	cCg/cTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993075	72993075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	89	820	0	ENST00000268489.5:c.970G>A	p.Ala324Thr	p.A324T	ENST00000268489	NM_006885.3	324	Gct/Act																																																																															
WT1	7490	MSKCC	GRCh37	11	32417875	32417875	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	94	472	0	ENST00000332351.3:c.1177T>C	p.Cys393Arg	p.C393R	ENST00000332351	NM_024426.4	393	Tgt/Cgt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99478220	99478220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	59	332	1	ENST00000268035.6:c.3124C>T	p.Arg1042Cys	p.R1042C	ENST00000268035	NM_000875.3	1042	Cgt/Tgt																																																																															
RAD51	5888	MSKCC	GRCh37	15	40993283	40993283	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1428987216		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	28	377	0	ENST00000267868.3:c.109G>A	p.Asp37Asn	p.D37N	ENST00000267868	NM_002875.4	37	Gat/Aat																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39570468	39570468	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs267605182		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	20	205	0	ENST00000262039.4:c.664C>T	p.Arg222Ter	p.R222*	ENST00000262039	NM_002647.2	222	Cga/Tga																																																																															
TERT	7015	MSKCC	GRCh37	5	1294382	1294382	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs943176303		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	115	575	0	ENST00000310581.5:c.619G>A	p.Val207Ile	p.V207I	ENST00000310581	NM_198253.2	207	Gtc/Atc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240069	41240069	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1482440466		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	10	25	0	ENST00000379561.5:c.281T>C	p.Val94Ala	p.V94A	ENST00000379561	NM_002015.3	94	gTg/gCg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73342975	73342975	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757306363		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	35	301	0	ENST00000377767.4:c.1831C>T	p.Arg611Cys	p.R611C	ENST00000377767	NM_014953.3	611	Cgt/Tgt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129249	152129249	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771540162		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	123	695	2	ENST00000206249.3:c.202G>A	p.Ala68Thr	p.A68T	ENST00000206249	NM_000125.3	68	Gcc/Acc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420213	49420213	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267607237		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	145	646	0	ENST00000301067.7:c.15536G>A	p.Arg5179His	p.R5179H	ENST00000301067	NM_003482.3	5179	cGt/cAt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226490	2226490	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780810017		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	195	844	0	ENST00000398665.3:c.3970G>A	p.Ala1324Thr	p.A1324T	ENST00000398665	NM_032482.2	1324	Gcg/Acg																																																																															
MITF	4286	MSKCC	GRCh37	3	69928454	69928454	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs559222331		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	142	615	0	ENST00000352241.4:c.274G>A	p.Val92Met	p.V92M	ENST00000352241	NM_198159.2	92	Gtg/Atg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200297	138200297	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs556022420		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	80	437	0	ENST00000237289.4:c.1715G>A	p.Arg572Gln	p.R572Q	ENST00000237289	NM_001270507.1	572	cGg/cAg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906768	50906768	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373046355		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	132	774	0	ENST00000440232.2:c.1156C>T	p.Arg386Cys	p.R386C	ENST00000440232	NM_002691.3	386	Cgt/Tgt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953083	2953083	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1322611135		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	133	728	0	ENST00000396946.4:c.2857G>A	p.Glu953Lys	p.E953K	ENST00000396946	NM_032415.4	953	Gag/Aag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781318	3781318	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	160	858	0	ENST00000262367.5:c.5047C>A	p.Arg1683Ser	p.R1683S	ENST00000262367	NM_004380.2	1683	Cgc/Agc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829646	72829646	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767087836		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	51	627	0	ENST00000268489.5:c.6935G>A	p.Arg2312Gln	p.R2312Q	ENST00000268489	NM_006885.3	2312	cGg/cAg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944156	81944156	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773800539		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	121	638	3	ENST00000359376.3:c.1765C>T	p.Arg589Cys	p.R589C	ENST00000359376	NM_002661.3	589	Cgc/Tgc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030588	48030588	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63749843		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	70	356	1	ENST00000234420.5:c.3202C>T	p.Arg1068Ter	p.R1068*	ENST00000234420	NM_000179.2	1068	Cga/Tga																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743839	46743839	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs142058773		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	99	701	0	ENST00000371975.4:c.2129C>G	p.Thr710Ser	p.T710S	ENST00000371975	NM_003579.3	710	aCt/aGt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65310435	65310435	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	95	431	0	ENST00000342505.4:c.2251+2T>G		p.X751_splice	ENST00000342505	NM_002227.2	751																																																																																
JAK1	3716	MSKCC	GRCh37	1	65344706	65344706	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	59	272	0	ENST00000342505.4:c.329+2T>C		p.X110_splice	ENST00000342505	NM_002227.2	110																																																																																
JAK1	3716	MSKCC	GRCh37	1	65344711	65344711	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	63	281	0	ENST00000342505.4:c.326T>G	p.Met109Arg	p.M109R	ENST00000342505	NM_002227.2	109	aTg/aGg																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226259103	226259103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	11	27	0	ENST00000366813.1:c.334G>A	p.Ala112Thr	p.A112T	ENST00000366813		112	Gct/Act																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94203728	94203728	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	24	282	0	ENST00000323929.3:c.926T>C	p.Met309Thr	p.M309T	ENST00000323929	NM_005591.3	309	aTg/aCg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998573	100998573	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	139	691	0	ENST00000325455.5:c.1229A>G	p.Asn410Ser	p.N410S	ENST00000325455	NM_001202474.3	410	aAc/aGc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	422253	422253	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374400044		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	60	497	0	ENST00000399788.2:c.3005G>A	p.Arg1002Gln	p.R1002Q	ENST00000399788	NM_001042603.1	1002	cGa/cAa																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025633	1025633	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754974791		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	22	575	0	ENST00000358495.3:c.742G>A	p.Ala248Thr	p.A248T	ENST00000358495	NM_134424.2	248	Gcc/Acc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46205293	46205293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	43	429	0	ENST00000334344.6:c.377C>T	p.Ala126Val	p.A126V	ENST00000334344	NM_152641.2	126	gCa/gTa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863394	57863394	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs533875222		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	129	711	1	ENST00000228682.2:c.1489C>T	p.Arg497Cys	p.R497C	ENST00000228682	NM_005269.2	497	Cgc/Tgc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865699	57865699	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	145	805	0	ENST00000228682.2:c.3176T>C	p.Leu1059Pro	p.L1059P	ENST00000228682	NM_005269.2	1059	cTg/cCg																																																																															
MSI1	4440	MSKCC	GRCh37	12	120783437	120783437	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	99	637	0	ENST00000257552.2:c.1048-2A>G		p.X350_splice	ENST00000257552	NM_002442.3	350																																																																																
ERCC5	2073	MSKCC	GRCh37	13	103520472	103520472	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1187994214		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	21	221	0	ENST00000355739.4:c.2543G>A	p.Arg848Gln	p.R848Q	ENST00000355739	NM_000123.3	848	cGg/cAg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103528186	103528186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	82	388	0	ENST00000355739.4:c.3494C>T	p.Ala1165Val	p.A1165V	ENST00000355739	NM_000123.3	1165	gCc/gTc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436072	110436072	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	219	803	0	ENST00000375856.3:c.2329A>G	p.Thr777Ala	p.T777A	ENST00000375856	NM_003749.2	777	Acg/Gcg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639155	3639155	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777033175		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	144	771	2	ENST00000294008.3:c.4484C>T	p.Ala1495Val	p.A1495V	ENST00000294008	NM_032444.2	1495	gCg/gTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89383346	89383346	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	122	609	1	ENST00000301030.4:c.82A>G	p.Lys28Glu	p.K28E	ENST00000301030	NM_001256183.1	28	Aaa/Gaa																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7978924	7978924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145434489		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	100	388	0	ENST00000319144.4:c.1643G>A	p.Arg548Gln	p.R548Q	ENST00000319144	NM_001139.2	548	cGg/cAg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2223454	2223454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	93	443	0	ENST00000398665.3:c.3565C>T	p.Pro1189Ser	p.P1189S	ENST00000398665	NM_032482.2	1189	Cca/Tca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271900	15271900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	126	856	0	ENST00000263388.2:c.6539C>A	p.Pro2180His	p.P2180H	ENST00000263388	NM_000435.2	2180	cCt/cAt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276251	15276251	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752426825		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	166	626	0	ENST00000263388.2:c.5743C>T	p.Arg1915Cys	p.R1915C	ENST00000263388	NM_000435.2	1915	Cgc/Tgc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967069	18967069	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	137	711	0	ENST00000262803.5:c.1784A>G	p.Tyr595Cys	p.Y595C	ENST00000262803	NM_002911.3	595	tAc/tGc																																																																															
AKT2	208	MSKCC	GRCh37	19	40761138	40761138	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	175	640	0	ENST00000392038.2:c.214A>G	p.Thr72Ala	p.T72A	ENST00000392038	NM_001626.4	72	Acc/Gcc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753278	42753278	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1272093617		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	191	905	0	ENST00000222329.4:c.986G>A	p.Arg329His	p.R329H	ENST00000222329	NM_006494.2	329	cGc/cAc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965986	25965986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	89	684	0	ENST00000435504.4:c.3220G>A	p.Val1074Ile	p.V1074I	ENST00000435504		1074	Gtt/Att																																																																															
ALK	238	MSKCC	GRCh37	2	29551271	29551271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	132	680	1	ENST00000389048.3:c.1359G>T	p.Gln453His	p.Q453H	ENST00000389048	NM_004304.4	453	caG/caT																																																																															
PMS1	5378	MSKCC	GRCh37	2	190742113	190742113	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	27	375	0	ENST00000441310.2:c.2750A>G	p.His917Arg	p.H917R	ENST00000441310	NM_000534.4	917	cAt/cGt																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794348	242794348	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	106	712	0	ENST00000334409.5:c.592+2T>C		p.X198_splice	ENST00000334409	NM_005018.2	198																																																																																
DNMT3B	1789	MSKCC	GRCh37	20	31387128	31387128	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750849178		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	138	534	1	ENST00000328111.2:c.1753G>A	p.Ala585Thr	p.A585T	ENST00000328111	NM_006892.3	585	Gcg/Acg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24143163	24143163	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	108	624	0	ENST00000263121.7:c.395T>C	p.Val132Ala	p.V132A	ENST00000263121	NM_003073.3	132	gTa/gCa																																																																															
ATR	545	MSKCC	GRCh37	3	142177952	142177952	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	22	291	0	ENST00000350721.4:c.7351T>C	p.Tyr2451His	p.Y2451H	ENST00000350721	NM_001184.3	2451	Tac/Cac																																																																															
TP63	8626	MSKCC	GRCh37	3	189608661	189608661	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	41	400	0	ENST00000264731.3:c.1736A>G	p.Tyr579Cys	p.Y579C	ENST00000264731	NM_003722.4	579	tAc/tGc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177079	56177079	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	27	236	0	ENST00000399503.3:c.2349A>C	p.Gln783His	p.Q783H	ENST00000399503	NM_005921.1	783	caA/caC																																																																															
APC	324	MSKCC	GRCh37	5	112175684	112175684	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	51	295	0	ENST00000257430.4:c.4393del	p.Ser1465ValfsTer8	p.S1465Vfs*8	ENST00000257430	NM_000038.5	1465	Agt/gt																																																																															
NPM1	4869	MSKCC	GRCh37	5	170832331	170832331	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	71	477	0	ENST00000296930.5:c.700del	p.Thr234LeufsTer11	p.T234Lfs*11	ENST00000296930	NM_002520.6	232	gAa/ga																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652146	36652146	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	146	663	0	ENST00000244741.5:c.268G>T	p.Gly90Ter	p.G90*	ENST00000244741	NM_000389.4	90	Gga/Tga																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94124419	94124419	+	splice_donor_variant	Splice_Site	SNP	A	A	G	rs528743765		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	26	329	0	ENST00000369303.4:c.162+2T>C		p.X54_splice	ENST00000369303	NM_004440.3	54																																																																																
PRDM1	639	MSKCC	GRCh37	6	106534452	106534452	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	52	248	1	ENST00000369096.4:c.24A>C	p.Lys8Asn	p.K8N	ENST00000369096	NM_001198.3	8	aaA/aaC																																																																															
CDK6	1021	MSKCC	GRCh37	7	92355092	92355092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	10	207	0	ENST00000265734.4:c.385C>A	p.Leu129Ile	p.L129I	ENST00000265734	NM_001259.6	129	Ctt/Att																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845609	151845609	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369745886		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	66	576	1	ENST00000262189.6:c.13403C>T	p.Thr4468Met	p.T4468M	ENST00000262189	NM_170606.2	4468	aCg/aTg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271298	38271298	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	117	850	0	ENST00000425967.3:c.2410C>A	p.Leu804Met	p.L804M	ENST00000425967	NM_001174067.1	804	Ctg/Atg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864735	68864735	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1459888665		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	137	550	1	ENST00000288368.4:c.106C>T	p.Arg36Trp	p.R36W	ENST00000288368	NM_024870.2	36	Cgg/Tgg																																																																															
ABL1	25	MSKCC	GRCh37	9	133759593	133759593	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1476030646		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	187	806	0	ENST00000318560.5:c.1916G>A	p.Arg639Gln	p.R639Q	ENST00000318560	NM_005157.4	639	cGa/cAa																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1314946	1314946	+	downstream_gene_variant	3'Flank	SNP	C	C	T	rs754939213		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	50	472	0				ENST00000381566																																																																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0043158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	23	350	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0043184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	61	520	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	50	677	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0043254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	112	340	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0043254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	65	311	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0043254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	489	530	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
EPAS1	2034	MSKCC	GRCh37	2	46602969	46602969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs574490008		P-0043254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	454	670	0	ENST00000263734.3:c.1027G>A	p.Val343Ile	p.V343I	ENST00000263734	NM_001430.4	343	Gtc/Atc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	50	535	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	48	331	0				ENST00000310581	NM_198253.2																																																																																	
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	95	534	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	78	475	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	43	370	0	ENST00000257430.4:c.4473del	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711915	89711915	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs786204866		P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	91	509	0	ENST00000371953.3:c.533A>G	p.Tyr178Cys	p.Y178C	ENST00000371953	NM_000314.4	178	tAt/tGt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967309	134967309	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs186851943		P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	76	606	0	ENST00000398015.3:c.2648G>A	p.Arg883Gln	p.R883Q	ENST00000398015	NM_004441.4	883	cGg/cAg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522740	67522741	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	54	361	0	ENST00000274335.5:c.244dup	p.Ile82AsnfsTer24	p.I82Nfs*24	ENST00000274335		79	-/A																																																																															
RAD50	10111	MSKCC	GRCh37	5	131915579	131915579	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28903087		P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	29	279	0	ENST00000265335.6:c.577C>T	p.Arg193Trp	p.R193W	ENST00000265335		193	Cgg/Tgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151875055	151875055	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	65	189	0	ENST00000262189.6:c.7483C>T	p.Gln2495Ter	p.Q2495*	ENST00000262189	NM_170606.2	2495	Caa/Taa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262154	16262154	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761478249		P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	26	309	0	ENST00000375759.3:c.9419C>T	p.Pro3140Leu	p.P3140L	ENST00000375759	NM_015001.2	3140	cCg/cTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692949	89692949	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	36	671	0	ENST00000371953.3:c.433T>A	p.Phe145Ile	p.F145I	ENST00000371953	NM_000314.4	145	Ttt/Att																																																																															
AXL	558	MSKCC	GRCh37	19	41758319	41758319	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	100	661	0	ENST00000301178.4:c.1775T>C	p.Phe592Ser	p.F592S	ENST00000301178	NM_021913.4	592	tTt/tCt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441268	52441268	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	79	568	0	ENST00000460680.1:c.502T>C	p.Phe168Leu	p.F168L	ENST00000460680	NM_004656.3	168	Ttc/Ctc																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374844	149374844	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	58	347	0	ENST00000360632.3:c.250C>A	p.His84Asn	p.H84N	ENST00000360632	NM_015472.4	84	Cat/Aat																																																																															
MED12	9968	MSKCC	GRCh37	X	70342361	70342361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	96	591	0	ENST00000374080.3:c.1252C>T	p.Arg418Cys	p.R418C	ENST00000374080		418	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	607	425	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0043346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	271	664	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170531	11170531	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	264	649	0	ENST00000344626.4:c.4738G>T	p.Glu1580Ter	p.E1580*	ENST00000344626	NM_003072.3	1580	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913240		P-0043361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	139	449	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
APC	324	MSKCC	GRCh37	5	112175417	112175418	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0043361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	52	260	0	ENST00000257430.4:c.4127_4128del	p.Tyr1376CysfsTer9	p.Y1376Cfs*9	ENST00000257430	NM_000038.5	1376	TAt/t																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0043361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	35	283	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
MGA	23269	MSKCC	GRCh37	15	42041074	42041074	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	200	586	0	ENST00000219905.7:c.5452C>T	p.Arg1818Ter	p.R1818*	ENST00000219905	NM_001164273.1	1818	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782292		P-0043361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	72	457	0	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108172509	108172510	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	48	236	1	ENST00000278616.4:c.5318dup	p.Phe1774ValfsTer8	p.F1774Vfs*8	ENST00000278616	NM_000051.3	1771	aga/agAa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0043397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	199	612	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0043397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	83	266	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0043397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	30	302	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0043397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	506	942	1	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18972931	18972931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	179	747	1	ENST00000262803.5:c.2570G>A	p.Arg857Lys	p.R857K	ENST00000262803	NM_002911.3	857	aGg/aAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0043480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	99	527	0	ENST00000275493.2:c.2303_2311dup	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0043592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	96	469	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0043592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	529	921	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0043622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	53	527	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	34	243	0	ENST00000257430.4:c.4199del	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830777	72830777	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752574946		P-0043622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	54	458	0	ENST00000268489.5:c.5804G>A	p.Arg1935His	p.R1935H	ENST00000268489	NM_006885.3	1935	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916881	178916881	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	50	483	0	ENST00000263967.3:c.268T>G	p.Cys90Gly	p.C90G	ENST00000263967	NM_006218.2	90	Tgt/Ggt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31451710	31451710	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1466433904		P-0043622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	35	281	0	ENST00000344624.3:c.2612G>A	p.Arg871His	p.R871H	ENST00000344624		871	cGc/cAc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675405	30675405	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	55	431	0	ENST00000376406.3:c.2951T>A	p.Val984Glu	p.V984E	ENST00000376406	NM_014641.2	984	gTa/gAa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101908790	101908790	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	32	248	0	ENST00000374994.4:c.1154A>G	p.Asp385Gly	p.D385G	ENST00000374994	NM_004612.2	385	gAt/gGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	99	435	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459758	149459758	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1029057991		P-0043650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1707	782	862	0	ENST00000286301.3:c.449G>A	p.Arg150His	p.R150H	ENST00000286301	NM_005211.3	150	cGc/cAc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170013719	170013719	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1388201066		P-0043650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	50	136	0	ENST00000295797.4:c.1438C>T	p.Arg480Cys	p.R480C	ENST00000295797	NM_002740.5	480	Cgc/Tgc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488685	212488685	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs138873985		P-0043650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	156	485	0	ENST00000342788.4:c.2164A>G	p.Lys722Glu	p.K722E	ENST00000342788	NM_005235.2	722	Aaa/Gaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0043719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	61	235	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912655		P-0043719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	204	433	0	ENST00000269305.4:c.725G>C	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	tGc/tCc																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	115	202	0	ENST00000257430.4:c.4469del	p.His1490LeufsTer17	p.H1490Lfs*17	ENST00000257430	NM_000038.5	1490	cAt/ct																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423605	88423605	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	74	351	0	ENST00000360948.2:c.2230T>A	p.Tyr744Asn	p.Y744N	ENST00000360948	NM_001012338.2	744	Tac/Aac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187530443	187530443	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	36	173	0	ENST00000441802.2:c.10100A>G	p.Asn3367Ser	p.N3367S	ENST00000441802	NM_005245.3	3367	aAc/aGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106336	27106337	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	137	467	0	ENST00000324856.7:c.5952_5953del	p.Ser1985GlnfsTer13	p.S1985Qfs*13	ENST00000324856	NM_006015.4	1983	TGt/t																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363268	40363268	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201425251		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	156	471	0	ENST00000397332.2:c.961C>T	p.Arg321Cys	p.R321C	ENST00000397332	NM_001033082.2	321	Cgc/Tgc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874274	155874274	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1185965337		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	103	436	0	ENST00000368323.3:c.257G>A	p.Arg86Gln	p.R86Q	ENST00000368323	NM_006912.5	86	cGg/cAg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175813	176175813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	36	342	0	ENST00000367669.3:c.302G>A	p.Gly101Asp	p.G101D	ENST00000367669	NM_022457.5	101	gGc/gAc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206651652	206651652	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	180	634	2	ENST00000367120.3:c.962T>C	p.Leu321Pro	p.L321P	ENST00000367120	NM_014002.3	321	cTg/cCg																																																																															
RET	5979	MSKCC	GRCh37	10	43597893	43597895	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	130	673	0	ENST00000355710.3:c.443_445del	p.Ser148del	p.S148del	ENST00000355710	NM_020975.4	147	ttCTCc/ttc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653780	89653781	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	27	264	0	ENST00000371953.3:c.80-1_80del		p.X27_splice	ENST00000371953	NM_000314.4	27																																																																																
PTEN	5728	MSKCC	GRCh37	10	89692910	89692910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	75	394	0	ENST00000371953.3:c.394G>A	p.Gly132Ser	p.G132S	ENST00000371953	NM_000314.4	132	Ggt/Agt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	132	382	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925589	114925589	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs749975791		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	145	581	0	ENST00000543371.1:c.1667T>C	p.Leu556Pro	p.L556P	ENST00000543371	NM_001198531.1	556	cTg/cCg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925646	114925646	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779491224		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	149	632	0	ENST00000543371.1:c.1724C>T	p.Pro575Leu	p.P575L	ENST00000543371	NM_001198531.1	575	cCg/cTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941862	71941862	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	61	523	0	ENST00000298229.2:c.1220T>A	p.Leu407Gln	p.L407Q	ENST00000298229	NM_001567.3	407	cTg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421701	49421701	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	96	536	0	ENST00000301067.7:c.14528del	p.Lys4843ArgfsTer15	p.K4843Rfs*15	ENST00000301067	NM_003482.3	4843	aAg/ag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438691	49438691	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	95	643	0	ENST00000301067.7:c.4799T>G	p.Leu1600Arg	p.L1600R	ENST00000301067	NM_003482.3	1600	cTg/cGg																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38614463	38614463	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	49	350	0	ENST00000299084.4:c.234del	p.Asp79ThrfsTer42	p.D79Tfs*42	ENST00000299084	NM_152594.2	77	Aaa/aa																																																																															
MGA	23269	MSKCC	GRCh37	15	42034986	42034986	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1469072500		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	85	533	0	ENST00000219905.7:c.4828A>G	p.Thr1610Ala	p.T1610A	ENST00000219905	NM_001164273.1	1610	Act/Gct																																																																															
MGA	23269	MSKCC	GRCh37	15	42054396	42054396	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	79	301	0	ENST00000219905.7:c.7585del	p.Arg2529GlufsTer28	p.R2529Efs*28	ENST00000219905	NM_001164273.1	2527	cAa/ca																																																																															
B2M	567	MSKCC	GRCh37	15	45007895	45007896	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	52	274	0	ENST00000558401.1:c.343_344del	p.Trp115GlyfsTer12	p.W115Gfs*12	ENST00000558401	NM_004048.2	114	aaGTgg/aagg																																																																															
B2M	567	MSKCC	GRCh37	15	45007896	45007897	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	70	269	0	ENST00000558401.1:c.346+1dup		p.W115fs	ENST00000558401	NM_004048.2	115	tgg/tGgg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347095	89347095	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	113	522	0	ENST00000301030.4:c.5855A>G	p.His1952Arg	p.H1952R	ENST00000301030	NM_001256183.1	1952	cAc/cGc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348062	89348062	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1466196842		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	224	860	2	ENST00000301030.4:c.4888G>A	p.Gly1630Arg	p.G1630R	ENST00000301030	NM_001256183.1	1630	Ggg/Agg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350035	89350035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	85	641	0	ENST00000301030.4:c.2915A>G	p.His972Arg	p.H972R	ENST00000301030	NM_001256183.1	972	cAc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	135	427	1	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																															
NF1	4763	MSKCC	GRCh37	17	29665120	29665120	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs201336602		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	47	447	0	ENST00000358273.4:c.6782A>G	p.His2261Arg	p.H2261R	ENST00000358273	NM_001042492.2	2261	cAt/cGt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687124	37687124	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	61	512	0	ENST00000447079.4:c.4028G>T	p.Gly1343Val	p.G1343V	ENST00000447079	NM_015083.1	1343	gGg/gTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883561	37883561	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	126	537	0	ENST00000269571.5:c.3173A>G	p.Asp1058Gly	p.D1058G	ENST00000269571		1058	gAc/gGc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47677825	47677825	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	128	482	0	ENST00000347630.2:c.1040A>G	p.His347Arg	p.H347R	ENST00000347630	NM_001007230.1	347	cAc/cGc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	143	602	3	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1297203260		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	111	436	4	ENST00000245479.2:c.916del	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
GNA11	2767	MSKCC	GRCh37	19	3119035	3119035	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1291813342		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	139	512	0	ENST00000078429.4:c.719T>C	p.Val240Ala	p.V240A	ENST00000078429	NM_002067.2	240	gTg/gCg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210893	36210893	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	78	582	2	ENST00000222270.7:c.649del	p.Arg217GlyfsTer22	p.R217Gfs*22	ENST00000222270	NM_014727.1	215	aCc/ac																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	171	681	2	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905875	50905875	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	142	605	2	ENST00000440232.2:c.847C>T	p.Gln283Ter	p.Q283*	ENST00000440232	NM_002691.3	283	Cag/Tag																																																																															
CENPA	1058	MSKCC	GRCh37	2	27016047	27016047	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	142	533	0	ENST00000335756.4:c.323A>G	p.Asp108Gly	p.D108G	ENST00000335756	NM_001809.3	108	gAc/gGc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39222520	39222520	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	89	371	2	ENST00000402219.2:c.3090del	p.Lys1030AsnfsTer6	p.K1030Nfs*6	ENST00000402219	NM_005633.3	1030	aaA/aa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384651	31384651	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	153	603	2	ENST00000328111.2:c.1359del	p.Leu454SerfsTer136	p.L454Sfs*136	ENST00000328111	NM_006892.3	451	gaG/ga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52582098	52582098	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	32	247	0	ENST00000394830.3:c.4730A>G	p.Tyr1577Cys	p.Y1577C	ENST00000394830	NM_018313.4	1577	tAc/tGc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119666143	119666143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769576748		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	62	313	0	ENST00000316626.5:c.338G>A	p.Arg113His	p.R113H	ENST00000316626		113	cGt/cAt																																																																															
TET2	54790	MSKCC	GRCh37	4	106155466	106155466	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749710391		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	88	345	1	ENST00000380013.4:c.367C>T	p.Arg123Cys	p.R123C	ENST00000380013	NM_001127208.2	123	Cgt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	120	413	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153253805	153253805	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	93	376	0	ENST00000281708.4:c.928T>C	p.Tyr310His	p.Y310H	ENST00000281708	NM_033632.3	310	Tac/Cac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541358	187541359	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	86	346	0	ENST00000441802.2:c.6381dup	p.Gln2128SerfsTer7	p.Q2128Sfs*7	ENST00000441802	NM_005245.3	2127	-/T																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629661	187629663	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs760967821		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	145	481	0	ENST00000441802.2:c.1319_1321del	p.Thr440del	p.T440del	ENST00000441802	NM_005245.3	440	aCAAgt/agt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874637	35874637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	77	267	2	ENST00000303115.3:c.799del	p.Arg267GlyfsTer28	p.R267Gfs*28	ENST00000303115	NM_002185.3	265	Aaa/aa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177828	56177828	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	101	331	1	ENST00000399503.3:c.2803del	p.Ser935GlnfsTer2	p.S935Qfs*2	ENST00000399503	NM_005921.1	934	aTt/at																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	56	247	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
APC	324	MSKCC	GRCh37	5	112177265	112177265	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	55	292	0	ENST00000257430.4:c.5978del	p.Pro1993LeufsTer51	p.P1993Lfs*51	ENST00000257430	NM_000038.5	1992	Ccc/cc																																																																															
IRF4	3662	MSKCC	GRCh37	6	407567	407567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	90	306	0	ENST00000380956.4:c.1325G>A	p.Arg442Lys	p.R442K	ENST00000380956	NM_001195286.1	442	aGa/aAa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056566	26056566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1444425351		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	65	233	0	ENST00000343677.2:c.91A>G	p.Thr31Ala	p.T31A	ENST00000343677	NM_005319.3	31	Acg/Gcg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324655	31324655	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	26	293	0	ENST00000412585.2:c.153C>A	p.Tyr51Ter	p.Y51*	ENST00000412585	NM_005514.6	51	taC/taA																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816428	32816428	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	137	537	0	ENST00000354258.4:c.1746+1G>A		p.X582_splice	ENST00000354258	NM_000593.5	582																																																																																
TAP1	6890	MSKCC	GRCh37	6	32821350	32821350	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	65	682	0	ENST00000354258.4:c.244T>G	p.Trp82Gly	p.W82G	ENST00000354258	NM_000593.5	82	Tgg/Ggg																																																																															
FYN	2534	MSKCC	GRCh37	6	112020823	112020823	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	100	302	0	ENST00000368678.4:c.748A>G	p.Thr250Ala	p.T250A	ENST00000368678		250	Acc/Gcc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	57	559	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146945	38146945	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	103	635	1	ENST00000317025.8:c.3197del	p.Asn1066ThrfsTer16	p.N1066Tfs*16	ENST00000317025	NM_023034.1	1066	aAc/ac																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205359	38205359	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	150	600	0	ENST00000317025.8:c.331T>C	p.Tyr111His	p.Y111H	ENST00000317025	NM_023034.1	111	Tat/Cat																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	150	659	1	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341773	8341773	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs761130552		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	100	513	0	ENST00000356435.5:c.4867A>G	p.Arg1623Gly	p.R1623G	ENST00000356435		1623	Aga/Gga																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44879926	44879926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	81	505	0	ENST00000377967.4:c.515G>A	p.Arg172Gln	p.R172Q	ENST00000377967	NM_021140.2	172	cGa/cAa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412473	63412473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	114	652	0	ENST00000330258.3:c.694del	p.Gln232LysfsTer50	p.Q232Kfs*50	ENST00000330258	NM_152424.3	232	Caa/aa																																																																															
XIAP	331	MSKCC	GRCh37	X	123019696	123019696	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147946593		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	96	475	2	ENST00000355640.3:c.184C>T	p.Arg62Trp	p.R62W	ENST00000355640		62	Cgg/Tgg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123200029	123200029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	26	181	0	ENST00000218089.9:c.2101C>T	p.His701Tyr	p.H701Y	ENST00000218089	NM_001042749.1	701	Cat/Tat																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	23	233	2	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324886	31324887	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs760037174		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	62	415	0	ENST00000412585.2:c.49_50insG	p.Leu17ArgfsTer82	p.L17Rfs*82	ENST00000412585	NM_005514.6	17	ctg/cGtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0043816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	98	262	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579855	7579855	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1131691018		P-0043816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	197	482	0	ENST00000269305.4:c.58del	p.Ser20GlnfsTer24	p.S20Qfs*24	ENST00000269305	NM_001126112.2	20	Tca/ca																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004745	16004746	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	179	459	0	ENST00000268712.3:c.2508dup	p.Glu837Ter	p.E837*	ENST00000268712	NM_006311.3	836	-/T																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52722962	52722962	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	166	459	0	ENST00000322088.6:c.1148del	p.Asn383ThrfsTer9	p.N383Tfs*9	ENST00000322088	NM_014225.5	383	Aac/ac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0043876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	222	339	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843495	3843495	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	60	469	0	ENST00000262367.5:c.1108C>T	p.Arg370Ter	p.R370*	ENST00000262367	NM_004380.2	370	Cga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0043876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	204	436	0	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
FGFR1	2260	MSKCC	GRCh37	8	38276891	38277223	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACAGACTCTAGAGCACTTAGTTCATGATATTCCACTGTGCCTTGCCCAGAAGCCAGAAAATAAGGCCCAAAGCTATAAATTAGGGACAATGGAGAGGGCAGGGCATTAGAGGCCCAGAGAGAGAGGTGGTGCTGAGTGTGCAAATCCCCCATCTACTTTCTGTTACCTGTCTGCGCAGAGGGATGCTCTTGGCCAGCTTGTGCACAGCCATCTGGCTGTGGAAGTCACTCTTCTTGGTACCACTCTTCATCTTGTAGACGATGACCGACCCCACCATGCAGGAGATGAGGAAGGCCCCTGTGCAATAGATGATGATCTCCAGGTACAGGGGCG	ACAGACTCTAGAGCACTTAGTTCATGATATTCCACTGTGCCTTGCCCAGAAGCCAGAAAATAAGGCCCAAAGCTATAAATTAGGGACAATGGAGAGGGCAGGGCATTAGAGGCCCAGAGAGAGAGGTGGTGCTGAGTGTGCAAATCCCCCATCTACTTTCTGTTACCTGTCTGCGCAGAGGGATGCTCTTGGCCAGCTTGTGCACAGCCATCTGGCTGTGGAAGTCACTCTTCTTGGTACCACTCTTCATCTTGTAGACGATGACCGACCCCACCATGCAGGAGATGAGGAAGGCCCCTGTGCAATAGATGATGATCTCCAGGTACAGGGGCG	-			P-0043876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	90	119	0	ENST00000425967.3:c.1205_1377+160del		p.X402_splice	ENST00000425967	NM_001174067.1	402																																																																																
SF3B1	23451	MSKCC	GRCh37	2	198266833	198266837	+	protein_altering_variant	In_Frame_Del	DEL	TTCTG	TTCTG	CC			P-0043876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	165	507	0	ENST00000335508.6:c.2095_2099delinsGG	p.Gln699_Lys700delinsGly	p.Q699_K700delinsG	ENST00000335508	NM_012433.2	699	CAGAAa/GGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	371	819	0	ENST00000269305.4:c.403del	p.Cys135AlafsTer35	p.C135Afs*35	ENST00000269305	NM_001126112.2	135	Tgc/gc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662554	227662554	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866672328		P-0044102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	322	597	1	ENST00000305123.5:c.901C>T	p.Arg301Cys	p.R301C	ENST00000305123	NM_005544.2	301	Cgc/Tgc																																																																															
KIT	3815	MSKCC	GRCh37	4	55602733	55602733	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs555650901		P-0044102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	149	384	0	ENST00000288135.5:c.2554G>A	p.Val852Ile	p.V852I	ENST00000288135	NM_000222.2	852	Gtc/Atc																																																																															
MGA	23269	MSKCC	GRCh37	15	41999951	41999951	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	230	549	0	ENST00000219905.7:c.2214T>G	p.Asp738Glu	p.D738E	ENST00000219905	NM_001164273.1	738	gaT/gaG																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225572	26225572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	203	453	0	ENST00000360408.1:c.190C>T	p.Arg64Trp	p.R64W	ENST00000360408	NM_003532.2	64	Cgg/Tgg																																																																															
MET	4233	MSKCC	GRCh37	7	116422147	116422150	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TGTA	TGTA	-			P-0044102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	52	321	0	ENST00000397752.3:c.3632_3632+3del		p.CM1210fs	ENST00000397752	NM_000245.2	1210	TGTAtg/tg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	397	471	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	585	764	0	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0044221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	296	633	3	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
SESN3	143686	MSKCC	GRCh37	11	94908684	94908684	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760970492		P-0044221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	77	508	0	ENST00000536441.1:c.1370G>A	p.Arg457Gln	p.R457Q	ENST00000536441	NM_144665.3	457	cGg/cAg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665219	138665219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	208	796	0	ENST00000330315.3:c.346C>T	p.Pro116Ser	p.P116S	ENST00000330315	NM_023067.3	116	Ccg/Tcg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332830	152332830	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3487	208	484	0	ENST00000206249.3:c.1136T>C	p.Leu379Pro	p.L379P	ENST00000206249	NM_000125.3	379	cTa/cCa																																																																															
MED12	9968	MSKCC	GRCh37	X	70356342	70356342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	99	673	0	ENST00000374080.3:c.5237C>A	p.Pro1746Gln	p.P1746Q	ENST00000374080		1746	cCa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	132	269	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577123	7577123	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs876660333		P-0044286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	41	563	0	ENST00000269305.4:c.815T>A	p.Val272Glu	p.V272E	ENST00000269305	NM_001126112.2	272	gTg/gAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971099	21971099	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	34	301	0	ENST00000304494.5:c.259del	p.Arg87GlyfsTer59	p.R87Gfs*59	ENST00000304494	NM_000077.4	87	Cgg/gg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562482	21562483	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGGCG	rs550642106		P-0044288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	25	102	3	ENST00000382592.4:c.1431_1436dup	p.Pro479_Ala480dup	p.P479_A480dup	ENST00000382592	NM_014572.2	479	ccg/ccCGCCCCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0044288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	455	617	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857785	9857785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	60	413	0	ENST00000330684.3:c.3616C>T	p.Arg1206Ter	p.R1206*	ENST00000330684	NM_001134407.1	1206	Cga/Tga																																																																															
ALK	238	MSKCC	GRCh37	2	30142885	30142885	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766999851		P-0044288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	427	598	2	ENST00000389048.3:c.641G>A	p.Arg214His	p.R214H	ENST00000389048	NM_004304.4	214	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829281	72829281	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	704	577	1	ENST00000268489.5:c.7300G>T	p.Glu2434Ter	p.E2434*	ENST00000268489	NM_006885.3	2434	Gaa/Taa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21994138	21994138	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0044310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	85	476	0	ENST00000361570.3:c.316G>A	p.Gly106Ser	p.G106S	ENST00000361570	NM_058195.3	106	Ggt/Agt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675706	30675706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	92	650	1	ENST00000376406.3:c.2650G>A	p.Glu884Lys	p.E884K	ENST00000376406	NM_014641.2	884	Gaa/Aaa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987269	2987269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	49	480	0	ENST00000396946.4:c.160G>A	p.Glu54Lys	p.E54K	ENST00000396946	NM_032415.4	54	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68842753	68842760	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TAAGTATC	TAAGTATC	-			P-0044310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	54	326	0	ENST00000261769.5:c.687+3_687+10del		p.X229_splice	ENST00000261769	NM_004360.3	229																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0044311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	360	484	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70357432	70357432	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	174	581	0	ENST00000374080.3:c.5773T>A	p.Ser1925Thr	p.S1925T	ENST00000374080		1925	Tca/Aca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0044418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	97	587	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	419117	419117	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1443684874		P-0044418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	26	349	0	ENST00000399788.2:c.3230G>A	p.Arg1077Gln	p.R1077Q	ENST00000399788	NM_001042603.1	1077	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087913	27087914	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0044418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	135	667	0	ENST00000324856.7:c.2201_2202insAA	p.Asp734GlufsTer9	p.D734Efs*9	ENST00000324856	NM_006015.4	734	gac/gAAac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061070	38061070	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	29	141	0	ENST00000250448.2:c.919T>C	p.Ser307Pro	p.S307P	ENST00000250448	NM_004496.3	307	Tcg/Ccg																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29207585	29207585	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	100	505	0	ENST00000240100.2:c.211A>G	p.Thr71Ala	p.T71A	ENST00000240100	NM_001394.6	71	Acc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578241	7578241	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	326	692	0	ENST00000269305.4:c.608T>A	p.Val203Glu	p.V203E	ENST00000269305	NM_001126112.2	203	gTg/gAg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95590719	95590719	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	163	294	0	ENST00000343455.3:c.1190G>C	p.Ser397Thr	p.S397T	ENST00000343455	NM_177438.2	397	aGc/aCc																																																																															
APC	324	MSKCC	GRCh37	5	112157592	112157593	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GT	GT	-			P-0044434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	166	353	0	ENST00000257430.4:c.1313_1314del		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
HIST1H3F	8968	MSKCC	GRCh37	6	26250462	26250462	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	282	545	0	ENST00000446824.2:c.372del	p.Asp124GlufsTer17	p.D124Efs*17	ENST00000446824	NM_021018.2	124	gaC/ga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786204864		P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	91	476	2	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551682	150551682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	34	591	0	ENST00000369026.2:c.325G>A	p.Glu109Lys	p.E109K	ENST00000369026	NM_021960.4	109	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7573991	7573991	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	127	1029	0	ENST00000269305.4:c.1036G>T	p.Glu346Ter	p.E346*	ENST00000269305	NM_001126112.2	346	Gag/Tag																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056594	26056594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	24	325	0	ENST00000343677.2:c.63G>T	p.Lys21Asn	p.K21N	ENST00000343677	NM_005319.3	21	aaG/aaT																																																																															
MGA	23269	MSKCC	GRCh37	15	41988452	41988452	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	51	603	0	ENST00000219905.7:c.1244C>G	p.Ser415Ter	p.S415*	ENST00000219905	NM_001164273.1	415	tCa/tGa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118366981	118366981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	33	541	0	ENST00000534358.1:c.5563G>C	p.Asp1855His	p.D1855H	ENST00000534358	NM_005933.3	1855	Gat/Cat																																																																															
RARA	5914	MSKCC	GRCh37	17	38512308	38512308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	114	1127	0	ENST00000254066.5:c.1219C>T	p.Pro407Ser	p.P407S	ENST00000254066	NM_000964.3	407	Ccg/Tcg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028656	12028656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	60	511	0	ENST00000353533.5:c.859C>T	p.Arg287Cys	p.R287C	ENST00000353533	NM_003010.3	287	Cgc/Tgc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982957	201982957	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs374568591		P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	45	890	0	ENST00000359651.3:c.806C>T	p.Ala269Val	p.A269V	ENST00000359651		269	gCg/gTg																																																																															
GNA11	2767	MSKCC	GRCh37	19	3121069	3121069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	89	1038	0	ENST00000078429.4:c.972C>G	p.Ile324Met	p.I324M	ENST00000078429	NM_002067.2	324	atC/atG																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11137003	11137013	+	frameshift_variant	Frame_Shift_Del	DEL	ACTGGCGGCAT	ACTGGCGGCAT	-			P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	78	872	1	ENST00000344626.4:c.3196_3206del	p.Thr1066CysfsTer12	p.T1066Cfs*12	ENST00000344626	NM_003072.3	1066	ACTGGCGGCATt/t																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439262	52439263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTGGGATGGGGCT			P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	54	918	0	ENST00000460680.1:c.966_979dup	p.Ser327LysfsTer13	p.S327Kfs*13	ENST00000460680	NM_004656.3	327	agc/aAGCCCCATCCCACAgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178947127	178947127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	26	447	0	ENST00000263967.3:c.2563C>G	p.His855Asp	p.H855D	ENST00000263967	NM_006218.2	855	Cac/Gac																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839836	27839836	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs963972613		P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	78	835	0	ENST00000328488.2:c.258G>C	p.Gln86His	p.Q86H	ENST00000328488	NM_003533.2	86	caG/caC																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0044473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	45	419	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111886057	111886057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	76	537	0	ENST00000341259.2:c.1679C>T	p.Ser560Phe	p.S560F	ENST00000341259	NM_005475.2	560	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0044473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	297	759	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021792	69021792	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	99	532	0	ENST00000288368.4:c.3080A>C	p.Gln1027Pro	p.Q1027P	ENST00000288368	NM_024870.2	1027	cAg/cCg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	94	515	3	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115277064	115277064	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	29	443	0	ENST00000438362.2:c.719A>C	p.Lys240Thr	p.K240T	ENST00000438362	NM_001242891.1	240	aAg/aCg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120491175	120491175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	113	534	0	ENST00000256646.2:c.2614A>G	p.Ile872Val	p.I872V	ENST00000256646	NM_024408.3	872	Att/Gtt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577419	64577419	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	90	750	3	ENST00000337652.1:c.163C>A	p.Pro55Thr	p.P55T	ENST00000337652	NM_130803.2	55	Cct/Act																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589633	69589633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	56	272	0	ENST00000168712.1:c.220G>T	p.Gly74Cys	p.G74C	ENST00000168712	NM_002007.2	74	Ggc/Tgc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	139	971	3	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	431718	431718	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747207978		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	91	339	0	ENST00000399788.2:c.2291G>A	p.Arg764Gln	p.R764Q	ENST00000399788	NM_001042603.1	764	cGa/cAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49415622	49415622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	120	445	0	ENST00000301067.7:c.16555G>A	p.Asp5519Asn	p.D5519N	ENST00000301067	NM_003482.3	5519	Gat/Aat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420625	49420625	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	217	674	0	ENST00000301067.7:c.15124del	p.Ala5042ProfsTer9	p.A5042Pfs*9	ENST00000301067	NM_003482.3	5042	Gcc/cc																																																																															
RAB35	11021	MSKCC	GRCh37	12	120541645	120541645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	112	607	0	ENST00000229340.5:c.212G>A	p.Arg71His	p.R71H	ENST00000229340	NM_006861.6	71	cGc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133248830	133248830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	133	732	1	ENST00000320574.5:c.1765C>T	p.Pro589Ser	p.P589S	ENST00000320574	NM_006231.2	589	Cct/Tct																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907364	32907365	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	27	325	0	ENST00000380152.3:c.1754dup	p.Lys586GlufsTer4	p.K586Efs*4	ENST00000380152		583	-/A																																																																															
BRCA2	675	MSKCC	GRCh37	13	32930634	32930634	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56070345		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	61	460	0	ENST00000380152.3:c.7505G>A	p.Arg2502His	p.R2502H	ENST00000380152		2502	cGc/cAc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43762174	43762174	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs776812022		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	157	744	0	ENST00000382044.4:c.1271A>C	p.Asn424Thr	p.N424T	ENST00000382044	NM_001141980.1	424	aAc/aCc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	93	427	0	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274171	10274171	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	81	582	0	ENST00000330684.3:c.98C>A	p.Ala33Glu	p.A33E	ENST00000330684	NM_001134407.1	33	gCg/gAg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50815168	50815168	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	90	499	0	ENST00000398568.2:c.1521T>G	p.Cys507Trp	p.C507W	ENST00000398568	NM_001042412.1	507	tgT/tgG																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81914545	81914545	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769793664		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	55	447	0	ENST00000359376.3:c.679G>A	p.Val227Met	p.V227M	ENST00000359376	NM_002661.3	227	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578397	7578397	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	148	715	0	ENST00000269305.4:c.533A>C	p.His178Pro	p.H178P	ENST00000269305	NM_001126112.2	178	cAc/cCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138729528		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	142	745	0	ENST00000269305.4:c.523C>T	p.Arg175Cys	p.R175C	ENST00000269305	NM_001126112.2	175	Cgc/Tgc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17118344	17118344	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	159	859	0	ENST00000285071.4:c.1493A>G	p.Asp498Gly	p.D498G	ENST00000285071	NM_144997.5	498	gAt/gGt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231333	5231333	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	121	634	0	ENST00000357368.4:c.2143A>G	p.Thr715Ala	p.T715A	ENST00000357368	NM_002850.3	715	Acc/Gcc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308338	30308338	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	78	482	0	ENST00000262643.3:c.352A>T	p.Lys118Ter	p.K118*	ENST00000262643	NM_001238.2	118	Aaa/Taa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224532	36224532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759167832		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	159	922	0	ENST00000222270.7:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000222270	NM_014727.1	2332	Cgt/Tgt																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111907707	111907707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757046249		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	72	390	2	ENST00000393256.3:c.481G>A	p.Ala161Thr	p.A161T	ENST00000393256	NM_006538.4	161	Gct/Act																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128030506	128030506	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1313043237		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	78	510	0	ENST00000285398.2:c.1762del	p.Glu588LysfsTer23	p.E588Kfs*23	ENST00000285398	NM_000122.1	588	Gaa/aa																																																																															
CASP8	841	MSKCC	GRCh37	2	202137404	202137404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	47	363	0	ENST00000358485.4:c.632T>C	p.Leu211Pro	p.L211P	ENST00000358485	NM_001080125.1	211	cTg/cCg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660476	227660476	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	89	630	0	ENST00000305123.5:c.2979G>T	p.Gln993His	p.Q993H	ENST00000305123	NM_005544.2	993	caG/caT																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31372633	31372633	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149520896		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	105	653	2	ENST00000328111.2:c.274C>T	p.Arg92Trp	p.R92W	ENST00000328111	NM_006892.3	92	Cgg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770625	40770625	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	29	423	0	ENST00000373198.4:c.2757G>T	p.Gln919His	p.Q919H	ENST00000373198	NM_133170.3	919	caG/caT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100998	41100998	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772057709		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	98	658	0	ENST00000373198.4:c.1358G>A	p.Arg453His	p.R453H	ENST00000373198	NM_133170.3	453	cGc/cAc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29115459	29115460	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	23	103	0	ENST00000328354.6:c.606dup	p.Asp203Ter	p.D203*	ENST00000328354	NM_007194.3	202	-/T																																																																															
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	29	350	0	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																															
EP300	2033	MSKCC	GRCh37	22	41568501	41568501	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	18	226	0	ENST00000263253.7:c.4453-2A>T		p.X1485_splice	ENST00000263253	NM_001429.3	1485																																																																																
TGFBR2	7048	MSKCC	GRCh37	3	30691775	30691775	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766473954		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	66	424	0	ENST00000359013.4:c.352G>A	p.Glu118Lys	p.E118K	ENST00000359013	NM_001024847.2	118	Gag/Aag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125462	47125462	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	52	385	0	ENST00000409792.3:c.5808C>A	p.Cys1936Ter	p.C1936*	ENST00000409792	NM_014159.6	1936	tgC/tgA																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125698	47125698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	70	488	0	ENST00000409792.3:c.5572C>T	p.Pro1858Ser	p.P1858S	ENST00000409792	NM_014159.6	1858	Cct/Tct																																																																															
BCL6	604	MSKCC	GRCh37	3	187451405	187451405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	94	512	1	ENST00000232014.4:c.77G>A	p.Arg26Gln	p.R26Q	ENST00000232014	NM_001130845.1	26	cGg/cAg																																																																															
KDR	3791	MSKCC	GRCh37	4	55955593	55955593	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs373654225		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	33	349	0	ENST00000263923.4:c.3352C>T	p.Arg1118Ter	p.R1118*	ENST00000263923	NM_002253.2	1118	Cga/Tga																																																																															
KDR	3791	MSKCC	GRCh37	4	55955962	55955962	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	54	406	0	ENST00000263923.4:c.3200T>C	p.Leu1067Pro	p.L1067P	ENST00000263923	NM_002253.2	1067	cTc/cCc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244155	153244156	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	82	562	0	ENST00000281708.4:c.2001dup	p.Ser668GlufsTer26	p.S668Efs*26	ENST00000281708	NM_033632.3	667	-/G																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	94	349	2	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589576	67589576	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1289537429		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	19	73	0	ENST00000274335.5:c.1344del	p.Lys448AsnfsTer32	p.K448Nfs*32	ENST00000274335		447	Aaa/aa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	17	250	1	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	49	264	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	28	164	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497299	149497299	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142762235		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	128	756	0	ENST00000261799.4:c.3019G>A	p.Val1007Ile	p.V1007I	ENST00000261799	NM_002609.3	1007	Gtc/Atc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	67	346	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190344	32190344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146490163		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	93	691	2	ENST00000375023.3:c.395G>A	p.Arg132His	p.R132H	ENST00000375023	NM_004557.3	132	cGc/cAc																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36651913	36651914	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	99	669	0	ENST00000244741.5:c.36dup	p.Cys13MetfsTer23	p.C13Mfs*23	ENST00000244741	NM_000389.4	12	cca/ccAa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106554315	106554315	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1400919125		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	87	463	0	ENST00000369096.4:c.1843C>T	p.Leu615Phe	p.L615F	ENST00000369096	NM_001198.3	615	Ctc/Ttc																																																																															
HGF	3082	MSKCC	GRCh37	7	81335047	81335048	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	27	321	0	ENST00000222390.5:c.1779dup	p.Val594CysfsTer2	p.V594Cfs*2	ENST00000222390	NM_000601.4	593	-/T																																																																															
CDK6	1021	MSKCC	GRCh37	7	92355046	92355046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	31	334	0	ENST00000265734.4:c.431G>A	p.Arg144His	p.R144H	ENST00000265734	NM_001259.6	144	cGc/cAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	38	332	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370706	55370706	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	102	582	0	ENST00000297316.4:c.8G>T	p.Ser3Ile	p.S3I	ENST00000297316	NM_022454.3	3	aGc/aTc																																																																															
SYK	6850	MSKCC	GRCh37	9	93606403	93606403	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs570398843		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	133	672	0	ENST00000375746.1:c.223G>A	p.Ala75Thr	p.A75T	ENST00000375746	NM_001174167.1	75	Gcc/Acc																																																																															
ABL1	25	MSKCC	GRCh37	9	133760523	133760523	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	145	851	1	ENST00000318560.5:c.2846G>T	p.Ser949Ile	p.S949I	ENST00000318560	NM_005157.4	949	aGc/aTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399315	139399315	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369467132		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	166	895	0	ENST00000277541.6:c.4828G>A	p.Ala1610Thr	p.A1610T	ENST00000277541	NM_017617.3	1610	Gca/Aca																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841268	15841268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	91	475	0	ENST00000307771.7:c.1352G>A	p.Arg451His	p.R451H	ENST00000307771	NM_005089.3	451	cGc/cAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932958	39932959	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	102	699	0	ENST00000378444.4:c.1640dup	p.Met547IlefsTer10	p.M547Ifs*10	ENST00000378444	NM_001123385.1	547	atg/atTg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426438	47426438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	94	691	2	ENST00000377045.4:c.781G>T	p.Ala261Ser	p.A261S	ENST00000377045	NM_001654.4	261	Gcc/Tcc																																																																															
ATRX	546	MSKCC	GRCh37	X	76937879	76937880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	42	333	0	ENST00000373344.5:c.2868dup	p.Val957SerfsTer7	p.V957Sfs*7	ENST00000373344	NM_000489.3	956	-/A																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0044599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	76	466	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	115	802	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262096	10262096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	127	716	0	ENST00000340748.4:c.2195C>T	p.Ser732Phe	p.S732F	ENST00000340748		732	tCt/tTt																																																																															
CDH1	999	MSKCC	GRCh37	16	68853199	68853200	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	122	579	0	ENST00000261769.5:c.1583dup	p.Asp528GlufsTer9	p.D528Efs*9	ENST00000261769	NM_004360.3	528	gac/gAac																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30309876	30309876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	37	690	0	ENST00000307677.4:c.146G>A	p.Ser49Asn	p.S49N	ENST00000307677	NM_138578.1	49	aGt/aAt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967859	93967859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	99	548	2	ENST00000369303.4:c.2068G>A	p.Asp690Asn	p.D690N	ENST00000369303	NM_004440.3	690	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	93	375	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578245	7578610	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCAAATTTCCTTCCACTCGGATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAA	GCAAATTTCCTTCCACTCGGATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAA	-			P-0044659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	151	714	0	ENST00000269305.4:c.376-56_604del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	54	316	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	84	423	0	ENST00000342988.3:c.1572G>C	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1202793339		P-0044779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	202	559	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
GATA3	2625	MSKCC	GRCh37	10	8100514	8100514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201023943		P-0044779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	107	732	2	ENST00000346208.3:c.488C>T	p.Pro163Leu	p.P163L	ENST00000346208		163	cCg/cTg																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158588	26158588	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1415465556		P-0044779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	69	417	0	ENST00000289316.2:c.191A>G	p.Asn64Ser	p.N64S	ENST00000289316	NM_138720.2	64	aAt/aGt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	106	312	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	141	480	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	355	622	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209721	98209721	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749244396		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	146	647	0	ENST00000331920.6:c.3817G>A	p.Glu1273Lys	p.E1273K	ENST00000331920	NM_000264.3	1273	Gaa/Aaa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	379	673	8	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs750808726		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	150	745	2	ENST00000261937.6:c.1267dup	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128044348	128044348	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913047		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	158	550	0	ENST00000285398.2:c.1273C>T	p.Arg425Ter	p.R425*	ENST00000285398	NM_000122.1	425	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	148	503	5	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521103	187521103	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs183364307		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	144	421	1	ENST00000441802.2:c.12052G>A	p.Ala4018Thr	p.A4018T	ENST00000441802	NM_005245.3	4018	Gcc/Acc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs758630849		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	112	451	0	ENST00000305921.3:c.1349del	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	100	297	3	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	128	471	1	ENST00000268489.5:c.5677_5678del	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260058	19260058	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143400241		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	194	647	3	ENST00000162023.5:c.235C>T	p.Arg79Cys	p.R79C	ENST00000162023		79	Cgc/Tgc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120258	70120259	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	210	540	1	ENST00000245479.2:c.1261dup	p.Ser421LysfsTer157	p.S421Kfs*157	ENST00000245479	NM_000346.3	420	-/A																																																																															
TET2	54790	MSKCC	GRCh37	4	106155779	106155779	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	96	377	0	ENST00000380013.4:c.685del	p.Thr229HisfsTer21	p.T229Hfs*21	ENST00000380013	NM_001127208.2	227	gAa/ga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105676	27105678	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs760362729		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	89	319	0	ENST00000324856.7:c.5299_5301del	p.Glu1767del	p.E1767del	ENST00000324856	NM_006015.4	1763	GAA/-																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346220	152346220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	141	459	5	ENST00000359321.1:c.350del	p.Leu117TrpfsTer17	p.L117Wfs*17	ENST00000359321	NM_005431.1	117	tTg/tg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686961	37686962	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	123	468	0	ENST00000447079.4:c.3871dup	p.Gln1291ProfsTer19	p.Q1291Pfs*19	ENST00000447079	NM_015083.1	1289	gcc/gCcc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288788	15288789	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	52	99	0	ENST00000263388.2:c.3950dup	p.Gly1318ArgfsTer245	p.G1318Rfs*245	ENST00000263388	NM_000435.2	1317	cca/ccCa																																																																															
MSI1	4440	MSKCC	GRCh37	12	120794732	120794732	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1276733276		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	205	669	1	ENST00000257552.2:c.625G>A	p.Ala209Thr	p.A209T	ENST00000257552	NM_002442.3	209	Gcc/Acc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	262	426	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880988	37880988	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772054394		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	205	655	0	ENST00000269571.5:c.2317G>A	p.Val773Met	p.V773M	ENST00000269571		773	Gtg/Atg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913836	32913837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	80	364	3	ENST00000380152.3:c.5351dup	p.Asn1784LysfsTer3	p.N1784Kfs*3	ENST00000380152		1782	caa/cAaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971039	21971039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	169	381	0	ENST00000304494.5:c.319C>T	p.Arg107Cys	p.R107C	ENST00000304494	NM_000077.4	107	Cgc/Tgc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	162	493	3	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38184289	38184289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149768452		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	93	436	1	ENST00000317025.8:c.1667C>T	p.Thr556Met	p.T556M	ENST00000317025	NM_023034.1	556	aCg/aTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819239	3819239	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772991403		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	154	472	2	ENST00000262367.5:c.2996C>T	p.Thr999Met	p.T999M	ENST00000262367	NM_004380.2	999	aCg/aTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5240233	5240233	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202189767		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	199	685	0	ENST00000357368.4:c.1681C>T	p.Arg561Trp	p.R561W	ENST00000357368	NM_002850.3	561	Cgg/Tgg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022747	12022747	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376242225		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	115	456	1	ENST00000396373.4:c.853G>A	p.Val285Met	p.V285M	ENST00000396373	NM_001987.4	285	Gtg/Atg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300039	137300040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755912201		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	175	681	5	ENST00000481739.1:c.331dup	p.Leu111ProfsTer70	p.L111Pfs*70	ENST00000481739	NM_002957.4	108	-/C																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851274	156851274	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	185	686	0	ENST00000524377.1:c.2231G>C	p.Arg744Pro	p.R744P	ENST00000524377	NM_002529.3	744	cGt/cCt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430228	181430228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	138	358	0	ENST00000325404.1:c.80C>T	p.Ala27Val	p.A27V	ENST00000325404	NM_003106.3	27	gCg/gTg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39002716	39002716	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	112	288	1	ENST00000357387.3:c.313C>T	p.Arg105Ter	p.R105*	ENST00000357387	NM_152756.3	105	Cga/Tga																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797891	45797891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199840380		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	184	676	0	ENST00000372115.3:c.838C>T	p.Arg280Cys	p.R280C	ENST00000372115	NM_001048171.1	280	Cgc/Tgc																																																																															
TEK	7010	MSKCC	GRCh37	9	27169499	27169499	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs573385848		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	114	392	0	ENST00000380036.4:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000380036	NM_000459.3	167	cGg/cAg																																																																															
PARP1	142	MSKCC	GRCh37	1	226555267	226555267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	139	430	0	ENST00000366794.5:c.2320G>A	p.Ala774Thr	p.A774T	ENST00000366794	NM_001618.3	774	Gcc/Acc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522532	67522532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767837787		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	70	168	0	ENST00000274335.5:c.29C>T	p.Ala10Val	p.A10V	ENST00000274335		10	gCg/gTg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664771	138664771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	86	179	1	ENST00000330315.3:c.794C>T	p.Ala265Val	p.A265V	ENST00000330315	NM_023067.3	265	gCg/gTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244190	5244190	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760369713		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	207	709	0	ENST00000357368.4:c.1292G>A	p.Arg431Gln	p.R431Q	ENST00000357368	NM_002850.3	431	cGg/cAg																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551958	150551958	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs932863734		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	152	447	1	ENST00000369026.2:c.49G>A	p.Gly17Arg	p.G17R	ENST00000369026	NM_021960.4	17	Ggg/Agg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982113	201982113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751933012		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	184	623	0	ENST00000359651.3:c.637G>A	p.Gly213Ser	p.G213S	ENST00000359651		213	Ggt/Agt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942606	71942606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769074650		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	156	553	0	ENST00000298229.2:c.1562G>A	p.Arg521His	p.R521H	ENST00000298229	NM_001567.3	521	cGt/cAt																																																																															
PGR	5241	MSKCC	GRCh37	11	100920719	100920719	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	79	361	0	ENST00000325455.5:c.2429A>G	p.Lys810Arg	p.K810R	ENST00000325455	NM_001202474.3	810	aAg/aGg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285675	46285675	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1201192337		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	45	306	0	ENST00000334344.6:c.5035C>T	p.Arg1679Trp	p.R1679W	ENST00000334344	NM_152641.2	1679	Cgg/Tgg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856326	111856326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	19	59	1	ENST00000341259.2:c.377C>T	p.Pro126Leu	p.P126L	ENST00000341259	NM_005475.2	126	cCg/cTg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562948	21562948	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	200	626	0	ENST00000382592.4:c.971del	p.Ala324GlyfsTer109	p.A324Gfs*109	ENST00000382592	NM_014572.2	324	gCg/gg																																																																															
RB1	5925	MSKCC	GRCh37	13	49039197	49039198	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCTTCA			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	121	418	0	ENST00000267163.4:c.2277_2282dup	p.Phe760_Met761insIlePhe	p.F760_M761insIF	ENST00000267163	NM_000321.2	759	gtc/gTCTTCAtc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423638	88423638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	99	339	0	ENST00000360948.2:c.2197C>A	p.Pro733Thr	p.P733T	ENST00000360948	NM_001012338.2	733	Ccc/Acc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134690	2134691	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	383	681	0	ENST00000219476.3:c.4470_4471del	p.Lys1491SerfsTer32	p.K1491Sfs*32	ENST00000219476	NM_000548.3	1489	gcAGag/gcag																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14020487	14020487	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913050		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	93	367	0	ENST00000311895.7:c.458G>A	p.Arg153His	p.R153H	ENST00000311895	NM_005236.2	153	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821368	72821368	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1458446159		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	82	261	0	ENST00000268489.5:c.10807G>A	p.Ala3603Thr	p.A3603T	ENST00000268489	NM_006885.3	3603	Gcc/Acc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17118551	17118552	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-	rs1064793128		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	159	605	0	ENST00000285071.4:c.1379_1380del	p.Leu460GlnfsTer25	p.L460Qfs*25	ENST00000285071	NM_144997.5	460	cTC/c																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216310	2216310	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780465036		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	168	566	1	ENST00000398665.3:c.1954C>T	p.Arg652Trp	p.R652W	ENST00000398665	NM_032482.2	652	Cgg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231461	5231461	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	198	636	0	ENST00000357368.4:c.2015A>G	p.Asn672Ser	p.N672S	ENST00000357368	NM_002850.3	672	aAc/aGc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289889	15289889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	222	756	0	ENST00000263388.2:c.3665G>A	p.Cys1222Tyr	p.C1222Y	ENST00000263388	NM_000435.2	1222	tGc/tAc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918193	50918194	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	184	717	0	ENST00000440232.2:c.2515dup	p.Leu839ProfsTer20	p.L839Pfs*20	ENST00000440232	NM_002691.3	837	tgc/tgCc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31374318	31374318	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	124	558	1	ENST00000328111.2:c.317G>T	p.Arg106Leu	p.R106L	ENST00000328111	NM_006892.3	106	cGa/cTa																																																																															
ATR	545	MSKCC	GRCh37	3	142279201	142279201	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	100	351	1	ENST00000350721.4:c.1445T>C	p.Leu482Pro	p.L482P	ENST00000350721	NM_001184.3	482	cTa/cCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951992	178951992	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	190	373	0	ENST00000263967.3:c.3047T>C	p.Phe1016Ser	p.F1016S	ENST00000263967	NM_006218.2	1016	tTt/tCt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562867	176562867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	147	430	0	ENST00000439151.2:c.763C>T	p.Pro255Ser	p.P255S	ENST00000439151	NM_022455.4	255	Cca/Tca																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323351	31323351	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	79	250	0	ENST00000412585.2:c.638T>C	p.Val213Ala	p.V213A	ENST00000412585	NM_005514.6	213	gTg/gCg																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43748570	43748570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	146	379	0	ENST00000523873.1:c.524C>A	p.Pro175His	p.P175H	ENST00000523873		175	cCc/cAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509318	106509318	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs772698550		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	156	504	0	ENST00000359195.3:c.1312G>T	p.Ala438Ser	p.A438S	ENST00000359195	NM_002649.2	438	Gct/Tct																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1325439	1325439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1391352722		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	130	452	0	ENST00000381566.1:c.236G>A	p.Gly79Asp	p.G79D	ENST00000381566		79	gGt/gAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133245277	133245277	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	149	756	0	ENST00000320574.5:c.1970A>C	p.Asn657Thr	p.N657T	ENST00000320574	NM_006231.2	657	aAt/aCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	68	359	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0044832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	219	689	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281250	15281250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1184522923		P-0044832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	287	999	1	ENST00000263388.2:c.5006G>A	p.Arg1669His	p.R1669H	ENST00000263388	NM_000435.2	1669	cGc/cAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602836	10602836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	282	869	0	ENST00000171111.5:c.742G>A	p.Ala248Thr	p.A248T	ENST00000171111	NM_203500.1	248	Gcc/Acc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3824594	3824594	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1389560620		P-0044832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	60	524	0	ENST00000262367.5:c.2259G>A	p.Met753Ile	p.M753I	ENST00000262367	NM_004380.2	753	atG/atA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099467	27099467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	42	348	0	ENST00000324856.7:c.3704G>A	p.Ser1235Asn	p.S1235N	ENST00000324856	NM_006015.4	1235	aGc/aAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101417	27101417	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	263	491	0	ENST00000324856.7:c.4703del	p.Pro1568LeufsTer44	p.P1568Lfs*44	ENST00000324856	NM_006015.4	1567	Ccc/cc																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599234	28599234	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1198	84	754	2	ENST00000253063.3:c.685del	p.Gln229ArgfsTer18	p.Q229Rfs*18	ENST00000253063	NM_031459.4	227	gCc/gc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs769210858		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	305	734	1	ENST00000361632.4:c.1404del	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	162	398	0	ENST00000262741.5:c.883del	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468106	120468106	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	126	692	0	ENST00000256646.2:c.4333A>C	p.Ser1445Arg	p.S1445R	ENST00000256646	NM_024408.3	1445	Agc/Cgc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	318	425	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129344	64129344	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs756803659		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	287	743	0	ENST00000334205.4:c.776C>A	p.Pro259His	p.P259H	ENST00000334205	NM_003942.2	259	cCt/cAt																																																																															
EED	8726	MSKCC	GRCh37	11	85961474	85961474	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1402767573		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	74	174	0	ENST00000263360.6:c.251G>A	p.Cys84Tyr	p.C84Y	ENST00000263360	NM_003797.3	84	tGt/tAt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94197308	94197308	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	157	337	0	ENST00000323929.3:c.1196del	p.Phe399SerfsTer29	p.F399Sfs*29	ENST00000323929	NM_005591.3	399	tTc/tc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344558	118344558	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs200600434		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	43	372	1	ENST00000534358.1:c.2684A>G	p.Lys895Arg	p.K895R	ENST00000534358	NM_005933.3	895	aAg/aGg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118368661	118368661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	92	280	0	ENST00000534358.1:c.5675G>A	p.Arg1892His	p.R1892H	ENST00000534358	NM_005933.3	1892	cGt/cAt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	138	433	4	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427743	49427743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	247	622	1	ENST00000301067.7:c.10745G>A	p.Arg3582Gln	p.R3582Q	ENST00000301067	NM_003482.3	3582	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445257	49445257	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1328	74	859	5	ENST00000301067.7:c.2209del	p.Arg737GlyfsTer193	p.R737Gfs*193	ENST00000301067	NM_003482.3	737	Cgg/gg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	195	758	6	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856155	111856155	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1170508105		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	159	524	0	ENST00000341259.2:c.206A>G	p.Asp69Gly	p.D69G	ENST00000341259	NM_005475.2	69	gAc/gGc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856196	111856196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	137	379	1	ENST00000341259.2:c.247C>T	p.Arg83Trp	p.R83W	ENST00000341259	NM_005475.2	83	Cgg/Tgg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115385	115115386	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	73	386	1	ENST00000257566.3:c.940dup	p.Arg314LysfsTer13	p.R314Kfs*13	ENST00000257566	NM_016569.3	314	aga/aAga																																																																															
CDK8	1024	MSKCC	GRCh37	13	26975687	26975687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	148	384	0	ENST00000381527.3:c.1195C>T	p.Pro399Ser	p.P399S	ENST00000381527	NM_001260.1	399	Ccc/Tcc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012358	29012359	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	154	367	0	ENST00000282397.4:c.512dup	p.Phe172ValfsTer4	p.F172Vfs*4	ENST00000282397	NM_002019.4	171	aag/aaAg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	138	370	1	ENST00000380152.3:c.5351del	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610503	81610503	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137908024		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	118	408	0	ENST00000298171.2:c.2101C>T	p.Arg701Cys	p.R701C	ENST00000298171	NM_000369.2	701	Cgc/Tgc																																																																															
GREM1	26585	MSKCC	GRCh37	15	33022990	33022990	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	110	491	0	ENST00000300177.4:c.104del	p.Pro35ArgfsTer49	p.P35Rfs*49	ENST00000300177	NM_001191322.1	33	atC/at																																																																															
MGA	23269	MSKCC	GRCh37	15	42040841	42040841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	145	366	0	ENST00000219905.7:c.5219C>T	p.Ala1740Val	p.A1740V	ENST00000219905	NM_001164273.1	1740	gCt/gTt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43773126	43773126	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	49	549	0	ENST00000382044.4:c.466T>C	p.Ser156Pro	p.S156P	ENST00000382044	NM_001141980.1	156	Tca/Cca																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420192	88420192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	166	441	0	ENST00000360948.2:c.2494C>T	p.Pro832Ser	p.P832S	ENST00000360948	NM_001012338.2	832	Cca/Tca																																																																															
BLM	641	MSKCC	GRCh37	15	91347484	91347484	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	144	469	1	ENST00000355112.3:c.3651del	p.Lys1217AsnfsTer62	p.K1217Nfs*62	ENST00000355112	NM_000057.2	1216	Aaa/aa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900369	3900369	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs762902238		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	261	622	2	ENST00000262367.5:c.727C>A	p.Leu243Ile	p.L243I	ENST00000262367	NM_004380.2	243	Cta/Ata																																																																															
NUP93	9688	MSKCC	GRCh37	16	56865869	56865869	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761782738		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	125	347	1	ENST00000308159.5:c.1201G>A	p.Asp401Asn	p.D401N	ENST00000308159	NM_014669.4	401	Gac/Aac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	137	418	2	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	256	662	2	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110166	8110166	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148133660		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	236	596	0	ENST00000585124.1:c.439C>T	p.Arg147Trp	p.R147W	ENST00000585124	NM_004217.3	147	Cgg/Tgg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	176	601	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682428	37682428	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	185	429	0	ENST00000447079.4:c.3619C>T	p.Gln1207Ter	p.Q1207*	ENST00000447079	NM_015083.1	1207	Cag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37864757	37864757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	52	499	0	ENST00000269571.5:c.409C>A	p.Leu137Met	p.L137M	ENST00000269571		137	Ctg/Atg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	283	752	2	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	194	552	2	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761414	59761417	+	frameshift_variant	Frame_Shift_Del	DEL	TTTG	TTTG	-	rs771028677		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	104	409	0	ENST00000259008.2:c.2990_2993del	p.Thr997ArgfsTer61	p.T997Rfs*61	ENST00000259008	NM_032043.2	997	aCAAAg/ag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	344	892	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56376681	56376681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	181	433	0	ENST00000348428.3:c.721G>T	p.Gly241Cys	p.G241C	ENST00000348428	NM_006785.3	241	Ggc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222772	5222772	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs770446171		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	259	783	0	ENST00000357368.4:c.3031C>T	p.Arg1011Ter	p.R1011*	ENST00000357368	NM_002850.3	1011	Cga/Tga																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627687	14627687	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	213	604	0	ENST00000254322.2:c.383A>C	p.Asp128Ala	p.D128A	ENST00000254322	NM_006145.1	128	gAt/gCt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15278138	15278138	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756495084		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	288	809	0	ENST00000263388.2:c.5284G>A	p.Val1762Met	p.V1762M	ENST00000263388	NM_000435.2	1762	Gtg/Atg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288710	15288710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	23	57	0	ENST00000263388.2:c.4029del	p.Cys1344ValfsTer76	p.C1344Vfs*76	ENST00000263388	NM_000435.2	1343	ccC/cc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355060	15355060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199540579		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	357	868	1	ENST00000263377.2:c.2563G>A	p.Ala855Thr	p.A855T	ENST00000263377	NM_058243.2	855	Gca/Aca																																																																															
JAK3	3718	MSKCC	GRCh37	19	17950457	17950457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	291	665	0	ENST00000458235.1:c.1270G>T	p.Asp424Tyr	p.D424Y	ENST00000458235	NM_000215.3	424	Gat/Tat																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953977	17953977	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs964736085		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	297	811	0	ENST00000458235.1:c.425G>A	p.Arg142His	p.R142H	ENST00000458235	NM_000215.3	142	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214871	36214871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	276	700	5	ENST00000222270.7:c.3302del	p.Pro1101LeufsTer81	p.P1101Lfs*81	ENST00000222270	NM_014727.1	1099	ggC/gg																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	323	832	5	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
CD79A	973	MSKCC	GRCh37	19	42385003	42385003	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	277	697	0	ENST00000221972.3:c.637G>T	p.Val213Leu	p.V213L	ENST00000221972	NM_021601.3	213	Gtg/Ttg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906393	50906393	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762330164		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	309	838	1	ENST00000440232.2:c.1054C>T	p.Arg352Cys	p.R352C	ENST00000440232	NM_002691.3	352	Cgc/Tgc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716301	52716301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	261	672	2	ENST00000322088.6:c.745C>T	p.Arg249Cys	p.R249C	ENST00000322088	NM_014225.5	249	Cgc/Tgc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605795	46605795	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	158	446	2	ENST00000263734.3:c.1444-1G>A		p.X482_splice	ENST00000263734	NM_001430.4	482																																																																																
ERCC3	2071	MSKCC	GRCh37	2	128046415	128046415	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749390618		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	124	328	0	ENST00000285398.2:c.848G>A	p.Arg283His	p.R283H	ENST00000285398	NM_000122.1	283	cGt/cAt																																																																															
PMS1	5378	MSKCC	GRCh37	2	190682809	190682810	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1275949235		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	34	317	0	ENST00000441310.2:c.492dup	p.Cys165MetfsTer2	p.C165Mfs*2	ENST00000441310	NM_000534.4	162	gca/gcAa																																																																															
CASP8	841	MSKCC	GRCh37	2	202150013	202150013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	52	477	1	ENST00000358485.4:c.1454G>A	p.Cys485Tyr	p.C485Y	ENST00000358485	NM_001080125.1	485	tGc/tAc																																																																															
INHA	3623	MSKCC	GRCh37	2	220437222	220437223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1286117855		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1346	88	992	1	ENST00000243786.2:c.132dup	p.Ala45ArgfsTer29	p.A45Rfs*29	ENST00000243786	NM_002191.3	42	-/C																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793431	242793431	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376257658		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	232	626	0	ENST00000334409.5:c.646G>A	p.Val216Met	p.V216M	ENST00000334409	NM_005018.2	216	Gtg/Atg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560955	9560955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	168	425	0	ENST00000353224.5:c.827C>T	p.Thr276Ile	p.T276I	ENST00000353224	NM_177990.2	276	aCa/aTa																																																																															
TOP1	7150	MSKCC	GRCh37	20	39708808	39708808	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183058581		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	37	206	0	ENST00000361337.2:c.419G>A	p.Arg140Gln	p.R140Q	ENST00000361337	NM_003286.2	140	cGa/cAa																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961495	54961495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769961096		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	161	470	0	ENST00000312783.6:c.137G>A	p.Arg46Gln	p.R46Q	ENST00000312783	NM_198436.1	46	cGg/cAg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485851	57485851	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	152	407	0	ENST00000371085.3:c.1152G>T	p.Gln384His	p.Q384H	ENST00000371085	NM_000516.4	384	caG/caT																																																																															
EP300	2033	MSKCC	GRCh37	22	41527572	41527572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	64	420	0	ENST00000263253.7:c.1463C>T	p.Ala488Val	p.A488V	ENST00000263253	NM_001429.3	488	gCa/gTa																																																																															
EP300	2033	MSKCC	GRCh37	22	41548281	41548281	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	112	290	0	ENST00000263253.7:c.3072del	p.Glu1025ArgfsTer34	p.E1025Rfs*34	ENST00000263253	NM_001429.3	1023	atA/at																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391168	89391168	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772463834		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	153	438	0	ENST00000336596.2:c.1234G>A	p.Val412Ile	p.V412I	ENST00000336596	NM_005233.5	412	Gtt/Att																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851574	134851574	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747682274		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	166	441	0	ENST00000398015.3:c.980G>A	p.Arg327His	p.R327H	ENST00000398015	NM_004441.4	327	cGc/cAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134898710	134898710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	86	264	1	ENST00000398015.3:c.1768G>T	p.Gly590Trp	p.G590W	ENST00000398015	NM_004441.4	590	Ggg/Tgg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664989	138664989	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	24	278	0	ENST00000330315.3:c.576del	p.Lys193SerfsTer78	p.K193Sfs*78	ENST00000330315	NM_023067.3	192	ccC/cc																																																																															
ATR	545	MSKCC	GRCh37	3	142261554	142261555	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1043355995		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	105	294	0	ENST00000350721.4:c.3402dup	p.Asn1135Ter	p.N1135*	ENST00000350721	NM_001184.3	1134	-/T																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519841		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	97	283	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																															
MSH3	4437	MSKCC	GRCh37	5	79966007	79966007	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772141055		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	148	450	0	ENST00000265081.6:c.671G>A	p.Arg224Gln	p.R224Q	ENST00000265081	NM_002439.4	224	cGg/cAg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	359	462	0	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112170762	112170765	+	frameshift_variant	Frame_Shift_Del	DEL	CTTA	CTTA	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	188	545	0	ENST00000257430.4:c.1863_1866del	p.Tyr622GlyfsTer7	p.Y622Gfs*7	ENST00000257430	NM_000038.5	620	CTTAct/ct																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	105	317	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512344	149512344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368602685		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	231	678	1	ENST00000261799.4:c.1096G>A	p.Ala366Thr	p.A366T	ENST00000261799	NM_002609.3	366	Gcc/Acc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048881	180048881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751002839		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	304	897	2	ENST00000261937.6:c.1681G>A	p.Glu561Lys	p.E561K	ENST00000261937	NM_182925.4	561	Gaa/Aaa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056566	26056566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1444425351		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	102	318	0	ENST00000343677.2:c.91A>G	p.Thr31Ala	p.T31A	ENST00000343677	NM_005319.3	31	Acg/Gcg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910570	29910574	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGG	CCCGG	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	160	332	0	ENST00000376809.5:c.117_121del	p.Gly40ArgfsTer57	p.G40Rfs*57	ENST00000376809	NM_002116.7	37	tCCCGG/t																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672551	30672551	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773270002		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	186	548	0	ENST00000376406.3:c.4409C>T	p.Thr1470Met	p.T1470M	ENST00000376406	NM_014641.2	1470	aCg/aTg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	330	444	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188294	32188295	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs766348245		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	264	768	3	ENST00000375023.3:c.1046dup	p.Thr350HisfsTer4	p.T350Hfs*4	ENST00000375023	NM_004557.3	349	ggc/ggGc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405960	157405960	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	181	533	0	ENST00000346085.5:c.2204del	p.Pro735HisfsTer10	p.P735Hfs*10	ENST00000346085	NM_020732.3	734	ggC/gg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259460	55259460	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143884981		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	181	536	0	ENST00000275493.2:c.2518G>A	p.Ala840Thr	p.A840T	ENST00000275493	NM_005228.3	840	Gcc/Acc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874914	151874914	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	41	338	0	ENST00000262189.6:c.7624del	p.Ser2542HisfsTer20	p.S2542Hfs*20	ENST00000262189	NM_170606.2	2542	Tca/ca																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38139101	38139101	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	130	316	0	ENST00000317025.8:c.3502G>T	p.Gly1168Cys	p.G1168C	ENST00000317025	NM_023034.1	1168	Ggt/Tgt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205092	38205092	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	122	480	1	ENST00000317025.8:c.598del	p.Ser200AlafsTer20	p.S200Afs*20	ENST00000317025	NM_023034.1	200	Agc/gc																																																																															
NBN	4683	MSKCC	GRCh37	8	90958480	90958480	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	61	300	1	ENST00000265433.3:c.1958del	p.Lys653SerfsTer4	p.K653Sfs*4	ENST00000265433	NM_002485.4	653	aAg/ag																																																																															
FANCC	2176	MSKCC	GRCh37	9	97864086	97864086	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	116	483	1	ENST00000289081.3:c.1580A>G	p.Asp527Gly	p.D527G	ENST00000289081	NM_000136.2	527	gAc/gGc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250050	110250050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	295	794	0	ENST00000374672.4:c.625G>A	p.Asp209Asn	p.D209N	ENST00000374672	NM_004235.4	209	Gac/Aac																																																																															
ABL1	25	MSKCC	GRCh37	9	133759526	133759526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773475680		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	277	680	1	ENST00000318560.5:c.1849C>T	p.Arg617Cys	p.R617C	ENST00000318560	NM_005157.4	617	Cgc/Tgc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405225	139405225	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776698364		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	332	873	1	ENST00000277541.6:c.2620G>A	p.Val874Ile	p.V874I	ENST00000277541	NM_017617.3	874	Gtt/Att																																																																															
ARAF	369	MSKCC	GRCh37	X	47429012	47429012	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754787460		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	252	713	0	ENST00000377045.4:c.1375G>A	p.Gly459Arg	p.G459R	ENST00000377045	NM_001654.4	459	Ggg/Agg																																																																															
MED12	9968	MSKCC	GRCh37	X	70345231	70345231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	210	581	2	ENST00000374080.3:c.2257C>T	p.Arg753Trp	p.R753W	ENST00000374080		753	Cgg/Tgg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197725	123197725	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749851312		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	112	354	1	ENST00000218089.9:c.1849C>T	p.Arg617Trp	p.R617W	ENST00000218089	NM_001042749.1	617	Cgg/Tgg																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858192	152858192	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	303	833	0	ENST00000406277.2:c.424-1G>A		p.X142_splice	ENST00000406277	NM_152274.4	142																																																																																
LATS2	26524	MSKCC	GRCh37	13	21562487	21562487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	53	136	0	ENST00000382592.4:c.1432G>A	p.Ala478Thr	p.A478T	ENST00000382592	NM_014572.2	478	Gcc/Acc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	793	611	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
POLE	5426	MSKCC	GRCh37	12	133201554	133201556	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs878854896		P-0044859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	410	798	1	ENST00000320574.5:c.6682_6684del	p.Lys2228del	p.K2228del	ENST00000320574	NM_006231.2	2228	AAG/-																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45795096	45795096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	282	562	0	ENST00000372115.3:c.1490C>A	p.Ser497Tyr	p.S497Y	ENST00000372115	NM_001048171.1	497	tCc/tAc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30315498	30315507	+	frameshift_variant	Frame_Shift_Del	DEL	AAACCTACTC	AAACCTACTC	-			P-0044859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	210	363	0	ENST00000322652.5:c.1187_1196del	p.Pro396LeufsTer8	p.P396Lfs*8	ENST00000322652	NM_015355.2	395	AAACCTACTCaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	34	211	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574010	7574026	+	frameshift_variant	Frame_Shift_Del	DEL	CTCGAAGCGCTCACGCC	CTCGAAGCGCTCACGCC	-			P-0044903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	125	701	0	ENST00000269305.4:c.1001_1017del	p.Gly334AspfsTer7	p.G334Dfs*7	ENST00000269305	NM_001126112.2	334	gGGCGTGAGCGCTTCGAG/g																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120399	70120400	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0044903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	227	1029	0	ENST00000245479.2:c.1401_1402del	p.Tyr468HisfsTer109	p.Y468Hfs*109	ENST00000245479	NM_000346.3	467	acCTac/acac																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266828	41266828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	55	289	0	ENST00000349496.5:c.499G>A	p.Val167Met	p.V167M	ENST00000349496	NM_001904.3	167	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0044918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	554	768	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0044918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	797	646	0	ENST00000397752.3:c.3028+1G>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11137023	11137023	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0044918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	340	631	0	ENST00000344626.4:c.3215+1G>C		p.X1072_splice	ENST00000344626	NM_003072.3	1072																																																																																
BARD1	580	MSKCC	GRCh37	2	215645796	215645796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	301	427	0	ENST00000260947.4:c.802G>A	p.Glu268Lys	p.E268K	ENST00000260947	NM_000465.2	268	Gaa/Aaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266483	41266483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	248	354	0	ENST00000349496.5:c.280G>T	p.Val94Leu	p.V94L	ENST00000349496	NM_001904.3	94	Gta/Tta																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965481	68965481	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0044918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	115	575	0	ENST00000288368.4:c.1093G>C	p.Gly365Arg	p.G365R	ENST00000288368	NM_024870.2	365	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974711	21975575	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	TTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCTCTGGTGACCAGCCAGCCCCTCCTCTTTCTTCCTCCGGTGCTGGCGGAAGAGCCCCCTCCGACCCTGTCCCTCAAATCCTCTGGAGGGACCGCGGTATCTTTCCAGGCAAGGGGACGCCGTGAGCGAGTGCTCGGAGGAGGTGCTATTAACTCCGAGCACTTAGCGAATGTGGCACCCCTGAAGTCGCCCCAGGTTGGGTCTCCCCCGGGGGCACCAGCCGGAAGCAGCCCTCGCCAGAGCCAGCGTTGGCAAGGAAGGAGGACTGGGCTCCTCCCCACCTGCCCCCCACACCGCCCTCCGGCCTCCCTGCTCCCAGCCGCGCTCCCCCGCCTGCCAGCAAAGGCGTGTTTGAGTGCGTTCACTCTGTTAAAAAGAAATCCGCCCCCGCCCCGTTTCCTTCCTCCGCGATACAACCTTCCTAACTGCCAAATTGAATCGGGGTGTTTGGTGTCATAGGGAAAGTATGGCTTCTTCTTTTAATCATAAGAAAAAGCAAAACTATTCTTTCCTAGTTGTGAGAGCCCCACCGAGAATCGAAATCACCTGTACGACTAGAAAGTGTCCCCCTACCCCCTCAACCCTTGATTTTCAGGAGCGCGGGGTTCACTAAGTCAGAAACCCTAGTTCAAAGGATTCCTTTTGGAGAGTCGGACTGCTCTCTCCTTCCCCTCCCCTT	TTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCTCTGGTGACCAGCCAGCCCCTCCTCTTTCTTCCTCCGGTGCTGGCGGAAGAGCCCCCTCCGACCCTGTCCCTCAAATCCTCTGGAGGGACCGCGGTATCTTTCCAGGCAAGGGGACGCCGTGAGCGAGTGCTCGGAGGAGGTGCTATTAACTCCGAGCACTTAGCGAATGTGGCACCCCTGAAGTCGCCCCAGGTTGGGTCTCCCCCGGGGGCACCAGCCGGAAGCAGCCCTCGCCAGAGCCAGCGTTGGCAAGGAAGGAGGACTGGGCTCCTCCCCACCTGCCCCCCACACCGCCCTCCGGCCTCCCTGCTCCCAGCCGCGCTCCCCCGCCTGCCAGCAAAGGCGTGTTTGAGTGCGTTCACTCTGTTAAAAAGAAATCCGCCCCCGCCCCGTTTCCTTCCTCCGCGATACAACCTTCCTAACTGCCAAATTGAATCGGGGTGTTTGGTGTCATAGGGAAAGTATGGCTTCTTCTTTTAATCATAAGAAAAAGCAAAACTATTCTTTCCTAGTTGTGAGAGCCCCACCGAGAATCGAAATCACCTGTACGACTAGAAAGTGTCCCCCTACCCCCTCAACCCTTGATTTTCAGGAGCGCGGGGTTCACTAAGTCAGAAACCCTAGTTCAAAGGATTCCTTTTGGAGAGTCGGACTGCTCTCTCCTTCCCCTCCCCTT	-			P-0044918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	220	341	0				ENST00000304494	NM_000077.4			3-Jan																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	257	298	4	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55266503	55266503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	204	516	12	ENST00000275493.2:c.2795G>A	p.Arg932His	p.R932H	ENST00000275493	NM_005228.3	932	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	114	282	0	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112128142	112128142	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0044990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	65	246	2	ENST00000257430.4:c.646-1G>A		p.X216_splice	ENST00000257430	NM_000038.5	216																																																																																
APC	324	MSKCC	GRCh37	5	112174268	112174268	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0044990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	142	264	2	ENST00000257430.4:c.2977A>T	p.Lys993Ter	p.K993*	ENST00000257430	NM_000038.5	993	Aag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0044990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	532	598	10	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114920450	114920450	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0044990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	398	357	3	ENST00000543371.1:c.1391G>A	p.Arg464Lys	p.R464K	ENST00000543371	NM_001198531.1	464	aGg/aAg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468092	120468092	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	212	595	0	ENST00000256646.2:c.4347G>C	p.Gln1449His	p.Q1449H	ENST00000256646	NM_024408.3	1449	caG/caC																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609646	81609646	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	200	508	1	ENST00000298171.2:c.1244A>T	p.Lys415Met	p.K415M	ENST00000298171	NM_000369.2	415	aAg/aTg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777063	9777063	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	188	674	0	ENST00000377346.4:c.827T>C	p.Met276Thr	p.M276T	ENST00000377346	NM_005026.3	276	aTg/aCg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	145	594	2	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	205	413	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120461166	120461166	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200693165		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	141	364	0	ENST00000256646.2:c.5792G>A	p.Arg1931His	p.R1931H	ENST00000256646	NM_024408.3	1931	cGc/cAc																																																																															
RET	5979	MSKCC	GRCh37	10	43617431	43617431	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	170	435	2	ENST00000355710.3:c.2772del	p.Phe924LeufsTer22	p.F924Lfs*22	ENST00000355710	NM_020975.4	923	cTt/ct																																																																															
TET1	80312	MSKCC	GRCh37	10	70332459	70332459	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751344073		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	196	633	2	ENST00000373644.4:c.364G>A	p.Val122Ile	p.V122I	ENST00000373644	NM_030625.2	122	Gta/Ata																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88635807	88635807	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	115	366	0	ENST00000372037.3:c.32T>C	p.Leu11Ser	p.L11S	ENST00000372037	NM_004329.2	11	tTg/tCg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	190	499	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913294		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	137	503	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742476	17742476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	196	735	1	ENST00000250003.3:c.658G>A	p.Ala220Thr	p.A220T	ENST00000250003	NM_002478.4	220	Gcc/Acc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575119	64575119	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	98	598	0	ENST00000337652.1:c.703T>G	p.Cys235Gly	p.C235G	ENST00000337652	NM_130803.2	235	Tgt/Ggt																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589791	69589791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	77	89	0	ENST00000168712.1:c.62C>T	p.Ala21Val	p.A21V	ENST00000168712	NM_002007.2	21	gCg/gTg																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981720	101981721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	59	297	0	ENST00000282441.5:c.147dup	p.Ala50ArgfsTer62	p.A50Rfs*62	ENST00000282441	NM_001130145.2	47	-/C																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195514	102195514	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	246	436	0	ENST00000263464.3:c.274A>G	p.Ser92Gly	p.S92G	ENST00000263464	NM_001165.4	92	Agc/Ggc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641498	18641498	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	119	380	0	ENST00000266497.5:c.2497A>G	p.Lys833Glu	p.K833E	ENST00000266497		833	Aaa/Gaa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245702	46245702	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	135	487	0	ENST00000334344.6:c.3796A>G	p.Met1266Val	p.M1266V	ENST00000334344	NM_152641.2	1266	Atg/Gtg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287417	46287417	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	115	314	1	ENST00000334344.6:c.5280del	p.Glu1761ArgfsTer4	p.E1761Rfs*4	ENST00000334344	NM_152641.2	1759	gAa/ga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426973	49426973	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	53	723	3	ENST00000301067.7:c.11515del	p.Gln3839SerfsTer42	p.Q3839Sfs*42	ENST00000301067	NM_003482.3	3839	Cag/ag																																																																															
MDM2	4193	MSKCC	GRCh37	12	69222651	69222651	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	202	592	1	ENST00000462284.1:c.624A>G	p.Ile208Met	p.I208M	ENST00000462284	NM_002392.5	208	atA/atG																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	384	739	8	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
POLE	5426	MSKCC	GRCh37	12	133257836	133257836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	163	533	0	ENST00000320574.5:c.92C>T	p.Ala31Val	p.A31V	ENST00000320574	NM_006231.2	31	gCa/gTa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437458	110437458	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866284428		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	168	562	0	ENST00000375856.3:c.943C>T	p.His315Tyr	p.H315Y	ENST00000375856	NM_003749.2	315	Cac/Tac																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438317	110438322	+	inframe_deletion	In_Frame_Del	DEL	GTTGTT	GTTGTT	-	rs1269430357		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	121	223	1	ENST00000375856.3:c.79_84del	p.Asn27_Asn28del	p.N27_N28del	ENST00000375856	NM_003749.2	27	AACAAC/-																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986832	36986832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	138	254	0	ENST00000354822.5:c.857G>A	p.Arg286Gln	p.R286Q	ENST00000354822	NM_001079668.2	286	cGa/cAa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562840	95562840	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	67	315	0	ENST00000343455.3:c.4417del	p.Ser1473GlnfsTer17	p.S1473Qfs*17	ENST00000343455	NM_177438.2	1473	Tca/ca																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562983	95562994	+	inframe_deletion	In_Frame_Del	DEL	TCCTCCTCCTCA	TCCTCCTCCTCA	-			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	81	345	0	ENST00000343455.3:c.4263_4274del	p.Asp1421_Glu1424del	p.D1421_E1424del	ENST00000343455	NM_177438.2	1421	gaTGAGGAGGAGGAg/gag																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643312	38643312	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	163	424	0	ENST00000299084.4:c.782A>G	p.Tyr261Cys	p.Y261C	ENST00000299084	NM_152594.2	261	tAc/tGc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628303	90628303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	273	955	0	ENST00000330062.3:c.1108G>A	p.Ala370Thr	p.A370T	ENST00000330062	NM_002168.2	370	Gcc/Acc																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	148	499	2	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2112603	2112603	+	splice_donor_variant	Splice_Site	SNP	T	T	C	rs397515301		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	159	672	0	ENST00000219476.3:c.1361+2T>C		p.X454_splice	ENST00000219476	NM_000548.3	454																																																																																
TSC2	7249	MSKCC	GRCh37	16	2134496	2134496	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	217	919	0	ENST00000219476.3:c.4276del	p.Glu1426LysfsTer50	p.E1426Kfs*50	ENST00000219476	NM_000548.3	1425	Ggg/gg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789642	3789642	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	198	549	0	ENST00000262367.5:c.4217A>G	p.Asp1406Gly	p.D1406G	ENST00000262367	NM_004380.2	1406	gAt/gGt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857785	9857785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	45	565	1	ENST00000330684.3:c.3616C>T	p.Arg1206Ter	p.R1206*	ENST00000330684	NM_001134407.1	1206	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991949	72991949	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs757302188		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	156	644	3	ENST00000268489.5:c.2096del	p.Gly699AlafsTer125	p.G699Afs*125	ENST00000268489	NM_006885.3	699	gGc/gc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348058	89348058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs886568838		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	304	1057	0	ENST00000301030.4:c.4892G>A	p.Arg1631Gln	p.R1631Q	ENST00000301030	NM_001256183.1	1631	cGg/cAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349946	89349946	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779328307		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	282	791	0	ENST00000301030.4:c.3004C>T	p.Arg1002Trp	p.R1002W	ENST00000301030	NM_001256183.1	1002	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	29	663	1	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs876659675		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	38	664	0	ENST00000269305.4:c.764T>G	p.Ile255Ser	p.I255S	ENST00000269305	NM_001126112.2	255	aTc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	225	803	0	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998959	11998959	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1208900089		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	121	318	1	ENST00000353533.5:c.461G>A	p.Arg154Gln	p.R154Q	ENST00000353533	NM_003010.3	154	cGg/cAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	111	328	0	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	130	414	0	ENST00000447079.4:c.4382del	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	384	750	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs758630849		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	39	551	1	ENST00000305921.3:c.1349del	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	281	854	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66526499	66526499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	187	439	1	ENST00000358598.2:c.1055G>A	p.Arg352Gln	p.R352Q	ENST00000358598	NM_212471.2	352	cGa/cAa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119962	70119962	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	116	434	0	ENST00000245479.2:c.964A>G	p.Ser322Gly	p.S322G	ENST00000245479	NM_000346.3	322	Agc/Ggc																																																																															
STK11	6794	MSKCC	GRCh37	19	1218447	1218447	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	197	667	0	ENST00000326873.7:c.326del	p.Asn109MetfsTer20	p.N109Mfs*20	ENST00000326873	NM_000455.4	108	Aaa/aa																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	185	717	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226817	2226817	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749350627		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	203	533	2	ENST00000398665.3:c.4297G>A	p.Val1433Met	p.V1433M	ENST00000398665	NM_032482.2	1433	Gtg/Atg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602799	10602799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	317	956	0	ENST00000171111.5:c.779G>A	p.Arg260Gln	p.R260Q	ENST00000171111	NM_203500.1	260	cGa/cAa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123782	11123783	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	41	555	0	ENST00000344626.4:c.2437_2438del	p.Ser813AsnfsTer10	p.S813Nfs*10	ENST00000344626	NM_003072.3	811	cCT/c																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141541	11141541	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	208	769	0	ENST00000344626.4:c.3522del	p.Phe1174LeufsTer42	p.F1174Lfs*42	ENST00000344626	NM_003072.3	1173	aTt/at																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288867	15288867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	120	357	0	ENST00000263388.2:c.3872G>A	p.Arg1291His	p.R1291H	ENST00000263388	NM_000435.2	1291	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210926	36210926	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373933410		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	238	857	0	ENST00000222270.7:c.677G>A	p.Arg226Gln	p.R226Q	ENST00000222270	NM_014727.1	226	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229429	36229429	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1356978354		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	148	492	0	ENST00000222270.7:c.8119G>A	p.Ala2707Thr	p.A2707T	ENST00000222270	NM_014727.1	2707	Gcc/Acc																																																																															
AKT2	208	MSKCC	GRCh37	19	40747868	40747868	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752597471		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	222	727	0	ENST00000392038.2:c.550C>T	p.Arg184Trp	p.R184W	ENST00000392038	NM_001626.4	184	Cgg/Tgg																																																																															
CD79A	973	MSKCC	GRCh37	19	42384807	42384807	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	138	514	1	ENST00000221972.3:c.567+2T>C		p.X189_splice	ENST00000221972	NM_021601.3	189																																																																																
CIC	23152	MSKCC	GRCh37	19	42795176	42795177	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	240	898	0	ENST00000575354.2:c.2258_2259del	p.Val753GlyfsTer9	p.V753Gfs*9	ENST00000575354	NM_015125.3	752	acTGtg/actg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47639588	47639588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	164	388	0	ENST00000233146.2:c.687del	p.Ala230LeufsTer16	p.A230Lfs*16	ENST00000233146	NM_000251.2	227	agA/ag																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	185	462	14	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																															
CASP8	841	MSKCC	GRCh37	2	202149799	202149799	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	185	589	0	ENST00000358485.4:c.1245del	p.Phe415LeufsTer26	p.F415Lfs*26	ENST00000358485	NM_001080125.1	414	Ttt/tt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022443	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-	rs750318549		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	78	338	0	ENST00000375687.4:c.1933_1934del	p.Gly645TrpfsTer12	p.G645Wfs*12	ENST00000375687	NM_015338.5	643	GGg/g																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279824	46279825	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAA	rs749655240		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	32	506	0	ENST00000371998.3:c.3752_3753insACA	p.Gln1276dup	p.Q1276dup	ENST00000371998		1276	-/CAA																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164805	36164805	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	231	908	0	ENST00000300305.3:c.1070del	p.Pro357ArgfsTer237	p.P357Rfs*237	ENST00000300305		357	cCg/cg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171723	36171723	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	132	394	0	ENST00000300305.3:c.842A>G	p.Tyr281Cys	p.Y281C	ENST00000300305		281	tAc/tGc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	247	383	16	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713184	30713184	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	25	361	0	ENST00000359013.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000359013	NM_001024847.2	195	aTc/aCc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933680	49933680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	315	894	0	ENST00000296474.3:c.2597C>A	p.Pro866His	p.P866H	ENST00000296474	NM_002447.2	866	cCc/cAc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	120	298	0	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																																																															
ATR	545	MSKCC	GRCh37	3	142217556	142217557	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1268253442		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	128	414	1	ENST00000350721.4:c.5440dup	p.Arg1814LysfsTer8	p.R1814Kfs*8	ENST00000350721	NM_001184.3	1814	aga/aAga																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374895	149374895	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1193595953		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	153	599	0	ENST00000360632.3:c.199A>G	p.Thr67Ala	p.T67A	ENST00000360632	NM_015472.4	67	Acc/Gcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919194	178919194	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	91	231	0	ENST00000263967.3:c.685del	p.Thr229LeufsTer11	p.T229Lfs*11	ENST00000263967	NM_006218.2	227	Aaa/aa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871287	35871287	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149161098		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	103	319	0	ENST00000303115.3:c.509G>A	p.Arg170His	p.R170H	ENST00000303115	NM_002185.3	170	cGc/cAc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945763	38945763	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	69	263	0	ENST00000357387.3:c.4463G>T	p.Ser1488Ile	p.S1488I	ENST00000357387	NM_152756.3	1488	aGt/aTt																																																																															
APC	324	MSKCC	GRCh37	5	112178033	112178033	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	117	423	0	ENST00000257430.4:c.6742A>T	p.Lys2248Ter	p.K2248*	ENST00000257430	NM_000038.5	2248	Aaa/Taa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944976	131944976	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	71	168	0	ENST00000265335.6:c.2928del	p.Glu977LysfsTer7	p.E977Kfs*7	ENST00000265335		975	cAa/ca																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046754	180046754	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	205	814	0	ENST00000261937.6:c.2558A>G	p.Tyr853Cys	p.Y853C	ENST00000261937	NM_182925.4	853	tAc/tGc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056961	180056961	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	201	861	0	ENST00000261937.6:c.658T>C	p.Phe220Leu	p.F220L	ENST00000261937	NM_182925.4	220	Ttc/Ctc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681463	30681463	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	145	438	0	ENST00000376406.3:c.549del	p.Lys183AsnfsTer9	p.K183Nfs*9	ENST00000376406	NM_014641.2	183	aaA/aa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681120	117681120	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772514180		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	139	482	0	ENST00000368508.3:c.3500del	p.Leu1167Ter	p.L1167*	ENST00000368508	NM_002944.2	1167	tTa/ta																																																																															
PARK2	5071	MSKCC	GRCh37	6	161807896	161807896	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	134	361	0	ENST00000366898.1:c.1097G>T	p.Arg366Leu	p.R366L	ENST00000366898	NM_004562.2	366	cGg/cTg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	179	406	2	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	180	827	2	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	160	398	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148514997	148514999	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	290	454	3	ENST00000320356.2:c.1210_1212del	p.Glu404del	p.E404del	ENST00000320356	NM_004456.4	404	GAG/-																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	261	432	9	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																															
MYC	4609	MSKCC	GRCh37	8	128750677	128750677	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28933407		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	204	668	1	ENST00000377970.2:c.214C>T	p.Pro72Ser	p.P72S	ENST00000377970	NM_002467.4	72	Ccc/Tcc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5064988	5064988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	108	335	0	ENST00000381652.3:c.1162G>A	p.Ala388Thr	p.A388T	ENST00000381652	NM_004972.3	388	Gca/Aca																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006062	22006062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	195	683	1	ENST00000276925.6:c.341G>A	p.Arg114His	p.R114H	ENST00000276925	NM_004936.3	114	cGt/cAt																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128434747	128434747	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	213	686	0	ENST00000265960.3:c.107T>C	p.Val36Ala	p.V36A	ENST00000265960	NM_001006617.1	36	gTt/gCt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938488	44938488	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	175	516	0	ENST00000377967.4:c.3036G>C	p.Trp1012Cys	p.W1012C	ENST00000377967	NM_021140.2	1012	tgG/tgC																																																																															
AR	367	MSKCC	GRCh37	X	66765149	66765151	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-	rs764402637		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	20	400	0	ENST00000374690.3:c.170_172del	p.Leu57del	p.L57del	ENST00000374690	NM_000044.3	54	tTGCtg/ttg																																																																															
AR	367	MSKCC	GRCh37	X	66766418	66766418	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	42	207	0	ENST00000374690.3:c.1430C>G	p.Ala477Gly	p.A477G	ENST00000374690	NM_000044.3	477	gCt/gGt																																																																															
MED12	9968	MSKCC	GRCh37	X	70343559	70343559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	150	568	0	ENST00000374080.3:c.1733C>T	p.Ala578Val	p.A578V	ENST00000374080		578	gCt/gTt																																																																															
MED12	9968	MSKCC	GRCh37	X	70357070	70357070	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773713291		P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	270	873	0	ENST00000374080.3:c.5585G>A	p.Arg1862His	p.R1862H	ENST00000374080		1862	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448297	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	254	744	2	ENST00000407977.2:c.350del	p.Arg117ProfsTer41	p.R117Pfs*41	ENST00000407977		117	cGc/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0045017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	47	244	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879885	37879885	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	750	870	0	ENST00000269571.5:c.2180G>C	p.Gly727Ala	p.G727A	ENST00000269571		727	gGa/gCa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0045147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	285	604	1	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0045147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	464	469	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244882	41244882	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	53	441	0	ENST00000357654.3:c.2666C>G	p.Ser889Cys	p.S889C	ENST00000357654	NM_007294.3	889	tCt/tGt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225264		P-0045147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	273	599	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061461	38061461	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	317	639	0	ENST00000250448.2:c.528C>G	p.Ile176Met	p.I176M	ENST00000250448	NM_004496.3	176	atC/atG																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202218	138202218	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0045147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	249	608	0	ENST00000237289.4:c.2135C>G	p.Ser712Ter	p.S712*	ENST00000237289	NM_001270507.1	712	tCa/tGa																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2493140	2493140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	280	610	0	ENST00000355716.4:c.580G>A	p.Ala194Thr	p.A194T	ENST00000355716	NM_003820.2	194	Gct/Act																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609528	81609528	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	62	432	0	ENST00000298171.2:c.1126G>C	p.Glu376Gln	p.E376Q	ENST00000298171	NM_000369.2	376	Gag/Cag																																																																															
CDH1	999	MSKCC	GRCh37	16	68845656	68845659	+	frameshift_variant	Frame_Shift_Del	DEL	CTTA	CTTA	-			P-0045147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	335	584	0	ENST00000261769.5:c.903_906del	p.Tyr302ProfsTer53	p.Y302Pfs*53	ENST00000261769	NM_004360.3	301	gCTTAc/gc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244820	41244820	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	49	435	0	ENST00000357654.3:c.2728C>G	p.Gln910Glu	p.Q910E	ENST00000357654	NM_007294.3	910	Caa/Gaa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245866	41245866	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	48	338	0	ENST00000357654.3:c.1682C>G	p.Ser561Cys	p.S561C	ENST00000357654	NM_007294.3	561	tCt/tGt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046391	69046391	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	123	539	0	ENST00000288368.4:c.3864G>C	p.Gln1288His	p.Q1288H	ENST00000288368	NM_024870.2	1288	caG/caC																																																																															
STAG2	10735	MSKCC	GRCh37	X	123220483	123220483	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	68	553	0	ENST00000218089.9:c.3140C>G	p.Ser1047Cys	p.S1047C	ENST00000218089	NM_001042749.1	1047	tCt/tGt																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128047393	128047393	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139690693		P-0045222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	45	379	0	ENST00000285398.2:c.529G>A	p.Val177Ile	p.V177I	ENST00000285398	NM_000122.1	177	Gtt/Att																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204631	128204631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	65	836	0	ENST00000341105.2:c.810C>A	p.Phe270Leu	p.F270L	ENST00000341105	NM_032638.4	270	ttC/ttA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720649	89720649	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T	rs587782455		P-0047572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	95	332	1	ENST00000371953.3:c.802-2A>T		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40730802	40730802	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747513450		P-0047572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	362	604	3	ENST00000373198.4:c.3733G>A	p.Gly1245Arg	p.G1245R	ENST00000373198	NM_133170.3	1245	Gga/Aga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0047572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	138	276	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0047572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	356	706	0	ENST00000269305.4:c.376-2A>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
PTEN	5728	MSKCC	GRCh37	10	89624252	89624252	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	82	214	0	ENST00000371953.3:c.27del	p.Ser10AlafsTer14	p.S10Afs*14	ENST00000371953	NM_000314.4	9	gTt/gt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368277	45368277	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	20	308	0	ENST00000262160.6:c.1325del	p.Leu442ArgfsTer12	p.L442Rfs*12	ENST00000262160	NM_005901.5	442	cTg/cg																																																																															
APC	324	MSKCC	GRCh37	5	112174093	112174097	+	frameshift_variant	Frame_Shift_Del	DEL	TTACA	TTACA	-			P-0047572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	86	258	0	ENST00000257430.4:c.2802_2806del	p.Tyr935PhefsTer3	p.Y935Ffs*3	ENST00000257430	NM_000038.5	934	acTTACAat/acat																																																																															
APC	324	MSKCC	GRCh37	5	112175933	112175936	+	frameshift_variant	Frame_Shift_Del	DEL	AACC	AACC	-			P-0047572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	54	173	0	ENST00000257430.4:c.4644_4647del	p.Asn1548LysfsTer16	p.N1548Kfs*16	ENST00000257430	NM_000038.5	1548	AACCaa/aa																																																																															
TEK	7010	MSKCC	GRCh37	9	27197350	27197351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	126	376	0	ENST00000380036.4:c.1662_1663insG	p.Ser555GlufsTer19	p.S555Efs*19	ENST00000380036	NM_000459.3	554	-/G																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021729	71021729	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	44	298	0	ENST00000318789.4:c.1629del	p.Lys543AsnfsTer56	p.K543Nfs*56	ENST00000318789	NM_032682.5	543	aaA/aa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633314	3633314	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	10	859	1	ENST00000294008.3:c.4937A>T	p.Glu1646Val	p.E1646V	ENST00000294008	NM_032444.2	1646	gAg/gTg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18972933	18972933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	42	612	1	ENST00000262803.5:c.2572C>T	p.Arg858Cys	p.R858C	ENST00000262803	NM_002911.3	858	Cgt/Tgt																																																																															
ERF	2077	MSKCC	GRCh37	19	42753612	42753612	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1425504754		P-0048791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	47	871	1	ENST00000222329.4:c.652C>T	p.Arg218Ter	p.R218*	ENST00000222329	NM_006494.2	218	Cga/Tga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061219	38061229	+	protein_altering_variant	In_Frame_Del	DEL	CCGTTCTCGAA	CCGTTCTCGAA	AACTTGCG			P-0052056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	68	501	1	ENST00000250448.2:c.760_770delinsCGCAAGTT	p.Phe254_Gly257delinsArgLysPhe	p.F254_G257delinsRKF	ENST00000250448	NM_004496.3	254	TTCGAGAACGGc/CGCAAGTTc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056417-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			1168	42	798	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111496	8111512	+	frameshift_variant	Frame_Shift_Del	DEL	TGGAGGAGGAATGCCAA	TGGAGGAGGAATGCCAA	-			P-0056417-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			1052	58	680	0	ENST00000346208.3:c.985_1001del	p.Arg329GlyfsTer17	p.R329Gfs*17	ENST00000346208		328	TGGAGGAGGAATGCCAAt/t																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0056656-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			441	611	875	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66467623	66467623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056656-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			725	88	533	0	ENST00000273854.3:c.646G>T	p.Asp216Tyr	p.D216Y	ENST00000273854	NM_004439.5	216	Gat/Tat																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78897351	78897351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056656-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			1069	140	1112	1	ENST00000306801.3:c.2686C>T	p.Pro896Ser	p.P896S	ENST00000306801	NM_020761.2	896	Ccg/Tcg																																																																															
KLF5	688	MSKCC	GRCh37	13	73636849	73636849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056656-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			1201	229	580	0	ENST00000377687.4:c.1112G>A	p.Arg371His	p.R371H	ENST00000377687	NM_001730.3	371	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5208054	5208054	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056656-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			373	432	867	0	ENST00000357368.4:c.5657G>T	p.Arg1886Met	p.R1886M	ENST00000357368	NM_002850.3	1886	aGg/aTg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141542516	141542516	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0056656-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			349	201	735	0	ENST00000220592.5:c.2470A>T	p.Ser824Cys	p.S824C	ENST00000220592	NM_012154.3	824	Agt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262645	16262645	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059849-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	261	611	0	ENST00000375759.3:c.9910C>G	p.Gln3304Glu	p.Q3304E	ENST00000375759	NM_015001.2	3304	Caa/Gaa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162741944	162741944	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059849-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	250	644	2	ENST00000367921.3:c.1635G>T	p.Met545Ile	p.M545I	ENST00000367921	NM_006182.2	545	atG/atT																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745634	162745634	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0059849-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			400	250	603	0	ENST00000367921.3:c.2048+1G>T		p.X683_splice	ENST00000367921	NM_006182.2	683																																																																																
RET	5979	MSKCC	GRCh37	10	43600462	43600462	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059849-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			329	144	744	0	ENST00000355710.3:c.688G>C	p.Asp230His	p.D230H	ENST00000355710	NM_020975.4	230	Gac/Cac																																																																															
RET	5979	MSKCC	GRCh37	10	43604678	43604678	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0059849-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			282	150	529	0	ENST00000355710.3:c.1263G>T	p.Gln421His	p.Q421H	ENST00000355710	NM_020975.4	421	caG/caT																																																																															
PGR	5241	MSKCC	GRCh37	11	100998409	100998409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059849-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			262	231	571	0	ENST00000325455.5:c.1393G>T	p.Ala465Ser	p.A465S	ENST00000325455	NM_001202474.3	465	Gcg/Tcg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434357	121434357	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059849-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			357	144	683	0	ENST00000257555.6:c.1121G>T	p.Gly374Val	p.G374V	ENST00000257555		374	gGg/gTg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134846	41134846	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059849-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			322	128	593	0	ENST00000379561.5:c.782G>T	p.Ser261Ile	p.S261I	ENST00000379561	NM_002015.3	261	aGt/aTt																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281216	49281216	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0059849-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			134	212	564	3	ENST00000282018.3:c.263del	p.Ile88LysfsTer42	p.I88Kfs*42	ENST00000282018	NM_020377.2	88	aTa/aa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103506191	103506191	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059849-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	21	467	0	ENST00000355739.4:c.349C>A	p.Gln117Lys	p.Q117K	ENST00000355739	NM_000123.3	117	Caa/Aaa																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023231	33023232	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0059849-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			214	354	711	0	ENST00000300177.4:c.341dup	p.Asn115GlnfsTer46	p.N115Qfs*46	ENST00000300177	NM_001191322.1	114	atc/aTtc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30129433	30129433	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059849-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			208	296	620	0	ENST00000263025.4:c.595G>T	p.Gly199Cys	p.G199C	ENST00000263025	NM_002746.2	199	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059849-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			207	332	711	0	ENST00000269305.4:c.542G>C	p.Arg181Pro	p.R181P	ENST00000269305	NM_001126112.2	181	cGc/cCc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602763	10602763	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs774469695		P-0059849-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			204	342	716	0	ENST00000171111.5:c.815G>T	p.Arg272Leu	p.R272L	ENST00000171111	NM_203500.1	272	cGc/cTc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530203	212530203	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0059849-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			290	193	493	0	ENST00000342788.4:c.1717-1G>T		p.X573_splice	ENST00000342788	NM_005235.2	573																																																																																
ZNRF3	84133	MSKCC	GRCh37	22	29446840	29446840	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059849-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			429	31	620	0	ENST00000544604.2:c.2671G>T	p.Gly891Cys	p.G891C	ENST00000544604	NM_001206998.1	891	Ggc/Tgc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79961069	79961069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059849-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			156	201	560	0	ENST00000265081.6:c.466C>G	p.Leu156Val	p.L156V	ENST00000265081	NM_002439.4	156	Ctg/Gtg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864374	162864374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059849-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			139	216	529	2	ENST00000366898.1:c.139G>T	p.Gly47Trp	p.G47W	ENST00000366898	NM_004562.2	47	Ggg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971158	21971158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059849-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			151	294	731	0	ENST00000304494.5:c.200G>T	p.Gly67Val	p.G67V	ENST00000304494	NM_000077.4	67	gGc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0060084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			980	24	634	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0060084-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			520	40	338	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720650	89720650	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs1257124719		P-0060479-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			35	16	138	0	ENST00000371953.3:c.802-1G>A		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49431892	49431893	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0060479-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			411	203	695	1	ENST00000301067.7:c.9246_9247delinsTT	p.Glu3083Ter	p.E3083*	ENST00000301067	NM_003482.3	3082	cgGGag/cgTTag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577501	7577503	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GGA	GGA	-			P-0060479-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			365	102	438	0	ENST00000269305.4:c.778_780del	p.Ser261del	p.S261del	ENST00000269305	NM_001126112.2	260	TCC/-																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610549	10610549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060479-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			434	209	648	0	ENST00000171111.5:c.161A>G	p.Tyr54Cys	p.Y54C	ENST00000171111	NM_203500.1	54	tAc/tGc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47502617	47502617	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060479-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			192	83	403	0	ENST00000404338.3:c.4093C>A	p.Pro1365Thr	p.P1365T	ENST00000404338	NM_004491.4	1365	Cca/Aca																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52649448	52649448	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0060479-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			137	49	334	0	ENST00000394830.3:c.1843G>T	p.Glu615Ter	p.E615*	ENST00000394830	NM_018313.4	615	Gag/Tag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873020	134873020	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060479-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			283	77	530	0	ENST00000398015.3:c.1324C>A	p.Gln442Lys	p.Q442K	ENST00000398015	NM_004441.4	442	Caa/Aaa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138461542	138461543	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0060479-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			169	24	403	0	ENST00000289153.2:c.478dup	p.Ile160AsnfsTer22	p.I160Nfs*22	ENST00000289153	NM_006219.2	160	atc/aAtc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117631400	117631400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060479-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			154	19	334	0	ENST00000368508.3:c.6278C>T	p.Thr2093Ile	p.T2093I	ENST00000368508	NM_002944.2	2093	aCc/aTc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100364	157100364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060479-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			316	46	393	0	ENST00000346085.5:c.1301G>A	p.Gly434Asp	p.G434D	ENST00000346085	NM_020732.3	434	gGc/gAc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2977668	2977668	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0060479-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			272	71	398	0	ENST00000396946.4:c.1018-2A>G		p.X340_splice	ENST00000396946	NM_032415.4	340																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151843774	151843775	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0060479-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			324	39	436	0	ENST00000262189.6:c.13940dup	p.Ser4648ValfsTer2	p.S4648Vfs*2	ENST00000262189	NM_170606.2	4647	aag/aaAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151848666	151848666	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0060479-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			174	54	375	0	ENST00000262189.6:c.12527G>T	p.Gly4176Val	p.G4176V	ENST00000262189	NM_170606.2	4176	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974799	21974799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0060479-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			283	163	602	0	ENST00000304494.5:c.28G>T	p.Glu10Ter	p.E10*	ENST00000304494	NM_000077.4	10	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579472	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0060479-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			458	98	635	0	ENST00000269305.4:c.215_216del	p.Pro72ArgfsTer76	p.P72Rfs*76	ENST00000269305	NM_001126112.2	72	cCC/c																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530196	63530196	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0060484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	61	568	1	ENST00000307078.5:c.2239C>A	p.His747Asn	p.H747N	ENST00000307078	NM_004655.3	747	Cac/Aac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541698	187541698	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0060484-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	61	822	0	ENST00000441802.2:c.6042T>G	p.Tyr2014Ter	p.Y2014*	ENST00000441802	NM_005245.3	2014	taT/taG																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0060485-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1033	191	1142	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151856070	151856070	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0060485-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	40	712	0	ENST00000262189.6:c.11548C>T	p.Arg3850Ter	p.R3850*	ENST00000262189	NM_170606.2	3850	Cga/Tga																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223532	2223532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060485-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1037	74	1149	0	ENST00000326181.6:c.1063C>T	p.Arg355Trp	p.R355W	ENST00000326181	NM_032271.2	355	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0060485-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	6	355	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732925	30732925	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060485-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			715	107	814	0	ENST00000359013.4:c.1613T>G	p.Val538Gly	p.V538G	ENST00000359013	NM_001024847.2	538	gTg/gGg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845591	151845591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060485-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	36	938	1	ENST00000262189.6:c.13421G>A	p.Cys4474Tyr	p.C4474Y	ENST00000262189	NM_170606.2	4474	tGc/tAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044990	47044991	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0060485-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	91	618	0	ENST00000329236.7:c.2085_2086dup	p.Leu696ArgfsTer29	p.L696Rfs*29	ENST00000329236	NM_001204466.1	694	-/GC																																																																															
ARAF	369	MSKCC	GRCh37	X	47430822	47430822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060485-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	111	604	0	ENST00000377045.4:c.1787C>T	p.Ala596Val	p.A596V	ENST00000377045	NM_001654.4	596	gCc/gTc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0060489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	7834	734	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36945090	36945090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	108	650	0	ENST00000361632.4:c.8G>T	p.Arg3Met	p.R3M	ENST00000361632		3	aGg/aTg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26911721	26911721	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			54	11	33	0	ENST00000381527.3:c.146A>G	p.Tyr49Cys	p.Y49C	ENST00000381527	NM_001260.1	49	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112128171	112128171	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0060489-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	38	181	0	ENST00000257430.4:c.677del	p.Lys226ArgfsTer67	p.K226Rfs*67	ENST00000257430	NM_000038.5	225	gAa/ga																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913233		P-0060494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1012	128	1037	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226345	2226345	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	147	656	1	ENST00000326181.6:c.1958G>T	p.Arg653Leu	p.R653L	ENST00000326181	NM_032271.2	653	cGg/cTg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091178	29091178	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs200050883		P-0060496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			156	21	154	0	ENST00000328354.6:c.1312G>T	p.Asp438Tyr	p.D438Y	ENST00000328354	NM_007194.3	438	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0060496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	96	305	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
WT1	7490	MSKCC	GRCh37	11	32456338	32456338	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	91	670	0	ENST00000332351.3:c.554C>A	p.Pro185His	p.P185H	ENST00000332351	NM_024426.4	185	cCc/cAc																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518554	69518554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	63	549	0	ENST00000294312.3:c.91G>T	p.Gly31Trp	p.G31W	ENST00000294312	NM_005117.2	31	Ggg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211381	36211382	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0060496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	65	564	0	ENST00000222270.7:c.1132_1133delinsTT	p.Gly378Leu	p.G378L	ENST00000222270	NM_014727.1	378	GGa/TTa																																																																															
SRC	6714	MSKCC	GRCh37	20	36024600	36024600	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs755567292		P-0060496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	136	516	0	ENST00000358208.4:c.589G>T	p.Ala197Ser	p.A197S	ENST00000358208		197	Gcc/Tcc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448611	89448611	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	89	487	0	ENST00000336596.2:c.1575G>C	p.Glu525Asp	p.E525D	ENST00000336596	NM_005233.5	525	gaG/gaC																																																																															
BCL6	604	MSKCC	GRCh37	3	187446962	187446962	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	121	650	0	ENST00000232014.4:c.1231C>G	p.Pro411Ala	p.P411A	ENST00000232014	NM_001130845.1	411	Cca/Gca																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143045772	143045772	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	52	383	0	ENST00000262992.4:c.1862C>G	p.Thr621Arg	p.T621R	ENST00000262992	NM_001101669.1	621	aCg/aGg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981632	70981632	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	83	567	0	ENST00000276594.2:c.464C>A	p.Ala155Glu	p.A155E	ENST00000276594	NM_024504.3	155	gCg/gAg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564650	139564650	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	128	520	0	ENST00000308874.7:c.439G>C	p.Gly147Arg	p.G147R	ENST00000308874		147	Ggc/Cgc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412695	63412695	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0060496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	137	465	0	ENST00000330258.3:c.472A>T	p.Lys158Ter	p.K158*	ENST00000330258	NM_152424.3	158	Aag/Tag																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123504080	123504080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	65	311	0	ENST00000371139.4:c.256G>A	p.Ala86Thr	p.A86T	ENST00000371139	NM_001114937.2	86	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7579467	7579472	+	missense_variant	Missense_Mutation	ONP	CCACGG	CCACGG	AAACGC			P-0060496-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	156	693	0	ENST00000269305.4:c.215_220delinsGCGTTT	p.Pro72_Ala74delinsArgValSer	p.P72_A74delinsRVS	ENST00000269305	NM_001126112.2	72	cCCGTGGcc/cGCGTTTcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576870	7576870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs876659384		P-0060497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	125	707	0	ENST00000269305.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000269305	NM_001126112.2	326	Gaa/Taa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207081	1207081	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs137854584		P-0060497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	139	704	0	ENST00000326873.7:c.169G>T	p.Glu57Ter	p.E57*	ENST00000326873	NM_000455.4	57	Gaa/Taa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948376	71948376	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746017563		P-0060497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	142	866	1	ENST00000298229.2:c.3088C>T	p.Arg1030Trp	p.R1030W	ENST00000298229	NM_001567.3	1030	Cgg/Tgg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514677	103514677	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	96	703	0	ENST00000355739.4:c.1178G>T	p.Arg393Ile	p.R393I	ENST00000355739	NM_000123.3	393	aGa/aTa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789714	3789714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	14	534	0	ENST00000262367.5:c.4145C>A	p.Ser1382Tyr	p.S1382Y	ENST00000262367	NM_004380.2	1382	tCt/tAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346303	89346315	+	frameshift_variant	Frame_Shift_Del	DEL	GCCACGTCCAGCT	GCCACGTCCAGCT	-			P-0060497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	47	764	0	ENST00000301030.4:c.6635_6647del	p.Lys2212IlefsTer2	p.K2212Ifs*2	ENST00000301030	NM_001256183.1	2212	aAGCTGGACGTGGCt/at																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610234	10610242	+	inframe_deletion	In_Frame_Del	DEL	GCACCGTTC	GCACCGTTC	-			P-0060497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	145	620	0	ENST00000171111.5:c.468_476del	p.Met156_Ala159delinsIle	p.M156_A159delinsI	ENST00000171111	NM_203500.1	156	atGAACGGTGCt/att																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217280	66217280	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	18	502	0	ENST00000273854.3:c.2335G>T	p.Gly779Cys	p.G779C	ENST00000273854	NM_004439.5	779	Ggc/Tgc																																																																															
SDHA	6389	MSKCC	GRCh37	5	233719	233720	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0060497-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	37	223	0	ENST00000264932.6:c.1025_1026del	p.Val342GlyfsTer18	p.V342Gfs*18	ENST00000264932	NM_004168.2	341	gaTGtg/gatg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0060498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	49	626	1	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519995		P-0060498-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	19	542	0	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587781525		P-0060504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	286	930	0	ENST00000269305.4:c.842A>G	p.Asp281Gly	p.D281G	ENST00000269305	NM_001126112.2	281	gAc/gGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431115	49431115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	164	1301	0	ENST00000301067.7:c.10024del	p.Arg3342AlafsTer16	p.R3342Afs*16	ENST00000301067	NM_003482.3	3342	Cgc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579315	7579315	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0060505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	40	627	0	ENST00000269305.4:c.372C>A	p.Cys124Ter	p.C124*	ENST00000269305	NM_001126112.2	124	tgC/tgA																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256056	16256056	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	104	736	0	ENST00000375759.3:c.3321T>G	p.Ile1107Met	p.I1107M	ENST00000375759	NM_015001.2	1107	atT/atG																																																																															
USP8	9101	MSKCC	GRCh37	15	50769178	50769178	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	128	438	0	ENST00000433963.1:c.982G>T	p.Val328Leu	p.V328L	ENST00000433963	NM_001128611.1	328	Gtg/Ttg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627775	37627775	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs778359739		P-0060505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	199	706	0	ENST00000447079.4:c.1690C>G	p.Pro564Ala	p.P564A	ENST00000447079	NM_015083.1	564	Cca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578412	7578412	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519747		P-0060507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	467	943	0	ENST00000269305.4:c.518T>A	p.Val173Glu	p.V173E	ENST00000269305	NM_001126112.2	173	gTg/gAg																																																																															
KDR	3791	MSKCC	GRCh37	4	55948770	55948770	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368229220		P-0060507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	153	298	1	ENST00000263923.4:c.3695G>A	p.Arg1232Gln	p.R1232Q	ENST00000263923	NM_002253.2	1232	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0060507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	383	301	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712616	43712616	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			899	319	648	0	ENST00000382044.4:c.4568T>C	p.Leu1523Pro	p.L1523P	ENST00000382044	NM_001141980.1	1523	cTc/cCc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678430	88678430	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			828	280	688	0	ENST00000360948.2:c.1106C>G	p.Thr369Ser	p.T369S	ENST00000360948	NM_001012338.2	369	aCc/aGc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40353831	40353831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			616	390	749	0	ENST00000293328.3:c.2289G>A	p.Met763Ile	p.M763I	ENST00000293328	NM_012448.3	763	atG/atA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591928	48591928	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0060507-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	145	535	0	ENST00000342988.3:c.1091T>A	p.Leu364Ter	p.L364*	ENST00000342988	NM_005359.5	364	tTg/tAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0060510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	24	570	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220644	1220644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1167609100		P-0060510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			853	37	976	0	ENST00000326873.7:c.662C>T	p.Pro221Leu	p.P221L	ENST00000326873	NM_000455.4	221	cCg/cTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971170	21971170	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			802	64	939	0	ENST00000304494.5:c.188T>C	p.Leu63Pro	p.L63P	ENST00000304494	NM_000077.4	63	cTg/cCg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974686	21974721	+	inframe_deletion	In_Frame_Del	DEL	CCTCCGACCGTAACTATTCGGTGCGTTGGGCAGCGC	CCTCCGACCGTAACTATTCGGTGCGTTGGGCAGCGC	-			P-0060510-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			794	46	911	0	ENST00000304494.5:c.106_141del	p.Ala36_Arg47del	p.A36_R47del	ENST00000304494	NM_000077.4	36	GCGCTGCCCAACGCACCGAATAGTTACGGTCGGAGG/-																																																																															
PAK1	5058	MSKCC	GRCh37	11	77066842	77066842	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs887262054		P-0060522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	81	566	0	ENST00000356341.3:c.643C>T	p.Arg215Trp	p.R215W	ENST00000356341	NM_002576.4	215	Cgg/Tgg																																																																															
ERG	2078	MSKCC	GRCh37	21	39755752	39755766	+	inframe_deletion	In_Frame_Del	DEL	TCCCCGTTGGTGCCT	TCCCCGTTGGTGCCT	-			P-0060522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	79	621	0	ENST00000288319.7:c.999_1013del	p.Gly334_Glu338del	p.G334_E338del	ENST00000288319	NM_182918.3	333	gaAGGCACCAACGGGGAg/gag																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437853	52437853	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	212	666	0	ENST00000460680.1:c.1308A>C	p.Gln436His	p.Q436H	ENST00000460680	NM_004656.3	436	caA/caC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859783	151859783	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0060522-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	204	748	0	ENST00000262189.6:c.10879del	p.Ser3627GlnfsTer3	p.S3627Qfs*3	ENST00000262189	NM_170606.2	3627	Tca/ca																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0060530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	55	405	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	272	731	0	ENST00000269305.4:c.472C>G	p.Arg158Gly	p.R158G	ENST00000269305	NM_001126112.2	158	Cgc/Ggc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242474	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGA	GAATTAAGA	-			P-0060530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			962	156	417	0	ENST00000275493.2:c.2239_2247del	p.Leu747_Glu749del	p.L747_E749del	ENST00000275493	NM_005228.3	746	GAATTAAGA/-																																																																															
UPF1	5976	MSKCC	GRCh37	19	18961628	18961628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060530-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	60	593	0	ENST00000262803.5:c.761C>A	p.Ala254Glu	p.A254E	ENST00000262803	NM_002911.3	254	gCa/gAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913351		P-0060533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	68	427	0	ENST00000288602.6:c.1397G>A	p.Gly466Glu	p.G466E	ENST00000288602	NM_004333.4	466	gGa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574002	7574002	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs375338359		P-0060533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	197	586	0	ENST00000269305.4:c.1025G>C	p.Arg342Pro	p.R342P	ENST00000269305	NM_001126112.2	342	cGa/cCa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615730	1615730	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372168347		P-0060533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	263	818	0	ENST00000344749.5:c.1541C>T	p.Ser514Leu	p.S514L	ENST00000344749	NM_001136139.2	514	tCg/tTg																																																																															
CDC42	998	MSKCC	GRCh37	1	22412959	22412959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	49	280	0	ENST00000344548.3:c.206C>T	p.Pro69Leu	p.P69L	ENST00000344548	NM_001039802.1	69	cCg/cTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212522479	212522479	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs978290380		P-0060533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	85	588	0	ENST00000342788.4:c.1946G>T	p.Arg649Ile	p.R649I	ENST00000342788	NM_005235.2	649	aGa/aTa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610322	10610322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	263	799	0	ENST00000171111.5:c.388C>T	p.Pro130Ser	p.P130S	ENST00000171111	NM_203500.1	130	Ccc/Tcc																																																																															
TET2	54790	MSKCC	GRCh37	4	106196249	106196249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	99	772	0	ENST00000380013.4:c.4582C>T	p.Pro1528Ser	p.P1528S	ENST00000380013	NM_001127208.2	1528	Ccc/Tcc																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599873	28599873	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	56	545	0	ENST00000253063.3:c.755T>C	p.Phe252Ser	p.F252S	ENST00000253063	NM_031459.4	252	tTt/tCt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193091458	193091458	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0060533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	97	575	0	ENST00000367435.3:c.128G>A	p.Trp43Ter	p.W43*	ENST00000367435	NM_024529.4	43	tGg/tAg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245758	46245758	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	310	708	0	ENST00000334344.6:c.3853del	p.Glu1285LysfsTer10	p.E1285Kfs*10	ENST00000334344	NM_152641.2	1284	aaG/aa																																																																															
NF1	4763	MSKCC	GRCh37	17	29663667	29663667	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	64	435	0	ENST00000358273.4:c.6162G>T	p.Met2054Ile	p.M2054I	ENST00000358273	NM_001042492.2	2054	atG/atT																																																																															
NF2	4771	MSKCC	GRCh37	22	30067822	30067822	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	85	547	0	ENST00000338641.4:c.1007G>T	p.Arg336Leu	p.R336L	ENST00000338641	NM_000268.3	336	cGg/cTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266045	41266045	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	82	554	0	ENST00000349496.5:c.42G>T	p.Met14Ile	p.M14I	ENST00000349496	NM_001904.3	14	atG/atT																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55124972	55124972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	74	487	0	ENST00000257290.5:c.37T>C	p.Cys13Arg	p.C13R	ENST00000257290	NM_006206.4	13	Tgt/Cgt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133594	55133594	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0060533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	185	646	0	ENST00000257290.5:c.898A>T	p.Lys300Ter	p.K300*	ENST00000257290	NM_006206.4	300	Aaa/Taa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149514402	149514402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	106	683	0	ENST00000261799.4:c.542G>C	p.Gly181Ala	p.G181A	ENST00000261799	NM_002609.3	181	gGt/gCt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93974315	93974315	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060533-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	68	356	0	ENST00000369303.4:c.1739G>T	p.Arg580Ile	p.R580I	ENST00000369303	NM_004440.3	580	aGa/aTa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210914	36210914	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749729184		P-0060542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	41	722	0	ENST00000222270.7:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000222270	NM_014727.1	222	cGg/cAg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307306	118307309	+	frameshift_variant	Frame_Shift_Del	DEL	CTAG	CTAG	-			P-0060542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	23	333	0	ENST00000534358.1:c.79_82del	p.Leu27GlyfsTer122	p.L27Gfs*122	ENST00000534358	NM_005933.3	27	CTAGgg/gg																																																																															
NPM1	4869	MSKCC	GRCh37	5	170832351	170832351	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060542-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	12	149	0	ENST00000296930.5:c.715A>G	p.Lys239Glu	p.K239E	ENST00000296930	NM_002520.6	239	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0060543-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	323	554	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259516	+	missense_variant	Missense_Mutation	DNP	TG	TG	GT	rs1057519848		P-0060543-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1160	232	554	0	ENST00000275493.2:c.2573_2574delinsGT	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTG/cGT																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838311	156838311	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0060543-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			768	287	737	0	ENST00000524377.1:c.590del	p.Lys197ArgfsTer42	p.K197Rfs*42	ENST00000524377	NM_002529.3	197	Aag/ag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858618	57858618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060543-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			545	174	640	0	ENST00000228682.2:c.356G>T	p.Gly119Val	p.G119V	ENST00000228682	NM_005269.2	119	gGc/gTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32181015	32181015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060543-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	131	488	0	ENST00000375023.3:c.2335G>A	p.Gly779Arg	p.G779R	ENST00000375023	NM_004557.3	779	Ggg/Agg																																																																															
PARK2	5071	MSKCC	GRCh37	6	161771164	161771165	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0060543-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	182	494	0	ENST00000366898.1:c.1364dup	p.Val456ArgfsTer113	p.V456Rfs*113	ENST00000366898	NM_004562.2	455	cgc/cgGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0060544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	143	684	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0060544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			810	87	791	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851765	134851765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			665	98	768	0	ENST00000398015.3:c.1171G>A	p.Val391Ile	p.V391I	ENST00000398015	NM_004441.4	391	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112174471	112174475	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAC	AAAAC	-	rs1162672416		P-0060544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	96	560	0	ENST00000257430.4:c.3183_3187del	p.Gln1062Ter	p.Q1062*	ENST00000257430	NM_000038.5	1060	atAAAACaa/ataa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467841	50467841	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752909152		P-0060544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			659	70	709	0	ENST00000331340.3:c.1076C>T	p.Pro359Leu	p.P359L	ENST00000331340	NM_006060.4	359	cCg/cTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114905788	114905788	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0060544-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	37	491	0	ENST00000543371.1:c.807C>A	p.Tyr269Ter	p.Y269*	ENST00000543371	NM_001198531.1	269	taC/taA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0060549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	121	519	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155725	56155726	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0060549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	203	444	0	ENST00000399503.3:c.819_820del	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	273	AGa/a																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061115	38061115	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1016447126		P-0060549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	183	600	0	ENST00000250448.2:c.874G>A	p.Glu292Lys	p.E292K	ENST00000250448	NM_004496.3	292	Gag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061309	38061309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	178	711	0	ENST00000250448.2:c.680G>A	p.Cys227Tyr	p.C227Y	ENST00000250448	NM_004496.3	227	tGc/tAc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061226	38061226	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	175	614	0	ENST00000250448.2:c.763G>C	p.Glu255Gln	p.E255Q	ENST00000250448	NM_004496.3	255	Gag/Cag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874112	151874112	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	GG			P-0060549-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	124	562	0	ENST00000262189.6:c.8426delinsCC	p.Lys2809ThrfsTer13	p.K2809Tfs*13	ENST00000262189	NM_170606.2	2809	aAa/aCCa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256229	16256229	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0060559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	157	565	1	ENST00000375759.3:c.3494del	p.His1165ProfsTer22	p.H1165Pfs*22	ENST00000375759	NM_015001.2	1165	cAc/cc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577330	64577333	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0060559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	298	572	0	ENST00000337652.1:c.249_252del	p.Ile85SerfsTer33	p.I85Sfs*33	ENST00000337652	NM_130803.2	83	ctGTCT/ct																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288947	33288947	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0060559-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	420	522	0	ENST00000374542.5:c.605T>A	p.Ile202Asn	p.I202N	ENST00000374542	NM_001141970.1	202	aTc/aAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0060561-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	290	370	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0060561-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	167	655	1	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467924	50467924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060561-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			820	110	553	0	ENST00000331340.3:c.1159G>A	p.Glu387Lys	p.E387K	ENST00000331340	NM_006060.4	387	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0060565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	148	448	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112154963	112154963	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660802		P-0060565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	67	482	0	ENST00000257430.4:c.1234C>T	p.Gln412Ter	p.Q412*	ENST00000257430	NM_000038.5	412	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112164604	112164604	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0060565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	98	428	0	ENST00000257430.4:c.1682del	p.Lys561ArgfsTer9	p.K561Rfs*9	ENST00000257430	NM_000038.5	560	Aaa/aa																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881681	111881684	+	frameshift_variant	Frame_Shift_Del	DEL	CTTG	CTTG	-			P-0060565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	143	505	0	ENST00000393256.3:c.360_363del	p.Cys121ArgfsTer13	p.C121Rfs*13	ENST00000393256	NM_006538.4	120	cCTTGc/cc																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80537192	80537192	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0060565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	13	278	0	ENST00000286548.4:c.206A>T	p.Asp69Val	p.D69V	ENST00000286548	NM_002072.3	69	gAt/gTt																																																																															
ATM	472	MSKCC	GRCh37	11	108121472	108121472	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0060623-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	34	458	0	ENST00000278616.4:c.1280T>A	p.Leu427Ter	p.L427*	ENST00000278616	NM_000051.3	427	tTa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0060630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	38	668	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0060630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	38	371	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0060630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	45	487	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
ERG	2078	MSKCC	GRCh37	21	39764312	39764312	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751217612		P-0060630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	36	476	2	ENST00000288319.7:c.800C>T	p.Thr267Met	p.T267M	ENST00000288319	NM_182918.3	267	aCg/aTg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40359658	40359659	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0060630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	48	419	0	ENST00000293328.3:c.1994dup	p.Tyr665Ter	p.Y665*	ENST00000293328	NM_012448.3	665	tac/taAc																																																																															
CIC	23152	MSKCC	GRCh37	19	42794442	42794442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	39	629	0	ENST00000575354.2:c.1522C>T	p.Pro508Ser	p.P508S	ENST00000575354	NM_015125.3	508	Ccc/Tcc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794971	242794971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	38	588	0	ENST00000334409.5:c.238G>A	p.Ala80Thr	p.A80T	ENST00000334409	NM_005018.2	80	Gcc/Acc																																																																															
ETV1	2115	MSKCC	GRCh37	7	14026295	14026295	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0060630-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	41	237	0	ENST00000405192.2:c.149T>A	p.Leu50Gln	p.L50Q	ENST00000405192	NM_001163147.1	50	cTa/cAa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519968		P-0060638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	38	636	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061229	38061237	+	inframe_deletion	In_Frame_Del	DEL	ACATGTTGC	ACATGTTGC	-			P-0060638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1018	25	961	0	ENST00000250448.2:c.752_760del	p.Gly251_Phe254delinsVal	p.G251_F254delinsV	ENST00000250448	NM_004496.3	251	gGCAACATGTtc/gtc																																																																															
AR	367	MSKCC	GRCh37	X	66931261	66931261	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060638-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	28	327	0	ENST00000374690.3:c.1903C>G	p.Leu635Val	p.L635V	ENST00000374690	NM_000044.3	635	Ctt/Gtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577515	7577515	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	292	761	0	ENST00000269305.4:c.766A>C	p.Thr256Pro	p.T256P	ENST00000269305	NM_001126112.2	256	Aca/Cca																																																																															
BARD1	580	MSKCC	GRCh37	2	215645858	215645858	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	17	628	0	ENST00000260947.4:c.740C>G	p.Ser247Cys	p.S247C	ENST00000260947	NM_000465.2	247	tCt/tGt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114905780	114905780	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	36	554	0	ENST00000543371.1:c.799C>G	p.Pro267Ala	p.P267A	ENST00000543371	NM_001198531.1	267	Cca/Gca																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137190	64137191	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0060639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1433	268	912	0	ENST00000334205.4:c.1623dup	p.Thr542HisfsTer95	p.T542Hfs*95	ENST00000334205	NM_003942.2	541	gac/gaCc																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544760	86544760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1099	197	901	0	ENST00000262426.4:c.585G>A	p.Met195Ile	p.M195I	ENST00000262426	NM_001451.2	195	atG/atA																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103727	47103727	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	87	777	0	ENST00000409792.3:c.6219G>C	p.Glu2073Asp	p.E2073D	ENST00000409792	NM_014159.6	2073	gaG/gaC																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681909	30681909	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060639-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	191	785	0	ENST00000376406.3:c.188C>G	p.Ser63Cys	p.S63C	ENST00000376406	NM_014641.2	63	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0060082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			546	604	796	2	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65301111	65301111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370434553		P-0060082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			634	282	537	0	ENST00000342505.4:c.3337C>T	p.Arg1113Cys	p.R1113C	ENST00000342505	NM_002227.2	1113	Cgc/Tgc																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518419	69518419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			386	1534	367	6	ENST00000294312.3:c.226G>A	p.Ala76Thr	p.A76T	ENST00000294312	NM_005117.2	76	Gcg/Acg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099060	27099073	+	frameshift_variant	Frame_Shift_Del	DEL	ACTTAAAGCCACCA	ACTTAAAGCCACCA	-			P-0060082-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1142	229	821	0	ENST00000324856.7:c.3479_3492del	p.Leu1160SerfsTer28	p.L1160Sfs*28	ENST00000324856	NM_006015.4	1159	gACTTAAAGCCACCA/g																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256126	16256126	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	336	700	0	ENST00000375759.3:c.3395del	p.Asn1132ThrfsTer22	p.N1132Tfs*22	ENST00000375759	NM_015001.2	1131	Aaa/aa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257359	16257359	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	228	636	0	ENST00000375759.3:c.4624C>T	p.Arg1542Ter	p.R1542*	ENST00000375759	NM_015001.2	1542	Cga/Tga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1344	89	884	3	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65344833	65344833	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	61	559	0	ENST00000342505.4:c.206-2A>G		p.X69_splice	ENST00000342505	NM_002227.2	69																																																																																
RFWD2	64326	MSKCC	GRCh37	1	176054921	176054921	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138406127		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	65	277	0	ENST00000367669.3:c.1132C>T	p.Arg378Cys	p.R378C	ENST00000367669	NM_022457.5	378	Cgt/Tgt																																																																															
APLNR	187	MSKCC	GRCh37	11	57003485	57003485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			856	412	926	0	ENST00000606794.1:c.994G>A	p.Ala332Thr	p.A332T	ENST00000606794	NM_005161.4	332	Gca/Aca																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127752	64127752	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			949	74	702	0	ENST00000334205.4:c.245del	p.Thr82SerfsTer37	p.T82Sfs*37	ENST00000334205	NM_003942.2	82	aCg/ag																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94201025	94201025	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587780133		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	175	437	0	ENST00000323929.3:c.1052G>A	p.Arg351His	p.R351H	ENST00000323929	NM_005591.3	351	cGt/cAt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307357	118307357	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	32	346	2	ENST00000534358.1:c.134del	p.Pro45ArgfsTer105	p.P45Rfs*105	ENST00000534358	NM_005933.3	44	Ccc/cc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	60	527	2	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	422254	422254	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1448384274		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	40	571	0	ENST00000399788.2:c.3004C>T	p.Arg1002Ter	p.R1002*	ENST00000399788	NM_001042603.1	1002	Cga/Tga																																																																															
CCND2	894	MSKCC	GRCh37	12	4383349	4383351	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			847	463	893	0	ENST00000261254.3:c.145_147del	p.Lys49del	p.K49del	ENST00000261254	NM_001759.3	48	cAGAag/cag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448461	49448461	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748173147		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			896	569	858	1	ENST00000301067.7:c.250C>T	p.Arg84Cys	p.R84C	ENST00000301067	NM_003482.3	84	Cgc/Tgc																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50492779	50492779	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1215265267		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1037	91	638	0	ENST00000394963.4:c.1544C>T	p.Thr515Ile	p.T515I	ENST00000394963	NM_003076.4	515	aCa/aTa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865076	57865076	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462976482		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1245	108	841	0	ENST00000228682.2:c.2557del	p.Gln853SerfsTer93	p.Q853Sfs*93	ENST00000228682	NM_005269.2	851	taC/ta																																																																															
IGF1	3479	MSKCC	GRCh37	12	102869486	102869486	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755265524		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			908	354	650	0	ENST00000307046.8:c.155C>T	p.Thr52Met	p.T52M	ENST00000307046	NM_001111285.1	52	aCg/aTg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26959432	26959432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	197	494	0	ENST00000381527.3:c.599G>A	p.Arg200Gln	p.R200Q	ENST00000381527	NM_001260.1	200	cGa/cAa																																																																															
FLT1	2321	MSKCC	GRCh37	13	29004202	29004202	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137862999		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	307	516	0	ENST00000282397.4:c.1091C>T	p.Ser364Leu	p.S364L	ENST00000282397	NM_002019.4	364	tCg/tTg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355904	73355904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			727	484	747	0	ENST00000377767.4:c.67C>T	p.His23Tyr	p.H23Y	ENST00000377767	NM_014953.3	23	Cac/Tac																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986737	36986737	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			933	88	878	0	ENST00000354822.5:c.952C>T	p.Gln318Ter	p.Q318*	ENST00000354822	NM_001079668.2	318	Cag/Tag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060955	38060955	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			856	393	847	0	ENST00000250448.2:c.1034del	p.Gly345AlafsTer5	p.G345Afs*5	ENST00000250448	NM_004496.3	345	gGc/gc																																																																															
MGA	23269	MSKCC	GRCh37	15	42050032	42050032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	102	313	0	ENST00000219905.7:c.7186C>T	p.Arg2396Ter	p.R2396*	ENST00000219905	NM_001164273.1	2396	Cga/Tga																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43733757	43733757	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	37	467	0	ENST00000382044.4:c.3065del	p.Asn1022MetfsTer20	p.N1022Mfs*20	ENST00000382044	NM_001141980.1	1022	aAt/at																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457615	67457615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			905	610	925	1	ENST00000327367.4:c.425G>A	p.Arg142His	p.R142H	ENST00000327367	NM_005902.3	142	cGc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786719	3786719	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1011	121	719	0	ENST00000262367.5:c.4492C>T	p.Arg1498Ter	p.R1498*	ENST00000262367	NM_004380.2	1498	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900384	3900384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146887252		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			890	459	833	0	ENST00000262367.5:c.712G>A	p.Val238Met	p.V238M	ENST00000262367	NM_004380.2	238	Gtg/Atg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857251	9857252	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1029	248	811	0	ENST00000330684.3:c.4149dup	p.Ser1384LeufsTer15	p.S1384Lfs*15	ENST00000330684	NM_001134407.1	1383	-/C																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30129719	30129719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			729	604	760	0	ENST00000263025.4:c.494G>A	p.Arg165Gln	p.R165Q	ENST00000263025	NM_002746.2	165	cGa/cAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			881	509	916	3	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984590	72984591	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			901	546	878	0	ENST00000268489.5:c.2993dup	p.Asn998LysfsTer49	p.N998Kfs*49	ENST00000268489	NM_006885.3	998	aac/aaAc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81929516	81929516	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760949449		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			770	511	688	0	ENST00000359376.3:c.1177G>A	p.Ala393Thr	p.A393T	ENST00000359376	NM_002661.3	393	Gcc/Acc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81973542	81973542	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	379	635	0	ENST00000359376.3:c.3359T>C	p.Val1120Ala	p.V1120A	ENST00000359376	NM_002661.3	1120	gTg/gCg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346113	89346114	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	168	531	0	ENST00000301030.4:c.6836_6837del	p.Val2279GlyfsTer16	p.V2279Gfs*16	ENST00000301030	NM_001256183.1	2279	gTG/g																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347172	89347173	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1290	122	954	0	ENST00000301030.4:c.5777dup	p.Glu1927GlyfsTer23	p.E1927Gfs*23	ENST00000301030	NM_001256183.1	1926	ccg/ccCg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347713	89347713	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs561668093		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			962	648	948	2	ENST00000301030.4:c.5237C>T	p.Thr1746Met	p.T1746M	ENST00000301030	NM_001256183.1	1746	aCg/aTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347788	89347788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			771	589	881	2	ENST00000301030.4:c.5162C>T	p.Thr1721Met	p.T1721M	ENST00000301030	NM_001256183.1	1721	aCg/aTg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8109821	8109821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	470	682	0	ENST00000585124.1:c.674C>T	p.Ala225Val	p.A225V	ENST00000585124	NM_004217.3	225	gCg/gTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16012211	16012211	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1391053845		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	144	413	0	ENST00000268712.3:c.2071C>T	p.Arg691Cys	p.R691C	ENST00000268712	NM_006311.3	691	Cgt/Tgt																																																																															
NF1	4763	MSKCC	GRCh37	17	29670055	29670055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	160	377	0	ENST00000358273.4:c.7091G>A	p.Arg2364Gln	p.R2364Q	ENST00000358273	NM_001042492.2	2364	cGg/cAg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37680973	37680973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs764290780		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			836	394	762	0	ENST00000447079.4:c.3142C>T	p.Arg1048Ter	p.R1048*	ENST00000447079	NM_015083.1	1048	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			987	636	1066	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492796	56492798	+	inframe_deletion	In_Frame_Del	DEL	ATA	ATA	-			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	447	697	0	ENST00000407977.2:c.141_143del	p.Ile48del	p.I48del	ENST00000407977		47	atTATc/atc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395805	45395805	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	69	506	0	ENST00000262160.6:c.329C>A	p.Ser110Tyr	p.S110Y	ENST00000262160	NM_005901.5	110	tCt/tAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220135	5220135	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1269111261		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			705	499	825	0	ENST00000357368.4:c.3580C>T	p.Arg1194Cys	p.R1194C	ENST00000357368	NM_002850.3	1194	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221161	5221161	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs575201235		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			889	590	910	0	ENST00000357368.4:c.3305G>A	p.Arg1102His	p.R1102H	ENST00000357368	NM_002850.3	1102	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238958	5238958	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1229	89	775	0	ENST00000357368.4:c.1821del	p.Val608TrpfsTer30	p.V608Wfs*30	ENST00000357368	NM_002850.3	607	ccC/cc																																																																															
CARM1	10498	MSKCC	GRCh37	19	10982398	10982398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			442	309	346	1	ENST00000327064.4:c.20C>T	p.Ala7Val	p.A7V	ENST00000327064	NM_199141.1	7	gCg/gTg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11022923	11022923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			780	545	752	0	ENST00000327064.4:c.622C>T	p.Arg208Trp	p.R208W	ENST00000327064	NM_199141.1	208	Cgg/Tgg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19258532	19258532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754381519		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1353	102	939	0	ENST00000162023.5:c.368C>T	p.Pro123Leu	p.P123L	ENST00000162023		123	cCg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223613	36223614	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765758919		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1419	158	1089	2	ENST00000222270.7:c.6169dup	p.Arg2057ProfsTer3	p.R2057Pfs*3	ENST00000222270	NM_014727.1	2055	gcc/gCcc																																																																															
ERF	2077	MSKCC	GRCh37	19	42752805	42752805	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767131852		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			918	402	975	0	ENST00000222329.4:c.1459C>T	p.Arg487Cys	p.R487C	ENST00000222329	NM_006494.2	487	Cgc/Tgc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906366	50906366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762494977		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			911	431	864	1	ENST00000440232.2:c.1027C>T	p.Arg343Cys	p.R343C	ENST00000440232	NM_002691.3	343	Cgc/Tgc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919000	50919000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1070	113	694	0	ENST00000440232.2:c.2737G>A	p.Gly913Arg	p.G913R	ENST00000440232	NM_002691.3	913	Ggg/Agg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182542	99182542	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1200	92	789	0	ENST00000074304.5:c.2345T>C	p.Leu782Ser	p.L782S	ENST00000074304	NM_001134224.1	782	tTg/tCg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182598	99182598	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1253335546		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1190	134	840	0	ENST00000074304.5:c.2401G>A	p.Val801Met	p.V801M	ENST00000074304	NM_001134224.1	801	Gtg/Atg																																																																															
ACVR1	90	MSKCC	GRCh37	2	158594062	158594062	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	205	517	0	ENST00000263640.3:c.1511A>G	p.Lys504Arg	p.K504R	ENST00000263640	NM_001105.4	504	aAa/aGa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662055	227662055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			781	575	868	0	ENST00000305123.5:c.1400G>A	p.Cys467Tyr	p.C467Y	ENST00000305123	NM_005544.2	467	tGc/tAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1002	453	877	12	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259367	36259367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			756	497	751	0	ENST00000300305.3:c.124C>T	p.Pro42Ser	p.P42S	ENST00000300305		42	Ccg/Tcg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24145549	24145549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1318	130	795	0	ENST00000263121.7:c.568C>T	p.Arg190Trp	p.R190W	ENST00000263121	NM_003073.3	190	Cgg/Tgg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713612	30713612	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55751315		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			916	172	785	1	ENST00000359013.4:c.1012C>T	p.Arg338Trp	p.R338W	ENST00000359013	NM_001024847.2	338	Cgg/Tgg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934216	49934216	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			830	612	922	0	ENST00000296474.3:c.2291T>C	p.Phe764Ser	p.F764S	ENST00000296474	NM_002447.2	764	tTc/tCc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119631641	119631641	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	116	476	0	ENST00000316626.5:c.625C>T	p.Arg209Ter	p.R209*	ENST00000316626		209	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851708	134851708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1134	214	767	0	ENST00000398015.3:c.1114C>T	p.Arg372Cys	p.R372C	ENST00000398015	NM_004441.4	372	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	101	562	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TERT	7015	MSKCC	GRCh37	5	1294282	1294282	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751231538		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	506	856	0	ENST00000310581.5:c.719G>A	p.Arg240His	p.R240H	ENST00000310581	NM_198253.2	240	cGt/cAt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177584	56177584	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368201444		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	389	651	1	ENST00000399503.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000399503	NM_005921.1	853	Cgt/Tgt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	69	348	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931452	131931452	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772667708		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	337	530	12	ENST00000265335.6:c.2165del	p.Lys722ArgfsTer14	p.K722Rfs*14	ENST00000265335		719	ctA/ct																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149456908	149456908	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758675858		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1031	594	904	0	ENST00000286301.3:c.820G>A	p.Gly274Ser	p.G274S	ENST00000286301	NM_005211.3	274	Ggc/Agc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562218	176562218	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			977	102	729	0	ENST00000439151.2:c.118del	p.Ser40LeufsTer42	p.S40Lfs*42	ENST00000439151	NM_022455.4	38	aaT/aa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707572	176707572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	275	612	1	ENST00000439151.2:c.5629C>T	p.Arg1877Cys	p.R1877C	ENST00000439151	NM_022455.4	1877	Cgt/Tgt																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225563	26225565	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1352	108	913	0	ENST00000360408.1:c.183_185del	p.Leu62del	p.L62del	ENST00000360408	NM_003532.2	61	CTT/-																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790908	89790910	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs746966684		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			788	320	835	0	ENST00000336032.3:c.301_303del	p.Lys101del	p.K101del	ENST00000336032	NM_006813.2	99	AAG/-																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519505	137519506	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs780346130		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	259	714	5	ENST00000367739.4:c.1132_1133del	p.Ser378PhefsTer6	p.S378Ffs*6	ENST00000367739	NM_000416.2	378	AGt/t																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196029	138196029	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150717698		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			807	377	734	0	ENST00000237289.4:c.343G>A	p.Val115Ile	p.V115I	ENST00000237289	NM_001270507.1	115	Gtt/Att																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129338	152129338	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1361952517		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	421	767	1	ENST00000206249.3:c.296del	p.Pro99HisfsTer10	p.P99Hfs*10	ENST00000206249	NM_000125.3	97	ttC/tt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			771	401	760	5	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
MET	4233	MSKCC	GRCh37	7	116422048	116422048	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	125	309	0	ENST00000397752.3:c.3529A>G	p.Thr1177Ala	p.T1177A	ENST00000397752	NM_000245.2	1177	Act/Gct																																																																															
PREX2	80243	MSKCC	GRCh37	8	68930111	68930111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	352	542	0	ENST00000288368.4:c.172G>T	p.Ala58Ser	p.A58S	ENST00000288368	NM_024870.2	58	Gca/Tca																																																																															
AGO2	27161	MSKCC	GRCh37	8	141561430	141561430	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1673	104	930	0	ENST00000220592.5:c.1375del	p.Gln459SerfsTer9	p.Q459Sfs*9	ENST00000220592	NM_012154.3	459	Cag/ag																																																																															
JAK2	3717	MSKCC	GRCh37	9	5065000	5065000	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200018153		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	122	466	0	ENST00000381652.3:c.1174G>A	p.Val392Met	p.V392M	ENST00000381652	NM_004972.3	392	Gtg/Atg																																																																															
ABL1	25	MSKCC	GRCh37	9	133753871	133753871	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	762	610	0	ENST00000318560.5:c.1340A>G	p.Gln447Arg	p.Q447R	ENST00000318560	NM_005157.4	447	cAg/cGg																																																																															
MED12	9968	MSKCC	GRCh37	X	70360647	70360648	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAG	rs1408871869		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	292	253	0	ENST00000374080.3:c.6226_6228dup	p.Gln2076dup	p.Q2076dup	ENST00000374080		2076	-/CAG																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152857987	152857987	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146203325		P-0060405-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	361	396	0	ENST00000406277.2:c.628G>A	p.Glu210Lys	p.E210K	ENST00000406277	NM_152274.4	210	Gag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108115628	108115628	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	46	420	0	ENST00000278616.4:c.776T>G	p.Leu259Arg	p.L259R	ENST00000278616	NM_000051.3	259	cTt/cGt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121599	2121599	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	89	722	0	ENST00000219476.3:c.1928A>G	p.Tyr643Cys	p.Y643C	ENST00000219476	NM_000548.3	643	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579531	7579543	+	frameshift_variant	Frame_Shift_Del	DEL	TTGTTCAATATCG	TTGTTCAATATCG	-			P-0060406-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	133	860	0	ENST00000269305.4:c.144_156del	p.Asp49GlyfsTer70	p.D49Gfs*70	ENST00000269305	NM_001126112.2	48	gaCGATATTGAACAA/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0060408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	131	758	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																															
ALK	238	MSKCC	GRCh37	2	29443576	29443576	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750194005		P-0060408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	46	723	1	ENST00000389048.3:c.3641G>A	p.Arg1214His	p.R1214H	ENST00000389048	NM_004304.4	1214	cGc/cAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024395	31024399	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAG	CAGAG	-			P-0060408-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	48	737	0	ENST00000375687.4:c.3882_3886del	p.Ser1295CysfsTer32	p.S1295Cfs*32	ENST00000375687	NM_015338.5	1294	CAGAGc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0060409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			633	37	990	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0060409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	15	516	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	516	1119	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	891	958	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202185	138202185	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775745583		P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			846	45	920	1	ENST00000237289.4:c.2102G>A	p.Arg701His	p.R701H	ENST00000237289	NM_001270507.1	701	cGc/cAc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56490980	56490980	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			554	445	1045	0	ENST00000267101.3:c.2426A>G	p.Gln809Arg	p.Q809R	ENST00000267101	NM_001982.3	809	cAg/cGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519936		P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	727	472	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	334	1146	10	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	372	1199	11	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176354	24176354	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			724	43	781	0	ENST00000263121.7:c.1148del	p.Pro383ArgfsTer100	p.P383Rfs*100	ENST00000263121	NM_003073.3	382	gCc/gc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139804418	139804418	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746259933		P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			779	41	829	0	ENST00000247668.2:c.575G>A	p.Cys192Tyr	p.C192Y	ENST00000247668	NM_021138.3	192	tGc/tAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274304	5274304	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	392	1025	3	ENST00000357368.4:c.143del	p.Gly48ValfsTer17	p.G48Vfs*17	ENST00000357368	NM_002850.3	48	gGt/gt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939260	71939260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	461	1178	2	ENST00000298229.2:c.209G>A	p.Arg70His	p.R70H	ENST00000298229	NM_001567.3	70	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			715	382	1179	2	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148506170	148506171	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	249	610	0	ENST00000320356.2:c.2187dup	p.Asp730Ter	p.D730*	ENST00000320356	NM_004456.4	729	-/T																																																																															
WT1	7490	MSKCC	GRCh37	11	32438072	32438072	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	415	829	0	ENST00000332351.3:c.965G>T	p.Ser322Ile	p.S322I	ENST00000332351	NM_024426.4	322	aGc/aTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133252024	133252024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	405	1000	0	ENST00000320574.5:c.1186del	p.Glu396SerfsTer16	p.E396Sfs*16	ENST00000320574	NM_006231.2	396	Gag/ag																																																																															
SMYD3	64754	MSKCC	GRCh37	1	245912885	245912885	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374803671		P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	275	713	0	ENST00000388985.4:c.1267G>A	p.Ala423Thr	p.A423T	ENST00000388985		423	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210907	36210907	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770426704		P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	516	1249	3	ENST00000222270.7:c.658C>T	p.Arg220Trp	p.R220W	ENST00000222270	NM_014727.1	220	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057831	27057832	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			787	633	1262	0	ENST00000324856.7:c.1542_1543del	p.Gln515AlafsTer107	p.Q515Afs*107	ENST00000324856	NM_006015.4	513	tcCTct/tcct																																																																															
ERG	2078	MSKCC	GRCh37	21	39755717	39755717	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1333152977		P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	354	1010	2	ENST00000288319.7:c.1048C>T	p.Arg350Cys	p.R350C	ENST00000288319	NM_182918.3	350	Cgc/Tgc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898360	63898361	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	157	737	0	ENST00000398590.3:c.116_118dup	p.Gln39dup	p.Q39dup	ENST00000398590	NM_001177387.1	39	cgg/cgGCAg																																																																															
GNB1	2782	MSKCC	GRCh37	1	1736014	1736014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	355	832	2	ENST00000378609.4:c.274G>A	p.Ala92Thr	p.A92T	ENST00000378609	NM_002074.3	92	Gcc/Acc																																																																															
USP8	9101	MSKCC	GRCh37	15	50733661	50733661	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	41	232	0	ENST00000433963.1:c.226del	p.Arg76AspfsTer36	p.R76Dfs*36	ENST00000433963	NM_001128611.1	74	Aaa/aa																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379703	17379703	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	497	1027	0	ENST00000359435.4:c.88A>G	p.Asn30Asp	p.N30D	ENST00000359435	NM_001033549.1	30	Aat/Gat																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500558	149500558	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	428	1037	1	ENST00000261799.4:c.2479C>A	p.Leu827Met	p.L827M	ENST00000261799	NM_002609.3	827	Ctg/Atg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165247	32165247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	468	1153	0	ENST00000375023.3:c.4881G>T	p.Gln1627His	p.Q1627H	ENST00000375023	NM_004557.3	1627	caG/caT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55229230	55229230	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754646330		P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	347	1042	2	ENST00000275493.2:c.1537G>A	p.Glu513Lys	p.E513K	ENST00000275493	NM_005228.3	513	Gag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873523	151873523	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026660-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	371	959	0	ENST00000262189.6:c.9015del	p.Thr3006GlnfsTer26	p.T3006Qfs*26	ENST00000262189	NM_170606.2	3005	ggG/gg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0050683-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			538	75	557	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0050683-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			1002	88	924	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123260405	123260405	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050683-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			740	59	775	0	ENST00000358487.5:c.1496A>C	p.Glu499Ala	p.E499A	ENST00000358487	NM_000141.4	499	gAa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0058926-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			199	356	455	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981163	201981165	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0058926-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			252	515	498	0	ENST00000359651.3:c.246_248del	p.Lys82del	p.K82del	ENST00000359651		81	gAGAag/gag																																																																															
CARM1	10498	MSKCC	GRCh37	19	11024613	11024613	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058926-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			944	123	560	0	ENST00000327064.4:c.730G>T	p.Glu244Ter	p.E244*	ENST00000327064	NM_199141.1	244	Gag/Tag																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032221	26032221	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058926-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1131	292	631	0	ENST00000244661.2:c.68C>G	p.Thr23Ser	p.T23S	ENST00000244661	NM_003537.3	23	aCc/aGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0060394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	255	393	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs942158624		P-0060394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	488	700	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78858883	78858883	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0060394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			3190	173	657	0	ENST00000306801.3:c.1918A>C	p.Ile640Leu	p.I640L	ENST00000306801	NM_020761.2	640	Atc/Ctc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252852	36252853	+	splice_donor_variant	Splice_Site	INS	-	-	CCT			P-0060394-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	311	411	0	ENST00000300305.3:c.507_508+1dup		p.X169_splice	ENST00000300305		169																																																																																
AKT2	208	MSKCC	GRCh37	19	40762959	40762959	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs387906659		P-0060403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	318	806	0	ENST00000392038.2:c.49G>A	p.Glu17Lys	p.E17K	ENST00000392038	NM_001626.4	17	Gaa/Aaa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439883	52439883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0060403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	393	792	0	ENST00000460680.1:c.829C>T	p.Gln277Ter	p.Q277*	ENST00000460680	NM_004656.3	277	Caa/Taa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370942	55370942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	298	834	0	ENST00000297316.4:c.244G>A	p.Glu82Lys	p.E82K	ENST00000297316	NM_022454.3	82	Gag/Aag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504326	8504326	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1349236329		P-0060403-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			627	116	663	0	ENST00000356435.5:c.1757C>T	p.Ala586Val	p.A586V	ENST00000356435		586	gCt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0060410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	724	1064	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5208335	5208335	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148478353		P-0060410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			791	594	775	0	ENST00000357368.4:c.5555C>T	p.Ser1852Leu	p.S1852L	ENST00000357368	NM_002850.3	1852	tCg/tTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281281	15281281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776163983		P-0060410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	616	998	0	ENST00000263388.2:c.4975G>A	p.Val1659Ile	p.V1659I	ENST00000263388	NM_000435.2	1659	Gtc/Atc																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480543	50480543	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147034181		P-0060410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	160	545	2	ENST00000394963.4:c.413G>A	p.Arg138His	p.R138H	ENST00000394963	NM_003076.4	138	cGt/cAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130337	11130337	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs281875226		P-0060410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	449	701	0	ENST00000358026.2:c.2576C>T	p.Thr859Met	p.T859M	ENST00000358026	NM_001128849.1	859	aCg/aTg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117724319	117724319	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	205	655	0	ENST00000368508.3:c.560G>T	p.Arg187Met	p.R187M	ENST00000368508	NM_002944.2	187	aGg/aTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033223	69033245	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTTGGAATCTTCCCAGCAGCG	TCCTTGGAATCTTCCCAGCAGCG	-			P-0060410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			750	58	546	0	ENST00000288368.4:c.3666_3688del	p.Trp1223AspfsTer11	p.W1223Dfs*11	ENST00000288368	NM_024870.2	1221	gaTCCTTGGAATCTTCCCAGCAGCGtc/gatc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223572	53223572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060410-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	502	432	0	ENST00000375401.3:c.3787G>A	p.Val1263Ile	p.V1263I	ENST00000375401	NM_004187.3	1263	Gta/Ata																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0060412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			916	95	719	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0060412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			970	86	778	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249028	55249028	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1275022697		P-0060412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1008	78	836	0	ENST00000275493.2:c.2326C>T	p.Arg776Cys	p.R776C	ENST00000275493	NM_005228.3	776	Cgc/Tgc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521926	157521926	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0060412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1084	92	851	1	ENST00000346085.5:c.4198C>T	p.Gln1400Ter	p.Q1400*	ENST00000346085	NM_020732.3	1400	Cag/Tag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851816	63851816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			974	70	774	0	ENST00000279873.7:c.2594C>T	p.Ser865Leu	p.S865L	ENST00000279873	NM_032199.2	865	tCg/tTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140500253	140500253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1116	84	664	0	ENST00000288602.6:c.889C>T	p.His297Tyr	p.H297Y	ENST00000288602	NM_004333.4	297	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578500	7578510	+	frameshift_variant	Frame_Shift_Del	DEL	GCACAGGGCAG	GCACAGGGCAG	-			P-0058935-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			702	111	791	0	ENST00000269305.4:c.420_430del	p.Cys141AlafsTer4	p.C141Afs*4	ENST00000269305	NM_001126112.2	140	acCTGCCCTGTGCag/acag																																																																															
ATRX	546	MSKCC	GRCh37	X	76813090	76813090	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058935-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			416	71	440	0	ENST00000373344.5:c.6531T>G	p.Asp2177Glu	p.D2177E	ENST00000373344	NM_000489.3	2177	gaT/gaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577573	7577573	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0059243-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			631	14	655	0	ENST00000269305.4:c.708C>A	p.Tyr236Ter	p.Y236*	ENST00000269305	NM_001126112.2	236	taC/taA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934574		P-0059970-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	503	817	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910647	29910647	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs199474387		P-0059970-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1620	226	1275	0	ENST00000376809.5:c.187G>T	p.Asp63Tyr	p.D63Y	ENST00000376809	NM_002116.7	63	Gac/Tac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8331617	8331617	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059970-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1028	160	610	1	ENST00000356435.5:c.5499G>T	p.Gln1833His	p.Q1833H	ENST00000356435		1833	caG/caT																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150915530	150915530	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0059970-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1356	187	666	0	ENST00000271640.5:c.875+1G>T		p.X292_splice	ENST00000271640	NM_001145415.1	292																																																																																
RFWD2	64326	MSKCC	GRCh37	1	176153824	176153885	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGGGCTAAAAAGAAAAGAAAAATAATTGATTTTTTTTTAAAAGTAGAGTGATTACAAATTG	TGGGGCTAAAAAGAAAAGAAAAATAATTGATTTTTTTTTAAAAGTAGAGTGATTACAAATTG	-			P-0059970-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	24	231	0	ENST00000367669.3:c.408-57_412del		p.X136_splice	ENST00000367669	NM_022457.5	136																																																																																
NF1	4763	MSKCC	GRCh37	17	29559729	29559729	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059970-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	133	518	0	ENST00000358273.4:c.3326T>C	p.Leu1109Ser	p.L1109S	ENST00000358273	NM_001042492.2	1109	tTa/tCa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519969		P-0060365-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	194	517	0	ENST00000347630.2:c.392G>C	p.Trp131Ser	p.W131S	ENST00000347630	NM_001007230.1	131	tGg/tCg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117731	70117731	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1182522222		P-0060365-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	298	864	0	ENST00000245479.2:c.199G>A	p.Asp67Asn	p.D67N	ENST00000245479	NM_000346.3	67	Gac/Aac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44935974	44935974	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0060365-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	94	124	0	ENST00000377967.4:c.2735del	p.Ser912ThrfsTer25	p.S912Tfs*25	ENST00000377967	NM_021140.2	912	aGc/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578389	7578390	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0060370-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			802	160	779	0	ENST00000269305.4:c.539_540dup	p.Arg181SerfsTer67	p.R181Sfs*67	ENST00000269305	NM_001126112.2	180	-/AG																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711017	114711017	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0060370-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	71	344	0	ENST00000543371.1:c.241G>T	p.Glu81Ter	p.E81*	ENST00000543371	NM_001198531.1	81	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0060370-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	83	359	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112174782	112174782	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0060370-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	91	275	0	ENST00000257430.4:c.3491del	p.Ile1164LysfsTer18	p.I1164Kfs*18	ENST00000257430	NM_000038.5	1164	aTa/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0060372-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	174	437	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0060377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	237	505	0	ENST00000347630.2:c.304T>A	p.Phe102Ile	p.F102I	ENST00000347630	NM_001007230.1	102	Ttc/Atc																																																																															
AKT1	207	MSKCC	GRCh37	14	105239419	105239419	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060377-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1287	82	891	0	ENST00000349310.3:c.968A>C	p.Asp323Ala	p.D323A	ENST00000349310	NM_001014432.1	323	gAc/gCc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420312	88420312	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060386-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			854	257	781	0	ENST00000360948.2:c.2374C>G	p.Pro792Ala	p.P792A	ENST00000360948	NM_001012338.2	792	Ccc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0059714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	57	508	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
MPL	4352	MSKCC	GRCh37	1	43812293	43812293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	36	494	0	ENST00000372470.3:c.1158C>A	p.His386Gln	p.H386Q	ENST00000372470	NM_005373.2	386	caC/caA																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912345	32912346	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs901733203		P-0059714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			123	19	337	0	ENST00000380152.3:c.3860dup	p.Asn1287LysfsTer2	p.N1287Kfs*2	ENST00000380152		1285	gaa/gAaa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16012193	16012194	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	G			P-0059714-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	88	356	0	ENST00000268712.3:c.2088_2089delinsC	p.Ser697LeufsTer71	p.S697Lfs*71	ENST00000268712	NM_006311.3	696	gtGTct/gtCct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0059971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	295	777	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133268	38133268	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770152981		P-0059971-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			671	233	675	0	ENST00000317025.8:c.4205G>A	p.Arg1402His	p.R1402H	ENST00000317025	NM_023034.1	1402	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0060263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	257	735	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736302	243736302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	382	477	0	ENST00000263826.5:c.745C>A	p.Arg249Ser	p.R249S	ENST00000263826	NM_005465.4	249	Cgt/Agt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135778026	135778026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	212	513	0	ENST00000298552.3:c.2357G>T	p.Arg786Leu	p.R786L	ENST00000298552	NM_001162426.1	786	cGa/cTa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260029	16260029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			712	107	707	0	ENST00000375759.3:c.7294C>T	p.Pro2432Ser	p.P2432S	ENST00000375759	NM_015001.2	2432	Ccc/Tcc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260156	16260156	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			748	106	655	0	ENST00000375759.3:c.7421C>G	p.Ser2474Cys	p.S2474C	ENST00000375759	NM_015001.2	2474	tCt/tGt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432197	121432208	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GTAAGGTCCACG	GTAAGGTCCACG	-			P-0060263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	177	576	0	ENST00000257555.6:c.949_955+5del		p.SKVHGdel	ENST00000257555		315	aGTAAGGTCCACGgt/agt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375557	15375557	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	240	629	0	ENST00000263377.2:c.870G>C	p.Arg290Ser	p.R290S	ENST00000263377	NM_058243.2	290	agG/agC																																																																															
CASP8	841	MSKCC	GRCh37	2	202131234	202131234	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060263-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	68	507	0	ENST00000358485.4:c.202G>C	p.Asp68His	p.D68H	ENST00000358485	NM_001080125.1	68	Gat/Cat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0060303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	118	318	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ATM	472	MSKCC	GRCh37	11	108186742	108186742	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs532480170		P-0060303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	54	328	0	ENST00000278616.4:c.6100C>T	p.Arg2034Ter	p.R2034*	ENST00000278616	NM_000051.3	2034	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023943	27023943	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0060303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	54	402	0	ENST00000324856.7:c.1049C>A	p.Ser350Ter	p.S350*	ENST00000324856	NM_006015.4	350	tCg/tAg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027008	71027008	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0060303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	74	452	0	ENST00000318789.4:c.1319C>G	p.Ser440Ter	p.S440*	ENST00000318789	NM_032682.5	440	tCa/tGa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47088054	47088054	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	31	334	0	ENST00000409792.3:c.7021C>A	p.Pro2341Thr	p.P2341T	ENST00000409792	NM_014159.6	2341	Cca/Aca																																																																															
IL7R	3575	MSKCC	GRCh37	5	35875669	35875669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	35	302	0	ENST00000303115.3:c.856C>A	p.Leu286Ile	p.L286I	ENST00000303115	NM_002185.3	286	Ctt/Att																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877065	151877065	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060303-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	42	405	1	ENST00000262189.6:c.7296C>A	p.Phe2432Leu	p.F2432L	ENST00000262189	NM_170606.2	2432	ttC/ttA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0060309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	10	367	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730137	41730137	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764280388		P-0060309-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	29	314	0	ENST00000242208.4:c.392C>T	p.Thr131Ile	p.T131I	ENST00000242208	NM_002192.2	131	aCa/aTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0060134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	120	396	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045115	47045115	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0060134-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	170	743	0	ENST00000329236.7:c.2122C>T	p.Gln708Ter	p.Q708*	ENST00000329236	NM_001204466.1	708	Caa/Taa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0060228-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	198	359	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0060228-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	286	409	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
CBL	867	MSKCC	GRCh37	11	119149246	119149246	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060228-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	133	473	0	ENST00000264033.4:c.1254C>A	p.Phe418Leu	p.F418L	ENST00000264033	NM_005188.3	418	ttC/ttA																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790072	40790072	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61753667		P-0060228-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	583	489	1	ENST00000373198.4:c.2659G>A	p.Ala887Thr	p.A887T	ENST00000373198	NM_133170.3	887	Gcc/Acc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492797	56492798	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0060228-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	397	562	0	ENST00000407977.2:c.141dup	p.Ile48TyrfsTer27	p.I48Yfs*27	ENST00000407977		47	-/T																																																																															
CARM1	10498	MSKCC	GRCh37	19	11032290	11032290	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0060228-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	276	532	0	ENST00000327064.4:c.1685-1G>A		p.X562_splice	ENST00000327064	NM_199141.1	562																																																																																
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782664		P-0060233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	149	430	0	ENST00000269305.4:c.711G>C	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atC																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267384	198267384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			828	380	495	0	ENST00000335508.6:c.1973G>T	p.Trp658Leu	p.W658L	ENST00000335508	NM_012433.2	658	tGg/tTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399291	139399302	+	inframe_deletion	In_Frame_Del	DEL	GGAAGATCATCT	GGAAGATCATCT	-			P-0060233-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			723	688	604	0	ENST00000277541.6:c.4841_4852del	p.Gln1614_Phe1617del	p.Q1614_F1617del	ENST00000277541	NM_017617.3	1614	cAGATGATCTTCCcc/ccc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0060108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	23	360	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0060108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	178	523	0	ENST00000269305.4:c.686_687del	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974721	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	188	699	3	ENST00000304494.5:c.106del	p.Ala36ArgfsTer17	p.A36Rfs*17	ENST00000304494	NM_000077.4	36	Gcg/cg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730916	40730916	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765075213		P-0060108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			785	169	600	0	ENST00000373198.4:c.3619C>T	p.Arg1207Cys	p.R1207C	ENST00000373198	NM_133170.3	1207	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023216	27023222	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCCTA	GGCCCTA	-			P-0060108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			738	160	558	0	ENST00000324856.7:c.327_333del	p.Arg110ProfsTer2	p.R110Pfs*2	ENST00000324856	NM_006015.4	108	GGCCCTAgg/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0060108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	121	306	0	ENST00000256078.4:c.34_35delinsCT	p.Gly12Leu	p.G12L	ENST00000256078	NM_033360.2	12	GGt/CTt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311664	15311688	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCGACATCGGGCGACGGCGGC	GGCGGCGACATCGGGCGACGGCGGC	-			P-0060108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1157	247	1009	0	ENST00000263388.2:c.29_53del	p.Arg10HisfsTer16	p.R10Hfs*16	ENST00000263388	NM_000435.2	10	cGCCGCCGTCGCCCGATGTCGCCGCCa/ca																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729094	66729099	+	inframe_deletion	In_Frame_Del	DEL	TGGAGA	TGGAGA	-			P-0060135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	67	511	0	ENST00000307102.5:c.303_308del	p.Glu102_Ile103del	p.E102_I103del	ENST00000307102	NM_002755.3	101	cTGGAGAtc/ctc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11186791	11186791	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060135-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	75	461	0	ENST00000361445.4:c.6414G>C	p.Leu2138Phe	p.L2138F	ENST00000361445	NM_004958.3	2138	ttG/ttC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0060283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	254	587	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731475	47731475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	106	569	0	ENST00000449228.1:c.317C>T	p.Pro106Leu	p.P106L	ENST00000449228	NM_001127240.2	106	cCt/cTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265880	41266334	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGT	TTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGT	-			P-0060283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			31	94	91	0	ENST00000349496.5:c.14-136_241+91del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66356095	66356095	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0060283-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	71	378	0	ENST00000273854.3:c.1402G>A	p.Ala468Thr	p.A468T	ENST00000273854	NM_004439.5	468	Gct/Act																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057874	27057874	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	203	973	0	ENST00000324856.7:c.1582C>T	p.Gln528Ter	p.Q528*	ENST00000324856	NM_006015.4	528	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023948	27023948	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	91	837	0	ENST00000324856.7:c.1057del	p.Ala353ProfsTer10	p.A353Pfs*10	ENST00000324856	NM_006015.4	352	Ggg/gg																																																																															
CDH1	999	MSKCC	GRCh37	16	68863605	68863612	+	frameshift_variant	Frame_Shift_Del	DEL	GTGACTCG	GTGACTCG	A			P-0050374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	127	723	0	ENST00000261769.5:c.2344_2351delinsA	p.Val782IlefsTer9	p.V782Ifs*9	ENST00000261769	NM_004360.3	782	GTGACTCGt/At																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0059525-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			705	41	718	0				ENST00000310581	NM_198253.2																																																																																	
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059525-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			608	43	575	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																															
HRAS	3265	MSKCC	GRCh37	11	534287	534288	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0059525-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			791	58	775	0	ENST00000311189.7:c.35_36delinsTT	p.Gly12Val	p.G12V	ENST00000311189		12	gGC/gTT																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43707902	43707903	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0059525-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			878	49	837	0	ENST00000382044.4:c.4978_4979del	p.Glu1660LysfsTer19	p.E1660Kfs*19	ENST00000382044	NM_001141980.1	1660	GAa/a																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939112	36939112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059985-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	21	464	0	ENST00000361632.4:c.597G>A	p.Met199Ile	p.M199I	ENST00000361632		199	atG/atA																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625347	69625347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059985-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	27	423	0	ENST00000334134.2:c.446C>T	p.Ala149Val	p.A149V	ENST00000334134	NM_005247.2	149	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0059985-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	207	460	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0059985-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	11	177	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PARK2	5071	MSKCC	GRCh37	6	161771188	161771188	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059985-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	88	292	0	ENST00000366898.1:c.1341G>C	p.Trp447Cys	p.W447C	ENST00000366898	NM_004562.2	447	tgG/tgC																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026970	6026970	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059985-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			32	27	82	0	ENST00000265849.7:c.1426A>T	p.Ser476Cys	p.S476C	ENST00000265849	NM_000535.5	476	Agt/Tgt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450288	50450288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059985-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	28	368	0	ENST00000331340.3:c.472G>T	p.Gly158Cys	p.G158C	ENST00000331340	NM_006060.4	158	Ggc/Tgc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146069	38146099	+	frameshift_variant	Frame_Shift_Del	DEL	TCAGGGTATAGTCTCTTTGTAAAGCACTGGT	TCAGGGTATAGTCTCTTTGTAAAGCACTGGT	-			P-0059985-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	31	330	0	ENST00000317025.8:c.3407_3437del	p.Asn1136MetfsTer26	p.N1136Mfs*26	ENST00000317025	NM_023034.1	1136	aACCAGTGCTTTACAAAGAGACTATACCCTGAt/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7577530	7577530	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0060075-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			183	62	561	0	ENST00000269305.4:c.751A>T	p.Ile251Phe	p.I251F	ENST00000269305	NM_001126112.2	251	Atc/Ttc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971194	21971194	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs561034503		P-0060075-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			255	86	696	0	ENST00000304494.5:c.164G>A	p.Gly55Asp	p.G55D	ENST00000304494	NM_000077.4	55	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0060075-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			193	50	353	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578441	7578441	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0060076-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			276	182	795	0	ENST00000269305.4:c.489C>G	p.Tyr163Ter	p.Y163*	ENST00000269305	NM_001126112.2	163	taC/taG																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246040	41246044	+	frameshift_variant	Frame_Shift_Del	DEL	TTTAA	TTTAA	-	rs80357888		P-0060076-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			231	181	512	0	ENST00000357654.3:c.1504_1508del	p.Leu502AlafsTer2	p.L502Afs*2	ENST00000357654	NM_007294.3	502	TTAAAg/g																																																																															
AKT1	207	MSKCC	GRCh37	14	105239815	105239815	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1167819752		P-0060076-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			244	57	745	0	ENST00000349310.3:c.805A>G	p.Asn269Asp	p.N269D	ENST00000349310	NM_001014432.1	269	Aac/Gac																																																																															
XIAP	331	MSKCC	GRCh37	X	123020256	123020256	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060076-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			106	50	503	0	ENST00000355640.3:c.744G>T	p.Arg248Ser	p.R248S	ENST00000355640		248	agG/agT																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115863	8115891	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCCACATCTCGCCCTTCAGCCACTCCA	GAGCCACATCTCGCCCTTCAGCCACTCCA	-			P-0060080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			188	153	856	0	ENST00000346208.3:c.1210_1238del	p.Ser404ProfsTer93	p.S404Pfs*93	ENST00000346208		403	ctGAGCCACATCTCGCCCTTCAGCCACTCCAgc/ctgc																																																																															
ATM	472	MSKCC	GRCh37	11	108206606	108206606	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			108	21	567	0	ENST00000278616.4:c.8186A>G	p.Gln2729Arg	p.Q2729R	ENST00000278616	NM_000051.3	2729	cAa/cGa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112557	115112576	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTGGCCGCGTCGCAGGCC	TCTTGGCCGCGTCGCAGGCC	-			P-0060080-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			255	137	845	0	ENST00000257566.3:c.1164_1183del	p.Glu388AspfsTer12	p.E388Dfs*12	ENST00000257566	NM_016569.3	388	gaGGCCTGCGACGCGGCCAAGAtc/gatc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0060156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	306	453	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692794	89692794	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121909238		P-0060156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	69	251	0	ENST00000371953.3:c.278A>G	p.His93Arg	p.H93R	ENST00000371953	NM_000314.4	93	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0060156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	289	651	0	ENST00000269305.4:c.560-1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
TP53	7157	MSKCC	GRCh37	17	7573991	7573992	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0060156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	97	434	0	ENST00000269305.4:c.1035dup	p.Glu346Ter	p.E346*	ENST00000269305	NM_001126112.2	345	-/T																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061111	38061138	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTCAGGGCCGCCCTTGGCGCCGCTGC	CTCTCAGGGCCGCCCTTGGCGCCGCTGC	-			P-0060156-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	120	568	0	ENST00000250448.2:c.851_878del	p.Gly284AlafsTer28	p.G284Afs*28	ENST00000250448	NM_004496.3	284	gGCAGCGGCGCCAAGGGCGGCCCTGAGAGc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0060161-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	86	522	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513282	44513287	+	inframe_deletion	In_Frame_Del	DEL	CCACCG	CCACCG	-	rs769920981		P-0060161-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	42	581	3	ENST00000291552.4:c.648_653del	p.Gly222_Gly223del	p.G222_G223del	ENST00000291552	NM_006758.2	216	ggCGGTGGt/ggt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602822	10602822	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	151	730	0	ENST00000171111.5:c.756G>T	p.Trp252Cys	p.W252C	ENST00000171111	NM_203500.1	252	tgG/tgT																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78681707	78681707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	8	485	0	ENST00000306801.3:c.415C>T	p.Arg139Cys	p.R139C	ENST00000306801	NM_020761.2	139	Cgc/Tgc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843676	156843676	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	169	878	0	ENST00000524377.1:c.1102G>T	p.Gly368Cys	p.G368C	ENST00000524377	NM_002529.3	368	Ggc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108180925	108180925	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0060191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			30	43	316	0	ENST00000278616.4:c.5801T>G	p.Leu1934Arg	p.L1934R	ENST00000278616	NM_000051.3	1934	cTg/cGg																																																																															
MAX	4149	MSKCC	GRCh37	14	65560533	65560533	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0060191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	73	442	0	ENST00000358664.4:c.64G>T	p.Ala22Ser	p.A22S	ENST00000358664	NM_002382.4	22	Gct/Tct																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532582	63532582	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0060191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	151	724	0	ENST00000307078.5:c.1997A>G	p.Asn666Ser	p.N666S	ENST00000307078	NM_004655.3	666	aAc/aGc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178574	32178574	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	86	609	0	ENST00000375023.3:c.2820G>T	p.Gln940His	p.Q940H	ENST00000375023	NM_004557.3	940	caG/caT																																																																															
BRAF	673	MSKCC	GRCh37	7	140481392	140481393	+	inframe_insertion	In_Frame_Ins	INS	-	-	TAGACTGTTCCAAATGATCCA			P-0060191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			78	11	335	0	ENST00000288602.6:c.1395_1415dup	p.Gly466_Tyr472dup	p.G466_Y472dup	ENST00000288602	NM_004333.4	466	tac/taTGGATCATTTGGAACAGTCTAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971203	21971204	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0060195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	252	625	0	ENST00000304494.5:c.154dup	p.Met52AsnfsTer68	p.M52Nfs*68	ENST00000304494	NM_000077.4	52	atg/aAtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0060195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	65	308	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778192	3778192	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0060195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1007	380	751	1	ENST00000262367.5:c.6856A>T	p.Asn2286Tyr	p.N2286Y	ENST00000262367	NM_004380.2	2286	Aac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578447	7578460	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCATGGCGCGGA	GGCCATGGCGCGGA	-			P-0060195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	306	663	0	ENST00000269305.4:c.470_483del	p.Val157AspfsTer19	p.V157Dfs*19	ENST00000269305	NM_001126112.2	157	gTCCGCGCCATGGCC/g																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440910	56440914	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTG	CAGTG	-			P-0060195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	332	621	0	ENST00000407977.2:c.423_427del	p.Thr142GlyfsTer6	p.T142Gfs*6	ENST00000407977		141	atCACTGag/atag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534320	63534320	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0060195-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	385	807	0	ENST00000307078.5:c.1200+1G>T		p.X400_splice	ENST00000307078	NM_004655.3	400																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0060196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			150	21	473	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0060196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	13	572	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021817	71021817	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs797045586		P-0060196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	23	441	0	ENST00000318789.4:c.1541G>A	p.Arg514His	p.R514H	ENST00000318789	NM_032682.5	514	cGt/cAt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs794727798		P-0060196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	20	583	0	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112174236	112174236	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0060196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	27	489	0	ENST00000257430.4:c.2945C>A	p.Ser982Ter	p.S982*	ENST00000257430	NM_000038.5	982	tCg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0060196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	15	313	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11168975	11168975	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1329240441		P-0060196-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	11	439	0	ENST00000344626.4:c.4469C>T	p.Ser1490Leu	p.S1490L	ENST00000344626	NM_003072.3	1490	tCg/tTg																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230561605	230561605	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0060197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	147	759	0				ENST00000391860	NM_001258311.1																																																																																	
PTEN	5728	MSKCC	GRCh37	10	89692851	89692852	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0060197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			61	58	162	0	ENST00000371953.3:c.336_337dup	p.Ser113LysfsTer22	p.S113Kfs*22	ENST00000371953	NM_000314.4	112	cta/ctAAa																																																																															
RB1	5925	MSKCC	GRCh37	13	48881455	48881456	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0060197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	178	316	0	ENST00000267163.4:c.179dup	p.Leu60PhefsTer50	p.L60Ffs*50	ENST00000267163	NM_000321.2	59	-/T																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0060197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	469	838	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30320939	30320939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	221	396	0	ENST00000322652.5:c.1349G>A	p.Cys450Tyr	p.C450Y	ENST00000322652	NM_015355.2	450	tGc/tAc																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14629157	14629157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	134	632	0	ENST00000254322.2:c.5G>A	p.Gly2Asp	p.G2D	ENST00000254322	NM_006145.1	2	gGt/gAt																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24167595	24167595	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	147	597	0	ENST00000263121.7:c.979G>T	p.Ala327Ser	p.A327S	ENST00000263121	NM_003073.3	327	Gcc/Tcc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247373	153247373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	284	543	0	ENST00000281708.4:c.1429G>A	p.Gly477Ser	p.G477S	ENST00000281708	NM_033632.3	477	Ggt/Agt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911112	29911112	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0060197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	375	799	0	ENST00000376809.5:c.411C>G	p.Tyr137Ter	p.Y137*	ENST00000376809	NM_002116.7	137	taC/taG																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31238100	31238100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	221	497	0	ENST00000376228.5:c.782G>A	p.Gly261Glu	p.G261E	ENST00000376228	NM_002117.5	261	gGa/gAa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341720	8341720	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0060197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	241	544	0	ENST00000356435.5:c.4920T>G	p.Asn1640Lys	p.N1640K	ENST00000356435		1640	aaT/aaG																																																																															
CUL3	8452	MSKCC	GRCh37	2	225360597	225360598	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	G			P-0060197-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	186	353	0	ENST00000264414.4:c.1793_1794delinsC	p.Gln598ProfsTer2	p.Q598Pfs*2	ENST00000264414	NM_003590.4	598	cAG/cC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0060205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			51	236	458	0	ENST00000269305.4:c.673-2A>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
AGO2	27161	MSKCC	GRCh37	8	141568583	141568583	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0060205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			737	205	569	0	ENST00000220592.5:c.878+1G>A		p.X293_splice	ENST00000220592	NM_012154.3	293																																																																																
JAK3	3718	MSKCC	GRCh37	19	17937619	17937619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			572	175	567	0	ENST00000458235.1:c.3308G>T	p.Arg1103Leu	p.R1103L	ENST00000458235	NM_000215.3	1103	cGg/cTg																																																																															
CBFB	865	MSKCC	GRCh37	16	67116185	67116185	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			708	185	439	0	ENST00000412916.2:c.469G>C	p.Asp157His	p.D157H	ENST00000412916		157	Gac/Cac																																																																															
DDR2	4921	MSKCC	GRCh37	1	162725037	162725037	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	37	651	0	ENST00000367921.3:c.509C>A	p.Thr170Asn	p.T170N	ENST00000367921	NM_006182.2	170	aCc/aAc																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226252136	226252136	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	47	161	0	ENST00000366813.1:c.84G>C	p.Lys28Asn	p.K28N	ENST00000366813		28	aaG/aaC																																																																															
SPRTN	83932	MSKCC	GRCh37	1	231488944	231488944	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	225	456	0	ENST00000295050.7:c.1307A>G	p.Tyr436Cys	p.Y436C	ENST00000295050	NM_032018.5	436	tAt/tGt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	432944	432944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			711	50	351	1	ENST00000399788.2:c.1972G>A	p.Val658Ile	p.V658I	ENST00000399788	NM_001042603.1	658	Gtc/Atc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991955	72991955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	111	615	0	ENST00000268489.5:c.2090C>T	p.Pro697Leu	p.P697L	ENST00000268489	NM_006885.3	697	cCg/cTg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86674351	86674366	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGAGGTAAGAATTTA	GTGAGGTAAGAATTTA	-			P-0060205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			49	107	251	0	ENST00000274376.6:c.2483_2487+11del		p.X828_splice	ENST00000274376	NM_002890.2	828																																																																																
LATS1	9113	MSKCC	GRCh37	6	150004907	150004907	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	353	610	0	ENST00000253339.5:c.1318C>G	p.Pro440Ala	p.P440A	ENST00000253339		440	Cca/Gca																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864854	117864854	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060205-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	318	420	0	ENST00000297338.2:c.1255G>C	p.Glu419Gln	p.E419Q	ENST00000297338	NM_006265.2	419	Gaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0060207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			167	174	590	1	ENST00000269305.4:c.403del	p.Cys135AlafsTer35	p.C135Afs*35	ENST00000269305	NM_001126112.2	135	Tgc/gc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692948	89692951	+	frameshift_variant	Frame_Shift_Del	DEL	ATTT	ATTT	-			P-0060207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	100	326	0	ENST00000371953.3:c.432_435del	p.Lys144AsnfsTer2	p.K144Nfs*2	ENST00000371953	NM_000314.4	144	aaATTT/aa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198274665	198274665	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060207-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	198	462	0	ENST00000335508.6:c.733C>G	p.Pro245Ala	p.P245A	ENST00000335508	NM_012433.2	245	Cct/Gct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587780070		P-0060209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	302	735	0	ENST00000269305.4:c.535C>A	p.His179Asn	p.H179N	ENST00000269305	NM_001126112.2	179	Cat/Aat																																																																															
PTEN	5728	MSKCC	GRCh37	10	89725098	89725098	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0060209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			89	40	93	0	ENST00000371953.3:c.1081A>T	p.Ser361Cys	p.S361C	ENST00000371953	NM_000314.4	361	Agt/Tgt																																																																															
NBN	4683	MSKCC	GRCh37	8	90967661	90967661	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	141	354	0	ENST00000265433.3:c.1247T>C	p.Met416Thr	p.M416T	ENST00000265433	NM_002485.4	416	aTg/aCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845844	72845844	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760400785		P-0060211-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	106	671	0	ENST00000268489.5:c.3623C>T	p.Ser1208Leu	p.S1208L	ENST00000268489	NM_006885.3	1208	tCg/tTg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266711	198266711	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0060211-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	51	390	0	ENST00000335508.6:c.2221A>G	p.Lys741Glu	p.K741E	ENST00000335508	NM_012433.2	741	Aag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577128	7577128	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0060211-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	115	610	0	ENST00000269305.4:c.810T>A	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	ttT/ttA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0060211-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	130	334	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015012	37015012	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060211-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			362	134	599	0	ENST00000358127.4:c.392G>T	p.Ser131Ile	p.S131I	ENST00000358127	NM_001280556.1	131	aGc/aTc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	144	671	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873640	35873640	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	105	526	0	ENST00000303115.3:c.596C>A	p.Ala199Glu	p.A199E	ENST00000303115	NM_002185.3	199	gCa/gAa																																																																															
CBFB	865	MSKCC	GRCh37	16	67070549	67070549	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0060243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	121	489	0	ENST00000412916.2:c.173del	p.Val58GlyfsTer31	p.V58Gfs*31	ENST00000412916		58	gTg/gg																																																																															
CDH1	999	MSKCC	GRCh37	16	68847266	68847267	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0060243-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	142	547	0	ENST00000261769.5:c.1191dup	p.Val398SerfsTer3	p.V398Sfs*3	ENST00000261769	NM_004360.3	396	-/A																																																																															
RET	5979	MSKCC	GRCh37	10	43622131	43622131	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0060244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	142	533	0	ENST00000355710.3:c.3148C>T	p.Arg1050Ter	p.R1050*	ENST00000355710	NM_020975.4	1050	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0060244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	234	269	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106469	27106469	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	203	678	0	ENST00000324856.7:c.6080del	p.Ala2027AspfsTer3	p.A2027Dfs*3	ENST00000324856	NM_006015.4	2027	gCa/ga																																																																															
SESN2	83667	MSKCC	GRCh37	1	28595715	28595715	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060244-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	180	591	0	ENST00000253063.3:c.112C>G	p.Arg38Gly	p.R38G	ENST00000253063	NM_031459.4	38	Cgg/Ggg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0060246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	328	762	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0060246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	203	536	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	164	400	0	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175508	112175509	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0060246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	104	521	0	ENST00000257430.4:c.4219_4220del	p.Ser1407Ter	p.S1407*	ENST00000257430	NM_000038.5	1406	cAG/c																																																																															
BCOR	54880	MSKCC	GRCh37	X	39930399	39930399	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1433397184		P-0060246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	215	565	0	ENST00000378444.4:c.3065G>A	p.Arg1022His	p.R1022H	ENST00000378444	NM_001123385.1	1022	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0060246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	136	359	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120004	70120005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0060246-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	250	689	0	ENST00000245479.2:c.1008_1009dup	p.Ser337CysfsTer47	p.S337Cfs*47	ENST00000245479	NM_000346.3	336	atg/aTGtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0060247-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	32	303	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0060247-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	410	666	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0060247-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			712	37	825	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982440	25982440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0060247-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	317	582	0	ENST00000435504.4:c.850C>T	p.Arg284Ter	p.R284*	ENST00000435504		284	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0060247-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	201	411	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67626399	67626399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060247-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	21	471	0	ENST00000272342.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000272342	NM_019002.3	108	Gat/Aat																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0060253-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	68	491	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0060253-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	33	262	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0060253-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	121	648	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0060253-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			618	79	658	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0060253-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	106	630	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931673	39931673	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121434619		P-0060253-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	126	504	0	ENST00000378444.4:c.2926C>T	p.Arg976Ter	p.R976*	ENST00000378444	NM_001123385.1	976	Cga/Tga																																																																															
ATR	545	MSKCC	GRCh37	3	142186813	142186813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060253-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	30	360	0	ENST00000350721.4:c.6650G>A	p.Arg2217His	p.R2217H	ENST00000350721	NM_001184.3	2217	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0060253-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	82	385	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554289	63554289	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0060253-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			551	139	600	0	ENST00000307078.5:c.450del	p.Lys150AsnfsTer8	p.K150Nfs*8	ENST00000307078	NM_004655.3	150	aaG/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0060256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			978	33	907	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0060256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	27	387	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141492	11141492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060256-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			791	35	764	0	ENST00000344626.4:c.3469C>T	p.Arg1157Trp	p.R1157W	ENST00000344626	NM_003072.3	1157	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0060260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	220	258	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0060260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	217	475	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0060260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			622	325	614	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179455	56179457	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0060260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	175	441	0	ENST00000399503.3:c.3770_3772del	p.Cys1257del	p.C1257del	ENST00000399503	NM_005921.1	1256	tcTTGt/tct																																																																															
BARD1	580	MSKCC	GRCh37	2	215645413	215645414	+	missense_variant	Missense_Mutation	DNP	TG	TG	CC			P-0060260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	216	548	0	ENST00000260947.4:c.1184_1185delinsGG	p.Pro395Arg	p.P395R	ENST00000260947	NM_000465.2	395	cCA/cGG																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180580	56180581	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0060260-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	126	445	0	ENST00000399503.3:c.3911dup	p.Asn1305LysfsTer4	p.N1305Kfs*4	ENST00000399503	NM_005921.1	1303	-/C																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0057385-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			753	231	429	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0057385-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			755	76	527	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891584	151891584	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0057385-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			749	93	418	0	ENST00000262189.6:c.4448T>G	p.Leu1483Ter	p.L1483*	ENST00000262189	NM_170606.2	1483	tTa/tGa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581229	48581229	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			125	301	498	0	ENST00000342988.3:c.533C>A	p.Ser178Ter	p.S178*	ENST00000342988	NM_005359.5	178	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0059856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			174	295	612	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0059856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			185	154	293	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
ARAF	369	MSKCC	GRCh37	X	47426133	47426133	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059856-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			176	384	641	0	ENST00000377045.4:c.653T>C	p.Val218Ala	p.V218A	ENST00000377045	NM_001654.4	218	gTc/gCc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522552	176522552	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059859-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			611	104	764	0	ENST00000292408.4:c.1649T>A	p.Val550Glu	p.V550E	ENST00000292408	NM_213647.1	550	gTg/gAg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056119	26056119	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059859-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			841	74	583	0	ENST00000343677.2:c.538G>C	p.Ala180Pro	p.A180P	ENST00000343677	NM_005319.3	180	Gcg/Ccg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0060132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	65	562	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121912651		P-0060132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	70	603	0	ENST00000269305.4:c.742C>G	p.Arg248Gly	p.R248G	ENST00000269305	NM_001126112.2	248	Cgg/Ggg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627996	187627996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060132-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	80	647	0	ENST00000441802.2:c.2986G>A	p.Val996Met	p.V996M	ENST00000441802	NM_005245.3	996	Gtg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0060136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1972	536	717	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0060136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			863	1346	537	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121912651		P-0060136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	435	580	0	ENST00000269305.4:c.742C>G	p.Arg248Gly	p.R248G	ENST00000269305	NM_001126112.2	248	Cgg/Ggg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13940457	13940457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	65	387	0	ENST00000405192.2:c.1049G>A	p.Arg350Gln	p.R350Q	ENST00000405192	NM_001163147.1	350	cGa/cAa																																																																															
IDH1	3417	MSKCC	GRCh37	2	209110124	209110125	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAC			P-0060136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	64	444	0	ENST00000345146.2:c.436_438dup	p.Val146dup	p.V146dup	ENST00000345146	NM_005896.2	146	-/GTT																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0060138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			830	86	471	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0060138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	229	350	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987077	36987077	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0060138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	82	617	0	ENST00000354822.5:c.612C>G	p.Tyr204Ter	p.Y204*	ENST00000354822	NM_001079668.2	204	taC/taG																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987097	36987097	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0060138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			676	86	603	0	ENST00000354822.5:c.592T>G	p.Phe198Val	p.F198V	ENST00000354822	NM_001079668.2	198	Ttc/Gtc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249017	55249018	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0060139-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	113	593	0	ENST00000275493.2:c.2317_2319dup	p.His773dup	p.H773dup	ENST00000275493	NM_005228.3	773	ccc/ccCCAc																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2636722	2636722	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0060139-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			905	60	664	0	ENST00000342085.4:c.1171T>A	p.Ser391Thr	p.S391T	ENST00000342085	NM_002613.4	391	Tcc/Acc																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544257	86544257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060139-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	92	775	0	ENST00000262426.4:c.82C>A	p.Pro28Thr	p.P28T	ENST00000262426	NM_001451.2	28	Ccc/Acc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274272	5274272	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060139-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	118	668	0	ENST00000357368.4:c.175G>T	p.Asp59Tyr	p.D59Y	ENST00000357368	NM_002850.3	59	Gac/Tac																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143033702	143033702	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060139-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			212	57	441	0	ENST00000262992.4:c.2269G>C	p.Ala757Pro	p.A757P	ENST00000262992	NM_001101669.1	757	Gct/Cct																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041693	47041693	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0060139-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	111	651	0	ENST00000329236.7:c.1685del	p.Lys562ArgfsTer64	p.K562Rfs*64	ENST00000329236	NM_001204466.1	562	Aag/ag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0060144-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	116	638	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843510	3843510	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060144-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			890	107	691	0	ENST00000262367.5:c.1093C>G	p.His365Asp	p.H365D	ENST00000262367	NM_004380.2	365	Cat/Gat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044876	47044877	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0060144-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			741	86	956	0	ENST00000329236.7:c.1972_1973dup	p.Ser658ArgfsTer67	p.S658Rfs*67	ENST00000329236	NM_001204466.1	656	-/GA																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469924	25469926	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0060148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			781	99	621	0	ENST00000264709.3:c.1116_1118del	p.Leu373del	p.L373del	ENST00000264709	NM_175629.2	372	gtCCTg/gtg																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61323100	61323100	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200813295		P-0060148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			832	48	869	0	ENST00000283752.5:c.964G>A	p.Gly322Ser	p.G322S	ENST00000283752	NM_006919.2	322	Ggt/Agt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15379742	15379742	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0060148-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	49	536	0	ENST00000263377.2:c.397T>A	p.Phe133Ile	p.F133I	ENST00000263377	NM_058243.2	133	Ttt/Att																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0060166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			73	981	674	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942752	44942752	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1457797612		P-0060166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			35	214	397	0	ENST00000377967.4:c.3332G>C	p.Arg1111Pro	p.R1111P	ENST00000377967	NM_021140.2	1111	cGt/cCt																																																																															
AKT1	207	MSKCC	GRCh37	14	105241433	105241433	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0060166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	22	645	0	ENST00000349310.3:c.547A>T	p.Lys183Ter	p.K183*	ENST00000349310	NM_001014432.1	183	Aag/Tag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117725442	117725442	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0060166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	264	319	0	ENST00000368508.3:c.438+1G>T		p.X146_splice	ENST00000368508	NM_002944.2	146																																																																																
PDCD1LG2	80380	MSKCC	GRCh37	9	5522562	5522562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060166-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	26	325	0	ENST00000397747.3:c.16C>G	p.Leu6Val	p.L6V	ENST00000397747	NM_025239.3	6	Cta/Gta																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034444	47034444	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0060167-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	74	491	0	ENST00000329236.7:c.298G>T	p.Glu100Ter	p.E100*	ENST00000329236	NM_001204466.1	100	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602452	10602452	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0060167-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	155	761	0	ENST00000171111.5:c.1126G>C	p.Ala376Pro	p.A376P	ENST00000171111	NM_203500.1	376	Gcc/Ccc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913240		P-0060167-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	62	472	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434516	49434516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060167-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			693	85	783	0	ENST00000301067.7:c.7037G>A	p.Gly2346Asp	p.G2346D	ENST00000301067	NM_003482.3	2346	gGc/gAc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143003188	143003189	+	missense_variant	Missense_Mutation	DNP	TC	TC	CT			P-0060167-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	24	351	0	ENST00000262992.4:c.2637_2638delinsAG	p.Met879_Arg880delinsIleGly	p.M879_R880delinsIG	ENST00000262992	NM_001101669.1	879	atGAga/atAGga																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38315038	38315039	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0060167-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	39	525	0	ENST00000425967.3:c.25dup	p.Arg9LysfsTer21	p.R9Kfs*21	ENST00000425967	NM_001174067.1	9	agg/aAgg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412051	63412051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0060167-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			567	97	708	0	ENST00000330258.3:c.1116G>T	p.Met372Ile	p.M372I	ENST00000330258	NM_152424.3	372	atG/atT																																																																															
STK11	6794	MSKCC	GRCh37	19	1218481	1218483	+	frameshift_variant	Frame_Shift_Del	DEL	ACG	ACG	TT			P-0060167-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	89	499	0	ENST00000326873.7:c.356_358delinsTT	p.Asn119IlefsTer10	p.N119Ifs*10	ENST00000326873	NM_000455.4	119	aACGaa/aTTaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0060169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	160	704	7	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
CASP8	841	MSKCC	GRCh37	2	202149974	202149974	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1301592633		P-0060169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	254	696	8	ENST00000358485.4:c.1415G>A	p.Arg472Gln	p.R472Q	ENST00000358485	NM_001080125.1	472	cGa/cAa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390649	139390650	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs763016003		P-0060169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	184	828	2	ENST00000277541.6:c.7541_7542del	p.Pro2514ArgfsTer4	p.P2514Rfs*4	ENST00000277541	NM_017617.3	2514	cCT/c																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851883	134851883	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0060169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	63	647	0	ENST00000398015.3:c.1289A>G	p.Asn430Ser	p.N430S	ENST00000398015	NM_004441.4	430	aAc/aGc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146517	185146517	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060169-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	47	683	3	ENST00000265026.3:c.148G>C	p.Gly50Arg	p.G50R	ENST00000265026	NM_004721.4	50	Ggg/Cgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249037	55249038	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0059806-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			643	586	560	0	ENST00000275493.2:c.2335_2336delinsTT	p.Gly779Phe	p.G779F	ENST00000275493	NM_005228.3	779	GGc/TTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0059806-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			468	217	504	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0059806-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			749	130	718	0	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	10274231	10274231	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367543131		P-0059806-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			656	54	513	0	ENST00000330684.3:c.38C>T	p.Pro13Leu	p.P13L	ENST00000330684	NM_001134407.1	13	cCg/cTg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342676	87342676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059806-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			440	114	553	0	ENST00000277120.3:c.961G>A	p.Gly321Arg	p.G321R	ENST00000277120		321	Ggg/Agg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486248	8486248	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs768330226		P-0059806-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			336	118	474	0	ENST00000356435.5:c.2569C>A	p.Arg857Ser	p.R857S	ENST00000356435		857	Cgt/Agt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295650	1295650	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0059806-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			680	124	690	0				ENST00000310581	NM_198253.2																																																																																	
NTRK1	4914	MSKCC	GRCh37	1	156846327	156846327	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059806-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			759	113	582	0	ENST00000524377.1:c.1768G>C	p.Glu590Gln	p.E590Q	ENST00000524377	NM_002529.3	590	Gag/Cag																																																																															
RET	5979	MSKCC	GRCh37	10	43604668	43604668	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059806-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			517	156	551	0	ENST00000355710.3:c.1253G>T	p.Arg418Leu	p.R418L	ENST00000355710	NM_020975.4	418	cGa/cTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29661904	29661904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059806-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			570	201	469	0	ENST00000358273.4:c.5861C>T	p.Ser1954Leu	p.S1954L	ENST00000358273	NM_001042492.2	1954	tCa/tTa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39584318	39584318	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0059806-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			443	86	324	0	ENST00000262039.4:c.985-2A>C		p.X329_splice	ENST00000262039	NM_002647.2	329																																																																																
ALK	238	MSKCC	GRCh37	2	29543677	29543677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059806-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			831	121	632	0	ENST00000389048.3:c.1486C>T	p.Pro496Ser	p.P496S	ENST00000389048	NM_004304.4	496	Ccc/Tcc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46251053	46251053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059806-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			510	74	329	0	ENST00000371998.3:c.62C>T	p.Pro21Leu	p.P21L	ENST00000371998		21	cCa/cTa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413637	138413637	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059806-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			439	142	403	0	ENST00000289153.2:c.1883G>T	p.Arg628Leu	p.R628L	ENST00000289153	NM_006219.2	628	cGa/cTa																																																																															
TERT	7015	MSKCC	GRCh37	5	1253889	1253889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059806-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			571	130	588	0	ENST00000310581.5:c.3353C>T	p.Ala1118Val	p.A1118V	ENST00000310581	NM_198253.2	1118	gCa/gTa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149495429	149495429	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059806-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			743	145	701	0	ENST00000261799.4:c.3218A>T	p.Glu1073Val	p.E1073V	ENST00000261799	NM_002609.3	1073	gAg/gTg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44928931	44928931	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059806-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			384	79	376	0	ENST00000377967.4:c.2031G>C	p.Gln677His	p.Q677H	ENST00000377967	NM_021140.2	677	caG/caC																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14317322	14317322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0060035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			145	75	291	0	ENST00000256196.4:c.188G>A	p.Arg63Gln	p.R63Q	ENST00000256196		63	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0060035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			66	72	258	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0060035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			107	137	677	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G	rs730881677		P-0060035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	109	590	0	ENST00000304494.5:c.151-1G>C		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T	rs730881673		P-0060035-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	109	656	0	ENST00000304494.5:c.131dup	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0060037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	54	833	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045872	47045872	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0060037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	91	498	0	ENST00000329236.7:c.2434-1G>T		p.X812_splice	ENST00000329236	NM_001204466.1	812																																																																																
ESR1	2099	MSKCC	GRCh37	6	152265353	152265353	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188957694		P-0060037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	55	658	0	ENST00000206249.3:c.806G>A	p.Arg269His	p.R269H	ENST00000206249	NM_000125.3	269	cGc/cAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69058536	69058536	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61753703		P-0060037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	36	466	0	ENST00000288368.4:c.4180C>T	p.Arg1394Trp	p.R1394W	ENST00000288368	NM_024870.2	1394	Cgg/Tgg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576121	88576121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374272958		P-0060037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	51	735	0	ENST00000360948.2:c.1552C>T	p.Arg518Cys	p.R518C	ENST00000360948	NM_001012338.2	518	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913240		P-0060037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	31	500	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603018	48603018	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0060037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	43	432	0	ENST00000342988.3:c.1319T>A	p.Leu440Ter	p.L440*	ENST00000342988	NM_005359.5	440	tTg/tAg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871019	12871020	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0060042-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			802	57	617	0	ENST00000228872.4:c.247dup	p.Ser83LysfsTer42	p.S83Kfs*42	ENST00000228872	NM_004064.3	82	-/A																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0060114-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	143	425	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0060115-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	83	467	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987149	36987149	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0060115-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	70	680	0	ENST00000354822.5:c.540C>G	p.Ser180Arg	p.S180R	ENST00000354822	NM_001079668.2	180	agC/agG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0060125-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	36	389	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0057387-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			505	361	606	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0057387-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			429	256	270	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017705	31017743	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GTTCTCGGGCTGCCACGCCGATGGCGAGAGCGGCAGCCC	GTTCTCGGGCTGCCACGCCGATGGCGAGAGCGGCAGCCC	-			P-0057387-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			650	115	385	0	ENST00000375687.4:c.569_607del	p.Phe190_Pro202del	p.F190_P202del	ENST00000375687	NM_015338.5	189	ggGTTCTCGGGCTGCCACGCCGATGGCGAGAGCGGCAGCCCg/ggg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047989	180047989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057387-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			771	434	662	0	ENST00000261937.6:c.2186C>T	p.Ser729Phe	p.S729F	ENST00000261937	NM_182925.4	729	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0060028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			69	206	247	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56857628	56857628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0060028-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	105	198	0	ENST00000308159.5:c.664G>A	p.Asp222Asn	p.D222N	ENST00000308159	NM_014669.4	222	Gac/Aac																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165971	118165971	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			400	92	675	0	ENST00000369448.3:c.481A>T	p.Asn161Tyr	p.N161Y	ENST00000369448	NM_017709.3	161	Aac/Tac																																																																															
TET1	80312	MSKCC	GRCh37	10	70405821	70405821	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			174	19	498	0	ENST00000373644.4:c.3335T>A	p.Val1112Glu	p.V1112E	ENST00000373644	NM_030625.2	1112	gTa/gAa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12037378	12037378	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0059469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	52	733	0	ENST00000396373.4:c.1010-1G>C		p.X337_splice	ENST00000396373	NM_001987.4	337																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49433935	49433935	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			386	46	850	0	ENST00000301067.7:c.7618C>G	p.Gln2540Glu	p.Q2540E	ENST00000301067	NM_003482.3	2540	Cag/Gag																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121435410	121435410	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	42	805	1	ENST00000257555.6:c.1443G>C	p.Gln481His	p.Q481H	ENST00000257555		481	caG/caC																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582103	95582103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			215	82	579	0	ENST00000343455.3:c.1808C>G	p.Pro603Arg	p.P603R	ENST00000343455	NM_177438.2	603	cCt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577535	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0059469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			300	90	562	0	ENST00000269305.4:c.746_747delinsTT	p.Arg249Ile	p.R249I	ENST00000269305	NM_001126112.2	249	aGG/aTT																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920444	134920444	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			330	42	613	0	ENST00000398015.3:c.2259C>A	p.Asn753Lys	p.N753K	ENST00000398015	NM_004441.4	753	aaC/aaA																																																																															
MET	4233	MSKCC	GRCh37	7	116340214	116340214	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			400	38	595	0	ENST00000397752.3:c.1076G>C	p.Arg359Pro	p.R359P	ENST00000397752	NM_000245.2	359	cGa/cCa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0059469-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	78	677	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0059643-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			299	38	183	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68849569	68849570	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0059643-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			580	95	459	0	ENST00000261769.5:c.1476_1477del	p.Arg492SerfsTer44	p.R492Sfs*44	ENST00000261769	NM_004360.3	491	aAG/a																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374979	118374979	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059643-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			688	74	496	0	ENST00000534358.1:c.8372G>C	p.Arg2791Thr	p.R2791T	ENST00000534358	NM_005933.3	2791	aGa/aCa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104000	69104000	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059643-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			776	93	328	0	ENST00000288368.4:c.4390T>C	p.Ser1464Pro	p.S1464P	ENST00000288368	NM_024870.2	1464	Tcc/Ccc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029453	16029454	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0059960-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	90	382	0	ENST00000268712.3:c.1576_1577del	p.Glu526LysfsTer9	p.E526Kfs*9	ENST00000268712	NM_006311.3	526	GAa/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0059961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	12	599	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059961-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	30	367	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0059962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	51	634	0	ENST00000257430.4:c.4192_4193del	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710652	114710652	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	70	597	0	ENST00000543371.1:c.137C>A	p.Ser46Ter	p.S46*	ENST00000543371	NM_001198531.1	46	tCg/tAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710669	114710669	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	70	588	1	ENST00000543371.1:c.154T>A	p.Ser52Thr	p.S52T	ENST00000543371	NM_001198531.1	52	Tca/Aca																																																																															
ERF	2077	MSKCC	GRCh37	19	42754483	42754483	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0059962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	69	694	0	ENST00000222329.4:c.257G>A	p.Arg86His	p.R86H	ENST00000222329	NM_006494.2	86	cGc/cAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165403	47165404	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0059962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	60	570	0	ENST00000409792.3:c.722_723insT	p.Pro242ThrfsTer14	p.P242Tfs*14	ENST00000409792	NM_014159.6	241	cca/ccTa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497304	149497304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	67	573	0	ENST00000261799.4:c.3014G>A	p.Ser1005Asn	p.S1005N	ENST00000261799	NM_002609.3	1005	aGc/aAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157511338	157511338	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0059962-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	59	546	0	ENST00000346085.5:c.3856A>T	p.Arg1286Ter	p.R1286*	ENST00000346085	NM_020732.3	1286	Aga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0059963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			59	454	671	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5256125	5256125	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0059963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	137	414	0	ENST00000357368.4:c.712C>T	p.Arg238Ter	p.R238*	ENST00000357368	NM_002850.3	238	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604655	48604655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			75	343	567	0	ENST00000342988.3:c.1477G>T	p.Asp493Tyr	p.D493Y	ENST00000342988	NM_005359.5	493	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0059963-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			47	223	346	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0059966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	88	584	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546832	9546832	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1018346655		P-0059966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	125	662	0	ENST00000353224.5:c.1190C>T	p.Thr397Met	p.T397M	ENST00000353224	NM_177990.2	397	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	41	354	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628266	90628266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	53	731	0	ENST00000330062.3:c.1145G>A	p.Arg382Gln	p.R382Q	ENST00000330062	NM_002168.2	382	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175612	112175617	+	frameshift_variant	Frame_Shift_Del	DEL	CCACCT	CCACCT	ACACA			P-0059966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	84	660	0	ENST00000257430.4:c.4321_4326delinsACACA	p.Pro1441ThrfsTer32	p.P1441Tfs*32	ENST00000257430	NM_000038.5	1441	CCACCT/ACACA																																																																															
APC	324	MSKCC	GRCh37	5	112175642	112175643	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAGTACCTAAAAATA			P-0059966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	42	635	0	ENST00000257430.4:c.4355_4369dup	p.Val1452_Lys1456dup	p.V1452_K1456dup	ENST00000257430	NM_000038.5	1452	gaa/gAAGTACCTAAAAATAaa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638278	176638278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059966-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			397	97	578	0	ENST00000439151.2:c.2878G>A	p.Gly960Ser	p.G960S	ENST00000439151	NM_022455.4	960	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0059968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	14	393	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059968-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	42	297	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0059983-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	1854	353	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059983-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			795	179	611	0	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059983-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			706	132	588	0	ENST00000269305.4:c.314G>C	p.Gly105Ala	p.G105A	ENST00000269305	NM_001126112.2	105	gGc/gCc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807340	3807340	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0059983-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			529	109	341	0	ENST00000262367.5:c.3647A>C	p.Lys1216Thr	p.K1216T	ENST00000262367	NM_004380.2	1216	aAg/aCg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324081	31324081	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059983-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	29	170	0	ENST00000412585.2:c.482A>G	p.Asp161Gly	p.D161G	ENST00000412585	NM_005514.6	161	gAc/gGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0059984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	2057	385	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0059984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			29	180	392	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987418	2987418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	93	312	0	ENST00000396946.4:c.11G>A	p.Gly4Glu	p.G4E	ENST00000396946	NM_032415.4	4	gGa/gAa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900363	3900363	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0059984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			204	67	445	0	ENST00000262367.5:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000262367	NM_004380.2	245	Cag/Tag																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271216	26271216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059984-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	161	505	1	ENST00000305910.3:c.397G>T	p.Gly133Trp	p.G133W	ENST00000305910	NM_003534.2	133	Ggg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0059988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	39	572	0	ENST00000257430.4:c.4473dup	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31449495	31449495	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs886369396		P-0059988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	48	366	0	ENST00000344624.3:c.2714A>G	p.Asn905Ser	p.N905S	ENST00000344624		905	aAt/aGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0059988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	22	289	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578223	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	37	547	0	ENST00000269305.4:c.626del	p.Arg209LysfsTer38	p.R209Kfs*38	ENST00000269305	NM_001126112.2	209	aGa/aa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71064699	71064699	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0059988-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	28	352	0	ENST00000318789.4:c.974+1G>A		p.X325_splice	ENST00000318789	NM_032682.5	325																																																																																
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	149	645	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066637	94066637	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	111	504	0	ENST00000369303.4:c.1122G>T	p.Trp374Cys	p.W374C	ENST00000369303	NM_004440.3	374	tgG/tgT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63409937	63409937	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	54	540	0	ENST00000330258.3:c.3230C>A	p.Pro1077His	p.P1077H	ENST00000330258	NM_152424.3	1077	cCt/cAt																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31237272	31237272	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs139702282		P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			315	34	375	0	ENST00000376228.5:c.1046C>T	p.Ala349Val	p.A349V	ENST00000376228	NM_002117.5	349	gCg/gTg																																																																															
AR	367	MSKCC	GRCh37	X	66937342	66937342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	37	470	0	ENST00000374690.3:c.2196C>A	p.Asp732Glu	p.D732E	ENST00000374690	NM_000044.3	732	gaC/gaA																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671929	30671929	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	141	622	0	ENST00000376406.3:c.5031G>T	p.Gln1677His	p.Q1677H	ENST00000376406	NM_014641.2	1677	caG/caT																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528564	89528564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	73	353	0	ENST00000336596.2:c.2864G>A	p.Gly955Asp	p.G955D	ENST00000336596	NM_005233.5	955	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	108	291	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197187	26197187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	57	803	0	ENST00000356476.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000356476		98	Gag/Aag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11303341	11303341	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	75	439	0	ENST00000361445.4:c.1242del	p.Asp415IlefsTer3	p.D415Ifs*3	ENST00000361445	NM_004958.3	414	caA/ca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023948	27023948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	31	478	0	ENST00000324856.7:c.1054G>A	p.Gly352Arg	p.G352R	ENST00000324856	NM_006015.4	352	Ggg/Agg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937941	36937941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	79	626	0	ENST00000361632.4:c.895C>T	p.Pro299Ser	p.P299S	ENST00000361632		299	Cca/Tca																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120506410	120506411	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	58	416	0	ENST00000256646.2:c.1701_1702del	p.Cys567Ter	p.C567*	ENST00000256646	NM_024408.3	567	tgTGag/tgag																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573777	64573777	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	98	552	0	ENST00000337652.1:c.991G>T	p.Gly331Cys	p.G331C	ENST00000337652	NM_130803.2	331	Ggc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42041842	42041842	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			176	96	513	0	ENST00000219905.7:c.6037G>T	p.Gly2013Ter	p.G2013*	ENST00000219905	NM_001164273.1	2013	Gga/Tga																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396892	396892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	118	557	0	ENST00000262320.3:c.134G>T	p.Cys45Phe	p.C45F	ENST00000262320	NM_003502.3	45	tGc/tTc																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110531	8110531	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	49	458	0	ENST00000585124.1:c.361C>T	p.Gln121Ter	p.Q121*	ENST00000585124	NM_004217.3	121	Cag/Tag																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110589	8110589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	58	427	0	ENST00000585124.1:c.303C>A	p.Phe101Leu	p.F101L	ENST00000585124	NM_004217.3	101	ttC/ttA																																																																															
CD79B	974	MSKCC	GRCh37	17	62007710	62007710	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	41	459	0	ENST00000392795.3:c.157T>A	p.Phe53Ile	p.F53I	ENST00000392795	NM_001039933.1	53	Ttc/Atc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141502	11141502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	90	553	1	ENST00000344626.4:c.3479G>T	p.Gly1160Val	p.G1160V	ENST00000344626	NM_003072.3	1160	gGg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211259	36211259	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	125	568	0	ENST00000222270.7:c.1010A>T	p.Gln337Leu	p.Q337L	ENST00000222270	NM_014727.1	337	cAg/cTg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198264847	198264847	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	68	421	1	ENST00000335508.6:c.2945T>C	p.Leu982Ser	p.L982S	ENST00000335508	NM_012433.2	982	tTg/tCg																																																																															
NF2	4771	MSKCC	GRCh37	22	30064376	30064376	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	99	395	0	ENST00000338641.4:c.940G>T	p.Asp314Tyr	p.D314Y	ENST00000338641	NM_000268.3	314	Gat/Tat																																																																															
ALB	213	MSKCC	GRCh37	4	74275145	74275145	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	95	419	0	ENST00000295897.4:c.556A>T	p.Lys186Ter	p.K186*	ENST00000295897	NM_000477.5	186	Aaa/Taa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143352342	143352342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	27	316	0	ENST00000262992.4:c.71C>A	p.Pro24His	p.P24H	ENST00000262992	NM_001101669.1	24	cCc/cAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180035975	180035975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	76	494	0	ENST00000261937.6:c.3886G>T	p.Gly1296Cys	p.G1296C	ENST00000261937	NM_182925.4	1296	Ggc/Tgc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467735	50467735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	105	507	1	ENST00000331340.3:c.970G>T	p.Ala324Ser	p.A324S	ENST00000331340	NM_006060.4	324	Gcc/Tcc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509656	106509656	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	47	512	0	ENST00000359195.3:c.1650G>T	p.Gln550His	p.Q550H	ENST00000359195	NM_002649.2	550	caG/caT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513336	106513336	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	69	379	0	ENST00000359195.3:c.2240T>A	p.Leu747His	p.L747H	ENST00000359195	NM_002649.2	747	cTt/cAt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523498	106523498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	43	333	0	ENST00000359195.3:c.2650G>A	p.Asp884Asn	p.D884N	ENST00000359195	NM_002649.2	884	Gac/Aac																																																																															
MED12	9968	MSKCC	GRCh37	X	70354950	70354950	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	41	515	0	ENST00000374080.3:c.4872G>C	p.Leu1624Phe	p.L1624F	ENST00000374080		1624	ttG/ttC																																																																															
STAG2	10735	MSKCC	GRCh37	X	123179147	123179147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059990-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			154	16	339	0	ENST00000218089.9:c.596C>T	p.Thr199Ile	p.T199I	ENST00000218089	NM_001042749.1	199	aCa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519999		P-0059992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	14	340	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098804	178098804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059992-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	21	443	0	ENST00000397062.3:c.241G>A	p.Gly81Ser	p.G81S	ENST00000397062	NM_006164.4	81	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0059994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	231	526	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0059994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	154	285	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368287	45368287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	162	353	0	ENST00000262160.6:c.1315G>A	p.Glu439Lys	p.E439K	ENST00000262160	NM_005901.5	439	Gaa/Aaa																																																																															
ALK	238	MSKCC	GRCh37	2	29446276	29446276	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0059994-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	180	554	0	ENST00000389048.3:c.3291C>A	p.Cys1097Ter	p.C1097*	ENST00000389048	NM_004304.4	1097	tgC/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577107	7577107	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0059998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	248	497	0	ENST00000269305.4:c.831T>A	p.Cys277Ter	p.C277*	ENST00000269305	NM_001126112.2	277	tgT/tgA																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212570063	212570063	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746784831		P-0059998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	56	390	1	ENST00000342788.4:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000342788	NM_005235.2	393	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112174058	112174058	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0059998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	78	473	0	ENST00000257430.4:c.2767A>T	p.Arg923Ter	p.R923*	ENST00000257430	NM_000038.5	923	Aga/Tga																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435201	18435202	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0059998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	100	495	0	ENST00000266497.5:c.192dup	p.Val65CysfsTer16	p.V65Cfs*16	ENST00000266497		62	-/T																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433689	49433689	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760968358		P-0059998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	69	626	0	ENST00000301067.7:c.7864G>A	p.Asp2622Asn	p.D2622N	ENST00000301067	NM_003482.3	2622	Gac/Aac																																																																															
APC	324	MSKCC	GRCh37	5	112175656	112175656	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0059998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	168	513	0	ENST00000257430.4:c.4365del	p.Asn1455LysfsTer18	p.N1455Kfs*18	ENST00000257430	NM_000038.5	1455	aaT/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0059998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	74	300	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603039	48603039	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0059998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	184	389	0	ENST00000342988.3:c.1340T>G	p.Met447Arg	p.M447R	ENST00000342988	NM_005359.5	447	aTg/aGg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143003197	143003197	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	53	305	0	ENST00000262992.4:c.2629G>C	p.Asp877His	p.D877H	ENST00000262992	NM_001101669.1	877	Gat/Cat																																																																															
STAG2	10735	MSKCC	GRCh37	X	123199732	123199732	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0059998-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	15	293	0	ENST00000218089.9:c.2032G>T	p.Glu678Ter	p.E678*	ENST00000218089	NM_001042749.1	678	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0059999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	255	569	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0059999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	1517	497	2	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920413	114920413	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767830105		P-0059999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	194	421	1	ENST00000543371.1:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000543371	NM_001198531.1	452	Ggg/Agg																																																																															
KDR	3791	MSKCC	GRCh37	4	55974004	55974004	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754979123		P-0059999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	166	541	0	ENST00000263923.4:c.1312G>A	p.Gly438Ser	p.G438S	ENST00000263923	NM_002253.2	438	Ggc/Agc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56488222	56488222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	238	566	0	ENST00000267101.3:c.1741G>A	p.Asp581Asn	p.D581N	ENST00000267101	NM_001982.3	581	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112176021	112176021	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0059999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	178	531	0	ENST00000257430.4:c.4731del	p.Glu1577AspfsTer73	p.E1577Dfs*73	ENST00000257430	NM_000038.5	1577	gAa/ga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953041	2953041	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149857605		P-0059999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	202	544	0	ENST00000396946.4:c.2899C>T	p.Arg967Cys	p.R967C	ENST00000396946	NM_032415.4	967	Cgc/Tgc																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434174	12434174	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	155	500	1	ENST00000287820.6:c.542G>T	p.Arg181Leu	p.R181L	ENST00000287820	NM_015869.4	181	cGg/cTg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430250	181430251	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0059999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	285	498	0	ENST00000325404.1:c.107dup	p.Asn36LysfsTer60	p.N36Kfs*60	ENST00000325404	NM_003106.3	34	-/A																																																																															
APC	324	MSKCC	GRCh37	5	112174004	112174007	+	frameshift_variant	Frame_Shift_Del	DEL	AGTT	AGTT	-			P-0059999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	198	571	0	ENST00000257430.4:c.2713_2716del	p.Ser905LeufsTer10	p.S905Lfs*10	ENST00000257430	NM_000038.5	905	AGTTct/ct																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370757	55370757	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0059999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	176	556	3	ENST00000297316.4:c.59del	p.Leu20ArgfsTer4	p.L20Rfs*4	ENST00000297316	NM_022454.3	20	cTg/cg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974770	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCCGT			P-0060013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	520	551	0	ENST00000304494.5:c.52_57dup	p.Thr18_Ala19dup	p.T18_A19dup	ENST00000304494	NM_000077.4	18	-/ACGGCC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0060013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	322	380	0	ENST00000269305.4:c.673-2A>C		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0060013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	192	257	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434555	49434555	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0060013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			724	67	584	0	ENST00000301067.7:c.6998C>A	p.Pro2333His	p.P2333H	ENST00000301067	NM_003482.3	2333	cCt/cAt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44833952	44833953	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0060013-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			52	121	90	0	ENST00000377967.4:c.377dup	p.Tyr126Ter	p.Y126*	ENST00000377967	NM_021140.2	126	tac/tAac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			858	135	766	3	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	32	525	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729153	66729153	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519856		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			688	139	695	0	ENST00000307102.5:c.361T>A	p.Cys121Ser	p.C121S	ENST00000307102	NM_002755.3	121	Tgc/Agc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	279	810	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			727	138	788	1	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28578215	28578216	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	71	561	0	ENST00000241453.7:c.2955_2956del	p.Pro986AlafsTer27	p.P986Afs*27	ENST00000241453	NM_004119.2	985	tcTCcg/tccg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	48	696	0	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974758	21974759	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	69	676	0	ENST00000304494.5:c.68dup	p.Arg24SerfsTer20	p.R24Sfs*20	ENST00000304494	NM_000077.4	23	ggt/ggGt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	115	737	1	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	61	723	0	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435153	110435153	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776792996		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	97	733	0	ENST00000375856.3:c.3248C>T	p.Pro1083Leu	p.P1083L	ENST00000375856	NM_003749.2	1083	cCg/cTg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781157	135781157	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			723	107	744	0	ENST00000298552.3:c.1808del	p.Pro603ArgfsTer26	p.P603Rfs*26	ENST00000298552	NM_001162426.1	603	cCg/cg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs769210858		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			711	53	681	1	ENST00000361632.4:c.1404del	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			710	93	671	1	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	89	452	8	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508995	106508995	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62001906		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			668	109	626	1	ENST00000359195.3:c.989C>T	p.Thr330Met	p.T330M	ENST00000359195	NM_002649.2	330	aCg/aTg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806180	1806181	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775260779		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			712	108	809	1	ENST00000260795.2:c.1206dup	p.Lys403GlnfsTer93	p.K403Qfs*93	ENST00000260795		400	agc/agCc																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348996	11348996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750257680		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	103	577	0	ENST00000332029.2:c.340G>A	p.Ala114Thr	p.A114T	ENST00000332029	NM_003745.1	114	Gcc/Acc																																																																															
ATR	545	MSKCC	GRCh37	3	142217557	142217557	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	57	412	0	ENST00000350721.4:c.5440del	p.Arg1814GlufsTer10	p.R1814Efs*10	ENST00000350721	NM_001184.3	1814	Aga/ga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	127	615	2	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																																																															
HGF	3082	MSKCC	GRCh37	7	81350062	81350062	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs759145490		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	49	330	0	ENST00000222390.5:c.1270C>T	p.Arg424Cys	p.R424C	ENST00000222390	NM_000601.4	424	Cgt/Tgt																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749490	41749490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	70	494	0	ENST00000226382.2:c.305G>A	p.Arg102His	p.R102H	ENST00000226382	NM_003924.3	102	cGc/cAc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	119	432	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841231	15841236	+	inframe_deletion	In_Frame_Del	DEL	AGCCGG	AGCCGG	-	rs768273733		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			820	93	888	1	ENST00000307771.7:c.1338_1343del	p.Ser447_Arg448del	p.S447_R448del	ENST00000307771	NM_005089.3	439	AGCCGG/-																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902658	1902658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761663126		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			808	60	732	0	ENST00000382891.5:c.277G>A	p.Ala93Thr	p.A93T	ENST00000382891	NM_133335.3	93	Gca/Aca																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78936277	78936277	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1476697249		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	79	581	0	ENST00000306801.3:c.3709C>T	p.Arg1237Cys	p.R1237C	ENST00000306801	NM_020761.2	1237	Cgc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108121531	108121531	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779815		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			574	94	534	0	ENST00000278616.4:c.1339C>T	p.Arg447Ter	p.R447*	ENST00000278616	NM_000051.3	447	Cga/Tga																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562756	21562756	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs12867400		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	89	700	0	ENST00000382592.4:c.1163C>T	p.Ala388Val	p.A388V	ENST00000382592	NM_014572.2	388	gCg/gTg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911107	29911107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	111	485	0	ENST00000376809.5:c.406G>A	p.Gly136Arg	p.G136R	ENST00000376809	NM_002116.7	136	Ggg/Agg																																																																															
MED12	9968	MSKCC	GRCh37	X	70361098	70361103	+	inframe_deletion	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	rs1426680322		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			851	55	714	2	ENST00000374080.3:c.6303_6308del	p.Gln2114_Gln2115del	p.Q2114_Q2115del	ENST00000374080		2096	CAGCAG/-																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123276974	123276974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121918504		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	89	599	0	ENST00000358487.5:c.943G>A	p.Ala315Thr	p.A315T	ENST00000358487	NM_000141.4	315	Gcc/Acc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641768	23641768	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	67	340	0	ENST00000261584.4:c.1707del	p.Glu570ArgfsTer29	p.E570Rfs*29	ENST00000261584	NM_024675.3	569	aaA/aa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265385	10265385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397509392		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			754	137	768	0	ENST00000340748.4:c.1661C>T	p.Ala554Val	p.A554V	ENST00000340748		554	gCg/gTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435455	56435455	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs553934414		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	160	763	0	ENST00000407977.2:c.1682G>A	p.Arg561Gln	p.R561Q	ENST00000407977		561	cGg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836295	151836295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	118	569	0	ENST00000262189.6:c.14510C>T	p.Ala4837Val	p.A4837V	ENST00000262189	NM_170606.2	4837	gCg/gTg																																																																															
MET	4233	MSKCC	GRCh37	7	116340270	116340270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749738523		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	32	510	0	ENST00000397752.3:c.1132G>A	p.Val378Ile	p.V378I	ENST00000397752	NM_000245.2	378	Gtc/Atc																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182665110	182665110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1361986556		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	26	277	0	ENST00000292782.4:c.616C>T	p.Arg206Ter	p.R206*	ENST00000292782	NM_020640.2	206	Cga/Tga																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50483697	50483697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	56	342	0	ENST00000394963.4:c.802G>A	p.Asp268Asn	p.D268N	ENST00000394963	NM_003076.4	268	Gat/Aat																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852590	63852590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	97	573	0	ENST00000279873.7:c.3368C>T	p.Ser1123Leu	p.S1123L	ENST00000279873	NM_032199.2	1123	tCg/tTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421834	49421834	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs117904191		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			868	120	821	0	ENST00000301067.7:c.14473C>T	p.Arg4825Trp	p.R4825W	ENST00000301067	NM_003482.3	4825	Cgg/Tgg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10260325	10260325	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757300501		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	122	693	0	ENST00000340748.4:c.2342C>T	p.Ala781Val	p.A781V	ENST00000340748		781	gCg/gTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864646	68864646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	65	385	0	ENST00000288368.4:c.17G>A	p.Arg6His	p.R6H	ENST00000288368	NM_024870.2	6	cGc/cAc																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2096344	2096344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1210160367		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	111	643	1	ENST00000219066.1:c.163G>A	p.Val55Met	p.V55M	ENST00000219066	NM_002528.5	55	Gtg/Atg																																																																															
ATR	545	MSKCC	GRCh37	3	142186774	142186774	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	41	326	0	ENST00000350721.4:c.6687+2T>C		p.X2229_splice	ENST00000350721	NM_001184.3	2229																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81971470	81971470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	110	659	0	ENST00000359376.3:c.3160G>A	p.Glu1054Lys	p.E1054K	ENST00000359376	NM_002661.3	1054	Gag/Aag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	109	586	2	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67201870	67201870	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	129	718	0	ENST00000312629.5:c.1070A>G	p.Gln357Arg	p.Q357R	ENST00000312629	NM_003952.2	357	cAg/cGg																																																																															
ATM	472	MSKCC	GRCh37	11	108117785	108117787	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	39	325	0	ENST00000278616.4:c.999_1001del	p.Ser334del	p.S334del	ENST00000278616	NM_000051.3	332	taTTCt/tat																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945013	31945013	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs879142499		P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			840	128	754	0	ENST00000340398.3:c.88A>G	p.Thr30Ala	p.T30A	ENST00000340398	NM_001013699.2	30	Acc/Gcc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643276	38643276	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	37	466	0	ENST00000299084.4:c.746A>G	p.Asn249Ser	p.N249S	ENST00000299084	NM_152594.2	249	aAc/aGc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43714123	43714124	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			746	120	754	0	ENST00000382044.4:c.4029_4030del	p.Gly1344GlufsTer25	p.G1344Efs*25	ENST00000382044	NM_001141980.1	1343	agAGgg/aggg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56792499	56792499	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	115	544	0	ENST00000308159.5:c.229C>T	p.Arg77Ter	p.R77*	ENST00000308159	NM_014669.4	77	Cga/Tga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346574	89346574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	86	804	0	ENST00000301030.4:c.6376G>A	p.Gly2126Ser	p.G2126S	ENST00000301030	NM_001256183.1	2126	Ggc/Agc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308441	30308441	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	73	555	0	ENST00000262643.3:c.455T>C	p.Leu152Ser	p.L152S	ENST00000262643	NM_001238.2	152	tTa/tCa																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868371	45868371	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	124	660	0	ENST00000391945.4:c.406A>G	p.Ser136Gly	p.S136G	ENST00000391945	NM_000400.3	136	Agc/Ggc																																																																															
ALK	238	MSKCC	GRCh37	2	29474001	29474001	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	93	607	0	ENST00000389048.3:c.2174T>A	p.Ile725Asn	p.I725N	ENST00000389048	NM_004304.4	725	aTc/aAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248726	212248727	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	87	526	0	ENST00000342788.4:c.3540dup	p.Gln1181SerfsTer5	p.Q1181Sfs*5	ENST00000342788	NM_005235.2	1180	-/T																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661399	227661399	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	65	694	0	ENST00000305123.5:c.2056A>C	p.Ser686Arg	p.S686R	ENST00000305123	NM_005544.2	686	Agc/Cgc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31451701	31451701	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	84	424	0	ENST00000344624.3:c.2621A>G	p.Gln874Arg	p.Q874R	ENST00000344624		874	cAa/cGa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192437	138192437	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	34	566	0	ENST00000237289.4:c.73A>G	p.Thr25Ala	p.T25A	ENST00000237289	NM_001270507.1	25	Act/Gct																																																																															
HGF	3082	MSKCC	GRCh37	7	81381573	81381573	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	47	386	0	ENST00000222390.5:c.488del	p.Leu163CysfsTer50	p.L163Cfs*50	ENST00000222390	NM_000601.4	163	tTg/tg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151960164	151960164	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	26	251	0	ENST00000262189.6:c.1236del	p.Tyr413IlefsTer10	p.Y413Ifs*10	ENST00000262189	NM_170606.2	412	ggG/gg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117869653	117869653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	72	431	0	ENST00000297338.2:c.541G>A	p.Asp181Asn	p.D181N	ENST00000297338	NM_006265.2	181	Gac/Aac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400156	139400156	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	105	816	0	ENST00000277541.6:c.4192T>G	p.Tyr1398Asp	p.Y1398D	ENST00000277541	NM_017617.3	1398	Tac/Gac																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858134	152858134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059873-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	127	714	0	ENST00000406277.2:c.481C>T	p.Arg161Trp	p.R161W	ENST00000406277	NM_152274.4	161	Cgg/Tgg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	170	485	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605102	46605102	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs540130771		P-0042322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	277	556	0	ENST00000263734.3:c.1319C>T	p.Thr440Met	p.T440M	ENST00000263734	NM_001430.4	440	aCg/aTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912745	32912745	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	120	448	0	ENST00000380152.3:c.4253T>A	p.Ile1418Lys	p.I1418K	ENST00000380152		1418	aTa/aAa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983963	15983964	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			91	354	440	0	ENST00000268712.3:c.3255_3256insC	p.Ile1086HisfsTer35	p.I1086Hfs*35	ENST00000268712	NM_006311.3	1085	-/C																																																																															
NF1	4763	MSKCC	GRCh37	17	29683531	29683531	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	248	398	0	ENST00000358273.4:c.7669C>T	p.Gln2557Ter	p.Q2557*	ENST00000358273	NM_001042492.2	2557	Caa/Taa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660688	227660688	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	345	668	0	ENST00000305123.5:c.2767T>G	p.Cys923Gly	p.C923G	ENST00000305123	NM_005544.2	923	Tgt/Ggt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183346	56183346	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0042322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			62	247	380	0	ENST00000399503.3:c.4256A>T	p.Glu1419Val	p.E1419V	ENST00000399503	NM_005921.1	1419	gAg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882019		P-0059533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			164	314	530	0	ENST00000269305.4:c.455dup	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0059533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	253	266	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375486	15375486	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			442	185	505	0	ENST00000263377.2:c.941A>G	p.Lys314Arg	p.K314R	ENST00000263377	NM_058243.2	314	aAg/aGg																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792812	33792812	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			397	187	281	0	ENST00000498907.2:c.509C>G	p.Ala170Gly	p.A170G	ENST00000498907	NM_004364.3	170	gCc/gGc																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032109	26032109	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			812	188	624	0	ENST00000244661.2:c.180G>C	p.Glu60Asp	p.E60D	ENST00000244661	NM_003537.3	60	gaG/gaC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240698	55240698	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			126	448	525	0	ENST00000275493.2:c.1942A>T	p.Thr648Ser	p.T648S	ENST00000275493	NM_005228.3	648	Act/Tct																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781245	135781246	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CTGGCATTCCCTGTCTCCCGCAGGGCTTTCATCAGCA			P-0059533-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			646	157	553	0	ENST00000298552.3:c.1683_1719dup	p.Thr574CysfsTer2	p.T574Cfs*2	ENST00000298552	NM_001162426.1	573	-/TGCTGATGAAAGCCCTGCGGGAGACAGGGAATGCCAG																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971105	21971105	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	316	681	0	ENST00000304494.5:c.253G>C	p.Ala85Pro	p.A85P	ENST00000304494	NM_000077.4	85	Gct/Cct																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736165	204736166	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0059706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	102	531	1	ENST00000302823.3:c.529dup	p.Tyr177LeufsTer2	p.Y177Lfs*2	ENST00000302823	NM_005214.4	174	-/T																																																																															
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0059706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			378	273	609	0	ENST00000269305.4:c.993+2T>C		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8436603	8436603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	153	341	0	ENST00000356435.5:c.4075C>A	p.Gln1359Lys	p.Q1359K	ENST00000356435		1359	Cag/Aag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245873	41245873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	83	459	0	ENST00000357654.3:c.1675G>T	p.Gly559Cys	p.G559C	ENST00000357654	NM_007294.3	559	Ggt/Tgt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576240	88576240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	163	616	0	ENST00000360948.2:c.1433C>A	p.Ala478Asp	p.A478D	ENST00000360948	NM_001012338.2	478	gCc/gAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599867	10599867	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0059706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	266	624	0	ENST00000171111.5:c.1708+1G>T		p.X570_splice	ENST00000171111	NM_203500.1	570																																																																																
GATA3	2625	MSKCC	GRCh37	10	8097855	8097855	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	210	646	0	ENST00000346208.3:c.237C>A	p.His79Gln	p.H79Q	ENST00000346208		79	caC/caA																																																																															
ATM	472	MSKCC	GRCh37	11	108117745	108117745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	73	358	0	ENST00000278616.4:c.956T>C	p.Leu319Pro	p.L319P	ENST00000278616	NM_000051.3	319	cTa/cCa																																																																															
ATM	472	MSKCC	GRCh37	11	108153482	108153482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	80	349	0	ENST00000278616.4:c.3622G>C	p.Asp1208His	p.D1208H	ENST00000278616	NM_000051.3	1208	Gac/Cac																																																																															
KDM5A	5927	MSKCC	GRCh37	12	461428	461428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	98	387	0	ENST00000399788.2:c.1092G>T	p.Gln364His	p.Q364H	ENST00000399788	NM_001042603.1	364	caG/caT																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18491401	18491401	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	124	397	0	ENST00000266497.5:c.1314C>A	p.Cys438Ter	p.C438*	ENST00000266497		438	tgC/tgA																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117322	115117322	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0059706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	162	466	0	ENST00000257566.3:c.852C>G	p.Tyr284Ter	p.Y284*	ENST00000257566	NM_016569.3	284	taC/taG																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347071	347071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	113	541	0	ENST00000262320.3:c.1940G>T	p.Arg647Leu	p.R647L	ENST00000262320	NM_003502.3	647	cGc/cTc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627434	37627434	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	263	643	0	ENST00000447079.4:c.1349G>T	p.Ser450Ile	p.S450I	ENST00000447079	NM_015083.1	450	aGt/aTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144062	11144062	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	246	656	0	ENST00000344626.4:c.3643C>G	p.Leu1215Val	p.L1215V	ENST00000344626	NM_003072.3	1215	Cta/Gta																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52723088	52723088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	226	609	0	ENST00000322088.6:c.1273G>A	p.Glu425Lys	p.E425K	ENST00000322088	NM_014225.5	425	Gag/Aag																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116164	209116164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	247	465	0	ENST00000345146.2:c.112G>T	p.Asp38Tyr	p.D38Y	ENST00000345146	NM_005896.2	38	Gat/Tat																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265219	46265219	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	260	634	0	ENST00000371998.3:c.2089G>C	p.Glu697Gln	p.E697Q	ENST00000371998		697	Gag/Cag																																																																															
ATR	545	MSKCC	GRCh37	3	142180811	142180811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	175	368	0	ENST00000350721.4:c.7163C>T	p.Pro2388Leu	p.P2388L	ENST00000350721	NM_001184.3	2388	cCt/cTt																																																																															
TERT	7015	MSKCC	GRCh37	5	1272328	1272328	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	183	565	0	ENST00000310581.5:c.2354C>A	p.Pro785Gln	p.P785Q	ENST00000310581	NM_198253.2	785	cCg/cAg																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031887	26031887	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0059706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	135	624	0	ENST00000244661.2:c.402A>C	p.Glu134Asp	p.E134D	ENST00000244661	NM_003537.3	134	gaA/gaC																																																																															
HGF	3082	MSKCC	GRCh37	7	81335740	81335740	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	175	394	0	ENST00000222390.5:c.1620C>A	p.Asp540Glu	p.D540E	ENST00000222390	NM_000601.4	540	gaC/gaA																																																																															
PREX2	80243	MSKCC	GRCh37	8	68939505	68939505	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0059706-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	148	390	0	ENST00000288368.4:c.490G>T	p.Gly164Ter	p.G164*	ENST00000288368	NM_024870.2	164	Gga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059759-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	22	271	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0059760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	119	335	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0059760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	69	343	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129884	55129884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs574683248		P-0059760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	47	392	0	ENST00000257290.5:c.418G>A	p.Val140Met	p.V140M	ENST00000257290	NM_006206.4	140	Gtg/Atg																																																																															
MITF	4286	MSKCC	GRCh37	3	70014170	70014170	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769488988		P-0059760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	71	482	0	ENST00000352241.4:c.1334C>T	p.Thr445Met	p.T445M	ENST00000352241	NM_198159.2	445	aCg/aTg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169999684	169999684	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059760-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			112	18	151	0	ENST00000295797.4:c.995T>C	p.Ile332Thr	p.I332T	ENST00000295797	NM_002740.5	332	aTa/aCa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692891	89692891	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	31	238	1	ENST00000371953.3:c.375A>T	p.Lys125Asn	p.K125N	ENST00000371953	NM_000314.4	125	aaA/aaT																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712760	43712760	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	74	536	0	ENST00000382044.4:c.4424C>G	p.Ala1475Gly	p.A1475G	ENST00000382044	NM_001141980.1	1475	gCt/gGt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636978	176636978	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059769-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			350	21	517	0	ENST00000439151.2:c.1578G>C	p.Arg526Ser	p.R526S	ENST00000439151	NM_022455.4	526	agG/agC																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857425	9857425	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1268143219		P-0059773-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	50	499	0	ENST00000330684.3:c.3976G>A	p.Gly1326Ser	p.G1326S	ENST00000330684	NM_001134407.1	1326	Ggc/Agc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239981	98239981	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142791675		P-0059773-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	77	348	0	ENST00000331920.6:c.1351G>A	p.Ala451Thr	p.A451T	ENST00000331920	NM_000264.3	451	Gcc/Acc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426141	49426142	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0059773-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	41	528	1	ENST00000301067.7:c.12346dup	p.His4116ProfsTer11	p.H4116Pfs*11	ENST00000301067	NM_003482.3	4116	cat/cCat																																																																															
CIC	23152	MSKCC	GRCh37	19	42795295	42795295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059773-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	33	426	0	ENST00000575354.2:c.2375C>A	p.Ala792Glu	p.A792E	ENST00000575354	NM_015125.3	792	gCg/gAg																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23539036	23539036	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059773-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	72	549	0	ENST00000380871.4:c.403C>A	p.Gln135Lys	p.Q135K	ENST00000380871	NM_006167.3	135	Cag/Aag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0059775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	23	457	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248150	110248150	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	39	404	0	ENST00000374672.4:c.1322A>G	p.Asp441Gly	p.D441G	ENST00000374672	NM_004235.4	441	gAt/gGt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946337	2946337	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759681668		P-0059775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	27	419	0	ENST00000396946.4:c.3400G>A	p.Val1134Ile	p.V1134I	ENST00000396946	NM_032415.4	1134	Gtt/Att																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444689	49444689	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200825022		P-0059775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			606	39	601	0	ENST00000301067.7:c.2777C>T	p.Ser926Leu	p.S926L	ENST00000301067	NM_003482.3	926	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0059775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	33	331	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
BARD1	580	MSKCC	GRCh37	2	215657161	215657192	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACACAATTACTTTAAAATAATTAAAAAAAAAA	ACACAATTACTTTAAAATAATTAAAAAAAAAA	-			P-0059775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	19	394	0	ENST00000260947.4:c.216-23_224del		p.X72_splice	ENST00000260947	NM_000465.2	72																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0059870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	133	352	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243776981	243776981	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	158	374	0	ENST00000263826.5:c.688G>T	p.Gly230Trp	p.G230W	ENST00000263826	NM_005465.4	230	Ggg/Tgg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625399	69625399	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			844	107	730	0	ENST00000334134.2:c.394C>G	p.Arg132Gly	p.R132G	ENST00000334134	NM_005247.2	132	Cgg/Ggg																																																																															
CCND2	894	MSKCC	GRCh37	12	4409162	4409162	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			869	99	599	0	ENST00000261254.3:c.857A>T	p.Asp286Val	p.D286V	ENST00000261254	NM_001759.3	286	gAt/gTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446410	49446410	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			831	232	677	0	ENST00000301067.7:c.1195G>T	p.Gly399Trp	p.G399W	ENST00000301067	NM_003482.3	399	Ggg/Tgg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39584413	39584413	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	190	535	0	ENST00000262039.4:c.1078G>T	p.Val360Leu	p.V360L	ENST00000262039	NM_002647.2	360	Gta/Tta																																																																															
BCL2	596	MSKCC	GRCh37	18	60985790	60985790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			724	65	618	0	ENST00000333681.4:c.110C>T	p.Ala37Val	p.A37V	ENST00000333681		37	gCc/gTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276798	15276798	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			885	243	739	0	ENST00000263388.2:c.5467G>C	p.Asp1823His	p.D1823H	ENST00000263388	NM_000435.2	1823	Gac/Cac																																																																															
TOP1	7150	MSKCC	GRCh37	20	39657718	39657718	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	160	459	0	ENST00000361337.2:c.11A>G	p.Asp4Gly	p.D4G	ENST00000361337	NM_003286.2	4	gAc/gGc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131927080	131927080	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059870-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	120	466	0	ENST00000265335.6:c.1617G>C	p.Glu539Asp	p.E539D	ENST00000265335		539	gaG/gaC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0059871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	177	483	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085681	16085681	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762164859		P-0059871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	109	473	0	ENST00000281043.3:c.857G>A	p.Arg286His	p.R286H	ENST00000281043	NM_005378.4	286	cGt/cAt																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374998	149374998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059871-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	104	586	0	ENST00000360632.3:c.96C>A	p.Phe32Leu	p.F32L	ENST00000360632	NM_015472.4	32	ttC/ttA																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721673	176721673	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0059875-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	46	733	0	ENST00000439151.2:c.7304A>C	p.Lys2435Thr	p.K2435T	ENST00000439151	NM_022455.4	2435	aAa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578217	7578217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059881-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	394	734	1	ENST00000269305.4:c.632C>T	p.Thr211Ile	p.T211I	ENST00000269305	NM_001126112.2	211	aCt/aTt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739038	145739038	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059881-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1421	131	762	0	ENST00000428558.2:c.2117A>G	p.Tyr706Cys	p.Y706C	ENST00000428558	NM_004260.3	706	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059881-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	506	384	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354369	354369	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059881-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	34	559	0	ENST00000262320.3:c.1189G>T	p.Glu397Ter	p.E397*	ENST00000262320	NM_003502.3	397	Gag/Tag																																																																															
XPO1	7514	MSKCC	GRCh37	2	61726988	61727044	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATAAAAGTTGGCCAATGTTTGGGCCATTCTTGTTTCAGTATCTAAAACAAGACATG	GATAAAAGTTGGCCAATGTTTGGGCCATTCTTGTTTCAGTATCTAAAACAAGACATG	CAT			P-0059881-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	201	430	2	ENST00000401558.2:c.409-15_450delinsATG		p.X137_splice	ENST00000401558	NM_003400.3	137																																																																																
SETD2	29072	MSKCC	GRCh37	3	47161671	47161671	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0059881-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	154	288	0	ENST00000409792.3:c.4454+1G>T		p.X1485_splice	ENST00000409792	NM_014159.6	1485																																																																																
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0059885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	87	398	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427537	49427537	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0059885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			647	99	674	0	ENST00000301067.7:c.10951C>T	p.Gln3651Ter	p.Q3651*	ENST00000301067	NM_003482.3	3651	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112178010	112178010	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	82	528	0	ENST00000257430.4:c.6719C>G	p.Ser2240Cys	p.S2240C	ENST00000257430	NM_000038.5	2240	tCc/tGc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123234428	123234428	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0059885-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			49	34	134	0	ENST00000218089.9:c.3788T>G	p.Leu1263Arg	p.L1263R	ENST00000218089	NM_001042749.1	1263	cTt/cGt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610247	10610247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	132	731	0	ENST00000171111.5:c.463G>T	p.Val155Phe	p.V155F	ENST00000171111	NM_203500.1	155	Gtc/Ttc																																																																															
HGF	3082	MSKCC	GRCh37	7	81336625	81336625	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs527951814		P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	67	349	0	ENST00000222390.5:c.1597C>T	p.Arg533Ter	p.R533*	ENST00000222390	NM_000601.4	533	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	195	776	0	ENST00000269305.4:c.470T>A	p.Val157Asp	p.V157D	ENST00000269305	NM_001126112.2	157	gTc/gAc																																																																															
ALK	238	MSKCC	GRCh37	2	29917805	29917805	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	50	663	0	ENST00000389048.3:c.863G>A	p.Trp288Ter	p.W288*	ENST00000389048	NM_004304.4	288	tGg/tAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411993	63411993	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	191	869	0	ENST00000330258.3:c.1174G>T	p.Glu392Ter	p.E392*	ENST00000330258	NM_152424.3	392	Gag/Tag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89842183	89842183	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	35	574	0	ENST00000389301.3:c.1867C>T	p.Gln623Ter	p.Q623*	ENST00000389301	NM_000135.2	623	Cag/Tag																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748056	72748056	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			594	124	729	0	ENST00000357731.5:c.122C>G	p.Pro41Arg	p.P41R	ENST00000357731	NM_173808.2	41	cCc/cGc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165812	118165812	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	229	738	0	ENST00000369448.3:c.322G>T	p.Val108Phe	p.V108F	ENST00000369448	NM_017709.3	108	Gtt/Ttt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012862	176012863	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	107	372	0	ENST00000367669.3:c.1513_1514del	p.Arg505ValfsTer8	p.R505Vfs*8	ENST00000367669	NM_022457.5	505	AGg/g																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828170	243828170	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	79	293	0	ENST00000263826.5:c.188A>T	p.Lys63Ile	p.K63I	ENST00000263826	NM_005465.4	63	aAa/aTa																																																																															
RET	5979	MSKCC	GRCh37	10	43597940	43597940	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	189	851	0	ENST00000355710.3:c.488G>T	p.Arg163Leu	p.R163L	ENST00000355710	NM_020975.4	163	cGg/cTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913180	32913180	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	122	618	0	ENST00000380152.3:c.4688G>T	p.Trp1563Leu	p.W1563L	ENST00000380152		1563	tGg/tTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514693	103514693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	86	757	0	ENST00000355739.4:c.1194C>A	p.Asp398Glu	p.D398E	ENST00000355739	NM_000123.3	398	gaC/gaA																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51507938	51507938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	52	403	0	ENST00000396402.1:c.820G>A	p.Glu274Lys	p.E274K	ENST00000396402	NM_000103.3	274	Gaa/Aaa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56866294	56866294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	29	509	0	ENST00000308159.5:c.1339G>T	p.Asp447Tyr	p.D447Y	ENST00000308159	NM_014669.4	447	Gac/Tac																																																																															
NF1	4763	MSKCC	GRCh37	17	29663484	29663484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	86	537	0	ENST00000358273.4:c.6140C>T	p.Ser2047Leu	p.S2047L	ENST00000358273	NM_001042492.2	2047	tCa/tTa																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428353	33428353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	116	587	0	ENST00000335858.7:c.434G>A	p.Ser145Asn	p.S145N	ENST00000335858	NM_133629.2	145	aGc/aAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117919	70117919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	164	836	1	ENST00000245479.2:c.387C>A	p.His129Gln	p.H129Q	ENST00000245479	NM_000346.3	129	caC/caA																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39542598	39542598	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	175	570	0	ENST00000262039.4:c.401+1G>A		p.X134_splice	ENST00000262039	NM_002647.2	134																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36223212	36223212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	365	1050	0	ENST00000222270.7:c.5762C>A	p.Pro1921His	p.P1921H	ENST00000222270	NM_014727.1	1921	cCc/cAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543797	212543797	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	161	548	0	ENST00000342788.4:c.1602G>T	p.Glu534Asp	p.E534D	ENST00000342788	NM_005235.2	534	gaG/gaT																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280768	41280768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	188	688	2	ENST00000349496.5:c.2281G>A	p.Asp761Asn	p.D761N	ENST00000349496	NM_001904.3	761	Gac/Aac																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138431093	138431093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	34	359	0	ENST00000289153.2:c.1356G>T	p.Leu452Phe	p.L452F	ENST00000289153	NM_006219.2	452	ttG/ttT																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149452973	149452974	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	138	629	0	ENST00000286301.3:c.972_973delinsTT	p.Met324_Val325delinsIleLeu	p.M324_V325delinsIL	ENST00000286301	NM_005211.3	324	atGGtg/atTTtg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2985579	2985579	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	192	563	0	ENST00000396946.4:c.232G>T	p.Asp78Tyr	p.D78Y	ENST00000396946	NM_032415.4	78	Gac/Tac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012286	152012286	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	93	518	0	ENST00000262189.6:c.527A>G	p.Asn176Ser	p.N176S	ENST00000262189	NM_170606.2	176	aAc/aGc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020415	69020415	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	65	568	0	ENST00000288368.4:c.2787C>A	p.His929Gln	p.H929Q	ENST00000288368	NM_024870.2	929	caC/caA																																																																															
JAK2	3717	MSKCC	GRCh37	9	5123026	5123026	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	104	533	0	ENST00000381652.3:c.3082G>T	p.Glu1028Ter	p.E1028*	ENST00000381652	NM_004972.3	1028	Gag/Tag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223899	53223899	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059890-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	139	753	0	ENST00000375401.3:c.3460G>T	p.Glu1154Ter	p.E1154*	ENST00000375401	NM_004187.3	1154	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0059892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			576	189	538	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424840	47424841	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0059892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			899	131	603	0	ENST00000404338.3:c.2914dup	p.Arg972ProfsTer40	p.R972Pfs*40	ENST00000404338	NM_004491.4	970	tcc/tCcc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100975	41100975	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0059892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			700	336	667	0	ENST00000373198.4:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000373198	NM_133170.3	461	Cga/Tga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52613155	52613155	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0059892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			543	195	512	0	ENST00000394830.3:c.3373C>T	p.Gln1125Ter	p.Q1125*	ENST00000394830	NM_018313.4	1125	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0059892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			748	2489	406	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484363	8484363	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	86	376	0	ENST00000356435.5:c.3169G>T	p.Gly1057Trp	p.G1057W	ENST00000356435		1057	Ggg/Tgg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499771	8499771	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	197	494	0	ENST00000356435.5:c.2198G>T	p.Arg733Leu	p.R733L	ENST00000356435		733	cGc/cTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045133	47045134	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0059892-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			785	98	627	0	ENST00000329236.7:c.2142dup	p.Arg715AlafsTer16	p.R715Afs*16	ENST00000329236	NM_001204466.1	714	cgg/cGgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0059893-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	267	521	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059893-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	107	461	0	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913558	32913559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1265028174		P-0059893-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	58	336	0	ENST00000380152.3:c.5073dup	p.Trp1692MetfsTer3	p.W1692Mfs*3	ENST00000380152		1689	gca/gcAa																																																																															
APC	324	MSKCC	GRCh37	5	112170652	112170652	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059893-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	125	316	0	ENST00000257430.4:c.1748C>A	p.Ser583Ter	p.S583*	ENST00000257430	NM_000038.5	583	tCa/tAa																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607771	46607771	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375135104		P-0059893-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	151	605	0	ENST00000263734.3:c.1960G>A	p.Val654Ile	p.V654I	ENST00000263734	NM_001430.4	654	Gtc/Atc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151927393	151927393	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059893-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			22	24	33	0	ENST00000262189.6:c.2783A>G	p.Asp928Gly	p.D928G	ENST00000262189	NM_170606.2	928	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578232	7578232	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0059901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	321	781	2	ENST00000269305.4:c.617del	p.Leu206TrpfsTer41	p.L206Wfs*41	ENST00000269305	NM_001126112.2	206	tTg/tg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089754	27089754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	178	742	0	ENST00000324856.7:c.2710G>A	p.Ala904Thr	p.A904T	ENST00000324856	NM_006015.4	904	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0058593-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			719	69	754	1	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983148	149983148	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0058593-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			611	40	495	0	ENST00000253339.5:c.3110C>G	p.Ser1037Ter	p.S1037*	ENST00000253339		1037	tCa/tGa																																																																															
RB1	5925	MSKCC	GRCh37	13	48953728	48953728	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0058593-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			272	12	178	0	ENST00000267163.4:c.1333-2A>G		p.X445_splice	ENST00000267163	NM_000321.2	445																																																																																
RPTOR	57521	MSKCC	GRCh37	17	78681755	78681755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058593-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			539	34	517	0	ENST00000306801.3:c.463G>T	p.Val155Leu	p.V155L	ENST00000306801	NM_020761.2	155	Gtg/Ttg																																																																															
CALR	811	MSKCC	GRCh37	19	13051244	13051244	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058593-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			772	60	664	0	ENST00000316448.5:c.680A>G	p.Asp227Gly	p.D227G	ENST00000316448	NM_004343.3	227	gAt/gGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449755	8449755	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0058593-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			598	90	458	0	ENST00000356435.5:c.3958G>T	p.Glu1320Ter	p.E1320*	ENST00000356435		1320	Gaa/Taa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207203	1207203	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0059012-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			268	195	182	0	ENST00000326873.7:c.290+1G>T		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																																
SOCS1	8651	MSKCC	GRCh37	16	11348782	11348782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059012-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			507	72	287	0	ENST00000332029.2:c.554C>T	p.Thr185Ile	p.T185I	ENST00000332029	NM_003745.1	185	aCc/aTc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435238	18435238	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059012-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	227	574	0	ENST00000266497.5:c.223G>T	p.Gly75Trp	p.G75W	ENST00000266497		75	Ggg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059012-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			196	77	296	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176145102	176145102	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059012-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			333	32	362	0	ENST00000367669.3:c.509G>T	p.Cys170Phe	p.C170F	ENST00000367669	NM_022457.5	170	tGt/tTt																																																																															
TET1	80312	MSKCC	GRCh37	10	70333398	70333398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059012-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	115	475	0	ENST00000373644.4:c.1303G>T	p.Val435Phe	p.V435F	ENST00000373644	NM_030625.2	435	Gtt/Ttt																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544966	86544966	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059012-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			379	55	287	0	ENST00000262426.4:c.791C>A	p.Ser264Ter	p.S264*	ENST00000262426	NM_001451.2	264	tCg/tAg																																																																															
SMO	6608	MSKCC	GRCh37	7	128852020	128852020	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059012-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			398	104	446	0	ENST00000249373.3:c.2092C>G	p.Pro698Ala	p.P698A	ENST00000249373	NM_005631.4	698	Ccc/Gcc																																																																															
XIAP	331	MSKCC	GRCh37	X	123019976	123019976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059012-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			443	46	379	1	ENST00000355640.3:c.464C>T	p.Pro155Leu	p.P155L	ENST00000355640		155	cCg/cTg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0059239-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			188	29	364	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746017	162746017	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059239-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			327	46	534	0	ENST00000367921.3:c.2140C>T	p.Arg714Ter	p.R714*	ENST00000367921	NM_006182.2	714	Cga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1207037	1207037	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059239-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			293	57	651	0	ENST00000326873.7:c.127del	p.Ala43ProfsTer8	p.A43Pfs*8	ENST00000326873	NM_000455.4	42	cGg/cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059239-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			140	37	294	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575048	64575052	+	frameshift_variant	Frame_Shift_Del	DEL	CGAGT	CGAGT	-			P-0059239-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			322	55	588	0	ENST00000337652.1:c.770_774del	p.Asp257AlafsTer16	p.D257Afs*16	ENST00000337652	NM_130803.2	257	gACTCG/g																																																																															
RB1	5925	MSKCC	GRCh37	13	48955548	48955570	+	frameshift_variant	Frame_Shift_Del	DEL	ATCGAATCATGGAATCCCTTGCA	ATCGAATCATGGAATCCCTTGCA	-			P-0059239-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			111	17	159	0	ENST00000267163.4:c.1664_1686del	p.His555LeufsTer9	p.H555Lfs*9	ENST00000267163	NM_000321.2	555	cATCGAATCATGGAATCCCTTGCA/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7577468	7577508	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCAGTGTGCAGGGTGGCAAGTGGCTCCTGACCTGGAGTCTT	CCAGTGTGCAGGGTGGCAAGTGGCTCCTGACCTGGAGTCTT	-			P-0059239-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			224	40	464	0	ENST00000269305.4:c.773_782+31del		p.X258_splice	ENST00000269305	NM_001126112.2	258																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89259309	89259309	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0059239-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			228	32	438	0	ENST00000336596.2:c.455del	p.Phe152SerfsTer11	p.F152Sfs*11	ENST00000336596	NM_005233.5	151	agT/ag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0059463-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			740	1422	472	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574000	7574000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059463-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			475	105	415	0	ENST00000269305.4:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000269305	NM_001126112.2	343	Gag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528621	89528621	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780470195		P-0059463-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			557	43	334	0	ENST00000336596.2:c.2921C>T	p.Thr974Met	p.T974M	ENST00000336596	NM_005233.5	974	aCg/aTg																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872053	35872053	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0059463-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			928	80	511	0	ENST00000216797.5:c.560T>G	p.Leu187Arg	p.L187R	ENST00000216797	NM_020529.2	187	cTa/cGa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041348	47041348	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0059463-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			411	70	342	0	ENST00000329236.7:c.1460-2A>G		p.X487_splice	ENST00000329236	NM_001204466.1	487																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31495464	31495464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059782-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	26	410	0	ENST00000344624.3:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000344624		562	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0059783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	44	565	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678619	88678619	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148888023		P-0059783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	54	525	0	ENST00000360948.2:c.917G>A	p.Arg306His	p.R306H	ENST00000360948	NM_001012338.2	306	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604707	48604707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	78	499	0	ENST00000342988.3:c.1529G>A	p.Gly510Glu	p.G510E	ENST00000342988	NM_005359.5	510	gGa/gAa																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4110556	4110556	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs727504370		P-0059783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	52	616	0	ENST00000262948.5:c.401A>G	p.Tyr134Cys	p.Y134C	ENST00000262948	NM_030662.3	134	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0059783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	77	268	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152860036	152860036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059783-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	42	548	0	ENST00000406277.2:c.392G>A	p.Arg131His	p.R131H	ENST00000406277	NM_152274.4	131	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0059785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	224	474	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243416	46243419	+	frameshift_variant	Frame_Shift_Del	DEL	GGCA	GGCA	-			P-0059785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	86	294	0	ENST00000334344.6:c.1773_1776del	p.Gln591HisfsTer6	p.Q591Hfs*6	ENST00000334344	NM_152641.2	590	gGGCAg/gg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109792	115109807	+	frameshift_variant	Frame_Shift_Del	DEL	AGCGGCTGTTGAGTTC	AGCGGCTGTTGAGTTC	-			P-0059785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			210	202	489	2	ENST00000257566.3:c.2071_2086del	p.Glu691ProfsTer193	p.E691Pfs*193	ENST00000257566	NM_016569.3	691	GAACTCAACAGCCGCTcc/cc																																																																															
APC	324	MSKCC	GRCh37	5	112175729	112175747	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGTTCTTCCAGATGCTG	CAGGTTCTTCCAGATGCTG	-			P-0059785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	125	465	0	ENST00000257430.4:c.4438_4456del	p.Gln1480IlefsTer21	p.Q1480Ifs*21	ENST00000257430	NM_000038.5	1480	CAGGTTCTTCCAGATGCTGat/at																																																																															
MED12	9968	MSKCC	GRCh37	X	70339722	70339722	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059785-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			80	158	165	0	ENST00000374080.3:c.391A>G	p.Lys131Glu	p.K131E	ENST00000374080		131	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0059792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	166	534	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0059792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			923	337	766	1	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125395	47125395	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	176	552	1	ENST00000409792.3:c.5875G>T	p.Glu1959Ter	p.E1959*	ENST00000409792	NM_014159.6	1959	Gaa/Taa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942166	81942166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	187	520	0	ENST00000359376.3:c.1703C>T	p.Thr568Ile	p.T568I	ENST00000359376	NM_002661.3	568	aCc/aTc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24133997	24133997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	219	560	1	ENST00000263121.7:c.148C>T	p.Leu50Phe	p.L50F	ENST00000263121	NM_003073.3	50	Ctc/Ttc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921356	178921356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	48	383	0	ENST00000263967.3:c.838G>A	p.Gly280Arg	p.G280R	ENST00000263967	NM_006218.2	280	Ggg/Agg																																																																															
TERT	7015	MSKCC	GRCh37	5	1296054	1296054	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0059792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1062	253	719	0				ENST00000310581	NM_198253.2																																																																																	
MET	4233	MSKCC	GRCh37	7	116381062	116381065	+	frameshift_variant	Frame_Shift_Del	DEL	CTGC	CTGC	-			P-0059792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	62	471	0	ENST00000397752.3:c.1688_1691del	p.Pro563GlnfsTer18	p.P563Qfs*18	ENST00000397752	NM_000245.2	562	CTGCct/ct																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2047322	2047322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059792-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	10	100	0	ENST00000349721.2:c.884C>T	p.Ala295Val	p.A295V	ENST00000349721	NM_003070.3	295	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059809-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	225	599	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40359593	40359593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059809-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	33	338	0	ENST00000293328.3:c.2060C>T	p.Pro687Leu	p.P687L	ENST00000293328	NM_012448.3	687	cCc/cTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245407	153245407	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059809-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	205	382	1	ENST00000281708.4:c.1784T>A	p.Val595Asp	p.V595D	ENST00000281708	NM_033632.3	595	gTc/gAc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117679153	117679153	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059809-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			188	248	374	0	ENST00000368508.3:c.3668T>C	p.Val1223Ala	p.V1223A	ENST00000368508	NM_002944.2	1223	gTt/gCt																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975498	13975498	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059809-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	64	467	0	ENST00000405192.2:c.389T>A	p.Val130Glu	p.V130E	ENST00000405192	NM_001163147.1	130	gTg/gAg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254905	16254905	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs949668986		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			653	124	595	0	ENST00000375759.3:c.2170C>T	p.Arg724Ter	p.R724*	ENST00000375759	NM_015001.2	724	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101099	27101099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			726	117	641	0	ENST00000324856.7:c.4381C>T	p.Arg1461Ter	p.R1461*	ENST00000324856	NM_006015.4	1461	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			826	135	731	2	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
JUN	3725	MSKCC	GRCh37	1	59247893	59247893	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			893	126	695	0	ENST00000371222.2:c.850del	p.Val284Ter	p.V284*	ENST00000371222	NM_002228.3	284	Gtg/tg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466362	120466363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	41	672	0	ENST00000256646.2:c.4756dup	p.Glu1586GlyfsTer10	p.E1586Gfs*10	ENST00000256646	NM_024408.3	1586	gaa/gGaa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466378	120466378	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779822957		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			632	74	666	1	ENST00000256646.2:c.4741C>T	p.Arg1581Trp	p.R1581W	ENST00000256646	NM_024408.3	1581	Cgg/Tgg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150921896	150921896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			620	79	543	0	ENST00000271640.5:c.1475C>T	p.Thr492Met	p.T492M	ENST00000271640	NM_001145415.1	492	aCg/aTg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150931707	150931707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	86	549	1	ENST00000271640.5:c.2384G>A	p.Arg795Gln	p.R795Q	ENST00000271640	NM_001145415.1	795	cGg/cAg																																																																															
RIT1	6016	MSKCC	GRCh37	1	155880486	155880486	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	108	497	0	ENST00000368323.3:c.67A>G	p.Lys23Glu	p.K23E	ENST00000368323	NM_006912.5	23	Aaa/Gaa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746114	162746114	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771259035		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	73	516	0	ENST00000367921.3:c.2237G>A	p.Arg746Gln	p.R746Q	ENST00000367921	NM_006182.2	746	cGg/cAg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736238	243736238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	39	348	0	ENST00000263826.5:c.809G>A	p.Arg270His	p.R270H	ENST00000263826	NM_005465.4	270	cGt/cAt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88679173	88679174	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	26	183	0	ENST00000372037.3:c.1118dup	p.Asn373LysfsTer8	p.N373Kfs*8	ENST00000372037	NM_004329.2	371	-/A																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	68	477	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154380	2154380	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1191719522		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			629	116	738	0	ENST00000434045.2:c.548G>A	p.Arg183His	p.R183H	ENST00000434045	NM_001127598.1	183	cGc/cAc																																																																															
APLNR	187	MSKCC	GRCh37	11	57003536	57003536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	115	798	0	ENST00000606794.1:c.943C>T	p.Arg315Cys	p.R315C	ENST00000606794	NM_005161.4	315	Cgc/Tgc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64128998	64128998	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141880979		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			929	142	861	0	ENST00000334205.4:c.628C>T	p.Arg210Cys	p.R210C	ENST00000334205	NM_003942.2	210	Cgt/Tgt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64132875	64132875	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746182941		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			717	113	718	0	ENST00000334205.4:c.1009C>T	p.Arg337Trp	p.R337W	ENST00000334205	NM_003942.2	337	Cgg/Tgg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625143	69625143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	77	617	0	ENST00000334134.2:c.650C>T	p.Pro217Leu	p.P217L	ENST00000334134	NM_005247.2	217	cCg/cTg																																																																															
ATM	472	MSKCC	GRCh37	11	108236186	108236187	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	66	571	0	ENST00000278616.4:c.9126dup	p.Lys3043GlnfsTer20	p.K3043Qfs*20	ENST00000278616	NM_000051.3	3041	gac/gaCc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118353167	118353167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	40	359	0	ENST00000534358.1:c.4043C>T	p.Ala1348Val	p.A1348V	ENST00000534358	NM_005933.3	1348	gCt/gTt																																																																															
CBL	867	MSKCC	GRCh37	11	119146717	119146717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	61	501	0	ENST00000264033.4:c.880C>T	p.Arg294Trp	p.R294W	ENST00000264033	NM_005188.3	294	Cgg/Tgg																																																																															
CBL	867	MSKCC	GRCh37	11	119149355	119149356	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATG	rs1358339544		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	51	544	0	ENST00000264033.4:c.1380_1382dup	p.Asp460dup	p.D460dup	ENST00000264033	NM_005188.3	460	tat/tATGat																																																																															
CBL	867	MSKCC	GRCh37	11	119170256	119170256	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374672276		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	94	623	0	ENST00000264033.4:c.2486G>A	p.Arg829Gln	p.R829Q	ENST00000264033	NM_005188.3	829	cGg/cAg																																																																															
CCND2	894	MSKCC	GRCh37	12	4383293	4383293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			780	115	716	0	ENST00000261254.3:c.87C>A	p.Asn29Lys	p.N29K	ENST00000261254	NM_001759.3	29	aaC/aaA																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944983	31944983	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1175067252		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			820	128	809	0	ENST00000340398.3:c.118C>T	p.Arg40Cys	p.R40C	ENST00000340398	NM_001013699.2	40	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432632	49432632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			774	130	756	0	ENST00000301067.7:c.8507G>A	p.Arg2836His	p.R2836H	ENST00000301067	NM_003482.3	2836	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438061	49438061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			747	111	713	0	ENST00000301067.7:c.5110C>T	p.Arg1704Trp	p.R1704W	ENST00000301067	NM_003482.3	1704	Cgg/Tgg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481811	56481811	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767905298		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	114	583	0	ENST00000267101.3:c.739C>T	p.Arg247Trp	p.R247W	ENST00000267101	NM_001982.3	247	Cgg/Tgg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426820	121426820	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520291		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	122	625	0	ENST00000257555.6:c.511C>T	p.Arg171Ter	p.R171*	ENST00000257555		171	Cga/Tga																																																																															
LATS2	26524	MSKCC	GRCh37	13	21565492	21565492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	101	697	0	ENST00000382592.4:c.394G>A	p.Ala132Thr	p.A132T	ENST00000382592	NM_014572.2	132	Gcc/Acc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28979940	28979940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			179	32	304	0	ENST00000282397.4:c.1528G>A	p.Ala510Thr	p.A510T	ENST00000282397	NM_002019.4	510	Gca/Aca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972803	32972803	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397507261		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	30	424	0	ENST00000380152.3:c.10153C>T	p.Arg3385Cys	p.R3385C	ENST00000380152		3385	Cgt/Tgt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068881	30068881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	18	269	0	ENST00000331968.5:c.2048C>T	p.Thr683Met	p.T683M	ENST00000331968	NM_002742.2	683	aCg/aTg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422176	81422176	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758059665		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	81	637	0	ENST00000298171.2:c.152C>T	p.Pro51Leu	p.P51L	ENST00000298171	NM_000369.2	51	cCg/cTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95557422	95557422	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1426678586		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	42	374	0	ENST00000343455.3:c.5552G>A	p.Arg1851His	p.R1851H	ENST00000343455	NM_177438.2	1851	cGt/cAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42035256	42035256	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374543045		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	81	687	0	ENST00000219905.7:c.5098G>A	p.Val1700Met	p.V1700M	ENST00000219905	NM_001164273.1	1700	Gtg/Atg																																																																															
MGA	23269	MSKCC	GRCh37	15	42052603	42052603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			607	98	553	0	ENST00000219905.7:c.7274G>A	p.Arg2425His	p.R2425H	ENST00000219905	NM_001164273.1	2425	cGc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42052635	42052635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			634	100	555	0	ENST00000219905.7:c.7306C>T	p.Arg2436Cys	p.R2436C	ENST00000219905	NM_001164273.1	2436	Cgt/Tgt																																																																															
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	61	512	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																															
B2M	567	MSKCC	GRCh37	15	45007855	45007856	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	61	508	0	ENST00000558401.1:c.305_306del	p.Val102GlufsTer12	p.V102Efs*12	ENST00000558401	NM_004048.2	101	cGT/c																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628529	90628529	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1220662107		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	104	628	0	ENST00000330062.3:c.1058G>A	p.Arg353His	p.R353H	ENST00000330062	NM_002168.2	353	cGc/cAc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434581	99434581	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1461059080		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			611	217	689	0	ENST00000268035.6:c.668C>T	p.Ala223Val	p.A223V	ENST00000268035	NM_000875.3	223	gCg/gTg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396233	396234	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769619638		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			727	105	683	0	ENST00000262320.3:c.792dup	p.Gly265ArgfsTer20	p.G265Rfs*20	ENST00000262320	NM_003502.3	264	-/C																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639657	3639657	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1394177026		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			889	136	897	0	ENST00000294008.3:c.3982G>A	p.Val1328Ile	p.V1328I	ENST00000294008	NM_032444.2	1328	Gtc/Atc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639789	3639789	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373107728		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	93	747	0	ENST00000294008.3:c.3850G>A	p.Val1284Met	p.V1284M	ENST00000294008	NM_032444.2	1284	Gtg/Atg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779157	3779157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	106	682	0	ENST00000262367.5:c.5891G>A	p.Arg1964His	p.R1964H	ENST00000262367	NM_004380.2	1964	cGt/cAt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781218	3781218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			719	135	698	0	ENST00000262367.5:c.5147C>T	p.Thr1716Met	p.T1716M	ENST00000262367	NM_004380.2	1716	aCg/aTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862737	9862737	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201072838		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	64	610	0	ENST00000330684.3:c.2566C>T	p.Arg856Trp	p.R856W	ENST00000330684	NM_001134407.1	856	Cgg/Tgg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14021901	14021901	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			96	22	206	0	ENST00000311895.7:c.601A>C	p.Asn201His	p.N201H	ENST00000311895	NM_005236.2	201	Aac/Cac																																																																															
CDH1	999	MSKCC	GRCh37	16	68847301	68847301	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138135866		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	83	558	0	ENST00000261769.5:c.1223C>T	p.Ala408Val	p.A408V	ENST00000261769	NM_004360.3	408	gCg/gTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81946287	81946287	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	108	599	0	ENST00000359376.3:c.2020C>T	p.Arg674Ter	p.R674*	ENST00000359376	NM_002661.3	674	Cga/Tga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349484	89349484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs964523960		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			720	122	667	0	ENST00000301030.4:c.3466C>T	p.Arg1156Trp	p.R1156W	ENST00000301030	NM_001256183.1	1156	Cgg/Tgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29667607	29667607	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781428		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	51	431	1	ENST00000358273.4:c.7006G>A	p.Ala2336Thr	p.A2336T	ENST00000358273	NM_001042492.2	2336	Gca/Aca																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679779	33679779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	68	647	0	ENST00000394566.1:c.2302G>A	p.Glu768Lys	p.E768K	ENST00000394566	NM_001104587.1	768	Gaa/Aaa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	311	825	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760967	59760967	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	25	198	0	ENST00000259008.2:c.3440del	p.Asn1147MetfsTer3	p.N1147Mfs*3	ENST00000259008	NM_032043.2	1147	aAt/at																																																																															
STK11	6794	MSKCC	GRCh37	19	1220604	1220604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			713	131	695	0	ENST00000326873.7:c.622G>A	p.Asp208Asn	p.D208N	ENST00000326873	NM_000455.4	208	Gac/Aac																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2189740	2189740	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	105	629	0	ENST00000398665.3:c.210C>G	p.Ser70Arg	p.S70R	ENST00000398665	NM_032482.2	70	agC/agG																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101829	11101829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	94	659	0	ENST00000344626.4:c.1249C>T	p.Arg417Cys	p.R417C	ENST00000344626	NM_003072.3	417	Cgc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271747	15271747	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	120	882	0	ENST00000263388.2:c.6692del	p.Pro2231GlnfsTer15	p.P2231Qfs*15	ENST00000263388	NM_000435.2	2231	cCa/ca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299953	15299953	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1349902555		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			743	117	704	0	ENST00000263388.2:c.1225G>A	p.Val409Met	p.V409M	ENST00000263388	NM_000435.2	409	Gtg/Atg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260114	19260114	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757104393		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			705	134	664	0	ENST00000162023.5:c.179C>T	p.Thr60Met	p.T60M	ENST00000162023		60	aCg/aTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213358	36213359	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			674	97	669	0	ENST00000222270.7:c.2561_2562del	p.Glu854AlafsTer34	p.E854Afs*34	ENST00000222270	NM_014727.1	852	aAG/a																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213573	36213573	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1236115722		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	111	678	0	ENST00000222270.7:c.2675G>A	p.Arg892His	p.R892H	ENST00000222270	NM_014727.1	892	cGc/cAc																																																																															
AKT2	208	MSKCC	GRCh37	19	40771132	40771132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	57	465	0	ENST00000392038.2:c.43C>T	p.Arg15Cys	p.R15C	ENST00000392038	NM_001626.4	15	Cgt/Tgt																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			781	154	829	1	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422932	47422932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	73	603	0	ENST00000404338.3:c.1000G>A	p.Glu334Lys	p.E334K	ENST00000404338	NM_004491.4	334	Gag/Aag																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47503775	47503775	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			852	123	823	0	ENST00000404338.3:c.4335del	p.Gly1446AlafsTer353	p.G1446Afs*353	ENST00000404338	NM_004491.4	1444	Ccc/cc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905911	50905911	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199545019		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	101	732	0	ENST00000440232.2:c.883G>A	p.Val295Met	p.V295M	ENST00000440232	NM_002691.3	295	Gtg/Atg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519947		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			699	98	695	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46611698	46611698	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770192015		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	82	658	0	ENST00000263734.3:c.2512G>A	p.Glu838Lys	p.E838K	ENST00000263734	NM_001430.4	838	Gaa/Aaa																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631688	67631688	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			92	17	175	0	ENST00000272342.5:c.1874A>T	p.Asp625Val	p.D625V	ENST00000272342	NM_019002.3	625	gAc/gTc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096022	178096022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs184287392		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	91	591	0	ENST00000397062.3:c.1309C>T	p.Arg437Trp	p.R437W	ENST00000397062	NM_006164.4	437	Cgg/Tgg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225379426	225379426	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	18	177	0	ENST00000264414.4:c.442C>T	p.Arg148Ter	p.R148*	ENST00000264414	NM_003590.4	148	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022296	31022297	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			678	90	706	0	ENST00000375687.4:c.1786dup	p.Arg596ProfsTer23	p.R596Pfs*23	ENST00000375687	NM_015338.5	594	tgc/tgCc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31372649	31372649	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200902224		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	103	525	0	ENST00000328111.2:c.290G>A	p.Arg97His	p.R97H	ENST00000328111	NM_006892.3	97	cGt/cAt																																																																															
TOP1	7150	MSKCC	GRCh37	20	39728813	39728813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			549	97	500	0	ENST00000361337.2:c.1093G>A	p.Gly365Ser	p.G365S	ENST00000361337	NM_003286.2	365	Ggc/Agc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101119	41101119	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755381090		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	90	645	0	ENST00000373198.4:c.1237G>A	p.Ala413Thr	p.A413T	ENST00000373198	NM_133170.3	413	Gcg/Acg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279760	46279760	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757419594		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	61	562	0	ENST00000371998.3:c.3686G>A	p.Arg1229His	p.R1229H	ENST00000371998		1229	cGc/cAc																																																																															
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			748	95	788	1	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																																																															
NF2	4771	MSKCC	GRCh37	22	30090756	30090756	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145446060		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	60	457	0	ENST00000338641.4:c.1753G>A	p.Ala585Thr	p.A585T	ENST00000338641	NM_000268.3	585	Gcc/Acc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47127713	47127713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	81	526	0	ENST00000409792.3:c.5369G>A	p.Arg1790Gln	p.R1790Q	ENST00000409792	NM_014159.6	1790	cGg/cAg																																																																															
MST1	4485	MSKCC	GRCh37	3	49723381	49723381	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1440228604		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	112	617	0	ENST00000449682.2:c.1162G>A	p.Ala388Thr	p.A388T	ENST00000449682	NM_020998.3	388	Gca/Aca																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940127	49940127	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs553617101		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			780	122	684	0	ENST00000296474.3:c.916C>T	p.Arg306Cys	p.R306C	ENST00000296474	NM_002447.2	306	Cgc/Tgc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981237	63981237	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183231074		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			767	119	759	1	ENST00000398590.3:c.1739G>A	p.Arg580Gln	p.R580Q	ENST00000398590	NM_001177387.1	580	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749415085		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	22	288	0	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806228	1806228	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868356240		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	101	724	0	ENST00000260795.2:c.1247G>A	p.Arg416His	p.R416H	ENST00000260795		416	cGc/cAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55153609	55153609	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060501520		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	52	503	0	ENST00000257290.5:c.2575G>A	p.Val859Met	p.V859M	ENST00000257290	NM_006206.4	859	Gtg/Atg																																																																															
REST	5978	MSKCC	GRCh37	4	57777225	57777225	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	82	613	0	ENST00000309042.7:c.425del	p.Pro142LeufsTer94	p.P142Lfs*94	ENST00000309042	NM_005612.4	141	Ccc/cc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294258	1294258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	77	787	0	ENST00000310581.5:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000310581	NM_198253.2	248	cGg/cAg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950099	38950099	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757900166		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	46	631	0	ENST00000357387.3:c.3851C>T	p.Ser1284Leu	p.S1284L	ENST00000357387	NM_152756.3	1284	tCg/tTg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751937	57751937	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs552180691		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	71	507	0	ENST00000274289.3:c.1300G>A	p.Ala434Thr	p.A434T	ENST00000274289	NM_006622.3	434	Gca/Aca																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	65	196	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149505026	149505026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	103	574	0	ENST00000261799.4:c.1789C>T	p.Arg597Trp	p.R597W	ENST00000261799	NM_002609.3	597	Cgg/Tgg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637525	176637525	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	50	505	0	ENST00000439151.2:c.2125A>G	p.Thr709Ala	p.T709A	ENST00000439151	NM_022455.4	709	Aca/Gca																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553435	106553435	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs77256382		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			759	99	637	0	ENST00000369096.4:c.1400C>T	p.Pro467Leu	p.P467L	ENST00000369096	NM_001198.3	467	cCg/cTg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199967	138199967	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1430533454		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			757	114	732	0	ENST00000237289.4:c.1385C>T	p.Pro462Leu	p.P462L	ENST00000237289	NM_001270507.1	462	cCg/cTg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129060	152129060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	83	646	0	ENST00000206249.3:c.13C>A	p.Leu5Ile	p.L5I	ENST00000206249	NM_000125.3	5	Ctc/Atc																																																																															
HGF	3082	MSKCC	GRCh37	7	81374361	81374361	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1476385169		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	27	352	0	ENST00000222390.5:c.701G>A	p.Arg234His	p.R234H	ENST00000222390	NM_000601.4	234	cGc/cAc																																																																															
MET	4233	MSKCC	GRCh37	7	116415058	116415058	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	101	577	0	ENST00000397752.3:c.3152T>C	p.Val1051Ala	p.V1051A	ENST00000397752	NM_000245.2	1051	gTc/gCc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845229	151845229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			660	105	652	0	ENST00000262189.6:c.13783C>T	p.Arg4595Cys	p.R4595C	ENST00000262189	NM_170606.2	4595	Cgc/Tgc																																																																															
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	79	326	0	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																															
TCEB1	6921	MSKCC	GRCh37	8	74858992	74858992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	38	152	0	ENST00000284811.8:c.212C>T	p.Ser71Leu	p.S71L	ENST00000284811		71	tCg/tTg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141566003	141566003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	81	535	0	ENST00000220592.5:c.1261G>A	p.Gly421Arg	p.G421R	ENST00000220592	NM_012154.3	421	Ggg/Agg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739866	145739866	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755425093		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			770	259	695	0	ENST00000428558.2:c.1664C>T	p.Ser555Leu	p.S555L	ENST00000428558	NM_004260.3	555	tCg/tTg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742465	145742465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			924	109	613	0	ENST00000428558.2:c.323G>A	p.Arg108Gln	p.R108Q	ENST00000428558	NM_004260.3	108	cGg/cAg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2047456	2047456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	62	510	0	ENST00000382203.1:c.1018G>A	p.Val340Met	p.V340M	ENST00000382203		340	Gtg/Atg																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22008918	22008918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			639	90	627	0	ENST00000276925.6:c.35del	p.Gly12AlafsTer15	p.G12Afs*15	ENST00000276925	NM_004936.3	12	gGc/gc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	72	611	6	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128268597	128268597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	89	489	0	ENST00000265960.3:c.1058G>A	p.Arg353His	p.R353H	ENST00000265960	NM_001006617.1	353	cGc/cAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390765	139390765	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763785541		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			814	139	827	1	ENST00000277541.6:c.7426G>A	p.Val2476Met	p.V2476M	ENST00000277541	NM_017617.3	2476	Gtg/Atg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390944	139390945	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTG	rs762336270		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			915	114	962	0	ENST00000277541.6:c.7244_7246dup	p.Pro2415dup	p.P2415dup	ENST00000277541	NM_017617.3	2415	cag/cCACag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395174	139395174	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			749	113	825	0	ENST00000277541.6:c.5764A>G	p.Asn1922Asp	p.N1922D	ENST00000277541	NM_017617.3	1922	Aac/Gac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396919	139396919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375897519		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	89	521	1	ENST00000277541.6:c.5189C>T	p.Pro1730Leu	p.P1730L	ENST00000277541	NM_017617.3	1730	cCg/cTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399162	139399162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	89	550	0	ENST00000277541.6:c.4981C>T	p.Arg1661Trp	p.R1661W	ENST00000277541	NM_017617.3	1661	Cgg/Tgg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030576	47030576	+	intron_variant	Intron	SNP	G	G	T			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			517	100	648	1	ENST00000329236.7:c.201+1679G>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
ARAF	369	MSKCC	GRCh37	X	47426493	47426493	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1046676785		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			728	164	811	0	ENST00000377045.4:c.836G>A	p.Arg279His	p.R279H	ENST00000377045	NM_001654.4	279	cGc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70341238	70341238	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754407926		P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			617	116	733	0	ENST00000374080.3:c.797G>A	p.Arg266His	p.R266H	ENST00000374080		266	cGc/cAc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123224793	123224793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059813-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	19	386	0	ENST00000218089.9:c.3557G>A	p.Arg1186Gln	p.R1186Q	ENST00000218089	NM_001042749.1	1186	cGa/cAa																																																																															
STK19	8859	MSKCC	GRCh37	6	31948502	31948502	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201134143		P-0039314-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			328	26	238	0	ENST00000375331.2:c.973C>T	p.Arg325Trp	p.R325W	ENST00000375331	NM_004197.1	325	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039314-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			325	41	341	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NF1	4763	MSKCC	GRCh37	17	29587409	29587409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039314-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			413	38	333	0	ENST00000358273.4:c.4453G>A	p.Asp1485Asn	p.D1485N	ENST00000358273	NM_001042492.2	1485	Gat/Aat																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61310691	61310691	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039314-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			348	55	370	0	ENST00000341074.5:c.121G>C	p.Val41Leu	p.V41L	ENST00000341074	NM_002974.2	41	Gtc/Ctc																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61323000	61323000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039314-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			660	137	565	0	ENST00000283752.5:c.1064C>T	p.Ser355Leu	p.S355L	ENST00000283752	NM_006919.2	355	tCa/tTa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600476	10600477	+	missense_variant	Missense_Mutation	DNP	CT	CT	AG			P-0039314-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			727	196	610	0	ENST00000171111.5:c.1378_1379inv	p.Arg460Leu	p.R460L	ENST00000171111	NM_203500.1	460	AGg/CTg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513288	44513288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039314-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			759	152	584	0	ENST00000291552.4:c.647G>T	p.Gly216Val	p.G216V	ENST00000291552	NM_006758.2	216	gGc/gTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168618	32168618	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039314-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			720	89	520	0	ENST00000375023.3:c.4305T>A	p.His1435Gln	p.H1435Q	ENST00000375023	NM_004557.3	1435	caT/caA																																																																															
TEK	7010	MSKCC	GRCh37	9	27212734	27212734	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039314-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			492	86	511	0	ENST00000380036.4:c.2716C>A	p.Pro906Thr	p.P906T	ENST00000380036	NM_000459.3	906	Ccc/Acc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0059651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			553	155	547	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576919	7576919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			754	199	741	0	ENST00000269305.4:c.927del	p.Asn310ThrfsTer35	p.N310Tfs*35	ENST00000269305	NM_001126112.2	309	ccC/cc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028850	47028850	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0059651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	64	327	0	ENST00000329236.7:c.154G>T	p.Glu52Ter	p.E52*	ENST00000329236	NM_001204466.1	52	Gag/Tag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190615	11190615	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			709	95	699	0	ENST00000361445.4:c.5584C>G	p.Pro1862Ala	p.P1862A	ENST00000361445	NM_004958.3	1862	Cca/Gca																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46740230	46740230	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	35	531	0	ENST00000371975.4:c.1710G>T	p.Met570Ile	p.M570I	ENST00000371975	NM_003579.3	570	atG/atT																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149238774	149238774	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0059651-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			740	105	530	0	ENST00000360632.3:c.1021G>A	p.Glu341Lys	p.E341K	ENST00000360632	NM_015472.4	341	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28929495		P-0059656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	129	619	0	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298003	15298003	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752404540		P-0059656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	28	791	0	ENST00000263388.2:c.1753G>A	p.Glu585Lys	p.E585K	ENST00000263388	NM_000435.2	585	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0059656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	129	730	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133219164	133219164	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1274894982		P-0059656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	93	761	0	ENST00000320574.5:c.4880A>G	p.His1627Arg	p.H1627R	ENST00000320574	NM_006231.2	1627	cAt/cGt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56493805	56493805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	70	768	0	ENST00000267101.3:c.3121C>T	p.Pro1041Ser	p.P1041S	ENST00000267101	NM_001982.3	1041	Cca/Tca																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729558	41729558	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059656-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	22	804	0	ENST00000242208.4:c.971A>G	p.Lys324Arg	p.K324R	ENST00000242208	NM_002192.2	324	aAa/aGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0059664-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			37	13	453	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0059668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	151	584	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521481	8521481	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760428875		P-0059668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	114	429	0	ENST00000356435.5:c.757G>A	p.Val253Ile	p.V253I	ENST00000356435		253	Gtt/Att																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	172	292	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226252129	226252149	+	inframe_deletion	In_Frame_Del	DEL	CTCGCAAGAGTGCGCCCTCTA	CTCGCAAGAGTGCGCCCTCTA	-			P-0059668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			183	117	107	0	ENST00000366813.1:c.79_99del	p.Arg27_Thr33del	p.R27_T33del	ENST00000366813		26	gCTCGCAAGAGTGCGCCCTCTAct/gct																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946352	71946352	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0059668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	110	563	0	ENST00000298229.2:c.2516T>G	p.Val839Gly	p.V839G	ENST00000298229	NM_001567.3	839	gTt/gGt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56480377	56480377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	126	425	0	ENST00000267101.3:c.484G>T	p.Asp162Tyr	p.D162Y	ENST00000267101	NM_001982.3	162	Gac/Tac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440922	56441662	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAGGACAGCACTGGCTCCTCGCTCACCCGCCATCCGAGCCTGCAGAGGCACACAGTAGAGGTTGGGCTGAGGTCAGGGAAGGACAGAGCCCACCCACAGGCTAGCCTCACCCCTCACACATCTATCCCTTCCTAGGATTATGCCCACAGCACATCTTTGCACACTCACATCTACCTATGCAAGGGGTCACTGGGTCTAAGATCTCCTCTTCTGCCTCCTGAGCTCACTCAGGTCCCCACTGCCTTCAAGGGATAATATCTAGCTTTTCCTTTTGTAATGGAACAAACCCTTAAGGGGGGTTTACAGGGTGCCAGGTGGTGGACCTGGCTCTAGGATGAAAGACAAATAAGACACAGCTCCTGCCCTCAGGGTACAATCAGCCTGCCTTCACTAAGAGGTATGAGCACGAAGAGTAGGAGGGACCTGCACCCCTTAGAAGGAGAAGAGAGAGGAAGAAGGGGACAGCAGAGAAGTAGAGCTCTCCTTCAGAGGGAGCTGGGCTTTCCAGGGCCCAGTCCTGCCTGCAGGGCATCTCCCCAGCTCAGGCAAAGGTCTAAGAGCCTGGGACGCCACTCTCACGCAAGGCCACCATCACAAAGCCCCTGTCTCAGCTCATCTCATGGGCTCCCTCTCCTTGCCACACTCTACTTTGCCAAGTCTTTCTCTGGCTCCAATTCAAGGACTTAGAGGAGTCCTTGTCCAGTGGTTTATCCTTTCGTCCCCTCCCTTAGGGTGGCATT	AGAGGACAGCACTGGCTCCTCGCTCACCCGCCATCCGAGCCTGCAGAGGCACACAGTAGAGGTTGGGCTGAGGTCAGGGAAGGACAGAGCCCACCCACAGGCTAGCCTCACCCCTCACACATCTATCCCTTCCTAGGATTATGCCCACAGCACATCTTTGCACACTCACATCTACCTATGCAAGGGGTCACTGGGTCTAAGATCTCCTCTTCTGCCTCCTGAGCTCACTCAGGTCCCCACTGCCTTCAAGGGATAATATCTAGCTTTTCCTTTTGTAATGGAACAAACCCTTAAGGGGGGTTTACAGGGTGCCAGGTGGTGGACCTGGCTCTAGGATGAAAGACAAATAAGACACAGCTCCTGCCCTCAGGGTACAATCAGCCTGCCTTCACTAAGAGGTATGAGCACGAAGAGTAGGAGGGACCTGCACCCCTTAGAAGGAGAAGAGAGAGGAAGAAGGGGACAGCAGAGAAGTAGAGCTCTCCTTCAGAGGGAGCTGGGCTTTCCAGGGCCCAGTCCTGCCTGCAGGGCATCTCCCCAGCTCAGGCAAAGGTCTAAGAGCCTGGGACGCCACTCTCACGCAAGGCCACCATCACAAAGCCCCTGTCTCAGCTCATCTCATGGGCTCCCTCTCCTTGCCACACTCTACTTTGCCAAGTCTTTCTCTGGCTCCAATTCAAGGACTTAGAGGAGTCCTTGTCCAGTGGTTTATCCTTTCGTCCCCTCCCTTAGGGTGGCATT	-			P-0059668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	83	523	0	ENST00000407977.2:c.376-701_415del		p.X126_splice	ENST00000407977		126																																																																																
FLT4	2324	MSKCC	GRCh37	5	180039529	180039529	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	71	423	0	ENST00000261937.6:c.3514C>A	p.Leu1172Met	p.L1172M	ENST00000261937	NM_182925.4	1172	Ctg/Atg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93955059	93955059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	60	317	0	ENST00000369303.4:c.2839G>T	p.Ala947Ser	p.A947S	ENST00000369303	NM_004440.3	947	Gct/Tct																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44936053	44936056	+	frameshift_variant	Frame_Shift_Del	DEL	ACCT	ACCT	-			P-0059668-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	83	178	0	ENST00000377967.4:c.2816_2819del	p.Pro939HisfsTer30	p.P939Hfs*30	ENST00000377967	NM_021140.2	938	ccACCT/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0059670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	36	268	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
USP8	9101	MSKCC	GRCh37	15	50776547	50776547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	23	325	0	ENST00000433963.1:c.1879G>A	p.Glu627Lys	p.E627K	ENST00000433963	NM_001128611.1	627	Gaa/Aaa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220382	1220382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	66	553	0	ENST00000326873.7:c.475C>T	p.Gln159Ter	p.Q159*	ENST00000326873	NM_000455.4	159	Cag/Tag																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52723110	52723110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	50	489	0	ENST00000322088.6:c.1295G>T	p.Gly432Val	p.G432V	ENST00000322088	NM_014225.5	432	gGa/gTa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52613112	52613112	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0059670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	71	504	0	ENST00000394830.3:c.3416T>G	p.Val1139Gly	p.V1139G	ENST00000394830	NM_018313.4	1139	gTc/gGc																																																																															
TET2	54790	MSKCC	GRCh37	4	106156348	106156348	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059670-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	73	613	0	ENST00000380013.4:c.1249C>T	p.Gln417Ter	p.Q417*	ENST00000380013	NM_001127208.2	417	Cag/Tag																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442569	52442569	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	29	275	0	ENST00000460680.1:c.176G>C	p.Arg59Pro	p.R59P	ENST00000460680	NM_004656.3	59	cGg/cCg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125395	47125395	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	23	275	0	ENST00000409792.3:c.5875G>T	p.Glu1959Ter	p.E1959*	ENST00000409792	NM_014159.6	1959	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0059675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	19	154	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
STK11	6794	MSKCC	GRCh37	19	1222979	1222990	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCAGCTGGTTC	TGCAGCTGGTTC	-			P-0059675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	52	294	0	ENST00000326873.7:c.921-5_927del		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11129655	11129655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	17	317	0	ENST00000344626.4:c.2461G>A	p.Glu821Lys	p.E821K	ENST00000344626	NM_003072.3	821	Gag/Aag																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442074	52442074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059675-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	38	308	0	ENST00000460680.1:c.275C>T	p.Ala92Val	p.A92V	ENST00000460680	NM_004656.3	92	gCa/gTa																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748290	41748290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059678-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	68	264	0	ENST00000226382.2:c.479C>T	p.Ala160Val	p.A160V	ENST00000226382	NM_003924.3	160	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420856	49420856	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200747934		P-0059678-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	49	300	0	ENST00000301067.7:c.14893G>A	p.Ala4965Thr	p.A4965T	ENST00000301067	NM_003482.3	4965	Gcc/Acc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38982070	38982070	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059678-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	16	212	0	ENST00000357387.3:c.652T>C	p.Cys218Arg	p.C218R	ENST00000357387	NM_152756.3	218	Tgc/Cgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519995		P-0059681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	140	315	0	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc																																																																															
MED12	9968	MSKCC	GRCh37	X	70357714	70357714	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1009330609		P-0059681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	43	210	0	ENST00000374080.3:c.5965C>T	p.Arg1989Cys	p.R1989C	ENST00000374080		1989	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0059756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	378	697	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	80	454	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671760	30671760	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75355880		P-0059756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	356	572	0	ENST00000376406.3:c.5200G>A	p.Ala1734Thr	p.A1734T	ENST00000376406	NM_014641.2	1734	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112128203	112128203	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	45	318	1	ENST00000257430.4:c.706C>T	p.Gln236Ter	p.Q236*	ENST00000257430	NM_000038.5	236	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0059756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	115	301	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347216	89347216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	401	664	0	ENST00000301030.4:c.5734G>T	p.Asp1912Tyr	p.D1912Y	ENST00000301030	NM_001256183.1	1912	Gac/Tac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535367	66535367	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	17	462	0	ENST00000273854.3:c.94T>A	p.Tyr32Asn	p.Y32N	ENST00000273854	NM_004439.5	32	Tac/Aac																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372217	55372217	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	675	608	0	ENST00000297316.4:c.907C>G	p.Pro303Ala	p.P303A	ENST00000297316	NM_022454.3	303	Ccc/Gcc																																																																															
MTAP	4507	MSKCC	GRCh37	9	21816722	21816722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059756-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	18	292	0	ENST00000380172.4:c.130G>A	p.Ala44Thr	p.A44T	ENST00000380172	NM_002451.3	44	Gcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0028059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	52	314	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0028059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	50	467	0	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																																
CDH1	999	MSKCC	GRCh37	16	68857460	68857460	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121964874		P-0028059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	118	446	0	ENST00000261769.5:c.2095C>T	p.Gln699Ter	p.Q699*	ENST00000261769	NM_004360.3	699	Cag/Tag																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230561434	230561435	+	5_prime_UTR_variant	5'UTR	INS	-	-	CGGGGCG			P-0028059-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	71	916	0	ENST00000391860.1:c.-112_-106dup		p.*38*	ENST00000391860	NM_001258311.1																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs878854073		P-0058093-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			599	37	554	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0058763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	158	594	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0058763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			72	13	200	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287964	33287964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	188	591	0	ENST00000374542.5:c.1289C>T	p.Ala430Val	p.A430V	ENST00000374542	NM_001141970.1	430	gCc/gTc																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150923439	150923439	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	79	457	0	ENST00000271640.5:c.2086G>C	p.Glu696Gln	p.E696Q	ENST00000271640	NM_001145415.1	696	Gag/Cag																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150923523	150923523	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			500	70	482	0	ENST00000271640.5:c.2170G>C	p.Glu724Gln	p.E724Q	ENST00000271640	NM_001145415.1	724	Gaa/Caa																																																																															
TET1	80312	MSKCC	GRCh37	10	70442602	70442602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	103	391	0	ENST00000373644.4:c.4924G>A	p.Glu1642Lys	p.E1642K	ENST00000373644	NM_030625.2	1642	Gaa/Aaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624289	89624289	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	84	304	0	ENST00000371953.3:c.63C>G	p.Phe21Leu	p.F21L	ENST00000371953	NM_000314.4	21	ttC/ttG																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992468	72992469	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0058763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	145	550	0	ENST00000268489.5:c.1576_1577del	p.Ser526LysfsTer6	p.S526Kfs*6	ENST00000268489	NM_006885.3	526	TCa/a																																																																															
MALT1	10892	MSKCC	GRCh37	18	56402546	56402546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	31	250	0	ENST00000348428.3:c.1588G>A	p.Asp530Asn	p.D530N	ENST00000348428	NM_006785.3	530	Gat/Aat																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123499631	123499631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058763-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	10	248	0	ENST00000371139.4:c.158C>A	p.Thr53Lys	p.T53K	ENST00000371139	NM_001114937.2	53	aCa/aAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574026	7574026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			469	148	458	0	ENST00000269305.4:c.1001G>T	p.Gly334Val	p.G334V	ENST00000269305	NM_001126112.2	334	gGg/gTg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162749994	162749994	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			777	186	557	0	ENST00000367921.3:c.2526C>G	p.Phe842Leu	p.F842L	ENST00000367921	NM_006182.2	842	ttC/ttG																																																																															
NBN	4683	MSKCC	GRCh37	8	90992961	90992961	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs780470185		P-0058792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			137	18	333	0	ENST00000265433.3:c.480+1G>A		p.X160_splice	ENST00000265433	NM_002485.4	160																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36218440	36218440	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			564	321	527	0	ENST00000222270.7:c.4219G>T	p.Gly1407Trp	p.G1407W	ENST00000222270	NM_014727.1	1407	Ggg/Tgg																																																																															
CYP19A1	1588	MSKCC	GRCh37	15	51507372	51507372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			264	26	509	0	ENST00000396402.1:c.916G>T	p.Ala306Ser	p.A306S	ENST00000396402	NM_000103.3	306	Gca/Tca																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727513	88727513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			677	67	585	0	ENST00000360948.2:c.266G>T	p.Arg89Leu	p.R89L	ENST00000360948	NM_001012338.2	89	cGc/cTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29592312	29592312	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			102	33	360	0	ENST00000358273.4:c.4790G>T	p.Gly1597Val	p.G1597V	ENST00000358273	NM_001042492.2	1597	gGg/gTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119818	70119818	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			554	222	592	0	ENST00000245479.2:c.820G>C	p.Asp274His	p.D274H	ENST00000245479	NM_000346.3	274	Gac/Cac																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39637933	39637933	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			431	44	488	0	ENST00000262039.4:c.2350G>T	p.Val784Leu	p.V784L	ENST00000262039	NM_002647.2	784	Gta/Tta																																																																															
SERPINB3	6317	MSKCC	GRCh37	18	61322997	61322998	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0058792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			495	78	634	0	ENST00000283752.5:c.1066_1067delinsAT	p.Pro356Ile	p.P356I	ENST00000283752	NM_006919.2	356	CCt/ATt																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308443	30308443	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			440	222	570	0	ENST00000262643.3:c.457A>G	p.Met153Val	p.M153V	ENST00000262643	NM_001238.2	153	Atg/Gtg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39262405	39262405	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			178	15	475	0	ENST00000402219.2:c.1022G>T	p.Arg341Met	p.R341M	ENST00000402219	NM_005633.3	341	aGg/aTg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99160385	99160385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			951	149	564	0	ENST00000074304.5:c.864G>T	p.Glu288Asp	p.E288D	ENST00000074304	NM_001134224.1	288	gaG/gaT																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670633	134670633	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769719088		P-0058792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			547	103	568	0	ENST00000398015.3:c.544G>A	p.Ala182Thr	p.A182T	ENST00000398015	NM_004441.4	182	Gcc/Acc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138456725	138456725	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			148	17	381	0	ENST00000289153.2:c.625G>T	p.Val209Leu	p.V209L	ENST00000289153	NM_006219.2	209	Gtg/Ttg																																																																															
ATR	545	MSKCC	GRCh37	3	142188388	142188388	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			157	21	504	0	ENST00000350721.4:c.6343A>T	p.Met2115Leu	p.M2115L	ENST00000350721	NM_001184.3	2115	Atg/Ttg																																																																															
E2F3	1871	MSKCC	GRCh37	6	20481648	20481648	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			508	98	538	0	ENST00000346618.3:c.718del	p.Gln240AsnfsTer24	p.Q240Nfs*24	ENST00000346618	NM_001949.4	239	gtC/gt																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250497	26250497	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1139	146	764	0	ENST00000446824.2:c.337A>T	p.Ile113Phe	p.I113F	ENST00000446824	NM_021018.2	113	Atc/Ttc																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271518	26271518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1030	90	763	0	ENST00000305910.3:c.95C>A	p.Ala32Asp	p.A32D	ENST00000305910	NM_003534.2	32	gCc/gAc																																																																															
STK19	8859	MSKCC	GRCh37	6	31939837	31939837	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs202228977		P-0058792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			894	233	628	0	ENST00000375331.2:c.64T>C	p.Ser22Pro	p.S22P	ENST00000375331	NM_004197.1	22	Tcc/Ccc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223596	53223604	+	inframe_deletion	In_Frame_Del	DEL	GGCGCGGGC	GGCGCGGGC	-			P-0058792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			730	52	632	0	ENST00000375401.3:c.3755_3763del	p.Arg1252_Arg1254del	p.R1252_R1254del	ENST00000375401	NM_004187.3	1252	cGCCCGCGCCtg/ctg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53241088	53241088	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0058792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			574	170	522	0	ENST00000375401.3:c.1123G>T	p.Glu375Ter	p.E375*	ENST00000375401	NM_004187.3	375	Gag/Tag																																																																															
MED12	9968	MSKCC	GRCh37	X	70350064	70350064	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0058792-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			700	64	484	0	ENST00000374080.3:c.4047G>T	p.Gln1349His	p.Q1349H	ENST00000374080		1349	caG/caT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0059018-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			231	71	312	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912580		P-0059240-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			253	101	409	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485824	8485824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs547908736		P-0059240-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			662	179	402	0	ENST00000356435.5:c.2993C>T	p.Thr998Met	p.T998M	ENST00000356435		998	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059240-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			373	219	305	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578374	7578416	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAAC	CGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAAC	-			P-0059240-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			387	297	661	0	ENST00000269305.4:c.514_556del	p.Val172MetfsTer61	p.V172Mfs*61	ENST00000269305	NM_001126112.2	172	GTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGat/at																																																																															
TBX3	6926	MSKCC	GRCh37	12	115111972	115111972	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0059465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			193	243	513	0	ENST00000257566.3:c.1768C>T	p.Gln590Ter	p.Q590*	ENST00000257566	NM_016569.3	590	Cag/Tag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69005888	69005888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			400	117	377	0	ENST00000288368.4:c.2299G>A	p.Asp767Asn	p.D767N	ENST00000288368	NM_024870.2	767	Gac/Aac																																																																															
MEN1	4221	MSKCC	GRCh37	11	64571996	64571996	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			117	236	535	0	ENST00000337652.1:c.1658del	p.Gly553ValfsTer11	p.G553Vfs*11	ENST00000337652	NM_130803.2	553	gGt/gt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984753	11984754	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0059465-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			32	102	246	0	ENST00000353533.5:c.301dup	p.Asp101GlyfsTer31	p.D101Gfs*31	ENST00000353533	NM_003010.3	100	gag/gaGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0059526-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			179	485	556	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0059526-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			208	204	491	1	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
APC	324	MSKCC	GRCh37	5	112102972	112102973	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0059526-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			191	207	480	0	ENST00000257430.4:c.308dup	p.Ser104IlefsTer35	p.S104Ifs*35	ENST00000257430	NM_000038.5	103	gta/gTta																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242442	55242443	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTAAAATTCCCGTCGCTA			P-0059526-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			533	340	392	0	ENST00000275493.2:c.2214_2231dup	p.Ile740_Lys745dup	p.I740_K745dup	ENST00000275493	NM_005228.3	740	gtt/gTTAAAATTCCCGTCGCTAtt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63531746	63531746	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0059526-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			809	74	447	0	ENST00000307078.5:c.2235A>C	p.Glu745Asp	p.E745D	ENST00000307078	NM_004655.3	745	gaA/gaC																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213917	66213917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059526-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			533	162	343	0	ENST00000273854.3:c.2513G>T	p.Gly838Val	p.G838V	ENST00000273854	NM_004439.5	838	gGa/gTa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149511557	149511557	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0059526-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			398	208	553	0	ENST00000261799.4:c.1228C>T	p.Gln410Ter	p.Q410*	ENST00000261799	NM_002609.3	410	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0059628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	132	355	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858337	9858337	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs560057284		P-0059628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			615	136	429	0	ENST00000330684.3:c.3064C>T	p.Arg1022Cys	p.R1022C	ENST00000330684	NM_001134407.1	1022	Cgc/Tgc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241894	72241894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	42	292	0	ENST00000357731.5:c.496C>A	p.Pro166Thr	p.P166T	ENST00000357731	NM_173808.2	166	Cca/Aca																																																																															
ETV6	2120	MSKCC	GRCh37	12	11992239	11992239	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0059628-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	95	300	0	ENST00000396373.4:c.328+1G>T		p.X110_splice	ENST00000396373	NM_001987.4	110																																																																																
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0059645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	85	504	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0059645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	37	174	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0059645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	83	516	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0059645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	77	408	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604655	48604655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	75	520	0	ENST00000342988.3:c.1477G>A	p.Asp493Asn	p.D493N	ENST00000342988	NM_005359.5	493	Gat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	53	314	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251882	153251882	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0059645-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	60	279	0	ENST00000281708.4:c.1122+2T>C		p.X374_splice	ENST00000281708	NM_033632.3	374																																																																																
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0059646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	108	570	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059646-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	39	311	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0059719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	189	632	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
PPARG	5468	MSKCC	GRCh37	3	12393124	12393125	+	missense_variant	Missense_Mutation	DNP	CC	CC	GG			P-0059719-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	61	365	0	ENST00000287820.6:c.33_34inv	p.Asp11_Pro12delinsGluAla	p.D11_P12delinsEA	ENST00000287820	NM_015869.4	11	gaCCca/gaGGca																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0059747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	356	457	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354348	354348	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	110	459	0	ENST00000262320.3:c.1210G>T	p.Glu404Ter	p.E404*	ENST00000262320	NM_003502.3	404	Gag/Tag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347981	347982	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0059747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	60	759	0	ENST00000262320.3:c.1524dup	p.Ala509CysfsTer82	p.A509Cfs*82	ENST00000262320	NM_003502.3	508	-/T																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67631007	67631007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059747-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			949	210	539	0	ENST00000272342.5:c.1193A>G	p.Asp398Gly	p.D398G	ENST00000272342	NM_019002.3	398	gAc/gGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0059750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	8	461	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573142	64573142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059750-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	329	527	0	ENST00000337652.1:c.1165G>T	p.Glu389Ter	p.E389*	ENST00000337652	NM_130803.2	389	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952006	178952006	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	228	536	0	ENST00000263967.3:c.3061T>C	p.Tyr1021His	p.Y1021H	ENST00000263967	NM_006218.2	1021	Tac/Cac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0059754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	127	219	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061267	38061267	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	258	700	0	ENST00000250448.2:c.722G>C	p.Gly241Ala	p.G241A	ENST00000250448	NM_004496.3	241	gGc/gCc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16263719	16263720	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAG			P-0059754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	138	741	0	ENST00000375759.3:c.10091_10094dup	p.Pro3367CysfsTer49	p.P3367Cfs*49	ENST00000375759	NM_015001.2	3363	gcc/gcCCAGc																																																																															
FH	2271	MSKCC	GRCh37	1	241665858	241665858	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059754-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			906	100	445	0	ENST00000366560.3:c.1121C>G	p.Pro374Arg	p.P374R	ENST00000366560	NM_000143.3	374	cCt/cGt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468308	50468308	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1270036178		P-0059755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	49	559	0	ENST00000331340.3:c.1543C>T	p.Arg515Cys	p.R515C	ENST00000331340	NM_006060.4	515	Cgc/Tgc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374175	118374175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	129	705	0	ENST00000534358.1:c.7568T>C	p.Val2523Ala	p.V2523A	ENST00000534358	NM_005933.3	2523	gTc/gCc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856640	111856640	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059755-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	67	547	0	ENST00000341259.2:c.691G>T	p.Asp231Tyr	p.D231Y	ENST00000341259	NM_005475.2	231	Gat/Tat																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			349	124	444	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			91	200	308	0	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			339	169	507	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			277	110	408	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17743002	17743002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			328	21	490	1	ENST00000250003.3:c.910G>A	p.Ala304Thr	p.A304T	ENST00000250003	NM_002478.4	304	Gcc/Acc																																																																															
FH	2271	MSKCC	GRCh37	1	241680541	241680541	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782207		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			161	100	292	0	ENST00000366560.3:c.208G>A	p.Ala70Thr	p.A70T	ENST00000366560	NM_000143.3	70	Gcc/Acc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654642	67654642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			276	129	355	0	ENST00000264010.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000264010	NM_006565.3	377	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			241	177	420	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			306	118	421	9	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87563482	87563482	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1194954580		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			275	158	434	0	ENST00000277120.3:c.1870G>A	p.Val624Met	p.V624M	ENST00000277120		624	Gtg/Atg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			292	179	478	9	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			223	116	356	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			221	107	303	0	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046958	128046958	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs772883177		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			374	66	395	6	ENST00000285398.2:c.777A>T	p.Glu259Asp	p.E259D	ENST00000285398	NM_000122.1	259	gaA/gaT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535336	66535336	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1349494063		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			304	36	468	0	ENST00000273854.3:c.125C>T	p.Thr42Met	p.T42M	ENST00000273854	NM_004439.5	42	aCg/aTg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46252810	46252810	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751452957		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			179	116	278	0	ENST00000371998.3:c.239G>A	p.Arg80His	p.R80H	ENST00000371998		80	cGt/cAt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78914338	78914338	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1484629953		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	170	386	0	ENST00000306801.3:c.2962C>T	p.Arg988Trp	p.R988W	ENST00000306801	NM_020761.2	988	Cgg/Tgg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909464	50909464	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199576140		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			308	155	473	1	ENST00000440232.2:c.1268G>A	p.Arg423His	p.R423H	ENST00000440232	NM_002691.3	423	cGt/cAt																																																																															
NUP93	9688	MSKCC	GRCh37	16	56792470	56792470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	132	394	0	ENST00000308159.5:c.200G>A	p.Arg67Gln	p.R67Q	ENST00000308159	NM_014669.4	67	cGg/cAg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426795	212426795	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			304	45	396	0	ENST00000342788.4:c.2320A>C	p.Ser774Arg	p.S774R	ENST00000342788	NM_005235.2	774	Agt/Cgt																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			322	135	422	3	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																															
PPARG	5468	MSKCC	GRCh37	3	12475550	12475550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1479145908		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			282	150	436	0	ENST00000287820.6:c.1424C>T	p.Thr475Met	p.T475M	ENST00000287820	NM_015869.4	475	aCg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49418670	49418670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs587783698		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			318	148	415	0	ENST00000301067.7:c.15844C>T	p.Arg5282Ter	p.R5282*	ENST00000301067	NM_003482.3	5282	Cga/Tga																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562577	21562577	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1395329857		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			204	118	400	2	ENST00000382592.4:c.1342C>T	p.Arg448Cys	p.R448C	ENST00000382592	NM_014572.2	448	Cgt/Tgt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211898	36211899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775294431		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			349	135	511	0	ENST00000222270.7:c.1656dup	p.Lys553GlnfsTer46	p.K553Qfs*46	ENST00000222270	NM_014727.1	550	gac/gaCc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434732	49434732	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767236217		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			325	198	582	0	ENST00000301067.7:c.6821C>T	p.Ser2274Leu	p.S2274L	ENST00000301067	NM_003482.3	2274	tCg/tTg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137309141	137309141	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767968089		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			315	135	492	0	ENST00000481739.1:c.748G>A	p.Val250Met	p.V250M	ENST00000481739	NM_002957.4	250	Gtg/Atg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919936	50919936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763747258		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			230	132	489	0	ENST00000440232.2:c.3023G>A	p.Arg1008His	p.R1008H	ENST00000440232	NM_002691.3	1008	cGc/cAc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273793	18273793	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs886041591		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			341	157	439	0	ENST00000222254.8:c.1126A>G	p.Lys376Glu	p.K376E	ENST00000222254	NM_005027.3	376	Aag/Gag																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605204	46605204	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1459319402		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			213	125	372	5	ENST00000263734.3:c.1421G>C	p.Ser474Thr	p.S474T	ENST00000263734	NM_001430.4	474	aGc/aCc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281281	15281281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776163983		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	165	581	0	ENST00000263388.2:c.4975G>A	p.Val1659Ile	p.V1659I	ENST00000263388	NM_000435.2	1659	Gtc/Atc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459840	149459840	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761316359		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			379	55	480	0	ENST00000286301.3:c.367G>A	p.Ala123Thr	p.A123T	ENST00000286301	NM_005211.3	123	Gca/Aca																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944244	81944244	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769887285		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	100	401	0	ENST00000359376.3:c.1853G>A	p.Arg618His	p.R618H	ENST00000359376	NM_002661.3	618	cGc/cAc																																																																															
AR	367	MSKCC	GRCh37	X	66931429	66931429	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs978916227		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			299	132	497	0	ENST00000374690.3:c.2071G>A	p.Asp691Asn	p.D691N	ENST00000374690	NM_000044.3	691	Gac/Aac																																																																															
SOS1	6654	MSKCC	GRCh37	2	39278406	39278406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775052125		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			158	90	246	0	ENST00000402219.2:c.743G>A	p.Arg248His	p.R248H	ENST00000402219	NM_005633.3	248	cGc/cAc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610143	81610143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	35	506	1	ENST00000298171.2:c.1741G>A	p.Ala581Thr	p.A581T	ENST00000298171	NM_000369.2	581	Gca/Aca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105977	27105977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			333	162	498	1	ENST00000324856.7:c.5588C>T	p.Thr1863Ile	p.T1863I	ENST00000324856	NM_006015.4	1863	aCa/aTa																																																																															
SYK	6850	MSKCC	GRCh37	9	93606403	93606403	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs570398843		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			286	128	521	0	ENST00000375746.1:c.223G>A	p.Ala75Thr	p.A75T	ENST00000375746	NM_001174167.1	75	Gcc/Acc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291542	15291542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	61	436	0	ENST00000263388.2:c.3092G>A	p.Arg1031His	p.R1031H	ENST00000263388	NM_000435.2	1031	cGc/cAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151864451	151864451	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs535118581		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			217	104	315	0	ENST00000262189.6:c.9530G>A	p.Arg3177His	p.R3177H	ENST00000262189	NM_170606.2	3177	cGt/cAt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188944	11188944	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	157	382	0	ENST00000361445.4:c.5779del	p.Val1927Ter	p.V1927*	ENST00000361445	NM_004958.3	1927	Gtg/tg																																																																															
SDHB	6390	MSKCC	GRCh37	1	17354279	17354279	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			252	134	352	0	ENST00000375499.3:c.505C>T	p.Gln169Ter	p.Q169*	ENST00000375499	NM_003000.2	169	Cag/Tag																																																																															
SESN2	83667	MSKCC	GRCh37	1	28600631	28600631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	142	390	0	ENST00000253063.3:c.982C>T	p.Arg328Trp	p.R328W	ENST00000253063	NM_031459.4	328	Cgg/Tgg																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46532600	46532600	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			247	137	335	0	ENST00000262741.5:c.478G>C	p.Val160Leu	p.V160L	ENST00000262741	NM_003629.3	160	Gtg/Ctg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63661988	63661988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			413	29	434	0	ENST00000279873.7:c.92G>A	p.Gly31Asp	p.G31D	ENST00000279873	NM_032199.2	31	gGc/gAc																																																																															
TET1	80312	MSKCC	GRCh37	10	70432744	70432744	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	39	393	0	ENST00000373644.4:c.4766A>C	p.Lys1589Thr	p.K1589T	ENST00000373644	NM_030625.2	1589	aAg/aCg																																																																															
WT1	7490	MSKCC	GRCh37	11	32456680	32456680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			209	116	454	0	ENST00000332351.3:c.212C>A	p.Ser71Tyr	p.S71Y	ENST00000332351	NM_024426.4	71	tCc/tAc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575506	64575506	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143329068		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			298	159	539	0	ENST00000337652.1:c.526C>T	p.Arg176Trp	p.R176W	ENST00000337652	NM_130803.2	176	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108202236	108202236	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			160	74	322	0	ENST00000278616.4:c.7581G>T	p.Met2527Ile	p.M2527I	ENST00000278616	NM_000051.3	2527	atG/atT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913527		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			175	81	296	0	ENST00000256078.4:c.436G>C	p.Ala146Pro	p.A146P	ENST00000256078	NM_033360.2	146	Gca/Cca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398212	25398212	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			180	19	226	0	ENST00000256078.4:c.107T>C	p.Ile36Thr	p.I36T	ENST00000256078	NM_033360.2	36	aTa/aCa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779346	3779346	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			351	72	494	0	ENST00000262367.5:c.5702A>G	p.Gln1901Arg	p.Q1901R	ENST00000262367	NM_004380.2	1901	cAg/cGg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646255	23646255	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			319	131	419	0	ENST00000261584.4:c.1612A>T	p.Ile538Phe	p.I538F	ENST00000261584	NM_024675.3	538	Att/Ttt																																																																															
CDH1	999	MSKCC	GRCh37	16	68857439	68857439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			259	138	355	0	ENST00000261769.5:c.2074G>A	p.Ala692Thr	p.A692T	ENST00000261769	NM_004360.3	692	Gct/Act																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81946282	81946282	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1468421212		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			280	140	416	0	ENST00000359376.3:c.2015G>A	p.Arg672Gln	p.R672Q	ENST00000359376	NM_002661.3	672	cGg/cAg																																																																															
NF1	4763	MSKCC	GRCh37	17	29560080	29560080	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			415	62	413	1	ENST00000358273.4:c.3557T>A	p.Ile1186Asn	p.I1186N	ENST00000358273	NM_001042492.2	1186	aTc/aAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29654658	29654658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	25	409	0	ENST00000358273.4:c.5410G>A	p.Ala1804Thr	p.A1804T	ENST00000358273	NM_001042492.2	1804	Gca/Aca																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10246844	10246844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			252	153	493	0	ENST00000340748.4:c.4561G>A	p.Gly1521Ser	p.G1521S	ENST00000340748		1521	Ggc/Agc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15297982	15297982	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764148985		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			275	127	483	0	ENST00000263388.2:c.1774C>T	p.Arg592Cys	p.R592C	ENST00000263388	NM_000435.2	592	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213298	36213298	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			362	62	439	0	ENST00000222270.7:c.2495C>A	p.Ala832Asp	p.A832D	ENST00000222270	NM_014727.1	832	gCt/gAt																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868196	45868196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	149	480	0	ENST00000391945.4:c.494G>A	p.Gly165Glu	p.G165E	ENST00000391945	NM_000400.3	165	gGg/gAg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470005	25470005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			267	153	408	0	ENST00000264709.3:c.1037C>T	p.Pro346Leu	p.P346L	ENST00000264709	NM_175629.2	346	cCg/cTg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033892	48034183	+	splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant	Splice_Site	DEL	TTTTTTTTTTTTTTTTTAATTTTAAGGGAAGTTTGCCTGGCTAGTGAAAGGTCAACTGTAGATGCTGAAGCTGTCCATAAATTGCTGACTTTGATTAAGGAATTATAGACTGACTACATTGGAAGCTTTGAGTTGACTTCTGACAAAGGTGGTAAATTCAGACAACATTATGATCTAATAAACTTTATTTTTTAAAAATGACCATTTTTCCATTTTCTTTCTAGGAAATTAAACCCTTTTAATTCTTATCTACCTTCTACATAATGGTTATTGAATACTCCACAATATATTA	TTTTTTTTTTTTTTTTTAATTTTAAGGGAAGTTTGCCTGGCTAGTGAAAGGTCAACTGTAGATGCTGAAGCTGTCCATAAATTGCTGACTTTGATTAAGGAATTATAGACTGACTACATTGGAAGCTTTGAGTTGACTTCTGACAAAGGTGGTAAATTCAGACAACATTATGATCTAATAAACTTTATTTTTTAAAAATGACCATTTTTCCATTTTCTTTCTAGGAAATTAAACCCTTTTAATTCTTATCTACCTTCTACATAATGGTTATTGAATACTCCACAATATATTA	-			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			145	66	246	14	ENST00000234420.5:c.4002-26_*184del		p.X1334_splice	ENST00000234420	NM_000179.2	1334																																																																																
XPO1	7514	MSKCC	GRCh37	2	61720185	61720185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			189	95	269	0	ENST00000401558.2:c.1249C>T	p.Arg417Cys	p.R417C	ENST00000401558	NM_003400.3	417	Cgt/Tgt																																																																															
CASP8	841	MSKCC	GRCh37	2	202131212	202131212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			330	40	380	0	ENST00000358485.4:c.180G>A	p.Met60Ile	p.M60I	ENST00000358485	NM_001080125.1	60	atG/atA																																																																															
BARD1	580	MSKCC	GRCh37	2	215674148	215674148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	33	362	0	ENST00000260947.4:c.146G>A	p.Arg49His	p.R49H	ENST00000260947	NM_000465.2	49	cGc/cAc																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21344726	21344726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			405	48	431	0	ENST00000215739.8:c.703G>A	p.Val235Met	p.V235M	ENST00000215739	NM_006767.3	235	Gtg/Atg																																																																															
RAC2	5880	MSKCC	GRCh37	22	37622768	37622768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			243	152	408	0	ENST00000249071.6:c.524C>T	p.Ala175Val	p.A175V	ENST00000249071	NM_002872.4	175	gCc/gTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187516911	187516911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			232	130	367	0	ENST00000441802.2:c.13070G>A	p.Ser4357Asn	p.S4357N	ENST00000441802	NM_005245.3	4357	aGt/aAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295650	1295650	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			258	174	587	0				ENST00000310581	NM_198253.2																																																																																	
PIK3R1	5295	MSKCC	GRCh37	5	67576754	67576754	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			158	81	308	0	ENST00000274335.5:c.837-1G>A		p.X279_splice	ENST00000274335		279																																																																																
PDGFRB	5159	MSKCC	GRCh37	5	149502605	149502605	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			264	166	426	0	ENST00000261799.4:c.2183G>T	p.Ser728Ile	p.S728I	ENST00000261799	NM_002609.3	728	aGc/aTc																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26021080	26021080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			473	107	569	0	ENST00000357647.3:c.363G>A	p.Met121Ile	p.M121I	ENST00000357647	NM_003529.2	121	atG/atA																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911120	29911120	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			289	152	432	0	ENST00000376809.5:c.419A>C	p.Asp140Ala	p.D140A	ENST00000376809	NM_002116.7	140	gAc/gCc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818276	32818276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			367	54	373	0	ENST00000354258.4:c.1249C>T	p.Arg417Trp	p.R417W	ENST00000354258	NM_000593.5	417	Cgg/Tgg																																																																															
HGF	3082	MSKCC	GRCh37	7	81334706	81334706	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			194	101	323	0	ENST00000222390.5:c.2010G>T	p.Glu670Asp	p.E670D	ENST00000222390	NM_000601.4	670	gaG/gaT																																																																															
PAX5	5079	MSKCC	GRCh37	9	37002686	37002686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			242	173	499	0	ENST00000358127.4:c.563C>T	p.Thr188Met	p.T188M	ENST00000358127	NM_001280556.1	188	aCg/aTg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139563073	139563073	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			330	69	488	0	ENST00000308874.7:c.145T>C	p.Tyr49His	p.Y49H	ENST00000308874		49	Tac/Cac																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1331520	1331520	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773172070		P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			246	100	342	0	ENST00000381566.1:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000381566		3	cGg/cAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039284	47039284	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			401	43	471	0	ENST00000329236.7:c.676A>C	p.Ile226Leu	p.I226L	ENST00000329236	NM_001204466.1	226	Att/Ctt																																																																															
MED12	9968	MSKCC	GRCh37	X	70342717	70342717	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			220	132	368	0	ENST00000374080.3:c.1478G>T	p.Gly493Val	p.G493V	ENST00000374080		493	gGg/gTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70349988	70349988	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006863-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	178	474	0	ENST00000374080.3:c.3971T>G	p.Ile1324Ser	p.I1324S	ENST00000374080		1324	aTt/aGt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610608	52610609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	53	425	0	ENST00000394830.3:c.3564dup	p.Glu1189ArgfsTer6	p.E1189Rfs*6	ENST00000394830	NM_018313.4	1188	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7578213	7578213	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs864309495		P-0041452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	73	684	0	ENST00000269305.4:c.636del	p.Arg213AspfsTer34	p.R213Dfs*34	ENST00000269305	NM_001126112.2	212	ttT/tt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48586250	48586250	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	46	373	0	ENST00000342988.3:c.919G>T	p.Glu307Ter	p.E307*	ENST00000342988	NM_005359.5	307	Gag/Tag																																																																															
MED12	9968	MSKCC	GRCh37	X	70351422	70351422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			73	61	310	0	ENST00000374080.3:c.4070G>A	p.Arg1357His	p.R1357H	ENST00000374080		1357	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0041452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			168	46	352	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131924506	131924506	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	67	385	0	ENST00000265335.6:c.1179T>G	p.Ile393Met	p.I393M	ENST00000265335		393	atT/atG																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413956	139413956	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041452-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	75	535	0	ENST00000277541.6:c.804C>G	p.Asn268Lys	p.N268K	ENST00000277541	NM_017617.3	268	aaC/aaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0056928-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			153	102	418	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18274051	18274082	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCATTCCGCCACGTATCTCCAGGACCAGATTG	TCATTCCGCCACGTATCTCCAGGACCAGATTG	C			P-0056928-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			407	100	568	0	ENST00000222254.8:c.1291-22_1300delinsC		p.X431_splice	ENST00000222254	NM_005027.3	431																																																																																
JAK3	3718	MSKCC	GRCh37	19	17948818	17948818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058291-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			770	105	654	0	ENST00000458235.1:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000458235	NM_000215.3	542	Gag/Aag																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891277	101891277	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058291-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	95	444	0	ENST00000374994.4:c.238C>T	p.Arg80Ter	p.R80*	ENST00000374994	NM_004612.2	80	Cga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259730	16259730	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764509266		P-0058291-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			584	129	740	0	ENST00000375759.3:c.6995G>A	p.Arg2332His	p.R2332H	ENST00000375759	NM_015001.2	2332	cGc/cAc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88726698	88726698	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375475747		P-0058291-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			544	98	468	0	ENST00000360948.2:c.346C>T	p.Arg116Trp	p.R116W	ENST00000360948	NM_001012338.2	116	Cgg/Tgg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986832	36986832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058291-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			484	74	644	0	ENST00000354822.5:c.857G>A	p.Arg286Gln	p.R286Q	ENST00000354822	NM_001079668.2	286	cGa/cAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29679291	29679291	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058291-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			451	95	435	0	ENST00000358273.4:c.7474C>T	p.Gln2492Ter	p.Q2492*	ENST00000358273	NM_001042492.2	2492	Cag/Tag																																																																															
RAB35	11021	MSKCC	GRCh37	12	120541681	120541685	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTT	AGCTT	-			P-0058291-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			648	124	760	0	ENST00000229340.5:c.172_176del	p.Lys58AlafsTer52	p.K58Afs*52	ENST00000229340	NM_006861.6	58	AAGCTg/g																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59770827	59770827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058291-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			317	45	407	0	ENST00000259008.2:c.2539G>A	p.Asp847Asn	p.D847N	ENST00000259008	NM_032043.2	847	Gat/Aat																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379701	17379701	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058291-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			690	99	669	0	ENST00000359435.4:c.86C>G	p.Ser29Cys	p.S29C	ENST00000359435	NM_001033549.1	29	tCc/tGc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61715381	61715381	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058291-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			350	49	328	0	ENST00000401558.2:c.2232G>T	p.Leu744Phe	p.L744F	ENST00000401558	NM_003400.3	744	ttG/ttT																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098998	178099045	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCTATGTTTAAGACAAAAAAAGGAAGGAGAGAGCTCATGTTTTTTAA	TCCTATGTTTAAGACAAAAAAAGGAAGGAGAGAGCTCATGTTTTTTAA	-			P-0058291-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			491	54	393	0	ENST00000397062.3:c.46-46_47del		p.X16_splice	ENST00000397062	NM_006164.4	16																																																																																
MITF	4286	MSKCC	GRCh37	3	69987055	69987055	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058291-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			509	179	605	0	ENST00000352241.4:c.437C>G	p.Thr146Ser	p.T146S	ENST00000352241	NM_198159.2	146	aCt/aGt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71102901	71102901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058291-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			532	166	533	0	ENST00000318789.4:c.306G>A	p.Met102Ile	p.M102I	ENST00000318789	NM_032682.5	102	atG/atA																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149509410	149509410	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058291-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			535	92	701	0	ENST00000261799.4:c.1489C>G	p.Leu497Val	p.L497V	ENST00000261799	NM_002609.3	497	Ctg/Gtg																																																																															
MET	4233	MSKCC	GRCh37	7	116419003	116419003	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058291-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			422	73	421	0	ENST00000397752.3:c.3514G>T	p.Glu1172Ter	p.E1172*	ENST00000397752	NM_000245.2	1172	Gag/Tag																																																																															
NBN	4683	MSKCC	GRCh37	8	90990452	90990452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058291-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			380	41	232	0	ENST00000265433.3:c.580G>A	p.Glu194Lys	p.E194K	ENST00000265433	NM_002485.4	194	Gaa/Aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604664	48604673	+	protein_altering_variant	In_Frame_Del	DEL	CGTCGCTTAT	CGTCGCTTAT	A			P-0058291-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			545	120	582	0	ENST00000342988.3:c.1486_1495delinsA	p.Arg496_Cys499delinsSer	p.R496_C499delinsS	ENST00000342988	NM_005359.5	496	CGTCGCTTATgc/Agc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936093	178936093	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913275		P-0058423-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			68	24	247	0	ENST00000263967.3:c.1635G>T	p.Glu545Asp	p.E545D	ENST00000263967	NM_006218.2	545	gaG/gaT																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5549568	5549568	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138254251		P-0058423-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	89	511	0	ENST00000397747.3:c.595G>A	p.Val199Met	p.V199M	ENST00000397747	NM_025239.3	199	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0059421-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	55	531	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220070	36220070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059421-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	49	535	0	ENST00000222270.7:c.4790G>A	p.Arg1597Gln	p.R1597Q	ENST00000222270	NM_014727.1	1597	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0059421-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	18	288	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575061	48575061	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0059421-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	23	315	0	ENST00000342988.3:c.255del	p.Gly86ValfsTer8	p.G86Vfs*8	ENST00000342988	NM_005359.5	85	gcT/gc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11193153	11193153	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	102	534	0	ENST00000361445.4:c.5348A>G	p.Asp1783Gly	p.D1783G	ENST00000361445	NM_004958.3	1783	gAc/gGc																																																																															
MPL	4352	MSKCC	GRCh37	1	43805695	43805695	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			331	24	556	0	ENST00000372470.3:c.751T>C	p.Ser251Pro	p.S251P	ENST00000372470	NM_005373.2	251	Tcc/Ccc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156830752	156830752	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	55	406	0	ENST00000524377.1:c.26A>C	p.Gln9Pro	p.Q9P	ENST00000524377	NM_002529.3	9	cAg/cCg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163306640	163306640	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	29	169	0	ENST00000271452.3:c.435+2T>A		p.X145_splice	ENST00000271452	NM_145697.2	145																																																																																
CDC73	79577	MSKCC	GRCh37	1	193104690	193104690	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	54	252	0	ENST00000367435.3:c.394T>G	p.Leu132Val	p.L132V	ENST00000367435	NM_024529.4	132	Tta/Gta																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982406	201982406	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	124	624	0	ENST00000359651.3:c.785A>G	p.Glu262Gly	p.E262G	ENST00000359651		262	gAg/gGg																																																																															
TET1	80312	MSKCC	GRCh37	10	70406645	70406645	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs754614889		P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	58	361	0	ENST00000373644.4:c.4159A>G	p.Thr1387Ala	p.T1387A	ENST00000373644	NM_030625.2	1387	Aca/Gca																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123325021	123325021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	133	556	0	ENST00000358487.5:c.307G>A	p.Gly103Ser	p.G103S	ENST00000358487	NM_000141.4	103	Ggc/Agc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64571942	64571942	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	119	660	0	ENST00000337652.1:c.1712T>C	p.Val571Ala	p.V571A	ENST00000337652	NM_130803.2	571	gTg/gCg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	76	527	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244376	46244376	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			444	36	435	0	ENST00000334344.6:c.2470A>G	p.Thr824Ala	p.T824A	ENST00000334344	NM_152641.2	824	Aca/Gca																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112891154	112891154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	40	458	0	ENST00000351677.2:c.488G>A	p.Gly163Asp	p.G163D	ENST00000351677	NM_002834.3	163	gGc/gAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434424	110434424	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	141	579	0	ENST00000375856.3:c.3977T>C	p.Leu1326Ser	p.L1326S	ENST00000375856	NM_003749.2	1326	tTg/tCg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986718	36986718	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1268490942		P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	34	634	1	ENST00000354822.5:c.971C>T	p.Ala324Val	p.A324V	ENST00000354822	NM_001079668.2	324	gCg/gTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42005460	42005460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	175	607	0	ENST00000219905.7:c.3196C>T	p.Arg1066Cys	p.R1066C	ENST00000219905	NM_001164273.1	1066	Cgc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42040841	42040841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	17	397	0	ENST00000219905.7:c.5219C>T	p.Ala1740Val	p.A1740V	ENST00000219905	NM_001164273.1	1740	gCt/gTt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701933	43701933	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	64	275	0	ENST00000382044.4:c.5312del	p.Leu1771TrpfsTer39	p.L1771Wfs*39	ENST00000382044	NM_001141980.1	1771	tTg/tg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701940	43701940	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	66	223	0	ENST00000382044.4:c.5306-1G>A		p.X1769_splice	ENST00000382044	NM_001141980.1	1769																																																																																
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	237	519	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	78	353	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727451	66727451	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519729		P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			284	58	418	0	ENST00000307102.5:c.167A>C	p.Gln56Pro	p.Q56P	ENST00000307102	NM_002755.3	56	cAg/cCg																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727536	66727536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	32	430	0	ENST00000307102.5:c.252G>T	p.Lys84Asn	p.K84N	ENST00000307102	NM_002755.3	84	aaG/aaT																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476323	88476323	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	61	491	1	ENST00000360948.2:c.1809C>A	p.Phe603Leu	p.F603L	ENST00000360948	NM_001012338.2	603	ttC/ttA																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862857	9862857	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	32	526	0	ENST00000330684.3:c.2446A>G	p.Asn816Asp	p.N816D	ENST00000330684	NM_001134407.1	816	Aac/Gac																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041519	14041519	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1161291089		P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	61	377	0	ENST00000311895.7:c.2066G>A	p.Arg689His	p.R689H	ENST00000311895	NM_005236.2	689	cGt/cAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822379	72822380	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	158	866	0	ENST00000268489.5:c.9795dup	p.Thr3266HisfsTer165	p.T3266Hfs*165	ENST00000268489	NM_006885.3	3265	-/C																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827915	72827915	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753622432		P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	90	618	0	ENST00000268489.5:c.8666G>A	p.Arg2889Gln	p.R2889Q	ENST00000268489	NM_006885.3	2889	cGg/cAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831215	72831215	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	100	658	0	ENST00000268489.5:c.5366A>G	p.Gln1789Arg	p.Q1789R	ENST00000268489	NM_006885.3	1789	cAa/cGa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346865	89346865	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199785661		P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	61	617	1	ENST00000301030.4:c.6085G>A	p.Val2029Ile	p.V2029I	ENST00000301030	NM_001256183.1	2029	Gtc/Atc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17125941	17125941	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367843558		P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	75	576	0	ENST00000285071.4:c.653G>A	p.Arg218His	p.R218H	ENST00000285071	NM_144997.5	218	cGt/cAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29654857	29654857	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs786202112		P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	48	357	0	ENST00000358273.4:c.5609G>A	p.Arg1870Gln	p.R1870Q	ENST00000358273	NM_001042492.2	1870	cGg/cAg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	27	666	1	ENST00000447079.4:c.4382del	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533887	63533887	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	71	700	0	ENST00000307078.5:c.1267del	p.Leu423SerfsTer35	p.L423Sfs*35	ENST00000307078	NM_004655.3	423	Ctc/tc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4094479	4094479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768826287		P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	59	518	1	ENST00000262948.5:c.1064C>T	p.Ala355Val	p.A355V	ENST00000262948	NM_030662.3	355	gCg/gTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222730	5222731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs766222935		P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	53	563	0	ENST00000357368.4:c.3072dup	p.Val1025ArgfsTer34	p.V1025Rfs*34	ENST00000357368	NM_002850.3	1024	-/C																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602518	10602518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	112	766	0	ENST00000171111.5:c.1060C>T	p.Arg354Trp	p.R354W	ENST00000171111	NM_203500.1	354	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101878	11101878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			358	19	695	0	ENST00000344626.4:c.1298C>T	p.Ala433Val	p.A433V	ENST00000344626	NM_003072.3	433	gCc/gTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290273	15290273	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	30	634	0	ENST00000263388.2:c.3362A>G	p.Asp1121Gly	p.D1121G	ENST00000263388	NM_000435.2	1121	gAc/gGc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375552	15375552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	37	667	0	ENST00000263377.2:c.875C>A	p.Ala292Glu	p.A292E	ENST00000263377	NM_058243.2	292	gCa/gAa																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965467	18965467	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	66	424	0	ENST00000262803.5:c.1214T>C	p.Val405Ala	p.V405A	ENST00000262803	NM_002911.3	405	gTg/gCg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223133	36223133	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	81	819	0	ENST00000222270.7:c.5683A>T	p.Thr1895Ser	p.T1895S	ENST00000222270	NM_014727.1	1895	Acc/Tcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223761	36223761	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747697534		P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	95	769	1	ENST00000222270.7:c.6311G>A	p.Arg2104Gln	p.R2104Q	ENST00000222270	NM_014727.1	2104	cGg/cAg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	51	632	4	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
DNMT3A	1788	MSKCC	GRCh37	2	25468148	25468148	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751419033		P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	88	593	0	ENST00000264709.3:c.1528G>A	p.Val510Ile	p.V510I	ENST00000264709	NM_175629.2	510	Gtt/Att																																																																															
ALK	238	MSKCC	GRCh37	2	29436862	29436862	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	16	437	0	ENST00000389048.3:c.3731A>G	p.His1244Arg	p.H1244R	ENST00000389048	NM_004304.4	1244	cAc/cGc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39250368	39250368	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			98	52	201	0	ENST00000402219.2:c.1203-2A>T		p.X401_splice	ENST00000402219	NM_005633.3	401																																																																																
EPAS1	2034	MSKCC	GRCh37	2	46587791	46587791	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	31	426	0	ENST00000263734.3:c.475del	p.Ser159AlafsTer12	p.S159Afs*12	ENST00000263734	NM_001430.4	157	Aaa/aa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637398	47637398	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	72	371	0	ENST00000233146.2:c.533del	p.Phe178SerfsTer36	p.F178Sfs*36	ENST00000233146	NM_000251.2	178	Ttc/tc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026204	48026204	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs63750440		P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	64	386	0	ENST00000234420.5:c.1082G>A	p.Arg361His	p.R361H	ENST00000234420	NM_000179.2	361	cGc/cAc																																																																															
REL	5966	MSKCC	GRCh37	2	61121652	61121652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	26	301	0	ENST00000295025.8:c.274G>A	p.Glu92Lys	p.E92K	ENST00000295025	NM_002908.2	92	Gaa/Aaa																																																																															
CASP8	841	MSKCC	GRCh37	2	202149922	202149922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	49	542	0	ENST00000358485.4:c.1363G>A	p.Glu455Lys	p.E455K	ENST00000358485	NM_001080125.1	455	Gag/Aag																																																																															
CASP8	841	MSKCC	GRCh37	2	202150030	202150030	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs931648756		P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	72	481	0	ENST00000358485.4:c.1471C>T	p.Arg491Ter	p.R491*	ENST00000358485	NM_001080125.1	491	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	72	719	7	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31372571	31372571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	30	414	0	ENST00000328111.2:c.212C>T	p.Thr71Ile	p.T71I	ENST00000328111	NM_006892.3	71	aCa/aTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41400112	41400112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	20	433	0	ENST00000373198.4:c.647G>A	p.Gly216Asp	p.G216D	ENST00000373198	NM_133170.3	216	gGt/gAt																																																																															
ERG	2078	MSKCC	GRCh37	21	39817345	39817345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	46	500	0	ENST00000288319.7:c.218G>A	p.Ser73Asn	p.S73N	ENST00000288319	NM_182918.3	73	aGc/aAc																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655272	45655272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764295138		P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	93	606	0	ENST00000407780.3:c.580C>T	p.Arg194Trp	p.R194W	ENST00000407780	NM_001283052.1	194	Cgg/Tgg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24143131	24143131	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	53	525	0	ENST00000263121.7:c.363G>T	p.Arg121Ser	p.R121S	ENST00000263121	NM_003073.3	121	agG/agT																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29095882	29095882	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148053495		P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	69	348	0	ENST00000328354.6:c.952C>T	p.Arg318Cys	p.R318C	ENST00000328354	NM_007194.3	318	Cgc/Tgc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645742	12645742	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	89	442	0	ENST00000251849.4:c.727T>C	p.Ser243Pro	p.S243P	ENST00000251849	NM_002880.3	243	Tcc/Ccc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163278	47163278	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372092336		P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			218	61	305	0	ENST00000409792.3:c.2848C>T	p.Arg950Cys	p.R950C	ENST00000409792	NM_014159.6	950	Cgt/Tgt																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898393	63898393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	136	446	0	ENST00000398590.3:c.119C>A	p.Pro40Gln	p.P40Q	ENST00000398590	NM_001177387.1	40	cCg/cAg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71037150	71037150	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	180	441	0	ENST00000318789.4:c.1141C>T	p.Gln381Ter	p.Q381*	ENST00000318789	NM_032682.5	381	Cag/Tag																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665552	138665552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			158	25	377	0	ENST00000330315.3:c.13T>C	p.Tyr5His	p.Y5H	ENST00000330315	NM_023067.3	5	Tac/Cac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	45	310	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186503787	186503789	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	97	302	0	ENST00000323963.5:c.470_472del	p.Val157del	p.V157del	ENST00000323963		155	aTTGtt/att																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	52	779	1	ENST00000382891.5:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382891	NM_133335.3	1341	Ccc/cc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143045841	143045841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	97	411	2	ENST00000262992.4:c.1793C>T	p.Ala598Val	p.A598V	ENST00000262992	NM_001101669.1	598	gCc/gTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539018	187539018	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374444088		P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	28	504	0	ENST00000441802.2:c.8722G>A	p.Val2908Ile	p.V2908I	ENST00000441802	NM_005245.3	2908	Gtc/Atc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539965	187539965	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	86	423	0	ENST00000441802.2:c.7775A>G	p.Asn2592Ser	p.N2592S	ENST00000441802	NM_005245.3	2592	aAt/aGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628049	187628049	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	36	472	0	ENST00000441802.2:c.2933A>G	p.Lys978Arg	p.K978R	ENST00000441802	NM_005245.3	978	aAa/aGa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31451740	31451740	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	32	243	0	ENST00000344624.3:c.2582T>C	p.Met861Thr	p.M861T	ENST00000344624		861	aTg/aCg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753051	57753051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	93	430	0	ENST00000274289.3:c.965G>A	p.Arg322His	p.R322H	ENST00000274289	NM_006622.3	322	cGt/cAt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056416	26056416	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			533	231	527	0	ENST00000343677.2:c.241A>G	p.Lys81Glu	p.K81E	ENST00000343677	NM_005319.3	81	Aaa/Gaa																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910714	29910714	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	199	791	1	ENST00000376809.5:c.254A>G	p.Asp85Gly	p.D85G	ENST00000376809	NM_002116.7	85	gAc/gGc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681453	30681453	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	62	372	0	ENST00000376406.3:c.559A>G	p.Thr187Ala	p.T187A	ENST00000376406	NM_014641.2	187	Aca/Gca																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165344	32165344	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	77	549	0	ENST00000375023.3:c.4784T>C	p.Val1595Ala	p.V1595A	ENST00000375023	NM_004557.3	1595	gTt/gCt																																																																															
PARK2	5071	MSKCC	GRCh37	6	161771192	161771192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	69	517	0	ENST00000366898.1:c.1337G>A	p.Cys446Tyr	p.C446Y	ENST00000366898	NM_004562.2	446	tGc/tAc																																																																															
PARK2	5071	MSKCC	GRCh37	6	161781212	161781212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	45	496	0	ENST00000366898.1:c.1193C>A	p.Ala398Asp	p.A398D	ENST00000366898	NM_004562.2	398	gCc/gAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55229237	55229237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	65	720	0	ENST00000275493.2:c.1544G>A	p.Cys515Tyr	p.C515Y	ENST00000275493	NM_005228.3	515	tGc/tAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509310	106509310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	45	485	0	ENST00000359195.3:c.1304G>A	p.Cys435Tyr	p.C435Y	ENST00000359195	NM_002649.2	435	tGc/tAc																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	80	599	1	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			449	86	567	2	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878464	151878464	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	199	530	0	ENST00000262189.6:c.6481C>T	p.Gln2161Ter	p.Q2161*	ENST00000262189	NM_170606.2	2161	Caa/Taa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38184266	38184266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	26	258	0	ENST00000317025.8:c.1690G>A	p.Ala564Thr	p.A564T	ENST00000317025	NM_023034.1	564	Gca/Aca																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738410	145738410	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	169	711	0	ENST00000428558.2:c.2575A>G	p.Arg859Gly	p.R859G	ENST00000428558	NM_004260.3	859	Agg/Ggg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341258	8341258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	77	285	2	ENST00000356435.5:c.4958G>A	p.Ser1653Asn	p.S1653N	ENST00000356435		1653	aGc/aAc																																																																															
TEK	7010	MSKCC	GRCh37	9	27190548	27190548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	45	363	0	ENST00000380036.4:c.1349C>T	p.Ala450Val	p.A450V	ENST00000380036	NM_000459.3	450	gCc/gTc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342722	87342722	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	94	430	0	ENST00000277120.3:c.1007T>C	p.Val336Ala	p.V336A	ENST00000277120		336	gTt/gCt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139407503	139407503	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	16	371	0	ENST00000277541.6:c.2437T>C	p.Tyr813His	p.Y813H	ENST00000277541	NM_017617.3	813	Tac/Cac																																																																															
ATRX	546	MSKCC	GRCh37	X	76939814	76939814	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			75	64	152	0	ENST00000373344.5:c.934A>G	p.Thr312Ala	p.T312A	ENST00000373344	NM_000489.3	312	Aca/Gca																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0059427-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	106	630	1	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0059595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			79	70	405	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061160	38061161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCGCCG			P-0059595-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	52	459	0	ENST00000250448.2:c.822_828dup	p.Gly277ArgfsTer18	p.G277Rfs*18	ENST00000250448	NM_004496.3	276	-/CGGCGGC																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068418	26068418	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056640-T03-IM7									Unknown	SOMATIC				MSK-IMPACT			257	29	164	0	ENST00000435504.4:c.72C>A	p.Tyr24Ter	p.Y24*	ENST00000435504		24	taC/taA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0057852-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			48	226	650	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992580	72992580	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201757720		P-0057852-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			112	57	585	0	ENST00000268489.5:c.1465G>A	p.Glu489Lys	p.E489K	ENST00000268489	NM_006885.3	489	Gag/Aag																																																																															
CALR	811	MSKCC	GRCh37	19	13051093	13051093	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1451773406		P-0057852-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			177	54	540	1	ENST00000316448.5:c.529C>T	p.Arg177Trp	p.R177W	ENST00000316448	NM_004343.3	177	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420163	49420180	+	inframe_deletion	In_Frame_Del	DEL	TCTGGTGAGGCAGCAGCT	TCTGGTGAGGCAGCAGCT	-			P-0057852-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			37	104	603	0	ENST00000301067.7:c.15569_15586del	p.Gln5190_Met5196delinsLeu	p.Q5190_M5196delinsL	ENST00000301067	NM_003482.3	5190	cAGCTGCTGCCTCACCAGAtg/ctg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41215917	41215917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057852-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			28	27	289	0	ENST00000357654.3:c.5126G>A	p.Gly1709Glu	p.G1709E	ENST00000357654	NM_007294.3	1709	gGa/gAa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289683	15289683	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057852-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			209	55	647	0	ENST00000263388.2:c.3788C>G	p.Pro1263Arg	p.P1263R	ENST00000263388	NM_000435.2	1263	cCt/cGt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52723096	52723096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057852-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			181	19	494	0	ENST00000322088.6:c.1281G>A	p.Met427Ile	p.M427I	ENST00000322088	NM_014225.5	427	atG/atA																																																																															
TRIP13	9319	MSKCC	GRCh37	5	907270	907270	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057852-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			36	45	340	0	ENST00000166345.3:c.634A>C	p.Ile212Leu	p.I212L	ENST00000166345	NM_004237.3	212	Ata/Cta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577560	7577560	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	260	273	0	ENST00000269305.4:c.721del	p.Ser241ProfsTer6	p.S241Pfs*6	ENST00000269305	NM_001126112.2	241	Tcc/cc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743865	40743865	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758531464		P-0058396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			542	462	246	0	ENST00000373198.4:c.3130G>A	p.Val1044Ile	p.V1044I	ENST00000373198	NM_133170.3	1044	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112175225	112175225	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	121	287	0	ENST00000257430.4:c.3934G>T	p.Gly1312Ter	p.G1312*	ENST00000257430	NM_000038.5	1312	Gga/Tga																																																																															
ATRX	546	MSKCC	GRCh37	X	76939715	76939715	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149249195		P-0058396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			202	73	281	0	ENST00000373344.5:c.1033G>A	p.Ala345Thr	p.A345T	ENST00000373344	NM_000489.3	345	Gca/Aca																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053237	180053237	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372947534		P-0058396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	148	366	1	ENST00000261937.6:c.1132C>T	p.Arg378Cys	p.R378C	ENST00000261937	NM_182925.4	378	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112170852	112170852	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	67	206	0	ENST00000257430.4:c.1948G>T	p.Glu650Ter	p.E650*	ENST00000257430	NM_000038.5	650	Gag/Tag																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197033	123197033	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058396-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	99	184	0	ENST00000218089.9:c.1799A>G	p.Tyr600Cys	p.Y600C	ENST00000218089	NM_001042749.1	600	tAt/tGt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11199630	11199630	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058723-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			592	32	431	0	ENST00000361445.4:c.4958G>A	p.Trp1653Ter	p.W1653*	ENST00000361445	NM_004958.3	1653	tGg/tAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056290	27056290	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058723-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			679	39	518	0	ENST00000324856.7:c.1287del	p.Tyr430ThrfsTer3	p.Y430Tfs*3	ENST00000324856	NM_006015.4	429	cGg/cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0058723-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			449	11	283	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482874	67482874	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0058723-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			662	67	497	0	ENST00000327367.4:c.1278G>C	p.Ter426TyrextTer6	p.*426Yext*6	ENST00000327367	NM_005902.3	426	taG/taC																																																																															
PHF6	84295	MSKCC	GRCh37	X	133547590	133547590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058723-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			528	34	344	0	ENST00000332070.3:c.488G>A	p.Arg163His	p.R163H	ENST00000332070	NM_032458.2	163	cGc/cAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0059311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	152	627	0	ENST00000346208.3:c.1003dup	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5211743	5211743	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0059311-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	77	666	0	ENST00000357368.4:c.5092A>C	p.Ile1698Leu	p.I1698L	ENST00000357368	NM_002850.3	1698	Atc/Ctc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519922		P-0059334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	190	454	0	ENST00000397062.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000397062	NM_006164.4	79	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0059334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	225	418	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986889	36986889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			538	125	595	0	ENST00000354822.5:c.800G>A	p.Gly267Glu	p.G267E	ENST00000354822	NM_001079668.2	267	gGg/gAg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103506683	103506683	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	53	369	0	ENST00000355739.4:c.426C>A	p.Asp142Glu	p.D142E	ENST00000355739	NM_000123.3	142	gaC/gaA																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434482	110434483	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0059334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	105	500	0	ENST00000375856.3:c.3918dup	p.Gly1307ArgfsTer18	p.G1307Rfs*18	ENST00000375856	NM_003749.2	1306	-/C																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679193	88679193	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	161	402	0	ENST00000360948.2:c.844C>G	p.Leu282Val	p.L282V	ENST00000360948	NM_001012338.2	282	Ctg/Gtg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2114420	2114420	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	325	505	0	ENST00000219476.3:c.1591A>G	p.Ile531Val	p.I531V	ENST00000219476	NM_000548.3	531	Atc/Gtc																																																																															
NF1	4763	MSKCC	GRCh37	17	29587526	29587526	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	160	340	0	ENST00000358273.4:c.4570A>T	p.Ser1524Cys	p.S1524C	ENST00000358273	NM_001042492.2	1524	Agc/Tgc																																																																															
INSR	3643	MSKCC	GRCh37	19	7170752	7170752	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	250	424	0	ENST00000302850.5:c.1279T>A	p.Phe427Ile	p.F427I	ENST00000302850	NM_000208.2	427	Ttc/Atc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61724085	61724085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			747	152	408	0	ENST00000401558.2:c.817G>A	p.Gly273Ser	p.G273S	ENST00000401558	NM_003400.3	273	Ggt/Agt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225422513	225422513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	130	326	0	ENST00000264414.4:c.127G>A	p.Glu43Lys	p.E43K	ENST00000264414	NM_003590.4	43	Gaa/Aaa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670533	134670533	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			727	117	480	0	ENST00000398015.3:c.444G>T	p.Gln148His	p.Q148H	ENST00000398015	NM_004441.4	148	caG/caT																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670829	134670829	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			571	255	518	0	ENST00000398015.3:c.740T>C	p.Met247Thr	p.M247T	ENST00000398015	NM_004441.4	247	aTg/aCg																																																																															
KIT	3815	MSKCC	GRCh37	4	55561752	55561752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	292	456	0	ENST00000288135.5:c.142G>A	p.Val48Ile	p.V48I	ENST00000288135	NM_000222.2	48	Gtc/Atc																																																																															
KDR	3791	MSKCC	GRCh37	4	55956196	55956196	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	217	400	0	ENST00000263923.4:c.3119A>G	p.Asn1040Ser	p.N1040S	ENST00000263923	NM_002253.2	1040	aAc/aGc																																																																															
NPM1	4869	MSKCC	GRCh37	5	170818426	170818426	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0059334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	39	208	0	ENST00000296930.5:c.256A>G	p.Thr86Ala	p.T86A	ENST00000296930	NM_002520.6	86	Acg/Gcg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117665245	117665245	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			275	86	334	0	ENST00000368508.3:c.4502C>G	p.Ser1501Cys	p.S1501C	ENST00000368508	NM_002944.2	1501	tCt/tGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521292	8521292	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059334-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	170	329	0	ENST00000356435.5:c.946C>A	p.Gln316Lys	p.Q316K	ENST00000356435		316	Cag/Aag																																																																															
KDR	3791	MSKCC	GRCh37	4	55961109	55961109	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374755237		P-0059459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	37	365	2	ENST00000263923.4:c.2831G>A	p.Arg944Gln	p.R944Q	ENST00000263923	NM_002253.2	944	cGa/cAa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143191873	143191873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	338	489	0	ENST00000262992.4:c.558G>T	p.Met186Ile	p.M186I	ENST00000262992	NM_001101669.1	186	atG/atT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092823	27092823	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0059459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	62	487	0	ENST00000324856.7:c.2844T>A	p.Tyr948Ter	p.Y948*	ENST00000324856	NM_006015.4	948	taT/taA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578450	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0059459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	217	785	0	ENST00000269305.4:c.480_481delinsTT	p.Met160_Ala161delinsIleSer	p.M160_A161delinsIS	ENST00000269305	NM_001126112.2	160	atGGcc/atTTcc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21628717	21628717	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			130	17	433	0	ENST00000421138.2:c.991A>T	p.Thr331Ser	p.T331S	ENST00000421138		331	Acg/Tcg																																																																															
MGA	23269	MSKCC	GRCh37	15	42042208	42042208	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0059459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	78	529	0	ENST00000219905.7:c.6404del	p.Lys2135ArgfsTer44	p.K2135Rfs*44	ENST00000219905	NM_001164273.1	2135	Aag/ag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3656655	3656655	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			651	130	585	0	ENST00000294008.3:c.580A>T	p.Thr194Ser	p.T194S	ENST00000294008	NM_032444.2	194	Aca/Tca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991359	72991359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			552	85	487	0	ENST00000268489.5:c.2686G>T	p.Ala896Ser	p.A896S	ENST00000268489	NM_006885.3	896	Gcc/Tcc																																																																															
SERPINB4	6318	MSKCC	GRCh37	18	61305006	61305006	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	32	346	0	ENST00000341074.5:c.1120A>T	p.Arg374Trp	p.R374W	ENST00000341074	NM_002974.2	374	Agg/Tgg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18968301	18968301	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0059459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	134	540	0	ENST00000262803.5:c.2141A>C	p.Asn714Thr	p.N714T	ENST00000262803	NM_002911.3	714	aAc/aCc																																																																															
ERG	2078	MSKCC	GRCh37	21	39795437	39795437	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	172	548	1	ENST00000288319.7:c.283G>T	p.Gly95Cys	p.G95C	ENST00000288319	NM_182918.3	95	Ggc/Tgc																																																																															
KDR	3791	MSKCC	GRCh37	4	55970998	55970998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	69	495	0	ENST00000263923.4:c.1799C>A	p.Thr600Lys	p.T600K	ENST00000263923	NM_002253.2	600	aCa/aAa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931820	68931820	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	61	392	0	ENST00000288368.4:c.250C>G	p.His84Asp	p.H84D	ENST00000288368	NM_024870.2	84	Cat/Gat																																																																															
XIAP	331	MSKCC	GRCh37	X	123022477	123022477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059459-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	34	360	0	ENST00000355640.3:c.886G>T	p.Asp296Tyr	p.D296Y	ENST00000355640		296	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1131691013		P-0059477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	222	501	0	ENST00000269305.4:c.389T>C	p.Leu130Pro	p.L130P	ENST00000269305	NM_001126112.2	130	cTc/cCc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061098	38061098	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			777	95	585	0	ENST00000250448.2:c.891del	p.Ser298LeufsTer23	p.S298Lfs*23	ENST00000250448	NM_004496.3	297	ccC/cc																																																																															
ATM	472	MSKCC	GRCh37	11	108216590	108216590	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	43	336	0	ENST00000278616.4:c.8539G>C	p.Glu2847Gln	p.E2847Q	ENST00000278616	NM_000051.3	2847	Gag/Cag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441851	49441851	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0059477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			803	69	416	0	ENST00000301067.7:c.4133A>G	p.Asp1378Gly	p.D1378G	ENST00000301067	NM_003482.3	1378	gAc/gGc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81922810	81922810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	127	385	0	ENST00000359376.3:c.799G>A	p.Glu267Lys	p.E267K	ENST00000359376	NM_002661.3	267	Gag/Aag																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31380451	31380451	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			830	170	599	0	ENST00000328111.2:c.941G>T	p.Gly314Val	p.G314V	ENST00000328111	NM_006892.3	314	gGc/gTc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651359	52651359	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0059477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	61	399	0	ENST00000394830.3:c.1737A>C	p.Lys579Asn	p.K579N	ENST00000394830	NM_018313.4	579	aaA/aaC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542708	187542708	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	70	440	0	ENST00000441802.2:c.5032G>T	p.Glu1678Ter	p.E1678*	ENST00000441802	NM_005245.3	1678	Gaa/Taa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31486614	31486617	+	frameshift_variant	Frame_Shift_Del	DEL	TCAA	TCAA	-			P-0059477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			581	37	344	0	ENST00000344624.3:c.1895_1898del	p.Ile632LysfsTer3	p.I632Kfs*3	ENST00000344624		632	aTTGAa/aa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	135	380	1	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	285	795	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	252	581	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508533	106508533	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773456619		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	95	554	0	ENST00000359195.3:c.527C>T	p.Thr176Met	p.T176M	ENST00000359195	NM_002649.2	176	aCg/aTg																																																																															
REL	5966	MSKCC	GRCh37	2	61128146	61128146	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	108	237	0	ENST00000295025.8:c.322C>T	p.Arg108Ter	p.R108*	ENST00000295025	NM_002908.2	108	Cga/Tga																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93964405	93964405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	30	395	0	ENST00000369303.4:c.2492C>T	p.Ser831Phe	p.S831F	ENST00000369303	NM_004440.3	831	tCt/tTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762108866		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			814	146	755	4	ENST00000268489.5:c.10215dup	p.Gly3406ArgfsTer25	p.G3406Rfs*25	ENST00000268489	NM_006885.3	3405	-/C																																																																															
EP300	2033	MSKCC	GRCh37	22	41573200	41573200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	287	718	0	ENST00000263253.7:c.5485C>T	p.Arg1829Cys	p.R1829C	ENST00000263253	NM_001429.3	1829	Cgc/Tgc																																																																															
PGR	5241	MSKCC	GRCh37	11	100999449	100999450	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs777896116		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	195	781	0	ENST00000325455.5:c.352_353del	p.Leu118ValfsTer65	p.L118Vfs*65	ENST00000325455	NM_001202474.3	118	CTg/g																																																																															
E2F3	1871	MSKCC	GRCh37	6	20481601	20481601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	151	541	0	ENST00000346618.3:c.670G>A	p.Val224Ile	p.V224I	ENST00000346618	NM_001949.4	224	Gtt/Att																																																																															
SRC	6714	MSKCC	GRCh37	20	36031750	36031750	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs879255268		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			696	255	702	0	ENST00000358208.4:c.1579G>A	p.Glu527Lys	p.E527K	ENST00000358208		527	Gag/Aag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289925	15289925	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35031555		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			805	154	857	1	ENST00000263388.2:c.3629G>A	p.Arg1210His	p.R1210H	ENST00000263388	NM_000435.2	1210	cGc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254851	16254851	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748777153		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	216	595	0	ENST00000375759.3:c.2116C>T	p.Arg706Cys	p.R706C	ENST00000375759	NM_015001.2	706	Cgt/Tgt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395147	139395147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			732	305	760	1	ENST00000277541.6:c.5791G>A	p.Ala1931Thr	p.A1931T	ENST00000277541	NM_017617.3	1931	Gcc/Acc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162688917	162688917	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	155	381	0	ENST00000367921.3:c.64A>G	p.Lys22Glu	p.K22E	ENST00000367921	NM_006182.2	22	Aaa/Gaa																																																																															
ERG	2078	MSKCC	GRCh37	21	39795341	39795341	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1028107759		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	246	544	0	ENST00000288319.7:c.379G>A	p.Val127Met	p.V127M	ENST00000288319	NM_182918.3	127	Gtg/Atg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149499034	149499034	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs921756253		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	184	590	0	ENST00000261799.4:c.2794G>A	p.Glu932Lys	p.E932K	ENST00000261799	NM_002609.3	932	Gag/Aag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883554	37883554	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs574436396		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	234	638	0	ENST00000269571.5:c.3166G>A	p.Gly1056Ser	p.G1056S	ENST00000269571		1056	Ggt/Agt																																																																															
TET1	80312	MSKCC	GRCh37	10	70450655	70450655	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771857626		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	215	591	0	ENST00000373644.4:c.5495C>T	p.Ser1832Leu	p.S1832L	ENST00000373644	NM_030625.2	1832	tCg/tTg																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110213	3110213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			630	65	692	0	ENST00000078429.4:c.203C>T	p.Ser68Leu	p.S68L	ENST00000078429	NM_002067.2	68	tCg/tTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341313	89341313	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773189154		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	83	199	0	ENST00000301030.4:c.7622C>T	p.Ala2541Val	p.A2541V	ENST00000301030	NM_001256183.1	2541	gCg/gTg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060665	38060665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			895	400	862	2	ENST00000250448.2:c.1324G>A	p.Ala442Thr	p.A442T	ENST00000250448	NM_004496.3	442	Gcc/Acc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046378	69046378	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375506738		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	208	518	0	ENST00000288368.4:c.3851C>T	p.Ala1284Val	p.A1284V	ENST00000288368	NM_024870.2	1284	gCg/gTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866342	37866342	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770976272		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	224	563	0	ENST00000269571.5:c.647C>T	p.Thr216Met	p.T216M	ENST00000269571		216	aCg/aTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37882896	37882896	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1377136060		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	202	610	0	ENST00000269571.5:c.2954G>A	p.Arg985His	p.R985H	ENST00000269571		985	cGc/cAc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563152	21563152	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774128777		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			597	266	756	0	ENST00000382592.4:c.767C>T	p.Pro256Leu	p.P256L	ENST00000382592	NM_014572.2	256	cCg/cTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941429	71941429	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754156985		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			768	229	756	0	ENST00000298229.2:c.1114C>T	p.Arg372Cys	p.R372C	ENST00000298229	NM_001567.3	372	Cgt/Tgt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719271	61719271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	157	481	0	ENST00000401558.2:c.1786C>T	p.Arg596Cys	p.R596C	ENST00000401558	NM_003400.3	596	Cgc/Tgc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753390	42753390	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776319250		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			837	141	875	2	ENST00000222329.4:c.874G>A	p.Gly292Arg	p.G292R	ENST00000222329	NM_006494.2	292	Ggg/Agg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485765	57485765	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs893327176		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	206	537	0	ENST00000371085.3:c.1066C>T	p.Arg356Cys	p.R356C	ENST00000371085	NM_000516.4	356	Cgt/Tgt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948527	71948527	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749369759		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			939	86	794	1	ENST00000298229.2:c.3239G>A	p.Arg1080His	p.R1080H	ENST00000298229	NM_001567.3	1080	cGt/cAt																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30128053	30128053	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1246728652		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			613	258	679	0	ENST00000263025.4:c.1076G>A	p.Arg359Gln	p.R359Q	ENST00000263025	NM_002746.2	359	cGg/cAg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38954955	38954955	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111974076		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	84	322	0	ENST00000357387.3:c.2618G>A	p.Arg873His	p.R873H	ENST00000357387	NM_152756.3	873	cGt/cAt																																																																															
RARA	5914	MSKCC	GRCh37	17	38512308	38512308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	181	516	0	ENST00000254066.5:c.1219C>T	p.Pro407Ser	p.P407S	ENST00000254066	NM_000964.3	407	Ccg/Tcg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965427	18965427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	213	454	0	ENST00000262803.5:c.1174G>A	p.Ala392Thr	p.A392T	ENST00000262803	NM_002911.3	392	Gcc/Acc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638884	176638884	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765811504		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	239	590	0	ENST00000439151.2:c.3484C>T	p.Arg1162Cys	p.R1162C	ENST00000439151	NM_022455.4	1162	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112116551	112116551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748193367		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	68	390	0	ENST00000257430.4:c.596C>T	p.Ala199Val	p.A199V	ENST00000257430	NM_000038.5	199	gCg/gTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272237	15272237	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs189252435		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	263	702	2	ENST00000263388.2:c.6202G>A	p.Gly2068Arg	p.G2068R	ENST00000263388	NM_000435.2	2068	Ggg/Agg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31389096	31389096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	202	548	0	ENST00000328111.2:c.2009G>A	p.Arg670Gln	p.R670Q	ENST00000328111	NM_006892.3	670	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	104	348	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243776975	243776975	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	68	313	0	ENST00000263826.5:c.694G>A	p.Glu232Lys	p.E232K	ENST00000263826	NM_005465.4	232	Gag/Aag																																																																															
CCND1	595	MSKCC	GRCh37	11	69458700	69458700	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	257	605	0	ENST00000227507.2:c.515A>C	p.Glu172Ala	p.E172A	ENST00000227507	NM_053056.2	172	gAg/gCg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226551	2226551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	366	858	1	ENST00000398665.3:c.4031C>T	p.Ala1344Val	p.A1344V	ENST00000398665	NM_032482.2	1344	gCg/gTg																																																																															
INHA	3623	MSKCC	GRCh37	2	220439770	220439770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			763	318	837	0	ENST00000243786.2:c.623G>A	p.Arg208Gln	p.R208Q	ENST00000243786	NM_002191.3	208	cGg/cAg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45657059	45657059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			636	61	513	0	ENST00000407780.3:c.97G>A	p.Val33Met	p.V33M	ENST00000407780	NM_001283052.1	33	Gtg/Atg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803399	1803399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			988	81	884	1	ENST00000260795.2:c.668G>A	p.Arg223His	p.R223H	ENST00000260795		223	cGc/cAc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750610	41750610	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	117	500	0	ENST00000226382.2:c.18T>A	p.Tyr6Ter	p.Y6*	ENST00000226382	NM_003924.3	6	taT/taA																																																																															
JAK2	3717	MSKCC	GRCh37	9	5065041	5065041	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1471795147		P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	130	404	1	ENST00000381652.3:c.1214+1G>A		p.X405_splice	ENST00000381652	NM_004972.3	405																																																																																
TGFBR1	7046	MSKCC	GRCh37	9	101894953	101894953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	133	499	0	ENST00000374994.4:c.506C>T	p.Pro169Leu	p.P169L	ENST00000374994	NM_004612.2	169	cCt/cTt																																																																															
ABL1	25	MSKCC	GRCh37	9	133761032	133761032	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			590	237	624	0	ENST00000318560.5:c.3355A>T	p.Ser1119Cys	p.S1119C	ENST00000318560	NM_005157.4	1119	Agt/Tgt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44941879	44941879	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	129	159	0	ENST00000377967.4:c.3203C>A	p.Ser1068Ter	p.S1068*	ENST00000377967	NM_021140.2	1068	tCa/tAa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222480	53222480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059571-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	328	363	0	ENST00000375401.3:c.4352G>A	p.Arg1451Gln	p.R1451Q	ENST00000375401	NM_004187.3	1451	cGg/cAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692979	89692979	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs398123325		P-0059574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	174	400	0	ENST00000371953.3:c.463T>C	p.Tyr155His	p.Y155H	ENST00000371953	NM_000314.4	155	Tat/Cat																																																																															
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	252	514	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264066389		P-0059574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	183	469	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112174412	112174412	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	156	464	0	ENST00000257430.4:c.3121C>T	p.Gln1041Ter	p.Q1041*	ENST00000257430	NM_000038.5	1041	Caa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660045		P-0059574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	217	513	0	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913240		P-0059574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	153	341	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375008	45375008	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0059574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	155	460	0	ENST00000262160.6:c.835del	p.Tyr279IlefsTer4	p.Y279Ifs*4	ENST00000262160	NM_005901.5	279	Tat/at																																																																															
CENPA	1058	MSKCC	GRCh37	2	27016023	27016023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	207	467	0	ENST00000335756.4:c.299C>T	p.Ala100Val	p.A100V	ENST00000335756	NM_001809.3	100	gCa/gTa																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99812422	99812422	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059574-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	152	350	0	ENST00000280892.6:c.247A>T	p.Ile83Phe	p.I83F	ENST00000280892	NM_001130678.1	83	Atc/Ttc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131895051	131895051	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370769989		P-0059578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	8	217	0	ENST00000265335.6:c.205G>A	p.Asp69Asn	p.D69N	ENST00000265335		69	Gat/Aat																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191448	185191448	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1012339817		P-0059578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			732	41	469	0	ENST00000265026.3:c.2329G>A	p.Glu777Lys	p.E777K	ENST00000265026	NM_004721.4	777	Gaa/Aaa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120465	94120465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	52	452	0	ENST00000369303.4:c.586G>T	p.Val196Phe	p.V196F	ENST00000369303	NM_004440.3	196	Gtt/Ttt																																																																															
TET1	80312	MSKCC	GRCh37	10	70451210	70451210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	33	527	0	ENST00000373644.4:c.6050C>T	p.Ser2017Leu	p.S2017L	ENST00000373644	NM_030625.2	2017	tCg/tTg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753351	42753353	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0059578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			859	71	720	0	ENST00000222329.4:c.911_913del	p.Ser304del	p.S304del	ENST00000222329	NM_006494.2	304	tCCTtc/ttc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178948097	178948097	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0059578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	95	344	0	ENST00000263967.3:c.2869A>C	p.Thr957Pro	p.T957P	ENST00000263967	NM_006218.2	957	Aca/Cca																																																																															
KIT	3815	MSKCC	GRCh37	4	55573454	55573454	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0059578-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	62	307	0	ENST00000288135.5:c.1115+1G>A		p.X372_splice	ENST00000288135	NM_000222.2	372																																																																																
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0058721-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			292	327	745	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222163	53222163	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058721-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			589	34	673	0	ENST00000375401.3:c.4669C>T	p.Gln1557Ter	p.Q1557*	ENST00000375401	NM_004187.3	1557	Cag/Tag																																																																															
RB1	5925	MSKCC	GRCh37	13	48916747	48916747	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131690915		P-0058721-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			73	25	319	0	ENST00000267163.4:c.277C>T	p.Gln93Ter	p.Q93*	ENST00000267163	NM_000321.2	93	Caa/Taa																																																																															
ATRX	546	MSKCC	GRCh37	X	76938039	76938039	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058721-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			464	29	545	0	ENST00000373344.5:c.2709A>T	p.Glu903Asp	p.E903D	ENST00000373344	NM_000489.3	903	gaA/gaT																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880219	37880229	+	protein_altering_variant	In_Frame_Del	DEL	TTGAGGGAAAA	TTGAGGGAAAA	GCCAAAGC			P-0058721-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	262	567	1	ENST00000269571.5:c.2263_2273delinsGCCAAAGC	p.Leu755_Asn758delinsAlaLysAla	p.L755_N758delinsAKA	ENST00000269571		755	TTGAGGGAAAAc/GCCAAAGCc																																																																															
RET	5979	MSKCC	GRCh37	10	43622086	43622086	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058788-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			414	25	696	0	ENST00000355710.3:c.3103G>C	p.Glu1035Gln	p.E1035Q	ENST00000355710	NM_020975.4	1035	Gag/Cag																																																																															
CTR9	9646	MSKCC	GRCh37	11	10789386	10789386	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058788-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			399	47	559	0	ENST00000361367.2:c.1720C>G	p.Leu574Val	p.L574V	ENST00000361367	NM_014633.3	574	Ctt/Gtt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865789	57865789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058788-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	29	802	0	ENST00000228682.2:c.3266G>C	p.Ser1089Thr	p.S1089T	ENST00000228682	NM_005269.2	1089	aGt/aCt																																																																															
MSI1	4440	MSKCC	GRCh37	12	120789156	120789156	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1433178108		P-0058788-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			291	30	605	0	ENST00000257552.2:c.781G>A	p.Glu261Lys	p.E261K	ENST00000257552	NM_002442.3	261	Gag/Aag																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527973	103527973	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0058788-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			455	37	616	0	ENST00000355739.4:c.3281C>G	p.Ser1094Ter	p.S1094*	ENST00000355739	NM_000123.3	1094	tCa/tGa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3827617	3827617	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058788-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			318	32	422	0	ENST00000262367.5:c.2155C>G	p.Gln719Glu	p.Q719E	ENST00000262367	NM_004380.2	719	Caa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0058788-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	131	951	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29548909	29548909	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1135402820		P-0058788-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			167	41	290	0	ENST00000358273.4:c.1683G>A	p.Trp561Ter	p.W561*	ENST00000358273	NM_001042492.2	561	tgG/tgA																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78858859	78858859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058788-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			408	33	782	0	ENST00000306801.3:c.1894G>A	p.Glu632Lys	p.E632K	ENST00000306801	NM_020761.2	632	Gag/Aag																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866381	42866381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058788-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			399	50	817	0	ENST00000398585.3:c.251C>T	p.Ser84Phe	p.S84F	ENST00000398585	NM_001135099.1	84	tCc/tTc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437669	52437669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058788-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			358	37	861	1	ENST00000460680.1:c.1492G>A	p.Glu498Lys	p.E498K	ENST00000460680	NM_004656.3	498	Gag/Aag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920436	134920436	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058788-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			423	38	702	0	ENST00000398015.3:c.2251C>G	p.Leu751Val	p.L751V	ENST00000398015	NM_004441.4	751	Ctg/Gtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0058788-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			255	18	307	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512455	149512455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058788-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			474	30	871	0	ENST00000261799.4:c.985G>C	p.Glu329Gln	p.E329Q	ENST00000261799	NM_002609.3	329	Gag/Cag																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43738986	43738986	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0058788-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			349	21	784	0	ENST00000523873.1:c.3G>A	p.Met1?	p.M1?	ENST00000523873		1	atG/atA																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520081	106520081	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058788-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	24	397	0	ENST00000359195.3:c.2509G>C	p.Asp837His	p.D837H	ENST00000359195	NM_002649.2	837	Gat/Cat																																																																															
TEK	7010	MSKCC	GRCh37	9	27220069	27220069	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs955187413		P-0058788-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			414	29	591	0	ENST00000380036.4:c.3126G>A	p.Met1042Ile	p.M1042I	ENST00000380036	NM_000459.3	1042	atG/atA																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15840928	15840928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058788-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			95	19	160	0	ENST00000307771.7:c.1012G>A	p.Glu338Lys	p.E338K	ENST00000307771	NM_005089.3	338	Gaa/Aaa																																																																															
MED12	9968	MSKCC	GRCh37	X	70340946	70340946	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058788-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			222	43	409	0	ENST00000374080.3:c.679G>C	p.Glu227Gln	p.E227Q	ENST00000374080		227	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059009-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			465	275	759	0	ENST00000269305.4:c.472C>G	p.Arg158Gly	p.R158G	ENST00000269305	NM_001126112.2	158	Cgc/Ggc																																																																															
LYN	4067	MSKCC	GRCh37	8	56922550	56922550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059009-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1238	331	583	0	ENST00000519728.1:c.1420G>A	p.Asp474Asn	p.D474N	ENST00000519728	NM_002350.3	474	Gac/Aac																																																																															
PREX2	80243	MSKCC	GRCh37	8	68981315	68981315	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866864487		P-0059009-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			669	132	291	0	ENST00000288368.4:c.1387C>T	p.Arg463Cys	p.R463C	ENST00000288368	NM_024870.2	463	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0059009-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			278	209	316	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118377327	118377327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059009-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			432	391	609	0	ENST00000534358.1:c.10720G>T	p.Asp3574Tyr	p.D3574Y	ENST00000534358	NM_005933.3	3574	Gac/Tac																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30105605	30105606	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0059009-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			530	274	576	0	ENST00000331968.5:c.1080_1081delinsTT	p.Met360_Glu361delinsIleTer	p.M360_E361delinsI*	ENST00000331968	NM_002742.2	360	atGGaa/atTTaa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992881	72992881	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059009-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	110	581	0	ENST00000268489.5:c.1164G>T	p.Glu388Asp	p.E388D	ENST00000268489	NM_006885.3	388	gaG/gaT																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376260	225376260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059009-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			464	145	336	0	ENST00000264414.4:c.694G>A	p.Val232Ile	p.V232I	ENST00000264414	NM_003590.4	232	Gta/Ata																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957524	1957532	+	inframe_deletion	In_Frame_Del	DEL	GGGAAGAAG	GGGAAGAAG	-			P-0059009-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			554	213	517	1	ENST00000382891.5:c.2623_2631del	p.Gly875_Lys877del	p.G875_K877del	ENST00000382891	NM_133335.3	875	GGGAAGAAG/-																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540904	187540904	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059009-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			660	122	658	0	ENST00000441802.2:c.6836A>T	p.Asn2279Ile	p.N2279I	ENST00000441802	NM_005245.3	2279	aAc/aTc																																																																															
HGF	3082	MSKCC	GRCh37	7	81399221	81399221	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059009-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			572	89	599	0	ENST00000222390.5:c.67C>A	p.Pro23Thr	p.P23T	ENST00000222390	NM_000601.4	23	Ccc/Acc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70970971	70970971	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059009-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1348	101	519	0	ENST00000276594.2:c.1290G>T	p.Arg430Ser	p.R430S	ENST00000276594	NM_024504.3	430	agG/agT																																																																															
ATRX	546	MSKCC	GRCh37	X	76874284	76874284	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059009-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			399	82	340	0	ENST00000373344.5:c.5438G>T	p.Gly1813Val	p.G1813V	ENST00000373344	NM_000489.3	1813	gGa/gTa																																																																															
ATRX	546	MSKCC	GRCh37	X	76938865	76938865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059009-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			524	108	505	0	ENST00000373344.5:c.1883G>T	p.Gly628Val	p.G628V	ENST00000373344	NM_000489.3	628	gGa/gTa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0059016-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			897	141	395	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419920	152419924	+	missense_variant	Missense_Mutation	ONP	TCTAT	TCTAT	TTCTC			P-0059016-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			763	122	334	0	ENST00000206249.3:c.1608_1611delinsTCTC	p.Tyr537Leu	p.Y537L	ENST00000206249	NM_000125.3	536	cTCTAT/cTTCTC																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115956	8115956	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059244-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	297	597	0	ENST00000346208.3:c.1305del	p.Ser436ProfsTer39	p.S436Pfs*39	ENST00000346208		434	caC/ca																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44820548	44820548	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059244-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			235	173	362	0	ENST00000377967.4:c.245del	p.Ser82PhefsTer2	p.S82Ffs*2	ENST00000377967	NM_021140.2	82	tCt/tt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519976		P-0059257-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			836	99	664	0	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005333	150005333	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059257-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			839	75	595	0	ENST00000253339.5:c.892G>T	p.Glu298Ter	p.E298*	ENST00000253339		298	Gag/Tag																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998189	169998189	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0059257-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			514	51	368	0	ENST00000295797.4:c.880G>A	p.Glu294Lys	p.E294K	ENST00000295797	NM_002740.5	294	Gag/Aag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434411	110434411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059257-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			684	58	665	0	ENST00000375856.3:c.3990G>T	p.Leu1330Phe	p.L1330F	ENST00000375856	NM_003749.2	1330	ttG/ttT																																																																															
EP300	2033	MSKCC	GRCh37	22	41553350	41553350	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0059257-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			757	51	457	0	ENST00000263253.7:c.3439G>T	p.Glu1147Ter	p.E1147*	ENST00000263253	NM_001429.3	1147	Gag/Tag																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505301	186505301	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059257-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			592	54	419	0	ENST00000323963.5:c.927G>C	p.Gln309His	p.Q309H	ENST00000323963		309	caG/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0059287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			656	436	689	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0059287-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			578	417	599	0	ENST00000269305.4:c.672+1G>C		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
SMAD2	4087	MSKCC	GRCh37	18	45395736	45395736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	56	516	0	ENST00000262160.6:c.398G>A	p.Arg133His	p.R133H	ENST00000262160	NM_005901.5	133	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs985033810		P-0059291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	51	524	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0059291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	98	535	1	ENST00000257430.4:c.4473del	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0059291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	31	307	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729721	41729721	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			308	47	657	1	ENST00000242208.4:c.808A>G	p.Lys270Glu	p.K270E	ENST00000242208	NM_002192.2	270	Aaa/Gaa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509200	106509200	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	50	622	0	ENST00000359195.3:c.1194A>T	p.Arg398Ser	p.R398S	ENST00000359195	NM_002649.2	398	agA/agT																																																																															
NBN	4683	MSKCC	GRCh37	8	90995006	90995006	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0059291-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	31	318	0	ENST00000265433.3:c.115C>T	p.Gln39Ter	p.Q39*	ENST00000265433	NM_002485.4	39	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0059292-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			91	160	770	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0059292-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	109	731	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175261	112175261	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059292-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	121	609	0	ENST00000257430.4:c.3971del	p.Pro1324GlnfsTer91	p.P1324Qfs*91	ENST00000257430	NM_000038.5	1324	Cca/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0059292-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	54	391	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216382	36216383	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0059292-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			215	115	770	0	ENST00000222270.7:c.3648_3649dup	p.Phe1217CysfsTer139	p.F1217Cfs*139	ENST00000222270	NM_014727.1	1215	-/GT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223506	36223506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059292-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	27	876	0	ENST00000222270.7:c.6056G>T	p.Gly2019Val	p.G2019V	ENST00000222270	NM_014727.1	2019	gGc/gTc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277844	41277844	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0059292-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	82	560	0	ENST00000349496.5:c.1808T>G	p.Leu603Arg	p.L603R	ENST00000349496	NM_001904.3	603	cTt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0059439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			94	48	616	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059439-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			101	46	287	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
JUN	3725	MSKCC	GRCh37	1	59248208	59248208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			644	423	623	0	ENST00000371222.2:c.535G>T	p.Gly179Cys	p.G179C	ENST00000371222	NM_002228.3	179	Ggc/Tgc																																																																															
RB1	5925	MSKCC	GRCh37	13	48954351	48954351	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0059444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	231	267	0	ENST00000267163.4:c.1472T>G	p.Leu491Arg	p.L491R	ENST00000267163	NM_000321.2	491	cTt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577095	7577096	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0059444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	433	570	0	ENST00000269305.4:c.842_843del	p.Asp281AlafsTer24	p.D281Afs*24	ENST00000269305	NM_001126112.2	281	gAC/g																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075122	16075122	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	266	398	0	ENST00000268712.3:c.430A>G	p.Lys144Glu	p.K144E	ENST00000268712	NM_006311.3	144	Aag/Gag																																																																															
NF1	4763	MSKCC	GRCh37	17	29562746	29562746	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs199474742		P-0059444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	306	437	0	ENST00000358273.4:c.3826C>G	p.Arg1276Gly	p.R1276G	ENST00000358273	NM_001042492.2	1276	Cga/Gga																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467140	25467140	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1472	402	652	0	ENST00000264709.3:c.1735G>C	p.Asp579His	p.D579H	ENST00000264709	NM_175629.2	579	Gac/Cac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178947085	178947085	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	220	399	0	ENST00000263967.3:c.2521A>G	p.Ile841Val	p.I841V	ENST00000263967	NM_006218.2	841	Atc/Gtc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139758	55139767	+	frameshift_variant	Frame_Shift_Del	DEL	CACGGAGATC	CACGGAGATC	-			P-0059444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			3834	332	476	0	ENST00000257290.5:c.1422_1431del	p.Glu475ProfsTer11	p.E475Pfs*11	ENST00000257290	NM_006206.4	473	atCACGGAGATC/at																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31238951	31238951	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059444-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	132	369	0	ENST00000376228.5:c.518C>A	p.Ala173Glu	p.A173E	ENST00000376228	NM_002117.5	173	gCg/gAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	344	577	2	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			225	643	575	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
JAK1	3716	MSKCC	GRCh37	1	65323437	65323437	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1240783724		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	280	590	0	ENST00000342505.4:c.1360C>T	p.Arg454Trp	p.R454W	ENST00000342505	NM_002227.2	454	Cgg/Tgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954272	32954273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs886038189		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	159	208	0	ENST00000380152.3:c.9253dup	p.Thr3085AsnfsTer26	p.T3085Nfs*26	ENST00000380152		3082	-/A																																																																															
BTK	695	MSKCC	GRCh37	X	100611219	100611219	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781792640		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			68	179	201	0	ENST00000308731.7:c.1387G>A	p.Val463Ile	p.V463I	ENST00000308731	NM_000061.2	463	Gtc/Atc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			652	351	709	2	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11217302	11217302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	296	466	0	ENST00000361445.4:c.4376C>T	p.Ala1459Val	p.A1459V	ENST00000361445	NM_004958.3	1459	gCc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	35	97	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	350	700	26	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																															
APC	324	MSKCC	GRCh37	5	112111408	112111411	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	78	44	0	ENST00000257430.4:c.509_512del	p.Asp170ValfsTer4	p.D170Vfs*4	ENST00000257430	NM_000038.5	169	ATAGat/at																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	203	402	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	276	532	2	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524624	103524624	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377353991		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	241	348	0	ENST00000355739.4:c.2755C>T	p.Arg919Trp	p.R919W	ENST00000355739	NM_000123.3	919	Cgg/Tgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166770	32166770	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs947409717		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			468	304	530	0	ENST00000375023.3:c.4468C>T	p.Arg1490Trp	p.R1490W	ENST00000375023	NM_004557.3	1490	Cgg/Tgg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508725	106508725	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			497	287	587	1	ENST00000359195.3:c.723del	p.Gly242AlafsTer17	p.G242Afs*17	ENST00000359195	NM_002649.2	240	aCc/ac																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937878	36937878	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3918018		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	342	697	0	ENST00000361632.4:c.958G>A	p.Asp320Asn	p.D320N	ENST00000361632		320	Gac/Aac																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98238417	98238417	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137903539		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	287	520	0	ENST00000331920.6:c.1627C>T	p.Arg543Cys	p.R543C	ENST00000331920	NM_000264.3	543	Cgc/Tgc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856209	111856209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	286	529	1	ENST00000341259.2:c.260G>A	p.Arg87His	p.R87H	ENST00000341259	NM_005475.2	87	cGc/cAc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1962801	1962801	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772470710		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	316	500	0	ENST00000382891.5:c.3295G>A	p.Glu1099Lys	p.E1099K	ENST00000382891	NM_133335.3	1099	Gag/Aag																																																																															
ATR	545	MSKCC	GRCh37	3	142176504	142176504	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1196005889		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	213	279	0	ENST00000350721.4:c.7597C>T	p.Arg2533Ter	p.R2533*	ENST00000350721	NM_001184.3	2533	Cga/Tga																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	372	730	1	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30132999	30132999	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749612527		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	226	465	0	ENST00000331968.5:c.602G>A	p.Arg201Gln	p.R201Q	ENST00000331968	NM_002742.2	201	cGg/cAg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133538	55133538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770343276		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	258	505	2	ENST00000257290.5:c.842C>T	p.Thr281Met	p.T281M	ENST00000257290	NM_006206.4	281	aCg/aTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42795734	42795734	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	369	655	0	ENST00000575354.2:c.2726del	p.Pro909ArgfsTer15	p.P909Rfs*15	ENST00000575354	NM_015125.3	908	gCc/gc																																																																															
EP300	2033	MSKCC	GRCh37	22	41574619	41574620	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	354	670	0	ENST00000263253.7:c.6910_6911del	p.Ser2304GlnfsTer74	p.S2304Qfs*74	ENST00000263253	NM_001429.3	2302	TCt/t																																																																															
BRAF	673	MSKCC	GRCh37	7	140624404	140624409	+	inframe_deletion	In_Frame_Del	DEL	CGGCGC	CGGCGC	-	rs397507459		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	155	408	0	ENST00000288602.6:c.95_100del	p.Gly32_Ala33del	p.G32_A33del	ENST00000288602	NM_004333.4	32	gGCGCCGcg/gcg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395793	45395793	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1404495202		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	219	340	1	ENST00000262160.6:c.341G>A	p.Arg114His	p.R114H	ENST00000262160	NM_005901.5	114	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112174424	112174424	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	227	316	0	ENST00000257430.4:c.3133C>T	p.Gln1045Ter	p.Q1045*	ENST00000257430	NM_000038.5	1045	Cag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040627	47040627	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			57	301	189	0	ENST00000329236.7:c.1028G>T	p.Gly343Val	p.G343V	ENST00000329236	NM_001204466.1	343	gGg/gTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905567	50905567	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760077781		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	406	772	1	ENST00000440232.2:c.695G>A	p.Arg232His	p.R232H	ENST00000440232	NM_002691.3	232	cGt/cAt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137065	64137065	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767134558		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	297	528	0	ENST00000334205.4:c.1576G>A	p.Val526Met	p.V526M	ENST00000334205	NM_003942.2	526	Gtg/Atg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110129	8110129	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746973523		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	298	548	0	ENST00000585124.1:c.476G>A	p.Arg159His	p.R159H	ENST00000585124	NM_004217.3	159	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5273533	5273533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			445	264	541	0	ENST00000357368.4:c.299G>A	p.Arg100Gln	p.R100Q	ENST00000357368	NM_002850.3	100	cGg/cAg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849884	156849884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770727871		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	259	511	0	ENST00000524377.1:c.2140G>A	p.Gly714Ser	p.G714S	ENST00000524377	NM_002529.3	714	Ggc/Agc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911249	29911249	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs199474560		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	242	368	0	ENST00000376809.5:c.548A>G	p.Tyr183Cys	p.Y183C	ENST00000376809	NM_002116.7	183	tAc/tGc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775630	9775630	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	306	515	0	ENST00000377346.4:c.173T>C	p.Leu58Pro	p.L58P	ENST00000377346	NM_005026.3	58	cTc/cCc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78444621	78444621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	407	602	0	ENST00000370768.2:c.68G>A	p.Gly23Asp	p.G23D	ENST00000370768	NM_003902.3	23	gGt/gAt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983052	201983052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			540	346	592	0	ENST00000359651.3:c.901G>T	p.Gly301Cys	p.G301C	ENST00000359651		301	Ggc/Tgc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851423	63851423	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	317	500	1	ENST00000279873.7:c.2201A>C	p.Gln734Pro	p.Q734P	ENST00000279873	NM_032199.2	734	cAg/cCg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180552	94180552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	244	361	0	ENST00000323929.3:c.1616C>T	p.Ala539Val	p.A539V	ENST00000323929	NM_005591.3	539	gCc/gTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344442	118344442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	353	539	0	ENST00000534358.1:c.2568G>T	p.Glu856Asp	p.E856D	ENST00000534358	NM_005933.3	856	gaG/gaT																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240035	41240035	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	78	211	0	ENST00000379561.5:c.315del	p.Leu106CysfsTer227	p.L106Cfs*227	ENST00000379561	NM_002015.3	105	ggG/gg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117674	70117674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			546	388	681	1	ENST00000245479.2:c.142C>T	p.Pro48Ser	p.P48S	ENST00000245479	NM_000346.3	48	Ccc/Tcc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302923	15302923	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			520	334	640	0	ENST00000263388.2:c.527A>G	p.Asn176Ser	p.N176S	ENST00000263388	NM_000435.2	176	aAc/aGc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955119	17955119	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	301	593	0	ENST00000458235.1:c.108del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	36	ggG/gg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216708	36216708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	302	560	0	ENST00000222270.7:c.3874C>T	p.Arg1292Trp	p.R1292W	ENST00000222270	NM_014727.1	1292	Cgg/Tgg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422684	47422684	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1298488368		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	252	415	0	ENST00000404338.3:c.752G>A	p.Arg251Gln	p.R251Q	ENST00000404338	NM_004491.4	251	cGg/cAg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47690201	47690201	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	188	119	0	ENST00000233146.2:c.1418C>A	p.Ser473Ter	p.S473*	ENST00000233146	NM_000251.2	473	tCa/tAa																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62321687	62321687	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369014080		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	303	549	0	ENST00000508582.2:c.2378G>A	p.Arg793His	p.R793H	ENST00000508582		793	cGt/cAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	482	384	15	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55138592	55138592	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	92	413	0	ENST00000257290.5:c.1269T>A	p.Asp423Glu	p.D423E	ENST00000257290	NM_006206.4	423	gaT/gaA																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527692	157527692	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	281	527	0	ENST00000346085.5:c.5417T>C	p.Leu1806Ser	p.L1806S	ENST00000346085	NM_020732.3	1806	tTg/tCg																																																																															
TEK	7010	MSKCC	GRCh37	9	27213563	27213563	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059448-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	210	322	0	ENST00000380036.4:c.2959C>T	p.Arg987Ter	p.R987*	ENST00000380036	NM_000459.3	987	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717699	89717709	+	frameshift_variant	Frame_Shift_Del	DEL	GAGTTCCCTCA	GAGTTCCCTCA	-			P-0059457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	227	377	0	ENST00000371953.3:c.725_735del	p.Glu242AlafsTer7	p.E242Afs*7	ENST00000371953	NM_000314.4	242	GAGTTCCCTCAg/g																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437698	49437698	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	666	700	0	ENST00000301067.7:c.5272G>C	p.Gly1758Arg	p.G1758R	ENST00000301067	NM_003482.3	1758	Ggg/Cgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845839	72845839	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0059457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	331	639	0	ENST00000268489.5:c.3628C>T	p.Arg1210Ter	p.R1210*	ENST00000268489	NM_006885.3	1210	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0059457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			459	290	517	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0059457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			657	405	674	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39584497	39584497	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			692	308	520	0	ENST00000262039.4:c.1162G>T	p.Asp388Tyr	p.D388Y	ENST00000262039	NM_002647.2	388	Gat/Tat																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612270	1612270	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	304	608	0	ENST00000344749.5:c.1749G>T	p.Gln583His	p.Q583H	ENST00000344749	NM_001136139.2	583	caG/caT																																																																															
EP300	2033	MSKCC	GRCh37	22	41568504	41568504	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0059457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			76	112	301	0	ENST00000263253.7:c.4454A>T	p.Asp1485Val	p.D1485V	ENST00000263253	NM_001429.3	1485	gAt/gTt																																																																															
KIT	3815	MSKCC	GRCh37	4	55602664	55602664	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C	rs1057519713		P-0059457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	211	355	0	ENST00000288135.5:c.2485G>C	p.Ala829Pro	p.A829P	ENST00000288135	NM_000222.2	829	Gct/Cct																																																																															
STK19	8859	MSKCC	GRCh37	6	31940403	31940404	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0059457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			777	462	639	0	ENST00000375331.2:c.443_444del	p.Ala148GlyfsTer15	p.A148Gfs*15	ENST00000375331	NM_004197.1	146	GCg/g																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29207710	29207710	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	625	595	0	ENST00000240100.2:c.86G>C	p.Gly29Ala	p.G29A	ENST00000240100	NM_001394.6	29	gGc/gCc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69028022	69028022	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0059457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			82	46	376	0	ENST00000288368.4:c.3181G>T	p.Glu1061Ter	p.E1061*	ENST00000288368	NM_024870.2	1061	Gaa/Taa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974721	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			312	1397	694	0	ENST00000304494.5:c.106del	p.Ala36ArgfsTer17	p.A36Rfs*17	ENST00000304494	NM_000077.4	36	Gcg/cg																																																																															
AR	367	MSKCC	GRCh37	X	66765932	66765932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059457-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	135	345	0	ENST00000374690.3:c.944G>T	p.Gly315Val	p.G315V	ENST00000374690	NM_000044.3	315	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0059460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			469	95	520	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0059460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	90	369	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
KDR	3791	MSKCC	GRCh37	4	55958789	55958789	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0059460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	87	347	0	ENST00000263923.4:c.3064C>T	p.Arg1022Ter	p.R1022*	ENST00000263923	NM_002253.2	1022	Cga/Tga																																																																															
ABL1	25	MSKCC	GRCh37	9	133759863	133759863	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768245401		P-0059460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			624	125	562	1	ENST00000318560.5:c.2186C>T	p.Thr729Met	p.T729M	ENST00000318560	NM_005157.4	729	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	74	317	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TET1	80312	MSKCC	GRCh37	10	70446164	70446164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	96	463	0	ENST00000373644.4:c.5104G>T	p.Asp1702Tyr	p.D1702Y	ENST00000373644	NM_030625.2	1702	Gat/Tat																																																																															
CCND2	894	MSKCC	GRCh37	12	4388038	4388038	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	105	550	0	ENST00000261254.3:c.524C>A	p.Ser175Tyr	p.S175Y	ENST00000261254	NM_001759.3	175	tCt/tAt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117908	70117908	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	143	649	0	ENST00000245479.2:c.376C>T	p.Gln126Ter	p.Q126*	ENST00000245479	NM_000346.3	126	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117919	70117934	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGCACAACGCCGAG	CTTGCACAACGCCGAG	-			P-0059460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	126	650	0	ENST00000245479.2:c.389_404del	p.Leu130SerfsTer12	p.L130Sfs*12	ENST00000245479	NM_000346.3	129	caCTTGCACAACGCCGAG/ca																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591854	48591854	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	120	542	0	ENST00000342988.3:c.1017T>A	p.Phe339Leu	p.F339L	ENST00000342988	NM_005359.5	339	ttT/ttA																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979240	93979240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	79	521	0	ENST00000369303.4:c.1588C>T	p.Leu530Phe	p.L530F	ENST00000369303	NM_004440.3	530	Ctt/Ttt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44879904	44879904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	85	180	0	ENST00000377967.4:c.493C>G	p.Arg165Gly	p.R165G	ENST00000377967	NM_021140.2	165	Cga/Gga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528073	157528094	+	protein_altering_variant	In_Frame_Del	DEL	CCATCGCGCACTGGCAGGACTC	CCATCGCGCACTGGCAGGACTC	A			P-0059460-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			596	126	678	0	ENST00000346085.5:c.5798_5819delinsA	p.Thr1933_Ser1940delinsLys	p.T1933_S1940delinsK	ENST00000346085	NM_020732.3	1933	aCCATCGCGCACTGGCAGGACTCg/aAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931589		P-0059461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	94	386	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																															
APC	324	MSKCC	GRCh37	5	112173926	112173926	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1060503287		P-0059461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	390	393	0	ENST00000257430.4:c.2635C>T	p.Gln879Ter	p.Q879*	ENST00000257430	NM_000038.5	879	Cag/Tag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933574	39933574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			649	118	303	0	ENST00000378444.4:c.1025G>A	p.Arg342Gln	p.R342Q	ENST00000378444	NM_001123385.1	342	cGa/cAa																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170013720	170013720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	132	210	9	ENST00000295797.4:c.1439G>A	p.Arg480His	p.R480H	ENST00000295797	NM_002740.5	480	cGc/cAc																																																																															
AC008738.1	0	MSKCC	GRCh37	19	33792754	33792755	+	splice_acceptor_variant,non_coding_transcript_variant	Splice_Site	INS	-	-	GGC	rs896645324		P-0059461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	118	379	0	ENST00000425420.2:n.247-4_247-2dup		p.X83_splice	ENST00000425420		83																																																																																
TP53	7157	MSKCC	GRCh37	17	7577561	7577568	+	frameshift_variant	Frame_Shift_Del	DEL	ACTGTTAC	ACTGTTAC	-			P-0059461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	189	374	0	ENST00000269305.4:c.713_720del	p.Cys238PhefsTer23	p.C238Ffs*23	ENST00000269305	NM_001126112.2	238	tGTAACAGT/t																																																																															
ROS1	6098	MSKCC	GRCh37	6	117658439	117658439	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	43	331	0	ENST00000368508.3:c.5144A>T	p.Asn1715Ile	p.N1715I	ENST00000368508	NM_002944.2	1715	aAt/aTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610310	10610315	+	stop_gained	Nonsense_Mutation	ONP	CCATGA	CCATGA	AAATGC			P-0059461-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	83	539	0	ENST00000171111.5:c.395_400delinsGCATTT	p.Val132_Glu134delinsGlyIleTer	p.V132_E134delinsGI*	ENST00000171111	NM_203500.1	132	gTCATGGag/gGCATTTag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0059464-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			409	52	484	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0059464-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			343	48	412	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913399		P-0059464-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			443	48	547	0	ENST00000349496.5:c.100G>C	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Cga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059464-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			439	27	584	0	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971169	21971176	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCAGCT	CAGCAGCT	-			P-0059464-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			390	31	669	0	ENST00000304494.5:c.182_189del	p.Glu61AlafsTer56	p.E61Afs*56	ENST00000304494	NM_000077.4	61	gAGCTGCTG/g																																																																															
STK11	6794	MSKCC	GRCh37	19	1220444	1220444	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	144	751	0	ENST00000326873.7:c.540del	p.Asn181ThrfsTer106	p.N181Tfs*106	ENST00000326873	NM_000455.4	179	ccG/cc																																																																															
ATM	472	MSKCC	GRCh37	11	108236085	108236085	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			534	160	639	0	ENST00000278616.4:c.9021A>T	p.Glu3007Asp	p.E3007D	ENST00000278616	NM_000051.3	3007	gaA/gaT																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1962781	1962781	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	134	587	0	ENST00000382891.5:c.3275A>G	p.Tyr1092Cys	p.Y1092C	ENST00000382891	NM_133335.3	1092	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	89	324	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ATM	472	MSKCC	GRCh37	11	108172517	108172517	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs876660175		P-0059502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	67	348	0	ENST00000278616.4:c.5319+1G>T		p.X1773_splice	ENST00000278616	NM_000051.3	1773																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	10031919	10031920	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0059502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	121	658	2	ENST00000330684.3:c.903_904delinsTT	p.Ala302Ser	p.A302S	ENST00000330684	NM_001134407.1	301	acCGct/acTTct																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839802	27839802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059502-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			638	100	918	0	ENST00000328488.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000328488	NM_003533.2	98	Gag/Aag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0059505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	578	697	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164543	36164543	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	168	868	0	ENST00000300305.3:c.1332del	p.Ser445AlafsTer149	p.S445Afs*149	ENST00000300305		444	ccC/cc																																																																															
CDH1	999	MSKCC	GRCh37	16	68862208	68862208	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0059505-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	184	636	0	ENST00000261769.5:c.2295+1G>T		p.X765_splice	ENST00000261769	NM_004360.3	765																																																																																
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0059511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			765	128	698	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0059511-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	40	348	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0052857-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			567	153	419	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024197	31024197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052857-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			690	57	517	0	ENST00000375687.4:c.3682G>A	p.Glu1228Lys	p.E1228K	ENST00000375687	NM_015338.5	1228	Gaa/Aaa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880219	37880220	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC	rs121913469		P-0052857-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			659	256	493	0	ENST00000269571.5:c.2263_2264delinsCC	p.Leu755Pro	p.L755P	ENST00000269571		755	TTg/CCg																																																																															
ALK	238	MSKCC	GRCh37	2	29474026	29474026	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147858673		P-0052857-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			788	44	525	0	ENST00000389048.3:c.2149G>A	p.Glu717Lys	p.E717K	ENST00000389048	NM_004304.4	717	Gag/Aag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939507	71939507	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373971775		P-0052857-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			940	119	661	0	ENST00000298229.2:c.362G>A	p.Arg121Gln	p.R121Q	ENST00000298229	NM_001567.3	121	cGa/cAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183258	56183258	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0052857-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			749	65	413	0	ENST00000399503.3:c.4168G>T	p.Gly1390Ter	p.G1390*	ENST00000399503	NM_005921.1	1390	Gga/Tga																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31508799	31508799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052857-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			660	123	397	0	ENST00000344624.3:c.1516G>A	p.Ala506Thr	p.A506T	ENST00000344624		506	Gca/Aca																																																																															
ALK	238	MSKCC	GRCh37	2	29443583	29443583	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052857-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			692	99	446	0	ENST00000389048.3:c.3634C>G	p.Arg1212Gly	p.R1212G	ENST00000389048	NM_004304.4	1212	Cgc/Ggc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099884	27099884	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052857-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			727	86	572	0	ENST00000324856.7:c.3763G>T	p.Gly1255Trp	p.G1255W	ENST00000324856	NM_006015.4	1255	Ggg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099869	27099869	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052857-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			676	90	530	0	ENST00000324856.7:c.3748C>T	p.Gln1250Ter	p.Q1250*	ENST00000324856	NM_006015.4	1250	Cag/Tag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740174	162740174	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052857-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			766	69	519	1	ENST00000367921.3:c.1376C>A	p.Ser459Tyr	p.S459Y	ENST00000367921	NM_006182.2	459	tCc/tAc																																																																															
BLM	641	MSKCC	GRCh37	15	91298117	91298117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052857-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			433	62	357	0	ENST00000355112.3:c.1036G>A	p.Glu346Lys	p.E346K	ENST00000355112	NM_000057.2	346	Gag/Aag																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170009677	170009677	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052857-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			262	37	264	0	ENST00000295797.4:c.1239C>G	p.Phe413Leu	p.F413L	ENST00000295797	NM_002740.5	413	ttC/ttG																																																																															
PARK2	5071	MSKCC	GRCh37	6	162475199	162475199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052857-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			503	55	376	0	ENST00000366898.1:c.542C>T	p.Ser181Phe	p.S181F	ENST00000366898	NM_004562.2	181	tCt/tTt																																																																															
PMS2	5395	MSKCC	GRCh37	7	6048521	6048702	+	splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	CCACGCGCCTCGGCCATGTTCCCCCCATTTCCAGGGAGGTTGGAATGCCGTGGGTCTCAAAGAGGGCGCGCGAGAGGGGACACCGGAAGACTGCGAGCCCCGCTCACCTCGAGCTCTCAGCTCGCTCCATGGATGCAACACCCGATCCGCCTCGGGGACTGGGAAAGTTCCCTCCAGGGCTC	CCACGCGCCTCGGCCATGTTCCCCCCATTTCCAGGGAGGTTGGAATGCCGTGGGTCTCAAAGAGGGCGCGCGAGAGGGGACACCGGAAGACTGCGAGCCCCGCTCACCTCGAGCTCTCAGCTCGCTCCATGGATGCAACACCCGATCCGCCTCGGGGACTGGGAAAGTTCCCTCCAGGGCTC	-			P-0052857-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			1190	174	570	0	ENST00000265849.7:c.-52_23+107del		p.X18_splice	ENST00000265849	NM_000535.5	18																																																																																
BRAF	673	MSKCC	GRCh37	7	140482925	140482925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052857-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			681	129	549	1	ENST00000288602.6:c.1210G>A	p.Ala404Thr	p.A404T	ENST00000288602	NM_004333.4	404	Gcc/Acc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504380	8504380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052857-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			612	39	374	0	ENST00000356435.5:c.1703C>T	p.Thr568Ile	p.T568I	ENST00000356435		568	aCa/aTa																																																																															
ATRX	546	MSKCC	GRCh37	X	76829769	76829782	+	frameshift_variant	Frame_Shift_Del	DEL	GTAGTGGAACCATC	GTAGTGGAACCATC	A			P-0052857-T05-IM7									Unknown	SOMATIC				MSK-IMPACT			120	55	188	0	ENST00000373344.5:c.6259_6272delinsT	p.Asp2087LeufsTer18	p.D2087Lfs*18	ENST00000373344	NM_000489.3	2087	GATGGTTCCACTACt/Tt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579348	7579349	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0059361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	162	660	0	ENST00000269305.4:c.338_339insAT	p.Phe113LeufsTer11	p.F113Lfs*11	ENST00000269305	NM_001126112.2	113	ttc/ttATc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460516	8460516	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748838568		P-0059361-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	134	552	0	ENST00000356435.5:c.3770C>T	p.Pro1257Leu	p.P1257L	ENST00000356435		1257	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380269	25380270	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCCTCTTGACCTGCTGTGTCGAGAATA			P-0059443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	41	451	0	ENST00000256078.4:c.162_188dup	p.Asp54_Glu62dup	p.D54_E62dup	ENST00000256078	NM_033360.2	54	gag/gaTATTCTCGACACAGCAGGTCAAGAGGAg																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33690426	33690426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	84	647	0	ENST00000394566.1:c.401G>A	p.Arg134His	p.R134H	ENST00000394566	NM_001104587.1	134	cGt/cAt																																																																															
GNA11	2767	MSKCC	GRCh37	19	3094783	3094783	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0059443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	49	716	0	ENST00000078429.4:c.134T>C	p.Leu45Pro	p.L45P	ENST00000078429	NM_002067.2	45	cTc/cCc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222819	53222819	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0059443-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			165	39	651	0	ENST00000375401.3:c.4118-1G>T		p.X1373_splice	ENST00000375401	NM_004187.3	1373																																																																																
TNFRSF14	8764	MSKCC	GRCh37	1	2491283	2491283	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041155-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			568	309	616	0	ENST00000355716.4:c.326G>C	p.Arg109Pro	p.R109P	ENST00000355716	NM_003820.2	109	cGg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579325	7579326	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0041155-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			269	652	532	0	ENST00000269305.4:c.360_361dup	p.Ser121CysfsTer3	p.S121Cfs*3	ENST00000269305	NM_001126112.2	121	tct/tGTct																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216336	2216336	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041155-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			541	151	577	0	ENST00000398665.3:c.1980G>C	p.Lys660Asn	p.K660N	ENST00000398665	NM_032482.2	660	aaG/aaC																																																																															
KIT	3815	MSKCC	GRCh37	4	55593669	55593669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041155-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1533	161	379	0	ENST00000288135.5:c.1735G>A	p.Asp579Asn	p.D579N	ENST00000288135	NM_000222.2	579	Gat/Aat																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374979	45374980	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	TAC			P-0059318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			121	10	493	0	ENST00000262160.6:c.863_864insGTA	p.Glu288_Thr289insTer	p.E288_T289ins*	ENST00000262160	NM_005901.5	288	gaa/gaGTAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221642	36221642	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1471498012		P-0059318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	31	640	0	ENST00000222270.7:c.5311C>T	p.Arg1771Trp	p.R1771W	ENST00000222270	NM_014727.1	1771	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16203122	16203122	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	24	592	0	ENST00000375759.3:c.830G>T	p.Arg277Ile	p.R277I	ENST00000375759	NM_015001.2	277	aGa/aTa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115815	8115853	+	inframe_deletion	In_Frame_Del	DEL	GAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACAT	GAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACAT	-			P-0059318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	27	550	0	ENST00000346208.3:c.1162_1200del	p.Asn388_Met400del	p.N388_M400del	ENST00000346208		387	aaGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATg/aag																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589615	69589615	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	35	1090	0	ENST00000168712.1:c.238A>G	p.Ile80Val	p.I80V	ENST00000168712	NM_002007.2	80	Atc/Gtc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131923662	131923662	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0059318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	11	438	0	ENST00000265335.6:c.932A>C	p.His311Pro	p.H311P	ENST00000265335		311	cAc/cCc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176722156	176722156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059318-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	15	761	0	ENST00000439151.2:c.7787G>A	p.Ser2596Asn	p.S2596N	ENST00000439151	NM_022455.4	2596	aGt/aAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876659802		P-0059320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			804	112	503	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47679240	47679240	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059320-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			626	73	359	0	ENST00000347630.2:c.967del	p.Asp323IlefsTer49	p.D323Ifs*49	ENST00000347630	NM_001007230.1	323	Gat/at																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0059321-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	299	409	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55228007	55228007	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0059321-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			786	449	424	1	ENST00000275493.2:c.1474A>C	p.Ser492Arg	p.S492R	ENST00000275493	NM_005228.3	492	Agc/Cgc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549395	21549395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143631255		P-0059321-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			499	569	646	0	ENST00000382592.4:c.2881C>T	p.Arg961Trp	p.R961W	ENST00000382592	NM_014572.2	961	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579433	7579433	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1064793279		P-0059321-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	733	732	1	ENST00000269305.4:c.254del	p.Pro85LeufsTer38	p.P85Lfs*38	ENST00000269305	NM_001126112.2	85	cCt/ct																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982392	201982392	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0059321-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1186	357	680	0	ENST00000359651.3:c.771C>G	p.Tyr257Ter	p.Y257*	ENST00000359651		257	taC/taG																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827439	72827439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059321-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	407	571	0	ENST00000268489.5:c.9142C>T	p.His3048Tyr	p.H3048Y	ENST00000268489	NM_006885.3	3048	Cat/Tat																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533606	63533606	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059321-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			722	378	710	0	ENST00000307078.5:c.1548C>G	p.His516Gln	p.H516Q	ENST00000307078	NM_004655.3	516	caC/caG																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15284912	15284912	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059321-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			811	50	582	0	ENST00000263388.2:c.4703G>T	p.Arg1568Leu	p.R1568L	ENST00000263388	NM_000435.2	1568	cGg/cTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046357	180046357	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059321-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	44	513	0	ENST00000261937.6:c.2657C>A	p.Thr886Lys	p.T886K	ENST00000261937	NM_182925.4	886	aCg/aAg																																																																															
AR	367	MSKCC	GRCh37	X	66765328	66765328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059321-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	192	338	0	ENST00000374690.3:c.340C>A	p.Gln114Lys	p.Q114K	ENST00000374690	NM_000044.3	114	Cag/Aag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109671	115109672	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0059322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	271	513	0	ENST00000257566.3:c.2205_2206dup	p.Asp736GlyfsTer154	p.D736Gfs*154	ENST00000257566	NM_016569.3	736	gac/gGGac																																																																															
CDH1	999	MSKCC	GRCh37	16	68855998	68856005	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTGAGA	CTGTGAGA	-			P-0059322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	156	561	0	ENST00000261769.5:c.1806_1813del	p.Phe602LeufsTer12	p.F602Lfs*12	ENST00000261769	NM_004360.3	602	ttCTGTGAGAgg/ttgg																																																																															
CASP8	841	MSKCC	GRCh37	2	202149608	202149608	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0059322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	51	560	0	ENST00000358485.4:c.1051del	p.Ile351SerfsTer5	p.I351Sfs*5	ENST00000358485	NM_001080125.1	350	cAa/ca																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968169	68968173	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAG	AAGAG	-			P-0059322-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	122	405	0	ENST00000288368.4:c.1200_1204del	p.Arg401ThrfsTer6	p.R401Tfs*6	ENST00000288368	NM_024870.2	400	AAGAGa/a																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507318	8507318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	170	497	0	ENST00000356435.5:c.1660G>T	p.Gly554Trp	p.G554W	ENST00000356435		554	Ggg/Tgg																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125497533	125497533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	137	395	0	ENST00000428830.2:c.97G>A	p.Glu33Lys	p.E33K	ENST00000428830	NM_001114121.2	33	Gaa/Aaa																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074297	8074297	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			667	94	579	0	ENST00000377482.5:c.362A>G	p.Asn121Ser	p.N121S	ENST00000377482	NM_018948.3	121	aAt/aGt																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150900412	150900412	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	79	534	0	ENST00000271640.5:c.222G>C	p.Glu74Asp	p.E74D	ENST00000271640	NM_001145415.1	74	gaG/gaC																																																																															
FH	2271	MSKCC	GRCh37	1	241675328	241675328	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0059323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	285	385	0	ENST00000366560.3:c.494T>G	p.Leu165Ter	p.L165*	ENST00000366560	NM_000143.3	165	tTa/tGa																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316059	14316059	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	55	196	0	ENST00000256196.4:c.366G>C	p.Met122Ile	p.M122I	ENST00000256196		122	atG/atC																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18439859	18439859	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0059323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	90	353	0	ENST00000266497.5:c.757A>T	p.Lys253Ter	p.K253*	ENST00000266497		253	Aaa/Taa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244605	46244605	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			643	101	544	0	ENST00000334344.6:c.2699C>G	p.Pro900Arg	p.P900R	ENST00000334344	NM_152641.2	900	cCt/cGt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911229	32911230	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACTTGACTTGT			P-0059323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	42	401	0	ENST00000380152.3:c.2738_2748dup	p.Val917ThrfsTer2	p.V917Tfs*2	ENST00000380152		913	gac/gACTTGACTTGTac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913011	32913011	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	97	537	0	ENST00000380152.3:c.4519C>T	p.Gln1507Ter	p.Q1507*	ENST00000380152		1507	Cag/Tag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2107156	2107167	+	inframe_deletion	In_Frame_Del	DEL	CATGTGCCACCT	CATGTGCCACCT	-			P-0059323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	63	553	0	ENST00000219476.3:c.829_840del	p.Cys277_Met280del	p.C277_M280del	ENST00000219476	NM_000548.3	275	aaCATGTGCCACCTc/aac																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2214477	2214477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	139	557	0	ENST00000398665.3:c.1805C>T	p.Ala602Val	p.A602V	ENST00000398665	NM_032482.2	602	gCt/gTt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5211627	5211627	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	135	459	0	ENST00000357368.4:c.5208C>G	p.Ile1736Met	p.I1736M	ENST00000357368	NM_002850.3	1736	atC/atG																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546769	9546769	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			461	215	645	0	ENST00000353224.5:c.1253C>A	p.Ser418Tyr	p.S418Y	ENST00000353224	NM_177990.2	418	tCc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112173687	112173840	+	frameshift_variant	Frame_Shift_Del	DEL	ATGTTTTTGACACCAATCGACATGATGATAATAGGTCAGACAATTTTAATACTGGCAACATGACTGTCCTTTCACCATATTTGAATACTACAGTGTTACCCAGCTCCTCTTCATCAAGAGGAAGCTTAGATAGTTCTCGTTCTGAAAAAGATAG	ATGTTTTTGACACCAATCGACATGATGATAATAGGTCAGACAATTTTAATACTGGCAACATGACTGTCCTTTCACCATATTTGAATACTACAGTGTTACCCAGCTCCTCTTCATCAAGAGGAAGCTTAGATAGTTCTCGTTCTGAAAAAGATAG	-			P-0059323-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			695	76	552	0	ENST00000257430.4:c.2397_2550del	p.Tyr799Ter	p.Y799*	ENST00000257430	NM_000038.5	799	tATGTTTTTGACACCAATCGACATGATGATAATAGGTCAGACAATTTTAATACTGGCAACATGACTGTCCTTTCACCATATTTGAATACTACAGTGTTACCCAGCTCCTCTTCATCAAGAGGAAGCTTAGATAGTTCTCGTTCTGAAAAAGATAGa/ta																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061249	38061249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			143	83	529	0	ENST00000250448.2:c.740A>G	p.His247Arg	p.H247R	ENST00000250448	NM_004496.3	247	cAc/cGc																																																																															
GAB2	9846	MSKCC	GRCh37	11	78128663	78128816	+	splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	CGCCCCTGGGCGGCCGCGCCCGCACTCACATAGCGCCTCAACTTCTTCTCGGGAGGCGATTTCCTCAGCCAGCCGGTGCACACCACGTCGCCGCCGCCGCTCATGCTGCCGGCCTGGAGCCCCCCGCCGGGTCGCGCGGACGAGGGCGCGGGCT	CGCCCCTGGGCGGCCGCGCCCGCACTCACATAGCGCCTCAACTTCTTCTCGGGAGGCGATTTCCTCAGCCAGCCGGTGCACACCACGTCGCCGCCGCCGCTCATGCTGCCGGCCTGGAGCCCCCCGCCGGGTCGCGCGGACGAGGGCGCGGGCT	-			P-0059324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	21	646	0	ENST00000361507.4:c.-50_75+29del		p.X17_splice	ENST00000361507	NM_080491.2	17																																																																																
SETD2	29072	MSKCC	GRCh37	3	47108599	47108599	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			57	31	250	0	ENST00000409792.3:c.6070C>G	p.Arg2024Gly	p.R2024G	ENST00000409792	NM_014159.6	2024	Cga/Gga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125230	47125231	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0059324-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	12	374	1	ENST00000409792.3:c.6039_6040delinsTT	p.Asp2014Tyr	p.D2014Y	ENST00000409792	NM_014159.6	2013	ctGGac/ctTTac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0059357-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	165	682	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70361078	70361107	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGCAGCAGCAGCAACAGCAACAGCAGCAGC	AGCAGCAGCAGCAACAGCAACAGCAGCAGC	-	rs773480549		P-0059357-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			420	26	588	0	ENST00000374080.3:c.6300_6329del		p.X2100_splice	ENST00000374080		2100																																																																																
RB1	5925	MSKCC	GRCh37	13	49050980	49050980	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0059357-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	91	373	0	ENST00000267163.4:c.2663+1G>T		p.X888_splice	ENST00000267163	NM_000321.2	888																																																																																
IL10	3586	MSKCC	GRCh37	1	206944702	206944702	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0059357-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	49	391	0	ENST00000423557.1:c.224A>C	p.Lys75Thr	p.K75T	ENST00000423557	NM_000572.2	75	aAg/aCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440474	49440474	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059357-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	142	610	0	ENST00000301067.7:c.4336G>C	p.Asp1446His	p.D1446H	ENST00000301067	NM_003482.3	1446	Gat/Cat																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472502	88472502	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0059357-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	62	664	0	ENST00000360948.2:c.2053T>G	p.Cys685Gly	p.C685G	ENST00000360948	NM_001012338.2	685	Tgc/Ggc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353731	15353731	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0059357-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	53	437	0	ENST00000263377.2:c.3149A>C	p.Lys1050Thr	p.K1050T	ENST00000263377	NM_058243.2	1050	aAg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0059362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	76	396	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0059362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	28	179	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0059362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	42	366	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
NF2	4771	MSKCC	GRCh37	22	30064376	30064376	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1365006505		P-0059362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	71	308	0	ENST00000338641.4:c.940G>A	p.Asp314Asn	p.D314N	ENST00000338641	NM_000268.3	314	Gat/Aat																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091740	29091740	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200649225		P-0059362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			111	15	101	1	ENST00000328354.6:c.1217G>A	p.Arg406His	p.R406H	ENST00000328354	NM_007194.3	406	cGt/cAt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066760	30066760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	24	318	0	ENST00000331968.5:c.2371G>A	p.Asp791Asn	p.D791N	ENST00000331968	NM_002742.2	791	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0059362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	53	255	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911555	114911555	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	62	326	0	ENST00000543371.1:c.1073T>A	p.Met358Lys	p.M358K	ENST00000543371	NM_001198531.1	358	aTg/aAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212192	36212192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	37	287	0	ENST00000222270.7:c.1943G>A	p.Arg648Gln	p.R648Q	ENST00000222270	NM_014727.1	648	cGg/cAg																																																																															
FANCC	2176	MSKCC	GRCh37	9	97887454	97887454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059362-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	69	329	0	ENST00000289081.3:c.910G>A	p.Glu304Lys	p.E304K	ENST00000289081	NM_000136.2	304	Gaa/Aaa																																																																															
IGF2	3481	MSKCC	GRCh37	11	2156654	2156654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	61	741	0	ENST00000434045.2:c.268G>T	p.Gly90Cys	p.G90C	ENST00000434045	NM_001127598.1	90	Ggc/Tgc																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205157	61205157	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144867876		P-0059363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			433	40	472	0	ENST00000301761.2:c.97C>T	p.Arg33Cys	p.R33C	ENST00000301761	NM_017841.2	33	Cgc/Tgc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246629	46246629	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	72	474	0	ENST00000334344.6:c.4723C>T	p.Gln1575Ter	p.Q1575*	ENST00000334344	NM_152641.2	1575	Cag/Tag																																																																															
RAD51	5888	MSKCC	GRCh37	15	41021734	41021734	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1249471221		P-0059363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	30	475	0	ENST00000267868.3:c.676G>A	p.Ala226Thr	p.A226T	ENST00000267868	NM_002875.4	226	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0059363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	75	731	0	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602341	10602341	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1178941219		P-0059363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			566	77	763	1	ENST00000171111.5:c.1237C>T	p.Arg413Cys	p.R413C	ENST00000171111	NM_203500.1	413	Cgt/Tgt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295801	212295801	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1423325504		P-0059363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	44	468	0	ENST00000342788.4:c.2512C>T	p.Arg838Ter	p.R838*	ENST00000342788	NM_005235.2	838	Cga/Tga																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169988208	169988208	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0059363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	39	380	0	ENST00000295797.4:c.451-1G>A		p.X151_splice	ENST00000295797	NM_002740.5	151																																																																																
PRKCI	5584	MSKCC	GRCh37	3	169988252	169988252	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	34	458	0	ENST00000295797.4:c.494G>C	p.Gly165Ala	p.G165A	ENST00000295797	NM_002740.5	165	gGa/gCa																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504989	186504989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	38	430	0	ENST00000323963.5:c.845C>T	p.Thr282Met	p.T282M	ENST00000323963		282	aCg/aTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231743	66231743	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	16	305	0	ENST00000273854.3:c.1957C>A	p.Pro653Thr	p.P653T	ENST00000273854	NM_004439.5	653	Cca/Aca																																																																															
TERT	7015	MSKCC	GRCh37	5	1279527	1279527	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767382450		P-0059363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	102	557	0	ENST00000310581.5:c.2009C>T	p.Ala670Val	p.A670V	ENST00000310581	NM_198253.2	670	gCg/gTg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31529147	31529147	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0059363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	111	481	0	ENST00000344624.3:c.20G>A	p.Cys7Tyr	p.C7Y	ENST00000344624		7	tGt/tAt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509120	106509120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	35	691	0	ENST00000359195.3:c.1114G>A	p.Val372Ile	p.V372I	ENST00000359195	NM_002649.2	372	Gtc/Atc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141559300	141559300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	53	671	0	ENST00000220592.5:c.1501G>A	p.Val501Met	p.V501M	ENST00000220592	NM_012154.3	501	Gtg/Atg																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841225	15841225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059363-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	54	422	0	ENST00000307771.7:c.1309C>T	p.Arg437Trp	p.R437W	ENST00000307771	NM_005089.3	437	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0059374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	76	465	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0059374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	50	274	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591894	48591941	+	inframe_deletion	In_Frame_Del	DEL	TACGTGGACCCTTCTGGAGGAGATCGCTTTTGTTTGGGTCAACTCTCC	TACGTGGACCCTTCTGGAGGAGATCGCTTTTGTTTGGGTCAACTCTCC	-			P-0059374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	63	561	0	ENST00000342988.3:c.1057_1104del	p.Tyr353_Ser368del	p.Y353_S368del	ENST00000342988	NM_005359.5	353	TACGTGGACCCTTCTGGAGGAGATCGCTTTTGTTTGGGTCAACTCTCC/-																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212578359	212578359	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	55	339	0	ENST00000342788.4:c.898G>C	p.Asp300His	p.D300H	ENST00000342788	NM_005235.2	300	Gat/Cat																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361132	66361132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059374-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	57	465	0	ENST00000273854.3:c.1040C>T	p.Ser347Phe	p.S347F	ENST00000273854	NM_004439.5	347	tCt/tTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0059376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	115	413	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0059376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	237	643	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29556364	29556365	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0059376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	171	485	0	ENST00000358273.4:c.2733dup	p.Gln912SerfsTer7	p.Q912Sfs*7	ENST00000358273	NM_001042492.2	911	ctt/cTtt																																																																															
GAB1	2549	MSKCC	GRCh37	4	144336635	144336635	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	45	344	0	ENST00000262995.4:c.78G>C	p.Trp26Cys	p.W26C	ENST00000262995	NM_207123.2	26	tgG/tgC																																																																															
GAB1	2549	MSKCC	GRCh37	4	144336708	144336708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059376-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	47	352	0	ENST00000262995.4:c.151G>A	p.Asp51Asn	p.D51N	ENST00000262995	NM_207123.2	51	Gat/Aat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0059378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	81	635	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934641	9934641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059378-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	57	525	0	ENST00000330684.3:c.1514C>T	p.Ala505Val	p.A505V	ENST00000330684	NM_001134407.1	505	gCa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0059380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	154	704	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
MGA	23269	MSKCC	GRCh37	15	42041881	42041881	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0059380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	69	572	0	ENST00000219905.7:c.6076G>T	p.Glu2026Ter	p.E2026*	ENST00000219905	NM_001164273.1	2026	Gaa/Taa																																																																															
GAB1	2549	MSKCC	GRCh37	4	144359177	144359177	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059380-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	47	382	0	ENST00000262995.4:c.619A>G	p.Thr207Ala	p.T207A	ENST00000262995	NM_207123.2	207	Acc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0059409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			547	182	503	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0059409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			556	136	607	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	58	309	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112170820	112170821	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0059409-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	105	431	0	ENST00000257430.4:c.1917dup	p.Arg640ThrfsTer11	p.R640Tfs*11	ENST00000257430	NM_000038.5	639	tta/ttAa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0059411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	887	784	2	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	372	868	0	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0059411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	266	360	1	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
MSI1	4440	MSKCC	GRCh37	12	120784056	120784056	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1220	159	831	0	ENST00000257552.2:c.929C>A	p.Thr310Asn	p.T310N	ENST00000257552	NM_002442.3	310	aCc/aAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502194	157502256	+	inframe_deletion	In_Frame_Del	DEL	ACCTCACCTTCATGGAAGAGAGAGGCTCTCCTGTCTCAAGTCTGCCTGCCGTGGGCAAGAAGC	ACCTCACCTTCATGGAAGAGAGAGGCTCTCCTGTCTCAAGTCTGCCTGCCGTGGGCAAGAAGC	-			P-0059411-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			666	143	684	0	ENST00000346085.5:c.3227_3289del	p.Tyr1076_Pro1097delinsSer	p.Y1076_P1097delinsS	ENST00000346085	NM_020732.3	1076	tACCTCACCTTCATGGAAGAGAGAGGCTCTCCTGTCTCAAGTCTGCCTGCCGTGGGCAAGAAGCcc/tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579536	7579536	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	37	895	0	ENST00000269305.4:c.151del	p.Glu51AsnfsTer72	p.E51Nfs*72	ENST00000269305	NM_001126112.2	51	Gaa/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059412-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	81	450	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0059413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	161	460	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0059413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	218	470	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112174106	112174106	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0059413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	118	388	2	ENST00000257430.4:c.2815A>T	p.Lys939Ter	p.K939*	ENST00000257430	NM_000038.5	939	Aag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29557165	29557338	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTATTGTTTTCAAACTTACATTTAATTCGTTTTACTTGATGACTAAAGTATTTAGAATGCCTTCTCTTTTGTCTATATCTGATAATTTTTTTATTGTTTCTATGTCTATATAGGTATGTTCGTGTGCTTGGGAATATGGTCCATGCAATTCAAATAAAAACGAAACTGTGTCAA	TTATTGTTTTCAAACTTACATTTAATTCGTTTTACTTGATGACTAAAGTATTTAGAATGCCTTCTCTTTTGTCTATATCTGATAATTTTTTTATTGTTTCTATGTCTATATAGGTATGTTCGTGTGCTTGGGAATATGGTCCATGCAATTCAAATAAAAACGAAACTGTGTCAA	-			P-0059413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	81	130	0	ENST00000358273.4:c.2991-110_3054del		p.X997_splice	ENST00000358273	NM_001042492.2	997																																																																																
MST1R	4486	MSKCC	GRCh37	3	49927454	49927454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059413-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	207	500	4	ENST00000296474.3:c.3850G>A	p.Gly1284Ser	p.G1284S	ENST00000296474	NM_002447.2	1284	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0059128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	92	513	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0059128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	99	493	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0059128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	73	539	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178218	56178218	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780012235		P-0059128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	91	576	0	ENST00000399503.3:c.3191G>A	p.Arg1064Lys	p.R1064K	ENST00000399503	NM_005921.1	1064	aGa/aAa																																																																															
APC	324	MSKCC	GRCh37	5	112116538	112116538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs749479682		P-0059128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	56	357	0	ENST00000257430.4:c.583C>T	p.Gln195Ter	p.Q195*	ENST00000257430	NM_000038.5	195	Caa/Taa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354212	15354212	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201423321		P-0059128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	74	600	3	ENST00000263377.2:c.2668G>A	p.Val890Met	p.V890M	ENST00000263377	NM_058243.2	890	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0059128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			157	91	293	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953213	81953213	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	87	553	0	ENST00000359376.3:c.2179C>T	p.Arg727Ter	p.R727*	ENST00000359376	NM_002661.3	727	Cga/Tga																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146186	38146186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059128-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	131	509	0	ENST00000317025.8:c.3320C>T	p.Pro1107Leu	p.P1107L	ENST00000317025	NM_023034.1	1107	cCt/cTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0059183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	62	157	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0059183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			860	123	605	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
RARA	5914	MSKCC	GRCh37	17	38510620	38510620	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			725	99	450	0	ENST00000254066.5:c.874C>G	p.Leu292Val	p.L292V	ENST00000254066	NM_000964.3	292	Ctg/Gtg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980924	40980924	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0059183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			685	104	423	0	ENST00000373198.4:c.1562T>A	p.Ile521Asn	p.I521N	ENST00000373198	NM_133170.3	521	aTc/aAc																																																																															
LYN	4067	MSKCC	GRCh37	8	56912010	56912010	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059183-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			580	54	296	0	ENST00000519728.1:c.1238A>T	p.Glu413Val	p.E413V	ENST00000519728	NM_002350.3	413	gAa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0057059-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			299	23	534	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350618	89350618	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057059-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			174	11	312	0	ENST00000301030.4:c.2332A>G	p.Lys778Glu	p.K778E	ENST00000301030	NM_001256183.1	778	Aag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs786203436		P-0059084-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	218	597	0	ENST00000269305.4:c.487T>G	p.Tyr163Asp	p.Y163D	ENST00000269305	NM_001126112.2	163	Tac/Gac																																																																															
TEK	7010	MSKCC	GRCh37	9	27212816	27212816	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059084-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	122	474	0	ENST00000380036.4:c.2798C>A	p.Ala933Glu	p.A933E	ENST00000380036	NM_000459.3	933	gCg/gAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0059088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	14	249	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420339	49420339	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			716	115	604	0	ENST00000301067.7:c.15410A>G	p.Lys5137Arg	p.K5137R	ENST00000301067	NM_003482.3	5137	aAg/aGg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628950	187628950	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			680	39	552	0	ENST00000441802.2:c.2032G>C	p.Gly678Arg	p.G678R	ENST00000441802	NM_005245.3	678	Ggt/Cgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55210072	55210072	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059088-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	29	294	0	ENST00000275493.2:c.182T>A	p.Val61Asp	p.V61D	ENST00000275493	NM_005228.3	61	gTc/gAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453139	140453139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913375		P-0059153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	94	342	0	ENST00000288602.6:c.1796C>T	p.Thr599Ile	p.T599I	ENST00000288602	NM_004333.4	599	aCa/aTa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753170	42753170	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753965187		P-0059153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			694	111	763	0	ENST00000222329.4:c.1094C>T	p.Ser365Leu	p.S365L	ENST00000222329	NM_006494.2	365	tCg/tTg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753155	42753155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			684	107	760	0	ENST00000222329.4:c.1109C>T	p.Ser370Phe	p.S370F	ENST00000222329	NM_006494.2	370	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0059153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	68	267	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881477	111881477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	134	564	0	ENST00000393256.3:c.155G>A	p.Gly52Glu	p.G52E	ENST00000393256	NM_006538.4	52	gGg/gAg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47059145	47059146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0059153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	127	450	1	ENST00000409792.3:c.7515dup	p.Lys2506Ter	p.K2506*	ENST00000409792	NM_014159.6	2505	-/T																																																																															
MST1	4485	MSKCC	GRCh37	3	49721504	49721504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	90	298	0	ENST00000449682.2:c.2135C>T	p.Ser712Phe	p.S712F	ENST00000449682	NM_020998.3	712	tCt/tTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040802	47040802	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0059153-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	133	304	0	ENST00000329236.7:c.1201+2T>G		p.X401_splice	ENST00000329236	NM_001204466.1	401																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0059159-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	300	449	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69009359	69009359	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755479314		P-0059159-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	62	382	0	ENST00000288368.4:c.2476G>A	p.Asp826Asn	p.D826N	ENST00000288368	NM_024870.2	826	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0059159-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	196	332	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222888	5222888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059159-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	20	625	0	ENST00000357368.4:c.2915C>A	p.Ala972Asp	p.A972D	ENST00000357368	NM_002850.3	972	gCc/gAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591175	67591610	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTGTTCGGCAAAAGAAGTTGAACGAGTGGTTGGGCAATGAAAACACTGAAGAGTAAGTAGTTACTAAAGATGGTGATAGCAGAAGATTTTTCTCATTTTAGGAAAATGCATGACTTGCTTTGTTTTTAGAACAAGTGAGGAATTTTACTGAGTTTGGAACATCTTGTAGGAGAAAATGTATAAACTCAGTGCCATTATCCAGAATTTTAAAAAAAGAAAGCTTAGCTAAGGAGGACTAGGATTTATTTTTACTCATAATGCTGTGAAACAACTCTCTGTGTCCATAATGATGTCCCTGAACATCTGAAAAATCCCAAAATATTTTTGGAACAGTCAGAGAAAAAAT	TATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTGTTCGGCAAAAGAAGTTGAACGAGTGGTTGGGCAATGAAAACACTGAAGAGTAAGTAGTTACTAAAGATGGTGATAGCAGAAGATTTTTCTCATTTTAGGAAAATGCATGACTTGCTTTGTTTTTAGAACAAGTGAGGAATTTTACTGAGTTTGGAACATCTTGTAGGAGAAAATGTATAAACTCAGTGCCATTATCCAGAATTTTAAAAAAAGAAAGCTTAGCTAAGGAGGACTAGGATTTATTTTTACTCATAATGCTGTGAAACAACTCTCTGTGTCCATAATGATGTCCCTGAACATCTGAAAAATCCCAAAATATTTTTGGAACAGTCAGAGAAAAAAT	-			P-0059159-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	52	344	0	ENST00000274335.5:c.1745+23_1814+294del		p.X582_splice	ENST00000274335		582																																																																																
APC	324	MSKCC	GRCh37	5	112175237	112175237	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059159-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	317	435	0	ENST00000257430.4:c.3946del	p.Ala1316LeufsTer5	p.A1316Lfs*5	ENST00000257430	NM_000038.5	1316	Gct/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0059182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	37	772	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0059182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	34	534	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589834	28589834	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201923726		P-0059182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	48	459	0	ENST00000241453.7:c.2546G>A	p.Arg849His	p.R849H	ENST00000241453	NM_004119.2	849	cGt/cAt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473723	67473723	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223740		P-0059182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			155	54	636	0	ENST00000327367.4:c.803G>A	p.Arg268His	p.R268H	ENST00000327367	NM_005902.3	268	cGc/cAc																																																																															
CBL	867	MSKCC	GRCh37	11	119168162	119168162	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763213265		P-0059182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	53	490	0	ENST00000264033.4:c.2222C>T	p.Ala741Val	p.A741V	ENST00000264033	NM_005188.3	741	gCg/gTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120130	70120130	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	43	551	0	ENST00000245479.2:c.1132C>T	p.Gln378Ter	p.Q378*	ENST00000245479	NM_000346.3	378	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			141	36	318	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FH	2271	MSKCC	GRCh37	1	241672076	241672076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			163	23	336	0	ENST00000366560.3:c.565G>T	p.Asp189Tyr	p.D189Y	ENST00000366560	NM_000143.3	189	Gat/Tat																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627331	37627331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059182-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	39	541	0	ENST00000447079.4:c.1246G>A	p.Asp416Asn	p.D416N	ENST00000447079	NM_015083.1	416	Gat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059186-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	84	305	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0059186-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	295	657	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
RRAS	6237	MSKCC	GRCh37	19	50138844	50138844	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059186-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	64	661	0	ENST00000246792.3:c.646G>T	p.Val216Phe	p.V216F	ENST00000246792	NM_006270.3	216	Gtc/Ttc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385257	41385257	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1293875597		P-0059186-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	221	535	0	ENST00000373198.4:c.704C>T	p.Thr235Met	p.T235M	ENST00000373198	NM_133170.3	235	aCg/aTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134898764	134898764	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs185655852		P-0059186-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	51	556	0	ENST00000398015.3:c.1822C>T	p.Arg608Trp	p.R608W	ENST00000398015	NM_004441.4	608	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0059186-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	57	483	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175475	112175476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0059186-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	79	490	0	ENST00000257430.4:c.4188dup	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1395	agt/agTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0059266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	253	358	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0059266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	59	140	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913237		P-0059266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	149	181	0	ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt																																																																															
TET2	54790	MSKCC	GRCh37	4	106196648	106196648	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0059266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	80	299	0	ENST00000380013.4:c.4981T>G	p.Tyr1661Asp	p.Y1661D	ENST00000380013	NM_001127208.2	1661	Tat/Gat																																																																															
APC	324	MSKCC	GRCh37	5	112151291	112151291	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs876660765		P-0059266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			132	46	141	0	ENST00000257430.4:c.933+1G>A		p.X311_splice	ENST00000257430	NM_000038.5	311																																																																																
KDR	3791	MSKCC	GRCh37	4	55976689	55976689	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747477930		P-0059266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	25	212	0	ENST00000263923.4:c.1136C>T	p.Ala379Val	p.A379V	ENST00000263923	NM_002253.2	379	gCg/gTg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121437362	121437362	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059266-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	103	345	0	ENST00000257555.6:c.1700T>A	p.Val567Asp	p.V567D	ENST00000257555		567	gTc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			115	36	149	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MPL	4352	MSKCC	GRCh37	1	43805011	43805011	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0059269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	31	280	0	ENST00000372470.3:c.461G>A	p.Trp154Ter	p.W154*	ENST00000372470	NM_005373.2	154	tGg/tAg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576098	88576098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			201	60	246	0	ENST00000360948.2:c.1575G>T	p.Lys525Asn	p.K525N	ENST00000360948	NM_001012338.2	525	aaG/aaT																																																																															
STK11	6794	MSKCC	GRCh37	19	1207013	1207014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0059269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			136	68	297	0	ENST00000326873.7:c.102dup	p.Ile35HisfsTer128	p.I35Hfs*128	ENST00000326873	NM_000455.4	34	gtc/gtCc																																																																															
ALK	238	MSKCC	GRCh37	2	29451920	29451920	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			182	58	258	0	ENST00000389048.3:c.2645G>C	p.Gly882Ala	p.G882A	ENST00000389048	NM_004304.4	882	gGc/gCc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372028	55372028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	62	385	0	ENST00000297316.4:c.718C>A	p.Pro240Thr	p.P240T	ENST00000297316	NM_022454.3	240	Ccg/Acg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390804	139390804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059269-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	171	487	0	ENST00000277541.6:c.7387G>T	p.Ala2463Ser	p.A2463S	ENST00000277541	NM_017617.3	2463	Gcc/Tcc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163720	32163720	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1253487294		P-0059272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	34	319	0	ENST00000375023.3:c.5506G>A	p.Glu1836Lys	p.E1836K	ENST00000375023	NM_004557.3	1836	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0059272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	64	261	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436088	49436088	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	84	337	0	ENST00000301067.7:c.5893G>T	p.Glu1965Ter	p.E1965*	ENST00000301067	NM_003482.3	1965	Gaa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433896	49433896	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0059272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			586	89	539	0	ENST00000301067.7:c.7657C>T	p.Gln2553Ter	p.Q2553*	ENST00000301067	NM_003482.3	2553	Cag/Tag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435666	18435666	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0059272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	26	232	0	ENST00000266497.5:c.651G>A	p.Trp217Ter	p.W217*	ENST00000266497		217	tgG/tgA																																																																															
MSI2	124540	MSKCC	GRCh37	17	55729496	55729496	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747741239		P-0059272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	88	307	0	ENST00000284073.2:c.764C>T	p.Ala255Val	p.A255V	ENST00000284073	NM_138962.2	255	gCg/gTg																																																																															
MDM4	4194	MSKCC	GRCh37	1	204511914	204511914	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0059272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	19	153	0	ENST00000367182.3:c.514G>A	p.Glu172Lys	p.E172K	ENST00000367182	NM_001278516.1	172	Gaa/Aaa																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200595	67200595	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0059272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	120	381	0	ENST00000312629.5:c.708-2A>T		p.X236_splice	ENST00000312629	NM_003952.2	236																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49433935	49433935	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	88	515	0	ENST00000301067.7:c.7618C>G	p.Gln2540Glu	p.Q2540E	ENST00000301067	NM_003482.3	2540	Cag/Gag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434189	49434189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	92	556	0	ENST00000301067.7:c.7364C>T	p.Ser2455Leu	p.S2455L	ENST00000301067	NM_003482.3	2455	tCa/tTa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492347	56492347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	88	271	0	ENST00000267101.3:c.2680G>T	p.Val894Phe	p.V894F	ENST00000267101	NM_001982.3	894	Gtc/Ttc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3860676	3860676	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			353	33	246	0	ENST00000262367.5:c.903G>C	p.Gln301His	p.Q301H	ENST00000262367	NM_004380.2	301	caG/caC																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15973505	15973505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	25	249	0	ENST00000268712.3:c.4487C>T	p.Ser1496Leu	p.S1496L	ENST00000268712	NM_006311.3	1496	tCa/tTa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25498371	25498371	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0059272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	20	190	0	ENST00000264709.3:c.490G>C	p.Glu164Gln	p.E164Q	ENST00000264709	NM_175629.2	164	Gag/Cag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259416	89259416	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	39	240	0	ENST00000336596.2:c.560G>C	p.Gly187Ala	p.G187A	ENST00000336596	NM_005233.5	187	gGt/gCt																																																																															
ATR	545	MSKCC	GRCh37	3	142215946	142215946	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0059272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	54	188	0	ENST00000350721.4:c.5647T>G	p.Trp1883Gly	p.W1883G	ENST00000350721	NM_001184.3	1883	Tgg/Ggg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191392	185191392	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			521	46	381	0	ENST00000265026.3:c.2273C>A	p.Ser758Tyr	p.S758Y	ENST00000265026	NM_004721.4	758	tCc/tAc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31464408	31464408	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	37	177	0	ENST00000344624.3:c.2509G>C	p.Glu837Gln	p.E837Q	ENST00000344624		837	Gaa/Caa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206834	162206834	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	82	255	0	ENST00000366898.1:c.841C>A	p.Pro281Thr	p.P281T	ENST00000366898	NM_004562.2	281	Cct/Act																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151896531	151896531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	21	164	0	ENST00000262189.6:c.4106G>A	p.Gly1369Glu	p.G1369E	ENST00000262189	NM_170606.2	1369	gGa/gAa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87482285	87482285	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059272-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	28	289	0	ENST00000277120.3:c.1572C>G	p.Ile524Met	p.I524M	ENST00000277120		524	atC/atG																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	138	190	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	71	281	0	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	35	115	0	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	62	298	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			510	115	291	1	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
AXL	558	MSKCC	GRCh37	19	41744385	41744385	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	74	247	0	ENST00000301178.4:c.1010del	p.Pro337LeufsTer29	p.P337Lfs*29	ENST00000301178	NM_021913.4	335	ggC/gg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	121	228	0	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912149	114912149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			380	61	185	0	ENST00000543371.1:c.1219C>T	p.Arg407Ter	p.R407*	ENST00000543371	NM_001198531.1	407	Cga/Tga																																																																															
RARA	5914	MSKCC	GRCh37	17	38512401	38512402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs745553450		P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	60	248	1	ENST00000254066.5:c.1319dup	p.Pro441AlafsTer5	p.P441Afs*5	ENST00000254066	NM_000964.3	438	gcc/gCcc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123837	46123837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			395	65	220	0	ENST00000334344.6:c.109del	p.Ile37SerfsTer21	p.I37Sfs*21	ENST00000334344	NM_152641.2	35	Aaa/aa																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971324	13971324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752431857		P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	118	273	0	ENST00000405192.2:c.605C>T	p.Thr202Met	p.T202M	ENST00000405192	NM_001163147.1	202	aCg/aTg																																																																															
ATM	472	MSKCC	GRCh37	11	108173696	108173696	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			230	27	169	0	ENST00000278616.4:c.5441del	p.Leu1814TrpfsTer14	p.L1814Wfs*14	ENST00000278616	NM_000051.3	1812	gcT/gc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67663406	67663406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775874494		P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	83	205	1	ENST00000264010.4:c.1807C>T	p.Arg603Cys	p.R603C	ENST00000264010	NM_006565.3	603	Cgc/Tgc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46256409	46256409	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754382773		P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	62	203	0	ENST00000371998.3:c.637G>A	p.Ala213Thr	p.A213T	ENST00000371998		213	Gcc/Acc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	39	156	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912075	50912077	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	32	333	0	ENST00000440232.2:c.1812_1814del	p.Ser605del	p.S605del	ENST00000440232	NM_002691.3	603	ttCTCc/ttc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231610	5231611	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	33	107	0	ENST00000357368.4:c.1865dup	p.Gln623SerfsTer4	p.Q623Sfs*4	ENST00000357368	NM_002850.3	622	cct/ccCt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944308	81944308	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	72	254	0	ENST00000359376.3:c.1921del	p.His641ThrfsTer11	p.H641Tfs*11	ENST00000359376	NM_002661.3	639	aaC/aa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37089123	37089125	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs1485223012		P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	138	210	0	ENST00000231790.2:c.1852_1854del	p.Lys618del	p.K618del	ENST00000231790	NM_000249.3	615	ctGAAg/ctg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871130	12871131	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	26	260	0	ENST00000228872.4:c.361dup	p.Ala121GlyfsTer4	p.A121Gfs*4	ENST00000228872	NM_004064.3	119	-/G																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	79	328	1	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821381	72821382	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	35	232	1	ENST00000268489.5:c.10793dup	p.Pro3599SerfsTer67	p.P3599Sfs*67	ENST00000268489	NM_006885.3	3598	cct/ccCt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286238	66286238	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	53	178	0	ENST00000273854.3:c.1448del	p.Asn483ThrfsTer18	p.N483Tfs*18	ENST00000273854	NM_004439.5	483	aAc/ac																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395746	45395746	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	84	252	0	ENST00000262160.6:c.388C>T	p.Arg130Ter	p.R130*	ENST00000262160	NM_005901.5	130	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112176350	112176350	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	46	184	0	ENST00000257430.4:c.5059C>T	p.Arg1687Ter	p.R1687*	ENST00000257430	NM_000038.5	1687	Cga/Tga																																																																															
TP63	8626	MSKCC	GRCh37	3	189604298	189604298	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138832017		P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	63	249	0	ENST00000264731.3:c.1465G>A	p.Ala489Thr	p.A489T	ENST00000264731	NM_003722.4	489	Gcc/Acc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086121	16086121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	80	235	0	ENST00000281043.3:c.1297C>T	p.Leu433Phe	p.L433F	ENST00000281043	NM_005378.4	433	Ctc/Ttc																																																																															
LYN	4067	MSKCC	GRCh37	8	56863271	56863271	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752739111		P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	168	185	2	ENST00000519728.1:c.415G>A	p.Ala139Thr	p.A139T	ENST00000519728	NM_002350.3	139	Gca/Aca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8471080	8471080	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	42	167	0	ENST00000356435.5:c.3419A>G	p.Tyr1140Cys	p.Y1140C	ENST00000356435		1140	tAc/tGc																																																																															
RAB35	11021	MSKCC	GRCh37	12	120541697	120541697	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs984926660		P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	79	239	0	ENST00000229340.5:c.160G>A	p.Gly54Arg	p.G54R	ENST00000229340	NM_006861.6	54	Ggg/Agg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45423105	45423105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1341462958		P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	79	230	0	ENST00000262160.6:c.23C>T	p.Thr8Met	p.T8M	ENST00000262160	NM_005901.5	8	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	27	148	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
NADK	65220	MSKCC	GRCh37	1	1685614	1685614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	97	287	0	ENST00000344463.4:c.1412C>T	p.Ala471Val	p.A471V	ENST00000344463		471	gCg/gTg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798487	45798487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			595	107	305	0	ENST00000372115.3:c.482C>T	p.Ala161Val	p.A161V	ENST00000372115	NM_001048171.1	161	gCt/gTt																																																																															
KBTBD4	55709	MSKCC	GRCh37	11	47594943	47594943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	82	272	0	ENST00000430070.2:c.1144G>A	p.Val382Met	p.V382M	ENST00000430070	NM_018095.4	382	Gtg/Atg																																																																															
RAD52	5893	MSKCC	GRCh37	12	1023686	1023686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	80	225	0	ENST00000358495.3:c.878C>T	p.Ala293Val	p.A293V	ENST00000358495	NM_134424.2	293	gCc/gTc																																																																															
RB1	5925	MSKCC	GRCh37	13	49039443	49039443	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	49	195	0	ENST00000267163.4:c.2428A>G	p.Lys810Glu	p.K810E	ENST00000267163	NM_000321.2	810	Aag/Gag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437296	110437296	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	24	63	0	ENST00000375856.3:c.1105G>T	p.Gly369Cys	p.G369C	ENST00000375856	NM_003749.2	369	Ggc/Tgc																																																																															
BLM	641	MSKCC	GRCh37	15	91346830	91346831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	44	162	0	ENST00000355112.3:c.3443dup	p.Leu1149AlafsTer4	p.L1149Afs*4	ENST00000355112	NM_000057.2	1146	-/A																																																																															
TSC2	7249	MSKCC	GRCh37	16	2106241	2106241	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	59	146	0	ENST00000219476.3:c.644T>C	p.Ile215Thr	p.I215T	ENST00000219476	NM_000548.3	215	aTa/aCa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829188	72829188	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	101	328	0	ENST00000268489.5:c.7393A>G	p.Asn2465Asp	p.N2465D	ENST00000268489	NM_006885.3	2465	Aac/Gac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992075	72992075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	79	289	0	ENST00000268489.5:c.1970G>A	p.Gly657Asp	p.G657D	ENST00000268489	NM_006885.3	657	gGc/gAc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16052817	16052817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			113	27	118	0	ENST00000268712.3:c.857G>A	p.Arg286Lys	p.R286K	ENST00000268712	NM_006311.3	286	aGg/aAg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63537661	63537661	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202108391		P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			401	70	164	0	ENST00000307078.5:c.971C>T	p.Pro324Leu	p.P324L	ENST00000307078	NM_004655.3	324	cCt/cTt																																																																															
CIC	23152	MSKCC	GRCh37	19	42795250	42795250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	88	266	0	ENST00000575354.2:c.2330C>T	p.Ala777Val	p.A777V	ENST00000575354	NM_015125.3	777	gCt/gTt																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855846	45855846	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			604	114	350	0	ENST00000391945.4:c.1964A>G	p.Asp655Gly	p.D655G	ENST00000391945	NM_000400.3	655	gAt/gGt																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981798	63981798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			587	97	367	1	ENST00000398590.3:c.2300C>T	p.Ala767Val	p.A767V	ENST00000398590	NM_001177387.1	767	gCg/gTg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156506	55156506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	58	189	0	ENST00000257290.5:c.2907C>A	p.Phe969Leu	p.F969L	ENST00000257290	NM_006206.4	969	ttC/ttA																																																																															
TERT	7015	MSKCC	GRCh37	5	1293432	1293432	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	54	199	0	ENST00000310581.5:c.1569C>G	p.Ser523Arg	p.S523R	ENST00000310581	NM_198253.2	523	agC/agG																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151848652	151848652	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059274-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	45	176	0	ENST00000262189.6:c.12541A>G	p.Lys4181Glu	p.K4181E	ENST00000262189	NM_170606.2	4181	Aag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0059302-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	289	306	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151864386	151864386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059302-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	115	197	0	ENST00000262189.6:c.9595G>A	p.Glu3199Lys	p.E3199K	ENST00000262189	NM_170606.2	3199	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0059304-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	46	360	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0059304-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	14	167	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
MGA	23269	MSKCC	GRCh37	15	42042265	42042265	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059304-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	41	358	0	ENST00000219905.7:c.6460del	p.Leu2154TyrfsTer25	p.L2154Yfs*25	ENST00000219905	NM_001164273.1	2154	Cta/ta																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43784579	43784579	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	224	495	0	ENST00000382044.4:c.95C>G	p.Pro32Arg	p.P32R	ENST00000382044	NM_001141980.1	32	cCt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577024	7577048	+	frameshift_variant	Frame_Shift_Del	DEL	TTAGTGCTCCCTGGGGGCAGCTCGT	TTAGTGCTCCCTGGGGGCAGCTCGT	-			P-0059310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	227	689	0	ENST00000269305.4:c.890_914del	p.His297ArgfsTer40	p.H297Rfs*40	ENST00000269305	NM_001126112.2	297	cACGAGCTGCCCCCAGGGAGCACTAAg/cg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41226417	41226417	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0059310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	422	541	0	ENST00000357654.3:c.4606G>T	p.Glu1536Ter	p.E1536*	ENST00000357654	NM_007294.3	1536	Gag/Tag																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17389621	17389654	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACAGCCCTTCACTGACCCCCGCCTCCCCGGCAGG	ACAGCCCTTCACTGACCCCCGCCTCCCCGGCAGG	-			P-0059310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	157	492	0	ENST00000359435.4:c.787-32_788del		p.X263_splice	ENST00000359435	NM_001033549.1	263																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31017165	31017165	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	148	450	0	ENST00000375687.4:c.496G>T	p.Gly166Trp	p.G166W	ENST00000375687	NM_015338.5	166	Ggg/Tgg																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72873592	72873982	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTGTTCCTGACTCTTTTCCAAAAAGGCCATCATTTTTGAATATTTGTCAGTCCACCAAGGATTATACTTCAAAATCTGTTCAATCGCCTCATCTTCAAAAAAGTCAGCTCTAGGAAAAAACATTGAAAGAACTTACTATACAGGATTTCACTGGCTTTTACTTTTTAACATTTTATCTTAACTCATATTTGTACTAGAAATACAGATTTTAATTCAAAGTACATTTCAAGGAAAGACTGAACACTATATTTACTTTCTTTGTAGTTACTAACCACAAACATAAGTTATTTACCATAAAACAAAAGTAAGTATCTGCCTAAAGGGATATATAACATTGCTGATCTCTTTTTTTTTTTTTTTTAACTTTTTTTAAAAGAGATGGGTCTCAC	TCTTGTTCCTGACTCTTTTCCAAAAAGGCCATCATTTTTGAATATTTGTCAGTCCACCAAGGATTATACTTCAAAATCTGTTCAATCGCCTCATCTTCAAAAAAGTCAGCTCTAGGAAAAAACATTGAAAGAACTTACTATACAGGATTTCACTGGCTTTTACTTTTTAACATTTTATCTTAACTCATATTTGTACTAGAAATACAGATTTTAATTCAAAGTACATTTCAAGGAAAGACTGAACACTATATTTACTTTCTTTGTAGTTACTAACCACAAACATAAGTTATTTACCATAAAACAAAAGTAAGTATCTGCCTAAAGGGATATATAACATTGCTGATCTCTTTTTTTTTTTTTTTTAACTTTTTTTAAAAGAGATGGGTCTCAC	-			P-0059310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	36	412	0	ENST00000325599.8:c.600-280_710del		p.X200_splice	ENST00000325599	NM_018130.2	200																																																																																
AGO2	27161	MSKCC	GRCh37	8	141582944	141582944	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0059310-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			910	96	532	0	ENST00000220592.5:c.303C>A	p.Tyr101Ter	p.Y101*	ENST00000220592	NM_012154.3	101	taC/taA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs863223300		P-0059312-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	108	651	0	ENST00000269305.4:c.532del	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0059312-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	105	404	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123239510	123239510	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059312-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	99	636	0	ENST00000358487.5:c.2327T>C	p.Leu776Pro	p.L776P	ENST00000358487	NM_000141.4	776	cTc/cCc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913407		P-0059314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	184	540	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880956	134880956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1296	166	569	0	ENST00000398015.3:c.1519C>T	p.Arg507Cys	p.R507C	ENST00000398015	NM_004441.4	507	Cgt/Tgt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417852	138417852	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059314-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	848	417	0	ENST00000289153.2:c.1667A>G	p.Asp556Gly	p.D556G	ENST00000289153	NM_006219.2	556	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-	rs587780067		P-0059326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	149	453	0	ENST00000269305.4:c.365_366del	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																															
NADK	65220	MSKCC	GRCh37	1	1686006	1686006	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146015543		P-0059326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	74	466	0	ENST00000344463.4:c.1255G>A	p.Gly419Arg	p.G419R	ENST00000344463		419	Ggg/Agg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584689	187584689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	82	371	0	ENST00000441802.2:c.3344G>T	p.Gly1115Val	p.G1115V	ENST00000441802	NM_005245.3	1115	gGt/gTt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38975693	38975693	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	124	374	0	ENST00000357387.3:c.835G>C	p.Ala279Pro	p.A279P	ENST00000357387	NM_152756.3	279	Gca/Cca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273157	55273157	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0059326-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	122	495	0	ENST00000275493.2:c.3480A>C	p.Lys1160Asn	p.K1160N	ENST00000275493	NM_005228.3	1160	aaA/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587782272		P-0054979-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	67	428	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054979-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	48	329	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225768	26225768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054979-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			766	193	842	1	ENST00000360408.1:c.386G>A	p.Arg129His	p.R129H	ENST00000360408	NM_003532.2	129	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0057897-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			411	21	458	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0059080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	130	348	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
CDH1	999	MSKCC	GRCh37	16	68842428	68842428	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			239	147	428	0	ENST00000261769.5:c.491del	p.Pro164GlnfsTer51	p.P164Qfs*51	ENST00000261769	NM_004360.3	163	tgC/tg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628239	187628239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059080-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	115	413	0	ENST00000441802.2:c.2743G>T	p.Val915Leu	p.V915L	ENST00000441802	NM_005245.3	915	Gta/Tta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519931		P-0059108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	52	296	0	ENST00000263967.3:c.316G>C	p.Gly106Arg	p.G106R	ENST00000263967	NM_006218.2	106	Ggc/Cgc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856124	111856124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1168055611		P-0059108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			731	132	500	0	ENST00000341259.2:c.175C>T	p.Arg59Cys	p.R59C	ENST00000341259	NM_005475.2	59	Cgc/Tgc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485013	57485013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			747	105	497	1	ENST00000371085.3:c.847C>T	p.Arg283Cys	p.R283C	ENST00000371085	NM_000516.4	283	Cgc/Tgc																																																																															
HRAS	3265	MSKCC	GRCh37	11	534289	534289	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs104894229		P-0059108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			704	155	463	0	ENST00000311189.7:c.34G>T	p.Gly12Cys	p.G12C	ENST00000311189		12	Ggc/Tgc																																																																															
NF1	4763	MSKCC	GRCh37	17	29576111	29576111	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854560		P-0059108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	99	363	0	ENST00000358273.4:c.4084C>T	p.Arg1362Ter	p.R1362*	ENST00000358273	NM_001042492.2	1362	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916913	178916924	+	inframe_deletion	In_Frame_Del	DEL	AGTAATTGAACC	AGTAATTGAACC	-			P-0059108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	51	302	0	ENST00000263967.3:c.304_315del	p.Ile102_Val105del	p.I102_V105del	ENST00000263967	NM_006218.2	100	aaAGTAATTGAACCa/aaa																																																																															
TEK	7010	MSKCC	GRCh37	9	27157829	27158123	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GAACTGTGGAAGGTGCCATGGACTTGATCTTGATCAATTCCCTACCTCTTGTATCTGATGCTGAAACATCTCTCACCTGCATTGCCTCTGGGTGGCGCCCCCATGAGCCCATCACCATAGGAAGGGACTTTGAAGCCTTAATGAACCAGCACCAGGATCCGCTGGAAGTTACTCAAGATGTGACCAGAGAATGGGCTAAAAAAGTTGTTTGGAAGAGAGAAAAGGCTAGTAAGATCAATGGTGCTTATTTCTGTGAAGGGCGAGTTCGAGGAGAGGCAATCAGGATACGAACCAT	GAACTGTGGAAGGTGCCATGGACTTGATCTTGATCAATTCCCTACCTCTTGTATCTGATGCTGAAACATCTCTCACCTGCATTGCCTCTGGGTGGCGCCCCCATGAGCCCATCACCATAGGAAGGGACTTTGAAGCCTTAATGAACCAGCACCAGGATCCGCTGGAAGTTACTCAAGATGTGACCAGAGAATGGGCTAAAAAAGTTGTTTGGAAGAGAGAAAAGGCTAGTAAGATCAATGGTGCTTATTTCTGTGAAGGGCGAGTTCGAGGAGAGGCAATCAGGATACGAACCAT	-			P-0059108-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			463	52	335	0	ENST00000380036.4:c.56_350del	p.Thr19ArgfsTer13	p.T19Rfs*13	ENST00000380036	NM_000459.3	18	gGAACTGTGGAAGGTGCCATGGACTTGATCTTGATCAATTCCCTACCTCTTGTATCTGATGCTGAAACATCTCTCACCTGCATTGCCTCTGGGTGGCGCCCCCATGAGCCCATCACCATAGGAAGGGACTTTGAAGCCTTAATGAACCAGCACCAGGATCCGCTGGAAGTTACTCAAGATGTGACCAGAGAATGGGCTAAAAAAGTTGTTTGGAAGAGAGAAAAGGCTAGTAAGATCAATGGTGCTTATTTCTGTGAAGGGCGAGTTCGAGGAGAGGCAATCAGGATACGAACCATg/gg																																																																															
KIT	3815	MSKCC	GRCh37	4	55592139	55592139	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059191-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	60	380	0	ENST00000288135.5:c.1463C>A	p.Thr488Lys	p.T488K	ENST00000288135	NM_000222.2	488	aCg/aAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0059208-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			593	133	553	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0059209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	114	464	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240285	41240285	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	9	451	0	ENST00000379561.5:c.65C>G	p.Ser22Trp	p.S22W	ENST00000379561	NM_002015.3	22	tCg/tGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55231508	55231508	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	90	430	0	ENST00000275493.2:c.1714A>G	p.Thr572Ala	p.T572A	ENST00000275493	NM_005228.3	572	Aca/Gca																																																																															
STK11	6794	MSKCC	GRCh37	19	1221230	1221255	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGTACCCCTTCGAAGGGGACAACA	TCTGTACCCCTTCGAAGGGGACAACA	-			P-0059209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	117	557	0	ENST00000326873.7:c.756_781del	p.Tyr253GlnfsTer4	p.Y253Qfs*4	ENST00000326873	NM_000455.4	251	ggTCTGTACCCCTTCGAAGGGGACAACAtc/ggtc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291545	15291545	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	105	628	0	ENST00000263388.2:c.3089G>C	p.Gly1030Ala	p.G1030A	ENST00000263388	NM_000435.2	1030	gGa/gCa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056557	26056557	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0059209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			573	130	546	0	ENST00000343677.2:c.100A>T	p.Lys34Ter	p.K34*	ENST00000343677	NM_005319.3	34	Aag/Tag																																																																															
CASP8	841	MSKCC	GRCh37	2	202139677	202139703	+	splice_donor_variant,intron_variant	Splice_Site	DEL	GTAGACGGAAACCTCCAAATCCTTTTT	GTAGACGGAAACCTCCAAATCCTTTTT	ATTCTAGTTA			P-0059209-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	36	440	5	ENST00000358485.4:c.837+1_837+27delinsATTCTAGTTA		p.X279_splice	ENST00000358485	NM_001080125.1	279																																																																																
PIK3CD	5293	MSKCC	GRCh37	1	9780232	9780921	+	splice_donor_variant,splice_acceptor_variant,frameshift_variant,stop_lost,intron_variant	Splice_Site	DEL	GCCGCTGCCCTGCTCATCTGCCTGCCCGAGGTGGCCCCGCACCCCGTGTACTACCCCGCCCTGGAGAAGGTCAGTGGGGGCCCCGCCGCGTGAGGCTGAGGGGCTGGCGCGGAGCTCTCCTGGCCCTGCTCCTGGAGCTCTTCAGAGGGTGCTCCCTGGCCACGTCGGGGCTGGGCTACCAGGCATATCTGGGGCCTTCCCAGGGGCCATTTTGCCTGCAGGGATGCTGCGCAGTCTGATGACATTTTCGGTTGTCACAGCTGCCAGGAGGGATGCTCTTGGCATCTCGTGAGTGGAGGCCAGAGCTGCTGTGGATGCGCCTCCATGCAGAGGACAGCGCCCCCTCAAGGATGATTGGGGTGGCAATGCCCGGCCTGGGGGTCCTGCCCGGGCTGGTCCAGGCCCCTGGGGACGCTGAGTGCAGCCGTTTGTTGCAGATCTTGGAGCTGGGGCGACACAGCGAGTGTGTGCATGTCACCGAGGAGGAGGTGAGTGGGGTGGGGGTGTGGGGTGGGGGGCATGGAGCCGGCGTGGAACCAGAGCCCTCACTCCTGCCCACACCCCTCAGCAGCTGCAGCTGCGGGAAATCCTGGAGCGGCGGGGGTCTGGGGAGCTGTATGAGCACGAGAAGGACCTGGTGTGGAAGCTGCGGCATGAAGTCCAGGAGCACTTCCCGGAGGCGCTAGCCCG	GCCGCTGCCCTGCTCATCTGCCTGCCCGAGGTGGCCCCGCACCCCGTGTACTACCCCGCCCTGGAGAAGGTCAGTGGGGGCCCCGCCGCGTGAGGCTGAGGGGCTGGCGCGGAGCTCTCCTGGCCCTGCTCCTGGAGCTCTTCAGAGGGTGCTCCCTGGCCACGTCGGGGCTGGGCTACCAGGCATATCTGGGGCCTTCCCAGGGGCCATTTTGCCTGCAGGGATGCTGCGCAGTCTGATGACATTTTCGGTTGTCACAGCTGCCAGGAGGGATGCTCTTGGCATCTCGTGAGTGGAGGCCAGAGCTGCTGTGGATGCGCCTCCATGCAGAGGACAGCGCCCCCTCAAGGATGATTGGGGTGGCAATGCCCGGCCTGGGGGTCCTGCCCGGGCTGGTCCAGGCCCCTGGGGACGCTGAGTGCAGCCGTTTGTTGCAGATCTTGGAGCTGGGGCGACACAGCGAGTGTGTGCATGTCACCGAGGAGGAGGTGAGTGGGGTGGGGGTGTGGGGTGGGGGGCATGGAGCCGGCGTGGAACCAGAGCCCTCACTCCTGCCCACACCCCTCAGCAGCTGCAGCTGCGGGAAATCCTGGAGCGGCGGGGGTCTGGGGAGCTGTATGAGCACGAGAAGGACCTGGTGTGGAAGCTGCGGCATGAAGTCCAGGAGCACTTCCCGGAGGCGCTAGCCCG	-			P-0059216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			505	253	583	0	ENST00000377346.4:c.1404_1645del		p.X468_splice	ENST00000377346	NM_005026.3	468	GCCGCTGCCCTGCTCATCTGCCTGCCCGAGGTGGCCCCGCACCCCGTGTACTACCCCGCCCTGGAGAAGGTCAGTGGGGGCCCCGCCGCGTGAGGCTGAGGGGCTGGCGCGGAGCTCTCCTGGCCCTGCTCCTGGAGCTCTTCAGAGGGTGCTCCCTGGCCACGTCGGGGCTGGGCTACCAGGCATATCTGGGGCCTTCCCAGGGGCCATTTTGCCTGCAGGGATGCTGCGCAGTCTGATGACATTTTCGGTTGTCACAGCTGCCAGGAGGGATGCTCTTGGCATCTCGTGAGTGGAGGCCAGAGCTGCTGTGGATGCGCCTCCATGCAGAGGACAGCGCCCCCTCAAGGATGATTGGGGTGGCAATGCCCGGCCTGGGGGTCCTGCCCGGGCTGGTCCAGGCCCCTGGGGACGCTGAGTGCAGCCGTTTGTTGCAGATCTTGGAGCTGGGGCGACACAGCGAGTGTGTGCATGTCACCGAGGAGGAGGTGAGTGGGGTGGGGGTGTGGGGTGGGGGGCATGGAGCCGGCGTGGAACCAGAGCCCTCACTCCTGCCCACACCCCTCAGCAGCTGCAGCTGCGGGAAATCCTGGAGCGGCGGGGGTCTGGGGAGCTGTATGAGCACGAGAAGGACCTGGTGTGGAAGCTGCGGCATGAAGTCCAGGAGCACTTCCCGGAGGCGCTAGCCCGg/g																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115267889	115267889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	194	450	0	ENST00000438362.2:c.1844G>A	p.Gly615Asp	p.G615D	ENST00000438362	NM_001242891.1	615	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0059216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	109	280	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578418	7578418	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			257	296	640	0	ENST00000269305.4:c.512A>G	p.Glu171Gly	p.E171G	ENST00000269305	NM_001126112.2	171	gAg/gGg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017740	31017740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	588	393	0	ENST00000375687.4:c.602G>A	p.Ser201Asn	p.S201N	ENST00000375687	NM_015338.5	201	aGc/aAc																																																																															
APC	324	MSKCC	GRCh37	5	112175224	112175225	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0059216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			192	198	484	1	ENST00000257430.4:c.3933_3934del	p.Ile1311MetfsTer3	p.I1311Mfs*3	ENST00000257430	NM_000038.5	1311	atTGga/atga																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793211	139793212	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748531430		P-0059216-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	497	396	1	ENST00000247668.2:c.26dup	p.Gly10TrpfsTer70	p.G10Wfs*70	ENST00000247668	NM_021138.3	7	acc/aCcc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACCCCC			P-0059221-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			935	31	610	0	ENST00000275493.2:c.2311_2319dup	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	gac/gACAACCCCCac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0059223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			287	221	630	0	ENST00000269305.4:c.672+1del		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0059223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			65	42	168	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133249311	133249311	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	421	674	0	ENST00000320574.5:c.1588G>C	p.Asp530His	p.D530H	ENST00000320574	NM_006231.2	530	Gac/Cac																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434754	99434754	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	143	572	0	ENST00000268035.6:c.841T>A	p.Phe281Ile	p.F281I	ENST00000268035	NM_000875.3	281	Ttc/Atc																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349079	11349079	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0059223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	274	681	0	ENST00000332029.2:c.257T>G	p.Val86Gly	p.V86G	ENST00000332029	NM_003745.1	86	gTg/gGg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984566	72984566	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	143	673	0	ENST00000268489.5:c.3018C>G	p.Asp1006Glu	p.D1006E	ENST00000268489	NM_006885.3	1006	gaC/gaG																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81954821	81954821	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	52	356	0	ENST00000359376.3:c.2254C>A	p.Leu752Ile	p.L752I	ENST00000359376	NM_002661.3	752	Ctc/Atc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40864396	40864396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	117	483	1	ENST00000428826.2:c.1312G>A	p.Glu438Lys	p.E438K	ENST00000428826		438	Gaa/Aaa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243464	41243464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			88	39	247	0	ENST00000357654.3:c.4084G>T	p.Asp1362Tyr	p.D1362Y	ENST00000357654	NM_007294.3	1362	Gat/Tat																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424552	47424552	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	63	338	0	ENST00000404338.3:c.2620C>G	p.Leu874Val	p.L874V	ENST00000404338	NM_004491.4	874	Ctt/Gtt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661253	227661253	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	204	680	0	ENST00000305123.5:c.2202C>G	p.Asn734Lys	p.N734K	ENST00000305123	NM_005544.2	734	aaC/aaG																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966576	36966576	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			347	292	608	0	ENST00000358127.4:c.750C>G	p.Phe250Leu	p.F250L	ENST00000358127	NM_001280556.1	250	ttC/ttG																																																																															
FANCC	2176	MSKCC	GRCh37	9	98011513	98011513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			105	104	309	0	ENST00000289081.3:c.61G>T	p.Val21Leu	p.V21L	ENST00000289081	NM_000136.2	21	Gta/Tta																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509702	106509704	+	missense_variant	Missense_Mutation	ONP	CCT	CCT	ACA			P-0059223-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	113	514	0	ENST00000359195.3:c.1696_1698delinsACA	p.Pro566Thr	p.P566T	ENST00000359195	NM_002649.2	566	CCT/ACA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0059230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			20	459	896	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717615	89717615	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909227		P-0059230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			22	334	335	0	ENST00000371953.3:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000371953	NM_000314.4	214	Cag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108218052	108218052	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			15	269	187	0	ENST00000278616.4:c.8631G>C	p.Leu2877Phe	p.L2877F	ENST00000278616	NM_000051.3	2877	ttG/ttC																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942151	71942204	+	inframe_deletion	In_Frame_Del	DEL	AGGAGAACTCAGTGGGCGACCGCGAGTGGCTGGACCTACTGCGCGGGGGCCTCA	AGGAGAACTCAGTGGGCGACCGCGAGTGGCTGGACCTACTGCGCGGGGGCCTCA	-			P-0059230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			57	355	865	0	ENST00000298229.2:c.1420_1473del	p.Asn474_Glu491del	p.N474_E491del	ENST00000298229	NM_001567.3	472	cAGGAGAACTCAGTGGGCGACCGCGAGTGGCTGGACCTACTGCGCGGGGGCCTCAag/cag																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189497	94189497	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			13	259	189	0	ENST00000323929.3:c.1508G>C	p.Arg503Pro	p.R503P	ENST00000323929	NM_005591.3	503	cGt/cCt																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872825	35873003	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCTGGGGTGACTCTGCTACATCAGCTACGTCCCAGGGTCAGAGAGAACCCGGGCCAGGCAAGCGGCGCACCTGCTGCAGGTTGTTCTGGAAGTTGAGGAAGGCCAGGTCTCCCTTCACCTGGCGGATCACTTCCATGGTCAGTGCCTTTTCTTCATGGATGATGGCCAAGTGCAGGAA	ATCTGGGGTGACTCTGCTACATCAGCTACGTCCCAGGGTCAGAGAGAACCCGGGCCAGGCAAGCGGCGCACCTGCTGCAGGTTGTTCTGGAAGTTGAGGAAGGCCAGGTCTCCCTTCACCTGGCGGATCACTTCCATGGTCAGTGCCTTTTCTTCATGGATGATGGCCAAGTGCAGGAA	-			P-0059230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	247	403	0	ENST00000216797.5:c.229_336+71del		p.X77_splice	ENST00000216797	NM_020529.2	77																																																																																
BLM	641	MSKCC	GRCh37	15	91292829	91292841	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTTGCAGACTC	TTCTTGCAGACTC	-			P-0059230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			522	524	444	1	ENST00000355112.3:c.331_343del	p.Phe111ArgfsTer14	p.F111Rfs*14	ENST00000355112	NM_000057.2	111	TTCTTGCAGACTCcg/cg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223271	5223271	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			72	473	811	0	ENST00000357368.4:c.2532del	p.Glu845ArgfsTer77	p.E845Rfs*77	ENST00000357368	NM_002850.3	844	ccC/cc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964421	70964421	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059230-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	59	684	0	ENST00000276594.2:c.1607T>A	p.Val536Asp	p.V536D	ENST00000276594	NM_024504.3	536	gTc/gAc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324615	31324615	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1050529		P-0059335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			124	11	194	1	ENST00000412585.2:c.193G>A	p.Ala65Thr	p.A65T	ENST00000412585	NM_005514.6	65	Gcg/Acg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138461576	138461576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0059335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	98	282	0	ENST00000289153.2:c.445C>T	p.Arg149Ter	p.R149*	ENST00000289153	NM_006219.2	149	Cga/Tga																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72881571	72881571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			364	198	307	0	ENST00000325599.8:c.548G>T	p.Arg183Ile	p.R183I	ENST00000325599	NM_018130.2	183	aGa/aTa																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724495	112724495	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	116	397	0	ENST00000369452.4:c.379G>C	p.Glu127Gln	p.E127Q	ENST00000369452	NM_007373.3	127	Gaa/Caa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673350	30673350	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0059335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			894	200	805	0	ENST00000376406.3:c.3610C>G	p.Pro1204Ala	p.P1204A	ENST00000376406	NM_014641.2	1204	Ccc/Gcc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020540	69020540	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0059335-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	723	409	0	ENST00000288368.4:c.2912A>T	p.Asp971Val	p.D971V	ENST00000288368	NM_024870.2	971	gAt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0059337-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	135	446	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059337-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	111	495	0	ENST00000347630.2:c.397T>C	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	Ttc/Ctc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061313	38061313	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1204900727		P-0059337-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	117	625	0	ENST00000250448.2:c.676G>A	p.Asp226Asn	p.D226N	ENST00000250448	NM_004496.3	226	Gac/Aac																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287955	33287955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059337-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	78	570	0	ENST00000374542.5:c.1298C>T	p.Ala433Val	p.A433V	ENST00000374542	NM_001141970.1	433	gCt/gTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152009027	152009027	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0059337-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	45	351	3	ENST00000262189.6:c.595C>T	p.Arg199Ter	p.R199*	ENST00000262189	NM_170606.2	199	Cga/Tga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060682	38060682	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059337-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	162	801	0	ENST00000250448.2:c.1307G>T	p.Ser436Ile	p.S436I	ENST00000250448	NM_004496.3	436	aGc/aTc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117878966	117878966	+	start_lost	Translation_Start_Site	SNP	C	C	A			P-0059337-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	183	374	0	ENST00000297338.2:c.3G>T	p.Met1?	p.M1?	ENST00000297338	NM_006265.2	1	atG/atT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0058597-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			384	349	437	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0058597-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			543	436	492	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139418409	139418409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058597-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			389	144	516	0	ENST00000277541.6:c.163C>T	p.Pro55Ser	p.P55S	ENST00000277541	NM_017617.3	55	Ccg/Tcg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933401	39933401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058597-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			630	87	666	0	ENST00000378444.4:c.1198G>T	p.Gly400Cys	p.G400C	ENST00000378444	NM_001123385.1	400	Ggc/Tgc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691187		P-0059097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	57	501	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs786201838		P-0059097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	70	556	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	104	232	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971023	21971045	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCCCCAGGCATCGCGCACGTC	CGGCCCCAGGCATCGCGCACGTC	-			P-0059097-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	48	485	0	ENST00000304494.5:c.313_335del	p.Asp105SerfsTer7	p.D105Sfs*7	ENST00000304494	NM_000077.4	105	GACGTGCGCGATGCCTGGGGCCGt/t																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781297	9781297	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138090835		P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	115	437	0	ENST00000377346.4:c.1802G>A	p.Arg601Gln	p.R601Q	ENST00000377346	NM_005026.3	601	cGg/cAg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188512	11188512	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	43	407	2	ENST00000361445.4:c.5909A>G	p.Gln1970Arg	p.Q1970R	ENST00000361445	NM_004958.3	1970	cAg/cGg																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366956	40366956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	175	634	0	ENST00000397332.2:c.241G>A	p.Ala81Thr	p.A81T	ENST00000397332	NM_001033082.2	81	Gca/Aca																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46511629	46511629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			282	66	301	0	ENST00000262741.5:c.1148G>A	p.Arg383His	p.R383H	ENST00000262741	NM_003629.3	383	cGt/cAt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			585	150	517	1	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
HRAS	3265	MSKCC	GRCh37	11	533860	533860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			763	63	660	0	ENST00000311189.7:c.196G>A	p.Ala66Thr	p.A66T	ENST00000311189		66	Gcc/Acc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633613	69633613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	119	371	0	ENST00000334134.2:c.89G>A	p.Gly30Asp	p.G30D	ENST00000334134	NM_005247.2	30	gGc/gAc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102201783	102201783	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs776315214		P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	22	344	0	ENST00000263464.3:c.1135A>G	p.Thr379Ala	p.T379A	ENST00000263464	NM_001165.4	379	Act/Gct																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343306	118343306	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			518	122	428	0	ENST00000534358.1:c.1432C>T	p.Arg478Ter	p.R478*	ENST00000534358	NM_005933.3	478	Cga/Tga																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505404	125505404	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	30	333	0	ENST00000428830.2:c.700del	p.Ile234SerfsTer6	p.I234Sfs*6	ENST00000428830	NM_001114121.2	232	Aaa/aa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	88	292	0	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428256	49428256	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201127814		P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			661	138	572	0	ENST00000301067.7:c.10444C>T	p.Arg3482Trp	p.R3482W	ENST00000301067	NM_003482.3	3482	Cgg/Tgg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111886011	111886011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			646	152	594	0	ENST00000341259.2:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000341259	NM_005475.2	545	Gag/Aag																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			654	234	577	6	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
POLE	5426	MSKCC	GRCh37	12	133253240	133253240	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	92	361	0	ENST00000320574.5:c.802-1G>T		p.X268_splice	ENST00000320574	NM_006231.2	268																																																																																
IRS2	8660	MSKCC	GRCh37	13	110434477	110434477	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747968639		P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	145	484	0	ENST00000375856.3:c.3924del	p.Pro1309ArgfsTer22	p.P1309Rfs*22	ENST00000375856	NM_003749.2	1308	ggG/gg																																																																															
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			439	103	400	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																															
B2M	567	MSKCC	GRCh37	15	45007833	45007834	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			434	101	407	0	ENST00000558401.1:c.285dup	p.Asp96ArgfsTer2	p.D96Rfs*2	ENST00000558401	NM_004048.2	94	gaa/gAaa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576174	88576174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	117	454	0	ENST00000360948.2:c.1499C>T	p.Thr500Ile	p.T500I	ENST00000360948	NM_001012338.2	500	aCt/aTt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347734	347734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			608	67	464	0	ENST00000262320.3:c.1772G>A	p.Gly591Asp	p.G591D	ENST00000262320	NM_003502.3	591	gGc/gAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2124310	2124310	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs936484229		P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			679	50	508	0	ENST00000219476.3:c.2465C>T	p.Ala822Val	p.A822V	ENST00000219476	NM_000548.3	822	gCg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786682	3786682	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780939128		P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	143	432	0	ENST00000262367.5:c.4529C>T	p.Ala1510Val	p.A1510V	ENST00000262367	NM_004380.2	1510	gCg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3808012	3808013	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			416	88	395	0	ENST00000262367.5:c.3406_3407del	p.Ser1136HisfsTer32	p.S1136Hfs*32	ENST00000262367	NM_004380.2	1136	TCc/c																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813797	50813797	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200451975		P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	119	424	0	ENST00000398568.2:c.1351G>A	p.Val451Ile	p.V451I	ENST00000398568	NM_001042412.1	451	Gtc/Atc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37676211	37676211	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			355	77	348	0	ENST00000447079.4:c.2966T>C	p.Ile989Thr	p.I989T	ENST00000447079	NM_015083.1	989	aTt/aCt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs80357522		P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	29	394	1	ENST00000357654.3:c.1961del	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			220	35	186	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245891	5245891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			635	179	598	1	ENST00000357368.4:c.884G>A	p.Arg295Gln	p.R295Q	ENST00000357368	NM_002850.3	295	cGg/cAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274304	5274304	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			583	54	471	0	ENST00000357368.4:c.143del	p.Gly48ValfsTer17	p.G48Vfs*17	ENST00000357368	NM_002850.3	48	gGt/gt																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965807	18965807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	146	527	0	ENST00000262803.5:c.1385G>A	p.Arg462His	p.R462H	ENST00000262803	NM_002911.3	462	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			755	172	757	2	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229435	36229435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	147	545	0	ENST00000222270.7:c.8125C>T	p.Arg2709Cys	p.R2709C	ENST00000222270	NM_014727.1	2709	Cgc/Tgc																																																																															
CD79A	973	MSKCC	GRCh37	19	42381419	42381420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			527	123	490	0	ENST00000221972.3:c.47dup	p.Leu17ProfsTer42	p.L17Pfs*42	ENST00000221972	NM_021601.3	15	-/T																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424922	47424922	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371941437		P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	148	407	0	ENST00000404338.3:c.2990G>A	p.Arg997Gln	p.R997Q	ENST00000404338	NM_004491.4	997	cGa/cAa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905055	50905055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	56	437	1	ENST00000440232.2:c.342del	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	113	Ggg/gg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523040	25523040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			536	135	482	0	ENST00000264709.3:c.145G>A	p.Gly49Arg	p.G49R	ENST00000264709	NM_175629.2	49	Ggg/Agg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47672778	47672778	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	34	253	0	ENST00000233146.2:c.1369del	p.Thr457LeufsTer2	p.T457Lfs*2	ENST00000233146	NM_000251.2	456	acA/ac																																																																															
INHA	3623	MSKCC	GRCh37	2	220439664	220439664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			708	149	634	0	ENST00000243786.2:c.521del	p.Pro174LeufsTer16	p.P174Lfs*16	ENST00000243786	NM_002191.3	173	Ccc/cc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31025133	31025133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	107	357	0	ENST00000375687.4:c.4618G>A	p.Val1540Met	p.V1540M	ENST00000375687	NM_015338.5	1540	Gtg/Atg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279753	46279753	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200806631		P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	110	373	0	ENST00000371998.3:c.3679G>A	p.Ala1227Thr	p.A1227T	ENST00000371998		1227	Gcc/Acc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	128	404	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656840	45656840	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	137	497	0	ENST00000407780.3:c.316del	p.Gln106ArgfsTer11	p.Q106Rfs*11	ENST00000407780	NM_001283052.1	106	Cag/ag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134644720	134644720	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1240367222		P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	49	394	0	ENST00000398015.3:c.121G>A	p.Gly41Arg	p.G41R	ENST00000398015	NM_004441.4	41	Ggg/Agg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670238	134670238	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			535	53	424	2	ENST00000398015.3:c.152del	p.Asn51ThrfsTer2	p.N51Tfs*2	ENST00000398015	NM_004441.4	50	gAa/ga																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138376557	138376557	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	79	261	0	ENST00000289153.2:c.2917A>G	p.Thr973Ala	p.T973A	ENST00000289153	NM_006219.2	973	Aca/Gca																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182679077	182679077	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1484029696		P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			135	31	215	0	ENST00000292782.4:c.457C>T	p.Arg153Ter	p.R153*	ENST00000292782	NM_020640.2	153	Cga/Tga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672224	86672224	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	114	329	0	ENST00000274376.6:c.2026C>T	p.Gln676Ter	p.Q676*	ENST00000274376	NM_002890.2	676	Cag/Tag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86686679	86686679	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	91	381	0	ENST00000274376.6:c.3127del	p.Thr1043ProfsTer?	p.T1043Pfs*?	ENST00000274376	NM_002890.2	1041	acA/ac																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523291	176523291	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776973649		P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			784	185	707	0	ENST00000292408.4:c.1948C>T	p.Arg650Cys	p.R650C	ENST00000292408	NM_213647.1	650	Cgc/Tgc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046700	180046700	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			670	172	630	0	ENST00000261937.6:c.2612G>T	p.Ser871Ile	p.S871I	ENST00000261937	NM_182925.4	871	aGc/aTc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2954909	2954909	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775400791		P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			555	140	505	0	ENST00000396946.4:c.2801C>T	p.Ser934Leu	p.S934L	ENST00000396946	NM_032415.4	934	tCg/tTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	121	430	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			310	67	298	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
NBN	4683	MSKCC	GRCh37	8	90995015	90995015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	67	303	0	ENST00000265433.3:c.106G>A	p.Glu36Lys	p.E36K	ENST00000265433	NM_002485.4	36	Gaa/Aaa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135785964	135785964	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs118203506		P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	54	450	0	ENST00000298552.3:c.1257del	p.Arg420GlyfsTer20	p.R420Gfs*20	ENST00000298552	NM_001162426.1	419	ccC/cc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390697	139390697	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	174	701	1	ENST00000277541.6:c.7494del	p.Ser2499AlafsTer90	p.S2499Afs*90	ENST00000277541	NM_017617.3	2498	ccC/cc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	84	329	4	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53243974	53243974	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	89	489	0	ENST00000375401.3:c.1019T>C	p.Leu340Pro	p.L340P	ENST00000375401	NM_004187.3	340	cTg/cCg																																																																															
MED12	9968	MSKCC	GRCh37	X	70350031	70350031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0059098-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	78	465	0	ENST00000374080.3:c.4018del	p.Gln1340SerfsTer5	p.Q1340Sfs*5	ENST00000374080		1338	aaC/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0059100-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			609	18	565	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0059100-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			289	18	289	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
MED12	9968	MSKCC	GRCh37	X	70355017	70355018	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0059100-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	25	254	0	ENST00000374080.3:c.4939_4940delinsTT	p.Asp1647Phe	p.D1647F	ENST00000374080		1647	GAt/TTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0059102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	261	597	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0059102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	272	400	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa																																																																															
ALK	238	MSKCC	GRCh37	2	29443676	29443676	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56315533		P-0059102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			276	221	403	0	ENST00000389048.3:c.3541C>T	p.Arg1181Cys	p.R1181C	ENST00000389048	NM_004304.4	1181	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112174117	112174117	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0059102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	59	372	0	ENST00000257430.4:c.2827del	p.Ser943GlnfsTer12	p.S943Qfs*12	ENST00000257430	NM_000038.5	942	aaT/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0059102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			109	146	182	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789646	3789646	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140133512		P-0059102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			446	223	401	0	ENST00000262367.5:c.4213G>A	p.Val1405Met	p.V1405M	ENST00000262367	NM_004380.2	1405	Gtg/Atg																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165603	118165603	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148397151		P-0059102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	187	487	0	ENST00000369448.3:c.113G>A	p.Arg38Gln	p.R38Q	ENST00000369448	NM_017709.3	38	cGa/cAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910880	114910880	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0059102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	194	384	1	ENST00000543371.1:c.1000del	p.Ser334GlnfsTer17	p.S334Qfs*17	ENST00000543371	NM_001198531.1	333	agT/ag																																																																															
ATRX	546	MSKCC	GRCh37	X	76888733	76888733	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0059102-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	74	270	0	ENST00000373344.5:c.5096A>T	p.Lys1699Ile	p.K1699I	ENST00000373344	NM_000489.3	1699	aAa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0059112-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			507	171	615	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059112-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	44	320	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0059112-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			744	99	657	0	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313153	30313153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059112-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			623	76	562	0	ENST00000262643.3:c.847G>T	p.Asp283Tyr	p.D283Y	ENST00000262643	NM_001238.2	283	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0059112-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	86	304	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
BARD1	580	MSKCC	GRCh37	2	215593518	215593518	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059112-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			570	111	571	0	ENST00000260947.4:c.2216A>G	p.Tyr739Cys	p.Y739C	ENST00000260947	NM_000465.2	739	tAt/tGt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056404	26056404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059112-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	150	580	0	ENST00000343677.2:c.253A>G	p.Lys85Glu	p.K85E	ENST00000343677	NM_005319.3	85	Aag/Gag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0059136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	153	374	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0059136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	164	509	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
TP63	8626	MSKCC	GRCh37	3	189612073	189612073	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142762485		P-0059136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	183	575	0	ENST00000264731.3:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000264731	NM_003722.4	609	Gaa/Aaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66242732	66242732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			340	168	538	0	ENST00000273854.3:c.1840C>T	p.His614Tyr	p.H614Y	ENST00000273854	NM_004439.5	614	Cat/Tat																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10247809	10247809	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1368186167		P-0059136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	175	630	0	ENST00000340748.4:c.4393G>A	p.Gly1465Ser	p.G1465S	ENST00000340748		1465	Ggc/Agc																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67630386	67630390	+	frameshift_variant	Frame_Shift_Del	DEL	TTATG	TTATG	A			P-0059136-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	147	362	0	ENST00000272342.5:c.572_576delinsA	p.Leu191GlnfsTer14	p.L191Qfs*14	ENST00000272342	NM_019002.3	191	cTTATG/cA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0059138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	8	236	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0059138-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	13	555	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578195	7578197	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0059163-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			51	244	432	0	ENST00000269305.4:c.652_654del	p.Val218del	p.V218del	ENST00000269305	NM_001126112.2	218	GTG/-																																																																															
ATRX	546	MSKCC	GRCh37	X	76891498	76891498	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0059163-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	30	264	0	ENST00000373344.5:c.4607A>C	p.Lys1536Thr	p.K1536T	ENST00000373344	NM_000489.3	1536	aAg/aCg																																																																															
WT1	7490	MSKCC	GRCh37	11	32414227	32414227	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059163-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	74	359	0	ENST00000332351.3:c.1324C>A	p.Gln442Lys	p.Q442K	ENST00000332351	NM_024426.4	442	Caa/Aaa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857044	9857044	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201707833		P-0059163-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	53	317	1	ENST00000330684.3:c.4357G>A	p.Val1453Met	p.V1453M	ENST00000330684	NM_001134407.1	1453	Gtg/Atg																																																																															
TET1	80312	MSKCC	GRCh37	10	70406597	70406597	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059163-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	55	366	0	ENST00000373644.4:c.4111A>G	p.Ser1371Gly	p.S1371G	ENST00000373644	NM_030625.2	1371	Agt/Ggt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31380577	31380577	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0059163-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			414	53	396	0	ENST00000328111.2:c.1066+1G>A		p.X356_splice	ENST00000328111	NM_006892.3	356																																																																																
TP63	8626	MSKCC	GRCh37	3	189604181	189604181	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0059163-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	298	343	0	ENST00000264731.3:c.1350-2A>T		p.X450_splice	ENST00000264731	NM_003722.4	450																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8517945	8517946	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0059163-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			894	68	363	0	ENST00000356435.5:c.1445dup	p.Leu482PhefsTer25	p.L482Ffs*25	ENST00000356435		482	tta/ttTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934571		P-0059170-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			544	13	390	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0059170-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			737	24	532	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486295	8486295	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	152	443	0	ENST00000356435.5:c.2522T>C	p.Ile841Thr	p.I841T	ENST00000356435		841	aTt/aCt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249977	110249977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	83	515	0	ENST00000374672.4:c.698C>T	p.Ala233Val	p.A233V	ENST00000374672	NM_004235.4	233	gCg/gTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242494	+	protein_altering_variant	In_Frame_Del	DEL	TAAGAGAAGCAACATCTCCGAAAGC	TAAGAGAAGCAACATCTCCGAAAGC	CGAAAGG	rs121913438		P-0059171-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			435	94	365	0	ENST00000275493.2:c.2240_2264delinsCGAAAGG	p.Leu747_Ala755delinsSerLysGly	p.L747_A755delinsSKG	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCCGAAAGCc/tCGAAAGGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0033800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	167	717	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
SDHB	6390	MSKCC	GRCh37	1	17349180	17349180	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138996609		P-0033800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	78	564	0	ENST00000375499.3:c.688C>T	p.Arg230Cys	p.R230C	ENST00000375499	NM_003000.2	230	Cgc/Tgc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121935	2121947	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGAGTGGGGCC	GGTGAGTGGGGCC	-			P-0033800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	123	709	0	ENST00000219476.3:c.2097+2_2097+14del		p.X699_splice	ENST00000219476	NM_000548.3	699																																																																																
IFNGR1	3459	MSKCC	GRCh37	6	137525611	137525611	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	49	537	0	ENST00000367739.4:c.404G>C	p.Arg135Thr	p.R135T	ENST00000367739	NM_000416.2	135	aGa/aCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	59	588	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	61	661	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538904	187538904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	55	473	0	ENST00000441802.2:c.8836G>A	p.Asp2946Asn	p.D2946N	ENST00000441802	NM_005245.3	2946	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578476	7578476	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	101	909	6	ENST00000269305.4:c.454C>A	p.Pro152Thr	p.P152T	ENST00000269305	NM_001126112.2	152	Ccg/Acg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539435	187539435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	57	557	0	ENST00000441802.2:c.8305G>A	p.Glu2769Lys	p.E2769K	ENST00000441802	NM_005245.3	2769	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539741	187539741	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1423289460		P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	64	556	0	ENST00000441802.2:c.7999G>A	p.Glu2667Lys	p.E2667K	ENST00000441802	NM_005245.3	2667	Gaa/Aaa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435936	56435936	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	130	504	0	ENST00000407977.2:c.1201G>T	p.Glu401Ter	p.E401*	ENST00000407977		401	Gag/Tag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251785	212251785	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	52	390	0	ENST00000342788.4:c.3274C>A	p.Pro1092Thr	p.P1092T	ENST00000342788	NM_005235.2	1092	Cct/Act																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538291	187538291	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	77	725	0	ENST00000441802.2:c.8943G>C	p.Lys2981Asn	p.K2981N	ENST00000441802	NM_005245.3	2981	aaG/aaC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538898	187538898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	50	460	0	ENST00000441802.2:c.8842G>A	p.Glu2948Lys	p.E2948K	ENST00000441802	NM_005245.3	2948	Gaa/Aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539378	187539378	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	55	579	0	ENST00000441802.2:c.8362G>C	p.Glu2788Gln	p.E2788Q	ENST00000441802	NM_005245.3	2788	Gag/Cag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539495	187539495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	81	549	0	ENST00000441802.2:c.8245G>A	p.Glu2749Lys	p.E2749K	ENST00000441802	NM_005245.3	2749	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539747	187539747	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	68	539	0	ENST00000441802.2:c.7993G>C	p.Glu2665Gln	p.E2665Q	ENST00000441802	NM_005245.3	2665	Gaa/Caa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539810	187539810	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	67	584	0	ENST00000441802.2:c.7930G>T	p.Glu2644Ter	p.E2644*	ENST00000441802	NM_005245.3	2644	Gag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539975	187539975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	76	542	0	ENST00000441802.2:c.7765G>A	p.Asp2589Asn	p.D2589N	ENST00000441802	NM_005245.3	2589	Gac/Aac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540019	187540019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	75	564	0	ENST00000441802.2:c.7721G>C	p.Gly2574Ala	p.G2574A	ENST00000441802	NM_005245.3	2574	gGa/gCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540749	187540749	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	59	507	0	ENST00000441802.2:c.6991G>C	p.Asp2331His	p.D2331H	ENST00000441802	NM_005245.3	2331	Gat/Cat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540872	187540872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	56	447	0	ENST00000441802.2:c.6868G>A	p.Val2290Met	p.V2290M	ENST00000441802	NM_005245.3	2290	Gtg/Atg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541076	187541076	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	50	480	0	ENST00000441802.2:c.6664G>C	p.Asp2222His	p.D2222H	ENST00000441802	NM_005245.3	2222	Gac/Cac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541405	187541405	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	50	519	0	ENST00000441802.2:c.6335G>C	p.Arg2112Thr	p.R2112T	ENST00000441802	NM_005245.3	2112	aGa/aCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541421	187541421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	48	528	0	ENST00000441802.2:c.6319G>A	p.Asp2107Asn	p.D2107N	ENST00000441802	NM_005245.3	2107	Gac/Aac																																																																															
PMS2	5395	MSKCC	GRCh37	7	6043376	6043376	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	14	95	0	ENST00000265849.7:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000265849	NM_000535.5	100	Cag/Tag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932540	39932541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	96	897	0	ENST00000378444.4:c.2058dup	p.Pro687ThrfsTer53	p.P687Tfs*53	ENST00000378444	NM_001123385.1	686	-/A																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0034233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	166	351	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685315	89685315	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs876658153		P-0034233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	69	282	0	ENST00000371953.3:c.209+1G>A		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																																
SMO	6608	MSKCC	GRCh37	7	128852158	128852158	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141955434		P-0034233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	84	502	0	ENST00000249373.3:c.2230C>T	p.Pro744Ser	p.P744S	ENST00000249373	NM_005631.4	744	Cct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	204	486	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294576	1294576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	127	299	0	ENST00000310581.5:c.425G>A	p.Arg142His	p.R142H	ENST00000310581	NM_198253.2	142	cGc/cAc																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66511702	66511702	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	99	231	0	ENST00000358598.2:c.162T>G	p.Phe54Leu	p.F54L	ENST00000358598	NM_212471.2	54	ttT/ttG																																																																															
KDR	3791	MSKCC	GRCh37	4	55976857	55976857	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	50	440	0	ENST00000263923.4:c.1055C>A	p.Ala352Glu	p.A352E	ENST00000263923	NM_002253.2	352	gCg/gAg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781518	135781518	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	83	216	0	ENST00000298552.3:c.1447T>C	p.Ser483Pro	p.S483P	ENST00000298552	NM_001162426.1	483	Tct/Cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577557	7577557	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519982		P-0041595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	320	697	0	ENST00000269305.4:c.724T>G	p.Cys242Gly	p.C242G	ENST00000269305	NM_001126112.2	242	Tgc/Ggc																																																																															
APC	324	MSKCC	GRCh37	5	112173847	112173848	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0041595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	144	384	0	ENST00000257430.4:c.2563_2564dup	p.Arg856AsnfsTer6	p.R856Nfs*6	ENST00000257430	NM_000038.5	852	-/GA																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0041595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	90	213	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
ATR	545	MSKCC	GRCh37	3	142242849	142242849	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	156	477	0	ENST00000350721.4:c.4138G>T	p.Asp1380Tyr	p.D1380Y	ENST00000350721	NM_001184.3	1380	Gat/Tat																																																																															
SRC	6714	MSKCC	GRCh37	20	36012701	36012701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	397	159	0	ENST00000358208.4:c.145G>A	p.Gly49Ser	p.G49S	ENST00000358208		49	Ggc/Agc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750575	57750575	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	158	429	0	ENST00000274289.3:c.1893A>C	p.Lys631Asn	p.K631N	ENST00000274289	NM_006622.3	631	aaA/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0054877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	249	788	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0054877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	79	383	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175433	112175434	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0054877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	47	331	0	ENST00000257430.4:c.4143_4144del	p.Leu1382HisfsTer3	p.L1382Hfs*3	ENST00000257430	NM_000038.5	1381	cCA/c																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741637	17741637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	149	525	1	ENST00000250003.3:c.308G>A	p.Arg103His	p.R103H	ENST00000250003	NM_002478.4	103	cGc/cAc																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518586	204518586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	49	314	0	ENST00000367182.3:c.1249C>T	p.Leu417Phe	p.L417F	ENST00000367182	NM_001278516.1	417	Ctt/Ttt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987066	36987066	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1325836054		P-0054877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	138	1076	0	ENST00000354822.5:c.623G>A	p.Arg208Gln	p.R208Q	ENST00000354822	NM_001079668.2	208	cGa/cAa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139837	55139837	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	111	738	1	ENST00000257290.5:c.1498C>T	p.Arg500Ter	p.R500*	ENST00000257290	NM_006206.4	500	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0054915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	111	556	2	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0054915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	169	753	1	ENST00000269305.4:c.783-1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
TET2	54790	MSKCC	GRCh37	4	106164884	106164884	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1339287432		P-0054915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	139	544	0	ENST00000380013.4:c.3752C>T	p.Thr1251Met	p.T1251M	ENST00000380013	NM_001127208.2	1251	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112128141	112128141	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0054915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	184	390	1	ENST00000257430.4:c.646-2A>C		p.X216_splice	ENST00000257430	NM_000038.5	216																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	88	404	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112174885	112174886	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0054927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	54	270	0	ENST00000257430.4:c.3595_3596del	p.Lys1199GlufsTer8	p.K1199Efs*8	ENST00000257430	NM_000038.5	1198	tcAAag/tcag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578232	7578232	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0054927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	516	749	0	ENST00000269305.4:c.617T>A	p.Leu206Ter	p.L206*	ENST00000269305	NM_001126112.2	206	tTg/tAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341701	8341701	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766088715		P-0054927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	109	486	0	ENST00000356435.5:c.4939G>A	p.Glu1647Lys	p.E1647K	ENST00000356435		1647	Gaa/Aaa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221354	36221354	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766608261		P-0054927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1982	357	840	0	ENST00000222270.7:c.5188G>A	p.Val1730Met	p.V1730M	ENST00000222270	NM_014727.1	1730	Gtg/Atg																																																																															
JUN	3725	MSKCC	GRCh37	1	59247816	59247816	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	386	819	0	ENST00000371222.2:c.927del	p.Lys309AsnfsTer5	p.K309Nfs*5	ENST00000371222	NM_002228.3	309	aaA/aa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243675653	243675653	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	43	309	0	ENST00000263826.5:c.1327A>G	p.Thr443Ala	p.T443A	ENST00000263826	NM_005465.4	443	Act/Gct																																																																															
SESN3	143686	MSKCC	GRCh37	11	94908714	94908714	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	111	591	0	ENST00000536441.1:c.1340C>G	p.Thr447Ser	p.T447S	ENST00000536441	NM_144665.3	447	aCt/aGt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2107180	2107180	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0054927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	276	663	0	ENST00000219476.3:c.848+1G>T		p.X283_splice	ENST00000219476	NM_000548.3	283																																																																																
DNAJB1	3337	MSKCC	GRCh37	19	14628976	14628976	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	159	492	0	ENST00000254322.2:c.186G>C	p.Glu62Asp	p.E62D	ENST00000254322	NM_006145.1	62	gaG/gaC																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14629105	14629105	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	117	339	0	ENST00000254322.2:c.57G>C	p.Glu19Asp	p.E19D	ENST00000254322	NM_006145.1	19	gaG/gaC																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14629141	14629141	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs779624471		P-0054927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	128	413	0	ENST00000254322.2:c.21G>C	p.Gln7His	p.Q7H	ENST00000254322	NM_006145.1	7	caG/caC																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45657058	45657070	+	frameshift_variant	Frame_Shift_Del	DEL	ACGTCGCTGCCTA	ACGTCGCTGCCTA	-			P-0054927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	87	412	0	ENST00000407780.3:c.86_98del	p.Val29GlyfsTer15	p.V29Gfs*15	ENST00000407780	NM_001283052.1	29	gTAGGCAGCGACGTg/gg																																																																															
TERT	7015	MSKCC	GRCh37	5	1294139	1294139	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1399684203		P-0054927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	324	618	1	ENST00000310581.5:c.862G>A	p.Ala288Thr	p.A288T	ENST00000310581	NM_198253.2	288	Gcg/Acg																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0055008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	28	153	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106861	27106861	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0055008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	9	243	0	ENST00000324856.7:c.6472C>T	p.Arg2158Ter	p.R2158*	ENST00000324856	NM_006015.4	2158	Cga/Tga																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355957	73355957	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0055008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	179	292	0	ENST00000377767.4:c.14del	p.Lys5ArgfsTer4	p.K5Rfs*4	ENST00000377767	NM_014953.3	5	aAg/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577130	7577131	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTGT			P-0055008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	166	302	0	ENST00000269305.4:c.803_807dup	p.Phe270ThrfsTer77	p.F270Tfs*77	ENST00000269305	NM_001126112.2	269	-/ACAGC																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15818015	15818017	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0055008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	44	73	0	ENST00000307771.7:c.147_149del	p.Glu49del	p.E49del	ENST00000307771	NM_005089.3	48	GAG/-																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	69	404	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	69	472	4	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	51	342	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	99	614	0	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913252	39913253	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs797044647		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	135	587	0	ENST00000378444.4:c.4862dup	p.Gly1622ArgfsTer7	p.G1622Rfs*7	ENST00000378444	NM_001123385.1	1621	cca/ccCa																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	26	362	2	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023559	27023560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	31	431	1	ENST00000324856.7:c.671dup	p.Pro225AlafsTer175	p.P225Afs*175	ENST00000324856	NM_006015.4	222	tac/taCc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266849	18266849	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201370957		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	40	439	2	ENST00000222254.8:c.160G>A	p.Val54Met	p.V54M	ENST00000222254	NM_005027.3	54	Gtg/Atg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391119	139391119	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780869345		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	171	854	0	ENST00000277541.6:c.7072G>A	p.Ala2358Thr	p.A2358T	ENST00000277541	NM_017617.3	2358	Gcc/Acc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2956964	2956964	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1395288944		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	143	651	0	ENST00000396946.4:c.2663G>A	p.Arg888His	p.R888H	ENST00000396946	NM_032415.4	888	cGt/cAt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777898	3777898	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	78	928	1	ENST00000262367.5:c.7150del	p.His2384ThrfsTer12	p.H2384Tfs*12	ENST00000262367	NM_004380.2	2384	Cac/ac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440912	56440912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	288	695	0	ENST00000407977.2:c.425C>T	p.Thr142Ile	p.T142I	ENST00000407977		142	aCt/aTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518020	187518020	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755404071		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	127	552	0	ENST00000441802.2:c.12674C>T	p.Thr4225Met	p.T4225M	ENST00000441802	NM_005245.3	4225	aCg/aTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89693003	89693003	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	42	395	0	ENST00000371953.3:c.491del	p.Lys164ArgfsTer3	p.K164Rfs*3	ENST00000371953	NM_000314.4	163	Aaa/aa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157505443	157505443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	48	513	0	ENST00000346085.5:c.3428del	p.Lys1143SerfsTer68	p.K1143Sfs*68	ENST00000346085	NM_020732.3	1142	Aaa/aa																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885939	111885939	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	136	605	0	ENST00000341259.2:c.1566del	p.Glu523SerfsTer25	p.E523Sfs*25	ENST00000341259	NM_005475.2	521	Ccc/cc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713414	40713414	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	117	811	0	ENST00000373198.4:c.4101del	p.Ser1368ProfsTer31	p.S1368Pfs*31	ENST00000373198	NM_133170.3	1367	ccC/cc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56348561	56348561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	73	337	0	ENST00000348428.3:c.374del	p.Pro125GlnfsTer3	p.P125Qfs*3	ENST00000348428	NM_006785.3	123	agC/ag																																																																															
NF1	4763	MSKCC	GRCh37	17	29486050	29486050	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1438566555		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	44	316	0	ENST00000358273.4:c.233del	p.Asn78IlefsTer7	p.N78Ifs*7	ENST00000358273	NM_001042492.2	76	gAa/ga																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	221	807	9	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324892	31324892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	59	191	0	ENST00000412585.2:c.44del	p.Ala15GlyfsTer5	p.A15Gfs*5	ENST00000412585	NM_005514.6	15	gCg/gg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910533	29910533	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	22	262	0	ENST00000376809.5:c.74-1G>T		p.X25_splice	ENST00000376809	NM_002116.7	25																																																																																
RHOA	387	MSKCC	GRCh37	3	49405962	49405962	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	124	548	0	ENST00000418115.1:c.176A>G	p.Asp59Gly	p.D59G	ENST00000418115	NM_001664.2	59	gAc/gGc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7976482	7976482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	132	648	0	ENST00000319144.4:c.1910G>A	p.Arg637Gln	p.R637Q	ENST00000319144	NM_001139.2	637	cGa/cAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097688	27097688	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	75	586	0	ENST00000324856.7:c.3281del	p.Lys1094SerfsTer67	p.K1094Sfs*67	ENST00000324856	NM_006015.4	1093	Aaa/aa																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815802	32815802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	110	673	0	ENST00000354258.4:c.1814G>A	p.Ser605Asn	p.S605N	ENST00000354258	NM_000593.5	605	aGc/aAc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821048	32821048	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	71	900	5	ENST00000354258.4:c.546del	p.Ser184ProfsTer54	p.S184Pfs*54	ENST00000354258	NM_000593.5	182	ccC/cc																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56801430	56801430	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730881932		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	83	498	1	ENST00000337432.4:c.934C>T	p.Arg312Trp	p.R312W	ENST00000337432	NM_058216.2	312	Cgg/Tgg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249911	110249911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	120	621	0	ENST00000374672.4:c.764C>A	p.Pro255His	p.P255H	ENST00000374672	NM_004235.4	255	cCt/cAt																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133898	41133898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	89	406	0	ENST00000379561.5:c.1730del	p.Gly577AlafsTer5	p.G577Afs*5	ENST00000379561	NM_002015.3	577	gGc/gc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753149	42753151	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs199960550		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	133	792	7	ENST00000222329.4:c.1113_1115del	p.Ser373del	p.S373del	ENST00000222329	NM_006494.2	371	tcTTCc/tcc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468397	89468398	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1467832547		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	52	276	1	ENST00000336596.2:c.1938dup	p.Glu647ArgfsTer7	p.E647Rfs*7	ENST00000336596	NM_005233.5	644	tca/tcAa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129222	152129222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	72	752	1	ENST00000206249.3:c.175G>A	p.Ala59Thr	p.A59T	ENST00000206249	NM_000125.3	59	Gcc/Acc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347191	89347191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	123	672	0	ENST00000301030.4:c.5759C>T	p.Thr1920Met	p.T1920M	ENST00000301030	NM_001256183.1	1920	aCg/aTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458005	120458005	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	140	592	0	ENST00000256646.2:c.7340del	p.Gly2447ValfsTer43	p.G2447Vfs*43	ENST00000256646	NM_024408.3	2447	gGt/gt																																																																															
NF1	4763	MSKCC	GRCh37	17	29685497	29685497	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs1417908560		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	32	292	0	ENST00000358273.4:c.7971-1G>T		p.X2657_splice	ENST00000358273	NM_001042492.2	2657																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49443806	49443806	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs556879323		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	117	841	0	ENST00000301067.7:c.3565C>T	p.Arg1189Cys	p.R1189C	ENST00000301067	NM_003482.3	1189	Cgt/Tgt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17950349	17950349	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755309429		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	195	797	0	ENST00000458235.1:c.1378G>A	p.Gly460Arg	p.G460R	ENST00000458235	NM_000215.3	460	Ggg/Agg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323268	31323268	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1322740343		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	28	297	0	ENST00000412585.2:c.721T>C	p.Trp241Arg	p.W241R	ENST00000412585	NM_005514.6	241	Tgg/Cgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436060	49436060	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777415982		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	48	645	2	ENST00000301067.7:c.5921C>T	p.Thr1974Met	p.T1974M	ENST00000301067	NM_003482.3	1974	aCg/aTg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128419995	128419995	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1238730432		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	104	704	1	ENST00000265960.3:c.433C>T	p.Arg145Cys	p.R145C	ENST00000265960	NM_001006617.1	145	Cgc/Tgc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760966	59760967	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs753683450		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	55	567	0	ENST00000259008.2:c.3440dup	p.Asn1147LysfsTer2	p.N1147Kfs*2	ENST00000259008	NM_032043.2	1147	aat/aaAt																																																																															
AXL	558	MSKCC	GRCh37	19	41744384	41744385	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1450387909		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	161	736	0	ENST00000301178.4:c.1010dup	p.Glu338Ter	p.E338*	ENST00000301178	NM_021913.4	335	ggc/ggCc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971057	21971057	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894094		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	42	423	0	ENST00000304494.5:c.301G>A	p.Gly101Arg	p.G101R	ENST00000304494	NM_000077.4	101	Ggg/Agg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934234	39934234	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs369585835		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	197	763	0	ENST00000378444.4:c.365T>C	p.Met122Thr	p.M122T	ENST00000378444	NM_001123385.1	122	aTg/aCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420203	49420204	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	95	752	0	ENST00000301067.7:c.15545dup	p.Leu5183ProfsTer16	p.L5183Pfs*16	ENST00000301067	NM_003482.3	5182	ggc/ggGc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313250	30313250	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	37	613	1	ENST00000262643.3:c.944A>G	p.Lys315Arg	p.K315R	ENST00000262643	NM_001238.2	315	aAg/aGg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59858254	59858254	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs780020495		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	31	569	1	ENST00000259008.2:c.1741C>T	p.Arg581Ter	p.R581*	ENST00000259008	NM_032043.2	581	Cga/Tga																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943770	71943770	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	49	770	0	ENST00000298229.2:c.1815del	p.Phe605LeufsTer16	p.F605Lfs*16	ENST00000298229	NM_001567.3	605	Ttt/tt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437499	49437499	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs186948725		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	169	713	3	ENST00000301067.7:c.5386C>T	p.Arg1796Trp	p.R1796W	ENST00000301067	NM_003482.3	1796	Cgg/Tgg																																																																															
MGA	23269	MSKCC	GRCh37	15	42059307	42059307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	100	407	0	ENST00000219905.7:c.9027G>T	p.Lys3009Asn	p.K3009N	ENST00000219905	NM_001164273.1	3009	aaG/aaT																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639765	3639765	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1418445974		P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	141	916	0	ENST00000294008.3:c.3874C>T	p.Pro1292Ser	p.P1292S	ENST00000294008	NM_032444.2	1292	Ccc/Tcc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348245	89348245	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	188	815	3	ENST00000301030.4:c.4705A>G	p.Arg1569Gly	p.R1569G	ENST00000301030	NM_001256183.1	1569	Agg/Ggg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30322671	30322671	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	95	649	0	ENST00000322652.5:c.1684A>G	p.Asn562Asp	p.N562D	ENST00000322652	NM_015355.2	562	Aat/Gat																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45423012	45423012	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	103	407	2	ENST00000262160.6:c.116del	p.Lys39SerfsTer7	p.K39Sfs*7	ENST00000262160	NM_005901.5	39	aAg/ag																																																																															
ERF	2077	MSKCC	GRCh37	19	42752972	42752972	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	180	835	0	ENST00000222329.4:c.1292C>A	p.Ser431Ter	p.S431*	ENST00000222329	NM_006494.2	431	tCg/tAg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912892	50912892	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	122	757	0	ENST00000440232.2:c.2123T>C	p.Val708Ala	p.V708A	ENST00000440232	NM_002691.3	708	gTg/gCg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225422475	225422475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	84	421	0	ENST00000264414.4:c.165G>T	p.Glu55Asp	p.E55D	ENST00000264414	NM_003590.4	55	gaG/gaT																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024631	31024632	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	122	612	0	ENST00000375687.4:c.4118_4119del	p.Phe1373CysfsTer6	p.F1373Cfs*6	ENST00000375687	NM_015338.5	1372	acTTtt/actt																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626122	12626123	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	31	399	0	ENST00000251849.4:c.1837_1838del	p.Leu613ThrfsTer19	p.L613Tfs*19	ENST00000251849	NM_002880.3	613	CTa/a																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670539	134670540	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	149	747	0	ENST00000398015.3:c.453dup	p.Gly152TrpfsTer109	p.G152Wfs*109	ENST00000398015	NM_004441.4	150	-/T																																																																															
ATR	545	MSKCC	GRCh37	3	142281731	142281731	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	47	619	0	ENST00000350721.4:c.513G>A	p.Trp171Ter	p.W171*	ENST00000350721	NM_001184.3	171	tgG/tgA																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912291	29912291	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	80	608	0	ENST00000376809.5:c.912del	p.Thr305ProfsTer17	p.T305Pfs*17	ENST00000376809	NM_002116.7	304	Ccc/cc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323279	31323279	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	30	213	0	ENST00000412585.2:c.710T>C	p.Ile237Thr	p.I237T	ENST00000412585	NM_005514.6	237	aTc/aCc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32820949	32820949	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	59	865	0	ENST00000354258.4:c.645del	p.His215GlnfsTer23	p.H215Qfs*23	ENST00000354258	NM_000593.5	215	caC/ca																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821191	32821191	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	135	794	0	ENST00000354258.4:c.403del	p.Val135SerfsTer22	p.V135Sfs*22	ENST00000354258	NM_000593.5	135	Gtc/tc																																																																															
SMO	6608	MSKCC	GRCh37	7	128851863	128851863	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	64	758	0	ENST00000249373.3:c.1937-2A>G		p.X646_splice	ENST00000249373	NM_005631.4	646																																																																																
AGO2	27161	MSKCC	GRCh37	8	141545652	141545652	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	196	735	1	ENST00000220592.5:c.2186A>C	p.Asn729Thr	p.N729T	ENST00000220592	NM_012154.3	729	aAc/aCc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080244	5080244	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	24	245	0	ENST00000381652.3:c.2147T>C	p.Ile716Thr	p.I716T	ENST00000381652	NM_004972.3	716	aTa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0055089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	370	803	0	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0055089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	174	568	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278094	41278094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	178	473	0	ENST00000349496.5:c.1970C>A	p.Ala657Asp	p.A657D	ENST00000349496	NM_001904.3	657	gCt/gAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68950475	68950475	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371711855		P-0055089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	157	603	0	ENST00000288368.4:c.787C>T	p.Arg263Trp	p.R263W	ENST00000288368	NM_024870.2	263	Cgg/Tgg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266046	41266665	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	GAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGTGCAATCCCT	GAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGTGCAATCCCT	-			P-0055089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	85	367	0	ENST00000349496.5:c.47_466del		p.X16_splice	ENST00000349496	NM_001904.3	16	GAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGTGCAATCCCT/-																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266217	41266217	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0055089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	94	470	0	ENST00000349496.5:c.214C>T	p.Gln72Ter	p.Q72*	ENST00000349496	NM_001904.3	72	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105578	27105578	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0055089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	233	682	0	ENST00000324856.7:c.5192del	p.Leu1731Ter	p.L1731*	ENST00000324856	NM_006015.4	1730	aTt/at																																																																															
KIT	3815	MSKCC	GRCh37	4	55604610	55604610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	224	703	0	ENST00000288135.5:c.2818G>A	p.Ala940Thr	p.A940T	ENST00000288135	NM_000222.2	940	Gca/Aca																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177798	56177798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	175	439	0	ENST00000399503.3:c.2771C>T	p.Ser924Leu	p.S924L	ENST00000399503	NM_005921.1	924	tCa/tTa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751420	57751420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	191	538	1	ENST00000274289.3:c.1571C>A	p.Thr524Asn	p.T524N	ENST00000274289	NM_006622.3	524	aCc/aAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0055091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	44	315	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0055091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	74	432	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560460	95560460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	115	580	0	ENST00000343455.3:c.5129C>T	p.Ala1710Val	p.A1710V	ENST00000343455	NM_177438.2	1710	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578217	7578218	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0055091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	146	835	0	ENST00000269305.4:c.631_632del	p.Thr211PhefsTer4	p.T211Ffs*4	ENST00000269305	NM_001126112.2	211	ACt/t																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400765	72400765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	42	301	0	ENST00000357731.5:c.406C>A	p.Gln136Lys	p.Q136K	ENST00000357731	NM_173808.2	136	Caa/Aaa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18650681	18650681	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0055126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	74	276	0	ENST00000266497.5:c.2892A>C	p.Gln964His	p.Q964H	ENST00000266497		964	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0055126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	481	695	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78797019	78797019	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	107	488	0	ENST00000306801.3:c.1132A>C	p.Met378Leu	p.M378L	ENST00000306801	NM_020761.2	378	Atg/Ctg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279605	18279605	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	463	729	0	ENST00000222254.8:c.1878G>C	p.Lys626Asn	p.K626N	ENST00000222254	NM_005027.3	626	aaG/aaC																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212194	36212194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	416	698	1	ENST00000222270.7:c.1945G>T	p.Ala649Ser	p.A649S	ENST00000222270	NM_014727.1	649	Gcc/Tcc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45856356	45856356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	230	790	0	ENST00000391945.4:c.1816G>A	p.Glu606Lys	p.E606K	ENST00000391945	NM_000400.3	606	Gag/Aag																																																																															
KIT	3815	MSKCC	GRCh37	4	55565796	55565796	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0055126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	284	431	0	ENST00000288135.5:c.620C>A	p.Ala207Asp	p.A207D	ENST00000288135	NM_000222.2	207	gCc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112174310	112174310	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0055126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	249	266	0	ENST00000257430.4:c.3019A>T	p.Lys1007Ter	p.K1007*	ENST00000257430	NM_000038.5	1007	Aaa/Taa																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429978	78429978	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	84	344	0	ENST00000370768.2:c.901del	p.Ile301TyrfsTer22	p.I301Yfs*22	ENST00000370768	NM_003902.3	301	Ata/ta																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	155	659	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	71	347	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395204	139395204	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375978224		P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	288	1355	2	ENST00000277541.6:c.5734G>A	p.Asp1912Asn	p.D1912N	ENST00000277541	NM_017617.3	1912	Gac/Aac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288967	212288967	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs537458255		P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	56	531	1	ENST00000342788.4:c.2779C>T	p.Arg927Ter	p.R927*	ENST00000342788	NM_005235.2	927	Cga/Tga																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	183	371	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	148	758	1	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926884	112926884	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	144	700	0	ENST00000351677.2:c.1504T>C	p.Ser502Pro	p.S502P	ENST00000351677	NM_002834.3	502	Tca/Cca																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	119	521	8	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557909	187557909	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs564430066		P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	157	501	1	ENST00000441802.2:c.3802C>T	p.Arg1268Trp	p.R1268W	ENST00000441802	NM_005245.3	1268	Cgg/Tgg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16049853	16049853	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	65	272	0	ENST00000268712.3:c.919del	p.Ile307SerfsTer19	p.I307Sfs*19	ENST00000268712	NM_006311.3	307	Atc/tc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934243	49934243	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1407832113		P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	185	894	8	ENST00000296474.3:c.2264del	p.Gly755ValfsTer19	p.G755Vfs*19	ENST00000296474	NM_002447.2	755	gGt/gt																																																																															
BARD1	580	MSKCC	GRCh37	2	215646084	215646085	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs746325928		P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	105	614	1	ENST00000260947.4:c.513dup	p.Asp172ArgfsTer10	p.D172Rfs*10	ENST00000260947	NM_000465.2	171	-/A																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350311	89350311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	233	880	1	ENST00000301030.4:c.2639C>T	p.Thr880Met	p.T880M	ENST00000301030	NM_001256183.1	880	aCg/aTg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36941109	36941109	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761404285		P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	188	877	2	ENST00000361632.4:c.230G>A	p.Arg77His	p.R77H	ENST00000361632		77	cGt/cAt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	182	886	5	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	261	1282	2	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047888	180047888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	228	1239	1	ENST00000261937.6:c.2287G>A	p.Val763Met	p.V763M	ENST00000261937	NM_182925.4	763	Gtg/Atg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262102	10262102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	193	705	2	ENST00000340748.4:c.2189G>A	p.Arg730His	p.R730H	ENST00000340748		730	cGc/cAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	132	709	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399315	139399315	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369467132		P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	253	1091	1	ENST00000277541.6:c.4828G>A	p.Ala1610Thr	p.A1610T	ENST00000277541	NM_017617.3	1610	Gca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	184	902	3	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68989706	68989706	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	98	510	0	ENST00000288368.4:c.1642+2T>C		p.X548_splice	ENST00000288368	NM_024870.2	548																																																																																
WHSC1L1	54904	MSKCC	GRCh37	8	38146944	38146945	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	147	704	0	ENST00000317025.8:c.3197dup	p.Asn1066LysfsTer14	p.N1066Kfs*14	ENST00000317025	NM_023034.1	1066	aac/aaAc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141595382	141595382	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	190	903	1	ENST00000220592.5:c.51del	p.Ile18SerfsTer121	p.I18Sfs*121	ENST00000220592	NM_012154.3	17	ccC/cc																																																																															
INSR	3643	MSKCC	GRCh37	19	7117191	7117191	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	185	819	2	ENST00000302850.5:c.4025del	p.Gly1342AlafsTer23	p.G1342Afs*23	ENST00000302850	NM_000208.2	1342	gGc/gc																																																																															
CASP8	841	MSKCC	GRCh37	2	202136260	202136262	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs763516126		P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	118	512	0	ENST00000358485.4:c.509_511del	p.Glu170del	p.E170del	ENST00000358485	NM_001080125.1	168	tcAGAa/tca																																																																															
ATR	545	MSKCC	GRCh37	3	142268420	142268420	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	54	353	0	ENST00000350721.4:c.3072T>G	p.Asn1024Lys	p.N1024K	ENST00000350721	NM_001184.3	1024	aaT/aaG																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99156092	99156092	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1247349502		P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	116	744	0	ENST00000074304.5:c.772G>A	p.Val258Met	p.V258M	ENST00000074304	NM_001134224.1	258	Gtg/Atg																																																																															
SETD8	387893	MSKCC	GRCh37	12	123889485	123889485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	56	306	0	ENST00000330479.4:c.712C>T	p.Arg238Trp	p.R238W	ENST00000330479	NM_020382.3	238	Cgg/Tgg																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64288881	64288881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369392023		P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	117	598	0	ENST00000370651.3:c.277C>T	p.Arg93Cys	p.R93C	ENST00000370651	NM_003463.4	93	Cgt/Tgt																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800903	120800903	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	182	894	1	ENST00000257552.2:c.345del	p.Leu116CysfsTer3	p.L116Cfs*3	ENST00000257552	NM_002442.3	115	ggG/gg																																																																															
RARA	5914	MSKCC	GRCh37	17	38510570	38510570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757750800		P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	141	652	0	ENST00000254066.5:c.824C>T	p.Thr275Met	p.T275M	ENST00000254066	NM_000964.3	275	aCg/aTg																																																																															
AKT2	208	MSKCC	GRCh37	19	40747868	40747868	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752597471		P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	189	926	3	ENST00000392038.2:c.550C>T	p.Arg184Trp	p.R184W	ENST00000392038	NM_001626.4	184	Cgg/Tgg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324464	31324464	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1168937188		P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	51	117	0	ENST00000412585.2:c.343+1G>A		p.X115_splice	ENST00000412585	NM_005514.6	115																																																																																
ERRFI1	54206	MSKCC	GRCh37	1	8074276	8074276	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	118	598	0	ENST00000377482.5:c.383del	p.Pro128LeufsTer3	p.P128Lfs*3	ENST00000377482	NM_018948.3	128	cCt/ct																																																																															
MTOR	2475	MSKCC	GRCh37	1	11264699	11264699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	129	821	0	ENST00000361445.4:c.3863G>A	p.Ser1288Asn	p.S1288N	ENST00000361445	NM_004958.3	1288	aGc/aAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101052	27101052	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769572233		P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	193	886	0	ENST00000324856.7:c.4334G>A	p.Arg1445His	p.R1445H	ENST00000324856	NM_006015.4	1445	cGc/cAc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	498202	498202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	114	505	0	ENST00000399788.2:c.56G>A	p.Cys19Tyr	p.C19Y	ENST00000399788	NM_001042603.1	19	tGc/tAc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21555718	21555718	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	168	900	1	ENST00000382592.4:c.2552G>T	p.Gly851Val	p.G851V	ENST00000382592	NM_014572.2	851	gGg/gTg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061826	38061826	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	213	981	0	ENST00000250448.2:c.163A>G	p.Thr55Ala	p.T55A	ENST00000250448	NM_004496.3	55	Acg/Gcg																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30133175	30133175	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771152806		P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	123	569	0	ENST00000263025.4:c.323G>A	p.Arg108Gln	p.R108Q	ENST00000263025	NM_002746.2	108	cGg/cAg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7976137	7976137	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	210	806	1	ENST00000319144.4:c.2058del	p.Tyr687ThrfsTer8	p.Y687Tfs*8	ENST00000319144	NM_001139.2	686	ccC/cc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619203	37619203	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	144	706	0	ENST00000447079.4:c.882del	p.Tyr295ThrfsTer43	p.Y295Tfs*43	ENST00000447079	NM_015083.1	293	agC/ag																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621896	1621896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	272	1193	0	ENST00000344749.5:c.896C>T	p.Ala299Val	p.A299V	ENST00000344749	NM_001136139.2	299	gCc/gTc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082465	16082465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	200	1042	0	ENST00000281043.3:c.279G>T	p.Glu93Asp	p.E93D	ENST00000281043	NM_005378.4	93	gaG/gaT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248468	212248468	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	104	451	0	ENST00000342788.4:c.3799T>G	p.Phe1267Val	p.F1267V	ENST00000342788	NM_005235.2	1267	Ttt/Gtt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9543658	9543658	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368217948		P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	156	434	0	ENST00000353224.5:c.1496G>A	p.Arg499Gln	p.R499Q	ENST00000353224	NM_177990.2	499	cGg/cAg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755546	57755546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	154	785	0	ENST00000274289.3:c.241C>T	p.Arg81Cys	p.R81C	ENST00000274289	NM_006622.3	81	Cgc/Tgc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057035	180057035	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753792784		P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	240	1171	2	ENST00000261937.6:c.584C>T	p.Thr195Met	p.T195M	ENST00000261937	NM_182925.4	195	aCg/aTg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33286844	33286844	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	157	765	0	ENST00000374542.5:c.2093T>C	p.Leu698Pro	p.L698P	ENST00000374542	NM_001141970.1	698	cTc/cCc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891244	101891244	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	83	431	0	ENST00000374994.4:c.205A>G	p.Ser69Gly	p.S69G	ENST00000374994	NM_004612.2	69	Agc/Ggc																																																																															
ABL1	25	MSKCC	GRCh37	9	133759764	133759764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	185	872	0	ENST00000318560.5:c.2087G>A	p.Ser696Asn	p.S696N	ENST00000318560	NM_005157.4	696	aGc/aAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0055210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	52	336	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0055210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	258	875	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0055210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	94	406	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175749	112175750	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0055210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	57	287	0	ENST00000257430.4:c.4459dup	p.Thr1487AsnfsTer27	p.T1487Nfs*27	ENST00000257430	NM_000038.5	1486	-/A																																																																															
APC	324	MSKCC	GRCh37	5	112174214	112174214	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0055210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	51	302	0	ENST00000257430.4:c.2923A>T	p.Lys975Ter	p.K975*	ENST00000257430	NM_000038.5	975	Aaa/Taa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121913255		P-0055260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	428	775	0	ENST00000369535.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0055260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	637	822	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112173696	112173697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0055260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	118	486	0	ENST00000257430.4:c.2406dup	p.Thr803HisfsTer5	p.T803Hfs*5	ENST00000257430	NM_000038.5	802	gac/gaCc																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0055260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	132	466	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
IRF4	3662	MSKCC	GRCh37	6	407557	407557	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	150	600	0	ENST00000380956.4:c.1315G>T	p.Asp439Tyr	p.D439Y	ENST00000380956	NM_001195286.1	439	Gat/Tat																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0055260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	384	584	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																															
MED12	9968	MSKCC	GRCh37	X	70339940	70339940	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	232	409	0	ENST00000374080.3:c.473G>T	p.Trp158Leu	p.W158L	ENST00000374080		158	tGg/tTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	109	368	1	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	220	895	2	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505471	25505471	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771499883		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	49	764	0	ENST00000264709.3:c.287G>A	p.Arg96Gln	p.R96Q	ENST00000264709	NM_175629.2	96	cGg/cAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819294	3819294	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61753380		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	48	637	1	ENST00000262367.5:c.2941G>A	p.Ala981Thr	p.A981T	ENST00000262367	NM_004380.2	981	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	19	358	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	68	293	4	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	518	852	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097621	27097622	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	168	496	0	ENST00000324856.7:c.3216dup	p.Trp1073MetfsTer32	p.W1073Mfs*32	ENST00000324856	NM_006015.4	1070	-/A																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120232	70120232	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	250	716	0	ENST00000245479.2:c.1234C>T	p.Gln412Ter	p.Q412*	ENST00000245479	NM_000346.3	412	Cag/Tag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	44	578	5	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256769	19256769	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	218	786	2	ENST00000162023.5:c.944del	p.Pro315GlnfsTer?	p.P315Qfs*?	ENST00000162023		315	cCa/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578213	7578214	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-	rs1131691030		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	278	710	0	ENST00000269305.4:c.635_636del	p.Phe212SerfsTer3	p.F212Sfs*3	ENST00000269305	NM_001126112.2	212	tTT/t																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	88	386	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085942	16085942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	229	566	1	ENST00000281043.3:c.1118G>A	p.Arg373Gln	p.R373Q	ENST00000281043	NM_005378.4	373	cGa/cAa																																																																															
MET	4233	MSKCC	GRCh37	7	116435984	116435984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	181	610	1	ENST00000397752.3:c.3979C>T	p.Arg1327Cys	p.R1327C	ENST00000397752	NM_000245.2	1327	Cgc/Tgc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852608	63852608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	136	537	0	ENST00000279873.7:c.3386G>A	p.Gly1129Glu	p.G1129E	ENST00000279873	NM_032199.2	1129	gGa/gAa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	150	328	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	191	675	2	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17937659	17937659	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144968714		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	312	792	1	ENST00000458235.1:c.3268G>A	p.Ala1090Thr	p.A1090T	ENST00000458235	NM_000215.3	1090	Gcc/Acc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	238	715	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	287	831	6	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																															
ATR	545	MSKCC	GRCh37	3	142268379	142268380	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	45	394	2	ENST00000350721.4:c.3112dup	p.Ser1038PhefsTer11	p.S1038Ffs*11	ENST00000350721	NM_001184.3	1038	tct/tTct																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	299	1007	6	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	313	910	1	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct																																																																															
MYC	4609	MSKCC	GRCh37	8	128752960	128752960	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	157	503	0	ENST00000377970.2:c.1121A>G	p.His374Arg	p.H374R	ENST00000377970	NM_002467.4	374	cAc/cGc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	180	501	0	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	335	458	13	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	658	824	6	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
BARD1	580	MSKCC	GRCh37	2	215646085	215646085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	109	468	3	ENST00000260947.4:c.513del	p.Asp172MetfsTer40	p.D172Mfs*40	ENST00000260947	NM_000465.2	171	aaA/aa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772715	135772715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	157	529	0	ENST00000298552.3:c.2831C>T	p.Ala944Val	p.A944V	ENST00000298552	NM_001162426.1	944	gCa/gTa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	182	506	10	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882050	36882050	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	266	882	1	ENST00000358127.4:c.963del	p.Ala322LeufsTer11	p.A322Lfs*11	ENST00000358127	NM_001280556.1	321	ccC/cc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	187	462	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831357	72831358	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTG	rs552138038		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	78	401	2	ENST00000268489.5:c.5221_5223dup	p.Gln1741dup	p.Q1741dup	ENST00000268489	NM_006885.3	1741	-/CAA																																																																															
MTOR	2475	MSKCC	GRCh37	1	11317160	11317160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	285	724	2	ENST00000361445.4:c.334C>T	p.Arg112Trp	p.R112W	ENST00000361445	NM_004958.3	112	Cgg/Tgg																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073804	8073804	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	102	357	0	ENST00000377482.5:c.855del	p.Arg286GlufsTer9	p.R286Efs*9	ENST00000377482	NM_018948.3	285	ccC/cc																																																																															
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	217	598	1	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																															
PARP1	142	MSKCC	GRCh37	1	226567646	226567647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1159330096		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	220	680	0	ENST00000366794.5:c.1519dup	p.Ser507LysfsTer14	p.S507Kfs*14	ENST00000366794	NM_001618.3	507	agc/aAgc																																																																															
RARA	5914	MSKCC	GRCh37	17	38512401	38512402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs745553450		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	212	736	3	ENST00000254066.5:c.1319dup	p.Pro441AlafsTer5	p.P441Afs*5	ENST00000254066	NM_000964.3	438	gcc/gCcc																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	96	466	1	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287294	46287294	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	28	550	0	ENST00000334344.6:c.5239G>T	p.Gly1747Ter	p.G1747*	ENST00000334344	NM_152641.2	1747	Gga/Tga																																																																															
MSH2	4436	MSKCC	GRCh37	2	47639588	47639588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	66	311	0	ENST00000233146.2:c.687del	p.Ala230LeufsTer16	p.A230Lfs*16	ENST00000233146	NM_000251.2	227	agA/ag																																																																															
FANCC	2176	MSKCC	GRCh37	9	97873817	97873817	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	72	829	2	ENST00000289081.3:c.1257del	p.Thr420ArgfsTer27	p.T420Rfs*27	ENST00000289081	NM_000136.2	419	ccC/cc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630605	187630605	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	155	598	0	ENST00000441802.2:c.377del	p.Asn126IlefsTer20	p.N126Ifs*20	ENST00000441802	NM_005245.3	126	aAt/at																																																																															
PMS2	5395	MSKCC	GRCh37	7	6043349	6043349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	12	183	1	ENST00000265849.7:c.325del	p.Glu109LysfsTer3	p.E109Kfs*3	ENST00000265849	NM_000535.5	109	Gaa/aa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259729	16259729	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758740337		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	191	532	0	ENST00000375759.3:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000375759	NM_015001.2	2332	Cgc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	177	685	4	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804358	46804358	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139475791		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	215	676	1	ENST00000290295.7:c.649C>T	p.Arg217Cys	p.R217C	ENST00000290295	NM_006361.5	217	Cgc/Tgc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25497824	25497824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	239	815	0	ENST00000264709.3:c.625C>T	p.Arg209Cys	p.R209C	ENST00000264709	NM_175629.2	209	Cgc/Tgc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16052795	16052795	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	37	354	0	ENST00000268712.3:c.879del	p.Phe293LeufsTer33	p.F293Lfs*33	ENST00000268712	NM_006311.3	293	ttT/tt																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15821896	15821896	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	57	328	1	ENST00000307771.7:c.294del	p.Lys98AsnfsTer10	p.K98Nfs*10	ENST00000307771	NM_005089.3	97	Aaa/aa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	222	463	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1096	68	1047	1	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194905	29194905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375453930		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	320	836	0	ENST00000240100.2:c.823C>T	p.Arg275Cys	p.R275C	ENST00000240100	NM_001394.6	275	Cgc/Tgc																																																																															
POLE	5426	MSKCC	GRCh37	12	133240613	133240613	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201115064		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	171	602	3	ENST00000320574.5:c.2683G>A	p.Ala895Thr	p.A895T	ENST00000320574	NM_006231.2	895	Gcc/Acc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351595	89351595	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	213	736	2	ENST00000301030.4:c.1355del	p.Asn452IlefsTer3	p.N452Ifs*3	ENST00000301030	NM_001256183.1	452	aAt/at																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66782074	66782075	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	115	299	0	ENST00000307102.5:c.1047_1048del	p.Arg349SerfsTer16	p.R349Sfs*16	ENST00000307102	NM_002755.3	347	gcAGag/gcag																																																																															
JUN	3725	MSKCC	GRCh37	1	59248285	59248285	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	69	225	1	ENST00000371222.2:c.458del	p.Gly153AlafsTer29	p.G153Afs*29	ENST00000371222	NM_002228.3	153	gGc/gc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134575	2134575	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142848358		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	313	1056	3	ENST00000219476.3:c.4352G>A	p.Arg1451His	p.R1451H	ENST00000219476	NM_000548.3	1451	cGc/cAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	138	415	14	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399158	139399158	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774808496		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	268	833	0	ENST00000277541.6:c.4985G>A	p.Arg1662Gln	p.R1662Q	ENST00000277541	NM_017617.3	1662	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218451	36218451	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	282	916	1	ENST00000222270.7:c.4235del	p.Gly1412AlafsTer10	p.G1412Afs*10	ENST00000222270	NM_014727.1	1410	caG/ca																																																																															
ERF	2077	MSKCC	GRCh37	19	42752805	42752805	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767131852		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	350	983	0	ENST00000222329.4:c.1459C>T	p.Arg487Cys	p.R487C	ENST00000222329	NM_006494.2	487	Cgc/Tgc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371824	55371824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	144	209	0	ENST00000297316.4:c.514G>A	p.Gly172Ser	p.G172S	ENST00000297316	NM_022454.3	172	Ggc/Agc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38277149	38277149	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752627281		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	231	677	1	ENST00000425967.3:c.1279G>A	p.Val427Ile	p.V427I	ENST00000425967	NM_001174067.1	427	Gtc/Atc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224678	36224678	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752822802		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	267	857	0	ENST00000222270.7:c.7064G>A	p.Arg2355Gln	p.R2355Q	ENST00000222270	NM_014727.1	2355	cGg/cAg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164464	36164464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	165	495	0	ENST00000300305.3:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000300305		471	Cgc/Tgc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986730	36986730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	36	101	0	ENST00000354822.5:c.959C>T	p.Ala320Val	p.A320V	ENST00000354822	NM_001079668.2	320	gCg/gTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245525	46245525	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	80	359	0	ENST00000334344.6:c.3619C>T	p.Gln1207Ter	p.Q1207*	ENST00000334344	NM_152641.2	1207	Cag/Tag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741892	145741892	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	305	891	0	ENST00000428558.2:c.611C>G	p.Ala204Gly	p.A204G	ENST00000428558	NM_004260.3	204	gCc/gGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434863	49434864	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	299	913	1	ENST00000301067.7:c.6689dup	p.Pro2231ThrfsTer12	p.P2231Tfs*12	ENST00000301067	NM_003482.3	2230	cca/ccCa																																																																															
TET2	54790	MSKCC	GRCh37	4	106162508	106162508	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	53	235	0	ENST00000380013.4:c.3426del	p.Asp1143MetfsTer9	p.D1143Mfs*9	ENST00000380013	NM_001127208.2	1141	gAa/ga																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986723	36986723	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1465370806		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	36	82	0	ENST00000354822.5:c.966C>G	p.His322Gln	p.H322Q	ENST00000354822	NM_001079668.2	322	caC/caG																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151871274	151871274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	112	492	0	ENST00000262189.6:c.9316G>A	p.Gly3106Ser	p.G3106S	ENST00000262189	NM_170606.2	3106	Ggt/Agt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295788	212295788	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1412193732		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	71	521	1	ENST00000342788.4:c.2525G>A	p.Arg842Gln	p.R842Q	ENST00000342788	NM_005235.2	842	cGg/cAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11118662	11118662	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1486794288		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	267	759	1	ENST00000344626.4:c.2086G>A	p.Asp696Asn	p.D696N	ENST00000344626	NM_003072.3	696	Gat/Aat																																																																															
SMO	6608	MSKCC	GRCh37	7	128843323	128843323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	309	961	0	ENST00000249373.3:c.430C>T	p.Arg144Cys	p.R144C	ENST00000249373	NM_005631.4	144	Cgt/Tgt																																																																															
SESN3	143686	MSKCC	GRCh37	11	94926668	94926668	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1407767283		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	16	447	0	ENST00000536441.1:c.97T>C	p.Ser33Pro	p.S33P	ENST00000536441	NM_144665.3	33	Tct/Cct																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437565	52437565	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	239	776	1	ENST00000460680.1:c.1596del	p.Phe532LeufsTer39	p.F532Lfs*39	ENST00000460680	NM_004656.3	532	ttT/tt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69002852	69002852	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	60	301	0	ENST00000288368.4:c.2152T>C	p.Cys718Arg	p.C718R	ENST00000288368	NM_024870.2	718	Tgc/Cgc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618427	37618427	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750600272		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	168	493	0	ENST00000447079.4:c.103C>T	p.Arg35Cys	p.R35C	ENST00000447079	NM_015083.1	35	Cgt/Tgt																																																																															
IRF4	3662	MSKCC	GRCh37	6	397141	397141	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs756699452		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	202	512	0	ENST00000380956.4:c.526C>T	p.Arg176Ter	p.R176*	ENST00000380956	NM_001195286.1	176	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29670055	29670055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	55	386	0	ENST00000358273.4:c.7091G>A	p.Arg2364Gln	p.R2364Q	ENST00000358273	NM_001042492.2	2364	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229255	36229255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	273	878	0	ENST00000222270.7:c.7945C>T	p.Arg2649Cys	p.R2649C	ENST00000222270	NM_014727.1	2649	Cgc/Tgc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134644661	134644661	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376895227		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	149	471	2	ENST00000398015.3:c.62C>T	p.Thr21Met	p.T21M	ENST00000398015	NM_004441.4	21	aCg/aTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261827	16261827	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	201	709	0	ENST00000375759.3:c.9092C>A	p.Pro3031His	p.P3031H	ENST00000375759	NM_015001.2	3031	cCc/cAc																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39322656	39322656	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	90	560	0	ENST00000373001.3:c.336C>A	p.Phe112Leu	p.F112L	ENST00000373001	NM_022157.3	112	ttC/ttA																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166208	118166209	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	143	414	0	ENST00000369448.3:c.720_721del	p.Gly241ArgfsTer42	p.G241Rfs*42	ENST00000369448	NM_017709.3	240	AGa/a																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551728	150551728	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	152	420	0	ENST00000369026.2:c.279del	p.Ala94ArgfsTer150	p.A94Rfs*150	ENST00000369026	NM_021960.4	93	ccC/cc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162741873	162741873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	201	506	0	ENST00000367921.3:c.1564G>A	p.Ala522Thr	p.A522T	ENST00000367921	NM_006182.2	522	Gca/Aca																																																																															
FH	2271	MSKCC	GRCh37	1	241680616	241680616	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	52	282	0	ENST00000366560.3:c.133G>A	p.Ala45Thr	p.A45T	ENST00000366560	NM_000143.3	45	Gca/Aca																																																																															
TET1	80312	MSKCC	GRCh37	10	70446348	70446348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	177	564	0	ENST00000373644.4:c.5288C>T	p.Thr1763Ile	p.T1763I	ENST00000373644	NM_030625.2	1763	aCa/aTa																																																																															
LMO1	4004	MSKCC	GRCh37	11	8248625	8248625	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	246	828	0	ENST00000335790.3:c.262T>G	p.Cys88Gly	p.C88G	ENST00000335790	NM_002315.2	88	Tgt/Ggt																																																																															
BIRC3	330	MSKCC	GRCh37	11	102207729	102207729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	74	389	0	ENST00000263464.3:c.1711C>T	p.Pro571Ser	p.P571S	ENST00000263464	NM_001165.4	571	Cct/Tct																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307289	118307289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	38	91	0	ENST00000534358.1:c.62G>C	p.Gly21Ala	p.G21A	ENST00000534358	NM_005933.3	21	gGc/gCc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118365463	118365463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	36	314	0	ENST00000534358.1:c.5344C>T	p.Pro1782Ser	p.P1782S	ENST00000534358	NM_005933.3	1782	Cca/Tca																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944766	31944766	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	24	314	0	ENST00000340398.3:c.335T>A	p.Ile112Asn	p.I112N	ENST00000340398	NM_001013699.2	112	aTc/aAc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245211	46245211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	190	546	0	ENST00000334344.6:c.3305C>T	p.Ala1102Val	p.A1102V	ENST00000334344	NM_152641.2	1102	gCc/gTc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285880	46285880	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	67	396	0	ENST00000334344.6:c.5147+1G>T		p.X1716_splice	ENST00000334344	NM_152641.2	1716																																																																																
DIS3	22894	MSKCC	GRCh37	13	73351563	73351563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	104	212	0	ENST00000377767.4:c.649G>A	p.Glu217Lys	p.E217K	ENST00000377767	NM_014953.3	217	Gaa/Aaa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436401	110436401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs76110593		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	477	804	0	ENST00000375856.3:c.2000G>A	p.Ser667Asn	p.S667N	ENST00000375856	NM_003749.2	667	aGc/aAc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95590650	95590652	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	54	318	0	ENST00000343455.3:c.1257_1259del	p.Asp419del	p.D419del	ENST00000343455	NM_177438.2	419	gaTGAg/gag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465564	99465564	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	195	586	0	ENST00000268035.6:c.2389A>G	p.Thr797Ala	p.T797A	ENST00000268035	NM_000875.3	797	Aca/Gca																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348767	11348767	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	144	418	0	ENST00000332029.2:c.569A>G	p.Asn190Ser	p.N190S	ENST00000332029	NM_003745.1	190	aAc/aGc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56832428	56832428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	79	400	2	ENST00000308159.5:c.338C>T	p.Ala113Val	p.A113V	ENST00000308159	NM_014669.4	113	gCc/gTc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349735	89349735	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	222	721	0	ENST00000301030.4:c.3215A>G	p.Lys1072Arg	p.K1072R	ENST00000301030	NM_001256183.1	1072	aAa/aGa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15965522	15965522	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	103	370	0	ENST00000268712.3:c.5284A>G	p.Arg1762Gly	p.R1762G	ENST00000268712	NM_006311.3	1762	Aga/Gga																																																																															
RARA	5914	MSKCC	GRCh37	17	38506115	38506115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	225	727	2	ENST00000254066.5:c.407C>T	p.Thr136Ile	p.T136I	ENST00000254066	NM_000964.3	136	aCc/aTc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40854893	40854893	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	140	497	0	ENST00000428826.2:c.2183+2T>C		p.X728_splice	ENST00000428826		728																																																																																
EZH1	2145	MSKCC	GRCh37	17	40870532	40870532	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	248	643	0	ENST00000428826.2:c.871C>A	p.Leu291Met	p.L291M	ENST00000428826		291	Ctg/Atg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41209133	41209133	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs886040279		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	183	571	0	ENST00000357654.3:c.5213del	p.Gly1738GlufsTer27	p.G1738Efs*27	ENST00000357654	NM_007294.3	1738	gGa/ga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119945	70119945	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	176	570	0	ENST00000245479.2:c.947del	p.Thr316ArgfsTer67	p.T316Rfs*67	ENST00000245479	NM_000346.3	316	aCg/ag																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4110533	4110533	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	277	707	0	ENST00000262948.5:c.424del	p.Glu142ArgfsTer18	p.E142Rfs*18	ENST00000262948	NM_030662.3	142	Gag/ag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610099	10610099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370296794		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	231	786	1	ENST00000171111.5:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000171111	NM_203500.1	204	cGg/cAg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17941392	17941392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	253	694	1	ENST00000458235.1:c.3016C>T	p.Arg1006Cys	p.R1006C	ENST00000458235	NM_000215.3	1006	Cgc/Tgc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18974379	18974379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	204	667	1	ENST00000262803.5:c.2733G>A	p.Met911Ile	p.M911I	ENST00000262803	NM_002911.3	911	atG/atA																																																																															
AKT2	208	MSKCC	GRCh37	19	40747946	40747946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	219	699	1	ENST00000392038.2:c.472C>A	p.Leu158Ile	p.L158I	ENST00000392038	NM_001626.4	158	Ctt/Att																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867339	45867339	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	274	964	0	ENST00000391945.4:c.854A>G	p.Tyr285Cys	p.Y285C	ENST00000391945	NM_000400.3	285	tAc/tGc																																																																															
RRAS	6237	MSKCC	GRCh37	19	50143325	50143325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	73	106	0	ENST00000246792.3:c.31C>T	p.Arg11Trp	p.R11W	ENST00000246792	NM_006270.3	11	Cgg/Tgg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082882	16082882	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	45	146	0	ENST00000281043.3:c.700del	p.Val234SerfsTer27	p.V234Sfs*27	ENST00000281043	NM_005378.4	232	ccG/cc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026218	48026218	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	105	410	0	ENST00000234420.5:c.1096T>C	p.Tyr366His	p.Y366H	ENST00000234420	NM_000179.2	366	Tat/Cat																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026820	48026821	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	92	439	0	ENST00000234420.5:c.1699_1700del	p.Lys567ValfsTer9	p.K567Vfs*9	ENST00000234420	NM_000179.2	566	ggAAag/ggag																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030797	48030797	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	55	330	1	ENST00000234420.5:c.3416del	p.Gly1139AlafsTer6	p.G1139Afs*6	ENST00000234420	NM_000179.2	1137	atG/at																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095537	178095540	+	frameshift_variant	Frame_Shift_Del	DEL	CTTA	CTTA	-	rs748937667		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	51	298	0	ENST00000397062.3:c.1791_1794del	p.Ser597ArgfsTer14	p.S597Rfs*14	ENST00000397062	NM_006164.4	597	agTAAG/ag																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735321	204735321	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	98	287	0	ENST00000302823.3:c.122C>A	p.Ala41Asp	p.A41D	ENST00000302823	NM_005214.4	41	gCc/gAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212576848	212576848	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	24	392	0	ENST00000342788.4:c.1051A>G	p.Ser351Gly	p.S351G	ENST00000342788	NM_005235.2	351	Agt/Ggt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663271	227663271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	259	684	0	ENST00000305123.5:c.184C>T	p.Arg62Cys	p.R62C	ENST00000305123	NM_005544.2	62	Cgc/Tgc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523292	9523292	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	196	533	0	ENST00000353224.5:c.1945del	p.Leu649SerfsTer15	p.L649Sfs*15	ENST00000353224	NM_177990.2	649	Ctc/tc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46268687	46268687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	174	536	0	ENST00000371998.3:c.2972T>C	p.Met991Thr	p.M991T	ENST00000371998		991	aTg/aCg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171734	36171734	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	145	458	0	ENST00000300305.3:c.831del	p.Pro278ArgfsTer33	p.P278Rfs*33	ENST00000300305		277	ccA/cc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12647769	12647769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	67	368	0	ENST00000251849.4:c.611G>A	p.Ser204Asn	p.S204N	ENST00000251849	NM_002880.3	204	aGt/aAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715616	30715616	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	93	254	0	ENST00000359013.4:c.1349T>C	p.Met450Thr	p.M450T	ENST00000359013	NM_001024847.2	450	aTg/aCg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067452	37067452	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	408	593	0	ENST00000231790.2:c.1363del	p.Thr455LeufsTer36	p.T455Lfs*36	ENST00000231790	NM_000249.3	455	Act/ct																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278164	41278165	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	130	474	0	ENST00000349496.5:c.2046_2047del	p.Phe683GlnfsTer9	p.F683Qfs*9	ENST00000349496	NM_001904.3	680	agCTct/agct																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164819	47164819	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	112	340	0	ENST00000409792.3:c.1307G>T	p.Arg436Met	p.R436M	ENST00000409792	NM_014159.6	436	aGg/aTg																																																																															
ATR	545	MSKCC	GRCh37	3	142217599	142217599	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	59	445	1	ENST00000350721.4:c.5398T>C	p.Trp1800Arg	p.W1800R	ENST00000350721	NM_001184.3	1800	Tgg/Cgg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806249	1806249	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	209	712	0	ENST00000260795.2:c.1266+2T>C		p.X422_splice	ENST00000260795		422																																																																																
KIT	3815	MSKCC	GRCh37	4	55597585	55597585	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	18	349	0	ENST00000288135.5:c.2233G>T	p.Gly745Cys	p.G745C	ENST00000288135	NM_000222.2	745	Ggc/Tgc																																																																															
SDHA	6389	MSKCC	GRCh37	5	223658	223658	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	121	416	0	ENST00000264932.6:c.125G>T	p.Arg42Met	p.R42M	ENST00000264932	NM_004168.2	42	aGg/aTg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526637	31526637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	265	642	2	ENST00000344624.3:c.403G>A	p.Ala135Thr	p.A135T	ENST00000344624		135	Gca/Aca																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38963030	38963030	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	14	297	0	ENST00000357387.3:c.1514A>G	p.His505Arg	p.H505R	ENST00000357387	NM_152756.3	505	cAc/cGc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149433789	149433789	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs113928549		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	43	829	0	ENST00000286301.3:c.2764-2A>G		p.X922_splice	ENST00000286301	NM_005211.3	922																																																																																
HIST1H3G	8355	MSKCC	GRCh37	6	26271549	26271549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	161	561	0	ENST00000305910.3:c.64G>A	p.Ala22Thr	p.A22T	ENST00000305910	NM_003534.2	22	Gcc/Acc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680224	30680224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	252	777	0	ENST00000376406.3:c.1495G>A	p.Val499Met	p.V499M	ENST00000376406	NM_014641.2	499	Gtg/Atg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287482	33287482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	182	675	2	ENST00000374542.5:c.1615G>A	p.Ala539Thr	p.A539T	ENST00000374542	NM_001141970.1	539	Gcc/Acc																																																																															
CDK6	1021	MSKCC	GRCh37	7	92247441	92247441	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	23	291	0	ENST00000265734.4:c.779A>G	p.Gln260Arg	p.Q260R	ENST00000265734	NM_001259.6	260	cAa/cGa																																																																															
MET	4233	MSKCC	GRCh37	7	116435790	116435790	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1263785859		P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	178	582	0	ENST00000397752.3:c.3880G>A	p.Val1294Ile	p.V1294I	ENST00000397752	NM_000245.2	1294	Gtt/Att																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853377	151853377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	160	496	0	ENST00000262189.6:c.11725C>A	p.Pro3909Thr	p.P3909T	ENST00000262189	NM_170606.2	3909	Cct/Act																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133879	38133879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	260	749	0	ENST00000317025.8:c.4007G>A	p.Cys1336Tyr	p.C1336Y	ENST00000317025	NM_023034.1	1336	tGt/tAt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38139082	38139082	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	55	406	0	ENST00000317025.8:c.3521A>G	p.Tyr1174Cys	p.Y1174C	ENST00000317025	NM_023034.1	1174	tAc/tGc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38274872	38274872	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	191	659	1	ENST00000425967.3:c.1708G>T	p.Gly570Trp	p.G570W	ENST00000425967	NM_001174067.1	570	Ggg/Tgg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891293	101891293	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	108	549	0	ENST00000374994.4:c.254T>C	p.Val85Ala	p.V85A	ENST00000374994	NM_004612.2	85	gTa/gCa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399351	139399351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	279	1020	1	ENST00000277541.6:c.4792C>A	p.Arg1598Ser	p.R1598S	ENST00000277541	NM_017617.3	1598	Cgc/Agc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405678	139405678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	265	946	2	ENST00000277541.6:c.2513G>A	p.Cys838Tyr	p.C838Y	ENST00000277541	NM_017617.3	838	tGc/tAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413175	139413175	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	293	935	0	ENST00000277541.6:c.967T>C	p.Cys323Arg	p.C323R	ENST00000277541	NM_017617.3	323	Tgt/Cgt																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317466	1317466	+	downstream_gene_variant	3'Flank	DEL	G	G	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	279	727	0				ENST00000381566																																																																																		
ARAF	369	MSKCC	GRCh37	X	47430792	47430792	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	345	784	0	ENST00000377045.4:c.1757T>C	p.Leu586Ser	p.L586S	ENST00000377045	NM_001654.4	586	tTg/tCg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245093	53245093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	242	781	1	ENST00000375401.3:c.847G>A	p.Val283Met	p.V283M	ENST00000375401	NM_004187.3	283	Gtg/Atg																																																																															
TCEB1	6921	MSKCC	GRCh37	8	74868165	74868165	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0055274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	27	132	0	ENST00000284811.8:c.129del	p.Ala44ProfsTer3	p.A44Pfs*3	ENST00000284811		43	aaA/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0055331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	512	1579	3	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0055331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	266	464	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0055331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	123	471	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112154942	112154942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779780		P-0055331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	356	1101	0	ENST00000257430.4:c.1213C>T	p.Arg405Ter	p.R405*	ENST00000257430	NM_000038.5	405	Cga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467677	66467677	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1343594860		P-0055331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	56	415	3	ENST00000273854.3:c.592G>A	p.Glu198Lys	p.E198K	ENST00000273854	NM_004439.5	198	Gag/Aag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119776	70119776	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	462	910	1	ENST00000245479.2:c.779del	p.Pro260GlnfsTer19	p.P260Qfs*19	ENST00000245479	NM_000346.3	260	Cca/ca																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120511	70120511	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0055331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	467	1423	1	ENST00000245479.2:c.1513C>T	p.Gln505Ter	p.Q505*	ENST00000245479	NM_000346.3	505	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112173644	112173648	+	frameshift_variant	Frame_Shift_Del	DEL	CATCG	CATCG	-			P-0055331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	116	362	0	ENST00000257430.4:c.2353_2357del	p.His785Ter	p.H785*	ENST00000257430	NM_000038.5	785	CATCGt/t																																																																															
ETV1	2115	MSKCC	GRCh37	7	13978873	13978873	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0055331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	144	359	0	ENST00000405192.2:c.236-2A>C		p.X79_splice	ENST00000405192	NM_001163147.1	79																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0055456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	91	1020	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0055456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	196	576	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0055456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	20	576	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117870	70117870	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	38	608	0	ENST00000245479.2:c.338T>C	p.Met113Thr	p.M113T	ENST00000245479	NM_000346.3	113	aTg/aCg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0055456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	85	244	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112919929	112919929	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1214510641		P-0055456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	28	283	0	ENST00000351677.2:c.1144G>A	p.Val382Ile	p.V382I	ENST00000351677	NM_002834.3	382	Gtc/Atc																																																																															
RAB35	11021	MSKCC	GRCh37	12	120535147	120535147	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771876856		P-0055456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	70	604	1	ENST00000229340.5:c.508C>T	p.Arg170Ter	p.R170*	ENST00000229340	NM_006861.6	170	Cga/Tga																																																																															
FANCA	2175	MSKCC	GRCh37	16	89846290	89846290	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778754162		P-0055456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	69	777	0	ENST00000389301.3:c.1702G>A	p.Val568Ile	p.V568I	ENST00000389301	NM_000135.2	568	Gtc/Atc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56338949	56338949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	11	24	0	ENST00000348428.3:c.74C>T	p.Pro25Leu	p.P25L	ENST00000348428	NM_006785.3	25	cCg/cTg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146978	38146991	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTGTGCTTTCAA	CTTTGTGCTTTCAA	-			P-0055456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	65	599	0	ENST00000317025.8:c.3151_3164del	p.Leu1051ArgfsTer3	p.L1051Rfs*3	ENST00000317025	NM_023034.1	1051	TTGAAAGCACAAAGa/a																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53224460	53224460	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	252	486	0	ENST00000375401.3:c.3253del	p.Ala1085ProfsTer62	p.A1085Pfs*62	ENST00000375401	NM_004187.3	1085	Gcc/cc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0055530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	82	288	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0055530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	141	219	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120244	70120244	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0055530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	353	597	0	ENST00000245479.2:c.1246C>T	p.Gln416Ter	p.Q416*	ENST00000245479	NM_000346.3	416	Caa/Taa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500661	99500661	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370843278		P-0055530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	108	471	1	ENST00000268035.6:c.4094C>T	p.Ser1365Leu	p.S1365L	ENST00000268035	NM_000875.3	1365	tCg/tTg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748194	41748194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	133	516	0	ENST00000226382.2:c.575C>A	p.Pro192Gln	p.P192Q	ENST00000226382	NM_003924.3	192	cCg/cAg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680043	30680043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	206	622	0	ENST00000376406.3:c.1676C>T	p.Pro559Leu	p.P559L	ENST00000376406	NM_014641.2	559	cCa/cTa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2979544	2979544	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766516628		P-0055530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	110	380	0	ENST00000396946.4:c.703C>T	p.Arg235Trp	p.R235W	ENST00000396946	NM_032415.4	235	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087494	27087494	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	189	680	0	ENST00000324856.7:c.2069del	p.Pro690LeufsTer52	p.P690Lfs*52	ENST00000324856	NM_006015.4	690	Cct/ct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101090	27101090	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0055530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	233	720	1	ENST00000324856.7:c.4372C>T	p.Gln1458Ter	p.Q1458*	ENST00000324856	NM_006015.4	1458	Cag/Tag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46240721	46240722	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0055530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	73	273	0	ENST00000334344.6:c.1580+2dup		p.X527_splice	ENST00000334344	NM_152641.2	527																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5225822	5225822	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202087387		P-0055530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	168	665	1	ENST00000357368.4:c.2410G>A	p.Ala804Thr	p.A804T	ENST00000357368	NM_002850.3	804	Gcg/Acg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251627	212251627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	119	467	1	ENST00000342788.4:c.3432G>T	p.Glu1144Asp	p.E1144D	ENST00000342788	NM_005235.2	1144	gaG/gaT																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637453	176637453	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	278	400	0	ENST00000439151.2:c.2053A>C	p.Lys685Gln	p.K685Q	ENST00000439151	NM_022455.4	685	Aag/Cag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188775	32188775	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	189	736	0	ENST00000375023.3:c.779A>G	p.His260Arg	p.H260R	ENST00000375023	NM_004557.3	260	cAc/cGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0055715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	394	385	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0055715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	486	748	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0055715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	323	326	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
ATR	545	MSKCC	GRCh37	3	142279237	142279237	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1445735789		P-0055715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	332	481	0	ENST00000350721.4:c.1409C>G	p.Ala470Gly	p.A470G	ENST00000350721	NM_001184.3	470	gCt/gGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630764	187630764	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	209	687	0	ENST00000441802.2:c.218A>G	p.Lys73Arg	p.K73R	ENST00000441802	NM_005245.3	73	aAa/aGa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739743	41739743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	176	693	1	ENST00000242208.4:c.230C>T	p.Pro77Leu	p.P77L	ENST00000242208	NM_002192.2	77	cCg/cTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397516896		P-0055813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	54	361	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876658483		P-0055813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	140	777	1	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0055813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	85	312	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0055813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	54	348	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0055813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	53	390	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42870072	42870072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	84	645	0	ENST00000398585.3:c.100G>A	p.Asp34Asn	p.D34N	ENST00000398585	NM_001135099.1	34	Gat/Aat																																																																															
MITF	4286	MSKCC	GRCh37	3	69928439	69928439	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0055813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	124	678	1	ENST00000352241.4:c.259C>T	p.Gln87Ter	p.Q87*	ENST00000352241	NM_198159.2	87	Caa/Taa																																																																															
SMO	6608	MSKCC	GRCh37	7	128851558	128851558	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201898555		P-0055813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	97	777	0	ENST00000249373.3:c.1883G>A	p.Arg628Gln	p.R628Q	ENST00000249373	NM_005631.4	628	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0055880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	181	731	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0055880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	79	387	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
FYN	2534	MSKCC	GRCh37	6	112041026	112041026	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746134687		P-0055880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	59	462	1	ENST00000368678.4:c.229C>T	p.Arg77Cys	p.R77C	ENST00000368678		77	Cgt/Tgt																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281176	49281176	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758137158		P-0055880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1361	92	820	1	ENST00000282018.3:c.223G>A	p.Val75Ile	p.V75I	ENST00000282018	NM_020377.2	75	Gtt/Att																																																																															
MITF	4286	MSKCC	GRCh37	3	70014141	70014141	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	45	607	0	ENST00000352241.4:c.1305C>G	p.Asp435Glu	p.D435E	ENST00000352241	NM_198159.2	435	gaC/gaG																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134898755	134898755	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs546798910		P-0055901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	76	581	0	ENST00000398015.3:c.1813G>A	p.Glu605Lys	p.E605K	ENST00000398015	NM_004441.4	605	Gaa/Aaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427930	49427930	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	38	681	0	ENST00000301067.7:c.10660C>G	p.Arg3554Gly	p.R3554G	ENST00000301067	NM_003482.3	3554	Cgt/Ggt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578205	7578206	+	protein_altering_variant	In_Frame_Ins	INS	-	-	ACACCACAG			P-0055901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	70	735	0	ENST00000269305.4:c.643_644insCTGTGGTGT	p.Ser215delinsThrValValCys	p.S215delinsTVVC	ENST00000269305	NM_001126112.2	215	agt/aCTGTGGTGTgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0055998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	107	397	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0055998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	73	301	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0055998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	109	382	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs879253942		P-0055998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	84	764	0	ENST00000269305.4:c.794T>C	p.Leu265Pro	p.L265P	ENST00000269305	NM_001126112.2	265	cTg/cCg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0055998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	295	487	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55130043	55130043	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774431464		P-0055998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	37	661	0	ENST00000257290.5:c.577G>A	p.Val193Ile	p.V193I	ENST00000257290	NM_006206.4	193	Gtc/Atc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911625	114911625	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	208	569	0	ENST00000543371.1:c.1143C>A	p.Asn381Lys	p.N381K	ENST00000543371	NM_001198531.1	381	aaC/aaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0056001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	183	345	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0056001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	661	877	3	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0056001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	155	342	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0056001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	461	691	15	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0056001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	201	345	2	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248584	212248584	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0056001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	435	532	0	ENST00000342788.4:c.3683C>G	p.Ser1228Ter	p.S1228*	ENST00000342788	NM_005235.2	1228	tCa/tGa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044522	47044522	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	558	400	4	ENST00000329236.7:c.1786del	p.Gln596SerfsTer30	p.Q596Sfs*30	ENST00000329236	NM_001204466.1	595	ttC/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0056008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	165	372	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0056008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	86	309	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174043	112174043	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	91	306	0	ENST00000257430.4:c.2752G>T	p.Glu918Ter	p.E918*	ENST00000257430	NM_000038.5	918	Gag/Tag																																																																															
PAX5	5079	MSKCC	GRCh37	9	37002701	37002701	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	130	617	0	ENST00000358127.4:c.548G>C	p.Gly183Ala	p.G183A	ENST00000358127	NM_001280556.1	183	gGc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0056008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	274	819	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238957	5238957	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760549393		P-0056008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	41	584	0	ENST00000357368.4:c.1822G>A	p.Val608Met	p.V608M	ENST00000357368	NM_002850.3	608	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0056085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	167	737	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0056088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	159	310	0	ENST00000257430.4:c.4037C>G	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577520	7577520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0056088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	384	773	0	ENST00000269305.4:c.761T>A	p.Ile254Asn	p.I254N	ENST00000269305	NM_001126112.2	254	aTc/aAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180055982	180055982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147644625		P-0056088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	74	829	0	ENST00000261937.6:c.1003G>A	p.Val335Ile	p.V335I	ENST00000261937	NM_182925.4	335	Gtc/Atc																																																																															
TET2	54790	MSKCC	GRCh37	4	106190860	106190860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	141	557	0	ENST00000380013.4:c.4138C>A	p.His1380Asn	p.H1380N	ENST00000380013	NM_001127208.2	1380	Cat/Aat																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212587181	212587181	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	102	599	0	ENST00000342788.4:c.820C>A	p.Gln274Lys	p.Q274K	ENST00000342788	NM_005235.2	274	Caa/Aaa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553227	106553227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	297	780	0	ENST00000369096.4:c.1192C>T	p.Leu398Phe	p.L398F	ENST00000369096	NM_001198.3	398	Ctc/Ttc																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	68	145	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710666	114710666	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	211	373	1	ENST00000543371.1:c.151G>T	p.Glu51Ter	p.E51*	ENST00000543371	NM_001198531.1	51	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577572	7577572	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730882004		P-0056211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	282	506	0	ENST00000269305.4:c.709A>G	p.Met237Val	p.M237V	ENST00000269305	NM_001126112.2	237	Atg/Gtg																																																																															
APC	324	MSKCC	GRCh37	5	112175067	112175068	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0056211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	41	173	0	ENST00000257430.4:c.3777dup	p.Gln1260ThrfsTer16	p.Q1260Tfs*16	ENST00000257430	NM_000038.5	1259	ata/atAa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026420	6026420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	125	292	0	ENST00000265849.7:c.1976C>A	p.Ala659Glu	p.A659E	ENST00000265849	NM_000535.5	659	gCa/gAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	95	242	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	137	349	0	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	69	273	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	87	320	1	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	38	173	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	112	377	3	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	145	460	2	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	27	68	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
CASP8	841	MSKCC	GRCh37	2	202149973	202149973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1272714323		P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	265	535	1	ENST00000358485.4:c.1414C>T	p.Arg472Ter	p.R472*	ENST00000358485	NM_001080125.1	472	Cga/Tga																																																																															
ATRX	546	MSKCC	GRCh37	X	76937603	76937603	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	54	274	0	ENST00000373344.5:c.3145del	p.Ile1049Ter	p.I1049*	ENST00000373344	NM_000489.3	1049	Ata/ta																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	145	428	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68981315	68981315	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866864487		P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	48	243	0	ENST00000288368.4:c.1387C>T	p.Arg463Cys	p.R463C	ENST00000288368	NM_024870.2	463	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214398	36214398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs868041281		P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	204	554	2	ENST00000222270.7:c.3057del	p.Gly1020AlafsTer4	p.G1020Afs*4	ENST00000222270	NM_014727.1	1018	Aaa/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101068	27101068	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	187	681	1	ENST00000324856.7:c.4354del	p.Gln1452ArgfsTer29	p.Q1452Rfs*29	ENST00000324856	NM_006015.4	1450	ggC/gg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982123	93982123	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769773179		P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	74	272	0	ENST00000369303.4:c.1342G>A	p.Gly448Arg	p.G448R	ENST00000369303	NM_004440.3	448	Gga/Aga																																																																															
NF1	4763	MSKCC	GRCh37	17	29701087	29701087	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	145	336	3	ENST00000358273.4:c.8434C>T	p.Arg2812Ter	p.R2812*	ENST00000358273	NM_001042492.2	2812	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576486	67576487	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	85	282	0	ENST00000274335.5:c.770dup	p.Asn257LysfsTer10	p.N257Kfs*10	ENST00000274335		255	-/A																																																																															
MGA	23269	MSKCC	GRCh37	15	42042041	42042041	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	139	409	0	ENST00000219905.7:c.6240del	p.Val2081TrpfsTer21	p.V2081Wfs*21	ENST00000219905	NM_001164273.1	2079	gAa/ga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255118	16255118	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	124	300	0	ENST00000375759.3:c.2383C>T	p.Arg795Ter	p.R795*	ENST00000375759	NM_015001.2	795	Cga/Tga																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026132	71026132	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751543308		P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	127	316	0	ENST00000318789.4:c.1490G>A	p.Arg497Gln	p.R497Q	ENST00000318789	NM_032682.5	497	cGa/cAa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524540	176524540	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148143006		P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	251	861	0	ENST00000292408.4:c.2272C>T	p.Arg758Cys	p.R758C	ENST00000292408	NM_213647.1	758	Cgc/Tgc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680406	30680406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764942978		P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	55	516	0	ENST00000376406.3:c.1313G>A	p.Arg438His	p.R438H	ENST00000376406	NM_014641.2	438	cGt/cAt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324094	31324094	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs151341247		P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	80	253	1	ENST00000412585.2:c.469T>C	p.Trp157Arg	p.W157R	ENST00000412585	NM_005514.6	157	Tgg/Cgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153259007	153259007	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	48	196	0	ENST00000281708.4:c.808C>T	p.Gln270Ter	p.Q270*	ENST00000281708	NM_033632.3	270	Caa/Taa																																																																															
RET	5979	MSKCC	GRCh37	10	43615014	43615014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	149	709	0	ENST00000355710.3:c.2428G>T	p.Gly810Cys	p.G810C	ENST00000355710	NM_020975.4	810	Ggc/Tgc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740131	162740131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	107	340	0	ENST00000367921.3:c.1333C>A	p.Leu445Ile	p.L445I	ENST00000367921	NM_006182.2	445	Ctt/Att																																																																															
RARA	5914	MSKCC	GRCh37	17	38511631	38511631	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	131	583	0	ENST00000254066.5:c.1129A>G	p.Met377Val	p.M377V	ENST00000254066	NM_000964.3	377	Atg/Gtg																																																																															
VHL	7428	MSKCC	GRCh37	3	10183857	10183857	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	168	594	0	ENST00000256474.2:c.326T>C	p.Ile109Thr	p.I109T	ENST00000256474	NM_000551.3	109	aTc/aCc																																																																															
TET2	54790	MSKCC	GRCh37	4	106156696	106156696	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	97	313	0	ENST00000380013.4:c.1597A>T	p.Met533Leu	p.M533L	ENST00000380013	NM_001127208.2	533	Atg/Ttg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86659279	86659279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	51	182	0	ENST00000274376.6:c.1568G>A	p.Ser523Asn	p.S523N	ENST00000274376	NM_002890.2	523	aGt/aAt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030347	180030347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	237	790	0	ENST00000261937.6:c.3937C>T	p.Pro1313Ser	p.P1313S	ENST00000261937	NM_182925.4	1313	Cct/Tct																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225453	26225454	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	165	342	0	ENST00000360408.1:c.71_72del	p.Lys24SerfsTer99	p.K24Sfs*99	ENST00000360408	NM_003532.2	24	aAG/a																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793865	89793866	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	104	309	0	ENST00000336032.3:c.934_935del	p.Arg312GlyfsTer27	p.R312Gfs*27	ENST00000336032	NM_006813.2	312	AGg/g																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137525606	137525606	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	21	378	0	ENST00000367739.4:c.409del	p.Glu137ArgfsTer6	p.E137Rfs*6	ENST00000367739	NM_000416.2	137	Gag/ag																																																																															
MET	4233	MSKCC	GRCh37	7	116339149	116339150	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	49	210	0	ENST00000397752.3:c.11_12insA	p.Ala5ArgfsTer23	p.A5Rfs*23	ENST00000397752	NM_000245.2	4	ccc/ccAc																																																																															
MET	4233	MSKCC	GRCh37	7	116403178	116403178	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	138	424	0	ENST00000397752.3:c.2443del	p.Leu815Ter	p.L815*	ENST00000397752	NM_000245.2	813	ctC/ct																																																																															
MTOR	2475	MSKCC	GRCh37	1	11319406	11319406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149221273		P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			422	83	679	0	ENST00000361445.4:c.61G>A	p.Val21Ile	p.V21I	ENST00000361445	NM_004958.3	21	Gtc/Atc																																																																															
SDHB	6390	MSKCC	GRCh37	1	17350532	17350532	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	61	535	0	ENST00000375499.3:c.578G>T	p.Ser193Ile	p.S193I	ENST00000375499	NM_003000.2	193	aGc/aTc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	117	609	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123258114	123258114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	39	329	0	ENST00000358487.5:c.1567G>A	p.Ala523Thr	p.A523T	ENST00000358487	NM_000141.4	523	Gcc/Acc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118362639	118362639	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782779521		P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	48	468	0	ENST00000534358.1:c.5000G>A	p.Arg1667Gln	p.R1667Q	ENST00000534358	NM_005933.3	1667	cGg/cAg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871798	12871799	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	75	543	0	ENST00000228872.4:c.517_518del	p.Asn173CysfsTer31	p.N173Cfs*31	ENST00000228872	NM_004064.3	172	gAA/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs770248150		P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	51	394	0	ENST00000256078.4:c.351A>C	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425562	49425562	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	74	790	1	ENST00000301067.7:c.12926C>A	p.Pro4309His	p.P4309H	ENST00000301067	NM_003482.3	4309	cCt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434004	49434005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs750341925		P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	63	767	2	ENST00000301067.7:c.7548dup	p.Asn2517GlnfsTer138	p.N2517Qfs*138	ENST00000301067	NM_003482.3	2516	-/C																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446993	49446993	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	71	592	0	ENST00000301067.7:c.951C>A	p.Cys317Ter	p.C317*	ENST00000301067	NM_003482.3	317	tgC/tgA																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914340	32914343	+	frameshift_variant	Frame_Shift_Del	DEL	GTTA	GTTA	-	rs80359543		P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			278	46	438	0	ENST00000380152.3:c.5851_5854del	p.Ser1951TrpfsTer11	p.S1951Wfs*11	ENST00000380152		1950	GTTAgt/gt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43730536	43730536	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			365	64	490	0	ENST00000382044.4:c.3177del	p.Thr1060ProfsTer36	p.T1060Pfs*36	ENST00000382044	NM_001141980.1	1059	ccC/cc																																																																															
USP8	9101	MSKCC	GRCh37	15	50763861	50763861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			286	55	463	0	ENST00000433963.1:c.718C>T	p.Pro240Ser	p.P240S	ENST00000433963	NM_001128611.1	240	Cca/Tca																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			396	137	660	8	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117594	70117594	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	69	773	4	ENST00000245479.2:c.66del	p.Ser23AlafsTer38	p.S23Afs*38	ENST00000245479	NM_000346.3	21	gCc/gc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290919	15290919	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	61	709	1	ENST00000263388.2:c.3291del	p.Thr1098ProfsTer174	p.T1098Pfs*174	ENST00000263388	NM_000435.2	1097	ggG/gg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296358	15296358	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	68	806	0	ENST00000263388.2:c.2084del	p.Pro695ArgfsTer165	p.P695Rfs*165	ENST00000263388	NM_000435.2	695	cCg/cg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955111	17955112	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755706305		P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	40	629	1	ENST00000458235.1:c.115dup	p.Gln39ProfsTer13	p.Q39Pfs*13	ENST00000458235	NM_000215.3	39	cag/cCag																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955130	17955130	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs565783591		P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	73	604	0	ENST00000458235.1:c.97C>T	p.Arg33Trp	p.R33W	ENST00000458235	NM_000215.3	33	Cgg/Tgg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587776934		P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			431	49	688	0	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18963076	18963076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	64	559	0	ENST00000262803.5:c.943G>A	p.Asp315Asn	p.D315N	ENST00000262803	NM_002911.3	315	Gac/Aac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211057	36211057	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			412	74	720	0	ENST00000222270.7:c.808G>T	p.Glu270Ter	p.E270*	ENST00000222270	NM_014727.1	270	Gag/Tag																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231773	36231773	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	79	734	0	ENST00000300305.3:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000300305		204	cGa/cAa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37056036	37056036	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs267607789		P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	102	331	0	ENST00000231790.2:c.790+1G>A		p.X264_splice	ENST00000231790	NM_000249.3	264																																																																																
MLH1	4292	MSKCC	GRCh37	3	37070348	37070349	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	65	547	1	ENST00000231790.2:c.1489dup	p.Arg497ProfsTer6	p.R497Pfs*6	ENST00000231790	NM_000249.3	495	acc/aCcc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49929190	49929190	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs55856544		P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	157	628	0	ENST00000296474.3:c.3352+1G>A		p.X1118_splice	ENST00000296474	NM_002447.2	1118																																																																																
ATXN7	6314	MSKCC	GRCh37	3	63938072	63938072	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	46	426	0	ENST00000398590.3:c.412T>C	p.Phe138Leu	p.F138L	ENST00000398590	NM_001177387.1	138	Ttc/Ctc																																																																															
TERT	7015	MSKCC	GRCh37	5	1253886	1253886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			329	46	642	0	ENST00000310581.5:c.3356C>T	p.Ala1119Val	p.A1119V	ENST00000310581	NM_198253.2	1119	gCc/gTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295098	1295098	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1166646936		P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	52	784	0	ENST00000310581.5:c.7C>T	p.Arg3Cys	p.R3C	ENST00000310581	NM_198253.2	3	Cgc/Tgc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	49	582	2	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			291	66	506	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112176026	112176038	+	frameshift_variant	Frame_Shift_Del	DEL	ATTATTTCTGCCA	ATTATTTCTGCCA	-			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			457	60	579	0	ENST00000257430.4:c.4735_4747del	p.Ile1579CysfsTer67	p.I1579Cfs*67	ENST00000257430	NM_000038.5	1579	ATTATTTCTGCCAtg/tg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048787	180048787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	73	715	1	ENST00000261937.6:c.1775G>A	p.Arg592His	p.R592H	ENST00000261937	NM_182925.4	592	cGc/cAc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911249	29911249	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			207	28	345	0	ENST00000376809.5:c.548A>G	p.Tyr183Cys	p.Y183C	ENST00000376809	NM_002116.7	183	tAc/tGc																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64290026	64290026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	52	478	0	ENST00000370651.3:c.469C>T	p.Arg157Trp	p.R157W	ENST00000370651	NM_003463.4	157	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273044	55273044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	66	685	0	ENST00000275493.2:c.3367C>A	p.Pro1123Thr	p.P1123T	ENST00000275493	NM_005228.3	1123	Cca/Aca																																																																															
EZH2	2146	MSKCC	GRCh37	7	148511221	148511221	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1268069858		P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	57	430	0	ENST00000320356.2:c.1681C>T	p.Arg561Cys	p.R561C	ENST00000320356	NM_004456.4	561	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874418	151874419	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			430	42	601	0	ENST00000262189.6:c.8119dup	p.Val2707GlyfsTer2	p.V2707Gfs*2	ENST00000262189	NM_170606.2	2707	gtt/gGtt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879231	151879231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	77	651	0	ENST00000262189.6:c.5714C>A	p.Pro1905His	p.P1905H	ENST00000262189	NM_170606.2	1905	cCt/cAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132814	152132815	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			279	35	506	0	ENST00000262189.6:c.57dup	p.Glu20ArgfsTer39	p.E20Rfs*39	ENST00000262189	NM_170606.2	19	-/C																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971132	21971132	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774633329		P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	88	782	0	ENST00000304494.5:c.226G>A	p.Ala76Thr	p.A76T	ENST00000304494	NM_000077.4	76	Gcc/Acc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570334	87570334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	82	713	0	ENST00000277120.3:c.2074G>A	p.Asp692Asn	p.D692N	ENST00000277120		692	Gat/Aat																																																																															
ARAF	369	MSKCC	GRCh37	X	47426304	47426304	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	86	847	0	ENST00000377045.4:c.721A>G	p.Thr241Ala	p.T241A	ENST00000377045	NM_001654.4	241	Act/Gct																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	51	620	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
MED12	9968	MSKCC	GRCh37	X	70354209	70354209	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0056681-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	42	432	1	ENST00000374080.3:c.4625del	p.Gly1542AlafsTer45	p.G1542Afs*45	ENST00000374080		1540	gtG/gt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0056962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	101	383	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0056962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	216	827	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0056962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	169	891	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112163698	112163698	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854572		P-0056962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	14	265	0	ENST00000257430.4:c.1621C>T	p.Gln541Ter	p.Q541*	ENST00000257430	NM_000038.5	541	Cag/Tag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68981315	68981315	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866864487		P-0056962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	44	331	0	ENST00000288368.4:c.1387C>T	p.Arg463Cys	p.R463C	ENST00000288368	NM_024870.2	463	Cgc/Tgc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274928	41274928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	95	431	2	ENST00000349496.5:c.1178C>A	p.Thr393Asn	p.T393N	ENST00000349496	NM_001904.3	393	aCt/aAt																																																																															
APC	324	MSKCC	GRCh37	5	112175582	112175583	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0056962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	161	431	0	ENST00000257430.4:c.4292dup	p.Met1431IlefsTer7	p.M1431Ifs*7	ENST00000257430	NM_000038.5	1431	atg/aTtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0058013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	85	375	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468436	89468436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	21	267	0	ENST00000336596.2:c.1970T>C	p.Val657Ala	p.V657A	ENST00000336596	NM_005233.5	657	gTt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0058013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	39	319	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198285796	198285796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	49	407	0	ENST00000335508.6:c.257C>T	p.Ala86Val	p.A86V	ENST00000335508	NM_012433.2	86	gCc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112175582	112175583	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0058013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	48	368	0	ENST00000257430.4:c.4292_4293dup	p.Pro1432CysfsTer42	p.P1432Cfs*42	ENST00000257430	NM_000038.5	1431	atg/aTGtg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0058026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	64	272	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0058026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	156	460	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
APC	324	MSKCC	GRCh37	5	112137082	112137082	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0058026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	38	189	0	ENST00000257430.4:c.834+2T>G		p.X278_splice	ENST00000257430	NM_000038.5	278																																																																																
FANCC	2176	MSKCC	GRCh37	9	97873865	97873865	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	292	650	0	ENST00000289081.3:c.1209G>A	p.Trp403Ter	p.W403*	ENST00000289081	NM_000136.2	403	tgG/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0058030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	102	224	1	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs772821016		P-0058030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	69	378	0	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																																																															
ATRX	546	MSKCC	GRCh37	X	76907719	76907719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	101	476	2	ENST00000373344.5:c.4442G>A	p.Arg1481Gln	p.R1481Q	ENST00000373344	NM_000489.3	1481	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0058030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	372	820	0	ENST00000269305.4:c.376-1G>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0058107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	470	530	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519841		P-0058107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	171	262	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32185796	32185796	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs8192591		P-0058107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	508	703	0	ENST00000375023.3:c.1600G>A	p.Gly534Ser	p.G534S	ENST00000375023	NM_004557.3	534	Ggc/Agc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245521	153245521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	382	352	0	ENST00000281708.4:c.1670G>T	p.Gly557Val	p.G557V	ENST00000281708	NM_033632.3	557	gGa/gTa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118886	70118889	+	frameshift_variant	Frame_Shift_Del	DEL	CCTT	CCTT	-			P-0058107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	527	736	1	ENST00000245479.2:c.459_462del	p.Phe154TrpfsTer28	p.F154Wfs*28	ENST00000245479	NM_000346.3	153	cCCTTc/cc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280815	41280815	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	274	390	0	ENST00000349496.5:c.2328G>A	p.Trp776Ter	p.W776*	ENST00000349496	NM_001904.3	776	tgG/tgA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412386	63412387	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0058107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	868	431	0	ENST00000330258.3:c.780dup	p.Pro261ThrfsTer17	p.P261Tfs*17	ENST00000330258	NM_152424.3	260	-/A																																																																															
APC	324	MSKCC	GRCh37	5	112173583	112173594	+	frameshift_variant	Frame_Shift_Del	DEL	AGATGCTCAGCA	AGATGCTCAGCA	C			P-0058107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	159	283	0	ENST00000257430.4:c.2292_2303delinsC	p.Leu764PhefsTer7	p.L764Ffs*7	ENST00000257430	NM_000038.5	764	ttAGATGCTCAGCAc/ttCc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735470	40735470	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761910971		P-0058509-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			774	359	773	0	ENST00000373198.4:c.3403G>A	p.Val1135Met	p.V1135M	ENST00000373198	NM_133170.3	1135	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0058509-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			471	154	644	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579344	7579345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0058509-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			413	269	810	0	ENST00000269305.4:c.342dup	p.His115AlafsTer34	p.H115Afs*34	ENST00000269305	NM_001126112.2	114	-/G																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0058509-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	114	359	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FH	2271	MSKCC	GRCh37	1	241665870	241665870	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0058509-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	84	497	0	ENST00000366560.3:c.1109G>A	p.Gly370Asp	p.G370D	ENST00000366560	NM_000143.3	370	gGc/gAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114917746	114917778	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	GCAGTAATTCCCTGTGTTTCATCTCTTCATCTA	GCAGTAATTCCCTGTGTTTCATCTCTTCATCTA	-			P-0058509-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	143	380	0	ENST00000543371.1:c.1270-33_1270-1del		p.X424_splice	ENST00000543371	NM_001198531.1	424																																																																																
EED	8726	MSKCC	GRCh37	11	85988135	85988135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058509-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	87	480	0	ENST00000263360.6:c.1080G>T	p.Gln360His	p.Q360H	ENST00000263360	NM_003797.3	360	caG/caT																																																																															
DICER1	23405	MSKCC	GRCh37	14	95557561	95557562	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATA			P-0058509-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	91	726	0	ENST00000343455.3:c.5503_5505dup	p.Tyr1835dup	p.Y1835dup	ENST00000343455	NM_177438.2	1835	-/TAT																																																																															
APC	324	MSKCC	GRCh37	5	112137001	112137001	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058509-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	49	486	0	ENST00000257430.4:c.756del	p.Gly253AlafsTer40	p.G253Afs*40	ENST00000257430	NM_000038.5	252	aCc/ac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0058606-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	109	461	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0058606-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			125	68	402	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			314	137	446	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522551	176522551	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			630	188	712	0	ENST00000292408.4:c.1648G>C	p.Val550Leu	p.V550L	ENST00000292408	NM_213647.1	550	Gtg/Ctg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41408885	41408885	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868295248		P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			467	121	435	0	ENST00000373198.4:c.541G>A	p.Glu181Lys	p.E181K	ENST00000373198	NM_133170.3	181	Gag/Aag																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374915	149374915	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772542532		P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			534	165	568	0	ENST00000360632.3:c.179C>T	p.Ser60Leu	p.S60L	ENST00000360632	NM_015472.4	60	tCg/tTg																																																																															
WT1	7490	MSKCC	GRCh37	11	32456648	32456648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			350	121	489	1	ENST00000332351.3:c.244G>A	p.Ala82Thr	p.A82T	ENST00000332351	NM_024426.4	82	Gcc/Acc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38960627	38960627	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376491170		P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			465	108	342	0	ENST00000357387.3:c.1724G>A	p.Arg575Gln	p.R575Q	ENST00000357387	NM_152756.3	575	cGa/cAa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155416	185155416	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			398	120	418	0	ENST00000265026.3:c.657C>G	p.Phe219Leu	p.F219L	ENST00000265026	NM_004721.4	219	ttC/ttG																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214068	36214068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			588	167	608	0	ENST00000222270.7:c.2894G>A	p.Arg965Gln	p.R965Q	ENST00000222270	NM_014727.1	965	cGa/cAa																																																																															
CDH1	999	MSKCC	GRCh37	16	68845616	68845616	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			372	161	426	0	ENST00000261769.5:c.862G>C	p.Asp288His	p.D288H	ENST00000261769	NM_004360.3	288	Gac/Cac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023214	27023214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	120	500	0	ENST00000324856.7:c.320C>T	p.Ala107Val	p.A107V	ENST00000324856	NM_006015.4	107	gCg/gTg																																																																															
STK40	83931	MSKCC	GRCh37	1	36824405	36824405	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			382	120	455	0	ENST00000373129.3:c.131C>A	p.Ser44Ter	p.S44*	ENST00000373129	NM_032017.1	44	tCa/tAa																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150917513	150917513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			609	166	561	0	ENST00000271640.5:c.1069G>T	p.Glu357Ter	p.E357*	ENST00000271640	NM_001145415.1	357	Gag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111433	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			489	153	505	0	ENST00000346208.3:c.922-3C>G		p.X308_splice	ENST00000346208		308																																																																																
KDM5A	5927	MSKCC	GRCh37	12	430265	430265	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			417	119	426	0	ENST00000399788.2:c.2437G>C	p.Asp813His	p.D813H	ENST00000399788	NM_001042603.1	813	Gat/Cat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445091	49445091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			618	180	650	0	ENST00000301067.7:c.2375C>G	p.Ala792Gly	p.A792G	ENST00000301067	NM_003482.3	792	gCt/gGt																																																																															
EZH1	2145	MSKCC	GRCh37	17	40865229	40865229	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			317	130	380	0	ENST00000428826.2:c.1202C>T	p.Ser401Leu	p.S401L	ENST00000428826		401	tCa/tTa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760886	59760886	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			536	89	390	0	ENST00000259008.2:c.3521G>C	p.Arg1174Thr	p.R1174T	ENST00000259008	NM_032043.2	1174	aGa/aCa																																																																															
INSR	3643	MSKCC	GRCh37	19	7128953	7128953	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			393	81	416	0	ENST00000302850.5:c.2855C>G	p.Ser952Ter	p.S952*	ENST00000302850	NM_000208.2	952	tCa/tGa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291044	15291044	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			559	162	630	0	ENST00000263388.2:c.3166C>T	p.Gln1056Ter	p.Q1056*	ENST00000263388	NM_000435.2	1056	Cag/Tag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023297	31023297	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			478	157	504	0	ENST00000375687.4:c.2782G>C	p.Glu928Gln	p.E928Q	ENST00000375687	NM_015338.5	928	Gag/Cag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024034	31024034	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			615	150	596	0	ENST00000375687.4:c.3519G>C	p.Leu1173Phe	p.L1173F	ENST00000375687	NM_015338.5	1173	ttG/ttC																																																																															
REST	5978	MSKCC	GRCh37	4	57796797	57796815	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCAGTAAGCCTCCTCAG	AAGCAGTAAGCCTCCTCAG	-			P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			329	102	586	0	ENST00000309042.7:c.1776_1794del	p.Ser592ArgfsTer119	p.S592Rfs*119	ENST00000309042	NM_005612.4	591	aaAAGCAGTAAGCCTCCTCAG/aa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332681	153332681	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			580	163	546	0	ENST00000281708.4:c.275C>G	p.Ser92Ter	p.S92*	ENST00000281708	NM_033632.3	92	tCa/tGa																																																																															
APC	324	MSKCC	GRCh37	5	112173313	112173313	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			364	88	427	0	ENST00000257430.4:c.2022G>C	p.Leu674Phe	p.L674F	ENST00000257430	NM_000038.5	674	ttG/ttC																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459791	149459791	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs569441099		P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			568	158	618	0	ENST00000286301.3:c.416C>T	p.Ser139Leu	p.S139L	ENST00000286301	NM_005211.3	139	tCg/tTg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288703	33288703	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058615-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			581	167	544	0	ENST00000374542.5:c.849C>A	p.Phe283Leu	p.F283L	ENST00000374542	NM_001141970.1	283	ttC/ttA																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970916	21970916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3731249		P-0058633-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	78	475	0	ENST00000304494.5:c.442G>A	p.Ala148Thr	p.A148T	ENST00000304494	NM_000077.4	148	Gcg/Acg																																																																															
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0058633-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			147	115	273	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467922	50467922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058633-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	83	437	0	ENST00000331340.3:c.1157G>A	p.Arg386His	p.R386H	ENST00000331340	NM_006060.4	386	cGc/cAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920424	114920425	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0058633-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	194	362	0	ENST00000543371.1:c.1366_1367del	p.Gln456AspfsTer20	p.Q456Dfs*20	ENST00000543371	NM_001198531.1	455	cgACag/cgag																																																																															
TP53	7157	MSKCC	GRCh37	17	7576893	7576894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTGGGGA			P-0058633-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	258	485	0	ENST00000269305.4:c.945_952dup	p.Pro318LeufsTer30	p.P318Lfs*30	ENST00000269305	NM_001126112.2	318	cca/cTCCCCAGCca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231617	5231617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058633-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			129	68	126	0	ENST00000357368.4:c.1859C>T	p.Ala620Val	p.A620V	ENST00000357368	NM_002850.3	620	gCc/gTc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056655	26056655	+	start_lost	Translation_Start_Site	SNP	A	A	T			P-0058633-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	72	359	0	ENST00000343677.2:c.2T>A	p.Met1?	p.M1?	ENST00000343677	NM_005319.3	1	aTg/aAg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339062	65339070	+	inframe_deletion	In_Frame_Del	DEL	CAGATACTC	CAGATACTC	-			P-0058643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			506	63	321	0	ENST00000342505.4:c.466_474del	p.Glu156_Leu158del	p.E156_L158del	ENST00000342505	NM_002227.2	156	GAGTATCTG/-																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112764367	112764367	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			221	21	129	0	ENST00000369452.4:c.976C>G	p.Leu326Val	p.L326V	ENST00000369452	NM_007373.3	326	Ctt/Gtt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28908221	28908221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	34	186	0	ENST00000282397.4:c.2534C>T	p.Ser845Leu	p.S845L	ENST00000282397	NM_002019.4	845	tCa/tTa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32890645	32890645	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	32	171	0	ENST00000380152.3:c.48G>C	p.Lys16Asn	p.K16N	ENST00000380152		16	aaG/aaC																																																																															
MGA	23269	MSKCC	GRCh37	15	42034382	42034963	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCAAGACCAGCCTGACCAACATGGAGAAACCTTGTCTCTACTAAAAATACAAAAATTAGCTGGGTTTGGTGGTATGTGCCTGTAATCCCAGCTACTCGGGAAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGACAGAGGTTGCAGTGAGCCGAGATCGCGCCATTGCACTCTAGCCTGGGCAACAAGAAAGAAACTCCATCTTAAAAAAGAAAAAAAAGAAATTGGCACAAATAATACAGGTAGGTAGTACCTGTAAGAAATTGACCCAGTAGTGCACAGTAAATGTCGGTAAGCACAGTCACTAAGAGGATAAAATATGAGAACTGAAGATTTTTGACCTGCAAATTTCTGTTTGCAGCGGCTCGACCCTCTCCTGGTGGTGTGTTCACACAGTTTGTGATGAGTAAAGTTGGAGCCTTGCAGCAGAAGATACCTGGAGTTAGCACACCCCAAACCCTGGCAGGGACACAGAAGTTCAGTATCAGACCTTCTCCAGTAATGGTCGTCACACCTGTGGTTTCTTCTGAGCCAGTTCAGGTGTGCAGCCCTGTGACTGCTGCTGTCACTACTACCACCCC	TCAAGACCAGCCTGACCAACATGGAGAAACCTTGTCTCTACTAAAAATACAAAAATTAGCTGGGTTTGGTGGTATGTGCCTGTAATCCCAGCTACTCGGGAAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGACAGAGGTTGCAGTGAGCCGAGATCGCGCCATTGCACTCTAGCCTGGGCAACAAGAAAGAAACTCCATCTTAAAAAAGAAAAAAAAGAAATTGGCACAAATAATACAGGTAGGTAGTACCTGTAAGAAATTGACCCAGTAGTGCACAGTAAATGTCGGTAAGCACAGTCACTAAGAGGATAAAATATGAGAACTGAAGATTTTTGACCTGCAAATTTCTGTTTGCAGCGGCTCGACCCTCTCCTGGTGGTGTGTTCACACAGTTTGTGATGAGTAAAGTTGGAGCCTTGCAGCAGAAGATACCTGGAGTTAGCACACCCCAAACCCTGGCAGGGACACAGAAGTTCAGTATCAGACCTTCTCCAGTAATGGTCGTCACACCTGTGGTTTCTTCTGAGCCAGTTCAGGTGTGCAGCCCTGTGACTGCTGCTGTCACTACTACCACCCC	-			P-0058643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			7	26	2	0	ENST00000219905.7:c.4586-357_4810del		p.X1529_splice	ENST00000219905	NM_001164273.1	1529																																																																																
SMAD3	4088	MSKCC	GRCh37	15	67473627	67473627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			645	58	419	0	ENST00000327367.4:c.707C>T	p.Ser236Phe	p.S236F	ENST00000327367	NM_005902.3	236	tCc/tTc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90645594	90645594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1234438811		P-0058643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	42	379	0	ENST00000330062.3:c.29C>T	p.Ser10Leu	p.S10L	ENST00000330062	NM_002168.2	10	tCg/tTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866444	37866444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	72	535	0	ENST00000269571.5:c.749C>T	p.Ser250Phe	p.S250F	ENST00000269571		250	tCt/tTt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119974	70120026	+	frameshift_variant	Frame_Shift_Del	DEL	GCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAGGCGCCGCC	GCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAGGCGCCGCC	-			P-0058643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	50	606	0	ENST00000245479.2:c.984_1036del	p.Ser330AlafsTer230	p.S330Afs*230	ENST00000245479	NM_000346.3	326	GCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAGGCGCCGCCg/g																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52693425	52693425	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0058643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	81	629	0	ENST00000322088.6:c.76C>G	p.Gln26Glu	p.Q26E	ENST00000322088	NM_014225.5	26	Cag/Gag																																																																															
TOP1	7150	MSKCC	GRCh37	20	39741498	39741498	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			550	36	273	0	ENST00000361337.2:c.1385G>T	p.Arg462Leu	p.R462L	ENST00000361337	NM_003286.2	462	cGa/cTa																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204917	128204917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	91	533	1	ENST00000341105.2:c.524C>T	p.Pro175Leu	p.P175L	ENST00000341105	NM_032638.4	175	cCc/cTc																																																																															
ATR	545	MSKCC	GRCh37	3	142259759	142259759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			357	27	156	0	ENST00000350721.4:c.3568G>A	p.Glu1190Lys	p.E1190K	ENST00000350721	NM_001184.3	1190	Gaa/Aaa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55151602	55151602	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	22	154	0	ENST00000257290.5:c.2388G>C	p.Leu796Phe	p.L796F	ENST00000257290	NM_006206.4	796	ttG/ttC																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592045	67592045	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	62	247	0	ENST00000274335.5:c.1861G>T	p.Glu621Ter	p.E621*	ENST00000274335		621	Gag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860435	151860435	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058643-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	110	311	0	ENST00000262189.6:c.10227G>C	p.Glu3409Asp	p.E3409D	ENST00000262189	NM_170606.2	3409	gaG/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0058800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	203	306	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175951	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	164	289	0	ENST00000257430.4:c.4660G>T	p.Glu1554Ter	p.E1554*	ENST00000257430	NM_000038.5	1554	Gaa/Taa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274899	41274899	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	92	235	0	ENST00000349496.5:c.1149G>T	p.Trp383Cys	p.W383C	ENST00000349496	NM_001904.3	383	tgG/tgT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0058800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	294	224	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
APC	324	MSKCC	GRCh37	5	112174425	112174426	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAAT			P-0058800-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	57	256	0	ENST00000257430.4:c.3138_3141dup	p.Arg1048Ter	p.R1048*	ENST00000257430	NM_000038.5	1045	cag/caGAATg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0058989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	61	697	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974678	21974678	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs587778189		P-0058989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	72	761	0	ENST00000304494.5:c.149A>G	p.Gln50Arg	p.Q50R	ENST00000304494	NM_000077.4	50	cAg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0058989-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	20	404	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0058996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	186	732	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0058996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	90	891	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0058996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	156	519	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112174086	112174086	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs878853432		P-0058996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	162	633	0	ENST00000257430.4:c.2795C>A	p.Ser932Ter	p.S932*	ENST00000257430	NM_000038.5	932	tCa/tAa																																																																															
SDHA	6389	MSKCC	GRCh37	5	235336	235336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058996-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	25	730	0	ENST00000264932.6:c.1142C>T	p.Pro381Leu	p.P381L	ENST00000264932	NM_004168.2	381	cCt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0058999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	101	667	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188078	11188078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	162	752	1	ENST00000361445.4:c.6016G>T	p.Val2006Phe	p.V2006F	ENST00000361445	NM_004958.3	2006	Gtc/Ttc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858201	9858201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	98	783	0	ENST00000330684.3:c.3200G>A	p.Arg1067Gln	p.R1067Q	ENST00000330684	NM_001134407.1	1067	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0058999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	118	421	2	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100309	27100309	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			409	206	808	3	ENST00000324856.7:c.4022del	p.Asn1341IlefsTer140	p.N1341Ifs*140	ENST00000324856	NM_006015.4	1341	Aat/at																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67593274	67593274	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0058999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	152	607	6	ENST00000274335.5:c.2020A>T	p.Lys674Ter	p.K674*	ENST00000274335		674	Aaa/Taa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129256	152129256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	140	773	4	ENST00000206249.3:c.209C>T	p.Ala70Val	p.A70V	ENST00000206249	NM_000125.3	70	gCg/gTg																																																																															
PARK2	5071	MSKCC	GRCh37	6	161771163	161771163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755627153		P-0058999-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	116	562	6	ENST00000366898.1:c.1366G>A	p.Val456Ile	p.V456I	ENST00000366898	NM_004562.2	456	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747342068		P-0059002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			55	218	789	0	ENST00000269305.4:c.394A>G	p.Lys132Glu	p.K132E	ENST00000269305	NM_001126112.2	132	Aag/Gag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874706	151874706	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0059002-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			89	382	860	0	ENST00000262189.6:c.7832del	p.Pro2611LeufsTer36	p.P2611Lfs*36	ENST00000262189	NM_170606.2	2611	cCt/ct																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016603	12016603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	125	471	0	ENST00000353533.5:c.739G>T	p.Asp247Tyr	p.D247Y	ENST00000353533	NM_003010.3	247	Gac/Tac																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797944	45797944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			836	51	724	0	ENST00000372115.3:c.785G>A	p.Gly262Glu	p.G262E	ENST00000372115	NM_001048171.1	262	gGa/gAa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156837979	156837979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			703	145	697	1	ENST00000524377.1:c.512C>A	p.Pro171His	p.P171H	ENST00000524377	NM_002529.3	171	cCt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578221	7578225	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTG	TTCTG	-			P-0059032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			598	53	631	0	ENST00000269305.4:c.624_628del	p.Asp208GlufsTer6	p.D208Efs*6	ENST00000269305	NM_001126112.2	208	gaCAGAAac/gaac																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374983	45374983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			415	109	538	0	ENST00000262160.6:c.860G>T	p.Gly287Val	p.G287V	ENST00000262160	NM_005901.5	287	gGa/gTa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271862	15271862	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			861	93	791	0	ENST00000263388.2:c.6577C>A	p.Pro2193Thr	p.P2193T	ENST00000263388	NM_000435.2	2193	Ccc/Acc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18968241	18968241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	113	500	0	ENST00000262803.5:c.2081G>A	p.Arg694Gln	p.R694Q	ENST00000262803	NM_002911.3	694	cGg/cAg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47492905	47492905	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0059032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	129	529	0	ENST00000404338.3:c.4009A>C	p.Met1337Leu	p.M1337L	ENST00000404338	NM_004491.4	1337	Atg/Ctg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162394390	162394390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0059032-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			526	105	494	0	ENST00000366898.1:c.678G>T	p.Leu226Phe	p.L226F	ENST00000366898	NM_004562.2	226	ttG/ttT																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061220	38061225	+	inframe_deletion	In_Frame_Del	DEL	CGTTCT	CGTTCT	-			P-0059036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			190	106	356	0	ENST00000250448.2:c.764_769del	p.Glu255_Asn256del	p.E255_N256del	ENST00000250448	NM_004496.3	255	gAGAACGgc/ggc																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47425584	47425584	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0059036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	20	243	0	ENST00000404338.3:c.3652A>G	p.Ile1218Val	p.I1218V	ENST00000404338	NM_004491.4	1218	Att/Gtt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426120	49426120	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	G	G	TT			P-0059036-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	23	413	0	ENST00000301067.7:c.12368delinsAA	p.Ser4123Ter	p.S4123*	ENST00000301067	NM_003482.3	4123	tCa/tAAa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870815	12870833	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGATGGACGCCAGGCAG	GCGGATGGACGCCAGGCAG	-			P-0059037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			568	108	579	0	ENST00000228872.4:c.47_65del	p.Met16SerfsTer20	p.M16Sfs*20	ENST00000228872	NM_004064.3	14	gaGCGGATGGACGCCAGGCAG/ga																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205592	38205592	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0059037-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	31	505	0	ENST00000317025.8:c.98C>A	p.Ala33Asp	p.A33D	ENST00000317025	NM_023034.1	33	gCc/gAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0059047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	120	380	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0059047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			337	129	437	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0059047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	155	593	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201746	66201746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0059047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			421	58	454	1	ENST00000273854.3:c.2756G>A	p.Arg919Gln	p.R919Q	ENST00000273854	NM_004439.5	919	cGa/cAa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152420001	152420001	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763337967		P-0059047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	137	592	0	ENST00000206249.3:c.1688C>T	p.Thr563Met	p.T563M	ENST00000206249	NM_000125.3	563	aCg/aTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295211	1295211	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0059047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	163	545	0				ENST00000310581	NM_198253.2																																																																																	
MTOR	2475	MSKCC	GRCh37	1	11294226	11294226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0059047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	80	542	0	ENST00000361445.4:c.2305C>T	p.Arg769Cys	p.R769C	ENST00000361445	NM_004958.3	769	Cgc/Tgc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245594	41245595	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs80357753		P-0059047-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	72	487	0	ENST00000357654.3:c.1953dup	p.Lys652GlufsTer21	p.K652Efs*21	ENST00000357654	NM_007294.3	651	-/G																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0002413-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			413	118	208	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0002413-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			782	398	419	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0002413-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	66	139	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0002413-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			712	220	388	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160588	56160588	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002413-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			513	179	287	0	ENST00000399503.3:c.862C>T	p.Arg288Ter	p.R288*	ENST00000399503	NM_005921.1	288	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120185	70120185	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002413-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			222	286	194	0	ENST00000245479.2:c.1187A>T	p.His396Leu	p.H396L	ENST00000245479	NM_000346.3	396	cAc/cTc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120196	70120196	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002413-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	297	213	0	ENST00000245479.2:c.1198G>T	p.Glu400Ter	p.E400*	ENST00000245479	NM_000346.3	400	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112173603	112173603	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002413-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			606	198	388	0	ENST00000257430.4:c.2314del	p.Thr772LeufsTer5	p.T772Lfs*5	ENST00000257430	NM_000038.5	771	gAa/ga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276788	15276788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	268	403	0	ENST00000263388.2:c.5477G>T	p.Cys1826Phe	p.C1826F	ENST00000263388	NM_000435.2	1826	tGc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	289	407	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873695	35873695	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	235	393	0	ENST00000303115.3:c.651G>C	p.Trp217Cys	p.W217C	ENST00000303115	NM_002185.3	217	tgG/tgC																																																																															
RET	5979	MSKCC	GRCh37	10	43604494	43604494	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762472027		P-0004249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	212	408	0	ENST00000355710.3:c.1079G>A	p.Arg360Gln	p.R360Q	ENST00000355710	NM_020975.4	360	cGg/cAg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94163109	94163109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	374	486	0	ENST00000323929.3:c.2038G>A	p.Val680Ile	p.V680I	ENST00000323929	NM_005591.3	680	Gta/Ata																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18762517	18762517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	256	436	0	ENST00000266497.5:c.4013A>G	p.Tyr1338Cys	p.Y1338C	ENST00000266497		1338	tAc/tGc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589808	28589808	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs568745490		P-0004249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	236	430	0	ENST00000241453.7:c.2572G>A	p.Glu858Lys	p.E858K	ENST00000241453	NM_004119.2	858	Gaa/Aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48586250	48586250	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	280	340	0	ENST00000342988.3:c.919G>T	p.Glu307Ter	p.E307*	ENST00000342988	NM_005359.5	307	Gag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115421	115115422	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTTTTGCAAAAGGGTTGTTGTCTATTTTTAACTGGGTTAT			P-0004249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	151	483	0	ENST00000257566.3:c.865_904dup	p.Gly302AspfsTer38	p.G302Dfs*38	ENST00000257566	NM_016569.3	302	ggt/gATAACCCAGTTAAAAATAGACAACAACCCTTTTGCAAAAGgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578220	7578221	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TTCTGTCATCCAAATACTCCACACG			P-0004249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	267	476	0	ENST00000269305.4:c.604_628dup	p.Asn210ThrfsTer7	p.N210Tfs*7	ENST00000269305	NM_001126112.2	210	aac/aCGTGTGGAGTATTTGGATGACAGAAac																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497346	149497346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75748462		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	141	495	0	ENST00000261799.4:c.2972G>A	p.Arg991His	p.R991H	ENST00000261799	NM_002609.3	991	cGc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419930	41419930	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	119	609	0	ENST00000373198.4:c.391del	p.Gln131LysfsTer17	p.Q131Kfs*17	ENST00000373198	NM_133170.3	131	Caa/aa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	183	614	1	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	125	316	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216560	2216560	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777525091		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	245	625	0	ENST00000398665.3:c.2204C>T	p.Thr735Met	p.T735M	ENST00000398665	NM_032482.2	735	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175166	112175166	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371113837		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	112	300	0	ENST00000257430.4:c.3875C>T	p.Thr1292Met	p.T1292M	ENST00000257430	NM_000038.5	1292	aCg/aTg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	144	505	5	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89857935	89857935	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11646374		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	125	493	0	ENST00000389301.3:c.1235C>T	p.Ala412Val	p.A412V	ENST00000389301	NM_000135.2	412	gCg/gTg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78923252	78923252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	65	561	2	ENST00000306801.3:c.3275C>T	p.Ala1092Val	p.A1092V	ENST00000306801	NM_020761.2	1092	gCc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	60	296	1	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	159	572	0	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346884	73346884	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	347	537	3	ENST00000377767.4:c.1333del	p.Ser445HisfsTer20	p.S445Hfs*20	ENST00000377767	NM_014953.3	445	Tca/ca																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	69	347	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	121	610	1	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37061889	37061889	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1064793519		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	150	590	2	ENST00000231790.2:c.973C>T	p.Arg325Trp	p.R325W	ENST00000231790	NM_000249.3	325	Cgg/Tgg																																																																															
TET1	80312	MSKCC	GRCh37	10	70446284	70446284	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	151	669	6	ENST00000373644.4:c.5230del	p.Arg1744GlufsTer18	p.R1744Efs*18	ENST00000373644	NM_030625.2	1742	Aaa/aa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	134	395	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274794	123274794	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913478		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	143	496	0	ENST00000358487.5:c.1124A>G	p.Tyr375Cys	p.Y375C	ENST00000358487	NM_000141.4	375	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	211	630	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
CIC	23152	MSKCC	GRCh37	19	42794441	42794441	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	104	617	2	ENST00000575354.2:c.1526del	p.Pro509HisfsTer14	p.P509Hfs*14	ENST00000575354	NM_015125.3	507	cgC/cg																																																																															
TET2	54790	MSKCC	GRCh37	4	106194030	106194030	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1298652864		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	213	552	0	ENST00000380013.4:c.4492C>T	p.Arg1498Cys	p.R1498C	ENST00000380013	NM_001127208.2	1498	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	43	137	1	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157488293	157488293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750810656		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	151	337	0	ENST00000346085.5:c.2999C>T	p.Ala1000Val	p.A1000V	ENST00000346085	NM_020732.3	1000	gCg/gTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42796882	42796883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761345552		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	102	525	6	ENST00000575354.2:c.3347dup	p.Ser1117LysfsTer34	p.S1117Kfs*34	ENST00000575354	NM_015125.3	1114	gcc/gCcc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777635	9777635	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773473376		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	103	497	0	ENST00000377346.4:c.971G>A	p.Arg324His	p.R324H	ENST00000377346	NM_005026.3	324	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105938	27105938	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs750044693		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	98	371	0	ENST00000324856.7:c.5549A>G	p.Asp1850Gly	p.D1850G	ENST00000324856	NM_006015.4	1850	gAc/gGc																																																																															
IL10	3586	MSKCC	GRCh37	1	206945758	206945758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	118	393	0	ENST00000423557.1:c.23G>A	p.Cys8Tyr	p.C8Y	ENST00000423557	NM_000572.2	8	tGt/tAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989523	212989523	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	186	653	0	ENST00000342788.4:c.188T>C	p.Leu63Pro	p.L63P	ENST00000342788	NM_005235.2	63	cTg/cCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928301	178928301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	135	499	0	ENST00000263967.3:c.1487C>T	p.Ala496Val	p.A496V	ENST00000263967	NM_006218.2	496	gCc/gTc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430444	181430444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	150	614	0	ENST00000325404.1:c.296C>T	p.Ala99Val	p.A99V	ENST00000325404	NM_003106.3	99	gCg/gTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1266594	1266594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	112	589	0	ENST00000310581.5:c.2639C>T	p.Ala880Val	p.A880V	ENST00000310581	NM_198253.2	880	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112128203	112128203	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	218	584	1	ENST00000257430.4:c.706C>T	p.Gln236Ter	p.Q236*	ENST00000257430	NM_000038.5	236	Cag/Tag																																																																															
IRF4	3662	MSKCC	GRCh37	6	401501	401501	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771669183		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	71	460	0	ENST00000380956.4:c.823C>T	p.Arg275Trp	p.R275W	ENST00000380956	NM_001195286.1	275	Cgg/Tgg																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158714	26158714	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	53	104	0	ENST00000289316.2:c.317A>G	p.Glu106Gly	p.E106G	ENST00000289316	NM_138720.2	106	gAg/gGg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710608	117710608	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	216	570	0	ENST00000368508.3:c.1664A>G	p.His555Arg	p.H555R	ENST00000368508	NM_002944.2	555	cAc/cGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873383	151873383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	167	576	0	ENST00000262189.6:c.9155C>T	p.Pro3052Leu	p.P3052L	ENST00000262189	NM_170606.2	3052	cCt/cTt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371972	55371972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	54	207	0	ENST00000297316.4:c.662C>T	p.Thr221Met	p.T221M	ENST00000297316	NM_022454.3	221	aCg/aTg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570292	87570292	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1463968979		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	130	545	0	ENST00000277120.3:c.2032G>A	p.Ala678Thr	p.A678T	ENST00000277120		678	Gcg/Acg																																																																															
ABL1	25	MSKCC	GRCh37	9	133760520	133760520	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1240583398		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	76	528	0	ENST00000318560.5:c.2843C>T	p.Pro948Leu	p.P948L	ENST00000318560	NM_005157.4	948	cCc/cTc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771818	135771818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	183	692	0	ENST00000298552.3:c.3299G>A	p.Ser1100Asn	p.S1100N	ENST00000298552	NM_001162426.1	1100	aGc/aAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925366	114925366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	168	693	0	ENST00000543371.1:c.1444C>A	p.Pro482Thr	p.P482T	ENST00000543371	NM_001198531.1	482	Cca/Aca																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575134	64575134	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057521110		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	100	467	0	ENST00000337652.1:c.688G>A	p.Gly230Arg	p.G230R	ENST00000337652	NM_130803.2	230	Gga/Aga																																																																															
PAK1	5058	MSKCC	GRCh37	11	77064603	77064603	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767363828		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	154	578	0	ENST00000356341.3:c.814C>T	p.Arg272Trp	p.R272W	ENST00000356341	NM_002576.4	272	Cgg/Tgg																																																																															
EED	8726	MSKCC	GRCh37	11	85961377	85961377	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772993565		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	171	485	0	ENST00000263360.6:c.154C>T	p.Arg52Cys	p.R52C	ENST00000263360	NM_003797.3	52	Cgc/Tgc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195289	102195289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs186307109		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	268	813	1	ENST00000263464.3:c.49G>A	p.Ala17Thr	p.A17T	ENST00000263464	NM_001165.4	17	Gcc/Acc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195395	102195395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762397304		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	238	765	0	ENST00000263464.3:c.155G>A	p.Arg52His	p.R52H	ENST00000263464	NM_001165.4	52	cGt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445338	49445338	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	107	374	1	ENST00000301067.7:c.2128C>A	p.Pro710Thr	p.P710T	ENST00000301067	NM_003482.3	710	Cca/Aca																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987168	36987168	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1160967358		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	70	287	0	ENST00000354822.5:c.521G>A	p.Gly174Asp	p.G174D	ENST00000354822	NM_001079668.2	174	gGc/gAc																																																																															
AKT1	207	MSKCC	GRCh37	14	105243083	105243083	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1396308032		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	107	599	0	ENST00000349310.3:c.200G>A	p.Arg67Gln	p.R67Q	ENST00000349310	NM_001014432.1	67	cGg/cAg																																																																															
MGA	23269	MSKCC	GRCh37	15	41988331	41988331	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139403711		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	216	819	0	ENST00000219905.7:c.1123G>A	p.Gly375Arg	p.G375R	ENST00000219905	NM_001164273.1	375	Gga/Aga																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14026059	14026059	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753728949		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	142	372	0	ENST00000311895.7:c.1019G>A	p.Arg340Gln	p.R340Q	ENST00000311895	NM_005236.2	340	cGa/cAa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56865783	56865783	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148421556		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	228	744	3	ENST00000308159.5:c.1115G>A	p.Arg372Gln	p.R372Q	ENST00000308159	NM_014669.4	372	cGg/cAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992222	72992222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	129	754	0	ENST00000268489.5:c.1823G>A	p.Ser608Asn	p.S608N	ENST00000268489	NM_006885.3	608	aGc/aAc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969933	81969933	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752209691		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	165	718	3	ENST00000359376.3:c.3002G>A	p.Arg1001His	p.R1001H	ENST00000359376	NM_002661.3	1001	cGc/cAc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89839744	89839744	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs965355095		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	159	658	1	ENST00000389301.3:c.1949T>C	p.Leu650Pro	p.L650P	ENST00000389301	NM_000135.2	650	cTg/cCg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489825	40489825	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	202	654	1	ENST00000264657.5:c.601C>T	p.Gln201Ter	p.Q201*	ENST00000264657	NM_139276.2	201	Cag/Tag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435828	56435828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs995358248		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	133	443	0	ENST00000407977.2:c.1309C>T	p.Arg437Trp	p.R437W	ENST00000407977		437	Cgg/Tgg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216740	2216740	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1285057389		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	138	355	0	ENST00000398665.3:c.2384C>T	p.Pro795Leu	p.P795L	ENST00000398665	NM_032482.2	795	cCg/cTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245810	5245810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	147	551	0	ENST00000357368.4:c.965C>T	p.Ala322Val	p.A322V	ENST00000357368	NM_002850.3	322	gCg/gTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7125379	7125379	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778982272		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	245	758	1	ENST00000302850.5:c.3173C>T	p.Thr1058Met	p.T1058M	ENST00000302850	NM_000208.2	1058	aCg/aTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291058	10291058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	87	427	0	ENST00000340748.4:c.413C>T	p.Pro138Leu	p.P138L	ENST00000340748		138	cCc/cTc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279645	18279645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	130	536	2	ENST00000222254.8:c.1918C>T	p.Arg640Trp	p.R640W	ENST00000222254	NM_005027.3	640	Cgg/Tgg																																																																															
CIC	23152	MSKCC	GRCh37	19	42793502	42793502	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755293924		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	147	641	1	ENST00000575354.2:c.1304C>T	p.Thr435Met	p.T435M	ENST00000575354	NM_015125.3	435	aCg/aTg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855573	45855573	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746618110		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	86	562	3	ENST00000391945.4:c.2084G>A	p.Arg695His	p.R695H	ENST00000391945	NM_000400.3	695	cGc/cAc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909524	50909524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	175	712	0	ENST00000440232.2:c.1328G>A	p.Arg443Gln	p.R443Q	ENST00000440232	NM_002691.3	443	cGg/cAg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017802	31017802	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780662350		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	115	593	0	ENST00000375687.4:c.664G>A	p.Glu222Lys	p.E222K	ENST00000375687	NM_015338.5	222	Gag/Aag																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650388	48650388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	150	382	0	ENST00000376670.3:c.358G>A	p.Ala120Thr	p.A120T	ENST00000376670	NM_002049.3	120	Gcc/Acc																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123499636	123499636	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs111033623		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	177	330	0	ENST00000371139.4:c.163C>T	p.Arg55Ter	p.R55*	ENST00000371139	NM_001114937.2	55	Cga/Tga																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652118	36652118	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	146	536	0	ENST00000244741.5:c.243del	p.Arg83GlyfsTer65	p.R83Gfs*65	ENST00000244741	NM_000389.4	80	acG/ac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373950	118373951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	145	710	0	ENST00000534358.1:c.7349dup	p.Leu2450PhefsTer10	p.L2450Ffs*10	ENST00000534358	NM_005933.3	2448	tct/tcTt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940552	49940553	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	125	746	0	ENST00000296474.3:c.490_491del	p.Phe164LeufsTer5	p.F164Lfs*5	ENST00000296474	NM_002447.2	164	TTc/c																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914422	32914422	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	281	877	1	ENST00000380152.3:c.5934del	p.Phe1978LeufsTer26	p.F1978Lfs*26	ENST00000380152		1977	aTt/at																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972893	32972893	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	136	386	0	ENST00000380152.3:c.10248del	p.Lys3416AsnfsTer11	p.K3416Nfs*11	ENST00000380152		3415	Aaa/aa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270530	98270530	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1057518664		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	49	221	2	ENST00000331920.6:c.114del	p.Leu39CysfsTer41	p.L39Cfs*41	ENST00000331920	NM_000264.3	38	ggG/gg																																																																															
CBFB	865	MSKCC	GRCh37	16	67063358	67063359	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	101	411	0	ENST00000412916.2:c.54dup	p.Arg19Ter	p.R19*	ENST00000412916		16	-/T																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532709	187532710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	167	664	0	ENST00000441802.2:c.9683dup	p.Val3229CysfsTer3	p.V3229Cfs*3	ENST00000441802	NM_005245.3	3228	cct/ccCt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165216	32165216	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs767972771		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	128	492	1	ENST00000375023.3:c.4912del	p.Leu1638CysfsTer68	p.L1638Cfs*68	ENST00000375023	NM_004557.3	1638	Ctg/tg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829895	72829895	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	164	821	1	ENST00000268489.5:c.6686del	p.Pro2229LeufsTer26	p.P2229Lfs*26	ENST00000268489	NM_006885.3	2229	cCt/ct																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40375459	40375459	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	215	1201	0	ENST00000293328.3:c.491del	p.Lys164SerfsTer17	p.K164Sfs*17	ENST00000293328	NM_012448.3	164	aAg/ag																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931452	131931453	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	104	409	0	ENST00000265335.6:c.2164_2165del	p.Lys722GlyfsTer5	p.K722Gfs*5	ENST00000265335		719	ctAAaa/ctaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261245	16261246	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	90	349	0	ENST00000375759.3:c.8516dup	p.Ala2840GlyfsTer7	p.A2840Gfs*7	ENST00000375759	NM_015001.2	2837	atc/atCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	168	281	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	206	423	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692884	89692884	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121909222		P-0005298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	316	188	1	ENST00000371953.3:c.368A>G	p.His123Arg	p.H123R	ENST00000371953	NM_000314.4	123	cAc/cGc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411492	63411492	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	358	391	0	ENST00000330258.3:c.1675G>T	p.Glu559Ter	p.E559*	ENST00000330258	NM_152424.3	559	Gaa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603046	48603077	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGGCGGCTACTGCACAAGCTGCAGCAGCTG	GCAGGCGGCTACTGCACAAGCTGCAGCAGCTG	-			P-0005298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	214	337	0	ENST00000342988.3:c.1347_1378del	p.Gln449HisfsTer34	p.Q449Hfs*34	ENST00000342988	NM_005359.5	449	caGCAGGCGGCTACTGCACAAGCTGCAGCAGCTGcc/cacc																																																																															
APC	324	MSKCC	GRCh37	5	112175779	112175780	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	162	314	0	ENST00000257430.4:c.4490dup	p.Asp1498ArgfsTer16	p.D1498Rfs*16	ENST00000257430	NM_000038.5	1496	-/C																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933593	39933594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	131	196	0	ENST00000378444.4:c.1005dup	p.Ser336LeufsTer45	p.S336Lfs*45	ENST00000378444	NM_001123385.1	335	-/C																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0005762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	501	455	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907131	32907131	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1616	671	552	0	ENST00000380152.3:c.1516T>G	p.Phe506Val	p.F506V	ENST00000380152		506	Ttc/Gtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0006764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	10	513	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	15	527	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	117	364	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0007683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	225	261	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747342068		P-0007683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	165	347	0	ENST00000269305.4:c.394A>G	p.Lys132Glu	p.K132E	ENST00000269305	NM_001126112.2	132	Aag/Gag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137779	64137779	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	129	502	0	ENST00000334205.4:c.1880A>G	p.Lys627Arg	p.K627R	ENST00000334205	NM_003942.2	627	aAa/aGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0008540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	212	846	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0008540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	76	808	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	55	733	1	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564764	86564764	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	77	1269	3	ENST00000274376.6:c.496G>T	p.Glu166Ter	p.E166*	ENST00000274376	NM_002890.2	166	Gag/Tag																																																																															
POLE	5426	MSKCC	GRCh37	12	133220049	133220049	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	66	960	3	ENST00000320574.5:c.4388T>C	p.Phe1463Ser	p.F1463S	ENST00000320574	NM_006231.2	1463	tTt/tCt																																																																															
APC	324	MSKCC	GRCh37	5	112154980	112154980	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	94	966	0	ENST00000257430.4:c.1251del	p.Cys417TrpfsTer37	p.C417Wfs*37	ENST00000257430	NM_000038.5	417	tgT/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577069	7577075	+	frameshift_variant	Frame_Shift_Del	DEL	CGGAGAT	CGGAGAT	-			P-0008540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	112	976	0	ENST00000269305.4:c.863_869del	p.Asn288ThrfsTer55	p.N288Tfs*55	ENST00000269305	NM_001126112.2	288	aATCTCCGc/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0009903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	174	563	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0009903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	118	673	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175021	112175021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	103	459	0	ENST00000257430.4:c.3730C>T	p.Gln1244Ter	p.Q1244*	ENST00000257430	NM_000038.5	1244	Caa/Taa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143235903	143235903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	194	465	0	ENST00000262992.4:c.385G>A	p.Val129Ile	p.V129I	ENST00000262992	NM_001101669.1	129	Gtc/Atc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925329	114925329	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	125	803	0	ENST00000543371.1:c.1407C>G	p.Cys469Trp	p.C469W	ENST00000543371	NM_001198531.1	469	tgC/tgG																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0010009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	101	311	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0010009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	163	338	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829404	72829404	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200268844		P-0010009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1804	166	669	3	ENST00000268489.5:c.7177G>A	p.Ala2393Thr	p.A2393T	ENST00000268489	NM_006885.3	2393	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0010147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	1012	482	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0010147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	472	355	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0010147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	121	288	2	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	814	594	1	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384651	31384651	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	766	563	1	ENST00000328111.2:c.1359del	p.Leu454SerfsTer136	p.L454Sfs*136	ENST00000328111	NM_006892.3	451	gaG/ga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180045839	180045839	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140041761		P-0010147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	383	435	0	ENST00000261937.6:c.2932G>A	p.Asp978Asn	p.D978N	ENST00000261937	NM_182925.4	978	Gac/Aac																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27840041	27840041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1462	564	601	1	ENST00000328488.2:c.53G>A	p.Arg18His	p.R18H	ENST00000328488	NM_003533.2	18	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175542	112175543	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	194	392	0	ENST00000257430.4:c.4252dup	p.Ile1418AsnfsTer5	p.I1418Nfs*5	ENST00000257430	NM_000038.5	1417	-/A																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261677	16261677	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745687072		P-0010367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	145	216	0	ENST00000375759.3:c.8942C>T	p.Thr2981Met	p.T2981M	ENST00000375759	NM_015001.2	2981	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112174577	112174577	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587783029		P-0010367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	172	501	0	ENST00000257430.4:c.3286C>T	p.Gln1096Ter	p.Q1096*	ENST00000257430	NM_000038.5	1096	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0010367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	125	303	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285670	46285670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	160	406	0	ENST00000334344.6:c.5030G>T	p.Arg1677Leu	p.R1677L	ENST00000334344	NM_152641.2	1677	cGa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0010367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	122	413	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029511	16029511	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	200	628	3	ENST00000268712.3:c.1519C>T	p.Arg507Ter	p.R507*	ENST00000268712	NM_006311.3	507	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40727129	40727129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	140	483	0	ENST00000373198.4:c.3835T>C	p.Phe1279Leu	p.F1279L	ENST00000373198	NM_133170.3	1279	Ttc/Ctc																																																																															
BARD1	580	MSKCC	GRCh37	2	215645697	215645697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	52	382	0	ENST00000260947.4:c.901G>A	p.Glu301Lys	p.E301K	ENST00000260947	NM_000465.2	301	Gag/Aag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663346	227663346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1024227751		P-0010497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	27	188	0	ENST00000305123.5:c.109G>A	p.Glu37Lys	p.E37K	ENST00000305123	NM_005544.2	37	Gag/Aag																																																																															
ATR	545	MSKCC	GRCh37	3	142286928	142286928	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751709684		P-0010497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	144	371	0	ENST00000350721.4:c.128G>A	p.Arg43Gln	p.R43Q	ENST00000350721	NM_001184.3	43	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0010497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	22	148	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TET1	80312	MSKCC	GRCh37	10	70404581	70404582	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0010497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	57	463	0	ENST00000373644.4:c.2095_2096delinsAT	p.Glu699Ile	p.E699I	ENST00000373644	NM_030625.2	699	GAa/ATa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0010497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	94	192	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561190	9561190	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762286985		P-0010497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	76	438	0	ENST00000353224.5:c.592G>A	p.Asp198Asn	p.D198N	ENST00000353224	NM_177990.2	198	Gat/Aat																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317529	1317529	+	downstream_gene_variant	3'Flank	SNP	T	T	G			P-0010497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1120	95	485	0				ENST00000381566																																																																																		
FBXW7	55294	MSKCC	GRCh37	4	153253861	153253862	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	49	216	0	ENST00000281708.4:c.871dup	p.Tyr291LeufsTer26	p.Y291Lfs*26	ENST00000281708	NM_033632.3	291	tat/tTat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	433	416	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0012680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	1082	482	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
INSR	3643	MSKCC	GRCh37	19	7172331	7172331	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758151117		P-0012680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	315	467	1	ENST00000302850.5:c.1238G>A	p.Arg413His	p.R413H	ENST00000302850	NM_000208.2	413	cGt/cAt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162622230	162622230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	543	510	0	ENST00000366898.1:c.467G>T	p.Arg156Ile	p.R156I	ENST00000366898	NM_004562.2	156	aGa/aTa																																																																															
RAF1	5894	MSKCC	GRCh37	3	12650282	12650282	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	680	570	0	ENST00000251849.4:c.564T>G	p.Ser188Arg	p.S188R	ENST00000251849	NM_002880.3	188	agT/agG																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118362519	118362519	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	352	469	0	ENST00000534358.1:c.4880G>C	p.Cys1627Ser	p.C1627S	ENST00000534358	NM_005933.3	1627	tGt/tCt																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870831	12870831	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	284	168	0	ENST00000228872.4:c.58C>T	p.Gln20Ter	p.Q20*	ENST00000228872	NM_004064.3	20	Cag/Tag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287412	46287412	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0012680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	204	361	2	ENST00000334344.6:c.5272-1G>T		p.X1758_splice	ENST00000334344	NM_152641.2	1758																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32188307	32188308	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0012680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1095	676	640	0	ENST00000375023.3:c.1033_1034del	p.Ser345TrpfsTer8	p.S345Wfs*8	ENST00000375023	NM_004557.3	345	AGt/t																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0013897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	169	592	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0013897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	400	542	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535427	66535427	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1472517358		P-0013897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	62	232	0	ENST00000273854.3:c.34C>T	p.Arg12Trp	p.R12W	ENST00000273854	NM_004439.5	12	Cgg/Tgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264066389		P-0013897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	197	992	3	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0013897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	213	307	0	ENST00000257430.4:c.3944C>G	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tGa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591127	67591129	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0013897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	95	397	1	ENST00000274335.5:c.1721_1723del	p.Arg574del	p.R574del	ENST00000274335		574	AGA/-																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729880	30729881	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0013897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	72	238	0	ENST00000359013.4:c.1478_1479del	p.Lys493ArgfsTer3	p.K493Rfs*3	ENST00000359013	NM_001024847.2	492	gtAAaa/gtaa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222726	5222726	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779918003		P-0013897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	36	217	0	ENST00000357368.4:c.3077G>A	p.Arg1026His	p.R1026H	ENST00000357368	NM_002850.3	1026	cGc/cAc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518737	176518737	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753812223		P-0013897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	132	511	0	ENST00000292408.4:c.655C>T	p.Arg219Cys	p.R219C	ENST00000292408	NM_213647.1	219	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0014416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	44	443	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0014416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	292	630	1	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	261	225	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0014416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	55	252	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29554307	29554307	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0014416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1590	137	552	0	ENST00000358273.4:c.2323G>C	p.Glu775Gln	p.E775Q	ENST00000358273	NM_001042492.2	775	Gag/Cag																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546560	9546560	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771840400		P-0014416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	42	323	0	ENST00000353224.5:c.1462C>T	p.Arg488Ter	p.R488*	ENST00000353224	NM_177990.2	488	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249440	153249440	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	148	422	0	ENST00000281708.4:c.1338G>T	p.Trp446Cys	p.W446C	ENST00000281708	NM_033632.3	446	tgG/tgT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69011937	69011937	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	177	514	0	ENST00000288368.4:c.2574A>C	p.Lys858Asn	p.K858N	ENST00000288368	NM_024870.2	858	aaA/aaC																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285809	87285809	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1371476425		P-0014416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	33	434	1	ENST00000277120.3:c.146C>T	p.Ser49Phe	p.S49F	ENST00000277120		49	tCt/tTt																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804206	46804209	+	protein_altering_variant	In_Frame_Del	DEL	GCGG	GCGG	A			P-0014416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1154	132	489	0	ENST00000290295.7:c.798_801delinsT	p.Arg268del	p.R268del	ENST00000290295	NM_006361.5	266	aaCCGC/aaT																																																																															
SPEN	23013	MSKCC	GRCh37	1	16203108	16203108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	151	503	0	ENST00000375759.3:c.816C>A	p.Ser272Arg	p.S272R	ENST00000375759	NM_015001.2	272	agC/agA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	432	573	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs886039484		P-0014754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	671	805	0	ENST00000269305.4:c.643A>G	p.Ser215Gly	p.S215G	ENST00000269305	NM_001126112.2	215	Agt/Ggt																																																																															
BARD1	580	MSKCC	GRCh37	2	215646173	215646173	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	167	449	0	ENST00000260947.4:c.425C>G	p.Ser142Ter	p.S142*	ENST00000260947	NM_000465.2	142	tCa/tGa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797242	32797242	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771932254		P-0014754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1482	274	701	1	ENST00000374899.4:c.1867C>T	p.Arg623Ter	p.R623*	ENST00000374899	NM_018833.2	623	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0014774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	210	481	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873066	134873066	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762457030		P-0014774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	161	533	1	ENST00000398015.3:c.1370C>T	p.Pro457Leu	p.P457L	ENST00000398015	NM_004441.4	457	cCg/cTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81350062	81350062	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs759145490		P-0014774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	81	291	0	ENST00000222390.5:c.1270C>T	p.Arg424Cys	p.R424C	ENST00000222390	NM_000601.4	424	Cgt/Tgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306713	41306713	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1357	81	526	0	ENST00000373198.4:c.946G>C	p.Gly316Arg	p.G316R	ENST00000373198	NM_133170.3	316	Ggg/Cgg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52595892	52595892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	80	539	2	ENST00000394830.3:c.4023G>A	p.Met1341Ile	p.M1341I	ENST00000394830	NM_018313.4	1341	atG/atA																																																																															
BRAF	673	MSKCC	GRCh37	7	140481477	140481477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1328	145	640	2	ENST00000288602.6:c.1331G>A	p.Arg444Gln	p.R444Q	ENST00000288602	NM_004333.4	444	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0014908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	333	623	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913476		P-0014908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	97	584	1	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																															
ALK	238	MSKCC	GRCh37	2	30143044	30143044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	35	956	5	ENST00000389048.3:c.482C>T	p.Ala161Val	p.A161V	ENST00000389048	NM_004304.4	161	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175475	112175476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTTGAGA			P-0014908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	16	325	0	ENST00000257430.4:c.4185_4192dup	p.Ser1398IlefsTer20	p.S1398Ifs*20	ENST00000257430	NM_000038.5	1395	agt/agTTTTGAGAt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845970	156845970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	35	720	1	ENST00000524377.1:c.1600C>T	p.Pro534Ser	p.P534S	ENST00000524377	NM_002529.3	534	Cct/Tct																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100732	8100732	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs148835259		P-0014908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	114	789	0	ENST00000346208.3:c.706C>G	p.Pro236Ala	p.P236A	ENST00000346208		236	Ccc/Gcc																																																																															
POLE	5426	MSKCC	GRCh37	12	133256167	133256167	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1060500782		P-0014908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	22	569	0	ENST00000320574.5:c.494A>C	p.Lys165Thr	p.K165T	ENST00000320574	NM_006231.2	165	aAa/aCa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438148	56438148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	534	949	1	ENST00000407977.2:c.845G>A	p.Gly282Glu	p.G282E	ENST00000407977		282	gGg/gAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144027	11144027	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	198	778	1	ENST00000344626.4:c.3608G>T	p.Arg1203Leu	p.R1203L	ENST00000344626	NM_003072.3	1203	cGc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112174172	112174173	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGATAGTTT			P-0014908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	34	442	0	ENST00000257430.4:c.2883_2892dup	p.Asn965Ter	p.N965*	ENST00000257430	NM_000038.5	961	aat/aATGATAGTTTat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0033566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	94	403	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0033566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	49	353	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
PGR	5241	MSKCC	GRCh37	11	100933406	100933406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150584881		P-0033566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	16	461	0	ENST00000325455.5:c.1984G>A	p.Val662Ile	p.V662I	ENST00000325455	NM_001202474.3	662	Gtt/Att																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610002	81610002	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150602845		P-0033566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	12	340	0	ENST00000298171.2:c.1600C>T	p.Arg534Cys	p.R534C	ENST00000298171	NM_000369.2	534	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0033566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	70	727	2	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
TOP1	7150	MSKCC	GRCh37	20	39709868	39709870	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs748165145		P-0033566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	19	198	0	ENST00000361337.2:c.504_506del	p.Glu169del	p.E169del	ENST00000361337	NM_003286.2	165	ctAGAa/cta																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779184	3779184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	64	503	1	ENST00000262367.5:c.5864C>T	p.Ala1955Val	p.A1955V	ENST00000262367	NM_004380.2	1955	gCg/gTg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193094272	193094272	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs121434265		P-0033566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	33	400	0	ENST00000367435.3:c.162C>G	p.Tyr54Ter	p.Y54*	ENST00000367435	NM_024529.4	54	taC/taG																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411510	63411510	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	53	782	1	ENST00000330258.3:c.1657del	p.Ala553GlnfsTer9	p.A553Qfs*9	ENST00000330258	NM_152424.3	553	Gca/ca																																																																															
ATRX	546	MSKCC	GRCh37	X	76872097	76872097	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0033566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	29	416	0	ENST00000373344.5:c.5550C>G	p.Tyr1850Ter	p.Y1850*	ENST00000373344	NM_000489.3	1850	taC/taG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	157	318	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	162	314	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0034866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	151	407	2	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916143	9916143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762659685		P-0034866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	69	308	0	ENST00000330684.3:c.2146G>A	p.Ala716Thr	p.A716T	ENST00000330684	NM_001134407.1	716	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0034866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	108	173	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524631	187524631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	71	473	0	ENST00000441802.2:c.11049G>T	p.Leu3683Phe	p.L3683F	ENST00000441802	NM_005245.3	3683	ttG/ttT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0034866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	189	392	0	ENST00000269305.4:c.560-2A>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
ANKRD11	29123	MSKCC	GRCh37	16	89349528	89349528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	62	497	1	ENST00000301030.4:c.3422G>A	p.Ser1141Asn	p.S1141N	ENST00000301030	NM_001256183.1	1141	aGc/aAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933368	39933368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	139	518	0	ENST00000378444.4:c.1231C>T	p.Arg411Trp	p.R411W	ENST00000378444	NM_001123385.1	411	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051577-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			379	79	472	2	ENST00000269305.4:c.772G>C	p.Glu258Gln	p.E258Q	ENST00000269305	NM_001126112.2	258	Gaa/Caa																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0051577-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			342	43	372	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259315	16259315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051577-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			543	54	712	0	ENST00000375759.3:c.6580G>T	p.Ala2194Ser	p.A2194S	ENST00000375759	NM_015001.2	2194	Gca/Tca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0054896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	57	427	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41268766	41268766	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	27	447	1	ENST00000349496.5:c.1004A>T	p.Lys335Ile	p.K335I	ENST00000349496	NM_001904.3	335	aAa/aTa																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0054896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	20	292	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0054896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	145	1063	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112175912	112175912	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201801		P-0054896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	16	224	0	ENST00000257430.4:c.4621C>T	p.Gln1541Ter	p.Q1541*	ENST00000257430	NM_000038.5	1541	Cag/Tag																																																																															
PMS1	5378	MSKCC	GRCh37	2	190732604	190732604	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs759191350		P-0054896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	67	492	1	ENST00000441310.2:c.2422C>G	p.Leu808Val	p.L808V	ENST00000441310	NM_000534.4	808	Ctg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0054937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	573	875	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602590	10602590	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	381	739	0	ENST00000171111.5:c.988A>G	p.Thr330Ala	p.T330A	ENST00000171111	NM_203500.1	330	Acc/Gcc																																																																															
APC	324	MSKCC	GRCh37	5	112175485	112175485	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	180	410	0	ENST00000257430.4:c.4194del	p.Arg1399ValfsTer16	p.R1399Vfs*16	ENST00000257430	NM_000038.5	1398	agT/ag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0054939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	149	448	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149456893	149456893	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3829986		P-0054939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	186	882	0	ENST00000286301.3:c.835G>A	p.Val279Met	p.V279M	ENST00000286301	NM_005211.3	279	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786204041		P-0054939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	174	899	1	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492772	56492773	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0054939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	196	804	0	ENST00000407977.2:c.166dup	p.Asp56GlyfsTer19	p.D56Gfs*19	ENST00000407977		56	gac/gGac																																																																															
YAP1	10413	MSKCC	GRCh37	11	102100436	102100436	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	81	573	0	ENST00000282441.5:c.1280A>T	p.Asp427Val	p.D427V	ENST00000282441	NM_001130145.2	427	gAt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0055081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	286	822	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175429	112175430	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0055081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	72	383	0	ENST00000257430.4:c.4142dup	p.Leu1382ThrfsTer4	p.L1382Tfs*4	ENST00000257430	NM_000038.5	1380	acc/aCcc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120461	70120461	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	158	1098	0	ENST00000245479.2:c.1464del	p.Ile489SerfsTer34	p.I489Sfs*34	ENST00000245479	NM_000346.3	488	tCc/tc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435691	18435691	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0055081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	62	238	0	ENST00000266497.5:c.676G>T	p.Glu226Ter	p.E226*	ENST00000266497		226	Gag/Tag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251755	212251755	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	51	511	0	ENST00000342788.4:c.3304T>G	p.Phe1102Val	p.F1102V	ENST00000342788	NM_005235.2	1102	Ttt/Gtt																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24158957	24158957	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0055081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	91	740	0	ENST00000263121.7:c.629A>C	p.Glu210Ala	p.E210A	ENST00000263121	NM_003073.3	210	gAg/gCg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505636	186505723	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGATCTACCTACCAATCGTGAAAACTATATTCACAGGTGAGAAGCCAGCATCTTGGCTGTATTGAAAAAAATTCATACGTTTTTCTAC	TGATCTACCTACCAATCGTGAAAACTATATTCACAGGTGAGAAGCCAGCATCTTGGCTGTATTGAAAAAAATTCATACGTTTTTCTAC	-			P-0055081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	105	432	0	ENST00000323963.5:c.1046_1079+54del		p.X349_splice	ENST00000323963		349																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66467826	66467875	+	frameshift_variant	Frame_Shift_Del	DEL	TTACAGGTCCCCAGTCCTCCAGGAAGGCTGTTGCAGTCCCGCAGGGTAAA	TTACAGGTCCCCAGTCCTCCAGGAAGGCTGTTGCAGTCCCGCAGGGTAAA	-			P-0055081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	45	478	0	ENST00000273854.3:c.394_443del	p.Phe132GlyfsTer4	p.F132Gfs*4	ENST00000273854	NM_004439.5	132	TTTACCCTGCGGGACTGCAACAGCCTTCCTGGAGGACTGGGGACCTGTAAg/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0055470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	104	410	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646594	23646594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	37	548	0	ENST00000261584.4:c.1273G>A	p.Val425Met	p.V425M	ENST00000261584	NM_024675.3	425	Gtg/Atg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691936	30691938	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0055470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	27	310	0	ENST00000359013.4:c.517_519del	p.Ile173del	p.I173del	ENST00000359013	NM_001024847.2	171	aaCATc/aac																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176104158	176104158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	28	343	0	ENST00000367669.3:c.956C>T	p.Ser319Phe	p.S319F	ENST00000367669	NM_022457.5	319	tCt/tTt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16021323	16021323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	33	273	0	ENST00000268712.3:c.1934G>T	p.Arg645Leu	p.R645L	ENST00000268712	NM_006311.3	645	cGt/cTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266059	41266235	+	inframe_deletion	In_Frame_Del	DEL	AAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAAC	AAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAAC	-			P-0055470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	12	366	0	ENST00000349496.5:c.59_235del	p.Ala20_Gln78del	p.A20_Q78del	ENST00000349496	NM_001904.3	19	aAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACaa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0055836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	121	996	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593387	48593387	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0055836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	83	379	0	ENST00000342988.3:c.1140-2A>T		p.X380_splice	ENST00000342988	NM_005359.5	380																																																																																
APC	324	MSKCC	GRCh37	5	112162945	112162945	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0055836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	27	346	1	ENST00000257430.4:c.1548+1G>A		p.X516_splice	ENST00000257430	NM_000038.5	516																																																																																
SOX9	6662	MSKCC	GRCh37	17	70120291	70120292	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0055836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	177	879	0	ENST00000245479.2:c.1294dup	p.Tyr432LeufsTer146	p.Y432Lfs*146	ENST00000245479	NM_000346.3	431	-/T																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912172	114912172	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0055836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	126	656	0	ENST00000543371.1:c.1242C>A	p.Tyr414Ter	p.Y414*	ENST00000543371	NM_001198531.1	414	taC/taA																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748161	43748161	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0055836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	90	651	0	ENST00000382044.4:c.2645C>A	p.Ser882Ter	p.S882*	ENST00000382044	NM_001141980.1	882	tCa/tAa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356095	66356095	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0055836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	64	534	0	ENST00000273854.3:c.1402G>T	p.Ala468Ser	p.A468S	ENST00000273854	NM_004439.5	468	Gct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0056133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	207	280	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0056133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	153	202	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0056133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	88	318	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
MGA	23269	MSKCC	GRCh37	15	42052635	42052635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	141	341	1	ENST00000219905.7:c.7306C>T	p.Arg2436Cys	p.R2436C	ENST00000219905	NM_001164273.1	2436	Cgt/Tgt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214636	5214636	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs532712500		P-0056133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	225	693	1	ENST00000357368.4:c.4430G>A	p.Arg1477His	p.R1477H	ENST00000357368	NM_002850.3	1477	cGt/cAt																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612929	228612929	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200220156		P-0056133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	383	543	0	ENST00000366696.1:c.98C>T	p.Thr33Ile	p.T33I	ENST00000366696	NM_003493.2	33	aCt/aTt																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	38	451	1	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	78	924	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355374	15355374	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781044333		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	60	732	2	ENST00000263377.2:c.2249C>T	p.Pro750Leu	p.P750L	ENST00000263377	NM_058243.2	750	cCg/cTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	40	430	0	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat																																																																															
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	92	814	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	74	413	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
MYC	4609	MSKCC	GRCh37	8	128752965	128752965	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	149	524	0	ENST00000377970.2:c.1126G>C	p.Val376Leu	p.V376L	ENST00000377970	NM_002467.4	376	Gtc/Ctc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	191	1110	13	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4101272	4101272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370799450		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	201	865	0	ENST00000262948.5:c.535C>T	p.Arg179Trp	p.R179W	ENST00000262948	NM_030662.3	179	Cgg/Tgg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121913407		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	203	462	0	ENST00000349496.5:c.133T>G	p.Ser45Ala	p.S45A	ENST00000349496	NM_001904.3	45	Tct/Gct																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	86	429	1	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432040	121432040	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771108132		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	241	1180	2	ENST00000257555.6:c.787C>T	p.Arg263Cys	p.R263C	ENST00000257555		263	Cgt/Tgt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741573	17741573	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1285231710		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	103	277	0	ENST00000250003.3:c.244C>T	p.Arg82Cys	p.R82C	ENST00000250003	NM_002478.4	82	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	109	746	1	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																															
ATR	545	MSKCC	GRCh37	3	142188237	142188237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	21	410	0	ENST00000350721.4:c.6494C>T	p.Ala2165Val	p.A2165V	ENST00000350721	NM_001184.3	2165	gCc/gTc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931452	131931453	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	82	515	1	ENST00000265335.6:c.2164_2165del	p.Lys722GlyfsTer5	p.K722Gfs*5	ENST00000265335		719	ctAAaa/ctaa																																																																															
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	38	495	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	173	649	0	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103754	47103755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC	rs749901643		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	58	677	0	ENST00000409792.3:c.6190_6191dup	p.Asp2064GlufsTer84	p.D2064Efs*84	ENST00000409792	NM_014159.6	2064	gac/gaGAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903755	114903755	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	150	666	1	ENST00000543371.1:c.763del	p.His255IlefsTer3	p.H255Ifs*3	ENST00000543371	NM_001198531.1	253	atC/at																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728564	190728565	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	63	512	0	ENST00000441310.2:c.1958dup	p.Ile654AspfsTer21	p.I654Dfs*21	ENST00000441310	NM_000534.4	651	aga/agAa																																																																															
CALR	811	MSKCC	GRCh37	19	13050364	13050364	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	156	815	0	ENST00000316448.5:c.320del	p.Gly107AlafsTer4	p.G107Afs*4	ENST00000316448	NM_004343.3	106	Ggg/gg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029453	16029454	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	79	549	1	ENST00000268712.3:c.1576_1577del	p.Glu526LysfsTer9	p.E526Kfs*9	ENST00000268712	NM_006311.3	526	GAa/a																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435777	56435777	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1055597951		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	130	933	0	ENST00000407977.2:c.1360C>T	p.Arg454Cys	p.R454C	ENST00000407977		454	Cgc/Tgc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631917	90631918	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs780120934		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	73	907	7	ENST00000330062.3:c.435dup	p.Thr146AspfsTer126	p.T146Dfs*126	ENST00000330062	NM_002168.2	145	-/G																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	158	689	2	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870972	12870973	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	102	536	0	ENST00000228872.4:c.201_202del	p.His67GlnfsTer57	p.H67Qfs*57	ENST00000228872	NM_004064.3	67	CAc/c																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275291	41275291	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750554859		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	118	605	0	ENST00000349496.5:c.1457G>A	p.Arg486His	p.R486H	ENST00000349496	NM_001904.3	486	cGc/cAc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911141	29911141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	116	866	0	ENST00000376809.5:c.440A>G	p.Tyr147Cys	p.Y147C	ENST00000376809	NM_002116.7	147	tAc/tGc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	181	664	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	333	973	6	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24133968	24133968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	108	450	0	ENST00000263121.7:c.119G>A	p.Arg40Gln	p.R40Q	ENST00000263121	NM_003073.3	40	cGa/cAa																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652125	36652125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374965936		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	174	1010	0	ENST00000244741.5:c.247C>T	p.Arg83Trp	p.R83W	ENST00000244741	NM_000389.4	83	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	87	1111	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111191	193111191	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	33	361	0	ENST00000367435.3:c.724G>T	p.Gly242Ter	p.G242*	ENST00000367435	NM_024529.4	242	Gga/Tga																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38139044	38139044	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	120	619	0	ENST00000317025.8:c.3559C>T	p.Arg1187Ter	p.R1187*	ENST00000317025	NM_023034.1	1187	Cga/Tga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37665993	37665993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	92	681	0	ENST00000447079.4:c.2645G>A	p.Arg882Gln	p.R882Q	ENST00000447079	NM_015083.1	882	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434562	49434562	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	100	1073	0	ENST00000301067.7:c.6991del	p.Leu2331Ter	p.L2331*	ENST00000301067	NM_003482.3	2331	Ctg/tg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953633	32953633	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1361953431		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	68	401	1	ENST00000380152.3:c.8940del	p.Glu2981LysfsTer7	p.E2981Kfs*7	ENST00000380152		2978	tcA/tc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214713	36214714	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	123	871	4	ENST00000222270.7:c.3145dup	p.Ala1049GlyfsTer39	p.A1049Gfs*39	ENST00000222270	NM_014727.1	1047	cgg/cGgg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11291364	11291364	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1375320238		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	111	563	2	ENST00000361445.4:c.2642G>A	p.Arg881His	p.R881H	ENST00000361445	NM_004958.3	881	cGc/cAc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965809	25965809	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1285225904		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	166	799	1	ENST00000435504.4:c.3397C>T	p.Arg1133Trp	p.R1133W	ENST00000435504		1133	Cgg/Tgg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522740	67522741	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	22	327	0	ENST00000274335.5:c.244dup	p.Ile82AsnfsTer24	p.I82Nfs*24	ENST00000274335		79	-/A																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428251	33428251	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150134822		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	146	705	1	ENST00000335858.7:c.536G>A	p.Arg179His	p.R179H	ENST00000335858	NM_133629.2	179	cGc/cAc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852254	63852254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	155	794	0	ENST00000279873.7:c.3032C>T	p.Pro1011Leu	p.P1011L	ENST00000279873	NM_032199.2	1011	cCg/cTg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137309085	137309085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777558913		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	201	1093	0	ENST00000481739.1:c.692C>T	p.Pro231Leu	p.P231L	ENST00000481739	NM_002957.4	231	cCg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434186	49434186	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370115365		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	224	1200	0	ENST00000301067.7:c.7367G>A	p.Arg2456His	p.R2456H	ENST00000301067	NM_003482.3	2456	cGc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70342361	70342361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	160	730	0	ENST00000374080.3:c.1252C>T	p.Arg418Cys	p.R418C	ENST00000374080		418	Cgt/Tgt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47155366	47155366	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs750924110		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	99	413	0	ENST00000409792.3:c.4715C>T	p.Ser1572Leu	p.S1572L	ENST00000409792	NM_014159.6	1572	tCg/tTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918180	50918180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	50	1076	3	ENST00000440232.2:c.2497C>T	p.Arg833Cys	p.R833C	ENST00000440232	NM_002691.3	833	Cgc/Tgc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53247487	53247487	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146232504		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	131	767	1	ENST00000375401.3:c.322C>T	p.Arg108Trp	p.R108W	ENST00000375401	NM_004187.3	108	Cgg/Tgg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120491718	120491718	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	58	393	0	ENST00000256646.2:c.2511T>A	p.Cys837Ter	p.C837*	ENST00000256646	NM_024408.3	837	tgT/tgA																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514052	69514052	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	183	840	2	ENST00000294312.3:c.629G>T	p.Arg210Met	p.R210M	ENST00000294312	NM_005117.2	210	aGg/aTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946481	71946481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	173	884	0	ENST00000298229.2:c.2645G>A	p.Arg882His	p.R882H	ENST00000298229	NM_001567.3	882	cGt/cAt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487322	56487322	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775042280		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	110	532	0	ENST00000267101.3:c.1468C>T	p.Arg490Cys	p.R490C	ENST00000267101	NM_001982.3	490	Cgc/Tgc																																																																															
POLE	5426	MSKCC	GRCh37	12	133201519	133201519	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	193	1053	0	ENST00000320574.5:c.6719G>T	p.Gly2240Val	p.G2240V	ENST00000320574	NM_006231.2	2240	gGa/gTa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727514	88727514	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770278704		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	136	734	2	ENST00000360948.2:c.265C>T	p.Arg89Cys	p.R89C	ENST00000360948	NM_001012338.2	89	Cgc/Tgc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15935651	15935651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	121	509	0	ENST00000268712.3:c.7282C>T	p.Leu2428Phe	p.L2428F	ENST00000268712	NM_006311.3	2428	Ctc/Ttc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40462577	40462577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	168	852	1	ENST00000345506.4:c.2275G>T	p.Asp759Tyr	p.D759Y	ENST00000345506	NM_003152.3	759	Gat/Tat																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619160	1619160	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1349192826		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	204	992	0	ENST00000344749.5:c.1400G>A	p.Ser467Asn	p.S467N	ENST00000344749	NM_001136139.2	467	aGc/aAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222958	5222958	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781437725		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	80	555	0	ENST00000357368.4:c.2845C>T	p.Arg949Cys	p.R949C	ENST00000357368	NM_002850.3	949	Cgc/Tgc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945454	17945454	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	182	969	0	ENST00000458235.1:c.2276G>T	p.Cys759Phe	p.C759F	ENST00000458235	NM_000215.3	759	tGc/tTc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25976401	25976401	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	87	537	0	ENST00000435504.4:c.1142+2T>C		p.X381_splice	ENST00000435504		381																																																																																
ALK	238	MSKCC	GRCh37	2	30143051	30143051	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367875912		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	94	1005	0	ENST00000389048.3:c.475G>A	p.Gly159Arg	p.G159R	ENST00000389048	NM_004304.4	159	Ggg/Agg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39239439	39239439	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	38	600	0	ENST00000402219.2:c.2218A>G	p.Lys740Glu	p.K740E	ENST00000402219	NM_005633.3	740	Aaa/Gaa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098927	178098927	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	72	513	0	ENST00000397062.3:c.118A>G	p.Ser40Gly	p.S40G	ENST00000397062	NM_006164.4	40	Agt/Ggt																																																																															
CASP8	841	MSKCC	GRCh37	2	202141599	202141599	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	52	448	0	ENST00000358485.4:c.887T>C	p.Leu296Pro	p.L296P	ENST00000358485	NM_001080125.1	296	cTg/cCg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248719	212248719	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	97	559	0	ENST00000342788.4:c.3548T>C	p.Leu1183Ser	p.L1183S	ENST00000342788	NM_005235.2	1183	tTg/tCg																																																																															
INHA	3623	MSKCC	GRCh37	2	220439701	220439702	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	100	1246	1	ENST00000243786.2:c.562_563del	p.Leu188AlafsTer22	p.L188Afs*22	ENST00000243786	NM_002191.3	185	gCT/g																																																																															
SRC	6714	MSKCC	GRCh37	20	36031152	36031152	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	178	774	1	ENST00000358208.4:c.1271G>T	p.Gly424Val	p.G424V	ENST00000358208		424	gGt/gTt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713220	30713222	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	95	484	0	ENST00000359013.4:c.628_630del	p.Ile210del	p.I210del	ENST00000359013	NM_001024847.2	207	gTCAtc/gtc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539149	187539149	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	115	610	0	ENST00000441802.2:c.8591T>C	p.Met2864Thr	p.M2864T	ENST00000441802	NM_005245.3	2864	aTg/aCg																																																																															
APC	324	MSKCC	GRCh37	5	112154880	112154880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	55	866	1	ENST00000257430.4:c.1151G>A	p.Ser384Asn	p.S384N	ENST00000257430	NM_000038.5	384	aGt/aAt																																																																															
APC	324	MSKCC	GRCh37	5	112170862	112170862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs1060503318		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	106	527	0	ENST00000257430.4:c.1958G>T	p.Arg653Met	p.R653M	ENST00000257430	NM_000038.5	653	aGg/aTg																																																																															
E2F3	1871	MSKCC	GRCh37	6	20480092	20480092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	82	474	0	ENST00000346618.3:c.409G>A	p.Glu137Lys	p.E137K	ENST00000346618	NM_001949.4	137	Gag/Aag																																																																															
FYN	2534	MSKCC	GRCh37	6	112025220	112025220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	129	639	1	ENST00000368678.4:c.529G>A	p.Glu177Lys	p.E177K	ENST00000368678		177	Gag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949040	151949040	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	48	569	0	ENST00000262189.6:c.1605A>G	p.Ile535Met	p.I535M	ENST00000262189	NM_170606.2	535	atA/atG																																																																															
NBN	4683	MSKCC	GRCh37	8	90949256	90949256	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	22	315	0	ENST00000265433.3:c.2232del	p.Phe744LeufsTer7	p.F744Lfs*7	ENST00000265433	NM_002485.4	744	ttT/tt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772940	135772940	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs576476807		P-0056136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	56	595	1	ENST00000298552.3:c.2683G>A	p.Val895Ile	p.V895I	ENST00000298552	NM_001162426.1	895	Gtt/Att																																																																															
ATRX	546	MSKCC	GRCh37	X	76937011	76937011	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0056291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	34	169	0	ENST00000373344.5:c.3736+1G>T		p.X1246_splice	ENST00000373344	NM_000489.3	1246																																																																																
MYCL	4610	MSKCC	GRCh37	1	40366766	40366776	+	frameshift_variant	Frame_Shift_Del	DEL	GCGAGCCGGTC	GCGAGCCGGTC	-			P-0056291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	124	373	0	ENST00000397332.2:c.421_431del	p.Asp141SerfsTer54	p.D141Sfs*54	ENST00000397332	NM_001033082.2	141	GACCGGCTCGCt/t																																																																															
TP53	7157	MSKCC	GRCh37	17	7577513	7577514	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTGATGATG			P-0056291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	228	616	0	ENST00000269305.4:c.759_767dup	p.Ile254_Thr256dup	p.I254_T256dup	ENST00000269305	NM_001126112.2	254	aca/acCATCATCACa																																																																															
APC	324	MSKCC	GRCh37	5	112175322	112175323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0056291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	147	275	0	ENST00000257430.4:c.4032dup	p.Glu1345ArgfsTer9	p.E1345Rfs*9	ENST00000257430	NM_000038.5	1344	tca/tcAa																																																																															
SMO	6608	MSKCC	GRCh37	7	128845134	128845134	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1247135717		P-0056291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	272	864	2	ENST00000249373.3:c.628G>A	p.Val210Met	p.V210M	ENST00000249373	NM_005631.4	210	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0056317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	122	450	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0056317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	88	578	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0056317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	375	837	3	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0056317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	86	387	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711340	114711340	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	56	324	0	ENST00000543371.1:c.355G>T	p.Gly119Ter	p.G119*	ENST00000543371	NM_001198531.1	119	Gga/Tga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678383	88678383	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	134	963	0	ENST00000360948.2:c.1153G>C	p.Gly385Arg	p.G385R	ENST00000360948	NM_001012338.2	385	Ggc/Cgc																																																																															
BARD1	580	MSKCC	GRCh37	2	215645993	215645993	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	40	502	0	ENST00000260947.4:c.605C>G	p.Ser202Cys	p.S202C	ENST00000260947	NM_000465.2	202	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0057055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	34	620	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0057055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	22	348	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0057055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	18	272	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100944	27100944	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	27	458	0	ENST00000324856.7:c.4226A>C	p.Gln1409Pro	p.Q1409P	ENST00000324856	NM_006015.4	1409	cAg/cCg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72163773	72163773	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	23	338	0	ENST00000357731.5:c.585G>C	p.Arg195Ser	p.R195S	ENST00000357731	NM_173808.2	195	agG/agC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0058462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	13	327	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	86	643	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268144	153268144	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs920052554		P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	85	384	0	ENST00000281708.4:c.664C>T	p.Arg222Ter	p.R222*	ENST00000281708	NM_033632.3	222	Cga/Tga																																																																															
TERT	7015	MSKCC	GRCh37	5	1293661	1293661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1427	134	1528	1	ENST00000310581.5:c.1340G>A	p.Arg447His	p.R447H	ENST00000310581	NM_198253.2	447	cGc/cAc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86629103	86629103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753769946		P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	29	207	0	ENST00000274376.6:c.848G>A	p.Arg283His	p.R283H	ENST00000274376	NM_002890.2	283	cGt/cAt																																																																															
TET2	54790	MSKCC	GRCh37	4	106197563	106197563	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745668941		P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	61	328	0	ENST00000380013.4:c.5896C>T	p.Arg1966Cys	p.R1966C	ENST00000380013	NM_001127208.2	1966	Cgt/Tgt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	54	407	5	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
SMO	6608	MSKCC	GRCh37	7	128829040	128829042	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-	rs772132544		P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	13	66	0	ENST00000249373.3:c.67_69del	p.Leu23del	p.L23del	ENST00000249373	NM_005631.4	16	ggGCTg/ggg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276860	15276861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs753725730		P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	100	909	8	ENST00000263388.2:c.5404dup	p.Ala1802GlyfsTer8	p.A1802Gfs*8	ENST00000263388	NM_000435.2	1802	gct/gGct																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427588	72427588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	45	361	0	ENST00000477973.2:c.900G>A	p.Arg301His	p.R301H	ENST00000477973	NM_012234.5	301	cGt/cAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467589	66467589	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772693559		P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	44	332	0	ENST00000273854.3:c.680G>A	p.Arg227His	p.R227H	ENST00000273854	NM_004439.5	227	cGt/cAt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265479	152265479	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766779326		P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	82	646	1	ENST00000206249.3:c.932C>T	p.Thr311Met	p.T311M	ENST00000206249	NM_000125.3	311	aCg/aTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440643	56440643	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	129	809	1	ENST00000407977.2:c.575del	p.Pro192ArgfsTer11	p.P192Rfs*11	ENST00000407977		192	cCg/cg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2202758	2202758	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1197029182		P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	83	710	1	ENST00000398665.3:c.767G>A	p.Arg256Gln	p.R256Q	ENST00000398665	NM_032482.2	256	cGg/cAg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	99	663	2	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	78	512	0	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527817	157527817	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	58	558	2	ENST00000346085.5:c.5547del	p.Leu1850Ter	p.L1850*	ENST00000346085	NM_020732.3	1848	Ccc/cc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646980	23646981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1060502767		P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	92	711	2	ENST00000261584.4:c.886dup	p.Met296AsnfsTer7	p.M296Nfs*7	ENST00000261584	NM_024675.3	296	atg/aAtg																																																																															
MGA	23269	MSKCC	GRCh37	15	42046641	42046642	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	51	314	0	ENST00000219905.7:c.7018_7019del	p.Val2340ArgfsTer4	p.V2340Rfs*4	ENST00000219905	NM_001164273.1	2339	TGt/t																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426973	49426973	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	121	938	1	ENST00000301067.7:c.11515del	p.Gln3839SerfsTer42	p.Q3839Sfs*42	ENST00000301067	NM_003482.3	3839	Cag/ag																																																																															
AXL	558	MSKCC	GRCh37	19	41748899	41748899	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750167315		P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	124	851	0	ENST00000301178.4:c.1424G>A	p.Arg475Gln	p.R475Q	ENST00000301178	NM_021913.4	475	cGa/cAa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857958	9857958	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140536516		P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	71	699	0	ENST00000330684.3:c.3443C>T	p.Pro1148Leu	p.P1148L	ENST00000330684	NM_001134407.1	1148	cCg/cTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103525619	103525619	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs574826021		P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	49	304	0	ENST00000355739.4:c.2890C>T	p.Arg964Trp	p.R964W	ENST00000355739	NM_000123.3	964	Cgg/Tgg																																																																															
MGA	23269	MSKCC	GRCh37	15	41988304	41988304	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs563448726		P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	107	562	0	ENST00000219905.7:c.1096C>T	p.Arg366Cys	p.R366C	ENST00000219905	NM_001164273.1	366	Cgt/Tgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045137	47045137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	96	431	0	ENST00000329236.7:c.2144G>A	p.Arg715Gln	p.R715Q	ENST00000329236	NM_001204466.1	715	cGa/cAa																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50488225	50488225	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	73	556	0	ENST00000394963.4:c.1139A>G	p.Asp380Gly	p.D380G	ENST00000394963	NM_003076.4	380	gAc/gGc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481363	56481363	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	120	873	3	ENST00000267101.3:c.555del	p.Cys186ValfsTer20	p.C186Vfs*20	ENST00000267101	NM_001982.3	184	Ccc/cc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19261516	19261516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	112	881	0	ENST00000162023.5:c.29G>T	p.Arg10Leu	p.R10L	ENST00000162023		10	cGc/cTc																																																																															
REL	5966	MSKCC	GRCh37	2	61144060	61144060	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	72	453	0	ENST00000295025.8:c.443T>C	p.Val148Ala	p.V148A	ENST00000295025	NM_002908.2	148	gTg/gCg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264984	46264985	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	45	434	0	ENST00000371998.3:c.1860dup	p.Leu621IlefsTer10	p.L621Ifs*10	ENST00000371998		618	-/A																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164754	36164754	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1177469638		P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1423	162	1267	1	ENST00000300305.3:c.1121C>T	p.Ala374Val	p.A374V	ENST00000300305		374	gCc/gTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56174829	56174830	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	58	299	0	ENST00000399503.3:c.1992_1993del	p.Thr665SerfsTer31	p.T665Sfs*31	ENST00000399503	NM_005921.1	663	gTA/g																																																																															
SESN1	27244	MSKCC	GRCh37	6	109415144	109415147	+	frameshift_variant	Frame_Shift_Del	DEL	TTTC	TTTC	-	rs1308319847		P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1470	137	919	0	ENST00000436639.2:c.130_133del	p.Glu44HisfsTer18	p.E44Hfs*18	ENST00000436639	NM_014454.2	44	GAAAca/ca																																																																															
CARD11	84433	MSKCC	GRCh37	7	2951853	2951853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200858011		P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	217	992	1	ENST00000396946.4:c.3097G>A	p.Ala1033Thr	p.A1033T	ENST00000396946	NM_032415.4	1033	Gcg/Acg																																																																															
ABL1	25	MSKCC	GRCh37	9	133730281	133730281	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	94	612	0	ENST00000318560.5:c.347T>A	p.Ile116Asn	p.I116N	ENST00000318560	NM_005157.4	116	aTc/aAc																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0058696-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	57	307	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0058696-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	89	431	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0058696-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	159	545	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																															
POLE	5426	MSKCC	GRCh37	12	133256799	133256799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058696-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	41	398	0	ENST00000320574.5:c.295C>T	p.Pro99Ser	p.P99S	ENST00000320574	NM_006231.2	99	Ccc/Tcc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120469155	120469156	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTACTGGC			P-0058696-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	45	537	0	ENST00000256646.2:c.3964_3971dup	p.Asn1324LysfsTer29	p.N1324Kfs*29	ENST00000256646	NM_024408.3	1324	aac/aaGCCAGTAAc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111886026	111886027	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0058696-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			472	43	549	0	ENST00000341259.2:c.1648_1649delinsTT	p.Ala550Phe	p.A550F	ENST00000341259	NM_005475.2	550	GCc/TTc																																																																															
ALK	238	MSKCC	GRCh37	2	30143396	30143396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058696-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			320	97	478	0	ENST00000389048.3:c.130C>T	p.Leu44Phe	p.L44F	ENST00000389048	NM_004304.4	44	Ctc/Ttc																																																																															
SDHA	6389	MSKCC	GRCh37	5	235312	235316	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAG	CAGAG	-			P-0058696-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	21	410	0	ENST00000264932.6:c.1121_1125del	p.Glu374AlafsTer34	p.E374Afs*34	ENST00000264932	NM_004168.2	373	cCAGAG/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0058898-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			153	162	430	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0058898-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	216	444	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097721	27097721	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058898-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	185	359	0	ENST00000324856.7:c.3310G>T	p.Glu1104Ter	p.E1104*	ENST00000324856	NM_006015.4	1104	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174286	112174286	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058898-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	65	380	0	ENST00000257430.4:c.2995C>T	p.Gln999Ter	p.Q999*	ENST00000257430	NM_000038.5	999	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0058898-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	17	326	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18466933	18466933	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058898-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	54	250	0	ENST00000266497.5:c.1072G>C	p.Asp358His	p.D358H	ENST00000266497		358	Gat/Cat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916948	178916948	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs863225460		P-0058898-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	110	264	0	ENST00000263967.3:c.335T>A	p.Ile112Asn	p.I112N	ENST00000263967	NM_006218.2	112	aTc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0055579-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			9	46	394	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0055579-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			49	88	490	1	ENST00000275493.2:c.2303_2311dup	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
TERT	7015	MSKCC	GRCh37	5	1255441	1255441	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055579-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			95	24	420	1	ENST00000310581.5:c.3118G>T	p.Ala1040Ser	p.A1040S	ENST00000310581	NM_198253.2	1040	Gcc/Tcc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0057860-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			276	35	348	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
INSR	3643	MSKCC	GRCh37	19	7119467	7119467	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057860-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			315	81	443	0	ENST00000302850.5:c.3787G>C	p.Glu1263Gln	p.E1263Q	ENST00000302850	NM_000208.2	1263	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578418	7578418	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057860-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			191	248	550	0	ENST00000269305.4:c.512A>G	p.Glu171Gly	p.E171G	ENST00000269305	NM_001126112.2	171	gAg/gGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242481	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAGCAA	TTAAGAGAAGCAA	C	rs397509368		P-0057860-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			209	221	373	0	ENST00000275493.2:c.2239_2251delinsC	p.Leu747_Thr751delinsPro	p.L747_T751delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAAca/Cca																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518088	176518088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057860-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			205	198	480	0	ENST00000292408.4:c.586C>T	p.Arg196Cys	p.R196C	ENST00000292408	NM_213647.1	196	Cgc/Tgc																																																																															
ERF	2077	MSKCC	GRCh37	19	42752739	42752739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057860-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	37	526	0	ENST00000222329.4:c.1525G>A	p.Glu509Lys	p.E509K	ENST00000222329	NM_006494.2	509	Gag/Aag																																																																															
ERF	2077	MSKCC	GRCh37	19	42752793	42752793	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057860-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			571	52	554	0	ENST00000222329.4:c.1471G>C	p.Asp491His	p.D491H	ENST00000222329	NM_006494.2	491	Gac/Cac																																																																															
ERF	2077	MSKCC	GRCh37	19	42754622	42754622	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057860-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			556	47	491	0	ENST00000222329.4:c.118G>C	p.Glu40Gln	p.E40Q	ENST00000222329	NM_006494.2	40	Gag/Cag																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155408	185155408	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057860-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			202	127	491	0	ENST00000265026.3:c.649A>T	p.Ile217Phe	p.I217F	ENST00000265026	NM_004721.4	217	Atc/Ttc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0058293-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			174	53	348	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat																																																																															
SPEN	23013	MSKCC	GRCh37	1	16247440	16247440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058293-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			334	74	370	0	ENST00000375759.3:c.1711G>C	p.Glu571Gln	p.E571Q	ENST00000375759	NM_015001.2	571	Gag/Cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0058293-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			175	269	274	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108202638	108202638	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058293-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			167	42	304	0	ENST00000278616.4:c.7662T>A	p.His2554Gln	p.H2554Q	ENST00000278616	NM_000051.3	2554	caT/caA																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94178989	94178989	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058293-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			137	36	234	0	ENST00000323929.3:c.1854G>T	p.Met618Ile	p.M618I	ENST00000323929	NM_005591.3	618	atG/atT																																																																															
YAP1	10413	MSKCC	GRCh37	11	102098199	102098199	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0058293-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			171	76	288	0	ENST00000282441.5:c.1164-1G>T		p.X388_splice	ENST00000282441	NM_001130145.2	388																																																																																
TMPRSS2	7113	MSKCC	GRCh37	21	42843885	42843885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058293-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			273	19	365	0	ENST00000398585.3:c.1034G>T	p.Trp345Leu	p.W345L	ENST00000398585	NM_001135099.1	345	tGg/tTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513338	106513338	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058293-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			283	69	357	0	ENST00000359195.3:c.2242G>T	p.Asp748Tyr	p.D748Y	ENST00000359195	NM_002649.2	748	Gat/Tat																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978728	70978728	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058293-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			193	32	319	0	ENST00000276594.2:c.925G>T	p.Gly309Cys	p.G309C	ENST00000276594	NM_024504.3	309	Ggt/Tgt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245367	53245367	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0058293-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			169	44	342	0	ENST00000375401.3:c.670G>T	p.Glu224Ter	p.E224*	ENST00000375401	NM_004187.3	224	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0058599-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			248	41	316	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23539105	23539105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	539	456	0	ENST00000380871.4:c.334G>A	p.Ala112Thr	p.A112T	ENST00000380871	NM_006167.3	112	Gcc/Acc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19258640	19258640	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs533071900		P-0058661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	522	426	0	ENST00000162023.5:c.260C>T	p.Thr87Met	p.T87M	ENST00000162023		87	aCg/aTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226361	2226361	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	511	493	0	ENST00000398665.3:c.3841G>T	p.Glu1281Ter	p.E1281*	ENST00000398665	NM_032482.2	1281	Gag/Tag																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150913847	150913847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	196	262	0	ENST00000271640.5:c.490G>A	p.Val164Ile	p.V164I	ENST00000271640	NM_001145415.1	164	Gtt/Att																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943769	71943769	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	486	479	0	ENST00000298229.2:c.1812G>A	p.Trp604Ter	p.W604*	ENST00000298229	NM_001567.3	604	tgG/tgA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447033	49447033	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	266	447	0	ENST00000301067.7:c.911A>T	p.Lys304Ile	p.K304I	ENST00000301067	NM_003482.3	304	aAa/aTa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347200	347200	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			97	254	354	0	ENST00000262320.3:c.1811del	p.Arg604LysfsTer101	p.R604Kfs*101	ENST00000262320	NM_003502.3	604	aGa/aa																																																																															
NF1	4763	MSKCC	GRCh37	17	29508451	29508451	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0058661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			35	126	203	0	ENST00000358273.4:c.598A>T	p.Lys200Ter	p.K200*	ENST00000358273	NM_001042492.2	200	Aaa/Taa																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33689768	33689768	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			102	348	356	0	ENST00000394566.1:c.1059C>A	p.Asp353Glu	p.D353E	ENST00000394566	NM_001104587.1	353	gaC/gaA																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66526480	66526480	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0058661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	554	429	0	ENST00000358598.2:c.1036A>T	p.Lys346Ter	p.K346*	ENST00000358598	NM_212471.2	346	Aag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575223	48575224	+	stop_gained	Nonsense_Mutation	DNP	TG	TG	CT			P-0058661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			39	68	224	0	ENST00000342988.3:c.417_418delinsCT	p.Gly140Ter	p.G140*	ENST00000342988	NM_005359.5	139	ccTGga/ccCTga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610083	10610083	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	435	399	0	ENST00000171111.5:c.627G>T	p.Met209Ile	p.M209I	ENST00000171111	NM_203500.1	209	atG/atT																																																																															
XPO1	7514	MSKCC	GRCh37	2	61710178	61710178	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	173	240	0	ENST00000401558.2:c.2726C>G	p.Ala909Gly	p.A909G	ENST00000401558	NM_003400.3	909	gCt/gGt																																																																															
TOP1	7150	MSKCC	GRCh37	20	39726901	39726901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			138	144	305	0	ENST00000361337.2:c.899G>A	p.Cys300Tyr	p.C300Y	ENST00000361337	NM_003286.2	300	tGt/tAt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46280006	46280006	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	215	397	0	ENST00000371998.3:c.3932A>T	p.Tyr1311Phe	p.Y1311F	ENST00000371998		1311	tAt/tTt																																																																															
FYN	2534	MSKCC	GRCh37	6	112025257	112025257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			89	297	324	0	ENST00000368678.4:c.492G>T	p.Leu164Phe	p.L164F	ENST00000368678		164	ttG/ttT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508291	106508291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			277	261	463	0	ENST00000359195.3:c.285C>A	p.His95Gln	p.H95Q	ENST00000359195	NM_002649.2	95	caC/caA																																																																															
AGO2	27161	MSKCC	GRCh37	8	141557656	141557656	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	474	446	0	ENST00000220592.5:c.1659G>T	p.Gln553His	p.Q553H	ENST00000220592	NM_012154.3	553	caG/caT																																																																															
ATRX	546	MSKCC	GRCh37	X	76778780	76778780	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0058661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			23	65	153	0	ENST00000373344.5:c.6799A>C	p.Thr2267Pro	p.T2267P	ENST00000373344	NM_000489.3	2267	Act/Cct																																																																															
BTK	695	MSKCC	GRCh37	X	100615678	100615678	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058661-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			79	174	224	0	ENST00000308731.7:c.654G>T	p.Lys218Asn	p.K218N	ENST00000308731	NM_000061.2	218	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730882026		P-0058722-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			346	88	303	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393576	139393576	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774262180		P-0058722-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			388	113	431	0	ENST00000277541.6:c.6070G>A	p.Val2024Ile	p.V2024I	ENST00000277541	NM_017617.3	2024	Gta/Ata																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0058722-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			381	119	301	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467661	66467661	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058722-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			412	51	421	0	ENST00000273854.3:c.608G>T	p.Gly203Val	p.G203V	ENST00000273854	NM_004439.5	203	gGa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0058897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			166	90	225	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0058897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	164	371	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542048	187542048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058897-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			687	84	530	0	ENST00000441802.2:c.5692G>A	p.Val1898Ile	p.V1898I	ENST00000441802	NM_005245.3	1898	Gtc/Atc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0058901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	68	328	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
EZH1	2145	MSKCC	GRCh37	17	40864438	40864442	+	frameshift_variant	Frame_Shift_Del	DEL	CGCAG	CGCAG	-			P-0058901-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			525	70	397	0	ENST00000428826.2:c.1266_1270del	p.Cys423SerfsTer14	p.C423Sfs*14	ENST00000428826		422	ctCTGCGta/ctta																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0058905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			139	28	282	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535395	66535395	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	91	336	0	ENST00000273854.3:c.66del	p.Ile23SerfsTer39	p.I23Sfs*39	ENST00000273854	NM_004439.5	22	ccC/cc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99152267	99152267	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	42	294	0	ENST00000074304.5:c.346A>C	p.Lys116Gln	p.K116Q	ENST00000074304	NM_001134224.1	116	Aaa/Caa																																																																															
APC	324	MSKCC	GRCh37	5	112174777	112174777	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0058905-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	52	417	0	ENST00000257430.4:c.3486T>G	p.Tyr1162Ter	p.Y1162*	ENST00000257430	NM_000038.5	1162	taT/taG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0058907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			513	44	424	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129128	64129128	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058907-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			479	57	356	0	ENST00000334205.4:c.666G>A	p.Trp222Ter	p.W222*	ENST00000334205	NM_003942.2	222	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs730881999		P-0058908-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	43	425	0	ENST00000269305.4:c.380C>G	p.Ser127Cys	p.S127C	ENST00000269305	NM_001126112.2	127	tCc/tGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922324	178922324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793732		P-0058945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			99	40	199	0	ENST00000263967.3:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000263967	NM_006218.2	365	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0058945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			131	150	469	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720726	89720726	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs878853944		P-0058945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			18	14	65	0	ENST00000371953.3:c.877G>T	p.Gly293Ter	p.G293*	ENST00000371953	NM_000314.4	293	Gga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101118	41101118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751886972		P-0058945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			489	171	471	2	ENST00000373198.4:c.1238C>T	p.Ala413Val	p.A413V	ENST00000373198	NM_133170.3	413	gCg/gTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42058999	42058999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755132381		P-0058945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			133	164	412	0	ENST00000219905.7:c.8719G>A	p.Asp2907Asn	p.D2907N	ENST00000219905	NM_001164273.1	2907	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912654		P-0058945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			144	205	451	0	ENST00000269305.4:c.469G>A	p.Val157Ile	p.V157I	ENST00000269305	NM_001126112.2	157	Gtc/Atc																																																																															
TERT	7015	MSKCC	GRCh37	5	1293686	1293686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			464	40	576	0	ENST00000310581.5:c.1315G>A	p.Glu439Lys	p.E439K	ENST00000310581	NM_198253.2	439	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0058945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			161	77	275	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578227	7578227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	49	476	0	ENST00000269305.4:c.622G>T	p.Asp208Tyr	p.D208Y	ENST00000269305	NM_001126112.2	208	Gac/Tac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921536	178921537	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTGCAACCTACGTGAATGTAAATATTC			P-0058945-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			175	42	283	0	ENST00000263967.3:c.1020_1046dup	p.Ala341_Arg349dup	p.A341_R349dup	ENST00000263967	NM_006218.2	341	tgt/tGTGCAACCTACGTGAATGTAAATATTCgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0058949-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	20	315	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	16	412	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	65	216	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	112	469	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			411	26	386	4	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	64	432	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	36	348	1	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																																																															
MTOR	2475	MSKCC	GRCh37	1	11177103	11177103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1135176		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	22	267	0	ENST00000361445.4:c.6974C>T	p.Ala2325Val	p.A2325V	ENST00000361445	NM_004958.3	2325	gCg/gTg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47656951	47656951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63749849		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	66	205	0	ENST00000233146.2:c.1147C>T	p.Arg383Ter	p.R383*	ENST00000233146	NM_000251.2	383	Cga/Tga																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440912	52440912	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1205668341		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			407	26	457	3	ENST00000460680.1:c.592del	p.Glu198ArgfsTer33	p.E198Rfs*33	ENST00000460680	NM_004656.3	198	Gag/ag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276755	15276755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138265894		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	27	472	0	ENST00000263388.2:c.5510G>A	p.Arg1837His	p.R1837H	ENST00000263388	NM_000435.2	1837	cGt/cAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			137	10	157	1	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	30	513	1	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
TP63	8626	MSKCC	GRCh37	3	189526151	189526151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			512	33	469	0	ENST00000264731.3:c.415G>A	p.Ala139Thr	p.A139T	ENST00000264731	NM_003722.4	139	Gcg/Acg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222993	5222993	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762510209		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			241	61	506	0	ENST00000357368.4:c.2810C>T	p.Ala937Val	p.A937V	ENST00000357368	NM_002850.3	937	gCg/gTg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715979	52715979	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786205227		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	20	449	0	ENST00000322088.6:c.544C>T	p.Arg182Trp	p.R182W	ENST00000322088	NM_014225.5	182	Cgg/Tgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			253	56	341	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ATR	545	MSKCC	GRCh37	3	142261555	142261555	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			238	15	104	0	ENST00000350721.4:c.3402del	p.Phe1134LeufsTer6	p.F1134Lfs*6	ENST00000350721	NM_001184.3	1134	ttT/tt																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			293	84	277	3	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2949715	2949715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			216	73	365	0	ENST00000396946.4:c.3229C>T	p.Arg1077Trp	p.R1077W	ENST00000396946	NM_032415.4	1077	Cgg/Tgg																																																																															
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	61	347	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341141	8341141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1347452833		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	17	252	0	ENST00000356435.5:c.5075G>A	p.Arg1692His	p.R1692H	ENST00000356435		1692	cGt/cAt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	57	460	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71101750	71101751	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			266	61	244	0	ENST00000318789.4:c.447dup	p.Gln150ThrfsTer20	p.Q150Tfs*20	ENST00000318789	NM_032682.5	149	-/A																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991757	72991758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs760959844		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	83	510	0	ENST00000268489.5:c.2287dup	p.Glu763GlyfsTer26	p.E763Gfs*26	ENST00000268489	NM_006885.3	763	gag/gGag																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	26	284	0	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
INHA	3623	MSKCC	GRCh37	2	220437288	220437288	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1476801115		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			297	28	439	0	ENST00000243786.2:c.197del	p.Gly66AlafsTer61	p.G66Afs*61	ENST00000243786	NM_002191.3	64	ctG/ct																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781321	3781321	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200112956		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	37	528	3	ENST00000262367.5:c.5044C>T	p.Arg1682Cys	p.R1682C	ENST00000262367	NM_004380.2	1682	Cgc/Tgc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	57	130	0	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046263	128046263	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1308398082		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	34	390	0	ENST00000285398.2:c.1000C>T	p.Arg334Cys	p.R334C	ENST00000285398	NM_000122.1	334	Cgt/Tgt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354375	354375	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs910854855		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			252	109	359	0	ENST00000262320.3:c.1183C>T	p.Arg395Cys	p.R395C	ENST00000262320	NM_003502.3	395	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			386	33	510	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2096132	2096133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs763525759		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			234	82	338	0	ENST00000219066.1:c.374dup	p.Val127GlyfsTer43	p.V127Gfs*43	ENST00000219066	NM_002528.5	125	cca/ccCa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375142	31375142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs537913125		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			332	115	555	0	ENST00000328111.2:c.539C>T	p.Thr180Met	p.T180M	ENST00000328111	NM_006892.3	180	aCg/aTg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726267	46726267	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371935755		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			344	28	429	0	ENST00000371975.4:c.461G>A	p.Arg154Gln	p.R154Q	ENST00000371975	NM_003579.3	154	cGg/cAg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36941121	36941121	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	105	489	2	ENST00000361632.4:c.218del	p.Gly73AlafsTer31	p.G73Afs*31	ENST00000361632		73	gGc/gc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40498610	40498610	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	16	264	1	ENST00000264657.5:c.250C>T	p.Arg84Ter	p.R84*	ENST00000264657	NM_139276.2	84	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222828	36222828	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			237	111	457	0	ENST00000222270.7:c.5462del	p.Pro1821HisfsTer74	p.P1821Hfs*74	ENST00000222270	NM_014727.1	1819	gaC/ga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212375	36212375	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	20	496	0	ENST00000222270.7:c.2126C>A	p.Pro709His	p.P709H	ENST00000222270	NM_014727.1	709	cCt/cAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68930087	68930087	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			206	12	179	0	ENST00000288368.4:c.148T>G	p.Leu50Val	p.L50V	ENST00000288368	NM_024870.2	50	Tta/Gta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178937422	178937422	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			75	8	43	0	ENST00000263967.3:c.1810T>C	p.Cys604Arg	p.C604R	ENST00000263967	NM_006218.2	604	Tgt/Cgt																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504995	186504995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	81	355	0	ENST00000323963.5:c.851G>A	p.Arg284His	p.R284H	ENST00000323963		284	cGc/cAc																																																																															
KDR	3791	MSKCC	GRCh37	4	55963828	55963828	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			180	15	223	0	ENST00000263923.4:c.2614+1G>A		p.X872_splice	ENST00000263923	NM_002253.2	872																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157522188	157522188	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370838091		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			307	44	503	0	ENST00000346085.5:c.4460C>T	p.Ala1487Val	p.A1487V	ENST00000346085	NM_020732.3	1487	gCg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845958	151845959	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	23	404	0	ENST00000262189.6:c.13053dup	p.Trp4352MetfsTer17	p.W4352Mfs*17	ENST00000262189	NM_170606.2	4351	-/A																																																																															
MSH3	4437	MSKCC	GRCh37	5	80109527	80109527	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766261257		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	83	309	0	ENST00000265081.6:c.2780C>T	p.Ala927Val	p.A927V	ENST00000265081	NM_002439.4	927	gCg/gTg																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182683507	182683507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			151	31	97	0	ENST00000292782.4:c.38G>A	p.Arg13His	p.R13H	ENST00000292782	NM_020640.2	13	cGt/cAt																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656915	45656915	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs558943057		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			375	83	476	0	ENST00000407780.3:c.241C>T	p.Arg81Trp	p.R81W	ENST00000407780	NM_001283052.1	81	Cgg/Tgg																																																																															
EP300	2033	MSKCC	GRCh37	22	41573032	41573032	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238889159		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			373	77	490	0	ENST00000263253.7:c.5317C>T	p.Arg1773Trp	p.R1773W	ENST00000263253	NM_001429.3	1773	Cgg/Tgg																																																																															
ERF	2077	MSKCC	GRCh37	19	42754617	42754619	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			313	23	420	0	ENST00000222329.4:c.121_123del	p.Glu41del	p.E41del	ENST00000222329	NM_006494.2	41	GAG/-																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128419995	128419995	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1238730432		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	18	229	0	ENST00000265960.3:c.433C>T	p.Arg145Cys	p.R145C	ENST00000265960	NM_001006617.1	145	Cgc/Tgc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131926963	131926963	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			189	23	164	0	ENST00000265335.6:c.1504del	p.Met502TrpfsTer3	p.M502Wfs*3	ENST00000265335		500	ttA/tt																																																																															
APC	324	MSKCC	GRCh37	5	112178384	112178384	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	45	257	0	ENST00000257430.4:c.7093T>C	p.Ser2365Pro	p.S2365P	ENST00000257430	NM_000038.5	2365	Tca/Cca																																																																															
APC	324	MSKCC	GRCh37	5	112173686	112173687	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	81	264	0	ENST00000257430.4:c.2396_2397del	p.Tyr799CysfsTer3	p.Y799Cfs*3	ENST00000257430	NM_000038.5	799	TAt/t																																																																															
SDHC	6391	MSKCC	GRCh37	1	161298257	161298257	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769177037		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	46	281	0	ENST00000367975.2:c.149G>A	p.Arg50His	p.R50H	ENST00000367975	NM_003001.3	50	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs749415085		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	9	206	0	ENST00000263967.3:c.112C>A	p.Arg38Ser	p.R38S	ENST00000263967	NM_006218.2	38	Cgt/Agt																																																																															
FH	2271	MSKCC	GRCh37	1	241665819	241665819	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	21	304	0	ENST00000366560.3:c.1160T>C	p.Val387Ala	p.V387A	ENST00000366560	NM_000143.3	387	gTc/gCc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508080	106508080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	15	387	0	ENST00000359195.3:c.74C>T	p.Pro25Leu	p.P25L	ENST00000359195	NM_002649.2	25	cCg/cTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991400	72991400	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201144589		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	37	433	0	ENST00000268489.5:c.2645C>T	p.Ser882Leu	p.S882L	ENST00000268489	NM_006885.3	882	tCg/tTg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379845	17379845	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1175226015		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			268	51	358	0	ENST00000359435.4:c.230C>T	p.Pro77Leu	p.P77L	ENST00000359435	NM_001033549.1	77	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			185	22	210	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101066	27101066	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1330309030		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	66	407	0	ENST00000324856.7:c.4348G>A	p.Gly1450Ser	p.G1450S	ENST00000324856	NM_006015.4	1450	Ggc/Agc																																																																															
STK40	83931	MSKCC	GRCh37	1	36820879	36820881	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			314	103	422	0	ENST00000373129.3:c.496_498del	p.Glu166del	p.E166del	ENST00000373129	NM_032017.1	166	GAG/-																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150923867	150923870	+	frameshift_variant	Frame_Shift_Del	DEL	CTAT	CTAT	-			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			406	24	339	0	ENST00000271640.5:c.2241_2244del	p.Ile748ArgfsTer22	p.I748Rfs*22	ENST00000271640	NM_001145415.1	747	aCTATc/ac																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112769567	112769570	+	frameshift_variant	Frame_Shift_Del	DEL	ACTC	ACTC	-			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			181	56	207	0	ENST00000369452.4:c.1521_1524del	p.His508PhefsTer11	p.H508Ffs*11	ENST00000369452	NM_007373.3	507	ACTCac/ac																																																																															
LMO1	4004	MSKCC	GRCh37	11	8246180	8246180	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	24	320	0	ENST00000335790.3:c.454G>T	p.Glu152Ter	p.E152*	ENST00000335790	NM_002315.2	152	Gaa/Taa																																																																															
SESN3	143686	MSKCC	GRCh37	11	94918590	94918590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	18	281	0	ENST00000536441.1:c.592G>A	p.Ala198Thr	p.A198T	ENST00000536441	NM_144665.3	198	Gca/Aca																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374597	118374597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	82	472	0	ENST00000534358.1:c.7990G>A	p.Ala2664Thr	p.A2664T	ENST00000534358	NM_005933.3	2664	Gct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	106	280	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945049	31945049	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			487	57	490	2	ENST00000340398.3:c.52del	p.Arg18AlafsTer19	p.R18Afs*19	ENST00000340398	NM_001013699.2	18	Cgc/gc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121437166	121437166	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	23	485	0	ENST00000257555.6:c.1597C>A	p.Leu533Met	p.L533M	ENST00000257555		533	Ctg/Atg																																																																															
POLE	5426	MSKCC	GRCh37	12	133210819	133210819	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	21	393	0	ENST00000320574.5:c.5957del	p.Leu1986CysfsTer13	p.L1986Cfs*13	ENST00000320574	NM_006231.2	1986	tTg/tg																																																																															
POLE	5426	MSKCC	GRCh37	12	133225533	133225533	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			217	115	390	1	ENST00000320574.5:c.4131G>T	p.Glu1377Asp	p.E1377D	ENST00000320574	NM_006231.2	1377	gaG/gaT																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562505	21562506	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGGGG			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			126	17	269	0	ENST00000382592.4:c.1413_1414insCCCCCC	p.Pro471_Ala472insProPro	p.P471_A472insPP	ENST00000382592	NM_014572.2	471	-/CCCCCC																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435979	110435979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			423	36	533	0	ENST00000375856.3:c.2422C>T	p.Arg808Cys	p.R808C	ENST00000375856	NM_003749.2	808	Cgc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42058357	42058357	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	18	345	0	ENST00000219905.7:c.8077A>G	p.Asn2693Asp	p.N2693D	ENST00000219905	NM_001164273.1	2693	Aat/Gat																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43714111	43714111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			425	39	400	0	ENST00000382044.4:c.4042G>A	p.Gly1348Arg	p.G1348R	ENST00000382044	NM_001141980.1	1348	Ggg/Agg																																																																															
USP8	9101	MSKCC	GRCh37	15	50773879	50773880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	94	205	0	ENST00000433963.1:c.1427dup	p.Asn476LysfsTer35	p.N476Kfs*35	ENST00000433963	NM_001128611.1	474	gaa/gAaa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2124261	2124261	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs796053473		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	143	415	1	ENST00000219476.3:c.2416G>A	p.Val806Met	p.V806M	ENST00000219476	NM_000548.3	806	Gtg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821872	72821872	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			328	78	442	0	ENST00000268489.5:c.10303C>A	p.Leu3435Met	p.L3435M	ENST00000268489	NM_006885.3	3435	Ctg/Atg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346484	89346484	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145822257		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			254	95	491	1	ENST00000301030.4:c.6466G>A	p.Val2156Met	p.V2156M	ENST00000301030	NM_001256183.1	2156	Gtg/Atg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59770811	59770811	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	15	121	0	ENST00000259008.2:c.2555A>G	p.Asn852Ser	p.N852S	ENST00000259008	NM_032043.2	852	aAc/aGc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554118	63554119	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			302	120	514	0	ENST00000307078.5:c.620_621del	p.Thr207SerfsTer5	p.T207Sfs*5	ENST00000307078	NM_004655.3	207	aCA/a																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78931531	78931531	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			222	71	352	0	ENST00000306801.3:c.3477+1G>T		p.X1159_splice	ENST00000306801	NM_020761.2	1159																																																																																
MLLT1	4298	MSKCC	GRCh37	19	6222401	6222406	+	inframe_deletion	In_Frame_Del	DEL	GGGGTG	GGGGTG	-			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			186	10	272	2	ENST00000252674.7:c.836_841del	p.Pro279_Pro280del	p.P279_P280del	ENST00000252674	NM_005934.3	279	cCACCCCgg/cgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145743	11145743	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199962502		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	93	478	1	ENST00000344626.4:c.4105C>T	p.Arg1369Cys	p.R1369C	ENST00000344626	NM_003072.3	1369	Cgt/Tgt																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47425432	47425432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	100	466	0	ENST00000404338.3:c.3500G>A	p.Arg1167Gln	p.R1167Q	ENST00000404338	NM_004491.4	1167	cGg/cAg																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140171	50140171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			288	99	447	0	ENST00000246792.3:c.254C>T	p.Ala85Val	p.A85V	ENST00000246792	NM_006270.3	85	gCg/gTg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39216444	39216444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	39	128	0	ENST00000402219.2:c.3358G>A	p.Val1120Ile	p.V1120I	ENST00000402219	NM_005633.3	1120	Gtc/Atc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			240	92	374	0	ENST00000260795.2:c.1118A>T	p.Tyr373Phe	p.Y373F	ENST00000260795		373	tAt/tTt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356350	66356350	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			322	47	400	0	ENST00000273854.3:c.1147A>G	p.Thr383Ala	p.T383A	ENST00000273854	NM_004439.5	383	Act/Gct																																																																															
ALB	213	MSKCC	GRCh37	4	74276041	74276041	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267600248		P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	58	266	0	ENST00000295897.4:c.628C>T	p.Arg210Trp	p.R210W	ENST00000295897	NM_000477.5	210	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250898	153250898	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	15	116	0	ENST00000281708.4:c.1162C>T	p.Gln388Ter	p.Q388*	ENST00000281708	NM_033632.3	388	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549887	187549887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	58	175	0	ENST00000441802.2:c.4354C>A	p.His1452Asn	p.H1452N	ENST00000441802	NM_005245.3	1452	Cat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112128153	112128153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	59	143	0	ENST00000257430.4:c.656C>T	p.Ala219Val	p.A219V	ENST00000257430	NM_000038.5	219	gCc/gTc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176673771	176673771	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	23	261	0	ENST00000439151.2:c.4471T>C	p.Ser1491Pro	p.S1491P	ENST00000439151	NM_022455.4	1491	Tcg/Ccg																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250608	26250608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			492	36	613	0	ENST00000446824.2:c.226G>A	p.Ala76Thr	p.A76T	ENST00000446824	NM_021018.2	76	Gcg/Acg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797286	32797286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	49	380	0	ENST00000374899.4:c.1823C>A	p.Ala608Asp	p.A608D	ENST00000374899	NM_018833.2	608	gCt/gAt																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805917	32805918	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	171	457	0	ENST00000374899.4:c.93dup	p.Pro32SerfsTer135	p.P32Sfs*135	ENST00000374899	NM_018833.2	31	-/T																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710621	117710621	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			393	31	419	0	ENST00000368508.3:c.1651T>C	p.Ser551Pro	p.S551P	ENST00000368508	NM_002944.2	551	Tcc/Ccc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878187	151878187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			319	118	439	0	ENST00000262189.6:c.6758C>T	p.Ala2253Val	p.A2253V	ENST00000262189	NM_170606.2	2253	gCa/gTa																																																																															
NBN	4683	MSKCC	GRCh37	8	90983496	90983496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	36	123	0	ENST00000265433.3:c.607C>T	p.Pro203Ser	p.P203S	ENST00000265433	NM_002485.4	203	Cca/Tca																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739097	145739097	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			389	28	455	0	ENST00000428558.2:c.2059-1G>T		p.X687_splice	ENST00000428558	NM_004260.3	687																																																																																
BCOR	54880	MSKCC	GRCh37	X	39932831	39932831	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0058955-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			148	95	266	0	ENST00000378444.4:c.1768A>C	p.Thr590Pro	p.T590P	ENST00000378444	NM_001123385.1	590	Acc/Ccc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149514385	149514385	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	33	382	0	ENST00000261799.4:c.559A>G	p.Ser187Gly	p.S187G	ENST00000261799	NM_002609.3	187	Agc/Ggc																																																																															
POT1	25913	MSKCC	GRCh37	7	124487032	124487032	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058957-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			117	75	179	0	ENST00000357628.3:c.970T>C	p.Tyr324His	p.Y324H	ENST00000357628	NM_015450.2	324	Tac/Cac																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0058972-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	118	421	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2958177	2958177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058972-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	270	399	0	ENST00000396946.4:c.2555G>A	p.Arg852Gln	p.R852Q	ENST00000396946	NM_032415.4	852	cGa/cAa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119752	70119753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0058972-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			223	118	322	0	ENST00000245479.2:c.755dup	p.Lys253GlufsTer43	p.K253Efs*43	ENST00000245479	NM_000346.3	252	ctg/cTtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579303	7579314	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCAACTGACCGT	GCAACTGACCGT	-			P-0058972-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			219	114	340	0	ENST00000269305.4:c.373_375+9del		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
APC	324	MSKCC	GRCh37	5	112173898	112173898	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0058972-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			369	150	466	0	ENST00000257430.4:c.2607del	p.Pro870GlnfsTer46	p.P870Qfs*46	ENST00000257430	NM_000038.5	869	aaT/aa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2963874	2963874	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058972-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	101	415	0	ENST00000396946.4:c.1933C>A	p.Leu645Met	p.L645M	ENST00000396946	NM_032415.4	645	Ctg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0058973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	100	485	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575195	48575195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	33	264	0	ENST00000342988.3:c.389C>T	p.Pro130Leu	p.P130L	ENST00000342988	NM_005359.5	130	cCa/cTa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32184998	32184998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			592	46	461	0	ENST00000375023.3:c.1670G>A	p.Ser557Asn	p.S557N	ENST00000375023	NM_004557.3	557	aGc/aAc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712526	43712526	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767934572		P-0058973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			683	42	476	0	ENST00000382044.4:c.4658C>T	p.Ser1553Leu	p.S1553L	ENST00000382044	NM_001141980.1	1553	tCg/tTg																																																																															
YAP1	10413	MSKCC	GRCh37	11	102094423	102094423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			485	81	389	0	ENST00000282441.5:c.1103C>T	p.Pro368Leu	p.P368L	ENST00000282441	NM_001130145.2	368	cCc/cTc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136354	2136365	+	inframe_deletion	In_Frame_Del	DEL	ACTGCTGGCACG	ACTGCTGGCACG	-			P-0058973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			488	89	533	0	ENST00000219476.3:c.4824_4835del	p.Cys1609_Asp1612del	p.C1609_D1612del	ENST00000219476	NM_000548.3	1608	tACTGCTGGCACGat/tat																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110153	3110153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			341	31	394	0	ENST00000078429.4:c.143G>A	p.Gly48Asp	p.G48D	ENST00000078429	NM_002067.2	48	gGc/gAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133531	55133531	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776121704		P-0058973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			569	42	428	0	ENST00000257290.5:c.835G>A	p.Glu279Lys	p.E279K	ENST00000257290	NM_006206.4	279	Gag/Aag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157454233	157454233	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058973-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	46	462	0	ENST00000346085.5:c.2443T>C	p.Ser815Pro	p.S815P	ENST00000346085	NM_020732.3	815	Tcg/Ccg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0058976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	222	539	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174835	112174835	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0058976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	116	360	0	ENST00000257430.4:c.3544A>T	p.Lys1182Ter	p.K1182*	ENST00000257430	NM_000038.5	1182	Aaa/Taa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38946638	38946638	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	56	223	0	ENST00000357387.3:c.4331A>T	p.Tyr1444Phe	p.Y1444F	ENST00000357387	NM_152756.3	1444	tAt/tTt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177822	56177822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058976-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			419	148	466	0	ENST00000399503.3:c.2795C>T	p.Ala932Val	p.A932V	ENST00000399503	NM_005921.1	932	gCc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047181-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			268	171	337	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MGA	23269	MSKCC	GRCh37	15	42054395	42054396	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047181-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			215	69	298	1	ENST00000219905.7:c.7585dup	p.Arg2529LysfsTer9	p.R2529Kfs*9	ENST00000219905	NM_001164273.1	2527	caa/cAaa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207118	1207118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047181-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			465	534	845	0	ENST00000326873.7:c.206C>A	p.Ser69Ter	p.S69*	ENST00000326873	NM_000455.4	69	tCg/tAg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198274541	198274541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047181-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			563	200	570	0	ENST00000335508.6:c.857C>T	p.Ser286Phe	p.S286F	ENST00000335508	NM_012433.2	286	tCc/tTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259196	89259196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047181-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			286	106	380	0	ENST00000336596.2:c.340G>A	p.Gly114Arg	p.G114R	ENST00000336596	NM_005233.5	114	Gga/Aga																																																																															
STAG2	10735	MSKCC	GRCh37	X	123227925	123227925	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047181-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			250	100	362	0	ENST00000218089.9:c.3636G>C	p.Met1212Ile	p.M1212I	ENST00000218089	NM_001042749.1	1212	atG/atC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0052862-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			233	97	291	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
HRAS	3265	MSKCC	GRCh37	11	534288	534288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894230		P-0052862-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			350	371	600	0	ENST00000311189.7:c.35G>A	p.Gly12Asp	p.G12D	ENST00000311189		12	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577093	7577093	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882008		P-0052862-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	305	651	0	ENST00000269305.4:c.845G>A	p.Arg282Gln	p.R282Q	ENST00000269305	NM_001126112.2	282	cGg/cAg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86627281	86627281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0052862-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			135	102	353	0	ENST00000274376.6:c.656C>G	p.Ser219Ter	p.S219*	ENST00000274376	NM_002890.2	219	tCa/tGa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433896	49433896	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052862-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			739	477	940	0	ENST00000301067.7:c.7657C>T	p.Gln2553Ter	p.Q2553*	ENST00000301067	NM_003482.3	2553	Cag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244235	153244235	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0052862-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			180	137	324	0	ENST00000281708.4:c.1922C>G	p.Ser641Ter	p.S641*	ENST00000281708	NM_033632.3	641	tCa/tGa																																																																															
SUFU	51684	MSKCC	GRCh37	10	104353437	104353437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052862-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			433	323	701	1	ENST00000369902.3:c.642G>A	p.Trp214Ter	p.W214*	ENST00000369902	NM_016169.3	214	tgG/tgA																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84403331	84403331	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776427276		P-0052862-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			150	95	354	0	ENST00000321945.7:c.154G>A	p.Asp52Asn	p.D52N	ENST00000321945	NM_139076.2	52	Gat/Aat																																																																															
RAD50	10111	MSKCC	GRCh37	5	131953950	131953950	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052862-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			67	60	240	0	ENST00000265335.6:c.3353A>G	p.Asn1118Ser	p.N1118S	ENST00000265335		1118	aAc/aGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0055288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	2061	661	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	138	840	0	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc																																																																															
TET2	54790	MSKCC	GRCh37	4	106155899	106155899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767332628		P-0055288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	85	463	0	ENST00000380013.4:c.800C>T	p.Pro267Leu	p.P267L	ENST00000380013	NM_001127208.2	267	cCa/cTa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045551	47045551	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	24	427	0	ENST00000329236.7:c.2285del	p.Gly762AlafsTer7	p.G762Afs*7	ENST00000329236	NM_001204466.1	762	Ggc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0057113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	17	401	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0057859-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			91	45	221	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913285		P-0057859-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			68	38	165	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057705	27057705	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057859-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			614	62	588	0	ENST00000324856.7:c.1413C>A	p.Tyr471Ter	p.Y471*	ENST00000324856	NM_006015.4	471	taC/taA																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021828	71021828	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0057859-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			119	86	316	0	ENST00000318789.4:c.1531-1G>A		p.X511_splice	ENST00000318789	NM_032682.5	511																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118344082	118344086	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAA	GAAAA	-			P-0057859-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			166	145	475	0	ENST00000534358.1:c.2214_2218del	p.Arg738SerfsTer3	p.R738Sfs*3	ENST00000534358	NM_005933.3	736	agGAAAAga/agga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11186679	11186679	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			446	116	407	0	ENST00000361445.4:c.6526G>T	p.Gly2176Cys	p.G2176C	ENST00000361445	NM_004958.3	2176	Ggc/Tgc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306942	65306942	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776082057		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			516	112	470	0	ENST00000342505.4:c.2635C>T	p.Arg879Cys	p.R879C	ENST00000342505	NM_002227.2	879	Cgt/Tgt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458380	120458380	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			753	115	769	0	ENST00000256646.2:c.6965C>A	p.Pro2322His	p.P2322H	ENST00000256646	NM_024408.3	2322	cCc/cAc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838439	156838439	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			696	57	604	0	ENST00000524377.1:c.717G>T	p.Met239Ile	p.M239I	ENST00000524377	NM_002529.3	239	atG/atT																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175957465	175957465	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			404	143	384	1	ENST00000367669.3:c.1931del	p.Asn644ThrfsTer3	p.N644Tfs*3	ENST00000367669	NM_022457.5	644	aAc/ac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			289	18	306	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	100	428	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942053	71942053	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			701	51	580	0	ENST00000298229.2:c.1322del	p.Asn441ThrfsTer2	p.N441Tfs*2	ENST00000298229	NM_001567.3	439	ccA/cc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948208	71948209	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs749079348		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			529	113	546	1	ENST00000298229.2:c.2927dup	p.Pro977ThrfsTer7	p.P977Tfs*7	ENST00000298229	NM_001567.3	974	gcc/gCcc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94211915	94211915	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773766504		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			301	52	378	0	ENST00000323929.3:c.530C>T	p.Ala177Val	p.A177V	ENST00000323929	NM_005591.3	177	gCg/gTg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			488	86	436	1	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			242	66	267	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			707	56	634	5	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			619	87	603	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447773	49447773	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			540	68	455	0	ENST00000301067.7:c.661del	p.Ala221LeufsTer40	p.A221Lfs*40	ENST00000301067	NM_003482.3	221	Gct/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448526	49448526	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371342351		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			614	138	526	0	ENST00000301067.7:c.185C>T	p.Pro62Leu	p.P62L	ENST00000301067	NM_003482.3	62	cCg/cTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911443	32911443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			297	67	460	0	ENST00000380152.3:c.2957del	p.Asn986IlefsTer5	p.N986Ifs*5	ENST00000380152		984	gAa/ga																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609934	81609934	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369995834		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			624	178	662	0	ENST00000298171.2:c.1532C>T	p.Thr511Met	p.T511M	ENST00000298171	NM_000369.2	511	aCg/aTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	107	462	1	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2213932	2213932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			458	144	493	1	ENST00000326181.6:c.11G>A	p.Gly4Asp	p.G4D	ENST00000326181	NM_032271.2	4	gGc/gAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943641	9943641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			659	49	461	0	ENST00000330684.3:c.1300G>A	p.Val434Met	p.V434M	ENST00000330684	NM_001134407.1	434	Gtg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991695	72991695	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1383503121		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			695	170	610	0	ENST00000268489.5:c.2350G>A	p.Ala784Thr	p.A784T	ENST00000268489	NM_006885.3	784	Gcc/Acc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351041	89351042	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			558	122	537	0	ENST00000301030.4:c.1908_1909del	p.His636GlnfsTer26	p.H636Qfs*26	ENST00000301030	NM_001256183.1	636	caCAaa/caaa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15964780	15964780	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1001018811		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			559	60	472	0	ENST00000268712.3:c.5816G>A	p.Arg1939Gln	p.R1939Q	ENST00000268712	NM_006311.3	1939	cGg/cAg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687514	37687514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			626	49	505	0	ENST00000447079.4:c.4422del	p.Pro1475LeufsTer24	p.P1475Lfs*24	ENST00000447079	NM_015083.1	1473	cGg/cg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			747	68	662	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440757	56440757	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774211426		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			596	174	531	0	ENST00000407977.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000407977		154	cCg/cTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			661	134	548	1	ENST00000407977.2:c.349del	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530163	63530163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145007501		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			473	111	418	0	ENST00000307078.5:c.2272G>A	p.Ala758Thr	p.A758T	ENST00000307078	NM_004655.3	758	Gcg/Acg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584514	48584514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			524	74	433	1	ENST00000342988.3:c.692del	p.Gly231AlafsTer10	p.G231Afs*10	ENST00000342988	NM_005359.5	229	ctG/ct																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4101031	4101031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375843855		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			437	120	364	0	ENST00000262948.5:c.691C>T	p.Arg231Cys	p.R231C	ENST00000262948	NM_030662.3	231	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223152	5223152	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745426688		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			524	135	608	0	ENST00000357368.4:c.2651C>T	p.Pro884Leu	p.P884L	ENST00000357368	NM_002850.3	884	cCg/cTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			226	28	164	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5240270	5240271	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			524	99	471	0	ENST00000357368.4:c.1643dup	p.Arg549AlafsTer78	p.R549Afs*78	ENST00000357368	NM_002850.3	548	ccg/ccCg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141426	11141426	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11537676		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			528	116	442	0	ENST00000344626.4:c.3403C>T	p.Arg1135Trp	p.R1135W	ENST00000344626	NM_003072.3	1135	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141541	11141541	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			534	165	474	0	ENST00000344626.4:c.3522del	p.Phe1174LeufsTer42	p.F1174Lfs*42	ENST00000344626	NM_003072.3	1173	aTt/at																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256769	19256769	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			612	127	618	3	ENST00000162023.5:c.944del	p.Pro315GlnfsTer?	p.P315Qfs*?	ENST00000162023		315	cCa/ca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216649	36216649	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764567889		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			602	486	532	0	ENST00000222270.7:c.3815G>A	p.Arg1272His	p.R1272H	ENST00000222270	NM_014727.1	1272	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1097	145	682	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223619	36223619	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769427218		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1030	189	721	0	ENST00000222270.7:c.6169C>T	p.Arg2057Cys	p.R2057C	ENST00000222270	NM_014727.1	2057	Cgc/Tgc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			726	58	525	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046289	128046289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746827111		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			556	232	425	0	ENST00000285398.2:c.974G>A	p.Arg325Gln	p.R325Q	ENST00000285398	NM_000122.1	325	cGa/cAa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			460	206	429	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29445543	29445543	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			624	134	599	0	ENST00000544604.2:c.1374G>T	p.Lys458Asn	p.K458N	ENST00000544604	NM_001206998.1	458	aaG/aaT																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446595	29446595	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1236517906		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			615	83	524	1	ENST00000544604.2:c.2426C>T	p.Thr809Met	p.T809M	ENST00000544604	NM_001206998.1	809	aCg/aTg																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981618	63981618	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368917711		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			635	158	592	0	ENST00000398590.3:c.2120G>A	p.Arg707His	p.R707H	ENST00000398590	NM_001177387.1	707	cGc/cAc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63981832	63981832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			723	41	621	3	ENST00000398590.3:c.2340del	p.Thr781ProfsTer11	p.T781Pfs*11	ENST00000398590	NM_001177387.1	778	ggC/gg																																																																															
ATR	545	MSKCC	GRCh37	3	142281841	142281842	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1172524685		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			466	58	378	0	ENST00000350721.4:c.402dup	p.Lys135Ter	p.K135*	ENST00000350721	NM_001184.3	134	-/T																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			519	135	399	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182683523	182683523	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			270	123	327	0	ENST00000292782.4:c.22C>T	p.Gln8Ter	p.Q8*	ENST00000292782	NM_020640.2	8	Cag/Tag																																																																															
BCL6	604	MSKCC	GRCh37	3	187447721	187447721	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746850741		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			764	124	604	0	ENST00000232014.4:c.472C>T	p.Arg158Trp	p.R158W	ENST00000232014	NM_001130845.1	158	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			700	185	581	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161690	56161690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	48	347	0	ENST00000399503.3:c.1187G>A	p.Arg396His	p.R396H	ENST00000399503	NM_005921.1	396	cGt/cAt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			540	130	473	6	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			390	62	365	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562321	176562321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			449	116	449	0	ENST00000439151.2:c.217C>T	p.Arg73Trp	p.R73W	ENST00000439151	NM_022455.4	73	Cgg/Tgg																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225647	26225647	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746543899		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			808	203	724	0	ENST00000360408.1:c.265G>A	p.Ala89Thr	p.A89T	ENST00000360408	NM_003532.2	89	Gcg/Acg																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519224	137519224	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55924399		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			409	100	420	0	ENST00000367739.4:c.1414G>A	p.Gly472Ser	p.G472S	ENST00000367739	NM_000416.2	472	Ggt/Agt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099718	157099718	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			271	64	299	0	ENST00000346085.5:c.659del	p.Gly220AlafsTer46	p.G220Afs*46	ENST00000346085	NM_020732.3	219	Ggg/gg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528064	157528065	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			612	143	572	0	ENST00000346085.5:c.5791_5792del	p.Leu1931ValfsTer12	p.L1931Vfs*12	ENST00000346085	NM_020732.3	1930	cCT/c																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946171	13946171	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			430	104	419	0	ENST00000405192.2:c.925C>T	p.Arg309Ter	p.R309*	ENST00000405192	NM_001163147.1	309	Cga/Tga																																																																															
EZH2	2146	MSKCC	GRCh37	7	148513822	148513822	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201135441		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			490	49	394	0	ENST00000320356.2:c.1459G>A	p.Ala487Thr	p.A487T	ENST00000320356	NM_004456.4	487	Gct/Act																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151848622	151848622	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376118166		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			400	101	418	0	ENST00000262189.6:c.12571G>A	p.Ala4191Thr	p.A4191T	ENST00000262189	NM_170606.2	4191	Gca/Aca																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			692	46	678	3	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70982013	70982013	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1262764228		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			541	148	507	0	ENST00000276594.2:c.83C>T	p.Ala28Val	p.A28V	ENST00000276594	NM_024504.3	28	gCg/gTg																																																																															
MYC	4609	MSKCC	GRCh37	8	128753073	128753073	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			568	132	494	1	ENST00000377970.2:c.1239del	p.Ala414ProfsTer29	p.A414Pfs*29	ENST00000377970	NM_002467.4	412	Aaa/aa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737320	145737320	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			557	74	583	0	ENST00000428558.2:c.3367C>T	p.Gln1123Ter	p.Q1123*	ENST00000428558	NM_004260.3	1123	Cag/Tag																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2081995	2081995	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			418	65	393	0	ENST00000382203.1:c.2348C>T	p.Ser783Leu	p.S783L	ENST00000382203		783	tCg/tTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913389		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			440	120	585	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399420	139399420	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			615	141	541	1	ENST00000277541.6:c.4723G>C	p.Val1575Leu	p.V1575L	ENST00000277541	NM_017617.3	1575	Gtg/Ctg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006896	47006896	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			418	121	445	0	ENST00000329236.7:c.16C>T	p.Arg6Cys	p.R6C	ENST00000329236	NM_001204466.1	6	Cgt/Tgt																																																																															
BTK	695	MSKCC	GRCh37	X	100617582	100617582	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs782454588		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			490	103	441	0	ENST00000308731.7:c.487A>G	p.Met163Val	p.M163V	ENST00000308731	NM_000061.2	163	Atg/Gtg																																																																															
PHF6	84295	MSKCC	GRCh37	X	133549141	133549141	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			227	29	270	0	ENST00000332070.3:c.829del	p.Arg277GlufsTer2	p.R277Efs*2	ENST00000332070	NM_032458.2	275	ggA/gg																																																																															
SMARCA2	6595	MSKCC	GRCh37	9	2039796	2039796	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs184126259		P-0058060-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			693	141	623	15	ENST00000382203.1:c.686A>C	p.Gln229Pro	p.Q229P	ENST00000382203		229	cAg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540652		P-0058065-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			368	346	412	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058065-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			512	400	548	0	ENST00000304494.5:c.322G>C	p.Asp108His	p.D108H	ENST00000304494	NM_000077.4	108	Gat/Cat																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87482281	87482281	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058065-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			609	98	470	0	ENST00000277120.3:c.1568A>C	p.Lys523Thr	p.K523T	ENST00000277120		523	aAg/aCg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467383	66467383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058065-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			539	193	423	0	ENST00000273854.3:c.886G>A	p.Glu296Lys	p.E296K	ENST00000273854	NM_004439.5	296	Gaa/Aaa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11288850	11288850	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058065-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			794	176	472	0	ENST00000361445.4:c.2905A>T	p.Thr969Ser	p.T969S	ENST00000361445	NM_004958.3	969	Acc/Tcc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500425	99500425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058065-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			436	397	568	0	ENST00000268035.6:c.3858G>T	p.Lys1286Asn	p.K1286N	ENST00000268035	NM_000875.3	1286	aaG/aaT																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639608	3639608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058065-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			686	237	655	0	ENST00000294008.3:c.4031C>T	p.Ser1344Phe	p.S1344F	ENST00000294008	NM_032444.2	1344	tCc/tTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29576001	29576001	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs1060500370		P-0058065-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			228	202	299	0	ENST00000358273.4:c.3975-1G>T		p.X1325_splice	ENST00000358273	NM_001042492.2	1325																																																																																
ATR	545	MSKCC	GRCh37	3	142274903	142274903	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058065-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			335	54	388	0	ENST00000350721.4:c.2157C>A	p.His719Gln	p.H719Q	ENST00000350721	NM_001184.3	719	caC/caA																																																																															
TRIP13	9319	MSKCC	GRCh37	5	917217	917217	+	stop_lost	Nonstop_Mutation	SNP	G	G	T			P-0058065-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			732	292	431	0	ENST00000166345.3:c.1298G>T	p.Ter433LeuextTer38	p.*433Lext*38	ENST00000166345	NM_004237.3	433	tGa/tTa																																																																															
TERT	7015	MSKCC	GRCh37	5	1282556	1282556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058065-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			914	124	472	0	ENST00000310581.5:c.1757G>A	p.Ser586Asn	p.S586N	ENST00000310581	NM_198253.2	586	aGc/aAc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149495430	149495430	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058065-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			490	402	612	0	ENST00000261799.4:c.3217del	p.Glu1073SerfsTer59	p.E1073Sfs*59	ENST00000261799	NM_002609.3	1073	Gag/ag																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519568	137519568	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058065-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			522	327	415	0	ENST00000367739.4:c.1070C>G	p.Thr357Ser	p.T357S	ENST00000367739	NM_000416.2	357	aCt/aGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240702	55240702	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058065-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1198	69	538	0	ENST00000275493.2:c.1946G>T	p.Gly649Val	p.G649V	ENST00000275493	NM_005228.3	649	gGg/gTg																																																																															
POT1	25913	MSKCC	GRCh37	7	124499156	124499156	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058065-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			189	43	307	0	ENST00000357628.3:c.557G>T	p.Gly186Val	p.G186V	ENST00000357628	NM_015450.2	186	gGc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0058303-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			375	126	427	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057520007		P-0058303-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			299	353	540	0	ENST00000269305.4:c.614A>T	p.Tyr205Phe	p.Y205F	ENST00000269305	NM_001126112.2	205	tAt/tTt																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30253762	30253762	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058303-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			366	133	433	0	ENST00000307677.4:c.692G>T	p.Ser231Ile	p.S231I	ENST00000307677	NM_138578.1	231	aGt/aTt																																																																															
TERT	7015	MSKCC	GRCh37	5	1280292	1280292	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201927653		P-0058303-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1058	145	518	0	ENST00000310581.5:c.1931C>T	p.Thr644Met	p.T644M	ENST00000310581	NM_198253.2	644	aCg/aTg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332868	152332868	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058303-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			80	214	416	0	ENST00000206249.3:c.1174G>T	p.Val392Phe	p.V392F	ENST00000206249	NM_000125.3	392	Gtc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0058303-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			834	673	280	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925688	114925688	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058303-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			218	143	442	0	ENST00000543371.1:c.1766C>G	p.Thr589Ser	p.T589S	ENST00000543371	NM_001198531.1	589	aCc/aGc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625190	69625191	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0058303-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			366	230	503	0	ENST00000334134.2:c.602_603delinsAG	p.Pro201Gln	p.P201Q	ENST00000334134	NM_005247.2	201	cCC/cAG																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346024	73346024	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058303-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			52	222	289	0	ENST00000377767.4:c.1514A>T	p.His505Leu	p.H505L	ENST00000377767	NM_014953.3	505	cAt/cTt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046556	30046556	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs774699925		P-0058303-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			360	597	412	0	ENST00000331968.5:c.2627A>T	p.Gln876Leu	p.Q876L	ENST00000331968	NM_002742.2	876	cAg/cTg																																																																															
ERG	2078	MSKCC	GRCh37	21	39755666	39755666	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058303-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			88	293	462	0	ENST00000288319.7:c.1099C>A	p.Arg367Ser	p.R367S	ENST00000288319	NM_182918.3	367	Cgc/Agc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5070016	5070016	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058303-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			140	102	266	0	ENST00000381652.3:c.1605G>T	p.Met535Ile	p.M535I	ENST00000381652	NM_004972.3	535	atG/atT																																																																															
MED12	9968	MSKCC	GRCh37	X	70349224	70349224	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058416-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			612	65	466	0	ENST00000374080.3:c.3636G>T	p.Gln1212His	p.Q1212H	ENST00000374080		1212	caG/caT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445865	49445865	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs946192879		P-0058416-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			814	74	587	0	ENST00000301067.7:c.1601C>T	p.Thr534Met	p.T534M	ENST00000301067	NM_003482.3	534	aCg/aTg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23614839	23614839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058416-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			532	43	386	0	ENST00000261584.4:c.3502G>A	p.Asp1168Asn	p.D1168N	ENST00000261584	NM_024675.3	1168	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578199	7578200	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAC			P-0058416-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			539	117	461	0	ENST00000269305.4:c.646_649dup	p.Val217GlyfsTer6	p.V217Gfs*6	ENST00000269305	NM_001126112.2	217	gtg/gGTGGtg																																																																															
CASP8	841	MSKCC	GRCh37	2	202151270	202151270	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058416-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	104	413	0	ENST00000358485.4:c.1570C>G	p.Gln524Glu	p.Q524E	ENST00000358485	NM_001080125.1	524	Cag/Gag																																																																															
TET2	54790	MSKCC	GRCh37	4	106193924	106193924	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058416-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			455	106	409	0	ENST00000380013.4:c.4386G>C	p.Lys1462Asn	p.K1462N	ENST00000380013	NM_001127208.2	1462	aaG/aaC																																																																															
ATRX	546	MSKCC	GRCh37	X	76937993	76937993	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058416-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			528	42	412	0	ENST00000373344.5:c.2755G>T	p.Asp919Tyr	p.D919Y	ENST00000373344	NM_000489.3	919	Gat/Tat																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589761	69589761	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058614-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			618	37	828	0	ENST00000168712.1:c.92del	p.Ala31AspfsTer96	p.A31Dfs*96	ENST00000168712	NM_002007.2	31	gCa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0058614-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			352	55	300	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21348891	21348891	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058614-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			536	41	598	0	ENST00000215739.8:c.1660G>C	p.Ala554Pro	p.A554P	ENST00000215739	NM_006767.3	554	Gca/Cca																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729528	41729528	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058614-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			629	40	515	0	ENST00000242208.4:c.1001G>C	p.Gly334Ala	p.G334A	ENST00000242208	NM_002192.2	334	gGc/gCc																																																																															
BRAF	673	MSKCC	GRCh37	7	140482820	140482820	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0058614-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			612	99	482	0	ENST00000288602.6:c.1314+1G>T		p.X438_splice	ENST00000288602	NM_004333.4	438																																																																																
RBM10	8241	MSKCC	GRCh37	X	47034444	47034444	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058614-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			419	29	414	0	ENST00000329236.7:c.298G>T	p.Glu100Ter	p.E100*	ENST00000329236	NM_001204466.1	100	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			107	27	174	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			279	22	360	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			297	58	478	4	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			352	58	544	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256768	19256769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1202792889		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			284	30	432	0	ENST00000162023.5:c.944dup	p.Val316SerfsTer6	p.V316Sfs*6	ENST00000162023		315	cca/ccCa																																																																															
APC	324	MSKCC	GRCh37	5	112174490	112174493	+	frameshift_variant	Frame_Shift_Del	DEL	CAAT	CAAT	-	rs1267727476		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			220	46	301	0	ENST00000257430.4:c.3202_3205del	p.Ser1068GlyfsTer57	p.S1068Gfs*57	ENST00000257430	NM_000038.5	1067	CAATca/ca																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851693	134851693	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1042789		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			204	52	413	0	ENST00000398015.3:c.1099C>T	p.Arg367Cys	p.R367C	ENST00000398015	NM_004441.4	367	Cgc/Tgc																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154242	2154242	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1388678905		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	48	600	2	ENST00000434045.2:c.686del	p.Pro229GlnfsTer27	p.P229Qfs*27	ENST00000434045	NM_001127598.1	229	cCa/ca																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911535	101911535	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113605875		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			242	35	313	0	ENST00000374994.4:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000374994	NM_004612.2	487	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			355	75	512	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																															
CASP8	841	MSKCC	GRCh37	2	202141632	202141632	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764461240		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			300	55	367	0	ENST00000358485.4:c.920G>A	p.Arg307Gln	p.R307Q	ENST00000358485	NM_001080125.1	307	cGg/cAg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270530	98270530	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1057518664		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			137	34	306	1	ENST00000331920.6:c.114del	p.Leu39CysfsTer41	p.L39Cfs*41	ENST00000331920	NM_000264.3	38	ggG/gg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637690	52637690	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1239654517		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			145	45	217	0	ENST00000394830.3:c.2626C>T	p.Arg876Cys	p.R876C	ENST00000394830	NM_018313.4	876	Cgt/Tgt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169116	32169116	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1263727065		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			254	58	483	3	ENST00000375023.3:c.3917del	p.Pro1306GlnfsTer3	p.P1306Qfs*3	ENST00000375023	NM_004557.3	1306	cCa/ca																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157510806	157510806	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			263	47	379	0	ENST00000346085.5:c.3586del	p.Gln1196SerfsTer15	p.Q1196Sfs*15	ENST00000346085	NM_020732.3	1194	aCc/ac																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2492096	2492097	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs772088410		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			230	40	391	0	ENST00000355716.4:c.500dup	p.Thr169AspfsTer65	p.T169Dfs*65	ENST00000355716	NM_003820.2	165	tgc/tgCc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			224	46	426	1	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416952	416953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs771545848		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	61	437	5	ENST00000399788.2:c.3597dup	p.Gly1200ArgfsTer7	p.G1200Rfs*7	ENST00000399788	NM_001042603.1	1199	-/A																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911288	29911288	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			285	39	477	1	ENST00000376809.5:c.587T>C	p.Leu196Pro	p.L196P	ENST00000376809	NM_002116.7	196	cTg/cCg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			162	52	196	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			367	69	520	1	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			348	52	608	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627217	37627217	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370304179		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			276	66	338	0	ENST00000447079.4:c.1132C>T	p.Arg378Cys	p.R378C	ENST00000447079	NM_015083.1	378	Cgc/Tgc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032574	12032574	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			243	42	339	0	ENST00000353533.5:c.1013del	p.Pro338ArgfsTer25	p.P338Rfs*25	ENST00000353533	NM_003010.3	337	tCc/tc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857958	9857958	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs140536516		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			290	46	458	0	ENST00000330684.3:c.3443C>A	p.Pro1148Gln	p.P1148Q	ENST00000330684	NM_001134407.1	1148	cCg/cAg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38947452	38947452	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1406752443		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			291	31	412	0	ENST00000357387.3:c.4228C>T	p.Arg1410Trp	p.R1410W	ENST00000357387	NM_152756.3	1410	Cgg/Tgg																																																																															
MGA	23269	MSKCC	GRCh37	15	42005482	42005482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			345	72	519	0	ENST00000219905.7:c.3218G>A	p.Arg1073Gln	p.R1073Q	ENST00000219905	NM_001164273.1	1073	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			156	32	221	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984407	201984407	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			190	140	393	0	ENST00000359651.3:c.1072T>C	p.Ser358Pro	p.S358P	ENST00000359651		358	Tca/Cca																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710625	114710626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			261	61	365	0	ENST00000543371.1:c.115_116dup	p.Asp40GlyfsTer3	p.D40Gfs*3	ENST00000543371	NM_001198531.1	37	gca/gcAGa																																																																															
ATM	472	MSKCC	GRCh37	11	108178656	108178656	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			207	41	268	0	ENST00000278616.4:c.5712del	p.Lys1904AsnfsTer13	p.K1904Nfs*13	ENST00000278616	NM_000051.3	1903	Aaa/aa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434467	110434467	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772356858		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			242	44	405	0	ENST00000375856.3:c.3934G>A	p.Gly1312Ser	p.G1312S	ENST00000375856	NM_003749.2	1312	Ggt/Agt																																																																															
MGA	23269	MSKCC	GRCh37	15	41961510	41961510	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs189815293		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			251	38	362	0	ENST00000219905.7:c.418C>T	p.Arg140Cys	p.R140C	ENST00000219905	NM_001164273.1	140	Cgt/Tgt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88669522	88669522	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs568926009		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			207	33	269	0	ENST00000360948.2:c.1376G>A	p.Arg459Gln	p.R459Q	ENST00000360948	NM_001012338.2	459	cGg/cAg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467842	99467842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			280	43	451	0	ENST00000268035.6:c.2711G>A	p.Arg904Gln	p.R904Q	ENST00000268035	NM_000875.3	904	cGg/cAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830199	72830199	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	45	502	0	ENST00000268489.5:c.6382C>A	p.Leu2128Met	p.L2128M	ENST00000268489	NM_006885.3	2128	Ctg/Atg																																																																															
NF1	4763	MSKCC	GRCh37	17	29559168	29559168	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			180	35	218	0	ENST00000358273.4:c.3275G>C	p.Gly1092Ala	p.G1092A	ENST00000358273	NM_001042492.2	1092	gGt/gCt																																																																															
NF1	4763	MSKCC	GRCh37	17	29686010	29686010	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757391670		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			178	33	235	0	ENST00000358273.4:c.8137C>T	p.Arg2713Trp	p.R2713W	ENST00000358273	NM_001042492.2	2713	Cgg/Tgg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226796	2226796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			289	62	522	0	ENST00000398665.3:c.4276C>A	p.Leu1426Ile	p.L1426I	ENST00000398665	NM_032482.2	1426	Ctc/Atc																																																																															
INSR	3643	MSKCC	GRCh37	19	7128929	7128929	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			249	48	338	0	ENST00000302850.5:c.2879G>C	p.Gly960Ala	p.G960A	ENST00000302850	NM_000208.2	960	gGc/gCc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132512	11132512	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			359	13	485	0	ENST00000344626.4:c.2728A>T	p.Thr910Ser	p.T910S	ENST00000344626	NM_003072.3	910	Acg/Tcg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350002	15350002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			252	64	438	0	ENST00000263377.2:c.3650C>T	p.Ala1217Val	p.A1217V	ENST00000263377	NM_058243.2	1217	gCc/gTc																																																																															
AXL	558	MSKCC	GRCh37	19	41754461	41754461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			250	63	426	0	ENST00000301178.4:c.1580G>A	p.Arg527Gln	p.R527Q	ENST00000301178	NM_021913.4	527	cGg/cAg																																																																															
CD79A	973	MSKCC	GRCh37	19	42383633	42383633	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			234	45	396	0	ENST00000221972.3:c.412del	p.Glu138ArgfsTer54	p.E138Rfs*54	ENST00000221972	NM_021601.3	136	atG/at																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082451	16082451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			207	54	413	0	ENST00000281043.3:c.265G>A	p.Gly89Ser	p.G89S	ENST00000281043	NM_005378.4	89	Ggc/Agc																																																																															
ALK	238	MSKCC	GRCh37	2	30142865	30142865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			262	49	453	0	ENST00000389048.3:c.661G>A	p.Gly221Arg	p.G221R	ENST00000389048	NM_004304.4	221	Ggg/Agg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637505	47637506	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			240	49	357	0	ENST00000233146.2:c.641_642del	p.Arg214ThrfsTer17	p.R214Tfs*17	ENST00000233146	NM_000251.2	213	ctGAga/ctga																																																																															
EP300	2033	MSKCC	GRCh37	22	41513494	41513494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			304	46	470	0	ENST00000263253.7:c.398C>T	p.Ser133Phe	p.S133F	ENST00000263253	NM_001429.3	133	tCt/tTt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430430	181430431	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			255	49	522	0	ENST00000325404.1:c.284dup	p.Arg96AlafsTer14	p.R96Afs*14	ENST00000325404	NM_003106.3	94	-/A																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032176	26032176	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			374	81	598	3	ENST00000244661.2:c.113del	p.Lys38SerfsTer25	p.K38Sfs*25	ENST00000244661	NM_003537.3	38	aAg/ag																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911281	29911282	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			276	37	446	0	ENST00000376809.5:c.581_582del	p.Arg194IlefsTer26	p.R194Ifs*26	ENST00000376809	NM_002116.7	194	AGa/a																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911318	29911318	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs199474584		P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			405	29	669	2	ENST00000376809.5:c.617C>T	p.Thr206Met	p.T206M	ENST00000376809	NM_002116.7	206	aCg/aTg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967236	93967236	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058616-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			118	18	203	0	ENST00000369303.4:c.2116C>G	p.Pro706Ala	p.P706A	ENST00000369303	NM_004440.3	706	Cca/Gca																																																																															
CBFB	865	MSKCC	GRCh37	16	67063630	67063631	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0058717-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			119	55	442	0	ENST00000412916.2:c.81dup	p.Lys28Ter	p.K28*	ENST00000412916		27	att/aTtt																																																																															
CDH1	999	MSKCC	GRCh37	16	68844173	68844178	+	frameshift_variant	Frame_Shift_Del	DEL	ATCAGA	ATCAGA	C			P-0058717-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			136	66	445	0	ENST00000261769.5:c.761_766delinsC	p.Asp254AlafsTer2	p.D254Afs*2	ENST00000261769	NM_004360.3	254	gATCAGAat/gCat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0058719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			79	465	387	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508080	106508080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058719-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			367	142	384	0	ENST00000359195.3:c.74C>T	p.Pro25Leu	p.P25L	ENST00000359195	NM_002649.2	25	cCg/cTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0058766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	54	203	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0058766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			263	162	350	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0058766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	129	338	0	ENST00000257430.4:c.4037C>G	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tGa																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0058766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	36	261	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274043	10274043	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1236030143		P-0058766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	154	443	0	ENST00000330684.3:c.226C>T	p.Arg76Cys	p.R76C	ENST00000330684	NM_001134407.1	76	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112174677	112174678	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0058766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	61	379	0	ENST00000257430.4:c.3389_3390del	p.Cys1130SerfsTer4	p.C1130Sfs*4	ENST00000257430	NM_000038.5	1129	tTG/t																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661369	227661369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	31	486	0	ENST00000305123.5:c.2086G>A	p.Gly696Arg	p.G696R	ENST00000305123	NM_005544.2	696	Gga/Aga																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374739	149374739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058766-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	72	356	0	ENST00000360632.3:c.355G>A	p.Asp119Asn	p.D119N	ENST00000360632	NM_015472.4	119	Gac/Aac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044550	47044550	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	97	227	0	ENST00000329236.7:c.1813G>T	p.Glu605Ter	p.E605*	ENST00000329236	NM_001204466.1	605	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	172	377	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112174388	112174388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			330	68	388	0	ENST00000257430.4:c.3097G>A	p.Asp1033Asn	p.D1033N	ENST00000257430	NM_000038.5	1033	Gat/Aat																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156841431	156841431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			480	67	502	0	ENST00000524377.1:c.734C>A	p.Pro245Gln	p.P245Q	ENST00000524377	NM_002529.3	245	cCa/cAa																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128044340	128044340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	107	427	0	ENST00000285398.2:c.1281G>T	p.Met427Ile	p.M427I	ENST00000285398	NM_000122.1	427	atG/atT																																																																															
APC	324	MSKCC	GRCh37	5	112176467	112176467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			367	91	389	0	ENST00000257430.4:c.5176G>A	p.Glu1726Lys	p.E1726K	ENST00000257430	NM_000038.5	1726	Gaa/Aaa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953016	2953016	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764229454		P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			765	91	416	0	ENST00000396946.4:c.2924G>A	p.Arg975Gln	p.R975Q	ENST00000396946	NM_032415.4	975	cGg/cAg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781116	135781116	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			503	95	477	0	ENST00000298552.3:c.1849del	p.His617IlefsTer12	p.H617Ifs*12	ENST00000298552	NM_001162426.1	617	Cat/at																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440961	56440961	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	153	487	0	ENST00000407977.2:c.376G>C	p.Ala126Pro	p.A126P	ENST00000407977		126	Gct/Cct																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726689	46726689	+	splice_donor_variant	Splice_Site	SNP	T	T	C	rs1170180432		P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	73	396	0	ENST00000371975.4:c.766+2T>C		p.X256_splice	ENST00000371975	NM_003579.3	256																																																																																
CSDE1	7812	MSKCC	GRCh37	1	115266594	115266594	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	75	320	0	ENST00000438362.2:c.1921A>C	p.Thr641Pro	p.T641P	ENST00000438362	NM_001242891.1	641	Acc/Ccc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120491062	120491062	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	88	447	0	ENST00000256646.2:c.2727G>T	p.Glu909Asp	p.E909D	ENST00000256646	NM_024408.3	909	gaG/gaT																																																																															
PARP1	142	MSKCC	GRCh37	1	226568812	226568812	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	414	433	1	ENST00000366794.5:c.1257G>T	p.Leu419Phe	p.L419F	ENST00000366794	NM_001618.3	419	ttG/ttT																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851523	63851523	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			602	95	446	0	ENST00000279873.7:c.2301G>T	p.Lys767Asn	p.K767N	ENST00000279873	NM_032199.2	767	aaG/aaT																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154428	2154428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			588	96	483	0	ENST00000434045.2:c.500G>A	p.Gly167Asp	p.G167D	ENST00000434045	NM_001127598.1	167	gGc/gAc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456791	32456791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	150	413	0	ENST00000332351.3:c.101G>T	p.Arg34Leu	p.R34L	ENST00000332351	NM_024426.4	34	cGg/cTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18691094	18691095	+	missense_variant	Missense_Mutation	DNP	CG	CG	GA			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	241	371	0	ENST00000266497.5:c.3205_3206delinsGA	p.Arg1069Glu	p.R1069E	ENST00000266497		1069	CGa/GAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25362814	25362814	+	3_prime_UTR_variant	3'UTR	SNP	C	C	T			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	36	321	0	ENST00000256078.4:c.*36G>A			ENST00000256078	NM_033360.2																																																																																	
ARID2	196528	MSKCC	GRCh37	12	46231319	46231319	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	124	371	0	ENST00000334344.6:c.1159A>T	p.Asn387Tyr	p.N387Y	ENST00000334344	NM_152641.2	387	Aat/Tat																																																																															
MGA	23269	MSKCC	GRCh37	15	42042391	42042391	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	104	545	0	ENST00000219905.7:c.6586G>T	p.Glu2196Ter	p.E2196*	ENST00000219905	NM_001164273.1	2196	Gag/Tag																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66774125	66774125	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			524	83	492	0	ENST00000307102.5:c.601C>A	p.Arg201Ser	p.R201S	ENST00000307102	NM_002755.3	201	Cgt/Agt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679171	88679171	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs890457420		P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	63	419	0	ENST00000360948.2:c.866T>C	p.Val289Ala	p.V289A	ENST00000360948	NM_001012338.2	289	gTg/gCg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222473	2222473	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1275009442		P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			603	118	514	0	ENST00000326181.6:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326181	NM_032271.2	223	Gag/Tag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645871	67645871	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			456	132	327	0	ENST00000264010.4:c.799C>T	p.Gln267Ter	p.Q267*	ENST00000264010	NM_006565.3	267	Cag/Tag																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33679977	33679977	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			621	78	392	0	ENST00000394566.1:c.2104C>G	p.Leu702Val	p.L702V	ENST00000394566	NM_001104587.1	702	Ctg/Gtg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096901	11096901	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			564	80	493	0	ENST00000344626.4:c.392C>G	p.Ser131Cys	p.S131C	ENST00000344626	NM_003072.3	131	tCt/tGt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272198	15272198	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	160	507	0	ENST00000263388.2:c.6241G>C	p.Gly2081Arg	p.G2081R	ENST00000263388	NM_000435.2	2081	Ggc/Cgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227668	36227668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			707	221	512	0	ENST00000222270.7:c.7237C>T	p.His2413Tyr	p.H2413Y	ENST00000222270	NM_014727.1	2413	Cat/Tat																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967173	25967173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	213	461	0	ENST00000435504.4:c.2033C>T	p.Ala678Val	p.A678V	ENST00000435504		678	gCc/gTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40979302	40979302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	165	429	0	ENST00000373198.4:c.1831C>A	p.Leu611Met	p.L611M	ENST00000373198	NM_133170.3	611	Ctg/Atg																																																																															
LZTR1	8216	MSKCC	GRCh37	22	21340185	21340185	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	72	351	0	ENST00000215739.8:c.319A>T	p.Arg107Trp	p.R107W	ENST00000215739	NM_006767.3	107	Agg/Tgg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138478140	138478140	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			579	82	382	0	ENST00000289153.2:c.46G>C	p.Asp16His	p.D16H	ENST00000289153	NM_006219.2	16	Gac/Cac																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748093	41748093	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			280	40	275	0	ENST00000226382.2:c.676del	p.Ala226ArgfsTer83	p.A226Rfs*83	ENST00000226382	NM_003924.3	226	Gcg/cg																																																																															
REST	5978	MSKCC	GRCh37	4	57797416	57797416	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763356980		P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			589	211	613	0	ENST00000309042.7:c.2392C>T	p.Pro798Ser	p.P798S	ENST00000309042	NM_005612.4	798	Cct/Tct																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874568	35874568	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			394	74	396	0	ENST00000303115.3:c.724T>A	p.Leu242Ile	p.L242I	ENST00000303115	NM_002185.3	242	Tta/Ata																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497350	149497350	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			368	95	411	0	ENST00000261799.4:c.2968G>T	p.Ala990Ser	p.A990S	ENST00000261799	NM_002609.3	990	Gcc/Tcc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048893	180048893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	89	421	0	ENST00000261937.6:c.1669G>T	p.Gly557Cys	p.G557C	ENST00000261937	NM_182925.4	557	Ggc/Tgc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058756	180058756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	81	504	0	ENST00000261937.6:c.81G>A	p.Met27Ile	p.M27I	ENST00000261937	NM_182925.4	27	atG/atA																																																																															
PARK2	5071	MSKCC	GRCh37	6	161807906	161807906	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			342	78	376	0	ENST00000366898.1:c.1087G>T	p.Ala363Ser	p.A363S	ENST00000366898	NM_004562.2	363	Gcc/Tcc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5072493	5072493	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			231	70	300	0	ENST00000381652.3:c.1643A>G	p.Asn548Ser	p.N548S	ENST00000381652	NM_004972.3	548	aAt/aGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486160	8486160	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	81	414	0	ENST00000356435.5:c.2657A>C	p.His886Pro	p.H886P	ENST00000356435		886	cAc/cCc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882100	36882100	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	141	400	0	ENST00000358127.4:c.913C>A	p.Arg305Ser	p.R305S	ENST00000358127	NM_001280556.1	305	Cgt/Agt																																																																															
BTK	695	MSKCC	GRCh37	X	100609646	100609646	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058847-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			169	77	207	0	ENST00000308731.7:c.1603G>C	p.Val535Leu	p.V535L	ENST00000308731	NM_000061.2	535	Gtt/Ctt																																																																															
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs864622007		P-0058856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			400	46	209	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			114	284	324	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739325	46739337	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGTGACCCGAA	GCGGTGACCCGAA	-			P-0058856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	107	353	0	ENST00000371975.4:c.1518_1530del	p.Thr508AlafsTer5	p.T508Afs*5	ENST00000371975	NM_003579.3	506	GCGGTGACCCGAAgc/gc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745960	162745960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			317	20	421	0	ENST00000367921.3:c.2083G>A	p.Ala695Thr	p.A695T	ENST00000367921	NM_006182.2	695	Gcc/Acc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16024567	16024567	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0058856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			515	37	348	0	ENST00000268712.3:c.1651A>T	p.Lys551Ter	p.K551*	ENST00000268712	NM_006311.3	551	Aag/Tag																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47424805	47424805	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			689	124	447	0	ENST00000404338.3:c.2873C>G	p.Ala958Gly	p.A958G	ENST00000404338	NM_004491.4	958	gCc/gGc																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116225	209116225	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0058856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	95	308	0	ENST00000345146.2:c.51A>C	p.Glu17Asp	p.E17D	ENST00000345146	NM_005896.2	17	gaA/gaC																																																																															
PPARG	5468	MSKCC	GRCh37	3	12421364	12421364	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	96	397	0	ENST00000287820.6:c.244C>G	p.Pro82Ala	p.P82A	ENST00000287820	NM_015869.4	82	Cca/Gca																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164354	47164354	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			267	32	260	0	ENST00000409792.3:c.1772A>G	p.Gln591Arg	p.Q591R	ENST00000409792	NM_014159.6	591	cAg/cGg																																																																															
KDR	3791	MSKCC	GRCh37	4	55979618	55979618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			248	146	269	0	ENST00000263923.4:c.829C>A	p.Leu277Ile	p.L277I	ENST00000263923	NM_002253.2	277	Cta/Ata																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149504341	149504341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			299	179	393	0	ENST00000261799.4:c.1861G>A	p.Gly621Ser	p.G621S	ENST00000261799	NM_002609.3	621	Ggc/Agc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162394428	162394428	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058856-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			232	81	369	0	ENST00000366898.1:c.640del	p.Ala214HisfsTer11	p.A214Hfs*11	ENST00000366898	NM_004562.2	214	Gca/ca																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115284285	115284285	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0058867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			349	80	280	0	ENST00000438362.2:c.1A>T	p.Met1?	p.M1?	ENST00000438362	NM_001242891.1	1	Atg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0058867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			530	32	534	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971173	21971173	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058867-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			326	253	611	0	ENST00000304494.5:c.185T>C	p.Leu62Pro	p.L62P	ENST00000304494	NM_000077.4	62	cTg/cCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0058868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	13	250	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0058868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			200	244	572	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0058868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			229	90	441	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0058868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	181	589	2	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099124	27099125	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0058868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			318	188	596	0	ENST00000324856.7:c.3539+2dup		p.X1180_splice	ENST00000324856	NM_006015.4	1180																																																																																
FGFR1	2260	MSKCC	GRCh37	8	38271166	38271166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058868-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			119	74	360	0	ENST00000425967.3:c.2542G>A	p.Gly848Ser	p.G848S	ENST00000425967	NM_001174067.1	848	Ggc/Agc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106099	27106099	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			364	270	479	0	ENST00000324856.7:c.5710G>T	p.Glu1904Ter	p.E1904*	ENST00000324856	NM_006015.4	1904	Gaa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACT			P-0057067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			455	361	440	0	ENST00000275493.2:c.2310_2311insTAC	p.Asp770_Asn771insTyr	p.D770_N771insY	ENST00000275493	NM_005228.3	770	gac/gACTac																																																																															
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587782272		P-0057067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			42	206	308	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
SDHA	6389	MSKCC	GRCh37	5	233750	233750	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs746165168		P-0057067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			153	153	289	0	ENST00000264932.6:c.1054C>T	p.Arg352Ter	p.R352*	ENST00000264932	NM_004168.2	352	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591900	48591900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			53	216	390	0	ENST00000342988.3:c.1063G>T	p.Asp355Tyr	p.D355Y	ENST00000342988	NM_005359.5	355	Gac/Tac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444304	49444304	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			324	284	536	0	ENST00000301067.7:c.3067C>T	p.Gln1023Ter	p.Q1023*	ENST00000301067	NM_003482.3	1023	Cag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770600	40770600	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs724159844		P-0057067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			177	135	363	0	ENST00000373198.4:c.2782G>A	p.Glu928Lys	p.E928K	ENST00000373198	NM_133170.3	928	Gag/Aag																																																																															
RET	5979	MSKCC	GRCh37	10	43622099	43622099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs79853121		P-0057067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			184	145	379	0	ENST00000355710.3:c.3116C>T	p.Pro1039Leu	p.P1039L	ENST00000355710	NM_020975.4	1039	cCg/cTg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437315	52437315	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0057067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			44	174	402	0	ENST00000460680.1:c.1730-1G>C		p.X577_splice	ENST00000460680	NM_004656.3	577																																																																																
KDR	3791	MSKCC	GRCh37	4	55971110	55971110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			189	159	329	0	ENST00000263923.4:c.1687G>A	p.Glu563Lys	p.E563K	ENST00000263923	NM_002253.2	563	Gag/Aag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162725466	162725466	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs889257496		P-0057067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			225	165	359	0	ENST00000367921.3:c.578C>G	p.Ser193Cys	p.S193C	ENST00000367921	NM_006182.2	193	tCt/tGt																																																																															
NF2	4771	MSKCC	GRCh37	22	30067911	30067911	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			45	223	384	0	ENST00000338641.4:c.1096G>T	p.Glu366Ter	p.E366*	ENST00000338641	NM_000268.3	366	Gaa/Taa																																																																															
HLA-C	3107	MSKCC	GRCh37	6	31239788	31239788	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			104	242	396	0	ENST00000376228.5:c.61G>C	p.Glu21Gln	p.E21Q	ENST00000376228	NM_002117.5	21	Gag/Cag																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782336	56782336	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0057067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			226	166	308	0	ENST00000308159.5:c.177G>T	p.Lys59Asn	p.K59N	ENST00000308159	NM_014669.4	59	aaG/aaT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132438	11132438	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			517	203	544	0	ENST00000344626.4:c.2654G>C	p.Arg885Pro	p.R885P	ENST00000344626	NM_003072.3	885	cGc/cCc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130649	29130649	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			30	194	421	0	ENST00000328354.6:c.61C>A	p.Pro21Thr	p.P21T	ENST00000328354	NM_007194.3	21	Ccc/Acc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130666	29130666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			24	193	385	0	ENST00000328354.6:c.44G>A	p.Ser15Asn	p.S15N	ENST00000328354	NM_007194.3	15	aGc/aAc																																																																															
TERT	7015	MSKCC	GRCh37	5	1253868	1253868	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1291687212		P-0057067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			153	135	418	0	ENST00000310581.5:c.3374C>T	p.Ser1125Leu	p.S1125L	ENST00000310581	NM_198253.2	1125	tCa/tTa																																																																															
APC	324	MSKCC	GRCh37	5	112179502	112179502	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			310	205	409	0	ENST00000257430.4:c.8211G>C	p.Glu2737Asp	p.E2737D	ENST00000257430	NM_000038.5	2737	gaG/gaC																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056523	26056523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057067-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			333	260	422	0	ENST00000343677.2:c.134C>T	p.Thr45Ile	p.T45I	ENST00000343677	NM_005319.3	45	aCc/aTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0058233-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			133	278	512	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7574000	7574000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0058233-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			93	216	415	0	ENST00000269305.4:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000269305	NM_001126112.2	343	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0058233-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			130	94	203	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440445	49440445	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058233-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			205	254	514	0	ENST00000301067.7:c.4365del	p.Cys1456AlafsTer50	p.C1456Afs*50	ENST00000301067	NM_003482.3	1455	taC/ta																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265521	152265521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058233-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			241	235	399	0	ENST00000206249.3:c.974C>T	p.Pro325Leu	p.P325L	ENST00000206249	NM_000125.3	325	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0058234-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			470	22	644	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604784	48604784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	54	534	1	ENST00000342988.3:c.1606C>A	p.Leu536Ile	p.L536I	ENST00000342988	NM_005359.5	536	Cta/Ata																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0058520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			262	132	293	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249462	110249462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058520-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			424	87	705	0	ENST00000374672.4:c.1111C>T	p.Pro371Ser	p.P371S	ENST00000374672	NM_004235.4	371	Ccc/Tcc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867540	35867541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1250237683		P-0058598-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			246	56	252	0	ENST00000303115.3:c.361dup	p.Ile121AsnfsTer8	p.I121Nfs*8	ENST00000303115	NM_002185.3	118	-/A																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528621	89528621	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780470195		P-0058598-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			263	60	465	0	ENST00000336596.2:c.2921C>T	p.Thr974Met	p.T974M	ENST00000336596	NM_005233.5	974	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577119	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0058598-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			305	98	623	0	ENST00000269305.4:c.819dup	p.Val274CysfsTer32	p.V274Cfs*32	ENST00000269305	NM_001126112.2	273	-/T																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0058598-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			256	48	352	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246105	46246105	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058598-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			323	82	383	0	ENST00000334344.6:c.4199A>T	p.Asp1400Val	p.D1400V	ENST00000334344	NM_152641.2	1400	gAt/gTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0058697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			140	54	296	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68981315	68981315	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866864487		P-0058697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			86	32	166	0	ENST00000288368.4:c.1387C>T	p.Arg463Cys	p.R463C	ENST00000288368	NM_024870.2	463	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49418715	49418715	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			187	76	383	0	ENST00000301067.7:c.15799A>G	p.Ile5267Val	p.I5267V	ENST00000301067	NM_003482.3	5267	Atc/Gtc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299096	15299096	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			160	64	412	0	ENST00000263388.2:c.1442del	p.Gly481ValfsTer118	p.G481Vfs*118	ENST00000263388	NM_000435.2	481	gGt/gt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909578	50909579	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0058697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			245	72	520	0	ENST00000440232.2:c.1383+1dup		p.Q461fs	ENST00000440232	NM_002691.3	461	cag/caGg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47144862	47144862	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	74	258	0	ENST00000409792.3:c.4891T>G	p.Cys1631Gly	p.C1631G	ENST00000409792	NM_014159.6	1631	Tgt/Ggt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164520	47164520	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0058697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			171	62	360	0	ENST00000409792.3:c.1606G>T	p.Glu536Ter	p.E536*	ENST00000409792	NM_014159.6	536	Gaa/Taa																																																																															
AR	367	MSKCC	GRCh37	X	66765360	66765360	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058697-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	47	496	0	ENST00000374690.3:c.372del	p.Glu124AspfsTer51	p.E124Dfs*51	ENST00000374690	NM_000044.3	124	gaG/ga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254791	16254791	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			452	323	530	1	ENST00000375759.3:c.2056G>T	p.Asp686Tyr	p.D686Y	ENST00000375759	NM_015001.2	686	Gat/Tat																																																																															
PALB2	79728	MSKCC	GRCh37	16	23614789	23614789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			301	65	341	0	ENST00000261584.4:c.3552C>G	p.His1184Gln	p.H1184Q	ENST00000261584	NM_024675.3	1184	caC/caG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0058710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			227	410	660	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906786	50906786	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778843530		P-0058710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			351	361	595	0	ENST00000440232.2:c.1174G>A	p.Val392Met	p.V392M	ENST00000440232	NM_002691.3	392	Gtg/Atg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266142	+	inframe_deletion	In_Frame_Del	DEL	CTCTGA	CTCTGA	-			P-0058710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			172	411	537	0	ENST00000349496.5:c.134_139del	p.Ser45_Ser47delinsCys	p.S45_S47delinsC	ENST00000349496	NM_001904.3	45	tCTCTGAgt/tgt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2949752	2949752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058710-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	271	528	0	ENST00000396946.4:c.3192G>T	p.Leu1064Phe	p.L1064F	ENST00000396946	NM_032415.4	1064	ttG/ttT																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0058740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			306	120	494	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C	rs886039483		P-0058740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			193	205	564	0	ENST00000269305.4:c.376T>G	p.Tyr126Asp	p.Y126D	ENST00000269305	NM_001126112.2	126	Tac/Gac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248519	212248519	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754829537		P-0058740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	219	735	0	ENST00000342788.4:c.3748C>T	p.Arg1250Trp	p.R1250W	ENST00000342788	NM_005235.2	1250	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0058740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	569	379	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206933	162206933	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777074432		P-0058740-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	160	565	0	ENST00000366898.1:c.742G>A	p.Val248Ile	p.V248I	ENST00000366898	NM_004562.2	248	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0058775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	130	495	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259442	55259442	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs397517127		P-0058775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			370	279	438	0	ENST00000275493.2:c.2500G>C	p.Val834Leu	p.V834L	ENST00000275493	NM_005228.3	834	Gtg/Ctg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259514	55259515	+	missense_variant	Missense_Mutation	DNP	CT	CT	AG	rs1057519847		P-0058775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			339	288	408	0	ENST00000275493.2:c.2572_2573inv	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	CTg/AGg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77047173	77047173	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	120	531	0	ENST00000356341.3:c.1371G>C	p.Met457Ile	p.M457I	ENST00000356341	NM_002576.4	457	atG/atC																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821646	72821646	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			482	75	568	0	ENST00000268489.5:c.10529G>T	p.Gly3510Val	p.G3510V	ENST00000268489	NM_006885.3	3510	gGc/gTc																																																																															
INSR	3643	MSKCC	GRCh37	19	7132309	7132309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	113	452	0	ENST00000302850.5:c.2702C>T	p.Ser901Phe	p.S901F	ENST00000302850	NM_000208.2	901	tCc/tTc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30311687	30311687	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058775-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	73	330	1	ENST00000262643.3:c.541G>T	p.Glu181Ter	p.E181*	ENST00000262643	NM_001238.2	181	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660548		P-0058787-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			598	162	376	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																															
WT1	7490	MSKCC	GRCh37	11	32417803	32417829	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CAGTGTGCTTCCTGCTGTGCATCTGTA	CAGTGTGCTTCCTGCTGTGCATCTGTA	-			P-0058787-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			438	44	267	0	ENST00000332351.3:c.1223_1249del	p.Leu408_Gly417delinsCys	p.L408_G417delinsC	ENST00000332351	NM_024426.4	408	tTACAGATGCACAGCAGGAAGCACACTGgt/tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108235807	108235807	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0058787-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			517	33	237	0	ENST00000278616.4:c.8851-2A>C		p.X2951_splice	ENST00000278616	NM_000051.3	2951																																																																																
PALB2	79728	MSKCC	GRCh37	16	23646495	23646495	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0058787-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			501	42	274	0	ENST00000261584.4:c.1372del	p.Thr458LeufsTer27	p.T458Lfs*27	ENST00000261584	NM_024675.3	458	Act/ct																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877855	151877867	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCTGAAGTTGG	CTCCTGAAGTTGG	-			P-0058787-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			481	129	301	0	ENST00000262189.6:c.7078_7090del	p.Pro2360Ter	p.P2360*	ENST00000262189	NM_170606.2	2360	CCAACTTCAGGAGta/ta																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395071	139395114	+	frameshift_variant	Frame_Shift_Del	DEL	ATGTTGGCATCTGCGCTGGCCTCCAGCAGGCGCTTGGCGGCATC	ATGTTGGCATCTGCGCTGGCCTCCAGCAGGCGCTTGGCGGCATC	-			P-0058787-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			591	82	332	0	ENST00000277541.6:c.5824_5867del	p.Asp1942ProfsTer38	p.D1942Pfs*38	ENST00000277541	NM_017617.3	1942	GATGCCGCCAAGCGCCTGCTGGAGGCCAGCGCAGATGCCAACATc/c																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0058802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	55	150	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0058802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	155	327	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217651	7217651	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0058802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	131	428	0	ENST00000380728.2:c.276del	p.Val93PhefsTer16	p.V93Ffs*16	ENST00000380728		92	aaA/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100152	27100155	+	frameshift_variant	Frame_Shift_Del	DEL	GGGG	GGGG	-			P-0058802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	159	508	0	ENST00000324856.7:c.3948_3951del	p.Gly1317CysfsTer163	p.G1317Cfs*163	ENST00000324856	NM_006015.4	1316	tcGGGG/tc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161806	56161806	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0058802-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			177	144	198	0	ENST00000399503.3:c.1301+2T>G		p.X434_splice	ENST00000399503	NM_005921.1	434																																																																																
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0058814-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			478	34	675	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860098	151860098	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs571653303		P-0058814-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	23	554	0	ENST00000262189.6:c.10564A>G	p.Ile3522Val	p.I3522V	ENST00000262189	NM_170606.2	3522	Atc/Gtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0058814-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	28	297	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0058815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	140	479	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0058815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	129	409	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932476	39932476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058815-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	102	753	0	ENST00000378444.4:c.2123C>T	p.Thr708Ile	p.T708I	ENST00000378444	NM_001123385.1	708	aCc/aTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0058816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			25	48	506	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0058816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			21	17	397	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916924	178916924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225060		P-0058816-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			64	18	379	0	ENST00000263967.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000263967	NM_006218.2	104	cCa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs1057517840		P-0058820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			197	802	771	6	ENST00000269305.4:c.626_627del	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279807	46279809	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-	rs553605982		P-0058820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1063	188	753	4	ENST00000371998.3:c.3739_3741del	p.Met1247del	p.M1247del	ENST00000371998		1245	ATG/-																																																																															
APC	324	MSKCC	GRCh37	5	112116585	112116585	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			120	232	485	2	ENST00000257430.4:c.631del	p.Glu211LysfsTer8	p.E211Kfs*8	ENST00000257430	NM_000038.5	210	atG/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0058820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	488	537	1	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858774	9858774	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs199784503		P-0058820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	304	668	2	ENST00000330684.3:c.2627T>C	p.Ile876Thr	p.I876T	ENST00000330684	NM_001134407.1	876	aTt/aCt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350054	89350054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			672	462	973	9	ENST00000301030.4:c.2896G>A	p.Ala966Thr	p.A966T	ENST00000301030	NM_001256183.1	966	Gcc/Acc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390125	89390125	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			149	260	655	0	ENST00000336596.2:c.874C>A	p.Pro292Thr	p.P292T	ENST00000336596	NM_005233.5	292	Cct/Act																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974794	21974795	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0058820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	411	731	2	ENST00000304494.5:c.32dup	p.Ser12PhefsTer3	p.S12Ffs*3	ENST00000304494	NM_000077.4	11	cct/ccCt																																																																															
APC	324	MSKCC	GRCh37	5	112116586	112116586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058820-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			335	19	482	0	ENST00000257430.4:c.631G>A	p.Glu211Lys	p.E211K	ENST00000257430	NM_000038.5	211	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0053609-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			464	63	287	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
ATM	472	MSKCC	GRCh37	11	108235838	108235838	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053609-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			500	32	424	0	ENST00000278616.4:c.8880G>T	p.Trp2960Cys	p.W2960C	ENST00000278616	NM_000051.3	2960	tgG/tgT																																																																															
RHOA	387	MSKCC	GRCh37	3	49405962	49405962	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053609-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			533	41	246	0	ENST00000418115.1:c.176A>G	p.Asp59Gly	p.D59G	ENST00000418115	NM_001664.2	59	gAc/gGc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0057675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			396	147	375	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107135	27107135	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0057675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			607	176	545	0	ENST00000324856.7:c.6746C>G	p.Ser2249Ter	p.S2249*	ENST00000324856	NM_006015.4	2249	tCa/tGa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984428	201984428	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			888	202	477	0	ENST00000359651.3:c.1093G>C	p.Glu365Gln	p.E365Q	ENST00000359651		365	Gag/Cag																																																																															
CDK8	1024	MSKCC	GRCh37	13	26927934	26927934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			235	76	319	0	ENST00000381527.3:c.373C>T	p.Arg125Trp	p.R125W	ENST00000381527	NM_001260.1	125	Cgg/Tgg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771873	135771873	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			511	176	507	0	ENST00000298552.3:c.3244C>A	p.Pro1082Thr	p.P1082T	ENST00000298552	NM_001162426.1	1082	Ccc/Acc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46740362	46740362	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			494	174	427	0	ENST00000371975.4:c.1842G>C	p.Lys614Asn	p.K614N	ENST00000371975	NM_003579.3	614	aaG/aaC																																																																															
MCL1	4170	MSKCC	GRCh37	1	150549859	150549859	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			820	168	386	0	ENST00000369026.2:c.1045A>G	p.Ile349Val	p.I349V	ENST00000369026	NM_021960.4	349	Ata/Gta																																																																															
PGBD5	79605	MSKCC	GRCh37	1	230561668	230561668	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0057675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			276	80	162	0				ENST00000391860	NM_001258311.1																																																																																	
GATA3	2625	MSKCC	GRCh37	10	8100624	8100624	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764299422		P-0057675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			474	196	589	0	ENST00000346208.3:c.598C>T	p.His200Tyr	p.H200Y	ENST00000346208		200	Cac/Tac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115382	115115383	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0057675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			315	132	305	0	ENST00000257566.3:c.941+2dup		p.X314_splice	ENST00000257566	NM_016569.3	314																																																																																
LATS2	26524	MSKCC	GRCh37	13	21562165	21562165	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			600	135	533	0	ENST00000382592.4:c.1754G>C	p.Arg585Thr	p.R585T	ENST00000382592	NM_014572.2	585	aGa/aCa																																																																															
CDH1	999	MSKCC	GRCh37	16	68862080	68862080	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0057675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			304	169	407	0	ENST00000261769.5:c.2168del	p.Leu723ArgfsTer47	p.L723Rfs*47	ENST00000261769	NM_004360.3	723	cTg/cg																																																																															
ARHGAP35	2909	MSKCC	GRCh37	19	47422248	47422248	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			399	140	454	0	ENST00000404338.3:c.316C>T	p.Gln106Ter	p.Q106*	ENST00000404338	NM_004491.4	106	Caa/Taa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162506	47162506	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			337	130	411	0	ENST00000409792.3:c.3620C>G	p.Ser1207Cys	p.S1207C	ENST00000409792	NM_014159.6	1207	tCt/tGt																																																																															
ALB	213	MSKCC	GRCh37	4	74283298	74283298	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			218	106	342	0	ENST00000295897.4:c.1340T>A	p.Leu447His	p.L447H	ENST00000295897	NM_000477.5	447	cTt/cAt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265533	152265533	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			374	153	407	0	ENST00000206249.3:c.986C>G	p.Ser329Cys	p.S329C	ENST00000206249	NM_000125.3	329	tCc/tGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874116	151874116	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			331	116	470	0	ENST00000262189.6:c.8422G>C	p.Asp2808His	p.D2808H	ENST00000262189	NM_170606.2	2808	Gat/Cat																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285954	38285954	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0057675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			1085	120	412	0	ENST00000425967.3:c.458-1G>A		p.X153_splice	ENST00000425967	NM_001174067.1	153																																																																																
AMER1	139285	MSKCC	GRCh37	X	63410844	63410844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057675-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			366	134	437	0	ENST00000330258.3:c.2323G>A	p.Glu775Lys	p.E775K	ENST00000330258	NM_152424.3	775	Gag/Aag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047299	180047299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058228-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			568	141	502	0	ENST00000261937.6:c.2416G>A	p.Ala806Thr	p.A806T	ENST00000261937	NM_182925.4	806	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578261	7578262	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	A			P-0058228-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			444	139	546	0	ENST00000269305.4:c.587_588delinsT	p.Arg196LeufsTer51	p.R196Lfs*51	ENST00000269305	NM_001126112.2	196	cGA/cT																																																																															
TET1	80312	MSKCC	GRCh37	10	70333404	70333404	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058228-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			322	138	479	0	ENST00000373644.4:c.1309C>G	p.Pro437Ala	p.P437A	ENST00000373644	NM_030625.2	437	Cca/Gca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624248	89624249	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCGT			P-0058228-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			113	40	122	0	ENST00000371953.3:c.24_27dup	p.Ser10ArgfsTer2	p.S10Rfs*2	ENST00000371953	NM_000314.4	8	atc/aTCGTtc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086045	16086045	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058228-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			503	140	491	0	ENST00000281043.3:c.1221del	p.His407GlnfsTer6	p.H407Qfs*6	ENST00000281043	NM_005378.4	407	caC/ca																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589602	67589603	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTTCAAGAAAAAAGTCGAGAATATGAT			P-0058228-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			236	32	138	0	ENST00000274335.5:c.1366_1392dup	p.Phe456_Asp464dup	p.F456_D464dup	ENST00000274335		456	-/TTTCAAGAAAAAAGTCGAGAATATGAT																																																																															
IRF4	3662	MSKCC	GRCh37	6	398852	398852	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058228-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			456	124	498	0	ENST00000380956.4:c.662A>T	p.Tyr221Phe	p.Y221F	ENST00000380956	NM_001195286.1	221	tAt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0058295-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			294	97	464	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0058295-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			344	129	362	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267360	198267360	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs374250186		P-0058494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			213	216	537	0	ENST00000335508.6:c.1997A>T	p.Lys666Met	p.K666M	ENST00000335508	NM_012433.2	666	aAg/aTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140476745	140476745	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs878854675		P-0058494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	40	409	0	ENST00000288602.6:c.1661T>C	p.Ile554Thr	p.I554T	ENST00000288602	NM_004333.4	554	aTa/aCa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968239	2968239	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	164	726	0	ENST00000396946.4:c.1747C>A	p.His583Asn	p.H583N	ENST00000396946	NM_032415.4	583	Cat/Aat																																																																															
HGF	3082	MSKCC	GRCh37	7	81346668	81346668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	103	470	0	ENST00000222390.5:c.1285G>A	p.Glu429Lys	p.E429K	ENST00000222390	NM_000601.4	429	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0058494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			125	145	372	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274264	10274264	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			174	121	708	0	ENST00000330684.3:c.5G>T	p.Gly2Val	p.G2V	ENST00000330684	NM_001134407.1	2	gGc/gTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29653035	29653035	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			247	389	659	0	ENST00000358273.4:c.5033A>T	p.Tyr1678Phe	p.Y1678F	ENST00000358273	NM_001042492.2	1678	tAt/tTt																																																																															
KDR	3791	MSKCC	GRCh37	4	55946158	55946159	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0058494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			226	77	725	1	ENST00000263923.4:c.4020_4021delinsAA	p.Gln1341Lys	p.Q1341K	ENST00000263923	NM_002253.2	1340	gcCCag/gcAAag																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143181718	143181718	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0058494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			90	74	258	2	ENST00000262992.4:c.616-1G>T		p.X206_splice	ENST00000262992	NM_001101669.1	206																																																																																
TERT	7015	MSKCC	GRCh37	5	1295351	1295351	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0058494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			264	161	973	0				ENST00000310581	NM_198253.2																																																																																	
PDGFRB	5159	MSKCC	GRCh37	5	149503836	149503836	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			251	151	714	0	ENST00000261799.4:c.2000T>A	p.Leu667Gln	p.L667Q	ENST00000261799	NM_002609.3	667	cTg/cAg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721268	176721268	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs371532898		P-0058494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			244	188	821	0	ENST00000439151.2:c.6899C>G	p.Ala2300Gly	p.A2300G	ENST00000439151	NM_022455.4	2300	gCt/gGt																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225493	26225493	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			742	91	1001	0	ENST00000360408.1:c.111G>T	p.Lys37Asn	p.K37N	ENST00000360408	NM_003532.2	37	aaG/aaT																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157454311	157454311	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150249745		P-0058494-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	47	609	0	ENST00000346085.5:c.2521G>A	p.Gly841Ser	p.G841S	ENST00000346085	NM_020732.3	841	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0058500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			290	129	696	3	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0058500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			209	409	768	16	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			203	74	573	2	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170799	11170799	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs878854234		P-0058500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	188	698	8	ENST00000344626.4:c.4847C>T	p.Pro1616Leu	p.P1616L	ENST00000344626	NM_003072.3	1616	cCg/cTg																																																																															
TP63	8626	MSKCC	GRCh37	3	189456525	189456525	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058500-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			443	120	601	1	ENST00000264731.3:c.286A>C	p.Ile96Leu	p.I96L	ENST00000264731	NM_003722.4	96	Atc/Ctc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578435	7578435	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			360	361	938	0	ENST00000269305.4:c.495del	p.Gln165HisfsTer5	p.Q165Hfs*5	ENST00000269305	NM_001126112.2	165	caG/ca																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794494	242794494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	141	749	0	ENST00000334409.5:c.448G>A	p.Glu150Lys	p.E150K	ENST00000334409	NM_005018.2	150	Gaa/Aaa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825216	50825529	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTTTCCTAATCACTAGGAGAACTTTCCAGTCTAAAAACTAAGCAAAATAAATCATTTATAAGGTCTTGTGCCTGAGCACATTTAATTATTTTATCCAAATCATTTATTTCTCTCTGTTGTTCTGACTATCCAAAGCTACACCATCAATTTTATGGTTTTTCTGTTCTCAAATACTGCTGGGACAACTTAACATTTTGATTTAAGCATTTGATAAATAGGTTGTATGTATTTTTTTCTCTGCGTGTTTTTAGATCAGCAGGTCAAAAGGTACAAGATTGTTACTTCTATCAAATTTTTATGGAAAAAAATGAG	TTTTTTCCTAATCACTAGGAGAACTTTCCAGTCTAAAAACTAAGCAAAATAAATCATTTATAAGGTCTTGTGCCTGAGCACATTTAATTATTTTATCCAAATCATTTATTTCTCTCTGTTGTTCTGACTATCCAAAGCTACACCATCAATTTTATGGTTTTTCTGTTCTCAAATACTGCTGGGACAACTTAACATTTTGATTTAAGCATTTGATAAATAGGTTGTATGTATTTTTTTCTCTGCGTGTTTTTAGATCAGCAGGTCAAAAGGTACAAGATTGTTACTTCTATCAAATTTTTATGGAAAAAAATGAG	-			P-0058504-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			20	12	29	0	ENST00000398568.2:c.2100-253_2160del		p.X700_splice	ENST00000398568	NM_001042412.1	700																																																																																
ATRX	546	MSKCC	GRCh37	X	76889130	76889130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058589-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			95	190	207	2	ENST00000373344.5:c.4880C>A	p.Pro1627His	p.P1627H	ENST00000373344	NM_000489.3	1627	cCt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577083	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0058595-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			454	11	437	0	ENST00000269305.4:c.855_856delinsTT	p.Glu285_Glu286delinsAspTer	p.E285_E286delinsD*	ENST00000269305	NM_001126112.2	285	gaGGaa/gaTTaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0058595-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			229	9	265	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133218282	133218282	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058595-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			374	22	354	0	ENST00000320574.5:c.5329A>T	p.Ser1777Cys	p.S1777C	ENST00000320574	NM_006231.2	1777	Agt/Tgt																																																																															
MST1	4485	MSKCC	GRCh37	3	49722237	49722237	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1157230035		P-0058595-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			202	11	271	0	ENST00000449682.2:c.1703G>A	p.Arg568Gln	p.R568Q	ENST00000449682	NM_020998.3	568	cGg/cAg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081511	143081511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0058595-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			266	17	301	0	ENST00000262992.4:c.1563G>C	p.Trp521Cys	p.W521C	ENST00000262992	NM_001101669.1	521	tgG/tgC																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410868	63410868	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058595-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			201	20	212	0	ENST00000330258.3:c.2299G>T	p.Val767Leu	p.V767L	ENST00000330258	NM_152424.3	767	Gtg/Ttg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0058635-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	23	451	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579316	7579317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0058635-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			246	16	357	0	ENST00000269305.4:c.369_370dup	p.Cys124PhefsTer47	p.C124Ffs*47	ENST00000269305	NM_001126112.2	124	tgc/tTTgc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437618	52437618	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0058635-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			271	21	533	0	ENST00000460680.1:c.1543A>C	p.Asn515His	p.N515H	ENST00000460680	NM_004656.3	515	Aac/Cac																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748004	72748005	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	AA	AA	CC			P-0058635-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			338	21	343	0	ENST00000357731.5:c.173_174delinsGG	p.Leu58Arg	p.L58R	ENST00000357731	NM_173808.2	58	cTT/cGG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0058635-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			228	115	220	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864544	57864544	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058635-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			304	20	501	0	ENST00000228682.2:c.2021A>C	p.Gln674Pro	p.Q674P	ENST00000228682	NM_005269.2	674	cAg/cCg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0058642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			272	337	518	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0058642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			142	194	555	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50481257	50481257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058642-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			273	74	424	0	ENST00000394963.4:c.643C>T	p.Leu215Phe	p.L215F	ENST00000394963	NM_003076.4	215	Ctc/Ttc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0058650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			159	15	150	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0058650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			316	237	327	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0058650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	63	460	0	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0058650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			195	61	190	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176050372	176050372	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs766634588		P-0058650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	12	343	0	ENST00000367669.3:c.1193A>C	p.Lys398Thr	p.K398T	ENST00000367669	NM_022457.5	398	aAg/aCg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46251014	46251015	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0058650-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	23	233	0	ENST00000371998.3:c.23_24delinsAT	p.Leu8Tyr	p.L8Y	ENST00000371998		8	tTG/tAT																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255658	16255658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	136	403	0	ENST00000375759.3:c.2923G>A	p.Ala975Thr	p.A975T	ENST00000375759	NM_015001.2	975	Gct/Act																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			224	82	317	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																																																															
SETDB1	9869	MSKCC	GRCh37	1	150915528	150915528	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	33	285	0	ENST00000271640.5:c.874A>G	p.Arg292Gly	p.R292G	ENST00000271640	NM_001145415.1	292	Agg/Ggg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	75	208	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																															
YAP1	10413	MSKCC	GRCh37	11	102076743	102076743	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	119	389	0	ENST00000282441.5:c.922C>G	p.Leu308Val	p.L308V	ENST00000282441	NM_001130145.2	308	Ctg/Gtg																																																																															
ATM	472	MSKCC	GRCh37	11	108106510	108106510	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			410	24	267	0	ENST00000278616.4:c.445A>C	p.Ile149Leu	p.I149L	ENST00000278616	NM_000051.3	149	Att/Ctt																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			345	82	268	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			255	68	245	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944914	31944914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			235	60	179	0	ENST00000340398.3:c.187C>T	p.Arg63Trp	p.R63W	ENST00000340398	NM_001013699.2	63	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445230	49445230	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201896284		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			531	158	555	0	ENST00000301067.7:c.2236C>T	p.Arg746Trp	p.R746W	ENST00000301067	NM_003482.3	746	Cgg/Tgg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563294	21563294	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1249786123		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			493	39	537	0	ENST00000382592.4:c.625C>T	p.Arg209Trp	p.R209W	ENST00000382592	NM_014572.2	209	Cgg/Tgg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240072	41240072	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs989533582		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			162	61	210	0	ENST00000379561.5:c.278C>T	p.Ala93Val	p.A93V	ENST00000379561	NM_002015.3	93	gCg/gTg																																																																															
RB1	5925	MSKCC	GRCh37	13	49030396	49030396	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			404	49	268	0	ENST00000267163.4:c.1871C>G	p.Ser624Cys	p.S624C	ENST00000267163	NM_000321.2	624	tCt/tGt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515036	103515036	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775996769		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			428	144	391	0	ENST00000355739.4:c.1537G>A	p.Ala513Thr	p.A513T	ENST00000355739	NM_000123.3	513	Gca/Aca																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436554	110436554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	60	471	0	ENST00000375856.3:c.1847G>A	p.Cys616Tyr	p.C616Y	ENST00000375856	NM_003749.2	616	tGc/tAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437427	110437427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			325	69	319	0	ENST00000375856.3:c.974A>G	p.His325Arg	p.H325R	ENST00000375856	NM_003749.2	325	cAc/cGc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30047522	30047522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			260	61	217	0	ENST00000331968.5:c.2479C>T	p.Arg827Cys	p.R827C	ENST00000331968	NM_002742.2	827	Cgc/Tgc																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			458	75	381	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			467	61	387	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																															
B2M	567	MSKCC	GRCh37	15	45003813	45003813	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	57	395	0	ENST00000558401.1:c.67+2T>C		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
BLM	641	MSKCC	GRCh37	15	91292892	91292892	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765089689		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			495	54	357	1	ENST00000355112.3:c.394C>T	p.Arg132Trp	p.R132W	ENST00000355112	NM_000057.2	132	Cgg/Tgg																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2089996	2089996	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			509	50	459	0	ENST00000219066.1:c.868T>C	p.Cys290Arg	p.C290R	ENST00000219066	NM_002528.5	290	Tgt/Cgt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129091	2129091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			453	124	382	0	ENST00000219476.3:c.3025G>A	p.Ala1009Thr	p.A1009T	ENST00000219476	NM_000548.3	1009	Gcc/Acc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223541	2223541	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs942789564		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			537	55	461	0	ENST00000326181.6:c.1072G>A	p.Ala358Thr	p.A358T	ENST00000326181	NM_032271.2	358	Gca/Aca																																																																															
SLX4	84464	MSKCC	GRCh37	16	3656528	3656528	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200803578		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	122	401	0	ENST00000294008.3:c.707C>T	p.Ala236Val	p.A236V	ENST00000294008	NM_032444.2	236	gCg/gTg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783988	50783988	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1402238737		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			438	100	313	0	ENST00000398568.2:c.379G>A	p.Val127Met	p.V127M	ENST00000398568	NM_001042412.1	127	Gtg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991344	72991344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148024459		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			390	117	318	1	ENST00000268489.5:c.2701G>A	p.Ala901Thr	p.A901T	ENST00000268489	NM_006885.3	901	Gcc/Acc																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86544951	86544951	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			321	28	352	1	ENST00000262426.4:c.776C>A	p.Pro259Gln	p.P259Q	ENST00000262426	NM_001451.2	259	cCg/cAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15973548	15973548	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1000518180		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			451	149	365	0	ENST00000268712.3:c.4444C>T	p.Arg1482Trp	p.R1482W	ENST00000268712	NM_006311.3	1482	Cgg/Tgg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			441	101	310	2	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	83	344	2	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
CDK12	51755	MSKCC	GRCh37	17	37676298	37676298	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	57	261	0	ENST00000447079.4:c.3053A>G	p.Asp1018Gly	p.D1018G	ENST00000447079	NM_015083.1	1018	gAc/gGc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	123	310	0	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
STAT3	6774	MSKCC	GRCh37	17	40485689	40485689	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	44	283	0	ENST00000264657.5:c.1049+2T>C		p.X350_splice	ENST00000264657	NM_139276.2	350																																																																																
EZH1	2145	MSKCC	GRCh37	17	40864339	40864339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			483	59	329	0	ENST00000428826.2:c.1369G>A	p.Ala457Thr	p.A457T	ENST00000428826		457	Gcc/Acc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs758630849		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			392	102	338	0	ENST00000305921.3:c.1349del	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59876570	59876570	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	118	361	0	ENST00000259008.2:c.1231A>T	p.Thr411Ser	p.T411S	ENST00000259008	NM_032043.2	411	Aca/Tca																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39584467	39584467	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs554581051		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			514	40	267	0	ENST00000262039.4:c.1132C>T	p.Arg378Cys	p.R378C	ENST00000262039	NM_002647.2	378	Cgt/Tgt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2213545	2213545	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			437	46	373	0	ENST00000398665.3:c.1565A>G	p.Asn522Ser	p.N522S	ENST00000398665	NM_032482.2	522	aAc/aGc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216451	2216451	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			429	139	410	1	ENST00000398665.3:c.2095T>C	p.Phe699Leu	p.F699L	ENST00000398665	NM_032482.2	699	Ttc/Ctc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274304	5274304	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	97	409	1	ENST00000357368.4:c.143del	p.Gly48ValfsTer17	p.G48Vfs*17	ENST00000357368	NM_002850.3	48	gGt/gt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10246525	10246525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			372	96	299	0	ENST00000340748.4:c.4612C>T	p.Arg1538Cys	p.R1538C	ENST00000340748		1538	Cgc/Tgc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031170	11031170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			447	141	408	0	ENST00000327064.4:c.1255C>T	p.Arg419Trp	p.R419W	ENST00000327064	NM_199141.1	419	Cgg/Tgg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271919	15271919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376494303		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	129	550	0	ENST00000263388.2:c.6520C>T	p.Arg2174Trp	p.R2174W	ENST00000263388	NM_000435.2	2174	Cgg/Tgg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18961556	18961556	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	32	302	0	ENST00000262803.5:c.689A>G	p.Gln230Arg	p.Q230R	ENST00000262803	NM_002911.3	230	cAg/cGg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976917	18976917	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	45	364	0	ENST00000262803.5:c.3302A>G	p.Tyr1101Cys	p.Y1101C	ENST00000262803	NM_002911.3	1101	tAc/tGc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214398	36214398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs868041281		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	95	308	1	ENST00000222270.7:c.3057del	p.Gly1020AlafsTer4	p.G1020Afs*4	ENST00000222270	NM_014727.1	1018	Aaa/aa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229453	36229453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	68	352	0	ENST00000222270.7:c.8143A>G	p.Asn2715Asp	p.N2715D	ENST00000222270	NM_014727.1	2715	Aac/Gac																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	117	333	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912858	50912858	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1306540639		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	107	383	0	ENST00000440232.2:c.2089G>A	p.Ala697Thr	p.A697T	ENST00000440232	NM_002691.3	697	Gcc/Acc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	119	415	1	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607487	46607487	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			475	137	440	4	ENST00000263734.3:c.1681del	p.Gln561SerfsTer7	p.Q561Sfs*7	ENST00000263734	NM_001430.4	559	aCc/ac																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182139	99182139	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			336	94	310	0	ENST00000074304.5:c.2204G>T	p.Gly735Val	p.G735V	ENST00000074304	NM_001134224.1	735	gGg/gTg																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			481	58	329	0	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	245	477	9	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790171	40790171	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760735173		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			377	126	308	0	ENST00000373198.4:c.2560C>T	p.Arg854Cys	p.R854C	ENST00000373198	NM_133170.3	854	Cgc/Tgc																																																																															
ERG	2078	MSKCC	GRCh37	21	39755704	39755704	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1404777513		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			352	112	362	0	ENST00000288319.7:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000288319	NM_182918.3	354	cGg/cAg																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446733	29446733	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	109	379	0	ENST00000544604.2:c.2567del	p.Gly856ValfsTer100	p.G856Vfs*100	ENST00000544604	NM_001206998.1	855	tGg/tg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37061799	37061799	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			348	117	331	0	ENST00000231790.2:c.885-2A>G		p.X295_splice	ENST00000231790	NM_000249.3	295																																																																																
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			496	144	374	1	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437161	52437161	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	123	333	0	ENST00000460680.1:c.1883C>A	p.Ser628Ter	p.S628*	ENST00000460680	NM_004656.3	628	tCa/tAa																																																																															
ATR	545	MSKCC	GRCh37	3	142255005	142255005	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			305	86	233	0	ENST00000350721.4:c.3764del	p.Leu1255TyrfsTer7	p.L1255Yfs*7	ENST00000350721	NM_001184.3	1255	tTa/ta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			303	104	294	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197848	66197848	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			324	33	207	0	ENST00000273854.3:c.2853-2A>G		p.X951_splice	ENST00000273854	NM_004439.5	951																																																																																
ALB	213	MSKCC	GRCh37	4	74283928	74283928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	99	275	0	ENST00000295897.4:c.1552G>A	p.Asp518Asn	p.D518N	ENST00000295897	NM_000477.5	518	Gat/Aat																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38967280	38967280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770728330		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	93	313	0	ENST00000357387.3:c.1201C>T	p.Arg401Cys	p.R401C	ENST00000357387	NM_152756.3	401	Cgt/Tgt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178023	56178023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	122	390	0	ENST00000399503.3:c.2996C>T	p.Thr999Ile	p.T999I	ENST00000399503	NM_005921.1	999	aCa/aTa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79950580	79950580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			327	109	296	0	ENST00000265081.6:c.34G>A	p.Ala12Thr	p.A12T	ENST00000265081	NM_002439.4	12	Gct/Act																																																																															
MSH3	4437	MSKCC	GRCh37	5	79974893	79974894	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	41	302	0	ENST00000265081.6:c.1323_1324del	p.His441GlnfsTer6	p.H441Qfs*6	ENST00000265081	NM_002439.4	441	CAc/c																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			274	77	192	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			498	123	378	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460474	149460474	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			466	57	458	0	ENST00000286301.3:c.163T>C	p.Ser55Pro	p.S55P	ENST00000286301	NM_005211.3	55	Tca/Cca																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460500	149460500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			436	116	447	2	ENST00000286301.3:c.137G>A	p.Gly46Asp	p.G46D	ENST00000286301	NM_005211.3	46	gGc/gAc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520696	176520696	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			405	39	318	0	ENST00000292408.4:c.1439A>G	p.Gln480Arg	p.Q480R	ENST00000292408	NM_213647.1	480	cAg/cGg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187939	32187939	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			490	58	397	0	ENST00000375023.3:c.1282A>G	p.Thr428Ala	p.T428A	ENST00000375023	NM_004557.3	428	Acc/Gcc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001540	150001540	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			334	88	282	0	ENST00000253339.5:c.2064del	p.Glu689AsnfsTer18	p.E689Nfs*18	ENST00000253339		688	aaA/aa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099411	157099412	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCAA			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			662	77	505	0	ENST00000346085.5:c.353_354insACAGCA	p.Gln130_Gln131dup	p.Q130_Q131dup	ENST00000346085	NM_020732.3	130	-/CAGCAA																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522022	157522022	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs745566888		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	46	449	0	ENST00000346085.5:c.4294A>G	p.Met1432Val	p.M1432V	ENST00000346085	NM_020732.3	1432	Atg/Gtg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527805	157527805	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			565	40	445	0	ENST00000346085.5:c.5530A>G	p.Arg1844Gly	p.R1844G	ENST00000346085	NM_020732.3	1844	Agg/Ggg																																																																															
HGF	3082	MSKCC	GRCh37	7	81381571	81381571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			382	31	229	0	ENST00000222390.5:c.490C>T	p.Pro164Ser	p.P164S	ENST00000222390	NM_000601.4	164	Cct/Tct																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508646	106508646	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			454	48	411	0	ENST00000359195.3:c.640A>G	p.Lys214Glu	p.K214E	ENST00000359195	NM_002649.2	214	Aag/Gag																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371830	55371830	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1457048078		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			295	73	417	0	ENST00000297316.4:c.520G>A	p.Val174Met	p.V174M	ENST00000297316	NM_022454.3	174	Gtg/Atg																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5534987	5534987	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs773744325		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			470	48	347	0	ENST00000397747.3:c.298T>C	p.Tyr100His	p.Y100H	ENST00000397747	NM_025239.3	100	Tac/Cac																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5549526	5549526	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			460	117	392	0	ENST00000397747.3:c.557del	p.Pro186LeufsTer14	p.P186Lfs*14	ENST00000397747	NM_025239.3	185	Ccc/cc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139815506	139815506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			494	55	308	0	ENST00000247668.2:c.977G>T	p.Arg326Met	p.R326M	ENST00000247668	NM_021138.3	326	aGg/aTg																																																																															
AR	367	MSKCC	GRCh37	X	66765182	66765182	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			77	18	97	1	ENST00000374690.3:c.194A>T	p.Gln65Leu	p.Q65L	ENST00000374690	NM_000044.3	65	cAg/cTg																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0058662-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			79	23	98	0	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81372744	81372744	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1168082930		P-0058683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			462	57	354	0	ENST00000222390.5:c.790G>A	p.Asp264Asn	p.D264N	ENST00000222390	NM_000601.4	264	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0058683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			511	96	426	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0058683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			298	64	286	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444791	49444791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			561	100	638	0	ENST00000301067.7:c.2675C>T	p.Ser892Phe	p.S892F	ENST00000301067	NM_003482.3	892	tCt/tTt																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813375	102813375	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			541	66	504	0	ENST00000307046.8:c.314T>C	p.Leu105Pro	p.L105P	ENST00000307046	NM_001111285.1	105	cTg/cCg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107995	30107995	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			476	53	389	0	ENST00000331968.5:c.812A>T	p.His271Leu	p.H271L	ENST00000331968	NM_002742.2	271	cAc/cTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29653010	29653014	+	frameshift_variant	Frame_Shift_Del	DEL	GCTTA	GCTTA	-			P-0058683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	100	403	0	ENST00000358273.4:c.5008_5012del	p.Ala1670ArgfsTer10	p.A1670Rfs*10	ENST00000358273	NM_001042492.2	1670	GCTTAc/c																																																																															
STK11	6794	MSKCC	GRCh37	19	1221954	1221955	+	missense_variant	Missense_Mutation	DNP	TT	TT	CA			P-0058683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			403	60	376	0	ENST00000326873.7:c.869_870delinsCA	p.Leu290Pro	p.L290P	ENST00000326873	NM_000455.4	290	cTT/cCA																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45872250	45872250	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0058683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			642	83	569	0	ENST00000391945.4:c.184del	p.Ala62HisfsTer6	p.A62Hfs*6	ENST00000391945	NM_000400.3	62	Gca/ca																																																																															
APC	324	MSKCC	GRCh37	5	112177115	112177115	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1370108946		P-0058683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			560	111	512	0	ENST00000257430.4:c.5824G>T	p.Asp1942Tyr	p.D1942Y	ENST00000257430	NM_000038.5	1942	Gac/Tac																																																																															
FLT4	2324	MSKCC	GRCh37	5	180041115	180041115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			631	71	489	0	ENST00000261937.6:c.3284G>T	p.Ser1095Ile	p.S1095I	ENST00000261937	NM_182925.4	1095	aGt/aTt																																																																															
IRF4	3662	MSKCC	GRCh37	6	401686	401686	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			791	79	618	0	ENST00000380956.4:c.1008G>T	p.Trp336Cys	p.W336C	ENST00000380956	NM_001195286.1	336	tgG/tgT																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671439	30671439	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			637	123	581	0	ENST00000376406.3:c.5521del	p.Glu1841LysfsTer17	p.E1841Kfs*17	ENST00000376406	NM_014641.2	1841	Gaa/aa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500796	8500796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058683-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			474	91	435	0	ENST00000356435.5:c.2086G>T	p.Gly696Cys	p.G696C	ENST00000356435		696	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578467	7578467	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	357	547	1	ENST00000269305.4:c.463A>C	p.Thr155Pro	p.T155P	ENST00000269305	NM_001126112.2	155	Acc/Ccc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040683	47040683	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			170	271	245	0	ENST00000329236.7:c.1084C>T	p.Gln362Ter	p.Q362*	ENST00000329236	NM_001204466.1	362	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610198	10610198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			384	380	498	0	ENST00000171111.5:c.512G>T	p.Cys171Phe	p.C171F	ENST00000171111	NM_203500.1	171	tGc/tTc																																																																															
ATRX	546	MSKCC	GRCh37	X	76778785	76778787	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			191	74	218	0	ENST00000373344.5:c.6792_6794del	p.Glu2265del	p.E2265del	ENST00000373344	NM_000489.3	2264	gaAGAg/gag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484335	8484335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			199	83	352	0	ENST00000356435.5:c.3197G>T	p.Arg1066Leu	p.R1066L	ENST00000356435		1066	cGa/cTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629328	187629328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772458580		P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			563	148	519	1	ENST00000441802.2:c.1654G>A	p.Glu552Lys	p.E552K	ENST00000441802	NM_005245.3	552	Gaa/Aaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244158	153244158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			722	195	523	2	ENST00000281708.4:c.1999G>T	p.Gly667Trp	p.G667W	ENST00000281708	NM_033632.3	667	Ggg/Tgg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120863	115120863	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			256	423	516	0	ENST00000257566.3:c.143C>A	p.Pro48His	p.P48H	ENST00000257566	NM_016569.3	48	cCc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575666	48575667	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			104	54	240	0	ENST00000342988.3:c.430_431del	p.Ser144ArgfsTer7	p.S144Rfs*7	ENST00000342988	NM_005359.5	142	gaTCtc/gatc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11030338	11030340	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			281	310	468	0	ENST00000327064.4:c.1091_1093del	p.Glu364del	p.E364del	ENST00000327064	NM_199141.1	363	aAAGaa/aaa																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46608737	46608737	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	305	470	0	ENST00000263734.3:c.2048C>A	p.Ser683Tyr	p.S683Y	ENST00000263734	NM_001430.4	683	tCt/tAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573654	48573654	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			164	89	372	0	ENST00000342988.3:c.238G>T	p.Gly80Trp	p.G80W	ENST00000342988	NM_005359.5	80	Ggg/Tgg																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166125	118166125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			376	371	571	2	ENST00000369448.3:c.635G>T	p.Gly212Val	p.G212V	ENST00000369448	NM_017709.3	212	gGg/gTg																																																																															
ATM	472	MSKCC	GRCh37	11	108121529	108121529	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	410	429	0	ENST00000278616.4:c.1337A>T	p.Gln446Leu	p.Q446L	ENST00000278616	NM_000051.3	446	cAg/cTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245891	46245891	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	413	441	0	ENST00000334344.6:c.3985G>T	p.Glu1329Ter	p.E1329*	ENST00000334344	NM_152641.2	1329	Gaa/Taa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061172	38061172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	585	525	0	ENST00000250448.2:c.817G>T	p.Gly273Trp	p.G273W	ENST00000250448	NM_004496.3	273	Ggg/Tgg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799243	88799243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			265	291	447	1	ENST00000360948.2:c.142C>T	p.Pro48Ser	p.P48S	ENST00000360948	NM_001012338.2	48	Ccg/Tcg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821427	72821427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			664	303	461	0	ENST00000268489.5:c.10748C>T	p.Thr3583Ile	p.T3583I	ENST00000268489	NM_006885.3	3583	aCc/aTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29528087	29528088	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			87	96	149	0	ENST00000358273.4:c.1095_1096del	p.Gly367GlnfsTer11	p.G367Qfs*11	ENST00000358273	NM_001042492.2	365	tcAAga/tcga																																																																															
NF1	4763	MSKCC	GRCh37	17	29556953	29556953	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			84	41	157	0	ENST00000358273.4:c.2951G>T	p.Gly984Val	p.G984V	ENST00000358273	NM_001042492.2	984	gGg/gTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905764	50905764	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			387	394	625	0	ENST00000440232.2:c.812G>T	p.Gly271Val	p.G271V	ENST00000440232	NM_002691.3	271	gGg/gTg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48028233	48028233	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587781673		P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			559	163	365	0	ENST00000234420.5:c.3111C>G	p.Phe1037Leu	p.F1037L	ENST00000234420	NM_000179.2	1037	ttC/ttG																																																																															
ETAA1	54465	MSKCC	GRCh37	2	67637160	67637160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			134	90	315	0	ENST00000272342.5:c.2771C>T	p.Ser924Leu	p.S924L	ENST00000272342	NM_019002.3	924	tCa/tTa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288897	212288897	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			361	143	383	0	ENST00000342788.4:c.2849A>T	p.Tyr950Phe	p.Y950F	ENST00000342788	NM_005235.2	950	tAc/tTc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660919	227660919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			762	317	578	0	ENST00000305123.5:c.2536G>A	p.Asp846Asn	p.D846N	ENST00000305123	NM_005544.2	846	Gac/Aac																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138376660	138376661	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			379	98	279	0	ENST00000289153.2:c.2813_2814del	p.Phe938TrpfsTer10	p.F938Wfs*10	ENST00000289153	NM_006219.2	938	tTT/t																																																																															
ATR	545	MSKCC	GRCh37	3	142274969	142274969	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			258	173	300	0	ENST00000350721.4:c.2091A>T	p.Lys697Asn	p.K697N	ENST00000350721	NM_001184.3	697	aaA/aaT																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143114349	143114349	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			283	140	293	0	ENST00000262992.4:c.1073-1G>T		p.X358_splice	ENST00000262992	NM_001101669.1	358																																																																																
FLT4	2324	MSKCC	GRCh37	5	180049789	180049789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			516	255	380	0	ENST00000261937.6:c.1599G>T	p.Lys533Asn	p.K533N	ENST00000261937	NM_182925.4	533	aaG/aaT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180052983	180052983	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			675	340	576	1	ENST00000261937.6:c.1307C>A	p.Ser436Ter	p.S436*	ENST00000261937	NM_182925.4	436	tCg/tAg																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271470	26271470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			584	200	639	0	ENST00000305910.3:c.143C>A	p.Ala48Asp	p.A48D	ENST00000305910	NM_003534.2	48	gCt/gAt																																																																															
HGF	3082	MSKCC	GRCh37	7	81335028	81335028	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			194	136	334	1	ENST00000222390.5:c.1799C>A	p.Pro600His	p.P600H	ENST00000222390	NM_000601.4	600	cCt/cAt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508395	106508395	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			619	122	472	0	ENST00000359195.3:c.390del	p.Ser131AlafsTer27	p.S131Afs*27	ENST00000359195	NM_002649.2	130	cGg/cg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151868349	151868349	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			504	148	379	0	ENST00000262189.6:c.9453G>T	p.Gln3151His	p.Q3151H	ENST00000262189	NM_170606.2	3151	caG/caT																																																																															
PREX2	80243	MSKCC	GRCh37	8	68995598	68995598	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			261	59	313	0	ENST00000288368.4:c.2002G>T	p.Val668Phe	p.V668F	ENST00000288368	NM_024870.2	668	Gtt/Ttt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341740	8341740	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			233	142	422	0	ENST00000356435.5:c.4900C>A	p.Gln1634Lys	p.Q1634K	ENST00000356435		1634	Caa/Aaa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484260	8484260	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			243	114	384	0	ENST00000356435.5:c.3272G>T	p.Ser1091Ile	p.S1091I	ENST00000356435		1091	aGt/aTt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231032	98231032	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			211	347	374	0	ENST00000331920.6:c.2250+1G>T		p.X750_splice	ENST00000331920	NM_000264.3	750																																																																																
BTK	695	MSKCC	GRCh37	X	100614296	100614296	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058758-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			108	214	126	0	ENST00000308731.7:c.879A>T	p.Gln293His	p.Q293H	ENST00000308731	NM_000061.2	293	caA/caT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0057422-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			394	619	353	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
IGF2	3481	MSKCC	GRCh37	11	2161391	2161391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057422-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			561	207	539	1	ENST00000434045.2:c.136C>T	p.Arg46Cys	p.R46C	ENST00000434045	NM_001127598.1	46	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577514	7577516	+	inframe_deletion	In_Frame_Del	DEL	GTG	GTG	-			P-0057422-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			264	188	401	0	ENST00000269305.4:c.765_767del	p.Thr256del	p.T256del	ENST00000269305	NM_001126112.2	255	atCACa/ata																																																																															
NF1	4763	MSKCC	GRCh37	17	29679376	29679376	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057422-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			674	188	408	0	ENST00000358273.4:c.7559A>C	p.Lys2520Thr	p.K2520T	ENST00000358273	NM_001042492.2	2520	aAa/aCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630930	187630937	+	frameshift_variant	Frame_Shift_Del	DEL	AATGTTGG	AATGTTGG	-			P-0057422-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			340	577	524	0	ENST00000441802.2:c.45_52del	p.Gln16TrpfsTer4	p.Q16Wfs*4	ENST00000441802	NM_005245.3	15	ttCCAACATTtt/tttt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0057593-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			513	63	449	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																															
MGA	23269	MSKCC	GRCh37	15	41988856	41988856	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057593-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			503	64	471	0	ENST00000219905.7:c.1648C>T	p.Gln550Ter	p.Q550*	ENST00000219905	NM_001164273.1	550	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0057593-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			498	221	514	0	ENST00000275493.2:c.2303_2311dup	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220578	1220578	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0058563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	44	627	0	ENST00000326873.7:c.598-2A>T		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																																
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519971		P-0058563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			391	30	439	0	ENST00000347630.2:c.260A>C	p.Tyr87Ser	p.Y87S	ENST00000347630	NM_001007230.1	87	tAc/tCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0058563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			184	18	254	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RET	5979	MSKCC	GRCh37	10	43612160	43612161	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0058563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			486	43	533	0	ENST00000355710.3:c.2265_2266delinsTT	p.Ala756Ser	p.A756S	ENST00000355710	NM_020975.4	755	gtGGcc/gtTTcc																																																																															
APLNR	187	MSKCC	GRCh37	11	57004232	57004232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			610	37	717	0	ENST00000606794.1:c.247C>T	p.Pro83Ser	p.P83S	ENST00000606794	NM_005161.4	83	Ccc/Tcc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599943	10599944	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0058563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			523	60	571	1	ENST00000171111.5:c.1632_1633delinsTT	p.Trp544_Thr545delinsCysSer	p.W544_T545delinsCS	ENST00000171111	NM_203500.1	544	tgGAct/tgTTct																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874253	151874253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	17	368	0	ENST00000262189.6:c.8285C>T	p.Pro2762Leu	p.P2762L	ENST00000262189	NM_170606.2	2762	cCa/cTa																																																																															
ATRX	546	MSKCC	GRCh37	X	76845395	76845395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058563-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			116	21	149	0	ENST00000373344.5:c.6126G>T	p.Gln2042His	p.Q2042H	ENST00000373344	NM_000489.3	2042	caG/caT																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0058565-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			600	23	621	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0058566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			292	403	465	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112157627	112157628	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0058566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			93	59	260	0	ENST00000257430.4:c.1354_1355del	p.Val452SerfsTer7	p.V452Sfs*7	ENST00000257430	NM_000038.5	449	gcTGtg/gctg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022286	31022287	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A	rs1491418513		P-0058566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			921	1242	535	0	ENST00000375687.4:c.1772dup	p.Tyr591Ter	p.Y591*	ENST00000375687	NM_015338.5	591	tac/tAac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427193	49427196	+	frameshift_variant	Frame_Shift_Del	DEL	TGTC	TGTC	-			P-0058566-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1110	157	561	0	ENST00000301067.7:c.11292_11295del	p.Asn3766LysfsTer63	p.N3766Kfs*63	ENST00000301067	NM_003482.3	3764	caGACA/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0058567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			249	62	306	0	ENST00000256078.4:c.34_35delinsAT	p.Gly12Ile	p.G12I	ENST00000256078	NM_033360.2	12	GGt/ATt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066702	94066702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058567-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			371	27	534	0	ENST00000369303.4:c.1057C>T	p.Pro353Ser	p.P353S	ENST00000369303	NM_004440.3	353	Cct/Tct																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs879499034		P-0058580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			730	108	661	0	ENST00000250448.2:c.798C>A	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578664	7579565	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCACTAGCGAGCTAGAGAGAGTTGGCGTCTACACCTCAGGAGCTTTTCTTTTTTTTTTTTTTTTTTGAGATAGGGTCTTGCTCTGTCACTCAGGCTGGAGCACAGTGGTGTGATCACAGCTCACTGCAGCCTCCATCTCCTGGCCTCAAGTGATCTTCCCACCTCAGCCTCCTAAGTGGCTGGGACTATAGGTGTGCACCACCATGCCTGGCTAATTTTTTGTATTTTTTTGTAGAGACGAGGTTTCATCATGTTACCCAGGCTGGTCTTGAACTCCTGGGCTCAGGTGATCTGCCTGCCTTGGCCTCTTTGAGAGTGCTGGGATTGCAGGTGTGAGCCACCAAGCCTGGTCAGGAGCTTATTTTCAAAAGCCAAGGAATACACGTGGATGAAGAAAAAGAAAAGTTCTGCATCCCCAGGAGAGATGCTGAGGGTGTGATGGGATGGATAAAAGCCCAAATTCAAGGGGGGAATATTCAACTTTGGGACAGGAGTCAGAGATCACACATTAAGTGGGTAAACTATAAAAAAACACTGACAGGAAGCCAAAGGGTGAAGAGGAATCCCAAAGTTCCAAACAAAAGAAATGCAGGGGGATACGGCCAGGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAGAAGCCCAGACGGAAACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGGACAGAAGATGACAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTGCAGGGGCCACGGGGGGAGCAGCCTCTGGCATTCTGGGAGCTTCATCTGGACCTGGGTCTTCAGTGAACCATTGTTCAATATCGTCCGGGGACAGCATCAAATCAT	CCACTAGCGAGCTAGAGAGAGTTGGCGTCTACACCTCAGGAGCTTTTCTTTTTTTTTTTTTTTTTTGAGATAGGGTCTTGCTCTGTCACTCAGGCTGGAGCACAGTGGTGTGATCACAGCTCACTGCAGCCTCCATCTCCTGGCCTCAAGTGATCTTCCCACCTCAGCCTCCTAAGTGGCTGGGACTATAGGTGTGCACCACCATGCCTGGCTAATTTTTTGTATTTTTTTGTAGAGACGAGGTTTCATCATGTTACCCAGGCTGGTCTTGAACTCCTGGGCTCAGGTGATCTGCCTGCCTTGGCCTCTTTGAGAGTGCTGGGATTGCAGGTGTGAGCCACCAAGCCTGGTCAGGAGCTTATTTTCAAAAGCCAAGGAATACACGTGGATGAAGAAAAAGAAAAGTTCTGCATCCCCAGGAGAGATGCTGAGGGTGTGATGGGATGGATAAAAGCCCAAATTCAAGGGGGGAATATTCAACTTTGGGACAGGAGTCAGAGATCACACATTAAGTGGGTAAACTATAAAAAAACACTGACAGGAAGCCAAAGGGTGAAGAGGAATCCCAAAGTTCCAAACAAAAGAAATGCAGGGGGATACGGCCAGGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAGAAGCCCAGACGGAAACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGGACAGAAGATGACAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTGCAGGGGCCACGGGGGGAGCAGCCTCTGGCATTCTGGGAGCTTCATCTGGACCTGGGTCTTCAGTGAACCATTGTTCAATATCGTCCGGGGACAGCATCAAATCAT	-			P-0058580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	75	234	0	ENST00000269305.4:c.122_376-110del		p.X41_splice	ENST00000269305	NM_001126112.2	41																																																																																
BCL2L1	598	MSKCC	GRCh37	20	30309659	30309659	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			801	138	690	0	ENST00000307677.4:c.363G>T	p.Gln121His	p.Q121H	ENST00000307677	NM_138578.1	121	caG/caT																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24143164	24143167	+	frameshift_variant	Frame_Shift_Del	DEL	ACCC	ACCC	-			P-0058580-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			736	110	617	0	ENST00000263121.7:c.400_403del	p.Thr134CysfsTer8	p.T134Cfs*8	ENST00000263121	NM_003073.3	132	gtACCC/gt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0058586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	78	295	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs985033810		P-0058586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	84	529	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56434964	56434964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			806	53	834	0	ENST00000407977.2:c.2173G>T	p.Val725Leu	p.V725L	ENST00000407977		725	Gtg/Ttg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508416	106508416	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058586-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			673	36	1104	0	ENST00000359195.3:c.410T>C	p.Leu137Pro	p.L137P	ENST00000359195	NM_002649.2	137	cTg/cCg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645693	12645693	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397516827		P-0049179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			636	161	549	0	ENST00000251849.4:c.776C>T	p.Ser259Phe	p.S259F	ENST00000251849	NM_002880.3	259	tCc/tTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220505	1220505	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs886039554		P-0049179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			572	178	816	0	ENST00000326873.7:c.597+1G>T		p.X199_splice	ENST00000326873	NM_000455.4	199																																																																																
BLM	641	MSKCC	GRCh37	15	91333968	91333968	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			584	145	534	0	ENST00000355112.3:c.2913G>C	p.Glu971Asp	p.E971D	ENST00000355112	NM_000057.2	971	gaG/gaC																																																																															
SLFN11	91607	MSKCC	GRCh37	17	33689963	33689963	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			656	173	598	0	ENST00000394566.1:c.864A>C	p.Gln288His	p.Q288H	ENST00000394566	NM_001104587.1	288	caA/caC																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391215	89391215	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			599	123	523	0	ENST00000336596.2:c.1282del	p.Val428SerfsTer14	p.V428Sfs*14	ENST00000336596	NM_005233.5	427	gcG/gc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117665327	117665327	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			537	107	507	0	ENST00000368508.3:c.4420A>G	p.Asn1474Asp	p.N1474D	ENST00000368508	NM_002944.2	1474	Aac/Gac																																																																															
ARAF	369	MSKCC	GRCh37	X	47426532	47426532	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0049179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			826	154	860	1	ENST00000377045.4:c.873+2T>A		p.X291_splice	ENST00000377045	NM_001654.4	291																																																																																
AMER1	139285	MSKCC	GRCh37	X	63410219	63410219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049179-T02-IM7									Unknown	SOMATIC				MSK-IMPACT			632	121	757	0	ENST00000330258.3:c.2948C>T	p.Pro983Leu	p.P983L	ENST00000330258	NM_152424.3	983	cCt/cTt																																																																															
LYN	4067	MSKCC	GRCh37	8	56912055	56912055	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056464-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			633	62	401	0	ENST00000519728.1:c.1283C>G	p.Ser428Cys	p.S428C	ENST00000519728	NM_002350.3	428	tCc/tGc																																																																															
BTK	695	MSKCC	GRCh37	X	100617631	100617631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056464-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			617	46	376	0	ENST00000308731.7:c.438C>A	p.Phe146Leu	p.F146L	ENST00000308731	NM_000061.2	146	ttC/ttA																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426776	121426776	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150513055		P-0058455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	47	553	1	ENST00000257555.6:c.467C>T	p.Thr156Met	p.T156M	ENST00000257555		156	aCg/aTg																																																																															
CBL	867	MSKCC	GRCh37	11	119170301	119170301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	41	205	0	ENST00000264033.4:c.2531G>A	p.Ser844Asn	p.S844N	ENST00000264033	NM_005188.3	844	aGt/aAt																																																																															
RAB35	11021	MSKCC	GRCh37	12	120541651	120541651	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752816549		P-0058455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	65	387	1	ENST00000229340.5:c.206G>A	p.Arg69His	p.R69H	ENST00000229340	NM_006861.6	69	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0058457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	372	615	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	153	570	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0058457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	104	398	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
POLE	5426	MSKCC	GRCh37	12	133226349	133226349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	201	782	0	ENST00000320574.5:c.3709G>A	p.Glu1237Lys	p.E1237K	ENST00000320574	NM_006231.2	1237	Gag/Aag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478833	56478833	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	168	743	0	ENST00000267101.3:c.289C>G	p.Leu97Val	p.L97V	ENST00000267101	NM_001982.3	97	Cta/Gta																																																																															
FLT3	2322	MSKCC	GRCh37	13	28644659	28644659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	121	507	0	ENST00000241453.7:c.134C>T	p.Ser45Leu	p.S45L	ENST00000241453	NM_004119.2	45	tCa/tTa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435954	56435954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	124	483	0	ENST00000407977.2:c.1183C>T	p.His395Tyr	p.H395Y	ENST00000407977		395	Cat/Tat																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910359	29910359	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	199	941	0	ENST00000376809.5:c.29T>C	p.Leu10Pro	p.L10P	ENST00000376809	NM_002116.7	10	cTc/cCc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419911	152419911	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	156	561	0	ENST00000206249.3:c.1598T>A	p.Val533Glu	p.V533E	ENST00000206249	NM_000125.3	533	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0058474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	256	750	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0058474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			686	196	572	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
MED12	9968	MSKCC	GRCh37	X	70356748	70356748	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			311	127	357	0	ENST00000374080.3:c.5420G>T	p.Gly1807Val	p.G1807V	ENST00000374080		1807	gGt/gTt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120484167	120484167	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			577	119	570	0	ENST00000256646.2:c.2963T>A	p.Ile988Asn	p.I988N	ENST00000256646	NM_024408.3	988	aTc/aAc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526840	31526840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			641	200	681	0	ENST00000344624.3:c.200C>T	p.Pro67Leu	p.P67L	ENST00000344624		67	cCa/cTa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94124470	94124470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058474-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			270	47	357	0	ENST00000369303.4:c.113C>A	p.Ser38Tyr	p.S38Y	ENST00000369303	NM_004440.3	38	tCt/tAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0058475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			727	67	517	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
CALR	811	MSKCC	GRCh37	19	13051678	13051678	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1026947469		P-0058475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			1066	100	500	0	ENST00000316448.5:c.937G>A	p.Val313Met	p.V313M	ENST00000316448	NM_004343.3	313	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0058475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			354	70	268	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970988	21970989	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0058475-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			874	137	616	0	ENST00000304494.5:c.369_370insA	p.Arg124ThrfsTer18	p.R124Tfs*18	ENST00000304494	NM_000077.4	123	-/A																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55151625	55151625	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs571523023		P-0058476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	117	390	0	ENST00000257290.5:c.2411G>A	p.Arg804Gln	p.R804Q	ENST00000257290	NM_006206.4	804	cGa/cAa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115944	8115959	+	frameshift_variant	Frame_Shift_Del	DEL	TGGACCACACCACCCC	TGGACCACACCACCCC	-			P-0058476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			601	452	644	0	ENST00000346208.3:c.1291_1306del	p.Gly431ProfsTer39	p.G431Pfs*39	ENST00000346208		430	ttTGGACCACACCACCCC/tt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720663	89720665	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0058476-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			36	22	67	0	ENST00000371953.3:c.814_816del	p.His272del	p.H272del	ENST00000371953	NM_000314.4	272	CAC/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578518	7578518	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs28934875		P-0058477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			650	105	522	0	ENST00000269305.4:c.412G>C	p.Ala138Pro	p.A138P	ENST00000269305	NM_001126112.2	138	Gcc/Ccc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098962	178098962	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			465	16	427	0	ENST00000397062.3:c.83T>C	p.Ile28Thr	p.I28T	ENST00000397062	NM_006164.4	28	aTa/aCa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562463	21562463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			333	42	534	1	ENST00000382592.4:c.1456G>A	p.Ala486Thr	p.A486T	ENST00000382592	NM_014572.2	486	Gcc/Acc																																																																															
PARP1	142	MSKCC	GRCh37	1	226590062	226590062	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1360722722		P-0058477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			690	55	543	0	ENST00000366794.5:c.139A>G	p.Lys47Glu	p.K47E	ENST00000366794	NM_001618.3	47	Aaa/Gaa																																																																															
PGR	5241	MSKCC	GRCh37	11	100999183	100999183	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs567928186		P-0058477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			508	40	658	0	ENST00000325455.5:c.619G>C	p.Gly207Arg	p.G207R	ENST00000325455	NM_001202474.3	207	Ggg/Cgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29665722	29665722	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0058477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			300	40	269	0	ENST00000358273.4:c.6820G>A	p.Ala2274Thr	p.A2274T	ENST00000358273	NM_001042492.2	2274	Gca/Aca																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158549	26158549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			562	39	535	0	ENST00000289316.2:c.152C>T	p.Pro51Leu	p.P51L	ENST00000289316	NM_138720.2	51	cCc/cTc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157510895	157510895	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			605	50	511	0	ENST00000346085.5:c.3670A>G	p.Thr1224Ala	p.T1224A	ENST00000346085	NM_020732.3	1224	Act/Gct																																																																															
ATRX	546	MSKCC	GRCh37	X	76907645	76907645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058477-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			557	43	426	0	ENST00000373344.5:c.4516C>T	p.Arg1506Cys	p.R1506C	ENST00000373344	NM_000489.3	1506	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0058482-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	488	570	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971115	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTCGGGTGAGAGTGGCG	GGGTCGGGTGAGAGTGGCG	-	rs730881674		P-0058482-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			698	318	660	0	ENST00000304494.5:c.225_243del	p.Ala76CysfsTer64	p.A76Cfs*64	ENST00000304494	NM_000077.4	75	ccCGCCACTCTCACCCGACCC/cc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094426	27094426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058482-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			783	244	578	0	ENST00000324856.7:c.3134G>A	p.Gly1045Asp	p.G1045D	ENST00000324856	NM_006015.4	1045	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0058482-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			198	802	302	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437518	52437518	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779877855		P-0058482-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			473	261	591	0	ENST00000460680.1:c.1643G>A	p.Arg548His	p.R548H	ENST00000460680	NM_004656.3	548	cGt/cAt																																																																															
CCNE1	898	MSKCC	GRCh37	19	30303684	30303684	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0058517-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			417	30	703	0	ENST00000262643.3:c.111+1G>T		p.X37_splice	ENST00000262643	NM_001238.2	37																																																																																
HLA-A	3105	MSKCC	GRCh37	6	29912375	29912376	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0058517-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			448	69	555	0	ENST00000376809.5:c.996dup	p.Arg333GlufsTer7	p.R333Efs*7	ENST00000376809	NM_002116.7	332	tgg/tGgg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0058519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			259	71	432	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0058519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			782	191	816	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs193920894		P-0058519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			582	169	615	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829887	72829887	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			721	162	669	0	ENST00000268489.5:c.6694del	p.Glu2232AsnfsTer23	p.E2232Nfs*23	ENST00000268489	NM_006885.3	2232	Gaa/aa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949998	44949998	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058519-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			100	86	256	0	ENST00000377967.4:c.3767A>G	p.Tyr1256Cys	p.Y1256C	ENST00000377967	NM_021140.2	1256	tAc/tGc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0058527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	22	316	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061317	38061317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	63	793	0	ENST00000250448.2:c.672C>A	p.Phe224Leu	p.F224L	ENST00000250448	NM_004496.3	224	ttC/ttA																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198268412	198268412	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	14	339	0	ENST00000335508.6:c.1616T>G	p.Leu539Arg	p.L539R	ENST00000335508	NM_012433.2	539	cTg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398280	25398281	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0058529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	97	410	0	ENST00000256078.4:c.38_39delinsAA	p.Gly13Glu	p.G13E	ENST00000256078	NM_033360.2	13	gGC/gAA																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101904959	101904959	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0058529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	167	362	0	ENST00000374994.4:c.948del	p.His317ThrfsTer18	p.H317Tfs*18	ENST00000374994	NM_004612.2	316	cTt/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0058532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	245	935	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0058532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	310	376	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591140	67591145	+	inframe_deletion	In_Frame_Del	DEL	ACCAAT	ACCAAT	-	rs751582616		P-0058532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	65	247	0	ENST00000274335.5:c.1735_1740del	p.Gln579_Tyr580del	p.Q579_Y580del	ENST00000274335		578	gACCAATac/gac																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209358	98209358	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1297685477		P-0058532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	194	950	0	ENST00000331920.6:c.4180C>T	p.Arg1394Ter	p.R1394*	ENST00000331920	NM_000264.3	1394	Cga/Tga																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918342	44918342	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	103	425	1	ENST00000377967.4:c.967T>A	p.Ser323Thr	p.S323T	ENST00000377967	NM_021140.2	323	Tca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112175606	112175609	+	frameshift_variant	Frame_Shift_Ins	INS	CCTC	CCTC	GAAGTAAAA			P-0058532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	151	265	0	ENST00000257430.4:c.4315_4318delinsGAAGTAAAA	p.Pro1439GlufsTer36	p.P1439Efs*36	ENST00000257430	NM_000038.5	1439	CCTCca/GAAGTAAAAca																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			296	42	461	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			398	47	800	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			269	23	491	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165213	47165213	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			242	34	388	0	ENST00000409792.3:c.913del	p.Thr305GlnfsTer35	p.T305Qfs*35	ENST00000409792	NM_014159.6	305	Aca/ca																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			374	49	741	3	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
APC	324	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			385	40	733	0	ENST00000257430.4:c.4364del	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438317	110438322	+	inframe_deletion	In_Frame_Del	DEL	GTTGTT	GTTGTT	-	rs1269430357		P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			383	39	637	3	ENST00000375856.3:c.79_84del	p.Asn27_Asn28del	p.N27_N28del	ENST00000375856	NM_003749.2	27	AACAAC/-																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs794727798		P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	63	803	0	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			323	28	588	7	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ATR	545	MSKCC	GRCh37	3	142261555	142261555	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	27	351	1	ENST00000350721.4:c.3402del	p.Phe1134LeufsTer6	p.F1134Lfs*6	ENST00000350721	NM_001184.3	1134	ttT/tt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64132896	64132896	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			440	49	926	3	ENST00000334205.4:c.1034del	p.Pro345LeufsTer30	p.P345Lfs*30	ENST00000334205	NM_003942.2	344	Ccc/cc																																																																															
CASP8	841	MSKCC	GRCh37	2	202139625	202139626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			402	61	595	0	ENST00000358485.4:c.790dup	p.Val264GlyfsTer13	p.V264Gfs*13	ENST00000358485	NM_001080125.1	262	-/G																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871053	12871053	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			366	57	881	1	ENST00000228872.4:c.285del	p.Gly97ValfsTer22	p.G97Vfs*22	ENST00000228872	NM_004064.3	94	Ccc/cc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354393	354393	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1488869543		P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			388	60	669	0	ENST00000262320.3:c.1165G>A	p.Ala389Thr	p.A389T	ENST00000262320	NM_003502.3	389	Gcg/Acg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026290	48026290	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147737737		P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			343	44	655	0	ENST00000234420.5:c.1168G>A	p.Asp390Asn	p.D390N	ENST00000234420	NM_000179.2	390	Gat/Aat																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			214	32	409	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110129	8110130	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs745673717		P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			427	70	803	2	ENST00000585124.1:c.475dup	p.Arg159ProfsTer15	p.R159Pfs*15	ENST00000585124	NM_004217.3	159	cgc/cCgc																																																																															
IRF4	3662	MSKCC	GRCh37	6	394992	394992	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			418	74	743	0	ENST00000380956.4:c.388G>T	p.Glu130Ter	p.E130*	ENST00000380956	NM_001195286.1	130	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425823	49425824	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs757932721		P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			519	43	965	0	ENST00000301067.7:c.12662_12664dup	p.Gln4221dup	p.Q4221dup	ENST00000301067	NM_003482.3	4221	cta/cAGCta																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111736	56111737	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			205	16	681	0	ENST00000399503.3:c.340dup	p.His114ProfsTer50	p.H114Pfs*50	ENST00000399503	NM_005921.1	112	-/C																																																																															
FLT4	2324	MSKCC	GRCh37	5	180040062	180040062	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376188634		P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			408	62	900	1	ENST00000261937.6:c.3380G>A	p.Arg1127Gln	p.R1127Q	ENST00000261937	NM_182925.4	1127	cGg/cAg																																																																															
LMO1	4004	MSKCC	GRCh37	11	8252007	8252007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			484	72	934	0	ENST00000335790.3:c.70T>C	p.Cys24Arg	p.C24R	ENST00000335790	NM_002315.2	24	Tgt/Cgt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214059	36214059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			558	87	902	0	ENST00000222270.7:c.2885G>A	p.Arg962His	p.R962H	ENST00000222270	NM_014727.1	962	cGc/cAc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781500	9781500	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			356	34	651	0	ENST00000377346.4:c.1812-2A>G		p.X604_splice	ENST00000377346	NM_005026.3	604																																																																																
MTOR	2475	MSKCC	GRCh37	1	11204803	11204803	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			363	44	661	0	ENST00000361445.4:c.4774del	p.Ser1592LeufsTer39	p.S1592Lfs*39	ENST00000361445	NM_004958.3	1592	Tct/ct																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261791	16261791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			450	74	918	0	ENST00000375759.3:c.9056C>T	p.Ala3019Val	p.A3019V	ENST00000375759	NM_015001.2	3019	gCa/gTa																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598919	28598919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			477	73	981	0	ENST00000253063.3:c.479G>A	p.Ser160Asn	p.S160N	ENST00000253063	NM_031459.4	160	aGc/aAc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246518349	246518349	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			309	37	465	0	ENST00000388985.4:c.212G>C	p.Cys71Ser	p.C71S	ENST00000388985		71	tGt/tCt																																																																															
RET	5979	MSKCC	GRCh37	10	43609972	43609972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			491	85	1028	0	ENST00000355710.3:c.1924G>A	p.Val642Ile	p.V642I	ENST00000355710	NM_020975.4	642	Gtc/Atc																																																																															
POLE	5426	MSKCC	GRCh37	12	133241978	133241978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			432	50	722	0	ENST00000320574.5:c.2378G>A	p.Arg793His	p.R793H	ENST00000320574	NM_006231.2	793	cGc/cAc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26828863	26828863	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			381	65	775	0	ENST00000381527.3:c.85C>T	p.Arg29Ter	p.R29*	ENST00000381527	NM_001260.1	29	Cga/Tga																																																																															
FOXF1	2294	MSKCC	GRCh37	16	86546539	86546539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			399	68	895	0	ENST00000262426.4:c.988C>T	p.Arg330Trp	p.R330W	ENST00000262426	NM_001451.2	330	Cgg/Tgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29676245	29676245	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			285	21	431	0	ENST00000358273.4:c.7297A>G	p.Thr2433Ala	p.T2433A	ENST00000358273	NM_001042492.2	2433	Aca/Gca																																																																															
YES1	7525	MSKCC	GRCh37	18	724581	724581	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750831029		P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			208	30	381	0	ENST00000314574.4:c.1475C>T	p.Pro492Leu	p.P492L	ENST00000314574	NM_005433.3	492	cCg/cTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349642	15349642	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			426	61	852	0	ENST00000263377.2:c.3932A>G	p.Gln1311Arg	p.Q1311R	ENST00000263377	NM_058243.2	1311	cAg/cGg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566845	212566845	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			346	43	677	0	ENST00000342788.4:c.1336C>T	p.Gln446Ter	p.Q446*	ENST00000342788	NM_005235.2	446	Cag/Tag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230914	66230914	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			196	25	432	0	ENST00000273854.3:c.2057T>C	p.Phe686Ser	p.F686S	ENST00000273854	NM_004439.5	686	tTt/tCt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295959	1295959	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			502	67	1126	0				ENST00000310581	NM_198253.2																																																																																	
APC	324	MSKCC	GRCh37	5	112179249	112179252	+	frameshift_variant	Frame_Shift_Del	DEL	AAAC	AAAC	-			P-0058487-T01-IM7									Unknown	SOMATIC				MSK-IMPACT			294	29	541	0	ENST00000257430.4:c.7959_7962del	p.Thr2654ArgfsTer5	p.T2654Rfs*5	ENST00000257430	NM_000038.5	2653	aAAACa/aa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	138	798	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	87	373	0	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	121	470	0	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	69	328	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	85	807	5	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	23	232	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	134	528	0	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8733795	8733795	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138127948		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	113	552	0	ENST00000356435.5:c.49C>T	p.Arg17Cys	p.R17C	ENST00000356435		17	Cgc/Tgc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	69	441	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	63	340	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123246935	123246935	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113014479		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	57	402	0	ENST00000358487.5:c.1990C>T	p.Arg664Trp	p.R664W	ENST00000358487	NM_000141.4	664	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782596		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	22	807	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108115727	108115727	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747727055		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	21	154	0	ENST00000278616.4:c.875C>T	p.Pro292Leu	p.P292L	ENST00000278616	NM_000051.3	292	cCg/cTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	181	475	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
SMO	6608	MSKCC	GRCh37	7	128829040	128829042	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-	rs772132544		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	10	68	0	ENST00000249373.3:c.67_69del	p.Leu23del	p.L23del	ENST00000249373	NM_005631.4	16	ggGCTg/ggg																																																																															
YES1	7525	MSKCC	GRCh37	18	736907	736907	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs986350587		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	34	453	0	ENST00000314574.4:c.1192C>T	p.Arg398Trp	p.R398W	ENST00000314574	NM_005433.3	398	Cgg/Tgg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	93	521	0	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139802567	139802567	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138185376		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	165	990	0	ENST00000247668.2:c.412G>A	p.Ala138Thr	p.A138T	ENST00000247668	NM_021138.3	138	Gcg/Acg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87482169	87482169	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201028496		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	62	586	0	ENST00000277120.3:c.1456G>A	p.Val486Ile	p.V486I	ENST00000277120		486	Gtt/Att																																																																															
JAK2	3717	MSKCC	GRCh37	9	5077503	5077503	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	45	186	0	ENST00000381652.3:c.1919del	p.Lys640ArgfsTer6	p.K640Rfs*6	ENST00000381652	NM_004972.3	639	Aaa/aa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403254	213403254	+	frameshift_variant,start_lost,start_retained_variant	Frame_Shift_Del	DEL	T	T	-			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	99	486	0	ENST00000342788.4:c.1del	p.Met1?	p.M1?	ENST00000342788	NM_005235.2	1	Atg/tg																																																																															
CD79B	974	MSKCC	GRCh37	17	62007580	62007580	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778771873		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	154	819	0	ENST00000392795.3:c.287G>A	p.Arg96His	p.R96H	ENST00000392795	NM_001039933.1	96	cGc/cAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508470	106508470	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1463222028		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	54	420	0	ENST00000359195.3:c.464C>T	p.Thr155Met	p.T155M	ENST00000359195	NM_002649.2	155	aCg/aTg																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2636803	2636803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	151	731	0	ENST00000342085.4:c.1252G>A	p.Asp418Asn	p.D418N	ENST00000342085	NM_002613.4	418	Gat/Aat																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120461100	120461100	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs312262797		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	97	493	1	ENST00000256646.2:c.5858G>A	p.Arg1953His	p.R1953H	ENST00000256646	NM_024408.3	1953	cGc/cAc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25497937	25497937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	128	826	0	ENST00000264709.3:c.512G>A	p.Arg171Gln	p.R171Q	ENST00000264709	NM_175629.2	171	cGg/cAg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911445	134911445	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs571583026		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	88	495	0	ENST00000398015.3:c.1910G>A	p.Arg637His	p.R637H	ENST00000398015	NM_004441.4	637	cGt/cAt																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127915852	127915852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	80	465	0	ENST00000373547.4:c.629G>A	p.Arg210Gln	p.R210Q	ENST00000373547	NM_002721.4	210	cGa/cAa																																																																															
SMO	6608	MSKCC	GRCh37	7	128849225	128849225	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756828715		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	110	631	0	ENST00000249373.3:c.1453C>T	p.Arg485Trp	p.R485W	ENST00000249373	NM_005631.4	485	Cgg/Tgg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46252683	46252683	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372533478		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	34	237	0	ENST00000371998.3:c.112C>T	p.Arg38Trp	p.R38W	ENST00000371998		38	Cgg/Tgg																																																																															
FYN	2534	MSKCC	GRCh37	6	112035608	112035608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	61	443	1	ENST00000368678.4:c.286C>T	p.Arg96Trp	p.R96W	ENST00000368678		96	Cgg/Tgg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120851	94120851	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs889062730		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	62	453	0	ENST00000369303.4:c.200C>T	p.Pro67Leu	p.P67L	ENST00000369303	NM_004440.3	67	cCg/cTg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1620979	1620979	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1329397192		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1119	106	1066	5	ENST00000344749.5:c.1081del	p.Gln361ArgfsTer33	p.Q361Rfs*33	ENST00000344749	NM_001136139.2	361	Cag/ag																																																																															
BLM	641	MSKCC	GRCh37	15	91352442	91352442	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760554566		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	59	346	0	ENST00000355112.3:c.3827C>T	p.Ala1276Val	p.A1276V	ENST00000355112	NM_000057.2	1276	gCg/gTg																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873409	136873409	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs923351521		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	58	370	0	ENST00000241393.3:c.89G>A	p.Arg30His	p.R30H	ENST00000241393	NM_003467.2	30	cGt/cAt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962853	2962854	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	104	926	1	ENST00000396946.4:c.2054dup	p.Asn686GlnfsTer23	p.N686Qfs*23	ENST00000396946	NM_032415.4	685	ggc/ggGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101352	27101352	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	124	872	0	ENST00000324856.7:c.4634G>A	p.Trp1545Ter	p.W1545*	ENST00000324856	NM_006015.4	1545	tGg/tAg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137038	64137038	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1372636808		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	115	954	1	ENST00000334205.4:c.1549G>A	p.Val517Met	p.V517M	ENST00000334205	NM_003942.2	517	Gtg/Atg																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074276	8074276	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	112	549	0	ENST00000377482.5:c.383del	p.Pro128LeufsTer3	p.P128Lfs*3	ENST00000377482	NM_018948.3	128	cCt/ct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214145	36214145	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	125	935	1	ENST00000222270.7:c.2975del	p.Gly992AlafsTer17	p.G992Afs*17	ENST00000222270	NM_014727.1	991	Ggg/gg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257932	16257932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	100	632	0	ENST00000375759.3:c.5197G>A	p.Ala1733Thr	p.A1733T	ENST00000375759	NM_015001.2	1733	Gcc/Acc																																																																															
ATM	472	MSKCC	GRCh37	11	108117750	108117750	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	30	216	0	ENST00000278616.4:c.961A>G	p.Asn321Asp	p.N321D	ENST00000278616	NM_000051.3	321	Aat/Gat																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125523717	125523717	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	26	144	0	ENST00000428830.2:c.1310T>C	p.Ile437Thr	p.I437T	ENST00000428830	NM_001114121.2	437	aTa/aCa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109874	115109874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	77	896	0	ENST00000257566.3:c.2004del	p.Leu670TrpfsTer219	p.L670Wfs*219	ENST00000257566	NM_016569.3	668	ggG/gg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40865370	40865370	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1287970047		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	150	758	2	ENST00000428826.2:c.1061G>A	p.Arg354His	p.R354H	ENST00000428826		354	cGc/cAc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031592	11031592	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	99	1062	2	ENST00000327064.4:c.1507T>C	p.Tyr503His	p.Y503H	ENST00000327064	NM_199141.1	503	Tac/Cac																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349771	15349771	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781555424		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	135	955	0	ENST00000263377.2:c.3803C>T	p.Ala1268Val	p.A1268V	ENST00000263377	NM_058243.2	1268	gCg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211576	36211576	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	58	456	0	ENST00000222270.7:c.1327T>C	p.Ser443Pro	p.S443P	ENST00000222270	NM_014727.1	443	Tcc/Ccc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905993	50905993	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs980303681		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	167	1017	2	ENST00000440232.2:c.965G>A	p.Arg322His	p.R322H	ENST00000440232	NM_002691.3	322	cGc/cAc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49924778	49924778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	146	1006	2	ENST00000296474.3:c.4165C>T	p.Arg1389Trp	p.R1389W	ENST00000296474	NM_002447.2	1389	Cgg/Tgg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52713658	52713658	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	68	611	0	ENST00000394830.3:c.70C>A	p.His24Asn	p.H24N	ENST00000394830	NM_018313.4	24	Cat/Aat																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155181	55155181	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	78	599	0	ENST00000257290.5:c.2780A>T	p.Glu927Val	p.E927V	ENST00000257290	NM_006206.4	927	gAg/gTg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200059	138200059	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775952412		P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	100	605	1	ENST00000237289.4:c.1477G>A	p.Gly493Arg	p.G493R	ENST00000237289	NM_001270507.1	493	Gga/Aga																																																																															
HGF	3082	MSKCC	GRCh37	7	81355302	81355302	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	73	302	1	ENST00000222390.5:c.1072G>T	p.Asp358Tyr	p.D358Y	ENST00000222390	NM_000601.4	358	Gat/Tat																																																																															
SMO	6608	MSKCC	GRCh37	7	128852162	128852162	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	92	1077	0	ENST00000249373.3:c.2234A>G	p.Gln745Arg	p.Q745R	ENST00000249373	NM_005631.4	745	cAg/cGg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141561474	141561474	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	91	782	0	ENST00000220592.5:c.1331del	p.Thr444ArgfsTer24	p.T444Rfs*24	ENST00000220592	NM_012154.3	444	aCg/ag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396814	139396814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	146	894	0	ENST00000277541.6:c.5294G>A	p.Gly1765Asp	p.G1765D	ENST00000277541	NM_017617.3	1765	gGc/gAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274911	41274911	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0058381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	18	352	0	ENST00000349496.5:c.1161T>G	p.Asn387Lys	p.N387K	ENST00000349496	NM_001904.3	387	aaT/aaG																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs80338963		P-0058381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	14	388	0	ENST00000342988.3:c.1081C>A	p.Arg361Ser	p.R361S	ENST00000342988	NM_005359.5	361	Cgc/Agc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527822	103527822	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs768440346		P-0058381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	11	303	0	ENST00000355739.4:c.3130G>T	p.Glu1044Ter	p.E1044*	ENST00000355739	NM_000123.3	1044	Gaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108186796	108186796	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	18	401	1	ENST00000278616.4:c.6154G>T	p.Glu2052Ter	p.E2052*	ENST00000278616	NM_000051.3	2052	Gaa/Taa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959067	2959067	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376539147		P-0058381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	102	708	0	ENST00000396946.4:c.2449G>A	p.Ala817Thr	p.A817T	ENST00000396946	NM_032415.4	817	Gcg/Acg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720676	89720676	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	25	337	0	ENST00000371953.3:c.827A>T	p.Asn276Ile	p.N276I	ENST00000371953	NM_000314.4	276	aAt/aTt																																																																															
WT1	7490	MSKCC	GRCh37	11	32413574	32413574	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0058381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	25	400	0	ENST00000332351.3:c.1376A>C	p.Lys459Thr	p.K459T	ENST00000332351	NM_024426.4	459	aAg/aCg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858001	9858001	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	26	571	0	ENST00000330684.3:c.3400C>T	p.Gln1134Ter	p.Q1134*	ENST00000330684	NM_001134407.1	1134	Cag/Tag																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30253775	30253775	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	212	624	0	ENST00000307677.4:c.679G>T	p.Gly227Cys	p.G227C	ENST00000307677	NM_138578.1	227	Ggc/Tgc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40469240	40469240	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs747667389		P-0058384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	189	315	0	ENST00000264657.5:c.2104G>A	p.Ala702Thr	p.A702T	ENST00000264657	NM_139276.2	702	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7576893	7576893	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	471	779	1	ENST00000269305.4:c.953del	p.Pro318GlnfsTer27	p.P318Qfs*27	ENST00000269305	NM_001126112.2	318	cCa/ca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27102181	27102187	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTTCA	ACCTTCA	-			P-0058406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	74	470	0	ENST00000324856.7:c.5111_5117del	p.Phe1704SerfsTer8	p.F1704Sfs*8	ENST00000324856	NM_006015.4	1703	ACCTTCAac/ac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1422891742		P-0058406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	213	575	0	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0058406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	337	881	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2214480	2214480	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1285640382		P-0058406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	604	877	1	ENST00000398665.3:c.1808G>A	p.Arg603His	p.R603H	ENST00000398665	NM_032482.2	603	cGc/cAc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2223485	2223485	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0058406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	58	391	0	ENST00000398665.3:c.3596G>A	p.Arg1199Gln	p.R1199Q	ENST00000398665	NM_032482.2	1199	cGa/cAa																																																																															
ALK	238	MSKCC	GRCh37	2	29445424	29445424	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762571775		P-0058406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	139	812	3	ENST00000389048.3:c.3409G>A	p.Gly1137Arg	p.G1137R	ENST00000389048	NM_004304.4	1137	Gga/Aga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212570063	212570063	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746784831		P-0058406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	28	477	0	ENST00000342788.4:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000342788	NM_005235.2	393	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112162918	112162919	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0058406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	45	385	0	ENST00000257430.4:c.1522_1523del	p.Leu508AspfsTer28	p.L508Dfs*28	ENST00000257430	NM_000038.5	508	TTg/g																																																																															
APC	324	MSKCC	GRCh37	5	112175353	112175366	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTTCAGGAGCGA	TTCTTCAGGAGCGA	-			P-0058406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	43	313	0	ENST00000257430.4:c.4062_4075del	p.Phe1354LeufsTer16	p.F1354Lfs*16	ENST00000257430	NM_000038.5	1354	ttTTCTTCAGGAGCGAaa/ttaa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131893080	131893080	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	69	444	0	ENST00000265335.6:c.64A>G	p.Lys22Glu	p.K22E	ENST00000265335		22	Aag/Gag																																																																															
RARA	5914	MSKCC	GRCh37	17	38487554	38487554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	195	688	1	ENST00000254066.5:c.89del	p.Pro30LeufsTer12	p.P30Lfs*12	ENST00000254066	NM_000964.3	28	ttC/tt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	148	430	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	135	573	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523009	25523009	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	200	826	3	ENST00000264709.3:c.176del	p.Pro59ArgfsTer13	p.P59Rfs*13	ENST00000264709	NM_175629.2	59	cCg/cg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	240	603	4	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755670	57755670	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	210	764	2	ENST00000274289.3:c.117del	p.Glu40ArgfsTer60	p.E40Rfs*60	ENST00000274289	NM_006622.3	39	ccC/cc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	245	771	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	151	721	4	ENST00000331920.6:c.3921del	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	118	352	5	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762108866		P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	109	498	6	ENST00000268489.5:c.10215dup	p.Gly3406ArgfsTer25	p.G3406Rfs*25	ENST00000268489	NM_006885.3	3405	-/C																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	206	543	1	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076932	41076932	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	185	544	0	ENST00000373198.4:c.1488del	p.Phe498LeufsTer103	p.F498Lfs*103	ENST00000373198	NM_133170.3	496	ggG/gg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066648	94066648	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371089003		P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	46	480	0	ENST00000369303.4:c.1111C>T	p.Arg371Trp	p.R371W	ENST00000369303	NM_004440.3	371	Cgg/Tgg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	210	487	7	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480010	50480010	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	226	634	0	ENST00000394963.4:c.249del	p.Asn84ThrfsTer79	p.N84Tfs*79	ENST00000394963	NM_003076.4	82	Ggg/gg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130337	11130337	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs281875226		P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	222	714	2	ENST00000358026.2:c.2576C>T	p.Thr859Met	p.T859M	ENST00000358026	NM_001128849.1	859	aCg/aTg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	198	763	8	ENST00000382891.5:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382891	NM_133335.3	1341	Ccc/cc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543825	212543825	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770003740		P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	97	408	0	ENST00000342788.4:c.1574G>A	p.Arg525His	p.R525H	ENST00000342788	NM_005235.2	525	cGc/cAc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339110	65339111	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	104	393	2	ENST00000342505.4:c.425dup	p.Ile143AspfsTer9	p.I143Dfs*9	ENST00000342505	NM_002227.2	142	aag/aaAg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323362	31323363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	76	390	0	ENST00000412585.2:c.626dup	p.Thr211AspfsTer10	p.T211Dfs*10	ENST00000412585	NM_005514.6	209	cca/ccCa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	224	839	9	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
RNF43	54894	MSKCC	GRCh37	17	56448296	56448297	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	198	682	0	ENST00000407977.2:c.350_351insA	p.Cys119LeufsTer6	p.C119Lfs*6	ENST00000407977		117	cgc/cgAc																																																																															
CBL	867	MSKCC	GRCh37	11	119077131	119077131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	43	490	2	ENST00000264033.4:c.4G>A	p.Ala2Thr	p.A2T	ENST00000264033	NM_005188.3	2	Gcc/Acc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523271	9523271	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775109543		P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	169	540	0	ENST00000353224.5:c.1966C>T	p.Arg656Trp	p.R656W	ENST00000353224	NM_177990.2	656	Cgg/Tgg																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589716	69589716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	16	139	2	ENST00000168712.1:c.137G>A	p.Arg46His	p.R46H	ENST00000168712	NM_002007.2	46	cGc/cAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879706	37879706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	179	555	0	ENST00000269571.5:c.2081C>T	p.Thr694Met	p.T694M	ENST00000269571		694	aCg/aTg																																																																															
INHA	3623	MSKCC	GRCh37	2	220437222	220437223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1286117855		P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	212	884	1	ENST00000243786.2:c.132dup	p.Ala45ArgfsTer29	p.A45Rfs*29	ENST00000243786	NM_002191.3	42	-/C																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970951	21970951	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	237	710	2	ENST00000304494.5:c.407del	p.Gly136AlafsTer10	p.G136Afs*10	ENST00000304494	NM_000077.4	136	gGc/gc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348536	89348536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	250	751	0	ENST00000301030.4:c.4414G>A	p.Glu1472Lys	p.E1472K	ENST00000301030	NM_001256183.1	1472	Gag/Aag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298066	15298066	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374767079		P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	226	929	1	ENST00000263388.2:c.1690G>A	p.Ala564Thr	p.A564T	ENST00000263388	NM_000435.2	564	Gcc/Acc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273901	10273901	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	193	762	0	ENST00000330684.3:c.368C>A	p.Pro123His	p.P123H	ENST00000330684	NM_001134407.1	123	cCc/cAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114901004	114901004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	196	581	1	ENST00000543371.1:c.614C>T	p.Thr205Met	p.T205M	ENST00000543371	NM_001198531.1	205	aCg/aTg																																																																															
MST1	4485	MSKCC	GRCh37	3	49724701	49724701	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776673101		P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	153	566	0	ENST00000449682.2:c.488G>A	p.Arg163Gln	p.R163Q	ENST00000449682	NM_020998.3	163	cGg/cAg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17127274	17127274	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138070947		P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	45	663	0	ENST00000285071.4:c.580C>T	p.Arg194Trp	p.R194W	ENST00000285071	NM_144997.5	194	Cgg/Tgg																																																																															
BLM	641	MSKCC	GRCh37	15	91303838	91303838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775209685		P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	68	322	0	ENST00000355112.3:c.1235C>T	p.Thr412Met	p.T412M	ENST00000355112	NM_000057.2	412	aCg/aTg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348080	348080	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	158	869	1	ENST00000262320.3:c.1426C>T	p.Gln476Ter	p.Q476*	ENST00000262320	NM_003502.3	476	Cag/Tag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15973646	15973646	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779429826		P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	171	437	0	ENST00000268712.3:c.4346C>T	p.Thr1449Met	p.T1449M	ENST00000268712	NM_006311.3	1449	aCg/aTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2130301	2130303	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	116	799	0	ENST00000219476.3:c.3535_3537del	p.Glu1179del	p.E1179del	ENST00000219476	NM_000548.3	1178	cAGGag/cag																																																																															
ID3	3399	MSKCC	GRCh37	1	23885736	23885736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	75	849	2	ENST00000374561.5:c.182G>A	p.Gly61Asp	p.G61D	ENST00000374561	NM_002167.4	61	gGc/gAc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104377103	104377103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	89	675	0	ENST00000369902.3:c.1214C>T	p.Ala405Val	p.A405V	ENST00000369902	NM_016169.3	405	gCc/gTc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12043874	12043874	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	65	313	0	ENST00000396373.4:c.1254-1G>T		p.X418_splice	ENST00000396373	NM_001987.4	418																																																																																
POLE	5426	MSKCC	GRCh37	12	133241954	133241954	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1060500825		P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	213	616	0	ENST00000320574.5:c.2402A>G	p.Tyr801Cys	p.Y801C	ENST00000320574	NM_006231.2	801	tAt/tGt																																																																															
POLE	5426	MSKCC	GRCh37	12	133249776	133249776	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	130	451	0	ENST00000320574.5:c.1447A>G	p.Thr483Ala	p.T483A	ENST00000320574	NM_006231.2	483	Acc/Gcc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937489	32937489	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876659220		P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	116	547	0	ENST00000380152.3:c.8150C>T	p.Ala2717Val	p.A2717V	ENST00000380152		2717	gCc/gTc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434621	110434621	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	192	576	0	ENST00000375856.3:c.3780G>T	p.Glu1260Asp	p.E1260D	ENST00000375856	NM_003749.2	1260	gaG/gaT																																																																															
CD276	80381	MSKCC	GRCh37	15	73994916	73994916	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs538781194		P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	45	185	0	ENST00000318443.5:c.400G>A	p.Val134Ile	p.V134I	ENST00000318443	NM_001024736.1	134	Gtc/Atc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641245	3641245	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	164	741	0	ENST00000294008.3:c.2394A>C	p.Lys798Asn	p.K798N	ENST00000294008	NM_032444.2	798	aaA/aaC																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641109	23641109	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	176	632	1	ENST00000261584.4:c.2366T>C	p.Leu789Pro	p.L789P	ENST00000261584	NM_024675.3	789	cTg/cCg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868073	56868073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	163	526	0	ENST00000308159.5:c.1571G>A	p.Arg524Gln	p.R524Q	ENST00000308159	NM_014669.4	524	cGg/cAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346815	89346815	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	21	565	0	ENST00000301030.4:c.6135del	p.Ala2046ProfsTer41	p.A2046Pfs*41	ENST00000301030	NM_001256183.1	2045	ccC/cc																																																																															
ALK	238	MSKCC	GRCh37	2	29940546	29940546	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	97	435	0	ENST00000389048.3:c.685T>C	p.Ser229Pro	p.S229P	ENST00000389048	NM_004304.4	229	Tca/Cca																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033412	48033412	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786203816		P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	109	403	0	ENST00000234420.5:c.3716T>C	p.Ile1239Thr	p.I1239T	ENST00000234420	NM_000179.2	1239	aTa/aCa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31389096	31389096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	103	425	0	ENST00000328111.2:c.2009G>A	p.Arg670Gln	p.R670Q	ENST00000328111	NM_006892.3	670	cGg/cAg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504404	186504407	+	frameshift_variant	Frame_Shift_Del	DEL	CAAA	CAAA	-			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	78	362	0	ENST00000323963.5:c.743_746del	p.Lys248SerfsTer23	p.K248Sfs*23	ENST00000323963		247	atCAAA/at																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197818	66197818	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	84	251	0	ENST00000273854.3:c.2881C>A	p.Pro961Thr	p.P961T	ENST00000273854	NM_004439.5	961	Cca/Aca																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38942975	38942975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	55	248	0	ENST00000357387.3:c.5012G>T	p.Arg1671Met	p.R1671M	ENST00000357387	NM_152756.3	1671	aGg/aTg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685214	86685214	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	78	235	0	ENST00000274376.6:c.2930T>C	p.Val977Ala	p.V977A	ENST00000274376	NM_002890.2	977	gTa/gCa																																																																															
APC	324	MSKCC	GRCh37	5	112176129	112176129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	110	422	0	ENST00000257430.4:c.4838C>T	p.Pro1613Leu	p.P1613L	ENST00000257430	NM_000038.5	1613	cCt/cTt																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194872	29194872	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754204824		P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1195	241	914	4	ENST00000240100.2:c.856C>T	p.Arg286Trp	p.R286W	ENST00000240100	NM_001394.6	286	Cgg/Tgg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135798821	135798821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	106	243	0	ENST00000298552.3:c.422C>A	p.Pro141Gln	p.P141Q	ENST00000298552	NM_001162426.1	141	cCa/cAa																																																																															
MED12	9968	MSKCC	GRCh37	X	70357659	70357659	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	196	768	0	ENST00000374080.3:c.5910C>A	p.Ser1970Arg	p.S1970R	ENST00000374080		1970	agC/agA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0058414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	112	389	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108178712	108178712	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0058414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	42	224	0	ENST00000278616.4:c.5762+1G>A		p.X1921_splice	ENST00000278616	NM_000051.3	1921																																																																																
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0008662-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			517	51	360	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008662-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			769	75	1046	0	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct																																																																															
NF2	4771	MSKCC	GRCh37	22	30069291	30069291	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008662-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			658	56	777	0	ENST00000338641.4:c.1156G>T	p.Glu386Ter	p.E386*	ENST00000338641	NM_000268.3	386	Gaa/Taa																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748080	72748080	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008662-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			543	57	635	0	ENST00000357731.5:c.98C>A	p.Pro33Gln	p.P33Q	ENST00000357731	NM_173808.2	33	cCg/cAg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843671	156843671	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008662-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	162	1120	0	ENST00000524377.1:c.1097C>A	p.Pro366His	p.P366H	ENST00000524377	NM_002529.3	366	cCc/cAc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729603	162729603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008662-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			558	74	517	0	ENST00000367921.3:c.689G>A	p.Gly230Asp	p.G230D	ENST00000367921	NM_006182.2	230	gGc/gAc																																																																															
RET	5979	MSKCC	GRCh37	10	43615193	43615193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0008662-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			735	50	867	1	ENST00000355710.3:c.2607G>T	p.Lys869Asn	p.K869N	ENST00000355710	NM_020975.4	869	aaG/aaT																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18644445	18644445	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008662-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			433	48	324	0	ENST00000266497.5:c.2623C>A	p.His875Asn	p.H875N	ENST00000266497		875	Cat/Aat																																																																															
MSI1	4440	MSKCC	GRCh37	12	120806867	120806867	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008662-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			116	20	103	0	ENST00000257552.2:c.28C>A	p.Leu10Ile	p.L10I	ENST00000257552	NM_002442.3	10	Ctc/Atc																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114282	73114282	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008662-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			167	42	195	0	ENST00000356692.5:c.919del	p.Glu307LysfsTer7	p.E307Kfs*7	ENST00000356692		306	gaG/ga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521688	89521688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008662-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			586	49	498	0	ENST00000336596.2:c.2765G>T	p.Gly922Val	p.G922V	ENST00000336596	NM_005233.5	922	gGt/gTt																																																																															
KDR	3791	MSKCC	GRCh37	4	55980432	55980432	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0008662-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			259	22	248	0	ENST00000263923.4:c.659G>T	p.Gly220Val	p.G220V	ENST00000263923	NM_002253.2	220	gGg/gTg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35875621	35875621	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008662-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	39	264	0	ENST00000303115.3:c.808C>A	p.Pro270Thr	p.P270T	ENST00000303115	NM_002185.3	270	Cct/Act																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250781	26250781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008662-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			410	68	529	0	ENST00000446824.2:c.53del	p.Arg18ProfsTer19	p.R18Pfs*19	ENST00000446824	NM_021018.2	18	cGc/cc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32184844	32184844	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0008662-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			469	91	624	0	ENST00000375023.3:c.1739G>T	p.Gly580Val	p.G580V	ENST00000375023	NM_004557.3	580	gGc/gTc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248104	110248104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008662-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			506	111	514	0	ENST00000374672.4:c.1368C>A	p.Phe456Leu	p.F456L	ENST00000374672	NM_004235.4	456	ttC/ttA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0035364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	118	298	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CBFB	865	MSKCC	GRCh37	16	67070575	67070575	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	100	266	0	ENST00000412916.2:c.199C>T	p.Gln67Ter	p.Q67*	ENST00000412916		67	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945343	151945343	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			167	139	145	0	ENST00000262189.6:c.2176C>T	p.Gln726Ter	p.Q726*	ENST00000262189	NM_170606.2	726	Cag/Tag																																																																															
AR	367	MSKCC	GRCh37	X	66766109	66766109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			765	309	776	0	ENST00000374690.3:c.1121C>T	p.Pro374Leu	p.P374L	ENST00000374690	NM_000044.3	374	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046090-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			313	138	364	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046090-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			938	534	942	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157488271	157488271	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1358728441		P-0046090-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			682	242	506	0	ENST00000346085.5:c.2977C>T	p.Gln993Ter	p.Q993*	ENST00000346085	NM_020732.3	993	Cag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971206	21971207	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CCTG			P-0046090-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			536	268	487	0	ENST00000304494.5:c.151-3_151dup	p.Val51AlafsTer70	p.V51Afs*70	ENST00000304494	NM_000077.4	51	gtc/gCAGGtc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43762263	43762263	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0046090-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			453	40	558	0	ENST00000382044.4:c.1182T>G	p.Asp394Glu	p.D394E	ENST00000382044	NM_001141980.1	394	gaT/gaG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0046499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	94	225	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922324	178922324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793732		P-0046499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	76	202	0	ENST00000263967.3:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000263967	NM_006218.2	365	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0048215-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	14	711	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0048215-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			521	14	581	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051681-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			209	270	281	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051681-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			445	611	651	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0051681-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			243	404	410	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472598	88472598	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1186552712		P-0051681-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			455	228	343	0	ENST00000360948.2:c.1957C>T	p.Leu653Phe	p.L653F	ENST00000360948	NM_001012338.2	653	Ctc/Ttc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114216	115114216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051681-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			270	427	472	0	ENST00000257566.3:c.1001G>T	p.Gly334Val	p.G334V	ENST00000257566	NM_016569.3	334	gGg/gTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858384	9858384	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200526162		P-0051681-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			695	164	358	0	ENST00000330684.3:c.3017C>T	p.Ala1006Val	p.A1006V	ENST00000330684	NM_001134407.1	1006	gCg/gTg																																																																															
MAX	4149	MSKCC	GRCh37	14	65544726	65544728	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0051681-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			296	363	467	0	ENST00000358664.4:c.198_200del	p.Lys66_Ala67delinsAsn	p.K66_A67delinsN	ENST00000358664	NM_002382.4	66	aaAGCc/aac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980913	40980913	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051681-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			459	246	324	0	ENST00000373198.4:c.1573G>T	p.Ala525Ser	p.A525S	ENST00000373198	NM_133170.3	525	Gct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577529	7577529	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	497	515	1	ENST00000269305.4:c.752T>A	p.Ile251Asn	p.I251N	ENST00000269305	NM_001126112.2	251	aTc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578178	7578178	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0053553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			775	19	571	0	ENST00000269305.4:c.671A>G	p.Glu224Gly	p.E224G	ENST00000269305	NM_001126112.2	224	gAg/gGg																																																																															
ERG	2078	MSKCC	GRCh37	21	39775482	39775482	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs568944041		P-0053553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			848	125	622	0	ENST00000288319.7:c.538A>G	p.Thr180Ala	p.T180A	ENST00000288319	NM_182918.3	180	Acc/Gcc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16265852	16265852	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			644	142	564	0	ENST00000375759.3:c.10925T>G	p.Leu3642Arg	p.L3642R	ENST00000375759	NM_015001.2	3642	cTg/cGg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163325204	163325204	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			514	59	288	0	ENST00000271452.3:c.1340A>C	p.Lys447Thr	p.K447T	ENST00000271452	NM_145697.2	447	aAg/aCg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852338	63852338	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1620	142	542	0	ENST00000279873.7:c.3116A>G	p.Glu1039Gly	p.E1039G	ENST00000279873	NM_032199.2	1039	gAg/gGg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427360	427372	+	frameshift_variant	Frame_Shift_Del	DEL	CATGGTGGGGTGC	CATGGTGGGGTGC	-			P-0053553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			933	134	569	0	ENST00000399788.2:c.2797_2809del	p.Ala933LeufsTer38	p.A933Lfs*38	ENST00000399788	NM_001042603.1	933	GCACCCCACCATGct/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444372	49444372	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs375587213		P-0053553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			654	73	603	0	ENST00000301067.7:c.2999T>G	p.Ile1000Ser	p.I1000S	ENST00000301067	NM_003482.3	1000	aTc/aGc																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675071	40675071	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			489	27	633	0	ENST00000249776.8:c.35T>A	p.Val12Asp	p.V12D	ENST00000249776	NM_033286.3	12	gTt/gAt																																																																															
BLM	641	MSKCC	GRCh37	15	91354627	91354627	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	86	353	0	ENST00000355112.3:c.4067A>C	p.Lys1356Thr	p.K1356T	ENST00000355112	NM_000057.2	1356	aAg/aCg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81990430	81990430	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1332140540		P-0053553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			789	115	440	0	ENST00000359376.3:c.3701A>C	p.Glu1234Ala	p.E1234A	ENST00000359376	NM_002661.3	1234	gAg/gCg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226723	2226723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			564	144	453	0	ENST00000398665.3:c.4203C>A	p.Asp1401Glu	p.D1401E	ENST00000398665	NM_032482.2	1401	gaC/gaA																																																																															
GNA11	2767	MSKCC	GRCh37	19	3119002	3119002	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			827	58	625	0	ENST00000078429.4:c.686T>C	p.Leu229Pro	p.L229P	ENST00000078429	NM_002067.2	229	cTc/cCc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123773	11123786	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TCATCGTGCCTCTC	TCATCGTGCCTCTC	-			P-0053553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	61	445	0	ENST00000344626.4:c.2425_2438del	p.Ile809AsnfsTer10	p.I809Nfs*10	ENST00000344626	NM_003072.3	808	aTCATCGTGCCTCTC/a																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291966	15291966	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			954	160	618	0	ENST00000263388.2:c.2800T>G	p.Phe934Val	p.F934V	ENST00000263388	NM_000435.2	934	Ttc/Gtc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965338	25965338	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			867	153	568	0	ENST00000435504.4:c.3868A>G	p.Ser1290Gly	p.S1290G	ENST00000435504		1290	Agt/Ggt																																																																															
ALK	238	MSKCC	GRCh37	2	29462577	29462577	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			851	136	543	0	ENST00000389048.3:c.2324T>G	p.Val775Gly	p.V775G	ENST00000389048	NM_004304.4	775	gTt/gGt																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24159005	24159005	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			220	907	569	0	ENST00000263121.7:c.677T>A	p.Leu226Gln	p.L226Q	ENST00000263121	NM_003073.3	226	cTg/cAg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24159010	24159010	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			227	908	567	0	ENST00000263121.7:c.682T>G	p.Leu228Val	p.L228V	ENST00000263121	NM_003073.3	228	Ttg/Gtg																																																																															
ATR	545	MSKCC	GRCh37	3	142279201	142279201	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			634	35	367	0	ENST00000350721.4:c.1445T>G	p.Leu482Arg	p.L482R	ENST00000350721	NM_001184.3	482	cTa/cGa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671057	30671057	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			805	152	582	0	ENST00000376406.3:c.5689T>G	p.Phe1897Val	p.F1897V	ENST00000376406	NM_014641.2	1897	Ttc/Gtc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168907	32168907	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			835	179	634	0	ENST00000375023.3:c.4126T>C	p.Ser1376Pro	p.S1376P	ENST00000375023	NM_004557.3	1376	Tcc/Ccc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967184	93967184	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	74	340	0	ENST00000369303.4:c.2168T>C	p.Leu723Pro	p.L723P	ENST00000369303	NM_004440.3	723	cTc/cCc																																																																															
ATRX	546	MSKCC	GRCh37	X	76874320	76874320	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			524	151	438	0	ENST00000373344.5:c.5402A>C	p.Lys1801Thr	p.K1801T	ENST00000373344	NM_000489.3	1801	aAa/aCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054120-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			428	83	492	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14629025	14629025	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1306302394		P-0054120-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			900	57	1073	0	ENST00000254322.2:c.137A>G	p.Lys46Arg	p.K46R	ENST00000254322	NM_006145.1	46	aAg/aGg																																																																															
AC008738.1	0	MSKCC	GRCh37	19	33793175	33793186	+	splice_donor_variant,non_coding_transcript_exon_variant,intron_variant	Splice_Site	DEL	GGGGCGGCAGGT	GGGGCGGCAGGT	-			P-0054120-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			352	17	407	0	ENST00000425420.2:n.245_246+10del		p.X82_splice	ENST00000425420		82																																																																																
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			641	854	400	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508867	106508867	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1247	231	537	0	ENST00000359195.3:c.861C>G	p.Ile287Met	p.I287M	ENST00000359195	NM_002649.2	287	atC/atG																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950054	38950054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			662	110	456	0	ENST00000357387.3:c.3896G>A	p.Arg1299Lys	p.R1299K	ENST00000357387	NM_152756.3	1299	aGa/aAa																																																																															
STAT3	6774	MSKCC	GRCh37	17	40478213	40478213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			678	134	298	0	ENST00000264657.5:c.1286C>T	p.Ser429Phe	p.S429F	ENST00000264657	NM_139276.2	429	tCc/tTc																																																																															
KIT	3815	MSKCC	GRCh37	4	55569969	55569969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			417	74	302	0	ENST00000288135.5:c.836C>T	p.Ser279Leu	p.S279L	ENST00000288135	NM_000222.2	279	tCa/tTa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231410	46231410	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			482	106	389	0	ENST00000334344.6:c.1250C>G	p.Ser417Ter	p.S417*	ENST00000334344	NM_152641.2	417	tCa/tGa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73343046	73343046	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144957541		P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			178	41	205	0	ENST00000377767.4:c.1760C>T	p.Ser587Phe	p.S587F	ENST00000377767	NM_014953.3	587	tCt/tTt																																																																															
YAP1	10413	MSKCC	GRCh37	11	101984936	101984936	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1192221094		P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			602	81	263	0	ENST00000282441.5:c.383C>T	p.Ser128Phe	p.S128F	ENST00000282441	NM_001130145.2	128	tCt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55229272	55229272	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768627073		P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			954	130	454	0	ENST00000275493.2:c.1579C>T	p.Arg527Trp	p.R527W	ENST00000275493	NM_005228.3	527	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221457	36221457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			2160	256	376	0	ENST00000222270.7:c.5216C>T	p.Ser1739Phe	p.S1739F	ENST00000222270	NM_014727.1	1739	tCc/tTc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449749	149449749	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774962435		P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			689	154	416	0	ENST00000286301.3:c.1315G>A	p.Asp439Asn	p.D439N	ENST00000286301	NM_005211.3	439	Gat/Aat																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419937	152419937	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1199	559	530	0	ENST00000206249.3:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000206249	NM_000125.3	542	Gag/Cag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144119	55144119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			666	113	402	0	ENST00000257290.5:c.1948C>T	p.His650Tyr	p.H650Y	ENST00000257290	NM_006206.4	650	Cac/Tac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602897	10602897	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			715	466	466	0	ENST00000171111.5:c.681del	p.Gln227HisfsTer3	p.Q227Hfs*3	ENST00000171111	NM_203500.1	227	caA/ca																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022540	12022540	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			987	219	668	0	ENST00000396373.4:c.646G>T	p.Glu216Ter	p.E216*	ENST00000396373	NM_001987.4	216	Gag/Tag																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001386	29001386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			785	100	371	0	ENST00000282397.4:c.1346G>T	p.Arg449Ile	p.R449I	ENST00000282397	NM_002019.4	449	aGa/aTa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570386	95570386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	51	256	0	ENST00000343455.3:c.3347C>T	p.Ala1116Val	p.A1116V	ENST00000343455	NM_177438.2	1116	gCt/gTt																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40682109	40682109	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			687	282	354	0	ENST00000249776.8:c.664G>C	p.Glu222Gln	p.E222Q	ENST00000249776	NM_033286.3	222	Gag/Cag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845523	72845523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			824	138	518	0	ENST00000268489.5:c.3817C>T	p.His1273Tyr	p.H1273Y	ENST00000268489	NM_006885.3	1273	Cac/Tac																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475604	40475604	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			611	84	262	0	ENST00000264657.5:c.1640C>G	p.Ala547Gly	p.A547G	ENST00000264657	NM_139276.2	547	gCt/gGt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40477040	40477040	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			788	160	344	1	ENST00000264657.5:c.1405C>T	p.Gln469Ter	p.Q469*	ENST00000264657	NM_139276.2	469	Cag/Tag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223188	36223188	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			2461	282	488	0	ENST00000222270.7:c.5738C>G	p.Ser1913Cys	p.S1913C	ENST00000222270	NM_014727.1	1913	tCc/tGc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851758	134851758	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	369	566	0	ENST00000398015.3:c.1164G>T	p.Glu388Asp	p.E388D	ENST00000398015	NM_004441.4	388	gaG/gaT																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960105	134960105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			881	474	481	0	ENST00000398015.3:c.2462G>T	p.Gly821Val	p.G821V	ENST00000398015	NM_004441.4	821	gGa/gTa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134977852	134977852	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	268	245	0	ENST00000398015.3:c.2847-2A>T		p.X949_splice	ENST00000398015	NM_004441.4	949																																																																																
ATR	545	MSKCC	GRCh37	3	142274837	142274837	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			744	268	547	0	ENST00000350721.4:c.2223C>G	p.Phe741Leu	p.F741L	ENST00000350721	NM_001184.3	741	ttC/ttG																																																																															
APC	324	MSKCC	GRCh37	5	112102885	112102885	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C	rs863225327		P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			245	57	263	0	ENST00000257430.4:c.221-1G>C		p.X74_splice	ENST00000257430	NM_000038.5	74																																																																																
NBN	4683	MSKCC	GRCh37	8	90965512	90965512	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			513	103	342	0	ENST00000265433.3:c.1805C>A	p.Thr602Asn	p.T602N	ENST00000265433	NM_002485.4	602	aCt/aAt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141549433	141549433	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			773	111	203	0	ENST00000220592.5:c.2155G>C	p.Asp719His	p.D719H	ENST00000220592	NM_012154.3	719	Gac/Cac																																																																															
APC	324	MSKCC	GRCh37	5	112179012	112179013	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0056247-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			240	48	249	0	ENST00000257430.4:c.7722_7723del	p.Ser2575CysfsTer7	p.S2575Cfs*7	ENST00000257430	NM_000038.5	2574	cTT/c																																																																															
ATM	472	MSKCC	GRCh37	11	108098533	108098533	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs55861249		P-0056391-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			56	20	247	0	ENST00000278616.4:c.103C>T	p.Arg35Ter	p.R35*	ENST00000278616	NM_000051.3	35	Cga/Tga																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797776	32797776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056391-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			97	45	747	0	ENST00000374899.4:c.1726G>A	p.Val576Met	p.V576M	ENST00000374899	NM_018833.2	576	Gtg/Atg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891575	151891576	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0056391-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			50	16	384	0	ENST00000262189.6:c.4456_4457del	p.Glu1486ThrfsTer9	p.E1486Tfs*9	ENST00000262189	NM_170606.2	1486	GAa/a																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212242	36212242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056391-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			129	10	1020	0	ENST00000222270.7:c.1993G>A	p.Val665Met	p.V665M	ENST00000222270	NM_014727.1	665	Gtg/Atg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517201		P-0057062-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			267	317	608	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579408	7579430	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGCCAGGAGGGGGCTGGTG	CAGGGGCCAGGAGGGGGCTGGTG	-	rs886041861		P-0057062-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			374	614	1026	0	ENST00000269305.4:c.257_279del	p.Ala86ValfsTer55	p.A86Vfs*55	ENST00000269305	NM_001126112.2	86	gCACCAGCCCCCTCCTGGCCCCTG/g																																																																															
MTOR	2475	MSKCC	GRCh37	1	11182050	11182050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057062-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			604	201	645	0	ENST00000361445.4:c.6796C>T	p.Arg2266Cys	p.R2266C	ENST00000361445	NM_004958.3	2266	Cgc/Tgc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870853	12870853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060500190		P-0057062-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	28	323	0	ENST00000228872.4:c.80C>T	p.Ser27Leu	p.S27L	ENST00000228872	NM_004064.3	27	tCg/tTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023202	27023262	+	frameshift_variant	Frame_Shift_Del	DEL	CGAACGGGAACGCGGGCCCTAGGCCCGCCCTGAACAATAACCTCACGGAGCCGCCCGGCGG	CGAACGGGAACGCGGGCCCTAGGCCCGCCCTGAACAATAACCTCACGGAGCCGCCCGGCGG	-			P-0057062-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			140	35	179	1	ENST00000324856.7:c.310_370del	p.Asn104AlafsTer108	p.N104Afs*108	ENST00000324856	NM_006015.4	103	tCGAACGGGAACGCGGGCCCTAGGCCCGCCCTGAACAATAACCTCACGGAGCCGCCCGGCGGc/tc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100143	30100143	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057062-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			489	163	664	0	ENST00000331968.5:c.1477G>C	p.Glu493Gln	p.E493Q	ENST00000331968	NM_002742.2	493	Gaa/Caa																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379721	17379721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057062-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1420	97	1158	0	ENST00000359435.4:c.106G>T	p.Asp36Tyr	p.D36Y	ENST00000359435	NM_001033549.1	36	Gac/Tac																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379769	17379769	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057062-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1497	105	1230	0	ENST00000359435.4:c.154G>C	p.Glu52Gln	p.E52Q	ENST00000359435	NM_001033549.1	52	Gag/Cag																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957798	1957798	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057062-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			591	171	751	0	ENST00000382891.5:c.2764T>C	p.Phe922Leu	p.F922L	ENST00000382891	NM_133335.3	922	Ttc/Ctc																																																																															
LYN	4067	MSKCC	GRCh37	8	56911023	56911023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057062-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	121	471	0	ENST00000519728.1:c.1169G>A	p.Arg390Lys	p.R390K	ENST00000519728	NM_002350.3	390	aGa/aAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0057378-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			297	188	513	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0057378-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	367	963	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971170	21971170	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057378-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			146	187	564	0	ENST00000304494.5:c.188T>G	p.Leu63Arg	p.L63R	ENST00000304494	NM_000077.4	63	cTg/cGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420016	49420017	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0057378-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			506	281	852	0	ENST00000301067.7:c.15732dup	p.Val5245SerfsTer13	p.V5245Sfs*13	ENST00000301067	NM_003482.3	5244	-/A																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438217	56438217	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057378-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			592	683	1158	0	ENST00000407977.2:c.776G>A	p.Trp259Ter	p.W259*	ENST00000407977		259	tGg/tAg																																																																															
CDH1	999	MSKCC	GRCh37	16	68835670	68835670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057427-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			676	324	614	0	ENST00000261769.5:c.261G>T	p.Arg87Ser	p.R87S	ENST00000261769	NM_004360.3	87	agG/agT																																																																															
JAK1	3716	MSKCC	GRCh37	1	65300294	65300294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057427-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			169	96	168	0	ENST00000342505.4:c.3416G>A	p.Arg1139Gln	p.R1139Q	ENST00000342505	NM_002227.2	1139	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604671	48604671	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0057427-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			365	21	367	0	ENST00000342988.3:c.1493T>A	p.Leu498Ter	p.L498*	ENST00000342988	NM_005359.5	498	tTa/tAa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419920	152419921	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0057427-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	267	627	0	ENST00000206249.3:c.1607_1608delinsAA	p.Leu536Gln	p.L536Q	ENST00000206249	NM_000125.3	536	cTC/cAA																																																																															
JAK1	3716	MSKCC	GRCh37	1	65316506	65316506	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057435-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			303	102	353	0	ENST00000342505.4:c.1736T>G	p.Leu579Arg	p.L579R	ENST00000342505	NM_002227.2	579	cTc/cGc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176176062	176176062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057435-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			531	172	706	0	ENST00000367669.3:c.53C>T	p.Ser18Phe	p.S18F	ENST00000367669	NM_022457.5	18	tCc/tTc																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61197642	61197663	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACTTCGTCGCTGGTGAGGAGA	GACTTCGTCGCTGGTGAGGAGA	-			P-0057435-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	203	516	0	ENST00000301761.2:c.26_36+11del		p.X9_splice	ENST00000301761	NM_017841.2	9																																																																																
DICER1	23405	MSKCC	GRCh37	14	95566193	95566193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057435-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	150	502	1	ENST00000343455.3:c.4130C>T	p.Pro1377Leu	p.P1377L	ENST00000343455	NM_177438.2	1377	cCt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0057435-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			154	390	534	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470474	25470474	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1024296111		P-0057435-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			324	167	624	1	ENST00000264709.3:c.1000G>A	p.Gly334Ser	p.G334S	ENST00000264709	NM_175629.2	334	Ggc/Agc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67590445	67590518	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGGTACAGCAAAGAATACATAGAAAAGTTTAAACGTGAAGGCAATGAGAAAGAAATACAAAGGTTGGTGTTTCC	CGGTACAGCAAAGAATACATAGAAAAGTTTAAACGTGAAGGCAATGAGAAAGAAATACAAAGGTTGGTGTTTCC	-			P-0057435-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			107	19	127	0	ENST00000274335.5:c.1508_1568+13del		p.X503_splice	ENST00000274335		503																																																																																
CARD11	84433	MSKCC	GRCh37	7	2987423	2987423	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-	rs747113439		P-0057435-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			270	90	331	1	ENST00000396946.4:c.8-2del		p.X3_splice	ENST00000396946	NM_032415.4	3																																																																																
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0057586-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	32	691	0	ENST00000269305.4:c.376del	p.Tyr126ThrfsTer44	p.Y126Tfs*44	ENST00000269305	NM_001126112.2	126	Tac/ac																																																																															
NF1	4763	MSKCC	GRCh37	17	29663716	29663717	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0057586-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			621	11	0	0	ENST00000358273.4:c.6213dup	p.His2072ThrfsTer6	p.H2072Tfs*6	ENST00000358273	NM_001042492.2	2071	caa/cAaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0057588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			239	13	450	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0057588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	24	902	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs113954997		P-0057588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			218	8	581	1	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157150457	157150457	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			331	20	746	0	ENST00000346085.5:c.1639G>T	p.Gly547Ter	p.G547*	ENST00000346085	NM_020732.3	547	Gga/Tga																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080613	5080613	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			223	19	364	0	ENST00000381652.3:c.2364G>T	p.Met788Ile	p.M788I	ENST00000381652	NM_004972.3	788	atG/atT																																																																															
BTK	695	MSKCC	GRCh37	X	100611246	100611246	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			272	15	565	0	ENST00000308731.7:c.1360C>A	p.His454Asn	p.H454N	ENST00000308731	NM_000061.2	454	Cat/Aat																																																																															
TET1	80312	MSKCC	GRCh37	10	70451206	70451206	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			349	22	870	0	ENST00000373644.4:c.6046G>T	p.Gly2016Cys	p.G2016C	ENST00000373644	NM_030625.2	2016	Ggc/Tgc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514736	103514736	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			269	21	467	0	ENST00000355739.4:c.1237G>C	p.Gly413Arg	p.G413R	ENST00000355739	NM_000123.3	413	Ggg/Cgg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562968	95562968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			268	17	425	0	ENST00000343455.3:c.4289G>T	p.Arg1430Met	p.R1430M	ENST00000343455	NM_177438.2	1430	aGg/aTg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99439984	99439984	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0057588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			168	10	330	0	ENST00000268035.6:c.954-2A>T		p.X318_splice	ENST00000268035	NM_000875.3	318																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9984937	9984937	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1231057100		P-0057588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			275	15	549	0	ENST00000330684.3:c.1028G>T	p.Trp343Leu	p.W343L	ENST00000330684	NM_001134407.1	343	tGg/tTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098488	11098488	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111491424		P-0057588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	15	826	3	ENST00000344626.4:c.1006C>T	p.Pro336Ser	p.P336S	ENST00000344626	NM_003072.3	336	Ccg/Tcg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31015983	31015983	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			299	21	602	0	ENST00000375687.4:c.305C>G	p.Pro102Arg	p.P102R	ENST00000375687	NM_015338.5	102	cCa/cGa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628829	187628829	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			269	15	670	2	ENST00000441802.2:c.2153G>T	p.Ser718Ile	p.S718I	ENST00000441802	NM_005245.3	718	aGc/aTc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149509506	149509506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			332	19	989	1	ENST00000261799.4:c.1393C>A	p.Leu465Met	p.L465M	ENST00000261799	NM_002609.3	465	Ctg/Atg																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402482	20402482	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	22	925	0	ENST00000346618.3:c.19C>G	p.Pro7Ala	p.P7A	ENST00000346618	NM_001949.4	7	Ccc/Gcc																																																																															
PARK2	5071	MSKCC	GRCh37	6	161990437	161990437	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	36	548	0	ENST00000366898.1:c.883A>T	p.Asn295Tyr	p.N295Y	ENST00000366898	NM_004562.2	295	Aac/Tac																																																																															
HGF	3082	MSKCC	GRCh37	7	81374426	81374426	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			222	13	408	0	ENST00000222390.5:c.636G>C	p.Met212Ile	p.M212I	ENST00000222390	NM_000601.4	212	atG/atC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151960183	151960183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			183	10	352	0	ENST00000262189.6:c.1217G>T	p.Cys406Phe	p.C406F	ENST00000262189	NM_170606.2	406	tGt/tTt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38314921	38314921	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			296	26	838	0	ENST00000425967.3:c.143del	p.Thr48LysfsTer88	p.T48Kfs*88	ENST00000425967	NM_001174067.1	48	aCa/aa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98220524	98220524	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	14	620	0	ENST00000331920.6:c.2939G>T	p.Gly980Val	p.G980V	ENST00000331920	NM_000264.3	980	gGc/gTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411855	63411855	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			428	31	1297	0	ENST00000330258.3:c.1312C>A	p.Leu438Ile	p.L438I	ENST00000330258	NM_152424.3	438	Ctc/Atc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0057821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	1104	463	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	735	524	0	ENST00000269305.4:c.528C>A	p.Cys176Ter	p.C176*	ENST00000269305	NM_001126112.2	176	tgC/tgA																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524486	44524486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	180	238	0	ENST00000291552.4:c.71T>C	p.Ile24Thr	p.I24T	ENST00000291552	NM_006758.2	24	aTt/aCt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141568653	141568653	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	267	636	0	ENST00000220592.5:c.809C>G	p.Thr270Arg	p.T270R	ENST00000220592	NM_012154.3	270	aCg/aGg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			590	194	860	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928073	178928073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			112	49	514	0	ENST00000263967.3:c.1351G>A	p.Gly451Arg	p.G451R	ENST00000263967	NM_006218.2	451	Gga/Aga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720732	89720733	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0057849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			8	20	266	0	ENST00000371953.3:c.884dup	p.Cys296MetfsTer2	p.C296Mfs*2	ENST00000371953	NM_000314.4	295	cta/cTta																																																																															
ATM	472	MSKCC	GRCh37	11	108160496	108160501	+	inframe_deletion	In_Frame_Del	DEL	TATTTA	TATTTA	-			P-0057849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			54	35	475	0	ENST00000278616.4:c.4406_4411del	p.Ile1469_Tyr1470del	p.I1469_Y1470del	ENST00000278616	NM_000051.3	1468	gtTATTTAt/gtt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942661	71942661	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0057849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			83	309	753	0	ENST00000298229.2:c.1615+2T>A		p.X539_splice	ENST00000298229	NM_001567.3	539																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0057851-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	248	667	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0057851-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1170	247	732	1	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577137	7577137	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057851-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			873	258	727	0	ENST00000269305.4:c.801del	p.Asn268ThrfsTer77	p.N268Tfs*77	ENST00000269305	NM_001126112.2	267	cgG/cg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347099	347099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057851-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1442	187	1051	0	ENST00000262320.3:c.1912G>C	p.Glu638Gln	p.E638Q	ENST00000262320	NM_003502.3	638	Gag/Cag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67650681	67650681	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057851-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			777	97	607	0	ENST00000264010.4:c.986T>C	p.Met329Thr	p.M329T	ENST00000264010	NM_006565.3	329	aTg/aCg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998132	169998132	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057851-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			694	100	533	0	ENST00000295797.4:c.823A>G	p.Lys275Glu	p.K275E	ENST00000295797	NM_002740.5	275	Aaa/Gaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0057855-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			517	62	387	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0057855-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			538	26	422	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931588		P-0057855-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			382	24	281	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767342		P-0057855-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	16	375	0	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936103	178936103	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057855-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			680	37	563	0	ENST00000263967.3:c.1645G>T	p.Asp549Tyr	p.D549Y	ENST00000263967	NM_006218.2	549	Gat/Tat																																																																															
FLT3	2322	MSKCC	GRCh37	13	28611379	28611379	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057855-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			459	103	326	0	ENST00000241453.7:c.1252T>G	p.Phe418Val	p.F418V	ENST00000241453	NM_004119.2	418	Ttc/Gtc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0058053-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			545	32	503	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
RB1	5925	MSKCC	GRCh37	13	48941638	48941641	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0058053-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			161	10	95	0	ENST00000267163.4:c.951_954del	p.Ser318AsnfsTer13	p.S318Nfs*13	ENST00000267163	NM_000321.2	316	aaTCTT/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574022	7574023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGCCCACG			P-0058053-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	55	998	0	ENST00000269305.4:c.997_1004dup	p.Glu336ValfsTer12	p.E336Vfs*12	ENST00000269305	NM_001126112.2	335	cgt/cgCGTGGGCGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29552152	29552152	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199474738		P-0058068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	94	248	0	ENST00000358273.4:c.1885G>A	p.Gly629Arg	p.G629R	ENST00000358273	NM_001042492.2	629	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577576	7577578	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0058068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	283	670	0	ENST00000269305.4:c.703_705del	p.Asn235del	p.N235del	ENST00000269305	NM_001126112.2	235	AAC/-																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0058068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	73	316	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959064	2959064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	342	874	2	ENST00000396946.4:c.2452C>T	p.Arg818Trp	p.R818W	ENST00000396946	NM_032415.4	818	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227999	36227999	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751795961		P-0058068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1314	82	1057	1	ENST00000222270.7:c.7385C>T	p.Ala2462Val	p.A2462V	ENST00000222270	NM_014727.1	2462	gCg/gTg																																																																															
YAP1	10413	MSKCC	GRCh37	11	102076662	102076662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	47	438	0	ENST00000282441.5:c.841C>A	p.Gln281Lys	p.Q281K	ENST00000282441	NM_001130145.2	281	Cag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129171	152129171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	545	1072	0	ENST00000206249.3:c.124G>A	p.Val42Met	p.V42M	ENST00000206249	NM_000125.3	42	Gtg/Atg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038790	47038811	+	protein_altering_variant	In_Frame_Del	DEL	GCCAGGGCCTGCTTCCCCTGCC	GCCAGGGCCTGCTTCCCCTGCC	A			P-0058068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	577	1242	0	ENST00000329236.7:c.566_587delinsA	p.Ser189_Pro196delinsLys	p.S189_P196delinsK	ENST00000329236	NM_001204466.1	189	aGCCAGGGCCTGCTTCCCCTGCCg/aAg																																																																															
APC	324	MSKCC	GRCh37	5	112175472	112175476	+	frameshift_variant	Frame_Shift_Del	DEL	ATAGT	ATAGT	TTGG			P-0058068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	89	329	1	ENST00000257430.4:c.4181_4185delinsTTGG	p.Asp1394ValfsTer21	p.D1394Vfs*21	ENST00000257430	NM_000038.5	1394	gATAGT/gTTGG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0058069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	131	397	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0058069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	500	895	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971150	21971173	+	inframe_deletion	In_Frame_Del	DEL	GCTCCGCGCCGTGGAGCAGCAGCA	GCTCCGCGCCGTGGAGCAGCAGCA	-			P-0058069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	239	597	0	ENST00000304494.5:c.185_208del	p.Leu62_Glu69del	p.L62_E69del	ENST00000304494	NM_000077.4	62	cTGCTGCTGCTCCACGGCGCGGAGCcc/ccc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			270	117	489	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184159	56184159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			229	23	459	0	ENST00000399503.3:c.4364C>T	p.Ser1455Phe	p.S1455F	ENST00000399503	NM_005921.1	1455	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577111	7577112	+	inframe_insertion	In_Frame_Ins	INS	-	-	CACAAA			P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	200	887	1	ENST00000269305.4:c.821_826dup	p.Val274_Cys275dup	p.V274_C275dup	ENST00000269305	NM_001126112.2	274	gcc/gTTTGTGcc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16097870	16097870	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs76145228		P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			120	46	230	0	ENST00000268712.3:c.14G>T	p.Gly5Val	p.G5V	ENST00000268712	NM_006311.3	5	gGt/gTt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955085	17955085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	158	1190	0	ENST00000458235.1:c.142C>T	p.His48Tyr	p.H48Y	ENST00000458235	NM_000215.3	48	Cac/Tac																																																																															
ALK	238	MSKCC	GRCh37	2	29917813	29917813	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			451	66	1024	0	ENST00000389048.3:c.855C>A	p.Asn285Lys	p.N285K	ENST00000389048	NM_004304.4	285	aaC/aaA																																																																															
JAK2	3717	MSKCC	GRCh37	9	5055739	5055739	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			208	24	486	0	ENST00000381652.3:c.1007C>G	p.Ser336Ter	p.S336*	ENST00000381652	NM_004972.3	336	tCa/tGa																																																																															
APC	324	MSKCC	GRCh37	5	112173928	112173928	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs763546422		P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			237	31	494	0	ENST00000257430.4:c.2637G>T	p.Gln879His	p.Q879H	ENST00000257430	NM_000038.5	879	caG/caT																																																																															
JUN	3725	MSKCC	GRCh37	1	59247868	59247868	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			646	71	1064	0	ENST00000371222.2:c.875C>A	p.Ser292Ter	p.S292*	ENST00000371222	NM_002228.3	292	tCg/tAg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120508171	120508171	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			357	53	550	0	ENST00000256646.2:c.1586G>T	p.Cys529Phe	p.C529F	ENST00000256646	NM_024408.3	529	tGc/tTc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843468	156843468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			630	45	918	0	ENST00000524377.1:c.894C>A	p.His298Gln	p.H298Q	ENST00000524377	NM_002529.3	298	caC/caA																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625305	69625305	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			348	33	1147	1	ENST00000334134.2:c.488C>A	p.Pro163His	p.P163H	ENST00000334134	NM_005247.2	163	cCc/cAc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281356	49281356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	58	1087	2	ENST00000282018.3:c.403G>A	p.Val135Met	p.V135M	ENST00000282018	NM_020377.2	135	Gtg/Atg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031828	10031828	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			296	78	875	0	ENST00000330684.3:c.995A>T	p.His332Leu	p.H332L	ENST00000330684	NM_001134407.1	332	cAc/cTc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40368058	40368058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			671	58	750	0	ENST00000293328.3:c.1447C>T	p.Leu483Phe	p.L483F	ENST00000293328	NM_012448.3	483	Ctc/Ttc																																																																															
ALK	238	MSKCC	GRCh37	2	29462550	29462550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			293	43	751	0	ENST00000389048.3:c.2351C>A	p.Pro784His	p.P784H	ENST00000389048	NM_004304.4	784	cCc/cAc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662161	227662161	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			566	76	1125	0	ENST00000305123.5:c.1294G>T	p.Gly432Cys	p.G432C	ENST00000305123	NM_005544.2	432	Ggc/Tgc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546761	9546761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			174	18	681	0	ENST00000353224.5:c.1261G>T	p.Asp421Tyr	p.D421Y	ENST00000353224	NM_177990.2	421	Gac/Tac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733301	40733301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			314	44	632	0	ENST00000373198.4:c.3505G>A	p.Ala1169Thr	p.A1169T	ENST00000373198	NM_133170.3	1169	Gcc/Acc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851763	134851763	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			352	33	980	0	ENST00000398015.3:c.1169G>C	p.Arg390Pro	p.R390P	ENST00000398015	NM_004441.4	390	cGc/cCc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286188	66286188	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			146	32	527	0	ENST00000273854.3:c.1498C>A	p.Leu500Ile	p.L500I	ENST00000273854	NM_004439.5	500	Cta/Ata																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356134	66356134	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			253	48	720	0	ENST00000273854.3:c.1363C>G	p.Arg455Gly	p.R455G	ENST00000273854	NM_004439.5	455	Cgg/Ggg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956586	93956586	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			184	83	530	0	ENST00000369303.4:c.2650G>T	p.Glu884Ter	p.E884*	ENST00000369303	NM_004440.3	884	Gaa/Taa																																																																															
FYN	2534	MSKCC	GRCh37	6	112025283	112025283	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	98	722	0	ENST00000368678.4:c.466C>G	p.Arg156Gly	p.R156G	ENST00000368678		156	Cga/Gga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265504	152265504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	140	864	0	ENST00000206249.3:c.957G>T	p.Leu319Phe	p.L319F	ENST00000206249	NM_000125.3	319	ttG/ttT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681087	117681089	+	missense_variant	Missense_Mutation	ONP	AAC	AAC	GAA			P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			192	91	702	0	ENST00000368508.3:c.3531_3533delinsTTC	p.Phe1178Ser	p.F1178S	ENST00000368508	NM_002944.2	1177	acGTTt/acTTCt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70970912	70970914	+	missense_variant	Missense_Mutation	ONP	TGG	TGG	AGA			P-0058085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	46	757	0	ENST00000276594.2:c.1347_1349delinsTCT	p.His450Leu	p.H450L	ENST00000276594	NM_024504.3	449	atCCAc/atTCTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0058089-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			53	8	275	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058089-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			52	19	270	0	ENST00000397062.3:c.92G>C	p.Gly31Ala	p.G31A	ENST00000397062	NM_006164.4	31	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0058089-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			130	64	660	1	ENST00000269305.4:c.96+1G>A		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																																
MYOD1	4654	MSKCC	GRCh37	11	17741681	17741681	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058089-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			211	41	458	0	ENST00000250003.3:c.352G>C	p.Glu118Gln	p.E118Q	ENST00000250003	NM_002478.4	118	Gag/Cag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0058091-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			962	5882	473	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0058091-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1208	712	677	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034491	47034491	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0058091-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			528	581	275	0	ENST00000329236.7:c.345G>T	p.Gln115His	p.Q115H	ENST00000329236	NM_001204466.1	115	caG/caT																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518453	204518453	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058091-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			352	48	306	0	ENST00000367182.3:c.1116A>T	p.Arg372Ser	p.R372S	ENST00000367182	NM_001278516.1	372	agA/agT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0058136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	414	508	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175417	112175418	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0058136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	232	228	0	ENST00000257430.4:c.4127_4128del	p.Tyr1376CysfsTer9	p.Y1376Cfs*9	ENST00000257430	NM_000038.5	1376	TAt/t																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951955	178951955	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	151	368	0	ENST00000263967.3:c.3010A>G	p.Met1004Val	p.M1004V	ENST00000263967	NM_006218.2	1004	Atg/Gtg																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966665	36966665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	337	427	0	ENST00000358127.4:c.661C>T	p.Arg221Trp	p.R221W	ENST00000358127	NM_001280556.1	221	Cgg/Tgg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120381	70120382	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0058136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	594	700	0	ENST00000245479.2:c.1386_1387dup	p.Tyr463SerfsTer8	p.Y463Sfs*8	ENST00000245479	NM_000346.3	461	-/CT																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911499	114911500	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0058136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	155	195	0	ENST00000543371.1:c.1022dup	p.Glu342GlyfsTer14	p.E342Gfs*14	ENST00000543371	NM_001198531.1	339	-/A																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99456421	99456421	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	144	416	0	ENST00000268035.6:c.1738T>A	p.Tyr580Asn	p.Y580N	ENST00000268035	NM_000875.3	580	Tac/Aac																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182228	99182228	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0058136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	223	416	0	ENST00000074304.5:c.2293C>A	p.Arg765Ser	p.R765S	ENST00000074304	NM_001134224.1	765	Cgc/Agc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620610	52620610	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	340	350	0	ENST00000394830.3:c.3143T>C	p.Ile1048Thr	p.I1048T	ENST00000394830	NM_018313.4	1048	aTt/aCt																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797749	32797749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	159	469	0	ENST00000374899.4:c.1753G>T	p.Ala585Ser	p.A585S	ENST00000374899	NM_018833.2	585	Gca/Tca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0058155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	244	382	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
TEK	7010	MSKCC	GRCh37	9	27212737	27212737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	342	703	0	ENST00000380036.4:c.2719C>G	p.His907Asp	p.H907D	ENST00000380036	NM_000459.3	907	Cat/Gat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0058181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	63	156	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108141976	108141976	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0058181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	25	136	0	ENST00000278616.4:c.2922-2A>C		p.X974_splice	ENST00000278616	NM_000051.3	974																																																																																
NCOR1	9611	MSKCC	GRCh37	17	16042436	16042436	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	35	166	0	ENST00000268712.3:c.1238G>T	p.Arg413Ile	p.R413I	ENST00000268712	NM_006311.3	413	aGa/aTa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533908	63533908	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	87	336	0	ENST00000307078.5:c.1246G>T	p.Gly416Trp	p.G416W	ENST00000307078	NM_004655.3	416	Ggg/Tgg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17952349	17952349	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0058181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1186	94	533	0	ENST00000458235.1:c.991G>T	p.Glu331Ter	p.E331*	ENST00000458235	NM_000215.3	331	Gag/Tag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198274701	198274701	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	40	189	0	ENST00000335508.6:c.697G>T	p.Asp233Tyr	p.D233Y	ENST00000335508	NM_012433.2	233	Gat/Tat																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046445	69046445	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	87	272	0	ENST00000288368.4:c.3918G>T	p.Arg1306Ser	p.R1306S	ENST00000288368	NM_024870.2	1306	agG/agT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034455	47034456	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0058181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	68	428	0	ENST00000329236.7:c.311dup	p.Leu104PhefsTer28	p.L104Ffs*28	ENST00000329236	NM_001204466.1	103	-/T																																																																															
AR	367	MSKCC	GRCh37	X	66765608	66765608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1284	91	569	0	ENST00000374690.3:c.620G>A	p.Ser207Asn	p.S207N	ENST00000374690	NM_000044.3	207	aGc/aAc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0058183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	107	500	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032138	26032138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	90	542	0	ENST00000244661.2:c.151G>A	p.Glu51Lys	p.E51K	ENST00000244661	NM_003537.3	51	Gag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061482	38061483	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0058183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	77	681	0	ENST00000250448.2:c.506_507delinsAT	p.Ala169Asp	p.A169D	ENST00000250448	NM_004496.3	169	gCC/gAT																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866330	42866330	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	175	893	0	ENST00000398585.3:c.302T>C	p.Val101Ala	p.V101A	ENST00000398585	NM_001135099.1	101	gTc/gCc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517877	187517884	+	frameshift_variant	Frame_Shift_Del	DEL	AGGAATTT	AGGAATTT	-			P-0058183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	83	466	0	ENST00000441802.2:c.12810_12817del	p.Asn4271ArgfsTer15	p.N4271Rfs*15	ENST00000441802	NM_005245.3	4270	cgAAATTCCTtc/cgtc																																																																															
APC	324	MSKCC	GRCh37	5	112154974	112154974	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0058183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	40	606	0	ENST00000257430.4:c.1246del	p.Tyr416ThrfsTer38	p.Y416Tfs*38	ENST00000257430	NM_000038.5	415	gcT/gc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0058184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	44	633	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TERT	7015	MSKCC	GRCh37	5	1294703	1294703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	58	655	0	ENST00000310581.5:c.298G>A	p.Gly100Ser	p.G100S	ENST00000310581	NM_198253.2	100	Ggc/Agc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981503	201981503	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	74	889	0	ENST00000359651.3:c.417C>G	p.Ile139Met	p.I139M	ENST00000359651		139	atC/atG																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032564	47032567	+	frameshift_variant	Frame_Shift_Del	DEL	GGGA	GGGA	-			P-0058184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	97	908	0	ENST00000329236.7:c.241_244del	p.Glu81PhefsTer3	p.E81Ffs*3	ENST00000329236	NM_001204466.1	80	cGGGAg/cg																																																																															
PGR	5241	MSKCC	GRCh37	11	100922256	100922256	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	33	301	0	ENST00000325455.5:c.2256G>T	p.Gln752His	p.Q752H	ENST00000325455	NM_001202474.3	752	caG/caT																																																																															
RB1	5925	MSKCC	GRCh37	13	49039133	49039133	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs587776786		P-0058186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	129	122	0	ENST00000267163.4:c.2212-1G>A		p.X738_splice	ENST00000267163	NM_000321.2	738																																																																																
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0058186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	527	949	1	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																															
MALT1	10892	MSKCC	GRCh37	18	56411570	56411570	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0058186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	29	143	0	ENST00000348428.3:c.1754A>T	p.Glu585Val	p.E585V	ENST00000348428	NM_006785.3	585	gAa/gTa																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933289	49933289	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	300	1187	0	ENST00000296474.3:c.2821A>T	p.Ile941Phe	p.I941F	ENST00000296474	NM_002447.2	941	Atc/Ttc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0058186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	199	330	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911071	29911071	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1238	118	1210	0	ENST00000376809.5:c.370G>C	p.Gly124Arg	p.G124R	ENST00000376809	NM_002116.7	124	Ggc/Cgc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911157	29911157	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs41558424		P-0058186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	316	1043	0	ENST00000376809.5:c.456G>C	p.Glu152Asp	p.E152D	ENST00000376809	NM_002116.7	152	gaG/gaC																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157510884	157510884	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	161	748	0	ENST00000346085.5:c.3659A>C	p.His1220Pro	p.H1220P	ENST00000346085	NM_020732.3	1220	cAc/cCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241659	55241659	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1273890779		P-0058186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	607	925	0	ENST00000275493.2:c.2107C>T	p.Leu703Phe	p.L703F	ENST00000275493	NM_005228.3	703	Ctc/Ttc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0058186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	339	438	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0058191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	58	362	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578224	7578224	+	stop_gained	Nonsense_Mutation	SNP	T	T	A	rs1429743956		P-0058191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	73	924	0	ENST00000269305.4:c.625A>T	p.Arg209Ter	p.R209*	ENST00000269305	NM_001126112.2	209	Aga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27102199	27102199	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0058191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	43	422	0	ENST00000324856.7:c.5124+1G>T		p.X1708_splice	ENST00000324856	NM_006015.4	1708																																																																																
EED	8726	MSKCC	GRCh37	11	85975246	85975246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	33	267	0	ENST00000263360.6:c.667G>A	p.Asp223Asn	p.D223N	ENST00000263360	NM_003797.3	223	Gac/Aac																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865134	57865134	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	84	1248	1	ENST00000228682.2:c.2611G>T	p.Asp871Tyr	p.D871Y	ENST00000228682	NM_005269.2	871	Gat/Tat																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041725	29041725	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs779103709		P-0058191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	52	361	0	ENST00000282397.4:c.94C>A	p.Pro32Thr	p.P32T	ENST00000282397	NM_002019.4	32	Cct/Act																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107698	30107698	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0058191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	65	511	0	ENST00000331968.5:c.982G>T	p.Gly328Ter	p.G328*	ENST00000331968	NM_002742.2	328	Gga/Tga																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376398	15376398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	108	1215	0	ENST00000263377.2:c.616C>T	p.Pro206Ser	p.P206S	ENST00000263377	NM_058243.2	206	Ccg/Tcg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027406	48027406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	47	493	0	ENST00000234420.5:c.2284G>A	p.Val762Ile	p.V762I	ENST00000234420	NM_000179.2	762	Gtt/Att																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114125	73114125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	30	341	0	ENST00000356692.5:c.761G>T	p.Gly254Val	p.G254V	ENST00000356692		254	gGt/gTt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372100	55372100	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	90	801	2	ENST00000297316.4:c.790G>T	p.Glu264Ter	p.E264*	ENST00000297316	NM_022454.3	264	Gag/Tag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98221935	98221935	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201118857		P-0058191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	67	813	0	ENST00000331920.6:c.2834G>T	p.Arg945Leu	p.R945L	ENST00000331920	NM_000264.3	945	cGa/cTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0058193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	679	491	6	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs80338963		P-0058193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	384	480	0	ENST00000342988.3:c.1081C>G	p.Arg361Gly	p.R361G	ENST00000342988	NM_005359.5	361	Cgc/Ggc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380261	25380261	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	765	509	6	ENST00000256078.4:c.197C>A	p.Ala66Glu	p.A66E	ENST00000256078	NM_033360.2	66	gCa/gAa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99193461	99193461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	271	968	0	ENST00000074304.5:c.2656C>T	p.Arg886Cys	p.R886C	ENST00000074304	NM_001134224.1	886	Cgc/Tgc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115273268	115273268	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0058193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	112	376	2	ENST00000438362.2:c.1190G>A	p.Gly397Asp	p.G397D	ENST00000438362	NM_001242891.1	397	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578277	+	frameshift_variant	Frame_Shift_Del	DEL	AGATGCTGAG	AGATGCTGAG	-			P-0058193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	718	799	0	ENST00000269305.4:c.572_581del	p.Pro191LeufsTer53	p.P191Lfs*53	ENST00000269305	NM_001126112.2	191	cCTCAGCATCTt/ct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0058196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	40	357	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986565	36986566	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATACCTGGCCCTGCAGCGCCGCGGGGCTGGCGGCGTGGTGCGC			P-0058196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	32	895	0	ENST00000354822.5:c.1081_1123dup	p.Ser375CysfsTer78	p.S375Cfs*78	ENST00000354822	NM_001079668.2	375	tcc/tGCGCACCACGCCGCCAGCCCCGCGGCGCTGCAGGGCCAGGTATcc																																																																															
RB1	5925	MSKCC	GRCh37	13	49030485	49030485	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs483352690		P-0058200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	76	248	0	ENST00000267163.4:c.1960G>A	p.Val654Met	p.V654M	ENST00000267163	NM_000321.2	654	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579372	7579372	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	605	977	1	ENST00000269305.4:c.315del	p.Ser106AlafsTer17	p.S106Afs*17	ENST00000269305	NM_001126112.2	105	ggC/gg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061228	38061228	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	74	985	0	ENST00000250448.2:c.761T>C	p.Phe254Ser	p.F254S	ENST00000250448	NM_004496.3	254	tTc/tCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0058214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	50	575	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747342068		P-0058214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	89	1002	0	ENST00000269305.4:c.394A>G	p.Lys132Glu	p.K132E	ENST00000269305	NM_001126112.2	132	Aag/Gag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18658296	18658296	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371412006		P-0058214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	46	406	0	ENST00000266497.5:c.3101G>A	p.Arg1034His	p.R1034H	ENST00000266497		1034	cGt/cAt																																																																															
WT1	7490	MSKCC	GRCh37	11	32450105	32450105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1190263054		P-0058214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	66	984	2	ENST00000332351.3:c.707C>T	p.Ala236Val	p.A236V	ENST00000332351	NM_024426.4	236	gCg/gTg																																																																															
RET	5979	MSKCC	GRCh37	10	43610023	43610023	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0058214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	51	983	0	ENST00000355710.3:c.1975del	p.Cys659AlafsTer16	p.C659Afs*16	ENST00000355710	NM_020975.4	659	Tgc/gc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444779	49444779	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	10	873	0	ENST00000301067.7:c.2687G>T	p.Gly896Val	p.G896V	ENST00000301067	NM_003482.3	896	gGa/gTa																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23539079	23539080	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGGTTTGGG			P-0058224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	43	487	0	ENST00000380871.4:c.350_359dup	p.Lys121ProfsTer4	p.K121Pfs*4	ENST00000380871	NM_006167.3	120	cct/ccCCCAAACCCCt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061220	38061229	+	protein_altering_variant	In_Frame_Del	DEL	CGTTCTCGAA	CGTTCTCGAA	G			P-0058224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	107	509	0	ENST00000250448.2:c.760_769delinsC	p.Phe254_Gly257delinsArg	p.F254_G257delinsR	ENST00000250448	NM_004496.3	254	TTCGAGAACGgc/Cgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0058226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	501	570	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001366	29001366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779189056		P-0058226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	209	315	0	ENST00000282397.4:c.1366G>A	p.Ala456Thr	p.A456T	ENST00000282397	NM_002019.4	456	Gca/Aca																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62309645	62309645	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	144	534	0	ENST00000508582.2:c.1055C>A	p.Ala352Asp	p.A352D	ENST00000508582		352	gCc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112176395	112176395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	19	234	0	ENST00000257430.4:c.5104G>C	p.Gly1702Arg	p.G1702R	ENST00000257430	NM_000038.5	1702	Gga/Cga																																																																															
MAX	4149	MSKCC	GRCh37	14	65544642	65544642	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	51	647	0	ENST00000358664.4:c.284T>A	p.Leu95Gln	p.L95Q	ENST00000358664	NM_002382.4	95	cTg/cAg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39595501	39595501	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	45	298	0	ENST00000262039.4:c.1387A>G	p.Lys463Glu	p.K463E	ENST00000262039	NM_002647.2	463	Aaa/Gaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0058251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	38	310	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112176383	112176383	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	26	278	1	ENST00000257430.4:c.5092G>T	p.Asp1698Tyr	p.D1698Y	ENST00000257430	NM_000038.5	1698	Gat/Tat																																																																															
ERG	2078	MSKCC	GRCh37	21	39775475	39775475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	78	678	0	ENST00000288319.7:c.545G>A	p.Ser182Asn	p.S182N	ENST00000288319	NM_182918.3	182	aGc/aAc																																																																															
TET1	80312	MSKCC	GRCh37	10	70333092	70333092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	100	625	0	ENST00000373644.4:c.997G>T	p.Gly333Cys	p.G333C	ENST00000373644	NM_030625.2	333	Ggc/Tgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717647	89717647	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	41	406	0	ENST00000371953.3:c.672A>G	p.Ile224Met	p.I224M	ENST00000371953	NM_000314.4	224	atA/atG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446027	49446027	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	133	1186	0	ENST00000301067.7:c.1439del	p.Pro480LeufsTer450	p.P480Lfs*450	ENST00000301067	NM_003482.3	480	cCt/ct																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987088	36987088	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	193	887	0	ENST00000354822.5:c.601del	p.Ala201ArgfsTer27	p.A201Rfs*27	ENST00000354822	NM_001079668.2	201	Gcg/cg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945577	151945577	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0058251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	45	176	0	ENST00000262189.6:c.1942G>T	p.Glu648Ter	p.E648*	ENST00000262189	NM_170606.2	648	Gaa/Taa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5055702	5055702	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	52	214	0	ENST00000381652.3:c.970A>T	p.Ile324Phe	p.I324F	ENST00000381652	NM_004972.3	324	Att/Ttt																																																																															
FANCC	2176	MSKCC	GRCh37	9	98003000	98003000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	25	293	0	ENST00000289081.3:c.276G>T	p.Trp92Cys	p.W92C	ENST00000289081	NM_000136.2	92	tgG/tgT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0058263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	102	395	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0058263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	157	732	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923059	39923059	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	158	350	0	ENST00000378444.4:c.3649C>T	p.Arg1217Ter	p.R1217*	ENST00000378444	NM_001123385.1	1217	Cga/Tga																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598832	28598832	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs986992433		P-0058263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	92	909	0	ENST00000253063.3:c.392C>T	p.Ser131Phe	p.S131F	ENST00000253063	NM_031459.4	131	tCc/tTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573498	48573499	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0058263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	35	235	0	ENST00000342988.3:c.84dup	p.Gly29ArgfsTer5	p.G29Rfs*5	ENST00000342988	NM_005359.5	28	caa/cAaa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324587	31324587	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	213	559	0	ENST00000412585.2:c.221del	p.Pro74ArgfsTer3	p.P74Rfs*3	ENST00000412585	NM_005514.6	74	cCg/cg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2979406	2979406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	78	654	0	ENST00000396946.4:c.841C>A	p.Gln281Lys	p.Q281K	ENST00000396946	NM_032415.4	281	Cag/Aag																																																																															
TCEB1	6921	MSKCC	GRCh37	8	74858954	74858954	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	67	500	0	ENST00000284811.8:c.250A>G	p.Thr84Ala	p.T84A	ENST00000284811		84	Act/Gct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0058264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	76	299	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0058264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	98	571	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																															
ALK	238	MSKCC	GRCh37	2	30143132	30143132	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1262491330		P-0058264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	58	626	2	ENST00000389048.3:c.394G>T	p.Val132Leu	p.V132L	ENST00000389048	NM_004304.4	132	Gtg/Ttg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88659551	88659551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0058264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	65	323	0	ENST00000372037.3:c.334G>T	p.Asp112Tyr	p.D112Y	ENST00000372037	NM_004329.2	112	Gat/Tat																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223917	36223917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	106	1059	1	ENST00000222270.7:c.6467C>T	p.Pro2156Leu	p.P2156L	ENST00000222270	NM_014727.1	2156	cCa/cTa																																																																															
IDH1	3417	MSKCC	GRCh37	2	209101894	209101894	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0058264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	61	270	0	ENST00000345146.2:c.1155-1G>T		p.X385_splice	ENST00000345146	NM_005896.2	385																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212248546	212248546	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	105	572	0	ENST00000342788.4:c.3721G>T	p.Asp1241Tyr	p.D1241Y	ENST00000342788	NM_005235.2	1241	Gac/Tac																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659919	227659919	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	81	734	1	ENST00000305123.5:c.3536A>T	p.Tyr1179Phe	p.Y1179F	ENST00000305123	NM_005544.2	1179	tAc/tTc																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260211	149260211	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	105	750	1	ENST00000360632.3:c.682C>T	p.Gln228Ter	p.Q228*	ENST00000360632	NM_015472.4	228	Cag/Tag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170106	32170106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	110	1026	0	ENST00000375023.3:c.3502C>A	p.Pro1168Thr	p.P1168T	ENST00000375023	NM_004557.3	1168	Ccc/Acc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032531	47032531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	73	720	0	ENST00000329236.7:c.206G>A	p.Arg69His	p.R69H	ENST00000329236	NM_001204466.1	69	cGt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0058265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	76	157	2	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041662	47041663	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0058265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	98	169	0	ENST00000329236.7:c.1653_1654del	p.Ala553ThrfsTer41	p.A553Tfs*41	ENST00000329236	NM_001204466.1	551	acAGgg/acgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0058266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	36	341	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579346	7579348	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs764486868		P-0058266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	102	770	0	ENST00000269305.4:c.339_341del	p.Phe113del	p.F113del	ENST00000269305	NM_001126112.2	113	ttCTTg/ttg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28602393	28602393	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753200838		P-0058266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	61	456	0	ENST00000241453.7:c.1975A>G	p.Met659Val	p.M659V	ENST00000241453	NM_004119.2	659	Atg/Gtg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45391445	45391445	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	24	326	0	ENST00000262160.6:c.715C>T	p.Gln239Ter	p.Q239*	ENST00000262160	NM_005901.5	239	Caa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087929	27087929	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	60	662	0	ENST00000324856.7:c.2216C>G	p.Pro739Arg	p.P739R	ENST00000324856	NM_006015.4	739	cCt/cGt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78865626	78865626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	64	526	0	ENST00000306801.3:c.2090C>T	p.Pro697Leu	p.P697L	ENST00000306801	NM_020761.2	697	cCa/cTa																																																																															
CDH1	999	MSKCC	GRCh37	16	68835751	68835752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0058278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	45	566	0	ENST00000261769.5:c.343dup	p.Thr115AsnfsTer53	p.T115Nfs*53	ENST00000261769	NM_004360.3	114	-/A																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2199905	2199905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	41	633	0	ENST00000398665.3:c.674C>T	p.Ser225Leu	p.S225L	ENST00000398665	NM_032482.2	225	tCa/tTa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117458	115117458	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0058278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	26	239	0	ENST00000257566.3:c.718-2A>G		p.X240_splice	ENST00000257566	NM_016569.3	240																																																																																
ATRX	546	MSKCC	GRCh37	X	76939961	76939961	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	76	230	0	ENST00000373344.5:c.787T>C	p.Trp263Arg	p.W263R	ENST00000373344	NM_000489.3	263	Tgg/Cgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0058281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	105	326	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0058281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	266	717	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900158	101900158	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	40	198	0	ENST00000374994.4:c.592C>T	p.Gln198Ter	p.Q198*	ENST00000374994	NM_004612.2	198	Cag/Tag																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44514602	44514602	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	124	417	0	ENST00000291552.4:c.554T>C	p.Leu185Pro	p.L185P	ENST00000291552	NM_006758.2	185	cTg/cCg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593558	48593558	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs587781618		P-0058281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	13	165	0	ENST00000342988.3:c.1308+1G>T		p.X436_splice	ENST00000342988	NM_005359.5	436																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10599939	10599939	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1463180402		P-0058281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	38	684	0	ENST00000171111.5:c.1637T>G	p.Phe546Cys	p.F546C	ENST00000171111	NM_203500.1	546	tTc/tGc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38953637	38953637	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	87	157	0	ENST00000357387.3:c.2716T>C	p.Cys906Arg	p.C906R	ENST00000357387	NM_152756.3	906	Tgt/Cgt																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202263	138202263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	139	446	0	ENST00000237289.4:c.2180G>A	p.Cys727Tyr	p.C727Y	ENST00000237289	NM_001270507.1	727	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0058315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	39	366	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175036	112175037	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0058315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	23	205	0	ENST00000257430.4:c.3746dup	p.Cys1249TrpfsTer7	p.C1249Wfs*7	ENST00000257430	NM_000038.5	1249	tgc/tGgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713421	40713421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199947379		P-0058315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	82	1045	4	ENST00000373198.4:c.4094C>T	p.Thr1365Met	p.T1365M	ENST00000373198	NM_133170.3	1365	aCg/aTg																																																																															
PGR	5241	MSKCC	GRCh37	11	100962580	100962580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	46	519	0	ENST00000325455.5:c.1817G>T	p.Arg606Ile	p.R606I	ENST00000325455	NM_001202474.3	606	aGa/aTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0058318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	138	378	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0058318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	21	295	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0058318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	54	495	2	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206651115	206651115	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781821296		P-0058318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1252	85	1262	0	ENST00000367120.3:c.725C>T	p.Pro242Leu	p.P242L	ENST00000367120	NM_014002.3	242	cCg/cTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	82	610	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781440	135781440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs118203542		P-0058318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	111	627	1	ENST00000298552.3:c.1525C>T	p.Arg509Ter	p.R509*	ENST00000298552	NM_001162426.1	509	Cga/Tga																																																																															
STAG2	10735	MSKCC	GRCh37	X	123191804	123191804	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	26	429	0	ENST00000218089.9:c.1393G>T	p.Val465Phe	p.V465F	ENST00000218089	NM_001042749.1	465	Gtt/Ttt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25976421	25976421	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	90	491	0	ENST00000435504.4:c.1124A>G	p.Glu375Gly	p.E375G	ENST00000435504		375	gAa/gGa																																																																															
APC	324	MSKCC	GRCh37	5	112111417	112111420	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	-			P-0058318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	17	246	0	ENST00000257430.4:c.517_520del	p.Pro173Ter	p.P173*	ENST00000257430	NM_000038.5	172	CTTCct/ct																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439906	51439906	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	199	426	0	ENST00000262662.1:c.471G>T	p.Gln157His	p.Q157H	ENST00000262662		157	caG/caT																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100361	8100361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	499	1298	1	ENST00000346208.3:c.335G>T	p.Trp112Leu	p.W112L	ENST00000346208		112	tGg/tTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332222	70332222	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	51	310	0	ENST00000373644.4:c.127A>T	p.Thr43Ser	p.T43S	ENST00000373644	NM_030625.2	43	Act/Tct																																																																															
CBL	867	MSKCC	GRCh37	11	119156232	119156232	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	79	514	0	ENST00000264033.4:c.1897G>C	p.Asp633His	p.D633H	ENST00000264033	NM_005188.3	633	Gat/Cat																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125523664	125523664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	53	250	0	ENST00000428830.2:c.1257G>T	p.Arg419Ser	p.R419S	ENST00000428830	NM_001114121.2	419	agG/agT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441755	49441755	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	209	525	0	ENST00000301067.7:c.4229A>G	p.Asn1410Ser	p.N1410S	ENST00000301067	NM_003482.3	1410	aAc/aGc																																																																															
MDM2	4193	MSKCC	GRCh37	12	69214112	69214112	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	48	253	0	ENST00000462284.1:c.316T>C	p.Tyr106His	p.Y106H	ENST00000462284	NM_002392.5	106	Tat/Cat																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515036	103515036	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	67	311	0	ENST00000355739.4:c.1537G>T	p.Ala513Ser	p.A513S	ENST00000355739	NM_000123.3	513	Gca/Tca																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435418	110435418	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	214	837	1	ENST00000375856.3:c.2983A>T	p.Ser995Cys	p.S995C	ENST00000375856	NM_003749.2	995	Agc/Tgc																																																																															
BLM	641	MSKCC	GRCh37	15	91333910	91333910	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs367543034		P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	171	431	0	ENST00000355112.3:c.2855G>T	p.Gly952Val	p.G952V	ENST00000355112	NM_000057.2	952	gGg/gTg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14020460	14020460	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	78	336	0	ENST00000311895.7:c.431A>T	p.Gln144Leu	p.Q144L	ENST00000311895	NM_005236.2	144	cAa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577032	7577032	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs786202055		P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	303	922	0	ENST00000269305.4:c.906del	p.Ser303AlafsTer42	p.S303Afs*42	ENST00000269305	NM_001126112.2	302	ggG/gg																																																																															
STK11	6794	MSKCC	GRCh37	19	1222982	1222982	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T	rs727504172		P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	219	682	1	ENST00000326873.7:c.921-2A>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10610265	10610265	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	165	1031	0	ENST00000171111.5:c.445G>A	p.Glu149Lys	p.E149K	ENST00000171111	NM_203500.1	149	Gag/Aag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223444	36223445	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	323	1285	0	ENST00000222270.7:c.5994_5995delinsTT	p.Gly1999Trp	p.G1999W	ENST00000222270	NM_014727.1	1998	ctGGgg/ctTTgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41514493	41514493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	122	518	1	ENST00000373198.4:c.168G>T	p.Gln56His	p.Q56H	ENST00000373198	NM_133170.3	56	caG/caT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356209	66356209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs745740802		P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	237	595	0	ENST00000273854.3:c.1288del	p.Asp430IlefsTer15	p.D430Ifs*15	ENST00000273854	NM_004439.5	430	Gat/at																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356263	66356263	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	234	560	0	ENST00000273854.3:c.1234G>T	p.Val412Phe	p.V412F	ENST00000273854	NM_004439.5	412	Gtc/Ttc																																																																															
TET2	54790	MSKCC	GRCh37	4	106155649	106155649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	180	286	0	ENST00000380013.4:c.550G>T	p.Glu184Ter	p.E184*	ENST00000380013	NM_001127208.2	184	Gag/Tag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295348	1295348	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	92	590	1				ENST00000310581	NM_198253.2																																																																																	
APC	324	MSKCC	GRCh37	5	112174736	112174736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	140	218	0	ENST00000257430.4:c.3445G>T	p.Glu1149Ter	p.E1149*	ENST00000257430	NM_000038.5	1149	Gaa/Taa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131923780	131923786	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGTAGG	GGGTAGG	AATAA			P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	25	207	0	ENST00000265335.6:c.1050_1051+5delinsAATAA		p.X350_splice	ENST00000265335		350																																																																																
MDC1	9656	MSKCC	GRCh37	6	30671952	30671952	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200530869		P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	142	891	0	ENST00000376406.3:c.5008G>A	p.Val1670Ile	p.V1670I	ENST00000376406	NM_014641.2	1670	Gtc/Atc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168659	32168659	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	724	884	0	ENST00000375023.3:c.4264G>C	p.Glu1422Gln	p.E1422Q	ENST00000375023	NM_004557.3	1422	Gag/Cag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157519989	157519989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	130	759	0	ENST00000346085.5:c.4058C>T	p.Ser1353Leu	p.S1353L	ENST00000346085	NM_020732.3	1353	tCg/tTg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946167	13946167	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	112	418	0	ENST00000405192.2:c.929G>T	p.Gly310Val	p.G310V	ENST00000405192	NM_001163147.1	310	gGa/gTa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526604	106526604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	145	346	0	ENST00000359195.3:c.2897G>A	p.Gly966Glu	p.G966E	ENST00000359195	NM_002649.2	966	gGg/gAg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53246342	53246342	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	255	339	1	ENST00000375401.3:c.640A>T	p.Lys214Ter	p.K214*	ENST00000375401	NM_004187.3	214	Aag/Tag																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928690	49928691	+	missense_variant	Missense_Mutation	DNP	CT	CT	AC			P-0058321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	161	1082	2	ENST00000296474.3:c.3583_3584delinsGT	p.Ser1195Val	p.S1195V	ENST00000296474	NM_002447.2	1195	AGc/GTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0058327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	167	552	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0058327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	141	657	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786202962		P-0058327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	503	1161	1	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
AR	367	MSKCC	GRCh37	X	66765779	66765779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1244	576	1452	1	ENST00000374690.3:c.791G>A	p.Arg264Gln	p.R264Q	ENST00000374690	NM_000044.3	264	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	48	365	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185198027	185198027	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1184685567		P-0058327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	44	521	0	ENST00000265026.3:c.2509C>T	p.Arg837Cys	p.R837C	ENST00000265026	NM_004721.4	837	Cgc/Tgc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212615384	212615384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	65	737	0	ENST00000342788.4:c.602C>T	p.Thr201Ile	p.T201I	ENST00000342788	NM_005235.2	201	aCa/aTa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438164	56438164	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0058327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	519	1242	0	ENST00000407977.2:c.829G>T	p.Glu277Ter	p.E277*	ENST00000407977		277	Gag/Tag																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88659591	88659592	+	missense_variant	Missense_Mutation	DNP	GT	GT	TG			P-0058327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	437	702	0	ENST00000372037.3:c.374_375delinsTG	p.Cys125Leu	p.C125L	ENST00000372037	NM_004329.2	125	tGT/tTG																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858466	9858466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	150	810	1	ENST00000330684.3:c.2935G>T	p.Val979Leu	p.V979L	ENST00000330684	NM_001134407.1	979	Gta/Tta																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267026	41267026	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	50	701	0	ENST00000349496.5:c.697A>C	p.Lys233Gln	p.K233Q	ENST00000349496	NM_001904.3	233	Aag/Cag																																																																															
CD274	29126	MSKCC	GRCh37	9	5462945	5462945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	241	511	0	ENST00000381577.3:c.506G>A	p.Ser169Asn	p.S169N	ENST00000381577	NM_014143.3	169	aGc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0058328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	478	919	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0058328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	314	559	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013691	12013691	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0058328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	99	459	0	ENST00000353533.5:c.634-1G>C		p.X212_splice	ENST00000353533	NM_003010.3	212																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0058328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	459	819	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584602	48584602	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	19	650	0	ENST00000342988.3:c.775del	p.Thr259LeufsTer77	p.T259Lfs*77	ENST00000342988	NM_005359.5	259	Act/ct																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230792	66230792	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	196	502	0	ENST00000273854.3:c.2179A>G	p.Ile727Val	p.I727V	ENST00000273854	NM_004439.5	727	Atc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0058329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	667	1123	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	195	437	1	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332868	152332868	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745723014		P-0058329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	291	575	3	ENST00000206249.3:c.1174G>A	p.Val392Ile	p.V392I	ENST00000206249	NM_000125.3	392	Gtc/Atc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678783	52678784	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0058329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	250	340	0	ENST00000394830.3:c.835dup	p.Ile279AsnfsTer8	p.I279Nfs*8	ENST00000394830	NM_018313.4	279	ata/aAta																																																																															
APC	324	MSKCC	GRCh37	5	112170682	112170682	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1064794226		P-0058329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	152	489	0	ENST00000257430.4:c.1778G>A	p.Trp593Ter	p.W593*	ENST00000257430	NM_000038.5	593	tGg/tAg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856619	111856631	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCGCCGGGCCC	CTGCGCCGGGCCC	-			P-0058329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	324	205	0	ENST00000341259.2:c.671_683del	p.Leu224ArgfsTer50	p.L224Rfs*50	ENST00000341259	NM_005475.2	224	CTGCGCCGGGCCCcg/cg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477081	67477083	+	inframe_deletion	In_Frame_Del	DEL	CTA	CTA	-			P-0058329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	476	689	1	ENST00000327367.4:c.892_894del	p.Tyr298del	p.Y298del	ENST00000327367	NM_005902.3	296	ctCTAc/ctc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410209	63410209	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	172	1102	0	ENST00000330258.3:c.2958G>C	p.Gln986His	p.Q986H	ENST00000330258	NM_152424.3	986	caG/caC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0058334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	311	416	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0058334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	599	898	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857449	9857449	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774419037		P-0058334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	487	736	1	ENST00000330684.3:c.3952C>T	p.Arg1318Trp	p.R1318W	ENST00000330684	NM_001134407.1	1318	Cgg/Tgg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30322767	30322767	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	63	347	0	ENST00000322652.5:c.1780G>T	p.Glu594Ter	p.E594*	ENST00000322652	NM_015355.2	594	Gaa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575092	48575093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0058334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	292	464	0	ENST00000342988.3:c.289dup	p.Arg97ProfsTer7	p.R97Pfs*7	ENST00000342988	NM_005359.5	96	gcc/gCcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0058338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	23	780	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0058338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	54	290	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
FH	2271	MSKCC	GRCh37	1	241682991	241682991	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1226883651		P-0058338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	181	601	0	ENST00000366560.3:c.32C>T	p.Ser11Leu	p.S11L	ENST00000366560	NM_000143.3	11	tCg/tTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685270	89685271	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0058338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	40	283	0	ENST00000371953.3:c.165_166del	p.Arg55SerfsTer7	p.R55Sfs*7	ENST00000371953	NM_000314.4	55	agGTtt/agtt																																																																															
CBL	867	MSKCC	GRCh37	11	119103270	119103270	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	216	575	0	ENST00000264033.4:c.308A>T	p.Glu103Val	p.E103V	ENST00000264033	NM_005188.3	103	gAg/gTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931588		P-0058347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	300	558	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	369	727	1	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528244	157528244	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762342896		P-0058347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	395	871	0	ENST00000346085.5:c.5969G>A	p.Arg1990Gln	p.R1990Q	ENST00000346085	NM_020732.3	1990	cGa/cAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426324	49426324	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	670	1313	0	ENST00000301067.7:c.12164del	p.Pro4055LeufsTer11	p.P4055Lfs*11	ENST00000301067	NM_003482.3	4055	cCt/ct																																																																															
LATS2	26524	MSKCC	GRCh37	13	21555774	21555774	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	468	874	0	ENST00000382592.4:c.2496A>T	p.Arg832Ser	p.R832S	ENST00000382592	NM_014572.2	832	agA/agT																																																																															
SLX4	84464	MSKCC	GRCh37	16	3651186	3651186	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	584	951	0	ENST00000294008.3:c.957G>T	p.Leu319Phe	p.L319F	ENST00000294008	NM_032444.2	319	ttG/ttT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984790	72984790	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	547	1038	0	ENST00000268489.5:c.2794G>C	p.Glu932Gln	p.E932Q	ENST00000268489	NM_006885.3	932	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs864622237		P-0058349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	552	895	2	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac																																																																															
YES1	7525	MSKCC	GRCh37	18	745983	745983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	137	646	0	ENST00000314574.4:c.539G>T	p.Gly180Val	p.G180V	ENST00000314574	NM_005433.3	180	gGt/gTt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210766	2210766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	532	921	0	ENST00000398665.3:c.1266del	p.Glu423SerfsTer66	p.E423Sfs*66	ENST00000398665	NM_032482.2	421	aaC/aa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50920325	50920325	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	612	1416	0	ENST00000440232.2:c.3094del	p.Arg1032GlyfsTer13	p.R1032Gfs*13	ENST00000440232	NM_002691.3	1031	Ccc/cc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672696	86672698	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGC	AGC	AT			P-0058349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	109	315	1	ENST00000274376.6:c.2185-1_2185delinsT		p.X729_splice	ENST00000274376	NM_002890.2	729																																																																																
BCOR	54880	MSKCC	GRCh37	X	39937121	39937121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	581	1117	0	ENST00000378444.4:c.62G>T	p.Arg21Leu	p.R21L	ENST00000378444	NM_001123385.1	21	cGc/cTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412120	63412120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	634	1259	0	ENST00000330258.3:c.1047G>C	p.Gln349His	p.Q349H	ENST00000330258	NM_152424.3	349	caG/caC																																																																															
STAG2	10735	MSKCC	GRCh37	X	123189998	123189998	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	232	662	0	ENST00000218089.9:c.1217C>A	p.Thr406Asn	p.T406N	ENST00000218089	NM_001042749.1	406	aCt/aAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0058370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	69	421	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0058370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	263	867	9	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911535	101911535	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113605875		P-0058370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	92	422	1	ENST00000374994.4:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000374994	NM_004612.2	487	cGg/cAg																																																																															
JUN	3725	MSKCC	GRCh37	1	59248633	59248634	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0058370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	160	1127	2	ENST00000371222.2:c.109_110del	p.Ser37HisfsTer69	p.S37Hfs*69	ENST00000371222	NM_002228.3	37	AGc/c																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100998	41100998	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772057709		P-0058370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	244	957	8	ENST00000373198.4:c.1358G>A	p.Arg453His	p.R453H	ENST00000373198	NM_133170.3	453	cGc/cAc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987204	36987204	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1117	65	1072	2	ENST00000354822.5:c.485C>G	p.Ala162Gly	p.A162G	ENST00000354822	NM_001079668.2	162	gCg/gGg																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62290852	62290852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	77	550	0	ENST00000508582.2:c.97C>T	p.Gln33Ter	p.Q33*	ENST00000508582		33	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0058373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	110	291	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0058373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	179	564	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0058373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	115	310	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0058373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	103	249	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
MGA	23269	MSKCC	GRCh37	15	42041571	42041571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	163	420	0	ENST00000219905.7:c.5767del	p.Thr1923LeufsTer46	p.T1923Lfs*46	ENST00000219905	NM_001164273.1	1922	atA/at																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40747114	40747114	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	46	528	0	ENST00000373198.4:c.2968T>C	p.Phe990Leu	p.F990L	ENST00000373198	NM_133170.3	990	Ttt/Ctt																																																																															
KDR	3791	MSKCC	GRCh37	4	55972871	55972871	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	60	234	0	ENST00000263923.4:c.1519A>G	p.Ile507Val	p.I507V	ENST00000263923	NM_002253.2	507	Att/Gtt																																																																															
APC	324	MSKCC	GRCh37	5	112175735	112175750	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCCAGATGCTGATA	CTTCCAGATGCTGATA	-			P-0058373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	140	227	0	ENST00000257430.4:c.4447_4462del	p.Pro1483TyrfsTer19	p.P1483Yfs*19	ENST00000257430	NM_000038.5	1482	CTTCCAGATGCTGATAct/ct																																																																															
RB1	5925	MSKCC	GRCh37	13	48881543	48881543	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1131690907		P-0058376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	36	102	0	ENST00000267163.4:c.264+1G>A		p.X88_splice	ENST00000267163	NM_000321.2	88																																																																																
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587780075		P-0058376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	250	678	0	ENST00000269305.4:c.800G>C	p.Arg267Pro	p.R267P	ENST00000269305	NM_001126112.2	267	cGg/cCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0058376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	87	293	0	ENST00000256078.4:c.34_35delinsCT	p.Gly12Leu	p.G12L	ENST00000256078	NM_033360.2	12	GGt/CTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879277	151879277	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs956673837		P-0058376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	171	560	0	ENST00000262189.6:c.5668C>T	p.Arg1890Ter	p.R1890*	ENST00000262189	NM_170606.2	1890	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420631	49420631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	329	916	1	ENST00000301067.7:c.15118G>T	p.Asp5040Tyr	p.D5040Y	ENST00000301067	NM_003482.3	5040	Gac/Tac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717633	89717634	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0058376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	87	305	0	ENST00000371953.3:c.659_660dup	p.Lys221Ter	p.K221*	ENST00000371953	NM_000314.4	220	cta/cTAta																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974704	21974704	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	210	611	0	ENST00000304494.5:c.123del	p.Asn42IlefsTer11	p.N42Ifs*11	ENST00000304494	NM_000077.4	41	ccG/cc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900327	101900328	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0058376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	79	165	0	ENST00000374994.4:c.762dup	p.Arg255ThrfsTer3	p.R255Tfs*3	ENST00000374994	NM_004612.2	254	tta/ttAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0058383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	103	332	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0058383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1919	434	1011	1	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56488315	56488315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1085	256	514	0	ENST00000267101.3:c.1834C>T	p.Pro612Ser	p.P612S	ENST00000267101	NM_001982.3	612	Ccc/Tcc																																																																															
CIC	23152	MSKCC	GRCh37	19	42794636	42794637	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0058383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1785	164	939	1	ENST00000575354.2:c.1721dup	p.Pro575ThrfsTer115	p.P575Tfs*115	ENST00000575354	NM_015125.3	572	-/C																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128044579	128044579	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1298	168	480	0	ENST00000285398.2:c.1042del	p.Leu348TrpfsTer4	p.L348Wfs*4	ENST00000285398	NM_000122.1	348	Ctg/tg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0058401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	1263	377	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0058401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	114	870	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0058420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	93	448	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508133	106508133	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1346474355		P-0058420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	80	495	0	ENST00000359195.3:c.127G>A	p.Val43Met	p.V43M	ENST00000359195	NM_002649.2	43	Gtg/Atg																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792557	33792557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	33	71	0	ENST00000498907.2:c.764G>T	p.Gly255Val	p.G255V	ENST00000498907	NM_004364.3	255	gGg/gTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599944	10599944	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	275	1000	0	ENST00000171111.5:c.1632del	p.Trp544Ter	p.W544*	ENST00000171111	NM_203500.1	544	tgG/tg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163318779	163318779	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	82	430	0	ENST00000271452.3:c.1169G>T	p.Arg390Leu	p.R390L	ENST00000271452	NM_145697.2	390	cGa/cTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29663821	29663821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	147	698	0	ENST00000358273.4:c.6316G>T	p.Val2106Phe	p.V2106F	ENST00000358273	NM_001042492.2	2106	Gtt/Ttt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589616	67589616	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	52	242	0	ENST00000274335.5:c.1379G>T	p.Ser460Ile	p.S460I	ENST00000274335		460	aGt/aTt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509811	106509811	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	178	792	0	ENST00000359195.3:c.1805A>C	p.Glu602Ala	p.E602A	ENST00000359195	NM_002649.2	602	gAa/gCa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410586	63410586	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	200	1016	0	ENST00000330258.3:c.2581G>T	p.Gly861Cys	p.G861C	ENST00000330258	NM_152424.3	861	Ggc/Tgc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78796008	78796009	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	T			P-0058420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	195	894	0	ENST00000306801.3:c.898_899delinsT	p.Gly300SerfsTer3	p.G300Sfs*3	ENST00000306801	NM_020761.2	300	GGc/Tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0058427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	348	408	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777134	9777134	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1445282622		P-0058427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	118	992	1	ENST00000377346.4:c.898C>T	p.Arg300Cys	p.R300C	ENST00000377346	NM_005026.3	300	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591812	48591813	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0058427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	84	473	0	ENST00000342988.3:c.976_977insAA	p.Ile326LysfsTer11	p.I326Kfs*11	ENST00000342988	NM_005359.5	325	-/AA																																																																															
ATR	545	MSKCC	GRCh37	3	142231233	142231233	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	49	503	0	ENST00000350721.4:c.4721G>T	p.Cys1574Phe	p.C1574F	ENST00000350721	NM_001184.3	1574	tGt/tTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151843683	151843684	+	stop_gained,frameshift_variant,splice_region_variant	Nonsense_Mutation	INS	-	-	TGATTCCGCTA			P-0057845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	38	257	0	ENST00000262189.6:c.14021_14031dup	p.Leu4678Ter	p.L4678*	ENST00000262189	NM_170606.2	4677	-/TAGCGGAATCA																																																																															
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs864622007		P-0058076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	133	406	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006098	22006098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	97	1081	1	ENST00000276925.6:c.305C>T	p.Ala102Val	p.A102V	ENST00000276925	NM_004936.3	102	gCc/gTc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249788	110249788	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	137	1235	4	ENST00000374672.4:c.887A>G	p.Asn296Ser	p.N296S	ENST00000374672	NM_004235.4	296	aAt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs483352695		P-0056664-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			601	16	501	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0057063-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			350	11	236	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220698	1220698	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057063-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1373	33	748	1	ENST00000326873.7:c.716G>A	p.Trp239Ter	p.W239*	ENST00000326873	NM_000455.4	239	tGg/tAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0057388-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			396	123	546	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0057388-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			470	295	953	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
CIC	23152	MSKCC	GRCh37	19	42797425	42797425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057388-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			816	50	1356	0	ENST00000575354.2:c.3787G>A	p.Glu1263Lys	p.E1263K	ENST00000575354	NM_015125.3	1263	Gag/Aag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850721	63850723	+	missense_variant	Missense_Mutation	ONP	ATC	ATC	GTG			P-0057388-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			288	78	378	0	ENST00000279873.7:c.1499_1501delinsGTG	p.Tyr500_Gln501delinsCysGlu	p.Y500_Q501delinsCE	ENST00000279873	NM_032199.2	500	tATCag/tGTGag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0057575-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			263	66	423	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
STK11	6794	MSKCC	GRCh37	19	1219336	1219336	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057575-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	101	709	0	ENST00000326873.7:c.388G>T	p.Glu130Ter	p.E130*	ENST00000326873	NM_000455.4	130	Gag/Tag																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520180	9520180	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057575-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			313	27	427	0	ENST00000353224.5:c.2089C>A	p.His697Asn	p.H697N	ENST00000353224	NM_177990.2	697	Cat/Aat																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602485	10602488	+	frameshift_variant	Frame_Shift_Del	DEL	GGCC	GGCC	-			P-0057575-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			294	88	800	0	ENST00000171111.5:c.1090_1093del	p.Gly364TrpfsTer35	p.G364Wfs*35	ENST00000171111	NM_203500.1	364	GGCCtg/tg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998685	100998685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057575-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			330	98	770	0	ENST00000325455.5:c.1117G>T	p.Ala373Ser	p.A373S	ENST00000325455	NM_001202474.3	373	Gcg/Tcg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266918	18266918	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057575-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			141	42	270	0	ENST00000222254.8:c.229T>G	p.Phe77Val	p.F77V	ENST00000222254	NM_005027.3	77	Ttc/Gtc																																																																															
ALK	238	MSKCC	GRCh37	2	30142907	30142908	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0057575-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	73	886	2	ENST00000389048.3:c.618_619delinsTA	p.Ala207Thr	p.A207T	ENST00000389048	NM_004304.4	206	gcGGca/gcTAca																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212570063	212570063	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057575-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			175	33	360	0	ENST00000342788.4:c.1178G>C	p.Arg393Pro	p.R393P	ENST00000342788	NM_005235.2	393	cGg/cCg																																																																															
TERT	7015	MSKCC	GRCh37	5	1253893	1253893	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs749874887		P-0057575-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			303	143	787	0	ENST00000310581.5:c.3349G>T	p.Ala1117Ser	p.A1117S	ENST00000310581	NM_198253.2	1117	Gcc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0057576-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	153	380	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1131691013		P-0057576-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			257	148	934	1	ENST00000269305.4:c.389T>C	p.Leu130Pro	p.L130P	ENST00000269305	NM_001126112.2	130	cTc/cCc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971047	21971047	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057576-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			321	46	634	0	ENST00000304494.5:c.311T>G	p.Leu104Arg	p.L104R	ENST00000304494	NM_000077.4	104	cTg/cGg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732918	30732919	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0057576-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	75	435	0	ENST00000359013.4:c.1608_1609dup	p.Met537ArgfsTer7	p.M537Rfs*7	ENST00000359013	NM_001024847.2	536	cag/cAGag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0057581-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			291	366	317	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs387906846		P-0057581-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			658	122	566	1	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																															
CDH1	999	MSKCC	GRCh37	16	68857311	68857312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0057581-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			318	77	360	0	ENST00000261769.5:c.1947dup	p.Ile650TyrfsTer13	p.I650Yfs*13	ENST00000261769	NM_004360.3	649	tct/tcTt																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073739	8073739	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1361059014		P-0057581-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			405	72	333	1	ENST00000377482.5:c.920C>T	p.Ser307Leu	p.S307L	ENST00000377482	NM_018948.3	307	tCg/tTg																																																																															
BBC3	27113	MSKCC	GRCh37	19	47730006	47730006	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057581-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			480	63	366	0	ENST00000449228.1:c.383C>A	p.Ser128Ter	p.S128*	ENST00000449228	NM_001127240.2	128	tCa/tAa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982328	25982373	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTAAGGAGTTCAATGACGCACCTGTCGATCTACCTCTGGGAGTA	TCTTAAGGAGTTCAATGACGCACCTGTCGATCTACCTCTGGGAGTA	CCT			P-0057581-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			209	56	247	1	ENST00000435504.4:c.917_939+23delinsAGG		p.X306_splice	ENST00000435504		306																																																																																
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0057585-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			677	62	481	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0057585-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			891	120	561	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29586089	29586089	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057585-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			504	54	283	0	ENST00000358273.4:c.4372G>C	p.Glu1458Gln	p.E1458Q	ENST00000358273	NM_001042492.2	1458	Gaa/Caa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850636	63850636	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057585-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	43	196	0	ENST00000279873.7:c.1414G>C	p.Glu472Gln	p.E472Q	ENST00000279873	NM_032199.2	472	Gaa/Caa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89371679	89371679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057585-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			937	106	553	1	ENST00000301030.4:c.161G>A	p.Arg54Gln	p.R54Q	ENST00000301030	NM_001256183.1	54	cGa/cAa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138400832	138400832	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057585-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			652	43	341	0	ENST00000289153.2:c.2481G>C	p.Trp827Cys	p.W827C	ENST00000289153	NM_006219.2	827	tgG/tgC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0057784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	45	467	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158626	26158626	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	24	282	0	ENST00000289316.2:c.229G>C	p.Glu77Gln	p.E77Q	ENST00000289316	NM_138720.2	77	Gag/Cag																																																																															
LMO1	4004	MSKCC	GRCh37	11	8251907	8251907	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773156387		P-0057784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	80	784	1	ENST00000335790.3:c.170G>A	p.Arg57His	p.R57H	ENST00000335790	NM_002315.2	57	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-			P-0057784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	165	719	0	ENST00000269305.4:c.376-2del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
TBX3	6926	MSKCC	GRCh37	12	115112482	115112482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	151	831	1	ENST00000257566.3:c.1258G>A	p.Glu420Lys	p.E420K	ENST00000257566	NM_016569.3	420	Gag/Aag																																																																															
CD79A	973	MSKCC	GRCh37	19	42383136	42383136	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	43	637	0	ENST00000221972.3:c.156C>G	p.Phe52Leu	p.F52L	ENST00000221972	NM_021601.3	52	ttC/ttG																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31386288	31386288	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	39	819	0	ENST00000328111.2:c.1513G>C	p.Glu505Gln	p.E505Q	ENST00000328111	NM_006892.3	505	Gag/Cag																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31390217	31390217	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	38	475	0	ENST00000328111.2:c.2172C>G	p.Ile724Met	p.I724M	ENST00000328111	NM_006892.3	724	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7579312	7579312	+	splice_region_variant,synonymous_variant	Splice_Region	SNP	C	C	T	rs55863639		P-0057787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	52	483	0	ENST00000269305.4:c.375G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125	acG/acA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0057787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	40	376	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591931	48591931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	40	338	0	ENST00000342988.3:c.1094G>A	p.Gly365Asp	p.G365D	ENST00000342988	NM_005359.5	365	gGt/gAt																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14303157	14303157	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782079709		P-0057787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	48	401	0	ENST00000256196.4:c.518G>A	p.Arg173Gln	p.R173Q	ENST00000256196		173	cGg/cAg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190670387	190670389	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0057787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	28	324	0	ENST00000441310.2:c.329_331del	p.Thr110del	p.T110del	ENST00000441310	NM_000534.4	109	ACA/-																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620705	52620705	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0057787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	30	201	0	ENST00000394830.3:c.3049-1G>C		p.X1017_splice	ENST00000394830	NM_018313.4	1017																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0057792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	132	272	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0057792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	41	417	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0057792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	102	259	0				ENST00000310581	NM_198253.2																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0057792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	12	229	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0057792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	255	632	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112175322	112175322	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs1114167578		P-0057792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	57	176	0	ENST00000257430.4:c.4031C>G	p.Ser1344Ter	p.S1344*	ENST00000257430	NM_000038.5	1344	tCa/tGa																																																																															
TP63	8626	MSKCC	GRCh37	3	189526268	189526268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	64	494	1	ENST00000264731.3:c.532G>A	p.Asp178Asn	p.D178N	ENST00000264731	NM_003722.4	178	Gac/Aac																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856056	111856056	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs574829930		P-0057792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	126	493	3	ENST00000341259.2:c.107C>T	p.Ala36Val	p.A36V	ENST00000341259	NM_005475.2	36	gCg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879277	151879277	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs956673837		P-0057792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	39	348	1	ENST00000262189.6:c.5668C>T	p.Arg1890Ter	p.R1890*	ENST00000262189	NM_170606.2	1890	Cga/Tga																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266033	41266838	+	splice_donor_variant,splice_acceptor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	GGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGTGCAATCCCTGAACTGACAAAACTGCTAAATGACGAGGACCAGGTAAGCAATGACATAGCTAGCTTTTTAGTCTGCTTTGAAGTAAATGCTCAAGGGGAGTAGTTTCAGAATGTCTACCCAATACCAGTACTTGAAAACTAACGATGTTTCTGAATTCCTGTATTACAGGTGGTGGTTAATAA	GGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGTGCAATCCCTGAACTGACAAAACTGCTAAATGACGAGGACCAGGTAAGCAATGACATAGCTAGCTTTTTAGTCTGCTTTGAAGTAAATGCTCAAGGGGAGTAGTTTCAGAATGTCTACCCAATACCAGTACTTGAAAACTAACGATGTTTCTGAATTCCTGTATTACAGGTGGTGGTTAATAA	-			P-0057792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	25	210	0	ENST00000349496.5:c.32_511del		p.X11_splice	ENST00000349496	NM_001904.3	11	ttGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGTGCAATCCCTGAACTGACAAAACTGCTAAATGACGAGGACCAGGTAAGCAATGACATAGCTAGCTTTTTAGTCTGCTTTGAAGTAAATGCTCAAGGGGAGTAGTTTCAGAATGTCTACCCAATACCAGTACTTGAAAACTAACGATGTTTCTGAATTCCTGTATTACAGGTGGTGGTTAATAAg/ttg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745597	162745597	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748984839		P-0057793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	119	300	0	ENST00000367921.3:c.2012C>T	p.Pro671Leu	p.P671L	ENST00000367921	NM_006182.2	671	cCc/cTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711874	89711874	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0057793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	106	254	0	ENST00000371953.3:c.493-1G>T		p.X165_splice	ENST00000371953	NM_000314.4	165																																																																																
TP53	7157	MSKCC	GRCh37	17	7577803	7578469	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTAGCTGGGACTACAGGTGCCCAGCACCACGCCCGGCTAATTTTTTTTTGTATTTTTCAGTAGAGACGGGGTTTCACCGTTAGCCAGGATGGTCTCGATCTCCCAACCTCGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCCAGCCAAGCAGGGGAGGCCCTTAGCCTCTGTAAGCTTCAGTTTTTTCAACTGTGCAATAGTTAAACCCATTTACTTTGCACATCTCATGGGGTTATAGGGAGGTCAAATAAGCAGCAGGAGAAAGCCCCCCTACTGCTCACCTGGAGGGCCACTGACAACCACCCTTAACCCCTCCTCCCAGAGACCCCAGTTGCAAACCAGACCTCAGGCGGCTCATAGGGCACCACCACACTATGTCGAAAAGTGTTTCTGTCATCCAAATACTCCACACGCAAATTTCCTTCCACTCGGATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGC	AGTAGCTGGGACTACAGGTGCCCAGCACCACGCCCGGCTAATTTTTTTTTGTATTTTTCAGTAGAGACGGGGTTTCACCGTTAGCCAGGATGGTCTCGATCTCCCAACCTCGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCCAGCCAAGCAGGGGAGGCCCTTAGCCTCTGTAAGCTTCAGTTTTTTCAACTGTGCAATAGTTAAACCCATTTACTTTGCACATCTCATGGGGTTATAGGGAGGTCAAATAAGCAGCAGGAGAAAGCCCCCCTACTGCTCACCTGGAGGGCCACTGACAACCACCCTTAACCCCTCCTCCCAGAGACCCCAGTTGCAAACCAGACCTCAGGCGGCTCATAGGGCACCACCACACTATGTCGAAAAGTGTTTCTGTCATCCAAATACTCCACACGCAAATTTCCTTCCACTCGGATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGC	-			P-0057793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			5	158	31	0	ENST00000269305.4:c.461_673-195del		p.X154_splice	ENST00000269305	NM_001126112.2	154																																																																																
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0057818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	39	464	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7579361	7579361	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1064796722		P-0057818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	33	737	0	ENST00000269305.4:c.326T>C	p.Phe109Ser	p.F109S	ENST00000269305	NM_001126112.2	109	tTc/tCc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276307	15276307	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	18	783	0	ENST00000263388.2:c.5687C>G	p.Ser1896Cys	p.S1896C	ENST00000263388	NM_000435.2	1896	tCt/tGt																																																																															
GNA11	2767	MSKCC	GRCh37	19	3121092	3121092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	41	632	0	ENST00000078429.4:c.995C>T	p.Thr332Ile	p.T332I	ENST00000078429	NM_002067.2	332	aCc/aTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0057856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			456	72	401	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0057856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	34	319	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020733	37020733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			598	47	545	0	ENST00000358127.4:c.112C>T	p.Arg38Cys	p.R38C	ENST00000358127	NM_001280556.1	38	Cgc/Tgc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740498	58740498	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs375975790		P-0057856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			593	35	484	0	ENST00000305921.3:c.1403C>G	p.Ser468Ter	p.S468*	ENST00000305921	NM_003620.3	468	tCa/tGa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965247	25965247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			470	36	486	0	ENST00000435504.4:c.3959C>T	p.Pro1320Leu	p.P1320L	ENST00000435504		1320	cCc/cTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168765	56168765	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			430	66	368	0	ENST00000399503.3:c.1619A>T	p.Asn540Ile	p.N540I	ENST00000399503	NM_005921.1	540	aAc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0057933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	368	804	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514495		P-0057933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	44	773	1	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0057933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	31	204	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
APC	324	MSKCC	GRCh37	5	112173730	112173730	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0057933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	43	294	0	ENST00000257430.4:c.2442del	p.Phe814LeufsTer6	p.F814Lfs*6	ENST00000257430	NM_000038.5	813	aaT/aa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520141	9520141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs560752200		P-0057933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	47	451	1	ENST00000353224.5:c.2128G>A	p.Val710Ile	p.V710I	ENST00000353224	NM_177990.2	710	Gtc/Atc																																																																															
LYN	4067	MSKCC	GRCh37	8	56863046	56863046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	137	442	0	ENST00000519728.1:c.313C>T	p.Leu105Phe	p.L105F	ENST00000519728	NM_002350.3	105	Ctt/Ttt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945493	17945493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	96	671	0	ENST00000458235.1:c.2237C>T	p.Ala746Val	p.A746V	ENST00000458235	NM_000215.3	746	gCc/gTc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62324535	62324535	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	514	986	1	ENST00000508582.2:c.2963T>A	p.Phe988Tyr	p.F988Y	ENST00000508582		988	tTt/tAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47127792	47127792	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	42	358	0	ENST00000409792.3:c.5290C>T	p.Gln1764Ter	p.Q1764*	ENST00000409792	NM_014159.6	1764	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0057976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	289	743	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0057976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	163	415	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0057976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	61	299	0	ENST00000257430.4:c.4192_4193del	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0057976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	174	328	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992720	68992720	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182978151		P-0057976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	204	552	0	ENST00000288368.4:c.1685G>A	p.Arg562His	p.R562H	ENST00000288368	NM_024870.2	562	cGt/cAt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554397	141554397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	307	947	1	ENST00000220592.5:c.1754C>T	p.Pro585Leu	p.P585L	ENST00000220592	NM_012154.3	585	cCg/cTg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45371820	45371820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	151	296	0	ENST00000262160.6:c.1171G>A	p.Ala391Thr	p.A391T	ENST00000262160	NM_005901.5	391	Gct/Act																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518381	8518381	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	30	254	0	ENST00000356435.5:c.1010C>A	p.Thr337Lys	p.T337K	ENST00000356435		337	aCa/aAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0057978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	185	354	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0057978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	142	864	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
RB1	5925	MSKCC	GRCh37	13	49030460	49030461	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0057978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	118	287	0	ENST00000267163.4:c.1939_1940del	p.Leu647PhefsTer5	p.L647Ffs*5	ENST00000267163	NM_000321.2	645	acCTct/acct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	268	830	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	138	398	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111854391		P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	47	374	1	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068357	26068357	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	181	347	0	ENST00000435504.4:c.133G>T	p.Glu45Ter	p.E45*	ENST00000435504		45	Gaa/Taa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17118502	17118502	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs879255678		P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	63	849	0	ENST00000285071.4:c.1429C>T	p.Arg477Ter	p.R477*	ENST00000285071	NM_144997.5	477	Cga/Tga																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374245	138374245	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	62	449	0	ENST00000289153.2:c.3199G>T	p.Asp1067Tyr	p.D1067Y	ENST00000289153	NM_006219.2	1067	Gac/Tac																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029218	14029218	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41557814		P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	25	247	0	ENST00000311895.7:c.1429C>T	p.Arg477Trp	p.R477W	ENST00000311895	NM_005236.2	477	Cgg/Tgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557367	187557367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746932852		P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	37	456	0	ENST00000441802.2:c.3995G>A	p.Arg1332His	p.R1332H	ENST00000441802	NM_005245.3	1332	cGc/cAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589618	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519838		P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	91	202	0	ENST00000274335.5:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000274335		461	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624245	89624245	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	64	216	1	ENST00000371953.3:c.19G>T	p.Glu7Ter	p.E7*	ENST00000371953	NM_000314.4	7	Gag/Tag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984773	11984773	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	58	319	0	ENST00000353533.5:c.319G>T	p.Glu107Ter	p.E107*	ENST00000353533	NM_003010.3	107	Gaa/Taa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115251236	115251236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	36	408	0	ENST00000369535.4:c.490C>T	p.Arg164Cys	p.R164C	ENST00000369535	NM_002524.4	164	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432651	49432651	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs727503983		P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	101	1068	0	ENST00000301067.7:c.8488C>T	p.Arg2830Ter	p.R2830*	ENST00000301067	NM_003482.3	2830	Cga/Tga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045136	47045136	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	245	832	1	ENST00000329236.7:c.2143C>T	p.Arg715Ter	p.R715*	ENST00000329236	NM_001204466.1	715	Cga/Tga																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135384	30135384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373748041		P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	42	369	0	ENST00000331968.5:c.434G>A	p.Arg145His	p.R145H	ENST00000331968	NM_002742.2	145	cGt/cAt																																																																															
BLM	641	MSKCC	GRCh37	15	91333930	91333930	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs762354041		P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	44	502	0	ENST00000355112.3:c.2875C>T	p.Arg959Ter	p.R959*	ENST00000355112	NM_000057.2	959	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100975	41100975	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	87	714	2	ENST00000373198.4:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000373198	NM_133170.3	461	Cga/Tga																																																																															
PREX2	80243	MSKCC	GRCh37	8	69028086	69028086	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774652439		P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	69	554	0	ENST00000288368.4:c.3245G>A	p.Ser1082Asn	p.S1082N	ENST00000288368	NM_024870.2	1082	aGc/aAc																																																																															
TET2	54790	MSKCC	GRCh37	4	106155429	106155429	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	54	408	0	ENST00000380013.4:c.330G>T	p.Lys110Asn	p.K110N	ENST00000380013	NM_001127208.2	110	aaG/aaT																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953023	2953023	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754645078		P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1215	68	1035	3	ENST00000396946.4:c.2917C>T	p.Arg973Cys	p.R973C	ENST00000396946	NM_032415.4	973	Cgc/Tgc																																																																															
WT1	7490	MSKCC	GRCh37	11	32438039	32438039	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	47	684	0	ENST00000332351.3:c.998G>T	p.Ser333Ile	p.S333I	ENST00000332351	NM_024426.4	333	aGc/aTc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427558	427558	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	68	443	0	ENST00000399788.2:c.2611T>G	p.Ser871Ala	p.S871A	ENST00000399788	NM_001042603.1	871	Tct/Gct																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779616	3779616	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1094	67	1153	0	ENST00000262367.5:c.5432A>G	p.Lys1811Arg	p.K1811R	ENST00000262367	NM_004380.2	1811	aAg/aGg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303250	15303250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	110	1306	0	ENST00000263388.2:c.278G>T	p.Cys93Phe	p.C93F	ENST00000263388	NM_000435.2	93	tGc/tTc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271883	18271901	+	frameshift_variant	Frame_Shift_Del	DEL	GGATCAGTGGGACACGGCA	GGATCAGTGGGACACGGCA	-			P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	60	861	0	ENST00000222254.8:c.487_505del	p.Asp163ProfsTer18	p.D163Pfs*18	ENST00000222254	NM_005027.3	162	gtGGATCAGTGGGACACGGCA/gt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223203	36223203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1269	97	1445	0	ENST00000222270.7:c.5753C>G	p.Pro1918Arg	p.P1918R	ENST00000222270	NM_014727.1	1918	cCt/cGt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660774	227660774	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770995196		P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	52	919	0	ENST00000305123.5:c.2681G>A	p.Gly894Glu	p.G894E	ENST00000305123	NM_005544.2	894	gGg/gAg																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62322296	62322296	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	219	1152	0	ENST00000508582.2:c.2624A>C	p.Glu875Ala	p.E875A	ENST00000508582		875	gAg/gCg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55151543	55151543	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	28	348	0	ENST00000257290.5:c.2329G>T	p.Glu777Ter	p.E777*	ENST00000257290	NM_006206.4	777	Gaa/Taa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753163	57753163	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	26	320	0	ENST00000274289.3:c.853C>A	p.Leu285Ile	p.L285I	ENST00000274289	NM_006622.3	285	Ctc/Atc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157192772	157192772	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs201653711		P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	31	431	0	ENST00000346085.5:c.1762G>T	p.Glu588Ter	p.E588*	ENST00000346085	NM_020732.3	588	Gaa/Taa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157495141	157495141	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	67	355	0	ENST00000346085.5:c.3026-1G>T		p.X1009_splice	ENST00000346085	NM_020732.3	1009																																																																																
BCOR	54880	MSKCC	GRCh37	X	39934007	39934007	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	60	777	0	ENST00000378444.4:c.592G>C	p.Gly198Arg	p.G198R	ENST00000378444	NM_001123385.1	198	Ggt/Cgt																																																																															
AR	367	MSKCC	GRCh37	X	66942696	66942696	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	40	375	0	ENST00000374690.3:c.2477A>C	p.Lys826Thr	p.K826T	ENST00000374690	NM_000044.3	826	aAa/aCa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs387906846		P-0058006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	85	636	0	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	154	1144	1	ENST00000269305.4:c.476C>A	p.Ala159Asp	p.A159D	ENST00000269305	NM_001126112.2	159	gCc/gAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111494	8111495	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTGGAGG			P-0058006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	96	673	0	ENST00000346208.3:c.981_987dup	p.Arg330LeufsTer24	p.R330Lfs*24	ENST00000346208		327	ctc/ctCTGGAGGc																																																																															
MPL	4352	MSKCC	GRCh37	1	43818420	43818420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	80	747	0	ENST00000372470.3:c.1885C>A	p.Leu629Ile	p.L629I	ENST00000372470	NM_005373.2	629	Cta/Ata																																																																															
PGR	5241	MSKCC	GRCh37	11	100999099	100999099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	117	1084	1	ENST00000325455.5:c.703C>T	p.Pro235Ser	p.P235S	ENST00000325455	NM_001202474.3	235	Ccg/Tcg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104619	69104619	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	167	737	0	ENST00000288368.4:c.4463C>G	p.Ser1488Trp	p.S1488W	ENST00000288368	NM_024870.2	1488	tCg/tGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0058043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	181	257	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577513	7577517	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGA	TGTGA	-			P-0058043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	109	648	0	ENST00000269305.4:c.764_768del	p.Ile255ThrfsTer7	p.I255Tfs*7	ENST00000269305	NM_001126112.2	255	aTCACA/a																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575101	48575101	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0058043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	62	282	0	ENST00000342988.3:c.295T>G	p.Trp99Gly	p.W99G	ENST00000342988	NM_005359.5	99	Tgg/Ggg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0058046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	245	584	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CCND1	595	MSKCC	GRCh37	11	69466022	69466022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	1469	1236	0	ENST00000227507.2:c.860C>T	p.Pro287Leu	p.P287L	ENST00000227507	NM_053056.2	287	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0058046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	460	893	1	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098966	178098966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	158	324	1	ENST00000397062.3:c.79G>T	p.Asp27Tyr	p.D27Y	ENST00000397062	NM_006164.4	27	Gat/Tat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106031	27106032	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0058046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	288	612	0	ENST00000324856.7:c.5643dup	p.Val1882CysfsTer19	p.V1882Cfs*19	ENST00000324856	NM_006015.4	1881	cat/caTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425796	49425814	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTGCCGCTGCATGAGGA	AGCTGCCGCTGCATGAGGA	-			P-0058046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	371	1037	0	ENST00000301067.7:c.12674_12692del	p.Leu4225ArgfsTer47	p.L4225Rfs*47	ENST00000301067	NM_003482.3	4225	cTCCTCATGCAGCGGCAGCTg/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576848	7576877	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTACCTGAAGGGTGAAATATTCTCCATCC	AGTACCTGAAGGGTGAAATATTCTCCATCC	-			P-0058046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	237	734	0	ENST00000269305.4:c.969_993+5del		p.X323_splice	ENST00000269305	NM_001126112.2	323																																																																																
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0058049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	132	590	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0058049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	43	321	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	120	729	0	ENST00000269305.4:c.823T>G	p.Cys275Gly	p.C275G	ENST00000269305	NM_001126112.2	275	Tgt/Ggt																																																																															
APC	324	MSKCC	GRCh37	5	112175944	112175945	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0058049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	24	164	0	ENST00000257430.4:c.4655_4656del	p.Glu1552GlyfsTer6	p.E1552Gfs*6	ENST00000257430	NM_000038.5	1551	aaAGag/aaag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374480	118374480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	30	419	0	ENST00000534358.1:c.7873C>T	p.Arg2625Cys	p.R2625C	ENST00000534358	NM_005933.3	2625	Cgt/Tgt																																																																															
ERF	2077	MSKCC	GRCh37	19	42753078	42753078	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs567417863		P-0058049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	98	1018	0	ENST00000222329.4:c.1186G>A	p.Val396Ile	p.V396I	ENST00000222329	NM_006494.2	396	Gta/Ata																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249504	153249504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	62	382	0	ENST00000281708.4:c.1274G>T	p.Trp425Leu	p.W425L	ENST00000281708	NM_033632.3	425	tGg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579312	7579312	+	splice_region_variant,synonymous_variant	Splice_Region	SNP	C	C	T	rs55863639		P-0058078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	323	668	2	ENST00000269305.4:c.375G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125	acG/acA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0058078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	147	348	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225264		P-0058078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	290	588	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																															
MGA	23269	MSKCC	GRCh37	15	42052632	42052632	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779811318		P-0058078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	268	387	1	ENST00000219905.7:c.7303C>T	p.Arg2435Trp	p.R2435W	ENST00000219905	NM_001164273.1	2435	Cgg/Tgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114799886	114799886	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs377242639		P-0058078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	249	473	0	ENST00000543371.1:c.552+1G>A		p.X184_splice	ENST00000543371	NM_001198531.1	184																																																																																
DNMT1	1786	MSKCC	GRCh37	19	10254542	10254542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	325	597	0	ENST00000340748.4:c.2968C>T	p.Pro990Ser	p.P990S	ENST00000340748		990	Ccc/Tcc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106630	27106633	+	frameshift_variant	Frame_Shift_Del	DEL	TGCC	TGCC	-			P-0058078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	343	679	0	ENST00000324856.7:c.6247_6250del	p.Pro2083SerfsTer51	p.P2083Sfs*51	ENST00000324856	NM_006015.4	2081	TGCCtg/tg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16041516	16041516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	110	218	0	ENST00000268712.3:c.1363C>T	p.His455Tyr	p.H455Y	ENST00000268712	NM_006311.3	455	Cat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112173619	112173623	+	frameshift_variant	Frame_Shift_Del	DEL	AGACA	AGACA	-			P-0058078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	117	261	0	ENST00000257430.4:c.2329_2333del	p.Asp777PhefsTer9	p.D777Ffs*9	ENST00000257430	NM_000038.5	776	atAGACAat/atat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0058079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	105	656	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0058079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	74	257	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0058079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	200	839	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0058079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	122	434	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121912580		P-0058079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	118	409	0	ENST00000342988.3:c.1157G>C	p.Gly386Ala	p.G386A	ENST00000342988	NM_005359.5	386	gGt/gCt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117872	70117872	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	268	947	0	ENST00000245479.2:c.340G>C	p.Val114Leu	p.V114L	ENST00000245479	NM_000346.3	114	Gtg/Ctg																																																																															
APC	324	MSKCC	GRCh37	5	112164663	112164664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0058079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	31	228	0	ENST00000257430.4:c.1742dup	p.Glu582GlyfsTer20	p.E582Gfs*20	ENST00000257430	NM_000038.5	579	-/A																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7983107	7983107	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	243	952	0	ENST00000319144.4:c.907T>C	p.Cys303Arg	p.C303R	ENST00000319144	NM_001139.2	303	Tgc/Cgc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198274631	198274631	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	182	792	0	ENST00000335508.6:c.767C>G	p.Pro256Arg	p.P256R	ENST00000335508	NM_012433.2	256	cCt/cGt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931898	39931898	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	303	514	0	ENST00000378444.4:c.2701C>G	p.Leu901Val	p.L901V	ENST00000378444	NM_001123385.1	901	Ctg/Gtg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412174	63412175	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0058079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	297	581	0	ENST00000330258.3:c.992_993del	p.Ile331AsnfsTer46	p.I331Nfs*46	ENST00000330258	NM_152424.3	331	aTA/a																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119704	70119705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0058079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	160	1003	1	ENST00000245479.2:c.709_710dup	p.Pro238HisfsTer16	p.P238Hfs*16	ENST00000245479	NM_000346.3	236	acc/aCCcc																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2489820	2489820	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	48	953	0	ENST00000355716.4:c.217A>G	p.Thr73Ala	p.T73A	ENST00000355716	NM_003820.2	73	Aca/Gca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89693001	89693001	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	21	384	0	ENST00000371953.3:c.485A>G	p.Asp162Gly	p.D162G	ENST00000371953	NM_000314.4	162	gAc/gGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0058108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	29	351	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0058108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	37	254	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TET1	80312	MSKCC	GRCh37	10	70451473	70451473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	73	631	0	ENST00000373644.4:c.6313C>T	p.Pro2105Ser	p.P2105S	ENST00000373644	NM_030625.2	2105	Cct/Tct																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792467	33792467	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0058108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	70	710	0	ENST00000498907.2:c.854A>T	p.Tyr285Phe	p.Y285F	ENST00000498907	NM_004364.3	285	tAc/tTc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46262305	46262305	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	63	372	0	ENST00000371998.3:c.889A>T	p.Ile297Phe	p.I297F	ENST00000371998		297	Atc/Ttc																																																																															
KDR	3791	MSKCC	GRCh37	4	55976698	55976698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	48	543	0	ENST00000263923.4:c.1127C>T	p.Thr376Ile	p.T376I	ENST00000263923	NM_002253.2	376	aCa/aTa																																																																															
NBN	4683	MSKCC	GRCh37	8	90983481	90983491	+	frameshift_variant	Frame_Shift_Del	DEL	TACTTCCAATA	TACTTCCAATA	-			P-0058108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	50	273	0	ENST00000265433.3:c.612_622del	p.Ile205LysfsTer3	p.I205Kfs*3	ENST00000265433	NM_002485.4	204	tcTATTGGAAGTAaa/tcaa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001317	150001317	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0058110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	48	504	0	ENST00000253339.5:c.2287G>T	p.Glu763Ter	p.E763*	ENST00000253339		763	Gaa/Taa																																																																															
MGA	23269	MSKCC	GRCh37	15	42054422	42054422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	85	338	1	ENST00000219905.7:c.7606G>T	p.Asp2536Tyr	p.D2536Y	ENST00000219905	NM_001164273.1	2536	Gat/Tat																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111470	8111483	+	frameshift_variant	Frame_Shift_Del	DEL	ACTGTCAGACCACC	ACTGTCAGACCACC	-			P-0058110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	167	603	0	ENST00000346208.3:c.958_971del	p.Cys320AsnfsTer27	p.C320Nfs*27	ENST00000346208		319	aACTGTCAGACCACC/a																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0058112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	115	389	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730882026		P-0058112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	188	698	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	32	181	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112174597	112174597	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0058112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	54	376	0	ENST00000257430.4:c.3306C>G	p.Tyr1102Ter	p.Y1102*	ENST00000257430	NM_000038.5	1102	taC/taG																																																																															
BCL6	604	MSKCC	GRCh37	3	187440268	187440268	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760088914		P-0058112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	102	642	1	ENST00000232014.4:c.2099C>T	p.Pro700Leu	p.P700L	ENST00000232014	NM_001130845.1	700	cCg/cTg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193181197	193181197	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0058112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	29	241	0	ENST00000367435.3:c.1033T>C	p.Ser345Pro	p.S345P	ENST00000367435	NM_024529.4	345	Tct/Cct																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575150	48575150	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	57	321	0	ENST00000342988.3:c.344G>T	p.Cys115Phe	p.C115F	ENST00000342988	NM_005359.5	115	tGt/tTt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957470	1957470	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	116	854	0	ENST00000382891.5:c.2569T>C	p.Cys857Arg	p.C857R	ENST00000382891	NM_133335.3	857	Tgc/Cgc																																																																															
KDR	3791	MSKCC	GRCh37	4	55946203	55946203	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	79	586	0	ENST00000263923.4:c.3976C>A	p.Leu1326Ile	p.L1326I	ENST00000263923	NM_002253.2	1326	Ctt/Att																																																																															
NF1	4763	MSKCC	GRCh37	17	29553492	29553492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs768638173		P-0058135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	62	529	0	ENST00000358273.4:c.2041C>T	p.Arg681Ter	p.R681*	ENST00000358273	NM_001042492.2	681	Cga/Tga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347236	89347236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	63	564	0	ENST00000301030.4:c.5714G>A	p.Gly1905Glu	p.G1905E	ENST00000301030	NM_001256183.1	1905	gGg/gAg																																																																															
NF1	4763	MSKCC	GRCh37	17	29483141	29483142	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0058135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	22	310	0	ENST00000358273.4:c.202_203insAA	p.Met68LysfsTer2	p.M68Kfs*2	ENST00000358273	NM_001042492.2	67	-/AA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0058150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	233	749	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264066389		P-0058150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	202	544	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175378	112175378	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0058150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	76	273	0	ENST00000257430.4:c.4087A>T	p.Lys1363Ter	p.K1363*	ENST00000257430	NM_000038.5	1363	Aaa/Taa																																																																															
ATRX	546	MSKCC	GRCh37	X	76891471	76891471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	60	238	0	ENST00000373344.5:c.4634C>T	p.Thr1545Ile	p.T1545I	ENST00000373344	NM_000489.3	1545	aCc/aTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0058157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	652	391	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228794	36228794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	86	936	3	ENST00000222270.7:c.7693C>T	p.Arg2565Cys	p.R2565C	ENST00000222270	NM_014727.1	2565	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577527	7577527	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0058157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	179	691	0	ENST00000269305.4:c.754del	p.Leu252SerfsTer93	p.L252Sfs*93	ENST00000269305	NM_001126112.2	252	Ctc/tc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0058158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	3446	636	1	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0058158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	468	747	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																															
NUP93	9688	MSKCC	GRCh37	16	56852610	56852610	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764790250		P-0058158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	49	542	0	ENST00000308159.5:c.524G>A	p.Arg175Gln	p.R175Q	ENST00000308159	NM_014669.4	175	cGa/cAa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948601	71948601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1863	612	923	1	ENST00000298229.2:c.3313C>T	p.Pro1105Ser	p.P1105S	ENST00000298229	NM_001567.3	1105	Cca/Tca																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30321013	30321013	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	71	400	0	ENST00000322652.5:c.1423A>T	p.Ile475Phe	p.I475F	ENST00000322652	NM_015355.2	475	Atc/Ttc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222032	2222032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1470	213	864	1	ENST00000398665.3:c.2864C>T	p.Ser955Phe	p.S955F	ENST00000398665	NM_032482.2	955	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0058164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	140	363	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs864622237		P-0058164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	160	567	0	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac																																																																															
TET1	80312	MSKCC	GRCh37	10	70441156	70441157	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	A			P-0058164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	74	312	0	ENST00000373644.4:c.4832dup	p.Asn1611LysfsTer3	p.N1611Kfs*3	ENST00000373644	NM_030625.2	1609	gaa/gAaa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782094	9782094	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			568	431	868	0	ENST00000377346.4:c.2121del	p.Lys708SerfsTer7	p.K708Sfs*7	ENST00000377346	NM_005026.3	706	aCc/ac																																																																															
MTOR	2475	MSKCC	GRCh37	1	11217234	11217234	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1031980569		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			357	317	606	0	ENST00000361445.4:c.4444C>T	p.Arg1482Cys	p.R1482C	ENST00000361445	NM_004958.3	1482	Cgc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259480	16259480	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			317	246	488	0	ENST00000375759.3:c.6750del	p.Ala2251GlnfsTer102	p.A2251Qfs*102	ENST00000375759	NM_015001.2	2249	Ccc/cc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			246	192	391	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458147	120458147	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1325403451		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			34	706	686	0	ENST00000256646.2:c.7198C>T	p.Arg2400Ter	p.R2400*	ENST00000256646	NM_024408.3	2400	Cga/Tga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458869	120458869	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755184344		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			45	721	753	1	ENST00000256646.2:c.6476C>T	p.Thr2159Met	p.T2159M	ENST00000256646	NM_024408.3	2159	aCg/aTg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206653377	206653377	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376382831		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1500	508	828	2	ENST00000367120.3:c.1261G>A	p.Ala421Thr	p.A421T	ENST00000367120	NM_014002.3	421	Gcc/Acc																																																																															
RET	5979	MSKCC	GRCh37	10	43613833	43613833	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1017108031		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			468	706	732	1	ENST00000355710.3:c.2297C>T	p.Pro766Leu	p.P766L	ENST00000355710	NM_020975.4	766	cCg/cTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			265	104	176	3	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																															
TET1	80312	MSKCC	GRCh37	10	70406037	70406037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			617	284	528	0	ENST00000373644.4:c.3551G>A	p.Gly1184Asp	p.G1184D	ENST00000373644	NM_030625.2	1184	gGc/gAc																																																																															
TET1	80312	MSKCC	GRCh37	10	70446140	70446140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			237	444	428	0	ENST00000373644.4:c.5080C>T	p.Arg1694Cys	p.R1694C	ENST00000373644	NM_030625.2	1694	Cgc/Tgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692791	89692791	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			388	182	293	0	ENST00000371953.3:c.275A>G	p.Asp92Gly	p.D92G	ENST00000371953	NM_000314.4	92	gAc/gGc																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112771514	112771514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			360	525	453	1	ENST00000369452.4:c.1692del	p.Pro565LeufsTer8	p.P565Lfs*8	ENST00000369452	NM_007373.3	563	Ggg/gg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			383	553	555	2	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913474		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			333	585	511	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																															
HRAS	3265	MSKCC	GRCh37	11	533873	533873	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913496		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			471	856	805	1	ENST00000311189.7:c.183G>T	p.Gln61His	p.Q61H	ENST00000311189		61	caG/caT																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129325	64129325	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs376604355		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			987	407	910	1	ENST00000334205.4:c.757C>T	p.Arg253Trp	p.R253W	ENST00000334205	NM_003942.2	253	Cgg/Tgg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948483	71948484	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1292	520	1054	5	ENST00000298229.2:c.3201dup	p.Ser1068GlnfsTer17	p.S1068Qfs*17	ENST00000298229	NM_001567.3	1065	-/C																																																																															
ETV6	2120	MSKCC	GRCh37	12	12037475	12037475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs724159946		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			258	440	363	0	ENST00000396373.4:c.1106G>A	p.Arg369Gln	p.R369Q	ENST00000396373	NM_001987.4	369	cGg/cAg																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944961	31944961	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1441610501		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			682	346	565	0	ENST00000340398.3:c.140C>T	p.Ala47Val	p.A47V	ENST00000340398	NM_001013699.2	47	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425047	49425047	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778628310		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	464	860	0	ENST00000301067.7:c.13441G>A	p.Glu4481Lys	p.E4481K	ENST00000301067	NM_003482.3	4481	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440431	49440431	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			972	374	761	1	ENST00000301067.7:c.4379del	p.Pro1460HisfsTer46	p.P1460Hfs*46	ENST00000301067	NM_003482.3	1460	cCa/ca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445095	49445095	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			541	739	784	3	ENST00000301067.7:c.2371del	p.Gln791ArgfsTer139	p.Q791Rfs*139	ENST00000301067	NM_003482.3	791	Cag/ag																																																																															
FLT1	2321	MSKCC	GRCh37	13	28959073	28959073	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761475937		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			237	169	348	0	ENST00000282397.4:c.2065G>A	p.Glu689Lys	p.E689K	ENST00000282397	NM_002019.4	689	Gag/Aag																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987204	36987204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			462	430	716	0	ENST00000354822.5:c.485C>T	p.Ala162Val	p.A162V	ENST00000354822	NM_001079668.2	162	gCg/gTg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987211	36987211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			456	383	677	1	ENST00000354822.5:c.478G>T	p.Gly160Cys	p.G160C	ENST00000354822	NM_001079668.2	160	Ggc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42028735	42028735	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			337	267	536	0	ENST00000219905.7:c.4276del	p.Met1426TrpfsTer15	p.M1426Wfs*15	ENST00000219905	NM_001164273.1	1425	Aaa/aa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434817	99434817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			447	334	618	0	ENST00000268035.6:c.904G>A	p.Glu302Lys	p.E302K	ENST00000268035	NM_000875.3	302	Gag/Aag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647423	3647423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755156257		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			470	408	801	2	ENST00000294008.3:c.1640C>T	p.Thr547Met	p.T547M	ENST00000294008	NM_032444.2	547	aCg/aTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346158	89346158	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			200	151	339	0	ENST00000301030.4:c.6792del	p.Ala2265ProfsTer72	p.A2265Pfs*72	ENST00000301030	NM_001256183.1	2264	ccC/cc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89849432	89849432	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587778309		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			473	382	747	0	ENST00000389301.3:c.1549C>T	p.Arg517Trp	p.R517W	ENST00000389301	NM_000135.2	517	Cgg/Tgg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217705	7217707	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs757139280		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			566	251	461	0	ENST00000380728.2:c.220_222del	p.Glu74del	p.E74del	ENST00000380728		74	GAG/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			802	322	609	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882019		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			720	1056	1070	0	ENST00000269305.4:c.455dup	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			504	602	637	8	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
NF1	4763	MSKCC	GRCh37	17	29664455	29664455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			327	514	473	0	ENST00000358273.4:c.6497G>A	p.Gly2166Asp	p.G2166D	ENST00000358273	NM_001042492.2	2166	gGc/gAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29686010	29686010	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757391670		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			189	288	336	0	ENST00000358273.4:c.8137C>T	p.Arg2713Trp	p.R2713W	ENST00000358273	NM_001042492.2	2713	Cgg/Tgg																																																																															
MSI2	124540	MSKCC	GRCh37	17	55693419	55693419	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759162213		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			867	411	729	1	ENST00000284073.2:c.626C>T	p.Ala209Val	p.A209V	ENST00000284073	NM_138962.2	209	gCg/gTg																																																																															
BCL2	596	MSKCC	GRCh37	18	60985819	60985820	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			294	267	405	0	ENST00000333681.4:c.80dup	p.Tyr28LeufsTer125	p.Y28Lfs*125	ENST00000333681		27	ggc/ggGc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619821	1619821	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			638	420	884	2	ENST00000344749.5:c.1125del	p.Gly376ValfsTer18	p.G376Vfs*18	ENST00000344749	NM_001136139.2	375	ccC/cc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5207998	5207998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			549	461	872	0	ENST00000357368.4:c.5713G>A	p.Val1905Met	p.V1905M	ENST00000357368	NM_002850.3	1905	Gtg/Atg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262102	10262102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			437	314	639	2	ENST00000340748.4:c.2189G>A	p.Arg730His	p.R730H	ENST00000340748		730	cGc/cAc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031732	11031732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			594	525	992	1	ENST00000327064.4:c.1544C>T	p.Pro515Leu	p.P515L	ENST00000327064	NM_199141.1	515	cCg/cTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350248	15350248	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			519	504	994	1	ENST00000263377.2:c.3531G>T	p.Lys1177Asn	p.K1177N	ENST00000263377	NM_058243.2	1177	aaG/aaT																																																																															
JAK3	3718	MSKCC	GRCh37	19	17937673	17937673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			408	392	737	0	ENST00000458235.1:c.3254G>A	p.Arg1085Gln	p.R1085Q	ENST00000458235	NM_000215.3	1085	cGg/cAg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266705	18266705	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			473	418	726	1	ENST00000222254.8:c.16G>T	p.Gly6Cys	p.G6C	ENST00000222254	NM_005027.3	6	Ggc/Tgc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905055	50905055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			459	372	687	0	ENST00000440232.2:c.342del	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	113	Ggg/gg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905566	50905566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			662	578	1122	1	ENST00000440232.2:c.694C>A	p.Arg232Ser	p.R232S	ENST00000440232	NM_002691.3	232	Cgt/Agt																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085941	16085941	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs754137452		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			312	280	471	0	ENST00000281043.3:c.1117C>T	p.Arg373Ter	p.R373*	ENST00000281043	NM_005378.4	373	Cga/Tga																																																																															
BARD1	580	MSKCC	GRCh37	2	215632248	215632248	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			255	247	428	0	ENST00000260947.4:c.1526T>C	p.Ile509Thr	p.I509T	ENST00000260947	NM_000465.2	509	aTa/aCa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31383338	31383338	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			339	285	540	0	ENST00000328111.2:c.1250G>A	p.Arg417Gln	p.R417Q	ENST00000328111	NM_006892.3	417	cGa/cAa																																																																															
SRC	6714	MSKCC	GRCh37	20	36014556	36014556	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747298865		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			428	332	669	0	ENST00000358208.4:c.329G>A	p.Arg110Gln	p.R110Q	ENST00000358208		110	cGg/cAg																																																																															
MYD88	4615	MSKCC	GRCh37	3	38181923	38181923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			326	259	486	0	ENST00000396334.3:c.547A>G	p.Ser183Gly	p.S183G	ENST00000396334	NM_002468.4	183	Agc/Ggc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47144879	47144879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			271	243	450	0	ENST00000409792.3:c.4874G>A	p.Arg1625His	p.R1625H	ENST00000409792	NM_014159.6	1625	cGt/cAt																																																																															
RHOA	387	MSKCC	GRCh37	3	49413010	49413010	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519952		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			360	270	531	0	ENST00000418115.1:c.13C>T	p.Arg5Trp	p.R5W	ENST00000418115	NM_001664.2	5	Cgg/Tgg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52584583	52584583	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			406	337	652	1	ENST00000394830.3:c.4430del	p.Pro1477LeufsTer12	p.P1477Lfs*12	ENST00000394830	NM_018313.4	1477	cCt/ct																																																																															
ATR	545	MSKCC	GRCh37	3	142261555	142261555	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			219	162	287	2	ENST00000350721.4:c.3402del	p.Phe1134LeufsTer6	p.F1134Lfs*6	ENST00000350721	NM_001184.3	1134	ttT/tt																																																																															
ATR	545	MSKCC	GRCh37	3	142269075	142269075	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28910271		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			283	210	408	0	ENST00000350721.4:c.2875G>A	p.Val959Met	p.V959M	ENST00000350721	NM_001184.3	959	Gtg/Atg																																																																															
ATR	545	MSKCC	GRCh37	3	142278281	142278281	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs746970647		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			233	221	434	2	ENST00000350721.4:c.1544G>A	p.Arg515His	p.R515H	ENST00000350721	NM_001184.3	515	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916935	178916935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			237	188	361	0	ENST00000263967.3:c.322C>T	p.Arg108Cys	p.R108C	ENST00000263967	NM_006218.2	108	Cgt/Tgt																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182683389	182683389	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			275	196	348	0	ENST00000292782.4:c.156A>G	p.Ile52Met	p.I52M	ENST00000292782	NM_020640.2	52	atA/atG																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807119	1807119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			579	513	1036	3	ENST00000260795.2:c.1450G>A	p.Gly484Ser	p.G484S	ENST00000260795		484	Ggc/Agc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			216	159	291	0	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31422969	31422969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			345	312	536	0	ENST00000344624.3:c.3344G>A	p.Gly1115Glu	p.G1115E	ENST00000344624		1115	gGa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112116587	112116587	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			195	163	269	0	ENST00000257430.4:c.636del	p.Lys212AsnfsTer7	p.K212Nfs*7	ENST00000257430	NM_000038.5	211	gAa/ga																																																																															
APC	324	MSKCC	GRCh37	5	112179566	112179566	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755366812		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			194	166	302	0	ENST00000257430.4:c.8275C>T	p.Arg2759Cys	p.R2759C	ENST00000257430	NM_000038.5	2759	Cgt/Tgt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931452	131931452	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772667708		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			234	178	308	8	ENST00000265335.6:c.2165del	p.Lys722ArgfsTer14	p.K722Rfs*14	ENST00000265335		719	ctA/ct																																																																															
E2F3	1871	MSKCC	GRCh37	6	20481637	20481637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			126	91	215	0	ENST00000346618.3:c.710del	p.Asn237ThrfsTer27	p.N237Tfs*27	ENST00000346618	NM_001949.4	236	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			423	244	571	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553788	106553788	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1281186824		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			211	196	253	0	ENST00000369096.4:c.1753G>A	p.Gly585Ser	p.G585S	ENST00000369096	NM_001198.3	585	Ggc/Agc																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137522041	137522041	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			162	106	202	0	ENST00000367739.4:c.838del	p.Ser280AlafsTer2	p.S280Afs*2	ENST00000367739	NM_000416.2	280	Agc/gc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099332	157099333	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA	rs780268024		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			352	119	402	0	ENST00000346085.5:c.285_287dup	p.His96dup	p.H96dup	ENST00000346085	NM_020732.3	96	gcc/gcCCAc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			784	356	718	5	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367244	50367244	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			424	171	303	0	ENST00000331340.3:c.56del	p.Pro19LeufsTer2	p.P19Lfs*2	ENST00000331340	NM_006060.4	17	agC/ag																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468287	50468287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			743	318	617	0	ENST00000331340.3:c.1522C>T	p.His508Tyr	p.H508Y	ENST00000331340	NM_006060.4	508	Cac/Tac																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508257	106508257	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766854286		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			464	219	419	0	ENST00000359195.3:c.251C>T	p.Ala84Val	p.A84V	ENST00000359195	NM_002649.2	84	gCg/gTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509420	106509420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs864622026		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			678	304	557	0	ENST00000359195.3:c.1414C>T	p.Arg472Cys	p.R472C	ENST00000359195	NM_002649.2	472	Cgt/Tgt																																																																															
BRAF	673	MSKCC	GRCh37	7	140487360	140487360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507472		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			291	529	498	0	ENST00000288602.6:c.1165C>T	p.Arg389Cys	p.R389C	ENST00000288602	NM_004333.4	389	Cgt/Tgt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372029	55372029	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1332803887		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			221	505	385	1	ENST00000297316.4:c.719C>T	p.Pro240Leu	p.P240L	ENST00000297316	NM_022454.3	240	cCg/cTg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372232	55372232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			167	409	304	0	ENST00000297316.4:c.922G>A	p.Gly308Arg	p.G308R	ENST00000297316	NM_022454.3	308	Ggg/Agg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404576	8404576	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146844299		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			197	129	258	0	ENST00000356435.5:c.4171G>A	p.Ala1391Thr	p.A1391T	ENST00000356435		1391	Gca/Aca																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570332	87570332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			498	405	775	1	ENST00000277120.3:c.2072G>A	p.Arg691His	p.R691H	ENST00000277120		691	cGc/cAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			466	320	669	6	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229496	98229496	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			243	260	383	0	ENST00000331920.6:c.2462A>G	p.Asp821Gly	p.D821G	ENST00000331920	NM_000264.3	821	gAc/gGc																																																																															
ABL1	25	MSKCC	GRCh37	9	133759406	133759406	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1371645607		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			446	378	691	0	ENST00000318560.5:c.1729C>T	p.Arg577Ter	p.R577*	ENST00000318560	NM_005157.4	577	Cga/Tga																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933722	39933722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs899486642		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			55	368	738	0	ENST00000378444.4:c.877G>A	p.Val293Ile	p.V293I	ENST00000378444	NM_001123385.1	293	Gtc/Atc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44820536	44820536	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772197961		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			11	155	351	0	ENST00000377967.4:c.233G>A	p.Arg78His	p.R78H	ENST00000377967	NM_021140.2	78	cGc/cAc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53224137	53224137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			56	457	854	0	ENST00000375401.3:c.3414G>T	p.Gln1138His	p.Q1138H	ENST00000375401	NM_004187.3	1138	caG/caT																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53231067	53231067	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			179	213	598	0	ENST00000375401.3:c.1835C>T	p.Ala612Val	p.A612V	ENST00000375401	NM_004187.3	612	gCc/gTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821596	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs767179754		P-0010783-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			160	18	102	0	ENST00000268489.5:c.10579_10581del	p.Gly3527del	p.G3527del	ENST00000268489	NM_006885.3	3527	GGC/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0031318-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			943	44	640	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0031318-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	20	286	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TET2	54790	MSKCC	GRCh37	4	106193748	106193748	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs974106601		P-0031318-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	16	178	1	ENST00000380013.4:c.4210C>T	p.Arg1404Ter	p.R1404*	ENST00000380013	NM_001127208.2	1404	Cga/Tga																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347909	347909	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031318-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1344	124	1014	1	ENST00000262320.3:c.1597C>T	p.Arg533Ter	p.R533*	ENST00000262320	NM_003502.3	533	Cga/Tga																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482861	67482861	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031318-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			636	50	454	0	ENST00000327367.4:c.1265C>G	p.Ser422Cys	p.S422C	ENST00000327367	NM_005902.3	422	tCc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0053464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	165	442	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577526	7577526	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121912653		P-0053464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	282	674	0	ENST00000269305.4:c.755T>C	p.Leu252Pro	p.L252P	ENST00000269305	NM_001126112.2	252	cTc/cCc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604749	48604749	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	137	365	0	ENST00000342988.3:c.1571G>A	p.Trp524Ter	p.W524*	ENST00000342988	NM_005359.5	524	tGg/tAg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195454	102195454	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	58	261	1	ENST00000263464.3:c.214A>G	p.Met72Val	p.M72V	ENST00000263464	NM_001165.4	72	Atg/Gtg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427183	49427183	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1677	176	919	0	ENST00000301067.7:c.11305C>G	p.Leu3769Val	p.L3769V	ENST00000301067	NM_003482.3	3769	Ctg/Gtg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178097191	178097191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	145	373	0	ENST00000397062.3:c.523G>A	p.Val175Ile	p.V175I	ENST00000397062	NM_006164.4	175	Gtt/Att																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971049	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGCACGTCCAGC	CGCGCACGTCCAGC	-			P-0053464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	303	517	0	ENST00000304494.5:c.309_322del	p.Leu104CysfsTer11	p.L104Cfs*11	ENST00000304494	NM_000077.4	103	cgGCTGGACGTGCGCGat/cgat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0054719-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			464	33	234	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0054719-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1190	111	766	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220371	1220371	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0054719-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			752	104	541	0	ENST00000326873.7:c.465-1G>C		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
FLT3	2322	MSKCC	GRCh37	13	28608225	28608225	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054719-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			547	59	403	0	ENST00000241453.7:c.1831G>T	p.Glu611Ter	p.E611*	ENST00000241453	NM_004119.2	611	Gag/Tag																																																																															
TET1	80312	MSKCC	GRCh37	10	70426832	70426832	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054719-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			491	38	263	0	ENST00000373644.4:c.4492G>C	p.Val1498Leu	p.V1498L	ENST00000373644	NM_030625.2	1498	Gtt/Ctt																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123260430	123260430	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054719-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			779	53	399	0	ENST00000358487.5:c.1471del	p.Cys491AlafsTer26	p.C491Afs*26	ENST00000358487	NM_000141.4	491	Tgc/gc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416618	121416618	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054719-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			819	78	556	0	ENST00000257555.6:c.47T>A	p.Leu16Gln	p.L16Q	ENST00000257555		16	cTg/cAg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222265	2222265	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054719-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	144	619	0	ENST00000398665.3:c.3097G>T	p.Gly1033Cys	p.G1033C	ENST00000398665	NM_032482.2	1033	Ggc/Tgc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597459	10597459	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054719-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	152	622	0	ENST00000171111.5:c.1744G>T	p.Glu582Ter	p.E582*	ENST00000171111	NM_203500.1	582	Gag/Tag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25457189	25457189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054719-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			918	51	461	1	ENST00000264709.3:c.2698C>T	p.His900Tyr	p.H900Y	ENST00000264709	NM_175629.2	900	Cac/Tac																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022782	31022782	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054719-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			676	64	442	0	ENST00000375687.4:c.2267A>T	p.Asp756Val	p.D756V	ENST00000375687	NM_015338.5	756	gAc/gTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980861	40980861	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054719-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			665	40	455	0	ENST00000373198.4:c.1625T>A	p.Val542Glu	p.V542E	ENST00000373198	NM_133170.3	542	gTg/gAg																																																																															
MET	4233	MSKCC	GRCh37	7	116411882	116411883	+	intron_variant	Intron	DNP	TT	TT	GC			P-0054719-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	72	730	0	ENST00000397752.3:c.2888-21_2888-20delinsGC		p.*963*	ENST00000397752	NM_000245.2																																																																																	
PREX2	80243	MSKCC	GRCh37	8	69020519	69020519	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054719-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			595	37	406	0	ENST00000288368.4:c.2891G>C	p.Ser964Thr	p.S964T	ENST00000288368	NM_024870.2	964	aGc/aCc																																																																															
YES1	7525	MSKCC	GRCh37	18	756730	756730	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057071-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			242	21	474	0	ENST00000314574.4:c.98G>C	p.Gly33Ala	p.G33A	ENST00000314574	NM_005433.3	33	gGa/gCa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57478638	57478638	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0057071-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			553	83	498	0	ENST00000371085.3:c.310G>A	p.Glu104Lys	p.E104K	ENST00000371085	NM_000516.4	104	Gaa/Aaa																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057071-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	8	816	1	ENST00000374080.3:c.3670C>A	p.Leu1224Ile	p.L1224I	ENST00000374080		1224	Ctc/Atc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32945129	32945129	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80359104		P-0057376-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			258	49	270	0	ENST00000380152.3:c.8524C>T	p.Arg2842Cys	p.R2842C	ENST00000380152		2842	Cgc/Tgc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748111	72748111	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			576	32	631	0	ENST00000357731.5:c.67A>C	p.Ser23Arg	p.S23R	ENST00000357731	NM_173808.2	23	Agc/Cgc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243675634	243675634	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	51	250	0	ENST00000263826.5:c.1346C>A	p.Pro449His	p.P449H	ENST00000263826	NM_005465.4	449	cCt/cAt																																																																															
WT1	7490	MSKCC	GRCh37	11	32456268	32456268	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			714	333	1133	0	ENST00000332351.3:c.624C>G	p.Ser208Arg	p.S208R	ENST00000332351	NM_024426.4	208	agC/agG																																																																															
AKT1	207	MSKCC	GRCh37	14	105246424	105246424	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0057426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	180	703	2	ENST00000349310.3:c.175+1G>T		p.X59_splice	ENST00000349310	NM_001014432.1	59																																																																																
NTRK3	4916	MSKCC	GRCh37	15	88680662	88680662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			425	157	682	0	ENST00000360948.2:c.595C>A	p.Leu199Ile	p.L199I	ENST00000360948	NM_001012338.2	199	Ctc/Atc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799180	88799180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			381	140	628	0	ENST00000360948.2:c.205G>A	p.Ala69Thr	p.A69T	ENST00000360948	NM_001012338.2	69	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs878854073		P-0057426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	120	570	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
NF1	4763	MSKCC	GRCh37	17	29546041	29546044	+	stop_gained	Nonsense_Mutation	ONP	CCCG	CCCG	TCCT			P-0057426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	110	433	0	ENST00000358273.4:c.1546_1549delinsTCCT	p.Pro516_Glu517delinsSerTer	p.P516_E517delinsS*	ENST00000358273	NM_001042492.2	516	CCCGaa/TCCTaa																																																																															
NF1	4763	MSKCC	GRCh37	17	29557869	29557869	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			210	17	270	1	ENST00000358273.4:c.3124del	p.Val1042Ter	p.V1042*	ENST00000358273	NM_001042492.2	1041	atG/at																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805552	46805552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			585	224	1131	0	ENST00000290295.7:c.404G>T	p.Gly135Val	p.G135V	ENST00000290295	NM_006361.5	135	gGa/gTa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39637944	39637944	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			356	89	594	0	ENST00000262039.4:c.2361G>T	p.Met787Ile	p.M787I	ENST00000262039	NM_002647.2	787	atG/atT																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584723	48584724	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0057426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			258	78	427	0	ENST00000342988.3:c.802dup	p.Trp268LeufsTer5	p.W268Lfs*5	ENST00000342988	NM_005359.5	267	-/T																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			411	300	940	1	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546758	9546758	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			404	25	435	0	ENST00000353224.5:c.1264C>G	p.Gln422Glu	p.Q422E	ENST00000353224	NM_177990.2	422	Cag/Gag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714397	40714397	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			486	55	589	0	ENST00000373198.4:c.4000A>G	p.Arg1334Gly	p.R1334G	ENST00000373198	NM_133170.3	1334	Aga/Gga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730897	40730897	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			494	238	734	1	ENST00000373198.4:c.3638G>T	p.Cys1213Phe	p.C1213F	ENST00000373198	NM_133170.3	1213	tGc/tTc																																																																															
KDR	3791	MSKCC	GRCh37	4	55973918	55973918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			286	198	568	0	ENST00000263923.4:c.1398C>G	p.Cys466Trp	p.C466W	ENST00000263923	NM_002253.2	466	tgC/tgG																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519643	137519643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			291	78	378	0	ENST00000367739.4:c.995C>T	p.Pro332Leu	p.P332L	ENST00000367739	NM_000416.2	332	cCa/cTa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38194913	38194913	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			689	63	605	0	ENST00000317025.8:c.820del	p.Val274CysfsTer106	p.V274Cfs*106	ENST00000317025	NM_023034.1	274	Gtg/tg																																																																															
PAX5	5079	MSKCC	GRCh37	9	36923388	36923389	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0057426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			599	74	941	0	ENST00000358127.4:c.873_874delinsAG	p.Ser291_Ser292delinsArgGly	p.S291_S292delinsRG	ENST00000358127	NM_001280556.1	291	agCAgt/agAGgt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781501	135781501	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			304	116	466	0	ENST00000298552.3:c.1464G>T	p.Glu488Asp	p.E488D	ENST00000298552	NM_001162426.1	488	gaG/gaT																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399409	139399411	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-	rs761020817		P-0057468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	776	1121	3	ENST00000277541.6:c.4732_4734del	p.Val1578del	p.V1578del	ENST00000277541	NM_017617.3	1578	GTG/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1202793339		P-0057468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	474	795	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
MSH3	4437	MSKCC	GRCh37	5	80160683	80160684	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0057468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	282	631	0	ENST00000265081.6:c.3059dup	p.Asn1020LysfsTer17	p.N1020Kfs*17	ENST00000265081	NM_002439.4	1018	gaa/gAaa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391370	139391371	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0057468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1406	112	1229	0	ENST00000277541.6:c.6820_6821del	p.Ser2274ProfsTer79	p.S2274Pfs*79	ENST00000277541	NM_017617.3	2274	TCc/c																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0057744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	185	311	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922321	178922321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	111	297	0	ENST00000263967.3:c.1090G>A	p.Gly364Arg	p.G364R	ENST00000263967	NM_006218.2	364	Gga/Aga																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123310860	123310860	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147987917		P-0057744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	467	567	1	ENST00000358487.5:c.568C>T	p.Arg190Trp	p.R190W	ENST00000358487	NM_000141.4	190	Cgg/Tgg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25457216	25457216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	243	620	2	ENST00000264709.3:c.2671C>T	p.Arg891Trp	p.R891W	ENST00000264709	NM_175629.2	891	Cgg/Tgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910698	32910698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	50	368	0	ENST00000380152.3:c.2206G>A	p.Ala736Thr	p.A736T	ENST00000380152		736	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577590	7577591	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0057744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	400	516	0	ENST00000269305.4:c.690dup	p.Thr231HisfsTer9	p.T231Hfs*9	ENST00000269305	NM_001126112.2	230	-/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	80	337	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	269	608	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	47	645	0	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	12	398	0	ENST00000244661.2:c.316G>A	p.Glu106Lys	p.E106K	ENST00000244661	NM_003537.3	106	Gag/Aag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943749	9943749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	145	628	1	ENST00000330684.3:c.1192G>T	p.Asp398Tyr	p.D398Y	ENST00000330684	NM_001134407.1	398	Gac/Tac																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30129463	30129463	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780719391		P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	58	601	0	ENST00000263025.4:c.565C>T	p.Arg189Trp	p.R189W	ENST00000263025	NM_002746.2	189	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023724	27023734	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCCCCTCC	GCGGCCCCTCC	-			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	24	201	0	ENST00000324856.7:c.836_846del	p.Pro279ArgfsTer117	p.P279Rfs*117	ENST00000324856	NM_006015.4	277	gGCGGCCCCTCC/g																																																																															
PREX2	80243	MSKCC	GRCh37	8	69032484	69032484	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	31	538	0	ENST00000288368.4:c.3558C>A	p.Asp1186Glu	p.D1186E	ENST00000288368	NM_024870.2	1186	gaC/gaA																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209366	98209366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773676486		P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	89	474	0	ENST00000331920.6:c.4172G>A	p.Arg1391Gln	p.R1391Q	ENST00000331920	NM_000264.3	1391	cGg/cAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717678	89717678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	148	456	1	ENST00000371953.3:c.703G>A	p.Glu235Lys	p.E235K	ENST00000371953	NM_000314.4	235	Gaa/Aaa																																																																															
CD276	80381	MSKCC	GRCh37	15	73995338	73995338	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	66	235	0	ENST00000318443.5:c.644A>T	p.Asn215Ile	p.N215I	ENST00000318443	NM_001024736.1	215	aAt/aTt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16263864	16263864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	185	608	0	ENST00000375759.3:c.10233G>C	p.Arg3411Ser	p.R3411S	ENST00000375759	NM_015001.2	3411	agG/agC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445110	49445110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	76	692	1	ENST00000301067.7:c.2356C>A	p.Pro786Thr	p.P786T	ENST00000301067	NM_003482.3	786	Cca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446202	49446202	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	183	666	0	ENST00000301067.7:c.1264G>C	p.Ala422Pro	p.A422P	ENST00000301067	NM_003482.3	422	Gca/Cca																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281528	49281528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	239	550	0	ENST00000282018.3:c.575T>G	p.Leu192Arg	p.L192R	ENST00000282018	NM_020377.2	192	cTc/cGc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609601	81609601	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	75	530	0	ENST00000298171.2:c.1199C>A	p.Pro400His	p.P400H	ENST00000298171	NM_000369.2	400	cCc/cAc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569751	95569751	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	35	203	0	ENST00000343455.3:c.3982A>C	p.Thr1328Pro	p.T1328P	ENST00000343455	NM_177438.2	1328	Acc/Ccc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90630490	90630490	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	206	543	0	ENST00000330062.3:c.821A>G	p.Tyr274Cys	p.Y274C	ENST00000330062	NM_002168.2	274	tAt/tGt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15952210	15952210	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	59	682	0	ENST00000268712.3:c.6485A>G	p.Gln2162Arg	p.Q2162R	ENST00000268712	NM_006311.3	2162	cAg/cGg																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732460	74732460	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	22	274	0	ENST00000359995.5:c.449G>C	p.Arg150Pro	p.R150P	ENST00000359995	NM_001195427.1	150	cGg/cCg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17954608	17954608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	161	992	0	ENST00000458235.1:c.286C>A	p.Gln96Lys	p.Q96K	ENST00000458235	NM_000215.3	96	Caa/Aaa																																																																															
CIC	23152	MSKCC	GRCh37	19	42795766	42795766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	122	601	1	ENST00000575354.2:c.2755C>T	p.Pro919Ser	p.P919S	ENST00000575354	NM_015125.3	919	Cct/Tct																																																																															
KDR	3791	MSKCC	GRCh37	4	55973903	55973903	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1207	88	453	0	ENST00000263923.4:c.1412+1G>T		p.X471_splice	ENST00000263923	NM_002253.2	471																																																																																
RASA1	5921	MSKCC	GRCh37	5	86658437	86658437	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	20	145	0	ENST00000274376.6:c.1402A>G	p.Lys468Glu	p.K468E	ENST00000274376	NM_002890.2	468	Aag/Gag																																																																															
SMO	6608	MSKCC	GRCh37	7	128852222	128852222	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	40	637	0	ENST00000249373.3:c.2294G>T	p.Gly765Val	p.G765V	ENST00000249373	NM_005631.4	765	gGc/gTc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231103	98231103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	38	505	0	ENST00000331920.6:c.2180G>A	p.Cys727Tyr	p.C727Y	ENST00000331920	NM_000264.3	727	tGt/tAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70356783	70356783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	208	385	0	ENST00000374080.3:c.5455G>T	p.Asp1819Tyr	p.D1819Y	ENST00000374080		1819	Gac/Tac																																																																															
MED12	9968	MSKCC	GRCh37	X	70357430	70357430	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	200	357	0	ENST00000374080.3:c.5771A>T	p.Gln1924Leu	p.Q1924L	ENST00000374080		1924	cAg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0057801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	160	639	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0057801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	54	370	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231290	98231290	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767947110		P-0057801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	73	634	0	ENST00000331920.6:c.1993C>T	p.Arg665Cys	p.R665C	ENST00000331920	NM_000264.3	665	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912580		P-0057801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	74	266	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243708852	243708852	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	57	334	0	ENST00000263826.5:c.1211T>C	p.Phe404Ser	p.F404S	ENST00000263826	NM_005465.4	404	tTc/tCc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554008	63554009	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0057801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	232	453	0	ENST00000307078.5:c.730dup	p.Ser244PhefsTer25	p.S244Ffs*25	ENST00000307078	NM_004655.3	244	tcg/tTcg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151864256	151864256	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	69	326	2	ENST00000262189.6:c.9725G>T	p.Ser3242Ile	p.S3242I	ENST00000262189	NM_170606.2	3242	aGc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0057816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	246	605	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0057816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	54	203	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	317	742	1	ENST00000269305.4:c.405C>A	p.Cys135Ter	p.C135*	ENST00000269305	NM_001126112.2	135	tgC/tgA																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949994	44949994	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1450363794		P-0057816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	62	369	0	ENST00000377967.4:c.3763C>T	p.Arg1255Trp	p.R1255W	ENST00000377967	NM_021140.2	1255	Cgg/Tgg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94068078	94068078	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765322526		P-0057816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	89	264	0	ENST00000369303.4:c.884G>A	p.Arg295His	p.R295H	ENST00000369303	NM_004440.3	295	cGt/cAt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31437383	31437383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	160	581	0	ENST00000344624.3:c.2905G>A	p.Glu969Lys	p.E969K	ENST00000344624		969	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112173892	112173898	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAAAT	AGAAAAT	-			P-0057816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	60	324	0	ENST00000257430.4:c.2601_2607del	p.Glu868GlnfsTer46	p.E868Qfs*46	ENST00000257430	NM_000038.5	867	acAGAAAAT/ac																																																																															
TAP1	6890	MSKCC	GRCh37	6	32820941	32820941	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	109	721	0	ENST00000354258.4:c.653G>C	p.Gly218Ala	p.G218A	ENST00000354258	NM_000593.5	218	gGg/gCg																																																																															
IRF4	3662	MSKCC	GRCh37	6	394938	394938	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	106	610	0	ENST00000380956.4:c.334G>C	p.Glu112Gln	p.E112Q	ENST00000380956	NM_001195286.1	112	Gag/Cag																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115267844	115267844	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0057817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	61	573	0	ENST00000438362.2:c.1889C>G	p.Ser630Ter	p.S630*	ENST00000438362	NM_001242891.1	630	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578257	7578258	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AT			P-0057817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	298	783	0	ENST00000269305.4:c.591_592delinsAT	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	197	gtGGaa/gtATaa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39262438	39262439	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0057817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	69	594	2	ENST00000402219.2:c.988_989delinsTT	p.Gly330Phe	p.G330F	ENST00000402219	NM_005633.3	330	GGt/TTt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430477	181430477	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	339	636	0	ENST00000325404.1:c.329A>G	p.Tyr110Cys	p.Y110C	ENST00000325404	NM_003106.3	110	tAc/tGc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38287313	38287313	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	45	761	0	ENST00000425967.3:c.344C>A	p.Thr115Lys	p.T115K	ENST00000425967	NM_001174067.1	115	aCa/aAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0057839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	64	365	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434415	49434415	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	160	621	0	ENST00000301067.7:c.7138C>T	p.Gln2380Ter	p.Q2380*	ENST00000301067	NM_003482.3	2380	Cag/Tag																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156834542	156834542	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746825886		P-0057839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	75	756	0	ENST00000524377.1:c.310C>T	p.Arg104Cys	p.R104C	ENST00000524377	NM_002529.3	104	Cgt/Tgt																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241969	72241969	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	48	222	1	ENST00000357731.5:c.421A>T	p.Ile141Leu	p.I141L	ENST00000357731	NM_173808.2	141	Ata/Tta																																																																															
NF1	4763	MSKCC	GRCh37	17	29663349	29663349	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0057839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	52	307	0	ENST00000358273.4:c.6007-2A>C		p.X2003_splice	ENST00000358273	NM_001042492.2	2003																																																																																
PIK3R3	8503	MSKCC	GRCh37	1	46532622	46532637	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTTTGGGATTGTAC	AAGTTTGGGATTGTAC	CAGTT			P-0057839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	31	313	1	ENST00000262741.5:c.441_456delinsAACTG	p.Tyr148ThrfsTer22	p.Y148Tfs*22	ENST00000262741	NM_003629.3	147	caGTACAATCCCAAACTT/caAACTG																																																																															
TP53	7157	MSKCC	GRCh37	17	7579312	7579312	+	splice_region_variant,synonymous_variant	Splice_Region	SNP	C	C	T	rs55863639		P-0057841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	124	385	2	ENST00000269305.4:c.375G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125	acG/acA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0057841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	96	293	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0057841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	157	380	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266035	41266624	+	splice_donor_variant,splice_acceptor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	ACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTA	ACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTA	-			P-0057841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	50	231	0	ENST00000349496.5:c.34_423del		p.X12_splice	ENST00000349496	NM_001904.3	12	gACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAac/gac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0057842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	85	328	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0057842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	59	257	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0057842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	34	286	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29579995	29579996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0057842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	30	266	0	ENST00000358273.4:c.4157dup	p.Glu1387GlyfsTer8	p.E1387Gfs*8	ENST00000358273	NM_001042492.2	1384	gaa/gAaa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16089908	16089908	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	90	280	1	ENST00000268712.3:c.202C>T	p.Arg68Ter	p.R68*	ENST00000268712	NM_006311.3	68	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827739	72827739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	69	491	0	ENST00000268489.5:c.8842C>T	p.Arg2948Cys	p.R2948C	ENST00000268489	NM_006885.3	2948	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0057846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	215	544	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
MED12	9968	MSKCC	GRCh37	X	70353052	70353052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	20	415	0	ENST00000374080.3:c.4607G>A	p.Arg1536Gln	p.R1536Q	ENST00000374080		1536	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087423	27087423	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0057846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	249	691	0	ENST00000324856.7:c.1999del	p.Ser667ProfsTer75	p.S667Pfs*75	ENST00000324856	NM_006015.4	666	aTt/at																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248659	212248660	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CATACTCATC			P-0057846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	16	442	0	ENST00000342788.4:c.3598_3607dup	p.Val1203GlyfsTer2	p.V1203Gfs*2	ENST00000342788	NM_005235.2	1203	gtg/gGATGAGTATGtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	518	1040	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610637	10610637	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	230	731	0	ENST00000171111.5:c.73G>C	p.Glu25Gln	p.E25Q	ENST00000171111	NM_203500.1	25	Gag/Cag																																																																															
SUFU	51684	MSKCC	GRCh37	10	104356924	104356924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	50	570	0	ENST00000369902.3:c.784G>A	p.Asp262Asn	p.D262N	ENST00000369902	NM_016169.3	262	Gat/Aat																																																																															
NF1	4763	MSKCC	GRCh37	17	29683508	29683508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	75	278	0	ENST00000358273.4:c.7646C>T	p.Ser2549Leu	p.S2549L	ENST00000358273	NM_001042492.2	2549	tCa/tTa																																																																															
ATM	472	MSKCC	GRCh37	11	108141997	108141997	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587780619		P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	277	456	0	ENST00000278616.4:c.2941C>T	p.Arg981Cys	p.R981C	ENST00000278616	NM_000051.3	981	Cgt/Tgt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193205417	193205417	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1386267118		P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	160	422	0	ENST00000367435.3:c.1348C>T	p.Pro450Ser	p.P450S	ENST00000367435	NM_024529.4	450	Cct/Tct																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280094	66280094	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	71	275	0	ENST00000273854.3:c.1595C>A	p.Pro532Gln	p.P532Q	ENST00000273854	NM_004439.5	532	cCa/cAa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692819	89692819	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	15	235	0	ENST00000371953.3:c.303C>G	p.Ile101Met	p.I101M	ENST00000371953	NM_000314.4	101	atC/atG																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139418328	139418328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs571831870		P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	332	1116	1	ENST00000277541.6:c.244G>A	p.Val82Met	p.V82M	ENST00000277541	NM_017617.3	82	Gtg/Atg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632618	3632618	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	226	866	0	ENST00000294008.3:c.5230C>T	p.Gln1744Ter	p.Q1744*	ENST00000294008	NM_032444.2	1744	Cag/Tag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661578	227661578	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770397566		P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	265	760	1	ENST00000305123.5:c.1877G>A	p.Arg626Gln	p.R626Q	ENST00000305123	NM_005544.2	626	cGa/cAa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919021	50919021	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060501811		P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	214	919	0	ENST00000440232.2:c.2758G>A	p.Asp920Asn	p.D920N	ENST00000440232	NM_002691.3	920	Gac/Aac																																																																															
TET1	80312	MSKCC	GRCh37	10	70405437	70405437	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	73	537	0	ENST00000373644.4:c.2951C>G	p.Ser984Ter	p.S984*	ENST00000373644	NM_030625.2	984	tCa/tGa																																																																															
RAB35	11021	MSKCC	GRCh37	12	120536716	120536716	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	194	751	0	ENST00000229340.5:c.376G>C	p.Glu126Gln	p.E126Q	ENST00000229340	NM_006861.6	126	Gag/Cag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10244895	10244895	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	216	842	0	ENST00000340748.4:c.4814C>T	p.Ser1605Leu	p.S1605L	ENST00000340748		1605	tCa/tTa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786887	135786887	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	131	386	0	ENST00000298552.3:c.982C>G	p.Gln328Glu	p.Q328E	ENST00000298552	NM_001162426.1	328	Cag/Gag																																																																															
CD276	80381	MSKCC	GRCh37	15	73994865	73994865	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200105637		P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	12	36	0	ENST00000318443.5:c.349G>A	p.Glu117Lys	p.E117K	ENST00000318443	NM_001024736.1	117	Gag/Aag																																																																															
EP300	2033	MSKCC	GRCh37	22	41568501	41568501	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	115	302	0	ENST00000263253.7:c.4453-2A>T		p.X1485_splice	ENST00000263253	NM_001429.3	1485																																																																																
FAM175A	84142	MSKCC	GRCh37	4	84383804	84383804	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs751068863		P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	197	510	0	ENST00000321945.7:c.1048G>C	p.Asp350His	p.D350H	ENST00000321945	NM_139076.2	350	Gac/Cac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945021	151945021	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756918375		P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	27	19	0	ENST00000262189.6:c.2498G>A	p.Arg833Lys	p.R833K	ENST00000262189	NM_170606.2	833	aGa/aAa																																																																															
RAC2	5880	MSKCC	GRCh37	22	37622754	37622754	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	173	869	0	ENST00000249071.6:c.538C>T	p.Gln180Ter	p.Q180*	ENST00000249071	NM_002872.4	180	Cag/Tag																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911061	29911061	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	622	1097	0	ENST00000376809.5:c.360G>C	p.Gln120His	p.Q120H	ENST00000376809	NM_002116.7	120	caG/caC																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094310	27094310	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	78	438	0	ENST00000324856.7:c.3018del	p.Lys1007ArgfsTer32	p.K1007Rfs*32	ENST00000324856	NM_006015.4	1006	gaG/ga																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366737	40366737	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	107	355	0	ENST00000397332.2:c.460A>G	p.Lys154Glu	p.K154E	ENST00000397332	NM_001033082.2	154	Aag/Gag																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115268862	115268862	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	159	480	0	ENST00000438362.2:c.1748A>G	p.Asn583Ser	p.N583S	ENST00000438362	NM_001242891.1	583	aAt/aGt																																																																															
MCL1	4170	MSKCC	GRCh37	1	150550727	150550727	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	125	332	0	ENST00000369026.2:c.929G>C	p.Arg310Thr	p.R310T	ENST00000369026	NM_021960.4	310	aGa/aCa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156830872	156830872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	140	509	0	ENST00000524377.1:c.146G>A	p.Arg49Gln	p.R49Q	ENST00000524377	NM_002529.3	49	cGa/cAa																																																																															
WT1	7490	MSKCC	GRCh37	11	32439155	32439155	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	115	494	0	ENST00000332351.3:c.918G>C	p.Trp306Cys	p.W306C	ENST00000332351	NM_024426.4	306	tgG/tgC																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343227	118343227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	92	294	0	ENST00000534358.1:c.1353C>A	p.Phe451Leu	p.F451L	ENST00000534358	NM_005933.3	451	ttC/ttA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424443	49424443	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	172	797	0	ENST00000301067.7:c.13780del	p.Ala4594ProfsTer23	p.A4594Pfs*23	ENST00000301067	NM_003482.3	4594	Gcc/cc																																																																															
MGA	23269	MSKCC	GRCh37	15	42028445	42028445	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	116	345	0	ENST00000219905.7:c.3983C>G	p.Ser1328Ter	p.S1328*	ENST00000219905	NM_001164273.1	1328	tCa/tGa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961354	15961354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	143	435	0	ENST00000268712.3:c.6035G>A	p.Gly2012Glu	p.G2012E	ENST00000268712	NM_006311.3	2012	gGa/gAa																																																																															
STAT3	6774	MSKCC	GRCh37	17	40481591	40481591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	178	639	0	ENST00000264657.5:c.1214C>T	p.Ser405Phe	p.S405F	ENST00000264657	NM_139276.2	405	tCt/tTt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291971	15291971	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	225	1009	0	ENST00000263388.2:c.2795C>G	p.Ser932Cys	p.S932C	ENST00000263388	NM_000435.2	932	tCc/tGc																																																																															
RRAS	6237	MSKCC	GRCh37	19	50139958	50139958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	344	890	1	ENST00000246792.3:c.371C>A	p.Thr124Lys	p.T124K	ENST00000246792	NM_006270.3	124	aCg/aAg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212483946	212483946	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	128	444	0	ENST00000342788.4:c.2257C>G	p.Leu753Val	p.L753V	ENST00000342788	NM_005235.2	753	Ctt/Gtt																																																																															
RAC2	5880	MSKCC	GRCh37	22	37627994	37627994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	157	777	0	ENST00000249071.6:c.266C>T	p.Ser89Phe	p.S89F	ENST00000249071	NM_002872.4	89	tCt/tTt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71161689	71161689	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	74	248	0	ENST00000318789.4:c.280C>T	p.Gln94Ter	p.Q94*	ENST00000318789	NM_032682.5	94	Cag/Tag																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138453562	138453562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	101	328	0	ENST00000289153.2:c.886G>C	p.Glu296Gln	p.E296Q	ENST00000289153	NM_006219.2	296	Gaa/Caa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258998	153258998	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	67	239	0	ENST00000281708.4:c.817G>C	p.Glu273Gln	p.E273Q	ENST00000281708	NM_033632.3	273	Gaa/Caa																																																																															
APC	324	MSKCC	GRCh37	5	112170705	112170705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	137	435	1	ENST00000257430.4:c.1801G>A	p.Glu601Lys	p.E601K	ENST00000257430	NM_000038.5	601	Gag/Aag																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324712	31324712	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	458	1169	0	ENST00000412585.2:c.96del	p.Tyr33ThrfsTer26	p.Y33Tfs*26	ENST00000412585	NM_005514.6	32	ttC/tt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741205	145741205	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	289	924	0	ENST00000428558.2:c.1201G>C	p.Glu401Gln	p.E401Q	ENST00000428558	NM_004260.3	401	Gag/Cag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742998	145742998	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	38	56	0	ENST00000428558.2:c.106G>C	p.Glu36Gln	p.E36Q	ENST00000428558	NM_004260.3	36	Gag/Cag																																																																															
TSC1	7248	MSKCC	GRCh37	9	135779192	135779192	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	100	371	0	ENST00000298552.3:c.2054C>A	p.Ser685Ter	p.S685*	ENST00000298552	NM_001162426.1	685	tCa/tAa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391508	139391508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	259	1056	1	ENST00000277541.6:c.6683C>T	p.Ser2228Phe	p.S2228F	ENST00000277541	NM_017617.3	2228	tCc/tTc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061207	38061207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	256	577	1	ENST00000250448.2:c.782G>A	p.Arg261His	p.R261H	ENST00000250448	NM_004496.3	261	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685271	89685271	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0057963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	115	186	0	ENST00000371953.3:c.170del	p.Leu57TrpfsTer42	p.L57Wfs*42	ENST00000371953	NM_000314.4	56	Ttt/tt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650795	37650795	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	607	593	0	ENST00000447079.4:c.2267A>G	p.Lys756Arg	p.K756R	ENST00000447079	NM_015083.1	756	aAg/aGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416413	49416413	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	317	561	0	ENST00000301067.7:c.16298A>C	p.Asn5433Thr	p.N5433T	ENST00000301067	NM_003482.3	5433	aAc/aCc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993720	72993720	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0057963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	146	758	0	ENST00000268489.5:c.325A>T	p.Arg109Ter	p.R109*	ENST00000268489	NM_006885.3	109	Aga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255028	16255028	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	37	312	0	ENST00000375759.3:c.2293A>C	p.Ser765Arg	p.S765R	ENST00000375759	NM_015001.2	765	Agc/Cgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42052636	42052636	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1054243525		P-0057984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	132	381	3	ENST00000219905.7:c.7307G>A	p.Arg2436His	p.R2436H	ENST00000219905	NM_001164273.1	2436	cGt/cAt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476409	88476409	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0057984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	53	491	0	ENST00000360948.2:c.1723A>T	p.Lys575Ter	p.K575*	ENST00000360948	NM_001012338.2	575	Aag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0057984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	269	700	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
RARA	5914	MSKCC	GRCh37	17	38504571	38504571	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1410890791		P-0057984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	93	615	2	ENST00000254066.5:c.182T>C	p.Ile61Thr	p.I61T	ENST00000254066	NM_000964.3	61	aTt/aCt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902163	50902163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	74	895	2	ENST00000440232.2:c.55C>T	p.Arg19Cys	p.R19C	ENST00000440232	NM_002691.3	19	Cgt/Tgt																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288333	21288333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	81	548	0	ENST00000354336.3:c.578G>A	p.Arg193Lys	p.R193K	ENST00000354336	NM_005207.3	193	aGg/aAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0057984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	105	282	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
NBN	4683	MSKCC	GRCh37	8	90955491	90955491	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	62	407	0	ENST00000265433.3:c.2174A>T	p.Gln725Leu	p.Q725L	ENST00000265433	NM_002485.4	725	cAg/cTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933265	39933290	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGACAAGTCTAGTGGCTTATCTGT	GAAGACAAGTCTAGTGGCTTATCTGT	-			P-0057984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	201	414	3	ENST00000378444.4:c.1309_1334del	p.Thr437Ter	p.T437*	ENST00000378444	NM_001123385.1	437	ACAGATAAGCCACTAGACTTGTCTTCt/t																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0057988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	42	315	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0057988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	92	525	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0057988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	133	852	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0057988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	42	176	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244138	153244138	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	90	445	0	ENST00000281708.4:c.2019G>A	p.Trp673Ter	p.W673*	ENST00000281708	NM_033632.3	673	tgG/tgA																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212230	5212230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367918810		P-0057988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	78	750	0	ENST00000357368.4:c.4801G>A	p.Val1601Ile	p.V1601I	ENST00000357368	NM_002850.3	1601	Gtc/Atc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375037	45375037	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0057988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	31	280	0	ENST00000262160.6:c.806C>G	p.Ser269Ter	p.S269*	ENST00000262160	NM_005901.5	269	tCa/tGa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222339	2222339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771191963		P-0057991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	221	899	0	ENST00000326181.6:c.623G>A	p.Arg208Gln	p.R208Q	ENST00000326181	NM_032271.2	208	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112174724	112174724	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	46	195	0	ENST00000257430.4:c.3433G>T	p.Glu1145Ter	p.E1145*	ENST00000257430	NM_000038.5	1145	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579446	7579447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0057991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	291	814	0	ENST00000269305.4:c.240dup	p.Thr81TyrfsTer68	p.T81Yfs*68	ENST00000269305	NM_001126112.2	80	-/T																																																																															
APC	324	MSKCC	GRCh37	5	112177391	112177391	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	65	223	0	ENST00000257430.4:c.6100T>G	p.Ser2034Ala	p.S2034A	ENST00000257430	NM_000038.5	2034	Tct/Gct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	79	316	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	13	206	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	234	664	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	144	602	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306677	41306677	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs724159835		P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	90	804	0	ENST00000373198.4:c.982C>T	p.Arg328Cys	p.R328C	ENST00000373198	NM_133170.3	328	Cgc/Tgc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129169	64129169	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746466314		P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	112	1076	0	ENST00000334205.4:c.707C>T	p.Ser236Leu	p.S236L	ENST00000334205	NM_003942.2	236	tCg/tTg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056591	26056591	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	30	329	0	ENST00000343677.2:c.66G>C	p.Lys22Asn	p.K22N	ENST00000343677	NM_005319.3	22	aaG/aaC																																																																															
WT1	7490	MSKCC	GRCh37	11	32456321	32456321	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	192	1018	0	ENST00000332351.3:c.571G>T	p.Gly191Cys	p.G191C	ENST00000332351	NM_024426.4	191	Ggc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108115575	108115575	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	32	349	1	ENST00000278616.4:c.723G>T	p.Lys241Asn	p.K241N	ENST00000278616	NM_000051.3	241	aaG/aaT																																																																															
JUN	3725	MSKCC	GRCh37	1	59248430	59248430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	76	678	0	ENST00000371222.2:c.313G>A	p.Asp105Asn	p.D105N	ENST00000371222	NM_002228.3	105	Gat/Aat																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120508099	120508099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	49	305	0	ENST00000256646.2:c.1658G>T	p.Gly553Val	p.G553V	ENST00000256646	NM_024408.3	553	gGc/gTc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274656	123274656	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	50	462	0	ENST00000358487.5:c.1262G>T	p.Arg421Leu	p.R421L	ENST00000358487	NM_000141.4	421	cGt/cTt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137062	64137062	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	204	842	0	ENST00000334205.4:c.1573G>T	p.Gly525Cys	p.G525C	ENST00000334205	NM_003942.2	525	Ggc/Tgc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94169033	94169033	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	28	282	0	ENST00000323929.3:c.1959A>T	p.Glu653Asp	p.E653D	ENST00000323929	NM_005591.3	653	gaA/gaT																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944741	31944741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	23	128	0	ENST00000340398.3:c.360G>T	p.Met120Ile	p.M120I	ENST00000340398	NM_001013699.2	120	atG/atT																																																																															
POLE	5426	MSKCC	GRCh37	12	133201317	133201317	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	74	823	0	ENST00000320574.5:c.6827G>A	p.Trp2276Ter	p.W2276*	ENST00000320574	NM_006231.2	2276	tGg/tAg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274213	10274213	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1302734897		P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	250	500	0	ENST00000330684.3:c.56G>A	p.Arg19His	p.R19H	ENST00000330684	NM_001134407.1	19	cGc/cAc																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349203	11349232	+	inframe_deletion	In_Frame_Del	DEL	CCGCGGGGCACGGCCGCGGGCGCGCGGGGG	CCGCGGGGCACGGCCGCGGGCGCGCGGGGG	-	rs750807426		P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	83	109	0	ENST00000332029.2:c.104_133del	p.Ala35_Ala44del	p.A35_A44del	ENST00000332029	NM_003745.1	35	gCCCCCGCGCGCCCGCGGCCGTGCCCCGCGGtc/gtc																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349277	11349277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	105	401	3	ENST00000332029.2:c.59G>A	p.Arg20Gln	p.R20Q	ENST00000332029	NM_003745.1	20	cGa/cAa																																																																															
RARA	5914	MSKCC	GRCh37	17	38512280	38512281	+	missense_variant	Missense_Mutation	DNP	GC	GC	CG			P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1247	103	1124	0	ENST00000254066.5:c.1191_1192delinsCG	p.Leu398Val	p.L398V	ENST00000254066	NM_000964.3	397	acGCtg/acCGtg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610126	10610127	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	179	869	1	ENST00000171111.5:c.583_584delinsTT	p.Gly195Phe	p.G195F	ENST00000171111	NM_203500.1	195	GGc/TTc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909482	50909482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	128	1102	0	ENST00000440232.2:c.1286C>T	p.Ser429Phe	p.S429F	ENST00000440232	NM_002691.3	429	tCc/tTc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085860	16085860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	56	544	0	ENST00000281043.3:c.1036C>T	p.Pro346Ser	p.P346S	ENST00000281043	NM_005378.4	346	Cca/Tca																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265405	152265405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	60	471	0	ENST00000206249.3:c.858G>A	p.Met286Ile	p.M286I	ENST00000206249	NM_000125.3	286	atG/atA																																																																															
HGF	3082	MSKCC	GRCh37	7	81339484	81339484	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	158	426	0	ENST00000222390.5:c.1520G>T	p.Trp507Leu	p.W507L	ENST00000222390	NM_000601.4	507	tGg/tTg																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29195901	29195901	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	96	920	0	ENST00000240100.2:c.697C>A	p.Pro233Thr	p.P233T	ENST00000240100	NM_001394.6	233	Cca/Aca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391593	139391593	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	356	1234	2	ENST00000277541.6:c.6598G>T	p.Val2200Leu	p.V2200L	ENST00000277541	NM_017617.3	2200	Gtg/Ttg																																																																															
ATRX	546	MSKCC	GRCh37	X	76814270	76814270	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	21	281	0	ENST00000373344.5:c.6374A>G	p.Asn2125Ser	p.N2125S	ENST00000373344	NM_000489.3	2125	aAt/aGt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0057999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	338	552	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519912		P-0057999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	471	392	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188078	11188078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	271	457	0	ENST00000361445.4:c.6016G>A	p.Val2006Ile	p.V2006I	ENST00000361445	NM_004958.3	2006	Gtc/Atc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061462	38061462	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	339	544	0	ENST00000250448.2:c.527T>G	p.Ile176Ser	p.I176S	ENST00000250448	NM_004496.3	176	aTc/aGc																																																																															
MGA	23269	MSKCC	GRCh37	15	42052519	42052519	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0057999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	173	282	0	ENST00000219905.7:c.7192-2A>G		p.X2398_splice	ENST00000219905	NM_001164273.1	2398																																																																																
TSC2	7249	MSKCC	GRCh37	16	2127648	2127648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	305	802	0	ENST00000219476.3:c.2887G>A	p.Val963Met	p.V963M	ENST00000219476	NM_000548.3	963	Gtg/Atg																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123504126	123504126	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	190	197	0	ENST00000371139.4:c.302C>A	p.Pro101Gln	p.P101Q	ENST00000371139	NM_001114937.2	101	cCa/cAa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061221	38061232	+	inframe_deletion	In_Frame_Del	DEL	GTTCTCGAACAT	GTTCTCGAACAT	-			P-0058000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	70	756	0	ENST00000250448.2:c.757_768del	p.Met253_Asn256del	p.M253_N256del	ENST00000250448	NM_004496.3	253	ATGTTCGAGAAC/-																																																																															
MCL1	4170	MSKCC	GRCh37	1	150550796	150550796	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	50	446	0	ENST00000369026.2:c.860T>A	p.Ile287Asn	p.I287N	ENST00000369026	NM_021960.4	287	aTc/aAc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748263	43748263	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	63	724	0	ENST00000382044.4:c.2543C>G	p.Pro848Arg	p.P848R	ENST00000382044	NM_001141980.1	848	cCt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0058001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	110	683	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880257	37880257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	57	448	0	ENST00000269571.5:c.2301C>G	p.Ile767Met	p.I767M	ENST00000269571		767	atC/atG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0058001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	55	311	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285087	15285087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763870059		P-0058001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	54	871	0	ENST00000263388.2:c.4528C>T	p.Arg1510Cys	p.R1510C	ENST00000263388	NM_000435.2	1510	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112173778	112173778	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	20	282	0	ENST00000257430.4:c.2487del	p.Val830CysfsTer12	p.V830Cfs*12	ENST00000257430	NM_000038.5	829	acA/ac																																																																															
APC	324	MSKCC	GRCh37	5	112178790	112178790	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0058001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	33	370	0	ENST00000257430.4:c.7499A>T	p.Gln2500Leu	p.Q2500L	ENST00000257430	NM_000038.5	2500	cAg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579336	7579336	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	178	779	0	ENST00000269305.4:c.351del	p.Thr118GlnfsTer5	p.T118Qfs*5	ENST00000269305	NM_001126112.2	117	ggG/gg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717615	89717615	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909227		P-0058002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	184	370	1	ENST00000371953.3:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000371953	NM_000314.4	214	Cag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974775	21974775	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0058002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	192	287	0	ENST00000304494.5:c.52del	p.Thr18ArgfsTer8	p.T18Rfs*8	ENST00000304494	NM_000077.4	18	Acg/cg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61712945	61712945	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0058002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	381	380	0	ENST00000401558.2:c.2466A>G	p.Ile822Met	p.I822M	ENST00000401558	NM_003400.3	822	atA/atG																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519920		P-0058002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	131	279	0	ENST00000397062.3:c.85G>A	p.Asp29Asn	p.D29N	ENST00000397062	NM_006164.4	29	Gat/Aat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434050	49434050	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	525	1024	1	ENST00000301067.7:c.7503del	p.Pro2502GlnfsTer41	p.P2502Qfs*41	ENST00000301067	NM_003482.3	2501	ggG/gg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748732	43748732	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	145	802	0	ENST00000382044.4:c.2074G>T	p.Val692Phe	p.V692F	ENST00000382044	NM_001141980.1	692	Gtt/Ttt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164535	47164535	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0058002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	125	332	0	ENST00000409792.3:c.1591del	p.Cys531ValfsTer48	p.C531Vfs*48	ENST00000409792	NM_014159.6	531	Tgt/gt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807363	1807363	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0058002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	309	850	0	ENST00000260795.2:c.1612A>G	p.Ile538Val	p.I538V	ENST00000260795		538	Atc/Gtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0058007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	119	415	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131691026		P-0058007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	167	1216	1	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082749	16082749	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0058007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	26	132	0	ENST00000281043.3:c.563A>C	p.Asp188Ala	p.D188A	ENST00000281043	NM_005378.4	188	gAt/gCt																																																																															
RB1	5925	MSKCC	GRCh37	13	48934148	48934155	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCAGGGG	TTCAGGGG	-			P-0058007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	42	260	0	ENST00000267163.4:c.608-5_610del		p.X203_splice	ENST00000267163	NM_000321.2	203																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0058015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	96	768	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257336	16257336	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0058015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	70	523	0	ENST00000375759.3:c.4601C>G	p.Ser1534Ter	p.S1534*	ENST00000375759	NM_015001.2	1534	tCa/tGa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349146	89349146	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0058015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	140	1076	0	ENST00000301030.4:c.3804del	p.Lys1269SerfsTer49	p.K1269Sfs*49	ENST00000301030	NM_001256183.1	1268	agG/ag																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128047034	128047034	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1249110579		P-0058015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	69	608	0	ENST00000285398.2:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000285398	NM_000122.1	234	cGa/cAa																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885517	111885517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	88	982	2	ENST00000341259.2:c.1294C>T	p.Pro432Ser	p.P432S	ENST00000341259	NM_005475.2	432	Ccc/Tcc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813690	50813690	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	84	685	0	ENST00000398568.2:c.1244C>G	p.Ser415Cys	p.S415C	ENST00000398568	NM_001042412.1	415	tCt/tGt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229580	5229580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0058015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	11	159	0	ENST00000357368.4:c.2271G>T	p.Gln757His	p.Q757H	ENST00000357368	NM_002850.3	757	caG/caT																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799772	72799772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0058015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	53	601	1	ENST00000325599.8:c.1397C>T	p.Ser466Phe	p.S466F	ENST00000325599	NM_018130.2	466	tCt/tTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187554903	187554903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0058015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	47	466	0	ENST00000441802.2:c.4258G>A	p.Glu1420Lys	p.E1420K	ENST00000441802	NM_005245.3	1420	Gaa/Aaa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192519	138192519	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0058015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	69	347	0	ENST00000237289.4:c.155G>C	p.Arg52Thr	p.R52T	ENST00000237289	NM_001270507.1	52	aGa/aCa																																																																															
BRAF	673	MSKCC	GRCh37	7	140482868	140482868	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0058015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	39	605	0	ENST00000288602.6:c.1267C>A	p.Gln423Lys	p.Q423K	ENST00000288602	NM_004333.4	423	Cag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0058029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	10	374	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672323	86672323	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0058029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	20	341	0	ENST00000274376.6:c.2125C>T	p.Arg709Ter	p.R709*	ENST00000274376	NM_002890.2	709	Cga/Tga																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982331	201982332	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0058029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	80	1001	0	ENST00000359651.3:c.715dup	p.Asp239GlyfsTer62	p.D239Gfs*62	ENST00000359651		237	aag/aaGg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981167	201981168	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0058029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	76	932	0	ENST00000359651.3:c.248dup	p.Asn83LysfsTer9	p.N83Kfs*9	ENST00000359651		82	-/A																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520524	176520524	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763461529		P-0058029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	59	1016	0	ENST00000292408.4:c.1369G>A	p.Asp457Asn	p.D457N	ENST00000292408	NM_213647.1	457	Gac/Aac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045115	47045115	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0058029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	27	350	0	ENST00000329236.7:c.2122C>T	p.Gln708Ter	p.Q708*	ENST00000329236	NM_001204466.1	708	Caa/Taa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482859	67482872	+	frameshift_variant	Frame_Shift_Del	DEL	TTCCAGTGTGTCTT	TTCCAGTGTGTCTT	-			P-0058029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	57	532	0	ENST00000327367.4:c.1263_1276del	p.Cys421Ter	p.C421*	ENST00000327367	NM_005902.3	421	tgTTCCAGTGTGTCTTag/tgag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678572	88678572	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0058029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	71	445	0	ENST00000360948.2:c.964G>C	p.Glu322Gln	p.E322Q	ENST00000360948	NM_001012338.2	322	Gag/Cag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39930281	39930282	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0058029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	56	371	0	ENST00000378444.4:c.3182dup	p.Pro1062AlafsTer17	p.P1062Afs*17	ENST00000378444	NM_001123385.1	1061	aag/aaAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0057240-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			257	462	435	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0057240-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	45	334	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0057240-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			295	285	976	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0057776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	74	275	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579369	7579369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	225	1163	0	ENST00000269305.4:c.318C>G	p.Ser106Arg	p.S106R	ENST00000269305	NM_001126112.2	106	agC/agG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0057379-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	229	423	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057379-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			274	369	735	0	ENST00000269305.4:c.470T>G	p.Val157Gly	p.V157G	ENST00000269305	NM_001126112.2	157	gTc/gGc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163309194	163309194	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057379-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			183	19	458	0	ENST00000271452.3:c.533A>G	p.Glu178Gly	p.E178G	ENST00000271452	NM_145697.2	178	gAa/gGa																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36651927	36651928	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0057379-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			281	83	602	1	ENST00000244741.5:c.49_50delinsAT	p.Ala17Ile	p.A17I	ENST00000244741	NM_000389.4	17	GCc/ATc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650611	48650611	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057379-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	34	656	0	ENST00000376670.3:c.581T>A	p.Leu194His	p.L194H	ENST00000376670	NM_002049.3	194	cTc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0057582-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			541	435	406	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032302	10032302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057582-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			595	102	519	1	ENST00000330684.3:c.521C>T	p.Thr174Ile	p.T174I	ENST00000330684	NM_001134407.1	174	aCc/aTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040905	47040905	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0057582-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			416	136	387	0	ENST00000329236.7:c.1202-1G>C		p.X401_splice	ENST00000329236	NM_001204466.1	401																																																																																
TP53	7157	MSKCC	GRCh37	17	7578498	7578499	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	G			P-0057582-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	169	791	0	ENST00000269305.4:c.431_432delinsC	p.Gln144ProfsTer26	p.Q144Pfs*26	ENST00000269305	NM_001126112.2	144	cAG/cC																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0057893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3989	3053	555	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0057893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	232	665	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433388	49433388	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	95	780	1	ENST00000301067.7:c.8059C>T	p.Arg2687Ter	p.R2687*	ENST00000301067	NM_003482.3	2687	Cga/Tga																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185161349	185161349	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	141	634	0	ENST00000265026.3:c.776G>A	p.Trp259Ter	p.W259*	ENST00000265026	NM_004721.4	259	tGg/tAg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120459217	120459217	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	51	586	0	ENST00000256646.2:c.6128A>T	p.Asp2043Val	p.D2043V	ENST00000256646	NM_024408.3	2043	gAt/gTt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162722889	162722889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	84	490	0	ENST00000367921.3:c.87A>G	p.Ile29Met	p.I29M	ENST00000367921	NM_006182.2	29	atA/atG																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630648	187630648	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	79	687	0	ENST00000441802.2:c.334G>T	p.Val112Leu	p.V112L	ENST00000441802	NM_005245.3	112	Gtg/Ttg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86658395	86658395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	35	178	0	ENST00000274376.6:c.1360G>A	p.Val454Met	p.V454M	ENST00000274376	NM_002890.2	454	Gtg/Atg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967219	93967219	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	60	392	0	ENST00000369303.4:c.2133A>G	p.Ile711Met	p.I711M	ENST00000369303	NM_004440.3	711	atA/atG																																																																															
ATRX	546	MSKCC	GRCh37	X	76940073	76940073	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	82	254	0	ENST00000373344.5:c.675A>T	p.Glu225Asp	p.E225D	ENST00000373344	NM_000489.3	225	gaA/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578435	7578435	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	203	703	0	ENST00000269305.4:c.495del	p.Gln165HisfsTer5	p.Q165Hfs*5	ENST00000269305	NM_001126112.2	165	caG/ca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151846090	151846090	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756354376		P-0057895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	80	461	0	ENST00000262189.6:c.12922G>A	p.Ala4308Thr	p.A4308T	ENST00000262189	NM_170606.2	4308	Gcc/Acc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061215	38061231	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCCGTTCTCGAACA	GCAGCCGTTCTCGAACA	T			P-0057895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	117	451	0	ENST00000250448.2:c.758_774delinsA	p.Met253AsnfsTer63	p.M253Nfs*63	ENST00000250448	NM_004496.3	253	aTGTTCGAGAACGGCTGC/aA																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577164	64577178	+	inframe_deletion	In_Frame_Del	DEL	TGTGGGCCCGATCCT	TGTGGGCCCGATCCT	-			P-0037474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	420	907	0	ENST00000337652.1:c.404_418del	p.Lys135_His139del	p.K135_H139del	ENST00000337652	NM_130803.2	135	aAGGATCGGGCCCACAtc/atc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024255	31024255	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760905906		P-0038805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	223	499	2	ENST00000375687.4:c.3740G>A	p.Arg1247His	p.R1247H	ENST00000375687	NM_015338.5	1247	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0057452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	277	861	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913422	32913422	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	29	478	0	ENST00000380152.3:c.4930G>C	p.Glu1644Gln	p.E1644Q	ENST00000380152		1644	Gaa/Caa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275804	38275804	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	97	875	0	ENST00000425967.3:c.1465G>C	p.Ala489Pro	p.A489P	ENST00000425967	NM_001174067.1	489	Gca/Cca																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1325358	1325358	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	206	686	0	ENST00000381566.1:c.317T>G	p.Val106Gly	p.V106G	ENST00000381566		106	gTt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0057760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	202	880	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858210	9858210	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756930722		P-0057760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	62	692	1	ENST00000330684.3:c.3191C>T	p.Thr1064Met	p.T1064M	ENST00000330684	NM_001134407.1	1064	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs1427441061		P-0057377-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			660	64	824	0	ENST00000269305.4:c.560-2A>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
MST1R	4486	MSKCC	GRCh37	3	49927989	49927989	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374259168		P-0057377-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			730	65	877	0	ENST00000296474.3:c.3739G>A	p.Ala1247Thr	p.A1247T	ENST00000296474	NM_002447.2	1247	Gct/Act																																																																															
SOS1	6654	MSKCC	GRCh37	2	39214727	39214727	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057377-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			415	37	327	0	ENST00000402219.2:c.3397G>C	p.Ala1133Pro	p.A1133P	ENST00000402219	NM_005633.3	1133	Gct/Cct																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47596681	47596682	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0057377-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			479	54	447	0	ENST00000263735.4:c.37_38insG	p.Leu13ArgfsTer18	p.L13Rfs*18	ENST00000263735	NM_002354.2	13	ctt/cGtt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880257	37880257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	19	515	0	ENST00000269571.5:c.2301C>G	p.Ile767Met	p.I767M	ENST00000269571		767	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540652		P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	111	776	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778720		P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	138	778	0	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602413	10602413	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	165	1298	1	ENST00000171111.5:c.1165G>T	p.Asp389Tyr	p.D389Y	ENST00000171111	NM_203500.1	389	Gac/Tac																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520141	9520141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs560752200		P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	87	456	0	ENST00000353224.5:c.2128G>A	p.Val710Ile	p.V710I	ENST00000353224	NM_177990.2	710	Gtc/Atc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523357	176523357	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	158	1019	0	ENST00000292408.4:c.2014G>T	p.Val672Leu	p.V672L	ENST00000292408	NM_213647.1	672	Gtg/Ttg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244652	46244652	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	81	573	0	ENST00000334344.6:c.2746C>T	p.Gln916Ter	p.Q916*	ENST00000334344	NM_152641.2	916	Caa/Taa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162725540	162725540	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	48	427	0	ENST00000367921.3:c.652G>C	p.Asp218His	p.D218H	ENST00000367921	NM_006182.2	218	Gat/Cat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431750	49431750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	83	1022	0	ENST00000301067.7:c.9389C>T	p.Ser3130Phe	p.S3130F	ENST00000301067	NM_003482.3	3130	tCt/tTt																																																																															
TET2	54790	MSKCC	GRCh37	4	106155410	106155410	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	36	359	0	ENST00000380013.4:c.311C>G	p.Ser104Cys	p.S104C	ENST00000380013	NM_001127208.2	104	tCt/tGt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645064	86645064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	59	294	0	ENST00000274376.6:c.1136C>T	p.Ser379Leu	p.S379L	ENST00000274376	NM_002890.2	379	tCa/tTa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16174605	16174605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	92	454	1	ENST00000375759.3:c.43G>A	p.Glu15Lys	p.E15K	ENST00000375759	NM_015001.2	15	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16174625	16174625	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	85	417	0	ENST00000375759.3:c.63G>C	p.Lys21Asn	p.K21N	ENST00000375759	NM_015001.2	21	aaG/aaC																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27102121	27102121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	92	576	0	ENST00000324856.7:c.5047G>C	p.Glu1683Gln	p.E1683Q	ENST00000324856	NM_006015.4	1683	Gag/Cag																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46725704	46725704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	38	632	1	ENST00000371975.4:c.340G>A	p.Glu114Lys	p.E114K	ENST00000371975	NM_003579.3	114	Gaa/Aaa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344443	118344443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	41	261	0	ENST00000534358.1:c.2569G>A	p.Glu857Lys	p.E857K	ENST00000534358	NM_005933.3	857	Gag/Aag																																																																															
FLT1	2321	MSKCC	GRCh37	13	28913333	28913333	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	94	597	1	ENST00000282397.4:c.2460G>A	p.Trp820Ter	p.W820*	ENST00000282397	NM_002019.4	820	tgG/tgA																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428326	33428326	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	137	803	1	ENST00000335858.7:c.461G>T	p.Arg154Leu	p.R154L	ENST00000335858	NM_133629.2	154	cGc/cTc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41209077	41209077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	79	665	0	ENST00000357654.3:c.5269G>A	p.Asp1757Asn	p.D1757N	ENST00000357654	NM_007294.3	1757	Gac/Aac																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25466772	25466772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	103	724	0	ENST00000264709.3:c.1931C>T	p.Ala644Val	p.A644V	ENST00000264709	NM_175629.2	644	gCt/gTt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027113	48027113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	51	454	1	ENST00000234420.5:c.1991C>T	p.Ser664Leu	p.S664L	ENST00000234420	NM_000179.2	664	tCa/tTa																																																																															
KDR	3791	MSKCC	GRCh37	4	55955093	55955093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	92	508	0	ENST00000263923.4:c.3452C>A	p.Pro1151His	p.P1151H	ENST00000263923	NM_002253.2	1151	cCc/cAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201767	66201767	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	78	493	0	ENST00000273854.3:c.2735T>A	p.Leu912Gln	p.L912Q	ENST00000273854	NM_004439.5	912	cTg/cAg																																																																															
TERT	7015	MSKCC	GRCh37	5	1294454	1294454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	51	942	0	ENST00000310581.5:c.547C>A	p.Gln183Lys	p.Q183K	ENST00000310581	NM_198253.2	183	Cag/Aag																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056119	26056119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	16	570	0	ENST00000343677.2:c.538G>A	p.Ala180Thr	p.A180T	ENST00000343677	NM_005319.3	180	Gcg/Acg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275767	38275767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	94	704	1	ENST00000425967.3:c.1502G>T	p.Arg501Leu	p.R501L	ENST00000425967	NM_001174067.1	501	cGc/cTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401341	139401341	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	177	1243	1	ENST00000277541.6:c.3728C>G	p.Thr1243Ser	p.T1243S	ENST00000277541	NM_017617.3	1243	aCc/aGc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793285	139793285	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	52	1020	0	ENST00000247668.2:c.93G>C	p.Lys31Asn	p.K31N	ENST00000247668	NM_021138.3	31	aaG/aaC																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	382	835	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737345	145737345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	264	1038	0	ENST00000428558.2:c.3342G>T	p.Gln1114His	p.Q1114H	ENST00000428558	NM_004260.3	1114	caG/caT																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	55	324	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	134	591	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
FLT4	2324	MSKCC	GRCh37	5	180055897	180055897	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	173	736	1	ENST00000261937.6:c.1088del	p.Pro363ArgfsTer27	p.P363Rfs*27	ENST00000261937	NM_182925.4	363	cCg/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578412	7578412	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519747		P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	224	841	0	ENST00000269305.4:c.518T>C	p.Val173Ala	p.V173A	ENST00000269305	NM_001126112.2	173	gTg/gCg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720654	89720654	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	82	453	0	ENST00000371953.3:c.808del	p.Met270CysfsTer6	p.M270Cfs*6	ENST00000371953	NM_000314.4	269	Aaa/aa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104893810		P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	127	421	0	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																																																															
RB1	5925	MSKCC	GRCh37	13	48942685	48942685	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913301		P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	40	213	0	ENST00000267163.4:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000267163	NM_000321.2	358	Cga/Tga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	244	426	6	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089705	27089706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1286891446		P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	169	723	0	ENST00000324856.7:c.2666dup	p.Met890HisfsTer46	p.M890Hfs*46	ENST00000324856	NM_006015.4	887	-/G																																																																															
BCL10	8915	MSKCC	GRCh37	1	85736510	85736511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs387906351		P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	61	278	1	ENST00000370580.1:c.136dup	p.Ile46AsnfsTer4	p.I46Nfs*4	ENST00000370580	NM_003921.4	46	ata/aAta																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262680	16262680	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	122	472	3	ENST00000375759.3:c.9950del	p.Pro3317ArgfsTer83	p.P3317Rfs*83	ENST00000375759	NM_015001.2	3315	caC/ca																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337684	73337684	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771690280		P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	35	166	0	ENST00000377767.4:c.2032del	p.Ile678PhefsTer59	p.I678Ffs*59	ENST00000377767	NM_014953.3	678	Att/tt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372093	55372093	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	114	348	1	ENST00000297316.4:c.788del	p.Pro263ArgfsTer124	p.P263Rfs*124	ENST00000297316	NM_022454.3	261	ggC/gg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5207965	5207965	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	250	980	0	ENST00000357368.4:c.5746C>T	p.Arg1916Ter	p.R1916*	ENST00000357368	NM_002850.3	1916	Cga/Tga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15971252	15971252	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs118021690		P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	161	541	0	ENST00000268712.3:c.4697C>T	p.Thr1566Met	p.T1566M	ENST00000268712	NM_006311.3	1566	aCg/aTg																																																																															
B2M	567	MSKCC	GRCh37	15	45007741	45007742	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	79	315	0	ENST00000558401.1:c.194_195del	p.Arg65AsnfsTer2	p.R65Nfs*2	ENST00000558401	NM_004048.2	63	gGA/g																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	109	459	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578284	7578284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	164	743	0	ENST00000269305.4:c.565G>C	p.Ala189Pro	p.A189P	ENST00000269305	NM_001126112.2	189	Gcc/Ccc																																																																															
MGA	23269	MSKCC	GRCh37	15	42021366	42021366	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772780139		P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	66	298	0	ENST00000219905.7:c.3662G>A	p.Arg1221Gln	p.R1221Q	ENST00000219905	NM_001164273.1	1221	cGg/cAg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6035204	6035207	+	frameshift_variant	Frame_Shift_Del	DEL	CTGT	CTGT	-	rs267608154		P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	96	357	0	ENST00000265849.7:c.861_864del	p.Arg287SerfsTer19	p.R287Sfs*19	ENST00000265849	NM_000535.5	287	agACAG/ag																																																																															
EP300	2033	MSKCC	GRCh37	22	41525977	41525977	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	95	348	0	ENST00000263253.7:c.1256del	p.Asn419MetfsTer12	p.N419Mfs*12	ENST00000263253	NM_001429.3	418	Aaa/aa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205092	38205092	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	101	558	1	ENST00000317025.8:c.598del	p.Ser200AlafsTer20	p.S200Afs*20	ENST00000317025	NM_023034.1	200	Agc/gc																																																																															
PARP1	142	MSKCC	GRCh37	1	226564886	226564886	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	134	430	0	ENST00000366794.5:c.1864del	p.Thr622ProfsTer31	p.T622Pfs*31	ENST00000366794	NM_001618.3	622	Acc/cc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391121	89391121	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	121	512	0	ENST00000336596.2:c.1187T>C	p.Val396Ala	p.V396A	ENST00000336596	NM_005233.5	396	gTg/gCg																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30309628	30309628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	170	686	0	ENST00000307677.4:c.394C>T	p.Arg132Trp	p.R132W	ENST00000307677	NM_138578.1	132	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427276	49427276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	197	733	0	ENST00000301067.7:c.11212C>T	p.Gln3738Ter	p.Q3738*	ENST00000301067	NM_003482.3	3738	Cag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29657409	29657409	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1465309384		P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	123	499	0	ENST00000358273.4:c.5705C>T	p.Ala1902Val	p.A1902V	ENST00000358273	NM_001042492.2	1902	gCc/gTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600416	10600416	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1021362446		P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	216	837	2	ENST00000171111.5:c.1439G>A	p.Gly480Glu	p.G480E	ENST00000171111	NM_203500.1	480	gGg/gAg																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2494317	2494317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	194	913	1	ENST00000355716.4:c.708G>T	p.Lys236Asn	p.K236N	ENST00000355716	NM_003820.2	236	aaG/aaT																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782381	9782381	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149376192		P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	84	906	0	ENST00000377346.4:c.2314G>A	p.Gly772Ser	p.G772S	ENST00000377346	NM_005026.3	772	Ggc/Agc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118368718	118368718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	75	409	0	ENST00000534358.1:c.5732C>T	p.Ala1911Val	p.A1911V	ENST00000534358	NM_005933.3	1911	gCg/gTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374639	118374639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	86	346	0	ENST00000534358.1:c.8032G>A	p.Asp2678Asn	p.D2678N	ENST00000534358	NM_005933.3	2678	Gat/Aat																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438268	110438268	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	43	136	0	ENST00000375856.3:c.133A>G	p.Lys45Glu	p.K45E	ENST00000375856	NM_003749.2	45	Aag/Gag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99192836	99192836	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	165	525	0	ENST00000268035.6:c.29del	p.Pro10ArgfsTer37	p.P10Rfs*37	ENST00000268035	NM_000875.3	9	tCc/tc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858630	9858630	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	144	504	0	ENST00000330684.3:c.2771T>C	p.Phe924Ser	p.F924S	ENST00000330684	NM_001134407.1	924	tTc/tCc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101109	41101109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	174	763	0	ENST00000373198.4:c.1247G>A	p.Arg416His	p.R416H	ENST00000373198	NM_133170.3	416	cGc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385165	41385165	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753257334		P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	221	772	0	ENST00000373198.4:c.796C>T	p.Arg266Cys	p.R266C	ENST00000373198	NM_133170.3	266	Cgc/Tgc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181431016	181431016	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	229	852	0	ENST00000325404.1:c.868A>G	p.Ser290Gly	p.S290G	ENST00000325404	NM_003106.3	290	Agc/Ggc																																																																															
TP63	8626	MSKCC	GRCh37	3	189608586	189608586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	126	485	1	ENST00000264731.3:c.1661C>T	p.Ala554Val	p.A554V	ENST00000264731	NM_003722.4	554	gCg/gTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217294	66217294	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	54	247	0	ENST00000273854.3:c.2321T>C	p.Val774Ala	p.V774A	ENST00000273854	NM_004439.5	774	gTg/gCg																																																																															
TET2	54790	MSKCC	GRCh37	4	106157654	106157654	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	60	216	0	ENST00000380013.4:c.2555A>G	p.Glu852Gly	p.E852G	ENST00000380013	NM_001127208.2	852	gAa/gGa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056323	26056323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	125	422	0	ENST00000343677.2:c.334G>T	p.Ala112Ser	p.A112S	ENST00000343677	NM_005319.3	112	Gcc/Tcc																																																																															
HGF	3082	MSKCC	GRCh37	7	81332070	81332070	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	41	163	0	ENST00000222390.5:c.2014del	p.Asp672IlefsTer13	p.D672Ifs*13	ENST00000222390	NM_000601.4	672	Gat/at																																																																															
SMO	6608	MSKCC	GRCh37	7	128829185	128829185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	87	208	0	ENST00000249373.3:c.193G>A	p.Gly65Ser	p.G65S	ENST00000249373	NM_005631.4	65	Ggc/Agc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738954	145738954	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	169	692	2	ENST00000428558.2:c.2200+1G>A		p.X734_splice	ENST00000428558	NM_004260.3	734																																																																																
PTCH1	5727	MSKCC	GRCh37	9	98229678	98229678	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	68	238	0	ENST00000331920.6:c.2280G>T	p.Leu760Phe	p.L760F	ENST00000331920	NM_000264.3	760	ttG/ttT																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245258	53245258	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0057735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	168	785	0	ENST00000375401.3:c.779A>C	p.Lys260Thr	p.K260T	ENST00000375401	NM_004187.3	260	aAa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs770776262		P-0057737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	23	947	0	ENST00000269305.4:c.321C>A	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taA																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508389	106508389	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758375337		P-0057737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	19	412	0	ENST00000359195.3:c.383C>T	p.Thr128Met	p.T128M	ENST00000359195	NM_002649.2	128	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0057740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	506	440	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1976689	1976689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	191	745	0	ENST00000382891.5:c.3472G>A	p.Asp1158Asn	p.D1158N	ENST00000382891	NM_133335.3	1158	Gac/Aac																																																																															
PARK2	5071	MSKCC	GRCh37	6	161970034	161970034	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0057740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	91	705	0	ENST00000366898.1:c.935A>G	p.Tyr312Cys	p.Y312C	ENST00000366898	NM_004562.2	312	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0057742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	75	345	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0057743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	24	375	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0057743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	156	753	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0057743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	105	423	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
NF2	4771	MSKCC	GRCh37	22	30070877	30070877	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	124	763	0	ENST00000338641.4:c.1393G>C	p.Glu465Gln	p.E465Q	ENST00000338641	NM_000268.3	465	Gag/Cag																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80336255	80336255	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	49	387	0	ENST00000286548.4:c.1064A>T	p.Glu355Val	p.E355V	ENST00000286548	NM_002072.3	355	gAg/gTg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123195163	123195163	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	46	450	1	ENST00000218089.9:c.1506A>T	p.Leu502Phe	p.L502F	ENST00000218089	NM_001042749.1	502	ttA/ttT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0057745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	39	356	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753660142		P-0057745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	58	822	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	54	838	0	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0057747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	39	351	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255160	16255160	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	39	360	0	ENST00000375759.3:c.2425A>G	p.Ile809Val	p.I809V	ENST00000375759	NM_015001.2	809	Ata/Gta																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5208327	5208327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	89	894	1	ENST00000357368.4:c.5563G>T	p.Gly1855Cys	p.G1855C	ENST00000357368	NM_002850.3	1855	Ggc/Tgc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47144879	47144879	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	106	411	0	ENST00000409792.3:c.4874G>T	p.Arg1625Leu	p.R1625L	ENST00000409792	NM_014159.6	1625	cGt/cTt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499326	89499326	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0057747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	39	352	0	ENST00000336596.2:c.2497-1G>A		p.X833_splice	ENST00000336596	NM_005233.5	833																																																																																
INPP4B	8821	MSKCC	GRCh37	4	142949993	142949993	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	60	409	1	ENST00000262992.4:c.2717T>A	p.Met906Lys	p.M906K	ENST00000262992	NM_001101669.1	906	aTg/aAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499818	8499818	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	26	459	0	ENST00000356435.5:c.2151A>T	p.Lys717Asn	p.K717N	ENST00000356435		717	aaA/aaT																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020662	37020662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	50	444	0	ENST00000358127.4:c.183C>A	p.Ser61Arg	p.S61R	ENST00000358127	NM_001280556.1	61	agC/agA																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30093397	30093397	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	23	574	0	ENST00000331968.5:c.1866A>C	p.Lys622Asn	p.K622N	ENST00000331968	NM_002742.2	622	aaA/aaC																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717696	89717696	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0057758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	204	435	0	ENST00000371953.3:c.723del	p.Phe241LeufsTer15	p.F241Lfs*15	ENST00000371953	NM_000314.4	241	Ttt/tt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375019	45375019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	72	379	0	ENST00000262160.6:c.824G>C	p.Cys275Ser	p.C275S	ENST00000262160	NM_005901.5	275	tGt/tCt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25991662	25991662	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	85	441	0	ENST00000435504.4:c.580C>G	p.Leu194Val	p.L194V	ENST00000435504		194	Ctc/Gtc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38139086	38139086	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	99	380	0	ENST00000317025.8:c.3517G>C	p.Glu1173Gln	p.E1173Q	ENST00000317025	NM_023034.1	1173	Gaa/Caa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111794	56111794	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs557606535		P-0054221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	14	3	0	ENST00000399503.3:c.394G>C	p.Asp132His	p.D132H	ENST00000399503	NM_005921.1	132	Gac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579449	7579455	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCTGC	GAGCTGC	-			P-0054221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	264	1098	0	ENST00000269305.4:c.232_238del	p.Ala78LeufsTer43	p.A78Lfs*43	ENST00000269305	NM_001126112.2	78	GCAGCTCct/ct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0056792-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			125	304	368	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610136	10610136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056792-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			401	568	948	1	ENST00000171111.5:c.574G>A	p.Glu192Lys	p.E192K	ENST00000171111	NM_203500.1	192	Gag/Aag																																																																															
STK11	6794	MSKCC	GRCh37	19	1220370	1220370	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0056792-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			281	514	797	0	ENST00000326873.7:c.465-2A>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
SOCS1	8651	MSKCC	GRCh37	16	11349314	11349314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056792-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			398	140	501	0	ENST00000332029.2:c.22G>A	p.Ala8Thr	p.A8T	ENST00000332029	NM_003745.1	8	Gca/Aca																																																																															
NBN	4683	MSKCC	GRCh37	8	90960096	90960096	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs962092255		P-0056792-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			227	66	252	0	ENST00000265433.3:c.1870C>T	p.Arg624Cys	p.R624C	ENST00000265433	NM_002485.4	624	Cgt/Tgt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210491	2210491	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056792-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			402	624	1182	0	ENST00000398665.3:c.1101del	p.Ala368ProfsTer19	p.A368Pfs*19	ENST00000398665	NM_032482.2	366	ggC/gg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374971	45374972	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0056792-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			478	148	542	0	ENST00000262160.6:c.871dup	p.His291ProfsTer30	p.H291Pfs*30	ENST00000262160	NM_005901.5	291	cat/cCat																																																																															
BARD1	580	MSKCC	GRCh37	2	215645621	215645621	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs779960429		P-0056792-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			409	221	644	0	ENST00000260947.4:c.977A>G	p.Asn326Ser	p.N326S	ENST00000260947	NM_000465.2	326	aAt/aGt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485445	57485445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056792-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	122	342	0	ENST00000371085.3:c.1027G>A	p.Asp343Asn	p.D343N	ENST00000371085	NM_000516.4	343	Gat/Aat																																																																															
NF2	4771	MSKCC	GRCh37	22	30069257	30069257	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0056792-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			232	392	640	1	ENST00000338641.4:c.1123-1G>T		p.X375_splice	ENST00000338641	NM_000268.3	375																																																																																
FAT1	2195	MSKCC	GRCh37	4	187517865	187517865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056792-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			454	55	532	0	ENST00000441802.2:c.12829G>A	p.Ala4277Thr	p.A4277T	ENST00000441802	NM_005245.3	4277	Gct/Act																																																																															
JAK2	3717	MSKCC	GRCh37	9	5022114	5022114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056792-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			277	141	535	0	ENST00000381652.3:c.127C>T	p.Leu43Phe	p.L43F	ENST00000381652	NM_004972.3	43	Ctt/Ttt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0056795-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			294	290	315	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207190	1207190	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056795-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			208	589	939	0	ENST00000326873.7:c.279del	p.Asn94ThrfsTer2	p.N94Tfs*2	ENST00000326873	NM_000455.4	93	gCc/gc																																																																															
ATM	472	MSKCC	GRCh37	11	108186594	108186594	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0056795-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			128	331	362	0	ENST00000278616.4:c.6051T>A	p.Ser2017Arg	p.S2017R	ENST00000278616	NM_000051.3	2017	agT/agA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446025	49446025	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056795-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	657	1405	0	ENST00000301067.7:c.1441G>C	p.Glu481Gln	p.E481Q	ENST00000301067	NM_003482.3	481	Gag/Cag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	141	345	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	193	497	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			456	242	585	3	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			291	231	530	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239927	98239927	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1438523462		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			310	179	504	2	ENST00000331920.6:c.1405G>A	p.Val469Met	p.V469M	ENST00000331920	NM_000264.3	469	Gtg/Atg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			260	96	283	0	ENST00000303115.3:c.361del	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346884	73346884	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			199	86	211	2	ENST00000377767.4:c.1333del	p.Ser445HisfsTer20	p.S445Hfs*20	ENST00000377767	NM_014953.3	445	Tca/ca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099008	27099008	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			370	226	556	0	ENST00000324856.7:c.3424C>T	p.Gln1142Ter	p.Q1142*	ENST00000324856	NM_006015.4	1142	Cag/Tag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			526	237	812	4	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509006	106509006	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201525740		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			462	39	575	0	ENST00000359195.3:c.1000G>A	p.Gly334Ser	p.G334S	ENST00000359195	NM_002649.2	334	Ggc/Agc																																																																															
AKT1	207	MSKCC	GRCh37	14	105243045	105243045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			606	349	1104	0	ENST00000349310.3:c.238T>C	p.Trp80Arg	p.W80R	ENST00000349310	NM_001014432.1	80	Tgg/Cgg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			815	99	1186	5	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455090	50455090	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			244	111	330	0	ENST00000331340.3:c.637C>T	p.Arg213Ter	p.R213*	ENST00000331340	NM_006060.4	213	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			474	347	849	1	ENST00000407977.2:c.349del	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			402	261	678	3	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			366	57	467	1	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			142	89	402	5	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	144	366	2	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255883	16255883	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	192	429	0	ENST00000375759.3:c.3154del	p.Ile1052SerfsTer40	p.I1052Sfs*40	ENST00000375759	NM_015001.2	1050	Aaa/aa																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910372	29910372	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	376	1630	3	ENST00000376809.5:c.46del	p.Ala16ProfsTer4	p.A16Pfs*4	ENST00000376809	NM_002116.7	14	tcG/tc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993730	72993731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769936196		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			417	178	818	1	ENST00000268489.5:c.314dup	p.Pro106AlafsTer13	p.P106Afs*13	ENST00000268489	NM_006885.3	105	ccg/ccCg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs769210858		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			506	282	985	2	ENST00000361632.4:c.1404del	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37872836	37872836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			499	273	913	1	ENST00000269571.5:c.1715G>A	p.Gly572Asp	p.G572D	ENST00000269571		572	gGc/gAc																																																																															
ARAF	369	MSKCC	GRCh37	X	47424734	47424734	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	34	736	0	ENST00000377045.4:c.547del	p.Gln183ArgfsTer109	p.Q183Rfs*109	ENST00000377045	NM_001654.4	181	aCc/ac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			282	209	499	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270530	98270530	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1057518664		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			313	18	307	0	ENST00000331920.6:c.114del	p.Leu39CysfsTer41	p.L39Cfs*41	ENST00000331920	NM_000264.3	38	ggG/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440757	56440757	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774211426		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	211	651	0	ENST00000407977.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000407977		154	cCg/cTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			155	276	347	6	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952088	178952088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	118	333	0	ENST00000263967.3:c.3143A>G	p.His1048Arg	p.H1048R	ENST00000263967	NM_006218.2	1048	cAt/cGt																																																																															
POLE	5426	MSKCC	GRCh37	12	133254166	133254166	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs371882716		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			325	261	506	0	ENST00000320574.5:c.718G>A	p.Val240Met	p.V240M	ENST00000320574	NM_006231.2	240	Gtg/Atg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262139	10262139	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			769	53	783	5	ENST00000340748.4:c.2152del	p.Met718CysfsTer59	p.M718Cfs*59	ENST00000340748		718	Atg/tg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655425	45655425	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767656796		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			575	335	819	1	ENST00000407780.3:c.427G>A	p.Val143Ile	p.V143I	ENST00000407780	NM_001283052.1	143	Gtc/Atc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665446	138665446	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			410	227	730	0	ENST00000330315.3:c.119del	p.Gly40ValfsTer110	p.G40Vfs*110	ENST00000330315	NM_023067.3	40	gGt/gt																																																																															
MED12	9968	MSKCC	GRCh37	X	70357715	70357715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			517	271	905	2	ENST00000374080.3:c.5966G>A	p.Arg1989His	p.R1989H	ENST00000374080		1989	cGc/cAc																																																																															
CASP8	841	MSKCC	GRCh37	2	202150039	202150039	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs1368296717		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			581	56	583	0	ENST00000358485.4:c.1480C>T	p.Arg494Ter	p.R494*	ENST00000358485	NM_001080125.1	494	Cga/Tga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530048	63530048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	35	535	1	ENST00000307078.5:c.2387G>A	p.Ser796Asn	p.S796N	ENST00000307078	NM_004655.3	796	aGc/aAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			568	178	907	0	ENST00000407977.2:c.1975_1976dup	p.Pro660ValfsTer41	p.P660Vfs*41	ENST00000407977		659	ggt/ggGGt																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15821896	15821896	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	81	290	0	ENST00000307771.7:c.294del	p.Lys98AsnfsTer10	p.K98Nfs*10	ENST00000307771	NM_005089.3	97	Aaa/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821632	72821632	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758349575		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			42	11	65	1	ENST00000268489.5:c.10543G>A	p.Gly3515Ser	p.G3515S	ENST00000268489	NM_006885.3	3515	Ggc/Agc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354308	354308	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757610038		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			504	284	839	1	ENST00000262320.3:c.1250G>A	p.Arg417His	p.R417H	ENST00000262320	NM_003502.3	417	cGc/cAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2127724	2127724	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397515306		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			349	219	573	0	ENST00000219476.3:c.2963G>A	p.Arg988His	p.R988H	ENST00000219476	NM_000548.3	988	cGc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255141	16255142	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			354	157	415	5	ENST00000375759.3:c.2417_2418dup	p.Arg807AspfsTer3	p.R807Dfs*3	ENST00000375759	NM_015001.2	802	-/GA																																																																															
AKT1	207	MSKCC	GRCh37	14	105239279	105239279	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs549370342		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			535	303	901	0	ENST00000349310.3:c.1108C>T	p.Arg370Cys	p.R370C	ENST00000349310	NM_001014432.1	370	Cgc/Tgc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396475	30396475	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1474657301		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			298	121	432	0	ENST00000331968.5:c.244T>C	p.Cys82Arg	p.C82R	ENST00000331968	NM_002742.2	82	Tgc/Cgc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109903	115109903	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1182290035		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			248	177	506	0	ENST00000257566.3:c.1975G>A	p.Ala659Thr	p.A659T	ENST00000257566	NM_016569.3	659	Gcc/Acc																																																																															
RHEB	6009	MSKCC	GRCh37	7	151188085	151188085	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867628277		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			331	162	404	0	ENST00000262187.5:c.68C>T	p.Thr23Met	p.T23M	ENST00000262187	NM_005614.3	23	aCg/aTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919865	50919866	+	splice_acceptor_variant	Splice_Site	INS	-	-	G	rs756872503		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			534	264	975	3	ENST00000440232.2:c.2959dup		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
TBX3	6926	MSKCC	GRCh37	12	115109795	115109795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			470	258	722	0	ENST00000257566.3:c.2083C>A	p.Arg695Ser	p.R695S	ENST00000257566	NM_016569.3	695	Cgc/Agc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900081	151900081	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			316	162	430	0	ENST00000262189.6:c.4030del	p.Ile1344Ter	p.I1344*	ENST00000262189	NM_170606.2	1344	Ata/ta																																																																															
SPEN	23013	MSKCC	GRCh37	1	16203172	16203172	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			441	25	344	0	ENST00000375759.3:c.880A>G	p.Ser294Gly	p.S294G	ENST00000375759	NM_015001.2	294	Agc/Ggc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970916	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			479	212	585	0	ENST00000265081.6:c.1147_1148del	p.Lys383GlyfsTer20	p.K383Gfs*20	ENST00000265081	NM_002439.4	381	AAa/a																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187719	11187719	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767904339		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			684	36	705	2	ENST00000361445.4:c.6178C>T	p.Arg2060Trp	p.R2060W	ENST00000361445	NM_004958.3	2060	Cgg/Tgg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502612	149502612	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			290	137	512	0	ENST00000261799.4:c.2176del	p.Leu726CysfsTer7	p.L726Cfs*7	ENST00000261799	NM_002609.3	726	Ctg/tg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102206715	102206715	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759842920		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	137	319	0	ENST00000263464.3:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000263464	NM_001165.4	448	cGg/cAg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128199903	128199903	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777726701		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			591	32	785	0	ENST00000341105.2:c.1402G>A	p.Gly468Ser	p.G468S	ENST00000341105	NM_032638.4	468	Ggc/Agc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100086	27100086	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			644	130	845	0	ENST00000324856.7:c.3882A>G	p.Ile1294Met	p.I1294M	ENST00000324856	NM_006015.4	1294	atA/atG																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073712	8073712	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs374638182		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			432	23	388	0	ENST00000377482.5:c.947C>A	p.Pro316His	p.P316H	ENST00000377482	NM_018948.3	316	cCt/cAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132815	152132815	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			399	236	573	4	ENST00000262189.6:c.57del	p.Glu20ArgfsTer85	p.E20Rfs*85	ENST00000262189	NM_170606.2	19	ccC/cc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40872306	40872306	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs781642151		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			451	272	628	0	ENST00000428826.2:c.649C>T	p.Arg217Ter	p.R217*	ENST00000428826		217	Cga/Tga																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626119	12626119	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1358060804		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			304	164	424	1	ENST00000251849.4:c.1841C>T	p.Pro614Leu	p.P614L	ENST00000251849	NM_002880.3	614	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112176984	112176984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			263	123	357	0	ENST00000257430.4:c.5693C>T	p.Thr1898Ile	p.T1898I	ENST00000257430	NM_000038.5	1898	aCa/aTa																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025564	1025564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			506	290	855	1	ENST00000358495.3:c.811C>T	p.Arg271Trp	p.R271W	ENST00000358495	NM_134424.2	271	Cgg/Tgg																																																																															
MED12	9968	MSKCC	GRCh37	X	70344949	70344949	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs192331892		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			425	233	783	0	ENST00000374080.3:c.2179G>A	p.Asp727Asn	p.D727N	ENST00000374080		727	Gac/Aac																																																																															
RET	5979	MSKCC	GRCh37	10	43609103	43609103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77503355		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	319	1023	0	ENST00000355710.3:c.1859G>A	p.Cys620Tyr	p.C620Y	ENST00000355710	NM_020975.4	620	tGc/tAc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222294	2222294	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751408271		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			520	294	995	1	ENST00000326181.6:c.578G>A	p.Arg193Gln	p.R193Q	ENST00000326181	NM_032271.2	193	cGg/cAg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11294297	11294297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			397	230	550	0	ENST00000361445.4:c.2234G>A	p.Gly745Glu	p.G745E	ENST00000361445	NM_004958.3	745	gGg/gAg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465063	120465063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			299	75	347	0	ENST00000256646.2:c.5009C>T	p.Ser1670Phe	p.S1670F	ENST00000256646	NM_024408.3	1670	tCc/tTc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466350	120466350	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			556	45	592	0	ENST00000256646.2:c.4769A>G	p.Tyr1590Cys	p.Y1590C	ENST00000256646	NM_024408.3	1590	tAc/tGc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123276971	123276971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	21	294	0	ENST00000358487.5:c.946G>A	p.Gly316Ser	p.G316S	ENST00000358487	NM_000141.4	316	Ggt/Agt																																																																															
PGR	5241	MSKCC	GRCh37	11	100998652	100998652	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1345400480		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			439	242	834	1	ENST00000325455.5:c.1150G>A	p.Ala384Thr	p.A384T	ENST00000325455	NM_001202474.3	384	Gct/Act																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118366501	118366501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			381	26	367	0	ENST00000534358.1:c.5450C>T	p.Thr1817Ile	p.T1817I	ENST00000534358	NM_005933.3	1817	aCt/aTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445406	49445406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			628	432	1242	1	ENST00000301067.7:c.2060C>T	p.Ser687Leu	p.S687L	ENST00000301067	NM_003482.3	687	tCa/tTa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476351	88476351	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	206	714	0	ENST00000360948.2:c.1781A>T	p.Asn594Ile	p.N594I	ENST00000360948	NM_001012338.2	594	aAc/aTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9984947	9984947	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			294	148	507	0	ENST00000330684.3:c.1018A>G	p.Asn340Asp	p.N340D	ENST00000330684	NM_001134407.1	340	Aat/Gat																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81960706	81960706	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			372	186	564	0	ENST00000359376.3:c.2437A>G	p.Thr813Ala	p.T813A	ENST00000359376	NM_002661.3	813	Acc/Gcc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657690	37657690	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			246	151	382	0	ENST00000447079.4:c.2607C>A	p.Asn869Lys	p.N869K	ENST00000447079	NM_015083.1	869	aaC/aaA																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440723	56440723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			413	265	714	0	ENST00000407977.2:c.495G>T	p.Trp165Cys	p.W165C	ENST00000407977		165	tgG/tgT																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622201	1622201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			509	273	1045	1	ENST00000344749.5:c.674C>T	p.Ala225Val	p.A225V	ENST00000344749	NM_001136139.2	225	gCc/gTc																																																																															
INSR	3643	MSKCC	GRCh37	19	7117135	7117135	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			480	237	823	0	ENST00000302850.5:c.4081T>C	p.Tyr1361His	p.Y1361H	ENST00000302850	NM_000208.2	1361	Tac/Cac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11107173	11107173	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765850087		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			459	257	593	0	ENST00000344626.4:c.1765G>A	p.Ala589Thr	p.A589T	ENST00000344626	NM_003072.3	589	Gca/Aca																																																																															
UPF1	5976	MSKCC	GRCh37	19	18943170	18943170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			88	58	127	0	ENST00000262803.5:c.152C>T	p.Pro51Leu	p.P51L	ENST00000262803	NM_002911.3	51	cCc/cTc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976538	18976538	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			758	133	1050	0	ENST00000262803.5:c.3188A>T	p.Gln1063Leu	p.Q1063L	ENST00000262803	NM_002911.3	1063	cAg/cTg																																																																															
AXL	558	MSKCC	GRCh37	19	41759556	41759556	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	282	814	1	ENST00000301178.4:c.1979T>C	p.Met660Thr	p.M660T	ENST00000301178	NM_021913.4	660	aTg/aCg																																																																															
BBC3	27113	MSKCC	GRCh37	19	47725167	47725167	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1164583207		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			918	65	1058	0	ENST00000449228.1:c.577G>A	p.Gly193Arg	p.G193R	ENST00000449228	NM_001127240.2	193	Gga/Aga																																																																															
MSH2	4436	MSKCC	GRCh37	2	47656919	47656919	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			255	143	300	0	ENST00000233146.2:c.1115T>C	p.Leu372Ser	p.L372S	ENST00000233146	NM_000251.2	372	tTg/tCg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99172021	99172021	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			531	79	548	0	ENST00000074304.5:c.1587A>C	p.Lys529Asn	p.K529N	ENST00000074304	NM_001134224.1	529	aaA/aaC																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873131	136873131	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			422	28	447	0	ENST00000241393.3:c.367A>G	p.Ser123Gly	p.S123G	ENST00000241393	NM_003467.2	123	Agt/Ggt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017781	31017781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			669	58	877	0	ENST00000375687.4:c.643G>A	p.Ala215Thr	p.A215T	ENST00000375687	NM_015338.5	215	Gct/Act																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41514548	41514548	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			402	40	495	0	ENST00000373198.4:c.113A>G	p.Tyr38Cys	p.Y38C	ENST00000373198	NM_133170.3	38	tAc/tGc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46256423	46256423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	154	389	0	ENST00000371998.3:c.651G>A	p.Met217Ile	p.M217I	ENST00000371998		217	atG/atA																																																																															
ERG	2078	MSKCC	GRCh37	21	39817376	39817376	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			495	38	628	0	ENST00000288319.7:c.187A>G	p.Arg63Gly	p.R63G	ENST00000288319	NM_182918.3	63	Agg/Ggg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52582171	52582171	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			481	29	405	0	ENST00000394830.3:c.4657A>G	p.Thr1553Ala	p.T1553A	ENST00000394830	NM_018313.4	1553	Acc/Gcc																																																																															
KIT	3815	MSKCC	GRCh37	4	55598058	55598058	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			430	85	421	0	ENST00000288135.5:c.2255T>C	p.Val752Ala	p.V752A	ENST00000288135	NM_000222.2	752	gTg/gCg																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99806113	99806113	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			116	18	135	0	ENST00000280892.6:c.559A>G	p.Thr187Ala	p.T187A	ENST00000280892	NM_001130678.1	187	Act/Gct																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588126	67588126	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs781439997		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	128	307	0	ENST00000274335.5:c.956A>G	p.Asn319Ser	p.N319S	ENST00000274335		319	aAc/aGc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591276	67591278	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	175	300	0	ENST00000274335.5:c.1777_1779del	p.Lys593del	p.K593del	ENST00000274335		592	AAG/-																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522600	176522601	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1225914389		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			507	260	1032	0	ENST00000292408.4:c.1703dup	p.Gly569ArgfsTer13	p.G569Rfs*13	ENST00000292408	NM_213647.1	566	cgc/cgCc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562730	176562730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			477	204	484	0	ENST00000439151.2:c.626G>A	p.Ser209Asn	p.S209N	ENST00000439151	NM_022455.4	209	aGt/aAt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188370	32188370	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			474	257	878	0	ENST00000375023.3:c.971del	p.Pro324LeufsTer21	p.P324Lfs*21	ENST00000375023	NM_004557.3	324	cCt/ct																																																																															
PARK2	5071	MSKCC	GRCh37	6	161990416	161990416	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	146	459	0	ENST00000366898.1:c.904C>A	p.His302Asn	p.H302N	ENST00000366898	NM_004562.2	302	Cat/Aat																																																																															
BRAF	673	MSKCC	GRCh37	7	140507809	140507809	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	174	409	0	ENST00000288602.6:c.662A>G	p.Glu221Gly	p.E221G	ENST00000288602	NM_004333.4	221	gAa/gGa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371820	55371820	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			92	27	48	0	ENST00000297316.4:c.512del	p.Gly171AlafsTer216	p.G171Afs*216	ENST00000297316	NM_022454.3	170	gaG/ga																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020506	69020506	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1287337314		P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			399	326	580	0	ENST00000288368.4:c.2878G>A	p.Val960Ile	p.V960I	ENST00000288368	NM_024870.2	960	Gtt/Att																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5549369	5549369	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	39	583	0	ENST00000397747.3:c.396G>T	p.Lys132Asn	p.K132N	ENST00000397747	NM_025239.3	132	aaG/aaT																																																																															
AR	367	MSKCC	GRCh37	X	66765386	66765386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			386	226	831	0	ENST00000374690.3:c.398C>A	p.Pro133Gln	p.P133Q	ENST00000374690	NM_000044.3	133	cCa/cAa																																																																															
MED12	9968	MSKCC	GRCh37	X	70342639	70342639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			729	52	655	0	ENST00000374080.3:c.1400G>A	p.Ser467Asn	p.S467N	ENST00000374080		467	aGt/aAt																																																																															
ATRX	546	MSKCC	GRCh37	X	76938711	76938711	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			446	227	641	0	ENST00000373344.5:c.2037A>C	p.Glu679Asp	p.E679D	ENST00000373344	NM_000489.3	679	gaA/gaC																																																																															
BTK	695	MSKCC	GRCh37	X	100615578	100615578	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	134	513	0	ENST00000308731.7:c.754T>C	p.Trp252Arg	p.W252R	ENST00000308731	NM_000061.2	252	Tgg/Cgg																																																																															
XIAP	331	MSKCC	GRCh37	X	123019601	123019602	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0057242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			453	212	510	0	ENST00000355640.3:c.94dup	p.Thr32AsnfsTer4	p.T32Nfs*4	ENST00000355640		30	tta/ttAa																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845397	42845397	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762854045		P-0057245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	71	811	4	ENST00000398585.3:c.865C>T	p.Arg289Cys	p.R289C	ENST00000398585	NM_001135099.1	289	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0057245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			698	119	536	0	ENST00000269305.4:c.673-1G>C		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
JAK3	3718	MSKCC	GRCh37	19	17951109	17951109	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143038064		P-0057245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			994	65	719	0	ENST00000458235.1:c.1184G>A	p.Arg395His	p.R395H	ENST00000458235	NM_000215.3	395	cGt/cAt																																																																															
ETV6	2120	MSKCC	GRCh37	12	11992224	11992224	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			729	83	488	0	ENST00000396373.4:c.314del	p.Arg105HisfsTer17	p.R105Hfs*17	ENST00000396373	NM_001987.4	105	cGa/ca																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164568	36164568	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			807	57	657	0	ENST00000300305.3:c.1307C>A	p.Ser436Tyr	p.S436Y	ENST00000300305		436	tCc/tAc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798564	32798564	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs760924428		P-0057245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			777	147	574	0	ENST00000374899.4:c.1292G>C	p.Gly431Ala	p.G431A	ENST00000374899	NM_018833.2	431	gGg/gCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0057381-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			540	38	365	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519985		P-0057381-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1203	102	931	0	ENST00000269305.4:c.857A>G	p.Glu286Gly	p.E286G	ENST00000269305	NM_001126112.2	286	gAa/gGa																																																																															
APC	324	MSKCC	GRCh37	5	112164645	112164645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057381-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			403	25	222	0	ENST00000257430.4:c.1719G>A	p.Met573Ile	p.M573I	ENST00000257430	NM_000038.5	573	atG/atA																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971113	21971113	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057381-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			877	48	636	1	ENST00000304494.5:c.245T>A	p.Val82Glu	p.V82E	ENST00000304494	NM_000077.4	82	gTg/gAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974744	21974744	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057381-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			589	37	444	0	ENST00000304494.5:c.83T>A	p.Val28Glu	p.V28E	ENST00000304494	NM_000077.4	28	gTg/gAg																																																																															
RB1	5925	MSKCC	GRCh37	13	48951166	48951166	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0057424-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	81	352	0	ENST00000267163.4:c.1328C>G	p.Ser443Ter	p.S443*	ENST00000267163	NM_000321.2	443	tCa/tGa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041896	14041896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057424-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			536	37	433	0	ENST00000311895.7:c.2443G>A	p.Glu815Lys	p.E815K	ENST00000311895	NM_005236.2	815	Gag/Aag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348450	89348450	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057424-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1251	84	1003	0	ENST00000301030.4:c.4500G>C	p.Gln1500His	p.Q1500H	ENST00000301030	NM_001256183.1	1500	caG/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912660		P-0057424-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	180	869	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244124	5244124	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057424-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1260	71	1016	0	ENST00000357368.4:c.1358C>G	p.Pro453Arg	p.P453R	ENST00000357368	NM_002850.3	453	cCc/cGc																																																																															
TET2	54790	MSKCC	GRCh37	4	106155652	106155652	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1224691808		P-0057424-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			628	43	440	1	ENST00000380013.4:c.553C>T	p.Gln185Ter	p.Q185*	ENST00000380013	NM_001127208.2	185	Cag/Tag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31410981	31410981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057424-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	107	698	0	ENST00000344624.3:c.3539C>G	p.Ser1180Cys	p.S1180C	ENST00000344624		1180	tCt/tGt																																																																															
MET	4233	MSKCC	GRCh37	7	116411887	116411907	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCTCTCTGTTTTAAGATCTG	TTCTCTCTGTTTTAAGATCTG	-			P-0057424-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1410	170	980	0	ENST00000397752.3:c.2888-16_2892del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs869320707		P-0057424-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1155	291	866	0	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
SMO	6608	MSKCC	GRCh37	7	128845172	128845172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057424-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1254	179	910	0	ENST00000249373.3:c.666C>A	p.Phe222Leu	p.F222L	ENST00000249373	NM_005631.4	222	ttC/ttA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874398	151874398	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057424-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			762	92	480	0	ENST00000262189.6:c.8140G>C	p.Asp2714His	p.D2714H	ENST00000262189	NM_170606.2	2714	Gat/Cat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040929	47040929	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057424-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1432	180	1163	3	ENST00000329236.7:c.1228del	p.Ala410ProfsTer216	p.A410Pfs*216	ENST00000329236	NM_001204466.1	409	Ggg/gg																																																																															
CDH1	999	MSKCC	GRCh37	16	68835756	68835828	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGAATACAGTGGGGCACCACCACCGCCCCCCGCCCCATCAGGTATGTTGGCATTTTTCTGAGAAGTTCGCTGT	TGAATACAGTGGGGCACCACCACCGCCCCCCGCCCCATCAGGTATGTTGGCATTTTTCTGAGAAGTTCGCTGT	-			P-0057447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	148	793	0	ENST00000261769.5:c.349_387+34del		p.X117_splice	ENST00000261769	NM_004360.3	117																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0057448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	147	493	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0057448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	127	549	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0057448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	198	548	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	147	628	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939177	36939177	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs186379741		P-0057448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	274	1177	0	ENST00000361632.4:c.532G>A	p.Val178Met	p.V178M	ENST00000361632		178	Gtg/Atg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633632	69633632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	31	21	0	ENST00000334134.2:c.70C>T	p.Arg24Trp	p.R24W	ENST00000334134	NM_005247.2	24	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0057448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	427	828	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
SOX9	6662	MSKCC	GRCh37	17	70118940	70118941	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0057448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	463	1006	0	ENST00000245479.2:c.514dup	p.Tyr172LeufsTer80	p.Y172Lfs*80	ENST00000245479	NM_000346.3	171	gat/gaTt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193091462	193091462	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587776558		P-0057448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	178	496	1	ENST00000367435.3:c.131+1G>A		p.X44_splice	ENST00000367435	NM_024529.4	44																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266027	41266253	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTA	GGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTA	-			P-0057448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	8	352	0	ENST00000349496.5:c.24_241+9del		p.X8_splice	ENST00000349496	NM_001904.3	8																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38061192	38061210	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCGCTTCTGGCGGCGCA	AAGCGCTTCTGGCGGCGCA	-			P-0057450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	168	463	0	ENST00000250448.2:c.779_797del	p.Leu260SerfsTer55	p.L260Sfs*55	ENST00000250448	NM_004496.3	260	tTGCGCCGCCAGAAGCGCTTc/tc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14014089	14014089	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1296707814		P-0057450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	217	900	0	ENST00000311895.7:c.67G>A	p.Val23Met	p.V23M	ENST00000311895	NM_005236.2	23	Gtg/Atg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719318	190719339	+	frameshift_variant	Frame_Shift_Del	DEL	AATGAGTAATGTATCATGGGAG	AATGAGTAATGTATCATGGGAG	-			P-0057450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	73	325	0	ENST00000441310.2:c.1322_1343del	p.Met441ThrfsTer12	p.M441Tfs*12	ENST00000441310	NM_000534.4	440	tcAATGAGTAATGTATCATGGGAG/tc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696388	47696403	+	protein_altering_variant	In_Frame_Del	DEL	CTCATCCAAAAGAAAA	CTCATCCAAAAGAAAA	T			P-0057450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	213	556	0	ENST00000347630.2:c.420_435delinsA	p.Asp140_Asp144del	p.D140_D144del	ENST00000347630	NM_001007230.1	140	gaTTTTCTTTTGGATGAG/gaA																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0057458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	139	422	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0057458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	241	449	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ATM	472	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0057458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	242	432	0	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519975		P-0057458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	533	1056	0	ENST00000269305.4:c.403T>C	p.Cys135Arg	p.C135R	ENST00000269305	NM_001126112.2	135	Tgc/Cgc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0057458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	129	354	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045133	47045133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	163	817	1	ENST00000329236.7:c.2140C>T	p.Arg714Trp	p.R714W	ENST00000329236	NM_001204466.1	714	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0057458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	154	319	0	ENST00000257430.4:c.4063dup	p.Ser1355PhefsTer20	p.S1355Ffs*20	ENST00000257430	NM_000038.5	1353	-/T																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259416	89259416	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	157	694	0	ENST00000336596.2:c.560G>T	p.Gly187Val	p.G187V	ENST00000336596	NM_005233.5	187	gGt/gTt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473592	67473593	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0057458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	582	868	0	ENST00000327367.4:c.673dup	p.Thr225AsnfsTer86	p.T225Nfs*86	ENST00000327367	NM_005902.3	224	-/A																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368268	45368268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	326	564	1	ENST00000262160.6:c.1334C>T	p.Pro445Leu	p.P445L	ENST00000262160	NM_005901.5	445	cCt/cTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860581	151860581	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	58	745	0	ENST00000262189.6:c.10081A>C	p.Lys3361Gln	p.K3361Q	ENST00000262189	NM_170606.2	3361	Aaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs863224499		P-0057459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	151	859	0	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71945405	71945405	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	139	882	1	ENST00000298229.2:c.2293T>A	p.Phe765Ile	p.F765I	ENST00000298229	NM_001567.3	765	Ttc/Atc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380276	+	missense_variant	Missense_Mutation	DNP	TT	TT	AC			P-0057459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	100	652	2	ENST00000256078.4:c.182_183delinsGT	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAA/cGT																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060786	38060803	+	inframe_deletion	In_Frame_Del	DEL	GGAGAACGGGTGGTTGAA	GGAGAACGGGTGGTTGAA	-			P-0057459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	293	1047	0	ENST00000250448.2:c.1186_1203del	p.Phe396_Ser401del	p.F396_S401del	ENST00000250448	NM_004496.3	396	TTCAACCACCCGTTCTCC/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	161	410	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	233	540	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	169	351	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	222	483	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	195	412	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165213	47165213	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	142	314	1	ENST00000409792.3:c.913del	p.Thr305GlnfsTer35	p.T305Qfs*35	ENST00000409792	NM_014159.6	305	Aca/ca																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1385	118	812	8	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574026	7574026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	152	685	0	ENST00000269305.4:c.1001G>T	p.Gly334Val	p.G334V	ENST00000269305	NM_001126112.2	334	gGg/gTg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1341	143	1003	1	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937354	32937355	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	160	336	0	ENST00000380152.3:c.8021dup	p.Ile2675AspfsTer6	p.I2675Dfs*6	ENST00000380152		2672	ata/atAa																																																																															
APC	324	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398123121		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	124	312	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	247	420	10	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715979	52715979	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786205227		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	354	727	0	ENST00000322088.6:c.544C>T	p.Arg182Trp	p.R182W	ENST00000322088	NM_014225.5	182	Cgg/Tgg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139794922	139794922	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs551577118		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	299	667	0	ENST00000247668.2:c.316G>A	p.Val106Ile	p.V106I	ENST00000247668	NM_021138.3	106	Gtc/Atc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	137	532	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	159	736	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089705	27089706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1286891446		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	290	779	0	ENST00000324856.7:c.2666dup	p.Met890HisfsTer46	p.M890Hfs*46	ENST00000324856	NM_006015.4	887	-/G																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911072	29911072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1393	454	1367	1	ENST00000376809.5:c.371G>A	p.Gly124Asp	p.G124D	ENST00000376809	NM_002116.7	124	gGc/gAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37884218	37884218	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1157	166	777	0	ENST00000269571.5:c.3694del	p.Ala1232LeufsTer70	p.A1232Lfs*70	ENST00000269571		1230	cGg/cg																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	148	616	1	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	203	465	5	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	22	53	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
APC	324	MSKCC	GRCh37	5	112178033	112178033	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs773874693		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	185	427	0	ENST00000257430.4:c.6747del	p.Gly2250AlafsTer29	p.G2250Afs*29	ENST00000257430	NM_000038.5	2248	Aaa/aa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435312	56435312	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139405076		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	399	853	1	ENST00000407977.2:c.1825C>T	p.Arg609Trp	p.R609W	ENST00000407977		609	Cgg/Tgg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117622211	117622211	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs760646608		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	212	349	0	ENST00000368508.3:c.6659A>T	p.Asn2220Ile	p.N2220I	ENST00000368508	NM_002944.2	2220	aAt/aTt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53224141	53224141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	380	811	2	ENST00000375401.3:c.3410C>T	p.Ala1137Val	p.A1137V	ENST00000375401	NM_004187.3	1137	gCg/gTg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459858	149459858	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs566891025		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	364	932	2	ENST00000286301.3:c.349G>A	p.Val117Met	p.V117M	ENST00000286301	NM_005211.3	117	Gtg/Atg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	500	570	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ATRX	546	MSKCC	GRCh37	X	76855024	76855024	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	237	480	0	ENST00000373344.5:c.5812A>G	p.Lys1938Glu	p.K1938E	ENST00000373344	NM_000489.3	1938	Aaa/Gaa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16021243	16021243	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	153	295	1	ENST00000268712.3:c.2014C>T	p.Arg672Ter	p.R672*	ENST00000268712	NM_006311.3	672	Cga/Tga																																																																															
CUL3	8452	MSKCC	GRCh37	2	225368388	225368388	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1366667901		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	169	361	0	ENST00000264414.4:c.1358del	p.Asn453ThrfsTer2	p.N453Tfs*2	ENST00000264414	NM_003590.4	453	aAc/ac																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521848	157521848	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747088591		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	224	539	1	ENST00000346085.5:c.4120C>T	p.Arg1374Cys	p.R1374C	ENST00000346085	NM_020732.3	1374	Cgc/Tgc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508563	106508563	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757016725		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	81	480	0	ENST00000359195.3:c.557C>T	p.Ala186Val	p.A186V	ENST00000359195	NM_002649.2	186	gCg/gTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534484	187534484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748020206		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	197	351	1	ENST00000441802.2:c.9242C>T	p.Thr3081Met	p.T3081M	ENST00000441802	NM_005245.3	3081	aCg/aTg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495715	56495715	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	241	505	1	ENST00000267101.3:c.3910del	p.His1304MetfsTer7	p.H1304Mfs*7	ENST00000267101	NM_001982.3	1302	gCc/gc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678547	88678547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	98	525	1	ENST00000360948.2:c.989del	p.Pro330HisfsTer84	p.P330Hfs*84	ENST00000360948	NM_001012338.2	330	cCa/ca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433689	49433689	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760968358		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1230	471	1074	0	ENST00000301067.7:c.7864G>A	p.Asp2622Asn	p.D2622N	ENST00000301067	NM_003482.3	2622	Gac/Aac																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64128676	64128676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	364	775	1	ENST00000334205.4:c.533C>T	p.Thr178Met	p.T178M	ENST00000334205	NM_003942.2	178	aCg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434958	49434959	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	279	827	0	ENST00000301067.7:c.6594dup	p.Tyr2199LeufsTer3	p.Y2199Lfs*3	ENST00000301067	NM_003482.3	2198	-/C																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31468119	31468119	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767966111		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	241	580	0	ENST00000344624.3:c.2293G>A	p.Asp765Asn	p.D765N	ENST00000344624		765	Gat/Aat																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270595	98270595	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1217844666		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	17	44	0	ENST00000331920.6:c.49G>A	p.Gly17Ser	p.G17S	ENST00000331920	NM_000264.3	17	Ggc/Agc																																																																															
NF1	4763	MSKCC	GRCh37	17	29586144	29586144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	121	446	1	ENST00000358273.4:c.4427G>A	p.Arg1476His	p.R1476H	ENST00000358273	NM_001042492.2	1476	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106074	27106074	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	126	547	0	ENST00000324856.7:c.5688del	p.Pro1898HisfsTer25	p.P1898Hfs*25	ENST00000324856	NM_006015.4	1895	gaG/ga																																																																															
MSH2	4436	MSKCC	GRCh37	2	47639649	47639649	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	239	448	0	ENST00000233146.2:c.746del	p.Lys249ArgfsTer5	p.K249Rfs*5	ENST00000233146	NM_000251.2	248	Aaa/aa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302992	15302992	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755685473		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1175	404	1027	1	ENST00000263388.2:c.458G>A	p.Arg153His	p.R153H	ENST00000263388	NM_000435.2	153	cGc/cAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136258	2136258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45437192		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	388	884	1	ENST00000219476.3:c.4727C>T	p.Thr1576Met	p.T1576M	ENST00000219476	NM_000548.3	1576	aCg/aTg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39278406	39278406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775052125		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	222	478	0	ENST00000402219.2:c.743G>A	p.Arg248His	p.R248H	ENST00000402219	NM_005633.3	248	cGc/cAc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639789	3639789	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373107728		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	392	988	1	ENST00000294008.3:c.3850G>A	p.Val1284Met	p.V1284M	ENST00000294008	NM_032444.2	1284	Gtg/Atg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324542	31324543	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1347	310	1072	0	ENST00000412585.2:c.265_266del	p.Gln89AspfsTer9	p.Q89Dfs*9	ENST00000412585	NM_005514.6	89	CAg/g																																																																															
MST1R	4486	MSKCC	GRCh37	3	49932797	49932797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	347	766	0	ENST00000296474.3:c.3074C>T	p.Ala1025Val	p.A1025V	ENST00000296474	NM_002447.2	1025	gCc/gTc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138583	2138583	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778484981		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	354	828	1	ENST00000219476.3:c.5396C>T	p.Ser1799Leu	p.S1799L	ENST00000219476	NM_000548.3	1799	tCg/tTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112461	115112461	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777764537		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	302	740	2	ENST00000257566.3:c.1279C>T	p.Arg427Trp	p.R427W	ENST00000257566	NM_016569.3	427	Cgg/Tgg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112272	115112272	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs544562535		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	107	126	0	ENST00000257566.3:c.1468G>A	p.Ala490Thr	p.A490T	ENST00000257566	NM_016569.3	490	Gcc/Acc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936678	49936678	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1160	132	698	1	ENST00000296474.3:c.1249A>G	p.Ser417Gly	p.S417G	ENST00000296474	NM_002447.2	417	Agc/Ggc																																																																															
ATR	545	MSKCC	GRCh37	3	142180907	142180907	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751772547		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	72	306	0	ENST00000350721.4:c.7067G>A	p.Arg2356His	p.R2356H	ENST00000350721	NM_001184.3	2356	cGt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517952	187517952	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	178	539	0	ENST00000441802.2:c.12742del	p.Gln4248ArgfsTer101	p.Q4248Rfs*101	ENST00000441802	NM_005245.3	4248	Cag/ag																																																																															
MED12	9968	MSKCC	GRCh37	X	70360684	70360684	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	60	230	0	ENST00000374080.3:c.6244C>T	p.Gln2082Ter	p.Q2082*	ENST00000374080		2082	Cag/Tag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65305309	65305309	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	136	578	0	ENST00000342505.4:c.2819A>G	p.Tyr940Cys	p.Y940C	ENST00000342505	NM_002227.2	940	tAc/tGc																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699538	117699538	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	154	314	0	ENST00000369458.3:c.103C>G	p.His35Asp	p.H35D	ENST00000369458	NM_024626.3	35	Cac/Gac																																																																															
PARP1	142	MSKCC	GRCh37	1	226566922	226566922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	62	636	0	ENST00000366794.5:c.1666A>G	p.Thr556Ala	p.T556A	ENST00000366794	NM_001618.3	556	Acc/Gcc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911540	114911540	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	189	350	0	ENST00000543371.1:c.1058C>A	p.Pro353His	p.P353H	ENST00000543371	NM_001198531.1	353	cCt/cAt																																																																															
PGR	5241	MSKCC	GRCh37	11	100962548	100962548	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	121	501	0	ENST00000325455.5:c.1849A>C	p.Lys617Gln	p.K617Q	ENST00000325455	NM_001202474.3	617	Aaa/Caa																																																																															
PGR	5241	MSKCC	GRCh37	11	100999065	100999065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	125	775	0	ENST00000325455.5:c.737G>T	p.Gly246Val	p.G246V	ENST00000325455	NM_001202474.3	246	gGc/gTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118377063	118377063	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	104	446	0	ENST00000534358.1:c.10456T>C	p.Phe3486Leu	p.F3486L	ENST00000534358	NM_005933.3	3486	Ttt/Ctt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28903856	28903856	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1490896111		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	227	612	0	ENST00000282397.4:c.2603C>T	p.Thr868Met	p.T868M	ENST00000282397	NM_002019.4	868	aCg/aTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95571517	95571517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	128	489	1	ENST00000343455.3:c.3160C>T	p.Leu1054Phe	p.L1054F	ENST00000343455	NM_177438.2	1054	Ctc/Ttc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457258	67457258	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1251	197	873	0	ENST00000327367.4:c.232T>C	p.Ser78Pro	p.S78P	ENST00000327367	NM_005902.3	78	Tcc/Ccc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90633737	90633737	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	328	669	0	ENST00000330062.3:c.347T>C	p.Ile116Thr	p.I116T	ENST00000330062	NM_002168.2	116	aTc/aCc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640455	3640455	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs569194362		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	448	1031	1	ENST00000294008.3:c.3184C>T	p.Arg1062Cys	p.R1062C	ENST00000294008	NM_032444.2	1062	Cgt/Tgt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67646016	67646016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	209	473	0	ENST00000264010.4:c.944C>T	p.Thr315Ile	p.T315I	ENST00000264010	NM_006565.3	315	aCa/aTa																																																																															
CDH1	999	MSKCC	GRCh37	16	68771347	68771348	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs1312011708		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	139	353	0	ENST00000261769.5:c.44_46dup	p.Leu15dup	p.L15dup	ENST00000261769	NM_004360.3	15	gcg/gcGCTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579365	7579365	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782461		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1086	379	867	0	ENST00000269305.4:c.322G>T	p.Gly108Cys	p.G108C	ENST00000269305	NM_001126112.2	108	Ggt/Tgt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912775	50912775	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	385	932	0	ENST00000440232.2:c.2007-1G>T		p.X669_splice	ENST00000440232	NM_002691.3	669																																																																																
DNMT3A	1788	MSKCC	GRCh37	2	25471036	25471036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1215	198	877	0	ENST00000264709.3:c.725C>T	p.Ala242Val	p.A242V	ENST00000264709	NM_175629.2	242	gCc/gTc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033674	48033675	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	222	244	0	ENST00000234420.5:c.3889dup	p.Ser1297LysfsTer5	p.S1297Kfs*5	ENST00000234420	NM_000179.2	1295	-/A																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99154343	99154343	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762110602		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	241	535	0	ENST00000074304.5:c.485G>A	p.Arg162His	p.R162H	ENST00000074304	NM_001134224.1	162	cGt/cAt																																																																															
ACVR1	90	MSKCC	GRCh37	2	158634653	158634653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	158	386	0	ENST00000263640.3:c.533G>A	p.Ser178Asn	p.S178N	ENST00000263640	NM_001105.4	178	aGc/aAc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225378243	225378244	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	127	272	0	ENST00000264414.4:c.651dup	p.Gln218SerfsTer12	p.Q218Sfs*12	ENST00000264414	NM_003590.4	217	-/T																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30309859	30309859	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	345	666	0	ENST00000307677.4:c.163C>A	p.Pro55Thr	p.P55T	ENST00000307677	NM_138578.1	55	Cca/Aca																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42851136	42851136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	194	411	0	ENST00000398585.3:c.757G>A	p.Ala253Thr	p.A253T	ENST00000398585	NM_001135099.1	253	Gcc/Acc																																																																															
EP300	2033	MSKCC	GRCh37	22	41513302	41513302	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370355846		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	244	522	1	ENST00000263253.7:c.206G>A	p.Gly69Asp	p.G69D	ENST00000263253	NM_001429.3	69	gGc/gAc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390956	89390956	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	169	429	0	ENST00000336596.2:c.1022T>C	p.Val341Ala	p.V341A	ENST00000336596	NM_005233.5	341	gTt/gCt																																																																															
MSH3	4437	MSKCC	GRCh37	5	80057491	80057492	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	111	263	0	ENST00000265081.6:c.1896dup	p.Cys633MetfsTer28	p.C633Mfs*28	ENST00000265081	NM_002439.4	630	-/A																																																																															
RAD50	10111	MSKCC	GRCh37	5	131953890	131953890	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs864622571		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	204	336	0	ENST00000265335.6:c.3293G>A	p.Arg1098Gln	p.R1098Q	ENST00000265335		1098	cGg/cAg																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839896	27839907	+	inframe_deletion	In_Frame_Del	DEL	TAGCTTCCGGAT	TAGCTTCCGGAT	-			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1136	136	796	0	ENST00000328488.2:c.187_198del	p.Ile63_Leu66del	p.I63_L66del	ENST00000328488	NM_003533.2	63	ATCCGGAAGCTA/-																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324601	31324604	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-	rs766427608		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	426	987	0	ENST00000412585.2:c.204_207del	p.Glu69SerfsTer7	p.E69Sfs*7	ENST00000412585	NM_005514.6	68	agAGAG/ag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151849832	151849832	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201883770		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	164	395	0	ENST00000262189.6:c.12484C>T	p.Arg4162Trp	p.R4162W	ENST00000262189	NM_170606.2	4162	Cgg/Tgg																																																																															
TEK	7010	MSKCC	GRCh37	9	27168568	27168568	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	120	489	0	ENST00000380036.4:c.440T>C	p.Leu147Ser	p.L147S	ENST00000380036	NM_000459.3	147	tTg/tCg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128230293	128230293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772438885		P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	336	651	0	ENST00000265960.3:c.1303G>A	p.Asp435Asn	p.D435N	ENST00000265960	NM_001006617.1	435	Gac/Aac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391220	139391220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1442	241	1095	0	ENST00000277541.6:c.6971A>G	p.Asn2324Ser	p.N2324S	ENST00000277541	NM_017617.3	2324	aAc/aGc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15840950	15840950	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	103	453	0	ENST00000307771.7:c.1034A>T	p.Asp345Val	p.D345V	ENST00000307771	NM_005089.3	345	gAc/gTc																																																																															
ATRX	546	MSKCC	GRCh37	X	76764094	76764094	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	112	441	0	ENST00000373344.5:c.7214T>C	p.Val2405Ala	p.V2405A	ENST00000373344	NM_000489.3	2405	gTt/gCt																																																																															
RHOA	387	MSKCC	GRCh37	3	49412905	49412905	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519951		P-0057465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	91	521	0	ENST00000418115.1:c.118G>C	p.Glu40Gln	p.E40Q	ENST00000418115	NM_001664.2	40	Gag/Cag																																																																															
CDH1	999	MSKCC	GRCh37	16	68856113	68856113	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782750		P-0057465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	79	354	0	ENST00000261769.5:c.1921C>T	p.Gln641Ter	p.Q641*	ENST00000261769	NM_004360.3	641	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692811	89692811	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	45	211	0	ENST00000371953.3:c.295G>T	p.Glu99Ter	p.E99*	ENST00000371953	NM_000314.4	99	Gaa/Taa																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217617	7217617	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	88	361	0	ENST00000380728.2:c.310G>T	p.Glu104Ter	p.E104*	ENST00000380728		104	Gaa/Taa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178257	56178258	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0057465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	43	216	0	ENST00000399503.3:c.3236dup	p.Asn1079LysfsTer2	p.N1079Kfs*2	ENST00000399503	NM_005921.1	1077	tca/tcAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106792	27106793	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0057465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	123	545	0	ENST00000324856.7:c.6405dup	p.Leu2136SerfsTer14	p.L2136Sfs*14	ENST00000324856	NM_006015.4	2135	att/aTtt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225370799	225370799	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	67	265	0	ENST00000264414.4:c.1080C>G	p.Phe360Leu	p.F360L	ENST00000264414	NM_003590.4	360	ttC/ttG																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123239462	123239462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	132	598	0	ENST00000358487.5:c.2375C>T	p.Ser792Leu	p.S792L	ENST00000358487	NM_000141.4	792	tCa/tTa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112535	115112536	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0057465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	395	995	0	ENST00000257566.3:c.1204dup	p.Glu402GlyfsTer5	p.E402Gfs*5	ENST00000257566	NM_016569.3	402	gag/gGag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43714173	43714173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1159	211	810	0	ENST00000382044.4:c.3980C>T	p.Ser1327Leu	p.S1327L	ENST00000382044	NM_001141980.1	1327	tCa/tTa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098336	47098336	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0057465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	65	291	0	ENST00000409792.3:c.6938C>G	p.Ser2313Ter	p.S2313*	ENST00000409792	NM_014159.6	2313	tCa/tGa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160643	56160656	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGTGTTAACAAA	GCCGTGTTAACAAA	-			P-0057465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	46	259	0	ENST00000399503.3:c.918_931del	p.Arg307AspfsTer14	p.R307Dfs*14	ENST00000399503	NM_005921.1	306	cGCCGTGTTAACAAA/c																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873763	151873763	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	106	360	0	ENST00000262189.6:c.8775G>C	p.Glu2925Asp	p.E2925D	ENST00000262189	NM_170606.2	2925	gaG/gaC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873912	151873912	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	85	329	0	ENST00000262189.6:c.8626G>C	p.Asp2876His	p.D2876H	ENST00000262189	NM_170606.2	2876	Gat/Cat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891097	151891097	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	106	282	0	ENST00000262189.6:c.4657C>T	p.Gln1553Ter	p.Q1553*	ENST00000262189	NM_170606.2	1553	Cag/Tag																																																																															
AGO2	27161	MSKCC	GRCh37	8	141570511	141570512	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0057465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	125	559	0	ENST00000220592.5:c.616_617del	p.Val206ProfsTer12	p.V206Pfs*12	ENST00000220592	NM_012154.3	206	GTc/c																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98221897	98221897	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	69	355	0	ENST00000331920.6:c.2872G>C	p.Glu958Gln	p.E958Q	ENST00000331920	NM_000264.3	958	Gaa/Caa																																																																															
HRAS	3265	MSKCC	GRCh37	11	534288	534288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894230		P-0057527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	300	604	0	ENST00000311189.7:c.35G>A	p.Gly12Asp	p.G12D	ENST00000311189		12	gGc/gAc																																																																															
RB1	5925	MSKCC	GRCh37	13	49039340	49039340	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0057527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	573	500	0	ENST00000267163.4:c.2326-1G>A		p.X776_splice	ENST00000267163	NM_000321.2	776																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66356427	66356427	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	118	297	0	ENST00000273854.3:c.1070C>A	p.Pro357His	p.P357H	ENST00000273854	NM_004439.5	357	cCc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419852	41419852	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	469	488	0	ENST00000373198.4:c.469T>C	p.Trp157Arg	p.W157R	ENST00000373198	NM_133170.3	157	Tgg/Cgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576873	7576874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0057527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	678	640	0	ENST00000269305.4:c.972dup	p.Gly325TrpfsTer12	p.G325Wfs*12	ENST00000269305	NM_001126112.2	324	-/T																																																																															
SPEN	23013	MSKCC	GRCh37	1	16245993	16245993	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	386	338	0	ENST00000375759.3:c.1616G>C	p.Arg539Pro	p.R539P	ENST00000375759	NM_015001.2	539	cGa/cCa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16174624	16174624	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	455	386	0	ENST00000375759.3:c.62A>G	p.Lys21Arg	p.K21R	ENST00000375759	NM_015001.2	21	aAg/aGg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112915534	112915534	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0057527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	238	486	0	ENST00000351677.2:c.933+1del		p.M311fs	ENST00000351677	NM_002834.3	311	atG/at																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599983	10599984	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0057527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	731	784	0	ENST00000171111.5:c.1592_1593delinsCT	p.Leu531Pro	p.L531P	ENST00000171111	NM_203500.1	531	cTG/cCT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214068	36214068	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			4299	1088	972	1	ENST00000222270.7:c.2894G>T	p.Arg965Leu	p.R965L	ENST00000222270	NM_014727.1	965	cGa/cTa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99185132	99185132	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs1392030374		P-0057527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	334	312	0	ENST00000074304.5:c.2533+1G>T		p.X845_splice	ENST00000074304	NM_001134224.1	845																																																																																
SF3B1	23451	MSKCC	GRCh37	2	198263210	198263210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	166	336	0	ENST00000335508.6:c.3109G>T	p.Asp1037Tyr	p.D1037Y	ENST00000335508	NM_012433.2	1037	Gat/Tat																																																																															
EP300	2033	MSKCC	GRCh37	22	41564823	41564823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	328	620	0	ENST00000263253.7:c.4124G>A	p.Gly1375Asp	p.G1375D	ENST00000263253	NM_001429.3	1375	gGc/gAc																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434213	12434213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	349	366	0	ENST00000287820.6:c.581G>T	p.Arg194Leu	p.R194L	ENST00000287820	NM_015869.4	194	cGg/cTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106155566	106155566	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	161	296	0	ENST00000380013.4:c.467A>T	p.Gln156Leu	p.Q156L	ENST00000380013	NM_001127208.2	156	cAa/cTa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508457	106508457	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	259	264	0	ENST00000359195.3:c.451C>T	p.Gln151Ter	p.Q151*	ENST00000359195	NM_002649.2	151	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151833988	151833988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	206	396	0	ENST00000262189.6:c.14665G>A	p.Asp4889Asn	p.D4889N	ENST00000262189	NM_170606.2	4889	Gac/Aac																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38188974	38188974	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1302	310	624	0	ENST00000317025.8:c.1040C>A	p.Ala347Asp	p.A347D	ENST00000317025	NM_023034.1	347	gCc/gAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69129872	69129872	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	391	288	0	ENST00000288368.4:c.4627del	p.Glu1543SerfsTer23	p.E1543Sfs*23	ENST00000288368	NM_024870.2	1542	ctG/ct																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410042	139410042	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	481	1027	1	ENST00000277541.6:c.1796A>T	p.His599Leu	p.H599L	ENST00000277541	NM_017617.3	599	cAc/cTc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44820528	44820528	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0057527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	314	144	0	ENST00000377967.4:c.226-1G>T		p.X76_splice	ENST00000377967	NM_021140.2	76																																																																																
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0057530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	181	670	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0057547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	319	880	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0057547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	77	381	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175322	112175322	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	48	237	0	ENST00000257430.4:c.4031C>A	p.Ser1344Ter	p.S1344*	ENST00000257430	NM_000038.5	1344	tCa/tAa																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429753	78429753	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	14	245	0	ENST00000370768.2:c.1035T>G	p.Ser345Arg	p.S345R	ENST00000370768	NM_003902.3	345	agT/agG																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245451	153245451	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	245	585	0	ENST00000281708.4:c.1740C>A	p.His580Gln	p.H580Q	ENST00000281708	NM_033632.3	580	caC/caA																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170171	32170171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	242	1176	2	ENST00000375023.3:c.3437G>A	p.Cys1146Tyr	p.C1146Y	ENST00000375023	NM_004557.3	1146	tGc/tAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140481417	140481417	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913348		P-0057551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	70	393	0	ENST00000288602.6:c.1391G>T	p.Gly464Val	p.G464V	ENST00000288602	NM_004333.4	464	gGa/gTa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0057551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	62	298	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981483	70981483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	109	1306	0	ENST00000276594.2:c.613G>A	p.Val205Ile	p.V205I	ENST00000276594	NM_024504.3	205	Gtt/Att																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861139	57861139	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	62	631	0	ENST00000228682.2:c.936C>A	p.Tyr312Ter	p.Y312*	ENST00000228682	NM_005269.2	312	taC/taA																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986485	36986485	+	stop_lost	Nonstop_Mutation	SNP	A	A	T			P-0057551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	187	934	0	ENST00000354822.5:c.1204T>A	p.Ter402ArgextTer63	p.*402Rext*63	ENST00000354822	NM_001079668.2	402	Tga/Aga																																																																															
HGF	3082	MSKCC	GRCh37	7	81339474	81339474	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	23	349	0	ENST00000222390.5:c.1530T>A	p.Ser510Arg	p.S510R	ENST00000222390	NM_000601.4	510	agT/agA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	-	rs121913425		P-0057552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	50	395	0	ENST00000275493.2:c.2237_2251del	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gca																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518171	103518171	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	41	249	0	ENST00000355739.4:c.2109C>G	p.Asp703Glu	p.D703E	ENST00000355739	NM_000123.3	703	gaC/gaG																																																																															
JUN	3725	MSKCC	GRCh37	1	59247812	59247813	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0057554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	179	871	1	ENST00000371222.2:c.930_931del	p.Lys311SerfsTer6	p.K311Sfs*6	ENST00000371222	NM_002228.3	310	caGAaa/caaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0057554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	39	355	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578382	7578388	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCAGC	GAGCAGC	-			P-0057554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	141	827	0	ENST00000269305.4:c.542_548del	p.Arg181GlnfsTer64	p.R181Qfs*64	ENST00000269305	NM_001126112.2	181	cGCTGCTCa/ca																																																																															
APC	324	MSKCC	GRCh37	5	112175706	112175706	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0057554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	38	262	0	ENST00000257430.4:c.4415del	p.Val1472GlufsTer35	p.V1472Efs*35	ENST00000257430	NM_000038.5	1472	gTa/ga																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956723	68956723	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs750933833		P-0057554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	67	470	0	ENST00000288368.4:c.841C>T	p.Arg281Trp	p.R281W	ENST00000288368	NM_024870.2	281	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0057555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	424	910	0	ENST00000269305.4:c.321C>G	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taG																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437185	52437185	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0057555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	357	717	0	ENST00000460680.1:c.1859del	p.Glu620GlyfsTer3	p.E620Gfs*3	ENST00000460680	NM_004656.3	620	gAg/gg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11186739	11186739	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	85	616	0	ENST00000361445.4:c.6466A>G	p.Ile2156Val	p.I2156V	ENST00000361445	NM_004958.3	2156	Ata/Gta																																																																															
TET1	80312	MSKCC	GRCh37	10	70360793	70360793	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0057557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	37	229	0	ENST00000373644.4:c.1968+2T>G		p.X656_splice	ENST00000373644	NM_030625.2	656																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0057557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	66	375	1	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46211499	46211501	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0057557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	49	248	0	ENST00000334344.6:c.465_467del	p.Asn156del	p.N156del	ENST00000334344	NM_152641.2	155	ccAAAt/cct																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349278	11349278	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	103	595	0	ENST00000332029.2:c.58del	p.Arg20AspfsTer65	p.R20Dfs*65	ENST00000332029	NM_003745.1	20	Cga/ga																																																																															
PALB2	79728	MSKCC	GRCh37	16	23640540	23640541	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0057557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	79	519	0	ENST00000261584.4:c.2570_2571delinsCT	p.Leu857Ser	p.L857S	ENST00000261584	NM_024675.3	857	tTG/tCT																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740509	58740509	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	100	601	0	ENST00000305921.3:c.1414G>T	p.Glu472Ter	p.E472*	ENST00000305921	NM_003620.3	472	Gaa/Taa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220502	1220502	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T	rs121913317		P-0057557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	123	1148	1	ENST00000326873.7:c.595G>T	p.Glu199Ter	p.E199*	ENST00000326873	NM_000455.4	199	Gag/Tag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2207627	2207627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	179	1164	1	ENST00000398665.3:c.911C>T	p.Ser304Leu	p.S304L	ENST00000398665	NM_032482.2	304	tCg/tTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211135	36211135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1228	202	1407	0	ENST00000222270.7:c.886G>T	p.Gly296Cys	p.G296C	ENST00000222270	NM_014727.1	296	Ggc/Tgc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171751	36171751	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	45	375	0	ENST00000300305.3:c.814C>T	p.Gln272Ter	p.Q272*	ENST00000300305		272	Cag/Tag																																																																															
KDR	3791	MSKCC	GRCh37	4	55971089	55971090	+	missense_variant	Missense_Mutation	DNP	AC	AC	TA			P-0057557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	91	591	0	ENST00000263923.4:c.1707_1708delinsTA	p.Leu569_Trp570delinsPheArg	p.L569_W570delinsFR	ENST00000263923	NM_002253.2	569	ttGTgg/ttTAgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524086	187524086	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	122	641	0	ENST00000441802.2:c.11453G>T	p.Cys3818Phe	p.C3818F	ENST00000441802	NM_005245.3	3818	tGt/tTt																																																																															
RAD21	5885	MSKCC	GRCh37	8	117878962	117878962	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	102	336	0	ENST00000297338.2:c.7T>G	p.Tyr3Asp	p.Y3D	ENST00000297338	NM_006265.2	3	Tac/Gac																																																																															
MED12	9968	MSKCC	GRCh37	X	70349257	70349258	+	missense_variant	Missense_Mutation	DNP	TC	TC	GT			P-0057559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	41	430	1	ENST00000374080.3:c.3669_3670delinsGT	p.Leu1224Phe	p.L1224F	ENST00000374080		1223	gtTCtc/gtGTtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0057598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	235	426	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs876659675		P-0057598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	205	859	0	ENST00000269305.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTc/aCc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479795	67479795	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs757106110		P-0057598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	48	751	0	ENST00000327367.4:c.1102C>T	p.Arg368Ter	p.R368*	ENST00000327367	NM_005902.3	368	Cga/Tga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166815	32166815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	75	1203	3	ENST00000375023.3:c.4423C>T	p.Arg1475Cys	p.R1475C	ENST00000375023	NM_004557.3	1475	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101062	27101074	+	frameshift_variant	Frame_Shift_Del	DEL	AGGCGGCCCCCAG	AGGCGGCCCCCAG	-			P-0057598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	205	829	0	ENST00000324856.7:c.4345_4357del	p.Gly1449ThrfsTer28	p.G1449Tfs*28	ENST00000324856	NM_006015.4	1448	gcAGGCGGCCCCCAG/gc																																																																															
CASP8	841	MSKCC	GRCh37	2	202139627	202139627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	121	357	0	ENST00000358485.4:c.788G>A	p.Gly263Glu	p.G263E	ENST00000358485	NM_001080125.1	263	gGg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	46	268	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	64	334	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	42	374	4	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	176	934	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	50	218	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	60	1066	0	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																															
B2M	567	MSKCC	GRCh37	15	45003747	45003747	+	start_lost	Translation_Start_Site	SNP	G	G	A	rs1057519877		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	126	611	0	ENST00000558401.1:c.3G>A	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	atG/atA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	85	385	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821596	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs767179754		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	14	127	0	ENST00000268489.5:c.10579_10581del	p.Gly3527del	p.G3527del	ENST00000268489	NM_006885.3	3527	GGC/-																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27102188	27102188	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs61756316		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	109	409	0	ENST00000324856.7:c.5114A>G	p.Asn1705Ser	p.N1705S	ENST00000324856	NM_006015.4	1705	aAc/aGc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	127	508	8	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	136	752	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030692	48030692	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	90	394	2	ENST00000234420.5:c.3312del	p.Phe1104LeufsTer11	p.F1104Lfs*11	ENST00000234420	NM_000179.2	1102	acT/ac																																																																															
ATM	472	MSKCC	GRCh37	11	108205756	108205756	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs531980488		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	80	371	1	ENST00000278616.4:c.8071C>T	p.Arg2691Cys	p.R2691C	ENST00000278616	NM_000051.3	2691	Cgc/Tgc																																																																															
RARA	5914	MSKCC	GRCh37	17	38511667	38511667	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773956341		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	116	662	3	ENST00000254066.5:c.1165G>A	p.Ala389Thr	p.A389T	ENST00000254066	NM_000964.3	389	Gcc/Acc																																																																															
MYC	4609	MSKCC	GRCh37	8	128751037	128751037	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	107	635	0	ENST00000377970.2:c.574T>C	p.Tyr192His	p.Y192H	ENST00000377970	NM_002467.4	192	Tac/Cac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437606	56437606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886926322		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	100	532	1	ENST00000407977.2:c.856C>T	p.Arg286Trp	p.R286W	ENST00000407977		286	Cgg/Tgg																																																																															
MGA	23269	MSKCC	GRCh37	15	42052632	42052632	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779811318		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	29	460	0	ENST00000219905.7:c.7303C>T	p.Arg2435Trp	p.R2435W	ENST00000219905	NM_001164273.1	2435	Cgg/Tgg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225365195	225365195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	88	267	0	ENST00000264414.4:c.1495G>A	p.Gly499Ser	p.G499S	ENST00000264414	NM_003590.4	499	Ggt/Agt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836623	89836623	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137913973		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	212	1039	2	ENST00000389301.3:c.2267G>A	p.Arg756His	p.R756H	ENST00000389301	NM_000135.2	756	cGt/cAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165283	47165283	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	100	367	0	ENST00000409792.3:c.843del	p.Glu282LysfsTer19	p.E282Kfs*19	ENST00000409792	NM_014159.6	281	aaA/aa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67646013	67646014	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-	rs1470210640		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	46	466	0	ENST00000264010.4:c.950_951del	p.Thr317ArgfsTer91	p.T317Rfs*91	ENST00000264010	NM_006565.3	314	aAC/a																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710652	114710652	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	108	518	0	ENST00000543371.1:c.137C>A	p.Ser46Ter	p.S46*	ENST00000543371	NM_001198531.1	46	tCg/tAg																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770090	56770090	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876659683		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	45	691	0	ENST00000337432.4:c.86C>T	p.Ser29Phe	p.S29F	ENST00000337432	NM_058216.2	29	tCt/tTt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250227	110250227	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	176	866	1	ENST00000374672.4:c.448T>C	p.Phe150Leu	p.F150L	ENST00000374672	NM_004235.4	150	Ttc/Ctc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	339	643	10	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	82	434	2	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551595	150551595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	44	741	0	ENST00000369026.2:c.412C>T	p.Pro138Ser	p.P138S	ENST00000369026	NM_021960.4	138	Ccg/Tcg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15383903	15383903	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1324868843		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	105	508	1	ENST00000263377.2:c.8C>T	p.Ala3Val	p.A3V	ENST00000263377	NM_058243.2	3	gCg/gTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660775	227660775	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	149	804	1	ENST00000305123.5:c.2680G>T	p.Gly894Trp	p.G894W	ENST00000305123	NM_005544.2	894	Ggg/Tgg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772901	135772901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748845915		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	165	723	0	ENST00000298552.3:c.2722C>T	p.Arg908Trp	p.R908W	ENST00000298552	NM_001162426.1	908	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332504	153332504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	39	446	0	ENST00000281708.4:c.452A>G	p.Asp151Gly	p.D151G	ENST00000281708	NM_033632.3	151	gAc/gGc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53225998	53225998	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	235	1288	0	ENST00000375401.3:c.2851C>T	p.Arg951Ter	p.R951*	ENST00000375401	NM_004187.3	951	Cga/Tga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522328	157522328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs542516057		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	51	879	0	ENST00000346085.5:c.4600C>T	p.Arg1534Cys	p.R1534C	ENST00000346085	NM_020732.3	1534	Cgc/Tgc																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110127	8110127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772022668		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	118	644	0	ENST00000585124.1:c.478G>A	p.Gly160Arg	p.G160R	ENST00000585124	NM_004217.3	160	Ggg/Agg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851573	134851573	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1281577436		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	102	553	0	ENST00000398015.3:c.979C>T	p.Arg327Cys	p.R327C	ENST00000398015	NM_004441.4	327	Cgc/Tgc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022395	31022395	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1162384519		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	150	429	0	ENST00000375687.4:c.1880C>T	p.Ala627Val	p.A627V	ENST00000375687	NM_015338.5	627	gCg/gTg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752812	57752812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	84	323	0	ENST00000274289.3:c.1116del	p.Phe372LeufsTer31	p.F372Lfs*31	ENST00000274289	NM_006622.3	372	ttT/tt																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589636	69589636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	20	167	0	ENST00000168712.1:c.217G>A	p.Ala73Thr	p.A73T	ENST00000168712	NM_002007.2	73	Gcc/Acc																																																																															
CBL	867	MSKCC	GRCh37	11	119155727	119155727	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	164	709	2	ENST00000264033.4:c.1484del	p.Pro495ArgfsTer120	p.P495Rfs*120	ENST00000264033	NM_005188.3	494	Ccc/cc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279543	18279543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	115	519	0	ENST00000222254.8:c.1816G>A	p.Ala606Thr	p.A606T	ENST00000222254	NM_005027.3	606	Gca/Aca																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028821	47028821	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782070362		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	171	1066	0	ENST00000329236.7:c.125G>A	p.Arg42His	p.R42H	ENST00000329236	NM_001204466.1	42	cGt/cAt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375160	31375160	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	72	1133	0	ENST00000328111.2:c.561del	p.Tyr188ThrfsTer4	p.Y188Tfs*4	ENST00000328111	NM_006892.3	186	aCc/ac																																																																															
MTOR	2475	MSKCC	GRCh37	1	11199422	11199422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	117	579	0	ENST00000361445.4:c.5069C>T	p.Pro1690Leu	p.P1690L	ENST00000361445	NM_004958.3	1690	cCa/cTa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852101	63852101	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	136	664	0	ENST00000279873.7:c.2879T>C	p.Met960Thr	p.M960T	ENST00000279873	NM_032199.2	960	aTg/aCg																																																																															
MSI1	4440	MSKCC	GRCh37	12	120796816	120796816	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1311127832		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	158	919	1	ENST00000257552.2:c.443G>A	p.Arg148Gln	p.R148Q	ENST00000257552	NM_002442.3	148	cGg/cAg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944204	81944204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	195	961	0	ENST00000359376.3:c.1813C>A	p.Leu605Ile	p.L605I	ENST00000359376	NM_002661.3	605	Ctc/Atc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836575	89836575	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	60	980	0	ENST00000389301.3:c.2315A>G	p.Gln772Arg	p.Q772R	ENST00000389301	NM_000135.2	772	cAg/cGg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110130	8110130	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs531140672		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	117	640	0	ENST00000585124.1:c.475C>T	p.Arg159Cys	p.R159C	ENST00000585124	NM_004217.3	159	Cgc/Tgc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40855799	40855799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	149	592	2	ENST00000428826.2:c.2057G>A	p.Arg686Gln	p.R686Q	ENST00000428826		686	cGa/cAa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78936335	78936335	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1198817759		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	64	940	0	ENST00000306801.3:c.3767T>C	p.Leu1256Pro	p.L1256P	ENST00000306801	NM_020761.2	1256	cTg/cCg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39623718	39623718	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1178890899		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	38	351	0	ENST00000262039.4:c.2125C>T	p.Pro709Ser	p.P709S	ENST00000262039	NM_002647.2	709	Cca/Tca																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350026	15350026	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	75	1161	0	ENST00000263377.2:c.3626A>G	p.His1209Arg	p.H1209R	ENST00000263377	NM_058243.2	1209	cAt/cGt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18277938	18277938	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	105	496	0	ENST00000222254.8:c.1560-2A>G		p.X520_splice	ENST00000222254	NM_005027.3	520																																																																																
POLD1	5424	MSKCC	GRCh37	19	50905751	50905751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	224	1215	0	ENST00000440232.2:c.799G>A	p.Glu267Lys	p.E267K	ENST00000440232	NM_002691.3	267	Gag/Aag																																																																															
NF2	4771	MSKCC	GRCh37	22	30069455	30069455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	126	787	0	ENST00000338641.4:c.1320G>T	p.Met440Ile	p.M440I	ENST00000338641	NM_000268.3	440	atG/atT																																																																															
SOX2	6657	MSKCC	GRCh37	3	181431010	181431010	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	146	999	0	ENST00000325404.1:c.862G>C	p.Ala288Pro	p.A288P	ENST00000325404	NM_003106.3	288	Gcc/Ccc																																																																															
KDR	3791	MSKCC	GRCh37	4	55953840	55953840	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	114	534	0	ENST00000263923.4:c.3596T>C	p.Val1199Ala	p.V1199A	ENST00000263923	NM_002253.2	1199	gTt/gCt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510240	187510240	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	132	506	0	ENST00000441802.2:c.13273T>C	p.Tyr4425His	p.Y4425H	ENST00000441802	NM_005245.3	4425	Tac/Cac																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564795	86564795	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	64	936	0	ENST00000274376.6:c.527C>A	p.Pro176His	p.P176H	ENST00000274376	NM_002890.2	176	cCt/cAt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149501541	149501541	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	158	787	0	ENST00000261799.4:c.2246T>C	p.Val749Ala	p.V749A	ENST00000261799	NM_002609.3	749	gTg/gCg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176722236	176722236	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	44	567	0	ENST00000439151.2:c.7867A>G	p.Ser2623Gly	p.S2623G	ENST00000439151	NM_022455.4	2623	Agt/Ggt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152415579	152415579	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs762742833		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	145	722	0	ENST00000206249.3:c.1429C>T	p.Arg477Ter	p.R477*	ENST00000206249	NM_000125.3	477	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151864398	151864398	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	106	462	0	ENST00000262189.6:c.9583C>T	p.Gln3195Ter	p.Q3195*	ENST00000262189	NM_170606.2	3195	Cag/Tag																																																																															
AGO2	27161	MSKCC	GRCh37	8	141542551	141542551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	40	789	1	ENST00000220592.5:c.2435G>T	p.Arg812Leu	p.R812L	ENST00000220592	NM_012154.3	812	cGg/cTg																																																																															
FANCC	2176	MSKCC	GRCh37	9	98011448	98011448	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	130	580	0	ENST00000289081.3:c.126G>T	p.Gln42His	p.Q42H	ENST00000289081	NM_000136.2	42	caG/caT																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933692	39933692	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1284842198		P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	120	803	0	ENST00000378444.4:c.907G>A	p.Ala303Thr	p.A303T	ENST00000378444	NM_001123385.1	303	Gcc/Acc																																																																															
AR	367	MSKCC	GRCh37	X	66766118	66766119	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0057629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	152	748	0	ENST00000374690.3:c.1130_1131insA	p.Pro378SerfsTer124	p.P378Sfs*124	ENST00000374690	NM_000044.3	377	cct/ccAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0057634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	75	925	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40476849	40476849	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0057634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	55	674	0	ENST00000264657.5:c.1480del	p.Thr494ProfsTer15	p.T494Pfs*15	ENST00000264657	NM_139276.2	494	Acc/cc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061223	38061228	+	inframe_deletion	In_Frame_Del	DEL	TCTCGA	TCTCGA	-			P-0057635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	85	592	0	ENST00000250448.2:c.761_766del	p.Phe254_Asn256delinsTyr	p.F254_N256delinsY	ENST00000250448	NM_004496.3	254	tTCGAGAac/tac																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374904	149374904	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	95	621	0	ENST00000360632.3:c.190C>T	p.Gln64Ter	p.Q64*	ENST00000360632	NM_015472.4	64	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0057654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	188	750	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	55	560	1	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561357	9561357	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	100	696	0	ENST00000353224.5:c.425C>G	p.Thr142Arg	p.T142R	ENST00000353224	NM_177990.2	142	aCg/aGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0057663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	77	333	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0057663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	170	847	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675058	40675058	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs779227895		P-0057663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	73	757	0	ENST00000249776.8:c.22C>A	p.Pro8Thr	p.P8T	ENST00000249776	NM_033286.3	8	Ccc/Acc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619161	37619161	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	209	425	0	ENST00000447079.4:c.837C>A	p.Tyr279Ter	p.Y279*	ENST00000447079	NM_015083.1	279	taC/taA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0057668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	45	270	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48922000	48922000	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0057668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	24	204	0	ENST00000267163.4:c.539+1G>A		p.X180_splice	ENST00000267163	NM_000321.2	180																																																																																
TP53	7157	MSKCC	GRCh37	17	7577112	7577112	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1131691029		P-0057668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	115	787	0	ENST00000269305.4:c.826G>C	p.Ala276Pro	p.A276P	ENST00000269305	NM_001126112.2	276	Gcc/Ccc																																																																															
MAX	4149	MSKCC	GRCh37	14	65569055	65569055	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0057668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	54	427	0	ENST00000358664.4:c.3G>A	p.Met1?	p.M1?	ENST00000358664	NM_002382.4	1	atG/atA																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778230	27778230	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	85	546	0	ENST00000369163.2:c.379C>G	p.Leu127Val	p.L127V	ENST00000369163	NM_003536.2	127	Ctc/Gtc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101932	11101932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	162	875	2	ENST00000344626.4:c.1352G>T	p.Arg451Leu	p.R451L	ENST00000344626	NM_003072.3	451	cGc/cTc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450382	50450382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	81	471	0	ENST00000331340.3:c.566C>A	p.Thr189Asn	p.T189N	ENST00000331340	NM_006060.4	189	aCt/aAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244150	153244152	+	missense_variant	Missense_Mutation	ONP	CCC	CCC	GCA			P-0057668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	111	424	0	ENST00000281708.4:c.2005_2007delinsTGC	p.Gly669Cys	p.G669C	ENST00000281708	NM_033632.3	669	GGG/TGC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0015802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			499	35	355	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0015802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			873	48	804	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
RET	5979	MSKCC	GRCh37	10	43597807	43597807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	215	912	1	ENST00000355710.3:c.355C>T	p.Leu119Phe	p.L119F	ENST00000355710	NM_020975.4	119	Ctc/Ttc																																																																															
WT1	7490	MSKCC	GRCh37	11	32413578	32413578	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121907909		P-0057414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	121	425	0	ENST00000332351.3:c.1372C>T	p.Arg458Ter	p.R458*	ENST00000332351	NM_024426.4	458	Cga/Tga																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948755	71948755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	274	1248	0	ENST00000298229.2:c.3467G>A	p.Arg1156Gln	p.R1156Q	ENST00000298229	NM_001567.3	1156	cGg/cAg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226090	2226090	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1316961587		P-0057414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1410	83	1260	2	ENST00000326181.6:c.1787C>T	p.Thr596Met	p.T596M	ENST00000326181	NM_032271.2	596	aCg/aTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89352037	89352037	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138353708		P-0057414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	247	894	2	ENST00000301030.4:c.913G>A	p.Ala305Thr	p.A305T	ENST00000301030	NM_001256183.1	305	Gca/Aca																																																																															
FANCA	2175	MSKCC	GRCh37	16	89831345	89831346	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs878853663		P-0057414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	73	748	5	ENST00000389301.3:c.2730_2731del	p.Trp911AspfsTer31	p.W911Dfs*31	ENST00000389301	NM_000135.2	910	ctCTgg/ctgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579359	7579359	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781371		P-0057414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	303	912	0	ENST00000269305.4:c.328C>T	p.Arg110Cys	p.R110C	ENST00000269305	NM_001126112.2	110	Cgt/Tgt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15950311	15950313	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0057414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	149	615	0	ENST00000268712.3:c.6631_6633del	p.Glu2211del	p.E2211del	ENST00000268712	NM_006311.3	2211	GAG/-																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612246	1612246	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	233	883	0	ENST00000344749.5:c.1773G>T	p.Gln591His	p.Q591H	ENST00000344749	NM_001136139.2	591	caG/caT																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223252	5223252	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763535247		P-0057414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	304	1217	1	ENST00000357368.4:c.2551C>T	p.Arg851Cys	p.R851C	ENST00000357368	NM_002850.3	851	Cgc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790090	40790090	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	53	798	2	ENST00000373198.4:c.2641del	p.Arg881GlyfsTer20	p.R881Gfs*20	ENST00000373198	NM_133170.3	881	Cgg/gg																																																																															
KIT	3815	MSKCC	GRCh37	4	55561861	55561861	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201872586		P-0057414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	23	292	0	ENST00000288135.5:c.251C>T	p.Thr84Met	p.T84M	ENST00000288135	NM_000222.2	84	aCg/aTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187531001	187531001	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754491592		P-0057414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	62	447	0	ENST00000441802.2:c.10022C>T	p.Thr3341Met	p.T3341M	ENST00000441802	NM_005245.3	3341	aCg/aTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970923	79970923	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	122	531	0	ENST00000265081.6:c.1151del	p.Gly384AlafsTer31	p.G384Afs*31	ENST00000265081	NM_002439.4	383	aaG/aa																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271560	26271560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	136	450	0	ENST00000305910.3:c.53G>A	p.Arg18His	p.R18H	ENST00000305910	NM_003534.2	18	cGc/cAc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467654	50467654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	169	550	0	ENST00000331340.3:c.889G>A	p.Ala297Thr	p.A297T	ENST00000331340	NM_006060.4	297	Gcc/Acc																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538768	23538769	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAGGTATGGGTAGTAAGGATAGCTGTTATACACGGAGACCAGGCAGC			P-0057414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	62	428	0	ENST00000380871.4:c.670_671insGCTGCCTGGTCTCCGTGTATAACAGCTATCCTTACTACCCATACCTGT	p.Leu223_Tyr224insCysCysLeuValSerValTyrAsnSerTyrProTyrTyrProTyrLeu	p.L223_Y224insCCLVSVYNSYPYYPYL	ENST00000380871	NM_006167.3	224	tac/tGCTGCCTGGTCTCCGTGTATAACAGCTATCCTTACTACCCATACCTGTac																																																																															
TEK	7010	MSKCC	GRCh37	9	27192559	27192559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766717660		P-0057414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	199	501	1	ENST00000380036.4:c.1562G>A	p.Arg521His	p.R521H	ENST00000380036	NM_000459.3	521	cGt/cAt																																																																															
ARAF	369	MSKCC	GRCh37	X	47430809	47430809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	97	534	2	ENST00000377045.4:c.1774G>A	p.Asp592Asn	p.D592N	ENST00000377045	NM_001654.4	592	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0057415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	507	1038	0	ENST00000269305.4:c.321C>G	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taG																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0057416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	100	545	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0057416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	505	1261	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876524	35876524	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	214	625	0	ENST00000303115.3:c.1316C>A	p.Thr439Asn	p.T439N	ENST00000303115	NM_002185.3	439	aCt/aAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974799	21974799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	128	283	0	ENST00000304494.5:c.28G>T	p.Glu10Ter	p.E10*	ENST00000304494	NM_000077.4	10	Gag/Tag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523534	106523534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	106	245	0	ENST00000359195.3:c.2686G>A	p.Val896Met	p.V896M	ENST00000359195	NM_002649.2	896	Gtg/Atg																																																																															
KDR	3791	MSKCC	GRCh37	4	55984968	55984968	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0057416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	126	375	0	ENST00000263923.4:c.162-1G>T		p.X54_splice	ENST00000263923	NM_002253.2	54																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8486014	8486014	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs375803455		P-0057416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	185	679	0	ENST00000356435.5:c.2803G>T	p.Val935Phe	p.V935F	ENST00000356435		935	Gtc/Ttc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81534662	81534662	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs755428708		P-0057416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	108	367	0	ENST00000298171.2:c.307G>T	p.Val103Leu	p.V103L	ENST00000298171	NM_000369.2	103	Gtg/Ttg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103506670	103506670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	34	241	0	ENST00000355739.4:c.413G>T	p.Arg138Leu	p.R138L	ENST00000355739	NM_000123.3	138	cGa/cTa																																																																															
SMO	6608	MSKCC	GRCh37	7	128846362	128846362	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766211091		P-0057416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	354	995	0	ENST00000249373.3:c.1198C>T	p.Arg400Cys	p.R400C	ENST00000249373	NM_005631.4	400	Cgt/Tgt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552679	18552679	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	192	710	0	ENST00000266497.5:c.2090G>T	p.Ser697Ile	p.S697I	ENST00000266497		697	aGt/aTt																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134901	41134901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	76	463	0	ENST00000379561.5:c.727G>A	p.Gly243Ser	p.G243S	ENST00000379561	NM_002015.3	243	Ggt/Agt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103528179	103528179	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	77	443	0	ENST00000355739.4:c.3487G>T	p.Val1163Leu	p.V1163L	ENST00000355739	NM_000123.3	1163	Gtg/Ttg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423578	88423578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	242	668	0	ENST00000360948.2:c.2257G>T	p.Val753Leu	p.V753L	ENST00000360948	NM_001012338.2	753	Gta/Tta																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144797	11144797	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0057416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	272	690	0	ENST00000344626.4:c.3874-2A>G		p.X1292_splice	ENST00000344626	NM_003072.3	1292																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36219925	36219925	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1184	462	1057	1	ENST00000222270.7:c.4727A>T	p.Glu1576Val	p.E1576V	ENST00000222270	NM_014727.1	1576	gAg/gTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50917080	50917080	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1731	537	1477	0	ENST00000440232.2:c.2332G>C	p.Ala778Pro	p.A778P	ENST00000440232	NM_002691.3	778	Gcc/Ccc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52729006	52729006	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	291	706	0	ENST00000322088.6:c.1698G>T	p.Lys566Asn	p.K566N	ENST00000322088	NM_014225.5	566	aaG/aaT																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99180027	99180028	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0057416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1256	190	932	0	ENST00000074304.5:c.1970_1971delinsAT	p.Met657Asn	p.M657N	ENST00000074304	NM_001134224.1	657	aTG/aAT																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017811	31017811	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1630	330	1209	1	ENST00000375687.4:c.673C>T	p.Gln225Ter	p.Q225*	ENST00000375687	NM_015338.5	225	Cag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40828010	40828010	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	273	596	0	ENST00000373198.4:c.2418G>C	p.Gln806His	p.Q806H	ENST00000373198	NM_133170.3	806	caG/caC																																																																															
PMS2	5395	MSKCC	GRCh37	7	6043414	6043414	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	15	108	0	ENST00000265849.7:c.260A>T	p.His87Leu	p.H87L	ENST00000265849	NM_000535.5	87	cAt/cTt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981406	70981407	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0057416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	410	1155	0	ENST00000276594.2:c.689dup	p.Asp231ArgfsTer6	p.D231Rfs*6	ENST00000276594	NM_024504.3	230	cca/ccCa																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249588	110249588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	502	1459	2	ENST00000374672.4:c.1087C>T	p.Leu363Phe	p.L363F	ENST00000374672	NM_004235.4	363	Ctc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0057438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	242	353	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	346	846	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266512	198266512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	139	361	0	ENST00000335508.6:c.2324G>A	p.Arg775Gln	p.R775Q	ENST00000335508	NM_012433.2	775	cGa/cAa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039405	47039405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	66	763	2	ENST00000329236.7:c.797G>A	p.Arg266His	p.R266H	ENST00000329236	NM_001204466.1	266	cGc/cAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636815	8636815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	259	489	0	ENST00000356435.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000356435		32	Gat/Tat																																																																															
MGA	23269	MSKCC	GRCh37	15	41961791	41961791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	56	401	1	ENST00000219905.7:c.699C>A	p.Phe233Leu	p.F233L	ENST00000219905	NM_001164273.1	233	ttC/ttA																																																																															
LMO1	4004	MSKCC	GRCh37	11	8248619	8248619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	358	885	0	ENST00000335790.3:c.268G>T	p.Ala90Ser	p.A90S	ENST00000335790	NM_002315.2	90	Gct/Tct																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941185	71941185	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	418	985	0	ENST00000298229.2:c.962del	p.Gly321ValfsTer3	p.G321Vfs*3	ENST00000298229	NM_001567.3	320	ctG/ct																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434752	110434752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	241	396	0	ENST00000375856.3:c.3649G>T	p.Gly1217Cys	p.G1217C	ENST00000375856	NM_003749.2	1217	Ggc/Tgc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857599	9857599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	234	541	0	ENST00000330684.3:c.3802C>A	p.Gln1268Lys	p.Q1268K	ENST00000330684	NM_001134407.1	1268	Cag/Aag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602431	10602431	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	300	656	0	ENST00000171111.5:c.1147T>C	p.Ser383Pro	p.S383P	ENST00000171111	NM_203500.1	383	Tcg/Ccg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735541	40735541	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	245	653	0	ENST00000373198.4:c.3332G>C	p.Gly1111Ala	p.G1111A	ENST00000373198	NM_133170.3	1111	gGc/gCc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876421	35876421	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	299	803	1	ENST00000303115.3:c.1213C>A	p.Leu405Met	p.L405M	ENST00000303115	NM_002185.3	405	Ctg/Atg																																																																															
STK19	8859	MSKCC	GRCh37	6	31940410	31940410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	432	849	0	ENST00000375331.2:c.443C>T	p.Ala148Val	p.A148V	ENST00000375331	NM_004197.1	148	gCg/gTg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729268	41729268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	206	427	0	ENST00000242208.4:c.1261G>A	p.Glu421Lys	p.E421K	ENST00000242208	NM_002192.2	421	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0057457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	112	410	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0057457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	170	744	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357502	89357502	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	184	897	1	ENST00000301030.4:c.316C>T	p.Arg106Ter	p.R106*	ENST00000301030	NM_001256183.1	106	Cga/Tga																																																																															
PREX2	80243	MSKCC	GRCh37	8	68942842	68942842	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	180	711	0	ENST00000288368.4:c.654G>T	p.Met218Ile	p.M218I	ENST00000288368	NM_024870.2	218	atG/atT																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603038	48603039	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGCAGCAGCAGGCGGCTACTGCACAAGC			P-0057457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	100	427	0	ENST00000342988.3:c.1349_1376dup	p.Ala460GlyfsTer43	p.A460Gfs*43	ENST00000342988	NM_005359.5	447	atg/aTGCAGCAGCAGGCGGCTACTGCACAAGCtg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416138	49416138	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0057457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	146	430	0	ENST00000301067.7:c.16339-2A>G		p.X5447_splice	ENST00000301067	NM_003482.3	5447																																																																																
XIAP	331	MSKCC	GRCh37	X	123019589	123019589	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	165	548	0	ENST00000355640.3:c.77A>T	p.Glu26Val	p.E26V	ENST00000355640		26	gAg/gTg																																																																															
ATM	472	MSKCC	GRCh37	11	108199839	108199839	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587779861		P-0026255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	34	236	0	ENST00000278616.4:c.7181C>T	p.Ser2394Leu	p.S2394L	ENST00000278616	NM_000051.3	2394	tCa/tTa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374642	118374642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	29	249	0	ENST00000534358.1:c.8035G>A	p.Glu2679Lys	p.E2679K	ENST00000534358	NM_005933.3	2679	Gaa/Aaa																																																																															
ACVR1	90	MSKCC	GRCh37	2	158626939	158626939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	56	382	0	ENST00000263640.3:c.731C>T	p.Ser244Leu	p.S244L	ENST00000263640	NM_001105.4	244	tCa/tTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242480	+	frameshift_variant	Frame_Shift_Del	DEL	TTAAGAGAAGCA	TTAAGAGAAGCA	C			P-0026255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	101	390	0	ENST00000275493.2:c.2239_2250delinsC	p.Leu747HisfsTer12	p.L747Hfs*12	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCA/C																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717715	89717716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1393832338		P-0038250-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			489	182	487	1	ENST00000371953.3:c.741dup	p.Pro248ThrfsTer5	p.P248Tfs*5	ENST00000371953	NM_000314.4	247	tta/ttAa																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073671	8073671	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038250-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			640	83	517	0	ENST00000377482.5:c.988T>G	p.Ser330Ala	p.S330A	ENST00000377482	NM_018948.3	330	Tcg/Gcg																																																																															
STK40	83931	MSKCC	GRCh37	1	36820829	36820829	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038250-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			847	105	676	0	ENST00000373129.3:c.548G>T	p.Arg183Leu	p.R183L	ENST00000373129	NM_032017.1	183	cGc/cTc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111065	193111065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038250-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			338	40	268	0	ENST00000367435.3:c.598G>A	p.Asp200Asn	p.D200N	ENST00000367435	NM_024529.4	200	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7579437	+	splice_acceptor_variant,splice_donor_variant,frameshift_variant,stop_lost,intron_variant	Splice_Site	DEL	CGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAAGCAACTGGAAGACGGCAGCAAAGAAACAAACATGCGTAAGCACCTCCTGCAACCCACTAGCGAGCTAGAGAGAGTTGGCGTCTACACCTCAGGAGCTTTTCTTTTTTTTTTTTTTTTTTGAGATAGGGTCTTGCTCTGTCACTCAGGCTGGAGCACAGTGGTGTGATCACAGCTCACTGCAGCCTCCATCTCCTGGCCTCAAGTGATCTTCCCACCTCAGCCTCCTAAGTGGCTGGGACTATAGGTGTGCACCACCATGCCTGGCTAATTTTTTGTATTTTTTTGTAGAGACGAGGTTTCATCATGTTACCCAGGCTGGTCTTGAACTCCTGGGCTCAGGTGATCTGCCTGCCTTGGCCTCTTTGAGAGTGCTGGGATTGCAGGTGTGAGCCACCAAGCCTGGTCAGGAGCTTATTTTCAAAAGCCAAGGAATACACGTGGATGAAGAAAAAGAAAAGTTCTGCATCCCCAGGAGAGATGCTGAGGGTGTGATGGGATGGATAAAAGCCCAAATTCAAGGGGGGAATATTCAACTTTGGGACAGGAGTCAGAGATCACACATTAAGTGGGTAAACTATAAAAAAACACTGACAGGAAGCCAAAGGGTGAAGAGGAATCCCAAAGTTCCAAACAAAAGAAATGCAGGGGGATACGGCCAGGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAGAAGCCCAGACGGAAACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGGACAGAAGATGACAGGGGCCAGGAGGGGGCTGGTGCAGGGGC	CGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAAGCAACTGGAAGACGGCAGCAAAGAAACAAACATGCGTAAGCACCTCCTGCAACCCACTAGCGAGCTAGAGAGAGTTGGCGTCTACACCTCAGGAGCTTTTCTTTTTTTTTTTTTTTTTTGAGATAGGGTCTTGCTCTGTCACTCAGGCTGGAGCACAGTGGTGTGATCACAGCTCACTGCAGCCTCCATCTCCTGGCCTCAAGTGATCTTCCCACCTCAGCCTCCTAAGTGGCTGGGACTATAGGTGTGCACCACCATGCCTGGCTAATTTTTTGTATTTTTTTGTAGAGACGAGGTTTCATCATGTTACCCAGGCTGGTCTTGAACTCCTGGGCTCAGGTGATCTGCCTGCCTTGGCCTCTTTGAGAGTGCTGGGATTGCAGGTGTGAGCCACCAAGCCTGGTCAGGAGCTTATTTTCAAAAGCCAAGGAATACACGTGGATGAAGAAAAAGAAAAGTTCTGCATCCCCAGGAGAGATGCTGAGGGTGTGATGGGATGGATAAAAGCCCAAATTCAAGGGGGGAATATTCAACTTTGGGACAGGAGTCAGAGATCACACATTAAGTGGGTAAACTATAAAAAAACACTGACAGGAAGCCAAAGGGTGAAGAGGAATCCCAAAGTTCCAAACAAAAGAAATGCAGGGGGATACGGCCAGGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAGAAGCCCAGACGGAAACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGGACAGAAGATGACAGGGGCCAGGAGGGGGCTGGTGCAGGGGC	-			P-0038250-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1245	188	1249	0	ENST00000269305.4:c.250_475del		p.X84_splice	ENST00000269305	NM_001126112.2	84	GCCCCTGCACCAGCCCCCTCCTGGCCCCTGTCATCTTCTGTCCCTTCCCAGAAAACCTACCAGGGCAGCTACGGTTTCCGTCTGGGCTTCTTGCATTCTGGGACAGCCAAGTCTGTGACTTGCACGGTCAGTTGCCCTGAGGGGCTGGCTTCCATGAGACTTCAATGCCTGGCCGTATCCCCCTGCATTTCTTTTGTTTGGAACTTTGGGATTCCTCTTCACCCTTTGGCTTCCTGTCAGTGTTTTTTTATAGTTTACCCACTTAATGTGTGATCTCTGACTCCTGTCCCAAAGTTGAATATTCCCCCCTTGAATTTGGGCTTTTATCCATCCCATCACACCCTCAGCATCTCTCCTGGGGATGCAGAACTTTTCTTTTTCTTCATCCACGTGTATTCCTTGGCTTTTGAAAATAAGCTCCTGACCAGGCTTGGTGGCTCACACCTGCAATCCCAGCACTCTCAAAGAGGCCAAGGCAGGCAGATCACCTGAGCCCAGGAGTTCAAGACCAGCCTGGGTAACATGATGAAACCTCGTCTCTACAAAAAAATACAAAAAATTAGCCAGGCATGGTGGTGCACACCTATAGTCCCAGCCACTTAGGAGGCTGAGGTGGGAAGATCACTTGAGGCCAGGAGATGGAGGCTGCAGTGAGCTGTGATCACACCACTGTGCTCCAGCCTGAGTGACAGAGCAAGACCCTATCTCAAAAAAAAAAAAAAAAAAGAAAAGCTCCTGAGGTGTAGACGCCAACTCTCTCTAGCTCGCTAGTGGGTTGCAGGAGGTGCTTACGCATGTTTGTTTCTTTGCTGCCGTCTTCCAGTTGCTTTATCTGTTCACTTGTGCCCTGACTTTCAACTCTGTCTCCTTCCTCTTCCTACAGTACTCCCCTGCCCTCAACAAGATGTTTTGCCAACTGGCCAAGACCTGCCCTGTGCAGCTGTGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGcc/cc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276641	15276641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038250-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1400	182	1157	0	ENST00000263388.2:c.5624C>T	p.Pro1875Leu	p.P1875L	ENST00000263388	NM_000435.2	1875	cCc/cTc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946454	2946454	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038250-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1247	153	1046	0	ENST00000396946.4:c.3283A>G	p.Thr1095Ala	p.T1095A	ENST00000396946	NM_032415.4	1095	Acg/Gcg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39916501	39916501	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038250-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1196	171	1061	0	ENST00000378444.4:c.4502T>C	p.Leu1501Pro	p.L1501P	ENST00000378444	NM_001123385.1	1501	cTg/cCg																																																																															
ARAF	369	MSKCC	GRCh37	X	47424212	47424212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038250-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			923	131	778	0	ENST00000377045.4:c.217G>T	p.Ala73Ser	p.A73S	ENST00000377045	NM_001654.4	73	Gcc/Tcc																																																																															
MED12	9968	MSKCC	GRCh37	X	70345527	70345527	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038250-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			758	111	611	0	ENST00000374080.3:c.2386A>G	p.Ile796Val	p.I796V	ENST00000374080		796	Att/Gtt																																																																															
ATRX	546	MSKCC	GRCh37	X	76764102	76764102	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038250-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			567	83	507	0	ENST00000373344.5:c.7206C>G	p.Ile2402Met	p.I2402M	ENST00000373344	NM_000489.3	2402	atC/atG																																																																															
MGA	23269	MSKCC	GRCh37	15	42058285	42058285	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038250-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			445	48	363	0	ENST00000219905.7:c.8005A>T	p.Ser2669Cys	p.S2669C	ENST00000219905	NM_001164273.1	2669	Agc/Tgc																																																																															
IRF4	3662	MSKCC	GRCh37	6	405026	405026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038250-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			680	45	510	0	ENST00000380956.4:c.1108G>A	p.Ala370Thr	p.A370T	ENST00000380956	NM_001195286.1	370	Gcg/Acg																																																																															
MED12	9968	MSKCC	GRCh37	X	70356353	70356353	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	116	398	0	ENST00000374080.3:c.5248G>T	p.Glu1750Ter	p.E1750*	ENST00000374080		1750	Gag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242486	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAACATCT	ATTAAGAGAAGCAACATCT	T			P-0040465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	32	478	0	ENST00000275493.2:c.2238_2255del	p.Glu746_Ser752delinsAsp	p.E746_S752delinsD	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACATCT/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577123	7577123	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs876660333		P-0056655-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			257	457	488	0	ENST00000269305.4:c.815T>G	p.Val272Gly	p.V272G	ENST00000269305	NM_001126112.2	272	gTg/gGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242470	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC	rs397517096		P-0056655-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			238	485	258	0	ENST00000275493.2:c.2239_2240delinsCC	p.Leu747Pro	p.L747P	ENST00000275493	NM_005228.3	747	TTa/CCa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449815	149449815	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056655-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			567	283	594	0	ENST00000286301.3:c.1249C>A	p.Leu417Ile	p.L417I	ENST00000286301	NM_005211.3	417	Ctt/Att																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138198282	138198282	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056655-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	77	156	0	ENST00000237289.4:c.875del	p.Thr292LysfsTer7	p.T292Kfs*7	ENST00000237289	NM_001270507.1	292	aCa/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0056796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1993	217	557	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0056796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			229	1418	310	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0056796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	446	998	1	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115386	115115386	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0056796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			505	187	413	2	ENST00000257566.3:c.940del	p.Arg314GlufsTer9	p.R314Efs*9	ENST00000257566	NM_016569.3	314	Aga/ga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859782	151859782	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0056796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			327	150	372	0	ENST00000262189.6:c.10880C>G	p.Ser3627Ter	p.S3627*	ENST00000262189	NM_170606.2	3627	tCa/tGa																																																																															
RB1	5925	MSKCC	GRCh37	13	48955569	48955570	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0056796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			97	46	264	0	ENST00000267163.4:c.1686dup	p.Trp563MetfsTer9	p.W563Mfs*9	ENST00000267163	NM_000321.2	562	gca/gcAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907209	32907209	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138734772		P-0056796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			439	83	372	0	ENST00000380152.3:c.1594G>C	p.Glu532Gln	p.E532Q	ENST00000380152		532	Gaa/Caa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115729	8115729	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057070-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	54	367	0	ENST00000346208.3:c.1075G>T	p.Glu359Ter	p.E359*	ENST00000346208		359	Gaa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432497	49432497	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775911186		P-0057070-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			487	66	865	1	ENST00000301067.7:c.8642G>A	p.Arg2881Gln	p.R2881Q	ENST00000301067	NM_003482.3	2881	cGg/cAg																																																																															
CBFB	865	MSKCC	GRCh37	16	67070623	67070633	+	frameshift_variant	Frame_Shift_Del	DEL	CGAGAGTATGT	CGAGAGTATGT	-			P-0057070-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			143	56	201	0	ENST00000412916.2:c.250_260del	p.Glu84LeufsTer28	p.E84Lfs*28	ENST00000412916		83	CGAGAGTATGTc/c																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161764	56161765	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTCA			P-0057070-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			224	78	348	0	ENST00000399503.3:c.1263_1267dup	p.Ser423CysfsTer15	p.S423Cfs*15	ENST00000399503	NM_005921.1	421	ttg/tTGTCAtg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161165	56161177	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGAACTGCAGCTG	AGAACTGCAGCTG	-			P-0057070-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			194	67	274	0	ENST00000399503.3:c.1036-2_1046del		p.X346_splice	ENST00000399503	NM_005921.1	346																																																																																
CDH1	999	MSKCC	GRCh37	16	68835794	68835794	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0057355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	275	418	1	ENST00000261769.5:c.385C>T	p.Gln129Ter	p.Q129*	ENST00000261769	NM_004360.3	129	Cag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914742	32914742	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	104	302	0	ENST00000380152.3:c.6250G>C	p.Asp2084His	p.D2084H	ENST00000380152		2084	Gat/Cat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831213	72831213	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	277	413	0	ENST00000268489.5:c.5368del	p.Leu1790TyrfsTer24	p.L1790Yfs*24	ENST00000268489	NM_006885.3	1790	Cta/ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0057369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	345	837	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3645643	3645643	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs372150541		P-0057369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	170	1077	0	ENST00000294008.3:c.1976C>G	p.Ser659Trp	p.S659W	ENST00000294008	NM_032444.2	659	tCg/tGg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95598930	95598937	+	frameshift_variant	Frame_Shift_Del	DEL	GTAGTACT	GTAGTACT	-			P-0057369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	53	418	0	ENST00000343455.3:c.222_229del	p.Val75HisfsTer2	p.V75Hfs*2	ENST00000343455	NM_177438.2	74	gcAGTACTACtc/gctc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046965	128046965	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	181	602	0	ENST00000285398.2:c.770A>T	p.Lys257Met	p.K257M	ENST00000285398	NM_000122.1	257	aAg/aTg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225368527	225368527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	48	295	0	ENST00000264414.4:c.1219G>A	p.Glu407Lys	p.E407K	ENST00000264414	NM_003590.4	407	Gaa/Aaa																																																																															
ATRX	546	MSKCC	GRCh37	X	76972714	76972714	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	50	298	0	ENST00000373344.5:c.27C>G	p.Ser9Arg	p.S9R	ENST00000373344	NM_000489.3	9	agC/agG																																																																															
PMS1	5378	MSKCC	GRCh37	2	190732574	190732574	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	31	384	0	ENST00000441310.2:c.2392G>C	p.Asp798His	p.D798H	ENST00000441310	NM_000534.4	798	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	368	1105	4	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527925	157527925	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1377877762		P-0057370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	193	570	0	ENST00000346085.5:c.5650C>T	p.Arg1884Trp	p.R1884W	ENST00000346085	NM_020732.3	1884	Cgg/Tgg																																																																															
RET	5979	MSKCC	GRCh37	10	43600423	43600423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1259626672		P-0057370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	100	839	0	ENST00000355710.3:c.649G>A	p.Ala217Thr	p.A217T	ENST00000355710	NM_020975.4	217	Gcc/Acc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858429	9858429	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	56	461	0	ENST00000330684.3:c.2972C>A	p.Ser991Tyr	p.S991Y	ENST00000330684	NM_001134407.1	991	tCc/tAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492796	56492796	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	304	531	0	ENST00000407977.2:c.143T>A	p.Ile48Asn	p.I48N	ENST00000407977		48	aTc/aAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125389	47125389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	51	343	0	ENST00000409792.3:c.5881G>C	p.Glu1961Gln	p.E1961Q	ENST00000409792	NM_014159.6	1961	Gag/Cag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81941370	81941370	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	56	492	0	ENST00000359376.3:c.1548A>C	p.Glu516Asp	p.E516D	ENST00000359376	NM_002661.3	516	gaA/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0057371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	354	684	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0057371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	214	329	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0057371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	94	391	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0057371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	123	170	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247373	153247373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	102	245	0	ENST00000281708.4:c.1429G>A	p.Gly477Ser	p.G477S	ENST00000281708	NM_033632.3	477	Ggt/Agt																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152357799	152357799	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	39	292	0	ENST00000359321.1:c.108T>A	p.Asp36Glu	p.D36E	ENST00000359321	NM_005431.1	36	gaT/gaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0057372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	135	830	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0057372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	74	361	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971037	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0057372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	127	666	0	ENST00000304494.5:c.321_322del	p.Asp108CysfsTer11	p.D108Cfs*11	ENST00000304494	NM_000077.4	107	cgCGat/cgat																																																																															
PGR	5241	MSKCC	GRCh37	11	100998499	100998499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	62	881	1	ENST00000325455.5:c.1303G>A	p.Gly435Arg	p.G435R	ENST00000325455	NM_001202474.3	435	Ggg/Agg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440938	56440939	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0057372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	158	743	0	ENST00000407977.2:c.398dup	p.Ala134SerfsTer7	p.A134Sfs*7	ENST00000407977		133	gga/ggGa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120479967	120479967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	113	628	0	ENST00000256646.2:c.3460G>A	p.Ala1154Thr	p.A1154T	ENST00000256646	NM_024408.3	1154	Gcg/Acg																																																																															
MET	4233	MSKCC	GRCh37	7	116340266	116340266	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	149	236	0	ENST00000397752.3:c.1128G>T	p.Lys376Asn	p.K376N	ENST00000397752	NM_000245.2	376	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs483352695		P-0057437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	419	875	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0057437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	78	269	1	ENST00000257430.4:c.3919dup	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs28934575		P-0057437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	407	841	0	ENST00000269305.4:c.733G>C	p.Gly245Arg	p.G245R	ENST00000269305	NM_001126112.2	245	Ggc/Cgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs770248150		P-0057437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	192	492	0	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																																																															
DICER1	23405	MSKCC	GRCh37	14	95599668	95599668	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367797765		P-0057437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	201	460	0	ENST00000343455.3:c.128C>T	p.Thr43Met	p.T43M	ENST00000343455	NM_177438.2	43	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0057437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	112	337	0	ENST00000257430.4:c.4063del	p.Ser1355LeufsTer60	p.S1355Lfs*60	ENST00000257430	NM_000038.5	1354	Ttt/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0057568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	1215	343	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0057568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	271	655	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874065	151874065	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	107	386	0	ENST00000262189.6:c.8473del	p.Glu2825LysfsTer38	p.E2825Kfs*38	ENST00000262189	NM_170606.2	2825	Gaa/aa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44894175	44894175	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0057568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	60	369	0	ENST00000377967.4:c.565-1G>C		p.X189_splice	ENST00000377967	NM_021140.2	189																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0056468-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			248	221	395	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1131691025		P-0056468-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	283	542	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247169	153247169	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056468-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			370	166	278	0	ENST00000281708.4:c.1633T>C	p.Tyr545His	p.Y545H	ENST00000281708	NM_033632.3	545	Tat/Cat																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			287	91	384	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	208	388	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			623	526	853	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
IDH1	3417	MSKCC	GRCh37	2	209108185	209108185	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751364381		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			350	30	385	0	ENST00000345146.2:c.664C>T	p.Arg222Cys	p.R222C	ENST00000345146	NM_005896.2	222	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			713	227	711	1	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349090	11349090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			636	34	419	0	ENST00000332029.2:c.246del	p.Leu84Ter	p.L84*	ENST00000332029	NM_003745.1	82	ggG/gg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1129	298	991	5	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221711	55221711	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760101437		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			684	44	521	0	ENST00000275493.2:c.755G>A	p.Arg252His	p.R252H	ENST00000275493	NM_005228.3	252	cGc/cAc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1144	64	840	4	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1096	318	804	7	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874637	35874637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	123	389	4	ENST00000303115.3:c.799del	p.Arg267GlyfsTer28	p.R267Gfs*28	ENST00000303115	NM_002185.3	265	Aaa/aa																																																																															
ARAF	369	MSKCC	GRCh37	X	47422384	47422384	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			587	170	634	0	ENST00000377045.4:c.23del	p.Pro8LeufsTer26	p.P8Lfs*26	ENST00000377045	NM_001654.4	6	ggC/gg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			559	150	456	5	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882049	36882050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs780753361		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1242	66	834	1	ENST00000358127.4:c.963dup	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	-/C																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922301	178922301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			274	65	343	0	ENST00000263967.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000263967	NM_006218.2	357	cGa/cAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			491	158	521	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	90	452	8	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			603	162	623	2	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100998	41100998	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772057709		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			850	217	703	0	ENST00000373198.4:c.1358G>A	p.Arg453His	p.R453H	ENST00000373198	NM_133170.3	453	cGc/cAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851685	134851685	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377348490		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			588	184	587	1	ENST00000398015.3:c.1091G>A	p.Arg364Gln	p.R364Q	ENST00000398015	NM_004441.4	364	cGg/cAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460504	8460504	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148300682		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			668	188	493	0	ENST00000356435.5:c.3782C>T	p.Thr1261Met	p.T1261M	ENST00000356435		1261	aCg/aTg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131915588	131915588	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769853458		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			159	33	227	1	ENST00000265335.6:c.586C>T	p.Arg196Cys	p.R196C	ENST00000265335		196	Cgt/Tgt																																																																															
RB1	5925	MSKCC	GRCh37	13	48954189	48954191	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GAA	GAA	-			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			223	40	261	0	ENST00000267163.4:c.1396_1398del	p.Glu466del	p.E466del	ENST00000267163	NM_000321.2	464	GAA/-																																																																															
STK11	6794	MSKCC	GRCh37	19	1207168	1207168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	88	798	1	ENST00000326873.7:c.256C>T	p.Arg86Ter	p.R86*	ENST00000326873	NM_000455.4	86	Cga/Tga																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735609	204735609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			513	125	439	0	ENST00000302823.3:c.410C>T	p.Pro137Leu	p.P137L	ENST00000302823	NM_005214.4	137	cCg/cTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	221	454	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
MPL	4352	MSKCC	GRCh37	1	43804304	43804304	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763568293		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	61	682	1	ENST00000372470.3:c.304C>T	p.Arg102Cys	p.R102C	ENST00000372470	NM_005373.2	102	Cgt/Tgt																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17384726	17384726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368554117		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			831	231	674	0	ENST00000359435.4:c.358G>A	p.Ala120Thr	p.A120T	ENST00000359435	NM_001033549.1	120	Gcc/Acc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945028	151945028	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			110	25	67	0	ENST00000262189.6:c.2491A>G	p.Thr831Ala	p.T831A	ENST00000262189	NM_170606.2	831	Act/Gct																																																																															
SPEN	23013	MSKCC	GRCh37	1	16245461	16245461	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1465789087		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	68	344	0	ENST00000375759.3:c.1436C>T	p.Ala479Val	p.A479V	ENST00000375759	NM_015001.2	479	gCg/gTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161938	47161939	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	93	451	0	ENST00000409792.3:c.4187dup	p.Asn1396LysfsTer2	p.N1396Kfs*2	ENST00000409792	NM_014159.6	1396	aat/aaAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410085	139410085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775217381		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1346	79	1023	2	ENST00000277541.6:c.1753G>A	p.Ala585Thr	p.A585T	ENST00000277541	NM_017617.3	585	Gcc/Acc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563051	21563051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	74	820	1	ENST00000382592.4:c.868C>T	p.Pro290Ser	p.P290S	ENST00000382592	NM_014572.2	290	Ccc/Tcc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343647	343647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1212	76	887	1	ENST00000262320.3:c.2027G>A	p.Gly676Asp	p.G676D	ENST00000262320	NM_003502.3	676	gGc/gAc																																																																															
CD276	80381	MSKCC	GRCh37	15	73994829	73994829	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751833994		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			351	82	315	1	ENST00000318443.5:c.313G>A	p.Ala105Thr	p.A105T	ENST00000318443	NM_001024736.1	105	Gca/Aca																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46583310	46583310	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770783327		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	155	375	0	ENST00000263734.3:c.238G>A	p.Glu80Lys	p.E80K	ENST00000263734	NM_001430.4	80	Gaa/Aaa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400033	139400033	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200232299		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			979	291	927	1	ENST00000277541.6:c.4315G>A	p.Asp1439Asn	p.D1439N	ENST00000277541	NM_017617.3	1439	Gac/Aac																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911125	29911125	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199474508		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			415	153	487	0	ENST00000376809.5:c.424T>C	p.Tyr142His	p.Y142H	ENST00000376809	NM_002116.7	142	Tac/Cac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224532	36224532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759167832		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	295	954	1	ENST00000222270.7:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000222270	NM_014727.1	2332	Cgt/Tgt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224183	36224183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			719	199	774	1	ENST00000222270.7:c.6733G>A	p.Val2245Met	p.V2245M	ENST00000222270	NM_014727.1	2245	Gtg/Atg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972794	25972794	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761581753		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			755	44	446	0	ENST00000435504.4:c.1631C>T	p.Ala544Val	p.A544V	ENST00000435504		544	gCg/gTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100424	8100425	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs772396478		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	274	977	1	ENST00000346208.3:c.404dup	p.Ala136GlyfsTer167	p.A136Gfs*167	ENST00000346208		133	tac/taCc																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919836	96919836	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772153618		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			460	121	429	2	ENST00000258439.3:c.427G>A	p.Val143Ile	p.V143I	ENST00000258439	NM_001193304.2	143	Gtc/Atc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660270	227660270	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			792	217	804	2	ENST00000305123.5:c.3185del	p.Gly1062AlafsTer8	p.G1062Afs*8	ENST00000305123	NM_005544.2	1062	gGc/gc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691874	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			415	124	378	0	ENST00000359013.4:c.456_458del	p.Lys153del	p.K153del	ENST00000359013	NM_001024847.2	150	gAAAaa/gaa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563413	21563413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150428840		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1136	278	957	1	ENST00000382592.4:c.506G>A	p.Arg169Gln	p.R169Q	ENST00000382592	NM_014572.2	169	cGg/cAg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206652330	206652330	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1427	88	782	3	ENST00000367120.3:c.1042del	p.Arg348AspfsTer32	p.R348Dfs*32	ENST00000367120	NM_014002.3	346	gCc/gc																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804268	46804268	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750244360		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			826	241	761	0	ENST00000290295.7:c.739C>T	p.Arg247Cys	p.R247C	ENST00000290295	NM_006361.5	247	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952076	178952076	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			325	73	298	0	ENST00000263967.3:c.3131A>T	p.Asn1044Ile	p.N1044I	ENST00000263967	NM_006218.2	1044	aAt/aTt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803738	1803738	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774047997		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			857	308	802	0	ENST00000260795.2:c.916G>A	p.Val306Ile	p.V306I	ENST00000260795		306	Gtt/Att																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658880	3658880	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149117119		P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			795	83	581	1	ENST00000294008.3:c.86G>A	p.Arg29His	p.R29H	ENST00000294008	NM_032444.2	29	cGc/cAc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982968	201982968	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1233	65	718	0	ENST00000359651.3:c.817A>G	p.Thr273Ala	p.T273A	ENST00000359651		273	Acc/Gcc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949319	71949319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			798	199	801	0	ENST00000298229.2:c.3699G>T	p.Glu1233Asp	p.E1233D	ENST00000298229	NM_001567.3	1233	gaG/gaT																																																																															
PAK1	5058	MSKCC	GRCh37	11	77051739	77051741	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			768	233	586	0	ENST00000356341.3:c.1066_1068del	p.Val356del	p.V356del	ENST00000356341	NM_002576.4	356	GTG/-																																																																															
ATM	472	MSKCC	GRCh37	11	108158391	108158391	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			396	34	453	0	ENST00000278616.4:c.4058A>G	p.Glu1353Gly	p.E1353G	ENST00000278616	NM_000051.3	1353	gAg/gGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420427	49420427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			957	93	758	0	ENST00000301067.7:c.15322C>T	p.Arg5108Cys	p.R5108C	ENST00000301067	NM_003482.3	5108	Cgt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424764	49424764	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			948	304	809	0	ENST00000301067.7:c.13583del	p.Ala4528GlufsTer6	p.A4528Efs*6	ENST00000301067	NM_003482.3	4528	gCa/ga																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865703	57865705	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			908	253	812	0	ENST00000228682.2:c.3187_3189del	p.Pro1063del	p.P1063del	ENST00000228682	NM_005269.2	1060	agTCCt/agt																																																																															
POLE	5426	MSKCC	GRCh37	12	133254022	133254023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			539	167	490	0	ENST00000320574.5:c.727dup	p.Trp243LeufsTer20	p.W243Lfs*20	ENST00000320574	NM_006231.2	243	tgg/tTgg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2112553	2112554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGACG			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			907	251	775	0	ENST00000219476.3:c.1315_1319dup	p.Trp441ThrfsTer10	p.W441Tfs*10	ENST00000219476	NM_000548.3	438	aag/aaGGACGg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2114429	2114429	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	264	828	0	ENST00000219476.3:c.1599+1G>A		p.X533_splice	ENST00000219476	NM_000548.3	533																																																																																
ERCC4	2072	MSKCC	GRCh37	16	14041672	14041672	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			643	189	550	0	ENST00000311895.7:c.2219G>T	p.Arg740Leu	p.R740L	ENST00000311895	NM_005236.2	740	cGc/cTc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89813252	89813252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			791	247	643	0	ENST00000389301.3:c.3395C>T	p.Ala1132Val	p.A1132V	ENST00000389301	NM_000135.2	1132	gCc/gTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29667652	29667652	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	112	339	0	ENST00000358273.4:c.7051T>G	p.Phe2351Val	p.F2351V	ENST00000358273	NM_001042492.2	2351	Ttc/Gtc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4123862	4123862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	129	348	0	ENST00000262948.5:c.11G>A	p.Arg4Gln	p.R4Q	ENST00000262948	NM_030662.3	4	cGg/cAg																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626907	14626907	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			827	260	674	0	ENST00000254322.2:c.868A>G	p.Arg290Gly	p.R290G	ENST00000254322	NM_006145.1	290	Agg/Ggg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296164	15296164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	324	918	0	ENST00000263388.2:c.2200G>A	p.Ala734Thr	p.A734T	ENST00000263388	NM_000435.2	734	Gcc/Acc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17946789	17946789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	132	833	2	ENST00000458235.1:c.1858C>T	p.Pro620Ser	p.P620S	ENST00000458235	NM_000215.3	620	Cca/Tca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211727	36211729	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			945	222	792	1	ENST00000222270.7:c.1482_1484del	p.Pro495del	p.P495del	ENST00000222270	NM_014727.1	493	tCTCct/tct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216480	36216480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1188	235	975	3	ENST00000222270.7:c.3743G>A	p.Arg1248His	p.R1248H	ENST00000222270	NM_014727.1	1248	cGc/cAc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143067059	143067059	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			502	150	392	0	ENST00000262992.4:c.1654A>G	p.Ser552Gly	p.S552G	ENST00000262992	NM_001101669.1	552	Agt/Ggt																																																																															
TERT	7015	MSKCC	GRCh37	5	1268635	1268635	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	98	774	0	ENST00000310581.5:c.2582G>T	p.Gly861Val	p.G861V	ENST00000310581	NM_198253.2	861	gGg/gTg																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790818	89790819	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			928	217	874	1	ENST00000336032.3:c.211dup	p.Gln71ProfsTer137	p.Q71Pfs*137	ENST00000336032	NM_006813.2	69	acc/aCcc																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793683	89793683	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			382	36	338	0	ENST00000336032.3:c.752A>G	p.Lys251Arg	p.K251R	ENST00000336032	NM_006813.2	251	aAg/aGg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117686292	117686292	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			323	24	299	0	ENST00000368508.3:c.3049T>C	p.Ser1017Pro	p.S1017P	ENST00000368508	NM_002944.2	1017	Tct/Cct																																																																															
HGF	3082	MSKCC	GRCh37	7	81334794	81334794	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			403	23	379	0	ENST00000222390.5:c.1922A>G	p.Lys641Arg	p.K641R	ENST00000222390	NM_000601.4	641	aAa/aGa																																																																															
MET	4233	MSKCC	GRCh37	7	116418969	116418969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			420	124	357	0	ENST00000397752.3:c.3480G>A	p.Met1160Ile	p.M1160I	ENST00000397752	NM_000245.2	1160	atG/atA																																																																															
RHEB	6009	MSKCC	GRCh37	7	151167707	151167707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			330	40	286	0	ENST00000262187.5:c.412G>A	p.Ala138Thr	p.A138T	ENST00000262187	NM_005614.3	138	Gca/Aca																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964316	70964316	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			413	39	332	0	ENST00000276594.2:c.1712A>C	p.Tyr571Ser	p.Y571S	ENST00000276594	NM_024504.3	571	tAc/tCc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426118	47426118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			863	297	838	0	ENST00000377045.4:c.638C>T	p.Thr213Met	p.T213M	ENST00000377045	NM_001654.4	213	aCg/aTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	779	888	1	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575023	64575023	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs794728652		P-0057475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	404	455	0	ENST00000337652.1:c.798+1G>A		p.X266_splice	ENST00000337652	NM_130803.2	266																																																																																
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0057476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	322	668	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0057476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	283	618	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0057476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	107	274	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0057476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	146	422	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	100	303	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057749	27057749	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	443	747	1	ENST00000324856.7:c.1459del	p.Gln487SerfsTer132	p.Q487Sfs*132	ENST00000324856	NM_006015.4	486	tCc/tc																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006092	22006092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	275	761	0	ENST00000276925.6:c.311C>T	p.Ala104Val	p.A104V	ENST00000276925	NM_004936.3	104	gCg/gTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711017	114711017	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	277	340	0	ENST00000543371.1:c.241G>T	p.Glu81Ter	p.E81*	ENST00000543371	NM_001198531.1	81	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380277	+	missense_variant	Missense_Mutation	ONP	TTG	TTG	GTC			P-0057476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	161	459	0	ENST00000256078.4:c.181_183delinsGAC	p.Gln61Asp	p.Q61D	ENST00000256078	NM_033360.2	61	CAA/GAC																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0057493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	71	470	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0057493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	62	576	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519947		P-0057493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	180	857	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577144	7577146	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0057493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	250	713	0	ENST00000269305.4:c.792_794del	p.Leu265del	p.L265del	ENST00000269305	NM_001126112.2	264	ctACTg/ctg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710681	114710681	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	64	493	0	ENST00000543371.1:c.166C>T	p.Gln56Ter	p.Q56*	ENST00000543371	NM_001198531.1	56	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174268	112174268	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0057493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	34	452	0	ENST00000257430.4:c.2977A>T	p.Lys993Ter	p.K993*	ENST00000257430	NM_000038.5	993	Aag/Tag																																																																															
INSR	3643	MSKCC	GRCh37	19	7120689	7120689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	174	917	2	ENST00000302850.5:c.3601C>T	p.Arg1201Trp	p.R1201W	ENST00000302850	NM_000208.2	1201	Cgg/Tgg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959106	2959106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs895214237		P-0057493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	170	959	0	ENST00000396946.4:c.2410C>T	p.Arg804Cys	p.R804C	ENST00000396946	NM_032415.4	804	Cgt/Tgt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115269661	115269664	+	frameshift_variant	Frame_Shift_Del	DEL	AGTC	AGTC	-			P-0057493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	39	747	0	ENST00000438362.2:c.1542_1545del	p.Thr515LeufsTer16	p.T515Lfs*16	ENST00000438362	NM_001242891.1	514	ctGACT/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433843	49433843	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	238	1220	1	ENST00000301067.7:c.7710del	p.Thr2571ProfsTer12	p.T2571Pfs*12	ENST00000301067	NM_003482.3	2570	ccC/cc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43762189	43762189	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	81	823	0	ENST00000382044.4:c.1256del	p.Pro419GlnfsTer4	p.P419Qfs*4	ENST00000382044	NM_001141980.1	419	cCa/ca																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013715	12013715	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0057493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	82	377	0	ENST00000353533.5:c.660del	p.Glu221LysfsTer3	p.E221Kfs*3	ENST00000353533	NM_003010.3	219	ttA/tt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117733	70117750	+	inframe_deletion	In_Frame_Del	DEL	CAAGTTCCCCGTGTGCAT	CAAGTTCCCCGTGTGCAT	-			P-0057493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	708	1034	0	ENST00000245479.2:c.202_219del	p.Lys68_Ile73del	p.K68_I73del	ENST00000245479	NM_000346.3	67	gaCAAGTTCCCCGTGTGCATc/gac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296215	15296215	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144163298		P-0057493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	225	1072	0	ENST00000263388.2:c.2149C>T	p.Arg717Cys	p.R717C	ENST00000263388	NM_000435.2	717	Cgc/Tgc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47129703	47129703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	33	444	0	ENST00000409792.3:c.5177G>A	p.Gly1726Asp	p.G1726D	ENST00000409792	NM_014159.6	1726	gGt/gAt																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045756	26045756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	118	684	1	ENST00000540144.1:c.118C>A	p.His40Asn	p.H40N	ENST00000540144	NM_003531.2	40	Cat/Aat																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412420	63412420	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0057493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	317	550	0	ENST00000330258.3:c.747del	p.Thr250LeufsTer32	p.T250Lfs*32	ENST00000330258	NM_152424.3	249	gcT/gc																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156719	20156719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	69	592	0	ENST00000379607.5:c.38G>A	p.Arg13His	p.R13H	ENST00000379607	NM_001412.3	13	cGc/cAc																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652117	36652117	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs114149607		P-0057072-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			600	108	1071	1	ENST00000244741.5:c.239C>T	p.Thr80Met	p.T80M	ENST00000244741	NM_000389.4	80	aCg/aTg																																																																															
RET	5979	MSKCC	GRCh37	10	43596170	43596170	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0057072-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			421	30	575	0	ENST00000355710.3:c.337A>T	p.Asn113Tyr	p.N113Y	ENST00000355710	NM_020975.4	113	Aac/Tac																																																																															
STK11	6794	MSKCC	GRCh37	19	1220391	1220404	+	frameshift_variant	Frame_Shift_Del	DEL	GACGGCCTGGAGTA	GACGGCCTGGAGTA	-			P-0057234-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			510	905	763	4	ENST00000326873.7:c.484_497del	p.Asp162ProfsTer3	p.D162Pfs*3	ENST00000326873	NM_000455.4	162	GACGGCCTGGAGTAc/c																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44950068	44950068	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0057234-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			277	309	403	1	ENST00000377967.4:c.3839del	p.Asn1280IlefsTer12	p.N1280Ifs*12	ENST00000377967	NM_021140.2	1279	cgA/cg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264437	46264437	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057234-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			629	182	399	0	ENST00000371998.3:c.1484A>T	p.His495Leu	p.H495L	ENST00000371998		495	cAt/cTt																																																																															
EP300	2033	MSKCC	GRCh37	22	41553333	41553333	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057234-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			604	251	485	0	ENST00000263253.7:c.3422A>C	p.Tyr1141Ser	p.Y1141S	ENST00000263253	NM_001429.3	1141	tAc/tCc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057238-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	325	715	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115268751	115269472	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCAATACTAAATGTTTTTTATTCCAACACCAAAGAATGGATGGTAAGTTAGCTGTAAAGTTCCTGAAAGTCACGCCTTACCTGTAATGGAAAAAGATTTCCTTATCATGATTGGCTGTTTCAATAAATCCAAAATTATCCTTCAGAGTTGCCACATAACCCAAGAGCCTCTTGGAGTTAGAATTACGACCTAAAAGTCGCACACAAGTTGCAACCTGCTGTCCAGGCCTCTGTTTGTCACTAATACTAAATTCAACCTGTGAAAATTAAGGATGCTCATTAACACCATATCACTTCCACACCAATCTCCTTAACTCAGAAAACAAGACCTATAACTCCCCCAGCGCATGCTTTTCATTCCAAATATCCTTTGTTATTACTTCAATGAAATTGATTTTCACCAAAACATTTATGTCTCATCCCACTTTTCACAAAGGATCAAACTTTTATCTTTCAGTCTGTATTCCTTATAGATTCTGAATTTCTCTAGAGGGCTATCCAAAAACCAAACATATTAAGTATGAGAAAAAATGAACAACAACGTAAAATCTTTGGTGTGCTTTTACTTTGATAATGTTTCAGTAGTAACTGTTTTAACTTTCTTACCAATAACGATTTTATTAAGCATGTTTTATCTAACGTTTAAACAGCTAGATTAACAAGGCTTTGATTAACAAAGAGCTTGACAGACACTTTTAATAAGCTGCTTTCAAATACAAGAT	ATCAATACTAAATGTTTTTTATTCCAACACCAAAGAATGGATGGTAAGTTAGCTGTAAAGTTCCTGAAAGTCACGCCTTACCTGTAATGGAAAAAGATTTCCTTATCATGATTGGCTGTTTCAATAAATCCAAAATTATCCTTCAGAGTTGCCACATAACCCAAGAGCCTCTTGGAGTTAGAATTACGACCTAAAAGTCGCACACAAGTTGCAACCTGCTGTCCAGGCCTCTGTTTGTCACTAATACTAAATTCAACCTGTGAAAATTAAGGATGCTCATTAACACCATATCACTTCCACACCAATCTCCTTAACTCAGAAAACAAGACCTATAACTCCCCCAGCGCATGCTTTTCATTCCAAATATCCTTTGTTATTACTTCAATGAAATTGATTTTCACCAAAACATTTATGTCTCATCCCACTTTTCACAAAGGATCAAACTTTTATCTTTCAGTCTGTATTCCTTATAGATTCTGAATTTCTCTAGAGGGCTATCCAAAAACCAAACATATTAAGTATGAGAAAAAATGAACAACAACGTAAAATCTTTGGTGTGCTTTTACTTTGATAATGTTTCAGTAGTAACTGTTTTAACTTTCTTACCAATAACGATTTTATTAAGCATGTTTTATCTAACGTTTAAACAGCTAGATTAACAAGGCTTTGATTAACAAAGAGCTTGACAGACACTTTTAATAAGCTGCTTTCAAATACAAGAT	-			P-0057238-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			192	39	208	0	ENST00000438362.2:c.1602+132_1778+81del		p.X534_splice	ENST00000438362	NM_001242891.1	534																																																																																
CSDE1	7812	MSKCC	GRCh37	1	115276479	115276479	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0057238-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			573	125	516	0	ENST00000438362.2:c.850-1G>T		p.X284_splice	ENST00000438362	NM_001242891.1	284																																																																																
PMS2	5395	MSKCC	GRCh37	7	6042238	6042238	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057238-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			593	233	548	0	ENST00000265849.7:c.383del	p.Ser128TrpfsTer8	p.S128Wfs*8	ENST00000265849	NM_000535.5	128	tCg/tg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429977	78429978	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1200882279		P-0057487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	61	345	0	ENST00000370768.2:c.901dup	p.Ile301AsnfsTer4	p.I301Nfs*4	ENST00000370768	NM_003902.3	301	ata/aAta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	282	722	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685281	89685281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs1060500116		P-0057487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	27	223	0	ENST00000371953.3:c.176C>G	p.Ser59Ter	p.S59*	ENST00000371953	NM_000314.4	59	tCa/tGa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441815	49441816	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs756471180		P-0057487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	109	612	0	ENST00000301067.7:c.4168dup	p.Ala1390GlyfsTer42	p.A1390Gfs*42	ENST00000301067	NM_003482.3	1390	gca/gGca																																																																															
JAK1	3716	MSKCC	GRCh37	1	65301120	65301120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	145	311	1	ENST00000342505.4:c.3328G>A	p.Glu1110Lys	p.E1110K	ENST00000342505	NM_002227.2	1110	Gaa/Aaa																																																																															
CCND2	894	MSKCC	GRCh37	12	4383348	4383348	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	114	731	0	ENST00000261254.3:c.142C>T	p.Gln48Ter	p.Q48*	ENST00000261254	NM_001759.3	48	Cag/Tag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228572	36228572	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	170	836	0	ENST00000222270.7:c.7586C>G	p.Ser2529Cys	p.S2529C	ENST00000222270	NM_014727.1	2529	tCc/tGc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023726	31023726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	118	704	0	ENST00000375687.4:c.3211G>A	p.Ala1071Thr	p.A1071T	ENST00000375687	NM_015338.5	1071	Gcg/Acg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59858332	59858333	+	missense_variant	Missense_Mutation	DNP	TC	TC	CA			P-0057487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	27	348	1	ENST00000259008.2:c.1662_1663delinsTG	p.Gln554_Thr555delinsHisAla	p.Q554_T555delinsHA	ENST00000259008	NM_032043.2	554	caGAct/caTGct																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061134	38061202	+	inframe_deletion	In_Frame_Del	DEL	GCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTG	GCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTG	-			P-0057488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	180	338	1	ENST00000250448.2:c.787_855del	p.Gln263_Ser285del	p.Q263_S285del	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGC/-																																																																															
MGA	23269	MSKCC	GRCh37	15	42041417	42041417	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0057488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	89	580	0	ENST00000219905.7:c.5613del	p.Ser1873LeufsTer5	p.S1873Lfs*5	ENST00000219905	NM_001164273.1	1871	gTt/gt																																																																															
APC	324	MSKCC	GRCh37	5	112173701	112173701	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0057488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	85	354	0	ENST00000257430.4:c.2411del	p.Asn804IlefsTer16	p.N804Ifs*16	ENST00000257430	NM_000038.5	804	Aat/at																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178947865	178947865	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587776932		P-0057513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	58	319	0	ENST00000263967.3:c.2740G>A	p.Gly914Arg	p.G914R	ENST00000263967	NM_006218.2	914	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0057513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	332	698	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0057513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	143	354	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																															
APC	324	MSKCC	GRCh37	5	112170864	112170864	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0057513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	192	380	0	ENST00000257430.4:c.1958+2T>C		p.X653_splice	ENST00000257430	NM_000038.5	653																																																																																
CARD11	84433	MSKCC	GRCh37	7	2977584	2977584	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746318779		P-0057513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1523	81	855	1	ENST00000396946.4:c.1100C>T	p.Thr367Met	p.T367M	ENST00000396946	NM_032415.4	367	aCg/aTg																																																																															
CBL	867	MSKCC	GRCh37	11	119170290	119170290	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs112330156		P-0057513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	93	340	0	ENST00000264033.4:c.2520T>G	p.Cys840Trp	p.C840W	ENST00000264033	NM_005188.3	840	tgT/tgG																																																																															
TET2	54790	MSKCC	GRCh37	4	106193728	106193728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	54	281	0	ENST00000380013.4:c.4190C>T	p.Thr1397Ile	p.T1397I	ENST00000380013	NM_001127208.2	1397	aCt/aTt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218069	36218069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055607-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			349	158	361	0	ENST00000222270.7:c.4016C>T	p.Pro1339Leu	p.P1339L	ENST00000222270	NM_014727.1	1339	cCg/cTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	80169018	80169018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055607-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	248	601	0	ENST00000265081.6:c.3214G>A	p.Val1072Met	p.V1072M	ENST00000265081	NM_002439.4	1072	Gtg/Atg																																																																															
RAD51B	5890	MSKCC	GRCh37	14	69061316	69061316	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057235-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			155	19	115	0	ENST00000487270.1:c.1151T>G	p.Phe384Cys	p.F384C	ENST00000487270	NM_133509.3	384	tTt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0057352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	130	309	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041007	47041007	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	114	801	0	ENST00000329236.7:c.1303G>T	p.Glu435Ter	p.E435*	ENST00000329236	NM_001204466.1	435	Gag/Tag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8331669	8331669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	171	416	0	ENST00000356435.5:c.5447C>A	p.Ser1816Tyr	p.S1816Y	ENST00000356435		1816	tCc/tAc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526409	31526409	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs202227062		P-0057352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	275	869	0	ENST00000344624.3:c.631C>A	p.Pro211Thr	p.P211T	ENST00000344624		211	Cca/Aca																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465343	120465343	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	132	501	0	ENST00000256646.2:c.4918T>A	p.Phe1640Ile	p.F1640I	ENST00000256646	NM_024408.3	1640	Ttc/Atc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423566	88423566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	71	576	1	ENST00000360948.2:c.2269G>T	p.Gly757Trp	p.G757W	ENST00000360948	NM_001012338.2	757	Ggg/Tgg																																																																															
CENPA	1058	MSKCC	GRCh37	2	27015657	27015657	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	110	502	0	ENST00000335756.4:c.244G>T	p.Val82Leu	p.V82L	ENST00000335756	NM_001809.3	82	Gtg/Ttg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2958133	2958133	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	159	731	0	ENST00000396946.4:c.2599del	p.Ala867HisfsTer47	p.A867Hfs*47	ENST00000396946	NM_032415.4	867	Gca/ca																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55130043	55130043	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774431464		P-0057358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	42	480	1	ENST00000257290.5:c.577G>A	p.Val193Ile	p.V193I	ENST00000257290	NM_006206.4	193	Gtc/Atc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30311643	30311643	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	145	311	0	ENST00000262643.3:c.497T>G	p.Phe166Cys	p.F166C	ENST00000262643	NM_001238.2	166	tTt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0057364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	109	296	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1222006	1222006	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0057364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	388	567	0	ENST00000326873.7:c.920+1G>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																																
MYD88	4615	MSKCC	GRCh37	3	38180273	38180273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs779805093		P-0057364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	237	726	0	ENST00000396334.3:c.121C>T	p.Arg41Ter	p.R41*	ENST00000396334	NM_002468.4	41	Cga/Tga																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944843	31944843	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	220	651	0	ENST00000340398.3:c.258C>A	p.Ser86Arg	p.S86R	ENST00000340398	NM_001013699.2	86	agC/agA																																																																															
STK11	6794	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs137853076		P-0057340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	376	912	0	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	349	856	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																															
AC008738.1	0	MSKCC	GRCh37	19	33792755	33792757	+	splice_acceptor_variant,intron_variant,non_coding_transcript_variant	Splice_Site	DEL	GGC	GGC	-	rs781757114		P-0057340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	11	47	0	ENST00000425420.2:n.247-4_247-2del		p.X83_splice	ENST00000425420		83																																																																																
CSDE1	7812	MSKCC	GRCh37	1	115269657	115269657	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	123	555	0	ENST00000438362.2:c.1549G>T	p.Ala517Ser	p.A517S	ENST00000438362	NM_001242891.1	517	Gct/Tct																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843682	156843682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1488	198	1069	0	ENST00000524377.1:c.1108G>T	p.Ala370Ser	p.A370S	ENST00000524377	NM_002529.3	370	Gcc/Tcc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117765	115117765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	218	349	0	ENST00000257566.3:c.670C>T	p.Pro224Ser	p.P224S	ENST00000257566	NM_016569.3	224	Cca/Tca																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37864727	37864727	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	151	721	0	ENST00000269571.5:c.379A>C	p.Thr127Pro	p.T127P	ENST00000269571		127	Acc/Ccc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602688	10602688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	446	969	1	ENST00000171111.5:c.890G>A	p.Cys297Tyr	p.C297Y	ENST00000171111	NM_203500.1	297	tGc/tAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129945	55129945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	237	601	0	ENST00000257290.5:c.479C>A	p.Thr160Asn	p.T160N	ENST00000257290	NM_006206.4	160	aCc/aAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161433	55161433	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	203	476	0	ENST00000257290.5:c.3264C>A	p.Phe1088Leu	p.F1088L	ENST00000257290	NM_006206.4	1088	ttC/ttA																																																																															
BRAF	673	MSKCC	GRCh37	7	140439623	140439623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	111	571	0	ENST00000288602.6:c.2116C>G	p.Leu706Val	p.L706V	ENST00000288602	NM_004333.4	706	Ctc/Gtc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148525904	148525904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	68	297	0	ENST00000320356.2:c.553G>T	p.Asp185Tyr	p.D185Y	ENST00000320356	NM_004456.4	185	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577532	7577535	+	frameshift_variant	Frame_Shift_Del	DEL	GGCC	GGCC	-			P-0057341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	234	516	0	ENST00000269305.4:c.746_749del	p.Arg249ThrfsTer95	p.R249Tfs*95	ENST00000269305	NM_001126112.2	249	aGGCCc/ac																																																																															
MSH6	2956	MSKCC	GRCh37	2	48032100	48032100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	79	262	0	ENST00000234420.5:c.3490G>A	p.Val1164Met	p.V1164M	ENST00000234420	NM_000179.2	1164	Gtg/Atg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0057342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	114	551	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680747	88680747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	57	640	0	ENST00000360948.2:c.510G>T	p.Trp170Cys	p.W170C	ENST00000360948	NM_001012338.2	170	tgG/tgT																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0018707-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			57	43	51	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0018707-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			180	162	405	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098816	178098816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018707-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			554	25	279	0	ENST00000397062.3:c.229G>C	p.Asp77His	p.D77H	ENST00000397062	NM_006164.4	77	Gat/Cat																																																																															
IGF2	3481	MSKCC	GRCh37	11	2161458	2161467	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGACTTGC	TTGGACTTGC	-			P-0018707-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			219	47	156	0	ENST00000434045.2:c.60_69del	p.Met20IlefsTer7	p.M20Ifs*7	ENST00000434045	NM_001127598.1	20	atGCAAGTCCAA/at																																																																															
RB1	5925	MSKCC	GRCh37	13	48954199	48954199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018707-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			165	67	104	0	ENST00000267163.4:c.1400G>A	p.Arg467Gln	p.R467Q	ENST00000267163	NM_000321.2	467	cGa/cAa																																																																															
RB1	5925	MSKCC	GRCh37	13	49039158	49039158	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018707-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			124	67	121	2	ENST00000267163.4:c.2236G>T	p.Glu746Ter	p.E746*	ENST00000267163	NM_000321.2	746	Gaa/Taa																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643348	38643348	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs946203764		P-0018707-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			148	20	98	0	ENST00000299084.4:c.818G>C	p.Arg273Thr	p.R273T	ENST00000299084	NM_152594.2	273	aGa/aCa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639653	3639653	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018707-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			174	58	283	0	ENST00000294008.3:c.3986C>G	p.Ser1329Cys	p.S1329C	ENST00000294008	NM_032444.2	1329	tCt/tGt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646348	3646348	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0018707-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			126	40	191	0	ENST00000294008.3:c.1730C>G	p.Ser577Ter	p.S577*	ENST00000294008	NM_032444.2	577	tCa/tGa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31508787	31508787	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370207689		P-0018707-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	47	193	1	ENST00000344624.3:c.1528C>T	p.Arg510Cys	p.R510C	ENST00000344624		510	Cgc/Tgc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139815544	139815544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018707-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			298	79	252	0	ENST00000247668.2:c.1015G>A	p.Glu339Lys	p.E339K	ENST00000247668	NM_021138.3	339	Gag/Aag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118369130	118369130	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018707-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			220	14	168	0	ENST00000534358.1:c.5848C>G	p.Leu1950Val	p.L1950V	ENST00000534358	NM_005933.3	1950	Ctc/Gtc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633462	3633462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018707-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			258	15	263	0	ENST00000294008.3:c.4789G>A	p.Glu1597Lys	p.E1597K	ENST00000294008	NM_032444.2	1597	Gag/Aag																																																																															
ALK	238	MSKCC	GRCh37	2	29456433	29456433	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0018707-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			174	23	161	0	ENST00000389048.3:c.2485A>C	p.Lys829Gln	p.K829Q	ENST00000389048	NM_004304.4	829	Aag/Cag																																																																															
ATR	545	MSKCC	GRCh37	3	142243002	142243002	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018707-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			228	53	115	0	ENST00000350721.4:c.3985G>C	p.Glu1329Gln	p.E1329Q	ENST00000350721	NM_001184.3	1329	Gaa/Caa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0056884-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	90	443	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061469	38061469	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056884-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			377	93	362	0	ENST00000250448.2:c.520T>C	p.Ser174Pro	p.S174P	ENST00000250448	NM_004496.3	174	Tcg/Ccg																																																																															
CDH1	999	MSKCC	GRCh37	16	68846103	68846104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0056884-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	106	646	0	ENST00000261769.5:c.1075_1076dup	p.Thr360GlnfsTer4	p.T360Qfs*4	ENST00000261769	NM_004360.3	358	-/GC																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270478	98270478	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056884-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			375	78	414	0	ENST00000331920.6:c.166T>C	p.Cys56Arg	p.C56R	ENST00000331920	NM_000264.3	56	Tgc/Cgc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50785665	50785665	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056884-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			499	45	480	0	ENST00000398568.2:c.655C>A	p.Pro219Thr	p.P219T	ENST00000398568	NM_001042412.1	219	Cct/Act																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741686	145741704	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGGCTCTCCCAGGGCTC	CGGGGCTCTCCCAGGGCTC	-			P-0056884-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			461	96	631	0	ENST00000428558.2:c.799_817del	p.Glu267HisfsTer20	p.E267Hfs*20	ENST00000428558	NM_004260.3	267	GAGCCCTGGGAGAGCCCCGca/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs587781642		P-0056885-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			116	205	842	0	ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115275368	115275368	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056885-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			112	167	567	0	ENST00000438362.2:c.1045G>C	p.Asp349His	p.D349H	ENST00000438362	NM_001242891.1	349	Gat/Cat																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060529	38060879	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	ACCAGCATGGCTATGCCAGACAAACCCCCCAGTCCCGGGAGCTAGGAAGTGTTTAGGACGGGTCTGGAATACACACCTTGGTAGTACGCCGGCTCCAGGGCTGAGGGCTCGATGGGGCTCCTGGTGGTCACCGAGGCGCTGCCTAGAGGCAGGCTGGCGGGCAACGTAGAGCCGTAAGGCGAGTATTGCAGTGCCTGTTCGTATGCCTTGAAGTCCAGCTTATGCTGCTGCTCCGAGGAGGACATGAGGTTGTTGATGGAGAACGGGTGGTTGAAGGAGTAGTGGGGGTCCCCTTTCAGGTGCAGCTGGGACTCGTGGGGTGCCAAGCCGTGTGCCGGGTGAGAGGCGGGC	ACCAGCATGGCTATGCCAGACAAACCCCCCAGTCCCGGGAGCTAGGAAGTGTTTAGGACGGGTCTGGAATACACACCTTGGTAGTACGCCGGCTCCAGGGCTGAGGGCTCGATGGGGCTCCTGGTGGTCACCGAGGCGCTGCCTAGAGGCAGGCTGGCGGGCAACGTAGAGCCGTAAGGCGAGTATTGCAGTGCCTGTTCGTATGCCTTGAAGTCCAGCTTATGCTGCTGCTCCGAGGAGGACATGAGGTTGTTGATGGAGAACGGGTGGTTGAAGGAGTAGTGGGGGTCCCCTTTCAGGTGCAGCTGGGACTCGTGGGGTGCCAAGCCGTGTGCCGGGTGAGAGGCGGGC	-			P-0056885-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			421	68	639	0	ENST00000250448.2:c.1110_*41del		p.*370*	ENST00000250448	NM_004496.3	370																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0057263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	280	487	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519991		P-0057263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	140	579	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933311	39933311	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	155	665	0	ENST00000378444.4:c.1288C>G	p.Gln430Glu	p.Q430E	ENST00000378444	NM_001123385.1	430	Cag/Gag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0057265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	210	293	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0057265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	190	278	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs876658468		P-0057265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	301	582	0	ENST00000269305.4:c.577C>A	p.His193Asn	p.H193N	ENST00000269305	NM_001126112.2	193	Cat/Aat																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468218	50468218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	262	511	1	ENST00000331340.3:c.1453G>A	p.Gly485Ser	p.G485S	ENST00000331340	NM_006060.4	485	Ggc/Agc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48586235	48586235	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0057265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	111	350	0	ENST00000342988.3:c.905-1G>T		p.X302_splice	ENST00000342988	NM_005359.5	302																																																																																
IDH1	3417	MSKCC	GRCh37	2	209104671	209104671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	92	376	0	ENST00000345146.2:c.907G>A	p.Val303Ile	p.V303I	ENST00000345146	NM_005896.2	303	Gta/Ata																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952117	178952117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	81	302	0	ENST00000263967.3:c.3172A>C	p.Ile1058Leu	p.I1058L	ENST00000263967	NM_006218.2	1058	Atc/Ctc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519972		P-0057289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	160	576	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195644	102195644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	112	424	1	ENST00000263464.3:c.404G>A	p.Arg135His	p.R135H	ENST00000263464	NM_001165.4	135	cGt/cAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440950	56440951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCA			P-0057289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	110	720	0	ENST00000407977.2:c.383_386dup	p.Glu131GlyfsTer2	p.E131Gfs*2	ENST00000407977		129	gcg/gcTGGCg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528637	89528639	+	frameshift_variant	Frame_Shift_Del	DEL	CCC	CCC	AG			P-0057289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	34	225	1	ENST00000336596.2:c.2937_2939delinsAG	p.Pro980GlufsTer22	p.P980Efs*22	ENST00000336596	NM_005233.5	979	ggCCCa/ggAGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0057290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	127	396	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934571		P-0057290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	105	643	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974746	21974753	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCTCTA	CTCCTCTA	GTC			P-0057290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	32	344	1	ENST00000304494.5:c.74_81delinsGAC	p.Val25GlyfsTer17	p.V25Gfs*17	ENST00000304494	NM_000077.4	25	gTAGAGGAG/gGAC																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0057312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	63	289	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16089914	16089914	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	64	303	0	ENST00000268712.3:c.196C>T	p.Arg66Ter	p.R66*	ENST00000268712	NM_006311.3	66	Cga/Tga																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858362	27858362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	56	425	0	ENST00000359303.2:c.209G>A	p.Arg70His	p.R70H	ENST00000359303	NM_003535.2	70	cGc/cAc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732961	30732961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	98	281	0	ENST00000359013.4:c.1649C>T	p.Pro550Leu	p.P550L	ENST00000359013	NM_001024847.2	550	cCa/cTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0057315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	146	273	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0057315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	175	144	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591901	48591901	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	158	361	0	ENST00000342988.3:c.1064A>T	p.Asp355Val	p.D355V	ENST00000342988	NM_005359.5	355	gAc/gTc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5218488	5218488	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1361339357		P-0057315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	277	513	1	ENST00000357368.4:c.3991G>A	p.Ala1331Thr	p.A1331T	ENST00000357368	NM_002850.3	1331	Gcc/Acc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711267	114711268	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0057315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	110	263	0	ENST00000543371.1:c.285dup	p.Lys96Ter	p.K96*	ENST00000543371	NM_001198531.1	94	-/T																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554706	63554707	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0057315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	161	350	0	ENST00000307078.5:c.32dup	p.Asp12GlyfsTer8	p.D12Gfs*8	ENST00000307078	NM_004655.3	11	ccg/ccCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0057316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	164	490	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0057316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	81	208	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0057316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	109	370	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
EP300	2033	MSKCC	GRCh37	22	41566513	41566513	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	139	254	0	ENST00000263253.7:c.4390C>T	p.Gln1464Ter	p.Q1464*	ENST00000263253	NM_001429.3	1464	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0057317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	196	259	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120612003	120612004	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-	rs372504208		P-0057317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	13	11	0	ENST00000256646.2:c.17_18del	p.Pro6ArgfsTer27	p.P6Rfs*27	ENST00000256646	NM_024408.3	6	cCC/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0057317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	547	477	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
CD79A	973	MSKCC	GRCh37	19	42383338	42383338	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782282654		P-0057317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	98	418	1	ENST00000221972.3:c.358G>A	p.Gly120Ser	p.G120S	ENST00000221972	NM_021601.3	120	Ggc/Agc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231124	46231124	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	47	299	0	ENST00000334344.6:c.1044T>A	p.Asp348Glu	p.D348E	ENST00000334344	NM_152641.2	348	gaT/gaA																																																																															
BRCA2	675	MSKCC	GRCh37	13	32931999	32931999	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	185	237	0	ENST00000380152.3:c.7738C>G	p.Gln2580Glu	p.Q2580E	ENST00000380152		2580	Cag/Gag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127363	55127363	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	82	447	0	ENST00000257290.5:c.151G>T	p.Gly51Trp	p.G51W	ENST00000257290	NM_006206.4	51	Ggg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			581	145	802	2	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			551	168	795	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15297921	15297921	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1206256945		P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			851	166	932	0	ENST00000263388.2:c.1835C>T	p.Thr612Ile	p.T612I	ENST00000263388	NM_000435.2	612	aCc/aTc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098894	178098895	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			486	122	619	0	ENST00000397062.3:c.150dup	p.Gln51ThrfsTer5	p.Q51Tfs*5	ENST00000397062	NM_006164.4	50	-/A																																																																															
APC	324	MSKCC	GRCh37	5	112175060	112175060	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			177	56	275	0	ENST00000257430.4:c.3769G>T	p.Glu1257Ter	p.E1257*	ENST00000257430	NM_000038.5	1257	Gaa/Taa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67590403	67590403	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			196	53	242	0	ENST00000274335.5:c.1465G>T	p.Glu489Ter	p.E489*	ENST00000274335		489	Gaa/Taa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717699	89717699	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	131	607	0	ENST00000371953.3:c.724G>T	p.Glu242Ter	p.E242*	ENST00000371953	NM_000314.4	242	Gag/Tag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230813	66230813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			322	69	480	2	ENST00000273854.3:c.2158G>T	p.Asp720Tyr	p.D720Y	ENST00000273854	NM_004439.5	720	Gat/Tat																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944943	31944943	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			503	175	618	0	ENST00000340398.3:c.158G>T	p.Arg53Leu	p.R53L	ENST00000340398	NM_001013699.2	53	cGt/cTt																																																																															
TET1	80312	MSKCC	GRCh37	10	70333960	70333960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			367	110	470	0	ENST00000373644.4:c.1865G>T	p.Arg622Ile	p.R622I	ENST00000373644	NM_030625.2	622	aGa/aTa																																																																															
CRKL	1399	MSKCC	GRCh37	22	21272506	21272506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			751	260	946	0	ENST00000354336.3:c.284C>A	p.Thr95Asn	p.T95N	ENST00000354336	NM_005207.3	95	aCc/aAc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295229	1295229	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	125	224	0				ENST00000310581	NM_198253.2																																																																																	
ARID1A	8289	MSKCC	GRCh37	1	27101309	27101309	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			689	208	914	0	ENST00000324856.7:c.4591G>T	p.Glu1531Ter	p.E1531*	ENST00000324856	NM_006015.4	1531	Gaa/Taa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032064	10032064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			637	193	854	0	ENST00000330684.3:c.759C>A	p.Phe253Leu	p.F253L	ENST00000330684	NM_001134407.1	253	ttC/ttA																																																																															
APC	324	MSKCC	GRCh37	5	112174262	112174262	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs786202995		P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			242	70	474	0	ENST00000257430.4:c.2971G>T	p.Glu991Ter	p.E991*	ENST00000257430	NM_000038.5	991	Gaa/Taa																																																																															
EP300	2033	MSKCC	GRCh37	22	41565580	41565580	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			312	121	509	0	ENST00000263253.7:c.4246G>T	p.Glu1416Ter	p.E1416*	ENST00000263253	NM_001429.3	1416	Gaa/Taa																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40457661	40457661	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1307657759		P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			933	98	828	1	ENST00000345506.4:c.1414G>A	p.Gly472Ser	p.G472S	ENST00000345506	NM_003152.3	472	Ggc/Agc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717715	89717715	+	stop_gained	Nonsense_Mutation	SNP	T	T	G	rs1057519368		P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	170	593	0	ENST00000371953.3:c.740T>G	p.Leu247Ter	p.L247*	ENST00000371953	NM_000314.4	247	tTa/tGa																																																																															
APC	324	MSKCC	GRCh37	5	112174365	112174365	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			172	57	339	0	ENST00000257430.4:c.3074T>G	p.Ile1025Arg	p.I1025R	ENST00000257430	NM_000038.5	1025	aTa/aGa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591303	67591303	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	86	419	0	ENST00000274335.5:c.1801G>T	p.Glu601Ter	p.E601*	ENST00000274335		601	Gaa/Taa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255939	16255939	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			676	196	632	0	ENST00000375759.3:c.3204G>C	p.Glu1068Asp	p.E1068D	ENST00000375759	NM_015001.2	1068	gaG/gaC																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39317428	39317428	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			409	125	662	0	ENST00000373001.3:c.758A>T	p.Asn253Ile	p.N253I	ENST00000373001	NM_022157.3	253	aAt/aTt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115272932	115272932	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			661	189	907	0	ENST00000438362.2:c.1441G>T	p.Glu481Ter	p.E481*	ENST00000438362	NM_001242891.1	481	Gaa/Taa																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166050	118166050	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			469	168	558	0	ENST00000369448.3:c.560T>G	p.Ile187Ser	p.I187S	ENST00000369448	NM_017709.3	187	aTc/aGc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736346	243736346	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			420	132	440	0	ENST00000263826.5:c.701T>G	p.Phe234Cys	p.F234C	ENST00000263826	NM_005465.4	234	tTt/tGt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925322	114925322	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			545	175	666	0	ENST00000543371.1:c.1400A>C	p.Lys467Thr	p.K467T	ENST00000543371	NM_001198531.1	467	aAa/aCa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942179	71942179	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			895	320	956	0	ENST00000298229.2:c.1443G>T	p.Trp481Cys	p.W481C	ENST00000298229	NM_001567.3	481	tgG/tgT																																																																															
SESN3	143686	MSKCC	GRCh37	11	94911976	94911976	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			354	118	636	0	ENST00000536441.1:c.954G>T	p.Met318Ile	p.M318I	ENST00000536441	NM_144665.3	318	atG/atT																																																																															
SESN3	143686	MSKCC	GRCh37	11	94964005	94964005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			169	55	166	0	ENST00000536441.1:c.20G>T	p.Ser7Ile	p.S7I	ENST00000536441	NM_144665.3	7	aGc/aTc																																																																															
PGR	5241	MSKCC	GRCh37	11	100909968	100909968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	67	555	0	ENST00000325455.5:c.2681C>A	p.Thr894Lys	p.T894K	ENST00000325455	NM_001202474.3	894	aCa/aAa																																																																															
YAP1	10413	MSKCC	GRCh37	11	102098222	102098222	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			509	175	578	0	ENST00000282441.5:c.1186G>T	p.Glu396Ter	p.E396*	ENST00000282441	NM_001130145.2	396	Gag/Tag																																																																															
YAP1	10413	MSKCC	GRCh37	11	102100545	102100545	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			573	189	691	0	ENST00000282441.5:c.1389G>T	p.Met463Ile	p.M463I	ENST00000282441	NM_001130145.2	463	atG/atT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374869	118374869	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	78	468	0	ENST00000534358.1:c.8262G>T	p.Glu2754Asp	p.E2754D	ENST00000534358	NM_005933.3	2754	gaG/gaT																																																																															
CBL	867	MSKCC	GRCh37	11	119148948	119148948	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs267606707		P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			459	134	631	0	ENST00000264033.4:c.1168G>T	p.Asp390Tyr	p.D390Y	ENST00000264033	NM_005188.3	390	Gat/Tat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420357	49420357	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			675	232	817	0	ENST00000301067.7:c.15392T>C	p.Met5131Thr	p.M5131T	ENST00000301067	NM_003482.3	5131	aTg/aCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49439908	49439908	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			848	234	788	0	ENST00000301067.7:c.4633C>G	p.Gln1545Glu	p.Q1545E	ENST00000301067	NM_003482.3	1545	Cag/Gag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481626	56481626	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			841	245	840	0	ENST00000267101.3:c.661C>G	p.Pro221Ala	p.P221A	ENST00000267101	NM_001982.3	221	Ccc/Gcc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32915179	32915179	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			520	121	720	0	ENST00000380152.3:c.6687A>C	p.Glu2229Asp	p.E2229D	ENST00000380152		2229	gaA/gaC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32930601	32930601	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs185012573		P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			463	257	484	0	ENST00000380152.3:c.7472A>G	p.Gln2491Arg	p.Q2491R	ENST00000380152		2491	cAg/cGg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972677	32972677	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			404	219	624	0	ENST00000380152.3:c.10027G>T	p.Glu3343Ter	p.E3343*	ENST00000380152		3343	Gaa/Taa																																																																															
MAX	4149	MSKCC	GRCh37	14	65543274	65543274	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs201312694		P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			553	165	640	0	ENST00000358664.4:c.403G>C	p.Asp135His	p.D135H	ENST00000358664	NM_002382.4	135	Gat/Cat																																																																															
DICER1	23405	MSKCC	GRCh37	14	95571424	95571424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			294	89	316	0	ENST00000343455.3:c.3253C>G	p.Leu1085Val	p.L1085V	ENST00000343455	NM_177438.2	1085	Ctt/Gtt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701151	43701151	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			598	205	659	0	ENST00000382044.4:c.5544C>A	p.Tyr1848Ter	p.Y1848*	ENST00000382044	NM_001141980.1	1848	taC/taA																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2645801	2645801	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			618	151	596	0	ENST00000342085.4:c.1351T>C	p.Phe451Leu	p.F451L	ENST00000342085	NM_002613.4	451	Ttt/Ctt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639309	3639309	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			866	289	1068	2	ENST00000294008.3:c.4330G>C	p.Glu1444Gln	p.E1444Q	ENST00000294008	NM_032444.2	1444	Gag/Cag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3794916	3794916	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			513	158	564	0	ENST00000262367.5:c.3961G>T	p.Glu1321Ter	p.E1321*	ENST00000262367	NM_004380.2	1321	Gaa/Taa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819244	3819244	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs766440192		P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			788	235	819	0	ENST00000262367.5:c.2991G>T	p.Met997Ile	p.M997I	ENST00000262367	NM_004380.2	997	atG/atT																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14026093	14026093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			280	101	329	0	ENST00000311895.7:c.1053G>T	p.Met351Ile	p.M351I	ENST00000311895	NM_005236.2	351	atG/atT																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81972504	81972504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			574	183	654	1	ENST00000359376.3:c.3297C>A	p.Phe1099Leu	p.F1099L	ENST00000359376	NM_002661.3	1099	ttC/ttA																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7983569	7983569	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			650	217	629	0	ENST00000319144.4:c.738G>T	p.Lys246Asn	p.K246N	ENST00000319144	NM_001139.2	246	aaG/aaT																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029445	16029445	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			386	113	486	0	ENST00000268712.3:c.1585G>T	p.Glu529Ter	p.E529*	ENST00000268712	NM_006311.3	529	Gaa/Taa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37884223	37884223	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			752	246	832	0	ENST00000269571.5:c.3694G>T	p.Ala1232Ser	p.A1232S	ENST00000269571		1232	Gct/Tct																																																																															
RARA	5914	MSKCC	GRCh37	17	38508294	38508294	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			682	209	724	0	ENST00000254066.5:c.602C>G	p.Ala201Gly	p.A201G	ENST00000254066	NM_000964.3	201	gCc/gGc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40451826	40451826	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			438	176	549	0	ENST00000345506.4:c.608C>G	p.Ala203Gly	p.A203G	ENST00000345506	NM_003152.3	203	gCc/gGc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475124	40475124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758127158		P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			694	146	782	1	ENST00000264657.5:c.1786G>A	p.Ala596Thr	p.A596T	ENST00000264657	NM_139276.2	596	Gcc/Acc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41201202	41201202	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			615	193	727	0	ENST00000357654.3:c.5342A>G	p.Glu1781Gly	p.E1781G	ENST00000357654	NM_007294.3	1781	gAa/gGa																																																																															
CD79B	974	MSKCC	GRCh37	17	62009561	62009561	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			763	268	783	0	ENST00000392795.3:c.61C>G	p.Leu21Val	p.L21V	ENST00000392795	NM_001039933.1	21	Ctc/Gtc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119106	70119106	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			383	110	551	0	ENST00000245479.2:c.678G>C	p.Glu226Asp	p.E226D	ENST00000245479	NM_000346.3	226	gaG/gaC																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39573264	39573264	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1261163931		P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	100	541	0	ENST00000262039.4:c.745A>G	p.Ser249Gly	p.S249G	ENST00000262039	NM_002647.2	249	Agt/Ggt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573583	48573583	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	75	342	0	ENST00000342988.3:c.167C>A	p.Ser56Tyr	p.S56Y	ENST00000342988	NM_005359.5	56	tCt/tAt																																																																															
CARM1	10498	MSKCC	GRCh37	19	11019809	11019809	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			652	222	729	0	ENST00000327064.4:c.484A>G	p.Met162Val	p.M162V	ENST00000327064	NM_199141.1	162	Atg/Gtg																																																																															
ERF	2077	MSKCC	GRCh37	19	42754067	42754067	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			729	217	718	0	ENST00000222329.4:c.285C>G	p.His95Gln	p.H95Q	ENST00000222329	NM_006494.2	95	caC/caG																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867545	45867545	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			931	329	1071	0	ENST00000391945.4:c.763A>C	p.Thr255Pro	p.T255P	ENST00000391945	NM_000400.3	255	Acc/Ccc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909714	50909714	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			612	616	984	0	ENST00000440232.2:c.1434C>G	p.Ser478Arg	p.S478R	ENST00000440232	NM_002691.3	478	agC/agG																																																																															
ALK	238	MSKCC	GRCh37	2	29940547	29940547	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	106	574	0	ENST00000389048.3:c.684A>T	p.Glu228Asp	p.E228D	ENST00000389048	NM_004304.4	228	gaA/gaT																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605158	46605158	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1457723486		P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			613	133	734	1	ENST00000263734.3:c.1375G>A	p.Val459Met	p.V459M	ENST00000263734	NM_001430.4	459	Gtg/Atg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47705613	47705613	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			267	80	450	0	ENST00000233146.2:c.2413C>G	p.Leu805Val	p.L805V	ENST00000233146	NM_000251.2	805	Ctc/Gtc																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873257	136873257	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			419	139	466	0	ENST00000241393.3:c.241T>G	p.Ser81Ala	p.S81A	ENST00000241393	NM_003467.2	81	Tca/Gca																																																																															
CASP8	841	MSKCC	GRCh37	2	202137378	202137378	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			348	92	428	0	ENST00000358485.4:c.606C>A	p.Phe202Leu	p.F202L	ENST00000358485	NM_001080125.1	202	ttC/ttA																																																																															
BARD1	580	MSKCC	GRCh37	2	215645706	215645706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			403	101	684	0	ENST00000260947.4:c.892G>A	p.Val298Met	p.V298M	ENST00000260947	NM_000465.2	298	Gtg/Atg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	30954262	30954262	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			312	96	467	0	ENST00000375687.4:c.133G>T	p.Glu45Ter	p.E45*	ENST00000375687	NM_015338.5	45	Gaa/Taa																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24159103	24159103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			562	178	579	0	ENST00000263121.7:c.775G>C	p.Asp259His	p.D259H	ENST00000263121	NM_003073.3	259	Gac/Cac																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130552	29130552	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs753204096		P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			639	242	744	0	ENST00000328354.6:c.158C>G	p.Ser53Cys	p.S53C	ENST00000328354	NM_007194.3	53	tCt/tGt																																																																															
EP300	2033	MSKCC	GRCh37	22	41562649	41562649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			356	101	452	0	ENST00000263253.7:c.3853G>T	p.Glu1285Ter	p.E1285*	ENST00000263253	NM_001429.3	1285	Gaa/Taa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280784	41280784	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			476	130	549	0	ENST00000349496.5:c.2297T>A	p.Leu766Gln	p.L766Q	ENST00000349496	NM_001904.3	766	cTg/cAg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163110	47163110	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			248	75	463	0	ENST00000409792.3:c.3016A>C	p.Asn1006His	p.N1006H	ENST00000409792	NM_014159.6	1006	Aat/Cat																																																																															
MST1	4485	MSKCC	GRCh37	3	49723755	49723755	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			24	17	40	0	ENST00000449682.2:c.1007A>T	p.Tyr336Phe	p.Y336F	ENST00000449682	NM_020998.3	336	tAc/tTc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940094	49940094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			765	217	935	0	ENST00000296474.3:c.949C>G	p.Pro317Ala	p.P317A	ENST00000296474	NM_002447.2	317	Ccc/Gcc																																																																															
RYBP	23429	MSKCC	GRCh37	3	72428241	72428241	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			458	132	592	0	ENST00000477973.2:c.649A>G	p.Ile217Met	p.I217M	ENST00000477973	NM_012234.5	217	atA/atG																																																																															
ATR	545	MSKCC	GRCh37	3	142281328	142281328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			399	118	659	0	ENST00000350721.4:c.916G>T	p.Glu306Ter	p.E306*	ENST00000350721	NM_001184.3	306	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936037	178936037	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			78	34	130	0	ENST00000263967.3:c.1579G>T	p.Asp527Tyr	p.D527Y	ENST00000263967	NM_006218.2	527	Gac/Tac																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803563	1803563	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			490	139	459	0	ENST00000260795.2:c.741G>C	p.Glu247Asp	p.E247D	ENST00000260795		247	gaG/gaC																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1918635	1918635	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			605	205	573	0	ENST00000382891.5:c.798C>A	p.Phe266Leu	p.F266L	ENST00000382891	NM_133335.3	266	ttC/ttA																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127289	55127289	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			470	134	617	0	ENST00000257290.5:c.77C>A	p.Ser26Ter	p.S26*	ENST00000257290	NM_006206.4	26	tCa/tAa																																																																															
TET2	54790	MSKCC	GRCh37	4	106157624	106157624	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			259	67	358	0	ENST00000380013.4:c.2525C>A	p.Ser842Ter	p.S842*	ENST00000380013	NM_001127208.2	842	tCa/tAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244077	153244077	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			538	154	593	0	ENST00000281708.4:c.2080G>T	p.Glu694Ter	p.E694*	ENST00000281708	NM_033632.3	694	Gaa/Taa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526829	31526829	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			790	224	1002	0	ENST00000344624.3:c.211T>G	p.Phe71Val	p.F71V	ENST00000344624		71	Ttt/Gtt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589307	67589307	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			188	50	323	0	ENST00000274335.5:c.1295A>C	p.Gln432Pro	p.Q432P	ENST00000274335		432	cAa/cCa																																																																															
APC	324	MSKCC	GRCh37	5	112178988	112178988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			282	87	404	0	ENST00000257430.4:c.7697G>T	p.Arg2566Ile	p.R2566I	ENST00000257430	NM_000038.5	2566	aGa/aTa																																																																															
APC	324	MSKCC	GRCh37	5	112179270	112179270	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs775012353		P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			303	76	476	0	ENST00000257430.4:c.7979G>T	p.Arg2660Ile	p.R2660I	ENST00000257430	NM_000038.5	2660	aGa/aTa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176687127	176687127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			526	164	645	0	ENST00000439151.2:c.5104C>A	p.His1702Asn	p.H1702N	ENST00000439151	NM_022455.4	1702	Cat/Aat																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910606	29910607	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			698	270	922	0	ENST00000376809.5:c.149dup	p.Tyr51LeufsTer48	p.Y51Lfs*48	ENST00000376809	NM_002116.7	49	gtg/gtGg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680576	30680576	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			566	164	721	0	ENST00000376406.3:c.1143A>T	p.Glu381Asp	p.E381D	ENST00000376406	NM_014641.2	381	gaA/gaT																																																																															
PIM1	5292	MSKCC	GRCh37	6	37141769	37141769	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			586	209	658	0	ENST00000373509.5:c.844G>T	p.Glu282Ter	p.E282*	ENST00000373509	NM_002648.3	282	Gaa/Taa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196114	138196114	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	134	425	0	ENST00000237289.4:c.428A>G	p.Gln143Arg	p.Q143R	ENST00000237289	NM_001270507.1	143	cAa/cGa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001539	150001539	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	108	568	0	ENST00000253339.5:c.2065G>T	p.Glu689Ter	p.E689*	ENST00000253339		689	Gaa/Taa																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946210	13946210	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			475	143	579	0	ENST00000405192.2:c.886G>C	p.Glu296Gln	p.E296Q	ENST00000405192	NM_001163147.1	296	Gag/Cag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878671	151878671	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			367	108	634	0	ENST00000262189.6:c.6274G>T	p.Asp2092Tyr	p.D2092Y	ENST00000262189	NM_170606.2	2092	Gat/Tat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151880129	151880129	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			397	130	578	1	ENST00000262189.6:c.5195A>T	p.Asp1732Val	p.D1732V	ENST00000262189	NM_170606.2	1732	gAt/gTt																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346229	152346229	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			487	146	676	0	ENST00000359321.1:c.341G>T	p.Arg114Ile	p.R114I	ENST00000359321	NM_005431.1	114	aGa/aTa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271192	38271192	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			525	216	733	0	ENST00000425967.3:c.2516C>A	p.Pro839His	p.P839H	ENST00000425967	NM_001174067.1	839	cCc/cAc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38279318	38279318	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs982371464		P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			786	257	905	0	ENST00000425967.3:c.1171G>A	p.Glu391Lys	p.E391K	ENST00000425967	NM_001174067.1	391	Gaa/Aaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033172	69033172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			487	116	607	0	ENST00000288368.4:c.3612G>T	p.Met1204Ile	p.M1204I	ENST00000288368	NM_024870.2	1204	atG/atT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69136846	69136846	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			455	142	466	0	ENST00000288368.4:c.4760C>G	p.Pro1587Arg	p.P1587R	ENST00000288368	NM_024870.2	1587	cCa/cGa																																																																															
NBN	4683	MSKCC	GRCh37	8	90967767	90967767	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			152	51	218	0	ENST00000265433.3:c.1141C>A	p.Pro381Thr	p.P381T	ENST00000265433	NM_002485.4	381	Cca/Aca																																																																															
AGO2	27161	MSKCC	GRCh37	8	141570479	141570479	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			673	204	724	0	ENST00000220592.5:c.649A>G	p.Ile217Val	p.I217V	ENST00000220592	NM_012154.3	217	Att/Gtt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970964	21970964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			727	232	729	2	ENST00000304494.5:c.394G>T	p.Ala132Ser	p.A132S	ENST00000304494	NM_000077.4	132	Gcg/Tcg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250378	110250378	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs767551221		P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			718	255	1054	1	ENST00000374672.4:c.297C>A	p.Phe99Leu	p.F99L	ENST00000374672	NM_004235.4	99	ttC/ttA																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128432114	128432114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			444	131	500	0	ENST00000265960.3:c.332G>T	p.Arg111Ile	p.R111I	ENST00000265960	NM_001006617.1	111	aGa/aTa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135779122	135779122	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1328198866		P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			568	177	530	0	ENST00000298552.3:c.2124G>C	p.Lys708Asn	p.K708N	ENST00000298552	NM_001162426.1	708	aaG/aaC																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417622	139417622	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	333	964	0	ENST00000277541.6:c.422C>G	p.Ala141Gly	p.A141G	ENST00000277541	NM_017617.3	141	gCt/gGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	208	199	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	292	173	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	50	100	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	265	418	2	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221161	5221161	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs575201235		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	284	281	0	ENST00000357368.4:c.3305G>A	p.Arg1102His	p.R1102H	ENST00000357368	NM_002850.3	1102	cGc/cAc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662691	117662691	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368206665		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	130	197	0	ENST00000368508.3:c.4774C>T	p.Arg1592Cys	p.R1592C	ENST00000368508	NM_002944.2	1592	Cgt/Tgt																																																																															
CIC	23152	MSKCC	GRCh37	19	42799098	42799098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	218	244	0	ENST00000575354.2:c.4586del	p.Pro1529LeufsTer91	p.P1529Lfs*91	ENST00000575354	NM_015125.3	1528	Ccc/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	337	390	0	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	169	190	1	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699208	117699208	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	44	270	0	ENST00000369458.3:c.433T>C	p.Tyr145His	p.Y145H	ENST00000369458	NM_024626.3	145	Tat/Cat																																																																															
RAF1	5894	MSKCC	GRCh37	3	12629134	12629134	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	48	198	0	ENST00000251849.4:c.1373A>T	p.Tyr458Phe	p.Y458F	ENST00000251849	NM_002880.3	458	tAt/tTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162957	47162957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	131	218	0	ENST00000409792.3:c.3169G>A	p.Asp1057Asn	p.D1057N	ENST00000409792	NM_014159.6	1057	Gat/Aat																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200152	128200152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	95	147	0	ENST00000341105.2:c.1153C>T	p.Pro385Ser	p.P385S	ENST00000341105	NM_032638.4	385	Cca/Tca																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522504	67522504	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	50	87	0	ENST00000274335.5:c.1A>G	p.Met1?	p.M1?	ENST00000274335		1	Atg/Gtg																																																																															
APC	324	MSKCC	GRCh37	5	112137022	112137022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767457050		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	52	186	0	ENST00000257430.4:c.776G>A	p.Arg259Gln	p.R259Q	ENST00000257430	NM_000038.5	259	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112177085	112177085	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	61	306	0	ENST00000257430.4:c.5794A>G	p.Thr1932Ala	p.T1932A	ENST00000257430	NM_000038.5	1932	Act/Gct																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100003	157100003	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	29	117	0	ENST00000346085.5:c.940G>C	p.Gly314Arg	p.G314R	ENST00000346085	NM_020732.3	314	Ggc/Cgc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157488299	157488299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	128	93	0	ENST00000346085.5:c.3005C>T	p.Ala1002Val	p.A1002V	ENST00000346085	NM_020732.3	1002	gCc/gTc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737070	145737070	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779410033		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	211	339	1	ENST00000428558.2:c.3496G>A	p.Gly1166Ser	p.G1166S	ENST00000428558	NM_004260.3	1166	Ggc/Agc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145743006	145743006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	178	150	0	ENST00000428558.2:c.98C>T	p.Ala33Val	p.A33V	ENST00000428558	NM_004260.3	33	gCg/gTg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020733	37020733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	291	251	0	ENST00000358127.4:c.112C>T	p.Arg38Cys	p.R38C	ENST00000358127	NM_001280556.1	38	Cgc/Tgc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900252	101900252	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	91	182	0	ENST00000374994.4:c.686T>A	p.Val229Asp	p.V229D	ENST00000374994	NM_004612.2	229	gTt/gAt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375222	118375222	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	146	186	0	ENST00000534358.1:c.8615C>G	p.Ser2872Ter	p.S2872*	ENST00000534358	NM_005933.3	2872	tCa/tGa																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944743	31944743	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	31	41	0	ENST00000340398.3:c.358A>G	p.Met120Val	p.M120V	ENST00000340398	NM_001013699.2	120	Atg/Gtg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49439877	49439877	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1210295814		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1226	112	362	0	ENST00000301067.7:c.4664C>T	p.Ser1555Phe	p.S1555F	ENST00000301067	NM_003482.3	1555	tCc/tTc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877407	28877407	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759739030		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	52	142	0	ENST00000282397.4:c.3914G>A	p.Arg1305His	p.R1305H	ENST00000282397	NM_002019.4	1305	cGc/cAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912064	32912064	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	193	443	0	ENST00000380152.3:c.3572A>T	p.Lys1191Met	p.K1191M	ENST00000380152		1191	aAg/aTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32930633	32930633	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55716624		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	140	172	0	ENST00000380152.3:c.7504C>T	p.Arg2502Cys	p.R2502C	ENST00000380152		2502	Cgc/Tgc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778116	3778116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761751428		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	318	338	0	ENST00000262367.5:c.6932C>T	p.Pro2311Leu	p.P2311L	ENST00000262367	NM_004380.2	2311	cCg/cTg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041518	14041518	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149364215		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	176	150	0	ENST00000311895.7:c.2065C>T	p.Arg689Cys	p.R689C	ENST00000311895	NM_005236.2	689	Cgt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828582	72828582	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1496	262	492	0	ENST00000268489.5:c.7999A>G	p.Thr2667Ala	p.T2667A	ENST00000268489	NM_006885.3	2667	Act/Gct																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944283	81944283	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1695	99	414	0	ENST00000359376.3:c.1892T>G	p.Leu631Arg	p.L631R	ENST00000359376	NM_002661.3	631	cTc/cGc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688712	47688712	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	267	274	0	ENST00000347630.2:c.588T>G	p.Asn196Lys	p.N196K	ENST00000347630	NM_001007230.1	196	aaT/aaG																																																																															
STK11	6794	MSKCC	GRCh37	19	1221331	1221331	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	171	380	0	ENST00000326873.7:c.854T>G	p.Leu285Arg	p.L285R	ENST00000326873	NM_000455.4	285	cTg/cGg																																																																															
INSR	3643	MSKCC	GRCh37	19	7184465	7184465	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1329693158		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	330	272	0	ENST00000302850.5:c.836G>A	p.Arg279His	p.R279H	ENST00000302850	NM_000208.2	279	cGc/cAc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19258583	19258583	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1434	104	499	0	ENST00000162023.5:c.317C>A	p.Pro106His	p.P106H	ENST00000162023		106	cCt/cAt																																																																															
TOP1	7150	MSKCC	GRCh37	20	39741483	39741483	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	122	175	0	ENST00000361337.2:c.1370T>C	p.Ile457Thr	p.I457T	ENST00000361337	NM_003286.2	457	aTc/aCc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076915	41076915	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	245	197	0	ENST00000373198.4:c.1505T>C	p.Ile502Thr	p.I502T	ENST00000373198	NM_133170.3	502	aTc/aCc																																																																															
NF2	4771	MSKCC	GRCh37	22	30070890	30070890	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1077	116	296	0	ENST00000338641.4:c.1406A>G	p.Lys469Arg	p.K469R	ENST00000338641	NM_000268.3	469	aAg/aGg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933022	39933022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778509267		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	608	382	0	ENST00000378444.4:c.1577C>T	p.Ser526Leu	p.S526L	ENST00000378444	NM_001123385.1	526	tCg/tTg																																																																															
AR	367	MSKCC	GRCh37	X	66765403	66765403	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1264061748		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1294	82	315	2	ENST00000374690.3:c.415G>A	p.Val139Met	p.V139M	ENST00000374690	NM_000044.3	139	Gtg/Atg																																																																															
AR	367	MSKCC	GRCh37	X	66765826	66765826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1646	111	426	3	ENST00000374690.3:c.838C>T	p.Arg280Cys	p.R280C	ENST00000374690	NM_000044.3	280	Cgt/Tgt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17954643	17954643	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	295	321	0	ENST00000458235.1:c.251del	p.Pro84ArgfsTer63	p.P84Rfs*63	ENST00000458235	NM_000215.3	84	cCg/cg																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003784	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	391	237	0	ENST00000558401.1:c.41_44del	p.Ser14PhefsTer29	p.S14Ffs*29	ENST00000558401	NM_004048.2	13	CTCTct/ct																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881668	111881669	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	199	265	0	ENST00000393256.3:c.350dup	p.Ser118LysfsTer21	p.S118Kfs*21	ENST00000393256	NM_006538.4	116	acc/aCcc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37081785	37081786	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	GG	GG	-			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	184	147	0	ENST00000231790.2:c.1667_1667+1del		p.X556_splice	ENST00000231790	NM_000249.3	556																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56178258	56178258	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	302	239	0	ENST00000399503.3:c.3236del	p.Asn1079IlefsTer3	p.N1079Ifs*3	ENST00000399503	NM_005921.1	1077	tcA/tc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805045	89805046	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs1030509993		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	309	302	0	ENST00000389301.3:c.4331_4332del	p.Pro1444ArgfsTer3	p.P1444Rfs*3	ENST00000389301	NM_000135.2	1444	cCT/c																																																																															
ALK	238	MSKCC	GRCh37	2	29443612	29443612	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	178	251	0	ENST00000389048.3:c.3605del	p.Gly1202GlufsTer56	p.G1202Efs*56	ENST00000389048	NM_004304.4	1202	gGa/ga																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222233	2222235	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1200	363	635	0	ENST00000326181.6:c.521_523del	p.Asn174del	p.N174del	ENST00000326181	NM_032271.2	173	AAC/-																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742041	145742041	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	312	284	0	ENST00000428558.2:c.462del	p.Val155SerfsTer25	p.V155Sfs*25	ENST00000428558	NM_004260.3	154	aaA/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0012873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			100	203	607	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636974	176636974	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138405802		P-0012873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			487	102	511	0	ENST00000439151.2:c.1574G>A	p.Arg525Gln	p.R525Q	ENST00000439151	NM_022455.4	525	cGg/cAg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937845	36937845	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748394788		P-0012873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			403	120	845	1	ENST00000361632.4:c.991G>A	p.Glu331Lys	p.E331K	ENST00000361632		331	Gaa/Aaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197847	66197847	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0012873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			152	41	180	0	ENST00000273854.3:c.2853-1G>C		p.X951_splice	ENST00000273854	NM_004439.5	951																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	348	612	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68772311	68772311	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0014718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	152	310	300	ENST00000261769.5:c.160A>T	p.Arg54Ter	p.R54*	ENST00000261769	NM_004360.3	54	Aga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023461	27023462	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	187	516	0	ENST00000324856.7:c.572dup	p.Leu192ProfsTer208	p.L192Pfs*208	ENST00000324856	NM_006015.4	189	-/G																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653851	89653851	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	203	378	0	ENST00000371953.3:c.149T>C	p.Ile50Thr	p.I50T	ENST00000371953	NM_000314.4	50	aTt/aCt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15965417	15965417	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0014718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	126	239	0	ENST00000268712.3:c.5387+2T>G		p.X1796_splice	ENST00000268712	NM_006311.3	1796																																																																																
SF3B1	23451	MSKCC	GRCh37	2	198265086	198265086	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	224	402	0	ENST00000335508.6:c.2791C>G	p.Gln931Glu	p.Q931E	ENST00000335508	NM_012433.2	931	Cag/Gag																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231787	36231787	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	245	628	0	ENST00000300305.3:c.597del	p.Arg201GlufsTer10	p.R201Efs*10	ENST00000300305		199	ggG/gg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923781	39923781	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	306	746	0	ENST00000378444.4:c.3310A>T	p.Lys1104Ter	p.K1104*	ENST00000378444	NM_001123385.1	1104	Aag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs757274881		P-0041229-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			859	269	831	0	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66525088	66525088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041229-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			517	101	284	0	ENST00000358598.2:c.847G>A	p.Val283Met	p.V283M	ENST00000358598	NM_212471.2	283	Gtg/Atg																																																																															
CRKL	1399	MSKCC	GRCh37	22	21272493	21272493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041229-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	237	754	0	ENST00000354336.3:c.271C>A	p.His91Asn	p.H91N	ENST00000354336	NM_005207.3	91	Cac/Aac																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1952817	1952817	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041229-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			583	160	487	0	ENST00000382891.5:c.1900G>C	p.Asp634His	p.D634H	ENST00000382891	NM_133335.3	634	Gac/Cac																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707831	176707831	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041229-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			293	91	264	0	ENST00000439151.2:c.5888A>T	p.Lys1963Ile	p.K1963I	ENST00000439151	NM_022455.4	1963	aAa/aTa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2983947	2983947	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs747351557		P-0041229-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1382	215	804	0	ENST00000396946.4:c.583G>C	p.Val195Leu	p.V195L	ENST00000396946	NM_032415.4	195	Gtc/Ctc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974740	21974741	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0041229-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			455	114	397	0	ENST00000304494.5:c.86_87delinsCT	p.Arg29Pro	p.R29P	ENST00000304494	NM_000077.4	29	cGG/cCT																																																																															
RB1	5925	MSKCC	GRCh37	13	48881426	48881426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044960-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			10	240	107	0	ENST00000267163.4:c.148G>T	p.Glu50Ter	p.E50*	ENST00000267163	NM_000321.2	50	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934874		P-0044960-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			7	186	1065	1	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40456631	40456631	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044960-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			292	16	674	0	ENST00000345506.4:c.1341G>C	p.Gln447His	p.Q447H	ENST00000345506	NM_003152.3	447	caG/caC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0044960-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			178	170	590	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139736	55139736	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044960-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			132	232	487	0	ENST00000257290.5:c.1398del	p.Asn467ThrfsTer22	p.N467Tfs*22	ENST00000257290	NM_006206.4	466	gCc/gc																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84406150	84406150	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs955473473		P-0044960-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			296	114	578	0	ENST00000321945.7:c.76G>T	p.Asp26Tyr	p.D26Y	ENST00000321945	NM_139076.2	26	Gac/Tac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0044960-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			119	254	346	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0045481-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			427	60	376	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581201	48581201	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045481-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			417	38	353	1	ENST00000342988.3:c.505C>T	p.Gln169Ter	p.Q169*	ENST00000342988	NM_005359.5	169	Cag/Tag																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17387324	17387324	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374131612		P-0045481-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			825	73	706	1	ENST00000359435.4:c.590C>T	p.Pro197Leu	p.P197L	ENST00000359435	NM_001033549.1	197	cCg/cTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41568663	41568663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045481-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			373	20	229	0	ENST00000263253.7:c.4613C>T	p.Thr1538Ile	p.T1538I	ENST00000263253	NM_001429.3	1538	aCa/aTa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163182	47163182	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045481-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			387	31	296	0	ENST00000409792.3:c.2944G>C	p.Asp982His	p.D982H	ENST00000409792	NM_014159.6	982	Gat/Cat																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93964491	93964491	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045481-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			520	39	495	0	ENST00000369303.4:c.2406G>C	p.Trp802Cys	p.W802C	ENST00000369303	NM_004440.3	802	tgG/tgC																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949031	44949031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045481-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			248	56	203	0	ENST00000377967.4:c.3592G>A	p.Glu1198Lys	p.E1198K	ENST00000377967	NM_021140.2	1198	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0047501-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			405	49	298	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578224	7578224	+	stop_gained	Nonsense_Mutation	SNP	T	T	A	rs1429743956		P-0047501-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			767	96	674	1	ENST00000269305.4:c.625A>T	p.Arg209Ter	p.R209*	ENST00000269305	NM_001126112.2	209	Aga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416114	49416114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048166-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			711	87	623	0	ENST00000301067.7:c.16361G>A	p.Arg5454Gln	p.R5454Q	ENST00000301067	NM_003482.3	5454	cGa/cAa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73340149	73340149	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048166-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			396	21	319	0	ENST00000377767.4:c.1931A>G	p.Glu644Gly	p.E644G	ENST00000377767	NM_014953.3	644	gAa/gGa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048166-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			538	49	576	4	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346190	89346190	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1003478010		P-0048166-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			367	29	405	0	ENST00000301030.4:c.6760G>A	p.Gly2254Arg	p.G2254R	ENST00000301030	NM_001256183.1	2254	Gga/Aga																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25991704	25991704	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048166-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			551	61	460	0	ENST00000435504.4:c.538C>T	p.Gln180Ter	p.Q180*	ENST00000435504		180	Cag/Tag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710725	117710725	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048166-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			358	27	394	0	ENST00000368508.3:c.1547T>C	p.Val516Ala	p.V516A	ENST00000368508	NM_002944.2	516	gTc/gCc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945510	151945510	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048166-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			910	113	842	0	ENST00000262189.6:c.2009del	p.Leu670Ter	p.L670*	ENST00000262189	NM_170606.2	670	tTa/ta																																																																															
MED12	9968	MSKCC	GRCh37	X	70351422	70351422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048166-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			425	81	407	0	ENST00000374080.3:c.4070G>A	p.Arg1357His	p.R1357H	ENST00000374080		1357	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048572-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			416	112	578	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0048572-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			525	269	825	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0048572-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			594	432	622	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0048572-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			582	354	597	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193121508	193121508	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0048572-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			218	204	241	0	ENST00000367435.3:c.908-2A>G		p.X303_splice	ENST00000367435	NM_024529.4	303																																																																																
SMYD3	64754	MSKCC	GRCh37	1	246091253	246091253	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048572-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			744	140	432	0	ENST00000388985.4:c.682G>C	p.Asp228His	p.D228H	ENST00000388985		228	Gac/Cac																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30315507	30315507	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048572-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	107	370	0	ENST00000322652.5:c.1192C>G	p.Gln398Glu	p.Q398E	ENST00000322652	NM_015355.2	398	Caa/Gaa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226345	2226345	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048572-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	226	991	0	ENST00000398665.3:c.3826del	p.Arg1276GlyfsTer51	p.R1276Gfs*51	ENST00000398665	NM_032482.2	1275	ttC/tt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033433	48033433	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048572-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	115	398	0	ENST00000234420.5:c.3737del	p.Ser1246Ter	p.S1246*	ENST00000234420	NM_000179.2	1246	tCa/ta																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440864	52440873	+	frameshift_variant	Frame_Shift_Del	DEL	TACGCTCCAT	TACGCTCCAT	-			P-0048572-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			579	199	708	0	ENST00000460680.1:c.631_640del	p.Met211SerfsTer17	p.M211Sfs*17	ENST00000460680	NM_004656.3	211	ATGGAGCGTAtc/tc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123217310	123217311	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048572-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			185	146	276	0	ENST00000218089.9:c.2968dup	p.Glu990GlyfsTer12	p.E990Gfs*12	ENST00000218089	NM_001042749.1	988	-/G																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0052448-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	144	397	7	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0052448-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			528	171	564	16	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057937	27057937	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052448-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			703	164	577	19	ENST00000324856.7:c.1650del	p.Tyr551ThrfsTer68	p.Y551Tfs*68	ENST00000324856	NM_006015.4	549	Ccc/cc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0052448-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			644	124	615	8	ENST00000346208.3:c.1221_1222del	p.Pro408LeufsTer98	p.P408Lfs*98	ENST00000346208		407	tCG/t																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151846108	151846108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052448-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			405	128	430	7	ENST00000262189.6:c.12904C>T	p.Pro4302Ser	p.P4302S	ENST00000262189	NM_170606.2	4302	Cct/Tct																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0055820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	19	454	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627215	37627215	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0055820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	45	550	0	ENST00000447079.4:c.1130C>A	p.Ser377Ter	p.S377*	ENST00000447079	NM_015083.1	377	tCa/tAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216652	36216652	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1205441044		P-0056213-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			666	133	734	0	ENST00000222270.7:c.3818A>G	p.His1273Arg	p.H1273R	ENST00000222270	NM_014727.1	1273	cAt/cGt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509128	66509128	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1439062174		P-0056213-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			227	24	284	0	ENST00000273854.3:c.199C>T	p.Arg67Cys	p.R67C	ENST00000273854	NM_004439.5	67	Cgc/Tgc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998841	100998844	+	frameshift_variant	Frame_Shift_Del	DEL	GAGT	GAGT	-			P-0056213-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	120	806	0	ENST00000325455.5:c.958_961del	p.Thr320GlyfsTer35	p.T320Gfs*35	ENST00000325455	NM_001202474.3	320	ACTCgg/gg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637686	52637696	+	frameshift_variant	Frame_Shift_Del	DEL	TCACGAATTTT	TCACGAATTTT	-			P-0056213-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	64	388	0	ENST00000394830.3:c.2620_2630del	p.Lys874Ter	p.K874*	ENST00000394830	NM_018313.4	874	AAAATTCGTGAt/t																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0056250-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			218	54	369	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0056250-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			221	47	771	1	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372184	55372184	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs915105324		P-0056250-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			281	23	553	0	ENST00000297316.4:c.874G>A	p.Ala292Thr	p.A292T	ENST00000297316	NM_022454.3	292	Gcc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100324	27100325	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0056250-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			324	69	756	0	ENST00000324856.7:c.4038dup	p.Gly1347ArgfsTer98	p.G1347Rfs*98	ENST00000324856	NM_006015.4	1346	caa/cAaa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0056415-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			182	125	410	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
ATM	472	MSKCC	GRCh37	11	108143272	108143272	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056415-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			78	92	340	0	ENST00000278616.4:c.3091G>T	p.Glu1031Ter	p.E1031*	ENST00000278616	NM_000051.3	1031	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420204	49420205	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0056415-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			272	82	650	0	ENST00000301067.7:c.15544_15545insT	p.Gly5182ValfsTer17	p.G5182Vfs*17	ENST00000301067	NM_003482.3	5182	ggc/gTgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440403	49440403	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056415-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	90	814	0	ENST00000301067.7:c.4407G>A	p.Trp1469Ter	p.W1469*	ENST00000301067	NM_003482.3	1469	tgG/tgA																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557636	21557636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056415-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			252	65	729	0	ENST00000382592.4:c.2209G>A	p.Asp737Asn	p.D737N	ENST00000382592	NM_014572.2	737	Gac/Aac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32890605	32890605	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0056415-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			144	38	328	0	ENST00000380152.3:c.8T>A	p.Ile3Asn	p.I3N	ENST00000380152		3	aTt/aAt																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458647	12458647	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0056415-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			191	58	403	0	ENST00000287820.6:c.1264A>T	p.Ser422Cys	p.S422C	ENST00000287820	NM_015869.4	422	Agt/Tgt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880891	134880891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056415-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			304	65	612	0	ENST00000398015.3:c.1454G>T	p.Arg485Met	p.R485M	ENST00000398015	NM_004441.4	485	aGg/aTg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188869	32188869	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs141236527		P-0056415-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			206	158	784	1	ENST00000375023.3:c.685C>A	p.Pro229Thr	p.P229T	ENST00000375023	NM_004557.3	229	Cca/Aca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518423	8518423	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056415-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			122	65	274	0	ENST00000356435.5:c.968C>G	p.Pro323Arg	p.P323R	ENST00000356435		323	cCc/cGc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056463-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			113	224	603	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0056463-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			151	85	331	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25457242	25457242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147001633		P-0056463-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	242	665	4	ENST00000264709.3:c.2645G>A	p.Arg882His	p.R882H	ENST00000264709	NM_175629.2	882	cGc/cAc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702340	47702340	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056463-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			168	105	393	0	ENST00000233146.2:c.1936G>T	p.Asp646Tyr	p.D646Y	ENST00000233146	NM_000251.2	646	Gat/Tat																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350570	89350572	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0056463-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			333	169	676	0	ENST00000301030.4:c.2378_2380del	p.Lys793del	p.K793del	ENST00000301030	NM_001256183.1	793	aAGAtt/att																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411929	63411929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056463-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			272	220	943	0	ENST00000330258.3:c.1238C>G	p.Ala413Gly	p.A413G	ENST00000330258	NM_152424.3	413	gCc/gGc																																																																															
ATRX	546	MSKCC	GRCh37	X	76937270	76937270	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs868928195		P-0056463-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			151	91	459	0	ENST00000373344.5:c.3478G>C	p.Glu1160Gln	p.E1160Q	ENST00000373344	NM_000489.3	1160	Gaa/Caa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0056671-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			755	125	651	0	ENST00000346208.3:c.1003dup	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0056671-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			552	97	455	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023637	27023638	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTCCAAGCCGC			P-0056671-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			174	21	207	0	ENST00000324856.7:c.748_758dup	p.Ser255ArgfsTer112	p.S255Rfs*112	ENST00000324856	NM_006015.4	248	ggc/ggCTCCAAGCCGCc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866662	37866662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	8	895	1	ENST00000269571.5:c.829G>T	p.Asp277Tyr	p.D277Y	ENST00000269571		277	Gac/Tac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061214	38061216	+	inframe_deletion	In_Frame_Del	DEL	AGC	AGC	-			P-0056701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	8	685	0	ENST00000250448.2:c.773_775del	p.Cys258del	p.C258del	ENST00000250448	NM_004496.3	258	tGCTac/tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0056784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	104	339	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040905	47040905	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0056784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	157	394	0	ENST00000329236.7:c.1202-1G>A		p.X401_splice	ENST00000329236	NM_001204466.1	401																																																																																
GLI1	2735	MSKCC	GRCh37	12	57864733	57864733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	76	735	1	ENST00000228682.2:c.2210G>T	p.Gly737Val	p.G737V	ENST00000228682	NM_005269.2	737	gGg/gTg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610075	81610075	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0056784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	78	413	0	ENST00000298171.2:c.1673T>A	p.Val558Glu	p.V558E	ENST00000298171	NM_000369.2	558	gTg/gAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349802	89349802	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	104	874	0	ENST00000301030.4:c.3148A>G	p.Lys1050Glu	p.K1050E	ENST00000301030	NM_001256183.1	1050	Aaa/Gaa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621169	1621169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	186	785	1	ENST00000344749.5:c.977G>A	p.Gly326Asp	p.G326D	ENST00000344749	NM_001136139.2	326	gGc/gAc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928878	49928878	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	88	874	0	ENST00000296474.3:c.3488A>G	p.Tyr1163Cys	p.Y1163C	ENST00000296474	NM_002447.2	1163	tAt/tGt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156540	55156540	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	124	474	0	ENST00000257290.5:c.2941C>A	p.Arg981Ser	p.R981S	ENST00000257290	NM_006206.4	981	Cgt/Agt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273056	55273056	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	90	533	0	ENST00000275493.2:c.3379G>C	p.Asp1127His	p.D1127H	ENST00000275493	NM_005228.3	1127	Gac/Cac																																																																															
AR	367	MSKCC	GRCh37	X	66766195	66766195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	90	239	0	ENST00000374690.3:c.1207G>T	p.Ala403Ser	p.A403S	ENST00000374690	NM_000044.3	403	Gcg/Tcg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23640589	23640590	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0056786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	158	450	0	ENST00000261584.4:c.2521dup	p.Thr841AsnfsTer8	p.T841Nfs*8	ENST00000261584	NM_024675.3	841	aca/aAca																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40375400	40375400	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0056786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	315	533	0	ENST00000293328.3:c.550G>T	p.Ala184Ser	p.A184S	ENST00000293328	NM_012448.3	184	Gct/Tct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCATGGA			P-0056786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	306	613	0	ENST00000275493.2:c.2304_2305insATGGACAGC	p.Ser768_Val769insMetAspSer	p.S768_V769insMDS	ENST00000275493	NM_005228.3	767	gcc/gcCAGCATGGAc																																																																															
HGF	3082	MSKCC	GRCh37	7	81339531	81339531	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0056786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	159	455	0	ENST00000222390.5:c.1473A>T	p.Lys491Asn	p.K491N	ENST00000222390	NM_000601.4	491	aaA/aaT																																																																															
ATR	545	MSKCC	GRCh37	3	142232376	142232376	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	AACAT			P-0056786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	114	347	0	ENST00000350721.4:c.4608delinsATGTT	p.Leu1537CysfsTer6	p.L1537Cfs*6	ENST00000350721	NM_001184.3	1536	gtC/gtATGTT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0056788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	31	554	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579310	7579310	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0056788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	28	470	0	ENST00000269305.4:c.375+2T>G		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
DNMT1	1786	MSKCC	GRCh37	19	10262201	10262201	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056791-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			690	240	589	1	ENST00000340748.4:c.2090A>G	p.Lys697Arg	p.K697R	ENST00000340748		697	aAg/aGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0056793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1174	124	907	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0056798-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	303	381	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0056798-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			555	87	857	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63845588	63845588	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774238244		P-0056798-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			246	51	257	0	ENST00000279873.7:c.1327C>T	p.Arg443Cys	p.R443C	ENST00000279873	NM_032199.2	443	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0056801-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			439	93	689	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0056801-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			256	46	348	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0056801-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	71	404	0	ENST00000342988.3:c.1572G>A	p.Trp524Ter	p.W524*	ENST00000342988	NM_005359.5	524	tgG/tgA																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244214	153244214	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056801-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			363	39	445	0	ENST00000281708.4:c.1943T>C	p.Leu648Pro	p.L648P	ENST00000281708	NM_033632.3	648	cTa/cCa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970969	21970969	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056801-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			458	78	761	0	ENST00000304494.5:c.389del	p.Leu130ArgfsTer16	p.L130Rfs*16	ENST00000304494	NM_000077.4	130	cTg/cg																																																																															
B2M	567	MSKCC	GRCh37	15	45007635	45007635	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			439	47	287	1	ENST00000558401.1:c.82C>T	p.Gln28Ter	p.Q28*	ENST00000558401	NM_004048.2	28	Cag/Tag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs121913370		P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			408	79	236	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912660		P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			697	580	740	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			738	64	455	0	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520327	176520327	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs762709356		P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			772	116	676	2	ENST00000292408.4:c.1246C>T	p.Arg416Ter	p.R416*	ENST00000292408	NM_213647.1	416	Cga/Tga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164591	47164591	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			405	104	296	0	ENST00000409792.3:c.1535C>G	p.Ser512Ter	p.S512*	ENST00000409792	NM_014159.6	512	tCa/tGa																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945263	54945263	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			645	79	359	0	ENST00000312783.6:c.1163C>G	p.Ser388Ter	p.S388*	ENST00000312783	NM_198436.1	388	tCa/tGa																																																																															
B2M	567	MSKCC	GRCh37	15	45007768	45007768	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			588	120	387	0	ENST00000558401.1:c.215C>G	p.Ser72Ter	p.S72*	ENST00000558401	NM_004048.2	72	tCa/tGa																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792825	33792825	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755311871		P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	76	264	0	ENST00000498907.2:c.496G>A	p.Glu166Lys	p.E166K	ENST00000498907	NM_004364.3	166	Gag/Aag																																																																															
CCND1	595	MSKCC	GRCh37	11	69466006	69466006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	186	918	1	ENST00000227507.2:c.844G>A	p.Asp282Asn	p.D282N	ENST00000227507	NM_053056.2	282	Gac/Aac																																																																															
SDHA	6389	MSKCC	GRCh37	5	228399	228399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			854	103	448	0	ENST00000264932.6:c.721G>A	p.Asp241Asn	p.D241N	ENST00000264932	NM_004168.2	241	Gac/Aac																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871836	12871836	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			556	89	289	0	ENST00000228872.4:c.553G>C	p.Glu185Gln	p.E185Q	ENST00000228872	NM_004064.3	185	Gag/Cag																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38962592	38962592	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			755	127	361	0	ENST00000357387.3:c.1663C>G	p.Leu555Val	p.L555V	ENST00000357387	NM_152756.3	555	Ctt/Gtt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913823	32913823	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			395	311	374	0	ENST00000380152.3:c.5331G>C	p.Lys1777Asn	p.K1777N	ENST00000380152		1777	aaG/aaC																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026622	6026622	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1219	208	925	0	ENST00000265849.7:c.1774C>G	p.Gln592Glu	p.Q592E	ENST00000265849	NM_000535.5	592	Caa/Gaa																																																																															
CUL3	8452	MSKCC	GRCh37	2	225422465	225422465	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			596	395	435	0	ENST00000264414.4:c.175A>G	p.Arg59Gly	p.R59G	ENST00000264414	NM_003590.4	59	Aga/Gga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	402045	402045	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			588	138	487	0	ENST00000399788.2:c.4746G>C	p.Lys1582Asn	p.K1582N	ENST00000399788	NM_001042603.1	1582	aaG/aaC																																																																															
MSI1	4440	MSKCC	GRCh37	12	120805869	120805869	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1283	196	875	1	ENST00000257552.2:c.209A>T	p.Asp70Val	p.D70V	ENST00000257552	NM_002442.3	70	gAc/gTc																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2090220	2090220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	196	869	0	ENST00000219066.1:c.729C>A	p.His243Gln	p.H243Q	ENST00000219066	NM_002528.5	243	caC/caA																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351506	89351506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			881	184	777	1	ENST00000301030.4:c.1444G>A	p.Glu482Lys	p.E482K	ENST00000301030	NM_001256183.1	482	Gag/Aag																																																																															
GNA11	2767	MSKCC	GRCh37	19	3094689	3094689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			413	36	331	0	ENST00000078429.4:c.40G>A	p.Glu14Lys	p.E14K	ENST00000078429	NM_002067.2	14	Gag/Aag																																																																															
CUL3	8452	MSKCC	GRCh37	2	225367790	225367790	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			551	80	268	1	ENST00000264414.4:c.1378-1G>T		p.X460_splice	ENST00000264414	NM_003590.4	460																																																																																
TOP1	7150	MSKCC	GRCh37	20	39746816	39746816	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			809	130	494	0	ENST00000361337.2:c.1830G>C	p.Glu610Asp	p.E610D	ENST00000361337	NM_003286.2	610	gaG/gaC																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42870072	42870072	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			608	164	646	0	ENST00000398585.3:c.100G>T	p.Asp34Tyr	p.D34Y	ENST00000398585	NM_001135099.1	34	Gat/Tat																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138426070	138426070	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			687	99	397	0	ENST00000289153.2:c.1461T>G	p.Asn487Lys	p.N487K	ENST00000289153	NM_006219.2	487	aaT/aaG																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801524	1801524	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			884	176	932	1	ENST00000260795.2:c.430A>T	p.Thr144Ser	p.T144S	ENST00000260795		144	Aca/Tca																																																																															
KDR	3791	MSKCC	GRCh37	4	55964923	55964924	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	115	338	0	ENST00000263923.4:c.2313_2314delinsTT	p.Ala772Ser	p.A772S	ENST00000263923	NM_002253.2	771	acGGcg/acTTcg																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99806101	99806101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			228	51	158	0	ENST00000280892.6:c.571G>C	p.Glu191Gln	p.E191Q	ENST00000280892	NM_001130678.1	191	Gaa/Caa																																																																															
MET	4233	MSKCC	GRCh37	7	116418977	116418977	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			474	75	322	0	ENST00000397752.3:c.3488G>T	p.Gly1163Val	p.G1163V	ENST00000397752	NM_000245.2	1163	gGa/gTa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738798	145738798	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1309	490	1259	0	ENST00000428558.2:c.2267T>C	p.Val756Ala	p.V756A	ENST00000428558	NM_004260.3	756	gTa/gCa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484345	8484345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	184	366	0	ENST00000356435.5:c.3187G>T	p.Val1063Leu	p.V1063L	ENST00000356435		1063	Gtg/Ttg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87325559	87325559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	153	350	0	ENST00000277120.3:c.436G>T	p.Val146Leu	p.V146L	ENST00000277120		146	Gtg/Ttg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426732	47426732	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1313544010		P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			579	204	423	0	ENST00000377045.4:c.977G>A	p.Arg326Gln	p.R326Q	ENST00000377045	NM_001654.4	326	cGa/cAa																																																																															
SETD8	387893	MSKCC	GRCh37	12	123879732	123879732	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			43	27	41	0	ENST00000330479.4:c.428C>G	p.Ser143Ter	p.S143*	ENST00000330479	NM_020382.3	143	tCa/tGa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942173	81942174	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	T			P-0056802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			697	106	634	0	ENST00000359376.3:c.1710_1711delinsT	p.Asn571MetfsTer27	p.N571Mfs*27	ENST00000359376	NM_002661.3	570	ccCAat/ccTat																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838389	156838389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1357016517		P-0056812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	61	1472	0	ENST00000524377.1:c.667G>A	p.Glu223Lys	p.E223K	ENST00000524377	NM_002529.3	223	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112173345	112173345	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0056815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	57	314	0	ENST00000257430.4:c.2054G>A	p.Trp685Ter	p.W685*	ENST00000257430	NM_000038.5	685	tGg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913527		P-0056815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	151	510	1	ENST00000256078.4:c.436G>C	p.Ala146Pro	p.A146P	ENST00000256078	NM_033360.2	146	Gca/Cca																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739894	41739894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	73	676	0	ENST00000242208.4:c.79G>A	p.Glu27Lys	p.E27K	ENST00000242208	NM_002192.2	27	Gag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11169001	11169001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	514	1112	0	ENST00000344626.4:c.4495G>A	p.Glu1499Lys	p.E1499K	ENST00000344626	NM_003072.3	1499	Gag/Aag																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165707	118165707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	48	502	0	ENST00000369448.3:c.217G>A	p.Gly73Ser	p.G73S	ENST00000369448	NM_017709.3	73	Ggc/Agc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912054	32912054	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0056815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	64	723	0	ENST00000380152.3:c.3562A>T	p.Ile1188Phe	p.I1188F	ENST00000380152		1188	Att/Ttt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31409436	31409436	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0056815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	70	368	0	ENST00000344624.3:c.3671T>G	p.Phe1224Cys	p.F1224C	ENST00000344624		1224	tTt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112175531	112175532	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0056815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	141	352	0	ENST00000257430.4:c.4241_4242dup	p.Ser1415Ter	p.S1415*	ENST00000257430	NM_000038.5	1414	gta/gTAta																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0056832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	352	782	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060910	38060926	+	frameshift_variant	Frame_Shift_Del	DEL	ATGGGGGGCGCAGTTGA	ATGGGGGGCGCAGTTGA	-			P-0056832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	95	786	1	ENST00000250448.2:c.1063_1079del	p.Ser355LysfsTer54	p.S355Kfs*54	ENST00000250448	NM_004496.3	355	TCAACTGCGCCCCCCATa/a																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37882814	37882814	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0056832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	175	775	0	ENST00000269571.5:c.2873-1G>C		p.X958_splice	ENST00000269571		958																																																																																
BARD1	580	MSKCC	GRCh37	2	215610539	215610539	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0056832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	67	539	0	ENST00000260947.4:c.1717A>T	p.Ile573Leu	p.I573L	ENST00000260947	NM_000465.2	573	Ata/Tta																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004735	16004743	+	frameshift_variant	Frame_Shift_Del	DEL	TTATCACCT	TTATCACCT	A			P-0056832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	181	740	0	ENST00000268712.3:c.2511_2519delinsT	p.Glu837AspfsTer9	p.E837Dfs*9	ENST00000268712	NM_006311.3	837	gaAGGTGATAAt/gaTt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257524	16257524	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	66	447	1	ENST00000375759.3:c.4789G>T	p.Glu1597Ter	p.E1597*	ENST00000375759	NM_015001.2	1597	Gaa/Taa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	45	451	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	101	587	0	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838380	156838380	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202030811		P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	130	1322	0	ENST00000524377.1:c.658C>T	p.Arg220Trp	p.R220W	ENST00000524377	NM_002529.3	220	Cgg/Tgg																																																																															
RET	5979	MSKCC	GRCh37	10	43604533	43604533	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs546866208		P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	120	935	0	ENST00000355710.3:c.1118C>T	p.Ala373Val	p.A373V	ENST00000355710	NM_020975.4	373	gCg/gTg																																																																															
RET	5979	MSKCC	GRCh37	10	43617452	43617452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	68	456	0	ENST00000355710.3:c.2789C>T	p.Thr930Met	p.T930M	ENST00000355710	NM_020975.4	930	aCg/aTg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63662114	63662114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	100	459	0	ENST00000279873.7:c.218C>T	p.Ser73Phe	p.S73F	ENST00000279873	NM_032199.2	73	tCt/tTt																																																																															
SUFU	51684	MSKCC	GRCh37	10	104309777	104309777	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745958724		P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	101	777	0	ENST00000369902.3:c.368G>A	p.Arg123His	p.R123H	ENST00000369902	NM_016169.3	123	cGt/cAt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118372449	118372451	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	48	616	0	ENST00000534358.1:c.6386_6388del	p.Pro2129del	p.P2129del	ENST00000534358	NM_005933.3	2128	CCT/-																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871052	12871053	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	52	515	0	ENST00000228872.4:c.285dup	p.Lys96GlnfsTer29	p.K96Qfs*29	ENST00000228872	NM_004064.3	93	-/C																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871172	12871173	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	72	425	0	ENST00000228872.4:c.400_401del	p.Lys134AspfsTer2	p.K134Dfs*2	ENST00000228872	NM_004064.3	133	ccAAag/ccag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246417	46246417	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778810498		P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	63	344	0	ENST00000334344.6:c.4511G>A	p.Arg1504Gln	p.R1504Q	ENST00000334344	NM_152641.2	1504	cGg/cAg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012459	29012459	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	42	587	0	ENST00000282397.4:c.412A>T	p.Met138Leu	p.M138L	ENST00000282397	NM_002019.4	138	Atg/Ttg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068301	30068301	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	49	395	0	ENST00000331968.5:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000331968	NM_002742.2	700	Aaa/Gaa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222600	2222600	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	28	824	0	ENST00000326181.6:c.794G>T	p.Gly265Val	p.G265V	ENST00000326181	NM_032271.2	265	gGg/gTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274018	10274018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1354238435		P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	139	1233	0	ENST00000330684.3:c.251C>T	p.Thr84Met	p.T84M	ENST00000330684	NM_001134407.1	84	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832332	72832332	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	111	676	0	ENST00000268489.5:c.4249C>T	p.Gln1417Ter	p.Q1417*	ENST00000268489	NM_006885.3	1417	Cag/Tag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89877404	89877404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	132	772	0	ENST00000389301.3:c.359G>A	p.Ser120Asn	p.S120N	ENST00000389301	NM_000135.2	120	aGc/aAc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004808	16004808	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs76080188		P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	116	773	3	ENST00000268712.3:c.2446G>A	p.Ala816Thr	p.A816T	ENST00000268712	NM_006311.3	816	Gct/Act																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	57	558	0	ENST00000347630.2:c.304T>C	p.Phe102Leu	p.F102L	ENST00000347630	NM_001007230.1	102	Ttc/Ctc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436028	56436028	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	78	729	0	ENST00000407977.2:c.1109del	p.Pro370HisfsTer49	p.P370Hfs*49	ENST00000407977		370	cCa/ca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	119	1208	4	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
INSR	3643	MSKCC	GRCh37	19	7122996	7122996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1377722635		P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	122	1053	2	ENST00000302850.5:c.3263G>A	p.Arg1088His	p.R1088H	ENST00000302850	NM_000208.2	1088	cGc/cAc																																																																															
INSR	3643	MSKCC	GRCh37	19	7125293	7125293	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	81	782	1	ENST00000302850.5:c.3258+1G>A		p.X1086_splice	ENST00000302850	NM_000208.2	1086																																																																																
ERF	2077	MSKCC	GRCh37	19	42754054	42754055	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	98	795	0	ENST00000222329.4:c.297dup	p.Lys100GlufsTer21	p.K100Efs*21	ENST00000222329	NM_006494.2	99	-/G																																																																															
MSH2	4436	MSKCC	GRCh37	2	47641432	47641433	+	inframe_insertion	In_Frame_Ins	INS	-	-	TAATCAAGT			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	79	479	0	ENST00000233146.2:c.819_827dup	p.Lys275_Phe276insLeuIleLys	p.K275_F276insLIK	ENST00000233146	NM_000251.2	273	gta/gTAATCAAGTta																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198268410	198268410	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	55	483	0	ENST00000335508.6:c.1618A>T	p.Met540Leu	p.M540L	ENST00000335508	NM_012433.2	540	Atg/Ttg																																																																															
INHA	3623	MSKCC	GRCh37	2	220439988	220439988	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1341715949		P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	133	1456	0	ENST00000243786.2:c.841G>A	p.Val281Met	p.V281M	ENST00000243786	NM_002191.3	281	Gtg/Atg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793340	242793340	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201540918		P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	142	1352	1	ENST00000334409.5:c.737C>T	p.Thr246Met	p.T246M	ENST00000334409	NM_005018.2	246	aCg/aTg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46256319	46256319	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	40	306	0	ENST00000371998.3:c.547T>C	p.Trp183Arg	p.W183R	ENST00000371998		183	Tgg/Cgg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274899	41274899	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	42	505	0	ENST00000349496.5:c.1149G>C	p.Trp383Cys	p.W383C	ENST00000349496	NM_001904.3	383	tgG/tgC																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277336	41277336	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	56	325	0	ENST00000349496.5:c.1803+2T>C		p.X601_splice	ENST00000349496	NM_001904.3	601																																																																																
KDR	3791	MSKCC	GRCh37	4	55963870	55963870	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	74	504	0	ENST00000263923.4:c.2573A>G	p.Lys858Arg	p.K858R	ENST00000263923	NM_002253.2	858	aAg/aGg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187530398	187530398	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778500047		P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	83	393	0	ENST00000441802.2:c.10145C>T	p.Ser3382Leu	p.S3382L	ENST00000441802	NM_005245.3	3382	tCg/tTg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	63	395	1	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
APC	324	MSKCC	GRCh37	5	112176740	112176740	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	17	287	0	ENST00000257430.4:c.5453del	p.Asn1818IlefsTer45	p.N1818Ifs*45	ENST00000257430	NM_000038.5	1817	Aaa/aa																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969909	161969909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	113	796	0	ENST00000366898.1:c.1060G>T	p.Gly354Trp	p.G354W	ENST00000366898	NM_004562.2	354	Ggg/Tgg																																																																															
SMO	6608	MSKCC	GRCh37	7	128846161	128846161	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	115	945	0	ENST00000249373.3:c.1091C>G	p.Thr364Ser	p.T364S	ENST00000249373	NM_005631.4	364	aCc/aGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878995	151878995	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	97	652	1	ENST00000262189.6:c.5950C>A	p.Leu1984Ile	p.L1984I	ENST00000262189	NM_170606.2	1984	Cta/Ata																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900141	151900141	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	27	298	0	ENST00000262189.6:c.3970G>T	p.Glu1324Ter	p.E1324*	ENST00000262189	NM_170606.2	1324	Gag/Tag																																																																															
LYN	4067	MSKCC	GRCh37	8	56863264	56863264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	85	689	0	ENST00000519728.1:c.408G>T	p.Arg136Ser	p.R136S	ENST00000519728	NM_002350.3	136	agG/agT																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786863	135786863	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs118203483		P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	87	490	0	ENST00000298552.3:c.1006C>T	p.Arg336Trp	p.R336W	ENST00000298552	NM_001162426.1	336	Cgg/Tgg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396860	139396860	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368396893		P-0056833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	105	986	2	ENST00000277541.6:c.5248G>A	p.Val1750Met	p.V1750M	ENST00000277541	NM_017617.3	1750	Gtg/Atg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115749	8115750	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCAA			P-0056836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	77	576	1	ENST00000346208.3:c.1136_1137insACGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCA	p.Val378_His379insGlnArgLysMetSerSerLysSerLysLysCysLysLysVal	p.V378_H379insQRKMSSKSKKCKKV	ENST00000346208		365	-/CGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCAA																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138472	11138472	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0056836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	161	694	0	ENST00000344626.4:c.3228C>G	p.Tyr1076Ter	p.Y1076*	ENST00000344626	NM_003072.3	1076	taC/taG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0056863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	50	1372	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
SYK	6850	MSKCC	GRCh37	9	93627350	93627350	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756047567		P-0056863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	128	527	1	ENST00000375746.1:c.817C>T	p.Arg273Cys	p.R273C	ENST00000375746	NM_001174167.1	273	Cgt/Tgt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0056863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	62	399	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256905	16256909	+	frameshift_variant	Frame_Shift_Del	DEL	CCACT	CCACT	-			P-0056863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	74	807	0	ENST00000375759.3:c.4171_4175del	p.His1391ThrfsTer8	p.H1391Tfs*8	ENST00000375759	NM_015001.2	1390	tcCCACTca/tcca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258868	16258869	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0056863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	341	780	0	ENST00000375759.3:c.6134_6135del	p.Arg2045LysfsTer11	p.R2045Kfs*11	ENST00000375759	NM_015001.2	2045	AGa/a																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061267	38061267	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1398	295	1199	0	ENST00000250448.2:c.722G>C	p.Gly241Ala	p.G241A	ENST00000250448	NM_004496.3	241	gGc/gCc																																																																															
APC	324	MSKCC	GRCh37	5	112175720	112175720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	144	333	0	ENST00000257430.4:c.4429C>T	p.Gln1477Ter	p.Q1477*	ENST00000257430	NM_000038.5	1477	Cag/Tag																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140165	50140165	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0056866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	328	922	0	ENST00000246792.3:c.260A>T	p.Gln87Leu	p.Q87L	ENST00000246792	NM_006270.3	87	cAg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0056866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	118	623	0	ENST00000269305.4:c.673-2A>C		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
ATM	472	MSKCC	GRCh37	11	108200960	108200960	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121434220		P-0056866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	60	362	1	ENST00000278616.4:c.7327C>T	p.Arg2443Ter	p.R2443*	ENST00000278616	NM_000051.3	2443	Cga/Tga																																																																															
LMO1	4004	MSKCC	GRCh37	11	8252029	8252029	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	323	939	0	ENST00000335790.3:c.48G>T	p.Gln16His	p.Q16H	ENST00000335790	NM_002315.2	16	caG/caT																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128050415	128050415	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0056866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	86	418	0	ENST00000285398.2:c.242A>T	p.Asp81Val	p.D81V	ENST00000285398	NM_000122.1	81	gAt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0056867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	403	790	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
STAG2	10735	MSKCC	GRCh37	X	123171442	123171442	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	184	429	0	ENST00000218089.9:c.354C>G	p.Ile118Met	p.I118M	ENST00000218089	NM_001042749.1	118	atC/atG																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100988	27100988	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	208	744	0	ENST00000324856.7:c.4270C>T	p.Gln1424Ter	p.Q1424*	ENST00000324856	NM_006015.4	1424	Cag/Tag																																																																															
CDH1	999	MSKCC	GRCh37	16	68842333	68842333	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	118	390	0	ENST00000261769.5:c.394G>C	p.Val132Leu	p.V132L	ENST00000261769	NM_004360.3	132	Gtt/Ctt																																																																															
AKT1	207	MSKCC	GRCh37	14	105239418	105239418	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	372	873	0	ENST00000349310.3:c.969C>G	p.Asp323Glu	p.D323E	ENST00000349310	NM_001014432.1	323	gaC/gaG																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900547	3900547	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	475	904	0	ENST00000262367.5:c.549G>C	p.Gln183His	p.Q183H	ENST00000262367	NM_004380.2	183	caG/caC																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411405	63411405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	151	918	0	ENST00000330258.3:c.1762G>A	p.Ala588Thr	p.A588T	ENST00000330258	NM_152424.3	588	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519989		P-0056869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	43	892	1	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0056869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	68	413	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112173947	112173947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	25	410	0	ENST00000257430.4:c.2656C>T	p.Gln886Ter	p.Q886*	ENST00000257430	NM_000038.5	886	Cag/Tag																																																																															
MST1R	4486	MSKCC	GRCh37	3	49924823	49924823	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772336656		P-0056869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	25	1418	3	ENST00000296474.3:c.4120C>T	p.Arg1374Cys	p.R1374C	ENST00000296474	NM_002447.2	1374	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112176035	112176035	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	20	373	0	ENST00000257430.4:c.4744del	p.Ala1582ProfsTer68	p.A1582Pfs*68	ENST00000257430	NM_000038.5	1582	Gcc/cc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519968		P-0056874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	112	546	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95574216	95574216	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0056874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	69	253	0	ENST00000343455.3:c.2650+1G>C		p.X884_splice	ENST00000343455	NM_177438.2	884																																																																																
ALK	238	MSKCC	GRCh37	2	29462609	29462609	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056879-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			219	110	515	0	ENST00000389048.3:c.2292C>G	p.Asn764Lys	p.N764K	ENST00000389048	NM_004304.4	764	aaC/aaG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921551	178921551	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0056881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			443	20	240	0	ENST00000263967.3:c.1033A>T	p.Asn345Tyr	p.N345Y	ENST00000263967	NM_006218.2	345	Aat/Tat																																																																															
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0056881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			432	44	207	0	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105586	27105586	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			907	85	442	0	ENST00000324856.7:c.5197G>T	p.Glu1733Ter	p.E1733*	ENST00000324856	NM_006015.4	1733	Gag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730831	40730831	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs372700928		P-0056881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	99	589	0	ENST00000373198.4:c.3704G>T	p.Arg1235Leu	p.R1235L	ENST00000373198	NM_133170.3	1235	cGc/cTc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061845	38061862	+	inframe_deletion	In_Frame_Del	DEL	CATGTAGGTGTTCATGGA	CATGTAGGTGTTCATGGA	-			P-0056881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1198	116	644	0	ENST00000250448.2:c.127_144del	p.Ser43_Met48del	p.S43_M48del	ENST00000250448	NM_004496.3	43	TCCATGAACACCTACATG/-																																																																															
TSC2	7249	MSKCC	GRCh37	16	2122329	2122329	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0056881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1392	69	0	0	ENST00000219476.3:c.2185A>T	p.Ser729Cys	p.S729C	ENST00000219476	NM_000548.3	729	Agt/Tgt																																																																															
CDH1	999	MSKCC	GRCh37	16	68856083	68856084	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0056881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			860	88	496	0	ENST00000261769.5:c.1895_1896del	p.His632ArgfsTer30	p.H632Rfs*30	ENST00000261769	NM_004360.3	631	ACa/a																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0056896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	28	359	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660548		P-0056896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	65	976	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141012	55141012	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501502		P-0056896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	19	258	0	ENST00000257290.5:c.1658C>T	p.Pro553Leu	p.P553L	ENST00000257290	NM_006206.4	553	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0056925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	95	415	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0056925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	185	869	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0056925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	81	237	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	26	488	0	ENST00000263967.3:c.3012G>T	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106142	27106142	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369532498		P-0056925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	121	726	0	ENST00000324856.7:c.5753G>A	p.Arg1918Gln	p.R1918Q	ENST00000324856	NM_006015.4	1918	cGg/cAg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56855488	56855488	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs567027753		P-0056925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	116	373	0	ENST00000308159.5:c.637G>A	p.Ala213Thr	p.A213T	ENST00000308159	NM_014669.4	213	Gca/Aca																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513310	44513310	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs930924689		P-0056925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	187	757	1	ENST00000291552.4:c.625C>T	p.Arg209Cys	p.R209C	ENST00000291552	NM_006758.2	209	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0056926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	142	419	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0056926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	49	418	2	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660548		P-0056926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	78	1039	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121076	11121076	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1131691371		P-0056926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	48	792	0	ENST00000344626.4:c.2143G>A	p.Asp715Asn	p.D715N	ENST00000344626	NM_003072.3	715	Gat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0056932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	154	400	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220400	1220400	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1359582062		P-0056932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	263	880	0	ENST00000326873.7:c.493G>T	p.Glu165Ter	p.E165*	ENST00000326873	NM_000455.4	165	Gag/Tag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727487	88727487	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1352987249		P-0056932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	232	723	0	ENST00000360948.2:c.292G>T	p.Asp98Tyr	p.D98Y	ENST00000360948	NM_001012338.2	98	Gac/Tac																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106066	8106066	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	157	577	0	ENST00000346208.3:c.886C>A	p.Gln296Lys	p.Q296K	ENST00000346208		296	Cag/Aag																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175777	176175777	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	152	660	0	ENST00000367669.3:c.338G>C	p.Arg113Pro	p.R113P	ENST00000367669	NM_022457.5	113	cGa/cCa																																																																															
RET	5979	MSKCC	GRCh37	10	43620389	43620389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	161	673	0	ENST00000355710.3:c.2998G>A	p.Asp1000Asn	p.D1000N	ENST00000355710	NM_020975.4	1000	Gac/Aac																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518028	69518028	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0056932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	114	806	0	ENST00000294312.3:c.336+1del		p.X112_splice	ENST00000294312	NM_005117.2	112																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10610223	10610223	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0056932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	297	948	1	ENST00000171111.5:c.487C>T	p.Gln163Ter	p.Q163*	ENST00000171111	NM_203500.1	163	Cag/Tag																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082931	16082931	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1228008742		P-0056932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	34	386	1	ENST00000281043.3:c.745C>T	p.His249Tyr	p.H249Y	ENST00000281043	NM_005378.4	249	Cac/Tac																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739629	41739629	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	69	499	0	ENST00000242208.4:c.344A>G	p.Glu115Gly	p.E115G	ENST00000242208	NM_002192.2	115	gAa/gGa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55220293	55220293	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	207	869	0	ENST00000275493.2:c.683C>G	p.Pro228Arg	p.P228R	ENST00000275493	NM_005228.3	228	cCc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0056937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	432	947	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	113	248	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953214	81953214	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369516453		P-0056937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	287	454	0	ENST00000359376.3:c.2180G>A	p.Arg727Gln	p.R727Q	ENST00000359376	NM_002661.3	727	cGa/cAa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622148	1622148	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751551556		P-0056937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	287	842	0	ENST00000344749.5:c.727G>A	p.Gly243Ser	p.G243S	ENST00000344749	NM_001136139.2	243	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0056943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	404	746	1	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
MTOR	2475	MSKCC	GRCh37	1	11298526	11298526	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	228	744	0	ENST00000361445.4:c.1935C>G	p.Ser645Arg	p.S645R	ENST00000361445	NM_004958.3	645	agC/agG																																																																															
BARD1	580	MSKCC	GRCh37	2	215645691	215645691	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs375048835		P-0056943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	125	597	0	ENST00000260947.4:c.907G>C	p.Val303Leu	p.V303L	ENST00000260947	NM_000465.2	303	Gtc/Ctc																																																																															
IRF4	3662	MSKCC	GRCh37	6	394891	394891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	335	604	0	ENST00000380956.4:c.287G>T	p.Arg96Leu	p.R96L	ENST00000380956	NM_001195286.1	96	cGc/cTc																																																																															
ATRX	546	MSKCC	GRCh37	X	76812979	76812979	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0056943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	156	293	0	ENST00000373344.5:c.6642A>C	p.Leu2214Phe	p.L2214F	ENST00000373344	NM_000489.3	2214	ttA/ttC																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827759	72827759	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1185453374		P-0056951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	321	602	0	ENST00000268489.5:c.8822G>T	p.Gly2941Val	p.G2941V	ENST00000268489	NM_006885.3	2941	gGa/gTa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267381	198267381	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	153	439	0	ENST00000335508.6:c.1976A>G	p.Gln659Arg	p.Q659R	ENST00000335508	NM_012433.2	659	cAa/cGa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55131208	55131208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	175	395	0	ENST00000257290.5:c.751G>A	p.Gly251Arg	p.G251R	ENST00000257290	NM_006206.4	251	Gga/Aga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061194	+	frameshift_variant	Frame_Shift_Del	DEL	GAAG	GAAG	CTT			P-0056951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	385	363	1	ENST00000250448.2:c.795_798delinsAAG	p.Phe266ArgfsTer55	p.F266Rfs*55	ENST00000250448	NM_004496.3	265	cgCTTC/cgAAG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0056959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	103	631	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0056959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	20	374	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0056959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	148	765	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0056959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	41	402	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
CD79B	974	MSKCC	GRCh37	17	62007656	62007656	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs912718113		P-0056959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	192	635	0	ENST00000392795.3:c.211G>A	p.Ala71Thr	p.A71T	ENST00000392795	NM_001039933.1	71	Gcc/Acc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9525018	9525018	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0056959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	116	407	0	ENST00000353224.5:c.1867G>T	p.Glu623Ter	p.E623*	ENST00000353224	NM_177990.2	623	Gag/Tag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412542	63412542	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs748480637		P-0056959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	117	746	0	ENST00000330258.3:c.625A>T	p.Ser209Cys	p.S209C	ENST00000330258	NM_152424.3	209	Agc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0056960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	78	482	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0056960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	124	859	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0056960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	32	511	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0056960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	17	498	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29527461	29527461	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786203950		P-0056960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	28	499	0	ENST00000358273.4:c.910C>T	p.Arg304Ter	p.R304*	ENST00000358273	NM_001042492.2	304	Cga/Tga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637555	52637555	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0056960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	16	502	0	ENST00000394830.3:c.2761C>T	p.Arg921Ter	p.R921*	ENST00000394830	NM_018313.4	921	Cga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060499964		P-0056960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	62	845	0	ENST00000326873.7:c.667G>A	p.Glu223Lys	p.E223K	ENST00000326873	NM_000455.4	223	Gag/Aag																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900209	101900209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	22	456	0	ENST00000374994.4:c.643C>T	p.Arg215Ter	p.R215*	ENST00000374994	NM_004612.2	215	Cga/Tga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098423	11098423	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs549254467		P-0056960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	23	461	0	ENST00000344626.4:c.941C>T	p.Ala314Val	p.A314V	ENST00000344626	NM_003072.3	314	gCg/gTg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922760	44922760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	29	519	0	ENST00000377967.4:c.1621C>T	p.Gln541Ter	p.Q541*	ENST00000377967	NM_021140.2	541	Cag/Tag																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66519008	66519008	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	46	581	1	ENST00000358598.2:c.289C>T	p.Arg97Ter	p.R97*	ENST00000358598	NM_212471.2	97	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845580	151845580	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1287135873		P-0056960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	40	753	0	ENST00000262189.6:c.13432C>T	p.Arg4478Ter	p.R4478*	ENST00000262189	NM_170606.2	4478	Cga/Tga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530184	63530185	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGCTCTTTGTGACTGAAAATA			P-0056960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	46	560	0	ENST00000307078.5:c.2238-9_2250dup	p.Lys751TyrfsTer20	p.K751Yfs*20	ENST00000307078	NM_004655.3	750	-/TATTTTCAGTCACAAAGAGCCA																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0056992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	22	214	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576890	7576890	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	68	707	0	ENST00000269305.4:c.956del	p.Lys319ArgfsTer26	p.K319Rfs*26	ENST00000269305	NM_001126112.2	319	aAg/ag																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170013720	170013720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	51	348	0	ENST00000295797.4:c.1439G>A	p.Arg480His	p.R480H	ENST00000295797	NM_002740.5	480	cGc/cAc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266943	18266943	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760416536		P-0056992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	19	204	0	ENST00000222254.8:c.254G>A	p.Arg85Gln	p.R85Q	ENST00000222254	NM_005027.3	85	cGg/cAg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89478289	89478289	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0056992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	26	337	0	ENST00000336596.2:c.2108A>C	p.Glu703Ala	p.E703A	ENST00000336596	NM_005233.5	703	gAg/gCg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165176	32165176	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1157841409		P-0056992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	48	774	1	ENST00000375023.3:c.4952G>A	p.Arg1651His	p.R1651H	ENST00000375023	NM_004557.3	1651	cGc/cAc																																																																															
SYK	6850	MSKCC	GRCh37	9	93629450	93629450	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0056992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	22	253	0	ENST00000375746.1:c.884C>A	p.Ser295Ter	p.S295*	ENST00000375746	NM_001174167.1	295	tCa/tAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0057003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	72	317	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	74	496	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0057007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	74	403	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001410	29001410	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771714708		P-0057007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	95	366	0	ENST00000282397.4:c.1322C>T	p.Pro441Leu	p.P441L	ENST00000282397	NM_002019.4	441	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579349	7579349	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	242	907	0	ENST00000269305.4:c.338T>G	p.Phe113Cys	p.F113C	ENST00000269305	NM_001126112.2	113	tTc/tGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591933	48591933	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1060500733		P-0057007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	91	452	0	ENST00000342988.3:c.1096C>T	p.Gln366Ter	p.Q366*	ENST00000342988	NM_005359.5	366	Caa/Taa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G	rs730881677		P-0057007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	106	341	0	ENST00000304494.5:c.151-1G>C		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0057012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	353	381	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0057012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	85	368	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	180	358	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578397	7578397	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	382	834	1	ENST00000269305.4:c.533A>C	p.His178Pro	p.H178P	ENST00000269305	NM_001126112.2	178	cAc/cCc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372098	55372098	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62642516		P-0057012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	71	449	0	ENST00000297316.4:c.788C>T	p.Pro263Leu	p.P263L	ENST00000297316	NM_022454.3	263	cCg/cTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573651	48573651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	155	372	0	ENST00000342988.3:c.235G>T	p.Asp79Tyr	p.D79Y	ENST00000342988	NM_005359.5	79	Gat/Tat																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137219	64137219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	204	843	0	ENST00000334205.4:c.1651G>T	p.Asp551Tyr	p.D551Y	ENST00000334205	NM_003942.2	551	Gac/Tac																																																																															
KDR	3791	MSKCC	GRCh37	4	55958791	55958791	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	110	562	0	ENST00000263923.4:c.3062C>A	p.Ser1021Ter	p.S1021*	ENST00000263923	NM_002253.2	1021	tCg/tAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411423	63411423	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	361	960	0	ENST00000330258.3:c.1744G>T	p.Glu582Ter	p.E582*	ENST00000330258	NM_152424.3	582	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0057020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	179	368	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0057020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	444	875	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175908	112175909	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0057020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	55	242	0	ENST00000257430.4:c.4619_4620del	p.Glu1540AlafsTer3	p.E1540Afs*3	ENST00000257430	NM_000038.5	1539	tcAGag/tcag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43707915	43707915	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	378	921	1	ENST00000382044.4:c.4966C>T	p.Arg1656Ter	p.R1656*	ENST00000382044	NM_001141980.1	1656	Cga/Tga																																																																															
PREX2	80243	MSKCC	GRCh37	8	68934362	68934362	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745857499		P-0057020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	102	432	0	ENST00000288368.4:c.428G>A	p.Arg143Gln	p.R143Q	ENST00000288368	NM_024870.2	143	cGg/cAg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206653425	206653425	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	211	779	1	ENST00000367120.3:c.1309G>T	p.Glu437Ter	p.E437*	ENST00000367120	NM_014002.3	437	Gag/Tag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028677	12028753	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGATCACATTGGTATGTTTATGCTGATTCAACCTTGCCACAGTAGCGTAACAATAAGAAATTTAGAAGTGAAAGAA	GGGATCACATTGGTATGTTTATGCTGATTCAACCTTGCCACAGTAGCGTAACAATAAGAAATTTAGAAGTGAAAGAA	-			P-0057020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	81	391	0	ENST00000353533.5:c.880_891+65del		p.X294_splice	ENST00000353533	NM_003010.3	294																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602292	10602292	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	91	790	0	ENST00000171111.5:c.1286G>T	p.Gly429Val	p.G429V	ENST00000171111	NM_203500.1	429	gGc/gTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228800	36228800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1393734909		P-0057023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	90	823	1	ENST00000222270.7:c.7699C>T	p.Arg2567Cys	p.R2567C	ENST00000222270	NM_014727.1	2567	Cgt/Tgt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577351	64577351	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0057023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	76	699	0	ENST00000337652.1:c.231C>G	p.Tyr77Ter	p.Y77*	ENST00000337652	NM_130803.2	77	taC/taG																																																																															
STK11	6794	MSKCC	GRCh37	19	1219336	1219344	+	inframe_deletion	In_Frame_Del	DEL	GAGTACTGC	GAGTACTGC	-			P-0057023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	82	695	0	ENST00000326873.7:c.389_397del	p.Glu130_Cys132del	p.E130_C132del	ENST00000326873	NM_000455.4	130	GAGTACTGC/-																																																																															
INSR	3643	MSKCC	GRCh37	19	7184457	7184457	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1291755894		P-0057023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	114	774	0	ENST00000302850.5:c.844A>G	p.Asn282Asp	p.N282D	ENST00000302850	NM_000208.2	282	Aac/Gac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11136185	11136185	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0057023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	55	541	0	ENST00000344626.4:c.3168+1G>A		p.X1056_splice	ENST00000344626	NM_003072.3	1056																																																																																
ZRSR2	8233	MSKCC	GRCh37	X	15808626	15808626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	63	344	1	ENST00000307771.7:c.8C>T	p.Ala3Val	p.A3V	ENST00000307771	NM_005089.3	3	gCg/gTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0057026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	258	559	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416668	416668	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	28	300	0	ENST00000399788.2:c.3882G>C	p.Lys1294Asn	p.K1294N	ENST00000399788	NM_001042603.1	1294	aaG/aaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0057031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	79	358	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210451	2210451	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138206172		P-0057031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	93	737	0	ENST00000398665.3:c.1058C>T	p.Ala353Val	p.A353V	ENST00000398665	NM_032482.2	353	gCg/gTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0057031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	168	385	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200097	67200097	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs753125285		P-0057031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	100	655	1	ENST00000312629.5:c.484C>T	p.Arg162Ter	p.R162*	ENST00000312629	NM_003952.2	162	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912130	114912130	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0057031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	81	531	0	ENST00000543371.1:c.1200C>G	p.Tyr400Ter	p.Y400*	ENST00000543371	NM_001198531.1	400	taC/taG																																																																															
ATM	472	MSKCC	GRCh37	11	108158328	108158328	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0057031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	37	314	0	ENST00000278616.4:c.3995T>A	p.Ile1332Asn	p.I1332N	ENST00000278616	NM_000051.3	1332	aTt/aAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573630	48573630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	35	333	0	ENST00000342988.3:c.214G>T	p.Val72Phe	p.V72F	ENST00000342988	NM_005359.5	72	Gtt/Ttt																																																																															
HGF	3082	MSKCC	GRCh37	7	81334750	81334750	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	44	486	0	ENST00000222390.5:c.1966G>T	p.Glu656Ter	p.E656*	ENST00000222390	NM_000601.4	656	Gaa/Taa																																																																															
ATRX	546	MSKCC	GRCh37	X	76776339	76776339	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	112	541	0	ENST00000373344.5:c.7127G>C	p.Arg2376Thr	p.R2376T	ENST00000373344	NM_000489.3	2376	aGa/aCa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264143	46264143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746732554		P-0057032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	104	289	2	ENST00000371998.3:c.1190C>T	p.Ser397Leu	p.S397L	ENST00000371998		397	tCg/tTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458882	120458882	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	231	705	0	ENST00000256646.2:c.6463G>T	p.Glu2155Ter	p.E2155*	ENST00000256646	NM_024408.3	2155	Gaa/Taa																																																																															
CDH1	999	MSKCC	GRCh37	16	68842679	68842683	+	frameshift_variant	Frame_Shift_Del	DEL	TATTA	TATTA	-			P-0057032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	219	616	0	ENST00000261769.5:c.616_620del	p.Ile206Ter	p.I206*	ENST00000261769	NM_004360.3	205	ttTATTAtt/tttt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168805	56168805	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0057032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	224	345	0	ENST00000399503.3:c.1659C>G	p.Tyr553Ter	p.Y553*	ENST00000399503	NM_005921.1	553	taC/taG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0057033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	952	909	1	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0057033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	90	341	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117739669	117739669	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0057033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	68	284	0	ENST00000368508.3:c.124G>A	p.Gly42Ser	p.G42S	ENST00000368508	NM_002944.2	42	Ggc/Agc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248737	212248737	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0057033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	27	327	0	ENST00000342788.4:c.3530del	p.Asn1177MetfsTer27	p.N1177Mfs*27	ENST00000342788	NM_005235.2	1177	aAt/at																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600006	10600006	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	587	818	0	ENST00000171111.5:c.1570G>T	p.Gly524Cys	p.G524C	ENST00000171111	NM_203500.1	524	Ggc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106780	27106780	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	678	648	0	ENST00000324856.7:c.6391A>T	p.Asn2131Tyr	p.N2131Y	ENST00000324856	NM_006015.4	2131	Aat/Tat																																																																															
PAK1	5058	MSKCC	GRCh37	11	77070017	77070017	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	220	456	0	ENST00000356341.3:c.523G>T	p.Glu175Ter	p.E175*	ENST00000356341	NM_002576.4	175	Gaa/Taa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118363771	118363771	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0057033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	83	337	0	ENST00000534358.1:c.5005-1G>C		p.X1669_splice	ENST00000534358	NM_005933.3	1669																																																																																
STK11	6794	MSKCC	GRCh37	19	1220715	1220715	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0057033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	412	633	0	ENST00000326873.7:c.733C>G	p.Leu245Val	p.L245V	ENST00000326873	NM_000455.4	245	Ctc/Gtc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030786	48030786	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	40	285	0	ENST00000234420.5:c.3400G>T	p.Gly1134Ter	p.G1134*	ENST00000234420	NM_000179.2	1134	Gga/Tga																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873426	136873426	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	47	315	0	ENST00000241393.3:c.72G>T	p.Met24Ile	p.M24I	ENST00000241393	NM_003467.2	24	atG/atT																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31372583	31372583	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	113	587	0	ENST00000328111.2:c.224A>G	p.Asp75Gly	p.D75G	ENST00000328111	NM_006892.3	75	gAc/gGc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143003283	143003283	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	91	407	0	ENST00000262992.4:c.2543G>C	p.Arg848Thr	p.R848T	ENST00000262992	NM_001101669.1	848	aGg/aCg																																																																															
TERT	7015	MSKCC	GRCh37	5	1293982	1293982	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1833	1127	1040	0	ENST00000310581.5:c.1019A>T	p.Gln340Leu	p.Q340L	ENST00000310581	NM_198253.2	340	cAg/cTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111558	56111558	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7	43	18	0	ENST00000399503.3:c.158A>T	p.Glu53Val	p.E53V	ENST00000399503	NM_005921.1	53	gAg/gTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485918	8485919	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0057033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	157	414	0	ENST00000356435.5:c.2898_2899delinsAA	p.Pro967Thr	p.P967T	ENST00000356435		966	ctCCcg/ctAAcg																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	120	251	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0057035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	14	168	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578242	7578242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	342	654	1	ENST00000269305.4:c.607G>T	p.Val203Leu	p.V203L	ENST00000269305	NM_001126112.2	203	Gtg/Ttg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	442715	442715	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	56	462	1	ENST00000399788.2:c.1591G>T	p.Asp531Tyr	p.D531Y	ENST00000399788	NM_001042603.1	531	Gat/Tat																																																																															
INSR	3643	MSKCC	GRCh37	19	7119485	7119485	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	97	687	0	ENST00000302850.5:c.3769C>T	p.Gln1257Ter	p.Q1257*	ENST00000302850	NM_000208.2	1257	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0057039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	65	621	1	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																																
NF1	4763	MSKCC	GRCh37	17	29576105	29576105	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	84	462	0	ENST00000358273.4:c.4078C>T	p.Gln1360Ter	p.Q1360*	ENST00000358273	NM_001042492.2	1360	Caa/Taa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546959	9546959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	64	382	1	ENST00000353224.5:c.1063G>A	p.Ala355Thr	p.A355T	ENST00000353224	NM_177990.2	355	Gcc/Acc																																																																															
RET	5979	MSKCC	GRCh37	10	43620388	43620388	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	33	534	0	ENST00000355710.3:c.2998del	p.Asp1000ThrfsTer9	p.D1000Tfs*9	ENST00000355710	NM_020975.4	999	gcG/gc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437756	49437756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	101	638	0	ENST00000301067.7:c.5214G>T	p.Glu1738Asp	p.E1738D	ENST00000301067	NM_003482.3	1738	gaG/gaT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602750	10602750	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	139	852	0	ENST00000171111.5:c.828G>T	p.Leu276Phe	p.L276F	ENST00000171111	NM_203500.1	276	ttG/ttT																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025987	48025987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	77	394	0	ENST00000234420.5:c.865G>T	p.Gly289Cys	p.G289C	ENST00000234420	NM_000179.2	289	Ggc/Tgc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46256737	46256737	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	50	421	0	ENST00000371998.3:c.793G>C	p.Glu265Gln	p.E265Q	ENST00000371998		265	Gag/Cag																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121008	29121008	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	63	579	0	ENST00000328354.6:c.549G>T	p.Leu183Phe	p.L183F	ENST00000328354	NM_007194.3	183	ttG/ttT																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180539	56180539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	33	263	0	ENST00000399503.3:c.3868G>T	p.Ala1290Ser	p.A1290S	ENST00000399503	NM_005921.1	1290	Gca/Tca																																																																															
IRF4	3662	MSKCC	GRCh37	6	401699	401699	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	97	575	0	ENST00000380956.4:c.1021G>T	p.Ala341Ser	p.A341S	ENST00000380956	NM_001195286.1	341	Gcg/Tcg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982053	93982053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	83	379	1	ENST00000369303.4:c.1412G>T	p.Gly471Val	p.G471V	ENST00000369303	NM_004440.3	471	gGa/gTa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372037	55372037	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	45	440	0	ENST00000297316.4:c.727G>C	p.Gly243Arg	p.G243R	ENST00000297316	NM_022454.3	243	Ggg/Cgg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87549115	87549115	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	50	498	0	ENST00000277120.3:c.1672A>T	p.Arg558Trp	p.R558W	ENST00000277120		558	Agg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0057041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	23	357	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241677	55241677	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs727504256		P-0057041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	71	649	1	ENST00000275493.2:c.2125G>A	p.Glu709Lys	p.E709K	ENST00000275493	NM_005228.3	709	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0057041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	56	558	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974760	21974760	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691186		P-0057041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	18	242	0	ENST00000304494.5:c.67G>T	p.Gly23Cys	p.G23C	ENST00000304494	NM_000077.4	23	Ggt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087555	27087555	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1171422700		P-0057041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	68	644	0	ENST00000324856.7:c.2129G>T	p.Arg710Leu	p.R710L	ENST00000324856	NM_006015.4	710	cGc/cTc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56414966	56414966	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0057041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	32	465	0	ENST00000348428.3:c.2369del	p.Phe790SerfsTer16	p.F790Sfs*16	ENST00000348428	NM_006785.3	789	agT/ag																																																																															
TCF3	6929	MSKCC	GRCh37	19	1625689	1625689	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	65	732	0	ENST00000344749.5:c.385G>T	p.Glu129Ter	p.E129*	ENST00000344749	NM_001136139.2	129	Gag/Tag																																																																															
MLH1	4292	MSKCC	GRCh37	3	37035054	37035054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	40	427	0	ENST00000231790.2:c.16G>A	p.Gly6Arg	p.G6R	ENST00000231790	NM_000249.3	6	Ggg/Agg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435201	18435202	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0057048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	63	309	0	ENST00000266497.5:c.192dup	p.Val65CysfsTer16	p.V65Cfs*16	ENST00000266497		62	-/T																																																																															
MGA	23269	MSKCC	GRCh37	15	41961493	41961493	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771815727		P-0057048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	142	579	0	ENST00000219905.7:c.401G>A	p.Arg134His	p.R134H	ENST00000219905	NM_001164273.1	134	cGt/cAt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11210254	11210254	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	127	604	1	ENST00000361445.4:c.4499A>G	p.Lys1500Arg	p.K1500R	ENST00000361445	NM_004958.3	1500	aAg/aGg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434872	110434872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	101	908	2	ENST00000375856.3:c.3529G>A	p.Val1177Met	p.V1177M	ENST00000375856	NM_003749.2	1177	Gtg/Atg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26022325	26022326	+	stop_gained	Nonsense_Mutation	INS	-	-	AACTCTGGGACCATC			P-0057048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	117	615	0	ENST00000435504.4:c.331_332insGATGGTCCCAGAGTT	p.Ser110_Ser111insTer	p.S110_S111ins*	ENST00000435504		111	tct/tGATGGTCCCAGAGTTct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	212	748	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519922		P-0057049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	193	494	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																															
RB1	5925	MSKCC	GRCh37	13	48947596	48947596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	98	296	0	ENST00000267163.4:c.1183C>T	p.Gln395Ter	p.Q395*	ENST00000267163	NM_000321.2	395	Caa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs121913274		P-0057049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	47	494	0	ENST00000263967.3:c.1634A>C	p.Glu545Ala	p.E545A	ENST00000263967	NM_006218.2	545	gAg/gCg																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152864480	152864481	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T	rs782693729		P-0057049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	24	25	0	ENST00000406277.2:c.47dup	p.Ala19GlyfsTer37	p.A19Gfs*37	ENST00000406277	NM_152274.4	16	gag/gaAg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545758	106545758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	158	464	0	ENST00000359195.3:c.3235G>A	p.Gly1079Arg	p.G1079R	ENST00000359195	NM_002649.2	1079	Gga/Aga																																																																															
PGR	5241	MSKCC	GRCh37	11	100912821	100912821	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	88	283	0	ENST00000325455.5:c.2501G>T	p.Gly834Val	p.G834V	ENST00000325455	NM_001202474.3	834	gGg/gTg																																																																															
PGR	5241	MSKCC	GRCh37	11	100996800	100996800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	122	432	0	ENST00000325455.5:c.1727G>A	p.Gly576Asp	p.G576D	ENST00000325455	NM_001202474.3	576	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378700	25378700	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	23	213	0	ENST00000256078.4:c.298A>G	p.Ile100Val	p.I100V	ENST00000256078	NM_033360.2	100	Att/Gtt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435384	110435384	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	144	467	0	ENST00000375856.3:c.3017T>C	p.Leu1006Pro	p.L1006P	ENST00000375856	NM_003749.2	1006	cTg/cCg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670797	134670797	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	118	395	0	ENST00000398015.3:c.708C>G	p.Ile236Met	p.I236M	ENST00000398015	NM_004441.4	236	atC/atG																																																																															
PARK2	5071	MSKCC	GRCh37	6	161771188	161771188	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	218	591	1	ENST00000366898.1:c.1341G>T	p.Trp447Cys	p.W447C	ENST00000366898	NM_004562.2	447	tgG/tgT																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0057064-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			331	174	344	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0057064-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			678	100	642	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs377767347		P-0057064-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	49	402	0	ENST00000342988.3:c.1082G>T	p.Arg361Leu	p.R361L	ENST00000342988	NM_005359.5	361	cGc/cTc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434967	110434967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057064-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			719	101	627	1	ENST00000375856.3:c.3434G>A	p.Arg1145His	p.R1145H	ENST00000375856	NM_003749.2	1145	cGc/cAc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21555739	21555739	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057064-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			786	108	689	0	ENST00000382592.4:c.2531A>G	p.Asp844Gly	p.D844G	ENST00000382592	NM_014572.2	844	gAt/gGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0057078-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			192	121	523	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057078-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			456	463	887	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789661	3789661	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057078-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			239	240	483	0	ENST00000262367.5:c.4198G>C	p.Glu1400Gln	p.E1400Q	ENST00000262367	NM_004380.2	1400	Gag/Cag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs149680468		P-0057078-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			167	150	256	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413030	63413030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057078-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	502	1044	0	ENST00000330258.3:c.137C>T	p.Ser46Leu	p.S46L	ENST00000330258	NM_152424.3	46	tCa/tTa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923766	72923766	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057078-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	402	668	0	ENST00000268489.5:c.3312C>G	p.Ile1104Met	p.I1104M	ENST00000268489	NM_006885.3	1104	atC/atG																																																																															
NSD1	64324	MSKCC	GRCh37	5	176709524	176709524	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587784169		P-0057078-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			66	89	219	0	ENST00000439151.2:c.5951G>A	p.Arg1984Gln	p.R1984Q	ENST00000439151	NM_022455.4	1984	cGa/cAa																																																																															
FANCC	2176	MSKCC	GRCh37	9	97864023	97864023	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730881729		P-0057078-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			592	248	533	0	ENST00000289081.3:c.1643G>A	p.Arg548Gln	p.R548Q	ENST00000289081	NM_000136.2	548	cGa/cAa																																																																															
RB1	5925	MSKCC	GRCh37	13	48919276	48919277	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0057078-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			36	23	159	0	ENST00000267163.4:c.442dup	p.Met148AsnfsTer9	p.M148Nfs*9	ENST00000267163	NM_000321.2	147	-/A																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946093	13946093	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs767110553		P-0057078-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			286	125	315	1	ENST00000405192.2:c.1003G>T	p.Gly335Cys	p.G335C	ENST00000405192	NM_001163147.1	335	Ggt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0057090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	64	471	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0057090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	80	1031	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
CDH1	999	MSKCC	GRCh37	16	68867388	68867388	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	59	689	0	ENST00000261769.5:c.2635G>T	p.Gly879Cys	p.G879C	ENST00000261769	NM_004360.3	879	Ggc/Tgc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436066	56436066	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0057090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	92	957	0	ENST00000407977.2:c.1071C>G	p.Tyr357Ter	p.Y357*	ENST00000407977		357	taC/taG																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15821881	15821881	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	43	249	0	ENST00000307771.7:c.274A>G	p.Lys92Glu	p.K92E	ENST00000307771	NM_005089.3	92	Aag/Gag																																																																															
RB1	5925	MSKCC	GRCh37	13	48955578	48955578	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0057092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	27	274	0	ENST00000267163.4:c.1694C>G	p.Ser565Ter	p.S565*	ENST00000267163	NM_000321.2	565	tCa/tGa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453137	140453138	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGT			P-0057092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	82	395	0	ENST00000288602.6:c.1795_1797dup	p.Thr599dup	p.T599dup	ENST00000288602	NM_004333.4	599	-/ACA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106456	27106456	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	74	721	0	ENST00000324856.7:c.6067G>T	p.Glu2023Ter	p.E2023*	ENST00000324856	NM_006015.4	2023	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579503	7579528	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CATCTGGACCTGGGTCTTCAGTGAAC	CATCTGGACCTGGGTCTTCAGTGAAC	-			P-0057092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	101	1074	0	ENST00000269305.4:c.159_184del	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgGTTCACTGAAGACCCAGGTCCAGATGaa/tgaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs786203436		P-0057102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	125	851	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489786	40489786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	112	545	0	ENST00000264657.5:c.640C>T	p.Arg214Trp	p.R214W	ENST00000264657	NM_139276.2	214	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584605	48584606	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0057102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	96	342	0	ENST00000342988.3:c.779dup	p.Tyr260Ter	p.Y260*	ENST00000342988	NM_005359.5	260	tac/tAac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139440186	139440186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	23	124	0	ENST00000277541.6:c.53C>T	p.Ala18Val	p.A18V	ENST00000277541	NM_017617.3	18	gCc/gTc																																																																															
MAX	4149	MSKCC	GRCh37	14	65544715	65544722	+	frameshift_variant	Frame_Shift_Del	DEL	TATATTCT	TATATTCT	-			P-0057102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	227	620	0	ENST00000358664.4:c.204_211del	p.Glu69ProfsTer15	p.E69Pfs*15	ENST00000358664	NM_002382.4	68	acAGAATATAtc/actc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40468910	40468910	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	59	351	0	ENST00000264657.5:c.2154C>A	p.Cys718Ter	p.C718*	ENST00000264657	NM_139276.2	718	tgC/tgA																																																																															
CASP8	841	MSKCC	GRCh37	2	202149852	202149852	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	126	542	0	ENST00000358485.4:c.1293G>C	p.Glu431Asp	p.E431D	ENST00000358485	NM_001080125.1	431	gaG/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0057103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	413	669	0	ENST00000269305.4:c.559+2T>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
SETD2	29072	MSKCC	GRCh37	3	47098665	47098665	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0057103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	135	677	0	ENST00000409792.3:c.6609T>A	p.Tyr2203Ter	p.Y2203*	ENST00000409792	NM_014159.6	2203	taT/taA																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187084	38187084	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	108	686	0	ENST00000317025.8:c.1393C>A	p.Pro465Thr	p.P465T	ENST00000317025	NM_023034.1	465	Cct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0057114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	461	745	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
KIT	3815	MSKCC	GRCh37	4	55524236	55524236	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	166	768	0	ENST00000288135.5:c.55C>G	p.Arg19Gly	p.R19G	ENST00000288135	NM_000222.2	19	Cgc/Ggc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111794	56111794	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs557606535		P-0057114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	18	19	0	ENST00000399503.3:c.394G>C	p.Asp132His	p.D132H	ENST00000399503	NM_005921.1	132	Gac/Cac																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419997	152419997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	167	768	0	ENST00000206249.3:c.1684G>A	p.Glu562Lys	p.E562K	ENST00000206249	NM_000125.3	562	Gag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141405	11141405	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0057114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	353	745	0	ENST00000344626.4:c.3383-1G>A		p.X1128_splice	ENST00000344626	NM_003072.3	1128																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31423003	31423003	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1119	242	452	0	ENST00000344624.3:c.3310C>G	p.Leu1104Val	p.L1104V	ENST00000344624		1104	Cta/Gta																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867458	35867458	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	120	320	0	ENST00000303115.3:c.272T>C	p.Ile91Thr	p.I91T	ENST00000303115	NM_002185.3	91	aTa/aCa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484160	8484160	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	332	486	0	ENST00000356435.5:c.3372T>G	p.Ile1124Met	p.I1124M	ENST00000356435		1124	atT/atG																																																																															
AR	367	MSKCC	GRCh37	X	66765115	66765115	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	135	671	0	ENST00000374690.3:c.127G>T	p.Glu43Ter	p.E43*	ENST00000374690	NM_000044.3	43	Gag/Tag																																																																															
XIAP	331	MSKCC	GRCh37	X	123034422	123034422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	76	312	0	ENST00000355640.3:c.1179G>T	p.Met393Ile	p.M393I	ENST00000355640		393	atG/atT																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152861544	152861544	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	207	732	0	ENST00000406277.2:c.208A>T	p.Ile70Phe	p.I70F	ENST00000406277	NM_152274.4	70	Att/Ttt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0057118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	41	446	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs876659675		P-0057118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	43	819	0	ENST00000269305.4:c.764T>A	p.Ile255Asn	p.I255N	ENST00000269305	NM_001126112.2	255	aTc/aAc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185165677	185165677	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753496412		P-0057118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	41	515	1	ENST00000265026.3:c.952G>A	p.Ala318Thr	p.A318T	ENST00000265026	NM_004721.4	318	Gca/Aca																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366908	15366908	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150583855		P-0057118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	64	837	2	ENST00000263377.2:c.1718C>T	p.Thr573Met	p.T573M	ENST00000263377	NM_058243.2	573	aCg/aTg																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204732753	204732753	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	51	599	0	ENST00000302823.3:c.88T>G	p.Phe30Val	p.F30V	ENST00000302823	NM_005214.4	30	Ttc/Gtc																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0057125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	222	464	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0057125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	299	570	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864368	162864368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	92	512	0	ENST00000366898.1:c.145G>A	p.Glu49Lys	p.E49K	ENST00000366898	NM_004562.2	49	Gag/Aag																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741925	17741925	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765066996		P-0057125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	77	396	0	ENST00000250003.3:c.596C>T	p.Ala199Val	p.A199V	ENST00000250003	NM_002478.4	199	gCg/gTg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279907	18279907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	129	880	0	ENST00000222254.8:c.1990G>A	p.Asp664Asn	p.D664N	ENST00000222254	NM_005027.3	664	Gac/Aac																																																																															
AKT2	208	MSKCC	GRCh37	19	40743949	40743949	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145907048		P-0057125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	151	891	2	ENST00000392038.2:c.758G>A	p.Arg253Gln	p.R253Q	ENST00000392038	NM_001626.4	253	cGg/cAg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93953157	93953157	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755519422		P-0057125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	51	333	0	ENST00000369303.4:c.2984G>A	p.Gly995Asp	p.G995D	ENST00000369303	NM_004440.3	995	gGc/gAc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953026	2953026	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747655872		P-0057125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	126	972	0	ENST00000396946.4:c.2914G>A	p.Glu972Lys	p.E972K	ENST00000396946	NM_032415.4	972	Gag/Aag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395269	139395269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	150	999	2	ENST00000277541.6:c.5669G>A	p.Cys1890Tyr	p.C1890Y	ENST00000277541	NM_017617.3	1890	tGc/tAc																																																																															
JUN	3725	MSKCC	GRCh37	1	59248071	59248097	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCTGCAGCCGCGGGTGCTGCACGGG	GGCCTGCAGCCGCGGGTGCTGCACGGG	A			P-0057125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	85	539	2	ENST00000371222.2:c.646_672delinsT	p.Pro216SerfsTer85	p.P216Sfs*85	ENST00000371222	NM_002228.3	216	CCCGTGCAGCACCCGCGGCTGCAGGCC/T																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0057130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	37	268	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602290	10602290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	55	558	0	ENST00000171111.5:c.1288G>T	p.Gly430Cys	p.G430C	ENST00000171111	NM_203500.1	430	Ggc/Tgc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375450	15375450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	86	615	0	ENST00000263377.2:c.977G>T	p.Arg326Leu	p.R326L	ENST00000263377	NM_058243.2	326	cGg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432494	49432494	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	57	532	0	ENST00000301067.7:c.8645A>T	p.His2882Leu	p.H2882L	ENST00000301067	NM_003482.3	2882	cAc/cTc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913327	32913327	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764834875		P-0057130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	52	341	0	ENST00000380152.3:c.4835C>T	p.Pro1612Leu	p.P1612L	ENST00000380152		1612	cCa/cTa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43738586	43738586	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0057130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	34	307	0	ENST00000382044.4:c.3039A>C	p.Glu1013Asp	p.E1013D	ENST00000382044	NM_001141980.1	1013	gaA/gaC																																																																															
STK11	6794	MSKCC	GRCh37	19	1223044	1223057	+	frameshift_variant	Frame_Shift_Del	DEL	CACCAAGGACCGGT	CACCAAGGACCGGT	-			P-0057130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	83	575	0	ENST00000326873.7:c.981_994del	p.Asp327GlufsTer28	p.D327Efs*28	ENST00000326873	NM_000455.4	327	gaCACCAAGGACCGGTgg/gagg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11100117	11100117	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0057130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	59	402	0	ENST00000344626.4:c.1243C>T	p.Gln415Ter	p.Q415*	ENST00000344626	NM_003072.3	415	Cag/Tag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410823	63410823	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	55	486	0	ENST00000330258.3:c.2344del	p.Leu782SerfsTer26	p.L782Sfs*26	ENST00000330258	NM_152424.3	782	Ctc/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	153	648	0	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246543	46246543	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	22	151	0	ENST00000334344.6:c.4637A>G	p.Asn1546Ser	p.N1546S	ENST00000334344	NM_152641.2	1546	aAt/aGt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143981	11143981	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	69	387	0	ENST00000344626.4:c.3562G>T	p.Asp1188Tyr	p.D1188Y	ENST00000344626	NM_003072.3	1188	Gac/Tac																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24129426	24129426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	50	344	1	ENST00000263121.7:c.70G>A	p.Glu24Lys	p.E24K	ENST00000263121	NM_003073.3	24	Gag/Aag																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29207510	29207510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	103	395	0	ENST00000240100.2:c.286C>T	p.Arg96Cys	p.R96C	ENST00000240100	NM_001394.6	96	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097790	27097790	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	52	329	0	ENST00000324856.7:c.3379C>T	p.Gln1127Ter	p.Q1127*	ENST00000324856	NM_006015.4	1127	Cag/Tag																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521591	46521591	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	58	398	0	ENST00000262741.5:c.817A>T	p.Ser273Cys	p.S273C	ENST00000262741	NM_003629.3	273	Agc/Tgc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123864	46123864	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	130	286	0	ENST00000334344.6:c.130G>T	p.Glu44Ter	p.E44*	ENST00000334344	NM_152641.2	44	Gag/Tag																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240082	41240082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	13	46	0	ENST00000379561.5:c.268G>A	p.Val90Met	p.V90M	ENST00000379561	NM_002015.3	90	Gtg/Atg																																																																															
NF1	4763	MSKCC	GRCh37	17	29556452	29556452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	38	344	0	ENST00000358273.4:c.2819C>T	p.Thr940Ile	p.T940I	ENST00000358273	NM_001042492.2	940	aCc/aTc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40384031	40384031	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	68	318	0	ENST00000293328.3:c.115G>C	p.Glu39Gln	p.E39Q	ENST00000293328	NM_012448.3	39	Gaa/Caa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10249146	10249146	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	75	569	0	ENST00000340748.4:c.4036G>C	p.Asp1346His	p.D1346H	ENST00000340748		1346	Gat/Cat																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953247	17953247	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	89	639	0	ENST00000458235.1:c.739C>G	p.Pro247Ala	p.P247A	ENST00000458235	NM_000215.3	247	Cca/Gca																																																																															
CD79A	973	MSKCC	GRCh37	19	42384956	42384956	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	70	471	0	ENST00000221972.3:c.590C>A	p.Ser197Tyr	p.S197Y	ENST00000221972	NM_021601.3	197	tCc/tAc																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47612347	47612347	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	35	306	0	ENST00000263735.4:c.901G>A	p.Glu301Lys	p.E301K	ENST00000263735	NM_002354.2	301	Gag/Aag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017140	31017140	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	25	223	2	ENST00000375687.4:c.472-1G>T		p.X158_splice	ENST00000375687	NM_015338.5	158																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56178041	56178041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	30	294	0	ENST00000399503.3:c.3014G>A	p.Arg1005Lys	p.R1005K	ENST00000399503	NM_005921.1	1005	aGa/aAa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729670	41729670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	82	520	0	ENST00000242208.4:c.859C>A	p.Gln287Lys	p.Q287K	ENST00000242208	NM_002192.2	287	Cag/Aag																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467924	50467924	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	92	424	0	ENST00000331340.3:c.1159G>T	p.Glu387Ter	p.E387*	ENST00000331340	NM_006060.4	387	Gag/Tag																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540400	23540400	+	start_lost	Translation_Start_Site	SNP	C	C	A			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	50	246	0	ENST00000380871.4:c.3G>T	p.Met1?	p.M1?	ENST00000380871	NM_006167.3	1	atG/atT																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70982062	70982062	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	63	478	0	ENST00000276594.2:c.34C>T	p.Gln12Ter	p.Q12*	ENST00000276594	NM_024504.3	12	Cag/Tag																																																																															
TEK	7010	MSKCC	GRCh37	9	27169501	27169501	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	34	405	0	ENST00000380036.4:c.502C>A	p.His168Asn	p.H168N	ENST00000380036	NM_000459.3	168	Cat/Aat																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570428	87570428	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	121	503	0	ENST00000277120.3:c.2168A>T	p.Tyr723Phe	p.Y723F	ENST00000277120		723	tAc/tTc																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139562812	139562813	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CG	CG	AT			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	53	558	0	ENST00000308874.7:c.78_79delinsAT	p.Gly27Cys	p.G27C	ENST00000308874		26	ccCGgc/ccATgc																																																																															
B2M	567	MSKCC	GRCh37	15	45003755	45003755	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TCGTGG			P-0057134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	48	367	0	ENST00000558401.1:c.11delinsTCGTGG	p.Ser4PhefsTer6	p.S4Ffs*6	ENST00000558401	NM_004048.2	4	tCc/tTCGTGGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0057137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	563	514	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720650	89720650	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs1257124719		P-0057137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	9	147	0	ENST00000371953.3:c.802-1G>A		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																																
PTEN	5728	MSKCC	GRCh37	10	89690847	89690847	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs587776667		P-0057137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	41	223	0	ENST00000371953.3:c.253+1G>T		p.X85_splice	ENST00000371953	NM_000314.4	85																																																																																
APC	324	MSKCC	GRCh37	5	112175925	112175925	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	103	150	0	ENST00000257430.4:c.4634C>A	p.Ser1545Ter	p.S1545*	ENST00000257430	NM_000038.5	1545	tCa/tAa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589282	67589285	+	frameshift_variant	Frame_Shift_Del	DEL	TTAC	TTAC	-			P-0057137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	10	199	0	ENST00000274335.5:c.1272_1275del	p.Leu424PhefsTer21	p.L424Ffs*21	ENST00000274335		424	TTACtt/tt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0057139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	66	450	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5215339	5215339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs114545401		P-0057139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	32	474	0	ENST00000357368.4:c.4279G>A	p.Ala1427Thr	p.A1427T	ENST00000357368	NM_002850.3	1427	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0057139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	58	333	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967186	134967186	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200311306		P-0057139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	48	367	0	ENST00000398015.3:c.2525G>A	p.Arg842Gln	p.R842Q	ENST00000398015	NM_004441.4	842	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0057139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	213	536	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
IDH2	3418	MSKCC	GRCh37	15	90645601	90645601	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1328301039		P-0057139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	38	151	0	ENST00000330062.3:c.22G>A	p.Val8Met	p.V8M	ENST00000330062	NM_002168.2	8	Gtg/Atg																																																																															
BRAF	673	MSKCC	GRCh37	7	140476832	140476832	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs869025340		P-0057139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	140	384	0	ENST00000288602.6:c.1574T>G	p.Leu525Arg	p.L525R	ENST00000288602	NM_004333.4	525	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0057140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	103	258	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120491662	120491663	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs312262800		P-0057140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	13	171	0	ENST00000256646.2:c.2566_2567del	p.Ser856LeufsTer17	p.S856Lfs*17	ENST00000256646	NM_024408.3	856	AGt/t																																																																															
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs397516439		P-0057140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	36	433	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
PTCH1	5727	MSKCC	GRCh37	9	98211534	98211534	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	19	469	0	ENST00000331920.6:c.3621C>A	p.Phe1207Leu	p.F1207L	ENST00000331920	NM_000264.3	1207	ttC/ttA																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857784	9857784	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145861983		P-0057147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	83	409	0	ENST00000330684.3:c.3617G>A	p.Arg1206Gln	p.R1206Q	ENST00000330684	NM_001134407.1	1206	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs786201838		P-0057147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	109	419	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085824	16085824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763830786		P-0057147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	82	364	1	ENST00000281043.3:c.1000G>A	p.Ala334Thr	p.A334T	ENST00000281043	NM_005378.4	334	Gcc/Acc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870929	12870930	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0057147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	48	218	1	ENST00000228872.4:c.156_157delinsTT	p.Met52_Glu53delinsIleTer	p.M52_E53delinsI*	ENST00000228872	NM_004064.3	52	atGGaa/atTTaa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15984032	15984032	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	42	200	0	ENST00000268712.3:c.3187G>C	p.Gly1063Arg	p.G1063R	ENST00000268712	NM_006311.3	1063	Ggc/Cgc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99193489	99193490	+	missense_variant	Missense_Mutation	DNP	GC	GC	CT			P-0057147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	54	491	1	ENST00000074304.5:c.2684_2685delinsCT	p.Cys895Ser	p.C895S	ENST00000074304	NM_001134224.1	895	tGC/tCT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161994	47161994	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0057147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	38	277	0	ENST00000409792.3:c.4132A>T	p.Lys1378Ter	p.K1378*	ENST00000409792	NM_014159.6	1378	Aag/Tag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230769	66230769	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0057147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	42	242	0	ENST00000273854.3:c.2202del	p.Asn735ThrfsTer5	p.N735Tfs*5	ENST00000273854	NM_004439.5	734	ccT/cc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044478	47044479	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0057147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	165	439	0	ENST00000329236.7:c.1744dup	p.Arg582ProfsTer13	p.R582Pfs*13	ENST00000329236	NM_001204466.1	581	gcc/gCcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0057148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	108	239	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578196	7578196	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	153	576	0	ENST00000269305.4:c.653T>A	p.Val218Glu	p.V218E	ENST00000269305	NM_001126112.2	218	gTg/gAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265718	41266423	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAG	TGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAG	-			P-0057148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	91	61	0	ENST00000349496.5:c.13+148_242-20del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0057149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	146	269	2	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0057149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	133	229	2	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912149	114912149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	295	470	6	ENST00000543371.1:c.1219C>T	p.Arg407Ter	p.R407*	ENST00000543371	NM_001198531.1	407	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0057149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	324	671	9	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
PREX2	80243	MSKCC	GRCh37	8	69020351	69020351	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201443824		P-0057149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	104	331	2	ENST00000288368.4:c.2723G>A	p.Arg908His	p.R908H	ENST00000288368	NM_024870.2	908	cGt/cAt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873017	134873017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	141	496	6	ENST00000398015.3:c.1321C>T	p.His441Tyr	p.H441Y	ENST00000398015	NM_004441.4	441	Cac/Tac																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803726	1803726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748261686		P-0057149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	359	855	10	ENST00000260795.2:c.904G>A	p.Gly302Ser	p.G302S	ENST00000260795		302	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0057162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	171	337	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs786201838		P-0057162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	400	755	1	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856469	111856469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	194	593	1	ENST00000341259.2:c.520G>A	p.Ala174Thr	p.A174T	ENST00000341259	NM_005475.2	174	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112175608	112175608	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0057162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	147	322	0	ENST00000257430.4:c.4317del	p.Pro1440HisfsTer33	p.P1440Hfs*33	ENST00000257430	NM_000038.5	1439	ccT/cc																																																																															
APC	324	MSKCC	GRCh37	5	112174282	112174282	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0057162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	100	248	0	ENST00000257430.4:c.2991T>G	p.Tyr997Ter	p.Y997*	ENST00000257430	NM_000038.5	997	taT/taG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0057163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	121	308	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0057163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	43	428	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0057163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	123	229	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473705	67473705	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	49	640	0	ENST00000327367.4:c.785A>G	p.Asp262Gly	p.D262G	ENST00000327367	NM_005902.3	262	gAc/gGc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591101	67591101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	28	197	0	ENST00000274335.5:c.1694G>A	p.Ser565Asn	p.S565N	ENST00000274335		565	aGc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0057165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	50	653	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589586	67589591	+	inframe_deletion	In_Frame_Del	DEL	ATGAAT	ATGAAT	-			P-0057165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	19	134	0	ENST00000274335.5:c.1351_1356del	p.Glu451_Tyr452del	p.E451_Y452del	ENST00000274335		450	cATGAATat/cat																																																																															
NF1	4763	MSKCC	GRCh37	17	29528428	29528428	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0057165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	37	193	0	ENST00000358273.4:c.1186-1G>C		p.X396_splice	ENST00000358273	NM_001042492.2	396																																																																																
DNMT1	1786	MSKCC	GRCh37	19	10250837	10250837	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0057165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	37	792	0	ENST00000340748.4:c.3643G>T	p.Gly1215Ter	p.G1215*	ENST00000340748		1215	Gga/Tga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15297923	15297923	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	18	983	0	ENST00000263388.2:c.1833del	p.Thr612ProfsTer4	p.T612Pfs*4	ENST00000263388	NM_000435.2	611	ggG/gg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55138647	55138647	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757211711		P-0057165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	44	419	0	ENST00000257290.5:c.1324C>T	p.Leu442Phe	p.L442F	ENST00000257290	NM_006206.4	442	Ctt/Ttt																																																																															
KDR	3791	MSKCC	GRCh37	4	55955899	55955899	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	30	404	0	ENST00000263923.4:c.3263T>C	p.Val1088Ala	p.V1088A	ENST00000263923	NM_002253.2	1088	gTc/gCc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630651	187630651	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	45	448	0	ENST00000441802.2:c.331G>C	p.Glu111Gln	p.E111Q	ENST00000441802	NM_005245.3	111	Gaa/Caa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399925	139399925	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	43	1055	0	ENST00000277541.6:c.4423del	p.Asp1475ThrfsTer105	p.D1475Tfs*105	ENST00000277541	NM_017617.3	1475	Gac/ac																																																																															
CDC73	79577	MSKCC	GRCh37	1	193107236	193107236	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	35	198	0	ENST00000367435.3:c.445G>C	p.Asp149His	p.D149H	ENST00000367435	NM_024529.4	149	Gat/Cat																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936168	71936168	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	74	581	0	ENST00000298229.2:c.140G>C	p.Arg47Pro	p.R47P	ENST00000298229	NM_001567.3	47	cGa/cCa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17118622	17118622	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	50	421	0	ENST00000285071.4:c.1309G>T	p.Val437Phe	p.V437F	ENST00000285071	NM_144997.5	437	Gtc/Ttc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599867	10599867	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0057166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	114	742	0	ENST00000171111.5:c.1708+1G>A		p.X570_splice	ENST00000171111	NM_203500.1	570																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11095023	11095023	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	132	1050	1	ENST00000344626.4:c.196C>T	p.Gln66Ter	p.Q66*	ENST00000344626	NM_003072.3	66	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0057168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	58	224	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0057168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	375	699	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944761	31944761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	64	266	0	ENST00000340398.3:c.340G>A	p.Ala114Thr	p.A114T	ENST00000340398	NM_001013699.2	114	Gct/Act																																																																															
CTCF	10664	MSKCC	GRCh37	16	67670715	67670715	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	120	497	0	ENST00000264010.4:c.1960C>T	p.Arg654Ter	p.R654*	ENST00000264010	NM_006565.3	654	Cga/Tga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099315	157099315	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs372726215		P-0057168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	86	520	1	ENST00000346085.5:c.252C>G	p.His84Gln	p.H84Q	ENST00000346085	NM_020732.3	84	caC/caG																																																																															
SMO	6608	MSKCC	GRCh37	7	128849141	128849141	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	346	693	0	ENST00000249373.3:c.1369T>C	p.Phe457Leu	p.F457L	ENST00000249373	NM_005631.4	457	Ttc/Ctc																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0057169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	23	215	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108213967	108213967	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876659872		P-0057169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	25	247	0	ENST00000278616.4:c.8287C>T	p.Arg2763Ter	p.R2763*	ENST00000278616	NM_000051.3	2763	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108121561	108121561	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs749036865		P-0057169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	40	406	0	ENST00000278616.4:c.1369C>T	p.Arg457Ter	p.R457*	ENST00000278616	NM_000051.3	457	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670256	134670256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	31	442	2	ENST00000398015.3:c.167G>A	p.Arg56His	p.R56H	ENST00000398015	NM_004441.4	56	cGc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133215817	133215817	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	130	623	0	ENST00000320574.5:c.5446A>C	p.Asn1816His	p.N1816H	ENST00000320574	NM_006231.2	1816	Aac/Cac																																																																															
ATM	472	MSKCC	GRCh37	11	108121699	108121699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	45	391	0	ENST00000278616.4:c.1507G>A	p.Glu503Lys	p.E503K	ENST00000278616	NM_000051.3	503	Gaa/Aaa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013727	12013728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0057169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	45	219	1	ENST00000353533.5:c.673dup	p.Ile225AsnfsTer20	p.I225Nfs*20	ENST00000353533	NM_003010.3	223	-/A																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0057170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	104	522	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041576	47041576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	110	622	0	ENST00000329236.7:c.1567C>T	p.Gln523Ter	p.Q523*	ENST00000329236	NM_001204466.1	523	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0057178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	102	579	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0057178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	446	1203	0	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366709	40366709	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	160	1037	2	ENST00000397332.2:c.488C>A	p.Pro163His	p.P163H	ENST00000397332	NM_001033082.2	163	cCc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0057186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	246	353	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0057186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	182	1096	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120085	70120085	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	60	69	0	ENST00000245479.2:c.1087C>T	p.Gln363Ter	p.Q363*	ENST00000245479	NM_000346.3	363	Cag/Tag																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375019	45375019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	129	397	0	ENST00000262160.6:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000262160	NM_005901.5	275	tGt/tAt																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0057186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	90	355	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs879253911		P-0057186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	229	829	1	ENST00000269305.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000269305	NM_001126112.2	180	Gag/Aag																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473692	67473692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	482	721	0	ENST00000327367.4:c.772G>A	p.Asp258Asn	p.D258N	ENST00000327367	NM_005902.3	258	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112175302	112175303	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	CT			P-0057186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	178	209	2	ENST00000257430.4:c.4011_4012delinsCT	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1337	ctGCag/ctCTag																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538990	23538990	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775943527		P-0057186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	161	724	2	ENST00000380871.4:c.449C>T	p.Ser150Leu	p.S150L	ENST00000380871	NM_006167.3	150	tCg/tTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575188	48575188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	29	279	0	ENST00000342988.3:c.382G>A	p.Val128Met	p.V128M	ENST00000342988	NM_005359.5	128	Gtg/Atg																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588885	69588885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	36	794	0	ENST00000168712.1:c.351G>T	p.Glu117Asp	p.E117D	ENST00000168712	NM_002007.2	117	gaG/gaT																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987141	36987141	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0057186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	71	1114	0	ENST00000354822.5:c.548T>G	p.Met183Arg	p.M183R	ENST00000354822	NM_001079668.2	183	aTg/aGg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858532	9858533	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0057186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	137	551	0	ENST00000330684.3:c.2868dup	p.Gly957TrpfsTer18	p.G957Wfs*18	ENST00000330684	NM_001134407.1	956	-/T																																																																															
NF1	4763	MSKCC	GRCh37	17	29556046	29556046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	109	239	0	ENST00000358273.4:c.2413G>A	p.Ala805Thr	p.A805T	ENST00000358273	NM_001042492.2	805	Gct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0057187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	99	393	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0057187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	116	789	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740620	145740620	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	167	1004	0	ENST00000428558.2:c.1397C>G	p.Pro466Arg	p.P466R	ENST00000428558	NM_004260.3	466	cCg/cGg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188187	32188187	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754712190		P-0057187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	52	685	0	ENST00000375023.3:c.1154G>A	p.Arg385His	p.R385H	ENST00000375023	NM_004557.3	385	cGc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42042646	42042647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0057187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	62	490	0	ENST00000219905.7:c.6842dup	p.Gln2282ThrfsTer14	p.Q2282Tfs*14	ENST00000219905	NM_001164273.1	2281	ata/aTta																																																																															
ATRX	546	MSKCC	GRCh37	X	76953101	76953101	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	40	446	0	ENST00000373344.5:c.212C>G	p.Ser71Cys	p.S71C	ENST00000373344	NM_000489.3	71	tCc/tGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0057194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	233	361	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0057194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	327	628	0	ENST00000269305.4:c.375+1del		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
FAT1	2195	MSKCC	GRCh37	4	187539540	187539540	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	120	357	1	ENST00000441802.2:c.8200C>A	p.Leu2734Ile	p.L2734I	ENST00000441802	NM_005245.3	2734	Ctt/Att																																																																															
TERT	7015	MSKCC	GRCh37	5	1293562	1293562	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs776712013		P-0057194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	797	1237	0	ENST00000310581.5:c.1439C>G	p.Ser480Cys	p.S480C	ENST00000310581	NM_198253.2	480	tCc/tGc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294000	1294000	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1420805598		P-0057194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	975	1241	0	ENST00000310581.5:c.1001C>T	p.Ser334Phe	p.S334F	ENST00000310581	NM_198253.2	334	tCc/tTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294550	1294550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	745	924	0	ENST00000310581.5:c.451C>T	p.His151Tyr	p.H151Y	ENST00000310581	NM_198253.2	151	Cac/Tac																																																																															
TERT	7015	MSKCC	GRCh37	5	1295417	1295417	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0057194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	155	159	0				ENST00000310581	NM_198253.2																																																																																	
NOTCH1	4851	MSKCC	GRCh37	9	139391859	139391859	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	268	1125	0	ENST00000277541.6:c.6332G>C	p.Arg2111Thr	p.R2111T	ENST00000277541	NM_017617.3	2111	aGg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0057196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	285	817	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0057196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	362	510	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1146	322	951	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																															
HRAS	3265	MSKCC	GRCh37	11	533854	533854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	326	887	0	ENST00000311189.7:c.202C>T	p.Arg68Trp	p.R68W	ENST00000311189		68	Cgg/Tgg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719382	190719382	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1016802650		P-0057198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	88	224	0	ENST00000441310.2:c.1384G>A	p.Val462Ile	p.V462I	ENST00000441310	NM_000534.4	462	Gtt/Att																																																																															
KDR	3791	MSKCC	GRCh37	4	55970867	55970867	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	158	456	0	ENST00000263923.4:c.1930G>T	p.Ala644Ser	p.A644S	ENST00000263923	NM_002253.2	644	Gct/Tct																																																																															
MET	4233	MSKCC	GRCh37	7	116411880	116411897	+	splice_region_variant,intron_variant	Splice_Region	DEL	TCTTTCTTTCTCTCTGTT	TCTTTCTTTCTCTCTGTT	-			P-0057210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	98	954	0	ENST00000397752.3:c.2888-22_2888-5del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
HNF1A	6927	MSKCC	GRCh37	12	121416728	121416728	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759053189		P-0057216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	297	832	1	ENST00000257555.6:c.157G>A	p.Gly53Ser	p.G53S	ENST00000257555		53	Ggt/Agt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482846	67482846	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	221	516	0	ENST00000327367.4:c.1250C>G	p.Pro417Arg	p.P417R	ENST00000327367	NM_005902.3	417	cCa/cGa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632559	3632559	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	184	804	0	ENST00000294008.3:c.5289G>C	p.Lys1763Asn	p.K1763N	ENST00000294008	NM_032444.2	1763	aaG/aaC																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779209	3779209	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	164	519	0	ENST00000262367.5:c.5839C>G	p.Pro1947Ala	p.P1947A	ENST00000262367	NM_004380.2	1947	Ccc/Gcc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41197788	41197788	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	232	577	0	ENST00000357654.3:c.5499del	p.Thr1834ProfsTer9	p.T1834Pfs*9	ENST00000357654	NM_007294.3	1833	gtG/gt																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736165	204736165	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0057216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	126	322	0	ENST00000302823.3:c.522del	p.Leu174PhefsTer13	p.L174Ffs*13	ENST00000302823	NM_005214.4	174	ttG/tt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180663	32180663	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	260	723	0	ENST00000375023.3:c.2464C>G	p.Gln822Glu	p.Q822E	ENST00000375023	NM_004557.3	822	Cag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0057229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	326	631	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400879	72400879	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs372543475		P-0057229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	60	248	0	ENST00000357731.5:c.292A>G	p.Lys98Glu	p.K98E	ENST00000357731	NM_173808.2	98	Aaa/Gaa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467836	99467836	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs761602465		P-0057229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	91	312	0	ENST00000268035.6:c.2705C>A	p.Thr902Lys	p.T902K	ENST00000268035	NM_000875.3	902	aCa/aAa																																																																															
TP63	8626	MSKCC	GRCh37	3	189585725	189585725	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	19	356	0	ENST00000264731.3:c.986C>G	p.Thr329Ser	p.T329S	ENST00000264731	NM_003722.4	329	aCc/aGc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867486	35867486	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs771757728		P-0057229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	54	229	0	ENST00000303115.3:c.300A>T	p.Leu100Phe	p.L100F	ENST00000303115	NM_002185.3	100	ttA/ttT																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38954859	38955688	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGAATTATGTTTTTACCTGTACTTCCAACAAATGGCAGCCTGTTTTATGGTGTACTAGTTGTCCATAAAGGTGTATAGGCAGGTAGACGTGAGGACGCTGTAATCTAGTATAATAAAGATGATTACTATATCTCTTGGCTAATTTAAATATGCTAATTAGAACAAAAGAATTTTAATAAATGTTTGATAAATAAAATTAGATACAACTCTCCAGCATAAATAAAAATATGAAAGTAACAAGGAATGAGGATTTCTCAGGTAAAATATAGGCTGGGCTTCCCTAATCCAAAATGATCCAAAATCCAAAACTTTTTGAGCACTGACATGACACTGTAAGTGGAAAATTCCACACATTAGTATTTAATGCAAACTATTTCATACAGAAAATTACTTATAACACTGCATAAAATTATGTTTAGGCTACGTGTATAAGGCGTATATGAAACAGATTAATTTCATGTTTAGACTTGGGTACCATTCCCAAGGTATCTCGTTATATATATGCAAATATTCCAAATCTGAAAAAATCTGAAATGCGAAACATTTCATCATTTTGGATAAGTGATGTTCAACCTGTAACAGTTTATCAGAGCTCAAAGTACTGGTAAGAGAATCTAGGCCTAGAAATACAGACTGGGGTGCCAGCATGGAGTATATGTGAATGCGTTATCAGTAAGGATATTCAACATGCCATGAATGCCACTGAATTTTTGAGCAATTAATGCTGCGCATTAAGATTCTTCCTATATCATGTTAGAAGCAGAATATACAAAAACTCAGAAATGTTAAAAATAATTTATGATGAACTAGTTTTAAATCTGATAACTGG	GTGAATTATGTTTTTACCTGTACTTCCAACAAATGGCAGCCTGTTTTATGGTGTACTAGTTGTCCATAAAGGTGTATAGGCAGGTAGACGTGAGGACGCTGTAATCTAGTATAATAAAGATGATTACTATATCTCTTGGCTAATTTAAATATGCTAATTAGAACAAAAGAATTTTAATAAATGTTTGATAAATAAAATTAGATACAACTCTCCAGCATAAATAAAAATATGAAAGTAACAAGGAATGAGGATTTCTCAGGTAAAATATAGGCTGGGCTTCCCTAATCCAAAATGATCCAAAATCCAAAACTTTTTGAGCACTGACATGACACTGTAAGTGGAAAATTCCACACATTAGTATTTAATGCAAACTATTTCATACAGAAAATTACTTATAACACTGCATAAAATTATGTTTAGGCTACGTGTATAAGGCGTATATGAAACAGATTAATTTCATGTTTAGACTTGGGTACCATTCCCAAGGTATCTCGTTATATATATGCAAATATTCCAAATCTGAAAAAATCTGAAATGCGAAACATTTCATCATTTTGGATAAGTGATGTTCAACCTGTAACAGTTTATCAGAGCTCAAAGTACTGGTAAGAGAATCTAGGCCTAGAAATACAGACTGGGGTGCCAGCATGGAGTATATGTGAATGCGTTATCAGTAAGGATATTCAACATGCCATGAATGCCACTGAATTTTTGAGCAATTAATGCTGCGCATTAAGATTCTTCCTATATCATGTTAGAAGCAGAATATACAAAAACTCAGAAATGTTAAAAATAATTTATGATGAACTAGTTTTAAATCTGATAACTGG	-			P-0057229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	38	140	0	ENST00000357387.3:c.2609+9_2697+17del		p.X870_splice	ENST00000357387	NM_152756.3	870																																																																																
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520009		P-0057230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	25	341	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821810	72821811	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GACC			P-0057230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	52	474	0	ENST00000268489.5:c.10364_10365insGGTC	p.Phe3456ValfsTer116	p.F3456Vfs*116	ENST00000268489	NM_006885.3	3455	ccc/ccGGTCc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146524	185146524	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0057230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	41	399	0	ENST00000265026.3:c.155T>C	p.Val52Ala	p.V52A	ENST00000265026	NM_004721.4	52	gTa/gCa																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0057231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	59	238	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455090	50455090	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0057231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	39	286	0	ENST00000331340.3:c.637C>T	p.Arg213Ter	p.R213*	ENST00000331340	NM_006060.4	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs760043106		P-0057231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	146	591	0	ENST00000269305.4:c.584T>G	p.Ile195Ser	p.I195S	ENST00000269305	NM_001126112.2	195	aTc/aGc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120192	70120193	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0057231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	487	441	0	ENST00000245479.2:c.1195_1196dup	p.Glu400ArgfsTer4	p.E400Rfs*4	ENST00000245479	NM_000346.3	398	-/AC																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998191	169998191	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0057231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	57	402	0	ENST00000295797.4:c.882G>T	p.Glu294Asp	p.E294D	ENST00000295797	NM_002740.5	294	gaG/gaT																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805360	32805360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0057231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	57	450	0	ENST00000374899.4:c.562G>A	p.Ala188Thr	p.A188T	ENST00000374899	NM_018833.2	188	Gcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0057273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	129	446	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	233	728	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	115	373	0	ENST00000304494.5:c.242C>A	p.Pro81His	p.P81H	ENST00000304494	NM_000077.4	81	cCc/cAc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332591	70332591	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0057273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	126	462	0	ENST00000373644.4:c.496C>G	p.Leu166Val	p.L166V	ENST00000373644	NM_030625.2	166	Ctt/Gtt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10251479	10251479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	187	612	0	ENST00000340748.4:c.3453G>T	p.Leu1151Phe	p.L1151F	ENST00000340748		1151	ttG/ttT																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713251	30713251	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	200	365	0	ENST00000359013.4:c.652del	p.Arg218GlyfsTer5	p.R218Gfs*5	ENST00000359013	NM_001024847.2	217	aaC/aa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528627	89528627	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0057273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	54	174	0	ENST00000336596.2:c.2927del	p.Ser976Ter	p.S976*	ENST00000336596	NM_005233.5	976	tCa/ta																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0054722-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			230	27	360	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604701	48604701	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054722-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			228	22	398	0	ENST00000342988.3:c.1523G>T	p.Gly508Val	p.G508V	ENST00000342988	NM_005359.5	508	gGc/gTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575103	48575103	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs876660079		P-0054722-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			156	78	386	0	ENST00000342988.3:c.297G>A	p.Trp99Ter	p.W99*	ENST00000342988	NM_005359.5	99	tgG/tgA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCACGG			P-0054722-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			259	136	574	0	ENST00000275493.2:c.2302_2303insCGGTGGCCA	p.Ala767_Ser768insThrValAla	p.A767_S768insTVA	ENST00000275493	NM_005228.3	766	atg/aTGGCCACGGtg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480343	89480343	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054722-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			274	19	294	0	ENST00000336596.2:c.2180T>G	p.Leu727Arg	p.L727R	ENST00000336596	NM_005233.5	727	cTt/cGt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592119	67592120	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0056842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	87	264	0	ENST00000274335.5:c.1937_1938del	p.Phe646SerfsTer7	p.F646Sfs*7	ENST00000274335		645	acTTtt/actt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914430	32914430	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	16	432	0	ENST00000380152.3:c.5938A>G	p.Thr1980Ala	p.T1980A	ENST00000380152		1980	Aca/Gca																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068967	30068967	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0056842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	80	510	0	ENST00000331968.5:c.1962A>T	p.Arg654Ser	p.R654S	ENST00000331968	NM_002742.2	654	agA/agT																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061706	38061706	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	310	579	0	ENST00000250448.2:c.283del	p.Ser95AlafsTer2	p.S95Afs*2	ENST00000250448	NM_004496.3	95	Agc/gc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775623976		P-0056843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	38	278	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0056843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	124	400	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs757274881		P-0056843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	241	1417	1	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619446	1619446	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0056843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	83	1186	0	ENST00000344749.5:c.1195G>T	p.Glu399Ter	p.E399*	ENST00000344749	NM_001136139.2	399	Gag/Tag																																																																															
MET	4233	MSKCC	GRCh37	7	116398652	116398652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	46	337	0	ENST00000397752.3:c.2242C>T	p.His748Tyr	p.H748Y	ENST00000397752	NM_000245.2	748	Cat/Tat																																																																															
BTK	695	MSKCC	GRCh37	X	100611803	100611803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	99	222	0	ENST00000308731.7:c.1318G>A	p.Asp440Asn	p.D440N	ENST00000308731	NM_000061.2	440	Gat/Aat																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138902	64138905	+	missense_variant	Missense_Mutation	ONP	GCCT	GCCT	ACCG			P-0056843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	49	646	0	ENST00000334205.4:c.2269_2272delinsACCG	p.Ala757_Ser758delinsThrAla	p.A757_S758delinsTA	ENST00000334205	NM_003942.2	757	GCCTcc/ACCGcc																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0056844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	13	118	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99452077	99452077	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1441621301		P-0056844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	42	265	0	ENST00000268035.6:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000268035	NM_000875.3	471	Cgc/Tgc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281360	49281360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201503697		P-0056844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	199	787	0	ENST00000282018.3:c.407G>A	p.Arg136His	p.R136H	ENST00000282018	NM_020377.2	136	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579360	7579361	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0056844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	124	835	0	ENST00000269305.4:c.326dup	p.Arg110ProfsTer39	p.R110Pfs*39	ENST00000269305	NM_001126112.2	109	ttc/ttTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260896	16260896	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	68	510	0	ENST00000375759.3:c.8161G>T	p.Ala2721Ser	p.A2721S	ENST00000375759	NM_015001.2	2721	Gcc/Tcc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004988	16004988	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	112	642	0	ENST00000268712.3:c.2266A>G	p.Thr756Ala	p.T756A	ENST00000268712	NM_006311.3	756	Acc/Gcc																																																																															
EP300	2033	MSKCC	GRCh37	22	41566436	41566436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	56	229	0	ENST00000263253.7:c.4313G>A	p.Cys1438Tyr	p.C1438Y	ENST00000263253	NM_001429.3	1438	tGt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112175549	112175549	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	300	389	0	ENST00000257430.4:c.4258C>G	p.Pro1420Ala	p.P1420A	ENST00000257430	NM_000038.5	1420	Ccc/Gcc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206650075	206650075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	617	979	0	ENST00000367120.3:c.595G>A	p.Gly199Arg	p.G199R	ENST00000367120	NM_014002.3	199	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs764146326		P-0056851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	791	1005	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324681	31324681	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0056851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	120	658	0	ENST00000412585.2:c.127G>T	p.Glu43Ter	p.E43*	ENST00000412585	NM_005514.6	43	Gag/Tag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2985543	2985543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	285	585	0	ENST00000396946.4:c.268G>T	p.Val90Phe	p.V90F	ENST00000396946	NM_032415.4	90	Gtc/Ttc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639506	3639506	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371580654		P-0056851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	839	1240	0	ENST00000294008.3:c.4133C>T	p.Pro1378Leu	p.P1378L	ENST00000294008	NM_032444.2	1378	cCg/cTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913694	32913724	+	frameshift_variant	Frame_Shift_Del	DEL	AAAACAAGATACTTATTTAAGTAACAGTAGC	AAAACAAGATACTTATTTAAGTAACAGTAGC	-			P-0056851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	38	392	0	ENST00000380152.3:c.5203_5233del	p.Lys1735CysfsTer32	p.K1735Cfs*32	ENST00000380152		1734	gaAAAACAAGATACTTATTTAAGTAACAGTAGC/ga																																																																															
APC	324	MSKCC	GRCh37	5	112170753	112170753	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	286	663	0	ENST00000257430.4:c.1849G>C	p.Val617Leu	p.V617L	ENST00000257430	NM_000038.5	617	Gtt/Ctt																																																																															
MYC	4609	MSKCC	GRCh37	8	128751051	128751066	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCGCCGCCGCCTCA	GAGCGCCGCCGCCTCA	-			P-0056851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1843	458	775	0	ENST00000377970.2:c.591_606del	p.Ala199SerfsTer145	p.A199Sfs*145	ENST00000377970	NM_002467.4	196	ctGAGCGCCGCCGCCTCA/ct																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0056855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	47	523	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578281	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGAGG	GAGGAGG	-			P-0056855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	126	1003	0	ENST00000269305.4:c.568_574del	p.Pro190SerfsTer55	p.P190Sfs*55	ENST00000269305	NM_001126112.2	190	CCTCCTCag/ag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492851	56492852	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0056855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	50	641	0	ENST00000407977.2:c.87_88insAA	p.Leu30AsnfsTer22	p.L30Nfs*22	ENST00000407977		29	-/AA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034721-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			344	89	315	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034721-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			402	62	391	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934571		P-0034721-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			406	191	527	1	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
RB1	5925	MSKCC	GRCh37	13	48942685	48942685	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913301		P-0034721-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			182	67	274	0	ENST00000267163.4:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000267163	NM_000321.2	358	Cga/Tga																																																																															
FANCA	2175	MSKCC	GRCh37	16	89815072	89815072	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868782409		P-0034721-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			625	88	455	0	ENST00000389301.3:c.3343G>A	p.Glu1115Lys	p.E1115K	ENST00000389301	NM_000135.2	1115	Gag/Aag																																																																															
TET1	80312	MSKCC	GRCh37	10	70446161	70446161	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034721-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			445	62	374	0	ENST00000373644.4:c.5101C>T	p.Gln1701Ter	p.Q1701*	ENST00000373644	NM_030625.2	1701	Caa/Taa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138122	64138122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034721-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			738	49	600	0	ENST00000334205.4:c.2045C>T	p.Ser682Leu	p.S682L	ENST00000334205	NM_003942.2	682	tCg/tTg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546700	9546700	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034721-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			472	103	359	0	ENST00000353224.5:c.1322G>T	p.Ser441Ile	p.S441I	ENST00000353224	NM_177990.2	441	aGc/aTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255503	16255503	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034721-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			485	147	401	0	ENST00000375759.3:c.2768A>C	p.Glu923Ala	p.E923A	ENST00000375759	NM_015001.2	923	gAg/gCg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115276714	115276714	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034721-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			304	71	265	0	ENST00000438362.2:c.745G>T	p.Gly249Cys	p.G249C	ENST00000438362	NM_001242891.1	249	Ggt/Tgt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56490313	56490313	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034721-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			439	31	321	0	ENST00000267101.3:c.2082G>C	p.Glu694Asp	p.E694D	ENST00000267101	NM_001982.3	694	gaG/gaC																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33430518	33430518	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034721-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			663	194	594	0	ENST00000335858.7:c.286G>T	p.Val96Phe	p.V96F	ENST00000335858	NM_133629.2	96	Gtc/Ttc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59821829	59821829	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034721-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			424	118	428	0	ENST00000259008.2:c.2221G>T	p.Val741Leu	p.V741L	ENST00000259008	NM_032043.2	741	Gtg/Ttg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100956	41100956	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034721-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			807	170	576	0	ENST00000373198.4:c.1400C>G	p.Pro467Arg	p.P467R	ENST00000373198	NM_133170.3	467	cCc/cGc																																																																															
EP300	2033	MSKCC	GRCh37	22	41547856	41547856	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034721-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			314	135	359	0	ENST00000263253.7:c.2837G>T	p.Ser946Ile	p.S946I	ENST00000263253	NM_001429.3	946	aGc/aTc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143067061	143067061	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034721-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			423	68	380	0	ENST00000262992.4:c.1652G>C	p.Gly551Ala	p.G551A	ENST00000262992	NM_001101669.1	551	gGc/gCc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168483	56168483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034721-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			290	50	196	0	ENST00000399503.3:c.1439G>A	p.Arg480Lys	p.R480K	ENST00000399503	NM_005921.1	480	aGa/aAa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043963	180043963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034721-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			503	182	646	0	ENST00000261937.6:c.3033G>T	p.Met1011Ile	p.M1011I	ENST00000261937	NM_182925.4	1011	atG/atT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120660	94120660	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034721-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			406	105	347	0	ENST00000369303.4:c.391G>T	p.Asp131Tyr	p.D131Y	ENST00000369303	NM_004440.3	131	Gac/Tac																																																																															
PARK2	5071	MSKCC	GRCh37	6	161771211	161771211	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034721-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			524	302	474	0	ENST00000366898.1:c.1318C>G	p.Gln440Glu	p.Q440E	ENST00000366898	NM_004562.2	440	Cag/Gag																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246670476	246670476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	16	578	0	ENST00000388985.4:c.44G>A	p.Gly15Glu	p.G15E	ENST00000388985		15	gGa/gAa																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246670501	246670501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	13	546	0	ENST00000388985.4:c.19G>A	p.Glu7Lys	p.E7K	ENST00000388985		7	Gaa/Aaa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330629	65330630	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0056416-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			442	43	301	0	ENST00000342505.4:c.1016dup	p.Asn339LysfsTer2	p.N339Kfs*2	ENST00000342505	NM_002227.2	339	aat/aaAt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115975	8115975	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056416-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			298	147	357	0	ENST00000346208.3:c.1321del	p.Ala441ProfsTer34	p.A441Pfs*34	ENST00000346208		441	Gcc/cc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217867	7217871	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTT	CTGTT	-			P-0056416-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			509	74	498	0	ENST00000380728.2:c.140_144del	p.Glu47GlyfsTer48	p.E47Gfs*48	ENST00000380728		47	gAACAG/g																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31511261	31511261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056416-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			596	127	503	0	ENST00000344624.3:c.1313C>T	p.Thr438Met	p.T438M	ENST00000344624		438	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0056419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			527	11	319	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0056640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	365	722	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533054	63533054	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	141	680	0	ENST00000307078.5:c.1840G>C	p.Asp614His	p.D614H	ENST00000307078	NM_004655.3	614	Gac/Cac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396734	139396734	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771399165		P-0056640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	191	635	1	ENST00000277541.6:c.5374G>A	p.Val1792Met	p.V1792M	ENST00000277541	NM_017617.3	1792	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112174784	112174784	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0056644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	26	228	0	ENST00000257430.4:c.3493A>T	p.Lys1165Ter	p.K1165*	ENST00000257430	NM_000038.5	1165	Aaa/Taa																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519946		P-0056644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	157	576	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129884	55129884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs574683248		P-0056644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	106	497	1	ENST00000257290.5:c.418G>A	p.Val140Met	p.V140M	ENST00000257290	NM_006206.4	140	Gtg/Atg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913237		P-0056644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	104	299	0	ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	95	245	0	ENST00000342988.3:c.1255G>A	p.Gly419Arg	p.G419R	ENST00000342988	NM_005359.5	419	Ggg/Agg																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0056644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	49	248	0	ENST00000257430.4:c.4473dup	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453150	140453150	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs121913341		P-0056644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	71	251	0	ENST00000288602.6:c.1785T>G	p.Phe595Leu	p.F595L	ENST00000288602	NM_004333.4	595	ttT/ttG																																																																															
ATM	472	MSKCC	GRCh37	11	108170464	108170464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	47	234	0	ENST00000278616.4:c.5029G>A	p.Glu1677Lys	p.E1677K	ENST00000278616	NM_000051.3	1677	Gaa/Aaa																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551457	150551457	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	253	729	0	ENST00000369026.2:c.550C>G	p.Arg184Gly	p.R184G	ENST00000369026	NM_021960.4	184	Cgg/Ggg																																																																															
NF1	4763	MSKCC	GRCh37	17	29670099	29670099	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	177	324	0	ENST00000358273.4:c.7135G>T	p.Gly2379Ter	p.G2379*	ENST00000358273	NM_001042492.2	2379	Gga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361232	66361232	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	70	249	0	ENST00000273854.3:c.940C>A	p.Pro314Thr	p.P314T	ENST00000273854	NM_004439.5	314	Cct/Act																																																																															
MAX	4149	MSKCC	GRCh37	14	65560460	65560461	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0056647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	207	348	0	ENST00000358664.4:c.136_137del	p.Leu46AlafsTer40	p.L46Afs*40	ENST00000358664	NM_002382.4	46	TTg/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7578480	7578498	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGGAATCAACCCACAGC	TGTGGAATCAACCCACAGC	-			P-0056647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	416	736	0	ENST00000269305.4:c.432_450del	p.Gln144HisfsTer20	p.Q144Hfs*20	ENST00000269305	NM_001126112.2	144	caGCTGTGGGTTGATTCCACA/ca																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15971261	15971261	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0056647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	234	378	0	ENST00000268712.3:c.4688A>T	p.His1563Leu	p.H1563L	ENST00000268712	NM_006311.3	1563	cAc/cTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692896	89692896	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	AG			P-0056647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	172	335	0	ENST00000371953.3:c.379_380insA	p.Gly127GlufsTer53	p.G127Efs*53	ENST00000371953	NM_000314.4	127	gGa/gAGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0056682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	36	583	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711945	89711946	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAGAC			P-0056682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	14	373	1	ENST00000371953.3:c.564_568dup	p.Pro190LeufsTer11	p.P190Lfs*11	ENST00000371953	NM_000314.4	188	tat/taTAGACt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554712	63554712	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	48	443	0	ENST00000307078.5:c.27C>A	p.Cys9Ter	p.C9*	ENST00000307078	NM_004655.3	9	tgC/tgA																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733335	85733335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	77	341	0	ENST00000370580.1:c.677G>T	p.Arg226Ile	p.R226I	ENST00000370580	NM_003921.4	226	aGa/aTa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484427	57484427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	102	579	0	ENST00000371085.3:c.608T>C	p.Leu203Pro	p.L203P	ENST00000371085	NM_000516.4	203	cTg/cCg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0056544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	94	522	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0056544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	52	562	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943662	9943662	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs560839364		P-0056544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	118	702	0	ENST00000330684.3:c.1279G>A	p.Glu427Lys	p.E427K	ENST00000330684	NM_001134407.1	427	Gag/Aag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017824	31017824	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs576523117		P-0056544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	64	814	0	ENST00000375687.4:c.686C>T	p.Pro229Leu	p.P229L	ENST00000375687	NM_015338.5	229	cCg/cTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179441	56179441	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	49	257	0	ENST00000399503.3:c.3754G>C	p.Gly1252Arg	p.G1252R	ENST00000399503	NM_005921.1	1252	Gga/Cga																																																																															
APC	324	MSKCC	GRCh37	5	112173324	112173332	+	inframe_deletion	In_Frame_Del	DEL	GTAATGCAT	GTAATGCAT	-			P-0056544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	30	260	0	ENST00000257430.4:c.2035_2043del	p.Asn679_Cys681del	p.N679_C681del	ENST00000257430	NM_000038.5	678	aGTAATGCATgt/agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540652		P-0056660-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			544	43	612	1	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729097	66729102	+	inframe_deletion	In_Frame_Del	DEL	AGATCA	AGATCA	-			P-0056660-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			456	51	497	0	ENST00000307102.5:c.306_311del	p.Ile103_Lys104del	p.I103_K104del	ENST00000307102	NM_002755.3	102	gAGATCAaa/gaa																																																																															
STK11	6794	MSKCC	GRCh37	19	1219359	1219360	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0056660-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			534	30	740	1	ENST00000326873.7:c.411_412delinsTT	p.Gln137_Glu138delinsHisTer	p.Q137_E138delinsH*	ENST00000326873	NM_000455.4	137	caGGaa/caTTaa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81941372	81941372	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0056660-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	49	505	0	ENST00000359376.3:c.1550T>A	p.Val517Glu	p.V517E	ENST00000359376	NM_002661.3	517	gTg/gAg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955220	17955220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056660-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			546	29	699	0	ENST00000458235.1:c.7C>T	p.Pro3Ser	p.P3S	ENST00000458235	NM_000215.3	3	Cct/Tct																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0056724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	348	700	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913381		P-0056724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	56	737	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259139	36259139	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0056724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	160	781	1	ENST00000300305.3:c.351+1G>T		p.X117_splice	ENST00000300305		117																																																																																
DOT1L	84444	MSKCC	GRCh37	19	2227019	2227019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	189	839	3	ENST00000398665.3:c.4499C>T	p.Ser1500Phe	p.S1500F	ENST00000398665	NM_032482.2	1500	tCt/tTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29585494	29585494	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	50	262	0	ENST00000358273.4:c.4306G>T	p.Glu1436Ter	p.E1436*	ENST00000358273	NM_001042492.2	1436	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578462	7578467	+	inframe_deletion	In_Frame_Del	DEL	GCGGGT	GCGGGT	-			P-0056724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	225	1029	0	ENST00000269305.4:c.463_468del	p.Thr155_Arg156del	p.T155_R156del	ENST00000269305	NM_001126112.2	155	ACCCGC/-																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781241	135781241	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	89	743	0	ENST00000298552.3:c.1724C>G	p.Ser575Cys	p.S575C	ENST00000298552	NM_001162426.1	575	tCt/tGt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53240000	53240011	+	inframe_deletion	In_Frame_Del	DEL	CCGGCATCACAT	CCGGCATCACAT	-			P-0056724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	75	863	0	ENST00000375401.3:c.1430_1441del	p.Asn477_Val481delinsMet	p.N477_V481delinsM	ENST00000375401	NM_004187.3	477	aATGTGATGCCGGtg/atg																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813396	102813396	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1316717107		P-0056747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	80	607	1	ENST00000307046.8:c.293G>A	p.Arg98Gln	p.R98Q	ENST00000307046	NM_001111285.1	98	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578266	7578285	+	frameshift_variant	Frame_Shift_Del	DEL	TAAGATGCTGAGGAGGGGCC	TAAGATGCTGAGGAGGGGCC	-			P-0056747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	88	682	0	ENST00000269305.4:c.564_583del	p.Ala189ProfsTer13	p.A189Pfs*13	ENST00000269305	NM_001126112.2	188	ctGGCCCCTCCTCAGCATCTTAtc/cttc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0056747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	203	779	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
STK11	6794	MSKCC	GRCh37	19	1222983	1222983	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0056747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	70	594	1	ENST00000326873.7:c.921-1G>A		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15272414	15272414	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151322770		P-0056747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1296	123	1075	0	ENST00000263388.2:c.6025C>T	p.Arg2009Trp	p.R2009W	ENST00000263388	NM_000435.2	2009	Cgg/Tgg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354010	15354010	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1458261626		P-0056747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	33	317	0	ENST00000263377.2:c.2870C>T	p.Pro957Leu	p.P957L	ENST00000263377	NM_058243.2	957	cCc/cTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228064	36228064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	107	810	1	ENST00000222270.7:c.7450C>T	p.Arg2484Cys	p.R2484C	ENST00000222270	NM_014727.1	2484	Cgt/Tgt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288803	33288803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	43	550	1	ENST00000374542.5:c.749G>A	p.Gly250Asp	p.G250D	ENST00000374542	NM_001141970.1	250	gGc/gAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0056749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	240	358	7	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
APC	324	MSKCC	GRCh37	5	112175240	112175240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	121	215	0	ENST00000257430.4:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000257430	NM_000038.5	1317	Gaa/Taa																																																																															
TEK	7010	MSKCC	GRCh37	9	27228298	27228298	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	190	433	0	ENST00000380036.4:c.3295C>T	p.Arg1099Ter	p.R1099*	ENST00000380036	NM_000459.3	1099	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108170471	108170471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	86	300	1	ENST00000278616.4:c.5036G>A	p.Gly1679Asp	p.G1679D	ENST00000278616	NM_000051.3	1679	gGt/gAt																																																																															
ATM	472	MSKCC	GRCh37	11	108201102	108201102	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0056749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	115	302	0	ENST00000278616.4:c.7469T>G	p.Leu2490Arg	p.L2490R	ENST00000278616	NM_000051.3	2490	cTc/cGc																																																																															
APC	324	MSKCC	GRCh37	5	112174165	112174165	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	108	273	0	ENST00000257430.4:c.2874del	p.Arg958SerfsTer7	p.R958Sfs*7	ENST00000257430	NM_000038.5	958	agA/ag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229252	36229252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1160	372	790	4	ENST00000222270.7:c.7942G>A	p.Ala2648Thr	p.A2648T	ENST00000222270	NM_014727.1	2648	Gcc/Acc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5050770	5050770	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	197	379	0	ENST00000381652.3:c.553G>C	p.Asp185His	p.D185H	ENST00000381652	NM_004972.3	185	Gat/Cat																																																																															
CDK4	1019	MSKCC	GRCh37	12	58144488	58144488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	174	353	0	ENST00000257904.6:c.583G>A	p.Val195Met	p.V195M	ENST00000257904	NM_000075.3	195	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579357	7579359	+	frameshift_variant	Frame_Shift_Del	DEL	ACG	ACG	CC			P-0056750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	377	758	1	ENST00000269305.4:c.328_330delinsGG	p.Arg110GlyfsTer13	p.R110Gfs*13	ENST00000269305	NM_001126112.2	110	CGT/GG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0034085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	108	279	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0034085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			441	157	556	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			230	8	345	0	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78796099	78796122	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGGTGAGGCGCGGGCCGGGCCTT	GGGGTGAGGCGCGGGCCGGGCCTT	-			P-0034085-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			455	93	491	1	ENST00000306801.3:c.991+2_991+25del		p.X331_splice	ENST00000306801	NM_020761.2	331																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27106916	27106917	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0052607-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			625	36	578	0	ENST00000324856.7:c.6532dup	p.Asp2178GlyfsTer47	p.D2178Gfs*47	ENST00000324856	NM_006015.4	2176	cag/caGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0056458-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			220	150	287	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0056458-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			668	149	598	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111498	8111498	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0056458-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			388	260	751	0	ENST00000346208.3:c.984G>A	p.Trp328Ter	p.W328*	ENST00000346208		328	tgG/tgA																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15978945	15978945	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056458-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			188	271	522	0	ENST00000268712.3:c.3573del	p.Ile1192LeufsTer52	p.I1192Lfs*52	ENST00000268712	NM_006311.3	1191	ccC/cc																																																																															
CCND3	896	MSKCC	GRCh37	6	41909233	41909233	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056458-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			509	169	820	0	ENST00000372991.4:c.155T>C	p.Ile52Thr	p.I52T	ENST00000372991	NM_001760.3	52	aTc/aCc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109795	115109795	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	CTC			P-0056458-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			169	516	837	0	ENST00000257566.3:c.2083delinsGAG	p.Arg695GlufsTer195	p.R695Efs*195	ENST00000257566	NM_016569.3	695	Cgc/GAGgc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	57	348	2	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	20	448	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	56	476	3	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	45	860	1	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																															
APC	324	MSKCC	GRCh37	5	112111327	112111327	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	18	164	0	ENST00000257430.4:c.424T>C	p.Ser142Pro	p.S142P	ENST00000257430	NM_000038.5	142	Tca/Cca																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131402	17131402	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs398124537		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	43	852	2	ENST00000285071.4:c.50G>A	p.Arg17His	p.R17H	ENST00000285071	NM_144997.5	17	cGc/cAc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481857	56481857	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519817		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	60	781	0	ENST00000267101.3:c.785C>A	p.Pro262His	p.P262H	ENST00000267101	NM_001982.3	262	cCt/cAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	140	709	0	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	79	376	1	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934126	39934127	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	54	428	0	ENST00000378444.4:c.472dup	p.Ser158LysfsTer28	p.S158Kfs*28	ENST00000378444	NM_001123385.1	158	agt/aAgt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	141	917	0	ENST00000407977.2:c.349del	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274911	41274911	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	84	405	0	ENST00000349496.5:c.1161T>G	p.Asn387Lys	p.N387K	ENST00000349496	NM_001904.3	387	aaT/aaG																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs758630849		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	43	575	1	ENST00000305921.3:c.1349del	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	74	588	4	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
POLE	5426	MSKCC	GRCh37	12	133235927	133235927	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149777592		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	92	766	1	ENST00000320574.5:c.3229C>T	p.Arg1077Cys	p.R1077C	ENST00000320574	NM_006231.2	1077	Cgc/Tgc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	75	458	3	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2108788	2108788	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	119	835	3	ENST00000219476.3:c.894del	p.Phe298LeufsTer65	p.F298Lfs*65	ENST00000219476	NM_000548.3	297	Ttt/tt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	194	527	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	117	439	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187516905	187516905	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377350329		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	51	619	0	ENST00000441802.2:c.13076G>A	p.Arg4359Gln	p.R4359Q	ENST00000441802	NM_005245.3	4359	cGg/cAg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162737052	162737052	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765973930		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	110	521	0	ENST00000367921.3:c.1196G>A	p.Arg399Gln	p.R399Q	ENST00000367921	NM_006182.2	399	cGg/cAg																																																																															
ATR	545	MSKCC	GRCh37	3	142261555	142261555	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	57	335	0	ENST00000350721.4:c.3402del	p.Phe1134LeufsTer6	p.F1134Lfs*6	ENST00000350721	NM_001184.3	1134	ttT/tt																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46511629	46511629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	37	466	0	ENST00000262741.5:c.1148G>A	p.Arg383His	p.R383H	ENST00000262741	NM_003629.3	383	cGt/cAt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647028	23647028	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	112	787	0	ENST00000261584.4:c.839del	p.Asn280ThrfsTer8	p.N280Tfs*8	ENST00000261584	NM_024675.3	280	aAc/ac																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686901	37686901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	74	648	1	ENST00000447079.4:c.3810del	p.Gly1271AspfsTer23	p.G1271Dfs*23	ENST00000447079	NM_015083.1	1269	Ccc/cc																																																																															
PARP1	142	MSKCC	GRCh37	1	226567646	226567647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1159330096		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	37	684	1	ENST00000366794.5:c.1519dup	p.Ser507LysfsTer14	p.S507Kfs*14	ENST00000366794	NM_001618.3	507	agc/aAgc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106515198	106515198	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146675267		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	68	436	0	ENST00000359195.3:c.2341G>A	p.Glu781Lys	p.E781K	ENST00000359195	NM_002649.2	781	Gaa/Aaa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729601	41729601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	91	669	0	ENST00000242208.4:c.928C>T	p.Arg310Trp	p.R310W	ENST00000242208	NM_002192.2	310	Cgg/Tgg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56872937	56872937	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	23	381	0	ENST00000308159.5:c.2097del	p.Phe699LeufsTer19	p.F699Lfs*19	ENST00000308159	NM_014669.4	698	Ttt/tt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612209	1612209	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs915880927		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	36	582	0	ENST00000344749.5:c.1810C>T	p.Arg604Ter	p.R604*	ENST00000344749	NM_001136139.2	604	Cga/Tga																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856365	111856365	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750857643		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	23	110	0	ENST00000341259.2:c.416G>A	p.Arg139His	p.R139H	ENST00000341259	NM_005475.2	139	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	55	368	0	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221206	5221206	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200191658		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	162	937	1	ENST00000357368.4:c.3260C>T	p.Thr1087Met	p.T1087M	ENST00000357368	NM_002850.3	1087	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993013	72993014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1189	66	1124	0	ENST00000268489.5:c.1031dup	p.Asn344LysfsTer13	p.N344Kfs*13	ENST00000268489	NM_006885.3	344	aac/aaAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346157	89346158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	20	469	0	ENST00000301030.4:c.6792dup	p.Ala2265ArgfsTer8	p.A2265Rfs*8	ENST00000301030	NM_001256183.1	2264	-/C																																																																															
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	C			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	57	522	0	ENST00000558401.1:c.1A>C	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Ctg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405201	139405201	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767886377		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	59	1099	2	ENST00000277541.6:c.2644G>A	p.Ala882Thr	p.A882T	ENST00000277541	NM_017617.3	882	Gca/Aca																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526976	31526976	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1485879154		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	144	795	1	ENST00000344624.3:c.64C>T	p.Arg22Ter	p.R22*	ENST00000344624		22	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	64	1215	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670340	134670340	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1415689583		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	58	539	0	ENST00000398015.3:c.251G>A	p.Arg84His	p.R84H	ENST00000398015	NM_004441.4	84	cGc/cAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2124310	2124310	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs936484229		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	188	1135	1	ENST00000219476.3:c.2465C>T	p.Ala822Val	p.A822V	ENST00000219476	NM_000548.3	822	gCg/gTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	128	718	4	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3832811	3832811	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	94	647	1	ENST00000262367.5:c.1447C>T	p.Arg483Ter	p.R483*	ENST00000262367	NM_004380.2	483	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984559	72984559	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770062973		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	175	1025	2	ENST00000268489.5:c.3025G>A	p.Val1009Met	p.V1009M	ENST00000268489	NM_006885.3	1009	Gtg/Atg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	106	953	6	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
NCOR1	9611	MSKCC	GRCh37	17	16055259	16055259	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	44	361	0	ENST00000268712.3:c.842+1G>A		p.X281_splice	ENST00000268712	NM_006311.3	281																																																																																
AXIN2	8313	MSKCC	GRCh37	17	63533883	63533884	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	112	662	0	ENST00000307078.5:c.1270_1271del	p.Ser424ProfsTer37	p.S424Pfs*37	ENST00000307078	NM_004655.3	424	TCc/c																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98248138	98248138	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763774051		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	58	474	0	ENST00000331920.6:c.413G>A	p.Arg138His	p.R138H	ENST00000331920	NM_000264.3	138	cGt/cAt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112323	115112324	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-	rs1381943852		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	31	156	0	ENST00000257566.3:c.1416_1417del	p.Leu473ProfsTer218	p.L473Pfs*218	ENST00000257566	NM_016569.3	472	gcGCtc/gctc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356281	66356282	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	75	622	0	ENST00000273854.3:c.1215_1216del	p.Cys405Ter	p.C405*	ENST00000273854	NM_004439.5	405	tgTGag/tgag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448408	49448408	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs797045661		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	46	827	3	ENST00000301067.7:c.303del	p.Ser102AlafsTer28	p.S102Afs*28	ENST00000301067	NM_003482.3	101	ggG/gg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2951811	2951811	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146334064		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	107	724	3	ENST00000396946.4:c.3139G>A	p.Ala1047Thr	p.A1047T	ENST00000396946	NM_032415.4	1047	Gcc/Acc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245225	46245225	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs529386166		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	105	569	0	ENST00000334344.6:c.3319G>A	p.Ala1107Thr	p.A1107T	ENST00000334344	NM_152641.2	1107	Gca/Aca																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741586	17741586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	35	342	0	ENST00000250003.3:c.257G>A	p.Gly86Glu	p.G86E	ENST00000250003	NM_002478.4	86	gGg/gAg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248449	212248449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1256468343		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	49	399	0	ENST00000342788.4:c.3818G>A	p.Arg1273Gln	p.R1273Q	ENST00000342788	NM_005235.2	1273	cGg/cAg																																																																															
KIT	3815	MSKCC	GRCh37	4	55564710	55564710	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	56	537	0	ENST00000288135.5:c.598T>A	p.Phe200Ile	p.F200I	ENST00000288135	NM_000222.2	200	Ttc/Atc																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110165	8110165	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774454455		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	119	689	0	ENST00000585124.1:c.440G>A	p.Arg147Gln	p.R147Q	ENST00000585124	NM_004217.3	147	cGg/cAg																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66526441	66526441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	34	458	1	ENST00000358598.2:c.997C>T	p.Arg333Cys	p.R333C	ENST00000358598	NM_212471.2	333	Cgt/Tgt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222925	36222925	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746346674		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	85	1190	0	ENST00000222270.7:c.5554G>A	p.Ala1852Thr	p.A1852T	ENST00000222270	NM_014727.1	1852	Gcc/Acc																																																																															
KIT	3815	MSKCC	GRCh37	4	55604629	55604629	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779103998		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	137	673	0	ENST00000288135.5:c.2837G>A	p.Arg946Gln	p.R946Q	ENST00000288135	NM_000222.2	946	cGa/cAa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245132	53245133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	98	425	0	ENST00000375401.3:c.807dup	p.Thr270HisfsTer20	p.T270Hfs*20	ENST00000375401	NM_004187.3	269	-/C																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652243	36652243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs558863376		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	162	877	0	ENST00000244741.5:c.365G>A	p.Arg122His	p.R122H	ENST00000244741	NM_000389.4	122	cGc/cAc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902657	50902657	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141319800		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	54	934	2	ENST00000440232.2:c.232C>T	p.Arg78Cys	p.R78C	ENST00000440232	NM_002691.3	78	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424740	49424740	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs917419349		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	56	929	0	ENST00000301067.7:c.13607G>A	p.Arg4536Gln	p.R4536Q	ENST00000301067	NM_003482.3	4536	cGa/cAa																																																																															
POLE	5426	MSKCC	GRCh37	12	133225929	133225929	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs550525366		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	111	962	1	ENST00000320574.5:c.3968C>T	p.Ala1323Val	p.A1323V	ENST00000320574	NM_006231.2	1323	gCc/gTc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426112	47426112	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs923182352		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	55	531	1	ENST00000377045.4:c.632G>A	p.Arg211His	p.R211H	ENST00000377045	NM_001654.4	211	cGc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262714	16262714	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1022457753		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	96	465	1	ENST00000375759.3:c.9979G>A	p.Ala3327Thr	p.A3327T	ENST00000375759	NM_015001.2	3327	Gcc/Acc																																																																															
NBN	4683	MSKCC	GRCh37	8	90976638	90976638	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	46	350	0	ENST00000265433.3:c.994G>T	p.Gly332Ter	p.G332*	ENST00000265433	NM_002485.4	332	Gga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11199443	11199443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	123	672	0	ENST00000361445.4:c.5048G>A	p.Arg1683Gln	p.R1683Q	ENST00000361445	NM_004958.3	1683	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094289	27094291	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	44	400	0	ENST00000324856.7:c.3001_3003del	p.Ser1001del	p.S1001del	ENST00000324856	NM_006015.4	999	agTTCt/agt																																																																															
WT1	7490	MSKCC	GRCh37	11	32410643	32410643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	42	668	0	ENST00000332351.3:c.1515G>A	p.Met505Ile	p.M505I	ENST00000332351	NM_024426.4	505	atG/atA																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94203738	94203738	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	42	292	0	ENST00000323929.3:c.916C>T	p.Gln306Ter	p.Q306*	ENST00000323929	NM_005591.3	306	Cag/Tag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434965	110434965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	56	1009	2	ENST00000375856.3:c.3436C>T	p.Arg1146Cys	p.R1146C	ENST00000375856	NM_003749.2	1146	Cgc/Tgc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136832	2136832	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	133	909	0	ENST00000219476.3:c.4949A>G	p.Tyr1650Cys	p.Y1650C	ENST00000219476	NM_000548.3	1650	tAc/tGc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347431	89347431	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139088883		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	51	828	1	ENST00000301030.4:c.5519C>T	p.Ala1840Val	p.A1840V	ENST00000301030	NM_001256183.1	1840	gCg/gTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805046	89805046	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	58	850	0	ENST00000389301.3:c.4331del	p.Pro1444LeufsTer27	p.P1444Lfs*27	ENST00000389301	NM_000135.2	1444	cCt/ct																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217028	7217028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	40	654	0	ENST00000380728.2:c.493G>A	p.Val165Met	p.V165M	ENST00000380728		165	Gtg/Atg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108547	8108547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	47	806	1	ENST00000585124.1:c.848G>A	p.Arg283His	p.R283H	ENST00000585124	NM_004217.3	283	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223303	5223303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	97	899	0	ENST00000357368.4:c.2500G>T	p.Gly834Cys	p.G834C	ENST00000357368	NM_002850.3	834	Ggc/Tgc																																																																															
INSR	3643	MSKCC	GRCh37	19	7117422	7117422	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	37	590	0	ENST00000302850.5:c.3795-1G>A		p.X1265_splice	ENST00000302850	NM_000208.2	1265																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11145729	11145729	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	100	978	0	ENST00000344626.4:c.4091A>C	p.Glu1364Ala	p.E1364A	ENST00000344626	NM_003072.3	1364	gAg/gCg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271972	18271972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	44	398	0	ENST00000222254.8:c.575C>T	p.Ala192Val	p.A192V	ENST00000222254	NM_005027.3	192	gCc/gTc																																																																															
ERF	2077	MSKCC	GRCh37	19	42752945	42752945	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	127	1102	0	ENST00000222329.4:c.1319T>C	p.Val440Ala	p.V440A	ENST00000222329	NM_006494.2	440	gTg/gCg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637426	47637441	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAGGCTCTCCTCAT	TTGAGGCTCTCCTCAT	-			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	128	678	0	ENST00000233146.2:c.560_575del	p.Leu187ProfsTer22	p.L187Pfs*22	ENST00000233146	NM_000251.2	187	cTTGAGGCTCTCCTCATc/cc																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655273	45655273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	55	969	0	ENST00000407780.3:c.579G>A	p.Met193Ile	p.M193I	ENST00000407780	NM_001283052.1	193	atG/atA																																																																															
EP300	2033	MSKCC	GRCh37	22	41525977	41525977	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	67	451	0	ENST00000263253.7:c.1252A>G	p.Lys418Glu	p.K418E	ENST00000263253	NM_001429.3	418	Aaa/Gaa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691816	30691816	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	32	465	0	ENST00000359013.4:c.396del	p.Tyr133ThrfsTer16	p.Y133Tfs*16	ENST00000359013	NM_001024847.2	131	ctC/ct																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933692	49933692	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	110	1156	0	ENST00000296474.3:c.2585del	p.Pro862HisfsTer9	p.P862Hfs*9	ENST00000296474	NM_002447.2	862	cCa/ca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178948061	178948061	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	34	258	0	ENST00000263967.3:c.2835del	p.Phe945LeufsTer12	p.F945Lfs*12	ENST00000263967	NM_006218.2	945	Ttt/tt																																																																															
TP63	8626	MSKCC	GRCh37	3	189612207	189612208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	66	635	0	ENST00000264731.3:c.1963dup	p.Arg655ProfsTer3	p.R655Pfs*3	ENST00000264731	NM_003722.4	653	-/C																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751365	57751366	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	21	323	0	ENST00000274289.3:c.1625dup	p.Thr543AsnfsTer21	p.T543Nfs*21	ENST00000274289	NM_006622.3	542	aaa/aaAa																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911315	29911315	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17185861		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	52	693	0	ENST00000376809.5:c.614G>A	p.Arg205His	p.R205H	ENST00000376809	NM_002116.7	205	cGc/cAc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372254	55372254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	31	577	0	ENST00000297316.4:c.944C>A	p.Pro315Gln	p.P315Q	ENST00000297316	NM_022454.3	315	cCg/cAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400980	139400980	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1397249771		P-0056613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	77	663	0	ENST00000277541.6:c.4013C>T	p.Ala1338Val	p.A1338V	ENST00000277541	NM_017617.3	1338	gCg/gTg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0056619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	55	488	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs267605076		P-0056619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	26	718	0	ENST00000269305.4:c.672G>T	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaT																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864958	57864958	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	584	820	0	ENST00000228682.2:c.2435T>C	p.Val812Ala	p.V812A	ENST00000228682	NM_005269.2	812	gTg/gCg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877860	151877878	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGTTGGCACAGGTCCAG	GAAGTTGGCACAGGTCCAG	-			P-0056622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	79	422	0	ENST00000262189.6:c.7067_7085del	p.Pro2356GlnfsTer3	p.P2356Qfs*3	ENST00000262189	NM_170606.2	2356	cCTGGACCTGTGCCAACTTCa/ca																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226490	2226490	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780810017		P-0056622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	120	1076	0	ENST00000398665.3:c.3970G>A	p.Ala1324Thr	p.A1324T	ENST00000398665	NM_032482.2	1324	Gcg/Acg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78422340	78422340	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	113	338	0	ENST00000370768.2:c.1622A>G	p.Tyr541Cys	p.Y541C	ENST00000370768	NM_003902.3	541	tAc/tGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100446	8100448	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0056622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	510	986	0	ENST00000346208.3:c.420_422del	p.Leu141del	p.L141del	ENST00000346208		140	tcCTTg/tcg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115965	8115966	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0056622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	289	458	0	ENST00000346208.3:c.1312dup	p.Met438AsnfsTer69	p.M438Nfs*69	ENST00000346208		437	-/A																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4117508	4117508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	40	435	0	ENST00000262948.5:c.212A>G	p.Asp71Gly	p.D71G	ENST00000262948	NM_030662.3	71	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0056625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	125	604	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0056625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	159	746	2	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163376	47163377	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0056625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	45	234	0	ENST00000409792.3:c.2749dup	p.Ser917LysfsTer18	p.S917Kfs*18	ENST00000409792	NM_014159.6	917	agt/aAgt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522657	67522657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	33	271	0	ENST00000274335.5:c.154G>T	p.Glu52Ter	p.E52*	ENST00000274335		52	Gaa/Taa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231290	46231290	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0056625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	13	289	0	ENST00000334344.6:c.1130T>A	p.Ile377Asn	p.I377N	ENST00000334344	NM_152641.2	377	aTt/aAt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12043175	12043175	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0056625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	68	225	0	ENST00000353533.5:c.1060A>T	p.Lys354Ter	p.K354*	ENST00000353533	NM_003010.3	354	Aaa/Taa																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66522027	66522027	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	51	184	0	ENST00000358598.2:c.682C>T	p.Arg228Ter	p.R228*	ENST00000358598	NM_212471.2	228	Cga/Tga																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245080	53245080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	123	694	0	ENST00000375401.3:c.860C>T	p.Ser287Leu	p.S287L	ENST00000375401	NM_004187.3	287	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579416	7579416	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	476	799	0	ENST00000269305.4:c.271del	p.Trp91GlyfsTer32	p.W91Gfs*32	ENST00000269305	NM_001126112.2	91	Tgg/gg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856376	111856376	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1473658393		P-0056626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	33	148	0	ENST00000341259.2:c.427C>T	p.Arg143Cys	p.R143C	ENST00000341259	NM_005475.2	143	Cgc/Tgc																																																																															
HGF	3082	MSKCC	GRCh37	7	81372741	81372743	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0056626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	51	263	0	ENST00000222390.5:c.791_793del	p.Asp264del	p.D264del	ENST00000222390	NM_000601.4	264	gATGgc/ggc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0056627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	47	286	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520248	9520248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759137045		P-0056627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	42	387	0	ENST00000353224.5:c.2021G>A	p.Arg674Gln	p.R674Q	ENST00000353224	NM_177990.2	674	cGg/cAg																																																																															
MGA	23269	MSKCC	GRCh37	15	42042388	42042388	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0056627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	84	483	0	ENST00000219905.7:c.6583A>T	p.Lys2195Ter	p.K2195*	ENST00000219905	NM_001164273.1	2195	Aaa/Taa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139862	55139862	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	71	327	2	ENST00000257290.5:c.1523G>T	p.Gly508Val	p.G508V	ENST00000257290	NM_006206.4	508	gGa/gTa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041443	47041443	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0056627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	79	574	0	ENST00000329236.7:c.1551+2T>A		p.X517_splice	ENST00000329236	NM_001204466.1	517																																																																																
MST1R	4486	MSKCC	GRCh37	3	49928889	49928891	+	missense_variant	Missense_Mutation	ONP	CAC	CAC	AAA			P-0056627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	85	784	2	ENST00000296474.3:c.3475_3477delinsTTT	p.Val1159Phe	p.V1159F	ENST00000296474	NM_002447.2	1159	GTG/TTT																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9778879	9778879	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	159	1028	0	ENST00000377346.4:c.1148A>G	p.Asp383Gly	p.D383G	ENST00000377346	NM_005026.3	383	gAc/gGc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782052	9782052	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	93	947	0	ENST00000377346.4:c.2075T>G	p.Leu692Arg	p.L692R	ENST00000377346	NM_005026.3	692	cTg/cGg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782391	9782391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	181	980	1	ENST00000377346.4:c.2324G>A	p.Gly775Asp	p.G775D	ENST00000377346	NM_005026.3	775	gGc/gAc																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598336	28598336	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769442139		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	224	976	0	ENST00000253063.3:c.308C>T	p.Thr103Met	p.T103M	ENST00000253063	NM_031459.4	103	aCg/aTg																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39322698	39322698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	86	596	0	ENST00000373001.3:c.294G>T	p.Lys98Asn	p.K98N	ENST00000373001	NM_022157.3	98	aaG/aaT																																																																															
MPL	4352	MSKCC	GRCh37	1	43812465	43812465	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs373621350		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	160	685	4	ENST00000372470.3:c.1168C>T	p.Arg390Cys	p.R390C	ENST00000372470	NM_005373.2	390	Cgc/Tgc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65332599	65332599	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758451418		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	80	485	0	ENST00000342505.4:c.940G>A	p.Glu314Lys	p.E314K	ENST00000342505	NM_002227.2	314	Gaa/Aaa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256439	115256439	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774832953		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	99	491	0	ENST00000369535.4:c.272C>T	p.Ala91Val	p.A91V	ENST00000369535	NM_002524.4	91	gCg/gTg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176145105	176145105	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	53	467	0	ENST00000367669.3:c.506G>T	p.Arg169Ile	p.R169I	ENST00000367669	NM_022457.5	169	aGa/aTa																																																																															
MDM4	4194	MSKCC	GRCh37	1	204501343	204501343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	88	520	0	ENST00000367182.3:c.312G>T	p.Lys104Asn	p.K104N	ENST00000367182	NM_001278516.1	104	aaG/aaT																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518267	204518267	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	97	480	0	ENST00000367182.3:c.930G>T	p.Lys310Asn	p.K310N	ENST00000367182	NM_001278516.1	310	aaG/aaT																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206647801	206647801	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782361671		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	123	667	3	ENST00000367120.3:c.215C>T	p.Ala72Val	p.A72V	ENST00000367120	NM_014002.3	72	gCg/gTg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206653845	206653845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1195	122	1059	0	ENST00000367120.3:c.1396C>A	p.Leu466Ile	p.L466I	ENST00000367120	NM_014002.3	466	Ctc/Atc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63661997	63661997	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	85	623	0	ENST00000279873.7:c.101G>T	p.Arg34Ile	p.R34I	ENST00000279873	NM_032199.2	34	aGa/aTa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573220	64573220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	176	909	0	ENST00000337652.1:c.1087G>A	p.Glu363Lys	p.E363K	ENST00000337652	NM_130803.2	363	Gag/Aag																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94170355	94170355	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	76	395	0	ENST00000323929.3:c.1914G>T	p.Lys638Asn	p.K638N	ENST00000323929	NM_005591.3	638	aaG/aaT																																																																															
ATM	472	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs772821016		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	82	532	1	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108153530	108153530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	75	461	0	ENST00000278616.4:c.3670C>A	p.Leu1224Ile	p.L1224I	ENST00000278616	NM_000051.3	1224	Ctt/Att																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118353197	118353197	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	42	285	0	ENST00000534358.1:c.4073A>C	p.Lys1358Thr	p.K1358T	ENST00000534358	NM_005933.3	1358	aAa/aCa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118370033	118370033	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	55	403	0	ENST00000534358.1:c.5977G>T	p.Gly1993Ter	p.G1993*	ENST00000534358	NM_005933.3	1993	Gga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118371742	118371742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	89	359	0	ENST00000534358.1:c.6199C>T	p.Arg2067Cys	p.R2067C	ENST00000534358	NM_005933.3	2067	Cgc/Tgc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	417094	417094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	104	486	0	ENST00000399788.2:c.3456G>T	p.Met1152Ile	p.M1152I	ENST00000399788	NM_001042603.1	1152	atG/atT																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435061	18435061	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267603400		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	92	336	0	ENST00000266497.5:c.46G>A	p.Glu16Lys	p.E16K	ENST00000266497		16	Gaa/Aaa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18499670	18499670	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	114	667	0	ENST00000266497.5:c.1525A>C	p.Asn509His	p.N509H	ENST00000266497		509	Aat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378649	25378649	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	83	512	0	ENST00000256078.4:c.349A>C	p.Lys117Gln	p.K117Q	ENST00000256078	NM_033360.2	117	Aaa/Caa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46242710	46242710	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777576250		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	83	445	0	ENST00000334344.6:c.1672C>T	p.Arg558Cys	p.R558C	ENST00000334344	NM_152641.2	558	Cgt/Tgt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246122	46246122	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	110	475	0	ENST00000334344.6:c.4216A>G	p.Thr1406Ala	p.T1406A	ENST00000334344	NM_152641.2	1406	Act/Gct																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246368	46246368	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776372381		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	67	427	0	ENST00000334344.6:c.4462G>A	p.Asp1488Asn	p.D1488N	ENST00000334344	NM_152641.2	1488	Gac/Aac																																																																															
MDM2	4193	MSKCC	GRCh37	12	69210626	69210626	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	68	385	0	ENST00000462284.1:c.209A>C	p.Lys70Thr	p.K70T	ENST00000462284	NM_002392.5	70	aAa/aCa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114225	115114225	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	183	894	0	ENST00000257566.3:c.992A>C	p.Lys331Thr	p.K331T	ENST00000257566	NM_016569.3	331	aAg/aCg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120675	115120675	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1162	215	1079	0	ENST00000257566.3:c.331G>T	p.Glu111Ter	p.E111*	ENST00000257566	NM_016569.3	111	Gaa/Taa																																																																															
SETD8	387893	MSKCC	GRCh37	12	123892066	123892066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	98	470	2	ENST00000330479.4:c.875G>A	p.Arg292His	p.R292H	ENST00000330479	NM_020382.3	292	cGc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519945		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	113	702	0	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562052	21562052	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1359079402		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1235	133	1131	1	ENST00000382592.4:c.1867C>T	p.Arg623Trp	p.R623W	ENST00000382592	NM_014572.2	623	Cgg/Tgg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26959351	26959351	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	101	371	0	ENST00000381527.3:c.518A>G	p.Asp173Gly	p.D173G	ENST00000381527	NM_001260.1	173	gAc/gGc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26974623	26974623	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	113	588	1	ENST00000381527.3:c.967C>T	p.Arg323Ter	p.R323*	ENST00000381527	NM_001260.1	323	Cga/Tga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910439	32910439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	99	420	1	ENST00000380152.3:c.1947G>T	p.Gln649His	p.Q649H	ENST00000380152		649	caG/caT																																																																															
RB1	5925	MSKCC	GRCh37	13	48942686	48942686	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767011440		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	66	353	0	ENST00000267163.4:c.1073G>A	p.Arg358Gln	p.R358Q	ENST00000267163	NM_000321.2	358	cGa/cAa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73340141	73340141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	104	420	0	ENST00000377767.4:c.1939G>A	p.Asp647Asn	p.D647N	ENST00000377767	NM_014953.3	647	Gat/Aat																																																																															
DIS3	22894	MSKCC	GRCh37	13	73347911	73347911	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146500302		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	36	348	2	ENST00000377767.4:c.1150C>T	p.Arg384Cys	p.R384C	ENST00000377767	NM_014953.3	384	Cgc/Tgc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73347916	73347916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139907646		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	72	335	0	ENST00000377767.4:c.1145G>A	p.Arg382Gln	p.R382Q	ENST00000377767	NM_014953.3	382	cGa/cAa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73350074	73350074	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	62	351	0	ENST00000377767.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000377767	NM_014953.3	271	Gaa/Taa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560464	95560464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	124	674	0	ENST00000343455.3:c.5125G>A	p.Asp1709Asn	p.D1709N	ENST00000343455	NM_177438.2	1709	Gat/Aat																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562839	95562839	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	74	411	1	ENST00000343455.3:c.4418C>A	p.Ser1473Ter	p.S1473*	ENST00000343455	NM_177438.2	1473	tCa/tAa																																																																															
B2M	567	MSKCC	GRCh37	15	45007743	45007743	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	131	461	1	ENST00000558401.1:c.190G>T	p.Glu64Ter	p.E64*	ENST00000558401	NM_004048.2	64	Gag/Tag																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479811	67479811	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060500766		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	336	877	0	ENST00000327367.4:c.1118G>A	p.Arg373His	p.R373H	ENST00000327367	NM_005902.3	373	cGc/cAc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576112	88576112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1141	65	968	0	ENST00000360948.2:c.1561C>T	p.His521Tyr	p.H521Y	ENST00000360948	NM_001012338.2	521	Cac/Tac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857020	9857020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	63	332	0	ENST00000330684.3:c.4381G>A	p.Glu1461Lys	p.E1461K	ENST00000330684	NM_001134407.1	1461	Gaa/Aaa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23637631	23637631	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45476495		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	155	757	0	ENST00000261584.4:c.2674G>A	p.Glu892Lys	p.E892K	ENST00000261584	NM_024675.3	892	Gaa/Aaa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647508	23647508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	129	721	0	ENST00000261584.4:c.359G>T	p.Arg120Ile	p.R120I	ENST00000261584	NM_024675.3	120	aGa/aTa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50818294	50818294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	93	474	0	ENST00000398568.2:c.1872G>T	p.Lys624Asn	p.K624N	ENST00000398568	NM_001042412.1	624	aaG/aaT																																																																															
NUP93	9688	MSKCC	GRCh37	16	56852609	56852609	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs761156791		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	139	650	0	ENST00000308159.5:c.523C>T	p.Arg175Ter	p.R175*	ENST00000308159	NM_014669.4	175	Cga/Tga																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868319	56868319	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748524706		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	94	414	2	ENST00000308159.5:c.1702C>T	p.Arg568Cys	p.R568C	ENST00000308159	NM_014669.4	568	Cgc/Tgc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81972500	81972500	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	61	658	0	ENST00000359376.3:c.3293A>C	p.Lys1098Thr	p.K1098T	ENST00000359376	NM_002661.3	1098	aAg/aCg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216403	7216403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1291	132	1015	1	ENST00000380728.2:c.845C>T	p.Ala282Val	p.A282V	ENST00000380728		282	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	203	947	3	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519996		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	224	1025	0	ENST00000269305.4:c.395A>C	p.Lys132Thr	p.K132T	ENST00000269305	NM_001126112.2	132	aAg/aCg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998913	11998913	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	66	346	0	ENST00000353533.5:c.415G>T	p.Glu139Ter	p.E139*	ENST00000353533	NM_003010.3	139	Gaa/Taa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032603	12032603	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	51	621	0	ENST00000353533.5:c.1039T>G	p.Cys347Gly	p.C347G	ENST00000353533	NM_003010.3	347	Tgc/Ggc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12043193	12043193	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	67	397	0	ENST00000353533.5:c.1078G>T	p.Glu360Ter	p.E360*	ENST00000353533	NM_003010.3	360	Gag/Tag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983343	15983343	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61753151		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	113	512	2	ENST00000268712.3:c.3436C>T	p.Arg1146Trp	p.R1146W	ENST00000268712	NM_006311.3	1146	Cgg/Tgg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16021312	16021312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	41	362	0	ENST00000268712.3:c.1945G>A	p.Ala649Thr	p.A649T	ENST00000268712	NM_006311.3	649	Gca/Aca																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16049699	16049699	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	117	621	0	ENST00000268712.3:c.1073G>T	p.Arg358Ile	p.R358I	ENST00000268712	NM_006311.3	358	aGa/aTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29527439	29527439	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs587781517		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	79	363	0	ENST00000358273.4:c.889-1G>T		p.X297_splice	ENST00000358273	NM_001042492.2	297																																																																																
NF1	4763	MSKCC	GRCh37	17	29553492	29553492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs768638173		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	121	791	1	ENST00000358273.4:c.2041C>T	p.Arg681Ter	p.R681*	ENST00000358273	NM_001042492.2	681	Cga/Tga																																																																															
EZH1	2145	MSKCC	GRCh37	17	40854593	40854593	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	176	887	0	ENST00000428826.2:c.2201C>A	p.Ala734Asp	p.A734D	ENST00000428826		734	gCt/gAt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41276095	41276095	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80356994		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	125	537	2	ENST00000357654.3:c.19C>T	p.Arg7Cys	p.R7C	ENST00000357654	NM_007294.3	7	Cgc/Tgc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435825	56435825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	157	842	0	ENST00000407977.2:c.1312G>A	p.Ala438Thr	p.A438T	ENST00000407977		438	Gcc/Acc																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56809870	56809870	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	127	604	0	ENST00000337432.4:c.991A>G	p.Ser331Gly	p.S331G	ENST00000337432	NM_058216.2	331	Agc/Ggc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740436	58740436	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs769061997		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	125	613	0	ENST00000305921.3:c.1341G>T	p.Glu447Asp	p.E447D	ENST00000305921	NM_003620.3	447	gaG/gaT																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740668	58740668	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs759850701		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	65	728	0	ENST00000305921.3:c.1573G>T	p.Glu525Ter	p.E525*	ENST00000305921	NM_003620.3	525	Gaa/Taa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	132	583	0	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375016	45375016	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1226662382		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	86	444	0	ENST00000262160.6:c.827C>T	p.Ser276Leu	p.S276L	ENST00000262160	NM_005901.5	276	tCg/tTg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621029	1621029	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1241	213	1257	0	ENST00000344749.5:c.1031A>C	p.His344Pro	p.H344P	ENST00000344749	NM_001136139.2	344	cAc/cCc																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17387699	17387699	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	84	709	0	ENST00000359435.4:c.767A>G	p.Glu256Gly	p.E256G	ENST00000359435	NM_001033549.1	256	gAg/gGg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271312	18271312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1297	117	976	2	ENST00000222254.8:c.354C>A	p.Phe118Leu	p.F118L	ENST00000222254	NM_005027.3	118	ttC/ttA																																																																															
AXL	558	MSKCC	GRCh37	19	41726555	41726555	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	168	805	0	ENST00000301178.4:c.100G>T	p.Glu34Ter	p.E34*	ENST00000301178	NM_021913.4	34	Gaa/Taa																																																																															
ALK	238	MSKCC	GRCh37	2	29940455	29940455	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138686378		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	101	410	0	ENST00000389048.3:c.776G>A	p.Arg259His	p.R259H	ENST00000389048	NM_004304.4	259	cGc/cAc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025841	48025841	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs542848931		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	48	352	0	ENST00000234420.5:c.719G>A	p.Arg240Gln	p.R240Q	ENST00000234420	NM_000179.2	240	cGa/cAa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095644	178095644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763240080		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	117	559	0	ENST00000397062.3:c.1687G>A	p.Glu563Lys	p.E563K	ENST00000397062	NM_006164.4	563	Gaa/Aaa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285292	212285292	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	64	514	0	ENST00000342788.4:c.3009C>A	p.Phe1003Leu	p.F1003L	ENST00000342788	NM_005235.2	1003	ttC/ttA																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488706	212488706	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	112	645	0	ENST00000342788.4:c.2143G>T	p.Glu715Ter	p.E715*	ENST00000342788	NM_005235.2	715	Gaa/Taa																																																																															
INHA	3623	MSKCC	GRCh37	2	220439512	220439512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	202	925	0	ENST00000243786.2:c.365G>A	p.Arg122His	p.R122H	ENST00000243786	NM_002191.3	122	cGc/cAc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225378351	225378351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	67	283	0	ENST00000264414.4:c.544G>A	p.Ala182Thr	p.A182T	ENST00000264414	NM_003590.4	182	Gca/Aca																																																																															
TOP1	7150	MSKCC	GRCh37	20	39713125	39713125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	43	226	0	ENST00000361337.2:c.531G>T	p.Lys177Asn	p.K177N	ENST00000361337	NM_003286.2	177	aaG/aaT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714491	40714491	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	102	537	0	ENST00000373198.4:c.3906C>A	p.Phe1302Leu	p.F1302L	ENST00000373198	NM_133170.3	1302	ttC/ttA																																																																															
CRKL	1399	MSKCC	GRCh37	22	21304053	21304053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	141	716	0	ENST00000354336.3:c.832G>A	p.Glu278Lys	p.E278K	ENST00000354336	NM_005207.3	278	Gaa/Aaa																																																																															
NF2	4771	MSKCC	GRCh37	22	30067929	30067929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	168	847	0	ENST00000338641.4:c.1114G>A	p.Glu372Lys	p.E372K	ENST00000338641	NM_000268.3	372	Gaa/Aaa																																																																															
EP300	2033	MSKCC	GRCh37	22	41537220	41537220	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	172	623	0	ENST00000263253.7:c.2047A>G	p.Thr683Ala	p.T683A	ENST00000263253	NM_001429.3	683	Act/Gct																																																																															
EP300	2033	MSKCC	GRCh37	22	41564766	41564766	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1303184977		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	120	776	1	ENST00000263253.7:c.4067G>A	p.Arg1356Gln	p.R1356Q	ENST00000263253	NM_001429.3	1356	cGa/cAa																																																																															
EP300	2033	MSKCC	GRCh37	22	41572357	41572357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	202	977	2	ENST00000263253.7:c.4886C>T	p.Ala1629Val	p.A1629V	ENST00000263253	NM_001429.3	1629	gCg/gTg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37083811	37083811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	104	491	0	ENST00000231790.2:c.1720C>T	p.Leu574Phe	p.L574F	ENST00000231790	NM_000249.3	574	Ctc/Ttc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47127805	47127805	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	118	447	2	ENST00000409792.3:c.5278-1G>T		p.X1760_splice	ENST00000409792	NM_014159.6	1760																																																																																
SETD2	29072	MSKCC	GRCh37	3	47162226	47162226	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	125	596	0	ENST00000409792.3:c.3900G>A	p.Trp1300Ter	p.W1300*	ENST00000409792	NM_014159.6	1300	tgG/tgA																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162904	47162904	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs757432733		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	125	520	0	ENST00000409792.3:c.3222G>T	p.Lys1074Asn	p.K1074N	ENST00000409792	NM_014159.6	1074	aaG/aaT																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637690	52637690	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1239654517		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	123	515	1	ENST00000394830.3:c.2626C>T	p.Arg876Cys	p.R876C	ENST00000394830	NM_018313.4	876	Cgt/Tgt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643768	52643768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	169	743	1	ENST00000394830.3:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000394830	NM_018313.4	710	Cga/Tga																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72842131	72842131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	46	410	0	ENST00000325599.8:c.1117G>T	p.Asp373Tyr	p.D373Y	ENST00000325599	NM_018130.2	373	Gac/Tac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259627	89259627	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	50	437	0	ENST00000336596.2:c.771T>G	p.Cys257Trp	p.C257W	ENST00000336596	NM_005233.5	257	tgT/tgG																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498496	89498496	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	65	384	0	ENST00000336596.2:c.2468G>T	p.Arg823Ile	p.R823I	ENST00000336596	NM_005233.5	823	aGa/aTa																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119585471	119585471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	102	388	0	ENST00000316626.5:c.914C>T	p.Ser305Leu	p.S305L	ENST00000316626		305	tCg/tTg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200691	128200691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1223	120	1013	0	ENST00000341105.2:c.1114G>A	p.Ala372Thr	p.A372T	ENST00000341105	NM_032638.4	372	Gcc/Acc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911636	134911636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	95	536	0	ENST00000398015.3:c.2101G>A	p.Glu701Lys	p.E701K	ENST00000398015	NM_004441.4	701	Gag/Aag																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138433425	138433425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	77	613	0	ENST00000289153.2:c.1187G>A	p.Arg396Lys	p.R396K	ENST00000289153	NM_006219.2	396	aGa/aAa																																																																															
ATR	545	MSKCC	GRCh37	3	142275223	142275223	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	79	319	0	ENST00000350721.4:c.2078+2T>C		p.X693_splice	ENST00000350721	NM_001184.3	693																																																																																
ATR	545	MSKCC	GRCh37	3	142278206	142278206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	75	670	0	ENST00000350721.4:c.1619A>G	p.Tyr540Cys	p.Y540C	ENST00000350721	NM_001184.3	540	tAc/tGc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170013719	170013719	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1388201066		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	99	507	0	ENST00000295797.4:c.1438C>T	p.Arg480Cys	p.R480C	ENST00000295797	NM_002740.5	480	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	133	704	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922301	178922301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	98	415	0	ENST00000263967.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000263967	NM_006218.2	357	cGa/cAa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1952853	1952853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	174	752	0	ENST00000382891.5:c.1936G>A	p.Glu646Lys	p.E646K	ENST00000382891	NM_133335.3	646	Gaa/Aaa																																																																															
KIT	3815	MSKCC	GRCh37	4	55595548	55595548	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	102	498	0	ENST00000288135.5:c.2038A>C	p.Asn680His	p.N680H	ENST00000288135	NM_000222.2	680	Aat/Cat																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280083	66280083	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	89	414	0	ENST00000273854.3:c.1606T>G	p.Tyr536Asp	p.Y536D	ENST00000273854	NM_004439.5	536	Tat/Gat																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84390300	84390300	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	126	585	0	ENST00000321945.7:c.481T>G	p.Phe161Val	p.F161V	ENST00000321945	NM_139076.2	161	Ttt/Gtt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244091	153244091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	147	596	0	ENST00000281708.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000281708	NM_033632.3	689	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	126	635	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542504	187542504	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	143	684	0	ENST00000441802.2:c.5236T>C	p.Ser1746Pro	p.S1746P	ENST00000441802	NM_005245.3	1746	Tcc/Ccc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549883	187549883	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs186220887		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	80	551	0	ENST00000441802.2:c.4358G>A	p.Arg1453His	p.R1453H	ENST00000441802	NM_005245.3	1453	cGt/cAt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	84	346	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67590445	67590445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	52	247	0	ENST00000274335.5:c.1507C>T	p.Arg503Trp	p.R503W	ENST00000274335		503	Cgg/Tgg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67593250	67593250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	68	353	0	ENST00000274335.5:c.1996G>A	p.Glu666Lys	p.E666K	ENST00000274335		666	Gaa/Aaa																																																																															
MSH3	4437	MSKCC	GRCh37	5	80024771	80024771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	49	421	0	ENST00000265081.6:c.1555C>T	p.Leu519Phe	p.L519F	ENST00000265081	NM_002439.4	519	Ctc/Ttc																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	98	463	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	81	425	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112176051	112176051	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	94	425	0	ENST00000257430.4:c.4760C>A	p.Ser1587Ter	p.S1587*	ENST00000257430	NM_000038.5	1587	tCa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112177061	112177061	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	54	459	0	ENST00000257430.4:c.5770A>C	p.Lys1924Gln	p.K1924Q	ENST00000257430	NM_000038.5	1924	Aaa/Caa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131924513	131924513	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	117	476	0	ENST00000265335.6:c.1186T>G	p.Phe396Val	p.F396V	ENST00000265335		396	Ttt/Gtt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131976476	131976476	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	166	569	1	ENST00000265335.6:c.3731C>A	p.Ser1244Tyr	p.S1244Y	ENST00000265335		1244	tCt/tAt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048737	180048737	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144803521		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	92	964	2	ENST00000261937.6:c.1825G>A	p.Asp609Asn	p.D609N	ENST00000261937	NM_182925.4	609	Gac/Aac																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048881	180048881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751002839		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1196	189	1131	2	ENST00000261937.6:c.1681G>A	p.Glu561Lys	p.E561K	ENST00000261937	NM_182925.4	561	Gaa/Aaa																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26046038	26046038	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867056701		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	66	456	0	ENST00000540144.1:c.400G>A	p.Glu134Lys	p.E134K	ENST00000540144	NM_003531.2	134	Gaa/Aaa																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287298	33287298	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	95	743	0	ENST00000374542.5:c.1799T>C	p.Val600Ala	p.V600A	ENST00000374542	NM_001141970.1	600	gTc/gCc																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43738988	43738988	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	104	544	0	ENST00000523873.1:c.5A>C	p.Asn2Thr	p.N2T	ENST00000523873		2	aAc/aCc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117663635	117663635	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs755903627		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	43	521	0	ENST00000368508.3:c.4597A>C	p.Lys1533Gln	p.K1533Q	ENST00000368508	NM_002944.2	1533	Aaa/Caa																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137525497	137525497	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	101	587	0	ENST00000367739.4:c.518A>C	p.Asn173Thr	p.N173T	ENST00000367739	NM_000416.2	173	aAt/aCt																																																																															
RHEB	6009	MSKCC	GRCh37	7	151168657	151168657	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	70	553	0	ENST00000262187.5:c.310T>G	p.Leu104Val	p.L104V	ENST00000262187	NM_005614.3	104	Ttg/Gtg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874830	151874830	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	117	465	0	ENST00000262189.6:c.7708C>T	p.Gln2570Ter	p.Q2570*	ENST00000262189	NM_170606.2	2570	Caa/Taa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162110	38162110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	106	483	1	ENST00000317025.8:c.2606C>T	p.Ala869Val	p.A869V	ENST00000317025	NM_023034.1	869	gCc/gTc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271227	38271227	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	97	961	0	ENST00000425967.3:c.2481C>A	p.Phe827Leu	p.F827L	ENST00000425967	NM_001174067.1	827	ttC/ttA																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968173	68968173	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	128	635	0	ENST00000288368.4:c.1202G>T	p.Arg401Ile	p.R401I	ENST00000288368	NM_024870.2	401	aGa/aTa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5072522	5072522	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	84	358	0	ENST00000381652.3:c.1672A>C	p.Lys558Gln	p.K558Q	ENST00000381652	NM_004972.3	558	Aag/Cag																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090538	5090538	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	97	392	0	ENST00000381652.3:c.2854A>C	p.Lys952Gln	p.K952Q	ENST00000381652	NM_004972.3	952	Aaa/Caa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	145	665	3	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																															
FANCC	2176	MSKCC	GRCh37	9	97873801	97873801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	144	952	1	ENST00000289081.3:c.1273C>T	p.Leu425Phe	p.L425F	ENST00000289081	NM_000136.2	425	Ctc/Ttc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223016	53223016	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	174	457	1	ENST00000375401.3:c.4056G>T	p.Glu1352Asp	p.E1352D	ENST00000375401	NM_004187.3	1352	gaG/gaT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413161	63413161	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	130	403	0	ENST00000330258.3:c.6G>T	p.Glu2Asp	p.E2D	ENST00000330258	NM_152424.3	2	gaG/gaT																																																																															
AR	367	MSKCC	GRCh37	X	66765776	66765776	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	211	617	0	ENST00000374690.3:c.788T>G	p.Leu263Arg	p.L263R	ENST00000374690	NM_000044.3	263	cTt/cGt																																																																															
ATRX	546	MSKCC	GRCh37	X	76938995	76938995	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs886044898		P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	105	394	0	ENST00000373344.5:c.1753G>T	p.Glu585Ter	p.E585*	ENST00000373344	NM_000489.3	585	Gaa/Taa																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793272	242793272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	192	1032	1	ENST00000334409.5:c.805G>A	p.Asp269Asn	p.D269N	ENST00000334409	NM_005018.2	269	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0056526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	138	415	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0056526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	169	770	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974765	21974765	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1329324238		P-0056526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	105	341	2	ENST00000304494.5:c.62C>A	p.Ala21Asp	p.A21D	ENST00000304494	NM_000077.4	21	gCc/gAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107008	27107008	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	116	639	0	ENST00000324856.7:c.6619C>T	p.Gln2207Ter	p.Q2207*	ENST00000324856	NM_006015.4	2207	Cag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954247	32954247	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	107	541	0	ENST00000380152.3:c.9221T>C	p.Leu3074Pro	p.L3074P	ENST00000380152		3074	cTa/cCa																																																																															
VHL	7428	MSKCC	GRCh37	3	10183565	10183565	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	136	758	0	ENST00000256474.2:c.34G>C	p.Glu12Gln	p.E12Q	ENST00000256474	NM_000551.3	12	Gag/Cag																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73047279	73047279	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0056526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	92	428	0	ENST00000356692.5:c.86T>G	p.Leu29Arg	p.L29R	ENST00000356692		29	cTt/cGt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589179	67589182	+	frameshift_variant	Frame_Shift_Del	DEL	ATAT	ATAT	-			P-0056526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	64	329	2	ENST00000274335.5:c.1167_1170del	p.Tyr390AlafsTer6	p.Y390Afs*6	ENST00000274335		389	aaATAT/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0056576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	23	272	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189448	56189448	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	39	530	1	ENST00000399503.3:c.4480C>T	p.Gln1494Ter	p.Q1494*	ENST00000399503	NM_005921.1	1494	Cag/Tag																																																																															
FYN	2534	MSKCC	GRCh37	6	112041037	112041037	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761032788		P-0056576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	25	578	2	ENST00000368678.4:c.218C>T	p.Thr73Met	p.T73M	ENST00000368678		73	aCg/aTg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870966	12870966	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	39	407	0	ENST00000228872.4:c.193C>T	p.Gln65Ter	p.Q65*	ENST00000228872	NM_004064.3	65	Cag/Tag																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553356	106553356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	34	520	0	ENST00000369096.4:c.1321C>T	p.Pro441Ser	p.P441S	ENST00000369096	NM_001198.3	441	Ccg/Tcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0056579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	67	438	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0056579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	127	799	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032572	12032572	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	71	504	0	ENST00000353533.5:c.1008C>G	p.Phe336Leu	p.F336L	ENST00000353533	NM_003010.3	336	ttC/ttG																																																																															
JAK2	3717	MSKCC	GRCh37	9	5029908	5029908	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0056579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	49	408	0	ENST00000381652.3:c.350+2T>A		p.X117_splice	ENST00000381652	NM_004972.3	117																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153250921	153250922	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0056580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	43	268	0	ENST00000281708.4:c.1138dup	p.Asp380GlyfsTer2	p.D380Gfs*2	ENST00000281708	NM_033632.3	380	gat/gGat																																																																															
SUFU	51684	MSKCC	GRCh37	10	104389875	104389875	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	173	556	0	ENST00000369902.3:c.1418T>C	p.Ile473Thr	p.I473T	ENST00000369902	NM_016169.3	473	aTc/aCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578459	7578467	+	inframe_deletion	In_Frame_Del	DEL	GACGCGGGT	GACGCGGGT	-			P-0056580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	423	893	0	ENST00000269305.4:c.463_471del	p.Thr155_Val157del	p.T155_V157del	ENST00000269305	NM_001126112.2	155	ACCCGCGTC/-																																																																															
EZH1	2145	MSKCC	GRCh37	17	40865400	40865400	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	253	760	0	ENST00000428826.2:c.1031C>G	p.Ala344Gly	p.A344G	ENST00000428826		344	gCa/gGa																																																																															
BCL2	596	MSKCC	GRCh37	18	60985635	60985636	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0056580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	41	153	0	ENST00000333681.4:c.264_265delinsTT	p.Val89Leu	p.V89L	ENST00000333681		88	ccGGtg/ccTTtg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610535	10610535	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	194	828	0	ENST00000171111.5:c.175C>A	p.His59Asn	p.H59N	ENST00000171111	NM_203500.1	59	Cat/Aat																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902109	50902109	+	start_lost,splice_region_variant	Translation_Start_Site	SNP	A	A	T			P-0056580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	131	539	0	ENST00000440232.2:c.1A>T	p.Met1?	p.M1?	ENST00000440232	NM_002691.3	1	Atg/Ttg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523528	106523528	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0056580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	45	264	0	ENST00000359195.3:c.2680A>T	p.Ser894Cys	p.S894C	ENST00000359195	NM_002649.2	894	Agc/Tgc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245086	53245086	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0056580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	188	419	0	ENST00000375401.3:c.854C>G	p.Ser285Ter	p.S285*	ENST00000375401	NM_004187.3	285	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0056600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	259	677	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0056600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	43	265	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852217		P-0056600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	403	776	0	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1327796	1327798	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs761286705		P-0056600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	70	462	0	ENST00000381566.1:c.83_85del	p.Glu28del	p.E28del	ENST00000381566		28	gAAGga/gga																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027023	48027023	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	62	393	0	ENST00000234420.5:c.1901T>C	p.Leu634Ser	p.L634S	ENST00000234420	NM_000179.2	634	tTg/tCg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023259	31023259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	260	547	0	ENST00000375687.4:c.2744C>T	p.Ser915Phe	p.S915F	ENST00000375687	NM_015338.5	915	tCc/tTc																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032182	26032182	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0056600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	63	356	0	ENST00000244661.2:c.107T>A	p.Val36Glu	p.V36E	ENST00000244661	NM_003537.3	36	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876659802		P-0056602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	133	707	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0056605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	107	348	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162394341	162394341	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146173584		P-0056605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	48	371	0	ENST00000366898.1:c.727G>A	p.Asp243Asn	p.D243N	ENST00000366898	NM_004562.2	243	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs530941076		P-0056605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	224	751	0	ENST00000269305.4:c.658T>G	p.Tyr220Asp	p.Y220D	ENST00000269305	NM_001126112.2	220	Tat/Gat																																																																															
CDH1	999	MSKCC	GRCh37	16	68842725	68842725	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	146	515	1	ENST00000261769.5:c.661G>T	p.Asp221Tyr	p.D221Y	ENST00000261769	NM_004360.3	221	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0056606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	87	346	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ATM	472	MSKCC	GRCh37	11	108129749	108129749	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs780619951		P-0056606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	98	366	0	ENST00000278616.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000278616	NM_000051.3	805	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108214065	108214074	+	frameshift_variant	Frame_Shift_Del	DEL	TTTCAGTGCC	TTTCAGTGCC	-	rs1300297318		P-0056606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	50	264	1	ENST00000278616.4:c.8395_8404del	p.Phe2799LysfsTer4	p.F2799Kfs*4	ENST00000278616	NM_000051.3	2795	gaTTTCAGTGCC/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0056607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	360	645	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112174580	112174580	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	126	277	0	ENST00000257430.4:c.3289G>T	p.Glu1097Ter	p.E1097*	ENST00000257430	NM_000038.5	1097	Gaa/Taa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448592	89448592	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs543425684		P-0056607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	107	453	0	ENST00000336596.2:c.1556C>T	p.Thr519Met	p.T519M	ENST00000336596	NM_005233.5	519	aCg/aTg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139831	55139831	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758137485		P-0056607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	152	416	0	ENST00000257290.5:c.1492G>A	p.Ala498Thr	p.A498T	ENST00000257290	NM_006206.4	498	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0056607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	525	794	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93953172	93953172	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	31	286	0	ENST00000369303.4:c.2969A>G	p.His990Arg	p.H990R	ENST00000369303	NM_004440.3	990	cAt/cGt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0036133-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			514	17	463	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0052300-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			492	40	336	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67201475	67201475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052300-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			952	69	851	1	ENST00000312629.5:c.916C>T	p.Arg306Trp	p.R306W	ENST00000312629	NM_003952.2	306	Cgg/Tgg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405851	157405851	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0052300-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	35	445	0	ENST00000346085.5:c.2093C>G	p.Ser698Ter	p.S698*	ENST00000346085	NM_020732.3	698	tCa/tGa																																																																															
TEK	7010	MSKCC	GRCh37	9	27172632	27172632	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052300-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			480	35	487	0	ENST00000380036.4:c.647G>A	p.Trp216Ter	p.W216*	ENST00000380036	NM_000459.3	216	tGg/tAg																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913233		P-0056447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	138	1167	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790072	40790072	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61753667		P-0056447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	122	952	0	ENST00000373198.4:c.2659G>A	p.Ala887Thr	p.A887T	ENST00000373198	NM_133170.3	887	Gcc/Acc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068421	26068421	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	24	419	0	ENST00000435504.4:c.69del	p.Lys23AsnfsTer7	p.K23Nfs*7	ENST00000435504		23	aaA/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0056239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	298	740	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0056239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	77	323	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0056239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	101	437	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	290	624	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562745	21562745	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778627422		P-0056239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	325	906	0	ENST00000382592.4:c.1174G>A	p.Ala392Thr	p.A392T	ENST00000382592	NM_014572.2	392	Gcg/Acg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748245	41748245	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	146	876	0	ENST00000226382.2:c.524A>G	p.Lys175Arg	p.K175R	ENST00000226382	NM_003924.3	175	aAg/aGg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967313	25967313	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	88	448	0	ENST00000435504.4:c.1893del	p.His632IlefsTer167	p.H632Ifs*167	ENST00000435504		631	ttT/tt																																																																															
SRC	6714	MSKCC	GRCh37	20	36030985	36030985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	244	788	0	ENST00000358208.4:c.1264C>T	p.Arg422Trp	p.R422W	ENST00000358208		422	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175521	112176541	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTGGAATGGTAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACAAACCATGCCACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCTTGTTCATCCAGCCTGAGTGCTCTGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGGAATGAAACAGAATCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTCATCACGTAAAGCAAAAAAGCCAGCCCAGACTGCTTCAAAATTACCTCCACCTGTGGCAAGGAAACCAAGTCAGCTGCCTGTGTACAAACTTCTACCATCACAAAACAGGTTGCAACCCCAAAAGCATGTTAGTTTTACACCGGGGGATGATATGCCACGGGTGTATTGTGTTGAAGGGACACCTATAAACTTTTCCACAGCTACATCTCTAAGTGATCTAACAATCGAATCCCCTCCAAATGAGTTAGCTGCTGGAGAAGGAGTTAGAGGAGGGGCACAGTCAGGTGAATTTGAAAAACGAGATACCATTCCTACAGAAGGCAGAAGTACAGATGAGGCTCAAGGAGGAAAAACCTCATCTGTAACCATACCTGAATTGGATGACAATAAAGCAGAGGAAGGTGATATTCTTGCAGAATGCATTAATTCTGCTATGCCCAAAGGGAAAAGTCACAAGCCTTTCCGTGTGAAAAAGATAATGGACCAGGTC	CAGTGGAATGGTAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACAAACCATGCCACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCTTGTTCATCCAGCCTGAGTGCTCTGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGGAATGAAACAGAATCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTCATCACGTAAAGCAAAAAAGCCAGCCCAGACTGCTTCAAAATTACCTCCACCTGTGGCAAGGAAACCAAGTCAGCTGCCTGTGTACAAACTTCTACCATCACAAAACAGGTTGCAACCCCAAAAGCATGTTAGTTTTACACCGGGGGATGATATGCCACGGGTGTATTGTGTTGAAGGGACACCTATAAACTTTTCCACAGCTACATCTCTAAGTGATCTAACAATCGAATCCCCTCCAAATGAGTTAGCTGCTGGAGAAGGAGTTAGAGGAGGGGCACAGTCAGGTGAATTTGAAAAACGAGATACCATTCCTACAGAAGGCAGAAGTACAGATGAGGCTCAAGGAGGAAAAACCTCATCTGTAACCATACCTGAATTGGATGACAATAAAGCAGAGGAAGGTGATATTCTTGCAGAATGCATTAATTCTGCTATGCCCAAAGGGAAAAGTCACAAGCCTTTCCGTGTGAAAAAGATAATGGACCAGGTC	-			P-0056239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	136	338	0	ENST00000257430.4:c.4233_5253del	p.Gly1412LysfsTer14	p.G1412Kfs*14	ENST00000257430	NM_000038.5	1410	tgCAGTGGAATGGTAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACAAACCATGCCACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCTTGTTCATCCAGCCTGAGTGCTCTGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGGAATGAAACAGAATCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTCATCACGTAAAGCAAAAAAGCCAGCCCAGACTGCTTCAAAATTACCTCCACCTGTGGCAAGGAAACCAAGTCAGCTGCCTGTGTACAAACTTCTACCATCACAAAACAGGTTGCAACCCCAAAAGCATGTTAGTTTTACACCGGGGGATGATATGCCACGGGTGTATTGTGTTGAAGGGACACCTATAAACTTTTCCACAGCTACATCTCTAAGTGATCTAACAATCGAATCCCCTCCAAATGAGTTAGCTGCTGGAGAAGGAGTTAGAGGAGGGGCACAGTCAGGTGAATTTGAAAAACGAGATACCATTCCTACAGAAGGCAGAAGTACAGATGAGGCTCAAGGAGGAAAAACCTCATCTGTAACCATACCTGAATTGGATGACAATAAAGCAGAGGAAGGTGATATTCTTGCAGAATGCATTAATTCTGCTATGCCCAAAGGGAAAAGTCACAAGCCTTTCCGTGTGAAAAAGATAATGGACCAGGTC/tg																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346388	152346389	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGTGATAAAGCATTTCTGTTTTT			P-0056239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	58	553	0	ENST00000359321.1:c.159_181dup	p.Leu61GlnfsTer9	p.L61Qfs*9	ENST00000359321	NM_005431.1	61	cta/cAAAAACAGAAATGCTTTATCACCta																																																																															
MYC	4609	MSKCC	GRCh37	8	128751182	128751182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	160	681	0	ENST00000377970.2:c.719C>T	p.Ser240Phe	p.S240F	ENST00000377970	NM_002467.4	240	tCc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0056450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	84	421	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593558	48593558	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0056450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	82	205	0	ENST00000342988.3:c.1308+1G>A		p.X436_splice	ENST00000342988	NM_005359.5	436																																																																																
CARD11	84433	MSKCC	GRCh37	7	2946453	2946453	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368574818		P-0056450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	187	964	1	ENST00000396946.4:c.3284C>T	p.Thr1095Met	p.T1095M	ENST00000396946	NM_032415.4	1095	aCg/aTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244185	5244185	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774952239		P-0056450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	172	960	2	ENST00000357368.4:c.1297G>A	p.Val433Met	p.V433M	ENST00000357368	NM_002850.3	433	Gtg/Atg																																																																															
BCL6	604	MSKCC	GRCh37	3	187440347	187440347	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0056450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	126	604	0	ENST00000232014.4:c.2020C>T	p.Arg674Ter	p.R674*	ENST00000232014	NM_001130845.1	674	Cga/Tga																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266072	41266253	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTA	TCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTA	-			P-0056450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	50	377	0	ENST00000349496.5:c.70_241+10del		p.X24_splice	ENST00000349496	NM_001904.3	24																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0056534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	149	489	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991910	72991910	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	84	752	0	ENST00000268489.5:c.2135G>T	p.Arg712Leu	p.R712L	ENST00000268489	NM_006885.3	712	cGg/cTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914046	32914046	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80358777		P-0056534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	51	574	0	ENST00000380152.3:c.5554G>A	p.Val1852Ile	p.V1852I	ENST00000380152		1852	Gtt/Att																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429310	78429310	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0056534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	149	620	0	ENST00000370768.2:c.1132G>T	p.Glu378Ter	p.E378*	ENST00000370768	NM_003902.3	378	Gaa/Taa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180397	94180397	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0056534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	173	469	1	ENST00000323929.3:c.1771C>T	p.Gln591Ter	p.Q591*	ENST00000323929	NM_005591.3	591	Caa/Taa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198281595	198281595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	147	542	1	ENST00000335508.6:c.536G>T	p.Gly179Val	p.G179V	ENST00000335508	NM_012433.2	179	gGa/gTa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168716	32168716	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	198	881	0	ENST00000375023.3:c.4207T>C	p.Trp1403Arg	p.W1403R	ENST00000375023	NM_004557.3	1403	Tgg/Cgg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518189	8518190	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0056534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	62	574	0	ENST00000356435.5:c.1201_1202del	p.Arg401GlyfsTer41	p.R401Gfs*41	ENST00000356435		401	CGg/g																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8524925	8524925	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0056534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	91	374	0	ENST00000356435.5:c.679G>T	p.Glu227Ter	p.E227*	ENST00000356435		227	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0056538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	65	446	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs878854073		P-0056538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	104	567	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
ASXL2	55252	MSKCC	GRCh37	2	25964985	25964985	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	71	638	0	ENST00000435504.4:c.4221G>T	p.Met1407Ile	p.M1407I	ENST00000435504		1407	atG/atT																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573605	48573606	+	frameshift_variant	Frame_Shift_Ins	INS	AA	AA	TAGG			P-0056538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	40	262	0	ENST00000342988.3:c.189_190delinsTAGG	p.Asn64ArgfsTer31	p.N64Rfs*31	ENST00000342988	NM_005359.5	63	acAAat/acTAGGat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0055926-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			708	686	515	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0055926-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			457	260	569	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023592	27023592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055926-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			483	183	337	0	ENST00000324856.7:c.698C>T	p.Ser233Phe	p.S233F	ENST00000324856	NM_006015.4	233	tCc/tTc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911664	32911664	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs730881521		P-0055926-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			181	120	252	0	ENST00000380152.3:c.3172A>T	p.Lys1058Ter	p.K1058*	ENST00000380152		1058	Aaa/Taa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127259	55127260	+	splice_acceptor_variant,intron_variant	Splice_Site	DNP	CA	CA	AG			P-0055926-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			440	137	317	0	ENST00000257290.5:c.50-3_50-2delinsAG		p.X17_splice	ENST00000257290	NM_006206.4	17																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8497250	8497250	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs72694737		P-0056388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	111	209	9	ENST00000356435.5:c.2341A>G	p.Thr781Ala	p.T781A	ENST00000356435		781	Act/Gct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577514	7577514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	412	717	1	ENST00000269305.4:c.767C>T	p.Thr256Ile	p.T256I	ENST00000269305	NM_001126112.2	256	aCa/aTa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577392	64577392	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0056389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	245	724	1	ENST00000337652.1:c.190C>T	p.Gln64Ter	p.Q64*	ENST00000337652	NM_130803.2	64	Cag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101008	41101008	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0056389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	268	571	0	ENST00000373198.4:c.1348C>T	p.Arg450Ter	p.R450*	ENST00000373198	NM_133170.3	450	Cga/Tga																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0056425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	20	319	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0056425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	159	563	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
BTK	695	MSKCC	GRCh37	X	100611920	100611920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	75	736	0	ENST00000308731.7:c.1201G>A	p.Asp401Asn	p.D401N	ENST00000308731	NM_000061.2	401	Gac/Aac																																																																															
LATS2	26524	MSKCC	GRCh37	13	21553838	21553838	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	143	706	0	ENST00000382592.4:c.2764C>G	p.Gln922Glu	p.Q922E	ENST00000382592	NM_014572.2	922	Cag/Gag																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30129436	30129671	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	TGTGGTCATGCTCAGGATCGGCAATCCGGGCCAGGCCGAAATCACAAATCTGGAATCAGACCTAGCTGCTAAGCTCGGCGCTCAAGGCCTCTGCAGCCTAAGCAGTCACGCCCCCTTGTCTTTGCCTCCACTGTTCCCTTTGCTTGCAATGTTCTCCTGCCCAAGGCTTCTTCTACTGGTCACTGGAAGCCCCAGACCCTGGGGGAGGAGGGGACAGGTGCCCAACCCTCTGACCT	TGTGGTCATGCTCAGGATCGGCAATCCGGGCCAGGCCGAAATCACAAATCTGGAATCAGACCTAGCTGCTAAGCTCGGCGCTCAAGGCCTCTGCAGCCTAAGCAGTCACGCCCCCTTGTCTTTGCCTCCACTGTTCCCTTTGCTTGCAATGTTCTCCTGCCCAAGGCTTCTTCTACTGGTCACTGGAAGCCCCAGACCCTGGGGGAGGAGGGGACAGGTGCCCAACCCTCTGACCT	-			P-0056425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	112	1002	0	ENST00000263025.4:c.542_592del		p.X181_splice	ENST00000263025	NM_002746.2	181	aAGGTCAGAGGGTTGGGCACCTGTCCCCTCCTCCCCCAGGGTCTGGGGCTTCCAGTGACCAGTAGAAGAAGCCTTGGGCAGGAGAACATTGCAAGCAAAGGGAACAGTGGAGGCAAAGACAAGGGGGCGTGACTGCTTAGGCTGCAGAGGCCTTGAGCGCCGAGCTTAGCAGCTAGGTCTGATTCCAGATTTGTGATTTCGGCCTGGCCCGGATTGCCGATCCTGAGCATGACCACAcc/acc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89833549	89833550	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0056425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	81	358	0	ENST00000389301.3:c.2600dup	p.Phe868ValfsTer18	p.F868Vfs*18	ENST00000389301	NM_000135.2	867	aag/aaAg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624876	9624876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	48	625	1	ENST00000353224.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000353224	NM_177990.2	34	gGc/gTc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513330	44513330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	226	880	0	ENST00000291552.4:c.605G>A	p.Arg202His	p.R202H	ENST00000291552	NM_006758.2	202	cGt/cAt																																																																															
EP300	2033	MSKCC	GRCh37	22	41545147	41545147	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	96	691	0	ENST00000263253.7:c.2347G>T	p.Ala783Ser	p.A783S	ENST00000263253	NM_001429.3	783	Gct/Tct																																																																															
APC	324	MSKCC	GRCh37	5	112175621	112175621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	56	366	0	ENST00000257430.4:c.4330C>T	p.Gln1444Ter	p.Q1444*	ENST00000257430	NM_000038.5	1444	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0056426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	74	391	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0056426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	126	913	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610384	10610384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	179	1045	1	ENST00000171111.5:c.326C>T	p.Ala109Val	p.A109V	ENST00000171111	NM_203500.1	109	gCc/gTc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090791	5090791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	24	263	0	ENST00000381652.3:c.2939G>A	p.Arg980Lys	p.R980K	ENST00000381652	NM_004972.3	980	aGa/aAa																																																																															
MED12	9968	MSKCC	GRCh37	X	70343465	70343466	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0056426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	70	710	1	ENST00000374080.3:c.1639_1640delinsTT	p.Ala547Leu	p.A547L	ENST00000374080		547	GCa/TTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0056431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	358	853	3	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0056431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	62	275	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0056431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	363	988	1	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0056431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	121	467	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ABL1	25	MSKCC	GRCh37	9	133760442	133760442	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746334503		P-0056431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	310	971	0	ENST00000318560.5:c.2765C>T	p.Ala922Val	p.A922V	ENST00000318560	NM_005157.4	922	gCg/gTg																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125523731	125523731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	78	248	0	ENST00000428830.2:c.1324C>T	p.Arg442Trp	p.R442W	ENST00000428830	NM_001114121.2	442	Cgg/Tgg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298026	15298026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1380	74	1272	1	ENST00000263388.2:c.1730C>T	p.Thr577Ile	p.T577I	ENST00000263388	NM_000435.2	577	aCa/aTa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271727	38271727	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1679	107	1240	0	ENST00000425967.3:c.2222del	p.Phe741SerfsTer4	p.F741Sfs*4	ENST00000425967	NM_001174067.1	741	tTc/tc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0056435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	56	435	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43739588	43739588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	41	449	0	ENST00000382044.4:c.2812C>T	p.Pro938Ser	p.P938S	ENST00000382044	NM_001141980.1	938	Ccc/Tcc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0056500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	94	387	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0056500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	91	461	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0056500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	127	503	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0056500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	73	278	0				ENST00000310581	NM_198253.2																																																																																	
SOX9	6662	MSKCC	GRCh37	17	70120232	70120232	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	402	869	1	ENST00000245479.2:c.1234C>T	p.Gln412Ter	p.Q412*	ENST00000245479	NM_000346.3	412	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876658468		P-0056500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	188	803	0	ENST00000269305.4:c.577C>G	p.His193Asp	p.H193D	ENST00000269305	NM_001126112.2	193	Cat/Gat																																																																															
APC	324	MSKCC	GRCh37	5	112175706	112175706	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	180	397	0	ENST00000257430.4:c.4415del	p.Val1472GlufsTer35	p.V1472Efs*35	ENST00000257430	NM_000038.5	1472	gTa/ga																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458482	12458482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	99	767	0	ENST00000287820.6:c.1099G>A	p.Val367Ile	p.V367I	ENST00000287820	NM_015869.4	367	Gtt/Att																																																																															
APC	324	MSKCC	GRCh37	5	112174559	112174559	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	91	474	0	ENST00000257430.4:c.3268C>T	p.Gln1090Ter	p.Q1090*	ENST00000257430	NM_000038.5	1090	Caa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057736	27057736	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	221	913	0	ENST00000324856.7:c.1444C>T	p.Gln482Ter	p.Q482*	ENST00000324856	NM_006015.4	482	Cag/Tag																																																																															
WT1	7490	MSKCC	GRCh37	11	32456753	32456753	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1212035248		P-0056500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	138	671	0	ENST00000332351.3:c.139G>A	p.Glu47Lys	p.E47K	ENST00000332351	NM_024426.4	47	Gag/Aag																																																																															
PGR	5241	MSKCC	GRCh37	11	100998808	100998808	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757746136		P-0056500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	199	858	0	ENST00000325455.5:c.994G>A	p.Gly332Arg	p.G332R	ENST00000325455	NM_001202474.3	332	Ggg/Agg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231174	46231174	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0056500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	102	402	0	ENST00000334344.6:c.1094C>G	p.Ser365Ter	p.S365*	ENST00000334344	NM_152641.2	365	tCa/tGa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918228	50918228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	226	931	0	ENST00000440232.2:c.2545C>T	p.Arg849Cys	p.R849C	ENST00000440232	NM_002691.3	849	Cgc/Tgc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88651982	88651982	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			212	60	354	0	ENST00000372037.3:c.329G>T	p.Cys110Phe	p.C110F	ENST00000372037	NM_004329.2	110	tGc/tTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653803	89653803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			270	67	380	0	ENST00000371953.3:c.101C>T	p.Ala34Val	p.A34V	ENST00000371953	NM_000314.4	34	gCt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			391	74	473	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610503	81610503	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137908024		P-0009613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			353	85	483	1	ENST00000298171.2:c.2101C>T	p.Arg701Cys	p.R701C	ENST00000298171	NM_000369.2	701	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0009613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			405	149	824	1	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733235	40733235	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			494	249	758	1	ENST00000373198.4:c.3571T>A	p.Ser1191Thr	p.S1191T	ENST00000373198	NM_133170.3	1191	Tcc/Acc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591111	67591112	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAC			P-0009613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	78	362	0	ENST00000274335.5:c.1705_1707dup	p.Asp569dup	p.D569dup	ENST00000274335		569	-/GAC																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0009613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			281	69	366	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0009613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	43	407	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270529	98270530	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778175153		P-0056305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	143	391	2	ENST00000331920.6:c.114dup	p.Leu39AlafsTer51	p.L39Afs*51	ENST00000331920	NM_000264.3	38	-/G																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508605	106508605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	232	668	1	ENST00000359195.3:c.599C>T	p.Pro200Leu	p.P200L	ENST00000359195	NM_002649.2	200	cCg/cTg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206651615	206651615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	140	1040	0	ENST00000367120.3:c.925G>A	p.Val309Ile	p.V309I	ENST00000367120	NM_014002.3	309	Gtt/Att																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589310	28589310	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	22	391	0	ENST00000241453.7:c.2737T>C	p.Tyr913His	p.Y913H	ENST00000241453	NM_004119.2	913	Tat/Cat																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618920	37618920	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	125	724	0	ENST00000447079.4:c.596A>G	p.Lys199Arg	p.K199R	ENST00000447079	NM_015083.1	199	aAa/aGa																																																																															
ERF	2077	MSKCC	GRCh37	19	42754492	42754492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	83	946	0	ENST00000222329.4:c.248G>A	p.Arg83Gln	p.R83Q	ENST00000222329	NM_006494.2	83	cGg/cAg																																																																															
TERT	7015	MSKCC	GRCh37	5	1280317	1280317	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	174	1131	0	ENST00000310581.5:c.1906A>G	p.Met636Val	p.M636V	ENST00000310581	NM_198253.2	636	Atg/Gtg																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27777925	27777925	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	53	689	0	ENST00000369163.2:c.74C>G	p.Ala25Gly	p.A25G	ENST00000369163	NM_003536.2	25	gCg/gGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038523	47038523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	271	965	0	ENST00000329236.7:c.454C>T	p.Arg152Cys	p.R152C	ENST00000329236	NM_001204466.1	152	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0056460-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			135	83	323	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870851	12870852	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCGGCCTGCAGGAACCTCT			P-0056460-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	50	418	0	ENST00000228872.4:c.85_103dup	p.Pro35LeufsTer96	p.P35Lfs*96	ENST00000228872	NM_004064.3	26	-/TCGGCCTGCAGGAACCTCT																																																																															
STAG2	10735	MSKCC	GRCh37	X	123205045	123205045	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056460-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			86	153	268	0	ENST00000218089.9:c.2406del	p.Met803CysfsTer8	p.M803Cfs*8	ENST00000218089	NM_001042749.1	802	aTt/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs397516439		P-0056516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	220	871	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
TGFBR1	7046	MSKCC	GRCh37	9	101900330	101900330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	60	453	0	ENST00000374994.4:c.764G>A	p.Arg255His	p.R255H	ENST00000374994	NM_004612.2	255	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604828	48604842	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	TTTAGACTGAGGTCT	TTTAGACTGAGGTCT	-			P-0056516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	11	484	0	ENST00000342988.3:c.1654_*9del		p.*552*	ENST00000342988	NM_005359.5	550																																																																																
BARD1	580	MSKCC	GRCh37	2	215661812	215661812	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	49	448	0	ENST00000260947.4:c.188T>C	p.Leu63Ser	p.L63S	ENST00000260947	NM_000465.2	63	tTa/tCa																																																																															
APC	324	MSKCC	GRCh37	5	112174829	112174829	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	39	292	0	ENST00000257430.4:c.3538del	p.Ser1180ValfsTer2	p.S1180Vfs*2	ENST00000257430	NM_000038.5	1180	Agt/gt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0056518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	199	408	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0056518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	155	479	2	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0056518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	116	303	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0056518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	197	398	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0056518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	304	876	1	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717712	89717712	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782350		P-0056518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	28	480	0	ENST00000371953.3:c.737C>T	p.Pro246Leu	p.P246L	ENST00000371953	NM_000314.4	246	cCg/cTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117858	70117858	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	320	589	0	ENST00000245479.2:c.326T>C	p.Met109Thr	p.M109T	ENST00000245479	NM_000346.3	109	aTg/aCg																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194904	29194904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372203752		P-0056518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	40	787	0	ENST00000240100.2:c.824G>A	p.Arg275His	p.R275H	ENST00000240100	NM_001394.6	275	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0056522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	181	296	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306960	65306960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	209	459	0	ENST00000342505.4:c.2617C>T	p.Arg873Cys	p.R873C	ENST00000342505	NM_002227.2	873	Cgc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0056523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	273	497	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0056523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	391	686	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778773	3778773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	60	1040	0	ENST00000262367.5:c.6275C>T	p.Ser2092Leu	p.S2092L	ENST00000262367	NM_004380.2	2092	tCa/tTa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519896		P-0056525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	104	400	3	ENST00000281708.4:c.1514G>A	p.Arg505His	p.R505H	ENST00000281708	NM_033632.3	505	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	259	575	2	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0056525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	127	351	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913315		P-0056525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	23	961	1	ENST00000326873.7:c.580G>A	p.Asp194Asn	p.D194N	ENST00000326873	NM_000455.4	194	Gac/Aac																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25978892	25978893	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0056525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	188	435	0	ENST00000435504.4:c.1030_1031del	p.Ser344ArgfsTer3	p.S344Rfs*3	ENST00000435504		344	TCa/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7577528	7577532	+	protein_altering_variant	In_Frame_Del	DEL	GATGG	GATGG	CC			P-0056525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	601	742	1	ENST00000269305.4:c.749_753delinsGG	p.Pro250_Ile251delinsArg	p.P250_I251delinsR	ENST00000269305	NM_001126112.2	250	cCCATC/cGG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0056558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	70	683	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7978925	7978925	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397514532		P-0056558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	39	442	0	ENST00000319144.4:c.1642C>T	p.Arg548Trp	p.R548W	ENST00000319144	NM_001139.2	548	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	14	201	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554669	63554669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	68	634	1	ENST00000307078.5:c.70C>T	p.Pro24Ser	p.P24S	ENST00000307078	NM_004655.3	24	Ccc/Tcc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87325674	87325674	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	33	458	0	ENST00000277120.3:c.551T>C	p.Ile184Thr	p.I184T	ENST00000277120		184	aTt/aCt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	67	512	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894365		P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	10	466	1	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119932	70119932	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	133	386	0	ENST00000245479.2:c.934C>T	p.Gln312Ter	p.Q312*	ENST00000245479	NM_000346.3	312	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	115	463	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44928872	44928872	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs755440519		P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	12	226	0	ENST00000377967.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000377967	NM_021140.2	658	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	220	376	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120175	70120175	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	62	379	0	ENST00000245479.2:c.1177C>T	p.Gln393Ter	p.Q393*	ENST00000245479	NM_000346.3	393	Cag/Tag																																																																															
ALK	238	MSKCC	GRCh37	2	29474041	29474041	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs78723472		P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	231	758	0	ENST00000389048.3:c.2134G>A	p.Val712Met	p.V712M	ENST00000389048	NM_004304.4	712	Gtg/Atg																																																																															
MED12	9968	MSKCC	GRCh37	X	70339230	70339230	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	90	304	0	ENST00000374080.3:c.107T>C	p.Leu36Pro	p.L36P	ENST00000374080		36	cTg/cCg																																																																															
APC	324	MSKCC	GRCh37	5	112173582	112173582	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	69	328	0	ENST00000257430.4:c.2291T>G	p.Leu764Ter	p.L764*	ENST00000257430	NM_000038.5	764	tTa/tGa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81954864	81954864	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1345789580		P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	144	630	0	ENST00000359376.3:c.2297A>G	p.Asn766Ser	p.N766S	ENST00000359376	NM_002661.3	766	aAt/aGt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89874762	89874762	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	39	534	0	ENST00000389301.3:c.536T>A	p.Leu179His	p.L179H	ENST00000389301	NM_000135.2	179	cTt/cAt																																																																															
FLCN	201163	MSKCC	GRCh37	17	17117070	17117070	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	82	687	0	ENST00000285071.4:c.1639G>T	p.Val547Phe	p.V547F	ENST00000285071	NM_144997.5	547	Gtc/Ttc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38962456	38962456	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	19	325	0	ENST00000357387.3:c.1676A>G	p.Asn559Ser	p.N559S	ENST00000357387	NM_152756.3	559	aAt/aGt																																																																															
APC	324	MSKCC	GRCh37	5	112175661	112175662	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACCT			P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	91	355	0	ENST00000257430.4:c.4373_4376dup	p.Ala1460TyrfsTer3	p.A1460Yfs*3	ENST00000257430	NM_000038.5	1457	gca/gcACCTa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938432	44938435	+	frameshift_variant	Frame_Shift_Del	DEL	AATG	AATG	-			P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	15	293	0	ENST00000377967.4:c.2982_2985del	p.Glu995IlefsTer3	p.E995Ifs*3	ENST00000377967	NM_021140.2	994	AATGaa/aa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040707	47040707	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	83	379	0	ENST00000329236.7:c.1108C>T	p.Gln370Ter	p.Q370*	ENST00000329236	NM_001204466.1	370	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0046937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	328	570	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885975	111885975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	201	547	1	ENST00000341259.2:c.1597G>A	p.Glu533Lys	p.E533K	ENST00000341259	NM_005475.2	533	Gaa/Aaa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939053	36939053	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	67	619	0	ENST00000361632.4:c.656T>C	p.Leu219Pro	p.L219P	ENST00000361632		219	cTt/cCt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89724943	89725083	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCTGCAAAATGGAATAAAAAATCTGTTAAAAATATATTTCACTAAATAGTTTAAGATGAGTCATATTTGTGGGTTTTCATTTTAAATTTTCTTTCTCTAGGTGAAGCTGTACTTCACAAAAACAGTAGAGGAGCCGTCAA	ATCTGCAAAATGGAATAAAAAATCTGTTAAAAATATATTTCACTAAATAGTTTAAGATGAGTCATATTTGTGGGTTTTCATTTTAAATTTTCTTTCTCTAGGTGAAGCTGTACTTCACAAAAACAGTAGAGGAGCCGTCAA	-			P-0046937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	77	89	0	ENST00000371953.3:c.1027-98_1069del		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0046981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			556	140	359	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912660		P-0046981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			386	300	624	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609793	81609793	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	84	356	0	ENST00000298171.2:c.1391G>C	p.Gly464Ala	p.G464A	ENST00000298171	NM_000369.2	464	gGg/gCg																																																																															
EP300	2033	MSKCC	GRCh37	22	41568640	41568640	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			245	147	306	0	ENST00000263253.7:c.4590G>C	p.Glu1530Asp	p.E1530D	ENST00000263253	NM_001429.3	1530	gaG/gaC																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412943	63412943	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			696	121	715	0	ENST00000330258.3:c.224G>T	p.Gly75Val	p.G75V	ENST00000330258	NM_152424.3	75	gGg/gTg																																																																															
BTK	695	MSKCC	GRCh37	X	100608192	100608192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	71	348	0	ENST00000308731.7:c.1898G>A	p.Cys633Tyr	p.C633Y	ENST00000308731	NM_000061.2	633	tGc/tAc																																																																															
BARD1	580	MSKCC	GRCh37	2	215645700	215645700	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793050		P-0046981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	116	458	0	ENST00000260947.4:c.898C>T	p.Pro300Ser	p.P300S	ENST00000260947	NM_000465.2	300	Cct/Tct																																																																															
WT1	7490	MSKCC	GRCh37	11	32450165	32450165	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0046981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			619	41	497	0	ENST00000332351.3:c.647G>A	p.Gly216Asp	p.G216D	ENST00000332351	NM_024426.4	216	gGt/gAt																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202636	67202636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1127	98	515	1	ENST00000312629.5:c.1445G>A	p.Arg482His	p.R482H	ENST00000312629	NM_003952.2	482	cGc/cAc																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793087	33793088	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGG			P-0046981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			411	66	273	0	ENST00000498907.2:c.231_233dup	p.Leu78dup	p.L78dup	ENST00000498907	NM_004364.3	78	ctg/ctCCTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0055505-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			197	133	260	0				ENST00000310581	NM_198253.2																																																																																	
MED12	9968	MSKCC	GRCh37	X	70339254	70339254	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199469672		P-0055505-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			400	333	535	0	ENST00000374080.3:c.131G>A	p.Gly44Asp	p.G44D	ENST00000374080		44	gGt/gAt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779765	3779768	+	frameshift_variant	Frame_Shift_Del	DEL	TGAC	TGAC	-			P-0055505-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			494	314	778	0	ENST00000262367.5:c.5280_5283del	p.Ser1761ArgfsTer9	p.S1761Rfs*9	ENST00000262367	NM_004380.2	1760	caGTCA/ca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0055743-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			176	121	257	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0055743-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			491	336	721	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183211	56183211	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055743-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			380	148	286	0	ENST00000399503.3:c.4121A>G	p.Asn1374Ser	p.N1374S	ENST00000399503	NM_005921.1	1374	aAt/aGt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911258	32911258	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055743-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			387	57	385	0	ENST00000380152.3:c.2766C>G	p.Phe922Leu	p.F922L	ENST00000380152		922	ttC/ttG																																																																															
APC	324	MSKCC	GRCh37	5	112155043	112155043	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0055743-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			345	172	344	0	ENST00000257430.4:c.1312+2T>A		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
PTCH1	5727	MSKCC	GRCh37	9	98231370	98231370	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145766839		P-0055743-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			726	256	586	3	ENST00000331920.6:c.1913G>A	p.Arg638His	p.R638H	ENST00000331920	NM_000264.3	638	cGc/cAc																																																																															
AXL	558	MSKCC	GRCh37	19	41754647	41754647	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0055743-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			722	255	595	0	ENST00000301178.4:c.1634-1G>A		p.X545_splice	ENST00000301178	NM_021913.4	545																																																																																
INPP4A	3631	MSKCC	GRCh37	2	99163126	99163126	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055743-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			534	80	310	0	ENST00000074304.5:c.1132A>G	p.Lys378Glu	p.K378E	ENST00000074304	NM_001134224.1	378	Aag/Gag																																																																															
APC	324	MSKCC	GRCh37	5	112175021	112175022	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0055743-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			145	34	122	0	ENST00000257430.4:c.3734dup	p.Ala1246GlyfsTer10	p.A1246Gfs*10	ENST00000257430	NM_000038.5	1244	caa/cAaa																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1327788	1327788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055743-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			599	100	458	1	ENST00000381566.1:c.93G>T	p.Gln31His	p.Q31H	ENST00000381566		31	caG/caT																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152864447	152864447	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	82	89	0	ENST00000406277.2:c.79del	p.Arg27GlufsTer13	p.R27Efs*13	ENST00000406277	NM_152274.4	27	Cga/ga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249013	55249013	+	protein_altering_variant	In_Frame_Ins	INS	A	A	GGGT			P-0056275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	425	757	0	ENST00000275493.2:c.2311delinsGGGT	p.Asn771delinsGlyTyr	p.N771delinsGY	ENST00000275493	NM_005228.3	771	Aac/GGGTac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0056343-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			529	165	337	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578440	7578440	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0056343-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			692	269	895	0	ENST00000269305.4:c.490A>T	p.Lys164Ter	p.K164*	ENST00000269305	NM_001126112.2	164	Aag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056343-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	232	473	0	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101441	27101469	+	frameshift_variant	Frame_Shift_Del	DEL	CCACCAAGCATGCAGAATCACATTCCTCA	CCACCAAGCATGCAGAATCACATTCCTCA	-			P-0056343-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			572	388	679	0	ENST00000324856.7:c.4723_4751del	p.Pro1575GlyfsTer18	p.P1575Gfs*18	ENST00000324856	NM_006015.4	1575	CCACCAAGCATGCAGAATCACATTCCTCAg/g																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593439	48593439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056343-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			361	199	324	0	ENST00000342988.3:c.1192del	p.Trp398GlyfsTer17	p.W398Gfs*17	ENST00000342988	NM_005359.5	397	gTt/gt																																																																															
CARM1	10498	MSKCC	GRCh37	19	11030580	11030580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056343-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	147	687	0	ENST00000327064.4:c.1134G>A	p.Met378Ile	p.M378I	ENST00000327064	NM_199141.1	378	atG/atA																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030815	48030816	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0056343-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			321	70	216	0	ENST00000234420.5:c.3430_3431del	p.Met1144GlufsTer19	p.M1144Efs*19	ENST00000234420	NM_000179.2	1143	ctTAtg/cttg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98212182	98212182	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371346118		P-0056363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	53	277	0	ENST00000331920.6:c.3490G>A	p.Val1164Ile	p.V1164I	ENST00000331920	NM_000264.3	1164	Gtt/Att																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627485	14627485	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	40	552	0	ENST00000254322.2:c.585G>C	p.Lys195Asn	p.K195N	ENST00000254322	NM_006145.1	195	aaG/aaC																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62319052	62319052	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	100	789	0	ENST00000508582.2:c.1482G>C	p.Gln494His	p.Q494H	ENST00000508582		494	caG/caC																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551944	150551944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	97	347	0	ENST00000369026.2:c.63G>C	p.Leu21Phe	p.L21F	ENST00000369026	NM_021960.4	21	ttG/ttC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426576	49426596	+	inframe_deletion	In_Frame_Del	DEL	TGCTGCTGCTGTTGAAACTGC	TGCTGCTGCTGTTGAAACTGC	-			P-0056363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	130	792	0	ENST00000301067.7:c.11892_11912del	p.Phe3966_Gln3972del	p.F3966_Q3972del	ENST00000301067	NM_003482.3	3964	caGCAGTTTCAACAGCAGCAGCAa/caa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427650	49427655	+	inframe_deletion	In_Frame_Del	DEL	TGCTGT	TGCTGT	-			P-0056363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	101	548	0	ENST00000301067.7:c.10833_10838del	p.Gln3611_Gln3612del	p.Q3611_Q3612del	ENST00000301067	NM_003482.3	3611	caACAGCAc/cac																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62319034	62319034	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1196	103	771	0	ENST00000508582.2:c.1464G>T	p.Met488Ile	p.M488I	ENST00000508582		488	atG/atT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162923	47162923	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	193	343	0	ENST00000409792.3:c.3203C>G	p.Ser1068Cys	p.S1068C	ENST00000409792	NM_014159.6	1068	tCt/tGt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104007	69104007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1154	116	399	0	ENST00000288368.4:c.4397C>T	p.Ala1466Val	p.A1466V	ENST00000288368	NM_024870.2	1466	gCt/gTt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797340	135797340	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	31	249	0	ENST00000298552.3:c.529C>G	p.Leu177Val	p.L177V	ENST00000298552	NM_001162426.1	177	Ctc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	160	1156	0	ENST00000269305.4:c.403del	p.Cys135AlafsTer35	p.C135Afs*35	ENST00000269305	NM_001126112.2	135	Tgc/gc																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0056371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	271	728	0	ENST00000397752.3:c.3028+1G>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
NTRK1	4914	MSKCC	GRCh37	1	156849083	156849083	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	141	1041	0	ENST00000524377.1:c.1975G>T	p.Gly659Cys	p.G659C	ENST00000524377	NM_002529.3	659	Ggc/Tgc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176639028	176639028	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0056371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	43	648	0	ENST00000439151.2:c.3628T>A	p.Ser1210Thr	p.S1210T	ENST00000439151	NM_022455.4	1210	Tca/Aca																																																																															
ATRX	546	MSKCC	GRCh37	X	76939109	76939110	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0056371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	80	533	1	ENST00000373344.5:c.1638_1639delinsAA	p.Asp547Asn	p.D547N	ENST00000373344	NM_000489.3	546	ggGGat/ggAAat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420825	49420825	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757011865		P-0056372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	31	715	0	ENST00000301067.7:c.14924G>A	p.Arg4975His	p.R4975H	ENST00000301067	NM_003482.3	4975	cGt/cAt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0056374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	27	510	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0056374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	155	317	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231437	46231437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	110	280	2	ENST00000334344.6:c.1277C>T	p.Thr426Met	p.T426M	ENST00000334344	NM_152641.2	426	aCg/aTg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141572580	141572580	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1232302381		P-0056374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	128	537	1	ENST00000220592.5:c.490G>A	p.Val164Met	p.V164M	ENST00000220592	NM_012154.3	164	Gtg/Atg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7980381	7980381	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0056374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	211	785	0	ENST00000319144.4:c.1202A>C	p.Glu401Ala	p.E401A	ENST00000319144	NM_001139.2	401	gAg/gCg																																																																															
ATR	545	MSKCC	GRCh37	3	142224084	142224084	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	82	421	0	ENST00000350721.4:c.5093C>A	p.Ala1698Glu	p.A1698E	ENST00000350721	NM_001184.3	1698	gCa/gAa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913250		P-0056379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	127	349	0	ENST00000369535.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000369535	NM_002524.4	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0056379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	144	236	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs886039484		P-0056379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	558	690	0	ENST00000269305.4:c.643A>G	p.Ser215Gly	p.S215G	ENST00000269305	NM_001126112.2	215	Agt/Ggt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249440	153249440	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	131	456	0	ENST00000281708.4:c.1338G>T	p.Trp446Cys	p.W446C	ENST00000281708	NM_033632.3	446	tgG/tgT																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959240	2959240	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148354898		P-0056379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	281	633	0	ENST00000396946.4:c.2276G>A	p.Arg759Gln	p.R759Q	ENST00000396946	NM_032415.4	759	cGg/cAg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913236	39913236	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774089771		P-0056379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	290	261	0	ENST00000378444.4:c.4879G>A	p.Asp1627Asn	p.D1627N	ENST00000378444	NM_001123385.1	1627	Gat/Aat																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119875	70119875	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	108	641	0	ENST00000245479.2:c.877G>T	p.Glu293Ter	p.E293*	ENST00000245479	NM_000346.3	293	Gag/Tag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16097876	16097876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	22	154	0	ENST00000268712.3:c.8G>A	p.Ser3Asn	p.S3N	ENST00000268712	NM_006311.3	3	aGt/aAt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435083	110435083	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	96	829	0	ENST00000375856.3:c.3318G>C	p.Lys1106Asn	p.K1106N	ENST00000375856	NM_003749.2	1106	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912660		P-0056394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	232	777	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098973	178098973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	82	260	0	ENST00000397062.3:c.72G>C	p.Trp24Cys	p.W24C	ENST00000397062	NM_006164.4	24	tgG/tgC																																																																															
TP63	8626	MSKCC	GRCh37	3	189586422	189586422	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866267914		P-0056394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	135	408	1	ENST00000264731.3:c.1046G>A	p.Gly349Glu	p.G349E	ENST00000264731	NM_003722.4	349	gGa/gAa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902604	1902604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	246	781	1	ENST00000382891.5:c.223C>T	p.Pro75Ser	p.P75S	ENST00000382891	NM_133335.3	75	Cca/Tca																																																																															
BCOR	54880	MSKCC	GRCh37	X	39914747	39914747	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	71	442	0	ENST00000378444.4:c.4615G>C	p.Glu1539Gln	p.E1539Q	ENST00000378444	NM_001123385.1	1539	Gag/Cag																																																																															
NF2	4771	MSKCC	GRCh37	22	30051598	30051598	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	55	293	0	ENST00000338641.4:c.532C>T	p.Gln178Ter	p.Q178*	ENST00000338641	NM_000268.3	178	Cag/Tag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3652282	3652282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	185	690	0	ENST00000294008.3:c.787G>A	p.Glu263Lys	p.E263K	ENST00000294008	NM_032444.2	263	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425853	49425853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772665565		P-0056394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	245	846	0	ENST00000301067.7:c.12635G>A	p.Arg4212Gln	p.R4212Q	ENST00000301067	NM_003482.3	4212	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443774	49443775	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0056394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1273	268	1071	0	ENST00000301067.7:c.3596_3597del	p.Leu1199HisfsTer7	p.L1199Hfs*7	ENST00000301067	NM_003482.3	1199	cTC/c																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639359	3639359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1262	142	984	0	ENST00000294008.3:c.4280G>A	p.Cys1427Tyr	p.C1427Y	ENST00000294008	NM_032444.2	1427	tGc/tAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031981	10031981	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	88	690	0	ENST00000330684.3:c.842A>G	p.Tyr281Cys	p.Y281C	ENST00000330684	NM_001134407.1	281	tAc/tGc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47685247	47685247	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0056394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	60	351	1	ENST00000347630.2:c.703G>T	p.Glu235Ter	p.E235*	ENST00000347630	NM_001007230.1	235	Gag/Tag																																																																															
CUL3	8452	MSKCC	GRCh37	2	225343033	225343033	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	57	391	0	ENST00000264414.4:c.2059G>C	p.Glu687Gln	p.E687Q	ENST00000264414	NM_003590.4	687	Gag/Cag																																																																															
EP300	2033	MSKCC	GRCh37	22	41572372	41572372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	248	757	0	ENST00000263253.7:c.4901C>A	p.Ala1634Glu	p.A1634E	ENST00000263253	NM_001429.3	1634	gCa/gAa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117686863	117686863	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	38	277	0	ENST00000368508.3:c.2854C>G	p.Gln952Glu	p.Q952E	ENST00000368508	NM_002944.2	952	Caa/Gaa																																																																															
ATRX	546	MSKCC	GRCh37	X	76937401	76937401	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	45	358	0	ENST00000373344.5:c.3347C>G	p.Ser1116Cys	p.S1116C	ENST00000373344	NM_000489.3	1116	tCc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0055110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			147	58	907	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624275	89624275	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786204910		P-0055110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			91	13	401	2	ENST00000371953.3:c.49C>T	p.Gln17Ter	p.Q17*	ENST00000371953	NM_000314.4	17	Caa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099103	27099103	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			167	62	525	0	ENST00000324856.7:c.3524del	p.Pro1175HisfsTer5	p.P1175Hfs*5	ENST00000324856	NM_006015.4	1173	atC/at																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793406	18793406	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0055110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			56	22	430	0	ENST00000266497.5:c.4103A>T	p.Tyr1368Phe	p.Y1368F	ENST00000266497		1368	tAt/tTt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133814	55133814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			140	22	473	0	ENST00000257290.5:c.1027C>A	p.Pro343Thr	p.P343T	ENST00000257290	NM_006206.4	343	Cca/Aca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971201	21971214	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCATGACCTGCCAG	TCATGACCTGCCAG	-			P-0055110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			114	28	428	0	ENST00000304494.5:c.151-7_157del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0055380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	216	891	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0055670-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	49	328	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0055670-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	45	341	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0055670-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			723	83	752	0	ENST00000269305.4:c.389T>A	p.Leu130His	p.L130H	ENST00000269305	NM_001126112.2	130	cTc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591885	48591885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055670-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			441	60	446	0	ENST00000342988.3:c.1048G>T	p.Val350Phe	p.V350F	ENST00000342988	NM_005359.5	350	Gtt/Ttt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29002008	29002008	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141378173		P-0055670-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			455	58	397	0	ENST00000282397.4:c.1157G>A	p.Arg386His	p.R386H	ENST00000282397	NM_002019.4	386	cGt/cAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133215817	133215817	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0055670-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			543	121	610	0	ENST00000320574.5:c.5446A>C	p.Asn1816His	p.N1816H	ENST00000320574	NM_006231.2	1816	Aac/Cac																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5218514	5218514	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055670-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			777	108	689	0	ENST00000357368.4:c.3965A>G	p.Lys1322Arg	p.K1322R	ENST00000357368	NM_002850.3	1322	aAa/aGa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0055818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	86	759	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0055818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1	65	790	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025984	1025984	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0055818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	22	497	0	ENST00000358495.3:c.546G>T	p.Leu182Phe	p.L182F	ENST00000358495	NM_134424.2	182	ttG/ttT																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44527586	44527586	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	20	449	0	ENST00000291552.4:c.19T>G	p.Ser7Ala	p.S7A	ENST00000291552	NM_006758.2	7	Tcc/Gcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0056025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	8	262	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0056025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	40	769	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028616	12028616	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0056025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	22	275	0	ENST00000353533.5:c.819A>C	p.Glu273Asp	p.E273D	ENST00000353533	NM_003010.3	273	gaA/gaC																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792694	33792694	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	23	93	0	ENST00000498907.2:c.627G>T	p.Gln209His	p.Q209H	ENST00000498907	NM_004364.3	209	caG/caT																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913396		P-0056092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	47	268	0	ENST00000349496.5:c.95A>T	p.Asp32Val	p.D32V	ENST00000349496	NM_001904.3	32	gAc/gTc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0056092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	52	408	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0056098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	37	239	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs864622007		P-0056098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	120	356	1	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916957	178916957	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200018596		P-0056098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	51	324	0	ENST00000263967.3:c.344G>T	p.Arg115Leu	p.R115L	ENST00000263967	NM_006218.2	115	cGa/cTa																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625374	69625374	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782226740		P-0056098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1282	100	870	0	ENST00000334134.2:c.419C>T	p.Thr140Met	p.T140M	ENST00000334134	NM_005247.2	140	aCg/aTg																																																																															
MAX	4149	MSKCC	GRCh37	14	65544646	65544646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	97	585	0	ENST00000358664.4:c.280C>T	p.Leu94Phe	p.L94F	ENST00000358664	NM_002382.4	94	Ctt/Ttt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153253784	153253785	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0056098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	65	311	0	ENST00000281708.4:c.948dup	p.Asp317ArgfsTer15	p.D317Rfs*15	ENST00000281708	NM_033632.3	316	-/A																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149456961	149456961	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200702302		P-0056098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	91	497	1	ENST00000286301.3:c.767G>A	p.Arg256His	p.R256H	ENST00000286301	NM_005211.3	256	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0056101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	35	587	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519989		P-0056104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	211	574	0	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0056104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	174	362	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814930	139814930	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371121908		P-0056104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	108	636	1	ENST00000247668.2:c.923G>A	p.Arg308Gln	p.R308Q	ENST00000247668	NM_021138.3	308	cGg/cAg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061317	38061317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	286	663	0	ENST00000250448.2:c.672C>A	p.Phe224Leu	p.F224L	ENST00000250448	NM_004496.3	224	ttC/ttA																																																																															
FH	2271	MSKCC	GRCh37	1	241680598	241680598	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	112	335	0	ENST00000366560.3:c.151C>G	p.Arg51Gly	p.R51G	ENST00000366560	NM_000143.3	51	Cgg/Ggg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0056106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	19	464	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0056106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	175	832	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250996	10250996	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs776723837		P-0056106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	10	650	0	ENST00000340748.4:c.3484G>C	p.Asp1162His	p.D1162H	ENST00000340748		1162	Gac/Cac																																																																															
PMS2	5395	MSKCC	GRCh37	7	6045628	6045628	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs573374779		P-0056106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	13	142	0	ENST00000265849.7:c.58C>G	p.Arg20Gly	p.R20G	ENST00000265849	NM_000535.5	20	Cgg/Ggg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0056128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	38	530	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0056131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	13	290	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212537975	212537975	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267599192		P-0056131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	34	376	0	ENST00000342788.4:c.1630C>T	p.Arg544Trp	p.R544W	ENST00000342788	NM_005235.2	544	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604748	48604748	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0056131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	36	443	0	ENST00000342988.3:c.1570T>A	p.Trp524Arg	p.W524R	ENST00000342988	NM_005359.5	524	Tgg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0056131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	24	843	1	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576256	88576256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	31	599	0	ENST00000360948.2:c.1417G>A	p.Gly473Ser	p.G473S	ENST00000360948	NM_001012338.2	473	Ggt/Agt																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30129002	30129002	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0056131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	27	623	0	ENST00000263025.4:c.764A>C	p.Asn255Thr	p.N255T	ENST00000263025	NM_002746.2	255	aAc/aCc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438178	56438178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	46	908	0	ENST00000407977.2:c.815G>A	p.Cys272Tyr	p.C272Y	ENST00000407977		272	tGt/tAt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38314931	38314931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	15	681	0	ENST00000425967.3:c.133G>A	p.Val45Met	p.V45M	ENST00000425967	NM_001174067.1	45	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0056274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	177	454	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
AXL	558	MSKCC	GRCh37	19	41758858	41758858	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746561913		P-0056274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	66	737	1	ENST00000301178.4:c.1912G>A	p.Gly638Arg	p.G638R	ENST00000301178	NM_021913.4	638	Ggg/Agg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87322773	87322773	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	142	470	0	ENST00000277120.3:c.374A>G	p.Asn125Ser	p.N125S	ENST00000277120		125	aAc/aGc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903682	114903682	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0056274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	223	566	0	ENST00000543371.1:c.686G>T	p.Gly229Val	p.G229V	ENST00000543371	NM_001198531.1	229	gGa/gTa																																																																															
APC	324	MSKCC	GRCh37	5	112164656	112164656	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0056274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	139	248	0	ENST00000257430.4:c.1730T>G	p.Leu577Ter	p.L577*	ENST00000257430	NM_000038.5	577	tTa/tGa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710966	117710966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	26	353	0	ENST00000368508.3:c.1306C>T	p.Leu436Phe	p.L436F	ENST00000368508	NM_002944.2	436	Ctt/Ttt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080540	5080540	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	53	308	0	ENST00000381652.3:c.2292del	p.Gln764HisfsTer17	p.Q764Hfs*17	ENST00000381652	NM_004972.3	764	cAa/ca																																																																															
APC	324	MSKCC	GRCh37	5	112175775	112175775	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	144	381	0	ENST00000257430.4:c.4484del	p.Ser1495IlefsTer12	p.S1495Ifs*12	ENST00000257430	NM_000038.5	1495	aGt/at																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0056277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	83	624	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0056277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	110	771	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609570	81609570	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	85	570	0	ENST00000298171.2:c.1168T>C	p.Cys390Arg	p.C390R	ENST00000298171	NM_000369.2	390	Tgt/Cgt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2225409	2225409	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0056277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	58	482	0	ENST00000398665.3:c.3619A>T	p.Ile1207Phe	p.I1207F	ENST00000398665	NM_032482.2	1207	Atc/Ttc																																																																															
INHA	3623	MSKCC	GRCh37	2	220437338	220437338	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	118	1018	0	ENST00000243786.2:c.242C>G	p.Ser81Cys	p.S81C	ENST00000243786	NM_002191.3	81	tCc/tGc																																																																															
NF2	4771	MSKCC	GRCh37	22	30077518	30077518	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	70	492	0	ENST00000338641.4:c.1665G>C	p.Glu555Asp	p.E555D	ENST00000338641	NM_000268.3	555	gaG/gaC																																																																															
EP300	2033	MSKCC	GRCh37	22	41568518	41568518	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	63	422	0	ENST00000263253.7:c.4468G>C	p.Ala1490Pro	p.A1490P	ENST00000263253	NM_001429.3	1490	Gct/Cct																																																																															
KIT	3815	MSKCC	GRCh37	4	55603443	55603443	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0056277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	84	280	0	ENST00000288135.5:c.2799T>G	p.Asn933Lys	p.N933K	ENST00000288135	NM_000222.2	933	aaT/aaG																																																																															
CDK6	1021	MSKCC	GRCh37	7	92244497	92244497	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0056277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	68	455	0	ENST00000265734.4:c.938A>C	p.His313Pro	p.H313P	ENST00000265734	NM_001259.6	313	cAc/cCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0056279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	351	378	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	585	831	0	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0056279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	473	858	1	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098823	178098823	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0056279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	391	651	0	ENST00000397062.3:c.222A>C	p.Leu74Phe	p.L74F	ENST00000397062	NM_006164.4	74	ttA/ttC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0056295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	21	370	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0056295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	21	524	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35875685	35875685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	11	295	0	ENST00000303115.3:c.872G>T	p.Arg291Ile	p.R291I	ENST00000303115	NM_002185.3	291	aGa/aTa																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246027125	246027125	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	20	637	0	ENST00000388985.4:c.877del	p.Ile293LeufsTer4	p.I293Lfs*4	ENST00000388985		293	Att/tt																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137522040	137522041	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0056295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	13	244	0	ENST00000367739.4:c.838dup	p.Ser280LysfsTer22	p.S280Kfs*22	ENST00000367739	NM_000416.2	280	agc/aAgc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670468	134670468	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1404562506		P-0056295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	12	592	0	ENST00000398015.3:c.379G>A	p.Ala127Thr	p.A127T	ENST00000398015	NM_004441.4	127	Gcc/Acc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420669	49420669	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774403945		P-0056295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	18	688	0	ENST00000301067.7:c.15080G>A	p.Arg5027Gln	p.R5027Q	ENST00000301067	NM_003482.3	5027	cGa/cAa																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121096	29121096	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	11	586	1	ENST00000328354.6:c.461del	p.Asn154ThrfsTer7	p.N154Tfs*7	ENST00000328354	NM_007194.3	154	aAc/ac																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435190	110435190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	15	521	0	ENST00000375856.3:c.3211G>A	p.Asp1071Asn	p.D1071N	ENST00000375856	NM_003749.2	1071	Gac/Aac																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343639	343639	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141628516		P-0056295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	12	869	0	ENST00000262320.3:c.2035C>T	p.Leu679Phe	p.L679F	ENST00000262320	NM_003502.3	679	Ctc/Ttc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349976	89349976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	18	847	1	ENST00000301030.4:c.2974G>A	p.Asp992Asn	p.D992N	ENST00000301030	NM_001256183.1	992	Gac/Aac																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905103	50905103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	10	930	0	ENST00000440232.2:c.385G>A	p.Gly129Arg	p.G129R	ENST00000440232	NM_002691.3	129	Ggg/Agg																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29197673	29197673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	19	716	0	ENST00000240100.2:c.521G>A	p.Ser174Asn	p.S174N	ENST00000240100	NM_001394.6	174	aGt/aAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0056302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	156	640	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0056302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	37	297	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0056309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	106	453	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0056309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	362	876	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692790	89692790	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	82	394	0	ENST00000371953.3:c.274G>C	p.Asp92His	p.D92H	ENST00000371953	NM_000314.4	92	Gac/Cac																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724664	43724664	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	263	804	0	ENST00000382044.4:c.3403G>C	p.Glu1135Gln	p.E1135Q	ENST00000382044	NM_001141980.1	1135	Gaa/Caa																																																																															
KDR	3791	MSKCC	GRCh37	4	55968579	55968579	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	125	628	0	ENST00000263923.4:c.2084del	p.Pro695LeufsTer14	p.P695Lfs*14	ENST00000263923	NM_002253.2	695	cCt/ct																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838393	156838393	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0056309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1223	441	1015	0	ENST00000524377.1:c.671A>T	p.Gln224Leu	p.Q224L	ENST00000524377	NM_002529.3	224	cAg/cTg																																																																															
RB1	5925	MSKCC	GRCh37	13	49050907	49050907	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	140	524	0	ENST00000267163.4:c.2592del	p.Gly865GlufsTer8	p.G865Efs*8	ENST00000267163	NM_000321.2	864	gAa/ga																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465531	99465531	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	249	668	0	ENST00000268035.6:c.2356G>C	p.Glu786Gln	p.E786Q	ENST00000268035	NM_000875.3	786	Gag/Cag																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437286	52437286	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	345	963	0	ENST00000460680.1:c.1758C>G	p.Ile586Met	p.I586M	ENST00000460680	NM_004656.3	586	atC/atG																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439152	52439152	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	325	906	0	ENST00000460680.1:c.1090C>G	p.His364Asp	p.H364D	ENST00000460680	NM_004656.3	364	Cac/Gac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467616	66467616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	78	413	0	ENST00000273854.3:c.653G>A	p.Gly218Asp	p.G218D	ENST00000273854	NM_004439.5	218	gGt/gAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70347939	70347939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	337	782	0	ENST00000374080.3:c.3178C>T	p.His1060Tyr	p.H1060Y	ENST00000374080		1060	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0046936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	418	590	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
ATR	545	MSKCC	GRCh37	3	142238542	142238542	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148064542		P-0046936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	38	216	0	ENST00000350721.4:c.4351C>T	p.Arg1451Trp	p.R1451W	ENST00000350721	NM_001184.3	1451	Cgg/Tgg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1956917	1956917	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761204359		P-0046936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	204	652	1	ENST00000382891.5:c.2368G>A	p.Val790Ile	p.V790I	ENST00000382891	NM_133335.3	790	Gtt/Att																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0055925-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			297	494	616	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0055925-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			369	266	451	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524486	44524486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055925-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			195	82	220	0	ENST00000291552.4:c.71T>C	p.Ile24Thr	p.I24T	ENST00000291552	NM_006758.2	24	aTt/aCt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134290	2134290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055925-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1355	280	867	0	ENST00000219476.3:c.4067G>A	p.Gly1356Asp	p.G1356D	ENST00000219476	NM_000548.3	1356	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435269	49435269	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374216845		P-0055925-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			620	235	838	0	ENST00000301067.7:c.6284G>A	p.Arg2095His	p.R2095H	ENST00000301067	NM_003482.3	2095	cGt/cAt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222546	2222546	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0055925-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			795	703	788	0	ENST00000326181.6:c.740T>G	p.Leu247Arg	p.L247R	ENST00000326181	NM_032271.2	247	cTg/cGg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439921	56439921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055925-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			290	411	581	0	ENST00000407977.2:c.671C>T	p.Pro224Leu	p.P224L	ENST00000407977		224	cCc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0056183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	45	359	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587782197		P-0056183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	83	914	0	ENST00000269305.4:c.434T>C	p.Leu145Pro	p.L145P	ENST00000269305	NM_001126112.2	145	cTg/cCg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974744	21974775	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	-			P-0056183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	30	338	0	ENST00000304494.5:c.52_83del	p.Thr18AlafsTer15	p.T18Afs*15	ENST00000304494	NM_000077.4	18	ACGGCCGCGGCCCGGGGTCGGGTAGAGGAGGTg/g																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134270	11134270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs797045981		P-0056183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	66	630	1	ENST00000344626.4:c.2936G>A	p.Arg979Gln	p.R979Q	ENST00000344626	NM_003072.3	979	cGa/cAa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44870205	44870205	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0056183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	32	298	0	ENST00000377967.4:c.385-1G>T		p.X129_splice	ENST00000377967	NM_021140.2	129																																																																																
FLT1	2321	MSKCC	GRCh37	13	28901619	28901619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	33	328	0	ENST00000282397.4:c.2776G>A	p.Asp926Asn	p.D926N	ENST00000282397	NM_002019.4	926	Gac/Aac																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10267094	10267094	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	48	426	0	ENST00000340748.4:c.1324A>G	p.Ile442Val	p.I442V	ENST00000340748		442	Atc/Gtc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732925	30732925	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0056183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	75	362	0	ENST00000359013.4:c.1613T>G	p.Val538Gly	p.V538G	ENST00000359013	NM_001024847.2	538	gTg/gGg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111499	8111500	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0056184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	142	606	0	ENST00000346208.3:c.987dup	p.Arg330GlufsTer22	p.R330Efs*22	ENST00000346208		329	agg/aGgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056199	27056199	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	158	579	0	ENST00000324856.7:c.1196del	p.Asn399ThrfsTer34	p.N399Tfs*34	ENST00000324856	NM_006015.4	399	Aac/ac																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839730	27839730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	90	591	0	ENST00000328488.2:c.364C>T	p.Pro122Ser	p.P122S	ENST00000328488	NM_003533.2	122	Cct/Tct																																																																															
ROS1	6098	MSKCC	GRCh37	6	117709156	117709156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	49	369	0	ENST00000368508.3:c.1801G>A	p.Gly601Ser	p.G601S	ENST00000368508	NM_002944.2	601	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0056185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	582	721	2	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782006		P-0056185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	591	737	1	ENST00000269305.4:c.859G>A	p.Glu287Lys	p.E287K	ENST00000269305	NM_001126112.2	287	Gag/Aag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0056185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	470	802	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061450	38061450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	257	470	0	ENST00000250448.2:c.539C>T	p.Thr180Ile	p.T180I	ENST00000250448	NM_004496.3	180	aCc/aTc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575069	64575069	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	339	540	1	ENST00000337652.1:c.753del	p.Ile252LeufsTer34	p.I252Lfs*34	ENST00000337652	NM_130803.2	251	tcC/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576870	7576873	+	frameshift_variant	Frame_Shift_Del	DEL	CTCC	CTCC	TCT			P-0056185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	464	679	2	ENST00000269305.4:c.973_976delinsAGA	p.Gly325ArgfsTer20	p.G325Rfs*20	ENST00000269305	NM_001126112.2	325	GGAGaa/AGAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0056187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	660	744	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0056187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	102	234	1	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953017	2953017	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064795307		P-0056187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1743	122	806	0	ENST00000396946.4:c.2923C>T	p.Arg975Trp	p.R975W	ENST00000396946	NM_032415.4	975	Cgg/Tgg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65332611	65332611	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs568014073		P-0056187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	166	316	0	ENST00000342505.4:c.928G>A	p.Val310Ile	p.V310I	ENST00000342505	NM_002227.2	310	Gtt/Att																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30133057	30133057	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	302	331	2	ENST00000331968.5:c.544C>A	p.Leu182Met	p.L182M	ENST00000331968	NM_002742.2	182	Ctg/Atg																																																																															
MAX	4149	MSKCC	GRCh37	14	65544717	65544717	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0056187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	81	613	0	ENST00000358664.4:c.209A>G	p.Tyr70Cys	p.Y70C	ENST00000358664	NM_002382.4	70	tAt/tGt																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643579	38643580	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0056187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	149	544	3	ENST00000299084.4:c.1052_1053dup	p.Cys352AsnfsTer55	p.C352Nfs*55	ENST00000299084	NM_152594.2	350	gga/ggAAa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530109	63530109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	585	571	10	ENST00000307078.5:c.2326C>T	p.Pro776Ser	p.P776S	ENST00000307078	NM_004655.3	776	Cca/Tca																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119937	70119938	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACCTA			P-0056187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	458	503	5	ENST00000245479.2:c.940_944dup	p.Tyr315Ter	p.Y315*	ENST00000245479	NM_000346.3	313	-/ACCTA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573639	48573639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	150	311	0	ENST00000342988.3:c.223C>T	p.Gln75Ter	p.Q75*	ENST00000342988	NM_005359.5	75	Cag/Tag																																																																															
AXL	558	MSKCC	GRCh37	19	41758769	41758769	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	345	854	0	ENST00000301178.4:c.1823C>G	p.Ser608Cys	p.S608C	ENST00000301178	NM_021913.4	608	tCt/tGt																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73108216	73108216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	27	63	0	ENST00000356692.5:c.316G>A	p.Glu106Lys	p.E106K	ENST00000356692		106	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175073	112175074	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0056187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	31	137	0	ENST00000257430.4:c.3784dup	p.Tyr1262LeufsTer14	p.Y1262Lfs*14	ENST00000257430	NM_000038.5	1261	act/acTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0056188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	230	682	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs926053251		P-0056188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	174	511	0	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247373	153247373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	61	218	2	ENST00000281708.4:c.1429G>A	p.Gly477Ser	p.G477S	ENST00000281708	NM_033632.3	477	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0056188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	130	214	0	ENST00000257430.4:c.4067C>A	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247172	153247172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	67	240	0	ENST00000281708.4:c.1630G>T	p.Val544Phe	p.V544F	ENST00000281708	NM_033632.3	544	Gtc/Ttc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224214	36224214	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774855256		P-0056188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	188	604	0	ENST00000222270.7:c.6764C>T	p.Pro2255Leu	p.P2255L	ENST00000222270	NM_014727.1	2255	cCg/cTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109702	115109702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	262	878	1	ENST00000257566.3:c.2176C>T	p.Arg726Trp	p.R726W	ENST00000257566	NM_016569.3	726	Cgg/Tgg																																																																															
IRF4	3662	MSKCC	GRCh37	6	405131	405131	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0056188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	159	485	0	ENST00000380956.4:c.1212+1G>A		p.X404_splice	ENST00000380956	NM_001195286.1	404																																																																																
TGFBR1	7046	MSKCC	GRCh37	9	101891259	101891259	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	47	395	0	ENST00000374994.4:c.220G>T	p.Glu74Ter	p.E74*	ENST00000374994	NM_004612.2	74	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0056191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	157	368	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962846	2962846	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0056191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	500	876	0	ENST00000396946.4:c.2062C>T	p.Arg688Ter	p.R688*	ENST00000396946	NM_032415.4	688	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1060501201		P-0056191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	371	686	0	ENST00000269305.4:c.773A>G	p.Glu258Gly	p.E258G	ENST00000269305	NM_001126112.2	258	gAa/gGa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591246	67591246	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0056191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	9	333	0	ENST00000274335.5:c.1746-2A>T		p.X582_splice	ENST00000274335		582																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49435269	49435269	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374216845		P-0056191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	223	872	2	ENST00000301067.7:c.6284G>A	p.Arg2095His	p.R2095H	ENST00000301067	NM_003482.3	2095	cGt/cAt																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480594	50480594	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	231	427	0	ENST00000394963.4:c.464G>T	p.Arg155Met	p.R155M	ENST00000394963	NM_003076.4	155	aGg/aTg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554735	63554736	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0056191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	107	433	0	ENST00000307078.5:c.2_3dup	p.Ser2Ter	p.S2*	ENST00000307078	NM_004655.3	1	-/TG																																																																															
CARM1	10498	MSKCC	GRCh37	19	11032405	11032405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	228	909	0	ENST00000327064.4:c.1799C>T	p.Pro600Leu	p.P600L	ENST00000327064	NM_199141.1	600	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112174694	112174694	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	109	268	0	ENST00000257430.4:c.3403del	p.Tyr1135MetfsTer30	p.Y1135Mfs*30	ENST00000257430	NM_000038.5	1135	Tat/at																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52692233	52692233	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	102	331	0	ENST00000394830.3:c.627del	p.Lys210AsnfsTer14	p.K210Nfs*14	ENST00000394830	NM_018313.4	209	caG/ca																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52692246	52692246	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	146	358	0	ENST00000394830.3:c.614G>T	p.Ser205Ile	p.S205I	ENST00000394830	NM_018313.4	205	aGc/aTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453137	140453138	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTG			P-0056194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	194	338	0	ENST00000288602.6:c.1797_1798insCAC	p.Thr599_Val600insHis	p.T599_V600insH	ENST00000288602	NM_004333.4	599	-/CAC																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44937745	44937745	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0056194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	184	481	0	ENST00000377967.4:c.2933A>T	p.Lys978Met	p.K978M	ENST00000377967	NM_021140.2	978	aAg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0056196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	196	716	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0056196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	25	303	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0056196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	21	330	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945382	151945382	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	27	405	0	ENST00000262189.6:c.2137del	p.Glu713AsnfsTer5	p.E713Nfs*5	ENST00000262189	NM_170606.2	713	Gaa/aa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016633	12016633	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0056196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	52	321	0	ENST00000353533.5:c.769T>A	p.Ser257Thr	p.S257T	ENST00000353533	NM_003010.3	257	Tct/Act																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289025	33289025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	90	648	0	ENST00000374542.5:c.527C>T	p.Ser176Phe	p.S176F	ENST00000374542	NM_001141970.1	176	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0056204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	78	415	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0056204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	115	489	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911622	114911622	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	45	559	0	ENST00000543371.1:c.1140C>G	p.Ile380Met	p.I380M	ENST00000543371	NM_001198531.1	380	atC/atG																																																																															
ATM	472	MSKCC	GRCh37	11	108186745	108186745	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0056204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	74	424	0	ENST00000278616.4:c.6103A>C	p.Thr2035Pro	p.T2035P	ENST00000278616	NM_000051.3	2035	Aca/Cca																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120886	94120886	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0056204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	45	371	1	ENST00000369303.4:c.165G>T	p.Trp55Cys	p.W55C	ENST00000369303	NM_004440.3	55	tgG/tgT																																																																															
CARD11	84433	MSKCC	GRCh37	7	2974182	2974182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	120	854	0	ENST00000396946.4:c.1423G>T	p.Asp475Tyr	p.D475Y	ENST00000396946	NM_032415.4	475	Gac/Tac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0056318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	55	452	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs886039484		P-0056318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	69	760	0	ENST00000269305.4:c.643A>G	p.Ser215Gly	p.S215G	ENST00000269305	NM_001126112.2	215	Agt/Ggt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341925	8341925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	28	415	0	ENST00000356435.5:c.4715G>A	p.Arg1572Lys	p.R1572K	ENST00000356435		1572	aGa/aAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0056321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	16	456	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94219175	94219175	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs779269083		P-0049138-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	22	291	1	ENST00000323929.3:c.229G>T	p.Glu77Ter	p.E77*	ENST00000323929	NM_005591.3	77	Gag/Tag																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703691	47703691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049138-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			420	41	294	0	ENST00000233146.2:c.2191G>A	p.Glu731Lys	p.E731K	ENST00000233146	NM_000251.2	731	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0055798-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			411	101	481	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579579	7579580	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCAA			P-0055798-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			391	116	745	0	ENST00000269305.4:c.103_107dup	p.Ser37CysfsTer9	p.S37Cfs*9	ENST00000269305	NM_001126112.2	36	ccg/ccTTGCCg																																																																															
APC	324	MSKCC	GRCh37	5	112174580	112174580	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	68	467	0	ENST00000257430.4:c.3289G>T	p.Glu1097Ter	p.E1097*	ENST00000257430	NM_000038.5	1097	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0056083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	287	801	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956778	68956778	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746227590		P-0056083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	77	667	0	ENST00000288368.4:c.896G>A	p.Arg299Gln	p.R299Q	ENST00000288368	NM_024870.2	299	cGg/cAg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39584461	39584461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	60	431	0	ENST00000262039.4:c.1126G>A	p.Val376Met	p.V376M	ENST00000262039	NM_002647.2	376	Gtg/Atg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259343	89259343	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	43	490	0	ENST00000336596.2:c.487A>G	p.Lys163Glu	p.K163E	ENST00000336596	NM_005233.5	163	Aag/Gag																																																																															
ABL1	25	MSKCC	GRCh37	9	133760199	133760199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	87	621	0	ENST00000318560.5:c.2522C>T	p.Ala841Val	p.A841V	ENST00000318560	NM_005157.4	841	gCc/gTc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	88	325	1	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	150	360	0	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	135	360	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	208	305	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	89	229	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223796	53223796	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	191	920	1	ENST00000375401.3:c.3563G>C	p.Cys1188Ser	p.C1188S	ENST00000375401	NM_004187.3	1188	tGt/tCt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	155	685	8	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	144	556	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	71	225	0	ENST00000303115.3:c.361del	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	164	698	8	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435256	18435256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	85	274	0	ENST00000266497.5:c.241G>A	p.Ala81Thr	p.A81T	ENST00000266497		81	Gca/Aca																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287469	46287469	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	114	316	0	ENST00000334344.6:c.5333del	p.Asn1778IlefsTer13	p.N1778Ifs*13	ENST00000334344	NM_152641.2	1776	ttA/tt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	140	318	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636729	8636729	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	110	308	0	ENST00000356435.5:c.180del	p.Gly61GlufsTer11	p.G61Efs*11	ENST00000356435		60	aaA/aa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593507	48593507	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1367209662		P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	91	260	2	ENST00000342988.3:c.1258C>T	p.Arg420Cys	p.R420C	ENST00000342988	NM_005359.5	420	Cgt/Tgt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	123	426	7	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348151	89348151	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs891050032		P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	193	819	0	ENST00000301030.4:c.4799G>A	p.Arg1600Gln	p.R1600Q	ENST00000301030	NM_001256183.1	1600	cGg/cAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630605	187630605	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	204	573	1	ENST00000441802.2:c.377del	p.Asn126IlefsTer20	p.N126Ifs*20	ENST00000441802	NM_005245.3	126	aAt/at																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348998	11348998	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	138	398	1	ENST00000332029.2:c.338del	p.Phe113SerfsTer5	p.F113Sfs*5	ENST00000332029	NM_003745.1	113	tTc/tc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323352	31323352	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1428341966		P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	116	510	0	ENST00000412585.2:c.637G>A	p.Val213Met	p.V213M	ENST00000412585	NM_005514.6	213	Gtg/Atg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224533	36224533	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758088530		P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	224	934	1	ENST00000222270.7:c.6995G>A	p.Arg2332His	p.R2332H	ENST00000222270	NM_014727.1	2332	cGt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218451	36218451	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	101	671	0	ENST00000222270.7:c.4235del	p.Gly1412AlafsTer10	p.G1412Afs*10	ENST00000222270	NM_014727.1	1410	caG/ca																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187222	38187222	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	253	799	1	ENST00000317025.8:c.1255del	p.Thr419ProfsTer8	p.T419Pfs*8	ENST00000317025	NM_023034.1	419	Acc/cc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806605	1806605	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17884368		P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	175	808	0	ENST00000260795.2:c.1321G>A	p.Ala441Thr	p.A441T	ENST00000260795		441	Gca/Aca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101453	27101453	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	190	706	1	ENST00000324856.7:c.4735C>T	p.Gln1579Ter	p.Q1579*	ENST00000324856	NM_006015.4	1579	Cag/Tag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900353	3900353	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	160	626	0	ENST00000262367.5:c.743del	p.Pro248ArgfsTer3	p.P248Rfs*3	ENST00000262367	NM_004380.2	248	cCg/cg																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2097756	2097756	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	159	605	0	ENST00000219066.1:c.93del	p.Cys32ValfsTer24	p.C32Vfs*24	ENST00000219066	NM_002528.5	31	ggG/gg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229205	36229205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	101	575	1	ENST00000222270.7:c.7895G>A	p.Arg2632His	p.R2632H	ENST00000222270	NM_014727.1	2632	cGc/cAc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660270	227660270	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	28	617	0	ENST00000305123.5:c.3185del	p.Gly1062AlafsTer8	p.G1062Afs*8	ENST00000305123	NM_005544.2	1062	gGc/gc																																																																															
ATM	472	MSKCC	GRCh37	11	108126975	108126975	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs565622131		P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	211	571	0	ENST00000278616.4:c.2158C>T	p.Arg720Cys	p.R720C	ENST00000278616	NM_000051.3	720	Cgt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993348	72993348	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759852645		P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	200	776	0	ENST00000268489.5:c.697G>A	p.Val233Met	p.V233M	ENST00000268489	NM_006885.3	233	Gtg/Atg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10252856	10252856	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370786558		P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	154	692	1	ENST00000340748.4:c.3109G>A	p.Ala1037Thr	p.A1037T	ENST00000340748		1037	Gca/Aca																																																																															
FANCC	2176	MSKCC	GRCh37	9	97887408	97887408	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745910444		P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	165	488	0	ENST00000289081.3:c.956C>T	p.Thr319Met	p.T319M	ENST00000289081	NM_000136.2	319	aCg/aTg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683208	88683209	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	117	424	0	ENST00000372037.3:c.1426_1427dup	p.Lys477SerfsTer22	p.K477Sfs*22	ENST00000372037	NM_004329.2	473	gtt/gtTGt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63816929	63816930	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	65	208	2	ENST00000279873.7:c.906dup	p.Val303SerfsTer4	p.V303Sfs*4	ENST00000279873	NM_032199.2	300	-/A																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259405	16259405	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	17	403	0	ENST00000375759.3:c.6670A>G	p.Asn2224Asp	p.N2224D	ENST00000375759	NM_015001.2	2224	Aat/Gat																																																																															
MPL	4352	MSKCC	GRCh37	1	43814636	43814636	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	138	495	0	ENST00000372470.3:c.1431G>C	p.Trp477Cys	p.W477C	ENST00000372470	NM_005373.2	477	tgG/tgC																																																																															
TET1	80312	MSKCC	GRCh37	10	70442644	70442644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	178	502	0	ENST00000373644.4:c.4966C>T	p.Arg1656Cys	p.R1656C	ENST00000373644	NM_030625.2	1656	Cgt/Tgt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114901035	114901035	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	28	546	0	ENST00000543371.1:c.647del	p.Pro216HisfsTer9	p.P216Hfs*9	ENST00000543371	NM_001198531.1	215	aaC/aa																																																																															
SESN3	143686	MSKCC	GRCh37	11	94911020	94911020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	165	545	0	ENST00000536441.1:c.1110C>A	p.Asp370Glu	p.D370E	ENST00000536441	NM_144665.3	370	gaC/gaA																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246374	46246374	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1174556277		P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	101	312	0	ENST00000334344.6:c.4468G>T	p.Gly1490Ter	p.G1490*	ENST00000334344	NM_152641.2	1490	Gga/Tga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907487	32907487	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	79	214	0	ENST00000380152.3:c.1875del	p.Phe625LeufsTer19	p.F625Lfs*19	ENST00000380152		624	gcT/gc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73340142	73340145	+	frameshift_variant	Frame_Shift_Del	DEL	GTGA	GTGA	-			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	87	253	0	ENST00000377767.4:c.1935_1938del	p.His646IlefsTer3	p.H646Ifs*3	ENST00000377767	NM_014953.3	645	acTCAC/ac																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226048	2226048	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	36	727	1	ENST00000326181.6:c.1747-2A>G		p.X583_splice	ENST00000326181	NM_032271.2	583																																																																																
ANKRD11	29123	MSKCC	GRCh37	16	89348949	89348949	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765151001		P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	158	842	0	ENST00000301030.4:c.4001C>T	p.Pro1334Leu	p.P1334L	ENST00000301030	NM_001256183.1	1334	cCg/cTg																																																																															
RARA	5914	MSKCC	GRCh37	17	38512389	38512389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1055195329		P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	160	621	0	ENST00000254066.5:c.1300G>A	p.Gly434Arg	p.G434R	ENST00000254066	NM_000964.3	434	Ggg/Agg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47677763	47677763	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761155742		P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	136	401	0	ENST00000347630.2:c.1102C>T	p.Arg368Cys	p.R368C	ENST00000347630	NM_001007230.1	368	Cgc/Tgc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19258551	19258551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	168	879	1	ENST00000162023.5:c.349G>A	p.Ala117Thr	p.A117T	ENST00000162023		117	Gca/Aca																																																																															
CASP8	841	MSKCC	GRCh37	2	202149689	202149689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	153	503	0	ENST00000358485.4:c.1130G>A	p.Gly377Glu	p.G377E	ENST00000358485	NM_001080125.1	377	gGa/gAa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067499	37067499	+	splice_donor_variant	Splice_Site	SNP	G	G	C	rs267607825		P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	248	447	0	ENST00000231790.2:c.1409+1G>C		p.X470_splice	ENST00000231790	NM_000249.3	470																																																																																
SETD2	29072	MSKCC	GRCh37	3	47125583	47125583	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750289124		P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	23	361	0	ENST00000409792.3:c.5687C>T	p.Ala1896Val	p.A1896V	ENST00000409792	NM_014159.6	1896	gCa/gTa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146698	185146698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	217	542	1	ENST00000265026.3:c.329C>T	p.Thr110Ile	p.T110I	ENST00000265026	NM_004721.4	110	aCa/aTa																																																																															
KIT	3815	MSKCC	GRCh37	4	55595596	55595596	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781588289		P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	75	222	0	ENST00000288135.5:c.2086G>A	p.Asp696Asn	p.D696N	ENST00000288135	NM_000222.2	696	Gat/Aat																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149514319	149514319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	94	380	0	ENST00000261799.4:c.625C>T	p.Leu209Phe	p.L209F	ENST00000261799	NM_002609.3	209	Ctc/Ttc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519393	176519393	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201913502		P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	144	708	1	ENST00000292408.4:c.799G>A	p.Val267Met	p.V267M	ENST00000292408	NM_213647.1	267	Gtg/Atg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931612	39931612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	133	446	1	ENST00000378444.4:c.2987G>A	p.Arg996Gln	p.R996Q	ENST00000378444	NM_001123385.1	996	cGg/cAg																																																																															
XIAP	331	MSKCC	GRCh37	X	123034427	123034427	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	71	310	0	ENST00000355640.3:c.1189del	p.Ile397PhefsTer18	p.I397Ffs*18	ENST00000355640		395	gAa/ga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487277	56487277	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1035001455		P-0056212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	58	486	0	ENST00000267101.3:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000267101	NM_001982.3	475	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577147	7577147	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0056212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	163	425	0	ENST00000269305.4:c.791del	p.Leu264HisfsTer81	p.L264Hfs*81	ENST00000269305	NM_001126112.2	264	cTa/ca																																																																															
APC	324	MSKCC	GRCh37	5	112175039	112175040	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0056212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	39	166	0	ENST00000257430.4:c.3749_3750del	p.Lys1250SerfsTer5	p.K1250Sfs*5	ENST00000257430	NM_000038.5	1250	AAa/a																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912189	114912189	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867720073		P-0056212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	85	513	0	ENST00000543371.1:c.1259G>A	p.Arg420Gln	p.R420Q	ENST00000543371	NM_001198531.1	420	cGg/cAg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28897021	28897021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	91	414	0	ENST00000282397.4:c.2859G>T	p.Lys953Asn	p.K953N	ENST00000282397	NM_002019.4	953	aaG/aaT																																																																															
CIC	23152	MSKCC	GRCh37	19	42791543	42791544	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0056212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	178	674	1	ENST00000575354.2:c.525dup	p.Ala176CysfsTer11	p.A176Cfs*11	ENST00000575354	NM_015125.3	175	agt/agTt																																																																															
ALK	238	MSKCC	GRCh37	2	29416200	29416200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	129	507	1	ENST00000389048.3:c.4753G>T	p.Gly1585Cys	p.G1585C	ENST00000389048	NM_004304.4	1585	Ggc/Tgc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248394	212248394	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	36	264	1	ENST00000342788.4:c.3873G>T	p.Lys1291Asn	p.K1291N	ENST00000342788	NM_005235.2	1291	aaG/aaT																																																																															
APC	324	MSKCC	GRCh37	5	112175375	112175475	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTATGTTCAGGAGACCCCACTCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAG	TCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTATGTTCAGGAGACCCCACTCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAG	-			P-0056212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	32	201	0	ENST00000257430.4:c.4085_4185del	p.Ser1362PhefsTer2	p.S1362Ffs*2	ENST00000257430	NM_000038.5	1362	TCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTATGTTCAGGAGACCCCACTCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGt/t																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0056216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	629	712	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	188	277	0	ENST00000349496.5:c.1982G>A	p.Arg661Gln	p.R661Q	ENST00000349496	NM_001904.3	661	cGa/cAa																																																																															
ARAF	369	MSKCC	GRCh37	X	47430770	47430770	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	404	360	3	ENST00000377045.4:c.1735C>T	p.Arg579Trp	p.R579W	ENST00000377045	NM_001654.4	579	Cgg/Tgg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110034	115110050	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGCGGCCGCCGCTGC	GAGGCGGCCGCCGCTGC	-			P-0056216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	158	689	0	ENST00000257566.3:c.1828_1844del	p.Ala610LeufsTer76	p.A610Lfs*76	ENST00000257566	NM_016569.3	610	GCAGCGGCGGCCGCCTCc/c																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265754	41266209	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGG	ATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGG	-			P-0056216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	63	59	0	ENST00000349496.5:c.13+184_208del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
PLK2	10769	MSKCC	GRCh37	5	57752413	57752413	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	20	159	0	ENST00000274289.3:c.1160G>T	p.Arg387Ile	p.R387I	ENST00000274289	NM_006622.3	387	aGa/aTa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	28	358	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7990621	7990621	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	11	371	0	ENST00000319144.4:c.140C>G	p.Thr47Ser	p.T47S	ENST00000319144	NM_001139.2	47	aCt/aGt																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7990662	7990662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0056220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	10	500	1	ENST00000319144.4:c.99C>A	p.Ser33Arg	p.S33R	ENST00000319144	NM_001139.2	33	agC/agA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0056223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	128	301	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0056223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	57	345	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0056223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	47	159	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0056223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	136	255	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0056223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	67	295	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411783	63411783	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0056223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	334	763	1	ENST00000330258.3:c.1384G>T	p.Glu462Ter	p.E462*	ENST00000330258	NM_152424.3	462	Gaa/Taa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135779816	135779816	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768189353		P-0056223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	109	332	0	ENST00000298552.3:c.2023G>A	p.Asp675Asn	p.D675N	ENST00000298552	NM_001162426.1	675	Gac/Aac																																																																															
SDHA	6389	MSKCC	GRCh37	5	235377	235377	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748683825		P-0056223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	132	578	1	ENST00000264932.6:c.1183G>A	p.Val395Ile	p.V395I	ENST00000264932	NM_004168.2	395	Gtc/Atc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631935	90631935	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs267606870		P-0056223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	130	555	0	ENST00000330062.3:c.418C>G	p.Arg140Gly	p.R140G	ENST00000330062	NM_002168.2	140	Cgg/Ggg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584506	48584507	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0056223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	86	265	0	ENST00000342988.3:c.680dup	p.Ser227ArgfsTer8	p.S227Rfs*8	ENST00000342988	NM_005359.5	227	agt/aGgt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057616	180057616	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	196	772	0	ENST00000261937.6:c.339C>A	p.Tyr113Ter	p.Y113*	ENST00000261937	NM_182925.4	113	taC/taA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0056228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	58	277	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912660		P-0056228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	85	689	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																															
NF1	4763	MSKCC	GRCh37	17	29557277	29557277	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0056228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	24	201	0	ENST00000358273.4:c.2991-1G>C		p.X997_splice	ENST00000358273	NM_001042492.2	997																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3828166	3828166	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0056228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	48	325	0	ENST00000262367.5:c.1959A>T	p.Leu653Phe	p.L653F	ENST00000262367	NM_004380.2	653	ttA/ttT																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857079	9857079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	34	247	0	ENST00000330684.3:c.4322C>T	p.Thr1441Ile	p.T1441I	ENST00000330684	NM_001134407.1	1441	aCc/aTc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805923	89805923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	53	650	2	ENST00000389301.3:c.3973G>A	p.Asp1325Asn	p.D1325N	ENST00000389301	NM_000135.2	1325	Gat/Aat																																																																															
MYD88	4615	MSKCC	GRCh37	3	38180303	38180303	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0056228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	57	655	0	ENST00000396334.3:c.151A>C	p.Asn51His	p.N51H	ENST00000396334	NM_002468.4	51	Aac/Cac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0056234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	12	507	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0056234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	17	654	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0056234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	18	310	0	ENST00000263967.3:c.3132T>A	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaA																																																																															
MET	4233	MSKCC	GRCh37	7	116409781	116409781	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	84	254	0	ENST00000397752.3:c.2666C>G	p.Ser889Cys	p.S889C	ENST00000397752	NM_000245.2	889	tCt/tGt																																																																															
RHOA	387	MSKCC	GRCh37	3	49412905	49412905	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519951		P-0056235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	188	502	0	ENST00000418115.1:c.118G>C	p.Glu40Gln	p.E40Q	ENST00000418115	NM_001664.2	40	Gag/Cag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858600	57858600	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756282060		P-0056235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	205	603	0	ENST00000228682.2:c.338G>A	p.Arg113Gln	p.R113Q	ENST00000228682	NM_005269.2	113	cGa/cAa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016634	12016634	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	115	257	0	ENST00000353533.5:c.770C>G	p.Ser257Cys	p.S257C	ENST00000353533	NM_003010.3	257	tCt/tGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878235	151878235	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0056235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	150	534	0	ENST00000262189.6:c.6710C>G	p.Ser2237Ter	p.S2237*	ENST00000262189	NM_170606.2	2237	tCa/tGa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147564	47147564	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	100	267	0	ENST00000409792.3:c.4762G>C	p.Glu1588Gln	p.E1588Q	ENST00000409792	NM_014159.6	1588	Gag/Cag																																																																															
ABL1	25	MSKCC	GRCh37	9	133759881	133759881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1310633113		P-0056235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	196	733	1	ENST00000318560.5:c.2204C>T	p.Thr735Met	p.T735M	ENST00000318560	NM_005157.4	735	aCg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878973	151878973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	158	461	1	ENST00000262189.6:c.5972C>T	p.Ser1991Leu	p.S1991L	ENST00000262189	NM_170606.2	1991	tCa/tTa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258971	16258971	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	190	552	0	ENST00000375759.3:c.6236G>C	p.Arg2079Thr	p.R2079T	ENST00000375759	NM_015001.2	2079	aGa/aCa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259654	16259654	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0056235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	148	388	0	ENST00000375759.3:c.6919G>T	p.Glu2307Ter	p.E2307*	ENST00000375759	NM_015001.2	2307	Gaa/Taa																																																																															
MDM4	4194	MSKCC	GRCh37	1	204513756	204513756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	144	234	0	ENST00000367182.3:c.766G>A	p.Glu256Lys	p.E256K	ENST00000367182	NM_001278516.1	256	Gaa/Aaa																																																																															
PGR	5241	MSKCC	GRCh37	11	100999468	100999468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	274	798	0	ENST00000325455.5:c.334G>A	p.Asp112Asn	p.D112N	ENST00000325455	NM_001202474.3	112	Gac/Aac																																																																															
FLT1	2321	MSKCC	GRCh37	13	28897053	28897053	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	135	355	0	ENST00000282397.4:c.2827G>C	p.Glu943Gln	p.E943Q	ENST00000282397	NM_002019.4	943	Gaa/Caa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43700267	43700267	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0056235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	188	524	0	ENST00000382044.4:c.5620T>C	p.Phe1874Leu	p.F1874L	ENST00000382044	NM_001141980.1	1874	Ttc/Ctc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016554	12016554	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0056235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	101	190	0	ENST00000353533.5:c.690C>G	p.Ile230Met	p.I230M	ENST00000353533	NM_003010.3	230	atC/atG																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592039	67592039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	99	209	0	ENST00000274335.5:c.1855C>T	p.His619Tyr	p.H619Y	ENST00000274335		619	Cat/Tat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845835	151845835	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs536013179		P-0056235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	400	566	0	ENST00000262189.6:c.13177G>A	p.Asp4393Asn	p.D4393N	ENST00000262189	NM_170606.2	4393	Gat/Aat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151846238	151846238	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0056235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	239	307	0	ENST00000262189.6:c.12775-1G>A		p.X4259_splice	ENST00000262189	NM_170606.2	4259																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151878094	151878094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	126	402	0	ENST00000262189.6:c.6851C>T	p.Ser2284Leu	p.S2284L	ENST00000262189	NM_170606.2	2284	tCa/tTa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115931	8115931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	80	539	0	ENST00000346208.3:c.1277C>T	p.Ser426Phe	p.S426F	ENST00000346208		426	tCc/tTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0055657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	57	525	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
TERT	7015	MSKCC	GRCh37	5	1254510	1254510	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121918664		P-0055657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	107	1054	0	ENST00000310581.5:c.3268G>A	p.Val1090Met	p.V1090M	ENST00000310581	NM_198253.2	1090	Gtg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831491	72831491	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs369392504		P-0055657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	95	687	0	ENST00000268489.5:c.5090T>C	p.Ile1697Thr	p.I1697T	ENST00000268489	NM_006885.3	1697	aTt/aCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0055657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	54	637	0	ENST00000269305.4:c.993+2T>C		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
JAK3	3718	MSKCC	GRCh37	19	17948006	17948006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	86	829	0	ENST00000458235.1:c.1718C>T	p.Ala573Val	p.A573V	ENST00000458235	NM_000215.3	573	gCg/gTg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324660	31324660	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	52	222	0	ENST00000412585.2:c.148G>T	p.Gly50Cys	p.G50C	ENST00000412585	NM_005514.6	50	Ggc/Tgc																																																																															
POLE	5426	MSKCC	GRCh37	12	133263894	133263894	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	18	330	0	ENST00000320574.5:c.8T>C	p.Leu3Pro	p.L3P	ENST00000320574	NM_006231.2	3	cTg/cCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831579	72831579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	67	645	1	ENST00000268489.5:c.5002C>T	p.Pro1668Ser	p.P1668S	ENST00000268489	NM_006885.3	1668	Cca/Tca																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62298901	62298901	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	72	617	0	ENST00000508582.2:c.766G>T	p.Ala256Ser	p.A256S	ENST00000508582		256	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579330	7579330	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055667-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	219	910	1	ENST00000269305.4:c.357del	p.Lys120SerfsTer3	p.K120Sfs*3	ENST00000269305	NM_001126112.2	119	gcC/gc																																																																															
BCL6	604	MSKCC	GRCh37	3	187444650	187444650	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1246753673		P-0055667-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	157	683	1	ENST00000232014.4:c.1577G>A	p.Arg526His	p.R526H	ENST00000232014	NM_001130845.1	526	cGc/cAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628542	187628542	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1157383372		P-0055667-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			498	218	845	0	ENST00000441802.2:c.2440G>A	p.Asp814Asn	p.D814N	ENST00000441802	NM_005245.3	814	Gat/Aat																																																																															
TET2	54790	MSKCC	GRCh37	4	106155400	106155400	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs781201899		P-0055927-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			446	48	351	0	ENST00000380013.4:c.301C>A	p.Pro101Thr	p.P101T	ENST00000380013	NM_001127208.2	101	Cct/Act																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347819	347819	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746435850		P-0055927-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			835	122	1078	0	ENST00000262320.3:c.1687G>A	p.Ala563Thr	p.A563T	ENST00000262320	NM_003502.3	563	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055927-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			627	275	927	0	ENST00000269305.4:c.469G>C	p.Val157Leu	p.V157L	ENST00000269305	NM_001126112.2	157	Gtc/Ctc																																																																															
CBL	867	MSKCC	GRCh37	11	119149234	119149234	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055927-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			481	175	534	0	ENST00000264033.4:c.1242G>T	p.Gln414His	p.Q414H	ENST00000264033	NM_005188.3	414	caG/caT																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94219151	94219151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055927-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			583	40	417	0	ENST00000323929.3:c.253G>A	p.Gly85Ser	p.G85S	ENST00000323929	NM_005591.3	85	Ggt/Agt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56402442	56402442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055927-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			256	44	236	0	ENST00000348428.3:c.1484G>T	p.Gly495Val	p.G495V	ENST00000348428	NM_006785.3	495	gGa/gTa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123672	11123672	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055927-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			454	161	688	0	ENST00000344626.4:c.2322C>A	p.Asn774Lys	p.N774K	ENST00000344626	NM_003072.3	774	aaC/aaA																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872615	136872615	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0055927-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			480	59	421	0	ENST00000241393.3:c.883T>A	p.Cys295Ser	p.C295S	ENST00000241393	NM_003467.2	295	Tgt/Agt																																																																															
KDR	3791	MSKCC	GRCh37	4	55961123	55961123	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0055927-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			430	212	558	0	ENST00000263923.4:c.2818-1G>T		p.X940_splice	ENST00000263923	NM_002253.2	940																																																																																
FAT1	2195	MSKCC	GRCh37	4	187539452	187539452	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055927-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	55	411	0	ENST00000441802.2:c.8288A>G	p.Glu2763Gly	p.E2763G	ENST00000441802	NM_005245.3	2763	gAg/gGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0055976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	49	374	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0055976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	142	717	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs371769427		P-0055976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	11	244	0	ENST00000291552.4:c.101C>A	p.Ser34Tyr	p.S34Y	ENST00000291552	NM_006758.2	34	tCt/tAt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15943758	15943758	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	23	291	0	ENST00000268712.3:c.6730T>G	p.Ser2244Ala	p.S2244A	ENST00000268712	NM_006311.3	2244	Tca/Gca																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188183	11188183	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1057524049		P-0055996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	170	555	0	ENST00000361445.4:c.5911G>A	p.Ala1971Thr	p.A1971T	ENST00000361445	NM_004958.3	1971	Gcc/Acc																																																																															
RET	5979	MSKCC	GRCh37	10	43600567	43600567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	235	1109	1	ENST00000355710.3:c.793G>A	p.Glu265Lys	p.E265K	ENST00000355710	NM_020975.4	265	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0055996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	287	431	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877474	28877474	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	120	555	0	ENST00000282397.4:c.3847G>T	p.Gly1283Trp	p.G1283W	ENST00000282397	NM_002019.4	1283	Ggg/Tgg																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872961	35872961	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs758681852		P-0055996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	85	638	0	ENST00000216797.5:c.271A>C	p.Met91Leu	p.M91L	ENST00000216797	NM_020529.2	91	Atg/Ctg																																																																															
B2M	567	MSKCC	GRCh37	15	45003763	45003763	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0055996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	381	695	0	ENST00000558401.1:c.20del	p.Leu7Ter	p.L7*	ENST00000558401	NM_004048.2	7	Tta/ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7574026	7574026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	433	837	2	ENST00000269305.4:c.1001G>T	p.Gly334Val	p.G334V	ENST00000269305	NM_001126112.2	334	gGg/gTg																																																																															
CALR	811	MSKCC	GRCh37	19	13051225	13051225	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1490417226		P-0055996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	140	781	0	ENST00000316448.5:c.661G>A	p.Glu221Lys	p.E221K	ENST00000316448	NM_004343.3	221	Gag/Aag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210890	36210890	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767027293		P-0055996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	430	1389	0	ENST00000222270.7:c.641C>T	p.Ser214Phe	p.S214F	ENST00000222270	NM_014727.1	214	tCc/tTc																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47612318	47612318	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	100	449	0	ENST00000263735.4:c.872A>C	p.Lys291Thr	p.K291T	ENST00000263735	NM_002354.2	291	aAg/aCg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251780	212251781	+	missense_variant	Missense_Mutation	DNP	CA	CA	AC			P-0055996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	89	445	1	ENST00000342788.4:c.3278_3279delinsGT	p.Val1093Gly	p.V1093G	ENST00000342788	NM_005235.2	1093	gTG/gGT																																																																															
INHA	3623	MSKCC	GRCh37	2	220439821	220439821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	218	1268	0	ENST00000243786.2:c.674G>A	p.Ser225Asn	p.S225N	ENST00000243786	NM_002191.3	225	aGt/aAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1293719	1293719	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1400139919		P-0055996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1445	476	1435	1	ENST00000310581.5:c.1282C>T	p.Arg428Trp	p.R428W	ENST00000310581	NM_198253.2	428	Cgg/Tgg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0055996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	226	545	0				ENST00000310581	NM_198253.2																																																																																	
NSD1	64324	MSKCC	GRCh37	5	176722122	176722122	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0055996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	272	767	0	ENST00000439151.2:c.7753G>T	p.Gly2585Ter	p.G2585*	ENST00000439151	NM_022455.4	2585	Gga/Tga																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031962	26031962	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	197	569	0	ENST00000244661.2:c.327C>G	p.Asn109Lys	p.N109K	ENST00000244661	NM_003537.3	109	aaC/aaG																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163720	32163720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	83	1001	0	ENST00000375023.3:c.5506G>C	p.Glu1836Gln	p.E1836Q	ENST00000375023	NM_004557.3	1836	Gag/Cag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609967	117609967	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0055996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	161	314	0	ENST00000368508.3:c.6734-2A>G		p.X2245_splice	ENST00000368508	NM_002944.2	2245																																																																																
HGF	3082	MSKCC	GRCh37	7	81350067	81350067	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0055996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	176	343	0	ENST00000222390.5:c.1265T>A	p.Leu422Ter	p.L422*	ENST00000222390	NM_000601.4	422	tTa/tAa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411421	63411421	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	69	1114	0	ENST00000330258.3:c.1746G>T	p.Glu582Asp	p.E582D	ENST00000330258	NM_152424.3	582	gaG/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577514	7577515	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0055999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	243	683	0	ENST00000269305.4:c.766dup	p.Thr256AsnfsTer8	p.T256Nfs*8	ENST00000269305	NM_001126112.2	256	aca/aAca																																																																															
BRCA1	672	MSKCC	GRCh37	17	41197776	41197776	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs80356914		P-0055999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	349	739	0	ENST00000357654.3:c.5511G>T	p.Trp1837Cys	p.W1837C	ENST00000357654	NM_007294.3	1837	tgG/tgT																																																																															
TSC1	7248	MSKCC	GRCh37	9	135787716	135787716	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0055999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	102	438	1	ENST00000298552.3:c.866C>A	p.Ser289Ter	p.S289*	ENST00000298552	NM_001162426.1	289	tCa/tAa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411048	63411048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	103	700	0	ENST00000330258.3:c.2119G>A	p.Gly707Arg	p.G707R	ENST00000330258	NM_152424.3	707	Gga/Aga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0056003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	71	444	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0056003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	110	785	1	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
RTEL1	51750	MSKCC	GRCh37	20	62325761	62325761	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750539539		P-0056003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	77	936	0	ENST00000508582.2:c.3101C>T	p.Thr1034Met	p.T1034M	ENST00000508582		1034	aCg/aTg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500554	149500554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0056003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	80	900	3	ENST00000261799.4:c.2483C>T	p.Ala828Val	p.A828V	ENST00000261799	NM_002609.3	828	gCg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106375	27106375	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0056003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	75	669	1	ENST00000324856.7:c.5987del	p.Gly1996AlafsTer19	p.G1996Afs*19	ENST00000324856	NM_006015.4	1996	Ggc/gc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911713	32911713	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0056003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	16	526	0	ENST00000380152.3:c.3221G>C	p.Ser1074Thr	p.S1074T	ENST00000380152		1074	aGt/aCt																																																																															
RB1	5925	MSKCC	GRCh37	13	48881459	48881459	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0056003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	69	248	0	ENST00000267163.4:c.181del	p.Cys61ValfsTer4	p.C61Vfs*4	ENST00000267163	NM_000321.2	61	Tgt/gt																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0056012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	118	406	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0056013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1215	176	656	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148508727	148508727	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs267601394		P-0056013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	13	303	0	ENST00000320356.2:c.1937A>T	p.Tyr646Phe	p.Y646F	ENST00000320356	NM_004456.4	646	tAc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057520000		P-0055814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	754	935	0	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10274009	10274009	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148831705		P-0055814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	116	578	0	ENST00000340748.4:c.871A>G	p.Lys291Glu	p.K291E	ENST00000340748		291	Aaa/Gaa																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793407	242793407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	78	919	1	ENST00000334409.5:c.670G>A	p.Gly224Arg	p.G224R	ENST00000334409	NM_005018.2	224	Ggg/Agg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0040730-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	121	305	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0040730-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			79	758	779	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724437	112724450	+	frameshift_variant	Frame_Shift_Del	DEL	ATCCAAGAGATCTA	ATCCAAGAGATCTA	-			P-0040730-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			248	154	449	0	ENST00000369452.4:c.321_334del	p.Leu107PhefsTer22	p.L107Ffs*22	ENST00000369452	NM_007373.3	107	ttATCCAAGAGATCTAta/ttta																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458335	12458335	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs72551362		P-0040730-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			44	501	576	2	ENST00000287820.6:c.952G>A	p.Val318Met	p.V318M	ENST00000287820	NM_015869.4	318	Gtg/Atg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467421	66467421	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040730-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			123	127	198	0	ENST00000273854.3:c.848T>G	p.Leu283Arg	p.L283R	ENST00000273854	NM_004439.5	283	cTg/cGg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910375	29910401	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GGCCCTGGCCCTGACCCAGACCTGGGC	GGCCCTGGCCCTGACCCAGACCTGGGC	-			P-0040730-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	921	1228	0	ENST00000376809.5:c.47_73del	p.Ala16_Ala24del	p.A16_A24del	ENST00000376809	NM_002116.7	15	ggGGCCCTGGCCCTGACCCAGACCTGGGCg/ggg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117866647	117866647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040730-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			932	274	393	0	ENST00000297338.2:c.998A>T	p.Asp333Val	p.D333V	ENST00000297338	NM_006265.2	333	gAt/gTt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942146	17942146	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040730-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1274	69	893	0	ENST00000458235.1:c.2869G>C	p.Val957Leu	p.V957L	ENST00000458235	NM_000215.3	957	Gtg/Ctg																																																																															
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs137854575		P-0055858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	45	201	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0055858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	401	567	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0055858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	35	146	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107023	27107024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0055858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	126	358	0	ENST00000324856.7:c.6635dup	p.Ala2213GlyfsTer12	p.A2213Gfs*12	ENST00000324856	NM_006015.4	2212	cag/cAag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925629	114925630	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0055858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	217	716	0	ENST00000543371.1:c.1708_1709del	p.Ser570IlefsTer38	p.S570Ifs*38	ENST00000543371	NM_001198531.1	569	tcCTca/tcca																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519968		P-0055904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	79	379	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																															
APC	324	MSKCC	GRCh37	5	112177374	112177374	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	32	209	0	ENST00000257430.4:c.6083G>C	p.Ser2028Thr	p.S2028T	ENST00000257430	NM_000038.5	2028	aGt/aCt																																																																															
STK19	8859	MSKCC	GRCh37	6	31940099	31940099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	171	854	1	ENST00000375331.2:c.241G>A	p.Val81Ile	p.V81I	ENST00000375331	NM_004197.1	81	Gta/Ata																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0055911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	320	537	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0055911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	131	509	2	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0055911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	114	144	0	ENST00000257430.4:c.4063dup	p.Ser1355PhefsTer20	p.S1355Ffs*20	ENST00000257430	NM_000038.5	1353	-/T																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288474	21288474	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	131	487	0	ENST00000354336.3:c.719C>G	p.Ala240Gly	p.A240G	ENST00000354336	NM_005207.3	240	gCg/gGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0055822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	103	499	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	219	933	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87325683	87325683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	48	533	0	ENST00000277120.3:c.560C>T	p.Ala187Val	p.A187V	ENST00000277120		187	gCa/gTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023069	27023069	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0055822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	26	64	0	ENST00000324856.7:c.175G>T	p.Glu59Ter	p.E59*	ENST00000324856	NM_006015.4	59	Gag/Tag																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36941242	36941242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	31	1016	0	ENST00000361632.4:c.97G>A	p.Ala33Thr	p.A33T	ENST00000361632		33	Gcc/Acc																																																																															
MSI1	4440	MSKCC	GRCh37	12	120784078	120784078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	31	1223	1	ENST00000257552.2:c.907C>T	p.Arg303Cys	p.R303C	ENST00000257552	NM_002442.3	303	Cgc/Tgc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11193198	11193198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	30	848	0	ENST00000361445.4:c.5303C>T	p.Thr1768Ile	p.T1768I	ENST00000361445	NM_004958.3	1768	aCa/aTa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690826	89690826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	48	381	0	ENST00000371953.3:c.233C>T	p.Thr78Ile	p.T78I	ENST00000371953	NM_000314.4	78	aCc/aTc																																																																															
PGR	5241	MSKCC	GRCh37	11	100909952	100909953	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0055822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	36	508	0	ENST00000325455.5:c.2696_2697delinsTT	p.Arg899Leu	p.R899L	ENST00000325455	NM_001202474.3	899	cGG/cTT																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858546	57858546	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0055822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	27	898	0	ENST00000228682.2:c.284T>A	p.Leu95Gln	p.L95Q	ENST00000228682	NM_005269.2	95	cTg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222872	36222872	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	42	1110	2	ENST00000222270.7:c.5501G>T	p.Arg1834Leu	p.R1834L	ENST00000222270	NM_014727.1	1834	cGc/cTc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546599	9546599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	25	723	0	ENST00000353224.5:c.1423G>T	p.Val475Phe	p.V475F	ENST00000353224	NM_177990.2	475	Gtt/Ttt																																																																															
BTK	695	MSKCC	GRCh37	X	100617667	100617667	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0055822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	34	616	0	ENST00000308731.7:c.402C>A	p.Tyr134Ter	p.Y134*	ENST00000308731	NM_000061.2	134	taC/taA																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228217	53228217	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AA			P-0055822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	31	867	0	ENST00000375401.3:c.2185delinsTT	p.Val729PhefsTer8	p.V729Ffs*8	ENST00000375401	NM_004187.3	729	Gtc/TTtc																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0055974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	893	431	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577523	7577523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	673	850	0	ENST00000269305.4:c.758C>T	p.Thr253Ile	p.T253I	ENST00000269305	NM_001126112.2	253	aCc/aTc																																																																															
CIC	23152	MSKCC	GRCh37	19	42791286	42791286	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs61741480		P-0055974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	756	1130	0	ENST00000575354.2:c.346G>T	p.Val116Leu	p.V116L	ENST00000575354	NM_015125.3	116	Gtg/Ttg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998382	100998382	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	123	182	0	ENST00000325455.5:c.1420C>A	p.Pro474Thr	p.P474T	ENST00000325455	NM_001202474.3	474	Ccg/Acg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4101064	4101064	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	312	510	0	ENST00000262948.5:c.658A>G	p.Ile220Val	p.I220V	ENST00000262948	NM_030662.3	220	Atc/Gtc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132565	11132568	+	frameshift_variant	Frame_Shift_Del	DEL	CCTG	CCTG	-			P-0055974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	709	1037	0	ENST00000344626.4:c.2782_2785del	p.Leu928CysfsTer21	p.L928Cfs*21	ENST00000344626	NM_003072.3	927	ttCCTG/tt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259388	89259388	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0055974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	141	502	0	ENST00000336596.2:c.532G>T	p.Gly178Ter	p.G178*	ENST00000336596	NM_005233.5	178	Gga/Tga																																																																															
ATR	545	MSKCC	GRCh37	3	142231111	142231111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	234	449	0	ENST00000350721.4:c.4843G>A	p.Asp1615Asn	p.D1615N	ENST00000350721	NM_001184.3	1615	Gac/Aac																																																																															
PARK2	5071	MSKCC	GRCh37	6	161990442	161990442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	110	467	0	ENST00000366898.1:c.878G>T	p.Cys293Phe	p.C293F	ENST00000366898	NM_004562.2	293	tGt/tTt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450319	50450320	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0055974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	199	742	1	ENST00000331340.3:c.503_504delinsAA	p.Ser168Ter	p.S168*	ENST00000331340	NM_006060.4	168	tCC/tAA																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8375964	8375964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	117	394	0	ENST00000356435.5:c.4633G>T	p.Asp1545Tyr	p.D1545Y	ENST00000356435		1545	Gat/Tat																																																																															
PAX5	5079	MSKCC	GRCh37	9	37002710	37002710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	542	875	0	ENST00000358127.4:c.539C>A	p.Ser180Tyr	p.S180Y	ENST00000358127	NM_001280556.1	180	tCc/tAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039668	47039668	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	257	1053	0	ENST00000329236.7:c.886G>C	p.Gly296Arg	p.G296R	ENST00000329236	NM_001204466.1	296	Ggc/Cgc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412245	63412245	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	255	1239	0	ENST00000330258.3:c.922C>G	p.Pro308Ala	p.P308A	ENST00000330258	NM_152424.3	308	Cca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7579386	7579386	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0027041-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			120	412	680	0	ENST00000269305.4:c.301A>T	p.Lys101Ter	p.K101*	ENST00000269305	NM_001126112.2	101	Aaa/Taa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420291	88420291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027041-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	135	415	0	ENST00000360948.2:c.2395G>T	p.Val799Leu	p.V799L	ENST00000360948	NM_001012338.2	799	Gtg/Ttg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36938193	36938193	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027041-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			112	705	744	0	ENST00000361632.4:c.768G>C	p.Trp256Cys	p.W256C	ENST00000361632		256	tgG/tgC																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068881	30068881	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027041-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			433	103	481	0	ENST00000331968.5:c.2048C>G	p.Thr683Arg	p.T683R	ENST00000331968	NM_002742.2	683	aCg/aGg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786036	3786036	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0027041-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			274	285	606	0	ENST00000262367.5:c.4728+1G>A		p.X1576_splice	ENST00000262367	NM_004380.2	1576																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10610129	10610129	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027041-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			133	378	618	0	ENST00000171111.5:c.581T>G	p.Ile194Ser	p.I194S	ENST00000171111	NM_203500.1	194	aTt/aGt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223799	36223799	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027041-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			386	447	916	1	ENST00000222270.7:c.6349G>T	p.Val2117Leu	p.V2117L	ENST00000222270	NM_014727.1	2117	Gtg/Ttg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343214	118343214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027041-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			286	47	262	0	ENST00000534358.1:c.1340C>T	p.Pro447Leu	p.P447L	ENST00000534358	NM_005933.3	447	cCg/cTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291878	15291878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027041-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			357	216	847	1	ENST00000263388.2:c.2888C>T	p.Ala963Val	p.A963V	ENST00000263388	NM_000435.2	963	gCa/gTa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910590	50910590	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027041-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			894	189	739	1	ENST00000440232.2:c.1693C>A	p.His565Asn	p.H565N	ENST00000440232	NM_002691.3	565	Cac/Aac																																																																															
ATRX	546	MSKCC	GRCh37	X	76952167	76952167	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027041-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			194	196	351	0	ENST00000373344.5:c.268G>C	p.Val90Leu	p.V90L	ENST00000373344	NM_000489.3	90	Gta/Cta																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0055838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	122	505	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0055838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	44	286	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0055838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	85	383	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047965	180047965	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1370847176		P-0055838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1370	183	1008	1	ENST00000261937.6:c.2210G>A	p.Arg737His	p.R737H	ENST00000261937	NM_182925.4	737	cGc/cAc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175956203	175956203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	143	402	0	ENST00000367669.3:c.2009G>T	p.Gly670Val	p.G670V	ENST00000367669	NM_022457.5	670	gGa/gTa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2135008	2135008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1096	163	890	0	ENST00000219476.3:c.4550C>T	p.Pro1517Leu	p.P1517L	ENST00000219476	NM_000548.3	1517	cCa/cTa																																																																															
KDR	3791	MSKCC	GRCh37	4	55955959	55955959	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	70	500	0	ENST00000263923.4:c.3203C>A	p.Pro1068His	p.P1068H	ENST00000263923	NM_002253.2	1068	cCt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112162905	112162905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	89	449	0	ENST00000257430.4:c.1509G>A	p.Met503Ile	p.M503I	ENST00000257430	NM_000038.5	503	atG/atA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0055839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	86	355	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0055839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	395	659	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161293	55161293	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0055839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	105	436	0	ENST00000257290.5:c.3124T>A	p.Ser1042Thr	p.S1042T	ENST00000257290	NM_006206.4	1042	Tcg/Acg																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0055839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	67	338	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175642	112175642	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	125	328	0	ENST00000257430.4:c.4351del	p.Glu1451LysfsTer22	p.E1451Kfs*22	ENST00000257430	NM_000038.5	1451	Gaa/aa																																																																															
STK19	8859	MSKCC	GRCh37	6	31939922	31939922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	137	522	1	ENST00000375331.2:c.149C>A	p.Pro50His	p.P50H	ENST00000375331	NM_004197.1	50	cCc/cAc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0052299-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			249	1300	524	6	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041150	29041150	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052299-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			473	167	624	0	ENST00000282397.4:c.278C>A	p.Thr93Asn	p.T93N	ENST00000282397	NM_002019.4	93	aCc/aAc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89883001	89883001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052299-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			311	148	323	0	ENST00000389301.3:c.23A>G	p.Asn8Ser	p.N8S	ENST00000389301	NM_000135.2	8	aAc/aGc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59924461	59924461	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs587780833		P-0052299-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			78	269	271	3	ENST00000259008.2:c.627+1G>A		p.X209_splice	ENST00000259008	NM_032043.2	209																																																																																
PPARG	5468	MSKCC	GRCh37	3	12475492	12475517	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTCACAGCTGTTTGCCAAGCTGCT	TCCTCACAGCTGTTTGCCAAGCTGCT	-			P-0052299-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			920	293	621	0	ENST00000287820.6:c.1366_1391del	p.Ser456ProfsTer67	p.S456Pfs*67	ENST00000287820	NM_015869.4	456	TCCTCACAGCTGTTTGCCAAGCTGCTc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0055500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	271	584	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913558	32913559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1265028174		P-0055500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	74	408	1	ENST00000380152.3:c.5073dup	p.Trp1692MetfsTer3	p.W1692Mfs*3	ENST00000380152		1689	gca/gcAa																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910570	29910570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199474358		P-0055500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1207	221	805	0	ENST00000376809.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000376809	NM_002116.7	37	tCc/tTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106456	27106456	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	189	569	0	ENST00000324856.7:c.6067G>C	p.Glu2023Gln	p.E2023Q	ENST00000324856	NM_006015.4	2023	Gaa/Caa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220701	1220701	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730881976		P-0055500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	144	814	0	ENST00000326873.7:c.719C>G	p.Ser240Trp	p.S240W	ENST00000326873	NM_000455.4	240	tCg/tGg																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30134491	30134491	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	88	475	0	ENST00000263025.4:c.40C>A	p.Pro14Thr	p.P14T	ENST00000263025	NM_002746.2	14	Ccc/Acc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662315	117662315	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0055500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	49	541	0	ENST00000368508.3:c.5062del	p.Trp1688GlyfsTer42	p.W1688Gfs*42	ENST00000368508	NM_002944.2	1688	Tgg/gg																																																																															
BTK	695	MSKCC	GRCh37	X	100609618	100609618	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0055500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	58	428	1	ENST00000308731.7:c.1631G>A	p.Arg544Lys	p.R544K	ENST00000308731	NM_000061.2	544	aGg/aAg																																																																															
SESN3	143686	MSKCC	GRCh37	11	94926620	94926620	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0055610-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			273	119	380	0	ENST00000536441.1:c.144+1G>A		p.X48_splice	ENST00000536441	NM_144665.3	48																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0055610-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			232	87	365	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43784646	43784646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055610-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	119	377	0	ENST00000382044.4:c.28G>A	p.Gly10Arg	p.G10R	ENST00000382044	NM_001141980.1	10	Gga/Aga																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245798	41245816	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTCGTTTTGAAAGCAGA	CTTTCGTTTTGAAAGCAGA	-			P-0055610-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			287	116	571	0	ENST00000357654.3:c.1732_1750del	p.Ser578LeufsTer4	p.S578Lfs*4	ENST00000357654	NM_007294.3	578	TCTGCTTTCAAAACGAAAGct/ct																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055610-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			280	243	670	2	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602613	10602613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055610-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			242	272	873	0	ENST00000171111.5:c.965C>T	p.Pro322Leu	p.P322L	ENST00000171111	NM_203500.1	322	cCc/cTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11136125	11136125	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0055610-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			266	256	688	0	ENST00000344626.4:c.3109A>T	p.Asn1037Tyr	p.N1037Y	ENST00000344626	NM_003072.3	1037	Aac/Tac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288401	15288487	+	inframe_deletion	In_Frame_Del	DEL	GCAGGCGGGGTCGCAGCGGCTGTTGTTGAAGAGGCGCCAGCACTGCAGCGCCTCGCATTGCCGCCAGGGGTCGCCCACGCTCAGCGA	GCAGGCGGGGTCGCAGCGGCTGTTGTTGAAGAGGCGCCAGCACTGCAGCGCCTCGCATTGCCGCCAGGGGTCGCCCACGCTCAGCGA	-			P-0055610-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	199	677	0	ENST00000263388.2:c.4252_4338del	p.Leu1419_Ser1447del	p.L1419_S1447del	ENST00000263388	NM_000435.2	1418	TCGCTGAGCGTGGGCGACCCCTGGCGGCAATGCGAGGCGCTGCAGTGCTGGCGCCTCTTCAACAACAGCCGCTGCGACCCCGCCTGC/-																																																																															
EP300	2033	MSKCC	GRCh37	22	41525974	41525974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055610-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	72	355	0	ENST00000263253.7:c.1249C>T	p.Leu417Phe	p.L417F	ENST00000263253	NM_001429.3	417	Ctc/Ttc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5022211	5022211	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0055610-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			143	68	368	0	ENST00000381652.3:c.224G>A	p.Cys75Tyr	p.C75Y	ENST00000381652	NM_004972.3	75	tGt/tAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040773	47040773	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0055610-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			119	251	411	0	ENST00000329236.7:c.1174G>T	p.Gly392Ter	p.G392*	ENST00000329236	NM_001204466.1	392	Gga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0055811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	53	393	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307529	118307529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	36	416	1	ENST00000534358.1:c.302C>T	p.Ser101Leu	p.S101L	ENST00000534358	NM_005933.3	101	tCa/tTa																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233459	69233459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	50	452	0	ENST00000462284.1:c.1324G>A	p.Glu442Lys	p.E442K	ENST00000462284	NM_002392.5	442	Gaa/Aaa																																																																															
MAX	4149	MSKCC	GRCh37	14	65544735	65544735	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	48	545	0	ENST00000358664.4:c.191T>G	p.Leu64Arg	p.L64R	ENST00000358664	NM_002382.4	64	cTa/cGa																																																																															
CCNE1	898	MSKCC	GRCh37	19	30311688	30311688	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	60	514	0	ENST00000262643.3:c.542A>G	p.Glu181Gly	p.E181G	ENST00000262643	NM_001238.2	181	gAa/gGa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341107	8341107	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0055811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	45	423	0	ENST00000356435.5:c.5109T>A	p.Ser1703Arg	p.S1703R	ENST00000356435		1703	agT/agA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0055816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	81	395	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0055816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	154	763	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4095414	4095414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	161	805	0	ENST00000262948.5:c.1018C>T	p.Pro340Ser	p.P340S	ENST00000262948	NM_030662.3	340	Ccc/Tcc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753425	42753425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	49	929	2	ENST00000222329.4:c.839C>T	p.Ser280Leu	p.S280L	ENST00000222329	NM_006494.2	280	tCg/tTg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52725424	52725424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	142	685	0	ENST00000322088.6:c.1591G>A	p.Asp531Asn	p.D531N	ENST00000322088	NM_014225.5	531	Gac/Aac																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52725471	52725471	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	108	632	1	ENST00000322088.6:c.1638G>T	p.Lys546Asn	p.K546N	ENST00000322088	NM_014225.5	546	aaG/aaT																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52725487	52725487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	93	553	0	ENST00000322088.6:c.1654G>A	p.Asp552Asn	p.D552N	ENST00000322088	NM_014225.5	552	Gac/Aac																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907051	101907051	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	17	275	0	ENST00000374994.4:c.1011G>T	p.Lys337Asn	p.K337N	ENST00000374994	NM_004612.2	337	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0055817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	252	673	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931588		P-0055817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	145	429	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242486	+	inframe_deletion	In_Frame_Del	DEL	TTAAGAGAAGCAACATCT	TTAAGAGAAGCAACATCT	-	rs121913440		P-0055817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	85	470	0	ENST00000275493.2:c.2239_2256del	p.Leu747_Ser752del	p.L747_S752del	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAACATCT/-																																																																															
XPO1	7514	MSKCC	GRCh37	2	61711242	61711242	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0055817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	91	420	0	ENST00000401558.2:c.2509-2A>T		p.X837_splice	ENST00000401558	NM_003400.3	837																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	19	838	0	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0055876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	17	589	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913240		P-0055878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	191	407	1	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	325	737	3	ENST00000171111.5:c.959G>A	p.Arg320Gln	p.R320Q	ENST00000171111	NM_203500.1	320	cGg/cAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221293	1221293	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0055878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	298	709	0	ENST00000326873.7:c.816C>A	p.Tyr272Ter	p.Y272*	ENST00000326873	NM_000455.4	272	taC/taA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023228	27023261	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCTGAACAATAACCTCACGGAGCCGCCCGGCG	GCCCTGAACAATAACCTCACGGAGCCGCCCGGCG	-			P-0055878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	58	189	0	ENST00000324856.7:c.336_369del	p.Leu113AlafsTer108	p.L113Afs*108	ENST00000324856	NM_006015.4	112	GCCCTGAACAATAACCTCACGGAGCCGCCCGGCGgc/gc																																																																															
POLE	5426	MSKCC	GRCh37	12	133225915	133225915	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	252	681	0	ENST00000320574.5:c.3982G>T	p.Asp1328Tyr	p.D1328Y	ENST00000320574	NM_006231.2	1328	Gac/Tac																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29196018	29196018	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0055878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	446	653	0	ENST00000240100.2:c.580G>T	p.Gly194Trp	p.G194W	ENST00000240100	NM_001394.6	194	Ggg/Tgg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039327	47039345	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGGGCCCTGGCACCCTA	TGGGGGCCCTGGCACCCTA	-			P-0055878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	282	372	0	ENST00000329236.7:c.719_737del	p.Leu240ProfsTer12	p.L240Pfs*12	ENST00000329236	NM_001204466.1	240	cTGGGGGCCCTGGCACCCTAc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0055883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	49	303	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0055883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	74	430	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0055883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	80	322	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0055883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	104	625	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
GATA1	2623	MSKCC	GRCh37	X	48651631	48651631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	124	681	0	ENST00000376670.3:c.797C>T	p.Thr266Met	p.T266M	ENST00000376670	NM_002049.3	266	aCg/aTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857275	9857275	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1426934537		P-0055883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	80	572	0	ENST00000330684.3:c.4126C>T	p.Arg1376Cys	p.R1376C	ENST00000330684	NM_001134407.1	1376	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0055948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	26	436	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0055948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	79	899	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																																																															
CDK6	1021	MSKCC	GRCh37	7	92247483	92247483	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	15	333	0	ENST00000265734.4:c.737A>G	p.Asp246Gly	p.D246G	ENST00000265734	NM_001259.6	246	gAt/gGt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0055949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	59	255	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0055949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	127	266	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84391488	84391488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	78	149	0	ENST00000321945.7:c.344G>A	p.Arg115Lys	p.R115K	ENST00000321945	NM_139076.2	115	aGg/aAg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620610	52620610	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0055949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	76	270	0	ENST00000394830.3:c.3143T>A	p.Ile1048Asn	p.I1048N	ENST00000394830	NM_018313.4	1048	aTt/aAt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0055951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	170	490	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139397639	139397639	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	336	877	0	ENST00000277541.6:c.5162T>G	p.Val1721Gly	p.V1721G	ENST00000277541	NM_017617.3	1721	gTg/gGg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107014	27107014	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0055951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7	376	598	0	ENST00000324856.7:c.6625C>T	p.Gln2209Ter	p.Q2209*	ENST00000324856	NM_006015.4	2209	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151848086	151848086	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0055951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	116	284	0	ENST00000262189.6:c.12673C>T	p.Arg4225Ter	p.R4225*	ENST00000262189	NM_170606.2	4225	Cga/Tga																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390794	139390797	+	frameshift_variant	Frame_Shift_Del	DEL	GTGG	GTGG	-			P-0055951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	285	1048	0	ENST00000277541.6:c.7394_7397del	p.Pro2465ArgfsTer11	p.P2465Rfs*11	ENST00000277541	NM_017617.3	2465	cCCACg/cg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874986	151874988	+	frameshift_variant	Frame_Shift_Ins	INS	CTG	CTG	TGCAT			P-0055951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	78	231	0	ENST00000262189.6:c.7550_7552delinsATGCA	p.Ser2517TyrfsTer5	p.S2517Yfs*5	ENST00000262189	NM_170606.2	2517	tCAGta/tATGCAta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0032775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	100	508	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600446	10600446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	69	980	1	ENST00000171111.5:c.1409G>A	p.Arg470His	p.R470H	ENST00000171111	NM_203500.1	470	cGt/cAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970971	21970971	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0032775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	226	683	0	ENST00000304494.5:c.387C>G	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taC/taG																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575103	48575103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	109	465	0	ENST00000342988.3:c.297G>C	p.Trp99Cys	p.W99C	ENST00000342988	NM_005359.5	99	tgG/tgC																																																																															
RET	5979	MSKCC	GRCh37	10	43608369	43608369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	75	1259	0	ENST00000355710.3:c.1717G>C	p.Val573Leu	p.V573L	ENST00000355710	NM_020975.4	573	Gtg/Ctg																																																																															
PGR	5241	MSKCC	GRCh37	11	100912692	100912692	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	98	465	0	ENST00000325455.5:c.2630T>G	p.Leu877Arg	p.L877R	ENST00000325455	NM_001202474.3	877	cTt/cGt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89811440	89811440	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	69	1074	0	ENST00000389301.3:c.3553T>C	p.Trp1185Arg	p.W1185R	ENST00000389301	NM_000135.2	1185	Tgg/Cgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574025	7574028	+	frameshift_variant	Frame_Shift_Del	DEL	CCCA	CCCA	-			P-0032775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	49	766	0	ENST00000269305.4:c.999_1002del	p.Gly334ValfsTer10	p.G334Vfs*10	ENST00000269305	NM_001126112.2	333	cgTGGG/cg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0055567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	28	674	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424176	49424177	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0055567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	33	441	0	ENST00000301067.7:c.13885_13886insG	p.Thr4629SerfsTer18	p.T4629Sfs*18	ENST00000301067	NM_003482.3	4629	acc/aGcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0055843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	18	360	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0055843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	15	797	0	ENST00000269305.4:c.672G>C	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0055752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	143	1065	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0055752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	23	464	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15942968	15943753	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGAAAGAGAATCAAAAACATTTCCACTTATTTCTGAAAGGCCAATCAGGAAACAAACATGCATTGCCCCATCAGCCCACTGAATACACACAGCACTTGGCAAGTGACCTAGAACAATACCAGGACCCACCACACAGAGACCTTTTTTTTTGGAGACAGAGTCTCTCTCTGTCGCACCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCACTGCAACCTCCGCCTCCCAGATTCAAGGGATTCTCCTACCTCAGTCTCCCAAGTAGCTGGGACTACAGGCACCCACCACCACACCAGGCTAATTTTTTGTATTTTTAGGAGATGGGGTTTCACCATATTGGTCAGGCTGATCTCGAATTCCGAACCTCAGGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCAGCCCAGAGACCATCTTAATCCACAGATAACTCCTTAAGGAAATTTGTTTCCCAAGTGAATCAGTCACCCACACTTCTATTAAAGTTACTCAACAATTTTCTCAGTTCCCTAGTTTTGACAGTGTTCTTTAATAGTTTCATTCTTTTTGTTCATTTATCTTTTCAATAGGTATTTACTGGATCTCAGTTCCTTTCTGTGCTACTGGGTAAACCTTCCTTCACTAAATTATTTATTTATTTTTCCATATTAGAGCAGTCACTCCCCTGGTATACAGTTGGTACTCAGTACATATTTGTTGGACTGACTACTGCTGTGCCAATTTTGTATTGGTAAATAATGTCTTTTCAATCTTA	CCTGAAAGAGAATCAAAAACATTTCCACTTATTTCTGAAAGGCCAATCAGGAAACAAACATGCATTGCCCCATCAGCCCACTGAATACACACAGCACTTGGCAAGTGACCTAGAACAATACCAGGACCCACCACACAGAGACCTTTTTTTTTGGAGACAGAGTCTCTCTCTGTCGCACCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCACTGCAACCTCCGCCTCCCAGATTCAAGGGATTCTCCTACCTCAGTCTCCCAAGTAGCTGGGACTACAGGCACCCACCACCACACCAGGCTAATTTTTTGTATTTTTAGGAGATGGGGTTTCACCATATTGGTCAGGCTGATCTCGAATTCCGAACCTCAGGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCAGCCCAGAGACCATCTTAATCCACAGATAACTCCTTAAGGAAATTTGTTTCCCAAGTGAATCAGTCACCCACACTTCTATTAAAGTTACTCAACAATTTTCTCAGTTCCCTAGTTTTGACAGTGTTCTTTAATAGTTTCATTCTTTTTGTTCATTTATCTTTTCAATAGGTATTTACTGGATCTCAGTTCCTTTCTGTGCTACTGGGTAAACCTTCCTTCACTAAATTATTTATTTATTTTTCCATATTAGAGCAGTCACTCCCCTGGTATACAGTTGGTACTCAGTACATATTTGTTGGACTGACTACTGCTGTGCCAATTTTGTATTGGTAAATAATGTCTTTTCAATCTTA	-			P-0055752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	23	492	0	ENST00000268712.3:c.6733+2_6734del		p.X2245_splice	ENST00000268712	NM_006311.3	2245																																																																																
JAK3	3718	MSKCC	GRCh37	19	17943682	17943682	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	67	1269	0	ENST00000458235.1:c.2407T>C	p.Trp803Arg	p.W803R	ENST00000458235	NM_000215.3	803	Tgg/Cgg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204693	128204693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	84	1288	0	ENST00000341105.2:c.748C>T	p.Pro250Ser	p.P250S	ENST00000341105	NM_032638.4	250	Ccc/Tcc																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50479158	50479159	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0055752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	37	781	0	ENST00000394963.4:c.6_7delinsC	p.Ala3ProfsTer67	p.A3Pfs*67	ENST00000394963	NM_003076.4	2	gcGGcc/gcCcc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0055428-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			731	355	1033	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0055428-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			726	22	893	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913389		P-0055428-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			505	148	788	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63810718	63810718	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055428-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			323	104	479	0	ENST00000279873.7:c.805A>C	p.Lys269Gln	p.K269Q	ENST00000279873	NM_032199.2	269	Aag/Cag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57466829	57466829	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055428-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			453	47	431	0	ENST00000371085.3:c.48G>C	p.Glu16Asp	p.E16D	ENST00000371085	NM_000516.4	16	gaG/gaC																																																																															
NF2	4771	MSKCC	GRCh37	22	30067904	30067904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055428-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			776	41	886	0	ENST00000338641.4:c.1089G>A	p.Met363Ile	p.M363I	ENST00000338641	NM_000268.3	363	atG/atA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACCCCC			P-0055773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1190	846	1004	0	ENST00000275493.2:c.2311_2319dup	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	gac/gACAACCCCCac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577131	7577131	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	155	949	0	ENST00000269305.4:c.807del	p.Phe270LeufsTer75	p.F270Lfs*75	ENST00000269305	NM_001126112.2	269	agC/ag																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458270	12458270	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	82	642	4	ENST00000287820.6:c.892del	p.Leu298CysfsTer38	p.L298Cfs*38	ENST00000287820	NM_015869.4	296	aCc/ac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437612	56437612	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0055681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	58	497	1	ENST00000407977.2:c.850G>T	p.Glu284Ter	p.E284*	ENST00000407977		284	Gag/Tag																																																																															
TET2	54790	MSKCC	GRCh37	4	106196282	106196282	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs866214403		P-0055681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	75	455	0	ENST00000380013.4:c.4615C>T	p.Gln1539Ter	p.Q1539*	ENST00000380013	NM_001127208.2	1539	Cag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29685554	29685555	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs772757623		P-0055681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	69	528	0	ENST00000358273.4:c.8030dup	p.Leu2677PhefsTer16	p.L2677Ffs*16	ENST00000358273	NM_001042492.2	2676	aat/aaTt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59926501	59926501	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	62	691	0	ENST00000259008.2:c.496A>G	p.Thr166Ala	p.T166A	ENST00000259008	NM_032043.2	166	Act/Gct																																																																															
TET2	54790	MSKCC	GRCh37	4	106157722	106157722	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0055681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	52	317	0	ENST00000380013.4:c.2623A>T	p.Lys875Ter	p.K875*	ENST00000380013	NM_001127208.2	875	Aag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628158	187628158	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs768948260		P-0055681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	120	815	0	ENST00000441802.2:c.2824G>C	p.Glu942Gln	p.E942Q	ENST00000441802	NM_005245.3	942	Gaa/Caa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149516579	149516579	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	143	939	1	ENST00000261799.4:c.32C>A	p.Ala11Asp	p.A11D	ENST00000261799	NM_002609.3	11	gCc/gAc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324675	31324675	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	48	1032	0	ENST00000412585.2:c.133del	p.Arg45AlafsTer14	p.R45Afs*14	ENST00000412585	NM_005514.6	45	Cgc/gc																																																																															
ABL1	25	MSKCC	GRCh37	9	133730186	133730186	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0055681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	148	553	1	ENST00000318560.5:c.254-2A>T		p.X85_splice	ENST00000318560	NM_005157.4	85																																																																																
BTK	695	MSKCC	GRCh37	X	100608200	100608200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	71	525	0	ENST00000308731.7:c.1890G>T	p.Met630Ile	p.M630I	ENST00000308731	NM_000061.2	630	atG/atT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0055748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	274	362	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519980		P-0055748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	214	975	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016635	12016636	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0055748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	85	402	0	ENST00000353533.5:c.772_773del	p.Ile258CysfsTer9	p.I258Cfs*9	ENST00000353533	NM_003010.3	257	tcTAtt/tctt																																																																															
MSI1	4440	MSKCC	GRCh37	12	120806013	120806013	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1133	123	990	0	ENST00000257552.2:c.164C>G	p.Pro55Arg	p.P55R	ENST00000257552	NM_002442.3	55	cCc/cGc																																																																															
EP300	2033	MSKCC	GRCh37	22	41569690	41569690	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0055748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	63	249	0	ENST00000263253.7:c.4681A>T	p.Ser1561Cys	p.S1561C	ENST00000263253	NM_001429.3	1561	Agc/Tgc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060782	38060784	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0055770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	1240	1114	2	ENST00000250448.2:c.1205_1207del	p.Ile402del	p.I402del	ENST00000250448	NM_004496.3	402	aTCAac/aac																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562577	21562577	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1395329857		P-0055770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	52	162	0	ENST00000382592.4:c.1342C>T	p.Arg448Cys	p.R448C	ENST00000382592	NM_014572.2	448	Cgt/Tgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720700	89720849	+	inframe_deletion	In_Frame_Del	DEL	AGGAAACCTCAGAAAAAGTAGAAAATGGAAGTCTATGTGATCAAGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAATATCTAGTACTTACTTTAACAAAAAATGATCTTGACAAAGCAAATAAAGACAAAGCCA	AGGAAACCTCAGAAAAAGTAGAAAATGGAAGTCTATGTGATCAAGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAATATCTAGTACTTACTTTAACAAAAAATGATCTTGACAAAGCAAATAAAGACAAAGCCA	-			P-0055770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	97	260	0	ENST00000371953.3:c.852_1001del	p.Glu284_Asn334delinsAsp	p.E284_N334delinsD	ENST00000371953	NM_000314.4	284	gAGGAAACCTCAGAAAAAGTAGAAAATGGAAGTCTATGTGATCAAGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAATATCTAGTACTTACTTTAACAAAAAATGATCTTGACAAAGCAAATAAAGACAAAGCCAac/gac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910761	32910761	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs886040419		P-0055770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	169	303	0	ENST00000380152.3:c.2269A>T	p.Lys757Ter	p.K757*	ENST00000380152		757	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576893	7576897	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTG	GGCTG	-			P-0055770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	400	786	1	ENST00000269305.4:c.949_953del	p.Gln317LysfsTer18	p.Q317Kfs*18	ENST00000269305	NM_001126112.2	317	CAGCCa/a																																																																															
MST1R	4486	MSKCC	GRCh37	3	49924820	49924820	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	346	1050	0	ENST00000296474.3:c.4123C>G	p.Pro1375Ala	p.P1375A	ENST00000296474	NM_002447.2	1375	Cca/Gca																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323150	31323174	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTGCTCTTCTCCAGAAGGCACCA	CTCTGCTCTTCTCCAGAAGGCACCA	-			P-0055770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1215	191	867	0	ENST00000412585.2:c.815_839del	p.Val272AspfsTer17	p.V272Dfs*17	ENST00000412585	NM_005514.6	272	gTGGTGCCTTCTGGAGAAGAGCAGAGa/ga																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793780	89793780	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	85	411	0	ENST00000336032.3:c.849G>C	p.Lys283Asn	p.K283N	ENST00000336032	NM_006813.2	283	aaG/aaC																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249755	110249756	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0055770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	211	1015	0	ENST00000374672.4:c.919dup	p.Leu307ProfsTer16	p.L307Pfs*16	ENST00000374672	NM_004235.4	307	ctg/cCtg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918580	44918583	+	frameshift_variant	Frame_Shift_Del	DEL	TGGA	TGGA	-			P-0055770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	331	229	0	ENST00000377967.4:c.1067_1070del	p.Met356ThrfsTer2	p.M356Tfs*2	ENST00000377967	NM_021140.2	355	TGGAtg/tg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061127	38061199	+	protein_altering_variant	In_Frame_Del	DEL	TGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTT	TGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTT	GGGGGCCGGCGGCGGGGGC			P-0055770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	610	165	0	ENST00000250448.2:c.790_862delinsGCCCCCGCCGCCGGCCCCC	p.Lys264_Lys288delinsAlaProAlaAlaGlyProGln	p.K264_K288delinsAPAAGPQ	ENST00000250448	NM_004496.3	264	AAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAag/GCCCCCGCCGCCGGCCCCCag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017392-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			260	255	36	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017392-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	428	154	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974813	21974813	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017392-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			56	46	21	0	ENST00000304494.5:c.14C>G	p.Ala5Gly	p.A5G	ENST00000304494	NM_000077.4	5	gCg/gGg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974819	21974822	+	frameshift_variant	Frame_Shift_Del	DEL	GGCT	GGCT	-			P-0017392-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			50	38	18	0	ENST00000304494.5:c.5_8del	p.Glu2GlyfsTer23	p.E2Gfs*23	ENST00000304494	NM_000077.4	2	gAGCCg/gg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929235	44929235	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017392-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			253	204	41	0	ENST00000377967.4:c.2335del	p.Gln779SerfsTer6	p.Q779Sfs*6	ENST00000377967	NM_021140.2	779	Cag/ag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0055604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	18	290	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0055604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	8	391	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14024574	14024574	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143479220		P-0055604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	12	271	0	ENST00000311895.7:c.800G>A	p.Arg267His	p.R267H	ENST00000311895	NM_005236.2	267	cGc/cAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160660	56160661	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0055604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	76	351	0	ENST00000399503.3:c.935dup	p.Met312IlefsTer14	p.M312Ifs*14	ENST00000399503	NM_005921.1	312	atg/aTtg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56176620	56176621	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0055604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	21	320	0	ENST00000399503.3:c.2171_2172dup	p.Lys725Ter	p.K725*	ENST00000399503	NM_005921.1	724	cta/cTAta																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820668	3820668	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768030911		P-0048103-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			620	123	889	0	ENST00000262367.5:c.2783C>T	p.Pro928Leu	p.P928L	ENST00000262367	NM_004380.2	928	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579346	7579348	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs764486868		P-0048103-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	120	693	0	ENST00000269305.4:c.339_341del	p.Phe113del	p.F113del	ENST00000269305	NM_001126112.2	113	ttCTTg/ttg																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0048103-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			212	62	325	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032071	26032071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048103-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			517	49	527	0	ENST00000244661.2:c.218G>A	p.Arg73Gln	p.R73Q	ENST00000244661	NM_003537.3	73	cGa/cAa																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0052760-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			571	17	677	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0052760-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			597	51	502	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971151	21971152	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGA			P-0052760-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			420	25	496	0	ENST00000304494.5:c.206_207insTCCG	p.Glu69AspfsTer52	p.E69Dfs*52	ENST00000304494	NM_000077.4	69	gag/gaTCCGg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50826617	50826617	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0055658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	50	217	0	ENST00000398568.2:c.2341+1G>C		p.X781_splice	ENST00000398568	NM_001042412.1	781																																																																																
FAT1	2195	MSKCC	GRCh37	4	187542327	187542327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	78	389	0	ENST00000441802.2:c.5413G>A	p.Ala1805Thr	p.A1805T	ENST00000441802	NM_005245.3	1805	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0055662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	200	975	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0055663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	105	243	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0055663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	663	698	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0055663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	627	740	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16049819	16049819	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	147	394	0	ENST00000268712.3:c.953G>C	p.Trp318Ser	p.W318S	ENST00000268712	NM_006311.3	318	tGg/tCg																																																																															
MET	4233	MSKCC	GRCh37	7	116399458	116399458	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0055663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	207	476	0	ENST00000397752.3:c.2278A>T	p.Ile760Leu	p.I760L	ENST00000397752	NM_000245.2	760	Ata/Tta																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223445	53223445	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	175	933	0	ENST00000375401.3:c.3914T>C	p.Leu1305Ser	p.L1305S	ENST00000375401	NM_004187.3	1305	tTg/tCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0055664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	34	345	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0055664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	45	626	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44911007	44911010	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0055664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	25	323	0	ENST00000377967.4:c.711_714del	p.Ser238HisfsTer3	p.S238Hfs*3	ENST00000377967	NM_021140.2	236	aaTCTT/aa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519920		P-0055679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	115	199	0	ENST00000397062.3:c.85G>T	p.Asp29Tyr	p.D29Y	ENST00000397062	NM_006164.4	29	Gat/Tat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023258	27023258	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	101	150	0	ENST00000324856.7:c.365del	p.Gly122AlafsTer110	p.G122Afs*110	ENST00000324856	NM_006015.4	122	Ggc/gc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100459	8100459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	367	807	0	ENST00000346208.3:c.433C>T	p.His145Tyr	p.H145Y	ENST00000346208		145	Cac/Tac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0055682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	489	727	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966608	36966608	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766774692		P-0055682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	75	823	3	ENST00000358127.4:c.718G>A	p.Val240Met	p.V240M	ENST00000358127	NM_001280556.1	240	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579316	7579316	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	256	701	0	ENST00000269305.4:c.371del	p.Cys124SerfsTer46	p.C124Sfs*46	ENST00000269305	NM_001126112.2	124	tGc/tc																																																																															
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs864622007		P-0055684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	388	336	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692792	89692792	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs779530981		P-0055684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	176	372	0	ENST00000371953.3:c.276C>A	p.Asp92Glu	p.D92E	ENST00000371953	NM_000314.4	92	gaC/gaA																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754325	57754325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	214	398	0	ENST00000274289.3:c.526G>T	p.Val176Leu	p.V176L	ENST00000274289	NM_006622.3	176	Gtg/Ttg																																																																															
BBC3	27113	MSKCC	GRCh37	19	47729917	47729917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	139	502	0	ENST00000449228.1:c.472C>T	p.Pro158Ser	p.P158S	ENST00000449228	NM_001127240.2	158	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578231	7578245	+	inframe_deletion	In_Frame_Del	DEL	CAAATACTCCACACG	CAAATACTCCACACG	-			P-0055684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	340	746	0	ENST00000269305.4:c.604_618del	p.Arg202_Leu206del	p.R202_L206del	ENST00000269305	NM_001126112.2	202	CGTGTGGAGTATTTG/-																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533735	63533735	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	358	848	0	ENST00000307078.5:c.1419C>G	p.His473Gln	p.H473Q	ENST00000307078	NM_004655.3	473	caC/caG																																																																															
SETD2	29072	MSKCC	GRCh37	3	47079248	47079248	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	274	509	0	ENST00000409792.3:c.7258C>G	p.Pro2420Ala	p.P2420A	ENST00000409792	NM_014159.6	2420	Cct/Gct																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169999729	169999729	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	39	390	0	ENST00000295797.4:c.1040A>G	p.Gln347Arg	p.Q347R	ENST00000295797	NM_002740.5	347	cAa/cGa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031963	26031963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0055684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	274	533	0	ENST00000244661.2:c.326del	p.Asn109ThrfsTer10	p.N109Tfs*10	ENST00000244661	NM_003537.3	109	aAc/ac																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508366	106508366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	226	474	0	ENST00000359195.3:c.360C>G	p.Asp120Glu	p.D120E	ENST00000359195	NM_002649.2	120	gaC/gaG																																																																															
MET	4233	MSKCC	GRCh37	7	116339432	116339432	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0055684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	218	405	0	ENST00000397752.3:c.294T>A	p.Cys98Ter	p.C98*	ENST00000397752	NM_000245.2	98	tgT/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519983		P-0046511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	461	869	0	ENST00000269305.4:c.823T>C	p.Cys275Arg	p.C275R	ENST00000269305	NM_001126112.2	275	Tgt/Cgt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426688	212426688	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	90	668	0	ENST00000342788.4:c.2427C>G	p.His809Gln	p.H809Q	ENST00000342788	NM_005235.2	809	caC/caG																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056241	26056241	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	120	708	0	ENST00000343677.2:c.416A>C	p.Lys139Thr	p.K139T	ENST00000343677	NM_005319.3	139	aAg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0055305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			567	393	920	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286205	66286205	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777851171		P-0055305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			357	21	372	0	ENST00000273854.3:c.1481G>A	p.Arg494His	p.R494H	ENST00000273854	NM_004439.5	494	cGt/cAt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220433	1220433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			630	151	965	0	ENST00000326873.7:c.526G>T	p.Asp176Tyr	p.D176Y	ENST00000326873	NM_000455.4	176	Gac/Tac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143964	11143964	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0055305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			417	94	628	0	ENST00000344626.4:c.3547-2A>G		p.X1183_splice	ENST00000344626	NM_003072.3	1183																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10610097	10610097	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0055305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			570	117	901	0	ENST00000171111.5:c.613G>T	p.Glu205Ter	p.E205*	ENST00000171111	NM_203500.1	205	Gag/Tag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137075	64137075	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			467	51	572	1	ENST00000334205.4:c.1586G>T	p.Arg529Leu	p.R529L	ENST00000334205	NM_003942.2	529	cGc/cTc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110040	115110040	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			577	110	938	1	ENST00000257566.3:c.1838C>A	p.Ala613Asp	p.A613D	ENST00000257566	NM_016569.3	613	gCc/gAc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143094915	143094915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			487	94	571	0	ENST00000262992.4:c.1229C>A	p.Ala410Glu	p.A410E	ENST00000262992	NM_001101669.1	410	gCa/gAa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30668366	30668366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			603	78	708	0	ENST00000376406.3:c.6146G>C	p.Cys2049Ser	p.C2049S	ENST00000376406	NM_014641.2	2049	tGc/tCc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978632	70978632	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			548	92	681	1	ENST00000276594.2:c.1021G>T	p.Ala341Ser	p.A341S	ENST00000276594	NM_024504.3	341	Gct/Tct																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662754	227662754	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			696	108	931	0	ENST00000305123.5:c.701G>T	p.Gly234Val	p.G234V	ENST00000305123	NM_005544.2	234	gGg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0055311-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			503	89	432	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0055311-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			850	191	827	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
ALK	238	MSKCC	GRCh37	2	29462643	29462643	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187200776		P-0055311-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	223	930	0	ENST00000389048.3:c.2258G>A	p.Arg753Gln	p.R753Q	ENST00000389048	NM_004304.4	753	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730882026		P-0055693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	328	680	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0055693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	279	528	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0055693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	131	242	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910617	29910617	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199474377		P-0055693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1631	92	1344	1	ENST00000376809.5:c.157G>A	p.Asp53Asn	p.D53N	ENST00000376809	NM_002116.7	53	Gac/Aac																																																																															
APC	324	MSKCC	GRCh37	5	112174759	112174760	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0055693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	52	238	0	ENST00000257430.4:c.3473_3474del	p.Arg1158ThrfsTer5	p.R1158Tfs*5	ENST00000257430	NM_000038.5	1156	gaAGag/gaag																																																																															
PARP1	142	MSKCC	GRCh37	1	226553741	226553741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	35	434	0	ENST00000366794.5:c.2419G>A	p.Asp807Asn	p.D807N	ENST00000366794	NM_001618.3	807	Gat/Aat																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15965123	15965123	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	44	497	0	ENST00000268712.3:c.5473G>C	p.Val1825Leu	p.V1825L	ENST00000268712	NM_006311.3	1825	Gtg/Ctg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306736	41306736	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0055693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	293	688	0	ENST00000373198.4:c.923A>C	p.Lys308Thr	p.K308T	ENST00000373198	NM_133170.3	308	aAg/aCg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117717424	117717424	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	35	326	0	ENST00000368508.3:c.783T>G	p.Phe261Leu	p.F261L	ENST00000368508	NM_002944.2	261	ttT/ttG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0055701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	320	408	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577527	7577542	+	frameshift_variant	Frame_Shift_Del	DEL	GGATGGGCCTCCGGTT	GGATGGGCCTCCGGTT	-			P-0055701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	228	916	0	ENST00000269305.4:c.739_754del	p.Asn247SerfsTer93	p.N247Sfs*93	ENST00000269305	NM_001126112.2	247	AACCGGAGGCCCATCCtc/tc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938593	44938594	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0055701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	129	197	0	ENST00000377967.4:c.3144_3144+1del		p.LR1047fs	ENST00000377967	NM_021140.2	1047	ttGAga/ttga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118390416	118390416	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520053		P-0055702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	386	679	0	ENST00000534358.1:c.11230C>T	p.Arg3744Ter	p.R3744*	ENST00000534358	NM_005933.3	3744	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410555	63410555	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	433	874	0	ENST00000330258.3:c.2612G>T	p.Arg871Leu	p.R871L	ENST00000330258	NM_152424.3	871	cGa/cTa																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24135817	24135817	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	309	516	0	ENST00000263121.7:c.305del	p.Gly102AlafsTer41	p.G102Afs*41	ENST00000263121	NM_003073.3	102	Ggc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0055706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	78	383	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	150	756	0	ENST00000269305.4:c.542G>C	p.Arg181Pro	p.R181P	ENST00000269305	NM_001126112.2	181	cGc/cCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519991		P-0055707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	169	977	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182641	38182641	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs387907272		P-0055707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	17	481	0	ENST00000396334.3:c.794T>C	p.Leu265Pro	p.L265P	ENST00000396334	NM_002468.4	265	cTg/cCg																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805604	46805604	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1369403058		P-0055712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	93	1115	0	ENST00000290295.7:c.352G>A	p.Glu118Lys	p.E118K	ENST00000290295	NM_006361.5	118	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863224683		P-0055712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	95	953	0	ENST00000269305.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000269305	NM_001126112.2	130	Ctc/Ttc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40474492	40474492	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113994139		P-0055712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	41	492	0	ENST00000264657.5:c.1909G>A	p.Val637Met	p.V637M	ENST00000264657	NM_139276.2	637	Gtg/Atg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198274638	198274638	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	120	664	0	ENST00000335508.6:c.760T>C	p.Trp254Arg	p.W254R	ENST00000335508	NM_012433.2	254	Tgg/Cgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0055714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	863	899	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
AR	367	MSKCC	GRCh37	X	66765112	66765112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	253	639	0	ENST00000374690.3:c.124C>A	p.Pro42Thr	p.P42T	ENST00000374690	NM_000044.3	42	Cca/Aca																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246570	46246570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	121	214	0	ENST00000334344.6:c.4664C>A	p.Ala1555Asp	p.A1555D	ENST00000334344	NM_152641.2	1555	gCt/gAt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99482451	99482451	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	250	518	0	ENST00000268035.6:c.3319C>G	p.Pro1107Ala	p.P1107A	ENST00000268035	NM_000875.3	1107	Cca/Gca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311667	15311667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			10	10	16	0	ENST00000263388.2:c.50C>T	p.Pro17Leu	p.P17L	ENST00000263388	NM_000435.2	17	cCg/cTg																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62319108	62319627	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCTGGAGATGCAGATGTACGGGCCACCCCTGCCAGGGCCTGAGCACCGGTGACACCTCTGACATCAGCGGGGTGGAAGTGGTGGGGGTCCCCATGAGCCGGGTGCTGGGGGTCTCGGGCCTCGAGGGCTAAAGGGGTGCTGGTGCACTTCCCCACTGTCTGCTCCCTCTGGCCACGCTCAGCCCTTTCCCAGTCTGCCTGGAGAACCCACACATCATCGACAAGCACCAGATCTGGGTGGGGGTCGTCCCCAGAGGCCCCGATGGAGCCCAGTTGAGCTCCGCGTTTGACAGACGGTGAGGGCCTGTCCCTGGGCCCTGCTGGGGTGGGAGGTGGGGGAGCACTGAGGCCTGAGGTCCTGAGCAGTGGCCTCTCCGGCTCTAGGTTTTCCGAGGAGTGCTTATCCTCCCTGGGGAAGGCTCTGGGTGAGTGCCCTGAATGCCCCAGCTGTGCCCATCCTGGATCCTGGACCCCTGCTCCCAAGAGCTGGTAGGGAACCCTGCAGACATCCTGCCCCTGC	CTCTGGAGATGCAGATGTACGGGCCACCCCTGCCAGGGCCTGAGCACCGGTGACACCTCTGACATCAGCGGGGTGGAAGTGGTGGGGGTCCCCATGAGCCGGGTGCTGGGGGTCTCGGGCCTCGAGGGCTAAAGGGGTGCTGGTGCACTTCCCCACTGTCTGCTCCCTCTGGCCACGCTCAGCCCTTTCCCAGTCTGCCTGGAGAACCCACACATCATCGACAAGCACCAGATCTGGGTGGGGGTCGTCCCCAGAGGCCCCGATGGAGCCCAGTTGAGCTCCGCGTTTGACAGACGGTGAGGGCCTGTCCCTGGGCCCTGCTGGGGTGGGAGGTGGGGGAGCACTGAGGCCTGAGGTCCTGAGCAGTGGCCTCTCCGGCTCTAGGTTTTCCGAGGAGTGCTTATCCTCCCTGGGGAAGGCTCTGGGTGAGTGCCCTGAATGCCCCAGCTGTGCCCATCCTGGATCCTGGACCCCTGCTCCCAAGAGCTGGTAGGGAACCCTGCAGACATCCTGCCCCTGC	-			P-0055714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1332	229	964	0	ENST00000508582.2:c.1540_1709-25del		p.X514_splice	ENST00000508582		514																																																																																
ROS1	6098	MSKCC	GRCh37	6	117674303	117674303	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	185	343	0	ENST00000368508.3:c.4171G>C	p.Asp1391His	p.D1391H	ENST00000368508	NM_002944.2	1391	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519980		P-0055302-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			562	161	487	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265535	152265535	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs571716552		P-0055302-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			460	151	418	0	ENST00000206249.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000206249	NM_000125.3	330	Gag/Aag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391982	139391982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751048658		P-0055302-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			742	42	574	0	ENST00000277541.6:c.6209G>A	p.Arg2070Gln	p.R2070Q	ENST00000277541	NM_017617.3	2070	cGg/cAg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739135	46739135	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1487464723		P-0055302-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			447	70	429	0	ENST00000371975.4:c.1484C>T	p.Ser495Leu	p.S495L	ENST00000371975	NM_003579.3	495	tCa/tTa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690810	89690810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055302-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			207	88	224	1	ENST00000371953.3:c.217G>A	p.Glu73Lys	p.E73K	ENST00000371953	NM_000314.4	73	Gaa/Aaa																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732404	74732404	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055302-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			499	148	378	0	ENST00000359995.5:c.505T>G	p.Ser169Ala	p.S169A	ENST00000359995	NM_001195427.1	169	Tcc/Gcc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030213	180030213	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055302-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			517	87	465	0	ENST00000261937.6:c.4071C>G	p.Phe1357Leu	p.F1357L	ENST00000261937	NM_182925.4	1357	ttC/ttG																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38153313	38153313	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0055302-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			475	43	326	0	ENST00000317025.8:c.2915+1G>T		p.X972_splice	ENST00000317025	NM_023034.1	972																																																																																
BLM	641	MSKCC	GRCh37	15	91303880	91303880	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768127491		P-0055545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	58	364	0	ENST00000355112.3:c.1277C>T	p.Ser426Leu	p.S426L	ENST00000355112	NM_000057.2	426	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0055545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	81	565	1	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0055545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			225	83	277	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102198850	102198850	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			245	507	237	0	ENST00000263464.3:c.1021C>G	p.Leu341Val	p.L341V	ENST00000263464	NM_001165.4	341	Cta/Gta																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136825	2136825	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			608	88	640	0	ENST00000219476.3:c.4942A>G	p.Ile1648Val	p.I1648V	ENST00000219476	NM_000548.3	1648	Att/Gtt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993702	72993702	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			363	95	531	0	ENST00000268489.5:c.343G>T	p.Asp115Tyr	p.D115Y	ENST00000268489	NM_006885.3	115	Gac/Tac																																																																															
FANCA	2175	MSKCC	GRCh37	16	89811424	89811424	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			576	31	626	0	ENST00000389301.3:c.3569A>G	p.Gln1190Arg	p.Q1190R	ENST00000389301	NM_000135.2	1190	cAg/cGg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437633	52437633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			502	60	544	0	ENST00000460680.1:c.1528C>A	p.Pro510Thr	p.P510T	ENST00000460680	NM_004656.3	510	Cct/Act																																																																															
EGFR	1956	MSKCC	GRCh37	7	55269449	55269449	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0055545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			719	126	590	0	ENST00000275493.2:c.3136A>T	p.Thr1046Ser	p.T1046S	ENST00000275493	NM_005228.3	1046	Acc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0055618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	86	215	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0055618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	177	314	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662610	227662610	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	94	396	1	ENST00000305123.5:c.845T>C	p.Val282Ala	p.V282A	ENST00000305123	NM_005544.2	282	gTc/gCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928010	178928010	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	79	198	0	ENST00000263967.3:c.1288T>C	p.Phe430Leu	p.F430L	ENST00000263967	NM_006218.2	430	Ttt/Ctt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256287	16256287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	73	301	0	ENST00000375759.3:c.3552G>A	p.Met1184Ile	p.M1184I	ENST00000375759	NM_015001.2	1184	atG/atA																																																																															
CBL	867	MSKCC	GRCh37	11	119167696	119167696	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	140	339	0	ENST00000264033.4:c.2105C>A	p.Thr702Asn	p.T702N	ENST00000264033	NM_005188.3	702	aCt/aAt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820734	3820734	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	272	587	0	ENST00000262367.5:c.2717T>C	p.Val906Ala	p.V906A	ENST00000262367	NM_004380.2	906	gTg/gCg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858019	9858019	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	80	320	0	ENST00000330684.3:c.3382T>G	p.Phe1128Val	p.F1128V	ENST00000330684	NM_001134407.1	1128	Ttc/Gtc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123195665	123195665	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0055618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	116	115	0	ENST00000218089.9:c.1579T>G	p.Cys527Gly	p.C527G	ENST00000218089	NM_001042749.1	527	Tgt/Ggt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0055619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	50	219	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68835780	68835781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0055619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	97	397	0	ENST00000261769.5:c.377dup	p.Pro127AlafsTer41	p.P127Afs*41	ENST00000261769	NM_004360.3	124	cgc/cgCc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	90	423	0	ENST00000349310.3:c.155T>G	p.Leu52Arg	p.L52R	ENST00000349310	NM_001014432.1	52	cTc/cGc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717733	89717733	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	78	269	0	ENST00000371953.3:c.758T>C	p.Ile253Thr	p.I253T	ENST00000371953	NM_000314.4	253	aTc/aCc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123205131	123205131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	46	277	0	ENST00000218089.9:c.2491G>A	p.Asp831Asn	p.D831N	ENST00000218089	NM_001042749.1	831	Gat/Aat																																																																															
ATRX	546	MSKCC	GRCh37	X	76937335	76937335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	24	382	0	ENST00000373344.5:c.3413G>T	p.Arg1138Ile	p.R1138I	ENST00000373344	NM_000489.3	1138	aGa/aTa																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78426120	78426120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	33	419	0	ENST00000370768.2:c.1405C>T	p.His469Tyr	p.H469Y	ENST00000370768	NM_003902.3	469	Cat/Tat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0055502-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			392	77	418	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0055502-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			485	55	434	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259439	55259439	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs397517126		P-0055502-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			285	49	334	0	ENST00000275493.2:c.2497T>G	p.Leu833Val	p.L833V	ENST00000275493	NM_005228.3	833	Ttg/Gtg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046749	180046749	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121909657		P-0055502-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			447	47	662	0	ENST00000261937.6:c.2563G>A	p.Ala855Thr	p.A855T	ENST00000261937	NM_182925.4	855	Gcc/Acc																																																																															
MGA	23269	MSKCC	GRCh37	15	42003238	42003238	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0055502-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			331	50	374	0	ENST00000219905.7:c.2777del	p.Lys926SerfsTer7	p.K926Sfs*7	ENST00000219905	NM_001164273.1	925	ccA/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0043364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			307	72	681	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0043364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			225	92	454	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110332	3110332	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0043364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	56	425	0	ENST00000078429.4:c.321+1G>A		p.X107_splice	ENST00000078429	NM_002067.2	107																																																																																
SOX17	64321	MSKCC	GRCh37	8	55371987	55371987	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	18	478	0	ENST00000297316.4:c.677C>G	p.Pro226Arg	p.P226R	ENST00000297316	NM_022454.3	226	cCg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0055521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	70	675	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023769	27023769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	24	277	0	ENST00000324856.7:c.879del	p.Thr294ProfsTer69	p.T294Pfs*69	ENST00000324856	NM_006015.4	292	aCc/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0055521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	31	385	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0055556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	98	409	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0055556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	123	681	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303035	15303035	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777257132		P-0055556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	152	1128	4	ENST00000263388.2:c.415G>A	p.Asp139Asn	p.D139N	ENST00000263388	NM_000435.2	139	Gat/Aat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604685	48604686	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TATCC			P-0055556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	69	452	0	ENST00000342988.3:c.1508_1509insATCCT	p.Met503IlefsTer3	p.M503Ifs*3	ENST00000342988	NM_005359.5	503	atg/aTATCCtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0024337-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			542	142	830	4	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182057	38182057	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0024337-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	108	601	0	ENST00000396334.3:c.681G>C	p.Lys227Asn	p.K227N	ENST00000396334	NM_002468.4	227	aaG/aaC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927983	178927988	+	inframe_deletion	In_Frame_Del	DEL	CCATTG	CCATTG	-			P-0024337-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			230	45	361	0	ENST00000263967.3:c.1261_1266del	p.Pro421_Leu422del	p.P421_L422del	ENST00000263967	NM_006218.2	421	CCATTG/-																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			400	33	547	0	ENST00000347630.2:c.397T>A	p.Phe133Ile	p.F133I	ENST00000347630	NM_001007230.1	133	Ttc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0055310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			664	68	817	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0055310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			413	41	441	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500477	99500477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			707	53	1038	0	ENST00000268035.6:c.3910C>T	p.Pro1304Ser	p.P1304S	ENST00000268035	NM_000875.3	1304	Ccc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0055395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	20	396	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0055395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	27	668	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0055398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	90	404	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411783	63411783	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0055398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	142	688	1	ENST00000330258.3:c.1384G>T	p.Glu462Ter	p.E462*	ENST00000330258	NM_152424.3	462	Gaa/Taa																																																																															
MSI1	4440	MSKCC	GRCh37	12	120784077	120784077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	74	773	1	ENST00000257552.2:c.908G>A	p.Arg303His	p.R303H	ENST00000257552	NM_002442.3	303	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175925	112175925	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0055398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	70	205	0	ENST00000257430.4:c.4634C>A	p.Ser1545Ter	p.S1545*	ENST00000257430	NM_000038.5	1545	tCa/tAa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740362	58740362	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1057524700		P-0055398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	46	361	0	ENST00000305921.3:c.1267G>T	p.Glu423Ter	p.E423*	ENST00000305921	NM_003620.3	423	Gag/Tag																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46574203	46574203	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0055398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	104	440	0	ENST00000263734.3:c.217+1G>T		p.X73_splice	ENST00000263734	NM_001430.4	73																																																																																
APC	324	MSKCC	GRCh37	5	112174170	112174170	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	22	308	0	ENST00000257430.4:c.2879del	p.Ser960Ter	p.S960*	ENST00000257430	NM_000038.5	960	tCa/ta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0055462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	47	459	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221243	1221243	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0055462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	84	1110	0	ENST00000326873.7:c.766G>T	p.Glu256Ter	p.E256*	ENST00000326873	NM_000455.4	256	Gaa/Taa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271870	15271870	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528151296		P-0055462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	54	1446	0	ENST00000263388.2:c.6569C>T	p.Ala2190Val	p.A2190V	ENST00000263388	NM_000435.2	2190	gCg/gTg																																																																															
BTK	695	MSKCC	GRCh37	X	100617189	100617189	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	79	832	0	ENST00000308731.7:c.560C>A	p.Pro187His	p.P187H	ENST00000308731	NM_000061.2	187	cCt/cAt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411387	63411387	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	101	1179	0	ENST00000330258.3:c.1780C>A	p.His594Asn	p.H594N	ENST00000330258	NM_152424.3	594	Cac/Aac																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741544	17741544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	52	566	0	ENST00000250003.3:c.215C>T	p.Ala72Val	p.A72V	ENST00000250003	NM_002478.4	72	gCc/gTc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923808	39923808	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	80	1109	0	ENST00000378444.4:c.3283C>A	p.Pro1095Thr	p.P1095T	ENST00000378444	NM_001123385.1	1095	Cca/Aca																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132438	11132438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	83	1230	1	ENST00000344626.4:c.2654G>T	p.Arg885Leu	p.R885L	ENST00000344626	NM_003072.3	885	cGc/cTc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456787	32456787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	83	949	0	ENST00000332351.3:c.105C>A	p.Asp35Glu	p.D35E	ENST00000332351	NM_024426.4	35	gaC/gaA																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954181	32954181	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	48	544	0	ENST00000380152.3:c.9155G>T	p.Arg3052Leu	p.R3052L	ENST00000380152		3052	cGg/cTg																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281455	49281455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	30	806	0	ENST00000282018.3:c.502G>T	p.Ala168Ser	p.A168S	ENST00000282018	NM_020377.2	168	Gct/Tct																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679765	88679765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	57	827	1	ENST00000360948.2:c.698G>T	p.Gly233Val	p.G233V	ENST00000360948	NM_001012338.2	233	gGc/gTc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396650	396650	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0055462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	91	933	0	ENST00000262320.3:c.376A>T	p.Lys126Ter	p.K126*	ENST00000262320	NM_003502.3	126	Aag/Tag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857551	9857551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	42	586	0	ENST00000330684.3:c.3850C>A	p.Leu1284Ile	p.L1284I	ENST00000330684	NM_001134407.1	1284	Cta/Ata																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794118	242794118	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	78	1061	0	ENST00000334409.5:c.610C>G	p.Arg204Gly	p.R204G	ENST00000334409	NM_005018.2	204	Cgc/Ggc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89462342	89462342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	48	596	1	ENST00000336596.2:c.1814C>T	p.Pro605Leu	p.P605L	ENST00000336596	NM_005233.5	605	cCt/cTt																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119582445	119582445	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	18	288	0	ENST00000316626.5:c.956G>C	p.Arg319Pro	p.R319P	ENST00000316626		319	cGa/cCa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513558	149513558	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	57	683	0	ENST00000261799.4:c.645C>A	p.Asn215Lys	p.N215K	ENST00000261799	NM_002609.3	215	aaC/aaA																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519771	137519772	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0055462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	14	226	0	ENST00000367739.4:c.866_867del	p.Ser289CysfsTer12	p.S289Cfs*12	ENST00000367739	NM_000416.2	289	tCT/t																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8733779	8733779	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0055462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	35	650	0	ENST00000356435.5:c.64+1G>A		p.X22_splice	ENST00000356435		22																																																																																
TSC1	7248	MSKCC	GRCh37	9	135801112	135801112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	23	386	0	ENST00000298552.3:c.225G>T	p.Arg75Ser	p.R75S	ENST00000298552	NM_001162426.1	75	agG/agT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410240	63410240	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	67	1051	0	ENST00000330258.3:c.2927G>T	p.Ser976Ile	p.S976I	ENST00000330258	NM_152424.3	976	aGc/aTc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519922		P-0055463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	52	753	1	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																															
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520017		P-0055463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1668	79	1294	0	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0055463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1134	57	932	0	ENST00000269305.4:c.672G>T	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaT																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032136	26032136	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	33	731	0	ENST00000244661.2:c.153G>C	p.Glu51Asp	p.E51D	ENST00000244661	NM_003537.3	51	gaG/gaC																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205313	61205313	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	49	588	0	ENST00000301761.2:c.253C>G	p.Leu85Val	p.L85V	ENST00000301761	NM_017841.2	85	Ctt/Gtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	8	713	0	ENST00000269305.4:c.712T>C	p.Cys238Arg	p.C238R	ENST00000269305	NM_001126112.2	238	Tgt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs864622237		P-0055478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	63	572	0	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175957514	175957514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	13	364	0	ENST00000367669.3:c.1882G>A	p.Gly628Arg	p.G628R	ENST00000367669	NM_022457.5	628	Ggg/Agg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77047169	77047169	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	41	527	0	ENST00000356341.3:c.1375G>C	p.Glu459Gln	p.E459Q	ENST00000356341	NM_002576.4	459	Gaa/Caa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944198	81944198	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	49	836	0	ENST00000359376.3:c.1807G>C	p.Asp603His	p.D603H	ENST00000359376	NM_002661.3	603	Gac/Cac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268057	55268057	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0055478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	21	683	1	ENST00000275493.2:c.2897T>G	p.Ile966Ser	p.I966S	ENST00000275493	NM_005228.3	966	aTc/aGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0055102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			498	1370	764	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578380	7578384	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CTGAG	CTGAG	-			P-0055102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			406	170	1073	0	ENST00000269305.4:c.546_550del	p.Cys182Ter	p.C182*	ENST00000269305	NM_001126112.2	182	tgCTCAGat/tgat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0055175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			260	84	344	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ATM	472	MSKCC	GRCh37	11	108099973	108099973	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0055175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			197	22	240	0	ENST00000278616.4:c.254C>G	p.Ser85Ter	p.S85*	ENST00000278616	NM_000051.3	85	tCa/tGa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597327	10597354	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	CTCAACAGGTACAGTTCTGCTGGTCAAT	CTCAACAGGTACAGTTCTGCTGGTCAAT	-			P-0055175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	47	680	0	ENST00000171111.5:c.1849_*1del		p.*617*	ENST00000171111	NM_203500.1	617																																																																																
APC	324	MSKCC	GRCh37	5	112174404	112174404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			166	35	226	0	ENST00000257430.4:c.3113C>T	p.Ser1038Phe	p.S1038F	ENST00000257430	NM_000038.5	1038	tCt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0055309-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			632	25	473	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0055309-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			833	42	666	1	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577560	7577560	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055309-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			781	26	612	0	ENST00000269305.4:c.721T>G	p.Ser241Ala	p.S241A	ENST00000269305	NM_001126112.2	241	Tcc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578464	7578464	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			585	466	1129	0	ENST00000269305.4:c.466C>G	p.Arg156Gly	p.R156G	ENST00000269305	NM_001126112.2	156	Cgc/Ggc																																																																															
APC	324	MSKCC	GRCh37	5	112175060	112175061	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0055313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			116	81	165	0	ENST00000257430.4:c.3772dup	p.Thr1258AsnfsTer18	p.T1258Nfs*18	ENST00000257430	NM_000038.5	1257	gaa/gAaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68857347	68857347	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756092625		P-0055313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			485	212	493	0	ENST00000261769.5:c.1982G>A	p.Gly661Asp	p.G661D	ENST00000261769	NM_004360.3	661	gGt/gAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242482	+	protein_altering_variant	In_Frame_Del	DEL	GGAATTAAGAGAAGCAAC	GGAATTAAGAGAAGCAAC	ATT			P-0055313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			385	236	453	1	ENST00000275493.2:c.2235_2252delinsATT	p.Glu746_Thr751delinsLeu	p.E746_T751delinsL	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCAACa/aaATTa																																																																															
STAT3	6774	MSKCC	GRCh37	17	40483518	40483518	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0055313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			541	46	437	0	ENST00000264657.5:c.1081C>T	p.Gln361Ter	p.Q361*	ENST00000264657	NM_139276.2	361	Cag/Tag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713565	30713566	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0055313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			277	216	554	0	ENST00000359013.4:c.965_966insA	p.Asn323GlnfsTer5	p.N323Qfs*5	ENST00000359013	NM_001024847.2	322	atc/atAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240776	55240776	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17337079		P-0055313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			901	843	1080	1	ENST00000275493.2:c.2020G>A	p.Val674Ile	p.V674I	ENST00000275493	NM_005228.3	674	Gtt/Att																																																																															
TP53	7157	MSKCC	GRCh37	17	7577571	7577572	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGTAGT			P-0055410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	19	557	0	ENST00000269305.4:c.704_709dup	p.Asn235_Tyr236dup	p.N235_Y236dup	ENST00000269305	NM_001126112.2	235	atg/aACTACAtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0055449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	165	731	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0055449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	213	1226	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391075	89391075	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs995238704		P-0055449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	111	718	0	ENST00000336596.2:c.1141C>T	p.Arg381Cys	p.R381C	ENST00000336596	NM_005233.5	381	Cgc/Tgc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231410	46231410	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0055449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	43	408	0	ENST00000334344.6:c.1250C>G	p.Ser417Ter	p.S417*	ENST00000334344	NM_152641.2	417	tCa/tGa																																																																															
STAT3	6774	MSKCC	GRCh37	17	40481793	40481793	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0055449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	24	419	0	ENST00000264657.5:c.1111G>A	p.Asp371Asn	p.D371N	ENST00000264657	NM_139276.2	371	Gac/Aac																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1331520	1331520	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	72	699	0	ENST00000381566.1:c.8G>C	p.Arg3Pro	p.R3P	ENST00000381566		3	cGg/cCg																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0055451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	75	496	1	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006898	47006898	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0055451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	328	525	0	ENST00000329236.7:c.17+1G>T		p.X6_splice	ENST00000329236	NM_001204466.1	6																																																																																
ANKRD11	29123	MSKCC	GRCh37	16	89347895	89347895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	148	919	0	ENST00000301030.4:c.5055G>A	p.Met1685Ile	p.M1685I	ENST00000301030	NM_001256183.1	1685	atG/atA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280058	66280058	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	172	367	3	ENST00000273854.3:c.1631C>A	p.Thr544Lys	p.T544K	ENST00000273854	NM_004439.5	544	aCa/aAa																																																																															
SDHB	6390	MSKCC	GRCh37	1	17350491	17350491	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	89	698	0	ENST00000375499.3:c.619C>G	p.Leu207Val	p.L207V	ENST00000375499	NM_003000.2	207	Ctg/Gtg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937109	36937109	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0055451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	284	978	1	ENST00000361632.4:c.1210C>T	p.Gln404Ter	p.Q404*	ENST00000361632		404	Cag/Tag																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844416	156844416	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0055451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	364	1189	0	ENST00000524377.1:c.1249G>T	p.Gly417Trp	p.G417W	ENST00000524377	NM_002529.3	417	Ggg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108117708	108117708	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	52	257	0	ENST00000278616.4:c.919A>G	p.Lys307Glu	p.K307E	ENST00000278616	NM_000051.3	307	Aaa/Gaa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12043974	12043974	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	56	322	0	ENST00000396373.4:c.1353A>C	p.Glu451Asp	p.E451D	ENST00000396373	NM_001987.4	451	gaA/gaC																																																																															
ARID2	196528	MSKCC	GRCh37	12	46125098	46125098	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0055451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	69	238	0	ENST00000334344.6:c.284+1G>T		p.X95_splice	ENST00000334344	NM_152641.2	95																																																																																
ARID2	196528	MSKCC	GRCh37	12	46244618	46244619	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0055451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	193	646	0	ENST00000334344.6:c.2712_2713del	p.Gln905SerfsTer45	p.Q905Sfs*45	ENST00000334344	NM_152641.2	904	caGCaa/caaa																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233115	69233115	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	130	358	0	ENST00000462284.1:c.980G>C	p.Arg327Thr	p.R327T	ENST00000462284	NM_002392.5	327	aGa/aCa																																																																															
MGA	23269	MSKCC	GRCh37	15	42000302	42000303	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0055451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	132	472	0	ENST00000219905.7:c.2322dup	p.Ala775CysfsTer8	p.A775Cfs*8	ENST00000219905	NM_001164273.1	774	gat/gaTt																																																																															
MGA	23269	MSKCC	GRCh37	15	42041828	42041828	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0055451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	92	566	0	ENST00000219905.7:c.6023del	p.Ile2008LysfsTer14	p.I2008Kfs*14	ENST00000219905	NM_001164273.1	2008	aTa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578554	7578564	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTGTAGGAAG	ACTGTAGGAAG	-			P-0055451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	505	1112	0	ENST00000269305.4:c.376-10_376del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
ASXL2	55252	MSKCC	GRCh37	2	25976470	25976470	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	73	481	0	ENST00000435504.4:c.1075G>C	p.Glu359Gln	p.E359Q	ENST00000435504		359	Gag/Cag																																																																															
SOS1	6654	MSKCC	GRCh37	2	39241072	39241072	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	110	655	0	ENST00000402219.2:c.1999G>C	p.Asp667His	p.D667H	ENST00000402219	NM_005633.3	667	Gat/Cat																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022302	31022302	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	195	616	1	ENST00000375687.4:c.1787G>C	p.Arg596Pro	p.R596P	ENST00000375687	NM_015338.5	596	cGg/cCg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542680	187542680	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	325	538	0	ENST00000441802.2:c.5060G>T	p.Gly1687Val	p.G1687V	ENST00000441802	NM_005245.3	1687	gGg/gTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638860	176638860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	250	659	0	ENST00000439151.2:c.3460G>T	p.Val1154Leu	p.V1154L	ENST00000439151	NM_022455.4	1154	Gtg/Ttg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444460	50444460	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0055451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	250	393	0	ENST00000331340.3:c.390T>A	p.Asn130Lys	p.N130K	ENST00000331340	NM_006060.4	130	aaT/aaA																																																																															
MET	4233	MSKCC	GRCh37	7	116371843	116371843	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1715	344	497	0	ENST00000397752.3:c.1322C>G	p.Ser441Cys	p.S441C	ENST00000397752	NM_000245.2	441	tCt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0055492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	7	318	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578220	7578220	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0055492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	17	670	0	ENST00000269305.4:c.629del	p.Asn210ThrfsTer37	p.N210Tfs*37	ENST00000269305	NM_001126112.2	210	aAc/ac																																																																															
MED12	9968	MSKCC	GRCh37	X	70342647	70342647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	315	551	3	ENST00000374080.3:c.1408C>T	p.Arg470Cys	p.R470C	ENST00000374080		470	Cgc/Tgc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098963	47098963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	47	394	0	ENST00000409792.3:c.6311C>T	p.Ser2104Phe	p.S2104F	ENST00000409792	NM_014159.6	2104	tCt/tTt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11272502	11272502	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752142242		P-0055375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	126	349	6	ENST00000361445.4:c.3428C>T	p.Thr1143Met	p.T1143M	ENST00000361445	NM_004958.3	1143	aCg/aTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68846144	68846145	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0055375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	340	500	7	ENST00000261769.5:c.1116_1117del	p.Pro373AspfsTer13	p.P373Dfs*13	ENST00000261769	NM_004360.3	372	cCT/c																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022483-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	52	46	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028895	47028895	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0022483-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			201	53	82	0	ENST00000329236.7:c.199G>T	p.Glu67Ter	p.E67*	ENST00000329236	NM_001204466.1	67	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602878	10602878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022483-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			729	70	244	0	ENST00000171111.5:c.700C>T	p.Arg234Trp	p.R234W	ENST00000171111	NM_203500.1	234	Cgg/Tgg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176085773	176085773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022483-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			371	40	64	0	ENST00000367669.3:c.1013G>T	p.Ser338Ile	p.S338I	ENST00000367669	NM_022457.5	338	aGt/aTt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347456	89347456	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022483-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			618	59	348	0	ENST00000301030.4:c.5494A>T	p.Arg1832Trp	p.R1832W	ENST00000301030	NM_001256183.1	1832	Agg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576853	7576858	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTGAAG	CTGAAG	-			P-0022483-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			473	70	172	0	ENST00000269305.4:c.988_993del	p.Leu330_Gln331del	p.L330_Q331del	ENST00000269305	NM_001126112.2	330	CTTCAG/-																																																																															
NF1	4763	MSKCC	GRCh37	17	29559776	29559810	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCAAACAGGTGGCAGGAAACGTGGCATGTCTCG	GCGCAAACAGGTGGCAGGAAACGTGGCATGTCTCG	-			P-0022483-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	27	48	0	ENST00000358273.4:c.3374_3408del	p.Ala1125GlufsTer58	p.A1125Efs*58	ENST00000358273	NM_001042492.2	1125	GCGCAAACAGGTGGCAGGAAACGTGGCATGTCTCGg/g																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45423019	45423019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022483-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			367	23	66	0	ENST00000262160.6:c.109G>A	p.Glu37Lys	p.E37K	ENST00000262160	NM_005901.5	37	Gaa/Aaa																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091801	29091801	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022483-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			498	31	111	0	ENST00000328354.6:c.1156G>C	p.Gly386Arg	p.G386R	ENST00000328354	NM_007194.3	386	Gga/Cga																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138197196	138197196	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022483-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	40	82	0	ENST00000237289.4:c.698A>G	p.Tyr233Cys	p.Y233C	ENST00000237289	NM_001270507.1	233	tAc/tGc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971202	13971202	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs977319524		P-0022483-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	55	67	0	ENST00000405192.2:c.727G>T	p.Gly243Cys	p.G243C	ENST00000405192	NM_001163147.1	243	Ggc/Tgc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53230764	53230764	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022483-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			287	93	68	0	ENST00000375401.3:c.2029G>T	p.Glu677Ter	p.E677*	ENST00000375401	NM_004187.3	677	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0028809-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			318	33	621	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932045	39932045	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028809-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			335	27	724	0	ENST00000378444.4:c.2554T>G	p.Phe852Val	p.F852V	ENST00000378444	NM_001123385.1	852	Ttc/Gtc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024019	27024020	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0028809-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			101	11	154	0	ENST00000324856.7:c.1125_1126delinsT	p.Arg376GlyfsTer15	p.R376Gfs*15	ENST00000324856	NM_006015.4	375	gcCCgg/gcTgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0050182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	101	704	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0050182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	91	538	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575183	48575183	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	67	312	0	ENST00000342988.3:c.377T>G	p.Val126Gly	p.V126G	ENST00000342988	NM_005359.5	126	gTc/gGc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942773	44942773	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	86	281	0	ENST00000377967.4:c.3353T>G	p.Leu1118Arg	p.L1118R	ENST00000377967	NM_021140.2	1118	cTt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053214-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			235	326	665	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653805	89653805	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs876659443		P-0053214-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			157	192	352	0	ENST00000371953.3:c.103A>G	p.Met35Val	p.M35V	ENST00000371953	NM_000314.4	35	Atg/Gtg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021728	71021728	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053214-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			150	216	350	1	ENST00000318789.4:c.1630C>T	p.Arg544Ter	p.R544*	ENST00000318789	NM_032682.5	544	Cga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115818	8115831	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCTCGTTTAACC	CAGCTCGTTTAACC	-			P-0053214-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			577	261	557	0	ENST00000346208.3:c.1165_1178del	p.Ser389GlyfsTer113	p.S389Gfs*113	ENST00000346208		388	aaCAGCTCGTTTAACCcg/aacg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941404	71941404	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0053214-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			655	39	797	0	ENST00000298229.2:c.1091-2A>C		p.X364_splice	ENST00000298229	NM_001567.3	364																																																																																
PAK1	5058	MSKCC	GRCh37	11	77043774	77043774	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0053214-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			958	262	445	0	ENST00000356341.3:c.1551+1G>T		p.X517_splice	ENST00000356341	NM_002576.4	517																																																																																
TP53	7157	MSKCC	GRCh37	17	7578276	7578277	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGAG			P-0054566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	97	761	0	ENST00000269305.4:c.569_572dup	p.Gln192SerfsTer18	p.Q192Sfs*18	ENST00000269305	NM_001126112.2	191	cct/ccCTCCt																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182683483	182683483	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			457	156	463	0	ENST00000292782.4:c.62C>G	p.Ser21Cys	p.S21C	ENST00000292782	NM_020640.2	21	tCt/tGt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877366	28877366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	101	532	0	ENST00000282397.4:c.3955G>A	p.Ala1319Thr	p.A1319T	ENST00000282397	NM_002019.4	1319	Gcg/Acg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266711	198266711	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0055256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	70	621	0	ENST00000335508.6:c.2221A>G	p.Lys741Glu	p.K741E	ENST00000335508	NM_012433.2	741	Aag/Gag																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175957441	175957441	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	112	456	0	ENST00000367669.3:c.1955G>T	p.Gly652Val	p.G652V	ENST00000367669	NM_022457.5	652	gGa/gTa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618961	37618961	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	169	718	0	ENST00000447079.4:c.637G>T	p.Val213Leu	p.V213L	ENST00000447079	NM_015083.1	213	Gtg/Ttg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37038154	37038154	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	29	283	0	ENST00000231790.2:c.161G>T	p.Gly54Val	p.G54V	ENST00000231790	NM_000249.3	54	gGa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0055270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	173	547	1	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435357	110435357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	65	481	0	ENST00000375856.3:c.3044C>T	p.Pro1015Leu	p.P1015L	ENST00000375856	NM_003749.2	1015	cCg/cTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25994392	25994392	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	44	304	0	ENST00000435504.4:c.421del	p.Gln141SerfsTer26	p.Q141Sfs*26	ENST00000435504		141	Cag/ag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023212	27023230	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGGGCCCTAGGCCCGCC	CGCGGGCCCTAGGCCCGCC	-			P-0055272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	67	244	0	ENST00000324856.7:c.319_337del	p.Ala107Ter	p.A107*	ENST00000324856	NM_006015.4	106	aaCGCGGGCCCTAGGCCCGCC/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0055276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	147	436	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514420	103514422	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0055276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	24	327	0	ENST00000355739.4:c.923_925del	p.Leu308del	p.L308del	ENST00000355739	NM_000123.3	307	tcTCTt/tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7572960	7572960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	145	669	1	ENST00000269305.4:c.1149del	p.Met384CysfsTer38	p.M384Cfs*38	ENST00000269305	NM_001126112.2	383	ctC/ct																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0055289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	174	461	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	242	779	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																															
RB1	5925	MSKCC	GRCh37	13	48951141	48951141	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0055289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	128	438	0	ENST00000267163.4:c.1303G>T	p.Gly435Ter	p.G435*	ENST00000267163	NM_000321.2	435	Gga/Tga																																																																															
PARP1	142	MSKCC	GRCh37	1	226555250	226555250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	200	594	0	ENST00000366794.5:c.2337G>T	p.Arg779Ser	p.R779S	ENST00000366794	NM_001618.3	779	agG/agT																																																																															
FLT1	2321	MSKCC	GRCh37	13	28959108	28959108	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	215	464	0	ENST00000282397.4:c.2030C>A	p.Ser677Tyr	p.S677Y	ENST00000282397	NM_002019.4	677	tCc/tAc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50828205	50828205	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	104	622	0	ENST00000398568.2:c.2543A>C	p.His848Pro	p.H848P	ENST00000398568	NM_001042412.1	848	cAc/cCc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67650659	67650659	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	165	543	0	ENST00000264010.4:c.964C>A	p.His322Asn	p.H322N	ENST00000264010	NM_006565.3	322	Cac/Aac																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108292	8108292	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0055289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	283	864	0	ENST00000585124.1:c.932A>T	p.Asn311Ile	p.N311I	ENST00000585124	NM_004217.3	311	aAc/aTc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37871591	37871591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	113	1038	0	ENST00000269571.5:c.1201G>A	p.Glu401Lys	p.E401K	ENST00000269571		401	Gag/Aag																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78858823	78858823	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	295	877	0	ENST00000306801.3:c.1858G>T	p.Val620Phe	p.V620F	ENST00000306801	NM_020761.2	620	Gtc/Ttc																																																																															
BARD1	580	MSKCC	GRCh37	2	215646212	215646212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	61	372	0	ENST00000260947.4:c.386G>A	p.Arg129Lys	p.R129K	ENST00000260947	NM_000465.2	129	aGg/aAg																																																																															
SRC	6714	MSKCC	GRCh37	20	36031729	36031729	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0055289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	198	994	0	ENST00000358208.4:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000358208		520	Gag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790052	40790052	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	150	817	0	ENST00000373198.4:c.2679G>C	p.Leu893Phe	p.L893F	ENST00000373198	NM_133170.3	893	ttG/ttC																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485137	57485137	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0055289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	75	359	0	ENST00000371085.3:c.970+1G>T		p.X324_splice	ENST00000371085	NM_000516.4	324																																																																																
TERT	7015	MSKCC	GRCh37	5	1295238	1295238	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0055289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	101	477	0				ENST00000310581	NM_198253.2																																																																																	
HIST1H3J	8356	MSKCC	GRCh37	6	27858418	27858418	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	354	797	0	ENST00000359303.2:c.153G>T	p.Glu51Asp	p.E51D	ENST00000359303	NM_003535.2	51	gaG/gaT																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729515	41729515	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	168	730	0	ENST00000242208.4:c.1014G>T	p.Trp338Cys	p.W338C	ENST00000242208	NM_002192.2	338	tgG/tgT																																																																															
BRAF	673	MSKCC	GRCh37	7	140534483	140534483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	100	537	0	ENST00000288602.6:c.430G>T	p.Val144Leu	p.V144L	ENST00000288602	NM_004333.4	144	Gtg/Ttg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69039654	69039654	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0055289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	40	370	0	ENST00000288368.4:c.3766G>C	p.Asp1256His	p.D1256H	ENST00000288368	NM_024870.2	1256	Gat/Cat																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401240	139401240	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	118	1004	1	ENST00000277541.6:c.3829G>T	p.Asp1277Tyr	p.D1277Y	ENST00000277541	NM_017617.3	1277	Gac/Tac																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176105667	176105669	+	missense_variant	Missense_Mutation	ONP	TGG	TGG	AGT			P-0055289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	96	509	0	ENST00000367669.3:c.846_848delinsACT	p.Gln283Leu	p.Q283L	ENST00000367669	NM_022457.5	282	atCCAg/atACTg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs193920894		P-0055320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	77	576	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0055320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	138	754	1	ENST00000269305.4:c.823T>A	p.Cys275Ser	p.C275S	ENST00000269305	NM_001126112.2	275	Tgt/Agt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49939835	49939835	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371024286		P-0055335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	84	857	0	ENST00000296474.3:c.1208C>T	p.Ser403Leu	p.S403L	ENST00000296474	NM_002447.2	403	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579418	7579419	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0055335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	247	847	0	ENST00000269305.4:c.268_269del	p.Ser90LeufsTer58	p.S90Lfs*58	ENST00000269305	NM_001126112.2	90	TCc/c																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028821	47028821	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782070362		P-0055335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1598	95	884	0	ENST00000329236.7:c.125G>A	p.Arg42His	p.R42H	ENST00000329236	NM_001204466.1	42	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0055339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	39	783	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0055339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	127	1205	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0055339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	24	343	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0055339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	54	511	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372536	55372536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	107	1202	0	ENST00000297316.4:c.1226G>T	p.Cys409Phe	p.C409F	ENST00000297316	NM_022454.3	409	tGc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112116486	112116486	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0055339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	17	282	0	ENST00000257430.4:c.532-1G>A		p.X178_splice	ENST00000257430	NM_000038.5	178																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5265195	5265195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	39	1087	0	ENST00000357368.4:c.392C>T	p.Pro131Leu	p.P131L	ENST00000357368	NM_002850.3	131	cCc/cTc																																																																															
AXL	558	MSKCC	GRCh37	19	41762440	41762440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	59	871	2	ENST00000301178.4:c.2120G>A	p.Arg707His	p.R707H	ENST00000301178	NM_021913.4	707	cGt/cAt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296358	15296358	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055176-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			558	121	1180	3	ENST00000263388.2:c.2084del	p.Pro695ArgfsTer165	p.P695Rfs*165	ENST00000263388	NM_000435.2	695	cCg/cg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0055176-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			293	78	456	2	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055176-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			673	43	1126	1	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528825	157528825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055176-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			381	97	721	2	ENST00000346085.5:c.6554del	p.Pro2185ArgfsTer8	p.P2185Rfs*8	ENST00000346085	NM_020732.3	2184	Ccc/cc																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0055176-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			252	55	411	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055176-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	88	741	3	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0055176-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			388	42	598	0	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226259095	226259095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055176-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			42	12	49	0	ENST00000366813.1:c.326A>G	p.Asn109Ser	p.N109S	ENST00000366813		109	aAc/aGc																																																																															
CCND3	896	MSKCC	GRCh37	6	41903746	41903746	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055176-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			605	122	911	1	ENST00000372991.4:c.811del	p.Arg271GlyfsTer33	p.R271Gfs*33	ENST00000372991	NM_001760.3	271	Cgg/gg																																																																															
KDR	3791	MSKCC	GRCh37	4	55984968	55984968	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0055176-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			269	63	436	0	ENST00000263923.4:c.162-1G>A		p.X54_splice	ENST00000263923	NM_002253.2	54																																																																																
POLE	5426	MSKCC	GRCh37	12	133201565	133201565	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765125852		P-0055176-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			566	62	908	0	ENST00000320574.5:c.6673C>T	p.Arg2225Cys	p.R2225C	ENST00000320574	NM_006231.2	2225	Cgc/Tgc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775611	9775611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055176-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			469	107	846	2	ENST00000377346.4:c.154C>T	p.Arg52Cys	p.R52C	ENST00000377346	NM_005026.3	52	Cgc/Tgc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672551	30672551	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773270002		P-0055176-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			480	119	747	0	ENST00000376406.3:c.4409C>T	p.Thr1470Met	p.T1470M	ENST00000376406	NM_014641.2	1470	aCg/aTg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9776098	9776098	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754531708		P-0055176-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			549	131	866	0	ENST00000377346.4:c.562C>T	p.Arg188Trp	p.R188W	ENST00000377346	NM_005026.3	188	Cgg/Tgg																																																																															
FH	2271	MSKCC	GRCh37	1	241671991	241671991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055176-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			329	86	509	1	ENST00000366560.3:c.650C>T	p.Ala217Val	p.A217V	ENST00000366560	NM_000143.3	217	gCt/gTt																																																																															
ATM	472	MSKCC	GRCh37	11	108121661	108121661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055176-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			329	82	589	0	ENST00000278616.4:c.1469T>C	p.Ile490Thr	p.I490T	ENST00000278616	NM_000051.3	490	aTt/aCt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373908	118373908	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055176-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			199	46	393	0	ENST00000534358.1:c.7301A>G	p.Lys2434Arg	p.K2434R	ENST00000534358	NM_005933.3	2434	aAa/aGa																																																																															
POLE	5426	MSKCC	GRCh37	12	133219306	133219306	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs192908615		P-0055176-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			410	105	733	1	ENST00000320574.5:c.4738C>T	p.Arg1580Trp	p.R1580W	ENST00000320574	NM_006231.2	1580	Cgg/Tgg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748612	43748612	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055176-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			591	46	979	0	ENST00000382044.4:c.2194T>C	p.Ser732Pro	p.S732P	ENST00000382044	NM_001141980.1	732	Tcc/Ccc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023290	31023290	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055176-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			442	46	674	0	ENST00000375687.4:c.2775G>T	p.Gln925His	p.Q925H	ENST00000375687	NM_015338.5	925	caG/caT																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911209	29911210	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0055176-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			255	29	484	0	ENST00000376809.5:c.508_509del	p.Lys170ValfsTer6	p.K170Vfs*6	ENST00000376809	NM_002116.7	170	AAg/g																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020417	69020417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055176-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			482	28	671	1	ENST00000288368.4:c.2789G>A	p.Ser930Asn	p.S930N	ENST00000288368	NM_024870.2	930	aGc/aAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0055259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	47	710	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041720	47041720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0055259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	17	669	0	ENST00000329236.7:c.1711C>T	p.Gln571Ter	p.Q571*	ENST00000329236	NM_001204466.1	571	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0055259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	47	1189	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40861906	40861906	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	28	714	0	ENST00000428826.2:c.1451A>G	p.Asp484Gly	p.D484G	ENST00000428826		484	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112116524	112116524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0055259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	62	439	0	ENST00000257430.4:c.570del	p.Glu190AspfsTer15	p.E190Dfs*15	ENST00000257430	NM_000038.5	190	gAa/ga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974701	21974704	+	frameshift_variant	Frame_Shift_Del	DEL	ATTC	ATTC	-			P-0055259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	31	517	0	ENST00000304494.5:c.123_126del	p.Asn42ValfsTer10	p.N42Vfs*10	ENST00000304494	NM_000077.4	41	ccGAAT/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs397516439		P-0055262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	450	802	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
NCOA3	8202	MSKCC	GRCh37	20	46265177	46265177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	72	387	0	ENST00000371998.3:c.2047C>T	p.Arg683Trp	p.R683W	ENST00000371998		683	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0055262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	1904	651	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0055262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	222	670	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31388054	31388054	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	44	408	0	ENST00000328111.2:c.1855G>C	p.Glu619Gln	p.E619Q	ENST00000328111	NM_006892.3	619	Gag/Cag																																																																															
EP300	2033	MSKCC	GRCh37	22	41568560	41568560	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0055264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	103	564	0	ENST00000263253.7:c.4510T>G	p.Phe1504Val	p.F1504V	ENST00000263253	NM_001429.3	1504	Ttc/Gtc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439905	52439918	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTGGCTGTGTTA	CTCTGGCTGTGTTA	-			P-0055264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	54	559	0	ENST00000460680.1:c.794_807del	p.Val265AlafsTer14	p.V265Afs*14	ENST00000460680	NM_004656.3	265	gTAACACAGCCAGAG/g																																																																															
MGA	23269	MSKCC	GRCh37	15	42054344	42054344	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	64	387	0	ENST00000219905.7:c.7528G>C	p.Val2510Leu	p.V2510L	ENST00000219905	NM_001164273.1	2510	Gtc/Ctc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14014066	14014089	+	inframe_deletion	In_Frame_Del	DEL	TGCTGGAGTACGAGCGACAGCTGG	TGCTGGAGTACGAGCGACAGCTGG	-			P-0055281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	36	751	0	ENST00000311895.7:c.51_74del	p.Tyr18_Glu25del	p.Y18_E25del	ENST00000311895	NM_005236.2	15	cTGCTGGAGTACGAGCGACAGCTGGtg/ctg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993105	72993105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771899311		P-0055281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	408	912	0	ENST00000268489.5:c.940C>T	p.Arg314Trp	p.R314W	ENST00000268489	NM_006885.3	314	Cgg/Tgg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37665960	37665960	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0055281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	62	366	0	ENST00000447079.4:c.2612G>A	p.Gly871Glu	p.G871E	ENST00000447079	NM_015083.1	871	gGg/gAg																																																																															
SRC	6714	MSKCC	GRCh37	20	36024597	36024597	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0055281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	99	869	1	ENST00000358208.4:c.586A>T	p.Asn196Tyr	p.N196Y	ENST00000358208		196	Aac/Tac																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662326	117662326	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0055281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	148	654	0	ENST00000368508.3:c.5051T>A	p.Leu1684His	p.L1684H	ENST00000368508	NM_002944.2	1684	cTc/cAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508502	106508502	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs777578185		P-0055281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	46	443	0	ENST00000359195.3:c.496A>T	p.Ser166Cys	p.S166C	ENST00000359195	NM_002649.2	166	Agc/Tgc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040642	47040642	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	27	342	0	ENST00000329236.7:c.1043C>G	p.Ala348Gly	p.A348G	ENST00000329236	NM_001204466.1	348	gCc/gGc																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0055314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	8	134	0	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696449	47696449	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	61	447	0	ENST00000347630.2:c.374T>G	p.Phe125Cys	p.F125C	ENST00000347630	NM_001007230.1	125	tTt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112173831	112173831	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0055314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	38	292	0	ENST00000257430.4:c.2544del	p.Asp849IlefsTer12	p.D849Ifs*12	ENST00000257430	NM_000038.5	847	gAa/ga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	31	391	0	ENST00000361445.4:c.5930C>T	p.Thr1977Ile	p.T1977I	ENST00000361445	NM_004958.3	1977	aCa/aTa																																																																															
IRF4	3662	MSKCC	GRCh37	6	401520	401520	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751008894		P-0055314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	45	397	1	ENST00000380956.4:c.842C>T	p.Thr281Met	p.T281M	ENST00000380956	NM_001195286.1	281	aCg/aTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933400	39933400	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	61	299	0	ENST00000378444.4:c.1199del	p.Gly400AlafsTer42	p.G400Afs*42	ENST00000378444	NM_001123385.1	400	gGc/gc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98224149	98224149	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs531947455		P-0055314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	21	270	0	ENST00000331920.6:c.2692G>A	p.Asp898Asn	p.D898N	ENST00000331920	NM_000264.3	898	Gac/Aac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821341	72821341	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200494604		P-0055314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	30	320	1	ENST00000268489.5:c.10834G>A	p.Ala3612Thr	p.A3612T	ENST00000268489	NM_006885.3	3612	Gcc/Acc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12043919	12043919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	50	371	1	ENST00000396373.4:c.1298G>A	p.Arg433His	p.R433H	ENST00000396373	NM_001987.4	433	cGt/cAt																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128036920	128036920	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1034515602		P-0055314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	49	404	0	ENST00000285398.2:c.1559G>A	p.Arg520Gln	p.R520Q	ENST00000285398	NM_000122.1	520	cGg/cAg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31395624	31395624	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	62	607	0	ENST00000328111.2:c.2477G>T	p.Arg826Leu	p.R826L	ENST00000328111	NM_006892.3	826	cGc/cTc																																																																															
EP300	2033	MSKCC	GRCh37	22	41537092	41537092	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	23	303	0	ENST00000263253.7:c.1919T>C	p.Ile640Thr	p.I640T	ENST00000263253	NM_001429.3	640	aTc/aCc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382184	152382184	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	47	428	0	ENST00000206249.3:c.1294T>C	p.Ser432Pro	p.S432P	ENST00000206249	NM_000125.3	432	Tca/Cca																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0027959-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			89	57	600	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0027959-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			127	57	328	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
CDH1	999	MSKCC	GRCh37	16	68835596	68835596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587783047		P-0027959-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			162	69	421	1	ENST00000261769.5:c.187C>T	p.Arg63Ter	p.R63*	ENST00000261769	NM_004360.3	63	Cga/Tga																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435201	18435202	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027959-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			119	21	252	1	ENST00000266497.5:c.192dup	p.Val65CysfsTer16	p.V65Cfs*16	ENST00000266497		62	-/T																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573430	48573430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027959-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			49	21	151	0	ENST00000342988.3:c.14C>G	p.Ser5Cys	p.S5C	ENST00000342988	NM_005359.5	5	tCt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112177073	112177073	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027959-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			146	27	347	0	ENST00000257430.4:c.5782del	p.Gln1928ArgfsTer42	p.Q1928Rfs*42	ENST00000257430	NM_000038.5	1928	Cag/ag																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430247	181430247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027959-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			121	46	325	0	ENST00000325404.1:c.99C>A	p.Asn33Lys	p.N33K	ENST00000325404	NM_003106.3	33	aaC/aaA																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528109	157528110	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027959-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			89	88	503	0	ENST00000346085.5:c.5835dup	p.Ile1946HisfsTer9	p.I1946Hfs*9	ENST00000346085	NM_020732.3	1945	tgc/tgCc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715979	52715979	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786205227		P-0052035-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			378	115	569	0	ENST00000322088.6:c.544C>T	p.Arg182Trp	p.R182W	ENST00000322088	NM_014225.5	182	Cgg/Tgg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99149894	99149894	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368448330		P-0055078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	111	602	0	ENST00000074304.5:c.206C>T	p.Ala69Val	p.A69V	ENST00000074304	NM_001134224.1	69	gCg/gTg																																																																															
ATM	472	MSKCC	GRCh37	11	108160428	108160428	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1060501658		P-0055078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	29	427	0	ENST00000278616.4:c.4336G>T	p.Val1446Phe	p.V1446F	ENST00000278616	NM_000051.3	1446	Gtt/Ttt																																																																															
B2M	567	MSKCC	GRCh37	15	45003812	45003812	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0055078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	159	662	0	ENST00000558401.1:c.67+1G>C		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
RET	5979	MSKCC	GRCh37	10	43608407	43608407	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0055078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	67	1398	0	ENST00000355710.3:c.1755C>A	p.Cys585Ter	p.C585*	ENST00000355710	NM_020975.4	585	tgC/tgA																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683144	88683144	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0055078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	44	553	0	ENST00000372037.3:c.1354G>T	p.Glu452Ter	p.E452*	ENST00000372037	NM_004329.2	452	Gaa/Taa																																																																															
WT1	7490	MSKCC	GRCh37	11	32449549	32449549	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	265	1127	0	ENST00000332351.3:c.825C>G	p.Asp275Glu	p.D275E	ENST00000332351	NM_024426.4	275	gaC/gaG																																																																															
MEN1	4221	MSKCC	GRCh37	11	64574483	64574483	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0055078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	232	1031	0	ENST00000337652.1:c.927G>C	p.Lys309Asn	p.K309N	ENST00000337652	NM_130803.2	309	aaG/aaC																																																																															
ARID2	196528	MSKCC	GRCh37	12	46254732	46254732	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0055078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	31	304	2	ENST00000334344.6:c.4922A>G	p.Lys1641Arg	p.K1641R	ENST00000334344	NM_152641.2	1641	aAg/aGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427522	49427522	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	143	1018	1	ENST00000301067.7:c.10966C>A	p.Arg3656Ser	p.R3656S	ENST00000301067	NM_003482.3	3656	Cgc/Agc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427527	49427527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	213	1016	1	ENST00000301067.7:c.10961G>T	p.Gly3654Val	p.G3654V	ENST00000301067	NM_003482.3	3654	gGt/gTt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37872019	37872019	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	291	1072	0	ENST00000269571.5:c.1340G>T	p.Gly447Val	p.G447V	ENST00000269571		447	gGg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212029	36212029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	266	1165	1	ENST00000222270.7:c.1780G>T	p.Val594Phe	p.V594F	ENST00000222270	NM_014727.1	594	Gtt/Ttt																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22143014	22143014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	29	513	3	ENST00000215832.6:c.693G>T	p.Lys231Asn	p.K231N	ENST00000215832	NM_002745.4	231	aaG/aaT																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1941496	1941496	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0055078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	26	439	0	ENST00000382891.5:c.1872del	p.Glu625ArgfsTer38	p.E625Rfs*38	ENST00000382891	NM_133335.3	624	acT/ac																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515286	31515286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	52	773	0	ENST00000344624.3:c.1099G>A	p.Glu367Lys	p.E367K	ENST00000344624		367	Gaa/Aaa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876411	35876411	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0055078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	122	794	0	ENST00000303115.3:c.1203C>A	p.Tyr401Ter	p.Y401*	ENST00000303115	NM_002185.3	401	taC/taA																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287866	33287866	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0055078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	94	823	1	ENST00000374542.5:c.1387G>T	p.Glu463Ter	p.E463*	ENST00000374542	NM_001141970.1	463	Gag/Tag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528528	157528528	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0055078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	118	737	0	ENST00000346085.5:c.6253del	p.Thr2085ProfsTer14	p.T2085Pfs*14	ENST00000346085	NM_020732.3	2085	Acc/cc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508250	106508250	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0055078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	124	560	0	ENST00000359195.3:c.244A>T	p.Ser82Cys	p.S82C	ENST00000359195	NM_002649.2	82	Agc/Tgc																																																																															
ABL1	25	MSKCC	GRCh37	9	133760448	133760448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	192	997	1	ENST00000318560.5:c.2771G>T	p.Gly924Val	p.G924V	ENST00000318560	NM_005157.4	924	gGg/gTg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786019	135786019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	148	922	0	ENST00000298552.3:c.1202G>C	p.Cys401Ser	p.C401S	ENST00000298552	NM_001162426.1	401	tGt/tCt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223851	53223851	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1235	263	1278	0	ENST00000375401.3:c.3508G>T	p.Ala1170Ser	p.A1170S	ENST00000375401	NM_004187.3	1170	Gcc/Tcc																																																																															
ATRX	546	MSKCC	GRCh37	X	76938424	76938424	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0055078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	21	667	0	ENST00000373344.5:c.2324A>T	p.Asp775Val	p.D775V	ENST00000373344	NM_000489.3	775	gAt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0055111-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	630	1050	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2983971	2983971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055111-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			999	368	858	0	ENST00000396946.4:c.559C>T	p.Arg187Trp	p.R187W	ENST00000396946	NM_032415.4	187	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0055114-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			154	13	257	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055114-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			125	23	414	0	ENST00000269305.4:c.833C>A	p.Pro278His	p.P278H	ENST00000269305	NM_001126112.2	278	cCt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0055190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	109	758	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258744	115258744	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434596		P-0055190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	63	428	0	ENST00000369535.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000369535	NM_002524.4	13	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928065	178928076	+	inframe_deletion	In_Frame_Del	DEL	TACCTCATGGAT	TACCTCATGGAT	-			P-0055190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	53	543	0	ENST00000263967.3:c.1345_1356del	p.Pro449_Leu452del	p.P449_L452del	ENST00000263967	NM_006218.2	448	gTACCTCATGGATta/gta																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354371	354371	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	255	1172	0	ENST00000262320.3:c.1187T>C	p.Leu396Pro	p.L396P	ENST00000262320	NM_003502.3	396	cTg/cCg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910079	29911085	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	TCAGAGTCTCAGGCCCCGAAGGCGGTGTATGGATTGGGGAGTCCCAGCCTTGGGGATTCCCCAACTCCGCAGTTTCTTTTCTCCCTCTCCCAACCTACGTAGGGTCCTTCATCCTGGATACTCACGACGCGGACCCAGTTCTCACTCCCATTGGGTGTCGGGTTTCCAGAGAAGCCAATCAGTGTCGTCGCGGTCGCTGTTCTAAAGCCCGCACGCACCCACCGGGACTCAGATTCTCCCCAGACGCCGAGGATGGCCGTCATGGCGCCCCGAACCCTCCTCCTGCTACTCTCGGGGGCCCTGGCCCTGACCCAGACCTGGGCGGGTGAGTGCGGGGTCGGGAGGGAAACCGCCTCTGCGGGGAGAAGCAAGGGGCCCTCCTGGCGGGGGCGCAGGACCGGGGGAGCCGCGCCGGGACGAGGGTCGGGCAGGTCTCAGCCACTGCTCGCCCCCAGGCTCCCACTCCATGAGGTATTTCTTCACATCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAGGATGGAGCCGCGGGCGCCGTGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCAGGAGACACGGAATGTGAAGGCCCAGTCACAGACTGACCGAGTGGACCTGGGGACCCTGCGCGGCTACTACAACCAGAGCGAGGCCGGTGAGTGACCCCGGCCGGGGGCGCAGGTCAGGACCCCTCATCCCCCACGGACGGGCCAGGTCGCCCACAGTCTCCGGGTCCGAGATCCACCCCGAAGCCGCGGGACCCCGAGACCCTTGCCCCGGGAGAGGCCCAGGCGCCTTTACCCGGTTTCATTTTCAGTTTAGGCCAAAAATCCCCCCGGGTTGGTCGGGGCTGGGCGGGGCTCGGGGGACTGGGCTGACCGCGGGGTCGGGGCCAGGTTCTCACACCATCCAGATAATGTATGGCTGCGACGTGGGG	TCAGAGTCTCAGGCCCCGAAGGCGGTGTATGGATTGGGGAGTCCCAGCCTTGGGGATTCCCCAACTCCGCAGTTTCTTTTCTCCCTCTCCCAACCTACGTAGGGTCCTTCATCCTGGATACTCACGACGCGGACCCAGTTCTCACTCCCATTGGGTGTCGGGTTTCCAGAGAAGCCAATCAGTGTCGTCGCGGTCGCTGTTCTAAAGCCCGCACGCACCCACCGGGACTCAGATTCTCCCCAGACGCCGAGGATGGCCGTCATGGCGCCCCGAACCCTCCTCCTGCTACTCTCGGGGGCCCTGGCCCTGACCCAGACCTGGGCGGGTGAGTGCGGGGTCGGGAGGGAAACCGCCTCTGCGGGGAGAAGCAAGGGGCCCTCCTGGCGGGGGCGCAGGACCGGGGGAGCCGCGCCGGGACGAGGGTCGGGCAGGTCTCAGCCACTGCTCGCCCCCAGGCTCCCACTCCATGAGGTATTTCTTCACATCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAGGATGGAGCCGCGGGCGCCGTGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCAGGAGACACGGAATGTGAAGGCCCAGTCACAGACTGACCGAGTGGACCTGGGGACCCTGCGCGGCTACTACAACCAGAGCGAGGCCGGTGAGTGACCCCGGCCGGGGGCGCAGGTCAGGACCCCTCATCCCCCACGGACGGGCCAGGTCGCCCACAGTCTCCGGGTCCGAGATCCACCCCGAAGCCGCGGGACCCCGAGACCCTTGCCCCGGGAGAGGCCCAGGCGCCTTTACCCGGTTTCATTTTCAGTTTAGGCCAAAAATCCCCCCGGGTTGGTCGGGGCTGGGCGGGGCTCGGGGGACTGGGCTGACCGCGGGGTCGGGGCCAGGTTCTCACACCATCCAGATAATGTATGGCTGCGACGTGGGG	-			P-0055190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	67	56	0				ENST00000376809	NM_002116.7			1/3/08																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0055201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	135	342	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0055201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	722	708	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955165	17955165	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752820429		P-0055201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	258	970	1	ENST00000458235.1:c.62C>T	p.Thr21Met	p.T21M	ENST00000458235	NM_000215.3	21	aCg/aTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76872169	76872169	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	206	374	0	ENST00000373344.5:c.5478C>G	p.Phe1826Leu	p.F1826L	ENST00000373344	NM_000489.3	1826	ttC/ttG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0055206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	468	270	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0055206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	429	1048	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911234	32911234	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs759767392		P-0055206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	30	455	0	ENST00000380152.3:c.2742G>C	p.Leu914Phe	p.L914F	ENST00000380152		914	ttG/ttC																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2223463	2223463	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	24	511	0	ENST00000398665.3:c.3574G>A	p.Glu1192Lys	p.E1192K	ENST00000398665	NM_032482.2	1192	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0055221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	32	263	10	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs587782082		P-0055221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	135	357	21	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175720	112175720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0055221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	78	208	8	ENST00000257430.4:c.4429C>T	p.Gln1477Ter	p.Q1477*	ENST00000257430	NM_000038.5	1477	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584725	48584725	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0055221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	120	235	9	ENST00000342988.3:c.803G>A	p.Trp268Ter	p.W268*	ENST00000342988	NM_005359.5	268	tGg/tAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653852	89653854	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0055221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	40	242	5	ENST00000371953.3:c.155_157del	p.Asp52del	p.D52del	ENST00000371953	NM_000314.4	50	atTGAt/att																																																																															
APC	324	MSKCC	GRCh37	5	112173516	112173516	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0055221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	32	205	4	ENST00000257430.4:c.2226del	p.Met743CysfsTer18	p.M743Cfs*18	ENST00000257430	NM_000038.5	742	aTt/at																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851575	63851575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376632312		P-0055221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	148	344	16	ENST00000279873.7:c.2353C>T	p.Arg785Cys	p.R785C	ENST00000279873	NM_032199.2	785	Cgc/Tgc																																																																															
RB1	5925	MSKCC	GRCh37	13	48951052	48951052	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0055221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			4	30	117	4	ENST00000267163.4:c.1216-2A>C		p.X406_splice	ENST00000267163	NM_000321.2	406																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67591139	67591145	+	protein_altering_variant	In_Frame_Ins	INS	GACCAAT	GACCAAT	TGTAAGAAAG			P-0055221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	59	200	11	ENST00000274335.5:c.1732_1738delinsTGTAAGAAAG	p.Asp578_Tyr580delinsCysLysLysAsp	p.D578_Y580delinsCKKD	ENST00000274335		578	GACCAATac/TGTAAGAAAGac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0055229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	95	308	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348110	89348110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	70	601	0	ENST00000301030.4:c.4840C>T	p.Arg1614Trp	p.R1614W	ENST00000301030	NM_001256183.1	1614	Cgg/Tgg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81972448	81972448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	14	383	0	ENST00000359376.3:c.3241G>T	p.Ala1081Ser	p.A1081S	ENST00000359376	NM_002661.3	1081	Gcc/Tcc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463549	25463578	+	protein_altering_variant	In_Frame_Del	DEL	ATTGCAGGGACTGCCCCCAATCACCAGATC	ATTGCAGGGACTGCCCCCAATCACCAGATC	CTT			P-0055229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	32	486	1	ENST00000264709.3:c.2104_2133delinsAAG	p.Asp702_Asn711delinsLys	p.D702_N711delinsK	ENST00000264709	NM_175629.2	702	GATCTGGTGATTGGGGGCAGTCCCTGCAAT/AAG																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464516	25464516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	23	601	0	ENST00000264709.3:c.1997G>T	p.Cys666Phe	p.C666F	ENST00000264709	NM_175629.2	666	tGt/tTt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371694	225371697	+	frameshift_variant	Frame_Shift_Del	DEL	TAAA	TAAA	-	rs780143678		P-0055229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	38	439	0	ENST00000264414.4:c.907_910del	p.Phe303ValfsTer7	p.F303Vfs*7	ENST00000264414	NM_003590.4	303	TTTAgt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578196	7578196	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	20	494	0	ENST00000269305.4:c.653T>G	p.Val218Gly	p.V218G	ENST00000269305	NM_001126112.2	218	gTg/gGg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435361	110435361	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	37	295	0	ENST00000375856.3:c.3040T>C	p.Tyr1014His	p.Y1014H	ENST00000375856	NM_003749.2	1014	Tat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0055240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	21	299	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0055240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	12	513	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591837	48591837	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs867764109		P-0055240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	10	337	0	ENST00000342988.3:c.1000C>T	p.Gln334Ter	p.Q334*	ENST00000342988	NM_005359.5	334	Cag/Tag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0055167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	10	407	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0055182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	247	738	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	187	592	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092809	27092809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0055182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	222	559	0	ENST00000324856.7:c.2830C>T	p.Gln944Ter	p.Q944*	ENST00000324856	NM_006015.4	944	Cag/Tag																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012397	176012397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	98	283	0	ENST00000367669.3:c.1537G>A	p.Glu513Lys	p.E513K	ENST00000367669	NM_022457.5	513	Gag/Aag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176618933	176618933	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	203	429	0	ENST00000439151.2:c.976C>G	p.Leu326Val	p.L326V	ENST00000439151	NM_022455.4	326	Ctc/Gtc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178136	56178137	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0055182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	114	295	0	ENST00000399503.3:c.3110_3111del	p.Lys1037ArgfsTer4	p.K1037Rfs*4	ENST00000399503	NM_005921.1	1037	AAa/a																																																																															
SESN2	83667	MSKCC	GRCh37	1	28601483	28601483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	272	680	0	ENST00000253063.3:c.1168C>T	p.Arg390Cys	p.R390C	ENST00000253063	NM_031459.4	390	Cgc/Tgc																																																																															
CDH1	999	MSKCC	GRCh37	16	68853327	68853328	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0055182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	179	524	0	ENST00000261769.5:c.1711+1dup		p.-570fs	ENST00000261769	NM_004360.3	570	-/G																																																																															
NF1	4763	MSKCC	GRCh37	17	29496911	29496911	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0055182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	76	174	0	ENST00000358273.4:c.482T>A	p.Leu161Ter	p.L161*	ENST00000358273	NM_001042492.2	161	tTa/tAa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957519	1957519	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	280	703	0	ENST00000382891.5:c.2618G>T	p.Arg873Met	p.R873M	ENST00000382891	NM_133335.3	873	aGg/aTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179439	56179439	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	177	214	0	ENST00000399503.3:c.3752T>C	p.Leu1251Pro	p.L1251P	ENST00000399503	NM_005921.1	1251	cTt/cCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0055183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	204	897	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434650	99434650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	30	778	1	ENST00000268035.6:c.737C>T	p.Thr246Met	p.T246M	ENST00000268035	NM_000875.3	246	aCg/aTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47144868	47144868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	350	429	1	ENST00000409792.3:c.4885C>T	p.His1629Tyr	p.H1629Y	ENST00000409792	NM_014159.6	1629	Cac/Tac																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984370	201984370	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	237	772	1	ENST00000359651.3:c.1036del	p.Asp346MetfsTer101	p.D346Mfs*101	ENST00000359651		345	gtG/gt																																																																															
SUFU	51684	MSKCC	GRCh37	10	104386947	104386947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	68	239	0	ENST00000369902.3:c.1312G>A	p.Glu438Lys	p.E438K	ENST00000369902	NM_016169.3	438	Gag/Aag																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599300	28599300	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	147	1047	0	ENST00000253063.3:c.746C>G	p.Ser249Cys	p.S249C	ENST00000253063	NM_031459.4	249	tCt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	15	408	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	136	702	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	206	788	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	127	669	0	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	52	658	1	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099312	157099312	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	80	361	0	ENST00000346085.5:c.249G>C	p.Gln83His	p.Q83H	ENST00000346085	NM_020732.3	83	caG/caC																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298764	15298764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	83	753	2	ENST00000263388.2:c.1534G>A	p.Ala512Thr	p.A512T	ENST00000263388	NM_000435.2	512	Gcc/Acc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	83	462	2	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	113	707	0	ENST00000250448.2:c.655C>T	p.Arg219Cys	p.R219C	ENST00000250448	NM_004496.3	219	Cgc/Tgc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909698	50909698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	148	812	3	ENST00000440232.2:c.1418C>T	p.Thr473Met	p.T473M	ENST00000440232	NM_002691.3	473	aCg/aTg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430202	181430202	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	69	366	0	ENST00000325404.1:c.59del	p.Gly20AlafsTer26	p.G20Afs*26	ENST00000325404	NM_003106.3	18	tcG/tc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139794896	139794896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	182	542	0	ENST00000247668.2:c.290G>A	p.Arg97His	p.R97H	ENST00000247668	NM_021138.3	97	cGc/cAc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198274610	198274610	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139577219		P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	70	616	1	ENST00000335508.6:c.788C>T	p.Ala263Val	p.A263V	ENST00000335508	NM_012433.2	263	gCg/gTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857196	9857196	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs74935155		P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	55	536	1	ENST00000330684.3:c.4205G>A	p.Arg1402Gln	p.R1402Q	ENST00000330684	NM_001134407.1	1402	cGg/cAg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435342	110435342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	75	553	0	ENST00000375856.3:c.3059G>A	p.Arg1020His	p.R1020H	ENST00000375856	NM_003749.2	1020	cGt/cAt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138400852	138400852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	15	503	0	ENST00000289153.2:c.2461C>T	p.Arg821Cys	p.R821C	ENST00000289153	NM_006219.2	821	Cgc/Tgc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC	rs1361078163		P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	29	485	0	ENST00000234420.5:c.3260_3261dup	p.Phe1088ProfsTer3	p.F1088Pfs*3	ENST00000234420	NM_000179.2	1085	acc/aCCcc																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944983	31944983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	89	688	1	ENST00000340398.3:c.118C>T	p.Arg40Cys	p.R40C	ENST00000340398	NM_001013699.2	40	Cgc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256492	16256492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	70	599	0	ENST00000375759.3:c.3757G>A	p.Glu1253Lys	p.E1253K	ENST00000375759	NM_015001.2	1253	Gaa/Aaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859914	151859914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	25	441	0	ENST00000262189.6:c.10748C>T	p.Pro3583Leu	p.P3583L	ENST00000262189	NM_170606.2	3583	cCg/cTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220326	5220326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	73	631	0	ENST00000357368.4:c.3494G>A	p.Arg1165His	p.R1165H	ENST00000357368	NM_002850.3	1165	cGt/cAt																																																																															
NUP93	9688	MSKCC	GRCh37	16	56864492	56864492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	64	631	0	ENST00000308159.5:c.980G>A	p.Arg327His	p.R327H	ENST00000308159	NM_014669.4	327	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970950	21970951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs749588877		P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	124	769	1	ENST00000304494.5:c.407dup	p.Thr137HisfsTer5	p.T137Hfs*5	ENST00000304494	NM_000077.4	136	ggc/ggGc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524749	187524749	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372461501		P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	126	744	1	ENST00000441802.2:c.10931C>T	p.Ala3644Val	p.A3644V	ENST00000441802	NM_005245.3	3644	gCg/gTg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31483681	31483681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	19	342	0	ENST00000344624.3:c.2051G>A	p.Arg684His	p.R684H	ENST00000344624		684	cGt/cAt																																																																															
BCL6	604	MSKCC	GRCh37	3	187442757	187442757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	51	537	0	ENST00000232014.4:c.1949G>A	p.Arg650Gln	p.R650Q	ENST00000232014	NM_001130845.1	650	cGa/cAa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637034	176637034	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137993153		P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	42	664	0	ENST00000439151.2:c.1634C>T	p.Thr545Met	p.T545M	ENST00000439151	NM_022455.4	545	aCg/aTg																																																																															
PARP1	142	MSKCC	GRCh37	1	226568871	226568871	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	64	603	1	ENST00000366794.5:c.1198A>G	p.Lys400Glu	p.K400E	ENST00000366794	NM_001618.3	400	Aag/Gag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974763	21974764	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCCGC			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	37	285	0	ENST00000304494.5:c.58_63dup	p.Ala20_Ala21dup	p.A20_A21dup	ENST00000304494	NM_000077.4	20	-/GCGGCC																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145692	11145692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	61	784	2	ENST00000344626.4:c.4054G>A	p.Ala1352Thr	p.A1352T	ENST00000344626	NM_003072.3	1352	Gcg/Acg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087389	27087389	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	66	638	1	ENST00000324856.7:c.1963G>T	p.Gly655Ter	p.G655*	ENST00000324856	NM_006015.4	655	Gga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11291033	11291033	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200143518		P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	68	556	0	ENST00000361445.4:c.2728C>T	p.Arg910Trp	p.R910W	ENST00000361445	NM_004958.3	910	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023324	27023324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	90	246	1	ENST00000324856.7:c.430C>T	p.Pro144Ser	p.P144S	ENST00000324856	NM_006015.4	144	Ccg/Tcg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46736402	46736402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	71	550	0	ENST00000371975.4:c.1114G>A	p.Ala372Thr	p.A372T	ENST00000371975	NM_003579.3	372	Gca/Aca																																																																															
MEN1	4221	MSKCC	GRCh37	11	64571856	64571856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1221	151	830	0	ENST00000337652.1:c.1798C>T	p.Pro600Ser	p.P600S	ENST00000337652	NM_130803.2	600	Cct/Tct																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436980	110436980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	36	171	0	ENST00000375856.3:c.1421A>G	p.His474Arg	p.H474R	ENST00000375856	NM_003749.2	474	cAc/cGc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483976	88483976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	68	485	0	ENST00000360948.2:c.1594C>T	p.His532Tyr	p.H532Y	ENST00000360948	NM_001012338.2	532	Cac/Tac																																																																															
TSC2	7249	MSKCC	GRCh37	16	2120483	2120483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	89	735	0	ENST00000219476.3:c.1743C>A	p.Ser581Arg	p.S581R	ENST00000219476	NM_000548.3	581	agC/agA																																																																															
PALB2	79728	MSKCC	GRCh37	16	23640991	23640991	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	38	571	0	ENST00000261584.4:c.2484C>A	p.Cys828Ter	p.C828*	ENST00000261584	NM_024675.3	828	tgC/tgA																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56774077	56774077	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	34	473	0	ENST00000337432.4:c.428A>G	p.Gln143Arg	p.Q143R	ENST00000337432	NM_058216.2	143	cAg/cGg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231447	5231447	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	87	746	0	ENST00000357368.4:c.2029A>G	p.Thr677Ala	p.T677A	ENST00000357368	NM_002850.3	677	Acc/Gcc																																																																															
CIC	23152	MSKCC	GRCh37	19	42797129	42797129	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	133	809	0	ENST00000575354.2:c.3491T>C	p.Leu1164Ser	p.L1164S	ENST00000575354	NM_015125.3	1164	tTa/tCa																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62326512	62326512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	126	871	2	ENST00000508582.2:c.3509C>T	p.Pro1170Leu	p.P1170L	ENST00000508582		1170	cCg/cTg																																																																															
VHL	7428	MSKCC	GRCh37	3	10191521	10191521	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	198	530	0	ENST00000256474.2:c.514C>G	p.Pro172Ala	p.P172A	ENST00000256474	NM_000551.3	172	Cct/Gct																																																																															
RHOA	387	MSKCC	GRCh37	3	49413015	49413015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	67	568	0	ENST00000418115.1:c.8C>T	p.Ala3Val	p.A3V	ENST00000418115	NM_001664.2	3	gCc/gTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180040032	180040032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	118	855	2	ENST00000261937.6:c.3410C>T	p.Pro1137Leu	p.P1137L	ENST00000261937	NM_182925.4	1137	cCg/cTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946396	2946396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1197	121	902	0	ENST00000396946.4:c.3341C>T	p.Pro1114Leu	p.P1114L	ENST00000396946	NM_032415.4	1114	cCg/cTg																																																																															
ABL1	25	MSKCC	GRCh37	9	133759481	133759481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	158	685	1	ENST00000318560.5:c.1804G>A	p.Ala602Thr	p.A602T	ENST00000318560	NM_005157.4	602	Gcc/Acc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0055117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	153	416	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933732	39933732	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0055117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	44	525	0	ENST00000378444.4:c.867G>A	p.Trp289Ter	p.W289*	ENST00000378444	NM_001123385.1	289	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7573996	7574005	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTCTCGGA	AGCTCTCGGA	-			P-0055117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	57	605	0	ENST00000269305.4:c.1022_1031del	p.Phe341Ter	p.F341*	ENST00000269305	NM_001126112.2	341	tTCCGAGAGCTg/tg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520264	9520264	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0055117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	55	323	0	ENST00000353224.5:c.2005G>T	p.Val669Phe	p.V669F	ENST00000353224	NM_177990.2	669	Gtt/Ttt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651334	52651334	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0055117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	60	412	0	ENST00000394830.3:c.1762G>T	p.Glu588Ter	p.E588*	ENST00000394830	NM_018313.4	588	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579359	7579359	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587780066		P-0054117-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	441	629	0	ENST00000269305.4:c.328del	p.Arg110ValfsTer13	p.R110Vfs*13	ENST00000269305	NM_001126112.2	110	Cgt/gt																																																																															
CDH1	999	MSKCC	GRCh37	16	68857325	68857325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054117-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	115	347	0	ENST00000261769.5:c.1960C>T	p.Pro654Ser	p.P654S	ENST00000261769	NM_004360.3	654	Cca/Tca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0055026-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			361	122	557	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0055026-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			433	180	825	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133250250	133250250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055026-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	165	812	0	ENST00000320574.5:c.1270C>T	p.Leu424Phe	p.L424F	ENST00000320574	NM_006231.2	424	Ctc/Ttc																																																																															
CALR	811	MSKCC	GRCh37	19	13051211	13051211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200173883		P-0055026-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			495	51	644	0	ENST00000316448.5:c.647C>T	p.Pro216Leu	p.P216L	ENST00000316448	NM_004343.3	216	cCg/cTg																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225609	26225609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055026-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			451	52	706	0	ENST00000360408.1:c.227C>T	p.Ala76Val	p.A76V	ENST00000360408	NM_003532.2	76	gCt/gTt																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194904	29194904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055026-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			613	201	852	0	ENST00000240100.2:c.824G>A	p.Arg275His	p.R275H	ENST00000240100	NM_001394.6	275	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0055122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	297	705	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223289	36223289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	333	895	2	ENST00000222270.7:c.5839G>A	p.Val1947Ile	p.V1947I	ENST00000222270	NM_014727.1	1947	Gtc/Atc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859425	151859425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0055122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	158	389	0	ENST00000262189.6:c.11237del	p.Gly3746GlufsTer4	p.G3746Efs*4	ENST00000262189	NM_170606.2	3746	gGa/ga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859440	151859440	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	168	410	0	ENST00000262189.6:c.11222G>C	p.Gly3741Ala	p.G3741A	ENST00000262189	NM_170606.2	3741	gGt/gCt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0055138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	17	668	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	96	461	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720726	89720726	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs878853944		P-0055138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	20	186	2	ENST00000371953.3:c.877G>T	p.Gly293Ter	p.G293*	ENST00000371953	NM_000314.4	293	Gga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108114806	108114814	+	inframe_deletion	In_Frame_Del	DEL	AATTTTTGG	AATTTTTGG	-			P-0055138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	44	575	0	ENST00000278616.4:c.624_632del	p.Lys208_Asp211delinsAsn	p.K208_D211delinsN	ENST00000278616	NM_000051.3	208	aAATTTTTGGac/aac																																																																															
ATM	472	MSKCC	GRCh37	11	108163480	108163480	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0055138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	59	604	0	ENST00000278616.4:c.4571T>G	p.Leu1524Arg	p.L1524R	ENST00000278616	NM_000051.3	1524	cTt/cGt																																																																															
CD79A	973	MSKCC	GRCh37	19	42381426	42381426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	46	775	2	ENST00000221972.3:c.52C>T	p.Leu18Phe	p.L18F	ENST00000221972	NM_021601.3	18	Ctc/Ttc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910722	29910722	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0055138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	92	952	0	ENST00000376809.5:c.262A>T	p.Thr88Ser	p.T88S	ENST00000376809	NM_002116.7	88	Aca/Tca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0055146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	43	541	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562482	21562483	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGGCG	rs550642106		P-0055146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	10	132	1	ENST00000382592.4:c.1431_1436dup	p.Pro479_Ala480dup	p.P479_A480dup	ENST00000382592	NM_014572.2	479	ccg/ccCGCCCCg																																																																															
AC008738.1	0	MSKCC	GRCh37	19	33792755	33792757	+	splice_acceptor_variant,intron_variant,non_coding_transcript_variant	Splice_Site	DEL	GGC	GGC	-	rs781757114		P-0055146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	8	54	0	ENST00000425420.2:n.247-4_247-2del		p.X83_splice	ENST00000425420		83																																																																																
AKT3	10000	MSKCC	GRCh37	1	243716220	243716220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	15	495	0	ENST00000263826.5:c.974G>A	p.Arg325Gln	p.R325Q	ENST00000263826	NM_005465.4	325	cGa/cAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0055082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	167	651	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0055082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	161	514	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0055082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	293	640	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0055082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	141	417	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
APC	324	MSKCC	GRCh37	5	112174264	112174267	+	frameshift_variant	Frame_Shift_Del	DEL	AAGT	AAGT	-			P-0055082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	139	426	0	ENST00000257430.4:c.2977_2980del	p.Lys993PhefsTer11	p.K993Ffs*11	ENST00000257430	NM_000038.5	991	gaAAGT/ga																																																																															
DICER1	23405	MSKCC	GRCh37	14	95563003	95563003	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	155	464	0	ENST00000343455.3:c.4254G>C	p.Glu1418Asp	p.E1418D	ENST00000343455	NM_177438.2	1418	gaG/gaC																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829566	72829566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	276	701	2	ENST00000268489.5:c.7015C>T	p.Arg2339Cys	p.R2339C	ENST00000268489	NM_006885.3	2339	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0054974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	167	629	3	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	99	352	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5073770	5073770	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	8	362	1	ENST00000381652.3:c.1849G>T	p.Val617Phe	p.V617F	ENST00000381652	NM_004972.3	617	Gtc/Ttc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581304	48581305	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	134	466	0	ENST00000342988.3:c.609dup	p.Ser204IlefsTer2	p.S204Ifs*2	ENST00000342988	NM_005359.5	203	cca/ccAa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619805	1619805	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	195	713	0	ENST00000344749.5:c.1141A>G	p.Ser381Gly	p.S381G	ENST00000344749	NM_001136139.2	381	Agc/Ggc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047752-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	149	328	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047752-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	148	230	0				ENST00000310581	NM_198253.2																																																																																	
NF2	4771	MSKCC	GRCh37	22	30035169	30035169	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047752-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			542	172	468	0	ENST00000338641.4:c.331C>T	p.Gln111Ter	p.Q111*	ENST00000338641	NM_000268.3	111	Cag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041247	47041247	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047752-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			860	158	794	0	ENST00000329236.7:c.1441G>T	p.Glu481Ter	p.E481*	ENST00000329236	NM_001204466.1	481	Gaa/Taa																																																																															
MED12	9968	MSKCC	GRCh37	X	70361088	70361088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047752-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			451	129	369	1	ENST00000374080.3:c.6276G>T	p.Gln2092His	p.Q2092H	ENST00000374080		2092	caG/caT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504332	8504332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047752-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			681	82	485	0	ENST00000356435.5:c.1751G>T	p.Arg584Leu	p.R584L	ENST00000356435		584	cGt/cTt																																																																															
SDHB	6390	MSKCC	GRCh37	1	17380483	17380483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047752-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			919	136	704	1	ENST00000375499.3:c.32G>T	p.Arg11Leu	p.R11L	ENST00000375499	NM_003000.2	11	cGc/cTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041166	47041166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047752-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			707	130	711	0	ENST00000329236.7:c.1360C>T	p.Pro454Ser	p.P454S	ENST00000329236	NM_001204466.1	454	Ccc/Tcc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041256	47041256	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047752-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			825	139	760	0	ENST00000329236.7:c.1450A>C	p.Ser484Arg	p.S484R	ENST00000329236	NM_001204466.1	484	Agc/Cgc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123205006	123205006	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047752-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			299	67	212	0	ENST00000218089.9:c.2366C>A	p.Thr789Asn	p.T789N	ENST00000218089	NM_001042749.1	789	aCt/aAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0051410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			348	22	405	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0051410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			700	77	851	0	ENST00000269305.4:c.497C>G	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tGa																																																																															
VHL	7428	MSKCC	GRCh37	3	10183788	10183788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			646	73	725	3	ENST00000256474.2:c.257C>T	p.Pro86Leu	p.P86L	ENST00000256474	NM_000551.3	86	cCc/cTc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845885	156845885	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			829	89	948	0	ENST00000524377.1:c.1515C>G	p.Ile505Met	p.I505M	ENST00000524377	NM_002529.3	505	atC/atG																																																																															
APC	324	MSKCC	GRCh37	5	112176254	112176254	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			439	24	511	0	ENST00000257430.4:c.4963A>G	p.Thr1655Ala	p.T1655A	ENST00000257430	NM_000038.5	1655	Aca/Gca																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044906	47044907	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0051410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			367	72	428	0	ENST00000329236.7:c.2003dup	p.Glu670Ter	p.E670*	ENST00000329236	NM_001204466.1	666	-/G																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115269008	115269008	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0051410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			357	25	349	0	ENST00000438362.2:c.1603-1G>T		p.X535_splice	ENST00000438362	NM_001242891.1	535																																																																																
MEN1	4221	MSKCC	GRCh37	11	64571907	64571907	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			942	61	990	0	ENST00000337652.1:c.1747C>A	p.Gln583Lys	p.Q583K	ENST00000337652	NM_130803.2	583	Caa/Aaa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029002	14029002	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0051410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			214	14	277	1	ENST00000311895.7:c.1214-1G>T		p.X405_splice	ENST00000311895	NM_005236.2	405																																																																																
CDH1	999	MSKCC	GRCh37	16	68842333	68842333	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			481	27	492	0	ENST00000261769.5:c.394G>C	p.Val132Leu	p.V132L	ENST00000261769	NM_004360.3	132	Gtt/Ctt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830088	72830088	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			760	37	0	0	ENST00000268489.5:c.6493G>C	p.Asp2165His	p.D2165H	ENST00000268489	NM_006885.3	2165	Gac/Cac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830278	72830278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			371	10	0	0	ENST00000268489.5:c.6303G>A	p.Met2101Ile	p.M2101I	ENST00000268489	NM_006885.3	2101	atG/atA																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830823	72830823	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			780	36	0	0	ENST00000268489.5:c.5758G>C	p.Glu1920Gln	p.E1920Q	ENST00000268489	NM_006885.3	1920	Gag/Cag																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40441443	40441443	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			456	20	0	0	ENST00000345506.4:c.14T>G	p.Ile5Ser	p.I5S	ENST00000345506	NM_003152.3	5	aTc/aGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603113	48603113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			603	28	0	0	ENST00000342988.3:c.1414C>T	p.Pro472Ser	p.P472S	ENST00000342988	NM_005359.5	472	Cca/Tca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213367	36213368	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0051410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			703	71	873	2	ENST00000222270.7:c.2564_2565delinsTT	p.Arg855Leu	p.R855L	ENST00000222270	NM_014727.1	855	cGG/cTT																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467194	25467194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			440	32	601	0	ENST00000264709.3:c.1681G>A	p.Glu561Lys	p.E561K	ENST00000264709	NM_175629.2	561	Gag/Aag																																																																															
TOP1	7150	MSKCC	GRCh37	20	39721197	39721197	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			496	29	550	0	ENST00000361337.2:c.700C>G	p.Leu234Val	p.L234V	ENST00000361337	NM_003286.2	234	Ctt/Gtt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47158202	47158202	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0051410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			415	58	432	0	ENST00000409792.3:c.4497T>A	p.Cys1499Ter	p.C1499*	ENST00000409792	NM_014159.6	1499	tgT/tgA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467548	66467548	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			349	35	406	0	ENST00000273854.3:c.721G>C	p.Ala241Pro	p.A241P	ENST00000273854	NM_004439.5	241	Gct/Cct																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517826	187517826	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			374	49	403	0	ENST00000441802.2:c.12868G>T	p.Glu4290Ter	p.E4290*	ENST00000441802	NM_005245.3	4290	Gag/Tag																																																																															
NPM1	4869	MSKCC	GRCh37	5	170818324	170818324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			574	56	522	1	ENST00000296930.5:c.154G>A	p.Gly52Ser	p.G52S	ENST00000296930	NM_002520.6	52	Ggt/Agt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370846	55370846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			492	82	675	3	ENST00000297316.4:c.148G>A	p.Ala50Thr	p.A50T	ENST00000297316	NM_022454.3	50	Gcg/Acg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	124	337	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			59	28	34	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																																																															
MAX	4149	MSKCC	GRCh37	14	65560493	65560493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	171	430	0	ENST00000358664.4:c.104G>T	p.Arg35Leu	p.R35L	ENST00000358664	NM_002382.4	35	cGt/cTt																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665096	138665096	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs758370933		P-0054906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			227	76	186	0	ENST00000330315.3:c.469C>G	p.Pro157Ala	p.P157A	ENST00000330315	NM_023067.3	157	Ccc/Gcc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032542	47032542	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			179	242	319	0	ENST00000329236.7:c.217C>T	p.Gln73Ter	p.Q73*	ENST00000329236	NM_001204466.1	73	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49415622	49415622	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	143	353	1	ENST00000301067.7:c.16555G>T	p.Asp5519Tyr	p.D5519Y	ENST00000301067	NM_003482.3	5519	Gat/Tat																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246493817	246493817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	142	327	1	ENST00000388985.4:c.359C>T	p.Ser120Leu	p.S120L	ENST00000388985		120	tCa/tTa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992756	72992756	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			945	54	618	0	ENST00000268489.5:c.1289C>G	p.Ser430Cys	p.S430C	ENST00000268489	NM_006885.3	430	tCc/tGc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37673691	37673691	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0054906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			419	177	421	0	ENST00000447079.4:c.2847-2A>T		p.X949_splice	ENST00000447079	NM_015083.1	949																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0054912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	119	285	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391547	139391547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	157	787	0	ENST00000277541.6:c.6644C>T	p.Ser2215Leu	p.S2215L	ENST00000277541	NM_017617.3	2215	tCg/tTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68844175	68844175	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	144	588	1	ENST00000261769.5:c.763C>T	p.Gln255Ter	p.Q255*	ENST00000261769	NM_004360.3	255	Cag/Tag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061243	38061243	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	126	533	0	ENST00000250448.2:c.746A>T	p.Asp249Val	p.D249V	ENST00000250448	NM_004496.3	249	gAc/gTc																																																																															
LMO1	4004	MSKCC	GRCh37	11	8246269	8246269	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0054912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	45	319	0	ENST00000335790.3:c.366-1G>C		p.X122_splice	ENST00000335790	NM_002315.2	122																																																																																
MRE11A	4361	MSKCC	GRCh37	11	94201056	94201056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	35	237	0	ENST00000323929.3:c.1021G>A	p.Glu341Lys	p.E341K	ENST00000323929	NM_005591.3	341	Gaa/Aaa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18658231	18658231	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	92	390	0	ENST00000266497.5:c.3036G>C	p.Leu1012Phe	p.L1012F	ENST00000266497		1012	ttG/ttC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448693	49448693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	113	455	0	ENST00000301067.7:c.166C>A	p.Gln56Lys	p.Q56K	ENST00000301067	NM_003482.3	56	Cag/Aag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481623	56481623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	152	680	0	ENST00000267101.3:c.658G>C	p.Gly220Arg	p.G220R	ENST00000267101	NM_001982.3	220	Ggg/Cgg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347093	347093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	211	761	0	ENST00000262320.3:c.1918G>C	p.Glu640Gln	p.E640Q	ENST00000262320	NM_003502.3	640	Gaa/Caa																																																																															
NF1	4763	MSKCC	GRCh37	17	29557353	29557353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	55	224	0	ENST00000358273.4:c.3066G>A	p.Met1022Ile	p.M1022I	ENST00000358273	NM_001042492.2	1022	atG/atA																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943723	17943723	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0054912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	79	561	0	ENST00000458235.1:c.2366C>G	p.Ser789Ter	p.S789*	ENST00000458235	NM_000215.3	789	tCa/tGa																																																																															
ALK	238	MSKCC	GRCh37	2	29451912	29451912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	109	649	0	ENST00000389048.3:c.2653G>A	p.Asp885Asn	p.D885N	ENST00000389048	NM_004304.4	885	Gat/Aat																																																																															
ATR	545	MSKCC	GRCh37	3	142177845	142177845	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	57	281	0	ENST00000350721.4:c.7458G>C	p.Leu2486Phe	p.L2486F	ENST00000350721	NM_001184.3	2486	ttG/ttC																																																																															
BCL6	604	MSKCC	GRCh37	3	187447270	187447270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	253	636	0	ENST00000232014.4:c.923C>T	p.Ser308Leu	p.S308L	ENST00000232014	NM_001130845.1	308	tCg/tTg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751896	57751896	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	128	455	0	ENST00000274289.3:c.1341G>T	p.Met447Ile	p.M447I	ENST00000274289	NM_006622.3	447	atG/atT																																																																															
MYC	4609	MSKCC	GRCh37	8	128750960	128750960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	127	463	0	ENST00000377970.2:c.497C>T	p.Ser166Phe	p.S166F	ENST00000377970	NM_002467.4	166	tCc/tTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56174817	56174818	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	64	296	0	ENST00000399503.3:c.1977dup	p.Ala660SerfsTer37	p.A660Sfs*37	ENST00000399503	NM_005921.1	659	aga/agAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29554276	29554284	+	inframe_deletion	In_Frame_Del	DEL	GCGCATTGA	GCGCATTGA	-			P-0054972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	42	495	0	ENST00000358273.4:c.2294_2302del	p.Arg765_Glu767del	p.R765_E767del	ENST00000358273	NM_001042492.2	764	agGCGCATTGAg/agg																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495701	72495706	+	inframe_deletion	In_Frame_Del	DEL	CTGTTT	CTGTTT	-			P-0054972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	33	374	0	ENST00000477973.2:c.364_369del	p.Arg122_Asn123del	p.R122_N123del	ENST00000477973	NM_012234.5	122	agAAACAGt/agt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239893	98239893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	49	472	0	ENST00000331920.6:c.1439C>T	p.Ser480Leu	p.S480L	ENST00000331920	NM_000264.3	480	tCa/tTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	33	378	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0054976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	76	701	3	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356152	66356152	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370633345		P-0054976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	55	507	0	ENST00000273854.3:c.1345G>A	p.Asp449Asn	p.D449N	ENST00000273854	NM_004439.5	449	Gac/Aac																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10260571	10260571	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	26	511	0	ENST00000340748.4:c.2291C>A	p.Ser764Tyr	p.S764Y	ENST00000340748		764	tCt/tAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0054977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	116	538	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0054981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	250	682	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0054981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	115	421	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112173578	112173578	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	95	242	0	ENST00000257430.4:c.2287G>T	p.Glu763Ter	p.E763*	ENST00000257430	NM_000038.5	763	Gaa/Taa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296181	15296181	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144935367		P-0054981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	57	808	0	ENST00000263388.2:c.2183G>A	p.Arg728His	p.R728H	ENST00000263388	NM_000435.2	728	cGc/cAc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981823	201981824	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0054981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	130	769	0	ENST00000359651.3:c.535dup	p.Tyr179LeufsTer17	p.Y179Lfs*17	ENST00000359651		178	-/T																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67201897	67201897	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200633410		P-0054981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	214	671	1	ENST00000312629.5:c.1097C>T	p.Thr366Met	p.T366M	ENST00000312629	NM_003952.2	366	aCg/aTg																																																																															
ALK	238	MSKCC	GRCh37	2	29446368	29446368	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	107	745	0	ENST00000389048.3:c.3199C>A	p.Gln1067Lys	p.Q1067K	ENST00000389048	NM_004304.4	1067	Caa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	36	354	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	100	641	0	ENST00000171111.5:c.959G>T	p.Arg320Leu	p.R320L	ENST00000171111	NM_203500.1	320	cGg/cTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413085	139413085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	75	585	0	ENST00000277541.6:c.1057C>T	p.Arg353Cys	p.R353C	ENST00000277541	NM_017617.3	353	Cgt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108143257	108143257	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0054983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	23	244	0	ENST00000278616.4:c.3078-2A>T		p.X1026_splice	ENST00000278616	NM_000051.3	1026																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15272263	15272263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	73	609	1	ENST00000263388.2:c.6176G>A	p.Gly2059Glu	p.G2059E	ENST00000263388	NM_000435.2	2059	gGg/gAg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375471	15375471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	102	686	0	ENST00000263377.2:c.956G>T	p.Gly319Val	p.G319V	ENST00000263377	NM_058243.2	319	gGc/gTc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1961375	1961375	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	61	504	1	ENST00000382891.5:c.3163C>T	p.Gln1055Ter	p.Q1055*	ENST00000382891	NM_133335.3	1055	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0054984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	114	430	0	ENST00000346208.3:c.1300dup	p.His434ProfsTer73	p.H434Pfs*73	ENST00000346208		433	cac/caCc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180038427	180038427	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	174	730	0	ENST00000261937.6:c.3590G>C	p.Gly1197Ala	p.G1197A	ENST00000261937	NM_182925.4	1197	gGc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs770776262		P-0054986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	458	564	0	ENST00000269305.4:c.321C>A	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187519132	187519132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	241	301	0	ENST00000441802.2:c.12251G>T	p.Gly4084Val	p.G4084V	ENST00000441802	NM_005245.3	4084	gGt/gTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685187	89685323	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTCTTGATAGTATTAATGTAATTTCAAATGTTAGCTCATTTTTGTTAATGGTGGCTTTTTGTTTGTTTGTTTTGTTTTAAGGTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATCTGTAAGTATG	TTTTCTTGATAGTATTAATGTAATTTCAAATGTTAGCTCATTTTTGTTAATGGTGGCTTTTTGTTTGTTTGTTTTGTTTTAAGGTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATCTGTAAGTATG	-			P-0054986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	25	44	0	ENST00000371953.3:c.165-76_209+16del		p.X55_splice	ENST00000371953	NM_000314.4	55																																																																																
CARD11	84433	MSKCC	GRCh37	7	2959070	2959070	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	378	498	0	ENST00000396946.4:c.2446T>C	p.Cys816Arg	p.C816R	ENST00000396946	NM_032415.4	816	Tgc/Cgc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117869598	117869636	+	inframe_deletion	In_Frame_Del	DEL	GTGCTCTGTTCAGACTCTAATAGGAGGTTAGAAGTAGTA	GTGCTCTGTTCAGACTCTAATAGGAGGTTAGAAGTAGTA	-			P-0054986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	96	267	0	ENST00000297338.2:c.558_596del	p.Thr187_Thr199del	p.T187_T199del	ENST00000297338	NM_006265.2	186	acTACTACTTCTAACCTCCTATTAGAGTCTGAACAGAGCACc/acc																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152861553	152861567	+	inframe_deletion	In_Frame_Del	DEL	GGTCATAGGCGTCCA	GGTCATAGGCGTCCA	-			P-0054986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1457	137	530	0	ENST00000406277.2:c.185_199del	p.Leu62_Asp66del	p.L62_D66del	ENST00000406277	NM_152274.4	62	cTGGACGCCTATGACCct/cct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241677	55241677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	122	655	0	ENST00000275493.2:c.2125G>A	p.Glu709Lys	p.E709K	ENST00000275493	NM_005228.3	709	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0054995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	118	573	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	445	375	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0054996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	240	661	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
RB1	5925	MSKCC	GRCh37	13	49027164	49027165	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GACC			P-0054996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	99	390	0	ENST00000267163.4:c.1734_1737dup	p.Glu580ProfsTer6	p.E580Pfs*6	ENST00000267163	NM_000321.2	577	-/GACC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0054998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	134	462	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579388	7579389	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0054998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	192	802	0	ENST00000269305.4:c.298dup	p.Gln100ProfsTer49	p.Q100Pfs*49	ENST00000269305	NM_001126112.2	100	cag/cCag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057766	27057766	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	194	706	2	ENST00000324856.7:c.1474C>T	p.Gln492Ter	p.Q492*	ENST00000324856	NM_006015.4	492	Cag/Tag																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950689	38950689	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	103	323	0	ENST00000357387.3:c.3261C>G	p.Phe1087Leu	p.F1087L	ENST00000357387	NM_152756.3	1087	ttC/ttG																																																																															
CD276	80381	MSKCC	GRCh37	15	73994932	73994932	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0054998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	14	230	0	ENST00000318443.5:c.416C>T	p.Ala139Val	p.A139V	ENST00000318443	NM_001024736.1	139	gCc/gTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829526	72829526	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	146	610	0	ENST00000268489.5:c.7055A>G	p.Tyr2352Cys	p.Y2352C	ENST00000268489	NM_006885.3	2352	tAc/tGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0054999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	93	380	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0054999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	98	307	0	ENST00000257430.4:c.4128T>G	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taG																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942125	81942125	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	151	584	0	ENST00000359376.3:c.1667del	p.Gly556AlafsTer42	p.G556Afs*42	ENST00000359376	NM_002661.3	554	acG/ac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242494	55242494	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	90	329	0	ENST00000275493.2:c.2264C>A	p.Ala755Asp	p.A755D	ENST00000275493	NM_005228.3	755	gCc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0055000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	194	536	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112164646	112164646	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0055000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	53	244	0	ENST00000257430.4:c.1720G>T	p.Glu574Ter	p.E574*	ENST00000257430	NM_000038.5	574	Gaa/Taa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212570070	212570070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	189	394	0	ENST00000342788.4:c.1171G>A	p.Val391Ile	p.V391I	ENST00000342788	NM_005235.2	391	Gtc/Atc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0055000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	54	352	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245399	153245399	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0055000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	403	495	0	ENST00000281708.4:c.1792A>C	p.Asn598His	p.N598H	ENST00000281708	NM_033632.3	598	Aat/Cat																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576096	88576096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	109	653	0	ENST00000360948.2:c.1577C>T	p.Pro526Leu	p.P526L	ENST00000360948	NM_001012338.2	526	cCg/cTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039290	47039290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	127	649	1	ENST00000329236.7:c.682C>T	p.Arg228Cys	p.R228C	ENST00000329236	NM_001204466.1	228	Cgc/Tgc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967216	93967216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	108	308	0	ENST00000369303.4:c.2136G>T	p.Glu712Asp	p.E712D	ENST00000369303	NM_004440.3	712	gaG/gaT																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628105	90628105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	118	686	0	ENST00000330062.3:c.1214C>T	p.Thr405Met	p.T405M	ENST00000330062	NM_002168.2	405	aCg/aTg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436383	52436383	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	219	653	0	ENST00000460680.1:c.2111T>C	p.Val704Ala	p.V704A	ENST00000460680	NM_004656.3	704	gTc/gCc																																																																															
APC	324	MSKCC	GRCh37	5	112162804	112162804	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0055000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	57	319	0	ENST00000257430.4:c.1412del		p.X471_splice	ENST00000257430	NM_000038.5	471																																																																																
ERRFI1	54206	MSKCC	GRCh37	1	8073640	8073640	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	80	335	0	ENST00000377482.5:c.1019C>A	p.Ser340Tyr	p.S340Y	ENST00000377482	NM_018948.3	340	tCt/tAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440049	49440049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	41	613	0	ENST00000301067.7:c.4577G>A	p.Cys1526Tyr	p.C1526Y	ENST00000301067	NM_003482.3	1526	tGt/tAt																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216556	7216878	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTAGCATGTTCCATCTGCTTTTGCAAGGACAGGGCACCACCAGGCTGGAGGAAACCTAGGTGGGGAAGAGGGGCATGTGAGATGAGAATGAAACAGGGAGGGGAGGACCTGAGAGCTAGAGCTCCTGCATGGGATGTTATCACCTGTCTGAGTGGGCTGAAAGTGGCCATGCACAGCATAGGGCTGTGGCTGTGGCTGAGATAGGTACTGCACTGCAGGGAATGCCGAAGGAGCTGAGAAAGGAAAAGACAGAGCCATTAAAATCTTTTACTGAATGGCATTCCTCCTTTGACCTTGAGGAAGGCCAAGCCCCATCCCTCCTA	TTAGCATGTTCCATCTGCTTTTGCAAGGACAGGGCACCACCAGGCTGGAGGAAACCTAGGTGGGGAAGAGGGGCATGTGAGATGAGAATGAAACAGGGAGGGGAGGACCTGAGAGCTAGAGCTCCTGCATGGGATGTTATCACCTGTCTGAGTGGGCTGAAAGTGGCCATGCACAGCATAGGGCTGTGGCTGTGGCTGAGATAGGTACTGCACTGCAGGGAATGCCGAAGGAGCTGAGAAAGGAAAAGACAGAGCCATTAAAATCTTTTACTGAATGGCATTCCTCCTTTGACCTTGAGGAAGGCCAAGCCCCATCCCTCCTA	-			P-0055009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	114	460	0	ENST00000380728.2:c.634+9_779del		p.X212_splice	ENST00000380728		212																																																																																
TP53	7157	MSKCC	GRCh37	17	7576852	7576871	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CCTGAAGGGTGAAATATTCT	CCTGAAGGGTGAAATATTCT	-			P-0055009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	102	463	0	ENST00000269305.4:c.975_993+1del		p.X325_splice	ENST00000269305	NM_001126112.2	325																																																																																
CDK12	51755	MSKCC	GRCh37	17	37650918	37650937	+	frameshift_variant	Frame_Shift_Del	DEL	AAGATGCACTGGATTTCAAG	AAGATGCACTGGATTTCAAG	-			P-0055009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	59	403	0	ENST00000447079.4:c.2393_2412del	p.Asp798GlyfsTer10	p.D798Gfs*10	ENST00000447079	NM_015083.1	797	cAAGATGCACTGGATTTCAAG/c																																																																															
TOP1	7150	MSKCC	GRCh37	20	39729943	39729943	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	42	477	0	ENST00000361337.2:c.1258A>G	p.Ile420Val	p.I420V	ENST00000361337	NM_003286.2	420	Atc/Gtc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600329	10600329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	105	552	0	ENST00000171111.5:c.1526G>T	p.Gly509Val	p.G509V	ENST00000171111	NM_203500.1	509	gGg/gTg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519963		P-0055013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	29	272	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152027813	152027813	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0055013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	65	424	0	ENST00000262189.6:c.262C>T	p.Gln88Ter	p.Q88*	ENST00000262189	NM_170606.2	88	Caa/Taa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30103701	30103701	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	67	490	0	ENST00000331968.5:c.1237G>C	p.Val413Leu	p.V413L	ENST00000331968	NM_002742.2	413	Gtc/Ctc																																																																															
NF1	4763	MSKCC	GRCh37	17	29657441	29657441	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0055013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	66	473	0	ENST00000358273.4:c.5737A>T	p.Lys1913Ter	p.K1913*	ENST00000358273	NM_001042492.2	1913	Aag/Tag																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876556	35876556	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0055013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	53	379	1	ENST00000303115.3:c.1348G>T	p.Val450Phe	p.V450F	ENST00000303115	NM_002185.3	450	Gtc/Ttc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180039580	180039580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	145	660	0	ENST00000261937.6:c.3463G>T	p.Asp1155Tyr	p.D1155Y	ENST00000261937	NM_182925.4	1155	Gac/Tac																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80409438	80409439	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0055013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	37	304	1	ENST00000286548.4:c.675dup	p.Ile226TyrfsTer8	p.I226Yfs*8	ENST00000286548	NM_002072.3	225	-/T																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0055043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	103	398	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0055043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	72	303	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256709	19256709	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0055043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	67	576	0	ENST00000162023.5:c.1004A>C	p.Lys335Thr	p.K335T	ENST00000162023		335	aAg/aCg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391211	139391212	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0055043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	97	932	0	ENST00000277541.6:c.6979dup	p.Arg2327ProfsTer27	p.R2327Pfs*27	ENST00000277541	NM_017617.3	2327	cgg/cCgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087952	27087952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	104	545	1	ENST00000324856.7:c.2239G>A	p.Ala747Thr	p.A747T	ENST00000324856	NM_006015.4	747	Gcc/Acc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41239883	41239883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	65	262	0	ENST00000379561.5:c.467G>A	p.Arg156His	p.R156H	ENST00000379561	NM_002015.3	156	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584560	48584560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0055057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	81	450	0	ENST00000342988.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000342988	NM_005359.5	245	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0055057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	46	290	1	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0055057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	37	277	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0055057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	158	759	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0055057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	63	347	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849848	156849848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	103	723	1	ENST00000524377.1:c.2104C>T	p.Arg702Cys	p.R702C	ENST00000524377	NM_002529.3	702	Cgt/Tgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133257780	133257780	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0055057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	122	622	0	ENST00000320574.5:c.148T>G	p.Phe50Val	p.F50V	ENST00000320574	NM_006231.2	50	Ttt/Gtt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119101	70119102	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0055057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	56	415	0	ENST00000245479.2:c.675_676dup	p.Glu226AlafsTer28	p.E226Afs*28	ENST00000245479	NM_000346.3	225	ggc/gGCgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0055060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	718	909	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69136806	69136806	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0055060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	87	402	0	ENST00000288368.4:c.4720C>G	p.Gln1574Glu	p.Q1574E	ENST00000288368	NM_024870.2	1574	Cag/Gag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11199711	11199711	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	112	484	0	ENST00000361445.4:c.4877G>T	p.Cys1626Phe	p.C1626F	ENST00000361445	NM_004958.3	1626	tGc/tTc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65323389	65323389	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0055060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	123	629	0	ENST00000342505.4:c.1408A>T	p.Thr470Ser	p.T470S	ENST00000342505	NM_002227.2	470	Acc/Tcc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163325182	163325182	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	109	393	0	ENST00000271452.3:c.1318G>C	p.Ala440Pro	p.A440P	ENST00000271452	NM_145697.2	440	Gca/Cca																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625185	69625185	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	100	968	1	ENST00000334134.2:c.608G>T	p.Gly203Val	p.G203V	ENST00000334134	NM_005247.2	203	gGt/gTt																																																																															
ATM	472	MSKCC	GRCh37	11	108122590	108122590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	30	372	0	ENST00000278616.4:c.1634C>T	p.Ala545Val	p.A545V	ENST00000278616	NM_000051.3	545	gCa/gTa																																																																															
POLE	5426	MSKCC	GRCh37	12	133249290	133249290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0055060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	195	839	1	ENST00000320574.5:c.1609G>A	p.Glu537Lys	p.E537K	ENST00000320574	NM_006231.2	537	Gag/Aag																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133857	41133857	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	189	348	0	ENST00000379561.5:c.1771G>T	p.Gly591Cys	p.G591C	ENST00000379561	NM_002015.3	591	Ggc/Tgc																																																																															
AURKA	6790	MSKCC	GRCh37	20	54959330	54959330	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0055060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	149	381	0	ENST00000312783.6:c.370A>G	p.Lys124Glu	p.K124E	ENST00000312783	NM_198436.1	124	Aaa/Gaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177662	56177662	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	97	376	0	ENST00000399503.3:c.2635G>C	p.Gly879Arg	p.G879R	ENST00000399503	NM_005921.1	879	Ggt/Cgt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526706	106526706	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	104	434	0	ENST00000359195.3:c.2999A>G	p.Lys1000Arg	p.K1000R	ENST00000359195	NM_002649.2	1000	aAg/aGg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371994	55371994	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	76	241	0	ENST00000297316.4:c.684C>A	p.Asp228Glu	p.D228E	ENST00000297316	NM_022454.3	228	gaC/gaA																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239988	53239988	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	197	755	0	ENST00000375401.3:c.1453T>C	p.Ser485Pro	p.S485P	ENST00000375401	NM_004187.3	485	Tct/Cct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0055061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	168	314	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0055061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	292	671	2	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577505	7577505	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0055061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	275	648	1	ENST00000269305.4:c.776A>T	p.Asp259Val	p.D259V	ENST00000269305	NM_001126112.2	259	gAc/gTc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12043155	12043155	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0055061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	88	185	0	ENST00000353533.5:c.1041-1G>T		p.X347_splice	ENST00000353533	NM_003010.3	347																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21974782	21974782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138677674		P-0055061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	62	107	0	ENST00000304494.5:c.45G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tgG/tgA																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713826	30713826	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0055061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	307	636	0	ENST00000359013.4:c.1226A>G	p.Asn409Ser	p.N409S	ENST00000359013	NM_001024847.2	409	aAt/aGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0054137-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	27	413	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0054137-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			582	44	947	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589743	28589743	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054137-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			288	18	455	1	ENST00000241453.7:c.2637G>A	p.Trp879Ter	p.W879*	ENST00000241453	NM_004119.2	879	tgG/tgA																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914056	32914056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054137-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			189	11	530	0	ENST00000380152.3:c.5564C>T	p.Ser1855Leu	p.S1855L	ENST00000380152		1855	tCa/tTa																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945672	54945672	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054137-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			232	19	384	1	ENST00000312783.6:c.898A>G	p.Met300Val	p.M300V	ENST00000312783	NM_198436.1	300	Atg/Gtg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518024	8518024	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054137-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			342	28	517	0	ENST00000356435.5:c.1367C>A	p.Thr456Lys	p.T456K	ENST00000356435		456	aCa/aAa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061097	38061228	+	inframe_deletion	In_Frame_Del	DEL	AGGGGTCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGGCGGCGCAAGTAGCAGCCGTTCTCGA	AGGGGTCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGGCGGCGCAAGTAGCAGCCGTTCTCGA	-			P-0054809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	10	343	0	ENST00000250448.2:c.761_892del	p.Phe254_Pro297del	p.F254_P297del	ENST00000250448	NM_004496.3	254	tTCGAGAACGGCTGCTACTTGCGCCGCCAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGCGGCCCTGAGAGCCGCAAGGACCCCTct/tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	144	368	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1023835002		P-0054879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	10	591	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																															
APC	324	MSKCC	GRCh37	5	112175015	112175015	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	59	196	0	ENST00000257430.4:c.3724C>T	p.Gln1242Ter	p.Q1242*	ENST00000257430	NM_000038.5	1242	Cag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108180886	108180886	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0054879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	74	255	0	ENST00000278616.4:c.5763-1G>T		p.X1921_splice	ENST00000278616	NM_000051.3	1921																																																																																
BRCA2	675	MSKCC	GRCh37	13	32930742	32930742	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	96	454	0	ENST00000380152.3:c.7613A>T	p.Lys2538Ile	p.K2538I	ENST00000380152		2538	aAa/aTa																																																																															
APC	324	MSKCC	GRCh37	5	112175528	112175529	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGTAAG			P-0054879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	101	342	0	ENST00000257430.4:c.4241_4247dup	p.Ile1417LysfsTer8	p.I1417Kfs*8	ENST00000257430	NM_000038.5	1413	atg/aTGGTAAGtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054902-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			446	261	446	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42054431	42054431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054902-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	138	436	0	ENST00000219905.7:c.7615G>A	p.Asp2539Asn	p.D2539N	ENST00000219905	NM_001164273.1	2539	Gac/Aac																																																																															
STK11	6794	MSKCC	GRCh37	19	1207009	1207009	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054902-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			207	383	921	1	ENST00000326873.7:c.97G>T	p.Glu33Ter	p.E33*	ENST00000326873	NM_000455.4	33	Gag/Tag																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0054902-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			322	180	304	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119666144	119666144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054902-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			490	146	473	0	ENST00000316626.5:c.337C>T	p.Arg113Cys	p.R113C	ENST00000316626		113	Cgt/Tgt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38272400	38272400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054902-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	115	557	2	ENST00000425967.3:c.1967C>T	p.Ala656Val	p.A656V	ENST00000425967	NM_001174067.1	656	gCa/gTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521283	8521283	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054902-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			274	165	302	0	ENST00000356435.5:c.955G>T	p.Val319Phe	p.V319F	ENST00000356435		319	Gtc/Ttc																																																																															
FANCC	2176	MSKCC	GRCh37	9	98003014	98003014	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054902-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			516	120	419	0	ENST00000289081.3:c.262A>G	p.Lys88Glu	p.K88E	ENST00000289081	NM_000136.2	88	Aaa/Gaa																																																																															
ARAF	369	MSKCC	GRCh37	X	47424198	47424198	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0054902-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			834	131	657	1	ENST00000377045.4:c.203G>A	p.Arg68Gln	p.R68Q	ENST00000377045	NM_001654.4	68	cGa/cAa																																																																															
ARAF	369	MSKCC	GRCh37	X	47426794	47426794	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054902-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			525	436	663	0	ENST00000377045.4:c.1039C>A	p.Gln347Lys	p.Q347K	ENST00000377045	NM_001654.4	347	Cag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0054903-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			556	255	377	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0054903-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			666	622	672	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68982089	68982089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054903-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			645	131	709	0	ENST00000288368.4:c.1463G>A	p.Arg488His	p.R488H	ENST00000288368	NM_024870.2	488	cGt/cAt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508892	106508892	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054903-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			806	197	510	0	ENST00000359195.3:c.886T>A	p.Cys296Ser	p.C296S	ENST00000359195	NM_002649.2	296	Tgc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	85	398	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579310	7579310	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0054910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	191	688	0	ENST00000269305.4:c.375+2T>C		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
RECQL	5965	MSKCC	GRCh37	12	21624408	21624408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	87	577	0	ENST00000421138.2:c.1621G>A	p.Asp541Asn	p.D541N	ENST00000421138		541	Gat/Aat																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998940	11998940	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	113	365	0	ENST00000353533.5:c.442G>C	p.Asp148His	p.D148H	ENST00000353533	NM_003010.3	148	Gat/Cat																																																																															
ATRX	546	MSKCC	GRCh37	X	76939052	76939052	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	114	689	0	ENST00000373344.5:c.1696T>C	p.Ser566Pro	p.S566P	ENST00000373344	NM_000489.3	566	Tct/Cct																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	48	401	0	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	27	432	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	50	483	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	19	328	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	46	351	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	41	316	2	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200387	138200387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	93	616	0	ENST00000237289.4:c.1805C>T	p.Thr602Met	p.T602M	ENST00000237289	NM_001270507.1	602	aCg/aTg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	52	392	3	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	20	340	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	111	435	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131418	17131418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	89	615	0	ENST00000285071.4:c.34G>A	p.Glu12Lys	p.E12K	ENST00000285071	NM_144997.5	12	Gag/Aag																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110228	3110228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	79	694	1	ENST00000078429.4:c.218G>A	p.Arg73His	p.R73H	ENST00000078429	NM_002067.2	73	cGc/cAc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350470	15350470	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	71	675	0	ENST00000263377.2:c.3445C>T	p.Arg1149Trp	p.R1149W	ENST00000263377	NM_058243.2	1149	Cgg/Tgg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6043349	6043349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	40	268	0	ENST00000265849.7:c.325del	p.Glu109LysfsTer3	p.E109Kfs*3	ENST00000265849	NM_000535.5	109	Gaa/aa																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910626	29910626	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1203	114	1176	1	ENST00000376809.5:c.166C>T	p.Gln56Ter	p.Q56*	ENST00000376809	NM_002116.7	56	Cag/Tag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396482	139396482	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	107	792	1	ENST00000277541.6:c.5443del	p.Asp1815ThrfsTer72	p.D1815Tfs*72	ENST00000277541	NM_017617.3	1815	Gac/ac																																																																															
NF1	4763	MSKCC	GRCh37	17	29486050	29486050	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1438566555		P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	29	294	0	ENST00000358273.4:c.233del	p.Asn78IlefsTer7	p.N78Ifs*7	ENST00000358273	NM_001042492.2	76	gAa/ga																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396839	396839	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145608130		P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	82	684	0	ENST00000262320.3:c.187C>T	p.Arg63Cys	p.R63C	ENST00000262320	NM_003502.3	63	Cgc/Tgc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813674	50813674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	90	702	0	ENST00000398568.2:c.1228G>A	p.Glu410Lys	p.E410K	ENST00000398568	NM_001042412.1	410	Gag/Aag																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162868	38162868	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201879366		P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	126	601	0	ENST00000317025.8:c.2338C>T	p.Arg780Cys	p.R780C	ENST00000317025	NM_023034.1	780	Cgc/Tgc																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2096132	2096133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs763525759		P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	84	707	1	ENST00000219066.1:c.374dup	p.Val127GlyfsTer43	p.V127Gfs*43	ENST00000219066	NM_002528.5	125	cca/ccCa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022502	12022502	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1232497641		P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	102	785	5	ENST00000396373.4:c.613del	p.Leu205TrpfsTer4	p.L205Wfs*4	ENST00000396373	NM_001987.4	203	tCc/tc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434005	49434005	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	76	799	0	ENST00000301067.7:c.7548del	p.Asn2517IlefsTer26	p.N2517Ifs*26	ENST00000301067	NM_003482.3	2516	ccC/cc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231449	5231449	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	84	718	3	ENST00000357368.4:c.2027del	p.Pro676ArgfsTer134	p.P676Rfs*134	ENST00000357368	NM_002850.3	676	cCg/cg																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345760	152345760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	37	269	0	ENST00000359321.1:c.810del	p.Phe270LeufsTer27	p.F270Lfs*27	ENST00000359321	NM_005431.1	270	ttT/tt																																																																															
RET	5979	MSKCC	GRCh37	10	43608363	43608363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	97	993	0	ENST00000355710.3:c.1711G>A	p.Asp571Asn	p.D571N	ENST00000355710	NM_020975.4	571	Gat/Aat																																																																															
PARK2	5071	MSKCC	GRCh37	6	161807897	161807897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	50	374	1	ENST00000366898.1:c.1096C>T	p.Arg366Trp	p.R366W	ENST00000366898	NM_004562.2	366	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974701	21974701	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	44	447	0	ENST00000304494.5:c.126T>A	p.Asn42Lys	p.N42K	ENST00000304494	NM_000077.4	42	aaT/aaA																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993624	72993624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	86	712	0	ENST00000268489.5:c.421G>A	p.Ala141Thr	p.A141T	ENST00000268489	NM_006885.3	141	Gcg/Acg																																																																															
ACVR1	90	MSKCC	GRCh37	2	158637068	158637069	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-	rs141073095		P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	88	675	3	ENST00000263640.3:c.111_112del	p.Cys37Ter	p.C37*	ENST00000263640	NM_001105.4	37	tgTGaa/tgaa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38954947	38954947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	26	240	0	ENST00000357387.3:c.2626G>A	p.Val876Ile	p.V876I	ENST00000357387	NM_152756.3	876	Gtc/Atc																																																																															
POLE	5426	MSKCC	GRCh37	12	133234459	133234459	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs139603739		P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	46	419	1	ENST00000320574.5:c.3373C>T	p.Arg1125Ter	p.R1125*	ENST00000320574	NM_006231.2	1125	Cga/Tga																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24129410	24129410	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	52	335	0	ENST00000263121.7:c.54G>C	p.Gln18His	p.Q18H	ENST00000263121	NM_003073.3	18	caG/caC																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214894	36214894	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	92	730	2	ENST00000222270.7:c.3325del	p.Arg1109GlufsTer73	p.R1109Efs*73	ENST00000222270	NM_014727.1	1107	aCc/ac																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188524	11188524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	43	418	0	ENST00000361445.4:c.5897G>A	p.Arg1966Gln	p.R1966Q	ENST00000361445	NM_004958.3	1966	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023082	27023083	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	20	83	0	ENST00000324856.7:c.192dup	p.Pro65AlafsTer46	p.P65Afs*46	ENST00000324856	NM_006015.4	63	gtg/gtGg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094368	27094368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	90	522	0	ENST00000324856.7:c.3076C>T	p.Arg1026Cys	p.R1026C	ENST00000324856	NM_006015.4	1026	Cgt/Tgt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115279437	115279437	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	52	472	0	ENST00000438362.2:c.580G>T	p.Gly194Trp	p.G194W	ENST00000438362	NM_001242891.1	194	Ggg/Tgg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193110985	193110988	+	frameshift_variant	Frame_Shift_Del	DEL	TGTC	TGTC	-			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	17	168	0	ENST00000367435.3:c.520_523del	p.Ser174LysfsTer27	p.S174Kfs*27	ENST00000367435	NM_024529.4	173	tTGTCt/tt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100414	8100414	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	102	888	0	ENST00000346208.3:c.388C>A	p.Leu130Ile	p.L130I	ENST00000346208		130	Ctc/Atc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8105982	8105982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	70	504	0	ENST00000346208.3:c.802G>A	p.Ala268Thr	p.A268T	ENST00000346208		268	Gca/Aca																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136976	64136976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	65	564	2	ENST00000334205.4:c.1487G>A	p.Arg496His	p.R496H	ENST00000334205	NM_003942.2	496	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108164132	108164134	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	27	262	0	ENST00000278616.4:c.4708_4710del	p.Val1570del	p.V1570del	ENST00000278616	NM_000051.3	1568	caTGTt/cat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914176	32914176	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	33	409	0	ENST00000380152.3:c.5684A>G	p.Glu1895Gly	p.E1895G	ENST00000380152		1895	gAg/gGg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73350086	73350086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	32	331	0	ENST00000377767.4:c.799G>A	p.Gly267Ser	p.G267S	ENST00000377767	NM_014953.3	267	Ggc/Agc																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68934892	68934892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	42	369	1	ENST00000487270.1:c.961C>A	p.Leu321Ile	p.L321I	ENST00000487270	NM_133509.3	321	Ctt/Att																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99491883	99491883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	93	636	0	ENST00000268035.6:c.3668G>A	p.Arg1223His	p.R1223H	ENST00000268035	NM_000875.3	1223	cGc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3823883	3823883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	87	698	1	ENST00000262367.5:c.2332G>A	p.Ala778Thr	p.A778T	ENST00000262367	NM_004380.2	778	Gca/Aca																																																																															
CYLD	1540	MSKCC	GRCh37	16	50815245	50815245	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	73	552	0	ENST00000398568.2:c.1598T>C	p.Leu533Pro	p.L533P	ENST00000398568	NM_001042412.1	533	cTg/cCg																																																																															
CBFB	865	MSKCC	GRCh37	16	67116197	67116197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	64	478	1	ENST00000412916.2:c.481C>T	p.Arg161Trp	p.R161W	ENST00000412916		161	Cgg/Tgg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81927318	81927318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	106	691	1	ENST00000359376.3:c.991C>T	p.Leu331Phe	p.L331F	ENST00000359376	NM_002661.3	331	Ctt/Ttt																																																																															
NF1	4763	MSKCC	GRCh37	17	29486095	29486097	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	27	300	0	ENST00000358273.4:c.274_276del	p.Lys92del	p.K92del	ENST00000358273	NM_001042492.2	91	gAAAaa/gaa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657619	37657619	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	60	523	0	ENST00000447079.4:c.2536G>T	p.Gly846Ter	p.G846*	ENST00000447079	NM_015083.1	846	Gga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119060	70119060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	45	487	0	ENST00000245479.2:c.632C>T	p.Ser211Leu	p.S211L	ENST00000245479	NM_000346.3	211	tCg/tTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223041	5223041	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	77	676	0	ENST00000357368.4:c.2762T>G	p.Leu921Arg	p.L921R	ENST00000357368	NM_002850.3	921	cTg/cGg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355152	15355152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	102	905	1	ENST00000263377.2:c.2471C>T	p.Thr824Ile	p.T824I	ENST00000263377	NM_058243.2	824	aCc/aTc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17951053	17951053	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	84	602	0	ENST00000458235.1:c.1240A>C	p.Thr414Pro	p.T414P	ENST00000458235	NM_000215.3	414	Act/Cct																																																																															
ERF	2077	MSKCC	GRCh37	19	42753378	42753378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	105	906	0	ENST00000222329.4:c.886G>A	p.Gly296Ser	p.G296S	ENST00000222329	NM_006494.2	296	Ggc/Agc																																																																															
EP300	2033	MSKCC	GRCh37	22	41573120	41573120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	84	877	3	ENST00000263253.7:c.5405C>T	p.Pro1802Leu	p.P1802L	ENST00000263253	NM_001429.3	1802	cCg/cTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30648377	30648377	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	52	391	0	ENST00000359013.4:c.2T>C	p.Met1?	p.M1?	ENST00000359013	NM_001024847.2	1	aTg/aCg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71050173	71050173	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	29	347	0	ENST00000318789.4:c.1012A>T	p.Thr338Ser	p.T338S	ENST00000318789	NM_032682.5	338	Aca/Tca																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664799	138664799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	51	158	0	ENST00000330315.3:c.766G>A	p.Gly256Arg	p.G256R	ENST00000330315	NM_023067.3	256	Ggg/Agg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129992	55129992	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	82	621	0	ENST00000257290.5:c.526C>T	p.Gln176Ter	p.Q176*	ENST00000257290	NM_006206.4	176	Cag/Tag																																																																															
TET2	54790	MSKCC	GRCh37	4	106155173	106155173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	61	371	0	ENST00000380013.4:c.74G>A	p.Cys25Tyr	p.C25Y	ENST00000380013	NM_001127208.2	25	tGc/tAc																																																																															
TET2	54790	MSKCC	GRCh37	4	106156735	106156735	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	42	413	0	ENST00000380013.4:c.1636A>G	p.Lys546Glu	p.K546E	ENST00000380013	NM_001127208.2	546	Aag/Gag																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512331	149512331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	81	552	0	ENST00000261799.4:c.1109G>A	p.Arg370His	p.R370H	ENST00000261799	NM_002609.3	370	cGc/cAc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517585	176517585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	108	896	1	ENST00000292408.4:c.286G>A	p.Ala96Thr	p.A96T	ENST00000292408	NM_213647.1	96	Gct/Act																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323221	31323223	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	73	720	0	ENST00000412585.2:c.766_768del	p.Glu256del	p.E256del	ENST00000412585	NM_005514.6	256	GAG/-																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874474	151874474	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	39	375	0	ENST00000262189.6:c.8064del	p.Lys2688AsnfsTer9	p.K2688Nfs*9	ENST00000262189	NM_170606.2	2688	aaA/aa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285555	38285555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	76	589	2	ENST00000425967.3:c.598C>T	p.Pro200Ser	p.P200S	ENST00000425967	NM_001174067.1	200	Ccg/Tcg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69039625	69039625	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	39	421	0	ENST00000288368.4:c.3737G>T	p.Arg1246Met	p.R1246M	ENST00000288368	NM_024870.2	1246	aGg/aTg																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006081	22006081	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202221094		P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	149	673	0	ENST00000276925.6:c.322G>A	p.Val108Met	p.V108M	ENST00000276925	NM_004936.3	108	Gtg/Atg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044874	47044874	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	90	817	0	ENST00000329236.7:c.1969del	p.Glu657ArgfsTer67	p.E657Rfs*67	ENST00000329236	NM_001204466.1	656	Ggg/gg																																																																															
ARAF	369	MSKCC	GRCh37	X	47430356	47430356	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143723676		P-0054929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	68	816	0	ENST00000377045.4:c.1631G>A	p.Arg544His	p.R544H	ENST00000377045	NM_001654.4	544	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0054938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	187	841	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931589		P-0054938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	91	545	1	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36989307	36989307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	126	882	0	ENST00000354822.5:c.28C>T	p.Arg10Trp	p.R10W	ENST00000354822	NM_001079668.2	10	Cgg/Tgg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277892	41277892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	96	585	1	ENST00000349496.5:c.1856G>A	p.Cys619Tyr	p.C619Y	ENST00000349496	NM_001904.3	619	tGt/tAt																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797254	32797254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	223	1054	2	ENST00000374899.4:c.1855C>T	p.Arg619Trp	p.R619W	ENST00000374899	NM_018833.2	619	Cgg/Tgg																																																																															
WT1	7490	MSKCC	GRCh37	11	32456506	32456506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	26	132	0	ENST00000332351.3:c.386C>T	p.Pro129Leu	p.P129L	ENST00000332351	NM_024426.4	129	cCg/cTg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56488237	56488237	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	166	800	0	ENST00000267101.3:c.1756G>T	p.Val586Leu	p.V586L	ENST00000267101	NM_001982.3	586	Gtg/Ttg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351496	89351496	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	181	1033	0	ENST00000301030.4:c.1454C>A	p.Ser485Tyr	p.S485Y	ENST00000301030	NM_001256183.1	485	tCc/tAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0054940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	55	443	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0054940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	201	453	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	238	803	3	ENST00000269305.4:c.400T>C	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	Ttt/Ctt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120225	70120226	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0054940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	411	650	9	ENST00000245479.2:c.1228dup	p.Gln410ProfsTer168	p.Q410Pfs*168	ENST00000245479	NM_000346.3	409	-/C																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981815	101981815	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	155	585	1	ENST00000282441.5:c.236A>G	p.Asn79Ser	p.N79S	ENST00000282441	NM_001130145.2	79	aAc/aGc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266026	41266238	+	inframe_deletion	In_Frame_Del	DEL	TGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAG	TGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAG	-			P-0054940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	17	357	0	ENST00000349496.5:c.24_236del	p.Met8_Val79delinsIle	p.M8_V79delinsI	ENST00000349496	NM_001904.3	8	aTGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGta/ata																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	36	477	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0054942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	72	739	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
TGFBR2	7048	MSKCC	GRCh37	3	30732948	30732948	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	47	522	0	ENST00000359013.4:c.1636T>C	p.Trp546Arg	p.W546R	ENST00000359013	NM_001024847.2	546	Tgg/Cgg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52662921	52662921	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	56	430	0	ENST00000394830.3:c.1432C>T	p.Gln478Ter	p.Q478*	ENST00000394830	NM_018313.4	478	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0054656-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	30	824	1	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																															
BRAF	673	MSKCC	GRCh37	7	140453095	140453095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	83	434	0	ENST00000288602.6:c.1840T>C	p.Ser614Pro	p.S614P	ENST00000288602	NM_004333.4	614	Tct/Cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7573984	7573984	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0054865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	391	938	0	ENST00000269305.4:c.1043T>A	p.Leu348Ter	p.L348*	ENST00000269305	NM_001126112.2	348	tTg/tAg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376175	118376175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	91	622	1	ENST00000534358.1:c.9568G>A	p.Gly3190Arg	p.G3190R	ENST00000534358	NM_005933.3	3190	Ggg/Agg																																																																															
RB1	5925	MSKCC	GRCh37	13	49037868	49037872	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TTATG	TTATG	-			P-0054865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	33	283	0	ENST00000267163.4:c.2108_2112del	p.Ile703AsnfsTer16	p.I703Nfs*16	ENST00000267163	NM_000321.2	703	aTTATG/a																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11118682	11118688	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGCGG	CGCGCGG	-			P-0054865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	293	830	0	ENST00000344626.4:c.2107_2113del	p.Ala703ThrfsTer69	p.A703Tfs*69	ENST00000344626	NM_003072.3	702	gaCGCGCGG/ga																																																																															
TERT	7015	MSKCC	GRCh37	5	1294085	1294085	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	308	1206	0	ENST00000310581.5:c.916G>T	p.Gly306Cys	p.G306C	ENST00000310581	NM_198253.2	306	Ggc/Tgc																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839858	27839858	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	271	910	0	ENST00000328488.2:c.236T>A	p.Phe79Tyr	p.F79Y	ENST00000328488	NM_003533.2	79	tTt/tAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69009257	69009257	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	65	433	0	ENST00000288368.4:c.2374A>T	p.Ile792Phe	p.I792F	ENST00000288368	NM_024870.2	792	Att/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0054867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	376	1085	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346977	73346977	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0054867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	172	247	0	ENST00000377767.4:c.1240G>C	p.Gly414Arg	p.G414R	ENST00000377767	NM_014953.3	414	Gga/Cga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424405	49424405	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0054867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	132	781	0	ENST00000301067.7:c.13818C>G	p.Tyr4606Ter	p.Y4606*	ENST00000301067	NM_003482.3	4606	taC/taG																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444308	50444308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	67	384	0	ENST00000331340.3:c.238G>A	p.Glu80Lys	p.E80K	ENST00000331340	NM_006060.4	80	Gag/Aag																																																																															
CBL	867	MSKCC	GRCh37	11	119142576	119142576	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	142	358	0	ENST00000264033.4:c.575A>G	p.Lys192Arg	p.K192R	ENST00000264033	NM_005188.3	192	aAa/aGa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448380	49448380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	165	869	1	ENST00000301067.7:c.331C>T	p.Pro111Ser	p.P111S	ENST00000301067	NM_003482.3	111	Ccc/Tcc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103528188	103528188	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0054867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	245	419	0	ENST00000355739.4:c.3496A>T	p.Arg1166Ter	p.R1166*	ENST00000355739	NM_000123.3	1166	Aga/Tga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060755	38060756	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	AT			P-0054867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1152	206	1040	2	ENST00000250448.2:c.1233_1234delinsAT	p.Gln412Ter	p.Q412*	ENST00000250448	NM_004496.3	411	caGCag/caATag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440000	56440000	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	150	737	0	ENST00000407977.2:c.592G>C	p.Asp198His	p.D198H	ENST00000407977		198	Gat/Cat																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469956	25469956	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	184	764	0	ENST00000264709.3:c.1086G>C	p.Gln362His	p.Q362H	ENST00000264709	NM_175629.2	362	caG/caC																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295795	212295795	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	203	588	0	ENST00000342788.4:c.2518G>C	p.Val840Leu	p.V840L	ENST00000342788	NM_005235.2	840	Gtt/Ctt																																																																															
BCL6	604	MSKCC	GRCh37	3	187447145	187447145	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	321	793	1	ENST00000232014.4:c.1048A>G	p.Ser350Gly	p.S350G	ENST00000232014	NM_001130845.1	350	Agt/Ggt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047211	180047211	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	342	965	0	ENST00000261937.6:c.2504C>A	p.Ala835Asp	p.A835D	ENST00000261937	NM_182925.4	835	gCc/gAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048671	180048671	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	160	988	0	ENST00000261937.6:c.1891del	p.Ala631ArgfsTer8	p.A631Rfs*8	ENST00000261937	NM_182925.4	631	Gcg/cg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968283	2968283	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	313	848	3	ENST00000396946.4:c.1703C>G	p.Pro568Arg	p.P568R	ENST00000396946	NM_032415.4	568	cCg/cGg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128434716	128434716	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	278	723	0	ENST00000265960.3:c.138G>T	p.Met46Ile	p.M46I	ENST00000265960	NM_001006617.1	46	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0054870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	440	767	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0054870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	185	735	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	251	504	0	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT																																																																															
ALK	238	MSKCC	GRCh37	2	29519767	29519767	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	70	578	0	ENST00000389048.3:c.1804G>C	p.Asp602His	p.D602H	ENST00000389048	NM_004304.4	602	Gat/Cat																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865164	57865164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	239	992	1	ENST00000228682.2:c.2641C>A	p.Leu881Met	p.L881M	ENST00000228682	NM_005269.2	881	Ctg/Atg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101450	27101450	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	148	772	0	ENST00000324856.7:c.4732A>T	p.Met1578Leu	p.M1578L	ENST00000324856	NM_006015.4	1578	Atg/Ttg																																																																															
PGR	5241	MSKCC	GRCh37	11	100922168	100922168	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	97	391	0	ENST00000325455.5:c.2344C>A	p.Leu782Ile	p.L782I	ENST00000325455	NM_001202474.3	782	Cta/Ata																																																																															
FLT1	2321	MSKCC	GRCh37	13	29002038	29002038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	93	420	0	ENST00000282397.4:c.1127C>A	p.Ala376Glu	p.A376E	ENST00000282397	NM_002019.4	376	gCg/gAg																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40678649	40678649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	147	591	0	ENST00000249776.8:c.391C>T	p.Pro131Ser	p.P131S	ENST00000249776	NM_033286.3	131	Cca/Tca																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912798	50912798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	298	1139	1	ENST00000440232.2:c.2029G>A	p.Glu677Lys	p.E677K	ENST00000440232	NM_002691.3	677	Gag/Aag																																																																															
PMS1	5378	MSKCC	GRCh37	2	190738237	190738237	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	48	251	0	ENST00000441310.2:c.2489A>C	p.Glu830Ala	p.E830A	ENST00000441310	NM_000534.4	830	gAa/gCa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660337	227660337	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	460	716	0	ENST00000305123.5:c.3118G>T	p.Ala1040Ser	p.A1040S	ENST00000305123	NM_005544.2	1040	Gcc/Tcc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294246	1294246	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	470	870	0	ENST00000310581.5:c.755G>T	p.Gly252Val	p.G252V	ENST00000310581	NM_198253.2	252	gGg/gTg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450324	50450324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	563	816	1	ENST00000331340.3:c.508G>T	p.Glu170Ter	p.E170*	ENST00000331340	NM_006060.4	170	Gag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81335705	81335705	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	109	418	0	ENST00000222390.5:c.1655A>C	p.Asp552Ala	p.D552A	ENST00000222390	NM_000601.4	552	gAt/gCt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371797	55371797	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	156	199	0	ENST00000297316.4:c.487C>A	p.Gln163Lys	p.Q163K	ENST00000297316	NM_022454.3	163	Cag/Aag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69050670	69050670	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	67	477	0	ENST00000288368.4:c.4005A>T	p.Leu1335Phe	p.L1335F	ENST00000288368	NM_024870.2	1335	ttA/ttT																																																																															
NF1	4763	MSKCC	GRCh37	17	29562701	29562702	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	G			P-0054870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	421	563	0	ENST00000358273.4:c.3781_3782delinsG	p.Phe1261ValfsTer5	p.F1261Vfs*5	ENST00000358273	NM_001042492.2	1261	TTt/Gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	206	1080	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0054873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	44	451	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0054873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	185	1060	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485136	57485387	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGTGTATGGCTTCCACTCTTGCTGGCTGTTCATTGCGGTGGTTCTTTTTCAAACGGTCAGGCTGAAAACCCCCATCCCCCTCCCACCACCAAACCATAAAGGATCTATAAGAGAAGCAAGAAAAACGCACTCCCACTAATTCTCATATGGAAAAATCAGGGTTTTGAAGACTTCAGGAGCTACAGAGATGCTAGCACCCCAGCTCTGCTTGAATTTTAAATTACATTAATATGTATTCCCTTTTTATATA	GGTGTGTATGGCTTCCACTCTTGCTGGCTGTTCATTGCGGTGGTTCTTTTTCAAACGGTCAGGCTGAAAACCCCCATCCCCCTCCCACCACCAAACCATAAAGGATCTATAAGAGAAGCAAGAAAAACGCACTCCCACTAATTCTCATATGGAAAAATCAGGGTTTTGAAGACTTCAGGAGCTACAGAGATGCTAGCACCCCAGCTCTGCTTGAATTTTAAATTACATTAATATGTATTCCCTTTTTATATA	-			P-0054873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	46	466	2	ENST00000371085.3:c.970+1_971-1del		p.X324_splice	ENST00000371085	NM_000516.4	324																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56168785	56168785	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	44	488	0	ENST00000399503.3:c.1639C>T	p.Gln547Ter	p.Q547*	ENST00000399503	NM_005921.1	547	Cag/Tag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11313898	11313898	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0054873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	46	625	0	ENST00000361445.4:c.838G>T	p.Glu280Ter	p.E280*	ENST00000361445	NM_004958.3	280	Gag/Tag																																																																															
PGR	5241	MSKCC	GRCh37	11	100998726	100998726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	76	1020	0	ENST00000325455.5:c.1076C>T	p.Pro359Leu	p.P359L	ENST00000325455	NM_001202474.3	359	cCc/cTc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942199	17942199	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	67	798	0	ENST00000458235.1:c.2816A>G	p.Tyr939Cys	p.Y939C	ENST00000458235	NM_000215.3	939	tAc/tGc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190656608	190656608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	57	348	1	ENST00000441310.2:c.73G>T	p.Val25Leu	p.V25L	ENST00000441310	NM_000534.4	25	Gta/Tta																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265325	46265325	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	129	411	0	ENST00000371998.3:c.2195A>T	p.Lys732Met	p.K732M	ENST00000371998		732	aAg/aTg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374369	138374369	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0054873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	40	398	0	ENST00000289153.2:c.3076-1G>A		p.X1026_splice	ENST00000289153	NM_006219.2	1026																																																																																
EPHA7	2045	MSKCC	GRCh37	6	93956594	93956594	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	41	494	0	ENST00000369303.4:c.2642C>A	p.Pro881Gln	p.P881Q	ENST00000369303	NM_004440.3	881	cCa/cAa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455080	50455080	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	240	519	0	ENST00000331340.3:c.627C>A	p.Ser209Arg	p.S209R	ENST00000331340	NM_006060.4	209	agC/agA																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449788	8449789	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0054873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	47	721	1	ENST00000356435.5:c.3924_3925delinsTT	p.Lys1308_Glu1309delinsAsnTer	p.K1308_E1309delinsN*	ENST00000356435		1308	aaGGag/aaTTag																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652483	48652483	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	101	1155	0	ENST00000376670.3:c.1154C>G	p.Pro385Arg	p.P385R	ENST00000376670	NM_002049.3	385	cCc/cGc																																																																															
AR	367	MSKCC	GRCh37	X	66931375	66931375	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	72	774	0	ENST00000374690.3:c.2017A>T	p.Ile673Phe	p.I673F	ENST00000374690	NM_000044.3	673	Atc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0054875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	24	407	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156734	20156734	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	21	391	0	ENST00000379607.5:c.23G>C	p.Gly8Ala	p.G8A	ENST00000379607	NM_001412.3	8	gGa/gCa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	430262	430262	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	20	314	0	ENST00000399788.2:c.2440A>C	p.Ser814Arg	p.S814R	ENST00000399788	NM_001042603.1	814	Agt/Cgt																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805506	46805506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	64	924	0	ENST00000290295.7:c.450G>T	p.Gln150His	p.Q150H	ENST00000290295	NM_006361.5	150	caG/caT																																																																															
STK11	6794	MSKCC	GRCh37	19	1221339	1221339	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0054875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	54	678	0	ENST00000326873.7:c.862+1del		p.G288fs	ENST00000326873	NM_000455.4	288	Ggg/gg																																																																															
EP300	2033	MSKCC	GRCh37	22	41573569	41573569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	43	845	0	ENST00000263253.7:c.5854A>G	p.Ile1952Val	p.I1952V	ENST00000263253	NM_001429.3	1952	Atc/Gtc																																																																															
ARAF	369	MSKCC	GRCh37	X	47428213	47428213	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	63	853	0	ENST00000377045.4:c.1173C>A	p.Tyr391Ter	p.Y391*	ENST00000377045	NM_001654.4	391	taC/taA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	41	411	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248736	212248737	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0054882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	31	354	0	ENST00000342788.4:c.3530dup	p.Asn1177LysfsTer9	p.N1177Kfs*9	ENST00000342788	NM_005235.2	1177	aat/aaAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577084	7577151	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGTGCGCCGGTCTCTCCCAGGACAGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATT	TCTGTGCGCCGGTCTCTCCCAGGACAGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATT	-			P-0054882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	70	711	2	ENST00000269305.4:c.787_854del	p.Asn263GlyfsTer20	p.N263Gfs*20	ENST00000269305	NM_001126112.2	263	AATCTACTGGGACGGAACAGCTTTGAGGTGCGTGTTTGTGCCTGTCCTGGGAGAGACCGGCGCACAGAg/g																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741666	17741666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	35	494	0	ENST00000250003.3:c.337G>A	p.Ala113Thr	p.A113T	ENST00000250003	NM_002478.4	113	Gcc/Acc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061218	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCCGTTCTCGAACATGTT	GCCGTTCTCGAACATGTT	-			P-0054883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	26	660	0	ENST00000250448.2:c.754_771del	p.Asn252_Gly257del	p.N252_G257del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGC/-																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	30	581	0	ENST00000347630.2:c.260A>C	p.Tyr87Ser	p.Y87S	ENST00000347630	NM_001007230.1	87	tAc/tCc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1936921	1936931	+	protein_altering_variant	In_Frame_Del	DEL	ACAGAAGATGC	ACAGAAGATGC	GG			P-0054883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	22	602	2	ENST00000382891.5:c.1606_1616delinsGG	p.Thr536_Ala539delinsGly	p.T536_A539delinsG	ENST00000382891	NM_133335.3	536	ACAGAAGATGCt/GGt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673703	30673703	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	59	736	0	ENST00000376406.3:c.3257G>C	p.Ser1086Thr	p.S1086T	ENST00000376406	NM_014641.2	1086	aGt/aCt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533853	63533853	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	GC			P-0054883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	91	918	0	ENST00000307078.5:c.1301delinsGC	p.Asp434GlyfsTer28	p.D434Gfs*28	ENST00000307078	NM_004655.3	434	gAc/gGCc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696450	47696450	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	225	482	0	ENST00000347630.2:c.373T>A	p.Phe125Ile	p.F125I	ENST00000347630	NM_001007230.1	125	Ttt/Att																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870863	12870864	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	109	301	0	ENST00000228872.4:c.92dup	p.Asn31LysfsTer94	p.N31Kfs*94	ENST00000228872	NM_004064.3	30	-/A																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831749	72831750	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0054888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	157	832	0	ENST00000268489.5:c.4831_4832del	p.Leu1611GlyfsTer50	p.L1611Gfs*50	ENST00000268489	NM_006885.3	1611	CTg/g																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110621	8110621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	144	756	1	ENST00000585124.1:c.271G>A	p.Val91Met	p.V91M	ENST00000585124	NM_004217.3	91	Gtg/Atg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480499	89480499	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	62	257	0	ENST00000336596.2:c.2336A>G	p.Tyr779Cys	p.Y779C	ENST00000336596	NM_005233.5	779	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0054890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	21	397	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0054890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	39	491	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0054895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	101	414	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685313	89685313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0054895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	28	243	0	ENST00000371953.3:c.208C>A	p.Leu70Ile	p.L70I	ENST00000371953	NM_000314.4	70	Ctt/Att																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248666	212248666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	100	606	0	ENST00000342788.4:c.3601G>A	p.Glu1201Lys	p.E1201K	ENST00000342788	NM_005235.2	1201	Gag/Aag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248420	212248420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	65	353	0	ENST00000342788.4:c.3847G>A	p.Glu1283Lys	p.E1283K	ENST00000342788	NM_005235.2	1283	Gaa/Aaa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170492	11170492	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	204	980	0	ENST00000344626.4:c.4699G>T	p.Glu1567Ter	p.E1567*	ENST00000344626	NM_003072.3	1567	Gag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593478	48593479	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0054895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	76	373	0	ENST00000342988.3:c.1231_1232del	p.Ser411LeufsTer17	p.S411Lfs*17	ENST00000342988	NM_005359.5	410	cAG/c																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965421	18965421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	104	613	0	ENST00000262803.5:c.1168G>A	p.Glu390Lys	p.E390K	ENST00000262803	NM_002911.3	390	Gag/Aag																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020724	26020724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	64	367	0	ENST00000357647.3:c.7C>T	p.Arg3Cys	p.R3C	ENST00000357647	NM_003529.2	3	Cgc/Tgc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528180	157528180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	157	719	0	ENST00000346085.5:c.5905C>T	p.Pro1969Ser	p.P1969S	ENST00000346085	NM_020732.3	1969	Cca/Tca																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88659584	88659584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	90	607	1	ENST00000372037.3:c.367G>A	p.Glu123Lys	p.E123K	ENST00000372037	NM_004329.2	123	Gaa/Aaa																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001384	29001384	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	83	425	1	ENST00000282397.4:c.1348C>T	p.Gln450Ter	p.Q450*	ENST00000282397	NM_002019.4	450	Caa/Taa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436542	110436542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1874	294	1293	0	ENST00000375856.3:c.1859C>T	p.Ser620Phe	p.S620F	ENST00000375856	NM_003749.2	620	tCt/tTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29679316	29679316	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	92	449	0	ENST00000358273.4:c.7499del	p.Ser2500LeufsTer23	p.S2500Lfs*23	ENST00000358273	NM_001042492.2	2500	tCt/tt																																																																															
STK11	6794	MSKCC	GRCh37	19	1219405	1219405	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	213	830	0	ENST00000326873.7:c.457G>C	p.Ala153Pro	p.A153P	ENST00000326873	NM_000455.4	153	Gcc/Ccc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2193708	2193708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	178	955	0	ENST00000398665.3:c.514C>T	p.Gln172Ter	p.Q172*	ENST00000398665	NM_032482.2	172	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610561	10610562	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGTT			P-0054895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1278	211	1109	0	ENST00000171111.5:c.145_148dup	p.Arg50GlnfsTer30	p.R50Qfs*30	ENST00000171111	NM_203500.1	50	cgc/cAACCgc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47158201	47158201	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	65	483	1	ENST00000409792.3:c.4498G>T	p.Glu1500Ter	p.E1500*	ENST00000409792	NM_014159.6	1500	Gag/Tag																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1936901	1936901	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	90	516	0	ENST00000382891.5:c.1586C>G	p.Thr529Arg	p.T529R	ENST00000382891	NM_133335.3	529	aCa/aGa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518761	176518761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1451	187	1081	0	ENST00000292408.4:c.679G>A	p.Glu227Lys	p.E227K	ENST00000292408	NM_213647.1	227	Gag/Aag																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64290057	64290057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	73	516	0	ENST00000370651.3:c.500G>A	p.Arg167Lys	p.R167K	ENST00000370651	NM_003463.4	167	aGa/aAa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864889	117864889	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	85	534	0	ENST00000297338.2:c.1220G>C	p.Gly407Ala	p.G407A	ENST00000297338	NM_006265.2	407	gGa/gCa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135776115	135776115	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0054895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	111	484	0	ENST00000298552.3:c.2612C>G	p.Ser871Ter	p.S871*	ENST00000298552	NM_001162426.1	871	tCa/tGa																																																																															
NF1	4763	MSKCC	GRCh37	17	29663727	29663729	+	frameshift_variant	Frame_Shift_Del	DEL	GTG	GTG	T			P-0054895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	81	566	0	ENST00000358273.4:c.6222_6224delinsT	p.Met2074IlefsTer3	p.M2074Ifs*3	ENST00000358273	NM_001042492.2	2074	atGTGg/atTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs387906846		P-0054897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	14	712	1	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0054918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	73	358	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0054918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	168	870	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																															
MAX	4149	MSKCC	GRCh37	14	65544630	65544630	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0054918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	125	611	0	ENST00000358664.4:c.295+1G>A		p.X99_splice	ENST00000358664	NM_002382.4	99																																																																																
POLE	5426	MSKCC	GRCh37	12	133214699	133214699	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	127	537	0	ENST00000320574.5:c.5579G>C	p.Gly1860Ala	p.G1860A	ENST00000320574	NM_006231.2	1860	gGg/gCg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73335784	73335784	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0054918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	85	313	0	ENST00000377767.4:c.2511G>T	p.Gln837His	p.Q837H	ENST00000377767	NM_014953.3	837	caG/caT																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249782	110249782	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	290	766	0	ENST00000374672.4:c.893A>G	p.His298Arg	p.H298R	ENST00000374672	NM_004235.4	298	cAc/cGc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123159739	123159739	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	73	349	0	ENST00000218089.9:c.94G>C	p.Gly32Arg	p.G32R	ENST00000218089	NM_001042749.1	32	Gga/Cga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0054948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	12	409	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926270	112926270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	11	619	0	ENST00000351677.2:c.1403C>T	p.Thr468Met	p.T468M	ENST00000351677	NM_002834.3	468	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	12	987	0	ENST00000269305.4:c.487T>A	p.Tyr163Asn	p.Y163N	ENST00000269305	NM_001126112.2	163	Tac/Aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0054135-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			522	524	507	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126343	5126343	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41316003		P-0054135-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			158	15	295	0	ENST00000381652.3:c.3188G>A	p.Arg1063His	p.R1063H	ENST00000381652	NM_004972.3	1063	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054135-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			775	201	835	0	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	144	585	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165321	47165321	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	48	454	0	ENST00000409792.3:c.805C>T	p.Gln269Ter	p.Q269*	ENST00000409792	NM_014159.6	269	Caa/Taa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761283	59761283	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	33	740	0	ENST00000259008.2:c.3124G>C	p.Glu1042Gln	p.E1042Q	ENST00000259008	NM_032043.2	1042	Gaa/Caa																																																																															
PMS1	5378	MSKCC	GRCh37	2	190682895	190682895	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	54	413	0	ENST00000441310.2:c.571G>C	p.Val191Leu	p.V191L	ENST00000441310	NM_000534.4	191	Gta/Cta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	324	390	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0054925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	121	530	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056425	26056427	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-	rs774779034		P-0054925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	78	383	0	ENST00000343677.2:c.230_232del	p.Asn77del	p.N77del	ENST00000343677	NM_005319.3	77	aACAgc/agc																																																																															
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	211	405	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44514872	44514873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0054925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	121	514	0	ENST00000291552.4:c.374dup	p.Ala126GlyfsTer4	p.A126Gfs*4	ENST00000291552	NM_006758.2	125	aag/aaAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0054928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	37	612	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534320	63534320	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0054928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	109	572	0	ENST00000307078.5:c.1200+1G>A		p.X400_splice	ENST00000307078	NM_004655.3	400																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	19	355	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0046672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	44	617	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0046672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	20	249	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	156	364	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686326	30686326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	131	335	0	ENST00000359013.4:c.257G>A	p.Cys86Tyr	p.C86Y	ENST00000359013	NM_001024847.2	86	tGt/tAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539002	187539003	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGTTGAC			P-0050650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	148	395	0	ENST00000441802.2:c.8731_8737dup	p.Asp2913GlyfsTer4	p.D2913Gfs*4	ENST00000441802	NM_005245.3	2913	gat/gGTCAACGat																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0053663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	82	719	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0053663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	45	479	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793008	33793010	+	inframe_deletion	In_Frame_Del	DEL	CGC	CGC	-			P-0053663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	8	78	1	ENST00000498907.2:c.311_313del	p.Gly104del	p.G104del	ENST00000498907	NM_004364.3	104	gGCGac/gac																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575476	64575476	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	250	826	0	ENST00000337652.1:c.556C>G	p.His186Asp	p.H186D	ENST00000337652	NM_130803.2	186	Cat/Gat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	285	539	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175447	112175447	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0033716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	183	356	0	ENST00000257430.4:c.4156A>T	p.Arg1386Ter	p.R1386*	ENST00000257430	NM_000038.5	1386	Aga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356248	66356248	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202046693		P-0033716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	163	654	0	ENST00000273854.3:c.1249C>T	p.Arg417Trp	p.R417W	ENST00000273854	NM_004439.5	417	Cgg/Tgg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520141	9520141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	132	493	1	ENST00000353224.5:c.2128G>A	p.Val710Ile	p.V710I	ENST00000353224	NM_177990.2	710	Gtc/Atc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099063	27099064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	159	553	0	ENST00000324856.7:c.3482dup	p.Pro1162AlafsTer31	p.P1162Afs*31	ENST00000324856	NM_006015.4	1160	tta/ttAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831822	72831822	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	203	886	1	ENST00000268489.5:c.4759C>A	p.Pro1587Thr	p.P1587T	ENST00000268489	NM_006885.3	1587	Ccc/Acc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554422	63554422	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	170	719	0	ENST00000307078.5:c.317A>G	p.Asp106Gly	p.D106G	ENST00000307078	NM_004655.3	106	gAt/gGt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47142987	47142987	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	149	542	0	ENST00000409792.3:c.4976G>T	p.Gly1659Val	p.G1659V	ENST00000409792	NM_014159.6	1659	gGc/gTc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912658	29912852	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCAGGAGGGCTATTGGTCCAGGACCCACACCTGCTTTCTTCATGTTTCCTGATCCCGCCCTGGGTCTGCAGTCACACATTTCTGGAAACTTCTCTGGGGTCCAAGACTAGGAGGTTCCTCTAGGACCTTAAGGCCCTGGCTCCTTTCTGGTATCTCACAGGACATTTTCTTCTCACAGATAGAAAAGGAGGGAGT	TCAGGAGGGCTATTGGTCCAGGACCCACACCTGCTTTCTTCATGTTTCCTGATCCCGCCCTGGGTCTGCAGTCACACATTTCTGGAAACTTCTCTGGGGTCCAAGACTAGGAGGTTCCTCTAGGACCTTAAGGCCCTGGCTCCTTTCTGGTATCTCACAGGACATTTTCTTCTCACAGATAGAAAAGGAGGGAGT	-			P-0033716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	91	142	0	ENST00000376809.5:c.1013-177_1030del		p.X338_splice	ENST00000376809	NM_002116.7	338																																																																																
TGFBR1	7046	MSKCC	GRCh37	9	101900180	101900180	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	94	369	0	ENST00000374994.4:c.614T>C	p.Ile205Thr	p.I205T	ENST00000374994	NM_004612.2	205	aTt/aCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	96	529	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	64	277	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	82	260	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	182	430	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579713	7579713	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	119	635	0	ENST00000269305.4:c.83A>T	p.Glu28Val	p.E28V	ENST00000269305	NM_001126112.2	28	gAa/gTa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86629102	86629102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	61	291	0	ENST00000274376.6:c.847C>T	p.Arg283Cys	p.R283C	ENST00000274376	NM_002890.2	283	Cgt/Tgt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2949727	2949727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	197	880	0	ENST00000396946.4:c.3217G>A	p.Val1073Met	p.V1073M	ENST00000396946	NM_032415.4	1073	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0036633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	90	697	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0036633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	87	710	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0036633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	21	291	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006897	47006897	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	159	772	1	ENST00000329236.7:c.17G>A	p.Arg6His	p.R6H	ENST00000329236	NM_001204466.1	6	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0036834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	365	622	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0036834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	85	280	1	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175536	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	56	345	0	ENST00000257430.4:c.4245del	p.Ser1415ArgfsTer4	p.S1415Rfs*4	ENST00000257430	NM_000038.5	1415	agT/ag																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562387	21562387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	370	528	0	ENST00000382592.4:c.1532G>A	p.Arg511Gln	p.R511Q	ENST00000382592	NM_014572.2	511	cGg/cAg																																																																															
AC008738.1	0	MSKCC	GRCh37	19	33792755	33792757	+	splice_acceptor_variant,intron_variant,non_coding_transcript_variant	Splice_Site	DEL	GGC	GGC	-	rs781757114		P-0036834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	17	73	0	ENST00000425420.2:n.247-4_247-2del		p.X83_splice	ENST00000425420		83																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114920402	114920402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	298	518	0	ENST00000543371.1:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000543371	NM_001198531.1	448	cGg/cAg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670843	134670843	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	139	363	1	ENST00000398015.3:c.754C>T	p.Arg252Ter	p.R252*	ENST00000398015	NM_004441.4	252	Cga/Tga																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622057	1622057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	227	762	0	ENST00000344749.5:c.818G>A	p.Arg273His	p.R273H	ENST00000344749	NM_001136139.2	273	cGt/cAt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467988	50467988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	225	450	0	ENST00000331340.3:c.1223G>A	p.Arg408His	p.R408H	ENST00000331340	NM_006060.4	408	cGc/cAc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48651681	48651681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	348	320	1	ENST00000376670.3:c.847G>A	p.Gly283Ser	p.G283S	ENST00000376670	NM_002049.3	283	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	52	408	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480345	89480345	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	23	267	0	ENST00000336596.2:c.2182C>T	p.Arg728Ter	p.R728*	ENST00000336596	NM_005233.5	728	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0036977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	79	501	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
EP300	2033	MSKCC	GRCh37	22	41545898	41545898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	149	670	0	ENST00000263253.7:c.2513G>A	p.Arg838His	p.R838H	ENST00000263253	NM_001429.3	838	cGt/cAt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288765	33288765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	79	433	1	ENST00000374542.5:c.787C>T	p.Arg263Cys	p.R263C	ENST00000374542	NM_001141970.1	263	Cgc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42041903	42041903	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	15	442	0	ENST00000219905.7:c.6098A>C	p.Asp2033Ala	p.D2033A	ENST00000219905	NM_001164273.1	2033	gAt/gCt																																																																															
ALK	238	MSKCC	GRCh37	2	30143351	30143351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	43	323	0	ENST00000389048.3:c.175G>T	p.Val59Leu	p.V59L	ENST00000389048	NM_004304.4	59	Gtg/Ttg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285296	212285296	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	29	366	0	ENST00000342788.4:c.3005A>G	p.Lys1002Arg	p.K1002R	ENST00000342788	NM_005235.2	1002	aAg/aGg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212576886	212576886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	15	320	0	ENST00000342788.4:c.1013G>A	p.Gly338Asp	p.G338D	ENST00000342788	NM_005235.2	338	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175544	112175545	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	23	270	0	ENST00000257430.4:c.4255dup	p.Ser1419LysfsTer4	p.S1419Kfs*4	ENST00000257430	NM_000038.5	1418	ata/atAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0037084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	246	556	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920469	134920469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	65	481	0	ENST00000398015.3:c.2284G>A	p.Asp762Asn	p.D762N	ENST00000398015	NM_004441.4	762	Gac/Aac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593532	48593532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	28	170	0	ENST00000342988.3:c.1283A>T	p.Lys428Met	p.K428M	ENST00000342988	NM_005359.5	428	aAg/aTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361108	66361108	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0037084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	35	264	0	ENST00000273854.3:c.1064C>A	p.Thr355Lys	p.T355K	ENST00000273854	NM_004439.5	355	aCa/aAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	278	522	1	ENST00000269305.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000269305	NM_001126112.2	105	Ggc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0037486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	219	300	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18800921	18800921	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201612275		P-0037486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	193	356	1	ENST00000266497.5:c.4297G>A	p.Asp1433Asn	p.D1433N	ENST00000266497		1433	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0037673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	355	541	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0037673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	130	235	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844776	156844776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	232	466	0	ENST00000524377.1:c.1330C>T	p.Arg444Trp	p.R444W	ENST00000524377	NM_002529.3	444	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0037673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	218	308	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
TAP1	6890	MSKCC	GRCh37	6	32813553	32813553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	19	270	0	ENST00000354258.4:c.2230C>T	p.Leu744Phe	p.L744F	ENST00000354258	NM_000593.5	744	Ctc/Ttc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044988	47044988	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	316	292	0	ENST00000329236.7:c.2080G>T	p.Glu694Ter	p.E694*	ENST00000329236	NM_001204466.1	694	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0037957-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	465	720	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0037957-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			166	77	237	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037957-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			196	93	238	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0037957-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			236	158	283	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11199670	11199670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037957-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			599	137	558	2	ENST00000361445.4:c.4918C>T	p.Arg1640Trp	p.R1640W	ENST00000361445	NM_004958.3	1640	Cgg/Tgg																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589648	69589648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037957-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			196	63	163	1	ENST00000168712.1:c.205G>A	p.Val69Ile	p.V69I	ENST00000168712	NM_002007.2	69	Gtc/Atc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435111	110435111	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037957-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1707	393	710	0	ENST00000375856.3:c.3290G>C	p.Arg1097Pro	p.R1097P	ENST00000375856	NM_003749.2	1097	cGc/cCc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120471	70120472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0037957-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	254	879	0	ENST00000245479.2:c.1474_1475dup	p.His493ProfsTer31	p.H493Pfs*31	ENST00000245479	NM_000346.3	491	-/AC																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410907	63410907	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037957-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			554	84	329	0	ENST00000330258.3:c.2260C>A	p.Pro754Thr	p.P754T	ENST00000330258	NM_152424.3	754	Cca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	190	647	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0038599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	120	224	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	156	416	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920419	114920419	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	202	533	0	ENST00000543371.1:c.1360G>T	p.Asp454Tyr	p.D454Y	ENST00000543371	NM_001198531.1	454	Gac/Tac																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457408	67457408	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	331	725	0	ENST00000327367.4:c.382C>T	p.Gln128Ter	p.Q128*	ENST00000327367	NM_005902.3	128	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0038903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	438	675	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0038903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	242	475	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131973851	131973851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	139	432	0	ENST00000265335.6:c.3554G>A	p.Arg1185Gln	p.R1185Q	ENST00000265335		1185	cGa/cAa																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134423	41134423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148177044		P-0038903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1330	450	540	0	ENST00000379561.5:c.1205C>T	p.Thr402Met	p.T402M	ENST00000379561	NM_002015.3	402	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0038903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	495	545	0	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913836	32913837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	607	484	0	ENST00000380152.3:c.5351dup	p.Asn1784LysfsTer3	p.N1784Kfs*3	ENST00000380152		1782	caa/cAaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69031691	69031691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	216	426	0	ENST00000288368.4:c.3446G>A	p.Arg1149His	p.R1149H	ENST00000288368	NM_024870.2	1149	cGc/cAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76907618	76907618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	90	530	0	ENST00000373344.5:c.4543G>A	p.Glu1515Lys	p.E1515K	ENST00000373344	NM_000489.3	1515	Gaa/Aaa																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675073	40675073	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1350	266	739	0	ENST00000249776.8:c.37T>G	p.Phe13Val	p.F13V	ENST00000249776	NM_033286.3	13	Ttc/Gtc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0038903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	580	666	0	ENST00000407977.2:c.348_349dup	p.Arg117ProfsTer42	p.R117Pfs*42	ENST00000407977		117	cgc/cCCgc																																																																															
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0039323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	254	342	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0039323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	453	500	0	ENST00000269305.4:c.993+1G>C		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139397640	139397640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	553	565	0	ENST00000277541.6:c.5161G>A	p.Val1721Met	p.V1721M	ENST00000277541	NM_017617.3	1721	Gtg/Atg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59820468	59820468	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200960251		P-0039323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	241	399	0	ENST00000259008.2:c.2285G>A	p.Arg762His	p.R762H	ENST00000259008	NM_032043.2	762	cGt/cAt																																																																															
ATM	472	MSKCC	GRCh37	11	108236074	108236074	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	176	461	0	ENST00000278616.4:c.9012del	p.Val3005Ter	p.V3005*	ENST00000278616	NM_000051.3	3004	Aaa/aa																																																																															
CBL	867	MSKCC	GRCh37	11	119156038	119156038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	293	603	0	ENST00000264033.4:c.1703C>T	p.Thr568Ile	p.T568I	ENST00000264033	NM_005188.3	568	aCa/aTa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624959	9624959	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	128	236	0	ENST00000353224.5:c.18G>T	p.Lys6Asn	p.K6N	ENST00000353224	NM_177990.2	6	aaG/aaT																																																																															
APC	324	MSKCC	GRCh37	5	112175745	112175751	+	frameshift_variant	Frame_Shift_Del	DEL	CTGATAC	CTGATAC	-			P-0039323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	91	301	0	ENST00000257430.4:c.4454_4460del	p.Ala1485ValfsTer20	p.A1485Vfs*20	ENST00000257430	NM_000038.5	1485	gCTGATACt/gt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117638368	117638368	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	151	397	0	ENST00000368508.3:c.6073A>G	p.Ile2025Val	p.I2025V	ENST00000368508	NM_002944.2	2025	Atc/Gtc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317435	1317435	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0039323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	254	483	0				ENST00000381566																																																																																		
TNFRSF14	8764	MSKCC	GRCh37	1	2491363	2491363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	58	879	0	ENST00000355716.4:c.406G>A	p.Ala136Thr	p.A136T	ENST00000355716	NM_003820.2	136	Gcc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	39	118	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																																																															
BCL10	8915	MSKCC	GRCh37	1	85736510	85736511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs387906351		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	29	293	2	ENST00000370580.1:c.136dup	p.Ile46AsnfsTer4	p.I46Nfs*4	ENST00000370580	NM_003921.4	46	ata/aAta																																																																															
CDC73	79577	MSKCC	GRCh37	1	193099332	193099332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	20	348	0	ENST00000367435.3:c.266C>A	p.Pro89His	p.P89H	ENST00000367435	NM_024529.4	89	cCt/cAt																																																																															
PARP1	142	MSKCC	GRCh37	1	226568838	226568838	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	69	774	1	ENST00000366794.5:c.1231A>G	p.Met411Val	p.M411V	ENST00000366794	NM_001618.3	411	Atg/Gtg																																																																															
RET	5979	MSKCC	GRCh37	10	43597940	43597940	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149403911		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	88	1000	3	ENST00000355710.3:c.488G>A	p.Arg163Gln	p.R163Q	ENST00000355710	NM_020975.4	163	cGg/cAg																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724511	112724511	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	27	555	1	ENST00000369452.4:c.395G>C	p.Ser132Thr	p.S132T	ENST00000369452	NM_007373.3	132	aGt/aCt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	66	474	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138920	64138920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	86	693	1	ENST00000334205.4:c.2287C>T	p.Arg763Cys	p.R763C	ENST00000334205	NM_003942.2	763	Cgc/Tgc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625143	69625143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	44	859	4	ENST00000334134.2:c.650C>T	p.Pro217Leu	p.P217L	ENST00000334134	NM_005247.2	217	cCg/cTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948483	71948484	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	70	1006	1	ENST00000298229.2:c.3201dup	p.Ser1068GlnfsTer17	p.S1068Qfs*17	ENST00000298229	NM_001567.3	1065	-/C																																																																															
EED	8726	MSKCC	GRCh37	11	85967540	85967540	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	18	351	0	ENST00000263360.6:c.538A>G	p.Met180Val	p.M180V	ENST00000263360	NM_003797.3	180	Atg/Gtg																																																																															
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	32	537	2	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																															
ATM	472	MSKCC	GRCh37	11	108201067	108201067	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	19	360	0	ENST00000278616.4:c.7434A>C	p.Glu2478Asp	p.E2478D	ENST00000278616	NM_000051.3	2478	gaA/gaC																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118352745	118352747	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	23	487	0	ENST00000534358.1:c.3953_3955del	p.Glu1318del	p.E1318del	ENST00000534358	NM_005933.3	1317	aAAGaa/aaa																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125497611	125497611	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	14	326	0	ENST00000428830.2:c.175A>G	p.Asn59Asp	p.N59D	ENST00000428830	NM_001114121.2	59	Aat/Gat																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	15	353	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	406360	406360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	18	547	2	ENST00000399788.2:c.4081G>A	p.Ala1361Thr	p.A1361T	ENST00000399788	NM_001042603.1	1361	Gcc/Acc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	498235	498235	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	10	298	1	ENST00000399788.2:c.23del	p.Gly8AlafsTer58	p.G8Afs*58	ENST00000399788	NM_001042603.1	8	gGc/gc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245000	46245000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	49	669	1	ENST00000334344.6:c.3094C>T	p.Gln1032Ter	p.Q1032*	ENST00000334344	NM_152641.2	1032	Cag/Tag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287469	46287469	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	16	324	0	ENST00000334344.6:c.5333del	p.Asn1778IlefsTer13	p.N1778Ifs*13	ENST00000334344	NM_152641.2	1776	ttA/tt																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50482355	50482355	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	95	564	1	ENST00000394963.4:c.711del	p.Phe237LeufsTer5	p.F237Lfs*5	ENST00000394963	NM_003076.4	236	Ttt/tt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856373	111856373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	61	213	0	ENST00000341259.2:c.424C>A	p.Leu142Ile	p.L142I	ENST00000341259	NM_005475.2	142	Ctc/Atc																																																																															
POLE	5426	MSKCC	GRCh37	12	133241002	133241002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	79	656	1	ENST00000320574.5:c.2515G>A	p.Gly839Arg	p.G839R	ENST00000320574	NM_006231.2	839	Ggg/Agg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563047	21563047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	132	909	1	ENST00000382592.4:c.872C>T	p.Thr291Met	p.T291M	ENST00000382592	NM_014572.2	291	aCg/aTg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26975441	26975441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	45	505	0	ENST00000381527.3:c.1067G>A	p.Arg356Gln	p.R356Q	ENST00000381527	NM_001260.1	356	cGa/cAa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582875	95582875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	12	345	0	ENST00000343455.3:c.1667C>A	p.Pro556His	p.P556H	ENST00000343455	NM_177438.2	556	cCc/cAc																																																																															
CD276	80381	MSKCC	GRCh37	15	73995370	73995370	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199765601		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	25	422	0	ENST00000318443.5:c.676G>A	p.Val226Met	p.V226M	ENST00000318443	NM_001024736.1	226	Gtg/Atg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99478221	99478221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	23	377	0	ENST00000268035.6:c.3125G>A	p.Arg1042His	p.R1042H	ENST00000268035	NM_000875.3	1042	cGt/cAt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2224321	2224321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	144	819	0	ENST00000326181.6:c.1333C>T	p.Leu445Phe	p.L445F	ENST00000326181	NM_032271.2	445	Ctc/Ttc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226049	2226049	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	50	850	0	ENST00000326181.6:c.1747-1G>T		p.X583_splice	ENST00000326181	NM_032271.2	583																																																																																
SLX4	84464	MSKCC	GRCh37	16	3646297	3646297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	79	921	0	ENST00000294008.3:c.1781G>A	p.Gly594Asp	p.G594D	ENST00000294008	NM_032444.2	594	gGc/gAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781901	3781903	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-	rs751071525		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	23	697	0	ENST00000262367.5:c.4764_4766del	p.Lys1588del	p.K1588del	ENST00000262367	NM_004380.2	1588	aaGAAc/aac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817766	3817766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	104	577	1	ENST00000262367.5:c.3205G>A	p.Gly1069Ser	p.G1069S	ENST00000262367	NM_004380.2	1069	Ggc/Agc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	37	627	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923836	72923836	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	24	555	0	ENST00000268489.5:c.3242T>C	p.Val1081Ala	p.V1081A	ENST00000268489	NM_006885.3	1081	gTa/gCa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991703	72991703	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201821212		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	23	459	3	ENST00000268489.5:c.2342C>T	p.Ala781Val	p.A781V	ENST00000268489	NM_006885.3	781	gCg/gTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	75	749	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	95	635	3	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
EZH1	2145	MSKCC	GRCh37	17	40865349	40865349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	166	737	0	ENST00000428826.2:c.1082G>A	p.Arg361His	p.R361H	ENST00000428826		361	cGc/cAc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532644	63532644	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	73	860	0	ENST00000307078.5:c.1935del	p.Leu646TrpfsTer43	p.L646Wfs*43	ENST00000307078	NM_004655.3	645	ccC/cc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554038	63554038	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	134	574	1	ENST00000307078.5:c.701G>A	p.Trp234Ter	p.W234*	ENST00000307078	NM_004655.3	234	tGg/tAg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78933974	78933974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	111	857	0	ENST00000306801.3:c.3574G>A	p.Val1192Ile	p.V1192I	ENST00000306801	NM_020761.2	1192	Gtc/Atc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395793	45395793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	39	298	0	ENST00000262160.6:c.341G>A	p.Arg114His	p.R114H	ENST00000262160	NM_005901.5	114	cGt/cAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231449	5231449	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	114	762	1	ENST00000357368.4:c.2027del	p.Pro676ArgfsTer134	p.P676Rfs*134	ENST00000357368	NM_002850.3	676	cCg/cg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291507	15291507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	59	698	2	ENST00000263388.2:c.3127G>A	p.Ala1043Thr	p.A1043T	ENST00000263388	NM_000435.2	1043	Gcc/Acc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303055	15303055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	35	1020	1	ENST00000263388.2:c.395C>T	p.Ala132Val	p.A132V	ENST00000263388	NM_000435.2	132	gCc/gTc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19261529	19261529	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	44	674	2	ENST00000162023.5:c.16del	p.Ile6SerfsTer14	p.I6Sfs*14	ENST00000162023		6	Atc/tc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36209221	36209221	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	14	343	0	ENST00000222270.7:c.301T>C	p.Trp101Arg	p.W101R	ENST00000222270	NM_014727.1	101	Tgg/Cgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	50	1003	6	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	58	1036	0	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224699	36224699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	70	1017	1	ENST00000222270.7:c.7085C>T	p.Pro2362Leu	p.P2362L	ENST00000222270	NM_014727.1	2362	cCg/cTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42796784	42796784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	98	908	0	ENST00000575354.2:c.3242C>A	p.Pro1081Gln	p.P1081Q	ENST00000575354	NM_015125.3	1081	cCg/cAg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50916702	50916702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	89	672	0	ENST00000440232.2:c.2174G>A	p.Arg725His	p.R725H	ENST00000440232	NM_002691.3	725	cGt/cAt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52729053	52729053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	42	558	0	ENST00000322088.6:c.1745C>A	p.Ala582Asp	p.A582D	ENST00000322088	NM_014225.5	582	gCt/gAt																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085971	16085971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	25	605	0	ENST00000281043.3:c.1147C>T	p.Arg383Cys	p.R383C	ENST00000281043	NM_005378.4	383	Cgc/Tgc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25964953	25964953	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	38	460	0	ENST00000435504.4:c.4253A>G	p.His1418Arg	p.H1418R	ENST00000435504		1418	cAt/cGt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47639588	47639588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	14	448	0	ENST00000233146.2:c.687del	p.Ala230LeufsTer16	p.A230Lfs*16	ENST00000233146	NM_000251.2	227	agA/ag																																																																															
REL	5966	MSKCC	GRCh37	2	61145358	61145358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	20	381	2	ENST00000295025.8:c.568C>T	p.Arg190Cys	p.R190C	ENST00000295025	NM_002908.2	190	Cgt/Tgt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225339003	225339003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	18	430	0	ENST00000264414.4:c.2266C>T	p.Arg756Ter	p.R756*	ENST00000264414	NM_003590.4	756	Cga/Tga																																																																															
EP300	2033	MSKCC	GRCh37	22	41574502	41574502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	60	779	0	ENST00000263253.7:c.6787C>T	p.Arg2263Ter	p.R2263*	ENST00000263253	NM_001429.3	2263	Cga/Tga																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913407		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	112	309	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73047264	73047264	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	32	451	0	ENST00000356692.5:c.71T>G	p.Val24Gly	p.V24G	ENST00000356692		24	gTc/gGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	30	367	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467573	66467573	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	11	352	1	ENST00000273854.3:c.696del	p.Lys232AsnfsTer36	p.K232Nfs*36	ENST00000273854	NM_004439.5	232	aaA/aa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540251	187540251	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	37	489	0	ENST00000441802.2:c.7489T>C	p.Tyr2497His	p.Y2497H	ENST00000441802	NM_005245.3	2497	Tat/Cat																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31504699	31504699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	34	650	0	ENST00000344624.3:c.1631G>A	p.Arg544His	p.R544H	ENST00000344624		544	cGc/cAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592099	67592099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	36	342	0	ENST00000274335.5:c.1915C>T	p.Arg639Ter	p.R639*	ENST00000274335		639	Cga/Tga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675570	86675571	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	16	282	0	ENST00000274376.6:c.2513dup	p.Asn838LysfsTer2	p.N838Kfs*2	ENST00000274376	NM_002890.2	836	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112178879	112178879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	13	359	0	ENST00000257430.4:c.7588C>T	p.Arg2530Trp	p.R2530W	ENST00000257430	NM_000038.5	2530	Cgg/Tgg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524364	176524364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	32	987	0	ENST00000292408.4:c.2225C>T	p.Ala742Val	p.A742V	ENST00000292408	NM_213647.1	742	gCg/gTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046050	180046050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	49	419	1	ENST00000261937.6:c.2821G>A	p.Ala941Thr	p.A941T	ENST00000261937	NM_182925.4	941	Gcc/Acc																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402683	20402683	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	59	637	0	ENST00000346618.3:c.220C>A	p.Leu74Ile	p.L74I	ENST00000346618	NM_001949.4	74	Ctc/Atc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912333	29912334	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	60	789	0	ENST00000376809.5:c.954dup	p.Gly319TrpfsTer21	p.G319Wfs*21	ENST00000376809	NM_002116.7	318	ctt/cTtt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675438	30675438	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780670990		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	77	652	5	ENST00000376406.3:c.2918C>T	p.Ala973Val	p.A973V	ENST00000376406	NM_014641.2	973	gCg/gTg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32813522	32813522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	80	574	1	ENST00000354258.4:c.2261G>A	p.Arg754His	p.R754H	ENST00000354258	NM_000593.5	754	cGc/cAc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004926	150004926	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	25	413	0	ENST00000253339.5:c.1299G>A	p.Trp433Ter	p.W433*	ENST00000253339		433	tgG/tgA																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969983	161969983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	57	647	0	ENST00000366898.1:c.986del	p.Gly329AlafsTer106	p.G329Afs*106	ENST00000366898	NM_004562.2	329	gGc/gc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	13	630	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38134008	38134008	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	43	439	1	ENST00000317025.8:c.3878C>T	p.Ala1293Val	p.A1293V	ENST00000317025	NM_023034.1	1293	gCg/gTg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187222	38187222	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	61	765	1	ENST00000317025.8:c.1255del	p.Thr419ProfsTer8	p.T419Pfs*8	ENST00000317025	NM_023034.1	419	Acc/cc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521528	8521528	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	69	544	0	ENST00000356435.5:c.710G>T	p.Arg237Ile	p.R237I	ENST00000356435		237	aGa/aTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636766	8636766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	70	538	0	ENST00000356435.5:c.143C>T	p.Thr48Met	p.T48M	ENST00000356435		48	aCg/aTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	67	702	3	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390736	139390736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	67	973	3	ENST00000277541.6:c.7455del	p.Ser2486ArgfsTer103	p.S2486Rfs*103	ENST00000277541	NM_017617.3	2485	ccC/cc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652397	48652397	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	23	962	2	ENST00000376670.3:c.1073del	p.Pro358GlnfsTer74	p.P358Qfs*74	ENST00000376670	NM_002049.3	356	ggC/gg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981863	201981863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	103	879	0	ENST00000359651.3:c.574G>A	p.Gly192Ser	p.G192S	ENST00000359651		192	Ggc/Agc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324892	31324892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	22	180	0	ENST00000412585.2:c.44del	p.Ala15GlyfsTer5	p.A15Gfs*5	ENST00000412585	NM_005514.6	15	gCg/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0040042-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			472	26	375	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040042-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			922	53	804	0	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554668	63554668	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040042-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			400	30	559	0	ENST00000307078.5:c.71C>A	p.Pro24His	p.P24H	ENST00000307078	NM_004655.3	24	cCc/cAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11227537	11227537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	117	337	0	ENST00000361445.4:c.4291G>A	p.Gly1431Arg	p.G1431R	ENST00000361445	NM_004958.3	1431	Gga/Aga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106488	27106488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	148	439	0	ENST00000324856.7:c.6099G>T	p.Lys2033Asn	p.K2033N	ENST00000324856	NM_006015.4	2033	aaG/aaT																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	183	225	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466326	120466326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	119	344	0	ENST00000256646.2:c.4793C>T	p.Ala1598Val	p.A1598V	ENST00000256646	NM_024408.3	1598	gCt/gTt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844776	156844776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	152	450	0	ENST00000524377.1:c.1330C>T	p.Arg444Trp	p.R444W	ENST00000524377	NM_002529.3	444	Cgg/Tgg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	59	191	0	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																															
TET1	80312	MSKCC	GRCh37	10	70446283	70446284	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	140	385	0	ENST00000373644.4:c.5230dup	p.Arg1744LysfsTer26	p.R1744Kfs*26	ENST00000373644	NM_030625.2	1741	-/A																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913294		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	97	259	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717778	89717778	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	72	185	0	ENST00000371953.3:c.801+2T>G		p.X267_splice	ENST00000371953	NM_000314.4	267																																																																																
WT1	7490	MSKCC	GRCh37	11	32417809	32417809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	96	262	0	ENST00000332351.3:c.1243C>T	p.His415Tyr	p.H415Y	ENST00000332351	NM_024426.4	415	Cac/Tac																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573764	64573764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	137	412	0	ENST00000337652.1:c.1004G>A	p.Arg335His	p.R335H	ENST00000337652	NM_130803.2	335	cGc/cAc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67197068	67197068	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	105	216	0	ENST00000312629.5:c.309+2T>C		p.X103_splice	ENST00000312629	NM_003952.2	103																																																																																
FGF4	2249	MSKCC	GRCh37	11	69589720	69589720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	27	68	2	ENST00000168712.1:c.133C>T	p.Arg45Cys	p.R45C	ENST00000168712	NM_002007.2	45	Cgc/Tgc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589848	69589848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	18	28	0	ENST00000168712.1:c.5C>T	p.Ser2Leu	p.S2L	ENST00000168712	NM_002007.2	2	tCg/tTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431308	49431308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	97	319	0	ENST00000301067.7:c.9831G>T	p.Gln3277His	p.Q3277H	ENST00000301067	NM_003482.3	3277	caG/caT																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856127	111856127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	114	243	0	ENST00000341259.2:c.178G>A	p.Ala60Thr	p.A60T	ENST00000341259	NM_005475.2	60	Gcc/Acc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112910829	112910829	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	120	247	0	ENST00000351677.2:c.842del	p.Asn281ThrfsTer58	p.N281Tfs*58	ENST00000351677	NM_002834.3	280	Aaa/aa																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	161	392	0	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																															
FLT3	2322	MSKCC	GRCh37	13	28674634	28674634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	15	22	0	ENST00000241453.7:c.14C>T	p.Ala5Val	p.A5V	ENST00000241453	NM_004119.2	5	gCg/gTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912361	32912361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	49	189	0	ENST00000380152.3:c.3869G>A	p.Cys1290Tyr	p.C1290Y	ENST00000380152		1290	tGc/tAc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609759	81609759	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	114	281	0	ENST00000298171.2:c.1357A>G	p.Met453Val	p.M453V	ENST00000298171	NM_000369.2	453	Atg/Gtg																																																																															
AKT1	207	MSKCC	GRCh37	14	105242076	105242076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	177	464	0	ENST00000349310.3:c.348G>T	p.Glu116Asp	p.E116D	ENST00000349310	NM_001014432.1	116	gaG/gaT																																																																															
RAD51	5888	MSKCC	GRCh37	15	41021799	41021799	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	129	298	0	ENST00000267868.3:c.741G>C	p.Arg247Ser	p.R247S	ENST00000267868	NM_002875.4	247	agG/agC																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43720257	43720257	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	121	359	0	ENST00000382044.4:c.3785T>C	p.Val1262Ala	p.V1262A	ENST00000382044	NM_001141980.1	1262	gTg/gCg																																																																															
B2M	567	MSKCC	GRCh37	15	45003773	45003773	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	221	326	0	ENST00000558401.1:c.29T>G	p.Leu10Arg	p.L10R	ENST00000558401	NM_004048.2	10	cTc/cGc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67459125	67459125	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	334	419	0	ENST00000327367.4:c.545del	p.Pro182LeufsTer4	p.P182Lfs*4	ENST00000327367	NM_005902.3	181	Ccc/cc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251016	99251016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	273	416	0	ENST00000268035.6:c.320G>A	p.Arg107His	p.R107H	ENST00000268035	NM_000875.3	107	cGc/cAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	147	478	0	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2111963	2111963	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	42	461	0	ENST00000219476.3:c.1211A>G	p.Gln404Arg	p.Q404R	ENST00000219476	NM_000548.3	404	cAg/cGg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	93	333	1	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644890	67644890	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	109	346	0	ENST00000264010.4:c.155A>G	p.Gln52Arg	p.Q52R	ENST00000264010	NM_006565.3	52	cAg/cGg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821889	72821890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	66	219	0	ENST00000268489.5:c.10285dup	p.Arg3429ProfsTer2	p.R3429Pfs*2	ENST00000268489	NM_006885.3	3429	cgt/cCgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993845	72993845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	37	376	1	ENST00000268489.5:c.200C>T	p.Ser67Leu	p.S67L	ENST00000268489	NM_006885.3	67	tCg/tTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351197	89351197	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	163	397	0	ENST00000301030.4:c.1753A>G	p.Ser585Gly	p.S585G	ENST00000301030	NM_001256183.1	585	Agt/Ggt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	176	460	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	97	179	1	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
RARA	5914	MSKCC	GRCh37	17	38504699	38504699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	155	387	0	ENST00000254066.5:c.310G>A	p.Ala104Thr	p.A104T	ENST00000254066	NM_000964.3	104	Gcc/Acc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40364169	40364169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	149	394	0	ENST00000293328.3:c.1513C>T	p.Pro505Ser	p.P505S	ENST00000293328	NM_012448.3	505	Cca/Tca																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40451808	40451808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	128	448	0	ENST00000345506.4:c.590G>A	p.Arg197His	p.R197H	ENST00000345506	NM_003152.3	197	cGt/cAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	303	412	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740623	58740624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs763475304		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	127	318	1	ENST00000305921.3:c.1535dup	p.Asn512LysfsTer16	p.N512Kfs*16	ENST00000305921	NM_003620.3	510	caa/cAaa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59820469	59820469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	82	225	1	ENST00000259008.2:c.2284C>T	p.Arg762Cys	p.R762C	ENST00000259008	NM_032043.2	762	Cgt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221222	1221222	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	89	498	0	ENST00000326873.7:c.745A>G	p.Thr249Ala	p.T249A	ENST00000326873	NM_000455.4	249	Acc/Gcc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350722	15350722	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	198	475	1	ENST00000263377.2:c.3281A>G	p.Gln1094Arg	p.Q1094R	ENST00000263377	NM_058243.2	1094	cAg/cGg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17946817	17946817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	172	487	0	ENST00000458235.1:c.1830G>A	p.Met610Ile	p.M610I	ENST00000458235	NM_000215.3	610	atG/atA																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257163	19257163	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	99	335	2	ENST00000162023.5:c.800del	p.Pro267LeufsTer?	p.P267Lfs*?	ENST00000162023		267	cCt/ct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	164	536	0	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220868	36220868	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	15	149	0	ENST00000222270.7:c.4918C>T	p.Arg1640Cys	p.R1640C	ENST00000222270	NM_014727.1	1640	Cgc/Tgc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919786	50919786	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	131	400	0	ENST00000440232.2:c.2953+1G>A		p.X985_splice	ENST00000440232	NM_002691.3	985																																																																																
MSH6	2956	MSKCC	GRCh37	2	48010482	48010482	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	84	229	0	ENST00000234420.5:c.114del	p.Ala40ProfsTer41	p.A40Pfs*41	ENST00000234420	NM_000179.2	37	gCc/gc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	120	309	7	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190742010	190742010	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142159998		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	54	226	0	ENST00000441310.2:c.2647C>T	p.Arg883Cys	p.R883C	ENST00000441310	NM_000534.4	883	Cgt/Tgt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426722	212426722	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	122	314	0	ENST00000342788.4:c.2393T>G	p.Leu798Arg	p.L798R	ENST00000342788	NM_005235.2	798	cTt/cGt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	120	410	1	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																															
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	166	545	0	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																															
MLH1	4292	MSKCC	GRCh37	3	37042545	37042545	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	73	190	1	ENST00000231790.2:c.306+1G>A		p.X102_splice	ENST00000231790	NM_000249.3	102																																																																																
MLH1	4292	MSKCC	GRCh37	3	37050349	37050349	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	90	237	0	ENST00000231790.2:c.503del	p.Asn168IlefsTer34	p.N168Ifs*34	ENST00000231790	NM_000249.3	166	ttA/tt																																																																															
MYD88	4615	MSKCC	GRCh37	3	38181390	38181390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	48	270	0	ENST00000396334.3:c.403C>G	p.Gln135Glu	p.Q135E	ENST00000396334	NM_002468.4	135	Cag/Gag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47158111	47158111	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	114	233	0	ENST00000409792.3:c.4586+2T>C		p.X1529_splice	ENST00000409792	NM_014159.6	1529																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52651313	52651313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	92	278	0	ENST00000394830.3:c.1783C>T	p.Arg595Trp	p.R595W	ENST00000394830	NM_018313.4	595	Cgg/Tgg																																																																															
BCL6	604	MSKCC	GRCh37	3	187447426	187447426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	129	426	1	ENST00000232014.4:c.767G>A	p.Ser256Asn	p.S256N	ENST00000232014	NM_001130845.1	256	aGc/aAc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980558	1980559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs752037034		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	123	446	9	ENST00000382891.5:c.4028dup	p.Glu1344ArgfsTer91	p.E1344Rfs*91	ENST00000382891	NM_133335.3	1340	-/C																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	72	160	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521346	187521346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	120	376	0	ENST00000441802.2:c.11809G>A	p.Ala3937Thr	p.A3937T	ENST00000441802	NM_005245.3	3937	Gcc/Acc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534269	187534269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	91	260	0	ENST00000441802.2:c.9457G>A	p.Asp3153Asn	p.D3153N	ENST00000441802	NM_005245.3	3153	Gac/Aac																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	258	321	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	19	121	0	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																															
APC	324	MSKCC	GRCh37	5	112176210	112176210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	102	278	0	ENST00000257430.4:c.4919G>A	p.Arg1640Gln	p.R1640Q	ENST00000257430	NM_000038.5	1640	cGg/cAg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117631305	117631305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	24	274	0	ENST00000368508.3:c.6373G>A	p.Val2125Ile	p.V2125I	ENST00000368508	NM_002944.2	2125	Gtt/Att																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	108	225	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146945	38146945	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	150	361	2	ENST00000317025.8:c.3197del	p.Asn1066ThrfsTer16	p.N1066Tfs*16	ENST00000317025	NM_023034.1	1066	aAc/ac																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	82	388	0	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69129903	69129903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	98	253	1	ENST00000288368.4:c.4657G>A	p.Gly1553Arg	p.G1553R	ENST00000288368	NM_024870.2	1553	Gga/Aga																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229625	98229625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	90	236	0	ENST00000331920.6:c.2333C>T	p.Thr778Met	p.T778M	ENST00000331920	NM_000264.3	778	aCg/aTg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564755	139564755	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	164	507	1	ENST00000308874.7:c.549del	p.Arg184GlyfsTer13	p.R184Gfs*13	ENST00000308874		182	Ccc/cc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918596	44918597	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	104	146	0	ENST00000377967.4:c.1083_1084del	p.Tyr362Ter	p.Y362*	ENST00000377967	NM_021140.2	360	aCT/a																																																																															
AR	367	MSKCC	GRCh37	X	66937449	66937449	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	141	199	0	ENST00000374690.3:c.2303A>G	p.Asp768Gly	p.D768G	ENST00000374690	NM_000044.3	768	gAt/gGt																																																																															
MED12	9968	MSKCC	GRCh37	X	70354588	70354588	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	145	162	0	ENST00000374080.3:c.4753A>G	p.Met1585Val	p.M1585V	ENST00000374080		1585	Atg/Gtg																																																																															
RARA	5914	MSKCC	GRCh37	17	38512376	38512377	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	69	443	0	ENST00000254066.5:c.1293dup	p.Arg432AlafsTer14	p.R432Afs*14	ENST00000254066	NM_000964.3	429	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0040601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	149	571	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	212	528	1	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	89	438	0	ENST00000342988.3:c.988G>C	p.Glu330Gln	p.E330Q	ENST00000342988	NM_005359.5	330	Gaa/Caa																																																																															
BTK	695	MSKCC	GRCh37	X	100611132	100611132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	147	593	0	ENST00000308731.7:c.1474C>T	p.Arg492Cys	p.R492C	ENST00000308731	NM_000061.2	492	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112174878	112174878	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	69	264	0	ENST00000257430.4:c.3587C>A	p.Ser1196Ter	p.S1196*	ENST00000257430	NM_000038.5	1196	tCa/tAa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16237614	16237614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	96	375	1	ENST00000375759.3:c.1061G>A	p.Gly354Asp	p.G354D	ENST00000375759	NM_015001.2	354	gGc/gAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793418	18793418	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	109	395	0	ENST00000266497.5:c.4115A>G	p.Tyr1372Cys	p.Y1372C	ENST00000266497		1372	tAt/tGt																																																																															
RHOA	387	MSKCC	GRCh37	3	49412907	49412907	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	138	625	0	ENST00000418115.1:c.116T>C	p.Phe39Ser	p.F39S	ENST00000418115	NM_001664.2	39	tTt/tCt																																																																															
APC	324	MSKCC	GRCh37	5	112116595	112116595	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	63	344	0	ENST00000257430.4:c.640del	p.Ala214HisfsTer5	p.A214Hfs*5	ENST00000257430	NM_000038.5	214	Gca/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0040654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	303	570	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	63	168	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250823	153250823	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0040654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	93	216	1	ENST00000281708.4:c.1236+1G>A		p.X412_splice	ENST00000281708	NM_033632.3	412																																																																																
CSF3R	1441	MSKCC	GRCh37	1	36939165	36939165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	215	592	0	ENST00000361632.4:c.544G>A	p.Gly182Arg	p.G182R	ENST00000361632		182	Ggg/Agg																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551943	150551943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	78	323	0	ENST00000369026.2:c.64G>A	p.Gly22Arg	p.G22R	ENST00000369026	NM_021960.4	22	Ggg/Agg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193104712	193104712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	91	290	0	ENST00000367435.3:c.416G>A	p.Arg139Gln	p.R139Q	ENST00000367435	NM_024529.4	139	cGa/cAa																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	71	280	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793710	89793710	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	142	404	0	ENST00000336032.3:c.779A>C	p.Lys260Thr	p.K260T	ENST00000336032	NM_006813.2	260	aAa/aCa																																																																															
MET	4233	MSKCC	GRCh37	7	116339746	116339746	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	125	389	0	ENST00000397752.3:c.608C>A	p.Ser203Tyr	p.S203Y	ENST00000397752	NM_000245.2	203	tCt/tAt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416138	416138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	114	362	0	ENST00000399788.2:c.4048C>T	p.Arg1350Ter	p.R1350*	ENST00000399788	NM_001042603.1	1350	Cga/Tga																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18573894	18573894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	85	345	0	ENST00000266497.5:c.2212C>T	p.Arg738Cys	p.R738C	ENST00000266497		738	Cgt/Tgt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61724120	61724120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	96	304	0	ENST00000401558.2:c.782G>A	p.Arg261Gln	p.R261Q	ENST00000401558	NM_003400.3	261	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112174802	112174802	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201830995		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	72	269	0	ENST00000257430.4:c.3511C>T	p.Arg1171Cys	p.R1171C	ENST00000257430	NM_000038.5	1171	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs879255270		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	368	610	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																															
KIT	3815	MSKCC	GRCh37	4	55597561	55597561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	113	446	1	ENST00000288135.5:c.2209G>A	p.Asp737Asn	p.D737N	ENST00000288135	NM_000222.2	737	Gac/Aac																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	22	337	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175060	112175060	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	52	219	0	ENST00000257430.4:c.3769G>T	p.Glu1257Ter	p.E1257*	ENST00000257430	NM_000038.5	1257	Gaa/Taa																																																																															
TP63	8626	MSKCC	GRCh37	3	189586502	189586502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	28	339	0	ENST00000264731.3:c.1126C>T	p.Arg376Cys	p.R376C	ENST00000264731	NM_003722.4	376	Cgc/Tgc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426812	121426812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	166	592	0	ENST00000257555.6:c.503G>A	p.Arg168His	p.R168H	ENST00000257555		168	cGc/cAc																																																																															
TP63	8626	MSKCC	GRCh37	3	189612028	189612028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	37	477	0	ENST00000264731.3:c.1780C>T	p.Arg594Ter	p.R594*	ENST00000264731	NM_003722.4	594	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576407	67576407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	40	301	0	ENST00000274335.5:c.686C>T	p.Ser229Leu	p.S229L	ENST00000274335		229	tCg/tTg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149457763	149457763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	101	634	0	ENST00000286301.3:c.641G>A	p.Arg214Gln	p.R214Q	ENST00000286301	NM_005211.3	214	cGg/cAg																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228613019	228613019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	100	419	2	ENST00000366696.1:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000366696	NM_003493.2	3	cGa/cAa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47698180	47698180	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	122	317	0	ENST00000233146.2:c.1738G>T	p.Glu580Ter	p.E580*	ENST00000233146	NM_000251.2	580	Gaa/Taa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672462	30672462	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148215318		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	246	742	2	ENST00000376406.3:c.4498G>A	p.Ala1500Thr	p.A1500T	ENST00000376406	NM_014641.2	1500	Gcc/Acc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38953624	38953624	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199645898		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	33	229	0	ENST00000357387.3:c.2729G>A	p.Arg910His	p.R910H	ENST00000357387	NM_152756.3	910	cGt/cAt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163542	32163542	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1187763031		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	120	665	0	ENST00000375023.3:c.5684C>T	p.Ser1895Phe	p.S1895F	ENST00000375023	NM_004557.3	1895	tCt/tTt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349799	89349799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	293	801	0	ENST00000301030.4:c.3151G>T	p.Glu1051Ter	p.E1051*	ENST00000301030	NM_001256183.1	1051	Gaa/Taa																																																																															
KDR	3791	MSKCC	GRCh37	4	55961059	55961059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	187	724	0	ENST00000263923.4:c.2881C>T	p.Arg961Trp	p.R961W	ENST00000263923	NM_002253.2	961	Cgg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944562	40944562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	41	462	0	ENST00000373198.4:c.1940C>T	p.Ser647Leu	p.S647L	ENST00000373198	NM_133170.3	647	tCg/tTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589618	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519838		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	89	283	0	ENST00000274335.5:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000274335		461	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624245	89624245	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	57	194	1	ENST00000371953.3:c.19G>T	p.Glu7Ter	p.E7*	ENST00000371953	NM_000314.4	7	Gag/Tag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99456431	99456431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	146	521	0	ENST00000268035.6:c.1748C>T	p.Ala583Val	p.A583V	ENST00000268035	NM_000875.3	583	gCt/gTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534356	187534356	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770029391		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	60	696	3	ENST00000441802.2:c.9370G>A	p.Glu3124Lys	p.E3124K	ENST00000441802	NM_005245.3	3124	Gaa/Aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539690	187539690	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	127	460	0	ENST00000441802.2:c.8050G>T	p.Glu2684Ter	p.E2684*	ENST00000441802	NM_005245.3	2684	Gaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108119819	108119819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	44	245	0	ENST00000278616.4:c.1225C>T	p.Leu409Phe	p.L409F	ENST00000278616	NM_000051.3	409	Ctt/Ttt																																																																															
MET	4233	MSKCC	GRCh37	7	116339799	116339799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	129	462	0	ENST00000397752.3:c.661G>A	p.Glu221Lys	p.E221K	ENST00000397752	NM_000245.2	221	Gaa/Aaa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027958	48027958	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	107	341	0	ENST00000234420.5:c.2836G>T	p.Glu946Ter	p.E946*	ENST00000234420	NM_000179.2	946	Gaa/Taa																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125503099	125503099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140276570		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	123	332	0	ENST00000428830.2:c.466C>T	p.Arg156Trp	p.R156W	ENST00000428830	NM_001114121.2	156	Cgg/Tgg																																																																															
SMO	6608	MSKCC	GRCh37	7	128845518	128845518	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748004767		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	81	731	0	ENST00000249373.3:c.815C>T	p.Ala272Val	p.A272V	ENST00000249373	NM_005631.4	272	gCg/gTg																																																																															
STK40	83931	MSKCC	GRCh37	1	36809476	36809476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	88	783	0	ENST00000373129.3:c.989C>T	p.Ala330Val	p.A330V	ENST00000373129	NM_032017.1	330	gCc/gTc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47684730	47684730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	93	381	0	ENST00000347630.2:c.719G>A	p.Arg240Gln	p.R240Q	ENST00000347630	NM_001007230.1	240	cGa/cAa																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008324	29008324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	68	288	0	ENST00000282397.4:c.547C>T	p.Arg183Cys	p.R183C	ENST00000282397	NM_002019.4	183	Cgc/Tgc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817871	3817871	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	158	469	0	ENST00000262367.5:c.3100G>T	p.Glu1034Ter	p.E1034*	ENST00000262367	NM_004380.2	1034	Gaa/Taa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50784011	50784011	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	201	634	0	ENST00000398568.2:c.402G>T	p.Gln134His	p.Q134H	ENST00000398568	NM_001042412.1	134	caG/caT																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712823	43712823	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28903077		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	247	842	2	ENST00000382044.4:c.4361G>A	p.Arg1454Gln	p.R1454Q	ENST00000382044	NM_001141980.1	1454	cGa/cAa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931826	68931826	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	52	597	0	ENST00000288368.4:c.256G>T	p.Glu86Ter	p.E86*	ENST00000288368	NM_024870.2	86	Gaa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884466	151884466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	116	333	0	ENST00000262189.6:c.4889C>T	p.Ser1630Leu	p.S1630L	ENST00000262189	NM_170606.2	1630	tCg/tTg																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793198	33793198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	27	126	1	ENST00000498907.2:c.123G>T	p.Gln41His	p.Q41H	ENST00000498907	NM_004364.3	41	caG/caT																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9783338	9783338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	141	573	0	ENST00000377346.4:c.2582C>T	p.Ser861Phe	p.S861F	ENST00000377346	NM_005026.3	861	tCc/tTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29556080	29556080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	80	260	0	ENST00000358273.4:c.2447G>A	p.Arg816Gln	p.R816Q	ENST00000358273	NM_001042492.2	816	cGa/cAa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945780	17945780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	81	861	1	ENST00000458235.1:c.2080G>A	p.Glu694Lys	p.E694K	ENST00000458235	NM_000215.3	694	Gag/Aag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696399	47696399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	162	577	0	ENST00000347630.2:c.424C>A	p.Leu142Ile	p.L142I	ENST00000347630	NM_001007230.1	142	Ctt/Att																																																																															
NUF2	83540	MSKCC	GRCh37	1	163297332	163297332	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	111	391	0	ENST00000271452.3:c.178C>T	p.Arg60Ter	p.R60*	ENST00000271452	NM_145697.2	60	Cga/Tga																																																																															
DDR2	4921	MSKCC	GRCh37	1	162750028	162750028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	107	341	0	ENST00000367921.3:c.2560G>A	p.Asp854Asn	p.D854N	ENST00000367921	NM_006182.2	854	Gac/Aac																																																																															
APC	324	MSKCC	GRCh37	5	112178969	112178969	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	82	300	0	ENST00000257430.4:c.7678C>T	p.Arg2560Ter	p.R2560*	ENST00000257430	NM_000038.5	2560	Cga/Tga																																																																															
HGF	3082	MSKCC	GRCh37	7	81359017	81359017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	44	492	0	ENST00000222390.5:c.944G>A	p.Gly315Asp	p.G315D	ENST00000222390	NM_000601.4	315	gGc/gAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117351	115117351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	33	318	0	ENST00000257566.3:c.823G>A	p.Glu275Lys	p.E275K	ENST00000257566	NM_016569.3	275	Gaa/Aaa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902622	1902622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	92	769	1	ENST00000382891.5:c.241G>T	p.Asp81Tyr	p.D81Y	ENST00000382891	NM_133335.3	81	Gat/Tat																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858351	9858351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	43	403	0	ENST00000330684.3:c.3050C>T	p.Ser1017Phe	p.S1017F	ENST00000330684	NM_001134407.1	1017	tCc/tTc																																																																															
HGF	3082	MSKCC	GRCh37	7	81350164	81350164	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	30	255	0	ENST00000222390.5:c.1169-1G>T		p.X390_splice	ENST00000222390	NM_000601.4	390																																																																																
BCL10	8915	MSKCC	GRCh37	1	85733524	85733524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	161	436	1	ENST00000370580.1:c.488C>T	p.Thr163Met	p.T163M	ENST00000370580	NM_003921.4	163	aCg/aTg																																																																															
CBL	867	MSKCC	GRCh37	11	119103322	119103322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	150	511	0	ENST00000264033.4:c.360G>T	p.Glu120Asp	p.E120D	ENST00000264033	NM_005188.3	120	gaG/gaT																																																																															
BCOR	54880	MSKCC	GRCh37	X	39911517	39911517	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	58	310	1	ENST00000378444.4:c.5113C>A	p.Leu1705Ile	p.L1705I	ENST00000378444	NM_001123385.1	1705	Ctc/Atc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965800	18965800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	53	807	0	ENST00000262803.5:c.1378C>T	p.Pro460Ser	p.P460S	ENST00000262803	NM_002911.3	460	Ccc/Tcc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53240738	53240738	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	235	350	0	ENST00000375401.3:c.1342G>T	p.Glu448Ter	p.E448*	ENST00000375401	NM_004187.3	448	Gaa/Taa																																																																															
BTK	695	MSKCC	GRCh37	X	100630190	100630190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	163	285	0	ENST00000308731.7:c.83G>A	p.Arg28His	p.R28H	ENST00000308731	NM_000061.2	28	cGc/cAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912733	32912733	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs70953664		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	50	447	0	ENST00000380152.3:c.4241C>T	p.Thr1414Met	p.T1414M	ENST00000380152		1414	aCg/aTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271691	15271691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	72	1001	0	ENST00000263388.2:c.6748G>A	p.Glu2250Lys	p.E2250K	ENST00000263388	NM_000435.2	2250	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112174590	112174590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	113	421	1	ENST00000257430.4:c.3299C>T	p.Ser1100Phe	p.S1100F	ENST00000257430	NM_000038.5	1100	tCt/tTt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523280	9523280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	180	590	1	ENST00000353224.5:c.1957C>T	p.Arg653Trp	p.R653W	ENST00000353224	NM_177990.2	653	Cgg/Tgg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46256431	46256431	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs72645252		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	35	475	1	ENST00000371998.3:c.659G>T	p.Arg220Ile	p.R220I	ENST00000371998		220	aGa/aTa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129839	55129839	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	97	429	0	ENST00000257290.5:c.373G>T	p.Asp125Tyr	p.D125Y	ENST00000257290	NM_006206.4	125	Gat/Tat																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39321554	39321554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	151	457	0	ENST00000373001.3:c.467G>T	p.Arg156Ile	p.R156I	ENST00000373001	NM_022157.3	156	aGa/aTa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65321352	65321352	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	124	624	0	ENST00000342505.4:c.1488G>T	p.Lys496Asn	p.K496N	ENST00000342505	NM_002227.2	496	aaG/aaT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69028055	69028055	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	42	500	0	ENST00000288368.4:c.3214G>T	p.Asp1072Tyr	p.D1072Y	ENST00000288368	NM_024870.2	1072	Gac/Tac																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63661997	63661997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	136	435	0	ENST00000279873.7:c.101G>A	p.Arg34Lys	p.R34K	ENST00000279873	NM_032199.2	34	aGa/aAa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685303	89685303	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	31	251	0	ENST00000371953.3:c.198G>T	p.Lys66Asn	p.K66N	ENST00000371953	NM_000314.4	66	aaG/aaT																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18719938	18719938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	117	395	0	ENST00000266497.5:c.3835G>T	p.Asp1279Tyr	p.D1279Y	ENST00000266497		1279	Gat/Tat																																																																															
TET1	80312	MSKCC	GRCh37	10	70332931	70332931	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	195	640	0	ENST00000373644.4:c.836C>A	p.Ser279Tyr	p.S279Y	ENST00000373644	NM_030625.2	279	tCt/tAt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266725	198266725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	58	487	0	ENST00000335508.6:c.2207G>A	p.Arg736His	p.R736H	ENST00000335508	NM_012433.2	736	cGc/cAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858064	9858064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	151	582	0	ENST00000330684.3:c.3337C>T	p.Pro1113Ser	p.P1113S	ENST00000330684	NM_001134407.1	1113	Cct/Tct																																																																															
POLE	5426	MSKCC	GRCh37	12	133250189	133250189	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	175	737	0	ENST00000320574.5:c.1331T>A	p.Met444Lys	p.M444K	ENST00000320574	NM_006231.2	444	aTg/aAg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291858	15291858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	106	956	0	ENST00000263388.2:c.2908C>T	p.Pro970Ser	p.P970S	ENST00000263388	NM_000435.2	970	Ccc/Tcc																																																																															
ATR	545	MSKCC	GRCh37	3	142266692	142266692	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	123	440	0	ENST00000350721.4:c.3232G>T	p.Glu1078Ter	p.E1078*	ENST00000350721	NM_001184.3	1078	Gaa/Taa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256028	16256028	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	198	600	0	ENST00000375759.3:c.3293A>C	p.Asn1098Thr	p.N1098T	ENST00000375759	NM_015001.2	1098	aAt/aCt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16264457	16264457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	206	791	0	ENST00000375759.3:c.10660C>T	p.Arg3554Trp	p.R3554W	ENST00000375759	NM_015001.2	3554	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100317	27100317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	67	664	0	ENST00000324856.7:c.4029C>A	p.Phe1343Leu	p.F1343L	ENST00000324856	NM_006015.4	1343	ttC/ttA																																																																															
AKT3	10000	MSKCC	GRCh37	1	243778403	243778403	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	96	365	0	ENST00000263826.5:c.622T>G	p.Leu208Val	p.L208V	ENST00000263826	NM_005465.4	208	Tta/Gta																																																																															
AKT3	10000	MSKCC	GRCh37	1	243859007	243859007	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	60	285	0	ENST00000263826.5:c.58A>C	p.Lys20Gln	p.K20Q	ENST00000263826	NM_005465.4	20	Aaa/Caa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851555	63851555	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	49	572	0	ENST00000279873.7:c.2333T>G	p.Leu778Arg	p.L778R	ENST00000279873	NM_032199.2	778	cTg/cGg																																																																															
TET1	80312	MSKCC	GRCh37	10	70411688	70411688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	98	373	0	ENST00000373644.4:c.4362G>T	p.Glu1454Asp	p.E1454D	ENST00000373644	NM_030625.2	1454	gaG/gaT																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720814	89720814	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	109	376	0	ENST00000371953.3:c.965A>C	p.Lys322Thr	p.K322T	ENST00000371953	NM_000314.4	322	aAa/aCa																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112771540	112771540	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	38	500	0	ENST00000369452.4:c.1713C>A	p.Phe571Leu	p.F571L	ENST00000369452	NM_007373.3	571	ttC/ttA																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711029	114711029	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	32	245	0	ENST00000543371.1:c.253G>T	p.Glu85Ter	p.E85*	ENST00000543371	NM_001198531.1	85	Gaa/Taa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94153304	94153304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	116	450	1	ENST00000323929.3:c.2114G>T	p.Arg705Ile	p.R705I	ENST00000323929	NM_005591.3	705	aGa/aTa																																																																															
ATM	472	MSKCC	GRCh37	11	108119694	108119694	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	59	192	0	ENST00000278616.4:c.1100C>A	p.Ser367Tyr	p.S367Y	ENST00000278616	NM_000051.3	367	tCt/tAt																																																																															
ATM	472	MSKCC	GRCh37	11	108235878	108235878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	32	414	2	ENST00000278616.4:c.8920C>T	p.Pro2974Ser	p.P2974S	ENST00000278616	NM_000051.3	2974	Ccg/Tcg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343217	118343217	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	46	389	0	ENST00000534358.1:c.1343A>C	p.Asn448Thr	p.N448T	ENST00000534358	NM_005933.3	448	aAt/aCt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118347543	118347543	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	67	442	0	ENST00000534358.1:c.3180G>T	p.Glu1060Asp	p.E1060D	ENST00000534358	NM_005933.3	1060	gaG/gaT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374685	118374685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	80	473	0	ENST00000534358.1:c.8078C>T	p.Ser2693Phe	p.S2693F	ENST00000534358	NM_005933.3	2693	tCt/tTt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	417156	417156	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	28	213	0	ENST00000399788.2:c.3394G>T	p.Glu1132Ter	p.E1132*	ENST00000399788	NM_001042603.1	1132	Gaa/Taa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435026	18435026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	29	247	1	ENST00000266497.5:c.11C>A	p.Ser4Tyr	p.S4Y	ENST00000266497		4	tCt/tAt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18443811	18443811	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	26	322	0	ENST00000266497.5:c.784G>T	p.Ala262Ser	p.A262S	ENST00000266497		262	Gct/Tct																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18656299	18656299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	117	416	0	ENST00000266497.5:c.2978C>A	p.Thr993Lys	p.T993K	ENST00000266497		993	aCa/aAa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793372	18793372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	93	367	1	ENST00000266497.5:c.4069G>T	p.Asp1357Tyr	p.D1357Y	ENST00000266497		1357	Gat/Tat																																																																															
ARID2	196528	MSKCC	GRCh37	12	46125011	46125011	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	57	251	1	ENST00000334344.6:c.198G>T	p.Lys66Asn	p.K66N	ENST00000334344	NM_152641.2	66	aaG/aaT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445815	49445815	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1255	93	1100	1	ENST00000301067.7:c.1651G>T	p.Glu551Ter	p.E551*	ENST00000301067	NM_003482.3	551	Gaa/Taa																																																																															
IGF1	3479	MSKCC	GRCh37	12	102869547	102869547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	165	535	0	ENST00000307046.8:c.94C>A	p.Leu32Ile	p.L32I	ENST00000307046	NM_001111285.1	32	Ctc/Atc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32899311	32899311	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	65	264	0	ENST00000380152.3:c.415C>A	p.Leu139Ile	p.L139I	ENST00000380152		139	Ctt/Att																																																																															
RB1	5925	MSKCC	GRCh37	13	48881473	48881473	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	72	244	0	ENST00000267163.4:c.195G>T	p.Lys65Asn	p.K65N	ENST00000267163	NM_000321.2	65	aaG/aaT																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103519172	103519172	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	36	371	0	ENST00000355739.4:c.2510A>G	p.Tyr837Cys	p.Y837C	ENST00000355739	NM_000123.3	837	tAt/tGt																																																																															
MGA	23269	MSKCC	GRCh37	15	42041995	42041995	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	94	565	0	ENST00000219905.7:c.6190G>T	p.Asp2064Tyr	p.D2064Y	ENST00000219905	NM_001164273.1	2064	Gat/Tat																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43739581	43739581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	105	371	0	ENST00000382044.4:c.2819G>T	p.Arg940Ile	p.R940I	ENST00000382044	NM_001141980.1	940	aGa/aTa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748837	43748837	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	224	819	0	ENST00000382044.4:c.1969G>T	p.Glu657Ter	p.E657*	ENST00000382044	NM_001141980.1	657	Gaa/Taa																																																																															
IDH2	3418	MSKCC	GRCh37	15	90633789	90633789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	120	759	0	ENST00000330062.3:c.295G>T	p.Asp99Tyr	p.D99Y	ENST00000330062	NM_002168.2	99	Gac/Tac																																																																															
BLM	641	MSKCC	GRCh37	15	91347493	91347493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	66	504	0	ENST00000355112.3:c.3655C>A	p.Leu1219Ile	p.L1219I	ENST00000355112	NM_000057.2	1219	Ctt/Att																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645417	67645417	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	51	422	0	ENST00000264010.4:c.682T>G	p.Phe228Val	p.F228V	ENST00000264010	NM_006565.3	228	Ttt/Gtt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828147	72828147	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	86	687	0	ENST00000268489.5:c.8434G>T	p.Asp2812Tyr	p.D2812Y	ENST00000268489	NM_006885.3	2812	Gac/Tac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829632	72829632	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	157	581	0	ENST00000268489.5:c.6949A>C	p.Asn2317His	p.N2317H	ENST00000268489	NM_006885.3	2317	Aat/Cat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830731	72830731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	55	636	1	ENST00000268489.5:c.5850G>T	p.Glu1950Asp	p.E1950D	ENST00000268489	NM_006885.3	1950	gaG/gaT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830944	72830944	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	31	484	0	ENST00000268489.5:c.5637A>C	p.Lys1879Asn	p.K1879N	ENST00000268489	NM_006885.3	1879	aaA/aaC																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993124	72993124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	245	877	1	ENST00000268489.5:c.921G>T	p.Met307Ile	p.M307I	ENST00000268489	NM_006885.3	307	atG/atT																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942121	81942121	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	51	638	0	ENST00000359376.3:c.1658A>G	p.Glu553Gly	p.E553G	ENST00000359376	NM_002661.3	553	gAg/gGg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40874924	40874924	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	170	555	0	ENST00000428826.2:c.376G>T	p.Glu126Ter	p.E126*	ENST00000428826		126	Gag/Tag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243658	41243658	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	45	590	0	ENST00000357654.3:c.3890C>A	p.Ser1297Tyr	p.S1297Y	ENST00000357654	NM_007294.3	1297	tCt/tAt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740684	58740684	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	182	603	0	ENST00000305921.3:c.1589C>A	p.Pro530His	p.P530H	ENST00000305921	NM_003620.3	530	cCt/cAt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619853	1619853	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	204	740	0	ENST00000344749.5:c.1094-1G>C		p.X365_splice	ENST00000344749	NM_001136139.2	365																																																																																
DOT1L	84444	MSKCC	GRCh37	19	2223306	2223306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	209	872	0	ENST00000398665.3:c.3417G>T	p.Glu1139Asp	p.E1139D	ENST00000398665	NM_032482.2	1139	gaG/gaT																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10254586	10254586	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	191	624	0	ENST00000340748.4:c.2924A>C	p.Lys975Thr	p.K975T	ENST00000340748		975	aAa/aCa																																																																															
UPF1	5976	MSKCC	GRCh37	19	18958592	18958592	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	245	710	0	ENST00000262803.5:c.411T>G	p.Cys137Trp	p.C137W	ENST00000262803	NM_002911.3	137	tgT/tgG																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52724238	52724238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	120	411	0	ENST00000322088.6:c.1370C>T	p.Ala457Val	p.A457V	ENST00000322088	NM_014225.5	457	gCc/gTc																																																																															
ALK	238	MSKCC	GRCh37	2	29446218	29446218	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	133	515	0	ENST00000389048.3:c.3349A>G	p.Thr1117Ala	p.T1117A	ENST00000389048	NM_004304.4	1117	Acc/Gcc																																																																															
REL	5966	MSKCC	GRCh37	2	61128157	61128157	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	64	303	0	ENST00000295025.8:c.333G>T	p.Lys111Asn	p.K111N	ENST00000295025	NM_002908.2	111	aaG/aaT																																																																															
PMS1	5378	MSKCC	GRCh37	2	190738322	190738322	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	30	331	0	ENST00000441310.2:c.2574A>C	p.Leu858Phe	p.L858F	ENST00000441310	NM_000534.4	858	ttA/ttC																																																																															
CASP8	841	MSKCC	GRCh37	2	202131209	202131209	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	94	347	0	ENST00000358485.4:c.177G>T	p.Lys59Asn	p.K59N	ENST00000358485	NM_001080125.1	59	aaG/aaT																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113162	209113162	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	52	369	0	ENST00000345146.2:c.345A>C	p.Lys115Asn	p.K115N	ENST00000345146	NM_005896.2	115	aaA/aaC																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662795	227662795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	81	873	0	ENST00000305123.5:c.660C>A	p.Phe220Leu	p.F220L	ENST00000305123	NM_005544.2	220	ttC/ttA																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024187	31024187	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	97	607	0	ENST00000375687.4:c.3672G>T	p.Arg1224Ser	p.R1224S	ENST00000375687	NM_015338.5	1224	agG/agT																																																																															
AURKA	6790	MSKCC	GRCh37	20	54956587	54956587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	79	442	0	ENST00000312783.6:c.607G>A	p.Ala203Thr	p.A203T	ENST00000312783	NM_198436.1	203	Gct/Act																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961583	54961583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	57	374	0	ENST00000312783.6:c.49G>A	p.Ala17Thr	p.A17T	ENST00000312783	NM_198436.1	17	Gct/Act																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125218	47125218	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	88	379	0	ENST00000409792.3:c.6052G>T	p.Asp2018Tyr	p.D2018Y	ENST00000409792	NM_014159.6	2018	Gac/Tac																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162109	47162109	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	89	371	0	ENST00000409792.3:c.4017G>T	p.Glu1339Asp	p.E1339D	ENST00000409792	NM_014159.6	1339	gaG/gaT																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390923	89390923	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	124	447	0	ENST00000336596.2:c.989G>T	p.Arg330Ile	p.R330I	ENST00000336596	NM_005233.5	330	aGa/aTa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521730	89521730	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	39	395	0	ENST00000336596.2:c.2807A>G	p.Glu936Gly	p.E936G	ENST00000336596	NM_005233.5	936	gAg/gGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938773	178938773	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	161	547	0	ENST00000263967.3:c.2016-1G>T		p.X672_splice	ENST00000263967	NM_006218.2	672																																																																																
MAP3K13	9175	MSKCC	GRCh37	3	185191002	185191002	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	263	831	0	ENST00000265026.3:c.1883A>G	p.Tyr628Cys	p.Y628C	ENST00000265026	NM_004721.4	628	tAc/tGc																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502367	186502367	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	49	354	0	ENST00000323963.5:c.90G>T	p.Glu30Asp	p.E30D	ENST00000323963		30	gaG/gaT																																																																															
BCL6	604	MSKCC	GRCh37	3	187444684	187444684	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	81	324	0	ENST00000232014.4:c.1543A>G	p.Asn515Asp	p.N515D	ENST00000232014	NM_001130845.1	515	Aac/Gac																																																																															
TP63	8626	MSKCC	GRCh37	3	189456541	189456541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	105	452	0	ENST00000264731.3:c.302C>T	p.Ser101Leu	p.S101L	ENST00000264731	NM_003722.4	101	tCg/tTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55956188	55956188	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	172	534	0	ENST00000263923.4:c.3127A>C	p.Lys1043Gln	p.K1043Q	ENST00000263923	NM_002253.2	1043	Aaa/Caa																																																																															
KDR	3791	MSKCC	GRCh37	4	55970907	55970907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	154	536	0	ENST00000263923.4:c.1890G>T	p.Lys630Asn	p.K630N	ENST00000263923	NM_002253.2	630	aaG/aaT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538311	187538311	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	154	506	0	ENST00000441802.2:c.8923G>T	p.Glu2975Ter	p.E2975*	ENST00000441802	NM_005245.3	2975	Gaa/Taa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630410	187630410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	230	717	0	ENST00000441802.2:c.572G>A	p.Arg191Gln	p.R191Q	ENST00000441802	NM_005245.3	191	cGa/cAa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754857	57754857	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	115	277	0	ENST00000274289.3:c.333A>C	p.Lys111Asn	p.K111N	ENST00000274289	NM_006622.3	111	aaA/aaC																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67575540	67575540	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	103	286	0	ENST00000274335.5:c.613G>T	p.Glu205Ter	p.E205*	ENST00000274335		205	Gaa/Taa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79961030	79961030	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138381683		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	54	499	0	ENST00000265081.6:c.427G>A	p.Asp143Asn	p.D143N	ENST00000265081	NM_002439.4	143	Gat/Aat																																																																															
MSH3	4437	MSKCC	GRCh37	5	79966033	79966033	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	149	506	0	ENST00000265081.6:c.697G>T	p.Glu233Ter	p.E233*	ENST00000265081	NM_002439.4	233	Gaa/Taa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86674356	86674356	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	27	210	0	ENST00000274376.6:c.2487+1G>T		p.X829_splice	ENST00000274376	NM_002890.2	829																																																																																
APC	324	MSKCC	GRCh37	5	112174893	112174893	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs730881247		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	89	247	0	ENST00000257430.4:c.3602C>A	p.Ser1201Ter	p.S1201*	ENST00000257430	NM_000038.5	1201	tCa/tAa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323147	31323147	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	55	769	0	ENST00000412585.2:c.842A>G	p.Tyr281Cys	p.Y281C	ENST00000412585	NM_005514.6	281	tAc/tGc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289208	33289208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	157	555	1	ENST00000374542.5:c.344G>A	p.Arg115Gln	p.R115Q	ENST00000374542	NM_001141970.1	115	cGg/cAg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120612	94120612	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	102	376	0	ENST00000369303.4:c.439G>T	p.Asp147Tyr	p.D147Y	ENST00000369303	NM_004440.3	147	Gac/Tac																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120862	94120862	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	118	450	0	ENST00000369303.4:c.189G>T	p.Glu63Asp	p.E63D	ENST00000369303	NM_004440.3	63	gaG/gaT																																																																															
HGF	3082	MSKCC	GRCh37	7	81374383	81374383	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	49	346	0	ENST00000222390.5:c.679G>T	p.Glu227Ter	p.E227*	ENST00000222390	NM_000601.4	227	Gaa/Taa																																																																															
MET	4233	MSKCC	GRCh37	7	116411869	116411869	+	intron_variant	Intron	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1492	39	1047	0	ENST00000397752.3:c.2888-34C>A		p.*963*	ENST00000397752	NM_000245.2																																																																																	
MET	4233	MSKCC	GRCh37	7	116412220	116412220	+	intron_variant	Intron	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1129	24	697	1	ENST00000397752.3:c.3028+177C>T		p.*1010*	ENST00000397752	NM_000245.2																																																																																	
KMT2C	58508	MSKCC	GRCh37	7	152012226	152012226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	52	410	0	ENST00000262189.6:c.587G>T	p.Arg196Ile	p.R196I	ENST00000262189	NM_170606.2	196	aGa/aTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132713	152132713	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	16	229	0	ENST00000262189.6:c.159G>T	p.Lys53Asn	p.K53N	ENST00000262189	NM_170606.2	53	aaG/aaT																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146156	38146156	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	248	771	0	ENST00000317025.8:c.3350G>T	p.Arg1117Ile	p.R1117I	ENST00000317025	NM_023034.1	1117	aGa/aTa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275504	38275504	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	52	573	0	ENST00000425967.3:c.1529T>G	p.Val510Gly	p.V510G	ENST00000425967	NM_001174067.1	510	gTc/gGc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141561499	141561499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	166	586	0	ENST00000220592.5:c.1306G>A	p.Asp436Asn	p.D436N	ENST00000220592	NM_012154.3	436	Gac/Aac																																																																															
JAK2	3717	MSKCC	GRCh37	9	5022093	5022093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	72	493	0	ENST00000381652.3:c.106G>T	p.Asp36Tyr	p.D36Y	ENST00000381652	NM_004972.3	36	Gat/Tat																																																																															
TEK	7010	MSKCC	GRCh37	9	27202846	27202846	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	63	424	0	ENST00000380036.4:c.1938G>T	p.Lys646Asn	p.K646N	ENST00000380036	NM_000459.3	646	aaG/aaT																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900268	101900268	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	120	418	0	ENST00000374994.4:c.702C>A	p.Phe234Leu	p.F234L	ENST00000374994	NM_004612.2	234	ttC/ttA																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44941842	44941842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	117	194	0	ENST00000377967.4:c.3166C>A	p.His1056Asn	p.H1056N	ENST00000377967	NM_021140.2	1056	Cat/Aat																																																																															
AR	367	MSKCC	GRCh37	X	66942713	66942713	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	140	243	0	ENST00000374690.3:c.2494C>T	p.Arg832Ter	p.R832*	ENST00000374690	NM_000044.3	832	Cga/Tga																																																																															
BTK	695	MSKCC	GRCh37	X	100612572	100612572	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	38	181	0	ENST00000308731.7:c.1103-1G>A		p.X368_splice	ENST00000308731	NM_000061.2	368																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0040948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	563	891	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604778	48604778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767383		P-0040948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	212	511	2	ENST00000342988.3:c.1600C>T	p.Gln534Ter	p.Q534*	ENST00000342988	NM_005359.5	534	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0040948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	231	527	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877391	40877391	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372713520		P-0040948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	307	740	0	ENST00000373198.4:c.2305G>A	p.Val769Met	p.V769M	ENST00000373198	NM_133170.3	769	Gtg/Atg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518246	8518246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	44	421	0	ENST00000356435.5:c.1145G>A	p.Gly382Glu	p.G382E	ENST00000356435		382	gGa/gAa																																																																															
RET	5979	MSKCC	GRCh37	10	43622038	43622038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	169	492	0	ENST00000355710.3:c.3055G>A	p.Ala1019Thr	p.A1019T	ENST00000355710	NM_020975.4	1019	Gcg/Acg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133685	41133685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	52	482	0	ENST00000379561.5:c.1943C>T	p.Thr648Met	p.T648M	ENST00000379561	NM_002015.3	648	aCg/aTg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78433310	78433310	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0041391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	82	368	1	ENST00000370768.2:c.290+1G>A		p.X97_splice	ENST00000370768	NM_003902.3	97																																																																																
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0041391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	138	320	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982989	201982990	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	348	790	0	ENST00000359651.3:c.841dup	p.Asp281GlyfsTer20	p.D281Gfs*20	ENST00000359651		280	cgg/cGgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32905124	32905127	+	frameshift_variant	Frame_Shift_Del	DEL	GACA	GACA	-	rs1455701926		P-0041391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	53	391	0	ENST00000380152.3:c.755_758del	p.Asp252ValfsTer24	p.D252Vfs*24	ENST00000380152		250	gtGACA/gt																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023193	33023193	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	258	499	0	ENST00000300177.4:c.302A>C	p.Gln101Pro	p.Q101P	ENST00000300177	NM_001191322.1	101	cAg/cCg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43738759	43738759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	152	462	0	ENST00000382044.4:c.2866G>A	p.Ala956Thr	p.A956T	ENST00000382044	NM_001141980.1	956	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0041391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	317	725	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SRC	6714	MSKCC	GRCh37	20	36024598	36024598	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1152	184	748	0	ENST00000358208.4:c.587A>G	p.Asn196Ser	p.N196S	ENST00000358208		196	aAc/aGc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72866404	72866404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	26	320	0	ENST00000325599.8:c.859C>T	p.Arg287Cys	p.R287C	ENST00000325599	NM_018130.2	287	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0041391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	101	327	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425977	49425977	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	259	700	0	ENST00000301067.7:c.12511C>T	p.Gln4171Ter	p.Q4171*	ENST00000301067	NM_003482.3	4171	Caa/Taa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0041696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	76	404	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0041696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	258	940	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29528489	29528489	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	66	422	0	ENST00000358273.4:c.1246C>T	p.Arg416Ter	p.R416*	ENST00000358273	NM_001042492.2	416	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437531	56437531	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	199	807	0	ENST00000407977.2:c.931del	p.Leu311SerfsTer108	p.L311Sfs*108	ENST00000407977		311	Ctc/tc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644781	67644781	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	62	515	2	ENST00000264010.4:c.46T>C	p.Phe16Leu	p.F16L	ENST00000264010	NM_006565.3	16	Ttt/Ctt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0043235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	129	759	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206648230	206648230	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	125	624	0	ENST00000367120.3:c.251T>A	p.Leu84Gln	p.L84Q	ENST00000367120	NM_014002.3	84	cTg/cAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653862	89653866	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GTAAG	GTAAG	-			P-0043235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	50	438	0	ENST00000371953.3:c.164+1_164+5del		p.VR54fs	ENST00000371953	NM_000314.4	54	GTAAGg/g																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0043293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	78	375	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	311	769	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0043293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	178	692	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593426	48593426	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	156	489	0	ENST00000342988.3:c.1178del	p.Gly393ValfsTer22	p.G393Vfs*22	ENST00000342988	NM_005359.5	393	Ggt/gt																																																																															
APC	324	MSKCC	GRCh37	5	112173306	112173317	+	frameshift_variant	Frame_Shift_Del	DEL	ATAGTTTGACAA	ATAGTTTGACAA	T			P-0043293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	53	247	0	ENST00000257430.4:c.2015_2026delinsT	p.His672LeufsTer4	p.H672Lfs*4	ENST00000257430	NM_000038.5	672	cATAGTTTGACAAta/cTta																																																																															
APC	324	MSKCC	GRCh37	5	112175595	112175600	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGTA	GAAGTA	AAAGT			P-0043293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	146	444	2	ENST00000257430.4:c.4304_4309delinsAAAGT	p.Arg1435LysfsTer38	p.R1435Kfs*38	ENST00000257430	NM_000038.5	1435	aGAAGTAaa/aAAAGTaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0043555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	408	748	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123310820	123310820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	138	613	3	ENST00000358487.5:c.608G>A	p.Arg203His	p.R203H	ENST00000358487	NM_000141.4	203	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0043555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	63	348	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857910	9857910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	211	674	0	ENST00000330684.3:c.3491C>T	p.Thr1164Met	p.T1164M	ENST00000330684	NM_001134407.1	1164	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0043555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	131	425	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117964	70117965	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0043555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	163	348	0	ENST00000245479.2:c.431+2dup		p.X144_splice	ENST00000245479	NM_000346.3	144																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114925316	114925317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769592153		P-0043555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	250	422	20	ENST00000543371.1:c.1403dup	p.Cys469ValfsTer8	p.C469Vfs*8	ENST00000543371	NM_001198531.1	465	aga/agAa																																																																															
APC	324	MSKCC	GRCh37	5	112162945	112162945	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs1114167599		P-0043555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	92	364	0	ENST00000257430.4:c.1548+1G>T		p.X516_splice	ENST00000257430	NM_000038.5	516																																																																																
LATS2	26524	MSKCC	GRCh37	13	21563428	21563428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	351	831	0	ENST00000382592.4:c.491C>T	p.Pro164Leu	p.P164L	ENST00000382592	NM_014572.2	164	cCa/cTa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894961	101895339	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCAGAGGGTACTACGTTGAAAGACTTAATTTATGATATGACAACGTCAGGTTCTGGCTCAGGTAACATAATTGTTTCTCCTTTTTCCTAAGACATCTTTTTAAAATTAAGCGATACTTATTTTATTAGTTTTCTAATAAGCCAACTTGCTAGAATGTGAGATAGTATAAATAATATTGCAGGTTTGAACCTAATAAAAATCTTTAAGCTTGATGTATATATGACTGTGGCTGGTTTAAAATAGATTGGAACTTAACTTTAACTGTTAAAGCGAATCAATAAGTCAGCTCCATGGTGGTATAAATTTCAAAGCGTTCTCACTTGTATAATCTAATTTGCTTTTCATCACTGTGAGGTAGAAAGGATAAGAACAATTATTC	TCAGAGGGTACTACGTTGAAAGACTTAATTTATGATATGACAACGTCAGGTTCTGGCTCAGGTAACATAATTGTTTCTCCTTTTTCCTAAGACATCTTTTTAAAATTAAGCGATACTTATTTTATTAGTTTTCTAATAAGCCAACTTGCTAGAATGTGAGATAGTATAAATAATATTGCAGGTTTGAACCTAATAAAAATCTTTAAGCTTGATGTATATATGACTGTGGCTGGTTTAAAATAGATTGGAACTTAACTTTAACTGTTAAAGCGAATCAATAAGTCAGCTCCATGGTGGTATAAATTTCAAAGCGTTCTCACTTGTATAATCTAATTTGCTTTTCATCACTGTGAGGTAGAAAGGATAAGAACAATTATTC	-			P-0043555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	50	338	0	ENST00000374994.4:c.517_574+321del		p.X173_splice	ENST00000374994	NM_004612.2	173																																																																																
SYK	6850	MSKCC	GRCh37	9	93650109	93650109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	40	525	0	ENST00000375746.1:c.1660G>A	p.Asp554Asn	p.D554N	ENST00000375746	NM_001174167.1	554	Gat/Aat																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	222	728	9	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274172	10274173	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	65	558	0	ENST00000330684.3:c.96dup	p.Ala33ArgfsTer105	p.A33Rfs*105	ENST00000330684	NM_001134407.1	32	-/C																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	105	830	3	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	114	870	5	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874637	35874637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	48	389	1	ENST00000303115.3:c.799del	p.Arg267GlyfsTer28	p.R267Gfs*28	ENST00000303115	NM_002185.3	265	Aaa/aa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	81	654	2	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
INSR	3643	MSKCC	GRCh37	19	7142913	7142913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	150	744	2	ENST00000302850.5:c.2456G>A	p.Arg819His	p.R819H	ENST00000302850	NM_000208.2	819	cGc/cAc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6043349	6043349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	24	213	0	ENST00000265849.7:c.325del	p.Glu109LysfsTer3	p.E109Kfs*3	ENST00000265849	NM_000535.5	109	Gaa/aa																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363570	40363570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	100	653	0	ENST00000397332.2:c.659C>T	p.Thr220Met	p.T220M	ENST00000397332	NM_001033082.2	220	aCg/aTg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225346714	225346714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	74	383	0	ENST00000264414.4:c.1924C>T	p.Arg642Trp	p.R642W	ENST00000264414	NM_003590.4	642	Cgg/Tgg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902143	50902143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	97	709	0	ENST00000440232.2:c.35G>A	p.Gly12Glu	p.G12E	ENST00000440232	NM_002691.3	12	gGg/gAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025857	48025857	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1472949451		P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	20	342	1	ENST00000234420.5:c.741del	p.Lys247AsnfsTer32	p.K247Nfs*32	ENST00000234420	NM_000179.2	245	atA/at																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	72	372	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324711	31324711	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs2596492		P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	10	106	2	ENST00000412585.2:c.97T>C	p.Tyr33His	p.Y33H	ENST00000412585	NM_005514.6	33	Tac/Cac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248366	212248366	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	29	281	0	ENST00000342788.4:c.3901T>C	p.Tyr1301His	p.Y1301H	ENST00000342788	NM_005235.2	1301	Tac/Cac																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24134057	24134057	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	74	490	0	ENST00000263121.7:c.214del	p.Thr72GlnfsTer13	p.T72Qfs*13	ENST00000263121	NM_003073.3	70	Aaa/aa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883113	37883113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	46	822	1	ENST00000269571.5:c.3016C>T	p.Arg1006Cys	p.R1006C	ENST00000269571		1006	Cgc/Tgc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777677	9777677	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145191685		P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	127	676	0	ENST00000377346.4:c.1013G>A	p.Arg338Gln	p.R338Q	ENST00000377346	NM_005026.3	338	cGg/cAg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464961	120464961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	110	516	0	ENST00000256646.2:c.5111G>A	p.Arg1704His	p.R1704H	ENST00000256646	NM_024408.3	1704	cGt/cAt																																																																															
SUFU	51684	MSKCC	GRCh37	10	104356980	104356981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1477199832		P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	74	625	1	ENST00000369902.3:c.846dup	p.Glu283ArgfsTer3	p.E283Rfs*3	ENST00000369902	NM_016169.3	280	-/C																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222522	2222523	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1370428257		P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	109	778	0	ENST00000326181.6:c.722dup	p.Leu242AlafsTer55	p.L242Afs*55	ENST00000326181	NM_032271.2	239	tgc/tgCc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462033	120462033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	128	598	0	ENST00000256646.2:c.5683C>T	p.Arg1895Cys	p.R1895C	ENST00000256646	NM_024408.3	1895	Cgt/Tgt																																																																															
MPL	4352	MSKCC	GRCh37	1	43817931	43817931	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3820551		P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	120	674	0	ENST00000372470.3:c.1610G>A	p.Arg537Gln	p.R537Q	ENST00000372470	NM_005373.2	537	cGg/cAg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40858053	40858053	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	99	696	3	ENST00000428826.2:c.1811del	p.Asn604ThrfsTer26	p.N604Tfs*26	ENST00000428826		604	aAc/ac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425694	49425694	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	66	783	0	ENST00000301067.7:c.12794del	p.Gly4265AlafsTer13	p.G4265Afs*13	ENST00000301067	NM_003482.3	4265	gGc/gc																																																																															
CD276	80381	MSKCC	GRCh37	15	73994595	73994595	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	102	821	1	ENST00000318443.5:c.80-1G>T		p.X27_splice	ENST00000318443	NM_001024736.1	27																																																																																
RB1	5925	MSKCC	GRCh37	13	49039341	49039341	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	87	495	0	ENST00000267163.4:c.2330del	p.Pro777LeufsTer33	p.P777Lfs*33	ENST00000267163	NM_000321.2	776	Ccc/cc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16235956	16235956	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	48	479	0	ENST00000375759.3:c.1022A>G	p.Asn341Ser	p.N341S	ENST00000375759	NM_015001.2	341	aAt/aGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023382	27023382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	75	312	0	ENST00000324856.7:c.488C>T	p.Ala163Val	p.A163V	ENST00000324856	NM_006015.4	163	gCc/gTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089631	27089631	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	45	688	0	ENST00000324856.7:c.2587A>G	p.Met863Val	p.M863V	ENST00000324856	NM_006015.4	863	Atg/Gtg																																																																															
STK40	83931	MSKCC	GRCh37	1	36821036	36821036	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	52	552	0	ENST00000373129.3:c.343-2A>G		p.X115_splice	ENST00000373129	NM_032017.1	115																																																																																
ELF3	1999	MSKCC	GRCh37	1	201981102	201981102	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	140	606	0	ENST00000359651.3:c.181G>T	p.Gly61Trp	p.G61W	ENST00000359651		61	Ggg/Tgg																																																																															
PARP1	142	MSKCC	GRCh37	1	226573302	226573302	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	99	598	0	ENST00000366794.5:c.914A>G	p.Lys305Arg	p.K305R	ENST00000366794	NM_001618.3	305	aAg/aGg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999555	100999555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	75	951	1	ENST00000325455.5:c.247G>A	p.Val83Met	p.V83M	ENST00000325455	NM_001202474.3	83	Gtg/Atg																																																																															
YAP1	10413	MSKCC	GRCh37	11	102100538	102100538	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	105	596	0	ENST00000282441.5:c.1382A>G	p.Asp461Gly	p.D461G	ENST00000282441	NM_001130145.2	461	gAt/gGt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344035	118344035	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	57	349	0	ENST00000534358.1:c.2161C>T	p.Arg721Ter	p.R721*	ENST00000534358	NM_005933.3	721	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118348780	118348780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	61	412	0	ENST00000534358.1:c.3433C>T	p.Pro1145Ser	p.P1145S	ENST00000534358	NM_005933.3	1145	Cca/Tca																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870870	12870871	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	53	296	0	ENST00000228872.4:c.97_98del	p.Phe33ArgfsTer91	p.F33Rfs*91	ENST00000228872	NM_004064.3	33	TTc/c																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641423	18641423	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	45	288	0	ENST00000266497.5:c.2422T>C	p.Trp808Arg	p.W808R	ENST00000266497		808	Tgg/Cgg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21628710	21628710	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	75	443	0	ENST00000421138.2:c.998G>C	p.Ser333Thr	p.S333T	ENST00000421138		333	aGt/aCt																																																																															
POLE	5426	MSKCC	GRCh37	12	133219917	133219917	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	75	686	0	ENST00000320574.5:c.4445-1G>T		p.X1482_splice	ENST00000320574	NM_006231.2	1482																																																																																
LATS2	26524	MSKCC	GRCh37	13	21562304	21562304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	46	749	1	ENST00000382592.4:c.1615G>T	p.Gly539Cys	p.G539C	ENST00000382592	NM_014572.2	539	Ggc/Tgc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582025	95582025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	28	315	0	ENST00000343455.3:c.1886C>T	p.Thr629Met	p.T629M	ENST00000343455	NM_177438.2	629	aCg/aTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857778	9857778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	91	628	1	ENST00000330684.3:c.3623G>A	p.Arg1208Gln	p.R1208Q	ENST00000330684	NM_001134407.1	1208	cGg/cAg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858570	9858570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	57	527	1	ENST00000330684.3:c.2831C>T	p.Ser944Leu	p.S944L	ENST00000330684	NM_001134407.1	944	tCa/tTa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862851	9862851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	111	635	0	ENST00000330684.3:c.2452G>A	p.Ala818Thr	p.A818T	ENST00000330684	NM_001134407.1	818	Gcg/Acg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56875671	56875671	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	96	623	1	ENST00000308159.5:c.2275C>T	p.Gln759Ter	p.Q759*	ENST00000308159	NM_014669.4	759	Cag/Tag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350668	89350668	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	99	743	0	ENST00000301030.4:c.2282A>G	p.Tyr761Cys	p.Y761C	ENST00000301030	NM_001256183.1	761	tAc/tGc																																																																															
NF1	4763	MSKCC	GRCh37	17	29679292	29679292	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	64	332	0	ENST00000358273.4:c.7475A>G	p.Gln2492Arg	p.Q2492R	ENST00000358273	NM_001042492.2	2492	cAg/cGg																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73775028	73775028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	79	457	0	ENST00000254810.4:c.145C>T	p.Leu49Phe	p.L49F	ENST00000254810	NM_005324.3	49	Ctt/Ttt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56401607	56401607	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	48	387	0	ENST00000348428.3:c.1469A>G	p.Tyr490Cys	p.Y490C	ENST00000348428	NM_006785.3	490	tAt/tGt																																																																															
GNA11	2767	MSKCC	GRCh37	19	3119267	3119267	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	53	827	0	ENST00000078429.4:c.799T>C	p.Ser267Pro	p.S267P	ENST00000078429	NM_002067.2	267	Tcc/Ccc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15278179	15278179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	118	773	0	ENST00000263388.2:c.5243G>A	p.Arg1748His	p.R1748H	ENST00000263388	NM_000435.2	1748	cGt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224536	36224536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	117	927	1	ENST00000222270.7:c.6998G>A	p.Gly2333Glu	p.G2333E	ENST00000222270	NM_014727.1	2333	gGg/gAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228554	36228554	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	69	738	0	ENST00000222270.7:c.7568T>C	p.Met2523Thr	p.M2523T	ENST00000222270	NM_014727.1	2523	aTg/aCg																																																																															
AXL	558	MSKCC	GRCh37	19	41727854	41727854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	104	805	0	ENST00000301178.4:c.479G>A	p.Cys160Tyr	p.C160Y	ENST00000301178	NM_021913.4	160	tGc/tAc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026800	48026800	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	51	489	0	ENST00000234420.5:c.1678T>C	p.Phe560Leu	p.F560L	ENST00000234420	NM_000179.2	560	Ttt/Ctt																																																																															
PMS1	5378	MSKCC	GRCh37	2	190738360	190738360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	16	216	0	ENST00000441310.2:c.2612G>A	p.Arg871His	p.R871H	ENST00000441310	NM_000534.4	871	cGc/cAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212578329	212578329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	36	412	0	ENST00000342788.4:c.928A>G	p.Ser310Gly	p.S310G	ENST00000342788	NM_005235.2	310	Agt/Ggt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661941	227661941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	111	720	0	ENST00000305123.5:c.1514C>T	p.Ala505Val	p.A505V	ENST00000305123	NM_005544.2	505	gCc/gTc																																																																															
EP300	2033	MSKCC	GRCh37	22	41553272	41553272	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	94	585	0	ENST00000263253.7:c.3361A>G	p.Ile1121Val	p.I1121V	ENST00000263253	NM_001429.3	1121	Att/Gtt																																																																															
EP300	2033	MSKCC	GRCh37	22	41574584	41574584	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	75	838	0	ENST00000263253.7:c.6869A>G	p.Gln2290Arg	p.Q2290R	ENST00000263253	NM_001429.3	2290	cAg/cGg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47061293	47061293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	70	428	0	ENST00000409792.3:c.7388C>T	p.Ser2463Phe	p.S2463F	ENST00000409792	NM_014159.6	2463	tCc/tTc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185190870	185190870	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	53	696	0	ENST00000265026.3:c.1751A>G	p.Tyr584Cys	p.Y584C	ENST00000265026	NM_004721.4	584	tAt/tGt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66233098	66233098	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	55	375	0	ENST00000273854.3:c.1901A>G	p.Lys634Arg	p.K634R	ENST00000273854	NM_004439.5	634	aAg/aGg																																																																															
APC	324	MSKCC	GRCh37	5	112178384	112178384	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	49	371	0	ENST00000257430.4:c.7093T>C	p.Ser2365Pro	p.S2365P	ENST00000257430	NM_000038.5	2365	Tca/Cca																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449520	149449520	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	136	729	0	ENST00000286301.3:c.1426A>G	p.Thr476Ala	p.T476A	ENST00000286301	NM_005211.3	476	Acc/Gcc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120825	94120826	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	130	483	0	ENST00000369303.4:c.225dup	p.Val76SerfsTer13	p.V76Sfs*13	ENST00000369303	NM_004440.3	75	-/A																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200408	138200408	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	122	671	1	ENST00000237289.4:c.1826A>G	p.Lys609Arg	p.K609R	ENST00000237289	NM_001270507.1	609	aAa/aGa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405929	157405929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	87	599	0	ENST00000346085.5:c.2171C>T	p.Ala724Val	p.A724V	ENST00000346085	NM_020732.3	724	gCg/gTg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772052	135772052	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	75	572	0	ENST00000298552.3:c.3065G>T	p.Arg1022Met	p.R1022M	ENST00000298552	NM_001162426.1	1022	aGg/aTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412207	139412207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	39	639	0	ENST00000277541.6:c.1438C>T	p.Pro480Ser	p.P480S	ENST00000277541	NM_017617.3	480	Ccc/Tcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	41	351	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	59	474	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	45	335	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120232	70120232	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1205	256	639	0	ENST00000245479.2:c.1234C>T	p.Gln412Ter	p.Q412*	ENST00000245479	NM_000346.3	412	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	90	327	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	171	620	0	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	65	373	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
B2M	567	MSKCC	GRCh37	15	45003746	45003746	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	188	456	0	ENST00000558401.1:c.2T>C	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	aTg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	219	695	0	ENST00000269305.4:c.523C>T	p.Arg175Cys	p.R175C	ENST00000269305	NM_001126112.2	175	Cgc/Tgc																																																																															
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	88	375	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3790455	3790455	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	208	593	3	ENST00000262367.5:c.4078C>T	p.Arg1360Ter	p.R1360*	ENST00000262367	NM_004380.2	1360	Cga/Tga																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136949	64136949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	203	555	0	ENST00000334205.4:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000334205	NM_003942.2	487	cGg/cAg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	156	445	1	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411291	63411291	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	255	369	1	ENST00000330258.3:c.1876C>T	p.Arg626Ter	p.R626*	ENST00000330258	NM_152424.3	626	Cga/Tga																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004247	150004247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	26	298	0	ENST00000253339.5:c.1978C>T	p.Arg660Cys	p.R660C	ENST00000253339		660	Cgt/Tgt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119758	70119758	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	192	625	0	ENST00000245479.2:c.760C>T	p.Arg254Ter	p.R254*	ENST00000245479	NM_000346.3	254	Cga/Tga																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44520566	44520566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	118	351	0	ENST00000291552.4:c.196C>T	p.Arg66Cys	p.R66C	ENST00000291552	NM_006758.2	66	Cgc/Tgc																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945048	31945048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1129	236	677	1	ENST00000340398.3:c.53G>A	p.Arg18His	p.R18H	ENST00000340398	NM_001013699.2	18	cGc/cAc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905324	50905324	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1241	252	840	6	ENST00000440232.2:c.537del	p.Arg180GlyfsTer3	p.R180Gfs*3	ENST00000440232	NM_002691.3	178	Ggg/gg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99203950	99203950	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755469992		P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	64	353	0	ENST00000074304.5:c.2813G>A	p.Arg938Gln	p.R938Q	ENST00000074304	NM_001134224.1	938	cGa/cAa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719724	61719724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	50	546	0	ENST00000401558.2:c.1544G>A	p.Arg515Gln	p.R515Q	ENST00000401558	NM_003400.3	515	cGa/cAa																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24159112	24159112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	150	416	1	ENST00000263121.7:c.784G>A	p.Val262Ile	p.V262I	ENST00000263121	NM_003073.3	262	Gtc/Atc																																																																															
B2M	567	MSKCC	GRCh37	15	45007752	45007753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	73	410	0	ENST00000558401.1:c.204dup	p.Val69SerfsTer21	p.V69Sfs*21	ENST00000558401	NM_004048.2	67	gaa/gAaa																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856595	111856595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	122	144	0	ENST00000341259.2:c.646C>T	p.Arg216Cys	p.R216C	ENST00000341259	NM_005475.2	216	Cgc/Tgc																																																																															
SYK	6850	MSKCC	GRCh37	9	93637062	93637062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	169	501	0	ENST00000375746.1:c.1112C>T	p.Thr371Met	p.T371M	ENST00000375746	NM_001174167.1	371	aCg/aTg																																																																															
ABL1	25	MSKCC	GRCh37	9	133738315	133738315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	220	569	1	ENST00000318560.5:c.715C>T	p.Arg239Cys	p.R239C	ENST00000318560	NM_005157.4	239	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210893	36210893	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1206	246	761	4	ENST00000222270.7:c.649del	p.Arg217GlyfsTer22	p.R217Gfs*22	ENST00000222270	NM_014727.1	215	aCc/ac																																																																															
ABL1	25	MSKCC	GRCh37	9	133759395	133759395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	212	651	0	ENST00000318560.5:c.1718C>T	p.Pro573Leu	p.P573L	ENST00000318560	NM_005157.4	573	cCt/cTt																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140172	50140172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	169	541	0	ENST00000246792.3:c.253G>A	p.Ala85Thr	p.A85T	ENST00000246792	NM_006270.3	85	Gcg/Acg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12633207	12633207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	154	502	0	ENST00000251849.4:c.1193G>T	p.Arg398Leu	p.R398L	ENST00000251849	NM_002880.3	398	cGc/cTc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528952	157528952	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1263114512		P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	143	468	1	ENST00000346085.5:c.6677C>T	p.Ser2226Leu	p.S2226L	ENST00000346085	NM_020732.3	2226	tCg/tTg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741660	17741660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	166	348	2	ENST00000250003.3:c.331C>T	p.Arg111Cys	p.R111C	ENST00000250003	NM_002478.4	111	Cgc/Tgc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246518359	246518359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	82	418	0	ENST00000388985.4:c.202G>A	p.Ala68Thr	p.A68T	ENST00000388985		68	Gcc/Acc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745596	162745596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	105	490	0	ENST00000367921.3:c.2011C>T	p.Pro671Ser	p.P671S	ENST00000367921	NM_006182.2	671	Ccc/Tcc																																																																															
KDR	3791	MSKCC	GRCh37	4	55964400	55964400	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149212892		P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	113	496	0	ENST00000263923.4:c.2413G>A	p.Val805Ile	p.V805I	ENST00000263923	NM_002253.2	805	Gtc/Atc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356406	66356406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	57	388	0	ENST00000273854.3:c.1091C>T	p.Ala364Val	p.A364V	ENST00000273854	NM_004439.5	364	gCc/gTc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729709	41729709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	177	589	0	ENST00000242208.4:c.820G>A	p.Gly274Arg	p.G274R	ENST00000242208	NM_002192.2	274	Gga/Aga																																																																															
SESN2	83667	MSKCC	GRCh37	1	28586359	28586359	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	132	514	0	ENST00000253063.3:c.1A>G	p.Met1?	p.M1?	ENST00000253063	NM_031459.4	1	Atg/Gtg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430375	78430375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	68	425	0	ENST00000370768.2:c.793C>T	p.Arg265Trp	p.R265W	ENST00000370768	NM_003902.3	265	Cgg/Tgg																																																																															
RET	5979	MSKCC	GRCh37	10	43600424	43600424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	177	546	0	ENST00000355710.3:c.650C>T	p.Ala217Val	p.A217V	ENST00000355710	NM_020975.4	217	gCc/gTc																																																																															
TET1	80312	MSKCC	GRCh37	10	70333485	70333485	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	111	533	0	ENST00000373644.4:c.1390G>T	p.Gly464Cys	p.G464C	ENST00000373644	NM_030625.2	464	Ggt/Tgt																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67201718	67201718	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199570304		P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	160	564	0	ENST00000312629.5:c.1019G>A	p.Arg340His	p.R340H	ENST00000312629	NM_003952.2	340	cGt/cAt																																																																															
SETD8	387893	MSKCC	GRCh37	12	123879659	123879659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	89	237	0	ENST00000330479.4:c.355G>A	p.Ala119Thr	p.A119T	ENST00000330479	NM_020382.3	119	Gcc/Acc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217287	7217287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	181	560	0	ENST00000380728.2:c.418C>T	p.Arg140Cys	p.R140C	ENST00000380728		140	Cgc/Tgc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657548	37657548	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	41	455	1	ENST00000447079.4:c.2465G>T	p.Gly822Val	p.G822V	ENST00000447079	NM_015083.1	822	gGa/gTa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612394	1612394	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	250	775	0	ENST00000344749.5:c.1625T>C	p.Leu542Pro	p.L542P	ENST00000344749	NM_001136139.2	542	cTg/cCg																																																																															
INSR	3643	MSKCC	GRCh37	19	7141771	7141771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	181	682	0	ENST00000302850.5:c.2599G>A	p.Val867Ile	p.V867I	ENST00000302850	NM_000208.2	867	Gtc/Atc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10277309	10277309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1257	229	765	0	ENST00000340748.4:c.808G>A	p.Val270Met	p.V270M	ENST00000340748		270	Gtg/Atg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170754	11170754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	246	697	0	ENST00000344626.4:c.4802G>A	p.Arg1601Gln	p.R1601Q	ENST00000344626	NM_003072.3	1601	cGg/cAg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30314584	30314584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	140	642	0	ENST00000262643.3:c.1133C>T	p.Ala378Val	p.A378V	ENST00000262643	NM_001238.2	378	gCc/gTc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45860548	45860548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	258	730	0	ENST00000391945.4:c.1459C>T	p.Arg487Trp	p.R487W	ENST00000391945	NM_000400.3	487	Cgg/Tgg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50920501	50920501	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	184	602	0	ENST00000440232.2:c.3193C>A	p.Leu1065Met	p.L1065M	ENST00000440232	NM_002691.3	1065	Ctg/Atg																																																																															
CASP8	841	MSKCC	GRCh37	2	202131394	202131394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	118	521	0	ENST00000358485.4:c.362T>C	p.Leu121Pro	p.L121P	ENST00000358485	NM_001080125.1	121	cTg/cCg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24167529	24167529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	226	650	1	ENST00000263121.7:c.913G>A	p.Gly305Arg	p.G305R	ENST00000263121	NM_003073.3	305	Ggg/Agg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098705	47098705	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	177	617	0	ENST00000409792.3:c.6569C>A	p.Pro2190His	p.P2190H	ENST00000409792	NM_014159.6	2190	cCc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921558	178921558	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	23	347	0	ENST00000263967.3:c.1040A>T	p.Asn347Ile	p.N347I	ENST00000263967	NM_006218.2	347	aAt/aTt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155038	55155038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	105	460	0	ENST00000257290.5:c.2747C>T	p.Ala916Val	p.A916V	ENST00000257290	NM_006206.4	916	gCc/gTc																																																																															
KIT	3815	MSKCC	GRCh37	4	55564453	55564453	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	123	384	0	ENST00000288135.5:c.341C>A	p.Pro114His	p.P114H	ENST00000288135	NM_000222.2	114	cCt/cAt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946307	2946307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1140	285	807	0	ENST00000396946.4:c.3430C>T	p.Arg1144Cys	p.R1144C	ENST00000396946	NM_032415.4	1144	Cgc/Tgc																																																																															
SYK	6850	MSKCC	GRCh37	9	93639944	93639944	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	89	295	0	ENST00000375746.1:c.1273C>T	p.Gln425Ter	p.Q425*	ENST00000375746	NM_001174167.1	425	Cag/Tag																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321297	1321297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	161	532	0	ENST00000381566.1:c.458G>A	p.Arg153Gln	p.R153Q	ENST00000381566		153	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0043737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	109	192	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	256	304	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0043737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	365	564	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	343	240	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935606	13935606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	142	286	0	ENST00000405192.2:c.1250G>A	p.Arg417His	p.R417H	ENST00000405192	NM_001163147.1	417	cGt/cAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70354667	70354667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	151	323	0	ENST00000374080.3:c.4832G>A	p.Arg1611His	p.R1611H	ENST00000374080		1611	cGt/cAt																																																																															
PGR	5241	MSKCC	GRCh37	11	100912760	100912760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	33	278	0	ENST00000325455.5:c.2562G>T	p.Lys854Asn	p.K854N	ENST00000325455	NM_001202474.3	854	aaG/aaT																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36941169	36941169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	46	390	0	ENST00000361632.4:c.170C>T	p.Pro57Leu	p.P57L	ENST00000361632		57	cCg/cTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435260	56435260	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	81	375	0	ENST00000407977.2:c.1877del	p.Pro626GlnfsTer74	p.P626Qfs*74	ENST00000407977		626	cCa/ca																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	95	168	0	ENST00000257430.4:c.4067del	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	GG			P-0043939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	483	307	0	ENST00000269305.4:c.584delinsCC	p.Ile195ThrfsTer14	p.I195Tfs*14	ENST00000269305	NM_001126112.2	195	aTc/aCCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0044302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	335	617	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37053562	37053562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	103	493	1	ENST00000231790.2:c.649C>T	p.Arg217Cys	p.R217C	ENST00000231790	NM_000249.3	217	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175452	112175452	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0044302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	131	339	0	ENST00000257430.4:c.4161T>A	p.Cys1387Ter	p.C1387*	ENST00000257430	NM_000038.5	1387	tgT/tgA																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30099978	30099978	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	41	461	0	ENST00000331968.5:c.1642T>A	p.Ser548Thr	p.S548T	ENST00000331968	NM_002742.2	548	Tcc/Acc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473653	67473653	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	166	548	0	ENST00000327367.4:c.733G>C	p.Gly245Arg	p.G245R	ENST00000327367	NM_005902.3	245	Ggg/Cgg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509857	106509857	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	131	625	0	ENST00000359195.3:c.1851G>T	p.Trp617Cys	p.W617C	ENST00000359195	NM_002649.2	617	tgG/tgT																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0044437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	197	339	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	261	600	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138426006	138426006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	80	352	1	ENST00000289153.2:c.1525G>A	p.Asp509Asn	p.D509N	ENST00000289153	NM_006219.2	509	Gat/Aat																																																																															
SESN2	83667	MSKCC	GRCh37	1	28605738	28605738	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	82	514	0	ENST00000253063.3:c.1342C>T	p.Arg448Cys	p.R448C	ENST00000253063	NM_031459.4	448	Cgc/Tgc																																																																															
ETV1	2115	MSKCC	GRCh37	7	14027792	14027792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	97	239	0	ENST00000405192.2:c.52C>T	p.Arg18Cys	p.R18C	ENST00000405192	NM_001163147.1	18	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0044664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	191	392	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	150	318	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																																																															
WT1	7490	MSKCC	GRCh37	11	32421519	32421519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	219	570	0	ENST00000332351.3:c.1073C>T	p.Thr358Met	p.T358M	ENST00000332351	NM_024426.4	358	aCg/aTg																																																																															
ALK	238	MSKCC	GRCh37	2	29606700	29606700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	80	551	0	ENST00000389048.3:c.1180G>A	p.Gly394Arg	p.G394R	ENST00000389048	NM_004304.4	394	Ggg/Agg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222867	5222867	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1193352037		P-0044664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	188	532	0	ENST00000357368.4:c.2936G>A	p.Arg979Gln	p.R979Q	ENST00000357368	NM_002850.3	979	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577563	7577571	+	inframe_deletion	In_Frame_Del	DEL	TGTTACACA	TGTTACACA	-			P-0044664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	320	602	1	ENST00000269305.4:c.710_718del	p.Met237_Asn239del	p.M237_N239del	ENST00000269305	NM_001126112.2	237	aTGTGTAACAgt/agt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633574	69633574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	183	220	0	ENST00000334134.2:c.128C>T	p.Pro43Leu	p.P43L	ENST00000334134	NM_005247.2	43	cCc/cTc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99451936	99451936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	93	310	0	ENST00000268035.6:c.1270G>A	p.Asp424Asn	p.D424N	ENST00000268035	NM_000875.3	424	Gac/Aac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259167	89259167	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	121	343	0	ENST00000336596.2:c.311G>T	p.Arg104Leu	p.R104L	ENST00000336596	NM_005233.5	104	cGa/cTa																																																																															
APC	324	MSKCC	GRCh37	5	112173348	112173349	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0044664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	84	301	0	ENST00000257430.4:c.2062_2063dup	p.Ala689GlnfsTer30	p.A689Qfs*30	ENST00000257430	NM_000038.5	686	aat/aaTCt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117622147	117622147	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	20	260	0	ENST00000368508.3:c.6723A>C	p.Glu2241Asp	p.E2241D	ENST00000368508	NM_002944.2	2241	gaA/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0045109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	422	587	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	149	219	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																															
EED	8726	MSKCC	GRCh37	11	85988037	85988037	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	34	189	0	ENST00000263360.6:c.982A>C	p.Ile328Leu	p.I328L	ENST00000263360	NM_003797.3	328	Att/Ctt																																																																															
BRAF	673	MSKCC	GRCh37	7	140482898	140482898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	382	557	2	ENST00000288602.6:c.1237G>A	p.Val413Met	p.V413M	ENST00000288602	NM_004333.4	413	Gtg/Atg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	73	455	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374293	138374293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	146	590	0	ENST00000289153.2:c.3151G>A	p.Glu1051Lys	p.E1051K	ENST00000289153	NM_006219.2	1051	Gaa/Aaa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563311	21563311	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77919685		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	185	1026	2	ENST00000382592.4:c.608C>T	p.Ala203Val	p.A203V	ENST00000382592	NM_014572.2	203	gCg/gTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	291	749	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	77	338	3	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	143	831	5	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
MITF	4286	MSKCC	GRCh37	3	70014077	70014077	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201351378		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	97	525	0	ENST00000352241.4:c.1241G>A	p.Arg414Gln	p.R414Q	ENST00000352241	NM_198159.2	414	cGg/cAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	141	780	2	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	87	510	1	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874637	35874637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	92	398	1	ENST00000303115.3:c.799del	p.Arg267GlyfsTer28	p.R267Gfs*28	ENST00000303115	NM_002185.3	265	Aaa/aa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646981	23646981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs587776408		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	171	782	8	ENST00000261584.4:c.886del	p.Met296Ter	p.M296*	ENST00000261584	NM_024675.3	296	Atg/tg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152198	11152200	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	171	793	0	ENST00000344626.4:c.4391_4393del	p.Lys1464del	p.K1464del	ENST00000344626	NM_003072.3	1462	atGAAg/atg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720803	89720804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	39	328	0	ENST00000371953.3:c.955dup	p.Thr319AsnfsTer6	p.T319Nfs*6	ENST00000371953	NM_000314.4	318	-/A																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110203	3110203	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147528229		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	166	838	1	ENST00000078429.4:c.193G>A	p.Ala65Thr	p.A65T	ENST00000078429	NM_002067.2	65	Gcc/Acc																																																																															
ERG	2078	MSKCC	GRCh37	21	39755426	39755427	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	108	601	2	ENST00000288319.7:c.1338dup	p.Ala447CysfsTer19	p.A447Cfs*19	ENST00000288319	NM_182918.3	446	-/T																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354007	15354008	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	24	310	0	ENST00000263377.2:c.2872dup	p.Leu958ProfsTer135	p.L958Pfs*135	ENST00000263377	NM_058243.2	958	ctg/cCtg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	133	640	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	65	949	0	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434182	12434182	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1187529076		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	119	496	0	ENST00000287820.6:c.556del	p.Ser186ValfsTer47	p.S186Vfs*47	ENST00000287820	NM_015869.4	184	Aaa/aa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350772	89350775	+	frameshift_variant	Frame_Shift_Del	DEL	TTTG	TTTG	-	rs886039734		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	196	845	0	ENST00000301030.4:c.2175_2178del	p.Asn725LysfsTer23	p.N725Kfs*23	ENST00000301030	NM_001256183.1	725	aaCAAA/aa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214398	36214398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs868041281		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	172	691	2	ENST00000222270.7:c.3057del	p.Gly1020AlafsTer4	p.G1020Afs*4	ENST00000222270	NM_014727.1	1018	Aaa/aa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350105	89350105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	220	947	0	ENST00000301030.4:c.2845C>T	p.Arg949Trp	p.R949W	ENST00000301030	NM_001256183.1	949	Cgg/Tgg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099427	157099432	+	inframe_deletion	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	rs1234257273		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	38	313	0	ENST00000346085.5:c.381_386del	p.Gln130_Gln131del	p.Q130_Q131del	ENST00000346085	NM_020732.3	122	CAGCAG/-																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46587791	46587791	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	101	437	2	ENST00000263734.3:c.475del	p.Ser159AlafsTer12	p.S159Afs*12	ENST00000263734	NM_001430.4	157	Aaa/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925402	114925402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs768101780		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	188	822	0	ENST00000543371.1:c.1485del	p.Ser496ProfsTer5	p.S496Pfs*5	ENST00000543371	NM_001198531.1	494	Ccc/cc																																																																															
POLE	5426	MSKCC	GRCh37	12	133220100	133220100	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	158	874	0	ENST00000320574.5:c.4337T>C	p.Val1446Ala	p.V1446A	ENST00000320574	NM_006231.2	1446	gTg/gCg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192645	138192645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	103	414	0	ENST00000237289.4:c.281C>T	p.Ala94Val	p.A94V	ENST00000237289	NM_001270507.1	94	gCg/gTg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29092947	29092947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	126	520	0	ENST00000328354.6:c.1037G>A	p.Arg346His	p.R346H	ENST00000328354	NM_007194.3	346	cGt/cAt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3808001	3808001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	134	574	1	ENST00000262367.5:c.3418C>T	p.Arg1140Trp	p.R1140W	ENST00000262367	NM_004380.2	1140	Cgg/Tgg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1620979	1620979	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1329397192		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	212	1065	2	ENST00000344749.5:c.1081del	p.Gln361ArgfsTer33	p.Q361Rfs*33	ENST00000344749	NM_001136139.2	361	Cag/ag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098009	178098009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	78	357	0	ENST00000397062.3:c.371C>T	p.Ala124Val	p.A124V	ENST00000397062	NM_006164.4	124	gCg/gTg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11015633	11015634	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	131	496	1	ENST00000327064.4:c.235_236dup	p.Phe80SerfsTer46	p.F80Sfs*46	ENST00000327064	NM_199141.1	76	gat/gaTGt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162429	47162429	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	100	448	0	ENST00000409792.3:c.3697del	p.Thr1233GlnfsTer3	p.T1233Qfs*3	ENST00000409792	NM_014159.6	1233	Aca/ca																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022738	12022738	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	117	559	0	ENST00000396373.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000396373	NM_001987.4	282	Cgg/Tgg																																																																															
POLE	5426	MSKCC	GRCh37	12	133244124	133244124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	172	525	2	ENST00000320574.5:c.2284C>T	p.Arg762Trp	p.R762W	ENST00000320574	NM_006231.2	762	Cgg/Tgg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271507	15271507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	245	1205	1	ENST00000263388.2:c.6932C>T	p.Pro2311Leu	p.P2311L	ENST00000263388	NM_000435.2	2311	cCg/cTg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1936885	1936885	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1445291234		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	72	462	1	ENST00000382891.5:c.1576del	p.Arg526GlufsTer72	p.R526Efs*72	ENST00000382891	NM_133335.3	524	Aaa/aa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258735	16258735	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	116	583	2	ENST00000375759.3:c.6005del	p.Asn2002MetfsTer20	p.N2002Mfs*20	ENST00000375759	NM_015001.2	2000	ggA/gg																																																																															
MDM4	4194	MSKCC	GRCh37	1	204515953	204515953	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	63	417	0	ENST00000367182.3:c.851T>G	p.Leu284Arg	p.L284R	ENST00000367182	NM_001278516.1	284	cTg/cGg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18715673	18715673	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	52	304	0	ENST00000266497.5:c.3504A>T	p.Lys1168Asn	p.K1168N	ENST00000266497		1168	aaA/aaT																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495604	56495604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	96	580	0	ENST00000267101.3:c.3794G>A	p.Arg1265Gln	p.R1265Q	ENST00000267101	NM_001982.3	1265	cGg/cAg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560386	95560386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	137	565	0	ENST00000343455.3:c.5203C>A	p.Leu1735Met	p.L1735M	ENST00000343455	NM_177438.2	1735	Ctg/Atg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482758	67482758	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	98	505	0	ENST00000327367.4:c.1162A>T	p.Thr388Ser	p.T388S	ENST00000327367	NM_005902.3	388	Act/Tct																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99250839	99250839	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	99	501	0	ENST00000268035.6:c.143G>C	p.Arg48Pro	p.R48P	ENST00000268035	NM_000875.3	48	cGc/cCc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30134431	30134431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	164	748	2	ENST00000263025.4:c.100C>T	p.Gln34Ter	p.Q34*	ENST00000263025	NM_002746.2	34	Cag/Tag																																																																															
CYLD	1540	MSKCC	GRCh37	16	50828136	50828136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	65	338	0	ENST00000398568.2:c.2474C>T	p.Pro825Leu	p.P825L	ENST00000398568	NM_001042412.1	825	cCg/cTg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618866	37618868	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs955200004		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	150	663	0	ENST00000447079.4:c.544_546del	p.Glu182del	p.E182del	ENST00000447079	NM_015083.1	181	aAGGag/aag																																																																															
INSR	3643	MSKCC	GRCh37	19	7184535	7184535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	180	552	1	ENST00000302850.5:c.766C>T	p.Arg256Cys	p.R256C	ENST00000302850	NM_000208.2	256	Cgc/Tgc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250885	10250885	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	163	789	1	ENST00000340748.4:c.3595A>G	p.Met1199Val	p.M1199V	ENST00000340748		1199	Atg/Gtg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213533	36213533	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	244	1193	0	ENST00000222270.7:c.2635C>A	p.Leu879Met	p.L879M	ENST00000222270	NM_014727.1	879	Ctg/Atg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716224	52716224	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	147	670	0	ENST00000322088.6:c.668T>C	p.Leu223Pro	p.L223P	ENST00000322088	NM_014225.5	223	cTg/cCg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566886	212566886	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	65	214	0	ENST00000342788.4:c.1295T>C	p.Leu432Pro	p.L432P	ENST00000342788	NM_005235.2	432	cTg/cCg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023506	31023506	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	116	506	0	ENST00000375687.4:c.2991G>C	p.Glu997Asp	p.E997D	ENST00000375687	NM_015338.5	997	gaG/gaC																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175836	24175836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	137	781	0	ENST00000263121.7:c.1064C>T	p.Thr355Ile	p.T355I	ENST00000263121	NM_003073.3	355	aCt/aTt																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374672	149374672	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	175	751	0	ENST00000360632.3:c.422A>G	p.Tyr141Cys	p.Y141C	ENST00000360632	NM_015472.4	141	tAc/tGc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250933	153250933	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	44	245	0	ENST00000281708.4:c.1127T>C	p.Leu376Pro	p.L376P	ENST00000281708	NM_033632.3	376	cTg/cCg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589238	67589238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	81	366	0	ENST00000274335.5:c.1226G>A	p.Arg409Gln	p.R409Q	ENST00000274335		409	cGg/cAg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047918	180047918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	173	938	0	ENST00000261937.6:c.2257G>A	p.Ala753Thr	p.A753T	ENST00000261937	NM_182925.4	753	Gcc/Acc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975415	13975415	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	127	483	0	ENST00000405192.2:c.472A>G	p.Thr158Ala	p.T158A	ENST00000405192	NM_001163147.1	158	Aca/Gca																																																																															
BRAF	673	MSKCC	GRCh37	7	140482918	140482918	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	151	724	1	ENST00000288602.6:c.1217T>C	p.Leu406Ser	p.L406S	ENST00000288602	NM_004333.4	406	tTa/tCa																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020741	37020741	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	147	609	0	ENST00000358127.4:c.104A>G	p.Asp35Gly	p.D35G	ENST00000358127	NM_001280556.1	35	gAt/gGt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137309058	137309058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139536056		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	224	1087	0	ENST00000481739.1:c.665C>T	p.Ser222Leu	p.S222L	ENST00000481739	NM_002957.4	222	tCg/tTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006840	47006840	+	5_prime_UTR_variant	5'UTR	SNP	T	T	C			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	197	420	0	ENST00000329236.7:c.-41T>C		p.*14*	ENST00000329236	NM_001204466.1																																																																																	
PIK3CD	5293	MSKCC	GRCh37	1	9776057	9776057	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148638384		P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	233	786	1	ENST00000377346.4:c.521C>T	p.Ser174Leu	p.S174L	ENST00000377346	NM_005026.3	174	tCg/tTg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984430	201984430	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	106	531	1	ENST00000359651.3:c.1095G>T	p.Glu365Asp	p.E365D	ENST00000359651		365	gaG/gaT																																																																															
POLE	5426	MSKCC	GRCh37	12	133201519	133201519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	184	769	0	ENST00000320574.5:c.6719G>A	p.Gly2240Glu	p.G2240E	ENST00000320574	NM_006231.2	2240	gGa/gAa																																																																															
POLE	5426	MSKCC	GRCh37	12	133209259	133209259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	382	719	1	ENST00000320574.5:c.6127G>A	p.Ala2043Thr	p.A2043T	ENST00000320574	NM_006231.2	2043	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	96	595	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	158	555	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
CD79B	974	MSKCC	GRCh37	17	62006635	62006635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	151	650	0	ENST00000392795.3:c.644G>A	p.Arg215Gln	p.R215Q	ENST00000392795	NM_001039933.1	215	cGg/cAg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290984	15290984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1228	128	885	1	ENST00000263388.2:c.3226C>T	p.Arg1076Cys	p.R1076C	ENST00000263388	NM_000435.2	1076	Cgt/Tgt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17937560	17937562	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	157	746	0	ENST00000458235.1:c.3365_3367del	p.Ser1122del	p.S1122del	ENST00000458235	NM_000215.3	1122	tCCTtt/ttt																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626736	12626736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149580968		P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	125	378	0	ENST00000251849.4:c.1553G>A	p.Arg518Gln	p.R518Q	ENST00000251849	NM_002880.3	518	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	65	177	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175219	112175219	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	63	160	0	ENST00000257430.4:c.3928A>T	p.Lys1310Ter	p.K1310*	ENST00000257430	NM_000038.5	1310	Aag/Tag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2958189	2958189	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	149	696	0	ENST00000396946.4:c.2543G>T	p.Arg848Leu	p.R848L	ENST00000396946	NM_032415.4	848	cGc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0045514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	42	320	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440957	56440957	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35219874		P-0045514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	108	497	0	ENST00000407977.2:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000407977		127	cGg/cAg																																																																															
RARA	5914	MSKCC	GRCh37	17	38510683	38510683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	99	518	1	ENST00000254066.5:c.937G>A	p.Ala313Thr	p.A313T	ENST00000254066	NM_000964.3	313	Gcc/Acc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153271228	153271228	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	20	203	0	ENST00000281708.4:c.550G>T	p.Gly184Ter	p.G184*	ENST00000281708	NM_033632.3	184	Gga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577562	7577563	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTT			P-0045514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	80	422	0	ENST00000269305.4:c.715_718dup	p.Ser240LysfsTer25	p.S240Kfs*25	ENST00000269305	NM_001126112.2	240	agt/aAACAgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0045538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	17	479	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0045943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	62	240	0	ENST00000257430.4:c.4128T>A	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	273	555	0	ENST00000269305.4:c.809T>G	p.Phe270Cys	p.F270C	ENST00000269305	NM_001126112.2	270	tTt/tGt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212230	5212230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367918810		P-0045943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	100	626	0	ENST00000357368.4:c.4801G>A	p.Val1601Ile	p.V1601I	ENST00000357368	NM_002850.3	1601	Gtc/Atc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711275	114711276	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	182	282	0	ENST00000543371.1:c.290_291insT	p.Pro98AlafsTer47	p.P98Afs*47	ENST00000543371	NM_001198531.1	97	ggg/ggTg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148511206	148511206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	42	399	1	ENST00000320356.2:c.1696C>T	p.Arg566Cys	p.R566C	ENST00000320356	NM_004456.4	566	Cgc/Tgc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0045955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	115	241	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CBL	867	MSKCC	GRCh37	11	119156088	119156088	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187952822		P-0045955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	212	521	0	ENST00000264033.4:c.1753C>T	p.Arg585Cys	p.R585C	ENST00000264033	NM_005188.3	585	Cgc/Tgc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0045955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	157	361	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134977949	134977949	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56186270		P-0045955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	141	361	0	ENST00000398015.3:c.2942C>T	p.Thr981Met	p.T981M	ENST00000398015	NM_004441.4	981	aCg/aTg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671684	30671684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	209	544	0	ENST00000376406.3:c.5276G>A	p.Gly1759Glu	p.G1759E	ENST00000376406	NM_014641.2	1759	gGa/gAa																																																																															
SMO	6608	MSKCC	GRCh37	7	128845102	128845102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	278	569	0	ENST00000249373.3:c.596G>A	p.Arg199Gln	p.R199Q	ENST00000249373	NM_005631.4	199	cGg/cAg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434644	110434644	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	188	499	0	ENST00000375856.3:c.3757T>C	p.Tyr1253His	p.Y1253H	ENST00000375856	NM_003749.2	1253	Tac/Cac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831156	72831156	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	24	374	0	ENST00000268489.5:c.5425C>G	p.Leu1809Val	p.L1809V	ENST00000268489	NM_006885.3	1809	Ctt/Gtt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131925343	131925344	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0045955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	30	106	1	ENST00000265335.6:c.1266_1267delinsAT	p.Thr423Ser	p.T423S	ENST00000265335		422	gaGAct/gaATct																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93969123	93969123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	104	257	0	ENST00000369303.4:c.1873G>T	p.Ala625Ser	p.A625S	ENST00000369303	NM_004440.3	625	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	286	386	0	ENST00000269305.4:c.809T>G	p.Phe270Cys	p.F270C	ENST00000269305	NM_001126112.2	270	tTt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112175346	112175356	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAATTTTCT	TTGAATTTTCT	-			P-0046103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	93	128	0	ENST00000257430.4:c.4056_4066del	p.Glu1353ArgfsTer18	p.E1353Rfs*18	ENST00000257430	NM_000038.5	1352	gTTGAATTTTCT/g																																																																															
MED12	9968	MSKCC	GRCh37	X	70343060	70343060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	270	286	0	ENST00000374080.3:c.1601C>T	p.Ala534Val	p.A534V	ENST00000374080		534	gCg/gTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983288	15983288	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	143	227	0	ENST00000268712.3:c.3491C>G	p.Ser1164Cys	p.S1164C	ENST00000268712	NM_006311.3	1164	tCt/tGt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117948	70117948	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	172	269	0	ENST00000245479.2:c.416T>A	p.Leu139Gln	p.L139Q	ENST00000245479	NM_000346.3	139	cTg/cAg																																																																															
TET2	54790	MSKCC	GRCh37	4	106157303	106157303	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	26	167	0	ENST00000380013.4:c.2204G>C	p.Ser735Thr	p.S735T	ENST00000380013	NM_001127208.2	735	aGt/aCt																																																																															
NBN	4683	MSKCC	GRCh37	8	90993026	90993026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	62	248	0	ENST00000265433.3:c.416C>T	p.Thr139Ile	p.T139I	ENST00000265433	NM_002485.4	139	aCt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	102	551	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	80	350	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	147	789	3	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	97	259	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	129	711	1	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030613	48030613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	73	418	0	ENST00000234420.5:c.3227G>A	p.Arg1076His	p.R1076H	ENST00000234420	NM_000179.2	1076	cGc/cAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98248030	98248030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	51	477	1	ENST00000331920.6:c.521C>T	p.Ala174Val	p.A174V	ENST00000331920	NM_000264.3	174	gCg/gTg																																																																															
KIT	3815	MSKCC	GRCh37	4	55602667	55602667	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	60	208	0	ENST00000288135.5:c.2488C>T	p.Arg830Ter	p.R830*	ENST00000288135	NM_000222.2	830	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032029	10032029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	203	552	2	ENST00000330684.3:c.794C>T	p.Thr265Met	p.T265M	ENST00000330684	NM_001134407.1	265	aCg/aTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41572450	41572450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	142	782	0	ENST00000263253.7:c.4979C>T	p.Thr1660Met	p.T1660M	ENST00000263253	NM_001429.3	1660	aCg/aTg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391075	89391075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	87	525	0	ENST00000336596.2:c.1141C>T	p.Arg381Cys	p.R381C	ENST00000336596	NM_005233.5	381	Cgc/Tgc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867304	45867304	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1372639983		P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	70	778	0	ENST00000391945.4:c.889G>A	p.Ala297Thr	p.A297T	ENST00000391945	NM_000400.3	297	Gcc/Acc																																																																															
TEK	7010	MSKCC	GRCh37	9	27158132	27158132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	60	333	0	ENST00000380036.4:c.356G>A	p.Arg119His	p.R119H	ENST00000380036	NM_000459.3	119	cGt/cAt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117706974	117706974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	39	411	1	ENST00000368508.3:c.2176G>A	p.Val726Ile	p.V726I	ENST00000368508	NM_002944.2	726	Gtt/Att																																																																															
MPL	4352	MSKCC	GRCh37	1	43804304	43804304	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763568293		P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	98	536	0	ENST00000372470.3:c.304C>T	p.Arg102Cys	p.R102C	ENST00000372470	NM_005373.2	102	Cgt/Tgt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982157	201982157	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	112	697	1	ENST00000359651.3:c.684del	p.Ser229AlafsTer25	p.S229Afs*25	ENST00000359651		227	ttC/tt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724632	162724632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	50	383	0	ENST00000367921.3:c.404G>A	p.Arg135His	p.R135H	ENST00000367921	NM_006182.2	135	cGt/cAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910883	114910883	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	53	319	0	ENST00000543371.1:c.1001+1G>A		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																																
IRS2	8660	MSKCC	GRCh37	13	110435253	110435253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	70	352	1	ENST00000375856.3:c.3148G>A	p.Val1050Ile	p.V1050I	ENST00000375856	NM_003749.2	1050	Gtt/Att																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647400	3647400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	97	652	2	ENST00000294008.3:c.1663G>A	p.Val555Met	p.V555M	ENST00000294008	NM_032444.2	555	Gtg/Atg																																																																															
NF1	4763	MSKCC	GRCh37	17	29592354	29592354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	60	367	0	ENST00000358273.4:c.4832G>A	p.Arg1611Gln	p.R1611Q	ENST00000358273	NM_001042492.2	1611	cGg/cAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819345	3819345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	65	480	0	ENST00000262367.5:c.2890G>A	p.Ala964Thr	p.A964T	ENST00000262367	NM_004380.2	964	Gca/Aca																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52723074	52723074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	100	533	0	ENST00000322088.6:c.1259G>A	p.Arg420Gln	p.R420Q	ENST00000322088	NM_014225.5	420	cGg/cAg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209366	98209366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	92	652	0	ENST00000331920.6:c.4172G>A	p.Arg1391Gln	p.R1391Q	ENST00000331920	NM_000264.3	1391	cGg/cAg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11264751	11264751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	101	590	0	ENST00000361445.4:c.3811G>A	p.Ala1271Thr	p.A1271T	ENST00000361445	NM_004958.3	1271	Gct/Act																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800444	32800444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	133	785	0	ENST00000374899.4:c.1103G>A	p.Arg368Gln	p.R368Q	ENST00000374899	NM_018833.2	368	cGg/cAg																																																																															
SUFU	51684	MSKCC	GRCh37	10	104264060	104264060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	119	564	1	ENST00000369902.3:c.151C>A	p.Pro51Thr	p.P51T	ENST00000369902	NM_016169.3	51	Ccg/Acg																																																																															
SETD8	387893	MSKCC	GRCh37	12	123875183	123875183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	55	359	0	ENST00000330479.4:c.139G>A	p.Val47Ile	p.V47I	ENST00000330479	NM_020382.3	47	Gta/Ata																																																																															
POLE	5426	MSKCC	GRCh37	12	133248871	133248871	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	95	578	0	ENST00000320574.5:c.1724A>G	p.Glu575Gly	p.E575G	ENST00000320574	NM_006231.2	575	gAg/gGg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435697	110435697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	52	429	0	ENST00000375856.3:c.2704C>T	p.Pro902Ser	p.P902S	ENST00000375856	NM_003749.2	902	Ccc/Tcc																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873741	35873741	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	102	495	0	ENST00000216797.5:c.110T>C	p.Met37Thr	p.M37T	ENST00000216797	NM_020529.2	37	aTg/aCg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671741	67671741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	38	572	0	ENST00000264010.4:c.2150C>T	p.Thr717Met	p.T717M	ENST00000264010	NM_006565.3	717	aCg/aTg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368266	45368266	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	88	341	0	ENST00000262160.6:c.1336C>A	p.Leu446Ile	p.L446I	ENST00000262160	NM_005901.5	446	Cta/Ata																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661674	227661674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	81	671	0	ENST00000305123.5:c.1781G>A	p.Arg594His	p.R594H	ENST00000305123	NM_005544.2	594	cGt/cAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57478746	57478746	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	64	313	0	ENST00000371085.3:c.332G>T	p.Ser111Ile	p.S111I	ENST00000371085	NM_000516.4	111	aGc/aTc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267003	41267003	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144087793		P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	85	371	0	ENST00000349496.5:c.674G>A	p.Arg225His	p.R225H	ENST00000349496	NM_001904.3	225	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178937482	178937482	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	104	363	0	ENST00000263967.3:c.1870A>G	p.Thr624Ala	p.T624A	ENST00000263967	NM_006218.2	624	Aca/Gca																																																																															
MET	4233	MSKCC	GRCh37	7	116339730	116339730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	49	305	0	ENST00000397752.3:c.592G>T	p.Gly198Cys	p.G198C	ENST00000397752	NM_000245.2	198	Ggc/Tgc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117861248	117861249	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	24	298	0	ENST00000297338.2:c.1640dup	p.Asp548ArgfsTer26	p.D548Rfs*26	ENST00000297338	NM_006265.2	547	ggc/ggGc																																																																															
PAX5	5079	MSKCC	GRCh37	9	37002755	37002755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	64	511	1	ENST00000358127.4:c.494C>T	p.Thr165Met	p.T165M	ENST00000358127	NM_001280556.1	165	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	167	862	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273940	10273940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	159	1042	0	ENST00000330684.3:c.329C>T	p.Ala110Val	p.A110V	ENST00000330684	NM_001134407.1	110	gCc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0046735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	73	405	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965572	93965572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	32	351	0	ENST00000369303.4:c.2356G>A	p.Asp786Asn	p.D786N	ENST00000369303	NM_004440.3	786	Gat/Aat																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31449442	31449442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	87	426	1	ENST00000344624.3:c.2767C>T	p.Arg923Trp	p.R923W	ENST00000344624		923	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936077	178936085	+	inframe_deletion	In_Frame_Del	DEL	TCTCTGAAA	TCTCTGAAA	-			P-0046735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	154	447	0	ENST00000263967.3:c.1621_1629del	p.Ser541_Ile543del	p.S541_I543del	ENST00000263967	NM_006218.2	540	cTCTCTGAAAtc/ctc																																																																															
APC	324	MSKCC	GRCh37	5	112170856	112170883	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCACAGGTATATATAGAGTTTTATATT	ACCACAGGTATATATAGAGTTTTATATT	-			P-0046735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	65	405	0	ENST00000257430.4:c.1954_1958+23del		p.X652_splice	ENST00000257430	NM_000038.5	652																																																																																
TP53	7157	MSKCC	GRCh37	17	7577126	7577126	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	98	524	0	ENST00000269305.4:c.812A>T	p.Glu271Val	p.E271V	ENST00000269305	NM_001126112.2	271	gAg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	21	302	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																															
HGF	3082	MSKCC	GRCh37	7	81358979	81358979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	28	431	0	ENST00000222390.5:c.982C>T	p.Arg328Cys	p.R328C	ENST00000222390	NM_000601.4	328	Cgt/Tgt																																																																															
PGR	5241	MSKCC	GRCh37	11	100999677	100999677	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	79	823	0	ENST00000325455.5:c.125C>A	p.Ser42Ter	p.S42*	ENST00000325455	NM_001202474.3	42	tCg/tAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0047231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	36	530	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	230	1023	2	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175352	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0047231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	51	252	0	ENST00000257430.4:c.4062_4063del	p.Ser1355PhefsTer19	p.S1355Ffs*19	ENST00000257430	NM_000038.5	1354	TTt/t																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628773	187628773	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	152	721	0	ENST00000441802.2:c.2209A>G	p.Ile737Val	p.I737V	ENST00000441802	NM_005245.3	737	Att/Gtt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519732	176519732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	113	1055	0	ENST00000292408.4:c.1004C>T	p.Ala335Val	p.A335V	ENST00000292408	NM_213647.1	335	gCa/gTa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0047234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	126	331	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0047234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	35	344	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0047234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	66	283	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851230	63851230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	94	595	0	ENST00000279873.7:c.2008C>T	p.His670Tyr	p.H670Y	ENST00000279873	NM_032199.2	670	Cat/Tat																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94068121	94068121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149408123		P-0047234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	43	193	0	ENST00000369303.4:c.841C>T	p.Arg281Cys	p.R281C	ENST00000369303	NM_004440.3	281	Cgt/Tgt																																																																															
ATR	545	MSKCC	GRCh37	3	142177877	142177877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	77	275	0	ENST00000350721.4:c.7426C>T	p.Arg2476Cys	p.R2476C	ENST00000350721	NM_001184.3	2476	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579310	7579310	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0047234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	198	553	0	ENST00000269305.4:c.375+2T>C		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
PREX2	80243	MSKCC	GRCh37	8	68992692	68992692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	59	446	0	ENST00000288368.4:c.1657G>A	p.Glu553Lys	p.E553K	ENST00000288368	NM_024870.2	553	Gaa/Aaa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46125052	46125052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	32	239	0	ENST00000334344.6:c.239G>T	p.Arg80Ile	p.R80I	ENST00000334344	NM_152641.2	80	aGa/aTa																																																																															
APC	324	MSKCC	GRCh37	5	112175321	112175322	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0047234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	54	186	0	ENST00000257430.4:c.4031dup	p.Glu1345ArgfsTer9	p.E1345Rfs*9	ENST00000257430	NM_000038.5	1344	tca/tCca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	236	500	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112173975	112173975	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	127	379	0	ENST00000257430.4:c.2684C>A	p.Ser895Ter	p.S895*	ENST00000257430	NM_000038.5	895	tCa/tAa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880998	37880998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	304	842	1	ENST00000269571.5:c.2327G>T	p.Gly776Val	p.G776V	ENST00000269571		776	gGt/gTt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36941125	36941125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	285	858	1	ENST00000361632.4:c.214G>A	p.Gly72Arg	p.G72R	ENST00000361632		72	Ggg/Agg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928065	178928076	+	inframe_deletion	In_Frame_Del	DEL	TACCTCATGGAT	TACCTCATGGAT	-			P-0047322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	103	591	0	ENST00000263967.3:c.1345_1356del	p.Pro449_Leu452del	p.P449_L452del	ENST00000263967	NM_006218.2	448	gTACCTCATGGATta/gta																																																																															
MGA	23269	MSKCC	GRCh37	15	42058228	42058228	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	85	308	0	ENST00000219905.7:c.7948C>T	p.Arg2650Ter	p.R2650*	ENST00000219905	NM_001164273.1	2650	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112157658	112157658	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	106	418	0	ENST00000257430.4:c.1378G>T	p.Glu460Ter	p.E460*	ENST00000257430	NM_000038.5	460	Gaa/Taa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176671268	176671268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	90	394	0	ENST00000439151.2:c.4375G>A	p.Gly1459Arg	p.G1459R	ENST00000439151	NM_022455.4	1459	Gga/Aga																																																																															
PREX2	80243	MSKCC	GRCh37	8	68989642	68989642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	189	519	0	ENST00000288368.4:c.1580G>A	p.Arg527His	p.R527H	ENST00000288368	NM_024870.2	527	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0047378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	157	781	6	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0047378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	167	433	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473647	67473647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	364	868	4	ENST00000327367.4:c.727C>T	p.Arg243Cys	p.R243C	ENST00000327367	NM_005902.3	243	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	393	921	2	ENST00000269305.4:c.773A>G	p.Glu258Gly	p.E258G	ENST00000269305	NM_001126112.2	258	gAa/gGa																																																																															
APC	324	MSKCC	GRCh37	5	112175751	112175751	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	191	356	0	ENST00000257430.4:c.4460del	p.Thr1487IlefsTer20	p.T1487Ifs*20	ENST00000257430	NM_000038.5	1487	aCt/at																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247344	153247344	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	162	377	0	ENST00000281708.4:c.1458G>A	p.Trp486Ter	p.W486*	ENST00000281708	NM_033632.3	486	tgG/tgA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860469	151860469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	67	839	1	ENST00000262189.6:c.10193G>A	p.Arg3398Gln	p.R3398Q	ENST00000262189	NM_170606.2	3398	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	50	300	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250883	153250883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	31	320	2	ENST00000281708.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000281708	NM_033632.3	393	Cga/Tga																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	46	808	0	ENST00000263121.7:c.1130G>T	p.Arg377Leu	p.R377L	ENST00000263121	NM_003073.3	377	cGt/cTt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99155420	99155420	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	38	431	0	ENST00000074304.5:c.646C>T	p.Arg216Ter	p.R216*	ENST00000074304	NM_001134224.1	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112176016	112176016	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	17	226	0	ENST00000257430.4:c.4725del	p.Glu1576LysfsTer74	p.E1576Kfs*74	ENST00000257430	NM_000038.5	1575	ctA/ct																																																																															
EP300	2033	MSKCC	GRCh37	22	41551118	41551118	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0047485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	25	434	1	ENST00000263253.7:c.3261+1G>A		p.X1087_splice	ENST00000263253	NM_001429.3	1087																																																																																
NUF2	83540	MSKCC	GRCh37	1	163306613	163306613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	31	332	0	ENST00000271452.3:c.410C>T	p.Thr137Met	p.T137M	ENST00000271452	NM_145697.2	137	aCg/aTg																																																																															
FH	2271	MSKCC	GRCh37	1	241663851	241663851	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	33	290	0	ENST00000366560.3:c.1276G>C	p.Ala426Pro	p.A426P	ENST00000366560	NM_000143.3	426	Gct/Cct																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45391476	45391476	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	45	261	0	ENST00000262160.6:c.684A>C	p.Glu228Asp	p.E228D	ENST00000262160	NM_005901.5	228	gaA/gaC																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264428	46264428	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	31	295	0	ENST00000371998.3:c.1475T>A	p.Ile492Lys	p.I492K	ENST00000371998		492	aTa/aAa																																																																															
APC	324	MSKCC	GRCh37	5	112174929	112174935	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGCAG	CAAGCAG	-			P-0047485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	16	156	0	ENST00000257430.4:c.3638_3644del	p.Ser1213LeufsTer50	p.S1213Lfs*50	ENST00000257430	NM_000038.5	1213	tCAAGCAGt/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	20	507	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	860	1023	0	ENST00000269305.4:c.472C>G	p.Arg158Gly	p.R158G	ENST00000269305	NM_001126112.2	158	Cgc/Ggc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0047545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	11964	866	7	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867540	35867541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1250237683		P-0047545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	37	207	0	ENST00000303115.3:c.361dup	p.Ile121AsnfsTer8	p.I121Nfs*8	ENST00000303115	NM_002185.3	118	-/A																																																																															
RXRA	6256	MSKCC	GRCh37	9	137321073	137321073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	274	673	1	ENST00000481739.1:c.1030G>A	p.Ala344Thr	p.A344T	ENST00000481739	NM_002957.4	344	Gcc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106123	27106123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	205	481	0	ENST00000324856.7:c.5734G>A	p.Asp1912Asn	p.D1912N	ENST00000324856	NM_006015.4	1912	Gat/Aat																																																																															
ALK	238	MSKCC	GRCh37	2	30143063	30143063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	555	1041	1	ENST00000389048.3:c.463G>A	p.Val155Ile	p.V155I	ENST00000389048	NM_004304.4	155	Gtc/Atc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212652814	212652814	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	103	274	0	ENST00000342788.4:c.492A>C	p.Gln164His	p.Q164H	ENST00000342788	NM_005235.2	164	caA/caC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860365	151860365	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	141	416	0	ENST00000262189.6:c.10297C>T	p.Gln3433Ter	p.Q3433*	ENST00000262189	NM_170606.2	3433	Cag/Tag																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	277	650	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	113	507	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	76	555	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	116	614	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8317878	8317878	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151311972		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	102	524	0	ENST00000356435.5:c.5735C>T	p.Thr1912Met	p.T1912M	ENST00000356435		1912	aCg/aTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271991	15271991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	145	793	0	ENST00000263388.2:c.6448C>T	p.Arg2150Cys	p.R2150C	ENST00000263388	NM_000435.2	2150	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	76	464	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
PAX5	5079	MSKCC	GRCh37	9	36840607	36840607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	147	791	2	ENST00000358127.4:c.1126G>A	p.Ala376Thr	p.A376T	ENST00000358127	NM_001280556.1	376	Gcc/Acc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15973547	15973547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143125039		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	80	477	0	ENST00000268712.3:c.4445G>A	p.Arg1482Gln	p.R1482Q	ENST00000268712	NM_006311.3	1482	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	90	595	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
CDH1	999	MSKCC	GRCh37	16	68844127	68844127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	152	739	0	ENST00000261769.5:c.715G>A	p.Gly239Arg	p.G239R	ENST00000261769	NM_004360.3	239	Ggg/Agg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216091	7216091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	134	556	1	ENST00000380728.2:c.968G>A	p.Arg323Gln	p.R323Q	ENST00000380728		323	cGa/cAa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346077	89346077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	19	123	0	ENST00000301030.4:c.6873G>T	p.Glu2291Asp	p.E2291D	ENST00000301030	NM_001256183.1	2291	gaG/gaT																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593466	48593466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	114	512	0	ENST00000342988.3:c.1217C>T	p.Ala406Val	p.A406V	ENST00000342988	NM_005359.5	406	gCg/gTg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131924421	131924421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146370443		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	81	448	0	ENST00000265335.6:c.1094G>A	p.Arg365Gln	p.R365Q	ENST00000265335		365	cGa/cAa																																																																															
RET	5979	MSKCC	GRCh37	10	43596032	43596032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	174	845	1	ENST00000355710.3:c.199C>T	p.Arg67Cys	p.R67C	ENST00000355710	NM_020975.4	67	Cgc/Tgc																																																																															
JUN	3725	MSKCC	GRCh37	1	59248461	59248461	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	152	635	3	ENST00000371222.2:c.282del	p.Thr95ProfsTer9	p.T95Pfs*9	ENST00000371222	NM_002228.3	94	ccC/cc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903763	114903763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	120	562	0	ENST00000543371.1:c.767C>T	p.Pro256Leu	p.P256L	ENST00000543371	NM_001198531.1	256	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576899	7576899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	154	857	0	ENST00000269305.4:c.947C>T	p.Pro316Leu	p.P316L	ENST00000269305	NM_001126112.2	316	cCc/cTc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955043	17955043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs199602590		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	151	865	1	ENST00000458235.1:c.184G>A	p.Gly62Ser	p.G62S	ENST00000458235	NM_000215.3	62	Ggc/Agc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602340	10602340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	163	898	3	ENST00000171111.5:c.1238G>A	p.Arg413His	p.R413H	ENST00000171111	NM_203500.1	413	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106879	27106879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	116	753	2	ENST00000324856.7:c.6490C>T	p.Arg2164Trp	p.R2164W	ENST00000324856	NM_006015.4	2164	Cgg/Tgg																																																																															
CASP8	841	MSKCC	GRCh37	2	202150039	202150039	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs1368296717		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	152	698	0	ENST00000358485.4:c.1480C>T	p.Arg494Ter	p.R494*	ENST00000358485	NM_001080125.1	494	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2952993	2952993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	186	914	3	ENST00000396946.4:c.2947G>A	p.Val983Met	p.V983M	ENST00000396946	NM_032415.4	983	Gtg/Atg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198283258	198283258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	148	641	0	ENST00000335508.6:c.470G>A	p.Arg157Gln	p.R157Q	ENST00000335508	NM_012433.2	157	cGa/cAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575065	48575065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	77	423	0	ENST00000342988.3:c.259C>T	p.Arg87Trp	p.R87W	ENST00000342988	NM_005359.5	87	Cgg/Tgg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710593	117710593	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145765584		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	78	367	1	ENST00000368508.3:c.1679G>A	p.Arg560His	p.R560H	ENST00000368508	NM_002944.2	560	cGc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133236017	133236017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	160	732	2	ENST00000320574.5:c.3139G>A	p.Gly1047Arg	p.G1047R	ENST00000320574	NM_006231.2	1047	Ggg/Agg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641388	23641388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	200	1043	0	ENST00000261584.4:c.2087C>T	p.Thr696Met	p.T696M	ENST00000261584	NM_024675.3	696	aCg/aTg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275420	38275420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	172	880	1	ENST00000425967.3:c.1613G>A	p.Arg538His	p.R538H	ENST00000425967	NM_001174067.1	538	cGt/cAt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707624	176707624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	140	637	0	ENST00000439151.2:c.5681G>A	p.Arg1894His	p.R1894H	ENST00000439151	NM_022455.4	1894	cGt/cAt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784478	9784478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	82	451	0	ENST00000377346.4:c.2863C>T	p.Arg955Trp	p.R955W	ENST00000377346	NM_005026.3	955	Cgg/Tgg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18964097	18964097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	140	752	0	ENST00000262803.5:c.1094G>A	p.Arg365Gln	p.R365Q	ENST00000262803	NM_002911.3	365	cGg/cAg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658481	3658481	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140876043		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	164	836	1	ENST00000294008.3:c.485C>T	p.Thr162Met	p.T162M	ENST00000294008	NM_032444.2	162	aCg/aTg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37665993	37665993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	83	443	0	ENST00000447079.4:c.2645G>A	p.Arg882Gln	p.R882Q	ENST00000447079	NM_015083.1	882	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603007	48603007	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	70	354	0	ENST00000342988.3:c.1309-1G>T		p.X437_splice	ENST00000342988	NM_005359.5	437																																																																																
SLX4	84464	MSKCC	GRCh37	16	3632669	3632669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	143	907	0	ENST00000294008.3:c.5179G>A	p.Ala1727Thr	p.A1727T	ENST00000294008	NM_032444.2	1727	Gca/Aca																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939140	36939140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	183	893	3	ENST00000361632.4:c.569G>A	p.Arg190His	p.R190H	ENST00000361632		190	cGc/cAc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141572621	141572621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	149	745	0	ENST00000220592.5:c.449G>A	p.Arg150Gln	p.R150Q	ENST00000220592	NM_012154.3	150	cGg/cAg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625405	69625405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	170	940	1	ENST00000334134.2:c.388G>A	p.Ala130Thr	p.A130T	ENST00000334134	NM_005247.2	130	Gcc/Acc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99169415	99169415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	101	610	0	ENST00000074304.5:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000074304	NM_001134224.1	449	Gcc/Acc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88681341	88681341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	47	279	2	ENST00000372037.3:c.1231G>A	p.Glu411Lys	p.E411K	ENST00000372037	NM_004329.2	411	Gaa/Aaa																																																																															
INSR	3643	MSKCC	GRCh37	19	7168022	7168022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	115	755	1	ENST00000302850.5:c.1567G>A	p.Asp523Asn	p.D523N	ENST00000302850	NM_000208.2	523	Gac/Aac																																																																															
SUFU	51684	MSKCC	GRCh37	10	104359302	104359302	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	116	600	1	ENST00000369902.3:c.1022+1G>A		p.X341_splice	ENST00000369902	NM_016169.3	341																																																																																
ELF3	1999	MSKCC	GRCh37	1	201981297	201981297	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	209	853	0	ENST00000359651.3:c.376C>T	p.Arg126Ter	p.R126*	ENST00000359651		126	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107086	27107086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	112	653	0	ENST00000324856.7:c.6697C>T	p.Arg2233Trp	p.R2233W	ENST00000324856	NM_006015.4	2233	Cgg/Tgg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39250353	39250353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	110	704	1	ENST00000402219.2:c.1216C>T	p.Arg406Trp	p.R406W	ENST00000402219	NM_005633.3	406	Cgg/Tgg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919881	50919881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	158	803	0	ENST00000440232.2:c.2968C>T	p.Arg990Cys	p.R990C	ENST00000440232	NM_002691.3	990	Cgc/Tgc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797891	45797891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199840380		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	185	856	0	ENST00000372115.3:c.838C>T	p.Arg280Cys	p.R280C	ENST00000372115	NM_001048171.1	280	Cgc/Tgc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227015	53227015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	171	871	1	ENST00000375401.3:c.2560C>T	p.Arg854Trp	p.R854W	ENST00000375401	NM_004187.3	854	Cgg/Tgg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119720928	119720928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	119	617	0	ENST00000316626.5:c.247G>A	p.Ala83Thr	p.A83T	ENST00000316626		83	Gcc/Acc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2956977	2956977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	165	793	0	ENST00000396946.4:c.2650C>T	p.Arg884Trp	p.R884W	ENST00000396946	NM_032415.4	884	Cgg/Tgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829901	72829901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	157	870	1	ENST00000268489.5:c.6680G>A	p.Arg2227Gln	p.R2227Q	ENST00000268489	NM_006885.3	2227	cGg/cAg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2215893	2215893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	177	814	6	ENST00000326181.6:c.95C>T	p.Thr32Met	p.T32M	ENST00000326181	NM_032271.2	32	aCg/aTg																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64286793	64286793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	100	421	0	ENST00000370651.3:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000370651	NM_003463.4	3	cGa/cAa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615791	1615791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	139	824	2	ENST00000344749.5:c.1480G>A	p.Ala494Thr	p.A494T	ENST00000344749	NM_001136139.2	494	Gcc/Acc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288983	33288983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	146	656	0	ENST00000374542.5:c.569G>A	p.Arg190His	p.R190H	ENST00000374542	NM_001141970.1	190	cGt/cAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028757	47028757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	169	853	1	ENST00000329236.7:c.61C>T	p.Arg21Cys	p.R21C	ENST00000329236	NM_001204466.1	21	Cgc/Tgc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10246473	10246473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	165	888	2	ENST00000340748.4:c.4664G>A	p.Arg1555His	p.R1555H	ENST00000340748		1555	cGc/cAc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120484287	120484287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	128	609	1	ENST00000256646.2:c.2843C>T	p.Thr948Ile	p.T948I	ENST00000256646	NM_024408.3	948	aCa/aTa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843677	156843677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	188	908	1	ENST00000524377.1:c.1103G>A	p.Gly368Asp	p.G368D	ENST00000524377	NM_002529.3	368	gGc/gAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903744	114903744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	155	641	1	ENST00000543371.1:c.748G>A	p.Val250Ile	p.V250I	ENST00000543371	NM_001198531.1	250	Gta/Ata																																																																															
PAK1	5058	MSKCC	GRCh37	11	77090950	77090950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	104	556	0	ENST00000356341.3:c.280G>T	p.Gly94Trp	p.G94W	ENST00000356341	NM_002576.4	94	Ggg/Tgg																																																																															
CCND2	894	MSKCC	GRCh37	12	4409080	4409080	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	111	537	2	ENST00000261254.3:c.775C>T	p.Gln259Ter	p.Q259*	ENST00000261254	NM_001759.3	259	Cag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120992	115120992	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	136	632	0	ENST00000257566.3:c.14T>C	p.Met5Thr	p.M5T	ENST00000257566	NM_016569.3	5	aTg/aCg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28913358	28913358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	145	821	0	ENST00000282397.4:c.2435G>A	p.Arg812Gln	p.R812Q	ENST00000282397	NM_002019.4	812	cGg/cAg																																																																															
RB1	5925	MSKCC	GRCh37	13	48921999	48921999	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	40	441	0	ENST00000267163.4:c.539C>T	p.Ser180Leu	p.S180L	ENST00000267163	NM_000321.2	180	tCg/tTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562482	95562482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	230	551	0	ENST00000343455.3:c.4775C>T	p.Pro1592Leu	p.P1592L	ENST00000343455	NM_177438.2	1592	cCg/cTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830168	72830168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	148	748	1	ENST00000268489.5:c.6413C>T	p.Pro2138Leu	p.P2138L	ENST00000268489	NM_006885.3	2138	cCa/cTa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984816	11984816	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	104	600	0	ENST00000353533.5:c.362A>G	p.His121Arg	p.H121R	ENST00000353533	NM_003010.3	121	cAc/cGc																																																																															
NF1	4763	MSKCC	GRCh37	17	29548920	29548920	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	41	492	0	ENST00000358273.4:c.1694C>A	p.Ala565Asp	p.A565D	ENST00000358273	NM_001042492.2	565	gCt/gAt																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66526448	66526448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	120	567	0	ENST00000358598.2:c.1004G>A	p.Arg335His	p.R335H	ENST00000358598	NM_212471.2	335	cGt/cAt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290282	15290282	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	190	862	1	ENST00000263388.2:c.3353A>G	p.Asn1118Ser	p.N1118S	ENST00000263388	NM_000435.2	1118	aAc/aGc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279603	18279603	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	164	964	0	ENST00000222254.8:c.1876A>G	p.Lys626Glu	p.K626E	ENST00000222254	NM_005027.3	626	Aag/Gag																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45872232	45872232	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	160	858	0	ENST00000391945.4:c.202A>G	p.Thr68Ala	p.T68A	ENST00000391945	NM_000400.3	68	Acc/Gcc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912817	50912817	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754913337		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	166	856	1	ENST00000440232.2:c.2048G>A	p.Arg683His	p.R683H	ENST00000440232	NM_002691.3	683	cGc/cAc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCC			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	39	586	0	ENST00000234420.5:c.3259_3261dup	p.Pro1087dup	p.P1087dup	ENST00000234420	NM_000179.2	1087	acc/aCCCcc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661581	227661581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	171	874	0	ENST00000305123.5:c.1874G>T	p.Gly625Val	p.G625V	ENST00000305123	NM_005544.2	625	gGc/gTc																																																																															
EP300	2033	MSKCC	GRCh37	22	41564807	41564807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	143	754	0	ENST00000263253.7:c.4108G>A	p.Asp1370Asn	p.D1370N	ENST00000263253	NM_001429.3	1370	Gac/Aac																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960002	134960002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	107	596	0	ENST00000398015.3:c.2359C>A	p.Pro787Thr	p.P787T	ENST00000398015	NM_004441.4	787	Cct/Act																																																																															
ATR	545	MSKCC	GRCh37	3	142268341	142268341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	39	389	0	ENST00000350721.4:c.3151C>T	p.Arg1051Cys	p.R1051C	ENST00000350721	NM_001184.3	1051	Cgt/Tgt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31468095	31468095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	170	724	1	ENST00000344624.3:c.2317G>A	p.Val773Ile	p.V773I	ENST00000344624		773	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112128194	112128194	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	104	484	0	ENST00000257430.4:c.697C>T	p.Gln233Ter	p.Q233*	ENST00000257430	NM_000038.5	233	Cag/Tag																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032240	26032240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	71	391	0	ENST00000244661.2:c.49C>T	p.Pro17Ser	p.P17S	ENST00000244661	NM_003537.3	17	Cca/Tca																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839739	27839739	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	165	718	0	ENST00000328488.2:c.355A>G	p.Thr119Ala	p.T119A	ENST00000328488	NM_003533.2	119	Act/Gct																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805554	32805554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	229	910	0	ENST00000374899.4:c.457G>A	p.Val153Ile	p.V153I	ENST00000374899	NM_018833.2	153	Gtt/Att																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969953	161969953	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746620234		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	134	713	1	ENST00000366898.1:c.1016C>T	p.Ala339Val	p.A339V	ENST00000366898	NM_004562.2	339	gCg/gTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8471080	8471080	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	69	381	0	ENST00000356435.5:c.3419A>G	p.Tyr1140Cys	p.Y1140C	ENST00000356435		1140	tAc/tGc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499806	8499807	+	missense_variant	Missense_Mutation	DNP	CT	CT	AC			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	114	611	1	ENST00000356435.5:c.2162_2163delinsGT	p.Glu721Gly	p.E721G	ENST00000356435		721	gAG/gGT																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98218682	98218682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	110	445	0	ENST00000331920.6:c.3182C>T	p.Ala1061Val	p.A1061V	ENST00000331920	NM_000264.3	1061	gCg/gTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98240363	98240363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	124	550	0	ENST00000331920.6:c.1321C>T	p.Arg441Cys	p.R441C	ENST00000331920	NM_000264.3	441	Cgc/Tgc																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128420055	128420055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	147	743	0	ENST00000265960.3:c.373G>A	p.Glu125Lys	p.E125K	ENST00000265960	NM_001006617.1	125	Gaa/Aaa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396517	139396517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	135	840	0	ENST00000277541.6:c.5408G>A	p.Gly1803Asp	p.G1803D	ENST00000277541	NM_017617.3	1803	gGt/gAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139440184	139440184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	30	98	0	ENST00000277541.6:c.55G>A	p.Ala19Thr	p.A19T	ENST00000277541	NM_017617.3	19	Gca/Aca																																																																															
STAG2	10735	MSKCC	GRCh37	X	123182895	123182895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	58	433	0	ENST00000218089.9:c.860C>T	p.Ala287Val	p.A287V	ENST00000218089	NM_001042749.1	287	gCa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0047717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	252	732	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0047717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	123	334	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2956958	2956958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	222	544	0	ENST00000396946.4:c.2669C>T	p.Ser890Leu	p.S890L	ENST00000396946	NM_032415.4	890	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112170652	112170652	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	68	222	0	ENST00000257430.4:c.1748C>A	p.Ser583Ter	p.S583*	ENST00000257430	NM_000038.5	583	tCa/tAa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434116	121434116	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	229	605	0	ENST00000257555.6:c.1007G>T	p.Ser336Ile	p.S336I	ENST00000257555		336	aGc/aTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29654757	29654757	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	98	262	0	ENST00000358273.4:c.5509G>T	p.Asp1837Tyr	p.D1837Y	ENST00000358273	NM_001042492.2	1837	Gac/Tac																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266661	41266661	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	117	317	0	ENST00000349496.5:c.458T>G	p.Ile153Ser	p.I153S	ENST00000349496	NM_001904.3	153	aTc/aGc																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99808303	99808303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	47	260	0	ENST00000280892.6:c.386G>T	p.Arg129Leu	p.R129L	ENST00000280892	NM_001130678.1	129	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	89	314	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0047888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	51	189	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175360	112175360	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	126	232	0	ENST00000257430.4:c.4069G>T	p.Gly1357Ter	p.G1357*	ENST00000257430	NM_000038.5	1357	Gga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	204	475	0	ENST00000269305.4:c.613T>C	p.Tyr205His	p.Y205H	ENST00000269305	NM_001126112.2	205	Tat/Cat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023853	27023853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	47	223	0	ENST00000324856.7:c.959C>T	p.Pro320Leu	p.P320L	ENST00000324856	NM_006015.4	320	cCc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112175834	112175834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	130	218	0	ENST00000257430.4:c.4543T>C	p.Phe1515Leu	p.F1515L	ENST00000257430	NM_000038.5	1515	Ttt/Ctt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041358	47041358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	207	559	0	ENST00000329236.7:c.1468G>A	p.Asp490Asn	p.D490N	ENST00000329236	NM_001204466.1	490	Gac/Aac																																																																															
MED12	9968	MSKCC	GRCh37	X	70344949	70344949	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs192331892		P-0047888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	194	502	1	ENST00000374080.3:c.2179G>A	p.Asp727Asn	p.D727N	ENST00000374080		727	Gac/Aac																																																																															
NUP93	9688	MSKCC	GRCh37	16	56852646	56852646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	173	379	0	ENST00000308159.5:c.560G>A	p.Arg187Gln	p.R187Q	ENST00000308159	NM_014669.4	187	cGg/cAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118890	70118890	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	262	806	0	ENST00000245479.2:c.462C>A	p.Phe154Leu	p.F154L	ENST00000245479	NM_000346.3	154	ttC/ttA																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0047950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	343	453	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0047950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	125	441	1	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245533	153245533	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	97	314	0	ENST00000281708.4:c.1658A>C	p.His553Pro	p.H553P	ENST00000281708	NM_033632.3	553	cAt/cCt																																																																															
PMS2	5395	MSKCC	GRCh37	7	6042163	6042163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	214	544	0	ENST00000265849.7:c.458G>A	p.Arg153Lys	p.R153K	ENST00000265849	NM_000535.5	153	aGa/aAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0047950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	66	294	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
ARAF	369	MSKCC	GRCh37	X	47428124	47428124	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	212	773	2	ENST00000377045.4:c.1084C>T	p.Arg362Ter	p.R362*	ENST00000377045	NM_001654.4	362	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0047979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	29	241	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0047979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	68	465	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223093	5223093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	62	1120	1	ENST00000357368.4:c.2710C>T	p.Arg904Trp	p.R904W	ENST00000357368	NM_002850.3	904	Cgg/Tgg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374929	45374929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	100	509	0	ENST00000262160.6:c.914C>T	p.Pro305Leu	p.P305L	ENST00000262160	NM_005901.5	305	cCa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0047979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	89	730	0	ENST00000269305.4:c.560-1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
APC	324	MSKCC	GRCh37	5	112175433	112175434	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	33	280	0	ENST00000257430.4:c.4142_4143insT	p.Leu1382ThrfsTer4	p.L1382Tfs*4	ENST00000257430	NM_000038.5	1381	cca/ccTa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929562	44929563	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0047979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	78	446	0	ENST00000377967.4:c.2664dup	p.Ile889HisfsTer17	p.I889Hfs*17	ENST00000377967	NM_021140.2	888	tcc/tCcc																																																																															
APC	324	MSKCC	GRCh37	5	112175360	112175360	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	37	169	0	ENST00000257430.4:c.4069G>T	p.Gly1357Ter	p.G1357*	ENST00000257430	NM_000038.5	1357	Gga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411444	63411444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	49	352	0	ENST00000330258.3:c.1723C>T	p.Arg575Trp	p.R575W	ENST00000330258	NM_152424.3	575	Cgg/Tgg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174395	11174395	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	124	473	0	ENST00000361445.4:c.7280T>G	p.Leu2427Arg	p.L2427R	ENST00000361445	NM_004958.3	2427	cTg/cGg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206908	162206908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	34	299	0	ENST00000366898.1:c.767G>A	p.Arg256His	p.R256H	ENST00000366898	NM_004562.2	256	cGc/cAc																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226253381	226253381	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	14	191	0	ENST00000366813.1:c.153A>T	p.Glu51Asp	p.E51D	ENST00000366813		51	gaA/gaT																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118995	70118995	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	97	831	0	ENST00000245479.2:c.567del	p.Glu190ArgfsTer29	p.E190Rfs*29	ENST00000245479	NM_000346.3	189	gcA/gc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256658	19256658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	103	840	1	ENST00000162023.5:c.1055G>A	p.Arg352Gln	p.R352Q	ENST00000162023		352	cGg/cAg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905573	50905573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	154	1153	1	ENST00000440232.2:c.701C>T	p.Ala234Val	p.A234V	ENST00000440232	NM_002691.3	234	gCa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0048112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	293	661	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971292	13971292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	176	456	1	ENST00000405192.2:c.637C>T	p.Arg213Cys	p.R213C	ENST00000405192	NM_001163147.1	213	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175349	112175353	+	frameshift_variant	Frame_Shift_Del	DEL	AATTT	AATTT	-			P-0048112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	36	255	0	ENST00000257430.4:c.4058_4062del	p.Glu1353ValfsTer20	p.E1353Vfs*20	ENST00000257430	NM_000038.5	1353	gAATTT/g																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508673	106508673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	204	547	1	ENST00000359195.3:c.667G>A	p.Val223Ile	p.V223I	ENST00000359195	NM_002649.2	223	Gtc/Atc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862766	9862766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	348	533	1	ENST00000330684.3:c.2537G>A	p.Arg846His	p.R846H	ENST00000330684	NM_001134407.1	846	cGc/cAc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56792500	56792500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	225	463	0	ENST00000308159.5:c.230G>A	p.Arg77Gln	p.R77Q	ENST00000308159	NM_014669.4	77	cGa/cAa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61720122	61720122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	110	431	0	ENST00000401558.2:c.1312G>A	p.Gly438Arg	p.G438R	ENST00000401558	NM_003400.3	438	Gga/Aga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32171570	32171570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	242	666	0	ENST00000375023.3:c.3208G>A	p.Gly1070Ser	p.G1070S	ENST00000375023	NM_004557.3	1070	Ggt/Agt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741742	145741742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1258	97	771	0	ENST00000428558.2:c.761C>T	p.Pro254Leu	p.P254L	ENST00000428558	NM_004260.3	254	cCc/cTc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925329	114925329	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	166	431	0	ENST00000543371.1:c.1407C>G	p.Cys469Trp	p.C469W	ENST00000543371	NM_001198531.1	469	tgC/tgG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0048220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	267	666	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1962801	1962801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	204	448	0	ENST00000382891.5:c.3295G>A	p.Glu1099Lys	p.E1099K	ENST00000382891	NM_133335.3	1099	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112116523	112116523	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	60	256	0	ENST00000257430.4:c.568G>T	p.Glu190Ter	p.E190*	ENST00000257430	NM_000038.5	190	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	77	261	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0048230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	110	355	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056053	26056067	+	inframe_deletion	In_Frame_Del	DEL	CCTTGGGCTTAGCGG	CCTTGGGCTTAGCGG	-	rs756916945		P-0048230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	120	416	0	ENST00000343677.2:c.590_604del	p.Ala197_Lys201del	p.A197_K201del	ENST00000343677	NM_005319.3	197	gCCGCTAAGCCCAAGGtt/gtt																																																																															
APC	324	MSKCC	GRCh37	5	112175184	112175194	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCTAATACC	CTGCTAATACC	-			P-0048230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	67	196	0	ENST00000257430.4:c.3897_3907del	p.Thr1301SerfsTer10	p.T1301Sfs*10	ENST00000257430	NM_000038.5	1298	tCTGCTAATACC/t																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119857	70119857	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	283	843	0	ENST00000245479.2:c.859G>T	p.Glu287Ter	p.E287*	ENST00000245479	NM_000346.3	287	Gag/Tag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0048242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	70	234	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244098	5244098	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs73545312		P-0048242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	403	885	0	ENST00000357368.4:c.1384G>A	p.Val462Ile	p.V462I	ENST00000357368	NM_002850.3	462	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0048242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	159	237	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89725043	89725043	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0048242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	48	142	0	ENST00000371953.3:c.1027-1G>A		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																																
ATM	472	MSKCC	GRCh37	11	108186757	108186757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	67	354	0	ENST00000278616.4:c.6115G>A	p.Glu2039Lys	p.E2039K	ENST00000278616	NM_000051.3	2039	Gaa/Aaa																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7976192	7976192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	107	691	0	ENST00000319144.4:c.2003G>A	p.Arg668His	p.R668H	ENST00000319144	NM_001139.2	668	cGc/cAc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489870	40489871	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	124	456	0	ENST00000264657.5:c.555dup	p.Gln186AlafsTer35	p.Q186Afs*35	ENST00000264657	NM_139276.2	185	-/G																																																																															
CASP8	841	MSKCC	GRCh37	2	202141548	202141548	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0048242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	77	296	0	ENST00000358485.4:c.838-2A>G		p.X280_splice	ENST00000358485	NM_001080125.1	280																																																																																
MYD88	4615	MSKCC	GRCh37	3	38180390	38180390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	237	791	0	ENST00000396334.3:c.238C>T	p.Gln80Ter	p.Q80*	ENST00000396334	NM_002468.4	80	Caa/Taa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	122	273	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578466	7578466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	298	605	0	ENST00000269305.4:c.464C>A	p.Thr155Asn	p.T155N	ENST00000269305	NM_001126112.2	155	aCc/aAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575200	48575200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	113	198	0	ENST00000342988.3:c.394C>T	p.His132Tyr	p.H132Y	ENST00000342988	NM_005359.5	132	Cac/Tac																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450267	50450267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	212	439	0	ENST00000331340.3:c.451G>A	p.Gly151Arg	p.G151R	ENST00000331340	NM_006060.4	151	Ggg/Agg																																																																															
APC	324	MSKCC	GRCh37	5	112155043	112155043	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0048626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	192	283	0	ENST00000257430.4:c.1312+2T>C		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
PMS1	5378	MSKCC	GRCh37	2	190718969	190718969	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	22	165	0	ENST00000441310.2:c.971C>G	p.Ser324Cys	p.S324C	ENST00000441310	NM_000534.4	324	tCt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0048658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	136	469	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
AR	367	MSKCC	GRCh37	X	66765655	66765655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	205	761	0	ENST00000374690.3:c.667G>A	p.Asp223Asn	p.D223N	ENST00000374690	NM_000044.3	223	Gac/Aac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928108	+	inframe_deletion	In_Frame_Del	DEL	GAAGATTTGCTGAACCCTATTGGTGTTACT	GAAGATTTGCTGAACCCTATTGGTGTTACT	-			P-0048658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	56	435	0	ENST00000263967.3:c.1358_1387del	p.Glu453_Thr462del	p.E453_T462del	ENST00000263967	NM_006218.2	453	GAAGATTTGCTGAACCCTATTGGTGTTACT/-																																																																															
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	60	281	0	ENST00000257430.4:c.3944C>G	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tGa																																																																															
MGA	23269	MSKCC	GRCh37	15	42000019	42000019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	109	517	0	ENST00000219905.7:c.2282C>T	p.Pro761Leu	p.P761L	ENST00000219905	NM_001164273.1	761	cCt/cTt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643348	52643348	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	80	408	1	ENST00000394830.3:c.2548C>T	p.Arg850Ter	p.R850*	ENST00000394830	NM_018313.4	850	Cga/Tga																																																																															
TET2	54790	MSKCC	GRCh37	4	106194031	106194031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	66	283	0	ENST00000380013.4:c.4493G>A	p.Arg1498His	p.R1498H	ENST00000380013	NM_001127208.2	1498	cGt/cAt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061346	38061346	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	187	650	0	ENST00000250448.2:c.643C>T	p.Gln215Ter	p.Q215*	ENST00000250448	NM_004496.3	215	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117755	70117756	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	55	752	0	ENST00000245479.2:c.224dup	p.Ala76GlyfsTer176	p.A76Gfs*176	ENST00000245479	NM_000346.3	75	gag/gAag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120050	70120051	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	10	16	0	ENST00000245479.2:c.1054dup	p.Ala352GlyfsTer226	p.A352Gfs*226	ENST00000245479	NM_000346.3	351	cag/caGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	87	355	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0049065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	50	208	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577599	7577600	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	173	403	0	ENST00000269305.4:c.681dup	p.Asp228Ter	p.D228*	ENST00000269305	NM_001126112.2	227	-/T																																																																															
APC	324	MSKCC	GRCh37	5	112173299	112173299	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0049065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	66	164	0	ENST00000257430.4:c.2008A>T	p.Lys670Ter	p.K670*	ENST00000257430	NM_000038.5	670	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175754	112175755	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0049065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	61	234	0	ENST00000257430.4:c.4464_4465del	p.Leu1488PhefsTer25	p.L1488Ffs*25	ENST00000257430	NM_000038.5	1488	tTA/t																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18719941	18719941	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	41	338	0	ENST00000266497.5:c.3838C>A	p.Leu1280Ile	p.L1280I	ENST00000266497		1280	Cta/Ata																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119692	70119692	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	369	529	0	ENST00000245479.2:c.694C>T	p.Gln232Ter	p.Q232*	ENST00000245479	NM_000346.3	232	Cag/Tag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026833	71026857	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTGCGTTCTTATAAAATTCTTGG	TTCTGCGTTCTTATAAAATTCTTGG	-			P-0049065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	27	186	0	ENST00000318789.4:c.1365_1389del	p.Asn455LysfsTer11	p.N455Kfs*11	ENST00000318789	NM_032682.5	455	aaCCAAGAATTTTATAAGAACGCAGAA/aa																																																																															
TEK	7010	MSKCC	GRCh37	9	27168562	27168563	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	61	376	0	ENST00000380036.4:c.434_435insC	p.Lys145AsnfsTer5	p.K145Nfs*5	ENST00000380036	NM_000459.3	145	aag/aaCg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0049069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	40	356	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	85	404	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0049069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	173	667	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	114	315	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc																																																																															
APC	324	MSKCC	GRCh37	5	112174092	112174093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	80	283	0	ENST00000257430.4:c.2803dup	p.Tyr935LeufsTer5	p.Y935Lfs*5	ENST00000257430	NM_000038.5	934	act/acTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	97	281	0	ENST00000342988.3:c.1157G>T	p.Gly386Val	p.G386V	ENST00000342988	NM_005359.5	386	gGt/gTt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619835	1619835	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	240	867	2	ENST00000344749.5:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000344749	NM_001136139.2	371	Cga/Tga																																																																															
CYLD	1540	MSKCC	GRCh37	16	50827519	50827519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	64	449	1	ENST00000398568.2:c.2404G>A	p.Asp802Asn	p.D802N	ENST00000398568	NM_001042412.1	802	Gat/Aat																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435987	110435987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	228	972	0	ENST00000375856.3:c.2414C>A	p.Ser805Tyr	p.S805Y	ENST00000375856	NM_003749.2	805	tCc/tAc																																																																															
B2M	567	MSKCC	GRCh37	15	45003757	45003866	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGGCCTTAGCTGTGCTCGCGCTACTCTCTCTTTCTGGCCTGGAGGCTATCCAGCGTGAGTCTCTCCTACCCTCCCGCTCTGGTCCTTCCTCTCCCGCTCTGCACCCTCT	GTGGCCTTAGCTGTGCTCGCGCTACTCTCTCTTTCTGGCCTGGAGGCTATCCAGCGTGAGTCTCTCCTACCCTCCCGCTCTGGTCCTTCCTCTCCCGCTCTGCACCCTCT	-			P-0049069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	32	573	0	ENST00000558401.1:c.19_67+61del		p.X7_splice	ENST00000558401	NM_004048.2	7																																																																																
GLI1	2735	MSKCC	GRCh37	12	57864117	57864117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	123	737	0	ENST00000228682.2:c.1594C>T	p.Arg532Cys	p.R532C	ENST00000228682	NM_005269.2	532	Cgc/Tgc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640428	3640428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	101	933	1	ENST00000294008.3:c.3211C>A	p.Pro1071Thr	p.P1071T	ENST00000294008	NM_032444.2	1071	Cca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578448	7578448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	714	898	2	ENST00000269305.4:c.482C>A	p.Ala161Asp	p.A161D	ENST00000269305	NM_001126112.2	161	gCc/gAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	327	364	1	ENST00000349496.5:c.110C>A	p.Ser37Tyr	p.S37Y	ENST00000349496	NM_001904.3	37	tCt/tAt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275649	41275649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	154	486	0	ENST00000349496.5:c.1544G>A	p.Arg515Gln	p.R515Q	ENST00000349496	NM_001904.3	515	cGa/cAa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277899	41277901	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-			P-0049182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	312	475	0	ENST00000349496.5:c.1864_1866del	p.Ala622del	p.A622del	ENST00000349496	NM_001904.3	621	ctTGCt/ctt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143029298	143029298	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	88	314	0	ENST00000262992.4:c.2322C>A	p.Phe774Leu	p.F774L	ENST00000262992	NM_001101669.1	774	ttC/ttA																																																																															
EZH2	2146	MSKCC	GRCh37	7	148523717	148523717	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	84	274	0	ENST00000320356.2:c.736G>C	p.Glu246Gln	p.E246Q	ENST00000320356	NM_004456.4	246	Gaa/Caa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932264	39932264	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	54	916	1	ENST00000378444.4:c.2335G>T	p.Val779Phe	p.V779F	ENST00000378444	NM_001123385.1	779	Gtc/Ttc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	97	369	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	66	162	1	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	57	605	0	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	31	146	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519942		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	75	219	1	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	131	638	2	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	104	330	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	81	236	1	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	110	585	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	40	200	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	182	727	2	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	26	308	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	47	514	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	178	747	5	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	244	426	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
BLM	641	MSKCC	GRCh37	15	91310208	91310208	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs747341586		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	50	137	0	ENST00000355112.3:c.2268del	p.Asp757ThrfsTer4	p.D757Tfs*4	ENST00000355112	NM_000057.2	754	tcA/tc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	60	465	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89857881	89857881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	70	618	4	ENST00000389301.3:c.1289C>T	p.Ala430Val	p.A430V	ENST00000389301	NM_000135.2	430	gCg/gTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	105	313	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175957465	175957465	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	98	354	1	ENST00000367669.3:c.1931del	p.Asn644ThrfsTer3	p.N644Tfs*3	ENST00000367669	NM_022457.5	644	aAc/ac																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910405	29910405	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	117	784	0	ENST00000376809.5:c.73+2T>C		p.X25_splice	ENST00000376809	NM_002116.7	25																																																																																
MSH2	4436	MSKCC	GRCh37	2	47657020	47657020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	87	290	2	ENST00000233146.2:c.1216C>T	p.Arg406Ter	p.R406*	ENST00000233146	NM_000251.2	406	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306553	41306553	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	112	518	1	ENST00000373198.4:c.1106del	p.Gly369ValfsTer28	p.G369Vfs*28	ENST00000373198	NM_133170.3	369	gGt/gt																																																																															
ALK	238	MSKCC	GRCh37	2	29446388	29446388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	197	769	1	ENST00000389048.3:c.3179G>A	p.Arg1060His	p.R1060H	ENST00000389048	NM_004304.4	1060	cGc/cAc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	120	800	0	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913436	32913436	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	93	291	0	ENST00000380152.3:c.4948del	p.Ser1650ValfsTer20	p.S1650Vfs*20	ENST00000380152		1648	gcA/gc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412473	63412473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	131	338	0	ENST00000330258.3:c.694del	p.Gln232LysfsTer50	p.Q232Kfs*50	ENST00000330258	NM_152424.3	232	Caa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86679577	86679577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	118	368	0	ENST00000274376.6:c.2738G>A	p.Arg913Gln	p.R913Q	ENST00000274376	NM_002890.2	913	cGg/cAg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912052	50912052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	161	745	0	ENST00000440232.2:c.1786G>A	p.Val596Ile	p.V596I	ENST00000440232	NM_002691.3	596	Gtc/Atc																																																																															
ALK	238	MSKCC	GRCh37	2	30143204	30143204	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1268240399		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	141	764	1	ENST00000389048.3:c.322del	p.Val108SerfsTer20	p.V108Sfs*20	ENST00000389048	NM_004304.4	108	Gtc/tc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43730536	43730536	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	104	454	1	ENST00000382044.4:c.3177del	p.Thr1060ProfsTer36	p.T1060Pfs*36	ENST00000382044	NM_001141980.1	1059	ccC/cc																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805884	46805884	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	109	627	2	ENST00000290295.7:c.72del	p.Arg25GlyfsTer9	p.R25Gfs*9	ENST00000290295	NM_006361.5	24	ggG/gg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123276929	123276929	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200204947		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	66	382	0	ENST00000358487.5:c.988C>T	p.Arg330Trp	p.R330W	ENST00000358487	NM_000141.4	330	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023010	27023010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	15	76	0	ENST00000324856.7:c.116C>A	p.Ala39Glu	p.A39E	ENST00000324856	NM_006015.4	39	gCg/gAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346437	89346437	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	180	715	1	ENST00000301030.4:c.6513del	p.Val2173SerfsTer2	p.V2173Sfs*2	ENST00000301030	NM_001256183.1	2171	ccC/cc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81891943	81891943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	163	565	1	ENST00000359376.3:c.413C>T	p.Thr138Met	p.T138M	ENST00000359376	NM_002661.3	138	aCg/aTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778282	3778282	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	151	782	1	ENST00000262367.5:c.6766del	p.Leu2256SerfsTer46	p.L2256Sfs*46	ENST00000262367	NM_004380.2	2256	Ctc/tc																																																																															
SMO	6608	MSKCC	GRCh37	7	128845479	128845479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	204	673	1	ENST00000249373.3:c.776C>T	p.Ser259Leu	p.S259L	ENST00000249373	NM_005631.4	259	tCg/tTg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6042169	6042169	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35629870		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	113	453	0	ENST00000265849.7:c.452G>A	p.Arg151His	p.R151H	ENST00000265849	NM_000535.5	151	cGc/cAc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500479	149500479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	139	646	2	ENST00000261799.4:c.2558G>A	p.Arg853Gln	p.R853Q	ENST00000261799	NM_002609.3	853	cGg/cAg																																																																															
ALK	238	MSKCC	GRCh37	2	29443582	29443582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	140	669	0	ENST00000389048.3:c.3635G>A	p.Arg1212His	p.R1212H	ENST00000389048	NM_004304.4	1212	cGc/cAc																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006101	22006101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	168	698	0	ENST00000276925.6:c.302G>A	p.Arg101Gln	p.R101Q	ENST00000276925	NM_004936.3	101	cGg/cAg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786409	135786409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	118	429	1	ENST00000298552.3:c.1121G>A	p.Ser374Asn	p.S374N	ENST00000298552	NM_001162426.1	374	aGt/aAt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118347605	118347605	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756562807		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	147	493	0	ENST00000534358.1:c.3242G>A	p.Arg1081Gln	p.R1081Q	ENST00000534358	NM_005933.3	1081	cGa/cAa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223188	2223188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	162	644	3	ENST00000326181.6:c.800C>T	p.Thr267Met	p.T267M	ENST00000326181	NM_032271.2	267	aCg/aTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223355	36223355	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	195	858	0	ENST00000222270.7:c.5909del	p.Pro1970LeufsTer17	p.P1970Lfs*17	ENST00000222270	NM_014727.1	1969	Ccc/cc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246490641	246490641	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	60	198	2	ENST00000388985.4:c.395-2del		p.X132_splice	ENST00000388985		132																																																																																
ARID5B	84159	MSKCC	GRCh37	10	63851678	63851678	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	60	470	0	ENST00000279873.7:c.2456T>C	p.Leu819Pro	p.L819P	ENST00000279873	NM_032199.2	819	cTc/cCc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94922944	94922944	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	91	235	0	ENST00000536441.1:c.524A>G	p.Gln175Arg	p.Q175R	ENST00000536441	NM_144665.3	175	cAg/cGg																																																																															
ATM	472	MSKCC	GRCh37	11	108203574	108203574	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	59	317	0	ENST00000278616.4:c.7874A>G	p.Asp2625Gly	p.D2625G	ENST00000278616	NM_000051.3	2625	gAt/gGt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373338	118373340	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	89	465	0	ENST00000534358.1:c.6731_6733del	p.Lys2244_Val2245delinsIle	p.K2244_V2245delinsI	ENST00000534358	NM_005933.3	2244	aAAGta/ata																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426380	49426380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	171	733	1	ENST00000301067.7:c.12108G>T	p.Glu4036Asp	p.E4036D	ENST00000301067	NM_003482.3	4036	gaG/gaT																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495713	56495713	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	112	481	0	ENST00000267101.3:c.3903G>T	p.Gln1301His	p.Q1301H	ENST00000267101	NM_001982.3	1301	caG/caT																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112133	115112133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	164	653	1	ENST00000257566.3:c.1607C>T	p.Ala536Val	p.A536V	ENST00000257566	NM_016569.3	536	gCc/gTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133252087	133252087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	172	665	1	ENST00000320574.5:c.1123C>T	p.Arg375Trp	p.R375W	ENST00000320574	NM_006231.2	375	Cgg/Tgg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103528027	103528027	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	75	347	0	ENST00000355739.4:c.3335A>T	p.Asn1112Ile	p.N1112I	ENST00000355739	NM_000123.3	1112	aAt/aTt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639828	3639828	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	173	731	0	ENST00000294008.3:c.3811T>C	p.Ser1271Pro	p.S1271P	ENST00000294008	NM_032444.2	1271	Tcc/Ccc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646281	23646281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	166	539	0	ENST00000261584.4:c.1586C>A	p.Pro529Gln	p.P529Q	ENST00000261584	NM_024675.3	529	cCa/cAa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644873	67644874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	147	508	0	ENST00000264010.4:c.143dup	p.Glu49Ter	p.E49*	ENST00000264010	NM_006565.3	46	-/G																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271789	15271789	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	88	900	1	ENST00000263388.2:c.6650A>G	p.His2217Arg	p.H2217R	ENST00000263388	NM_000435.2	2217	cAt/cGt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266758	18266758	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	184	743	1	ENST00000222254.8:c.70del	p.Glu24SerfsTer9	p.E24Sfs*9	ENST00000222254	NM_005027.3	23	ctG/ct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218612	36218612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	175	762	0	ENST00000222270.7:c.4316G>A	p.Gly1439Glu	p.G1439E	ENST00000222270	NM_014727.1	1439	gGg/gAg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47639556	47639557	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	55	145	0	ENST00000233146.2:c.651dup	p.Gln218SerfsTer14	p.Q218Sfs*14	ENST00000233146	NM_000251.2	217	att/aTtt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561123	9561123	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	49	329	2	ENST00000353224.5:c.659A>G	p.Gln220Arg	p.Q220R	ENST00000353224	NM_177990.2	220	cAg/cGg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498420	89498420	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	35	304	0	ENST00000336596.2:c.2392T>C	p.Tyr798His	p.Y798H	ENST00000336596	NM_005233.5	798	Tac/Cac																																																																															
ATR	545	MSKCC	GRCh37	3	142188982	142188982	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	58	245	1	ENST00000350721.4:c.6265C>T	p.Arg2089Ter	p.R2089*	ENST00000350721	NM_001184.3	2089	Cga/Tga																																																																															
TP63	8626	MSKCC	GRCh37	3	189612241	189612241	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	130	462	0	ENST00000264731.3:c.1993A>G	p.Met665Val	p.M665V	ENST00000264731	NM_003722.4	665	Atg/Gtg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747995	41747996	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCG			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	10	89	0	ENST00000226382.2:c.773_774insCGC	p.Ala260dup	p.A260dup	ENST00000226382	NM_003924.3	260	gcg/gcCGCg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541682	187541682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	75	371	0	ENST00000441802.2:c.6058G>A	p.Asp2020Asn	p.D2020N	ENST00000441802	NM_005245.3	2020	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112174086	112174089	+	frameshift_variant	Frame_Shift_Del	DEL	CAAA	CAAA	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	80	280	0	ENST00000257430.4:c.2797_2800del	p.Asn933LeufsTer21	p.N933Lfs*21	ENST00000257430	NM_000038.5	932	tCAAAc/tc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55223578	55223578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	170	616	1	ENST00000275493.2:c.945C>A	p.Ser315Arg	p.S315R	ENST00000275493	NM_005228.3	315	agC/agA																																																																															
MET	4233	MSKCC	GRCh37	7	116436129	116436129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	108	398	0	ENST00000397752.3:c.4124C>T	p.Ala1375Val	p.A1375V	ENST00000397752	NM_000245.2	1375	gCt/gTt																																																																															
EZH2	2146	MSKCC	GRCh37	7	148526902	148526902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	56	171	0	ENST00000320356.2:c.402G>A	p.Met134Ile	p.M134I	ENST00000320356	NM_004456.4	134	atG/atA																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194670	29194670	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	110	750	1	ENST00000240100.2:c.1058G>T	p.Arg353Leu	p.R353L	ENST00000240100	NM_001394.6	353	cGg/cTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	202	274	1	ENST00000374080.3:c.130G>A	p.Gly44Ser	p.G44S	ENST00000374080		44	Ggt/Agt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286205	66286205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	55	220	2	ENST00000273854.3:c.1481G>A	p.Arg494His	p.R494H	ENST00000273854	NM_004439.5	494	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	330	731	0	ENST00000269305.4:c.596del	p.Gly199GlufsTer48	p.G199Efs*48	ENST00000269305	NM_001126112.2	199	gGa/ga																																																																															
APC	324	MSKCC	GRCh37	5	112175569	112175569	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	48	317	0	ENST00000257430.4:c.4280del	p.Pro1427LeufsTer46	p.P1427Lfs*46	ENST00000257430	NM_000038.5	1426	agC/ag																																																																															
PGR	5241	MSKCC	GRCh37	11	100998468	100998468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	276	658	0	ENST00000325455.5:c.1334G>A	p.Ser445Asn	p.S445N	ENST00000325455	NM_001202474.3	445	aGt/aAt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52719887	52719887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	106	742	0	ENST00000322088.6:c.1099C>T	p.Pro367Ser	p.P367S	ENST00000322088	NM_014225.5	367	Ccc/Tcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0050069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	248	452	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0050069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	421	732	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913476		P-0050069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	321	642	1	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	97	295	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123247516	123247516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	290	555	0	ENST00000358487.5:c.1975A>G	p.Lys659Glu	p.K659E	ENST00000358487	NM_000141.4	659	Aag/Gag																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175996801	175996801	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	263	524	0	ENST00000367669.3:c.1636G>T	p.Asp546Tyr	p.D546Y	ENST00000367669	NM_022457.5	546	Gac/Tac																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941231	71941231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	208	1055	0	ENST00000298229.2:c.1006G>A	p.Val336Met	p.V336M	ENST00000298229	NM_001567.3	336	Gtg/Atg																																																																															
RAD52	5893	MSKCC	GRCh37	12	1039258	1039258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	145	630	1	ENST00000358495.3:c.239G>T	p.Gly80Val	p.G80V	ENST00000358495	NM_134424.2	80	gGt/gTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41268805	41268805	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	424	547	0	ENST00000349496.5:c.1043C>A	p.Ser348Tyr	p.S348Y	ENST00000349496	NM_001904.3	348	tCt/tAt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288244	33288244	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	335	642	0	ENST00000374542.5:c.1164G>T	p.Glu388Asp	p.E388D	ENST00000374542	NM_001141970.1	388	gaG/gaT																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061221	38061232	+	inframe_deletion	In_Frame_Del	DEL	GTTCTCGAACAT	GTTCTCGAACAT	-			P-0050083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	326	525	0	ENST00000250448.2:c.757_768del	p.Met253_Asn256del	p.M253_N256del	ENST00000250448	NM_004496.3	253	ATGTTCGAGAAC/-																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749305	43749305	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	542	507	1	ENST00000382044.4:c.1501G>T	p.Glu501Ter	p.E501*	ENST00000382044	NM_001141980.1	501	Gaa/Taa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991847	72991848	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	357	554	1	ENST00000268489.5:c.2197dup	p.Tyr733LeufsTer16	p.Y733Lfs*16	ENST00000268489	NM_006885.3	733	tac/tTac																																																																															
TET2	54790	MSKCC	GRCh37	4	106155907	106155908	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	261	364	0	ENST00000380013.4:c.808_809insT	p.Thr270IlefsTer12	p.T270Ifs*12	ENST00000380013	NM_001127208.2	270	acc/aTcc																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0050143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	84	368	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	188	557	1	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0050143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	59	404	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956723	68956723	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0050143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	86	475	0	ENST00000288368.4:c.841C>T	p.Arg281Trp	p.R281W	ENST00000288368	NM_024870.2	281	Cgg/Tgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711003	114711004	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0050143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	85	314	0	ENST00000543371.1:c.229_230del	p.Asp77GlnfsTer19	p.D77Qfs*19	ENST00000543371	NM_001198531.1	76	cGA/c																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67358653	67358653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	44	565	0	ENST00000327367.4:c.161C>A	p.Ala54Asp	p.A54D	ENST00000327367	NM_005902.3	54	gCc/gAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5243947	5243947	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	83	544	1	ENST00000357368.4:c.1535T>C	p.Leu512Pro	p.L512P	ENST00000357368	NM_002850.3	512	cTc/cCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	279	403	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0050152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	140	242	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982331	201982332	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0050152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	334	849	0	ENST00000359651.3:c.715dup	p.Asp239GlyfsTer62	p.D239Gfs*62	ENST00000359651		237	aag/aaGg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920404	114920404	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	281	467	0	ENST00000543371.1:c.1345G>C	p.Ala449Pro	p.A449P	ENST00000543371	NM_001198531.1	449	Gca/Cca																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67198851	67198851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	201	424	0	ENST00000312629.5:c.322C>T	p.Arg108Cys	p.R108C	ENST00000312629	NM_003952.2	108	Cgc/Tgc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920411	114920412	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0050152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	298	470	0	ENST00000543371.1:c.1353dup	p.Gly452ArgfsTer3	p.G452Rfs*3	ENST00000543371	NM_001198531.1	451	ttc/ttCc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0050213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	121	225	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0050213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	68	295	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	274	646	0	ENST00000269305.4:c.577C>A	p.His193Asn	p.H193N	ENST00000269305	NM_001126112.2	193	Cat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	80	195	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030224	180030224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	303	762	0	ENST00000261937.6:c.4060C>T	p.Arg1354Cys	p.R1354C	ENST00000261937	NM_182925.4	1354	Cgc/Tgc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965472	68965472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200682883		P-0050213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	95	523	1	ENST00000288368.4:c.1084C>T	p.Arg362Trp	p.R362W	ENST00000288368	NM_024870.2	362	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	99	471	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	351	965	2	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	90	236	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138456719	138456719	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	26	375	0	ENST00000289153.2:c.631A>G	p.Ser211Gly	p.S211G	ENST00000289153	NM_006219.2	211	Agc/Ggc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0050246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	15	330	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	28	727	0	ENST00000269305.4:c.842A>G	p.Asp281Gly	p.D281G	ENST00000269305	NM_001126112.2	281	gAc/gGc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0050246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	38	458	4	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871053	12871053	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	47	365	0	ENST00000228872.4:c.285del	p.Gly97ValfsTer22	p.G97Vfs*22	ENST00000228872	NM_004064.3	94	Ccc/cc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034435	47034435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	37	664	0	ENST00000329236.7:c.289G>A	p.Ala97Thr	p.A97T	ENST00000329236	NM_001204466.1	97	Gcc/Acc																																																																															
B2M	567	MSKCC	GRCh37	15	45007689	45007690	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0050246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	30	328	0	ENST00000558401.1:c.137_138del	p.Tyr46CysfsTer10	p.Y46Cfs*10	ENST00000558401	NM_004048.2	46	TAt/t																																																																															
TEK	7010	MSKCC	GRCh37	9	27204926	27204926	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	47	455	0	ENST00000380036.4:c.2232del	p.Lys745ArgfsTer5	p.K745Rfs*5	ENST00000380036	NM_000459.3	743	Ggg/gg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425694	49425694	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	81	850	1	ENST00000301067.7:c.12794del	p.Gly4265AlafsTer13	p.G4265Afs*13	ENST00000301067	NM_003482.3	4265	gGc/gc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972645	32972645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	33	391	0	ENST00000380152.3:c.9995C>T	p.Ser3332Phe	p.S3332F	ENST00000380152		3332	tCt/tTt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106094	8106094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	114	487	0	ENST00000346208.3:c.914G>A	p.Arg305Gln	p.R305Q	ENST00000346208		305	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380223	25380223	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	102	443	0	ENST00000256078.4:c.235C>A	p.Leu79Ile	p.L79I	ENST00000256078	NM_033360.2	79	Ctt/Att																																																																															
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	137	538	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604736	48604736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	107	389	0	ENST00000342988.3:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000342988	NM_005359.5	520	Gaa/Taa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210733	5210733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	48	837	1	ENST00000357368.4:c.5318C>T	p.Ser1773Leu	p.S1773L	ENST00000357368	NM_002850.3	1773	tCg/tTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857784	9857784	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145861983		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	120	573	0	ENST00000330684.3:c.3617G>A	p.Arg1206Gln	p.R1206Q	ENST00000330684	NM_001134407.1	1206	cGa/cAa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163749	152163749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	80	455	0	ENST00000206249.3:c.470G>A	p.Arg157Gln	p.R157Q	ENST00000206249	NM_000125.3	157	cGa/cAa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46125024	46125024	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	57	211	0	ENST00000334344.6:c.211G>T	p.Glu71Ter	p.E71*	ENST00000334344	NM_152641.2	71	Gaa/Taa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95577791	95577791	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	67	167	0	ENST00000343455.3:c.2119G>A	p.Glu707Lys	p.E707K	ENST00000343455	NM_177438.2	707	Gaa/Aaa																																																																															
CCNE1	898	MSKCC	GRCh37	19	30311662	30311662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	126	346	0	ENST00000262643.3:c.516C>A	p.Phe172Leu	p.F172L	ENST00000262643	NM_001238.2	172	ttC/ttA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	146	500	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28588626	28588626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	160	410	0	ENST00000241453.7:c.2822C>T	p.Ser941Leu	p.S941L	ENST00000241453	NM_004119.2	941	tCg/tTg																																																																															
RHOA	387	MSKCC	GRCh37	3	49405971	49405971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	149	528	0	ENST00000418115.1:c.167C>T	p.Ala56Val	p.A56V	ENST00000418115	NM_001664.2	56	gCt/gTt																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50481162	50481162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	85	345	0	ENST00000394963.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000394963	NM_003076.4	183	cGa/cAa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47710037	47710037	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	59	181	0	ENST00000233146.2:c.2754G>T	p.Lys918Asn	p.K918N	ENST00000233146	NM_000251.2	918	aaG/aaT																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30325762	30325762	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	74	247	0	ENST00000322652.5:c.1960C>T	p.Arg654Ter	p.R654*	ENST00000322652	NM_015355.2	654	Cga/Tga																																																																															
MET	4233	MSKCC	GRCh37	7	116418997	116418997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	27	203	0	ENST00000397752.3:c.3508C>T	p.Arg1170Ter	p.R1170*	ENST00000397752	NM_000245.2	1170	Cga/Tga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176662843	176662843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	86	341	0	ENST00000439151.2:c.3818G>A	p.Arg1273His	p.R1273H	ENST00000439151	NM_022455.4	1273	cGc/cAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812293	212812293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	53	301	0	ENST00000342788.4:c.283C>T	p.Arg95Cys	p.R95C	ENST00000342788	NM_005235.2	95	Cgt/Tgt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468516	89468516	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1453560937		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	77	279	0	ENST00000336596.2:c.2050C>T	p.Arg684Ter	p.R684*	ENST00000336596	NM_005233.5	684	Cga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043904	180043904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56082504		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	118	719	0	ENST00000261937.6:c.3092G>A	p.Arg1031Gln	p.R1031Q	ENST00000261937	NM_182925.4	1031	cGa/cAa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857127	9857127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	62	304	0	ENST00000330684.3:c.4274C>T	p.Ser1425Leu	p.S1425L	ENST00000330684	NM_001134407.1	1425	tCg/tTg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095836	178095836	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1328262363		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	94	425	0	ENST00000397062.3:c.1495C>T	p.Arg499Trp	p.R499W	ENST00000397062	NM_006164.4	499	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	66	280	0	ENST00000257430.4:c.4199C>T	p.Ser1400Leu	p.S1400L	ENST00000257430	NM_000038.5	1400	tCg/tTg																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127915943	127915943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	106	453	1	ENST00000373547.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000373547	NM_002721.4	180	Gaa/Aaa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023019	150023019	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	136	600	0	ENST00000253339.5:c.244C>T	p.Arg82Ter	p.R82*	ENST00000253339		82	Cga/Tga																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56772411	56772411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	112	512	1	ENST00000337432.4:c.265G>A	p.Glu89Lys	p.E89K	ENST00000337432	NM_058216.2	89	Gaa/Aaa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106524675	106524675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	60	265	0	ENST00000359195.3:c.2836G>A	p.Asp946Asn	p.D946N	ENST00000359195	NM_002649.2	946	Gac/Aac																																																																															
APC	324	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	74	333	0	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29676141	29676141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	78	235	0	ENST00000358273.4:c.7193A>G	p.Tyr2398Cys	p.Y2398C	ENST00000358273	NM_001042492.2	2398	tAc/tGc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198270162	198270162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	82	312	0	ENST00000335508.6:c.1274G>A	p.Arg425Gln	p.R425Q	ENST00000335508	NM_012433.2	425	cGa/cAa																																																																															
CBL	867	MSKCC	GRCh37	11	119169179	119169179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150811339		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	41	507	1	ENST00000264033.4:c.2363G>A	p.Arg788Gln	p.R788Q	ENST00000264033	NM_005188.3	788	cGa/cAa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209264	98209264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	170	796	0	ENST00000331920.6:c.4274C>T	p.Ser1425Leu	p.S1425L	ENST00000331920	NM_000264.3	1425	tCg/tTg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729271	41729271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	73	404	0	ENST00000242208.4:c.1258G>A	p.Val420Met	p.V420M	ENST00000242208	NM_002192.2	420	Gtg/Atg																																																																															
CDK6	1021	MSKCC	GRCh37	7	92404119	92404119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	111	397	0	ENST00000265734.4:c.260G>A	p.Arg87Gln	p.R87Q	ENST00000265734	NM_001259.6	87	cGa/cAa																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72891539	72891539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	35	358	0	ENST00000325599.8:c.223C>T	p.Arg75Cys	p.R75C	ENST00000325599	NM_018130.2	75	Cgc/Tgc																																																																															
EED	8726	MSKCC	GRCh37	11	85989562	85989562	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	95	318	0	ENST00000263360.6:c.1321C>T	p.Arg441Ter	p.R441*	ENST00000263360	NM_003797.3	441	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	115	209	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173350	112173350	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	64	292	0	ENST00000257430.4:c.2059C>A	p.Leu687Ile	p.L687I	ENST00000257430	NM_000038.5	687	Ctc/Atc																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22162055	22162055	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	33	458	0	ENST00000215832.6:c.200G>T	p.Arg67Ile	p.R67I	ENST00000215832	NM_002745.4	67	aGa/aTa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73347916	73347916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139907646		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	72	224	0	ENST00000377767.4:c.1145G>A	p.Arg382Gln	p.R382Q	ENST00000377767	NM_014953.3	382	cGa/cAa																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971370	13971370	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748346103		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	82	333	0	ENST00000405192.2:c.559C>T	p.Arg187Cys	p.R187C	ENST00000405192	NM_001163147.1	187	Cgc/Tgc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419956	152419956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	40	693	0	ENST00000206249.3:c.1643G>A	p.Arg548His	p.R548H	ENST00000206249	NM_000125.3	548	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112174119	112174119	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	78	285	0	ENST00000257430.4:c.2828C>A	p.Ser943Ter	p.S943*	ENST00000257430	NM_000038.5	943	tCa/tAa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066675	94066675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	110	495	2	ENST00000369303.4:c.1084G>A	p.Asp362Asn	p.D362N	ENST00000369303	NM_004440.3	362	Gat/Aat																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444384	50444384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	90	410	0	ENST00000331340.3:c.314C>T	p.Ser105Leu	p.S105L	ENST00000331340	NM_006060.4	105	tCg/tTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008201	29008201	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	59	278	0	ENST00000282397.4:c.670C>T	p.Arg224Ter	p.R224*	ENST00000282397	NM_002019.4	224	Cga/Tga																																																																															
MED12	9968	MSKCC	GRCh37	X	70347294	70347294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	108	522	0	ENST00000374080.3:c.2958G>T	p.Lys986Asn	p.K986N	ENST00000374080		986	aaG/aaT																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88677032	88677032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	82	257	2	ENST00000372037.3:c.817C>T	p.Arg273Ter	p.R273*	ENST00000372037	NM_004329.2	273	Cga/Tga																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274877	41274877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	120	398	0	ENST00000349496.5:c.1127G>A	p.Arg376His	p.R376H	ENST00000349496	NM_001904.3	376	cGt/cAt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73333960	73333960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	92	348	0	ENST00000377767.4:c.2850G>T	p.Lys950Asn	p.K950N	ENST00000377767	NM_014953.3	950	aaG/aaT																																																																															
NUP93	9688	MSKCC	GRCh37	16	56862974	56862974	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	103	419	1	ENST00000308159.5:c.880C>T	p.Arg294Ter	p.R294*	ENST00000308159	NM_014669.4	294	Cga/Tga																																																																															
ATRX	546	MSKCC	GRCh37	X	76938406	76938406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	113	483	0	ENST00000373344.5:c.2342G>A	p.Arg781Gln	p.R781Q	ENST00000373344	NM_000489.3	781	cGa/cAa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247418	71247418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	159	652	0	ENST00000318789.4:c.115G>A	p.Gly39Arg	p.G39R	ENST00000318789	NM_032682.5	39	Gga/Aga																																																																															
EED	8726	MSKCC	GRCh37	11	85963241	85963241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	46	258	0	ENST00000263360.6:c.319G>A	p.Glu107Lys	p.E107K	ENST00000263360	NM_003797.3	107	Gaa/Aaa																																																																															
WT1	7490	MSKCC	GRCh37	11	32414232	32414232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	91	332	0	ENST00000332351.3:c.1319G>A	p.Arg440Lys	p.R440K	ENST00000332351	NM_024426.4	440	aGa/aAa																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867256	45867256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	158	942	0	ENST00000391945.4:c.937G>A	p.Glu313Lys	p.E313K	ENST00000391945	NM_000400.3	313	Gaa/Aaa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55140704	55140704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	43	515	0	ENST00000257290.5:c.1565G>A	p.Arg522His	p.R522H	ENST00000257290	NM_006206.4	522	cGt/cAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624245	89624245	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	58	211	0	ENST00000371953.3:c.19G>T	p.Glu7Ter	p.E7*	ENST00000371953	NM_000314.4	7	Gag/Tag																																																																															
ARAF	369	MSKCC	GRCh37	X	47428244	47428244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	177	774	0	ENST00000377045.4:c.1204G>A	p.Asp402Asn	p.D402N	ENST00000377045	NM_001654.4	402	Gac/Aac																																																																															
FYN	2534	MSKCC	GRCh37	6	112024169	112024169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	75	381	0	ENST00000368678.4:c.616C>T	p.Arg206Cys	p.R206C	ENST00000368678		206	Cgc/Tgc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128038082	128038082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	119	413	0	ENST00000285398.2:c.1468G>A	p.Glu490Lys	p.E490K	ENST00000285398	NM_000122.1	490	Gaa/Aaa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185181425	185181425	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1435276633		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	96	371	0	ENST00000265026.3:c.1366C>T	p.Arg456Ter	p.R456*	ENST00000265026	NM_004721.4	456	Cga/Tga																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793716	89793716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	99	321	0	ENST00000336032.3:c.785C>T	p.Ser262Leu	p.S262L	ENST00000336032	NM_006813.2	262	tCg/tTg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984773	11984773	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	78	316	0	ENST00000353533.5:c.319G>T	p.Glu107Ter	p.E107*	ENST00000353533	NM_003010.3	107	Gaa/Taa																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626461	12626461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	99	480	0	ENST00000251849.4:c.1688G>A	p.Arg563Gln	p.R563Q	ENST00000251849	NM_002880.3	563	cGa/cAa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918695	44918695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	84	454	2	ENST00000377967.4:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000377967	NM_021140.2	393	cGa/cAa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871797	12871797	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	78	179	0	ENST00000228872.4:c.514G>T	p.Glu172Ter	p.E172*	ENST00000228872	NM_004064.3	172	Gaa/Taa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827580	72827580	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	136	540	0	ENST00000268489.5:c.9001G>T	p.Glu3001Ter	p.E3001*	ENST00000268489	NM_006885.3	3001	Gaa/Taa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39570469	39570469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	14	138	0	ENST00000262039.4:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000262039	NM_002647.2	222	cGa/cAa																																																																															
REL	5966	MSKCC	GRCh37	2	61128173	61128173	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	71	194	0	ENST00000295025.8:c.349G>T	p.Glu117Ter	p.E117*	ENST00000295025	NM_002908.2	117	Gaa/Taa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435088	18435088	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	81	296	0	ENST00000266497.5:c.73C>A	p.Leu25Ile	p.L25I	ENST00000266497		25	Ctc/Atc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95596408	95596408	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775207591		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	81	257	0	ENST00000343455.3:c.560G>A	p.Arg187Gln	p.R187Q	ENST00000343455	NM_177438.2	187	cGa/cAa																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650601	48650601	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140561920		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	119	743	1	ENST00000376670.3:c.571C>T	p.Arg191Cys	p.R191C	ENST00000376670	NM_002049.3	191	Cgt/Tgt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58701094	58701094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	105	499	0	ENST00000305921.3:c.685G>A	p.Glu229Lys	p.E229K	ENST00000305921	NM_003620.3	229	Gaa/Aaa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81957133	81957133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	148	607	2	ENST00000359376.3:c.2351G>A	p.Arg784Gln	p.R784Q	ENST00000359376	NM_002661.3	784	cGa/cAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748583	40748583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	85	396	0	ENST00000373198.4:c.2933C>T	p.Ala978Val	p.A978V	ENST00000373198	NM_133170.3	978	gCg/gTg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56409145	56409145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	75	320	1	ENST00000348428.3:c.1652G>A	p.Arg551Gln	p.R551Q	ENST00000348428	NM_006785.3	551	cGa/cAa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11100016	11100016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	171	670	2	ENST00000344626.4:c.1142G>A	p.Arg381Gln	p.R381Q	ENST00000344626	NM_003072.3	381	cGa/cAa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88670400	88670400	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs140016144		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	67	299	1	ENST00000360948.2:c.1286C>A	p.Thr429Asn	p.T429N	ENST00000360948	NM_001012338.2	429	aCt/aAt																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137525525	137525525	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146687518		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	32	466	0	ENST00000367739.4:c.490G>A	p.Glu164Lys	p.E164K	ENST00000367739	NM_000416.2	164	Gaa/Aaa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638900	176638900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	138	535	0	ENST00000439151.2:c.3500G>A	p.Arg1167His	p.R1167H	ENST00000439151	NM_022455.4	1167	cGc/cAc																																																																															
TEK	7010	MSKCC	GRCh37	9	27158095	27158095	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	35	444	1	ENST00000380036.4:c.319C>T	p.Arg107Ter	p.R107*	ENST00000380036	NM_000459.3	107	Cga/Tga																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662700	117662700	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	111	373	1	ENST00000368508.3:c.4765G>T	p.Glu1589Ter	p.E1589*	ENST00000368508	NM_002944.2	1589	Gaa/Taa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513314	106513314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	85	323	0	ENST00000359195.3:c.2218G>A	p.Glu740Lys	p.E740K	ENST00000359195	NM_002649.2	740	Gag/Aag																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246518379	246518379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	109	394	0	ENST00000388985.4:c.182G>A	p.Arg61Gln	p.R61Q	ENST00000388985		61	cGa/cAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532732	187532732	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	122	494	0	ENST00000441802.2:c.9661C>A	p.Leu3221Ile	p.L3221I	ENST00000441802	NM_005245.3	3221	Ctt/Att																																																																															
NBN	4683	MSKCC	GRCh37	8	90955524	90955524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	35	386	1	ENST00000265433.3:c.2141G>A	p.Arg714Gln	p.R714Q	ENST00000265433	NM_002485.4	714	cGa/cAa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223853	53223853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	199	966	3	ENST00000375401.3:c.3506C>T	p.Ser1169Leu	p.S1169L	ENST00000375401	NM_004187.3	1169	tCg/tTg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001395	150001395	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	30	419	0	ENST00000253339.5:c.2209C>T	p.Arg737Ter	p.R737*	ENST00000253339		737	Cga/Tga																																																																															
MYD88	4615	MSKCC	GRCh37	3	38180252	38180252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	170	806	0	ENST00000396334.3:c.100C>T	p.Pro34Ser	p.P34S	ENST00000396334	NM_002468.4	34	Ccc/Tcc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992930	72992930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	180	790	1	ENST00000268489.5:c.1115G>A	p.Arg372Gln	p.R372Q	ENST00000268489	NM_006885.3	372	cGa/cAa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193116996	193116996	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	72	237	0	ENST00000367435.3:c.730-1G>T		p.X244_splice	ENST00000367435	NM_024529.4	244																																																																																
ATRX	546	MSKCC	GRCh37	X	76937553	76937553	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	72	326	0	ENST00000373344.5:c.3195G>T	p.Glu1065Asp	p.E1065D	ENST00000373344	NM_000489.3	1065	gaG/gaT																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439945	56439945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	197	703	0	ENST00000407977.2:c.647C>T	p.Ser216Leu	p.S216L	ENST00000407977		216	tCg/tTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931826	68931826	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	106	450	1	ENST00000288368.4:c.256G>T	p.Glu86Ter	p.E86*	ENST00000288368	NM_024870.2	86	Gaa/Taa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932000	39932000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	51	725	2	ENST00000378444.4:c.2599G>A	p.Glu867Lys	p.E867K	ENST00000378444	NM_001123385.1	867	Gaa/Aaa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413077	63413077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	166	808	1	ENST00000330258.3:c.90G>T	p.Lys30Asn	p.K30N	ENST00000330258	NM_152424.3	30	aaG/aaT																																																																															
WT1	7490	MSKCC	GRCh37	11	32417946	32417946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	117	455	0	ENST00000332351.3:c.1106G>A	p.Arg369Gln	p.R369Q	ENST00000332351	NM_024426.4	369	cGa/cAa																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4117503	4117503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	23	397	0	ENST00000262948.5:c.217G>A	p.Glu73Lys	p.E73K	ENST00000262948	NM_030662.3	73	Gaa/Aaa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52582249	52582249	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	22	199	1	ENST00000394830.3:c.4579C>T	p.Arg1527Ter	p.R1527*	ENST00000394830	NM_018313.4	1527	Cga/Tga																																																																															
MSH3	4437	MSKCC	GRCh37	5	79961137	79961137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	128	434	0	ENST00000265081.6:c.534G>T	p.Lys178Asn	p.K178N	ENST00000265081	NM_002439.4	178	aaG/aaT																																																																															
RAD50	10111	MSKCC	GRCh37	5	131924402	131924402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	87	262	0	ENST00000265335.6:c.1075C>T	p.Arg359Cys	p.R359C	ENST00000265335		359	Cgc/Tgc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797788	32797788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	48	615	0	ENST00000374899.4:c.1714G>A	p.Glu572Lys	p.E572K	ENST00000374899	NM_018833.2	572	Gaa/Aaa																																																																															
MET	4233	MSKCC	GRCh37	7	116339776	116339776	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367722737		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	101	381	0	ENST00000397752.3:c.638C>T	p.Ser213Leu	p.S213L	ENST00000397752	NM_000245.2	213	tCg/tTg																																																																															
SYK	6850	MSKCC	GRCh37	9	93650169	93650169	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	74	428	0	ENST00000375746.1:c.1720C>T	p.Arg574Ter	p.R574*	ENST00000375746	NM_001174167.1	574	Cga/Tga																																																																															
EP300	2033	MSKCC	GRCh37	22	41547973	41547973	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	146	593	0	ENST00000263253.7:c.2954A>G	p.Asp985Gly	p.D985G	ENST00000263253	NM_001429.3	985	gAt/gGt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211219	36211219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	250	913	1	ENST00000222270.7:c.970G>A	p.Glu324Lys	p.E324K	ENST00000222270	NM_014727.1	324	Gaa/Aaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69136820	69136820	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	88	422	2	ENST00000288368.4:c.4734G>T	p.Lys1578Asn	p.K1578N	ENST00000288368	NM_024870.2	1578	aaG/aaT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557804	187557804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	111	404	0	ENST00000441802.2:c.3907G>A	p.Glu1303Lys	p.E1303K	ENST00000441802	NM_005245.3	1303	Gaa/Aaa																																																																															
INSR	3643	MSKCC	GRCh37	19	7125473	7125473	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913144		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	64	749	1	ENST00000302850.5:c.3079C>T	p.Arg1027Ter	p.R1027*	ENST00000302850	NM_000208.2	1027	Cga/Tga																																																																															
RB1	5925	MSKCC	GRCh37	13	48921968	48921968	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	77	186	0	ENST00000267163.4:c.508G>T	p.Glu170Ter	p.E170*	ENST00000267163	NM_000321.2	170	Gaa/Taa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436148	56436148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	47	602	0	ENST00000407977.2:c.989G>A	p.Arg330Gln	p.R330Q	ENST00000407977		330	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112179582	112179582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	65	314	0	ENST00000257430.4:c.8291C>T	p.Ser2764Phe	p.S2764F	ENST00000257430	NM_000038.5	2764	tCt/tTt																																																																															
ABL1	25	MSKCC	GRCh37	9	133750417	133750417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	148	524	0	ENST00000318560.5:c.1248C>A	p.Phe416Leu	p.F416L	ENST00000318560	NM_005157.4	416	ttC/ttA																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115273218	115273218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	89	430	0	ENST00000438362.2:c.1240C>T	p.Arg414Cys	p.R414C	ENST00000438362	NM_001242891.1	414	Cgt/Tgt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69031690	69031690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	99	389	0	ENST00000288368.4:c.3445C>T	p.Arg1149Cys	p.R1149C	ENST00000288368	NM_024870.2	1149	Cgc/Tgc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95599661	95599661	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	79	310	0	ENST00000343455.3:c.135A>C	p.Arg45Ser	p.R45S	ENST00000343455	NM_177438.2	45	agA/agC																																																																															
ALK	238	MSKCC	GRCh37	2	29443676	29443676	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56315533		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	133	635	1	ENST00000389048.3:c.3541C>T	p.Arg1181Cys	p.R1181C	ENST00000389048	NM_004304.4	1181	Cgc/Tgc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350734	89350734	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146294483		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	199	648	1	ENST00000301030.4:c.2216C>T	p.Ser739Leu	p.S739L	ENST00000301030	NM_001256183.1	739	tCg/tTg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123243238	123243238	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	159	697	1	ENST00000358487.5:c.2275C>T	p.Arg759Ter	p.R759*	ENST00000358487	NM_000141.4	759	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112176209	112176209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	94	422	0	ENST00000257430.4:c.4918C>T	p.Arg1640Trp	p.R1640W	ENST00000257430	NM_000038.5	1640	Cgg/Tgg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816896	32816896	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	102	409	0	ENST00000354258.4:c.1429-1G>T		p.X477_splice	ENST00000354258	NM_000593.5	477																																																																																
DDR2	4921	MSKCC	GRCh37	1	162729635	162729635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	51	527	0	ENST00000367921.3:c.721G>A	p.Asp241Asn	p.D241N	ENST00000367921	NM_006182.2	241	Gat/Aat																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902934	1902934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	156	562	1	ENST00000382891.5:c.553G>A	p.Glu185Lys	p.E185K	ENST00000382891	NM_133335.3	185	Gaa/Aaa																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818213	32818213	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs143800384		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	187	725	1	ENST00000354258.4:c.1312C>T	p.Arg438Ter	p.R438*	ENST00000354258	NM_000593.5	438	Cga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114169	115114169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	128	584	0	ENST00000257566.3:c.1048G>A	p.Ala350Thr	p.A350T	ENST00000257566	NM_016569.3	350	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112175925	112175925	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	49	212	0	ENST00000257430.4:c.4634C>A	p.Ser1545Ter	p.S1545*	ENST00000257430	NM_000038.5	1545	tCa/tAa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123176490	123176490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	81	212	1	ENST00000218089.9:c.457G>A	p.Asp153Asn	p.D153N	ENST00000218089	NM_001042749.1	153	Gat/Aat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151880126	151880126	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146495785		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	89	378	0	ENST00000262189.6:c.5198C>T	p.Ser1733Leu	p.S1733L	ENST00000262189	NM_170606.2	1733	tCg/tTg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28597612	28597612	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	91	346	1	ENST00000241453.7:c.2293G>T	p.Glu765Ter	p.E765*	ENST00000241453	NM_004119.2	765	Gaa/Taa																																																																															
KDR	3791	MSKCC	GRCh37	4	55963886	55963886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	106	413	0	ENST00000263923.4:c.2557G>A	p.Ala853Thr	p.A853T	ENST00000263923	NM_002253.2	853	Gcc/Acc																																																																															
ATRX	546	MSKCC	GRCh37	X	76953086	76953086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	89	396	0	ENST00000373344.5:c.227C>T	p.Ser76Leu	p.S76L	ENST00000373344	NM_000489.3	76	tCg/tTg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740444	58740444	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	81	503	0	ENST00000305921.3:c.1349T>G	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	450	tTa/tGa																																																																															
ATR	545	MSKCC	GRCh37	3	142279297	142279297	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	78	258	0	ENST00000350721.4:c.1350-1G>T		p.X450_splice	ENST00000350721	NM_001184.3	450																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31017155	31017155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	24	275	0	ENST00000375687.4:c.486G>T	p.Lys162Asn	p.K162N	ENST00000375687	NM_015338.5	162	aaG/aaT																																																																															
XIAP	331	MSKCC	GRCh37	X	123020096	123020096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	191	688	1	ENST00000355640.3:c.584G>A	p.Gly195Asp	p.G195D	ENST00000355640		195	gGt/gAt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752361	57752361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	85	295	0	ENST00000274289.3:c.1212G>T	p.Lys404Asn	p.K404N	ENST00000274289	NM_006622.3	404	aaG/aaT																																																																															
NSD1	64324	MSKCC	GRCh37	5	176719015	176719015	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1321310131		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	71	275	1	ENST00000439151.2:c.6319C>T	p.Arg2107Cys	p.R2107C	ENST00000439151	NM_022455.4	2107	Cgc/Tgc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523334	9523334	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	63	504	0	ENST00000353224.5:c.1903G>T	p.Glu635Ter	p.E635*	ENST00000353224	NM_177990.2	635	Gaa/Taa																																																																															
CASP8	841	MSKCC	GRCh37	2	202131364	202131364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	86	410	0	ENST00000358485.4:c.332G>T	p.Arg111Ile	p.R111I	ENST00000358485	NM_001080125.1	111	aGa/aTa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193104673	193104673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	82	300	0	ENST00000367435.3:c.377G>A	p.Arg126Gln	p.R126Q	ENST00000367435	NM_024529.4	126	cGa/cAa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25471054	25471054	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	58	870	1	ENST00000264709.3:c.707C>A	p.Ser236Tyr	p.S236Y	ENST00000264709	NM_175629.2	236	tCt/tAt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819291	3819291	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	146	488	0	ENST00000262367.5:c.2944G>T	p.Glu982Ter	p.E982*	ENST00000262367	NM_004380.2	982	Gaa/Taa																																																																															
ALK	238	MSKCC	GRCh37	2	29940449	29940449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	74	294	0	ENST00000389048.3:c.782G>A	p.Arg261Gln	p.R261Q	ENST00000389048	NM_004304.4	261	cGa/cAa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56832433	56832433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	62	383	0	ENST00000308159.5:c.343G>A	p.Glu115Lys	p.E115K	ENST00000308159	NM_014669.4	115	Gaa/Aaa																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739335	46739335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	87	499	0	ENST00000371975.4:c.1526G>A	p.Arg509Gln	p.R509Q	ENST00000371975	NM_003579.3	509	cGa/cAa																																																																															
SMO	6608	MSKCC	GRCh37	7	128852036	128852036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	68	929	0	ENST00000249373.3:c.2108G>A	p.Arg703Gln	p.R703Q	ENST00000249373	NM_005631.4	703	cGa/cAa																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911048	29911048	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	196	1142	2	ENST00000376809.5:c.347C>A	p.Ser116Tyr	p.S116Y	ENST00000376809	NM_002116.7	116	tCt/tAt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112152	115112152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	147	783	3	ENST00000257566.3:c.1588G>A	p.Ala530Thr	p.A530T	ENST00000257566	NM_016569.3	530	Gcc/Acc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112924292	112924292	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	44	686	0	ENST00000351677.2:c.1238G>T	p.Arg413Ile	p.R413I	ENST00000351677	NM_002834.3	413	aGa/aTa																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99808233	99808233	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	45	476	0	ENST00000280892.6:c.456G>T	p.Glu152Asp	p.E152D	ENST00000280892	NM_001130678.1	152	gaG/gaT																																																																															
BCOR	54880	MSKCC	GRCh37	X	39911648	39911648	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752359195		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	112	483	0	ENST00000378444.4:c.4982G>A	p.Arg1661Gln	p.R1661Q	ENST00000378444	NM_001123385.1	1661	cGa/cAa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960059	134960059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	134	628	0	ENST00000398015.3:c.2416G>A	p.Asp806Asn	p.D806N	ENST00000398015	NM_004441.4	806	Gac/Aac																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701940	43701940	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	31	124	0	ENST00000382044.4:c.5306-1G>T		p.X1769_splice	ENST00000382044	NM_001141980.1	1769																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8484375	8484375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	61	258	0	ENST00000356435.5:c.3157C>A	p.Leu1053Ile	p.L1053I	ENST00000356435		1053	Ctt/Att																																																																															
ATRX	546	MSKCC	GRCh37	X	76938149	76938149	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	142	544	0	ENST00000373344.5:c.2599A>C	p.Asn867His	p.N867H	ENST00000373344	NM_000489.3	867	Aat/Cat																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644588	21644588	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	122	404	0	ENST00000421138.2:c.79G>T	p.Glu27Ter	p.E27*	ENST00000421138		27	Gaa/Taa																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074259	8074259	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	97	455	0	ENST00000377482.5:c.400A>C	p.Lys134Gln	p.K134Q	ENST00000377482	NM_018948.3	134	Aaa/Caa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254836	16254836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	145	497	0	ENST00000375759.3:c.2101G>A	p.Glu701Lys	p.E701K	ENST00000375759	NM_015001.2	701	Gaa/Aaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255539	16255539	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	105	440	0	ENST00000375759.3:c.2804T>G	p.Val935Gly	p.V935G	ENST00000375759	NM_015001.2	935	gTt/gGt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256657	16256657	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	103	423	0	ENST00000375759.3:c.3922A>C	p.Lys1308Gln	p.K1308Q	ENST00000375759	NM_015001.2	1308	Aaa/Caa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097812	27097812	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	65	348	0	ENST00000324856.7:c.3401C>A	p.Ser1134Tyr	p.S1134Y	ENST00000324856	NM_006015.4	1134	tCt/tAt																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39311614	39311614	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	102	324	0	ENST00000373001.3:c.1045A>C	p.Lys349Gln	p.K349Q	ENST00000373001	NM_022157.3	349	Aaa/Caa																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72163771	72163771	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	93	491	0	ENST00000357731.5:c.587A>G	p.Asp196Gly	p.D196G	ENST00000357731	NM_173808.2	196	gAc/gGc																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117690341	117690341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	121	447	0	ENST00000369458.3:c.788C>A	p.Ser263Tyr	p.S263Y	ENST00000369458	NM_024626.3	263	tCt/tAt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849121	156849121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	151	821	1	ENST00000524377.1:c.2013G>T	p.Met671Ile	p.M671I	ENST00000524377	NM_002529.3	671	atG/atT																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176054974	176054974	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	137	498	0	ENST00000367669.3:c.1079T>G	p.Leu360Arg	p.L360R	ENST00000367669	NM_022457.5	360	cTt/cGt																																																																															
MDM4	4194	MSKCC	GRCh37	1	204513681	204513681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	65	214	1	ENST00000367182.3:c.691G>T	p.Val231Phe	p.V231F	ENST00000367182	NM_001278516.1	231	Gtt/Ttt																																																																															
TET1	80312	MSKCC	GRCh37	10	70333293	70333293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	163	616	1	ENST00000373644.4:c.1198G>A	p.Gly400Ser	p.G400S	ENST00000373644	NM_030625.2	400	Ggt/Agt																																																																															
TET1	80312	MSKCC	GRCh37	10	70333858	70333858	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	91	369	0	ENST00000373644.4:c.1763G>T	p.Arg588Ile	p.R588I	ENST00000373644	NM_030625.2	588	aGa/aTa																																																																															
TET1	80312	MSKCC	GRCh37	10	70405613	70405613	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	67	406	0	ENST00000373644.4:c.3127A>C	p.Asn1043His	p.N1043H	ENST00000373644	NM_030625.2	1043	Aat/Cat																																																																															
TET1	80312	MSKCC	GRCh37	10	70405743	70405743	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	79	424	1	ENST00000373644.4:c.3257C>A	p.Ser1086Ter	p.S1086*	ENST00000373644	NM_030625.2	1086	tCg/tAg																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112745388	112745388	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	24	327	0	ENST00000369452.4:c.706G>T	p.Glu236Ter	p.E236*	ENST00000369452	NM_007373.3	236	Gaa/Taa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123243247	123243247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	162	727	0	ENST00000358487.5:c.2266G>T	p.Asp756Tyr	p.D756Y	ENST00000358487	NM_000141.4	756	Gac/Tac																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14300952	14300952	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	106	326	0	ENST00000256196.4:c.546A>C	p.Glu182Asp	p.E182D	ENST00000256196		182	gaA/gaC																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205149	61205149	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	147	563	0	ENST00000301761.2:c.89C>A	p.Ser30Ter	p.S30*	ENST00000301761	NM_017841.2	30	tCa/tAa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189489	94189489	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	124	270	0	ENST00000323929.3:c.1516G>T	p.Glu506Ter	p.E506*	ENST00000323929	NM_005591.3	506	Gaa/Taa																																																																															
SESN3	143686	MSKCC	GRCh37	11	94918473	94918473	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	89	398	0	ENST00000536441.1:c.709C>A	p.Leu237Ile	p.L237I	ENST00000536441	NM_144665.3	237	Ctt/Att																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373947	118373947	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	88	285	0	ENST00000534358.1:c.7340A>C	p.Lys2447Thr	p.K2447T	ENST00000534358	NM_005933.3	2447	aAa/aCa																																																																															
CBL	867	MSKCC	GRCh37	11	119144672	119144672	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	126	418	0	ENST00000264033.4:c.685G>T	p.Asp229Tyr	p.D229Y	ENST00000264033	NM_005188.3	229	Gat/Tat																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125514453	125514453	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	87	311	0	ENST00000428830.2:c.1148A>C	p.Lys383Thr	p.K383T	ENST00000428830	NM_001114121.2	383	aAa/aCa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871034	12871034	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	105	435	1	ENST00000228872.4:c.261C>A	p.Phe87Leu	p.F87L	ENST00000228872	NM_004064.3	87	ttC/ttA																																																																															
RECQL	5965	MSKCC	GRCh37	12	21643189	21643189	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	155	524	1	ENST00000421138.2:c.338T>C	p.Met113Thr	p.M113T	ENST00000421138		113	aTg/aCg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233214	46233214	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	96	339	0	ENST00000334344.6:c.1433T>G	p.Leu478Ter	p.L478*	ENST00000334344	NM_152641.2	478	tTa/tGa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243524	46243524	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	64	286	0	ENST00000334344.6:c.1877C>A	p.Ser626Tyr	p.S626Y	ENST00000334344	NM_152641.2	626	tCt/tAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438734	49438734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	173	646	0	ENST00000301067.7:c.4756C>T	p.Arg1586Cys	p.R1586C	ENST00000301067	NM_003482.3	1586	Cgc/Tgc																																																																															
CDK4	1019	MSKCC	GRCh37	12	58142358	58142358	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	106	407	0	ENST00000257904.6:c.862C>T	p.Arg288Ter	p.R288*	ENST00000257904	NM_000075.3	288	Cga/Tga																																																																															
MSI1	4440	MSKCC	GRCh37	12	120789165	120789165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	40	512	0	ENST00000257552.2:c.772G>A	p.Val258Ile	p.V258I	ENST00000257552	NM_002442.3	258	Gtc/Atc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911551	32911551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	24	297	1	ENST00000380152.3:c.3059C>A	p.Ser1020Tyr	p.S1020Y	ENST00000380152		1020	tCt/tAt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103508433	103508433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	42	144	0	ENST00000355739.4:c.499G>A	p.Glu167Lys	p.E167K	ENST00000355739	NM_000123.3	167	Gaa/Aaa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103519130	103519130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	38	454	0	ENST00000355739.4:c.2468G>T	p.Arg823Ile	p.R823I	ENST00000355739	NM_000123.3	823	aGa/aTa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81534632	81534632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	77	372	0	ENST00000298171.2:c.277G>A	p.Glu93Lys	p.E93K	ENST00000298171	NM_000369.2	93	Gaa/Aaa																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643393	38643393	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	109	381	2	ENST00000299084.4:c.863A>C	p.Lys288Thr	p.K288T	ENST00000299084	NM_152594.2	288	aAa/aCa																																																																															
MGA	23269	MSKCC	GRCh37	15	42003367	42003367	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	146	455	0	ENST00000219905.7:c.2904T>G	p.Ile968Met	p.I968M	ENST00000219905	NM_001164273.1	968	atT/atG																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43720305	43720305	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	171	544	0	ENST00000382044.4:c.3737G>T	p.Arg1246Ile	p.R1246I	ENST00000382044	NM_001141980.1	1246	aGa/aTa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43738660	43738660	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	127	528	0	ENST00000382044.4:c.2965A>C	p.Lys989Gln	p.K989Q	ENST00000382044	NM_001141980.1	989	Aaa/Caa																																																																															
IDH2	3418	MSKCC	GRCh37	15	90630482	90630482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	151	507	0	ENST00000330062.3:c.829G>A	p.Asp277Asn	p.D277N	ENST00000330062	NM_002168.2	277	Gac/Aac																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396898	396898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	170	749	1	ENST00000262320.3:c.128G>A	p.Ser43Asn	p.S43N	ENST00000262320	NM_003502.3	43	aGt/aAt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778302	3778909	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTGCTGCTGCTGCATGGCCGGTGGGTAGCCTCCGGGTCCTTGAGGCTGCTGGAACTGGCCGTGCCCCGCCATGCCCCCAGCCATGCCGGCACTCCCTTGCTGCTGCTGCTGTTGCTGCTGTTGTTGCTGCTGCTGTTGCTGCTGCTGCTGCAGCAGCTGCCTCCGTAACATTTCTCGGTACTGTGGATTCATACTCGCCATGTTGGGGTTGTGTCCTGGGTTCATGATGTTCAAGGCCTGGCCCTGGGGGTTCAGGCCTCCCATCGCCTGCTGCTGTGGAGGCACACCGGGCCGCGGCACGCCAGCCTGCATGGCATTCAGGTTCTGCAGGCTGGGCTGCTGGTGCATGCCAGGCTGGGGTTGCATGCCGGGCTGGGACTGGAGGCCAGGCTGGGGCTGCATGCCGGGCTGATTGGCCACGTACTTGGCTGTGCGCTGTTTGATGAAAGCTGCCATTAGCTGCGGGTTTGATTTGAGAATGTTCAGCACCTGCTGTTGCTGCTGAGGGGAGCTGGGCGACTTCAGGGTCCGCAGCAGGTCTTGCAGAGCGCTGGGTGAGATGCTCCTGGGTGGCTGCACGCTGGGCATCCGGGGCCCAGCCACGGC	CGCTGCTGCTGCTGCATGGCCGGTGGGTAGCCTCCGGGTCCTTGAGGCTGCTGGAACTGGCCGTGCCCCGCCATGCCCCCAGCCATGCCGGCACTCCCTTGCTGCTGCTGCTGTTGCTGCTGTTGTTGCTGCTGCTGTTGCTGCTGCTGCTGCAGCAGCTGCCTCCGTAACATTTCTCGGTACTGTGGATTCATACTCGCCATGTTGGGGTTGTGTCCTGGGTTCATGATGTTCAAGGCCTGGCCCTGGGGGTTCAGGCCTCCCATCGCCTGCTGCTGTGGAGGCACACCGGGCCGCGGCACGCCAGCCTGCATGGCATTCAGGTTCTGCAGGCTGGGCTGCTGGTGCATGCCAGGCTGGGGTTGCATGCCGGGCTGGGACTGGAGGCCAGGCTGGGGCTGCATGCCGGGCTGATTGGCCACGTACTTGGCTGTGCGCTGTTTGATGAAAGCTGCCATTAGCTGCGGGTTTGATTTGAGAATGTTCAGCACCTGCTGTTGCTGCTGAGGGGAGCTGGGCGACTTCAGGGTCCGCAGCAGGTCTTGCAGAGCGCTGGGTGAGATGCTCCTGGGTGGCTGCACGCTGGGCATCCGGGGCCCAGCCACGGC	-			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	39	919	0	ENST00000262367.5:c.6139_6746del	p.Ala2047HisfsTer91	p.A2047Hfs*91	ENST00000262367	NM_004380.2	2047	GCCGTGGCTGGGCCCCGGATGCCCAGCGTGCAGCCACCCAGGAGCATCTCACCCAGCGCTCTGCAAGACCTGCTGCGGACCCTGAAGTCGCCCAGCTCCCCTCAGCAGCAACAGCAGGTGCTGAACATTCTCAAATCAAACCCGCAGCTAATGGCAGCTTTCATCAAACAGCGCACAGCCAAGTACGTGGCCAATCAGCCCGGCATGCAGCCCCAGCCTGGCCTCCAGTCCCAGCCCGGCATGCAACCCCAGCCTGGCATGCACCAGCAGCCCAGCCTGCAGAACCTGAATGCCATGCAGGCTGGCGTGCCGCGGCCCGGTGTGCCTCCACAGCAGCAGGCGATGGGAGGCCTGAACCCCCAGGGCCAGGCCTTGAACATCATGAACCCAGGACACAACCCCAACATGGCGAGTATGAATCCACAGTACCGAGAAATGTTACGGAGGCAGCTGCTGCAGCAGCAGCAGCAACAGCAGCAGCAACAACAGCAGCAACAGCAGCAGCAGCAAGGGAGTGCCGGCATGGCTGGGGGCATGGCGGGGCACGGCCAGTTCCAGCAGCCTCAAGGACCCGGAGGCTACCCACCGGCCATGCAGCAGCAGCAGCGc/c																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029165	14029165	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201179693		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	63	224	0	ENST00000311895.7:c.1376C>A	p.Ser459Ter	p.S459*	ENST00000311895	NM_005236.2	459	tCa/tAa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813676	50813676	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	163	647	0	ENST00000398568.2:c.1230G>T	p.Glu410Asp	p.E410D	ENST00000398568	NM_001042412.1	410	gaG/gaT																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645247	67645247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	155	545	0	ENST00000264010.4:c.512C>T	p.Ala171Val	p.A171V	ENST00000264010	NM_006565.3	171	gCc/gTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845920	72845920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	115	411	0	ENST00000268489.5:c.3547G>A	p.Glu1183Lys	p.E1183K	ENST00000268489	NM_006885.3	1183	Gag/Aag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81925192	81925192	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	87	412	0	ENST00000359376.3:c.983A>C	p.Asn328Thr	p.N328T	ENST00000359376	NM_002661.3	328	aAc/aCc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348898	89348898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	193	776	0	ENST00000301030.4:c.4052G>A	p.Arg1351Lys	p.R1351K	ENST00000301030	NM_001256183.1	1351	aGa/aAa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89877208	89877208	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	38	368	0	ENST00000389301.3:c.429G>T	p.Lys143Asn	p.K143N	ENST00000389301	NM_000135.2	143	aaG/aaT																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968319	15968319	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	69	236	0	ENST00000268712.3:c.4966A>G	p.Thr1656Ala	p.T1656A	ENST00000268712	NM_006311.3	1656	Acc/Gcc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618341	37618341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	67	376	0	ENST00000447079.4:c.17G>T	p.Arg6Ile	p.R6I	ENST00000447079	NM_015083.1	6	aGa/aTa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37672043	37672043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	134	426	0	ENST00000447079.4:c.2828C>T	p.Ala943Val	p.A943V	ENST00000447079	NM_015083.1	943	gCt/gTt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37681036	37681036	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	119	474	0	ENST00000447079.4:c.3205G>T	p.Glu1069Ter	p.E1069*	ENST00000447079	NM_015083.1	1069	Gaa/Taa																																																																															
STAT3	6774	MSKCC	GRCh37	17	40476739	40476739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	151	519	0	ENST00000264657.5:c.1590G>T	p.Glu530Asp	p.E530D	ENST00000264657	NM_139276.2	530	gaG/gaT																																																																															
EZH1	2145	MSKCC	GRCh37	17	40872368	40872368	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	173	659	0	ENST00000428826.2:c.587A>G	p.Asp196Gly	p.D196G	ENST00000428826		196	gAc/gGc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59770859	59770859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	85	271	0	ENST00000259008.2:c.2507G>T	p.Arg836Ile	p.R836I	ENST00000259008	NM_032043.2	836	aGa/aTa																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66521910	66521910	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	67	301	1	ENST00000358598.2:c.565G>T	p.Glu189Ter	p.E189*	ENST00000358598	NM_212471.2	189	Gaa/Taa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39595519	39595519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	18	231	0	ENST00000262039.4:c.1405G>A	p.Glu469Lys	p.E469K	ENST00000262039	NM_002647.2	469	Gaa/Aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604755	48604755	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	117	398	0	ENST00000342988.3:c.1577A>T	p.Glu526Val	p.E526V	ENST00000342988	NM_005359.5	526	gAa/gTa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56390314	56390314	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	59	231	1	ENST00000348428.3:c.1053G>T	p.Met351Ile	p.M351I	ENST00000348428	NM_006785.3	351	atG/atT																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5219336	5219336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	153	728	0	ENST00000357368.4:c.3908T>C	p.Ile1303Thr	p.I1303T	ENST00000357368	NM_002850.3	1303	aTc/aCc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5260819	5260819	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	127	677	1	ENST00000357368.4:c.592C>T	p.Arg198Ter	p.R198*	ENST00000357368	NM_002850.3	198	Cga/Tga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302370	15302370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	220	996	0	ENST00000263388.2:c.901G>A	p.Val301Met	p.V301M	ENST00000263388	NM_000435.2	301	Gtg/Atg																																																																															
AXL	558	MSKCC	GRCh37	19	41744394	41744394	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	164	818	0	ENST00000301178.4:c.1014G>T	p.Glu338Asp	p.E338D	ENST00000301178	NM_021913.4	338	gaG/gaT																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46597047	46597047	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	41	506	0	ENST00000263734.3:c.861G>T	p.Glu287Asp	p.E287D	ENST00000263734	NM_001430.4	287	gaG/gaT																																																																															
MSH2	4436	MSKCC	GRCh37	2	47693916	47693916	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	82	282	0	ENST00000233146.2:c.1630A>C	p.Ile544Leu	p.I544L	ENST00000233146	NM_000251.2	544	Atc/Ctc																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873082	136873082	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	99	461	0	ENST00000241393.3:c.416T>C	p.Val139Ala	p.V139A	ENST00000241393	NM_003467.2	139	gTc/gCc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198263244	198263244	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	83	355	0	ENST00000335508.6:c.3075G>T	p.Lys1025Asn	p.K1025N	ENST00000335508	NM_012433.2	1025	aaG/aaT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248708	212248708	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144842611		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	67	353	0	ENST00000342788.4:c.3559G>A	p.Glu1187Lys	p.E1187K	ENST00000342788	NM_005235.2	1187	Gaa/Aaa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212578311	212578311	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	80	412	1	ENST00000342788.4:c.946G>T	p.Glu316Ter	p.E316*	ENST00000342788	NM_005235.2	316	Gaa/Taa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520188	9520188	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	77	447	0	ENST00000353224.5:c.2081T>A	p.Leu694His	p.L694H	ENST00000353224	NM_177990.2	694	cTc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770580	40770580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	30	419	0	ENST00000373198.4:c.2802G>T	p.Lys934Asn	p.K934N	ENST00000373198	NM_133170.3	934	aaG/aaT																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626703	12626703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	121	490	0	ENST00000251849.4:c.1586C>T	p.Ser529Leu	p.S529L	ENST00000251849	NM_002880.3	529	tCg/tTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47084172	47084172	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	86	332	0	ENST00000409792.3:c.7117A>G	p.Asn2373Asp	p.N2373D	ENST00000409792	NM_014159.6	2373	Aat/Gat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163605	47163605	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	34	288	0	ENST00000409792.3:c.2521T>G	p.Leu841Val	p.L841V	ENST00000409792	NM_014159.6	841	Ttg/Gtg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026810	71026810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	43	178	0	ENST00000318789.4:c.1412C>T	p.Ala471Val	p.A471V	ENST00000318789	NM_032682.5	471	gCa/gTa																																																																															
ATR	545	MSKCC	GRCh37	3	142212068	142212068	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	135	421	0	ENST00000350721.4:c.5984A>C	p.Asn1995Thr	p.N1995T	ENST00000350721	NM_001184.3	1995	aAc/aCc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133463	55133463	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	82	370	0	ENST00000257290.5:c.767A>C	p.Lys256Thr	p.K256T	ENST00000257290	NM_006206.4	256	aAa/aCa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133609	55133609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	94	434	0	ENST00000257290.5:c.913G>A	p.Val305Ile	p.V305I	ENST00000257290	NM_006206.4	305	Gtc/Atc																																																																															
KDR	3791	MSKCC	GRCh37	4	55955584	55955584	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	123	474	0	ENST00000263923.4:c.3361G>T	p.Glu1121Ter	p.E1121*	ENST00000263923	NM_002253.2	1121	Gaa/Taa																																																																															
TET2	54790	MSKCC	GRCh37	4	106180899	106180899	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	20	310	0	ENST00000380013.4:c.3927T>G	p.Phe1309Leu	p.F1309L	ENST00000380013	NM_001127208.2	1309	ttT/ttG																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521256	187521256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	152	631	0	ENST00000441802.2:c.11899C>T	p.Pro3967Ser	p.P3967S	ENST00000441802	NM_005245.3	3967	Cct/Tct																																																																															
TERT	7015	MSKCC	GRCh37	5	1293721	1293721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	188	1041	1	ENST00000310581.5:c.1280C>T	p.Ala427Val	p.A427V	ENST00000310581	NM_198253.2	427	gCc/gTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177679	56177679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	74	334	1	ENST00000399503.3:c.2652C>A	p.Phe884Leu	p.F884L	ENST00000399503	NM_005921.1	884	ttC/ttA																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591276	67591276	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	98	313	0	ENST00000274335.5:c.1774A>C	p.Lys592Gln	p.K592Q	ENST00000274335		592	Aag/Cag																																																																															
MSH3	4437	MSKCC	GRCh37	5	80064706	80064706	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	105	311	0	ENST00000265081.6:c.2137A>C	p.Lys713Gln	p.K713Q	ENST00000265081	NM_002439.4	713	Aaa/Caa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685247	86685247	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	79	260	0	ENST00000274376.6:c.2963G>T	p.Arg988Ile	p.R988I	ENST00000274376	NM_002890.2	988	aGa/aTa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131925413	131925413	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	67	179	0	ENST00000265335.6:c.1336A>C	p.Lys446Gln	p.K446Q	ENST00000265335		446	Aaa/Caa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523065	176523065	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	139	734	0	ENST00000292408.4:c.1829A>G	p.His610Arg	p.H610R	ENST00000292408	NM_213647.1	610	cAc/cGc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562704	176562704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	103	546	0	ENST00000439151.2:c.600G>T	p.Glu200Asp	p.E200D	ENST00000439151	NM_022455.4	200	gaG/gaT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056376	180056376	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	131	835	0	ENST00000261937.6:c.868G>C	p.Glu290Gln	p.E290Q	ENST00000261937	NM_182925.4	290	Gaa/Caa																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816553	32816553	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	153	792	0	ENST00000354258.4:c.1622A>G	p.Tyr541Cys	p.Y541C	ENST00000354258	NM_000593.5	541	tAc/tGc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120630	94120630	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	75	378	0	ENST00000369303.4:c.421A>C	p.Asn141His	p.N141H	ENST00000369303	NM_004440.3	141	Aac/Cac																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120878	94120878	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	75	341	0	ENST00000369303.4:c.173T>G	p.Ile58Ser	p.I58S	ENST00000369303	NM_004440.3	58	aTt/aGt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117650561	117650561	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	110	443	0	ENST00000368508.3:c.5297A>C	p.Lys1766Thr	p.K1766T	ENST00000368508	NM_002944.2	1766	aAa/aCa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117718144	117718144	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	133	446	0	ENST00000368508.3:c.713A>C	p.Lys238Thr	p.K238T	ENST00000368508	NM_002944.2	238	aAa/aCa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001211	150001211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	103	477	0	ENST00000253339.5:c.2393G>A	p.Gly798Asp	p.G798D	ENST00000253339		798	gGc/gAc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162622195	162622195	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	96	419	0	ENST00000366898.1:c.502A>G	p.Thr168Ala	p.T168A	ENST00000366898	NM_004562.2	168	Acc/Gcc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268891	55268891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	149	685	0	ENST00000275493.2:c.2957G>T	p.Arg986Ile	p.R986I	ENST00000275493	NM_005228.3	986	aGa/aTa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509510	106509510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	117	530	0	ENST00000359195.3:c.1504C>T	p.Leu502Phe	p.L502F	ENST00000359195	NM_002649.2	502	Ctc/Ttc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509810	106509810	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	120	580	1	ENST00000359195.3:c.1804G>T	p.Glu602Ter	p.E602*	ENST00000359195	NM_002649.2	602	Gaa/Taa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106519967	106519967	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	35	182	1	ENST00000359195.3:c.2395G>T	p.Glu799Ter	p.E799*	ENST00000359195	NM_002649.2	799	Gaa/Taa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106519993	106519993	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	41	217	0	ENST00000359195.3:c.2421G>T	p.Lys807Asn	p.K807N	ENST00000359195	NM_002649.2	807	aaG/aaT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545706	106545706	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	136	463	0	ENST00000359195.3:c.3183G>T	p.Glu1061Asp	p.E1061D	ENST00000359195	NM_002649.2	1061	gaG/gaT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860073	151860073	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	89	318	0	ENST00000262189.6:c.10589C>A	p.Ser3530Tyr	p.S3530Y	ENST00000262189	NM_170606.2	3530	tCt/tAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151960154	151960154	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	111	359	0	ENST00000262189.6:c.1246T>G	p.Phe416Val	p.F416V	ENST00000262189	NM_170606.2	416	Ttt/Gtt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133164	38133164	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	116	408	0	ENST00000317025.8:c.4309G>T	p.Glu1437Ter	p.E1437*	ENST00000317025	NM_023034.1	1437	Gaa/Taa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205105	38205105	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	169	503	0	ENST00000317025.8:c.585A>C	p.Glu195Asp	p.E195D	ENST00000317025	NM_023034.1	195	gaA/gaC																																																																															
PREX2	80243	MSKCC	GRCh37	8	68972919	68972919	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	78	355	0	ENST00000288368.4:c.1244T>G	p.Phe415Cys	p.F415C	ENST00000288368	NM_024870.2	415	tTt/tGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8375954	8375954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	23	297	0	ENST00000356435.5:c.4643C>T	p.Pro1548Leu	p.P1548L	ENST00000356435		1548	cCg/cTg																																																																															
TEK	7010	MSKCC	GRCh37	9	27158028	27158028	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	121	607	0	ENST00000380036.4:c.252A>C	p.Lys84Asn	p.K84N	ENST00000380036	NM_000459.3	84	aaA/aaC																																																																															
TEK	7010	MSKCC	GRCh37	9	27197366	27197366	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	125	539	0	ENST00000380036.4:c.1678A>C	p.Asn560His	p.N560H	ENST00000380036	NM_000459.3	560	Aat/Cat																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966709	36966709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	88	421	0	ENST00000358127.4:c.617C>T	p.Ser206Phe	p.S206F	ENST00000358127	NM_001280556.1	206	tCt/tTt																																																																															
FANCC	2176	MSKCC	GRCh37	9	97897632	97897632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	101	326	0	ENST00000289081.3:c.839C>T	p.Ser280Leu	p.S280L	ENST00000289081	NM_000136.2	280	tCg/tTg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248047	110248047	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	37	407	0	ENST00000374672.4:c.1425G>T	p.Met475Ile	p.M475I	ENST00000374672	NM_004235.4	475	atG/atT																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250023	110250023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	46	819	1	ENST00000374672.4:c.652C>T	p.Pro218Ser	p.P218S	ENST00000374672	NM_004235.4	218	Ccg/Tcg																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127933424	127933424	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	129	487	0	ENST00000373547.4:c.111A>C	p.Glu37Asp	p.E37D	ENST00000373547	NM_002721.4	37	gaA/gaC																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222803	53222803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	176	853	0	ENST00000375401.3:c.4133C>T	p.Ser1378Phe	p.S1378F	ENST00000375401	NM_004187.3	1378	tCc/tTc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53225220	53225220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	150	604	0	ENST00000375401.3:c.2998G>A	p.Ala1000Thr	p.A1000T	ENST00000375401	NM_004187.3	1000	Gcc/Acc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53243918	53243918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	181	832	0	ENST00000375401.3:c.1075C>T	p.Pro359Ser	p.P359S	ENST00000375401	NM_004187.3	359	Cct/Tct																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410735	63410735	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	127	617	0	ENST00000330258.3:c.2432T>C	p.Ile811Thr	p.I811T	ENST00000330258	NM_152424.3	811	aTc/aCc																																																																															
MED12	9968	MSKCC	GRCh37	X	70345318	70345318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	50	680	0	ENST00000374080.3:c.2344C>A	p.Leu782Met	p.L782M	ENST00000374080		782	Ctg/Atg																																																																															
ATRX	546	MSKCC	GRCh37	X	76890140	76890140	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	81	470	0	ENST00000373344.5:c.4754C>A	p.Ser1585Tyr	p.S1585Y	ENST00000373344	NM_000489.3	1585	tCt/tAt																																																																															
XIAP	331	MSKCC	GRCh37	X	123034418	123034418	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	32	292	0	ENST00000355640.3:c.1175T>G	p.Ile392Arg	p.I392R	ENST00000355640		392	aTa/aGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0050418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	23	619	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922685	44922685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	21	316	0	ENST00000377967.4:c.1546G>T	p.Ala516Ser	p.A516S	ENST00000377967	NM_021140.2	516	Gca/Tca																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0050437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	131	378	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	216	687	0	ENST00000347630.2:c.397T>A	p.Phe133Ile	p.F133I	ENST00000347630	NM_001007230.1	133	Ttc/Atc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	125	340	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0050516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	133	315	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0050516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	107	267	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
STAT3	6774	MSKCC	GRCh37	17	40468838	40468839	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCACCATTA			P-0050516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	153	407	0	ENST00000264657.5:c.2217_2225dup	p.Gly741_Glu742insAspAsnGly	p.G741_E742insDNG	ENST00000264657	NM_139276.2	742	gaa/gaTAATGGTGAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218392	36218392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	279	751	1	ENST00000222270.7:c.4171G>A	p.Gly1391Arg	p.G1391R	ENST00000222270	NM_014727.1	1391	Gga/Aga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251643	212251643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	109	408	1	ENST00000342788.4:c.3416G>A	p.Arg1139Gln	p.R1139Q	ENST00000342788	NM_005235.2	1139	cGg/cAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541661	187541661	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	60	297	0	ENST00000441802.2:c.6079C>A	p.Arg2027Ser	p.R2027S	ENST00000441802	NM_005245.3	2027	Cgc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175647	112175647	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	98	289	0	ENST00000257430.4:c.4356del	p.Pro1453LeufsTer20	p.P1453Lfs*20	ENST00000257430	NM_000038.5	1452	gtA/gt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013691	12013691	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0050567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	145	449	0	ENST00000353533.5:c.634-1G>C		p.X212_splice	ENST00000353533	NM_003010.3	212																																																																																
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0050567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	98	293	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735470	40735470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	309	727	0	ENST00000373198.4:c.3403G>A	p.Val1135Met	p.V1135M	ENST00000373198	NM_133170.3	1135	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0050567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	198	560	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0050567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	141	459	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101574	27101574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	289	780	1	ENST00000324856.7:c.4856C>T	p.Pro1619Leu	p.P1619L	ENST00000324856	NM_006015.4	1619	cCa/cTa																																																																															
ATM	472	MSKCC	GRCh37	11	108154991	108154991	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	171	491	0	ENST00000278616.4:c.3784del	p.Arg1262GlufsTer7	p.R1262Efs*7	ENST00000278616	NM_000051.3	1262	Aga/ga																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70970928	70970928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	214	749	0	ENST00000276594.2:c.1333G>A	p.Asp445Asn	p.D445N	ENST00000276594	NM_024504.3	445	Gac/Aac																																																																															
JUN	3725	MSKCC	GRCh37	1	59247967	59247967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			509	233	592	3	ENST00000371222.2:c.776G>A	p.Arg259His	p.R259H	ENST00000371222	NM_002228.3	259	cGc/cAc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306942	65306942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			354	121	345	0	ENST00000342505.4:c.2635C>T	p.Arg879Cys	p.R879C	ENST00000342505	NM_002227.2	879	Cgt/Tgt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175958589	175958589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	117	336	0	ENST00000367669.3:c.1756C>T	p.Arg586Cys	p.R586C	ENST00000367669	NM_022457.5	586	Cgt/Tgt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63829525	63829525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	153	325	1	ENST00000279873.7:c.1168G>A	p.Ala390Thr	p.A390T	ENST00000279873	NM_032199.2	390	Gct/Act																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205266	61205266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	172	482	0	ENST00000301761.2:c.206G>A	p.Arg69His	p.R69H	ENST00000301761	NM_017841.2	69	cGc/cAc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885939	111885939	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			486	156	530	0	ENST00000341259.2:c.1566del	p.Glu523SerfsTer25	p.E523Sfs*25	ENST00000341259	NM_005475.2	521	Ccc/cc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701236	43701236	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			468	192	480	0	ENST00000382044.4:c.5459A>G	p.Tyr1820Cys	p.Y1820C	ENST00000382044	NM_001141980.1	1820	tAc/tGc																																																																															
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			214	188	506	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90645619	90645619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			158	103	255	0	ENST00000330062.3:c.4G>A	p.Ala2Thr	p.A2T	ENST00000330062	NM_002168.2	2	Gcc/Acc																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2096285	2096285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			512	276	704	0	ENST00000219066.1:c.222G>T	p.Glu74Asp	p.E74D	ENST00000219066	NM_002528.5	74	gaG/gaT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762108866		P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			288	111	418	3	ENST00000268489.5:c.10215dup	p.Gly3406ArgfsTer25	p.G3406Rfs*25	ENST00000268489	NM_006885.3	3405	-/C																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822741	72822741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			377	142	436	0	ENST00000268489.5:c.9434C>T	p.Thr3145Met	p.T3145M	ENST00000268489	NM_006885.3	3145	aCg/aTg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			402	107	547	7	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			456	196	661	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440750	56440750	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			372	160	512	0	ENST00000407977.2:c.468del	p.Leu157Ter	p.L157*	ENST00000407977		156	ggG/gg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			818	46	782	4	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256768	19256769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1202792889		P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			548	115	648	1	ENST00000162023.5:c.944dup	p.Val316SerfsTer6	p.V316Sfs*6	ENST00000162023		315	cca/ccCa																																																																															
CIC	23152	MSKCC	GRCh37	19	42795060	42795060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			627	252	751	0	ENST00000575354.2:c.2140G>A	p.Gly714Arg	p.G714R	ENST00000575354	NM_015125.3	714	Ggg/Agg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			535	200	739	6	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40727155	40727155	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			425	151	594	0	ENST00000373198.4:c.3809A>G	p.His1270Arg	p.H1270R	ENST00000373198	NM_133170.3	1270	cAc/cGc																																																																															
EP300	2033	MSKCC	GRCh37	22	41573820	41573820	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			532	252	710	0	ENST00000263253.7:c.6105G>T	p.Gln2035His	p.Q2035H	ENST00000263253	NM_001429.3	2035	caG/caT																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713609	30713609	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	30	511	0	ENST00000359013.4:c.1009G>T	p.Glu337Ter	p.E337*	ENST00000359013	NM_001024847.2	337	Gag/Tag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41268762	41268762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	161	377	2	ENST00000349496.5:c.1000G>A	p.Glu334Lys	p.E334K	ENST00000349496	NM_001904.3	334	Gaa/Aaa																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936518	49936518	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	251	667	0	ENST00000296474.3:c.1409del	p.Arg470LeufsTer11	p.R470Lfs*11	ENST00000296474	NM_002447.2	470	cGt/ct																																																																															
MITF	4286	MSKCC	GRCh37	3	69928518	69928518	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			462	156	573	0	ENST00000352241.4:c.338C>A	p.Pro113Gln	p.P113Q	ENST00000352241	NM_198159.2	113	cCg/cAg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027015	71027015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	177	468	2	ENST00000318789.4:c.1312C>T	p.Arg438Trp	p.R438W	ENST00000318789	NM_032682.5	438	Cgg/Tgg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665122	138665122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	186	437	1	ENST00000330315.3:c.443G>A	p.Arg148His	p.R148H	ENST00000330315	NM_023067.3	148	cGc/cAc																																																																															
ATR	545	MSKCC	GRCh37	3	142261555	142261555	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			362	127	320	0	ENST00000350721.4:c.3402del	p.Phe1134LeufsTer6	p.F1134Lfs*6	ENST00000350721	NM_001184.3	1134	ttT/tt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			458	20	359	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1805552	1805552	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			422	158	583	0	ENST00000260795.2:c.1064T>C	p.Val355Ala	p.V355A	ENST00000260795		355	gTg/gCg																																																																															
TERT	7015	MSKCC	GRCh37	5	1280428	1280428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	198	594	3	ENST00000310581.5:c.1795C>T	p.Arg599Trp	p.R599W	ENST00000310581	NM_198253.2	599	Cgg/Tgg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31464432	31464432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			521	194	537	0	ENST00000344624.3:c.2485C>T	p.Arg829Trp	p.R829W	ENST00000344624		829	Cgg/Tgg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526755	31526755	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			443	40	454	2	ENST00000344624.3:c.285del	p.Cys96AlafsTer12	p.C96Afs*12	ENST00000344624		95	ccC/cc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56174824	56174824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	145	351	0	ENST00000399503.3:c.1983G>A	p.Met661Ile	p.M661I	ENST00000399503	NM_005921.1	661	atG/atA																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177763	56177763	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			276	107	327	0	ENST00000399503.3:c.2739del	p.Gly914AspfsTer7	p.G914Dfs*7	ENST00000399503	NM_005921.1	912	ggA/gg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	333	474	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86629108	86629108	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	112	249	0	ENST00000274376.6:c.853C>T	p.Arg285Ter	p.R285*	ENST00000274376	NM_002890.2	285	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112179494	112179494	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			263	143	292	0	ENST00000257430.4:c.8203G>T	p.Gly2735Ter	p.G2735*	ENST00000257430	NM_000038.5	2735	Gga/Tga																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367244	50367244	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			236	115	345	0	ENST00000331340.3:c.56del	p.Pro19LeufsTer2	p.P19Lfs*2	ENST00000331340	NM_006060.4	17	agC/ag																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194671	29194671	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370779406		P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			524	236	705	1	ENST00000240100.2:c.1057C>T	p.Arg353Trp	p.R353W	ENST00000240100	NM_001394.6	353	Cgg/Tgg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564755	139564755	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			659	112	737	1	ENST00000308874.7:c.549del	p.Arg184GlyfsTer13	p.R184Gfs*13	ENST00000308874		182	Ccc/cc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44732942	44732942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	153	469	0	ENST00000377967.4:c.145C>T	p.Leu49Phe	p.L49F	ENST00000377967	NM_021140.2	49	Ctc/Ttc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228160	53228160	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0050574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	165	550	0	ENST00000375401.3:c.2242C>T	p.Arg748Trp	p.R748W	ENST00000375401	NM_004187.3	748	Cgg/Tgg																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	109	359	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	46	335	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	56	302	1	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	76	732	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TERT	7015	MSKCC	GRCh37	5	1294665	1294665	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	73	392	4	ENST00000310581.5:c.336del	p.Glu113ArgfsTer15	p.E113Rfs*15	ENST00000310581	NM_198253.2	112	ccC/cc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504401	8504401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757922864		P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	74	424	0	ENST00000356435.5:c.1682G>A	p.Arg561Gln	p.R561Q	ENST00000356435		561	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	17	222	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	50	272	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070349	37070349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1220422495		P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	37	423	0	ENST00000231790.2:c.1489del	p.Arg497GlyfsTer11	p.R497Gfs*11	ENST00000231790	NM_000249.3	495	aCc/ac																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	152	526	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	23	187	0	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156834552	156834552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	84	728	1	ENST00000524377.1:c.320C>T	p.Ala107Val	p.A107V	ENST00000524377	NM_002529.3	107	gCg/gTg																																																																															
MET	4233	MSKCC	GRCh37	7	116395560	116395560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	96	373	0	ENST00000397752.3:c.1853C>T	p.Thr618Met	p.T618M	ENST00000397752	NM_000245.2	618	aCg/aTg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	87	562	1	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	108	545	2	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	59	480	0	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	97	595	4	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411530	63411530	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	80	728	0	ENST00000330258.3:c.1637del	p.Leu546CysfsTer16	p.L546Cfs*16	ENST00000330258	NM_152424.3	546	tTg/tg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390736	139390736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	162	907	1	ENST00000277541.6:c.7455del	p.Ser2486ArgfsTer103	p.S2486Rfs*103	ENST00000277541	NM_017617.3	2485	ccC/cc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619428	1619428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	192	712	0	ENST00000344749.5:c.1213C>T	p.Arg405Cys	p.R405C	ENST00000344749	NM_001136139.2	405	Cgc/Tgc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252940	36252940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	114	382	0	ENST00000300305.3:c.422C>T	p.Ser141Leu	p.S141L	ENST00000300305		141	tCg/tTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916957	178916957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	46	300	0	ENST00000263967.3:c.344G>A	p.Arg115Gln	p.R115Q	ENST00000263967	NM_006218.2	115	cGa/cAa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622192	1622193	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	185	791	0	ENST00000344749.5:c.682_683del	p.Trp228GlufsTer25	p.W228Efs*25	ENST00000344749	NM_001136139.2	228	TGg/g																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562259	21562259	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148138215		P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	115	816	0	ENST00000382592.4:c.1660G>A	p.Gly554Ser	p.G554S	ENST00000382592	NM_014572.2	554	Ggc/Agc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	27	873	0	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	134	702	0	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223858	36223858	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	106	851	3	ENST00000222270.7:c.6413del	p.Pro2138ArgfsTer15	p.P2138Rfs*15	ENST00000222270	NM_014727.1	2136	ctC/ct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720648	89720649	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TA	TA	-			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	19	404	0	ENST00000371953.3:c.802-3_802-2del		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3778282	3778282	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	84	715	1	ENST00000262367.5:c.6766del	p.Leu2256SerfsTer46	p.L2256Sfs*46	ENST00000262367	NM_004380.2	2256	Ctc/tc																																																																															
RET	5979	MSKCC	GRCh37	10	43610164	43610164	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137855422		P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	55	752	3	ENST00000355710.3:c.2116G>A	p.Val706Met	p.V706M	ENST00000355710	NM_020975.4	706	Gtg/Atg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31429602	31429602	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370990538		P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	33	362	0	ENST00000344624.3:c.3196C>T	p.Arg1066Cys	p.R1066C	ENST00000344624		1066	Cgc/Tgc																																																																															
KDR	3791	MSKCC	GRCh37	4	55974007	55974007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	81	515	0	ENST00000263923.4:c.1309T>C	p.Tyr437His	p.Y437H	ENST00000263923	NM_002253.2	437	Tac/Cac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438650	49438650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	148	665	0	ENST00000301067.7:c.4840C>T	p.Arg1614Trp	p.R1614W	ENST00000301067	NM_003482.3	1614	Cgg/Tgg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291546	15291546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	87	734	1	ENST00000263388.2:c.3088G>A	p.Gly1030Arg	p.G1030R	ENST00000263388	NM_000435.2	1030	Gga/Aga																																																																															
AR	367	MSKCC	GRCh37	X	66765446	66765446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	47	672	0	ENST00000374690.3:c.458C>T	p.Pro153Leu	p.P153L	ENST00000374690	NM_000044.3	153	cCg/cTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048797	180048797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	102	856	0	ENST00000261937.6:c.1765C>T	p.Arg589Cys	p.R589C	ENST00000261937	NM_182925.4	589	Cgc/Tgc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931700	39931700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	78	604	0	ENST00000378444.4:c.2899G>A	p.Ala967Thr	p.A967T	ENST00000378444	NM_001123385.1	967	Gcc/Acc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11018786	11018786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	177	776	1	ENST00000327064.4:c.418C>T	p.Arg140Trp	p.R140W	ENST00000327064	NM_199141.1	140	Cgg/Tgg																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62324156	62324158	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGG	AGG	-			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	108	510	0	ENST00000508582.2:c.2728_2730del		p.X910_splice	ENST00000508582		910																																																																																
IDH2	3418	MSKCC	GRCh37	15	90631962	90631964	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	47	511	1	ENST00000330062.3:c.389_391del	p.Lys130del	p.K130del	ENST00000330062	NM_002168.2	130	aAGAtg/atg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2977548	2977548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751008087		P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	54	544	0	ENST00000396946.4:c.1136G>A	p.Arg379Gln	p.R379Q	ENST00000396946	NM_032415.4	379	cGg/cAg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120506308	120506308	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140311741		P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	64	421	1	ENST00000256646.2:c.1804G>A	p.Ala602Thr	p.A602T	ENST00000256646	NM_024408.3	602	Gcc/Acc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176104164	176104164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	62	320	0	ENST00000367669.3:c.950C>T	p.Ala317Val	p.A317V	ENST00000367669	NM_022457.5	317	gCt/gTt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742826	17742826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	92	752	2	ENST00000250003.3:c.734C>T	p.Ala245Val	p.A245V	ENST00000250003	NM_002478.4	245	gCg/gTg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94211931	94211932	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	31	449	0	ENST00000323929.3:c.513dup	p.Gly172ArgfsTer16	p.G172Rfs*16	ENST00000323929	NM_005591.3	171	-/A																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001889	29001889	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	57	356	0	ENST00000282397.4:c.1276G>A	p.Val426Met	p.V426M	ENST00000282397	NM_002019.4	426	Gtg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830904	72830904	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	62	564	1	ENST00000268489.5:c.5677A>G	p.Arg1893Gly	p.R1893G	ENST00000268489	NM_006885.3	1893	Agg/Ggg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984847	72984847	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	80	519	0	ENST00000268489.5:c.2737del	p.Leu913Ter	p.L913*	ENST00000268489	NM_006885.3	913	Cta/ta																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348824	89348825	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	242	868	1	ENST00000301030.4:c.4125_4126del	p.Lys1376GlyfsTer9	p.K1376Gfs*9	ENST00000301030	NM_001256183.1	1375	gaGAag/gaag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145753	11145753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	156	753	3	ENST00000344626.4:c.4115G>A	p.Arg1372His	p.R1372H	ENST00000344626	NM_003072.3	1372	cGc/cAc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367975	15367975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	105	641	0	ENST00000263377.2:c.1351G>A	p.Glu451Lys	p.E451K	ENST00000263377	NM_058243.2	451	Gaa/Aaa																																																																															
CIC	23152	MSKCC	GRCh37	19	42791338	42791339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1384930527		P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	118	748	1	ENST00000575354.2:c.404dup	p.Gly136ArgfsTer8	p.G136Rfs*8	ENST00000575354	NM_015125.3	133	ggc/ggCc																																																																															
BARD1	580	MSKCC	GRCh37	2	215593536	215593536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	59	334	0	ENST00000260947.4:c.2198G>A	p.Cys733Tyr	p.C733Y	ENST00000260947	NM_000465.2	733	tGc/tAc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661454	227661454	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	60	668	0	ENST00000305123.5:c.2001del	p.Ser668AlafsTer36	p.S668Afs*36	ENST00000305123	NM_005544.2	667	ccC/cc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37038120	37038120	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	34	196	0	ENST00000231790.2:c.127A>T	p.Lys43Ter	p.K43*	ENST00000231790	NM_000249.3	43	Aaa/Taa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807820	1807820	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200849753		P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	169	894	1	ENST00000260795.2:c.1879G>A	p.Glu627Lys	p.E627K	ENST00000260795		627	Gag/Aag																																																																															
TET2	54790	MSKCC	GRCh37	4	106162531	106162531	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	44	287	0	ENST00000380013.4:c.3445A>G	p.Thr1149Ala	p.T1149A	ENST00000380013	NM_001127208.2	1149	Acc/Gcc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044956	47044956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	140	812	0	ENST00000329236.7:c.2048G>A	p.Cys683Tyr	p.C683Y	ENST00000329236	NM_001204466.1	683	tGt/tAt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245115	53245115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	27	658	0	ENST00000375401.3:c.825G>T	p.Glu275Asp	p.E275D	ENST00000375401	NM_004187.3	275	gaG/gaT																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720647	89720649	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TTA	TTA	-			P-0050653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	50	403	0	ENST00000371953.3:c.802-4_802-2del		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0050790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	76	460	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0050790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	186	521	1	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0050790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	110	306	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112111325	112111325	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs397514031		P-0050790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	30	199	0	ENST00000257430.4:c.423-1G>A		p.X141_splice	ENST00000257430	NM_000038.5	141																																																																																
HGF	3082	MSKCC	GRCh37	7	81334992	81334992	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	101	518	0	ENST00000222390.5:c.1835G>T	p.Cys612Phe	p.C612F	ENST00000222390	NM_000601.4	612	tGc/tTc																																																																															
EED	8726	MSKCC	GRCh37	11	85961344	85961344	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138343311		P-0050932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	15	198	0	ENST00000263360.6:c.121G>A	p.Ala41Thr	p.A41T	ENST00000263360	NM_003797.3	41	Gct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	21	529	0	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																																																															
GPS2	2874	MSKCC	GRCh37	17	7218293	7218293	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	41	802	0	ENST00000380728.2:c.79G>T	p.Glu27Ter	p.E27*	ENST00000380728		27	Gag/Tag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0050932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	75	944	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0050932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	29	609	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0050932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	23	410	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135798867	135798867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	18	272	0	ENST00000298552.3:c.376G>A	p.Val126Ile	p.V126I	ENST00000298552	NM_001162426.1	126	Gtc/Atc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0051002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	92	417	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0051002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	81	344	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0051002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	169	367	8	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
APC	324	MSKCC	GRCh37	5	112174310	112174310	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0051002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	76	344	0	ENST00000257430.4:c.3019A>T	p.Lys1007Ter	p.K1007*	ENST00000257430	NM_000038.5	1007	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0051002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	163	677	0	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168969	32168969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	156	658	0	ENST00000375023.3:c.4064G>A	p.Arg1355Gln	p.R1355Q	ENST00000375023	NM_004557.3	1355	cGg/cAg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49927439	49927439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	175	632	0	ENST00000296474.3:c.3865C>T	p.Arg1289Cys	p.R1289C	ENST00000296474	NM_002447.2	1289	Cgc/Tgc																																																																															
TET1	80312	MSKCC	GRCh37	10	70333660	70333660	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	27	497	0	ENST00000373644.4:c.1565G>T	p.Gly522Val	p.G522V	ENST00000373644	NM_030625.2	522	gGa/gTa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11199670	11199670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	41	557	2	ENST00000361445.4:c.4918C>T	p.Arg1640Trp	p.R1640W	ENST00000361445	NM_004958.3	1640	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199450	16199450	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200367310		P-0051029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	31	434	0	ENST00000375759.3:c.223C>T	p.Arg75Cys	p.R75C	ENST00000375759	NM_015001.2	75	Cgc/Tgc																																																																															
TET1	80312	MSKCC	GRCh37	10	70404575	70404575	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0051029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	31	498	0	ENST00000373644.4:c.2093del	p.Asn698MetfsTer5	p.N698Mfs*5	ENST00000373644	NM_030625.2	697	Aaa/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438533	49438533	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	46	581	0	ENST00000301067.7:c.4957G>T	p.Gly1653Cys	p.G1653C	ENST00000301067	NM_003482.3	1653	Ggt/Tgt																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281836	49281836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	43	606	1	ENST00000282018.3:c.883G>A	p.Ala295Thr	p.A295T	ENST00000282018	NM_020377.2	295	Gca/Aca																																																																															
AKT1	207	MSKCC	GRCh37	14	105236744	105236745	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0051029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	49	657	0	ENST00000349310.3:c.1376_1377del	p.Glu459ValfsTer43	p.E459Vfs*43	ENST00000349310	NM_001014432.1	459	gAG/g																																																																															
MGA	23269	MSKCC	GRCh37	15	42028454	42028454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	36	397	0	ENST00000219905.7:c.3992G>A	p.Gly1331Asp	p.G1331D	ENST00000219905	NM_001164273.1	1331	gGt/gAt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43705449	43705450	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0051029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	50	719	0	ENST00000382044.4:c.5172_5173del	p.Gly1725AlafsTer23	p.G1725Afs*23	ENST00000382044	NM_001141980.1	1724	agAGgg/aggg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0051029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	14	451	1	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																															
NUP93	9688	MSKCC	GRCh37	16	56862933	56862933	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	31	465	0	ENST00000308159.5:c.839A>G	p.Gln280Arg	p.Q280R	ENST00000308159	NM_014669.4	280	cAg/cGg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17125878	17125878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	56	722	0	ENST00000285071.4:c.716G>A	p.Arg239His	p.R239H	ENST00000285071	NM_144997.5	239	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0051029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	56	774	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0051029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	54	633	2	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	46	720	2	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753887	42753887	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	54	759	0	ENST00000222329.4:c.377del	p.Gly126ValfsTer145	p.G126Vfs*145	ENST00000222329	NM_006494.2	126	gGt/gt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0051029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	21	268	0	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682400	52682400	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0051029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	17	422	0	ENST00000394830.3:c.773del	p.Asn258MetfsTer25	p.N258Mfs*25	ENST00000394830	NM_018313.4	258	aAt/at																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665096	138665096	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs758370933		P-0051029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	23	327	0	ENST00000330315.3:c.469C>G	p.Pro157Ala	p.P157A	ENST00000330315	NM_023067.3	157	Ccc/Gcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0051029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	31	439	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TET2	54790	MSKCC	GRCh37	4	106156202	106156202	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	34	405	0	ENST00000380013.4:c.1103A>T	p.Glu368Val	p.E368V	ENST00000380013	NM_001127208.2	368	gAa/gTa																																																																															
HGF	3082	MSKCC	GRCh37	7	81372731	81372731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	36	453	0	ENST00000222390.5:c.803G>T	p.Arg268Met	p.R268M	ENST00000222390	NM_000601.4	268	aGg/aTg																																																																															
BTK	695	MSKCC	GRCh37	X	100608237	100608237	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	41	299	1	ENST00000308731.7:c.1853G>T	p.Arg618Met	p.R618M	ENST00000308731	NM_000061.2	618	aGg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	155	375	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0051087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	173	545	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268144	153268144	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs920052554		P-0051087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	69	377	0	ENST00000281708.4:c.664C>T	p.Arg222Ter	p.R222*	ENST00000281708	NM_033632.3	222	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0051087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	112	254	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457639	67457640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0051087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	264	700	1	ENST00000327367.4:c.455dup	p.Leu153ThrfsTer13	p.L153Tfs*13	ENST00000327367	NM_005902.3	150	ttc/ttCc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78599490	78599490	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0051087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	41	370	0	ENST00000306801.3:c.163-1G>C		p.X55_splice	ENST00000306801	NM_020761.2	55																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0051225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	97	387	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1131691025		P-0051225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	84	499	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0051225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	53	285	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0051225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	22	310	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575666	48575667	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0051225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	60	400	0	ENST00000342988.3:c.430_431del	p.Ser144ArgfsTer7	p.S144Rfs*7	ENST00000342988	NM_005359.5	142	gaTCtc/gatc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216575	7216575	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	111	571	0	ENST00000380728.2:c.760A>C	p.Lys254Gln	p.K254Q	ENST00000380728		254	Aag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0051227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	166	591	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0051227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	38	317	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0051227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	43	190	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267306	41267306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	55	293	0	ENST00000349496.5:c.890C>T	p.Thr297Met	p.T297M	ENST00000349496	NM_001904.3	297	aCg/aTg																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873713	35873714	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0051227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	146	460	1	ENST00000216797.5:c.137_138delinsAT	p.Val46Asp	p.V46D	ENST00000216797	NM_020529.2	46	gTC/gAT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188363	32188363	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	120	647	0	ENST00000375023.3:c.978C>A	p.Cys326Ter	p.C326*	ENST00000375023	NM_004557.3	326	tgC/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0051328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	89	571	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	96	257	0	ENST00000257430.4:c.3944C>A	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0051330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	74	524	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735470	40735470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	171	498	0	ENST00000373198.4:c.3403G>A	p.Val1135Met	p.V1135M	ENST00000373198	NM_133170.3	1135	Gtg/Atg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346961	89346961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	35	483	0	ENST00000301030.4:c.5989G>A	p.Ala1997Thr	p.A1997T	ENST00000301030	NM_001256183.1	1997	Gcg/Acg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982393	201982394	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0051330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	84	699	0	ENST00000359651.3:c.775dup	p.Asp259GlyfsTer42	p.D259Gfs*42	ENST00000359651		258	tgg/tGgg																																																																															
NBN	4683	MSKCC	GRCh37	8	90993622	90993622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	20	223	0	ENST00000265433.3:c.301G>A	p.Val101Met	p.V101M	ENST00000265433	NM_002485.4	101	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	142	333	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0051331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	100	283	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856623	111856623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	87	156	0	ENST00000341259.2:c.674G>A	p.Arg225His	p.R225H	ENST00000341259	NM_005475.2	225	cGc/cAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911541	134911541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	296	403	1	ENST00000398015.3:c.2006C>T	p.Ala669Val	p.A669V	ENST00000398015	NM_004441.4	669	gCg/gTg																																																																															
ABL1	25	MSKCC	GRCh37	9	133759967	133759967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	215	604	0	ENST00000318560.5:c.2290C>T	p.Arg764Trp	p.R764W	ENST00000318560	NM_005157.4	764	Cgg/Tgg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5066740	5066740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	193	303	0	ENST00000381652.3:c.1277G>A	p.Arg426Gln	p.R426Q	ENST00000381652	NM_004972.3	426	cGa/cAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542456	187542456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	163	412	0	ENST00000441802.2:c.5284G>A	p.Ala1762Thr	p.A1762T	ENST00000441802	NM_005245.3	1762	Gcg/Acg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482802	67482803	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCTTTGCAGTGGCTTGACAAGGT			P-0051331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	229	457	0	ENST00000327367.4:c.1210_1232dup	p.Thr412CysfsTer72	p.T412Cfs*72	ENST00000327367	NM_005902.3	402	-/CCTTTGCAGTGGCTTGACAAGGT																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119697	70119700	+	frameshift_variant	Frame_Shift_Del	DEL	CCCA	CCCA	-			P-0051331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	102	474	0	ENST00000245479.2:c.701_704del	p.Pro234ArgfsTer18	p.P234Rfs*18	ENST00000245479	NM_000346.3	233	ggCCCA/gg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368171	45368228	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	TTTTCATGGGACTTGATTGGTGAAGCTTTATGACATGCTTGAGCAACGCACTGAAGGG	TTTTCATGGGACTTGATTGGTGAAGCTTTATGACATGCTTGAGCAACGCACTGAAGGG	-			P-0051331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	151	176	0	ENST00000262160.6:c.1374_*27del		p.*458*	ENST00000262160	NM_005901.5	458																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31022569	31022569	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	142	389	0	ENST00000375687.4:c.2054G>T	p.Gly685Val	p.G685V	ENST00000375687	NM_015338.5	685	gGa/gTa																																																																															
APC	324	MSKCC	GRCh37	5	112175782	112175783	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0051331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	96	271	0	ENST00000257430.4:c.4492_4493del	p.Asp1498TrpfsTer15	p.D1498Wfs*15	ENST00000257430	NM_000038.5	1497	ccAGat/ccat																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519816		P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	144	644	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112174490	112174493	+	frameshift_variant	Frame_Shift_Del	DEL	CAAT	CAAT	-	rs1267727476		P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	64	297	0	ENST00000257430.4:c.3202_3205del	p.Ser1068GlyfsTer57	p.S1068Gfs*57	ENST00000257430	NM_000038.5	1067	CAATca/ca																																																																															
NF1	4763	MSKCC	GRCh37	17	29486049	29486050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	73	289	0	ENST00000358273.4:c.233dup	p.Asn78LysfsTer29	p.N78Kfs*29	ENST00000358273	NM_001042492.2	76	gaa/gAaa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	138	349	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	82	391	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	183	506	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	235	745	2	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209616	98209617	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761353734		P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	96	624	0	ENST00000331920.6:c.3921dup	p.Arg1308GlnfsTer17	p.R1308Qfs*17	ENST00000331920	NM_000264.3	1307	-/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	106	432	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106421	27106421	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	135	557	0	ENST00000324856.7:c.6032T>G	p.Leu2011Arg	p.L2011R	ENST00000324856	NM_006015.4	2011	cTg/cGg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	74	314	3	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523313	176523313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	145	749	2	ENST00000292408.4:c.1970C>T	p.Ala657Val	p.A657V	ENST00000292408	NM_213647.1	657	gCg/gTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	71	409	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	15	384	0	ENST00000263967.3:c.1634A>C	p.Glu545Ala	p.E545A	ENST00000263967	NM_006218.2	545	gAg/gCg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	91	514	1	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2135246	2135246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	140	717	3	ENST00000219476.3:c.4585C>T	p.Arg1529Trp	p.R1529W	ENST00000219476	NM_000548.3	1529	Cgg/Tgg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47656969	47656969	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	80	288	1	ENST00000233146.2:c.1165C>T	p.Arg389Ter	p.R389*	ENST00000233146	NM_000251.2	389	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819261	3819261	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61731383		P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	105	526	0	ENST00000262367.5:c.2974G>A	p.Val992Ile	p.V992I	ENST00000262367	NM_004380.2	992	Gta/Ata																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098417	11098417	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	78	304	0	ENST00000344626.4:c.939del	p.Ala314ArgfsTer12	p.A314Rfs*12	ENST00000344626	NM_003072.3	312	tCc/tc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	223	478	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	145	618	2	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164508	47164508	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201756643		P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	62	350	0	ENST00000409792.3:c.1618C>T	p.Arg540Ter	p.R540*	ENST00000409792	NM_014159.6	540	Cga/Tga																																																																															
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	114	594	3	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435889	149435889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	101	560	0	ENST00000286301.3:c.2335G>A	p.Val779Met	p.V779M	ENST00000286301	NM_005211.3	779	Gtg/Atg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211899	36211899	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	120	670	4	ENST00000222270.7:c.1656del	p.Lys553AsnfsTer52	p.K553Nfs*52	ENST00000222270	NM_014727.1	550	gaC/ga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097688	27097688	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	118	524	0	ENST00000324856.7:c.3281del	p.Lys1094SerfsTer67	p.K1094Sfs*67	ENST00000324856	NM_006015.4	1093	Aaa/aa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775779	9775779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	134	701	3	ENST00000377346.4:c.322C>T	p.Arg108Cys	p.R108C	ENST00000377346	NM_005026.3	108	Cgc/Tgc																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2096314	2096314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	140	678	3	ENST00000219066.1:c.193C>T	p.Arg65Cys	p.R65C	ENST00000219066	NM_002528.5	65	Cgt/Tgt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67646012	67646013	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	88	413	1	ENST00000264010.4:c.950_951dup	p.Gly318GlnfsTer16	p.G318Qfs*16	ENST00000264010	NM_006565.3	314	aac/aACac																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803663	1803663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	124	694	2	ENST00000260795.2:c.841G>A	p.Ala281Thr	p.A281T	ENST00000260795		281	Gca/Aca																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120471799	120471799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	69	444	2	ENST00000256646.2:c.3692G>A	p.Arg1231Gln	p.R1231Q	ENST00000256646	NM_024408.3	1231	cGg/cAg																																																																															
CDK6	1021	MSKCC	GRCh37	7	92300846	92300846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	97	434	1	ENST00000265734.4:c.541G>A	p.Val181Ile	p.V181I	ENST00000265734	NM_001259.6	181	Gtc/Atc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89849299	89849299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	123	520	0	ENST00000389301.3:c.1594G>A	p.Glu532Lys	p.E532K	ENST00000389301	NM_000135.2	532	Gag/Aag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2120491	2120491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	128	711	0	ENST00000219476.3:c.1751C>T	p.Thr584Met	p.T584M	ENST00000219476	NM_000548.3	584	aCg/aTg																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72873689	72873690	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	81	320	0	ENST00000325599.8:c.612dup	p.Glu205Ter	p.E205*	ENST00000325599	NM_018130.2	204	-/T																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110050	115110050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	124	599	0	ENST00000257566.3:c.1828G>A	p.Ala610Thr	p.A610T	ENST00000257566	NM_016569.3	610	Gca/Aca																																																																															
RB1	5925	MSKCC	GRCh37	13	49054155	49054155	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	67	308	0	ENST00000267163.4:c.2738del	p.Lys913SerfsTer4	p.K913Sfs*4	ENST00000267163	NM_000321.2	912	cAa/ca																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99456424	99456424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	80	515	1	ENST00000268035.6:c.1741G>A	p.Val581Ile	p.V581I	ENST00000268035	NM_000875.3	581	Gtc/Atc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222368	2222368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	116	627	1	ENST00000326181.6:c.652G>A	p.Ala218Thr	p.A218T	ENST00000326181	NM_032271.2	218	Gcc/Acc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59878830	59878830	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	58	211	0	ENST00000259008.2:c.924del	p.Lys308AsnfsTer30	p.K308Nfs*30	ENST00000259008	NM_032043.2	308	aaA/aa																																																																															
CARM1	10498	MSKCC	GRCh37	19	11015681	11015681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	112	620	0	ENST00000327064.4:c.275G>A	p.Arg92His	p.R92H	ENST00000327064	NM_199141.1	92	cGt/cAt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272324	15272324	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	125	604	0	ENST00000263388.2:c.6115C>A	p.Leu2039Met	p.L2039M	ENST00000263388	NM_000435.2	2039	Ctg/Atg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221615	36221615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	152	714	0	ENST00000222270.7:c.5284C>A	p.Arg1762Ser	p.R1762S	ENST00000222270	NM_014727.1	1762	Cgt/Agt																																																																															
AKT2	208	MSKCC	GRCh37	19	40762911	40762911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	139	646	3	ENST00000392038.2:c.97G>A	p.Gly33Ser	p.G33S	ENST00000392038	NM_001626.4	33	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112179479	112179479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	75	355	0	ENST00000257430.4:c.8188G>A	p.Ala2730Thr	p.A2730T	ENST00000257430	NM_000038.5	2730	Gcc/Acc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522560	176522560	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201831200		P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	144	598	0	ENST00000292408.4:c.1657G>A	p.Ala553Thr	p.A553T	ENST00000292408	NM_213647.1	553	Gcc/Acc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178681	32178681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	143	694	0	ENST00000375023.3:c.2713G>T	p.Gly905Cys	p.G905C	ENST00000375023	NM_004557.3	905	Ggc/Tgc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94128975	94128975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	87	378	0	ENST00000369303.4:c.85G>A	p.Ala29Thr	p.A29T	ENST00000369303	NM_004440.3	29	Gct/Act																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192410	138192410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	63	238	0	ENST00000237289.4:c.46C>T	p.Arg16Trp	p.R16W	ENST00000237289	NM_001270507.1	16	Cgg/Tgg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38137196	38137196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	85	386	1	ENST00000317025.8:c.3622C>T	p.Arg1208Cys	p.R1208C	ENST00000317025	NM_023034.1	1208	Cgt/Tgt																																																																															
LYN	4067	MSKCC	GRCh37	8	56922596	56922596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	119	528	2	ENST00000519728.1:c.1466C>T	p.Thr489Met	p.T489M	ENST00000519728	NM_002350.3	489	aCg/aTg																																																																															
ABL1	25	MSKCC	GRCh37	9	133750320	133750320	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	89	472	0	ENST00000318560.5:c.1151T>C	p.Leu384Pro	p.L384P	ENST00000318560	NM_005157.4	384	cTg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0051349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	137	717	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0051349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	108	529	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112174658	112174658	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	71	402	1	ENST00000257430.4:c.3367C>T	p.Gln1123Ter	p.Q1123*	ENST00000257430	NM_000038.5	1123	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175755	112175759	+	frameshift_variant	Frame_Shift_Del	DEL	ATTAC	ATTAC	-			P-0051349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	27	414	0	ENST00000257430.4:c.4467_4471del	p.Leu1489PhefsTer23	p.L1489Ffs*23	ENST00000257430	NM_000038.5	1488	ttATTACat/ttat																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56491000	56491000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	58	697	0	ENST00000267101.3:c.2446G>A	p.Val816Ile	p.V816I	ENST00000267101	NM_001982.3	816	Gta/Ata																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716068	52716068	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	96	721	0	ENST00000322088.6:c.633C>A	p.Asn211Lys	p.N211K	ENST00000322088	NM_014225.5	211	aaC/aaA																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249496	153249496	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	107	560	0	ENST00000281708.4:c.1282C>T	p.Gln428Ter	p.Q428*	ENST00000281708	NM_033632.3	428	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	126	391	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953228	81953228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	66	271	0	ENST00000359376.3:c.2194C>T	p.Arg732Cys	p.R732C	ENST00000359376	NM_002661.3	732	Cgc/Tgc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356248	66356248	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202046693		P-0051439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	74	528	0	ENST00000273854.3:c.1249C>T	p.Arg417Trp	p.R417W	ENST00000273854	NM_004439.5	417	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579365	7579365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	105	698	1	ENST00000269305.4:c.322G>A	p.Gly108Ser	p.G108S	ENST00000269305	NM_001126112.2	108	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112174205	112174205	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0051439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	100	366	0	ENST00000257430.4:c.2915del	p.Gly972ValfsTer8	p.G972Vfs*8	ENST00000257430	NM_000038.5	972	Ggt/gt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928067	178928067	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	73	510	0	ENST00000263967.3:c.1345C>A	p.Pro449Thr	p.P449T	ENST00000263967	NM_006218.2	449	Cct/Act																																																																															
CDK8	1024	MSKCC	GRCh37	13	26927935	26927935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	44	343	0	ENST00000381527.3:c.374G>A	p.Arg125Gln	p.R125Q	ENST00000381527	NM_001260.1	125	cGg/cAg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477111	67477111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	104	538	1	ENST00000327367.4:c.918G>T	p.Glu306Asp	p.E306D	ENST00000327367	NM_005902.3	306	gaG/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	218	917	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0051446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	60	351	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87482169	87482169	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201028496		P-0051446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	56	733	0	ENST00000277120.3:c.1456G>A	p.Val486Ile	p.V486I	ENST00000277120		486	Gtt/Att																																																																															
TSC2	7249	MSKCC	GRCh37	16	2130168	2130168	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0051446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	32	967	0	ENST00000219476.3:c.3400G>A	p.Gly1134Ser	p.G1134S	ENST00000219476	NM_000548.3	1134	Ggc/Agc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622181	1622181	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	250	934	0	ENST00000344749.5:c.694G>T	p.Gly232Cys	p.G232C	ENST00000344749	NM_001136139.2	232	Ggc/Tgc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719248	190719248	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	58	370	0	ENST00000441310.2:c.1250G>C	p.Gly417Ala	p.G417A	ENST00000441310	NM_000534.4	417	gGt/gCt																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182681729	182681729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	64	558	0	ENST00000292782.4:c.329G>A	p.Arg110Lys	p.R110K	ENST00000292782	NM_020640.2	110	aGa/aAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0051482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	232	272	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0051482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	231	770	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0051482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	187	407	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968266	2968266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	181	956	0	ENST00000396946.4:c.1720G>A	p.Val574Ile	p.V574I	ENST00000396946	NM_032415.4	574	Gtc/Atc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604785	48604785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	116	416	0	ENST00000342988.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000342988	NM_005359.5	536	cTa/cCa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288888	15288888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	63	256	0	ENST00000263388.2:c.3851C>T	p.Pro1284Leu	p.P1284L	ENST00000263388	NM_000435.2	1284	cCg/cTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410438	139410438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	228	919	0	ENST00000277541.6:c.1664C>T	p.Thr555Met	p.T555M	ENST00000277541	NM_017617.3	555	aCg/aTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933535	39933535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	207	766	0	ENST00000378444.4:c.1064C>T	p.Ser355Leu	p.S355L	ENST00000378444	NM_001123385.1	355	tCg/tTg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912394	29912395	+	splice_donor_variant,intron_variant	Splice_Site	INS	GT	GT	AAGG			P-0051482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	37	540	0	ENST00000376809.5:c.1012+1_1012+2delinsAAGG		p.X338_splice	ENST00000376809	NM_002116.7	338																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0051489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	88	129	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0051489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	341	384	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	151	235	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101342	27101342	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	409	841	1	ENST00000324856.7:c.4624G>T	p.Glu1542Ter	p.E1542*	ENST00000324856	NM_006015.4	1542	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0051489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	335	612	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
APC	324	MSKCC	GRCh37	5	112175788	112175789	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0051489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	133	263	0	ENST00000257430.4:c.4500_4501dup	p.Ser1501PhefsTer7	p.S1501Ffs*7	ENST00000257430	NM_000038.5	1499	-/TT																																																																															
APC	324	MSKCC	GRCh37	5	112174106	112174106	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0051489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	116	218	0	ENST00000257430.4:c.2815A>T	p.Lys939Ter	p.K939*	ENST00000257430	NM_000038.5	939	Aag/Tag																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741951	17741951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	159	333	0	ENST00000250003.3:c.622G>A	p.Asp208Asn	p.D208N	ENST00000250003	NM_002478.4	208	Gac/Aac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249419	153249419	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0051489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	456	329	1	ENST00000281708.4:c.1359T>A	p.Cys453Ter	p.C453*	ENST00000281708	NM_033632.3	453	tgT/tgA																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739659	145739659	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	481	942	0	ENST00000428558.2:c.1792C>A	p.Pro598Thr	p.P598T	ENST00000428558	NM_004260.3	598	Cca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0051490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	33	407	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0051490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	183	691	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	175	654	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175271	112175271	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	128	264	0	ENST00000257430.4:c.3980C>A	p.Ser1327Ter	p.S1327*	ENST00000257430	NM_000038.5	1327	tCa/tAa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701282	43701283	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0051490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	100	412	0	ENST00000382044.4:c.5411_5412dup	p.Tyr1805LeufsTer6	p.Y1805Lfs*6	ENST00000382044	NM_001141980.1	1804	-/CT																																																																															
RAC1	5879	MSKCC	GRCh37	7	6438308	6438308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	299	467	0	ENST00000356142.4:c.241G>A	p.Gly81Ser	p.G81S	ENST00000356142	NM_018890.3	81	Ggt/Agt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	129	368	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ALK	238	MSKCC	GRCh37	2	29519818	29519818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	340	525	0	ENST00000389048.3:c.1753G>A	p.Ala585Thr	p.A585T	ENST00000389048	NM_004304.4	585	Gcc/Acc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589151	67589152	+	inframe_insertion	In_Frame_Ins	INS	-	-	AATCAA			P-0051580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	70	209	0	ENST00000274335.5:c.1143_1148dup	p.Lys382_Ile383dup	p.K382_I383dup	ENST00000274335		382	tta/ttAATCAAa																																																																															
EP300	2033	MSKCC	GRCh37	22	41523712	41523712	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0051580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	132	573	0	ENST00000263253.7:c.1130del	p.Asn377ThrfsTer3	p.N377Tfs*3	ENST00000263253	NM_001429.3	376	ctA/ct																																																																															
APC	324	MSKCC	GRCh37	5	112175748	112175748	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0051580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	151	342	0	ENST00000257430.4:c.4457del	p.Asp1486ValfsTer21	p.D1486Vfs*21	ENST00000257430	NM_000038.5	1486	gAt/gt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	178	514	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	114	318	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023544	31023544	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116112525		P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	153	490	0	ENST00000375687.4:c.3029C>T	p.Thr1010Met	p.T1010M	ENST00000375687	NM_015338.5	1010	aCg/aTg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	154	445	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
APC	324	MSKCC	GRCh37	5	112173656	112173656	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	102	393	0	ENST00000257430.4:c.2365C>T	p.Gln789Ter	p.Q789*	ENST00000257430	NM_000038.5	789	Cag/Tag																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085728	16085728	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144939456		P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	209	534	1	ENST00000281043.3:c.904C>T	p.Arg302Cys	p.R302C	ENST00000281043	NM_005378.4	302	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519930		P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	132	447	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	196	586	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	58	280	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395736	45395736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	143	367	0	ENST00000262160.6:c.398G>A	p.Arg133His	p.R133H	ENST00000262160	NM_005901.5	133	cGc/cAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851754	134851754	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56396912		P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	152	498	2	ENST00000398015.3:c.1160C>T	p.Thr387Met	p.T387M	ENST00000398015	NM_004441.4	387	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782596		P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	189	612	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99460005	99460005	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201631492		P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	177	462	0	ENST00000268035.6:c.2101G>A	p.Ala701Thr	p.A701T	ENST00000268035	NM_000875.3	701	Gcc/Acc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78428511	78428511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	158	472	0	ENST00000370768.2:c.1288C>T	p.Arg430Cys	p.R430C	ENST00000370768	NM_003902.3	430	Cgt/Tgt																																																																															
B2M	567	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	56	288	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
SOX9	6662	MSKCC	GRCh37	17	70120178	70120178	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057518216		P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	150	296	1	ENST00000245479.2:c.1180C>T	p.Arg394Ter	p.R394*	ENST00000245479	NM_000346.3	394	Cga/Tga																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182709	38182709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	234	496	0	ENST00000396334.3:c.862G>A	p.Asp288Asn	p.D288N	ENST00000396334	NM_002468.4	288	Gac/Aac																																																																															
CASP8	841	MSKCC	GRCh37	2	202141587	202141587	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771150445		P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	148	387	0	ENST00000358485.4:c.875G>A	p.Arg292Gln	p.R292Q	ENST00000358485	NM_001080125.1	292	cGg/cAg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685313	86685313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	98	209	0	ENST00000274376.6:c.3029G>A	p.Arg1010Gln	p.R1010Q	ENST00000274376	NM_002890.2	1010	cGa/cAa																																																																															
BARD1	580	MSKCC	GRCh37	2	215646084	215646085	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs746325928		P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	132	499	0	ENST00000260947.4:c.513dup	p.Asp172ArgfsTer10	p.D172Rfs*10	ENST00000260947	NM_000465.2	171	-/A																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928318	178928318	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	119	442	1	ENST00000263967.3:c.1504C>T	p.Arg502Ter	p.R502*	ENST00000263967	NM_006218.2	502	Cga/Tga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715678	30715678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	125	375	0	ENST00000359013.4:c.1411G>A	p.Asp471Asn	p.D471N	ENST00000359013	NM_001024847.2	471	Gat/Aat																																																																															
MTOR	2475	MSKCC	GRCh37	1	11269467	11269467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	162	470	1	ENST00000361445.4:c.3703C>T	p.Arg1235Trp	p.R1235W	ENST00000361445	NM_004958.3	1235	Cgg/Tgg																																																																															
B2M	567	MSKCC	GRCh37	15	45007901	45007901	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	105	390	0	ENST00000558401.1:c.346+2T>C		p.X116_splice	ENST00000558401	NM_004048.2	116																																																																																
GSK3B	2932	MSKCC	GRCh37	3	119666150	119666150	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	104	409	0	ENST00000316626.5:c.331C>T	p.Arg111Ter	p.R111*	ENST00000316626		111	Cga/Tga																																																																															
POLE	5426	MSKCC	GRCh37	12	133218348	133218348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	207	576	2	ENST00000320574.5:c.5263G>A	p.Gly1755Arg	p.G1755R	ENST00000320574	NM_006231.2	1755	Ggg/Agg																																																																															
TET2	54790	MSKCC	GRCh37	4	106180793	106180793	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	122	304	0	ENST00000380013.4:c.3821A>G	p.Gln1274Arg	p.Q1274R	ENST00000380013	NM_001127208.2	1274	cAg/cGg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56855485	56855485	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs79070284		P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	122	385	0	ENST00000308159.5:c.634G>A	p.Val212Ile	p.V212I	ENST00000308159	NM_014669.4	212	Gtc/Atc																																																																															
SRC	6714	MSKCC	GRCh37	20	36030877	36030877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	160	533	0	ENST00000358208.4:c.1156G>A	p.Val386Ile	p.V386I	ENST00000358208		386	Gtc/Atc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357185	89357185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	248	579	0	ENST00000301030.4:c.449C>T	p.Thr150Met	p.T150M	ENST00000301030	NM_001256183.1	150	aCg/aTg																																																																															
TP63	8626	MSKCC	GRCh37	3	189612250	189612250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	140	442	0	ENST00000264731.3:c.2002C>T	p.Arg668Cys	p.R668C	ENST00000264731	NM_003722.4	668	Cgc/Tgc																																																																															
E2F3	1871	MSKCC	GRCh37	6	20486948	20486948	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	100	344	0	ENST00000346618.3:c.913C>T	p.Arg305Ter	p.R305*	ENST00000346618	NM_001949.4	305	Cga/Tga																																																																															
INHA	3623	MSKCC	GRCh37	2	220437266	220437266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	192	661	0	ENST00000243786.2:c.170G>A	p.Arg57Gln	p.R57Q	ENST00000243786	NM_002191.3	57	cGg/cAg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38982057	38982057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	107	469	0	ENST00000357387.3:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000357387	NM_152756.3	222	cGa/cAa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346811	89346811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	106	394	0	ENST00000301030.4:c.6139G>A	p.Ala2047Thr	p.A2047T	ENST00000301030	NM_001256183.1	2047	Gcc/Acc																																																																															
KIT	3815	MSKCC	GRCh37	4	55589782	55589782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	137	403	0	ENST00000288135.5:c.1264G>A	p.Val422Met	p.V422M	ENST00000288135	NM_000222.2	422	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25368467	25368467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	129	393	0	ENST00000256078.4:c.478G>A	p.Val160Met	p.V160M	ENST00000256078	NM_033360.2	160	Gtg/Atg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12422929	12422929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	213	514	1	ENST00000287820.6:c.419G>A	p.Arg140His	p.R140H	ENST00000287820	NM_015869.4	140	cGt/cAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012245	152012245	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	105	411	1	ENST00000262189.6:c.568C>T	p.Arg190Ter	p.R190*	ENST00000262189	NM_170606.2	190	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445178	49445178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	195	677	0	ENST00000301067.7:c.2288C>T	p.Pro763Leu	p.P763L	ENST00000301067	NM_003482.3	763	cCg/cTg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469632	25469632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	189	515	0	ENST00000264709.3:c.1136G>A	p.Arg379His	p.R379H	ENST00000264709	NM_175629.2	379	cGc/cAc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2220637	2220637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	208	427	0	ENST00000326181.6:c.254G>A	p.Arg85His	p.R85H	ENST00000326181	NM_032271.2	85	cGc/cAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022455	31022455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	61	333	0	ENST00000375687.4:c.1940C>T	p.Pro647Leu	p.P647L	ENST00000375687	NM_015338.5	647	cCg/cTg																																																																															
MST1	4485	MSKCC	GRCh37	3	49723323	49723323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	29	94	0	ENST00000449682.2:c.1220G>A	p.Arg407His	p.R407H	ENST00000449682	NM_020998.3	407	cGc/cAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101923	11101923	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060502063		P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	205	664	0	ENST00000344626.4:c.1343G>A	p.Arg448His	p.R448H	ENST00000344626	NM_003072.3	448	cGc/cAc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434646	99434646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	214	581	0	ENST00000268035.6:c.733G>A	p.Asp245Asn	p.D245N	ENST00000268035	NM_000875.3	245	Gac/Aac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218848	36218848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	209	674	0	ENST00000222270.7:c.4459C>T	p.Arg1487Cys	p.R1487C	ENST00000222270	NM_014727.1	1487	Cgc/Tgc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900330	101900330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	107	415	0	ENST00000374994.4:c.764G>A	p.Arg255His	p.R255H	ENST00000374994	NM_004612.2	255	cGt/cAt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245109	46245109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	191	543	0	ENST00000334344.6:c.3203G>A	p.Arg1068His	p.R1068H	ENST00000334344	NM_152641.2	1068	cGt/cAt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300061	137300061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	72	597	0	ENST00000481739.1:c.346G>A	p.Val116Ile	p.V116I	ENST00000481739	NM_002957.4	116	Gtc/Atc																																																																															
LYN	4067	MSKCC	GRCh37	8	56866483	56866483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	223	551	1	ENST00000519728.1:c.730C>T	p.Arg244Trp	p.R244W	ENST00000519728	NM_002350.3	244	Cgg/Tgg																																																																															
MED12	9968	MSKCC	GRCh37	X	70343465	70343465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	202	566	0	ENST00000374080.3:c.1639G>A	p.Ala547Thr	p.A547T	ENST00000374080		547	Gca/Aca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244269	5244269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	199	614	1	ENST00000357368.4:c.1213G>A	p.Val405Ile	p.V405I	ENST00000357368	NM_002850.3	405	Gtc/Atc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178947872	178947872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	87	364	0	ENST00000263967.3:c.2747G>A	p.Arg916His	p.R916H	ENST00000263967	NM_006218.2	916	cGt/cAt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40468878	40468878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	182	406	0	ENST00000264657.5:c.2186G>A	p.Arg729His	p.R729H	ENST00000264657	NM_139276.2	729	cGc/cAc																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598910	28598910	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758133085		P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	228	598	1	ENST00000253063.3:c.470G>A	p.Arg157His	p.R157H	ENST00000253063	NM_031459.4	157	cGc/cAc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248057	110248057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	184	412	2	ENST00000374672.4:c.1415C>T	p.Ala472Val	p.A472V	ENST00000374672	NM_004235.4	472	gCc/gTc																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205266	61205266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	181	548	0	ENST00000301761.2:c.206G>A	p.Arg69His	p.R69H	ENST00000301761	NM_017841.2	69	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448461	49448461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	224	583	0	ENST00000301067.7:c.250C>T	p.Arg84Cys	p.R84C	ENST00000301067	NM_003482.3	84	Cgc/Tgc																																																																															
TERT	7015	MSKCC	GRCh37	5	1264549	1264549	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199741493		P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	129	513	0	ENST00000310581.5:c.2813G>A	p.Arg938Gln	p.R938Q	ENST00000310581	NM_198253.2	938	cGg/cAg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967285	25967285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	154	433	0	ENST00000435504.4:c.1921C>T	p.Arg641Cys	p.R641C	ENST00000435504		641	Cgt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993161	72993161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	122	683	1	ENST00000268489.5:c.884G>A	p.Arg295His	p.R295H	ENST00000268489	NM_006885.3	295	cGt/cAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29554277	29554277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	171	446	0	ENST00000358273.4:c.2293C>T	p.Arg765Cys	p.R765C	ENST00000358273	NM_001042492.2	765	Cgc/Tgc																																																																															
SDHB	6390	MSKCC	GRCh37	1	17371377	17371377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	153	375	0	ENST00000375499.3:c.79C>T	p.Arg27Ter	p.R27*	ENST00000375499	NM_003000.2	27	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106787	27106787	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	193	581	0	ENST00000324856.7:c.6398A>G	p.Asp2133Gly	p.D2133G	ENST00000324856	NM_006015.4	2133	gAc/gGc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45799231	45799231	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	173	508	0	ENST00000372115.3:c.160C>A	p.Leu54Met	p.L54M	ENST00000372115	NM_001048171.1	54	Ctg/Atg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176145082	176145082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138668228		P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	122	400	0	ENST00000367669.3:c.529G>A	p.Val177Met	p.V177M	ENST00000367669	NM_022457.5	177	Gtg/Atg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243668553	243668553	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	105	351	0	ENST00000263826.5:c.1438T>C	p.Ter480GlnextTer116	p.*480Qext*116	ENST00000263826	NM_005465.4	480	Taa/Caa																																																																															
PGR	5241	MSKCC	GRCh37	11	100998828	100998828	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	152	490	0	ENST00000325455.5:c.974A>G	p.Glu325Gly	p.E325G	ENST00000325455	NM_001202474.3	325	gAa/gGa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118348891	118348891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	145	321	0	ENST00000534358.1:c.3544C>T	p.Arg1182Cys	p.R1182C	ENST00000534358	NM_005933.3	1182	Cgc/Tgc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118362632	118362632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	146	397	1	ENST00000534358.1:c.4993C>T	p.Arg1665Cys	p.R1665C	ENST00000534358	NM_005933.3	1665	Cgc/Tgc																																																																															
POLE	5426	MSKCC	GRCh37	12	133245031	133245031	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	212	624	1	ENST00000320574.5:c.2084T>C	p.Phe695Ser	p.F695S	ENST00000320574	NM_006231.2	695	tTc/tCc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438192	110438192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	60	129	0	ENST00000375856.3:c.209C>T	p.Pro70Leu	p.P70L	ENST00000375856	NM_003749.2	70	cCg/cTg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244481	41244481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	137	536	0	ENST00000357654.3:c.3067G>A	p.Val1023Met	p.V1023M	ENST00000357654	NM_007294.3	1023	Gtg/Atg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2191024	2191024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	134	349	0	ENST00000398665.3:c.278C>T	p.Thr93Met	p.T93M	ENST00000398665	NM_032482.2	93	aCg/aTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222508	2222508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	179	452	0	ENST00000398665.3:c.3340G>A	p.Ala1114Thr	p.A1114T	ENST00000398665	NM_032482.2	1114	Gct/Act																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5218451	5218451	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201934952		P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	197	533	2	ENST00000357368.4:c.4028G>A	p.Arg1343His	p.R1343H	ENST00000357368	NM_002850.3	1343	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212590	36212590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	226	691	0	ENST00000222270.7:c.2341G>A	p.Gly781Ser	p.G781S	ENST00000222270	NM_014727.1	781	Ggt/Agt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033468	48033468	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	155	522	0	ENST00000234420.5:c.3772C>T	p.Gln1258Ter	p.Q1258*	ENST00000234420	NM_000179.2	1258	Caa/Taa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267344	198267344	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	163	524	0	ENST00000335508.6:c.2013A>G	p.Ile671Met	p.I671M	ENST00000335508	NM_012433.2	671	atA/atG																																																																															
BARD1	580	MSKCC	GRCh37	2	215609826	215609826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	121	423	0	ENST00000260947.4:c.1868G>A	p.Gly623Glu	p.G623E	ENST00000260947	NM_000465.2	623	gGg/gAg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023540	31023540	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	148	485	0	ENST00000375687.4:c.3025C>A	p.Leu1009Ile	p.L1009I	ENST00000375687	NM_015338.5	1009	Ctc/Atc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1920292	1920292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	228	573	0	ENST00000382891.5:c.1352G>A	p.Ser451Asn	p.S451N	ENST00000382891	NM_133335.3	451	aGc/aAc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131972860	131972860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	146	371	0	ENST00000265335.6:c.3443G>A	p.Arg1148His	p.R1148H	ENST00000265335		1148	cGt/cAt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149505091	149505091	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	192	578	0	ENST00000261799.4:c.1724A>G	p.Asp575Gly	p.D575G	ENST00000261799	NM_002609.3	575	gAc/gGc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057579	180057579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	201	619	0	ENST00000261937.6:c.376G>A	p.Ala126Thr	p.A126T	ENST00000261937	NM_182925.4	126	Gcc/Acc																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020720	26020720	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	81	294	0	ENST00000357647.3:c.3G>T	p.Met1?	p.M1?	ENST00000357647	NM_003529.2	1	atG/atT																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372418	55372418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	223	527	0	ENST00000297316.4:c.1108G>A	p.Val370Met	p.V370M	ENST00000297316	NM_022454.3	370	Gtg/Atg																																																																															
TEK	7010	MSKCC	GRCh37	9	27212762	27212762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	217	637	0	ENST00000380036.4:c.2744G>A	p.Arg915His	p.R915H	ENST00000380036	NM_000459.3	915	cGc/cAc																																																																															
SYK	6850	MSKCC	GRCh37	9	93639866	93639866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	89	250	0	ENST00000375746.1:c.1195G>A	p.Val399Met	p.V399M	ENST00000375746	NM_001174167.1	399	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	207	640	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	229	683	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440855	52440855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	195	564	1	ENST00000460680.1:c.649G>A	p.Ala217Thr	p.A217T	ENST00000460680	NM_004656.3	217	Gcc/Acc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112891035	112891035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	152	336	0	ENST00000351677.2:c.369G>T	p.Glu123Asp	p.E123D	ENST00000351677	NM_002834.3	123	gaG/gaT																																																																															
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	160	536	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	91	225	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28913371	28913371	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	69	588	0	ENST00000282397.4:c.2422G>T	p.Glu808Ter	p.E808*	ENST00000282397	NM_002019.4	808	Gag/Tag																																																																															
FANCC	2176	MSKCC	GRCh37	9	97897674	97897674	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	186	427	0	ENST00000289081.3:c.797G>T	p.Arg266Ile	p.R266I	ENST00000289081	NM_000136.2	266	aGa/aTa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727483	66727483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	166	472	0	ENST00000307102.5:c.199G>A	p.Asp67Asn	p.D67N	ENST00000307102	NM_002755.3	67	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579395	7579395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	153	684	1	ENST00000269305.4:c.292C>T	p.Pro98Ser	p.P98S	ENST00000269305	NM_001126112.2	98	Cct/Tct																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254906	16254906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	195	457	0	ENST00000375759.3:c.2171G>A	p.Arg724Gln	p.R724Q	ENST00000375759	NM_015001.2	724	cGa/cAa																																																																															
ATM	472	MSKCC	GRCh37	11	108172385	108172385	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs764389018		P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	124	352	0	ENST00000278616.4:c.5188C>T	p.Arg1730Ter	p.R1730*	ENST00000278616	NM_000051.3	1730	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	107	354	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430873	181430873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	218	754	0	ENST00000325404.1:c.725C>T	p.Ser242Leu	p.S242L	ENST00000325404	NM_003106.3	242	tCg/tTg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52712580	52712580	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	117	440	1	ENST00000394830.3:c.172C>T	p.Arg58Ter	p.R58*	ENST00000394830	NM_018313.4	58	Cga/Tga																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	395	484	0	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588981	67588981	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	36	251	1	ENST00000274335.5:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000274335		358	Cga/Tga																																																																															
TP63	8626	MSKCC	GRCh37	3	189612028	189612028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	158	426	2	ENST00000264731.3:c.1780C>T	p.Arg594Ter	p.R594*	ENST00000264731	NM_003722.4	594	Cga/Tga																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127915943	127915943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	79	508	1	ENST00000373547.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000373547	NM_002721.4	180	Gaa/Aaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270180	66270180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	109	273	0	ENST00000273854.3:c.1702G>A	p.Asp568Asn	p.D568N	ENST00000273854	NM_004439.5	568	Gat/Aat																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52582108	52582108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	33	291	1	ENST00000394830.3:c.4720C>T	p.Arg1574Cys	p.R1574C	ENST00000394830	NM_018313.4	1574	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593519	48593519	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	89	233	0	ENST00000342988.3:c.1270G>T	p.Asp424Tyr	p.D424Y	ENST00000342988	NM_005359.5	424	Gat/Tat																																																																															
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	134	322	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	164	450	0	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	461474	461474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	202	425	1	ENST00000399788.2:c.1046G>A	p.Arg349Gln	p.R349Q	ENST00000399788	NM_001042603.1	349	cGa/cAa																																																																															
CDK6	1021	MSKCC	GRCh37	7	92404119	92404119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	149	350	0	ENST00000265734.4:c.260G>A	p.Arg87Gln	p.R87Q	ENST00000265734	NM_001259.6	87	cGa/cAa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61720166	61720166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	162	363	0	ENST00000401558.2:c.1268G>A	p.Arg423Gln	p.R423Q	ENST00000401558	NM_003400.3	423	cGa/cAa																																																																															
EED	8726	MSKCC	GRCh37	11	85989562	85989562	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	55	337	0	ENST00000263360.6:c.1321C>T	p.Arg441Ter	p.R441*	ENST00000263360	NM_003797.3	441	Cga/Tga																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245825	41245825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	218	555	1	ENST00000357654.3:c.1723G>A	p.Glu575Lys	p.E575K	ENST00000357654	NM_007294.3	575	Gaa/Aaa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884908	134884908	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202034365		P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	113	477	1	ENST00000398015.3:c.1684G>A	p.Val562Ile	p.V562I	ENST00000398015	NM_004441.4	562	Gtc/Atc																																																																															
MED12	9968	MSKCC	GRCh37	X	70357745	70357745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	48	700	0	ENST00000374080.3:c.5996T>C	p.Val1999Ala	p.V1999A	ENST00000374080		1999	gTg/gCg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637690	52637690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	202	475	0	ENST00000394830.3:c.2626C>T	p.Arg876Cys	p.R876C	ENST00000394830	NM_018313.4	876	Cgt/Tgt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	137	338	0	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87482242	87482242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	213	564	0	ENST00000277120.3:c.1529C>T	p.Ser510Leu	p.S510L	ENST00000277120		510	tCg/tTg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148513849	148513849	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	154	412	0	ENST00000320356.2:c.1432G>T	p.Glu478Ter	p.E478*	ENST00000320356	NM_004456.4	478	Gaa/Taa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57480495	57480495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	108	316	0	ENST00000371085.3:c.490G>A	p.Glu164Lys	p.E164K	ENST00000371085	NM_000516.4	164	Gaa/Aaa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212008	5212008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	180	549	1	ENST00000357368.4:c.5023G>A	p.Glu1675Lys	p.E1675K	ENST00000357368	NM_002850.3	1675	Gaa/Aaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685268	89685268	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	87	198	0	ENST00000371953.3:c.165-2A>C		p.X55_splice	ENST00000371953	NM_000314.4	55																																																																																
ROS1	6098	MSKCC	GRCh37	6	117718123	117718123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	154	589	1	ENST00000368508.3:c.734G>T	p.Arg245Ile	p.R245I	ENST00000368508	NM_002944.2	245	aGa/aTa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710666	114710666	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	141	444	0	ENST00000543371.1:c.151G>T	p.Glu51Ter	p.E51*	ENST00000543371	NM_001198531.1	51	Gaa/Taa																																																																															
KDR	3791	MSKCC	GRCh37	4	55961109	55961109	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374755237		P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	167	440	0	ENST00000263923.4:c.2831G>A	p.Arg944Gln	p.R944Q	ENST00000263923	NM_002253.2	944	cGa/cAa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857436	9857436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	52	464	0	ENST00000330684.3:c.3965G>A	p.Gly1322Glu	p.G1322E	ENST00000330684	NM_001134407.1	1322	gGa/gAa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152201885	152201885	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778449608		P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	120	296	1	ENST00000206249.3:c.739G>A	p.Glu247Lys	p.E247K	ENST00000206249	NM_000125.3	247	Gaa/Aaa																																																																															
MGA	23269	MSKCC	GRCh37	15	42021441	42021441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	180	496	1	ENST00000219905.7:c.3737G>A	p.Arg1246Gln	p.R1246Q	ENST00000219905	NM_001164273.1	1246	cGa/cAa																																																																															
RB1	5925	MSKCC	GRCh37	13	49030396	49030396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	143	365	0	ENST00000267163.4:c.1871C>A	p.Ser624Tyr	p.S624Y	ENST00000267163	NM_000321.2	624	tCt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112154954	112154954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	56	531	1	ENST00000257430.4:c.1225C>A	p.Leu409Ile	p.L409I	ENST00000257430	NM_000038.5	409	Ctt/Att																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55136805	55136805	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41279521		P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	140	331	0	ENST00000257290.5:c.1127G>A	p.Arg376Gln	p.R376Q	ENST00000257290	NM_006206.4	376	cGa/cAa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56409145	56409145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	59	367	0	ENST00000348428.3:c.1652G>A	p.Arg551Gln	p.R551Q	ENST00000348428	NM_006785.3	551	cGa/cAa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197747	66197747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	165	357	0	ENST00000273854.3:c.2952G>T	p.Glu984Asp	p.E984D	ENST00000273854	NM_004439.5	984	gaG/gaT																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618727	37618727	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	172	499	0	ENST00000447079.4:c.403G>T	p.Glu135Ter	p.E135*	ENST00000447079	NM_015083.1	135	Gaa/Taa																																																																															
RHOA	387	MSKCC	GRCh37	3	49397767	49397767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	234	493	1	ENST00000418115.1:c.457G>A	p.Ala153Thr	p.A153T	ENST00000418115	NM_001664.2	153	Gct/Act																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116173	209116173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	116	353	0	ENST00000345146.2:c.103G>A	p.Val35Met	p.V35M	ENST00000345146	NM_005896.2	35	Gtg/Atg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29005327	29005327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	143	462	0	ENST00000282397.4:c.934C>T	p.Arg312Cys	p.R312C	ENST00000282397	NM_002019.4	312	Cgt/Tgt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001395	150001395	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	162	524	1	ENST00000253339.5:c.2209C>T	p.Arg737Ter	p.R737*	ENST00000253339		737	Cga/Tga																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46267784	46267784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	231	523	0	ENST00000371998.3:c.2545C>T	p.Arg849Cys	p.R849C	ENST00000371998		849	Cgt/Tgt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210506	5210506	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	191	563	0	ENST00000357368.4:c.5461C>T	p.Arg1821Ter	p.R1821*	ENST00000357368	NM_002850.3	1821	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952013	178952013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	49	392	0	ENST00000263967.3:c.3068G>A	p.Arg1023Gln	p.R1023Q	ENST00000263967	NM_006218.2	1023	cGa/cAa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672787	86672787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	138	300	1	ENST00000274376.6:c.2274G>T	p.Arg758Ser	p.R758S	ENST00000274376	NM_002890.2	758	agG/agT																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864328	57864328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201538749		P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	216	559	1	ENST00000228682.2:c.1805C>T	p.Ser602Leu	p.S602L	ENST00000228682	NM_005269.2	602	tCg/tTg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046638	30046638	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	150	490	0	ENST00000331968.5:c.2545C>T	p.Arg849Ter	p.R849*	ENST00000331968	NM_002742.2	849	Cga/Tga																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724723	112724723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	133	429	0	ENST00000369452.4:c.607C>T	p.Arg203Cys	p.R203C	ENST00000369452	NM_007373.3	203	Cgt/Tgt																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260151	149260151	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	149	458	0	ENST00000360632.3:c.742C>T	p.Arg248Ter	p.R248*	ENST00000360632	NM_015472.4	248	Cga/Tga																																																																															
MST1	4485	MSKCC	GRCh37	3	49723053	49723053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	56	161	2	ENST00000449682.2:c.1363G>A	p.Asp455Asn	p.D455N	ENST00000449682	NM_020998.3	455	Gac/Aac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251901	153251901	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	166	365	0	ENST00000281708.4:c.1105G>T	p.Glu369Ter	p.E369*	ENST00000281708	NM_033632.3	369	Gaa/Taa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48028136	48028136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	124	352	0	ENST00000234420.5:c.3014G>A	p.Arg1005Gln	p.R1005Q	ENST00000234420	NM_000179.2	1005	cGa/cAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161750	56161750	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	182	507	0	ENST00000399503.3:c.1247C>A	p.Ser416Ter	p.S416*	ENST00000399503	NM_005921.1	416	tCa/tAa																																																																															
AXL	558	MSKCC	GRCh37	19	41727811	41727811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	236	721	1	ENST00000301178.4:c.436G>A	p.Glu146Lys	p.E146K	ENST00000301178	NM_021913.4	146	Gaa/Aaa																																																																															
PGR	5241	MSKCC	GRCh37	11	100999588	100999588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	254	817	1	ENST00000325455.5:c.214G>A	p.Glu72Lys	p.E72K	ENST00000325455	NM_001202474.3	72	Gaa/Aaa																																																																															
NUF2	83540	MSKCC	GRCh37	1	163297332	163297332	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	153	440	1	ENST00000271452.3:c.178C>T	p.Arg60Ter	p.R60*	ENST00000271452	NM_145697.2	60	Cga/Tga																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56772345	56772345	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	163	440	1	ENST00000337432.4:c.199G>T	p.Glu67Ter	p.E67*	ENST00000337432	NM_058216.2	67	Gaa/Taa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851828	63851828	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201944744		P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	222	612	0	ENST00000279873.7:c.2606C>A	p.Ser869Tyr	p.S869Y	ENST00000279873	NM_032199.2	869	tCt/tAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720822	89720822	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	100	290	0	ENST00000371953.3:c.973C>A	p.Leu325Ile	p.L325I	ENST00000371953	NM_000314.4	325	Ctt/Att																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528631	89528631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	81	235	0	ENST00000336596.2:c.2931G>T	p.Lys977Asn	p.K977N	ENST00000336596	NM_005233.5	977	aaG/aaT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513165	106513165	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	32	266	0	ENST00000359195.3:c.2069G>T	p.Arg690Ile	p.R690I	ENST00000359195	NM_002649.2	690	aGa/aTa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47004894	47004894	+	intron_variant	Intron	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	203	499	1	ENST00000377604.3:c.-126+10G>A		p.*42*	ENST00000377604	NM_001204468.1																																																																																	
SPEN	23013	MSKCC	GRCh37	1	16242692	16242692	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	191	528	0	ENST00000375759.3:c.1313G>T	p.Arg438Ile	p.R438I	ENST00000375759	NM_015001.2	438	aGa/aTa																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288236	33288236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	203	498	0	ENST00000374542.5:c.1172G>T	p.Arg391Ile	p.R391I	ENST00000374542	NM_001141970.1	391	aGa/aTa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673442	30673442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	217	633	0	ENST00000376406.3:c.3518C>T	p.Ser1173Phe	p.S1173F	ENST00000376406	NM_014641.2	1173	tCc/tTc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522657	67522657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	114	286	0	ENST00000274335.5:c.154G>T	p.Glu52Ter	p.E52*	ENST00000274335		52	Gaa/Taa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356241	66356241	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	72	479	1	ENST00000273854.3:c.1256G>T	p.Ser419Ile	p.S419I	ENST00000273854	NM_004439.5	419	aGc/aTc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31020765	31020765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	57	251	0	ENST00000375687.4:c.1062C>A	p.Phe354Leu	p.F354L	ENST00000375687	NM_015338.5	354	ttC/ttA																																																																															
POLE	5426	MSKCC	GRCh37	12	133219468	133219468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	234	706	0	ENST00000320574.5:c.4666C>T	p.Arg1556Trp	p.R1556W	ENST00000320574	NM_006231.2	1556	Cgg/Tgg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685303	89685303	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	86	253	0	ENST00000371953.3:c.198G>T	p.Lys66Asn	p.K66N	ENST00000371953	NM_000314.4	66	aaG/aaT																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910721	29910721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1389	143	1011	0	ENST00000376809.5:c.261G>T	p.Glu87Asp	p.E87D	ENST00000376809	NM_002116.7	87	gaG/gaT																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025841	48025841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	119	277	0	ENST00000234420.5:c.719G>A	p.Arg240Gln	p.R240Q	ENST00000234420	NM_000179.2	240	cGa/cAa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038531	47038531	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	428	638	0	ENST00000329236.7:c.462G>T	p.Glu154Asp	p.E154D	ENST00000329236	NM_001204466.1	154	gaG/gaT																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285495	38285495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	206	563	0	ENST00000425967.3:c.658C>T	p.Arg220Cys	p.R220C	ENST00000425967	NM_001174067.1	220	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952012	178952012	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	141	398	0	ENST00000263967.3:c.3067C>T	p.Arg1023Ter	p.R1023*	ENST00000263967	NM_006218.2	1023	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630410	187630410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	221	627	1	ENST00000441802.2:c.572G>A	p.Arg191Gln	p.R191Q	ENST00000441802	NM_005245.3	191	cGa/cAa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44941842	44941842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	171	351	0	ENST00000377967.4:c.3166C>A	p.His1056Asn	p.H1056N	ENST00000377967	NM_021140.2	1056	Cat/Aat																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157510782	157510782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	161	426	0	ENST00000346085.5:c.3557C>T	p.Ser1186Leu	p.S1186L	ENST00000346085	NM_020732.3	1186	tCg/tTg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59871053	59871053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	143	347	0	ENST00000259008.2:c.1378G>T	p.Asp460Tyr	p.D460Y	ENST00000259008	NM_032043.2	460	Gat/Tat																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166202	118166202	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	150	343	0	ENST00000369448.3:c.712G>T	p.Glu238Ter	p.E238*	ENST00000369448	NM_017709.3	238	Gaa/Taa																																																																															
SMO	6608	MSKCC	GRCh37	7	128849185	128849185	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	90	584	0	ENST00000249373.3:c.1413C>A	p.Phe471Leu	p.F471L	ENST00000249373	NM_005631.4	471	ttC/ttA																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066846	30066846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	66	538	2	ENST00000331968.5:c.2285G>A	p.Arg762His	p.R762H	ENST00000331968	NM_002742.2	762	cGc/cAc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131972851	131972851	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	166	362	0	ENST00000265335.6:c.3434A>C	p.Lys1145Thr	p.K1145T	ENST00000265335		1145	aAa/aCa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657596	37657596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	251	551	2	ENST00000447079.4:c.2513C>T	p.Ser838Leu	p.S838L	ENST00000447079	NM_015083.1	838	tCg/tTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827733	72827733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	194	508	0	ENST00000268489.5:c.8848C>T	p.Arg2950Cys	p.R2950C	ENST00000268489	NM_006885.3	2950	Cgc/Tgc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919074	50919074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	187	519	0	ENST00000440232.2:c.2811G>T	p.Met937Ile	p.M937I	ENST00000440232	NM_002691.3	937	atG/atT																																																																															
APC	324	MSKCC	GRCh37	5	112176882	112176882	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	133	406	0	ENST00000257430.4:c.5591C>A	p.Ser1864Tyr	p.S1864Y	ENST00000257430	NM_000038.5	1864	tCt/tAt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229562	98229562	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	74	411	0	ENST00000331920.6:c.2396C>A	p.Ser799Tyr	p.S799Y	ENST00000331920	NM_000264.3	799	tCt/tAt																																																																															
ALK	238	MSKCC	GRCh37	2	30143240	30143240	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	101	572	0	ENST00000389048.3:c.286G>A	p.Ala96Thr	p.A96T	ENST00000389048	NM_004304.4	96	Gcc/Acc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871034	12871034	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	141	375	0	ENST00000228872.4:c.261C>A	p.Phe87Leu	p.F87L	ENST00000228872	NM_004064.3	87	ttC/ttA																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258874	16258874	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	257	575	2	ENST00000375759.3:c.6139G>T	p.Asp2047Tyr	p.D2047Y	ENST00000375759	NM_015001.2	2047	Gat/Tat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088693	27088693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	231	661	1	ENST00000324856.7:c.2302G>A	p.Gly768Ser	p.G768S	ENST00000324856	NM_006015.4	768	Ggc/Agc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937177	36937177	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	69	661	0	ENST00000361632.4:c.1142C>A	p.Ala381Asp	p.A381D	ENST00000361632		381	gCt/gAt																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363096	40363096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	176	510	0	ENST00000397332.2:c.1133G>A	p.Arg378Gln	p.R378Q	ENST00000397332	NM_001033082.2	378	cGa/cAa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339132	65339132	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	168	410	0	ENST00000342505.4:c.404A>C	p.Lys135Thr	p.K135T	ENST00000342505	NM_002227.2	135	aAa/aCa																																																																															
PARP1	142	MSKCC	GRCh37	1	226551698	226551698	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	82	491	0	ENST00000366794.5:c.2732C>A	p.Ser911Tyr	p.S911Y	ENST00000366794	NM_001618.3	911	tCt/tAt																																																																															
PARP1	142	MSKCC	GRCh37	1	226576406	226576406	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	206	439	0	ENST00000366794.5:c.668A>C	p.Lys223Thr	p.K223T	ENST00000366794	NM_001618.3	223	aAa/aCa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100271	8100271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	192	561	0	ENST00000346208.3:c.245G>A	p.Ser82Asn	p.S82N	ENST00000346208		82	aGc/aAc																																																																															
RET	5979	MSKCC	GRCh37	10	43601837	43601837	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	64	485	0	ENST00000355710.3:c.881C>A	p.Ala294Asp	p.A294D	ENST00000355710	NM_020975.4	294	gCc/gAc																																																																															
TET1	80312	MSKCC	GRCh37	10	70405313	70405313	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	178	501	1	ENST00000373644.4:c.2827G>T	p.Asp943Tyr	p.D943Y	ENST00000373644	NM_030625.2	943	Gac/Tac																																																																															
TET1	80312	MSKCC	GRCh37	10	70446144	70446144	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	145	428	0	ENST00000373644.4:c.5084C>A	p.Ser1695Tyr	p.S1695Y	ENST00000373644	NM_030625.2	1695	tCt/tAt																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274702	123274702	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	95	557	0	ENST00000358487.5:c.1216A>G	p.Lys406Glu	p.K406E	ENST00000358487	NM_000141.4	406	Aag/Gag																																																																															
LMO1	4004	MSKCC	GRCh37	11	8246251	8246251	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	129	386	0	ENST00000335790.3:c.383A>C	p.Lys128Thr	p.K128T	ENST00000335790	NM_002315.2	128	aAa/aCa																																																																															
PAK1	5058	MSKCC	GRCh37	11	77103453	77103453	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	165	351	1	ENST00000356341.3:c.113C>A	p.Ser38Tyr	p.S38Y	ENST00000356341	NM_002576.4	38	tCt/tAt																																																																															
EED	8726	MSKCC	GRCh37	11	85961454	85961454	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	69	212	0	ENST00000263360.6:c.231A>C	p.Lys77Asn	p.K77N	ENST00000263360	NM_003797.3	77	aaA/aaC																																																																															
EED	8726	MSKCC	GRCh37	11	85963278	85963278	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	99	331	0	ENST00000263360.6:c.356A>G	p.Asn119Ser	p.N119S	ENST00000263360	NM_003797.3	119	aAc/aGc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	459805	459805	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	225	580	1	ENST00000399788.2:c.1290G>T	p.Lys430Asn	p.K430N	ENST00000399788	NM_001042603.1	430	aaG/aaT																																																																															
RAD52	5893	MSKCC	GRCh37	12	1039050	1039050	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	134	464	0	ENST00000358495.3:c.283T>G	p.Phe95Val	p.F95V	ENST00000358495	NM_134424.2	95	Ttt/Gtt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435426	18435426	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	91	321	0	ENST00000266497.5:c.411T>A	p.Asp137Glu	p.D137E	ENST00000266497		137	gaT/gaA																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56490288	56490288	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	94	255	0	ENST00000267101.3:c.2057G>A	p.Ser686Asn	p.S686N	ENST00000267101	NM_001982.3	686	aGc/aAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114276	115114276	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	159	430	0	ENST00000257566.3:c.942-1G>T		p.X314_splice	ENST00000257566	NM_016569.3	314																																																																																
MSI1	4440	MSKCC	GRCh37	12	120794806	120794806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	267	748	1	ENST00000257552.2:c.551C>T	p.Ala184Val	p.A184V	ENST00000257552	NM_002442.3	184	gCt/gTt																																																																															
SETD8	387893	MSKCC	GRCh37	12	123875203	123875203	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	109	308	0	ENST00000330479.4:c.159G>T	p.Lys53Asn	p.K53N	ENST00000330479	NM_020382.3	53	aaG/aaT																																																																															
LATS2	26524	MSKCC	GRCh37	13	21619920	21619920	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	144	529	0	ENST00000382592.4:c.246T>G	p.Tyr82Ter	p.Y82*	ENST00000382592	NM_014572.2	82	taT/taG																																																																															
CDK8	1024	MSKCC	GRCh37	13	26959474	26959474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	115	308	0	ENST00000381527.3:c.641C>T	p.Ala214Val	p.A214V	ENST00000381527	NM_001260.1	214	gCt/gTt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28588623	28588623	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	84	467	0	ENST00000241453.7:c.2825T>G	p.Phe942Cys	p.F942C	ENST00000241453	NM_004119.2	942	tTt/tGt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32893435	32893435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	110	269	0	ENST00000380152.3:c.289G>A	p.Glu97Lys	p.E97K	ENST00000380152		97	Gaa/Aaa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900278	32900278	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	46	333	0	ENST00000380152.3:c.466G>T	p.Asp156Tyr	p.D156Y	ENST00000380152		156	Gat/Tat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912436	32912436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	125	362	0	ENST00000380152.3:c.3944G>T	p.Arg1315Ile	p.R1315I	ENST00000380152		1315	aGa/aTa																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281068	49281068	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	201	623	2	ENST00000282018.3:c.115G>T	p.Glu39Ter	p.E39*	ENST00000282018	NM_020377.2	39	Gaa/Taa																																																																															
B2M	567	MSKCC	GRCh37	15	45007773	45007773	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	158	415	0	ENST00000558401.1:c.220T>G	p.Leu74Val	p.L74V	ENST00000558401	NM_004048.2	74	Ttg/Gtg																																																																															
BLM	641	MSKCC	GRCh37	15	91304322	91304322	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	85	388	0	ENST00000355112.3:c.1719T>G	p.Asn573Lys	p.N573K	ENST00000355112	NM_000057.2	573	aaT/aaG																																																																															
SLX4	84464	MSKCC	GRCh37	16	3652228	3652228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	239	636	0	ENST00000294008.3:c.841G>A	p.Ala281Thr	p.A281T	ENST00000294008	NM_032444.2	281	Gca/Aca																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658572	3658572	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	242	685	0	ENST00000294008.3:c.394G>T	p.Glu132Ter	p.E132*	ENST00000294008	NM_032444.2	132	Gaa/Taa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828036	72828036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1115	117	792	1	ENST00000268489.5:c.8545G>T	p.Asp2849Tyr	p.D2849Y	ENST00000268489	NM_006885.3	2849	Gac/Tac																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81939061	81939061	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	179	561	0	ENST00000359376.3:c.1416G>T	p.Lys472Asn	p.K472N	ENST00000359376	NM_002661.3	472	aaG/aaT																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974968	15974968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	135	344	0	ENST00000268712.3:c.3907G>A	p.Ala1303Thr	p.A1303T	ENST00000268712	NM_006311.3	1303	Gca/Aca																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004702	16004702	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	185	575	0	ENST00000268712.3:c.2552A>G	p.Glu851Gly	p.E851G	ENST00000268712	NM_006311.3	851	gAg/gGg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245371	41245371	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	249	584	0	ENST00000357654.3:c.2177T>A	p.Leu726His	p.L726H	ENST00000357654	NM_007294.3	726	cTt/cAt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59886011	59886011	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	73	540	0	ENST00000259008.2:c.735A>C	p.Lys245Asn	p.K245N	ENST00000259008	NM_032043.2	245	aaA/aaC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604723	48604723	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	270	402	0	ENST00000342988.3:c.1545A>C	p.Arg515Ser	p.R515S	ENST00000342988	NM_005359.5	515	agA/agC																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288721	15288721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	30	61	0	ENST00000263388.2:c.4018G>A	p.Ala1340Thr	p.A1340T	ENST00000263388	NM_000435.2	1340	Gcg/Acg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292584	15292584	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	106	668	0	ENST00000263388.2:c.2595A>T	p.Gln865His	p.Q865H	ENST00000263388	NM_000435.2	865	caA/caT																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257167	19257167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	240	555	0	ENST00000162023.5:c.796C>T	p.Pro266Ser	p.P266S	ENST00000162023		266	Ccc/Tcc																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140095	50140095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	95	619	0	ENST00000246792.3:c.330T>G	p.Ile110Met	p.I110M	ENST00000246792	NM_006270.3	110	atT/atG																																																																															
ALK	238	MSKCC	GRCh37	2	29416271	29416271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	163	546	0	ENST00000389048.3:c.4682C>T	p.Ser1561Leu	p.S1561L	ENST00000389048	NM_004304.4	1561	tCg/tTg																																																																															
ALK	238	MSKCC	GRCh37	2	29416371	29416371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	226	689	1	ENST00000389048.3:c.4582C>T	p.His1528Tyr	p.H1528Y	ENST00000389048	NM_004304.4	1528	Cac/Tac																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47606129	47606129	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	147	408	1	ENST00000263735.4:c.593A>C	p.Asn198Thr	p.N198T	ENST00000263735	NM_002354.2	198	aAt/aCt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47672773	47672773	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	183	489	0	ENST00000233146.2:c.1363G>T	p.Glu455Ter	p.E455*	ENST00000233146	NM_000251.2	455	Gaa/Taa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030689	48030689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	60	359	0	ENST00000234420.5:c.3303G>T	p.Lys1101Asn	p.K1101N	ENST00000234420	NM_000179.2	1101	aaG/aaT																																																																															
XPO1	7514	MSKCC	GRCh37	2	61715794	61715794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	125	354	0	ENST00000401558.2:c.2135G>A	p.Arg712Lys	p.R712K	ENST00000401558	NM_003400.3	712	aGa/aAa																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719091	190719091	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	110	288	0	ENST00000441310.2:c.1093G>T	p.Glu365Ter	p.E365*	ENST00000441310	NM_000534.4	365	Gaa/Taa																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719668	190719668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	82	234	0	ENST00000441310.2:c.1670C>T	p.Ser557Phe	p.S557F	ENST00000441310	NM_000534.4	557	tCt/tTt																																																																															
CASP8	841	MSKCC	GRCh37	2	202131426	202131426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	164	493	0	ENST00000358485.4:c.394G>A	p.Asp132Asn	p.D132N	ENST00000358485	NM_001080125.1	132	Gat/Aat																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212537887	212537887	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	151	402	0	ENST00000342788.4:c.1716+2T>C		p.X572_splice	ENST00000342788	NM_005235.2	572																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212568839	212568839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	110	399	2	ENST00000342788.4:c.1279G>T	p.Val427Leu	p.V427L	ENST00000342788	NM_005235.2	427	Gta/Tta																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212570093	212570093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	35	365	1	ENST00000342788.4:c.1148C>T	p.Ala383Val	p.A383V	ENST00000342788	NM_005235.2	383	gCc/gTc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225422429	225422429	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	158	460	1	ENST00000264414.4:c.211G>T	p.Glu71Ter	p.E71*	ENST00000264414	NM_003590.4	71	Gaa/Taa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31387110	31387110	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	95	548	0	ENST00000328111.2:c.1735T>C	p.Ser579Pro	p.S579P	ENST00000328111	NM_006892.3	579	Tca/Cca																																																																															
EP300	2033	MSKCC	GRCh37	22	41533736	41533736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1046073854		P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	180	514	3	ENST00000263253.7:c.1702C>T	p.Arg568Trp	p.R568W	ENST00000263253	NM_001429.3	568	Cgg/Tgg																																																																															
EP300	2033	MSKCC	GRCh37	22	41545125	41545125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	224	532	1	ENST00000263253.7:c.2325G>T	p.Met775Ile	p.M775I	ENST00000263253	NM_001429.3	775	atG/atT																																																																															
RAF1	5894	MSKCC	GRCh37	3	12660157	12660157	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	203	485	0	ENST00000251849.4:c.64T>C	p.Phe22Leu	p.F22L	ENST00000251849	NM_002880.3	22	Ttt/Ctt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37089156	37089156	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs63751214		P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	139	393	0	ENST00000231790.2:c.1878C>A	p.Phe626Leu	p.F626L	ENST00000231790	NM_000249.3	626	ttC/ttA																																																																															
MYD88	4615	MSKCC	GRCh37	3	38181368	38181368	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	99	287	0	ENST00000396334.3:c.381A>C	p.Gln127His	p.Q127H	ENST00000396334	NM_002468.4	127	caA/caC																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637656	52637656	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	87	478	1	ENST00000394830.3:c.2660T>G	p.Leu887Arg	p.L887R	ENST00000394830	NM_018313.4	887	cTt/cGt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52662993	52662993	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	138	347	0	ENST00000394830.3:c.1360T>G	p.Leu454Val	p.L454V	ENST00000394830	NM_018313.4	454	Tta/Gta																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72891527	72891527	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	175	369	0	ENST00000325599.8:c.235G>T	p.Glu79Ter	p.E79*	ENST00000325599	NM_018130.2	79	Gaa/Taa																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114268	73114268	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	85	270	0	ENST00000356692.5:c.904G>T	p.Glu302Ter	p.E302*	ENST00000356692		302	Gaa/Taa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134977952	134977952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	187	518	0	ENST00000398015.3:c.2945C>T	p.Ala982Val	p.A982V	ENST00000398015	NM_004441.4	982	gCa/gTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916806	178916806	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	170	490	0	ENST00000263967.3:c.193G>T	p.Glu65Ter	p.E65*	ENST00000263967	NM_006218.2	65	Gaa/Taa																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182681707	182681707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	188	414	1	ENST00000292782.4:c.351C>A	p.Phe117Leu	p.F117L	ENST00000292782	NM_020640.2	117	ttC/ttA																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750396	41750396	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	67	386	0	ENST00000226382.2:c.232T>C	p.Tyr78His	p.Y78H	ENST00000226382	NM_003924.3	78	Tac/Cac																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133874	55133874	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	149	362	0	ENST00000257290.5:c.1087A>C	p.Ile363Leu	p.I363L	ENST00000257290	NM_006206.4	363	Atc/Ctc																																																																															
KIT	3815	MSKCC	GRCh37	4	55589787	55589787	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	165	397	0	ENST00000288135.5:c.1269T>G	p.Asn423Lys	p.N423K	ENST00000288135	NM_000222.2	423	aaT/aaG																																																																															
KDR	3791	MSKCC	GRCh37	4	55955939	55955939	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	148	458	0	ENST00000263923.4:c.3223G>T	p.Glu1075Ter	p.E1075*	ENST00000263923	NM_002253.2	1075	Gaa/Taa																																																																															
KDR	3791	MSKCC	GRCh37	4	55970853	55970853	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	138	414	0	ENST00000263923.4:c.1944G>T	p.Lys648Asn	p.K648N	ENST00000263923	NM_002253.2	648	aaG/aaT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467554	66467554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	41	342	0	ENST00000273854.3:c.715C>A	p.His239Asn	p.H239N	ENST00000273854	NM_004439.5	239	Cac/Aac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557993	187557993	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	150	342	0	ENST00000441802.2:c.3718G>T	p.Asp1240Tyr	p.D1240Y	ENST00000441802	NM_005245.3	1240	Gac/Tac																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168544	56168544	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	114	274	0	ENST00000399503.3:c.1500C>A	p.Phe500Leu	p.F500L	ENST00000399503	NM_005921.1	500	ttC/ttA																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178602	56178602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	116	257	0	ENST00000399503.3:c.3575C>T	p.Ala1192Val	p.A1192V	ENST00000399503	NM_005921.1	1192	gCc/gTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179454	56179454	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	102	235	0	ENST00000399503.3:c.3767C>A	p.Ser1256Tyr	p.S1256Y	ENST00000399503	NM_005921.1	1256	tCt/tAt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86670674	86670674	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	79	266	0	ENST00000274376.6:c.1952T>C	p.Ile651Thr	p.I651T	ENST00000274376	NM_002890.2	651	aTc/aCc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117715384	117715384	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	34	383	0	ENST00000368508.3:c.1105A>C	p.Ile369Leu	p.I369L	ENST00000368508	NM_002944.2	369	Att/Ctt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729969	41729969	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	54	565	0	ENST00000242208.4:c.560A>T	p.Asp187Val	p.D187V	ENST00000242208	NM_002192.2	187	gAc/gTc																																																																															
HGF	3082	MSKCC	GRCh37	7	81334801	81334801	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	130	408	0	ENST00000222390.5:c.1915A>G	p.Asn639Asp	p.N639D	ENST00000222390	NM_000601.4	639	Aat/Gat																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523588	106523588	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	95	260	0	ENST00000359195.3:c.2740A>T	p.Lys914Ter	p.K914*	ENST00000359195	NM_002649.2	914	Aaa/Taa																																																																															
SMO	6608	MSKCC	GRCh37	7	128850882	128850882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	81	651	0	ENST00000249373.3:c.1729C>T	p.His577Tyr	p.H577Y	ENST00000249373	NM_005631.4	577	Cac/Tac																																																																															
SMO	6608	MSKCC	GRCh37	7	128851602	128851602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	169	597	1	ENST00000249373.3:c.1927G>A	p.Ala643Thr	p.A643T	ENST00000249373	NM_005631.4	643	Gca/Aca																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38173052	38173052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	117	391	0	ENST00000317025.8:c.1997G>A	p.Gly666Glu	p.G666E	ENST00000317025	NM_023034.1	666	gGa/gAa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70967620	70967620	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	136	454	0	ENST00000276594.2:c.1403A>C	p.Lys468Thr	p.K468T	ENST00000276594	NM_024504.3	468	aAa/aCa																																																																															
CD274	29126	MSKCC	GRCh37	9	5463112	5463112	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	83	255	0	ENST00000381577.3:c.673G>T	p.Val225Phe	p.V225F	ENST00000381577	NM_014143.3	225	Gtc/Ttc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44732866	44732866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	88	456	0	ENST00000377967.4:c.69G>T	p.Lys23Asn	p.K23N	ENST00000377967	NM_021140.2	23	aaG/aaT																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44921910	44921910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	287	395	0	ENST00000377967.4:c.1444G>A	p.Ala482Thr	p.A482T	ENST00000377967	NM_021140.2	482	Gca/Aca																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44928966	44928966	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	196	451	0	ENST00000377967.4:c.2066C>A	p.Ser689Ter	p.S689*	ENST00000377967	NM_021140.2	689	tCa/tAa																																																																															
REL	5966	MSKCC	GRCh37	2	61147520	61147520	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0051646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	16	33	0	ENST00000295025.8:c.925G>T	p.Glu309Ter	p.E309*	ENST00000295025	NM_002908.2	309	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	208	424	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021817	71021817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	130	250	1	ENST00000318789.4:c.1541G>A	p.Arg514His	p.R514H	ENST00000318789	NM_032682.5	514	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575132	48575132	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	67	368	1	ENST00000342988.3:c.326T>C	p.Leu109Pro	p.L109P	ENST00000342988	NM_005359.5	109	cTa/cCa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105727	27105727	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	183	413	2	ENST00000324856.7:c.5338G>T	p.Glu1780Ter	p.E1780*	ENST00000324856	NM_006015.4	1780	Gaa/Taa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266088	41266111	+	inframe_deletion	In_Frame_Del	DEL	TCTTACCTGGACTCTGGAATCCAT	TCTTACCTGGACTCTGGAATCCAT	-			P-0051647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	133	337	1	ENST00000349496.5:c.88_111del	p.Tyr30_Ser37del	p.Y30_S37del	ENST00000349496	NM_001904.3	29	TCTTACCTGGACTCTGGAATCCAT/-																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221123	5221123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	230	731	0	ENST00000357368.4:c.3343G>A	p.Ala1115Thr	p.A1115T	ENST00000357368	NM_002850.3	1115	Gcc/Acc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520009		P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	80	445	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509637	106509637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	151	514	0	ENST00000359195.3:c.1631G>A	p.Arg544Gln	p.R544Q	ENST00000359195	NM_002649.2	544	cGa/cAa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911534	101911534	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111426349		P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	18	394	0	ENST00000374994.4:c.1459C>T	p.Arg487Trp	p.R487W	ENST00000374994	NM_004612.2	487	Cgg/Tgg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88726669	88726669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	121	470	0	ENST00000360948.2:c.375G>T	p.Lys125Asn	p.K125N	ENST00000360948	NM_001012338.2	125	aaG/aaT																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112891035	112891035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	115	318	0	ENST00000351677.2:c.369G>T	p.Glu123Asp	p.E123D	ENST00000351677	NM_002834.3	123	gaG/gaT																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171607	36171607	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	20	298	0	ENST00000300305.3:c.958C>T	p.Arg320Ter	p.R320*	ENST00000300305		320	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	89	326	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508805	106508805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	123	533	0	ENST00000359195.3:c.799G>A	p.Glu267Lys	p.E267K	ENST00000359195	NM_002649.2	267	Gaa/Aaa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212589874	212589874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	169	517	0	ENST00000342788.4:c.668G>A	p.Gly223Glu	p.G223E	ENST00000342788	NM_005235.2	223	gGa/gAa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47710037	47710037	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	54	301	0	ENST00000233146.2:c.2754G>T	p.Lys918Asn	p.K918N	ENST00000233146	NM_000251.2	918	aaG/aaT																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153259071	153259071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	67	203	0	ENST00000281708.4:c.744G>T	p.Glu248Asp	p.E248D	ENST00000281708	NM_033632.3	248	gaG/gaT																																																																															
MET	4233	MSKCC	GRCh37	7	116418997	116418997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	75	266	0	ENST00000397752.3:c.3508C>T	p.Arg1170Ter	p.R1170*	ENST00000397752	NM_000245.2	1170	Cga/Tga																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673064	30673064	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144657716		P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	190	628	3	ENST00000376406.3:c.3896G>A	p.Arg1299Gln	p.R1299Q	ENST00000376406	NM_014641.2	1299	cGa/cAa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561352	9561352	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773981325		P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	44	438	1	ENST00000353224.5:c.430G>A	p.Glu144Lys	p.E144K	ENST00000353224	NM_177990.2	144	Gaa/Aaa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495034	56495034	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150312718		P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	181	654	1	ENST00000267101.3:c.3391G>A	p.Ala1131Thr	p.A1131T	ENST00000267101	NM_001982.3	1131	Gcc/Acc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095836	178095836	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1328262363		P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	131	494	1	ENST00000397062.3:c.1495C>T	p.Arg499Trp	p.R499W	ENST00000397062	NM_006164.4	499	Cgg/Tgg																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858261	27858261	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	170	729	0	ENST00000359303.2:c.310C>A	p.Leu104Ile	p.L104I	ENST00000359303	NM_003535.2	104	Ctc/Atc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746018	162746018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	86	387	0	ENST00000367921.3:c.2141G>A	p.Arg714Gln	p.R714Q	ENST00000367921	NM_006182.2	714	cGa/cAa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023019	150023019	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	148	592	0	ENST00000253339.5:c.244C>T	p.Arg82Ter	p.R82*	ENST00000253339		82	Cga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521666	89521666	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	96	494	0	ENST00000336596.2:c.2743A>G	p.Thr915Ala	p.T915A	ENST00000336596	NM_005233.5	915	Aca/Gca																																																																															
KDR	3791	MSKCC	GRCh37	4	55968610	55968610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	132	575	1	ENST00000263923.4:c.2053G>A	p.Glu685Lys	p.E685K	ENST00000263923	NM_002253.2	685	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68857307	68857307	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	22	323	0	ENST00000261769.5:c.1942G>T	p.Glu648Ter	p.E648*	ENST00000261769	NM_004360.3	648	Gaa/Taa																																																																															
MET	4233	MSKCC	GRCh37	7	116422057	116422057	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	195	354	0	ENST00000397752.3:c.3538G>T	p.Asp1180Tyr	p.D1180Y	ENST00000397752	NM_000245.2	1180	Gat/Tat																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103510743	103510743	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	24	443	0	ENST00000355739.4:c.647G>T	p.Arg216Ile	p.R216I	ENST00000355739	NM_000123.3	216	aGa/aTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40727098	40727098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	137	642	1	ENST00000373198.4:c.3866C>T	p.Ser1289Phe	p.S1289F	ENST00000373198	NM_133170.3	1289	tCc/tTc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560913	9560913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	47	491	0	ENST00000353224.5:c.869C>T	p.Ser290Leu	p.S290L	ENST00000353224	NM_177990.2	290	tCg/tTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508955	106508955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	129	563	0	ENST00000359195.3:c.949G>A	p.Glu317Lys	p.E317K	ENST00000359195	NM_002649.2	317	Gag/Aag																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228613019	228613019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	21	416	1	ENST00000366696.1:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000366696	NM_003493.2	3	cGa/cAa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243675668	243675668	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	74	317	0	ENST00000263826.5:c.1312G>T	p.Glu438Ter	p.E438*	ENST00000263826	NM_005465.4	438	Gaa/Taa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198263220	198263220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	87	345	0	ENST00000335508.6:c.3099G>T	p.Glu1033Asp	p.E1033D	ENST00000335508	NM_012433.2	1033	gaG/gaT																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	62	217	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637690	52637690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	147	503	0	ENST00000394830.3:c.2626C>T	p.Arg876Cys	p.R876C	ENST00000394830	NM_018313.4	876	Cgt/Tgt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197845	66197845	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	53	241	1	ENST00000273854.3:c.2854G>T	p.Val952Leu	p.V952L	ENST00000273854	NM_004439.5	952	Gta/Tta																																																																															
APC	324	MSKCC	GRCh37	5	112176008	112176008	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	78	260	0	ENST00000257430.4:c.4717G>T	p.Glu1573Ter	p.E1573*	ENST00000257430	NM_000038.5	1573	Gaa/Taa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81972440	81972440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	147	506	0	ENST00000359376.3:c.3233G>A	p.Arg1078Gln	p.R1078Q	ENST00000359376	NM_002661.3	1078	cGa/cAa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096009	11096009	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	211	777	0	ENST00000344626.4:c.283G>T	p.Gly95Ter	p.G95*	ENST00000344626	NM_003072.3	95	Gga/Tga																																																																															
KDR	3791	MSKCC	GRCh37	4	55948135	55948135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	112	467	0	ENST00000263923.4:c.3836C>A	p.Ser1279Tyr	p.S1279Y	ENST00000263923	NM_002253.2	1279	tCt/tAt																																																																															
BARD1	580	MSKCC	GRCh37	2	215609807	215609807	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	40	351	0	ENST00000260947.4:c.1887G>A	p.Trp629Ter	p.W629*	ENST00000260947	NM_000465.2	629	tgG/tgA																																																																															
B2M	567	MSKCC	GRCh37	15	45003767	45003767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	141	518	1	ENST00000558401.1:c.23C>A	p.Ala8Asp	p.A8D	ENST00000558401	NM_004048.2	8	gCt/gAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212537975	212537975	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267599192		P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	104	354	1	ENST00000342788.4:c.1630C>T	p.Arg544Trp	p.R544W	ENST00000342788	NM_005235.2	544	Cgg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140501350	140501350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	74	275	0	ENST00000288602.6:c.722C>T	p.Thr241Met	p.T241M	ENST00000288602	NM_004333.4	241	aCg/aTg																																																																															
EED	8726	MSKCC	GRCh37	11	85989557	85989557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	84	365	1	ENST00000263360.6:c.1316G>A	p.Arg439Gln	p.R439Q	ENST00000263360	NM_003797.3	439	cGa/cAa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508517	106508517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	67	357	0	ENST00000359195.3:c.511G>A	p.Asp171Asn	p.D171N	ENST00000359195	NM_002649.2	171	Gat/Aat																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740668	58740668	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	151	508	0	ENST00000305921.3:c.1573G>T	p.Glu525Ter	p.E525*	ENST00000305921	NM_003620.3	525	Gaa/Taa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2105507	2105507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	192	520	1	ENST00000219476.3:c.586G>A	p.Ala196Thr	p.A196T	ENST00000219476	NM_000548.3	196	Gca/Aca																																																																															
CASP8	841	MSKCC	GRCh37	2	202151289	202151289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	94	382	0	ENST00000358485.4:c.1589G>T	p.Arg530Ile	p.R530I	ENST00000358485	NM_001080125.1	530	aGa/aTa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86659246	86659246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	65	243	0	ENST00000274376.6:c.1535G>A	p.Arg512Gln	p.R512Q	ENST00000274376	NM_002890.2	512	cGa/cAa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435088	18435088	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	96	371	0	ENST00000266497.5:c.73C>A	p.Leu25Ile	p.L25I	ENST00000266497		25	Ctc/Atc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133894	55133894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	95	341	0	ENST00000257290.5:c.1107G>T	p.Lys369Asn	p.K369N	ENST00000257290	NM_006206.4	369	aaG/aaT																																																																															
POLE	5426	MSKCC	GRCh37	12	133249857	133249857	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	112	432	0	ENST00000320574.5:c.1366G>C	p.Ala456Pro	p.A456P	ENST00000320574	NM_006231.2	456	Gcc/Ccc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748583	40748583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	113	435	0	ENST00000373198.4:c.2933C>T	p.Ala978Val	p.A978V	ENST00000373198	NM_133170.3	978	gCg/gTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582935	95582935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	60	389	0	ENST00000343455.3:c.1607G>A	p.Arg536His	p.R536H	ENST00000343455	NM_177438.2	536	cGt/cAt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965631	25965631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	117	608	0	ENST00000435504.4:c.3575C>A	p.Ser1192Tyr	p.S1192Y	ENST00000435504		1192	tCt/tAt																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749490	41749490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	133	583	1	ENST00000226382.2:c.305G>A	p.Arg102His	p.R102H	ENST00000226382	NM_003924.3	102	cGc/cAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907420	32907421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1253401667		P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	21	309	2	ENST00000380152.3:c.1813dup	p.Ile605AsnfsTer11	p.I605Nfs*11	ENST00000380152		602	gga/ggAa																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42839719	42839719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	218	698	1	ENST00000398585.3:c.1520G>T	p.Arg507Ile	p.R507I	ENST00000398585	NM_001135099.1	507	aGa/aTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484270	8484270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867884876		P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	177	497	0	ENST00000356435.5:c.3262C>T	p.Arg1088Cys	p.R1088C	ENST00000356435		1088	Cgt/Tgt																																																																															
PGR	5241	MSKCC	GRCh37	11	100933424	100933424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	22	401	0	ENST00000325455.5:c.1966C>A	p.Leu656Ile	p.L656I	ENST00000325455	NM_001202474.3	656	Ctc/Atc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472592	88472592	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	24	473	0	ENST00000360948.2:c.1963C>A	p.Gln655Lys	p.Q655K	ENST00000360948	NM_001012338.2	655	Caa/Aaa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967900	93967900	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	147	543	0	ENST00000369303.4:c.2027G>T	p.Arg676Met	p.R676M	ENST00000369303	NM_004440.3	676	aGg/aTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912131	114912131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	152	528	0	ENST00000543371.1:c.1201G>A	p.Glu401Lys	p.E401K	ENST00000543371	NM_001198531.1	401	Gag/Aag																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271369	26271369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	29	692	0	ENST00000305910.3:c.244G>T	p.Asp82Tyr	p.D82Y	ENST00000305910	NM_003534.2	82	Gat/Tat																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612398	1612398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	245	786	0	ENST00000344749.5:c.1621G>T	p.Asp541Tyr	p.D541Y	ENST00000344749	NM_001136139.2	541	Gac/Tac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221756	36221756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	260	817	1	ENST00000222270.7:c.5425G>A	p.Ala1809Thr	p.A1809T	ENST00000222270	NM_014727.1	1809	Gcc/Acc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129934	55129934	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	151	607	0	ENST00000257290.5:c.468G>T	p.Glu156Asp	p.E156D	ENST00000257290	NM_006206.4	156	gaG/gaT																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992764	68992764	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	63	566	0	ENST00000288368.4:c.1729C>T	p.Arg577Ter	p.R577*	ENST00000288368	NM_024870.2	577	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3832852	3832852	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	131	507	0	ENST00000262367.5:c.1406C>A	p.Ser469Tyr	p.S469Y	ENST00000262367	NM_004380.2	469	tCt/tAt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659851	227659851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	97	313	0	ENST00000305123.5:c.3604C>T	p.Pro1202Ser	p.P1202S	ENST00000305123	NM_005544.2	1202	Ccc/Tcc																																																																															
APC	324	MSKCC	GRCh37	5	112175825	112175825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	71	278	0	ENST00000257430.4:c.4534G>A	p.Asp1512Asn	p.D1512N	ENST00000257430	NM_000038.5	1512	Gat/Aat																																																																															
FLT1	2321	MSKCC	GRCh37	13	28885788	28885788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	38	507	0	ENST00000282397.4:c.3574G>T	p.Asp1192Tyr	p.D1192Y	ENST00000282397	NM_002019.4	1192	Gac/Tac																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482577	56482577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	209	630	0	ENST00000267101.3:c.1034C>T	p.Ser345Leu	p.S345L	ENST00000267101	NM_001982.3	345	tCg/tTg																																																																															
BLM	641	MSKCC	GRCh37	15	91333930	91333930	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	155	574	1	ENST00000355112.3:c.2875C>T	p.Arg959Ter	p.R959*	ENST00000355112	NM_000057.2	959	Cga/Tga																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46262906	46262906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	136	444	0	ENST00000371998.3:c.1079G>A	p.Arg360Gln	p.R360Q	ENST00000371998		360	cGa/cAa																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134681	41134681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	105	407	0	ENST00000379561.5:c.947G>A	p.Arg316Gln	p.R316Q	ENST00000379561	NM_002015.3	316	cGa/cAa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117859879	117859879	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	32	295	0	ENST00000297338.2:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000297338	NM_006265.2	586	Cga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467869	66467869	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	60	327	1	ENST00000273854.3:c.400C>A	p.Leu134Met	p.L134M	ENST00000273854	NM_004439.5	134	Ctg/Atg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864365	162864365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	86	420	0	ENST00000366898.1:c.148C>A	p.Leu50Met	p.L50M	ENST00000366898	NM_004562.2	50	Ctg/Atg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68934278	68934278	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	106	429	0	ENST00000288368.4:c.344A>C	p.Lys115Thr	p.K115T	ENST00000288368	NM_024870.2	115	aAg/aCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434141	49434141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	203	767	1	ENST00000301067.7:c.7412G>A	p.Arg2471Gln	p.R2471Q	ENST00000301067	NM_003482.3	2471	cGa/cAa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16042482	16042482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	77	398	3	ENST00000268712.3:c.1192C>T	p.Arg398Trp	p.R398W	ENST00000268712	NM_006311.3	398	Cgg/Tgg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39237759	39237759	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	102	348	0	ENST00000402219.2:c.2476C>T	p.Arg826Ter	p.R826*	ENST00000402219	NM_005633.3	826	Cga/Tga																																																																															
PARK2	5071	MSKCC	GRCh37	6	162622278	162622278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	17	397	0	ENST00000366898.1:c.419G>T	p.Arg140Ile	p.R140I	ENST00000366898	NM_004562.2	140	aGa/aTa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244163	5244163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	193	728	0	ENST00000357368.4:c.1319C>T	p.Ala440Val	p.A440V	ENST00000357368	NM_002850.3	440	gCg/gTg																																																																															
SESN1	27244	MSKCC	GRCh37	6	109322511	109322511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	146	505	0	ENST00000436639.2:c.526C>T	p.Arg176Cys	p.R176C	ENST00000436639	NM_014454.2	176	Cgt/Tgt																																																																															
FLCN	201163	MSKCC	GRCh37	17	17122412	17122412	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	136	686	0	ENST00000285071.4:c.983A>C	p.Glu328Ala	p.E328A	ENST00000285071	NM_144997.5	328	gAg/gCg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860908	151860908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	65	324	1	ENST00000262189.6:c.9754C>T	p.Arg3252Cys	p.R3252C	ENST00000262189	NM_170606.2	3252	Cgt/Tgt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729635	162729635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	148	529	0	ENST00000367921.3:c.721G>A	p.Asp241Asn	p.D241N	ENST00000367921	NM_006182.2	241	Gat/Aat																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953931	17953931	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	165	881	0	ENST00000458235.1:c.471G>T	p.Lys157Asn	p.K157N	ENST00000458235	NM_000215.3	157	aaG/aaT																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18719961	18719961	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	106	459	0	ENST00000266497.5:c.3858G>T	p.Gln1286His	p.Q1286H	ENST00000266497		1286	caG/caT																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250398	10250398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	174	592	0	ENST00000340748.4:c.3854G>A	p.Arg1285His	p.R1285H	ENST00000340748		1285	cGc/cAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435082	18435082	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	93	350	0	ENST00000266497.5:c.67G>T	p.Glu23Ter	p.E23*	ENST00000266497		23	Gaa/Taa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445029	89445029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	58	394	0	ENST00000336596.2:c.1349G>T	p.Arg450Ile	p.R450I	ENST00000336596	NM_005233.5	450	aGa/aTa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18491459	18491459	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs200273120		P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	19	357	0	ENST00000266497.5:c.1372C>A	p.Leu458Ile	p.L458I	ENST00000266497		458	Cta/Ata																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027887	48027887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	103	311	0	ENST00000234420.5:c.2765G>A	p.Arg922Gln	p.R922Q	ENST00000234420	NM_000179.2	922	cGa/cAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162701	47162701	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	80	490	0	ENST00000409792.3:c.3425A>G	p.Glu1142Gly	p.E1142G	ENST00000409792	NM_014159.6	1142	gAa/gGa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298125	15298125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	227	794	1	ENST00000263388.2:c.1631G>A	p.Arg544His	p.R544H	ENST00000263388	NM_000435.2	544	cGc/cAc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162742010	162742010	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	118	422	0	ENST00000367921.3:c.1701G>T	p.Glu567Asp	p.E567D	ENST00000367921	NM_006182.2	567	gaG/gaT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510219	187510219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	173	484	0	ENST00000441802.2:c.13294G>A	p.Glu4432Lys	p.E4432K	ENST00000441802	NM_005245.3	4432	Gaa/Aaa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31019136	31019136	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139716375		P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	46	448	0	ENST00000375687.4:c.731G>A	p.Arg244His	p.R244H	ENST00000375687	NM_015338.5	244	cGc/cAc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814756	139814756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	221	811	0	ENST00000247668.2:c.749C>T	p.Ser250Leu	p.S250L	ENST00000247668	NM_021138.3	250	tCg/tTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271769	15271769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	261	908	0	ENST00000263388.2:c.6670G>A	p.Ala2224Thr	p.A2224T	ENST00000263388	NM_000435.2	2224	Gct/Act																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811747	102811747	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	180	597	0	ENST00000307046.8:c.437C>A	p.Ser146Tyr	p.S146Y	ENST00000307046	NM_001111285.1	146	tCt/tAt																																																																															
CDK8	1024	MSKCC	GRCh37	13	26928012	26928012	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	20	404	0	ENST00000381527.3:c.451G>T	p.Asp151Tyr	p.D151Y	ENST00000381527	NM_001260.1	151	Gat/Tat																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32185039	32185039	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	161	583	0	ENST00000375023.3:c.1629C>A	p.Phe543Leu	p.F543L	ENST00000375023	NM_004557.3	543	ttC/ttA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711913	89711913	+	stop_gained	Nonsense_Mutation	SNP	T	T	G	rs878853012		P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	71	543	0	ENST00000371953.3:c.531T>G	p.Tyr177Ter	p.Y177*	ENST00000371953	NM_000314.4	177	taT/taG																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997696	149997696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	65	324	0	ENST00000253339.5:c.2771G>A	p.Arg924Gln	p.R924Q	ENST00000253339		924	cGa/cAa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222973	5222973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	151	424	1	ENST00000357368.4:c.2830G>A	p.Gly944Arg	p.G944R	ENST00000357368	NM_002850.3	944	Ggg/Agg																																																																															
ATM	472	MSKCC	GRCh37	11	108216486	108216486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	14	256	0	ENST00000278616.4:c.8435C>A	p.Ser2812Tyr	p.S2812Y	ENST00000278616	NM_000051.3	2812	tCt/tAt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410597	63410597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	178	406	1	ENST00000330258.3:c.2570G>A	p.Arg857Gln	p.R857Q	ENST00000330258	NM_152424.3	857	cGa/cAa																																																																															
RET	5979	MSKCC	GRCh37	10	43607663	43607663	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	52	956	0	ENST00000355710.3:c.1639G>T	p.Asp547Tyr	p.D547Y	ENST00000355710	NM_020975.4	547	Gat/Tat																																																																															
YES1	7525	MSKCC	GRCh37	18	736915	736915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	143	456	0	ENST00000314574.4:c.1184G>A	p.Arg395Gln	p.R395Q	ENST00000314574	NM_005433.3	395	cGa/cAa																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119720928	119720928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	101	474	0	ENST00000316626.5:c.247G>A	p.Ala83Thr	p.A83T	ENST00000316626		83	Gcc/Acc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62326261	62326261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	261	999	0	ENST00000508582.2:c.3349G>A	p.Asp1117Asn	p.D1117N	ENST00000508582		1117	Gac/Aac																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670256	134670256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	124	465	0	ENST00000398015.3:c.167G>A	p.Arg56His	p.R56H	ENST00000398015	NM_004441.4	56	cGc/cAc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739368	46739368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	172	515	3	ENST00000371975.4:c.1559C>T	p.Ser520Leu	p.S520L	ENST00000371975	NM_003579.3	520	tCg/tTg																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182681676	182681676	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	89	388	0	ENST00000292782.4:c.382G>T	p.Glu128Ter	p.E128*	ENST00000292782	NM_020640.2	128	Gaa/Taa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198283248	198283248	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	122	462	0	ENST00000335508.6:c.480C>A	p.His160Gln	p.H160Q	ENST00000335508	NM_012433.2	160	caC/caA																																																																															
FLT3	2322	MSKCC	GRCh37	13	28597540	28597540	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	140	570	0	ENST00000241453.7:c.2365C>A	p.Leu789Ile	p.L789I	ENST00000241453	NM_004119.2	789	Ctt/Att																																																																															
AR	367	MSKCC	GRCh37	X	66765620	66765620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	28	463	0	ENST00000374690.3:c.632C>T	p.Ala211Val	p.A211V	ENST00000374690	NM_000044.3	211	gCg/gTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589609	67589609	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	50	311	0	ENST00000274335.5:c.1372G>T	p.Glu458Ter	p.E458*	ENST00000274335		458	Gaa/Taa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163909	152163909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	24	481	0	ENST00000206249.3:c.630G>T	p.Lys210Asn	p.K210N	ENST00000206249	NM_000125.3	210	aaG/aaT																																																																															
BIRC3	330	MSKCC	GRCh37	11	102206852	102206852	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	97	399	1	ENST00000263464.3:c.1480G>T	p.Glu494Ter	p.E494*	ENST00000263464	NM_001165.4	494	Gaa/Taa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906894	32906894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	90	469	0	ENST00000380152.3:c.1279G>T	p.Asp427Tyr	p.D427Y	ENST00000380152		427	Gac/Tac																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740632	58740632	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs202221678		P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	137	538	0	ENST00000305921.3:c.1537T>G	p.Leu513Val	p.L513V	ENST00000305921	NM_003620.3	513	Ttg/Gtg																																																																															
AXL	558	MSKCC	GRCh37	19	41726601	41726601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	213	701	0	ENST00000301178.4:c.146G>A	p.Gly49Glu	p.G49E	ENST00000301178	NM_021913.4	49	gGa/gAa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748837	43748837	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	48	672	1	ENST00000382044.4:c.1969G>T	p.Glu657Ter	p.E657*	ENST00000382044	NM_001141980.1	657	Gaa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132713	152132713	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	92	170	0	ENST00000262189.6:c.159G>T	p.Lys53Asn	p.K53N	ENST00000262189	NM_170606.2	53	aaG/aaT																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49280961	49280961	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	107	411	0	ENST00000282018.3:c.8G>T	p.Arg3Ile	p.R3I	ENST00000282018	NM_020377.2	3	aGa/aTa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	142949972	142949972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	18	506	1	ENST00000262992.4:c.2738G>T	p.Arg913Ile	p.R913I	ENST00000262992	NM_001101669.1	913	aGa/aTa																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374942	149374942	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	429	649	1	ENST00000360632.3:c.152C>A	p.Ser51Tyr	p.S51Y	ENST00000360632	NM_015472.4	51	tCt/tAt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28578239	28578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	138	580	0	ENST00000241453.7:c.2932G>T	p.Glu978Ter	p.E978*	ENST00000241453	NM_004119.2	978	Gag/Tag																																																																															
FLT3	2322	MSKCC	GRCh37	13	28609667	28609667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	153	562	0	ENST00000241453.7:c.1562G>A	p.Gly521Asp	p.G521D	ENST00000241453	NM_004119.2	521	gGc/gAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70343060	70343060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	184	283	0	ENST00000374080.3:c.1601C>T	p.Ala534Val	p.A534V	ENST00000374080		534	gCg/gTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866112	37866112	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	183	688	0	ENST00000269571.5:c.621G>T	p.Glu207Asp	p.E207D	ENST00000269571		207	gaG/gaT																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032475	12032475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	61	340	0	ENST00000353533.5:c.911G>A	p.Arg304Gln	p.R304Q	ENST00000353533	NM_003010.3	304	cGa/cAa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509768	106509768	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146487441		P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	100	555	0	ENST00000359195.3:c.1762G>A	p.Ala588Thr	p.A588T	ENST00000359195	NM_002649.2	588	Gca/Aca																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52663052	52663052	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	12	221	0	ENST00000394830.3:c.1302-1G>T		p.X434_splice	ENST00000394830	NM_018313.4	434																																																																																
MSH6	2956	MSKCC	GRCh37	2	48028161	48028161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	92	331	0	ENST00000234420.5:c.3039G>T	p.Lys1013Asn	p.K1013N	ENST00000234420	NM_000179.2	1013	aaG/aaT																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641559	18641559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	55	334	0	ENST00000266497.5:c.2558G>T	p.Arg853Ile	p.R853I	ENST00000266497		853	aGa/aTa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69069589	69069589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	78	518	0	ENST00000288368.4:c.4264G>T	p.Asp1422Tyr	p.D1422Y	ENST00000288368	NM_024870.2	1422	Gac/Tac																																																																															
PREX2	80243	MSKCC	GRCh37	8	69028074	69028074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	126	552	1	ENST00000288368.4:c.3233G>A	p.Gly1078Glu	p.G1078E	ENST00000288368	NM_024870.2	1078	gGa/gAa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117650561	117650561	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	116	562	0	ENST00000368508.3:c.5297A>C	p.Lys1766Thr	p.K1766T	ENST00000368508	NM_002944.2	1766	aAa/aCa																																																																															
PIM1	5292	MSKCC	GRCh37	6	37141769	37141769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	149	584	0	ENST00000373509.5:c.844G>A	p.Glu282Lys	p.E282K	ENST00000373509	NM_002648.3	282	Gaa/Aaa																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8075442	8075442	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	77	324	0	ENST00000377482.5:c.128A>C	p.Asn43Thr	p.N43T	ENST00000377482	NM_018948.3	43	aAc/aCc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781609	9781609	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	86	727	0	ENST00000377346.4:c.1919A>G	p.Asn640Ser	p.N640S	ENST00000377346	NM_005026.3	640	aAc/aGc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16237749	16237749	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	140	561	0	ENST00000375759.3:c.1196A>C	p.Lys399Thr	p.K399T	ENST00000375759	NM_015001.2	399	aAa/aCa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255154	16255154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	23	423	0	ENST00000375759.3:c.2419C>T	p.Arg807Cys	p.R807C	ENST00000375759	NM_015001.2	807	Cgc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255394	16255394	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	143	531	0	ENST00000375759.3:c.2659G>T	p.Glu887Ter	p.E887*	ENST00000375759	NM_015001.2	887	Gag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257170	16257170	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	120	489	0	ENST00000375759.3:c.4435G>T	p.Asp1479Tyr	p.D1479Y	ENST00000375759	NM_015001.2	1479	Gat/Tat																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257226	16257226	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	123	547	0	ENST00000375759.3:c.4491G>T	p.Lys1497Asn	p.K1497N	ENST00000375759	NM_015001.2	1497	aaG/aaT																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257309	16257309	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	138	589	0	ENST00000375759.3:c.4574T>G	p.Leu1525Trp	p.L1525W	ENST00000375759	NM_015001.2	1525	tTg/tGg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258210	16258210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	191	593	0	ENST00000375759.3:c.5475G>T	p.Lys1825Asn	p.K1825N	ENST00000375759	NM_015001.2	1825	aaG/aaT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106487	27106487	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	175	690	0	ENST00000324856.7:c.6098A>C	p.Lys2033Thr	p.K2033T	ENST00000324856	NM_006015.4	2033	aAg/aCg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78428466	78428466	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	100	387	0	ENST00000370768.2:c.1333G>T	p.Glu445Ter	p.E445*	ENST00000370768	NM_003902.3	445	Gaa/Taa																																																																															
BCL10	8915	MSKCC	GRCh37	1	85736317	85736317	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	79	253	0	ENST00000370580.1:c.330A>C	p.Lys110Asn	p.K110N	ENST00000370580	NM_003921.4	110	aaA/aaC																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462132	120462132	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	187	696	0	ENST00000256646.2:c.5584T>G	p.Leu1862Val	p.L1862V	ENST00000256646	NM_024408.3	1862	Ttg/Gtg																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551467	150551467	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	60	851	1	ENST00000369026.2:c.540G>T	p.Glu180Asp	p.E180D	ENST00000369026	NM_021960.4	180	gaG/gaT																																																																															
NUF2	83540	MSKCC	GRCh37	1	163297346	163297346	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	72	395	0	ENST00000271452.3:c.192T>G	p.Phe64Leu	p.F64L	ENST00000271452	NM_145697.2	64	ttT/ttG																																																																															
CDC73	79577	MSKCC	GRCh37	1	193110982	193110982	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	32	175	0	ENST00000367435.3:c.515C>A	p.Ser172Tyr	p.S172Y	ENST00000367435	NM_024529.4	172	tCt/tAt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206653258	206653258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	238	758	0	ENST00000367120.3:c.1229C>T	p.Ala410Val	p.A410V	ENST00000367120	NM_014002.3	410	gCg/gTg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243809248	243809248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	66	492	0	ENST00000263826.5:c.376G>A	p.Asp126Asn	p.D126N	ENST00000263826	NM_005465.4	126	Gat/Aat																																																																															
AKT3	10000	MSKCC	GRCh37	1	243858997	243858997	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	47	363	0	ENST00000263826.5:c.68G>T	p.Arg23Met	p.R23M	ENST00000263826	NM_005465.4	23	aGg/aTg																																																																															
RET	5979	MSKCC	GRCh37	10	43604509	43604509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	179	658	0	ENST00000355710.3:c.1094C>T	p.Ser365Leu	p.S365L	ENST00000355710	NM_020975.4	365	tCg/tTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332343	70332343	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	144	508	0	ENST00000373644.4:c.248A>C	p.Asn83Thr	p.N83T	ENST00000373644	NM_030625.2	83	aAt/aCt																																																																															
TET1	80312	MSKCC	GRCh37	10	70406692	70406692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	104	533	0	ENST00000373644.4:c.4206C>A	p.Phe1402Leu	p.F1402L	ENST00000373644	NM_030625.2	1402	ttC/ttA																																																																															
TET1	80312	MSKCC	GRCh37	10	70450594	70450594	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	116	399	0	ENST00000373644.4:c.5434G>T	p.Val1812Leu	p.V1812L	ENST00000373644	NM_030625.2	1812	Gta/Tta																																																																															
TET1	80312	MSKCC	GRCh37	10	70451510	70451510	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	172	610	0	ENST00000373644.4:c.6350T>G	p.Val2117Gly	p.V2117G	ENST00000373644	NM_030625.2	2117	gTt/gGt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88659850	88659850	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	82	366	0	ENST00000372037.3:c.497C>A	p.Ala166Asp	p.A166D	ENST00000372037	NM_004329.2	166	gCt/gAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912113	114912113	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	146	460	0	ENST00000543371.1:c.1183G>T	p.Glu395Ter	p.E395*	ENST00000543371	NM_001198531.1	395	Gag/Tag																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123239531	123239531	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	69	841	0	ENST00000358487.5:c.2306A>G	p.Tyr769Cys	p.Y769C	ENST00000358487	NM_000141.4	769	tAc/tGc																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514286	69514286	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	192	687	0	ENST00000294312.3:c.395A>C	p.Asn132Thr	p.N132T	ENST00000294312	NM_005117.2	132	aAt/aCt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631092	69631092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	43	546	1	ENST00000334134.2:c.320C>A	p.Ala107Asp	p.A107D	ENST00000334134	NM_005247.2	107	gCt/gAt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94194137	94194137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	116	455	0	ENST00000323929.3:c.1291G>T	p.Asp431Tyr	p.D431Y	ENST00000323929	NM_005591.3	431	Gat/Tat																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94204870	94204870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	98	415	0	ENST00000323929.3:c.715G>T	p.Asp239Tyr	p.D239Y	ENST00000323929	NM_005591.3	239	Gat/Tat																																																																															
PGR	5241	MSKCC	GRCh37	11	100999583	100999583	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	53	952	0	ENST00000325455.5:c.219G>T	p.Lys73Asn	p.K73N	ENST00000325455	NM_001202474.3	73	aaG/aaT																																																																															
KDM5A	5927	MSKCC	GRCh37	12	417097	417097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	115	386	1	ENST00000399788.2:c.3453G>T	p.Lys1151Asn	p.K1151N	ENST00000399788	NM_001042603.1	1151	aaG/aaT																																																																															
ETV6	2120	MSKCC	GRCh37	12	11905393	11905393	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	94	334	0	ENST00000396373.4:c.43A>C	p.Ile15Leu	p.I15L	ENST00000396373	NM_001987.4	15	Att/Ctt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18534809	18534809	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	28	447	0	ENST00000266497.5:c.1867C>A	p.Leu623Met	p.L623M	ENST00000266497		623	Ctg/Atg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552742	18552742	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	105	526	0	ENST00000266497.5:c.2153T>C	p.Phe718Ser	p.F718S	ENST00000266497		718	tTt/tCt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18650661	18650661	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	12	368	0	ENST00000266497.5:c.2872C>A	p.Leu958Ile	p.L958I	ENST00000266497		958	Cta/Ata																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18656347	18656347	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	80	354	0	ENST00000266497.5:c.3026A>T	p.Glu1009Val	p.E1009V	ENST00000266497		1009	gAa/gTa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18762475	18762475	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	72	406	0	ENST00000266497.5:c.3971A>C	p.Lys1324Thr	p.K1324T	ENST00000266497		1324	aAg/aCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437688	49437688	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	318	839	0	ENST00000301067.7:c.5282A>C	p.Lys1761Thr	p.K1761T	ENST00000301067	NM_003482.3	1761	aAg/aCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448497	49448497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	202	665	0	ENST00000301067.7:c.214G>A	p.Gly72Arg	p.G72R	ENST00000301067	NM_003482.3	72	Ggg/Agg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487947	56487947	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	118	647	0	ENST00000267101.3:c.1678G>T	p.Glu560Ter	p.E560*	ENST00000267101	NM_001982.3	560	Gag/Tag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495384	56495384	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	181	660	0	ENST00000267101.3:c.3574G>T	p.Asp1192Tyr	p.D1192Y	ENST00000267101	NM_001982.3	1192	Gat/Tat																																																																															
IGF1	3479	MSKCC	GRCh37	12	102874128	102874128	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	83	387	0	ENST00000307046.8:c.32T>G	p.Leu11Ter	p.L11*	ENST00000307046	NM_001111285.1	11	tTa/tGa																																																																															
MSI1	4440	MSKCC	GRCh37	12	120785284	120785284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	217	667	1	ENST00000257552.2:c.824C>T	p.Ala275Val	p.A275V	ENST00000257552	NM_002442.3	275	gCg/gTg																																																																															
SETD8	387893	MSKCC	GRCh37	12	123880981	123880981	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	91	277	1	ENST00000330479.4:c.597+2T>C		p.X199_splice	ENST00000330479	NM_020382.3	199																																																																																
SETD8	387893	MSKCC	GRCh37	12	123888162	123888162	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	76	282	0	ENST00000330479.4:c.640A>G	p.Lys214Glu	p.K214E	ENST00000330479	NM_020382.3	214	Aag/Gag																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563384	21563384	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	290	962	0	ENST00000382592.4:c.535T>C	p.Ser179Pro	p.S179P	ENST00000382592	NM_014572.2	179	Tcg/Ccg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589394	28589394	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	16	323	0	ENST00000241453.7:c.2654-1G>T		p.X885_splice	ENST00000241453	NM_004119.2	885																																																																																
FLT1	2321	MSKCC	GRCh37	13	28883039	28883039	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	118	395	0	ENST00000282397.4:c.3661A>C	p.Ser1221Arg	p.S1221R	ENST00000282397	NM_002019.4	1221	Agc/Cgc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28901669	28901669	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	28	366	0	ENST00000282397.4:c.2726T>C	p.Val909Ala	p.V909A	ENST00000282397	NM_002019.4	909	gTt/gCt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001898	29001898	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	121	447	0	ENST00000282397.4:c.1267A>G	p.Ile423Val	p.I423V	ENST00000282397	NM_002019.4	423	Att/Gtt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29004305	29004305	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	63	301	0	ENST00000282397.4:c.989-1G>T		p.X330_splice	ENST00000282397	NM_002019.4	330																																																																																
BRCA2	675	MSKCC	GRCh37	13	32907281	32907281	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	56	455	0	ENST00000380152.3:c.1666A>C	p.Asn556His	p.N556H	ENST00000380152		556	Aat/Cat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907381	32907381	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	54	360	0	ENST00000380152.3:c.1766A>C	p.Lys589Thr	p.K589T	ENST00000380152		589	aAg/aCg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907425	32907425	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	50	302	0	ENST00000380152.3:c.1810A>C	p.Lys604Gln	p.K604Q	ENST00000380152		604	Aaa/Caa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913631	32913631	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	13	383	0	ENST00000380152.3:c.5139T>G	p.Asn1713Lys	p.N1713K	ENST00000380152		1713	aaT/aaG																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913644	32913644	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	66	387	0	ENST00000380152.3:c.5152A>C	p.Asn1718His	p.N1718H	ENST00000380152		1718	Aat/Cat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914295	32914295	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	79	527	0	ENST00000380152.3:c.5803A>C	p.Asn1935His	p.N1935H	ENST00000380152		1935	Aat/Cat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32915039	32915039	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	125	508	0	ENST00000380152.3:c.6547G>T	p.Glu2183Ter	p.E2183*	ENST00000380152		2183	Gaa/Taa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972303	32972303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	61	369	0	ENST00000380152.3:c.9653C>A	p.Ser3218Tyr	p.S3218Y	ENST00000380152		3218	tCt/tAt																																																																															
RB1	5925	MSKCC	GRCh37	13	48955449	48955449	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	86	340	0	ENST00000267163.4:c.1565A>C	p.Asn522Thr	p.N522T	ENST00000267163	NM_000321.2	522	aAt/aCt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355039	73355039	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	60	414	0	ENST00000377767.4:c.331G>T	p.Asp111Tyr	p.D111Y	ENST00000377767	NM_014953.3	111	Gat/Tat																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527667	103527667	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377390651		P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	58	219	0	ENST00000355739.4:c.2975G>A	p.Arg992Gln	p.R992Q	ENST00000355739	NM_000123.3	992	cGa/cAa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438324	110438324	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	69	130	0	ENST00000375856.3:c.77A>G	p.Asn26Ser	p.N26S	ENST00000375856	NM_003749.2	26	aAc/aGc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100070	30100070	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	75	653	0	ENST00000331968.5:c.1550A>G	p.Asn517Ser	p.N517S	ENST00000331968	NM_002742.2	517	aAc/aGc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135341	30135341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	117	435	0	ENST00000331968.5:c.477C>A	p.Phe159Leu	p.F159L	ENST00000331968	NM_002742.2	159	ttC/ttA																																																																															
TSHR	7253	MSKCC	GRCh37	14	81534662	81534662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	91	407	0	ENST00000298171.2:c.307G>T	p.Val103Leu	p.V103L	ENST00000298171	NM_000369.2	103	Gtg/Ttg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81554299	81554299	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	40	382	0	ENST00000298171.2:c.319G>T	p.Glu107Ter	p.E107*	ENST00000298171	NM_000369.2	107	Gaa/Taa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560312	95560312	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	165	393	0	ENST00000343455.3:c.5277A>C	p.Lys1759Asn	p.K1759N	ENST00000343455	NM_177438.2	1759	aaA/aaC																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570011	95570011	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	17	513	0	ENST00000343455.3:c.3722A>C	p.Lys1241Thr	p.K1241T	ENST00000343455	NM_177438.2	1241	aAa/aCa																																																																															
RAD51	5888	MSKCC	GRCh37	15	40993395	40993395	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	23	299	0	ENST00000267868.3:c.221T>G	p.Ile74Ser	p.I74S	ENST00000267868	NM_002875.4	74	aTt/aGt																																																																															
MGA	23269	MSKCC	GRCh37	15	42035338	42035338	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	82	394	0	ENST00000219905.7:c.5180T>G	p.Ile1727Ser	p.I1727S	ENST00000219905	NM_001164273.1	1727	aTt/aGt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701254	43701254	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	98	548	0	ENST00000382044.4:c.5441A>G	p.His1814Arg	p.H1814R	ENST00000382044	NM_001141980.1	1814	cAt/cGt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43771625	43771625	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	162	565	0	ENST00000382044.4:c.758T>C	p.Val253Ala	p.V253A	ENST00000382044	NM_001141980.1	253	gTt/gCt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43783912	43783912	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	148	579	0	ENST00000382044.4:c.326T>C	p.Ile109Thr	p.I109T	ENST00000382044	NM_001141980.1	109	aTc/aCc																																																																															
BLM	641	MSKCC	GRCh37	15	91292763	91292763	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	120	485	0	ENST00000355112.3:c.265T>C	p.Phe89Leu	p.F89L	ENST00000355112	NM_000057.2	89	Ttc/Ctc																																																																															
BLM	641	MSKCC	GRCh37	15	91292973	91292973	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	106	570	0	ENST00000355112.3:c.475G>T	p.Asp159Tyr	p.D159Y	ENST00000355112	NM_000057.2	159	Gac/Tac																																																																															
BLM	641	MSKCC	GRCh37	15	91304059	91304059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	39	559	1	ENST00000355112.3:c.1456C>A	p.Leu486Ile	p.L486I	ENST00000355112	NM_000057.2	486	Ctt/Att																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639087	3639087	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	212	720	0	ENST00000294008.3:c.4552G>T	p.Glu1518Ter	p.E1518*	ENST00000294008	NM_032444.2	1518	Gag/Tag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778780	3778780	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	233	962	0	ENST00000262367.5:c.6268C>A	p.Leu2090Ile	p.L2090I	ENST00000262367	NM_004380.2	2090	Ctc/Atc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820972	3820972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	37	584	0	ENST00000262367.5:c.2479G>T	p.Ala827Ser	p.A827S	ENST00000262367	NM_004380.2	827	Gct/Tct																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3828769	3828769	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	178	599	0	ENST00000262367.5:c.1873C>A	p.Arg625Ser	p.R625S	ENST00000262367	NM_004380.2	625	Cgc/Agc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858122	9858122	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	140	588	0	ENST00000330684.3:c.3279A>C	p.Lys1093Asn	p.K1093N	ENST00000330684	NM_001134407.1	1093	aaA/aaC																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916195	9916195	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	64	528	0	ENST00000330684.3:c.2094T>G	p.Tyr698Ter	p.Y698*	ENST00000330684	NM_001134407.1	698	taT/taG																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923472	9923472	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	128	552	0	ENST00000330684.3:c.1815A>G	p.Ile605Met	p.I605M	ENST00000330684	NM_001134407.1	605	atA/atG																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934828	9934828	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	30	529	0	ENST00000330684.3:c.1462A>G	p.Lys488Glu	p.K488E	ENST00000330684	NM_001134407.1	488	Aaa/Gaa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031990	10031990	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	167	645	2	ENST00000330684.3:c.833C>A	p.Ser278Tyr	p.S278Y	ENST00000330684	NM_001134407.1	278	tCt/tAt																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14026055	14026055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	17	303	0	ENST00000311895.7:c.1015G>A	p.Ala339Thr	p.A339T	ENST00000311895	NM_005236.2	339	Gct/Act																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14042164	14042164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	72	275	0	ENST00000311895.7:c.2711C>A	p.Ser904Tyr	p.S904Y	ENST00000311895	NM_005236.2	904	tCt/tAt																																																																															
NUP93	9688	MSKCC	GRCh37	16	56855438	56855438	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	102	344	0	ENST00000308159.5:c.587T>G	p.Ile196Ser	p.I196S	ENST00000308159	NM_014669.4	196	aTt/aGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828369	72828369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	165	567	0	ENST00000268489.5:c.8212G>T	p.Ala2738Ser	p.A2738S	ENST00000268489	NM_006885.3	2738	Gcc/Tcc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81934265	81934265	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	226	695	0	ENST00000359376.3:c.1242G>T	p.Gln414His	p.Q414H	ENST00000359376	NM_002661.3	414	caG/caT																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81960768	81960768	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	29	457	1	ENST00000359376.3:c.2499G>T	p.Glu833Asp	p.E833D	ENST00000359376	NM_002661.3	833	gaG/gaT																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216889	7216889	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	108	534	0	ENST00000380728.2:c.632G>T	p.Arg211Ile	p.R211I	ENST00000380728		211	aGa/aTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29653074	29653074	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	107	385	0	ENST00000358273.4:c.5072A>C	p.Lys1691Thr	p.K1691T	ENST00000358273	NM_001042492.2	1691	aAg/aCg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40858105	40858105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	67	812	0	ENST00000428826.2:c.1759C>A	p.Leu587Ile	p.L587I	ENST00000428826		587	Ctc/Atc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245219	41245219	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	173	674	0	ENST00000357654.3:c.2329T>C	p.Tyr777His	p.Y777H	ENST00000357654	NM_007294.3	777	Tat/Cat																																																																															
MSI2	124540	MSKCC	GRCh37	17	55478750	55478750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	130	398	0	ENST00000284073.2:c.323G>T	p.Arg108Ile	p.R108I	ENST00000284073	NM_138962.2	108	aGa/aTa																																																																															
MSI2	124540	MSKCC	GRCh37	17	55674265	55674265	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	105	418	0	ENST00000284073.2:c.491T>G	p.Val164Gly	p.V164G	ENST00000284073	NM_138962.2	164	gTg/gGg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760708	59760708	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	115	603	1	ENST00000259008.2:c.3699C>A	p.Asn1233Lys	p.N1233K	ENST00000259008	NM_032043.2	1233	aaC/aaA																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59878831	59878831	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	43	289	0	ENST00000259008.2:c.923A>C	p.Lys308Thr	p.K308T	ENST00000259008	NM_032043.2	308	aAa/aCa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554607	63554607	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	37	614	0	ENST00000307078.5:c.132G>T	p.Gln44His	p.Q44H	ENST00000307078	NM_004655.3	44	caG/caT																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39573273	39573273	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	22	402	0	ENST00000262039.4:c.754T>G	p.Leu252Val	p.L252V	ENST00000262039	NM_002647.2	252	Tta/Gta																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39613817	39613817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	76	417	0	ENST00000262039.4:c.1735G>T	p.Asp579Tyr	p.D579Y	ENST00000262039	NM_002647.2	579	Gat/Tat																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39617746	39617746	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	91	379	1	ENST00000262039.4:c.1930G>T	p.Asp644Tyr	p.D644Y	ENST00000262039	NM_002647.2	644	Gat/Tat																																																																															
BCL2	596	MSKCC	GRCh37	18	60985834	60985834	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	116	412	0	ENST00000333681.4:c.66G>T	p.Lys22Asn	p.K22N	ENST00000333681		22	aaG/aaT																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5225797	5225797	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	55	810	0	ENST00000357368.4:c.2435A>G	p.Tyr812Cys	p.Y812C	ENST00000357368	NM_002850.3	812	tAc/tGc																																																																															
INSR	3643	MSKCC	GRCh37	19	7117359	7117359	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	52	732	0	ENST00000302850.5:c.3857T>G	p.Ile1286Ser	p.I1286S	ENST00000302850	NM_000208.2	1286	aTt/aGt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265043	10265043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	186	621	1	ENST00000340748.4:c.1897G>A	p.Ala633Thr	p.A633T	ENST00000340748		633	Gca/Aca																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144044	11144044	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	46	760	0	ENST00000344626.4:c.3625A>T	p.Ser1209Cys	p.S1209C	ENST00000344626	NM_003072.3	1209	Agc/Tgc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11169479	11169479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	203	636	0	ENST00000344626.4:c.4549C>A	p.His1517Asn	p.H1517N	ENST00000344626	NM_003072.3	1517	Cac/Aac																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350059	15350059	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	192	790	0	ENST00000263377.2:c.3593A>C	p.Asn1198Thr	p.N1198T	ENST00000263377	NM_058243.2	1198	aAc/aCc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943352	17943352	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	55	642	0	ENST00000458235.1:c.2656T>G	p.Tyr886Asp	p.Y886D	ENST00000458235	NM_000215.3	886	Tat/Gat																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271373	18271373	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	34	606	0	ENST00000222254.8:c.415G>T	p.Gly139Trp	p.G139W	ENST00000222254	NM_005027.3	139	Ggg/Tgg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18963845	18963845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	28	506	0	ENST00000262803.5:c.1022G>T	p.Arg341Ile	p.R341I	ENST00000262803	NM_002911.3	341	aGa/aTa																																																																															
AXL	558	MSKCC	GRCh37	19	41749594	41749594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	238	727	1	ENST00000301178.4:c.1519C>T	p.Arg507Trp	p.R507W	ENST00000301178	NM_021913.4	507	Cgg/Tgg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716076	52716076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	42	826	0	ENST00000322088.6:c.641C>A	p.Ser214Tyr	p.S214Y	ENST00000322088	NM_014225.5	214	tCt/tAt																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086005	16086005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	161	511	0	ENST00000281043.3:c.1181G>A	p.Arg394His	p.R394H	ENST00000281043	NM_005378.4	394	cGc/cAc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25536782	25536782	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	209	677	1	ENST00000264709.3:c.72G>T	p.Lys24Asn	p.K24N	ENST00000264709	NM_175629.2	24	aaG/aaT																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26101068	26101068	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	186	569	0	ENST00000435504.4:c.24G>T	p.Lys8Asn	p.K8N	ENST00000435504		8	aaG/aaT																																																																															
ALK	238	MSKCC	GRCh37	2	30142947	30142947	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	228	822	1	ENST00000389048.3:c.579G>T	p.Lys193Asn	p.K193N	ENST00000389048	NM_004304.4	193	aaG/aaT																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47600993	47600993	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	32	607	0	ENST00000263735.4:c.231A>C	p.Lys77Asn	p.K77N	ENST00000263735	NM_002354.2	77	aaA/aaC																																																																															
MSH2	4436	MSKCC	GRCh37	2	47635670	47635670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	122	453	0	ENST00000233146.2:c.342G>T	p.Glu114Asp	p.E114D	ENST00000233146	NM_000251.2	114	gaG/gaT																																																																															
MSH2	4436	MSKCC	GRCh37	2	47657077	47657077	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	85	229	0	ENST00000233146.2:c.1273G>T	p.Glu425Ter	p.E425*	ENST00000233146	NM_000251.2	425	Gaa/Taa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026424	48026424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	119	480	0	ENST00000234420.5:c.1302G>T	p.Glu434Asp	p.E434D	ENST00000234420	NM_000179.2	434	gaG/gaT																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033717	48033717	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	75	428	0	ENST00000234420.5:c.3928G>T	p.Glu1310Ter	p.E1310*	ENST00000234420	NM_000179.2	1310	Gag/Tag																																																																															
XPO1	7514	MSKCC	GRCh37	2	61749804	61749804	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	31	340	0	ENST00000401558.2:c.243A>C	p.Gln81His	p.Q81H	ENST00000401558	NM_003400.3	81	caA/caC																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128036860	128036860	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	67	579	0	ENST00000285398.2:c.1619A>C	p.Lys540Thr	p.K540T	ENST00000285398	NM_000122.1	540	aAa/aCa																																																																															
ACVR1	90	MSKCC	GRCh37	2	158594961	158594961	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	119	411	0	ENST00000263640.3:c.1386C>A	p.Phe462Leu	p.F462L	ENST00000263640	NM_001105.4	462	ttC/ttA																																																																															
ACVR1	90	MSKCC	GRCh37	2	158617449	158617449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	87	533	0	ENST00000263640.3:c.1207G>A	p.Asp403Asn	p.D403N	ENST00000263640	NM_001105.4	403	Gat/Aat																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095716	178095716	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	94	438	1	ENST00000397062.3:c.1615T>G	p.Leu539Val	p.L539V	ENST00000397062	NM_006164.4	539	Ttg/Gtg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728592	190728592	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	116	501	0	ENST00000441310.2:c.1980G>T	p.Trp660Cys	p.W660C	ENST00000441310	NM_000534.4	660	tgG/tgT																																																																															
PMS1	5378	MSKCC	GRCh37	2	190732568	190732568	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	23	489	0	ENST00000441310.2:c.2386A>G	p.Thr796Ala	p.T796A	ENST00000441310	NM_000534.4	796	Aca/Gca																																																																															
PMS1	5378	MSKCC	GRCh37	2	190738329	190738329	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	91	364	0	ENST00000441310.2:c.2581A>G	p.Asn861Asp	p.N861D	ENST00000441310	NM_000534.4	861	Aat/Gat																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267282	198267282	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	73	338	0	ENST00000335508.6:c.2075A>C	p.His692Pro	p.H692P	ENST00000335508	NM_012433.2	692	cAt/cCt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198273134	198273134	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	129	598	2	ENST00000335508.6:c.1076C>A	p.Pro359Gln	p.P359Q	ENST00000335508	NM_012433.2	359	cCa/cAa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198285850	198285850	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	27	426	0	ENST00000335508.6:c.203A>G	p.Asp68Gly	p.D68G	ENST00000335508	NM_012433.2	68	gAt/gGt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212568841	212568841	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	93	469	0	ENST00000342788.4:c.1277G>T	p.Arg426Ile	p.R426I	ENST00000342788	NM_005235.2	426	aGa/aTa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212570080	212570080	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	92	396	0	ENST00000342788.4:c.1161G>T	p.Glu387Asp	p.E387D	ENST00000342788	NM_005235.2	387	gaG/gaT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812179	212812179	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	40	255	0	ENST00000342788.4:c.397G>T	p.Glu133Ter	p.E133*	ENST00000342788	NM_005235.2	133	Gaa/Taa																																																																															
BARD1	580	MSKCC	GRCh37	2	215593502	215593502	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	85	325	0	ENST00000260947.4:c.2232T>G	p.Asn744Lys	p.N744K	ENST00000260947	NM_000465.2	744	aaT/aaG																																																																															
INHA	3623	MSKCC	GRCh37	2	220439733	220439733	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	271	903	0	ENST00000243786.2:c.586C>G	p.Leu196Val	p.L196V	ENST00000243786	NM_002191.3	196	Ctg/Gtg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225343002	225343002	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	80	526	0	ENST00000264414.4:c.2090A>G	p.Asp697Gly	p.D697G	ENST00000264414	NM_003590.4	697	gAc/gGc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376097	225376097	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	19	478	0	ENST00000264414.4:c.857A>C	p.His286Pro	p.H286P	ENST00000264414	NM_003590.4	286	cAt/cCt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225378285	225378285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	71	356	0	ENST00000264414.4:c.610G>T	p.Asp204Tyr	p.D204Y	ENST00000264414	NM_003590.4	204	Gat/Tat																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661538	227661538	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	159	754	0	ENST00000305123.5:c.1917C>A	p.Ser639Arg	p.S639R	ENST00000305123	NM_005544.2	639	agC/agA																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793237	242793237	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	57	815	0	ENST00000334409.5:c.840G>T	p.Glu280Asp	p.E280D	ENST00000334409	NM_005018.2	280	gaG/gaT																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546815	9546815	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	111	464	0	ENST00000353224.5:c.1207T>C	p.Ser403Pro	p.S403P	ENST00000353224	NM_177990.2	403	Tcc/Ccc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561480	9561480	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	176	531	0	ENST00000353224.5:c.302G>T	p.Arg101Met	p.R101M	ENST00000353224	NM_177990.2	101	aGg/aTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	30955529	30955529	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	84	365	0	ENST00000375687.4:c.141-1G>T		p.X47_splice	ENST00000375687	NM_015338.5	47																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31023526	31023526	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	162	538	0	ENST00000375687.4:c.3011A>C	p.Asp1004Ala	p.D1004A	ENST00000375687	NM_015338.5	1004	gAc/gCc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31388649	31388649	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	113	499	0	ENST00000328111.2:c.1914A>T	p.Glu638Asp	p.E638D	ENST00000328111	NM_006892.3	638	gaA/gaT																																																																															
TOP1	7150	MSKCC	GRCh37	20	39742656	39742656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	107	366	0	ENST00000361337.2:c.1499A>G	p.Asp500Gly	p.D500G	ENST00000361337	NM_003286.2	500	gAc/gGc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40757398	40757398	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	158	619	0	ENST00000373198.4:c.2900T>A	p.Ile967Asn	p.I967N	ENST00000373198	NM_133170.3	967	aTt/aAt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264067	46264067	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	57	264	1	ENST00000371998.3:c.1114G>T	p.Glu372Ter	p.E372*	ENST00000371998		372	Gaa/Taa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46267889	46267889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	111	535	0	ENST00000371998.3:c.2650A>G	p.Met884Val	p.M884V	ENST00000371998		884	Atg/Gtg																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945564	54945564	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	228	780	1	ENST00000312783.6:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000312783	NM_198436.1	336	Gag/Tag																																																																															
AURKA	6790	MSKCC	GRCh37	20	54948498	54948498	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	100	444	0	ENST00000312783.6:c.820G>T	p.Asp274Tyr	p.D274Y	ENST00000312783	NM_198436.1	274	Gat/Tat																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62293225	62293225	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	428	644	0	ENST00000508582.2:c.324G>T	p.Lys108Asn	p.K108N	ENST00000508582		108	aaG/aaT																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62293826	62293826	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	184	503	0	ENST00000508582.2:c.396-1G>T		p.X132_splice	ENST00000508582		132																																																																																
TMPRSS2	7113	MSKCC	GRCh37	21	42866480	42866480	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	259	875	0	ENST00000398585.3:c.152A>G	p.Tyr51Cys	p.Y51C	ENST00000398585	NM_001135099.1	51	tAc/tGc																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22142630	22142630	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	60	377	0	ENST00000215832.6:c.772T>G	p.Leu258Val	p.L258V	ENST00000215832	NM_002745.4	258	Tta/Gta																																																																															
EP300	2033	MSKCC	GRCh37	22	41537224	41537224	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	126	441	0	ENST00000263253.7:c.2051C>A	p.Ser684Tyr	p.S684Y	ENST00000263253	NM_001429.3	684	tCt/tAt																																																																															
EP300	2033	MSKCC	GRCh37	22	41573990	41573990	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	151	567	0	ENST00000263253.7:c.6275A>G	p.Tyr2092Cys	p.Y2092C	ENST00000263253	NM_001429.3	2092	tAt/tGt																																																																															
RAF1	5894	MSKCC	GRCh37	3	12632314	12632314	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	43	542	0	ENST00000251849.4:c.1353G>T	p.Gln451His	p.Q451H	ENST00000251849	NM_002880.3	451	caG/caT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162572	47162572	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	16	380	0	ENST00000409792.3:c.3554A>C	p.Asn1185Thr	p.N1185T	ENST00000409792	NM_014159.6	1185	aAt/aCt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163460	47163460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	38	342	0	ENST00000409792.3:c.2666G>T	p.Gly889Val	p.G889V	ENST00000409792	NM_014159.6	889	gGa/gTa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164540	47164540	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	49	380	0	ENST00000409792.3:c.1586G>T	p.Arg529Ile	p.R529I	ENST00000409792	NM_014159.6	529	aGa/aTa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165206	47165206	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	51	328	0	ENST00000409792.3:c.920C>A	p.Ser307Tyr	p.S307Y	ENST00000409792	NM_014159.6	307	tCt/tAt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437667	52437667	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	40	713	0	ENST00000460680.1:c.1494G>T	p.Glu498Asp	p.E498D	ENST00000460680	NM_004656.3	498	gaG/gaT																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620700	52620700	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	91	251	0	ENST00000394830.3:c.3053A>G	p.Tyr1018Cys	p.Y1018C	ENST00000394830	NM_018313.4	1018	tAc/tGc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52676053	52676053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	72	393	1	ENST00000394830.3:c.1004G>T	p.Arg335Ile	p.R335I	ENST00000394830	NM_018313.4	335	aGa/aTa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71096185	71096185	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	31	386	0	ENST00000318789.4:c.572T>C	p.Leu191Ser	p.L191S	ENST00000318789	NM_032682.5	191	tTa/tCa																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72890297	72890297	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	29	473	0	ENST00000325599.8:c.385A>C	p.Ile129Leu	p.I129L	ENST00000325599	NM_018130.2	129	Att/Ctt																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114215	73114215	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	95	402	0	ENST00000356692.5:c.851A>C	p.Asp284Ala	p.D284A	ENST00000356692		284	gAt/gCt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448547	89448547	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	26	487	0	ENST00000336596.2:c.1511T>C	p.Ile504Thr	p.I504T	ENST00000336596	NM_005233.5	504	aTa/aCa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89478290	89478290	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	17	354	0	ENST00000336596.2:c.2109G>T	p.Glu703Asp	p.E703D	ENST00000336596	NM_005233.5	703	gaG/gaT																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480463	89480463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	84	301	0	ENST00000336596.2:c.2300T>C	p.Leu767Pro	p.L767P	ENST00000336596	NM_005233.5	767	cTt/cCt																																																																															
ATR	545	MSKCC	GRCh37	3	142254991	142254991	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	37	315	0	ENST00000350721.4:c.3778G>T	p.Glu1260Ter	p.E1260*	ENST00000350721	NM_001184.3	1260	Gaa/Taa																																																																															
ATR	545	MSKCC	GRCh37	3	142266590	142266590	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	125	367	0	ENST00000350721.4:c.3334G>T	p.Asp1112Tyr	p.D1112Y	ENST00000350721	NM_001184.3	1112	Gat/Tat																																																																															
ATR	545	MSKCC	GRCh37	3	142268353	142268353	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	44	396	0	ENST00000350721.4:c.3139G>T	p.Asp1047Tyr	p.D1047Y	ENST00000350721	NM_001184.3	1047	Gat/Tat																																																																															
ATR	545	MSKCC	GRCh37	3	142268411	142268411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	81	437	0	ENST00000350721.4:c.3081G>T	p.Glu1027Asp	p.E1027D	ENST00000350721	NM_001184.3	1027	gaG/gaT																																																																															
ATR	545	MSKCC	GRCh37	3	142281573	142281573	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	230	531	0	ENST00000350721.4:c.671G>T	p.Arg224Met	p.R224M	ENST00000350721	NM_001184.3	224	aGg/aTg																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149375028	149375028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	311	883	0	ENST00000360632.3:c.66G>T	p.Gln22His	p.Q22H	ENST00000360632	NM_015472.4	22	caG/caT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917651	178917651	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	41	306	0	ENST00000263967.3:c.526G>T	p.Glu176Ter	p.E176*	ENST00000263967	NM_006218.2	176	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936076	178936076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	88	409	0	ENST00000263967.3:c.1618C>A	p.Leu540Ile	p.L540I	ENST00000263967	NM_006218.2	540	Ctc/Atc																																																																															
BCL6	604	MSKCC	GRCh37	3	187447407	187447407	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	190	699	0	ENST00000232014.4:c.786G>T	p.Lys262Asn	p.K262N	ENST00000232014	NM_001130845.1	262	aaG/aaT																																																																															
TP63	8626	MSKCC	GRCh37	3	189526125	189526125	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	198	631	0	ENST00000264731.3:c.389C>A	p.Ser130Tyr	p.S130Y	ENST00000264731	NM_003722.4	130	tCc/tAc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1918703	1918703	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	98	426	0	ENST00000382891.5:c.866A>T	p.Gln289Leu	p.Q289L	ENST00000382891	NM_133335.3	289	cAg/cTg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1953893	1953893	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	62	895	0	ENST00000382891.5:c.2072A>G	p.His691Arg	p.H691R	ENST00000382891	NM_133335.3	691	cAc/cGc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127539	55127539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	104	372	0	ENST00000257290.5:c.327G>T	p.Glu109Asp	p.E109D	ENST00000257290	NM_006206.4	109	gaG/gaT																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129990	55129990	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	166	599	0	ENST00000257290.5:c.524G>T	p.Arg175Ile	p.R175I	ENST00000257290	NM_006206.4	175	aGa/aTa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129996	55129996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	72	609	0	ENST00000257290.5:c.530G>A	p.Gly177Asp	p.G177D	ENST00000257290	NM_006206.4	177	gGc/gAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144115	55144115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	152	552	0	ENST00000257290.5:c.1944G>T	p.Met648Ile	p.M648I	ENST00000257290	NM_006206.4	648	atG/atT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217217	66217217	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	90	451	0	ENST00000273854.3:c.2398G>T	p.Asp800Tyr	p.D800Y	ENST00000273854	NM_004439.5	800	Gat/Tat																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270182	66270182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	79	260	0	ENST00000273854.3:c.1700G>T	p.Ser567Ile	p.S567I	ENST00000273854	NM_004439.5	567	aGc/aTc																																																																															
TET2	54790	MSKCC	GRCh37	4	106155626	106155626	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	59	396	0	ENST00000380013.4:c.527A>C	p.Asn176Thr	p.N176T	ENST00000380013	NM_001127208.2	176	aAt/aCt																																																																															
TET2	54790	MSKCC	GRCh37	4	106157419	106157419	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	21	325	0	ENST00000380013.4:c.2320T>G	p.Ser774Ala	p.S774A	ENST00000380013	NM_001127208.2	774	Tca/Gca																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143350334	143350334	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	53	243	0	ENST00000262992.4:c.128T>C	p.Phe43Ser	p.F43S	ENST00000262992	NM_001101669.1	43	tTc/tCc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250858	153250858	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	58	411	0	ENST00000281708.4:c.1202A>C	p.Asn401Thr	p.N401T	ENST00000281708	NM_033632.3	401	aAc/aCc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510034	187510034	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	26	454	0	ENST00000441802.2:c.13479T>G	p.Phe4493Leu	p.F4493L	ENST00000441802	NM_005245.3	4493	ttT/ttG																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510294	187510294	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	25	423	0	ENST00000441802.2:c.13219G>T	p.Asp4407Tyr	p.D4407Y	ENST00000441802	NM_005245.3	4407	Gat/Tat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629136	187629136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	146	514	0	ENST00000441802.2:c.1846A>G	p.Ser616Gly	p.S616G	ENST00000441802	NM_005245.3	616	Agt/Ggt																																																																															
SDHA	6389	MSKCC	GRCh37	5	228301	228301	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	65	203	0	ENST00000264932.6:c.623C>A	p.Ser208Tyr	p.S208Y	ENST00000264932	NM_004168.2	208	tCt/tAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1282588	1282588	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	188	623	1	ENST00000310581.5:c.1725C>A	p.Phe575Leu	p.F575L	ENST00000310581	NM_198253.2	575	ttC/ttA																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871261	35871261	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	25	362	0	ENST00000303115.3:c.483A>C	p.Lys161Asn	p.K161N	ENST00000303115	NM_002185.3	161	aaA/aaC																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876418	35876418	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	171	622	0	ENST00000303115.3:c.1210C>A	p.Leu404Ile	p.L404I	ENST00000303115	NM_002185.3	404	Ctc/Atc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38943074	38943074	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	45	210	0	ENST00000357387.3:c.4914-1G>T		p.X1638_splice	ENST00000357387	NM_152756.3	1638																																																																																
RICTOR	253260	MSKCC	GRCh37	5	38944616	38944616	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	76	442	0	ENST00000357387.3:c.4845A>C	p.Glu1615Asp	p.E1615D	ENST00000357387	NM_152756.3	1615	gaA/gaC																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950665	38950665	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	80	362	0	ENST00000357387.3:c.3285G>T	p.Lys1095Asn	p.K1095N	ENST00000357387	NM_152756.3	1095	aaG/aaT																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179451	56179451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	57	293	0	ENST00000399503.3:c.3764C>A	p.Ser1255Tyr	p.S1255Y	ENST00000399503	NM_005921.1	1255	tCt/tAt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753372	57753372	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	93	481	0	ENST00000274289.3:c.752T>C	p.Val251Ala	p.V251A	ENST00000274289	NM_006622.3	251	gTc/gCc																																																																															
MSH3	4437	MSKCC	GRCh37	5	80021328	80021328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	110	485	0	ENST00000265081.6:c.1397G>A	p.Ser466Asn	p.S466N	ENST00000265081	NM_002439.4	466	aGc/aAc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86659212	86659212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	16	213	0	ENST00000274376.6:c.1501G>T	p.Asp501Tyr	p.D501Y	ENST00000274376	NM_002890.2	501	Gat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112173366	112173366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	74	291	0	ENST00000257430.4:c.2075C>A	p.Pro692His	p.P692H	ENST00000257430	NM_000038.5	692	cCt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112174376	112174376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	65	277	0	ENST00000257430.4:c.3085C>T	p.Leu1029Phe	p.L1029F	ENST00000257430	NM_000038.5	1029	Ctt/Ttt																																																																															
APC	324	MSKCC	GRCh37	5	112175370	112175370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	63	245	0	ENST00000257430.4:c.4079C>A	p.Ser1360Tyr	p.S1360Y	ENST00000257430	NM_000038.5	1360	tCt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112175778	112175778	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	14	298	0	ENST00000257430.4:c.4487C>A	p.Thr1496Asn	p.T1496N	ENST00000257430	NM_000038.5	1496	aCt/aAt																																																																															
APC	324	MSKCC	GRCh37	5	112175844	112175844	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	64	250	0	ENST00000257430.4:c.4553A>C	p.Lys1518Thr	p.K1518T	ENST00000257430	NM_000038.5	1518	aAa/aCa																																																																															
APC	324	MSKCC	GRCh37	5	112176650	112176650	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	58	267	0	ENST00000257430.4:c.5359A>G	p.Thr1787Ala	p.T1787A	ENST00000257430	NM_000038.5	1787	Aca/Gca																																																																															
APC	324	MSKCC	GRCh37	5	112178497	112178497	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	66	299	0	ENST00000257430.4:c.7206T>G	p.Asn2402Lys	p.N2402K	ENST00000257430	NM_000038.5	2402	aaT/aaG																																																																															
RAD50	10111	MSKCC	GRCh37	5	131915128	131915128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	155	520	0	ENST00000265335.6:c.485C>T	p.Ser162Phe	p.S162F	ENST00000265335		162	tCt/tTt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131924445	131924445	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	16	443	0	ENST00000265335.6:c.1118C>A	p.Ser373Tyr	p.S373Y	ENST00000265335		373	tCt/tAt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131953887	131953887	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	71	398	0	ENST00000265335.6:c.3290T>G	p.Phe1097Cys	p.F1097C	ENST00000265335		1097	tTt/tGt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131978000	131978000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	24	443	0	ENST00000265335.6:c.3883C>A	p.Gln1295Lys	p.Q1295K	ENST00000265335		1295	Cag/Aag																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519734	176519734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	190	806	0	ENST00000292408.4:c.1006G>T	p.Gly336Cys	p.G336C	ENST00000292408	NM_213647.1	336	Ggc/Tgc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562854	176562854	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	37	574	0	ENST00000439151.2:c.750A>T	p.Lys250Asn	p.K250N	ENST00000439151	NM_022455.4	250	aaA/aaT																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636770	176636770	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	122	517	0	ENST00000439151.2:c.1370T>G	p.Phe457Cys	p.F457C	ENST00000439151	NM_022455.4	457	tTt/tGt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176678743	176678743	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	23	423	0	ENST00000439151.2:c.4654T>G	p.Leu1552Val	p.L1552V	ENST00000439151	NM_022455.4	1552	Ttg/Gtg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672961	30672961	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	39	825	0	ENST00000376406.3:c.3999G>T	p.Gln1333His	p.Q1333H	ENST00000376406	NM_014641.2	1333	caG/caT																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680145	30680145	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	211	673	0	ENST00000376406.3:c.1574T>C	p.Val525Ala	p.V525A	ENST00000376406	NM_014641.2	525	gTg/gCg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681615	30681615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	150	446	0	ENST00000376406.3:c.482G>T	p.Arg161Met	p.R161M	ENST00000376406	NM_014641.2	161	aGg/aTg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681866	30681866	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	179	583	0	ENST00000376406.3:c.231G>T	p.Glu77Asp	p.E77D	ENST00000376406	NM_014641.2	77	gaG/gaT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165292	32165292	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	254	962	0	ENST00000375023.3:c.4836T>A	p.Cys1612Ter	p.C1612*	ENST00000375023	NM_004557.3	1612	tgT/tgA																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32172039	32172039	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	191	699	0	ENST00000375023.3:c.2993T>G	p.Phe998Cys	p.F998C	ENST00000375023	NM_004557.3	998	tTt/tGt																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43748575	43748575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	114	379	0	ENST00000523873.1:c.529A>G	p.Ser177Gly	p.S177G	ENST00000523873		177	Agc/Ggc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93974369	93974369	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	85	421	0	ENST00000369303.4:c.1685C>A	p.Ala562Asp	p.A562D	ENST00000369303	NM_004440.3	562	gCt/gAt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106536237	106536237	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	33	508	0	ENST00000369096.4:c.204T>G	p.Asp68Glu	p.D68E	ENST00000369096	NM_001198.3	68	gaT/gaG																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609861	117609861	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	150	541	0	ENST00000368508.3:c.6838G>T	p.Glu2280Ter	p.E2280*	ENST00000368508	NM_002944.2	2280	Gaa/Taa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117630067	117630067	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	12	322	0	ENST00000368508.3:c.6459G>T	p.Glu2153Asp	p.E2153D	ENST00000368508	NM_002944.2	2153	gaG/gaT																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138198307	138198307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	76	280	0	ENST00000237289.4:c.900G>T	p.Glu300Asp	p.E300D	ENST00000237289	NM_001270507.1	300	gaG/gaT																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382206	152382206	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	24	424	0	ENST00000206249.3:c.1316A>C	p.Asn439Thr	p.N439T	ENST00000206249	NM_000125.3	439	aAt/aCt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2956929	2956929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	161	611	0	ENST00000396946.4:c.2698C>A	p.Leu900Ile	p.L900I	ENST00000396946	NM_032415.4	900	Ctt/Att																																																																															
RAC1	5879	MSKCC	GRCh37	7	6441557	6441557	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	17	169	0	ENST00000356142.4:c.404A>C	p.Lys135Thr	p.K135T	ENST00000356142	NM_018890.3	135	aAa/aCa																																																																															
ETV1	2115	MSKCC	GRCh37	7	14027770	14027770	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	97	365	0	ENST00000405192.2:c.74A>C	p.Lys25Thr	p.K25T	ENST00000405192	NM_001163147.1	25	aAa/aCa																																																																															
HGF	3082	MSKCC	GRCh37	7	81346567	81346567	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	77	345	0	ENST00000222390.5:c.1386T>G	p.Asp462Glu	p.D462E	ENST00000222390	NM_000601.4	462	gaT/gaG																																																																															
HGF	3082	MSKCC	GRCh37	7	81350074	81350074	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	21	397	0	ENST00000222390.5:c.1258G>T	p.Glu420Ter	p.E420*	ENST00000222390	NM_000601.4	420	Gaa/Taa																																																																															
HGF	3082	MSKCC	GRCh37	7	81392155	81392155	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	48	319	0	ENST00000222390.5:c.122A>T	p.Glu41Val	p.E41V	ENST00000222390	NM_000601.4	41	gAa/gTa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508964	106508964	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	115	551	0	ENST00000359195.3:c.958A>G	p.Lys320Glu	p.K320E	ENST00000359195	NM_002649.2	320	Aag/Gag																																																																															
MET	4233	MSKCC	GRCh37	7	116398529	116398529	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	98	458	0	ENST00000397752.3:c.2119C>A	p.Leu707Ile	p.L707I	ENST00000397752	NM_000245.2	707	Ctt/Att																																																																															
BRAF	673	MSKCC	GRCh37	7	140434465	140434465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	116	389	0	ENST00000288602.6:c.2233C>A	p.Leu745Ile	p.L745I	ENST00000288602	NM_004333.4	745	Cta/Ata																																																																															
BRAF	673	MSKCC	GRCh37	7	140449184	140449184	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	33	423	0	ENST00000288602.6:c.1895C>A	p.Pro632Gln	p.P632Q	ENST00000288602	NM_004333.4	632	cCa/cAa																																																																															
EZH2	2146	MSKCC	GRCh37	7	148512029	148512029	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	47	356	0	ENST00000320356.2:c.1649A>G	p.Lys550Arg	p.K550R	ENST00000320356	NM_004456.4	550	aAg/aGg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148524269	148524269	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	79	363	0	ENST00000320356.2:c.715G>T	p.Glu239Ter	p.E239*	ENST00000320356	NM_004456.4	239	Gaa/Taa																																																																															
EZH2	2146	MSKCC	GRCh37	7	148529792	148529792	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	98	355	0	ENST00000320356.2:c.297G>T	p.Lys99Asn	p.K99N	ENST00000320356	NM_004456.4	99	aaG/aaT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151841880	151841880	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	100	370	0	ENST00000262189.6:c.14261T>C	p.Phe4754Ser	p.F4754S	ENST00000262189	NM_170606.2	4754	tTt/tCt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853397	151853397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	32	388	0	ENST00000262189.6:c.11705C>T	p.Ala3902Val	p.A3902V	ENST00000262189	NM_170606.2	3902	gCc/gTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860422	151860422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	191	578	0	ENST00000262189.6:c.10240C>A	p.Gln3414Lys	p.Q3414K	ENST00000262189	NM_170606.2	3414	Caa/Aaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877898	151877898	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	124	405	0	ENST00000262189.6:c.7047C>A	p.Phe2349Leu	p.F2349L	ENST00000262189	NM_170606.2	2349	ttC/ttA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945079	151945079	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	43	600	0	ENST00000262189.6:c.2440A>G	p.Thr814Ala	p.T814A	ENST00000262189	NM_170606.2	814	Aca/Gca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945356	151945356	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	24	181	0	ENST00000262189.6:c.2163A>C	p.Gln721His	p.Q721H	ENST00000262189	NM_170606.2	721	caA/caC																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29197718	29197718	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	247	796	0	ENST00000240100.2:c.476C>A	p.Ser159Tyr	p.S159Y	ENST00000240100	NM_001394.6	159	tCt/tAt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38156975	38156975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	105	537	0	ENST00000317025.8:c.2745G>T	p.Lys915Asn	p.K915N	ENST00000317025	NM_023034.1	915	aaG/aaT																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370987	55370987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	98	652	0	ENST00000297316.4:c.289G>A	p.Glu97Lys	p.E97K	ENST00000297316	NM_022454.3	97	Gag/Aag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931838	68931838	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	83	578	0	ENST00000288368.4:c.268G>T	p.Val90Phe	p.V90F	ENST00000288368	NM_024870.2	90	Gtc/Ttc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68934376	68934376	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	83	410	0	ENST00000288368.4:c.441+1G>T		p.X147_splice	ENST00000288368	NM_024870.2	147																																																																																
PREX2	80243	MSKCC	GRCh37	8	68995590	68995590	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	125	603	1	ENST00000288368.4:c.1994C>A	p.Pro665His	p.P665H	ENST00000288368	NM_024870.2	665	cCt/cAt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70970887	70970887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	81	483	0	ENST00000276594.2:c.1374C>A	p.His458Gln	p.H458Q	ENST00000276594	NM_024504.3	458	caC/caA																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864854	117864854	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	133	510	0	ENST00000297338.2:c.1255G>T	p.Glu419Ter	p.E419*	ENST00000297338	NM_006265.2	419	Gaa/Taa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117868428	117868428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	25	536	0	ENST00000297338.2:c.914C>T	p.Ala305Val	p.A305V	ENST00000297338	NM_006265.2	305	gCa/gTa																																																																															
AGO2	27161	MSKCC	GRCh37	8	141570575	141570575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	121	619	0	ENST00000220592.5:c.553T>C	p.Ser185Pro	p.S185P	ENST00000220592	NM_012154.3	185	Tcc/Ccc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5081859	5081859	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	11	198	0	ENST00000381652.3:c.2569A>G	p.Lys857Glu	p.K857E	ENST00000381652	NM_004972.3	857	Aag/Gag																																																																															
TEK	7010	MSKCC	GRCh37	9	27158059	27158059	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	159	554	0	ENST00000380036.4:c.283A>C	p.Lys95Gln	p.K95Q	ENST00000380036	NM_000459.3	95	Aag/Cag																																																																															
TEK	7010	MSKCC	GRCh37	9	27180291	27180291	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	43	566	0	ENST00000380036.4:c.955A>G	p.Asn319Asp	p.N319D	ENST00000380036	NM_000459.3	319	Aat/Gat																																																																															
TEK	7010	MSKCC	GRCh37	9	27205025	27205025	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	179	548	0	ENST00000380036.4:c.2326A>C	p.Asn776His	p.N776H	ENST00000380036	NM_000459.3	776	Aat/Cat																																																																															
FANCC	2176	MSKCC	GRCh37	9	98011424	98011424	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	121	408	0	ENST00000289081.3:c.150A>C	p.Glu50Asp	p.E50D	ENST00000289081	NM_000136.2	50	gaA/gaC																																																																															
ABL1	25	MSKCC	GRCh37	9	133750288	133750288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	32	551	0	ENST00000318560.5:c.1119G>T	p.Glu373Asp	p.E373D	ENST00000318560	NM_005157.4	373	gaG/gaT																																																																															
ABL1	25	MSKCC	GRCh37	9	133760681	133760681	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	277	879	0	ENST00000318560.5:c.3004T>C	p.Phe1002Leu	p.F1002L	ENST00000318560	NM_005157.4	1002	Ttc/Ctc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15840923	15840923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	84	180	0	ENST00000307771.7:c.1007A>C	p.Asn336Thr	p.N336T	ENST00000307771	NM_005089.3	336	aAc/aCc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922983	39922983	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	60	335	0	ENST00000378444.4:c.3725A>G	p.Gln1242Arg	p.Q1242R	ENST00000378444	NM_001123385.1	1242	cAg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038527	47038527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	198	356	1	ENST00000329236.7:c.458G>A	p.Arg153Gln	p.R153Q	ENST00000329236	NM_001204466.1	153	cGa/cAa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410567	63410567	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	162	414	0	ENST00000330258.3:c.2600G>T	p.Ser867Ile	p.S867I	ENST00000330258	NM_152424.3	867	aGc/aTc																																																																															
BTK	695	MSKCC	GRCh37	X	100629534	100629534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	55	300	0	ENST00000308731.7:c.230G>T	p.Arg77Ile	p.R77I	ENST00000308731	NM_000061.2	77	aGa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	211	737	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520009		P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	112	482	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	483	803	1	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	92	310	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	157	529	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	101	413	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068357	26068357	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	61	308	0	ENST00000435504.4:c.133G>T	p.Glu45Ter	p.E45*	ENST00000435504		45	Gaa/Taa																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741858	17741858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	38	155	0	ENST00000250003.3:c.529G>A	p.Ala177Thr	p.A177T	ENST00000250003	NM_002478.4	177	Gcc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs879255270		P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	368	606	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812293	212812293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	35	311	1	ENST00000342788.4:c.283C>T	p.Arg95Cys	p.R95C	ENST00000342788	NM_005235.2	95	Cgt/Tgt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46242662	46242662	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	182	383	0	ENST00000334344.6:c.1624C>T	p.Arg542Ter	p.R542*	ENST00000334344	NM_152641.2	542	Cga/Tga																																																																															
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519945		P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	167	526	0	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																																																															
ETV6	2120	MSKCC	GRCh37	12	11905391	11905391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	94	340	0	ENST00000396373.4:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000396373	NM_001987.4	14	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175466	112175466	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs786204170		P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	97	364	0	ENST00000257430.4:c.4175C>A	p.Ser1392Ter	p.S1392*	ENST00000257430	NM_000038.5	1392	tCa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112177901	112177901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	83	335	0	ENST00000257430.4:c.6610C>T	p.Arg2204Ter	p.R2204*	ENST00000257430	NM_000038.5	2204	Cga/Tga																																																																															
CDC73	79577	MSKCC	GRCh37	1	193094337	193094337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	98	393	0	ENST00000367435.3:c.227G>A	p.Arg76Gln	p.R76Q	ENST00000367435	NM_024529.4	76	cGa/cAa																																																																															
ATR	545	MSKCC	GRCh37	3	142178199	142178199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	64	290	0	ENST00000350721.4:c.7219C>T	p.Arg2407Cys	p.R2407C	ENST00000350721	NM_001184.3	2407	Cgc/Tgc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068393	26068393	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	87	353	0	ENST00000435504.4:c.97G>T	p.Glu33Ter	p.E33*	ENST00000435504		33	Gaa/Taa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	141	260	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112177203	112177203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	102	327	0	ENST00000257430.4:c.5912C>A	p.Ser1971Tyr	p.S1971Y	ENST00000257430	NM_000038.5	1971	tCt/tAt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56486794	56486794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	140	660	0	ENST00000267101.3:c.1208C>T	p.Pro403Leu	p.P403L	ENST00000267101	NM_001982.3	403	cCg/cTg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6031648	6031648	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116314131		P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	167	464	0	ENST00000265849.7:c.944G>A	p.Arg315Gln	p.R315Q	ENST00000265849	NM_000535.5	315	cGa/cAa																																																																															
BARD1	580	MSKCC	GRCh37	2	215595214	215595214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	73	316	0	ENST00000260947.4:c.1922G>A	p.Arg641Gln	p.R641Q	ENST00000260947	NM_000465.2	641	cGa/cAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710666	114710666	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	143	447	0	ENST00000543371.1:c.151G>T	p.Glu51Ter	p.E51*	ENST00000543371	NM_001198531.1	51	Gaa/Taa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21620099	21620099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	186	658	1	ENST00000382592.4:c.67C>T	p.Arg23Cys	p.R23C	ENST00000382592	NM_014572.2	23	Cgt/Tgt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285871	87285871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	155	486	0	ENST00000277120.3:c.208G>A	p.Glu70Lys	p.E70K	ENST00000277120		70	Gaa/Aaa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934931	9934931	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	90	404	0	ENST00000330684.3:c.1359G>T	p.Lys453Asn	p.K453N	ENST00000330684	NM_001134407.1	453	aaG/aaT																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931964	39931964	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	238	411	0	ENST00000378444.4:c.2635A>C	p.Ser879Arg	p.S879R	ENST00000378444	NM_001123385.1	879	Agc/Cgc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32903612	32903612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	45	308	0	ENST00000380152.3:c.664C>T	p.Pro222Ser	p.P222S	ENST00000380152		222	Cct/Tct																																																																															
CD276	80381	MSKCC	GRCh37	15	74000721	74000721	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150498569		P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	264	869	1	ENST00000318443.5:c.1411G>A	p.Val471Met	p.V471M	ENST00000318443	NM_001024736.1	471	Gtg/Atg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876188	35876188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	161	552	3	ENST00000303115.3:c.980C>T	p.Thr327Met	p.T327M	ENST00000303115	NM_002185.3	327	aCg/aTg																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2647140	2647140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	123	518	0	ENST00000342085.4:c.1418G>A	p.Arg473Gln	p.R473Q	ENST00000342085	NM_002613.4	473	cGa/cAa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641221	3641221	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	264	905	1	ENST00000294008.3:c.2418G>T	p.Glu806Asp	p.E806D	ENST00000294008	NM_032444.2	806	gaG/gaT																																																																															
EZH1	2145	MSKCC	GRCh37	17	40864422	40864422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	240	861	1	ENST00000428826.2:c.1286C>T	p.Ser429Leu	p.S429L	ENST00000428826		429	tCg/tTg																																																																															
STK40	83931	MSKCC	GRCh37	1	36820827	36820827	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	276	519	0	ENST00000373129.3:c.550G>C	p.Val184Leu	p.V184L	ENST00000373129	NM_032017.1	184	Gtg/Ctg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267291	41267291	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	118	437	0	ENST00000349496.5:c.875A>C	p.Lys292Thr	p.K292T	ENST00000349496	NM_001904.3	292	aAa/aCa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123229233	123229233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	93	171	0	ENST00000218089.9:c.3717G>T	p.Lys1239Asn	p.K1239N	ENST00000218089	NM_001042749.1	1239	aaG/aaT																																																																															
YES1	7525	MSKCC	GRCh37	18	736915	736915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	124	531	0	ENST00000314574.4:c.1184G>A	p.Arg395Gln	p.R395Q	ENST00000314574	NM_005433.3	395	cGa/cAa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277992	41277992	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	98	423	0	ENST00000349496.5:c.1954+2T>C		p.X652_splice	ENST00000349496	NM_001904.3	652																																																																																
PRDM1	639	MSKCC	GRCh37	6	106553117	106553117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	153	630	0	ENST00000369096.4:c.1082C>T	p.Ser361Phe	p.S361F	ENST00000369096	NM_001198.3	361	tCc/tTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624301	89624301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	207	640	0	ENST00000371953.3:c.75G>T	p.Leu25Phe	p.L25F	ENST00000371953	NM_000314.4	25	ttG/ttT																																																																															
IRF4	3662	MSKCC	GRCh37	6	394827	394827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	100	411	1	ENST00000380956.4:c.223G>T	p.Ala75Ser	p.A75S	ENST00000380956	NM_001195286.1	75	Gca/Tca																																																																															
TET1	80312	MSKCC	GRCh37	10	70333589	70333589	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	149	521	0	ENST00000373644.4:c.1494A>C	p.Glu498Asp	p.E498D	ENST00000373644	NM_030625.2	498	gaA/gaC																																																																															
WT1	7490	MSKCC	GRCh37	11	32417850	32417850	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	165	597	0	ENST00000332351.3:c.1202G>T	p.Arg401Ile	p.R401I	ENST00000332351	NM_024426.4	401	aGa/aTa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94192672	94192672	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	161	620	1	ENST00000323929.3:c.1402G>T	p.Asp468Tyr	p.D468Y	ENST00000323929	NM_005591.3	468	Gat/Tat																																																																															
KDM5A	5927	MSKCC	GRCh37	12	459846	459846	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	215	753	0	ENST00000399788.2:c.1249G>T	p.Asp417Tyr	p.D417Y	ENST00000399788	NM_001042603.1	417	Gac/Tac																																																																															
RAD52	5893	MSKCC	GRCh37	12	1034620	1034620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	145	523	1	ENST00000358495.3:c.539G>A	p.Arg180His	p.R180H	ENST00000358495	NM_134424.2	180	cGc/cAc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21630751	21630751	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	98	392	0	ENST00000421138.2:c.853A>C	p.Asn285His	p.N285H	ENST00000421138		285	Aat/Cat																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230764	46230764	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	67	306	0	ENST00000334344.6:c.1013T>G	p.Ile338Ser	p.I338S	ENST00000334344	NM_152641.2	338	aTt/aGt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56490286	56490286	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	69	342	0	ENST00000267101.3:c.2056-1G>T		p.X686_splice	ENST00000267101	NM_001982.3	686																																																																																
FLT1	2321	MSKCC	GRCh37	13	28979931	28979931	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	139	495	0	ENST00000282397.4:c.1537G>T	p.Glu513Ter	p.E513*	ENST00000282397	NM_002019.4	513	Gaa/Taa																																																																															
B2M	567	MSKCC	GRCh37	15	45007665	45007665	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	106	363	0	ENST00000558401.1:c.112G>T	p.Gly38Ter	p.G38*	ENST00000558401	NM_004048.2	38	Gga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992895	72992895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	214	735	0	ENST00000268489.5:c.1150G>A	p.Ala384Thr	p.A384T	ENST00000268489	NM_006885.3	384	Gcc/Acc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89882996	89882996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	76	157	1	ENST00000389301.3:c.28G>A	p.Ala10Thr	p.A10T	ENST00000389301	NM_000135.2	10	Gcc/Acc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968182	15968182	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	70	229	0	ENST00000268712.3:c.5101+2T>C		p.X1701_splice	ENST00000268712	NM_006311.3	1701																																																																																
CDK12	51755	MSKCC	GRCh37	17	37646817	37646817	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	37	359	0	ENST00000447079.4:c.1939G>T	p.Glu647Ter	p.E647*	ENST00000447079	NM_015083.1	647	Gaa/Taa																																																																															
EZH1	2145	MSKCC	GRCh37	17	40854581	40854581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	231	763	0	ENST00000428826.2:c.2213T>C	p.Val738Ala	p.V738A	ENST00000428826		738	gTg/gCg																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66518930	66518930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	123	367	0	ENST00000358598.2:c.211G>A	p.Ala71Thr	p.A71T	ENST00000358598	NM_212471.2	71	Gca/Aca																																																																															
ALK	238	MSKCC	GRCh37	2	29606619	29606619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	153	497	0	ENST00000389048.3:c.1261G>T	p.Ala421Ser	p.A421S	ENST00000389048	NM_004304.4	421	Gcc/Tcc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488646	212488646	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	106	390	0	ENST00000342788.4:c.2202+1G>A		p.X734_splice	ENST00000342788	NM_005235.2	734																																																																																
INHA	3623	MSKCC	GRCh37	2	220439577	220439577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	208	847	0	ENST00000243786.2:c.430G>A	p.Ala144Thr	p.A144T	ENST00000243786	NM_002191.3	144	Gcc/Acc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225368448	225368448	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	128	487	0	ENST00000264414.4:c.1298A>C	p.Lys433Thr	p.K433T	ENST00000264414	NM_003590.4	433	aAa/aCa																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750614	41750614	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	129	471	0	ENST00000226382.2:c.14A>C	p.Glu5Ala	p.E5A	ENST00000226382	NM_003924.3	5	gAa/gCa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67590501	67590501	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	72	229	2	ENST00000274335.5:c.1563A>G	p.Ile521Met	p.I521M	ENST00000274335		521	atA/atG																																																																															
RASA1	5921	MSKCC	GRCh37	5	86633810	86633810	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	53	255	0	ENST00000274376.6:c.919T>C	p.Phe307Leu	p.F307L	ENST00000274376	NM_002890.2	307	Ttc/Ctc																																																																															
APC	324	MSKCC	GRCh37	5	112090610	112090610	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	90	281	0	ENST00000257430.4:c.23A>G	p.Gln8Arg	p.Q8R	ENST00000257430	NM_000038.5	8	cAg/cGg																																																																															
NPM1	4869	MSKCC	GRCh37	5	170832333	170832333	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	113	457	0	ENST00000296930.5:c.697A>C	p.Lys233Gln	p.K233Q	ENST00000296930	NM_002520.6	233	Aaa/Caa																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793850	89793850	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	143	431	0	ENST00000336032.3:c.919A>C	p.Asn307His	p.N307H	ENST00000336032	NM_006813.2	307	Aat/Cat																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956562	93956562	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	99	385	0	ENST00000369303.4:c.2674A>C	p.Lys892Gln	p.K892Q	ENST00000369303	NM_004440.3	892	Aaa/Caa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033273	69033273	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	118	411	0	ENST00000288368.4:c.3713A>G	p.Lys1238Arg	p.K1238R	ENST00000288368	NM_024870.2	1238	aAa/aGa																																																																															
NBN	4683	MSKCC	GRCh37	8	90994993	90994993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	116	410	1	ENST00000265433.3:c.128G>A	p.Arg43Gln	p.R43Q	ENST00000265433	NM_002485.4	43	cGa/cAa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969399	44969399	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	177	276	0	ENST00000377967.4:c.4081T>G	p.Cys1361Gly	p.C1361G	ENST00000377967	NM_021140.2	1361	Tgt/Ggt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0051779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	65	293	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0051779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	160	505	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175606	112175606	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	114	277	0	ENST00000257430.4:c.4316del	p.Pro1439LeufsTer34	p.P1439Lfs*34	ENST00000257430	NM_000038.5	1439	Cct/ct																																																																															
CARM1	10498	MSKCC	GRCh37	19	11019832	11019832	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0051779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	206	430	0	ENST00000327064.4:c.507del	p.Gly170AlafsTer57	p.G170Afs*57	ENST00000327064	NM_199141.1	169	acA/ac																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0051780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	120	290	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0051780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	111	357	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	258	710	0	ENST00000269305.4:c.451C>G	p.Pro151Ala	p.P151A	ENST00000269305	NM_001126112.2	151	Ccc/Gcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0051780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	116	311	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175750	112175750	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0051780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	111	285	0	ENST00000257430.4:c.4459del	p.Thr1487LeufsTer20	p.T1487Lfs*20	ENST00000257430	NM_000038.5	1487	Act/ct																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098521	11098521	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	79	493	0	ENST00000344626.4:c.1039C>T	p.Gln347Ter	p.Q347*	ENST00000344626	NM_003072.3	347	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	60	318	3	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288989	212288989	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	79	355	0	ENST00000342788.4:c.2757A>C	p.Lys919Asn	p.K919N	ENST00000342788	NM_005235.2	919	aaA/aaC																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534407	63534407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	130	571	0	ENST00000307078.5:c.1114G>A	p.Ala372Thr	p.A372T	ENST00000307078	NM_004655.3	372	Gct/Act																																																																															
BARD1	580	MSKCC	GRCh37	2	215593435	215593435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	62	238	0	ENST00000260947.4:c.2299G>A	p.Val767Met	p.V767M	ENST00000260947	NM_000465.2	767	Gtg/Atg																																																																															
CRKL	1399	MSKCC	GRCh37	22	21304042	21304051	+	frameshift_variant	Frame_Shift_Del	DEL	AGTGGGAAGG	AGTGGGAAGG	TT			P-0051780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	62	358	0	ENST00000354336.3:c.821_830delinsTT	p.Gln274LeufsTer19	p.Q274Lfs*19	ENST00000354336	NM_005207.3	274	cAGTGGGAAGGc/cTTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	130	370	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	112	262	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	384	702	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256768	19256769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1202792889		P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	95	775	0	ENST00000162023.5:c.944dup	p.Val316SerfsTer6	p.V316Sfs*6	ENST00000162023		315	cca/ccCa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	169	371	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023909	27023923	+	inframe_deletion	In_Frame_Del	DEL	GCTGCGGCGGCGGCA	GCTGCGGCGGCGGCA	-	rs751352361		P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	41	99	0	ENST00000324856.7:c.1029_1043del	p.Ala345_Ala349del	p.A345_A349del	ENST00000324856	NM_006015.4	339	GCTGCGGCGGCGGCA/-																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467646	66467646	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	73	359	0	ENST00000273854.3:c.623del	p.Lys208ArgfsTer60	p.K208Rfs*60	ENST00000273854	NM_004439.5	208	aAg/ag																																																																															
ALK	238	MSKCC	GRCh37	2	29449800	29449800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs76742576		P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	270	885	2	ENST00000389048.3:c.3055G>A	p.Val1019Ile	p.V1019I	ENST00000389048	NM_004304.4	1019	Gtc/Atc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	130	345	8	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	169	625	12	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984782	11984782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1164096095		P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	48	388	0	ENST00000353533.5:c.328C>T	p.Arg110Ter	p.R110*	ENST00000353533	NM_003010.3	110	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762108866		P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	140	477	2	ENST00000268489.5:c.10215dup	p.Gly3406ArgfsTer25	p.G3406Rfs*25	ENST00000268489	NM_006885.3	3405	-/C																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882050	36882050	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	203	769	3	ENST00000358127.4:c.963del	p.Ala322LeufsTer11	p.A322Lfs*11	ENST00000358127	NM_001280556.1	321	ccC/cc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370236	40370236	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764965457		P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	128	780	12	ENST00000293328.3:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000293328	NM_012448.3	368	Cag/ag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	139	424	8	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371684	55371684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	210	635	2	ENST00000297316.4:c.374G>A	p.Arg125His	p.R125H	ENST00000297316	NM_022454.3	125	cGc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099579	157099579	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	28	106	2	ENST00000346085.5:c.521del	p.Pro174ArgfsTer6	p.P174Rfs*6	ENST00000346085	NM_020732.3	172	gaC/ga																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375194	31375194	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	229	800	1	ENST00000328111.2:c.596del	p.Gly199AlafsTer27	p.G199Afs*27	ENST00000328111	NM_006892.3	197	caG/ca																																																																															
VHL	7428	MSKCC	GRCh37	3	10188309	10188309	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	195	477	0	ENST00000256474.2:c.452T>A	p.Ile151Asn	p.I151N	ENST00000256474	NM_000551.3	151	aTc/aAc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563349	21563349	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	207	961	0	ENST00000382592.4:c.570del	p.Tyr191ThrfsTer49	p.Y191Tfs*49	ENST00000382592	NM_014572.2	190	ccC/cc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384650	31384651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756395138		P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	190	606	0	ENST00000328111.2:c.1359dup	p.Leu454AlafsTer11	p.L454Afs*11	ENST00000328111	NM_006892.3	451	gag/gaGg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	176	448	0	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	226	423	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	123	650	6	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9778917	9778917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	186	664	0	ENST00000377346.4:c.1186G>A	p.Ala396Thr	p.A396T	ENST00000377346	NM_005026.3	396	Gcc/Acc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953258	81953258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	89	243	0	ENST00000359376.3:c.2224C>T	p.Arg742Cys	p.R742C	ENST00000359376	NM_002661.3	742	Cgc/Tgc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646980	23646981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1060502767		P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	233	555	0	ENST00000261584.4:c.886dup	p.Met296AsnfsTer7	p.M296Nfs*7	ENST00000261584	NM_024675.3	296	atg/aAtg																																																																															
FYN	2534	MSKCC	GRCh37	6	111983091	111983091	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	199	632	0	ENST00000368678.4:c.1456C>T	p.Gln486Ter	p.Q486*	ENST00000368678		486	Cag/Tag																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806605	1806605	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17884368		P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	219	806	0	ENST00000260795.2:c.1321G>A	p.Ala441Thr	p.A441T	ENST00000260795		441	Gca/Aca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21994302	21994302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	183	619	2	ENST00000361570.3:c.152G>A	p.Arg51Gln	p.R51Q	ENST00000361570	NM_058195.3	51	cGg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859859	151859859	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	38	359	0	ENST00000262189.6:c.10803del	p.Lys3604ArgfsTer26	p.K3604Rfs*26	ENST00000262189	NM_170606.2	3601	aaA/aa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40710607	40710607	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	227	568	2	ENST00000373198.4:c.4244A>T	p.Glu1415Val	p.E1415V	ENST00000373198	NM_133170.3	1415	gAg/gTg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526792	31526792	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	171	557	0	ENST00000344624.3:c.248del	p.Pro83HisfsTer25	p.P83Hfs*25	ENST00000344624		83	cCa/ca																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128305365	128305365	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	430	504	0	ENST00000265960.3:c.931C>T	p.Arg311Ter	p.R311*	ENST00000265960	NM_001006617.1	311	Cga/Tga																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599885	28599885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	170	521	0	ENST00000253063.3:c.767G>A	p.Arg256His	p.R256H	ENST00000253063	NM_031459.4	256	cGc/cAc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223820	53223820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	225	891	1	ENST00000375401.3:c.3539C>T	p.Thr1180Met	p.T1180M	ENST00000375401	NM_004187.3	1180	aCg/aTg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450351	50450351	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	101	559	0	ENST00000331340.3:c.535A>G	p.Asn179Asp	p.N179D	ENST00000331340	NM_006060.4	179	Aac/Gac																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199450	16199450	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200367310		P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	139	344	0	ENST00000375759.3:c.223C>T	p.Arg75Cys	p.R75C	ENST00000375759	NM_015001.2	75	Cgc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259877	16259878	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	173	558	0	ENST00000375759.3:c.7143dup	p.Gln2382ThrfsTer7	p.Q2382Tfs*7	ENST00000375759	NM_015001.2	2381	cca/ccAa																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46724401	46724401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	172	354	0	ENST00000371975.4:c.254C>A	p.Pro85His	p.P85H	ENST00000371975	NM_003579.3	85	cCc/cAc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46740337	46740337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	170	483	1	ENST00000371975.4:c.1817G>A	p.Arg606Gln	p.R606Q	ENST00000371975	NM_003579.3	606	cGg/cAg																																																																															
RET	5979	MSKCC	GRCh37	10	43619193	43619193	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745650861		P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	175	580	2	ENST00000355710.3:c.2876G>A	p.Arg959Gln	p.R959Q	ENST00000355710	NM_020975.4	959	cGg/cAg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998943	100998943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	204	813	2	ENST00000325455.5:c.859G>A	p.Ala287Thr	p.A287T	ENST00000325455	NM_001202474.3	287	Gcg/Acg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396657	30396657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	18	48	0	ENST00000331968.5:c.62C>T	p.Ala21Val	p.A21V	ENST00000331968	NM_002742.2	21	gCc/gTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831201	72831201	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	142	509	0	ENST00000268489.5:c.5380C>G	p.Gln1794Glu	p.Q1794E	ENST00000268489	NM_006885.3	1794	Cag/Gag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991824	72991824	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	250	586	0	ENST00000268489.5:c.2221C>A	p.Leu741Ile	p.L741I	ENST00000268489	NM_006885.3	741	Ctc/Atc																																																																															
NF1	4763	MSKCC	GRCh37	17	29663381	29663381	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	173	349	0	ENST00000358273.4:c.6037A>G	p.Ser2013Gly	p.S2013G	ENST00000358273	NM_001042492.2	2013	Agt/Ggt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619169	37619169	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	187	529	0	ENST00000447079.4:c.845C>A	p.Pro282His	p.P282H	ENST00000447079	NM_015083.1	282	cCt/cAt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78921042	78921042	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	159	589	0	ENST00000306801.3:c.3156G>T	p.Glu1052Asp	p.E1052D	ENST00000306801	NM_020761.2	1052	gaG/gaT																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10246525	10246525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	184	688	0	ENST00000340748.4:c.4612C>T	p.Arg1538Cys	p.R1538C	ENST00000340748		1538	Cgc/Tgc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158617508	158617508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	134	415	1	ENST00000263640.3:c.1148C>T	p.Ala383Val	p.A383V	ENST00000263640	NM_001105.4	383	gCc/gTc																																																																															
EP300	2033	MSKCC	GRCh37	22	41573497	41573497	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	228	703	0	ENST00000263253.7:c.5782A>G	p.Met1928Val	p.M1928V	ENST00000263253	NM_001429.3	1928	Atg/Gtg																																																																															
VHL	7428	MSKCC	GRCh37	3	10183583	10183583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	221	810	2	ENST00000256474.2:c.52G>A	p.Ala18Thr	p.A18T	ENST00000256474	NM_000551.3	18	Gca/Aca																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185165695	185165695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	143	321	0	ENST00000265026.3:c.970G>A	p.Val324Met	p.V324M	ENST00000265026	NM_004721.4	324	Gtg/Atg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144610	55144610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	144	351	0	ENST00000257290.5:c.2084G>T	p.Ser695Ile	p.S695I	ENST00000257290	NM_006206.4	695	aGc/aTc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800228	32800228	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	123	397	0	ENST00000374899.4:c.1154T>C	p.Leu385Ser	p.L385S	ENST00000374899	NM_018833.2	385	tTg/tCg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001412	150001412	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	197	440	0	ENST00000253339.5:c.2192A>G	p.Tyr731Cys	p.Y731C	ENST00000253339		731	tAt/tGt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396484	139396484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	213	748	0	ENST00000277541.6:c.5441G>A	p.Gly1814Glu	p.G1814E	ENST00000277541	NM_017617.3	1814	gGg/gAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041625	47041625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	184	674	0	ENST00000329236.7:c.1616C>T	p.Pro539Leu	p.P539L	ENST00000329236	NM_001204466.1	539	cCc/cTc																																																																															
MED12	9968	MSKCC	GRCh37	X	70344848	70344848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	163	557	0	ENST00000374080.3:c.2078G>A	p.Cys693Tyr	p.C693Y	ENST00000374080		693	tGt/tAt																																																																															
BTK	695	MSKCC	GRCh37	X	100629548	100629549	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs886041148		P-0051805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	190	550	0	ENST00000308731.7:c.215dup	p.Asn72LysfsTer13	p.N72Kfs*13	ENST00000308731	NM_000061.2	72	aat/aaAt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0051970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	86	260	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0051970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	118	323	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0051970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	211	612	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411276	63411276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	415	860	0	ENST00000330258.3:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000330258	NM_152424.3	631	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604721	48604721	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	171	534	0	ENST00000342988.3:c.1543A>G	p.Arg515Gly	p.R515G	ENST00000342988	NM_005359.5	515	Aga/Gga																																																																															
APC	324	MSKCC	GRCh37	5	112174025	112174025	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0051970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	144	400	0	ENST00000257430.4:c.2735del	p.Leu912TyrfsTer4	p.L912Yfs*4	ENST00000257430	NM_000038.5	912	Tta/ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0052134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	294	772	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0052134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	177	661	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112173668	112173668	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	61	403	0	ENST00000257430.4:c.2377C>T	p.Gln793Ter	p.Q793*	ENST00000257430	NM_000038.5	793	Caa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604784	48604784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	199	431	0	ENST00000342988.3:c.1606C>A	p.Leu536Ile	p.L536I	ENST00000342988	NM_005359.5	536	Cta/Ata																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187845	11187845	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	193	520	0	ENST00000361445.4:c.6052C>T	p.Arg2018Ter	p.R2018*	ENST00000361445	NM_004958.3	2018	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925318	114925318	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	173	517	0	ENST00000543371.1:c.1396A>G	p.Lys466Glu	p.K466E	ENST00000543371	NM_001198531.1	466	Aaa/Gaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	64	314	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0052197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	92	479	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912181	114912181	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	140	632	0	ENST00000543371.1:c.1251G>T	p.Trp417Cys	p.W417C	ENST00000543371	NM_001198531.1	417	tgG/tgT																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244214	153244214	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	131	462	0	ENST00000281708.4:c.1943T>G	p.Leu648Arg	p.L648R	ENST00000281708	NM_033632.3	648	cTa/cGa																																																																															
APC	324	MSKCC	GRCh37	5	112175057	112175057	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	38	228	0	ENST00000257430.4:c.3766C>T	p.Gln1256Ter	p.Q1256*	ENST00000257430	NM_000038.5	1256	Caa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101135	27101135	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	132	854	0	ENST00000324856.7:c.4417C>T	p.Gln1473Ter	p.Q1473*	ENST00000324856	NM_006015.4	1473	Cag/Tag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375090	118375090	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0052197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	90	449	0	ENST00000534358.1:c.8483A>T	p.Asn2828Ile	p.N2828I	ENST00000534358	NM_005933.3	2828	aAt/aTt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120381	70120382	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0052197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	365	942	0	ENST00000245479.2:c.1386_1387dup	p.Tyr463SerfsTer8	p.Y463Sfs*8	ENST00000245479	NM_000346.3	461	-/CT																																																																															
SOS1	6654	MSKCC	GRCh37	2	39250293	39250293	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	159	743	0	ENST00000402219.2:c.1276C>G	p.Gln426Glu	p.Q426E	ENST00000402219	NM_005633.3	426	Cag/Gag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670443	134670444	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0052197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	99	632	0	ENST00000398015.3:c.356_357del	p.Ser119CysfsTer12	p.S119Cfs*12	ENST00000398015	NM_004441.4	118	gaCTct/gact																																																																															
APC	324	MSKCC	GRCh37	5	112175337	112176043	+	frameshift_variant	Frame_Shift_Del	DEL	ACAAAGCTGTTGAATTTTCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTATGTTCAGGAGACCCCACTCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAGTCGTTCGATTGCCAGCTCCGTTCAGAGTGAACCATGCAGTGGAATGGTAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACAAACCATGCCACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCTTGTTCATCCAGCCTGAGTGCTCTGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGGAATGAAACAGAATCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCA	ACAAAGCTGTTGAATTTTCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTATGTTCAGGAGACCCCACTCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAGTCGTTCGATTGCCAGCTCCGTTCAGAGTGAACCATGCAGTGGAATGGTAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACAAACCATGCCACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCTTGTTCATCCAGCCTGAGTGCTCTGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGGAATGAAACAGAATCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCA	-			P-0052197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	65	273	0	ENST00000257430.4:c.4052_4758del	p.Ala1351ValfsTer4	p.A1351Vfs*4	ENST00000257430	NM_000038.5	1349	cACAAAGCTGTTGAATTTTCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTATGTTCAGGAGACCCCACTCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAGTCGTTCGATTGCCAGCTCCGTTCAGAGTGAACCATGCAGTGGAATGGTAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACAAACCATGCCACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCTTGTTCATCCAGCCTGAGTGCTCTGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGGAATGAAACAGAATCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCA/c																																																																															
APC	324	MSKCC	GRCh37	5	112176087	112176098	+	inframe_deletion	In_Frame_Del	DEL	CAAAATTACCTC	CAAAATTACCTC	-			P-0052197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	92	440	0	ENST00000257430.4:c.4798_4809del	p.Lys1600_Pro1603del	p.K1600_P1603del	ENST00000257430	NM_000038.5	1599	tCAAAATTACCTCca/tca																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324907	31324908	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0052197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	175	1124	0	ENST00000412585.2:c.28dup	p.Leu10ProfsTer89	p.L10Pfs*89	ENST00000412585	NM_005514.6	10	ctc/cCtc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859801	151859801	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	64	438	0	ENST00000262189.6:c.10861del	p.Ala3621LeufsTer9	p.A3621Lfs*9	ENST00000262189	NM_170606.2	3621	Gct/ct																																																																															
ATRX	546	MSKCC	GRCh37	X	76812944	76812944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	107	311	0	ENST00000373344.5:c.6677G>A	p.Arg2226Lys	p.R2226K	ENST00000373344	NM_000489.3	2226	aGg/aAg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	104	391	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	222	869	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	210	786	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	189	676	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	58	183	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	229	937	14	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	92	320	2	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
ARAF	369	MSKCC	GRCh37	X	47422384	47422384	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	148	554	1	ENST00000377045.4:c.23del	p.Pro8LeufsTer26	p.P8Lfs*26	ENST00000377045	NM_001654.4	6	ggC/gg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426812	121426812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	208	610	1	ENST00000257555.6:c.503G>A	p.Arg168His	p.R168H	ENST00000257555		168	cGc/cAc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	150	482	0	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528525	157528525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	173	579	0	ENST00000346085.5:c.6250G>A	p.Glu2084Lys	p.E2084K	ENST00000346085	NM_020732.3	2084	Gag/Aag																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158633	26158633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	75	264	0	ENST00000289316.2:c.236C>T	p.Ser79Phe	p.S79F	ENST00000289316	NM_138720.2	79	tCc/tTc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	201	776	1	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222796	5222796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	186	803	2	ENST00000357368.4:c.3007G>A	p.Asp1003Asn	p.D1003N	ENST00000357368	NM_002850.3	1003	Gac/Aac																																																																															
EP300	2033	MSKCC	GRCh37	22	41574391	41574391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	117	707	0	ENST00000263253.7:c.6676C>T	p.Arg2226Trp	p.R2226W	ENST00000263253	NM_001429.3	2226	Cgg/Tgg																																																																															
RARA	5914	MSKCC	GRCh37	17	38512370	38512370	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	120	584	2	ENST00000254066.5:c.1286del	p.Gly429ValfsTer214	p.G429Vfs*214	ENST00000254066	NM_000964.3	427	ccG/cc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135100	11135100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	226	952	0	ENST00000344626.4:c.3067G>A	p.Glu1023Lys	p.E1023K	ENST00000344626	NM_003072.3	1023	Gag/Aag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	121	306	2	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	164	313	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71102918	71102918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148369068		P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	106	310	0	ENST00000318789.4:c.289G>A	p.Val97Met	p.V97M	ENST00000318789	NM_032682.5	97	Gtg/Atg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976484	18976484	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140671518		P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	286	1048	2	ENST00000262803.5:c.3134C>T	p.Ala1045Val	p.A1045V	ENST00000262803	NM_002911.3	1045	gCg/gTg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998128	169998128	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs753143066		P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	167	428	1	ENST00000295797.4:c.826del	p.Thr276GlnfsTer7	p.T276Qfs*7	ENST00000295797	NM_002740.5	273	ttA/tt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948747	71948748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs760925109		P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	200	1061	12	ENST00000298229.2:c.3466dup	p.Arg1156ProfsTer59	p.R1156Pfs*59	ENST00000298229	NM_001567.3	1153	-/C																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581330	48581330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	139	482	0	ENST00000342988.3:c.634G>A	p.Ala212Thr	p.A212T	ENST00000342988	NM_005359.5	212	Gcc/Acc																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128246731	128246731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	166	522	0	ENST00000265960.3:c.1198G>A	p.Val400Ile	p.V400I	ENST00000265960	NM_001006617.1	400	Gta/Ata																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11107184	11107186	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs1484395538		P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	177	702	0	ENST00000344626.4:c.1778_1780del	p.Glu593del	p.E593del	ENST00000344626	NM_003072.3	592	gcAGAa/gca																																																																															
B2M	567	MSKCC	GRCh37	15	45003773	45003773	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	177	687	0	ENST00000558401.1:c.29T>C	p.Leu10Pro	p.L10P	ENST00000558401	NM_004048.2	10	cTc/cCc																																																																															
FYN	2534	MSKCC	GRCh37	6	112041092	112041092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	154	553	0	ENST00000368678.4:c.163G>A	p.Ala55Thr	p.A55T	ENST00000368678		55	Gca/Aca																																																																															
RAD50	10111	MSKCC	GRCh37	5	131911487	131911487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	75	297	0	ENST00000265335.6:c.232G>A	p.Val78Met	p.V78M	ENST00000265335		78	Gtg/Atg																																																																															
ATM	472	MSKCC	GRCh37	11	108159797	108159797	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	34	124	1	ENST00000278616.4:c.4207del	p.Ser1403AlafsTer3	p.S1403Afs*3	ENST00000278616	NM_000051.3	1401	ttA/tt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089462	27089462	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	160	741	1	ENST00000324856.7:c.2420-2A>G		p.X807_splice	ENST00000324856	NM_006015.4	807																																																																																
XIAP	331	MSKCC	GRCh37	X	123019779	123019779	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	167	560	0	ENST00000355640.3:c.267T>A	p.Asn89Lys	p.N89K	ENST00000355640		89	aaT/aaA																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261656	16261656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	169	605	0	ENST00000375759.3:c.8921A>G	p.Gln2974Arg	p.Q2974R	ENST00000375759	NM_015001.2	2974	cAg/cGg																																																																															
FH	2271	MSKCC	GRCh37	1	241676979	241676979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	140	434	0	ENST00000366560.3:c.302G>A	p.Arg101Gln	p.R101Q	ENST00000366560	NM_000143.3	101	cGa/cAa																																																																															
TET1	80312	MSKCC	GRCh37	10	70360784	70360784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	68	177	0	ENST00000373644.4:c.1964del	p.Leu655Ter	p.L655*	ENST00000373644	NM_030625.2	654	gTt/gt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64574555	64574555	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	212	805	1	ENST00000337652.1:c.855A>T	p.Leu285Phe	p.L285F	ENST00000337652	NM_130803.2	285	ttA/ttT																																																																															
KDM5A	5927	MSKCC	GRCh37	12	419071	419071	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	97	404	1	ENST00000399788.2:c.3276del	p.Val1093Ter	p.V1093*	ENST00000399788	NM_001042603.1	1092	aaA/aa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73335586	73335586	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	64	215	0	ENST00000377767.4:c.2585T>C	p.Val862Ala	p.V862A	ENST00000377767	NM_014953.3	862	gTa/gCa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527811	103527811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	94	301	0	ENST00000355739.4:c.3119C>T	p.Ala1040Val	p.A1040V	ENST00000355739	NM_000123.3	1040	gCc/gTc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422181	81422181	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	168	576	0	ENST00000298171.2:c.157A>C	p.Ser53Arg	p.S53R	ENST00000298171	NM_000369.2	53	Agt/Cgt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99454654	99454654	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201778894		P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	156	551	2	ENST00000268035.6:c.1573G>A	p.Val525Ile	p.V525I	ENST00000268035	NM_000875.3	525	Gtt/Att																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274201	10274201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	148	563	0	ENST00000330684.3:c.68C>T	p.Pro23Leu	p.P23L	ENST00000330684	NM_001134407.1	23	cCg/cTg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56871584	56871584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	173	547	0	ENST00000308159.5:c.1964C>T	p.Ala655Val	p.A655V	ENST00000308159	NM_014669.4	655	gCc/gTc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67650677	67650677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	173	548	0	ENST00000264010.4:c.982G>A	p.Asp328Asn	p.D328N	ENST00000264010	NM_006565.3	328	Gac/Aac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829124	72829124	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	177	582	0	ENST00000268489.5:c.7457A>G	p.Gln2486Arg	p.Q2486R	ENST00000268489	NM_006885.3	2486	cAa/cGa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993944	72993944	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	217	901	0	ENST00000268489.5:c.101A>G	p.Asp34Gly	p.D34G	ENST00000268489	NM_006885.3	34	gAc/gGc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351929	89351929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	266	868	4	ENST00000301030.4:c.1021G>A	p.Ala341Thr	p.A341T	ENST00000301030	NM_001256183.1	341	Gcc/Acc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870011	40870011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	97	505	0	ENST00000428826.2:c.1006G>A	p.Asp336Asn	p.D336N	ENST00000428826		336	Gac/Aac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15295221	15295221	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	256	997	0	ENST00000263388.2:c.2451del	p.Ala818HisfsTer42	p.A818Hfs*42	ENST00000263388	NM_000435.2	817	ccC/cc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47641556	47641556	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	37	148	0	ENST00000233146.2:c.941A>T	p.Gln314Leu	p.Q314L	ENST00000233146	NM_000251.2	314	cAg/cTg																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872794	136872794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	138	499	0	ENST00000241393.3:c.704G>A	p.Arg235His	p.R235H	ENST00000241393	NM_003467.2	235	cGc/cAc																																																																															
BARD1	580	MSKCC	GRCh37	2	215645496	215645496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	157	552	0	ENST00000260947.4:c.1102T>C	p.Cys368Arg	p.C368R	ENST00000260947	NM_000465.2	368	Tgc/Cgc																																																																															
SRC	6714	MSKCC	GRCh37	20	36012681	36012681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	57	189	0	ENST00000358208.4:c.125C>A	p.Ala42Asp	p.A42D	ENST00000358208		42	gCc/gAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161847	47161850	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	39	360	0	ENST00000409792.3:c.4276_4279del	p.Lys1426LeufsTer5	p.K1426Lfs*5	ENST00000409792	NM_014159.6	1426	AAAGtt/tt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185183549	185183549	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	125	434	1	ENST00000265026.3:c.1403T>A	p.Ile468Asn	p.I468N	ENST00000265026	NM_004721.4	468	aTt/aAt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680934	30680934	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	179	636	1	ENST00000376406.3:c.785A>G	p.Gln262Arg	p.Q262R	ENST00000376406	NM_014641.2	262	cAg/cGg																																																																															
FYN	2534	MSKCC	GRCh37	6	112025211	112025211	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	158	422	0	ENST00000368678.4:c.538A>G	p.Thr180Ala	p.T180A	ENST00000368678		180	Acc/Gcc																																																																															
MYC	4609	MSKCC	GRCh37	8	128753038	128753038	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	158	480	0	ENST00000377970.2:c.1199A>T	p.Glu400Val	p.E400V	ENST00000377970	NM_002467.4	400	gAa/gTa																																																																															
TEK	7010	MSKCC	GRCh37	9	27209169	27209169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	135	437	0	ENST00000380036.4:c.2626C>T	p.Leu876Phe	p.L876F	ENST00000380036	NM_000459.3	876	Ctt/Ttt																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152864433	152864433	+	synonymous_variant	Silent	SNP	G	G	A			P-0052250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	45	161	0	ENST00000406277.2:c.93C>T	p.Phe31=	p.F31=	ENST00000406277	NM_152274.4	31	ttC/ttT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0052269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	249	613	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0052269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	122	346	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986751	36986751	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	21	75	0	ENST00000354822.5:c.938A>G	p.Gln313Arg	p.Q313R	ENST00000354822	NM_001079668.2	313	cAa/cGa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356177	66356177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	66	581	1	ENST00000273854.3:c.1320G>T	p.Glu440Asp	p.E440D	ENST00000273854	NM_004439.5	440	gaG/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	182	608	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0052270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	271	802	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920402	114920402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	173	478	0	ENST00000543371.1:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000543371	NM_001198531.1	448	cGg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259485	55259485	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148934350		P-0052270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	334	566	0	ENST00000275493.2:c.2543C>T	p.Pro848Leu	p.P848L	ENST00000275493	NM_005228.3	848	cCg/cTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099406	157099426	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAGCAA	CAGCAGCAGCAGCAGCAGCAA	-	rs775084783		P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	66	266	0	ENST00000346085.5:c.363_383del	p.Gln125_Gln131del	p.Q125_Q131del	ENST00000346085	NM_020732.3	115	CAGCAGCAGCAGCAGCAGCAA/-																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	104	320	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	72	204	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	78	283	0	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	261	667	10	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
APC	324	MSKCC	GRCh37	5	112175000	112175000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	70	148	0	ENST00000257430.4:c.3709C>T	p.Gln1237Ter	p.Q1237*	ENST00000257430	NM_000038.5	1237	Cag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	35	459	1	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291083	10291084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755889652		P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	253	527	5	ENST00000340748.4:c.387dup	p.Lys130GlnfsTer19	p.K130Qfs*19	ENST00000340748		129	-/C																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969884	81969884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199840870		P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	89	472	0	ENST00000359376.3:c.2953G>A	p.Val985Ile	p.V985I	ENST00000359376	NM_002661.3	985	Gtc/Atc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286237	66286238	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	86	302	0	ENST00000273854.3:c.1448dup	p.Asn483LysfsTer21	p.N483Kfs*21	ENST00000273854	NM_004439.5	483	aac/aaAc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264985	46264985	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	169	376	0	ENST00000371998.3:c.1860del	p.Lys620AsnfsTer18	p.K620Nfs*18	ENST00000371998		619	Aaa/aa																																																																															
B2M	567	MSKCC	GRCh37	15	45003782	45003782	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	203	442	0	ENST00000558401.1:c.38T>G	p.Leu13Arg	p.L13R	ENST00000558401	NM_004048.2	13	cTc/cGc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187527264	187527264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	212	372	0	ENST00000441802.2:c.10310C>T	p.Ala3437Val	p.A3437V	ENST00000441802	NM_005245.3	3437	gCg/gTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	127	415	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	143	418	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	241	633	4	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733512	85733513	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs387906350		P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	134	372	1	ENST00000370580.1:c.499dup	p.Ser167PhefsTer3	p.S167Ffs*3	ENST00000370580	NM_003921.4	167	tct/tTct																																																																															
NF1	4763	MSKCC	GRCh37	17	29592336	29592336	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	119	322	0	ENST00000358273.4:c.4819del	p.Tyr1607IlefsTer17	p.Y1607Ifs*17	ENST00000358273	NM_001042492.2	1605	aTt/at																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348031	348031	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765982081		P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	256	856	2	ENST00000262320.3:c.1475G>A	p.Arg492His	p.R492H	ENST00000262320	NM_003502.3	492	cGc/cAc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056331	26056333	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs762045774		P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	167	382	0	ENST00000343677.2:c.324_326del	p.Asn108del	p.N108del	ENST00000343677	NM_005319.3	108	aaCAAg/aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199600	16199600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	158	419	0	ENST00000375759.3:c.373C>T	p.Arg125Ter	p.R125*	ENST00000375759	NM_015001.2	125	Cga/Tga																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115273187	115273187	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	170	392	0	ENST00000438362.2:c.1271A>T	p.Glu424Val	p.E424V	ENST00000438362	NM_001242891.1	424	gAa/gTa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870946	12870947	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	120	298	0	ENST00000228872.4:c.174dup	p.Lys59GlnfsTer66	p.K59Qfs*66	ENST00000228872	NM_004064.3	58	cgc/cgCc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26967647	26967647	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	99	271	0	ENST00000381527.3:c.790G>T	p.Asp264Tyr	p.D264Y	ENST00000381527	NM_001260.1	264	Gat/Tat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845521	72845521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	241	510	0	ENST00000268489.5:c.3819C>A	p.His1273Gln	p.H1273Q	ENST00000268489	NM_006885.3	1273	caC/caA																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5240310	5240310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	301	721	0	ENST00000357368.4:c.1604C>T	p.Ala535Val	p.A535V	ENST00000357368	NM_002850.3	535	gCc/gTc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99180101	99180101	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	227	433	0	ENST00000074304.5:c.2043+1G>A		p.X681_splice	ENST00000074304	NM_001134224.1	681																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52595852	52595852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	260	445	0	ENST00000394830.3:c.4063G>A	p.Gly1355Arg	p.G1355R	ENST00000394830	NM_018313.4	1355	Ggg/Agg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643352	52643353	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	94	278	0	ENST00000394830.3:c.2543dup	p.Leu848PhefsTer16	p.L848Ffs*16	ENST00000394830	NM_018313.4	848	ttg/ttTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549512	187549512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	133	312	0	ENST00000441802.2:c.4606G>A	p.Asp1536Asn	p.D1536N	ENST00000441802	NM_005245.3	1536	Gat/Aat																																																																															
SDHA	6389	MSKCC	GRCh37	5	226044	226044	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	30	70	0	ENST00000264932.6:c.503T>C	p.Ile168Thr	p.I168T	ENST00000264932	NM_004168.2	168	aTt/aCt																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137527296	137527297	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	161	468	0	ENST00000367739.4:c.349_350del	p.Glu117ArgfsTer14	p.E117Rfs*14	ENST00000367739	NM_000416.2	117	GAa/a																																																																															
ABL1	25	MSKCC	GRCh37	9	133759511	133759511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	165	644	0	ENST00000318560.5:c.1834C>T	p.Pro612Ser	p.P612S	ENST00000318560	NM_005157.4	612	Cca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0052364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	343	832	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0052364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	296	680	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0052364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	257	426	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038526	47038526	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	431	961	1	ENST00000329236.7:c.457C>T	p.Arg153Ter	p.R153*	ENST00000329236	NM_001204466.1	153	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187188	11187188	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	396	764	0	ENST00000361445.4:c.6230A>T	p.Asp2077Val	p.D2077V	ENST00000361445	NM_004958.3	2077	gAt/gTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247169	153247169	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	431	414	0	ENST00000281708.4:c.1633T>G	p.Tyr545Asp	p.Y545D	ENST00000281708	NM_033632.3	545	Tat/Gat																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867431	35867431	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	207	551	0	ENST00000303115.3:c.245G>T	p.Cys82Phe	p.C82F	ENST00000303115	NM_002185.3	82	tGc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112175556	112175556	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	220	508	0	ENST00000257430.4:c.4265del	p.Asp1422ValfsTer51	p.D1422Vfs*51	ENST00000257430	NM_000038.5	1422	gAt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0052431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	175	670	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0052431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	135	466	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0052431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	55	432	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
MPL	4352	MSKCC	GRCh37	1	43818383	43818383	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0052431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	192	636	0	ENST00000372470.3:c.1848C>A	p.Cys616Ter	p.C616*	ENST00000372470	NM_005373.2	616	tgC/tgA																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472471	88472471	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	241	616	0	ENST00000360948.2:c.2084T>C	p.Ile695Thr	p.I695T	ENST00000360948	NM_001012338.2	695	aTt/aCt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	151	518	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	137	418	0	ENST00000257430.4:c.4285del	p.Gln1429LysfsTer44	p.Q1429Kfs*44	ENST00000257430	NM_000038.5	1429	Caa/aa																																																																															
CD79B	974	MSKCC	GRCh37	17	62006641	62006641	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149266494		P-0052431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	153	662	1	ENST00000392795.3:c.638C>T	p.Thr213Met	p.T213M	ENST00000392795	NM_001039933.1	213	aCg/aTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857196	9857196	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs74935155		P-0052431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	31	555	0	ENST00000330684.3:c.4205G>A	p.Arg1402Gln	p.R1402Q	ENST00000330684	NM_001134407.1	1402	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112174973	112174973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	48	276	0	ENST00000257430.4:c.3682C>T	p.Gln1228Ter	p.Q1228*	ENST00000257430	NM_000038.5	1228	Cag/Tag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934900	9934900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	85	484	0	ENST00000330684.3:c.1390C>A	p.Leu464Met	p.L464M	ENST00000330684	NM_001134407.1	464	Ctg/Atg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36941260	36941260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	218	706	1	ENST00000361632.4:c.79G>A	p.Gly27Arg	p.G27R	ENST00000361632		27	Ggg/Agg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279600	123279600	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	242	717	0	ENST00000358487.5:c.832T>C	p.Cys278Arg	p.C278R	ENST00000358487	NM_000141.4	278	Tgc/Cgc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59886090	59886090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	26	508	0	ENST00000259008.2:c.656G>A	p.Cys219Tyr	p.C219Y	ENST00000259008	NM_032043.2	219	tGt/tAt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395709	45395709	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	57	476	0	ENST00000262160.6:c.425A>G	p.Glu142Gly	p.E142G	ENST00000262160	NM_005901.5	142	gAa/gGa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56367743	56367743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	59	457	1	ENST00000348428.3:c.569G>A	p.Cys190Tyr	p.C190Y	ENST00000348428	NM_006785.3	190	tGt/tAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295779	212295779	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	140	515	0	ENST00000342788.4:c.2534C>A	p.Ala845Glu	p.A845E	ENST00000342788	NM_005235.2	845	gCa/gAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40738986	40738986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	151	517	0	ENST00000373198.4:c.3298G>A	p.Val1100Met	p.V1100M	ENST00000373198	NM_133170.3	1100	Gtg/Atg																																																																															
TP63	8626	MSKCC	GRCh37	3	189612022	189612022	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	287	555	0	ENST00000264731.3:c.1774C>A	p.Gln592Lys	p.Q592K	ENST00000264731	NM_003722.4	592	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0052469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	227	616	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175000	112175000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	53	297	0	ENST00000257430.4:c.3709C>T	p.Gln1237Ter	p.Q1237*	ENST00000257430	NM_000038.5	1237	Cag/Tag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0052469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	255	758	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021623	31021623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	96	570	0	ENST00000375687.4:c.1622G>A	p.Arg541Gln	p.R541Q	ENST00000375687	NM_015338.5	541	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0052469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	368	554	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175487	112175487	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	76	436	0	ENST00000257430.4:c.4196del	p.Arg1399LeufsTer16	p.R1399Lfs*16	ENST00000257430	NM_000038.5	1399	cGt/ct																																																																															
SESN1	27244	MSKCC	GRCh37	6	109315795	109315798	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-	rs779935597		P-0052469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	92	612	0	ENST00000436639.2:c.987_990del	p.Phe329LeufsTer10	p.F329Lfs*10	ENST00000436639	NM_014454.2	329	ttCTTT/tt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982389	201982390	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0052469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	141	744	0	ENST00000359651.3:c.769dup	p.Tyr257LeufsTer44	p.Y257Lfs*44	ENST00000359651		256	-/T																																																																															
BLM	641	MSKCC	GRCh37	15	91333955	91333955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	80	636	0	ENST00000355112.3:c.2900C>T	p.Pro967Leu	p.P967L	ENST00000355112	NM_000057.2	967	cCt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0052524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	57	319	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29576111	29576111	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854560		P-0052524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	128	377	0	ENST00000358273.4:c.4084C>T	p.Arg1362Ter	p.R1362*	ENST00000358273	NM_001042492.2	1362	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29528086	29528086	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0052524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	23	202	0	ENST00000358273.4:c.1094C>G	p.Ser365Ter	p.S365*	ENST00000358273	NM_001042492.2	365	tCa/tGa																																																																															
LMO1	4004	MSKCC	GRCh37	11	8248566	8248568	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0052524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	101	760	0	ENST00000335790.3:c.319_321del	p.Asn107del	p.N107del	ENST00000335790	NM_002315.2	107	AAC/-																																																																															
APC	324	MSKCC	GRCh37	5	112175531	112175532	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0052524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	37	294	0	ENST00000257430.4:c.4240_4241del	p.Val1414LysfsTer8	p.V1414Kfs*8	ENST00000257430	NM_000038.5	1414	GTa/a																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878413	151878413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	109	559	0	ENST00000262189.6:c.6532C>T	p.Pro2178Ser	p.P2178S	ENST00000262189	NM_170606.2	2178	Ccc/Tcc																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	464	844	1	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	179	343	2	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	64	164	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	177	495	2	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	87	293	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	405	760	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	91	352	4	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	252	694	3	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303028	15303028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	60	931	0	ENST00000263388.2:c.422G>A	p.Arg141His	p.R141H	ENST00000263388	NM_000435.2	141	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	249	679	0	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																																																															
ATM	472	MSKCC	GRCh37	11	108216546	108216546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	124	213	0	ENST00000278616.4:c.8495G>A	p.Arg2832His	p.R2832H	ENST00000278616	NM_000051.3	2832	cGt/cAt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226949	2226949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	224	576	1	ENST00000398665.3:c.4429G>A	p.Gly1477Ser	p.G1477S	ENST00000398665	NM_032482.2	1477	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	162	358	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
WT1	7490	MSKCC	GRCh37	11	32417944	32417944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	158	499	1	ENST00000332351.3:c.1108C>T	p.Arg370Cys	p.R370C	ENST00000332351	NM_024426.4	370	Cgt/Tgt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	125	370	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	144	618	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332915	153332915	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200698994		P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	100	286	0	ENST00000281708.4:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000281708	NM_033632.3	14	cGa/cAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181765	56181765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	108	222	0	ENST00000399503.3:c.3989C>T	p.Ser1330Leu	p.S1330L	ENST00000399503	NM_005921.1	1330	tCg/tTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707683	176707683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	185	456	1	ENST00000439151.2:c.5740C>T	p.Arg1914Cys	p.R1914C	ENST00000439151	NM_022455.4	1914	Cgc/Tgc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	142	383	1	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715678	30715678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	117	284	0	ENST00000359013.4:c.1411G>A	p.Asp471Asn	p.D471N	ENST00000359013	NM_001024847.2	471	Gat/Aat																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372092	55372093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	170	546	0	ENST00000297316.4:c.788dup	p.Glu264GlyfsTer101	p.E264Gfs*101	ENST00000297316	NM_022454.3	261	ggc/ggCc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444276	50444276	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144637662		P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	84	242	0	ENST00000331340.3:c.206G>A	p.Arg69His	p.R69H	ENST00000331340	NM_006060.4	69	cGt/cAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892293	9892293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	99	389	0	ENST00000330684.3:c.2197G>A	p.Ala733Thr	p.A733T	ENST00000330684	NM_001134407.1	733	Gca/Aca																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288969	212288969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148791072		P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	198	402	0	ENST00000342788.4:c.2777C>T	p.Thr926Met	p.T926M	ENST00000342788	NM_005235.2	926	aCg/aTg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469037	25469037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	299	668	2	ENST00000264709.3:c.1421G>A	p.Arg474His	p.R474H	ENST00000264709	NM_175629.2	474	cGc/cAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340357	8340357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	191	468	3	ENST00000356435.5:c.5239C>T	p.Arg1747Cys	p.R1747C	ENST00000356435		1747	Cgt/Tgt																																																																															
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	161	387	1	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																															
TSC1	7248	MSKCC	GRCh37	9	135785984	135785984	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	217	667	0	ENST00000298552.3:c.1237del	p.Gln413ArgfsTer27	p.Q413Rfs*27	ENST00000298552	NM_001162426.1	413	Cag/ag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030278	180030278	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201796032		P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	312	829	1	ENST00000261937.6:c.4006G>A	p.Glu1336Lys	p.E1336K	ENST00000261937	NM_182925.4	1336	Gag/Aag																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111145	193111146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG	rs1374189523		P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	59	263	0	ENST00000367435.3:c.687_688dup	p.Val230GlufsTer28	p.V230Efs*28	ENST00000367435	NM_024529.4	226	-/AG																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356412	66356412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	109	344	0	ENST00000273854.3:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000273854	NM_004439.5	362	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112174213	112174214	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	101	261	0	ENST00000257430.4:c.2926dup	p.Arg976LysfsTer9	p.R976Kfs*9	ENST00000257430	NM_000038.5	974	-/A																																																																															
EP300	2033	MSKCC	GRCh37	22	41523641	41523641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	240	685	0	ENST00000263253.7:c.1057C>T	p.Arg353Cys	p.R353C	ENST00000263253	NM_001429.3	353	Cgc/Tgc																																																																															
AXL	558	MSKCC	GRCh37	19	41737106	41737106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	107	776	1	ENST00000301178.4:c.686G>A	p.Arg229His	p.R229H	ENST00000301178	NM_021913.4	229	cGt/cAt																																																																															
RET	5979	MSKCC	GRCh37	10	43615023	43615023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	212	780	2	ENST00000355710.3:c.2437C>T	p.Arg813Trp	p.R813W	ENST00000355710	NM_020975.4	813	Cgg/Tgg																																																																															
GNA11	2767	MSKCC	GRCh37	19	3115043	3115043	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	276	808	0	ENST00000078429.4:c.578C>A	p.Pro193His	p.P193H	ENST00000078429	NM_002067.2	193	cCt/cAt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680731	30680731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	138	488	0	ENST00000376406.3:c.988G>A	p.Asp330Asn	p.D330N	ENST00000376406	NM_014641.2	330	Gac/Aac																																																																															
TSC2	7249	MSKCC	GRCh37	16	2120571	2120571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	266	863	1	ENST00000219476.3:c.1831C>T	p.Arg611Trp	p.R611W	ENST00000219476	NM_000548.3	611	Cgg/Tgg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953369	17953369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	257	862	0	ENST00000458235.1:c.617G>A	p.Ser206Asn	p.S206N	ENST00000458235	NM_000215.3	206	aGc/aAc																																																																															
PIM1	5292	MSKCC	GRCh37	6	37138563	37138563	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs34095970		P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	186	581	0	ENST00000373509.5:c.100del	p.Leu34TrpfsTer60	p.L34Wfs*60	ENST00000373509	NM_002648.3	33	Ccc/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223613	36223614	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765758919		P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	257	896	1	ENST00000222270.7:c.6169dup	p.Arg2057ProfsTer3	p.R2057Pfs*3	ENST00000222270	NM_014727.1	2055	gcc/gCcc																																																																															
BBC3	27113	MSKCC	GRCh37	19	47725046	47725046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	275	961	1	ENST00000449228.1:c.698G>A	p.Arg233His	p.R233H	ENST00000449228	NM_001127240.2	233	cGc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254677	16254677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	169	407	0	ENST00000375759.3:c.1942C>T	p.Arg648Trp	p.R648W	ENST00000375759	NM_015001.2	648	Cgg/Tgg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47142993	47142993	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	72	389	0	ENST00000409792.3:c.4970C>A	p.Pro1657His	p.P1657H	ENST00000409792	NM_014159.6	1657	cCt/cAt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753096	57753096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	132	345	0	ENST00000274289.3:c.920C>T	p.Ala307Val	p.A307V	ENST00000274289	NM_006622.3	307	gCc/gTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101051	27101051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	225	696	2	ENST00000324856.7:c.4333C>T	p.Arg1445Cys	p.R1445C	ENST00000324856	NM_006015.4	1445	Cgc/Tgc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344476	118344476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	95	230	1	ENST00000534358.1:c.2602G>A	p.Val868Met	p.V868M	ENST00000534358	NM_005933.3	868	Gtg/Atg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261752	16261752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	198	494	2	ENST00000375759.3:c.9017G>A	p.Ser3006Asn	p.S3006N	ENST00000375759	NM_015001.2	3006	aGc/aAc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65310493	65310493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	193	643	0	ENST00000342505.4:c.2195G>A	p.Gly732Asp	p.G732D	ENST00000342505	NM_002227.2	732	gGc/gAc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241906	72241906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	113	324	0	ENST00000357731.5:c.484G>A	p.Ala162Thr	p.A162T	ENST00000357731	NM_173808.2	162	Gcc/Acc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874223	155874223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	124	492	0	ENST00000368323.3:c.308C>T	p.Thr103Met	p.T103M	ENST00000368323	NM_006912.5	103	aCg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49439868	49439868	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	109	666	1	ENST00000301067.7:c.4673C>A	p.Pro1558His	p.P1558H	ENST00000301067	NM_003482.3	1558	cCc/cAc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134033	41134033	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	188	531	0	ENST00000379561.5:c.1595C>A	p.Ser532Tyr	p.S532Y	ENST00000379561	NM_002015.3	532	tCt/tAt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30132967	30132967	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	187	507	0	ENST00000331968.5:c.634del	p.Val212SerfsTer52	p.V212Sfs*52	ENST00000331968	NM_002742.2	212	Gtc/tc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609700	81609700	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	78	522	0	ENST00000298171.2:c.1298T>C	p.Val433Ala	p.V433A	ENST00000298171	NM_000369.2	433	gTc/gCc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610570	81610570	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	126	272	0	ENST00000298171.2:c.2168A>G	p.Lys723Arg	p.K723R	ENST00000298171	NM_000369.2	723	aAg/aGg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99442775	99442775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	165	548	1	ENST00000268035.6:c.1172G>A	p.Arg391His	p.R391H	ENST00000268035	NM_000875.3	391	cGc/cAc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658895	3658895	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	189	454	0	ENST00000294008.3:c.71C>A	p.Pro24His	p.P24H	ENST00000294008	NM_032444.2	24	cCt/cAt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89851261	89851261	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	144	468	0	ENST00000389301.3:c.1470+1G>A		p.X490_splice	ENST00000389301	NM_000135.2	490																																																																																
PPM1D	8493	MSKCC	GRCh37	17	58711239	58711239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	189	343	0	ENST00000305921.3:c.727C>T	p.Arg243Cys	p.R243C	ENST00000305921	NM_003620.3	243	Cgt/Tgt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39623744	39623744	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	151	267	0	ENST00000262039.4:c.2151T>G	p.Ile717Met	p.I717M	ENST00000262039	NM_002647.2	717	atT/atG																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245914	5245914	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764335621		P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	120	890	0	ENST00000357368.4:c.861del	p.Glu288ArgfsTer41	p.E288Rfs*41	ENST00000357368	NM_002850.3	287	ccC/cc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39285864	39285864	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	148	308	1	ENST00000402219.2:c.295C>T	p.Arg99Ter	p.R99*	ENST00000402219	NM_005633.3	99	Cga/Tga																																																																															
MSH2	4436	MSKCC	GRCh37	2	47643552	47643552	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	152	322	0	ENST00000233146.2:c.1061del	p.Asn354ThrfsTer3	p.N354Tfs*3	ENST00000233146	NM_000251.2	354	Aac/ac																																																																															
MSH2	4436	MSKCC	GRCh37	2	47693933	47693934	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	144	262	0	ENST00000233146.2:c.1650dup	p.Phe551IlefsTer11	p.F551Ifs*11	ENST00000233146	NM_000251.2	549	-/A																																																																															
CUL3	8452	MSKCC	GRCh37	2	225338987	225338987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	231	273	1	ENST00000264414.4:c.2282G>A	p.Arg761His	p.R761H	ENST00000264414	NM_003590.4	761	cGc/cAc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225343039	225343039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	216	366	0	ENST00000264414.4:c.2053G>A	p.Asp685Asn	p.D685N	ENST00000264414	NM_003590.4	685	Gac/Aac																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803247	1803247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	237	810	0	ENST00000260795.2:c.599G>A	p.Arg200His	p.R200H	ENST00000260795		200	cGc/cAc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807295	1807295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	219	758	0	ENST00000260795.2:c.1544C>A	p.Thr515Asn	p.T515N	ENST00000260795		515	aCt/aAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247307	153247307	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	77	295	0	ENST00000281708.4:c.1495G>T	p.Gly499Cys	p.G499C	ENST00000281708	NM_033632.3	499	Ggt/Tgt																																																																															
FYN	2534	MSKCC	GRCh37	6	112024189	112024189	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	120	296	0	ENST00000368678.4:c.596A>G	p.His199Arg	p.H199R	ENST00000368678		199	cAt/cGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151848085	151848085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	100	263	0	ENST00000262189.6:c.12674G>A	p.Arg4225Gln	p.R4225Q	ENST00000262189	NM_170606.2	4225	cGa/cAa																																																																															
FANCC	2176	MSKCC	GRCh37	9	97873777	97873777	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	208	698	1	ENST00000289081.3:c.1297del	p.Arg433ValfsTer14	p.R433Vfs*14	ENST00000289081	NM_000136.2	433	Cgt/gt																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0052532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	125	241	2	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001366	29001366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	181	324	0	ENST00000282397.4:c.1366G>A	p.Ala456Thr	p.A456T	ENST00000282397	NM_002019.4	456	Gca/Aca																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367798	15367798	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144627512		P-0052532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	299	705	4	ENST00000263377.2:c.1528C>T	p.Arg510Trp	p.R510W	ENST00000263377	NM_058243.2	510	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0052532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	399	515	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
ARID2	196528	MSKCC	GRCh37	12	46125076	46125076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	158	159	0	ENST00000334344.6:c.263C>A	p.Ala88Asp	p.A88D	ENST00000334344	NM_152641.2	88	gCt/gAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853346	151853347	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0052532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	181	380	0	ENST00000262189.6:c.11755_11756del	p.Gly3919PhefsTer5	p.G3919Ffs*5	ENST00000262189	NM_170606.2	3919	GGt/t																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371684	55371684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	81	795	1	ENST00000297316.4:c.374G>A	p.Arg125His	p.R125H	ENST00000297316	NM_022454.3	125	cGc/cAc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57466809	57466809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	26	282	0	ENST00000371085.3:c.28G>A	p.Glu10Lys	p.E10K	ENST00000371085	NM_000516.4	10	Gag/Aag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852659	63852659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	55	718	1	ENST00000279873.7:c.3437C>T	p.Ala1146Val	p.A1146V	ENST00000279873	NM_032199.2	1146	gCg/gTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65349101	65349101	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0052623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	55	676	0	ENST00000342505.4:c.64T>A	p.Ser22Thr	p.S22T	ENST00000342505	NM_002227.2	22	Tcc/Acc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112915755	112915755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	67	478	0	ENST00000351677.2:c.1028G>A	p.Arg343Gln	p.R343Q	ENST00000351677	NM_002834.3	343	cGg/cAg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88669502	88669502	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0052623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	46	443	0	ENST00000360948.2:c.1396G>T	p.Gly466Cys	p.G466C	ENST00000360948	NM_001012338.2	466	Ggt/Tgt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323141	31323141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	53	1235	0	ENST00000412585.2:c.848G>A	p.Cys283Tyr	p.C283Y	ENST00000412585	NM_005514.6	283	tGc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0052734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	144	526	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012465	29012465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	44	377	0	ENST00000282397.4:c.406G>A	p.Val136Ile	p.V136I	ENST00000282397	NM_002019.4	136	Gta/Ata																																																																															
APC	324	MSKCC	GRCh37	5	112175225	112175225	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	27	211	0	ENST00000257430.4:c.3935del	p.Gly1312GlufsTer9	p.G1312Efs*9	ENST00000257430	NM_000038.5	1312	Gga/ga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968251	134968251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	92	492	2	ENST00000398015.3:c.2764G>A	p.Ala922Thr	p.A922T	ENST00000398015	NM_004441.4	922	Gcc/Acc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342776	118342776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	25	284	0	ENST00000534358.1:c.902G>A	p.Arg301Gln	p.R301Q	ENST00000534358	NM_005933.3	301	cGa/cAa																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14317388	14317388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	86	316	2	ENST00000256196.4:c.122C>T	p.Thr41Met	p.T41M	ENST00000256196		41	aCg/aTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346256	89346256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	33	298	0	ENST00000301030.4:c.6694C>T	p.Arg2232Cys	p.R2232C	ENST00000301030	NM_001256183.1	2232	Cgt/Tgt																																																																															
CBL	867	MSKCC	GRCh37	11	119155682	119155682	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0052734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	46	323	0	ENST00000264033.4:c.1435G>T	p.Glu479Ter	p.E479*	ENST00000264033	NM_005188.3	479	Gaa/Taa																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112893839	112893839	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	25	312	0	ENST00000351677.2:c.728T>C	p.Val243Ala	p.V243A	ENST00000351677	NM_002834.3	243	gTc/gCc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81927346	81927346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	40	515	0	ENST00000359376.3:c.1019C>T	p.Ser340Leu	p.S340L	ENST00000359376	NM_002661.3	340	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112175038	112175045	+	frameshift_variant	Frame_Shift_Del	DEL	CAAAGTTT	CAAAGTTT	-			P-0052734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	44	217	0	ENST00000257430.4:c.3748_3755del	p.Lys1250PhefsTer3	p.K1250Ffs*3	ENST00000257430	NM_000038.5	1249	tgCAAAGTTTct/tgct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0052825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	76	302	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43739647	43739647	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0052825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	45	202	0	ENST00000382044.4:c.2753A>C	p.Asp918Ala	p.D918A	ENST00000382044	NM_001141980.1	918	gAt/gCt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	72	380	0	ENST00000262160.6:c.962G>C	p.Arg321Pro	p.R321P	ENST00000262160	NM_005901.5	321	cGa/cCa																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152861461	152861461	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0052825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	38	165	0	ENST00000406277.2:c.290+1G>C		p.X97_splice	ENST00000406277	NM_152274.4	97																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5221161	5221161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	157	704	1	ENST00000357368.4:c.3305G>A	p.Arg1102His	p.R1102H	ENST00000357368	NM_002850.3	1102	cGc/cAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347930	347930	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141148118		P-0052843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	224	780	0	ENST00000262320.3:c.1576G>A	p.Ala526Thr	p.A526T	ENST00000262320	NM_003502.3	526	Gcg/Acg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741837	17741837	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199584989		P-0052843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	50	188	1	ENST00000250003.3:c.508G>A	p.Ala170Thr	p.A170T	ENST00000250003	NM_002478.4	170	Gcg/Acg																																																																															
KDR	3791	MSKCC	GRCh37	4	55979552	55979552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	186	593	0	ENST00000263923.4:c.895C>T	p.Arg299Trp	p.R299W	ENST00000263923	NM_002253.2	299	Cgg/Tgg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535412	66535412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	129	283	0	ENST00000273854.3:c.49G>A	p.Gly17Ser	p.G17S	ENST00000273854	NM_004439.5	17	Ggc/Agc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609330	81609330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	66	338	4	ENST00000298171.2:c.928C>T	p.Arg310Cys	p.R310C	ENST00000298171	NM_000369.2	310	Cgc/Tgc																																																																															
WT1	7490	MSKCC	GRCh37	11	32450120	32450120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	79	669	0	ENST00000332351.3:c.692C>T	p.Thr231Met	p.T231M	ENST00000332351	NM_024426.4	231	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577552	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0052843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	275	668	0	ENST00000269305.4:c.729_730delinsTT	p.Met243_Gly244delinsIleCys	p.M243_G244delinsIC	ENST00000269305	NM_001126112.2	243	atGGgc/atTTgc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95574424	95574424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	51	274	0	ENST00000343455.3:c.2443C>A	p.His815Asn	p.H815N	ENST00000343455	NM_177438.2	815	Cac/Aac																																																																															
MSI2	124540	MSKCC	GRCh37	17	55693389	55693389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	72	726	1	ENST00000284073.2:c.596G>A	p.Arg199Gln	p.R199Q	ENST00000284073	NM_138962.2	199	cGg/cAg																																																																															
KDR	3791	MSKCC	GRCh37	4	55946245	55946245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	58	382	0	ENST00000263923.4:c.3934G>A	p.Asp1312Asn	p.D1312N	ENST00000263923	NM_002253.2	1312	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112162899	112162900	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0052843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	139	445	0	ENST00000257430.4:c.1504_1505dup	p.Met503GlufsTer4	p.M503Efs*4	ENST00000257430	NM_000038.5	501	-/GG																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056547	26056547	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	154	271	0	ENST00000343677.2:c.110G>T	p.Gly37Val	p.G37V	ENST00000343677	NM_005319.3	37	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0052848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	258	462	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0052848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	45	400	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0052848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	350	765	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	65	565	1	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108178641	108178641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	33	259	0	ENST00000278616.4:c.5692C>T	p.Arg1898Ter	p.R1898*	ENST00000278616	NM_000051.3	1898	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827886	40827886	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201911869		P-0052848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1096	69	543	0	ENST00000373198.4:c.2542G>A	p.Gly848Arg	p.G848R	ENST00000373198	NM_133170.3	848	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112175784	112175799	+	frameshift_variant	Frame_Shift_Del	DEL	ATGGATTTTCTTGTTC	ATGGATTTTCTTGTTC	-			P-0052848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	277	331	0	ENST00000257430.4:c.4495_4510del	p.Gly1499ProfsTer3	p.G1499Pfs*3	ENST00000257430	NM_000038.5	1498	gATGGATTTTCTTGTTCa/ga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114917781	114917781	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0052848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	56	358	0	ENST00000543371.1:c.1271G>A	p.Gly424Glu	p.G424E	ENST00000543371	NM_001198531.1	424	gGa/gAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0052851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	165	496	2	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0052851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	246	739	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0052851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	24	168	0	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112175561	112175561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	81	364	0	ENST00000257430.4:c.4271del	p.Pro1424GlnfsTer49	p.P1424Qfs*49	ENST00000257430	NM_000038.5	1424	Cca/ca																																																																															
APC	324	MSKCC	GRCh37	5	112173817	112173820	+	frameshift_variant	Frame_Shift_Del	DEL	TAGT	TAGT	-			P-0052851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	63	371	0	ENST00000257430.4:c.2527_2530del	p.Ser843LeufsTer17	p.S843Lfs*17	ENST00000257430	NM_000038.5	842	gaTAGT/ga																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046466	30046467	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0052851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	50	633	1	ENST00000331968.5:c.2716_2717delinsTT	p.Gly906Phe	p.G906F	ENST00000331968	NM_002742.2	906	GGt/TTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250874	153250875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	142	331	0	ENST00000281708.4:c.1185dup	p.Ser396Ter	p.S396*	ENST00000281708	NM_033632.3	395	-/T																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427579	72427579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	44	269	1	ENST00000477973.2:c.909C>T	p.Thr304Met	p.T304M	ENST00000477973	NM_012234.5	304	aCg/aTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	44	269	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	77	783	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88659550	88659550	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	92	388	0	ENST00000372037.3:c.334-1G>T		p.X112_splice	ENST00000372037	NM_004329.2	112																																																																																
E2F3	1871	MSKCC	GRCh37	6	20402537	20402537	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	48	386	0	ENST00000346618.3:c.74T>C	p.Val25Ala	p.V25A	ENST00000346618	NM_001949.4	25	gTc/gCc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	49	759	2	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	67	360	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	113	651	10	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762108866		P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	46	360	1	ENST00000268489.5:c.10215dup	p.Gly3406ArgfsTer25	p.G3406Rfs*25	ENST00000268489	NM_006885.3	3405	-/C																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	138	382	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647028	23647028	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	104	502	0	ENST00000261584.4:c.839del	p.Asn280ThrfsTer8	p.N280Tfs*8	ENST00000261584	NM_024675.3	280	aAc/ac																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885939	111885939	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	61	559	1	ENST00000341259.2:c.1566del	p.Glu523SerfsTer25	p.E523Sfs*25	ENST00000341259	NM_005475.2	521	Ccc/cc																																																																															
EP300	2033	MSKCC	GRCh37	22	41574502	41574502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	83	653	0	ENST00000263253.7:c.6787C>T	p.Arg2263Ter	p.R2263*	ENST00000263253	NM_001429.3	2263	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112170768	112170769	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	107	500	0	ENST00000257430.4:c.1865dup	p.Tyr622Ter	p.Y622*	ENST00000257430	NM_000038.5	622	tac/tAac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290271	15290271	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140147764		P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	96	658	0	ENST00000263388.2:c.3364G>A	p.Asp1122Asn	p.D1122N	ENST00000263388	NM_000435.2	1122	Gac/Aac																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	75	800	2	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94924618	94924618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	104	450	1	ENST00000536441.1:c.292C>T	p.Arg98Cys	p.R98C	ENST00000536441	NM_144665.3	98	Cgc/Tgc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066695	94066695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	78	412	1	ENST00000369303.4:c.1064C>T	p.Ala355Val	p.A355V	ENST00000369303	NM_004440.3	355	gCa/gTa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797749	32797749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	44	553	0	ENST00000374899.4:c.1753G>A	p.Ala585Thr	p.A585T	ENST00000374899	NM_018833.2	585	Gca/Aca																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872936	136872936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	63	323	0	ENST00000241393.3:c.562C>T	p.Arg188Cys	p.R188C	ENST00000241393	NM_003467.2	188	Cgc/Tgc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805787	32805788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1174402903		P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	104	773	1	ENST00000374899.4:c.223dup	p.Leu75ProfsTer92	p.L75Pfs*92	ENST00000374899	NM_018833.2	75	ctg/cCtg																																																																															
CIC	23152	MSKCC	GRCh37	19	42797191	42797191	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587778202		P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	116	948	1	ENST00000575354.2:c.3553G>A	p.Ala1185Thr	p.A1185T	ENST00000575354	NM_015125.3	1185	Gcc/Acc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342917	118342917	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	44	241	0	ENST00000534358.1:c.1043T>C	p.Val348Ala	p.V348A	ENST00000534358	NM_005933.3	348	gTc/gCc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3656567	3656567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	110	713	0	ENST00000294008.3:c.668G>A	p.Arg223His	p.R223H	ENST00000294008	NM_032444.2	223	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112111328	112111328	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	35	143	0	ENST00000257430.4:c.425C>A	p.Ser142Ter	p.S142*	ENST00000257430	NM_000038.5	142	tCa/tAa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274124	10274124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	83	619	0	ENST00000330684.3:c.145C>T	p.Arg49Cys	p.R49C	ENST00000330684	NM_001134407.1	49	Cgc/Tgc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7980340	7980340	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	71	573	0	ENST00000319144.4:c.1243A>G	p.Arg415Gly	p.R415G	ENST00000319144	NM_001139.2	415	Agg/Ggg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223425	36223425	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	112	975	2	ENST00000222270.7:c.5975A>T	p.Asp1992Val	p.D1992V	ENST00000222270	NM_014727.1	1992	gAc/gTc																																																																															
CIC	23152	MSKCC	GRCh37	19	42797776	42797776	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	93	715	0	ENST00000575354.2:c.3828G>A	p.Trp1276Ter	p.W1276*	ENST00000575354	NM_015125.3	1276	tgG/tgA																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99160431	99160431	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	99	438	0	ENST00000074304.5:c.910A>G	p.Thr304Ala	p.T304A	ENST00000074304	NM_001134224.1	304	Aca/Gca																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940022	49940022	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	110	737	0	ENST00000296474.3:c.1021G>T	p.Glu341Ter	p.E341*	ENST00000296474	NM_002447.2	341	Gag/Tag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31495403	31495403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	71	384	0	ENST00000344624.3:c.1745C>T	p.Thr582Met	p.T582M	ENST00000344624		582	aCg/aTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69058537	69058537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	99	486	0	ENST00000288368.4:c.4181G>A	p.Arg1394Gln	p.R1394Q	ENST00000288368	NM_024870.2	1394	cGg/cAg																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	59	364	1	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	92	404	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	35	347	0	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	62	351	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	119	756	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	77	378	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	100	483	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	73	430	0	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	153	437	0	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720661	89720661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	92	352	0	ENST00000371953.3:c.812T>C	p.Phe271Ser	p.F271S	ENST00000371953	NM_000314.4	271	tTt/tCt																																																																															
EZH2	2146	MSKCC	GRCh37	7	148543650	148543650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	81	339	0	ENST00000320356.2:c.158C>T	p.Thr53Met	p.T53M	ENST00000320356	NM_004456.4	53	aCg/aTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53250089	53250089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	88	264	0	ENST00000375401.3:c.160C>T	p.Pro54Ser	p.P54S	ENST00000375401	NM_004187.3	54	Cca/Tca																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3828772	3828772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	50	566	0	ENST00000262367.5:c.1870C>T	p.Arg624Cys	p.R624C	ENST00000262367	NM_004380.2	624	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222982	5222982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201435229		P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	95	596	1	ENST00000357368.4:c.2821G>A	p.Ala941Thr	p.A941T	ENST00000357368	NM_002850.3	941	Gcc/Acc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720711	89720712	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	45	189	0	ENST00000371953.3:c.867dup	p.Val290SerfsTer8	p.V290Sfs*8	ENST00000371953	NM_000314.4	288	gaa/gAaa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244875	46244875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	107	501	0	ENST00000334344.6:c.2969C>T	p.Ser990Leu	p.S990L	ENST00000334344	NM_152641.2	990	tCg/tTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254872	16254872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	99	468	0	ENST00000375759.3:c.2137C>T	p.Arg713Trp	p.R713W	ENST00000375759	NM_015001.2	713	Cgg/Tgg																																																																															
POLE	5426	MSKCC	GRCh37	12	133202283	133202283	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764457707		P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	167	826	0	ENST00000320574.5:c.6605C>T	p.Thr2202Met	p.T2202M	ENST00000320574	NM_006231.2	2202	aCg/aTg																																																																															
B2M	567	MSKCC	GRCh37	15	45003767	45003767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	68	614	2	ENST00000558401.1:c.23C>A	p.Ala8Asp	p.A8D	ENST00000558401	NM_004048.2	8	gCt/gAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133235926	133235926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	129	726	1	ENST00000320574.5:c.3230G>A	p.Arg1077His	p.R1077H	ENST00000320574	NM_006231.2	1077	cGc/cAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589618	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519838		P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	38	214	0	ENST00000274335.5:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000274335		461	Cga/Tga																																																																															
HRAS	3265	MSKCC	GRCh37	11	534270	534270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	51	741	3	ENST00000311189.7:c.53C>T	p.Ala18Val	p.A18V	ENST00000311189		18	gCg/gTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877349	40877349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	83	499	0	ENST00000373198.4:c.2347G>A	p.Val783Met	p.V783M	ENST00000373198	NM_133170.3	783	Gtg/Atg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953156	81953156	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1381167403		P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	63	334	0	ENST00000359376.3:c.2122G>A	p.Ala708Thr	p.A708T	ENST00000359376	NM_002661.3	708	Gcc/Acc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190746	11190746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	132	805	0	ENST00000361445.4:c.5453G>A	p.Arg1818His	p.R1818H	ENST00000361445	NM_004958.3	1818	cGt/cAt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40476777	40476777	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	69	614	2	ENST00000264657.5:c.1552C>T	p.Arg518Ter	p.R518*	ENST00000264657	NM_139276.2	518	Cga/Tga																																																																															
DICER1	23405	MSKCC	GRCh37	14	95563044	95563044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	62	256	0	ENST00000343455.3:c.4213G>T	p.Asp1405Tyr	p.D1405Y	ENST00000343455	NM_177438.2	1405	Gac/Tac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859766	151859767	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	81	428	0	ENST00000262189.6:c.10895dup	p.Pro3633ThrfsTer19	p.P3633Tfs*19	ENST00000262189	NM_170606.2	3632	cca/ccCa																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793208	139793208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	155	682	0	ENST00000247668.2:c.16G>A	p.Val6Met	p.V6M	ENST00000247668	NM_021138.3	6	Gtg/Atg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37676267	37676267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	141	539	1	ENST00000447079.4:c.3022C>T	p.Arg1008Trp	p.R1008W	ENST00000447079	NM_015083.1	1008	Cgg/Tgg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753452	42753452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	192	963	0	ENST00000222329.4:c.812C>T	p.Thr271Met	p.T271M	ENST00000222329	NM_006494.2	271	aCg/aTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905891	50905891	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755550936		P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	191	1059	2	ENST00000440232.2:c.863C>T	p.Ala288Val	p.A288V	ENST00000440232	NM_002691.3	288	gCg/gTg																																																																															
WT1	7490	MSKCC	GRCh37	11	32456504	32456504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	24	156	0	ENST00000332351.3:c.388C>A	p.Pro130Thr	p.P130T	ENST00000332351	NM_024426.4	130	Cca/Aca																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323214	31323214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	105	691	0	ENST00000412585.2:c.775C>T	p.Pro259Ser	p.P259S	ENST00000412585	NM_005514.6	259	Cca/Tca																																																																															
MSI1	4440	MSKCC	GRCh37	12	120805842	120805842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	101	921	3	ENST00000257552.2:c.236C>T	p.Ala79Val	p.A79V	ENST00000257552	NM_002442.3	79	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49422892	49422892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	158	779	1	ENST00000301067.7:c.14203C>T	p.Arg4735Trp	p.R4735W	ENST00000301067	NM_003482.3	4735	Cgg/Tgg																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428251	33428251	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150134822		P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	63	619	0	ENST00000335858.7:c.536G>A	p.Arg179His	p.R179H	ENST00000335858	NM_133629.2	179	cGc/cAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396760	139396760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	157	850	0	ENST00000277541.6:c.5348G>A	p.Arg1783Gln	p.R1783Q	ENST00000277541	NM_017617.3	1783	cGg/cAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045569	47045569	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	147	364	0	ENST00000329236.7:c.2302G>A	p.Val768Ile	p.V768I	ENST00000329236	NM_001204466.1	768	Gta/Ata																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748014	72748014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	67	688	0	ENST00000357731.5:c.164C>T	p.Thr55Met	p.T55M	ENST00000357731	NM_173808.2	55	aCg/aTg																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765164	+	missense_variant	Missense_Mutation	ONP	AGCA	AGCA	TGCT	rs200185441		P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	41	177	1	ENST00000374690.3:c.173_176inv	p.Gln58_Gln59delinsLeuLeu	p.Q58_Q59delinsLL	ENST00000374690	NM_000044.3	58	cAGCAg/cTGCTg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742826	17742826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	64	874	0	ENST00000250003.3:c.734C>T	p.Ala245Val	p.A245V	ENST00000250003	NM_002478.4	245	gCg/gTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255013	16255013	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	76	409	0	ENST00000375759.3:c.2278T>G	p.Ser760Ala	p.S760A	ENST00000375759	NM_015001.2	760	Tca/Gca																																																																															
TET1	80312	MSKCC	GRCh37	10	70412337	70412337	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	38	272	0	ENST00000373644.4:c.4447C>A	p.Pro1483Thr	p.P1483T	ENST00000373644	NM_030625.2	1483	Cca/Aca																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481880	56481880	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	133	687	0	ENST00000267101.3:c.808T>C	p.Phe270Leu	p.F270L	ENST00000267101	NM_001982.3	270	Ttc/Ctc																																																																															
SETD8	387893	MSKCC	GRCh37	12	123892068	123892068	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	79	348	1	ENST00000330479.4:c.877C>A	p.Leu293Ile	p.L293I	ENST00000330479	NM_020382.3	293	Cta/Ata																																																																															
POLE	5426	MSKCC	GRCh37	12	133249215	133249215	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	127	526	0	ENST00000320574.5:c.1684A>G	p.Met562Val	p.M562V	ENST00000320574	NM_006231.2	562	Atg/Gtg																																																																															
POLE	5426	MSKCC	GRCh37	12	133249750	133249750	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	60	417	0	ENST00000320574.5:c.1473G>T	p.Glu491Asp	p.E491D	ENST00000320574	NM_006231.2	491	gaG/gaT																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38641680	38641680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	87	409	0	ENST00000299084.4:c.640C>T	p.Arg214Trp	p.R214W	ENST00000299084	NM_152594.2	214	Cgg/Tgg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640823	3640823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	161	854	3	ENST00000294008.3:c.2816G>A	p.Arg939Gln	p.R939Q	ENST00000294008	NM_032444.2	939	cGg/cAg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67655402	67655402	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	114	535	1	ENST00000264010.4:c.1265T>C	p.Met422Thr	p.M422T	ENST00000264010	NM_006565.3	422	aTg/aCg																																																																															
CDH1	999	MSKCC	GRCh37	16	68842382	68842382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	76	539	0	ENST00000261769.5:c.443G>A	p.Gly148Asp	p.G148D	ENST00000261769	NM_004360.3	148	gGc/gAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883790	37883790	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	122	883	0	ENST00000269571.5:c.3406del	p.Gln1136SerfsTer5	p.Q1136Sfs*5	ENST00000269571		1134	agC/ag																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475069	40475069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	151	632	1	ENST00000264657.5:c.1841G>A	p.Ser614Asn	p.S614N	ENST00000264657	NM_139276.2	614	aGc/aAc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250965	10250965	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	142	740	0	ENST00000340748.4:c.3515C>A	p.Pro1172His	p.P1172H	ENST00000340748		1172	cCt/cAt																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967066	18967066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	166	823	0	ENST00000262803.5:c.1781G>T	p.Arg594Leu	p.R594L	ENST00000262803	NM_002911.3	594	cGg/cTg																																																																															
RRAS	6237	MSKCC	GRCh37	19	50139037	50139037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	96	861	1	ENST00000246792.3:c.526C>T	p.Arg176Cys	p.R176C	ENST00000246792	NM_006270.3	176	Cgt/Tgt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909557	50909557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	126	848	4	ENST00000440232.2:c.1361G>A	p.Arg454His	p.R454H	ENST00000440232	NM_002691.3	454	cGc/cAc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027202	48027202	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	81	461	0	ENST00000234420.5:c.2080T>C	p.Cys694Arg	p.C694R	ENST00000234420	NM_000179.2	694	Tgc/Cgc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660915	227660915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	181	817	0	ENST00000305123.5:c.2540C>T	p.Thr847Ile	p.T847I	ENST00000305123	NM_005544.2	847	aCa/aTa																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62293946	62293946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	73	830	0	ENST00000508582.2:c.515C>A	p.Pro172His	p.P172H	ENST00000508582		172	cCt/cAt																																																																															
ATR	545	MSKCC	GRCh37	3	142275306	142275306	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	38	484	0	ENST00000350721.4:c.1997T>C	p.Val666Ala	p.V666A	ENST00000350721	NM_001184.3	666	gTa/gCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541108	187541108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	84	339	0	ENST00000441802.2:c.6632G>A	p.Gly2211Asp	p.G2211D	ENST00000441802	NM_005245.3	2211	gGc/gAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522772	67522772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	31	257	0	ENST00000274335.5:c.269G>A	p.Arg90Gln	p.R90Q	ENST00000274335		90	cGg/cAg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188559	32188559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	124	802	0	ENST00000375023.3:c.896C>T	p.Thr299Ile	p.T299I	ENST00000375023	NM_004557.3	299	aCc/aTc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984050	2984050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	75	579	0	ENST00000396946.4:c.480G>T	p.Glu160Asp	p.E160D	ENST00000396946	NM_032415.4	160	gaG/gaT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389293	8389293	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	84	516	0	ENST00000356435.5:c.4325T>A	p.Met1442Lys	p.M1442K	ENST00000356435		1442	aTg/aAg																																																																															
SYK	6850	MSKCC	GRCh37	9	93606239	93606239	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	76	821	0	ENST00000375746.1:c.59T>A	p.Ile20Asn	p.I20N	ENST00000375746	NM_001174167.1	20	aTc/aAc																																																																															
ABL1	25	MSKCC	GRCh37	9	133738422	133738422	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	46	413	0	ENST00000318560.5:c.822G>T	p.Lys274Asn	p.K274N	ENST00000318560	NM_005157.4	274	aaG/aaT																																																																															
ABL1	25	MSKCC	GRCh37	9	133759589	133759589	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs151335502		P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	96	896	1	ENST00000318560.5:c.1912G>T	p.Gly638Cys	p.G638C	ENST00000318560	NM_005157.4	638	Ggc/Tgc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401769	139401769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	113	893	0	ENST00000277541.6:c.3631C>T	p.Arg1211Trp	p.R1211W	ENST00000277541	NM_017617.3	1211	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0052887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	61	386	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0052887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	56	361	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77047135	77047135	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0052887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	53	385	1	ENST00000356341.3:c.1409T>A	p.Leu470Gln	p.L470Q	ENST00000356341	NM_002576.4	470	cTg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250883	153250883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	27	276	2	ENST00000281708.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000281708	NM_033632.3	393	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0052887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	53	166	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	32	253	1	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	69	456	0	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2137898	2137898	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	187	761	0	ENST00000219476.3:c.5024C>G	p.Pro1675Arg	p.P1675R	ENST00000219476	NM_000548.3	1675	cCg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578206	7578207	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0052887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	97	562	0	ENST00000269305.4:c.642_643del	p.His214GlnfsTer7	p.H214Qfs*7	ENST00000269305	NM_001126112.2	214	caTAgt/cagt																																																																															
TET2	54790	MSKCC	GRCh37	4	106164805	106164805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	66	407	0	ENST00000380013.4:c.3673G>A	p.Val1225Met	p.V1225M	ENST00000380013	NM_001127208.2	1225	Gtg/Atg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	34	473	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	53	805	3	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	28	369	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	53	817	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	32	635	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
CIC	23152	MSKCC	GRCh37	19	42796883	42796883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	60	964	1	ENST00000575354.2:c.3347del	p.Pro1116GlnfsTer45	p.P1116Qfs*45	ENST00000575354	NM_015125.3	1114	gCc/gc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740810	58740810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	37	550	0	ENST00000305921.3:c.1715G>A	p.Arg572Gln	p.R572Q	ENST00000305921	NM_003620.3	572	cGa/cAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845549	72845551	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs763986819		P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	48	720	1	ENST00000268489.5:c.3789_3791del	p.Asn1263del	p.N1263del	ENST00000268489	NM_006885.3	1263	aaCAAg/aag																																																																															
ABL1	25	MSKCC	GRCh37	9	133730254	133730254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	44	559	2	ENST00000318560.5:c.320G>A	p.Gly107Asp	p.G107D	ENST00000318560	NM_005157.4	107	gGc/gAc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933456	49933456	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	44	745	5	ENST00000296474.3:c.2734del	p.Asp912ThrfsTer24	p.D912Tfs*24	ENST00000296474	NM_002447.2	912	Gac/ac																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134248	2134250	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs1385014323		P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	41	823	0	ENST00000219476.3:c.4030_4032del	p.Glu1344del	p.E1344del	ENST00000219476	NM_000548.3	1342	cAGGag/cag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026838	71026838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138415721		P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	36	323	0	ENST00000318789.4:c.1384G>A	p.Ala462Thr	p.A462T	ENST00000318789	NM_032682.5	462	Gca/Aca																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911141	29911141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	43	849	0	ENST00000376809.5:c.440A>G	p.Tyr147Cys	p.Y147C	ENST00000376809	NM_002116.7	147	tAc/tGc																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020769	37020769	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	51	539	0	ENST00000358127.4:c.76G>T	p.Val26Phe	p.V26F	ENST00000358127	NM_001280556.1	26	Gtt/Ttt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	28	396	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	42	762	2	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49418618	49418618	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	36	675	0	ENST00000301067.7:c.15896A>G	p.His5299Arg	p.H5299R	ENST00000301067	NM_003482.3	5299	cAt/cGt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500476	99500476	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	37	814	2	ENST00000268035.6:c.3913del	p.Leu1305TrpfsTer45	p.L1305Wfs*45	ENST00000268035	NM_000875.3	1303	gtC/gt																																																																															
VHL	7428	MSKCC	GRCh37	3	10191621	10191621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	46	548	0	ENST00000256474.2:c.614G>A	p.Arg205His	p.R205H	ENST00000256474	NM_000551.3	205	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435827	56435827	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140873038		P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	53	698	1	ENST00000407977.2:c.1310G>A	p.Arg437Gln	p.R437Q	ENST00000407977		437	cGg/cAg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163309259	163309260	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	31	327	0	ENST00000271452.3:c.604dup	p.Thr202AsnfsTer24	p.T202Nfs*24	ENST00000271452	NM_145697.2	200	caa/cAaa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	56	641	1	ENST00000407977.2:c.349C>A	p.Arg117Ser	p.R117S	ENST00000407977		117	Cgc/Agc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115261263	115261263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	46	572	0	ENST00000438362.2:c.2458C>T	p.Arg820Cys	p.R820C	ENST00000438362	NM_001242891.1	820	Cgt/Tgt																																																																															
MGA	23269	MSKCC	GRCh37	15	42041116	42041116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	46	557	0	ENST00000219905.7:c.5494C>T	p.Arg1832Trp	p.R1832W	ENST00000219905	NM_001164273.1	1832	Cgg/Tgg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112578	115112578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	35	753	0	ENST00000257566.3:c.1162G>A	p.Glu388Lys	p.E388K	ENST00000257566	NM_016569.3	388	Gag/Aag																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194902	29194902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	115	809	3	ENST00000240100.2:c.826G>A	p.Val276Met	p.V276M	ENST00000240100	NM_001394.6	276	Gtg/Atg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26970440	26970441	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	36	231	0	ENST00000381527.3:c.815dup	p.Met273AspfsTer3	p.M273Dfs*3	ENST00000381527	NM_001260.1	270	ata/atAa																																																																															
TEK	7010	MSKCC	GRCh37	9	27204926	27204926	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	28	471	0	ENST00000380036.4:c.2232del	p.Lys745ArgfsTer5	p.K745Rfs*5	ENST00000380036	NM_000459.3	743	Ggg/gg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485311	8485312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	36	423	0	ENST00000356435.5:c.3068dup	p.Asn1023LysfsTer23	p.N1023Kfs*23	ENST00000356435		1023	aat/aaAt																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130433	29130434	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs876661156		P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	41	635	0	ENST00000328354.6:c.276dup	p.Trp93LeufsTer15	p.W93Lfs*15	ENST00000328354	NM_007194.3	92	-/C																																																																															
MTOR	2475	MSKCC	GRCh37	1	11269395	11269395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	38	653	0	ENST00000361445.4:c.3775C>T	p.His1259Tyr	p.H1259Y	ENST00000361445	NM_004958.3	1259	Cac/Tac																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518431	69518431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	16	255	0	ENST00000294312.3:c.214C>T	p.Arg72Trp	p.R72W	ENST00000294312	NM_005117.2	72	Cgg/Tgg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118369170	118369170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	42	482	0	ENST00000534358.1:c.5888G>A	p.Arg1963Gln	p.R1963Q	ENST00000534358	NM_005933.3	1963	cGa/cAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424212	49424212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	13	217	0	ENST00000301067.7:c.13850G>A	p.Ser4617Asn	p.S4617N	ENST00000301067	NM_003482.3	4617	aGt/aAt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864120	57864120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	49	626	0	ENST00000228682.2:c.1597G>A	p.Val533Met	p.V533M	ENST00000228682	NM_005269.2	533	Gtg/Atg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986989	36986989	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	27	494	0	ENST00000354822.5:c.700C>G	p.Gln234Glu	p.Q234E	ENST00000354822	NM_001079668.2	234	Cag/Gag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060763	38060765	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	41	854	0	ENST00000250448.2:c.1224_1226del	p.Ser409del	p.S409del	ENST00000250448	NM_004496.3	408	tcCTCg/tcg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830099	72830099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	41	629	1	ENST00000268489.5:c.6482G>A	p.Arg2161Gln	p.R2161Q	ENST00000268489	NM_006885.3	2161	cGg/cAg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40491333	40491333	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	33	545	0	ENST00000264657.5:c.467A>G	p.Gln156Arg	p.Q156R	ENST00000264657	NM_139276.2	156	cAg/cGg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214023	36214023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	45	841	0	ENST00000222270.7:c.2849G>A	p.Arg950Gln	p.R950Q	ENST00000222270	NM_014727.1	950	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218446	36218446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	32	758	0	ENST00000222270.7:c.4225C>A	p.Leu1409Ile	p.L1409I	ENST00000222270	NM_014727.1	1409	Ctc/Atc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868386	45868386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	62	768	1	ENST00000391945.4:c.391G>A	p.Asp131Asn	p.D131N	ENST00000391945	NM_000400.3	131	Gat/Aat																																																																															
SOS1	6654	MSKCC	GRCh37	2	39249918	39249918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	41	637	0	ENST00000402219.2:c.1651G>A	p.Glu551Lys	p.E551K	ENST00000402219	NM_005633.3	551	Gaa/Aaa																																																																															
PMS1	5378	MSKCC	GRCh37	2	190682901	190682901	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	41	417	0	ENST00000441310.2:c.577A>G	p.Asn193Asp	p.N193D	ENST00000441310	NM_000534.4	193	Aac/Gac																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31495470	31495470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	67	502	2	ENST00000344624.3:c.1678C>T	p.Pro560Ser	p.P560S	ENST00000344624		560	Ccc/Tcc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323095	31323095	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	47	870	0	ENST00000412585.2:c.894G>A	p.Trp298Ter	p.W298*	ENST00000412585	NM_005514.6	298	tgG/tgA																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805858	32805858	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	40	809	0	ENST00000374899.4:c.153del	p.Leu52CysfsTer2	p.L52Cfs*2	ENST00000374899	NM_018833.2	51	ggG/gg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157469817	157469817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	58	740	0	ENST00000346085.5:c.2611G>T	p.Gly871Trp	p.G871W	ENST00000346085	NM_020732.3	871	Ggg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0053063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	181	337	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0053063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	85	318	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0053063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	106	276	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
ERG	2078	MSKCC	GRCh37	21	39755666	39755666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	75	456	1	ENST00000288319.7:c.1099C>T	p.Arg367Cys	p.R367C	ENST00000288319	NM_182918.3	367	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	28	507	0	ENST00000269305.4:c.613T>C	p.Tyr205His	p.Y205H	ENST00000269305	NM_001126112.2	205	Tat/Cat																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983053	201983053	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	243	539	0	ENST00000359651.3:c.902G>C	p.Gly301Ala	p.G301A	ENST00000359651		301	gGc/gCc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149499592	149499592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	174	418	1	ENST00000261799.4:c.2681G>A	p.Trp894Ter	p.W894*	ENST00000261799	NM_002609.3	894	tGg/tAg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405999	157405999	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	153	431	0	ENST00000346085.5:c.2241C>G	p.Asn747Lys	p.N747K	ENST00000346085	NM_020732.3	747	aaC/aaG																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943641	9943641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	60	567	1	ENST00000330684.3:c.1300G>A	p.Val434Met	p.V434M	ENST00000330684	NM_001134407.1	434	Gtg/Atg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0053072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	163	346	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0053072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	146	275	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560913	9560913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	100	380	2	ENST00000353224.5:c.869C>T	p.Ser290Leu	p.S290L	ENST00000353224	NM_177990.2	290	tCg/tTg																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56780677	56780677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	44	412	0	ENST00000337432.4:c.692C>T	p.Ser231Leu	p.S231L	ENST00000337432	NM_058216.2	231	tCa/tTa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9778874	9778874	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	75	665	0	ENST00000377346.4:c.1143C>G	p.Ile381Met	p.I381M	ENST00000377346	NM_005026.3	381	atC/atG																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175838	24175838	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	81	523	0	ENST00000263121.7:c.1066C>A	p.Leu356Met	p.L356M	ENST00000263121	NM_003073.3	356	Ctg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0053078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	117	388	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959241	2959241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	84	532	0	ENST00000396946.4:c.2275C>T	p.Arg759Trp	p.R759W	ENST00000396946	NM_032415.4	759	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175217	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0053078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	104	261	0	ENST00000257430.4:c.3929dup	p.Ile1311AspfsTer4	p.I1311Dfs*4	ENST00000257430	NM_000038.5	1309	gaa/gAaa																																																																															
RET	5979	MSKCC	GRCh37	10	43596150	43596150	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	113	602	0	ENST00000355710.3:c.317G>T	p.Trp106Leu	p.W106L	ENST00000355710	NM_020975.4	106	tGg/tTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347687	89347687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	156	700	1	ENST00000301030.4:c.5263G>A	p.Ala1755Thr	p.A1755T	ENST00000301030	NM_001256183.1	1755	Gcc/Acc																																																																															
EP300	2033	MSKCC	GRCh37	22	41564853	41564853	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	119	496	1	ENST00000263253.7:c.4154G>T	p.Cys1385Phe	p.C1385F	ENST00000263253	NM_001429.3	1385	tGc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0053117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	198	555	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	142	426	0	ENST00000263967.3:c.3129G>C	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767326		P-0053117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	124	342	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097020	11097020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	223	664	0	ENST00000344626.4:c.511C>T	p.Pro171Ser	p.P171S	ENST00000344626	NM_003072.3	171	Cca/Tca																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060985	38060985	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	51	184	0	ENST00000250448.2:c.1004T>C	p.Leu335Pro	p.L335P	ENST00000250448	NM_004496.3	335	cTg/cCg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211645	36211645	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	172	524	0	ENST00000222270.7:c.1396T>C	p.Ser466Pro	p.S466P	ENST00000222270	NM_014727.1	466	Tcc/Ccc																																																																															
ATR	545	MSKCC	GRCh37	3	142257447	142257447	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1173633134		P-0053117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	104	435	0	ENST00000350721.4:c.3602G>A	p.Arg1201His	p.R1201H	ENST00000350721	NM_001184.3	1201	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175253	112175254	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0053117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	196	286	1	ENST00000257430.4:c.3963_3964del	p.Ser1321ArgfsTer10	p.S1321Rfs*10	ENST00000257430	NM_000038.5	1321	aGC/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0053123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	330	528	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0053123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	85	345	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38942414	38942414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	109	342	0	ENST00000357387.3:c.5119G>A	p.Glu1707Lys	p.E1707K	ENST00000357387	NM_152756.3	1707	Gaa/Aaa																																																																															
SDHD	6392	MSKCC	GRCh37	11	111965554	111965554	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	119	217	0	ENST00000375549.3:c.340T>G	p.Tyr114Asp	p.Y114D	ENST00000375549	NM_003002.3	114	Tat/Gat																																																																															
APC	324	MSKCC	GRCh37	5	112151256	112151260	+	frameshift_variant	Frame_Shift_Del	DEL	CACCT	CACCT	-			P-0053123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	95	365	0	ENST00000257430.4:c.900_904del	p.Pro301LysfsTer24	p.P301Kfs*24	ENST00000257430	NM_000038.5	300	gCACCT/g																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0053132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	33	454	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0053132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	33	656	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0053132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	15	283	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577059	7577068	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTTTCTTG	CCCTTTCTTG	-			P-0053132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	46	707	2	ENST00000269305.4:c.870_879del	p.Lys291SerfsTer51	p.K291Sfs*51	ENST00000269305	NM_001126112.2	290	cgCAAGAAAGGG/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0053139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	132	596	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0053139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	20	237	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0053139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	25	409	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357164	89357164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	144	660	1	ENST00000301030.4:c.470C>A	p.Thr157Asn	p.T157N	ENST00000301030	NM_001256183.1	157	aCc/aAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	89	421	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120002	70120002	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	76	94	0	ENST00000245479.2:c.1004G>A	p.Trp335Ter	p.W335*	ENST00000245479	NM_000346.3	335	tGg/tAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692908	89692908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	83	422	0	ENST00000371953.3:c.392C>T	p.Thr131Ile	p.T131I	ENST00000371953	NM_000314.4	131	aCt/aTt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118365419	118365419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	48	275	0	ENST00000534358.1:c.5300G>A	p.Arg1767His	p.R1767H	ENST00000534358	NM_005933.3	1767	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112162881	112162882	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0053195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	74	371	0	ENST00000257430.4:c.1486dup	p.Thr496AsnfsTer41	p.T496Nfs*41	ENST00000257430	NM_000038.5	495	-/A																																																																															
APC	324	MSKCC	GRCh37	5	112175330	112175865	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAGGCACAAAGCTGTTGAATTTTCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTATGTTCAGGAGACCCCACTCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAGTCGTTCGATTGCCAGCTCCGTTCAGAGTGAACCATGCAGTGGAATGGTAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACAAACCATGCCACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCTTGTTCATCCAGCCTGAGTGCTCTGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAAT	GCCAGGCACAAAGCTGTTGAATTTTCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTATGTTCAGGAGACCCCACTCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAGTCGTTCGATTGCCAGCTCCGTTCAGAGTGAACCATGCAGTGGAATGGTAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACAAACCATGCCACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCTTGTTCATCCAGCCTGAGTGCTCTGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAAT	-			P-0053195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	37	244	0	ENST00000257430.4:c.4042_4577del	p.Arg1348SerfsTer6	p.R1348Sfs*6	ENST00000257430	NM_000038.5	1347	GCCAGGCACAAAGCTGTTGAATTTTCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTATGTTCAGGAGACCCCACTCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAGTCGTTCGATTGCCAGCTCCGTTCAGAGTGAACCATGCAGTGGAATGGTAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACAAACCATGCCACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCTTGTTCATCCAGCCTGAGTGCTCTGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATg/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0053250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	194	653	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146945	38146945	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0053250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	187	658	0	ENST00000317025.8:c.3197del	p.Asn1066ThrfsTer16	p.N1066Tfs*16	ENST00000317025	NM_023034.1	1066	aAc/ac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032207	10032207	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	112	685	1	ENST00000330684.3:c.616C>A	p.Leu206Met	p.L206M	ENST00000330684	NM_001134407.1	206	Ctg/Atg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146062	38146062	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	205	711	0	ENST00000317025.8:c.3444G>C	p.Glu1148Asp	p.E1148D	ENST00000317025	NM_023034.1	1148	gaG/gaC																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146248	38146248	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	184	526	0	ENST00000317025.8:c.3258G>C	p.Gln1086His	p.Q1086H	ENST00000317025	NM_023034.1	1086	caG/caC																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146976	38146976	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	187	635	0	ENST00000317025.8:c.3166G>C	p.Glu1056Gln	p.E1056Q	ENST00000317025	NM_023034.1	1056	Gaa/Caa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0053268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	74	321	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0053268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	278	564	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112175039	112175040	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0053268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	38	164	0	ENST00000257430.4:c.3749_3750del	p.Lys1250SerfsTer5	p.K1250Sfs*5	ENST00000257430	NM_000038.5	1250	AAa/a																																																																															
FANCA	2175	MSKCC	GRCh37	16	89811386	89811386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	146	546	0	ENST00000389301.3:c.3607G>A	p.Gly1203Ser	p.G1203S	ENST00000389301	NM_000135.2	1203	Ggc/Agc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554518	63554518	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	151	458	0	ENST00000307078.5:c.221del	p.Pro74LeufsTer2	p.P74Lfs*2	ENST00000307078	NM_004655.3	74	cCt/ct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0053385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	109	508	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0053385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	31	270	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912813	50912813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	33	1117	0	ENST00000440232.2:c.2044C>T	p.Arg682Trp	p.R682W	ENST00000440232	NM_002691.3	682	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245344	153245344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	110	505	0	ENST00000281708.4:c.1847C>T	p.Thr616Ile	p.T616I	ENST00000281708	NM_033632.3	616	aCa/aTa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11177077	11177077	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	53	459	0	ENST00000361445.4:c.7000T>G	p.Leu2334Val	p.L2334V	ENST00000361445	NM_004958.3	2334	Tta/Gta																																																																															
TET1	80312	MSKCC	GRCh37	10	70405334	70405334	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	54	684	0	ENST00000373644.4:c.2848C>A	p.Pro950Thr	p.P950T	ENST00000373644	NM_030625.2	950	Cca/Aca																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883761	37883761	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	44	1079	1	ENST00000269571.5:c.3373G>T	p.Asp1125Tyr	p.D1125Y	ENST00000269571		1125	Gat/Tat																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730112	41730112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	45	448	0	ENST00000242208.4:c.417G>T	p.Glu139Asp	p.E139D	ENST00000242208	NM_002192.2	139	gaG/gaT																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986803	36986803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	12	135	0	ENST00000354822.5:c.886G>A	p.Asp296Asn	p.D296N	ENST00000354822	NM_001079668.2	296	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0053491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	281	649	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0053491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	74	416	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5218520	5218520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	39	686	1	ENST00000357368.4:c.3959G>A	p.Arg1320His	p.R1320H	ENST00000357368	NM_002850.3	1320	cGc/cAc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158622595	158622595	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	75	472	0	ENST00000263640.3:c.904A>G	p.Thr302Ala	p.T302A	ENST00000263640	NM_001105.4	302	Aca/Gca																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635236	87635236	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	90	535	0	ENST00000277120.3:c.2288T>G	p.Phe763Cys	p.F763C	ENST00000277120		763	tTc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0053749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	234	400	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0053749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	393	517	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0053749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	43	329	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81888168	81888168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	75	451	0	ENST00000359376.3:c.313G>A	p.Val105Ile	p.V105I	ENST00000359376	NM_002661.3	105	Gtc/Atc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117724358	117724358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	327	572	0	ENST00000368508.3:c.521C>T	p.Ala174Val	p.A174V	ENST00000368508	NM_002944.2	174	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435113	49435113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	50	621	0	ENST00000301067.7:c.6440C>T	p.Ala2147Val	p.A2147V	ENST00000301067	NM_003482.3	2147	gCg/gTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212112	5212112	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1262	1360	748	1	ENST00000357368.4:c.4919T>C	p.Phe1640Ser	p.F1640S	ENST00000357368	NM_002850.3	1640	tTc/tCc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356303	66356303	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	116	444	0	ENST00000273854.3:c.1194C>A	p.Cys398Ter	p.C398*	ENST00000273854	NM_004439.5	398	tgC/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0053758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	71	394	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894365		P-0053758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	25	505	0	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0053758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	242	494	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120013	70120013	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	70	161	0	ENST00000245479.2:c.1015C>T	p.Gln339Ter	p.Q339*	ENST00000245479	NM_000346.3	339	Cag/Tag																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323288	31323288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	20	419	0	ENST00000412585.2:c.701C>T	p.Pro234Leu	p.P234L	ENST00000412585	NM_005514.6	234	cCt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112170814	112170814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	20	643	0	ENST00000257430.4:c.1910G>A	p.Gly637Glu	p.G637E	ENST00000257430	NM_000038.5	637	gGg/gAg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44941861	44941938	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATAGTGAATCTACATCGTCAGATAAGTAAGTCATTTTTAATGTCCACTTAGTATTTCTTTTTAAAAGGCATGTTTCTA	ATAGTGAATCTACATCGTCAGATAAGTAAGTCATTTTTAATGTCCACTTAGTATTTCTTTTTAAAAGGCATGTTTCTA	-			P-0053758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	182	510	0	ENST00000377967.4:c.3188_3210-19del		p.X1063_splice	ENST00000377967	NM_021140.2	1063																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0053817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	200	399	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0053817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	145	551	2	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323133	31323133	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	223	938	0	ENST00000412585.2:c.856C>T	p.Gln286Ter	p.Q286*	ENST00000412585	NM_005514.6	286	Cag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117423	115117423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	192	352	0	ENST00000257566.3:c.751C>T	p.Arg251Trp	p.R251W	ENST00000257566	NM_016569.3	251	Cgg/Tgg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981121	201981121	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	256	765	3	ENST00000359651.3:c.200G>A	p.Trp67Ter	p.W67*	ENST00000359651		67	tGg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175508	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0053817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	215	335	0	ENST00000257430.4:c.4216_4217del	p.Gln1406GlufsTer2	p.Q1406Efs*2	ENST00000257430	NM_000038.5	1406	CAg/g																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900299	101900299	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	208	398	0	ENST00000374994.4:c.733G>C	p.Glu245Gln	p.E245Q	ENST00000374994	NM_004612.2	245	Gag/Cag																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0053824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	45	272	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	146	753	0	ENST00000269305.4:c.568C>A	p.Pro190Thr	p.P190T	ENST00000269305	NM_001126112.2	190	Cct/Act																																																																															
APC	324	MSKCC	GRCh37	5	112174998	112174999	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0053824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	32	214	0	ENST00000257430.4:c.3709_3710del	p.Gln1237GlufsTer2	p.Q1237Efs*2	ENST00000257430	NM_000038.5	1236	gCA/g																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831350	72831350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	20	452	0	ENST00000268489.5:c.5231C>T	p.Thr1744Met	p.T1744M	ENST00000268489	NM_006885.3	1744	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520006		P-0053834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	389	720	0	ENST00000269305.4:c.821T>G	p.Val274Gly	p.V274G	ENST00000269305	NM_001126112.2	274	gTt/gGt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395738	45395738	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	163	336	1	ENST00000262160.6:c.396G>A	p.Trp132Ter	p.W132*	ENST00000262160	NM_005901.5	132	tgG/tgA																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119582446	119582446	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	123	197	1	ENST00000316626.5:c.955C>T	p.Arg319Ter	p.R319*	ENST00000316626		319	Cga/Tga																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969947	81969947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	224	516	0	ENST00000359376.3:c.3016G>A	p.Gly1006Ser	p.G1006S	ENST00000359376	NM_002661.3	1006	Ggt/Agt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729709	41729709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	64	580	0	ENST00000242208.4:c.820G>A	p.Gly274Arg	p.G274R	ENST00000242208	NM_002192.2	274	Gga/Aga																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457308	67457308	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	584	706	0	ENST00000327367.4:c.282G>A	p.Trp94Ter	p.W94*	ENST00000327367	NM_005902.3	94	tgG/tgA																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384653	31384653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	336	760	0	ENST00000328111.2:c.1355G>A	p.Gly452Glu	p.G452E	ENST00000328111	NM_006892.3	452	gGg/gAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265717	41266209	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGG	ATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGG	-			P-0053834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	50	89	0	ENST00000349496.5:c.13+147_208del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1807107	1807107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	550	888	1	ENST00000260795.2:c.1438G>A	p.Glu480Lys	p.E480K	ENST00000260795		480	Gag/Aag																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59857646	59857657	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCTCCAGCTG	AGCCTCCAGCTG	T			P-0053834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	27	260	0	ENST00000259008.2:c.1900_1911delinsA	p.Gln634LysfsTer5	p.Q634Kfs*5	ENST00000259008	NM_032043.2	634	CAGCTGGAGGCT/A																																																																															
ATM	472	MSKCC	GRCh37	11	108236153	108236153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	183	599	0	ENST00000278616.4:c.9089G>T	p.Gly3030Val	p.G3030V	ENST00000278616	NM_000051.3	3030	gGa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577126	7577127	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAAAG			P-0053895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	299	721	0	ENST00000269305.4:c.807_811dup	p.Glu271AlafsTer76	p.E271Afs*76	ENST00000269305	NM_001126112.2	271	gag/gCTTTGag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022757	31022757	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	944	736	0	ENST00000375687.4:c.2242C>T	p.Gln748Ter	p.Q748*	ENST00000375687	NM_015338.5	748	Caa/Taa																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29099492	29099492	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0053895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	78	182	0	ENST00000328354.6:c.908+1G>T		p.X303_splice	ENST00000328354	NM_007194.3	303																																																																																
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0053895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	62	320	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0053895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	98	321	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0053896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	263	740	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0053896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	357	870	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0053896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	55	428	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068423	26068423	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0053896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	92	301	0	ENST00000435504.4:c.67A>T	p.Lys23Ter	p.K23*	ENST00000435504		23	Aaa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0053919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	51	412	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	31	226	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	26	181	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0053919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	124	483	0	ENST00000269305.4:c.673-1G>C		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
SOX9	6662	MSKCC	GRCh37	17	70119881	70119881	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	271	634	0	ENST00000245479.2:c.883G>C	p.Asp295His	p.D295H	ENST00000245479	NM_000346.3	295	Gac/Cac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374497	118374498	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0053919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	47	357	2	ENST00000534358.1:c.7896dup	p.Gly2633TrpfsTer13	p.G2633Wfs*13	ENST00000534358	NM_005933.3	2630	-/T																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998959	11998959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	64	303	0	ENST00000353533.5:c.461G>A	p.Arg154Gln	p.R154Q	ENST00000353533	NM_003010.3	154	cGg/cAg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712655	43712655	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	70	639	0	ENST00000382044.4:c.4529A>T	p.Lys1510Ile	p.K1510I	ENST00000382044	NM_001141980.1	1510	aAa/aTa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98240352	98240352	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	44	398	0	ENST00000331920.6:c.1332C>A	p.Ser444Arg	p.S444R	ENST00000331920	NM_000264.3	444	agC/agA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0053922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	255	760	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0053922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	71	270	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112174920	112174921	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0053922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	24	154	0	ENST00000257430.4:c.3631_3632del	p.Met1211ValfsTer5	p.M1211Vfs*5	ENST00000257430	NM_000038.5	1210	cAT/c																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67196695	67196701	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGGGG	AGGGGGG	-			P-0053922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	125	702	0	ENST00000312629.5:c.224_230del	p.Lys75ThrfsTer22	p.K75Tfs*22	ENST00000312629	NM_003952.2	75	aAGGGGGGc/ac																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533925	63533926	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0053922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	103	714	0	ENST00000307078.5:c.1228dup	p.Thr410AsnfsTer52	p.T410Nfs*52	ENST00000307078	NM_004655.3	410	aca/aAca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0053923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	75	258	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0053923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	111	494	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044850	47044850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	232	1210	1	ENST00000329236.7:c.1942C>T	p.Arg648Ter	p.R648*	ENST00000329236	NM_001204466.1	648	Cga/Tga																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2185874	2185874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	140	512	0	ENST00000398665.3:c.146C>T	p.Pro49Leu	p.P49L	ENST00000398665	NM_032482.2	49	cCg/cTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941064	71941064	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0053923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	205	981	0	ENST00000298229.2:c.939+1G>A		p.X313_splice	ENST00000298229	NM_001567.3	313																																																																																
H3F3B	3021	MSKCC	GRCh37	17	73775012	73775012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	100	466	1	ENST00000254810.4:c.161G>A	p.Arg54His	p.R54H	ENST00000254810	NM_005324.3	54	cGt/cAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713856	30713856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	302	704	0	ENST00000359013.4:c.1256G>A	p.Cys419Tyr	p.C419Y	ENST00000359013	NM_001024847.2	419	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112179035	112179036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0053923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	57	151	0	ENST00000257430.4:c.7749dup	p.Ala2584SerfsTer4	p.A2584Sfs*4	ENST00000257430	NM_000038.5	2582	gaa/gAaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877198	151877198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	179	342	0	ENST00000262189.6:c.7163G>A	p.Arg2388His	p.R2388H	ENST00000262189	NM_170606.2	2388	cGt/cAt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38139000	38139000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	74	134	0	ENST00000317025.8:c.3603G>A	p.Met1201Ile	p.M1201I	ENST00000317025	NM_023034.1	1201	atG/atA																																																																															
FLT4	2324	MSKCC	GRCh37	5	180039610	180039610	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs202140363		P-0053930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	118	897	0	ENST00000261937.6:c.3433C>T	p.Arg1145Cys	p.R1145C	ENST00000261937	NM_182925.4	1145	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0053930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	61	228	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0053930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	104	207	2	ENST00000257430.4:c.4128T>G	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taG																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120040	70120040	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	11	24	0	ENST00000245479.2:c.1042C>T	p.Gln348Ter	p.Q348*	ENST00000245479	NM_000346.3	348	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120247	70120247	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	266	847	2	ENST00000245479.2:c.1249del	p.Gln417ArgfsTer53	p.Q417Rfs*53	ENST00000245479	NM_000346.3	417	Cag/ag																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517955	176517955	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	249	787	2	ENST00000292408.4:c.453C>A	p.His151Gln	p.H151Q	ENST00000292408	NM_213647.1	151	caC/caA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0053958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	184	462	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0053958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	175	537	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0053958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	309	789	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CIC	23152	MSKCC	GRCh37	19	42791758	42791758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	178	899	0	ENST00000575354.2:c.644G>A	p.Arg215Gln	p.R215Q	ENST00000575354	NM_015125.3	215	cGg/cAg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31386409	31386409	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs572676072		P-0053958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	117	879	0	ENST00000328111.2:c.1634G>A	p.Arg545His	p.R545H	ENST00000328111	NM_006892.3	545	cGc/cAc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281344	49281344	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202077345		P-0053958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	119	803	0	ENST00000282018.3:c.391G>A	p.Val131Met	p.V131M	ENST00000282018	NM_020377.2	131	Gtg/Atg																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125496706	125496706	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	30	416	0	ENST00000428830.2:c.43C>G	p.Leu15Val	p.L15V	ENST00000428830	NM_001114121.2	15	Ctg/Gtg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557828	187557832	+	frameshift_variant	Frame_Shift_Del	DEL	TCCCG	TCCCG	-			P-0053958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	51	509	0	ENST00000441802.2:c.3879_3883del	p.Asp1293GlufsTer2	p.D1293Efs*2	ENST00000441802	NM_005245.3	1293	gaCGGGAat/gaat																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987214	2987214	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	34	465	0	ENST00000396946.4:c.215G>C	p.Arg72Pro	p.R72P	ENST00000396946	NM_032415.4	72	cGa/cCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0053975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	113	775	2	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0053975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	73	280	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11169376	11169376	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	36	620	0	ENST00000361445.4:c.7499T>A	p.Ile2500Asn	p.I2500N	ENST00000361445	NM_004958.3	2500	aTt/aAt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118924	70118926	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0053975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	231	1165	0	ENST00000245479.2:c.499_501del	p.Lys167del	p.K167del	ENST00000245479	NM_000346.3	166	AAG/-																																																																															
KDR	3791	MSKCC	GRCh37	4	55956143	55956143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	96	570	0	ENST00000263923.4:c.3172G>T	p.Asp1058Tyr	p.D1058Y	ENST00000263923	NM_002253.2	1058	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0054018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	322	519	4	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0054018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	191	327	8	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
APC	324	MSKCC	GRCh37	5	112175199	112175199	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	70	140	0	ENST00000257430.4:c.3910del	p.Ile1304Ter	p.I1304*	ENST00000257430	NM_000038.5	1303	cAa/ca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5258067	5258067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	173	598	9	ENST00000357368.4:c.667G>A	p.Gly223Ser	p.G223S	ENST00000357368	NM_002850.3	223	Ggc/Agc																																																																															
POLE	5426	MSKCC	GRCh37	12	133214705	133214705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	32	519	0	ENST00000320574.5:c.5573G>A	p.Arg1858His	p.R1858H	ENST00000320574	NM_006231.2	1858	cGc/cAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15278092	15278092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	79	824	1	ENST00000263388.2:c.5330C>T	p.Ala1777Val	p.A1777V	ENST00000263388	NM_000435.2	1777	gCt/gTt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419959	152419959	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	158	602	2	ENST00000206249.3:c.1646T>A	p.Leu549Gln	p.L549Q	ENST00000206249	NM_000125.3	549	cTa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0054058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	123	252	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0054058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	71	311	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578464	7578476	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGCCGGGCGG	GGGTGCCGGGCGG	-	rs876659215		P-0054058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	341	929	0	ENST00000269305.4:c.454_466del	p.Pro152AlafsTer14	p.P152Afs*14	ENST00000269305	NM_001126112.2	152	CCGCCCGGCACCCgc/gc																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158476	26158476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	106	655	0	ENST00000289316.2:c.79G>A	p.Gly27Arg	p.G27R	ENST00000289316	NM_138720.2	27	Ggg/Agg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170753	11170753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	235	816	0	ENST00000344626.4:c.4801C>T	p.Arg1601Trp	p.R1601W	ENST00000344626	NM_003072.3	1601	Cgg/Tgg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742444	145742444	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1199	109	932	0	ENST00000428558.2:c.344G>C	p.Gly115Ala	p.G115A	ENST00000428558	NM_004260.3	115	gGc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0054093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	222	716	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0054093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	149	360	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395736	45395736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	24	379	0	ENST00000262160.6:c.398G>A	p.Arg133His	p.R133H	ENST00000262160	NM_005901.5	133	cGc/cAc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981551	201981551	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	102	835	0	ENST00000359651.3:c.467del	p.Pro156GlnfsTer98	p.P156Qfs*98	ENST00000359651		155	gaC/ga																																																																															
APC	324	MSKCC	GRCh37	5	112174658	112174659	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	40	283	0	ENST00000257430.4:c.3371dup	p.Asn1124LysfsTer11	p.N1124Kfs*11	ENST00000257430	NM_000038.5	1123	caa/cAaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69103988	69103988	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	76	440	0	ENST00000288368.4:c.4378C>G	p.Pro1460Ala	p.P1460A	ENST00000288368	NM_024870.2	1460	Cca/Gca																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	18	189	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	199	590	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0054173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	26	165	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120049	70120049	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	17	23	0	ENST00000245479.2:c.1051C>T	p.Gln351Ter	p.Q351*	ENST00000245479	NM_000346.3	351	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112174424	112174424	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	30	187	0	ENST00000257430.4:c.3133C>T	p.Gln1045Ter	p.Q1045*	ENST00000257430	NM_000038.5	1045	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517946	187517946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	72	429	0	ENST00000441802.2:c.12748C>T	p.Pro4250Ser	p.P4250S	ENST00000441802	NM_005245.3	4250	Cct/Tct																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401739	139401756	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CCGTGCAGCGGCCCTTAC	CCGTGCAGCGGCCCTTAC	-			P-0054173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	71	739	0	ENST00000277541.6:c.3643+1_3643+18del		p.X1215_splice	ENST00000277541	NM_017617.3	1215																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	34	484	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149433673	149433673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	111	1046	3	ENST00000286301.3:c.2878G>A	p.Ala960Thr	p.A960T	ENST00000286301	NM_005211.3	960	Gcc/Acc																																																																															
POLE	5426	MSKCC	GRCh37	12	133202313	133202313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	142	1082	0	ENST00000320574.5:c.6575C>T	p.Ala2192Val	p.A2192V	ENST00000320574	NM_006231.2	2192	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398123121		P-0054231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	27	308	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175199	112175199	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	26	260	0	ENST00000257430.4:c.3910del	p.Ile1304Ter	p.I1304*	ENST00000257430	NM_000038.5	1303	cAa/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7579871	7579871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	170	1045	2	ENST00000269305.4:c.42del	p.Ser15ValfsTer29	p.S15Vfs*29	ENST00000269305	NM_001126112.2	14	ctG/ct																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223239	5223239	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1325	208	1345	1	ENST00000357368.4:c.2564C>A	p.Pro855Gln	p.P855Q	ENST00000357368	NM_002850.3	855	cCg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0054239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	89	428	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0054239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	227	779	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604789	48604789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	101	444	0	ENST00000342988.3:c.1611C>G	p.Asp537Glu	p.D537E	ENST00000342988	NM_005359.5	537	gaC/gaG																																																																															
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0054239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	99	231	0	ENST00000257430.4:c.4059_4060del	p.Glu1353AspfsTer21	p.E1353Dfs*21	ENST00000257430	NM_000038.5	1353	gaATtt/gatt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372019	55372019	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	119	511	0	ENST00000297316.4:c.709T>G	p.Phe237Val	p.F237V	ENST00000297316	NM_022454.3	237	Ttc/Gtc																																																																															
TET1	80312	MSKCC	GRCh37	10	70441195	70441195	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	152	482	0	ENST00000373644.4:c.4864C>T	p.Arg1622Ter	p.R1622*	ENST00000373644	NM_030625.2	1622	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	106	426	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	107	393	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112154	115112154	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	201	977	0	ENST00000257566.3:c.1586del	p.Gly529AlafsTer103	p.G529Afs*103	ENST00000257566	NM_016569.3	529	gGc/gc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	343	988	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	58	382	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67198936	67198936	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	65	638	1	ENST00000312629.5:c.407A>G	p.Tyr136Cys	p.Y136C	ENST00000312629	NM_003952.2	136	tAt/tGt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15950396	15950396	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201721277		P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	138	468	0	ENST00000268712.3:c.6548G>A	p.Arg2183His	p.R2183H	ENST00000268712	NM_006311.3	2183	cGc/cAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132428	11132428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	275	1102	1	ENST00000344626.4:c.2644G>A	p.Glu882Lys	p.E882K	ENST00000344626	NM_003072.3	882	Gaa/Aaa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274794	123274794	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	160	555	0	ENST00000358487.5:c.1124A>G	p.Tyr375Cys	p.Y375C	ENST00000358487	NM_000141.4	375	tAc/tGc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	116	498	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141492	11141492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	181	936	1	ENST00000344626.4:c.3469C>T	p.Arg1157Trp	p.R1157W	ENST00000344626	NM_003072.3	1157	Cgg/Tgg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638555	176638555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	187	677	0	ENST00000439151.2:c.3155G>A	p.Arg1052His	p.R1052H	ENST00000439151	NM_022455.4	1052	cGc/cAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276256	15276256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	188	840	0	ENST00000263388.2:c.5738C>T	p.Ala1913Val	p.A1913V	ENST00000263388	NM_000435.2	1913	gCg/gTg																																																																															
CBL	867	MSKCC	GRCh37	11	119149355	119149356	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATG	rs1358339544		P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	86	419	0	ENST00000264033.4:c.1380_1382dup	p.Asp460dup	p.D460dup	ENST00000264033	NM_005188.3	460	tat/tATGat																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900329	101900329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	110	286	0	ENST00000374994.4:c.763C>T	p.Arg255Cys	p.R255C	ENST00000374994	NM_004612.2	255	Cgt/Tgt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155325	185155325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	116	422	0	ENST00000265026.3:c.566C>T	p.Ala189Val	p.A189V	ENST00000265026	NM_004721.4	189	gCg/gTg																																																																															
RET	5979	MSKCC	GRCh37	10	43596110	43596110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	172	803	1	ENST00000355710.3:c.277G>A	p.Gly93Ser	p.G93S	ENST00000355710	NM_020975.4	93	Ggc/Agc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484772	57484772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	138	614	0	ENST00000371085.3:c.752G>A	p.Ser251Asn	p.S251N	ENST00000371085	NM_000516.4	251	aGc/aAc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78432609	78432609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	158	416	0	ENST00000370768.2:c.374G>A	p.Arg125His	p.R125H	ENST00000370768	NM_003902.3	125	cGc/cAc																																																																															
BLM	641	MSKCC	GRCh37	15	91347446	91347446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	123	324	2	ENST00000355112.3:c.3608C>T	p.Ala1203Val	p.A1203V	ENST00000355112	NM_000057.2	1203	gCg/gTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	214	516	7	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	178	814	1	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	128	565	0	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701231	43701231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	163	580	1	ENST00000382044.4:c.5464C>A	p.Leu1822Met	p.L1822M	ENST00000382044	NM_001141980.1	1822	Ctg/Atg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57480484	57480484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11554274		P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	121	339	0	ENST00000371085.3:c.479G>A	p.Arg160His	p.R160H	ENST00000371085	NM_000516.4	160	cGt/cAt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737644	145737644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	224	1204	0	ENST00000428558.2:c.3119C>T	p.Pro1040Leu	p.P1040L	ENST00000428558	NM_004260.3	1040	cCg/cTg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967091	18967092	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs1384543747		P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	64	1001	0	ENST00000262803.5:c.1814_1815del	p.Glu605AlafsTer17	p.E605Afs*17	ENST00000262803	NM_002911.3	602	gcAGag/gcag																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146583	185146583	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142468620		P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	139	561	0	ENST00000265026.3:c.214G>A	p.Val72Ile	p.V72I	ENST00000265026	NM_004721.4	72	Gta/Ata																																																																															
RXRA	6256	MSKCC	GRCh37	9	137309069	137309069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	249	1234	4	ENST00000481739.1:c.676G>A	p.Ala226Thr	p.A226T	ENST00000481739	NM_002957.4	226	Gcc/Acc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453399	40453399	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs759027671		P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	221	995	16	ENST00000345506.4:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000345506	NM_003152.3	366	Ccc/cc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098831	178098831	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1135118		P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	193	653	2	ENST00000397062.3:c.214G>A	p.Ala72Thr	p.A72T	ENST00000397062	NM_006164.4	72	Gct/Act																																																																															
BRAF	673	MSKCC	GRCh37	7	140534600	140534601	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	128	399	0	ENST00000288602.6:c.312dup	p.Asn105GlufsTer4	p.N105Efs*4	ENST00000288602	NM_004333.4	104	-/G																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118348798	118348798	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	95	285	0	ENST00000534358.1:c.3451C>T	p.Arg1151Ter	p.R1151*	ENST00000534358	NM_005933.3	1151	Cga/Tga																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702367	47702367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	85	319	0	ENST00000233146.2:c.1963G>A	p.Val655Ile	p.V655I	ENST00000233146	NM_000251.2	655	Gta/Ata																																																																															
TSC2	7249	MSKCC	GRCh37	16	2127615	2127615	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	195	828	0	ENST00000219476.3:c.2859del	p.Lys954AsnfsTer4	p.K954Nfs*4	ENST00000219476	NM_000548.3	952	Ccc/cc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017790	31017790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	215	980	3	ENST00000375687.4:c.652C>T	p.Arg218Cys	p.R218C	ENST00000375687	NM_015338.5	218	Cgt/Tgt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346225	89346225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	111	659	0	ENST00000301030.4:c.6725C>T	p.Ala2242Val	p.A2242V	ENST00000301030	NM_001256183.1	2242	gCg/gTg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678767	52678767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	57	316	0	ENST00000394830.3:c.852G>T	p.Lys284Asn	p.K284N	ENST00000394830	NM_018313.4	284	aaG/aaT																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660772	227660772	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	175	908	1	ENST00000305123.5:c.2683del	p.Glu895AsnfsTer48	p.E895Nfs*48	ENST00000305123	NM_005544.2	895	Gaa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86658452	86658452	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	55	165	0	ENST00000274376.6:c.1421del	p.Asn474ThrfsTer9	p.N474Tfs*9	ENST00000274376	NM_002890.2	473	Aaa/aa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38955713	38955713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	76	344	1	ENST00000357387.3:c.2593C>T	p.Arg865Cys	p.R865C	ENST00000357387	NM_152756.3	865	Cgt/Tgt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934378	39934378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	198	341	0	ENST00000378444.4:c.221G>A	p.Arg74His	p.R74H	ENST00000378444	NM_001123385.1	74	cGc/cAc																																																																															
MYD88	4615	MSKCC	GRCh37	3	38181423	38181423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	136	527	0	ENST00000396334.3:c.436G>A	p.Ala146Thr	p.A146T	ENST00000396334	NM_002468.4	146	Gct/Act																																																																															
ERG	2078	MSKCC	GRCh37	21	39795373	39795373	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	208	805	0	ENST00000288319.7:c.347del	p.Pro116GlnfsTer3	p.P116Qfs*3	ENST00000288319	NM_182918.3	116	cCa/ca																																																																															
HGF	3082	MSKCC	GRCh37	7	81335642	81335642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	99	378	0	ENST00000222390.5:c.1718G>A	p.Gly573Asp	p.G573D	ENST00000222390	NM_000601.4	573	gGc/gAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133219827	133219827	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147354120		P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	162	796	0	ENST00000320574.5:c.4534G>A	p.Val1512Ile	p.V1512I	ENST00000320574	NM_006231.2	1512	Gtc/Atc																																																																															
RET	5979	MSKCC	GRCh37	10	43601986	43601986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	268	1093	1	ENST00000355710.3:c.1030G>A	p.Gly344Ser	p.G344S	ENST00000355710	NM_020975.4	344	Ggc/Agc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200902	67200902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	175	762	1	ENST00000312629.5:c.890G>A	p.Arg297Gln	p.R297Q	ENST00000312629	NM_003952.2	297	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440044	49440044	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	208	830	0	ENST00000301067.7:c.4582C>T	p.Arg1528Trp	p.R1528W	ENST00000301067	NM_003482.3	1528	Cgg/Tgg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163318775	163318775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	29	367	0	ENST00000271452.3:c.1165G>A	p.Glu389Lys	p.E389K	ENST00000271452	NM_145697.2	389	Gaa/Aaa																																																																															
LMO1	4004	MSKCC	GRCh37	11	8252003	8252003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	202	997	0	ENST00000335790.3:c.74C>T	p.Ala25Val	p.A25V	ENST00000335790	NM_002315.2	25	gCg/gTg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137045	64137045	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	52	961	1	ENST00000334205.4:c.1556T>C	p.Phe519Ser	p.F519S	ENST00000334205	NM_003942.2	519	tTc/tCc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426600	49426602	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-	rs780886030		P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	230	924	0	ENST00000301067.7:c.11886_11888del	p.Gln3965del	p.Q3965del	ENST00000301067	NM_003482.3	3962	caACAg/cag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481917	56481917	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	62	763	0	ENST00000267101.3:c.845A>G	p.Tyr282Cys	p.Y282C	ENST00000267101	NM_001982.3	282	tAt/tGt																																																																															
MSI1	4440	MSKCC	GRCh37	12	120784000	120784000	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	229	1320	0	ENST00000257552.2:c.985del	p.Val329SerfsTer24	p.V329Sfs*24	ENST00000257552	NM_002442.3	329	Gtc/tc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913080	32913080	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	168	524	0	ENST00000380152.3:c.4593del	p.Val1532LeufsTer11	p.V1532Lfs*11	ENST00000380152		1530	Aaa/aa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30194847	30194847	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	144	520	1	ENST00000331968.5:c.298A>G	p.Lys100Glu	p.K100E	ENST00000331968	NM_002742.2	100	Aag/Gag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727469	88727469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	173	706	0	ENST00000360948.2:c.310G>A	p.Gly104Arg	p.G104R	ENST00000360948	NM_001012338.2	104	Gga/Aga																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434763	99434763	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	190	907	0	ENST00000268035.6:c.850A>G	p.Asn284Asp	p.N284D	ENST00000268035	NM_000875.3	284	Aac/Gac																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99472871	99472871	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	135	511	0	ENST00000268035.6:c.2867A>G	p.Tyr956Cys	p.Y956C	ENST00000268035	NM_000875.3	956	tAc/tGc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396962	396962	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	245	1039	2	ENST00000262320.3:c.64C>T	p.Arg22Ter	p.R22*	ENST00000262320	NM_003502.3	22	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993654	72993654	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	173	1030	0	ENST00000268489.5:c.391G>A	p.Gly131Arg	p.G131R	ENST00000268489	NM_006885.3	131	Ggg/Agg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81939078	81939079	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	184	679	0	ENST00000359376.3:c.1438dup	p.Glu480GlyfsTer9	p.E480Gfs*9	ENST00000359376	NM_002661.3	478	cag/caGg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81990396	81990396	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	125	608	0	ENST00000359376.3:c.3667T>G	p.Leu1223Val	p.L1223V	ENST00000359376	NM_002661.3	1223	Ttg/Gtg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243483	41243485	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-	rs80358341		P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	187	652	0	ENST00000357654.3:c.4063_4065del	p.Asn1355del	p.N1355del	ENST00000357654	NM_007294.3	1355	AAT/-																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59853911	59853911	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	120	400	0	ENST00000259008.2:c.1948A>G	p.Thr650Ala	p.T650A	ENST00000259008	NM_032043.2	650	Acc/Gcc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39644732	39644732	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	91	270	0	ENST00000262039.4:c.2461T>C	p.Ser821Pro	p.S821P	ENST00000262039	NM_002647.2	821	Tcc/Ccc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366161	15366161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	187	739	1	ENST00000263377.2:c.1994G>A	p.Arg665His	p.R665H	ENST00000263377	NM_058243.2	665	cGt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214894	36214894	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	185	1041	7	ENST00000222270.7:c.3325del	p.Arg1109GlufsTer73	p.R1109Efs*73	ENST00000222270	NM_014727.1	1107	aCc/ac																																																																															
ERF	2077	MSKCC	GRCh37	19	42753111	42753111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	192	1050	0	ENST00000222329.4:c.1153G>A	p.Gly385Arg	p.G385R	ENST00000222329	NM_006494.2	385	Gga/Aga																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909562	50909562	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	228	1022	0	ENST00000440232.2:c.1366C>T	p.Gln456Ter	p.Q456*	ENST00000440232	NM_002691.3	456	Cag/Tag																																																																															
MSH2	4436	MSKCC	GRCh37	2	47657081	47657081	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs267607950		P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	81	196	0	ENST00000233146.2:c.1276+1G>T		p.X426_splice	ENST00000233146	NM_000251.2	426																																																																																
AURKA	6790	MSKCC	GRCh37	20	54961465	54961465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	159	464	0	ENST00000312783.6:c.167G>A	p.Arg56His	p.R56H	ENST00000312783	NM_198436.1	56	cGc/cAc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62326274	62326274	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	271	1346	0	ENST00000508582.2:c.3362C>A	p.Ala1121Asp	p.A1121D	ENST00000508582		1121	gCt/gAt																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866331	42866331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	237	982	1	ENST00000398585.3:c.301G>A	p.Val101Ile	p.V101I	ENST00000398585	NM_001135099.1	101	Gtc/Atc																																																																															
EP300	2033	MSKCC	GRCh37	22	41566494	41566494	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	118	375	0	ENST00000263253.7:c.4371A>G	p.Ile1457Met	p.I1457M	ENST00000263253	NM_001429.3	1457	atA/atG																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940075	49940075	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	218	1117	0	ENST00000296474.3:c.968T>C	p.Val323Ala	p.V323A	ENST00000296474	NM_002447.2	323	gTg/gCg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390986	89390986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	137	436	0	ENST00000336596.2:c.1052C>T	p.Thr351Ile	p.T351I	ENST00000336596	NM_005233.5	351	aCa/aTa																																																																															
ATR	545	MSKCC	GRCh37	3	142257371	142257371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	124	376	0	ENST00000350721.4:c.3678G>T	p.Gln1226His	p.Q1226H	ENST00000350721	NM_001184.3	1226	caG/caT																																																																															
TET2	54790	MSKCC	GRCh37	4	106157987	106157987	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	89	298	1	ENST00000380013.4:c.2888A>T	p.Gln963Leu	p.Q963L	ENST00000380013	NM_001127208.2	963	cAg/cTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249402	153249402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	116	435	0	ENST00000281708.4:c.1376G>A	p.Gly459Glu	p.G459E	ENST00000281708	NM_033632.3	459	gGg/gAg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026886	6026886	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	48	525	0	ENST00000265849.7:c.1510G>T	p.Glu504Ter	p.E504*	ENST00000265849	NM_000535.5	504	Gag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55233014	55233014	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	126	528	0	ENST00000275493.2:c.1768del	p.His590ThrfsTer115	p.H590Tfs*115	ENST00000275493	NM_005228.3	588	ggC/gg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033240	69033240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	146	469	0	ENST00000288368.4:c.3680G>T	p.Ser1227Ile	p.S1227I	ENST00000288368	NM_024870.2	1227	aGc/aTc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209400	98209400	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111481152		P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	181	965	1	ENST00000331920.6:c.4138G>A	p.Ala1380Thr	p.A1380T	ENST00000331920	NM_000264.3	1380	Gcc/Acc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211548	98211549	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0054300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	151	781	2	ENST00000331920.6:c.3606dup	p.Ser1203GlnfsTer17	p.S1203Qfs*17	ENST00000331920	NM_000264.3	1202	-/C																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0054322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	133	373	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0054322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	75	510	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0054322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	285	946	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374949	45374952	+	frameshift_variant	Frame_Shift_Del	DEL	AGTG	AGTG	-			P-0054322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	35	560	0	ENST00000262160.6:c.891_894del	p.Thr298Ter	p.T298*	ENST00000262160	NM_005901.5	297	ctCACT/ct																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164782	36164782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	252	1512	1	ENST00000300305.3:c.1093G>A	p.Gly365Ser	p.G365S	ENST00000300305		365	Ggc/Agc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780812	9780812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	175	1066	1	ENST00000377346.4:c.1534C>T	p.Arg512Trp	p.R512W	ENST00000377346	NM_005026.3	512	Cgg/Tgg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344719	118344719	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	119	398	0	ENST00000534358.1:c.2845A>G	p.Thr949Ala	p.T949A	ENST00000534358	NM_005933.3	949	Act/Gct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101402	27101402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	90	370	0	ENST00000324856.7:c.4689del	p.Met1564Ter	p.M1564*	ENST00000324856	NM_006015.4	1562	Ccc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0054328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	193	487	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	93	276	0	ENST00000342988.3:c.1610A>T	p.Asp537Val	p.D537V	ENST00000342988	NM_005359.5	537	gAc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0054328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	154	370	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814729	139814729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	262	638	0	ENST00000247668.2:c.722G>A	p.Arg241Gln	p.R241Q	ENST00000247668	NM_021138.3	241	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112155002	112155002	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	87	433	0	ENST00000257430.4:c.1273G>T	p.Glu425Ter	p.E425*	ENST00000257430	NM_000038.5	425	Gaa/Taa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71096108	71096108	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	51	198	0	ENST00000318789.4:c.649C>T	p.Gln217Ter	p.Q217*	ENST00000318789	NM_032682.5	217	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175755	112175760	+	frameshift_variant	Frame_Shift_Del	DEL	ATTACA	ATTACA	T			P-0054328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	36	182	0	ENST00000257430.4:c.4464_4469delinsT	p.Leu1488PhefsTer24	p.L1488Ffs*24	ENST00000257430	NM_000038.5	1488	ttATTACAt/ttTt																																																																															
APC	324	MSKCC	GRCh37	5	112136980	112136980	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	84	211	0	ENST00000257430.4:c.734C>A	p.Ser245Ter	p.S245*	ENST00000257430	NM_000038.5	245	tCa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112174835	112174835	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0054330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	49	163	0	ENST00000257430.4:c.3544A>T	p.Lys1182Ter	p.K1182*	ENST00000257430	NM_000038.5	1182	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577139	7577151	+	frameshift_variant	Frame_Shift_Del	DEL	GTCCCAGTAGATT	GTCCCAGTAGATT	-			P-0054330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	159	520	0	ENST00000269305.4:c.787_799del	p.Asn263GlyfsTer78	p.N263Gfs*78	ENST00000269305	NM_001126112.2	263	AATCTACTGGGACgg/gg																																																																															
BCL2	596	MSKCC	GRCh37	18	60795985	60795986	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGCATCCTGCAGTTGGGGGAGAGG			P-0054330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	50	356	0	ENST00000333681.4:c.586-18_592dup	p.Phe198SerfsTer22	p.F198Sfs*22	ENST00000333681		198	ttt/tCCTCTCCCCCAACTGCAGGATGCCTtt																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225701	26225701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	332	679	0	ENST00000360408.1:c.319G>A	p.Asp107Asn	p.D107N	ENST00000360408	NM_003532.2	107	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0054412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	264	835	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0054412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	123	459	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	88	273	0	ENST00000257430.4:c.3944C>A	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910883	114910883	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0054412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	166	480	0	ENST00000543371.1:c.1001+1G>A		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153268144	153268144	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs920052554		P-0054413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	136	448	0	ENST00000281708.4:c.664C>T	p.Arg222Ter	p.R222*	ENST00000281708	NM_033632.3	222	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0054413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	565	682	1	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0054413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	58	241	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245431	153245439	+	inframe_deletion	In_Frame_Del	DEL	ATTCCACTT	ATTCCACTT	-			P-0054413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	120	634	0	ENST00000281708.4:c.1752_1760del	p.Ser585_Met587del	p.S585_M587del	ENST00000281708	NM_033632.3	584	acAAGTGGAATg/acg																																																																															
APC	324	MSKCC	GRCh37	5	112174521	112174521	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	141	401	0	ENST00000257430.4:c.3232del	p.Tyr1078IlefsTer48	p.Y1078Ifs*48	ENST00000257430	NM_000038.5	1077	gTt/gt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	44	424	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750600586		P-0054526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1345	275	1177	1	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0054526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	53	483	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	30	344	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55266503	55266503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	59	716	0	ENST00000275493.2:c.2795G>A	p.Arg932His	p.R932H	ENST00000275493	NM_005228.3	932	cGc/cAc																																																																															
TET2	54790	MSKCC	GRCh37	4	106180891	106180891	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	51	391	0	ENST00000380013.4:c.3919A>G	p.Arg1307Gly	p.R1307G	ENST00000380013	NM_001127208.2	1307	Agg/Ggg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56488250	56488250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	124	716	0	ENST00000267101.3:c.1769C>T	p.Pro590Leu	p.P590L	ENST00000267101	NM_001982.3	590	cCc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112174295	112174296	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCGA			P-0054526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	22	351	0	ENST00000257430.4:c.3007_3010dup	p.Leu1004ArgfsTer5	p.L1004Rfs*5	ENST00000257430	NM_000038.5	1002	gcc/gCCGAcc																																																																															
IL10	3586	MSKCC	GRCh37	1	206944256	206944256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	114	380	0	ENST00000423557.1:c.374G>A	p.Arg125His	p.R125H	ENST00000423557	NM_000572.2	125	cGc/cAc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870953	12870953	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	96	381	1	ENST00000228872.4:c.180G>T	p.Trp60Cys	p.W60C	ENST00000228872	NM_004064.3	60	tgG/tgT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	48	434	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520009		P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	88	393	1	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	59	345	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	79	275	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55220274	55220274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	163	738	1	ENST00000275493.2:c.664C>T	p.Arg222Cys	p.R222C	ENST00000275493	NM_005228.3	222	Cgc/Tgc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193099338	193099338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	83	340	0	ENST00000367435.3:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000367435	NM_024529.4	91	cGa/cAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	75	453	1	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126756	5126756	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	75	400	0	ENST00000381652.3:c.3364C>T	p.Arg1122Ter	p.R1122*	ENST00000381652	NM_004972.3	1122	Cga/Tga																																																																															
CDH1	999	MSKCC	GRCh37	16	68844193	68844193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	140	614	2	ENST00000261769.5:c.781G>A	p.Glu261Lys	p.E261K	ENST00000261769	NM_004360.3	261	Gaa/Aaa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	140	467	1	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127915943	127915943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	104	443	0	ENST00000373547.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000373547	NM_002721.4	180	Gaa/Aaa																																																																															
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519945		P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	99	521	1	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411783	63411783	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	141	384	0	ENST00000330258.3:c.1384G>T	p.Glu462Ter	p.E462*	ENST00000330258	NM_152424.3	462	Gaa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	238	533	1	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	132	312	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112178211	112178211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	70	389	1	ENST00000257430.4:c.6920C>T	p.Ser2307Leu	p.S2307L	ENST00000257430	NM_000038.5	2307	tCg/tTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638555	176638555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	146	601	0	ENST00000439151.2:c.3155G>A	p.Arg1052His	p.R1052H	ENST00000439151	NM_022455.4	1052	cGc/cAc																																																																															
KIT	3815	MSKCC	GRCh37	4	55564477	55564477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	70	451	1	ENST00000288135.5:c.365G>A	p.Arg122His	p.R122H	ENST00000288135	NM_000222.2	122	cGc/cAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11307902	11307902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	46	620	0	ENST00000361445.4:c.1090G>T	p.Asp364Tyr	p.D364Y	ENST00000361445	NM_004958.3	364	Gac/Tac																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068393	26068393	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	226	411	0	ENST00000435504.4:c.97G>T	p.Glu33Ter	p.E33*	ENST00000435504		33	Gaa/Taa																																																																															
ATR	545	MSKCC	GRCh37	3	142278247	142278247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	129	498	0	ENST00000350721.4:c.1578G>T	p.Lys526Asn	p.K526N	ENST00000350721	NM_001184.3	526	aaG/aaT																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485115	57485115	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754097818		P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	70	358	0	ENST00000371085.3:c.949C>T	p.Arg317Cys	p.R317C	ENST00000371085	NM_000516.4	317	Cgc/Tgc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862850	9862850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	149	678	0	ENST00000330684.3:c.2453C>T	p.Ala818Val	p.A818V	ENST00000330684	NM_001134407.1	818	gCg/gTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109744	115109744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	47	740	0	ENST00000257566.3:c.2134G>A	p.Ala712Thr	p.A712T	ENST00000257566	NM_016569.3	712	Gcg/Acg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	94	465	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29562982	29562982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	99	459	0	ENST00000358273.4:c.3917G>A	p.Arg1306Gln	p.R1306Q	ENST00000358273	NM_001042492.2	1306	cGa/cAa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166818	32166818	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	226	896	1	ENST00000375023.3:c.4420C>T	p.Arg1474Ter	p.R1474*	ENST00000375023	NM_004557.3	1474	Cga/Tga																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033753	48033753	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	76	308	0	ENST00000234420.5:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000234420	NM_000179.2	1322	Gaa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	100	352	0	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736176	204736176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	99	376	0	ENST00000302823.3:c.533G>A	p.Ser178Asn	p.S178N	ENST00000302823	NM_005214.4	178	aGc/aAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914859	32914860	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	74	378	0	ENST00000380152.3:c.6373dup	p.Thr2125AsnfsTer4	p.T2125Nfs*4	ENST00000380152		2123	gaa/gAaa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685312	86685312	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	36	163	0	ENST00000274376.6:c.3028C>T	p.Arg1010Ter	p.R1010*	ENST00000274376	NM_002890.2	1010	Cga/Tga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16012219	16012219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	30	371	0	ENST00000268712.3:c.2063G>A	p.Arg688Gln	p.R688Q	ENST00000268712	NM_006311.3	688	cGa/cAa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291528	10291528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	27	506	0	ENST00000340748.4:c.151G>A	p.Glu51Lys	p.E51K	ENST00000340748		51	Gaa/Aaa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17950376	17950376	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	204	785	1	ENST00000458235.1:c.1351C>T	p.Arg451Ter	p.R451*	ENST00000458235	NM_000215.3	451	Cga/Tga																																																																															
FLT3	2322	MSKCC	GRCh37	13	28622451	28622451	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	92	496	0	ENST00000241453.7:c.1166C>A	p.Ser389Ter	p.S389*	ENST00000241453	NM_004119.2	389	tCa/tAa																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175871	24175871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	134	559	2	ENST00000263121.7:c.1099G>A	p.Asp367Asn	p.D367N	ENST00000263121	NM_003073.3	367	Gac/Aac																																																																															
RIT1	6016	MSKCC	GRCh37	1	155880270	155880270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	82	419	0	ENST00000368323.3:c.134G>A	p.Arg45Gln	p.R45Q	ENST00000368323	NM_006912.5	45	cGa/cAa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86679577	86679577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	87	414	1	ENST00000274376.6:c.2738G>A	p.Arg913Gln	p.R913Q	ENST00000274376	NM_002890.2	913	cGg/cAg																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62309650	62309650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	137	667	1	ENST00000508582.2:c.1060G>A	p.Asp354Asn	p.D354N	ENST00000508582		354	Gat/Aat																																																																															
AXL	558	MSKCC	GRCh37	19	41763489	41763489	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201238916		P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	118	624	1	ENST00000301178.4:c.2288G>A	p.Arg763His	p.R763H	ENST00000301178	NM_021913.4	763	cGc/cAc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641280	3641280	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140600202		P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	133	723	0	ENST00000294008.3:c.2359G>A	p.Glu787Lys	p.E787K	ENST00000294008	NM_032444.2	787	Gaa/Aaa																																																																															
ATRX	546	MSKCC	GRCh37	X	76849266	76849266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	79	209	1	ENST00000373344.5:c.6010G>T	p.Asp2004Tyr	p.D2004Y	ENST00000373344	NM_000489.3	2004	Gat/Tat																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45795032	45795032	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	151	572	0	ENST00000372115.3:c.1554C>A	p.Phe518Leu	p.F518L	ENST00000372115	NM_001048171.1	518	ttC/ttA																																																																															
RAC1	5879	MSKCC	GRCh37	7	6431650	6431650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	127	477	0	ENST00000356142.4:c.203G>A	p.Arg68His	p.R68H	ENST00000356142	NM_018890.3	68	cGc/cAc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745593	162745593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	126	456	0	ENST00000367921.3:c.2008G>A	p.Glu670Lys	p.E670K	ENST00000367921	NM_006182.2	670	Gag/Aag																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103519117	103519117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	103	557	0	ENST00000355739.4:c.2455C>T	p.Arg819Trp	p.R819W	ENST00000355739	NM_000123.3	819	Cgg/Tgg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40872305	40872305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	102	607	0	ENST00000428826.2:c.650G>A	p.Arg217Gln	p.R217Q	ENST00000428826		217	cGa/cAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770575	40770575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1294592345		P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	125	479	0	ENST00000373198.4:c.2807G>A	p.Arg936Gln	p.R936Q	ENST00000373198	NM_133170.3	936	cGa/cAa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090886	5090886	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	23	166	0	ENST00000381652.3:c.3034G>T	p.Glu1012Ter	p.E1012*	ENST00000381652	NM_004972.3	1012	Gaa/Taa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2963878	2963878	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	127	622	3	ENST00000396946.4:c.1929C>A	p.Phe643Leu	p.F643L	ENST00000396946	NM_032415.4	643	ttC/ttA																																																																															
SPEN	23013	MSKCC	GRCh37	1	16248837	16248837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	75	366	0	ENST00000375759.3:c.1843G>A	p.Glu615Lys	p.E615K	ENST00000375759	NM_015001.2	615	Gaa/Aaa																																																																															
MITF	4286	MSKCC	GRCh37	3	69986988	69986988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	96	523	0	ENST00000352241.4:c.370G>A	p.Glu124Lys	p.E124K	ENST00000352241	NM_198159.2	124	Gaa/Aaa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932040	36932040	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	146	732	0	ENST00000361632.4:c.2429A>G	p.Asp810Gly	p.D810G	ENST00000361632		810	gAc/gGc																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39317430	39317430	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	106	411	0	ENST00000373001.3:c.757-1G>T		p.X253_splice	ENST00000373001	NM_022157.3	253																																																																																
TP53BP1	7158	MSKCC	GRCh37	15	43749297	43749297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	54	525	1	ENST00000382044.4:c.1509G>T	p.Lys503Asn	p.K503N	ENST00000382044	NM_001141980.1	503	aaG/aaT																																																																															
STAG2	10735	MSKCC	GRCh37	X	123176490	123176490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	57	107	0	ENST00000218089.9:c.457G>A	p.Asp153Asn	p.D153N	ENST00000218089	NM_001042749.1	153	Gat/Aat																																																																															
ATM	472	MSKCC	GRCh37	11	108206668	108206668	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	74	344	0	ENST00000278616.4:c.8248T>G	p.Leu2750Val	p.L2750V	ENST00000278616	NM_000051.3	2750	Tta/Gta																																																																															
E2F3	1871	MSKCC	GRCh37	6	20480168	20480168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	74	297	1	ENST00000346618.3:c.485G>A	p.Arg162Gln	p.R162Q	ENST00000346618	NM_001949.4	162	cGa/cAa																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643536	38643536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	67	451	0	ENST00000299084.4:c.1006G>A	p.Val336Ile	p.V336I	ENST00000299084	NM_152594.2	336	Gta/Ata																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510219	187510219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	137	498	0	ENST00000441802.2:c.13294G>A	p.Glu4432Lys	p.E4432K	ENST00000441802	NM_005245.3	4432	Gaa/Aaa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477161	67477161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	146	694	0	ENST00000327367.4:c.968G>A	p.Arg323His	p.R323H	ENST00000327367	NM_005902.3	323	cGc/cAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348079	89348079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	208	939	0	ENST00000301030.4:c.4871C>T	p.Ala1624Val	p.A1624V	ENST00000301030	NM_001256183.1	1624	gCg/gTg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11022897	11022897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	200	780	0	ENST00000327064.4:c.596C>T	p.Ser199Leu	p.S199L	ENST00000327064	NM_199141.1	199	tCg/tTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662769	227662769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	170	703	4	ENST00000305123.5:c.686C>T	p.Ala229Val	p.A229V	ENST00000305123	NM_005544.2	229	gCc/gTc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041067	29041067	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	99	467	0	ENST00000282397.4:c.361G>T	p.Glu121Ter	p.E121*	ENST00000282397	NM_002019.4	121	Gaa/Taa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261767	16261767	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759881159		P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	129	576	1	ENST00000375759.3:c.9032G>A	p.Arg3011Gln	p.R3011Q	ENST00000375759	NM_015001.2	3011	cGa/cAa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212459	5212459	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182037655		P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	180	765	0	ENST00000357368.4:c.4658C>T	p.Thr1553Met	p.T1553M	ENST00000357368	NM_002850.3	1553	aCg/aTg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123176484	123176484	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	60	114	0	ENST00000218089.9:c.451G>T	p.Glu151Ter	p.E151*	ENST00000218089	NM_001042749.1	151	Gaa/Taa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18719947	18719947	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	98	396	0	ENST00000266497.5:c.3844C>A	p.His1282Asn	p.H1282N	ENST00000266497		1282	Cat/Aat																																																																															
RAD50	10111	MSKCC	GRCh37	5	131978051	131978051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	87	346	0	ENST00000265335.6:c.3934C>A	p.His1312Asn	p.H1312N	ENST00000265335		1312	Cat/Aat																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487185	56487185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	76	502	1	ENST00000267101.3:c.1331G>A	p.Arg444Gln	p.R444Q	ENST00000267101	NM_001982.3	444	cGa/cAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152009026	152009026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	64	261	0	ENST00000262189.6:c.596G>A	p.Arg199Gln	p.R199Q	ENST00000262189	NM_170606.2	199	cGa/cAa																																																																															
HGF	3082	MSKCC	GRCh37	7	81339499	81339499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	88	450	0	ENST00000222390.5:c.1505G>A	p.Arg502Gln	p.R502Q	ENST00000222390	NM_000601.4	502	cGa/cAa																																																																															
RB1	5925	MSKCC	GRCh37	13	48937017	48937017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	100	364	1	ENST00000267163.4:c.785G>A	p.Arg262Gln	p.R262Q	ENST00000267163	NM_000321.2	262	cGg/cAg																																																																															
MPL	4352	MSKCC	GRCh37	1	43805081	43805081	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	149	668	0	ENST00000372470.3:c.531G>T	p.Lys177Asn	p.K177N	ENST00000372470	NM_005373.2	177	aaG/aaT																																																																															
UPF1	5976	MSKCC	GRCh37	19	18968288	18968288	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776533487		P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	62	907	0	ENST00000262803.5:c.2128G>A	p.Ala710Thr	p.A710T	ENST00000262803	NM_002911.3	710	Gcc/Acc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575128	48575128	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	71	345	0	ENST00000342988.3:c.322G>T	p.Glu108Ter	p.E108*	ENST00000342988	NM_005359.5	108	Gaa/Taa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47698123	47698123	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	39	254	0	ENST00000233146.2:c.1681G>T	p.Glu561Ter	p.E561*	ENST00000233146	NM_000251.2	561	Gaa/Taa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14042164	14042164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	66	258	1	ENST00000311895.7:c.2711C>A	p.Ser904Tyr	p.S904Y	ENST00000311895	NM_005236.2	904	tCt/tAt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266735	18266735	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80233027		P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	170	771	0	ENST00000222254.8:c.46C>T	p.Arg16Cys	p.R16C	ENST00000222254	NM_005027.3	16	Cgc/Tgc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190800	11190800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	103	553	0	ENST00000361445.4:c.5399C>T	p.Ala1800Val	p.A1800V	ENST00000361445	NM_004958.3	1800	gCt/gTt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11193141	11193141	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	148	526	0	ENST00000361445.4:c.5360A>G	p.Tyr1787Cys	p.Y1787C	ENST00000361445	NM_004958.3	1787	tAc/tGc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166434	118166434	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	80	362	1	ENST00000369448.3:c.944A>G	p.Asn315Ser	p.N315S	ENST00000369448	NM_017709.3	315	aAc/aGc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838032	156838032	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200167354		P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	190	1009	1	ENST00000524377.1:c.565G>A	p.Ala189Thr	p.A189T	ENST00000524377	NM_002529.3	189	Gcc/Acc																																																																															
SDHC	6391	MSKCC	GRCh37	1	161298208	161298208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	127	405	0	ENST00000367975.2:c.100G>A	p.Ala34Thr	p.A34T	ENST00000367975	NM_003001.3	34	Gcc/Acc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175916336	175916336	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	83	290	0	ENST00000367669.3:c.2173A>C	p.Ile725Leu	p.I725L	ENST00000367669	NM_022457.5	725	Att/Ctt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193104542	193104542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	86	357	0	ENST00000367435.3:c.329G>A	p.Arg110Lys	p.R110K	ENST00000367435	NM_024529.4	110	aGa/aAa																																																																															
PARP1	142	MSKCC	GRCh37	1	226549240	226549240	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	79	296	0	ENST00000366794.5:c.2966A>G	p.Tyr989Cys	p.Y989C	ENST00000366794	NM_001618.3	989	tAc/tGc																																																																															
PARP1	142	MSKCC	GRCh37	1	226555188	226555188	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	85	484	0	ENST00000366794.5:c.2399A>G	p.Asp800Gly	p.D800G	ENST00000366794	NM_001618.3	800	gAc/gGc																																																																															
FH	2271	MSKCC	GRCh37	1	241663803	241663803	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	45	248	0	ENST00000366560.3:c.1324A>G	p.Thr442Ala	p.T442A	ENST00000366560	NM_000143.3	442	Aca/Gca																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716133	243716133	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	93	502	0	ENST00000263826.5:c.1061T>G	p.Leu354Arg	p.L354R	ENST00000263826	NM_005465.4	354	cTt/cGt																																																																															
SMYD3	64754	MSKCC	GRCh37	1	245927345	245927345	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	44	390	0	ENST00000388985.4:c.1183C>A	p.Leu395Met	p.L395M	ENST00000388985		395	Ctg/Atg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100330	8100330	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	134	884	0	ENST00000346208.3:c.304G>T	p.Ala102Ser	p.A102S	ENST00000346208		102	Gcc/Tcc																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724234	112724234	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	90	406	1	ENST00000369452.4:c.118G>T	p.Glu40Ter	p.E40*	ENST00000369452	NM_007373.3	40	Gaa/Taa																																																																															
CCND1	595	MSKCC	GRCh37	11	69457955	69457956	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	111	442	0	ENST00000227507.2:c.355_356insA	p.Leu119HisfsTer44	p.L119Hfs*44	ENST00000227507	NM_053056.2	119	ctg/cAtg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77047207	77047207	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	119	565	0	ENST00000356341.3:c.1337A>G	p.Asp446Gly	p.D446G	ENST00000356341	NM_002576.4	446	gAc/gGc																																																																															
YAP1	10413	MSKCC	GRCh37	11	102100655	102100655	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	70	285	0	ENST00000282441.5:c.1499T>C	p.Phe500Ser	p.F500S	ENST00000282441	NM_001130145.2	500	tTt/tCt																																																																															
ATM	472	MSKCC	GRCh37	11	108121628	108121628	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	126	449	0	ENST00000278616.4:c.1436A>G	p.Asp479Gly	p.D479G	ENST00000278616	NM_000051.3	479	gAt/gGt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373316	118373316	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	112	444	0	ENST00000534358.1:c.6709A>G	p.Thr2237Ala	p.T2237A	ENST00000534358	NM_005933.3	2237	Act/Gct																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118390750	118390750	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	110	388	0	ENST00000534358.1:c.11400A>C	p.Glu3800Asp	p.E3800D	ENST00000534358	NM_005933.3	3800	gaA/gaC																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644550	21644550	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	109	527	0	ENST00000421138.2:c.117A>C	p.Lys39Asn	p.K39N	ENST00000421138		39	aaA/aaC																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231412	46231412	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	67	367	0	ENST00000334344.6:c.1252A>C	p.Thr418Pro	p.T418P	ENST00000334344	NM_152641.2	418	Aca/Cca																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478928	56478928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	187	710	2	ENST00000267101.3:c.384C>A	p.Ser128Arg	p.S128R	ENST00000267101	NM_001982.3	128	agC/agA																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863223	57863223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	125	551	0	ENST00000228682.2:c.1318C>T	p.Pro440Ser	p.P440S	ENST00000228682	NM_005269.2	440	Cca/Tca																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233425	69233425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	88	372	0	ENST00000462284.1:c.1290G>T	p.Glu430Asp	p.E430D	ENST00000462284	NM_002392.5	430	gaG/gaT																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112047	115112047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	211	862	1	ENST00000257566.3:c.1693G>A	p.Ala565Thr	p.A565T	ENST00000257566	NM_016569.3	565	Gct/Act																																																																															
POLE	5426	MSKCC	GRCh37	12	133235942	133235942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	146	699	0	ENST00000320574.5:c.3214G>T	p.Ala1072Ser	p.A1072S	ENST00000320574	NM_006231.2	1072	Gca/Tca																																																																															
FLT1	2321	MSKCC	GRCh37	13	28979925	28979925	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	109	406	0	ENST00000282397.4:c.1543A>C	p.Lys515Gln	p.K515Q	ENST00000282397	NM_002019.4	515	Aag/Cag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437887	110437887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	34	99	0	ENST00000375856.3:c.514G>T	p.Gly172Cys	p.G172C	ENST00000375856	NM_003749.2	172	Ggc/Tgc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986718	36986718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	16	40	0	ENST00000354822.5:c.971C>T	p.Ala324Val	p.A324V	ENST00000354822	NM_001079668.2	324	gCg/gTg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986977	36986977	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	133	511	0	ENST00000354822.5:c.712T>C	p.Trp238Arg	p.W238R	ENST00000354822	NM_001079668.2	238	Tgg/Cgg																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68290271	68290271	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	92	388	0	ENST00000487270.1:c.11A>C	p.Lys4Thr	p.K4T	ENST00000487270	NM_133509.3	4	aAg/aCg																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675053	40675053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	142	714	2	ENST00000249776.8:c.17C>T	p.Ala6Val	p.A6V	ENST00000249776	NM_033286.3	6	gCc/gTc																																																																															
MGA	23269	MSKCC	GRCh37	15	42058743	42058743	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	42	208	0	ENST00000219905.7:c.8463G>T	p.Glu2821Asp	p.E2821D	ENST00000219905	NM_001164273.1	2821	gaG/gaT																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748966	43748966	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	182	737	0	ENST00000382044.4:c.1840G>T	p.Glu614Ter	p.E614*	ENST00000382044	NM_001141980.1	614	Gaa/Taa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99192813	99192813	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	126	462	2	ENST00000268035.6:c.3G>T	p.Met1?	p.M1?	ENST00000268035	NM_000875.3	1	atG/atT																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121578	2121578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	219	862	0	ENST00000219476.3:c.1907G>A	p.Gly636Glu	p.G636E	ENST00000219476	NM_000548.3	636	gGa/gAa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50784074	50784074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	78	581	0	ENST00000398568.2:c.465G>T	p.Glu155Asp	p.E155D	ENST00000398568	NM_001042412.1	155	gaG/gaT																																																																															
CYLD	1540	MSKCC	GRCh37	16	50784076	50784076	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	123	577	0	ENST00000398568.2:c.467G>T	p.Arg156Met	p.R156M	ENST00000398568	NM_001042412.1	156	aGg/aTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969903	81969903	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	157	563	1	ENST00000359376.3:c.2972G>T	p.Arg991Ile	p.R991I	ENST00000359376	NM_002661.3	991	aGa/aTa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89845218	89845218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	137	502	0	ENST00000389301.3:c.1817C>T	p.Ser606Phe	p.S606F	ENST00000389301	NM_000135.2	606	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577073	7577073	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	186	745	0	ENST00000269305.4:c.865C>A	p.Leu289Ile	p.L289I	ENST00000269305	NM_001126112.2	289	Ctc/Atc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41215370	41215370	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	105	435	0	ENST00000357654.3:c.5173G>T	p.Glu1725Ter	p.E1725*	ENST00000357654	NM_007294.3	1725	Gaa/Taa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59876524	59876524	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	111	416	0	ENST00000259008.2:c.1277T>C	p.Val426Ala	p.V426A	ENST00000259008	NM_032043.2	426	gTc/gCc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372033	45372033	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	85	385	0	ENST00000262160.6:c.1135+1G>A		p.X379_splice	ENST00000262160	NM_005901.5	379																																																																																
MAP2K2	5605	MSKCC	GRCh37	19	4117466	4117466	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	102	590	0	ENST00000262948.5:c.254T>C	p.Val85Ala	p.V85A	ENST00000262948	NM_030662.3	85	gTg/gCg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610363	10610363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	184	862	0	ENST00000171111.5:c.347G>A	p.Arg116Gln	p.R116Q	ENST00000171111	NM_203500.1	116	cGg/cAg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464543	25464543	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	145	827	0	ENST00000264709.3:c.1970T>C	p.Val657Ala	p.V657A	ENST00000264709	NM_175629.2	657	gTg/gCg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47635680	47635680	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	102	379	0	ENST00000233146.2:c.352T>C	p.Tyr118His	p.Y118H	ENST00000233146	NM_000251.2	118	Tat/Cat																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212286822	212286822	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	73	327	0	ENST00000342788.4:c.2874G>T	p.Met958Ile	p.M958I	ENST00000342788	NM_005235.2	958	atG/atT																																																																															
CUL3	8452	MSKCC	GRCh37	2	225339074	225339074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	70	299	0	ENST00000264414.4:c.2195C>T	p.Ala732Val	p.A732V	ENST00000264414	NM_003590.4	732	gCg/gTg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46271030	46271030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	98	506	1	ENST00000371998.3:c.3154G>A	p.Ala1052Thr	p.A1052T	ENST00000371998		1052	Gca/Aca																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171721	36171721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	111	406	0	ENST00000300305.3:c.844G>A	p.Asp282Asn	p.D282N	ENST00000300305		282	Gat/Aat																																																																															
NF2	4771	MSKCC	GRCh37	22	30057206	30057206	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	100	477	0	ENST00000338641.4:c.688A>G	p.Thr230Ala	p.T230A	ENST00000338641	NM_000268.3	230	Aca/Gca																																																																															
EP300	2033	MSKCC	GRCh37	22	41574751	41574751	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	182	757	1	ENST00000263253.7:c.7036T>C	p.Ser2346Pro	p.S2346P	ENST00000263253	NM_001429.3	2346	Tcc/Ccc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626036	12626036	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	113	470	0	ENST00000251849.4:c.1924T>C	p.Ser642Pro	p.S642P	ENST00000251849	NM_002880.3	642	Tcc/Ccc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162116	47162116	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	89	386	0	ENST00000409792.3:c.4010A>T	p.Glu1337Val	p.E1337V	ENST00000409792	NM_014159.6	1337	gAa/gTa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162781	47162781	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	52	364	0	ENST00000409792.3:c.3345A>C	p.Glu1115Asp	p.E1115D	ENST00000409792	NM_014159.6	1115	gaA/gaC																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164969	47164969	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	75	269	0	ENST00000409792.3:c.1157A>G	p.Asp386Gly	p.D386G	ENST00000409792	NM_014159.6	386	gAt/gGt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204753	128204753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	108	900	1	ENST00000341105.2:c.688C>T	p.Arg230Cys	p.R230C	ENST00000341105	NM_032638.4	230	Cgc/Tgc																																																																															
ATR	545	MSKCC	GRCh37	3	142272146	142272146	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	107	428	0	ENST00000350721.4:c.2728G>T	p.Glu910Ter	p.E910*	ENST00000350721	NM_001184.3	910	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917543	178917543	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	26	394	0	ENST00000263967.3:c.418C>T	p.Arg140Ter	p.R140*	ENST00000263967	NM_006218.2	140	Cga/Tga																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182679131	182679131	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	78	404	1	ENST00000292782.4:c.403G>T	p.Glu135Ter	p.E135*	ENST00000292782	NM_020640.2	135	Gaa/Taa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467818	66467818	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	61	334	0	ENST00000273854.3:c.451T>G	p.Phe151Val	p.F151V	ENST00000273854	NM_004439.5	151	Ttt/Gtt																																																																															
TET2	54790	MSKCC	GRCh37	4	106158448	106158448	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	63	210	0	ENST00000380013.4:c.3349A>C	p.Lys1117Gln	p.K1117Q	ENST00000380013	NM_001127208.2	1117	Aaa/Caa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521076	187521076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	118	463	0	ENST00000441802.2:c.12079G>A	p.Val4027Ile	p.V4027I	ENST00000441802	NM_005245.3	4027	Gtt/Att																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183285	56183285	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	100	510	0	ENST00000399503.3:c.4195G>T	p.Gly1399Ter	p.G1399*	ENST00000399503	NM_005921.1	1399	Gga/Tga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645182	86645182	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	50	260	0	ENST00000274376.6:c.1253+1G>A		p.X418_splice	ENST00000274376	NM_002890.2	418																																																																																
FLT4	2324	MSKCC	GRCh37	5	180043959	180043959	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	127	766	1	ENST00000261937.6:c.3037G>T	p.Asp1013Tyr	p.D1013Y	ENST00000261937	NM_182925.4	1013	Gat/Tat																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323289	31323289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	15	167	0	ENST00000412585.2:c.700C>T	p.Pro234Ser	p.P234S	ENST00000412585	NM_005514.6	234	Cct/Tct																																																																															
STK19	8859	MSKCC	GRCh37	6	31940496	31940496	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	190	789	0	ENST00000375331.2:c.529A>C	p.Ser177Arg	p.S177R	ENST00000375331	NM_004197.1	177	Agc/Cgc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956621	93956621	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	80	421	0	ENST00000369303.4:c.2615G>T	p.Cys872Phe	p.C872F	ENST00000369303	NM_004440.3	872	tGt/tTt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965620	93965620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	94	436	0	ENST00000369303.4:c.2308C>T	p.Leu770Phe	p.L770F	ENST00000369303	NM_004440.3	770	Ctc/Ttc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066560	94066560	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	91	399	0	ENST00000369303.4:c.1199T>C	p.Val400Ala	p.V400A	ENST00000369303	NM_004440.3	400	gTc/gCc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199724	138199724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	131	538	0	ENST00000237289.4:c.1142C>A	p.Ser381Tyr	p.S381Y	ENST00000237289	NM_001270507.1	381	tCt/tAt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459495	50459495	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	82	299	0	ENST00000331340.3:c.784C>A	p.Leu262Ile	p.L262I	ENST00000331340	NM_006060.4	262	Ctc/Atc																																																																															
HGF	3082	MSKCC	GRCh37	7	81334831	81334831	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	86	415	0	ENST00000222390.5:c.1885T>G	p.Leu629Val	p.L629V	ENST00000222390	NM_000601.4	629	Tta/Gta																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38273511	38273511	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	171	966	0	ENST00000425967.3:c.1824G>C	p.Arg608Ser	p.R608S	ENST00000425967	NM_001174067.1	608	agG/agC																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70971050	70971050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	115	626	1	ENST00000276594.2:c.1211G>T	p.Arg404Ile	p.R404I	ENST00000276594	NM_024504.3	404	aGa/aTa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5077573	5077573	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	56	374	0	ENST00000381652.3:c.1985A>C	p.His662Pro	p.H662P	ENST00000381652	NM_004972.3	662	cAt/cCt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5089753	5089753	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	57	277	0	ENST00000381652.3:c.2651T>G	p.Leu884Arg	p.L884R	ENST00000381652	NM_004972.3	884	cTt/cGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486206	8486206	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	60	407	0	ENST00000356435.5:c.2611C>A	p.Leu871Ile	p.L871I	ENST00000356435		871	Ctt/Att																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006024	22006024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	214	843	0	ENST00000276925.6:c.379G>A	p.Asp127Asn	p.D127N	ENST00000276925	NM_004936.3	127	Gac/Aac																																																																															
TEK	7010	MSKCC	GRCh37	9	27173286	27173286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	48	655	0	ENST00000380036.4:c.827C>T	p.Ser276Phe	p.S276F	ENST00000380036	NM_000459.3	276	tCt/tTt																																																																															
TEK	7010	MSKCC	GRCh37	9	27197349	27197349	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	123	520	0	ENST00000380036.4:c.1661A>C	p.Lys554Thr	p.K554T	ENST00000380036	NM_000459.3	554	aAa/aCa																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966709	36966709	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	74	480	0	ENST00000358127.4:c.617C>A	p.Ser206Tyr	p.S206Y	ENST00000358127	NM_001280556.1	206	tCt/tAt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781512	135781512	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	84	410	0	ENST00000298552.3:c.1453G>T	p.Glu485Ter	p.E485*	ENST00000298552	NM_001162426.1	485	Gaa/Taa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921564	39921564	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	166	354	0	ENST00000378444.4:c.4256T>C	p.Phe1419Ser	p.F1419S	ENST00000378444	NM_001123385.1	1419	tTc/tCc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410193	63410193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	133	385	0	ENST00000330258.3:c.2974G>A	p.Ala992Thr	p.A992T	ENST00000330258	NM_152424.3	992	Gca/Aca																																																																															
MED12	9968	MSKCC	GRCh37	X	70347202	70347202	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	125	298	0	ENST00000374080.3:c.2866A>G	p.Lys956Glu	p.K956E	ENST00000374080		956	Aag/Gag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	41	354	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0054688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	179	745	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3790512	3790512	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	107	587	0	ENST00000262367.5:c.4021C>T	p.Arg1341Ter	p.R1341*	ENST00000262367	NM_004380.2	1341	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857767	9857767	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	109	537	0	ENST00000330684.3:c.3634del	p.Thr1212ArgfsTer19	p.T1212Rfs*19	ENST00000330684	NM_001134407.1	1212	Acg/cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054212-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			342	31	418	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0054212-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			481	76	731	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969884	81969884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199840870		P-0054212-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			502	93	594	1	ENST00000359376.3:c.2953G>A	p.Val985Ile	p.V985I	ENST00000359376	NM_002661.3	985	Gtc/Atc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40911143	40911143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	37	346	1	ENST00000373198.4:c.2162G>A	p.Arg721His	p.R721H	ENST00000373198	NM_133170.3	721	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0054486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	161	859	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112175476	112175476	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	62	343	0	ENST00000257430.4:c.4188del	p.Phe1396LeufsTer19	p.F1396Lfs*19	ENST00000257430	NM_000038.5	1395	agT/ag																																																																															
PAK1	5058	MSKCC	GRCh37	11	77047151	77047151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	78	537	0	ENST00000356341.3:c.1393C>T	p.Leu465Phe	p.L465F	ENST00000356341	NM_002576.4	465	Ctc/Ttc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954019	32954019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	85	377	0	ENST00000380152.3:c.9086C>T	p.Ala3029Val	p.A3029V	ENST00000380152		3029	gCg/gTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114917819	114917819	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	96	505	0	ENST00000543371.1:c.1309G>T	p.Glu437Ter	p.E437*	ENST00000543371	NM_001198531.1	437	Gag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119043	70119043	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	173	769	0	ENST00000245479.2:c.616del	p.Ala206ArgfsTer13	p.A206Rfs*13	ENST00000245479	NM_000346.3	205	aaG/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0054834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	660	737	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600446	10600446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	569	911	1	ENST00000171111.5:c.1409G>A	p.Arg470His	p.R470H	ENST00000171111	NM_203500.1	470	cGt/cAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913185	32913185	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	152	547	0	ENST00000380152.3:c.4693A>G	p.Lys1565Glu	p.K1565E	ENST00000380152		1565	Aag/Gag																																																																															
CDH1	999	MSKCC	GRCh37	16	68772296	68772307	+	inframe_deletion	In_Frame_Del	DEL	GGCCGCGTCCTG	GGCCGCGTCCTG	-			P-0054834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1208	181	943	0	ENST00000261769.5:c.148_159del	p.Leu52_Val55del	p.L52_V55del	ENST00000261769	NM_004360.3	49	GGCCGCGTCCTG/-																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743931	40743931	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	143	565	0	ENST00000373198.4:c.3064G>C	p.Asp1022His	p.D1022H	ENST00000373198	NM_133170.3	1022	Gat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	903	684	2	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057520007		P-0054838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	313	1047	0	ENST00000269305.4:c.614A>T	p.Tyr205Phe	p.Y205F	ENST00000269305	NM_001126112.2	205	tAt/tTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8317936	8317936	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	154	471	0	ENST00000356435.5:c.5677T>A	p.Tyr1893Asn	p.Y1893N	ENST00000356435		1893	Tat/Aat																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692826	89692826	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	92	244	0	ENST00000371953.3:c.310T>G	p.Phe104Val	p.F104V	ENST00000371953	NM_000314.4	104	Ttt/Gtt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249387	110249387	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	467	1541	0	ENST00000374672.4:c.1186del	p.His396ThrfsTer48	p.H396Tfs*48	ENST00000374672	NM_004235.4	396	Cac/ac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092711	27092711	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0054838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	161	495	0	ENST00000324856.7:c.2733-1G>T		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																																
FGF3	2248	MSKCC	GRCh37	11	69625129	69625129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	319	1338	1	ENST00000334134.2:c.664C>T	p.Pro222Ser	p.P222S	ENST00000334134	NM_005247.2	222	Ccc/Tcc																																																																															
RB1	5925	MSKCC	GRCh37	13	48941722	48941722	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	97	325	1	ENST00000267163.4:c.1032G>T	p.Gln344His	p.Q344H	ENST00000267163	NM_000321.2	344	caG/caT																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646254	3646254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	351	1456	1	ENST00000294008.3:c.1824G>T	p.Glu608Asp	p.E608D	ENST00000294008	NM_032444.2	608	gaG/gaT																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968869	15968869	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	64	823	0	ENST00000268712.3:c.4881G>C	p.Leu1627Phe	p.L1627F	ENST00000268712	NM_006311.3	1627	ttG/ttC																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138382840	138382840	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	198	623	0	ENST00000289153.2:c.2704A>G	p.Thr902Ala	p.T902A	ENST00000289153	NM_006219.2	902	Aca/Gca																																																																															
KDR	3791	MSKCC	GRCh37	4	55968633	55968633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	285	813	0	ENST00000263923.4:c.2030C>A	p.Thr677Lys	p.T677K	ENST00000263923	NM_002253.2	677	aCg/aAg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518686	176518686	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0054838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	300	1046	0	ENST00000292408.4:c.604C>G	p.Leu202Val	p.L202V	ENST00000292408	NM_213647.1	202	Ctg/Gtg																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969953	161969953	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	287	1010	1	ENST00000366898.1:c.1016C>A	p.Ala339Glu	p.A339E	ENST00000366898	NM_004562.2	339	gCg/gAg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508725	106508725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	265	928	0	ENST00000359195.3:c.719C>T	p.Thr240Ile	p.T240I	ENST00000359195	NM_002649.2	240	aCc/aTc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44970649	44970649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	190	646	0	ENST00000377967.4:c.4199C>T	p.Ser1400Leu	p.S1400L	ENST00000377967	NM_021140.2	1400	tCa/tTa																																																																															
CDK8	1024	MSKCC	GRCh37	13	26959462	26959462	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	157	461	0	ENST00000381527.3:c.629A>G	p.His210Arg	p.H210R	ENST00000381527	NM_001260.1	210	cAt/cGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557891	187557891	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200242253		P-0054840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	283	625	0	ENST00000441802.2:c.3820G>A	p.Val1274Ile	p.V1274I	ENST00000441802	NM_005245.3	1274	Gtc/Atc																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20159754	20159754	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	288	608	0	ENST00000379607.5:c.5C>A	p.Pro2His	p.P2H	ENST00000379607	NM_001412.3	2	cCc/cAc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740546	58740546	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0054844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	141	704	0	ENST00000305921.3:c.1451T>A	p.Leu484Ter	p.L484*	ENST00000305921	NM_003620.3	484	tTa/tAa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115981	8115982	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0054844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	113	560	0	ENST00000346208.3:c.1328_1329dup	p.Ter444ValfsTer32	p.*444Vfs*32	ENST00000346208		443	ggt/gGTgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0054845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	26	1269	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0054856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	384	440	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781894		P-0054856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	532	562	0	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436149	56436149	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	1571	785	0	ENST00000407977.2:c.988C>T	p.Arg330Ter	p.R330*	ENST00000407977		330	Cga/Tga																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513202	149513202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	695	853	2	ENST00000261799.4:c.881C>T	p.Thr294Met	p.T294M	ENST00000261799	NM_002609.3	294	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	973	1050	0	ENST00000269305.4:c.395A>C	p.Lys132Thr	p.K132T	ENST00000269305	NM_001126112.2	132	aAg/aCg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390914	89390914	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	299	363	0	ENST00000336596.2:c.980C>G	p.Ser327Cys	p.S327C	ENST00000336596	NM_005233.5	327	tCt/tGt																																																																															
EZH1	2145	MSKCC	GRCh37	17	40857139	40857139	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	532	473	1	ENST00000428826.2:c.1902G>T	p.Gln634His	p.Q634H	ENST00000428826		634	caG/caT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180076529	180076529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	35	101	0	ENST00000261937.6:c.17C>T	p.Ala6Val	p.A6V	ENST00000261937	NM_182925.4	6	gCg/gTg																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156732	20156732	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	169	235	0	ENST00000379607.5:c.25G>C	p.Gly9Arg	p.G9R	ENST00000379607	NM_001412.3	9	Ggt/Cgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105831	27105831	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	245	427	0	ENST00000324856.7:c.5444del	p.Lys1815ArgfsTer68	p.K1815Rfs*68	ENST00000324856	NM_006015.4	1814	gtA/gt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65311260	65311260	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	184	360	0	ENST00000342505.4:c.2051A>T	p.Asp684Val	p.D684V	ENST00000342505	NM_002227.2	684	gAt/gTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143991	11143991	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	280	451	0	ENST00000344626.4:c.3572A>G	p.His1191Arg	p.H1191R	ENST00000344626	NM_003072.3	1191	cAc/cGc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	187	550	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0048483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	110	393	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945478	151945478	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	268	757	0	ENST00000262189.6:c.2041G>T	p.Glu681Ter	p.E681*	ENST00000262189	NM_170606.2	681	Gaa/Taa																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8075631	8075631	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	137	359	0	ENST00000377482.5:c.49A>T	p.Thr17Ser	p.T17S	ENST00000377482	NM_018948.3	17	Act/Tct																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98242374	98242374	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0048483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	83	277	0	ENST00000331920.6:c.946-2A>G		p.X316_splice	ENST00000331920	NM_000264.3	316																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	49	319	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223669	36223669	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	70	796	0	ENST00000222270.7:c.6219G>C	p.Glu2073Asp	p.E2073D	ENST00000222270	NM_014727.1	2073	gaG/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0049511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	63	445	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0049511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	21	195	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
BRAF	673	MSKCC	GRCh37	7	140449139	140449139	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	65	347	0	ENST00000288602.6:c.1940A>G	p.Tyr647Cys	p.Y647C	ENST00000288602	NM_004333.4	647	tAt/tGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0050641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	50	580	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
CALR	811	MSKCC	GRCh37	19	13049954	13049954	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	50	502	0	ENST00000316448.5:c.98G>A	p.Trp33Ter	p.W33*	ENST00000316448	NM_004343.3	33	tGg/tAg																																																																															
CIC	23152	MSKCC	GRCh37	19	42795024	42795024	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	33	1019	1	ENST00000575354.2:c.2104A>G	p.Asn702Asp	p.N702D	ENST00000575354	NM_015125.3	702	Aat/Gat																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62317181	62317181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	57	919	0	ENST00000508582.2:c.1376C>T	p.Ala459Val	p.A459V	ENST00000508582		459	gCt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0050702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	223	550	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870897	12870898	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0050702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	118	312	1	ENST00000228872.4:c.127dup	p.Arg43ProfsTer82	p.R43Pfs*82	ENST00000228872	NM_004064.3	42	acc/aCcc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998989	11999012	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TTTATGGTGCACTCTTCAGAGAGG	TTTATGGTGCACTCTTCAGAGAGG	-			P-0050702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	105	308	0	ENST00000353533.5:c.492_513+2del		p.X164_splice	ENST00000353533	NM_003010.3	164																																																																																
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0053674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	169	857	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390878	139390915	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTCTCCACTCAGGAAGCTCCGGCCCAGGTGGCCGCT	GGCTCTCCACTCAGGAAGCTCCGGCCCAGGTGGCCGCT	-			P-0053674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1180	69	1047	0	ENST00000277541.6:c.7276_7313del	p.Ser2426GlufsTer68	p.S2426Efs*68	ENST00000277541	NM_017617.3	2426	AGCGGCCACCTGGGCCGGAGCTTCCTGAGTGGAGAGCCg/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0053984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	610	419	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0053984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	275	654	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	28	401	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0054456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	99	694	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857275	9857275	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1426934537		P-0054456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	33	605	1	ENST00000330684.3:c.4126C>T	p.Arg1376Cys	p.R1376C	ENST00000330684	NM_001134407.1	1376	Cgc/Tgc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974703	21974728	+	frameshift_variant	Frame_Shift_Del	DEL	TCGGTGCGTTGGGCAGCGCCCCCGCC	TCGGTGCGTTGGGCAGCGCCCCCGCC	-			P-0054456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1473	219	430	0	ENST00000304494.5:c.99_124del	p.Ala34Ter	p.A34*	ENST00000304494	NM_000077.4	33	gaGGCGGGGGCGCTGCCCAACGCACCGAat/gaat																																																																															
TSC1	7248	MSKCC	GRCh37	9	135782159	135782160	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0054456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	41	460	0	ENST00000298552.3:c.1396_1397del	p.Leu466GlyfsTer3	p.L466Gfs*3	ENST00000298552	NM_001162426.1	466	CTg/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	39	341	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0054576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	123	775	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	14	300	4	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0054576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	66	296	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0054576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	47	364	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
PMS2	5395	MSKCC	GRCh37	7	6043355	6043355	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188006077		P-0054576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	23	170	3	ENST00000265849.7:c.319C>T	p.Arg107Trp	p.R107W	ENST00000265849	NM_000535.5	107	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0054576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	52	653	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27058045	27058045	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	91	540	3	ENST00000324856.7:c.1753C>T	p.Gln585Ter	p.Q585*	ENST00000324856	NM_006015.4	585	Cag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910504	32910504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	53	330	2	ENST00000380152.3:c.2012C>T	p.Ser671Phe	p.S671F	ENST00000380152		671	tCt/tTt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40498654	40498655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0054576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	90	495	0	ENST00000264657.5:c.204_205dup	p.Ser69IlefsTer70	p.S69Ifs*70	ENST00000264657	NM_139276.2	69	agc/aTAgc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222366	53222367	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCTCTGGCCCTGAGCTCCGTAC			P-0054576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	41	451	1	ENST00000375401.3:c.4444_4465dup	p.Ala1489GlyfsTer9	p.A1489Gfs*9	ENST00000375401	NM_004187.3	1489	gct/gGTACGGAGCTCAGGGCCAGAGGct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0054813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	254	356	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0054813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	257	563	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446458	49446458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	471	522	1	ENST00000301067.7:c.1147G>T	p.Asp383Tyr	p.D383Y	ENST00000301067	NM_003482.3	383	Gac/Tac																																																																															
STK11	6794	MSKCC	GRCh37	19	1220701	1220701	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	341	782	0	ENST00000326873.7:c.719C>G	p.Ser240Trp	p.S240W	ENST00000326873	NM_000455.4	240	tCg/tGg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	77	108	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	241	237	0	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	291	307	0	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097622	27097622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	167	139	0	ENST00000324856.7:c.3216del	p.Lys1072AsnfsTer21	p.K1072Nfs*21	ENST00000324856	NM_006015.4	1071	Aaa/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	216	227	0	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	183	120	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
CDC73	79577	MSKCC	GRCh37	1	193099338	193099338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	52	98	0	ENST00000367435.3:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000367435	NM_024529.4	91	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	103	109	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	313	276	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711960	89711960	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	84	121	0	ENST00000371953.3:c.578T>C	p.Leu193Pro	p.L193P	ENST00000371953	NM_000314.4	193	cTg/cCg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351056	89351057	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	21	238	0	ENST00000301030.4:c.1893dup	p.His632ThrfsTer2	p.H632Tfs*2	ENST00000301030	NM_001256183.1	631	-/A																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859665	57859665	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	93	156	0	ENST00000228682.2:c.719A>G	p.Asp240Gly	p.D240G	ENST00000228682	NM_005269.2	240	gAt/gGt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851848	134851848	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	214	186	0	ENST00000398015.3:c.1259del	p.Pro420HisfsTer28	p.P420Hfs*28	ENST00000398015	NM_004441.4	418	ttC/tt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933013	39933013	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	284	221	0	ENST00000378444.4:c.1586del	p.Asn529ThrfsTer60	p.N529Tfs*60	ENST00000378444	NM_001123385.1	529	aAc/ac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356423	66356423	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	46	73	0	ENST00000273854.3:c.1074del	p.Ser359LeufsTer63	p.S359Lfs*63	ENST00000273854	NM_004439.5	358	ccC/cc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440643	56440643	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	240	233	0	ENST00000407977.2:c.575del	p.Pro192ArgfsTer11	p.P192Rfs*11	ENST00000407977		192	cCg/cg																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15821896	15821896	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	43	93	0	ENST00000307771.7:c.294del	p.Lys98AsnfsTer10	p.K98Nfs*10	ENST00000307771	NM_005089.3	97	Aaa/aa																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366987	40366987	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	203	239	0	ENST00000397332.2:c.210del	p.Thr71ArgfsTer69	p.T71Rfs*69	ENST00000397332	NM_001033082.2	70	ccC/cc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63829504	63829504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	97	129	0	ENST00000279873.7:c.1147G>A	p.Gly383Ser	p.G383S	ENST00000279873	NM_032199.2	383	Ggt/Agt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459891	149459891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143025739		P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	138	251	1	ENST00000286301.3:c.316C>T	p.Arg106Trp	p.R106W	ENST00000286301	NM_005211.3	106	Cgg/Tgg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645168	86645168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	62	69	0	ENST00000274376.6:c.1240C>T	p.Arg414Trp	p.R414W	ENST00000274376	NM_002890.2	414	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420204	49420204	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	91	236	1	ENST00000301067.7:c.15545del	p.Gly5182AlafsTer61	p.G5182Afs*61	ENST00000301067	NM_003482.3	5182	gGc/gc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440750	56440750	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	174	159	0	ENST00000407977.2:c.468del	p.Leu157Ter	p.L157*	ENST00000407977		156	ggG/gg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133981	38133981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	144	161	0	ENST00000317025.8:c.3905del	p.Asn1302MetfsTer4	p.N1302Mfs*4	ENST00000317025	NM_023034.1	1302	aAt/at																																																																															
TERT	7015	MSKCC	GRCh37	5	1294345	1294345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	178	178	0	ENST00000310581.5:c.656C>T	p.Pro219Leu	p.P219L	ENST00000310581	NM_198253.2	219	cCg/cTg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599939	28599939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	199	246	0	ENST00000253063.3:c.821G>A	p.Arg274Gln	p.R274Q	ENST00000253063	NM_031459.4	274	cGg/cAg																																																																															
B2M	567	MSKCC	GRCh37	15	45007896	45007897	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	92	97	0	ENST00000558401.1:c.346+1dup		p.W115fs	ENST00000558401	NM_004048.2	115	tgg/tGgg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222382	2222382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	236	196	0	ENST00000398665.3:c.3214C>T	p.Arg1072Cys	p.R1072C	ENST00000398665	NM_032482.2	1072	Cgt/Tgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653852	89653854	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	39	84	0	ENST00000371953.3:c.155_157del	p.Asp52del	p.D52del	ENST00000371953	NM_000314.4	50	atTGAt/att																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518658	103518658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	85	111	0	ENST00000355739.4:c.2246C>T	p.Ser749Leu	p.S749L	ENST00000355739	NM_000123.3	749	tCa/tTa																																																																															
AXL	558	MSKCC	GRCh37	19	41726618	41726618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	250	244	0	ENST00000301178.4:c.163C>T	p.Arg55Trp	p.R55W	ENST00000301178	NM_021913.4	55	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416449	49416449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	80	213	0	ENST00000301067.7:c.16262C>T	p.Thr5421Ile	p.T5421I	ENST00000301067	NM_003482.3	5421	aCa/aTa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004246	150004246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	54	84	0	ENST00000253339.5:c.1979G>A	p.Arg660His	p.R660H	ENST00000253339		660	cGt/cAt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188944	11188944	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	170	184	0	ENST00000361445.4:c.5779del	p.Val1927Ter	p.V1927*	ENST00000361445	NM_004958.3	1927	Gtg/tg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933497	36933497	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	228	253	0	ENST00000361632.4:c.1790A>G	p.His597Arg	p.H597R	ENST00000361632		597	cAc/cGc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46733283	46733283	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	116	140	0	ENST00000371975.4:c.1042+2T>C		p.X348_splice	ENST00000371975	NM_003579.3	348																																																																																
RAD54L	8438	MSKCC	GRCh37	1	46738346	46738346	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	179	135	0	ENST00000371975.4:c.1247T>G	p.Leu416Arg	p.L416R	ENST00000371975	NM_003579.3	416	cTg/cGg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115268856	115268856	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	140	150	0	ENST00000438362.2:c.1754A>G	p.Asp585Gly	p.D585G	ENST00000438362	NM_001242891.1	585	gAt/gGt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477076	67477076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	164	170	0	ENST00000327367.4:c.883C>T	p.Arg295Trp	p.R295W	ENST00000327367	NM_005902.3	295	Cgg/Tgg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343584	343584	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	252	243	0	ENST00000262320.3:c.2090C>A	p.Pro697His	p.P697H	ENST00000262320	NM_003502.3	697	cCc/cAc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81888105	81888105	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	164	150	0	ENST00000359376.3:c.250C>T	p.Arg84Ter	p.R84*	ENST00000359376	NM_002661.3	84	Cga/Tga																																																																															
XPO1	7514	MSKCC	GRCh37	2	61715370	61715370	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	34	140	0	ENST00000401558.2:c.2243T>C	p.Met748Thr	p.M748T	ENST00000401558	NM_003400.3	748	aTg/aCg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046262	128046262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	161	154	0	ENST00000285398.2:c.1001G>A	p.Arg334His	p.R334H	ENST00000285398	NM_000122.1	334	cGt/cAt																																																																															
EP300	2033	MSKCC	GRCh37	22	41572527	41572528	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	88	225	0	ENST00000263253.7:c.5058_5059del	p.Cys1686Ter	p.C1686*	ENST00000263253	NM_001429.3	1686	TGt/t																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502617	149502617	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	148	163	0	ENST00000261799.4:c.2171T>C	p.Leu724Pro	p.L724P	ENST00000261799	NM_002609.3	724	cTc/cCc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679941	30679941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	174	207	0	ENST00000376406.3:c.1778C>T	p.Ala593Val	p.A593V	ENST00000376406	NM_014641.2	593	gCa/gTa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982048	93982048	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	122	112	0	ENST00000369303.4:c.1417A>G	p.Ile473Val	p.I473V	ENST00000369303	NM_004440.3	473	Atc/Gtc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117868917	117868917	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs201565607		P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	108	81	0	ENST00000297338.2:c.782A>G	p.His261Arg	p.H261R	ENST00000297338	NM_006265.2	261	cAt/cGt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401237	139401237	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	376	325	0	ENST00000277541.6:c.3832G>T	p.Ala1278Ser	p.A1278S	ENST00000277541	NM_017617.3	1278	Gcc/Tcc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934234	39934235	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0054821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	23	401	0	ENST00000378444.4:c.364dup	p.Met122AsnfsTer64	p.M122Nfs*64	ENST00000378444	NM_001123385.1	122	atg/aAtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0054720-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			322	146	472	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0054720-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			355	154	566	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492689	56492689	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0054720-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			303	162	479	0	ENST00000407977.2:c.250C>T	p.Gln84Ter	p.Q84*	ENST00000407977		84	Cag/Tag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435814	56435815	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0054720-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			420	160	912	0	ENST00000407977.2:c.1322dup	p.Asp442Ter	p.D442*	ENST00000407977		441	cct/ccCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	20	534	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0054768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	242	535	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0054768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	496	1126	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911534	101911534	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111426349		P-0054768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	9	431	0	ENST00000374994.4:c.1459C>T	p.Arg487Trp	p.R487W	ENST00000374994	NM_004612.2	487	Cgg/Tgg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133685	41133685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	177	537	0	ENST00000379561.5:c.1943C>T	p.Thr648Met	p.T648M	ENST00000379561	NM_002015.3	648	aCg/aTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710652	114710652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	39	536	0	ENST00000543371.1:c.137C>T	p.Ser46Leu	p.S46L	ENST00000543371	NM_001198531.1	46	tCg/tTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5218538	5218538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	57	977	0	ENST00000357368.4:c.3941G>T	p.Arg1314Leu	p.R1314L	ENST00000357368	NM_002850.3	1314	cGc/cTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132573	11132573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	68	1144	1	ENST00000344626.4:c.2789C>T	p.Pro930Leu	p.P930L	ENST00000344626	NM_003072.3	930	cCc/cTc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164877	36164878	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	81	1056	0	ENST00000300305.3:c.997_998insT	p.Pro333LeufsTer267	p.P333Lfs*267	ENST00000300305		333	ccg/cTcg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098957	47098957	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	36	604	0	ENST00000409792.3:c.6317del	p.Lys2106ArgfsTer41	p.K2106Rfs*41	ENST00000409792	NM_014159.6	2106	aAg/ag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162273	47162273	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0054772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	50	503	0	ENST00000409792.3:c.3853A>T	p.Lys1285Ter	p.K1285*	ENST00000409792	NM_014159.6	1285	Aag/Tag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169992	32169992	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	76	1263	0	ENST00000375023.3:c.3616G>T	p.Gly1206Ter	p.G1206*	ENST00000375023	NM_004557.3	1206	Gga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0054772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	19	415	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117861238	117861238	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	21	468	0	ENST00000297338.2:c.1651C>G	p.Gln551Glu	p.Q551E	ENST00000297338	NM_006265.2	551	Cag/Gag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231343	98231343	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	50	903	1	ENST00000331920.6:c.1940G>T	p.Ser647Ile	p.S647I	ENST00000331920	NM_000264.3	647	aGc/aTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045724	47045724	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	86	1444	0	ENST00000329236.7:c.2371A>G	p.Met791Val	p.M791V	ENST00000329236	NM_001204466.1	791	Atg/Gtg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914644	32914644	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	80	642	0	ENST00000380152.3:c.6152A>G	p.Asn2051Ser	p.N2051S	ENST00000380152		2051	aAt/aGt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639255	3639255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	207	996	2	ENST00000294008.3:c.4384G>A	p.Ala1462Thr	p.A1462T	ENST00000294008	NM_032444.2	1462	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577495	7577501	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGACCTG	TGACCTG	-			P-0054681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	293	738	0	ENST00000269305.4:c.780_782+4del		p.X260_splice	ENST00000269305	NM_001126112.2	260																																																																																
APC	324	MSKCC	GRCh37	5	112170770	112170770	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	121	693	0	ENST00000257430.4:c.1866C>A	p.Tyr622Ter	p.Y622*	ENST00000257430	NM_000038.5	622	taC/taA																																																																															
APC	324	MSKCC	GRCh37	5	112175291	112175292	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0054681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	131	272	0	ENST00000257430.4:c.4000_4001del	p.Ser1334GlnfsTer7	p.S1334Qfs*7	ENST00000257430	NM_000038.5	1334	TCc/c																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742931	17742931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	125	526	0	ENST00000250003.3:c.839C>T	p.Pro280Leu	p.P280L	ENST00000250003	NM_002478.4	280	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	373	825	1	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873464	136873464	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	85	346	0	ENST00000241393.3:c.34T>C	p.Tyr12His	p.Y12H	ENST00000241393	NM_003467.2	12	Tac/Cac																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027093	71027093	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200629338		P-0054723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	44	496	1	ENST00000318789.4:c.1234G>A	p.Ala412Thr	p.A412T	ENST00000318789	NM_032682.5	412	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112175353	112175358	+	stop_gained	Nonsense_Mutation	ONP	TTCTTC	TTCTTC	ATCTTA			P-0054723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	90	207	0	ENST00000257430.4:c.4062_4067delinsATCTTA	p.Phe1354_Ser1356delinsLeuSerTer	p.F1354_S1356delinsLS*	ENST00000257430	NM_000038.5	1354	ttTTCTTCa/ttATCTTAa																																																																															
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	21	249	0	ENST00000257430.4:c.3944C>A	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577042	7577043	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0054726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	66	896	0	ENST00000269305.4:c.895_896del	p.Leu299AlafsTer6	p.L299Afs*6	ENST00000269305	NM_001126112.2	299	CTg/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0054727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	369	449	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0054727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	166	752	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285250	212285250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	77	547	0	ENST00000342788.4:c.3051G>T	p.Met1017Ile	p.M1017I	ENST00000342788	NM_005235.2	1017	atG/atT																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182662914	182662914	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	61	621	0	ENST00000292782.4:c.748C>G	p.Gln250Glu	p.Q250E	ENST00000292782	NM_020640.2	250	Caa/Gaa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355084	73355084	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	56	521	0	ENST00000377767.4:c.286C>T	p.Gln96Ter	p.Q96*	ENST00000377767	NM_014953.3	96	Caa/Taa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552613	18552613	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	111	435	1	ENST00000266497.5:c.2024G>T	p.Arg675Ile	p.R675I	ENST00000266497		675	aGa/aTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27059180	27059192	+	frameshift_variant	Frame_Shift_Del	DEL	ATTCATTTGGGTC	ATTCATTTGGGTC	-			P-0054727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	52	455	0	ENST00000324856.7:c.1817_1829del	p.Asp606ValfsTer9	p.D606Vfs*9	ENST00000324856	NM_006015.4	606	gATTCATTTGGGTCt/gt																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67197035	67197035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	71	469	1	ENST00000312629.5:c.278G>T	p.Gly93Val	p.G93V	ENST00000312629	NM_003952.2	93	gGc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433968	49433968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	118	1055	0	ENST00000301067.7:c.7585G>T	p.Gly2529Cys	p.G2529C	ENST00000301067	NM_003482.3	2529	Ggc/Tgc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12647776	12647776	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	30	390	0	ENST00000251849.4:c.604G>T	p.Gly202Cys	p.G202C	ENST00000251849	NM_002880.3	202	Ggt/Tgt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129951	55129951	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	75	710	0	ENST00000257290.5:c.485A>T	p.His162Leu	p.H162L	ENST00000257290	NM_006206.4	162	cAc/cTc																																																																															
TET2	54790	MSKCC	GRCh37	4	106155544	106155544	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	36	415	0	ENST00000380013.4:c.445G>C	p.Glu149Gln	p.E149Q	ENST00000380013	NM_001127208.2	149	Gaa/Caa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671877	30671877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	190	996	2	ENST00000376406.3:c.5083C>T	p.Pro1695Ser	p.P1695S	ENST00000376406	NM_014641.2	1695	Cct/Tct																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0054730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	255	823	1	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47035973	47035973	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	90	856	1	ENST00000329236.7:c.420G>A	p.Trp140Ter	p.W140*	ENST00000329236	NM_001204466.1	140	tgG/tgA																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643353	38643353	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	39	449	0	ENST00000299084.4:c.823G>C	p.Asp275His	p.D275H	ENST00000299084	NM_152594.2	275	Gat/Cat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164303	47164328	+	frameshift_variant	Frame_Shift_Del	DEL	TCAGGATTTTTATTAATCATTCTTAA	TCAGGATTTTTATTAATCATTCTTAA	-			P-0054730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	24	322	0	ENST00000409792.3:c.1798_1823del	p.Leu600LysfsTer15	p.L600Kfs*15	ENST00000409792	NM_014159.6	600	TTAAGAATGATTAATAAAAATCCTGAa/a																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0054735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	63	328	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0054735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	61	450	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	130	603	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120491657	120491657	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	161	259	0	ENST00000256646.2:c.2572A>G	p.Thr858Ala	p.T858A	ENST00000256646	NM_024408.3	858	Act/Gct																																																																															
RB1	5925	MSKCC	GRCh37	13	48939078	48939078	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	54	268	0	ENST00000267163.4:c.910G>T	p.Gly304Ter	p.G304*	ENST00000267163	NM_000321.2	304	Gga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577543	7577543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	331	589	0	ENST00000269305.4:c.738G>T	p.Met246Ile	p.M246I	ENST00000269305	NM_001126112.2	246	atG/atT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120525	94120525	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	60	316	0	ENST00000369303.4:c.526C>A	p.Pro176Thr	p.P176T	ENST00000369303	NM_004440.3	176	Cct/Act																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047254	180047254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	183	798	0	ENST00000261937.6:c.2461G>A	p.Glu821Lys	p.E821K	ENST00000261937	NM_182925.4	821	Gag/Aag																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149514352	149514352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	102	437	0	ENST00000261799.4:c.592G>A	p.Glu198Lys	p.E198K	ENST00000261799	NM_002609.3	198	Gag/Aag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162743285	162743285	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	132	224	0	ENST00000367921.3:c.1755G>C	p.Met585Ile	p.M585I	ENST00000367921	NM_006182.2	585	atG/atC																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347459	89347459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	151	633	0	ENST00000301030.4:c.5491G>A	p.Asp1831Asn	p.D1831N	ENST00000301030	NM_001256183.1	1831	Gac/Aac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16024417	16024417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	124	339	0	ENST00000268712.3:c.1801G>T	p.Ala601Ser	p.A601S	ENST00000268712	NM_006311.3	601	Gca/Tca																																																																															
NF1	4763	MSKCC	GRCh37	17	29653066	29653066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	73	340	0	ENST00000358273.4:c.5064G>T	p.Glu1688Asp	p.E1688D	ENST00000358273	NM_001042492.2	1688	gaG/gaT																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238957	5238957	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	236	357	0	ENST00000357368.4:c.1822G>T	p.Val608Leu	p.V608L	ENST00000357368	NM_002850.3	608	Gtg/Ttg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953982	17953982	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0054735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	330	646	0	ENST00000458235.1:c.421-1G>A		p.X141_splice	ENST00000458235	NM_000215.3	141																																																																																
AXL	558	MSKCC	GRCh37	19	41743903	41743903	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	404	796	1	ENST00000301178.4:c.838G>T	p.Glu280Ter	p.E280*	ENST00000301178	NM_021913.4	280	Gag/Tag																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872535	136872541	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCACA	GCTCACA	-			P-0054735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	163	251	0	ENST00000241393.3:c.957_963del	p.Val320GlufsTer44	p.V320Efs*44	ENST00000241393	NM_003467.2	319	tcTGTGAGC/tc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967304	134967304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	118	558	0	ENST00000398015.3:c.2643G>T	p.Met881Ile	p.M881I	ENST00000398015	NM_004441.4	881	atG/atT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630405	187630405	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	123	571	0	ENST00000441802.2:c.577G>C	p.Asp193His	p.D193H	ENST00000441802	NM_005245.3	193	Gat/Cat																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149501461	149501461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	192	725	0	ENST00000261799.4:c.2326G>T	p.Asp776Tyr	p.D776Y	ENST00000261799	NM_002609.3	776	Gat/Tat																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681117	30681118	+	missense_variant	Missense_Mutation	DNP	TG	TG	AA			P-0054735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	126	327	0	ENST00000376406.3:c.601_602delinsTT	p.His201Phe	p.H201F	ENST00000376406	NM_014641.2	201	CAt/TTt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526585	106526585	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	53	292	0	ENST00000359195.3:c.2878C>A	p.Leu960Ile	p.L960I	ENST00000359195	NM_002649.2	960	Cta/Ata																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636839	8636839	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	98	332	0	ENST00000356435.5:c.70C>A	p.Pro24Thr	p.P24T	ENST00000356435		24	Cca/Aca																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44928915	44928915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	197	472	0	ENST00000377967.4:c.2015C>T	p.Ala672Val	p.A672V	ENST00000377967	NM_021140.2	672	gCt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7572984	7572984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs730882017		P-0054777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	321	660	0	ENST00000269305.4:c.1125del	p.Gln375HisfsTer47	p.Q375Hfs*47	ENST00000269305	NM_001126112.2	375	caG/ca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877880	151877880	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	216	474	0	ENST00000262189.6:c.7065del	p.Pro2356LeufsTer9	p.P2356Lfs*9	ENST00000262189	NM_170606.2	2355	ctT/ct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	121	501	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0054782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	389	1025	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0054782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	113	511	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0054782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	79	383	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243866	46243866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	65	400	0	ENST00000334344.6:c.1960C>T	p.Pro654Ser	p.P654S	ENST00000334344	NM_152641.2	654	Cct/Tct																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523501	106523501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	30	280	0	ENST00000359195.3:c.2653G>A	p.Ala885Thr	p.A885T	ENST00000359195	NM_002649.2	885	Gcc/Acc																																																																															
NF1	4763	MSKCC	GRCh37	17	29667607	29667607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	63	762	1	ENST00000358273.4:c.7006G>A	p.Ala2336Thr	p.A2336T	ENST00000358273	NM_001042492.2	2336	Gca/Aca																																																																															
MTOR	2475	MSKCC	GRCh37	1	11186835	11186835	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	40	560	0	ENST00000361445.4:c.6370C>T	p.Gln2124Ter	p.Q2124*	ENST00000361445	NM_004958.3	2124	Caa/Taa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73343028	73343028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	45	267	0	ENST00000377767.4:c.1778C>T	p.Ala593Val	p.A593V	ENST00000377767	NM_014953.3	593	gCt/gTt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212537956	212537956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	172	594	1	ENST00000342788.4:c.1649C>T	p.Ser550Phe	p.S550F	ENST00000342788	NM_005235.2	550	tCc/tTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944604	40944604	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	137	470	0	ENST00000373198.4:c.1898T>C	p.Leu633Pro	p.L633P	ENST00000373198	NM_133170.3	633	cTt/cCt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907091	101907091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	229	416	0	ENST00000374994.4:c.1051G>C	p.Asp351His	p.D351H	ENST00000374994	NM_004612.2	351	Gac/Cac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923059	39923059	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	375	978	2	ENST00000378444.4:c.3649del	p.Arg1217AspfsTer21	p.R1217Dfs*21	ENST00000378444	NM_001123385.1	1217	Cga/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	26	454	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0054783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	161	1045	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	23	424	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344285	118344285	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	37	467	0	ENST00000534358.1:c.2411C>G	p.Thr804Ser	p.T804S	ENST00000534358	NM_005933.3	804	aCt/aGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	271	484	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221318	1221319	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0054784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	1233	1261	1	ENST00000326873.7:c.841_842delinsT	p.Pro281CysfsTer6	p.P281Cfs*6	ENST00000326873	NM_000455.4	281	CCg/Tg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066583	94066583	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	444	625	0	ENST00000369303.4:c.1176G>T	p.Gln392His	p.Q392H	ENST00000369303	NM_004440.3	392	caG/caT																																																																															
MTOR	2475	MSKCC	GRCh37	1	11297977	11297977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1175	395	944	0	ENST00000361445.4:c.2131G>A	p.Ala711Thr	p.A711T	ENST00000361445	NM_004958.3	711	Gcc/Acc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949347	71949347	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	940	1242	0	ENST00000298229.2:c.3727G>C	p.Asp1243His	p.D1243H	ENST00000298229	NM_001567.3	1243	Gac/Cac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118758	115118758	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	622	776	0	ENST00000257566.3:c.583G>T	p.Glu195Ter	p.E195*	ENST00000257566	NM_016569.3	195	Gaa/Taa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95596476	95596476	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	159	400	0	ENST00000343455.3:c.492A>T	p.Leu164Phe	p.L164F	ENST00000343455	NM_177438.2	164	ttA/ttT																																																																															
DICER1	23405	MSKCC	GRCh37	14	95597923	95597923	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	217	502	0	ENST00000343455.3:c.361G>T	p.Val121Phe	p.V121F	ENST00000343455	NM_177438.2	121	Gtt/Ttt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274012	10274012	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2279	631	1468	0	ENST00000330684.3:c.257T>C	p.Val86Ala	p.V86A	ENST00000330684	NM_001134407.1	86	gTg/gCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	708	828	0	ENST00000269305.4:c.706del	p.Tyr236ThrfsTer11	p.Y236Tfs*11	ENST00000269305	NM_001126112.2	236	Tac/ac																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957426	1957426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	201	813	0	ENST00000382891.5:c.2525G>A	p.Ser842Asn	p.S842N	ENST00000382891	NM_133335.3	842	aGc/aAc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120437	94120437	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	90	449	0	ENST00000369303.4:c.614G>T	p.Cys205Phe	p.C205F	ENST00000369303	NM_004440.3	205	tGc/tTc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135777992	135777992	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0054784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	963	666	0	ENST00000298552.3:c.2391G>C	p.Gln797His	p.Q797H	ENST00000298552	NM_001162426.1	797	caG/caC																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396309	139396309	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2029	254	1496	0	ENST00000277541.6:c.5529G>A	p.Trp1843Ter	p.W1843*	ENST00000277541	NM_017617.3	1843	tgG/tgA																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949116	71949116	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	66	1202	0	ENST00000298229.2:c.3585del	p.Leu1196TrpfsTer6	p.L1196Wfs*6	ENST00000298229	NM_001567.3	1195	Ggg/gg																																																																															
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	16	213	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577567	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	71	626	0	ENST00000269305.4:c.714dup	p.Asn239Ter	p.N239*	ENST00000269305	NM_001126112.2	238	-/T																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	131	457	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0054696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	311	993	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591902	48591902	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	162	510	0	ENST00000342988.3:c.1065C>G	p.Asp355Glu	p.D355E	ENST00000342988	NM_005359.5	355	gaC/gaG																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11106880	11106923	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTTTGTAGGCTGAAGATGAGGAGGGGTACCGCAAGCTCATCGA	CTTTTGTAGGCTGAAGATGAGGAGGGGTACCGCAAGCTCATCGA	-			P-0054696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	37	692	0	ENST00000344626.4:c.1594-8_1629del		p.X532_splice	ENST00000344626	NM_003072.3	532																																																																																
NF2	4771	MSKCC	GRCh37	22	30032847	30032847	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	112	365	0	ENST00000338641.4:c.222G>A	p.Trp74Ter	p.W74*	ENST00000338641	NM_000268.3	74	tgG/tgA																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572005	64572005	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	187	979	0	ENST00000337652.1:c.1649del	p.Pro550ArgfsTer14	p.P550Rfs*14	ENST00000337652	NM_130803.2	550	cCg/cg																																																																															
VHL	7428	MSKCC	GRCh37	3	10183724	10183724	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	134	1041	0	ENST00000256474.2:c.193T>G	p.Ser65Ala	p.S65A	ENST00000256474	NM_000551.3	65	Tcg/Gcg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47088021	47088021	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	46	632	0	ENST00000409792.3:c.7054del	p.Val2352Ter	p.V2352*	ENST00000409792	NM_014159.6	2352	Gtg/tg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0054705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	18	592	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	502	876	0	ENST00000269305.4:c.537T>A	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caA																																																																															
APC	324	MSKCC	GRCh37	5	112175223	112175223	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	47	218	0	ENST00000257430.4:c.3933del	p.Ile1311MetfsTer10	p.I1311Mfs*10	ENST00000257430	NM_000038.5	1311	aTt/at																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118369086	118369086	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0054705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	77	322	1	ENST00000534358.1:c.5804G>A	p.Arg1935Lys	p.R1935K	ENST00000534358	NM_005933.3	1935	aGa/aAa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366937	15366937	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1412	155	791	0	ENST00000263377.2:c.1689C>G	p.Ser563Arg	p.S563R	ENST00000263377	NM_058243.2	563	agC/agG																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390186	89390186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	74	406	0	ENST00000336596.2:c.935G>A	p.Arg312Gln	p.R312Q	ENST00000336596	NM_005233.5	312	cGg/cAg																																																																															
AR	367	MSKCC	GRCh37	X	66765482	66765482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	177	990	0	ENST00000374690.3:c.494C>T	p.Ser165Phe	p.S165F	ENST00000374690	NM_000044.3	165	tCc/tTc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87563404	87563404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008498-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			487	56	568	0	ENST00000277120.3:c.1792C>T	p.Arg598Cys	p.R598C	ENST00000277120		598	Cgc/Tgc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061137	38061186	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGC	GCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGC	-			P-0008498-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			138	35	215	0	ENST00000250448.2:c.803_852del	p.Cys268Ter	p.C268*	ENST00000250448	NM_004496.3	268	tGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGC/t																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	123	465	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	397000	397000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	125	959	0	ENST00000262320.3:c.26C>T	p.Pro9Leu	p.P9L	ENST00000262320	NM_003502.3	9	cCc/cTc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465606	99465606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	39	638	1	ENST00000268035.6:c.2431G>A	p.Glu811Lys	p.E811K	ENST00000268035	NM_000875.3	811	Gag/Aag																																																																															
MITF	4286	MSKCC	GRCh37	3	69928295	69928295	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	79	575	0	ENST00000352241.4:c.115G>T	p.Glu39Ter	p.E39*	ENST00000352241	NM_198159.2	39	Gag/Tag																																																																															
JAK2	3717	MSKCC	GRCh37	9	5050701	5050701	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	26	399	0	ENST00000381652.3:c.484G>T	p.Val162Leu	p.V162L	ENST00000381652	NM_004972.3	162	Gtg/Ttg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610576	10610576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	66	1050	0	ENST00000171111.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000171111	NM_203500.1	45	tCc/tTc																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108225	8108225	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	101	889	1	ENST00000585124.1:c.999G>T	p.Arg333Ser	p.R333S	ENST00000585124	NM_004217.3	333	agG/agT																																																																															
JUN	3725	MSKCC	GRCh37	1	59248580	59248580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	103	1001	0	ENST00000371222.2:c.163G>T	p.Ala55Ser	p.A55S	ENST00000371222	NM_002228.3	55	Gcc/Tcc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982073	201982073	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	124	868	0	ENST00000359651.3:c.599-2A>G		p.X200_splice	ENST00000359651		200																																																																																
TET1	80312	MSKCC	GRCh37	10	70334005	70334005	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	33	267	0	ENST00000373644.4:c.1910T>C	p.Leu637Pro	p.L637P	ENST00000373644	NM_030625.2	637	cTg/cCg																																																																															
TET1	80312	MSKCC	GRCh37	10	70405377	70405377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	58	638	0	ENST00000373644.4:c.2891C>T	p.Ser964Leu	p.S964L	ENST00000373644	NM_030625.2	964	tCa/tTa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573753	64573753	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	113	957	1	ENST00000337652.1:c.1015G>T	p.Val339Leu	p.V339L	ENST00000337652	NM_130803.2	339	Gtg/Ttg																																																																															
PGR	5241	MSKCC	GRCh37	11	100920770	100920770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	71	435	0	ENST00000325455.5:c.2378C>T	p.Ser793Leu	p.S793L	ENST00000325455	NM_001202474.3	793	tCa/tTa																																																																															
ATM	472	MSKCC	GRCh37	11	108178683	108178683	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	37	269	0	ENST00000278616.4:c.5734G>C	p.Val1912Leu	p.V1912L	ENST00000278616	NM_000051.3	1912	Gtt/Ctt																																																																															
ATM	472	MSKCC	GRCh37	11	108192067	108192067	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	90	617	1	ENST00000278616.4:c.6492G>T	p.Glu2164Asp	p.E2164D	ENST00000278616	NM_000051.3	2164	gaG/gaT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425910	49425910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	91	1077	2	ENST00000301067.7:c.12578C>T	p.Thr4193Met	p.T4193M	ENST00000301067	NM_003482.3	4193	aCg/aTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112331	115112331	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	18	186	0	ENST00000257566.3:c.1409C>G	p.Ala470Gly	p.A470G	ENST00000257566	NM_016569.3	470	gCg/gGg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434120	121434120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	112	946	0	ENST00000257555.6:c.1011C>A	p.Ser337Arg	p.S337R	ENST00000257555		337	agC/agA																																																																															
FLT3	2322	MSKCC	GRCh37	13	28623545	28623545	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	26	395	0	ENST00000241453.7:c.1012C>T	p.Gln338Ter	p.Q338*	ENST00000241453	NM_004119.2	338	Caa/Taa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28623849	28623849	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	88	676	0	ENST00000241453.7:c.805T>C	p.Trp269Arg	p.W269R	ENST00000241453	NM_004119.2	269	Tgg/Cgg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28913308	28913308	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	82	521	0	ENST00000282397.4:c.2485C>G	p.Leu829Val	p.L829V	ENST00000282397	NM_002019.4	829	Ctg/Gtg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32930728	32930729	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	65	543	0	ENST00000380152.3:c.7599_7600delinsCT	p.Ala2534Ser	p.A2534S	ENST00000380152		2533	tcTGcg/tcCTcg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515225	103515225	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	55	452	0	ENST00000355739.4:c.1726G>T	p.Glu576Ter	p.E576*	ENST00000355739	NM_000123.3	576	Gaa/Taa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712638	43712638	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	113	895	0	ENST00000382044.4:c.4546G>T	p.Gly1516Ter	p.G1516*	ENST00000382044	NM_001141980.1	1516	Gga/Tga																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43720216	43720216	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	36	471	0	ENST00000382044.4:c.3826G>A	p.Glu1276Lys	p.E1276K	ENST00000382044	NM_001141980.1	1276	Gag/Aag																																																																															
BCL2	596	MSKCC	GRCh37	18	60985372	60985372	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	53	872	0	ENST00000333681.4:c.528G>A	p.Trp176Ter	p.W176*	ENST00000333681		176	tgG/tgA																																																																															
EP300	2033	MSKCC	GRCh37	22	41556686	41556686	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	68	565	0	ENST00000263253.7:c.3631G>T	p.Glu1211Ter	p.E1211*	ENST00000263253	NM_001429.3	1211	Gag/Tag																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170002344	170002344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	23	229	0	ENST00000295797.4:c.1163C>T	p.Ser388Phe	p.S388F	ENST00000295797	NM_002740.5	388	tCt/tTt																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747946	41747946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	34	305	0	ENST00000226382.2:c.823C>A	p.Pro275Thr	p.P275T	ENST00000226382	NM_003924.3	275	Ccc/Acc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217233	66217233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	76	494	1	ENST00000273854.3:c.2382G>A	p.Met794Ile	p.M794I	ENST00000273854	NM_004439.5	794	atG/atA																																																																															
TET2	54790	MSKCC	GRCh37	4	106155649	106155649	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	25	428	0	ENST00000380013.4:c.550G>C	p.Glu184Gln	p.E184Q	ENST00000380013	NM_001127208.2	184	Gag/Cag																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149456863	149456864	+	missense_variant	Missense_Mutation	DNP	TG	TG	GT			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	79	800	0	ENST00000286301.3:c.864_865delinsAC	p.Thr289Pro	p.T289P	ENST00000286301	NM_005211.3	288	tcCAcc/tcACcc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043468	180043468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	34	843	2	ENST00000261937.6:c.3118G>T	p.Ala1040Ser	p.A1040S	ENST00000261937	NM_182925.4	1040	Gct/Tct																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157469971	157469971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	45	749	0	ENST00000346085.5:c.2765G>A	p.Gly922Asp	p.G922D	ENST00000346085	NM_020732.3	922	gGc/gAc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162394339	162394339	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	56	366	0	ENST00000366898.1:c.729C>G	p.Asp243Glu	p.D243E	ENST00000366898	NM_004562.2	243	gaC/gaG																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485833	8485833	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	49	468	0	ENST00000356435.5:c.2984G>T	p.Arg995Leu	p.R995L	ENST00000356435		995	cGt/cTt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250493	110250493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	70	789	0	ENST00000374672.4:c.182G>T	p.Arg61Leu	p.R61L	ENST00000374672	NM_004235.4	61	cGc/cTc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922239	39922239	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	59	544	0	ENST00000378444.4:c.3933C>G	p.Cys1311Trp	p.C1311W	ENST00000378444	NM_001123385.1	1311	tgC/tgG																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006788	47006788	+	5_prime_UTR_variant	5'UTR	SNP	G	G	T			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	94	809	0	ENST00000329236.7:c.-93G>T		p.*31*	ENST00000329236	NM_001204466.1																																																																																	
AMER1	139285	MSKCC	GRCh37	X	63410289	63410289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	122	979	0	ENST00000330258.3:c.2878G>A	p.Ala960Thr	p.A960T	ENST00000330258	NM_152424.3	960	Gct/Act																																																																															
ATRX	546	MSKCC	GRCh37	X	76875939	76875940	+	missense_variant	Missense_Mutation	DNP	AG	AG	TA			P-0054418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	55	490	2	ENST00000373344.5:c.5195_5196delinsTA	p.Ser1732Leu	p.S1732L	ENST00000373344	NM_000489.3	1732	tCT/tTA																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913396		P-0054666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	37	381	0	ENST00000349496.5:c.95A>T	p.Asp32Val	p.D32V	ENST00000349496	NM_001904.3	32	gAc/gTc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729844	41729844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	163	542	0	ENST00000242208.4:c.685C>T	p.Arg229Trp	p.R229W	ENST00000242208	NM_002192.2	229	Cgg/Tgg																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46532741	46532741	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	66	365	0	ENST00000262741.5:c.337del	p.Ile113Ter	p.I113*	ENST00000262741	NM_003629.3	113	Ata/ta																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906566	32906566	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	37	354	0	ENST00000380152.3:c.956del	p.Asn319IlefsTer5	p.N319Ifs*5	ENST00000380152		317	acA/ac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061222	38061222	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	193	561	0	ENST00000250448.2:c.767del	p.Asn256ThrfsTer65	p.N256Tfs*65	ENST00000250448	NM_004496.3	256	aAc/ac																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085851	16085851	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	180	602	0	ENST00000281043.3:c.1027G>T	p.Asp343Tyr	p.D343Y	ENST00000281043	NM_005378.4	343	Gat/Tat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0054668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	282	381	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578195	7578197	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0054668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	510	723	1	ENST00000269305.4:c.652_654del	p.Val218del	p.V218del	ENST00000269305	NM_001126112.2	218	GTG/-																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097775	27097775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	183	483	0	ENST00000324856.7:c.3364G>A	p.Asp1122Asn	p.D1122N	ENST00000324856	NM_006015.4	1122	Gat/Aat																																																																															
TET1	80312	MSKCC	GRCh37	10	70451203	70451203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	261	648	0	ENST00000373644.4:c.6043C>T	p.His2015Tyr	p.H2015Y	ENST00000373644	NM_030625.2	2015	Cac/Tac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499384	89499384	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	157	491	0	ENST00000336596.2:c.2554G>C	p.Ala852Pro	p.A852P	ENST00000336596	NM_005233.5	852	Gcc/Ccc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522558	67522558	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	86	299	0	ENST00000274335.5:c.55G>C	p.Glu19Gln	p.E19Q	ENST00000274335		19	Gaa/Caa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	134	315	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	408	707	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38282214	38282214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	90	587	0	ENST00000425967.3:c.842G>A	p.Arg281Gln	p.R281Q	ENST00000425967	NM_001174067.1	281	cGg/cAg																																																																															
MGA	23269	MSKCC	GRCh37	15	42003191	42003191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	69	525	0	ENST00000219905.7:c.2728C>T	p.Arg910Ter	p.R910*	ENST00000219905	NM_001164273.1	910	Cga/Tga																																																																															
TET1	80312	MSKCC	GRCh37	10	70404613	70404613	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	59	536	0	ENST00000373644.4:c.2127G>T	p.Lys709Asn	p.K709N	ENST00000373644	NM_030625.2	709	aaG/aaT																																																																															
MGA	23269	MSKCC	GRCh37	15	42058279	42058279	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	43	335	0	ENST00000219905.7:c.7999G>C	p.Gly2667Arg	p.G2667R	ENST00000219905	NM_001164273.1	2667	Ggt/Cgt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420294	88420294	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	67	489	0	ENST00000360948.2:c.2392G>T	p.Glu798Ter	p.E798*	ENST00000360948	NM_001012338.2	798	Gag/Tag																																																																															
CYLD	1540	MSKCC	GRCh37	16	50821707	50821707	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	24	379	0	ENST00000398568.2:c.2043A>C	p.Glu681Asp	p.E681D	ENST00000398568	NM_001042412.1	681	gaA/gaC																																																																															
STK11	6794	MSKCC	GRCh37	19	1220550	1220593	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCCCTGAGGGCTGCACGGCACCGCCACAGGCACTGCACCCGTT	CTCCCTGAGGGCTGCACGGCACCGCCACAGGCACTGCACCCGTT	-			P-0054689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	86	789	0	ENST00000326873.7:c.598-29_612del		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11169530	11169530	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	89	679	1	ENST00000344626.4:c.4600C>T	p.Gln1534Ter	p.Q1534*	ENST00000344626	NM_003072.3	1534	Cag/Tag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251802	212251803	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0054689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	32	330	0	ENST00000342788.4:c.3256_3257delinsTT	p.Ser1086Phe	p.S1086F	ENST00000342788	NM_005235.2	1086	AGc/TTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391096	89391096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	71	551	0	ENST00000336596.2:c.1162G>A	p.Gly388Arg	p.G388R	ENST00000336596	NM_005233.5	388	Gga/Aga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0054712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	235	472	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155583	56155583	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	43	351	0	ENST00000399503.3:c.675G>T	p.Met225Ile	p.M225I	ENST00000399503	NM_005921.1	225	atG/atT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0054590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	142	324	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673775	30673776	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0054590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	92	544	1	ENST00000376406.3:c.3184_3185delinsAT	p.Ala1062Ile	p.A1062I	ENST00000376406	NM_014641.2	1062	GCa/ATa																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821356	32821356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	159	1249	0	ENST00000354258.4:c.238C>T	p.Leu80Phe	p.L80F	ENST00000354258	NM_000593.5	80	Ctc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0053434-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			184	34	326	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0053434-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	75	769	3	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106261	27106261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053434-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	71	624	0	ENST00000324856.7:c.5872G>A	p.Glu1958Lys	p.E1958K	ENST00000324856	NM_006015.4	1958	Gaa/Aaa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185169080	185169080	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053434-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			188	42	481	0	ENST00000265026.3:c.1175G>C	p.Ser392Thr	p.S392T	ENST00000265026	NM_004721.4	392	aGt/aCt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971025	21971026	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0053434-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			211	63	530	0	ENST00000304494.5:c.331_332dup	p.Arg112AlafsTer35	p.R112Afs*35	ENST00000304494	NM_000077.4	111	ggc/ggGGc																																																																															
VHL	7428	MSKCC	GRCh37	3	10183722	10183722	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	429	826	0	ENST00000256474.2:c.191G>C	p.Arg64Pro	p.R64P	ENST00000256474	NM_000551.3	64	cGc/cCc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797224	135797234	+	frameshift_variant	Frame_Shift_Del	DEL	AGTCTCCAGGT	AGTCTCCAGGT	-			P-0054515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	91	205	0	ENST00000298552.3:c.635_645del	p.Asn212IlefsTer2	p.N212Ifs*2	ENST00000298552	NM_001162426.1	212	aACCTGGAGACT/a																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	202	343	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0054631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	50	312	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164864	36164864	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	199	966	0	ENST00000300305.3:c.1011del	p.Ala338ArgfsTer256	p.A338Rfs*256	ENST00000300305		337	ccC/cc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040962	47040963	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0054631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	169	942	0	ENST00000329236.7:c.1261_1262del	p.Ala421ProfsTer18	p.A421Pfs*18	ENST00000329236	NM_001204466.1	420	CGc/c																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805044	89805044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	78	825	1	ENST00000389301.3:c.4333G>A	p.Asp1445Asn	p.D1445N	ENST00000389301	NM_000135.2	1445	Gac/Aac																																																																															
FLT1	2321	MSKCC	GRCh37	13	28963952	28963952	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	42	327	0	ENST00000282397.4:c.1950G>T	p.Lys650Asn	p.K650N	ENST00000282397	NM_002019.4	650	aaG/aaT																																																																															
MED12	9968	MSKCC	GRCh37	X	70348280	70348280	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	62	674	0	ENST00000374080.3:c.3344G>T	p.Cys1115Phe	p.C1115F	ENST00000374080		1115	tGc/tTc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46509377	46509377	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	129	570	0	ENST00000262741.5:c.1354G>T	p.Val452Phe	p.V452F	ENST00000262741	NM_003629.3	452	Gtt/Ttt																																																																															
ATM	472	MSKCC	GRCh37	11	108119678	108119678	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0054631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	23	159	0	ENST00000278616.4:c.1084A>T	p.Arg362Ter	p.R362*	ENST00000278616	NM_000051.3	362	Aga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023564	31023564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	111	537	0	ENST00000375687.4:c.3049G>A	p.Asp1017Asn	p.D1017N	ENST00000375687	NM_015338.5	1017	Gac/Aac																																																																															
EP300	2033	MSKCC	GRCh37	22	41572374	41572374	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	88	748	1	ENST00000263253.7:c.4903A>G	p.Arg1635Gly	p.R1635G	ENST00000263253	NM_001429.3	1635	Agg/Ggg																																																																															
E2F3	1871	MSKCC	GRCh37	6	20488456	20488456	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	83	417	1	ENST00000346618.3:c.1112A>G	p.Asn371Ser	p.N371S	ENST00000346618	NM_001949.4	371	aAt/aGt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169992	32169992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	185	909	1	ENST00000375023.3:c.3616G>A	p.Gly1206Arg	p.G1206R	ENST00000375023	NM_004557.3	1206	Gga/Aga																																																																															
TAP1	6890	MSKCC	GRCh37	6	32814940	32814940	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	157	697	0	ENST00000354258.4:c.2125C>A	p.Gln709Lys	p.Q709K	ENST00000354258	NM_000593.5	709	Cag/Aag																																																																															
MED12	9968	MSKCC	GRCh37	X	70352346	70352346	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	132	634	0	ENST00000374080.3:c.4373G>T	p.Gly1458Val	p.G1458V	ENST00000374080		1458	gGt/gTt																																																																															
XIAP	331	MSKCC	GRCh37	X	123041002	123041002	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	14	119	0	ENST00000355640.3:c.1465A>T	p.Thr489Ser	p.T489S	ENST00000355640		489	Act/Tct																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736307	243736308	+	missense_variant	Missense_Mutation	DNP	CG	CG	TT			P-0054631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	32	428	0	ENST00000263826.5:c.739_740delinsAA	p.Arg247Asn	p.R247N	ENST00000263826	NM_005465.4	247	CGc/AAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0054633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	33	901	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730876	40730876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	46	809	2	ENST00000373198.4:c.3659G>A	p.Arg1220Gln	p.R1220Q	ENST00000373198	NM_133170.3	1220	cGg/cAg																																																																															
TP63	8626	MSKCC	GRCh37	3	189582193	189582193	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1198643405		P-0054633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	28	447	1	ENST00000264731.3:c.752G>A	p.Arg251His	p.R251H	ENST00000264731	NM_003722.4	251	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0054634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	90	405	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520166	176520166	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs911440999		P-0054634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	161	918	1	ENST00000292408.4:c.1085C>T	p.Ala362Val	p.A362V	ENST00000292408	NM_213647.1	362	gCg/gTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57857547	57857547	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	50	676	0	ENST00000228682.2:c.73C>T	p.Gln25Ter	p.Q25*	ENST00000228682	NM_005269.2	25	Cag/Tag																																																																															
CD79B	974	MSKCC	GRCh37	17	62007212	62007212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	165	909	0	ENST00000392795.3:c.470C>T	p.Thr157Met	p.T157M	ENST00000392795	NM_001039933.1	157	aCg/aTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8471044	8471044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	61	363	0	ENST00000356435.5:c.3455G>T	p.Gly1152Val	p.G1152V	ENST00000356435		1152	gGg/gTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221954	1221954	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	146	875	0	ENST00000326873.7:c.869T>G	p.Leu290Arg	p.L290R	ENST00000326873	NM_000455.4	290	cTt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G	rs587782272		P-0054634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	115	628	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
CYLD	1540	MSKCC	GRCh37	16	50825539	50825539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762650238		P-0054634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	98	370	0	ENST00000398568.2:c.2170G>A	p.Val724Ile	p.V724I	ENST00000398568	NM_001042412.1	724	Gtt/Att																																																																															
AR	367	MSKCC	GRCh37	X	66765598	66765598	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	70	998	0	ENST00000374690.3:c.610G>T	p.Glu204Ter	p.E204*	ENST00000374690	NM_000044.3	204	Gaa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106324	27106324	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0054634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	146	673	0	ENST00000324856.7:c.5935A>T	p.Lys1979Ter	p.K1979*	ENST00000324856	NM_006015.4	1979	Aag/Tag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71008453	71008453	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	43	382	0	ENST00000318789.4:c.1979A>G	p.Asp660Gly	p.D660G	ENST00000318789	NM_032682.5	660	gAt/gGt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467520	66467520	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	54	307	0	ENST00000273854.3:c.749C>G	p.Ala250Gly	p.A250G	ENST00000273854	NM_004439.5	250	gCt/gGt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	265	389	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0054637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	475	953	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453179	140453179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	209	322	0	ENST00000288602.6:c.1756G>A	p.Glu586Lys	p.E586K	ENST00000288602	NM_004333.4	586	Gaa/Aaa																																																																															
MPL	4352	MSKCC	GRCh37	1	43814542	43814542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	91	533	1	ENST00000372470.3:c.1337G>A	p.Gly446Glu	p.G446E	ENST00000372470	NM_005373.2	446	gGa/gAa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643561	52643561	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	39	540	0	ENST00000394830.3:c.2335C>A	p.Gln779Lys	p.Q779K	ENST00000394830	NM_018313.4	779	Caa/Aaa																																																																															
ATR	545	MSKCC	GRCh37	3	142186829	142186829	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	46	393	0	ENST00000350721.4:c.6634G>T	p.Val2212Phe	p.V2212F	ENST00000350721	NM_001184.3	2212	Gtt/Ttt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061180	38061195	+	protein_altering_variant	In_Frame_Del	DEL	TTCTCGCACTTGAAGC	TTCTCGCACTTGAAGC	AAGT			P-0054637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	205	524	2	ENST00000250448.2:c.794_809delinsACTT	p.Arg265_Lys270delinsHisLeu	p.R265_K270delinsHL	ENST00000250448	NM_004496.3	265	cGCTTCAAGTGCGAGAAg/cACTTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0054652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	182	596	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750600586		P-0054652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	434	834	1	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0054652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	113	324	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066745	30066745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	170	392	1	ENST00000331968.5:c.2386G>A	p.Ala796Thr	p.A796T	ENST00000331968	NM_002742.2	796	Gca/Aca																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945613	38945617	+	frameshift_variant	Frame_Shift_Del	DEL	CTCAG	CTCAG	-			P-0054652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	42	228	0	ENST00000357387.3:c.4609_4613del	p.Leu1537CysfsTer4	p.L1537Cfs*4	ENST00000357387	NM_152756.3	1537	CTGAGt/t																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	39	317	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0054655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	48	780	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0054655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	22	285	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	118	621	1	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0054657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	66	354	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448529	89448529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	151	374	0	ENST00000336596.2:c.1493G>A	p.Ser498Asn	p.S498N	ENST00000336596	NM_005233.5	498	aGc/aAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55140721	55140721	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	104	518	0	ENST00000257290.5:c.1582G>C	p.Ala528Pro	p.A528P	ENST00000257290	NM_006206.4	528	Gct/Cct																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467590	66467590	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746706656		P-0054657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	33	277	0	ENST00000273854.3:c.679C>T	p.Arg227Cys	p.R227C	ENST00000273854	NM_004439.5	227	Cgt/Tgt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11129635	11129635	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0054657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	48	551	0	ENST00000344626.4:c.2441C>A	p.Thr814Lys	p.T814K	ENST00000344626	NM_003072.3	814	aCg/aAg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117709118	117709118	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	97	375	0	ENST00000368508.3:c.1839A>C	p.Lys613Asn	p.K613N	ENST00000368508	NM_002944.2	613	aaA/aaC																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129160	64129160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	57	787	0	ENST00000334205.4:c.698C>T	p.Thr233Met	p.T233M	ENST00000334205	NM_003942.2	233	aCg/aTg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73336149	73336149	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	38	202	0	ENST00000377767.4:c.2254G>T	p.Val752Leu	p.V752L	ENST00000377767	NM_014953.3	752	Gtg/Ttg																																																																															
MGA	23269	MSKCC	GRCh37	15	41988659	41988659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	58	388	0	ENST00000219905.7:c.1451C>T	p.Ser484Phe	p.S484F	ENST00000219905	NM_001164273.1	484	tCt/tTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602310	10602310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	167	812	0	ENST00000171111.5:c.1268G>T	p.Gly423Val	p.G423V	ENST00000171111	NM_203500.1	423	gGc/gTc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966145	25966145	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	135	578	0	ENST00000435504.4:c.3061G>T	p.Gly1021Cys	p.G1021C	ENST00000435504		1021	Ggc/Tgc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748128	41748128	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	70	207	0	ENST00000226382.2:c.641G>T	p.Gly214Val	p.G214V	ENST00000226382	NM_003924.3	214	gGc/gTc																																																																															
TET2	54790	MSKCC	GRCh37	4	106156684	106156684	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	71	326	0	ENST00000380013.4:c.1585T>A	p.Cys529Ser	p.C529S	ENST00000380013	NM_001127208.2	529	Tgc/Agc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244197	153244197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	86	437	0	ENST00000281708.4:c.1960G>T	p.Gly654Cys	p.G654C	ENST00000281708	NM_033632.3	654	Ggt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153253873	153253873	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0054657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	40	199	0	ENST00000281708.4:c.862-2A>T		p.X288_splice	ENST00000281708	NM_033632.3	288																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176523287	176523287	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0054657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	160	708	0	ENST00000292408.4:c.1945-1G>T		p.X649_splice	ENST00000292408	NM_213647.1	649																																																																																
EPHA7	2045	MSKCC	GRCh37	6	93955137	93955137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	32	455	0	ENST00000369303.4:c.2761G>T	p.Asp921Tyr	p.D921Y	ENST00000369303	NM_004440.3	921	Gat/Tat																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467738	50467738	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	84	577	0	ENST00000331340.3:c.973G>T	p.Glu325Ter	p.E325*	ENST00000331340	NM_006060.4	325	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			180	150	411	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			218	92	613	0	ENST00000269305.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000269305	NM_001126112.2	273	Cgt/Agt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63759924	63759924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			195	25	360	1	ENST00000279873.7:c.577C>T	p.Arg193Cys	p.R193C	ENST00000279873	NM_032199.2	193	Cgc/Tgc																																																																															
NBN	4683	MSKCC	GRCh37	8	90955596	90955596	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0054122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			168	56	286	0	ENST00000265433.3:c.2071-2A>G		p.X691_splice	ENST00000265433	NM_002485.4	691																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602901	10602901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			359	50	854	1	ENST00000171111.5:c.677G>A	p.Cys226Tyr	p.C226Y	ENST00000171111	NM_203500.1	226	tGc/tAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528764	8528764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			163	255	408	0	ENST00000356435.5:c.368G>T	p.Arg123Met	p.R123M	ENST00000356435		123	aGg/aTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42042235	42042235	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			160	72	392	0	ENST00000219905.7:c.6430G>T	p.Gly2144Ter	p.G2144*	ENST00000219905	NM_001164273.1	2144	Gga/Tga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420340	88420340	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			198	61	406	0	ENST00000360948.2:c.2346C>G	p.Cys782Trp	p.C782W	ENST00000360948	NM_001012338.2	782	tgC/tgG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917516	178917516	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			140	44	346	0	ENST00000263967.3:c.391G>C	p.Val131Leu	p.V131L	ENST00000263967	NM_006218.2	131	Gtt/Ctt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32944571	32944571	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			248	29	499	0	ENST00000380152.3:c.8364G>C	p.Trp2788Cys	p.W2788C	ENST00000380152		2788	tgG/tgC																																																																															
DIS3	22894	MSKCC	GRCh37	13	73347893	73347893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			185	31	276	0	ENST00000377767.4:c.1168G>T	p.Ala390Ser	p.A390S	ENST00000377767	NM_014953.3	390	Gct/Tct																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857919	9857919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			230	96	597	0	ENST00000330684.3:c.3482G>A	p.Gly1161Glu	p.G1161E	ENST00000330684	NM_001134407.1	1161	gGg/gAg																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804396	46804396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			259	65	558	1	ENST00000290295.7:c.611G>T	p.Gly204Val	p.G204V	ENST00000290295	NM_006361.5	204	gGg/gTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42795096	42795096	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			269	92	947	0	ENST00000575354.2:c.2176A>G	p.Ser726Gly	p.S726G	ENST00000575354	NM_015125.3	726	Agc/Ggc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866376	42866376	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			290	51	810	0	ENST00000398585.3:c.256G>T	p.Val86Leu	p.V86L	ENST00000398585	NM_001135099.1	86	Gtg/Ttg																																																																															
APC	324	MSKCC	GRCh37	5	112111323	112111325	+	splice_acceptor_variant,intron_variant	Splice_Site	ONP	TAG	TAG	ATA			P-0054122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			68	25	142	1	ENST00000257430.4:c.423-3_423-1delinsATA		p.X141_splice	ENST00000257430	NM_000038.5	141																																																																																
CARD11	84433	MSKCC	GRCh37	7	2956988	2956988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			318	63	621	0	ENST00000396946.4:c.2639C>A	p.Thr880Lys	p.T880K	ENST00000396946	NM_032415.4	880	aCa/aAa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513284	106513284	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			176	38	296	0	ENST00000359195.3:c.2188C>A	p.His730Asn	p.H730N	ENST00000359195	NM_002649.2	730	Cac/Aac																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981773	70981773	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	86	883	0	ENST00000276594.2:c.323C>A	p.Pro108His	p.P108H	ENST00000276594	NM_024504.3	108	cCc/cAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404588	8404588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			128	116	339	0	ENST00000356435.5:c.4159G>A	p.Ala1387Thr	p.A1387T	ENST00000356435		1387	Gcg/Acg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413025	63413025	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			323	130	826	0	ENST00000330258.3:c.142G>T	p.Gly48Cys	p.G48C	ENST00000330258	NM_152424.3	48	Ggc/Tgc																																																																															
MED12	9968	MSKCC	GRCh37	X	70344179	70344179	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			274	61	575	0	ENST00000374080.3:c.1915G>T	p.Asp639Tyr	p.D639Y	ENST00000374080		639	Gat/Tat																																																																															
ATRX	546	MSKCC	GRCh37	X	76855969	76855969	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			263	75	520	0	ENST00000373344.5:c.5631G>T	p.Gln1877His	p.Q1877H	ENST00000373344	NM_000489.3	1877	caG/caT																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197715	123197715	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			192	50	366	0	ENST00000218089.9:c.1839G>C	p.Leu613Phe	p.L613F	ENST00000218089	NM_001042749.1	613	ttG/ttC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914223	32914223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	76	345	0	ENST00000380152.3:c.5731G>A	p.Asp1911Asn	p.D1911N	ENST00000380152		1911	Gat/Aat																																																																															
SOS1	6654	MSKCC	GRCh37	2	39241008	39241008	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0054232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	35	374	0	ENST00000402219.2:c.2063G>A	p.Arg688Gln	p.R688Q	ENST00000402219	NM_005633.3	688	cGa/cAa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032254	26032254	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	56	373	0	ENST00000244661.2:c.35C>G	p.Thr12Ser	p.T12S	ENST00000244661	NM_003537.3	12	aCc/aGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151864356	151864357	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	36	531	0	ENST00000262189.6:c.9624dup	p.Lys3209Ter	p.K3209*	ENST00000262189	NM_170606.2	3208	-/T																																																																															
MYC	4609	MSKCC	GRCh37	8	128750789	128750789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	127	754	1	ENST00000377970.2:c.326C>T	p.Ser109Phe	p.S109F	ENST00000377970	NM_002467.4	109	tCc/tTc																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47604182	47604182	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054440-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			270	18	412	0	ENST00000263735.4:c.521A>G	p.Tyr174Cys	p.Y174C	ENST00000263735	NM_002354.2	174	tAt/tGt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40979307	40979307	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054440-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			742	77	606	0	ENST00000373198.4:c.1826T>C	p.Val609Ala	p.V609A	ENST00000373198	NM_133170.3	609	gTg/gCg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170013697	170013697	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0054440-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			131	10	361	0	ENST00000295797.4:c.1418-2A>G		p.X473_splice	ENST00000295797	NM_002740.5	473																																																																																
EPHA7	2045	MSKCC	GRCh37	6	93979249	93979251	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0054440-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			188	28	329	0	ENST00000369303.4:c.1577_1579del	p.Tyr526_Ser527delinsCys	p.Y526_S527delinsC	ENST00000369303	NM_004440.3	526	tACAgt/tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0054570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	50	446	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444455	50444455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	55	467	0	ENST00000331340.3:c.385C>T	p.Pro129Ser	p.P129S	ENST00000331340	NM_006060.4	129	Ccc/Tcc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591830	+	inframe_deletion	In_Frame_Del	DEL	GAAATG	GAAATG	-			P-0054570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	68	575	0	ENST00000342988.3:c.990_995del	p.Glu330_Met331del	p.E330_M331del	ENST00000342988	NM_005359.5	330	GAAATG/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	405	453	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0054572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	397	734	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604797	48604797	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	216	466	0	ENST00000342988.3:c.1619T>A	p.Leu540His	p.L540H	ENST00000342988	NM_005359.5	540	cTt/cAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244107	5244107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	437	993	0	ENST00000357368.4:c.1375G>A	p.Gly459Ser	p.G459S	ENST00000357368	NM_002850.3	459	Ggc/Agc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435585	56435585	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	436	975	0	ENST00000407977.2:c.1552C>T	p.Gln518Ter	p.Q518*	ENST00000407977		518	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0054573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	150	655	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978320	2978320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	76	778	1	ENST00000396946.4:c.1010G>A	p.Arg337Gln	p.R337Q	ENST00000396946	NM_032415.4	337	cGa/cAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453153	140453153	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	36	346	0	ENST00000288602.6:c.1782T>A	p.Asp594Glu	p.D594E	ENST00000288602	NM_004333.4	594	gaT/gaA																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117677	70117677	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	100	823	0	ENST00000245479.2:c.145C>T	p.Gln49Ter	p.Q49*	ENST00000245479	NM_000346.3	49	Cag/Tag																																																																															
CYLD	1540	MSKCC	GRCh37	16	50830354	50830354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	76	434	0	ENST00000398568.2:c.2797C>T	p.Arg933Ter	p.R933*	ENST00000398568	NM_001042412.1	933	Cga/Tga																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103519067	103519067	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	62	599	0	ENST00000355739.4:c.2405A>T	p.Gln802Leu	p.Q802L	ENST00000355739	NM_000123.3	802	cAg/cTg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672569	30672569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	56	624	0	ENST00000376406.3:c.4391C>T	p.Pro1464Leu	p.P1464L	ENST00000376406	NM_014641.2	1464	cCt/cTt																																																																															
MED12	9968	MSKCC	GRCh37	X	70353051	70353051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	44	393	0	ENST00000374080.3:c.4606C>T	p.Arg1536Trp	p.R1536W	ENST00000374080		1536	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0054575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	596	740	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881462	111881462	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs199602272		P-0054575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	224	558	0	ENST00000393256.3:c.140A>G	p.Asn47Ser	p.N47S	ENST00000393256	NM_006538.4	47	aAt/aGt																																																																															
PMS1	5378	MSKCC	GRCh37	2	190732553	190732553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	176	288	0	ENST00000441310.2:c.2371G>A	p.Val791Ile	p.V791I	ENST00000441310	NM_000534.4	791	Gtt/Att																																																																															
TET1	80312	MSKCC	GRCh37	10	70451206	70451206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	278	594	0	ENST00000373644.4:c.6046G>A	p.Gly2016Ser	p.G2016S	ENST00000373644	NM_030625.2	2016	Ggc/Agc																																																																															
ATM	472	MSKCC	GRCh37	11	108115524	108115525	+	missense_variant	Missense_Mutation	DNP	GA	GA	TC			P-0054575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	170	320	0	ENST00000278616.4:c.672_673inv	p.Lys224_Ser225delinsAsnArg	p.K224_S225delinsNR	ENST00000278616	NM_000051.3	224	aaGAgc/aaTCgc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724535	43724535	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	241	747	0	ENST00000382044.4:c.3532A>G	p.Thr1178Ala	p.T1178A	ENST00000382044	NM_001141980.1	1178	Act/Gct																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137528134	137528134	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	69	292	0	ENST00000367739.4:c.166G>C	p.Val56Leu	p.V56L	ENST00000367739	NM_000416.2	56	Gtc/Ctc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581160	48581175	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	GTATGATGGTGAAGGA	GTATGATGGTGAAGGA	TATAGCTCC			P-0054575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	126	264	0	ENST00000342988.3:c.464_479delinsTATAGCTCC	p.Ser155IlefsTer2	p.S155Ifs*2	ENST00000342988	NM_005359.5	155	aGTATGATGGTGAAGGAt/aTATAGCTCCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0054577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	70	349	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193104569	193104569	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	24	365	0	ENST00000367435.3:c.356A>C	p.Gln119Pro	p.Q119P	ENST00000367435	NM_024529.4	119	cAg/cCg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244427	46244427	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	70	433	0	ENST00000334344.6:c.2521C>T	p.Gln841Ter	p.Q841*	ENST00000334344	NM_152641.2	841	Cag/Tag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508955	106508955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	24	570	0	ENST00000359195.3:c.949G>A	p.Glu317Lys	p.E317K	ENST00000359195	NM_002649.2	317	Gag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061221	38061235	+	inframe_deletion	In_Frame_Del	DEL	GTTCTCGAACATGTT	GTTCTCGAACATGTT	-			P-0054578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	77	612	0	ENST00000250448.2:c.754_768del	p.Asn252_Asn256del	p.N252_N256del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAAC/-																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804153	46804153	+	stop_lost	Nonstop_Mutation	SNP	T	T	A			P-0054578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	111	608	0	ENST00000290295.7:c.854A>T	p.Ter285LeuextTer32	p.*285Lext*32	ENST00000290295	NM_006361.5	285	tAa/tTa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44966691	44966694	+	frameshift_variant	Frame_Shift_Del	DEL	ATTG	ATTG	-			P-0054578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	58	236	0	ENST00000377967.4:c.3916_3919del	p.Leu1306GlyfsTer49	p.L1306Gfs*49	ENST00000377967	NM_021140.2	1305	acATTG/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0054580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	67	845	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	51	388	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023076	150023076	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs187759014		P-0054580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	39	675	1	ENST00000253339.5:c.187C>T	p.Arg63Ter	p.R63*	ENST00000253339		63	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0054580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	43	632	2	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130344	11130345	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0054580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	59	955	0	ENST00000344626.4:c.2583_2584del	p.Tyr862HisfsTer82	p.Y862Hfs*82	ENST00000344626	NM_003072.3	861	gaGTac/gaac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971100	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGG	CCCGG	-			P-0054580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	24	432	0	ENST00000304494.5:c.258_262del	p.Arg87GlyfsTer31	p.R87Gfs*31	ENST00000304494	NM_000077.4	86	gcCCGGGag/gcag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	99	388	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0054583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	57	490	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0054583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	99	673	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0054583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	137	298	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	153	450	1	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37649017	37649017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	51	248	0	ENST00000447079.4:c.2122C>T	p.Arg708Cys	p.R708C	ENST00000447079	NM_015083.1	708	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0054586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	132	873	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	94	811	2	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031873	10031873	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	90	954	0	ENST00000330684.3:c.950A>C	p.Lys317Thr	p.K317T	ENST00000330684	NM_001134407.1	317	aAg/aCg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118715	115118715	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	157	779	0	ENST00000257566.3:c.626T>G	p.Leu209Arg	p.L209R	ENST00000257566	NM_016569.3	209	cTc/cGc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480355	89480355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	31	401	0	ENST00000336596.2:c.2192C>T	p.Ala731Val	p.A731V	ENST00000336596	NM_005233.5	731	gCa/gTa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44911048	44911048	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0054586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	29	400	0	ENST00000377967.4:c.748+1G>A		p.X250_splice	ENST00000377967	NM_021140.2	250																																																																																
RBM10	8241	MSKCC	GRCh37	X	47040911	47040911	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	176	623	0	ENST00000329236.7:c.1207G>T	p.Glu403Ter	p.E403*	ENST00000329236	NM_001204466.1	403	Gag/Tag																																																																															
BTK	695	MSKCC	GRCh37	X	100625010	100625010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	15	336	0	ENST00000308731.7:c.367C>T	p.Arg123Trp	p.R123W	ENST00000308731	NM_000061.2	123	Cgg/Tgg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61724108	61724109	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0054587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	22	411	0	ENST00000401558.2:c.793_794del	p.Leu265GlufsTer5	p.L265Efs*5	ENST00000401558	NM_003400.3	265	CTg/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	260	759	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
RB1	5925	MSKCC	GRCh37	13	48923126	48923126	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0054589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	133	277	0	ENST00000267163.4:c.574A>T	p.Lys192Ter	p.K192*	ENST00000267163	NM_000321.2	192	Aaa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100887	27100891	+	frameshift_variant	Frame_Shift_Del	DEL	GCGTG	GCGTG	-			P-0054589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	242	722	0	ENST00000324856.7:c.4169_4173del	p.Ser1390ThrfsTer53	p.S1390Tfs*53	ENST00000324856	NM_006015.4	1390	aGCGTG/a																																																																															
FLT1	2321	MSKCC	GRCh37	13	28893615	28893615	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	291	544	0	ENST00000282397.4:c.3231C>G	p.Ser1077Arg	p.S1077R	ENST00000282397	NM_002019.4	1077	agC/agG																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435662	56435662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	591	846	1	ENST00000407977.2:c.1475G>T	p.Gly492Val	p.G492V	ENST00000407977		492	gGc/gTc																																																																															
ALK	238	MSKCC	GRCh37	2	29917772	29917772	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1360	315	933	0	ENST00000389048.3:c.896C>G	p.Ser299Cys	p.S299C	ENST00000389048	NM_004304.4	299	tCc/tGc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71101721	71101722	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	97	327	0	ENST00000318789.4:c.476dup	p.Leu159PhefsTer11	p.L159Ffs*11	ENST00000318789	NM_032682.5	159	tta/ttTa																																																																															
KIT	3815	MSKCC	GRCh37	4	55589789	55589789	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	176	491	0	ENST00000288135.5:c.1271G>T	p.Gly424Val	p.G424V	ENST00000288135	NM_000222.2	424	gGc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0054613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	157	304	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850765	63850765	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	111	444	0	ENST00000279873.7:c.1543G>C	p.Glu515Gln	p.E515Q	ENST00000279873	NM_032199.2	515	Gag/Cag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048602	180048602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	290	692	0	ENST00000261937.6:c.1960G>A	p.Glu654Lys	p.E654K	ENST00000261937	NM_182925.4	654	Gaa/Aaa																																																																															
BLM	641	MSKCC	GRCh37	15	91341542	91341542	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	97	457	1	ENST00000355112.3:c.3333G>T	p.Met1111Ile	p.M1111I	ENST00000355112	NM_000057.2	1111	atG/atT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443703	49443703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	156	683	0	ENST00000301067.7:c.3668C>T	p.Ser1223Leu	p.S1223L	ENST00000301067	NM_003482.3	1223	tCa/tTa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123630	46123630	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	51	247	0	ENST00000334344.6:c.11C>G	p.Ser4Trp	p.S4W	ENST00000334344	NM_152641.2	4	tCg/tGg																																																																															
CDH1	999	MSKCC	GRCh37	16	68842594	68842594	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0054613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	209	479	0	ENST00000261769.5:c.532-2A>T		p.X178_splice	ENST00000261769	NM_004360.3	178																																																																																
MET	4233	MSKCC	GRCh37	7	116411588	116411588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	171	358	0	ENST00000397752.3:c.2767G>A	p.Val923Ile	p.V923I	ENST00000397752	NM_000245.2	923	Gta/Ata																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0054615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	216	673	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112173801	112173801	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	73	411	0	ENST00000257430.4:c.2510C>A	p.Ser837Ter	p.S837*	ENST00000257430	NM_000038.5	837	tCa/tAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434924	49434924	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201190869		P-0054615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	88	754	0	ENST00000301067.7:c.6629C>T	p.Pro2210Leu	p.P2210L	ENST00000301067	NM_003482.3	2210	cCg/cTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395213	139395213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	140	860	0	ENST00000277541.6:c.5725G>A	p.Val1909Ile	p.V1909I	ENST00000277541	NM_017617.3	1909	Gtc/Atc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016570	12016570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	109	416	0	ENST00000353533.5:c.706C>T	p.Leu236Phe	p.L236F	ENST00000353533	NM_003010.3	236	Ctt/Ttt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0054641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2451	654	640	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0054641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	420	355	1	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30103709	30103709	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	14	456	0	ENST00000331968.5:c.1229T>A	p.Val410Glu	p.V410E	ENST00000331968	NM_002742.2	410	gTg/gAg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618451	37618451	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	175	424	0	ENST00000447079.4:c.127A>G	p.Lys43Glu	p.K43E	ENST00000447079	NM_015083.1	43	Aag/Gag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039309	47039315	+	frameshift_variant	Frame_Shift_Del	DEL	GCACCAT	GCACCAT	-			P-0054641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	1053	771	0	ENST00000329236.7:c.702_708del	p.Ser234ArgfsTer22	p.S234Rfs*22	ENST00000329236	NM_001204466.1	234	aGCACCATg/ag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542191	187542191	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	43	371	0	ENST00000441802.2:c.5549A>G	p.His1850Arg	p.H1850R	ENST00000441802	NM_005245.3	1850	cAt/cGt																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0054648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	210	674	0	ENST00000397752.3:c.3028+1G>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
RBM10	8241	MSKCC	GRCh37	X	47044472	47044472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	98	284	2	ENST00000329236.7:c.1735C>T	p.Arg579Cys	p.R579C	ENST00000329236	NM_001204466.1	579	Cgc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257536	16257536	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	28	355	0	ENST00000375759.3:c.4801G>C	p.Asp1601His	p.D1601H	ENST00000375759	NM_015001.2	1601	Gac/Cac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916903	178916903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	80	524	0	ENST00000263967.3:c.290C>A	p.Pro97His	p.P97H	ENST00000263967	NM_006218.2	97	cCc/cAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435448	18435467	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCCATCATTCACAAGTTT	GCTCCATCATTCACAAGTTT	-			P-0054648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	23	290	0	ENST00000266497.5:c.434_453del	p.Ala145GlyfsTer2	p.A145Gfs*2	ENST00000266497		145	GCTCCATCATTCACAAGTTTg/g																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2094677	2094677	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	99	877	0	ENST00000219066.1:c.503A>G	p.Asp168Gly	p.D168G	ENST00000219066	NM_002528.5	168	gAt/gGt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943626	9943632	+	frameshift_variant	Frame_Shift_Del	DEL	ACTTCCG	ACTTCCG	-			P-0054648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	86	559	0	ENST00000330684.3:c.1309_1315del	p.Arg437SerfsTer12	p.R437Sfs*12	ENST00000330684	NM_001134407.1	437	CGGAAGTtc/tc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383160	42383165	+	inframe_deletion	In_Frame_Del	DEL	CAACGC	CAACGC	-			P-0054648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	126	793	0	ENST00000221972.3:c.185_190del	p.Ala62_Asn63del	p.A62_N63del	ENST00000221972	NM_021601.3	60	aaCAACGCc/aac																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198257728	198257728	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	30	332	0	ENST00000335508.6:c.3724G>C	p.Gly1242Arg	p.G1242R	ENST00000335508	NM_012433.2	1242	Gga/Cga																																																																															
MED12	9968	MSKCC	GRCh37	X	70357793	70357793	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0010976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	102	649	0	ENST00000374080.3:c.6044G>C	p.Arg2015Thr	p.R2015T	ENST00000374080		2015	aGg/aCg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	frameshift_variant	Frame_Shift_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	GCAA			P-0010976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	50	363	0	ENST00000275493.2:c.2238_2252delinsGCAA	p.Leu747GlnfsTer12	p.L747Qfs*12	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaGCAAa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0048564-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			222	75	311	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786204041		P-0048564-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			204	317	584	1	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103504584	103504584	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048564-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			349	109	330	1	ENST00000355739.4:c.205C>T	p.Arg69Ter	p.R69*	ENST00000355739	NM_000123.3	69	Cga/Tga																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027380	48027380	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048564-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			388	80	340	0	ENST00000234420.5:c.2258C>G	p.Ser753Cys	p.S753C	ENST00000234420	NM_000179.2	753	tCt/tGt																																																																															
RB1	5925	MSKCC	GRCh37	13	48921999	48921999	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048564-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	220	288	0	ENST00000267163.4:c.539C>T	p.Ser180Leu	p.S180L	ENST00000267163	NM_000321.2	180	tCg/tTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242477	+	frameshift_variant	Frame_Shift_Del	DEL	TTAAGAGAA	TTAAGAGAA	C			P-0048564-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			382	170	439	0	ENST00000275493.2:c.2239_2247delinsC	p.Leu747ArgfsTer13	p.L747Rfs*13	ENST00000275493	NM_005228.3	747	TTAAGAGAA/C																																																																															
TET1	80312	MSKCC	GRCh37	10	70412286	70412286	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048564-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	182	276	0	ENST00000373644.4:c.4396A>T	p.Ile1466Leu	p.I1466L	ENST00000373644	NM_030625.2	1466	Ata/Tta																																																																															
MED12	9968	MSKCC	GRCh37	X	70361751	70361751	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048564-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			520	329	698	2	ENST00000374080.3:c.6427C>T	p.Gln2143Ter	p.Q2143*	ENST00000374080		2143	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	62	333	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0049535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	218	747	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023626	27023650	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCTGCCGGCTCCAAGCCGCCT	GGCGGCTGCCGGCTCCAAGCCGCCT	-			P-0049535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	89	463	0	ENST00000324856.7:c.732_756del	p.Ala245ProfsTer110	p.A245Pfs*110	ENST00000324856	NM_006015.4	244	gcGGCGGCTGCCGGCTCCAAGCCGCCT/gc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105578	27105578	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	66	479	0	ENST00000324856.7:c.5192del	p.Leu1731Ter	p.L1731*	ENST00000324856	NM_006015.4	1730	aTt/at																																																																															
TET1	80312	MSKCC	GRCh37	10	70405961	70405961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	36	471	0	ENST00000373644.4:c.3475C>T	p.Arg1159Trp	p.R1159W	ENST00000373644	NM_030625.2	1159	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577110	7577110	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	225	789	0	ENST00000269305.4:c.828del	p.Cys277ValfsTer68	p.C277Vfs*68	ENST00000269305	NM_001126112.2	276	gcC/gc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575231	48575231	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0049535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	33	214	0	ENST00000342988.3:c.424+1G>C		p.X142_splice	ENST00000342988	NM_005359.5	142																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050221-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			440	764	359	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0050221-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	431	859	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149499667	149499667	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050221-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			608	316	626	1	ENST00000261799.4:c.2606G>A	p.Trp869Ter	p.W869*	ENST00000261799	NM_002609.3	869	tGg/tAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581246	48581267	+	frameshift_variant	Frame_Shift_Del	DEL	CATCCACCAAGTAATCGTGCAT	CATCCACCAAGTAATCGTGCAT	-			P-0050221-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			239	283	504	0	ENST00000342988.3:c.551_572del	p.His184ArgfsTer11	p.H184Rfs*11	ENST00000342988	NM_005359.5	184	CATCCACCAAGTAATCGTGCATcg/cg																																																																															
FANCC	2176	MSKCC	GRCh37	9	97869457	97869457	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050221-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			915	533	857	0	ENST00000289081.3:c.1424C>G	p.Thr475Arg	p.T475R	ENST00000289081	NM_000136.2	475	aCa/aGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782144		P-0052560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	471	1030	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272336	15272337	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs771517374		P-0052560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1233	1450	1004	2	ENST00000263388.2:c.6102dup	p.Gly2035ArgfsTer60	p.G2035Rfs*60	ENST00000263388	NM_000435.2	2034	-/C																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022412	12022412	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	343	926	0	ENST00000396373.4:c.518C>G	p.Pro173Arg	p.P173R	ENST00000396373	NM_001987.4	173	cCt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0053294-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			405	164	374	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224210	36224210	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053294-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	350	1013	1	ENST00000222270.7:c.6764del	p.Pro2255ArgfsTer6	p.P2255Rfs*6	ENST00000222270	NM_014727.1	2254	Ccc/cc																																																																															
CDH1	999	MSKCC	GRCh37	16	68842677	68842681	+	frameshift_variant	Frame_Shift_Del	DEL	TTTAT	TTTAT	-			P-0053294-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			510	361	719	1	ENST00000261769.5:c.614_618del	p.Phe205TyrfsTer2	p.F205Yfs*2	ENST00000261769	NM_004360.3	205	TTTATt/t																																																																															
TP53	7157	MSKCC	GRCh37	17	7578491	7578499	+	inframe_deletion	In_Frame_Del	DEL	CCCACAGCT	CCCACAGCT	-			P-0054131-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			916	304	1081	0	ENST00000269305.4:c.431_439del	p.Gln144_Val147delinsLeu	p.Q144_V147delinsL	ENST00000269305	NM_001126112.2	144	cAGCTGTGGGtt/ctt																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62323167	62323167	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054131-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			772	70	587	0	ENST00000508582.2:c.2701A>G	p.Lys901Glu	p.K901E	ENST00000508582		901	Aag/Gag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097622	27097622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	111	378	1	ENST00000324856.7:c.3216del	p.Lys1072AsnfsTer21	p.K1072Nfs*21	ENST00000324856	NM_006015.4	1071	Aaa/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101117	27101117	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	172	735	0	ENST00000324856.7:c.4403del	p.Pro1468LeufsTer13	p.P1468Lfs*13	ENST00000324856	NM_006015.4	1467	Ccc/cc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45796882	45796882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	146	507	0	ENST00000372115.3:c.1406C>T	p.Thr469Ile	p.T469I	ENST00000372115	NM_001048171.1	469	aCc/aTc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430780	78430780	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	79	330	0	ENST00000370768.2:c.609del	p.Gly205GlufsTer17	p.G205Efs*17	ENST00000370768	NM_003902.3	203	aaA/aa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745476	162745476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	61	222	0	ENST00000367921.3:c.1891C>T	p.Arg631Trp	p.R631W	ENST00000367921	NM_006182.2	631	Cgg/Tgg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206651514	206651514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	91	489	0	ENST00000367120.3:c.824G>A	p.Ser275Asn	p.S275N	ENST00000367120	NM_014002.3	275	aGc/aAc																																																																															
PARP1	142	MSKCC	GRCh37	1	226567646	226567647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1159330096		P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	152	517	1	ENST00000366794.5:c.1519dup	p.Ser507LysfsTer14	p.S507Kfs*14	ENST00000366794	NM_001618.3	507	agc/aAgc																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612759	228612759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	218	766	0	ENST00000366696.1:c.268G>A	p.Val90Met	p.V90M	ENST00000366696	NM_003493.2	90	Gtg/Atg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	146	734	2	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																															
TET1	80312	MSKCC	GRCh37	10	70446252	70446252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	137	396	1	ENST00000373644.4:c.5192C>T	p.Ser1731Phe	p.S1731F	ENST00000373644	NM_030625.2	1731	tCt/tTt																																																																															
SUFU	51684	MSKCC	GRCh37	10	104353408	104353408	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	161	635	0	ENST00000369902.3:c.613A>G	p.Thr205Ala	p.T205A	ENST00000369902	NM_016169.3	205	Act/Gct																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711244	114711244	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	88	297	0	ENST00000543371.1:c.259G>A	p.Ala87Thr	p.A87T	ENST00000543371	NM_001198531.1	87	Gcc/Acc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	202	370	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741954	17741954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	77	254	0	ENST00000250003.3:c.625G>A	p.Gly209Ser	p.G209S	ENST00000250003	NM_002478.4	209	Ggc/Agc																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981721	101981721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	86	286	0	ENST00000282441.5:c.147del	p.Ala50ProfsTer24	p.A50Pfs*24	ENST00000282441	NM_001130145.2	48	Ccc/cc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21628681	21628681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	63	403	0	ENST00000421138.2:c.1027G>A	p.Ala343Thr	p.A343T	ENST00000421138		343	Gct/Act																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440519	49440519	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	227	685	0	ENST00000301067.7:c.4291G>T	p.Glu1431Ter	p.E1431*	ENST00000301067	NM_003482.3	1431	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443641	49443641	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1064794007		P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	154	659	0	ENST00000301067.7:c.3730del	p.Val1244SerfsTer86	p.V1244Sfs*86	ENST00000301067	NM_003482.3	1244	Gtc/tc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856052	111856052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	384	633	2	ENST00000341259.2:c.103G>A	p.Val35Ile	p.V35I	ENST00000341259	NM_005475.2	35	Gta/Ata																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856377	111856377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	138	133	0	ENST00000341259.2:c.428G>A	p.Arg143His	p.R143H	ENST00000341259	NM_005475.2	143	cGc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133245228	133245229	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	197	720	0	ENST00000320574.5:c.2018dup	p.Glu674ArgfsTer36	p.E674Rfs*36	ENST00000320574	NM_006231.2	673	ggc/ggGc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32968840	32968840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	32	185	0	ENST00000380152.3:c.9271G>A	p.Val3091Ile	p.V3091I	ENST00000380152		3091	Gtc/Atc																																																																															
RB1	5925	MSKCC	GRCh37	13	48878127	48878127	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1276653645		P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	33	96	0	ENST00000267163.4:c.83del	p.Pro28LeufsTer37	p.P28Lfs*37	ENST00000267163	NM_000321.2	27	Ccc/cc																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68292242	68292242	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	71	266	0	ENST00000487270.1:c.146T>C	p.Val49Ala	p.V49A	ENST00000487270	NM_133509.3	49	gTc/gCc																																																																															
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	63	272	1	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																															
B2M	567	MSKCC	GRCh37	15	45007833	45007834	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	68	260	0	ENST00000558401.1:c.285dup	p.Asp96ArgfsTer2	p.D96Rfs*2	ENST00000558401	NM_004048.2	94	gaa/gAaa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66777511	66777511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	155	589	0	ENST00000307102.5:c.877C>T	p.Pro293Ser	p.P293S	ENST00000307102	NM_002755.3	293	Ccc/Tcc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	187	724	0	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222522	2222523	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1370428257		P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	250	916	1	ENST00000326181.6:c.722dup	p.Leu242AlafsTer55	p.L242Afs*55	ENST00000326181	NM_032271.2	239	tgc/tgCc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993008	72993008	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	182	674	0	ENST00000268489.5:c.1037del	p.Asn346ThrfsTer6	p.N346Tfs*6	ENST00000268489	NM_006885.3	346	aAc/ac																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349914	89349916	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs761762028		P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	221	740	0	ENST00000301030.4:c.3034_3036del	p.Lys1012del	p.K1012del	ENST00000301030	NM_001256183.1	1012	AAG/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577069	7577069	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55819519		P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	196	703	0	ENST00000269305.4:c.869G>A	p.Arg290His	p.R290H	ENST00000269305	NM_001126112.2	290	cGc/cAc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028656	12028656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	63	279	0	ENST00000353533.5:c.859C>T	p.Arg287Cys	p.R287C	ENST00000353533	NM_003010.3	287	Cgc/Tgc																																																																															
NF1	4763	MSKCC	GRCh37	17	29667646	29667646	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56013763		P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	83	308	0	ENST00000358273.4:c.7045C>T	p.Arg2349Cys	p.R2349C	ENST00000358273	NM_001042492.2	2349	Cgt/Tgt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37884268	37884268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	189	581	0	ENST00000269571.5:c.3739G>A	p.Glu1247Lys	p.E1247K	ENST00000269571		1247	Gag/Aag																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740618	58740618	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	104	426	0	ENST00000305921.3:c.1523T>C	p.Met508Thr	p.M508T	ENST00000305921	NM_003620.3	508	aTg/aCg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	76	431	4	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2207576	2207576	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	162	580	0	ENST00000398665.3:c.860T>C	p.Ile287Thr	p.I287T	ENST00000398665	NM_032482.2	287	aTc/aCc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101829	11101829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	200	668	1	ENST00000344626.4:c.1249C>T	p.Arg417Cys	p.R417C	ENST00000344626	NM_003072.3	417	Cgc/Tgc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353815	15353815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	106	373	0	ENST00000263377.2:c.3065C>T	p.Pro1022Leu	p.P1022L	ENST00000263377	NM_058243.2	1022	cCg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223858	36223858	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	228	958	3	ENST00000222270.7:c.6413del	p.Pro2138ArgfsTer15	p.P2138Rfs*15	ENST00000222270	NM_014727.1	2136	ctC/ct																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605204	46605204	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1459319402		P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	105	391	1	ENST00000263734.3:c.1421G>C	p.Ser474Thr	p.S474T	ENST00000263734	NM_001430.4	474	aGc/aCc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	49	362	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212578271	212578271	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	78	313	0	ENST00000342788.4:c.986T>C	p.Ile329Thr	p.I329T	ENST00000342788	NM_005235.2	329	aTt/aCt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225379453	225379453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	58	339	0	ENST00000264414.4:c.415G>A	p.Val139Ile	p.V139I	ENST00000264414	NM_003590.4	139	Gtc/Atc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264985	46264985	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	86	348	0	ENST00000371998.3:c.1860del	p.Lys620AsnfsTer18	p.K620Nfs*18	ENST00000371998		619	Aaa/aa																																																																															
CRKL	1399	MSKCC	GRCh37	22	21272450	21272450	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	221	828	0	ENST00000354336.3:c.228G>T	p.Gln76His	p.Q76H	ENST00000354336	NM_005207.3	76	caG/caT																																																																															
ATR	545	MSKCC	GRCh37	3	142226898	142226898	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	95	366	0	ENST00000350721.4:c.4906A>G	p.Ile1636Val	p.I1636V	ENST00000350721	NM_001184.3	1636	Ata/Gta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	111	416	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938935	178938935	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	55	338	0	ENST00000263967.3:c.2177A>C	p.Glu726Ala	p.E726A	ENST00000263967	NM_006218.2	726	gAa/gCa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806195	1806195	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201813356		P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	139	769	0	ENST00000260795.2:c.1214G>A	p.Gly405Asp	p.G405D	ENST00000260795		405	gGc/gAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	167	418	1	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38953142	38953142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	17	138	0	ENST00000357387.3:c.2842G>A	p.Val948Met	p.V948M	ENST00000357387	NM_152756.3	948	Gtg/Atg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	92	424	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112174214	112174214	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	32	250	0	ENST00000257430.4:c.2926del	p.Arg976GlufsTer4	p.R976Efs*4	ENST00000257430	NM_000038.5	975	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175631	112175631	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	62	271	0	ENST00000257430.4:c.4342del	p.Thr1448ProfsTer25	p.T1448Pfs*25	ENST00000257430	NM_000038.5	1447	cAa/ca																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858357	27858357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	130	583	0	ENST00000359303.2:c.214G>A	p.Val72Met	p.V72M	ENST00000359303	NM_003535.2	72	Gtg/Atg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099468	157099470	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-	rs1429292576		P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	71	308	0	ENST00000346085.5:c.413_415del	p.Asn138del	p.N138del	ENST00000346085	NM_020732.3	135	tcCAAc/tcc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502298	157502298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	116	421	0	ENST00000346085.5:c.3335del	p.Gly1112ValfsTer18	p.G1112Vfs*18	ENST00000346085	NM_020732.3	1111	Ggg/gg																																																																															
HGF	3082	MSKCC	GRCh37	7	81331901	81331901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	30	142	0	ENST00000222390.5:c.2183C>T	p.Ser728Leu	p.S728L	ENST00000222390	NM_000601.4	728	tCa/tTa																																																																															
SMO	6608	MSKCC	GRCh37	7	128829075	128829075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1247591045		P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	13	21	0	ENST00000249373.3:c.88del	p.Ala30ArgfsTer25	p.A30Rfs*25	ENST00000249373	NM_005631.4	28	cGg/cg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845707	151845707	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	127	471	0	ENST00000262189.6:c.13305G>A	p.Trp4435Ter	p.W4435*	ENST00000262189	NM_170606.2	4435	tgG/tgA																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345930	152345930	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	94	426	0	ENST00000359321.1:c.640C>T	p.Arg214Ter	p.R214*	ENST00000359321	NM_005431.1	214	Cga/Tga																																																																															
NBN	4683	MSKCC	GRCh37	8	90958376	90958376	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	49	269	0	ENST00000265433.3:c.2062T>A	p.Phe688Ile	p.F688I	ENST00000265433	NM_002485.4	688	Ttc/Atc																																																																															
TEK	7010	MSKCC	GRCh37	9	27180273	27180273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	171	451	0	ENST00000380036.4:c.937C>T	p.Leu313Phe	p.L313F	ENST00000380036	NM_000459.3	313	Ctt/Ttt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570293	87570293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202111708		P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	152	602	0	ENST00000277120.3:c.2033C>T	p.Ala678Val	p.A678V	ENST00000277120		678	gCg/gTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231239	98231239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	218	646	1	ENST00000331920.6:c.2044C>T	p.Arg682Cys	p.R682C	ENST00000331920	NM_000264.3	682	Cgc/Tgc																																																																															
ABL1	25	MSKCC	GRCh37	9	133759623	133759623	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	136	892	0	ENST00000318560.5:c.1950del	p.Leu651TrpfsTer43	p.L651Wfs*43	ENST00000318560	NM_005157.4	649	aCc/ac																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223899	53223899	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	371	420	0	ENST00000375401.3:c.3460del	p.Glu1154AsnfsTer110	p.E1154Nfs*110	ENST00000375401	NM_004187.3	1154	Gaa/aa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410252	63410252	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	276	326	0	ENST00000330258.3:c.2915C>A	p.Pro972His	p.P972H	ENST00000330258	NM_152424.3	972	cCt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	98	412	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162475122	162475122	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0054471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	24	447	0	ENST00000366898.1:c.618+1G>T		p.X206_splice	ENST00000366898	NM_004562.2	206																																																																																
MYOD1	4654	MSKCC	GRCh37	11	17741540	17741540	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	34	449	0	ENST00000250003.3:c.211C>A	p.Pro71Thr	p.P71T	ENST00000250003	NM_002478.4	71	Ccg/Acg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273868	18273868	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	37	736	0	ENST00000222254.8:c.1201C>G	p.Leu401Val	p.L401V	ENST00000222254	NM_005027.3	401	Ctc/Gtc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212570118	212570118	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0054471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	23	319	0	ENST00000342788.4:c.1125-2A>G		p.X375_splice	ENST00000342788	NM_005235.2	375																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40747140	40747140	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0054471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	41	434	1	ENST00000373198.4:c.2942G>T	p.Gly981Val	p.G981V	ENST00000373198	NM_133170.3	981	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574021	7574023	+	stop_gained	Nonsense_Mutation	ONP	CAC	CAC	AAA			P-0054471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	81	628	0	ENST00000269305.4:c.1004_1006delinsTTT	p.Arg335_Glu336delinsLeuTer	p.R335_E336delinsL*	ENST00000269305	NM_001126112.2	335	cGTGag/cTTTag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577126	7577126	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	109	682	2	ENST00000269305.4:c.812A>T	p.Glu271Val	p.E271V	ENST00000269305	NM_001126112.2	271	gAg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0054473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	41	415	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KDR	3791	MSKCC	GRCh37	4	55955567	55955567	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	46	466	0	ENST00000263923.4:c.3378G>T	p.Arg1126Ser	p.R1126S	ENST00000263923	NM_002253.2	1126	agG/agT																																																																															
TP53	7157	MSKCC	GRCh37	17	7579547	7579547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	95	776	0	ENST00000269305.4:c.140del	p.Pro47ArgfsTer76	p.P47Rfs*76	ENST00000269305	NM_001126112.2	47	cCg/cg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453149	140453149	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	58	380	0	ENST00000288602.6:c.1786G>C	p.Gly596Arg	p.G596R	ENST00000288602	NM_004333.4	596	Ggt/Cgt																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841159	15841159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	68	263	0	ENST00000307771.7:c.1243C>T	p.Arg415Trp	p.R415W	ENST00000307771	NM_005089.3	415	Cgg/Tgg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141108	55141108	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	46	451	0	ENST00000257290.5:c.1754G>T	p.Arg585Ile	p.R585I	ENST00000257290	NM_006206.4	585	aGa/aTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023168	27023168	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	12	123	0	ENST00000324856.7:c.275del	p.Gly92AlafsTer9	p.G92Afs*9	ENST00000324856	NM_006015.4	92	Ggc/gc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175956195	175956195	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0054473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	68	397	0	ENST00000367669.3:c.2017A>T	p.Lys673Ter	p.K673*	ENST00000367669	NM_022457.5	673	Aag/Tag																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125523743	125523743	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0054473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	14	205	0	ENST00000428830.2:c.1335+1G>T		p.X445_splice	ENST00000428830	NM_001114121.2	445																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11152142	11152142	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	96	678	0	ENST00000344626.4:c.4330G>T	p.Gly1444Trp	p.G1444W	ENST00000344626	NM_003072.3	1444	Ggg/Tgg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39285947	39285947	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0054473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	23	320	1	ENST00000402219.2:c.214-2A>T		p.X72_splice	ENST00000402219	NM_005633.3	72																																																																																
IRS1	3667	MSKCC	GRCh37	2	227661186	227661186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	115	907	0	ENST00000305123.5:c.2269C>T	p.Gln757Ter	p.Q757*	ENST00000305123	NM_005544.2	757	Cag/Tag																																																																															
SRC	6714	MSKCC	GRCh37	20	36030914	36030914	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	90	800	0	ENST00000358208.4:c.1193G>T	p.Gly398Val	p.G398V	ENST00000358208		398	gGa/gTa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213887	66213887	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	51	416	0	ENST00000273854.3:c.2543A>C	p.Glu848Ala	p.E848A	ENST00000273854	NM_004439.5	848	gAa/gCa																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975447	13975447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	56	412	0	ENST00000405192.2:c.440C>T	p.Pro147Leu	p.P147L	ENST00000405192	NM_001163147.1	147	cCa/cTa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98238432	98238432	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	43	493	0	ENST00000331920.6:c.1612G>T	p.Gly538Trp	p.G538W	ENST00000331920	NM_000264.3	538	Ggg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0054476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	53	372	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0054476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	262	735	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0054476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	115	397	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																																
APC	324	MSKCC	GRCh37	5	112175324	112175324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	33	250	0	ENST00000257430.4:c.4033G>T	p.Glu1345Ter	p.E1345*	ENST00000257430	NM_000038.5	1345	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0054476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	32	361	2	ENST00000256078.4:c.34_35delGGinsCT	p.Gly12Leu	p.G12L	ENST00000256078	NM_033360.2	12	GGt/CTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178943755	178943755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200671228		P-0054476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	30	227	0	ENST00000263967.3:c.2422C>T	p.Arg808Trp	p.R808W	ENST00000263967	NM_006218.2	808	Cgg/Tgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524119	187524119	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	115	631	0	ENST00000441802.2:c.11420C>A	p.Ser3807Tyr	p.S3807Y	ENST00000441802	NM_005245.3	3807	tCt/tAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187525003	187525003	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	89	596	0	ENST00000441802.2:c.10677C>A	p.Tyr3559Ter	p.Y3559*	ENST00000441802	NM_005245.3	3559	taC/taA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187527322	187527322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	156	584	0	ENST00000441802.2:c.10252C>T	p.Pro3418Ser	p.P3418S	ENST00000441802	NM_005245.3	3418	Cca/Tca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532552	187532552	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	38	318	0	ENST00000441802.2:c.9841G>C	p.Asp3281His	p.D3281H	ENST00000441802	NM_005245.3	3281	Gat/Cat																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80343488	80343488	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	53	374	0	ENST00000286548.4:c.831T>G	p.Asp277Glu	p.D277E	ENST00000286548	NM_002072.3	277	gaT/gaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0054480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	198	718	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0054480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	141	381	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																																
MTOR	2475	MSKCC	GRCh37	1	11169355	11169355	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	180	409	0	ENST00000361445.4:c.7520A>G	p.Lys2507Arg	p.K2507R	ENST00000361445	NM_004958.3	2507	aAg/aGg																																																																															
MSI1	4440	MSKCC	GRCh37	12	120805860	120805860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	351	987	2	ENST00000257552.2:c.218G>T	p.Gly73Val	p.G73V	ENST00000257552	NM_002442.3	73	gGg/gTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68857527	68857528	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	A			P-0054480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	160	387	0	ENST00000261769.5:c.2164dup	p.Ile722AsnfsTer26	p.I722Nfs*26	ENST00000261769	NM_004360.3	721	cta/ctAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593405	48593405	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	192	249	0	ENST00000342988.3:c.1156G>C	p.Gly386Arg	p.G386R	ENST00000342988	NM_005359.5	386	Ggt/Cgt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944170	71944170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	206	743	1	ENST00000298229.2:c.2003G>A	p.Arg668Gln	p.R668Q	ENST00000298229	NM_001567.3	668	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579714	7579714	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	199	629	0	ENST00000269305.4:c.82del	p.Glu28LysfsTer16	p.E28Kfs*16	ENST00000269305	NM_001126112.2	28	Gaa/aa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435576	110435576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	336	510	2	ENST00000375856.3:c.2825C>T	p.Ala942Val	p.A942V	ENST00000375856	NM_003749.2	942	gCg/gTg																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871782	35871782	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	163	544	0	ENST00000216797.5:c.724G>C	p.Asp242His	p.D242H	ENST00000216797	NM_020529.2	242	Gat/Cat																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306761	41306761	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	328	431	0	ENST00000373198.4:c.898G>C	p.Val300Leu	p.V300L	ENST00000373198	NM_133170.3	300	Gtg/Ctg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486202	8486202	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	89	360	0	ENST00000356435.5:c.2615A>C	p.Glu872Ala	p.E872A	ENST00000356435		872	gAg/gCg																																																																															
ATRX	546	MSKCC	GRCh37	X	76920206	76920206	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	119	330	0	ENST00000373344.5:c.3871T>G	p.Ser1291Ala	p.S1291A	ENST00000373344	NM_000489.3	1291	Tct/Gct																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64128701	64128701	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	178	722	0	ENST00000334205.4:c.558C>G	p.Phe186Leu	p.F186L	ENST00000334205	NM_003942.2	186	ttC/ttG																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18446931	18446931	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	68	243	0	ENST00000266497.5:c.1016C>A	p.Ser339Tyr	p.S339Y	ENST00000266497		339	tCt/tAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428642	49428642	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	160	597	0	ENST00000301067.7:c.10308G>C	p.Lys3436Asn	p.K3436N	ENST00000301067	NM_003482.3	3436	aaG/aaC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435734	49435734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	92	684	0	ENST00000301067.7:c.6149G>A	p.Arg2050Lys	p.R2050K	ENST00000301067	NM_003482.3	2050	aGa/aAa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120739	115120740	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0054488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	304	773	0	ENST00000257566.3:c.266dup	p.Leu90PhefsTer21	p.L90Ffs*21	ENST00000257566	NM_016569.3	89	cct/ccCt																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216705	7216705	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	149	431	0	ENST00000380728.2:c.718C>T	p.Gln240Ter	p.Q240*	ENST00000380728		240	Cag/Tag																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30321677	30321677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	149	430	0	ENST00000322652.5:c.1532G>A	p.Gly511Glu	p.G511E	ENST00000322652	NM_015355.2	511	gGa/gAa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130271	11130271	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	53	525	0	ENST00000344626.4:c.2510C>G	p.Ser837Cys	p.S837C	ENST00000344626	NM_003072.3	837	tCc/tGc																																																																															
BARD1	580	MSKCC	GRCh37	2	215610520	215610520	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0054488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	42	359	0	ENST00000260947.4:c.1736C>G	p.Ser579Ter	p.S579*	ENST00000260947	NM_000465.2	579	tCa/tGa																																																																															
ATR	545	MSKCC	GRCh37	3	142176576	142176576	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	70	309	0	ENST00000350721.4:c.7525G>C	p.Glu2509Gln	p.E2509Q	ENST00000350721	NM_001184.3	2509	Gaa/Caa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0054488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	113	262	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675556	30675556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	92	707	0	ENST00000376406.3:c.2800G>C	p.Glu934Gln	p.E934Q	ENST00000376406	NM_014641.2	934	Gaa/Caa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0054488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	17	423	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	213	580	0	ENST00000206249.3:c.1607T>A	p.Leu536His	p.L536H	ENST00000206249	NM_000125.3	536	cTc/cAc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	17	584	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151946996	151946996	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0054488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	44	333	0	ENST00000262189.6:c.1778C>G	p.Ser593Ter	p.S593*	ENST00000262189	NM_170606.2	593	tCa/tGa																																																																															
MED12	9968	MSKCC	GRCh37	X	70338628	70338628	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	63	735	0	ENST00000374080.3:c.24C>G	p.Ser8Arg	p.S8R	ENST00000374080		8	agC/agG																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0054492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	53	443	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
STAG2	10735	MSKCC	GRCh37	X	123185061	123185061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	95	451	0	ENST00000218089.9:c.1108C>T	p.Arg370Trp	p.R370W	ENST00000218089	NM_001042749.1	370	Cgg/Tgg																																																																															
YAP1	10413	MSKCC	GRCh37	11	102100465	102100480	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCAGAACCGTTTCC	CAGCAGAACCGTTTCC	-			P-0054497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	40	473	0	ENST00000282441.5:c.1312_1327del	p.Gln438ThrfsTer21	p.Q438Tfs*21	ENST00000282441	NM_001130145.2	437	CAGCAGAACCGTTTCCca/ca																																																																															
RECQL	5965	MSKCC	GRCh37	12	21643241	21643241	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	88	640	0	ENST00000421138.2:c.286C>G	p.Gln96Glu	p.Q96E	ENST00000421138		96	Cag/Gag																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	23	295	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65335121	65335121	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	17	658	1	ENST00000342505.4:c.520C>T	p.Arg174Ter	p.R174*	ENST00000342505	NM_002227.2	174	Cga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521541	8521541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	24	651	0	ENST00000356435.5:c.697C>T	p.Arg233Cys	p.R233C	ENST00000356435		233	Cgt/Tgt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279920	18279920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	84	965	2	ENST00000222254.8:c.2003G>A	p.Cys668Tyr	p.C668Y	ENST00000222254	NM_005027.3	668	tGc/tAc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687507	37687508	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0054503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	110	543	1	ENST00000447079.4:c.4413_4414del	p.Tyr1472SerfsTer40	p.Y1472Sfs*40	ENST00000447079	NM_015083.1	1471	CTc/c																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340408	8340408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	52	685	0	ENST00000356435.5:c.5188C>T	p.Arg1730Trp	p.R1730W	ENST00000356435		1730	Cgg/Tgg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965459	68965459	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	37	926	0	ENST00000288368.4:c.1071G>T	p.Leu357Phe	p.L357F	ENST00000288368	NM_024870.2	357	ttG/ttT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	26	399	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001374	150001376	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs753305883		P-0054516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	24	504	0	ENST00000253339.5:c.2228_2230del	p.Leu743del	p.L743del	ENST00000253339		743	cTTCga/cga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097726	27097726	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	33	561	1	ENST00000324856.7:c.3315C>A	p.Cys1105Ter	p.C1105*	ENST00000324856	NM_006015.4	1105	tgC/tgA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187527262	187527262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	47	549	0	ENST00000441802.2:c.10312C>T	p.Pro3438Ser	p.P3438S	ENST00000441802	NM_005245.3	3438	Ccc/Tcc																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458537	12458537	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140204299		P-0054519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	222	686	0	ENST00000287820.6:c.1154G>A	p.Arg385Gln	p.R385Q	ENST00000287820	NM_015869.4	385	cGa/cAa																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538909	23538909	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	244	644	0	ENST00000380871.4:c.530A>G	p.Tyr177Cys	p.Y177C	ENST00000380871	NM_006167.3	177	tAt/tGt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256520	115256520	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	157	607	0	ENST00000369535.4:c.191A>G	p.Tyr64Cys	p.Y64C	ENST00000369535	NM_002524.4	64	tAc/tGc																																																																															
ATRX	546	MSKCC	GRCh37	X	76890140	76890140	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	34	229	0	ENST00000373344.5:c.4754C>G	p.Ser1585Cys	p.S1585C	ENST00000373344	NM_000489.3	1585	tCt/tGt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041599	47041599	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	292	383	0	ENST00000329236.7:c.1590G>A	p.Trp530Ter	p.W530*	ENST00000329236	NM_001204466.1	530	tgG/tgA																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166251	118166251	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	134	301	0	ENST00000369448.3:c.761A>G	p.Asp254Gly	p.D254G	ENST00000369448	NM_017709.3	254	gAc/gGc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437573	56437574	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	79	686	0	ENST00000407977.2:c.888dup	p.Asn297Ter	p.N297*	ENST00000407977		296	-/T																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953578	32953643	+	inframe_deletion	In_Frame_Del	DEL	AAGGTTTATCAAGGGATGTCACAACCGTGTGGAAGTTGCGTATTGTAAGCTATTCAAAAAAAGAAA	AAGGTTTATCAAGGGATGTCACAACCGTGTGGAAGTTGCGTATTGTAAGCTATTCAAAAAAAGAAA	-			P-0054527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	28	519	0	ENST00000380152.3:c.8882_8947del	p.Gly2961_Lys2982del	p.G2961_K2982del	ENST00000380152		2960	cAAGGTTTATCAAGGGATGTCACAACCGTGTGGAAGTTGCGTATTGTAAGCTATTCAAAAAAAGAAAaa/caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0054528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	257	695	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	16	233	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	46	262	0	ENST00000257430.4:c.4063del	p.Ser1355LeufsTer60	p.S1355Lfs*60	ENST00000257430	NM_000038.5	1354	Ttt/tt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	178	833	0	ENST00000269305.4:c.548C>A	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tAa																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117712780	117712780	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	51	360	0	ENST00000369458.3:c.46A>C	p.Ile16Leu	p.I16L	ENST00000369458	NM_024626.3	16	Atc/Ctc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007318	143007318	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	50	391	0	ENST00000262992.4:c.2466A>C	p.Glu822Asp	p.E822D	ENST00000262992	NM_001101669.1	822	gaA/gaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	196	287	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0054529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	281	691	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502734	149502734	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	165	545	0	ENST00000261799.4:c.2054G>T	p.Arg685Leu	p.R685L	ENST00000261799	NM_002609.3	685	cGc/cTc																																																																															
AR	367	MSKCC	GRCh37	X	66942774	66942774	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	139	189	0	ENST00000374690.3:c.2555C>A	p.Ser852Tyr	p.S852Y	ENST00000374690	NM_000044.3	852	tCc/tAc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	56	892	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																															
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520017		P-0054532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	17	951	1	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577111	7577111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	112	757	0	ENST00000269305.4:c.827C>A	p.Ala276Asp	p.A276D	ENST00000269305	NM_001126112.2	276	gCc/gAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11094979	11094979	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	119	1204	0	ENST00000344626.4:c.152C>A	p.Ser51Ter	p.S51*	ENST00000344626	NM_003072.3	51	tCa/tAa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193218948	193218948	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	19	330	0	ENST00000367435.3:c.1506C>A	p.His502Gln	p.H502Q	ENST00000367435	NM_024529.4	502	caC/caA																																																																															
MGA	23269	MSKCC	GRCh37	15	42005555	42005570	+	frameshift_variant	Frame_Shift_Del	DEL	GCATTTTCAGAGGAAG	GCATTTTCAGAGGAAG	-			P-0054532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	60	531	0	ENST00000219905.7:c.3293_3308del	p.His1098LeufsTer30	p.H1098Lfs*30	ENST00000219905	NM_001164273.1	1097	aaGCATTTTCAGAGGAAG/aa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245414	41245414	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	78	702	0	ENST00000357654.3:c.2134T>G	p.Cys712Gly	p.C712G	ENST00000357654	NM_007294.3	712	Tgt/Ggt																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257150	19257150	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	65	718	0	ENST00000162023.5:c.813G>T	p.Gln271His	p.Q271H	ENST00000162023		271	caG/caT																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918622	44918622	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	72	490	1	ENST00000377967.4:c.1105C>T	p.Gln369Ter	p.Q369*	ENST00000377967	NM_021140.2	369	Cag/Tag																																																																															
MET	4233	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0054533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	201	660	0	ENST00000397752.3:c.3028+3A>G		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
BCOR	54880	MSKCC	GRCh37	X	39922136	39922136	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	207	778	0	ENST00000378444.4:c.4036C>A	p.Leu1346Met	p.L1346M	ENST00000378444	NM_001123385.1	1346	Ctg/Atg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984443	201984443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	84	614	0	ENST00000359651.3:c.1108C>T	p.Arg370Trp	p.R370W	ENST00000359651		370	Cgg/Tgg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885436	111885486	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCCACCATCCTCTCCTCCCACAGCACCTGCGCCTGTCGCTGACAGAGCGG	GCCCACCATCCTCTCCTCCCACAGCACCTGCGCCTGTCGCTGACAGAGCGG	-			P-0054533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	39	648	0	ENST00000341259.2:c.1237-23_1264del		p.X413_splice	ENST00000341259	NM_005475.2	413																																																																																
DICER1	23405	MSKCC	GRCh37	14	95590718	95590718	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	38	278	0	ENST00000343455.3:c.1191C>G	p.Ser397Arg	p.S397R	ENST00000343455	NM_177438.2	397	agC/agG																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993077	72993077	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	118	839	0	ENST00000268489.5:c.968C>G	p.Ser323Cys	p.S323C	ENST00000268489	NM_006885.3	323	tCc/tGc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437889	52437890	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0054533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	216	826	0	ENST00000460680.1:c.1271_1272del	p.Gly424GlufsTer10	p.G424Efs*10	ENST00000460680	NM_004656.3	424	gGG/g																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0054536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	34	666	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0054536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	40	404	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0054536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	22	369	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
POLE	5426	MSKCC	GRCh37	12	133263850	133263850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	8	192	0	ENST00000320574.5:c.52G>A	p.Glu18Lys	p.E18K	ENST00000320574	NM_006231.2	18	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112174262	112174262	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	12	308	0	ENST00000257430.4:c.2971G>T	p.Glu991Ter	p.E991*	ENST00000257430	NM_000038.5	991	Gaa/Taa																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41239831	41239831	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	145	547	0	ENST00000379561.5:c.519C>G	p.Ile173Met	p.I173M	ENST00000379561	NM_002015.3	173	atC/atG																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115979	8115980	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0054540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	68	373	0	ENST00000346208.3:c.1328dup	p.Ter444LeufsTer63	p.*444Lfs*63	ENST00000346208		442	atg/atGg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26101053	26101053	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	129	738	0	ENST00000435504.4:c.39G>C	p.Trp13Cys	p.W13C	ENST00000435504		13	tgG/tgC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	42	622	0	ENST00000269305.4:c.712T>A	p.Cys238Ser	p.C238S	ENST00000269305	NM_001126112.2	238	Tgt/Agt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	288	370	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0054543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	716	974	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0054543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	109	458	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	70	251	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368313	45368313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	69	346	3	ENST00000262160.6:c.1289C>T	p.Thr430Met	p.T430M	ENST00000262160	NM_005901.5	430	aCg/aTg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48028154	48028154	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	27	368	0	ENST00000234420.5:c.3032T>C	p.Ile1011Thr	p.I1011T	ENST00000234420	NM_000179.2	1011	aTt/aCt																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871012	12871040	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAGGGCAGCTTGCCCGAGTTCTACTAC	AGAAGGGCAGCTTGCCCGAGTTCTACTAC	-			P-0054554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	48	435	0	ENST00000228872.4:c.242_270del	p.Lys81ThrfsTer34	p.K81Tfs*34	ENST00000228872	NM_004064.3	80	gAGAAGGGCAGCTTGCCCGAGTTCTACTAC/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0054556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	131	830	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	214	365	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	52	242	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99149945	99149945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	135	626	1	ENST00000074304.5:c.257C>T	p.Thr86Met	p.T86M	ENST00000074304	NM_001134224.1	86	aCg/aTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	184	902	1	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112164585	112164585	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	56	197	0	ENST00000257430.4:c.1659G>A	p.Trp553Ter	p.W553*	ENST00000257430	NM_000038.5	553	tgG/tgA																																																																															
RET	5979	MSKCC	GRCh37	10	43619223	43619223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	89	786	2	ENST00000355710.3:c.2906G>A	p.Arg969Gln	p.R969Q	ENST00000355710	NM_020975.4	969	cGg/cAg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572532	64572532	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	147	1071	2	ENST00000337652.1:c.1339C>T	p.Gln447Ter	p.Q447*	ENST00000337652	NM_130803.2	447	Cag/Tag																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66520205	66520206	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-	rs1307872454		P-0054558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	197	437	0	ENST00000358598.2:c.491_492del	p.Val164AspfsTer5	p.V164Dfs*5	ENST00000358598	NM_212471.2	163	acTGtg/actg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750471	41750563	+	inframe_deletion	In_Frame_Del	DEL	CCCCAAAAGTGGTCCTTATCGGGTTATACTGGAAGCCACTGGCCTGGCTGCAGGAACTGAAGTCAGCATAGGCTGAAGCCAGGCTCGAGGTGT	CCCCAAAAGTGGTCCTTATCGGGTTATACTGGAAGCCACTGGCCTGGCTGCAGGAACTGAAGTCAGCATAGGCTGAAGCCAGGCTCGAGGTGT	-			P-0054558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	196	725	0	ENST00000226382.2:c.65_157del	p.Asp22_Gly52del	p.D22_G52del	ENST00000226382	NM_003924.3	22	gACACCTCGAGCCTGGCTTCAGCCTATGCTGACTTCAGTTCCTGCAGCCAGGCCAGTGGCTTCCAGTATAACCCGATAAGGACCACTTTTGGGGcc/gcc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3801803	3801803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	51	578	0	ENST00000262367.5:c.3703C>T	p.His1235Tyr	p.H1235Y	ENST00000262367	NM_004380.2	1235	Cat/Tat																																																																															
MGA	23269	MSKCC	GRCh37	15	41988560	41988560	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0019560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	120	712	0	ENST00000219905.7:c.1352C>G	p.Ser451Ter	p.S451*	ENST00000219905	NM_001164273.1	451	tCa/tGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	93	378	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0053969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	504	531	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0053969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	143	557	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031885	26031885	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	68	300	0	ENST00000244661.2:c.404G>C	p.Arg135Thr	p.R135T	ENST00000244661	NM_003537.3	135	aGa/aCa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0053969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	169	721	0	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7977075	7977075	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs200687206		P-0053969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	127	468	2	ENST00000319144.4:c.1655G>A	p.Gly552Asp	p.G552D	ENST00000319144	NM_001139.2	552	gGc/gAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0054130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			592	232	477	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			692	100	745	0	ENST00000269305.4:c.817C>G	p.Arg273Gly	p.R273G	ENST00000269305	NM_001126112.2	273	Cgt/Ggt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462971	120462971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			581	67	532	1	ENST00000256646.2:c.5360G>A	p.Arg1787Gln	p.R1787Q	ENST00000256646	NM_024408.3	1787	cGg/cAg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028627	12028627	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			465	37	446	0	ENST00000353533.5:c.830C>G	p.Pro277Arg	p.P277R	ENST00000353533	NM_003010.3	277	cCa/cGa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149511577	149511577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			686	72	666	0	ENST00000261799.4:c.1208C>T	p.Ala403Val	p.A403V	ENST00000261799	NM_002609.3	403	gCt/gTt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302456	15302456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	44	738	1	ENST00000263388.2:c.815C>T	p.Thr272Met	p.T272M	ENST00000263388	NM_000435.2	272	aCg/aTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260135	16260135	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	220	649	0	ENST00000375759.3:c.7400del	p.Ile2467ThrfsTer9	p.I2467Tfs*9	ENST00000375759	NM_015001.2	2467	aTc/ac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087368	27087389	+	frameshift_variant	Frame_Shift_Del	DEL	GACCTCCCCATGGGGACAGAAG	GACCTCCCCATGGGGACAGAAG	-			P-0054235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	169	522	0	ENST00000324856.7:c.1944_1965del	p.Asp648GlufsTer3	p.D648Efs*3	ENST00000324856	NM_006015.4	648	GACCTCCCCATGGGGACAGAAGga/ga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504290	8504290	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	141	500	1	ENST00000356435.5:c.1793C>A	p.Ala598Glu	p.A598E	ENST00000356435		598	gCa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0054236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	380	559	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
RB1	5925	MSKCC	GRCh37	13	48954378	48954378	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0054236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	59	272	0	ENST00000267163.4:c.1498+1G>T		p.X500_splice	ENST00000267163	NM_000321.2	500																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0054401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	74	456	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	124	989	1	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023696	27023696	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	31	482	2	ENST00000324856.7:c.802C>T	p.Gln268Ter	p.Q268*	ENST00000324856	NM_006015.4	268	Cag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81350062	81350062	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0054401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	41	384	0	ENST00000222390.5:c.1270C>A	p.Arg424Ser	p.R424S	ENST00000222390	NM_000601.4	424	Cgt/Agt																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793293	242793293	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	111	1168	1	ENST00000334409.5:c.784C>A	p.Pro262Thr	p.P262T	ENST00000334409	NM_005018.2	262	Ccc/Acc																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504995	186504995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	65	432	0	ENST00000323963.5:c.851G>A	p.Arg284His	p.R284H	ENST00000323963		284	cGc/cAc																																																																															
HGF	3082	MSKCC	GRCh37	7	81392119	81392119	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	40	382	0	ENST00000222390.5:c.158T>C	p.Ile53Thr	p.I53T	ENST00000222390	NM_000601.4	53	aTa/aCa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023655	27023655	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	28	435	0	ENST00000324856.7:c.761C>A	p.Ser254Tyr	p.S254Y	ENST00000324856	NM_006015.4	254	tCc/tAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134317	2134317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	45	1206	1	ENST00000219476.3:c.4094C>T	p.Ser1365Leu	p.S1365L	ENST00000219476	NM_000548.3	1365	tCg/tTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923459	9923459	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	75	607	0	ENST00000330684.3:c.1828G>C	p.Gly610Arg	p.G610R	ENST00000330684	NM_001134407.1	610	Ggc/Cgc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17941319	17941319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	91	796	0	ENST00000458235.1:c.3089C>T	p.Pro1030Leu	p.P1030L	ENST00000458235	NM_000215.3	1030	cCc/cTc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936064	49936064	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	127	983	0	ENST00000296474.3:c.1606T>C	p.Cys536Arg	p.C536R	ENST00000296474	NM_002447.2	536	Tgc/Cgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	47	468	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0054420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	64	405	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	102	717	0	ENST00000269305.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000269305	NM_001126112.2	273	Cgt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0033367-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			212	315	1282	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0033367-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			310	186	876	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0033367-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			88	198	316	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509109	66509109	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033367-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			67	113	669	3	ENST00000273854.3:c.218T>A	p.Leu73Gln	p.L73Q	ENST00000273854	NM_004439.5	73	cTg/cAg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658544	3658544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033367-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			765	189	1406	0	ENST00000294008.3:c.422G>A	p.Gly141Glu	p.G141E	ENST00000294008	NM_032444.2	141	gGg/gAg																																																																															
NF1	4763	MSKCC	GRCh37	17	29557345	29557345	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033367-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			301	163	652	3	ENST00000358273.4:c.3058G>T	p.Glu1020Ter	p.E1020*	ENST00000358273	NM_001042492.2	1020	Gaa/Taa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096990	11096990	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033367-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			581	367	1698	1	ENST00000344626.4:c.481G>T	p.Ala161Ser	p.A161S	ENST00000344626	NM_003072.3	161	Gcc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0052307-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	15	497	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0052307-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			978	34	657	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0052307-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			662	25	415	0	ENST00000304494.5:c.130_131dup	p.Gly45ThrfsTer9	p.G45Tfs*9	ENST00000304494	NM_000077.4	44	tac/taTAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0052766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			290	41	181	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121438948	121438948	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146855738		P-0052766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	256	712	1	ENST00000257555.6:c.1849G>A	p.Val617Ile	p.V617I	ENST00000257555		617	Gtc/Atc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0052766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			799	401	517	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0052766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			723	241	653	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
PARP1	142	MSKCC	GRCh37	1	226551684	226551684	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			858	236	464	0	ENST00000366794.5:c.2746A>G	p.Ile916Val	p.I916V	ENST00000366794	NM_001618.3	916	Ata/Gta																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288425	15288426	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0052766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			711	124	440	0	ENST00000263388.2:c.4312_4313dup	p.Asn1438LysfsTer141	p.N1438Kfs*141	ENST00000263388	NM_000435.2	1438	aac/aaAAc																																																																															
RB1	5925	MSKCC	GRCh37	13	48934154	48934155	+	stop_gained,splice_region_variant	Nonsense_Mutation	DNP	GG	GG	CT			P-0053550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	39	269	0	ENST00000267163.4:c.609_610delinsCT	p.Glu204Ter	p.E204*	ENST00000267163	NM_000321.2	203	ggGGaa/ggCTaa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829533	72829543	+	frameshift_variant	Frame_Shift_Del	DEL	GCTTCTTCTGG	GCTTCTTCTGG	-			P-0053550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	90	623	1	ENST00000268489.5:c.7038_7048del	p.Gln2347ValfsTer5	p.Q2347Vfs*5	ENST00000268489	NM_006885.3	2346	caCCAGAAGAAGCtg/catg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347224	89347224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	113	889	1	ENST00000301030.4:c.5726C>T	p.Pro1909Leu	p.P1909L	ENST00000301030	NM_001256183.1	1909	cCg/cTg																																																																															
MYC	4609	MSKCC	GRCh37	8	128752927	128752927	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0053550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	61	360	0	ENST00000377970.2:c.1088C>A	p.Ser363Ter	p.S363*	ENST00000377970	NM_002467.4	363	tCg/tAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053607-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			215	46	361	0	ENST00000342988.3:c.1255G>A	p.Gly419Arg	p.G419R	ENST00000342988	NM_005359.5	419	Ggg/Agg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515246	149515246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053607-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			602	131	722	0	ENST00000261799.4:c.236G>A	p.Gly79Asp	p.G79D	ENST00000261799	NM_002609.3	79	gGc/gAc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43714111	43714111	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053607-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			538	109	927	1	ENST00000382044.4:c.4042G>T	p.Gly1348Trp	p.G1348W	ENST00000382044	NM_001141980.1	1348	Ggg/Tgg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213920	66213920	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0053607-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	37	381	0	ENST00000273854.3:c.2510del	p.Gly837GlufsTer14	p.G837Efs*14	ENST00000273854	NM_004439.5	837	gGa/ga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163836	152163836	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053607-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			380	65	594	0	ENST00000206249.3:c.557C>A	p.Ala186Glu	p.A186E	ENST00000206249	NM_000125.3	186	gCa/gAa																																																																															
BTK	695	MSKCC	GRCh37	X	100611120	100611120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053607-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			639	87	730	0	ENST00000308731.7:c.1486C>A	p.Gln496Lys	p.Q496K	ENST00000308731	NM_000061.2	496	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0053608-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			565	90	1002	1	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0053608-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			274	162	493	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61724121	61724121	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053608-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			282	48	352	0	ENST00000401558.2:c.781C>T	p.Arg261Ter	p.R261*	ENST00000401558	NM_003400.3	261	Cga/Tga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599944	10599944	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053608-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			759	118	993	1	ENST00000171111.5:c.1632del	p.Trp544Ter	p.W544*	ENST00000171111	NM_203500.1	544	tgG/tg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431403	121431403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053608-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			617	42	876	1	ENST00000257555.6:c.607C>A	p.Arg203Ser	p.R203S	ENST00000257555		203	Cgt/Agt																																																																															
MGA	23269	MSKCC	GRCh37	15	42059150	42059150	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053608-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			359	87	534	0	ENST00000219905.7:c.8870A>T	p.Glu2957Val	p.E2957V	ENST00000219905	NM_001164273.1	2957	gAg/gTg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31374402	31374402	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053608-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			711	56	1019	0	ENST00000328111.2:c.401A>C	p.Asp134Ala	p.D134A	ENST00000328111	NM_006892.3	134	gAc/gCc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513026	106513026	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053608-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			267	52	368	1	ENST00000359195.3:c.2040T>G	p.Phe680Leu	p.F680L	ENST00000359195	NM_002649.2	680	ttT/ttG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0053629-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	83	365	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933118	39933118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053629-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			984	213	591	0	ENST00000378444.4:c.1481G>T	p.Cys494Phe	p.C494F	ENST00000378444	NM_001123385.1	494	tGt/tTt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061053	38061054	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0053629-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			507	103	314	0	ENST00000250448.2:c.934_935dup	p.His314CysfsTer8	p.H314Cfs*8	ENST00000250448	NM_004496.3	312	ggt/ggGGt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742821	145742824	+	frameshift_variant	Frame_Shift_Del	DEL	ACTC	ACTC	-			P-0053629-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			523	118	271	0	ENST00000428558.2:c.187_190del	p.Glu63ArgfsTer19	p.E63Rfs*19	ENST00000428558	NM_004260.3	63	GAGTcg/cg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061087	38061190	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGCGCCAGAGGGGTCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTT	GAGGCGCCAGAGGGGTCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTT	-			P-0053795-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			151	229	214	0	ENST00000250448.2:c.799_902del	p.Lys267Ter	p.K267*	ENST00000250448	NM_004496.3	267	AAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGCGGCCCTGAGAGCCGCAAGGACCCCTCTGGCGCCTCt/t																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061111	38061124	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTCAGGGCCGCC	CTCTCAGGGCCGCC	-			P-0053795-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			296	87	172	0	ENST00000250448.2:c.865_878del	p.Gly289ProfsTer9	p.G289Pfs*9	ENST00000250448	NM_004496.3	289	GGCGGCCCTGAGAGc/c																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18491411	18491411	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053795-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			410	46	407	0	ENST00000266497.5:c.1324G>C	p.Gly442Arg	p.G442R	ENST00000266497		442	Ggg/Cgg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061202	38061202	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053795-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			422	241	476	0	ENST00000250448.2:c.787del	p.Gln263ArgfsTer58	p.Q263Rfs*58	ENST00000250448	NM_004496.3	263	Cag/ag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0054121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			165	103	271	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0054121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			228	128	320	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056500	26056500	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			244	50	299	0	ENST00000343677.2:c.157G>C	p.Glu53Gln	p.E53Q	ENST00000343677	NM_005319.3	53	Gag/Cag																																																																															
ARAF	369	MSKCC	GRCh37	X	47430770	47430770	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			511	119	620	1	ENST00000377045.4:c.1735C>T	p.Arg579Trp	p.R579W	ENST00000377045	NM_001654.4	579	Cgg/Tgg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355242	15355242	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			293	59	541	0	ENST00000263377.2:c.2381A>G	p.Lys794Arg	p.K794R	ENST00000263377	NM_058243.2	794	aAg/aGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938879	178938879	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			69	38	115	0	ENST00000263967.3:c.2121G>C	p.Glu707Asp	p.E707D	ENST00000263967	NM_006218.2	707	gaG/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0054263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1217	63	322	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
MGA	23269	MSKCC	GRCh37	15	42052641	42052641	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	41	198	0	ENST00000219905.7:c.7312G>T	p.Glu2438Ter	p.E2438*	ENST00000219905	NM_001164273.1	2438	Gaa/Taa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627877	37627877	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	57	232	0	ENST00000447079.4:c.1792C>G	p.Gln598Glu	p.Q598E	ENST00000447079	NM_015083.1	598	Cag/Gag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36209242	36209242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	63	188	0	ENST00000222270.7:c.322G>A	p.Val108Met	p.V108M	ENST00000222270	NM_014727.1	108	Gtg/Atg																																																																															
TP63	8626	MSKCC	GRCh37	3	189584584	189584584	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0054263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	23	133	0	ENST00000264731.3:c.880C>T	p.Gln294Ter	p.Q294*	ENST00000264731	NM_003722.4	294	Cag/Tag																																																																															
ALK	238	MSKCC	GRCh37	2	29446318	29446357	+	protein_altering_variant	In_Frame_Del	DEL	GAGCTTGCTCAGCTTGTACTCAGGGCTCTGCAGCTCCATC	GAGCTTGCTCAGCTTGTACTCAGGGCTCTGCAGCTCCATC	T			P-0054264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	280	863	0	ENST00000389048.3:c.3210_3249delinsA	p.Met1071_Leu1083del	p.M1071_L1083del	ENST00000389048	NM_004304.4	1070	caGATGGAGCTGCAGAGCCCTGAGTACAAGCTGAGCAAGCTC/caA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	17	356	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0054269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	14	347	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578196	7578196	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	28	687	0	ENST00000269305.4:c.653T>A	p.Val218Glu	p.V218E	ENST00000269305	NM_001126112.2	218	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0054273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	45	670	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	14	329	0	ENST00000397062.3:c.101G>C	p.Arg34Pro	p.R34P	ENST00000397062	NM_006164.4	34	cGa/cCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	67	764	0	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786705	3786705	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	21	796	0	ENST00000262367.5:c.4506G>C	p.Trp1502Cys	p.W1502C	ENST00000262367	NM_004380.2	1502	tgG/tgC																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201737	66201737	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	60	469	0	ENST00000273854.3:c.2765G>T	p.Arg922Met	p.R922M	ENST00000273854	NM_004439.5	922	aGg/aTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462059	120462059	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	25	806	0	ENST00000256646.2:c.5657G>C	p.Arg1886Pro	p.R1886P	ENST00000256646	NM_024408.3	1886	cGc/cCc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7976489	7976489	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	82	736	0	ENST00000319144.4:c.1903del	p.Leu635SerfsTer28	p.L635Sfs*28	ENST00000319144	NM_001139.2	635	Ctc/tc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86679558	86679558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	19	408	0	ENST00000274376.6:c.2719C>T	p.Pro907Ser	p.P907S	ENST00000274376	NM_002890.2	907	Cct/Tct																																																																															
APC	324	MSKCC	GRCh37	5	112178834	112178834	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	13	349	0	ENST00000257430.4:c.7543A>G	p.Ile2515Val	p.I2515V	ENST00000257430	NM_000038.5	2515	Ata/Gta																																																																															
MED12	9968	MSKCC	GRCh37	X	70354253	70354253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	43	969	1	ENST00000374080.3:c.4664C>A	p.Thr1555Lys	p.T1555K	ENST00000374080		1555	aCg/aAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76874392	76874392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	17	504	0	ENST00000373344.5:c.5330G>A	p.Arg1777Lys	p.R1777K	ENST00000373344	NM_000489.3	1777	aGg/aAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76949316	76949316	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	13	353	0	ENST00000373344.5:c.481G>C	p.Gly161Arg	p.G161R	ENST00000373344	NM_000489.3	161	Gga/Cga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0054276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	6	464	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	392	758	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
MED12	9968	MSKCC	GRCh37	X	70347783	70347783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	139	543	0	ENST00000374080.3:c.3022G>T	p.Val1008Leu	p.V1008L	ENST00000374080		1008	Gtg/Ttg																																																																															
CBL	867	MSKCC	GRCh37	11	119167698	119167698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	136	549	0	ENST00000264033.4:c.2107C>T	p.Pro703Ser	p.P703S	ENST00000264033	NM_005188.3	703	Ccc/Tcc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106524645	106524645	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	170	268	0	ENST00000359195.3:c.2806T>A	p.Cys936Ser	p.C936S	ENST00000359195	NM_002649.2	936	Tgt/Agt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206648245	206648256	+	inframe_deletion	In_Frame_Del	DEL	GCTCCAGTGGGA	GCTCCAGTGGGA	-			P-0054289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	709	605	0	ENST00000367120.3:c.268_279del	p.Ser90_Ser93del	p.S90_S93del	ENST00000367120	NM_014002.3	89	tGCTCCAGTGGGAgc/tgc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332507	70332507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	247	565	0	ENST00000373644.4:c.412C>T	p.His138Tyr	p.H138Y	ENST00000373644	NM_030625.2	138	Cat/Tat																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588819	69588819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	312	1133	0	ENST00000168712.1:c.417G>A	p.Met139Ile	p.M139I	ENST00000168712	NM_002007.2	139	atG/atA																																																																															
SESN3	143686	MSKCC	GRCh37	11	94963975	94963975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	152	424	0	ENST00000536441.1:c.50G>T	p.Cys17Phe	p.C17F	ENST00000536441	NM_144665.3	17	tGt/tTt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023366	31023366	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	122	485	0	ENST00000375687.4:c.2851G>T	p.Asp951Tyr	p.D951Y	ENST00000375687	NM_015338.5	951	Gat/Tat																																																																															
SMO	6608	MSKCC	GRCh37	7	128829095	128829095	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	63	56	0	ENST00000249373.3:c.103A>T	p.Asn35Tyr	p.N35Y	ENST00000249373	NM_005631.4	35	Aac/Tac																																																																															
RAD21	5885	MSKCC	GRCh37	8	117861241	117861241	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	119	460	0	ENST00000297338.2:c.1648G>T	p.Asp550Tyr	p.D550Y	ENST00000297338	NM_006265.2	550	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0054291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	289	834	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174113	112174113	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	146	285	0	ENST00000257430.4:c.2825del	p.Asn942IlefsTer13	p.N942Ifs*13	ENST00000257430	NM_000038.5	941	gAa/ga																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226253365	226253365	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	159	336	0	ENST00000366813.1:c.137C>G	p.Thr46Ser	p.T46S	ENST00000366813		46	aCt/aGt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945439	17945439	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149982493		P-0054291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	279	816	0	ENST00000458235.1:c.2291C>T	p.Pro764Leu	p.P764L	ENST00000458235	NM_000215.3	764	cCg/cTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15284996	15284996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	448	1153	1	ENST00000263388.2:c.4619G>A	p.Arg1540His	p.R1540H	ENST00000263388	NM_000435.2	1540	cGc/cAc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061214	38061231	+	inframe_deletion	In_Frame_Del	DEL	AGCAGCCGTTCTCGAACA	AGCAGCCGTTCTCGAACA	-			P-0054388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	301	625	0	ENST00000250448.2:c.758_775del	p.Met253_Tyr259delinsAsn	p.M253_Y259delinsN	ENST00000250448	NM_004496.3	253	aTGTTCGAGAACGGCTGCTac/aac																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618493	37618494	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0054388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	331	757	0	ENST00000447079.4:c.174dup	p.Glu59ArgfsTer16	p.E59Rfs*16	ENST00000447079	NM_015083.1	57	acc/aCcc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619264	37619265	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	299	775	0	ENST00000447079.4:c.943dup	p.Arg315LysfsTer36	p.R315Kfs*36	ENST00000447079	NM_015083.1	314	gaa/gAaa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686461	37687087	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACCACAGCATGTATATTGTTCCCTCTCATCTTCCTTCCTTCTGCTTTGTTTTAATGTTTCCATCTAACAGCAAAAAGGGGCAGGGAGTCTGCCAACAGCCTGCATGTTAGAACAGTTCTTTAAAGGAAGGAAATGGAGGAAATCTTAGACCAAAATCAGGATAATCATTTGAAACATATGATATTTTTACACTAGCTGTTAGATCCAGGATGCAACTGTTTTACTTTTAATCACTTGATTTATTTATAATTGCAATTTTCTGATCCCAAGATTTTATTCTTTATATATCTGGTTACTTATATTGATATTTGTTTATGTTGCACAGTGTGTGTGTTTGTGTTTATAATCACATGTGCTTTTTAAGATGGTGTTTAAAAGAAGTAACCCTTCCACAGCATGTCCTCCTCACATTCTTCCACCAGAGAAGAGGCCCCCTGAGCCCCCCGGACCTCCACCGCCGCCACCTCCACCCCCTCTGGTTGAAGGCGATCTTTCCAGCGCCCCCCAGGAGTTGAACCCAGCCGTGACAGCCGCCTTGCTGCAACTTTTATCCCAGCCTGAAGCAGAGCCTCCTGGCCACCTGCCACATGAGCACCAGGCCTTGAGACCAATGGAGTACTCCACCC	GACCACAGCATGTATATTGTTCCCTCTCATCTTCCTTCCTTCTGCTTTGTTTTAATGTTTCCATCTAACAGCAAAAAGGGGCAGGGAGTCTGCCAACAGCCTGCATGTTAGAACAGTTCTTTAAAGGAAGGAAATGGAGGAAATCTTAGACCAAAATCAGGATAATCATTTGAAACATATGATATTTTTACACTAGCTGTTAGATCCAGGATGCAACTGTTTTACTTTTAATCACTTGATTTATTTATAATTGCAATTTTCTGATCCCAAGATTTTATTCTTTATATATCTGGTTACTTATATTGATATTTGTTTATGTTGCACAGTGTGTGTGTTTGTGTTTATAATCACATGTGCTTTTTAAGATGGTGTTTAAAAGAAGTAACCCTTCCACAGCATGTCCTCCTCACATTCTTCCACCAGAGAAGAGGCCCCCTGAGCCCCCCGGACCTCCACCGCCGCCACCTCCACCCCCTCTGGTTGAAGGCGATCTTTCCAGCGCCCCCCAGGAGTTGAACCCAGCCGTGACAGCCGCCTTGCTGCAACTTTTATCCCAGCCTGAAGCAGAGCCTCCTGGCCACCTGCCACATGAGCACCAGGCCTTGAGACCAATGGAGTACTCCACCC	-			P-0054388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	140	5	0	ENST00000447079.4:c.3761-392_3995del		p.X1254_splice	ENST00000447079	NM_015083.1	1254																																																																																
TNFAIP3	7128	MSKCC	GRCh37	6	138199711	138199711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	300	705	0	ENST00000237289.4:c.1129G>A	p.Val377Met	p.V377M	ENST00000237289	NM_001270507.1	377	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	27	468	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	61	772	0	ENST00000269305.4:c.808T>G	p.Phe270Val	p.F270V	ENST00000269305	NM_001126112.2	270	Ttt/Gtt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0054394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	34	440	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1279527	1279527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	59	1300	1	ENST00000310581.5:c.2009C>T	p.Ala670Val	p.A670V	ENST00000310581	NM_198253.2	670	gCg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218851	36218851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	36	1176	1	ENST00000222270.7:c.4462C>T	p.Arg1488Trp	p.R1488W	ENST00000222270	NM_014727.1	1488	Cgg/Tgg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426115	47426115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	48	1044	0	ENST00000377045.4:c.635C>A	p.Ser212Tyr	p.S212Y	ENST00000377045	NM_001654.4	212	tCc/tAc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372417	55372417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	219	1183	0	ENST00000297316.4:c.1107C>A	p.Phe369Leu	p.F369L	ENST00000297316	NM_022454.3	369	ttC/ttA																																																																															
JAK1	3716	MSKCC	GRCh37	1	65301087	65301087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	39	287	0	ENST00000342505.4:c.3361C>T	p.Pro1121Ser	p.P1121S	ENST00000342505	NM_002227.2	1121	Cca/Tca																																																																															
RET	5979	MSKCC	GRCh37	10	43615182	43615182	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	43	1016	0	ENST00000355710.3:c.2596G>T	p.Ala866Ser	p.A866S	ENST00000355710	NM_020975.4	866	Gcc/Tcc																																																																															
ATM	472	MSKCC	GRCh37	11	108216576	108216576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	35	386	0	ENST00000278616.4:c.8525C>T	p.Pro2842Leu	p.P2842L	ENST00000278616	NM_000051.3	2842	cCa/cTa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15975460	15975460	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0054394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	38	506	0	ENST00000268712.3:c.3894G>T	p.Gln1298His	p.Q1298H	ENST00000268712	NM_006311.3	1298	caG/caT																																																																															
ESR1	2099	MSKCC	GRCh37	6	152201870	152201870	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	46	480	0	ENST00000206249.3:c.724C>G	p.Leu242Val	p.L242V	ENST00000206249	NM_000125.3	242	Ctc/Gtc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729590	41729590	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	78	814	0	ENST00000242208.4:c.939G>T	p.Glu313Asp	p.E313D	ENST00000242208	NM_002192.2	313	gaG/gaT																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981733	70981733	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	175	1095	2	ENST00000276594.2:c.363C>A	p.Tyr121Ter	p.Y121*	ENST00000276594	NM_024504.3	121	taC/taA																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040794	47040794	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	54	1074	0	ENST00000329236.7:c.1195G>T	p.Gly399Ter	p.G399*	ENST00000329236	NM_001204466.1	399	Gga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432443	49432443	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	44	971	0	ENST00000301067.7:c.8696G>T	p.Gly2899Val	p.G2899V	ENST00000301067	NM_003482.3	2899	gGc/gTc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533086	63533086	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	46	914	0	ENST00000307078.5:c.1808C>G	p.Ala603Gly	p.A603G	ENST00000307078	NM_004655.3	603	gCt/gGt																																																																															
ERF	2077	MSKCC	GRCh37	19	42753719	42753719	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	53	1175	0	ENST00000222329.4:c.545del	p.Gly182AlafsTer89	p.G182Afs*89	ENST00000222329	NM_006494.2	182	gGc/gc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912104	50912104	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	55	1090	0	ENST00000440232.2:c.1838C>G	p.Ala613Gly	p.A613G	ENST00000440232	NM_002691.3	613	gCc/gGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	45	502	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581229	48581229	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	47	619	0	ENST00000342988.3:c.533C>A	p.Ser178Ter	p.S178*	ENST00000342988	NM_005359.5	178	tCa/tAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911593	114911593	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	47	621	0	ENST00000543371.1:c.1111G>T	p.Glu371Ter	p.E371*	ENST00000543371	NM_001198531.1	371	Gag/Tag																																																																															
ETV6	2120	MSKCC	GRCh37	12	11905432	11905432	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34966596		P-0054417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	94	564	0	ENST00000396373.4:c.82G>A	p.Ala28Thr	p.A28T	ENST00000396373	NM_001987.4	28	Gct/Act																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244146	153244146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	73	609	0	ENST00000281708.4:c.2011G>T	p.Val671Phe	p.V671F	ENST00000281708	NM_033632.3	671	Gtt/Ttt																																																																															
APC	324	MSKCC	GRCh37	5	112137071	112137071	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	68	473	0	ENST00000257430.4:c.825del	p.Asn276MetfsTer17	p.N276Mfs*17	ENST00000257430	NM_000038.5	275	ggT/gg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5123048	5123048	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	14	548	0	ENST00000381652.3:c.3104C>A	p.Ser1035Ter	p.S1035*	ENST00000381652	NM_004972.3	1035	tCa/tAa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779745	3779745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	301	545	0	ENST00000262367.5:c.5303G>A	p.Arg1768His	p.R1768H	ENST00000262367	NM_004380.2	1768	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492847	56492848	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0054445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	132	383	0	ENST00000407977.2:c.91dup	p.Val31GlyfsTer9	p.V31Gfs*9	ENST00000407977		31	gta/gGta																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31472177	31472177	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	254	566	0	ENST00000344624.3:c.2234C>G	p.Pro745Arg	p.P745R	ENST00000344624		745	cCt/cGt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67569785	67569785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	95	312	0	ENST00000274335.5:c.446T>C	p.Leu149Pro	p.L149P	ENST00000274335		149	cTa/cCa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670948	30670948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	11	640	1	ENST00000376406.3:c.5798G>A	p.Arg1933Gln	p.R1933Q	ENST00000376406	NM_014641.2	1933	cGg/cAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16012149	16012149	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	27	575	0	ENST00000268712.3:c.2133T>G	p.Asp711Glu	p.D711E	ENST00000268712	NM_006311.3	711	gaT/gaG																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226257	2226257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	10	725	2	ENST00000398665.3:c.3737C>T	p.Ser1246Leu	p.S1246L	ENST00000398665	NM_032482.2	1246	tCg/tTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663172	227663172	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	51	625	0	ENST00000305123.5:c.283A>G	p.Ile95Val	p.I95V	ENST00000305123	NM_005544.2	95	Atc/Gtc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0054458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	177	562	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577525	7577527	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0054458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	256	550	0	ENST00000269305.4:c.754_756del	p.Leu252del	p.L252del	ENST00000269305	NM_001126112.2	252	CTC/-																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11114071	11114071	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0054458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	31	443	0	ENST00000344626.4:c.1999G>T	p.Glu667Ter	p.E667*	ENST00000344626	NM_003072.3	667	Gag/Tag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276312	15276312	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	110	723	0	ENST00000263388.2:c.5682C>A	p.Asn1894Lys	p.N1894K	ENST00000263388	NM_000435.2	1894	aaC/aaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	172	390	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169935	32169935	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142477287		P-0054459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	389	816	3	ENST00000375023.3:c.3673C>T	p.Arg1225Trp	p.R1225W	ENST00000375023	NM_004557.3	1225	Cgg/Tgg																																																																															
NF2	4771	MSKCC	GRCh37	22	30064376	30064376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	205	462	0	ENST00000338641.4:c.940G>A	p.Asp314Asn	p.D314N	ENST00000338641	NM_000268.3	314	Gat/Aat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435717	49435717	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	308	810	0	ENST00000301067.7:c.6166G>C	p.Asp2056His	p.D2056H	ENST00000301067	NM_003482.3	2056	Gac/Cac																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81965146	81965146	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	163	664	0	ENST00000359376.3:c.2626C>G	p.Leu876Val	p.L876V	ENST00000359376	NM_002661.3	876	Ctg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579445	7579473	+	frameshift_variant	Frame_Shift_Del	DEL	GTAGGAGCTGCTGGTGCAGGGGCCACGGG	GTAGGAGCTGCTGGTGCAGGGGCCACGGG	ACCAGC			P-0054225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	940	995	0	ENST00000269305.4:c.214_242delinsGCTGGT	p.Pro72AlafsTer69	p.P72Afs*69	ENST00000269305	NM_001126112.2	72	CCCGTGGCCCCTGCACCAGCAGCTCCTACa/GCTGGTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0049350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	477	3618	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0049350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	684	138	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
NF1	4763	MSKCC	GRCh37	17	29679366	29679366	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs866445127		P-0049350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	396	118	0	ENST00000358273.4:c.7549C>T	p.Arg2517Ter	p.R2517*	ENST00000358273	NM_001042492.2	2517	Cga/Tga																																																																															
PIM1	5292	MSKCC	GRCh37	6	37138639	37138639	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	593	47	0	ENST00000373509.5:c.173T>C	p.Val58Ala	p.V58A	ENST00000373509	NM_002648.3	58	gTc/gCc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039638	47039638	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	535	111	4	ENST00000329236.7:c.856C>T	p.Gln286Ter	p.Q286*	ENST00000329236	NM_001204466.1	286	Cag/Tag																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156837960	156837960	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	749	80	0	ENST00000524377.1:c.493G>T	p.Glu165Ter	p.E165*	ENST00000524377	NM_002529.3	165	Gag/Tag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118380712	118380712	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	346	53	0	ENST00000534358.1:c.10950G>T	p.Met3650Ile	p.M3650I	ENST00000534358	NM_005933.3	3650	atG/atT																																																																															
POLD1	5424	MSKCC	GRCh37	19	50920347	50920350	+	frameshift_variant	Frame_Shift_Del	DEL	AGAA	AGAA	-			P-0049350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	713	72	0	ENST00000440232.2:c.3113_3116del	p.Gln1038ArgfsTer6	p.Q1038Rfs*6	ENST00000440232	NM_002691.3	1038	cAGAAg/cg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498443	89498443	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	262	63	0	ENST00000336596.2:c.2415C>G	p.Ser805Arg	p.S805R	ENST00000336596	NM_005233.5	805	agC/agG																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38966781	38966781	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	237	27	0	ENST00000357387.3:c.1261G>C	p.Val421Leu	p.V421L	ENST00000357387	NM_152756.3	421	Gtt/Ctt																																																																															
FANCC	2176	MSKCC	GRCh37	9	97912308	97912308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	372	104	0	ENST00000289081.3:c.583G>T	p.Asp195Tyr	p.D195Y	ENST00000289081	NM_000136.2	195	Gat/Tat																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061248	38061248	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	1018	55	0	ENST00000250448.2:c.741C>G	p.His247Gln	p.H247Q	ENST00000250448	NM_004496.3	247	caC/caG																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607436	46607436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	1019	405	2	ENST00000263734.3:c.1625T>C	p.Leu542Pro	p.L542P	ENST00000263734	NM_001430.4	542	cTa/cCa																																																																															
E2F3	1871	MSKCC	GRCh37	6	20488381	20488381	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	514	72	0	ENST00000346618.3:c.1037T>C	p.Ile346Thr	p.I346T	ENST00000346618	NM_001949.4	346	aTt/aCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0054062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	722	223	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0054062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	273	74	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0054062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	350	110	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770564	40770564	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	470	55	0	ENST00000373198.4:c.2818A>G	p.Ile940Val	p.I940V	ENST00000373198	NM_133170.3	940	Atc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0054113-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			423	1010	100	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023253	27023271	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCCGGCGGCGGCGGTGG	CGCCCGGCGGCGGCGGTGG	-			P-0054113-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			203	382	59	0	ENST00000324856.7:c.361_379del	p.Pro121AlafsTer105	p.P121Afs*105	ENST00000324856	NM_006015.4	120	cCGCCCGGCGGCGGCGGTGGc/cc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38954938	38954938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054113-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			231	317	55	0	ENST00000357387.3:c.2635C>T	p.Pro879Ser	p.P879S	ENST00000357387	NM_152756.3	879	Cct/Tct																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177012	56177022	+	frameshift_variant	Frame_Shift_Del	DEL	TAGATAGACTG	TAGATAGACTG	-			P-0054113-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			214	438	37	0	ENST00000399503.3:c.2283_2293del	p.Asp762ValfsTer6	p.D762Vfs*6	ENST00000399503	NM_005921.1	761	aTAGATAGACTG/a																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940146	71940147	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTGAGCACCGTCTCGCACGACTACCT			P-0054113-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			437	1023	81	0	ENST00000298229.2:c.532_557dup	p.Lys187Ter	p.K187*	ENST00000298229	NM_001567.3	177	-/CTGAGCACCGTCTCGCACGACTACCT																																																																															
AXL	558	MSKCC	GRCh37	19	41745117	41745117	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054113-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			473	1030	102	0	ENST00000301178.4:c.1183G>C	p.Gly395Arg	p.G395R	ENST00000301178	NM_021913.4	395	Ggg/Cgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0054115-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			609	1582	901	1	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969370	44969371	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054115-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			276	664	324	2	ENST00000377967.4:c.4055dup	p.Thr1353AspfsTer36	p.T1353Dfs*36	ENST00000377967	NM_021140.2	1351	cga/cgAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710582	114710596	+	inframe_deletion	In_Frame_Del	DEL	GACGAGGGCGAACAG	GACGAGGGCGAACAG	-			P-0054115-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			509	715	144	0	ENST00000543371.1:c.69_83del	p.Asp23_Gln27del	p.D23_Q27del	ENST00000543371	NM_001198531.1	23	GACGAGGGCGAACAG/-																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445979	49445979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054115-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1703	1752	189	0	ENST00000301067.7:c.1487C>T	p.Pro496Leu	p.P496L	ENST00000301067	NM_003482.3	496	cCg/cTg																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197353	26197353	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054115-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1230	1005	79	0	ENST00000356476.2:c.126C>A	p.Tyr42Ter	p.Y42*	ENST00000356476		42	taC/taA																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3828172	3828173	+	missense_variant	Missense_Mutation	DNP	AT	AT	GA			P-0054115-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			582	465	58	0	ENST00000262367.5:c.1952_1953delinsTC	p.Tyr651Phe	p.Y651F	ENST00000262367	NM_004380.2	651	tAT/tTC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0054234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	403	371	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132426	11132426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	1061	304	0	ENST00000344626.4:c.2642A>G	p.Asp881Gly	p.D881G	ENST00000344626	NM_003072.3	881	gAc/gGc																																																																															
MED12	9968	MSKCC	GRCh37	X	70356285	70356285	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	865	562	0	ENST00000374080.3:c.5180A>T	p.His1727Leu	p.H1727L	ENST00000374080		1727	cAc/cTc																																																																															
MET	4233	MSKCC	GRCh37	7	116418871	116418871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	313	67	0	ENST00000397752.3:c.3382G>A	p.Gly1128Arg	p.G1128R	ENST00000397752	NM_000245.2	1128	Gga/Aga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5206850	5206850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	707	168	0	ENST00000357368.4:c.5782G>A	p.Glu1928Lys	p.E1928K	ENST00000357368	NM_002850.3	1928	Gag/Aag																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58711223	58711223	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	440	122	0	ENST00000305921.3:c.711C>G	p.Asn237Lys	p.N237K	ENST00000305921	NM_003620.3	237	aaC/aaG																																																																															
RAD50	10111	MSKCC	GRCh37	5	131939085	131939297	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CATAGAAGAACAAGAAACACTCTTGGGTACAATAATGCCTGAAGAAGAAAGTGCCAAAGTATGCCTGACAGATGTTACAATTATGGAGAGGTTCCAGGTAAGTTTATTGTAGTTTAAGGCAGAATAAAACTTGTTCCATGGTGGCTTGAATTTGAAGTGTGAGAGTTAAAAATAGTAGCTAGTATTCAGGTACAGGTTGTGTTTAGAATTCCC	CATAGAAGAACAAGAAACACTCTTGGGTACAATAATGCCTGAAGAAGAAAGTGCCAAAGTATGCCTGACAGATGTTACAATTATGGAGAGGTTCCAGGTAAGTTTATTGTAGTTTAAGGCAGAATAAAACTTGTTCCATGGTGGCTTGAATTTGAAGTGTGAGAGTTAAAAATAGTAGCTAGTATTCAGGTACAGGTTGTGTTTAGAATTCCC	-			P-0054292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	375	40	0	ENST00000265335.6:c.2304_2397+119del		p.X768_splice	ENST00000265335		768																																																																																
B2M	567	MSKCC	GRCh37	15	45007635	45007635	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	188	31	0	ENST00000558401.1:c.82C>T	p.Gln28Ter	p.Q28*	ENST00000558401	NM_004048.2	28	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	314	285	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220640	1220640	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	816	23	0	ENST00000326873.7:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000326873	NM_000455.4	220	Cag/Tag																																																																															
ALK	238	MSKCC	GRCh37	2	29451792	29451792	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	331	43	0	ENST00000389048.3:c.2773G>T	p.Gly925Ter	p.G925*	ENST00000389048	NM_004304.4	925	Gga/Tga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602332	10602332	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	969	184	0	ENST00000171111.5:c.1246A>T	p.Ile416Phe	p.I416F	ENST00000171111	NM_203500.1	416	Atc/Ttc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604745	48604745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	334	108	0	ENST00000342988.3:c.1567T>C	p.Cys523Arg	p.C523R	ENST00000342988	NM_005359.5	523	Tgc/Cgc																																																																															
NPM1	4869	MSKCC	GRCh37	5	170818336	170818336	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	397	80	0	ENST00000296930.5:c.166G>C	p.Glu56Gln	p.E56Q	ENST00000296930	NM_002520.6	56	Gag/Cag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779313	3779313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	642	68	0	ENST00000262367.5:c.5735C>T	p.Ser1912Leu	p.S1912L	ENST00000262367	NM_004380.2	1912	tCa/tTa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459846	149459846	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	793	167	1	ENST00000286301.3:c.361C>A	p.Gln121Lys	p.Q121K	ENST00000286301	NM_005211.3	121	Cag/Aag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670777	134670777	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	457	79	0	ENST00000398015.3:c.688G>T	p.Glu230Ter	p.E230*	ENST00000398015	NM_004441.4	230	Gag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261682	16261682	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	480	77	0	ENST00000375759.3:c.8947A>G	p.Thr2983Ala	p.T2983A	ENST00000375759	NM_015001.2	2983	Acg/Gcg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120510115	120510115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	334	80	0	ENST00000256646.2:c.1394G>T	p.Cys465Phe	p.C465F	ENST00000256646	NM_024408.3	465	tGc/tTc																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518074	69518074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	741	143	0	ENST00000294312.3:c.291C>A	p.Ser97Arg	p.S97R	ENST00000294312	NM_005117.2	97	agC/agA																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641540	18641540	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	265	161	1	ENST00000266497.5:c.2539T>A	p.Ser847Thr	p.S847T	ENST00000266497		847	Tct/Act																																																																															
POLE	5426	MSKCC	GRCh37	12	133225988	133225988	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	763	311	0	ENST00000320574.5:c.3909G>T	p.Arg1303Ser	p.R1303S	ENST00000320574	NM_006231.2	1303	agG/agT																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954239	32954239	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	375	135	0	ENST00000380152.3:c.9213G>T	p.Glu3071Asp	p.E3071D	ENST00000380152		3071	gaG/gaT																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641053	23641053	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	576	165	0	ENST00000261584.4:c.2422G>T	p.Gly808Ter	p.G808*	ENST00000261584	NM_024675.3	808	Gga/Tga																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645319	67645319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	468	61	0	ENST00000264010.4:c.584C>T	p.Pro195Leu	p.P195L	ENST00000264010	NM_006565.3	195	cCa/cTa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350272	89350272	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	739	152	2	ENST00000301030.4:c.2678G>T	p.Arg893Leu	p.R893L	ENST00000301030	NM_001256183.1	893	cGg/cTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16056694	16056694	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	211	78	0	ENST00000268712.3:c.748G>T	p.Ala250Ser	p.A250S	ENST00000268712	NM_006311.3	250	Gct/Tct																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627478	37627478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	346	109	0	ENST00000447079.4:c.1393G>A	p.Val465Ile	p.V465I	ENST00000447079	NM_015083.1	465	Gta/Ata																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40441440	40441440	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	476	109	1	ENST00000345506.4:c.11G>T	p.Trp4Leu	p.W4L	ENST00000345506	NM_003152.3	4	tGg/tTg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740896	58740896	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	297	74	0	ENST00000305921.3:c.1801A>G	p.Thr601Ala	p.T601A	ENST00000305921	NM_003620.3	601	Act/Gct																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212442	5212442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	783	143	0	ENST00000357368.4:c.4675G>T	p.Gly1559Cys	p.G1559C	ENST00000357368	NM_002850.3	1559	Ggc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5218497	5218497	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	670	168	1	ENST00000357368.4:c.3982G>T	p.Ala1328Ser	p.A1328S	ENST00000357368	NM_002850.3	1328	Gcc/Tcc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469612	25469612	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	675	158	0	ENST00000264709.3:c.1156G>T	p.Val386Leu	p.V386L	ENST00000264709	NM_175629.2	386	Gtg/Ttg																																																																															
ALK	238	MSKCC	GRCh37	2	29455169	29455169	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	518	118	0	ENST00000389048.3:c.2632+1G>A		p.X878_splice	ENST00000389048	NM_004304.4	878																																																																																
SOS1	6654	MSKCC	GRCh37	2	39278331	39278331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	486	169	1	ENST00000402219.2:c.818G>T	p.Gly273Val	p.G273V	ENST00000402219	NM_005633.3	273	gGc/gTc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99172137	99172137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	578	129	0	ENST00000074304.5:c.1703G>T	p.Ser568Ile	p.S568I	ENST00000074304	NM_001134224.1	568	aGc/aTc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158595032	158595032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	343	92	0	ENST00000263640.3:c.1315C>T	p.Pro439Ser	p.P439S	ENST00000263640	NM_001105.4	439	Cca/Tca																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736104	204736104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	260	42	0	ENST00000302823.3:c.461C>T	p.Pro154Leu	p.P154L	ENST00000302823	NM_005214.4	154	cCa/cTa																																																																															
CUL3	8452	MSKCC	GRCh37	2	225342916	225342916	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	277	76	0	ENST00000264414.4:c.2175+1G>T		p.X725_splice	ENST00000264414	NM_003590.4	725																																																																																
IRS1	3667	MSKCC	GRCh37	2	227660310	227660310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	505	104	0	ENST00000305123.5:c.3145G>T	p.Gly1049Trp	p.G1049W	ENST00000305123	NM_005544.2	1049	Ggg/Tgg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147506	47147506	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	335	85	0	ENST00000409792.3:c.4820T>C	p.Met1607Thr	p.M1607T	ENST00000409792	NM_014159.6	1607	aTg/aCg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162423	47162423	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	347	91	0	ENST00000409792.3:c.3703T>A	p.Leu1235Met	p.L1235M	ENST00000409792	NM_014159.6	1235	Ttg/Atg																																																																															
MITF	4286	MSKCC	GRCh37	3	69990420	69990420	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	201	85	0	ENST00000352241.4:c.700G>T	p.Glu234Ter	p.E234*	ENST00000352241	NM_198159.2	234	Gaa/Taa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391120	89391120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	481	128	2	ENST00000336596.2:c.1186G>T	p.Val396Leu	p.V396L	ENST00000336596	NM_005233.5	396	Gtg/Ttg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170002371	170002371	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	191	66	0	ENST00000295797.4:c.1190A>T	p.Tyr397Phe	p.Y397F	ENST00000295797	NM_002740.5	397	tAc/tTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295333	1295333	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	357	78	0				ENST00000310581	NM_198253.2																																																																																	
APC	324	MSKCC	GRCh37	5	112137003	112137003	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	273	94	0	ENST00000257430.4:c.757G>T	p.Gly253Cys	p.G253C	ENST00000257430	NM_000038.5	253	Ggc/Tgc																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020757	26020757	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	253	139	0	ENST00000357647.3:c.41del	p.Gly14AlafsTer23	p.G14Afs*23	ENST00000357647	NM_003529.2	14	Ggc/gc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190381	32190381	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	682	280	0	ENST00000375023.3:c.358G>T	p.Asp120Tyr	p.D120Y	ENST00000375023	NM_004557.3	120	Gac/Tac																																																																															
HGF	3082	MSKCC	GRCh37	7	81372731	81372731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	242	58	0	ENST00000222390.5:c.803G>A	p.Arg268Lys	p.R268K	ENST00000222390	NM_000601.4	268	aGg/aAg																																																																															
SMO	6608	MSKCC	GRCh37	7	128848659	128848659	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	529	92	0	ENST00000249373.3:c.1324G>C	p.Ala442Pro	p.A442P	ENST00000249373	NM_005631.4	442	Gcc/Ccc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891527	151891527	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	264	93	0	ENST00000262189.6:c.4505A>T	p.Asp1502Val	p.D1502V	ENST00000262189	NM_170606.2	1502	gAt/gTt																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345752	152345752	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	150	49	0	ENST00000359321.1:c.818G>C	p.Gly273Ala	p.G273A	ENST00000359321	NM_005431.1	273	gGa/gCa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021661	69021661	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	303	96	0	ENST00000288368.4:c.2949C>G	p.Ser983Arg	p.S983R	ENST00000288368	NM_024870.2	983	agC/agG																																																																															
PREX2	80243	MSKCC	GRCh37	8	69028026	69028026	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	315	51	0	ENST00000288368.4:c.3185G>C	p.Arg1062Pro	p.R1062P	ENST00000288368	NM_024870.2	1062	cGt/cCt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485872	8485872	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	320	79	2	ENST00000356435.5:c.2945C>A	p.Thr982Asn	p.T982N	ENST00000356435		982	aCt/aAt																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966704	36966704	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	352	84	0	ENST00000358127.4:c.622G>T	p.Val208Leu	p.V208L	ENST00000358127	NM_001280556.1	208	Gtg/Ttg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020669	37020669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	348	190	0	ENST00000358127.4:c.176G>T	p.Arg59Leu	p.R59L	ENST00000358127	NM_001280556.1	59	cGg/cTg																																																																															
ABL1	25	MSKCC	GRCh37	9	133760537	133760537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	803	169	3	ENST00000318560.5:c.2860G>T	p.Gly954Cys	p.G954C	ENST00000318560	NM_005157.4	954	Ggc/Tgc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044700	47044700	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	798	97	1	ENST00000329236.7:c.1867-1G>T		p.X623_splice	ENST00000329236	NM_001204466.1	623																																																																																
RBM10	8241	MSKCC	GRCh37	X	47045494	47045494	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	550	90	0	ENST00000329236.7:c.2227C>A	p.Arg743Ser	p.R743S	ENST00000329236	NM_001204466.1	743	Cgc/Agc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426428	47426428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	660	107	0	ENST00000377045.4:c.771C>A	p.Ser257Arg	p.S257R	ENST00000377045	NM_001654.4	257	agC/agA																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239946	53239946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	544	97	0	ENST00000375401.3:c.1495G>T	p.Val499Leu	p.V499L	ENST00000375401	NM_004187.3	499	Gtg/Ttg																																																																															
MED12	9968	MSKCC	GRCh37	X	70357755	70357755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	656	115	0	ENST00000374080.3:c.6006G>T	p.Gln2002His	p.Q2002H	ENST00000374080		2002	caG/caT																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575491	64575492	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	593	79	0	ENST00000337652.1:c.540_541delinsT	p.Ala181ProfsTer9	p.A181Pfs*9	ENST00000337652	NM_130803.2	180	ctCGcc/ctTcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578465	7578466	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0054303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	848	189	0	ENST00000269305.4:c.464_465delinsT	p.Thr155IlefsTer15	p.T155Ifs*15	ENST00000269305	NM_001126112.2	155	aCC/aT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101501	27101501	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	1002	492	0	ENST00000324856.7:c.4783A>G	p.Met1595Val	p.M1595V	ENST00000324856	NM_006015.4	1595	Atg/Gtg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31388054	31388054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	402	14	0	ENST00000328111.2:c.1855G>A	p.Glu619Lys	p.E619K	ENST00000328111	NM_006892.3	619	Gag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061851	38061851	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	1292	716	0	ENST00000250448.2:c.138del	p.Tyr47ThrfsTer2	p.Y47Tfs*2	ENST00000250448	NM_004496.3	46	acC/ac																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376154	225376162	+	inframe_deletion	In_Frame_Del	DEL	TCCCTTTCA	TCCCTTTCA	-			P-0054309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	667	253	0	ENST00000264414.4:c.792_800del	p.Glu265_Glu267del	p.E265_E267del	ENST00000264414	NM_003590.4	264	gtTGAAAGGGAa/gta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0054311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	736	496	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
IKBKE	9641	MSKCC	GRCh37	1	206648328	206648328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	693	227	0	ENST00000367120.3:c.349C>T	p.Arg117Cys	p.R117C	ENST00000367120	NM_014002.3	117	Cgc/Tgc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631671	90631671	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1241	741	103	0	ENST00000330062.3:c.598G>C	p.Asp200His	p.D200H	ENST00000330062	NM_002168.2	200	Gat/Cat																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99440125	99440125	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	314	265	0	ENST00000268035.6:c.1093C>G	p.Arg365Gly	p.R365G	ENST00000268035	NM_000875.3	365	Cga/Gga																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246670505	246670505	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	544	446	0	ENST00000388985.4:c.15G>T	p.Lys5Asn	p.K5N	ENST00000388985		5	aaG/aaT																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279608	123279613	+	inframe_deletion	In_Frame_Del	DEL	TCTACG	TCTACG	-			P-0054311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	616	179	0	ENST00000358487.5:c.819_824del	p.Asp273_Val274del	p.D273_V274del	ENST00000358487	NM_000141.4	273	gaCGTAGAg/gag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118362476	118362476	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	287	163	0	ENST00000534358.1:c.4837C>G	p.Leu1613Val	p.L1613V	ENST00000534358	NM_005933.3	1613	Cta/Gta																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434429	121434429	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	961	143	0	ENST00000257555.6:c.1193A>G	p.Gln398Arg	p.Q398R	ENST00000257555		398	cAg/cGg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639506	3639506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	972	425	0	ENST00000294008.3:c.4133C>T	p.Pro1378Leu	p.P1378L	ENST00000294008	NM_032444.2	1378	cCg/cTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781778	3781778	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0054311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	501	216	0	ENST00000262367.5:c.4889A>T	p.Glu1630Val	p.E1630V	ENST00000262367	NM_004380.2	1630	gAg/gTg																																																																															
CD79A	973	MSKCC	GRCh37	19	42384788	42384788	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	340	91	0	ENST00000221972.3:c.550G>T	p.Asp184Tyr	p.D184Y	ENST00000221972	NM_021601.3	184	Gat/Tat																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637391	47637392	+	missense_variant	Missense_Mutation	DNP	GT	GT	TA			P-0054311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	581	312	1	ENST00000233146.2:c.525_526delinsTA	p.Cys176Ser	p.C176S	ENST00000233146	NM_000251.2	175	ctGTgt/ctTAgt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933472	49933472	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	996	379	0	ENST00000296474.3:c.2718G>T	p.Gln906His	p.Q906H	ENST00000296474	NM_002447.2	906	caG/caT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921568	178921568	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	237	19	0	ENST00000263967.3:c.1050C>G	p.Asp350Glu	p.D350E	ENST00000263967	NM_006218.2	350	gaC/gaG																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772949	135772949	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	394	137	0	ENST00000298552.3:c.2674A>G	p.Arg892Gly	p.R892G	ENST00000298552	NM_001162426.1	892	Aga/Gga																																																																															
MED12	9968	MSKCC	GRCh37	X	70357603	70357603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	774	1024	0	ENST00000374080.3:c.5854G>A	p.Gly1952Arg	p.G1952R	ENST00000374080		1952	Gga/Aga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0054313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	646	127	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0054313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	322	25	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																															
RB1	5925	MSKCC	GRCh37	13	48916758	48916758	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	357	41	0	ENST00000267163.4:c.289del	p.Glu97AsnfsTer14	p.E97Nfs*14	ENST00000267163	NM_000321.2	96	aaG/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577529	7577529	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	791	69	0	ENST00000269305.4:c.752T>C	p.Ile251Thr	p.I251T	ENST00000269305	NM_001126112.2	251	aTc/aCc																																																																															
ATRX	546	MSKCC	GRCh37	X	76845321	76845322	+	missense_variant	Missense_Mutation	DNP	TT	TT	GG			P-0054313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	346	15	0	ENST00000373344.5:c.6199_6200delinsCC	p.Lys2067Pro	p.K2067P	ENST00000373344	NM_000489.3	2067	AAa/CCa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259975	16259975	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	765	61	0	ENST00000375759.3:c.7240G>T	p.Glu2414Ter	p.E2414*	ENST00000375759	NM_015001.2	2414	Gaa/Taa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953918	32953918	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	351	18	0	ENST00000380152.3:c.8985T>G	p.Asp2995Glu	p.D2995E	ENST00000380152		2995	gaT/gaG																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953925	32953925	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	372	17	0	ENST00000380152.3:c.8992T>A	p.Ser2998Thr	p.S2998T	ENST00000380152		2998	Tct/Act																																																																															
ATRX	546	MSKCC	GRCh37	X	76872105	76872105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	367	20	1	ENST00000373344.5:c.5542C>A	p.Gln1848Lys	p.Q1848K	ENST00000373344	NM_000489.3	1848	Cag/Aag																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577411	64577443	+	inframe_deletion	In_Frame_Del	DEL	GTTGGTAGGGATGACGCGGTTGACAGCCAGAAA	GTTGGTAGGGATGACGCGGTTGACAGCCAGAAA	-			P-0054316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	889	225	1	ENST00000337652.1:c.139_171del	p.Phe47_Asn57del	p.F47_N57del	ENST00000337652	NM_130803.2	47	TTTCTGGCTGTCAACCGCGTCATCCCTACCAAC/-																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0054320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	617	162	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	847	266	0	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0054325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	278	76	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	650	172	0	ENST00000269305.4:c.578A>C	p.His193Pro	p.H193P	ENST00000269305	NM_001126112.2	193	cAt/cCt																																																																															
ERG	2078	MSKCC	GRCh37	21	39817493	39817493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	576	545	0	ENST00000288319.7:c.70G>A	p.Gly24Arg	p.G24R	ENST00000288319	NM_182918.3	24	Gga/Aga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134614	2134614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	1073	286	0	ENST00000219476.3:c.4391C>T	p.Ser1464Phe	p.S1464F	ENST00000219476	NM_000548.3	1464	tCc/tTc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72058506	72058506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	346	40	0	ENST00000357731.5:c.934C>T	p.Leu312Phe	p.L312F	ENST00000357731	NM_173808.2	312	Ctt/Ttt																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134918	41134918	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	331	70	0	ENST00000379561.5:c.710G>A	p.Trp237Ter	p.W237*	ENST00000379561	NM_002015.3	237	tGg/tAg																																																																															
LYN	4067	MSKCC	GRCh37	8	56854546	56854546	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	352	119	0	ENST00000519728.1:c.128G>T	p.Arg43Met	p.R43M	ENST00000519728	NM_002350.3	43	aGg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0054326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	420	39	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143045784	143045784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	590	50	0	ENST00000262992.4:c.1850G>T	p.Cys617Phe	p.C617F	ENST00000262992	NM_001101669.1	617	tGt/tTt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18276969	18276969	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0054326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	370	36	0	ENST00000222254.8:c.1417-1G>A		p.X473_splice	ENST00000222254	NM_005027.3	473																																																																																
HGF	3082	MSKCC	GRCh37	7	81374315	81374315	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0054326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	272	24	0	ENST00000222390.5:c.746+1G>T		p.X249_splice	ENST00000222390	NM_000601.4	249																																																																																
RBM10	8241	MSKCC	GRCh37	X	47040923	47040923	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	1419	113	0	ENST00000329236.7:c.1219G>T	p.Glu407Ter	p.E407*	ENST00000329236	NM_001204466.1	407	Gag/Tag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162749921	162749921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	515	56	0	ENST00000367921.3:c.2453C>A	p.Ala818Asp	p.A818D	ENST00000367921	NM_006182.2	818	gCc/gAc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220377	1220377	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	944	91	0	ENST00000326873.7:c.470T>G	p.Phe157Cys	p.F157C	ENST00000326873	NM_000455.4	157	tTc/tGc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366957	15366957	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	839	86	1	ENST00000263377.2:c.1669G>T	p.Val557Leu	p.V557L	ENST00000263377	NM_058243.2	557	Gtg/Ttg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36215889	36215889	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0054326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	1146	70	0	ENST00000222270.7:c.3430-1G>T		p.X1144_splice	ENST00000222270	NM_014727.1	1144																																																																																
SF3B1	23451	MSKCC	GRCh37	2	198268383	198268383	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	440	64	0	ENST00000335508.6:c.1645C>G	p.Arg549Gly	p.R549G	ENST00000335508	NM_012433.2	549	Cgt/Ggt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259169	89259169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	403	30	0	ENST00000336596.2:c.313G>T	p.Asp105Tyr	p.D105Y	ENST00000336596	NM_005233.5	105	Gac/Tac																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163736	152163736	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	518	23	0	ENST00000206249.3:c.457A>T	p.Asn153Tyr	p.N153Y	ENST00000206249	NM_000125.3	153	Aat/Tat																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166802	32166805	+	missense_variant	Missense_Mutation	ONP	CCAT	CCAT	TTAC			P-0054326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	1228	82	2	ENST00000375023.3:c.4433_4436delinsGTAA	p.His1478_Gly1479delinsArgLys	p.H1478_G1479delinsRK	ENST00000375023	NM_004557.3	1478	cATGGa/cGTAAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0054327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	361	69	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
MAX	4149	MSKCC	GRCh37	14	65544756	65544756	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0054327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	488	47	0	ENST00000358664.4:c.172-2A>G		p.X58_splice	ENST00000358664	NM_002382.4	58																																																																																
STAG2	10735	MSKCC	GRCh37	X	123202427	123202427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	385	79	0	ENST00000218089.9:c.2279G>A	p.Arg760His	p.R760H	ENST00000218089	NM_001042749.1	760	cGt/cAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858376	9858376	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	490	87	0	ENST00000330684.3:c.3025A>G	p.Arg1009Gly	p.R1009G	ENST00000330684	NM_001134407.1	1009	Aga/Gga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0054342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	402	96	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144146	11144146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	942	49	1	ENST00000344626.4:c.3727C>T	p.Arg1243Trp	p.R1243W	ENST00000344626	NM_003072.3	1243	Cgg/Tgg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143130120	143130120	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	549	42	1	ENST00000262992.4:c.896delA	p.Asn299MetfsTer10	p.N299Mfs*10	ENST00000262992	NM_001101669.1	299	aAt/at																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827886	40827886	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201911869		P-0054342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	559	92	0	ENST00000373198.4:c.2542G>A	p.Gly848Arg	p.G848R	ENST00000373198	NM_133170.3	848	Gga/Aga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405953	157405954	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0054342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	704	44	0	ENST00000346085.5:c.2201dup	p.Ser736IlefsTer27	p.S736Ifs*27	ENST00000346085	NM_020732.3	732	ccg/ccGg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	271	49	0	ENST00000291552.4:c.101C>A	p.Ser34Tyr	p.S34Y	ENST00000291552	NM_006758.2	34	tCt/tAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034491	47034491	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0054342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	747	167	0	ENST00000329236.7:c.345G>T	p.Gln115His	p.Q115H	ENST00000329236	NM_001204466.1	115	caG/caT																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110165	8110165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	713	101	0	ENST00000585124.1:c.440G>A	p.Arg147Gln	p.R147Q	ENST00000585124	NM_004217.3	147	cGg/cAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	1363	300	1	ENST00000326873.7:c.709G>A	p.Asp237Asn	p.D237N	ENST00000326873	NM_000455.4	237	Gac/Aac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031970	10031970	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	775	104	1	ENST00000330684.3:c.853del	p.Asp285ThrfsTer8	p.D285Tfs*8	ENST00000330684	NM_001134407.1	285	Gac/ac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15950285	15950285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	590	98	0	ENST00000268712.3:c.6659G>T	p.Gly2220Val	p.G2220V	ENST00000268712	NM_006311.3	2220	gGt/gTt																																																																															
KDR	3791	MSKCC	GRCh37	4	55955634	55955634	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs138424770		P-0054342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	411	63	0	ENST00000263923.4:c.3311C>A	p.Ser1104Tyr	p.S1104Y	ENST00000263923	NM_002253.2	1104	tCt/tAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467545	66467545	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	338	66	0	ENST00000273854.3:c.724G>T	p.Val242Phe	p.V242F	ENST00000273854	NM_004439.5	242	Gtc/Ttc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229491	98229491	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	479	83	0	ENST00000331920.6:c.2467C>A	p.His823Asn	p.H823N	ENST00000331920	NM_000264.3	823	Cac/Aac																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	308	29	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
ATR	545	MSKCC	GRCh37	3	142268419	142268419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	408	39	0	ENST00000350721.4:c.3073C>T	p.Arg1025Cys	p.R1025C	ENST00000350721	NM_001184.3	1025	Cgt/Tgt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710627	114710627	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	472	34	0	ENST00000543371.1:c.112G>T	p.Glu38Ter	p.E38*	ENST00000543371	NM_001198531.1	38	Gag/Tag																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7982766	7982767	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0054343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	1133	114	0	ENST00000319144.4:c.1018dup	p.Leu340ProfsTer34	p.L340Pfs*34	ENST00000319144	NM_001139.2	340	ctc/cCtc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808028	1808028	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1261	1260	91	0	ENST00000260795.2:c.2004C>G	p.Asp668Glu	p.D668E	ENST00000260795		668	gaC/gaG																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38958875	38958875	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	271	30	0	ENST00000357387.3:c.2237T>C	p.Phe746Ser	p.F746S	ENST00000357387	NM_152756.3	746	tTc/tCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0054344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	1201	812	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259166	89259166	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	399	136	1	ENST00000336596.2:c.310C>T	p.Arg104Ter	p.R104*	ENST00000336596	NM_005233.5	104	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0054344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	317	106	0	ENST00000257430.4:c.4128T>A	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taA																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602601	10602601	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751665354		P-0054344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	1112	358	0	ENST00000171111.5:c.977G>A	p.Arg326His	p.R326H	ENST00000171111	NM_203500.1	326	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604706	48604706	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	521	172	0	ENST00000342988.3:c.1528G>C	p.Gly510Arg	p.G510R	ENST00000342988	NM_005359.5	510	Gga/Cga																																																																															
AKT3	10000	MSKCC	GRCh37	1	243708834	243708834	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	425	104	0	ENST00000263826.5:c.1229G>C	p.Trp410Ser	p.W410S	ENST00000263826	NM_005465.4	410	tGg/tCg																																																																															
RARA	5914	MSKCC	GRCh37	17	38511512	38511513	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0054344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	740	275	0	ENST00000254066.5:c.1013-2dup		p.X338_splice	ENST00000254066	NM_000964.3	338																																																																																
NCOA3	8202	MSKCC	GRCh37	20	46265028	46265028	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1442	563	200	0	ENST00000371998.3:c.1898G>T	p.Gly633Val	p.G633V	ENST00000371998		633	gGt/gTt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876413	35876413	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	838	246	0	ENST00000303115.3:c.1205A>G	p.Gln402Arg	p.Q402R	ENST00000303115	NM_002185.3	402	cAg/cGg																																																																															
APC	324	MSKCC	GRCh37	5	112174583	112174587	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGT	TGTGT	-			P-0054344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	385	167	0	ENST00000257430.4:c.3293_3297del	p.Cys1098PhefsTer19	p.C1098Ffs*19	ENST00000257430	NM_000038.5	1098	TGTGTt/t																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922228	39922228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	297	407	1	ENST00000378444.4:c.3944C>T	p.Ser1315Phe	p.S1315F	ENST00000378444	NM_001123385.1	1315	tCc/tTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	263	60	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846308	156846308	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	915	145	0	ENST00000524377.1:c.1753delC	p.Leu585CysfsTer73	p.L585Cfs*73	ENST00000524377	NM_002529.3	583	cgC/cg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	769	262	9	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256768	19256769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1202792889		P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	875	52	2	ENST00000162023.5:c.944dup	p.Val316SerfsTer6	p.V316Sfs*6	ENST00000162023		315	cca/ccCa																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67201684	67201684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	790	137	0	ENST00000312629.5:c.985C>T	p.Arg329Trp	p.R329W	ENST00000312629	NM_003952.2	329	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	334	47	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175857	24175859	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	598	15	0	ENST00000263121.7:c.1091_1093del	p.Lys364del	p.K364del	ENST00000263121	NM_003073.3	362	gAGAag/gag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	689	146	4	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390946	89390946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	292	58	0	ENST00000336596.2:c.1012G>A	p.Glu338Lys	p.E338K	ENST00000336596	NM_005233.5	338	Gag/Aag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543828	212543828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	322	98	0	ENST00000342788.4:c.1571G>A	p.Arg524His	p.R524H	ENST00000342788	NM_005235.2	524	cGc/cAc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664989	138664989	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	292	67	0	ENST00000330315.3:c.576del	p.Lys193SerfsTer78	p.K193Sfs*78	ENST00000330315	NM_023067.3	192	ccC/cc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	1006	203	1	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	874	142	3	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	674	107	10	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	468	38	3	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910411	50910411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	850	290	2	ENST00000440232.2:c.1666G>A	p.Val556Ile	p.V556I	ENST00000440232	NM_002691.3	556	Gta/Ata																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200723	128200723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	812	148	3	ENST00000341105.2:c.1082G>A	p.Arg361His	p.R361H	ENST00000341105	NM_032638.4	361	cGc/cAc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456738	32456738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	718	142	0	ENST00000332351.3:c.154C>T	p.Arg52Cys	p.R52C	ENST00000332351	NM_024426.4	52	Cgt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	584	100	0	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136798	2136798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	907	170	1	ENST00000219476.3:c.4915C>T	p.Arg1639Cys	p.R1639C	ENST00000219476	NM_000548.3	1639	Cgc/Tgc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	422	23	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228979	36228979	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	783	133	2	ENST00000222270.7:c.7759C>T	p.Arg2587Ter	p.R2587*	ENST00000222270	NM_014727.1	2587	Cga/Tga																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62326485	62326485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	1083	190	1	ENST00000508582.2:c.3482G>A	p.Gly1161Asp	p.G1161D	ENST00000508582		1161	gGc/gAc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739024	145739024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	801	155	0	ENST00000428558.2:c.2131G>A	p.Glu711Lys	p.E711K	ENST00000428558	NM_004260.3	711	Gag/Aag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436297	110436302	+	inframe_deletion	In_Frame_Del	DEL	CGGCGG	CGGCGG	-			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	252	19	0	ENST00000375856.3:c.2099_2104del	p.Ala700_Ala701del	p.A700_A701del	ENST00000375856	NM_003749.2	700	gCCGCCGtg/gtg																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872936	136872936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	293	64	0	ENST00000241393.3:c.562C>T	p.Arg188Cys	p.R188C	ENST00000241393	NM_003467.2	188	Cgc/Tgc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6035204	6035207	+	frameshift_variant	Frame_Shift_Del	DEL	CTGT	CTGT	-			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	320	87	0	ENST00000265849.7:c.861_864delACAG	p.Arg287SerfsTer19	p.R287Sfs*19	ENST00000265849	NM_000535.5	287	agACAG/ag																																																																															
CUL3	8452	MSKCC	GRCh37	2	225342999	225342999	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	374	100	0	ENST00000264414.4:c.2093A>G	p.Asp698Gly	p.D698G	ENST00000264414	NM_003590.4	698	gAc/gGc																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655419	45655419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	672	197	1	ENST00000407780.3:c.433G>A	p.Ala145Thr	p.A145T	ENST00000407780	NM_001283052.1	145	Gcc/Acc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356332	66356332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	351	87	0	ENST00000273854.3:c.1165G>A	p.Val389Met	p.V389M	ENST00000273854	NM_004439.5	389	Gtg/Atg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128201270	128201270	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	572	133	0	ENST00000265960.3:c.1465C>T	p.Arg489Ter	p.R489*	ENST00000265960	NM_001006617.1	489	Cga/Tga																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31504699	31504699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	411	38	1	ENST00000344624.3:c.1631G>A	p.Arg544His	p.R544H	ENST00000344624		544	cGc/cAc																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652243	36652243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	650	126	0	ENST00000244741.5:c.365G>A	p.Arg122His	p.R122H	ENST00000244741	NM_000389.4	122	cGc/cAc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324542	31324543	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	418	22	0	ENST00000412585.2:c.265_266delCA	p.Gln89AspfsTer9	p.Q89Dfs*9	ENST00000412585	NM_005514.6	89	CAg/g																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046749	180046749	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121909657		P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	968	148	1	ENST00000261937.6:c.2563G>A	p.Ala855Thr	p.A855T	ENST00000261937	NM_182925.4	855	Gcc/Acc																																																																															
MGA	23269	MSKCC	GRCh37	15	42026793	42026793	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	239	54	0	ENST00000219905.7:c.3916+1G>A		p.X1306_splice	ENST00000219905	NM_001164273.1	1306																																																																																
PIK3CD	5293	MSKCC	GRCh37	1	9782588	9782588	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	691	171	1	ENST00000377346.4:c.2350C>T	p.Leu784Phe	p.L784F	ENST00000377346	NM_005026.3	784	Ctc/Ttc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11313963	11313963	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	658	154	0	ENST00000361445.4:c.773A>G	p.Asp258Gly	p.D258G	ENST00000361445	NM_004958.3	258	gAt/gGt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118363823	118363823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	404	100	0	ENST00000534358.1:c.5056C>T	p.Arg1686Cys	p.R1686C	ENST00000534358	NM_005933.3	1686	Cgc/Tgc																																																																															
MSI1	4440	MSKCC	GRCh37	12	120785265	120785266	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCCGCTGCC			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	581	66	0	ENST00000257552.2:c.834_842dup	p.Ala279_Ala281dup	p.A279_A281dup	ENST00000257552	NM_002442.3	279	gct/gcGGCAGCGGCt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929235	32929235	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	424	112	0	ENST00000380152.3:c.7248del	p.His2417ThrfsTer50	p.H2417Tfs*50	ENST00000380152		2415	caT/ca																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135327	30135327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	365	91	0	ENST00000331968.5:c.491G>A	p.Gly164Glu	p.G164E	ENST00000331968	NM_002742.2	164	gGa/gAa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43707872	43707873	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	684	163	0	ENST00000382044.4:c.5008_5009del	p.Ser1670ArgfsTer9	p.S1670Rfs*9	ENST00000382044	NM_001141980.1	1670	TCa/a																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639089	3639090	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	830	170	0	ENST00000294008.3:c.4549dup	p.Glu1517GlyfsTer33	p.E1517Gfs*33	ENST00000294008	NM_032444.2	1517	gaa/gGaa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647634	23647634	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	310	66	0	ENST00000261584.4:c.233T>C	p.Val78Ala	p.V78A	ENST00000261584	NM_024675.3	78	gTt/gCt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119722	70119722	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	420	95	0	ENST00000245479.2:c.727del	p.Thr243ProfsTer10	p.T243Pfs*10	ENST00000245479	NM_000346.3	242	Aaa/aa																																																																															
CIC	23152	MSKCC	GRCh37	19	42795424	42795424	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	812	117	0	ENST00000575354.2:c.2504A>T	p.Gln835Leu	p.Q835L	ENST00000575354	NM_015125.3	835	cAg/cTg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42843883	42843883	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	385	79	0	ENST00000398585.3:c.1036A>T	p.Thr346Ser	p.T346S	ENST00000398585	NM_001135099.1	346	Acg/Tcg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12647758	12647758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	244	59	2	ENST00000251849.4:c.622G>T	p.Ala208Ser	p.A208S	ENST00000251849	NM_002880.3	208	Gca/Tca																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439283	52439283	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	689	132	1	ENST00000460680.1:c.959G>T	p.Cys320Phe	p.C320F	ENST00000460680	NM_004656.3	320	tGc/tTc																																																																															
KDR	3791	MSKCC	GRCh37	4	55976881	55976881	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	523	147	0	ENST00000263923.4:c.1031del	p.Val344GlyfsTer19	p.V344Gfs*19	ENST00000263923	NM_002253.2	344	gTg/gg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270186	66270186	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	173	12	0	ENST00000273854.3:c.1696T>A	p.Ser566Thr	p.S566T	ENST00000273854	NM_004439.5	566	Tcc/Acc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66468023	66468023	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	175	20	0	ENST00000273854.3:c.247-1G>A		p.X83_splice	ENST00000273854	NM_004439.5	83																																																																																
RAC1	5879	MSKCC	GRCh37	7	6441602	6441602	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	390	71	0	ENST00000356142.4:c.449A>T	p.Glu150Val	p.E150V	ENST00000356142	NM_018890.3	150	gAg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873887	151873887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	345	59	0	ENST00000262189.6:c.8651G>A	p.Arg2884Gln	p.R2884Q	ENST00000262189	NM_170606.2	2884	cGa/cAa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70982040	70982040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	960	174	1	ENST00000276594.2:c.56C>T	p.Pro19Leu	p.P19L	ENST00000276594	NM_024504.3	19	cCg/cTg																																																																															
TEK	7010	MSKCC	GRCh37	9	27169529	27169529	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	489	32	0	ENST00000380036.4:c.530A>C	p.His177Pro	p.H177P	ENST00000380036	NM_000459.3	177	cAc/cCc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475318	40475318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	593	60	0	ENST00000264657.5:c.1708G>A	p.Asp570Asn	p.D570N	ENST00000264657	NM_139276.2	570	Gac/Aac																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349778	15349778	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199833114		P-0054352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	1180	103	1	ENST00000263377.2:c.3796G>A	p.Glu1266Lys	p.E1266K	ENST00000263377	NM_058243.2	1266	Gag/Aag																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217015	7217015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	683	71	0	ENST00000380728.2:c.506C>T	p.Ala169Val	p.A169V	ENST00000380728		169	gCt/gTt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984760	11984760	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	282	17	0	ENST00000353533.5:c.306G>C	p.Leu102Phe	p.L102F	ENST00000353533	NM_003010.3	102	ttG/ttC																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	361	37	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	660	86	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	456	90	0	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	362	60	1	ENST00000342505.4:c.1016delA	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	460	103	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29556463	29556463	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	349	33	0	ENST00000358273.4:c.2835del	p.Phe945LeufsTer9	p.F945Lfs*9	ENST00000358273	NM_001042492.2	944	Ttt/tt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572649	64572649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	788	124	0	ENST00000337652.1:c.1222G>A	p.Ala408Thr	p.A408T	ENST00000337652	NM_130803.2	408	Gcc/Acc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	1067	75	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
FYN	2534	MSKCC	GRCh37	6	112020775	112020775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	340	80	0	ENST00000368678.4:c.796C>T	p.Arg266Cys	p.R266C	ENST00000368678		266	Cgt/Tgt																																																																															
PGR	5241	MSKCC	GRCh37	11	100998483	100998483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	448	130	2	ENST00000325455.5:c.1319C>T	p.Thr440Met	p.T440M	ENST00000325455	NM_001202474.3	440	aCg/aTg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027087	71027087	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	565	111	1	ENST00000318789.4:c.1240delC	p.Leu414Ter	p.L414*	ENST00000318789	NM_032682.5	414	Ctg/tg																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731419	47731419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	60	22	0	ENST00000449228.1:c.373G>A	p.Gly125Arg	p.G125R	ENST00000449228	NM_001127240.2	125	Gga/Aga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004601	16004601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	390	36	0	ENST00000268712.3:c.2653G>A	p.Ala885Thr	p.A885T	ENST00000268712	NM_006311.3	885	Gct/Act																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871044	12871044	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	388	78	0	ENST00000228872.4:c.275delC	p.Pro92ArgfsTer27	p.P92Rfs*27	ENST00000228872	NM_004064.3	91	Ccc/cc																																																																															
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	873	42	2	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447773	49447773	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	478	94	0	ENST00000301067.7:c.661del	p.Ala221LeufsTer40	p.A221Lfs*40	ENST00000301067	NM_003482.3	221	Gct/ct																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731468	47731468	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	54	11	0	ENST00000449228.1:c.324delG	p.Phe109SerfsTer120	p.F109Sfs*120	ENST00000449228	NM_001127240.2	108	ggG/gg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1918645	1918645	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372805518		P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	345	19	0	ENST00000382895.3:c.808G>A	p.Ala270Thr	p.A270T	ENST00000382895	NM_133330.2	270	Gcc/Acc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347224	89347224	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	743	49	1	ENST00000301030.4:c.5726del	p.Pro1909ArgfsTer54	p.P1909Rfs*54	ENST00000301030	NM_001256183.1	1909	cCg/cg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964100	28964100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	380	36	0	ENST00000282397.4:c.1802A>G	p.His601Arg	p.H601R	ENST00000282397	NM_002019.4	601	cAc/cGc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127484	55127484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	446	116	1	ENST00000257290.5:c.272C>T	p.Ser91Leu	p.S91L	ENST00000257290	NM_006206.4	91	tCg/tTg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121016	29121016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	559	86	2	ENST00000328354.6:c.541C>T	p.Arg181Cys	p.R181C	ENST00000328354	NM_007194.3	181	Cgt/Tgt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65307172	65307172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	381	86	0	ENST00000342505.4:c.2516G>A	p.Arg839Gln	p.R839Q	ENST00000342505	NM_002227.2	839	cGa/cAa																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625161	69625161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	943	136	1	ENST00000334134.2:c.632G>A	p.Arg211Gln	p.R211Q	ENST00000334134	NM_005247.2	211	cGg/cAg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526228	31526228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	837	175	1	ENST00000344624.3:c.812G>A	p.Arg271Gln	p.R271Q	ENST00000344624		271	cGa/cAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440489	49440489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	751	147	1	ENST00000301067.7:c.4321C>T	p.Arg1441Cys	p.R1441C	ENST00000301067	NM_003482.3	1441	Cgc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260470	16260470	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	434	72	0	ENST00000375759.3:c.7739delA	p.Lys2580SerfsTer3	p.K2580Sfs*3	ENST00000375759	NM_015001.2	2579	Aaa/aa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193094312	193094312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	360	59	0	ENST00000367435.3:c.202C>T	p.His68Tyr	p.H68Y	ENST00000367435	NM_024529.4	68	Cac/Tac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373752	118373752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	325	59	0	ENST00000534358.1:c.7145G>A	p.Arg2382Gln	p.R2382Q	ENST00000534358	NM_005933.3	2382	cGa/cAa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060742	38060742	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	1020	218	0	ENST00000250448.2:c.1247A>T	p.Asp416Val	p.D416V	ENST00000250448	NM_004496.3	416	gAc/gTc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060975	38061029	+	frameshift_variant	Frame_Shift_Del	DEL	ACTGTGGTCCAGAGTCTGGGGGCTGGCGGCGGGCCCGGGGGCCGGCGCGCCCTCT	ACTGTGGTCCAGAGTCTGGGGGCTGGCGGCGGGCCCGGGGGCCGGCGCGCCCTCT	-			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	341	124	0	ENST00000250448.2:c.960_1014del	p.Glu321GlyfsTer11	p.E321Gfs*11	ENST00000250448	NM_004496.3	320	ctAGAGGGCGCGCCGGCCCCCGGGCCCGCCGCCAGCCCCCAGACTCTGGACCACAGT/ct																																																																															
NUP93	9688	MSKCC	GRCh37	16	56865831	56865831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	270	45	0	ENST00000308159.5:c.1163G>A	p.Arg388Gln	p.R388Q	ENST00000308159	NM_014669.4	388	cGg/cAg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110159	8110159	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	571	89	0	ENST00000585124.1:c.446G>T	p.Arg149Met	p.R149M	ENST00000585124	NM_004217.3	149	aGg/aTg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40876325	40876326	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	390	24	0	ENST00000428826.2:c.363dup	p.Met122TyrfsTer5	p.M122Yfs*5	ENST00000428826		121	-/T																																																																															
ERF	2077	MSKCC	GRCh37	19	42753027	42753027	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	866	132	1	ENST00000222329.4:c.1237del	p.Ala413GlnfsTer4	p.A413Qfs*4	ENST00000222329	NM_006494.2	413	Gca/ca																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702377	47702377	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	242	38	0	ENST00000233146.2:c.1977del	p.Asp660IlefsTer25	p.D660Ifs*25	ENST00000233146	NM_000251.2	658	gAa/ga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52661372	52661373	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	295	30	0	ENST00000394830.3:c.1457_1458delAG	p.Glu486AlafsTer20	p.E486Afs*20	ENST00000394830	NM_018313.4	486	gAG/g																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356296	66356296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	469	168	1	ENST00000273854.3:c.1201C>T	p.His401Tyr	p.H401Y	ENST00000273854	NM_004439.5	401	Cat/Tat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187525729	187525729	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	258	51	0	ENST00000441802.2:c.10351-1G>T		p.X3451_splice	ENST00000441802	NM_005245.3	3451																																																																																
NSD1	64324	MSKCC	GRCh37	5	176637090	176637090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	533	77	0	ENST00000439151.2:c.1690G>A	p.Ala564Thr	p.A564T	ENST00000439151	NM_022455.4	564	Gcc/Acc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894931	101894933	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	264	62	0	ENST00000374994.4:c.486_488del	p.Glu162del	p.E162del	ENST00000374994	NM_004612.2	162	GAG/-																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390678	139390678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	912	68	1	ENST00000277541.6:c.7513C>T	p.Pro2505Ser	p.P2505S	ENST00000277541	NM_017617.3	2505	Cct/Tct																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413024	63413024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	459	190	1	ENST00000330258.3:c.143G>A	p.Gly48Asp	p.G48D	ENST00000330258	NM_152424.3	48	gGc/gAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241722	55241722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052366-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			624	98	553	0	ENST00000275493.2:c.2170G>A	p.Gly724Ser	p.G724S	ENST00000275493	NM_005228.3	724	Ggc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0052366-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	111	378	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																															
EP300	2033	MSKCC	GRCh37	22	41573094	41573095	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052366-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			519	100	972	0	ENST00000263253.7:c.5381dup	p.His1795AlafsTer88	p.H1795Afs*88	ENST00000263253	NM_001429.3	1793	-/A																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449782	8449782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052366-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			679	83	560	2	ENST00000356435.5:c.3931C>A	p.Pro1311Thr	p.P1311T	ENST00000356435		1311	Cct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7579415	7579416	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	219	1254	1	ENST00000269305.4:c.271dup	p.Trp91LeufsTer58	p.W91Lfs*58	ENST00000269305	NM_001126112.2	91	tgg/tTgg																																																																															
MSI2	124540	MSKCC	GRCh37	17	55752386	55752386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1395	135	1569	0	ENST00000284073.2:c.844G>A	p.Val282Ile	p.V282I	ENST00000284073	NM_138962.2	282	Gtc/Atc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	221	962	0	ENST00000349310.3:c.155T>G	p.Leu52Arg	p.L52R	ENST00000349310	NM_001014432.1	52	cTc/cGc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061189	38061205	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAAGCGCTTCTGGCG	TTGAAGCGCTTCTGGCG	AGAA			P-0054217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	151	724	2	ENST00000250448.2:c.784_800delinsTTCT	p.Arg262PhefsTer55	p.R262Ffs*55	ENST00000250448	NM_004496.3	262	CGCCAGAAGCGCTTCAAg/TTCTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579329	7579329	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912658		P-0054218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	161	926	0	ENST00000269305.4:c.358A>G	p.Lys120Glu	p.K120E	ENST00000269305	NM_001126112.2	120	Aag/Gag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845580	151845580	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1287135873		P-0054218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	46	789	0	ENST00000262189.6:c.13432C>T	p.Arg4478Ter	p.R4478*	ENST00000262189	NM_170606.2	4478	Cga/Tga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060679	38060680	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCT			P-0054218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1463	123	1312	0	ENST00000250448.2:c.1306_1309dup	p.Leu437GlnfsTer122	p.L437Qfs*122	ENST00000250448	NM_004496.3	437	ctg/cAGCCtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0054247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	204	403	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68353904	68353904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	33	379	0	ENST00000487270.1:c.739G>A	p.Glu247Lys	p.E247K	ENST00000487270	NM_133509.3	247	Gag/Aag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69031699	69031699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	36	500	0	ENST00000288368.4:c.3454C>T	p.His1152Tyr	p.H1152Y	ENST00000288368	NM_024870.2	1152	Cat/Tat																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211431	98211431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1291	71	907	0	ENST00000331920.6:c.3724G>A	p.Glu1242Lys	p.E1242K	ENST00000331920	NM_000264.3	1242	Gag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108180978	108180978	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	95	295	0	ENST00000278616.4:c.5856del	p.Phe1952LeufsTer38	p.F1952Lfs*38	ENST00000278616	NM_000051.3	1952	Ttt/tt																																																																															
CCND2	894	MSKCC	GRCh37	12	4385255	4385255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	71	618	0	ENST00000261254.3:c.280C>T	p.Pro94Ser	p.P94S	ENST00000261254	NM_001759.3	94	Ccg/Tcg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858660	9858660	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	45	559	0	ENST00000330684.3:c.2741G>C	p.Arg914Thr	p.R914T	ENST00000330684	NM_001134407.1	914	aGa/aCa																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031509	11031509	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0054247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1605	87	1096	0	ENST00000327064.4:c.1425-1G>C		p.X475_splice	ENST00000327064	NM_199141.1	475																																																																																
PIK3R2	5296	MSKCC	GRCh37	19	18277989	18277989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1263	110	734	0	ENST00000222254.8:c.1609G>A	p.Glu537Lys	p.E537K	ENST00000222254	NM_005027.3	537	Gag/Aag																																																																															
CIC	23152	MSKCC	GRCh37	19	42797843	42797843	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1364	137	1159	0	ENST00000575354.2:c.3895C>G	p.Pro1299Ala	p.P1299A	ENST00000575354	NM_015125.3	1299	Cca/Gca																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89456452	89456452	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	28	346	0	ENST00000336596.2:c.1628T>C	p.Val543Ala	p.V543A	ENST00000336596	NM_005233.5	543	gTc/gCc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638177	176638177	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	184	679	0	ENST00000439151.2:c.2777G>C	p.Arg926Pro	p.R926P	ENST00000439151	NM_022455.4	926	cGg/cCg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205638	38205638	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	54	736	0	ENST00000317025.8:c.52C>T	p.Gln18Ter	p.Q18*	ENST00000317025	NM_023034.1	18	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0054251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	156	392	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0054251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	78	157	0				ENST00000310581	NM_198253.2																																																																																	
ESR1	2099	MSKCC	GRCh37	6	152265627	152265627	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	173	382	0	ENST00000206249.3:c.1080G>T	p.Trp360Cys	p.W360C	ENST00000206249	NM_000125.3	360	tgG/tgT																																																																															
TP53	7157	MSKCC	GRCh37	17	7579406	7579406	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	473	928	1	ENST00000269305.4:c.281C>A	p.Ser94Ter	p.S94*	ENST00000269305	NM_001126112.2	94	tCa/tAa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911435	134911435	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	162	473	0	ENST00000398015.3:c.1900T>C	p.Tyr634His	p.Y634H	ENST00000398015	NM_004441.4	634	Tac/Cac																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175958511	175958511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	64	382	0	ENST00000367669.3:c.1834G>A	p.Glu612Lys	p.E612K	ENST00000367669	NM_022457.5	612	Gaa/Aaa																																																																															
FH	2271	MSKCC	GRCh37	1	241661271	241661271	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0054251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	102	386	0	ENST00000366560.3:c.1391-1G>C		p.X464_splice	ENST00000366560	NM_000143.3	464																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72984803	72984803	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	147	696	0	ENST00000268489.5:c.2781del	p.Met928Ter	p.M928*	ENST00000268489	NM_006885.3	927	ctG/ct																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656836	45656836	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	166	705	0	ENST00000407780.3:c.320A>T	p.Asp107Val	p.D107V	ENST00000407780	NM_001283052.1	107	gAc/gTc																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182665361	182665361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	73	248	1	ENST00000292782.4:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000292782	NM_020640.2	194	Gac/Tac																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156554	55156554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	171	609	0	ENST00000257290.5:c.2955C>A	p.Asp985Glu	p.D985E	ENST00000257290	NM_006206.4	985	gaC/gaA																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066647	94066647	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	184	527	0	ENST00000369303.4:c.1112G>T	p.Arg371Leu	p.R371L	ENST00000369303	NM_004440.3	371	cGg/cTg																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38545413	38545416	+	missense_variant,splice_region_variant	Missense_Mutation	ONP	CAAC	CAAC	AAAA			P-0054251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	181	607	1	ENST00000299084.4:c.27_30delinsAAAA	p.Asp9_Asn10delinsGluLys	p.D9_N10delinsEK	ENST00000299084	NM_152594.2	9	gaCAAC/gaAAAA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249007	+	missense_variant	Missense_Mutation	ONP	GCG	GCG	TCT			P-0054252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	43	684	0	ENST00000275493.2:c.2303_2305delinsTCT	p.Ser768_Val769delinsIleLeu	p.S768_V769delinsIL	ENST00000275493	NM_005228.3	768	aGCGtg/aTCTtg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31387983	31387983	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	25	265	0	ENST00000328111.2:c.1784G>T	p.Gly595Val	p.G595V	ENST00000328111	NM_006892.3	595	gGc/gTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857891	9857891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	142	707	0	ENST00000330684.3:c.3510C>A	p.Asn1170Lys	p.N1170K	ENST00000330684	NM_001134407.1	1170	aaC/aaA																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139440186	139440186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	15	63	0	ENST00000277541.6:c.53C>T	p.Ala18Val	p.A18V	ENST00000277541	NM_017617.3	18	gCc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	71	352	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0054254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	135	599	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
INSR	3643	MSKCC	GRCh37	19	7119463	7119463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	109	600	0	ENST00000302850.5:c.3791G>A	p.Arg1264Lys	p.R1264K	ENST00000302850	NM_000208.2	1264	aGa/aAa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112344	115112344	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0054255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	47	109	0	ENST00000257566.3:c.1396A>T	p.Lys466Ter	p.K466*	ENST00000257566	NM_016569.3	466	Aag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0054255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	124	841	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713925	30713925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	90	490	0	ENST00000359013.4:c.1325G>A	p.Gly442Glu	p.G442E	ENST00000359013	NM_001024847.2	442	gGg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112175757	112175758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	26	274	0	ENST00000257430.4:c.4467dup	p.His1490ThrfsTer24	p.H1490Tfs*24	ENST00000257430	NM_000038.5	1489	tta/ttAa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932251	39932251	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	78	1110	0	ENST00000378444.4:c.2348A>T	p.Lys783Met	p.K783M	ENST00000378444	NM_001123385.1	783	aAg/aTg																																																																															
AR	367	MSKCC	GRCh37	X	66765255	66765255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	27	620	0	ENST00000374690.3:c.267G>T	p.Gln89His	p.Q89H	ENST00000374690	NM_000044.3	89	caG/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0054337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	332	604	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0054337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	143	255	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39250323	39250323	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	137	503	0	ENST00000402219.2:c.1246C>A	p.Gln416Lys	p.Q416K	ENST00000402219	NM_005633.3	416	Caa/Aaa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526648	31526648	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	239	580	0	ENST00000344624.3:c.392del	p.Pro131GlnfsTer15	p.P131Qfs*15	ENST00000344624		131	cCa/ca																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519922		P-0054356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	293	568	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484634	57484737	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTAGGATGCTGTGGGCTTGGCTGTTCGTAAAGAACGCTTTGCTTCTGTGTTGTTAGGGATCAGGGTCGCTGCTCACGCTCTTGGCTTTGCTCTCTTTGGTTAA	GGTAGGATGCTGTGGGCTTGGCTGTTCGTAAAGAACGCTTTGCTTCTGTGTTGTTAGGGATCAGGGTCGCTGCTCACGCTCTTGGCTTTGCTCTCTTTGGTTAA	-			P-0054356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1219	148	506	0	ENST00000371085.3:c.718+1_719-1del		p.X240_splice	ENST00000371085	NM_000516.4	240																																																																																
GNAS	2778	MSKCC	GRCh37	20	57484858	57485003	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTTTGTGGAGTGACCGCCCACCCCCTGCGCTTGCCCAGGAGGCCCTGGTCTGCACTGTTTATAGAGAAGAACCCCGTGCAAGCATTCCAGACCCCTGGCCGAAAGCGCGCTTCTCCCAAGCATTCACACGGCCTCCCTTCTTGT	AGGTTTGTGGAGTGACCGCCCACCCCCTGCGCTTGCCCAGGAGGCCCTGGTCTGCACTGTTTATAGAGAAGAACCCCGTGCAAGCATTCCAGACCCCTGGCCGAAAGCGCGCTTCTCCCAAGCATTCACACGGCCTCCCTTCTTGT	-			P-0054356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1171	165	490	0	ENST00000371085.3:c.839+1_840-1del		p.X280_splice	ENST00000371085	NM_000516.4	280																																																																																
GNAS	2778	MSKCC	GRCh37	20	57485136	57485387	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGTGTATGGCTTCCACTCTTGCTGGCTGTTCATTGCGGTGGTTCTTTTTCAAACGGTCAGGCTGAAAACCCCCATCCCCCTCCCACCACCAAACCATAAAGGATCTATAAGAGAAGCAAGAAAAACGCACTCCCACTAATTCTCATATGGAAAAATCAGGGTTTTGAAGACTTCAGGAGCTACAGAGATGCTAGCACCCCAGCTCTGCTTGAATTTTAAATTACATTAATATGTATTCCCTTTTTATATA	GGTGTGTATGGCTTCCACTCTTGCTGGCTGTTCATTGCGGTGGTTCTTTTTCAAACGGTCAGGCTGAAAACCCCCATCCCCCTCCCACCACCAAACCATAAAGGATCTATAAGAGAAGCAAGAAAAACGCACTCCCACTAATTCTCATATGGAAAAATCAGGGTTTTGAAGACTTCAGGAGCTACAGAGATGCTAGCACCCCAGCTCTGCTTGAATTTTAAATTACATTAATATGTATTCCCTTTTTATATA	-			P-0054356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	139	287	0	ENST00000371085.3:c.970+1_971-1del		p.X324_splice	ENST00000371085	NM_000516.4	324																																																																																
NF1	4763	MSKCC	GRCh37	17	29586056	29586056	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	100	316	0	ENST00000358273.4:c.4339C>T	p.Gln1447Ter	p.Q1447*	ENST00000358273	NM_001042492.2	1447	Cag/Tag																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2221345	2221347	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0054356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1517	136	828	0	ENST00000326181.6:c.432_434del	p.Thr145del	p.T145del	ENST00000326181	NM_032271.2	143	atCACc/atc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713340	40713340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1246	129	600	2	ENST00000373198.4:c.4175G>A	p.Arg1392His	p.R1392H	ENST00000373198	NM_133170.3	1392	cGt/cAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974760	21974760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	103	232	0	ENST00000304494.5:c.67G>T	p.Gly23Cys	p.G23C	ENST00000304494	NM_000077.4	23	Ggt/Tgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485456	57485736	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGAGTCGAGCCTGTCTTTAGTTTCCTCTCTTGTTCCTCCTCTTTTTCTCATGGATGTAAATTTACTTAATTCCAAATTCAGGGGTTCAGCTACCCAGTTCCATGGTTTTAGTTCACGCACATCCAGTGTGGATTTGAGCTCTTTGCGCCCCTCTTTTTGCTTTTGTTTTCATATGACATCAGAGGCTGGCTGACAGCCGTCCCTGGTAGGTGTCCCCATCAGGGATAGGGTGGTTCCTGGCGAGGGTGTCACTGACAAGTCCCCTTGTTTGTGCCCGCA	GGTGAGTCGAGCCTGTCTTTAGTTTCCTCTCTTGTTCCTCCTCTTTTTCTCATGGATGTAAATTTACTTAATTCCAAATTCAGGGGTTCAGCTACCCAGTTCCATGGTTTTAGTTCACGCACATCCAGTGTGGATTTGAGCTCTTTGCGCCCCTCTTTTTGCTTTTGTTTTCATATGACATCAGAGGCTGGCTGACAGCCGTCCCTGGTAGGTGTCCCCATCAGGGATAGGGTGGTTCCTGGCGAGGGTGTCACTGACAAGTCCCCTTGTTTGTGCCCGCA	-			P-0054356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	124	281	0	ENST00000371085.3:c.1038+1_1039-1del		p.X346_splice	ENST00000371085	NM_000516.4	346																																																																																
GNAS	2778	MSKCC	GRCh37	20	57484479	57484575	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	GTAAGCCAACTGTTACCTTTTTATATAACAGAGATCATGGTTTCTTGACATTCACCCCAGTCCCTCTGGAATAACCAGCTGTCCTCCTCCCCACCAG	GTAAGCCAACTGTTACCTTTTTATATAACAGAGATCATGGTTTCTTGACATTCACCCCAGTCCCTCTGGAATAACCAGCTGTCCTCCTCCCCACCAG	-			P-0054356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	71	381	0	ENST00000371085.3:c.659+1_660-1del		p.X220_splice	ENST00000371085	NM_000516.4	220																																																																																
GNAS	2778	MSKCC	GRCh37	20	57478641	57478726	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	GTACGTGCTGGCTCCTTGTGCTGTCTGTCTTGTAGCGCCCTCCCAGCCAGTGCTGTTCCCTGACCGCTTTGCTAAATCATTTTCAG	GTACGTGCTGGCTCCTTGTGCTGTCTGTCTTGTAGCGCCCTCCCAGCCAGTGCTGTTCCCTGACCGCTTTGCTAAATCATTTTCAG	-			P-0054356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1129	111	493	0	ENST00000371085.3:c.312+1_313-1del		p.X104_splice	ENST00000371085	NM_000516.4	104																																																																																
TET2	54790	MSKCC	GRCh37	4	106156087	106156087	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	111	246	0	ENST00000380013.4:c.988G>C	p.Glu330Gln	p.E330Q	ENST00000380013	NM_001127208.2	330	Gag/Cag																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115276721	115276721	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	31	249	0	ENST00000438362.2:c.738T>G	p.Ile246Met	p.I246M	ENST00000438362	NM_001242891.1	246	atT/atG																																																																															
PGR	5241	MSKCC	GRCh37	11	100998697	100998697	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1368	142	798	0	ENST00000325455.5:c.1105C>A	p.Pro369Thr	p.P369T	ENST00000325455	NM_001202474.3	369	Ccc/Acc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81960710	81960711	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0054356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	305	564	1	ENST00000359376.3:c.2441_2442delinsTT	p.Arg814Ile	p.R814I	ENST00000359376	NM_002661.3	814	aGG/aTT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577595	7577608	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CAGTCAGAGCCAAC	CAGTCAGAGCCAAC	-			P-0054356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	172	483	0	ENST00000269305.4:c.673_686del	p.Val225TyrfsTer10	p.V225Yfs*10	ENST00000269305	NM_001126112.2	225	GTTGGCTCTGACTGt/t																																																																															
NF1	4763	MSKCC	GRCh37	17	29653265	29653265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	113	231	0	ENST00000358273.4:c.5263A>G	p.Ile1755Val	p.I1755V	ENST00000358273	NM_001042492.2	1755	Att/Gtt																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40459696	40459696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	312	656	0	ENST00000345506.4:c.1861G>A	p.Asp621Asn	p.D621N	ENST00000345506	NM_003152.3	621	Gac/Aac																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40460198	40460198	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0054356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	247	484	1	ENST00000345506.4:c.1909G>T	p.Glu637Ter	p.E637*	ENST00000345506	NM_003152.3	637	Gaa/Taa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303065	15303065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2226	514	1122	0	ENST00000263388.2:c.385G>T	p.Ala129Ser	p.A129S	ENST00000263388	NM_000435.2	129	Gcc/Tcc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39721182	39721182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	94	408	0	ENST00000361337.2:c.685C>T	p.Pro229Ser	p.P229S	ENST00000361337	NM_003286.2	229	Cca/Tca																																																																															
ROS1	6098	MSKCC	GRCh37	6	117718109	117718109	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	81	425	0	ENST00000368508.3:c.748T>G	p.Phe250Val	p.F250V	ENST00000368508	NM_002944.2	250	Ttt/Gtt																																																																															
CDK6	1021	MSKCC	GRCh37	7	92404041	92404041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	89	363	0	ENST00000265734.4:c.338C>T	p.Pro113Leu	p.P113L	ENST00000265734	NM_001259.6	113	cCa/cTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	35	304	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609957	81609957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	29	368	0	ENST00000298171.2:c.1555C>T	p.Arg519Cys	p.R519C	ENST00000298171	NM_000369.2	519	Cgc/Tgc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155367	185155367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs902931460		P-0054357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	79	340	0	ENST00000265026.3:c.608C>T	p.Thr203Met	p.T203M	ENST00000265026	NM_004721.4	203	aCg/aTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11182133	11182133	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	152	693	0	ENST00000361445.4:c.6713G>C	p.Gly2238Ala	p.G2238A	ENST00000361445	NM_004958.3	2238	gGc/gCc																																																																															
HIST2H3D	653604	MSKCC	GRCh37	1	149784831	149784837	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCTC	CCCGCTC	-			P-0054357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	28	271	0	ENST00000331491.1:c.400_406del	p.Glu134ProfsTer?	p.E134Pfs*?	ENST00000331491	NM_001123375.2	134	GAGCGGGcc/cc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573646	48573662	+	frameshift_variant	Frame_Shift_Del	DEL	CATTGGATGGGAGGCTT	CATTGGATGGGAGGCTT	-			P-0054357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	18	298	0	ENST00000342988.3:c.232_248del	p.Leu78GlyfsTer20	p.L78Gfs*20	ENST00000342988	NM_005359.5	77	aCATTGGATGGGAGGCTT/a																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622064	1622064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	78	783	0	ENST00000344749.5:c.811C>T	p.His271Tyr	p.H271Y	ENST00000344749	NM_001136139.2	271	Cac/Tac																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839872	27839872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	42	515	0	ENST00000328488.2:c.222G>C	p.Glu74Asp	p.E74D	ENST00000328488	NM_003533.2	74	gaG/gaC																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797222	32797222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	78	692	0	ENST00000374899.4:c.1887C>G	p.Ile629Met	p.I629M	ENST00000374899	NM_018833.2	629	atC/atG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0054359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	345	378	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0054359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	569	758	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519925		P-0054359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	233	504	0	ENST00000263967.3:c.1357G>C	p.Glu453Gln	p.E453Q	ENST00000263967	NM_006218.2	453	Gaa/Caa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78931486	78931486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	293	919	0	ENST00000306801.3:c.3433C>T	p.Arg1145Trp	p.R1145W	ENST00000306801	NM_020761.2	1145	Cgg/Tgg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115252321	115252321	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	149	358	0	ENST00000369535.4:c.319G>C	p.Asp107His	p.D107H	ENST00000369535	NM_002524.4	107	Gat/Cat																																																																															
PARP1	142	MSKCC	GRCh37	1	226578292	226578292	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	415	713	0	ENST00000366794.5:c.436C>G	p.Pro146Ala	p.P146A	ENST00000366794	NM_001618.3	146	Ccg/Gcg																																																																															
MGA	23269	MSKCC	GRCh37	15	42040918	42040918	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	126	664	0	ENST00000219905.7:c.5296C>G	p.Pro1766Ala	p.P1766A	ENST00000219905	NM_001164273.1	1766	Cca/Gca																																																																															
CD276	80381	MSKCC	GRCh37	15	73996705	73996705	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	21	124	0	ENST00000318443.5:c.1261G>C	p.Asp421His	p.D421H	ENST00000318443	NM_001024736.1	421	Gat/Cat																																																																															
AXIN1	8312	MSKCC	GRCh37	16	341287	341287	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1450	141	1061	0	ENST00000262320.3:c.2197G>C	p.Glu733Gln	p.E733Q	ENST00000262320	NM_003502.3	733	Gag/Cag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343557	343748	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGGTTAGGGGGTTGGGAGCTGGGTGGGGTGGCATGGTGGGGTCTTGGATGAAGAGGTGGGAGGGCTGCACGGAGGTCCGGAGCTGAGGGCCGGCCCAGGGGTGCTCAAGGGACAAGGGTCTGGAGTTCTCATGGGGCTGTGGCTTCCTCGTCCCCGAAGACCTTGGGGAACAAGAGAACAAGTTGTGACTG	TGGGTTAGGGGGTTGGGAGCTGGGTGGGGTGGCATGGTGGGGTCTTGGATGAAGAGGTGGGAGGGCTGCACGGAGGTCCGGAGCTGAGGGCCGGCCCAGGGGTGCTCAAGGGACAAGGGTCTGGAGTTCTCATGGGGCTGTGGCTTCCTCGTCCCCGAAGACCTTGGGGAACAAGAGAACAAGTTGTGACTG	-			P-0054359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	76	767	0	ENST00000262320.3:c.1956-30_2117del		p.X652_splice	ENST00000262320	NM_003502.3	652																																																																																
NF1	4763	MSKCC	GRCh37	17	29592264	29592264	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	102	216	0	ENST00000358273.4:c.4742A>T	p.Lys1581Ile	p.K1581I	ENST00000358273	NM_001042492.2	1581	aAa/aTa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972830	25972830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	381	506	0	ENST00000435504.4:c.1595G>A	p.Gly532Glu	p.G532E	ENST00000435504		532	gGg/gAg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31019126	31019126	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0054359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	87	424	0	ENST00000375687.4:c.721C>G	p.Gln241Glu	p.Q241E	ENST00000375687	NM_015338.5	241	Caa/Gaa																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504060	186504063	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CAGG	CAGG	-			P-0054359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	206	235	0	ENST00000323963.5:c.625_627+1del		p.X209_splice	ENST00000323963		209																																																																																
KDR	3791	MSKCC	GRCh37	4	55955100	55955100	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	368	499	1	ENST00000263923.4:c.3445C>A	p.Gln1149Lys	p.Q1149K	ENST00000263923	NM_002253.2	1149	Cag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112177841	112177841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	52	251	0	ENST00000257430.4:c.6550G>A	p.Glu2184Lys	p.E2184K	ENST00000257430	NM_000038.5	2184	Gaa/Aaa																																																																															
HGF	3082	MSKCC	GRCh37	7	81372736	81372736	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	132	363	0	ENST00000222390.5:c.798G>T	p.Gln266His	p.Q266H	ENST00000222390	NM_000601.4	266	caG/caT																																																																															
MED12	9968	MSKCC	GRCh37	X	70357426	70357426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	427	790	0	ENST00000374080.3:c.5767G>T	p.Gly1923Ter	p.G1923*	ENST00000374080		1923	Gga/Tga																																																																															
ATRX	546	MSKCC	GRCh37	X	76939939	76939939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	279	601	0	ENST00000373344.5:c.809C>T	p.Pro270Leu	p.P270L	ENST00000373344	NM_000489.3	270	cCa/cTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0054363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	20	386	0	ENST00000256078.4:c.34_35delGGinsCT	p.Gly12Leu	p.G12L	ENST00000256078	NM_033360.2	12	GGt/CTt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114724366	114724366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053963-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			579	111	563	0	ENST00000543371.1:c.433C>T	p.His145Tyr	p.H145Y	ENST00000543371	NM_001198531.1	145	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0054105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	192	681	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0054105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	60	477	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	34	222	2	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	51	411	1	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga																																																																															
TET2	54790	MSKCC	GRCh37	4	106196261	106196261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	42	294	0	ENST00000380013.4:c.4594C>T	p.Gln1532Ter	p.Q1532*	ENST00000380013	NM_001127208.2	1532	Cag/Tag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046548	30046548	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	111	618	3	ENST00000331968.5:c.2635C>A	p.Gln879Lys	p.Q879K	ENST00000331968	NM_002742.2	879	Cag/Aag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843470	3843470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	73	555	1	ENST00000262367.5:c.1133G>A	p.Arg378Gln	p.R378Q	ENST00000262367	NM_004380.2	378	cGg/cAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120168	70120168	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	112	440	0	ENST00000245479.2:c.1171del	p.Gln391SerfsTer12	p.Q391Sfs*12	ENST00000245479	NM_000346.3	390	ggC/gg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604648	48604681	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTGTTGATGACCTTCGTCGCTTATGCATACTC	TGGTGTTGATGACCTTCGTCGCTTATGCATACTC	-			P-0054105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	42	329	0	ENST00000342988.3:c.1470_1503del	p.Val492Ter	p.V492*	ENST00000342988	NM_005359.5	490	atTGGTGTTGATGACCTTCGTCGCTTATGCATACTC/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	62	456	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	22	293	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579575	7579575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	115	852	0	ENST00000269305.4:c.112C>T	p.Gln38Ter	p.Q38*	ENST00000269305	NM_001126112.2	38	Caa/Taa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189849	66189849	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139793674		P-0054147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	36	578	1	ENST00000273854.3:c.3097G>A	p.Gly1033Arg	p.G1033R	ENST00000273854	NM_004439.5	1033	Gga/Aga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927978	178927986	+	inframe_deletion	In_Frame_Del	DEL	ACTGTCCAT	ACTGTCCAT	-			P-0054147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	45	350	0	ENST00000263967.3:c.1256_1264del	p.His419_Pro421del	p.H419_P421del	ENST00000263967	NM_006218.2	419	cACTGTCCATtg/ctg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578196	7578197	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCACC			P-0054147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	66	879	0	ENST00000269305.4:c.648_652dup	p.Val218GlyfsTer31	p.V218Gfs*31	ENST00000269305	NM_001126112.2	218	gtg/gGGTGGtg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046253	128046253	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	51	584	0	ENST00000285398.2:c.1010T>C	p.Val337Ala	p.V337A	ENST00000285398	NM_000122.1	337	gTc/gCc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151833963	151833963	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	56	640	0	ENST00000262189.6:c.14690T>G	p.Ile4897Ser	p.I4897S	ENST00000262189	NM_170606.2	4897	aTt/aGt																																																																															
ATRX	546	MSKCC	GRCh37	X	76778771	76778771	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	25	617	0	ENST00000373344.5:c.6808G>T	p.Glu2270Ter	p.E2270*	ENST00000373344	NM_000489.3	2270	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579319	7579319	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	338	752	0	ENST00000269305.4:c.368del	p.Thr123IlefsTer47	p.T123Ifs*47	ENST00000269305	NM_001126112.2	123	aCt/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0054151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	368	749	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18277980	18277980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	304	702	0	ENST00000222254.8:c.1600G>A	p.Glu534Lys	p.E534K	ENST00000222254	NM_005027.3	534	Gag/Aag																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728714	190728714	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	82	285	0	ENST00000441310.2:c.2102T>G	p.Phe701Cys	p.F701C	ENST00000441310	NM_000534.4	701	tTt/tGt																																																																															
INHA	3623	MSKCC	GRCh37	2	220440078	220440078	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	208	1099	0	ENST00000243786.2:c.931C>G	p.Pro311Ala	p.P311A	ENST00000243786	NM_002191.3	311	Ccc/Gcc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508856	106508856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	184	760	1	ENST00000359195.3:c.850G>A	p.Glu284Lys	p.E284K	ENST00000359195	NM_002649.2	284	Gaa/Aaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060780	38060780	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	343	1065	0	ENST00000250448.2:c.1209C>G	p.Asn403Lys	p.N403K	ENST00000250448	NM_004496.3	403	aaC/aaG																																																																															
NPM1	4869	MSKCC	GRCh37	5	170819932	170819934	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-			P-0054154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	116	360	0	ENST00000296930.5:c.479_481del	p.Ala160del	p.A160del	ENST00000296930	NM_002520.6	158	ctTGCt/ctt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0054155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	187	900	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0054155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	62	499	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149290746	149290746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	140	652	0	ENST00000360632.3:c.473C>T	p.Ala158Val	p.A158V	ENST00000360632	NM_015472.4	158	gCg/gTg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56488226	56488226	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	169	737	2	ENST00000267101.3:c.1745G>T	p.Gly582Val	p.G582V	ENST00000267101	NM_001982.3	582	gGg/gTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0054158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	150	597	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281506	49281506	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	59	837	0	ENST00000282018.3:c.553A>T	p.Thr185Ser	p.T185S	ENST00000282018	NM_020377.2	185	Aca/Tca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244164	5244164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1294	217	1289	0	ENST00000357368.4:c.1318G>A	p.Ala440Thr	p.A440T	ENST00000357368	NM_002850.3	440	Gcg/Acg																																																																															
POLE	5426	MSKCC	GRCh37	12	133235975	133235975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	95	987	0	ENST00000320574.5:c.3181G>T	p.Ala1061Ser	p.A1061S	ENST00000320574	NM_006231.2	1061	Gcc/Tcc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2220660	2220660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1136	237	1036	0	ENST00000326181.6:c.277C>T	p.Arg93Cys	p.R93C	ENST00000326181	NM_032271.2	93	Cgc/Tgc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50828231	50828231	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	109	683	0	ENST00000398568.2:c.2569G>T	p.Glu857Ter	p.E857*	ENST00000398568	NM_001042412.1	857	Gag/Tag																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285692	87285692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1175	81	1081	1	ENST00000277120.3:c.29C>A	p.Pro10His	p.P10H	ENST00000277120		10	cCc/cAc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139820193	139820193	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1092	64	1030	1	ENST00000247668.2:c.1346C>G	p.Pro449Arg	p.P449R	ENST00000247668	NM_021138.3	449	cCc/cGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0054163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	117	516	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0054163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	338	943	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467632	66467632	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	57	469	0	ENST00000273854.3:c.637G>T	p.Ala213Ser	p.A213S	ENST00000273854	NM_004439.5	213	Gct/Tct																																																																															
STK11	6794	MSKCC	GRCh37	19	1221319	1221319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	606	729	0	ENST00000326873.7:c.842C>T	p.Pro281Leu	p.P281L	ENST00000326873	NM_000455.4	281	cCg/cTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962834	2962834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	136	755	0	ENST00000396946.4:c.2074G>A	p.Val692Met	p.V692M	ENST00000396946	NM_032415.4	692	Gtg/Atg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221318	1221319	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0054190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	576	728	1	ENST00000326873.7:c.841_842delinsT	p.Pro281CysfsTer6	p.P281Cfs*6	ENST00000326873	NM_000455.4	281	CCg/Tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0054190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	347	782	1	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8504384	8504384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	252	541	0	ENST00000356435.5:c.1699G>T	p.Gly567Trp	p.G567W	ENST00000356435		567	Ggg/Tgg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420245	88420245	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	239	607	0	ENST00000360948.2:c.2441G>T	p.Arg814Leu	p.R814L	ENST00000360948	NM_001012338.2	814	cGg/cTg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	364588	364588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	200	891	1	ENST00000262320.3:c.974G>A	p.Ser325Asn	p.S325N	ENST00000262320	NM_003502.3	325	aGc/aAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89345505	89345505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	211	506	1	ENST00000301030.4:c.7445C>A	p.Pro2482Gln	p.P2482Q	ENST00000301030	NM_001256183.1	2482	cCg/cAg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610482	10610499	+	inframe_deletion	In_Frame_Del	DEL	CAGCTGCTGGCTGAGCCG	CAGCTGCTGGCTGAGCCG	-			P-0054190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	375	823	1	ENST00000171111.5:c.211_228del	p.Arg71_Leu76del	p.R71_L76del	ENST00000171111	NM_203500.1	71	CGGCTCAGCCAGCAGCTG/-																																																																															
KDR	3791	MSKCC	GRCh37	4	55970825	55970825	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	207	524	0	ENST00000263923.4:c.1972C>T	p.Gln658Ter	p.Q658*	ENST00000263923	NM_002253.2	658	Cag/Tag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120638	94120638	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	240	526	0	ENST00000369303.4:c.413T>C	p.Ile138Thr	p.I138T	ENST00000369303	NM_004440.3	138	aTa/aCa																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139566477	139566477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	418	823	0	ENST00000308874.7:c.736C>G	p.Gln246Glu	p.Q246E	ENST00000308874		246	Cag/Gag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0054198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	13	546	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0054198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	12	437	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	16	366	0	ENST00000342988.3:c.1255G>A	p.Gly419Arg	p.G419R	ENST00000342988	NM_005359.5	419	Ggg/Agg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			205	94	595	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			201	81	356	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			259	55	423	0	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			65	16	207	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			73	28	306	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			158	44	285	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			323	125	812	4	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			188	51	438	3	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			130	155	498	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123788	11123788	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			218	96	508	0	ENST00000344626.4:c.2438C>T	p.Ser813Leu	p.S813L	ENST00000344626	NM_003072.3	813	tCa/tTa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248773	212248773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			78	23	237	0	ENST00000342788.4:c.3494C>T	p.Pro1165Leu	p.P1165L	ENST00000342788	NM_005235.2	1165	cCa/cTa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806180	1806181	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775260779		P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	107	898	1	ENST00000260795.2:c.1206dup	p.Lys403GlnfsTer93	p.K403Qfs*93	ENST00000260795		400	agc/agCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579439	7579439	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201717599		P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			383	140	769	1	ENST00000269305.4:c.248C>T	p.Ala83Val	p.A83V	ENST00000269305	NM_001126112.2	83	gCg/gTg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199945	138199945	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	77	468	1	ENST00000237289.4:c.1368delG	p.Pro457LeufsTer20	p.P457Lfs*20	ENST00000237289	NM_001270507.1	455	Ggg/gg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9783347	9783347	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148984508		P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			253	100	574	0	ENST00000377346.4:c.2591C>T	p.Pro864Leu	p.P864L	ENST00000377346	NM_005026.3	864	cCg/cTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319965	8319965	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs141403124		P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			76	35	225	0	ENST00000356435.5:c.5536G>A	p.Ala1846Thr	p.A1846T	ENST00000356435		1846	Gcg/Acg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			268	84	564	9	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916730	178916730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			87	37	340	0	ENST00000263967.3:c.117G>T	p.Glu39Asp	p.E39D	ENST00000263967	NM_006218.2	39	gaG/gaT																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			379	136	759	4	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	351	885	1	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953115	81953115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			185	69	342	0	ENST00000359376.3:c.2081G>A	p.Arg694His	p.R694H	ENST00000359376	NM_002661.3	694	cGc/cAc																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458270	12458270	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	100	501	0	ENST00000287820.6:c.892del	p.Leu298CysfsTer38	p.L298Cfs*38	ENST00000287820	NM_015869.4	296	aCc/ac																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366987	40366987	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	154	856	1	ENST00000397332.2:c.210del	p.Thr71ArgfsTer69	p.T71Rfs*69	ENST00000397332	NM_001033082.2	70	ccC/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223175	36223175	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			546	180	1039	1	ENST00000222270.7:c.5730del	p.Arg1911AspfsTer23	p.R1911Dfs*23	ENST00000222270	NM_014727.1	1909	Ccc/cc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99452077	99452077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			183	90	370	0	ENST00000268035.6:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000268035	NM_000875.3	471	Cgc/Tgc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027436	48027436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			160	41	394	0	ENST00000234420.5:c.2314C>T	p.Arg772Trp	p.R772W	ENST00000234420	NM_000179.2	772	Cgg/Tgg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133968	41133968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	29	561	1	ENST00000379561.5:c.1660C>T	p.Arg554Cys	p.R554C	ENST00000379561	NM_002015.3	554	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27022998	27022999	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			43	21	49	0	ENST00000324856.7:c.110dup	p.Glu38ArgfsTer73	p.E38Rfs*73	ENST00000324856	NM_006015.4	35	gcg/gcGg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467774	50467774	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148169768		P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			354	23	573	1	ENST00000331340.3:c.1009G>A	p.Gly337Ser	p.G337S	ENST00000331340	NM_006060.4	337	Ggt/Agt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100452	8100452	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	149	924	2	ENST00000346208.3:c.431delG	p.Gly144AlafsTer51	p.G144Afs*51	ENST00000346208		142	tcG/tc																																																																															
CD79B	974	MSKCC	GRCh37	17	62006636	62006636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			287	86	701	4	ENST00000392795.3:c.643C>T	p.Arg215Trp	p.R215W	ENST00000392795	NM_001039933.1	215	Cgg/Tgg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59820423	59820423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			169	69	416	0	ENST00000259008.2:c.2330G>A	p.Arg777His	p.R777H	ENST00000259008	NM_032043.2	777	cGt/cAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923438	9923438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			218	79	568	1	ENST00000330684.3:c.1849G>A	p.Val617Met	p.V617M	ENST00000330684	NM_001134407.1	617	Gtg/Atg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905545	50905545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	130	973	1	ENST00000440232.2:c.673C>T	p.Arg225Cys	p.R225C	ENST00000440232	NM_002691.3	225	Cgt/Tgt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112472	115112472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145432134		P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	185	735	0	ENST00000257566.3:c.1268G>A	p.Arg423Gln	p.R423Q	ENST00000257566	NM_016569.3	423	cGg/cAg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740393	145740393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			417	188	943	0	ENST00000428558.2:c.1547C>T	p.Ala516Val	p.A516V	ENST00000428558	NM_004260.3	516	gCg/gTg																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699457	117699457	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			110	103	449	0	ENST00000369458.3:c.184A>G	p.Ile62Val	p.I62V	ENST00000369458	NM_024626.3	62	Atc/Gtc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741628	17741628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			178	106	535	1	ENST00000250003.3:c.299C>T	p.Ala100Val	p.A100V	ENST00000250003	NM_002478.4	100	gCg/gTg																																																																															
MGA	23269	MSKCC	GRCh37	15	41988629	41988629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			132	41	436	0	ENST00000219905.7:c.1421G>A	p.Cys474Tyr	p.C474Y	ENST00000219905	NM_001164273.1	474	tGt/tAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42003375	42003375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			202	72	375	0	ENST00000219905.7:c.2912G>A	p.Arg971Gln	p.R971Q	ENST00000219905	NM_001164273.1	971	cGg/cAg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43720366	43720366	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			176	90	551	0	ENST00000382044.4:c.3676G>A	p.Gly1226Arg	p.G1226R	ENST00000382044	NM_001141980.1	1226	Gga/Aga																																																																															
BLM	641	MSKCC	GRCh37	15	91337570	91337570	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			125	32	267	0	ENST00000355112.3:c.3193A>G	p.Asn1065Asp	p.N1065D	ENST00000355112	NM_000057.2	1065	Aat/Gat																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639812	3639812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	154	871	0	ENST00000294008.3:c.3827G>A	p.Ser1276Asn	p.S1276N	ENST00000294008	NM_032444.2	1276	aGc/aAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829688	72829688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			210	99	722	0	ENST00000268489.5:c.6893G>A	p.Arg2298Lys	p.R2298K	ENST00000268489	NM_006885.3	2298	aGg/aAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346141	89346141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			97	31	382	0	ENST00000301030.4:c.6809C>T	p.Ala2270Val	p.A2270V	ENST00000301030	NM_001256183.1	2270	gCc/gTc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119902	70119902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	67	650	2	ENST00000245479.2:c.904G>A	p.Gly302Ser	p.G302S	ENST00000245479	NM_000346.3	302	Ggc/Agc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1611797	1611797	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	191	902	0	ENST00000344749.5:c.1865A>G	p.Lys622Arg	p.K622R	ENST00000344749	NM_001136139.2	622	aAg/aGg																																																																															
INSR	3643	MSKCC	GRCh37	19	7123000	7123000	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			352	116	718	0	ENST00000302850.5:c.3259G>A	p.Val1087Met	p.V1087M	ENST00000302850	NM_000208.2	1087	Gtg/Atg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47205399	47205404	+	inframe_deletion	In_Frame_Del	DEL	GCTGCA	GCTGCA	-			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			403	99	497	0	ENST00000409792.3:c.11_16del	p.Leu4_Gln5del	p.L4_Q5del	ENST00000409792	NM_014159.6	4	cTGCAGCcg/ccg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928054	49928054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			370	45	620	3	ENST00000296474.3:c.3674C>T	p.Ala1225Val	p.A1225V	ENST00000296474	NM_002447.2	1225	gCt/gTt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71102878	71102878	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			250	122	368	0	ENST00000318789.4:c.329A>G	p.Gln110Arg	p.Q110R	ENST00000318789	NM_032682.5	110	cAg/cGg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902558	1902558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			410	135	799	0	ENST00000382891.5:c.181del	p.Val61SerfsTer19	p.V61Sfs*19	ENST00000382891	NM_133335.3	59	gaG/ga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66233123	66233123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			164	58	437	0	ENST00000273854.3:c.1876G>A	p.Ala626Thr	p.A626T	ENST00000273854	NM_004439.5	626	Gca/Aca																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515215	31515215	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			355	100	842	2	ENST00000344624.3:c.1170del	p.Glu391SerfsTer87	p.E391Sfs*87	ENST00000344624		390	aaA/aa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189499	56189499	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			127	46	349	0	ENST00000399503.3:c.4531A>G	p.Thr1511Ala	p.T1511A	ENST00000399503	NM_005921.1	1511	Aca/Gca																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066437	94066437	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			74	21	186	0	ENST00000369303.4:c.1322C>T	p.Ala441Val	p.A441V	ENST00000369303	NM_004440.3	441	gCa/gTa																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975350	13975350	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			235	73	469	1	ENST00000405192.2:c.537C>A	p.Ser179Arg	p.S179R	ENST00000405192	NM_001163147.1	179	agC/agA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151871274	151871274	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			178	59	410	0	ENST00000262189.6:c.9316G>T	p.Gly3106Cys	p.G3106C	ENST00000262189	NM_170606.2	3106	Ggt/Tgt																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194907	29194907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			421	188	837	1	ENST00000240100.2:c.821G>T	p.Gly274Val	p.G274V	ENST00000240100	NM_001394.6	274	gGg/gTg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738044	145738044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	164	915	0	ENST00000428558.2:c.2866C>T	p.Leu956Phe	p.L956F	ENST00000428558	NM_004260.3	956	Ctc/Ttc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507345	8507345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			169	31	341	0	ENST00000356435.5:c.1633G>A	p.Ala545Thr	p.A545T	ENST00000356435		545	Gcc/Acc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239939	98239939	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			200	77	420	0	ENST00000331920.6:c.1393T>C	p.Ser465Pro	p.S465P	ENST00000331920	NM_000264.3	465	Tcc/Ccc																																																																															
NBN	4683	MSKCC	GRCh37	8	90982641	90982641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047996-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			150	158	280	0	ENST00000265433.3:c.847C>T	p.Pro283Ser	p.P283S	ENST00000265433	NM_002485.4	283	Cct/Tct																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906928	32906928	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047996-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			788	109	341	0	ENST00000380152.3:c.1313A>T	p.Asp438Val	p.D438V	ENST00000380152		438	gAt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0053618-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			98	119	432	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89791020	89791020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053618-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			173	14	146	0	ENST00000336032.3:c.407G>A	p.Gly136Glu	p.G136E	ENST00000336032	NM_006813.2	136	gGa/gAa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361157	66361157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053618-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			157	26	360	0	ENST00000273854.3:c.1015G>A	p.Glu339Lys	p.E339K	ENST00000273854	NM_004439.5	339	Gaa/Aaa																																																																															
SMO	6608	MSKCC	GRCh37	7	128850857	128850857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053618-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			885	52	494	0	ENST00000249373.3:c.1704G>A	p.Met568Ile	p.M568I	ENST00000249373	NM_005631.4	568	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7574027	7574027	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882028		P-0053618-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	214	464	0	ENST00000269305.4:c.1000G>T	p.Gly334Trp	p.G334W	ENST00000269305	NM_001126112.2	334	Ggg/Tgg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640737	3640737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053618-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			618	52	407	0	ENST00000294008.3:c.2902G>C	p.Glu968Gln	p.E968Q	ENST00000294008	NM_032444.2	968	Gag/Cag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711918	89711918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053618-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			192	106	628	0	ENST00000371953.3:c.536G>C	p.Ser179Thr	p.S179T	ENST00000371953	NM_000314.4	179	aGc/aCc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572625	64572625	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053618-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			623	152	359	0	ENST00000337652.1:c.1246G>T	p.Ala416Ser	p.A416S	ENST00000337652	NM_130803.2	416	Gcc/Tcc																																																																															
POLE	5426	MSKCC	GRCh37	12	133245514	133245514	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053618-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			367	40	324	0	ENST00000320574.5:c.1806G>C	p.Glu602Asp	p.E602D	ENST00000320574	NM_006231.2	602	gaG/gaC																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023009	33023009	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053618-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			396	32	363	0	ENST00000300177.4:c.118C>T	p.Gln40Ter	p.Q40*	ENST00000300177	NM_001191322.1	40	Cag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42005538	42005538	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053618-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			218	120	540	0	ENST00000219905.7:c.3274G>T	p.Gly1092Ter	p.G1092*	ENST00000219905	NM_001164273.1	1092	Gga/Tga																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639366	3639366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053618-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			590	163	490	1	ENST00000294008.3:c.4273G>T	p.Asp1425Tyr	p.D1425Y	ENST00000294008	NM_032444.2	1425	Gac/Tac																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944174	81944174	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053618-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			436	121	503	0	ENST00000359376.3:c.1783G>T	p.Gly595Trp	p.G595W	ENST00000359376	NM_002661.3	595	Ggg/Tgg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288838	15288838	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053618-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			440	30	120	0	ENST00000263388.2:c.3901G>T	p.Gly1301Cys	p.G1301C	ENST00000263388	NM_000435.2	1301	Ggc/Tgc																																																																															
BARD1	580	MSKCC	GRCh37	2	215645844	215645844	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053618-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			276	21	670	0	ENST00000260947.4:c.754C>G	p.Pro252Ala	p.P252A	ENST00000260947	NM_000465.2	252	Cct/Gct																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510144	187510144	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053618-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			389	97	420	0	ENST00000441802.2:c.13369A>C	p.Asn4457His	p.N4457H	ENST00000441802	NM_005245.3	4457	Aat/Cat																																																																															
APC	324	MSKCC	GRCh37	5	112174823	112174823	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053618-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			128	11	248	0	ENST00000257430.4:c.3532G>T	p.Asp1178Tyr	p.D1178Y	ENST00000257430	NM_000038.5	1178	Gat/Tat																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372293	55372293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053618-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			494	27	528	0	ENST00000297316.4:c.983C>A	p.Pro328Gln	p.P328Q	ENST00000297316	NM_022454.3	328	cCg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0054001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	257	840	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	114	390	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27022914	27022945	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCGCCGCCAGCAGCCTGGGCAACCCGCCG	CCGCCGCCGCCAGCAGCCTGGGCAACCCGCCG	-			P-0054001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	12	24	0	ENST00000324856.7:c.31_62del	p.Ser11LeufsTer89	p.S11Lfs*89	ENST00000324856	NM_006015.4	7	cCCGCCGCCGCCAGCAGCCTGGGCAACCCGCCG/c																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575210	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0054001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	92	281	1	ENST00000342988.3:c.405_406dup	p.Val136GlufsTer12	p.V136Efs*12	ENST00000342988	NM_005359.5	135	cga/cGAga																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342812	87342812	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	49	496	1	ENST00000277120.3:c.1097A>T	p.Glu366Val	p.E366V	ENST00000277120		366	gAg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057781	27057781	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	C	C	TA			P-0054001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	179	842	0	ENST00000324856.7:c.1489delinsTA	p.Gln497Ter	p.Q497*	ENST00000324856	NM_006015.4	497	Caa/TAaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	16	397	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	34	1083	0	ENST00000269305.4:c.389T>G	p.Leu130Arg	p.L130R	ENST00000269305	NM_001126112.2	130	cTc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs17849781		P-0054009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	211	779	1	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028668	12028668	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	90	360	1	ENST00000353533.5:c.871T>C	p.Trp291Arg	p.W291R	ENST00000353533	NM_003010.3	291	Tgg/Cgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0054021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	133	305	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47143030	47143030	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	114	356	0	ENST00000409792.3:c.4933C>T	p.Gln1645Ter	p.Q1645*	ENST00000409792	NM_014159.6	1645	Caa/Taa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162156	47162156	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	92	353	0	ENST00000409792.3:c.3970C>T	p.Gln1324Ter	p.Q1324*	ENST00000409792	NM_014159.6	1324	Caa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860887	151860888	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGTT			P-0054021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	64	261	0	ENST00000262189.6:c.9770_9774dup	p.Ala3259AsnfsTer5	p.A3259Nfs*5	ENST00000262189	NM_170606.2	3258	-/AACAT																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0054023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	330	885	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108201089	108201089	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	52	319	0	ENST00000278616.4:c.7456C>T	p.Arg2486Ter	p.R2486*	ENST00000278616	NM_000051.3	2486	Cga/Tga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045136	47045136	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	470	343	0	ENST00000329236.7:c.2143C>T	p.Arg715Ter	p.R715*	ENST00000329236	NM_001204466.1	715	Cga/Tga																																																																															
CBL	867	MSKCC	GRCh37	11	119148861	119148887	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTTTTAATCAAAGGAACAATATGAA	TTTTTTTAATCAAAGGAACAATATGAA	-			P-0054024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	466	187	0	ENST00000264033.4:c.1096-13_1109del		p.X366_splice	ENST00000264033	NM_005188.3	366																																																																																
APC	324	MSKCC	GRCh37	5	112175122	112175124	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0054024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	36	171	0	ENST00000257430.4:c.3834_3836del	p.Ser1279del	p.S1279del	ENST00000257430	NM_000038.5	1277	ttATCa/tta																																																																															
MGA	23269	MSKCC	GRCh37	15	41988452	41988455	+	frameshift_variant	Frame_Shift_Del	DEL	CAAA	CAAA	-			P-0054042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	97	375	0	ENST00000219905.7:c.1246_1249delAACA	p.Asn416ValfsTer7	p.N416Vfs*7	ENST00000219905	NM_001164273.1	415	tCAAAc/tc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060912	38060912	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	133	605	0	ENST00000250448.2:c.1077delC	p.Ile360Ter	p.I360*	ENST00000250448	NM_004496.3	359	ccC/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578181	7578192	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCTCATAG	GGCGGCTCATAG	-			P-0054042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	155	689	0	ENST00000269305.4:c.657_668del	p.Tyr220_Pro223del	p.Y220_P223del	ENST00000269305	NM_001126112.2	219	ccCTATGAGCCGCCt/cct																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118347610	118347610	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	199	456	1	ENST00000534358.1:c.3247C>T	p.Arg1083Ter	p.R1083*	ENST00000534358	NM_005933.3	1083	Cga/Tga																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858456	57858456	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0054042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	237	484	0	ENST00000228682.2:c.194G>A	p.Gly65Asp	p.G65D	ENST00000228682	NM_005269.2	65	gGc/gAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920410	134920410	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	116	487	0	ENST00000398015.3:c.2225A>C	p.His742Pro	p.H742P	ENST00000398015	NM_004441.4	742	cAt/cCt																																																																															
MGA	23269	MSKCC	GRCh37	15	42041698	42041704	+	frameshift_variant	Frame_Shift_Del	DEL	TCCCTTC	TCCCTTC	GA			P-0054042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	96	402	1	ENST00000219905.7:c.5893_5899delinsGA	p.Ser1965GlufsTer14	p.S1965Efs*14	ENST00000219905	NM_001164273.1	1965	TCCCTTCag/GAag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830806	72830807	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0054043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	49	779	0	ENST00000268489.5:c.5774dupG	p.Gly1926TrpfsTer3	p.G1926Wfs*3	ENST00000268489	NM_006885.3	1925	ggt/ggGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720675	89720675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	59	436	0	ENST00000371953.3:c.826A>G	p.Asn276Asp	p.N276D	ENST00000371953	NM_000314.4	276	Aat/Gat																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670256	134670256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	24	503	0	ENST00000398015.3:c.167G>A	p.Arg56His	p.R56H	ENST00000398015	NM_004441.4	56	cGc/cAc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155870258	155870258	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	76	669	0	ENST00000368323.3:c.581A>G	p.Glu194Gly	p.E194G	ENST00000368323	NM_006912.5	194	gAg/gGg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661358	227661358	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	76	829	0	ENST00000305123.5:c.2097G>A	p.Trp699Ter	p.W699*	ENST00000305123	NM_005544.2	699	tgG/tgA																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123260408	123260408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	121	690	0	ENST00000358487.5:c.1493C>T	p.Ala498Val	p.A498V	ENST00000358487	NM_000141.4	498	gCg/gTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1279449	1279449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	160	1136	2	ENST00000310581.5:c.2087G>A	p.Arg696His	p.R696H	ENST00000310581	NM_198253.2	696	cGt/cAt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011162	12011163	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0054044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	28	298	0	ENST00000353533.5:c.572_573dup	p.Val192MetfsTer6	p.V192Mfs*6	ENST00000353533	NM_003010.3	190	aaa/aaATa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271274	38271274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2326	169	1030	1	ENST00000425967.3:c.2434C>A	p.Pro812Thr	p.P812T	ENST00000425967	NM_001174067.1	812	Ccc/Acc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250041	110250041	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	128	735	0	ENST00000374672.4:c.634T>C	p.Tyr212His	p.Y212H	ENST00000374672	NM_004235.4	212	Tac/Cac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0054045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	61	322	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0054045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	65	447	4	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0054045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	97	1088	4	ENST00000261937.6:c.1267dupC	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																															
TET1	80312	MSKCC	GRCh37	10	70446283	70446284	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	91	503	0	ENST00000373644.4:c.5230dup	p.Arg1744LysfsTer26	p.R1744Kfs*26	ENST00000373644	NM_030625.2	1741	-/A																																																																															
APC	324	MSKCC	GRCh37	5	112128161	112128161	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	59	281	0	ENST00000257430.4:c.664C>T	p.Gln222Ter	p.Q222*	ENST00000257430	NM_000038.5	222	Cag/Tag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274172	10274173	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0054045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	67	652	0	ENST00000330684.3:c.96dup	p.Ala33ArgfsTer105	p.A33Rfs*105	ENST00000330684	NM_001134407.1	32	-/C																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0054045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	131	452	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
POLE	5426	MSKCC	GRCh37	12	133220098	133220099	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0054045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	93	925	1	ENST00000320574.5:c.4337_4338dup	p.Val1447TrpfsTer7	p.V1447Wfs*7	ENST00000320574	NM_006231.2	1446	-/TG																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271304	18271304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	107	882	0	ENST00000222254.8:c.346G>A	p.Glu116Lys	p.E116K	ENST00000222254	NM_005027.3	116	Gag/Aag																																																																															
CIC	23152	MSKCC	GRCh37	19	42799130	42799131	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0054045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	86	965	1	ENST00000575354.2:c.4620dup	p.Thr1541HisfsTer18	p.T1541Hfs*18	ENST00000575354	NM_015125.3	1538	-/C																																																																															
ATM	472	MSKCC	GRCh37	11	108186839	108186839	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0054045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	64	337	0	ENST00000278616.4:c.6197A>G	p.Gln2066Arg	p.Q2066R	ENST00000278616	NM_000051.3	2066	cAg/cGg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128420046	128420047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0054045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	102	550	4	ENST00000265960.3:c.381dup	p.Ser128IlefsTer28	p.S128Ifs*28	ENST00000265960	NM_001006617.1	127	-/A																																																																															
SMYD3	64754	MSKCC	GRCh37	1	245927420	245927420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	63	445	0	ENST00000388985.4:c.1108G>A	p.Gly370Arg	p.G370R	ENST00000388985		370	Ggg/Agg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514782	103514782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	39	353	1	ENST00000355739.4:c.1283G>A	p.Ser428Asn	p.S428N	ENST00000355739	NM_000123.3	428	aGt/aAt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438222	110438222	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	28	113	0	ENST00000375856.3:c.179C>A	p.Ala60Glu	p.A60E	ENST00000375856	NM_003749.2	60	gCg/gAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350379	89350379	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	101	681	0	ENST00000301030.4:c.2571C>A	p.Ser857Arg	p.S857R	ENST00000301030	NM_001256183.1	857	agC/agA																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715967	52715968	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0054045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	109	768	0	ENST00000322088.6:c.537dup	p.Met180HisfsTer25	p.M180Hfs*25	ENST00000322088	NM_014225.5	178	acc/aCcc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47084118	47084118	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	84	587	0	ENST00000409792.3:c.7171T>G	p.Leu2391Val	p.L2391V	ENST00000409792	NM_014159.6	2391	Tta/Gta																																																																															
APC	324	MSKCC	GRCh37	5	112173860	112173875	+	frameshift_variant	Frame_Shift_Del	DEL	GGAATTGGTCTAGGCA	GGAATTGGTCTAGGCA	-			P-0054045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	33	293	0	ENST00000257430.4:c.2569_2584del	p.Gly857ThrfsTer54	p.G857Tfs*54	ENST00000257430	NM_000038.5	857	GGAATTGGTCTAGGCAac/ac																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64290000	64290000	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	83	456	0	ENST00000370651.3:c.443A>G	p.Tyr148Cys	p.Y148C	ENST00000370651	NM_003463.4	148	tAt/tGt																																																																															
PMS2	5395	MSKCC	GRCh37	7	6045558	6045558	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	142	395	0	ENST00000265849.7:c.128T>G	p.Val43Gly	p.V43G	ENST00000265849	NM_000535.5	43	gTa/gGa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739031	40739031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	139	692	1	ENST00000373198.4:c.3253G>A	p.Val1085Ile	p.V1085I	ENST00000373198	NM_133170.3	1085	Gtc/Atc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127739	64127739	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	155	949	0	ENST00000334205.4:c.232A>G	p.Thr78Ala	p.T78A	ENST00000334205	NM_003942.2	78	Acg/Gcg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2122911	2122911	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	147	825	0	ENST00000219476.3:c.2282A>T	p.Asp761Val	p.D761V	ENST00000219476	NM_000548.3	761	gAc/gTc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37680977	37680977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	152	492	1	ENST00000447079.4:c.3146G>A	p.Arg1049His	p.R1049H	ENST00000447079	NM_015083.1	1049	cGt/cAt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099403	157099435	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAG	CAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAG	-			P-0054046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	58	350	0	ENST00000346085.5:c.354_386del	p.Gln121_Gln131del	p.Q121_Q131del	ENST00000346085	NM_020732.3	114	CAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAG/-																																																																															
CD274	29126	MSKCC	GRCh37	9	5463050	5463050	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	52	257	0	ENST00000381577.3:c.611A>T	p.Asn204Ile	p.N204I	ENST00000381577	NM_014143.3	204	aAt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577146	7577153	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TAGATTAC	TAGATTAC	GAA			P-0054046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	216	721	2	ENST00000269305.4:c.785_792delinsTTC	p.Gly262ValfsTer8	p.G262Vfs*8	ENST00000269305	NM_001126112.2	262	gGTAATCTA/gTTC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0054047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	56	511	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023408	27023408	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	36	384	0	ENST00000324856.7:c.514C>T	p.Gln172Ter	p.Q172*	ENST00000324856	NM_006015.4	172	Caa/Taa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016679	12016679	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0054047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	35	316	0	ENST00000353533.5:c.813+2T>G		p.X271_splice	ENST00000353533	NM_003010.3	271																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	43	345	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0054069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1086	88	877	1	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578476	7578476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	370	914	0	ENST00000269305.4:c.454C>T	p.Pro152Ser	p.P152S	ENST00000269305	NM_001126112.2	152	Ccg/Tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0054075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	214	575	0	ENST00000269305.4:c.375+1delG		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
APC	324	MSKCC	GRCh37	5	112164609	112164609	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	81	263	0	ENST00000257430.4:c.1683del	p.Thr562ArgfsTer8	p.T562Rfs*8	ENST00000257430	NM_000038.5	561	aaG/aa																																																																															
ATM	472	MSKCC	GRCh37	11	108218085	108218085	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	125	252	0	ENST00000278616.4:c.8664A>G	p.Ile2888Met	p.I2888M	ENST00000278616	NM_000051.3	2888	atA/atG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426285	49426285	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	318	965	0	ENST00000301067.7:c.12203C>A	p.Ser4068Ter	p.S4068*	ENST00000301067	NM_003482.3	4068	tCa/tAa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145701	11145701	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	295	842	1	ENST00000344626.4:c.4063G>T	p.Glu1355Ter	p.E1355*	ENST00000344626	NM_003072.3	1355	Gag/Tag																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17389673	17389673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	223	662	0	ENST00000359435.4:c.806G>T	p.Gly269Val	p.G269V	ENST00000359435	NM_001033549.1	269	gGc/gTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223823	36223823	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	357	1012	0	ENST00000222270.7:c.6373G>C	p.Gly2125Arg	p.G2125R	ENST00000222270	NM_014727.1	2125	Ggg/Cgg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884864	134884864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	394	559	0	ENST00000398015.3:c.1640C>A	p.Ala547Glu	p.A547E	ENST00000398015	NM_004441.4	547	gCg/gAg																																																																															
SDHA	6389	MSKCC	GRCh37	5	225552	225552	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	101	144	0	ENST00000264932.6:c.331C>G	p.Leu111Val	p.L111V	ENST00000264932	NM_004168.2	111	Ctg/Gtg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157256686	157256686	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	118	256	0	ENST00000346085.5:c.2013G>T	p.Gln671His	p.Q671H	ENST00000346085	NM_020732.3	671	caG/caT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878200	151878200	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	242	543	0	ENST00000262189.6:c.6745C>A	p.Pro2249Thr	p.P2249T	ENST00000262189	NM_170606.2	2249	Cct/Act																																																																															
LYN	4067	MSKCC	GRCh37	8	56922601	56922601	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	205	508	0	ENST00000519728.1:c.1471G>T	p.Asp491Tyr	p.D491Y	ENST00000519728	NM_002350.3	491	Gac/Tac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499724	8499724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	184	523	0	ENST00000356435.5:c.2245G>T	p.Val749Leu	p.V749L	ENST00000356435		749	Gtg/Ttg																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652437	48652437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	285	476	1	ENST00000376670.3:c.1108G>A	p.Val370Met	p.V370M	ENST00000376670	NM_002049.3	370	Gtg/Atg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	30	599	0	ENST00000250448.2:c.655C>T	p.Arg219Cys	p.R219C	ENST00000250448	NM_004496.3	219	Cgc/Tgc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99170894	99170894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	16	701	0	ENST00000074304.5:c.1523G>A	p.Arg508Gln	p.R508Q	ENST00000074304	NM_001134224.1	508	cGg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845232	151845239	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	TATTGGCA	TATTGGCA	-			P-0054104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	13	478	0	ENST00000262189.6:c.13773_13780del	p.Tyr4591Ter	p.Y4591*	ENST00000262189	NM_170606.2	4591	taTGCCAATAgg/tagg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0054107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	70	309	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	51	292	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591125	67591125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	107	217	0	ENST00000274335.5:c.1718T>C	p.Leu573Pro	p.L573P	ENST00000274335		573	cTg/cCg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733321	40733321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	155	416	1	ENST00000373198.4:c.3485C>T	p.Ala1162Val	p.A1162V	ENST00000373198	NM_133170.3	1162	gCg/gTg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644599	21644599	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	105	453	0	ENST00000421138.2:c.68T>C	p.Ile23Thr	p.I23T	ENST00000421138		23	aTt/aCt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65304213	65304213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	85	424	0	ENST00000342505.4:c.2902C>A	p.Leu968Ile	p.L968I	ENST00000342505	NM_002227.2	968	Ctt/Att																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989503	212989503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	61	315	0	ENST00000342788.4:c.208C>A	p.His70Asn	p.H70N	ENST00000342788	NM_005235.2	70	Cac/Aac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974709	21974709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	133	451	1	ENST00000304494.5:c.118G>A	p.Ala40Thr	p.A40T	ENST00000304494	NM_000077.4	40	Gca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0054108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	92	334	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0054108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	13	592	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	118	209	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371942	55371942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	17	295	0	ENST00000297316.4:c.632C>T	p.Ala211Val	p.A211V	ENST00000297316	NM_022454.3	211	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435086	49435086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	52	835	0	ENST00000301067.7:c.6467C>T	p.Pro2156Leu	p.P2156L	ENST00000301067	NM_003482.3	2156	cCt/cTt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068909	30068909	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0054108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	51	569	0	ENST00000331968.5:c.2020G>T	p.Glu674Ter	p.E674*	ENST00000331968	NM_002742.2	674	Gaa/Taa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678342	88678342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	166	695	0	ENST00000360948.2:c.1194G>T	p.Glu398Asp	p.E398D	ENST00000360948	NM_001012338.2	398	gaG/gaT																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128047353	128047353	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	97	478	0	ENST00000285398.2:c.569A>T	p.Gln190Leu	p.Q190L	ENST00000285398	NM_000122.1	190	cAg/cTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76875950	76875950	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	19	387	0	ENST00000373344.5:c.5185T>C	p.Ser1729Pro	p.S1729P	ENST00000373344	NM_000489.3	1729	Tct/Cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0054174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	106	794	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872910	35872910	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	87	504	0	ENST00000216797.5:c.322A>T	p.Asn108Tyr	p.N108Y	ENST00000216797	NM_020529.2	108	Aac/Tac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822030	72822031	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCC			P-0054174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	32	528	0	ENST00000268489.5:c.10142_10144dup	p.Arg3381dup	p.R3381dup	ENST00000268489	NM_006885.3	3381	caa/cGGCaa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467038	25467038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	165	654	1	ENST00000264709.3:c.1837C>T	p.His613Tyr	p.H613Y	ENST00000264709	NM_175629.2	613	Cac/Tac																																																																															
TET2	54790	MSKCC	GRCh37	4	106156453	106156453	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	50	345	1	ENST00000380013.4:c.1354G>T	p.Glu452Ter	p.E452*	ENST00000380013	NM_001127208.2	452	Gag/Tag																																																																															
SMO	6608	MSKCC	GRCh37	7	128829040	128829042	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0052731-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			156	14	47	0	ENST00000249373.3:c.67_69delCTG	p.Leu23del	p.L23del	ENST00000249373	NM_005631.4	16	ggGCTg/ggg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56152566	56152566	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052731-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			184	94	295	0	ENST00000399503.3:c.622C>T	p.Arg208Ter	p.R208*	ENST00000399503	NM_005921.1	208	Cga/Tga																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78933956	78933956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052731-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			554	119	816	1	ENST00000306801.3:c.3556G>A	p.Gly1186Ser	p.G1186S	ENST00000306801	NM_020761.2	1186	Ggt/Agt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610247	10610247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052731-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			965	21	988	2	ENST00000171111.5:c.463G>A	p.Val155Ile	p.V155I	ENST00000171111	NM_203500.1	155	Gtc/Atc																																																																															
KDR	3791	MSKCC	GRCh37	4	55971101	55971101	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052731-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			220	31	516	0	ENST00000263923.4:c.1696A>G	p.Ser566Gly	p.S566G	ENST00000263923	NM_002253.2	566	Agc/Ggc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56167805	56167805	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052731-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			243	138	411	0	ENST00000399503.3:c.1370del	p.Thr457LysfsTer30	p.T457Kfs*30	ENST00000399503	NM_005921.1	457	aCa/aa																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46543204	46543204	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1612	86	478	0	ENST00000262741.5:c.297T>G	p.Asp99Glu	p.D99E	ENST00000262741	NM_003629.3	99	gaT/gaG																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325870	65325870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	118	572	0	ENST00000342505.4:c.1252G>A	p.Asp418Asn	p.D418N	ENST00000342505	NM_002227.2	418	Gat/Aat																																																																															
MCL1	4170	MSKCC	GRCh37	1	150550959	150550959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	55	352	1	ENST00000369026.2:c.697C>T	p.Arg233Trp	p.R233W	ENST00000369026	NM_021960.4	233	Cgg/Tgg																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518089	69518089	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1287	105	950	0	ENST00000294312.3:c.276C>G	p.Ile92Met	p.I92M	ENST00000294312	NM_005117.2	92	atC/atG																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18473929	18473929	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	36	287	0	ENST00000266497.5:c.1171C>T	p.Gln391Ter	p.Q391*	ENST00000266497		391	Caa/Taa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246324	46246324	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	42	408	0	ENST00000334344.6:c.4418C>G	p.Ser1473Cys	p.S1473C	ENST00000334344	NM_152641.2	1473	tCt/tGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061115	38061115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	21	79	0	ENST00000250448.2:c.874G>A	p.Glu292Lys	p.E292K	ENST00000250448	NM_004496.3	292	Gag/Aag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701853	43701853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	36	314	0	ENST00000382044.4:c.5392G>A	p.Glu1798Lys	p.E1798K	ENST00000382044	NM_001141980.1	1798	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68855984	68855984	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	95	593	0	ENST00000261769.5:c.1792C>T	p.Arg598Ter	p.R598*	ENST00000261769	NM_004360.3	598	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	229	743	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40474318	40474318	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	63	474	0	ENST00000264657.5:c.2083C>G	p.Pro695Ala	p.P695A	ENST00000264657	NM_139276.2	695	Cct/Gct																																																																															
EZH1	2145	MSKCC	GRCh37	17	40879727	40879727	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	90	582	0	ENST00000428826.2:c.172G>T	p.Glu58Ter	p.E58*	ENST00000428826		58	Gaa/Taa																																																																															
EZH1	2145	MSKCC	GRCh37	17	40880910	40880910	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	101	550	0	ENST00000428826.2:c.50del	p.Arg17LysfsTer3	p.R17Kfs*3	ENST00000428826		17	aGa/aa																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770110	56770110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	81	652	0	ENST00000337432.4:c.106G>A	p.Glu36Lys	p.E36K	ENST00000337432	NM_058216.2	36	Gag/Aag																																																																															
CD79B	974	MSKCC	GRCh37	17	62009583	62009583	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	106	768	0	ENST00000392795.3:c.39G>A	p.Trp13Ter	p.W13*	ENST00000392795	NM_001039933.1	13	tgG/tgA																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118903	70118903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	102	883	0	ENST00000245479.2:c.475G>A	p.Glu159Lys	p.E159K	ENST00000245479	NM_000346.3	159	Gag/Aag																																																																															
MALT1	10892	MSKCC	GRCh37	18	56376768	56376768	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	59	440	0	ENST00000348428.3:c.808G>C	p.Glu270Gln	p.E270Q	ENST00000348428	NM_006785.3	270	Gag/Cag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223186	5223186	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1213	129	689	0	ENST00000357368.4:c.2617G>C	p.Glu873Gln	p.E873Q	ENST00000357368	NM_002850.3	873	Gag/Cag																																																																															
INSR	3643	MSKCC	GRCh37	19	7117318	7117318	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1288	98	777	0	ENST00000302850.5:c.3898G>C	p.Glu1300Gln	p.E1300Q	ENST00000302850	NM_000208.2	1300	Gag/Cag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11168953	11168953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	74	580	0	ENST00000344626.4:c.4447G>A	p.Glu1483Lys	p.E1483K	ENST00000344626	NM_003072.3	1483	Gag/Aag																																																																															
CALR	811	MSKCC	GRCh37	19	13049987	13049987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1189	85	628	0	ENST00000316448.5:c.131C>T	p.Ser44Leu	p.S44L	ENST00000316448	NM_004343.3	44	tCa/tTa																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271771	18271771	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770445875		P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1430	133	888	2	ENST00000222254.8:c.458C>T	p.Pro153Leu	p.P153L	ENST00000222254	NM_005027.3	153	cCg/cTg																																																																															
AXL	558	MSKCC	GRCh37	19	41737159	41737159	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1409	118	884	0	ENST00000301178.4:c.739C>G	p.Pro247Ala	p.P247A	ENST00000301178	NM_021913.4	247	Cca/Gca																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906429	50906429	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2040	158	1055	0	ENST00000440232.2:c.1090C>G	p.Leu364Val	p.L364V	ENST00000440232	NM_002691.3	364	Ctg/Gtg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52693404	52693404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2149	154	925	0	ENST00000322088.6:c.55G>A	p.Glu19Lys	p.E19K	ENST00000322088	NM_014225.5	19	Gaa/Aaa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99160365	99160365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	87	600	0	ENST00000074304.5:c.844G>A	p.Glu282Lys	p.E282K	ENST00000074304	NM_001134224.1	282	Gag/Aag																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264697	46264697	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	63	423	0	ENST00000371998.3:c.1567C>G	p.Leu523Val	p.L523V	ENST00000371998		523	Ctc/Gtc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62321741	62321741	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1696	689	576	0	ENST00000508582.2:c.2432G>C	p.Arg811Thr	p.R811T	ENST00000508582		811	aGg/aCg																																																																															
EP300	2033	MSKCC	GRCh37	22	41527502	41527502	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	99	545	0	ENST00000263253.7:c.1393G>C	p.Glu465Gln	p.E465Q	ENST00000263253	NM_001429.3	465	Gaa/Caa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47139450	47139450	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	72	414	0	ENST00000409792.3:c.5137G>C	p.Asp1713His	p.D1713H	ENST00000409792	NM_014159.6	1713	Gat/Cat																																																																															
RHOA	387	MSKCC	GRCh37	3	49399935	49399935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	66	538	0	ENST00000418115.1:c.402G>A	p.Met134Ile	p.M134I	ENST00000418115	NM_001664.2	134	atG/atA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630006	187630006	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	117	697	0	ENST00000441802.2:c.976G>C	p.Asp326His	p.D326H	ENST00000441802	NM_005245.3	326	Gac/Cac																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38952360	38952360	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	51	322	0	ENST00000357387.3:c.3065T>C	p.Leu1022Pro	p.L1022P	ENST00000357387	NM_152756.3	1022	cTa/cCa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752417	57752417	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	20	208	0	ENST00000274289.3:c.1157-1G>A		p.X386_splice	ENST00000274289	NM_006622.3	386																																																																																
FLT4	2324	MSKCC	GRCh37	5	180057783	180057783	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148126951		P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	89	705	0	ENST00000261937.6:c.172G>A	p.Glu58Lys	p.E58K	ENST00000261937	NM_182925.4	58	Gag/Aag																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790788	89790788	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1676	129	869	0	ENST00000336032.3:c.175C>G	p.His59Asp	p.H59D	ENST00000336032	NM_006813.2	59	Cat/Gat																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980758	70980758	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	70	487	0	ENST00000276594.2:c.710C>G	p.Ser237Cys	p.S237C	ENST00000276594	NM_024504.3	237	tCt/tGt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135787755	135787755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	82	514	0	ENST00000298552.3:c.827C>T	p.Ser276Phe	p.S276F	ENST00000298552	NM_001162426.1	276	tCt/tTt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53244001	53244004	+	missense_variant	Missense_Mutation	ONP	GAAC	GAAC	AAAA			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	100	666	1	ENST00000375401.3:c.989_992delinsTTTT	p.Cys330_Ser331delinsPhePhe	p.C330_S331delinsFF	ENST00000375401	NM_004187.3	330	tGTTCt/tTTTTt																																																																															
BTK	695	MSKCC	GRCh37	X	100608938	100608938	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	147	609	0	ENST00000308731.7:c.1670C>G	p.Ser557Cys	p.S557C	ENST00000308731	NM_000061.2	557	tCc/tGc																																																																															
VHL	7428	MSKCC	GRCh37	3	10191487	10191487	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	40	420	0	ENST00000256474.2:c.480G>C	p.Glu160Asp	p.E160D	ENST00000256474	NM_000551.3	160	gaG/gaC																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156629	55156629	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	121	725	0	ENST00000257290.5:c.3030G>C	p.Gln1010His	p.Q1010H	ENST00000257290	NM_006206.4	1010	caG/caC																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	48	190	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435041	18435041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	70	237	0	ENST00000266497.5:c.26C>A	p.Pro9Gln	p.P9Q	ENST00000266497		9	cCa/cAa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0054003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	156	454	0	ENST00000347630.2:c.260A>T	p.Tyr87Phe	p.Y87F	ENST00000347630	NM_001007230.1	87	tAc/tTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0054088-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			638	56	329	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0054088-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			544	88	370	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38274849	38274849	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054088-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1600	90	385	0	ENST00000425967.3:c.1731C>G	p.Asn577Lys	p.N577K	ENST00000425967	NM_001174067.1	577	aaC/aaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0054088-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			634	168	608	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
ATM	472	MSKCC	GRCh37	11	108117782	108117782	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054088-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			369	30	254	0	ENST00000278616.4:c.993G>C	p.Lys331Asn	p.K331N	ENST00000278616	NM_000051.3	331	aaG/aaC																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440867	52440867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054088-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			608	110	607	0	ENST00000460680.1:c.637C>T	p.Arg213Cys	p.R213C	ENST00000460680	NM_004656.3	213	Cgt/Tgt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900243	101900243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054088-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			472	73	279	0	ENST00000374994.4:c.677G>A	p.Gly226Glu	p.G226E	ENST00000374994	NM_004612.2	226	gGa/gAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0054101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	135	302	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	319	655	0	ENST00000269305.4:c.568C>A	p.Pro190Thr	p.P190T	ENST00000269305	NM_001126112.2	190	Cct/Act																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64128018	64128018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	203	758	1	ENST00000334205.4:c.416G>A	p.Arg139His	p.R139H	ENST00000334205	NM_003942.2	139	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578471	7578471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	340	961	0	ENST00000269305.4:c.459delC	p.Gly154AlafsTer16	p.G154Afs*16	ENST00000269305	NM_001126112.2	153	ccC/cc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975360	13975360	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	27	389	0	ENST00000405192.2:c.527C>A	p.Pro176Gln	p.P176Q	ENST00000405192	NM_001163147.1	176	cCa/cAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211685	36211685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	256	678	0	ENST00000222270.7:c.1436G>T	p.Arg479Leu	p.R479L	ENST00000222270	NM_014727.1	479	cGg/cTg																																																																															
ALK	238	MSKCC	GRCh37	2	30143431	30143431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	264	538	0	ENST00000389048.3:c.95C>T	p.Pro32Leu	p.P32L	ENST00000389048	NM_004304.4	32	cCa/cTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629505	187629505	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	303	543	0	ENST00000441802.2:c.1477G>T	p.Gly493Cys	p.G493C	ENST00000441802	NM_005245.3	493	Ggt/Tgt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31511190	31511190	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	301	580	0	ENST00000344624.3:c.1384G>T	p.Ala462Ser	p.A462S	ENST00000344624		462	Gct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0054102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	258	880	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230641	46230641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	65	352	1	ENST00000334344.6:c.890C>A	p.Ser297Tyr	p.S297Y	ENST00000334344	NM_152641.2	297	tCc/tAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436344	110436344	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	85	530	1	ENST00000375856.3:c.2057C>G	p.Pro686Arg	p.P686R	ENST00000375856	NM_003749.2	686	cCc/cGc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52588830	52588831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0054102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	170	523	0	ENST00000394830.3:c.4197dup	p.Met1400HisfsTer109	p.M1400Hfs*109	ENST00000394830	NM_018313.4	1399	-/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0033560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	17	558	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0033560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1282	30	1003	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0053913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	69	370	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0053913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	45	246	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0053913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	64	309	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0053913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	34	378	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	36	558	3	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0053913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	16	354	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252865	36252865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	41	313	0	ENST00000300305.3:c.497G>A	p.Arg166Gln	p.R166Q	ENST00000300305		166	cGa/cAa																																																																															
BCL6	604	MSKCC	GRCh37	3	187446270	187446270	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	41	701	1	ENST00000232014.4:c.1418delC	p.Pro473ArgfsTer117	p.P473Rfs*117	ENST00000232014	NM_001130845.1	473	cCg/cg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190682810	190682810	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0053913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	17	297	0	ENST00000441310.2:c.492delA	p.Lys164AsnfsTer6	p.K164Nfs*6	ENST00000441310	NM_000534.4	162	gcA/gc																																																																															
TEK	7010	MSKCC	GRCh37	9	27217701	27217701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	61	550	1	ENST00000380036.4:c.3007C>T	p.Arg1003Cys	p.R1003C	ENST00000380036	NM_000459.3	1003	Cgc/Tgc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481838	56481838	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	151	621	1	ENST00000267101.3:c.766G>T	p.Val256Leu	p.V256L	ENST00000267101	NM_001982.3	256	Gta/Tta																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118359435	118359435	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	72	452	0	ENST00000534358.1:c.4439A>C	p.Lys1480Thr	p.K1480T	ENST00000534358	NM_005933.3	1480	aAa/aCa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641236	3641236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	77	814	1	ENST00000294008.3:c.2403G>T	p.Glu801Asp	p.E801D	ENST00000294008	NM_032444.2	801	gaG/gaT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821859	72821859	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	49	467	1	ENST00000268489.5:c.10316C>A	p.Pro3439His	p.P3439H	ENST00000268489	NM_006885.3	3439	cCt/cAt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682212	37682212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	45	610	2	ENST00000447079.4:c.3403G>A	p.Ala1135Thr	p.A1135T	ENST00000447079	NM_015083.1	1135	Gca/Aca																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688779	47688779	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	50	347	0	ENST00000347630.2:c.521A>G	p.Asn174Ser	p.N174S	ENST00000347630	NM_001007230.1	174	aAt/aGt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37036969	37037991	+	intron_variant	Intron	DEL	CTGCCTCAGCCTCCCGAGTAGCTGGGAGTACAGGCGTGCATGACCACACCCGGCTAATTTTTTTATTTTTAGTAGAGACGGGGTTTCTCCATGTTGGCCGGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCGCCCACCTCAGCCTCCCCAAGTGTTGGGATTACAGGTGTGAGCCCCCGTGCCCAGCCTATTATCTTATTTCTGAATAAAGAATTGTCTGTGTGGGGAATAGATAACTCTTTCTCATGCAGCCCCTGCTAGAAAATTTGTTTTCTCTAGCAGTTGGTCTGTGCTTATAGGCTACTCTTTGAAAGCACAAAAAATTTATTGACTTCTTTTTTTTGGGTTTTTTTTTTTTTTTGAGACAGAGTTTTGCCCTTGTTGCCCAGGTTGGAGTGCAATGGCGCGATCTCAGCTCACCGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTTAGCCTCCTGAGTAGCTGGGATTACAGGCATGCGTCACCATGCCTGGCTAATTTTGTATTTTTAGTACAAATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTATGGGTGTGAGCCATTGCGCCTGGCCAGAAAATTCATTGACTTCCTAAAGATTTATTAACTTTCTGCATTACTTTTTTTTTTCCCCTCCATCGTAAATATAAAAGGGAATAGTAGAGAAAATCATTCAGAATTTTATTTTTTAGTGACATTATTTAGTGACATTTTATTAGAGTCACTTAGGAACCTGAGGCTGAATAAAGTTCAGGTAAAAGTAAAATTAGTTGAGAAGAGACATCTGCCAAAAGAAATCTATTTTTAACTTCACTTGCTGTCTTTCCTAGAGGAACAGAAATAGTGCTGAATGTCCTATTAGAAATGATGGTTGCTCTGCCCGTCTCTTCCCTCTCTCTCACACAATATGTAAACTCATACAGTGTATGAGCCTGTAAGACAAAGGAAAAAC	CTGCCTCAGCCTCCCGAGTAGCTGGGAGTACAGGCGTGCATGACCACACCCGGCTAATTTTTTTATTTTTAGTAGAGACGGGGTTTCTCCATGTTGGCCGGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCGCCCACCTCAGCCTCCCCAAGTGTTGGGATTACAGGTGTGAGCCCCCGTGCCCAGCCTATTATCTTATTTCTGAATAAAGAATTGTCTGTGTGGGGAATAGATAACTCTTTCTCATGCAGCCCCTGCTAGAAAATTTGTTTTCTCTAGCAGTTGGTCTGTGCTTATAGGCTACTCTTTGAAAGCACAAAAAATTTATTGACTTCTTTTTTTTGGGTTTTTTTTTTTTTTTGAGACAGAGTTTTGCCCTTGTTGCCCAGGTTGGAGTGCAATGGCGCGATCTCAGCTCACCGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTTAGCCTCCTGAGTAGCTGGGATTACAGGCATGCGTCACCATGCCTGGCTAATTTTGTATTTTTAGTACAAATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTATGGGTGTGAGCCATTGCGCCTGGCCAGAAAATTCATTGACTTCCTAAAGATTTATTAACTTTCTGCATTACTTTTTTTTTTCCCCTCCATCGTAAATATAAAAGGGAATAGTAGAGAAAATCATTCAGAATTTTATTTTTTAGTGACATTATTTAGTGACATTTTATTAGAGTCACTTAGGAACCTGAGGCTGAATAAAGTTCAGGTAAAAGTAAAATTAGTTGAGAAGAGACATCTGCCAAAAGAAATCTATTTTTAACTTCACTTGCTGTCTTTCCTAGAGGAACAGAAATAGTGCTGAATGTCCTATTAGAAATGATGGTTGCTCTGCCCGTCTCTTCCCTCTCTCTCACACAATATGTAAACTCATACAGTGTATGAGCCTGTAAGACAAAGGAAAAAC	-			P-0053913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			0	45	0	0	ENST00000231790.2:c.117-1141_117-119del		p.*39*	ENST00000231790	NM_000249.3																																																																																	
APC	324	MSKCC	GRCh37	5	112174110	112174110	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0053913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	62	250	0	ENST00000257430.4:c.2819C>A	p.Ser940Ter	p.S940*	ENST00000257430	NM_000038.5	940	tCg/tAg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289247	33289247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	256	534	0	ENST00000374542.5:c.305C>T	p.Ser102Leu	p.S102L	ENST00000374542	NM_001141970.1	102	tCg/tTg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100211	30100211	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	29	431	0	ENST00000331968.5:c.1409A>C	p.Glu470Ala	p.E470A	ENST00000331968	NM_002742.2	470	gAa/gCa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577167	64577167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	107	738	0	ENST00000337652.1:c.415C>T	p.His139Tyr	p.H139Y	ENST00000337652	NM_130803.2	139	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0053943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	56	790	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0053943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1261	50	840	1	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	20	357	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349914	89349916	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs761762028		P-0053943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1276	34	929	0	ENST00000301030.4:c.3034_3036del	p.Lys1012del	p.K1012del	ENST00000301030	NM_001256183.1	1012	AAG/-																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032136	26032136	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	29	622	0	ENST00000244661.2:c.153G>C	p.Glu51Asp	p.E51D	ENST00000244661	NM_003537.3	51	gaG/gaC																																																																															
AKT1	207	MSKCC	GRCh37	14	105239420	105239420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1181	37	816	1	ENST00000349310.3:c.967G>T	p.Asp323Tyr	p.D323Y	ENST00000349310	NM_001014432.1	323	Gac/Tac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112359	115112359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	20	222	2	ENST00000257566.3:c.1381G>A	p.Gly461Ser	p.G461S	ENST00000257566	NM_016569.3	461	Ggc/Agc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56348523	56348523	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	34	356	0	ENST00000348428.3:c.331C>T	p.Gln111Ter	p.Q111*	ENST00000348428	NM_006785.3	111	Cag/Tag																																																																															
BCL6	604	MSKCC	GRCh37	3	187447761	187447779	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGAACTCTTCACGAGGA	GAGGAACTCTTCACGAGGA	-			P-0053943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	62	598	0	ENST00000232014.4:c.414_432del	p.Pro139ThrfsTer5	p.P139Tfs*5	ENST00000232014	NM_001130845.1	138	ccTCCTCGTGAAGAGTTCCTC/cc																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015094	37015094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	197	797	1	ENST00000358127.4:c.310C>T	p.Arg104Cys	p.R104C	ENST00000358127	NM_001280556.1	104	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578514	7578550	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGG	TTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGG	-			P-0053950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	210	1013	0	ENST00000269305.4:c.380_416del	p.Ser127Ter	p.S127*	ENST00000269305	NM_001126112.2	127	tCCCCTGCCCTCAACAAGATGTTTTGCCAACTGGCCAAg/tg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332653	70332653	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	46	541	0	ENST00000373644.4:c.558A>T	p.Gln186His	p.Q186H	ENST00000373644	NM_030625.2	186	caA/caT																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434629	99434629	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	182	889	0	ENST00000268035.6:c.716G>T	p.Cys239Phe	p.C239F	ENST00000268035	NM_000875.3	239	tGc/tTc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696449	47696449	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	79	442	0	ENST00000347630.2:c.374T>G	p.Phe125Cys	p.F125C	ENST00000347630	NM_001007230.1	125	tTt/tGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434357	49434357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1290	180	819	1	ENST00000301067.7:c.7196C>T	p.Pro2399Leu	p.P2399L	ENST00000301067	NM_003482.3	2399	cCc/cTc																																																																															
SYK	6850	MSKCC	GRCh37	9	93606272	93606273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	156	1246	3	ENST00000375746.1:c.98dupG	p.Met34HisfsTer3	p.M34Hfs*3	ENST00000375746	NM_001174167.1	31	cag/caGg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	100	541	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	146	1194	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	160	1112	2	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	22	506	3	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	45	538	8	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	59	696	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
TET1	80312	MSKCC	GRCh37	10	70446283	70446284	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	130	824	3	ENST00000373644.4:c.5230dup	p.Arg1744LysfsTer26	p.R1744Kfs*26	ENST00000373644	NM_030625.2	1741	-/A																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	179	1312	2	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692981	89692982	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	16	737	0	ENST00000371953.3:c.469dupG	p.Glu157GlyfsTer23	p.E157Gfs*23	ENST00000371953	NM_000314.4	155	-/G																																																																															
RB1	5925	MSKCC	GRCh37	13	49027168	49027168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	8	538	1	ENST00000267163.4:c.1735C>T	p.Arg579Ter	p.R579*	ENST00000267163	NM_000321.2	579	Cga/Tga																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	192	1124	9	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279861	46279866	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	57	853	0	ENST00000371998.3:c.3810_3815delACAGCA	p.Gln1275_Gln1276del	p.Q1275_Q1276del	ENST00000371998		1263	CAGCAA/-																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772951	135772951	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	46	672	0	ENST00000298552.3:c.2672del	p.Asn891ThrfsTer40	p.N891Tfs*40	ENST00000298552	NM_001162426.1	891	aAc/ac																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	71	706	10	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882049	36882050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	160	1247	4	ENST00000358127.4:c.963dupC	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	-/C																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399409	139399411	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	186	1321	20	ENST00000277541.6:c.4732_4734delGTG	p.Val1578del	p.V1578del	ENST00000277541	NM_017617.3	1578	GTG/-																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81941311	81941311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	94	966	2	ENST00000359376.3:c.1489G>A	p.Ala497Thr	p.A497T	ENST00000359376	NM_002661.3	497	Gcc/Acc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	139	649	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257365	19257366	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	124	1255	3	ENST00000162023.5:c.767dup	p.Glu257ArgfsTer28	p.E257Rfs*28	ENST00000162023		256	cca/ccCa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	35	264	1	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808898	1808898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	138	1442	1	ENST00000260795.2:c.2334delC	p.Ser779AlafsTer41	p.S779Afs*41	ENST00000260795		777	aCc/ac																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	185	797	1	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143043366	143043366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199940140		P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	26	567	0	ENST00000262992.4:c.2050G>A	p.Val684Ile	p.V684I	ENST00000262992	NM_001101669.1	684	Gtt/Att																																																																															
IDH1	3417	MSKCC	GRCh37	2	209104698	209104698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	72	586	0	ENST00000345146.2:c.880G>A	p.Val294Met	p.V294M	ENST00000345146	NM_005896.2	294	Gtg/Atg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591247	67591247	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	35	554	0	ENST00000274335.5:c.1746-1G>C		p.X582_splice	ENST00000274335		582																																																																																
RASA1	5921	MSKCC	GRCh37	5	86674316	86674317	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	33	471	0	ENST00000274376.6:c.2450_2451del	p.Ser817TyrfsTer12	p.S817Yfs*12	ENST00000274376	NM_002890.2	816	gaCTct/gact																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505508	25505508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	151	1099	5	ENST00000264709.3:c.250G>A	p.Ala84Thr	p.A84T	ENST00000264709	NM_175629.2	84	Gcc/Acc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100487	8100487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	191	1416	1	ENST00000346208.3:c.461C>T	p.Pro154Leu	p.P154L	ENST00000346208		154	cCg/cTg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86629108	86629108	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	37	458	0	ENST00000274376.6:c.853C>T	p.Arg285Ter	p.R285*	ENST00000274376	NM_002890.2	285	Cga/Tga																																																																															
ROS1	6098	MSKCC	GRCh37	6	117665285	117665285	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	38	566	0	ENST00000368508.3:c.4462C>A	p.Leu1488Met	p.L1488M	ENST00000368508	NM_002944.2	1488	Ctg/Atg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251949	153251949	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	44	742	0	ENST00000281708.4:c.1057delA	p.Ser353ValfsTer24	p.S353Vfs*24	ENST00000281708	NM_033632.3	353	Agt/gt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295098	1295098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	71	196	0	ENST00000310581.5:c.7C>T	p.Arg3Cys	p.R3C	ENST00000310581	NM_198253.2	3	Cgc/Tgc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	76	740	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	68	848	6	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522693	67522693	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	25	420	0	ENST00000274335.5:c.193delG	p.Glu65LysfsTer10	p.E65Kfs*10	ENST00000274335		64	Ggg/gg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546784	9546784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	91	643	0	ENST00000353224.5:c.1238C>T	p.Pro413Leu	p.P413L	ENST00000353224	NM_177990.2	413	cCg/cTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258977	16258977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	96	850	1	ENST00000375759.3:c.6242G>A	p.Arg2081Gln	p.R2081Q	ENST00000375759	NM_015001.2	2081	cGa/cAa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114169	115114169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	159	1040	1	ENST00000257566.3:c.1048G>A	p.Ala350Thr	p.A350T	ENST00000257566	NM_016569.3	350	Gcc/Acc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101967	11101967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	195	1235	2	ENST00000344626.4:c.1387G>A	p.Glu463Lys	p.E463K	ENST00000344626	NM_003072.3	463	Gag/Aag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660093	227660093	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143913301		P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	125	1121	2	ENST00000305123.5:c.3362C>T	p.Ala1121Val	p.A1121V	ENST00000305123	NM_005544.2	1121	gCg/gTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29677249	29677250	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	51	601	0	ENST00000358273.4:c.7371_7372del	p.His2457GlnfsTer8	p.H2457Qfs*8	ENST00000358273	NM_001042492.2	2457	cAT/c																																																																															
NF1	4763	MSKCC	GRCh37	17	29528504	29528504	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	49	564	0	ENST00000358273.4:c.1260+1G>A		p.X420_splice	ENST00000358273	NM_001042492.2	420																																																																																
ERCC4	2072	MSKCC	GRCh37	16	14015970	14015970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	24	461	0	ENST00000311895.7:c.290G>A	p.Arg97His	p.R97H	ENST00000311895	NM_005236.2	97	cGc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199492	16199492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	76	703	2	ENST00000375759.3:c.265C>T	p.Arg89Trp	p.R89W	ENST00000375759	NM_015001.2	89	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49430944	49430944	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	80	930	0	ENST00000301067.7:c.10195C>T	p.Gln3399Ter	p.Q3399*	ENST00000301067	NM_003482.3	3399	Cag/Tag																																																																															
POLE	5426	MSKCC	GRCh37	12	133252027	133252027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	161	1156	0	ENST00000320574.5:c.1183G>T	p.Gly395Trp	p.G395W	ENST00000320574	NM_006231.2	395	Ggg/Tgg																																																																															
MGA	23269	MSKCC	GRCh37	15	42050037	42050037	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	30	433	0	ENST00000219905.7:c.7191G>T	p.Lys2397Asn	p.K2397N	ENST00000219905	NM_001164273.1	2397	aaG/aaT																																																																															
CD276	80381	MSKCC	GRCh37	15	74000695	74000696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	188	1092	3	ENST00000318443.5:c.1391dup	p.Glu465ArgfsTer33	p.E465Rfs*33	ENST00000318443	NM_001024736.1	462	ttc/ttCc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56864471	56864471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	127	861	0	ENST00000308159.5:c.959C>T	p.Ala320Val	p.A320V	ENST00000308159	NM_014669.4	320	gCg/gTg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645932	67645932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	94	814	0	ENST00000264010.4:c.860G>A	p.Ser287Asn	p.S287N	ENST00000264010	NM_006565.3	287	aGc/aAc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15935629	15935629	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	94	596	0	ENST00000268712.3:c.7304T>C	p.Leu2435Pro	p.L2435P	ENST00000268712	NM_006311.3	2435	cTg/cCg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15965431	15965431	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	47	569	0	ENST00000268712.3:c.5375A>G	p.Gln1792Arg	p.Q1792R	ENST00000268712	NM_006311.3	1792	cAg/cGg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18963029	18963029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	209	1204	2	ENST00000262803.5:c.896C>T	p.Ala299Val	p.A299V	ENST00000262803	NM_002911.3	299	gCc/gTc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30303601	30303601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	87	683	5	ENST00000262643.3:c.29C>T	p.Ala10Val	p.A10V	ENST00000262643	NM_001238.2	10	gCg/gTg																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793071	33793071	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	140	636	0	ENST00000498907.2:c.250C>G	p.His84Asp	p.H84D	ENST00000498907	NM_004364.3	84	Cac/Gac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222902	36222902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	185	1375	1	ENST00000222270.7:c.5531C>A	p.Pro1844Gln	p.P1844Q	ENST00000222270	NM_014727.1	1844	cCa/cAa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426656	212426656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	73	823	0	ENST00000342788.4:c.2459T>C	p.Leu820Pro	p.L820P	ENST00000342788	NM_005235.2	820	cTg/cCg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957464	1957464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	127	982	0	ENST00000382891.5:c.2563C>A	p.Pro855Thr	p.P855T	ENST00000382891	NM_133335.3	855	Cct/Act																																																																															
RASA1	5921	MSKCC	GRCh37	5	86667992	86667992	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	17	521	0	ENST00000274376.6:c.1756T>C	p.Ser586Pro	p.S586P	ENST00000274376	NM_002890.2	586	Tcc/Ccc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148508757	148508757	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	34	586	0	ENST00000320356.2:c.1907C>A	p.Pro636His	p.P636H	ENST00000320356	NM_004456.4	636	cCt/cAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68995496	68995496	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	41	737	5	ENST00000288368.4:c.1904del	p.Lys635ArgfsTer9	p.K635Rfs*9	ENST00000288368	NM_024870.2	634	Aaa/aa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117870628	117870628	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	45	571	0	ENST00000297338.2:c.444A>C	p.Glu148Asp	p.E148D	ENST00000297338	NM_006265.2	148	gaA/gaC																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87322777	87322777	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	51	676	0	ENST00000277120.3:c.378A>C	p.Lys126Asn	p.K126N	ENST00000277120		126	aaA/aaC																																																																															
SYK	6850	MSKCC	GRCh37	9	93637032	93637032	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	103	730	0	ENST00000375746.1:c.1082A>C	p.Lys361Thr	p.K361T	ENST00000375746	NM_001174167.1	361	aAg/aCg																																																																															
ABL1	25	MSKCC	GRCh37	9	133760373	133760373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	126	1210	0	ENST00000318560.5:c.2696C>A	p.Pro899Gln	p.P899Q	ENST00000318560	NM_005157.4	899	cCg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	58	149	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	97	480	7	ENST00000342505.4:c.2580dupA	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	147	612	0	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851255	156851255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	179	842	0	ENST00000524377.1:c.2212G>A	p.Asp738Asn	p.D738N	ENST00000524377	NM_002529.3	738	Gac/Aac																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123247515	123247515	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	97	513	1	ENST00000358487.5:c.1976del	p.Lys659ArgfsTer34	p.K659Rfs*34	ENST00000358487	NM_000141.4	659	aAg/ag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118365422	118365422	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	90	373	0	ENST00000534358.1:c.5307delT	p.Pro1770HisfsTer53	p.P1770Hfs*53	ENST00000534358	NM_005933.3	1768	gTt/gt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445041	49445041	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	83	771	2	ENST00000301067.7:c.2425del	p.Gln809ArgfsTer121	p.Q809Rfs*121	ENST00000301067	NM_003482.3	809	Cag/ag																																																																															
SETD8	387893	MSKCC	GRCh37	12	123889545	123889545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	27	76	0	ENST00000330479.4:c.772C>T	p.Arg258Trp	p.R258W	ENST00000330479	NM_020382.3	258	Cgg/Tgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	109	381	3	ENST00000380152.3:c.5351delA	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																																																															
MGA	23269	MSKCC	GRCh37	15	42028815	42028815	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	161	667	1	ENST00000219905.7:c.4357del	p.Tyr1453MetfsTer27	p.Y1453Mfs*27	ENST00000219905	NM_001164273.1	1451	ccT/cc																																																																															
MGA	23269	MSKCC	GRCh37	15	42052635	42052635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	140	500	0	ENST00000219905.7:c.7306C>T	p.Arg2436Cys	p.R2436C	ENST00000219905	NM_001164273.1	2436	Cgt/Tgt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99478220	99478220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	88	435	0	ENST00000268035.6:c.3124C>T	p.Arg1042Cys	p.R1042C	ENST00000268035	NM_000875.3	1042	Cgt/Tgt																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2090159	2090159	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2233522		P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	284	1072	0	ENST00000219066.1:c.790G>A	p.Ala264Thr	p.A264T	ENST00000219066	NM_002528.5	264	Gcc/Acc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3828110	3828110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	159	660	0	ENST00000262367.5:c.2015G>A	p.Arg672His	p.R672H	ENST00000262367	NM_004380.2	672	cGt/cAt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647146	23647146	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs113217267		P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	174	792	0	ENST00000261584.4:c.721A>G	p.Asn241Asp	p.N241D	ENST00000261584	NM_024675.3	241	Aat/Gat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830471	72830471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	141	588	2	ENST00000268489.5:c.6110del	p.Pro2037GlnfsTer64	p.P2037Qfs*64	ENST00000268489	NM_006885.3	2037	cCa/ca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	92	503	2	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119780	70119781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	41	696	0	ENST00000245479.2:c.788dupG	p.Arg264GlnfsTer32	p.R264Qfs*32	ENST00000245479	NM_000346.3	261	gag/gaGg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11030342	11030344	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	172	667	0	ENST00000327064.4:c.1094_1096del	p.Gly365del	p.G365del	ENST00000327064	NM_199141.1	364	gaAGGa/gaa																																																																															
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	241	993	2	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753479	42753479	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1172	301	1164	1	ENST00000222329.4:c.785del	p.Pro262LeufsTer9	p.P262Lfs*9	ENST00000222329	NM_006494.2	262	cCt/ct																																																																															
IDH1	3417	MSKCC	GRCh37	2	209108211	209108211	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	148	472	4	ENST00000345146.2:c.638del	p.Asn213ThrfsTer4	p.N213Tfs*4	ENST00000345146	NM_005896.2	213	aAc/ac																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538287	9538287	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	153	578	0	ENST00000353224.5:c.1711del	p.Ser571ValfsTer6	p.S571Vfs*6	ENST00000353224	NM_177990.2	571	Agt/gt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967347	134967347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	50	522	0	ENST00000398015.3:c.2686G>A	p.Ala896Thr	p.A896T	ENST00000398015	NM_004441.4	896	Gcc/Acc																																																																															
KDR	3791	MSKCC	GRCh37	4	55964872	55964872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	32	324	0	ENST00000263923.4:c.2365G>A	p.Val789Ile	p.V789I	ENST00000263923	NM_002253.2	789	Gtt/Att																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270158	66270159	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	114	372	0	ENST00000273854.3:c.1723dup	p.Ile575AsnfsTer65	p.I575Nfs*65	ENST00000273854	NM_004439.5	575	att/aAtt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240767	55240767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	175	905	1	ENST00000275493.2:c.2011C>T	p.Arg671Cys	p.R671C	ENST00000275493	NM_005228.3	671	Cgc/Tgc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966682	36966682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	207	674	2	ENST00000358127.4:c.644C>T	p.Pro215Leu	p.P215L	ENST00000358127	NM_001280556.1	215	cCg/cTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	155	840	4	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395158	139395158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1291	164	1180	1	ENST00000277541.6:c.5780C>T	p.Thr1927Met	p.T1927M	ENST00000277541	NM_017617.3	1927	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577543	7577551	+	inframe_deletion	In_Frame_Del	DEL	CATGCCGCC	CATGCCGCC	-			P-0054034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	131	683	0	ENST00000269305.4:c.730_738del	p.Gly244_Met246del	p.G244_M246del	ENST00000269305	NM_001126112.2	244	GGCGGCATG/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0054036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	57	466	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094409	27094409	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0054036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	78	648	1	ENST00000324856.7:c.3119del	p.Asn1040IlefsTer19	p.N1040Ifs*19	ENST00000324856	NM_006015.4	1039	acA/ac																																																																															
ATM	472	MSKCC	GRCh37	11	108204627	108204627	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0054036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	62	241	0	ENST00000278616.4:c.7943del	p.Pro2648GlnfsTer12	p.P2648Qfs*12	ENST00000278616	NM_000051.3	2648	Cca/ca																																																																															
PALB2	79728	MSKCC	GRCh37	16	23649405	23649405	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs151316635		P-0054036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	51	441	0	ENST00000261584.4:c.94C>G	p.Leu32Val	p.L32V	ENST00000261584	NM_024675.3	32	Cta/Gta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0054039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	57	374	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436410	49436410	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	46	611	0	ENST00000301067.7:c.5801A>G	p.Asn1934Ser	p.N1934S	ENST00000301067	NM_003482.3	1934	aAt/aGt																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871256	35871256	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	46	411	0	ENST00000216797.5:c.917A>C	p.Asp306Ala	p.D306A	ENST00000216797	NM_020529.2	306	gAt/gCt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295212	1295212	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0054039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	140	334	1				ENST00000310581	NM_198253.2																																																																																	
TERT	7015	MSKCC	GRCh37	5	1295225	1295225	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0054039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	114	389	1				ENST00000310581	NM_198253.2																																																																																	
KDM6A	7403	MSKCC	GRCh37	X	44949065	44949065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	46	501	0	ENST00000377967.4:c.3626G>A	p.Arg1209Lys	p.R1209K	ENST00000377967	NM_021140.2	1209	aGg/aAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0054040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	292	918	0	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2220201	2220201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	163	971	0	ENST00000398665.3:c.2786G>A	p.Ser929Asn	p.S929N	ENST00000398665	NM_032482.2	929	aGc/aAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0054041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	48	409	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248444	212248444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	62	400	2	ENST00000342788.4:c.3823C>T	p.Arg1275Trp	p.R1275W	ENST00000342788	NM_005235.2	1275	Cgg/Tgg																																																																															
AXL	558	MSKCC	GRCh37	19	41727829	41727829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	108	942	4	ENST00000301178.4:c.454G>A	p.Ala152Thr	p.A152T	ENST00000301178	NM_021913.4	152	Gcc/Acc																																																																															
ATM	472	MSKCC	GRCh37	11	108186742	108186742	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	78	423	0	ENST00000278616.4:c.6100C>T	p.Arg2034Ter	p.R2034*	ENST00000278616	NM_000051.3	2034	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0053285-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			503	137	391	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053285-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			527	255	618	0	ENST00000304494.5:c.322G>C	p.Asp108His	p.D108H	ENST00000304494	NM_000077.4	108	Gat/Cat																																																																															
STK11	6794	MSKCC	GRCh37	19	1220410	1220410	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053285-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			777	311	857	0	ENST00000326873.7:c.503A>G	p.His168Arg	p.H168R	ENST00000326873	NM_000455.4	168	cAt/cGt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610417	10610417	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053285-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			743	340	918	0	ENST00000171111.5:c.293T>A	p.Val98Glu	p.V98E	ENST00000171111	NM_203500.1	98	gTg/gAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121194	11121194	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053285-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			586	193	639	0	ENST00000344626.4:c.2261T>G	p.Leu754Arg	p.L754R	ENST00000344626	NM_003072.3	754	cTc/cGc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	114	444	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	162	791	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	154	436	1	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	178	904	4	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	90	573	4	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9778972	9778972	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	139	682	2	ENST00000377346.4:c.1241C>T	p.Ala414Val	p.A414V	ENST00000377346	NM_005026.3	414	gCg/gTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	10	372	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266134	41266136	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	11	360	0	ENST00000349496.5:c.133_135delTCT	p.Ser45del	p.S45del	ENST00000349496	NM_001904.3	44	cCTTct/cct																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	171	823	1	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	124	483	4	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913253	39913253	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	58	647	0	ENST00000378444.4:c.4862delC	p.Pro1621GlnfsTer53	p.P1621Qfs*53	ENST00000378444	NM_001123385.1	1621	cCa/ca																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882049	36882050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	231	1072	8	ENST00000358127.4:c.963dupC	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	-/C																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	115	518	6	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513282	44513287	+	inframe_deletion	In_Frame_Del	DEL	CCACCG	CCACCG	-			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	191	706	1	ENST00000291552.4:c.648_653delCGGTGG	p.Gly222_Gly223del	p.G222_G223del	ENST00000291552	NM_006758.2	216	ggCGGTGGt/ggt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157505443	157505443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	64	518	0	ENST00000346085.5:c.3428del	p.Lys1143SerfsTer68	p.K1143Sfs*68	ENST00000346085	NM_020732.3	1142	Aaa/aa																																																																															
B2M	567	MSKCC	GRCh37	15	45003779	45003779	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	44	707	0	ENST00000558401.1:c.35T>C	p.Leu12Pro	p.L12P	ENST00000558401	NM_004048.2	12	cTa/cCa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	131	590	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119024	70119024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	181	907	1	ENST00000245479.2:c.600del	p.Asn201ThrfsTer18	p.N201Tfs*18	ENST00000245479	NM_000346.3	199	tCc/tc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	71	1075	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527398	157527398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	34	439	0	ENST00000346085.5:c.5127delA	p.Ala1710HisfsTer56	p.A1710Hfs*56	ENST00000346085	NM_020732.3	1708	cAa/ca																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738979	145738979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	214	846	2	ENST00000428558.2:c.2176G>A	p.Ala726Thr	p.A726T	ENST00000428558	NM_004260.3	726	Gca/Aca																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599271	28599271	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1457528646		P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	222	1070	0	ENST00000253063.3:c.722del	p.Pro241GlnfsTer6	p.P241Qfs*6	ENST00000253063	NM_031459.4	239	agC/ag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	248	976	2	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																															
WT1	7490	MSKCC	GRCh37	11	32413578	32413578	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	125	490	0	ENST00000332351.3:c.1372C>T	p.Arg458Ter	p.R458*	ENST00000332351	NM_024426.4	458	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087346	27087346	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	103	436	0	ENST00000324856.7:c.1921-1G>T		p.X641_splice	ENST00000324856	NM_006015.4	641																																																																																
AR	367	MSKCC	GRCh37	X	66765635	66765635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	217	1084	0	ENST00000374690.3:c.647G>A	p.Gly216Glu	p.G216E	ENST00000374690	NM_000044.3	216	gGg/gAg																																																																															
B2M	567	MSKCC	GRCh37	15	45007642	45007642	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	27	297	0	ENST00000558401.1:c.89A>G	p.Tyr30Cys	p.Y30C	ENST00000558401	NM_004048.2	30	tAc/tGc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78428598	78428598	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	72	463	0	ENST00000370768.2:c.1201del	p.Ser401AlafsTer2	p.S401Afs*2	ENST00000370768	NM_003902.3	401	Agc/gc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244243	5244243	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	103	1026	0	ENST00000357368.4:c.1239delC	p.Ser414AlafsTer30	p.S414Afs*30	ENST00000357368	NM_002850.3	413	ccC/cc																																																																															
CASP8	841	MSKCC	GRCh37	2	202139642	202139642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	139	428	0	ENST00000358485.4:c.803C>T	p.Ser268Leu	p.S268L	ENST00000358485	NM_001080125.1	268	tCg/tTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713851	30713853	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	173	820	0	ENST00000359013.4:c.1255_1257del	p.Cys419del	p.C419del	ENST00000359013	NM_001024847.2	417	acCTGc/acc																																																																															
STK19	8859	MSKCC	GRCh37	6	31940100	31940100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	89	1033	0	ENST00000375331.2:c.242T>C	p.Val81Ala	p.V81A	ENST00000375331	NM_004197.1	81	gTa/gCa																																																																															
PARP1	142	MSKCC	GRCh37	1	226573273	226573273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	184	723	0	ENST00000366794.5:c.943G>A	p.Val315Ile	p.V315I	ENST00000366794	NM_001618.3	315	Gtc/Atc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2130264	2130264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	111	1140	0	ENST00000219476.3:c.3496C>T	p.Pro1166Ser	p.P1166S	ENST00000219476	NM_000548.3	1166	Cct/Tct																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820852	3820852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	251	1061	3	ENST00000262367.5:c.2599C>T	p.Pro867Ser	p.P867S	ENST00000262367	NM_004380.2	867	Cca/Tca																																																																															
SETD8	387893	MSKCC	GRCh37	12	123875183	123875183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	97	509	0	ENST00000330479.4:c.139G>A	p.Val47Ile	p.V47I	ENST00000330479	NM_020382.3	47	Gta/Ata																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864534	57864534	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	187	959	0	ENST00000228682.2:c.2015del	p.Gly672GlufsTer47	p.G672Efs*47	ENST00000228682	NM_005269.2	671	Ggg/gg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11269492	11269492	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	114	531	0	ENST00000361445.4:c.3678G>T	p.Glu1226Asp	p.E1226D	ENST00000361445	NM_004958.3	1226	gaG/gaT																																																																															
NEGR1	257194	MSKCC	GRCh37	1	71873131	71873131	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	25	313	0	ENST00000357731.5:c.1063T>C	p.Ter355GlnextTer9	p.*355Qext*9	ENST00000357731	NM_173808.2	355	Taa/Caa																																																																															
RET	5979	MSKCC	GRCh37	10	43595972	43595972	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	206	990	0	ENST00000355710.3:c.139G>T	p.Gly47Cys	p.G47C	ENST00000355710	NM_020975.4	47	Ggc/Tgc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	430217	430217	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	61	372	0	ENST00000399788.2:c.2485T>G	p.Phe829Val	p.F829V	ENST00000399788	NM_001042603.1	829	Ttt/Gtt																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871025	12871025	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	83	459	0	ENST00000228872.4:c.252del	p.Leu84PhefsTer35	p.L84Ffs*35	ENST00000228872	NM_004064.3	84	ttG/tt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552780	18552780	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	79	389	0	ENST00000266497.5:c.2191A>C	p.Ser731Arg	p.S731R	ENST00000266497		731	Agt/Cgt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243902	46243902	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	75	354	0	ENST00000334344.6:c.1996C>T	p.Gln666Ter	p.Q666*	ENST00000334344	NM_152641.2	666	Caa/Taa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495462	56495464	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	182	813	0	ENST00000267101.3:c.3655_3657del	p.Glu1219del	p.E1219del	ENST00000267101	NM_001982.3	1218	GAG/-																																																																															
POLE	5426	MSKCC	GRCh37	12	133244151	133244153	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	208	692	0	ENST00000320574.5:c.2255_2257del	p.Ser752del	p.S752del	ENST00000320574	NM_006231.2	752	tCCTtc/ttc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524671	103524671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	168	492	0	ENST00000355739.4:c.2802G>T	p.Glu934Asp	p.E934D	ENST00000355739	NM_000123.3	934	gaG/gaT																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36989334	36989334	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	149	724	1	ENST00000354822.5:c.1A>T	p.Met1?	p.M1?	ENST00000354822	NM_001079668.2	1	Atg/Ttg																																																																															
MGA	23269	MSKCC	GRCh37	15	42058861	42058861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	112	408	0	ENST00000219905.7:c.8581C>T	p.Arg2861Trp	p.R2861W	ENST00000219905	NM_001164273.1	2861	Cgg/Tgg																																																																															
BLM	641	MSKCC	GRCh37	15	91358487	91358487	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	30	518	0	ENST00000355112.3:c.4232A>G	p.Lys1411Arg	p.K1411R	ENST00000355112	NM_000057.2	1411	aAg/aGg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467812	99467812	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	110	476	0	ENST00000268035.6:c.2681A>G	p.Asn894Ser	p.N894S	ENST00000268035	NM_000875.3	894	aAc/aGc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274025	10274025	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	109	1059	0	ENST00000330684.3:c.244C>A	p.Leu82Ile	p.L82I	ENST00000330684	NM_001134407.1	82	Ctc/Atc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30128235	30128235	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	76	875	0	ENST00000263025.4:c.997T>C	p.Tyr333His	p.Y333H	ENST00000263025	NM_002746.2	333	Tac/Cac																																																																															
EZH1	2145	MSKCC	GRCh37	17	40858081	40858081	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	94	831	0	ENST00000428826.2:c.1783T>C	p.Trp595Arg	p.W595R	ENST00000428826		595	Tgg/Cgg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870056	40870056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	139	503	0	ENST00000428826.2:c.961C>T	p.Arg321Cys	p.R321C	ENST00000428826		321	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229358	36229359	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTT			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	178	693	0	ENST00000222270.7:c.8049_8050insTTT	p.Gly2683_Glu2684insPhe	p.G2683_E2684insF	ENST00000222270	NM_014727.1	2683	ggt/ggTTTt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982370	25982370	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	41	270	0	ENST00000435504.4:c.920T>A	p.Leu307His	p.L307H	ENST00000435504		307	cTc/cAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41568632	41568632	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	77	437	0	ENST00000263253.7:c.4582A>G	p.Lys1528Glu	p.K1528E	ENST00000263253	NM_001429.3	1528	Aaa/Gaa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52598150	52598151	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	154	619	0	ENST00000394830.3:c.3715_3716del	p.Ser1239ArgfsTer18	p.S1239Rfs*18	ENST00000394830	NM_018313.4	1239	AGc/c																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133520	55133520	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	41	633	0	ENST00000257290.5:c.824T>C	p.Leu275Ser	p.L275S	ENST00000257290	NM_006206.4	275	tTg/tCg																																																																															
TERT	7015	MSKCC	GRCh37	5	1293709	1293709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	71	1249	0	ENST00000310581.5:c.1292C>T	p.Pro431Leu	p.P431L	ENST00000310581	NM_198253.2	431	cCc/cTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166731	32166731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	236	1037	0	ENST00000375023.3:c.4507C>T	p.Pro1503Ser	p.P1503S	ENST00000375023	NM_004557.3	1503	Cca/Tca																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93969142	93969143	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	38	373	0	ENST00000369303.4:c.1853dup	p.Asn618LysfsTer2	p.N618Kfs*2	ENST00000369303	NM_004440.3	618	aat/aaAt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552960	106552960	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	83	823	0	ENST00000369096.4:c.925T>C	p.Phe309Leu	p.F309L	ENST00000369096	NM_001198.3	309	Ttt/Ctt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023199	150023199	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	42	576	0	ENST00000253339.5:c.64A>G	p.Asn22Asp	p.N22D	ENST00000253339		22	Aac/Gac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874886	151874886	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	101	377	0	ENST00000262189.6:c.7652A>G	p.His2551Arg	p.H2551R	ENST00000262189	NM_170606.2	2551	cAc/cGc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521385	8521385	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	107	611	1	ENST00000356435.5:c.853G>T	p.Gly285Ter	p.G285*	ENST00000356435		285	Gga/Tga																																																																															
ABL1	25	MSKCC	GRCh37	9	133760480	133760480	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	193	867	0	ENST00000318560.5:c.2803A>G	p.Thr935Ala	p.T935A	ENST00000318560	NM_005157.4	935	Acg/Gcg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932877	39932877	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	122	884	0	ENST00000378444.4:c.1722del	p.Asn575MetfsTer14	p.N575Mfs*14	ENST00000378444	NM_001123385.1	574	ccC/cc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228029	53228029	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	151	935	0	ENST00000375401.3:c.2285A>C	p.Lys762Thr	p.K762T	ENST00000375401	NM_004187.3	762	aAg/aCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0053836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	11	335	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0053840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	73	295	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0053840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	129	766	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912580		P-0053840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	31	408	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965475	68965475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	35	524	0	ENST00000288368.4:c.1087C>T	p.Arg363Trp	p.R363W	ENST00000288368	NM_024870.2	363	Cgg/Tgg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999302	100999302	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	73	1027	0	ENST00000325455.5:c.500G>T	p.Arg167Leu	p.R167L	ENST00000325455	NM_001202474.3	167	cGg/cTg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134817	41134817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	20	520	1	ENST00000379561.5:c.811G>T	p.Ala271Ser	p.A271S	ENST00000379561	NM_002015.3	271	Gcc/Tcc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39741531	39741531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	17	522	0	ENST00000361337.2:c.1418G>A	p.Arg473Gln	p.R473Q	ENST00000361337	NM_003286.2	473	cGg/cAg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060780	38060781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0053858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	16	1099	0	ENST00000250448.2:c.1208dup	p.Asn403LysfsTer12	p.N403Kfs*12	ENST00000250448	NM_004496.3	403	aac/aaAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272036	15272036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	42	651	1	ENST00000263388.2:c.6403G>T	p.Val2135Leu	p.V2135L	ENST00000263388	NM_000435.2	2135	Gtg/Ttg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71101750	71101751	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0053859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	42	264	0	ENST00000318789.4:c.447dup	p.Gln150ThrfsTer20	p.Q150Tfs*20	ENST00000318789	NM_032682.5	149	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7578512	7578512	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0053859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	73	940	0	ENST00000269305.4:c.418del	p.Thr140ProfsTer30	p.T140Pfs*30	ENST00000269305	NM_001126112.2	140	Acc/cc																																																																															
ERG	2078	MSKCC	GRCh37	21	39755705	39755705	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs547051424		P-0053859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	10	678	2	ENST00000288319.7:c.1060C>T	p.Arg354Trp	p.R354W	ENST00000288319	NM_182918.3	354	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0053861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	299	770	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137323821	137323821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	75	826	3	ENST00000481739.1:c.1114G>A	p.Ala372Thr	p.A372T	ENST00000481739	NM_002957.4	372	Gcc/Acc																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778143	27778143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	54	722	2	ENST00000369163.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000369163	NM_003536.2	98	Gag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845523	151845524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0053861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	136	662	0	ENST00000262189.6:c.13488dup	p.Lys4497Ter	p.K4497*	ENST00000262189	NM_170606.2	4496	-/T																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540670	187540670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	42	385	0	ENST00000441802.2:c.7070C>T	p.Thr2357Met	p.T2357M	ENST00000441802	NM_005245.3	2357	aCg/aTg																																																																															
FH	2271	MSKCC	GRCh37	1	241672007	241672007	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	46	454	0	ENST00000366560.3:c.634C>A	p.Gln212Lys	p.Q212K	ENST00000366560	NM_000143.3	212	Cag/Aag																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246490627	246490630	+	frameshift_variant	Frame_Shift_Del	DEL	AGTT	AGTT	-			P-0053861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	52	400	0	ENST00000388985.4:c.404_407del	p.Lys135ArgfsTer13	p.K135Rfs*13	ENST00000388985		135	aAACTg/ag																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871044	12871044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	45	337	1	ENST00000228872.4:c.271C>A	p.Pro91Thr	p.P91T	ENST00000228872	NM_004064.3	91	Ccc/Acc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031909	10031909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	56	649	0	ENST00000330684.3:c.914C>A	p.Ser305Tyr	p.S305Y	ENST00000330684	NM_001134407.1	305	tCt/tAt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026996	48026996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	44	371	0	ENST00000234420.5:c.1874C>T	p.Ser625Phe	p.S625F	ENST00000234420	NM_000179.2	625	tCc/tTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916924	178916932	+	inframe_deletion	In_Frame_Del	DEL	CAGTAGGCA	CAGTAGGCA	-			P-0053861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	148	457	0	ENST00000263967.3:c.311_319del	p.Pro104_Asn107delinsHis	p.P104_N107delinsH	ENST00000263967	NM_006218.2	104	cCAGTAGGCAac/cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0053862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	449	720	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132552	11132552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	455	737	0	ENST00000344626.4:c.2768C>T	p.Ala923Val	p.A923V	ENST00000344626	NM_003072.3	923	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0053865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	47	435	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0053865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	68	776	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115269632	115269632	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	77	707	1	ENST00000438362.2:c.1574G>T	p.Gly525Val	p.G525V	ENST00000438362	NM_001242891.1	525	gGa/gTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733237	40733237	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	131	641	0	ENST00000373198.4:c.3569A>T	p.Asn1190Ile	p.N1190I	ENST00000373198	NM_133170.3	1190	aAc/aTc																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66520220	66520220	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0053888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	87	389	0	ENST00000358598.2:c.502+2T>G		p.X168_splice	ENST00000358598	NM_212471.2	168																																																																																
IKZF1	10320	MSKCC	GRCh37	7	50450267	50450267	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	249	776	0	ENST00000331340.3:c.451G>T	p.Gly151Trp	p.G151W	ENST00000331340	NM_006060.4	151	Ggg/Tgg																																																																															
MED12	9968	MSKCC	GRCh37	X	70349232	70349232	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	363	477	0	ENST00000374080.3:c.3644T>A	p.Ile1215Asn	p.I1215N	ENST00000374080		1215	aTc/aAc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44923064	44923065	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TA	TA	G			P-0053888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	138	277	0	ENST00000377967.4:c.1923+2_1923+3delinsG		p.X641_splice	ENST00000377967	NM_021140.2	641																																																																																
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	46	496	4	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	212	828	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25497950	25497950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	84	734	0	ENST00000264709.3:c.499C>T	p.Arg167Trp	p.R167W	ENST00000264709	NM_175629.2	167	Cgg/Tgg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435300	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-	rs765493638		P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	69	333	0	ENST00000375856.3:c.3099_3101del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1033	ccACCg/ccg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521299	187521299	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	85	621	0	ENST00000441802.2:c.11856delT	p.Phe3952LeufsTer31	p.F3952Lfs*31	ENST00000441802	NM_005245.3	3952	ttT/tt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	106	410	4	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	63	542	0	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419951	41419951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	94	616	0	ENST00000373198.4:c.370G>A	p.Val124Met	p.V124M	ENST00000373198	NM_133170.3	124	Gtg/Atg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	92	803	6	ENST00000261937.6:c.89dupC	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185165720	185165720	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	28	325	0	ENST00000265026.3:c.999delA	p.Val334LeufsTer14	p.V334Lfs*14	ENST00000265026	NM_004721.4	332	gAa/ga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557927	187557927	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	174	488	0	ENST00000441802.2:c.3784C>T	p.Arg1262Ter	p.R1262*	ENST00000441802	NM_005245.3	1262	Cga/Tga																																																																															
MGA	23269	MSKCC	GRCh37	15	42054541	42054541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	57	362	0	ENST00000219905.7:c.7731delA	p.Asp2578ThrfsTer10	p.D2578Tfs*10	ENST00000219905	NM_001164273.1	2575	agA/ag																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	117	485	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	250	1067	2	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222730	5222731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	65	919	7	ENST00000357368.4:c.3072dupC	p.Val1025ArgfsTer34	p.V1025Rfs*34	ENST00000357368	NM_002850.3	1024	-/C																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447773	49447773	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	32	493	0	ENST00000301067.7:c.661del	p.Ala221LeufsTer40	p.A221Lfs*40	ENST00000301067	NM_003482.3	221	Gct/ct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214398	36214398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs868041281		P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	88	643	4	ENST00000222270.7:c.3057del	p.Gly1020AlafsTer4	p.G1020Afs*4	ENST00000222270	NM_014727.1	1018	Aaa/aa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025856	48025857	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	48	276	0	ENST00000234420.5:c.741dupA	p.Arg248ThrfsTer8	p.R248Tfs*8	ENST00000234420	NM_000179.2	245	ata/atAa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467175	99467175	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	26	499	0	ENST00000268035.6:c.2556G>A	p.Trp852Ter	p.W852*	ENST00000268035	NM_000875.3	852	tgG/tgA																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120257	70120257	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	143	758	0	ENST00000245479.2:c.1259A>G	p.Tyr420Cys	p.Y420C	ENST00000245479	NM_000346.3	420	tAc/tGc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524759	187524759	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	108	709	0	ENST00000441802.2:c.10921C>A	p.His3641Asn	p.H3641N	ENST00000441802	NM_005245.3	3641	Cac/Aac																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637540	52637540	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	90	341	0	ENST00000394830.3:c.2776del	p.Arg926GlufsTer82	p.R926Efs*82	ENST00000394830	NM_018313.4	926	Aga/ga																																																																															
GNAS	2778	MSKCC	GRCh37	20	57478757	57478757	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	58	423	0	ENST00000371085.3:c.348del	p.Val117TrpfsTer16	p.V117Wfs*16	ENST00000371085	NM_000516.4	115	Ccc/cc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112888304	112888304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	66	367	0	ENST00000351677.2:c.320C>A	p.Pro107His	p.P107H	ENST00000351677	NM_002834.3	107	cCt/cAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70360600	70360608	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAA	CAGCAGCAA	-			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	57	517	0	ENST00000374080.3:c.6174_6182del	p.Gln2074_Gln2076del	p.Q2074_Q2076del	ENST00000374080		2054	CAGCAGCAA/-																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646190	3646190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	99	1024	0	ENST00000294008.3:c.1888G>A	p.Gly630Ser	p.G630S	ENST00000294008	NM_032444.2	630	Ggc/Agc																																																																															
NBN	4683	MSKCC	GRCh37	8	90970987	90970987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	72	345	1	ENST00000265433.3:c.1090G>A	p.Val364Ile	p.V364I	ENST00000265433	NM_002485.4	364	Gta/Ata																																																																															
TP53	7157	MSKCC	GRCh37	17	7578464	7578464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	138	963	3	ENST00000269305.4:c.466C>T	p.Arg156Cys	p.R156C	ENST00000269305	NM_001126112.2	156	Cgc/Tgc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659847	227659847	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	52	353	0	ENST00000305123.5:c.3608del	p.Pro1203HisfsTer24	p.P1203Hfs*24	ENST00000305123	NM_005544.2	1203	cCa/ca																																																																															
ERF	2077	MSKCC	GRCh37	19	42754580	42754580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	110	852	0	ENST00000222329.4:c.160G>A	p.Glu54Lys	p.E54K	ENST00000222329	NM_006494.2	54	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023864	27023913	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGCCGGCAAGGGCCCGGCGGACATGGCCTCGCAGTGTTGGGGGGCTGC	GGCGCCGGCAAGGGCCCGGCGGACATGGCCTCGCAGTGTTGGGGGGCTGC	-			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	60	361	0	ENST00000324856.7:c.974_1023del	p.Ala325GlyfsTer58	p.A325Gfs*58	ENST00000324856	NM_006015.4	324	GGCGCCGGCAAGGGCCCGGCGGACATGGCCTCGCAGTGTTGGGGGGCTGCg/g																																																																															
SESN2	83667	MSKCC	GRCh37	1	28586383	28586383	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	121	847	0	ENST00000253063.3:c.25C>A	p.Arg9Ser	p.R9S	ENST00000253063	NM_031459.4	9	Cgc/Agc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330567	65330567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	116	440	0	ENST00000342505.4:c.1079G>A	p.Arg360Gln	p.R360Q	ENST00000342505	NM_002227.2	360	cGg/cAg																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514070	69514070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	119	766	1	ENST00000294312.3:c.611C>T	p.Thr204Ile	p.T204I	ENST00000294312	NM_005117.2	204	aCc/aTc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589639	69589639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	53	317	0	ENST00000168712.1:c.214G>A	p.Gly72Ser	p.G72S	ENST00000168712	NM_002007.2	72	Ggc/Agc																																																																															
PGR	5241	MSKCC	GRCh37	11	100999062	100999062	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	102	943	0	ENST00000325455.5:c.740C>G	p.Ala247Gly	p.A247G	ENST00000325455	NM_001202474.3	247	gCg/gGg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118377315	118377315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	29	352	0	ENST00000534358.1:c.10708G>A	p.Ala3570Thr	p.A3570T	ENST00000534358	NM_005933.3	3570	Gca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49442505	49442505	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	88	452	0	ENST00000301067.7:c.4068T>A	p.Asp1356Glu	p.D1356E	ENST00000301067	NM_003482.3	1356	gaT/gaA																																																																															
POLE	5426	MSKCC	GRCh37	12	133202800	133202800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	109	798	1	ENST00000320574.5:c.6434G>A	p.Arg2145Gln	p.R2145Q	ENST00000320574	NM_006231.2	2145	cGa/cAa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28626685	28626685	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	159	419	0	ENST00000241453.7:c.611A>G	p.Glu204Gly	p.E204G	ENST00000241453	NM_004119.2	204	gAa/gGa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857484	9857484	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	65	521	0	ENST00000330684.3:c.3917G>T	p.Arg1306Met	p.R1306M	ENST00000330684	NM_001134407.1	1306	aGg/aTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862787	9862787	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	82	715	0	ENST00000330684.3:c.2516A>C	p.His839Pro	p.H839P	ENST00000330684	NM_001134407.1	839	cAc/cCc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7976202	7976202	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	118	801	0	ENST00000319144.4:c.1993T>C	p.Phe665Leu	p.F665L	ENST00000319144	NM_001139.2	665	Ttc/Ctc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968186	15968186	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	52	260	0	ENST00000268712.3:c.5099C>T	p.Pro1700Leu	p.P1700L	ENST00000268712	NM_006311.3	1700	cCa/cTa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17127295	17127295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	119	773	1	ENST00000285071.4:c.559C>T	p.Pro187Ser	p.P187S	ENST00000285071	NM_144997.5	187	Ccc/Tcc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39584410	39584410	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	56	333	0	ENST00000262039.4:c.1075G>C	p.Asp359His	p.D359H	ENST00000262039	NM_002647.2	359	Gat/Cat																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395655	45395655	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	85	347	0	ENST00000262160.6:c.479T>C	p.Val160Ala	p.V160A	ENST00000262160	NM_005901.5	160	gTa/gCa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226944	2226944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	117	619	0	ENST00000398665.3:c.4424C>T	p.Ala1475Val	p.A1475V	ENST00000398665	NM_032482.2	1475	gCg/gTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212471	5212471	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	101	745	0	ENST00000357368.4:c.4646A>G	p.Gln1549Arg	p.Q1549R	ENST00000357368	NM_002850.3	1549	cAg/cGg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61708347	61708347	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	40	239	0	ENST00000401558.2:c.3042T>G	p.His1014Gln	p.H1014Q	ENST00000401558	NM_003400.3	1014	caT/caG																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735445	40735445	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	94	666	1	ENST00000373198.4:c.3428T>A	p.Val1143Asp	p.V1143D	ENST00000373198	NM_133170.3	1143	gTc/gAc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42843748	42843748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	68	414	0	ENST00000398585.3:c.1171C>T	p.Pro391Ser	p.P391S	ENST00000398585	NM_001135099.1	391	Cct/Tct																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437314	52437314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	32	630	0	ENST00000460680.1:c.1730A>G	p.Glu577Gly	p.E577G	ENST00000460680	NM_004656.3	577	gAg/gGg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651399	52651399	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	36	505	0	ENST00000394830.3:c.1697T>C	p.Met566Thr	p.M566T	ENST00000394830	NM_018313.4	566	aTg/aCg																																																																															
TET2	54790	MSKCC	GRCh37	4	106157678	106157678	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	55	233	0	ENST00000380013.4:c.2582del	p.Asn861ThrfsTer12	p.N861Tfs*12	ENST00000380013	NM_001127208.2	860	cAa/ca																																																																															
FLT4	2324	MSKCC	GRCh37	5	180076487	180076487	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	59	241	0	ENST00000261937.6:c.58+1G>A		p.X20_splice	ENST00000261937	NM_182925.4	20																																																																																
VEGFA	7422	MSKCC	GRCh37	6	43746637	43746638	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	107	538	0	ENST00000523873.1:c.405_406del	p.Asp135GlufsTer26	p.D135Efs*26	ENST00000523873		135	gAT/g																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151849882	151849882	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143770207		P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	46	410	1	ENST00000262189.6:c.12434G>A	p.Arg4145His	p.R4145H	ENST00000262189	NM_170606.2	4145	cGt/cAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873878	151873878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	30	399	0	ENST00000262189.6:c.8660C>T	p.Ala2887Val	p.A2887V	ENST00000262189	NM_170606.2	2887	gCt/gTt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922991	39922991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	105	640	1	ENST00000378444.4:c.3717G>T	p.Gln1239His	p.Q1239H	ENST00000378444	NM_001123385.1	1239	caG/caT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0053904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	67	319	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207071	1207088	+	inframe_deletion	In_Frame_Del	DEL	CCTGCTGGGGGAAGGCTC	CCTGCTGGGGGAAGGCTC	-			P-0053904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	136	901	0	ENST00000326873.7:c.159_176del	p.Leu54_Ser59del	p.L54_S59del	ENST00000326873	NM_000455.4	53	gaCCTGCTGGGGGAAGGCTCt/gat																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602278	10602279	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACCGT			P-0053904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	151	839	0	ENST00000171111.5:c.1299_1300insACGGT	p.Cys434ThrfsTer26	p.C434Tfs*26	ENST00000171111	NM_203500.1	433	-/ACGGT																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905511	50905512	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0053904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	102	1026	0	ENST00000440232.2:c.640dup	p.Val214GlyfsTer38	p.V214Gfs*38	ENST00000440232	NM_002691.3	213	-/G																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1920195	1920195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	115	601	0	ENST00000382891.5:c.1255G>A	p.Gly419Arg	p.G419R	ENST00000382891	NM_133335.3	419	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0053906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	203	857	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717615	89717615	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	34	346	0	ENST00000371953.3:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000371953	NM_000314.4	214	Cag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29679274	29679274	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0053906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	16	284	0	ENST00000358273.4:c.7458-1G>A		p.X2486_splice	ENST00000358273	NM_001042492.2	2486																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41306605	41306605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	72	693	1	ENST00000373198.4:c.1054C>T	p.Pro352Ser	p.P352S	ENST00000373198	NM_133170.3	352	Ccc/Tcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435971	49435971	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	46	845	0	ENST00000301067.7:c.6010C>T	p.Gln2004Ter	p.Q2004*	ENST00000301067	NM_003482.3	2004	Cag/Tag																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589548	69589548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	67	290	0	ENST00000168712.1:c.305G>T	p.Gly102Val	p.G102V	ENST00000168712	NM_002007.2	102	gGc/gTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992062	72992062	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	50	767	0	ENST00000268489.5:c.1983G>C	p.Met661Ile	p.M661I	ENST00000268489	NM_006885.3	661	atG/atC																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245410	41245410	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0053906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	75	552	0	ENST00000357654.3:c.2138C>G	p.Ser713Ter	p.S713*	ENST00000357654	NM_007294.3	713	tCa/tGa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164625	36164625	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	97	792	0	ENST00000300305.3:c.1250C>G	p.Ser417Cys	p.S417C	ENST00000300305		417	tCc/tGc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5072594	5072594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	15	326	0	ENST00000381652.3:c.1744G>A	p.Val582Ile	p.V582I	ENST00000381652	NM_004972.3	582	Gtt/Att																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285738	87285738	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	91	840	0	ENST00000277120.3:c.75C>G	p.Phe25Leu	p.F25L	ENST00000277120		25	ttC/ttG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0053908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	50	327	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	99	666	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576121	88576121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	106	671	3	ENST00000360948.2:c.1552C>T	p.Arg518Cys	p.R518C	ENST00000360948	NM_001012338.2	518	Cgt/Tgt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741690	17741690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	73	546	0	ENST00000250003.3:c.361C>T	p.Arg121Cys	p.R121C	ENST00000250003	NM_002478.4	121	Cgc/Tgc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11259605	11259605	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	47	529	0	ENST00000361445.4:c.4100G>T	p.Ser1367Ile	p.S1367I	ENST00000361445	NM_004958.3	1367	aGt/aTt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28893603	28893603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	56	372	0	ENST00000282397.4:c.3243C>A	p.Asp1081Glu	p.D1081E	ENST00000282397	NM_002019.4	1081	gaC/gaA																																																																															
NF1	4763	MSKCC	GRCh37	17	29665117	29665117	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	76	435	0	ENST00000358273.4:c.6779C>G	p.Ser2260Cys	p.S2260C	ENST00000358273	NM_001042492.2	2260	tCt/tGt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2983905	2983905	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	100	664	0	ENST00000396946.4:c.625G>T	p.Ala209Ser	p.A209S	ENST00000396946	NM_032415.4	209	Gca/Tca																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467623	50467623	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	54	377	0	ENST00000331340.3:c.858G>T	p.Lys286Asn	p.K286N	ENST00000331340	NM_006060.4	286	aaG/aaT																																																																															
EZH2	2146	MSKCC	GRCh37	7	148526880	148526880	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	54	293	0	ENST00000320356.2:c.424G>C	p.Asp142His	p.D142H	ENST00000320356	NM_004456.4	142	Gat/Cat																																																																															
PREX2	80243	MSKCC	GRCh37	8	68972982	68972982	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	49	315	0	ENST00000288368.4:c.1307A>T	p.Gln436Leu	p.Q436L	ENST00000288368	NM_024870.2	436	cAa/cTa																																																																															
ABL1	25	MSKCC	GRCh37	9	133760375	133760375	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	47	729	0	ENST00000318560.5:c.2698C>G	p.Pro900Ala	p.P900A	ENST00000318560	NM_005157.4	900	Ccg/Gcg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38274849	38274849	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs779707422		P-0053954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	11	663	0	ENST00000425967.3:c.1731C>A	p.Asn577Lys	p.N577K	ENST00000425967	NM_001174067.1	577	aaC/aaA																																																																															
CDH1	999	MSKCC	GRCh37	16	68842625	68842626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0053954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	391	733	0	ENST00000261769.5:c.562_563dup	p.Tyr190SerfsTer26	p.Y190Sfs*26	ENST00000261769	NM_004360.3	187	-/GT																																																																															
AXL	558	MSKCC	GRCh37	19	41765488	41765507	+	frameshift_variant	Frame_Shift_Del	DEL	AAATCCCCAGGACCGGCCAA	AAATCCCCAGGACCGGCCAA	-			P-0053954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	411	835	0	ENST00000301178.4:c.2364_2383del	p.Asn789PhefsTer22	p.N789Ffs*22	ENST00000301178	NM_021913.4	788	ctAAATCCCCAGGACCGGCCAAgt/ctgt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	27	595	0	ENST00000250448.2:c.798C>G	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0053972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	51	289	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0053972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	141	1211	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097639	27097640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0053972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	99	666	0	ENST00000324856.7:c.3229dup	p.Ala1077GlyfsTer28	p.A1077Gfs*28	ENST00000324856	NM_006015.4	1076	-/G																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971005	21971009	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAG	GCCAG	-			P-0053972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	97	1119	0	ENST00000304494.5:c.349_353del	p.Leu117Ter	p.L117*	ENST00000304494	NM_000077.4	117	CTGGCt/t																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0053974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1182	1580	773	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0053974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	139	813	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991519	72991519	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1554	119	836	0	ENST00000268489.5:c.2526C>G	p.Ile842Met	p.I842M	ENST00000268489	NM_006885.3	842	atC/atG																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426641	212426641	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	46	635	0	ENST00000342788.4:c.2474T>C	p.Val825Ala	p.V825A	ENST00000342788	NM_005235.2	825	gTc/gCc																																																																															
MET	4233	MSKCC	GRCh37	7	116371903	116371903	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs544274181		P-0053993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	70	496	0	ENST00000397752.3:c.1382G>A	p.Arg461His	p.R461H	ENST00000397752	NM_000245.2	461	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	189	832	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101560	27101560	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	112	948	1	ENST00000324856.7:c.4842G>T	p.Gln1614His	p.Q1614H	ENST00000324856	NM_006015.4	1614	caG/caT																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741827	17741827	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	43	446	0	ENST00000250003.3:c.498C>A	p.Asp166Glu	p.D166E	ENST00000250003	NM_002478.4	166	gaC/gaA																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025895	48025895	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	196	411	0	ENST00000234420.5:c.773T>A	p.Ile258Asn	p.I258N	ENST00000234420	NM_000179.2	258	aTt/aAt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025916	48025916	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	217	448	0	ENST00000234420.5:c.794T>G	p.Phe265Cys	p.F265C	ENST00000234420	NM_000179.2	265	tTt/tGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACA			P-0053993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	2756	851	0	ENST00000275493.2:c.2311_2313dup	p.Asn771dup	p.N771dup	ENST00000275493	NM_005228.3	771	gac/gACAac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0053997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	340	948	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0053997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	124	475	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266831	18266831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	282	864	0	ENST00000222254.8:c.142G>A	p.Glu48Lys	p.E48K	ENST00000222254	NM_005027.3	48	Gag/Aag																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9778863	9778863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1477	141	926	2	ENST00000377346.4:c.1132G>A	p.Asp378Asn	p.D378N	ENST00000377346	NM_005026.3	378	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7576870	7576870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs876659384		P-0053998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	201	987	0	ENST00000269305.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000269305	NM_001126112.2	326	Gaa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249022	55249022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs567477136		P-0053998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	195	1059	0	ENST00000275493.2:c.2320G>A	p.Val774Met	p.V774M	ENST00000275493	NM_005228.3	774	Gtg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0053998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	182	972	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47108598	47108598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	108	436	2	ENST00000409792.3:c.6071G>A	p.Arg2024Gln	p.R2024Q	ENST00000409792	NM_014159.6	2024	cGa/cAa																																																																															
MGA	23269	MSKCC	GRCh37	15	42059476	42059476	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0053998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	97	521	0	ENST00000219905.7:c.9196T>C	p.Ter3066ArgextTer51	p.*3066Rext*51	ENST00000219905	NM_001164273.1	3066	Tga/Cga																																																																															
E2F3	1871	MSKCC	GRCh37	6	20490546	20490546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	139	773	0	ENST00000346618.3:c.1283C>T	p.Pro428Leu	p.P428L	ENST00000346618	NM_001949.4	428	cCc/cTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16263760	16263760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	153	993	1	ENST00000375759.3:c.10129C>A	p.Pro3377Thr	p.P3377T	ENST00000375759	NM_015001.2	3377	Ccc/Acc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0054067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	26	375	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519930		P-0054067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	26	461	1	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																															
ATM	472	MSKCC	GRCh37	11	108155043	108155043	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	21	482	0	ENST00000278616.4:c.3836G>A	p.Trp1279Ter	p.W1279*	ENST00000278616	NM_000051.3	1279	tGg/tAg																																																																															
ATM	472	MSKCC	GRCh37	11	108192134	108192134	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0054067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	31	517	0	ENST00000278616.4:c.6559G>T	p.Glu2187Ter	p.E2187*	ENST00000278616	NM_000051.3	2187	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579170	7579474	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CATTAAGTGGGTAAACTATAAAAAAACACTGACAGGAAGCCAAAGGGTGAAGAGGAATCCCAAAGTTCCAAACAAAAGAAATGCAGGGGGATACGGCCAGGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAGAAGCCCAGACGGAAACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGGACAGAAGATGACAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTGCAGGGGCCACGGGG	CATTAAGTGGGTAAACTATAAAAAAACACTGACAGGAAGCCAAAGGGTGAAGAGGAATCCCAAAGTTCCAAACAAAAGAAATGCAGGGGGATACGGCCAGGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAGAAGCCCAGACGGAAACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGGACAGAAGATGACAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTGCAGGGGCCACGGGG	-			P-0054067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	47	130	0	ENST00000269305.4:c.213_375+142del		p.X71_splice	ENST00000269305	NM_001126112.2	71																																																																																
ERCC2	2068	MSKCC	GRCh37	19	45872380	45872380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			840	116	829	1	ENST00000391945.4:c.131C>T	p.Ser44Leu	p.S44L	ENST00000391945	NM_000400.3	44	tCa/tTa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045190	47045190	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			728	42	702	0	ENST00000329236.7:c.2196+1G>T		p.X732_splice	ENST00000329236	NM_001204466.1	732																																																																																
SMAD3	4088	MSKCC	GRCh37	15	67482870	67482870	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			474	92	519	0	ENST00000327367.4:c.1274C>G	p.Ser425Cys	p.S425C	ENST00000327367	NM_005902.3	425	tCt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398282	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			560	273	435	1	ENST00000256078.4:c.37_38delinsTT	p.Gly13Phe	p.G13F	ENST00000256078	NM_033360.2	13	GGc/TTc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2979530	2979530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			625	51	495	0	ENST00000396946.4:c.717G>A	p.Met239Ile	p.M239I	ENST00000396946	NM_032415.4	239	atG/atA																																																																															
ALK	238	MSKCC	GRCh37	2	29420436	29420436	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			811	51	625	0	ENST00000389048.3:c.4045G>C	p.Asp1349His	p.D1349H	ENST00000389048	NM_004304.4	1349	Gac/Cac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931652	39931652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			769	54	616	1	ENST00000378444.4:c.2947G>A	p.Glu983Lys	p.E983K	ENST00000378444	NM_001123385.1	983	Gaa/Aaa																																																																															
POLE	5426	MSKCC	GRCh37	12	133215817	133215817	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			535	138	648	0	ENST00000320574.5:c.5446A>C	p.Asn1816His	p.N1816H	ENST00000320574	NM_006231.2	1816	Aac/Cac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573529	48573529	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	27	298	0	ENST00000342988.3:c.113G>C	p.Arg38Thr	p.R38T	ENST00000342988	NM_005359.5	38	aGa/aCa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153253766	153253766	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			457	68	371	0	ENST00000281708.4:c.967G>C	p.Glu323Gln	p.E323Q	ENST00000281708	NM_033632.3	323	Gag/Cag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332791	152332791	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			568	65	487	0	ENST00000206249.3:c.1097G>T	p.Gly366Val	p.G366V	ENST00000206249	NM_000125.3	366	gGc/gTc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63760074	63760074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	51	290	0	ENST00000279873.7:c.727G>C	p.Glu243Gln	p.E243Q	ENST00000279873	NM_032199.2	243	Gag/Cag																																																																															
ATM	472	MSKCC	GRCh37	11	108165773	108165774	+	stop_gained	Nonsense_Mutation	DNP	GA	GA	TT			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	38	363	0	ENST00000278616.4:c.4896_4897delinsTT	p.Met1632_Arg1633delinsIleTer	p.M1632_R1633delinsI*	ENST00000278616	NM_000051.3	1632	atGAga/atTTga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375587	118375587	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	29	310	0	ENST00000534358.1:c.8980C>G	p.Pro2994Ala	p.P2994A	ENST00000534358	NM_005933.3	2994	Cct/Gct																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30093420	30093420	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			439	48	508	0	ENST00000331968.5:c.1843G>C	p.Asp615His	p.D615H	ENST00000331968	NM_002742.2	615	Gac/Cac																																																																															
MGA	23269	MSKCC	GRCh37	15	42000301	42000301	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			402	42	325	0	ENST00000219905.7:c.2321-1G>A		p.X774_splice	ENST00000219905	NM_001164273.1	774																																																																																
BRCA1	672	MSKCC	GRCh37	17	41256204	41256204	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			660	93	587	1	ENST00000357654.3:c.376C>T	p.Gln126Ter	p.Q126*	ENST00000357654	NM_007294.3	126	Caa/Taa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265433	10265433	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			734	104	770	0	ENST00000340748.4:c.1613C>G	p.Ser538Cys	p.S538C	ENST00000340748		538	tCt/tGt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918208	50918208	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			909	120	1019	0	ENST00000440232.2:c.2525A>C	p.Asn842Thr	p.N842T	ENST00000440232	NM_002691.3	842	aAc/aCc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25994346	25994346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			565	78	436	0	ENST00000435504.4:c.467C>T	p.Ser156Phe	p.S156F	ENST00000435504		156	tCt/tTt																																																																															
ALK	238	MSKCC	GRCh37	2	29497991	29497991	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			769	109	598	0	ENST00000389048.3:c.2015G>C	p.Arg672Thr	p.R672T	ENST00000389048	NM_004304.4	672	aGa/aCa																																																																															
EP300	2033	MSKCC	GRCh37	22	41572904	41572904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			804	116	775	0	ENST00000263253.7:c.5189C>G	p.Ser1730Cys	p.S1730C	ENST00000263253	NM_001429.3	1730	tCt/tGt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138456647	138456647	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			724	53	515	0	ENST00000289153.2:c.703C>G	p.His235Asp	p.H235D	ENST00000289153	NM_006219.2	235	Cat/Gat																																																																															
MET	4233	MSKCC	GRCh37	7	116381062	116381062	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			917	73	643	0	ENST00000397752.3:c.1684C>G	p.Leu562Val	p.L562V	ENST00000397752	NM_000245.2	562	Ctg/Gtg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53247478	53247478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			721	89	624	1	ENST00000375401.3:c.331G>A	p.Asp111Asn	p.D111N	ENST00000375401	NM_004187.3	111	Gac/Aac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0053695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	969	836	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482438	56482438	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0053695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	312	557	0	ENST00000267101.3:c.986A>C	p.Lys329Thr	p.K329T	ENST00000267101	NM_001982.3	329	aAa/aCa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991721	72991721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	361	461	2	ENST00000268489.5:c.2324C>T	p.Ala775Val	p.A775V	ENST00000268489	NM_006885.3	775	gCg/gTg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618689	37618690	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0053695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	599	560	0	ENST00000447079.4:c.366dup	p.Leu123ThrfsTer4	p.L123Tfs*4	ENST00000447079	NM_015083.1	122	tta/ttAa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650879	37650879	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	328	347	1	ENST00000447079.4:c.2351del	p.Arg784GlnfsTer6	p.R784Qfs*6	ENST00000447079	NM_015083.1	784	cGa/ca																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71015067	71015067	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	236	432	0	ENST00000318789.4:c.1863T>G	p.Ser621Arg	p.S621R	ENST00000318789	NM_032682.5	621	agT/agG																																																																															
CDH1	999	MSKCC	GRCh37	16	68844109	68844110	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0053777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	337	527	0	ENST00000261769.5:c.698dupA	p.His233GlnfsTer11	p.H233Qfs*11	ENST00000261769	NM_004360.3	233	cac/cAac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517202		P-0053777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	54	443	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0053777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1373	37	1069	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	30	649	3	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922324	178922324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793732		P-0053777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	285	443	0	ENST00000263967.3:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000263967	NM_006218.2	365	Gaa/Aaa																																																																															
ATM	472	MSKCC	GRCh37	11	108139135	108139135	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0053777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	275	435	0	ENST00000278616.4:c.2639-2A>C		p.X880_splice	ENST00000278616	NM_000051.3	880																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151878473	151878473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	376	693	0	ENST00000262189.6:c.6472C>T	p.Pro2158Ser	p.P2158S	ENST00000262189	NM_170606.2	2158	Cct/Tct																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729153	66729153	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	21	323	0	ENST00000307102.5:c.361T>A	p.Cys121Ser	p.C121S	ENST00000307102	NM_002755.3	121	Tgc/Agc																																																																															
STK11	6794	MSKCC	GRCh37	19	1222987	1222987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	15	240	0	ENST00000326873.7:c.924G>T	p.Trp308Cys	p.W308C	ENST00000326873	NM_000455.4	308	tgG/tgT																																																																															
DDR2	4921	MSKCC	GRCh37	1	162737130	162737130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	30	179	0	ENST00000367921.3:c.1274G>T	p.Trp425Leu	p.W425L	ENST00000367921	NM_006182.2	425	tGg/tTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216316	2216316	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	13	297	0	ENST00000398665.3:c.1960C>T	p.Gln654Ter	p.Q654*	ENST00000398665	NM_032482.2	654	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599927	10599928	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0053780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	20	320	0	ENST00000171111.5:c.1648dup	p.Met550AsnfsTer24	p.M550Nfs*24	ENST00000171111	NM_203500.1	550	atg/aAtg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713385	40713385	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	18	296	0	ENST00000373198.4:c.4130G>T	p.Arg1377Leu	p.R1377L	ENST00000373198	NM_133170.3	1377	cGa/cTa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372342	55372342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	22	279	0	ENST00000297316.4:c.1032C>A	p.Asp344Glu	p.D344E	ENST00000297316	NM_022454.3	344	gaC/gaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0053787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	96	465	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578213	7578213	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0053787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	59	847	0	ENST00000269305.4:c.636delT	p.Arg213AspfsTer34	p.R213Dfs*34	ENST00000269305	NM_001126112.2	212	ttT/tt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220370	1220370	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0053791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	20	640	1	ENST00000326873.7:c.465-2A>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0053934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	292	590	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039356	47039358	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0053934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	94	729	0	ENST00000329236.7:c.754_756del	p.Ser252del	p.S252del	ENST00000329236	NM_001204466.1	250	TCC/-																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982387	201982387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	89	823	0	ENST00000359651.3:c.766G>A	p.Glu256Lys	p.E256K	ENST00000359651		256	Gag/Aag																																																																															
STAG2	10735	MSKCC	GRCh37	X	123179127	123179127	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0053934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	44	471	0	ENST00000218089.9:c.576T>A	p.Tyr192Ter	p.Y192*	ENST00000218089	NM_001042749.1	192	taT/taA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0053936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	208	467	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782177		P-0053936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	235	727	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524486	44524486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	94	257	0	ENST00000291552.4:c.71T>C	p.Ile24Thr	p.I24T	ENST00000291552	NM_006758.2	24	aTt/aCt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900164	101900164	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	85	299	0	ENST00000374994.4:c.598A>G	p.Thr200Ala	p.T200A	ENST00000374994	NM_004612.2	200	Aca/Gca																																																																															
YAP1	10413	MSKCC	GRCh37	11	101984938	101984938	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	143	310	0	ENST00000282441.5:c.385C>G	p.Pro129Ala	p.P129A	ENST00000282441	NM_001130145.2	129	Cca/Gca																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22008921	22008921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	277	735	1	ENST00000276925.6:c.32G>T	p.Gly11Val	p.G11V	ENST00000276925	NM_004936.3	11	gGg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0053937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	218	799	0	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56774100	56774100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	146	482	0	ENST00000337432.4:c.451G>A	p.Val151Met	p.V151M	ENST00000337432	NM_058216.2	151	Gtg/Atg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129287	152129287	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0053937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	233	846	0	ENST00000206249.3:c.240C>A	p.Tyr80Ter	p.Y80*	ENST00000206249	NM_000125.3	80	taC/taA																																																																															
TERT	7015	MSKCC	GRCh37	5	1294392	1294392	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	98	604	0	ENST00000310581.5:c.609G>A	p.Trp203Ter	p.W203*	ENST00000310581	NM_198253.2	203	tgG/tgA																																																																															
BCOR	54880	MSKCC	GRCh37	X	39916529	39916529	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	221	715	0	ENST00000378444.4:c.4474C>G	p.His1492Asp	p.H1492D	ENST00000378444	NM_001123385.1	1492	Cat/Gat																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0053848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	30	333	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	130	492	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																															
TP63	8626	MSKCC	GRCh37	3	189526176	189526176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	99	841	0	ENST00000264731.3:c.440C>T	p.Ser147Leu	p.S147L	ENST00000264731	NM_003722.4	147	tCg/tTg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969401	44969401	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	131	261	0	ENST00000377967.4:c.4083T>G	p.Cys1361Trp	p.C1361W	ENST00000377967	NM_021140.2	1361	tgT/tgG																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543860	212543860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	205	434	1	ENST00000342788.4:c.1539G>T	p.Trp513Cys	p.W513C	ENST00000342788	NM_005235.2	513	tgG/tgT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748599	40748599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	178	488	0	ENST00000373198.4:c.2917C>T	p.Pro973Ser	p.P973S	ENST00000373198	NM_133170.3	973	Cct/Tct																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249580	110249580	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0053848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	387	1204	0	ENST00000374672.4:c.1095C>G	p.Tyr365Ter	p.Y365*	ENST00000374672	NM_004235.4	365	taC/taG																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307316	118307316	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs9332745		P-0053849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			13	14	2	0	ENST00000534358.1:c.89C>G	p.Ala30Gly	p.A30G	ENST00000534358	NM_005933.3	30	gCc/gGc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589615	67589616	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTCGAGAAT			P-0053849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	15	195	0	ENST00000274335.5:c.1379_1387dup	p.Glu462_Tyr463insCysArgGlu	p.E462_Y463insCRE	ENST00000274335		460	agt/aGTCGAGAATgt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589625	67589625	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	22	201	0	ENST00000274335.5:c.1388A>G	p.Tyr463Cys	p.Y463C	ENST00000274335		463	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			709	98	586	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089640	27089640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			840	135	832	0	ENST00000324856.7:c.2596C>T	p.Arg866Trp	p.R866W	ENST00000324856	NM_006015.4	866	Cgg/Tgg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40375526	40375526	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			857	48	696	0	ENST00000293328.3:c.424C>G	p.Leu142Val	p.L142V	ENST00000293328	NM_012448.3	142	Ctc/Gtc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385159	41385159	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	57	855	2	ENST00000373198.4:c.802G>T	p.Val268Leu	p.V268L	ENST00000373198	NM_133170.3	268	Gtg/Ttg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419935	41419935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			885	110	735	0	ENST00000373198.4:c.386G>A	p.Gly129Asp	p.G129D	ENST00000373198	NM_133170.3	129	gGc/gAc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143003228	143003228	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs148929063		P-0053613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			544	87	464	0	ENST00000262992.4:c.2598G>T	p.Gln866His	p.Q866H	ENST00000262992	NM_001101669.1	866	caG/caT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038867	47038868	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0053613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			494	63	459	0	ENST00000329236.7:c.643_644insT	p.Glu215ValfsTer9	p.E215Vfs*9	ENST00000329236	NM_001204466.1	215	gag/gTag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0053816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	82	364	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0053816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	96	749	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0053816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	131	781	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604656	48604656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	27	415	0	ENST00000342988.3:c.1478A>G	p.Asp493Gly	p.D493G	ENST00000342988	NM_005359.5	493	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0053823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	18	359	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0053823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	155	689	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101228	27101229	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0053823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	81	591	0	ENST00000324856.7:c.4510_4511del	p.Met1504AspfsTer3	p.M1504Dfs*3	ENST00000324856	NM_006015.4	1504	ATg/g																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33446588	33446588	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	141	708	0	ENST00000335858.7:c.45G>C	p.Glu15Asp	p.E15D	ENST00000335858	NM_133629.2	15	gaG/gaC																																																																															
MSH3	4437	MSKCC	GRCh37	5	80149965	80149966	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0053823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	13	263	0	ENST00000265081.6:c.2831_2832insGA	p.Asn944LysfsTer14	p.N944Kfs*14	ENST00000265081	NM_002439.4	944	aat/aAGat																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508121	106508121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	107	226	0	ENST00000359195.3:c.115C>A	p.Pro39Thr	p.P39T	ENST00000359195	NM_002649.2	39	Ccc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0053827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	160	931	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0053827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	30	248	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0053827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	39	334	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112173968	112173968	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	25	305	0	ENST00000257430.4:c.2677G>T	p.Glu893Ter	p.E893*	ENST00000257430	NM_000038.5	893	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0053827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	43	570	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9770571	9770571	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143116020		P-0053827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	122	849	0	ENST00000377346.4:c.58G>A	p.Val20Ile	p.V20I	ENST00000377346	NM_005026.3	20	Gtt/Att																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	32	556	1	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857020	9857020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	31	259	1	ENST00000330684.3:c.4381G>A	p.Glu1461Lys	p.E1461K	ENST00000330684	NM_001134407.1	1461	Gaa/Aaa																																																																															
ATM	472	MSKCC	GRCh37	11	108160414	108160414	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	26	272	0	ENST00000278616.4:c.4322T>C	p.Ile1441Thr	p.I1441T	ENST00000278616	NM_000051.3	1441	aTa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0053829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	165	464	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114711311	114711311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	107	393	0	ENST00000543371.1:c.326C>T	p.Pro109Leu	p.P109L	ENST00000543371	NM_001198531.1	109	cCc/cTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573583	48573591	+	inframe_deletion	In_Frame_Del	DEL	CTTTAATAA	CTTTAATAA	-			P-0053829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	68	287	0	ENST00000342988.3:c.168_176del	p.Leu57_Thr59del	p.L57_T59del	ENST00000342988	NM_005359.5	56	tCTTTAATAAca/tca																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103775	47103777	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0053829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	209	497	0	ENST00000409792.3:c.6169_6171del	p.Pro2057del	p.P2057del	ENST00000409792	NM_014159.6	2057	CCT/-																																																																															
RASA1	5921	MSKCC	GRCh37	5	86642514	86642514	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	84	292	0	ENST00000274376.6:c.1075C>T	p.Gln359Ter	p.Q359*	ENST00000274376	NM_002890.2	359	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0053830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	106	437	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
STK11	6794	MSKCC	GRCh37	19	1222983	1222983	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs398123406		P-0053830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	139	697	1	ENST00000326873.7:c.921-1G>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10600326	10600326	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0053830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	135	792	0	ENST00000171111.5:c.1529C>T	p.Ala510Val	p.A510V	ENST00000171111	NM_203500.1	510	gCa/gTa																																																																															
SDHD	6392	MSKCC	GRCh37	11	111965564	111965564	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	55	222	0	ENST00000375549.3:c.350G>T	p.Gly117Val	p.G117V	ENST00000375549	NM_003002.3	117	gGg/gTg																																																																															
YES1	7525	MSKCC	GRCh37	18	742954	742954	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0053830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	70	311	0	ENST00000314574.4:c.1024G>T	p.Glu342Ter	p.E342*	ENST00000314574	NM_005433.3	342	Gaa/Taa																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175891	24175891	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0053830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	93	585	0	ENST00000263121.7:c.1118+1G>A		p.X373_splice	ENST00000263121	NM_003073.3	373																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32163837	32163837	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	113	694	0	ENST00000375023.3:c.5389G>T	p.Asp1797Tyr	p.D1797Y	ENST00000375023	NM_004557.3	1797	Gac/Tac																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128347845	128347845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	192	670	1	ENST00000265960.3:c.660G>T	p.Glu220Asp	p.E220D	ENST00000265960	NM_001006617.1	220	gaG/gaT																																																																															
STK11	6794	MSKCC	GRCh37	19	1221229	1221229	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	92	745	0	ENST00000326873.7:c.752G>T	p.Gly251Val	p.G251V	ENST00000326873	NM_000455.4	251	gGt/gTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600006	10600006	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	85	757	0	ENST00000171111.5:c.1570G>T	p.Gly524Cys	p.G524C	ENST00000171111	NM_203500.1	524	Ggc/Tgc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085992	16085992	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	59	527	0	ENST00000281043.3:c.1168G>C	p.Glu390Gln	p.E390Q	ENST00000281043	NM_005378.4	390	Gag/Cag																																																																															
TET2	54790	MSKCC	GRCh37	4	106155778	106155778	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	23	365	0	ENST00000380013.4:c.679G>T	p.Glu227Ter	p.E227*	ENST00000380013	NM_001127208.2	227	Gaa/Taa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143326460	143326460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	33	292	0	ENST00000262992.4:c.154G>T	p.Ala52Ser	p.A52S	ENST00000262992	NM_001101669.1	52	Gct/Tct																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435632	149435632	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	54	654	0	ENST00000286301.3:c.2511C>A	p.Asp837Glu	p.D837E	ENST00000286301	NM_005211.3	837	gaC/gaA																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509714	106509714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	86	512	0	ENST00000359195.3:c.1708G>A	p.Glu570Lys	p.E570K	ENST00000359195	NM_002649.2	570	Gag/Aag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53253977	53253977	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	54	329	0	ENST00000375401.3:c.95C>G	p.Ala32Gly	p.A32G	ENST00000375401	NM_004187.3	32	gCg/gGg																																																																															
NF1	4763	MSKCC	GRCh37	17	29546043	29546044	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0053835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	64	447	0	ENST00000358273.4:c.1548_1549delinsT	p.Glu517LysfsTer9	p.E517Kfs*9	ENST00000358273	NM_001042492.2	516	ccCGaa/ccTaa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123705	11123705	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053871-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			631	194	595	0	ENST00000344626.4:c.2355G>C	p.Lys785Asn	p.K785N	ENST00000344626	NM_003072.3	785	aaG/aaC																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053871-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			463	105	424	1	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0053871-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			736	218	748	0	ENST00000269305.4:c.376-1G>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
MET	4233	MSKCC	GRCh37	7	116339299	116339299	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053871-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			465	97	368	0	ENST00000397752.3:c.161A>T	p.Asn54Ile	p.N54I	ENST00000397752	NM_000245.2	54	aAt/aTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0053871-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	138	454	0	ENST00000304494.5:c.151-1G>C		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41400125	41400125	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053871-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			784	162	514	0	ENST00000373198.4:c.634C>T	p.Gln212Ter	p.Q212*	ENST00000373198	NM_133170.3	212	Cag/Tag																																																																															
CDK8	1024	MSKCC	GRCh37	13	26956953	26956953	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0053871-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			305	67	244	0	ENST00000381527.3:c.459A>T	p.Lys153Asn	p.K153N	ENST00000381527	NM_001260.1	153	aaA/aaT																																																																															
CD276	80381	MSKCC	GRCh37	15	73994830	73994830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053871-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			310	82	309	0	ENST00000318443.5:c.314C>T	p.Ala105Val	p.A105V	ENST00000318443	NM_001024736.1	105	gCa/gTa																																																																															
TP63	8626	MSKCC	GRCh37	3	189607219	189607219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053871-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1512	81	722	0	ENST00000264731.3:c.1598C>T	p.Ser533Phe	p.S533F	ENST00000264731	NM_003722.4	533	tCc/tTc																																																																															
NBN	4683	MSKCC	GRCh37	8	90993122	90993122	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0053871-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			316	33	277	0	ENST00000265433.3:c.321-1G>A		p.X107_splice	ENST00000265433	NM_002485.4	107																																																																																
BCOR	54880	MSKCC	GRCh37	X	39932017	39932017	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053871-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			351	89	303	0	ENST00000378444.4:c.2582G>C	p.Arg861Pro	p.R861P	ENST00000378444	NM_001123385.1	861	cGc/cCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0053920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	123	371	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913273		P-0053920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	9	222	0	ENST00000263967.3:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000263967	NM_006218.2	542	Gaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577562	7577563	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGT			P-0053920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	205	862	0	ENST00000269305.4:c.716_718dup	p.Asn239dup	p.N239dup	ENST00000269305	NM_001126112.2	239	agt/aACAgt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691763	30691763	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0053920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	97	359	0	ENST00000359013.4:c.340A>G	p.Arg114Gly	p.R114G	ENST00000359013	NM_001024847.2	114	Aga/Gga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0053925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	19	346	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	32	244	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0053925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	183	411	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967270	134967270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	86	699	1	ENST00000398015.3:c.2609G>A	p.Arg870Gln	p.R870Q	ENST00000398015	NM_004441.4	870	cGg/cAg																																																																															
ATM	472	MSKCC	GRCh37	11	108196879	108196880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0053925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	91	340	0	ENST00000278616.4:c.6908dupA	p.Glu2304GlyfsTer69	p.E2304Gfs*69	ENST00000278616	NM_000051.3	2301	gca/gcAa																																																																															
NBN	4683	MSKCC	GRCh37	8	90955513	90955513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	65	421	0	ENST00000265433.3:c.2152G>A	p.Glu718Lys	p.E718K	ENST00000265433	NM_002485.4	718	Gaa/Aaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266050	41266639	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	CAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATG	CAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATG	-			P-0053925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	30	320	0	ENST00000349496.5:c.51_440del		p.X17_splice	ENST00000349496	NM_001904.3	17	cCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGca/cca																																																																															
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	299	747	1	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0053926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	163	402	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417865	138417865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	371	418	0	ENST00000289153.2:c.1654G>A	p.Glu552Lys	p.E552K	ENST00000289153	NM_006219.2	552	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175907	112175907	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0053926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	90	189	1	ENST00000257430.4:c.4616C>G	p.Ser1539Ter	p.S1539*	ENST00000257430	NM_000038.5	1539	tCa/tGa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729094	66729099	+	inframe_deletion	In_Frame_Del	DEL	TGGAGA	TGGAGA	-			P-0053931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	54	514	0	ENST00000307102.5:c.303_308delGGAGAT	p.Glu102_Ile103del	p.E102_I103del	ENST00000307102	NM_002755.3	101	cTGGAGAtc/ctc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0035547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	40	365	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0035547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	24	570	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584709	48584709	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0035547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			9	27	332	0	ENST00000342988.3:c.788-1G>C		p.X263_splice	ENST00000342988	NM_005359.5	263																																																																																
ERCC2	2068	MSKCC	GRCh37	19	45871906	45871906	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052297-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			991	111	748	0	ENST00000391945.4:c.342C>A	p.Asn114Lys	p.N114K	ENST00000391945	NM_000400.3	114	aaC/aaA																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165458	47165486	+	frameshift_variant	Frame_Shift_Del	DEL	ATTAGAACTGTTATTGGTGTATGTGGCAA	ATTAGAACTGTTATTGGTGTATGTGGCAA	-			P-0052297-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			687	57	590	0	ENST00000409792.3:c.640_668del	p.Leu214GlyfsTer13	p.L214Gfs*13	ENST00000409792	NM_014159.6	214	TTGCCACATACACCAATAACAGTTCTAATg/g																																																																															
ROS1	6098	MSKCC	GRCh37	6	117647558	117647558	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052297-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			721	85	566	0	ENST00000368508.3:c.5386T>G	p.Leu1796Val	p.L1796V	ENST00000368508	NM_002944.2	1796	Tta/Gta																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0052310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	31	499	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579349	7579349	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			621	71	724	0	ENST00000269305.4:c.338T>C	p.Phe113Ser	p.F113S	ENST00000269305	NM_001126112.2	113	tTc/tCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0053282-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	63	444	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108236153	108236153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053282-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			561	106	624	1	ENST00000278616.4:c.9089G>T	p.Gly3030Val	p.G3030V	ENST00000278616	NM_000051.3	3030	gGa/gTa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483934	88483934	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0053282-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			856	154	701	0	ENST00000360948.2:c.1636G>T	p.Glu546Ter	p.E546*	ENST00000360948	NM_001012338.2	546	Gag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108106530	108106530	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0053282-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	27	349	0	ENST00000278616.4:c.465C>A	p.Tyr155Ter	p.Y155*	ENST00000278616	NM_000051.3	155	taC/taA																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082484	16082484	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053282-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			887	182	608	0	ENST00000281043.3:c.298G>T	p.Gly100Trp	p.G100W	ENST00000281043	NM_005378.4	100	Ggg/Tgg																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874278	155874278	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053282-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			499	75	493	0	ENST00000368323.3:c.253A>G	p.Met85Val	p.M85V	ENST00000368323	NM_006912.5	85	Atg/Gtg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715613	30715613	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053282-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			316	18	301	0	ENST00000359013.4:c.1346A>T	p.Tyr449Phe	p.Y449F	ENST00000359013	NM_001024847.2	449	tAc/tTc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125514027	125514027	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053282-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			507	61	473	2	ENST00000428830.2:c.965G>T	p.Arg322Leu	p.R322L	ENST00000428830	NM_001114121.2	322	cGc/cTc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680789	88680789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053282-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	66	659	0	ENST00000360948.2:c.468G>T	p.Gln156His	p.Q156H	ENST00000360948	NM_001012338.2	156	caG/caT																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226761	2226761	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053282-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			932	69	621	2	ENST00000398665.3:c.4241G>T	p.Arg1414Leu	p.R1414L	ENST00000398665	NM_032482.2	1414	cGg/cTg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523289	9523289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053282-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			878	73	619	0	ENST00000353224.5:c.1948C>A	p.Gln650Lys	p.Q650K	ENST00000353224	NM_177990.2	650	Cag/Aag																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867410	35867410	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0053282-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			283	145	406	1	ENST00000303115.3:c.224G>T	p.Gly75Val	p.G75V	ENST00000303115	NM_002185.3	75	gGg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878400	151878400	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053282-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			717	114	626	0	ENST00000262189.6:c.6545G>C	p.Arg2182Thr	p.R2182T	ENST00000262189	NM_170606.2	2182	aGa/aCa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006890	47006890	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053282-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			883	108	754	0	ENST00000329236.7:c.10G>T	p.Glu4Ter	p.E4*	ENST00000329236	NM_001204466.1	4	Gaa/Taa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519337	176519338	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0053282-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	74	737	0	ENST00000292408.4:c.743_744delinsA	p.Arg248HisfsTer37	p.R248Hfs*37	ENST00000292408	NM_213647.1	248	cGG/cA																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562482	21562483	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGGCG	rs550642106		P-0053615-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			99	9	101	0	ENST00000382592.4:c.1431_1436dup	p.Pro479_Ala480dup	p.P479_A480dup	ENST00000382592	NM_014572.2	479	ccg/ccCGCCCCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0053615-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			632	132	728	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249013	55249014	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACCCCC			P-0053615-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			634	218	736	0	ENST00000275493.2:c.2314_2319dupCCCCAC	p.Pro772_His773dup	p.P772_H773dup	ENST00000275493	NM_005228.3	772	aac/aACCCCCac																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641126	3641126	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053615-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	68	977	0	ENST00000294008.3:c.2513A>T	p.Asp838Val	p.D838V	ENST00000294008	NM_032444.2	838	gAc/gTc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013734	12013734	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053615-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	40	215	0	ENST00000353533.5:c.676A>T	p.Ile226Phe	p.I226F	ENST00000353533	NM_003010.3	226	Att/Ttt																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538907	23538907	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053615-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			564	54	673	0	ENST00000380871.4:c.532A>G	p.Lys178Glu	p.K178E	ENST00000380871	NM_006167.3	178	Aag/Gag																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0053699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	36	316	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0053699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	137	328	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	43	280	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143981	11143981	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	63	589	2	ENST00000344626.4:c.3562G>T	p.Asp1188Tyr	p.D1188Y	ENST00000344626	NM_003072.3	1188	Gac/Tac																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798461	45798461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	78	926	1	ENST00000372115.3:c.508C>T	p.Arg170Trp	p.R170W	ENST00000372115	NM_001048171.1	170	Cgg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748602	40748602	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	73	452	0	ENST00000373198.4:c.2914C>T	p.Arg972Ter	p.R972*	ENST00000373198	NM_133170.3	972	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0053701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	119	459	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0053701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	169	289	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119104	70119104	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	141	533	0	ENST00000245479.2:c.676G>T	p.Glu226Ter	p.E226*	ENST00000245479	NM_000346.3	226	Gag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108178713	108178713	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0053701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	60	258	0	ENST00000278616.4:c.5762+2T>G		p.X1921_splice	ENST00000278616	NM_000051.3	1921																																																																																
FOXP1	27086	MSKCC	GRCh37	3	71096192	71096193	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0053701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	142	428	0	ENST00000318789.4:c.564dup	p.Gln189AlafsTer106	p.Q189Afs*106	ENST00000318789	NM_032682.5	188	-/G																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797254	32797254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	305	1069	0	ENST00000374899.4:c.1855C>T	p.Arg619Trp	p.R619W	ENST00000374899	NM_018833.2	619	Cgg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140476826	140476826	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	49	563	0	ENST00000288602.6:c.1580T>C	p.Ile527Thr	p.I527T	ENST00000288602	NM_004333.4	527	aTt/aCt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	9	345	0	ENST00000349496.5:c.110C>A	p.Ser37Tyr	p.S37Y	ENST00000349496	NM_001904.3	37	tCt/tAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	119	386	0	ENST00000288602.6:c.1781A>C	p.Asp594Ala	p.D594A	ENST00000288602	NM_004333.4	594	gAt/gCt																																																																															
CCND1	595	MSKCC	GRCh37	11	69466000	69466000	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	183	1086	1	ENST00000227507.2:c.838G>T	p.Glu280Ter	p.E280*	ENST00000227507	NM_053056.2	280	Gag/Tag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86637110	86637110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	28	257	0	ENST00000274376.6:c.1021C>T	p.Arg341Trp	p.R341W	ENST00000274376	NM_002890.2	341	Cgg/Tgg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164727	36164727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	145	963	0	ENST00000300305.3:c.1148C>T	p.Pro383Leu	p.P383L	ENST00000300305		383	cCg/cTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602679	10602679	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	281	1115	0	ENST00000171111.5:c.899A>G	p.Tyr300Cys	p.Y300C	ENST00000171111	NM_203500.1	300	tAc/tGc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115272916	115272916	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs149300730		P-0053706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	125	669	0	ENST00000438362.2:c.1457A>G	p.Asn486Ser	p.N486S	ENST00000438362	NM_001242891.1	486	aAt/aGt																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588860	69588860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	183	945	0	ENST00000168712.1:c.376G>A	p.Val126Met	p.V126M	ENST00000168712	NM_002007.2	126	Gtg/Atg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43708616	43708616	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0053706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	125	454	0	ENST00000382044.4:c.4682-2A>C		p.X1561_splice	ENST00000382044	NM_001141980.1	1561																																																																																
STK11	6794	MSKCC	GRCh37	19	1221994	1221994	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	205	825	0	ENST00000326873.7:c.910del	p.Arg304GlyfsTer32	p.R304Gfs*32	ENST00000326873	NM_000455.4	303	atC/at																																																																															
SRC	6714	MSKCC	GRCh37	20	36026107	36026107	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	260	1073	0	ENST00000358208.4:c.709G>T	p.Ala237Ser	p.A237S	ENST00000358208		237	Gcc/Tcc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220640	1220640	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	361	1056	0	ENST00000326873.7:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000326873	NM_000455.4	220	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0053707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	257	459	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
BTK	695	MSKCC	GRCh37	X	100629541	100629541	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	214	703	0	ENST00000308731.7:c.223C>A	p.Pro75Thr	p.P75T	ENST00000308731	NM_000061.2	75	Cca/Aca																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609534	81609534	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	238	571	0	ENST00000298171.2:c.1132C>G	p.Leu378Val	p.L378V	ENST00000298171	NM_000369.2	378	Cta/Gta																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832143	72832143	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	182	611	0	ENST00000268489.5:c.4438A>T	p.Thr1480Ser	p.T1480S	ENST00000268489	NM_006885.3	1480	Act/Tct																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610073	10610073	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0053707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	281	759	0	ENST00000171111.5:c.637del	p.Glu213ArgfsTer17	p.E213Rfs*17	ENST00000171111	NM_203500.1	213	Gag/ag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165755	47165755	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0053707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	242	573	0	ENST00000409792.3:c.371T>G	p.Leu124Ter	p.L124*	ENST00000409792	NM_014159.6	124	tTa/tGa																																																																															
APC	324	MSKCC	GRCh37	5	112176434	112176434	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	136	336	0	ENST00000257430.4:c.5143del	p.Asp1715ThrfsTer29	p.D1715Tfs*29	ENST00000257430	NM_000038.5	1715	Gac/ac																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149450097	149450097	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	275	989	0	ENST00000286301.3:c.1120T>A	p.Ser374Thr	p.S374T	ENST00000286301	NM_005211.3	374	Tct/Act																																																																															
FLT4	2324	MSKCC	GRCh37	5	180036043	180036043	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	188	790	0	ENST00000261937.6:c.3818C>A	p.Thr1273Lys	p.T1273K	ENST00000261937	NM_182925.4	1273	aCa/aAa																																																																															
PIM1	5292	MSKCC	GRCh37	6	37139034	37139034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	227	893	1	ENST00000373509.5:c.374C>T	p.Pro125Leu	p.P125L	ENST00000373509	NM_002648.3	125	cCg/cTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410026	139410026	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	357	1251	2	ENST00000277541.6:c.1812C>G	p.Ile604Met	p.I604M	ENST00000277541	NM_017617.3	604	atC/atG																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410060	139410060	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	335	1207	0	ENST00000277541.6:c.1778C>G	p.Pro593Arg	p.P593R	ENST00000277541	NM_017617.3	593	cCa/cGa																																																																															
MED12	9968	MSKCC	GRCh37	X	70360639	70360640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0053707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	117	532	0	ENST00000374080.3:c.6201dup	p.Gln2068ThrfsTer97	p.Q2068Tfs*97	ENST00000374080		2067	caa/cAaa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933686	39933686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	182	320	0	ENST00000378444.4:c.913C>T	p.Pro305Ser	p.P305S	ENST00000378444	NM_001123385.1	305	Cct/Tct																																																																															
CDH1	999	MSKCC	GRCh37	16	68842726	68842726	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	183	417	0	ENST00000261769.5:c.662A>C	p.Asp221Ala	p.D221A	ENST00000261769	NM_004360.3	221	gAt/gCt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845947	151845947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	153	394	1	ENST00000262189.6:c.13065G>A	p.Met4355Ile	p.M4355I	ENST00000262189	NM_170606.2	4355	atG/atA																																																																															
ABL1	25	MSKCC	GRCh37	9	133759816	133759816	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	328	735	0	ENST00000318560.5:c.2140del	p.Leu714CysfsTer62	p.L714Cfs*62	ENST00000318560	NM_005157.4	713	ttC/tt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0053757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	20	426	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0053757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	43	392	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
CBFB	865	MSKCC	GRCh37	16	67100693	67100693	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	65	604	0	ENST00000412916.2:c.391C>T	p.Arg131Ter	p.R131*	ENST00000412916		131	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0053774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	60	390	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602932	10602932	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0053774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	220	880	2	ENST00000171111.5:c.646A>T	p.Lys216Ter	p.K216*	ENST00000171111	NM_203500.1	216	Aag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221994	1221994	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	214	859	0	ENST00000326873.7:c.909C>G	p.Ile303Met	p.I303M	ENST00000326873	NM_000455.4	303	atC/atG																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984435	201984436	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0053774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	160	646	0	ENST00000359651.3:c.1102dup	p.Gln368ProfsTer103	p.Q368Pfs*103	ENST00000359651		367	ctc/ctCc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741858	17741858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053278-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			201	21	147	0	ENST00000250003.3:c.529G>A	p.Ala177Thr	p.A177T	ENST00000250003	NM_002478.4	177	Gcc/Acc																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0053278-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	320	522	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044971	47044971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053278-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	113	867	0	ENST00000329236.7:c.2063G>A	p.Arg688His	p.R688H	ENST00000329236	NM_001204466.1	688	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578198	7578202	+	frameshift_variant	Frame_Shift_Del	DEL	CACCA	CACCA	-			P-0053278-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			697	153	617	0	ENST00000269305.4:c.647_651del	p.Val216GlyfsTer4	p.V216Gfs*4	ENST00000269305	NM_001126112.2	216	gTGGTG/g																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233597	69233597	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053278-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			283	16	304	0	ENST00000462284.1:c.1462A>G	p.Ile488Val	p.I488V	ENST00000462284	NM_002392.5	488	Att/Gtt																																																																															
INSR	3643	MSKCC	GRCh37	19	7267761	7267761	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053278-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			643	151	609	0	ENST00000302850.5:c.247A>G	p.Met83Val	p.M83V	ENST00000302850	NM_000208.2	83	Atg/Gtg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879465	151879471	+	frameshift_variant	Frame_Shift_Del	DEL	TTATGGA	TTATGGA	-			P-0053278-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			645	160	501	0	ENST00000262189.6:c.5474_5480del	p.Phe1825Ter	p.F1825*	ENST00000262189	NM_170606.2	1825	tTCCATAAa/ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0053281-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			760	187	630	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0053281-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			631	116	494	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974768	21974768	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053281-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	101	275	0	ENST00000304494.5:c.59N>A	p.Ala20Glu	p.A20E	ENST00000304494	NM_000077.4	20	gCg/gAg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298704	15298704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053281-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1335	106	797	3	ENST00000263388.2:c.1594C>T	p.Arg532Cys	p.R532C	ENST00000263388	NM_000435.2	532	Cgc/Tgc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62326717	62326717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053281-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	244	903	0	ENST00000508582.2:c.3608G>A	p.Ser1203Asn	p.S1203N	ENST00000508582		1203	aGc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577093	7577093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	359	1006	0	ENST00000269305.4:c.845G>C	p.Arg282Pro	p.R282P	ENST00000269305	NM_001126112.2	282	cGg/cCg																																																																															
MED12	9968	MSKCC	GRCh37	X	70339267	70339267	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	66	790	0	ENST00000374080.3:c.144G>C	p.Gln48His	p.Q48H	ENST00000374080		48	caG/caC																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0053659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	110	380	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0053659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	85	424	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	91	407	0	ENST00000369535.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000369535	NM_002524.4	12	Ggt/Agt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	120	483	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692961	89692961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	92	486	0	ENST00000371953.3:c.445C>T	p.Gln149Ter	p.Q149*	ENST00000371953	NM_000314.4	149	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	100	385	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																															
APC	324	MSKCC	GRCh37	5	112173590	112173590	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	67	350	0	ENST00000257430.4:c.2299C>T	p.Gln767Ter	p.Q767*	ENST00000257430	NM_000038.5	767	Cag/Tag																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68331718	68331718	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0053659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	38	124	1	ENST00000487270.1:c.316-2A>T		p.X106_splice	ENST00000487270	NM_133509.3	106																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157522130	157522130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	203	690	0	ENST00000346085.5:c.4402C>T	p.Arg1468Cys	p.R1468C	ENST00000346085	NM_020732.3	1468	Cgc/Tgc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984363	201984363	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	179	660	0	ENST00000359651.3:c.1028A>G	p.Glu343Gly	p.E343G	ENST00000359651		343	gAa/gGa																																																																															
CALR	811	MSKCC	GRCh37	19	13054559	13054560	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAG			P-0053659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	103	487	0	ENST00000316448.5:c.1090_1092dup	p.Glu364dup	p.E364dup	ENST00000316448	NM_004343.3	364	-/GAG																																																																															
PRDM1	639	MSKCC	GRCh37	6	106547389	106547389	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	107	410	0	ENST00000369096.4:c.626A>T	p.His209Leu	p.H209L	ENST00000369096	NM_001198.3	209	cAc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0053660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	165	417	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0053660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	103	601	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0053660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	178	621	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112128187	112128187	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0053660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	187	364	0	ENST00000257430.4:c.690del	p.Ile231TyrfsTer62	p.I231Yfs*62	ENST00000257430	NM_000038.5	230	cgT/cg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129867	55129867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	178	483	0	ENST00000257290.5:c.401C>T	p.Thr134Met	p.T134M	ENST00000257290	NM_006206.4	134	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0053662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	30	624	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0053666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	291	562	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591826	48591826	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	247	560	0	ENST00000342988.3:c.989A>C	p.Glu330Ala	p.E330A	ENST00000342988	NM_005359.5	330	gAa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0053667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	99	664	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	29	419	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
EP300	2033	MSKCC	GRCh37	22	41573977	41573977	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201569846		P-0053667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	40	613	1	ENST00000263253.7:c.6262C>T	p.Arg2088Trp	p.R2088W	ENST00000263253	NM_001429.3	2088	Cgg/Tgg																																																																															
EED	8726	MSKCC	GRCh37	11	85967495	85967495	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	29	371	0	ENST00000263360.6:c.493G>C	p.Val165Leu	p.V165L	ENST00000263360	NM_003797.3	165	Gta/Cta																																																																															
SDHA	6389	MSKCC	GRCh37	5	251531	251531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	41	444	0	ENST00000264932.6:c.1742G>A	p.Gly581Glu	p.G581E	ENST00000264932	NM_004168.2	581	gGa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053704-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			931	69	825	0	ENST00000269305.4:c.487T>A	p.Tyr163Asn	p.Y163N	ENST00000269305	NM_001126112.2	163	Tac/Aac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629615	187629615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053704-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			802	50	564	1	ENST00000441802.2:c.1367C>T	p.Ala456Val	p.A456V	ENST00000441802	NM_005245.3	456	gCa/gTa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	93	704	0	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579361	7579361	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	92	900	0	ENST00000269305.4:c.326T>G	p.Phe109Cys	p.F109C	ENST00000269305	NM_001126112.2	109	tTc/tGc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060912	38060912	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	50	672	1	ENST00000250448.2:c.1077delC	p.Ile360Ter	p.I360*	ENST00000250448	NM_004496.3	359	ccC/cc																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518109	69518109	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	176	888	1	ENST00000294312.3:c.256G>T	p.Ala86Ser	p.A86S	ENST00000294312	NM_005117.2	86	Gct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0053733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	30	372	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578451	7578459	+	inframe_deletion	In_Frame_Del	DEL	ATGGCGCGG	ATGGCGCGG	-			P-0053733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1434	111	675	0	ENST00000269305.4:c.471_479del	p.Arg158_Met160del	p.R158_M160del	ENST00000269305	NM_001126112.2	157	gtCCGCGCCATg/gtg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430653	181430653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1205	124	532	0	ENST00000325404.1:c.505G>A	p.Gly169Ser	p.G169S	ENST00000325404	NM_003106.3	169	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0053739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	338	915	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690810	89690813	+	frameshift_variant	Frame_Shift_Del	DEL	GAAA	GAAA	-			P-0053739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	50	217	0	ENST00000371953.3:c.219_222delAAGA	p.Glu73AspfsTer25	p.E73Dfs*25	ENST00000371953	NM_000314.4	73	GAAAga/ga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099436	27099440	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTA	TCCTA	-			P-0053739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	115	585	0	ENST00000324856.7:c.3674_3678del	p.Ser1225Ter	p.S1225*	ENST00000324856	NM_006015.4	1225	TCCTAt/t																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115279421	115279422	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAGCTGAACGTTCCCTTCG			P-0053739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	38	374	0	ENST00000438362.2:c.576_595dup	p.Glu199AlafsTer13	p.E199Afs*13	ENST00000438362	NM_001242891.1	199	gaa/gCGAAGGGAACGTTCAGCTGGaa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134713	2134713	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1274	124	801	0	ENST00000219476.3:c.4490C>G	p.Pro1497Arg	p.P1497R	ENST00000219476	NM_000548.3	1497	cCc/cGc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976854	18976855	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0053739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1419	95	577	1	ENST00000262803.5:c.3240_3241del	p.Asp1080GlufsTer5	p.D1080Efs*5	ENST00000262803	NM_002911.3	1080	gAC/g																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750769	57750769	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	41	338	0	ENST00000274289.3:c.1835T>A	p.Leu612Gln	p.L612Q	ENST00000274289	NM_006622.3	612	cTa/cAa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592090	67592109	+	frameshift_variant	Frame_Shift_Del	DEL	AACCTGTTGCGAGGGAAGCG	AACCTGTTGCGAGGGAAGCG	-			P-0053739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	31	335	0	ENST00000274335.5:c.1907_1926del	p.Asn636ArgfsTer11	p.N636Rfs*11	ENST00000274335		636	AACCTGTTGCGAGGGAAGCGa/a																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564365	86564365	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	128	637	0	ENST00000274376.6:c.97G>C	p.Val33Leu	p.V33L	ENST00000274376	NM_002890.2	33	Gtg/Ctg																																																																															
MET	4233	MSKCC	GRCh37	7	116339538	116339538	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	73	365	0	ENST00000397752.3:c.400G>C	p.Gly134Arg	p.G134R	ENST00000397752	NM_000245.2	134	Ggc/Cgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900083	151900083	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	17	281	0	ENST00000262189.6:c.4028A>T	p.Lys1343Ile	p.K1343I	ENST00000262189	NM_170606.2	1343	aAa/aTa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591220	67591247	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	GCGTTCTCTTTTCAAAACTGTTTTTCAG	GCGTTCTCTTTTCAAAACTGTTTTTCAG	-			P-0053739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	45	313	0	ENST00000274335.5:c.1746-27_1746del		p.X582_splice	ENST00000274335		582																																																																																
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	88	200	1	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870935	12870945	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGAGCCAGC	GGCGAGCCAGC	-			P-0053554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	52	393	1	ENST00000228872.4:c.163_173del	p.Ala55GlnfsTer66	p.A55Qfs*66	ENST00000228872	NM_004064.3	54	gaGGCGAGCCAGCgc/gagc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40474311	40474311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	73	468	2	ENST00000264657.5:c.2090C>T	p.Ala697Val	p.A697V	ENST00000264657	NM_139276.2	697	gCt/gTt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25468121	25468121	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0053554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	42	996	0	ENST00000264709.3:c.1554+1G>T		p.X518_splice	ENST00000264709	NM_175629.2	518																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0053585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	53	631	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	33	834	0	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106093	8106093	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	116	402	0	ENST00000346208.3:c.913C>T	p.Arg305Ter	p.R305*	ENST00000346208		305	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0053555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	241	385	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554161	63554161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	195	597	0	ENST00000307078.5:c.578C>A	p.Ser193Tyr	p.S193Y	ENST00000307078	NM_004655.3	193	tCt/tAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0053555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	143	420	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748129	41748129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	64	253	1	ENST00000226382.2:c.640G>A	p.Gly214Ser	p.G214S	ENST00000226382	NM_003924.3	214	Ggc/Agc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201786	66201786	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	119	404	0	ENST00000273854.3:c.2716G>T	p.Ala906Ser	p.A906S	ENST00000273854	NM_004439.5	906	Gct/Tct																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0053555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	110	290	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	71	281	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112170762	112170765	+	frameshift_variant	Frame_Shift_Del	DEL	CTTA	CTTA	-			P-0053555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	176	500	0	ENST00000257430.4:c.1863_1866del	p.Tyr622GlyfsTer7	p.Y622Gfs*7	ENST00000257430	NM_000038.5	620	CTTAct/ct																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0053555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	63	265	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140494163	140494163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	202	576	1	ENST00000288602.6:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000288602	NM_004333.4	362	cGa/cAa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	310	763	1	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0053558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	148	351	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0053589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	102	517	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	91	1000	0	ENST00000269305.4:c.470T>G	p.Val157Gly	p.V157G	ENST00000269305	NM_001126112.2	157	gTc/gGc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974715	21974732	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCCCCCGCCTCCA	GCAGCGCCCCCGCCTCCA	-			P-0053589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	38	486	0	ENST00000304494.5:c.95_112delTGGAGGCGGGGGCGCTGC	p.Leu32_Leu37del	p.L32_L37del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCcc/ccc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46543188	46543188	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0053589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	21	544	0	ENST00000262741.5:c.313C>T	p.Arg105Trp	p.R105W	ENST00000262741	NM_003629.3	105	Cgg/Tgg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61727010	61727010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	28	577	0	ENST00000401558.2:c.428C>T	p.Pro143Leu	p.P143L	ENST00000401558	NM_003400.3	143	cCc/cTc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038902	12038902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	105	496	1	ENST00000396373.4:c.1195C>T	p.Arg399Cys	p.R399C	ENST00000396373	NM_001987.4	399	Cgc/Tgc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435068	18435068	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	80	403	0	ENST00000266497.5:c.53A>T	p.Gln18Leu	p.Q18L	ENST00000266497		18	cAg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0053596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	100	599	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MGA	23269	MSKCC	GRCh37	15	42000306	42000306	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	39	557	0	ENST00000219905.7:c.2327del	p.Gly776AspfsTer41	p.G776Dfs*41	ENST00000219905	NM_001164273.1	775	gcG/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578549	7578565	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGAGTACTGTAGGAAGA	GGAGTACTGTAGGAAGA	-			P-0053596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	120	1151	2	ENST00000269305.4:c.376-11_381del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
CIC	23152	MSKCC	GRCh37	19	42791554	42791554	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	77	916	0	ENST00000575354.2:c.535A>C	p.Lys179Gln	p.K179Q	ENST00000575354	NM_015125.3	179	Aag/Cag																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872807	136872807	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	73	649	0	ENST00000241393.3:c.691G>T	p.Gly231Cys	p.G231C	ENST00000241393	NM_003467.2	231	Ggc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884416	151884416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	33	438	0	ENST00000262189.6:c.4939G>A	p.Glu1647Lys	p.E1647K	ENST00000262189	NM_170606.2	1647	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0053598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	30	624	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0053598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	34	674	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108178655	108178656	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1040777064		P-0053598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	20	381	0	ENST00000278616.4:c.5712dup	p.Ser1905IlefsTer25	p.S1905Ifs*25	ENST00000278616	NM_000051.3	1902	-/A																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	25	433	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	28	413	0	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	40	413	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589575	67589576	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	20	115	0	ENST00000274335.5:c.1344dupA	p.Leu449IlefsTer3	p.L449Ifs*3	ENST00000274335		446	-/A																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	37	347	0	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																																																															
CASP8	841	MSKCC	GRCh37	2	202151289	202151290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	29	412	0	ENST00000358485.4:c.1596dupA	p.Leu533ThrfsTer6	p.L533Tfs*6	ENST00000358485	NM_001080125.1	530	aga/agAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	57	795	0	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	44	320	0	ENST00000342505.4:c.1016delA	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170313	32170313	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201260854		P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	57	1074	2	ENST00000375023.3:c.3295G>A	p.Gly1099Arg	p.G1099R	ENST00000375023	NM_004557.3	1099	Gga/Aga																																																																															
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	33	402	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																															
APC	324	MSKCC	GRCh37	5	112175969	112175970	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	20	231	0	ENST00000257430.4:c.4682dupA	p.Asp1562GlyfsTer5	p.D1562Gfs*5	ENST00000257430	NM_000038.5	1560	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112164565	112164566	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	11	249	0	ENST00000257430.4:c.1643dup	p.Leu548PhefsTer12	p.L548Ffs*12	ENST00000257430	NM_000038.5	547	gtt/gTtt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974676	21974676	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	38	650	1	ENST00000304494.5:c.150+1G>T		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71948279	71948280	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	33	1052	0	ENST00000298229.2:c.2996dup	p.Glu1000GlyfsTer43	p.E1000Gfs*43	ENST00000298229	NM_001567.3	997	-/C																																																																															
TET1	80312	MSKCC	GRCh37	10	70442680	70442680	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	44	493	0	ENST00000373644.4:c.5002T>C	p.Cys1668Arg	p.C1668R	ENST00000373644	NM_030625.2	1668	Tgt/Cgt																																																																															
YAP1	10413	MSKCC	GRCh37	11	101985013	101985013	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	62	640	0	ENST00000282441.5:c.460A>G	p.Thr154Ala	p.T154A	ENST00000282441	NM_001130145.2	154	Aca/Gca																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342640	118342640	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	20	281	0	ENST00000534358.1:c.766A>T	p.Ile256Phe	p.I256F	ENST00000534358	NM_005933.3	256	Att/Ttt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3831300	3831300	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	22	330	0	ENST00000262367.5:c.1581T>A	p.Asn527Lys	p.N527K	ENST00000262367	NM_004380.2	527	aaT/aaA																																																																															
CYLD	1540	MSKCC	GRCh37	16	50788312	50788312	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	44	620	0	ENST00000398568.2:c.890T>C	p.Leu297Ser	p.L297S	ENST00000398568	NM_001042412.1	297	tTg/tCg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16001790	16001790	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	28	533	1	ENST00000268712.3:c.2711A>T	p.Lys904Met	p.K904M	ENST00000268712	NM_006311.3	904	aAg/aTg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41226409	41226409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	48	672	0	ENST00000357654.3:c.4614G>T	p.Gln1538His	p.Q1538H	ENST00000357654	NM_007294.3	1538	caG/caT																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226412	2226412	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	46	1175	1	ENST00000398665.3:c.3892G>T	p.Gly1298Cys	p.G1298C	ENST00000398665	NM_032482.2	1298	Ggc/Tgc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10248686	10248686	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	20	558	0	ENST00000340748.4:c.4068-1G>T		p.X1356_splice	ENST00000340748		1356																																																																																
CD79A	973	MSKCC	GRCh37	19	42384996	42384996	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	48	830	1	ENST00000221972.3:c.630C>A	p.Tyr210Ter	p.Y210*	ENST00000221972	NM_021601.3	210	taC/taA																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247376	153247376	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	24	314	0	ENST00000281708.4:c.1426A>G	p.Ser476Gly	p.S476G	ENST00000281708	NM_033632.3	476	Agc/Ggc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31449520	31449520	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	14	296	0	ENST00000344624.3:c.2689A>G	p.Met897Val	p.M897V	ENST00000344624		897	Atg/Gtg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135776996	135776996	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	29	527	0	ENST00000298552.3:c.2482C>G	p.Leu828Val	p.L828V	ENST00000298552	NM_001162426.1	828	Ctc/Gtc																																																																															
FH	2271	MSKCC	GRCh37	1	241663815	241663817	+	missense_variant	Missense_Mutation	ONP	TTC	TTC	ATA			P-0051548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	24	258	1	ENST00000366560.3:c.1310_1312delinsTAT	p.Gly437_Ile438delinsValPhe	p.G437_I438delinsVF	ENST00000366560	NM_000143.3	437	gGAAtc/gTATtc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0052009-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			844	133	501	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052009-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	81	767	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77070044	77070044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052009-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			810	65	544	2	ENST00000356341.3:c.496G>A	p.Glu166Lys	p.E166K	ENST00000356341	NM_002576.4	166	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121909224		P-0053369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	45	419	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0053369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	113	929	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
APC	324	MSKCC	GRCh37	5	112173848	112173848	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	43	307	1	ENST00000257430.4:c.2557G>T	p.Glu853Ter	p.E853*	ENST00000257430	NM_000038.5	853	Gag/Tag																																																																															
AKT1	207	MSKCC	GRCh37	14	105239351	105239351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	100	860	0	ENST00000349310.3:c.1036C>T	p.Arg346Cys	p.R346C	ENST00000349310	NM_001014432.1	346	Cgc/Tgc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38616990	38616990	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	96	417	1	ENST00000299084.4:c.403G>T	p.Glu135Ter	p.E135*	ENST00000299084	NM_152594.2	135	Gaa/Taa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779037	3779037	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	112	825	1	ENST00000262367.5:c.6011G>T	p.Arg2004Leu	p.R2004L	ENST00000262367	NM_004380.2	2004	cGa/cTa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81965200	81965200	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	84	655	0	ENST00000359376.3:c.2680G>T	p.Glu894Ter	p.E894*	ENST00000359376	NM_002661.3	894	Gag/Tag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41251818	41251818	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	98	616	0	ENST00000357654.3:c.521A>C	p.Gln174Pro	p.Q174P	ENST00000357654	NM_007294.3	174	cAa/cCa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530023	212530071	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCCTTGGCCAGCAAGAATGCTTACCCTTGGGTGCAGTTTGGATGGCAT	GCCCTTGGCCAGCAAGAATGCTTACCCTTGGGTGCAGTTTGGATGGCAT	-			P-0053369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	36	207	0	ENST00000342788.4:c.1848_1871+25del		p.X616_splice	ENST00000342788	NM_005235.2	616																																																																																
GSK3B	2932	MSKCC	GRCh37	3	119595278	119595278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	33	282	0	ENST00000316626.5:c.891G>T	p.Lys297Asn	p.K297N	ENST00000316626		297	aaG/aaT																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555015	106555015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	89	507	0	ENST00000369096.4:c.2132C>T	p.Ala711Val	p.A711V	ENST00000369096	NM_001198.3	711	gCt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0053556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	230	430	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488718	212488718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	74	564	0	ENST00000342788.4:c.2131C>T	p.Arg711Cys	p.R711C	ENST00000342788	NM_005235.2	711	Cgt/Tgt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846212	156846212	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	65	694	0	ENST00000524377.1:c.1653G>C	p.Glu551Asp	p.E551D	ENST00000524377	NM_002529.3	551	gaG/gaC																																																																															
CYLD	1540	MSKCC	GRCh37	16	50828330	50828330	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	66	364	0	ENST00000398568.2:c.2668G>T	p.Asp890Tyr	p.D890Y	ENST00000398568	NM_001042412.1	890	Gat/Tat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830448	72830448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	37	276	0	ENST00000268489.5:c.6133C>T	p.Pro2045Ser	p.P2045S	ENST00000268489	NM_006885.3	2045	Cca/Tca																																																																															
FANCA	2175	MSKCC	GRCh37	16	89845246	89845246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	91	547	0	ENST00000389301.3:c.1789C>T	p.Pro597Ser	p.P597S	ENST00000389301	NM_000135.2	597	Cct/Tct																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15295177	15295177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	81	830	0	ENST00000263388.2:c.2495G>A	p.Ser832Asn	p.S832N	ENST00000263388	NM_000435.2	832	aGt/aAt																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200278	138200278	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	52	489	0	ENST00000237289.4:c.1696G>C	p.Asp566His	p.D566H	ENST00000237289	NM_001270507.1	566	Gat/Cat																																																																															
AGO2	27161	MSKCC	GRCh37	8	141545605	141545605	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0053556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	321	877	0	ENST00000220592.5:c.2233G>T	p.Glu745Ter	p.E745*	ENST00000220592	NM_012154.3	745	Gag/Tag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507340	8507341	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0053556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	33	347	0	ENST00000356435.5:c.1637dup	p.Asn546LysfsTer3	p.N546Kfs*3	ENST00000356435		546	aac/aaAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8517972	8517972	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	48	408	0	ENST00000356435.5:c.1419C>G	p.Asp473Glu	p.D473E	ENST00000356435		473	gaC/gaG																																																																															
ATRX	546	MSKCC	GRCh37	X	76778755	76778755	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	110	471	0	ENST00000373344.5:c.6824G>T	p.Trp2275Leu	p.W2275L	ENST00000373344	NM_000489.3	2275	tGg/tTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76937573	76937573	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	71	441	0	ENST00000373344.5:c.3175G>C	p.Glu1059Gln	p.E1059Q	ENST00000373344	NM_000489.3	1059	Gaa/Caa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0053560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	54	328	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581268	48581268	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0053560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	26	426	0	ENST00000342988.3:c.572C>A	p.Ser191Ter	p.S191*	ENST00000342988	NM_005359.5	191	tCg/tAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971176	21971176	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0053560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	46	453	0	ENST00000304494.5:c.182del	p.Glu61GlyfsTer85	p.E61Gfs*85	ENST00000304494	NM_000077.4	61	gAg/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576829	7576859	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATAAGAGGTCCCAAGACTTAGTACCTGAAGG	ATAAGAGGTCCCAAGACTTAGTACCTGAAGG	CTAA			P-0053560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	60	560	2	ENST00000269305.4:c.987_993+24delinsTTAG		p.X329_splice	ENST00000269305	NM_001126112.2	329																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0053627-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			708	600	1034	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163807	32163807	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053627-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			956	489	949	0	ENST00000375023.3:c.5419G>C	p.Ala1807Pro	p.A1807P	ENST00000375023	NM_004557.3	1807	Gct/Cct																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356113	66356113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053627-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	266	546	0	ENST00000273854.3:c.1384G>A	p.Val462Ile	p.V462I	ENST00000273854	NM_004439.5	462	Gta/Ata																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100407	157101301	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCGCCGTCGCAGCCCCAGTCCCAGGCGGCGGCGGCGGGGGCGGCGGCGGGCGGCCAGCAGGCGGCCGCGGGCATGGGCTTGGGCAAGGACATGGGCGCCCAGTACGCCGCTGCCAGCCCGGCCTGGGCGGCCGCGCAACAAAGGAGTCACCCGGCGATGAGCCCCGGCACCCCCGGACCGACCATGGGCAGATCCCAGGTAACCCTCGCGCCAGCCGGGCCTGCTTCCGCCCGGCGGCCTCGCCGCGCCGCGAGCCTGAGTTTCTTTCTTTGCCGCGTACTTTTCCCCGTCTTCCCGCGGGGGCGGCGGGGGCGCGGCGCCCAAAGCCATCTTGACGGGCGGCCGCCTCCCGCCGCGGTCGGGGCGCCCCGGGGGCCGGCGCGCTGTCCAGGCCTGGGAGGGCTTCGCCGGGCCGGGCCGGGCCGGGTGGCTTCTACCCCGCCGGCCCGCACCCGCGTCCCCCCCCTCCCCCAGGCCCGGGAACGCGAAGCGAGATCCCGAGGCGCCACCCGCGCGGTCGCCGTTTGGGGCGGCGGGGACCGTTCGGGTGCTTTTGTAACAAATAGGCTCTCCCGGCCAGGACGGCTGGGGCGAAGAGCCACCCGATCGGTTCTGGGAGCGCCCACAATGTGCTTTAACGGGGGAAAGAATGAGGAACTTTCTCACACCTTTAGCCACAGCACGTTCCCTCTTGGCTTCCGAGGTCCAGGCAGGGAAAATAGGTTAGCTTTGTGACAAGCGAGTGGGTTTTTCCTACTTAGGGAGAGCCATTCAGAGACACTCGGTGCGGGCTTCGAGCTCGAACGTTTGCTGGTAGGAATAATAACAAAATTTACAACGACATGGAGGTGCAATATTGTAAAATACATCGATTCGTTCCTTAGAATAGCCAGG	GCCGCCGTCGCAGCCCCAGTCCCAGGCGGCGGCGGCGGGGGCGGCGGCGGGCGGCCAGCAGGCGGCCGCGGGCATGGGCTTGGGCAAGGACATGGGCGCCCAGTACGCCGCTGCCAGCCCGGCCTGGGCGGCCGCGCAACAAAGGAGTCACCCGGCGATGAGCCCCGGCACCCCCGGACCGACCATGGGCAGATCCCAGGTAACCCTCGCGCCAGCCGGGCCTGCTTCCGCCCGGCGGCCTCGCCGCGCCGCGAGCCTGAGTTTCTTTCTTTGCCGCGTACTTTTCCCCGTCTTCCCGCGGGGGCGGCGGGGGCGCGGCGCCCAAAGCCATCTTGACGGGCGGCCGCCTCCCGCCGCGGTCGGGGCGCCCCGGGGGCCGGCGCGCTGTCCAGGCCTGGGAGGGCTTCGCCGGGCCGGGCCGGGCCGGGTGGCTTCTACCCCGCCGGCCCGCACCCGCGTCCCCCCCCTCCCCCAGGCCCGGGAACGCGAAGCGAGATCCCGAGGCGCCACCCGCGCGGTCGCCGTTTGGGGCGGCGGGGACCGTTCGGGTGCTTTTGTAACAAATAGGCTCTCCCGGCCAGGACGGCTGGGGCGAAGAGCCACCCGATCGGTTCTGGGAGCGCCCACAATGTGCTTTAACGGGGGAAAGAATGAGGAACTTTCTCACACCTTTAGCCACAGCACGTTCCCTCTTGGCTTCCGAGGTCCAGGCAGGGAAAATAGGTTAGCTTTGTGACAAGCGAGTGGGTTTTTCCTACTTAGGGAGAGCCATTCAGAGACACTCGGTGCGGGCTTCGAGCTCGAACGTTTGCTGGTAGGAATAATAACAAAATTTACAACGACATGGAGGTGCAATATTGTAAAATACATCGATTCGTTCCTTAGAATAGCCAGG	-			P-0053627-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			142	102	140	0	ENST00000346085.5:c.1345_1542+697del		p.X449_splice	ENST00000346085	NM_020732.3	449																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8460522	8460546	+	frameshift_variant	Frame_Shift_Del	DEL	AGATCCATTGACACCACGGGGTCGG	AGATCCATTGACACCACGGGGTCGG	-			P-0053627-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			338	257	622	0	ENST00000356435.5:c.3740_3764del	p.Ser1247TrpfsTer13	p.S1247Wfs*13	ENST00000356435		1247	tCCGACCCCGTGGTGTCAATGGATCTg/tg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519972		P-0053644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	143	410	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10246961	10246961	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0053644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	37	533	0	ENST00000340748.4:c.4444G>A	p.Gly1482Ser	p.G1482S	ENST00000340748		1482	Ggc/Agc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061114	38061190	+	protein_altering_variant	In_Frame_Del	DEL	TCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTT	TCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTT	GCGGG			P-0053644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	134	427	2	ENST00000250448.2:c.799_875delinsCCCGC	p.Lys267_Glu292delinsProAla	p.K267_E292delinsPA	ENST00000250448	NM_004496.3	267	AAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGCGGCCCTGAg/CCCGCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0053673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	1371	771	5	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0053673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	264	563	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656921	45656921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	557	857	0	ENST00000407780.3:c.235C>T	p.Arg79Cys	p.R79C	ENST00000407780	NM_001283052.1	79	Cgc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0053681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	187	603	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0053681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	19	409	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579359	7579359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	147	768	3	ENST00000269305.4:c.328C>T	p.Arg110Cys	p.R110C	ENST00000269305	NM_001126112.2	110	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593492	48593492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	32	320	1	ENST00000342988.3:c.1243G>A	p.Asp415Asn	p.D415N	ENST00000342988	NM_005359.5	415	Gac/Aac																																																																															
RAC1	5879	MSKCC	GRCh37	7	6438294	6438294	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0053681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	124	463	0	ENST00000356142.4:c.227T>C	p.Val76Ala	p.V76A	ENST00000356142	NM_018890.3	76	gTt/gCt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249028	55249028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	181	698	0	ENST00000275493.2:c.2326C>A	p.Arg776Ser	p.R776S	ENST00000275493	NM_005228.3	776	Cgc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0053682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	13	502	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
MGA	23269	MSKCC	GRCh37	15	42054402	42054402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	10	448	0	ENST00000219905.7:c.7586G>A	p.Arg2529Lys	p.R2529K	ENST00000219905	NM_001164273.1	2529	aGa/aAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0053682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	35	703	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661393	227661393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	25	703	1	ENST00000305123.5:c.2062G>A	p.Ala688Thr	p.A688T	ENST00000305123	NM_005544.2	688	Gcc/Acc																																																																															
EP300	2033	MSKCC	GRCh37	22	41574638	41574638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	12	901	2	ENST00000263253.7:c.6923G>A	p.Arg2308His	p.R2308H	ENST00000263253	NM_001429.3	2308	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0041265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	116	464	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604778	48604778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767383		P-0041265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	27	474	0	ENST00000342988.3:c.1600C>T	p.Gln534Ter	p.Q534*	ENST00000342988	NM_005359.5	534	Cag/Tag																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032045	26032045	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	122	569	0	ENST00000244661.2:c.244G>C	p.Asp82His	p.D82H	ENST00000244661	NM_003537.3	82	Gat/Cat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591916	48591916	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	31	449	0	ENST00000342988.3:c.1079A>T	p.Asp360Val	p.D360V	ENST00000342988	NM_005359.5	360	gAt/gTt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913783	32913784	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	106	352	0	ENST00000380152.3:c.5297dup	p.Asn1766LysfsTer2	p.N1766Kfs*2	ENST00000380152		1764	tca/tcAa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682338	37682338	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	31	699	0	ENST00000447079.4:c.3529G>T	p.Glu1177Ter	p.E1177*	ENST00000447079	NM_015083.1	1177	Gag/Tag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295669	212295703	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CCTTTCCTCCATCAGCATTGTACTCTTTTTCATCT	CCTTTCCTCCATCAGCATTGTACTCTTTTTCATCT	-			P-0041265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	117	405	0	ENST00000342788.4:c.2610_2643+1del		p.X870_splice	ENST00000342788	NM_005235.2	870																																																																																
TRAF2	7186	MSKCC	GRCh37	9	139794937	139794937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	88	692	0	ENST00000247668.2:c.331G>A	p.Gly111Arg	p.G111R	ENST00000247668	NM_021138.3	111	Gga/Aga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0045484-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			570	101	437	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2115571	2115571	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045484-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			717	74	798	0	ENST00000219476.3:c.1651G>T	p.Ala551Ser	p.A551S	ENST00000219476	NM_000548.3	551	Gcc/Tcc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267360	198267360	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045484-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			595	17	525	0	ENST00000335508.6:c.1997A>C	p.Lys666Thr	p.K666T	ENST00000335508	NM_012433.2	666	aAg/aCg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600336	10600336	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs751088754		P-0045484-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			578	75	770	0	ENST00000171111.5:c.1519C>T	p.Arg507Ter	p.R507*	ENST00000171111	NM_203500.1	507	Cga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1206990	1206990	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045484-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			731	107	837	0	ENST00000326873.7:c.79del	p.His27ThrfsTer24	p.H27Tfs*24	ENST00000326873	NM_000455.4	26	atC/at																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552630	18552630	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045484-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			488	50	546	0	ENST00000266497.5:c.2041C>A	p.Arg681Ser	p.R681S	ENST00000266497		681	Cgc/Agc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820881	3820881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045484-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			853	94	865	1	ENST00000262367.5:c.2570C>T	p.Pro857Leu	p.P857L	ENST00000262367	NM_004380.2	857	cCg/cTg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56377242	56377242	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045484-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			338	33	369	0	ENST00000348428.3:c.863A>T	p.Tyr288Phe	p.Y288F	ENST00000348428	NM_006785.3	288	tAc/tTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097049	11097050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045484-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			643	113	1017	0	ENST00000344626.4:c.541dup	p.Arg181LysfsTer106	p.R181Kfs*106	ENST00000344626	NM_003072.3	180	-/A																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513251	44513251	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045484-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			527	59	614	0	ENST00000291552.4:c.684G>T	p.Arg228Ser	p.R228S	ENST00000291552	NM_006758.2	228	agG/agT																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101910013	101910013	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045484-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			265	31	283	0	ENST00000374994.4:c.1333G>T	p.Val445Phe	p.V445F	ENST00000374994	NM_004612.2	445	Gtt/Ttt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932797	39932797	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045484-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			794	91	865	0	ENST00000378444.4:c.1802C>A	p.Pro601His	p.P601H	ENST00000378444	NM_001123385.1	601	cCc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0050586-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			312	91	478	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259759	16259759	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050586-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			152	253	404	0	ENST00000375759.3:c.7024C>T	p.Arg2342Ter	p.R2342*	ENST00000375759	NM_015001.2	2342	Cga/Tga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061217	38061217	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050586-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			443	129	505	0	ENST00000250448.2:c.772T>C	p.Cys258Arg	p.C258R	ENST00000250448	NM_004496.3	258	Tgc/Cgc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060801	38060801	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050586-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			559	347	840	1	ENST00000250448.2:c.1188del	p.Phe396LeufsTer44	p.F396Lfs*44	ENST00000250448	NM_004496.3	396	ttC/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0053345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	48	650	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0053345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	34	848	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419882	41419883	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0053345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	38	774	1	ENST00000373198.4:c.438_439delinsTT	p.Trp146_Val147delinsCysLeu	p.W146_V147delinsCL	ENST00000373198	NM_133170.3	146	tgGGtg/tgTTtg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8524960	8524960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	29	466	0	ENST00000356435.5:c.644C>A	p.Thr215Asn	p.T215N	ENST00000356435		215	aCt/aAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0053516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	135	882	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0053516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	205	866	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0053516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	82	270	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
CD79B	974	MSKCC	GRCh37	17	62006632	62006632	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	107	873	0	ENST00000392795.3:c.647C>G	p.Thr216Arg	p.T216R	ENST00000392795	NM_001039933.1	216	aCa/aGa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187516881	187516881	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	150	550	0	ENST00000441802.2:c.13100C>G	p.Ser4367Cys	p.S4367C	ENST00000441802	NM_005245.3	4367	tCt/tGt																																																																															
ERG	2078	MSKCC	GRCh37	21	39817489	39817489	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763409220		P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	107	713	1	ENST00000288319.7:c.74C>T	p.Thr25Met	p.T25M	ENST00000288319	NM_182918.3	25	aCg/aTg																																																																															
SDHA	6389	MSKCC	GRCh37	5	233751	233751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	170	719	0	ENST00000264932.6:c.1055G>T	p.Arg352Leu	p.R352L	ENST00000264932	NM_004168.2	352	cGa/cTa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588943	67588943	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	47	258	0	ENST00000274335.5:c.1034A>G	p.Glu345Gly	p.E345G	ENST00000274335		345	gAa/gGa																																																																															
CIC	23152	MSKCC	GRCh37	19	42792100	42792100	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	50	803	1	ENST00000575354.2:c.904G>T	p.Glu302Ter	p.E302*	ENST00000575354	NM_015125.3	302	Gag/Tag																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195364	102195364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	42	481	0	ENST00000263464.3:c.124G>A	p.Gly42Arg	p.G42R	ENST00000263464	NM_001165.4	42	Ggg/Agg																																																																															
MED12	9968	MSKCC	GRCh37	X	70340976	70340976	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	58	399	0	ENST00000374080.3:c.709G>T	p.Glu237Ter	p.E237*	ENST00000374080		237	Gag/Tag																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520192	9520192	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	40	597	0	ENST00000353224.5:c.2077G>T	p.Glu693Ter	p.E693*	ENST00000353224	NM_177990.2	693	Gaa/Taa																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169953064	169953064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	42	577	0	ENST00000295797.4:c.148C>T	p.Leu50Phe	p.L50F	ENST00000295797	NM_002740.5	50	Ctt/Ttt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56491669	56491669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	84	557	0	ENST00000267101.3:c.2561G>T	p.Gly854Val	p.G854V	ENST00000267101	NM_001982.3	854	gGt/gTt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21555725	21555725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	120	889	1	ENST00000382592.4:c.2545C>T	p.Arg849Trp	p.R849W	ENST00000382592	NM_014572.2	849	Cgg/Tgg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729355	41729355	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	44	643	0	ENST00000242208.4:c.1174G>T	p.Val392Leu	p.V392L	ENST00000242208	NM_002192.2	392	Gtg/Ttg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11193204	11193204	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	76	778	0	ENST00000361445.4:c.5297A>C	p.Glu1766Ala	p.E1766A	ENST00000361445	NM_004958.3	1766	gAg/gCg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254785	16254785	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	40	587	0	ENST00000375759.3:c.2050A>G	p.Arg684Gly	p.R684G	ENST00000375759	NM_015001.2	684	Agg/Ggg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28586425	28586425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	83	782	0	ENST00000253063.3:c.67G>T	p.Val23Phe	p.V23F	ENST00000253063	NM_031459.4	23	Gtc/Ttc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36934765	36934765	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	101	824	1	ENST00000361632.4:c.1568A>T	p.Gln523Leu	p.Q523L	ENST00000361632		523	cAa/cTa																																																																															
MPL	4352	MSKCC	GRCh37	1	43805132	43805132	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	101	745	0	ENST00000372470.3:c.582C>A	p.Cys194Ter	p.C194*	ENST00000372470	NM_005373.2	194	tgC/tgA																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521639	46521639	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	35	329	0	ENST00000262741.5:c.769A>T	p.Met257Leu	p.M257L	ENST00000262741	NM_003629.3	257	Atg/Ttg																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117695937	117695937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	48	661	0	ENST00000369458.3:c.500G>T	p.Arg167Leu	p.R167L	ENST00000369458	NM_024626.3	167	cGg/cTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120506254	120506254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	28	492	0	ENST00000256646.2:c.1858G>T	p.Gly620Cys	p.G620C	ENST00000256646	NM_024408.3	620	Ggt/Tgt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844747	156844747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	168	884	1	ENST00000524377.1:c.1301C>A	p.Thr434Lys	p.T434K	ENST00000524377	NM_002529.3	434	aCg/aAg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176055022	176055022	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	30	485	1	ENST00000367669.3:c.1031A>T	p.Lys344Met	p.K344M	ENST00000367669	NM_022457.5	344	aAg/aTg																																																																															
SMYD3	64754	MSKCC	GRCh37	1	245912945	245912945	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	32	421	0	ENST00000388985.4:c.1207A>T	p.Thr403Ser	p.T403S	ENST00000388985		403	Aca/Tca																																																																															
TET1	80312	MSKCC	GRCh37	10	70332742	70332742	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	65	612	0	ENST00000373644.4:c.647G>T	p.Gly216Val	p.G216V	ENST00000373644	NM_030625.2	216	gGg/gTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70406297	70406297	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	85	711	0	ENST00000373644.4:c.3811G>T	p.Glu1271Ter	p.E1271*	ENST00000373644	NM_030625.2	1271	Gaa/Taa																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625313	69625313	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	74	1107	2	ENST00000334134.2:c.480G>T	p.Lys160Asn	p.K160N	ENST00000334134	NM_005247.2	160	aaG/aaT																																																																															
PGR	5241	MSKCC	GRCh37	11	100998255	100998255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	22	354	0	ENST00000325455.5:c.1547G>T	p.Gly516Val	p.G516V	ENST00000325455	NM_001202474.3	516	gGc/gTc																																																																															
ATM	472	MSKCC	GRCh37	11	108164150	108164150	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	42	296	0	ENST00000278616.4:c.4722G>T	p.Leu1574Phe	p.L1574F	ENST00000278616	NM_000051.3	1574	ttG/ttT																																																																															
CBL	867	MSKCC	GRCh37	11	119170274	119170274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	27	330	1	ENST00000264033.4:c.2504G>T	p.Arg835Leu	p.R835L	ENST00000264033	NM_005188.3	835	cGg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421872	49421872	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	136	1008	0	ENST00000301067.7:c.14435C>G	p.Pro4812Arg	p.P4812R	ENST00000301067	NM_003482.3	4812	cCc/cGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426495	49426495	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	144	1050	0	ENST00000301067.7:c.11993G>T	p.Gly3998Val	p.G3998V	ENST00000301067	NM_003482.3	3998	gGc/gTc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861891	57861891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	67	763	0	ENST00000228682.2:c.1192C>A	p.Arg398Ser	p.R398S	ENST00000228682	NM_005269.2	398	Cgt/Agt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865344	57865344	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	324	989	1	ENST00000228682.2:c.2821G>T	p.Ala941Ser	p.A941S	ENST00000228682	NM_005269.2	941	Gct/Tct																																																																															
BRCA2	675	MSKCC	GRCh37	13	32899229	32899229	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	19	321	0	ENST00000380152.3:c.333T>A	p.Asn111Lys	p.N111K	ENST00000380152		111	aaT/aaA																																																																															
DIS3	22894	MSKCC	GRCh37	13	73351584	73351584	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	18	272	0	ENST00000377767.4:c.628C>A	p.Arg210Ser	p.R210S	ENST00000377767	NM_014953.3	210	Cgt/Agt																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675520	40675520	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	52	672	1	ENST00000249776.8:c.301G>T	p.Ala101Ser	p.A101S	ENST00000249776	NM_033286.3	101	Gca/Tca																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678353	88678353	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	128	791	1	ENST00000360948.2:c.1183T>A	p.Phe395Ile	p.F395I	ENST00000360948	NM_001012338.2	395	Ttc/Atc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679246	88679247	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	48	736	0	ENST00000360948.2:c.790_791delinsAT	p.His264Ile	p.H264I	ENST00000360948	NM_001012338.2	264	CAt/ATt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2106216	2106216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	44	854	0	ENST00000219476.3:c.619G>T	p.Val207Phe	p.V207F	ENST00000219476	NM_000548.3	207	Gtc/Ttc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857524	9857524	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	58	540	0	ENST00000330684.3:c.3877G>C	p.Asp1293His	p.D1293H	ENST00000330684	NM_001134407.1	1293	Gat/Cat																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032334	10032334	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	44	539	0	ENST00000330684.3:c.489G>T	p.Gln163His	p.Q163H	ENST00000330684	NM_001134407.1	163	caG/caT																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273854	10273854	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	105	847	0	ENST00000330684.3:c.414+1G>C		p.X138_splice	ENST00000330684	NM_001134407.1	138																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72832447	72832447	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	85	529	0	ENST00000268489.5:c.4134G>C	p.Gln1378His	p.Q1378H	ENST00000268489	NM_006885.3	1378	caG/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	131	1037	1	ENST00000269305.4:c.473del	p.Arg158ProfsTer12	p.R158Pfs*12	ENST00000269305	NM_001126112.2	158	cGc/cc																																																																															
NF1	4763	MSKCC	GRCh37	17	29667664	29667664	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	35	392	0	ENST00000358273.4:c.7062+1G>T		p.X2354_splice	ENST00000358273	NM_001042492.2	2354																																																																																
CDK12	51755	MSKCC	GRCh37	17	37627521	37627521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	48	654	0	ENST00000447079.4:c.1436G>T	p.Gly479Val	p.G479V	ENST00000447079	NM_015083.1	479	gGg/gTg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40354419	40354419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	158	1485	0	ENST00000293328.3:c.2176A>G	p.Met726Val	p.M726V	ENST00000293328	NM_012448.3	726	Atg/Gtg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276767	15276767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	96	944	0	ENST00000263388.2:c.5498C>T	p.Ala1833Val	p.A1833V	ENST00000263388	NM_000435.2	1833	gCa/gTa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942482	17942482	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	60	1063	0	ENST00000458235.1:c.2805+1G>T		p.X935_splice	ENST00000458235	NM_000215.3	935																																																																																
JAK3	3718	MSKCC	GRCh37	19	17948832	17948832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	77	824	0	ENST00000458235.1:c.1610G>T	p.Arg537Leu	p.R537L	ENST00000458235	NM_000215.3	537	cGg/cTg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257874	19257874	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	125	1117	0	ENST00000162023.5:c.512G>C	p.Arg171Pro	p.R171P	ENST00000162023		171	cGa/cCa																																																																															
AKT2	208	MSKCC	GRCh37	19	40740985	40740985	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	89	1042	0	ENST00000392038.2:c.1333G>T	p.Ala445Ser	p.A445S	ENST00000392038	NM_001626.4	445	Gcc/Tcc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99160393	99160393	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	63	664	1	ENST00000074304.5:c.872G>T	p.Arg291Leu	p.R291L	ENST00000074304	NM_001134224.1	291	cGg/cTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248567	212248567	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	43	588	1	ENST00000342788.4:c.3700A>T	p.Lys1234Ter	p.K1234*	ENST00000342788	NM_005235.2	1234	Aag/Tag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662503	227662503	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	87	779	0	ENST00000305123.5:c.952G>T	p.Gly318Cys	p.G318C	ENST00000305123	NM_005544.2	318	Ggc/Tgc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546826	9546826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	42	545	0	ENST00000353224.5:c.1196C>A	p.Ser399Tyr	p.S399Y	ENST00000353224	NM_177990.2	399	tCc/tAc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247417	71247417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	165	773	1	ENST00000318789.4:c.116G>T	p.Gly39Val	p.G39V	ENST00000318789	NM_032682.5	39	gGa/gTa																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200703	128200703	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	70	1036	3	ENST00000341105.2:c.1102C>A	p.Pro368Thr	p.P368T	ENST00000341105	NM_032638.4	368	Cct/Act																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920370	134920370	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	37	620	0	ENST00000398015.3:c.2185G>T	p.Ala729Ser	p.A729S	ENST00000398015	NM_004441.4	729	Gct/Tct																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138461400	138461400	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	26	315	0	ENST00000289153.2:c.621G>T	p.Gln207His	p.Q207H	ENST00000289153	NM_006219.2	207	caG/caT																																																																															
ATR	545	MSKCC	GRCh37	3	142269131	142269131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	26	364	0	ENST00000350721.4:c.2819C>T	p.Ser940Phe	p.S940F	ENST00000350721	NM_001184.3	940	tCc/tTc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55138653	55138653	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	55	567	0	ENST00000257290.5:c.1330G>C	p.Asp444His	p.D444H	ENST00000257290	NM_006206.4	444	Gat/Cat																																																																															
KDR	3791	MSKCC	GRCh37	4	55946130	55946130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	34	446	0	ENST00000263923.4:c.4049C>A	p.Thr1350Lys	p.T1350K	ENST00000263923	NM_002253.2	1350	aCa/aAa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356247	66356247	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs199614818		P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	49	679	0	ENST00000273854.3:c.1250G>T	p.Arg417Leu	p.R417L	ENST00000273854	NM_004439.5	417	cGg/cTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245548	153245548	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	33	293	0	ENST00000281708.4:c.1645-2A>T		p.X549_splice	ENST00000281708	NM_033632.3	549																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153247158	153247158	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	50	321	0	ENST00000281708.4:c.1644G>T	p.Gln548His	p.Q548H	ENST00000281708	NM_033632.3	548	caG/caT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517870	187517870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	41	519	0	ENST00000441802.2:c.12824G>T	p.Gly4275Val	p.G4275V	ENST00000441802	NM_005245.3	4275	gGa/gTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627885	187627885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	58	703	0	ENST00000441802.2:c.3097G>T	p.Val1033Leu	p.V1033L	ENST00000441802	NM_005245.3	1033	Gtg/Ttg																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032255	26032255	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	36	447	0	ENST00000244661.2:c.34A>T	p.Thr12Ser	p.T12S	ENST00000244661	NM_003537.3	12	Acc/Tcc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673583	30673583	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	75	957	0	ENST00000376406.3:c.3377A>T	p.Glu1126Val	p.E1126V	ENST00000376406	NM_014641.2	1126	gAg/gTg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166499	32166499	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	43	750	0	ENST00000375023.3:c.4544A>T	p.Lys1515Met	p.K1515M	ENST00000375023	NM_004557.3	1515	aAg/aTg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188018	32188018	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	74	1002	1	ENST00000375023.3:c.1203C>A	p.Cys401Ter	p.C401*	ENST00000375023	NM_004557.3	401	tgC/tgA																																																																															
SMO	6608	MSKCC	GRCh37	7	128843371	128843371	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	110	858	0	ENST00000249373.3:c.478G>T	p.Glu160Ter	p.E160*	ENST00000249373	NM_005631.4	160	Gag/Tag																																																																															
BRAF	673	MSKCC	GRCh37	7	140508777	140508777	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	58	382	0	ENST00000288602.6:c.523G>T	p.Val175Phe	p.V175F	ENST00000288602	NM_004333.4	175	Gtt/Ttt																																																																															
EZH2	2146	MSKCC	GRCh37	7	148544317	148544317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	48	541	0	ENST00000320356.2:c.74G>T	p.Arg25Leu	p.R25L	ENST00000320356	NM_004456.4	25	cGa/cTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152008883	152008883	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	35	364	0	ENST00000262189.6:c.739G>T	p.Gly247Cys	p.G247C	ENST00000262189	NM_170606.2	247	Ggc/Tgc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372417	55372417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	65	1099	3	ENST00000297316.4:c.1107C>A	p.Phe369Leu	p.F369L	ENST00000297316	NM_022454.3	369	ttC/ttA																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485849	8485849	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	30	496	0	ENST00000356435.5:c.2968T>A	p.Tyr990Asn	p.Y990N	ENST00000356435		990	Tac/Aac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486113	8486113	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	70	631	0	ENST00000356435.5:c.2704G>C	p.Gly902Arg	p.G902R	ENST00000356435		902	Ggc/Cgc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486344	8486344	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	24	334	0	ENST00000356435.5:c.2473G>T	p.Gly825Trp	p.G825W	ENST00000356435		825	Ggg/Tgg																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321342	1321342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	53	731	0	ENST00000381566.1:c.413G>A	p.Cys138Tyr	p.C138Y	ENST00000381566		138	tGt/tAt																																																																															
B2M	567	MSKCC	GRCh37	15	45007808	45007808	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	TT			P-0053517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	44	487	0	ENST00000558401.1:c.255delinsTT	p.Leu85PhefsTer5	p.L85Ffs*5	ENST00000558401	NM_004048.2	85	ttG/ttTT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577577	+	protein_altering_variant	In_Frame_Del	DEL	TACACATGTAGT	TACACATGTAGT	ATG			P-0053519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	171	703	3	ENST00000269305.4:c.704_715delinsCAT	p.Asn235_Asn239delinsThrTyr	p.N235_N239delinsTY	ENST00000269305	NM_001126112.2	235	aACTACATGTGTAac/aCATac																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0053520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	156	468	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs770248150		P-0053520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	111	536	0	ENST00000256078.4:c.351A>C	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaC																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40364153	40364153	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200200711		P-0053520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	86	471	0	ENST00000293328.3:c.1529C>T	p.Ala510Val	p.A510V	ENST00000293328	NM_012448.3	510	gCg/gTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624263	89624263	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	247	406	0	ENST00000371953.3:c.37A>G	p.Lys13Glu	p.K13E	ENST00000371953	NM_000314.4	13	Aaa/Gaa																																																																															
KIT	3815	MSKCC	GRCh37	4	55564710	55564710	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	103	619	0	ENST00000288135.5:c.598T>C	p.Phe200Leu	p.F200L	ENST00000288135	NM_000222.2	200	Ttc/Ctc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0053522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	313	721	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244785	46244785	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0053522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	221	564	0	ENST00000334344.6:c.2880del	p.Gln961SerfsTer2	p.Q961Sfs*2	ENST00000334344	NM_152641.2	960	gTt/gt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0053524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	163	470	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041195	29041195	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	170	672	0	ENST00000282397.4:c.233A>C	p.Lys78Thr	p.K78T	ENST00000282397	NM_002019.4	78	aAa/aCa																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023169	33023169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	163	719	0	ENST00000300177.4:c.278G>T	p.Trp93Leu	p.W93L	ENST00000300177	NM_001191322.1	93	tGg/tTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0053524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	16	356	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55140734	55140734	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	205	628	0	ENST00000257290.5:c.1595T>A	p.Leu532Gln	p.L532Q	ENST00000257290	NM_006206.4	532	cTg/cAg																																																																															
KIT	3815	MSKCC	GRCh37	4	55564615	55564615	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	182	718	0	ENST00000288135.5:c.503C>G	p.Ala168Gly	p.A168G	ENST00000288135	NM_000222.2	168	gCg/gGg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520208	176520208	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	215	1012	0	ENST00000292408.4:c.1127G>T	p.Gly376Val	p.G376V	ENST00000292408	NM_213647.1	376	gGc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0053527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	11	386	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	43	644	0	ENST00000269305.4:c.581T>A	p.Leu194His	p.L194H	ENST00000269305	NM_001126112.2	194	cTt/cAt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67569289	67569289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	26	360	0	ENST00000274335.5:c.406G>A	p.Val136Met	p.V136M	ENST00000274335		136	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0053530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	278	817	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972628	32972630	+	missense_variant	Missense_Mutation	ONP	AAA	AAA	TAT			P-0053530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	56	455	1	ENST00000380152.3:c.9978_9980delinsTAT	p.Lys3326_Lys3327delinsAsnIle	p.K3326_K3327delinsNI	ENST00000380152		3326	aaAAAa/aaTATa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520009		P-0053533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	69	446	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0053533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	251	450	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098949	47098949	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	132	543	1	ENST00000409792.3:c.6325C>T	p.Arg2109Ter	p.R2109*	ENST00000409792	NM_014159.6	2109	Cga/Tga																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439889	51439889	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	102	436	1	ENST00000262662.1:c.454G>T	p.Val152Phe	p.V152F	ENST00000262662		152	Gtt/Ttt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599868	10599868	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0053533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	481	928	1	ENST00000171111.5:c.1708G>C	p.Gly570Arg	p.G570R	ENST00000171111	NM_203500.1	570	Gga/Cga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0053542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	139	367	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313211	30313211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	99	593	0	ENST00000262643.3:c.905C>T	p.Ser302Leu	p.S302L	ENST00000262643	NM_001238.2	302	tCg/tTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266064	41266656	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	GCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGT	GCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGT	-			P-0053542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	105	309	0	ENST00000349496.5:c.63_455del		p.X21_splice	ENST00000349496	NM_001904.3	21	GCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGT/-																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952063	178952063	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	77	421	0	ENST00000263967.3:c.3118A>T	p.Met1040Leu	p.M1040L	ENST00000263967	NM_006218.2	1040	Atg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0053543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	72	516	1	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602799	10602799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1419	55	862	0	ENST00000171111.5:c.779G>T	p.Arg260Leu	p.R260L	ENST00000171111	NM_203500.1	260	cGa/cTa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120461038	120461038	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	73	392	0	ENST00000256646.2:c.5920G>T	p.Asp1974Tyr	p.D1974Y	ENST00000256646	NM_024408.3	1974	Gat/Tat																																																																															
PAK1	5058	MSKCC	GRCh37	11	77090424	77090424	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	51	317	0	ENST00000356341.3:c.301G>C	p.Glu101Gln	p.E101Q	ENST00000356341	NM_002576.4	101	Gag/Cag																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856234	111856237	+	frameshift_variant	Frame_Shift_Del	DEL	GCCC	GCCC	ACA			P-0053543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	21	161	1	ENST00000341259.2:c.285_288delinsACA	p.Pro96HisfsTer101	p.P96Hfs*101	ENST00000341259	NM_005475.2	95	ggGCCC/ggACA																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533618	63533618	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1247	91	757	0	ENST00000307078.5:c.1536G>C	p.Lys512Asn	p.K512N	ENST00000307078	NM_004655.3	512	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0053547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	242	791	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48955394	48955394	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	59	219	0	ENST00000267163.4:c.1510C>T	p.Gln504Ter	p.Q504*	ENST00000267163	NM_000321.2	504	Cag/Tag																																																																															
ATR	545	MSKCC	GRCh37	3	142212090	142212090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	87	529	0	ENST00000350721.4:c.5962G>C	p.Glu1988Gln	p.E1988Q	ENST00000350721	NM_001184.3	1988	Gaa/Caa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	40	342	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	31	179	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
CIC	23152	MSKCC	GRCh37	19	42799299	42799300	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	40	425	1	ENST00000575354.2:c.4790dupC	p.Pro1598ThrfsTer16	p.P1598Tfs*16	ENST00000575354	NM_015125.3	1595	tcc/tCcc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	212	908	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	40	413	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	40	221	0	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298740	15298740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	92	981	4	ENST00000263388.2:c.1558G>A	p.Ala520Thr	p.A520T	ENST00000263388	NM_000435.2	520	Gcc/Acc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10260241	10260241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	116	724	1	ENST00000340748.4:c.2426C>T	p.Ser809Leu	p.S809L	ENST00000340748		809	tCg/tTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241722	55241722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	89	596	0	ENST00000275493.2:c.2170G>A	p.Gly724Ser	p.G724S	ENST00000275493	NM_005228.3	724	Ggc/Agc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857524	9857524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	38	436	0	ENST00000330684.3:c.3877G>A	p.Asp1293Asn	p.D1293N	ENST00000330684	NM_001134407.1	1293	Gat/Aat																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807829	1807829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	125	1146	1	ENST00000260795.2:c.1888G>A	p.Val630Met	p.V630M	ENST00000260795		630	Gtg/Atg																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882050	36882050	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	102	965	3	ENST00000358127.4:c.963del	p.Ala322LeufsTer11	p.A322Lfs*11	ENST00000358127	NM_001280556.1	321	ccC/cc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933744	49933744	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	98	844	2	ENST00000296474.3:c.2533C>T	p.Arg845Ter	p.R845*	ENST00000296474	NM_002447.2	845	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	61	442	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411530	63411530	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	110	442	1	ENST00000330258.3:c.1637del	p.Leu546CysfsTer16	p.L546Cfs*16	ENST00000330258	NM_152424.3	546	tTg/tg																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	75	405	1	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919935	50919935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	118	1096	1	ENST00000440232.2:c.3022C>T	p.Arg1008Cys	p.R1008C	ENST00000440232	NM_002691.3	1008	Cgc/Tgc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920452	114920452	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	84	370	0	ENST00000543371.1:c.1391+2T>C		p.X464_splice	ENST00000543371	NM_001198531.1	464																																																																																
BRD4	23476	MSKCC	GRCh37	19	15383793	15383793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	112	804	1	ENST00000263377.2:c.118G>A	p.Ala40Thr	p.A40T	ENST00000263377	NM_058243.2	40	Gca/Aca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5240271	5240271	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	112	983	1	ENST00000357368.4:c.1643del	p.Pro548ArgfsTer37	p.P548Rfs*37	ENST00000357368	NM_002850.3	548	cCg/cg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618930	37618930	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	84	542	1	ENST00000447079.4:c.610del	p.Arg204GlyfsTer134	p.R204Gfs*134	ENST00000447079	NM_015083.1	202	cgA/cg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922363	178922363	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	49	263	0	ENST00000263967.3:c.1132T>C	p.Cys378Arg	p.C378R	ENST00000263967	NM_006218.2	378	Tgt/Cgt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107749	30107749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	61	396	0	ENST00000331968.5:c.931C>T	p.Arg311Cys	p.R311C	ENST00000331968	NM_002742.2	311	Cgt/Tgt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372092	55372092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	63	627	0	ENST00000297316.4:c.782G>C	p.Gly261Ala	p.G261A	ENST00000297316	NM_022454.3	261	gGc/gCc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	85	826	1	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																															
INHA	3623	MSKCC	GRCh37	2	220437223	220437223	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	106	1166	3	ENST00000243786.2:c.132del	p.Ala45ArgfsTer2	p.A45Rfs*2	ENST00000243786	NM_002191.3	43	Ccc/cc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562181	21562181	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	169	1047	1	ENST00000382592.4:c.1738G>T	p.Val580Phe	p.V580F	ENST00000382592	NM_014572.2	580	Gtc/Ttc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456447	32456447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	89	672	0	ENST00000332351.3:c.445G>A	p.Ala149Thr	p.A149T	ENST00000332351	NM_024426.4	149	Gcg/Acg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45651316	45651316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	90	595	0	ENST00000407780.3:c.709G>A	p.Gly237Arg	p.G237R	ENST00000407780	NM_001283052.1	237	Gga/Aga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2951811	2951811	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146334064		P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	88	662	0	ENST00000396946.4:c.3139G>A	p.Ala1047Thr	p.A1047T	ENST00000396946	NM_032415.4	1047	Gcc/Acc																																																																															
RAC2	5880	MSKCC	GRCh37	22	37627983	37627983	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375471633		P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	119	903	1	ENST00000249071.6:c.277G>A	p.Val93Ile	p.V93I	ENST00000249071	NM_002872.4	93	Gtc/Atc																																																																															
MET	4233	MSKCC	GRCh37	7	116422111	116422111	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	57	331	0	ENST00000397752.3:c.3596del	p.Lys1199SerfsTer49	p.K1199Sfs*49	ENST00000397752	NM_000245.2	1198	Aaa/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685314	89685314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	28	86	0	ENST00000371953.3:c.209T>A	p.Leu70His	p.L70H	ENST00000371953	NM_000314.4	70	cTt/cAt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520552	176520552	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	117	968	1	ENST00000292408.4:c.1397G>T	p.Arg466Met	p.R466M	ENST00000292408	NM_213647.1	466	aGg/aTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187203	11187203	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	52	528	0	ENST00000361445.4:c.6217-2A>G		p.X2073_splice	ENST00000361445	NM_004958.3	2073																																																																																
SDHB	6390	MSKCC	GRCh37	1	17371343	17371344	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	68	472	0	ENST00000375499.3:c.112dup	p.Arg38ProfsTer25	p.R38Pfs*25	ENST00000375499	NM_003000.2	38	cgt/cCgt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256520	115256520	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	101	491	0	ENST00000369535.4:c.191A>G	p.Tyr64Cys	p.Y64C	ENST00000369535	NM_002524.4	64	tAc/tGc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115262200	115262200	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	63	310	1	ENST00000438362.2:c.2354G>A	p.Cys785Tyr	p.C785Y	ENST00000438362	NM_001242891.1	785	tGt/tAt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851540	63851540	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	82	598	0	ENST00000279873.7:c.2318T>C	p.Phe773Ser	p.F773S	ENST00000279873	NM_032199.2	773	tTt/tCt																																																																															
EED	8726	MSKCC	GRCh37	11	85977260	85977260	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	29	79	0	ENST00000263360.6:c.860+2T>C		p.X287_splice	ENST00000263360	NM_003797.3	287																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118343330	118343330	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	57	350	0	ENST00000534358.1:c.1456A>G	p.Thr486Ala	p.T486A	ENST00000534358	NM_005933.3	486	Acc/Gcc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18466910	18466910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	41	288	0	ENST00000266497.5:c.1049G>A	p.Gly350Glu	p.G350E	ENST00000266497		350	gGg/gAg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18800870	18800870	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	19	320	0	ENST00000266497.5:c.4249del	p.Thr1417LeufsTer24	p.T1417Lfs*24	ENST00000266497		1416	Aaa/aa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123712	46123712	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	43	304	1	ENST00000334344.6:c.92+1G>A		p.X31_splice	ENST00000334344	NM_152641.2	31																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49434607	49434607	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	41	1084	0	ENST00000301067.7:c.6946C>A	p.Leu2316Met	p.L2316M	ENST00000301067	NM_003482.3	2316	Ctg/Atg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110066	115110066	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	77	902	1	ENST00000257566.3:c.1812del	p.Tyr605ThrfsTer27	p.Y605Tfs*27	ENST00000257566	NM_016569.3	604	ccC/cc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28592612	28592612	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	75	362	0	ENST00000241453.7:c.2533A>G	p.Arg845Gly	p.R845G	ENST00000241453	NM_004119.2	845	Agg/Ggg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89383424	89383424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	110	732	0	ENST00000301030.4:c.4C>T	p.Pro2Ser	p.P2S	ENST00000301030	NM_001256183.1	2	Ccc/Tcc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89865616	89865616	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	90	583	1	ENST00000389301.3:c.851G>T	p.Gly284Val	p.G284V	ENST00000389301	NM_000135.2	284	gGa/gTa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37667816	37667816	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	71	397	0	ENST00000447079.4:c.2701T>C	p.Tyr901His	p.Y901H	ENST00000447079	NM_015083.1	901	Tac/Cac																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226439	2226439	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	155	1129	0	ENST00000398665.3:c.3919A>G	p.Ser1307Gly	p.S1307G	ENST00000398665	NM_032482.2	1307	Agc/Ggc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144458	11144458	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	116	848	1	ENST00000344626.4:c.3790A>G	p.Thr1264Ala	p.T1264A	ENST00000344626	NM_003072.3	1264	Acg/Gcg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285142	15285142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	129	1038	0	ENST00000263388.2:c.4473G>T	p.Glu1491Asp	p.E1491D	ENST00000263388	NM_000435.2	1491	gaG/gaT																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311618	15311619	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGC			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	33	213	0	ENST00000263388.2:c.96_98dup	p.Leu33dup	p.L33dup	ENST00000263388	NM_000435.2	33	cta/ctGCTa																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273102	18273102	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	103	944	0	ENST00000222254.8:c.992A>G	p.Tyr331Cys	p.Y331C	ENST00000222254	NM_005027.3	331	tAc/tGc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18974423	18974423	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	47	490	0	ENST00000262803.5:c.2775+2T>G		p.X925_splice	ENST00000262803	NM_002911.3	925																																																																																
CIC	23152	MSKCC	GRCh37	19	42797310	42797310	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	93	1046	0	ENST00000575354.2:c.3675del	p.Gln1226SerfsTer76	p.Q1226Sfs*76	ENST00000575354	NM_015125.3	1224	gaG/ga																																																																															
REL	5966	MSKCC	GRCh37	2	61145343	61145343	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	35	189	0	ENST00000295025.8:c.553G>T	p.Glu185Ter	p.E185*	ENST00000295025	NM_002908.2	185	Gaa/Taa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52668648	52668648	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	54	363	0	ENST00000394830.3:c.1271T>A	p.Ile424Asn	p.I424N	ENST00000394830	NM_018313.4	424	aTt/aAt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178490	56178490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	31	240	0	ENST00000399503.3:c.3463G>A	p.Val1155Ile	p.V1155I	ENST00000399503	NM_005921.1	1155	Gtc/Atc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750776	57750776	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	59	414	0	ENST00000274289.3:c.1828A>G	p.Lys610Glu	p.K610E	ENST00000274289	NM_006622.3	610	Aag/Gag																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858180	27858180	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	70	608	0	ENST00000359303.2:c.391A>G	p.Ile131Val	p.I131V	ENST00000359303	NM_003535.2	131	Atc/Gtc																																																																															
PIM1	5292	MSKCC	GRCh37	6	37139048	37139048	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	91	794	0	ENST00000373509.5:c.388T>C	p.Phe130Leu	p.F130L	ENST00000373509	NM_002648.3	130	Ttc/Ctc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609872	117609872	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	77	527	0	ENST00000368508.3:c.6827T>C	p.Val2276Ala	p.V2276A	ENST00000368508	NM_002944.2	2276	gTa/gCa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879058	151879059	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	87	538	0	ENST00000262189.6:c.5886dup	p.Tyr1963LeufsTer9	p.Y1963Lfs*9	ENST00000262189	NM_170606.2	1962	-/C																																																																															
SYK	6850	MSKCC	GRCh37	9	93641128	93641128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	91	564	0	ENST00000375746.1:c.1474C>T	p.His492Tyr	p.H492Y	ENST00000375746	NM_001174167.1	492	Cac/Tac																																																																															
MED12	9968	MSKCC	GRCh37	X	70338606	70338606	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0053566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	85	337	0	ENST00000374080.3:c.2T>C	p.Met1?	p.M1?	ENST00000374080		1	aTg/aCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0053480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	80	354	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602413	10602413	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	114	865	1	ENST00000171111.5:c.1165G>T	p.Asp389Tyr	p.D389Y	ENST00000171111	NM_203500.1	389	Gac/Tac																																																																															
JAK1	3716	MSKCC	GRCh37	1	65303689	65303689	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	115	465	1	ENST00000342505.4:c.3066del	p.Phe1022LeufsTer3	p.F1022Lfs*3	ENST00000342505	NM_002227.2	1022	ttC/tt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151843797	151843797	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	74	348	0	ENST00000262189.6:c.13918C>A	p.Pro4640Thr	p.P4640T	ENST00000262189	NM_170606.2	4640	Cct/Act																																																																															
STK11	6794	MSKCC	GRCh37	19	1220416	1220417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0053480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	90	736	0	ENST00000326873.7:c.509_510insC	p.Gln170HisfsTer96	p.Q170Hfs*96	ENST00000326873	NM_000455.4	170	cag/caCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0053482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	128	323	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0053482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	373	473	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450244	50450244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	87	416	0	ENST00000331340.3:c.428G>A	p.Arg143Gln	p.R143Q	ENST00000331340	NM_006060.4	143	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575231	48575231	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0053482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	86	187	0	ENST00000342988.3:c.424+1G>T		p.X142_splice	ENST00000342988	NM_005359.5	142																																																																																
RBM10	8241	MSKCC	GRCh37	X	47039297	47039297	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	203	368	0	ENST00000329236.7:c.689T>G	p.Leu230Arg	p.L230R	ENST00000329236	NM_001204466.1	230	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578246	7578247	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0053482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	215	624	0	ENST00000269305.4:c.602dupT	p.Leu201PhefsTer8	p.L201Ffs*8	ENST00000269305	NM_001126112.2	201	ttg/ttTg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922719	44922720	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0053482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	139	182	0	ENST00000377967.4:c.1580_1581del	p.Pro527HisfsTer3	p.P527Hfs*3	ENST00000377967	NM_021140.2	527	cCA/c																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	160	291	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	175	328	0	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14024721	14024721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	60	326	0	ENST00000311895.7:c.947C>T	p.Thr316Met	p.T316M	ENST00000311895	NM_005236.2	316	aCg/aTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	411	637	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738411	145738416	+	inframe_deletion	In_Frame_Del	DEL	GGTGCA	GGTGCA	-			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	150	728	0	ENST00000428558.2:c.2569_2574delTGCACC	p.Cys857_Thr858del	p.C857_T858del	ENST00000428558	NM_004260.3	857	TGCACC/-																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	34	113	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	70	236	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	60	412	1	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692849	89692849	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	62	154	0	ENST00000371953.3:c.333G>A	p.Trp111Ter	p.W111*	ENST00000371953	NM_000314.4	111	tgG/tgA																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	226	419	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522033	157522033	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	69	497	0	ENST00000346085.5:c.4308del	p.Gln1437ArgfsTer11	p.Q1437Rfs*11	ENST00000346085	NM_020732.3	1435	ccG/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	207	482	1	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																															
AXL	558	MSKCC	GRCh37	19	41743930	41743930	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141302305		P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	195	678	0	ENST00000301178.4:c.865G>A	p.Val289Met	p.V289M	ENST00000301178	NM_021913.4	289	Gtg/Atg																																																																															
AR	367	MSKCC	GRCh37	X	66905930	66905930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	95	328	0	ENST00000374690.3:c.1847G>A	p.Arg616His	p.R616H	ENST00000374690	NM_000044.3	616	cGt/cAt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432041	121432041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	234	721	0	ENST00000257555.6:c.788G>A	p.Arg263His	p.R263H	ENST00000257555		263	cGt/cAt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	127	280	3	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	149	343	0	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651438	52651438	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	111	438	0	ENST00000394830.3:c.1658delA	p.Lys553ArgfsTer16	p.K553Rfs*16	ENST00000394830	NM_018313.4	553	aAg/ag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98220390	98220390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	185	445	0	ENST00000331920.6:c.3073C>T	p.Arg1025Cys	p.R1025C	ENST00000331920	NM_000264.3	1025	Cgc/Tgc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	145	360	4	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513282	44513287	+	inframe_deletion	In_Frame_Del	DEL	CCACCG	CCACCG	-			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	104	436	4	ENST00000291552.4:c.648_653delCGGTGG	p.Gly222_Gly223del	p.G222_G223del	ENST00000291552	NM_006758.2	216	ggCGGTGGt/ggt																																																																															
INSR	3643	MSKCC	GRCh37	19	7142913	7142913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	226	573	2	ENST00000302850.5:c.2456G>A	p.Arg819His	p.R819H	ENST00000302850	NM_000208.2	819	cGc/cAc																																																																															
B2M	567	MSKCC	GRCh37	15	45007689	45007690	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	41	335	0	ENST00000558401.1:c.137_138del	p.Tyr46CysfsTer10	p.Y46Cfs*10	ENST00000558401	NM_004048.2	46	TAt/t																																																																															
CIC	23152	MSKCC	GRCh37	19	42799131	42799131	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	194	680	0	ENST00000575354.2:c.4620delC	p.Thr1541LeufsTer79	p.T1541Lfs*79	ENST00000575354	NM_015125.3	1539	Ccc/cc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249361	153249361	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	89	291	1	ENST00000281708.4:c.1417delA	p.Arg473GlufsTer25	p.R473Efs*25	ENST00000281708	NM_033632.3	473	Aga/ga																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935322	36935323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	155	710	3	ENST00000361632.4:c.1404dupC	p.Ser469GlnfsTer5	p.S469Qfs*5	ENST00000361632		468	-/C																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403254	213403254	+	frameshift_variant,start_lost	Frame_Shift_Del	DEL	T	T	-			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	178	363	0	ENST00000342788.4:c.1delA	p.Met1?	p.M1?	ENST00000342788	NM_005235.2	1	Atg/tg																																																																															
ATM	472	MSKCC	GRCh37	11	108115753	108115753	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	32	147	0	ENST00000278616.4:c.901G>T	p.Gly301Cys	p.G301C	ENST00000278616	NM_000051.3	301	Ggt/Tgt																																																																															
SMO	6608	MSKCC	GRCh37	7	128829075	128829075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1247591045		P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	25	29	0	ENST00000249373.3:c.88del	p.Ala30ArgfsTer25	p.A30Rfs*25	ENST00000249373	NM_005631.4	28	cGg/cg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	141	413	2	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741838	17741838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	47	192	0	ENST00000250003.3:c.509C>T	p.Ala170Val	p.A170V	ENST00000250003	NM_002478.4	170	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445500	49445500	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	222	466	2	ENST00000301067.7:c.1966delC	p.Leu656CysfsTer274	p.L656Cfs*274	ENST00000301067	NM_003482.3	656	Ctg/tg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	154	461	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445173	49445173	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	83	700	0	ENST00000301067.7:c.2293G>C	p.Ala765Pro	p.A765P	ENST00000301067	NM_003482.3	765	Gct/Cct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101068	27101068	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	72	594	1	ENST00000324856.7:c.4354delC	p.Gln1452ArgfsTer29	p.Q1452Rfs*29	ENST00000324856	NM_006015.4	1450	ggC/gg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323362	31323363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	237	343	0	ENST00000412585.2:c.626dupC	p.Thr211AspfsTer10	p.T211Dfs*10	ENST00000412585	NM_005514.6	209	cca/ccCa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218451	36218451	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	152	598	0	ENST00000222270.7:c.4235del	p.Gly1412AlafsTer10	p.G1412Afs*10	ENST00000222270	NM_014727.1	1410	caG/ca																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17387698	17387698	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199960321		P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	170	458	0	ENST00000359435.4:c.766G>A	p.Glu256Lys	p.E256K	ENST00000359435	NM_001033549.1	256	Gag/Aag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118890	70118890	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	217	566	0	ENST00000245479.2:c.462C>G	p.Phe154Leu	p.F154L	ENST00000245479	NM_000346.3	154	ttC/ttG																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820938	3820938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	86	526	0	ENST00000262367.5:c.2513C>A	p.Pro838His	p.P838H	ENST00000262367	NM_004380.2	838	cCt/cAt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205092	38205092	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	136	475	1	ENST00000317025.8:c.598del	p.Ser200AlafsTer20	p.S200Afs*20	ENST00000317025	NM_023034.1	200	Agc/gc																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379841	17379841	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	235	729	0	ENST00000359435.4:c.230del	p.Pro77ArgfsTer19	p.P77Rfs*19	ENST00000359435	NM_001033549.1	76	Ccc/cc																																																																															
SRC	6714	MSKCC	GRCh37	20	36012710	36012710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	46	73	0	ENST00000358208.4:c.154G>A	p.Ala52Thr	p.A52T	ENST00000358208		52	Gcg/Acg																																																																															
RET	5979	MSKCC	GRCh37	10	43597990	43597990	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	216	674	0	ENST00000355710.3:c.538C>T	p.Arg180Ter	p.R180*	ENST00000355710	NM_020975.4	180	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224316	36224316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	220	619	0	ENST00000222270.7:c.6866C>T	p.Pro2289Leu	p.P2289L	ENST00000222270	NM_014727.1	2289	cCg/cTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89825093	89825093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	42	411	1	ENST00000389301.3:c.2873C>T	p.Ala958Val	p.A958V	ENST00000389301	NM_000135.2	958	gCg/gTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68842662	68842662	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	123	567	0	ENST00000261769.5:c.602delC	p.Pro201LeufsTer14	p.P201Lfs*14	ENST00000261769	NM_004360.3	200	Ccc/cc																																																																															
BCL2	596	MSKCC	GRCh37	18	60985768	60985768	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	142	242	1	ENST00000333681.4:c.132del	p.Ala45HisfsTer51	p.A45Hfs*51	ENST00000333681		44	ccC/cc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445094	89445094	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	52	319	0	ENST00000336596.2:c.1414G>T	p.Val472Phe	p.V472F	ENST00000336596	NM_005233.5	472	Gtc/Ttc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65351940	65351940	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	89	307	0	ENST00000342505.4:c.6+2T>C		p.X2_splice	ENST00000342505	NM_002227.2	2																																																																																
CSDE1	7812	MSKCC	GRCh37	1	115275305	115275305	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	171	529	0	ENST00000438362.2:c.1108C>T	p.Arg370Ter	p.R370*	ENST00000438362	NM_001242891.1	370	Cga/Tga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120471755	120471756	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	150	420	0	ENST00000256646.2:c.3735dup	p.Gly1246TrpfsTer17	p.G1246Wfs*17	ENST00000256646	NM_024408.3	1245	-/T																																																																															
RET	5979	MSKCC	GRCh37	10	43608321	43608321	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	219	710	0	ENST00000355710.3:c.1669A>G	p.Thr557Ala	p.T557A	ENST00000355710	NM_020975.4	557	Acc/Gcc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332889	70332889	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	66	466	1	ENST00000373644.4:c.794A>T	p.Asn265Ile	p.N265I	ENST00000373644	NM_030625.2	265	aAc/aTc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138867	64138867	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	153	511	0	ENST00000334205.4:c.2237del	p.Pro746LeufsTer38	p.P746Lfs*38	ENST00000334205	NM_003942.2	745	tCc/tc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589782	69589782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	37	42	1	ENST00000168712.1:c.71C>T	p.Ala24Val	p.A24V	ENST00000168712	NM_002007.2	24	gCg/gTg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240154	41240154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	16	76	2	ENST00000379561.5:c.196G>A	p.Val66Ile	p.V66I	ENST00000379561	NM_002015.3	66	Gtc/Atc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281659	49281659	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	251	537	0	ENST00000282018.3:c.706T>C	p.Ser236Pro	p.S236P	ENST00000282018	NM_020377.2	236	Tcg/Ccg																																																																															
B2M	567	MSKCC	GRCh37	15	45007803	45007803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	38	318	0	ENST00000558401.1:c.250C>A	p.Leu84Ile	p.L84I	ENST00000558401	NM_004048.2	84	Ctc/Atc																																																																															
CDH1	999	MSKCC	GRCh37	16	68856104	68856104	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	107	394	0	ENST00000261769.5:c.1912T>C	p.Trp638Arg	p.W638R	ENST00000261769	NM_004360.3	638	Tgg/Cgg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347881	89347881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	94	528	0	ENST00000301030.4:c.5069C>A	p.Pro1690His	p.P1690H	ENST00000301030	NM_001256183.1	1690	cCt/cAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29585499	29585499	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	22	171	0	ENST00000358273.4:c.4311G>T	p.Arg1437Ser	p.R1437S	ENST00000358273	NM_001042492.2	1437	agG/agT																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619419	1619419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	159	518	0	ENST00000344749.5:c.1222G>A	p.Ala408Thr	p.A408T	ENST00000344749	NM_001136139.2	408	Gcc/Acc																																																																															
ALK	238	MSKCC	GRCh37	2	29416400	29416400	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	87	486	0	ENST00000389048.3:c.4553del	p.Lys1518ArgfsTer5	p.K1518Rfs*5	ENST00000389048	NM_004304.4	1518	aAg/ag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743935	40743935	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	192	379	0	ENST00000373198.4:c.3060G>T	p.Trp1020Cys	p.W1020C	ENST00000373198	NM_133170.3	1020	tgG/tgT																																																																															
AURKA	6790	MSKCC	GRCh37	20	54958123	54958123	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	164	356	1	ENST00000312783.6:c.484A>G	p.Lys162Glu	p.K162E	ENST00000312783	NM_198436.1	162	Aaa/Gaa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691916	30691916	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	131	320	0	ENST00000359013.4:c.493T>C	p.Ser165Pro	p.S165P	ENST00000359013	NM_001024847.2	165	Tct/Cct																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163857	32163857	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	137	485	1	ENST00000375023.3:c.5369G>T	p.Gly1790Val	p.G1790V	ENST00000375023	NM_004557.3	1790	gGg/gTg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187986	32187987	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	202	672	0	ENST00000375023.3:c.1234dup	p.Leu412ProfsTer36	p.L412Pfs*36	ENST00000375023	NM_004557.3	412	ctc/cCtc																																																																															
HGF	3082	MSKCC	GRCh37	7	81358948	81358948	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	38	378	0	ENST00000222390.5:c.1013A>G	p.Asp338Gly	p.D338G	ENST00000222390	NM_000601.4	338	gAc/gGc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146253	38146253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	188	464	0	ENST00000317025.8:c.3253G>A	p.Val1085Met	p.V1085M	ENST00000317025	NM_023034.1	1085	Gtg/Atg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499798	8499798	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	170	441	0	ENST00000356435.5:c.2171A>C	p.Asn724Thr	p.N724T	ENST00000356435		724	aAc/aCc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98244439	98244439	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	125	409	0	ENST00000331920.6:c.631A>G	p.Thr211Ala	p.T211A	ENST00000331920	NM_000264.3	211	Aca/Gca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400302	139400302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	57	666	0	ENST00000277541.6:c.4046C>T	p.Ala1349Val	p.A1349V	ENST00000277541	NM_017617.3	1349	gCt/gTt																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564407	139564407	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	104	721	0	ENST00000308874.7:c.355C>A	p.Gln119Lys	p.Q119K	ENST00000308874		119	Cag/Aag																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139815543	139815543	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	188	683	0	ENST00000247668.2:c.1014G>T	p.Leu338Phe	p.L338F	ENST00000247668	NM_021138.3	338	ttG/ttT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412462	63412463	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	47	695	0	ENST00000330258.3:c.704_705insA	p.Gly236TrpfsTer16	p.G236Wfs*16	ENST00000330258	NM_152424.3	235	cct/ccAt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123190080	123190081	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0053489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	94	296	0	ENST00000218089.9:c.1304dup	p.Leu436AlafsTer5	p.L436Afs*5	ENST00000218089	NM_001042749.1	433	-/A																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0053490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	224	432	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	315	880	0	ENST00000269305.4:c.394A>C	p.Lys132Gln	p.K132Q	ENST00000269305	NM_001126112.2	132	Aag/Cag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	52	265	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288246	21288246	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200712124		P-0053490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	212	545	0	ENST00000354336.3:c.491G>A	p.Arg164Gln	p.R164Q	ENST00000354336	NM_005207.3	164	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0053493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	529	497	2	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
AKT2	208	MSKCC	GRCh37	19	40742257	40742257	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1680	727	777	0	ENST00000392038.2:c.867C>G	p.Ile289Met	p.I289M	ENST00000392038	NM_001626.4	289	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578410	7578410	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	550	826	0	ENST00000269305.4:c.520A>T	p.Arg174Trp	p.R174W	ENST00000269305	NM_001126112.2	174	Agg/Tgg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741849	17741849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	71	192	1	ENST00000250003.3:c.520G>A	p.Ala174Thr	p.A174T	ENST00000250003	NM_002478.4	174	Gcc/Acc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581225	48581226	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATTCA			P-0053493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	155	526	0	ENST00000342988.3:c.536_540dup	p.Thr181PhefsTer23	p.T181Ffs*23	ENST00000342988	NM_005359.5	177	cat/cATTCAat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974708	21974708	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	333	432	0	ENST00000304494.5:c.119del	p.Ala40AspfsTer13	p.A40Dfs*13	ENST00000304494	NM_000077.4	40	gCa/ga																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61213412	61213412	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0053498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	150	312	0	ENST00000301761.2:c.371-1G>A		p.X124_splice	ENST00000301761	NM_017841.2	124																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0053498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	806	338	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610227	81610227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	85	424	0	ENST00000298171.2:c.1825C>T	p.Arg609Ter	p.R609*	ENST00000298171	NM_000369.2	609	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0053498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	303	775	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29557291	29557291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	142	182	0	ENST00000358273.4:c.3004C>A	p.Leu1002Ile	p.L1002I	ENST00000358273	NM_001042492.2	1002	Ctt/Att																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40379681	40379681	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	31	583	0	ENST00000293328.3:c.151C>G	p.Pro51Ala	p.P51A	ENST00000293328	NM_012448.3	51	Cca/Gca																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870504	40870504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	160	476	1	ENST00000428826.2:c.899G>A	p.Arg300Gln	p.R300Q	ENST00000428826		300	cGg/cAg																																																																															
HGF	3082	MSKCC	GRCh37	7	81386571	81386571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	213	366	0	ENST00000222390.5:c.416C>T	p.Thr139Ile	p.T139I	ENST00000222390	NM_000601.4	139	aCa/aTa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106524643	106524643	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	166	227	0	ENST00000359195.3:c.2804A>G	p.Tyr935Cys	p.Y935C	ENST00000359195	NM_002649.2	935	tAc/tGc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968205	68968205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	118	491	0	ENST00000288368.4:c.1234G>A	p.Gly412Arg	p.G412R	ENST00000288368	NM_024870.2	412	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579575	7579575	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	362	566	0	ENST00000269305.4:c.112delC	p.Gln38LysfsTer6	p.Q38Kfs*6	ENST00000269305	NM_001126112.2	38	Caa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0053499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	56	278	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281668	49281668	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201815757		P-0053499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1444	155	524	0	ENST00000282018.3:c.715C>T	p.Arg239Trp	p.R239W	ENST00000282018	NM_020377.2	239	Cgg/Tgg																																																																															
IGF1	3479	MSKCC	GRCh37	12	102869550	102869550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	106	431	0	ENST00000307046.8:c.91C>T	p.His31Tyr	p.H31Y	ENST00000307046	NM_001111285.1	31	Cat/Tat																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984671	11984674	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGAG	AGAG	-			P-0053499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	33	222	0	ENST00000353533.5:c.222_225delGAGA		p.X74_splice	ENST00000353533	NM_003010.3	74																																																																																
APC	324	MSKCC	GRCh37	5	112175147	112175148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0053499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	39	147	0	ENST00000257430.4:c.3859dup	p.Ile1287AsnfsTer4	p.I1287Nfs*4	ENST00000257430	NM_000038.5	1286	gaa/gAaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0037730-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			81	33	472	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115268970	115268970	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037730-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			137	26	435	0	ENST00000438362.2:c.1640A>T	p.Gln547Leu	p.Q547L	ENST00000438362	NM_001242891.1	547	cAg/cTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948520	71948532	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGGCCGTGGTG	CGGGGCCGTGGTG	-			P-0037730-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			259	31	1087	0	ENST00000298229.2:c.3232_3244del	p.Arg1078GlyfsTer49	p.R1078Gfs*49	ENST00000298229	NM_001567.3	1078	CGGGGCCGTGGTGgg/gg																																																																															
RAB35	11021	MSKCC	GRCh37	12	120554432	120554432	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037730-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			206	15	135	0	ENST00000229340.5:c.23T>C	p.Leu8Pro	p.L8P	ENST00000229340	NM_006861.6	8	cTc/cCc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240220	41240220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037730-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			180	10	139	0	ENST00000379561.5:c.130C>T	p.Pro44Ser	p.P44S	ENST00000379561	NM_002015.3	44	Ccg/Tcg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911258	29911258	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037730-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			155	10	528	2	ENST00000376809.5:c.557G>T	p.Gly186Val	p.G186V	ENST00000376809	NM_002116.7	186	gGc/gTc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	59	507	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0053065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	215	705	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121435467	121435467	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0053065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	128	872	0	ENST00000257555.6:c.1500C>A	p.His500Gln	p.H500Q	ENST00000257555		500	caC/caA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0053332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	7	556	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0053355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	95	439	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519980		P-0053355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	326	730	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492890	56492906	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCCAGGGCCAGAGG	GCAGCCAGGGCCAGAGG	-			P-0053355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	105	428	0	ENST00000407977.2:c.33_49del	p.Leu12AspfsTer22	p.L12Dfs*22	ENST00000407977		11	gcCCTCTGGCCCTGGCTGCtg/gctg																																																																															
ATR	545	MSKCC	GRCh37	3	142215936	142215936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	93	455	0	ENST00000350721.4:c.5657G>A	p.Arg1886Gln	p.R1886Q	ENST00000350721	NM_001184.3	1886	cGa/cAa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038895	47038895	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0053358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	190	747	0	ENST00000329236.7:c.670+1G>A		p.X224_splice	ENST00000329236	NM_001204466.1	224																																																																																
NF1	4763	MSKCC	GRCh37	17	29653026	29653027	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGCAGT			P-0053358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	113	430	0	ENST00000358273.4:c.5026_5031dup	p.Ala1676_Val1677dup	p.A1676_V1677dup	ENST00000358273	NM_001042492.2	1676	tcc/tcCGCAGTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29653034	29653034	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	122	421	0	ENST00000358273.4:c.5032T>G	p.Tyr1678Asp	p.Y1678D	ENST00000358273	NM_001042492.2	1678	Tat/Gat																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66518990	66518990	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	43	455	0	ENST00000358598.2:c.271G>C	p.Val91Leu	p.V91L	ENST00000358598	NM_212471.2	91	Gtt/Ctt																																																																															
CARM1	10498	MSKCC	GRCh37	19	10982442	10982442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	12	37	0	ENST00000327064.4:c.64G>T	p.Gly22Cys	p.G22C	ENST00000327064	NM_199141.1	22	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576875	7576884	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAGTGGTT	TCCAGTGGTT	-			P-0053392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	189	757	0	ENST00000269305.4:c.962_971del	p.Lys321MetfsTer21	p.K321Mfs*21	ENST00000269305	NM_001126112.2	321	aAACCACTGGAt/at																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291889	15291889	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	39	1180	0	ENST00000263388.2:c.2877C>G	p.Cys959Trp	p.C959W	ENST00000263388	NM_000435.2	959	tgC/tgG																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061116	38061139	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGCCGCCCTTGGCGCCGCTGCC	AGGGCCGCCCTTGGCGCCGCTGCC	GGGGCAGCGG			P-0053392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	15	265	0	ENST00000250448.2:c.850_873delinsCCGCTGCCCC	p.Gly284ProfsTer14	p.G284Pfs*14	ENST00000250448	NM_004496.3	284	GGCAGCGGCGCCAAGGGCGGCCCT/CCGCTGCCCC																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	122	836	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244091	153244091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	118	642	1	ENST00000281708.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000281708	NM_033632.3	689	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578217	7578217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	271	869	0	ENST00000269305.4:c.632C>T	p.Thr211Ile	p.T211I	ENST00000269305	NM_001126112.2	211	aCt/aTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207092	1207092	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	122	1067	0	ENST00000326873.7:c.180del	p.Tyr60Ter	p.Y60*	ENST00000326873	NM_000455.4	60	taC/ta																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038879	12038879	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	82	417	0	ENST00000396373.4:c.1172A>G	p.Tyr391Cys	p.Y391C	ENST00000396373	NM_001987.4	391	tAt/tGt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43784254	43784254	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	149	763	1	ENST00000382044.4:c.232C>T	p.Arg78Ter	p.R78*	ENST00000382044	NM_001141980.1	78	Cga/Tga																																																																															
RECQL	5965	MSKCC	GRCh37	12	21643205	21643205	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	120	760	0	ENST00000421138.2:c.322G>C	p.Glu108Gln	p.E108Q	ENST00000421138		108	Gag/Cag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906408	32906408	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0053395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	33	280	0	ENST00000380152.3:c.794-1G>T		p.X265_splice	ENST00000380152		265																																																																																
CTCF	10664	MSKCC	GRCh37	16	67645261	67645261	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	47	783	0	ENST00000264010.4:c.526G>T	p.Glu176Ter	p.E176*	ENST00000264010	NM_006565.3	176	Gag/Tag																																																																															
EZH1	2145	MSKCC	GRCh37	17	40854940	40854940	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	112	710	0	ENST00000428826.2:c.2138C>A	p.Ala713Asp	p.A713D	ENST00000428826		713	gCc/gAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021085	31021085	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0053395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	90	615	2	ENST00000375687.4:c.1086-2A>G		p.X362_splice	ENST00000375687	NM_015338.5	362																																																																																
SETD2	29072	MSKCC	GRCh37	3	47127696	47127696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	172	516	0	ENST00000409792.3:c.5386C>T	p.Leu1796Phe	p.L1796F	ENST00000409792	NM_014159.6	1796	Ctt/Ttt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643328	52643328	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0053395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	137	417	0	ENST00000394830.3:c.2567+1G>A		p.X856_splice	ENST00000394830	NM_018313.4	856																																																																																
PRKCI	5584	MSKCC	GRCh37	3	169991094	169991094	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	50	502	0	ENST00000295797.4:c.612T>A	p.Asp204Glu	p.D204E	ENST00000295797	NM_002740.5	204	gaT/gaA																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672861	30672861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	156	879	0	ENST00000376406.3:c.4099G>A	p.Val1367Ile	p.V1367I	ENST00000376406	NM_014641.2	1367	Gtc/Atc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157510899	157510899	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	186	645	0	ENST00000346085.5:c.3674C>G	p.Pro1225Arg	p.P1225R	ENST00000346085	NM_020732.3	1225	cCa/cGa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38273396	38273410	+	inframe_deletion	In_Frame_Del	DEL	AGGCCAGATACTCCA	AGGCCAGATACTCCA	-			P-0053395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	95	1169	0	ENST00000425967.3:c.1925_1939del	p.Met642_Ser647delinsThr	p.M642_S647delinsT	ENST00000425967	NM_001174067.1	642	aTGGAGTATCTGGCCTcc/acc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137218500	137218500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	20	137	0	ENST00000481739.1:c.23C>T	p.Pro8Leu	p.P8L	ENST00000481739	NM_002957.4	8	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587782082		P-0053397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	333	767	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44921908	44921908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	98	481	1	ENST00000377967.4:c.1442G>A	p.Arg481His	p.R481H	ENST00000377967	NM_021140.2	481	cGc/cAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641507	18641507	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0053397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	316	405	0	ENST00000266497.5:c.2509del	p.Ile837PhefsTer21	p.I837Ffs*21	ENST00000266497		836	Aaa/aa																																																																															
RB1	5925	MSKCC	GRCh37	13	48953787	48953787	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0053397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	188	190	0	ENST00000267163.4:c.1389+1G>T		p.X463_splice	ENST00000267163	NM_000321.2	463																																																																																
MED12	9968	MSKCC	GRCh37	X	70342177	70342177	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	154	673	0	ENST00000374080.3:c.1229A>G	p.Asn410Ser	p.N410S	ENST00000374080		410	aAc/aGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			150	55	468	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971082	21971083	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	174	468	0	ENST00000304494.5:c.275dup	p.Asp92GlufsTer28	p.D92Efs*28	ENST00000304494	NM_000077.4	92	gac/gaAc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986699	36986709	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCGCCTGCG	CGCCGCCTGCG	-			P-0026112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			63	57	39	0	ENST00000354822.5:c.980_990del	p.Ala327GlyfsTer108	p.A327Gfs*108	ENST00000354822	NM_001079668.2	327	gCGCAGGCGGCG/g																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18658388	18658388	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	55	349	0	ENST00000266497.5:c.3193A>T	p.Ile1065Leu	p.I1065L	ENST00000266497		1065	Ata/Tta																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436203	110436203	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	168	547	0	ENST00000375856.3:c.2198C>G	p.Ala733Gly	p.A733G	ENST00000375856	NM_003749.2	733	gCc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578202	7578235	+	frameshift_variant	Frame_Shift_Del	DEL	ACACTATGTCGAAAAGTGTTTCTGTCATCCAAAT	ACACTATGTCGAAAAGTGTTTCTGTCATCCAAAT	-			P-0044517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	386	664	1	ENST00000269305.4:c.614_647del	p.Tyr205TrpfsTer31	p.Y205Wfs*31	ENST00000269305	NM_001126112.2	205	tATTTGGATGACAGAAACACTTTTCGACATAGTGTg/tg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772041	135772041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	116	499	1	ENST00000298552.3:c.3076G>A	p.Ala1026Thr	p.A1026T	ENST00000298552	NM_001162426.1	1026	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0047187-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			736	138	967	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970969	21970969	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047187-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			435	106	677	0	ENST00000304494.5:c.389T>A	p.Leu130Gln	p.L130Q	ENST00000304494	NM_000077.4	130	cTg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0052016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			818	635	738	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			982	348	1099	0	ENST00000269305.4:c.469G>C	p.Val157Leu	p.V157L	ENST00000269305	NM_001126112.2	157	Gtc/Ctc																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551889	150551889	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	195	504	0	ENST00000369026.2:c.118A>G	p.Lys40Glu	p.K40E	ENST00000369026	NM_021960.4	40	Aag/Gag																																																																															
MST1R	4486	MSKCC	GRCh37	3	49927943	49927943	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			909	142	865	1	ENST00000296474.3:c.3785A>G	p.Tyr1262Cys	p.Y1262C	ENST00000296474	NM_002447.2	1262	tAt/tGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151866306	151866306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			878	47	580	0	ENST00000262189.6:c.9482G>A	p.Arg3161Lys	p.R3161K	ENST00000262189	NM_170606.2	3161	aGg/aAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0053068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	205	316	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106327	27106328	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0053068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	295	381	2	ENST00000324856.7:c.5939dup	p.Cys1981LeufsTer18	p.C1981Lfs*18	ENST00000324856	NM_006015.4	1980	cgc/cGgc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32915234	32915234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	256	366	1	ENST00000380152.3:c.6742C>T	p.His2248Tyr	p.H2248Y	ENST00000380152		2248	Cat/Tat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040663	47040664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0053068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	274	267	0	ENST00000329236.7:c.1064_1065insG	p.Asp356ArgfsTer9	p.D356Rfs*9	ENST00000329236	NM_001204466.1	355	gtc/gtGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0053219-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			749	121	968	4	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519895		P-0053219-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	8	192	0	ENST00000281708.4:c.1394G>T	p.Arg465Leu	p.R465L	ENST00000281708	NM_033632.3	465	cGt/cTt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412336	139412336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053219-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			927	70	1068	0	ENST00000277541.6:c.1309G>A	p.Glu437Lys	p.E437K	ENST00000277541	NM_017617.3	437	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101301	27101301	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			790	252	918	0	ENST00000324856.7:c.4583del	p.Arg1528GlnfsTer37	p.R1528Qfs*37	ENST00000324856	NM_006015.4	1528	cGa/ca																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120529651	120529651	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			760	204	654	0	ENST00000256646.2:c.806G>T	p.Cys269Phe	p.C269F	ENST00000256646	NM_024408.3	269	tGt/tTt																																																																															
RET	5979	MSKCC	GRCh37	10	43604478	43604478	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			661	198	658	0	ENST00000355710.3:c.1064-1G>T		p.X355_splice	ENST00000355710	NM_020975.4	355																																																																																
TET1	80312	MSKCC	GRCh37	10	70332806	70332806	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			712	105	662	0	ENST00000373644.4:c.711T>A	p.Ser237Arg	p.S237R	ENST00000373644	NM_030625.2	237	agT/agA																																																																															
TET1	80312	MSKCC	GRCh37	10	70405363	70405363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			727	106	608	0	ENST00000373644.4:c.2878del	p.Glu960LysfsTer66	p.E960Kfs*66	ENST00000373644	NM_030625.2	959	ttG/tt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12006400	12006400	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			492	261	570	1	ENST00000396373.4:c.368A>T	p.Gln123Leu	p.Q123L	ENST00000396373	NM_001987.4	123	cAg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			464	474	533	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061519	38061519	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			350	67	319	0	ENST00000250448.2:c.470G>T	p.Gly157Val	p.G157V	ENST00000250448	NM_004496.3	157	gGc/gTc																																																																															
MGA	23269	MSKCC	GRCh37	15	42019398	42019398	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			525	182	533	0	ENST00000219905.7:c.3451G>T	p.Glu1151Ter	p.E1151*	ENST00000219905	NM_001164273.1	1151	Gaa/Taa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647447	23647447	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			650	197	587	0	ENST00000261584.4:c.420G>T	p.Lys140Asn	p.K140N	ENST00000261584	NM_024675.3	140	aaG/aaT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992156	72992157	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	A			P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			860	127	926	0	ENST00000268489.5:c.1888_1889delinsT	p.Gly630TrpfsTer30	p.G630Wfs*30	ENST00000268489	NM_006885.3	630	GGg/Tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			606	246	761	1	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39537541	39537541	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			361	92	300	0	ENST00000262039.4:c.75C>G	p.Ser25Arg	p.S25R	ENST00000262039	NM_002647.2	25	agC/agG																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602736	10602736	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			763	278	956	0	ENST00000171111.5:c.842T>C	p.Leu281Pro	p.L281P	ENST00000171111	NM_203500.1	281	cTg/cCg																																																																															
CIC	23152	MSKCC	GRCh37	19	42794048	42794048	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			600	235	680	0	ENST00000575354.2:c.1409G>C	p.Arg470Pro	p.R470P	ENST00000575354	NM_015125.3	470	cGg/cCg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716271	52716271	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			650	273	815	1	ENST00000322088.6:c.715G>T	p.Asp239Tyr	p.D239Y	ENST00000322088	NM_014225.5	239	Gat/Tat																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082812	16082812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			102	22	52	0	ENST00000281043.3:c.626C>T	p.Pro209Leu	p.P209L	ENST00000281043	NM_005378.4	209	cCg/cTg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793287	242793287	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			927	123	872	0	ENST00000334409.5:c.790C>A	p.Arg264Ser	p.R264S	ENST00000334409	NM_005018.2	264	Cgc/Agc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46256427	46256427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			658	90	541	0	ENST00000371998.3:c.655C>A	p.Gln219Lys	p.Q219K	ENST00000371998		219	Cag/Aag																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265103	46265103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			621	85	551	0	ENST00000371998.3:c.1973G>C	p.Gly658Ala	p.G658A	ENST00000371998		658	gGa/gCa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467419	66467419	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			445	69	375	0	ENST00000273854.3:c.850G>T	p.Val284Leu	p.V284L	ENST00000273854	NM_004439.5	284	Gtg/Ttg																																																																															
HGF	3082	MSKCC	GRCh37	7	81381523	81381523	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			440	69	392	0	ENST00000222390.5:c.538C>A	p.Pro180Thr	p.P180T	ENST00000222390	NM_000601.4	180	Cct/Act																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38314967	38314967	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			910	64	741	0	ENST00000425967.3:c.97G>T	p.Gly33Trp	p.G33W	ENST00000425967	NM_001174067.1	33	Ggg/Tgg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371971	55371971	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	80	353	0	ENST00000297316.4:c.661A>T	p.Thr221Ser	p.T221S	ENST00000297316	NM_022454.3	221	Acg/Tcg																																																																															
ATRX	546	MSKCC	GRCh37	X	76874402	76874402	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0053220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			222	173	261	0	ENST00000373344.5:c.5320A>T	p.Lys1774Ter	p.K1774*	ENST00000373344	NM_000489.3	1774	Aag/Tag																																																																															
TET1	80312	MSKCC	GRCh37	10	70333266	70333266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			371	34	722	0	ENST00000373644.4:c.1171G>A	p.Glu391Lys	p.E391K	ENST00000373644	NM_030625.2	391	Gag/Aag																																																																															
XPO1	7514	MSKCC	GRCh37	2	61712950	61712950	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			217	24	559	0	ENST00000401558.2:c.2461C>G	p.Gln821Glu	p.Q821E	ENST00000401558	NM_003400.3	821	Caa/Gaa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900245	101900245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			184	34	422	0	ENST00000374994.4:c.679G>A	p.Glu227Lys	p.E227K	ENST00000374994	NM_004612.2	227	Gaa/Aaa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481859	56481859	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			366	55	777	1	ENST00000267101.3:c.787C>G	p.Leu263Val	p.L263V	ENST00000267101	NM_001982.3	263	Ctt/Gtt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044719	47044719	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			440	60	1064	1	ENST00000329236.7:c.1885C>T	p.Gln629Ter	p.Q629*	ENST00000329236	NM_001204466.1	629	Cag/Tag																																																																															
RIT1	6016	MSKCC	GRCh37	1	155880494	155880494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			505	35	734	0	ENST00000368323.3:c.59G>A	p.Arg20Gln	p.R20Q	ENST00000368323	NM_006912.5	20	cGg/cAg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157510806	157510806	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			403	41	655	1	ENST00000346085.5:c.3586del	p.Gln1196SerfsTer15	p.Q1196Sfs*15	ENST00000346085	NM_020732.3	1194	aCc/ac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106159	27106159	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			322	21	598	0	ENST00000324856.7:c.5770G>T	p.Glu1924Ter	p.E1924*	ENST00000324856	NM_006015.4	1924	Gag/Tag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636758	8636758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			266	31	547	0	ENST00000356435.5:c.151C>T	p.Pro51Ser	p.P51S	ENST00000356435		51	Cca/Tca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399799	139399799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			482	28	918	2	ENST00000277541.6:c.4549G>A	p.Asp1517Asn	p.D1517N	ENST00000277541	NM_017617.3	1517	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	52	647	1	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
AMER1	139285	MSKCC	GRCh37	X	63411197	63411197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	52	783	0	ENST00000330258.3:c.1970G>T	p.Arg657Met	p.R657M	ENST00000330258	NM_152424.3	657	aGg/aTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949089	71949089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			389	93	972	1	ENST00000298229.2:c.3556C>T	p.Pro1186Ser	p.P1186S	ENST00000298229	NM_001567.3	1186	Ccg/Tcg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858288	9858288	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			197	15	506	0	ENST00000330684.3:c.3113C>G	p.Thr1038Arg	p.T1038R	ENST00000330684	NM_001134407.1	1038	aCa/aGa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473672	67473672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			456	58	740	0	ENST00000327367.4:c.752C>T	p.Ser251Leu	p.S251L	ENST00000327367	NM_005902.3	251	tCg/tTg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139566418	139566418	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	81	956	0	ENST00000308874.7:c.677C>A	p.Ser226Ter	p.S226*	ENST00000308874		226	tCg/tAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789696	3789696	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			244	14	555	0	ENST00000262367.5:c.4163C>G	p.Ser1388Cys	p.S1388C	ENST00000262367	NM_004380.2	1388	tCt/tGt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600335	10600335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			355	75	745	0	ENST00000171111.5:c.1520G>A	p.Arg507Gln	p.R507Q	ENST00000171111	NM_203500.1	507	cGa/cAa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48028004	48028004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			189	10	372	0	ENST00000234420.5:c.2882G>A	p.Arg961Lys	p.R961K	ENST00000234420	NM_000179.2	961	aGa/aAa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81979789	81979789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	18	514	0	ENST00000359376.3:c.3491C>T	p.Ser1164Phe	p.S1164F	ENST00000359376	NM_002661.3	1164	tCc/tTc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046245	128046245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	24	444	0	ENST00000285398.2:c.1018C>T	p.Leu340Phe	p.L340F	ENST00000285398	NM_000122.1	340	Ctt/Ttt																																																																															
POLE	5426	MSKCC	GRCh37	12	133225554	133225554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			476	38	930	0	ENST00000320574.5:c.4110G>T	p.Gln1370His	p.Q1370H	ENST00000320574	NM_006231.2	1370	caG/caT																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864552	57864552	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			467	42	962	0	ENST00000228682.2:c.2029G>C	p.Asp677His	p.D677H	ENST00000228682	NM_005269.2	677	Gat/Cat																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953288	17953288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	61	1176	1	ENST00000458235.1:c.698C>T	p.Ser233Leu	p.S233L	ENST00000458235	NM_000215.3	233	tCg/tTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094325	27094325	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	29	485	0	ENST00000324856.7:c.3033G>T	p.Leu1011Phe	p.L1011F	ENST00000324856	NM_006015.4	1011	ttG/ttT																																																																															
STK40	83931	MSKCC	GRCh37	1	36824360	36824360	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			433	55	683	0	ENST00000373129.3:c.176C>A	p.Thr59Lys	p.T59K	ENST00000373129	NM_032017.1	59	aCg/aAg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937141	36937141	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			475	71	1024	0	ENST00000361632.4:c.1178T>A	p.Leu393His	p.L393H	ENST00000361632		393	cTc/cAc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166191	118166191	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			307	28	447	0	ENST00000369448.3:c.701A>T	p.Lys234Met	p.K234M	ENST00000369448	NM_017709.3	234	aAg/aTg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156841548	156841548	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			436	71	925	2	ENST00000524377.1:c.850+1G>T		p.X284_splice	ENST00000524377	NM_002529.3	284																																																																																
NTRK1	4914	MSKCC	GRCh37	1	156845892	156845892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			538	70	1009	2	ENST00000524377.1:c.1522C>T	p.Arg508Trp	p.R508W	ENST00000524377	NM_002529.3	508	Cgg/Tgg																																																																															
IGF2	3481	MSKCC	GRCh37	11	2156620	2156620	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			356	65	830	0	ENST00000434045.2:c.302G>T	p.Cys101Phe	p.C101F	ENST00000434045	NM_001127598.1	101	tGt/tTt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21630864	21630864	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			273	49	614	0	ENST00000421138.2:c.740A>C	p.Asn247Thr	p.N247T	ENST00000421138		247	aAc/aCc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913071	32913071	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			229	24	554	0	ENST00000380152.3:c.4579G>C	p.Ala1527Pro	p.A1527P	ENST00000380152		1527	Gct/Cct																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435657	110435657	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			422	54	692	0	ENST00000375856.3:c.2744G>C	p.Ser915Thr	p.S915T	ENST00000375856	NM_003749.2	915	aGc/aCc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88669568	88669568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			223	25	504	1	ENST00000360948.2:c.1330G>A	p.Val444Ile	p.V444I	ENST00000360948	NM_001012338.2	444	Gtc/Atc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633447	3633447	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			467	77	1000	1	ENST00000294008.3:c.4804A>T	p.Thr1602Ser	p.T1602S	ENST00000294008	NM_032444.2	1602	Act/Tct																																																																															
PALB2	79728	MSKCC	GRCh37	16	23614908	23614908	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs180177137		P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			283	33	514	1	ENST00000261584.4:c.3433G>T	p.Gly1145Cys	p.G1145C	ENST00000261584	NM_024675.3	1145	Ggt/Tgt																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870637	40870637	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	62	553	0	ENST00000428826.2:c.768-2A>G		p.X256_splice	ENST00000428826		256																																																																																
BRIP1	83990	MSKCC	GRCh37	17	59857639	59857639	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			127	31	310	0	ENST00000259008.2:c.1918A>T	p.Ile640Phe	p.I640F	ENST00000259008	NM_032043.2	640	Atc/Ttc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39535261	39535261	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			221	17	335	0	ENST00000262039.4:c.5G>T	p.Gly2Val	p.G2V	ENST00000262039	NM_002647.2	2	gGg/gTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5273588	5273588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			248	47	518	0	ENST00000357368.4:c.244G>A	p.Glu82Lys	p.E82K	ENST00000357368	NM_002850.3	82	Gag/Aag																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31393148	31393148	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139777286		P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			235	73	467	0	ENST00000328111.2:c.2236G>A	p.Val746Met	p.V746M	ENST00000328111	NM_006892.3	746	Gtg/Atg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275028	41275028	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	14	390	0	ENST00000349496.5:c.1194G>T	p.Met398Ile	p.M398I	ENST00000349496	NM_001904.3	398	atG/atT																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436323	52436323	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	65	885	0	ENST00000460680.1:c.2171A>T	p.Tyr724Phe	p.Y724F	ENST00000460680	NM_004656.3	724	tAc/tTc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799628	72799628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	46	616	0	ENST00000325599.8:c.1541C>A	p.Ala514Asp	p.A514D	ENST00000325599	NM_018130.2	514	gCc/gAc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430462	181430462	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			476	68	970	0	ENST00000325404.1:c.314A>T	p.His105Leu	p.H105L	ENST00000325404	NM_003106.3	105	cAc/cTc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1932356	1932356	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			263	15	488	0	ENST00000382891.5:c.1414G>T	p.Val472Leu	p.V472L	ENST00000382891	NM_133335.3	472	Gta/Tta																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55152036	55152036	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			371	21	652	0	ENST00000257290.5:c.2468A>T	p.Asn823Ile	p.N823I	ENST00000257290	NM_006206.4	823	aAc/aTc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753402	57753402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			139	13	444	0	ENST00000274289.3:c.722G>C	p.Cys241Ser	p.C241S	ENST00000274289	NM_006622.3	241	tGt/tCt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520462	176520462	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			475	41	1025	0	ENST00000292408.4:c.1307T>A	p.Val436Glu	p.V436E	ENST00000292408	NM_213647.1	436	gTg/gAg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170124	32170124	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			591	64	1087	0	ENST00000375023.3:c.3484C>A	p.Pro1162Thr	p.P1162T	ENST00000375023	NM_004557.3	1162	Cct/Act																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32171991	32171991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			470	59	719	2	ENST00000375023.3:c.3041C>A	p.Pro1014His	p.P1014H	ENST00000375023	NM_004557.3	1014	cCc/cAc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162394450	162394450	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			155	10	360	0	ENST00000366898.1:c.619-1G>T		p.X207_splice	ENST00000366898	NM_004562.2	207																																																																																
SMO	6608	MSKCC	GRCh37	7	128846404	128846404	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	50	743	0	ENST00000249373.3:c.1240G>C	p.Val414Leu	p.V414L	ENST00000249373	NM_005631.4	414	Gtg/Ctg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270511	98270511	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	56	534	0	ENST00000331920.6:c.133C>G	p.Pro45Ala	p.P45A	ENST00000331920	NM_000264.3	45	Ccg/Gcg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933706	39933706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			363	31	780	0	ENST00000378444.4:c.893C>T	p.Pro298Leu	p.P298L	ENST00000378444	NM_001123385.1	298	cCt/cTt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411079	63411079	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			329	53	793	0	ENST00000330258.3:c.2088G>T	p.Arg696Ser	p.R696S	ENST00000330258	NM_152424.3	696	agG/agT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163615	32163615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			526	75	927	0	ENST00000375023.3:c.5611C>T	p.Arg1871Cys	p.R1871C	ENST00000375023	NM_004557.3	1871	Cgt/Tgt																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2491335	2491335	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			564	48	1137	0	ENST00000355716.4:c.378C>G	p.Phe126Leu	p.F126L	ENST00000355716	NM_003820.2	126	ttC/ttG																																																																															
CDC73	79577	MSKCC	GRCh37	1	193119499	193119499	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			226	19	348	0	ENST00000367435.3:c.894C>G	p.Phe298Leu	p.F298L	ENST00000367435	NM_024529.4	298	ttC/ttG																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206650036	206650036	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			362	61	586	0	ENST00000367120.3:c.556G>C	p.Glu186Gln	p.E186Q	ENST00000367120	NM_014002.3	186	Gag/Cag																																																																															
PARP1	142	MSKCC	GRCh37	1	226567716	226567716	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			499	39	756	0	ENST00000366794.5:c.1450G>C	p.Glu484Gln	p.E484Q	ENST00000366794	NM_001618.3	484	Gag/Cag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690822	89690822	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			154	12	412	0	ENST00000371953.3:c.229G>C	p.Asp77His	p.D77H	ENST00000371953	NM_000314.4	77	Gac/Cac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443845	49443845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			506	45	996	0	ENST00000301067.7:c.3526G>T	p.Ala1176Ser	p.A1176S	ENST00000301067	NM_003482.3	1176	Gca/Tca																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109706	115109706	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			549	33	1057	1	ENST00000257566.3:c.2172C>G	p.Ile724Met	p.I724M	ENST00000257566	NM_016569.3	724	atC/atG																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557875	21557875	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	42	637	0	ENST00000382592.4:c.1970G>T	p.Arg657Met	p.R657M	ENST00000382592	NM_014572.2	657	aGg/aTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913539	32913539	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			190	24	546	0	ENST00000380152.3:c.5047C>G	p.Gln1683Glu	p.Q1683E	ENST00000380152		1683	Cag/Gag																																																																															
MGA	23269	MSKCC	GRCh37	15	42042136	42042136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			213	18	572	0	ENST00000219905.7:c.6331G>A	p.Asp2111Asn	p.D2111N	ENST00000219905	NM_001164273.1	2111	Gat/Aat																																																																															
MGA	23269	MSKCC	GRCh37	15	42042313	42042313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			226	26	522	0	ENST00000219905.7:c.6508G>A	p.Asp2170Asn	p.D2170N	ENST00000219905	NM_001164273.1	2170	Gac/Aac																																																																															
MGA	23269	MSKCC	GRCh37	15	42042327	42042327	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	25	560	0	ENST00000219905.7:c.6522G>A	p.Trp2174Ter	p.W2174*	ENST00000219905	NM_001164273.1	2174	tgG/tgA																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628235	90628235	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			467	32	982	0	ENST00000330062.3:c.1176C>G	p.Ile392Met	p.I392M	ENST00000330062	NM_002168.2	392	atC/atG																																																																															
FANCA	2175	MSKCC	GRCh37	16	89828373	89828373	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			263	16	547	0	ENST00000389301.3:c.2836C>G	p.Leu946Val	p.L946V	ENST00000389301	NM_000135.2	946	Ctt/Gtt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554337	63554337	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			349	53	748	0	ENST00000307078.5:c.402C>G	p.Ile134Met	p.I134M	ENST00000307078	NM_004655.3	134	atC/atG																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118996	70118996	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs61740803		P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	38	906	0	ENST00000245479.2:c.568G>C	p.Glu190Gln	p.E190Q	ENST00000245479	NM_000346.3	190	Gag/Cag																																																																															
TCF3	6929	MSKCC	GRCh37	19	1632399	1632399	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			375	51	900	0	ENST00000344749.5:c.151G>C	p.Glu51Gln	p.E51Q	ENST00000344749	NM_001136139.2	51	Gag/Cag																																																																															
CARM1	10498	MSKCC	GRCh37	19	11030327	11030327	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			322	19	769	0	ENST00000327064.4:c.1077C>G	p.Phe359Leu	p.F359L	ENST00000327064	NM_199141.1	359	ttC/ttG																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288529	15288529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			134	11	300	0	ENST00000263388.2:c.4210G>A	p.Glu1404Lys	p.E1404K	ENST00000263388	NM_000435.2	1404	Gag/Aag																																																																															
XPO1	7514	MSKCC	GRCh37	2	61711155	61711155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			218	22	554	0	ENST00000401558.2:c.2594C>T	p.Ala865Val	p.A865V	ENST00000401558	NM_003400.3	865	gCt/gTt																																																																															
CASP8	841	MSKCC	GRCh37	2	202136261	202136261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	35	563	0	ENST00000358485.4:c.505G>A	p.Glu169Lys	p.E169K	ENST00000358485	NM_001080125.1	169	Gaa/Aaa																																																																															
ATR	545	MSKCC	GRCh37	3	142232399	142232399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	22	489	0	ENST00000350721.4:c.4585C>T	p.Leu1529Phe	p.L1529F	ENST00000350721	NM_001184.3	1529	Ctt/Ttt																																																																															
ATR	545	MSKCC	GRCh37	3	142268460	142268460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			209	12	481	0	ENST00000350721.4:c.3032C>T	p.Ser1011Phe	p.S1011F	ENST00000350721	NM_001184.3	1011	tCt/tTt																																																																															
BCL6	604	MSKCC	GRCh37	3	187444644	187444644	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			412	34	605	0	ENST00000232014.4:c.1583C>A	p.Ser528Tyr	p.S528Y	ENST00000232014	NM_001130845.1	528	tCt/tAt																																																																															
KDR	3791	MSKCC	GRCh37	4	55946290	55946290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			245	30	416	0	ENST00000263923.4:c.3889G>A	p.Glu1297Lys	p.E1297K	ENST00000263923	NM_002253.2	1297	Gaa/Aaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467552	66467552	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			213	15	404	0	ENST00000273854.3:c.717C>G	p.His239Gln	p.H239Q	ENST00000273854	NM_004439.5	239	caC/caG																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143324164	143324164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			209	12	318	1	ENST00000262992.4:c.299C>A	p.Ser100Tyr	p.S100Y	ENST00000262992	NM_001101669.1	100	tCt/tAt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35861028	35861028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			303	30	485	0	ENST00000303115.3:c.157C>A	p.His53Asn	p.H53N	ENST00000303115	NM_002185.3	53	Cac/Aac																																																																															
RAD50	10111	MSKCC	GRCh37	5	131930625	131930625	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			206	14	423	0	ENST00000265335.6:c.1858G>C	p.Glu620Gln	p.E620Q	ENST00000265335		620	Gag/Cag																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197328	26197328	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			586	61	869	0	ENST00000356476.2:c.151G>C	p.Glu51Gln	p.E51Q	ENST00000356476		51	Gag/Cag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675925	30675925	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			511	31	834	2	ENST00000376406.3:c.2431G>C	p.Asp811His	p.D811H	ENST00000376406	NM_014641.2	811	Gat/Cat																																																																															
ESR1	2099	MSKCC	GRCh37	6	152201873	152201873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	29	449	0	ENST00000206249.3:c.727C>A	p.Arg243Ser	p.R243S	ENST00000206249	NM_000125.3	243	Cgt/Agt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683674	162683674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	33	654	0	ENST00000366898.1:c.295C>T	p.Pro99Ser	p.P99S	ENST00000366898	NM_004562.2	99	Ccc/Tcc																																																																															
HGF	3082	MSKCC	GRCh37	7	81336653	81336653	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			121	17	393	0	ENST00000222390.5:c.1569G>C	p.Leu523Phe	p.L523F	ENST00000222390	NM_000601.4	523	ttG/ttC																																																																															
PREX2	80243	MSKCC	GRCh37	8	68989635	68989635	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			287	18	480	0	ENST00000288368.4:c.1573G>C	p.Asp525His	p.D525H	ENST00000288368	NM_024870.2	525	Gat/Cat																																																																															
MYC	4609	MSKCC	GRCh37	8	128750872	128750872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	38	745	0	ENST00000377970.2:c.409G>A	p.Glu137Lys	p.E137K	ENST00000377970	NM_002467.4	137	Gag/Aag																																																																															
AGO2	27161	MSKCC	GRCh37	8	141567256	141567256	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			446	52	803	0	ENST00000220592.5:c.958C>G	p.Leu320Val	p.L320V	ENST00000220592	NM_012154.3	320	Ctg/Gtg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045709	47045709	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			456	51	1236	0	ENST00000329236.7:c.2356C>G	p.Arg786Gly	p.R786G	ENST00000329236	NM_001204466.1	786	Cgg/Ggg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0053341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	359	829	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	322	302	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0053341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	139	544	2	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56787260	56787260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	44	622	1	ENST00000337432.4:c.746G>A	p.Arg249His	p.R249H	ENST00000337432	NM_058216.2	249	cGt/cAt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437542	110437542	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	245	704	0	ENST00000375856.3:c.859A>T	p.Ile287Phe	p.I287F	ENST00000375856	NM_003749.2	287	Atc/Ttc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459435	50459435	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	79	326	0	ENST00000331340.3:c.724G>C	p.Glu242Gln	p.E242Q	ENST00000331340	NM_006060.4	242	Gaa/Caa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0053342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	102	508	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0053342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	215	731	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0053342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	78	392	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112176027	112176030	+	frameshift_variant	Frame_Shift_Del	DEL	TTAT	TTAT	-			P-0053342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	78	346	0	ENST00000257430.4:c.4738_4741del	p.Ile1580LeufsTer69	p.I1580Lfs*69	ENST00000257430	NM_000038.5	1579	aTTATt/at																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962960	2962960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	199	907	0	ENST00000396946.4:c.1948C>T	p.Arg650Trp	p.R650W	ENST00000396946	NM_032415.4	650	Cgg/Tgg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015056	37015056	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	152	711	0	ENST00000358127.4:c.348C>A	p.Asp116Glu	p.D116E	ENST00000358127	NM_001280556.1	116	gaC/gaA																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44910953	44910953	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0053342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	84	155	0	ENST00000377967.4:c.655-1G>A		p.X219_splice	ENST00000377967	NM_021140.2	219																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0053347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	161	459	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
STK11	6794	MSKCC	GRCh37	19	1222982	1222982	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0053347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	160	628	0	ENST00000326873.7:c.921-2A>C		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																																
TGFBR2	7048	MSKCC	GRCh37	3	30715613	30715613	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	64	296	0	ENST00000359013.4:c.1346A>T	p.Tyr449Phe	p.Y449F	ENST00000359013	NM_001024847.2	449	tAc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0053349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	188	764	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646264	3646264	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	59	616	0	ENST00000294008.3:c.1814G>T	p.Ser605Ile	p.S605I	ENST00000294008	NM_032444.2	605	aGc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1314	102	1048	1	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0053363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	23	298	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198299711	198299711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	79	455	0	ENST00000335508.6:c.13G>A	p.Ala5Thr	p.A5T	ENST00000335508	NM_012433.2	5	Gcc/Acc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499483	89499483	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0053363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	49	433	0	ENST00000336596.2:c.2655del	p.Gly886AlafsTer3	p.G886Afs*3	ENST00000336596	NM_005233.5	885	Ccc/cc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564689	86564704	+	frameshift_variant	Frame_Shift_Del	DEL	CCTTACCTGCCCCCTT	CCTTACCTGCCCCCTT	-			P-0053363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	111	926	0	ENST00000274376.6:c.421_436del	p.Pro141TrpfsTer28	p.P141Wfs*28	ENST00000274376	NM_002890.2	141	CCTTACCTGCCCCCTTtg/tg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101908843	101908854	+	inframe_deletion	In_Frame_Del	DEL	GCAATGGGCTTA	GCAATGGGCTTA	-			P-0053363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	42	554	0	ENST00000374994.4:c.1208_1219del	p.Ala403_Leu406del	p.A403_L406del	ENST00000374994	NM_004612.2	403	GCAATGGGCTTA/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0053373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	67	505	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0053373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	203	1225	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602340	10602340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1181	111	1395	1	ENST00000171111.5:c.1238G>T	p.Arg413Leu	p.R413L	ENST00000171111	NM_203500.1	413	cGt/cTt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109809	115109809	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	64	951	0	ENST00000257566.3:c.2069C>G	p.Ser690Cys	p.S690C	ENST00000257566	NM_016569.3	690	tCt/tGt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615705	1615705	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1117	104	1234	0	ENST00000344749.5:c.1566G>C	p.Lys522Asn	p.K522N	ENST00000344749	NM_001136139.2	522	aaG/aaC																																																																															
ACVR1	90	MSKCC	GRCh37	2	158622447	158622447	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	41	365	0	ENST00000263640.3:c.1052G>C	p.Cys351Ser	p.C351S	ENST00000263640	NM_001105.4	351	tGc/tCc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165126	47165126	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	54	231	0	ENST00000409792.3:c.1000C>T	p.Gln334Ter	p.Q334*	ENST00000409792	NM_014159.6	334	Caa/Taa																																																																															
TP63	8626	MSKCC	GRCh37	3	189587141	189587141	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	50	429	0	ENST00000264731.3:c.1158G>C	p.Gln386His	p.Q386H	ENST00000264731	NM_003722.4	386	caG/caC																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553188	106553188	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	78	839	0	ENST00000369096.4:c.1153G>T	p.Gly385Cys	p.G385C	ENST00000369096	NM_001198.3	385	Ggt/Tgt																																																																															
BRAF	673	MSKCC	GRCh37	7	140482954	140482954	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	66	639	0	ENST00000288602.6:c.1181C>A	p.Ser394Ter	p.S394*	ENST00000288602	NM_004333.4	394	tCa/tAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845597	151845597	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	67	881	0	ENST00000262189.6:c.13415G>C	p.Ser4472Thr	p.S4472T	ENST00000262189	NM_170606.2	4472	aGt/aCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0053382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	94	799	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0053382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	50	406	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																															
MITF	4286	MSKCC	GRCh37	3	69928346	69928346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	27	674	0	ENST00000352241.4:c.166C>T	p.Arg56Cys	p.R56C	ENST00000352241	NM_198159.2	56	Cgc/Tgc																																																																															
CDH1	999	MSKCC	GRCh37	16	68844097	68844097	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0053386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	49	574	0	ENST00000261769.5:c.688-3C>T		p.X230_splice	ENST00000261769	NM_004360.3	230																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118375806	118375806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	66	642	1	ENST00000534358.1:c.9199G>A	p.Val3067Ile	p.V3067I	ENST00000534358	NM_005933.3	3067	Gtc/Atc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229530	98229530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	102	558	0	ENST00000331920.6:c.2428G>T	p.Ala810Ser	p.A810S	ENST00000331920	NM_000264.3	810	Gca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0053388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	218	778	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0053388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	218	843	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0053388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	99	239	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30325733	30325733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	69	246	0	ENST00000322652.5:c.1931G>T	p.Gly644Val	p.G644V	ENST00000322652	NM_015355.2	644	gGa/gTa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591057	67591058	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAGCAGGCAGCTGAGTATCGAGAAATTGACAAACGTATGAAC			P-0053388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	81	282	0	ENST00000274335.5:c.1652_1693dup	p.Lys551_Asn564dup	p.K551_N564dup	ENST00000274335		551	-/AAGCAGGCAGCTGAGTATCGAGAAATTGACAAACGTATGAAC																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39311610	39311610	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0053399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	77	552	1	ENST00000373001.3:c.1048+1G>A		p.X350_splice	ENST00000373001	NM_022157.3	350																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0053399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	145	652	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28913376	28913376	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	215	788	0	ENST00000282397.4:c.2417T>C	p.Leu806Ser	p.L806S	ENST00000282397	NM_002019.4	806	tTg/tCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	84	828	0	ENST00000269305.4:c.711G>C	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atC																																																																															
APC	324	MSKCC	GRCh37	5	112173495	112173496	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0053399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	77	491	0	ENST00000257430.4:c.2205dup	p.Lys736GlufsTer20	p.K736Efs*20	ENST00000257430	NM_000038.5	735	gcg/gcGg																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0053399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	68	473	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971292	13971292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	116	665	0	ENST00000405192.2:c.637C>T	p.Arg213Cys	p.R213C	ENST00000405192	NM_001163147.1	213	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0053401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	197	454	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619109	37619109	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	217	660	0	ENST00000447079.4:c.785A>G	p.Tyr262Cys	p.Y262C	ENST00000447079	NM_015083.1	262	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0053406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	234	956	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0053432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	148	787	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0053432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	89	889	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223334	2223334	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757410464		P-0053432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	67	920	0	ENST00000326181.6:c.946C>T	p.Arg316Cys	p.R316C	ENST00000326181	NM_032271.2	316	Cgc/Tgc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45871913	45871913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	186	750	3	ENST00000391945.4:c.335G>A	p.Arg112His	p.R112H	ENST00000391945	NM_000400.3	112	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711988	89711988	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0053432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	53	414	0	ENST00000371953.3:c.606del	p.Ile203PhefsTer18	p.I203Ffs*18	ENST00000371953	NM_000314.4	202	acT/ac																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045729	26045729	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	53	597	1	ENST00000540144.1:c.91C>A	p.Pro31Thr	p.P31T	ENST00000540144	NM_003531.2	31	Ccg/Acg																																																																															
BRAF	673	MSKCC	GRCh37	7	140482949	140482949	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	92	645	0	ENST00000288602.6:c.1186A>T	p.Thr396Ser	p.T396S	ENST00000288602	NM_004333.4	396	Aca/Tca																																																																															
PAX5	5079	MSKCC	GRCh37	9	36840603	36840603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	139	1155	2	ENST00000358127.4:c.1130G>A	p.Arg377Gln	p.R377Q	ENST00000358127	NM_001280556.1	377	cGa/cAa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044941	47044941	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	205	712	0	ENST00000329236.7:c.2034del	p.Trp678CysfsTer46	p.W678Cfs*46	ENST00000329236	NM_001204466.1	678	tGg/tg																																																																															
ATM	472	MSKCC	GRCh37	11	108123635	108123635	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	77	282	0	ENST00000278616.4:c.1894G>T	p.Glu632Ter	p.E632*	ENST00000278616	NM_000051.3	632	Gaa/Taa																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134628	41134628	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0053433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	84	596	0	ENST00000379561.5:c.1000G>T	p.Glu334Ter	p.E334*	ENST00000379561	NM_002015.3	334	Gaa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29556460	29556479	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTTTTTTGACTCCCAAGG	AAGTTTTTTGACTCCCAAGG	-			P-0053433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	60	345	0	ENST00000358273.4:c.2828_2847del	p.Lys943ThrfsTer6	p.K943Tfs*6	ENST00000358273	NM_001042492.2	943	AAGTTTTTTGACTCCCAAGGa/a																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52723457	52723457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	105	766	0	ENST00000322088.6:c.1318G>A	p.Asp440Asn	p.D440N	ENST00000322088	NM_014225.5	440	Gat/Aat																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966955	25966955	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	185	1049	0	ENST00000435504.4:c.2251C>A	p.Gln751Lys	p.Q751K	ENST00000435504		751	Cag/Aag																																																																															
MSH2	4436	MSKCC	GRCh37	2	47710041	47710041	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	46	205	0	ENST00000233146.2:c.2758A>C	p.Asn920His	p.N920H	ENST00000233146	NM_000251.2	920	Aat/Cat																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96931081	96931094	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCCCGCCGGGCA	GCGCCCGCCGGGCA	-			P-0053433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	26	140	0	ENST00000258439.3:c.26_39del	p.Leu9ProfsTer17	p.L9Pfs*17	ENST00000258439	NM_001193304.2	9	cTGCCCGGCGGGCGC/c																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790062	40790062	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	180	1065	0	ENST00000373198.4:c.2669T>A	p.Val890Glu	p.V890E	ENST00000373198	NM_133170.3	890	gTg/gAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306638	41306638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	153	1170	0	ENST00000373198.4:c.1021G>T	p.Asp341Tyr	p.D341Y	ENST00000373198	NM_133170.3	341	Gac/Tac																																																																															
KDR	3791	MSKCC	GRCh37	4	55946137	55946137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	101	519	2	ENST00000263923.4:c.4042G>T	p.Gly1348Trp	p.G1348W	ENST00000263923	NM_002253.2	1348	Ggg/Tgg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143159063	143159063	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	63	278	0	ENST00000262992.4:c.790A>G	p.Ile264Val	p.I264V	ENST00000262992	NM_001101669.1	264	Att/Gtt																																																																															
ATRX	546	MSKCC	GRCh37	X	76920158	76920158	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	110	268	0	ENST00000373344.5:c.3919A>G	p.Asn1307Asp	p.N1307D	ENST00000373344	NM_000489.3	1307	Aat/Gat																																																																															
SDHA	6389	MSKCC	GRCh37	5	236616	236616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	21	584	1	ENST00000264932.6:c.1334C>T	p.Ser445Leu	p.S445L	ENST00000264932	NM_004168.2	445	tCg/tTg																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22127177	22127177	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0053436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	50	731	0	ENST00000215832.6:c.951C>G	p.Tyr317Ter	p.Y317*	ENST00000215832	NM_002745.4	317	taC/taG																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636860	176636860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	91	736	0	ENST00000439151.2:c.1460C>A	p.Ala487Glu	p.A487E	ENST00000439151	NM_022455.4	487	gCa/gAa																																																																															
MET	4233	MSKCC	GRCh37	7	116411875	116411887	+	intron_variant	Intron	DEL	CAAGCTCTTTCTT	CAAGCTCTTTCTT	-			P-0053436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	227	1050	0	ENST00000397752.3:c.2888-28_2888-16del		p.*963*	ENST00000397752	NM_000245.2																																																																																	
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0053437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	443	618	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0053437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	942	945	4	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0053437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	87	441	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0053437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	408	484	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903753	114903754	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0053437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	571	697	2	ENST00000543371.1:c.758dup	p.His255ProfsTer73	p.H255Pfs*73	ENST00000543371	NM_001198531.1	253	atc/aTtc																																																																															
ATRX	546	MSKCC	GRCh37	X	76952155	76952155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	210	660	0	ENST00000373344.5:c.280G>T	p.Asp94Tyr	p.D94Y	ENST00000373344	NM_000489.3	94	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0053462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	194	465	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0053462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	351	678	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78704418	78704418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	92	511	0	ENST00000306801.3:c.566C>T	p.Pro189Leu	p.P189L	ENST00000306801	NM_020761.2	189	cCg/cTg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47641445	47641445	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	79	545	0	ENST00000233146.2:c.830T>C	p.Leu277Ser	p.L277S	ENST00000233146	NM_000251.2	277	tTa/tCa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104740	69104740	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	93	586	3	ENST00000288368.4:c.4584G>T	p.Met1528Ile	p.M1528I	ENST00000288368	NM_024870.2	1528	atG/atT																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948635	71948635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	203	933	0	ENST00000298229.2:c.3347G>T	p.Gly1116Val	p.G1116V	ENST00000298229	NM_001567.3	1116	gGg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420799	49420799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	89	681	0	ENST00000301067.7:c.14950G>A	p.Gly4984Arg	p.G4984R	ENST00000301067	NM_003482.3	4984	Gga/Aga																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861858	57861858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	234	723	1	ENST00000228682.2:c.1159C>T	p.His387Tyr	p.H387Y	ENST00000228682	NM_005269.2	387	Cat/Tat																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133627	55133627	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0053462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	153	454	0	ENST00000257290.5:c.931G>T	p.Glu311Ter	p.E311*	ENST00000257290	NM_006206.4	311	Gag/Tag																																																																															
KDR	3791	MSKCC	GRCh37	4	55973977	55973977	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	172	638	0	ENST00000263923.4:c.1339G>T	p.Val447Phe	p.V447F	ENST00000263923	NM_002253.2	447	Gtc/Ttc																																																																															
KDR	3791	MSKCC	GRCh37	4	55979513	55979513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	84	592	0	ENST00000263923.4:c.934G>T	p.Gly312Trp	p.G312W	ENST00000263923	NM_002253.2	312	Ggg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974785	21974826	+	start_lost,inframe_deletion	Translation_Start_Site	DEL	GTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCAT	GTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCAT	-			P-0053462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	9	178	0	ENST00000304494.5:c.1_42del	p.MetGluProAlaAlaGlySerSerMetGluProSerAlaAsp1_?14	p.MEPAAGSSMEPSAD1_?14	ENST00000304494	NM_000077.4	1	ATGGAGCCGGCGGCGGGGAGCAGCATGGAGCCTTCGGCTGAC/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0053515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	744	910	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	602	627	0	ENST00000369535.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caT																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027541	48027541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	285	338	0	ENST00000234420.5:c.2419G>A	p.Glu807Lys	p.E807K	ENST00000234420	NM_000179.2	807	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0053515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	271	550	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0053515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	161	250	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7978933	7978933	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	167	612	0	ENST00000319144.4:c.1634T>G	p.Leu545Arg	p.L545R	ENST00000319144	NM_001139.2	545	cTc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0052483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	42	840	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155046	55155046	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	34	502	0	ENST00000257290.5:c.2755G>C	p.Asp919His	p.D919H	ENST00000257290	NM_006206.4	919	Gac/Cac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0053227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	57	394	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0053227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	134	448	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576883	7576883	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0053227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	159	657	0	ENST00000269305.4:c.963del	p.Lys321AsnfsTer24	p.K321Nfs*24	ENST00000269305	NM_001126112.2	321	aaA/aa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968251	134968251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	91	641	1	ENST00000398015.3:c.2764G>A	p.Ala922Thr	p.A922T	ENST00000398015	NM_004441.4	922	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112111364	112111364	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0053227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	61	175	0	ENST00000257430.4:c.465del	p.Asp156ThrfsTer14	p.D156Tfs*14	ENST00000257430	NM_000038.5	154	gAa/ga																																																																															
B2M	567	MSKCC	GRCh37	15	45007633	45007633	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0053227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	68	229	0	ENST00000558401.1:c.81del	p.Gln28ArgfsTer16	p.Q28Rfs*16	ENST00000558401	NM_004048.2	27	aTt/at																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075175	16075176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0053227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	137	387	0	ENST00000268712.3:c.376dup	p.Val126GlyfsTer19	p.V126Gfs*19	ENST00000268712	NM_006311.3	126	gtt/gGtt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168910	32168910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	263	940	1	ENST00000375023.3:c.4123G>A	p.Asp1375Asn	p.D1375N	ENST00000375023	NM_004557.3	1375	Gac/Aac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101212	27101213	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	CT			P-0053232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	230	799	2	ENST00000324856.7:c.4494_4495delinsCT	p.Trp1498_Gln1499delinsCysTer	p.W1498_Q1499delinsC*	ENST00000324856	NM_006015.4	1498	tgGCag/tgCTag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265532	152265532	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	280	654	0	ENST00000206249.3:c.985T>G	p.Ser329Ala	p.S329A	ENST00000206249	NM_000125.3	329	Tcc/Gcc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53231148	53231148	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	54	518	0	ENST00000375401.3:c.1754G>C	p.Arg585Pro	p.R585P	ENST00000375401	NM_004187.3	585	cGc/cCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0053305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	31	667	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40441468	40441468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	30	1051	0	ENST00000345506.4:c.39C>A	p.Asp13Glu	p.D13E	ENST00000345506	NM_003152.3	13	gaC/gaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0053309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	43	560	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0053309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	40	846	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112760193	112760193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	28	476	2	ENST00000369452.4:c.862C>T	p.Arg288Cys	p.R288C	ENST00000369452	NM_007373.3	288	Cgt/Tgt																																																																															
CIC	23152	MSKCC	GRCh37	19	42793214	42793214	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	62	1116	1	ENST00000575354.2:c.1106A>T	p.Asp369Val	p.D369V	ENST00000575354	NM_015125.3	369	gAc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0053238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	263	371	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692893	89692893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	120	403	0	ENST00000371953.3:c.377C>A	p.Ala126Asp	p.A126D	ENST00000371953	NM_000314.4	126	gCt/gAt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134977949	134977949	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56186270		P-0053238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	119	538	0	ENST00000398015.3:c.2942C>T	p.Thr981Met	p.T981M	ENST00000398015	NM_004441.4	981	aCg/aTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685304	89685305	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0053238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	32	260	0	ENST00000371953.3:c.200dup	p.Tyr68IlefsTer6	p.Y68Ifs*6	ENST00000371953	NM_000314.4	67	ata/aTta																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134644661	134644661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	254	474	1	ENST00000398015.3:c.62C>T	p.Thr21Met	p.T21M	ENST00000398015	NM_004441.4	21	aCg/aTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81922843	81922843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	111	596	2	ENST00000359376.3:c.832C>T	p.Arg278Cys	p.R278C	ENST00000359376	NM_002661.3	278	Cgt/Tgt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0053241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	10	337	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0053241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	264	500	2	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610109	10610109	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	276	872	0	ENST00000171111.5:c.601C>T	p.Gln201Ter	p.Q201*	ENST00000171111	NM_203500.1	201	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1219412	1219413	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0053241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	169	436	1	ENST00000326873.7:c.464_464+1delinsTT		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0053248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	46	251	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	42	684	0	ENST00000269305.4:c.737T>A	p.Met246Lys	p.M246K	ENST00000269305	NM_001126112.2	246	aTg/aAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579361	7579362	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0053272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	567	559	0	ENST00000269305.4:c.325_326del	p.Phe109ProfsTer39	p.F109Pfs*39	ENST00000269305	NM_001126112.2	109	TTc/c																																																																															
MALT1	10892	MSKCC	GRCh37	18	56413025	56413025	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0053272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	170	215	2	ENST00000348428.3:c.2037+2T>C		p.X679_splice	ENST00000348428	NM_006785.3	679																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151873406	151873407	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0053272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	168	267	0	ENST00000262189.6:c.9130_9131dup	p.Pro3045GlyfsTer5	p.P3045Gfs*5	ENST00000262189	NM_170606.2	3044	agg/agAGg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164509	36164509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	16	290	0	ENST00000300305.3:c.1366G>A	p.Glu456Lys	p.E456K	ENST00000300305		456	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	300	827	0	ENST00000269305.4:c.403delT	p.Cys135AlafsTer35	p.C135Afs*35	ENST00000269305	NM_001126112.2	135	Tgc/gc																																																																															
ATRX	546	MSKCC	GRCh37	X	76890169	76890169	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	153	327	0	ENST00000373344.5:c.4725C>A	p.Cys1575Ter	p.C1575*	ENST00000373344	NM_000489.3	1575	tgC/tgA																																																																															
MTOR	2475	MSKCC	GRCh37	1	11169377	11169377	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519916		P-0052613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			511	140	461	0	ENST00000361445.4:c.7498A>T	p.Ile2500Phe	p.I2500F	ENST00000361445	NM_004958.3	2500	Att/Ttt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115830	8115837	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGGCCG	CCCGGCCG	-			P-0052613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			609	116	560	0	ENST00000346208.3:c.1179_1186delGGCCGCCC	p.Ala394LeufsTer110	p.A394Lfs*110	ENST00000346208		392	aaCCCGGCCGcc/aacc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3808932	3808933	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0052613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			635	145	565	1	ENST00000262367.5:c.3291_3292delinsAG	p.Leu1098Val	p.L1098V	ENST00000262367	NM_004380.2	1097	acCCta/acAGta																																																																															
EP300	2033	MSKCC	GRCh37	22	41545922	41545922	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1029166382		P-0052613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			664	121	665	1	ENST00000263253.7:c.2537C>T	p.Pro846Leu	p.P846L	ENST00000263253	NM_001429.3	846	cCc/cTc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170009677	170009677	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			477	97	360	0	ENST00000295797.4:c.1239C>A	p.Phe413Leu	p.F413L	ENST00000295797	NM_002740.5	413	ttC/ttA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879670	151879670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	56	208	0	ENST00000262189.6:c.5275C>T	p.Gln1759Ter	p.Q1759*	ENST00000262189	NM_170606.2	1759	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945601	151945606	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	CGCCAC	CGCCAC	-			P-0052613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			408	91	308	0	ENST00000262189.6:c.1913_1918del	p.Cys638_Glu640delinsTer	p.C638_E640delins*	ENST00000262189	NM_170606.2	638	tGTGGCGaa/taa																																																																															
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0053140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	236	309	0	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat																																																																															
BARD1	580	MSKCC	GRCh37	2	215645983	215645984	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0053140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	270	457	0	ENST00000260947.4:c.614dup	p.Gln206AlafsTer8	p.Q206Afs*8	ENST00000260947	NM_000465.2	205	aag/aaAg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16245923	16245923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	135	321	0	ENST00000375759.3:c.1546A>G	p.Thr516Ala	p.T516A	ENST00000375759	NM_015001.2	516	Aca/Gca																																																																															
JUN	3725	MSKCC	GRCh37	1	59248442	59248442	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0053140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	191	535	0	ENST00000371222.2:c.301A>T	p.Lys101Ter	p.K101*	ENST00000371222	NM_002228.3	101	Aag/Tag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138830	64138830	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	216	482	0	ENST00000334205.4:c.2197C>T	p.Gln733Ter	p.Q733*	ENST00000334205	NM_003942.2	733	Cag/Tag																																																																															
RB1	5925	MSKCC	GRCh37	13	49033926	49033946	+	inframe_deletion	In_Frame_Del	DEL	TGCAGAATGAGTATGAACTCA	TGCAGAATGAGTATGAACTCA	-			P-0053140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	139	346	1	ENST00000267163.4:c.2065_2085del	p.Gln689_Met695del	p.Q689_M695del	ENST00000267163	NM_000321.2	688	cTGCAGAATGAGTATGAACTCAtg/ctg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396459	30396459	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	281	253	0	ENST00000331968.5:c.260A>T	p.Gln87Leu	p.Q87L	ENST00000331968	NM_002742.2	87	cAg/cTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420210	88420210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	159	423	0	ENST00000360948.2:c.2476G>T	p.Ala826Ser	p.A826S	ENST00000360948	NM_001012338.2	826	Gct/Tct																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78857746	78857746	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	234	678	0	ENST00000306801.3:c.1816A>T	p.Ser606Cys	p.S606C	ENST00000306801	NM_020761.2	606	Agc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210740	36210740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	480	760	0	ENST00000222270.7:c.491C>T	p.Pro164Leu	p.P164L	ENST00000222270	NM_014727.1	164	cCt/cTt																																																																															
ALK	238	MSKCC	GRCh37	2	30143180	30143180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	167	349	0	ENST00000389048.3:c.346G>A	p.Ala116Thr	p.A116T	ENST00000389048	NM_004304.4	116	Gcc/Acc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212286817	212286817	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	121	329	0	ENST00000342788.4:c.2879A>C	p.Asp960Ala	p.D960A	ENST00000342788	NM_005235.2	960	gAt/gCt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225360653	225360653	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	72	294	0	ENST00000264414.4:c.1738G>C	p.Ala580Pro	p.A580P	ENST00000264414	NM_003590.4	580	Gca/Cca																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138382815	138382815	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	315	403	0	ENST00000289153.2:c.2729T>G	p.Val910Gly	p.V910G	ENST00000289153	NM_006219.2	910	gTa/gGa																																																																															
KDR	3791	MSKCC	GRCh37	4	55964965	55964965	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	91	241	0	ENST00000263923.4:c.2272C>T	p.Gln758Ter	p.Q758*	ENST00000263923	NM_002253.2	758	Cag/Tag																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519385	137519385	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	96	264	0	ENST00000367739.4:c.1253G>T	p.Cys418Phe	p.C418F	ENST00000367739	NM_000416.2	418	tGt/tTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913288		P-0053142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	126	339	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																															
IRF4	3662	MSKCC	GRCh37	6	407575	407575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	105	272	0	ENST00000380956.4:c.1333C>T	p.Arg445Cys	p.R445C	ENST00000380956	NM_001195286.1	445	Cgc/Tgc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553602	106553602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	121	394	1	ENST00000369096.4:c.1567G>A	p.Ala523Thr	p.A523T	ENST00000369096	NM_001198.3	523	Gcc/Acc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061215	38061238	+	inframe_deletion	In_Frame_Del	DEL	GCAGCCGTTCTCGAACATGTTGCC	GCAGCCGTTCTCGAACATGTTGCC	-			P-0053142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	90	587	0	ENST00000250448.2:c.751_774del	p.Gly251_Cys258del	p.G251_C258del	ENST00000250448	NM_004496.3	251	GGCAACATGTTCGAGAACGGCTGC/-																																																																															
SPOP	8405	MSKCC	GRCh37	17	47699430	47699430	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0053142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	87	212	0	ENST00000347630.2:c.79-1G>A		p.X27_splice	ENST00000347630	NM_001007230.1	27																																																																																
ATM	472	MSKCC	GRCh37	11	108114677	108114678	+	splice_acceptor_variant,intron_variant	Splice_Site	DNP	AA	AA	TT			P-0053143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	105	242	1	ENST00000278616.4:c.497-3_497-2inv		p.X166_splice	ENST00000278616	NM_000051.3	166																																																																																
ATM	472	MSKCC	GRCh37	11	108114722	108114722	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	203	397	2	ENST00000278616.4:c.539A>G	p.Gln180Arg	p.Q180R	ENST00000278616	NM_000051.3	180	cAa/cGa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118352724	118352724	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	85	483	0	ENST00000534358.1:c.3929C>G	p.Pro1310Arg	p.P1310R	ENST00000534358	NM_005933.3	1310	cCt/cGt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38978685	38978685	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0053143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	75	319	1	ENST00000357387.3:c.821A>C	p.Lys274Thr	p.K274T	ENST00000357387	NM_152756.3	274	aAa/aCa																																																																															
ATRX	546	MSKCC	GRCh37	X	76939650	76939650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	132	556	0	ENST00000373344.5:c.1098G>A	p.Met366Ile	p.M366I	ENST00000373344	NM_000489.3	366	atG/atA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0053144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	77	439	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0053144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	126	871	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971203	21971204	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0053144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	53	409	0	ENST00000304494.5:c.154dup	p.Met52AsnfsTer68	p.M52Nfs*68	ENST00000304494	NM_000077.4	52	atg/aAtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0053148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	72	520	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913396		P-0053148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	19	386	0	ENST00000349496.5:c.95A>G	p.Asp32Gly	p.D32G	ENST00000349496	NM_001904.3	32	gAc/gGc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987215	2987215	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	18	492	0	ENST00000396946.4:c.214C>T	p.Arg72Ter	p.R72*	ENST00000396946	NM_032415.4	72	Cga/Tga																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73774738	73774738	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	33	245	0	ENST00000254810.4:c.349A>G	p.Arg117Gly	p.R117G	ENST00000254810	NM_005324.3	117	Aga/Gga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0053159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	28	342	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0053159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	30	333	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457264	67457264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	69	672	1	ENST00000327367.4:c.238C>T	p.Arg80Trp	p.R80W	ENST00000327367	NM_005902.3	80	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	29	356	1	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578412	7578412	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	55	689	0	ENST00000269305.4:c.518T>G	p.Val173Gly	p.V173G	ENST00000269305	NM_001126112.2	173	gTg/gGg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022721	12022722	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0053159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	17	447	0	ENST00000396373.4:c.829_830del	p.Leu277AspfsTer22	p.L277Dfs*22	ENST00000396373	NM_001987.4	276	cCT/c																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948674	71948674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	120	689	0	ENST00000298229.2:c.3386C>T	p.Thr1129Met	p.T1129M	ENST00000298229	NM_001567.3	1129	aCg/aTg																																																																															
PGR	5241	MSKCC	GRCh37	11	100933334	100933334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	36	408	0	ENST00000325455.5:c.2056C>T	p.Pro686Ser	p.P686S	ENST00000325455	NM_001202474.3	686	Cca/Tca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0053162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	35	296	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857476	9857476	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145602289		P-0053162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	50	362	0	ENST00000330684.3:c.3925C>T	p.Arg1309Trp	p.R1309W	ENST00000330684	NM_001134407.1	1309	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0053162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	73	426	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	35	207	0	ENST00000342988.3:c.1255G>C	p.Gly419Arg	p.G419R	ENST00000342988	NM_005359.5	419	Ggg/Cgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211862	36211862	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	110	601	0	ENST00000222270.7:c.1613G>A	p.Arg538His	p.R538H	ENST00000222270	NM_014727.1	538	cGt/cAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0053162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	29	151	0				ENST00000310581	NM_198253.2																																																																																	
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0053162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	20	252	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174378	112174379	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0053162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	18	221	0	ENST00000257430.4:c.3090dup	p.Tyr1031IlefsTer4	p.Y1031Ifs*4	ENST00000257430	NM_000038.5	1029	-/A																																																																															
APC	324	MSKCC	GRCh37	5	112175525	112175525	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	39	245	0	ENST00000257430.4:c.4235del	p.Gly1412GlufsTer3	p.G1412Efs*3	ENST00000257430	NM_000038.5	1412	Gga/ga																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0053162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	13	245	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0053162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	10	296	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0053170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	150	453	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30133269	30133269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	58	730	1	ENST00000263025.4:c.229G>A	p.Glu77Lys	p.E77K	ENST00000263025	NM_002746.2	77	Gaa/Aaa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164863	36164863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	113	860	1	ENST00000300305.3:c.1012G>A	p.Ala338Thr	p.A338T	ENST00000300305		338	Gcg/Acg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68939479	68939479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778971988		P-0053170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	25	400	1	ENST00000288368.4:c.464G>A	p.Arg155Gln	p.R155Q	ENST00000288368	NM_024870.2	155	cGg/cAg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856541	111856541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	28	230	0	ENST00000341259.2:c.592G>A	p.Glu198Lys	p.E198K	ENST00000341259	NM_005475.2	198	Gag/Aag																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40451798	40451798	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	182	878	0	ENST00000345506.4:c.580C>A	p.Pro194Thr	p.P194T	ENST00000345506	NM_003152.3	194	Ccc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0053171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	28	389	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214591	5214591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	67	692	1	ENST00000357368.4:c.4475G>A	p.Arg1492Gln	p.R1492Q	ENST00000357368	NM_002850.3	1492	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604712	48604713	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0053171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	26	383	0	ENST00000342988.3:c.1534_1535delinsAT	p.Asp512Ile	p.D512I	ENST00000342988	NM_005359.5	512	GAt/ATt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	467	856	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664804	138664804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	84	199	0	ENST00000330315.3:c.761C>T	p.Ser254Leu	p.S254L	ENST00000330315	NM_023067.3	254	tCg/tTg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742515	17742515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	198	641	0	ENST00000250003.3:c.697G>A	p.Glu233Lys	p.E233K	ENST00000250003	NM_002478.4	233	Gag/Aag																																																																															
TP63	8626	MSKCC	GRCh37	3	189586455	189586455	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	121	330	0	ENST00000264731.3:c.1079G>C	p.Arg360Thr	p.R360T	ENST00000264731	NM_003722.4	360	aGa/aCa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416417	49416417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	147	511	0	ENST00000301067.7:c.16294C>T	p.Arg5432Trp	p.R5432W	ENST00000301067	NM_003482.3	5432	Cgg/Tgg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86665655	86665655	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	49	171	0	ENST00000274376.6:c.1636C>T	p.Gln546Ter	p.Q546*	ENST00000274376	NM_002890.2	546	Cag/Tag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129227	152129227	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	199	683	0	ENST00000206249.3:c.180C>G	p.Tyr60Ter	p.Y60*	ENST00000206249	NM_000125.3	60	taC/taG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916660	178916660	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	104	329	0	ENST00000263967.3:c.47T>C	p.Met16Thr	p.M16T	ENST00000263967	NM_006218.2	16	aTg/aCg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808562	1808562	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377402598		P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	235	935	0	ENST00000260795.2:c.2175G>A	p.Met725Ile	p.M725I	ENST00000260795		725	atG/atA																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64289237	64289961	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	GTAAGTAATGGATTCTCTTTTCATTTGTACTCTCTTTCATTTCCTTGTTGAGTGTCAGTGAGTTTAATAGTCTAATAGCCCATTTAATCATTATGATTATTTTTTGAGATAGTATTAAAACCAGGAAATCAAGATCTTACATTCTTTTTTGCATTTCATGCAGTTGCTCATATTACTAAGATTCTAATCCAACAAGAGTTTTTGAATTATTGTTTTGCTTTAAATACTTGATTGAATATGTTGGTTATTTTGTATTTTTATTGAGGTATAATTAAGATACATTTAAAGATACAATAAAATGCACAGGTCTCCAAAGGAGACCAGTTGACAATAACAGCCAAATTAACCATCCAATACAACACATAGAATATTTTGAGTGCTGTAGAACATGCCTTTGTGGCTTTTGTAGTCATCTTCCCTGCTACCAGAGGCAACTTCTGACTTCACTATAAATTAGTTTTGTCTTTTCGTGGACTTACGTGTAAATGGATTTGTGAGTCGACTGTTGTAACCAATACTCAAACGAAGATATAAAGAAAATTAACTTTTTATGATTTTTTCCATTTACACTGATGTGCCTGTTCATATTCCTTTCTGCATCAGGTCACAGCCTAATTAATCAAAAGATAAATTGCCACAAGAGAGGTGATGGTTGTCTATAAGACACTAAATATTACTGTAGGGGGCTTTTGCCTTGTTTCATTTTTTTTTTTTTTTCCTCCCAG	GTAAGTAATGGATTCTCTTTTCATTTGTACTCTCTTTCATTTCCTTGTTGAGTGTCAGTGAGTTTAATAGTCTAATAGCCCATTTAATCATTATGATTATTTTTTGAGATAGTATTAAAACCAGGAAATCAAGATCTTACATTCTTTTTTGCATTTCATGCAGTTGCTCATATTACTAAGATTCTAATCCAACAAGAGTTTTTGAATTATTGTTTTGCTTTAAATACTTGATTGAATATGTTGGTTATTTTGTATTTTTATTGAGGTATAATTAAGATACATTTAAAGATACAATAAAATGCACAGGTCTCCAAAGGAGACCAGTTGACAATAACAGCCAAATTAACCATCCAATACAACACATAGAATATTTTGAGTGCTGTAGAACATGCCTTTGTGGCTTTTGTAGTCATCTTCCCTGCTACCAGAGGCAACTTCTGACTTCACTATAAATTAGTTTTGTCTTTTCGTGGACTTACGTGTAAATGGATTTGTGAGTCGACTGTTGTAACCAATACTCAAACGAAGATATAAAGAAAATTAACTTTTTATGATTTTTTCCATTTACACTGATGTGCCTGTTCATATTCCTTTCTGCATCAGGTCACAGCCTAATTAATCAAAAGATAAATTGCCACAAGAGAGGTGATGGTTGTCTATAAGACACTAAATATTACTGTAGGGGGCTTTTGCCTTGTTTCATTTTTTTTTTTTTTTCCTCCCAG	-			P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	78	235	0	ENST00000370651.3:c.404+1_405-1del		p.X135_splice	ENST00000370651	NM_003463.4	135																																																																																
ARID2	196528	MSKCC	GRCh37	12	46233261	46233261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	79	306	0	ENST00000334344.6:c.1480C>T	p.His494Tyr	p.H494Y	ENST00000334344	NM_152641.2	494	Cat/Tat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914417	32914417	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	57	410	0	ENST00000380152.3:c.5925T>A	p.Cys1975Ter	p.C1975*	ENST00000380152		1975	tgT/tgA																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3799626	3799626	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	82	300	0	ENST00000262367.5:c.3836+2T>A		p.X1279_splice	ENST00000262367	NM_004380.2	1279																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72828669	72828669	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	84	638	0	ENST00000268489.5:c.7912C>G	p.Pro2638Ala	p.P2638A	ENST00000268489	NM_006885.3	2638	Cct/Gct																																																																															
NF1	4763	MSKCC	GRCh37	17	29559146	29559146	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	61	298	0	ENST00000358273.4:c.3253C>G	p.Leu1085Val	p.L1085V	ENST00000358273	NM_001042492.2	1085	Ctg/Gtg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740780	58740780	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	69	487	0	ENST00000305921.3:c.1685A>C	p.Gln562Pro	p.Q562P	ENST00000305921	NM_003620.3	562	cAg/cCg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2202748	2202748	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	97	616	0	ENST00000398665.3:c.757C>G	p.Leu253Val	p.L253V	ENST00000398665	NM_032482.2	253	Ctg/Gtg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10257099	10257099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	200	671	0	ENST00000340748.4:c.2774C>T	p.Ser925Leu	p.S925L	ENST00000340748		925	tCa/tTa																																																																															
CCNE1	898	MSKCC	GRCh37	19	30311617	30311617	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	77	238	0	ENST00000262643.3:c.471A>T	p.Glu157Asp	p.E157D	ENST00000262643	NM_001238.2	157	gaA/gaT																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204756	128204756	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	238	828	1	ENST00000341105.2:c.685C>A	p.Leu229Met	p.L229M	ENST00000341105	NM_032638.4	229	Ctg/Atg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928031	178928031	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	76	319	0	ENST00000263967.3:c.1309G>T	p.Val437Leu	p.V437L	ENST00000263967	NM_006218.2	437	Gta/Tta																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080234	5080234	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	55	174	0	ENST00000381652.3:c.2137C>T	p.Gln713Ter	p.Q713*	ENST00000381652	NM_004972.3	713	Cag/Tag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484163	8484163	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	115	489	0	ENST00000356435.5:c.3369G>C	p.Met1123Ile	p.M1123I	ENST00000356435		1123	atG/atC																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486288	8486289	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	83	294	0	ENST00000356435.5:c.2528_2529delinsAT	p.Trp843Tyr	p.W843Y	ENST00000356435		843	tGG/tAT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411379	63411379	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	76	760	0	ENST00000330258.3:c.1788G>T	p.Arg596Ser	p.R596S	ENST00000330258	NM_152424.3	596	agG/agT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0053175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	237	637	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849800	156849800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	92	499	0	ENST00000524377.1:c.2056C>T	p.Arg686Cys	p.R686C	ENST00000524377	NM_002529.3	686	Cgc/Tgc																																																																															
CBL	867	MSKCC	GRCh37	11	119167716	119167716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	137	444	0	ENST00000264033.4:c.2125C>T	p.Arg709Trp	p.R709W	ENST00000264033	NM_005188.3	709	Cgg/Tgg																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1325367	1325367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	58	477	1	ENST00000381566.1:c.308C>T	p.Thr103Met	p.T103M	ENST00000381566		103	aCg/aTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292430	15292430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	111	841	5	ENST00000263388.2:c.2749G>A	p.Gly917Arg	p.G917R	ENST00000263388	NM_000435.2	917	Gga/Aga																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99181227	99181227	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0053175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	176	483	0	ENST00000074304.5:c.2167+1G>A		p.X723_splice	ENST00000074304	NM_001134224.1	723																																																																																
PREX2	80243	MSKCC	GRCh37	8	69002819	69002819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	249	235	0	ENST00000288368.4:c.2119G>A	p.Val707Met	p.V707M	ENST00000288368	NM_024870.2	707	Gtg/Atg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0053190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	73	410	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0053190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	208	547	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0053190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	64	290	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118901	70118902	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0053190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	200	611	0	ENST00000245479.2:c.474_475dupGG	p.Glu159GlyfsTer25	p.E159Gfs*25	ENST00000245479	NM_000346.3	158	gcg/gcGGg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0053190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	283	639	1	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15295773	15295773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	133	824	1	ENST00000263388.2:c.2354G>A	p.Arg785His	p.R785H	ENST00000263388	NM_000435.2	785	cGc/cAc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78921143	78921143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	146	477	0	ENST00000306801.3:c.3257C>T	p.Thr1086Met	p.T1086M	ENST00000306801	NM_020761.2	1086	aCg/aTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508563	106508563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	48	307	0	ENST00000359195.3:c.557C>T	p.Ala186Val	p.A186V	ENST00000359195	NM_002649.2	186	gCg/gTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0053190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	55	210	0	ENST00000288602.6:c.1742A>C	p.Asn581Thr	p.N581T	ENST00000288602	NM_004333.4	581	aAt/aCt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115277070	115277070	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	124	349	1	ENST00000438362.2:c.713C>G	p.Ala238Gly	p.A238G	ENST00000438362	NM_001242891.1	238	gCc/gGc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831035	72831035	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	125	384	0	ENST00000268489.5:c.5546T>C	p.Ile1849Thr	p.I1849T	ENST00000268489	NM_006885.3	1849	aTc/aCc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127403	55127403	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	108	480	0	ENST00000257290.5:c.191A>C	p.Glu64Ala	p.E64A	ENST00000257290	NM_006206.4	64	gAa/gCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0053196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	176	524	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441780	49441780	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	59	569	0	ENST00000301067.7:c.4204C>T	p.Gln1402Ter	p.Q1402*	ENST00000301067	NM_003482.3	1402	Cag/Tag																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801491	1801491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	63	775	0	ENST00000260795.2:c.397G>A	p.Asp133Asn	p.D133N	ENST00000260795		133	Gat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0053319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	260	539	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0053319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	168	913	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900171	101900171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	67	345	0	ENST00000374994.4:c.605C>T	p.Ala202Val	p.A202V	ENST00000374994	NM_004612.2	202	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs28934873		P-0053319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	178	932	0	ENST00000269305.4:c.398T>C	p.Met133Thr	p.M133T	ENST00000269305	NM_001126112.2	133	aTg/aCg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949124	44949124	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	123	329	0	ENST00000377967.4:c.3685C>T	p.Gln1229Ter	p.Q1229*	ENST00000377967	NM_021140.2	1229	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106356	27106356	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0053319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	119	699	0	ENST00000324856.7:c.5968del	p.Ser1990AlafsTer25	p.S1990Afs*25	ENST00000324856	NM_006015.4	1989	cgA/cg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520302	176520302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	91	485	0	ENST00000292408.4:c.1221G>T	p.Gln407His	p.Q407H	ENST00000292408	NM_213647.1	407	caG/caT																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0019667-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			180	212	492	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019667-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	288	1285	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022279	31022279	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019667-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	157	652	0	ENST00000375687.4:c.1764G>C	p.Gln588His	p.Q588H	ENST00000375687	NM_015338.5	588	caG/caC																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149514451	149514469	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTCTTCTCGTGCAGTGT	CTTTCTTCTCGTGCAGTGT	-			P-0019667-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			438	215	882	0	ENST00000261799.4:c.475_493del	p.Thr159GlyfsTer54	p.T159Gfs*54	ENST00000261799	NM_002609.3	159	ACACTGCACGAGAAGAAAGgg/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0038280-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			467	132	457	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038280-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			409	132	741	2	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0038280-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			443	132	696	1	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0038280-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			451	168	848	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138570	2138570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038280-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			756	149	862	0	ENST00000219476.3:c.5383C>T	p.Arg1795Cys	p.R1795C	ENST00000219476	NM_000548.3	1795	Cgc/Tgc																																																																															
AXL	558	MSKCC	GRCh37	19	41744385	41744385	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038280-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			611	147	864	1	ENST00000301178.4:c.1010delC	p.Pro337LeufsTer29	p.P337Lfs*29	ENST00000301178	NM_021913.4	335	ggC/gg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772951	135772951	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038280-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			550	99	453	0	ENST00000298552.3:c.2672del	p.Asn891ThrfsTer40	p.N891Tfs*40	ENST00000298552	NM_001162426.1	891	aAc/ac																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038280-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			419	139	625	1	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
YES1	7525	MSKCC	GRCh37	18	751726	751726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038280-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			473	91	238	0	ENST00000314574.4:c.350G>T	p.Arg117Ile	p.R117I	ENST00000314574	NM_005433.3	117	aGa/aTa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396839	396839	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145608130		P-0038280-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			722	193	962	1	ENST00000262320.3:c.187C>T	p.Arg63Cys	p.R63C	ENST00000262320	NM_003502.3	63	Cgc/Tgc																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439770	51439772	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0038280-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			290	135	539	0	ENST00000262662.1:c.338_340del	p.Glu113del	p.E113del	ENST00000262662		112	aAAGaa/aaa																																																																															
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0038280-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			711	78	509	0	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056047	26056047	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038280-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			464	111	502	0	ENST00000343677.2:c.610A>G	p.Lys204Glu	p.K204E	ENST00000343677	NM_005319.3	204	Aag/Gag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681031	117681031	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038280-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			443	126	518	0	ENST00000368508.3:c.3589T>C	p.Tyr1197His	p.Y1197H	ENST00000368508	NM_002944.2	1197	Tat/Cat																																																																															
BCOR	54880	MSKCC	GRCh37	X	39911423	39911424	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0038280-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			496	173	685	0	ENST00000378444.4:c.5206_5207del	p.Leu1736AlafsTer12	p.L1736Afs*12	ENST00000378444	NM_001123385.1	1736	CTg/g																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281045	49281045	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200483129		P-0038280-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			782	42	624	0	ENST00000282018.3:c.92G>A	p.Cys31Tyr	p.C31Y	ENST00000282018	NM_020377.2	31	tGc/tAc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40860078	40860078	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038280-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			560	149	639	1	ENST00000428826.2:c.1558A>G	p.Asn520Asp	p.N520D	ENST00000428826		520	Aac/Gac																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4094483	4094483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038280-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			651	211	970	0	ENST00000262948.5:c.1060C>T	p.Pro354Ser	p.P354S	ENST00000262948	NM_030662.3	354	Cca/Tca																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11113790	11113790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038280-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			670	199	850	0	ENST00000344626.4:c.1898C>T	p.Ala633Val	p.A633V	ENST00000344626	NM_003072.3	633	gCc/gTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130319	11130319	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038280-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			734	199	843	0	ENST00000344626.4:c.2558T>C	p.Phe853Ser	p.F853S	ENST00000344626	NM_003072.3	853	tTc/tCc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610656	52610656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038280-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			372	184	568	0	ENST00000394830.3:c.3517C>T	p.His1173Tyr	p.H1173Y	ENST00000394830	NM_018313.4	1173	Cac/Tac																																																																															
FLT4	2324	MSKCC	GRCh37	5	180039575	180039575	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038280-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			773	190	993	0	ENST00000261937.6:c.3468del	p.Lys1157ArgfsTer96	p.K1157Rfs*96	ENST00000261937	NM_182925.4	1156	ccC/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045733-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			624	144	545	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RET	5979	MSKCC	GRCh37	10	43597883	43597883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045733-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			968	422	1017	2	ENST00000355710.3:c.431G>A	p.Arg144His	p.R144H	ENST00000355710	NM_020975.4	144	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577497	7577497	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0045733-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			607	280	747	1	ENST00000269305.4:c.782+2T>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
RAD54L	8438	MSKCC	GRCh37	1	46733203	46733203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045733-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			767	79	744	0	ENST00000371975.4:c.964C>T	p.Leu322Phe	p.L322F	ENST00000371975	NM_003579.3	322	Ctc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0052147-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	76	517	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134266	11134266	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052147-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			521	104	700	1	ENST00000344626.4:c.2932C>T	p.Arg978Ter	p.R978*	ENST00000344626	NM_003072.3	978	Cga/Tga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599958	10599971	+	frameshift_variant	Frame_Shift_Del	DEL	CCACATCGTAGCGC	CCACATCGTAGCGC	-			P-0052147-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			678	136	807	0	ENST00000171111.5:c.1605_1618del	p.Arg536AsnfsTer33	p.R536Nfs*33	ENST00000171111	NM_203500.1	535	gaGCGCTACGATGTGGaa/gaaa																																																																															
STK11	6794	MSKCC	GRCh37	19	1219352	1219366	+	inframe_deletion	In_Frame_Del	DEL	GCATGCAGGAAATGC	GCATGCAGGAAATGC	-			P-0052147-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			604	145	812	0	ENST00000326873.7:c.404_418del	p.Gly135_Leu140delinsVal	p.G135_L140delinsV	ENST00000326873	NM_000455.4	135	gGCATGCAGGAAATGCtg/gtg																																																																															
PARP1	142	MSKCC	GRCh37	1	226567272	226567272	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0052147-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	67	528	2	ENST00000366794.5:c.1612+2T>C		p.X538_splice	ENST00000366794	NM_001618.3	538																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56494878	56494895	+	inframe_deletion	In_Frame_Del	DEL	CCCCGTCCAGTCTCTCTA	CCCCGTCCAGTCTCTCTA	-			P-0052147-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			667	119	561	1	ENST00000267101.3:c.3236_3253del	p.Pro1079_Leu1084del	p.P1079_L1084del	ENST00000267101	NM_001982.3	1079	CCCCGTCCAGTCTCTCTA/-																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417499	139417499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052147-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			800	167	850	0	ENST00000277541.6:c.545G>T	p.Cys182Phe	p.C182F	ENST00000277541	NM_017617.3	182	tGt/tTt																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1331482	1331482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052147-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			778	139	598	0	ENST00000381566.1:c.46G>A	p.Gly16Arg	p.G16R	ENST00000381566		16	Gga/Aga																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0052481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	326	701	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578512	7578532	+	inframe_deletion	In_Frame_Del	DEL	TCTTGGCCAGTTGGCAAAACA	TCTTGGCCAGTTGGCAAAACA	-			P-0052481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	196	960	0	ENST00000269305.4:c.398_418del	p.Met133_Lys139del	p.M133_K139del	ENST00000269305	NM_001126112.2	133	aTGTTTTGCCAACTGGCCAAGAcc/acc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123310824	123310824	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	161	713	0	ENST00000358487.5:c.604C>G	p.His202Asp	p.H202D	ENST00000358487	NM_000141.4	202	Cat/Gat																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938499	44938499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	165	610	0	ENST00000377967.4:c.3047G>A	p.Gly1016Glu	p.G1016E	ENST00000377967	NM_021140.2	1016	gGa/gAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163903	47163908	+	frameshift_variant	Frame_Shift_Ins	INS	CTTCTT	CTTCTT	GACGGGCGGATCACCCGTCTTGG			P-0052481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	90	552	0	ENST00000409792.3:c.2218_2223delinsCCAAGACGGGTGATCCGCCCGTC	p.Lys740ProfsTer33	p.K740Pfs*33	ENST00000409792	NM_014159.6	740	AAGAAG/CCAAGACGGGTGATCCGCCCGTC																																																																															
TSC1	7248	MSKCC	GRCh37	9	135801095	135801095	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052861-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			395	53	508	0	ENST00000298552.3:c.242G>C	p.Gly81Ala	p.G81A	ENST00000298552	NM_001162426.1	81	gGc/gCc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627686	37627686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052861-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			659	93	668	3	ENST00000447079.4:c.1601C>T	p.Ser534Phe	p.S534F	ENST00000447079	NM_015083.1	534	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0052915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	338	632	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937526	32937526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	230	508	0	ENST00000380152.3:c.8187G>T	p.Lys2729Asn	p.K2729N	ENST00000380152		2729	aaG/aaT																																																																															
FH	2271	MSKCC	GRCh37	1	241675359	241675359	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0052915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	443	367	0	ENST00000366560.3:c.463G>T	p.Glu155Ter	p.E155*	ENST00000366560	NM_000143.3	155	Gaa/Taa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176132971	176132971	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	278	328	0	ENST00000367669.3:c.622G>C	p.Asp208His	p.D208H	ENST00000367669	NM_022457.5	208	Gac/Cac																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50488239	50488240	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0052915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	60	486	0	ENST00000394963.4:c.1156_1157del	p.Lys386AspfsTer5	p.K386Dfs*5	ENST00000394963	NM_003076.4	385	AAa/a																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865551	57865551	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0052915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	139	728	0	ENST00000228682.2:c.3028A>T	p.Ser1010Cys	p.S1010C	ENST00000228682	NM_005269.2	1010	Agc/Tgc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112470	115112470	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	112	705	0	ENST00000257566.3:c.1270del	p.Asp424ThrfsTer208	p.D424Tfs*208	ENST00000257566	NM_016569.3	424	Gac/ac																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30105634	30105634	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	327	573	0	ENST00000331968.5:c.1052A>G	p.Glu351Gly	p.E351G	ENST00000331968	NM_002742.2	351	gAa/gGa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9928049	9928049	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	88	275	0	ENST00000330684.3:c.1690A>T	p.Met564Leu	p.M564L	ENST00000330684	NM_001134407.1	564	Atg/Ttg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7983595	7983595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	328	590	0	ENST00000319144.4:c.712G>A	p.Asp238Asn	p.D238N	ENST00000319144	NM_001139.2	238	Gac/Aac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983324	15983324	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	258	324	0	ENST00000268712.3:c.3455A>G	p.Lys1152Arg	p.K1152R	ENST00000268712	NM_006311.3	1152	aAa/aGa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259228	89259228	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0052915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	200	321	0	ENST00000336596.2:c.372C>A	p.Tyr124Ter	p.Y124*	ENST00000336596	NM_005233.5	124	taC/taA																																																																															
KIT	3815	MSKCC	GRCh37	4	55524186	55524187	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0052915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	38	550	0	ENST00000288135.5:c.5_6delinsTT	p.Arg2Ile	p.R2I	ENST00000288135	NM_000222.2	2	aGA/aTT																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004219	150004219	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0052915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	86	290	0	ENST00000253339.5:c.2006T>A	p.Met669Lys	p.M669K	ENST00000253339		669	aTg/aAg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513374	106513374	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	24	268	0	ENST00000359195.3:c.2278A>C	p.Ser760Arg	p.S760R	ENST00000359195	NM_002649.2	760	Agt/Cgt																																																																															
CD276	80381	MSKCC	GRCh37	15	74003499	74003500	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	230	725	0	ENST00000318443.5:c.1571dup	p.Asp524GlufsTer6	p.D524Efs*6	ENST00000318443	NM_001024736.1	524	gac/gAac																																																																															
CDK12	51755	MSKCC	GRCh37	17	37676253	37676253	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0052969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	227	637	0	ENST00000447079.4:c.3008T>G	p.Leu1003Arg	p.L1003R	ENST00000447079	NM_015083.1	1003	cTa/cGa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37676309	37676309	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	172	585	0	ENST00000447079.4:c.3064del	p.Asp1022MetfsTer35	p.D1022Mfs*35	ENST00000447079	NM_015083.1	1022	Gat/at																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350770	15350770	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	283	806	0	ENST00000263377.2:c.3233G>C	p.Ser1078Thr	p.S1078T	ENST00000263377	NM_058243.2	1078	aGc/aCc																																																																															
MGA	23269	MSKCC	GRCh37	15	41989217	41989217	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0052970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	71	614	0	ENST00000219905.7:c.2009C>G	p.Ser670Ter	p.S670*	ENST00000219905	NM_001164273.1	670	tCa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0052971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	188	507	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231506	5231506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	272	829	1	ENST00000357368.4:c.1970G>A	p.Arg657His	p.R657H	ENST00000357368	NM_002850.3	657	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0052971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	354	766	0	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5219979	5219979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	262	869	1	ENST00000357368.4:c.3736G>A	p.Val1246Met	p.V1246M	ENST00000357368	NM_002850.3	1246	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0052972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	36	529	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682514	37682514	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	57	644	0	ENST00000447079.4:c.3705C>G	p.Asn1235Lys	p.N1235K	ENST00000447079	NM_015083.1	1235	aaC/aaG																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170015111	170015111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	99	816	0	ENST00000295797.4:c.1517G>A	p.Gly506Asp	p.G506D	ENST00000295797	NM_002740.5	506	gGt/gAt																																																																															
BCL6	604	MSKCC	GRCh37	3	187440336	187440336	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	58	736	0	ENST00000232014.4:c.2031G>C	p.Leu677Phe	p.L677F	ENST00000232014	NM_001130845.1	677	ttG/ttC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540767	187540767	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	44	585	0	ENST00000441802.2:c.6973A>G	p.Asn2325Asp	p.N2325D	ENST00000441802	NM_005245.3	2325	Aat/Gat																																																																															
FANCC	2176	MSKCC	GRCh37	9	97869442	97869442	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	59	1015	0	ENST00000289081.3:c.1439G>C	p.Arg480Thr	p.R480T	ENST00000289081	NM_000136.2	480	aGa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0052975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	115	1006	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
WT1	7490	MSKCC	GRCh37	11	32421519	32421519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	92	692	0	ENST00000332351.3:c.1073C>T	p.Thr358Met	p.T358M	ENST00000332351	NM_024426.4	358	aCg/aTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29554308	29554308	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0052975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	210	695	0	ENST00000358273.4:c.2324A>T	p.Glu775Val	p.E775V	ENST00000358273	NM_001042492.2	775	gAg/gTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602511	10602511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	57	1066	0	ENST00000171111.5:c.1067C>T	p.Ala356Val	p.A356V	ENST00000171111	NM_203500.1	356	gCg/gTg																																																																															
CBFB	865	MSKCC	GRCh37	16	67070557	67070557	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	135	319	0	ENST00000412916.2:c.181G>C	p.Gly61Arg	p.G61R	ENST00000412916		61	Gga/Cga																																																																															
POLE	5426	MSKCC	GRCh37	12	133241895	133241895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	132	611	0	ENST00000320574.5:c.2461C>T	p.Arg821Cys	p.R821C	ENST00000320574	NM_006231.2	821	Cgc/Tgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685314	89685315	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TG	TG	-			P-0052978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	92	291	0	ENST00000371953.3:c.209+1_209+2del		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48575671	48575671	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0052978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	85	499	0	ENST00000342988.3:c.431C>G	p.Ser144Ter	p.S144*	ENST00000342988	NM_005359.5	144	tCa/tGa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274192	10274192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	96	653	1	ENST00000330684.3:c.77C>T	p.Ala26Val	p.A26V	ENST00000330684	NM_001134407.1	26	gCg/gTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	17	520	0	ENST00000342988.3:c.1051G>C	p.Asp351His	p.D351H	ENST00000342988	NM_005359.5	351	Gat/Cat																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031939	26031939	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	39	569	0	ENST00000244661.2:c.350G>C	p.Arg117Pro	p.R117P	ENST00000244661	NM_003537.3	117	cGa/cCa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060745	38060772	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTTATGCTGCTGCTCCGAGGAGGACA	AGCTTATGCTGCTGCTCCGAGGAGGACA	-			P-0052978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	133	879	1	ENST00000250448.2:c.1217_1244del	p.Met406ArgfsTer25	p.M406Rfs*25	ENST00000250448	NM_004496.3	406	aTGTCCTCCTCGGAGCAGCAGCATAAGCTg/ag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10254497	10254497	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	167	670	0	ENST00000340748.4:c.3013A>T	p.Ser1005Cys	p.S1005C	ENST00000340748		1005	Agc/Tgc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375463	15375469	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCTG	GCCGCTG	-			P-0052978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	141	856	0	ENST00000263377.2:c.958_964del	p.Gln320GlyfsTer7	p.Q320Gfs*7	ENST00000263377	NM_058243.2	320	CAGCGGCgg/gg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098929	178098949	+	inframe_deletion	In_Frame_Del	DEL	AAGTCAAATACTTCTCGACTT	AAGTCAAATACTTCTCGACTT	-			P-0052978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	85	439	0	ENST00000397062.3:c.96_116del	p.Arg34_Ser40del	p.R34_S40del	ENST00000397062	NM_006164.4	32	gtAAGTCGAGAAGTATTTGACTTc/gtc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47144912	47144912	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0052978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	108	448	0	ENST00000409792.3:c.4841T>C	p.Ile1614Thr	p.I1614T	ENST00000409792	NM_014159.6	1614	aTa/aCa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589594	67589611	+	inframe_deletion	In_Frame_Del	DEL	AACACTCAGTTTCAAGAA	AACACTCAGTTTCAAGAA	-			P-0052978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	83	302	0	ENST00000274335.5:c.1359_1376del	p.Asn453_Glu458del	p.N453_E458del	ENST00000274335		453	AACACTCAGTTTCAAGAA/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0052981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	88	718	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38287197	38287203	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AACCTGA	AACCTGA	-			P-0052981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	61	914	0	ENST00000425967.3:c.454_457+3del		p.X152_splice	ENST00000425967	NM_001174067.1	152																																																																																
RBM10	8241	MSKCC	GRCh37	X	47040688	47040689	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0052981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	87	480	0	ENST00000329236.7:c.1090dup	p.Glu364GlyfsTer76	p.E364Gfs*76	ENST00000329236	NM_001204466.1	363	-/G																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0052990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	42	322	1	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0052990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	94	1008	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247246	153247246	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	84	461	0	ENST00000281708.4:c.1556A>G	p.Tyr519Cys	p.Y519C	ENST00000281708	NM_033632.3	519	tAt/tGt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38963019	38963019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	29	325	1	ENST00000357387.3:c.1525G>C	p.Asp509His	p.D509H	ENST00000357387	NM_152756.3	509	Gat/Cat																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949086	44949088	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0052997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	109	264	0	ENST00000377967.4:c.3647_3649del	p.Asp1216_Leu1217delinsVal	p.D1216_L1217delinsV	ENST00000377967	NM_021140.2	1216	gATTtg/gtg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	69	496	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540662	187540663	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	64	475	1	ENST00000441802.2:c.7077dup	p.Val2360CysfsTer5	p.V2360Cfs*5	ENST00000441802	NM_005245.3	2359	-/T																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026436	6026436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	23	118	0	ENST00000265849.7:c.1960C>A	p.Pro654Thr	p.P654T	ENST00000265849	NM_000535.5	654	Cct/Act																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151880196	151880196	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	57	495	0	ENST00000262189.6:c.5128C>T	p.Gln1710Ter	p.Q1710*	ENST00000262189	NM_170606.2	1710	Cag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118784	115118784	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	87	592	0	ENST00000257566.3:c.557T>G	p.Ile186Ser	p.I186S	ENST00000257566	NM_016569.3	186	aTt/aGt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32936830	32936830	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0053003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	55	332	0	ENST00000380152.3:c.7976G>A	p.Arg2659Lys	p.R2659K	ENST00000380152		2659	aGa/aAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0053005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	53	477	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	103	855	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188196	32188196	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	42	715	0	ENST00000375023.3:c.1145C>A	p.Pro382Gln	p.P382Q	ENST00000375023	NM_004557.3	382	cCa/cAa																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115269712	115269712	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0053005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	35	333	0	ENST00000438362.2:c.1495-1G>C		p.X499_splice	ENST00000438362	NM_001242891.1	499																																																																																
DDR2	4921	MSKCC	GRCh37	1	162729596	162729596	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	65	449	0	ENST00000367921.3:c.682G>T	p.Gly228Trp	p.G228W	ENST00000367921	NM_006182.2	228	Ggg/Tgg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43708614	43708614	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0053005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	33	429	0	ENST00000382044.4:c.4682G>T	p.Gly1561Val	p.G1561V	ENST00000382044	NM_001141980.1	1561	gGa/gTa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81819628	81819628	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	84	656	1	ENST00000359376.3:c.34G>T	p.Glu12Ter	p.E12*	ENST00000359376	NM_002661.3	12	Gaa/Taa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231734	66231734	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	49	491	0	ENST00000273854.3:c.1966T>A	p.Tyr656Asn	p.Y656N	ENST00000273854	NM_004439.5	656	Tat/Aat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178125	56178125	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	67	427	0	ENST00000399503.3:c.3098G>C	p.Cys1033Ser	p.C1033S	ENST00000399503	NM_005921.1	1033	tGt/tCt																																																																															
AR	367	MSKCC	GRCh37	X	66765547	66765547	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	52	794	3	ENST00000374690.3:c.559G>T	p.Glu187Ter	p.E187*	ENST00000374690	NM_000044.3	187	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0053031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	125	715	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574000	7574000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0053031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	114	819	1	ENST00000269305.4:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000269305	NM_001126112.2	343	Gag/Tag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52696229	52696229	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	45	620	0	ENST00000394830.3:c.448G>C	p.Glu150Gln	p.E150Q	ENST00000394830	NM_018313.4	150	Gag/Cag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098800	178098800	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	144	657	0	ENST00000397062.3:c.245A>G	p.Glu82Gly	p.E82G	ENST00000397062	NM_006164.4	82	gAa/gGa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44515577	44515577	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	68	767	0	ENST00000291552.4:c.319G>C	p.Asp107His	p.D107H	ENST00000291552	NM_006758.2	107	Gac/Cac																																																																															
APC	324	MSKCC	GRCh37	5	112176555	112176555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	24	347	0	ENST00000257430.4:c.5264C>T	p.Ala1755Val	p.A1755V	ENST00000257430	NM_000038.5	1755	gCg/gTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89877338	89877338	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0053031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	41	603	0	ENST00000389301.3:c.425G>A	p.Arg142Lys	p.R142K	ENST00000389301	NM_000135.2	142	aGa/aAa																																																																															
POLE	5426	MSKCC	GRCh37	12	133252376	133252376	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759414746		P-0053031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	104	461	0	ENST00000320574.5:c.1051G>A	p.Val351Ile	p.V351I	ENST00000320574	NM_006231.2	351	Gtc/Atc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89882351	89882351	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	61	685	0	ENST00000389301.3:c.123G>C	p.Gln41His	p.Q41H	ENST00000389301	NM_000135.2	41	caG/caC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0051294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	302	402	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251839	212251839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	209	281	0	ENST00000342788.4:c.3220G>A	p.Glu1074Lys	p.E1074K	ENST00000342788	NM_005235.2	1074	Gaa/Aaa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458878	120458878	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	375	586	2	ENST00000256646.2:c.6467C>G	p.Ser2156Cys	p.S2156C	ENST00000256646	NM_024408.3	2156	tCt/tGt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256735	16256735	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	346	471	1	ENST00000375759.3:c.4000G>T	p.Glu1334Ter	p.E1334*	ENST00000375759	NM_015001.2	1334	Gaa/Taa																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45799201	45799201	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	246	542	3	ENST00000372115.3:c.190C>T	p.Gln64Ter	p.Q64*	ENST00000372115	NM_001048171.1	64	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425263	49425263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	799	598	6	ENST00000301067.7:c.13225G>A	p.Glu4409Lys	p.E4409K	ENST00000301067	NM_003482.3	4409	Gag/Aag																																																																															
POLE	5426	MSKCC	GRCh37	12	133249332	133249332	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	375	571	0	ENST00000320574.5:c.1567G>C	p.Glu523Gln	p.E523Q	ENST00000320574	NM_006231.2	523	Gag/Cag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954040	32954040	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	268	411	0	ENST00000380152.3:c.9107A>C	p.Gln3036Pro	p.Q3036P	ENST00000380152		3036	cAa/cCa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350954	89350954	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	502	643	0	ENST00000301030.4:c.1996C>T	p.Gln666Ter	p.Q666*	ENST00000301030	NM_001256183.1	666	Cag/Tag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528752	157528752	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	303	416	0	ENST00000346085.5:c.6477G>C	p.Leu2159Phe	p.L2159F	ENST00000346085	NM_020732.3	2159	ttG/ttC																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946451	2946451	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	322	528	0	ENST00000396946.4:c.3286G>C	p.Glu1096Gln	p.E1096Q	ENST00000396946	NM_032415.4	1096	Gag/Cag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877808	151877808	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	30	267	0	ENST00000262189.6:c.7137G>T	p.Glu2379Asp	p.E2379D	ENST00000262189	NM_170606.2	2379	gaG/gaT																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080539	5080539	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	15	268	0	ENST00000381652.3:c.2290C>G	p.Gln764Glu	p.Q764E	ENST00000381652	NM_004972.3	764	Caa/Gaa																																																																															
ATRX	546	MSKCC	GRCh37	X	76813107	76813107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	276	396	0	ENST00000373344.5:c.6514G>A	p.Glu2172Lys	p.E2172K	ENST00000373344	NM_000489.3	2172	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0052615-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			156	103	435	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916924	178916924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225060		P-0052615-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			199	110	510	0	ENST00000263967.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000263967	NM_006218.2	104	cCa/cTa																																																																															
ATM	472	MSKCC	GRCh37	11	108196186	108196186	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052615-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			173	129	541	0	ENST00000278616.4:c.6722A>G	p.Asn2241Ser	p.N2241S	ENST00000278616	NM_000051.3	2241	aAc/aGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115731	8115732	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0052615-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	41	375	0	ENST00000346208.3:c.1078_1079dup	p.Ile361AlafsTer44	p.I361Afs*44	ENST00000346208		359	-/GG																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041624	14041624	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052615-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			342	44	491	0	ENST00000311895.7:c.2171T>C	p.Val724Ala	p.V724A	ENST00000311895	NM_005236.2	724	gTg/gCg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	198	354	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64574494	64574494	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	599	841	1	ENST00000337652.1:c.916del	p.Leu306SerfsTer67	p.L306Sfs*67	ENST00000337652	NM_130803.2	306	Ctc/tc																																																																															
ATRX	546	MSKCC	GRCh37	X	76855208	76855209	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	T			P-0052783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	321	241	0	ENST00000373344.5:c.5778_5779delinsA	p.Asp1926GlufsTer29	p.D1926Efs*29	ENST00000373344	NM_000489.3	1926	gaTTat/gaAat																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0053035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	109	478	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828302	72828302	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0053035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	143	617	0	ENST00000268489.5:c.8279del	p.Met2760ArgfsTer29	p.M2760Rfs*29	ENST00000268489	NM_006885.3	2760	aTg/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0053126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	113	583	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0053126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	450	499	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0053133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	951	655	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031997	26031997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	50	529	0	ENST00000244661.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000244661	NM_003537.3	98	Gag/Aag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325870	65325870	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	43	510	0	ENST00000342505.4:c.1252G>C	p.Asp418His	p.D418H	ENST00000342505	NM_002227.2	418	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7576899	7576903	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGA	GGAGA	-			P-0053133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	127	681	0	ENST00000269305.4:c.943_947del	p.Ser315ProfsTer20	p.S315Pfs*20	ENST00000269305	NM_001126112.2	315	TCTCCc/c																																																																															
ATM	472	MSKCC	GRCh37	11	108218052	108218052	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	55	407	0	ENST00000278616.4:c.8631G>C	p.Leu2877Phe	p.L2877F	ENST00000278616	NM_000051.3	2877	ttG/ttC																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156729	20156729	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	108	390	0	ENST00000379607.5:c.28A>G	p.Lys10Glu	p.K10E	ENST00000379607	NM_001412.3	10	Aaa/Gaa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892263	9892263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	103	520	0	ENST00000330684.3:c.2227G>A	p.Glu743Lys	p.E743K	ENST00000330684	NM_001134407.1	743	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0053008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	183	485	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038526	47038526	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	135	279	0	ENST00000329236.7:c.457C>T	p.Arg153Ter	p.R153*	ENST00000329236	NM_001204466.1	153	Cga/Tga																																																																															
CDK8	1024	MSKCC	GRCh37	13	26828824	26828824	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	28	300	0	ENST00000381527.3:c.46G>C	p.Val16Leu	p.V16L	ENST00000381527	NM_001260.1	16	Gtc/Ctc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575108	48575108	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	39	297	0	ENST00000342988.3:c.302G>A	p.Trp101Ter	p.W101*	ENST00000342988	NM_005359.5	101	tGg/tAg																																																																															
AR	367	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	75	254	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711875	89711875	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0053046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	28	406	0	ENST00000371953.3:c.493G>A	p.Gly165Arg	p.G165R	ENST00000371953	NM_000314.4	165	Gga/Aga																																																																															
TET2	54790	MSKCC	GRCh37	4	106180829	106180829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	34	443	0	ENST00000380013.4:c.3857C>T	p.Ser1286Phe	p.S1286F	ENST00000380013	NM_001127208.2	1286	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0053051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	161	676	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117695932	117695932	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	38	560	0	ENST00000369458.3:c.505G>C	p.Glu169Gln	p.E169Q	ENST00000369458	NM_024626.3	169	Gag/Cag																																																																															
RECQL	5965	MSKCC	GRCh37	12	21636418	21636418	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0053051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	53	587	0	ENST00000421138.2:c.592A>G	p.Lys198Glu	p.K198E	ENST00000421138		198	Aaa/Gaa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50785554	50785554	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	55	596	0	ENST00000398568.2:c.544C>G	p.Gln182Glu	p.Q182E	ENST00000398568	NM_001042412.1	182	Caa/Gaa																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794436	242794436	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0053051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	48	758	0	ENST00000334409.5:c.506T>C	p.Leu169Pro	p.L169P	ENST00000334409	NM_005018.2	169	cTg/cCg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683563	162683563	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0053051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	64	508	0	ENST00000366898.1:c.406A>T	p.Ser136Cys	p.S136C	ENST00000366898	NM_004562.2	136	Agt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0053052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	66	484	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARAF	369	MSKCC	GRCh37	X	47426710	47426710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	72	765	0	ENST00000377045.4:c.955G>T	p.Gly319Cys	p.G319C	ENST00000377045	NM_001654.4	319	Ggc/Tgc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274043	10274043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	64	880	0	ENST00000330684.3:c.226C>T	p.Arg76Cys	p.R76C	ENST00000330684	NM_001134407.1	76	Cgc/Tgc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610369	10610369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	127	905	0	ENST00000171111.5:c.341G>T	p.Gly114Val	p.G114V	ENST00000171111	NM_203500.1	114	gGg/gTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420273	88420273	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	77	557	0	ENST00000360948.2:c.2413G>T	p.Gly805Trp	p.G805W	ENST00000360948	NM_001012338.2	805	Ggg/Tgg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820941	3820941	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	45	656	0	ENST00000262367.5:c.2510G>T	p.Gly837Val	p.G837V	ENST00000262367	NM_004380.2	837	gGg/gTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923403	9923403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	87	652	0	ENST00000330684.3:c.1884G>T	p.Lys628Asn	p.K628N	ENST00000330684	NM_001134407.1	628	aaG/aaT																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243499	41243499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	48	620	0	ENST00000357654.3:c.4049G>T	p.Gly1350Val	p.G1350V	ENST00000357654	NM_007294.3	1350	gGc/gTc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31464347	31464347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	98	575	0	ENST00000344624.3:c.2570G>T	p.Cys857Phe	p.C857F	ENST00000344624		857	tGt/tTt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524527	176524527	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0053052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	47	870	0	ENST00000292408.4:c.2260-1G>T		p.X754_splice	ENST00000292408	NM_213647.1	754																																																																																
CDKN2B	1030	MSKCC	GRCh37	9	22008859	22008859	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	68	664	0	ENST00000276925.6:c.94C>G	p.Gln32Glu	p.Q32E	ENST00000276925	NM_004936.3	32	Cag/Gag																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323354	31323354	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	17	410	0	ENST00000412585.2:c.635A>C	p.His212Pro	p.H212P	ENST00000412585	NM_005514.6	212	cAc/cCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0053055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	17	352	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0053055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	24	494	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0053064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	264	477	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	75	265	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16265348	16265348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	61	547	0	ENST00000375759.3:c.10840G>A	p.Val3614Ile	p.V3614I	ENST00000375759	NM_015001.2	3614	Gtt/Att																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0053064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	40	205	2	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
STAT3	6774	MSKCC	GRCh37	17	40491424	40491424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	260	438	0	ENST00000264657.5:c.376G>A	p.Gly126Arg	p.G126R	ENST00000264657	NM_139276.2	126	Ggg/Agg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437617	52437618	+	missense_variant	Missense_Mutation	DNP	TT	TT	GG			P-0053064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	34	582	1	ENST00000460680.1:c.1543_1544delinsCC	p.Asn515Pro	p.N515P	ENST00000460680	NM_004656.3	515	AAc/CCc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710578	114710578	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	292	322	0	ENST00000543371.1:c.63C>G	p.Phe21Leu	p.F21L	ENST00000543371	NM_001198531.1	21	ttC/ttG																																																																															
RAC1	5879	MSKCC	GRCh37	7	6426900	6426900	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0053064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	74	341	0	ENST00000356142.4:c.93A>T	p.Glu31Asp	p.E31D	ENST00000356142	NM_018890.3	31	gaA/gaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0053071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	101	375	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578233	7578234	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0053071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	122	551	0	ENST00000269305.4:c.614_615dup	p.Leu206IlefsTer42	p.L206Ifs*42	ENST00000269305	NM_001126112.2	205	-/AT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971155	21971155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	90	304	0	ENST00000304494.5:c.203C>T	p.Ala68Val	p.A68V	ENST00000304494	NM_000077.4	68	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0053076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	99	391	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593464	48593465	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0053076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	26	273	0	ENST00000342988.3:c.1217_1218del	p.Ala406GlyfsTer22	p.A406Gfs*22	ENST00000342988	NM_005359.5	405	caCGcg/cacg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577549	7577550	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0053076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	126	508	0	ENST00000269305.4:c.730_731dup	p.Gly245AlafsTer3	p.G245Afs*3	ENST00000269305	NM_001126112.2	244	ggc/ggGGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0053110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	96	285	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279562	123279562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	205	717	1	ENST00000358487.5:c.870G>C	p.Trp290Cys	p.W290C	ENST00000358487	NM_000141.4	290	tgG/tgC																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31410987	31410987	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1236254462		P-0053110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	161	500	3	ENST00000344624.3:c.3533G>A	p.Arg1178Gln	p.R1178Q	ENST00000344624		1178	cGa/cAa																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821545	32821545	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	189	499	1	ENST00000354258.4:c.49C>G	p.Pro17Ala	p.P17A	ENST00000354258	NM_000593.5	17	Ccg/Gcg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857232	9857232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	152	511	0	ENST00000330684.3:c.4169C>T	p.Ser1390Leu	p.S1390L	ENST00000330684	NM_001134407.1	1390	tCg/tTg																																																																															
ALK	238	MSKCC	GRCh37	2	29416698	29416698	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56181542		P-0053110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	144	440	0	ENST00000389048.3:c.4255G>A	p.Glu1419Lys	p.E1419K	ENST00000389048	NM_004304.4	1419	Gag/Aag																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40369186	40369186	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	185	476	0	ENST00000293328.3:c.1372C>G	p.Gln458Glu	p.Q458E	ENST00000293328	NM_012448.3	458	Caa/Gaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092737	27092737	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0053110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	161	468	0	ENST00000324856.7:c.2758C>T	p.Gln920Ter	p.Q920*	ENST00000324856	NM_006015.4	920	Caa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108153536	108153536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	145	428	0	ENST00000278616.4:c.3676G>A	p.Asp1226Asn	p.D1226N	ENST00000278616	NM_000051.3	1226	Gat/Aat																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117703	115117718	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGAACCCTAGCCTACC	TGAACCCTAGCCTACC	-			P-0053110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	216	442	0	ENST00000257566.3:c.717_717+15del		p.X239_splice	ENST00000257566	NM_016569.3	239																																																																																
DNMT1	1786	MSKCC	GRCh37	19	10262125	10262125	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	190	599	0	ENST00000340748.4:c.2166G>T	p.Lys722Asn	p.K722N	ENST00000340748		722	aaG/aaT																																																																															
CD274	29126	MSKCC	GRCh37	9	5457159	5457159	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0053110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	128	344	0	ENST00000381577.3:c.133G>T	p.Glu45Ter	p.E45*	ENST00000381577	NM_014143.3	45	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0052834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	239	449	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0052834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	192	571	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0052834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	225	548	1	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69031708	69031708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	102	485	0	ENST00000288368.4:c.3463C>T	p.Gln1155Ter	p.Q1155*	ENST00000288368	NM_024870.2	1155	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0052842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	95	548	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31385104	31385104	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0052842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	75	442	0	ENST00000328111.2:c.1489C>T	p.Arg497Trp	p.R497W	ENST00000328111	NM_006892.3	497	Cgg/Tgg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657614	37657614	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	63	561	0	ENST00000447079.4:c.2531T>C	p.Met844Thr	p.M844T	ENST00000447079	NM_015083.1	844	aTg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0052846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	43	707	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0052846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	35	481	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577148	7577148	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	35	610	0	ENST00000269305.4:c.790C>G	p.Leu264Val	p.L264V	ENST00000269305	NM_001126112.2	264	Cta/Gta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0052849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	28	106	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254858	16254858	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	34	164	1	ENST00000375759.3:c.2123G>T	p.Arg708Ile	p.R708I	ENST00000375759	NM_015001.2	708	aGa/aTa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81819743	81819743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049600-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			599	128	533	0	ENST00000359376.3:c.149G>A	p.Arg50Gln	p.R50Q	ENST00000359376	NM_002661.3	50	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0049600-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			401	160	548	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
STAG2	10735	MSKCC	GRCh37	X	123197789	123197789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049600-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			294	68	439	0	ENST00000218089.9:c.1913C>T	p.Ala638Val	p.A638V	ENST00000218089	NM_001042749.1	638	gCa/gTa																																																																															
NUF2	83540	MSKCC	GRCh37	1	163317658	163317658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049600-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			224	62	287	0	ENST00000271452.3:c.1054C>T	p.Leu352Phe	p.L352F	ENST00000271452	NM_145697.2	352	Ctt/Ttt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28963969	28963969	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049600-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			214	46	319	0	ENST00000282397.4:c.1933del	p.Glu645LysfsTer36	p.E645Kfs*36	ENST00000282397	NM_002019.4	645	Gaa/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993957	72993957	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049600-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			556	142	623	0	ENST00000268489.5:c.88A>C	p.Thr30Pro	p.T30P	ENST00000268489	NM_006885.3	30	Acc/Ccc																																																																															
NF1	4763	MSKCC	GRCh37	17	29486051	29486061	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAAATTTAT	AAAAAATTTAT	-			P-0049600-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			195	40	309	0	ENST00000358273.4:c.229_239del	p.Lys77SerfsTer26	p.K77Sfs*26	ENST00000358273	NM_001042492.2	76	gaAAAAAATTTATat/gaat																																																																															
STK11	6794	MSKCC	GRCh37	19	1220418	1220419	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCATTGTGCACAAGGACATCAA			P-0049600-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			603	32	774	1	ENST00000326873.7:c.514_535dup	p.Pro179HisfsTer94	p.P179Hfs*94	ENST00000326873	NM_000455.4	171	ggc/gGCATTGTGCACAAGGACATCAAgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1223024	1223024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049600-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			658	39	691	0	ENST00000326873.7:c.963del	p.Ile322SerfsTer14	p.I322Sfs*14	ENST00000326873	NM_000455.4	321	Ccc/cc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600477	10600477	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049600-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			582	68	669	0	ENST00000171111.5:c.1378A>T	p.Arg460Trp	p.R460W	ENST00000171111	NM_203500.1	460	Agg/Tgg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39239266	39239266	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0049600-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			336	21	314	0	ENST00000402219.2:c.2390+1G>C		p.X797_splice	ENST00000402219	NM_005633.3	797																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52643915	52643916	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	AA			P-0049600-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			271	64	385	0	ENST00000394830.3:c.1980_1981delinsTT	p.Gln660_Lys661delinsHisTer	p.Q660_K661delinsH*	ENST00000394830	NM_018313.4	660	caGAaa/caTTaa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066525	94066525	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049600-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			307	86	299	0	ENST00000369303.4:c.1234A>G	p.Thr412Ala	p.T412A	ENST00000369303	NM_004440.3	412	Act/Gct																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8317912	8317912	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049600-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			233	64	304	0	ENST00000356435.5:c.5701C>G	p.Leu1901Val	p.L1901V	ENST00000356435		1901	Cta/Gta																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87482244	87482244	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049600-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			402	28	557	0	ENST00000277120.3:c.1531G>T	p.Glu511Ter	p.E511*	ENST00000277120		511	Gaa/Taa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076929	41076929	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049600-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			394	60	451	0	ENST00000373198.4:c.1491del	p.Phe498LeufsTer103	p.F498Lfs*103	ENST00000373198	NM_133170.3	497	ccC/cc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	79	455	3	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	203	758	12	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518992	103518992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	84	519	0	ENST00000355739.4:c.2330G>A	p.Arg777His	p.R777H	ENST00000355739	NM_000123.3	777	cGc/cAc																																																																															
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	31	639	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																															
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	81	395	0	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020768	37020769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	91	524	1	ENST00000358127.4:c.76dupG	p.Val26GlyfsTer49	p.V26Gfs*49	ENST00000358127	NM_001280556.1	26	gtt/gGtt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	55	315	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103755	47103756	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	92	507	1	ENST00000409792.3:c.6190_6191delGA	p.Asp2064ProfsTer8	p.D2064Pfs*8	ENST00000409792	NM_014159.6	2064	GAc/c																																																																															
MTOR	2475	MSKCC	GRCh37	1	11177103	11177103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1135176		P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	74	474	2	ENST00000361445.4:c.6974C>T	p.Ala2325Val	p.A2325V	ENST00000361445	NM_004958.3	2325	gCg/gTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	14	475	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	199	508	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128044348	128044348	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	98	724	1	ENST00000285398.2:c.1273C>T	p.Arg425Ter	p.R425*	ENST00000285398	NM_000122.1	425	Cga/Tga																																																																															
FANCA	2175	MSKCC	GRCh37	16	89806477	89806477	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs17227354		P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	96	565	0	ENST00000389301.3:c.3859G>A	p.Val1287Ile	p.V1287I	ENST00000389301	NM_000135.2	1287	Gtt/Att																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100425	8100425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	129	926	3	ENST00000346208.3:c.404delC	p.Pro135ArgfsTer60	p.P135Rfs*60	ENST00000346208		133	taC/ta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	43	587	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
RB1	5925	MSKCC	GRCh37	13	49030479	49030479	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	59	282	0	ENST00000267163.4:c.1959delA	p.Val654CysfsTer4	p.V654Cfs*4	ENST00000267163	NM_000321.2	652	Aaa/aa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118988	70118988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	149	820	1	ENST00000245479.2:c.560C>T	p.Ala187Val	p.A187V	ENST00000245479	NM_000346.3	187	gCg/gTg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522601	176522601	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	112	1000	3	ENST00000292408.4:c.1703delC	p.Pro568GlnfsTer53	p.P568Qfs*53	ENST00000292408	NM_213647.1	566	cgC/cg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	117	679	3	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
SUFU	51684	MSKCC	GRCh37	10	104309776	104309776	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202247756		P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	115	684	1	ENST00000369902.3:c.367C>T	p.Arg123Cys	p.R123C	ENST00000369902	NM_016169.3	123	Cgt/Tgt																																																																															
CIC	23152	MSKCC	GRCh37	19	42794441	42794441	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	125	1039	2	ENST00000575354.2:c.1526delC	p.Pro509HisfsTer14	p.P509Hfs*14	ENST00000575354	NM_015125.3	507	cgC/cg																																																																															
RHOA	387	MSKCC	GRCh37	3	49397743	49397743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	144	556	0	ENST00000418115.1:c.481G>A	p.Ala161Thr	p.A161T	ENST00000418115	NM_001664.2	161	Gca/Aca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762108866		P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	57	442	0	ENST00000268489.5:c.10215dup	p.Gly3406ArgfsTer25	p.G3406Rfs*25	ENST00000268489	NM_006885.3	3405	-/C																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131277	17131277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	163	961	0	ENST00000285071.4:c.175C>T	p.Arg59Cys	p.R59C	ENST00000285071	NM_144997.5	59	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs770248150		P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	19	477	0	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7579329	7579329	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912658		P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	246	808	0	ENST00000269305.4:c.358A>G	p.Lys120Glu	p.K120E	ENST00000269305	NM_001126112.2	120	Aag/Gag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245378	53245378	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	85	491	0	ENST00000375401.3:c.659C>T	p.Pro220Leu	p.P220L	ENST00000375401	NM_004187.3	220	cCg/cTg																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111921765	111921765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	75	377	0	ENST00000393256.3:c.554G>A	p.Arg185Gln	p.R185Q	ENST00000393256	NM_006538.4	185	cGa/cAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40738973	40738973	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	44	481	0	ENST00000373198.4:c.3311G>T	p.Ser1104Ile	p.S1104I	ENST00000373198	NM_133170.3	1104	aGt/aTt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439906	56439906	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	127	662	0	ENST00000407977.2:c.686C>T	p.Pro229Leu	p.P229L	ENST00000407977		229	cCg/cTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830441	72830441	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	35	255	0	ENST00000268489.5:c.6140delC	p.Pro2047LeufsTer54	p.P2047Lfs*54	ENST00000268489	NM_006885.3	2047	cCt/ct																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262483	16262483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	29	268	0	ENST00000375759.3:c.9748G>A	p.Val3250Ile	p.V3250I	ENST00000375759	NM_015001.2	3250	Gtc/Atc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30325846	30325846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	63	362	1	ENST00000322652.5:c.2044C>T	p.Arg682Cys	p.R682C	ENST00000322652	NM_015355.2	682	Cgt/Tgt																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945008	31945008	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	133	887	0	ENST00000340398.3:c.93delC	p.Ser32LeufsTer5	p.S32Lfs*5	ENST00000340398	NM_001013699.2	31	ccC/cc																																																																															
FANCC	2176	MSKCC	GRCh37	9	98003011	98003011	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	19	304	1	ENST00000289081.3:c.265del	p.Ile89PhefsTer2	p.I89Ffs*2	ENST00000289081	NM_000136.2	89	Att/tt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168910	32168910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	118	831	4	ENST00000375023.3:c.4123G>A	p.Asp1375Asn	p.D1375N	ENST00000375023	NM_004557.3	1375	Gac/Aac																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103525641	103525641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	70	407	0	ENST00000355739.4:c.2912C>T	p.Thr971Met	p.T971M	ENST00000355739	NM_000123.3	971	aCg/aTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518900	187518900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	54	468	2	ENST00000441802.2:c.12304G>A	p.Gly4102Arg	p.G4102R	ENST00000441802	NM_005245.3	4102	Gga/Aga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112422	115112422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	104	602	2	ENST00000257566.3:c.1318G>A	p.Ala440Thr	p.A440T	ENST00000257566	NM_016569.3	440	Gcc/Acc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686961	37686961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	76	538	0	ENST00000447079.4:c.3865G>A	p.Ala1289Thr	p.A1289T	ENST00000447079	NM_015083.1	1289	Gcc/Acc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185190872	185190872	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	159	623	0	ENST00000265026.3:c.1753C>T	p.Arg585Ter	p.R585*	ENST00000265026	NM_004721.4	585	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29552143	29552144	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	26	243	0	ENST00000358273.4:c.1882dup	p.Tyr628LeufsTer6	p.Y628Lfs*6	ENST00000358273	NM_001042492.2	626	ctt/cTtt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271813	15271813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	127	1105	0	ENST00000263388.2:c.6626C>T	p.Pro2209Leu	p.P2209L	ENST00000263388	NM_000435.2	2209	cCg/cTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919882	50919882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	141	884	2	ENST00000440232.2:c.2969G>A	p.Arg990His	p.R990H	ENST00000440232	NM_002691.3	990	cGc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748583	40748583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	60	458	1	ENST00000373198.4:c.2933C>T	p.Ala978Val	p.A978V	ENST00000373198	NM_133170.3	978	gCg/gTg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180951	32180951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	104	779	1	ENST00000375023.3:c.2399C>T	p.Pro800Leu	p.P800L	ENST00000375023	NM_004557.3	800	cCg/cTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538941	187538941	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	78	395	0	ENST00000441802.2:c.8799delA	p.Gly2934ValfsTer3	p.G2934Vfs*3	ENST00000441802	NM_005245.3	2933	caA/ca																																																																															
SLX4	84464	MSKCC	GRCh37	16	3652147	3652147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	113	822	1	ENST00000294008.3:c.922G>A	p.Val308Met	p.V308M	ENST00000294008	NM_032444.2	308	Gtg/Atg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300040	137300040	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	102	924	0	ENST00000481739.1:c.331del	p.Leu111TrpfsTer57	p.L111Wfs*57	ENST00000481739	NM_002957.4	109	Ccc/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991508	72991508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755878058		P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	105	706	2	ENST00000268489.5:c.2537G>A	p.Arg846His	p.R846H	ENST00000268489	NM_006885.3	846	cGc/cAc																																																																															
CD79B	974	MSKCC	GRCh37	17	62007182	62007182	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147194821		P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	118	793	1	ENST00000392795.3:c.500C>T	p.Thr167Met	p.T167M	ENST00000392795	NM_001039933.1	167	aCg/aTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188143	11188143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	104	547	0	ENST00000361445.4:c.5951C>T	p.Thr1984Met	p.T1984M	ENST00000361445	NM_004958.3	1984	aCg/aTg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206658354	206658354	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs52817862		P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	95	691	1	ENST00000367120.3:c.1448C>T	p.Thr483Met	p.T483M	ENST00000367120	NM_014002.3	483	aCg/aTg																																																																															
ATR	545	MSKCC	GRCh37	3	142274740	142274741	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	45	259	1	ENST00000350721.4:c.2319_2320delAA	p.Lys773AsnfsTer3	p.K773Nfs*3	ENST00000350721	NM_001184.3	773	aaAAta/aata																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31521250	31521250	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	93	494	0	ENST00000344624.3:c.927delA	p.Glu310SerfsTer42	p.E310Sfs*42	ENST00000344624		309	aaA/aa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432116	121432116	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	101	881	0	ENST00000257555.6:c.863G>C	p.Gly288Ala	p.G288A	ENST00000257555		288	gGg/gCg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412634	63412634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	96	734	0	ENST00000330258.3:c.533G>A	p.Arg178His	p.R178H	ENST00000330258	NM_152424.3	178	cGt/cAt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660879	227660879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	96	798	1	ENST00000305123.5:c.2576C>T	p.Thr859Met	p.T859M	ENST00000305123	NM_005544.2	859	aCg/aTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343913	118343913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	62	404	0	ENST00000534358.1:c.2039C>T	p.Ser680Leu	p.S680L	ENST00000534358	NM_005933.3	680	tCg/tTg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31449396	31449396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	71	400	2	ENST00000344624.3:c.2813G>A	p.Arg938Gln	p.R938Q	ENST00000344624		938	cGg/cAg																																																																															
MET	4233	MSKCC	GRCh37	7	116418931	116418931	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	59	361	0	ENST00000397752.3:c.3442C>T	p.Arg1148Ter	p.R1148*	ENST00000397752	NM_000245.2	1148	Cga/Tga																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944836	31944836	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148314204		P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	102	724	0	ENST00000340398.3:c.265G>A	p.Val89Ile	p.V89I	ENST00000340398	NM_001013699.2	89	Gtc/Atc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28611358	28611358	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200949858		P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	128	566	0	ENST00000241453.7:c.1273G>A	p.Ala425Thr	p.A425T	ENST00000241453	NM_004119.2	425	Gcc/Acc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15952264	15952264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	130	716	1	ENST00000268712.3:c.6431C>T	p.Ser2144Leu	p.S2144L	ENST00000268712	NM_006311.3	2144	tCg/tTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845839	72845839	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	110	652	2	ENST00000268489.5:c.3628C>T	p.Arg1210Ter	p.R1210*	ENST00000268489	NM_006885.3	1210	Cga/Tga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302983	15302983	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142492710		P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	156	1014	3	ENST00000263388.2:c.467G>A	p.Arg156Gln	p.R156Q	ENST00000263388	NM_000435.2	156	cGa/cAa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37681003	37681003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	105	519	0	ENST00000447079.4:c.3172G>A	p.Glu1058Lys	p.E1058K	ENST00000447079	NM_015083.1	1058	Gaa/Aaa																																																																															
NF1	4763	MSKCC	GRCh37	17	29560133	29560133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	65	326	0	ENST00000358273.4:c.3610C>T	p.Arg1204Trp	p.R1204W	ENST00000358273	NM_001042492.2	1204	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433848	49433848	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201507971		P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	152	1127	1	ENST00000301067.7:c.7705G>A	p.Gly2569Ser	p.G2569S	ENST00000301067	NM_003482.3	2569	Ggc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55210015	55210015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	79	494	1	ENST00000275493.2:c.125G>A	p.Gly42Asp	p.G42D	ENST00000275493	NM_005228.3	42	gGc/gAc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78617605	78617605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	71	356	0	ENST00000306801.3:c.343C>T	p.Pro115Ser	p.P115S	ENST00000306801	NM_020761.2	115	Cca/Tca																																																																															
GATA1	2623	MSKCC	GRCh37	X	48651622	48651622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	114	734	1	ENST00000376670.3:c.788C>T	p.Thr263Met	p.T263M	ENST00000376670	NM_002049.3	263	aCg/aTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528451	157528451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	93	545	1	ENST00000346085.5:c.6176C>T	p.Pro2059Leu	p.P2059L	ENST00000346085	NM_020732.3	2059	cCg/cTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118806	115118806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	82	474	1	ENST00000257566.3:c.535G>A	p.Glu179Lys	p.E179K	ENST00000257566	NM_016569.3	179	Gaa/Aaa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37856539	37856540	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	50	392	2	ENST00000269571.5:c.54dup	p.Gly19ArgfsTer91	p.G19Rfs*91	ENST00000269571		16	-/C																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448552	89448552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	81	483	0	ENST00000336596.2:c.1516G>A	p.Val506Ile	p.V506I	ENST00000336596	NM_005233.5	506	Gta/Ata																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16049809	16049809	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	75	379	0	ENST00000268712.3:c.963del	p.Val322TrpfsTer4	p.V322Wfs*4	ENST00000268712	NM_006311.3	321	aaA/aa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1978316	1978316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	111	934	2	ENST00000382891.5:c.3736G>A	p.Gly1246Ser	p.G1246S	ENST00000382891	NM_133335.3	1246	Ggt/Agt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097604	11097604	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	107	1048	1	ENST00000344626.4:c.788del	p.Pro263GlnfsTer40	p.P263Qfs*40	ENST00000344626	NM_003072.3	262	Ccc/cc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300927	137300927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	127	843	1	ENST00000481739.1:c.572G>A	p.Arg191His	p.R191H	ENST00000481739	NM_002957.4	191	cGc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42054396	42054396	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	46	318	1	ENST00000219905.7:c.7585del	p.Arg2529GlufsTer28	p.R2529Efs*28	ENST00000219905	NM_001164273.1	2527	cAa/ca																																																																															
APC	324	MSKCC	GRCh37	5	112175504	112175504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	53	318	1	ENST00000257430.4:c.4213G>A	p.Val1405Ile	p.V1405I	ENST00000257430	NM_000038.5	1405	Gtt/Att																																																																															
PREX2	80243	MSKCC	GRCh37	8	68989642	68989642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	71	465	1	ENST00000288368.4:c.1580G>A	p.Arg527His	p.R527H	ENST00000288368	NM_024870.2	527	cGc/cAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862712	9862712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	66	475	0	ENST00000330684.3:c.2591G>A	p.Ser864Asn	p.S864N	ENST00000330684	NM_001134407.1	864	aGc/aAc																																																																															
EED	8726	MSKCC	GRCh37	11	85979605	85979605	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	24	313	0	ENST00000263360.6:c.966+2T>C		p.X322_splice	ENST00000263360	NM_003797.3	322																																																																																
MEN1	4221	MSKCC	GRCh37	11	64575113	64575113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	116	639	2	ENST00000337652.1:c.709C>T	p.Arg237Cys	p.R237C	ENST00000337652	NM_130803.2	237	Cgc/Tgc																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225768	26225768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	83	628	1	ENST00000360408.1:c.386G>A	p.Arg129His	p.R129H	ENST00000360408	NM_003532.2	129	cGc/cAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521066	187521066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	62	446	0	ENST00000441802.2:c.12089C>T	p.Pro4030Leu	p.P4030L	ENST00000441802	NM_005245.3	4030	cCg/cTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276215	15276215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	120	760	2	ENST00000263388.2:c.5779G>A	p.Ala1927Thr	p.A1927T	ENST00000263388	NM_000435.2	1927	Gcc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101510	27101510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	120	909	0	ENST00000324856.7:c.4792C>T	p.Arg1598Cys	p.R1598C	ENST00000324856	NM_006015.4	1598	Cgc/Tgc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193181576	193181576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	71	385	0	ENST00000367435.3:c.1123C>T	p.Leu375Phe	p.L375F	ENST00000367435	NM_024529.4	375	Ctt/Ttt																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246498751	246498751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	117	563	0	ENST00000388985.4:c.254G>A	p.Arg85Gln	p.R85Q	ENST00000388985		85	cGg/cAg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972470	32972470	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	61	545	0	ENST00000380152.3:c.9820T>G	p.Leu3274Val	p.L3274V	ENST00000380152		3274	Ttg/Gtg																																																																															
RAD51	5888	MSKCC	GRCh37	15	41001222	41001222	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	93	445	0	ENST00000267868.3:c.344-1G>T		p.X115_splice	ENST00000267868	NM_002875.4	115																																																																																
IGF1R	3480	MSKCC	GRCh37	15	99456302	99456302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	112	365	0	ENST00000268035.6:c.1619G>T	p.Gly540Val	p.G540V	ENST00000268035	NM_000875.3	540	gGg/gTg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14014110	14014110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	99	731	2	ENST00000311895.7:c.88G>A	p.Asp30Asn	p.D30N	ENST00000311895	NM_005236.2	30	Gac/Aac																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14020501	14020501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	26	406	2	ENST00000311895.7:c.472C>T	p.Arg158Cys	p.R158C	ENST00000311895	NM_005236.2	158	Cgt/Tgt																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40460265	40460265	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138484872		P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	35	612	1	ENST00000345506.4:c.1976G>A	p.Arg659Gln	p.R659Q	ENST00000345506	NM_003152.3	659	cGg/cAg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245007	41245007	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	107	641	1	ENST00000357654.3:c.2541G>T	p.Met847Ile	p.M847I	ENST00000357654	NM_007294.3	847	atG/atT																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375319	15375319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	113	756	2	ENST00000263377.2:c.1108G>A	p.Ala370Thr	p.A370T	ENST00000263377	NM_058243.2	370	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214635	36214635	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	109	869	2	ENST00000222270.7:c.3061C>T	p.Arg1021Trp	p.R1021W	ENST00000222270	NM_014727.1	1021	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219063	36219063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	115	803	0	ENST00000222270.7:c.4562G>A	p.Arg1521Gln	p.R1521Q	ENST00000222270	NM_014727.1	1521	cGg/cAg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082356	16082356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	124	973	0	ENST00000281043.3:c.170C>T	p.Pro57Leu	p.P57L	ENST00000281043	NM_005378.4	57	cCc/cTc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47707987	47707987	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	68	432	0	ENST00000233146.2:c.2611A>T	p.Lys871Ter	p.K871*	ENST00000233146	NM_000251.2	871	Aag/Tag																																																																															
MSH2	4436	MSKCC	GRCh37	2	47709936	47709936	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	79	288	0	ENST00000233146.2:c.2653C>T	p.Gln885Ter	p.Q885*	ENST00000233146	NM_000251.2	885	Cag/Tag																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99169355	99169355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	95	489	0	ENST00000074304.5:c.1285G>A	p.Ala429Thr	p.A429T	ENST00000074304	NM_001134224.1	429	Gca/Aca																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661789	227661789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	114	900	1	ENST00000305123.5:c.1666C>T	p.Pro556Ser	p.P556S	ENST00000305123	NM_005544.2	556	Cct/Tct																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021635	31021635	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149449801		P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	105	502	1	ENST00000375687.4:c.1634G>A	p.Arg545His	p.R545H	ENST00000375687	NM_015338.5	545	cGt/cAt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940479	49940480	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	121	1032	0	ENST00000296474.3:c.563_564del	p.Val188GlyfsTer2	p.V188Gfs*2	ENST00000296474	NM_002447.2	188	gTG/g																																																																															
ATR	545	MSKCC	GRCh37	3	142188405	142188405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	77	287	0	ENST00000350721.4:c.6326G>A	p.Arg2109His	p.R2109H	ENST00000350721	NM_001184.3	2109	cGc/cAc																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374668	149374668	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	133	666	0	ENST00000360632.3:c.426C>A	p.Phe142Leu	p.F142L	ENST00000360632	NM_015472.4	142	ttC/ttA																																																																															
TET2	54790	MSKCC	GRCh37	4	106157588	106157588	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	57	310	0	ENST00000380013.4:c.2489T>G	p.Ile830Arg	p.I830R	ENST00000380013	NM_001127208.2	830	aTa/aGa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143235878	143235878	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	76	352	0	ENST00000262992.4:c.410del	p.Pro137ArgfsTer20	p.P137Rfs*20	ENST00000262992	NM_001101669.1	137	cCg/cg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31449403	31449403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	80	434	0	ENST00000344624.3:c.2806C>T	p.His936Tyr	p.H936Y	ENST00000344624		936	Cac/Tac																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839754	27839754	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	105	584	0	ENST00000328488.2:c.340C>A	p.His114Asn	p.H114N	ENST00000328488	NM_003533.2	114	Cac/Aac																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679695	30679696	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	88	675	0	ENST00000376406.3:c.2023_2024del	p.Glu675ThrfsTer10	p.E675Tfs*10	ENST00000376406	NM_014641.2	675	GAa/a																																																																															
CARD11	84433	MSKCC	GRCh37	7	2952945	2952945	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	100	839	0	ENST00000396946.4:c.2995A>G	p.Met999Val	p.M999V	ENST00000396946	NM_032415.4	999	Atg/Gtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55231511	55231511	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	85	521	0	ENST00000275493.2:c.1717G>T	p.Gly573Ter	p.G573*	ENST00000275493	NM_005228.3	573	Gga/Tga																																																																															
CDK6	1021	MSKCC	GRCh37	7	92462493	92462493	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	97	667	0	ENST00000265734.4:c.145A>G	p.Thr49Ala	p.T49A	ENST00000265734	NM_001259.6	49	Acc/Gcc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878091	151878091	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	69	499	0	ENST00000262189.6:c.6854A>G	p.Asp2285Gly	p.D2285G	ENST00000262189	NM_170606.2	2285	gAc/gGc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133244	38133244	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	144	583	0	ENST00000317025.8:c.4229C>A	p.Pro1410His	p.P1410H	ENST00000317025	NM_023034.1	1410	cCc/cAc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133868	38133869	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	129	787	0	ENST00000317025.8:c.4017dup	p.Asp1340ArgfsTer12	p.D1340Rfs*12	ENST00000317025	NM_023034.1	1339	-/A																																																																															
PREX2	80243	MSKCC	GRCh37	8	68995563	68995563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	117	558	0	ENST00000288368.4:c.1967T>C	p.Leu656Pro	p.L656P	ENST00000288368	NM_024870.2	656	cTg/cCg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5077560	5077560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	37	463	0	ENST00000381652.3:c.1972G>A	p.Ala658Thr	p.A658T	ENST00000381652	NM_004972.3	658	Gca/Aca																																																																															
TEK	7010	MSKCC	GRCh37	9	27204908	27204908	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0052791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	32	439	0	ENST00000380036.4:c.2210-1G>A		p.X737_splice	ENST00000380036	NM_000459.3	737																																																																																
BRCA2	675	MSKCC	GRCh37	13	32937518	32937518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	111	439	0	ENST00000380152.3:c.8179G>A	p.Ala2727Thr	p.A2727T	ENST00000380152		2727	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0052819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	154	561	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29528450	29528450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	79	318	0	ENST00000358273.4:c.1207C>T	p.Pro403Ser	p.P403S	ENST00000358273	NM_001042492.2	403	Cct/Tct																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354260	15354260	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	129	610	1	ENST00000263377.2:c.2620A>G	p.Ser874Gly	p.S874G	ENST00000263377	NM_058243.2	874	Agc/Ggc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770570	40770570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	82	333	0	ENST00000373198.4:c.2812G>A	p.Gly938Arg	p.G938R	ENST00000373198	NM_133170.3	938	Ggg/Agg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917576	178917576	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	202	374	0	ENST00000263967.3:c.451G>T	p.Val151Leu	p.V151L	ENST00000263967	NM_006218.2	151	Gtg/Ttg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163488	32163488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	116	421	3	ENST00000375023.3:c.5738G>A	p.Gly1913Asp	p.G1913D	ENST00000375023	NM_004557.3	1913	gGc/gAc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180941	32180941	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	90	437	0	ENST00000375023.3:c.2409G>C	p.Glu803Asp	p.E803D	ENST00000375023	NM_004557.3	803	gaG/gaC																																																																															
AGO2	27161	MSKCC	GRCh37	8	141542217	141542217	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	175	410	0	ENST00000220592.5:c.2506G>T	p.Gly836Trp	p.G836W	ENST00000220592	NM_012154.3	836	Ggg/Tgg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933127	39933127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	123	513	0	ENST00000378444.4:c.1472G>C	p.Gly491Ala	p.G491A	ENST00000378444	NM_001123385.1	491	gGa/gCa																																																																															
ATRX	546	MSKCC	GRCh37	X	76777853	76777853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	90	400	0	ENST00000373344.5:c.6863G>A	p.Arg2288His	p.R2288H	ENST00000373344	NM_000489.3	2288	cGt/cAt																																																																															
ATRX	546	MSKCC	GRCh37	X	76854890	76854890	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	48	390	0	ENST00000373344.5:c.5946A>T	p.Lys1982Asn	p.K1982N	ENST00000373344	NM_000489.3	1982	aaA/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0052869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	294	823	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441821	49441821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	170	546	3	ENST00000301067.7:c.4163G>A	p.Arg1388Gln	p.R1388Q	ENST00000301067	NM_003482.3	1388	cGg/cAg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865041	57865041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	67	759	0	ENST00000228682.2:c.2518G>T	p.Gly840Trp	p.G840W	ENST00000228682	NM_005269.2	840	Ggg/Tgg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120824	115120839	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAGGGCGCCCGGCA	GCCAGGGCGCCCGGCA	-			P-0052869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	164	525	0	ENST00000257566.3:c.167_182del	p.Leu56ProfsTer27	p.L56Pfs*27	ENST00000257566	NM_016569.3	56	cTGCCGGGCGCCCTGGCc/cc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119721071	119721086	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CTGCCGTCCTTGTCTC	CTGCCGTCCTTGTCTC	-			P-0052869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	25	394	0	ENST00000316626.5:c.89_104del	p.Arg30ThrfsTer3	p.R30Tfs*3	ENST00000316626		30	aGAGACAAGGACGGCAGc/ac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984333	72984369	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAGAGCGCCTGAGCCATAAGGAGCTGGGCCTTACCT	AAAGAGCGCCTGAGCCATAAGGAGCTGGGCCTTACCT	CC			P-0052869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	78	279	0	ENST00000268489.5:c.3215_3216+35delinsGG		p.X1072_splice	ENST00000268489	NM_006885.3	1072																																																																																
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0052872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	167	608	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710626	114710627	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0052872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	298	409	0	ENST00000543371.1:c.115_116del	p.Arg39GlyfsTer4	p.R39Gfs*4	ENST00000543371	NM_001198531.1	37	gcAGag/gcag																																																																															
APC	324	MSKCC	GRCh37	5	112155042	112155042	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0052872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	152	386	0	ENST00000257430.4:c.1312+1G>C		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
HIST1H1C	3006	MSKCC	GRCh37	6	26056080	26056080	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	107	420	0	ENST00000343677.2:c.577G>T	p.Val193Leu	p.V193L	ENST00000343677	NM_005319.3	193	Gtg/Ttg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0052874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	12	516	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0052874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	32	667	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31410928	31410928	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	55	635	0	ENST00000344624.3:c.3592G>C	p.Glu1198Gln	p.E1198Q	ENST00000344624		1198	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	46	875	7	ENST00000269305.4:c.532delC	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591104	67591115	+	inframe_deletion	In_Frame_Del	DEL	TTAAACCAGACC	TTAAACCAGACC	-			P-0052876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	23	286	1	ENST00000274335.5:c.1700_1711del	p.Lys567_Leu570del	p.K567_L570del	ENST00000274335		566	aTTAAACCAGACCtt/att																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720855	89720856	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0052876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	31	426	1	ENST00000371953.3:c.1007dupA	p.Tyr336Ter	p.Y336*	ENST00000371953	NM_000314.4	336	tac/tAac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118709	115118709	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0053012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	220	404	0	ENST00000257566.3:c.632A>C	p.Asn211Thr	p.N211T	ENST00000257566	NM_016569.3	211	aAc/aCc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463524	25463524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0053012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	193	613	1	ENST00000264709.3:c.2158C>T	p.Arg720Cys	p.R720C	ENST00000264709	NM_175629.2	720	Cgc/Tgc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926249	112926249	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0053012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	216	447	0	ENST00000351677.2:c.1382C>G	p.Ala461Gly	p.A461G	ENST00000351677	NM_002834.3	461	gCt/gGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023831	27023831	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0053012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	66	266	0	ENST00000324856.7:c.937G>T	p.Gly313Trp	p.G313W	ENST00000324856	NM_006015.4	313	Ggg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579400	7579400	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0053013-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			745	107	795	0	ENST00000269305.4:c.287del	p.Ser96LeufsTer27	p.S96Lfs*27	ENST00000269305	NM_001126112.2	96	tCt/tt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717661	89717661	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0053013-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			419	68	553	0	ENST00000371953.3:c.686C>G	p.Ser229Ter	p.S229*	ENST00000371953	NM_000314.4	229	tCa/tGa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426580	49426580	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0053013-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			910	121	799	0	ENST00000301067.7:c.11908C>T	p.Gln3970Ter	p.Q3970*	ENST00000301067	NM_003482.3	3970	Cag/Tag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89882954	89882954	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0053013-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			247	33	209	0	ENST00000389301.3:c.70G>T	p.Glu24Ter	p.E24*	ENST00000389301	NM_000135.2	24	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	84	438	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584542	48584543	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0051965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	162	516	0	ENST00000342988.3:c.717_718dup	p.Ile240ArgfsTer2	p.I240Rfs*2	ENST00000342988	NM_005359.5	239	cag/cAGag																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197321	26197321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	216	787	1	ENST00000356476.2:c.158G>A	p.Arg53His	p.R53H	ENST00000356476		53	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0052008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			333	465	520	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980862	40980862	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			464	288	619	1	ENST00000373198.4:c.1624G>T	p.Val542Leu	p.V542L	ENST00000373198	NM_133170.3	542	Gtg/Ttg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9984856	9984856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	293	608	1	ENST00000330684.3:c.1109G>A	p.Arg370Gln	p.R370Q	ENST00000330684	NM_001134407.1	370	cGg/cAg																																																																															
EP300	2033	MSKCC	GRCh37	22	41574931	41574931	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			170	680	665	0	ENST00000263253.7:c.7216C>G	p.Leu2406Val	p.L2406V	ENST00000263253	NM_001429.3	2406	Ctc/Gtc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259268	89259268	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			257	157	465	0	ENST00000336596.2:c.412C>A	p.His138Asn	p.H138N	ENST00000336596	NM_005233.5	138	Cat/Aat																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149290708	149290708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			859	65	720	2	ENST00000360632.3:c.511G>A	p.Ala171Thr	p.A171T	ENST00000360632	NM_015472.4	171	Gcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0052564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	196	409	9	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0052564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	458	728	18	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939408	36939408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	336	854	32	ENST00000361632.4:c.442C>T	p.Pro148Ser	p.P148S	ENST00000361632		148	Cct/Tct																																																																															
RAD50	10111	MSKCC	GRCh37	5	131925341	131925341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	21	199	1	ENST00000265335.6:c.1264G>A	p.Glu422Lys	p.E422K	ENST00000265335		422	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	292	761	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	431	1126	0	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30314572	30314572	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	247	771	1	ENST00000262643.3:c.1121G>T	p.Arg374Leu	p.R374L	ENST00000262643	NM_001238.2	374	cGa/cTa																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750502	41750502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	207	751	1	ENST00000226382.2:c.126C>A	p.Phe42Leu	p.F42L	ENST00000226382	NM_003924.3	42	ttC/ttA																																																																															
HGF	3082	MSKCC	GRCh37	7	81386569	81386569	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	209	661	0	ENST00000222390.5:c.418G>T	p.Val140Leu	p.V140L	ENST00000222390	NM_000601.4	140	Gta/Tta																																																																															
NF1	4763	MSKCC	GRCh37	17	29587386	29587386	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	167	408	0	ENST00000358273.4:c.4431-1G>T		p.X1477_splice	ENST00000358273	NM_001042492.2	1477																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52685769	52685769	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	188	582	0	ENST00000394830.3:c.703C>T	p.Gln235Ter	p.Q235*	ENST00000394830	NM_018313.4	235	Cag/Tag																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206658354	206658354	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs52817862		P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	132	840	1	ENST00000367120.3:c.1448C>T	p.Thr483Met	p.T483M	ENST00000367120	NM_014002.3	483	aCg/aTg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538254	9538254	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	197	608	0	ENST00000353224.5:c.1743+1del		p.X581_splice	ENST00000353224	NM_177990.2	581																																																																																
AMER1	139285	MSKCC	GRCh37	X	63412698	63412698	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	105	853	1	ENST00000330258.3:c.469G>T	p.Glu157Ter	p.E157*	ENST00000330258	NM_152424.3	157	Gag/Tag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464892	120464892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	96	679	0	ENST00000256646.2:c.5180G>T	p.Arg1727Leu	p.R1727L	ENST00000256646	NM_024408.3	1727	cGt/cTt																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112771377	112771377	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	199	617	0	ENST00000369452.4:c.1550A>G	p.Glu517Gly	p.E517G	ENST00000369452	NM_007373.3	517	gAg/gGg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343345	118343345	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	82	491	0	ENST00000534358.1:c.1471C>T	p.Gln491Ter	p.Q491*	ENST00000534358	NM_005933.3	491	Cag/Tag																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582002	95582002	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	82	368	0	ENST00000343455.3:c.1907+2T>A		p.X636_splice	ENST00000343455	NM_177438.2	636																																																																																
NTRK3	4916	MSKCC	GRCh37	15	88726721	88726721	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	195	609	1	ENST00000360948.2:c.324-1G>T		p.X108_splice	ENST00000360948	NM_001012338.2	108																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81819742	81819742	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	399	831	0	ENST00000359376.3:c.148C>G	p.Arg50Gly	p.R50G	ENST00000359376	NM_002661.3	50	Cgg/Ggg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81965158	81965158	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs3189935		P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	421	883	0	ENST00000359376.3:c.2638C>G	p.Gln880Glu	p.Q880E	ENST00000359376	NM_002661.3	880	Cag/Gag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696656	47696656	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	321	648	0	ENST00000347630.2:c.292G>T	p.Val98Phe	p.V98F	ENST00000347630	NM_001007230.1	98	Gtt/Ttt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46281275	46281275	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	181	477	0	ENST00000371998.3:c.4072C>G	p.Gln1358Glu	p.Q1358E	ENST00000371998		1358	Cag/Gag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691911	30691911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	179	510	0	ENST00000359013.4:c.488G>T	p.Cys163Phe	p.C163F	ENST00000359013	NM_001024847.2	163	tGt/tTt																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119631628	119631628	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	140	417	0	ENST00000316626.5:c.638A>T	p.Asn213Ile	p.N213I	ENST00000316626		213	aAt/aTt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138452282	138452282	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	159	348	0	ENST00000289153.2:c.973-2A>T		p.X325_splice	ENST00000289153	NM_006219.2	325																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31449478	31449478	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	213	526	0	ENST00000344624.3:c.2731del	p.Asp911IlefsTer35	p.D911Ifs*35	ENST00000344624		911	Gat/at																																																																															
MYC	4609	MSKCC	GRCh37	8	128752778	128752778	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	98	398	0	ENST00000377970.2:c.939G>C	p.Lys313Asn	p.K313N	ENST00000377970	NM_002467.4	313	aaG/aaC																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911553	101911553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	112	540	0	ENST00000374994.4:c.1478C>T	p.Ser493Leu	p.S493L	ENST00000374994	NM_004612.2	493	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0052790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	139	518	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	143	474	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391214	89391214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	88	507	0	ENST00000336596.2:c.1280C>T	p.Ala427Val	p.A427V	ENST00000336596	NM_005233.5	427	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0052790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	208	1371	5	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
ALK	238	MSKCC	GRCh37	2	29443618	29443618	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200585833		P-0052790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	162	1074	3	ENST00000389048.3:c.3599C>T	p.Ala1200Val	p.A1200V	ENST00000389048	NM_004304.4	1200	gCg/gTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100286	8100286	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1241255776		P-0052790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	60	1201	0	ENST00000346208.3:c.260C>T	p.Pro87Leu	p.P87L	ENST00000346208		87	cCg/cTg																																																																															
SRC	6714	MSKCC	GRCh37	20	36026110	36026110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	124	1508	0	ENST00000358208.4:c.712G>A	p.Asp238Asn	p.D238N	ENST00000358208		238	Gat/Aat																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	211	500	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	248	711	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	54	1003	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	317	942	4	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	150	369	1	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027422	48027422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	196	435	0	ENST00000234420.5:c.2300C>T	p.Thr767Ile	p.T767I	ENST00000234420	NM_000179.2	767	aCt/aTt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	305	775	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	209	561	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	107	258	0	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149433745	149433745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	334	1024	1	ENST00000286301.3:c.2806G>A	p.Gly936Ser	p.G936S	ENST00000286301	NM_005211.3	936	Ggc/Agc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821890	72821890	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	222	582	0	ENST00000268489.5:c.10285del	p.Arg3429ValfsTer56	p.R3429Vfs*56	ENST00000268489	NM_006885.3	3429	Cgt/gt																																																																															
TP63	8626	MSKCC	GRCh37	3	189582168	189582168	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121908835		P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	240	560	1	ENST00000264731.3:c.727C>T	p.Arg243Trp	p.R243W	ENST00000264731	NM_003722.4	243	Cgg/Tgg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89815155	89815155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	342	923	1	ENST00000389301.3:c.3260C>T	p.Ser1087Leu	p.S1087L	ENST00000389301	NM_000135.2	1087	tCg/tTg																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165602	118165602	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs921184290		P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	32	517	0	ENST00000369448.3:c.112C>T	p.Arg38Ter	p.R38*	ENST00000369448	NM_017709.3	38	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108115727	108115727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	127	250	0	ENST00000278616.4:c.875C>T	p.Pro292Leu	p.P292L	ENST00000278616	NM_000051.3	292	cCg/cTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098912	47098912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	59	707	0	ENST00000409792.3:c.6362G>A	p.Arg2121His	p.R2121H	ENST00000409792	NM_014159.6	2121	cGc/cAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	256	680	1	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473648	67473648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	272	856	0	ENST00000327367.4:c.728G>A	p.Arg243His	p.R243H	ENST00000327367	NM_005902.3	243	cGc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261038	16261038	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144525015		P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	225	721	4	ENST00000375759.3:c.8303C>T	p.Ala2768Val	p.A2768V	ENST00000375759	NM_015001.2	2768	gCg/gTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76938230	76938230	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	274	648	3	ENST00000373344.5:c.2518delA	p.Arg840GlufsTer29	p.R840Efs*29	ENST00000373344	NM_000489.3	840	Aga/ga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916124	9916124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	168	543	0	ENST00000330684.3:c.2165C>T	p.Thr722Met	p.T722M	ENST00000330684	NM_001134407.1	722	aCg/aTg																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839700	27839700	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	245	653	0	ENST00000328488.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000328488	NM_003533.2	132	Cga/Tga																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944381	131944382	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	131	234	5	ENST00000265335.6:c.2801dup	p.Asn934LysfsTer10	p.N934Kfs*10	ENST00000265335		931	-/A																																																																															
YAP1	10413	MSKCC	GRCh37	11	102076740	102076740	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	303	750	4	ENST00000282441.5:c.919C>T	p.Arg307Ter	p.R307*	ENST00000282441	NM_001130145.2	307	Cga/Tga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47158212	47158212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	227	465	2	ENST00000409792.3:c.4487G>A	p.Arg1496Gln	p.R1496Q	ENST00000409792	NM_014159.6	1496	cGa/cAa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435971	56435971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	186	702	0	ENST00000407977.2:c.1166G>A	p.Arg389His	p.R389H	ENST00000407977		389	cGc/cAc																																																																															
TET1	80312	MSKCC	GRCh37	10	70451546	70451546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	306	716	0	ENST00000373644.4:c.6386C>T	p.Ala2129Val	p.A2129V	ENST00000373644	NM_030625.2	2129	gCg/gTg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164875	36164875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	248	1123	0	ENST00000300305.3:c.1000C>T	p.Arg334Cys	p.R334C	ENST00000300305		334	Cgc/Tgc																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45657002	45657002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	310	766	0	ENST00000407780.3:c.154G>A	p.Val52Ile	p.V52I	ENST00000407780	NM_001283052.1	52	Gta/Ata																																																																															
NSD1	64324	MSKCC	GRCh37	5	176687001	176687001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	210	484	1	ENST00000439151.2:c.4978C>T	p.Arg1660Cys	p.R1660C	ENST00000439151	NM_022455.4	1660	Cgc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827892	40827892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	198	654	3	ENST00000373198.4:c.2536G>A	p.Val846Ile	p.V846I	ENST00000373198	NM_133170.3	846	Gtc/Atc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912094	114912094	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	195	520	0	ENST00000543371.1:c.1164G>A	p.Trp388Ter	p.W388*	ENST00000543371	NM_001198531.1	388	tgG/tgA																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	75	219	0				ENST00000310581	NM_198253.2																																																																																	
PIK3CD	5293	MSKCC	GRCh37	1	9780277	9780277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	223	981	0	ENST00000377346.4:c.1447G>A	p.Val483Met	p.V483M	ENST00000377346	NM_005026.3	483	Gtg/Atg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376268	15376268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	186	857	0	ENST00000263377.2:c.746C>T	p.Thr249Met	p.T249M	ENST00000263377	NM_058243.2	249	aCg/aTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057304	180057304	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140347743		P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	309	1027	1	ENST00000261937.6:c.434C>T	p.Thr145Met	p.T145M	ENST00000261937	NM_182925.4	145	aCg/aTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180041121	180041121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	358	1320	0	ENST00000261937.6:c.3278C>T	p.Thr1093Met	p.T1093M	ENST00000261937	NM_182925.4	1093	aCg/aTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440951	56440951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	263	817	3	ENST00000407977.2:c.386C>T	p.Ala129Val	p.A129V	ENST00000407977		129	gCg/gTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47035930	47035930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	52	942	2	ENST00000329236.7:c.377C>T	p.Ser126Leu	p.S126L	ENST00000329236	NM_001204466.1	126	tCg/tTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3808001	3808001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	244	605	0	ENST00000262367.5:c.3418C>T	p.Arg1140Trp	p.R1140W	ENST00000262367	NM_004380.2	1140	Cgg/Tgg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5072540	5072540	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	236	401	0	ENST00000381652.3:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000381652	NM_004972.3	564	Cga/Tga																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469073	25469073	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200845575		P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	310	991	2	ENST00000264709.3:c.1385C>T	p.Ala462Val	p.A462V	ENST00000264709	NM_175629.2	462	gCg/gTg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740749	58740749	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	316	616	0	ENST00000305921.3:c.1654C>T	p.Arg552Ter	p.R552*	ENST00000305921	NM_003620.3	552	Cga/Tga																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317533	1317533	+	downstream_gene_variant	3'Flank	SNP	C	C	T	rs199794164		P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	293	748	1				ENST00000381566																																																																																		
PIK3C3	5289	MSKCC	GRCh37	18	39617690	39617690	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141329274		P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	192	413	0	ENST00000262039.4:c.1874C>T	p.Thr625Met	p.T625M	ENST00000262039	NM_002647.2	625	aCg/aTg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655328	45655328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	368	1090	0	ENST00000407780.3:c.524C>T	p.Thr175Met	p.T175M	ENST00000407780	NM_001283052.1	175	aCg/aTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346961	89346961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	144	616	2	ENST00000301030.4:c.5989G>A	p.Ala1997Thr	p.A1997T	ENST00000301030	NM_001256183.1	1997	Gcg/Acg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302857	15302857	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140914494		P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	59	1207	1	ENST00000263388.2:c.593C>T	p.Ala198Val	p.A198V	ENST00000263388	NM_000435.2	198	gCg/gTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132498	11132498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	77	1103	0	ENST00000344626.4:c.2714G>A	p.Arg905His	p.R905H	ENST00000344626	NM_003072.3	905	cGc/cAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922222	39922222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	36	592	0	ENST00000378444.4:c.3950C>T	p.Pro1317Leu	p.P1317L	ENST00000378444	NM_001123385.1	1317	cCg/cTg																																																																															
TEK	7010	MSKCC	GRCh37	9	27169624	27169624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	291	745	0	ENST00000380036.4:c.625C>T	p.Arg209Trp	p.R209W	ENST00000380036	NM_000459.3	209	Cgg/Tgg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434581	99434581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	52	790	1	ENST00000268035.6:c.668C>T	p.Ala223Val	p.A223V	ENST00000268035	NM_000875.3	223	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434270	49434270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	431	1216	1	ENST00000301067.7:c.7283G>A	p.Arg2428Gln	p.R2428Q	ENST00000301067	NM_003482.3	2428	cGg/cAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788626	3788626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	259	535	0	ENST00000262367.5:c.4328G>A	p.Arg1443His	p.R1443H	ENST00000262367	NM_004380.2	1443	cGt/cAt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751225	57751225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	37	372	1	ENST00000274289.3:c.1642G>A	p.Ala548Thr	p.A548T	ENST00000274289	NM_006622.3	548	Gca/Aca																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022694	31022694	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	42	788	2	ENST00000375687.4:c.2179G>T	p.Glu727Ter	p.E727*	ENST00000375687	NM_015338.5	727	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49442932	49442932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	262	788	2	ENST00000301067.7:c.3976C>T	p.Arg1326Trp	p.R1326W	ENST00000301067	NM_003482.3	1326	Cgg/Tgg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020396	69020396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	275	650	0	ENST00000288368.4:c.2768C>A	p.Ser923Tyr	p.S923Y	ENST00000288368	NM_024870.2	923	tCt/tAt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937223	36937223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	316	1054	0	ENST00000361632.4:c.1096G>A	p.Gly366Arg	p.G366R	ENST00000361632		366	Gga/Aga																																																																															
EP300	2033	MSKCC	GRCh37	22	41543892	41543892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	305	680	0	ENST00000263253.7:c.2183G>A	p.Arg728Gln	p.R728Q	ENST00000263253	NM_001429.3	728	cGg/cAg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11199706	11199706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	55	672	0	ENST00000361445.4:c.4882C>T	p.Arg1628Cys	p.R1628C	ENST00000361445	NM_004958.3	1628	Cgt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258772	16258772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	235	705	0	ENST00000375759.3:c.6037G>A	p.Ala2013Thr	p.A2013T	ENST00000375759	NM_015001.2	2013	Gcc/Acc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262334	16262334	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	97	463	0	ENST00000375759.3:c.9599A>G	p.His3200Arg	p.H3200R	ENST00000375759	NM_015001.2	3200	cAt/cGt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63829468	63829468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	207	399	1	ENST00000279873.7:c.1111C>T	p.Arg371Cys	p.R371C	ENST00000279873	NM_032199.2	371	Cgc/Tgc																																																																															
TET1	80312	MSKCC	GRCh37	10	70333374	70333374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	315	892	0	ENST00000373644.4:c.1279C>A	p.Pro427Thr	p.P427T	ENST00000373644	NM_030625.2	427	Cca/Aca																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123325026	123325026	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	78	757	0	ENST00000358487.5:c.302A>G	p.Asp101Gly	p.D101G	ENST00000358487	NM_000141.4	101	gAc/gGc																																																																															
CCND1	595	MSKCC	GRCh37	11	69457976	69457976	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	193	531	0	ENST00000227507.2:c.376A>G	p.Ile126Val	p.I126V	ENST00000227507	NM_053056.2	126	Atc/Gtc																																																																															
ATM	472	MSKCC	GRCh37	11	108188228	108188228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	140	273	0	ENST00000278616.4:c.6327G>T	p.Trp2109Cys	p.W2109C	ENST00000278616	NM_000051.3	2109	tgG/tgT																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495532	56495532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	45	739	0	ENST00000267101.3:c.3722G>A	p.Cys1241Tyr	p.C1241Y	ENST00000267101	NM_001982.3	1241	tGc/tAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437385	110437385	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	53	228	0	ENST00000375856.3:c.1016T>C	p.Val339Ala	p.V339A	ENST00000375856	NM_003749.2	339	gTg/gCg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2131695	2131695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	313	1105	1	ENST00000219476.3:c.3710C>T	p.Ala1237Val	p.A1237V	ENST00000219476	NM_000548.3	1237	gCg/gTg																																																																															
RARA	5914	MSKCC	GRCh37	17	38511586	38511586	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	307	975	0	ENST00000254066.5:c.1084T>C	p.Tyr362His	p.Y362H	ENST00000254066	NM_000964.3	362	Tac/Cac																																																																															
EZH1	2145	MSKCC	GRCh37	17	40876343	40876343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	254	664	1	ENST00000428826.2:c.346C>A	p.Pro116Thr	p.P116T	ENST00000428826		116	Cct/Act																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622124	1622124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	276	1153	1	ENST00000344749.5:c.751C>T	p.Pro251Ser	p.P251S	ENST00000344749	NM_001136139.2	251	Ccc/Tcc																																																																															
GNA11	2767	MSKCC	GRCh37	19	3113454	3113454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	257	807	1	ENST00000078429.4:c.448G>A	p.Glu150Lys	p.E150K	ENST00000078429	NM_002067.2	150	Gag/Aag																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905082	50905082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141579552		P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	283	1098	2	ENST00000440232.2:c.364G>A	p.Val122Met	p.V122M	ENST00000440232	NM_002691.3	122	Gtg/Atg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248530	212248530	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	201	640	0	ENST00000342788.4:c.3737G>C	p.Ser1246Thr	p.S1246T	ENST00000342788	NM_005235.2	1246	aGc/aCc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662775	227662775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	369	1049	0	ENST00000305123.5:c.680G>A	p.Arg227His	p.R227H	ENST00000305123	NM_005544.2	227	cGt/cAt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31385062	31385062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	296	977	0	ENST00000328111.2:c.1447G>A	p.Glu483Lys	p.E483K	ENST00000328111	NM_006892.3	483	Gag/Aag																																																																															
ERG	2078	MSKCC	GRCh37	21	39817454	39817455	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGACGC			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	40	691	1	ENST00000288319.7:c.103_108dup	p.Ala35_Ser36dup	p.A35_S36dup	ENST00000288319	NM_182918.3	35	-/GCGTCC																																																																															
EP300	2033	MSKCC	GRCh37	22	41573336	41573336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	294	1040	2	ENST00000263253.7:c.5621A>G	p.Gln1874Arg	p.Q1874R	ENST00000263253	NM_001429.3	1874	cAg/cGg																																																																															
EP300	2033	MSKCC	GRCh37	22	41574268	41574268	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	259	822	0	ENST00000263253.7:c.6553C>T	p.Arg2185Ter	p.R2185*	ENST00000263253	NM_001429.3	2185	Cga/Tga																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71019918	71019918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	143	305	2	ENST00000318789.4:c.1691C>T	p.Ala564Val	p.A564V	ENST00000318789	NM_032682.5	564	gCc/gTc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1962831	1962831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	234	612	1	ENST00000382891.5:c.3325G>A	p.Ala1109Thr	p.A1109T	ENST00000382891	NM_133335.3	1109	Gca/Aca																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748144	41748144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	122	434	0	ENST00000226382.2:c.625G>A	p.Gly209Arg	p.G209R	ENST00000226382	NM_003924.3	209	Ggg/Agg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160667	56160667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	212	477	0	ENST00000399503.3:c.941C>T	p.Ala314Val	p.A314V	ENST00000399503	NM_005921.1	314	gCc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112175840	112175840	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	134	301	0	ENST00000257430.4:c.4549C>T	p.Gln1517Ter	p.Q1517*	ENST00000257430	NM_000038.5	1517	Cag/Tag																																																																															
RAD50	10111	MSKCC	GRCh37	5	131953880	131953880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	218	340	0	ENST00000265335.6:c.3283C>T	p.Pro1095Ser	p.P1095S	ENST00000265335		1095	Cca/Tca																																																																															
STK19	8859	MSKCC	GRCh37	6	31940087	31940087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	57	889	0	ENST00000375331.2:c.229C>T	p.Pro77Ser	p.P77S	ENST00000375331	NM_004197.1	77	Ccc/Tcc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815720	32815721	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	343	1059	0	ENST00000354258.4:c.1895_1896del	p.Tyr632Ter	p.Y632*	ENST00000354258	NM_000593.5	632	tAT/t																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816538	32816538	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	376	1036	1	ENST00000354258.4:c.1637del	p.Pro546LeufsTer9	p.P546Lfs*9	ENST00000354258	NM_000593.5	546	cCt/ct																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289611	33289611	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149910332		P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	275	778	1	ENST00000374542.5:c.92C>T	p.Ala31Val	p.A31V	ENST00000374542	NM_001141970.1	31	gCg/gTg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200414	138200414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	320	691	0	ENST00000237289.4:c.1832G>A	p.Gly611Asp	p.G611D	ENST00000237289	NM_001270507.1	611	gGc/gAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69028064	69028064	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	269	581	0	ENST00000288368.4:c.3223A>G	p.Asn1075Asp	p.N1075D	ENST00000288368	NM_024870.2	1075	Aat/Gat																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128321915	128321915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	239	575	2	ENST00000265960.3:c.845G>A	p.Arg282Gln	p.R282Q	ENST00000265960	NM_001006617.1	282	cGa/cAa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393422	139393422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	326	1115	1	ENST00000277541.6:c.6109G>A	p.Ala2037Thr	p.A2037T	ENST00000277541	NM_017617.3	2037	Gcc/Acc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321322	1321322	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	47	755	0	ENST00000381566.1:c.433del	p.Asp145IlefsTer?	p.D145Ifs*?	ENST00000381566		145	Gat/at																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943701	71943701	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1142	328	1108	0	ENST00000298229.2:c.1744C>G	p.Leu582Val	p.L582V	ENST00000298229	NM_001567.3	582	Ctg/Gtg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245471	46245471	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	141	517	0	ENST00000334344.6:c.3565C>T	p.Gln1189Ter	p.Q1189*	ENST00000334344	NM_152641.2	1189	Cag/Tag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434682	110434682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	384	902	0	ENST00000375856.3:c.3719G>A	p.Arg1240His	p.R1240H	ENST00000375856	NM_003749.2	1240	cGc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42032348	42032348	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	210	767	0	ENST00000219905.7:c.4532C>G	p.Thr1511Arg	p.T1511R	ENST00000219905	NM_001164273.1	1511	aCa/aGa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843480	3843480	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0052793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	532	706	0	ENST00000262367.5:c.1123G>T	p.Gly375Ter	p.G375*	ENST00000262367	NM_004380.2	375	Gga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0052793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	382	1171	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29509684	29509684	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0052793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	92	443	0	ENST00000358273.4:c.888+1G>T		p.X296_splice	ENST00000358273	NM_001042492.2	296																																																																																
XPO1	7514	MSKCC	GRCh37	2	61729417	61729417	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	193	443	0	ENST00000401558.2:c.330T>G	p.Ile110Met	p.I110M	ENST00000401558	NM_003400.3	110	atT/atG																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198270043	198270043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	114	510	0	ENST00000335508.6:c.1393C>T	p.Pro465Ser	p.P465S	ENST00000335508	NM_012433.2	465	Cca/Tca																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794389	242794389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	135	1403	0	ENST00000334409.5:c.553G>A	p.Val185Ile	p.V185I	ENST00000334409	NM_005018.2	185	Gtc/Atc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205046	128205046	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	313	1338	0	ENST00000341105.2:c.395G>C	p.Gly132Ala	p.G132A	ENST00000341105	NM_032638.4	132	gGa/gCa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185165660	185165660	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0052793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	174	635	0	ENST00000265026.3:c.935C>A	p.Ser312Ter	p.S312*	ENST00000265026	NM_004721.4	312	tCa/tAa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31511253	31511253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	140	782	2	ENST00000344624.3:c.1321C>T	p.Leu441Phe	p.L441F	ENST00000344624		441	Ctt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0052798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	110	1171	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0052798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	144	525	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974793	21974799	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGCTC	AAGGCTC	-			P-0052798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	13	196	0	ENST00000304494.5:c.28_34del	p.Glu10ArgfsTer14	p.E10Rfs*14	ENST00000304494	NM_000077.4	10	GAGCCTTcg/cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0052800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	97	433	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0052800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	118	795	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735470	40735470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	116	757	0	ENST00000373198.4:c.3403G>A	p.Val1135Met	p.V1135M	ENST00000373198	NM_133170.3	1135	Gtg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416416	49416416	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs398123734		P-0052800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	90	666	0	ENST00000301067.7:c.16295G>A	p.Arg5432Gln	p.R5432Q	ENST00000301067	NM_003482.3	5432	cGg/cAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974701	21974701	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	49	443	0	ENST00000304494.5:c.126T>G	p.Asn42Lys	p.N42K	ENST00000304494	NM_000077.4	42	aaT/aaG																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273989	10273989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	73	1013	0	ENST00000330684.3:c.280C>T	p.Arg94Cys	p.R94C	ENST00000330684	NM_001134407.1	94	Cgc/Tgc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89851361	89851361	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	39	600	0	ENST00000389301.3:c.1371del	p.Ser458AlafsTer68	p.S458Afs*68	ENST00000389301	NM_000135.2	457	ggG/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0052802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3345	80	476	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0052802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	594	872	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173830	112173831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	107	395	0	ENST00000257430.4:c.2544dupA	p.Asp849ArgfsTer2	p.D849Rfs*2	ENST00000257430	NM_000038.5	847	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0052802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	87	411	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261683	16261683	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149575630		P-0052802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	86	742	1	ENST00000375759.3:c.8948C>T	p.Thr2983Met	p.T2983M	ENST00000375759	NM_015001.2	2983	aCg/aTg																																																																															
RET	5979	MSKCC	GRCh37	10	43615045	43615045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	159	1124	3	ENST00000355710.3:c.2459G>A	p.Arg820His	p.R820H	ENST00000355710	NM_020975.4	820	cGc/cAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98242716	98242716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	47	610	2	ENST00000331920.6:c.901G>A	p.Asp301Asn	p.D301N	ENST00000331920	NM_000264.3	301	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0052817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	247	431	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864328	57864328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201538749		P-0052817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	166	491	0	ENST00000228682.2:c.1805C>T	p.Ser602Leu	p.S602L	ENST00000228682	NM_005269.2	602	tCg/tTg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2213952	2213952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	341	499	0	ENST00000326181.6:c.31C>T	p.Arg11Cys	p.R11C	ENST00000326181	NM_032271.2	11	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175517	112175518	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGCAGTGGA			P-0052817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	77	214	0	ENST00000257430.4:c.4230_4239dup	p.Val1414GlnfsTer12	p.V1414Qfs*12	ENST00000257430	NM_000038.5	1409	cca/ccATGCAGTGGAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0052820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	28	350	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579716	7579716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	102	481	1	ENST00000269305.4:c.80delC	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	27	cCt/ct																																																																															
RB1	5925	MSKCC	GRCh37	13	48954327	48954328	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0052820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	19	200	0	ENST00000267163.4:c.1450_1451del	p.Met484ValfsTer8	p.M484Vfs*8	ENST00000267163	NM_000321.2	483	cAT/c																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111794	56111794	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	42	7	0	ENST00000399503.3:c.394G>C	p.Asp132His	p.D132H	ENST00000399503	NM_005921.1	132	Gac/Cac																																																																															
STK11	6794	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	220	472	0	ENST00000326873.7:c.709G>C	p.Asp237His	p.D237H	ENST00000326873	NM_000455.4	237	Gac/Cac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993741	72993741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	164	376	0	ENST00000268489.5:c.304G>A	p.Ala102Thr	p.A102T	ENST00000268489	NM_006885.3	102	Gcg/Acg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412723	63412745	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCACAGATGTCTTACATCTGG	AGCCACAGATGTCTTACATCTGG	-			P-0052820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	60	211	0	ENST00000330258.3:c.422_444del	p.Ser141TrpfsTer9	p.S141Wfs*9	ENST00000330258	NM_152424.3	141	tCCAGATGTAAGACATCTGTGGCT/t																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453136	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0052822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	52	168	0	ENST00000288602.6:c.1799_1801del	p.Val600_Lys601delinsGlu	p.V600_K601delinsE	ENST00000288602	NM_004333.4	600	gTGAaa/gaa																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643446	38643446	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	32	296	0	ENST00000299084.4:c.916A>G	p.Lys306Glu	p.K306E	ENST00000299084	NM_152594.2	306	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577505	7577506	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTTCC			P-0052822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	72	396	0	ENST00000269305.4:c.771_775dup	p.Asp259GlyfsTer88	p.D259Gfs*88	ENST00000269305	NM_001126112.2	259	gac/gGGAAGac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578218	7578218	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0052824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	23	457	0	ENST00000269305.4:c.631A>C	p.Thr211Pro	p.T211P	ENST00000269305	NM_001126112.2	211	Act/Cct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0052827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	1447	297	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0052827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	323	424	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
KIT	3815	MSKCC	GRCh37	4	55564570	55564570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	95	341	0	ENST00000288135.5:c.458G>A	p.Gly153Glu	p.G153E	ENST00000288135	NM_000222.2	153	gGg/gAg																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117695938	117695938	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142973937		P-0052827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	72	417	1	ENST00000369458.3:c.499C>T	p.Arg167Trp	p.R167W	ENST00000369458	NM_024626.3	167	Cgg/Tgg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932050	39932050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	45	208	0	ENST00000378444.4:c.2549G>A	p.Arg850His	p.R850H	ENST00000378444	NM_001123385.1	850	cGt/cAt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437871	110437871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7	36	71	0	ENST00000375856.3:c.530C>T	p.Ala177Val	p.A177V	ENST00000375856	NM_003749.2	177	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	139	653	0	ENST00000269305.4:c.842A>G	p.Asp281Gly	p.D281G	ENST00000269305	NM_001126112.2	281	gAc/gGc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876472	35876472	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	89	443	0	ENST00000303115.3:c.1264C>T	p.Gln422Ter	p.Q422*	ENST00000303115	NM_002185.3	422	Caa/Taa																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792731	33792732	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCGGGT			P-0052882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	18	55	2	ENST00000498907.2:c.584_589dupACCCGC	p.His195_Pro196dup	p.H195_P196dup	ENST00000498907	NM_004364.3	195	ccg/cACCCGCcg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879796	37879798	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0052882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	1569	520	0	ENST00000269571.5:c.2092_2094del	p.Glu698del	p.E698del	ENST00000269571		697	gtGGAg/gtg																																																																															
YAP1	10413	MSKCC	GRCh37	11	102098286	102098286	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0052882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	67	367	0	ENST00000282441.5:c.1250T>G	p.Leu417Arg	p.L417R	ENST00000282441	NM_001130145.2	417	cTg/cGg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89871715	89871715	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	70	493	0	ENST00000389301.3:c.682G>T	p.Ala228Ser	p.A228S	ENST00000389301	NM_000135.2	228	Gct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577503	7577508	+	inframe_deletion	In_Frame_Del	DEL	AGTCTT	AGTCTT	-			P-0052882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	143	521	0	ENST00000269305.4:c.773_778del	p.Glu258_Ser260delinsAla	p.E258_S260delinsA	ENST00000269305	NM_001126112.2	258	gAAGACTcc/gcc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0052908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	81	482	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	141	880	1	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274897	41274897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	74	462	0	ENST00000349496.5:c.1147T>C	p.Trp383Arg	p.W383R	ENST00000349496	NM_001904.3	383	Tgg/Cgg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653803	89653810	+	frameshift_variant	Frame_Shift_Del	DEL	CTATGGGA	CTATGGGA	-			P-0052908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			13	15	345	0	ENST00000371953.3:c.101_108del	p.Ala34ValfsTer7	p.A34Vfs*7	ENST00000371953	NM_000314.4	34	gCTATGGGA/g																																																																															
KDM5A	5927	MSKCC	GRCh37	12	465682	465682	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	93	528	0	ENST00000399788.2:c.694A>G	p.Arg232Gly	p.R232G	ENST00000399788	NM_001042603.1	232	Aga/Gga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424780	49424780	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0052908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	279	703	0	ENST00000301067.7:c.13567A>T	p.Lys4523Ter	p.K4523*	ENST00000301067	NM_003482.3	4523	Aag/Tag																																																																															
CYLD	1540	MSKCC	GRCh37	16	50785814	50785814	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	12	366	0	ENST00000398568.2:c.804C>G	p.Asp268Glu	p.D268E	ENST00000398568	NM_001042412.1	268	gaC/gaG																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984427	72984427	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0052908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	67	705	1	ENST00000268489.5:c.3157G>T	p.Glu1053Ter	p.E1053*	ENST00000268489	NM_006885.3	1053	Gag/Tag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2227037	2227037	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	110	644	0	ENST00000398665.3:c.4517G>T	p.Gly1506Val	p.G1506V	ENST00000398665	NM_032482.2	1506	gGc/gTc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225343033	225343033	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0052908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	52	510	0	ENST00000264414.4:c.2059G>T	p.Glu687Ter	p.E687*	ENST00000264414	NM_003590.4	687	Gag/Tag																																																																															
NF2	4771	MSKCC	GRCh37	22	30074284	30074284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	76	420	1	ENST00000338641.4:c.1546C>T	p.Arg516Trp	p.R516W	ENST00000338641	NM_000268.3	516	Cgg/Tgg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39021158	39021158	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	28	354	0	ENST00000357387.3:c.178C>G	p.Leu60Val	p.L60V	ENST00000357387	NM_152756.3	60	Ctg/Gtg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287622	33287622	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	91	542	0	ENST00000374542.5:c.1475G>T	p.Gly492Val	p.G492V	ENST00000374542	NM_001141970.1	492	gGa/gTa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367288	50367288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	54	429	1	ENST00000331340.3:c.95C>A	p.Pro32Gln	p.P32Q	ENST00000331340	NM_006060.4	32	cCg/cAg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737421	145737421	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0052908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	148	934	0	ENST00000428558.2:c.3266T>A	p.Leu1089Gln	p.L1089Q	ENST00000428558	NM_004260.3	1089	cTg/cAg																																																																															
ALK	238	MSKCC	GRCh37	2	29519803	29519803	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	CAGGC			P-0052908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	16	600	0	ENST00000389048.3:c.1768delinsGCCTG	p.Leu590AlafsTer17	p.L590Afs*17	ENST00000389048	NM_004304.4	590	Ttg/GCCTGtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0052912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	162	656	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175206	112175206	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	16	212	0	ENST00000257430.4:c.3915del	p.Glu1306LysfsTer2	p.E1306Kfs*2	ENST00000257430	NM_000038.5	1305	gcA/gc																																																																															
GNA11	2767	MSKCC	GRCh37	19	3113454	3113454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	67	659	0	ENST00000078429.4:c.448G>A	p.Glu150Lys	p.E150K	ENST00000078429	NM_002067.2	150	Gag/Aag																																																																															
RB1	5925	MSKCC	GRCh37	13	49027158	49027158	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0052912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	76	269	0	ENST00000267163.4:c.1725A>T	p.Gln575His	p.Q575H	ENST00000267163	NM_000321.2	575	caA/caT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0052913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	102	441	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	60	632	0	ENST00000269305.4:c.808T>G	p.Phe270Val	p.F270V	ENST00000269305	NM_001126112.2	270	Ttt/Gtt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932433	39932433	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	49	771	0	ENST00000378444.4:c.2166G>T	p.Leu722Phe	p.L722F	ENST00000378444	NM_001123385.1	722	ttG/ttT																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233349	69233349	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	10	276	0	ENST00000462284.1:c.1214C>G	p.Thr405Ser	p.T405S	ENST00000462284	NM_002392.5	405	aCt/aGt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856229	111856229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	13	175	0	ENST00000341259.2:c.280C>T	p.Arg94Cys	p.R94C	ENST00000341259	NM_005475.2	94	Cgt/Tgt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005546	150005546	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	10	362	0	ENST00000253339.5:c.679C>A	p.His227Asn	p.H227N	ENST00000253339		227	Cac/Aac																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074183	8074183	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	33	382	0	ENST00000377482.5:c.476C>A	p.Ser159Tyr	p.S159Y	ENST00000377482	NM_018948.3	159	tCt/tAt																																																																															
STK40	83931	MSKCC	GRCh37	1	36808967	36808967	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0052916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	67	636	0	ENST00000373129.3:c.1087G>T	p.Glu363Ter	p.E363*	ENST00000373129	NM_032017.1	363	Gag/Tag																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176054956	176054956	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	149	412	0	ENST00000367669.3:c.1097A>G	p.Asp366Gly	p.D366G	ENST00000367669	NM_022457.5	366	gAc/gGc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683184	88683184	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	49	285	0	ENST00000372037.3:c.1394C>A	p.Pro465Gln	p.P465Q	ENST00000372037	NM_004329.2	465	cCg/cAg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18524151	18524151	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0052916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	126	352	0	ENST00000266497.5:c.1663G>T	p.Glu555Ter	p.E555*	ENST00000266497		555	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0052916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	105	353	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905607	50905607	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	101	961	0	ENST00000440232.2:c.735G>T	p.Glu245Asp	p.E245D	ENST00000440232	NM_002691.3	245	gaG/gaT																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384997	31384997	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	41	548	1	ENST00000328111.2:c.1382G>T	p.Arg461Leu	p.R461L	ENST00000328111	NM_006892.3	461	cGc/cTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66242714	66242714	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0052916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	40	250	0	ENST00000273854.3:c.1856+2T>C		p.X619_splice	ENST00000273854	NM_004439.5	619																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56179495	56179496	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0052916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	29	244	0	ENST00000399503.3:c.3808_3809delinsTT	p.Ala1270Phe	p.A1270F	ENST00000399503	NM_005921.1	1270	GCt/TTt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435635	149435635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	54	639	1	ENST00000286301.3:c.2508C>A	p.Ser836Arg	p.S836R	ENST00000286301	NM_005211.3	836	agC/agA																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324500	31324501	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCAGGCTCT			P-0052916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	21	418	0	ENST00000412585.2:c.299_307dup	p.Leu102_Arg103insGlnSerLeu	p.L102_R103insQSL	ENST00000412585	NM_005514.6	103	cgg/cAGAGCCTGCgg																																																																															
NBN	4683	MSKCC	GRCh37	8	90993111	90993111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	47	222	0	ENST00000265433.3:c.331G>A	p.Glu111Lys	p.E111K	ENST00000265433	NM_002485.4	111	Gag/Aag																																																																															
RXRA	6256	MSKCC	GRCh37	9	137309141	137309141	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	43	781	1	ENST00000481739.1:c.748G>T	p.Val250Leu	p.V250L	ENST00000481739	NM_002957.4	250	Gtg/Ttg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139403467	139403467	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	91	1060	0	ENST00000277541.6:c.3026G>T	p.Cys1009Phe	p.C1009F	ENST00000277541	NM_017617.3	1009	tGt/tTt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			4487	679	643	0	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576883	7576883	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0052917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	798	701	0	ENST00000269305.4:c.963del	p.Lys321AsnfsTer24	p.K321Nfs*24	ENST00000269305	NM_001126112.2	321	aaA/aa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780684	9780684	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	614	679	2	ENST00000377346.4:c.1486C>T	p.Arg496Ter	p.R496*	ENST00000377346	NM_005026.3	496	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713343	40713343	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	423	656	0	ENST00000373198.4:c.4172G>T	p.Gly1391Val	p.G1391V	ENST00000373198	NM_133170.3	1391	gGa/gTa																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62324521	62324521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1918	247	978	0	ENST00000508582.2:c.2949C>A	p.His983Gln	p.H983Q	ENST00000508582		983	caC/caA																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707576	176707576	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	426	481	0	ENST00000439151.2:c.5633C>G	p.Pro1878Arg	p.P1878R	ENST00000439151	NM_022455.4	1878	cCt/cGt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0052920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	119	418	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061202	38061204	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0052928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	86	538	1	ENST00000250448.2:c.785_787del	p.Arg262del	p.R262del	ENST00000250448	NM_004496.3	262	cGCCag/cag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618543	37618543	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0052928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	122	589	0	ENST00000447079.4:c.219T>G	p.Tyr73Ter	p.Y73*	ENST00000447079	NM_015083.1	73	taT/taG																																																																															
DICER1	23405	MSKCC	GRCh37	14	95557639	95557639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	77	574	1	ENST00000343455.3:c.5428G>A	p.Asp1810Asn	p.D1810N	ENST00000343455	NM_177438.2	1810	Gat/Aat																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783807	50783807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	68	626	1	ENST00000398568.2:c.198G>T	p.Lys66Asn	p.K66N	ENST00000398568	NM_001042412.1	66	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578178	7578192	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TCAGGCGGCTCATAG	TCAGGCGGCTCATAG	-			P-0052967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	235	736	0	ENST00000269305.4:c.657_671del	p.Tyr220_Glu224del	p.Y220_E224del	ENST00000269305	NM_001126112.2	219	ccCTATGAGCCGCCTGAg/ccg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732997	30732997	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057524810		P-0052967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	59	552	0	ENST00000359013.4:c.1685G>A	p.Arg562His	p.R562H	ENST00000359013	NM_001024847.2	562	cGc/cAc																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260151	149260151	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	65	578	2	ENST00000360632.3:c.742C>T	p.Arg248Ter	p.R248*	ENST00000360632	NM_015472.4	248	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112170648	112170648	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0052967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	47	382	0	ENST00000257430.4:c.1744G>T	p.Glu582Ter	p.E582*	ENST00000257430	NM_000038.5	582	Gaa/Taa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205046	38205046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	66	655	0	ENST00000317025.8:c.644A>G	p.Lys215Arg	p.K215R	ENST00000317025	NM_023034.1	215	aAa/aGa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562487	21562487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	44	179	0	ENST00000382592.4:c.1432G>A	p.Ala478Thr	p.A478T	ENST00000382592	NM_014572.2	478	Gcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0046603-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			393	120	395	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0046603-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			383	97	304	3	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0046603-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			827	141	685	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
B2M	567	MSKCC	GRCh37	15	45007689	45007690	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0046603-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			626	67	415	0	ENST00000558401.1:c.137_138del	p.Tyr46CysfsTer10	p.Y46Cfs*10	ENST00000558401	NM_004048.2	46	TAt/t																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604625	48604625	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0046603-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			322	27	198	0	ENST00000342988.3:c.1448-1G>A		p.X483_splice	ENST00000342988	NM_005359.5	483																																																																																
ASXL2	55252	MSKCC	GRCh37	2	25994354	25994355	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0046603-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			537	184	421	0	ENST00000435504.4:c.458_459delAA	p.Lys153SerfsTer51	p.K153Sfs*51	ENST00000435504		153	aAA/a																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217855	7217858	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	-			P-0046603-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			643	200	633	0	ENST00000380728.2:c.153_156del	p.Lys53ArgfsTer9	p.K53Rfs*9	ENST00000380728		51	agGAAG/ag																																																																															
NF2	4771	MSKCC	GRCh37	22	30051644	30051651	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAGCAC	CAGAGCAC	-			P-0046603-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			455	70	365	0	ENST00000338641.4:c.579_586del	p.Glu194ArgfsTer6	p.E194Rfs*6	ENST00000338641	NM_000268.3	193	gCAGAGCAC/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0052142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			536	221	385	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635202	87635202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	295	447	1	ENST00000277120.3:c.2254G>A	p.Val752Ile	p.V752I	ENST00000277120		752	Gtc/Atc																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045802	26045802	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052296-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	252	647	0	ENST00000540144.1:c.164A>G	p.Tyr55Cys	p.Y55C	ENST00000540144	NM_003531.2	55	tAc/tGc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939788	71939788	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052296-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			380	226	557	2	ENST00000298229.2:c.419del	p.Pro140ArgfsTer39	p.P140Rfs*39	ENST00000298229	NM_001567.3	139	Ccc/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822378	72822378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052296-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			454	301	747	0	ENST00000268489.5:c.9797C>T	p.Thr3266Met	p.T3266M	ENST00000268489	NM_006885.3	3266	aCg/aTg																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439843	51439843	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052296-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			250	228	368	0	ENST00000262662.1:c.412delG	p.Asp138ThrfsTer18	p.D138Tfs*18	ENST00000262662		136	aaG/aa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061248	38061249	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC			P-0052296-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			390	246	499	0	ENST00000250448.2:c.738_740dup	p.Leu246_His247insGln	p.L246_H247insQ	ENST00000250448	NM_004496.3	247	cac/caGCAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916128	9916128	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052296-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	23	425	0	ENST00000330684.3:c.2161A>G	p.Lys721Glu	p.K721E	ENST00000330684	NM_001134407.1	721	Aaa/Gaa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266710	198266710	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0052296-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	161	494	0	ENST00000335508.6:c.2222A>C	p.Lys741Thr	p.K741T	ENST00000335508	NM_012433.2	741	aAg/aCg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274898	41274898	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052296-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			72	440	474	0	ENST00000349496.5:c.1148G>C	p.Trp383Ser	p.W383S	ENST00000349496	NM_001904.3	383	tGg/tCg																																																																															
TEK	7010	MSKCC	GRCh37	9	27202845	27202845	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052296-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			350	114	397	0	ENST00000380036.4:c.1937A>C	p.Lys646Thr	p.K646T	ENST00000380036	NM_000459.3	646	aAg/aCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0052538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	134	537	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	86	330	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061310	38061310	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	375	664	1	ENST00000250448.2:c.679T>C	p.Cys227Arg	p.C227R	ENST00000250448	NM_004496.3	227	Tgc/Cgc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910647	29910647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	182	941	0	ENST00000376809.5:c.187G>A	p.Asp63Asn	p.D63N	ENST00000376809	NM_002116.7	63	Gac/Aac																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306927	65306927	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0052538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	190	466	0	ENST00000342505.4:c.2649+1del		p.X883_splice	ENST00000342505	NM_002227.2	883																																																																																
MST1R	4486	MSKCC	GRCh37	3	49933148	49933148	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0052538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	90	530	0	ENST00000296474.3:c.2962G>C	p.Val988Leu	p.V988L	ENST00000296474	NM_002447.2	988	Gtt/Ctt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0052608-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			685	175	821	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044556	47044556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052608-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			936	179	882	1	ENST00000329236.7:c.1819C>T	p.Arg607Trp	p.R607W	ENST00000329236	NM_001204466.1	607	Cgg/Tgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29550438	29550464	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACAATGAACTTTATGTTACTGCAGCTC	ACAATGAACTTTATGTTACTGCAGCTC	-			P-0052608-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			127	43	143	0	ENST00000358273.4:c.1722-20_1728del		p.X574_splice	ENST00000358273	NM_001042492.2	574																																																																																
FGF19	9965	MSKCC	GRCh37	11	69514314	69514314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052608-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1184	109	614	0	ENST00000294312.3:c.367G>A	p.Glu123Lys	p.E123K	ENST00000294312	NM_005117.2	123	Gag/Aag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89842149	89842149	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0052608-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			726	164	610	0	ENST00000389301.3:c.1900+1del		p.X634_splice	ENST00000389301	NM_000135.2	634																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52582146	52582146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052608-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			535	103	435	1	ENST00000394830.3:c.4682G>A	p.Arg1561His	p.R1561H	ENST00000394830	NM_018313.4	1561	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0052687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	71	767	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0052687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	29	784	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
CCND2	894	MSKCC	GRCh37	12	4409060	4409060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	48	657	0	ENST00000261254.3:c.755C>T	p.Ala252Val	p.A252V	ENST00000261254	NM_001759.3	252	gCg/gTg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928833	49928833	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0052687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	88	1127	0	ENST00000296474.3:c.3533G>C	p.Arg1178Pro	p.R1178P	ENST00000296474	NM_002447.2	1178	cGg/cCg																																																																															
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	319	491	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28611336	28611336	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201905189		P-0052688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	45	667	0	ENST00000241453.7:c.1295C>T	p.Thr432Met	p.T432M	ENST00000241453	NM_004119.2	432	aCg/aTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68982089	68982089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	69	690	0	ENST00000288368.4:c.1463G>A	p.Arg488His	p.R488H	ENST00000288368	NM_024870.2	488	cGt/cAt																																																																															
EZH1	2145	MSKCC	GRCh37	17	40858038	40858038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	119	956	1	ENST00000428826.2:c.1826G>A	p.Arg609His	p.R609H	ENST00000428826		609	cGt/cAt																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085821	16085821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	61	791	0	ENST00000281043.3:c.997G>A	p.Ala333Thr	p.A333T	ENST00000281043	NM_005378.4	333	Gcc/Acc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9776098	9776098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	102	1090	2	ENST00000377346.4:c.562C>T	p.Arg188Trp	p.R188W	ENST00000377346	NM_005026.3	188	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578258	7578261	+	frameshift_variant	Frame_Shift_Del	DEL	CACT	CACT	-			P-0052688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	207	968	0	ENST00000269305.4:c.588_591del	p.Val197LysfsTer49	p.V197Kfs*49	ENST00000269305	NM_001126112.2	196	cgAGTG/cg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207033	1207033	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	157	985	0	ENST00000326873.7:c.122del	p.Lys41SerfsTer10	p.K41Sfs*10	ENST00000326873	NM_000455.4	41	Aag/ag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260029	16260029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	120	821	0	ENST00000375759.3:c.7294C>T	p.Pro2432Ser	p.P2432S	ENST00000375759	NM_015001.2	2432	Ccc/Tcc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52662944	52662944	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	94	602	0	ENST00000394830.3:c.1409A>G	p.Tyr470Cys	p.Y470C	ENST00000394830	NM_018313.4	470	tAc/tGc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805920	32805920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	316	1113	1	ENST00000374899.4:c.91C>T	p.Leu31Phe	p.L31F	ENST00000374899	NM_018833.2	31	Ctt/Ttt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045168	47045175	+	frameshift_variant	Frame_Shift_Del	DEL	ACTAGAGA	ACTAGAGA	C			P-0052689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	119	411	0	ENST00000329236.7:c.2175_2182delinsC	p.Leu726ArgfsTer7	p.L726Rfs*7	ENST00000329236	NM_001204466.1	725	gcACTAGAGAag/gcCag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0052694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	64	441	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0052694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	131	548	2	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0052694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	72	542	4	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	79	724	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0052694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	115	836	4	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																															
RET	5979	MSKCC	GRCh37	10	43615083	43615083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	45	989	4	ENST00000355710.3:c.2497C>T	p.Arg833Cys	p.R833C	ENST00000355710	NM_020975.4	833	Cgc/Tgc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176104189	176104189	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	30	447	1	ENST00000367669.3:c.925G>C	p.Asp309His	p.D309H	ENST00000367669	NM_022457.5	309	Gat/Cat																																																																															
CARD11	84433	MSKCC	GRCh37	7	2949692	2949692	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	21	711	0	ENST00000396946.4:c.3252G>C	p.Lys1084Asn	p.K1084N	ENST00000396946	NM_032415.4	1084	aaG/aaC																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87636307	87636307	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	24	714	0	ENST00000277120.3:c.2472G>C	p.Gln824His	p.Q824H	ENST00000277120		824	caG/caC																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0052707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	249	649	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																															
TERT	7015	MSKCC	GRCh37	5	1279558	1279558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	279	897	1	ENST00000310581.5:c.1978G>A	p.Ala660Thr	p.A660T	ENST00000310581	NM_198253.2	660	Gca/Aca																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81891951	81891951	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	66	518	0	ENST00000359376.3:c.421A>G	p.Ile141Val	p.I141V	ENST00000359376	NM_002661.3	141	Att/Gtt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0052710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	264	680	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	416	716	0	ENST00000269305.4:c.577C>A	p.His193Asn	p.H193N	ENST00000269305	NM_001126112.2	193	Cat/Aat																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519896		P-0052710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	176	401	0	ENST00000281708.4:c.1514G>T	p.Arg505Leu	p.R505L	ENST00000281708	NM_033632.3	505	cGc/cTc																																																																															
ATM	472	MSKCC	GRCh37	11	108205768	108205768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	113	400	0	ENST00000278616.4:c.8083G>A	p.Gly2695Ser	p.G2695S	ENST00000278616	NM_000051.3	2695	Ggt/Agt																																																																															
ATM	472	MSKCC	GRCh37	11	108165729	108165729	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	74	394	0	ENST00000278616.4:c.4852C>T	p.Arg1618Ter	p.R1618*	ENST00000278616	NM_000051.3	1618	Cga/Tga																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508373	106508373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	167	512	0	ENST00000359195.3:c.367C>T	p.Arg123Cys	p.R123C	ENST00000359195	NM_002649.2	123	Cgc/Tgc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86633862	86633862	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	124	383	3	ENST00000274376.6:c.971G>A	p.Arg324Lys	p.R324K	ENST00000274376	NM_002890.2	324	aGa/aAa																																																																															
APC	324	MSKCC	GRCh37	5	112175626	112175722	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAG	AGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAG	-			P-0052710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	225	374	0	ENST00000257430.4:c.4337_4433del	p.Ala1446GlyfsTer29	p.A1446Gfs*29	ENST00000257430	NM_000038.5	1445	acAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAG/ac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0052715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	38	638	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
PGR	5241	MSKCC	GRCh37	11	100998525	100998525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	103	736	0	ENST00000325455.5:c.1277C>T	p.Pro426Leu	p.P426L	ENST00000325455	NM_001202474.3	426	cCg/cTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974773	21974774	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	13	349	0	ENST00000304494.5:c.53_54insT	p.Ala19GlyfsTer25	p.A19Gfs*25	ENST00000304494	NM_000077.4	18	acg/acTg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482343	56482343	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0052735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	10	155	0	ENST00000267101.3:c.891T>G	p.Asp297Glu	p.D297E	ENST00000267101	NM_001982.3	297	gaT/gaG																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0052737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	81	467	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31451710	31451710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	25	329	0	ENST00000344624.3:c.2612G>A	p.Arg871His	p.R871H	ENST00000344624		871	cGc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42035075	42035075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	29	587	0	ENST00000219905.7:c.4918del	p.Val1640SerfsTer10	p.V1640Sfs*10	ENST00000219905	NM_001164273.1	1639	gaG/ga																																																																															
APC	324	MSKCC	GRCh37	5	112157641	112157648	+	frameshift_variant	Frame_Shift_Del	DEL	TGAAACTT	TGAAACTT	-			P-0052737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	47	492	0	ENST00000257430.4:c.1362_1369del	p.Met454IlefsTer3	p.M454Ifs*3	ENST00000257430	NM_000038.5	454	aTGAAACTT/a																																																																															
APC	324	MSKCC	GRCh37	5	112175692	112175695	+	frameshift_variant	Frame_Shift_Del	DEL	TAAG	TAAG	-			P-0052737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	34	354	0	ENST00000257430.4:c.4401_4404del	p.Gln1469LeufsTer3	p.Q1469Lfs*3	ENST00000257430	NM_000038.5	1467	ccTAAG/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0052526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	194	658	1	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612632	228612632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	145	946	2	ENST00000366696.1:c.395G>A	p.Arg132His	p.R132H	ENST00000366696	NM_003493.2	132	cGc/cAc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40459688	40459688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	123	950	0	ENST00000345506.4:c.1853G>A	p.Arg618His	p.R618H	ENST00000345506	NM_003152.3	618	cGc/cAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602505	10602505	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			622	348	1324	0	ENST00000171111.5:c.1073T>G	p.Leu358Arg	p.L358R	ENST00000171111	NM_203500.1	358	cTg/cGg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098404	11098404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	214	715	0	ENST00000344626.4:c.922A>G	p.Thr308Ala	p.T308A	ENST00000344626	NM_003072.3	308	Acg/Gcg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967033	25967033	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0052526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			697	316	966	0	ENST00000435504.4:c.2173A>T	p.Lys725Ter	p.K725*	ENST00000435504		725	Aag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40757407	40757407	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			733	261	827	0	ENST00000373198.4:c.2891C>A	p.Ala964Asp	p.A964D	ENST00000373198	NM_133170.3	964	gCc/gAc																																																																															
MET	4233	MSKCC	GRCh37	7	116411660	116411660	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0052526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			719	235	923	0	ENST00000397752.3:c.2839T>G	p.Leu947Val	p.L947V	ENST00000397752	NM_000245.2	947	Tta/Gta																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891265	101891265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			348	190	699	1	ENST00000374994.4:c.226G>A	p.Asp76Asn	p.D76N	ENST00000374994	NM_004612.2	76	Gac/Aac																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891349	101891349	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	170	657	2	ENST00000374994.4:c.310G>C	p.Asp104His	p.D104H	ENST00000374994	NM_004612.2	104	Gac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0052676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	478	515	2	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31483728	31483728	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	148	149	0	ENST00000344624.3:c.2004G>T	p.Leu668Phe	p.L668F	ENST00000344624		668	ttG/ttT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974790	21974790	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	94	129	0	ENST00000304494.5:c.37del	p.Ala13LeufsTer13	p.A13Lfs*13	ENST00000304494	NM_000077.4	13	Gct/ct																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0052699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	253	513	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922324	178922324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793732		P-0052699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	202	519	0	ENST00000263967.3:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000263967	NM_006218.2	365	Gaa/Aaa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953887	17953887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	213	1050	1	ENST00000458235.1:c.515G>A	p.Arg172Gln	p.R172Q	ENST00000458235	NM_000215.3	172	cGg/cAg																																																																															
KDR	3791	MSKCC	GRCh37	4	55991436	55991436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	412	925	1	ENST00000263923.4:c.25G>A	p.Val9Ile	p.V9I	ENST00000263923	NM_002253.2	9	Gtc/Atc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259202	89259202	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0052699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	192	496	0	ENST00000336596.2:c.346T>G	p.Cys116Gly	p.C116G	ENST00000336596	NM_005233.5	116	Tgc/Ggc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477134	67477134	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	187	877	0	ENST00000327367.4:c.941T>A	p.Phe314Tyr	p.F314Y	ENST00000327367	NM_005902.3	314	tTt/tAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578285	7578288	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0052699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	360	766	0	ENST00000269305.4:c.561_564del	p.Leu188ProfsTer58	p.L188Pfs*58	ENST00000269305	NM_001126112.2	187	ggTCTG/gg																																																																															
RARA	5914	MSKCC	GRCh37	17	38512339	38512339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	44	733	0	ENST00000254066.5:c.1250C>T	p.Ser417Leu	p.S417L	ENST00000254066	NM_000964.3	417	tCa/tTa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440667	56440667	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0052699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	370	878	1	ENST00000407977.2:c.551T>A	p.Val184Glu	p.V184E	ENST00000407977		184	gTg/gAg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298084	15298084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	421	1061	1	ENST00000263388.2:c.1672C>T	p.Arg558Cys	p.R558C	ENST00000263388	NM_000435.2	558	Cgc/Tgc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176678803	176678803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	253	564	0	ENST00000439151.2:c.4714G>A	p.Gly1572Arg	p.G1572R	ENST00000439151	NM_022455.4	1572	Gga/Aga																																																																															
RHEB	6009	MSKCC	GRCh37	7	151168649	151168649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	219	546	0	ENST00000262187.5:c.318G>A	p.Met106Ile	p.M106I	ENST00000262187	NM_005614.3	106	atG/atA																																																																															
PREX2	80243	MSKCC	GRCh37	8	69103998	69103998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	229	638	0	ENST00000288368.4:c.4388C>T	p.Thr1463Ile	p.T1463I	ENST00000288368	NM_024870.2	1463	aCa/aTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0052701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	19	531	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0052701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	353	839	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098950	178098950	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	83	399	0	ENST00000397062.3:c.95T>G	p.Val32Gly	p.V32G	ENST00000397062	NM_006164.4	32	gTa/gGa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105586	27105586	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0052701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	141	661	0	ENST00000324856.7:c.5197G>T	p.Glu1733Ter	p.E1733*	ENST00000324856	NM_006015.4	1733	Gag/Tag																																																																															
FLT1	2321	MSKCC	GRCh37	13	29005442	29005443	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0052701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	23	368	0	ENST00000282397.4:c.818dup	p.Asn273LysfsTer2	p.N273Kfs*2	ENST00000282397	NM_002019.4	273	aat/aaAt																																																																															
IGF1	3479	MSKCC	GRCh37	12	102869545	102869545	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	63	730	0	ENST00000307046.8:c.96del	p.Phe33SerfsTer70	p.F33Sfs*70	ENST00000307046	NM_001111285.1	32	ctC/ct																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246200	41246200	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	196	700	0	ENST00000357654.3:c.1348A>G	p.Lys450Glu	p.K450E	ENST00000357654	NM_007294.3	450	Aaa/Gaa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31374324	31374324	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	151	888	0	ENST00000328111.2:c.323A>C	p.Asn108Thr	p.N108T	ENST00000328111	NM_006892.3	108	aAc/aCc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217168	66217168	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	220	681	0	ENST00000273854.3:c.2447del	p.Val816GlyfsTer35	p.V816Gfs*35	ENST00000273854	NM_004439.5	816	gTg/gg																																																																															
TERT	7015	MSKCC	GRCh37	5	1279472	1279472	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1537	203	1237	0	ENST00000310581.5:c.2064G>T	p.Arg688Ser	p.R688S	ENST00000310581	NM_198253.2	688	agG/agT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180051019	180051019	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	165	1007	0	ENST00000261937.6:c.1464C>A	p.Asp488Glu	p.D488E	ENST00000261937	NM_182925.4	488	gaC/gaA																																																																															
AGO2	27161	MSKCC	GRCh37	8	141557653	141557653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	199	1089	0	ENST00000220592.5:c.1662G>T	p.Arg554Ser	p.R554S	ENST00000220592	NM_012154.3	554	agG/agT																																																																															
ABL1	25	MSKCC	GRCh37	9	133755982	133755982	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0052701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	74	883	0	ENST00000318560.5:c.1609A>T	p.Arg537Ter	p.R537*	ENST00000318560	NM_005157.4	537	Aga/Tga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041651	47041651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	90	893	0	ENST00000329236.7:c.1642C>T	p.His548Tyr	p.H548Y	ENST00000329236	NM_001204466.1	548	Cat/Tat																																																																															
ATRX	546	MSKCC	GRCh37	X	76938740	76938740	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	65	809	1	ENST00000373344.5:c.2008A>T	p.Thr670Ser	p.T670S	ENST00000373344	NM_000489.3	670	Act/Tct																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152864462	152864462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	36	102	0	ENST00000406277.2:c.64G>T	p.Ala22Ser	p.A22S	ENST00000406277	NM_152274.4	22	Gcc/Tcc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258040	16258040	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	97	587	0	ENST00000375759.3:c.5305G>T	p.Ala1769Ser	p.A1769S	ENST00000375759	NM_015001.2	1769	Gcc/Tcc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266197	198266197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	67	558	0	ENST00000335508.6:c.2423C>T	p.Thr808Ile	p.T808I	ENST00000335508	NM_012433.2	808	aCa/aTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0052722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	150	564	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220370	1220370	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0052722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	107	818	0	ENST00000326873.7:c.465-2A>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
CASP8	841	MSKCC	GRCh37	2	202150030	202150030	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	110	730	1	ENST00000358485.4:c.1471C>T	p.Arg491Ter	p.R491*	ENST00000358485	NM_001080125.1	491	Cga/Tga																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041519	14041519	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1161291089		P-0052722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	77	555	0	ENST00000311895.7:c.2066G>A	p.Arg689His	p.R689H	ENST00000311895	NM_005236.2	689	cGt/cAt																																																																															
TOP1	7150	MSKCC	GRCh37	20	39746916	39746916	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	82	484	0	ENST00000361337.2:c.1930A>G	p.Met644Val	p.M644V	ENST00000361337	NM_003286.2	644	Atg/Gtg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69143600	69143600	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	69	437	0	ENST00000288368.4:c.4808C>A	p.Ala1603Asp	p.A1603D	ENST00000288368	NM_024870.2	1603	gCt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0052725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	86	515	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4090603	4090603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	43	702	1	ENST00000262948.5:c.1196C>T	p.Ala399Val	p.A399V	ENST00000262948	NM_030662.3	399	gCc/gTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629513	187629513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	121	831	0	ENST00000441802.2:c.1469C>T	p.Pro490Leu	p.P490L	ENST00000441802	NM_005245.3	490	cCt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0010293-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			402	256	624	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72076794	72076794	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145840571		P-0010293-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			498	166	494	0	ENST00000357731.5:c.703G>A	p.Val235Met	p.V235M	ENST00000357731	NM_173808.2	235	Gtg/Atg																																																																															
RB1	5925	MSKCC	GRCh37	13	49037876	49037876	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010293-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			184	140	241	0	ENST00000267163.4:c.2116T>C	p.Cys706Arg	p.C706R	ENST00000267163	NM_000321.2	706	Tgt/Cgt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435434	18435434	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010293-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			322	93	273	0	ENST00000266497.5:c.419G>T	p.Arg140Ile	p.R140I	ENST00000266497		140	aGa/aTa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100139	30100139	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010293-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			661	269	590	1	ENST00000331968.5:c.1481T>A	p.Ile494Asn	p.I494N	ENST00000331968	NM_002742.2	494	aTc/aAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0052236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	295	468	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0052236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	156	434	2	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0052236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	293	842	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0052236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	129	523	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0052236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	89	439	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	142	323	2	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0052236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	161	336	1	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
RAD50	10111	MSKCC	GRCh37	5	131977952	131977952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	153	488	1	ENST00000265335.6:c.3835C>T	p.Arg1279Cys	p.R1279C	ENST00000265335		1279	Cgt/Tgt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32184785	32184785	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11963697		P-0052236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	275	828	3	ENST00000375023.3:c.1798G>A	p.Val600Ile	p.V600I	ENST00000375023	NM_004557.3	600	Gtt/Att																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620539	52620539	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143085435		P-0052236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	217	662	3	ENST00000394830.3:c.3214G>A	p.Val1072Met	p.V1072M	ENST00000394830	NM_018313.4	1072	Gtg/Atg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966538	25966538	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	262	773	2	ENST00000435504.4:c.2668T>G	p.Leu890Val	p.L890V	ENST00000435504		890	Tta/Gta																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151932969	151932969	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	11	14	0	ENST00000262189.6:c.2702T>C	p.Leu901Pro	p.L901P	ENST00000262189	NM_170606.2	901	cTg/cCg																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0052525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	55	240	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	156	589	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																															
RRAS	6237	MSKCC	GRCh37	19	50139977	50139977	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149565606		P-0052525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	72	686	0	ENST00000246792.3:c.352G>A	p.Glu118Lys	p.E118K	ENST00000246792	NM_006270.3	118	Gag/Aag																																																																															
NF1	4763	MSKCC	GRCh37	17	29554305	29554305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	97	540	0	ENST00000358273.4:c.2321C>T	p.Thr774Ile	p.T774I	ENST00000358273	NM_001042492.2	774	aCt/aTt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120249	70120250	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0052525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	136	545	1	ENST00000245479.2:c.1252_1253dup	p.Ala419SerfsTer52	p.A419Sfs*52	ENST00000245479	NM_000346.3	417	-/AT																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086110	16086110	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	25	555	0	ENST00000281043.3:c.1286A>G	p.Tyr429Cys	p.Y429C	ENST00000281043	NM_005378.4	429	tAt/tGt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206827	36206827	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0052525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	113	470	0	ENST00000300305.3:c.685G>T	p.Glu229Ter	p.E229*	ENST00000300305		229	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112128219	112128219	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	60	290	0	ENST00000257430.4:c.723del	p.Ala242GlnfsTer51	p.A242Qfs*51	ENST00000257430	NM_000038.5	241	gAa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0052537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	30	413	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370226	40370226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	101	835	1	ENST00000293328.3:c.1112C>T	p.Ala371Val	p.A371V	ENST00000293328	NM_012448.3	371	gCc/gTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207118	1207123	+	inframe_deletion	In_Frame_Del	DEL	CGGAGA	CGGAGA	-			P-0052537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	87	675	1	ENST00000326873.7:c.208_213del	p.Glu70_Thr71del	p.E70_T71del	ENST00000326873	NM_000455.4	69	tCGGAGAcg/tcg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610481	10610481	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	89	715	1	ENST00000171111.5:c.229T>C	p.Cys77Arg	p.C77R	ENST00000171111	NM_203500.1	77	Tgt/Cgt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198263263	198263263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	66	406	0	ENST00000335508.6:c.3056G>A	p.Arg1019Lys	p.R1019K	ENST00000335508	NM_012433.2	1019	aGa/aAa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521543	8521543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	62	397	0	ENST00000356435.5:c.695G>T	p.Arg232Leu	p.R232L	ENST00000356435		232	cGc/cTc																																																																															
MITF	4286	MSKCC	GRCh37	3	70014284	70014284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	144	493	0	ENST00000352241.4:c.1448C>G	p.Thr483Ser	p.T483S	ENST00000352241	NM_198159.2	483	aCc/aGc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589575	67589576	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	17	257	0	ENST00000274335.5:c.1344dupA	p.Leu449IlefsTer3	p.L449Ifs*3	ENST00000274335		446	-/A																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0052542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	189	622	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123185061	123185061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	45	271	0	ENST00000218089.9:c.1108C>T	p.Arg370Trp	p.R370W	ENST00000218089	NM_001042749.1	370	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0052574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	194	518	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45394805	45394805	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	124	414	1	ENST00000262160.6:c.544C>T	p.Arg182Ter	p.R182*	ENST00000262160	NM_005901.5	182	Cga/Tga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134234	11134234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	105	890	0	ENST00000344626.4:c.2900G>A	p.Arg967His	p.R967H	ENST00000344626	NM_003072.3	967	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	264	927	0	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969813	81969813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	154	734	0	ENST00000359376.3:c.2882C>T	p.Thr961Met	p.T961M	ENST00000359376	NM_002661.3	961	aCg/aTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249442	153249442	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0052574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	216	653	0	ENST00000281708.4:c.1336T>A	p.Trp446Arg	p.W446R	ENST00000281708	NM_033632.3	446	Tgg/Agg																																																																															
APC	324	MSKCC	GRCh37	5	112175599	112175599	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0052574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	121	433	0	ENST00000257430.4:c.4308del	p.Ser1436ArgfsTer37	p.S1436Rfs*37	ENST00000257430	NM_000038.5	1436	agT/ag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	64	414	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0052576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	75	408	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058707	180058707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	122	916	0	ENST00000261937.6:c.130G>A	p.Gly44Ser	p.G44S	ENST00000261937	NM_182925.4	44	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	49	324	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0052576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	144	664	0	ENST00000269305.4:c.993+2T>C		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
ATRX	546	MSKCC	GRCh37	X	76776346	76776347	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGCTAACGCCTGTACT			P-0052576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	17	285	0	ENST00000373344.5:c.7104_7119dup	p.Leu2374SerfsTer8	p.L2374Sfs*8	ENST00000373344	NM_000489.3	2373	-/AGTACAGGCGTTAGCA																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141524	11141524	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	96	695	0	ENST00000344626.4:c.3502del	p.Ala1168GlnfsTer4	p.A1168Qfs*4	ENST00000344626	NM_003072.3	1167	tcG/tc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	58	495	0	ENST00000342988.3:c.1067C>A	p.Pro356His	p.P356H	ENST00000342988	NM_005359.5	356	cCt/cAt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0052579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	42	565	1	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0052579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	125	785	1	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378648	25378648	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	149	382	0	ENST00000256078.4:c.350A>G	p.Lys117Arg	p.K117R	ENST00000256078	NM_033360.2	117	aAa/aGa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0052604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	69	302	0	ENST00000288602.6:c.1742A>T	p.Asn581Ile	p.N581I	ENST00000288602	NM_004333.4	581	aAt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs878854073		P-0052604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	201	542	0	ENST00000269305.4:c.673-1G>A		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
STK11	6794	MSKCC	GRCh37	19	1219357	1219357	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	206	677	2	ENST00000326873.7:c.409C>T	p.Gln137Ter	p.Q137*	ENST00000326873	NM_000455.4	137	Cag/Tag																																																																															
CDC73	79577	MSKCC	GRCh37	1	193172945	193172945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	149	390	0	ENST00000367435.3:c.993G>C	p.Lys331Asn	p.K331N	ENST00000367435	NM_024529.4	331	aaG/aaC																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231103	46231103	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0052604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	25	218	0	ENST00000334344.6:c.1024-1G>C		p.X342_splice	ENST00000334344	NM_152641.2	342																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49425347	49425347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	62	814	0	ENST00000301067.7:c.13141G>A	p.Asp4381Asn	p.D4381N	ENST00000301067	NM_003482.3	4381	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587780070		P-0052605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	453	854	0	ENST00000269305.4:c.535C>A	p.His179Asn	p.H179N	ENST00000269305	NM_001126112.2	179	Cat/Aat																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523313	9523313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	148	596	0	ENST00000353224.5:c.1924C>T	p.Pro642Ser	p.P642S	ENST00000353224	NM_177990.2	642	Ccc/Tcc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261680	16261680	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0052605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	107	632	0	ENST00000375759.3:c.8945T>G	p.Leu2982Arg	p.L2982R	ENST00000375759	NM_015001.2	2982	cTc/cGc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115251196	115251196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	183	627	1	ENST00000369535.4:c.530G>A	p.Gly177Glu	p.G177E	ENST00000369535	NM_002524.4	177	gGg/gAg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137004	64137004	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	107	603	0	ENST00000334205.4:c.1515A>C	p.Glu505Asp	p.E505D	ENST00000334205	NM_003942.2	505	gaA/gaC																																																																															
RB1	5925	MSKCC	GRCh37	13	49039155	49039155	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0052605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	203	395	0	ENST00000267163.4:c.2233A>T	p.Lys745Ter	p.K745*	ENST00000267163	NM_000321.2	745	Aaa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604719	48604719	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	282	501	0	ENST00000342988.3:c.1541C>G	p.Pro514Arg	p.P514R	ENST00000342988	NM_005359.5	514	cCa/cGa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546767	9546767	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	88	463	0	ENST00000353224.5:c.1255T>C	p.Ser419Pro	p.S419P	ENST00000353224	NM_177990.2	419	Tcc/Ccc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670673	134670673	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	164	746	0	ENST00000398015.3:c.584A>C	p.Lys195Thr	p.K195T	ENST00000398015	NM_004441.4	195	aAg/aCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0052606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	114	629	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0052606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	151	542	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0052606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	237	948	1	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	166	747	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323186	31323186	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	281	1068	1	ENST00000412585.2:c.803G>A	p.Trp268Ter	p.W268*	ENST00000412585	NM_005514.6	268	tGg/tAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266078	41266358	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATA	GCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATA	-			P-0052606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	145	457	0	ENST00000349496.5:c.78_242-84del		p.X26_splice	ENST00000349496	NM_001904.3	26																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153247178	153247179	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGTA			P-0052606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	113	405	0	ENST00000281708.4:c.1620_1623dup	p.Asn542TyrfsTer2	p.N542Yfs*2	ENST00000281708	NM_033632.3	541	-/TACT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0052622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	176	448	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	158	623	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0052622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	294	847	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781467	135781467	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	131	584	0	ENST00000298552.3:c.1498C>T	p.Arg500Ter	p.R500*	ENST00000298552	NM_001162426.1	500	Cga/Tga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163816	32163816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	173	627	0	ENST00000375023.3:c.5410G>A	p.Ala1804Thr	p.A1804T	ENST00000375023	NM_004557.3	1804	Gcg/Acg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117641098	117641098	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	111	673	0	ENST00000368508.3:c.5873A>G	p.Glu1958Gly	p.E1958G	ENST00000368508	NM_002944.2	1958	gAa/gGa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922025	39922025	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0052622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	146	784	0	ENST00000378444.4:c.4147T>A	p.Tyr1383Asn	p.Y1383N	ENST00000378444	NM_001123385.1	1383	Tac/Aac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922043	39922043	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0052622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	168	853	1	ENST00000378444.4:c.4129T>A	p.Leu1377Met	p.L1377M	ENST00000378444	NM_001123385.1	1377	Ttg/Atg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	244	499	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429978	78429978	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	80	330	1	ENST00000370768.2:c.901del	p.Ile301TyrfsTer22	p.I301Yfs*22	ENST00000370768	NM_003902.3	301	Ata/ta																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	94	398	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	295	651	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	78	400	0	ENST00000380152.3:c.5351delA	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	136	546	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	125	408	2	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7578397	7578398	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	178	737	0	ENST00000269305.4:c.532dupC	p.His178ProfsTer3	p.H178Pfs*3	ENST00000269305	NM_001126112.2	178	cac/cCac																																																																															
TET1	80312	MSKCC	GRCh37	10	70332273	70332273	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	95	361	0	ENST00000373644.4:c.184del	p.Thr62GlnfsTer13	p.T62Qfs*13	ENST00000373644	NM_030625.2	60	Aaa/aa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	206	852	2	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101829	11101829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	162	673	0	ENST00000344626.4:c.1249C>T	p.Arg417Cys	p.R417C	ENST00000344626	NM_003072.3	417	Cgc/Tgc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001374	150001376	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs753305883		P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	131	519	0	ENST00000253339.5:c.2228_2230del	p.Leu743del	p.L743del	ENST00000253339		743	cTTCga/cga																																																																															
MGA	23269	MSKCC	GRCh37	15	42059170	42059170	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	143	407	2	ENST00000219905.7:c.8895delC	p.Thr2966ProfsTer4	p.T2966Pfs*4	ENST00000219905	NM_001164273.1	2964	Ccc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	192	739	1	ENST00000269305.4:c.376T>C	p.Tyr126His	p.Y126H	ENST00000269305	NM_001126112.2	126	Tac/Cac																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	173	720	0	ENST00000337652.1:c.1561dupC	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413710	138413710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	132	439	5	ENST00000289153.2:c.1810delC	p.Arg604GlyfsTer4	p.R604Gfs*4	ENST00000289153	NM_006219.2	604	Cgg/gg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	146	561	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	108	533	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	209	808	3	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424178	49424178	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	108	417	2	ENST00000301067.7:c.13884delC	p.Thr4629ProfsTer11	p.T4629Pfs*11	ENST00000301067	NM_003482.3	4628	ccC/cc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151917611	151917611	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	110	493	0	ENST00000262189.6:c.3709C>T	p.Arg1237Ter	p.R1237*	ENST00000262189	NM_170606.2	1237	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434959	49434959	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	142	686	1	ENST00000301067.7:c.6594del	p.Tyr2199IlefsTer65	p.Y2199Ifs*65	ENST00000301067	NM_003482.3	2198	ccC/cc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942031	81942031	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	130	500	0	ENST00000359376.3:c.1568C>A	p.Pro523His	p.P523H	ENST00000359376	NM_002661.3	523	cCt/cAt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273104	18273105	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	172	770	0	ENST00000222254.8:c.1000dup	p.Asp334GlyfsTer26	p.D334Gfs*26	ENST00000222254	NM_005027.3	332	tgg/tGgg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273026	18273026	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	178	808	0	ENST00000222254.8:c.921delC	p.Lys308ArgfsTer33	p.K308Rfs*33	ENST00000222254	NM_005027.3	306	Ccc/cc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216758	7216758	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	159	525	0	ENST00000380728.2:c.665T>C	p.Leu222Pro	p.L222P	ENST00000380728		222	cTa/cCa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881428	37881428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	126	753	2	ENST00000269571.5:c.2620G>A	p.Glu874Lys	p.E874K	ENST00000269571		874	Gag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098425	11098425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	129	471	1	ENST00000344626.4:c.947del	p.Pro316LeufsTer10	p.P316Lfs*10	ENST00000344626	NM_003072.3	315	Ccc/cc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162915	38162915	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199766344		P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	324	624	1	ENST00000317025.8:c.2291G>A	p.Arg764His	p.R764H	ENST00000317025	NM_023034.1	764	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106847	27106847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	189	566	2	ENST00000324856.7:c.6458G>A	p.Arg2153His	p.R2153H	ENST00000324856	NM_006015.4	2153	cGc/cAc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95578563	95578563	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	87	306	0	ENST00000343455.3:c.2062C>T	p.Arg688Ter	p.R688*	ENST00000343455	NM_177438.2	688	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993830	72993831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	75	586	0	ENST00000268489.5:c.214_215insG	p.Ser72CysfsTer47	p.S72Cfs*47	ENST00000268489	NM_006885.3	72	tcc/tGcc																																																																															
CALR	811	MSKCC	GRCh37	19	13054618	13054618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	143	541	0	ENST00000316448.5:c.1145C>T	p.Ala382Val	p.A382V	ENST00000316448	NM_004343.3	382	gCa/gTa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532613	63532613	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	208	906	0	ENST00000307078.5:c.1966C>T	p.Arg656Ter	p.R656*	ENST00000307078	NM_004655.3	656	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962899	2962899	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3735134		P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	218	867	0	ENST00000396946.4:c.2009C>T	p.Thr670Met	p.T670M	ENST00000396946	NM_032415.4	670	aCg/aTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439918	56439919	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	169	651	1	ENST00000407977.2:c.673dupC	p.Arg225ProfsTer34	p.R225Pfs*34	ENST00000407977		225	cgc/cCgc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94197330	94197330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	99	424	0	ENST00000323929.3:c.1174C>T	p.Pro392Ser	p.P392S	ENST00000323929	NM_005591.3	392	Cca/Tca																																																																															
RET	5979	MSKCC	GRCh37	10	43610167	43610167	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	183	820	1	ENST00000355710.3:c.2119G>T	p.Asp707Tyr	p.D707Y	ENST00000355710	NM_020975.4	707	Gat/Tat																																																																															
BCL6	604	MSKCC	GRCh37	3	187447236	187447236	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	182	687	0	ENST00000232014.4:c.957delC	p.Asn320MetfsTer4	p.N320Mfs*4	ENST00000232014	NM_001130845.1	319	ccC/cc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291474	10291474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	149	601	2	ENST00000340748.4:c.205C>T	p.Arg69Cys	p.R69C	ENST00000340748		69	Cgt/Tgt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546815	9546815	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	107	444	0	ENST00000353224.5:c.1207T>C	p.Ser403Pro	p.S403P	ENST00000353224	NM_177990.2	403	Tcc/Ccc																																																																															
MED12	9968	MSKCC	GRCh37	X	70346912	70346912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	160	616	0	ENST00000374080.3:c.2779G>A	p.Val927Met	p.V927M	ENST00000374080		927	Gtg/Atg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257832	16257832	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	154	497	0	ENST00000375759.3:c.5097A>C	p.Gln1699His	p.Q1699H	ENST00000375759	NM_015001.2	1699	caA/caC																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45799185	45799185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	169	677	1	ENST00000372115.3:c.206C>T	p.Ser69Leu	p.S69L	ENST00000372115	NM_001048171.1	69	tCa/tTa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012360	176012360	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	114	394	0	ENST00000367669.3:c.1574A>T	p.Asp525Val	p.D525V	ENST00000367669	NM_022457.5	525	gAt/gTt																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61213539	61213539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	122	375	0	ENST00000301761.2:c.497G>A	p.Arg166His	p.R166H	ENST00000301761	NM_017841.2	166	cGt/cAt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573750	64573750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	166	685	1	ENST00000337652.1:c.1018C>T	p.Arg340Trp	p.R340W	ENST00000337652	NM_130803.2	340	Cgg/Tgg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56493779	56493779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	144	479	0	ENST00000267101.3:c.3095G>A	p.Ser1032Asn	p.S1032N	ENST00000267101	NM_001982.3	1032	aGc/aAc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495400	56495400	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	189	612	0	ENST00000267101.3:c.3590A>G	p.Tyr1197Cys	p.Y1197C	ENST00000267101	NM_001982.3	1197	tAt/tGt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351931	89351931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	432	823	1	ENST00000301030.4:c.1019C>T	p.Thr340Met	p.T340M	ENST00000301030	NM_001256183.1	340	aCg/aTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435668	56435669	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	161	605	1	ENST00000407977.2:c.1468dup	p.Val490GlyfsTer15	p.V490Gfs*15	ENST00000407977		490	gtc/gGtc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39570510	39570510	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	35	171	0	ENST00000262039.4:c.706T>C	p.Tyr236His	p.Y236H	ENST00000262039	NM_002647.2	236	Tat/Cat																																																																															
MALT1	10892	MSKCC	GRCh37	18	56348494	56348494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	83	353	0	ENST00000348428.3:c.302G>A	p.Cys101Tyr	p.C101Y	ENST00000348428	NM_006785.3	101	tGc/tAc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976489	18976489	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	213	863	0	ENST00000262803.5:c.3139C>T	p.Gln1047Ter	p.Q1047*	ENST00000262803	NM_002911.3	1047	Cag/Tag																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607704	46607704	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	218	830	1	ENST00000263734.3:c.1898delG	p.Gly633AlafsTer63	p.G633Afs*63	ENST00000263734	NM_001430.4	631	atG/at																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626697	12626697	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	142	514	0	ENST00000251849.4:c.1592T>C	p.Val531Ala	p.V531A	ENST00000251849	NM_002880.3	531	gTc/gCc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391039	89391039	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	122	534	0	ENST00000336596.2:c.1105A>G	p.Asn369Asp	p.N369D	ENST00000336596	NM_005233.5	369	Aat/Gat																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980595	1980595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	204	660	2	ENST00000382891.5:c.4057C>T	p.Arg1353Trp	p.R1353W	ENST00000382891	NM_133335.3	1353	Cgg/Tgg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520464	176520464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	183	787	0	ENST00000292408.4:c.1309C>T	p.Arg437Cys	p.R437C	ENST00000292408	NM_213647.1	437	Cgt/Tgt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673751	30673751	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	156	519	0	ENST00000376406.3:c.3209T>C	p.Leu1070Pro	p.L1070P	ENST00000376406	NM_014641.2	1070	cTt/cCt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151875096	151875097	+	splice_acceptor_variant	Splice_Site	INS	-	-	TTT			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	17	83	0	ENST00000262189.6:c.7443-4_7443-2dup		p.X2481_splice	ENST00000262189	NM_170606.2	2481																																																																																
FGFR1	2260	MSKCC	GRCh37	8	38271704	38271704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1242	222	893	0	ENST00000425967.3:c.2245C>T	p.Arg749Cys	p.R749C	ENST00000425967	NM_001174067.1	749	Cgc/Tgc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039692	47039692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	217	830	0	ENST00000329236.7:c.910G>A	p.Ala304Thr	p.A304T	ENST00000329236	NM_001204466.1	304	Gcc/Acc																																																																															
MED12	9968	MSKCC	GRCh37	X	70344188	70344188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	105	470	1	ENST00000374080.3:c.1924G>A	p.Asp642Asn	p.D642N	ENST00000374080		642	Gat/Aat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACCCCC			P-0052638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	33	812	0	ENST00000275493.2:c.2311_2319dup	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	gac/gACAACCCCCac																																																																															
DDR2	4921	MSKCC	GRCh37	1	162741849	162741849	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	148	600	0	ENST00000367921.3:c.1540G>C	p.Gly514Arg	p.G514R	ENST00000367921	NM_006182.2	514	Ggc/Cgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653807	89653807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	269	442	0	ENST00000371953.3:c.105G>A	p.Met35Ile	p.M35I	ENST00000371953	NM_000314.4	35	atG/atA																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114169	115114169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	500	780	2	ENST00000257566.3:c.1048G>A	p.Ala350Thr	p.A350T	ENST00000257566	NM_016569.3	350	Gcc/Acc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423508	88423508	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	267	586	0	ENST00000360948.2:c.2327A>T	p.Asn776Ile	p.N776I	ENST00000360948	NM_001012338.2	776	aAc/aTc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680740	88680740	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	355	913	1	ENST00000360948.2:c.517C>A	p.Leu173Ile	p.L173I	ENST00000360948	NM_001012338.2	173	Ctc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0052695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	654	1040	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30733020	30733020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	125	605	1	ENST00000359013.4:c.1708G>T	p.Asp570Tyr	p.D570Y	ENST00000359013	NM_001024847.2	570	Gac/Tac																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197299	26197299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	340	844	0	ENST00000356476.2:c.180G>T	p.Glu60Asp	p.E60D	ENST00000356476		60	gaG/gaT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93973599	93973599	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	108	453	0	ENST00000369303.4:c.1777G>C	p.Asp593His	p.D593H	ENST00000369303	NM_004440.3	593	Gat/Cat																																																																															
PREX2	80243	MSKCC	GRCh37	8	68989680	68989680	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	241	678	0	ENST00000288368.4:c.1618T>C	p.Cys540Arg	p.C540R	ENST00000288368	NM_024870.2	540	Tgt/Cgt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981857	70981857	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	605	984	0	ENST00000276594.2:c.239C>A	p.Pro80Gln	p.P80Q	ENST00000276594	NM_024504.3	80	cCg/cAg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5077512	5077512	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0052695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	170	467	1	ENST00000381652.3:c.1924A>T	p.Lys642Ter	p.K642*	ENST00000381652	NM_004972.3	642	Aaa/Taa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180601	56180602	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	T			P-0052695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	174	519	0	ENST00000399503.3:c.3930_3931delinsT	p.Leu1310PhefsTer26	p.L1310Ffs*26	ENST00000399503	NM_005921.1	1310	ttGGga/ttTga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0052696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	143	868	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532827	187532827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	150	660	0	ENST00000441802.2:c.9566G>A	p.Arg3189Lys	p.R3189K	ENST00000441802	NM_005245.3	3189	aGa/aAa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157505492	157505502	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGGGAGGAG	GTGGGGAGGAG	-			P-0052696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	95	593	0	ENST00000346085.5:c.3473_3483del	p.Arg1158ProfsTer24	p.R1158Pfs*24	ENST00000346085	NM_020732.3	1158	cGTGGGGAGGAG/c																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	392	407	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	146	311	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0010083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	142	343	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	283	561	0	ENST00000269305.4:c.644G>A	p.Ser215Asn	p.S215N	ENST00000269305	NM_001126112.2	215	aGt/aAt																																																																															
ALK	238	MSKCC	GRCh37	2	29416559	29416559	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	98	443	0	ENST00000389048.3:c.4394T>C	p.Val1465Ala	p.V1465A	ENST00000389048	NM_004304.4	1465	gTc/gCc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202801	128202801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	46	391	0	ENST00000341105.2:c.919C>T	p.Arg307Trp	p.R307W	ENST00000341105	NM_032638.4	307	Cgg/Tgg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146538	185146538	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	177	344	0	ENST00000265026.3:c.169A>T	p.Ile57Phe	p.I57F	ENST00000265026	NM_004721.4	57	Atc/Ttc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6045573	6045573	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148270248		P-0010083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	70	304	0	ENST00000265849.7:c.113C>T	p.Ala38Val	p.A38V	ENST00000265849	NM_000535.5	38	gCg/gTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15995224	15995224	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	49	532	2	ENST00000268712.3:c.2969C>A	p.Ser990Tyr	p.S990Y	ENST00000268712	NM_006311.3	990	tCt/tAt																																																																															
TOP1	7150	MSKCC	GRCh37	20	39704899	39704900	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0010083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	269	636	1	ENST00000361337.2:c.245_246del	p.Lys82ArgfsTer30	p.K82Rfs*30	ENST00000361337	NM_003286.2	82	AAa/a																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0051055-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			547	196	512	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0051055-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			549	136	634	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0051055-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			453	40	368	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0051055-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			715	48	812	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191118	185191118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051055-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			622	166	709	0	ENST00000265026.3:c.1999G>A	p.Ala667Thr	p.A667T	ENST00000265026	NM_004721.4	667	Gcc/Acc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73336064	73336064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051055-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	65	254	0	ENST00000377767.4:c.2339G>A	p.Arg780Lys	p.R780K	ENST00000377767	NM_014953.3	780	aGa/aAa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868268	37868268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051055-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1170	72	825	1	ENST00000269571.5:c.989G>A	p.Arg330Gln	p.R330Q	ENST00000269571		330	cGg/cAg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577265	64577266	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0051055-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			636	319	841	0	ENST00000337652.1:c.315_316dup	p.Tyr106SerfsTer14	p.Y106Sfs*14	ENST00000337652	NM_130803.2	106	tat/tCTat																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56490980	56490980	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			572	352	704	0	ENST00000267101.3:c.2426A>G	p.Gln809Arg	p.Q809R	ENST00000267101	NM_001982.3	809	cAg/cGg																																																																															
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0051616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			867	85	864	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158417	26158417	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1666	113	1048	0	ENST00000289316.2:c.20C>G	p.Ser7Cys	p.S7C	ENST00000289316	NM_138720.2	7	tCt/tGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29562657	29562660	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-			P-0051616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	161	660	0	ENST00000358273.4:c.3739_3742delTTTG	p.Phe1247IlefsTer18	p.F1247Ifs*18	ENST00000358273	NM_001042492.2	1246	cTGTTt/ct																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121437328	121437328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			995	126	1047	0	ENST00000257555.6:c.1666C>T	p.His556Tyr	p.H556Y	ENST00000257555		556	Cac/Tac																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553102	106553102	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs137921759		P-0051616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			749	93	844	0	ENST00000369096.4:c.1067C>G	p.Pro356Arg	p.P356R	ENST00000369096	NM_001198.3	356	cCt/cGt																																																																															
ATRX	546	MSKCC	GRCh37	X	76875906	76875906	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			601	75	747	0	ENST00000373344.5:c.5229G>T	p.Arg1743Ser	p.R1743S	ENST00000373344	NM_000489.3	1743	agG/agT																																																																															
MTOR	2475	MSKCC	GRCh37	1	11318641	11318641	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			638	52	570	0	ENST00000361445.4:c.172G>C	p.Glu58Gln	p.E58Q	ENST00000361445	NM_004958.3	58	Gag/Cag																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46724393	46724393	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			764	74	732	0	ENST00000371975.4:c.246C>G	p.Phe82Leu	p.F82L	ENST00000371975	NM_003579.3	82	ttC/ttG																																																																															
ATM	472	MSKCC	GRCh37	11	108115575	108115575	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			563	57	603	0	ENST00000278616.4:c.723G>C	p.Lys241Asn	p.K241N	ENST00000278616	NM_000051.3	241	aaG/aaC																																																																															
MGA	23269	MSKCC	GRCh37	15	42019488	42019488	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			635	78	743	0	ENST00000219905.7:c.3541G>C	p.Glu1181Gln	p.E1181Q	ENST00000219905	NM_001164273.1	1181	Gag/Cag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134376	2134376	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	220	1026	0	ENST00000219476.3:c.4153T>A	p.Ser1385Thr	p.S1385T	ENST00000219476	NM_000548.3	1385	Tcc/Acc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56870557	56870557	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			831	79	611	2	ENST00000308159.5:c.1827C>G	p.Ile609Met	p.I609M	ENST00000308159	NM_014669.4	609	atC/atG																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518732	176518732	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			988	142	999	0	ENST00000292408.4:c.650C>A	p.Ser217Ter	p.S217*	ENST00000292408	NM_213647.1	217	tCg/tAg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228000	53228000	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051616-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	92	1049	0	ENST00000375401.3:c.2314A>T	p.Thr772Ser	p.T772S	ENST00000375401	NM_004187.3	772	Acc/Tcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0051881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			107	57	379	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0051881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	181	548	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428257	33428257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			327	86	693	0	ENST00000335858.7:c.530G>T	p.Gly177Val	p.G177V	ENST00000335858	NM_133629.2	177	gGc/gTc																																																																															
SMO	6608	MSKCC	GRCh37	7	128829040	128829042	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0051881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			85	10	105	2	ENST00000249373.3:c.67_69delCTG	p.Leu23del	p.L23del	ENST00000249373	NM_005631.4	16	ggGCTg/ggg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115282315	115282315	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0051881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			111	57	384	0	ENST00000438362.2:c.335G>T	p.Gly112Val	p.G112V	ENST00000438362	NM_001242891.1	112	gGa/gTa																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281369	49281369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	120	889	0	ENST00000282018.3:c.416C>A	p.Ala139Glu	p.A139E	ENST00000282018	NM_020377.2	139	gCa/gAa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222217	2222217	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			428	111	964	0	ENST00000398665.3:c.3049C>T	p.Gln1017Ter	p.Q1017*	ENST00000398665	NM_032482.2	1017	Cag/Tag																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354206	15354206	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			483	108	972	0	ENST00000263377.2:c.2674C>A	p.Pro892Thr	p.P892T	ENST00000263377	NM_058243.2	892	Cca/Aca																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436656	52436661	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	TCATCG	TCATCG	-			P-0051881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			297	186	806	0	ENST00000460680.1:c.2013_2018del	p.Tyr671_Glu673delinsTer	p.Y671_E673delins*	ENST00000460680	NM_004656.3	671	taCGATGAg/tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256718	16256718	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	90	501	0	ENST00000375759.3:c.3983T>C	p.Leu1328Pro	p.L1328P	ENST00000375759	NM_015001.2	1328	cTa/cCa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71019958	71019958	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0052131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	45	223	0	ENST00000318789.4:c.1653-2A>G		p.X551_splice	ENST00000318789	NM_032682.5	551																																																																																
TP53	7157	MSKCC	GRCh37	17	7579592	7579592	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-			P-0052131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	87	525	0	ENST00000269305.4:c.97-2delA		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
SOS1	6654	MSKCC	GRCh37	2	39249896	39249896	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs201624023		P-0052131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	52	678	1	ENST00000402219.2:c.1673T>C	p.Met558Thr	p.M558T	ENST00000402219	NM_005633.3	558	aTg/aCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0052144-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			293	220	510	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052144-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			497	152	760	2	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108180982	108180982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052144-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			202	90	458	0	ENST00000278616.4:c.5858C>T	p.Thr1953Ile	p.T1953I	ENST00000278616	NM_000051.3	1953	aCa/aTa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023735	31023735	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052144-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			694	247	656	0	ENST00000375687.4:c.3220C>T	p.Gln1074Ter	p.Q1074*	ENST00000375687	NM_015338.5	1074	Caa/Taa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937104	36937104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052144-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			591	59	636	0	ENST00000361632.4:c.1215G>T	p.Glu405Asp	p.E405D	ENST00000361632		405	gaG/gaT																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78433321	78433321	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052144-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	46	527	0	ENST00000370768.2:c.280C>T	p.Gln94Ter	p.Q94*	ENST00000370768	NM_003902.3	94	Cag/Tag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948310	71948310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052144-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			708	197	840	0	ENST00000298229.2:c.3022C>T	p.Pro1008Ser	p.P1008S	ENST00000298229	NM_001567.3	1008	Cct/Tct																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118359387	118359387	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052144-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			349	35	493	0	ENST00000534358.1:c.4391A>C	p.Glu1464Ala	p.E1464A	ENST00000534358	NM_005933.3	1464	gAg/gCg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112014	115112014	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052144-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			481	226	710	0	ENST00000257566.3:c.1726G>C	p.Ala576Pro	p.A576P	ENST00000257566	NM_016569.3	576	Gcc/Ccc																																																																															
MGA	23269	MSKCC	GRCh37	15	41991357	41991357	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0052144-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	91	527	0	ENST00000219905.7:c.2188+1del		p.V730fs	ENST00000219905	NM_001164273.1	730	Gtg/tg																																																																															
MGA	23269	MSKCC	GRCh37	15	42042379	42042379	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0052144-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			422	80	708	0	ENST00000219905.7:c.6574G>T	p.Glu2192Ter	p.E2192*	ENST00000219905	NM_001164273.1	2192	Gaa/Taa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198268461	198268461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052144-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	152	529	0	ENST00000335508.6:c.1567G>A	p.Ala523Thr	p.A523T	ENST00000335508	NM_012433.2	523	Gct/Act																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31390197	31390197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052144-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			672	77	540	0	ENST00000328111.2:c.2152C>T	p.Pro718Ser	p.P718S	ENST00000328111	NM_006892.3	718	Cca/Tca																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041658	47041658	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052144-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	88	705	0	ENST00000329236.7:c.1649del	p.Glu550GlyfsTer76	p.E550Gfs*76	ENST00000329236	NM_001204466.1	550	gAg/gg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410963	63410963	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052144-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			591	104	729	0	ENST00000330258.3:c.2204C>A	p.Ala735Glu	p.A735E	ENST00000330258	NM_152424.3	735	gCa/gAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0052145-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			550	241	521	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574035	7574035	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0052145-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			461	112	534	0	ENST00000269305.4:c.994-2A>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
PPARG	5468	MSKCC	GRCh37	3	12458417	12458417	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052145-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			575	89	743	0	ENST00000287820.6:c.1034T>A	p.Leu345His	p.L345H	ENST00000287820	NM_015869.4	345	cTc/cAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589592	67589594	+	inframe_deletion	In_Frame_Del	DEL	ATA	ATA	-			P-0052159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	51	301	0	ENST00000274335.5:c.1356_1358del	p.Asn453del	p.N453del	ENST00000274335		452	tATAac/tac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831069	72831069	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	71	531	1	ENST00000268489.5:c.5512C>T	p.Gln1838Ter	p.Q1838*	ENST00000268489	NM_006885.3	1838	Cag/Tag																																																																															
PALB2	79728	MSKCC	GRCh37	16	23619236	23619236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	98	677	0	ENST00000261584.4:c.3299C>T	p.Thr1100Ile	p.T1100I	ENST00000261584	NM_024675.3	1100	aCt/aTt																																																																															
EP300	2033	MSKCC	GRCh37	22	41548297	41548297	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	67	331	0	ENST00000263253.7:c.3085C>G	p.Gln1029Glu	p.Q1029E	ENST00000263253	NM_001429.3	1029	Cag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0052160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	370	814	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520328	176520328	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200070761		P-0052160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	225	732	0	ENST00000292408.4:c.1247G>A	p.Arg416Gln	p.R416Q	ENST00000292408	NM_213647.1	416	cGa/cAa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883623	37883623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	290	1184	2	ENST00000269571.5:c.3235G>A	p.Glu1079Lys	p.E1079K	ENST00000269571		1079	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0052161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	245	467	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68835581	68835581	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0052161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	291	573	0	ENST00000261769.5:c.172G>T	p.Glu58Ter	p.E58*	ENST00000261769	NM_004360.3	58	Gaa/Taa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115725	8115725	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	205	408	0	ENST00000346208.3:c.1071G>C	p.Lys357Asn	p.K357N	ENST00000346208		357	aaG/aaC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972306	32972308	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0052162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	50	400	0	ENST00000380152.3:c.9658_9660del	p.Pro3220del	p.P3220del	ENST00000380152		3219	tCTCct/tct																																																																															
MGA	23269	MSKCC	GRCh37	15	42041867	42041870	+	frameshift_variant	Frame_Shift_Del	DEL	TGAA	TGAA	-			P-0052162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	40	557	0	ENST00000219905.7:c.6065_6068del	p.Asn2022IlefsTer79	p.N2022Ifs*79	ENST00000219905	NM_001164273.1	2021	cTGAAt/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0052163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	165	947	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																															
APC	324	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0052163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	32	406	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048698	180048698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	44	946	0	ENST00000261937.6:c.1864G>A	p.Ala622Thr	p.A622T	ENST00000261937	NM_182925.4	622	Gcc/Acc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539467	187539467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	46	481	2	ENST00000441802.2:c.8273G>A	p.Gly2758Glu	p.G2758E	ENST00000441802	NM_005245.3	2758	gGg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112173854	112173854	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0052163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	71	365	0	ENST00000257430.4:c.2563G>T	p.Glu855Ter	p.E855*	ENST00000257430	NM_000038.5	855	Gaa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421005	49421006	+	frameshift_variant	Frame_Shift_Ins	INS	GA	GA	AAG			P-0052163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	17	385	1	ENST00000301067.7:c.14743_14744delinsCTT	p.Ser4915LeufsTer17	p.S4915Lfs*17	ENST00000301067	NM_003482.3	4915	TCc/CTTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0052164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	186	548	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0052164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	272	448	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220578	1220578	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0052164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	350	830	1	ENST00000326873.7:c.598-2A>G		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11098566	11098566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	408	766	0	ENST00000344626.4:c.1084G>A	p.Asp362Asn	p.D362N	ENST00000344626	NM_003072.3	362	Gac/Aac																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2097724	2097724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	139	640	0	ENST00000219066.1:c.125G>A	p.Arg42Lys	p.R42K	ENST00000219066	NM_002528.5	42	aGa/aAa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66233081	66233081	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	343	362	0	ENST00000273854.3:c.1918G>T	p.Gly640Trp	p.G640W	ENST00000273854	NM_004439.5	640	Ggg/Tgg																																																																															
TET2	54790	MSKCC	GRCh37	4	106196621	106196621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	280	535	0	ENST00000380013.4:c.4954C>T	p.Gln1652Ter	p.Q1652*	ENST00000380013	NM_001127208.2	1652	Cag/Tag																																																																															
TET2	54790	MSKCC	GRCh37	4	106156180	106156180	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	127	382	0	ENST00000380013.4:c.1081C>T	p.Gln361Ter	p.Q361*	ENST00000380013	NM_001127208.2	361	Caa/Taa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857980	9857980	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	274	604	0	ENST00000330684.3:c.3421C>A	p.Leu1141Met	p.L1141M	ENST00000330684	NM_001134407.1	1141	Ctg/Atg																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518700	204518700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	91	347	0	ENST00000367182.3:c.1363G>A	p.Gly455Ser	p.G455S	ENST00000367182	NM_001278516.1	455	Ggc/Agc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589702	69589702	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	34	60	0	ENST00000168712.1:c.151G>T	p.Val51Leu	p.V51L	ENST00000168712	NM_002007.2	51	Gtg/Ttg																																																																															
ALK	238	MSKCC	GRCh37	2	29455298	29455298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	253	581	0	ENST00000389048.3:c.2504del	p.Pro835ArgfsTer4	p.P835Rfs*4	ENST00000389048	NM_004304.4	835	cCg/cg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021746	71021746	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199658468		P-0052164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	129	388	1	ENST00000318789.4:c.1612G>A	p.Glu538Lys	p.E538K	ENST00000318789	NM_032682.5	538	Gaa/Aaa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149433953	149433953	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	236	984	0	ENST00000286301.3:c.2695C>A	p.His899Asn	p.H899N	ENST00000286301	NM_005211.3	899	Cac/Aac																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521912	157521912	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0052164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	257	587	0	ENST00000346085.5:c.4184A>T	p.Gln1395Leu	p.Q1395L	ENST00000346085	NM_020732.3	1395	cAg/cTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81339524	81339524	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	354	465	0	ENST00000222390.5:c.1480C>G	p.Arg494Gly	p.R494G	ENST00000222390	NM_000601.4	494	Cga/Gga																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139407915	139407915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	464	881	0	ENST00000277541.6:c.2282C>T	p.Pro761Leu	p.P761L	ENST00000277541	NM_017617.3	761	cCt/cTt																																																																															
BTK	695	MSKCC	GRCh37	X	100613606	100613606	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0052164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	151	693	0	ENST00000308731.7:c.973G>T	p.Gly325Trp	p.G325W	ENST00000308731	NM_000061.2	325	Ggg/Tgg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123220512	123220512	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	184	676	0	ENST00000218089.9:c.3169A>C	p.Met1057Leu	p.M1057L	ENST00000218089	NM_001042749.1	1057	Atg/Ctg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	119	446	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	61	367	0				ENST00000310581	NM_198253.2																																																																																	
HGF	3082	MSKCC	GRCh37	7	81346592	81346592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	77	378	0	ENST00000222390.5:c.1361C>T	p.Thr454Met	p.T454M	ENST00000222390	NM_000601.4	454	aCg/aTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968199	134968199	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	68	611	0	ENST00000398015.3:c.2712C>A	p.Asp904Glu	p.D904E	ENST00000398015	NM_004441.4	904	gaC/gaA																																																																															
FH	2271	MSKCC	GRCh37	1	241683021	241683021	+	start_lost	Translation_Start_Site	SNP	A	A	T	rs201261794		P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	44	599	0	ENST00000366560.3:c.2T>A	p.Met1?	p.M1?	ENST00000366560	NM_000143.3	1	aTg/aAg																																																																															
RET	5979	MSKCC	GRCh37	10	43606901	43606901	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	83	895	0	ENST00000355710.3:c.1510G>C	p.Val504Leu	p.V504L	ENST00000355710	NM_020975.4	504	Gtg/Ctg																																																																															
WT1	7490	MSKCC	GRCh37	11	32456633	32456633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	39	251	0	ENST00000332351.3:c.259G>T	p.Gly87Cys	p.G87C	ENST00000332351	NM_024426.4	87	Ggt/Tgt																																																																															
CCND2	894	MSKCC	GRCh37	12	4383273	4383273	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	90	553	0	ENST00000261254.3:c.67G>T	p.Asp23Tyr	p.D23Y	ENST00000261254	NM_001759.3	23	Gac/Tac																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111884964	111884964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	99	651	0	ENST00000341259.2:c.962C>T	p.Ser321Leu	p.S321L	ENST00000341259	NM_005475.2	321	tCa/tTa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32945174	32945174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	48	443	0	ENST00000380152.3:c.8569G>A	p.Ala2857Thr	p.A2857T	ENST00000380152		2857	Gcc/Acc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281827	49281827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	69	687	0	ENST00000282018.3:c.874G>T	p.Ala292Ser	p.A292S	ENST00000282018	NM_020377.2	292	Gcc/Tcc																																																																															
BLM	641	MSKCC	GRCh37	15	91303970	91303970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	99	618	0	ENST00000355112.3:c.1367C>T	p.Ser456Leu	p.S456L	ENST00000355112	NM_000057.2	456	tCa/tTa																																																																															
BLM	641	MSKCC	GRCh37	15	91304042	91304042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	90	679	0	ENST00000355112.3:c.1439C>T	p.Ser480Phe	p.S480F	ENST00000355112	NM_000057.2	480	tCt/tTt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645081	67645081	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	105	793	0	ENST00000264010.4:c.346G>T	p.Val116Phe	p.V116F	ENST00000264010	NM_006565.3	116	Gtt/Ttt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5240312	5240312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	118	833	0	ENST00000357368.4:c.1602G>T	p.Glu534Asp	p.E534D	ENST00000357368	NM_002850.3	534	gaG/gaT																																																																															
CIC	23152	MSKCC	GRCh37	19	42796538	42796538	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	97	916	0	ENST00000575354.2:c.3095A>G	p.Tyr1032Cys	p.Y1032C	ENST00000575354	NM_015125.3	1032	tAc/tGc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198288699	198288699	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	76	379	0	ENST00000335508.6:c.29-1G>A		p.X10_splice	ENST00000335508	NM_012433.2	10																																																																																
BARD1	580	MSKCC	GRCh37	2	215645872	215645872	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	68	662	0	ENST00000260947.4:c.726C>A	p.Phe242Leu	p.F242L	ENST00000260947	NM_000465.2	242	ttC/ttA																																																																															
SRC	6714	MSKCC	GRCh37	20	36026155	36026155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	118	828	1	ENST00000358208.4:c.757C>A	p.Pro253Thr	p.P253T	ENST00000358208		253	Ccg/Acg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89456456	89456456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	74	367	0	ENST00000336596.2:c.1632G>T	p.Met544Ile	p.M544I	ENST00000336596	NM_005233.5	544	atG/atT																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146754	185146754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	85	761	1	ENST00000265026.3:c.385G>A	p.Gly129Arg	p.G129R	ENST00000265026	NM_004721.4	129	Ggg/Agg																																																																															
HGF	3082	MSKCC	GRCh37	7	81392041	81392042	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	41	306	1	ENST00000222390.5:c.235_236delinsTT	p.Gly79Leu	p.G79L	ENST00000222390	NM_000601.4	79	GGa/TTa																																																																															
SMO	6608	MSKCC	GRCh37	7	128852191	128852192	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	267	853	1	ENST00000249373.3:c.2263_2264delinsAA	p.Pro755Asn	p.P755N	ENST00000249373	NM_005631.4	755	CCc/AAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845366	151845366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	246	614	0	ENST00000262189.6:c.13646G>T	p.Arg4549Leu	p.R4549L	ENST00000262189	NM_170606.2	4549	cGc/cTc																																																																															
EP300	2033	MSKCC	GRCh37	22	41564789	41564792	+	frameshift_variant	Frame_Shift_Del	DEL	GAAG	GAAG	AAA			P-0052258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	85	651	1	ENST00000263253.7:c.4090_4093delinsAAA	p.Glu1364LysfsTer46	p.E1364Kfs*46	ENST00000263253	NM_001429.3	1364	GAAGaa/AAAaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0052263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	35	429	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577560	7577560	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057520002		P-0052263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	139	592	0	ENST00000269305.4:c.721T>C	p.Ser241Pro	p.S241P	ENST00000269305	NM_001126112.2	241	Tcc/Ccc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056500	26056500	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	50	301	0	ENST00000343677.2:c.157G>C	p.Glu53Gln	p.E53Q	ENST00000343677	NM_005319.3	53	Gag/Cag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714415	40714415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	72	574	1	ENST00000373198.4:c.3982G>A	p.Asp1328Asn	p.D1328N	ENST00000373198	NM_133170.3	1328	Gac/Aac																																																																															
NBN	4683	MSKCC	GRCh37	8	90965846	90965846	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	18	390	0	ENST00000265433.3:c.1471G>C	p.Glu491Gln	p.E491Q	ENST00000265433	NM_002485.4	491	Gaa/Caa																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724175	112724175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	21	399	0	ENST00000369452.4:c.59C>T	p.Ser20Leu	p.S20L	ENST00000369452	NM_007373.3	20	tCa/tTa																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856453	111856453	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	27	262	0	ENST00000341259.2:c.504G>T	p.Glu168Asp	p.E168D	ENST00000341259	NM_005475.2	168	gaG/gaT																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687075	37687075	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	112	583	0	ENST00000447079.4:c.3979G>C	p.Glu1327Gln	p.E1327Q	ENST00000447079	NM_015083.1	1327	Gag/Cag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176722059	176722059	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	41	502	0	ENST00000439151.2:c.7690G>C	p.Glu2564Gln	p.E2564Q	ENST00000439151	NM_022455.4	2564	Gag/Cag																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069124	5069124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	12	500	0	ENST00000381652.3:c.1429C>G	p.Leu477Val	p.L477V	ENST00000381652	NM_004972.3	477	Ctt/Gtt																																																																															
ARAF	369	MSKCC	GRCh37	X	47422666	47422666	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	84	677	1	ENST00000377045.4:c.138C>A	p.Asp46Glu	p.D46E	ENST00000377045	NM_001654.4	46	gaC/gaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0052264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	129	378	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0052264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	65	368	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579310	7579310	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0052264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	126	492	0	ENST00000269305.4:c.375+2T>C		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971189	21971189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	114	421	0	ENST00000304494.5:c.169del	p.Ala57ProfsTer89	p.A57Pfs*89	ENST00000304494	NM_000077.4	57	Gcc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0052268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	291	473	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RHOA	387	MSKCC	GRCh37	3	49400051	49400051	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	230	414	0	ENST00000418115.1:c.286C>G	p.Pro96Ala	p.P96A	ENST00000418115	NM_001664.2	96	Cca/Gca																																																																															
TERT	7015	MSKCC	GRCh37	5	1282653	1282653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	278	660	0	ENST00000310581.5:c.1660G>A	p.Val554Ile	p.V554I	ENST00000310581	NM_198253.2	554	Gtc/Atc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0052320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	19	389	0	ENST00000347630.2:c.260A>C	p.Tyr87Ser	p.Y87S	ENST00000347630	NM_001007230.1	87	tAc/tCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0052321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	173	526	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0052321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	34	253	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341255	8341255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	37	258	0	ENST00000356435.5:c.4961C>T	p.Ser1654Leu	p.S1654L	ENST00000356435		1654	tCa/tTa																																																																															
AR	367	MSKCC	GRCh37	X	66766603	66766603	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0052321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	81	646	2	ENST00000374690.3:c.1615C>A	p.Arg539Ser	p.R539S	ENST00000374690	NM_000044.3	539	Cgt/Agt																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271447	26271447	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	99	692	0	ENST00000305910.3:c.166C>G	p.Gln56Glu	p.Q56E	ENST00000305910	NM_003534.2	56	Cag/Gag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11193209	11193209	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	58	530	0	ENST00000361445.4:c.5292C>G	p.Ile1764Met	p.I1764M	ENST00000361445	NM_004958.3	1764	atC/atG																																																																															
CALR	811	MSKCC	GRCh37	19	13054683	13054683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	46	440	0	ENST00000316448.5:c.1210G>A	p.Asp404Asn	p.D404N	ENST00000316448	NM_004343.3	404	Gat/Aat																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379709	17379709	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	99	745	0	ENST00000359435.4:c.94G>C	p.Glu32Gln	p.E32Q	ENST00000359435	NM_001033549.1	32	Gaa/Caa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117704672	117704672	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0052321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	47	177	0	ENST00000368508.3:c.2305-1G>C		p.X769_splice	ENST00000368508	NM_002944.2	769																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151859220	151859220	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	45	276	0	ENST00000262189.6:c.11442G>C	p.Gln3814His	p.Q3814H	ENST00000262189	NM_170606.2	3814	caG/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577578	7577579	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTAGTGGATGGTGGTACAGTCAGAGCC			P-0052322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	37	519	0	ENST00000269305.4:c.676_702dup	p.Gly226_Tyr234dup	p.G226_Y234dup	ENST00000269305	NM_001126112.2	226	-/GGCTCTGACTGTACCACCATCCACTAC																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971115	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTCGGGTGAGAGTGGCG	GGGTCGGGTGAGAGTGGCG	-			P-0052322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1234	275	634	0	ENST00000304494.5:c.225_243del	p.Ala76CysfsTer64	p.A76Cfs*64	ENST00000304494	NM_000077.4	75	ccCGCCACTCTCACCCGACCC/cc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650553	48650554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	14	754	0	ENST00000376670.3:c.523_524insA	p.Pro175HisfsTer26	p.P175Hfs*26	ENST00000376670	NM_002049.3	175	ccc/cAcc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64574560	64574560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	241	795	0	ENST00000337652.1:c.850del	p.Ala284ProfsTer2	p.A284Pfs*2	ENST00000337652	NM_130803.2	284	Gcc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0052325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	50	665	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0052325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	62	408	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0052325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	13	421	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713341	40713341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	50	590	0	ENST00000373198.4:c.4174C>T	p.Arg1392Cys	p.R1392C	ENST00000373198	NM_133170.3	1392	Cgt/Tgt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289231	33289231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	50	489	0	ENST00000374542.5:c.321C>A	p.Asn107Lys	p.N107K	ENST00000374542	NM_001141970.1	107	aaC/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0052327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	156	703	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0052327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	79	41	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502382	186502384	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0052327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	118	266	0	ENST00000323963.5:c.109_111del	p.Asp37del	p.D37del	ENST00000323963		35	ttTGAt/ttt																																																																															
MSH3	4437	MSKCC	GRCh37	5	80021297	80021297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	239	150	0	ENST00000265081.6:c.1366G>A	p.Glu456Lys	p.E456K	ENST00000265081	NM_002439.4	456	Gaa/Aaa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355936	73355936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	166	762	1	ENST00000377767.4:c.35G>T	p.Arg12Leu	p.R12L	ENST00000377767	NM_014953.3	12	cGg/cTg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745632	162745632	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0052327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1458	97	419	0	ENST00000367921.3:c.2047A>C	p.Ser683Arg	p.S683R	ENST00000367921	NM_006182.2	683	Agt/Cgt																																																																															
TET1	80312	MSKCC	GRCh37	10	70333735	70333735	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0052327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	420	548	1	ENST00000373644.4:c.1640A>T	p.Gln547Leu	p.Q547L	ENST00000373644	NM_030625.2	547	cAg/cTg																																																																															
PGR	5241	MSKCC	GRCh37	11	100920730	100920730	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	90	203	0	ENST00000325455.5:c.2418G>C	p.Gln806His	p.Q806H	ENST00000325455	NM_001202474.3	806	caG/caC																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43699682	43699682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	176	662	0	ENST00000382044.4:c.5833C>A	p.Pro1945Thr	p.P1945T	ENST00000382044	NM_001141980.1	1945	Cct/Act																																																																															
PALB2	79728	MSKCC	GRCh37	16	23614920	23614920	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	118	487	0	ENST00000261584.4:c.3421G>C	p.Asp1141His	p.D1141H	ENST00000261584	NM_024675.3	1141	Gac/Cac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097672	11097672	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	201	1011	0	ENST00000344626.4:c.852G>T	p.Trp284Cys	p.W284C	ENST00000344626	NM_003072.3	284	tgG/tgT																																																																															
CIC	23152	MSKCC	GRCh37	19	42793396	42793396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	171	873	0	ENST00000575354.2:c.1198C>A	p.Pro400Thr	p.P400T	ENST00000575354	NM_015125.3	400	Ccc/Acc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626112	12626112	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	80	462	0	ENST00000251849.4:c.1848C>G	p.Ile616Met	p.I616M	ENST00000251849	NM_002880.3	616	atC/atG																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125386	47125386	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	117	347	0	ENST00000409792.3:c.5884C>G	p.Pro1962Ala	p.P1962A	ENST00000409792	NM_014159.6	1962	Ccc/Gcc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100041	157100049	+	inframe_deletion	In_Frame_Del	DEL	AGGAGGAGC	AGGAGGAGC	-			P-0052327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	12	89	1	ENST00000346085.5:c.983_991del	p.Gly328_Gly330del	p.G328_G330del	ENST00000346085	NM_020732.3	326	ggAGGAGGAGCa/gga																																																																															
STAG2	10735	MSKCC	GRCh37	X	123205106	123205106	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	70	245	0	ENST00000218089.9:c.2466G>C	p.Gln822His	p.Q822H	ENST00000218089	NM_001042749.1	822	caG/caC																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61213469	61213484	+	frameshift_variant	Frame_Shift_Del	DEL	TTTGCTAAAAACAAAA	TTTGCTAAAAACAAAA	AC			P-0052327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	108	432	3	ENST00000301761.2:c.427_442delinsAC	p.Phe143ThrfsTer12	p.F143Tfs*12	ENST00000301761	NM_017841.2	143	TTTGCTAAAAACAAAAac/ACac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0052340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	75	489	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436839	110436839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	149	916	0	ENST00000375856.3:c.1562C>T	p.Pro521Leu	p.P521L	ENST00000375856	NM_003749.2	521	cCc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112175324	112175324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0052340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	71	309	0	ENST00000257430.4:c.4033G>T	p.Glu1345Ter	p.E1345*	ENST00000257430	NM_000038.5	1345	Gaa/Taa																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856422	111856422	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	27	267	3	ENST00000341259.2:c.473A>C	p.His158Pro	p.H158P	ENST00000341259	NM_005475.2	158	cAc/cCc																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73774975	73775001	+	inframe_deletion	In_Frame_Del	DEL	CAGCTTCCGGATGAGCAGCTCGGTCGA	CAGCTTCCGGATGAGCAGCTCGGTCGA	-			P-0052340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	78	404	0	ENST00000254810.4:c.172_198del	p.Ser58_Leu66del	p.S58_L66del	ENST00000254810	NM_005324.3	58	TCGACCGAGCTGCTCATCCGGAAGCTG/-																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056019	26056021	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0052340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	135	306	0	ENST00000343677.2:c.636_638delGAA	p.Lys213del	p.K213del	ENST00000343677	NM_005319.3	212	aaGAAa/aaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69103959	69103959	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0052343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	142	551	0	ENST00000288368.4:c.4349C>A	p.Ala1450Glu	p.A1450E	ENST00000288368	NM_024870.2	1450	gCa/gAa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245638	46245638	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0052343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	233	401	1	ENST00000334344.6:c.3732C>A	p.Cys1244Ter	p.C1244*	ENST00000334344	NM_152641.2	1244	tgC/tgA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424777	49424777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	295	777	1	ENST00000301067.7:c.13570C>T	p.Arg4524Trp	p.R4524W	ENST00000301067	NM_003482.3	4524	Cgg/Tgg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761290	59761290	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1401	303	614	0	ENST00000259008.2:c.3117G>C	p.Glu1039Asp	p.E1039D	ENST00000259008	NM_032043.2	1039	gaG/gaC																																																																															
ERF	2077	MSKCC	GRCh37	19	42754068	42754068	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	239	648	0	ENST00000222329.4:c.284A>G	p.His95Arg	p.H95R	ENST00000222329	NM_006494.2	95	cAc/cGc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25973168	25973168	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	100	449	0	ENST00000435504.4:c.1257del	p.Ile420SerfsTer3	p.I420Sfs*3	ENST00000435504		419	ctT/ct																																																																															
EP300	2033	MSKCC	GRCh37	22	41574198	41574198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	169	614	1	ENST00000263253.7:c.6483G>A	p.Met2161Ile	p.M2161I	ENST00000263253	NM_001429.3	2161	atG/atA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0052345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	520	554	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0052345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	166	608	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0052345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	306	299	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																																
NF1	4763	MSKCC	GRCh37	17	29533256	29533256	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0052346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	14	526	0	ENST00000358273.4:c.1261-2A>T		p.X421_splice	ENST00000358273	NM_001042492.2	421																																																																																
SDHC	6391	MSKCC	GRCh37	1	161326622	161326622	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs3809873		P-0052346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	16	1017	0	ENST00000367975.2:c.397C>T	p.Arg133Ter	p.R133*	ENST00000367975	NM_003001.3	133	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0052354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	492	574	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0052354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	292	903	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306676	41306676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	164	819	0	ENST00000373198.4:c.983G>A	p.Arg328His	p.R328H	ENST00000373198	NM_133170.3	328	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578421	7578421	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	295	993	0	ENST00000269305.4:c.509delC	p.Thr170ArgfsTer4	p.T170Rfs*4	ENST00000269305	NM_001126112.2	170	aCg/ag																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873128	136873128	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	161	540	0	ENST00000241393.3:c.370del	p.Val124SerfsTer44	p.V124Sfs*44	ENST00000241393	NM_003467.2	124	Gtc/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0052356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	29	495	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441787	49441787	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	22	649	0	ENST00000301067.7:c.4197G>C	p.Gln1399His	p.Q1399H	ENST00000301067	NM_003482.3	1399	caG/caC																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805732	46805732	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	12	832	0	ENST00000290295.7:c.224C>A	p.Pro75Gln	p.P75Q	ENST00000290295	NM_006361.5	75	cCa/cAa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0052357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	159	720	0	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101392	27101399	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCCCTG	TGCCCCTG	-			P-0052357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	180	627	0	ENST00000324856.7:c.4680_4687del	p.Val1561HisfsTer8	p.V1561Hfs*8	ENST00000324856	NM_006015.4	1558	tcTGCCCCTGtg/tctg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085758	16085758	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	93	671	0	ENST00000281043.3:c.934A>G	p.Arg312Gly	p.R312G	ENST00000281043	NM_005378.4	312	Agg/Ggg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720732	89720732	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	33	220	0	ENST00000371953.3:c.883C>G	p.Leu295Val	p.L295V	ENST00000371953	NM_000314.4	295	Cta/Gta																																																																															
TP53	7157	MSKCC	GRCh37	17	7574010	7574013	+	frameshift_variant	Frame_Shift_Del	DEL	CTCG	CTCG	-			P-0052361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	170	764	0	ENST00000269305.4:c.1014_1017del	p.Phe338LeufsTer6	p.F338Lfs*6	ENST00000269305	NM_001126112.2	338	ttCGAG/tt																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62322267	62322267	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1614	88	969	2	ENST00000508582.2:c.2595C>G	p.Ser865Arg	p.S865R	ENST00000508582		865	agC/agG																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367293	50367293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	206	552	0	ENST00000331340.3:c.100C>T	p.Pro34Ser	p.P34S	ENST00000331340	NM_006060.4	34	Ccc/Tcc																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2491397	2491397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	175	985	0	ENST00000355716.4:c.440G>A	p.Gly147Asp	p.G147D	ENST00000355716	NM_003820.2	147	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0052382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	192	437	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0052382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	198	437	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88669547	88669547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56394626		P-0052382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	217	466	0	ENST00000360948.2:c.1351G>A	p.Val451Ile	p.V451I	ENST00000360948	NM_001012338.2	451	Gtc/Atc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46531833	46531833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	33	298	0	ENST00000262741.5:c.514G>A	p.Asp172Asn	p.D172N	ENST00000262741	NM_003629.3	172	Gat/Aat																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111521	8111521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	354	524	0	ENST00000346208.3:c.1007C>A	p.Pro336His	p.P336H	ENST00000346208		336	cCt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0052408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	400	416	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447070	49447070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	135	515	0	ENST00000301067.7:c.874G>A	p.Glu292Lys	p.E292K	ENST00000301067	NM_003482.3	292	Gag/Aag																																																																															
MSI1	4440	MSKCC	GRCh37	12	120806065	120806065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	114	527	0	ENST00000257552.2:c.112G>A	p.Glu38Lys	p.E38K	ENST00000257552	NM_002442.3	38	Gaa/Aaa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562773	21562773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	64	493	0	ENST00000382592.4:c.1146G>T	p.Gln382His	p.Q382H	ENST00000382592	NM_014572.2	382	caG/caT																																																																															
FLT3	2322	MSKCC	GRCh37	13	28601358	28601358	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0052408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	40	325	0	ENST00000241453.7:c.2074G>T	p.Glu692Ter	p.E692*	ENST00000241453	NM_004119.2	692	Gaa/Taa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2103376	2103376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1210	181	714	0	ENST00000219476.3:c.259G>A	p.Asp87Asn	p.D87N	ENST00000219476	NM_000548.3	87	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0052408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	446	733	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37865642	37865642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	85	615	0	ENST00000269571.5:c.511G>A	p.Asp171Asn	p.D171N	ENST00000269571		171	Gac/Aac																																																																															
BRCA1	672	MSKCC	GRCh37	17	41223019	41223019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	167	607	0	ENST00000357654.3:c.4912G>A	p.Glu1638Lys	p.E1638K	ENST00000357654	NM_007294.3	1638	Gaa/Aaa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218395	36218395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	204	786	0	ENST00000222270.7:c.4174C>T	p.Pro1392Ser	p.P1392S	ENST00000222270	NM_014727.1	1392	Ccg/Tcg																																																																															
ALK	238	MSKCC	GRCh37	2	29416513	29416513	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	393	652	0	ENST00000389048.3:c.4440C>A	p.Phe1480Leu	p.F1480L	ENST00000389048	NM_004304.4	1480	ttC/ttA																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872941	136872941	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	91	383	0	ENST00000241393.3:c.557G>T	p.Cys186Phe	p.C186F	ENST00000241393	NM_003467.2	186	tGt/tTt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	199	267	0	ENST00000397062.3:c.101G>T	p.Arg34Leu	p.R34L	ENST00000397062	NM_006164.4	34	cGa/cTa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663008	227663008	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	73	581	0	ENST00000305123.5:c.447G>C	p.Leu149Phe	p.L149F	ENST00000305123	NM_005544.2	149	ttG/ttC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540494	187540494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	58	411	0	ENST00000441802.2:c.7246G>A	p.Asp2416Asn	p.D2416N	ENST00000441802	NM_005245.3	2416	Gat/Aat																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526240	31526240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1278	182	700	1	ENST00000344624.3:c.800C>T	p.Ser267Phe	p.S267F	ENST00000344624		267	tCt/tTt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180038338	180038338	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	174	587	0	ENST00000261937.6:c.3679G>T	p.Ala1227Ser	p.A1227S	ENST00000261937	NM_182925.4	1227	Gcc/Tcc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020549	69020549	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0052408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	117	415	0	ENST00000288368.4:c.2921A>T	p.Asn974Ile	p.N974I	ENST00000288368	NM_024870.2	974	aAc/aTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376681	8376681	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0052408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	237	522	1	ENST00000356435.5:c.4432G>T	p.Gly1478Ter	p.G1478*	ENST00000356435		1478	Gga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389324	8389324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	115	434	0	ENST00000356435.5:c.4294C>T	p.Leu1432Phe	p.L1432F	ENST00000356435		1432	Ctc/Ttc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389393	8389393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	64	313	0	ENST00000356435.5:c.4225G>A	p.Asp1409Asn	p.D1409N	ENST00000356435		1409	Gac/Aac																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20148708	20148708	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	62	124	0	ENST00000379607.5:c.355G>C	p.Asp119His	p.D119H	ENST00000379607	NM_001412.3	119	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7576857	7576857	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0052412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	46	516	0	ENST00000269305.4:c.989T>A	p.Leu330His	p.L330H	ENST00000269305	NM_001126112.2	330	cTt/cAt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517818	176517818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	35	563	0	ENST00000292408.4:c.428C>A	p.Pro143His	p.P143H	ENST00000292408	NM_213647.1	143	cCc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0052415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	130	851	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306959	65306959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	73	519	1	ENST00000342505.4:c.2618G>A	p.Arg873His	p.R873H	ENST00000342505	NM_002227.2	873	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685287	89685287	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	37	91	0	ENST00000371953.3:c.182A>G	p.His61Arg	p.H61R	ENST00000371953	NM_000314.4	61	cAt/cGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060911	38060911	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0052415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	73	654	0	ENST00000250448.2:c.1078del	p.Ile360Ter	p.I360*	ENST00000250448	NM_004496.3	360	Ata/ta																																																																															
CUL3	8452	MSKCC	GRCh37	2	225342943	225342943	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	113	494	0	ENST00000264414.4:c.2149A>G	p.Met717Val	p.M717V	ENST00000264414	NM_003590.4	717	Atg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0052416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	151	456	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0052416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	232	686	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519930		P-0052416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	130	503	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479810	67479810	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863223746		P-0052416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	179	653	0	ENST00000327367.4:c.1117C>T	p.Arg373Cys	p.R373C	ENST00000327367	NM_005902.3	373	Cgc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199451	16199451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	174	474	0	ENST00000375759.3:c.224G>A	p.Arg75His	p.R75H	ENST00000375759	NM_015001.2	75	cGc/cAc																																																																															
RET	5979	MSKCC	GRCh37	10	43595967	43595967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	257	827	0	ENST00000355710.3:c.134C>T	p.Ala45Val	p.A45V	ENST00000355710	NM_020975.4	45	gCa/gTa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266130	41266647	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	GCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTT	GCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTT	-			P-0052416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	174	403	0	ENST00000349496.5:c.129_446del		p.X43_splice	ENST00000349496	NM_001904.3	43	GCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTT/-																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983022	149983022	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	130	585	0	ENST00000253339.5:c.3236C>A	p.Thr1079Asn	p.T1079N	ENST00000253339		1079	aCc/aAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0052423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	277	549	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602446	10602446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	249	790	0	ENST00000171111.5:c.1132G>T	p.Gly378Cys	p.G378C	ENST00000171111	NM_203500.1	378	Ggc/Tgc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62326461	62326461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	260	942	0	ENST00000508582.2:c.3458C>T	p.Ser1153Leu	p.S1153L	ENST00000508582		1153	tCa/tTa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9776522	9776522	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	211	728	0	ENST00000377346.4:c.625A>G	p.Thr209Ala	p.T209A	ENST00000377346	NM_005026.3	209	Acc/Gcc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843688	156843688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	425	782	0	ENST00000524377.1:c.1114G>T	p.Ala372Ser	p.A372S	ENST00000524377	NM_002529.3	372	Gcc/Tcc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852083	63852083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	157	614	0	ENST00000279873.7:c.2861C>T	p.Ala954Val	p.A954V	ENST00000279873	NM_032199.2	954	gCc/gTc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40441882	40441882	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0052423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	180	699	0	ENST00000345506.4:c.129-2A>G		p.X43_splice	ENST00000345506	NM_003152.3	43																																																																																
BCL6	604	MSKCC	GRCh37	3	187446848	187446848	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	165	576	0	ENST00000232014.4:c.1345A>G	p.Ile449Val	p.I449V	ENST00000232014	NM_001130845.1	449	Atc/Gtc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041261	47041261	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	195	777	0	ENST00000329236.7:c.1455del	p.Gln485HisfsTer141	p.Q485Hfs*141	ENST00000329236	NM_001204466.1	485	caG/ca																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152860124	152860124	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	179	568	0	ENST00000406277.2:c.304A>T	p.Ser102Cys	p.S102C	ENST00000406277	NM_152274.4	102	Agc/Tgc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965749	93965752	+	missense_variant	Missense_Mutation	ONP	CATG	CATG	TAAT			P-0052423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	53	292	0	ENST00000369303.4:c.2176_2179delinsATTA	p.His726_Asp727delinsIleAsn	p.H726_D727delinsIN	ENST00000369303	NM_004440.3	726	CATGat/ATTAat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0052424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	197	532	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175324	112175324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0052424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	230	344	0	ENST00000257430.4:c.4033G>T	p.Glu1345Ter	p.E1345*	ENST00000257430	NM_000038.5	1345	Gaa/Taa																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008017	29008017	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	253	465	2	ENST00000282397.4:c.752A>G	p.Asn251Ser	p.N251S	ENST00000282397	NM_002019.4	251	aAt/aGt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844722	156844722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	281	784	2	ENST00000524377.1:c.1276G>A	p.Val426Ile	p.V426I	ENST00000524377	NM_002529.3	426	Gtc/Atc																																																																															
ATM	472	MSKCC	GRCh37	11	108204669	108204669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	94	287	0	ENST00000278616.4:c.7984G>T	p.Val2662Phe	p.V2662F	ENST00000278616	NM_000051.3	2662	Gtt/Ttt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23637623	23637657	+	frameshift_variant	Frame_Shift_Del	DEL	TACATCTTCGCAAGCAGTTATGATACATGGCTCTT	TACATCTTCGCAAGCAGTTATGATACATGGCTCTT	-			P-0052424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	196	669	0	ENST00000261584.4:c.2648_2682del	p.Lys883SerfsTer33	p.K883Sfs*33	ENST00000261584	NM_024675.3	883	aAAGAGCCATGTATCATAACTGCTTGCGAAGATGTA/a																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276215	15276215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	238	697	2	ENST00000263388.2:c.5779G>A	p.Ala1927Thr	p.A1927T	ENST00000263388	NM_000435.2	1927	Gcc/Acc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361136	66361136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	149	431	0	ENST00000273854.3:c.1036G>A	p.Glu346Lys	p.E346K	ENST00000273854	NM_004439.5	346	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	305	687	0	ENST00000269305.4:c.1010G>C	p.Arg337Pro	p.R337P	ENST00000269305	NM_001126112.2	337	cGc/cCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249011	55249012	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAACCCAGG			P-0052425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	259	665	0	ENST00000275493.2:c.2315_2316insAGGCAACCC	p.Pro772_His773insGlyAsnPro	p.P772_H773insGNP	ENST00000275493	NM_005228.3	770	gac/gaCAACCCAGGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577025	7577025	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0052429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	184	729	0	ENST00000269305.4:c.913A>T	p.Lys305Ter	p.K305*	ENST00000269305	NM_001126112.2	305	Aag/Tag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43784254	43784254	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	59	659	1	ENST00000382044.4:c.232C>T	p.Arg78Ter	p.R78*	ENST00000382044	NM_001141980.1	78	Cga/Tga																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761262	59761262	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	138	655	0	ENST00000259008.2:c.3145T>G	p.Phe1049Val	p.F1049V	ENST00000259008	NM_032043.2	1049	Ttc/Gtc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602871	10602871	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	186	861	0	ENST00000171111.5:c.707A>G	p.Asp236Gly	p.D236G	ENST00000171111	NM_203500.1	236	gAc/gGc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11137022	11137022	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0052429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	164	648	0	ENST00000344626.4:c.3215G>T	p.Gly1072Val	p.G1072V	ENST00000344626	NM_003072.3	1072	gGg/gTg																																																																															
ALK	238	MSKCC	GRCh37	2	29498347	29498347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	34	575	0	ENST00000389048.3:c.1833G>A	p.Met611Ile	p.M611I	ENST00000389048	NM_004304.4	611	atG/atA																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417927	138417927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	37	398	0	ENST00000289153.2:c.1592G>A	p.Gly531Glu	p.G531E	ENST00000289153	NM_006219.2	531	gGa/gAa																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665023	138665023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	41	114	0	ENST00000330315.3:c.542C>T	p.Ala181Val	p.A181V	ENST00000330315	NM_023067.3	181	gCc/gTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540247	187540247	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	58	530	0	ENST00000441802.2:c.7493A>G	p.Glu2498Gly	p.E2498G	ENST00000441802	NM_005245.3	2498	gAa/gGa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541797	187541797	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	71	499	0	ENST00000441802.2:c.5943G>T	p.Gln1981His	p.Q1981H	ENST00000441802	NM_005245.3	1981	caG/caT																																																																															
IL7R	3575	MSKCC	GRCh37	5	35860962	35860962	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0052429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	102	419	2	ENST00000303115.3:c.91G>T	p.Glu31Ter	p.E31*	ENST00000303115	NM_002185.3	31	Gaa/Taa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117622263	117622263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	48	507	0	ENST00000368508.3:c.6607G>A	p.Asp2203Asn	p.D2203N	ENST00000368508	NM_002944.2	2203	Gac/Aac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874638	151874638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	48	526	0	ENST00000262189.6:c.7900G>A	p.Glu2634Lys	p.E2634K	ENST00000262189	NM_170606.2	2634	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970976	21970986	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCGACATCG	GTGCGACATCG	-			P-0052429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	111	679	0	ENST00000304494.5:c.372_382del	p.Asp125ValfsTer13	p.D125Vfs*13	ENST00000304494	NM_000077.4	124	cgCGATGTCGCACgg/cggg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578410	7578410	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	231	886	0	ENST00000269305.4:c.520A>T	p.Arg174Trp	p.R174W	ENST00000269305	NM_001126112.2	174	Agg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134266	11134266	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	268	699	1	ENST00000344626.4:c.2932C>T	p.Arg978Ter	p.R978*	ENST00000344626	NM_003072.3	978	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37873726	37873726	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0052430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	181	675	0	ENST00000269571.5:c.1891A>T	p.Thr631Ser	p.T631S	ENST00000269571		631	Acc/Tcc																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675162	40675162	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	122	811	0	ENST00000249776.8:c.126C>G	p.Asp42Glu	p.D42E	ENST00000249776	NM_033286.3	42	gaC/gaG																																																																															
CTCF	10664	MSKCC	GRCh37	16	67670673	67670673	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	89	586	0	ENST00000264010.4:c.1918C>A	p.Pro640Thr	p.P640T	ENST00000264010	NM_006565.3	640	Cct/Act																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170016829	170016829	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	84	495	0	ENST00000295797.4:c.1634G>T	p.Gly545Val	p.G545V	ENST00000295797	NM_002740.5	545	gGg/gTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76937822	76937822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	51	568	0	ENST00000373344.5:c.2926G>A	p.Glu976Lys	p.E976K	ENST00000373344	NM_000489.3	976	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0052445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	113	513	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0052445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	82	306	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0052445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	84	298	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100436	8100436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	87	881	0	ENST00000346208.3:c.410C>T	p.Ser137Leu	p.S137L	ENST00000346208		137	tCg/tTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274223	10274223	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	80	497	0	ENST00000330684.3:c.46C>G	p.Leu16Val	p.L16V	ENST00000330684	NM_001134407.1	16	Ctg/Gtg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964366	70964366	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	29	418	0	ENST00000276594.2:c.1662C>G	p.Ile554Met	p.I554M	ENST00000276594	NM_024504.3	554	atC/atG																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56174899	56174900	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	82	459	0	ENST00000399503.3:c.2059dup	p.Ile687AsnfsTer10	p.I687Nfs*10	ENST00000399503	NM_005921.1	686	-/A																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180536	56180537	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	39	390	0	ENST00000399503.3:c.3867dupA	p.Ala1290SerfsTer19	p.A1290Sfs*19	ENST00000399503	NM_005921.1	1289	gaa/gAaa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672333	86672346	+	frameshift_variant	Frame_Shift_Del	DEL	ACTCTATGGAAAAA	ACTCTATGGAAAAA	-			P-0052445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	62	428	0	ENST00000274376.6:c.2136_2149del	p.Ser713HisfsTer8	p.S713Hfs*8	ENST00000274376	NM_002890.2	712	tACTCTATGGAAAAA/t																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0052468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	99	485	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599949	10599950	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0052468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	105	595	0	ENST00000171111.5:c.1626_1627delGA	p.Glu542AspfsTer31	p.E542Dfs*31	ENST00000171111	NM_203500.1	542	gaGAcg/gacg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023441	31023441	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	201	601	0	ENST00000375687.4:c.2926C>T	p.Gln976Ter	p.Q976*	ENST00000375687	NM_015338.5	976	Caa/Taa																																																																															
BCL6	604	MSKCC	GRCh37	3	187447190	187447190	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	105	639	0	ENST00000232014.4:c.1003C>T	p.Gln335Ter	p.Q335*	ENST00000232014	NM_001130845.1	335	Cag/Tag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679724	88679724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	95	589	1	ENST00000360948.2:c.739G>T	p.Gly247Trp	p.G247W	ENST00000360948	NM_001012338.2	247	Ggg/Tgg																																																																															
STK11	6794	MSKCC	GRCh37	19	1218473	1218494	+	frameshift_variant	Frame_Shift_Del	DEL	GTTATACAACGAAGAGAAGCAG	GTTATACAACGAAGAGAAGCAG	-			P-0052468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	75	659	1	ENST00000326873.7:c.348_369del	p.Leu117LysfsTer5	p.L117Kfs*5	ENST00000326873	NM_000455.4	116	gtGTTATACAACGAAGAGAAGCAG/gt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68942807	68942807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	110	603	0	ENST00000288368.4:c.619G>T	p.Val207Phe	p.V207F	ENST00000288368	NM_024870.2	207	Gtc/Ttc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87317136	87317136	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	104	508	0	ENST00000277120.3:c.275G>T	p.Gly92Val	p.G92V	ENST00000277120		92	gGa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	810	464	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	212	700	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1023835002		P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	91	483	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																															
BRAF	673	MSKCC	GRCh37	7	140508697	140508697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	129	467	0	ENST00000288602.6:c.603G>T	p.Gln201His	p.Q201H	ENST00000288602	NM_004333.4	201	caG/caT																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229510	5229510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	38	142	1	ENST00000357368.4:c.2341G>A	p.Asp781Asn	p.D781N	ENST00000357368	NM_002850.3	781	Gat/Aat																																																																															
RECQL	5965	MSKCC	GRCh37	12	21628612	21628612	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	85	524	0	ENST00000421138.2:c.1096C>T	p.Gln366Ter	p.Q366*	ENST00000421138		366	Cag/Tag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865301	57865301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	223	676	2	ENST00000228682.2:c.2778G>T	p.Gln926His	p.Q926H	ENST00000228682	NM_005269.2	926	caG/caT																																																																															
JAK2	3717	MSKCC	GRCh37	9	5089744	5089745	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	33	270	0	ENST00000381652.3:c.2648dup	p.Leu884AlafsTer4	p.L884Afs*4	ENST00000381652	NM_004972.3	881	gta/gtAa																																																																															
STK40	83931	MSKCC	GRCh37	1	36826915	36826915	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	98	652	0	ENST00000373129.3:c.19G>C	p.Asp7His	p.D7H	ENST00000373129	NM_032017.1	7	Gac/Cac																																																																															
PARP1	142	MSKCC	GRCh37	1	226551651	226551652	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	196	498	0	ENST00000366794.5:c.2778dup	p.Gly927TrpfsTer5	p.G927Wfs*5	ENST00000366794	NM_001618.3	926	-/T																																																																															
POLE	5426	MSKCC	GRCh37	12	133226466	133226466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	164	404	0	ENST00000320574.5:c.3592G>T	p.Ala1198Ser	p.A1198S	ENST00000320574	NM_006231.2	1198	Gcc/Tcc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28609782	28609782	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	110	557	0	ENST00000241453.7:c.1447T>G	p.Trp483Gly	p.W483G	ENST00000241453	NM_004119.2	483	Tgg/Ggg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724706	43724706	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	73	667	0	ENST00000382044.4:c.3361C>G	p.Gln1121Glu	p.Q1121E	ENST00000382044	NM_001141980.1	1121	Caa/Gaa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11114074	11114074	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	133	466	0	ENST00000344626.4:c.2001+1G>T		p.X667_splice	ENST00000344626	NM_003072.3	667																																																																																
PPP2R1A	5518	MSKCC	GRCh37	19	52716024	52716024	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	136	693	0	ENST00000322088.6:c.589G>T	p.Glu197Ter	p.E197*	ENST00000322088	NM_014225.5	197	Gag/Tag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25964968	25964968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	58	577	0	ENST00000435504.4:c.4238G>T	p.Cys1413Phe	p.C1413F	ENST00000435504		1413	tGt/tTt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25973208	25973208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	66	459	0	ENST00000435504.4:c.1217C>T	p.Ala406Val	p.A406V	ENST00000435504		406	gCt/gTt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306614	41306614	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	448	585	0	ENST00000373198.4:c.1045C>A	p.His349Asn	p.H349N	ENST00000373198	NM_133170.3	349	Cat/Aat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47079182	47079182	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	527	587	0	ENST00000409792.3:c.7324C>G	p.Pro2442Ala	p.P2442A	ENST00000409792	NM_014159.6	2442	Cca/Gca																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750537	41750537	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	278	573	0	ENST00000226382.2:c.91G>T	p.Ala31Ser	p.A31S	ENST00000226382	NM_003924.3	31	Gct/Tct																																																																															
KDR	3791	MSKCC	GRCh37	4	55948761	55948761	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	150	563	0	ENST00000263923.4:c.3704G>C	p.Ser1235Thr	p.S1235T	ENST00000263923	NM_002253.2	1235	aGt/aCt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518810	176518810	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	139	597	0	ENST00000292408.4:c.727+1G>T		p.X243_splice	ENST00000292408	NM_213647.1	243																																																																																
FLT4	2324	MSKCC	GRCh37	5	180058683	180058683	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	194	667	0	ENST00000261937.6:c.154A>T	p.Arg52Trp	p.R52W	ENST00000261937	NM_182925.4	52	Agg/Tgg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31322917	31322917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	113	752	0	ENST00000412585.2:c.979G>T	p.Val327Phe	p.V327F	ENST00000412585	NM_005514.6	327	Gtc/Ttc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162394400	162394400	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	283	430	0	ENST00000366898.1:c.668C>A	p.Ser223Ter	p.S223*	ENST00000366898	NM_004562.2	223	tCa/tAa																																																																															
HGF	3082	MSKCC	GRCh37	7	81334994	81334994	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	123	484	0	ENST00000222390.5:c.1833T>A	p.Ser611Arg	p.S611R	ENST00000222390	NM_000601.4	611	agT/agA																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523501	106523501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	106	328	0	ENST00000359195.3:c.2653G>T	p.Ala885Ser	p.A885S	ENST00000359195	NM_002649.2	885	Gcc/Tcc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453137	140453137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	152	467	0	ENST00000288602.6:c.1798G>T	p.Val600Leu	p.V600L	ENST00000288602	NM_004333.4	600	Gtg/Ttg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949639	151949639	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	91	411	0	ENST00000262189.6:c.1461G>T	p.Met487Ile	p.M487I	ENST00000262189	NM_170606.2	487	atG/atT																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069210	5069210	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	30	392	0	ENST00000381652.3:c.1513+2T>A		p.X505_splice	ENST00000381652	NM_004972.3	505																																																																																
BCOR	54880	MSKCC	GRCh37	X	39932961	39932966	+	inframe_deletion	In_Frame_Del	DEL	GCGCGG	GCGCGG	-			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	92	658	0	ENST00000378444.4:c.1633_1638del	p.Pro545_Arg546del	p.P545_R546del	ENST00000378444	NM_001123385.1	545	CCGCGC/-																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411234	63411235	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	123	668	0	ENST00000330258.3:c.1932_1933delinsTT	p.Gln644_Ala645delinsHisSer	p.Q644_A645delinsHS	ENST00000330258	NM_152424.3	644	caGGcc/caTTcc																																																																															
AR	367	MSKCC	GRCh37	X	66937372	66937372	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	138	669	1	ENST00000374690.3:c.2226G>A	p.Trp742Ter	p.W742*	ENST00000374690	NM_000044.3	742	tgG/tgA																																																																															
MED12	9968	MSKCC	GRCh37	X	70344880	70344880	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	165	658	0	ENST00000374080.3:c.2110C>A	p.Pro704Thr	p.P704T	ENST00000374080		704	Cca/Aca																																																																															
ATRX	546	MSKCC	GRCh37	X	76778822	76778822	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	100	579	0	ENST00000373344.5:c.6757G>C	p.Glu2253Gln	p.E2253Q	ENST00000373344	NM_000489.3	2253	Gaa/Caa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0052484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	153	509	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	455	611	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0052484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	43	453	2	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
CDK8	1024	MSKCC	GRCh37	13	26828827	26828827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	153	372	0	ENST00000381527.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000381527	NM_001260.1	17	Gag/Aag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212587165	212587165	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	35	548	0	ENST00000342788.4:c.836T>G	p.Phe279Cys	p.F279C	ENST00000342788	NM_005235.2	279	tTc/tGc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68934362	68934362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	63	514	1	ENST00000288368.4:c.428G>A	p.Arg143Gln	p.R143Q	ENST00000288368	NM_024870.2	143	cGg/cAg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464358	120464358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	69	647	0	ENST00000256646.2:c.5288G>A	p.Gly1763Glu	p.G1763E	ENST00000256646	NM_024408.3	1763	gGg/gAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117690	70117691	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0052484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	93	613	0	ENST00000245479.2:c.162dup	p.Lys55GlnfsTer197	p.K55Qfs*197	ENST00000245479	NM_000346.3	53	ttc/ttCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0052485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	80	458	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0052485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	19	208	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39285837	39285837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	39	450	0	ENST00000402219.2:c.322G>A	p.Glu108Lys	p.E108K	ENST00000402219	NM_005633.3	108	Gaa/Aaa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0052485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	57	271	1				ENST00000310581	NM_198253.2																																																																																	
NF1	4763	MSKCC	GRCh37	17	29664562	29664562	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0052485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	95	484	0	ENST00000358273.4:c.6604T>G	p.Leu2202Val	p.L2202V	ENST00000358273	NM_001042492.2	2202	Ttg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0052487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	255	558	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458698	120458698	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	245	484	0	ENST00000256646.2:c.6647C>G	p.Thr2216Ser	p.T2216S	ENST00000256646	NM_024408.3	2216	aCt/aGt																																																																															
KIT	3815	MSKCC	GRCh37	4	55593681	55593681	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	66	521	0	ENST00000288135.5:c.1747G>C	p.Glu583Gln	p.E583Q	ENST00000288135	NM_000222.2	583	Gag/Cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0052488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	88	578	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
CBFB	865	MSKCC	GRCh37	16	67100696	67100696	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	62	573	0	ENST00000412916.2:c.394G>T	p.Ala132Ser	p.A132S	ENST00000412916		132	Gcc/Tcc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781381	3781381	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	67	651	1	ENST00000262367.5:c.4984G>T	p.Asp1662Tyr	p.D1662Y	ENST00000262367	NM_004380.2	1662	Gat/Tat																																																																															
KDR	3791	MSKCC	GRCh37	4	55948770	55948770	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	50	468	0	ENST00000263923.4:c.3695G>T	p.Arg1232Leu	p.R1232L	ENST00000263923	NM_002253.2	1232	cGg/cTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044941	47044941	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	27	632	0	ENST00000329236.7:c.2034del	p.Trp678CysfsTer46	p.W678Cfs*46	ENST00000329236	NM_001204466.1	678	tGg/tg																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0052489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	321	432	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508499	106508499	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752602335		P-0052489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	93	365	0	ENST00000359195.3:c.493G>A	p.Val165Ile	p.V165I	ENST00000359195	NM_002649.2	165	Gtc/Atc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371734	55371734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	128	423	1	ENST00000297316.4:c.424C>T	p.Arg142Cys	p.R142C	ENST00000297316	NM_022454.3	142	Cgc/Tgc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562663	95562663	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0052489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	181	461	0	ENST00000343455.3:c.4594G>T	p.Glu1532Ter	p.E1532*	ENST00000343455	NM_177438.2	1532	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579364	7579365	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGTAG			P-0052489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	412	774	1	ENST00000269305.4:c.318_322dup	p.Gly108AlafsTer17	p.G108Afs*17	ENST00000269305	NM_001126112.2	108	ggt/gCTACGgt																																																																															
ATR	545	MSKCC	GRCh37	3	142253923	142253923	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0052489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	129	165	0	ENST00000350721.4:c.3944A>T	p.Gln1315Leu	p.Q1315L	ENST00000350721	NM_001184.3	1315	cAg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	139	487	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060883	38060883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	129	437	0	ENST00000250448.2:c.1106C>T	p.Ser369Phe	p.S369F	ENST00000250448	NM_004496.3	369	tCt/tTt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0052494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	651	602	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65305454	65305454	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	39	525	0	ENST00000342505.4:c.2674del	p.Cys892AlafsTer19	p.C892Afs*19	ENST00000342505	NM_002227.2	892	Tgc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0052500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	512	838	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0052500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	481	632	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
WT1	7490	MSKCC	GRCh37	11	32456585	32456585	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	13	90	0	ENST00000332351.3:c.307G>T	p.Ala103Ser	p.A103S	ENST00000332351	NM_024426.4	103	Gcg/Tcg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902560	1902560	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	81	739	0	ENST00000382891.5:c.179G>T	p.Gly60Val	p.G60V	ENST00000382891	NM_133335.3	60	gGg/gTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39916421	39916421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	85	627	0	ENST00000378444.4:c.4582C>A	p.Gln1528Lys	p.Q1528K	ENST00000378444	NM_001123385.1	1528	Cag/Aag																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986517	36986517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	460	541	0	ENST00000354822.5:c.1172C>T	p.Ser391Phe	p.S391F	ENST00000354822	NM_001079668.2	391	tCc/tTc																																																																															
MAX	4149	MSKCC	GRCh37	14	65560534	65560534	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0052500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	224	434	0	ENST00000358664.4:c.64-1G>T		p.X22_splice	ENST00000358664	NM_002382.4	22																																																																																
IGF2	3481	MSKCC	GRCh37	11	2154784	2154784	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	173	797	1	ENST00000434045.2:c.437C>A	p.Ser146Tyr	p.S146Y	ENST00000434045	NM_001127598.1	146	tCc/tAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68847303	68847303	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	190	593	0	ENST00000261769.5:c.1225T>C	p.Trp409Arg	p.W409R	ENST00000261769	NM_004360.3	409	Tgg/Cgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5211625	5211625	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	212	619	0	ENST00000357368.4:c.5210A>T	p.Asn1737Ile	p.N1737I	ENST00000357368	NM_002850.3	1737	aAc/aTc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354155	15354155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	57	629	0	ENST00000263377.2:c.2725C>T	p.Pro909Ser	p.P909S	ENST00000263377	NM_058243.2	909	Ccc/Tcc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18958624	18958624	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	151	671	0	ENST00000262803.5:c.443G>T	p.Arg148Leu	p.R148L	ENST00000262803	NM_002911.3	148	cGt/cTt																																																																															
REL	5966	MSKCC	GRCh37	2	61149387	61149387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	331	534	0	ENST00000295025.8:c.1577C>T	p.Ser526Leu	p.S526L	ENST00000295025	NM_002908.2	526	tCa/tTa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095755	178095755	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0052500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	73	482	0	ENST00000397062.3:c.1576G>T	p.Glu526Ter	p.E526*	ENST00000397062	NM_006164.4	526	Gag/Tag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251586	212251586	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	117	535	0	ENST00000342788.4:c.3473C>A	p.Pro1158His	p.P1158H	ENST00000342788	NM_005235.2	1158	cCc/cAc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117708984	117708984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	184	566	0	ENST00000368508.3:c.1973G>T	p.Gly658Val	p.G658V	ENST00000368508	NM_002944.2	658	gGc/gTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877164	151877164	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	77	478	0	ENST00000262189.6:c.7197G>C	p.Lys2399Asn	p.K2399N	ENST00000262189	NM_170606.2	2399	aaG/aaC																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932234	39932234	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	95	832	1	ENST00000378444.4:c.2365C>A	p.Pro789Thr	p.P789T	ENST00000378444	NM_001123385.1	789	Ccc/Acc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045726	47045726	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	60	776	0	ENST00000329236.7:c.2373G>T	p.Met791Ile	p.M791I	ENST00000329236	NM_001204466.1	791	atG/atT																																																																															
MTOR	2475	MSKCC	GRCh37	1	11303220	11303220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024459-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			826	57	638	0	ENST00000361445.4:c.1363G>A	p.Val455Met	p.V455M	ENST00000361445	NM_004958.3	455	Gtg/Atg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982439	25982439	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024459-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			405	158	355	0	ENST00000435504.4:c.851del	p.Arg284GlnfsTer3	p.R284Qfs*3	ENST00000435504		284	cGa/ca																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459531	50459531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051400-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			305	54	275	0	ENST00000331340.3:c.820C>T	p.Arg274Cys	p.R274C	ENST00000331340	NM_006060.4	274	Cgt/Tgt																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217650	7217653	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0051400-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			240	60	425	0	ENST00000380728.2:c.274_277del	p.Lys92PhefsTer16	p.K92Ffs*16	ENST00000380728		92	AAAGtt/tt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	75	567	1	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249020	55249022	+	missense_variant	Missense_Mutation	ONP	ACG	ACG	TCA			P-0051815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	95	529	0	ENST00000275493.2:c.2318_2320delinsTCA	p.His773_Val774delinsLeuMet	p.H773_V774delinsLM	ENST00000275493	NM_005228.3	773	cACGtg/cTCAtg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342833	118342833	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	53	294	0	ENST00000534358.1:c.959T>A	p.Ile320Asn	p.I320N	ENST00000534358	NM_005933.3	320	aTt/aAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934843	9934843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	41	441	0	ENST00000330684.3:c.1447G>A	p.Gly483Arg	p.G483R	ENST00000330684	NM_001134407.1	483	Ggg/Agg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257860	19257860	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0051815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	50	712	0	ENST00000162023.5:c.526A>T	p.Lys176Ter	p.K176*	ENST00000162023		176	Aaa/Taa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966787	25966787	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	22	588	0	ENST00000435504.4:c.2419A>G	p.Asn807Asp	p.N807D	ENST00000435504		807	Aac/Gac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0051884-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			94	203	476	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051884-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	153	803	5	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051884-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			79	359	1065	4	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
BTK	695	MSKCC	GRCh37	X	100625009	100625009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051884-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			228	99	769	3	ENST00000308731.7:c.368G>A	p.Arg123Gln	p.R123Q	ENST00000308731	NM_000061.2	123	cGg/cAg																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40681804	40681804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051884-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			129	54	351	1	ENST00000249776.8:c.583G>A	p.Glu195Lys	p.E195K	ENST00000249776	NM_033286.3	195	Gaa/Aaa																																																																															
CBFB	865	MSKCC	GRCh37	16	67116114	67116114	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0051884-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			60	141	444	2	ENST00000412916.2:c.400-2A>T		p.X134_splice	ENST00000412916		134																																																																																
AMER1	139285	MSKCC	GRCh37	X	63410451	63410451	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051884-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			200	19	962	4	ENST00000330258.3:c.2716C>G	p.Leu906Val	p.L906V	ENST00000330258	NM_152424.3	906	Ctc/Gtc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871103	12871146	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGAGCCGCCCGGCGGCGCCTTTAATTGGGGCTCCGGCTAACT	CGGGAGCCGCCCGGCGGCGCCTTTAATTGGGGCTCCGGCTAACT	-			P-0051884-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			219	286	484	2	ENST00000228872.4:c.331_374del	p.Gly111Ter	p.G111*	ENST00000228872	NM_004064.3	110	agCGGGAGCCGCCCGGCGGCGCCTTTAATTGGGGCTCCGGCTAACTct/agct																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974748	21974748	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0052013-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	55	363	0	ENST00000304494.5:c.79G>T	p.Glu27Ter	p.E27*	ENST00000304494	NM_000077.4	27	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577548	+	missense_variant	Missense_Mutation	ONP	TGCC	TGCC	GGCA	rs483352695		P-0052013-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			698	66	647	0	ENST00000269305.4:c.733_736inv	p.Gly245_Met246delinsCysLeu	p.G245_M246delinsCL	ENST00000269305	NM_001126112.2	245	GGCAtg/TGCCtg																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944877	31944877	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052013-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	64	395	0	ENST00000340398.3:c.224C>G	p.Ala75Gly	p.A75G	ENST00000340398	NM_001013699.2	75	gCg/gGg																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872823	136872824	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0052013-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			513	34	415	0	ENST00000241393.3:c.674dup	p.Leu226AlafsTer50	p.L226Afs*50	ENST00000241393	NM_003467.2	225	aag/aaAg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57466852	57466852	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052013-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			409	52	343	0	ENST00000371085.3:c.71A>C	p.Lys24Thr	p.K24T	ENST00000371085	NM_000516.4	24	aAa/aCa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670822	134670822	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0052013-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			553	31	544	0	ENST00000398015.3:c.733G>T	p.Glu245Ter	p.E245*	ENST00000398015	NM_004441.4	245	Gaa/Taa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557917	187557917	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0052013-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			574	48	454	0	ENST00000441802.2:c.3794del	p.Asn1265MetfsTer11	p.N1265Mfs*11	ENST00000441802	NM_005245.3	1265	aAt/at																																																																															
FLT4	2324	MSKCC	GRCh37	5	180051051	180051053	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0052013-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			595	45	605	0	ENST00000261937.6:c.1430_1432del	p.Arg477del	p.R477del	ENST00000261937	NM_182925.4	477	cGGCag/cag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0052172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	71	645	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CBFB	865	MSKCC	GRCh37	16	67070572	67070572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	29	313	0	ENST00000412916.2:c.196C>T	p.Leu66Phe	p.L66F	ENST00000412916		66	Ctc/Ttc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48028103	48028103	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	36	443	0	ENST00000234420.5:c.2981A>C	p.Tyr994Ser	p.Y994S	ENST00000234420	NM_000179.2	994	tAc/tCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0052200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	134	478	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0052200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	133	518	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0052200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	154	681	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845697	151845697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	202	702	0	ENST00000262189.6:c.13315G>T	p.Val4439Phe	p.V4439F	ENST00000262189	NM_170606.2	4439	Gtc/Ttc																																																																															
APC	324	MSKCC	GRCh37	5	112111412	112111412	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	36	335	0	ENST00000257430.4:c.509A>G	p.Asp170Gly	p.D170G	ENST00000257430	NM_000038.5	170	gAt/gGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974782	21974783	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CAGT			P-0052225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	64	296	0	ENST00000304494.5:c.41_44dup	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tgg/tgACTGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578502	7578502	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	166	1142	0	ENST00000269305.4:c.428T>C	p.Val143Ala	p.V143A	ENST00000269305	NM_001126112.2	143	gTg/gCg																																																																															
MSI1	4440	MSKCC	GRCh37	12	120784045	120784045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	258	1235	3	ENST00000257552.2:c.940G>A	p.Gly314Ser	p.G314S	ENST00000257552	NM_002442.3	314	Ggc/Agc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748117	72748117	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	131	643	0	ENST00000357731.5:c.61C>G	p.Leu21Val	p.L21V	ENST00000357731	NM_173808.2	21	Ctc/Gtc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421807	49421807	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	140	1051	1	ENST00000301067.7:c.14500del	p.Glu4834LysfsTer24	p.E4834Kfs*24	ENST00000301067	NM_003482.3	4834	Gaa/aa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101110	41101110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	105	841	0	ENST00000373198.4:c.1246C>A	p.Arg416Ser	p.R416S	ENST00000373198	NM_133170.3	416	Cgc/Agc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520407	176520409	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TTC	TTC	-			P-0052225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	244	1014	0	ENST00000292408.4:c.1253_1255del	p.Phe418del	p.F418del	ENST00000292408	NM_213647.1	418	TTC/-																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090563	5090564	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	71	441	0	ENST00000381652.3:c.2880dup	p.Cys961MetfsTer31	p.C961Mfs*31	ENST00000381652	NM_004972.3	960	ata/atAa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	127	926	1	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913535		P-0052226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	71	466	0	ENST00000256078.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000256078	NM_033360.2	13	Ggc/Cgc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123185184	123185184	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	54	490	0	ENST00000218089.9:c.1136C>A	p.Thr379Asn	p.T379N	ENST00000218089	NM_001042749.1	379	aCc/aAc																																																																															
APC	324	MSKCC	GRCh37	5	112178282	112178282	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	66	460	0	ENST00000257430.4:c.6991C>G	p.Pro2331Ala	p.P2331A	ENST00000257430	NM_000038.5	2331	Cct/Gct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	20	685	0	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591887	48591889	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0052227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	151	519	0	ENST00000342988.3:c.1052_1054del	p.Asp351del	p.D351del	ENST00000342988	NM_005359.5	350	gtTGAt/gtt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289345	33289345	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0052227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	122	388	0	ENST00000374542.5:c.208-1G>A		p.X70_splice	ENST00000374542	NM_001141970.1	70																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0052229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	33	542	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0052229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	25	648	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221999	1221999	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	79	995	2	ENST00000326873.7:c.914A>C	p.Gln305Pro	p.Q305P	ENST00000326873	NM_000455.4	305	cAg/cCg																																																																															
APC	324	MSKCC	GRCh37	5	112175373	112175373	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TT			P-0052229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	32	316	0	ENST00000257430.4:c.4082delinsTT	p.Pro1361LeufsTer14	p.P1361Lfs*14	ENST00000257430	NM_000038.5	1361	cCc/cTTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0052230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	79	505	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ATM	472	MSKCC	GRCh37	11	108203492	108203492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138941496		P-0052230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	82	297	0	ENST00000278616.4:c.7792C>T	p.Arg2598Ter	p.R2598*	ENST00000278616	NM_000051.3	2598	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492821	56492821	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0052230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	79	701	0	ENST00000407977.2:c.118del	p.Arg40AspfsTer11	p.R40Dfs*11	ENST00000407977		40	Aga/ga																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	55	443	2	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	74	752	3	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120480582	120480582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	143	679	2	ENST00000256646.2:c.3235G>A	p.Val1079Ile	p.V1079I	ENST00000256646	NM_024408.3	1079	Gtt/Att																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	78	478	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	200	1118	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	78	399	2	ENST00000303115.3:c.361delA	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789591	3789591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	45	632	0	ENST00000262367.5:c.4268delC	p.Pro1423LeufsTer36	p.P1423Lfs*36	ENST00000262367	NM_004380.2	1423	cCt/ct																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457303	67457303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	157	1143	2	ENST00000327367.4:c.277C>T	p.Arg93Ter	p.R93*	ENST00000327367	NM_005902.3	93	Cga/Tga																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	131	1083	4	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46211462	46211462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	136	308	0	ENST00000334344.6:c.428G>A	p.Arg143His	p.R143H	ENST00000334344	NM_152641.2	143	cGt/cAt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149456893	149456893	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3829986		P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	161	887	2	ENST00000286301.3:c.835G>A	p.Val279Met	p.V279M	ENST00000286301	NM_005211.3	279	Gtg/Atg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	334	1124	1	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	122	685	4	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	248	698	7	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
RB1	5925	MSKCC	GRCh37	13	48954320	48954321	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	245	348	0	ENST00000267163.4:c.1446dup	p.His483SerfsTer10	p.H483Sfs*10	ENST00000267163	NM_000321.2	481	att/aTtt																																																																															
B2M	567	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	120	357	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72831026	72831026	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs61737017		P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	94	677	0	ENST00000268489.5:c.5555A>C	p.Gln1852Pro	p.Q1852P	ENST00000268489	NM_006885.3	1852	cAg/cCg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979246	93979246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	37	460	0	ENST00000369303.4:c.1582C>T	p.Pro528Ser	p.P528S	ENST00000369303	NM_004440.3	528	Ccc/Tcc																																																																															
TET1	80312	MSKCC	GRCh37	10	70405658	70405658	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	127	653	0	ENST00000373644.4:c.3172T>A	p.Leu1058Met	p.L1058M	ENST00000373644	NM_030625.2	1058	Ttg/Atg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439906	56439906	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	169	814	0	ENST00000407977.2:c.686C>T	p.Pro229Leu	p.P229L	ENST00000407977		229	cCg/cTg																																																																															
ABL1	25	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	84	1063	3	ENST00000318560.5:c.2352delC	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643942	52643943	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	45	573	1	ENST00000394830.3:c.1953dup	p.Ser652IlefsTer13	p.S652Ifs*13	ENST00000394830	NM_018313.4	651	-/A																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15964748	15964748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	146	701	2	ENST00000268712.3:c.5848C>T	p.Arg1950Cys	p.R1950C	ENST00000268712	NM_006311.3	1950	Cgt/Tgt																																																																															
PARK2	5071	MSKCC	GRCh37	6	161781213	161781213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	147	800	0	ENST00000366898.1:c.1192G>A	p.Ala398Thr	p.A398T	ENST00000366898	NM_004562.2	398	Gcc/Acc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495016	56495016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	155	912	1	ENST00000267101.3:c.3373C>T	p.Arg1125Trp	p.R1125W	ENST00000267101	NM_001982.3	1125	Cgg/Tgg																																																																															
SUFU	51684	MSKCC	GRCh37	10	104263974	104263974	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	76	395	1	ENST00000369902.3:c.71delC	p.Pro24ArgfsTer72	p.P24Rfs*72	ENST00000369902	NM_016169.3	22	gCc/gc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004601	16004601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	116	629	1	ENST00000268712.3:c.2653G>A	p.Ala885Thr	p.A885T	ENST00000268712	NM_006311.3	885	Gct/Act																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	125	762	4	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	128	706	4	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1250	549	1512	1	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143114277	143114277	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs76891221		P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	70	481	0	ENST00000262992.4:c.1144C>T	p.Arg382Trp	p.R382W	ENST00000262992	NM_001101669.1	382	Cgg/Tgg																																																																															
TEK	7010	MSKCC	GRCh37	9	27212851	27212851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	208	996	1	ENST00000380036.4:c.2833G>A	p.Ala945Thr	p.A945T	ENST00000380036	NM_000459.3	945	Gct/Act																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1308	442	1303	8	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78897444	78897444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	202	1284	0	ENST00000306801.3:c.2779C>T	p.Arg927Trp	p.R927W	ENST00000306801	NM_020761.2	927	Cgg/Tgg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409805	139409805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1141	287	1350	1	ENST00000277541.6:c.1951G>A	p.Asp651Asn	p.D651N	ENST00000277541	NM_017617.3	651	Gac/Aac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214728	36214728	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	361	1038	4	ENST00000222270.7:c.3159del	p.Arg1055GlyfsTer127	p.R1055Gfs*127	ENST00000222270	NM_014727.1	1052	Ggg/gg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870471	40870471	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	114	639	0	ENST00000428826.2:c.931+1G>A		p.X311_splice	ENST00000428826		311																																																																																
MSH2	4436	MSKCC	GRCh37	2	47657008	47657008	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	108	450	1	ENST00000233146.2:c.1204C>T	p.Gln402Ter	p.Q402*	ENST00000233146	NM_000251.2	402	Caa/Taa																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139804438	139804438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	184	925	0	ENST00000247668.2:c.595C>T	p.Arg199Trp	p.R199W	ENST00000247668	NM_021138.3	199	Cgg/Tgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534307	187534307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	120	773	0	ENST00000441802.2:c.9419C>T	p.Pro3140Leu	p.P3140L	ENST00000441802	NM_005245.3	3140	cCg/cTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391212	139391212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1366	261	1507	3	ENST00000277541.6:c.6979C>T	p.Arg2327Trp	p.R2327W	ENST00000277541	NM_017617.3	2327	Cgg/Tgg																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72881575	72881575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	104	543	1	ENST00000325599.8:c.544C>T	p.Arg182Ter	p.R182*	ENST00000325599	NM_018130.2	182	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088668	27088669	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	196	960	0	ENST00000324856.7:c.2281dupC	p.Gln761ProfsTer56	p.Q761Pfs*56	ENST00000324856	NM_006015.4	759	-/C																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440135	49440136	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	373	942	2	ENST00000301067.7:c.4490_4491del	p.His1497LeufsTer30	p.H1497Lfs*30	ENST00000301067	NM_003482.3	1497	cAC/c																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14317322	14317322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	118	619	0	ENST00000256196.4:c.188G>A	p.Arg63Gln	p.R63Q	ENST00000256196		63	cGg/cAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779440	3779440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1129	208	1294	1	ENST00000262367.5:c.5608G>A	p.Ala1870Thr	p.A1870T	ENST00000262367	NM_004380.2	1870	Gcc/Acc																																																																															
RET	5979	MSKCC	GRCh37	10	43622171	43622171	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	180	777	1	ENST00000355710.3:c.3187+1G>A		p.X1063_splice	ENST00000355710	NM_020975.4	1063																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71946469	71946469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	173	1021	0	ENST00000298229.2:c.2633G>A	p.Arg878His	p.R878H	ENST00000298229	NM_001567.3	878	cGc/cAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946468	71946468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	177	1023	1	ENST00000298229.2:c.2632C>T	p.Arg878Cys	p.R878C	ENST00000298229	NM_001567.3	878	Cgc/Tgc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44520604	44520604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	97	437	1	ENST00000291552.4:c.158G>A	p.Arg53His	p.R53H	ENST00000291552	NM_006758.2	53	cGt/cAt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67663346	67663346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	92	495	0	ENST00000264010.4:c.1747G>A	p.Val583Ile	p.V583I	ENST00000264010	NM_006565.3	583	Gta/Ata																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046461	30046461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	118	757	1	ENST00000331968.5:c.2722C>T	p.Arg908Cys	p.R908C	ENST00000331968	NM_002742.2	908	Cgt/Tgt																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607783	46607783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	194	1191	3	ENST00000263734.3:c.1972C>T	p.Arg658Cys	p.R658C	ENST00000263734	NM_001430.4	658	Cgc/Tgc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11288885	11288885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	149	826	3	ENST00000361445.4:c.2870G>A	p.Arg957Gln	p.R957Q	ENST00000361445	NM_004958.3	957	cGg/cAg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120469231	120469231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	105	579	0	ENST00000256646.2:c.3896G>A	p.Arg1299Gln	p.R1299Q	ENST00000256646	NM_024408.3	1299	cGg/cAg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193202163	193202163	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	81	423	0	ENST00000367435.3:c.1195C>T	p.Arg399Ter	p.R399*	ENST00000367435	NM_024529.4	399	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114905815	114905815	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	164	731	0	ENST00000543371.1:c.837del	p.Tyr280ThrfsTer5	p.Y280Tfs*5	ENST00000543371	NM_001198531.1	278	caC/ca																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374453	118374453	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	117	689	0	ENST00000534358.1:c.7849del	p.Arg2617GlyfsTer24	p.R2617Gfs*24	ENST00000534358	NM_005933.3	2616	Aaa/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416396	49416396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	137	686	3	ENST00000301067.7:c.16315C>T	p.Arg5439Trp	p.R5439W	ENST00000301067	NM_003482.3	5439	Cgg/Tgg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95598957	95598957	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	58	501	0	ENST00000343455.3:c.202T>G	p.Ser68Ala	p.S68A	ENST00000343455	NM_177438.2	68	Tca/Gca																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43766921	43766921	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	67	348	0	ENST00000382044.4:c.1130C>A	p.Ser377Tyr	p.S377Y	ENST00000382044	NM_001141980.1	377	tCt/tAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584713	48584713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	135	543	1	ENST00000342988.3:c.791G>A	p.Ser264Asn	p.S264N	ENST00000342988	NM_005359.5	264	aGc/aAc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18972831	18972831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	113	701	0	ENST00000262803.5:c.2470G>A	p.Ala824Thr	p.A824T	ENST00000262803	NM_002911.3	824	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229052	36229052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1297	175	1132	0	ENST00000222270.7:c.7832C>T	p.Ser2611Leu	p.S2611L	ENST00000222270	NM_014727.1	2611	tCg/tTg																																																																															
ALK	238	MSKCC	GRCh37	2	29754928	29754928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	140	825	1	ENST00000389048.3:c.1007C>T	p.Pro336Leu	p.P336L	ENST00000389048	NM_004304.4	336	cCg/cTg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130456	29130456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	125	968	0	ENST00000328354.6:c.254C>A	p.Pro85His	p.P85H	ENST00000328354	NM_007194.3	85	cCt/cAt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707732	176707732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	144	642	1	ENST00000439151.2:c.5789G>A	p.Arg1930His	p.R1930H	ENST00000439151	NM_022455.4	1930	cGc/cAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176720991	176720991	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	145	752	0	ENST00000439151.2:c.6622T>C	p.Cys2208Arg	p.C2208R	ENST00000439151	NM_022455.4	2208	Tgt/Cgt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287799	33287799	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	188	1110	1	ENST00000374542.5:c.1454A>C	p.Glu485Ala	p.E485A	ENST00000374542	NM_001141970.1	485	gAa/gCa																																																																															
CCND3	896	MSKCC	GRCh37	6	41905030	41905030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	155	723	0	ENST00000372991.4:c.517G>A	p.Asp173Asn	p.D173N	ENST00000372991	NM_001760.3	173	Gac/Aac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396541	139396541	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0052242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	84	992	1	ENST00000277541.6:c.5385-1G>T		p.X1795_splice	ENST00000277541	NM_017617.3	1795																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38061223	38061228	+	inframe_deletion	In_Frame_Del	DEL	TCTCGA	TCTCGA	-			P-0052243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	316	857	1	ENST00000250448.2:c.761_766del	p.Phe254_Asn256delinsTyr	p.F254_N256delinsY	ENST00000250448	NM_004496.3	254	tTCGAGAac/tac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777867	3777867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	434	1381	1	ENST00000262367.5:c.7181C>T	p.Ser2394Phe	p.S2394F	ENST00000262367	NM_004380.2	2394	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	307	753	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0052253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	198	240	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170046	32170046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	310	905	0	ENST00000375023.3:c.3562G>A	p.Asp1188Asn	p.D1188N	ENST00000375023	NM_004557.3	1188	Gat/Aat																																																																															
PREX2	80243	MSKCC	GRCh37	8	68984738	68984738	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	15	79	0	ENST00000288368.4:c.1502A>G	p.Asp501Gly	p.D501G	ENST00000288368	NM_024870.2	501	gAt/gGt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104696	69104696	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	267	596	0	ENST00000288368.4:c.4540T>A	p.Ser1514Thr	p.S1514T	ENST00000288368	NM_024870.2	1514	Tcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0052271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	66	389	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0052271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	75	446	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0052271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	96	812	2	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185198108	185198108	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0052271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	53	431	0	ENST00000265026.3:c.2590A>T	p.Ser864Cys	p.S864C	ENST00000265026	NM_004721.4	864	Agt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441769	49441769	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	87	635	1	ENST00000301067.7:c.4215C>G	p.His1405Gln	p.H1405Q	ENST00000301067	NM_003482.3	1405	caC/caG																																																																															
MGA	23269	MSKCC	GRCh37	15	42042728	42042728	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	148	285	2	ENST00000219905.7:c.6923A>G	p.Asp2308Gly	p.D2308G	ENST00000219905	NM_001164273.1	2308	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578179	7578179	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0052272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	274	660	1	ENST00000269305.4:c.670G>T	p.Glu224Ter	p.E224*	ENST00000269305	NM_001126112.2	224	Gag/Tag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278198	41278198	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0052272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	126	293	0	ENST00000349496.5:c.2074G>C	p.Glu692Gln	p.E692Q	ENST00000349496	NM_001904.3	692	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0052278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	463	743	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
RB1	5925	MSKCC	GRCh37	13	48878061	48878062	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0052278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	219	261	0	ENST00000267163.4:c.19dup	p.Arg7ProfsTer24	p.R7Pfs*24	ENST00000267163	NM_000321.2	5	acc/aCcc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561358	9561358	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	219	484	0	ENST00000353224.5:c.424A>G	p.Thr142Ala	p.T142A	ENST00000353224	NM_177990.2	142	Acg/Gcg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266221	41266221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	114	355	0	ENST00000349496.5:c.218C>T	p.Ser73Phe	p.S73F	ENST00000349496	NM_001904.3	73	tCc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0052283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	13	401	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0052289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	344	462	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931589		P-0052289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	86	272	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73096464	73096464	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0052289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	47	143	0	ENST00000356692.5:c.244G>T	p.Glu82Ter	p.E82*	ENST00000356692		82	Gaa/Taa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58678007	58678025	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCTCCCGGACGCCGGGG	CCTCTCCCGGACGCCGGGG	-			P-0052289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	83	234	0	ENST00000305921.3:c.236_254del	p.Leu79ArgfsTer80	p.L79Rfs*80	ENST00000305921	NM_003620.3	78	CCTCTCCCGGACGCCGGGGcc/cc																																																																															
IRF4	3662	MSKCC	GRCh37	6	407476	407476	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	74	311	0	ENST00000380956.4:c.1234C>G	p.Gln412Glu	p.Q412E	ENST00000380956	NM_001195286.1	412	Caa/Gaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021819	69021819	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	1297	486	0	ENST00000288368.4:c.3107C>A	p.Ala1036Glu	p.A1036E	ENST00000288368	NM_024870.2	1036	gCa/gAa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040962	47040965	+	frameshift_variant	Frame_Shift_Del	DEL	CGCG	CGCG	-			P-0052289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	153	603	0	ENST00000329236.7:c.1259_1262del	p.Arg420ProfsTer205	p.R420Pfs*205	ENST00000329236	NM_001204466.1	420	CGCGcc/cc																																																																															
POLE	5426	MSKCC	GRCh37	12	133225525	133225525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	41	604	0	ENST00000320574.5:c.4139C>T	p.Ser1380Leu	p.S1380L	ENST00000320574	NM_006231.2	1380	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0052291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	145	655	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49426124	49426124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	106	657	0	ENST00000301067.7:c.12364G>A	p.Gly4122Arg	p.G4122R	ENST00000301067	NM_003482.3	4122	Gga/Aga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115413	115115413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	44	587	0	ENST00000257566.3:c.913G>A	p.Asp305Asn	p.D305N	ENST00000257566	NM_016569.3	305	Gac/Aac																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	145	649	4	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	178	944	4	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	120	495	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	163	425	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	140	749	6	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	152	579	1	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920412	134920412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	166	765	1	ENST00000398015.3:c.2227C>T	p.Arg743Trp	p.R743W	ENST00000398015	NM_004441.4	743	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	196	819	0	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523009	25523009	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	229	1038	3	ENST00000264709.3:c.176delC	p.Pro59ArgfsTer13	p.P59Rfs*13	ENST00000264709	NM_175629.2	59	cCg/cg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	170	1006	7	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664989	138664989	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	47	364	0	ENST00000330315.3:c.576del	p.Lys193SerfsTer78	p.K193Sfs*78	ENST00000330315	NM_023067.3	192	ccC/cc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	230	1227	2	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	231	1116	19	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
CIC	23152	MSKCC	GRCh37	19	42794441	42794441	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	487	1295	1	ENST00000575354.2:c.1526delC	p.Pro509HisfsTer14	p.P509Hfs*14	ENST00000575354	NM_015125.3	507	cgC/cg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116263	209116263	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	139	343	1	ENST00000345146.2:c.13delA	p.Ile5SerfsTer7	p.I5Sfs*7	ENST00000345146	NM_005896.2	5	Atc/tc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905516	50905516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	499	1370	1	ENST00000440232.2:c.644C>T	p.Ala215Val	p.A215V	ENST00000440232	NM_002691.3	215	gCg/gTg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	116	997	0	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945033	31945033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	230	1014	0	ENST00000340398.3:c.68C>T	p.Thr23Met	p.T23M	ENST00000340398	NM_001013699.2	23	aCg/aTg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206648217	206648217	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149591181		P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	128	647	1	ENST00000367120.3:c.238C>T	p.Arg80Trp	p.R80W	ENST00000367120	NM_014002.3	80	Cgg/Tgg																																																																															
B2M	567	MSKCC	GRCh37	15	45007871	45007872	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	155	522	0	ENST00000558401.1:c.319_320delTT	p.Leu107ValfsTer7	p.L107Vfs*7	ENST00000558401	NM_004048.2	106	acTTtg/actg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643942	52643943	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	104	521	0	ENST00000394830.3:c.1953dup	p.Ser652IlefsTer13	p.S652Ifs*13	ENST00000394830	NM_018313.4	651	-/A																																																																															
BCL10	8915	MSKCC	GRCh37	1	85736510	85736511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs387906351		P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	97	395	5	ENST00000370580.1:c.136dup	p.Ile46AsnfsTer4	p.I46Nfs*4	ENST00000370580	NM_003921.4	46	ata/aAta																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404576	8404576	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146844299		P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	84	438	1	ENST00000356435.5:c.4171G>A	p.Ala1391Thr	p.A1391T	ENST00000356435		1391	Gca/Aca																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615698	1615698	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	217	1292	6	ENST00000344749.5:c.1573delC	p.Arg525GlyfsTer18	p.R525Gfs*18	ENST00000344749	NM_001136139.2	525	Cgg/gg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753011	57753012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	97	420	3	ENST00000274289.3:c.1004dupT	p.Leu335PhefsTer12	p.L335Ffs*12	ENST00000274289	NM_006622.3	335	ttg/ttTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41566524	41566525	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	133	498	0	ENST00000263253.7:c.4408dup	p.Met1470AsnfsTer3	p.M1470Nfs*3	ENST00000263253	NM_001429.3	1467	-/A																																																																															
TERT	7015	MSKCC	GRCh37	5	1260644	1260644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	219	949	3	ENST00000310581.5:c.2915G>A	p.Arg972His	p.R972H	ENST00000310581	NM_198253.2	972	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245995	5245996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	193	1069	0	ENST00000357368.4:c.779dup	p.Asn261GlnfsTer30	p.N261Qfs*30	ENST00000357368	NM_002850.3	260	ggc/ggGc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	337	701	11	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
TET2	54790	MSKCC	GRCh37	4	106193850	106193850	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	93	457	1	ENST00000380013.4:c.4317del	p.Lys1439AsnfsTer9	p.K1439Nfs*9	ENST00000380013	NM_001127208.2	1438	Aaa/aa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913836	32913837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	93	530	1	ENST00000380152.3:c.5351dup	p.Asn1784LysfsTer3	p.N1784Kfs*3	ENST00000380152		1782	caa/cAaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420661	49420661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	176	824	0	ENST00000301067.7:c.15088C>T	p.Arg5030Cys	p.R5030C	ENST00000301067	NM_003482.3	5030	Cgt/Tgt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204992	128204992	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	149	1133	2	ENST00000341105.2:c.449del	p.Gly150GlufsTer68	p.G150Efs*68	ENST00000341105	NM_032638.4	150	gGa/ga																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53250047	53250047	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	58	744	3	ENST00000375401.3:c.202del	p.Arg68GlufsTer5	p.R68Efs*5	ENST00000375401	NM_004187.3	68	Cga/ga																																																																															
CARM1	10498	MSKCC	GRCh37	19	11022898	11022899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	261	1020	1	ENST00000327064.4:c.603dup	p.Ala202CysfsTer22	p.A202Cfs*22	ENST00000327064	NM_199141.1	199	-/T																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120366	94120366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	78	391	0	ENST00000369303.4:c.685G>A	p.Glu229Lys	p.E229K	ENST00000369303	NM_004440.3	229	Gag/Aag																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38955709	38955709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	35	404	0	ENST00000357387.3:c.2597G>A	p.Arg866Gln	p.R866Q	ENST00000357387	NM_152756.3	866	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438262	49438262	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	196	903	0	ENST00000301067.7:c.5007del	p.Val1670SerfsTer52	p.V1670Sfs*52	ENST00000301067	NM_003482.3	1669	ccC/cc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	186	895	2	ENST00000407977.2:c.349C>A	p.Arg117Ser	p.R117S	ENST00000407977		117	Cgc/Agc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448297	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	185	867	1	ENST00000407977.2:c.350delG	p.Arg117ProfsTer41	p.R117Pfs*41	ENST00000407977		117	cGc/cc																																																																															
ATRX	546	MSKCC	GRCh37	X	76776393	76776393	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	120	483	1	ENST00000373344.5:c.7073G>T	p.Trp2358Leu	p.W2358L	ENST00000373344	NM_000489.3	2358	tGg/tTg																																																																															
FANCC	2176	MSKCC	GRCh37	9	97864003	97864003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	147	666	1	ENST00000289081.3:c.1663C>T	p.Arg555Ter	p.R555*	ENST00000289081	NM_000136.2	555	Cga/Tga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161180	56161180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	110	422	0	ENST00000399503.3:c.1049C>T	p.Ala350Val	p.A350V	ENST00000399503	NM_005921.1	350	gCa/gTa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164548	36164548	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	124	753	0	ENST00000300305.3:c.1327A>G	p.Asn443Asp	p.N443D	ENST00000300305		443	Aac/Gac																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31464435	31464435	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1190	208	819	0	ENST00000344624.3:c.2482delA	p.Ile828TyrfsTer7	p.I828Yfs*7	ENST00000344624		828	Ata/ta																																																																															
TEK	7010	MSKCC	GRCh37	9	27202961	27202961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	146	646	0	ENST00000380036.4:c.2053G>A	p.Val685Ile	p.V685I	ENST00000380036	NM_000459.3	685	Gtt/Att																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223605	53223605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	175	1085	0	ENST00000375401.3:c.3754C>T	p.Arg1252Cys	p.R1252C	ENST00000375401	NM_004187.3	1252	Cgc/Tgc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670549	30670549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	51	711	0	ENST00000376406.3:c.5971C>T	p.Arg1991Trp	p.R1991W	ENST00000376406	NM_014641.2	1991	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097604	11097604	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	224	1234	1	ENST00000344626.4:c.788del	p.Pro263GlnfsTer40	p.P263Qfs*40	ENST00000344626	NM_003072.3	262	Ccc/cc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909526	50909526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	65	1123	2	ENST00000440232.2:c.1330C>T	p.Arg444Trp	p.R444W	ENST00000440232	NM_002691.3	444	Cgg/Tgg																																																																															
TERT	7015	MSKCC	GRCh37	5	1294642	1294642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	414	880	0	ENST00000310581.5:c.359G>A	p.Arg120His	p.R120H	ENST00000310581	NM_198253.2	120	cGc/cAc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249347	110249348	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	274	1186	0	ENST00000374672.4:c.1225_1226del	p.Lys409GlufsTer14	p.K409Efs*14	ENST00000374672	NM_004235.4	409	AAg/g																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978659	70978659	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	201	813	0	ENST00000276594.2:c.994C>A	p.Arg332Ser	p.R332S	ENST00000276594	NM_024504.3	332	Cgc/Agc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262373	16262373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	83	510	0	ENST00000375759.3:c.9638C>T	p.Ala3213Val	p.A3213V	ENST00000375759	NM_015001.2	3213	gCg/gTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262478	16262478	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	50	320	0	ENST00000375759.3:c.9747del	p.Val3250SerfsTer34	p.V3250Sfs*34	ENST00000375759	NM_015001.2	3248	gCc/gc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932187	36932187	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	165	977	0	ENST00000361632.4:c.2282G>T	p.Ser761Ile	p.S761I	ENST00000361632		761	aGc/aTc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156830841	156830841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	131	801	0	ENST00000524377.1:c.115G>A	p.Ala39Thr	p.A39T	ENST00000524377	NM_002529.3	39	Gcc/Acc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64135983	64135983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	237	1164	0	ENST00000334205.4:c.1244C>A	p.Pro415His	p.P415H	ENST00000334205	NM_003942.2	415	cCt/cAt																																																																															
ETV6	2120	MSKCC	GRCh37	12	11992240	11992240	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	122	455	0	ENST00000396373.4:c.328+2T>C		p.X110_splice	ENST00000396373	NM_001987.4	110																																																																																
CYSLTR2	57105	MSKCC	GRCh37	13	49281877	49281878	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	164	745	0	ENST00000282018.3:c.928dup	p.Glu310GlyfsTer4	p.E310Gfs*4	ENST00000282018	NM_020377.2	308	-/G																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562572	95562572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	90	514	0	ENST00000343455.3:c.4685G>A	p.Cys1562Tyr	p.C1562Y	ENST00000343455	NM_177438.2	1562	tGt/tAt																																																																															
B2M	567	MSKCC	GRCh37	15	45003780	45003781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	119	795	0	ENST00000558401.1:c.43_44dup	p.Ser16PhefsTer29	p.S16Ffs*29	ENST00000558401	NM_004048.2	12	-/CT																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2096344	2096344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	252	1046	0	ENST00000219066.1:c.163G>A	p.Val55Met	p.V55M	ENST00000219066	NM_002528.5	55	Gtg/Atg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3860695	3860695	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	159	766	0	ENST00000262367.5:c.884C>A	p.Pro295His	p.P295H	ENST00000262367	NM_004380.2	295	cCc/cAc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041555	14041555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	144	603	0	ENST00000311895.7:c.2102G>A	p.Arg701His	p.R701H	ENST00000311895	NM_005236.2	701	cGt/cAt																																																																															
FLCN	201163	MSKCC	GRCh37	17	17117000	17117000	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201056799		P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	178	790	1	ENST00000285071.4:c.1709G>A	p.Arg570His	p.R570H	ENST00000285071	NM_144997.5	570	cGc/cAc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56414671	56414671	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	109	519	0	ENST00000348428.3:c.2072A>G	p.Gln691Arg	p.Q691R	ENST00000348428	NM_006785.3	691	cAg/cGg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222110	2222110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	228	1243	1	ENST00000398665.3:c.2942G>A	p.Arg981His	p.R981H	ENST00000398665	NM_032482.2	981	cGc/cAc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18943157	18943157	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	37	256	0	ENST00000262803.5:c.144del	p.Gly49AlafsTer45	p.G49Afs*45	ENST00000262803	NM_002911.3	47	Ccc/cc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46611659	46611659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	227	1032	0	ENST00000263734.3:c.2473C>T	p.Arg825Trp	p.R825W	ENST00000263734	NM_001430.4	825	Cgg/Tgg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659880	227659880	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	156	924	0	ENST00000305123.5:c.3575C>A	p.Pro1192His	p.P1192H	ENST00000305123	NM_005544.2	1192	cCt/cAt																																																																															
EP300	2033	MSKCC	GRCh37	22	41573158	41573158	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	185	1047	0	ENST00000263253.7:c.5443C>T	p.Gln1815Ter	p.Q1815*	ENST00000263253	NM_001429.3	1815	Cag/Tag																																																																															
EP300	2033	MSKCC	GRCh37	22	41574448	41574449	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	155	897	0	ENST00000263253.7:c.6735dup	p.Pro2246SerfsTer56	p.P2246Sfs*56	ENST00000263253	NM_001429.3	2245	ctt/cTtt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37059062	37059062	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	126	640	0	ENST00000231790.2:c.860del	p.Asn287ThrfsTer10	p.N287Tfs*10	ENST00000231790	NM_000249.3	286	Aaa/aa																																																																															
KIT	3815	MSKCC	GRCh37	4	55573361	55573362	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	118	660	0	ENST00000288135.5:c.1026dup	p.Pro343ThrfsTer2	p.P343Tfs*2	ENST00000288135	NM_000222.2	341	-/A																																																																															
MSH3	4437	MSKCC	GRCh37	5	79961184	79961184	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	116	529	0	ENST00000265081.6:c.579+2T>C		p.X193_splice	ENST00000265081	NM_002439.4	193																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32188296	32188297	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	190	1134	1	ENST00000375023.3:c.1044_1045del	p.Gly349HisfsTer4	p.G349Hfs*4	ENST00000375023	NM_004557.3	348	ggCGgc/gggc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521896	157521896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	124	739	0	ENST00000346085.5:c.4168G>A	p.Asp1390Asn	p.D1390N	ENST00000346085	NM_020732.3	1390	Gac/Aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221825	55221825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	200	1062	0	ENST00000275493.2:c.869C>T	p.Thr290Ile	p.T290I	ENST00000275493	NM_005228.3	290	aCc/aTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139404266	139404266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	213	1102	1	ENST00000277541.6:c.2888G>A	p.Cys963Tyr	p.C963Y	ENST00000277541	NM_017617.3	963	tGc/tAc																																																																															
ATM	472	MSKCC	GRCh37	11	108180958	108180959	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0052101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	98	412	0	ENST00000278616.4:c.5835_5836del	p.Gln1946ValfsTer18	p.Q1946Vfs*18	ENST00000278616	NM_000051.3	1945	gCT/g																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445329	49445329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1184	134	848	2	ENST00000301067.7:c.2137G>T	p.Asp713Tyr	p.D713Y	ENST00000301067	NM_003482.3	713	Gac/Tac																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643306	38643312	+	frameshift_variant	Frame_Shift_Del	DEL	CAGACTA	CAGACTA	-			P-0052105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	54	466	1	ENST00000299084.4:c.781_787del	p.Tyr261IlefsTer40	p.Y261Ifs*40	ENST00000299084	NM_152594.2	259	gCAGACTAc/gc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858420	9858420	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0052105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	93	508	0	ENST00000330684.3:c.2981A>G	p.Asn994Ser	p.N994S	ENST00000330684	NM_001134407.1	994	aAc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578506	7578523	+	inframe_deletion	In_Frame_Del	DEL	GGCAGGTCTTGGCCAGTT	GGCAGGTCTTGGCCAGTT	-			P-0052105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	245	778	0	ENST00000269305.4:c.407_424del	p.Gln136_Cys141del	p.Q136_C141del	ENST00000269305	NM_001126112.2	136	cAACTGGCCAAGACCTGCCct/cct																																																																															
STK11	6794	MSKCC	GRCh37	19	1220715	1220716	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	TGTA			P-0052105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	230	630	0	ENST00000326873.7:c.734_734+3dup		p.L245fs	ENST00000326873	NM_000455.4	245	ctc/cTGTAtc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128036758	128036758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	135	445	0	ENST00000285398.2:c.1721G>T	p.Arg574Leu	p.R574L	ENST00000285398	NM_000122.1	574	cGa/cTa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212576887	212576887	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	61	407	0	ENST00000342788.4:c.1012G>C	p.Gly338Arg	p.G338R	ENST00000342788	NM_005235.2	338	Ggc/Cgc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484858	57485003	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTTTGTGGAGTGACCGCCCACCCCCTGCGCTTGCCCAGGAGGCCCTGGTCTGCACTGTTTATAGAGAAGAACCCCGTGCAAGCATTCCAGACCCCTGGCCGAAAGCGCGCTTCTCCCAAGCATTCACACGGCCTCCCTTCTTGT	AGGTTTGTGGAGTGACCGCCCACCCCCTGCGCTTGCCCAGGAGGCCCTGGTCTGCACTGTTTATAGAGAAGAACCCCGTGCAAGCATTCCAGACCCCTGGCCGAAAGCGCGCTTCTCCCAAGCATTCACACGGCCTCCCTTCTTGT	-			P-0052105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	84	526	2	ENST00000371085.3:c.839+1_840-1del		p.X280_splice	ENST00000371085	NM_000516.4	280																																																																																
GNAS	2778	MSKCC	GRCh37	20	57485136	57485387	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGTGTATGGCTTCCACTCTTGCTGGCTGTTCATTGCGGTGGTTCTTTTTCAAACGGTCAGGCTGAAAACCCCCATCCCCCTCCCACCACCAAACCATAAAGGATCTATAAGAGAAGCAAGAAAAACGCACTCCCACTAATTCTCATATGGAAAAATCAGGGTTTTGAAGACTTCAGGAGCTACAGAGATGCTAGCACCCCAGCTCTGCTTGAATTTTAAATTACATTAATATGTATTCCCTTTTTATATA	GGTGTGTATGGCTTCCACTCTTGCTGGCTGTTCATTGCGGTGGTTCTTTTTCAAACGGTCAGGCTGAAAACCCCCATCCCCCTCCCACCACCAAACCATAAAGGATCTATAAGAGAAGCAAGAAAAACGCACTCCCACTAATTCTCATATGGAAAAATCAGGGTTTTGAAGACTTCAGGAGCTACAGAGATGCTAGCACCCCAGCTCTGCTTGAATTTTAAATTACATTAATATGTATTCCCTTTTTATATA	-			P-0052105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	54	330	0	ENST00000371085.3:c.970+1_971-1del		p.X324_splice	ENST00000371085	NM_000516.4	324																																																																																
GNAS	2778	MSKCC	GRCh37	20	57485456	57485736	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGAGTCGAGCCTGTCTTTAGTTTCCTCTCTTGTTCCTCCTCTTTTTCTCATGGATGTAAATTTACTTAATTCCAAATTCAGGGGTTCAGCTACCCAGTTCCATGGTTTTAGTTCACGCACATCCAGTGTGGATTTGAGCTCTTTGCGCCCCTCTTTTTGCTTTTGTTTTCATATGACATCAGAGGCTGGCTGACAGCCGTCCCTGGTAGGTGTCCCCATCAGGGATAGGGTGGTTCCTGGCGAGGGTGTCACTGACAAGTCCCCTTGTTTGTGCCCGCA	GGTGAGTCGAGCCTGTCTTTAGTTTCCTCTCTTGTTCCTCCTCTTTTTCTCATGGATGTAAATTTACTTAATTCCAAATTCAGGGGTTCAGCTACCCAGTTCCATGGTTTTAGTTCACGCACATCCAGTGTGGATTTGAGCTCTTTGCGCCCCTCTTTTTGCTTTTGTTTTCATATGACATCAGAGGCTGGCTGACAGCCGTCCCTGGTAGGTGTCCCCATCAGGGATAGGGTGGTTCCTGGCGAGGGTGTCACTGACAAGTCCCCTTGTTTGTGCCCGCA	-			P-0052105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	37	333	0	ENST00000371085.3:c.1038+1_1039-1del		p.X346_splice	ENST00000371085	NM_000516.4	346																																																																																
TGFBR2	7048	MSKCC	GRCh37	3	30713483	30713483	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0052105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	257	546	0	ENST00000359013.4:c.883C>T	p.Gln295Ter	p.Q295*	ENST00000359013	NM_001024847.2	295	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0052105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	204	303	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039704	47039704	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0052105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	209	306	0	ENST00000329236.7:c.922A>T	p.Lys308Ter	p.K308*	ENST00000329236	NM_001204466.1	308	Aag/Tag																																																																															
ATRX	546	MSKCC	GRCh37	X	76890140	76890140	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	56	246	0	ENST00000373344.5:c.4754C>A	p.Ser1585Tyr	p.S1585Y	ENST00000373344	NM_000489.3	1585	tCt/tAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873683	151873683	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0052122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	111	622	0	ENST00000262189.6:c.8855C>G	p.Ser2952Ter	p.S2952*	ENST00000262189	NM_170606.2	2952	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0052132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	58	728	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631129	69631129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	49	600	1	ENST00000334134.2:c.283C>T	p.Arg95Trp	p.R95W	ENST00000334134	NM_005247.2	95	Cgg/Tgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600470	10600470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	69	671	0	ENST00000171111.5:c.1385G>T	p.Gly462Val	p.G462V	ENST00000171111	NM_203500.1	462	gGg/gTg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264321	30264321	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	16	102	0	ENST00000322652.5:c.56G>T	p.Gly19Val	p.G19V	ENST00000322652	NM_015355.2	19	gGg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0050045-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			386	62	318	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TET1	80312	MSKCC	GRCh37	10	70405962	70405962	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140289196		P-0050045-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			527	170	488	1	ENST00000373644.4:c.3476G>A	p.Arg1159Gln	p.R1159Q	ENST00000373644	NM_030625.2	1159	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786204041		P-0050045-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			612	247	760	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858492	9858492	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148669437		P-0050045-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			567	121	552	1	ENST00000330684.3:c.2909G>A	p.Arg970Gln	p.R970Q	ENST00000330684	NM_001134407.1	970	cGg/cAg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085789	16085789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050045-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			586	201	533	0	ENST00000281043.3:c.965G>A	p.Arg322Gln	p.R322Q	ENST00000281043	NM_005378.4	322	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050045-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			249	64	244	0	ENST00000257430.4:c.3916G>C	p.Glu1306Gln	p.E1306Q	ENST00000257430	NM_000038.5	1306	Gaa/Caa																																																																															
APC	324	MSKCC	GRCh37	5	112175334	112175503	+	frameshift_variant	Frame_Shift_Del	DEL	GGCACAAAGCTGTTGAATTTTCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTATGTTCAGGAGACCCCACTCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAGTCGTTCGATTGCCAGCTCC	GGCACAAAGCTGTTGAATTTTCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTATGTTCAGGAGACCCCACTCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAGTCGTTCGATTGCCAGCTCC	-			P-0050045-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			293	67	230	0	ENST00000257430.4:c.4044_4213del	p.Arg1348SerfsTer4	p.R1348Sfs*4	ENST00000257430	NM_000038.5	1348	aGGCACAAAGCTGTTGAATTTTCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTATGTTCAGGAGACCCCACTCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAGTCGTTCGATTGCCAGCTCC/a																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222727	53222727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050045-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1341	92	939	2	ENST00000375401.3:c.4209G>A	p.Met1403Ile	p.M1403I	ENST00000375401	NM_004187.3	1403	atG/atA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	171	442	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1221302	1221302	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	416	825	0	ENST00000326873.7:c.827del	p.Gly276AlafsTer11	p.G276Afs*11	ENST00000326873	NM_000455.4	275	ccG/cc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610222	10610222	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	458	810	0	ENST00000171111.5:c.488A>T	p.Gln163Leu	p.Q163L	ENST00000171111	NM_203500.1	163	cAg/cTg																																																																															
ATM	472	MSKCC	GRCh37	11	108172457	108172457	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0052034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	61	406	0	ENST00000278616.4:c.5260A>T	p.Lys1754Ter	p.K1754*	ENST00000278616	NM_000051.3	1754	Aag/Tag																																																																															
TET1	80312	MSKCC	GRCh37	10	70333869	70333869	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	135	369	0	ENST00000373644.4:c.1774G>T	p.Gly592Trp	p.G592W	ENST00000373644	NM_030625.2	592	Ggg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108164038	108164038	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0052034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	42	135	0	ENST00000278616.4:c.4612-2A>T		p.X1538_splice	ENST00000278616	NM_000051.3	1538																																																																																
JAK3	3718	MSKCC	GRCh37	19	17947977	17947977	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	317	807	1	ENST00000458235.1:c.1747C>A	p.His583Asn	p.H583N	ENST00000458235	NM_000215.3	583	Cat/Aat																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163808	152163808	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0052034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	183	460	0	ENST00000206249.3:c.529G>T	p.Glu177Ter	p.E177*	ENST00000206249	NM_000125.3	177	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	170	929	0	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664915	138664915	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	58	271	0	ENST00000330315.3:c.650C>G	p.Ser217Cys	p.S217C	ENST00000330315	NM_023067.3	217	tCc/tGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	protein_altering_variant	In_Frame_Ins	INS	-	-	GTT			P-0052091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	385	832	0	ENST00000275493.2:c.2308_2309insGTT	p.Asp770delinsGlyTyr	p.D770delinsGY	ENST00000275493	NM_005228.3	770	gac/gGTTac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578242	7578242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	301	714	0	ENST00000269305.4:c.607G>T	p.Val203Leu	p.V203L	ENST00000269305	NM_001126112.2	203	Gtg/Ttg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851697	134851697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	239	774	0	ENST00000398015.3:c.1103G>A	p.Arg368Gln	p.R368Q	ENST00000398015	NM_004441.4	368	cGg/cAg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56477589	56477589	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	305	682	0	ENST00000267101.3:c.137A>C	p.Tyr46Ser	p.Y46S	ENST00000267101	NM_001982.3	46	tAc/tCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0051789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	157	682	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0051789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	67	316	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873066	134873066	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762457030		P-0051789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	104	617	0	ENST00000398015.3:c.1370C>T	p.Pro457Leu	p.P457L	ENST00000398015	NM_004441.4	457	cCg/cTg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175876	176175876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	11	239	0	ENST00000367669.3:c.239G>T	p.Gly80Val	p.G80V	ENST00000367669	NM_022457.5	80	gGg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380264	25380265	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGTACTCCTCTTGACCTGCTGTGTCGAGAATATCCA			P-0051789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	80	489	0	ENST00000256078.4:c.158_193dup	p.Tyr64_Ser65insMetAspIleLeuAspThrAlaGlyGlnGluGluTyr	p.Y64_S65insMDILDTAGQEEY	ENST00000256078	NM_033360.2	65	agt/aTGGATATTCTCGACACAGCAGGTCAAGAGGAGTACAgt																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845292	42845294	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0052055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	272	783	0	ENST00000398585.3:c.968_970del	p.Ile323del	p.I323del	ENST00000398585	NM_001135099.1	323	aTCAcc/acc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061248	38061248	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0052055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	169	581	0	ENST00000250448.2:c.741C>G	p.His247Gln	p.H247Q	ENST00000250448	NM_004496.3	247	caC/caG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0034798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	196	572	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342592	87342592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	62	377	1	ENST00000277120.3:c.877G>A	p.Glu293Lys	p.E293K	ENST00000277120		293	Gaa/Aaa																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182662899	182662899	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	47	452	0	ENST00000292782.4:c.763A>G	p.Lys255Glu	p.K255E	ENST00000292782	NM_020640.2	255	Aaa/Gaa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435300	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-	rs765493638		P-0043007-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			68	11	13	0	ENST00000375856.3:c.3099_3101del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1033	ccACCg/ccg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248120	110248120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043007-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			473	175	410	0	ENST00000374672.4:c.1352C>T	p.Thr451Met	p.T451M	ENST00000374672	NM_004235.4	451	aCg/aTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342474	118342474	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043007-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	98	202	0	ENST00000534358.1:c.600T>A	p.Asn200Lys	p.N200K	ENST00000534358	NM_005933.3	200	aaT/aaA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0050906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			44	78	91	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0050906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			40	83	140	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			60	119	130	0	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa																																																																															
STAT3	6774	MSKCC	GRCh37	17	40498589	40498589	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0050906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			72	143	158	0	ENST00000264657.5:c.271C>T	p.Gln91Ter	p.Q91*	ENST00000264657	NM_139276.2	91	Cag/Tag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464454	25464454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			110	269	704	0	ENST00000264709.3:c.2059G>A	p.Val687Ile	p.V687I	ENST00000264709	NM_175629.2	687	Gtc/Atc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732967	30732967	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			97	169	466	0	ENST00000359013.4:c.1657del	p.Arg553ValfsTer36	p.R553Vfs*36	ENST00000359013	NM_001024847.2	552	gCc/gc																																																																															
MGA	23269	MSKCC	GRCh37	15	42002898	42002898	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0050906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			46	94	100	0	ENST00000219905.7:c.2435C>G	p.Ser812Ter	p.S812*	ENST00000219905	NM_001164273.1	812	tCa/tGa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2133720	2133720	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			374	244	1043	1	ENST00000219476.3:c.3908G>T	p.Gly1303Val	p.G1303V	ENST00000219476	NM_000548.3	1303	gGa/gTa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639035	3639035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			386	253	809	0	ENST00000294008.3:c.4604G>A	p.Gly1535Glu	p.G1535E	ENST00000294008	NM_032444.2	1535	gGa/gAa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23619278	23619278	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146377793		P-0050906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			323	180	403	0	ENST00000261584.4:c.3257G>A	p.Arg1086Gln	p.R1086Q	ENST00000261584	NM_024675.3	1086	cGa/cAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29663704	29663704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			85	131	143	0	ENST00000358273.4:c.6199C>T	p.Pro2067Ser	p.P2067S	ENST00000358273	NM_001042492.2	2067	Cct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050986-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			189	61	428	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207168	1207168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050986-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			384	84	750	1	ENST00000326873.7:c.256C>T	p.Arg86Ter	p.R86*	ENST00000326873	NM_000455.4	86	Cga/Tga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602688	10602688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050986-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			234	51	798	2	ENST00000171111.5:c.890G>T	p.Cys297Phe	p.C297F	ENST00000171111	NM_203500.1	297	tGc/tTc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103506194	103506194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050986-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			153	17	401	0	ENST00000355739.4:c.352G>T	p.Ala118Ser	p.A118S	ENST00000355739	NM_000123.3	118	Gcc/Tcc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937608	32937608	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050986-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			184	28	506	0	ENST00000380152.3:c.8269G>T	p.Glu2757Ter	p.E2757*	ENST00000380152		2757	Gaa/Taa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569931	95569931	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050986-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			189	33	469	0	ENST00000343455.3:c.3802A>G	p.Ile1268Val	p.I1268V	ENST00000343455	NM_177438.2	1268	Att/Gtt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135074	11135079	+	inframe_deletion	In_Frame_Del	DEL	AGGGCG	AGGGCG	-			P-0050986-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			273	61	844	0	ENST00000344626.4:c.3041_3046del	p.Lys1014_Val1016delinsMet	p.K1014_V1016delinsM	ENST00000344626	NM_003072.3	1014	aAGGGCGtg/atg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955051	17955051	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050986-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			354	53	806	0	ENST00000458235.1:c.176A>C	p.Lys59Thr	p.K59T	ENST00000458235	NM_000215.3	59	aAg/aCg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	438024	438024	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050986-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			170	34	334	0	ENST00000399788.2:c.1945T>G	p.Leu649Val	p.L649V	ENST00000399788	NM_001042603.1	649	Tta/Gta																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18649069	18649069	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050986-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			263	28	433	0	ENST00000266497.5:c.2744A>T	p.Asn915Ile	p.N915I	ENST00000266497		915	aAc/aTc																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40678561	40678561	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0050986-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			243	33	480	0	ENST00000249776.8:c.305-2A>T		p.X102_splice	ENST00000249776	NM_033286.3	102																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178928067	178928093	+	inframe_deletion	In_Frame_Del	DEL	CCTCATGGATTAGAAGATTTGCTGAAC	CCTCATGGATTAGAAGATTTGCTGAAC	-			P-0051224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	199	421	0	ENST00000263967.3:c.1348_1374del	p.His450_Pro458del	p.H450_P458del	ENST00000263967	NM_006218.2	449	CCTCATGGATTAGAAGATTTGCTGAAC/-																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625225	69625225	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	108	809	0	ENST00000334134.2:c.568A>G	p.Met190Val	p.M190V	ENST00000334134	NM_005247.2	190	Atg/Gtg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672725	30672725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	215	691	1	ENST00000376406.3:c.4235C>T	p.Pro1412Leu	p.P1412L	ENST00000376406	NM_014641.2	1412	cCt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0051814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	104	331	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0051814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	93	275	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0051814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	90	290	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173926	112173926	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	63	290	0	ENST00000257430.4:c.2635C>T	p.Gln879Ter	p.Q879*	ENST00000257430	NM_000038.5	879	Cag/Tag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214666	5214666	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116660613		P-0051814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	163	735	0	ENST00000357368.4:c.4400C>T	p.Pro1467Leu	p.P1467L	ENST00000357368	NM_002850.3	1467	cCg/cTg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265446	152265446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	140	421	0	ENST00000206249.3:c.899G>A	p.Arg300His	p.R300H	ENST00000206249	NM_000125.3	300	cGc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133202261	133202261	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	199	565	0	ENST00000320574.5:c.6627G>C	p.Lys2209Asn	p.K2209N	ENST00000320574	NM_006231.2	2209	aaG/aaC																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45394712	45394712	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	98	287	0	ENST00000262160.6:c.637C>T	p.Gln213Ter	p.Q213*	ENST00000262160	NM_005901.5	213	Cag/Tag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968164	68968164	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	224	413	0	ENST00000288368.4:c.1193A>T	p.Asp398Val	p.D398V	ENST00000288368	NM_024870.2	398	gAc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	138	342	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0051816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	166	320	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0051816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	66	223	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	308	289	2	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38949917	38949917	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	26	279	0	ENST00000357387.3:c.4033T>G	p.Leu1345Val	p.L1345V	ENST00000357387	NM_152756.3	1345	Tta/Gta																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100600	8100600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	201	593	0	ENST00000346208.3:c.574G>A	p.Asp192Asn	p.D192N	ENST00000346208		192	Gac/Aac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281607	15281607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	124	542	0	ENST00000263388.2:c.4766G>A	p.Arg1589Gln	p.R1589Q	ENST00000263388	NM_000435.2	1589	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112173826	112173826	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0051816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	53	261	0	ENST00000257430.4:c.2536del	p.Ser846LeufsTer15	p.S846Lfs*15	ENST00000257430	NM_000038.5	845	cgT/cg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420409	49420409	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0051817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	38	663	1	ENST00000301067.7:c.15340del	p.His5114IlefsTer33	p.H5114Ifs*33	ENST00000301067	NM_003482.3	5114	Cat/at																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096047	11096048	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0051817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	58	756	0	ENST00000344626.4:c.326dup	p.Pro110AlafsTer19	p.P110Afs*19	ENST00000344626	NM_003072.3	107	-/C																																																																															
ATRX	546	MSKCC	GRCh37	X	76875872	76875872	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	107	206	0	ENST00000373344.5:c.5263C>G	p.Leu1755Val	p.L1755V	ENST00000373344	NM_000489.3	1755	Cta/Gta																																																																															
ATRX	546	MSKCC	GRCh37	X	76920238	76920238	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	15	190	0	ENST00000373344.5:c.3839T>A	p.Ile1280Asn	p.I1280N	ENST00000373344	NM_000489.3	1280	aTt/aAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0051820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	107	745	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133256202	133256202	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	67	463	0	ENST00000320574.5:c.459C>G	p.Ile153Met	p.I153M	ENST00000320574	NM_006231.2	153	atC/atG																																																																															
MEN1	4221	MSKCC	GRCh37	11	64571932	64571932	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	101	739	0	ENST00000337652.1:c.1722del	p.Ile575SerfsTer18	p.I575Sfs*18	ENST00000337652	NM_130803.2	574	aaG/aa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500637	99500637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	57	595	0	ENST00000268035.6:c.4070G>T	p.Arg1357Leu	p.R1357L	ENST00000268035	NM_000875.3	1357	cGg/cTg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641575	23641575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	38	603	0	ENST00000261584.4:c.1900C>T	p.Pro634Ser	p.P634S	ENST00000261584	NM_024675.3	634	Cca/Tca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991610	72991610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	31	592	0	ENST00000268489.5:c.2435A>G	p.Glu812Gly	p.E812G	ENST00000268489	NM_006885.3	812	gAg/gGg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271898	15271898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	62	915	0	ENST00000263388.2:c.6541C>T	p.Pro2181Ser	p.P2181S	ENST00000263388	NM_000435.2	2181	Cca/Tca																																																																															
MET	4233	MSKCC	GRCh37	7	116412032	116412046	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTTTCCAGAAGGTA	CTTTTCCAGAAGGTA	AGGTG			P-0051823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	540	639	1	ENST00000397752.3:c.3017_3028+3delinsAGGTG		p.X1006_splice	ENST00000397752	NM_000245.2	1006																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0051879-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			327	168	463	2	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051879-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			181	214	528	7	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061463	38061463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051879-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			324	193	478	5	ENST00000250448.2:c.526A>G	p.Ile176Val	p.I176V	ENST00000250448	NM_004496.3	176	Atc/Gtc																																																																															
CDH1	999	MSKCC	GRCh37	16	68853184	68853185	+	stop_gained,frameshift_variant,splice_region_variant	Nonsense_Mutation	INS	-	-	A			P-0051879-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			135	151	475	0	ENST00000261769.5:c.1568dupA	p.Tyr523Ter	p.Y523*	ENST00000261769	NM_004360.3	523	tat/tAat																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987418	2987418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051879-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			436	27	459	0	ENST00000396946.4:c.11G>A	p.Gly4Glu	p.G4E	ENST00000396946	NM_032415.4	4	gGa/gAa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120642	115120642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051879-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			438	269	629	3	ENST00000257566.3:c.364G>A	p.Glu122Lys	p.E122K	ENST00000257566	NM_016569.3	122	Gag/Aag																																																																															
RB1	5925	MSKCC	GRCh37	13	48936950	48936950	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0051879-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			83	86	292	0	ENST00000267163.4:c.719-1G>A		p.X240_splice	ENST00000267163	NM_000321.2	240																																																																																
MDM2	4193	MSKCC	GRCh37	12	69218419	69218419	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051879-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			268	129	424	4	ENST00000462284.1:c.511A>T	p.Ile171Phe	p.I171F	ENST00000462284	NM_002392.5	171	Att/Ttt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0051893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	23	413	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0051893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	23	551	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0051894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	267	516	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																															
CALR	811	MSKCC	GRCh37	19	13049967	13049967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	190	426	3	ENST00000316448.5:c.111G>T	p.Trp37Cys	p.W37C	ENST00000316448	NM_004343.3	37	tgG/tgT																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120469132	120469133	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0051894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	101	470	0	ENST00000256646.2:c.3994_3995delinsTT	p.Arg1332Phe	p.R1332F	ENST00000256646	NM_024408.3	1332	CGt/TTt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712593	43712593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	278	725	0	ENST00000382044.4:c.4591G>A	p.Asp1531Asn	p.D1531N	ENST00000382044	NM_001141980.1	1531	Gat/Aat																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783825	50783825	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0051894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	93	543	1	ENST00000398568.2:c.220del	p.Ile74PhefsTer2	p.I74Ffs*2	ENST00000398568	NM_001042412.1	72	ttA/tt																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30320330	30320330	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	98	239	0	ENST00000322652.5:c.1271A>T	p.Gln424Leu	p.Q424L	ENST00000322652	NM_015355.2	424	cAa/cTa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5225743	5225743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	106	693	0	ENST00000357368.4:c.2489G>A	p.Gly830Glu	p.G830E	ENST00000357368	NM_002850.3	830	gGa/gAa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918754	50918754	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	299	794	1	ENST00000440232.2:c.2624G>T	p.Arg875Leu	p.R875L	ENST00000440232	NM_002691.3	875	cGc/cTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101038	41101038	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	357	675	0	ENST00000373198.4:c.1318G>T	p.Val440Phe	p.V440F	ENST00000373198	NM_133170.3	440	Gtc/Ttc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627798	187627798	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	230	485	0	ENST00000441802.2:c.3184G>T	p.Asp1062Tyr	p.D1062Y	ENST00000441802	NM_005245.3	1062	Gac/Tac																																																																															
HGF	3082	MSKCC	GRCh37	7	81386541	81386541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	132	431	0	ENST00000222390.5:c.446G>A	p.Cys149Tyr	p.C149Y	ENST00000222390	NM_000601.4	149	tGt/tAt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38272337	38272337	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	262	578	0	ENST00000425967.3:c.2030G>T	p.Arg677Leu	p.R677L	ENST00000425967	NM_001174067.1	677	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0051898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	242	381	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
STK11	6794	MSKCC	GRCh37	19	1221998	1221998	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	205	670	1	ENST00000326873.7:c.913C>T	p.Gln305Ter	p.Q305*	ENST00000326873	NM_000455.4	305	Cag/Tag																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64286881	64286884	+	frameshift_variant	Frame_Shift_Del	DEL	ATTT	ATTT	-			P-0051898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	49	298	0	ENST00000370651.3:c.98_101del	p.Phe33Ter	p.F33*	ENST00000370651	NM_003463.4	32	aaATTT/aa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599949	10599950	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0051898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	135	799	0	ENST00000171111.5:c.1626_1627delGA	p.Glu542AspfsTer31	p.E542Dfs*31	ENST00000171111	NM_203500.1	542	gaGAcg/gacg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599948	10599950	+	frameshift_variant	Frame_Shift_Del	DEL	GTC	GTC	A			P-0051898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	151	795	0	ENST00000171111.5:c.1626_1628delinsT	p.Glu542AspfsTer31	p.E542Dfs*31	ENST00000171111	NM_203500.1	542	gaGACg/gaTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	72	420	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602715	10602715	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	98	974	0	ENST00000171111.5:c.863G>T	p.Cys288Phe	p.C288F	ENST00000171111	NM_203500.1	288	tGc/tTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411011	63411011	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	41	671	0	ENST00000330258.3:c.2156T>A	p.Met719Lys	p.M719K	ENST00000330258	NM_152424.3	719	aTg/aAg																																																																															
ATR	545	MSKCC	GRCh37	3	142211977	142211977	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0051899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	60	339	1	ENST00000350721.4:c.6075T>A	p.Tyr2025Ter	p.Y2025*	ENST00000350721	NM_001184.3	2025	taT/taA																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129957	55129957	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	86	558	0	ENST00000257290.5:c.491G>T	p.Ser164Ile	p.S164I	ENST00000257290	NM_006206.4	164	aGt/aTt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962294	2962294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	87	800	0	ENST00000396946.4:c.2243C>A	p.Thr748Lys	p.T748K	ENST00000396946	NM_032415.4	748	aCg/aAg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730044	41730044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	46	576	1	ENST00000242208.4:c.485C>T	p.Pro162Leu	p.P162L	ENST00000242208	NM_002192.2	162	cCc/cTc																																																																															
ATRX	546	MSKCC	GRCh37	X	76763983	76763983	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0051899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	57	636	0	ENST00000373344.5:c.7325del	p.Pro2442GlnfsTer3	p.P2442Qfs*3	ENST00000373344	NM_000489.3	2442	cCa/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	37	407	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0051900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	109	476	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577505	7577506	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0051900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	80	641	0	ENST00000269305.4:c.775_776delinsTT	p.Asp259Phe	p.D259F	ENST00000269305	NM_001126112.2	259	GAc/TTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0051901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	132	604	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47035920	47035920	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	148	679	1	ENST00000329236.7:c.367C>T	p.Gln123Ter	p.Q123*	ENST00000329236	NM_001204466.1	123	Cag/Tag																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0051901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	1159	573	0	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
RECQL4	9401	MSKCC	GRCh37	8	145738829	145738829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	105	1076	2	ENST00000428558.2:c.2236G>A	p.Ala746Thr	p.A746T	ENST00000428558	NM_004260.3	746	Gcg/Acg																																																																															
CBL	867	MSKCC	GRCh37	11	119155983	119155983	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202065722		P-0051906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	355	614	0	ENST00000264033.4:c.1648C>T	p.Arg550Trp	p.R550W	ENST00000264033	NM_005188.3	550	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	406	449	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
TET1	80312	MSKCC	GRCh37	10	70333932	70333932	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0051906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	182	320	0	ENST00000373644.4:c.1837A>T	p.Lys613Ter	p.K613*	ENST00000373644	NM_030625.2	613	Aag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108098502	108098502	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0051906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	96	161	0	ENST00000278616.4:c.73-1G>T		p.X25_splice	ENST00000278616	NM_000051.3	25																																																																																
PREX2	80243	MSKCC	GRCh37	8	69033276	69033276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	39	404	0	ENST00000288368.4:c.3716T>A	p.Phe1239Tyr	p.F1239Y	ENST00000288368	NM_024870.2	1239	tTt/tAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	249	378	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0051907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	304	853	1	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500417	99500417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	109	715	0	ENST00000268035.6:c.3850G>A	p.Glu1284Lys	p.E1284K	ENST00000268035	NM_000875.3	1284	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092947	27092947	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0051907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	39	260	0	ENST00000324856.7:c.2879-1G>A		p.X960_splice	ENST00000324856	NM_006015.4	960																																																																																
MDC1	9656	MSKCC	GRCh37	6	30673794	30673794	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	89	448	1	ENST00000376406.3:c.3166C>G	p.Gln1056Glu	p.Q1056E	ENST00000376406	NM_014641.2	1056	Cag/Gag																																																																															
PGR	5241	MSKCC	GRCh37	11	100912777	100912777	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	123	355	0	ENST00000325455.5:c.2545A>G	p.Ile849Val	p.I849V	ENST00000325455	NM_001202474.3	849	Att/Gtt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99451961	99451961	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	81	393	0	ENST00000268035.6:c.1295G>T	p.Trp432Leu	p.W432L	ENST00000268035	NM_000875.3	432	tGg/tTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210914	36210914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	157	841	0	ENST00000222270.7:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000222270	NM_014727.1	222	cGg/cAg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753675	42753675	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	147	900	0	ENST00000222329.4:c.589G>T	p.Glu197Ter	p.E197*	ENST00000222329	NM_006494.2	197	Gag/Tag																																																																															
SOS1	6654	MSKCC	GRCh37	2	39233636	39233636	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	161	426	0	ENST00000402219.2:c.2708A>C	p.Glu903Ala	p.E903A	ENST00000402219	NM_005633.3	903	gAa/gCa																																																																															
MITF	4286	MSKCC	GRCh37	3	70005608	70005608	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0051907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	86	346	0	ENST00000352241.4:c.940G>A	p.Glu314Lys	p.E314K	ENST00000352241	NM_198159.2	314	Gaa/Aaa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87482282	87482282	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs201888268		P-0051907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	62	547	0	ENST00000277120.3:c.1569G>C	p.Lys523Asn	p.K523N	ENST00000277120		523	aaG/aaC																																																																															
FANCC	2176	MSKCC	GRCh37	9	98011412	98011412	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	110	348	0	ENST00000289081.3:c.162G>C	p.Glu54Asp	p.E54D	ENST00000289081	NM_000136.2	54	gaG/gaC																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115842	8115843	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0051908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	206	491	0	ENST00000346208.3:c.1189dup	p.Ser397PhefsTer110	p.S397Ffs*110	ENST00000346208		396	-/T																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965075	25965076	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0051908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	71	465	0	ENST00000435504.4:c.4130dup	p.Ser1377ArgfsTer43	p.S1377Rfs*43	ENST00000435504		1377	agc/agGc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48032784	48032784	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	21	253	0	ENST00000234420.5:c.3584G>C	p.Ser1195Thr	p.S1195T	ENST00000234420	NM_000179.2	1195	aGt/aCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579419	7579419	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0051910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	168	771	0	ENST00000269305.4:c.268delT	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	90	Tcc/cc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874373	151874373	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	25	295	0	ENST00000262189.6:c.8165T>C	p.Leu2722Ser	p.L2722S	ENST00000262189	NM_170606.2	2722	tTa/tCa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139404348	139404348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	144	772	0	ENST00000277541.6:c.2806G>T	p.Gly936Cys	p.G936C	ENST00000277541	NM_017617.3	936	Ggc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	29	381	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185183540	185183540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	40	298	0	ENST00000265026.3:c.1394C>T	p.Ala465Val	p.A465V	ENST00000265026	NM_004721.4	465	gCg/gTg																																																																															
BCL6	604	MSKCC	GRCh37	3	187444519	187444519	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0051911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	39	545	0	ENST00000232014.4:c.1708G>A	p.Gly570Ser	p.G570S	ENST00000232014	NM_001130845.1	570	Ggt/Agt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675556	86675556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	15	194	0	ENST00000274376.6:c.2492G>A	p.Ser831Asn	p.S831N	ENST00000274376	NM_002890.2	831	aGt/aAt																																																																															
ATM	472	MSKCC	GRCh37	11	108124541	108124541	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0051911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	17	216	0	ENST00000278616.4:c.1899T>A	p.Cys633Ter	p.C633*	ENST00000278616	NM_000051.3	633	tgT/tgA																																																																															
GNAS	2778	MSKCC	GRCh37	20	57478599	57478599	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	24	373	0	ENST00000371085.3:c.271A>G	p.Lys91Glu	p.K91E	ENST00000371085	NM_000516.4	91	Aaa/Gaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0051940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	11	378	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0051940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	15	649	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0051942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	16	706	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	42	507	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061192	38061194	+	missense_variant	Missense_Mutation	ONP	AAG	AAG	CTT			P-0051945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	16	334	0	ENST00000250448.2:c.795_797inv	p.Phe266Ser	p.F266S	ENST00000250448	NM_004496.3	265	cgCTTc/cgAAGc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288573	33288573	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs202141130		P-0051969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	167	448	1	ENST00000374542.5:c.979C>T	p.Arg327Ter	p.R327*	ENST00000374542	NM_001141970.1	327	Cga/Tga																																																																															
MLH1	4292	MSKCC	GRCh37	3	37083803	37083803	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	281	430	0	ENST00000231790.2:c.1712T>G	p.Phe571Cys	p.F571C	ENST00000231790	NM_000249.3	571	tTt/tGt																																																																															
ATR	545	MSKCC	GRCh37	3	142281177	142281177	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	45	440	0	ENST00000350721.4:c.1067T>A	p.Phe356Tyr	p.F356Y	ENST00000350721	NM_001184.3	356	tTt/tAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0051978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	192	583	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	76	312	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921566	178921566	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793349		P-0051978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	104	336	0	ENST00000263967.3:c.1048G>A	p.Asp350Asn	p.D350N	ENST00000263967	NM_006218.2	350	Gac/Aac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117311	115117311	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0051978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	114	310	0	ENST00000257566.3:c.863delA	p.Lys288ArgfsTer2	p.K288Rfs*2	ENST00000257566	NM_016569.3	288	aAg/ag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111475	8111479	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAC	CAGAC	-			P-0051978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	236	632	1	ENST00000346208.3:c.963_967del	p.Gln321HisfsTer29	p.Q321Hfs*29	ENST00000346208		321	CAGACc/c																																																																															
PGR	5241	MSKCC	GRCh37	11	100998865	100998865	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	266	765	0	ENST00000325455.5:c.937C>G	p.His313Asp	p.H313D	ENST00000325455	NM_001202474.3	313	Cac/Gac																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742994	17742994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	109	772	1	ENST00000250003.3:c.902C>T	p.Pro301Leu	p.P301L	ENST00000250003	NM_002478.4	301	cCg/cTg																																																																															
ATM	472	MSKCC	GRCh37	11	108235935	108235935	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs770641163		P-0052041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	34	418	0	ENST00000278616.4:c.8977C>T	p.Arg2993Ter	p.R2993*	ENST00000278616	NM_000051.3	2993	Cga/Tga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427451	427451	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0052041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	84	598	0	ENST00000399788.2:c.2718A>C	p.Glu906Asp	p.E906D	ENST00000399788	NM_001042603.1	906	gaA/gaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0052041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	75	412	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424779	49424779	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0052041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	79	658	0	ENST00000301067.7:c.13568A>T	p.Lys4523Met	p.K4523M	ENST00000301067	NM_003482.3	4523	aAg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440206	49440206	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0052041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	45	559	0	ENST00000301067.7:c.4420T>G	p.Cys1474Gly	p.C1474G	ENST00000301067	NM_003482.3	1474	Tgt/Ggt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73345073	73345073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	27	399	1	ENST00000377767.4:c.1724C>T	p.Thr575Met	p.T575M	ENST00000377767	NM_014953.3	575	aCg/aTg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99482548	99482548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	106	656	0	ENST00000268035.6:c.3416G>A	p.Arg1139Gln	p.R1139Q	ENST00000268035	NM_000875.3	1139	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0052041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	104	790	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578528	7578528	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	126	918	0	ENST00000269305.4:c.402T>G	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	ttT/ttG																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0052041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	60	486	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627634	14627636	+	missense_variant	Missense_Mutation	ONP	AGT	AGT	CGG			P-0052041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	74	600	0	ENST00000254322.2:c.434_436delinsCCG	p.Asn145_Phe146delinsThrVal	p.N145_F146delinsTV	ENST00000254322	NM_006145.1	145	aACTtt/aCCGtt																																																																															
ERF	2077	MSKCC	GRCh37	19	42752714	42752714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	97	874	1	ENST00000222329.4:c.1550G>A	p.Gly517Glu	p.G517E	ENST00000222329	NM_006494.2	517	gGg/gAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266072	41266664	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	TCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGTGCAATCCC	TCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGTGCAATCCC	-			P-0052041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	30	354	0	ENST00000349496.5:c.70_462del		p.X24_splice	ENST00000349496	NM_001904.3	24	agTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGTGCAATCCCt/agt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125500	47125500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0052041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	34	445	1	ENST00000409792.3:c.5770C>T	p.Gln1924Ter	p.Q1924*	ENST00000409792	NM_014159.6	1924	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0052041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	41	520	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983328	149983328	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	58	479	0	ENST00000253339.5:c.2930T>G	p.Leu977Arg	p.L977R	ENST00000253339		977	cTc/cGc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0052043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	19	372	2	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0052043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	71	416	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082317	16082317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	85	862	1	ENST00000281043.3:c.131C>T	p.Pro44Leu	p.P44L	ENST00000281043	NM_005378.4	44	cCc/cTc																																																																															
RET	5979	MSKCC	GRCh37	10	43598018	43598018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	40	777	0	ENST00000355710.3:c.566G>A	p.Arg189His	p.R189H	ENST00000355710	NM_020975.4	189	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0052043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	30	576	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	27	347	0	ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222475	2222475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200919682		P-0052043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	33	674	2	ENST00000398665.3:c.3307G>A	p.Val1103Met	p.V1103M	ENST00000398665	NM_032482.2	1103	Gtg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0052043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	32	691	3	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	53	885	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421848	49421848	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0052043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	135	853	1	ENST00000301067.7:c.14459del	p.Pro4820GlnfsTer38	p.P4820Qfs*38	ENST00000301067	NM_003482.3	4820	cCa/ca																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321298	1321298	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757079410		P-0052043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	50	463	0	ENST00000381566.1:c.457C>T	p.Arg153Trp	p.R153W	ENST00000381566		153	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108142022	108142023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0052043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	81	481	0	ENST00000278616.4:c.2967dup	p.Ile990TyrfsTer20	p.I990Yfs*20	ENST00000278616	NM_000051.3	989	act/acTt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2224309	2224309	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0052043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	32	768	0	ENST00000326181.6:c.1321A>T	p.Ile441Phe	p.I441F	ENST00000326181	NM_032271.2	441	Atc/Ttc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26022385	26022385	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	30	399	0	ENST00000435504.4:c.272T>C	p.Val91Ala	p.V91A	ENST00000435504		91	gTg/gCg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170009639	170009642	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGG	AAGG	-			P-0052043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	33	334	0	ENST00000295797.4:c.1206_1209del		p.X402_splice	ENST00000295797	NM_002740.5	402																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0026772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	96	529	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0026772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	202	464	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26923211	26923211	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0026772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	123	213	0	ENST00000381527.3:c.207A>C	p.Leu69Phe	p.L69F	ENST00000381527	NM_001260.1	69	ttA/ttC																																																																															
PALB2	79728	MSKCC	GRCh37	16	23634343	23634343	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	343	629	0	ENST00000261584.4:c.2943del	p.Ser981ArgfsTer9	p.S981Rfs*9	ENST00000261584	NM_024675.3	981	agT/ag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214586	5214586	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	194	556	0	ENST00000357368.4:c.4480G>T	p.Glu1494Ter	p.E1494*	ENST00000357368	NM_002850.3	1494	Gag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41408896	41408896	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	197	477	0	ENST00000373198.4:c.530T>A	p.Ile177Asn	p.I177N	ENST00000373198	NM_133170.3	177	aTc/aAc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294258	1294258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	192	575	0	ENST00000310581.5:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000310581	NM_198253.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175437	112175438	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGTTTAGCAGATGTACTT			P-0026772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	79	228	0	ENST00000257430.4:c.4147_4165dup	p.Ser1389TyrfsTer3	p.S1389Yfs*3	ENST00000257430	NM_000038.5	1382	-/ATGTTTAGCAGATGTACTT																																																																															
NBN	4683	MSKCC	GRCh37	8	90976648	90976648	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	27	396	0	ENST00000265433.3:c.984T>A	p.His328Gln	p.H328Q	ENST00000265433	NM_002485.4	328	caT/caA																																																																															
MED12	9968	MSKCC	GRCh37	X	70339575	70339575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	310	543	0	ENST00000374080.3:c.244C>T	p.Arg82Cys	p.R82C	ENST00000374080		82	Cgt/Tgt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	136	671	2	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																															
INSR	3643	MSKCC	GRCh37	19	7166285	7166285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	58	837	3	ENST00000302850.5:c.1741C>T	p.Arg581Trp	p.R581W	ENST00000302850	NM_000208.2	581	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578496	7578497	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			P-0034302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	128	1113	0	ENST00000269305.4:c.431_433dup	p.Gln144dup	p.Q144dup	ENST00000269305	NM_001126112.2	144	ctg/cAGCtg																																																																															
APC	324	MSKCC	GRCh37	5	112174968	112174969	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0034302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	36	269	0	ENST00000257430.4:c.3679_3680del	p.Arg1227AlafsTer12	p.R1227Afs*12	ENST00000257430	NM_000038.5	1226	aAG/a																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020775	37020775	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	42	596	0	ENST00000358127.4:c.70G>T	p.Gly24Trp	p.G24W	ENST00000358127	NM_001280556.1	24	Ggg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	6	449	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435675	56435675	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	7	618	0	ENST00000407977.2:c.1462C>T	p.Gln488Ter	p.Q488*	ENST00000407977		488	Cag/Tag																																																																															
JUN	3725	MSKCC	GRCh37	1	59247826	59247827	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAC			P-0051850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	14	744	0	ENST00000371222.2:c.913_916dup	p.Ala306GlyfsTer5	p.A306Gfs*5	ENST00000371222	NM_002228.3	306	gca/gGTGGca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435683	56435683	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	11	612	0	ENST00000407977.2:c.1454T>G	p.Ile485Ser	p.I485S	ENST00000407977		485	aTc/aGc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715620	30715621	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0051850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	14	311	0	ENST00000359013.4:c.1355dup	p.Glu453ArgfsTer13	p.E453Rfs*13	ENST00000359013	NM_001024847.2	451	-/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	139	345	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0051865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	34	256	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0051865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	69	238	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0051865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	66	283	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
IL10	3586	MSKCC	GRCh37	1	206944260	206944260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	23	339	0	ENST00000423557.1:c.370C>T	p.Arg124Trp	p.R124W	ENST00000423557	NM_000572.2	124	Cgg/Tgg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139760	55139760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	58	514	1	ENST00000257290.5:c.1421C>T	p.Thr474Met	p.T474M	ENST00000257290	NM_006206.4	474	aCg/aTg																																																																															
RB1	5925	MSKCC	GRCh37	13	49039456	49039456	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	77	315	0	ENST00000267163.4:c.2441A>G	p.Lys814Arg	p.K814R	ENST00000267163	NM_000321.2	814	aAa/aGa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43720320	43720320	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0051865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	323	526	0	ENST00000382044.4:c.3722T>A	p.Leu1241Ter	p.L1241*	ENST00000382044	NM_001141980.1	1241	tTa/tAa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119891	70119891	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0051865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	139	484	0	ENST00000245479.2:c.893del	p.Leu298ArgfsTer85	p.L298Rfs*85	ENST00000245479	NM_000346.3	298	cTg/cg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119930	70119930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	44	416	0	ENST00000245479.2:c.932G>T	p.Gly311Val	p.G311V	ENST00000245479	NM_000346.3	311	gGc/gTc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561018	9561018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	51	409	0	ENST00000353224.5:c.764G>A	p.Ser255Asn	p.S255N	ENST00000353224	NM_177990.2	255	aGt/aAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713910	30713910	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	80	436	0	ENST00000359013.4:c.1310A>G	p.Asp437Gly	p.D437G	ENST00000359013	NM_001024847.2	437	gAc/gGc																																																																															
ATRX	546	MSKCC	GRCh37	X	76907813	76907813	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	22	194	0	ENST00000373344.5:c.4348G>T	p.Glu1450Ter	p.E1450*	ENST00000373344	NM_000489.3	1450	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0051866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	245	363	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0051866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	229	443	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579310	7579310	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0051866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	282	470	0	ENST00000269305.4:c.375+2T>G		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44966768	44966768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	237	209	0	ENST00000377967.4:c.3992G>A	p.Cys1331Tyr	p.C1331Y	ENST00000377967	NM_021140.2	1331	tGt/tAt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95574366	95574366	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	352	207	0	ENST00000343455.3:c.2501C>A	p.Ser834Tyr	p.S834Y	ENST00000343455	NM_177438.2	834	tCt/tAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0051870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	192	324	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223967	36223967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	73	676	0	ENST00000222270.7:c.6517C>T	p.Arg2173Trp	p.R2173W	ENST00000222270	NM_014727.1	2173	Cgg/Tgg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376437	118376437	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	86	350	0	ENST00000534358.1:c.9830T>G	p.Leu3277Arg	p.L3277R	ENST00000534358	NM_005933.3	3277	cTt/cGt																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031743	26032022	+	coding_sequence_variant,3_prime_UTR_variant	Frame_Shift_Del	DEL	GCTTTCCGGGGGGGTCCTTAGAAATTTGTTCTGTTAAGACAACAAAAAATTATCACAGCTACTTTCGTTGGAATAAGTGGGTGGCTCTGAAAAGAGCCTTTGGGTTTTAAGACTGATGAAAAAGTGACTTTACATTTACGCTCTTTCTCCGCGAATGCGGCGAGCGAGCTGGATGTCTTTGGGCATAATAGTCACTCGCTTAGCATGGATGGCGCAAAGGTTTGTGTCCTCAAAGAGCCCTACCAAGTAGGCCTCACAAGCCTCCTGCAGCGCCATCACC	GCTTTCCGGGGGGGTCCTTAGAAATTTGTTCTGTTAAGACAACAAAAAATTATCACAGCTACTTTCGTTGGAATAAGTGGGTGGCTCTGAAAAGAGCCTTTGGGTTTTAAGACTGATGAAAAAGTGACTTTACATTTACGCTCTTTCTCCGCGAATGCGGCGAGCGAGCTGGATGTCTTTGGGCATAATAGTCACTCGCTTAGCATGGATGGCGCAAAGGTTTGTGTCCTCAAAGAGCCCTACCAAGTAGGCCTCACAAGCCTCCTGCAGCGCCATCACC	-			P-0051870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	47	35	0				ENST00000244661	NM_003537.3	89		1-Jan																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929266	44929266	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	97	267	0	ENST00000377967.4:c.2366A>G	p.Asn789Ser	p.N789S	ENST00000377967	NM_021140.2	789	aAt/aGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0051996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	53	394	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68849442	68849453	+	inframe_deletion	In_Frame_Del	DEL	CAGTACATTCTA	CAGTACATTCTA	-			P-0051996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	73	596	0	ENST00000261769.5:c.1347_1358del	p.Gln449_Leu452del	p.Q449_L452del	ENST00000261769	NM_004360.3	449	CAGTACATTCTA/-																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0051997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	59	419	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998891	11998891	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0051997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	35	226	0	ENST00000353533.5:c.394-1del		p.X132_splice	ENST00000353533	NM_003010.3	132																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	101	463	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	54	435	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0051998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	54	498	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793663		P-0051998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	113	561	1	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730008	41730008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	72	630	0	ENST00000242208.4:c.521G>A	p.Arg174His	p.R174H	ENST00000242208	NM_002192.2	174	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584605	48584606	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0051998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	36	479	0	ENST00000342988.3:c.779dup	p.Tyr260Ter	p.Y260*	ENST00000342988	NM_005359.5	260	tac/tAac																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937896	36937896	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0051998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	86	821	0	ENST00000361632.4:c.940del	p.Leu314CysfsTer14	p.L314Cfs*14	ENST00000361632		314	Ctg/tg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492877	56492877	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	44	366	0	ENST00000407977.2:c.62T>A	p.Leu21Gln	p.L21Q	ENST00000407977		21	cTg/cAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0051999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	39	356	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624302	89624302	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	248	626	0	ENST00000371953.3:c.76A>C	p.Thr26Pro	p.T26P	ENST00000371953	NM_000314.4	26	Acc/Ccc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521061	187521061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	135	459	0	ENST00000441802.2:c.12094C>T	p.Pro4032Ser	p.P4032S	ENST00000441802	NM_005245.3	4032	Cct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0030822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	75	731	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
SYK	6850	MSKCC	GRCh37	9	93637076	93637076	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	51	528	0	ENST00000375746.1:c.1126G>T	p.Glu376Ter	p.E376*	ENST00000375746	NM_001174167.1	376	Gaa/Taa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47144877	47144877	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	75	581	0	ENST00000409792.3:c.4876T>G	p.Phe1626Val	p.F1626V	ENST00000409792	NM_014159.6	1626	Ttc/Gtc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166584	118166584	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	50	383	0	ENST00000369448.3:c.1094A>T	p.Asp365Val	p.D365V	ENST00000369448	NM_017709.3	365	gAt/gTt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885526	111885526	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199694759		P-0030822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	82	769	1	ENST00000341259.2:c.1303G>A	p.Val435Met	p.V435M	ENST00000341259	NM_005475.2	435	Gtg/Atg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86665641	86665671	+	frameshift_variant	Frame_Shift_Del	DEL	TTCAGATAGTAGTTCAGCACTTTAGTGAAGA	TTCAGATAGTAGTTCAGCACTTTAGTGAAGA	-			P-0030822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	30	307	0	ENST00000274376.6:c.1622_1652del	p.Phe541TyrfsTer19	p.F541Yfs*19	ENST00000274376	NM_002890.2	541	tTTCAGATAGTAGTTCAGCACTTTAGTGAAGAa/ta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0051284-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			129	113	362	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0051284-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			182	15	440	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001410	29001410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	41	316	0	ENST00000282397.4:c.1322C>T	p.Pro441Leu	p.P441L	ENST00000282397	NM_002019.4	441	cCg/cTg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18272263	18272263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	10	18	0	ENST00000222254.8:c.773C>T	p.Pro258Leu	p.P258L	ENST00000222254	NM_005027.3	258	cCg/cTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111491	8111492	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACTCTGG			P-0051746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	164	543	0	ENST00000346208.3:c.979_985dup	p.Arg329ThrfsTer25	p.R329Tfs*25	ENST00000346208		326	aca/acACTCTGGa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63537676	63537676	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0051746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	36	440	0	ENST00000307078.5:c.957-1G>A		p.X319_splice	ENST00000307078	NM_004655.3	319																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0051764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	175	490	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
EED	8726	MSKCC	GRCh37	11	85968567	85968567	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	93	314	0	ENST00000263360.6:c.563G>T	p.Gly188Val	p.G188V	ENST00000263360	NM_003797.3	188	gGc/gTc																																																																															
SDHA	6389	MSKCC	GRCh37	5	233727	233727	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2247	244	666	0	ENST00000264932.6:c.1031C>G	p.Ser344Cys	p.S344C	ENST00000264932	NM_004168.2	344	tCt/tGt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11308017	11308017	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	97	730	0	ENST00000361445.4:c.975G>C	p.Gln325His	p.Q325H	ENST00000361445	NM_004958.3	325	caG/caC																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78422307	78422308	+	frameshift_variant	Frame_Shift_Ins	INS	GG	GG	AGTGGC			P-0051765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	104	495	0	ENST00000370768.2:c.1654_1655delinsGCCACT	p.Pro552AlafsTer16	p.P552Afs*16	ENST00000370768	NM_003902.3	552	CCa/GCCACTa																																																																															
WT1	7490	MSKCC	GRCh37	11	32456472	32456472	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	114	415	0	ENST00000332351.3:c.420C>G	p.Ile140Met	p.I140M	ENST00000332351	NM_024426.4	140	atC/atG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0051765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	20	533	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434673	110434673	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	111	854	0	ENST00000375856.3:c.3728C>G	p.Thr1243Ser	p.T1243S	ENST00000375856	NM_003749.2	1243	aCc/aGc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23640569	23640569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	211	678	1	ENST00000261584.4:c.2542G>A	p.Asp848Asn	p.D848N	ENST00000261584	NM_024675.3	848	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0051765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	254	794	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29560172	29560172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	131	415	0	ENST00000358273.4:c.3649G>T	p.Asp1217Tyr	p.D1217Y	ENST00000358273	NM_001042492.2	1217	Gat/Tat																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40461480	40461480	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1215	276	1213	2	ENST00000345506.4:c.2200C>A	p.Pro734Thr	p.P734T	ENST00000345506	NM_003152.3	734	Ccc/Acc																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17384932	17384932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	248	869	0	ENST00000359435.4:c.482C>T	p.Ser161Phe	p.S161F	ENST00000359435	NM_001033549.1	161	tCc/tTc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17954591	17954591	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	253	915	0	ENST00000458235.1:c.303G>C	p.Arg101Ser	p.R101S	ENST00000458235	NM_000215.3	101	agG/agC																																																																															
CIC	23152	MSKCC	GRCh37	19	42791797	42791797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1092	96	849	1	ENST00000575354.2:c.683G>A	p.Arg228Gln	p.R228Q	ENST00000575354	NM_015125.3	228	cGg/cAg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716298	52716298	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	207	768	0	ENST00000322088.6:c.742C>G	p.Leu248Val	p.L248V	ENST00000322088	NM_014225.5	248	Ctg/Gtg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659982	227659982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	108	815	0	ENST00000305123.5:c.3473G>A	p.Gly1158Glu	p.G1158E	ENST00000305123	NM_005544.2	1158	gGa/gAa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680584	30680584	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	201	654	0	ENST00000376406.3:c.1135G>C	p.Asp379His	p.D379H	ENST00000376406	NM_014641.2	379	Gat/Cat																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683777	162683777	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	127	495	0	ENST00000366898.1:c.192G>C	p.Gln64His	p.Q64H	ENST00000366898	NM_004562.2	64	caG/caC																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8633439	8633440	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0051765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	123	456	1	ENST00000356435.5:c.229_230delinsTT	p.Gly77Leu	p.G77L	ENST00000356435		77	GGg/TTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	157	378	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	242	734	0	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa																																																																															
KIT	3815	MSKCC	GRCh37	4	55561764	55561764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	71	337	0	ENST00000288135.5:c.154G>A	p.Asp52Asn	p.D52N	ENST00000288135	NM_000222.2	52	Gac/Aac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0051777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	139	409	0	ENST00000304494.5:c.151-1G>C		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912654		P-0051777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	281	799	1	ENST00000269305.4:c.469G>A	p.Val157Ile	p.V157I	ENST00000269305	NM_001126112.2	157	Gtc/Atc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37090395	37090395	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0051777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	60	405	0	ENST00000231790.2:c.1990G>A	p.Val664Met	p.V664M	ENST00000231790	NM_000249.3	664	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0051782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	984	352	5	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0051782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	258	458	2	ENST00000304494.5:c.172del	p.Arg58GlufsTer88	p.R58Efs*88	ENST00000304494	NM_000077.4	58	Cga/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7576899	7576900	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0051782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	640	650	2	ENST00000269305.4:c.946_947insT	p.Pro316LeufsTer21	p.P316Lfs*21	ENST00000269305	NM_001126112.2	316	ccc/cTcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432495	49432495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	630	610	3	ENST00000301067.7:c.8644C>T	p.His2882Tyr	p.H2882Y	ENST00000301067	NM_003482.3	2882	Cac/Tac																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347363	89347363	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	478	674	1	ENST00000301030.4:c.5587G>T	p.Asp1863Tyr	p.D1863Y	ENST00000301030	NM_001256183.1	1863	Gac/Tac																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0051784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	149	384	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425056	49425056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	79	785	2	ENST00000301067.7:c.13432C>T	p.Arg4478Trp	p.R4478W	ENST00000301067	NM_003482.3	4478	Cgg/Tgg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164136	47164136	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0051784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	129	320	0	ENST00000409792.3:c.1990A>T	p.Arg664Ter	p.R664*	ENST00000409792	NM_014159.6	664	Aga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593422	48593423	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0051784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	38	355	0	ENST00000342988.3:c.1176dup	p.Gly393ArgfsTer2	p.G393Rfs*2	ENST00000342988	NM_005359.5	391	-/A																																																																															
SETD2	29072	MSKCC	GRCh37	3	47084124	47084124	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0051784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	174	574	0	ENST00000409792.3:c.7165del	p.Ile2389LeufsTer22	p.I2389Lfs*22	ENST00000409792	NM_014159.6	2389	Att/tt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099929	157099929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	165	545	0	ENST00000346085.5:c.866G>A	p.Gly289Glu	p.G289E	ENST00000346085	NM_020732.3	289	gGg/gAg																																																																															
CIC	23152	MSKCC	GRCh37	19	42799176	42799176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	73	665	1	ENST00000575354.2:c.4660G>A	p.Ala1554Thr	p.A1554T	ENST00000575354	NM_015125.3	1554	Gca/Aca																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	213	590	2	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0051843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	269	562	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
MAP2K4	6416	MSKCC	GRCh37	17	12028670	12028670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	155	448	0	ENST00000353533.5:c.873G>T	p.Trp291Cys	p.W291C	ENST00000353533	NM_003010.3	291	tgG/tgT																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156834585	156834585	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	243	797	0	ENST00000524377.1:c.353G>T	p.Ser118Ile	p.S118I	ENST00000524377	NM_002529.3	118	aGt/aTt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94201060	94201060	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0051843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	55	249	0	ENST00000323929.3:c.1018-1G>C		p.X340_splice	ENST00000323929	NM_005591.3	340																																																																																
GSK3B	2932	MSKCC	GRCh37	3	119812256	119812256	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	81	438	1	ENST00000316626.5:c.26C>A	p.Ser9Tyr	p.S9Y	ENST00000316626		9	tCc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0051844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	148	613	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	148	527	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549504	21549504	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0051844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	180	461	0	ENST00000382592.4:c.2773-1G>T		p.X925_splice	ENST00000382592	NM_014572.2	925																																																																																
SPEN	23013	MSKCC	GRCh37	1	16257617	16257617	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	171	455	0	ENST00000375759.3:c.4882G>C	p.Asp1628His	p.D1628H	ENST00000375759	NM_015001.2	1628	Gat/Cat																																																																															
CCND1	595	MSKCC	GRCh37	11	69462825	69462825	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	175	688	0	ENST00000227507.2:c.638A>G	p.Gln213Arg	p.Q213R	ENST00000227507	NM_053056.2	213	cAa/cGa																																																																															
ATM	472	MSKCC	GRCh37	11	108199955	108199955	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	68	226	0	ENST00000278616.4:c.7297C>G	p.Gln2433Glu	p.Q2433E	ENST00000278616	NM_000051.3	2433	Cag/Gag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118365018	118365018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	97	356	0	ENST00000534358.1:c.5194G>A	p.Asp1732Asn	p.D1732N	ENST00000534358	NM_005933.3	1732	Gat/Aat																																																																															
MGA	23269	MSKCC	GRCh37	15	42021360	42021360	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0051844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	133	271	0	ENST00000219905.7:c.3658-2A>G		p.X1220_splice	ENST00000219905	NM_001164273.1	1220																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36229049	36229049	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	273	706	0	ENST00000222270.7:c.7829G>T	p.Arg2610Leu	p.R2610L	ENST00000222270	NM_014727.1	2610	cGc/cTc																																																																															
BARD1	580	MSKCC	GRCh37	2	215645769	215645769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	83	479	0	ENST00000260947.4:c.829G>A	p.Glu277Lys	p.E277K	ENST00000260947	NM_000465.2	277	Gaa/Aaa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683739	162683739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	188	598	0	ENST00000366898.1:c.230G>T	p.Gly77Val	p.G77V	ENST00000366898	NM_004562.2	77	gGt/gTt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141567278	141567278	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	316	627	0	ENST00000220592.5:c.936C>G	p.Phe312Leu	p.F312L	ENST00000220592	NM_012154.3	312	ttC/ttG																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87359948	87359949	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0051844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	123	382	0	ENST00000277120.3:c.1256_1257insA	p.Thr420HisfsTer5	p.T420Hfs*5	ENST00000277120		419	tcc/tcAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	16	457	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0051846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	20	649	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0051848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	49	466	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43745244	43745244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	289	834	0	ENST00000523873.1:c.157C>T	p.His53Tyr	p.H53Y	ENST00000523873		53	Cat/Tat																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0051848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	236	555	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151845153	151845154	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0051848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	235	700	0	ENST00000262189.6:c.13858dup	p.His4620ProfsTer2	p.H4620Pfs*2	ENST00000262189	NM_170606.2	4620	cat/cCat																																																																															
CBFB	865	MSKCC	GRCh37	16	67063632	67063635	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TAAG	TAAG	-			P-0051848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	168	342	0	ENST00000412916.2:c.83_86del	p.Lys28ThrfsTer60	p.K28Tfs*60	ENST00000412916		27	atTAAG/at																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44913109	44913109	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0051848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	16	658	0	ENST00000377967.4:c.784A>T	p.Lys262Ter	p.K262*	ENST00000377967	NM_021140.2	262	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	162	667	1	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs483352822		P-0051852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	196	536	0	ENST00000368323.3:c.270G>A	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atA																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602583	10602583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	186	856	0	ENST00000171111.5:c.995G>A	p.Gly332Asp	p.G332D	ENST00000171111	NM_203500.1	332	gGc/gAc																																																																															
TERT	7015	MSKCC	GRCh37	5	1293661	1293661	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	102	872	0	ENST00000310581.5:c.1340G>T	p.Arg447Leu	p.R447L	ENST00000310581	NM_198253.2	447	cGc/cTc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589776	28589776	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	56	515	0	ENST00000241453.7:c.2604G>C	p.Lys868Asn	p.K868N	ENST00000241453	NM_004119.2	868	aaG/aaC																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88670455	88670456	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	A			P-0051852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	33	328	0	ENST00000360948.2:c.1230dup	p.Asp411Ter	p.D411*	ENST00000360948	NM_001012338.2	410	-/T																																																																															
ALK	238	MSKCC	GRCh37	2	29446266	29446266	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	99	685	0	ENST00000389048.3:c.3301A>C	p.Lys1101Gln	p.K1101Q	ENST00000389048	NM_004304.4	1101	Aag/Cag																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919763	96919763	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	58	557	0	ENST00000258439.3:c.500C>A	p.Ser167Tyr	p.S167Y	ENST00000258439	NM_001193304.2	167	tCc/tAc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067156	37067156	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	71	299	0	ENST00000231790.2:c.1067C>G	p.Ser356Cys	p.S356C	ENST00000231790	NM_000249.3	356	tCt/tGt																																																																															
KDR	3791	MSKCC	GRCh37	4	55964932	55964932	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	65	367	0	ENST00000263923.4:c.2305G>T	p.Val769Leu	p.V769L	ENST00000263923	NM_002253.2	769	Gta/Tta																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149505090	149505090	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	138	659	0	ENST00000261799.4:c.1725C>A	p.Asp575Glu	p.D575E	ENST00000261799	NM_002609.3	575	gaC/gaA																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553584	106553584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	63	469	0	ENST00000369096.4:c.1549C>T	p.Pro517Ser	p.P517S	ENST00000369096	NM_001198.3	517	Ccc/Tcc																																																																															
HGF	3082	MSKCC	GRCh37	7	81386583	81386583	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	67	507	0	ENST00000222390.5:c.404G>C	p.Ser135Thr	p.S135T	ENST00000222390	NM_000601.4	135	aGc/aCc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117875391	117875391	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	88	385	0	ENST00000297338.2:c.252G>C	p.Lys84Asn	p.K84N	ENST00000297338	NM_006265.2	84	aaG/aaC																																																																															
STAG2	10735	MSKCC	GRCh37	X	123220421	123220421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	137	509	0	ENST00000218089.9:c.3078G>T	p.Met1026Ile	p.M1026I	ENST00000218089	NM_001042749.1	1026	atG/atT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0051853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	56	496	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579356	7579359	+	frameshift_variant	Frame_Shift_Del	DEL	GACG	GACG	-			P-0051853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	100	786	0	ENST00000269305.4:c.328_331delCGTC	p.Arg110TrpfsTer12	p.R110Wfs*12	ENST00000269305	NM_001126112.2	110	CGTCtg/tg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974809	21974809	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	21	140	0	ENST00000304494.5:c.18del	p.Ser7AlafsTer19	p.S7Afs*19	ENST00000304494	NM_000077.4	6	ggG/gg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226980	2226980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	74	514	0	ENST00000398665.3:c.4460C>T	p.Ser1487Phe	p.S1487F	ENST00000398665	NM_032482.2	1487	tCc/tTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603038	48603039	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGCAGCAGCAGGCGGCTACTGCACAAGC			P-0051853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	38	430	0	ENST00000342988.3:c.1349_1376dup	p.Ala460GlyfsTer43	p.A460Gfs*43	ENST00000342988	NM_005359.5	447	atg/aTGCAGCAGCAGGCGGCTACTGCACAAGCtg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221340	1221340	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0051854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	112	635	1	ENST00000326873.7:c.862+1G>A		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																																
AURKB	9212	MSKCC	GRCh37	17	8110208	8110208	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0051854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	139	636	0	ENST00000585124.1:c.399-2A>T		p.X133_splice	ENST00000585124	NM_004217.3	133																																																																																
CDK12	51755	MSKCC	GRCh37	17	37619332	37619332	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	116	552	0	ENST00000447079.4:c.1009del	p.Leu337Ter	p.L337*	ENST00000447079	NM_015083.1	336	ttC/tt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600364	10600364	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	174	745	0	ENST00000171111.5:c.1491G>T	p.Trp497Cys	p.W497C	ENST00000171111	NM_203500.1	497	tgG/tgT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057268	180057268	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	139	806	1	ENST00000261937.6:c.470C>A	p.Pro157His	p.P157H	ENST00000261937	NM_182925.4	157	cCc/cAc																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23539098	23539098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	30	475	0	ENST00000380871.4:c.341C>T	p.Pro114Leu	p.P114L	ENST00000380871	NM_006167.3	114	cCa/cTa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	223	337	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0051867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	391	659	3	ENST00000269305.4:c.949delC	p.Gln317SerfsTer28	p.Q317Sfs*28	ENST00000269305	NM_001126112.2	317	Cag/ag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961847	15961847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	192	503	1	ENST00000268712.3:c.5948C>T	p.Ala1983Val	p.A1983V	ENST00000268712	NM_006311.3	1983	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446848	49446848	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	273	538	0	ENST00000301067.7:c.962G>C	p.Arg321Pro	p.R321P	ENST00000301067	NM_003482.3	321	cGg/cCg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26959357	26959357	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	42	336	0	ENST00000381527.3:c.524G>C	p.Gly175Ala	p.G175A	ENST00000381527	NM_001260.1	175	gGc/gCc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562591	95562591	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	63	370	0	ENST00000343455.3:c.4666G>C	p.Asp1556His	p.D1556H	ENST00000343455	NM_177438.2	1556	Gac/Cac																																																																															
CTCF	10664	MSKCC	GRCh37	16	67670716	67670716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	213	531	0	ENST00000264010.4:c.1961G>A	p.Arg654Gln	p.R654Q	ENST00000264010	NM_006565.3	654	cGa/cAa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375489	15375489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	401	654	0	ENST00000263377.2:c.938C>A	p.Pro313His	p.P313H	ENST00000263377	NM_058243.2	313	cCc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306544	41306544	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	303	486	1	ENST00000373198.4:c.1115C>A	p.Pro372Gln	p.P372Q	ENST00000373198	NM_133170.3	372	cCg/cAg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12421274	12421274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	83	615	0	ENST00000287820.6:c.154G>T	p.Val52Leu	p.V52L	ENST00000287820	NM_015869.4	52	Gta/Tta																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271483	26271483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	124	658	0	ENST00000305910.3:c.130C>A	p.Pro44Thr	p.P44T	ENST00000305910	NM_003534.2	44	Ccc/Acc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729888	41729888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	109	509	0	ENST00000242208.4:c.641G>T	p.Arg214Leu	p.R214L	ENST00000242208	NM_002192.2	214	cGg/cTg																																																																															
SYK	6850	MSKCC	GRCh37	9	93624526	93624526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	139	481	0	ENST00000375746.1:c.617G>T	p.Cys206Phe	p.C206F	ENST00000375746	NM_001174167.1	206	tGc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579559	7579559	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046558-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			522	48	690	0	ENST00000269305.4:c.128delT	p.Leu43Ter	p.L43*	ENST00000269305	NM_001126112.2	43	tTg/tg																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046558-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			382	37	481	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112380	115112380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046558-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			333	26	444	0	ENST00000257566.3:c.1360C>T	p.Arg454Cys	p.R454C	ENST00000257566	NM_016569.3	454	Cgc/Tgc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46597039	46597039	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046558-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			413	24	416	0	ENST00000263734.3:c.853G>C	p.Asp285His	p.D285H	ENST00000263734	NM_001430.4	285	Gac/Cac																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271480	26271480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046558-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			499	101	619	0	ENST00000305910.3:c.133G>A	p.Gly45Ser	p.G45S	ENST00000305910	NM_003534.2	45	Ggc/Agc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030599	47030599	+	intron_variant	Intron	SNP	A	A	G			P-0046558-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			481	33	735	0	ENST00000329236.7:c.201+1702A>G		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0050855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	176	666	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351864	89351864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	89	700	0	ENST00000301030.4:c.1086C>A	p.Asp362Glu	p.D362E	ENST00000301030	NM_001256183.1	362	gaC/gaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	129	762	1	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																															
RET	5979	MSKCC	GRCh37	10	43615168	43615168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	67	594	0	ENST00000355710.3:c.2582G>A	p.Gly861Glu	p.G861E	ENST00000355710	NM_020975.4	861	gGg/gAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828612	72828615	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0051179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	41	689	1	ENST00000268489.5:c.7966_7969del	p.Leu2656ThrfsTer24	p.L2656Tfs*24	ENST00000268489	NM_006885.3	2656	CTCTac/ac																																																																															
BCL2	596	MSKCC	GRCh37	18	60795898	60795898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	55	569	0	ENST00000333681.4:c.680G>A	p.Gly227Glu	p.G227E	ENST00000333681		227	gGa/gAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222979	36222979	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	33	868	0	ENST00000222270.7:c.5608T>C	p.Tyr1870His	p.Y1870H	ENST00000222270	NM_014727.1	1870	Tac/Cac																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84391524	84391524	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200068246		P-0051179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	20	401	0	ENST00000321945.7:c.308G>A	p.Arg103His	p.R103H	ENST00000321945	NM_139076.2	103	cGt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0051281-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			462	646	460	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0051281-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			615	223	571	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96920691	96920691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051281-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			696	87	405	2	ENST00000258439.3:c.289G>A	p.Ala97Thr	p.A97T	ENST00000258439	NM_001193304.2	97	Gcc/Acc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519972		P-0051589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	116	457	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445005	89445005	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112239794		P-0051589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	45	388	0	ENST00000336596.2:c.1325C>T	p.Thr442Met	p.T442M	ENST00000336596	NM_005233.5	442	aCg/aTg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5070053	5070054	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0051589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	16	282	0	ENST00000381652.3:c.1641+2dup		p.X547_splice	ENST00000381652	NM_004972.3	547																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0051799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	129	366	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0051799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	163	461	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0051799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	73	431	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0051799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	43	282	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	45	703	1	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527783	103527783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	25	346	0	ENST00000355739.4:c.3091G>A	p.Ala1031Thr	p.A1031T	ENST00000355739	NM_000123.3	1031	Gcc/Acc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353903	15353903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	48	584	1	ENST00000263377.2:c.2977C>T	p.Pro993Ser	p.P993S	ENST00000263377	NM_058243.2	993	Cct/Tct																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981851	201981852	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0051799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	228	842	0	ENST00000359651.3:c.566_567dup	p.Ser190ProfsTer65	p.S190Pfs*65	ENST00000359651		188	gcc/gCCcc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120517	70120521	+	frameshift_variant	Frame_Shift_Del	DEL	ACTCG	ACTCG	-			P-0051799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	157	770	0	ENST00000245479.2:c.1521_1525del	p.Arg508LeufsTer68	p.R508Lfs*68	ENST00000245479	NM_000346.3	507	ACTCGa/a																																																																															
APC	324	MSKCC	GRCh37	5	112173994	112173994	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0051799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	45	326	0	ENST00000257430.4:c.2704del	p.Glu902LysfsTer14	p.E902Kfs*14	ENST00000257430	NM_000038.5	901	caG/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0051801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	194	845	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951964	178951964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	253	341	0	ENST00000263967.3:c.3019G>C	p.Gly1007Arg	p.G1007R	ENST00000263967	NM_006218.2	1007	Ggc/Cgc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86629108	86629108	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	59	301	0	ENST00000274376.6:c.853C>T	p.Arg285Ter	p.R285*	ENST00000274376	NM_002890.2	285	Cga/Tga																																																																															
AXL	558	MSKCC	GRCh37	19	41727938	41727938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	158	636	0	ENST00000301178.4:c.563C>T	p.Pro188Leu	p.P188L	ENST00000301178	NM_021913.4	188	cCc/cTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259412	16259412	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	93	419	1	ENST00000375759.3:c.6677T>A	p.Ile2226Asn	p.I2226N	ENST00000375759	NM_015001.2	2226	aTt/aAt																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748131	72748131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	116	458	0	ENST00000357731.5:c.47G>T	p.Trp16Leu	p.W16L	ENST00000357731	NM_173808.2	16	tGg/tTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661726	227661726	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	176	635	0	ENST00000305123.5:c.1729G>C	p.Val577Leu	p.V577L	ENST00000305123	NM_005544.2	577	Gtg/Ctg																																																																															
SESN1	27244	MSKCC	GRCh37	6	109314058	109314058	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	55	400	0	ENST00000436639.2:c.1165G>C	p.Glu389Gln	p.E389Q	ENST00000436639	NM_014454.2	389	Gag/Cag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0051316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	218	471	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0051316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	107	213	0	ENST00000412916.2:c.165+1G>C		p.X55_splice	ENST00000412916		55																																																																																
GATA3	2625	MSKCC	GRCh37	10	8115718	8115719	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0051316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	150	275	0	ENST00000346208.3:c.1066_1067dup	p.Met356IlefsTer2	p.M356Ifs*2	ENST00000346208		355	act/acTAt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118851	115118851	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0051316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	229	338	1	ENST00000257566.3:c.490A>T	p.Lys164Ter	p.K164*	ENST00000257566	NM_016569.3	164	Aaa/Taa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120142	70120143	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0051316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	281	222	0	ENST00000245479.2:c.1145_1146dup	p.Thr383Ter	p.T383*	ENST00000245479	NM_000346.3	382	ctg/cTGtg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218464	36218464	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	263	529	1	ENST00000222270.7:c.4243C>T	p.Gln1415Ter	p.Q1415*	ENST00000222270	NM_014727.1	1415	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094483	27094483	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0051752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	49	442	0	ENST00000324856.7:c.3191T>A	p.Leu1064Ter	p.L1064*	ENST00000324856	NM_006015.4	1064	tTg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0051752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	188	493	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436082	49436082	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	150	429	0	ENST00000301067.7:c.5899G>T	p.Gly1967Cys	p.G1967C	ENST00000301067	NM_003482.3	1967	Ggt/Tgt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21555740	21555740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	72	682	1	ENST00000382592.4:c.2530G>A	p.Asp844Asn	p.D844N	ENST00000382592	NM_014572.2	844	Gat/Aat																																																																															
CUL3	8452	MSKCC	GRCh37	2	225368436	225368436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	35	521	0	ENST00000264414.4:c.1310C>T	p.Ala437Val	p.A437V	ENST00000264414	NM_003590.4	437	gCa/gTa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524489	44524489	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	28	330	0	ENST00000291552.4:c.68A>G	p.Lys23Arg	p.K23R	ENST00000291552	NM_006758.2	23	aAa/aGa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0051752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	29	321	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162747	47162747	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	52	485	2	ENST00000409792.3:c.3379C>T	p.Gln1127Ter	p.Q1127*	ENST00000409792	NM_014159.6	1127	Caa/Taa																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72842138	72842138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	125	356	0	ENST00000325599.8:c.1110G>T	p.Gln370His	p.Q370H	ENST00000325599	NM_018130.2	370	caG/caT																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89456448	89456448	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	164	402	0	ENST00000336596.2:c.1624G>C	p.Val542Leu	p.V542L	ENST00000336596	NM_005233.5	542	Gtg/Ctg																																																																															
HGF	3082	MSKCC	GRCh37	7	81359014	81359014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	191	567	0	ENST00000222390.5:c.947C>A	p.Thr316Asn	p.T316N	ENST00000222390	NM_000601.4	316	aCt/aAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040991	47040992	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0051752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	154	762	0	ENST00000329236.7:c.1288dup	p.Tyr430LeufsTer10	p.Y430Lfs*10	ENST00000329236	NM_001204466.1	429	-/T																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0051754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	291	585	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974721	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	191	366	0	ENST00000304494.5:c.106del	p.Ala36ArgfsTer17	p.A36Rfs*17	ENST00000304494	NM_000077.4	36	Gcg/cg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427647	49427647	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0051754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	304	629	0	ENST00000301067.7:c.10841C>G	p.Ser3614Ter	p.S3614*	ENST00000301067	NM_003482.3	3614	tCa/tGa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8338947	8338947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	166	453	0	ENST00000356435.5:c.5354G>A	p.Arg1785Lys	p.R1785K	ENST00000356435		1785	aGg/aAg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65307285	65307285	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0051754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	16	309	0	ENST00000342505.4:c.2404-1G>C		p.X802_splice	ENST00000342505	NM_002227.2	802																																																																																
DDR2	4921	MSKCC	GRCh37	1	162746044	162746044	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	173	372	0	ENST00000367921.3:c.2167A>T	p.Thr723Ser	p.T723S	ENST00000367921	NM_006182.2	723	Aca/Tca																																																																															
NUF2	83540	MSKCC	GRCh37	1	163318864	163318864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	84	378	1	ENST00000271452.3:c.1254G>T	p.Lys418Asn	p.K418N	ENST00000271452	NM_145697.2	418	aaG/aaT																																																																															
FH	2271	MSKCC	GRCh37	1	241675437	241675437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	79	256	0	ENST00000366560.3:c.385G>A	p.Glu129Lys	p.E129K	ENST00000366560	NM_000143.3	129	Gaa/Aaa																																																																															
HRAS	3265	MSKCC	GRCh37	11	532757	532759	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TGG	TGG	-			P-0051754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	306	539	0	ENST00000311189.7:c.451-4_451-2del		p.X151_splice	ENST00000311189		151																																																																																
LMO1	4004	MSKCC	GRCh37	11	8251955	8251955	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	388	701	0	ENST00000335790.3:c.122A>G	p.Asp41Gly	p.D41G	ENST00000335790	NM_002315.2	41	gAc/gGc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557719	21557719	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	328	642	0	ENST00000382592.4:c.2126A>C	p.Gln709Pro	p.Q709P	ENST00000382592	NM_014572.2	709	cAg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0051754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	627	655	0	ENST00000269305.4:c.535del	p.His179MetfsTer68	p.H179Mfs*68	ENST00000269305	NM_001126112.2	179	Cat/at																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581325	48581325	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	165	468	0	ENST00000342988.3:c.629G>T	p.Ser210Ile	p.S210I	ENST00000342988	NM_005359.5	210	aGc/aTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15295256	15295256	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1386	420	731	1	ENST00000263388.2:c.2416C>T	p.Arg806Ter	p.R806*	ENST00000263388	NM_000435.2	806	Cga/Tga																																																																															
TERT	7015	MSKCC	GRCh37	5	1255501	1255501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	288	581	0	ENST00000310581.5:c.3058C>T	p.Pro1020Ser	p.P1020S	ENST00000310581	NM_198253.2	1020	Cca/Tca																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591025	67591025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	104	292	0	ENST00000274335.5:c.1618G>A	p.Asp540Asn	p.D540N	ENST00000274335		540	Gac/Aac																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137524687	137524687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	137	515	0	ENST00000367739.4:c.682A>G	p.Thr228Ala	p.T228A	ENST00000367739	NM_000416.2	228	Act/Gct																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410106	139410106	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	761	726	2	ENST00000277541.6:c.1732G>T	p.Gly578Cys	p.G578C	ENST00000277541	NM_017617.3	578	Ggc/Tgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0051756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	53	213	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0051756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	144	650	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0051758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	155	638	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0051758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	19	509	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0051758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	177	764	0	ENST00000269305.4:c.560-2A>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0016731-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			92	544	727	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0016731-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			372	149	657	2	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0016731-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			191	97	360	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016731-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			274	234	630	1	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15278102	15278102	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143939165		P-0016731-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			464	387	945	0	ENST00000263388.2:c.5320G>A	p.Asp1774Asn	p.D1774N	ENST00000263388	NM_000435.2	1774	Gac/Aac																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514655	103514655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016731-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	176	460	0	ENST00000355739.4:c.1156C>T	p.Arg386Trp	p.R386W	ENST00000355739	NM_000123.3	386	Cgg/Tgg																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39311679	39311679	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016731-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	312	766	0	ENST00000373001.3:c.980A>T	p.Tyr327Phe	p.Y327F	ENST00000373001	NM_022157.3	327	tAt/tTt																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551933	150551933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016731-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	369	536	0	ENST00000369026.2:c.74G>T	p.Ser25Ile	p.S25I	ENST00000369026	NM_021960.4	25	aGc/aTc																																																																															
STK19	8859	MSKCC	GRCh37	6	31939889	31939889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016731-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			657	289	893	2	ENST00000375331.2:c.116C>T	p.Ala39Val	p.A39V	ENST00000375331	NM_004197.1	39	gCc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018942-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			257	293	465	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0018942-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			125	402	589	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0018942-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			96	166	378	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482870	67482870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018942-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			100	287	479	0	ENST00000327367.4:c.1274C>T	p.Ser425Phe	p.S425F	ENST00000327367	NM_005902.3	425	tCt/tTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593466	48593466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018942-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			84	207	397	1	ENST00000342988.3:c.1217C>T	p.Ala406Val	p.A406V	ENST00000342988	NM_005359.5	406	gCg/gTg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479763	67479763	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs140880290		P-0018942-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			88	361	592	0	ENST00000327367.4:c.1070A>G	p.Asn357Ser	p.N357S	ENST00000327367	NM_005902.3	357	aAc/aGc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100085	157100085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018942-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			58	13	38	1	ENST00000346085.5:c.1022C>T	p.Ala341Val	p.A341V	ENST00000346085	NM_020732.3	341	gCg/gTg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37053354	37053355	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0018942-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			422	58	449	0	ENST00000231790.2:c.588+2dup		p.X196_splice	ENST00000231790	NM_000249.3	196																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045007-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			365	99	235	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045007-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			249	41	200	0	ENST00000342988.3:c.1610A>T	p.Asp537Val	p.D537V	ENST00000342988	NM_005359.5	537	gAc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs864622237		P-0045007-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			443	213	348	0	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac																																																																															
CCND3	896	MSKCC	GRCh37	6	41903755	41903755	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0045007-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			641	171	525	1	ENST00000372991.4:c.802A>T	p.Lys268Ter	p.K268*	ENST00000372991	NM_001760.3	268	Aaa/Taa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492797	56492798	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045007-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			444	142	362	0	ENST00000407977.2:c.141dup	p.Ile48TyrfsTer27	p.I48Yfs*27	ENST00000407977		47	-/T																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974754	21974754	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045007-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			287	53	196	0	ENST00000304494.5:c.73del	p.Val25Ter	p.V25*	ENST00000304494	NM_000077.4	25	Gta/ta																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123688	11123688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	55	443	2	ENST00000344626.4:c.2338G>A	p.Glu780Lys	p.E780K	ENST00000344626	NM_003072.3	780	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0045180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	88	640	0	ENST00000269305.4:c.497C>G	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tGa																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400858	72400858	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	24	334	0	ENST00000357731.5:c.313A>G	p.Ile105Val	p.I105V	ENST00000357731	NM_173808.2	105	Ata/Gta																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78896530	78896530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	70	610	0	ENST00000306801.3:c.2527G>T	p.Val843Leu	p.V843L	ENST00000306801	NM_020761.2	843	Gtg/Ttg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	87	296	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0048104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	175	714	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761121	59761121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	302	483	0	ENST00000259008.2:c.3286G>A	p.Glu1096Lys	p.E1096K	ENST00000259008	NM_032043.2	1096	Gaa/Aaa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761169	59761169	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	272	482	1	ENST00000259008.2:c.3238G>C	p.Asp1080His	p.D1080H	ENST00000259008	NM_032043.2	1080	Gat/Cat																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761031	59761031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	281	435	0	ENST00000259008.2:c.3376G>A	p.Glu1126Lys	p.E1126K	ENST00000259008	NM_032043.2	1126	Gaa/Aaa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761073	59761073	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	276	464	0	ENST00000259008.2:c.3334G>C	p.Asp1112His	p.D1112H	ENST00000259008	NM_032043.2	1112	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0049254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	247	573	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967046	18967048	+	inframe_deletion	In_Frame_Del	DEL	GTC	GTC	-			P-0049254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	232	599	2	ENST00000262803.5:c.1764_1766del	p.Ser589del	p.S589del	ENST00000262803	NM_002911.3	587	ctGTCg/ctg																																																																															
TP63	8626	MSKCC	GRCh37	3	189526163	189526163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	49	610	0	ENST00000264731.3:c.427G>A	p.Val143Ile	p.V143I	ENST00000264731	NM_003722.4	143	Gtc/Atc																																																																															
KDR	3791	MSKCC	GRCh37	4	55956221	55956221	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	67	479	1	ENST00000263923.4:c.3094C>T	p.Arg1032Ter	p.R1032*	ENST00000263923	NM_002253.2	1032	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173268	112173269	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	23	190	0	ENST00000257430.4:c.1979dup	p.Asn660LysfsTer14	p.N660Kfs*14	ENST00000257430	NM_000038.5	659	-/A																																																																															
APC	324	MSKCC	GRCh37	5	112175214	112175216	+	frameshift_variant	Frame_Shift_Ins	INS	AAG	AAG	TAAA			P-0049254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	30	284	0	ENST00000257430.4:c.3923_3925delinsTAAA	p.Lys1308IlefsTer7	p.K1308Ifs*7	ENST00000257430	NM_000038.5	1308	aAAGaa/aTAAAaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0050218-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			514	123	393	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0050218-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	198	539	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115813	8115847	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAG	AAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAG	-			P-0050519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	82	513	0	ENST00000346208.3:c.1160_1194del	p.Lys387ThrfsTer108	p.K387Tfs*108	ENST00000346208		387	AAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGa/a																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519970		P-0050572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	48	498	0	ENST00000347630.2:c.393G>T	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165570	47165571	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	60	557	0	ENST00000409792.3:c.555dup	p.Pro186ThrfsTer51	p.P186Tfs*51	ENST00000409792	NM_014159.6	185	-/A																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0050677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			388	127	489	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004589	16004589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	18	461	0	ENST00000268712.3:c.2665G>A	p.Val889Met	p.V889M	ENST00000268712	NM_006311.3	889	Gtg/Atg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984672	11984672	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0050677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			158	12	286	0	ENST00000353533.5:c.219-1G>C		p.X73_splice	ENST00000353533	NM_003010.3	73																																																																																
CDK8	1024	MSKCC	GRCh37	13	26923272	26923272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			436	23	327	0	ENST00000381527.3:c.268G>A	p.Asp90Asn	p.D90N	ENST00000381527	NM_001260.1	90	Gat/Aat																																																																															
NSD1	64324	MSKCC	GRCh37	5	176678824	176678825	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0050677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			456	33	417	0	ENST00000439151.2:c.4735_4736delinsAA	p.Gly1579Lys	p.G1579K	ENST00000439151	NM_022455.4	1579	GGa/AAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0050725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	161	596	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151880211	151880211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	67	384	4	ENST00000262189.6:c.5113C>T	p.Arg1705Cys	p.R1705C	ENST00000262189	NM_170606.2	1705	Cgc/Tgc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168750	56168753	+	frameshift_variant	Frame_Shift_Del	DEL	AAGA	AAGA	-			P-0050725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	186	378	0	ENST00000399503.3:c.1604_1607del	p.Gln535ArgfsTer21	p.Q535Rfs*21	ENST00000399503	NM_005921.1	535	cAAGAg/cg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0050832-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			631	118	507	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0050832-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			335	74	331	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259439	55259439	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs397517126		P-0050832-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			500	103	424	0	ENST00000275493.2:c.2497T>G	p.Leu833Val	p.L833V	ENST00000275493	NM_005228.3	833	Ttg/Gtg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0050832-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			365	86	302	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374890	45374890	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050832-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			324	133	416	0	ENST00000262160.6:c.953A>T	p.Asn318Ile	p.N318I	ENST00000262160	NM_005901.5	318	aAt/aTt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100009	30100009	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050832-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			521	156	525	0	ENST00000331968.5:c.1611G>C	p.Gln537His	p.Q537H	ENST00000331968	NM_002742.2	537	caG/caC																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650846	37650846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050832-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			536	109	447	2	ENST00000447079.4:c.2318G>A	p.Arg773His	p.R773H	ENST00000447079	NM_015083.1	773	cGt/cAt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111537	8111550	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	TGGGCTCTACTACA	TGGGCTCTACTACA	GTAG			P-0050842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	242	625	2	ENST00000346208.3:c.1023_1036delinsGTAG	p.Cys341TrpfsTer2	p.C341Wfs*2	ENST00000346208		341	tgTGGGCTCTACTACAag/tgGTAGag																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	347	778	1	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468261	120468261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	269	771	1	ENST00000256646.2:c.4178G>T	p.Arg1393Leu	p.R1393L	ENST00000256646	NM_024408.3	1393	cGc/cTc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845895	156845895	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	69	1009	2	ENST00000524377.1:c.1525G>T	p.Asp509Tyr	p.D509Y	ENST00000524377	NM_002529.3	509	Gac/Tac																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518749	204518749	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	86	319	0	ENST00000367182.3:c.1412G>T	p.Gly471Val	p.G471V	ENST00000367182	NM_001278516.1	471	gGg/gTg																																																																															
FH	2271	MSKCC	GRCh37	1	241682946	241682946	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs187226800		P-0050930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	164	591	0	ENST00000366560.3:c.77C>T	p.Pro26Leu	p.P26L	ENST00000366560	NM_000143.3	26	cCc/cTc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77103486	77103486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	185	348	0	ENST00000356341.3:c.80G>T	p.Gly27Val	p.G27V	ENST00000356341	NM_002576.4	27	gGc/gTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133254220	133254220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	43	611	0	ENST00000320574.5:c.664C>T	p.Arg222Cys	p.R222C	ENST00000320574	NM_006231.2	222	Cgc/Tgc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914626	32914626	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	46	572	0	ENST00000380152.3:c.6134T>C	p.Phe2045Ser	p.F2045S	ENST00000380152		2045	tTt/tCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0050930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	163	712	0	ENST00000269305.4:c.375+1delG		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
NCOR1	9611	MSKCC	GRCh37	17	15960894	15960894	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	29	322	0	ENST00000268712.3:c.6326C>G	p.Ser2109Cys	p.S2109C	ENST00000268712	NM_006311.3	2109	tCt/tGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29576138	29576138	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0050930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	88	393	0	ENST00000358273.4:c.4110+1G>A		p.X1370_splice	ENST00000358273	NM_001042492.2	1370																																																																																
NF1	4763	MSKCC	GRCh37	17	29670033	29670033	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	80	306	0	ENST00000358273.4:c.7069G>T	p.Glu2357Ter	p.E2357*	ENST00000358273	NM_001042492.2	2357	Gag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0050930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	59	629	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600407	10600407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	61	930	0	ENST00000171111.5:c.1448G>A	p.Arg483His	p.R483H	ENST00000171111	NM_203500.1	483	cGc/cAc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728470	190728470	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0050930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	26	293	0	ENST00000441310.2:c.1858T>C	p.Tyr620His	p.Y620H	ENST00000441310	NM_000534.4	620	Tat/Cat																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624783	9624783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	79	464	0	ENST00000353224.5:c.194C>A	p.Ala65Asp	p.A65D	ENST00000353224	NM_177990.2	65	gCt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485013	57485013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	47	391	1	ENST00000371085.3:c.847C>T	p.Arg283Cys	p.R283C	ENST00000371085	NM_000516.4	283	Cgc/Tgc																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186503976	186503977	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	26	260	0	ENST00000323963.5:c.545dup	p.Leu182PhefsTer3	p.L182Ffs*3	ENST00000323963		181	gtt/gTtt																																																																															
TERT	7015	MSKCC	GRCh37	5	1264661	1264661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1249	87	950	1	ENST00000310581.5:c.2701C>T	p.Arg901Trp	p.R901W	ENST00000310581	NM_198253.2	901	Cgg/Tgg																																																																															
HGF	3082	MSKCC	GRCh37	7	81350065	81350065	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	130	329	1	ENST00000222390.5:c.1267C>G	p.His423Asp	p.H423D	ENST00000222390	NM_000601.4	423	Cat/Gat																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410340	63410340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	67	968	1	ENST00000330258.3:c.2827G>T	p.Asp943Tyr	p.D943Y	ENST00000330258	NM_152424.3	943	Gac/Tac																																																																															
AR	367	MSKCC	GRCh37	X	66766412	66766412	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	45	358	0	ENST00000374690.3:c.1424C>G	p.Ala475Gly	p.A475G	ENST00000374690	NM_000044.3	475	gCg/gGg																																																																															
ATRX	546	MSKCC	GRCh37	X	76938241	76938241	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	45	539	0	ENST00000373344.5:c.2507C>G	p.Thr836Ser	p.T836S	ENST00000373344	NM_000489.3	836	aCc/aGc																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858011	152858011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	25	451	0	ENST00000406277.2:c.604G>A	p.Gly202Arg	p.G202R	ENST00000406277	NM_152274.4	202	Gga/Aga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188294	32188295	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0050930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	57	965	5	ENST00000375023.3:c.1046dupG	p.Thr350HisfsTer4	p.T350Hfs*4	ENST00000375023	NM_004557.3	349	ggc/ggGc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0050959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	70	385	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
AR	367	MSKCC	GRCh37	X	66765730	66765730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	83	514	1	ENST00000374690.3:c.742G>T	p.Gly248Cys	p.G248C	ENST00000374690	NM_000044.3	248	Ggc/Tgc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346365	73346365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	49	338	0	ENST00000377767.4:c.1435G>T	p.Asp479Tyr	p.D479Y	ENST00000377767	NM_014953.3	479	Gac/Tac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991727	72991727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	23	196	0	ENST00000268489.5:c.2318C>T	p.Ala773Val	p.A773V	ENST00000268489	NM_006885.3	773	gCg/gTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858567	57858567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	52	686	1	ENST00000228682.2:c.305C>T	p.Ser102Leu	p.S102L	ENST00000228682	NM_005269.2	102	tCa/tTa																																																																															
CBL	867	MSKCC	GRCh37	11	119156016	119156016	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	73	647	0	ENST00000264033.4:c.1681C>G	p.Gln561Glu	p.Q561E	ENST00000264033	NM_005188.3	561	Caa/Gaa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161851	47161851	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	41	368	0	ENST00000409792.3:c.4275G>C	p.Lys1425Asn	p.K1425N	ENST00000409792	NM_014159.6	1425	aaG/aaC																																																																															
MTOR	2475	MSKCC	GRCh37	1	11205059	11205059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	46	586	0	ENST00000361445.4:c.4730C>T	p.Ala1577Val	p.A1577V	ENST00000361445	NM_004958.3	1577	gCg/gTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098594	47098594	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	70	555	0	ENST00000409792.3:c.6680del	p.Pro2227HisfsTer21	p.P2227Hfs*21	ENST00000409792	NM_014159.6	2227	cCa/ca																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161706	47161706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	39	253	0	ENST00000409792.3:c.4420G>A	p.Asp1474Asn	p.D1474N	ENST00000409792	NM_014159.6	1474	Gat/Aat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161742	47161742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	36	310	0	ENST00000409792.3:c.4384G>A	p.Glu1462Lys	p.E1462K	ENST00000409792	NM_014159.6	1462	Gaa/Aaa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161886	47161886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	34	394	0	ENST00000409792.3:c.4240G>A	p.Asp1414Asn	p.D1414N	ENST00000409792	NM_014159.6	1414	Gat/Aat																																																																															
ABL1	25	MSKCC	GRCh37	9	133759388	133759388	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	73	631	0	ENST00000318560.5:c.1711T>G	p.Leu571Val	p.L571V	ENST00000318560	NM_005157.4	571	Ttg/Gtg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692816	89692817	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	134	212	0	ENST00000371953.3:c.301dup	p.Ile101AsnfsTer6	p.I101Nfs*6	ENST00000371953	NM_000314.4	100	-/A																																																																															
ATM	472	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0050961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	14	345	0	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916929	178916937	+	inframe_deletion	In_Frame_Del	DEL	GGCAACCGT	GGCAACCGT	-			P-0050961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	91	338	0	ENST00000263967.3:c.317_325delGCAACCGTG	p.Gly106_Arg108del	p.G106_R108del	ENST00000263967	NM_006218.2	106	GGCAACCGT/-																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151851171	151851191	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGACGCAAAATATAAAGTG	GGTGACGCAAAATATAAAGTG	A			P-0050961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	86	289	0	ENST00000262189.6:c.12180_12200delinsT	p.Thr4061PhefsTer25	p.T4061Ffs*25	ENST00000262189	NM_170606.2	4060	ggCACTTTATATTTTGCGTCACCt/ggTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0050963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	312	596	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0050963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	52	287	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
HGF	3082	MSKCC	GRCh37	7	81355310	81355310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	102	203	0	ENST00000222390.5:c.1064G>A	p.Arg355Gln	p.R355Q	ENST00000222390	NM_000601.4	355	cGa/cAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40979319	40979319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	340	540	10	ENST00000373198.4:c.1814C>T	p.Thr605Met	p.T605M	ENST00000373198	NM_133170.3	605	aCg/aTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043408	180043408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	123	615	2	ENST00000261937.6:c.3178C>T	p.Arg1060Trp	p.R1060W	ENST00000261937	NM_182925.4	1060	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023401	27023404	+	frameshift_variant	Frame_Shift_Del	DEL	CCAC	CCAC	-			P-0050963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	75	269	0	ENST00000324856.7:c.508_511del	p.His170AsnfsTer61	p.H170Nfs*61	ENST00000324856	NM_006015.4	169	ttCCAC/tt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244137	153244138	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCACACAACTCCCCCACTC			P-0050963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	118	405	1	ENST00000281708.4:c.2001_2019dup	p.Arg674GlufsTer26	p.R674Efs*26	ENST00000281708	NM_033632.3	673	-/GAGTGGGGGAGTTGTGTGG																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061238	38061239	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGAGTCCGGGTGCAGCGTCCAGTA			P-0050970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	254	566	0	ENST00000250448.2:c.727_750dup	p.Tyr243_Ser250dup	p.Y243_S250dup	ENST00000250448	NM_004496.3	243	-/TACTGGACGCTGCACCCGGACTCC																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061529	38061538	+	protein_altering_variant	In_Frame_Del	DEL	CCGCGCGGCT	CCGCGCGGCT	GGCGGCG			P-0050970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	67	276	1	ENST00000250448.2:c.451_460delinsCGCCGCC	p.Ser151_Gly154delinsArgArgArg	p.S151_G154delinsRRR	ENST00000250448	NM_004496.3	151	AGCCGCGCGGgc/CGCCGCCgc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0050970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	243	518	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	145	211	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981518	70981518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	219	918	1	ENST00000276594.2:c.578C>A	p.Ala193Asp	p.A193D	ENST00000276594	NM_024504.3	193	gCt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			544	201	516	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0050981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			412	131	322	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602764	10602764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			713	247	730	0	ENST00000171111.5:c.814C>T	p.Arg272Cys	p.R272C	ENST00000171111	NM_203500.1	272	Cgc/Tgc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480383	89480383	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	86	267	0	ENST00000336596.2:c.2220G>T	p.Met740Ile	p.M740I	ENST00000336596	NM_005233.5	740	atG/atT																																																																															
STK11	6794	MSKCC	GRCh37	19	1220505	1220505	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0050981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			637	194	546	0	ENST00000326873.7:c.597+1G>T		p.X199_splice	ENST00000326873	NM_000455.4	199																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27092813	27092884	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACCCCCATATTCCATGGGTGGAACCATGGCCAACAATTCTGCAGGTAAGTGCTAGTCATTCTCACTAGGGA	GACCCCCATATTCCATGGGTGGAACCATGGCCAACAATTCTGCAGGTAAGTGCTAGTCATTCTCACTAGGGA	-			P-0050981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			534	63	419	0	ENST00000324856.7:c.2834_2878+27del		p.X945_splice	ENST00000324856	NM_006015.4	945																																																																																
SLX4	84464	MSKCC	GRCh37	16	3658833	3658833	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			543	152	409	0	ENST00000294008.3:c.133G>C	p.Asp45His	p.D45H	ENST00000294008	NM_032444.2	45	Gat/Cat																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641547	23641547	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			477	151	471	0	ENST00000261584.4:c.1928T>G	p.Phe643Cys	p.F643C	ENST00000261584	NM_024675.3	643	tTt/tGt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78820274	78820274	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0050981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			709	121	490	0	ENST00000306801.3:c.1214A>G	p.His405Arg	p.H405R	ENST00000306801	NM_020761.2	405	cAc/cGc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225378333	225378333	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			354	86	235	0	ENST00000264414.4:c.562C>T	p.Gln188Ter	p.Q188*	ENST00000264414	NM_003590.4	188	Cag/Tag																																																																															
NF2	4771	MSKCC	GRCh37	22	30051619	30051619	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	114	307	0	ENST00000338641.4:c.553G>T	p.Glu185Ter	p.E185*	ENST00000338641	NM_000268.3	185	Gag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528638	89528638	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			281	60	194	0	ENST00000336596.2:c.2938C>G	p.Pro980Ala	p.P980A	ENST00000336596	NM_005233.5	980	Cca/Gca																																																																															
PREX2	80243	MSKCC	GRCh37	8	68972956	68972956	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			591	52	368	0	ENST00000288368.4:c.1281G>T	p.Arg427Ser	p.R427S	ENST00000288368	NM_024870.2	427	agG/agT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050982-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			519	336	500	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0050982-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			474	339	644	2	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105616	27105620	+	frameshift_variant	Frame_Shift_Del	DEL	ACGCT	ACGCT	-			P-0050982-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			367	432	492	0	ENST00000324856.7:c.5229_5233del	p.Leu1744GlyfsTer10	p.L1744Gfs*10	ENST00000324856	NM_006015.4	1743	ACGCTa/a																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913783	32913784	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050982-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			330	269	477	0	ENST00000380152.3:c.5297dup	p.Asn1766LysfsTer2	p.N1766Kfs*2	ENST00000380152		1764	tca/tcAa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533689	63533689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050982-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			596	317	576	0	ENST00000307078.5:c.1465C>T	p.Pro489Ser	p.P489S	ENST00000307078	NM_004655.3	489	Ccc/Tcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221300	36221301	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0050982-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			953	758	732	3	ENST00000222270.7:c.5134_5135delinsTT	p.Gly1712Phe	p.G1712F	ENST00000222270	NM_014727.1	1712	GGc/TTc																																																																															
IDH1	3417	MSKCC	GRCh37	2	209103811	209103811	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050982-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			400	258	531	0	ENST00000345146.2:c.1138A>T	p.Ile380Phe	p.I380F	ENST00000345146	NM_005896.2	380	Att/Ttt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265076	46265076	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050982-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			522	310	486	1	ENST00000371998.3:c.1946C>G	p.Ser649Cys	p.S649C	ENST00000371998		649	tCt/tGt																																																																															
KDR	3791	MSKCC	GRCh37	4	55970813	55970813	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050982-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			761	61	556	0	ENST00000263923.4:c.1984C>G	p.Leu662Val	p.L662V	ENST00000263923	NM_002253.2	662	Cta/Gta																																																																															
ATRX	546	MSKCC	GRCh37	X	76813108	76813108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050982-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			609	246	532	1	ENST00000373344.5:c.6513G>T	p.Met2171Ile	p.M2171I	ENST00000373344	NM_000489.3	2171	atG/atT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050984-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	208	512	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876449	35876449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2229232		P-0050984-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			570	356	641	0	ENST00000303115.3:c.1241C>T	p.Thr414Met	p.T414M	ENST00000303115	NM_002185.3	414	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0050984-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	398	622	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591837	48591837	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050984-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			299	267	540	0	ENST00000342988.3:c.1000C>T	p.Gln334Ter	p.Q334*	ENST00000342988	NM_005359.5	334	Cag/Tag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0050984-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			757	180	541	1	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																															
PREX2	80243	MSKCC	GRCh37	8	68950487	68950487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050984-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			652	111	538	0	ENST00000288368.4:c.799C>A	p.Leu267Ile	p.L267I	ENST00000288368	NM_024870.2	267	Ctt/Att																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0050990-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			578	273	379	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050990-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			694	227	564	1	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38274929	38274929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050990-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			852	110	633	0	ENST00000425967.3:c.1651G>A	p.Ala551Thr	p.A551T	ENST00000425967	NM_001174067.1	551	Gca/Aca																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602748	10602748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050990-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			746	226	658	0	ENST00000171111.5:c.830C>T	p.Thr277Met	p.T277M	ENST00000171111	NM_203500.1	277	aCg/aTg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37002659	37002659	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050990-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			637	68	487	0	ENST00000358127.4:c.590G>T	p.Arg197Leu	p.R197L	ENST00000358127	NM_001280556.1	197	cGc/cTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390794	139390794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	85	844	0	ENST00000277541.6:c.7397C>T	p.Thr2466Met	p.T2466M	ENST00000277541	NM_017617.3	2466	aCg/aTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965848	25965848	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	102	528	0	ENST00000435504.4:c.3358A>G	p.Met1120Val	p.M1120V	ENST00000435504		1120	Atg/Gtg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49939856	49939856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	65	674	0	ENST00000296474.3:c.1187G>A	p.Arg396Gln	p.R396Q	ENST00000296474	NM_002447.2	396	cGa/cAa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729945	30729947	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0051045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	50	512	0	ENST00000359013.4:c.1543_1545del	p.Asn515del	p.N515del	ENST00000359013	NM_001024847.2	514	gACAac/gac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0051064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	165	428	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764146326		P-0051064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	357	631	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288297	33288297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	136	540	1	ENST00000374542.5:c.1111C>T	p.Arg371Trp	p.R371W	ENST00000374542	NM_001141970.1	371	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591912	48591912	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	235	450	0	ENST00000342988.3:c.1075G>T	p.Gly359Ter	p.G359*	ENST00000342988	NM_005359.5	359	Gga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	8	474	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0051065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	34	487	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111554	8111554	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	90	666	0	ENST00000346208.3:c.1040T>G	p.Leu347Arg	p.L347R	ENST00000346208		347	cTt/cGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100531	8100532	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0051065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	144	893	1	ENST00000346208.3:c.509dup	p.Gly171ArgfsTer132	p.G171Rfs*132	ENST00000346208		169	acc/aCcc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828796	72828796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	47	655	0	ENST00000268489.5:c.7785G>T	p.Gln2595His	p.Q2595H	ENST00000268489	NM_006885.3	2595	caG/caT																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264341	30264341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	10	178	1	ENST00000322652.5:c.76G>T	p.Gly26Trp	p.G26W	ENST00000322652	NM_015355.2	26	Ggg/Tgg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174439	11174439	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	137	686	0	ENST00000361445.4:c.7236C>G	p.Asp2412Glu	p.D2412E	ENST00000361445	NM_004958.3	2412	gaC/gaG																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100802	8100802	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0051070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	109	718	0	ENST00000346208.3:c.776C>G	p.Thr259Arg	p.T259R	ENST00000346208		259	aCa/aGa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817793	3817794	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0051070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	63	586	0	ENST00000262367.5:c.3177dup	p.Lys1060Ter	p.K1060*	ENST00000262367	NM_004380.2	1059	-/T																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967227	134967227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	95	616	0	ENST00000398015.3:c.2566C>A	p.Leu856Ile	p.L856I	ENST00000398015	NM_004441.4	856	Ctc/Atc																																																																															
TP63	8626	MSKCC	GRCh37	3	189590655	189590655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	40	442	0	ENST00000264731.3:c.1220G>T	p.Gly407Val	p.G407V	ENST00000264731	NM_003722.4	407	gGc/gTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549314	187549314	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	74	481	0	ENST00000441802.2:c.4804G>T	p.Glu1602Ter	p.E1602*	ENST00000441802	NM_005245.3	1602	Gag/Tag																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0051070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	206	647	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0051072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	184	410	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0051072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	350	562	1	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767326		P-0051072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	14	291	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974783	21974783	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	202	281	0	ENST00000304494.5:c.44G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tGg/tAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426355	49426355	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	356	794	2	ENST00000301067.7:c.12133C>T	p.Gln4045Ter	p.Q4045*	ENST00000301067	NM_003482.3	4045	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0051075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	96	455	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	113	752	0	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18650591	18650591	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	115	464	0	ENST00000266497.5:c.2802G>T	p.Gln934His	p.Q934H	ENST00000266497		934	caG/caT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045533	47045533	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0051075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	143	788	0	ENST00000329236.7:c.2266A>T	p.Lys756Ter	p.K756*	ENST00000329236	NM_001204466.1	756	Aag/Tag																																																																															
ABL1	25	MSKCC	GRCh37	9	133760462	133760462	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	163	800	0	ENST00000318560.5:c.2785G>T	p.Gly929Cys	p.G929C	ENST00000318560	NM_005157.4	929	Ggc/Tgc																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51436136	51436136	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	75	355	0	ENST00000262662.1:c.96T>A	p.Asn32Lys	p.N32K	ENST00000262662		32	aaT/aaA																																																																															
TET1	80312	MSKCC	GRCh37	10	70332630	70332630	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	53	542	0	ENST00000373644.4:c.535T>A	p.Ser179Thr	p.S179T	ENST00000373644	NM_030625.2	179	Tct/Act																																																																															
ATM	472	MSKCC	GRCh37	11	108098407	108098407	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	56	406	0	ENST00000278616.4:c.56G>T	p.Arg19Ile	p.R19I	ENST00000278616	NM_000051.3	19	aGa/aTa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864711	57864711	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	142	817	0	ENST00000228682.2:c.2188C>A	p.Leu730Met	p.L730M	ENST00000228682	NM_005269.2	730	Ctg/Atg																																																																															
B2M	567	MSKCC	GRCh37	15	45003680	45003750	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	CGTTTAATATAAGTGGAGGCGTCGCGCTGGCGGGCATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCT	CGTTTAATATAAGTGGAGGCGTCGCGCTGGCGGGCATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCT	-			P-0051075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	39	281	0	ENST00000558401.1:c.-63_8del		p.*21*	ENST00000558401	NM_004048.2																																																																																	
RYBP	23429	MSKCC	GRCh37	3	72427703	72427703	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	91	473	0	ENST00000477973.2:c.785A>G	p.Lys263Glu	p.K263E	ENST00000477973	NM_012234.5	263	Aag/Gag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209522	98209522	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	147	822	1	ENST00000331920.6:c.4016G>T	p.Trp1339Leu	p.W1339L	ENST00000331920	NM_000264.3	1339	tGg/tTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411027	63411027	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	135	728	0	ENST00000330258.3:c.2140C>T	p.Gln714Ter	p.Q714*	ENST00000330258	NM_152424.3	714	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0051080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	188	666	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437465	52437465	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	134	592	0	ENST00000460680.1:c.1696G>T	p.Glu566Ter	p.E566*	ENST00000460680	NM_004656.3	566	Gag/Tag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56493461	56493461	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	51	438	0	ENST00000267101.3:c.2869A>T	p.Thr957Ser	p.T957S	ENST00000267101	NM_001982.3	957	Acc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	240	393	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0051081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	79	278	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0051081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	315	435	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
INSR	3643	MSKCC	GRCh37	19	7166282	7166282	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	227	617	0	ENST00000302850.5:c.1744G>T	p.Gly582Cys	p.G582C	ENST00000302850	NM_000208.2	582	Ggt/Tgt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713544	30713546	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0051081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	118	513	0	ENST00000359013.4:c.946_948delAAG	p.Lys316del	p.K316del	ENST00000359013	NM_001024847.2	315	gAGAag/gag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016564	12016564	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	86	260	0	ENST00000353533.5:c.700A>T	p.Asn234Tyr	p.N234Y	ENST00000353533	NM_003010.3	234	Aat/Tat																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713129	30713129	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0051081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	101	273	1	ENST00000359013.4:c.530-1G>T		p.X177_splice	ENST00000359013	NM_001024847.2	177																																																																																
SETD2	29072	MSKCC	GRCh37	3	47205386	47205386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	142	454	1	ENST00000409792.3:c.29C>T	p.Pro10Leu	p.P10L	ENST00000409792	NM_014159.6	10	cCg/cTg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12043184	12043184	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0051081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	72	242	0	ENST00000353533.5:c.1069A>T	p.Lys357Ter	p.K357*	ENST00000353533	NM_003010.3	357	Aag/Tag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933455	39933455	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	225	341	0	ENST00000378444.4:c.1144G>T	p.Glu382Ter	p.E382*	ENST00000378444	NM_001123385.1	382	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0051095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	142	341	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0051095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	244	745	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81331962	81331962	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201768315		P-0051095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	59	286	0	ENST00000222390.5:c.2122C>T	p.Arg708Ter	p.R708*	ENST00000222390	NM_000601.4	708	Cga/Tga																																																																															
PPARG	5468	MSKCC	GRCh37	3	12475550	12475550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1479145908		P-0051095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	218	442	0	ENST00000287820.6:c.1424C>T	p.Thr475Met	p.T475M	ENST00000287820	NM_015869.4	475	aCg/aTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302307	15302307	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115029695		P-0051095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	248	723	2	ENST00000263388.2:c.964G>A	p.Val322Met	p.V322M	ENST00000263388	NM_000435.2	322	Gtg/Atg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198265062	198265062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	154	344	1	ENST00000335508.6:c.2815C>T	p.Arg939Cys	p.R939C	ENST00000335508	NM_012433.2	939	Cgt/Tgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971092	21971093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0051095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	387	481	2	ENST00000304494.5:c.265_266insT	p.Gly89ValfsTer31	p.G89Vfs*31	ENST00000304494	NM_000077.4	89	ggc/gTgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0051112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	203	803	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118361988	118361988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	120	388	0	ENST00000534358.1:c.4774G>T	p.Asp1592Tyr	p.D1592Y	ENST00000534358	NM_005933.3	1592	Gat/Tat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928002	178928002	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	61	401	0	ENST00000263967.3:c.1280T>A	p.Ile427Lys	p.I427K	ENST00000263967	NM_006218.2	427	aTa/aAa																																																																															
APC	324	MSKCC	GRCh37	5	112175106	112175106	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	30	297	0	ENST00000257430.4:c.3815C>A	p.Ser1272Ter	p.S1272*	ENST00000257430	NM_000038.5	1272	tCa/tAa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135802620	135802620	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	94	408	0	ENST00000298552.3:c.178A>T	p.Ile60Phe	p.I60F	ENST00000298552	NM_001162426.1	60	Atc/Ttc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0051115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	11	530	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
AR	367	MSKCC	GRCh37	X	66931273	66931273	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	14	298	0	ENST00000374690.3:c.1915A>G	p.Lys639Glu	p.K639E	ENST00000374690	NM_000044.3	639	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0051120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	135	692	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1207078	1207078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	212	858	0	ENST00000326873.7:c.166G>T	p.Gly56Trp	p.G56W	ENST00000326873	NM_000455.4	56	Ggg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0051120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	96	870	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610154	10610154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	220	852	0	ENST00000171111.5:c.556G>A	p.Gly186Ser	p.G186S	ENST00000171111	NM_203500.1	186	Ggc/Agc																																																																															
XIAP	331	MSKCC	GRCh37	X	123019697	123019697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	58	345	0	ENST00000355640.3:c.185G>A	p.Arg62Gln	p.R62Q	ENST00000355640		62	cGg/cAg																																																																															
PGR	5241	MSKCC	GRCh37	11	100912787	100912787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	66	478	0	ENST00000325455.5:c.2535G>T	p.Arg845Ser	p.R845S	ENST00000325455	NM_001202474.3	845	agG/agT																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431392	121431392	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	108	655	0	ENST00000257555.6:c.596G>T	p.Gly199Val	p.G199V	ENST00000257555		199	gGg/gTg																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871653	35871653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	200	467	0	ENST00000216797.5:c.853G>T	p.Asp285Tyr	p.D285Y	ENST00000216797	NM_020529.2	285	Gat/Tat																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143003195	143003195	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	150	395	0	ENST00000262992.4:c.2631T>A	p.Asp877Glu	p.D877E	ENST00000262992	NM_001101669.1	877	gaT/gaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0051135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	99	403	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0051135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	84	250	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163848	32163848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	90	671	0	ENST00000375023.3:c.5378G>A	p.Arg1793Gln	p.R1793Q	ENST00000375023	NM_004557.3	1793	cGa/cAa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220626	1220626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	120	774	0	ENST00000326873.7:c.644G>A	p.Gly215Asp	p.G215D	ENST00000326873	NM_000455.4	215	gGc/gAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980777	40980777	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	120	519	0	ENST00000373198.4:c.1709C>G	p.Thr570Arg	p.T570R	ENST00000373198	NM_133170.3	570	aCa/aGa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867414	35867415	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0051135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	42	342	1	ENST00000303115.3:c.228_229delinsAG	p.Leu77Val	p.L77V	ENST00000303115	NM_002185.3	76	gcCCtc/gcAGtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0051147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	115	377	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175494	112175500	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCAGC	TGCCAGC	-			P-0051147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	51	192	0	ENST00000257430.4:c.4204_4210del	p.Ala1402ProfsTer11	p.A1402Pfs*11	ENST00000257430	NM_000038.5	1401	atTGCCAGC/at																																																																															
YES1	7525	MSKCC	GRCh37	18	745967	745967	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	61	317	0	ENST00000314574.4:c.555A>T	p.Arg185Ser	p.R185S	ENST00000314574	NM_005433.3	185	agA/agT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187998	32187998	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	87	548	1	ENST00000375023.3:c.1223G>T	p.Ser408Ile	p.S408I	ENST00000375023	NM_004557.3	408	aGc/aTc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103506168	103506168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	47	218	0	ENST00000355739.4:c.326T>C	p.Leu109Pro	p.L109P	ENST00000355739	NM_000123.3	109	cTt/cCt																																																																															
BCL2	596	MSKCC	GRCh37	18	60795992	60795992	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0051159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	41	288	1	ENST00000333681.4:c.586G>T	p.Asp196Tyr	p.D196Y	ENST00000333681		196	Gat/Tat																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	70	335	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720737	89720737	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0051162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	15	90	0	ENST00000371953.3:c.888T>A	p.Cys296Ter	p.C296*	ENST00000371953	NM_000314.4	296	tgT/tgA																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499477	89499477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	44	319	0	ENST00000336596.2:c.2647C>T	p.Arg883Trp	p.R883W	ENST00000336596	NM_005233.5	883	Cgg/Tgg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857046	9857046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	10	232	0	ENST00000330684.3:c.4355G>A	p.Arg1452His	p.R1452H	ENST00000330684	NM_001134407.1	1452	cGc/cAc																																																																															
AXL	558	MSKCC	GRCh37	19	41758268	41758268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	80	589	1	ENST00000301178.4:c.1724C>T	p.Thr575Met	p.T575M	ENST00000301178	NM_021913.4	575	aCg/aTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176631138	176631138	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	74	437	0	ENST00000439151.2:c.1081T>A	p.Tyr361Asn	p.Y361N	ENST00000439151	NM_022455.4	361	Tat/Aat																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53243952	53243952	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0051220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	115	429	0	ENST00000375401.3:c.1041del	p.Asp347GlufsTer83	p.D347Efs*83	ENST00000375401	NM_004187.3	347	gaC/ga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092809	27092809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	75	435	0	ENST00000324856.7:c.2830C>T	p.Gln944Ter	p.Q944*	ENST00000324856	NM_006015.4	944	Cag/Tag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120459182	120459182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	81	488	0	ENST00000256646.2:c.6163C>T	p.His2055Tyr	p.H2055Y	ENST00000256646	NM_024408.3	2055	Cac/Tac																																																																															
ALK	238	MSKCC	GRCh37	2	29445213	29445213	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	95	505	0	ENST00000389048.3:c.3512T>G	p.Ile1171Ser	p.I1171S	ENST00000389048	NM_004304.4	1171	aTc/aGc																																																																															
IDH1	3417	MSKCC	GRCh37	2	209103898	209103898	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	104	390	1	ENST00000345146.2:c.1051G>C	p.Glu351Gln	p.E351Q	ENST00000345146	NM_005896.2	351	Gag/Cag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732942	30732942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	54	272	0	ENST00000359013.4:c.1630G>A	p.Glu544Lys	p.E544K	ENST00000359013	NM_001024847.2	544	Gag/Aag																																																																															
DAXX	1616	MSKCC	GRCh37	6	33290684	33290684	+	5_prime_UTR_variant	5'UTR	SNP	C	C	T			P-0051231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	79	497	1	ENST00000374542.5:c.-98G>A		p.*33*	ENST00000374542	NM_001141970.1																																																																																	
CDKN1A	1026	MSKCC	GRCh37	6	36651983	36651984	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0051231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	205	617	0	ENST00000244741.5:c.106dup	p.Ala36GlyfsTer12	p.A36Gfs*12	ENST00000244741	NM_000389.4	35	-/G																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244091	153244091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	10	479	0	ENST00000281708.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000281708	NM_033632.3	689	cGg/cAg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0051236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	17	435	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
EED	8726	MSKCC	GRCh37	11	85988127	85988127	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	13	333	0	ENST00000263360.6:c.1072T>C	p.Tyr358His	p.Y358H	ENST00000263360	NM_003797.3	358	Tac/Cac																																																																															
POLE	5426	MSKCC	GRCh37	12	133226031	133226031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	64	597	0	ENST00000320574.5:c.3866G>A	p.Arg1289His	p.R1289H	ENST00000320574	NM_006231.2	1289	cGc/cAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860690	151860690	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0051241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	38	378	0	ENST00000262189.6:c.9972del	p.Ser3325AlafsTer36	p.S3325Afs*36	ENST00000262189	NM_170606.2	3324	acT/ac																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239871	53239871	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	38	234	0	ENST00000375401.3:c.1570A>G	p.Asn524Asp	p.N524D	ENST00000375401	NM_004187.3	524	Aac/Gac																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982149	201982149	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	22	558	0	ENST00000359651.3:c.673A>C	p.Lys225Gln	p.K225Q	ENST00000359651		225	Aag/Cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	961	373	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0051249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	416	665	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44896902	44896902	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0051249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	242	129	0	ENST00000377967.4:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000377967	NM_021140.2	208	Caa/Taa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123185004	123185005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0051249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	33	76	0	ENST00000218089.9:c.1052_1053dup	p.Gln352TyrfsTer28	p.Q352Yfs*28	ENST00000218089	NM_001042749.1	351	cta/cTAta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0051254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	178	476	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0051254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	157	448	1	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866355	42866355	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	85	544	0	ENST00000398585.3:c.277G>T	p.Val93Phe	p.V93F	ENST00000398585	NM_001135099.1	93	Gtc/Ttc																																																																															
RET	5979	MSKCC	GRCh37	10	43606899	43606899	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	114	728	0	ENST00000355710.3:c.1508C>G	p.Thr503Arg	p.T503R	ENST00000355710	NM_020975.4	503	aCa/aGa																																																																															
PGR	5241	MSKCC	GRCh37	11	100999500	100999500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	120	729	0	ENST00000325455.5:c.302C>T	p.Ser101Phe	p.S101F	ENST00000325455	NM_001202474.3	101	tCt/tTt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435238	110435238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	112	340	0	ENST00000375856.3:c.3163G>T	p.Gly1055Cys	p.G1055C	ENST00000375856	NM_003749.2	1055	Ggc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220651	1220651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	131	690	0	ENST00000326873.7:c.669G>T	p.Glu223Asp	p.E223D	ENST00000326873	NM_000455.4	223	gaG/gaT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11137007	11137007	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	108	493	0	ENST00000344626.4:c.3200G>T	p.Gly1067Val	p.G1067V	ENST00000344626	NM_003072.3	1067	gGc/gTc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546950	9546950	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	122	285	0	ENST00000353224.5:c.1072C>G	p.Pro358Ala	p.P358A	ENST00000353224	NM_177990.2	358	Cct/Gct																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200703	128200703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	195	671	0	ENST00000341105.2:c.1102C>T	p.Pro368Ser	p.P368S	ENST00000341105	NM_032638.4	368	Cct/Tct																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670212	134670212	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0051254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	207	232	0	ENST00000398015.3:c.124-1G>T		p.X42_splice	ENST00000398015	NM_004441.4	42																																																																																
CSF1R	1436	MSKCC	GRCh37	5	149453034	149453034	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	159	289	0	ENST00000286301.3:c.912C>A	p.Ser304Arg	p.S304R	ENST00000286301	NM_005211.3	304	agC/agA																																																																															
BTK	695	MSKCC	GRCh37	X	100611236	100611236	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	208	377	0	ENST00000308731.7:c.1370T>A	p.Leu457Gln	p.L457Q	ENST00000308731	NM_000061.2	457	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0051255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	110	623	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0051263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	253	289	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0051263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	122	247	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578242	7578242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	247	484	0	ENST00000269305.4:c.607G>A	p.Val203Met	p.V203M	ENST00000269305	NM_001126112.2	203	Gtg/Atg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223334	2223334	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757410464		P-0051263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	109	565	0	ENST00000326181.6:c.946C>T	p.Arg316Cys	p.R316C	ENST00000326181	NM_032271.2	316	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0051277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	281	359	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0051277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	201	610	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0051277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	83	368	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0051277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	85	232	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	313	996	1	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	397013	397013	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	104	863	0	ENST00000262320.3:c.13G>C	p.Glu5Gln	p.E5Q	ENST00000262320	NM_003502.3	5	Gag/Cag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118862	70118867	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TTCTGA	TTCTGA	-			P-0051277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	188	575	0	ENST00000245479.2:c.434_439del	p.Leu145_Asn147delinsHis	p.L145_N147delinsH	ENST00000245479	NM_000346.3	145	cTTCTGAac/cac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220105	36220105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	104	914	0	ENST00000222270.7:c.4825G>A	p.Val1609Ile	p.V1609I	ENST00000222270	NM_014727.1	1609	Gtc/Atc																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961348	54961348	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	63	620	0	ENST00000312783.6:c.284C>G	p.Thr95Ser	p.T95S	ENST00000312783	NM_198436.1	95	aCc/aGc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535320	66535320	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	75	712	1	ENST00000273854.3:c.141C>A	p.Cys47Ter	p.C47*	ENST00000273854	NM_004439.5	47	tgC/tgA																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190584	32190584	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0051277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	101	788	0	ENST00000375023.3:c.156-1G>T		p.X52_splice	ENST00000375023	NM_004557.3	52																																																																																
EPHA7	2045	MSKCC	GRCh37	6	94068120	94068120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	131	245	0	ENST00000369303.4:c.842G>A	p.Arg281His	p.R281H	ENST00000369303	NM_004440.3	281	cGt/cAt																																																																															
SESN1	27244	MSKCC	GRCh37	6	109308791	109308791	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	47	286	0	ENST00000436639.2:c.1612G>C	p.Glu538Gln	p.E538Q	ENST00000436639	NM_014454.2	538	Gaa/Caa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0051282-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			876	102	890	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0051282-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			909	50	941	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
NF1	4763	MSKCC	GRCh37	17	29490316	29490327	+	inframe_deletion	In_Frame_Del	DEL	TTCGGAATTCTG	TTCGGAATTCTG	-			P-0051282-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			621	44	481	0	ENST00000358273.4:c.401_412del	p.Leu134_Ala138delinsPro	p.L134_A138delinsP	ENST00000358273	NM_001042492.2	134	cTTCGGAATTCTGcc/ccc																																																																															
RHOA	387	MSKCC	GRCh37	3	49405866	49405866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051282-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			645	56	610	0	ENST00000418115.1:c.272G>A	p.Ser91Asn	p.S91N	ENST00000418115	NM_001664.2	91	aGt/aAt																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	113	377	1	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439797	52439798	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0051303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	278	537	0	ENST00000460680.1:c.914_915del	p.Ser305Ter	p.S305*	ENST00000460680	NM_004656.3	305	tCT/t																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965568	93965568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	90	308	0	ENST00000369303.4:c.2360C>T	p.Pro787Leu	p.P787L	ENST00000369303	NM_004440.3	787	cCa/cTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0051304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	19	210	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692900	89692900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	38	290	0	ENST00000371953.3:c.384G>C	p.Lys128Asn	p.K128N	ENST00000371953	NM_000314.4	128	aaG/aaC																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260301	16260302	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0051304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	69	423	0	ENST00000375759.3:c.7567_7568del	p.Lys2523GlyfsTer3	p.K2523Gfs*3	ENST00000375759	NM_015001.2	2522	acAAag/acag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645418	67645418	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	23	358	0	ENST00000264010.4:c.683T>G	p.Phe228Cys	p.F228C	ENST00000264010	NM_006565.3	228	tTt/tGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68772275	68772275	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	94	593	0	ENST00000261769.5:c.127del	p.Arg43GlyfsTer13	p.R43Gfs*13	ENST00000261769	NM_004360.3	42	Ccc/cc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206845	36206858	+	frameshift_variant	Frame_Shift_Del	DEL	CGGAAAAGGACAAG	CGGAAAAGGACAAG	-			P-0051304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	71	360	0	ENST00000300305.3:c.654_667del	p.Ser218ArgfsTer5	p.S218Rfs*5	ENST00000300305		218	agCTTGTCCTTTTCCGag/agag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151843728	151843728	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	66	318	0	ENST00000262189.6:c.13987C>G	p.Leu4663Val	p.L4663V	ENST00000262189	NM_170606.2	4663	Ctg/Gtg																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127920590	127920590	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	44	416	0	ENST00000373547.4:c.309G>A	p.Trp103Ter	p.W103*	ENST00000373547	NM_002721.4	103	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	241	692	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743923	46743923	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28910278		P-0051311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	143	535	0	ENST00000371975.4:c.2213G>A	p.Arg738His	p.R738H	ENST00000371975	NM_003579.3	738	cGt/cAt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499772	8499772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	52	485	0	ENST00000356435.5:c.2197C>T	p.Arg733Cys	p.R733C	ENST00000356435		733	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49422737	49422839	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAAGACTGAATGAGAAAGAGGAATTTGTGTAACACTTGGCCGCCTCTCCCCCAGCTTCGGACAACCCAGGTGAACTGGGCCTGGCCCACATCCAGAGTAGCAC	GAAGACTGAATGAGAAAGAGGAATTTGTGTAACACTTGGCCGCCTCTCCCCCAGCTTCGGACAACCCAGGTGAACTGGGCCTGGCCCACATCCAGAGTAGCAC	-			P-0051311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	228	471	0	ENST00000301067.7:c.14251+5_14256del		p.X4751_splice	ENST00000301067	NM_003482.3	4751																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0051325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	49	372	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0051325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	61	377	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266069	41266110	+	inframe_deletion	In_Frame_Del	DEL	TAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCA	TAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCA	-			P-0051325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	104	257	0	ENST00000349496.5:c.67_108del	p.His24_Ser37del	p.H24_S37del	ENST00000349496	NM_001904.3	22	gtTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCAt/gtt																																																																															
APC	324	MSKCC	GRCh37	5	112174580	112174580	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	161	249	0	ENST00000257430.4:c.3289G>T	p.Glu1097Ter	p.E1097*	ENST00000257430	NM_000038.5	1097	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0051327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	50	190	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953040	2953040	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141751925		P-0051327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	40	657	3	ENST00000396946.4:c.2900G>A	p.Arg967His	p.R967H	ENST00000396946	NM_032415.4	967	cGc/cAc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784120	9784120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	147	585	0	ENST00000377346.4:c.2688C>A	p.Ser896Arg	p.S896R	ENST00000377346	NM_005026.3	896	agC/agA																																																																															
TP53	7157	MSKCC	GRCh37	17	7574019	7574020	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0051327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	230	518	0	ENST00000269305.4:c.1007_1008del	p.Glu336AlafsTer10	p.E336Afs*10	ENST00000269305	NM_001126112.2	336	gAG/g																																																																															
MET	4233	MSKCC	GRCh37	7	116340304	116340304	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	16	240	0	ENST00000397752.3:c.1166T>A	p.Phe389Tyr	p.F389Y	ENST00000397752	NM_000245.2	389	tTt/tAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040969	47040969	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	95	729	0	ENST00000329236.7:c.1265A>T	p.Gln422Leu	p.Q422L	ENST00000329236	NM_001204466.1	422	cAg/cTg																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123480549	123480550	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0051327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	311	593	0	ENST00000371139.4:c.57_58delinsAA	p.Leu20Met	p.L20M	ENST00000371139	NM_001114937.2	19	ctCCtg/ctAAtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0051329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	126	571	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821643	72821645	+	inframe_deletion	In_Frame_Del	DEL	CCG	CCG	-			P-0051329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	14	57	0	ENST00000268489.5:c.10530_10532del	p.Gly3512del	p.G3512del	ENST00000268489	NM_006885.3	3510	ggCGGt/ggt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584761	48584761	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0051329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	117	423	1	ENST00000342988.3:c.839T>A	p.Leu280Ter	p.L280*	ENST00000342988	NM_005359.5	280	tTg/tAg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10246837	10246837	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	131	605	0	ENST00000340748.4:c.4568T>A	p.Phe1523Tyr	p.F1523Y	ENST00000340748		1523	tTc/tAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692802	89692802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	14	200	0	ENST00000371953.3:c.286C>A	p.Pro96Thr	p.P96T	ENST00000371953	NM_000314.4	96	Cca/Aca																																																																															
RB1	5925	MSKCC	GRCh37	13	48919223	48919223	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0051342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	26	131	0	ENST00000267163.4:c.388A>T	p.Lys130Ter	p.K130*	ENST00000267163	NM_000321.2	130	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753660142		P-0051342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	345	511	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																															
RHOA	387	MSKCC	GRCh37	3	49412892	49412892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	155	436	0	ENST00000418115.1:c.131C>T	p.Ala44Val	p.A44V	ENST00000418115	NM_001664.2	44	gCa/gTa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670645	134670645	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	130	486	0	ENST00000398015.3:c.556C>G	p.Leu186Val	p.L186V	ENST00000398015	NM_004441.4	186	Ctt/Gtt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933146	39933146	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	159	555	0	ENST00000378444.4:c.1453G>T	p.Glu485Ter	p.E485*	ENST00000378444	NM_001123385.1	485	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	447	412	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866689	37866689	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149210045		P-0051345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1188	232	984	0	ENST00000269571.5:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269571		286	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0051345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	231	814	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0051346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	96	400	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0051346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1119	79	644	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																															
ATM	472	MSKCC	GRCh37	11	108206608	108206608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	46	297	0	ENST00000278616.4:c.8188C>A	p.Gln2730Lys	p.Q2730K	ENST00000278616	NM_000051.3	2730	Cag/Aag																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736204	204736204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	34	287	0	ENST00000302823.3:c.561C>A	p.Ser187Arg	p.S187R	ENST00000302823	NM_005214.4	187	agC/agA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0051352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	101	549	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629328	187629328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	44	532	1	ENST00000441802.2:c.1654G>T	p.Glu552Ter	p.E552*	ENST00000441802	NM_005245.3	552	Gaa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101352	27101352	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	114	695	0	ENST00000324856.7:c.4634G>A	p.Trp1545Ter	p.W1545*	ENST00000324856	NM_006015.4	1545	tGg/tAg																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166466	118166466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	34	378	0	ENST00000369448.3:c.976C>A	p.Arg326Ser	p.R326S	ENST00000369448	NM_017709.3	326	Cgc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0051353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	310	610	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0051353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	61	283	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881392	37881392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	1006	595	0	ENST00000269571.5:c.2584A>G	p.Thr862Ala	p.T862A	ENST00000269571		862	Aca/Gca																																																																															
ERG	2078	MSKCC	GRCh37	21	39795341	39795341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	118	482	1	ENST00000288319.7:c.379G>A	p.Val127Met	p.V127M	ENST00000288319	NM_182918.3	127	Gtg/Atg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743942	40743942	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868489194		P-0051353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	267	512	0	ENST00000373198.4:c.3053G>A	p.Arg1018Gln	p.R1018Q	ENST00000373198	NM_133170.3	1018	cGa/cAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29556077	29556077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	120	217	0	ENST00000358273.4:c.2444G>A	p.Arg815Lys	p.R815K	ENST00000358273	NM_001042492.2	815	aGg/aAg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs926053251		P-0051355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	313	513	0	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36653546	36653546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	272	564	0	ENST00000244741.5:c.464G>A	p.Arg155His	p.R155H	ENST00000244741	NM_000389.4	155	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	90	423	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0051372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	83	436	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023108	27023108	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	64	90	0	ENST00000324856.7:c.214G>T	p.Glu72Ter	p.E72*	ENST00000324856	NM_006015.4	72	Gag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258970	153258970	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	54	333	0	ENST00000281708.4:c.845C>A	p.Ser282Ter	p.S282*	ENST00000281708	NM_033632.3	282	tCa/tAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879622	151879622	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	99	354	0	ENST00000262189.6:c.5323C>T	p.Gln1775Ter	p.Q1775*	ENST00000262189	NM_170606.2	1775	Cag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118896	115118896	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	285	397	0	ENST00000257566.3:c.445T>A	p.Tyr149Asn	p.Y149N	ENST00000257566	NM_016569.3	149	Tac/Aac																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907097	101907097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	67	473	0	ENST00000374994.4:c.1057G>A	p.Gly353Arg	p.G353R	ENST00000374994	NM_004612.2	353	Gga/Aga																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274910	41274910	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	135	559	0	ENST00000349496.5:c.1160A>T	p.Asn387Ile	p.N387I	ENST00000349496	NM_001904.3	387	aAt/aTt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2106730	2106730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	145	738	0	ENST00000219476.3:c.734G>A	p.Arg245His	p.R245H	ENST00000219476	NM_000548.3	245	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420204	49420204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	166	642	0	ENST00000301067.7:c.15545G>A	p.Gly5182Asp	p.G5182D	ENST00000301067	NM_003482.3	5182	gGc/gAc																																																																															
MITF	4286	MSKCC	GRCh37	3	70008509	70008509	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	127	385	0	ENST00000352241.4:c.1099G>T	p.Glu367Ter	p.E367*	ENST00000352241	NM_198159.2	367	Gaa/Taa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56152426	56152426	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0051372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	62	220	0	ENST00000399503.3:c.483-1G>A		p.X161_splice	ENST00000399503	NM_005921.1	161																																																																																
APC	324	MSKCC	GRCh37	5	112175770	112175785	+	frameshift_variant	Frame_Shift_Del	DEL	GGAAAGTACTCCAGAT	GGAAAGTACTCCAGAT	-			P-0051372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	78	384	0	ENST00000257430.4:c.4482_4497del	p.Glu1494AspfsTer8	p.E1494Dfs*8	ENST00000257430	NM_000038.5	1493	acGGAAAGTACTCCAGAT/ac																																																																															
PREX2	80243	MSKCC	GRCh37	8	68934334	68934334	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	81	558	0	ENST00000288368.4:c.400C>A	p.Leu134Ile	p.L134I	ENST00000288368	NM_024870.2	134	Ctt/Att																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891346	101891346	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	129	506	0	ENST00000374994.4:c.307C>T	p.Gln103Ter	p.Q103*	ENST00000374994	NM_004612.2	103	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0051374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	195	578	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0051374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	87	398	1	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
MED12	9968	MSKCC	GRCh37	X	70347846	70347846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	166	627	1	ENST00000374080.3:c.3085C>T	p.Pro1029Ser	p.P1029S	ENST00000374080		1029	Cct/Tct																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206898	36206898	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0051374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	10	287	0	ENST00000300305.3:c.614G>C	p.Arg205Thr	p.R205T	ENST00000300305		205	aGa/aCa																																																																															
MGA	23269	MSKCC	GRCh37	15	41988452	41988452	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0051374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	153	477	0	ENST00000219905.7:c.1244C>G	p.Ser415Ter	p.S415*	ENST00000219905	NM_001164273.1	415	tCa/tGa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934174	39934174	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	148	664	0	ENST00000378444.4:c.425C>A	p.Pro142Gln	p.P142Q	ENST00000378444	NM_001123385.1	142	cCa/cAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29684350	29684350	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	108	437	0	ENST00000358273.4:c.7933G>T	p.Glu2645Ter	p.E2645*	ENST00000358273	NM_001042492.2	2645	Gag/Tag																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732415	74732415	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	152	452	0	ENST00000359995.5:c.494C>A	p.Ser165Tyr	p.S165Y	ENST00000359995	NM_001195427.1	165	tCc/tAc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225422505	225422505	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	79	424	0	ENST00000264414.4:c.135G>C	p.Gln45His	p.Q45H	ENST00000264414	NM_003590.4	45	caG/caC																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934222	49934222	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	207	691	0	ENST00000296474.3:c.2285G>A	p.Trp762Ter	p.W762*	ENST00000296474	NM_002447.2	762	tGg/tAg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515664	31515664	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	96	408	1	ENST00000344624.3:c.955G>T	p.Gly319Cys	p.G319C	ENST00000344624		319	Ggt/Tgt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32184743	32184743	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	163	591	0	ENST00000375023.3:c.1840C>A	p.Leu614Ile	p.L614I	ENST00000375023	NM_004557.3	614	Ctc/Atc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38139056	38139056	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	152	468	0	ENST00000317025.8:c.3547G>C	p.Glu1183Gln	p.E1183Q	ENST00000317025	NM_023034.1	1183	Gaa/Caa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146196	38146196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	290	612	0	ENST00000317025.8:c.3310G>A	p.Asp1104Asn	p.D1104N	ENST00000317025	NM_023034.1	1104	Gat/Aat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913384		P-0051379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	308	592	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0051379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	332	668	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015039	37015039	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	481	528	0	ENST00000358127.4:c.365G>T	p.Arg122Leu	p.R122L	ENST00000358127	NM_001280556.1	122	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0051406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	31	354	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	127	546	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	54	273	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244067	153244071	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTT	AGCTT	-			P-0051406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	45	344	0	ENST00000281708.4:c.2086_2090del	p.Lys696AlafsTer6	p.K696Afs*6	ENST00000281708	NM_033632.3	696	AAGCTg/g																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151851502	151851502	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	35	382	0	ENST00000262189.6:c.11989A>G	p.Thr3997Ala	p.T3997A	ENST00000262189	NM_170606.2	3997	Act/Gct																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343021	118343021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	30	239	0	ENST00000534358.1:c.1147G>A	p.Ala383Thr	p.A383T	ENST00000534358	NM_005933.3	383	Gct/Act																																																																															
STAT3	6774	MSKCC	GRCh37	17	40497645	40497645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	136	505	0	ENST00000264657.5:c.304G>A	p.Ala102Thr	p.A102T	ENST00000264657	NM_139276.2	102	Gcc/Acc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430900	181430901	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0051412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	66	768	0	ENST00000325404.1:c.758dupC	p.Val254CysfsTer56	p.V254Cfs*56	ENST00000325404	NM_003106.3	251	agc/agCc																																																																															
MSI1	4440	MSKCC	GRCh37	12	120796850	120796850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	111	512	0	ENST00000257552.2:c.409G>A	p.Asp137Asn	p.D137N	ENST00000257552	NM_002442.3	137	Gac/Aac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118392616	118392616	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	33	323	0	ENST00000534358.1:c.11648T>C	p.Ile3883Thr	p.I3883T	ENST00000534358	NM_005933.3	3883	aTt/aCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	35	360	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0051425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	39	581	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484269	8484269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	41	432	0	ENST00000356435.5:c.3263G>A	p.Arg1088His	p.R1088H	ENST00000356435		1088	cGt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218083	36218084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0051425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	30	359	0	ENST00000222270.7:c.4031dup	p.Cys1344TrpfsTer3	p.C1344Wfs*3	ENST00000222270	NM_014727.1	1344	tgc/tGgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0051427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	120	375	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115701	8115701	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C	rs112417755		P-0051427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	45	174	0	ENST00000346208.3:c.1048-1G>C		p.X350_splice	ENST00000346208		350																																																																																
SYK	6850	MSKCC	GRCh37	9	93639905	93639905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201438493		P-0051427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	58	200	1	ENST00000375746.1:c.1234G>A	p.Ala412Thr	p.A412T	ENST00000375746	NM_001174167.1	412	Gct/Act																																																																															
CBFB	865	MSKCC	GRCh37	16	67070660	67070660	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0051427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	43	102	0	ENST00000412916.2:c.282+2T>C		p.X94_splice	ENST00000412916		94																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	92	316	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	275	722	0	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056021	26056021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	27	236	0	ENST00000343677.2:c.636G>C	p.Lys212Asn	p.K212N	ENST00000343677	NM_005319.3	212	aaG/aaC																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412627	139412627	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	63	598	0	ENST00000277541.6:c.1217del	p.Gly406AlafsTer225	p.G406Afs*225	ENST00000277541	NM_017617.3	406	gGc/gc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28895658	28895658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	63	440	0	ENST00000282397.4:c.3116G>A	p.Cys1039Tyr	p.C1039Y	ENST00000282397	NM_002019.4	1039	tGt/tAt																																																																															
MPL	4352	MSKCC	GRCh37	1	43804244	43804244	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	67	376	1	ENST00000372470.3:c.244C>A	p.Gln82Lys	p.Q82K	ENST00000372470	NM_005373.2	82	Cag/Aag																																																																															
HRAS	3265	MSKCC	GRCh37	11	533790	533790	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	43	612	0	ENST00000311189.7:c.266C>G	p.Ser89Cys	p.S89C	ENST00000311189		89	tCt/tGt																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38631957	38631957	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	29	480	0	ENST00000299084.4:c.443C>A	p.Ser148Tyr	p.S148Y	ENST00000299084	NM_152594.2	148	tCc/tAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347891	347891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	171	802	0	ENST00000262320.3:c.1615G>T	p.Val539Phe	p.V539F	ENST00000262320	NM_003502.3	539	Gtc/Ttc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2122329	2122329	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	114	624	0	ENST00000219476.3:c.2185A>T	p.Ser729Cys	p.S729C	ENST00000219476	NM_000548.3	729	Agt/Tgt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641160	3641160	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	69	862	0	ENST00000294008.3:c.2479G>C	p.Glu827Gln	p.E827Q	ENST00000294008	NM_032444.2	827	Gag/Cag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644745	67644745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	38	366	0	ENST00000264010.4:c.10G>A	p.Asp4Asn	p.D4N	ENST00000264010	NM_006565.3	4	Gat/Aat																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119998	70119998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	27	176	0	ENST00000245479.2:c.1000G>T	p.Val334Leu	p.V334L	ENST00000245479	NM_000346.3	334	Gtg/Ttg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130373	11130373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	56	507	1	ENST00000344626.4:c.2612C>A	p.Ala871Asp	p.A871D	ENST00000344626	NM_003072.3	871	gCc/gAc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967066	18967066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	63	624	0	ENST00000262803.5:c.1781G>A	p.Arg594Gln	p.R594Q	ENST00000262803	NM_002911.3	594	cGg/cAg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61721116	61721116	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	29	442	0	ENST00000401558.2:c.1158C>G	p.Phe386Leu	p.F386L	ENST00000401558	NM_003400.3	386	ttC/ttG																																																																															
CASP8	841	MSKCC	GRCh37	2	202149592	202149592	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	32	394	0	ENST00000358485.4:c.1033G>C	p.Asp345His	p.D345H	ENST00000358485	NM_001080125.1	345	Gac/Cac																																																																															
ATR	545	MSKCC	GRCh37	3	142281204	142281204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	24	316	0	ENST00000350721.4:c.1040G>T	p.Cys347Phe	p.C347F	ENST00000350721	NM_001184.3	347	tGc/tTc																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186507037	186507037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	40	205	0	ENST00000323963.5:c.1203G>A	p.Met401Ile	p.M401I	ENST00000323963		401	atG/atA																																																																															
TET2	54790	MSKCC	GRCh37	4	106155797	106155797	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	21	334	0	ENST00000380013.4:c.698A>G	p.Tyr233Cys	p.Y233C	ENST00000380013	NM_001127208.2	233	tAt/tGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517834	187517834	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	62	319	0	ENST00000441802.2:c.12860T>A	p.Phe4287Tyr	p.F4287Y	ENST00000441802	NM_005245.3	4287	tTt/tAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949114	151949114	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	44	388	0	ENST00000262189.6:c.1531G>C	p.Glu511Gln	p.E511Q	ENST00000262189	NM_170606.2	511	Gag/Cag																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978516	70978516	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	44	438	0	ENST00000276594.2:c.1137C>A	p.Ser379Arg	p.S379R	ENST00000276594	NM_024504.3	379	agC/agA																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738398	145738398	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	42	649	0	ENST00000428558.2:c.2587G>C	p.Glu863Gln	p.E863Q	ENST00000428558	NM_004260.3	863	Gag/Cag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738496	145738496	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	53	600	0	ENST00000428558.2:c.2489G>C	p.Arg830Thr	p.R830T	ENST00000428558	NM_004260.3	830	aGa/aCa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484327	8484327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	18	385	0	ENST00000356435.5:c.3205C>A	p.Gln1069Lys	p.Q1069K	ENST00000356435		1069	Cag/Aag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139404411	139404411	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0051428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	46	565	0	ENST00000277541.6:c.2743C>T	p.Pro915Ser	p.P915S	ENST00000277541	NM_017617.3	915	Ccg/Tcg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	25	449	0	ENST00000347630.2:c.397T>C	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	Ttc/Ctc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0051438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	99	453	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0051438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	83	287	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604778	48604778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767383		P-0051438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	64	285	1	ENST00000342988.3:c.1600C>T	p.Gln534Ter	p.Q534*	ENST00000342988	NM_005359.5	534	Cag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971127	21971128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTGG			P-0051438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	39	333	0	ENST00000304494.5:c.227_230dup	p.Leu78HisfsTer43	p.L78Hfs*43	ENST00000304494	NM_000077.4	77	act/acCCACt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0051454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	10	428	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0051454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	360	536	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11177096	11177096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	61	339	0	ENST00000361445.4:c.6981G>A	p.Met2327Ile	p.M2327I	ENST00000361445	NM_004958.3	2327	atG/atA																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0051454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	53	248	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0051454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	42	167	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118924	70118926	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0051454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	377	706	0	ENST00000245479.2:c.499_501del	p.Lys167del	p.K167del	ENST00000245479	NM_000346.3	166	AAG/-																																																																															
SMO	6608	MSKCC	GRCh37	7	128851931	128851931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	387	714	3	ENST00000249373.3:c.2003G>A	p.Arg668His	p.R668H	ENST00000249373	NM_005631.4	668	cGc/cAc																																																																															
MITF	4286	MSKCC	GRCh37	3	70014105	70014105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	36	416	0	ENST00000352241.4:c.1269G>C	p.Glu423Asp	p.E423D	ENST00000352241	NM_198159.2	423	gaG/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	308	633	0	ENST00000269305.4:c.770T>A	p.Leu257Gln	p.L257Q	ENST00000269305	NM_001126112.2	257	cTg/cAg																																																																															
EP300	2033	MSKCC	GRCh37	22	41573277	41573278	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0051457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	139	741	1	ENST00000263253.7:c.5564dup	p.Thr1856AsnfsTer27	p.T1856Nfs*27	ENST00000263253	NM_001429.3	1854	-/C																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0051459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	213	809	1	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	424	695	0	ENST00000269571.5:c.2329G>C	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ctg																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872556	35872556	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	49	369	0	ENST00000216797.5:c.347A>G	p.His116Arg	p.H116R	ENST00000216797	NM_020529.2	116	cAc/cGc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99193530	99193530	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	102	687	0	ENST00000074304.5:c.2725G>T	p.Glu909Ter	p.E909*	ENST00000074304	NM_001134224.1	909	Gag/Tag																																																																															
WT1	7490	MSKCC	GRCh37	11	32439169	32439169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1739	120	381	0	ENST00000332351.3:c.904G>A	p.Glu302Lys	p.E302K	ENST00000332351	NM_024426.4	302	Gaa/Aaa																																																																															
BLM	641	MSKCC	GRCh37	15	91337567	91337567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	26	182	0	ENST00000355112.3:c.3190G>A	p.Asp1064Asn	p.D1064N	ENST00000355112	NM_000057.2	1064	Gat/Aat																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781832	3781832	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	80	589	0	ENST00000262367.5:c.4835A>G	p.Asn1612Ser	p.N1612S	ENST00000262367	NM_004380.2	1612	aAc/aGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0051468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	44	268	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
PALB2	79728	MSKCC	GRCh37	16	23635360	23635360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	65	360	1	ENST00000261584.4:c.2804C>T	p.Ala935Val	p.A935V	ENST00000261584	NM_024675.3	935	gCt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579698	7579700	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ACC	ACC	-			P-0051468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	39	338	0	ENST00000269305.4:c.96_96+2del		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0051468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	64	178	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618630	37618630	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	GAT			P-0051468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	195	424	0	ENST00000447079.4:c.306delinsGAT	p.Asp103MetfsTer22	p.D103Mfs*22	ENST00000447079	NM_015083.1	102	tcA/tcGAT																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289247	33289247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	184	487	0	ENST00000374542.5:c.305C>T	p.Ser102Leu	p.S102L	ENST00000374542	NM_001141970.1	102	tCg/tTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42041125	42041125	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0051470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	288	375	0	ENST00000219905.7:c.5503G>A	p.Gly1835Arg	p.G1835R	ENST00000219905	NM_001164273.1	1835	Ggg/Agg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982440	25982440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	184	295	0	ENST00000435504.4:c.850C>G	p.Arg284Gly	p.R284G	ENST00000435504		284	Cga/Gga																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29090017	29090019	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CAC	CAC	AA			P-0051470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	103	154	1	ENST00000328354.6:c.1461+1_1461+3delinsTT		p.X487_splice	ENST00000328354	NM_007194.3	487																																																																																
ETV1	2115	MSKCC	GRCh37	7	13971370	13971370	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748346103		P-0051470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	170	266	0	ENST00000405192.2:c.559C>T	p.Arg187Cys	p.R187C	ENST00000405192	NM_001163147.1	187	Cgc/Tgc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376040	8376040	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	39	215	0	ENST00000356435.5:c.4557G>T	p.Trp1519Cys	p.W1519C	ENST00000356435		1519	tgG/tgT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0051472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	52	347	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877869	151877887	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGGTCCAGGAAGTTGGG	ACAGGTCCAGGAAGTTGGG	-			P-0051472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	43	363	0	ENST00000262189.6:c.7058_7076del	p.Ser2353CysfsTer6	p.S2353Cfs*6	ENST00000262189	NM_170606.2	2353	tCCCAACTTCCTGGACCTGTg/tg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259162	36259164	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0051472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	60	481	0	ENST00000300305.3:c.327_329del	p.Asn109del	p.N109del	ENST00000300305		109	aaCAAg/aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151876920	151876920	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0051472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	25	243	0	ENST00000262189.6:c.7441del	p.Arg2481AspfsTer34	p.R2481Dfs*34	ENST00000262189	NM_170606.2	2481	Aga/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0051476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	51	277	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0051476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	70	717	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0051476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	79	398	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0051476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	77	355	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175756	112175756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0051476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	70	312	0	ENST00000257430.4:c.4466del	p.Leu1489TyrfsTer18	p.L1489Yfs*18	ENST00000257430	NM_000038.5	1489	Tta/ta																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906330	50906330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	92	782	1	ENST00000440232.2:c.991C>T	p.Arg331Trp	p.R331W	ENST00000440232	NM_002691.3	331	Cgg/Tgg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982401	201982402	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0051476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	117	669	0	ENST00000359651.3:c.782_783del	p.Leu261ArgfsTer39	p.L261Rfs*39	ENST00000359651		260	tgTCtc/tgtc																																																																															
GNA11	2767	MSKCC	GRCh37	19	3119291	3119293	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0051476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	108	693	0	ENST00000078429.4:c.826_828del	p.Lys276del	p.K276del	ENST00000078429	NM_002067.2	275	AAG/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0051510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	87	460	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MED12	9968	MSKCC	GRCh37	X	70342425	70342425	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	140	630	0	ENST00000374080.3:c.1316G>A	p.Trp439Ter	p.W439*	ENST00000374080		439	tGg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0051552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	49	439	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	126	799	0	ENST00000269305.4:c.398T>G	p.Met133Arg	p.M133R	ENST00000269305	NM_001126112.2	133	aTg/aGg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549515	187549515	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	95	440	0	ENST00000441802.2:c.4603C>T	p.Arg1535Ter	p.R1535*	ENST00000441802	NM_005245.3	1535	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112162945	112162945	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0051552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	34	344	0	ENST00000257430.4:c.1548+1G>C		p.X516_splice	ENST00000257430	NM_000038.5	516																																																																																
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	37	457	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859199	151859200	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0051553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	26	341	0	ENST00000262189.6:c.11460+2dup		p.X3820_splice	ENST00000262189	NM_170606.2	3820																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44938417	44938418	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0051553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	28	201	0	ENST00000377967.4:c.2965_2966insG	p.Leu989CysfsTer5	p.L989Cfs*5	ENST00000377967	NM_021140.2	989	ttg/tGtg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0051555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	20	334	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0051555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	57	481	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0051557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	21	416	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900873	3900873	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	31	617	0	ENST00000262367.5:c.223C>T	p.Arg75Ter	p.R75*	ENST00000262367	NM_004380.2	75	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0051557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	43	436	0	ENST00000269305.4:c.375+1G>C		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
FLT3	2322	MSKCC	GRCh37	13	28602359	28602359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	15	509	0	ENST00000241453.7:c.2009G>A	p.Ser670Asn	p.S670N	ENST00000241453	NM_004119.2	670	aGc/aAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0051573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	100	428	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0051573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	45	202	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0051573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	148	600	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732911	30732911	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0051573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	49	262	0	ENST00000359013.4:c.1600-1G>T		p.X534_splice	ENST00000359013	NM_001024847.2	534																																																																																
PAK7	57144	MSKCC	GRCh37	20	9520152	9520152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	69	448	0	ENST00000353224.5:c.2117C>A	p.Pro706Gln	p.P706Q	ENST00000353224	NM_177990.2	706	cCg/cAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044988	47044988	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	126	296	0	ENST00000329236.7:c.2080G>T	p.Glu694Ter	p.E694*	ENST00000329236	NM_001204466.1	694	Gag/Tag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157469994	157469994	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	36	524	0	ENST00000346085.5:c.2788G>T	p.Gly930Ter	p.G930*	ENST00000346085	NM_020732.3	930	Gga/Tga																																																																															
MED12	9968	MSKCC	GRCh37	X	70342996	70342996	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	103	289	0	ENST00000374080.3:c.1537A>G	p.Ser513Gly	p.S513G	ENST00000374080		513	Agc/Ggc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5225803	5225803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	70	622	0	ENST00000357368.4:c.2429C>T	p.Ala810Val	p.A810V	ENST00000357368	NM_002850.3	810	gCc/gTc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	84	661	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72863738	72863738	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	100	576	0	ENST00000268489.5:c.3469G>T	p.Glu1157Ter	p.E1157*	ENST00000268489	NM_006885.3	1157	Gaa/Taa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	71	424	0	ENST00000347630.2:c.305T>C	p.Phe102Ser	p.F102S	ENST00000347630	NM_001007230.1	102	tTc/tCc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137320989	137320989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	74	637	2	ENST00000481739.1:c.946C>T	p.Arg316Cys	p.R316C	ENST00000481739	NM_002957.4	316	Cgc/Tgc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998544	100998544	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	131	355	0	ENST00000325455.5:c.1258G>C	p.Gly420Arg	p.G420R	ENST00000325455	NM_001202474.3	420	Ggg/Cgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	85	393	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0051588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	245	551	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118859	70118859	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0051588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	379	414	0	ENST00000245479.2:c.432-1G>A		p.X144_splice	ENST00000245479	NM_000346.3	144																																																																																
CASP8	841	MSKCC	GRCh37	2	202150030	202150030	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	67	480	0	ENST00000358485.4:c.1471C>T	p.Arg491Ter	p.R491*	ENST00000358485	NM_001080125.1	491	Cga/Tga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713544	30713546	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0051588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	165	497	0	ENST00000359013.4:c.946_948delAAG	p.Lys316del	p.K316del	ENST00000359013	NM_001024847.2	315	gAGAag/gag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0051588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	78	382	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	110	540	2	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247367	153247367	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	95	308	0	ENST00000281708.4:c.1435C>T	p.Arg479Ter	p.R479*	ENST00000281708	NM_033632.3	479	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0051588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	106	341	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047710	180047710	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144822344		P-0051588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	232	511	0	ENST00000261937.6:c.2305G>A	p.Glu769Lys	p.E769K	ENST00000261937	NM_182925.4	769	Gag/Aag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53225112	53225112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	249	254	0	ENST00000375401.3:c.3106G>A	p.Val1036Ile	p.V1036I	ENST00000375401	NM_004187.3	1036	Gtt/Att																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0051599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	43	322	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266112	41266112	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	51	383	0	ENST00000349496.5:c.109T>G	p.Ser37Ala	p.S37A	ENST00000349496	NM_001904.3	37	Tct/Gct																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281176	15281176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	78	664	1	ENST00000263388.2:c.5080C>T	p.Arg1694Trp	p.R1694W	ENST00000263388	NM_000435.2	1694	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260713	16260713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	85	584	1	ENST00000375759.3:c.7978G>A	p.Val2660Ile	p.V2660I	ENST00000375759	NM_015001.2	2660	Gtc/Atc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71947009	71947009	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0051599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	69	692	1	ENST00000298229.2:c.2860del	p.Glu954ArgfsTer4	p.E954Rfs*4	ENST00000298229	NM_001567.3	953	cGg/cg																																																																															
ATM	472	MSKCC	GRCh37	11	108196137	108196137	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	25	445	0	ENST00000278616.4:c.6673G>C	p.Ala2225Pro	p.A2225P	ENST00000278616	NM_000051.3	2225	Gct/Cct																																																																															
CARM1	10498	MSKCC	GRCh37	19	10982490	10982490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	11	103	0	ENST00000327064.4:c.112C>T	p.Leu38Phe	p.L38F	ENST00000327064	NM_199141.1	38	Ctc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0051635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	188	405	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577123	7577123	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs876660333		P-0051635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	204	553	0	ENST00000269305.4:c.815T>A	p.Val272Glu	p.V272E	ENST00000269305	NM_001126112.2	272	gTg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0051635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	63	272	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464920	120464920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	71	420	0	ENST00000256646.2:c.5152C>T	p.Arg1718Cys	p.R1718C	ENST00000256646	NM_024408.3	1718	Cgc/Tgc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748456	43748456	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	49	600	1	ENST00000382044.4:c.2350G>T	p.Glu784Ter	p.E784*	ENST00000382044	NM_001141980.1	784	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112164576	112164576	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0051635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	85	267	0	ENST00000257430.4:c.1652del	p.Leu551CysfsTer7	p.L551Cfs*7	ENST00000257430	NM_000038.5	550	aaT/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0051638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	129	257	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0051638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	1086	511	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2103346	2103346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	89	537	0	ENST00000219476.3:c.229G>A	p.Ala77Thr	p.A77T	ENST00000219476	NM_000548.3	77	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0051638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	94	553	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526792	31526792	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149389256		P-0051638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	92	604	2	ENST00000344624.3:c.248C>T	p.Pro83Leu	p.P83L	ENST00000344624		83	cCa/cTa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245357	53245357	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	128	502	0	ENST00000375401.3:c.680T>C	p.Ile227Thr	p.I227T	ENST00000375401	NM_004187.3	227	aTt/aCt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339201	65339201	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	43	343	0	ENST00000342505.4:c.335A>G	p.Tyr112Cys	p.Y112C	ENST00000342505	NM_002227.2	112	tAt/tGt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244175	46244175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	51	316	0	ENST00000334344.6:c.2269G>A	p.Val757Met	p.V757M	ENST00000334344	NM_152641.2	757	Gtg/Atg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118710	115118712	+	inframe_deletion	In_Frame_Del	DEL	TGG	TGG	-			P-0051638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	91	412	0	ENST00000257566.3:c.629_631del	p.Thr210del	p.T210del	ENST00000257566	NM_016569.3	210	aCCAac/aac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061168	38061169	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0051638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	226	255	0	ENST00000250448.2:c.820dupG	p.Ala274GlyfsTer19	p.A274Gfs*19	ENST00000250448	NM_004496.3	274	gcc/gGcc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905767	50905767	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	81	621	0	ENST00000440232.2:c.815A>C	p.Lys272Thr	p.K272T	ENST00000440232	NM_002691.3	272	aAa/aCa																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22160186	22160186	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	35	308	0	ENST00000215832.6:c.445G>C	p.Asp149His	p.D149H	ENST00000215832	NM_002745.4	149	Gac/Cac																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515150	31515150	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	101	684	0	ENST00000344624.3:c.1235G>A	p.Trp412Ter	p.W412*	ENST00000344624		412	tGg/tAg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	56	330	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																															
UPF1	5976	MSKCC	GRCh37	19	18958624	18958624	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	64	579	0	ENST00000262803.5:c.443G>C	p.Arg148Pro	p.R148P	ENST00000262803	NM_002911.3	148	cGt/cCt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430709	181430709	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	89	694	0	ENST00000325404.1:c.561T>A	p.Asn187Lys	p.N187K	ENST00000325404	NM_003106.3	187	aaT/aaA																																																																															
NBN	4683	MSKCC	GRCh37	8	90967713	90967713	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	13	331	0	ENST00000265433.3:c.1195G>C	p.Asp399His	p.D399H	ENST00000265433	NM_002485.4	399	Gat/Cat																																																																															
NBN	4683	MSKCC	GRCh37	8	90967740	90967740	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	11	302	0	ENST00000265433.3:c.1168G>C	p.Glu390Gln	p.E390Q	ENST00000265433	NM_002485.4	390	Gaa/Caa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023294	27023295	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	T			P-0051644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	66	59	0	ENST00000324856.7:c.400_401delinsT	p.Ala134CysfsTer98	p.A134Cfs*98	ENST00000324856	NM_006015.4	134	GCg/Tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0051644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	359	307	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024599	31024599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	147	275	0	ENST00000375687.4:c.4084G>A	p.Ala1362Thr	p.A1362T	ENST00000375687	NM_015338.5	1362	Gcc/Acc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38953616	38953616	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	65	120	0	ENST00000357387.3:c.2737G>C	p.Asp913His	p.D913H	ENST00000357387	NM_152756.3	913	Gat/Cat																																																																															
APC	324	MSKCC	GRCh37	5	112162839	112162839	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0051644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	196	180	0	ENST00000257430.4:c.1444del	p.Asp482ThrfsTer16	p.D482Tfs*16	ENST00000257430	NM_000038.5	481	gtG/gt																																																																															
APC	324	MSKCC	GRCh37	5	112175357	112175358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0051644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	144	109	0	ENST00000257430.4:c.4067dup	p.Gly1357ArgfsTer18	p.G1357Rfs*18	ENST00000257430	NM_000038.5	1356	tca/tCca																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894974	101894974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	89	118	0	ENST00000374994.4:c.527C>T	p.Thr176Met	p.T176M	ENST00000374994	NM_004612.2	176	aCg/aTg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136016	64136016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	157	614	1	ENST00000334205.4:c.1277G>A	p.Arg426His	p.R426H	ENST00000334205	NM_003942.2	426	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0051649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	91	559	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262073	10262073	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0051649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	73	441	0	ENST00000340748.4:c.2217+1G>C		p.X739_splice	ENST00000340748		739																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52620470	52620470	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	37	464	0	ENST00000394830.3:c.3283C>T	p.Arg1095Ter	p.R1095*	ENST00000394830	NM_018313.4	1095	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532891	187532891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	79	345	0	ENST00000441802.2:c.9502G>A	p.Ala3168Thr	p.A3168T	ENST00000441802	NM_005245.3	3168	Gct/Act																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962378	2962378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	77	600	0	ENST00000396946.4:c.2159G>A	p.Arg720Gln	p.R720Q	ENST00000396946	NM_032415.4	720	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175385	112175399	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCTCAGACACCCA	GTGCTCAGACACCCA	T			P-0051649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	87	247	0	ENST00000257430.4:c.4094_4108delinsT	p.Gly1365ValfsTer5	p.G1365Vfs*5	ENST00000257430	NM_000038.5	1365	gGTGCTCAGACACCCAaa/gTaa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120467992	120467992	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	187	704	0	ENST00000256646.2:c.4447C>G	p.Leu1483Val	p.L1483V	ENST00000256646	NM_024408.3	1483	Ctg/Gtg																																																																															
RET	5979	MSKCC	GRCh37	10	43600433	43600433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	123	585	1	ENST00000355710.3:c.659G>T	p.Ser220Ile	p.S220I	ENST00000355710	NM_020975.4	220	aGc/aTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0051651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	18	501	2	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912140	114912140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	90	528	0	ENST00000543371.1:c.1210C>T	p.Arg404Trp	p.R404W	ENST00000543371	NM_001198531.1	404	Cgg/Tgg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21623931	21623931	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	20	134	0	ENST00000421138.2:c.1769T>G	p.Val590Gly	p.V590G	ENST00000421138		590	gTg/gGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578490	7578490	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	234	868	0	ENST00000269305.4:c.440T>G	p.Val147Gly	p.V147G	ENST00000269305	NM_001126112.2	147	gTt/gGt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622362	1622362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	192	820	1	ENST00000344749.5:c.602C>T	p.Pro201Leu	p.P201L	ENST00000344749	NM_001136139.2	201	cCg/cTg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30311700	30311700	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	63	478	0	ENST00000262643.3:c.554A>T	p.Lys185Ile	p.K185I	ENST00000262643	NM_001238.2	185	aAa/aTa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918231	50918231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	66	723	1	ENST00000440232.2:c.2548C>T	p.Arg850Cys	p.R850C	ENST00000440232	NM_002691.3	850	Cgc/Tgc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664562	138664562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	55	151	0	ENST00000330315.3:c.1003C>T	p.Pro335Ser	p.P335S	ENST00000330315	NM_023067.3	335	Ccc/Tcc																																																																															
KDR	3791	MSKCC	GRCh37	4	55976837	55976837	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	289	533	2	ENST00000263923.4:c.1075C>A	p.Pro359Thr	p.P359T	ENST00000263923	NM_002253.2	359	Ccc/Acc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467918	66467918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	62	366	0	ENST00000273854.3:c.351G>T	p.Trp117Cys	p.W117C	ENST00000273854	NM_004439.5	117	tgG/tgT																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31508759	31508759	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	146	699	0	ENST00000344624.3:c.1556A>G	p.His519Arg	p.H519R	ENST00000344624		519	cAt/cGt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502294	157502294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	99	466	0	ENST00000346085.5:c.3327G>T	p.Glu1109Asp	p.E1109D	ENST00000346085	NM_020732.3	1109	gaG/gaT																																																																															
HGF	3082	MSKCC	GRCh37	7	81335645	81335645	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	71	545	0	ENST00000222390.5:c.1715A>G	p.Tyr572Cys	p.Y572C	ENST00000222390	NM_000601.4	572	tAt/tGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859452	151859452	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	85	510	0	ENST00000262189.6:c.11210A>T	p.Glu3737Val	p.E3737V	ENST00000262189	NM_170606.2	3737	gAg/gTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76909649	76909649	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	98	262	0	ENST00000373344.5:c.4256A>G	p.Tyr1419Cys	p.Y1419C	ENST00000373344	NM_000489.3	1419	tAt/tGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449743	8449744	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	T			P-0051651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	115	547	0	ENST00000356435.5:c.3969_3970delinsA	p.Asn1325ThrfsTer25	p.N1325Tfs*25	ENST00000356435		1323	cgCCtt/cgAtt																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216782	7216782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	25	452	0	ENST00000380728.2:c.641C>T	p.Ser214Leu	p.S214L	ENST00000380728		214	tCg/tTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115854	8115855	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCCTCCCTGAGCCACATCTCGCCCTTCAGCCACTCCAGCCACATGCTGACCACGCCCACGCCGA			P-0051674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	39	531	0	ENST00000346208.3:c.1202_1265dup	p.Met422IlefsTer106	p.M422Ifs*106	ENST00000346208		400	-/TCCTCCCTGAGCCACATCTCGCCCTTCAGCCACTCCAGCCACATGCTGACCACGCCCACGCCGA																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216401	7216401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	103	680	1	ENST00000380728.2:c.847C>T	p.Pro283Ser	p.P283S	ENST00000380728		283	Cct/Tct																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	76	292	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	121	293	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	150	328	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
MDM2	4193	MSKCC	GRCh37	12	69222593	69222593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	29	356	0	ENST00000462284.1:c.566G>A	p.Arg189His	p.R189H	ENST00000462284	NM_002392.5	189	cGc/cAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118885	70118885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	70	651	1	ENST00000245479.2:c.457C>T	p.Pro153Ser	p.P153S	ENST00000245479	NM_000346.3	153	Ccc/Tcc																																																																															
IDH1	3417	MSKCC	GRCh37	2	209110082	209110082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148190775		P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	79	458	0	ENST00000345146.2:c.481G>A	p.Gly161Arg	p.G161R	ENST00000345146	NM_005896.2	161	Gga/Aga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	196	702	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																															
EP300	2033	MSKCC	GRCh37	22	41545061	41545061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	67	418	0	ENST00000263253.7:c.2261G>A	p.Arg754His	p.R754H	ENST00000263253	NM_001429.3	754	cGt/cAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715685	30715685	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	76	280	0	ENST00000359013.4:c.1418A>G	p.Tyr473Cys	p.Y473C	ENST00000359013	NM_001024847.2	473	tAc/tGc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909698	50909698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	220	743	0	ENST00000440232.2:c.1418C>T	p.Thr473Met	p.T473M	ENST00000440232	NM_002691.3	473	aCg/aTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778821	3778821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	228	771	0	ENST00000262367.5:c.6227C>T	p.Ser2076Leu	p.S2076L	ENST00000262367	NM_004380.2	2076	tCg/tTg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	41	801	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458869	120458869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	43	608	0	ENST00000256646.2:c.6476C>T	p.Thr2159Met	p.T2159M	ENST00000256646	NM_024408.3	2159	aCg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445500	49445500	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	70	653	0	ENST00000301067.7:c.1966delC	p.Leu656CysfsTer274	p.L656Cfs*274	ENST00000301067	NM_003482.3	656	Ctg/tg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523731	176523731	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	53	607	1	ENST00000292408.4:c.2147del	p.Pro716GlnfsTer6	p.P716Qfs*6	ENST00000292408	NM_213647.1	714	tgC/tg																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56801430	56801430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	113	394	0	ENST00000337432.4:c.934C>T	p.Arg312Trp	p.R312W	ENST00000337432	NM_058216.2	312	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223190	36223190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	257	854	0	ENST00000222270.7:c.5740C>T	p.Arg1914Cys	p.R1914C	ENST00000222270	NM_014727.1	1914	Cgt/Tgt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223614	36223614	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	64	860	2	ENST00000222270.7:c.6169delC	p.Arg2057AlafsTer34	p.R2057Afs*34	ENST00000222270	NM_014727.1	2055	gCc/gc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163309259	163309260	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	40	295	0	ENST00000271452.3:c.604dup	p.Thr202AsnfsTer24	p.T202Nfs*24	ENST00000271452	NM_145697.2	200	caa/cAaa																																																																															
MST1R	4486	MSKCC	GRCh37	3	49924823	49924823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	78	780	1	ENST00000296474.3:c.4120C>T	p.Arg1374Cys	p.R1374C	ENST00000296474	NM_002447.2	1374	Cgt/Tgt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151849900	151849900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	93	330	0	ENST00000262189.6:c.12416G>A	p.Arg4139Gln	p.R4139Q	ENST00000262189	NM_170606.2	4139	cGa/cAa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670328	134670328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	122	387	0	ENST00000398015.3:c.239G>A	p.Arg80Gln	p.R80Q	ENST00000398015	NM_004441.4	80	cGg/cAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141562	11141562	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	78	636	0	ENST00000344626.4:c.3539C>A	p.Pro1180His	p.P1180H	ENST00000344626	NM_003072.3	1180	cCt/cAt																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39325150	39325150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	59	504	0	ENST00000373001.3:c.169G>A	p.Ala57Thr	p.A57T	ENST00000373001	NM_022157.3	57	Gct/Act																																																																															
DICER1	23405	MSKCC	GRCh37	14	95556891	95556891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	86	327	1	ENST00000343455.3:c.5713G>A	p.Ala1905Thr	p.A1905T	ENST00000343455	NM_177438.2	1905	Gca/Aca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435674	56435674	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	163	649	0	ENST00000407977.2:c.1463del	p.Gln488ArgfsTer14	p.Q488Rfs*14	ENST00000407977		488	cAg/cg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78727912	78727912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	103	474	1	ENST00000306801.3:c.757C>T	p.Pro253Ser	p.P253S	ENST00000306801	NM_020761.2	253	Ccc/Tcc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226253	2226253	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	67	882	0	ENST00000398665.3:c.3733T>C	p.Phe1245Leu	p.F1245L	ENST00000398665	NM_032482.2	1245	Ttc/Ctc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967038	18967038	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	173	568	0	ENST00000262803.5:c.1756del	p.Glu586SerfsTer13	p.E586Sfs*13	ENST00000262803	NM_002911.3	585	Ggg/gg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967071	18967071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	245	650	0	ENST00000262803.5:c.1786C>T	p.Arg596Trp	p.R596W	ENST00000262803	NM_002911.3	596	Cgg/Tgg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702337	47702337	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	157	351	0	ENST00000233146.2:c.1933C>T	p.Gln645Ter	p.Q645*	ENST00000233146	NM_000251.2	645	Caa/Taa																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119631562	119631562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	107	262	0	ENST00000316626.5:c.704C>T	p.Thr235Ile	p.T235I	ENST00000316626		235	aCc/aTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153253746	153253746	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	19	254	0	ENST00000281708.4:c.985+2T>C		p.X329_splice	ENST00000281708	NM_033632.3	329																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32190819	32190819	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	96	772	0	ENST00000375023.3:c.118A>G	p.Thr40Ala	p.T40A	ENST00000375023	NM_004557.3	40	Acc/Gcc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138197252	138197252	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	27	318	0	ENST00000237289.4:c.754T>C	p.Tyr252His	p.Y252H	ENST00000237289	NM_001270507.1	252	Tat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	240	277	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0051719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	266	784	1	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																															
APC	324	MSKCC	GRCh37	5	112175182	112175182	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0051725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	22	100	0	ENST00000257430.4:c.3892del	p.Ser1298LeufsTer7	p.S1298Lfs*7	ENST00000257430	NM_000038.5	1297	gaT/ga																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0051725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	22	96	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120124	70120124	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	68	178	0	ENST00000245479.2:c.1126C>T	p.Gln376Ter	p.Q376*	ENST00000245479	NM_000346.3	376	Cag/Tag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63816875	63816875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0051725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	34	96	0	ENST00000279873.7:c.847-1G>A		p.X283_splice	ENST00000279873	NM_032199.2	283																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11141455	11141458	+	frameshift_variant	Frame_Shift_Del	DEL	GCCC	GCCC	-			P-0051725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	142	642	0	ENST00000344626.4:c.3433_3436del	p.Pro1145AlafsTer18	p.P1145Afs*18	ENST00000344626	NM_003072.3	1144	gaGCCC/ga																																																																															
SOS1	6654	MSKCC	GRCh37	2	39234301	39234304	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0051725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	44	54	0	ENST00000402219.2:c.2541_2544del	p.Arg848Ter	p.R848*	ENST00000402219	NM_005633.3	847	gaAAGA/ga																																																																															
XPO1	7514	MSKCC	GRCh37	2	61726040	61726040	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	31	75	0	ENST00000401558.2:c.599A>G	p.Asn200Ser	p.N200S	ENST00000401558	NM_003400.3	200	aAt/aGt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155046	55155046	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	53	435	0	ENST00000257290.5:c.2755G>C	p.Asp919His	p.D919H	ENST00000257290	NM_006206.4	919	Gac/Cac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332882	153332882	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0051729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	82	201	0	ENST00000281708.4:c.74C>G	p.Ser25Ter	p.S25*	ENST00000281708	NM_033632.3	25	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0051422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	403	686	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0051422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	168	294	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40911143	40911143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	80	407	1	ENST00000373198.4:c.2162G>A	p.Arg721His	p.R721H	ENST00000373198	NM_133170.3	721	cGt/cAt																																																																															
KIT	3815	MSKCC	GRCh37	4	55564515	55564515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	129	437	0	ENST00000288135.5:c.403C>T	p.Arg135Cys	p.R135C	ENST00000288135	NM_000222.2	135	Cgc/Tgc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911568	32911568	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	50	327	0	ENST00000380152.3:c.3076A>G	p.Lys1026Glu	p.K1026E	ENST00000380152		1026	Aag/Gag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0051698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	144	398	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0051698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	191	361	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572033	64572033	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	418	640	0	ENST00000337652.1:c.1621C>T	p.Gln541Ter	p.Q541*	ENST00000337652	NM_130803.2	541	Cag/Tag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212578349	212578349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	235	340	0	ENST00000342788.4:c.908C>T	p.Ser303Phe	p.S303F	ENST00000342788	NM_005235.2	303	tCt/tTt																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870849	12870849	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	142	225	0	ENST00000228872.4:c.78del	p.Ser27ArgfsTer15	p.S27Rfs*15	ENST00000228872	NM_004064.3	26	Ccc/cc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133862	41133862	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	180	396	0	ENST00000379561.5:c.1766G>C	p.Arg589Thr	p.R589T	ENST00000379561	NM_002015.3	589	aGa/aCa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23652442	23652442	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0051698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	411	737	0	ENST00000261584.4:c.37G>T	p.Glu13Ter	p.E13*	ENST00000261584	NM_024675.3	13	Gag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151856073	151856073	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	257	393	0	ENST00000262189.6:c.11545C>T	p.Gln3849Ter	p.Q3849*	ENST00000262189	NM_170606.2	3849	Cag/Tag																																																																															
ATRX	546	MSKCC	GRCh37	X	76937480	76937480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	81	427	0	ENST00000373344.5:c.3268G>A	p.Glu1090Lys	p.E1090K	ENST00000373344	NM_000489.3	1090	Gag/Aag																																																																															
XIAP	331	MSKCC	GRCh37	X	123025146	123025146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	97	333	0	ENST00000355640.3:c.1036C>T	p.His346Tyr	p.H346Y	ENST00000355640		346	Cat/Tat																																																																															
XIAP	331	MSKCC	GRCh37	X	123026588	123026588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	152	379	0	ENST00000355640.3:c.1064C>T	p.Thr355Ile	p.T355I	ENST00000355640		355	aCt/aTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0051701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	130	536	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0051727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	29	478	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307414	118307416	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-			P-0051727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	11	23	0	ENST00000534358.1:c.200_202delCGG	p.Ala67del	p.A67del	ENST00000534358	NM_005933.3	63	GCG/-																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188165	11188165	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	29	426	0	ENST00000361445.4:c.5929A>G	p.Thr1977Ala	p.T1977A	ENST00000361445	NM_004958.3	1977	Aca/Gca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	21	510	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
JUN	3725	MSKCC	GRCh37	1	59248061	59248061	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	18	387	0	ENST00000371222.2:c.682del	p.Glu228SerfsTer33	p.E228Sfs*33	ENST00000371222	NM_002228.3	228	Gag/ag																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156834552	156834552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	38	723	0	ENST00000524377.1:c.320C>T	p.Ala107Val	p.A107V	ENST00000524377	NM_002529.3	107	gCg/gTg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193110997	193110997	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	24	216	0	ENST00000367435.3:c.530T>C	p.Met177Thr	p.M177T	ENST00000367435	NM_024529.4	177	aTg/aCg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193117069	193117069	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	41	311	0	ENST00000367435.3:c.802C>T	p.Arg268Ter	p.R268*	ENST00000367435	NM_024529.4	268	Cga/Tga																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683208	88683209	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	20	389	0	ENST00000372037.3:c.1426_1427dup	p.Lys477SerfsTer22	p.K477Sfs*22	ENST00000372037	NM_004329.2	473	gtt/gtTGt																																																																															
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	45	443	0	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307238	118307238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	18	203	1	ENST00000534358.1:c.11G>A	p.Ser4Asn	p.S4N	ENST00000534358	NM_005933.3	4	aGc/aAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	50	400	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	25	465	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911131	32911131	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	19	406	0	ENST00000380152.3:c.2639A>G	p.Glu880Gly	p.E880G	ENST00000380152		880	gAa/gGa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437427	110437427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	50	375	0	ENST00000375856.3:c.974A>G	p.His325Arg	p.H325R	ENST00000375856	NM_003749.2	325	cAc/cGc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38591625	38591642	+	inframe_deletion	In_Frame_Del	DEL	TGGTGGATGGTTACCACT	TGGTGGATGGTTACCACT	-			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	36	467	0	ENST00000299084.4:c.87_104del	p.Trp31_Gly36del	p.W31_G36del	ENST00000299084	NM_152594.2	28	agTGGTGGATGGTTACCACTt/agt																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	101	518	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30129408	30129408	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200652640		P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	27	575	0	ENST00000263025.4:c.620C>T	p.Thr207Met	p.T207M	ENST00000263025	NM_002746.2	207	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822585	72822586	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	27	513	2	ENST00000268489.5:c.9589dupC	p.Gln3197ProfsTer42	p.Q3197Pfs*42	ENST00000268489	NM_006885.3	3197	cag/cCag																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	62	561	2	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	56	525	1	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
MSI2	124540	MSKCC	GRCh37	17	55693397	55693397	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	84	629	0	ENST00000284073.2:c.604G>T	p.Gly202Ter	p.G202*	ENST00000284073	NM_138962.2	202	Gga/Tga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	34	341	0	ENST00000307078.5:c.1214_1215delAG	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231449	5231449	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	68	656	3	ENST00000357368.4:c.2027del	p.Pro676ArgfsTer134	p.P676Rfs*134	ENST00000357368	NM_002850.3	676	cCg/cg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272337	15272337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs776990686		P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	73	739	3	ENST00000263388.2:c.6102del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2034	ccC/cc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15378304	15378305	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	37	415	0	ENST00000263377.2:c.481dup	p.Ile161AsnfsTer3	p.I161Nfs*3	ENST00000263377	NM_058243.2	161	ata/aAta																																																																															
CIC	23152	MSKCC	GRCh37	19	42794441	42794441	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	72	888	4	ENST00000575354.2:c.1526delC	p.Pro509HisfsTer14	p.P509Hfs*14	ENST00000575354	NM_015125.3	507	cgC/cg																																																																															
ALK	238	MSKCC	GRCh37	2	29430109	29430109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	33	502	1	ENST00000389048.3:c.3866C>T	p.Ala1289Val	p.A1289V	ENST00000389048	NM_004304.4	1289	gCc/gTc																																																																															
ALK	238	MSKCC	GRCh37	2	29543652	29543652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	19	593	0	ENST00000389048.3:c.1511G>T	p.Arg504Met	p.R504M	ENST00000389048	NM_004304.4	504	aGg/aTg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39250247	39250247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	21	681	0	ENST00000402219.2:c.1322G>A	p.Cys441Tyr	p.C441Y	ENST00000402219	NM_005633.3	441	tGt/tAt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37045935	37045935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	63	462	0	ENST00000231790.2:c.350C>T	p.Thr117Met	p.T117M	ENST00000231790	NM_000249.3	117	aCg/aTg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52623220	52623220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	43	343	0	ENST00000394830.3:c.2831A>G	p.His944Arg	p.H944R	ENST00000394830	NM_018313.4	944	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	65	312	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748155	41748155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	14	331	0	ENST00000226382.2:c.614C>A	p.Thr205Asn	p.T205N	ENST00000226382	NM_003924.3	205	aCc/aAc																																																																															
KDR	3791	MSKCC	GRCh37	4	55987301	55987301	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	60	437	0	ENST00000263923.4:c.124A>G	p.Thr42Ala	p.T42A	ENST00000263923	NM_002253.2	42	Aca/Gca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557259	187557259	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	10	518	0	ENST00000441802.2:c.4103T>G	p.Met1368Arg	p.M1368R	ENST00000441802	NM_005245.3	1368	aTg/aGg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	19	270	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112177863	112177864	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	14	265	0	ENST00000257430.4:c.6579dup	p.Val2194SerfsTer3	p.V2194Sfs*3	ENST00000257430	NM_000038.5	2191	gga/ggAa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046674	180046674	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	31	799	1	ENST00000261937.6:c.2638A>G	p.Met880Val	p.M880V	ENST00000261937	NM_182925.4	880	Atg/Gtg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29913009	29913009	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	76	518	0	ENST00000376809.5:c.1046-2A>G		p.X349_splice	ENST00000376809	NM_002116.7	349																																																																																
TAP2	6891	MSKCC	GRCh37	6	32798150	32798150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	73	613	0	ENST00000374899.4:c.1529G>A	p.Ser510Asn	p.S510N	ENST00000374899	NM_018833.2	510	aGc/aAc																																																																															
NBN	4683	MSKCC	GRCh37	8	90982744	90982744	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	22	294	0	ENST00000265433.3:c.744A>C	p.Glu248Asp	p.E248D	ENST00000265433	NM_002485.4	248	gaA/gaC																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44937657	44937657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	26	191	1	ENST00000377967.4:c.2845C>T	p.Arg949Cys	p.R949C	ENST00000377967	NM_021140.2	949	Cgt/Tgt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	39	367	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112157646	112157647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0051435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	279	414	0	ENST00000257430.4:c.1369dup	p.Ser457PhefsTer3	p.S457Ffs*3	ENST00000257430	NM_000038.5	456	ctt/cTtt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0051313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	124	366	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0051313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	95	604	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
FLT3	2322	MSKCC	GRCh37	13	28601375	28601375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	46	328	0	ENST00000241453.7:c.2057C>A	p.Pro686Gln	p.P686Q	ENST00000241453	NM_004119.2	686	cCa/cAa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964082	28964082	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	45	418	0	ENST00000282397.4:c.1820A>C	p.Gln607Pro	p.Q607P	ENST00000282397	NM_002019.4	607	cAa/cCa																																																																															
INHA	3623	MSKCC	GRCh37	2	220439512	220439512	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	78	708	0	ENST00000243786.2:c.365G>T	p.Arg122Leu	p.R122L	ENST00000243786	NM_002191.3	122	cGc/cTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188374	32188374	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	54	596	0	ENST00000375023.3:c.967C>G	p.Pro323Ala	p.P323A	ENST00000375023	NM_004557.3	323	Ccc/Gcc																																																																															
FYN	2534	MSKCC	GRCh37	6	112015704	112015704	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	47	495	0	ENST00000368678.4:c.1138C>G	p.Arg380Gly	p.R380G	ENST00000368678		380	Cgc/Ggc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138201325	138201325	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	56	442	0	ENST00000237289.4:c.2024A>G	p.Gln675Arg	p.Q675R	ENST00000237289	NM_001270507.1	675	cAg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249037	55249038	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0050016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			685	179	720	0	ENST00000275493.2:c.2335_2336delinsTT	p.Gly779Phe	p.G779F	ENST00000275493	NM_005228.3	779	GGc/TTc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913628	32913628	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			330	23	356	0	ENST00000380152.3:c.5138del	p.Asn1713IlefsTer12	p.N1713Ifs*12	ENST00000380152		1712	ggA/gg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	34	510	3	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0050471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	43	465	0	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
NF1	4763	MSKCC	GRCh37	17	29667552	29667552	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	19	0	0	ENST00000358273.4:c.6951G>A	p.Trp2317Ter	p.W2317*	ENST00000358273	NM_001042492.2	2317	tgG/tgA																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750842	57750842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	17	0	0	ENST00000274289.3:c.1762G>T	p.Asp588Tyr	p.D588Y	ENST00000274289	NM_006622.3	588	Gat/Tat																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597400	10597401	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0050471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	55	560	1	ENST00000171111.5:c.1802_1803delinsTT	p.Arg601Leu	p.R601L	ENST00000171111	NM_203500.1	601	cGG/cTT																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935703	13935703	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	30	359	0	ENST00000405192.2:c.1153G>T	p.Glu385Ter	p.E385*	ENST00000405192	NM_001163147.1	385	Gag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100186	27100186	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	27	383	0	ENST00000324856.7:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000324856	NM_006015.4	1328	Cag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391024	89391024	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	27	572	0	ENST00000336596.2:c.1095delA	p.Lys365AsnfsTer6	p.K365Nfs*6	ENST00000336596	NM_005233.5	364	Aaa/aa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	36	945	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	19	325	3	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	34	364	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517202		P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	23	423	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	30	859	2	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250883	153250883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	36	368	1	ENST00000281708.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000281708	NM_033632.3	393	Cga/Tga																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	27	329	0	ENST00000303115.3:c.361delA	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	35	304	4	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380279	25380279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	32	463	0	ENST00000256078.4:c.179G>A	p.Gly60Asp	p.G60D	ENST00000256078	NM_033360.2	60	gGt/gAt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46262309	46262309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	27	550	0	ENST00000371998.3:c.893G>A	p.Arg298Gln	p.R298Q	ENST00000371998		298	cGa/cAa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226308	2226308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	61	1078	2	ENST00000326181.6:c.1921C>T	p.Arg641Cys	p.R641C	ENST00000326181	NM_032271.2	641	Cgt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426774	49426774	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1334139538		P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	28	447	3	ENST00000301067.7:c.11714A>T	p.Gln3905Leu	p.Q3905L	ENST00000301067	NM_003482.3	3905	cAg/cTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112190	115112190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	36	749	1	ENST00000257566.3:c.1550C>T	p.Pro517Leu	p.P517L	ENST00000257566	NM_016569.3	517	cCg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431722	49431722	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	44	1033	0	ENST00000301067.7:c.9417del	p.Lys3140ArgfsTer2	p.K3140Rfs*2	ENST00000301067	NM_003482.3	3139	ccC/cc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033193	69033193	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	23	500	0	ENST00000288368.4:c.3637del	p.Arg1213GlyfsTer31	p.R1213Gfs*31	ENST00000288368	NM_024870.2	1211	ccA/cc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478927	56478927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	45	798	1	ENST00000267101.3:c.383G>A	p.Ser128Asn	p.S128N	ENST00000267101	NM_001982.3	128	aGc/aAc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31493321	31493322	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	20	366	0	ENST00000344624.3:c.1834dupC	p.Leu612ProfsTer8	p.L612Pfs*8	ENST00000344624		612	ctg/cCtg																																																																															
NF1	4763	MSKCC	GRCh37	17	29559777	29559777	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	21	324	1	ENST00000358273.4:c.3374C>T	p.Ala1125Val	p.A1125V	ENST00000358273	NM_001042492.2	1125	gCg/gTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467590	66467590	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746706656		P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	24	378	0	ENST00000273854.3:c.679C>T	p.Arg227Cys	p.R227C	ENST00000273854	NM_004439.5	227	Cgt/Tgt																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29095881	29095881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143611747		P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	53	689	0	ENST00000328354.6:c.953G>A	p.Arg318His	p.R318H	ENST00000328354	NM_007194.3	318	cGc/cAc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37050349	37050349	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	27	398	0	ENST00000231790.2:c.503del	p.Asn168IlefsTer34	p.N168Ifs*34	ENST00000231790	NM_000249.3	166	ttA/tt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23635355	23635355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	29	500	0	ENST00000261584.4:c.2809G>A	p.Gly937Arg	p.G937R	ENST00000261584	NM_024675.3	937	Gga/Aga																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2213894	2213896	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	89	1064	3	ENST00000398665.3:c.1708_1710del	p.Glu570del	p.E570del	ENST00000398665	NM_032482.2	569	aAGGag/aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938875	178938875	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	11	96	0	ENST00000263967.3:c.2117T>A	p.Val706Asp	p.V706D	ENST00000263967	NM_006218.2	706	gTc/gAc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1961391	1961391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	38	710	0	ENST00000382891.5:c.3179G>A	p.Arg1060His	p.R1060H	ENST00000382891	NM_133335.3	1060	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112151229	112151229	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	30	447	0	ENST00000257430.4:c.875del	p.Leu292Ter	p.L292*	ENST00000257430	NM_000038.5	291	gTt/gt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435879	149435879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	48	824	0	ENST00000286301.3:c.2345G>A	p.Arg782His	p.R782H	ENST00000286301	NM_005211.3	782	cGt/cAt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983086	201983086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	129	781	0	ENST00000359651.3:c.935C>T	p.Ala312Val	p.A312V	ENST00000359651		312	gCc/gTc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138924	64138924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	26	687	0	ENST00000334205.4:c.2291G>A	p.Arg764Gln	p.R764Q	ENST00000334205	NM_003942.2	764	cGa/cAa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948266	71948266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	52	1034	1	ENST00000298229.2:c.2978C>T	p.Pro993Leu	p.P993L	ENST00000298229	NM_001567.3	993	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380207	25380207	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	29	433	0	ENST00000256078.4:c.251T>C	p.Ile84Thr	p.I84T	ENST00000256078	NM_033360.2	84	aTa/aCa																																																																															
MSI1	4440	MSKCC	GRCh37	12	120806041	120806041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	49	901	1	ENST00000257552.2:c.136G>A	p.Val46Met	p.V46M	ENST00000257552	NM_002442.3	46	Gtg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993134	72993134	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	70	906	0	ENST00000268489.5:c.911A>T	p.Asp304Val	p.D304V	ENST00000268489	NM_006885.3	304	gAc/gTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276789	15276789	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	38	971	1	ENST00000263388.2:c.5476T>C	p.Cys1826Arg	p.C1826R	ENST00000263388	NM_000435.2	1826	Tgc/Cgc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52719263	52719263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	29	713	1	ENST00000322088.6:c.929G>A	p.Cys310Tyr	p.C310Y	ENST00000322088	NM_014225.5	310	tGt/tAt																																																																															
RHOA	387	MSKCC	GRCh37	3	49400033	49400033	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	27	614	1	ENST00000418115.1:c.304G>T	p.Glu102Ter	p.E102*	ENST00000418115	NM_001664.2	102	Gaa/Taa																																																																															
MST1R	4486	MSKCC	GRCh37	3	49927456	49927456	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	67	1016	0	ENST00000296474.3:c.3848G>T	p.Arg1283Leu	p.R1283L	ENST00000296474	NM_002447.2	1283	cGg/cTg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798184	32798184	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	49	788	0	ENST00000374899.4:c.1495A>G	p.Thr499Ala	p.T499A	ENST00000374899	NM_018833.2	499	Acg/Gcg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152415693	152415693	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	35	634	0	ENST00000206249.3:c.1543A>G	p.Arg515Gly	p.R515G	ENST00000206249	NM_000125.3	515	Agg/Ggg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099414	157099415	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCAGCAGCAA			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	13	389	0	ENST00000346085.5:c.363_374dup	p.Gln128_Gln131dup	p.Q128_Q131dup	ENST00000346085	NM_020732.3	128	-/CAGCAGCAGCAA																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739069	145739069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	38	641	0	ENST00000428558.2:c.2086C>T	p.Arg696Cys	p.R696C	ENST00000428558	NM_004260.3	696	Cgt/Tgt																																																																															
TEK	7010	MSKCC	GRCh37	9	27209203	27209203	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	36	537	0	ENST00000380036.4:c.2660A>G	p.Asn887Ser	p.N887S	ENST00000380036	NM_000459.3	887	aAt/aGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	70	554	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0050834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	254	1131	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371942	55371942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	231	666	1	ENST00000297316.4:c.632C>T	p.Ala211Val	p.A211V	ENST00000297316	NM_022454.3	211	gCg/gTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120351	70120352	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	252	1041	0	ENST00000245479.2:c.1354dupT	p.Tyr452LeufsTer126	p.Y452Lfs*126	ENST00000245479	NM_000346.3	451	-/T																																																																															
CD79A	973	MSKCC	GRCh37	19	42383338	42383338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	41	799	0	ENST00000221972.3:c.358G>A	p.Gly120Ser	p.G120S	ENST00000221972	NM_021601.3	120	Ggc/Agc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710666	114710666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	95	512	0	ENST00000543371.1:c.151G>A	p.Glu51Lys	p.E51K	ENST00000543371	NM_001198531.1	51	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	36	490	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	67	1021	0	ENST00000269305.4:c.403delT	p.Cys135AlafsTer35	p.C135Afs*35	ENST00000269305	NM_001126112.2	135	Tgc/gc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851762	134851762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	63	798	0	ENST00000398015.3:c.1168C>T	p.Arg390Cys	p.R390C	ENST00000398015	NM_004441.4	390	Cgc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0050839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	682	834	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0050839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	146	917	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101908816	101908816	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	141	566	0	ENST00000374994.4:c.1180G>T	p.Glu394Ter	p.E394*	ENST00000374994	NM_004612.2	394	Gaa/Taa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032458	12032459	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	122	541	0	ENST00000353533.5:c.894_895insA	p.Glu299ArgfsTer14	p.E299Rfs*14	ENST00000353533	NM_003010.3	298	-/A																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246027164	246027164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	72	702	0	ENST00000388985.4:c.838G>A	p.Glu280Lys	p.E280K	ENST00000388985		280	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0050846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	33	361	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0050846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	109	735	0	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175951	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	50	233	0	ENST00000257430.4:c.4660G>T	p.Glu1554Ter	p.E1554*	ENST00000257430	NM_000038.5	1554	Gaa/Taa																																																																															
PGR	5241	MSKCC	GRCh37	11	100999077	100999077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	88	808	0	ENST00000325455.5:c.725G>A	p.Arg242Gln	p.R242Q	ENST00000325455	NM_001202474.3	242	cGg/cAg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209104604	209104604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	48	440	1	ENST00000345146.2:c.974C>T	p.Thr325Met	p.T325M	ENST00000345146	NM_005896.2	325	aCg/aTg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374908	45374908	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	90	513	0	ENST00000262160.6:c.935G>C	p.Cys312Ser	p.C312S	ENST00000262160	NM_005901.5	312	tGc/tCc																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045979	26045979	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	107	509	0	ENST00000540144.1:c.341A>C	p.His114Pro	p.H114P	ENST00000540144	NM_003531.2	114	cAc/cCc																																																																															
TET1	80312	MSKCC	GRCh37	10	70404719	70404719	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	91	362	0	ENST00000373644.4:c.2233C>T	p.Arg745Ter	p.R745*	ENST00000373644	NM_030625.2	745	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108160365	108160365	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	38	315	1	ENST00000278616.4:c.4273C>T	p.Gln1425Ter	p.Q1425*	ENST00000278616	NM_000051.3	1425	Caa/Taa																																																																															
ETV6	2120	MSKCC	GRCh37	12	11905480	11905480	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	61	409	0	ENST00000396373.4:c.130G>C	p.Glu44Gln	p.E44Q	ENST00000396373	NM_001987.4	44	Gag/Cag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686349	30686349	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	81	395	0	ENST00000359013.4:c.280A>G	p.Ser94Gly	p.S94G	ENST00000359013	NM_001024847.2	94	Agc/Ggc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589577	67589687	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAAATTACATGAATATAACACTCAGTTTCAAGAAAAAAGTCGAGAATATGATAGATTATATGAAGAATATACCCGCACATCCCAGGTGAGTTTTCTATGAAAATCAGATT	AAAAATTACATGAATATAACACTCAGTTTCAAGAAAAAAGTCGAGAATATGATAGATTATATGAAGAATATACCCGCACATCCCAGGTGAGTTTTCTATGAAAATCAGATT	-			P-0050846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	18	207	0	ENST00000274335.5:c.1345_1425+30del		p.X449_splice	ENST00000274335		449																																																																																
PREX2	80243	MSKCC	GRCh37	8	69020392	69020392	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	83	495	0	ENST00000288368.4:c.2764A>C	p.Lys922Gln	p.K922Q	ENST00000288368	NM_024870.2	922	Aaa/Caa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	178	427	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603044	48603044	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	62	411	0	ENST00000342988.3:c.1345C>T	p.Gln449Ter	p.Q449*	ENST00000342988	NM_005359.5	449	Cag/Tag																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038956	12038967	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCAGGTAGCAC	TTCAGGTAGCAC	-			P-0050847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	105	292	0	ENST00000396373.4:c.1252_1253+10del		p.X418_splice	ENST00000396373	NM_001987.4	418																																																																																
RET	5979	MSKCC	GRCh37	10	43610099	43610099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	239	775	2	ENST00000355710.3:c.2051C>T	p.Pro684Leu	p.P684L	ENST00000355710	NM_020975.4	684	cCg/cTg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482861	67482861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	335	480	0	ENST00000327367.4:c.1265C>T	p.Ser422Phe	p.S422F	ENST00000327367	NM_005902.3	422	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0050848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	240	590	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980849	40980849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	174	541	0	ENST00000373198.4:c.1637G>A	p.Arg546Gln	p.R546Q	ENST00000373198	NM_133170.3	546	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175130	112175145	+	frameshift_variant	Frame_Shift_Del	DEL	TGTCATCAGCTGAAGA	TGTCATCAGCTGAAGA	-			P-0050848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	121	239	0	ENST00000257430.4:c.3841_3856del	p.Ser1281LysfsTer2	p.S1281Kfs*2	ENST00000257430	NM_000038.5	1280	tTGTCATCAGCTGAAGAt/tt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	91	452	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	30	390	0	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	64	455	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	28	329	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	38	305	1	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	111	531	2	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	247	894	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	25	524	2	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	121	409	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144146	11144146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	73	770	0	ENST00000344626.4:c.3727C>T	p.Arg1243Trp	p.R1243W	ENST00000344626	NM_003072.3	1243	Cgg/Tgg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	31	277	0	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523009	25523009	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	144	831	2	ENST00000264709.3:c.176delC	p.Pro59ArgfsTer13	p.P59Rfs*13	ENST00000264709	NM_175629.2	59	cCg/cg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	104	669	7	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73335810	73335810	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183862178		P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	66	370	0	ENST00000377767.4:c.2485C>T	p.Arg829Cys	p.R829C	ENST00000377767	NM_014953.3	829	Cgt/Tgt																																																																															
TET1	80312	MSKCC	GRCh37	10	70446284	70446284	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	105	549	0	ENST00000373644.4:c.5230del	p.Arg1744GlufsTer18	p.R1744Efs*18	ENST00000373644	NM_030625.2	1742	Aaa/aa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438317	110438322	+	inframe_deletion	In_Frame_Del	DEL	GTTGTT	GTTGTT	-			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	35	231	0	ENST00000375856.3:c.79_84del	p.Asn27_Asn28del	p.N27_N28del	ENST00000375856	NM_003749.2	27	AACAAC/-																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	132	819	2	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	168	893	4	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144049	11144051	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	130	828	1	ENST00000344626.4:c.3634_3636del	p.Glu1212del	p.E1212del	ENST00000344626	NM_003072.3	1210	gtGGAg/gtg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726490	46726490	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149246216		P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	90	546	1	ENST00000371975.4:c.569C>T	p.Thr190Met	p.T190M	ENST00000371975	NM_003579.3	190	aCg/aTg																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	84	505	6	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
ATR	545	MSKCC	GRCh37	3	142217557	142217557	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	49	413	0	ENST00000350721.4:c.5440delA	p.Arg1814GlufsTer10	p.R1814Efs*10	ENST00000350721	NM_001184.3	1814	Aga/ga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627418	37627418	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	40	588	0	ENST00000447079.4:c.1337del	p.Lys446SerfsTer6	p.K446Sfs*6	ENST00000447079	NM_015083.1	445	Aaa/aa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98238356	98238356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	111	628	1	ENST00000331920.6:c.1688C>T	p.Ala563Val	p.A563V	ENST00000331920	NM_000264.3	563	gCg/gTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	117	881	4	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945961	17945961	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	137	1049	0	ENST00000458235.1:c.1978del	p.Ala660LeufsTer10	p.A660Lfs*10	ENST00000458235	NM_000215.3	660	Gct/ct																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981721	101981721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	64	353	0	ENST00000282441.5:c.147del	p.Ala50ProfsTer24	p.A50Pfs*24	ENST00000282441	NM_001130145.2	48	Ccc/cc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106042	8106042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	75	552	0	ENST00000346208.3:c.862G>A	p.Gly288Arg	p.G288R	ENST00000346208		288	Ggg/Agg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827892	40827892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	81	524	1	ENST00000373198.4:c.2536G>A	p.Val846Ile	p.V846I	ENST00000373198	NM_133170.3	846	Gtc/Atc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	196	530	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100283	8100283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	70	785	0	ENST00000346208.3:c.257G>A	p.Arg86His	p.R86H	ENST00000346208		86	cGc/cAc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426820	121426820	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	111	630	0	ENST00000257555.6:c.511C>T	p.Arg171Ter	p.R171*	ENST00000257555		171	Cga/Tga																																																																															
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	34	525	0	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682249	37682249	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	101	676	0	ENST00000447079.4:c.3440A>T	p.Gln1147Leu	p.Q1147L	ENST00000447079	NM_015083.1	1147	cAg/cTg																																																																															
ABL1	25	MSKCC	GRCh37	9	133738365	133738365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	31	652	0	ENST00000318560.5:c.765G>T	p.Glu255Asp	p.E255D	ENST00000318560	NM_005157.4	255	gaG/gaT																																																																															
BRAF	673	MSKCC	GRCh37	7	140534444	140534444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	101	481	0	ENST00000288602.6:c.469G>A	p.Val157Ile	p.V157I	ENST00000288602	NM_004333.4	157	Gtt/Att																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799979	72799979	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	56	306	0	ENST00000325599.8:c.1190del	p.Lys397SerfsTer9	p.K397Sfs*9	ENST00000325599	NM_018130.2	397	aAg/ag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390697	139390697	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	125	959	3	ENST00000277541.6:c.7494del	p.Ser2499AlafsTer90	p.S2499Afs*90	ENST00000277541	NM_017617.3	2498	ccC/cc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626661	12626661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	82	471	0	ENST00000251849.4:c.1628C>T	p.Thr543Met	p.T543M	ENST00000251849	NM_002880.3	543	aCg/aTg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430206	181430208	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	51	413	2	ENST00000325404.1:c.67_69del	p.Gly23del	p.G23del	ENST00000325404	NM_003106.3	20	GGC/-																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205092	38205092	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	57	556	1	ENST00000317025.8:c.598del	p.Ser200AlafsTer20	p.S200Afs*20	ENST00000317025	NM_023034.1	200	Agc/gc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097740	8097740	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	154	719	0	ENST00000346208.3:c.122A>G	p.Tyr41Cys	p.Y41C	ENST00000346208		41	tAc/tGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152055745	152055745	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	120	431	0	ENST00000262189.6:c.177del	p.Thr61LeufsTer44	p.T61Lfs*44	ENST00000262189	NM_170606.2	59	ggG/gg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248736	212248737	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	52	339	0	ENST00000342788.4:c.3530dup	p.Asn1177LysfsTer9	p.N1177Kfs*9	ENST00000342788	NM_005235.2	1177	aat/aaAt																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40369257	40369257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	118	596	0	ENST00000293328.3:c.1301C>T	p.Ser434Leu	p.S434L	ENST00000293328	NM_012448.3	434	tCg/tTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15378245	15378245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	51	431	0	ENST00000263377.2:c.541C>T	p.Arg181Cys	p.R181C	ENST00000263377	NM_058243.2	181	Cgt/Tgt																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46583373	46583373	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs181240421		P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	117	631	0	ENST00000263734.3:c.301G>A	p.Val101Met	p.V101M	ENST00000263734	NM_001430.4	101	Gtg/Atg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123191783	123191783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	66	439	1	ENST00000218089.9:c.1372G>A	p.Ala458Thr	p.A458T	ENST00000218089	NM_001042749.1	458	Gcc/Acc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262670	16262670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	75	448	2	ENST00000375759.3:c.9935G>A	p.Arg3312His	p.R3312H	ENST00000375759	NM_015001.2	3312	cGc/cAc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166203	118166203	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	48	409	0	ENST00000369448.3:c.715del	p.Ile239SerfsTer28	p.I239Sfs*28	ENST00000369448	NM_017709.3	238	gAa/ga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120509104	120509104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	71	335	0	ENST00000256646.2:c.1462G>T	p.Gly488Cys	p.G488C	ENST00000256646	NM_024408.3	488	Ggt/Tgt																																																																															
RET	5979	MSKCC	GRCh37	10	43615117	43615117	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs55947360		P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	47	1038	0	ENST00000355710.3:c.2531G>T	p.Arg844Leu	p.R844L	ENST00000355710	NM_020975.4	844	cGg/cTg																																																																															
SDHD	6392	MSKCC	GRCh37	11	111958640	111958640	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	71	449	1	ENST00000375549.3:c.112C>T	p.Arg38Ter	p.R38*	ENST00000375549	NM_003002.3	38	Cga/Tga																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793457	18793458	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	52	423	2	ENST00000266497.5:c.4158dup	p.Cys1387MetfsTer8	p.C1387Mfs*8	ENST00000266497		1385	cca/ccAa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56486592	56486592	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139868331		P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	97	628	0	ENST00000267101.3:c.1171C>T	p.Arg391Trp	p.R391W	ENST00000267101	NM_001982.3	391	Cgg/Tgg																																																																															
MGA	23269	MSKCC	GRCh37	15	42034971	42034971	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	122	643	0	ENST00000219905.7:c.4817del	p.Leu1606Ter	p.L1606*	ENST00000219905	NM_001164273.1	1605	Ttt/tt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134260	2134260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	133	924	1	ENST00000219476.3:c.4037C>T	p.Ser1346Leu	p.S1346L	ENST00000219476	NM_000548.3	1346	tCg/tTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16055280	16055290	+	frameshift_variant	Frame_Shift_Del	DEL	CACCTTGGTAT	CACCTTGGTAT	-			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	41	385	0	ENST00000268712.3:c.812_822del	p.Asp271ValfsTer3	p.D271Vfs*3	ENST00000268712	NM_006311.3	271	gATACCAAGGTG/g																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16097805	16097805	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	109	601	0	ENST00000268712.3:c.79T>C	p.Tyr27His	p.Y27H	ENST00000268712	NM_006311.3	27	Tat/Cat																																																																															
CD79B	974	MSKCC	GRCh37	17	62007694	62007694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	88	543	0	ENST00000392795.3:c.173G>A	p.Arg58Gln	p.R58Q	ENST00000392795	NM_001039933.1	58	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210916	36210916	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	149	1112	0	ENST00000222270.7:c.671del	p.Pro224GlnfsTer15	p.P224Qfs*15	ENST00000222270	NM_014727.1	223	Ccc/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213498	36213498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	90	1100	2	ENST00000222270.7:c.2600G>A	p.Arg867His	p.R867H	ENST00000222270	NM_014727.1	867	cGc/cAc																																																																															
ALK	238	MSKCC	GRCh37	2	29416790	29416790	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	39	320	0	ENST00000389048.3:c.4165-2A>C		p.X1389_splice	ENST00000389048	NM_004304.4	1389																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31023405	31023405	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	84	486	0	ENST00000375687.4:c.2890T>C	p.Ser964Pro	p.S964P	ENST00000375687	NM_015338.5	964	Tct/Cct																																																																															
SRC	6714	MSKCC	GRCh37	20	36026107	36026107	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34881773		P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	133	950	0	ENST00000358208.4:c.709G>A	p.Ala237Thr	p.A237T	ENST00000358208		237	Gcc/Acc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620666	52620666	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	85	382	1	ENST00000394830.3:c.3087G>T	p.Glu1029Asp	p.E1029D	ENST00000394830	NM_018313.4	1029	gaG/gaT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187519133	187519133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	86	429	0	ENST00000441802.2:c.12250G>T	p.Gly4084Cys	p.G4084C	ENST00000441802	NM_005245.3	4084	Ggt/Tgt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845240	151845240	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	136	605	0	ENST00000262189.6:c.13772A>G	p.Tyr4591Cys	p.Y4591C	ENST00000262189	NM_170606.2	4591	tAt/tGt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129326	64129326	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	116	884	0	ENST00000334205.4:c.758G>A	p.Arg253Gln	p.R253Q	ENST00000334205	NM_003942.2	253	cGg/cAg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138774	64138774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	155	826	0	ENST00000334205.4:c.2141G>A	p.Arg714Gln	p.R714Q	ENST00000334205	NM_003942.2	714	cGg/cAg																																																																															
POLE	5426	MSKCC	GRCh37	12	133253977	133253977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	102	586	0	ENST00000320574.5:c.773C>T	p.Thr258Ile	p.T258I	ENST00000320574	NM_006231.2	258	aCc/aTc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612353	1612353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	168	1044	4	ENST00000344749.5:c.1666C>T	p.Arg556Trp	p.R556W	ENST00000344749	NM_001136139.2	556	Cgg/Tgg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128047266	128047266	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	62	399	0	ENST00000285398.2:c.656C>A	p.Ala219Asp	p.A219D	ENST00000285398	NM_000122.1	219	gCc/gAc																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84388671	84388673	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	60	386	0	ENST00000321945.7:c.615_617del	p.Glu205del	p.E205del	ENST00000321945	NM_139076.2	205	gaAGAt/gat																																																																															
MSH3	4437	MSKCC	GRCh37	5	80021356	80021357	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	89	532	0	ENST00000265081.6:c.1425_1426insA	p.Tyr476IlefsTer7	p.Y476Ifs*7	ENST00000265081	NM_002439.4	475	-/A																																																																															
RASA1	5921	MSKCC	GRCh37	5	86633857	86633857	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	21	335	0	ENST00000274376.6:c.966T>G	p.Asn322Lys	p.N322K	ENST00000274376	NM_002890.2	322	aaT/aaG																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670340	30670340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	94	481	0	ENST00000376406.3:c.6092G>T	p.Arg2031Leu	p.R2031L	ENST00000376406	NM_014641.2	2031	cGg/cTg																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43739024	43739024	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	84	482	0	ENST00000523873.1:c.41T>C	p.Leu14Ser	p.L14S	ENST00000523873		14	tTg/tCg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68989700	68989700	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	92	535	1	ENST00000288368.4:c.1638C>A	p.His546Gln	p.H546Q	ENST00000288368	NM_024870.2	546	caC/caA																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128305418	128305418	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	93	545	0	ENST00000265960.3:c.878A>G	p.Gln293Arg	p.Q293R	ENST00000265960	NM_001006617.1	293	cAg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0051003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	110	615	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
KIT	3815	MSKCC	GRCh37	4	55564527	55564527	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	55	466	0	ENST00000288135.5:c.415A>G	p.Thr139Ala	p.T139A	ENST00000288135	NM_000222.2	139	Aca/Gca																																																																															
NF1	4763	MSKCC	GRCh37	17	29652959	29652959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	41	427	0	ENST00000358273.4:c.4957C>T	p.Arg1653Cys	p.R1653C	ENST00000358273	NM_001042492.2	1653	Cgc/Tgc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602326	10602326	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	140	771	0	ENST00000171111.5:c.1252del	p.Val418TrpfsTer40	p.V418Wfs*40	ENST00000171111	NM_203500.1	418	Gtg/tg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138407738	138407738	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	33	397	0	ENST00000289153.2:c.2115C>A	p.His705Gln	p.H705Q	ENST00000289153	NM_006219.2	705	caC/caA																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149511625	149511625	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0051003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	85	546	0	ENST00000261799.4:c.1160A>C	p.Lys387Thr	p.K387T	ENST00000261799	NM_002609.3	387	aAg/aCg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509033	106509033	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	57	496	0	ENST00000359195.3:c.1027G>C	p.Gly343Arg	p.G343R	ENST00000359195	NM_002649.2	343	Ggc/Cgc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100725	8100726	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0051039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	202	481	0	ENST00000346208.3:c.701dup	p.Ser237GlnfsTer66	p.S237Qfs*66	ENST00000346208		233	-/T																																																																															
TP53	7157	MSKCC	GRCh37	17	7578260	7578266	+	frameshift_variant	Frame_Shift_Del	DEL	CTCGGAT	CTCGGAT	-			P-0051039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	209	467	0	ENST00000269305.4:c.583_589del	p.Ile195TrpfsTer50	p.I195Wfs*50	ENST00000269305	NM_001126112.2	195	ATCCGAGtg/tg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138452214	138452214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	174	314	0	ENST00000289153.2:c.1039G>A	p.Glu347Lys	p.E347K	ENST00000289153	NM_006219.2	347	Gaa/Aaa																																																																															
TERT	7015	MSKCC	GRCh37	5	1294082	1294082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	184	703	0	ENST00000310581.5:c.919C>T	p.Pro307Ser	p.P307S	ENST00000310581	NM_198253.2	307	Ccc/Tcc																																																																															
MPL	4352	MSKCC	GRCh37	1	43806175	43806175	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	193	217	0	ENST00000372470.3:c.971C>A	p.Pro324His	p.P324H	ENST00000372470	NM_005373.2	324	cCc/cAc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166386	118166387	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0051043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	90	237	0	ENST00000369448.3:c.902_903dup	p.Ser302GlufsTer8	p.S302Efs*8	ENST00000369448	NM_017709.3	299	gaa/gaAGa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435588	18435588	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	29	148	0	ENST00000266497.5:c.573G>T	p.Glu191Asp	p.E191D	ENST00000266497		191	gaG/gaT																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926888	112926888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	89	265	0	ENST00000351677.2:c.1508G>T	p.Gly503Val	p.G503V	ENST00000351677	NM_002834.3	503	gGg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781823	3781823	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	164	322	0	ENST00000262367.5:c.4844A>G	p.Asn1615Ser	p.N1615S	ENST00000262367	NM_004380.2	1615	aAt/aGt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862866	9862866	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	191	392	0	ENST00000330684.3:c.2437G>T	p.Asp813Tyr	p.D813Y	ENST00000330684	NM_001134407.1	813	Gac/Tac																																																																															
PALB2	79728	MSKCC	GRCh37	16	23614926	23614926	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	133	226	0	ENST00000261584.4:c.3415A>T	p.Ile1139Phe	p.I1139F	ENST00000261584	NM_024675.3	1139	Att/Ttt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348652	89348652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	39	295	1	ENST00000301030.4:c.4298C>T	p.Ser1433Phe	p.S1433F	ENST00000301030	NM_001256183.1	1433	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	235	319	0	ENST00000269305.4:c.734del	p.Gly245AlafsTer2	p.G245Afs*2	ENST00000269305	NM_001126112.2	245	gGc/gc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39690038	39690038	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0051043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	71	98	0	ENST00000361337.2:c.63del	p.His22IlefsTer81	p.H22Ifs*81	ENST00000361337	NM_003286.2	21	tcT/tc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967173	134967173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	78	249	0	ENST00000398015.3:c.2512G>A	p.Glu838Lys	p.E838K	ENST00000398015	NM_004441.4	838	Gag/Aag																																																																															
KIT	3815	MSKCC	GRCh37	4	55599258	55599258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	34	210	0	ENST00000288135.5:c.2384C>T	p.Ala795Val	p.A795V	ENST00000288135	NM_000222.2	795	gCc/gTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1293797	1293797	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	438	519	0	ENST00000310581.5:c.1204C>A	p.Gln402Lys	p.Q402K	ENST00000310581	NM_198253.2	402	Cag/Aag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486247	8486247	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	37	233	0	ENST00000356435.5:c.2570G>C	p.Arg857Pro	p.R857P	ENST00000356435		857	cGt/cCt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974721	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	58	233	0	ENST00000304494.5:c.106del	p.Ala36ArgfsTer17	p.A36Rfs*17	ENST00000304494	NM_000077.4	36	Gcg/cg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123276908	123276908	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	84	371	0	ENST00000358487.5:c.1009G>C	p.Ala337Pro	p.A337P	ENST00000358487	NM_000141.4	337	Gct/Cct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0051007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	187	364	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562739	21562739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	163	471	1	ENST00000382592.4:c.1180G>A	p.Val394Met	p.V394M	ENST00000382592	NM_014572.2	394	Gtg/Atg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221275	1221275	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0051007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	154	647	1	ENST00000326873.7:c.798del	p.Asn266LysfsTer21	p.N266Kfs*21	ENST00000326873	NM_000455.4	266	aaC/aa																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626772	14626772	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	148	391	0	ENST00000254322.2:c.1003G>C	p.Glu335Gln	p.E335Q	ENST00000254322	NM_006145.1	335	Gag/Cag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505471	25505471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	148	612	0	ENST00000264709.3:c.287G>T	p.Arg96Leu	p.R96L	ENST00000264709	NM_175629.2	96	cGg/cTg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31390189	31390189	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0051007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	123	362	1	ENST00000328111.2:c.2146-2A>T		p.X716_splice	ENST00000328111	NM_006892.3	716																																																																																
RAC2	5880	MSKCC	GRCh37	22	37628954	37628954	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	185	588	0	ENST00000249071.6:c.112G>C	p.Asp38His	p.D38H	ENST00000249071	NM_002872.4	38	Gac/Cac																																																																															
TET2	54790	MSKCC	GRCh37	4	106157896	106157896	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	97	311	0	ENST00000380013.4:c.2797C>T	p.Gln933Ter	p.Q933*	ENST00000380013	NM_001127208.2	933	Cag/Tag																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969984	161969984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	159	551	0	ENST00000366898.1:c.985G>T	p.Gly329Cys	p.G329C	ENST00000366898	NM_004562.2	329	Ggc/Tgc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891209	101891209	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	75	344	0	ENST00000374994.4:c.170C>G	p.Ser57Cys	p.S57C	ENST00000374994	NM_004612.2	57	tCt/tGt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123164957	123164957	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	56	237	0	ENST00000218089.9:c.270G>T	p.Met90Ile	p.M90I	ENST00000218089	NM_001042749.1	90	atG/atT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0051011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	22	265	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0051013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	12	458	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587782082		P-0051020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	342	574	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																															
NF1	4763	MSKCC	GRCh37	17	29679334	29679346	+	frameshift_variant	Frame_Shift_Del	DEL	CCACCTATCCAAC	CCACCTATCCAAC	-			P-0051020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	244	377	0	ENST00000358273.4:c.7517_7529del	p.Ala2506ValfsTer13	p.A2506Vfs*13	ENST00000358273	NM_001042492.2	2506	gCCACCTATCCAACt/gt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0051026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	77	418	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
WT1	7490	MSKCC	GRCh37	11	32417887	32417887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	74	527	1	ENST00000332351.3:c.1165C>T	p.Arg389Cys	p.R389C	ENST00000332351	NM_024426.4	389	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786204041		P-0051026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	78	592	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349508	89349508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143417087		P-0051026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	70	649	0	ENST00000301030.4:c.3442G>A	p.Gly1148Ser	p.G1148S	ENST00000301030	NM_001256183.1	1148	Ggc/Agc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245993	46245993	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0051026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	59	300	0	ENST00000334344.6:c.4087del	p.Asp1363IlefsTer10	p.D1363Ifs*10	ENST00000334344	NM_152641.2	1363	Gat/at																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099319	4099319	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	78	722	0	ENST00000262948.5:c.799A>G	p.Ile267Val	p.I267V	ENST00000262948	NM_030662.3	267	Atc/Gtc																																																																															
TET2	54790	MSKCC	GRCh37	4	106155638	106155638	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	60	357	0	ENST00000380013.4:c.539A>C	p.Gln180Pro	p.Q180P	ENST00000380013	NM_001127208.2	180	cAg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0051028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	82	609	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0051028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	70	366	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591865	48591865	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0051028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	64	500	0	ENST00000342988.3:c.1028C>G	p.Ser343Ter	p.S343*	ENST00000342988	NM_005359.5	343	tCa/tGa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25497949	25497949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	80	630	0	ENST00000264709.3:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000264709	NM_175629.2	167	cGg/cAg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028638	12028638	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	71	399	0	ENST00000353533.5:c.841C>T	p.Arg281Ter	p.R281*	ENST00000353533	NM_003010.3	281	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495616	56495616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	42	565	0	ENST00000267101.3:c.3806G>A	p.Gly1269Glu	p.G1269E	ENST00000267101	NM_001982.3	1269	gGa/gAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177011	56177014	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0051032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	32	339	0	ENST00000399503.3:c.2286_2289delTAGA	p.Arg763CysfsTer35	p.R763Cfs*35	ENST00000399503	NM_005921.1	761	ATAGat/at																																																																															
B2M	567	MSKCC	GRCh37	15	45003747	45003747	+	start_lost	Translation_Start_Site	SNP	G	G	A	rs1057519877		P-0051033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	60	553	0	ENST00000558401.1:c.3G>A	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	atG/atA																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031885	26031885	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	78	375	0	ENST00000244661.2:c.404G>C	p.Arg135Thr	p.R135T	ENST00000244661	NM_003537.3	135	aGa/aCa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40747137	40747137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	210	436	2	ENST00000373198.4:c.2945C>T	p.Pro982Leu	p.P982L	ENST00000373198	NM_133170.3	982	cCg/cTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857275	9857275	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1426934537		P-0051033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	236	489	0	ENST00000330684.3:c.4126C>T	p.Arg1376Cys	p.R1376C	ENST00000330684	NM_001134407.1	1376	Cgc/Tgc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906964	32906964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	97	239	0	ENST00000380152.3:c.1349C>T	p.Ser450Phe	p.S450F	ENST00000380152		450	tCt/tTt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972595	32972596	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0051033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	50	304	0	ENST00000380152.3:c.9946_9947del	p.Glu3316ThrfsTer10	p.E3316Tfs*10	ENST00000380152		3315	aaAGaa/aaaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577117	7577118	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0051033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	501	547	0	ENST00000269305.4:c.820_821del	p.Val274LeufsTer31	p.V274Lfs*31	ENST00000269305	NM_001126112.2	274	GTt/t																																																																															
INSR	3643	MSKCC	GRCh37	19	7142913	7142913	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	173	706	0	ENST00000302850.5:c.2456G>C	p.Arg819Pro	p.R819P	ENST00000302850	NM_000208.2	819	cGc/cCc																																																																															
CIC	23152	MSKCC	GRCh37	19	42793537	42793537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	200	703	0	ENST00000575354.2:c.1339G>A	p.Glu447Lys	p.E447K	ENST00000575354	NM_015125.3	447	Gaa/Aaa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31019229	31019229	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	115	422	0	ENST00000375687.4:c.824C>A	p.Ala275Asp	p.A275D	ENST00000375687	NM_015338.5	275	gCc/gAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0051054-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			607	208	401	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0051054-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			581	236	404	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039368	47039369	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0051054-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			258	137	267	0	ENST00000329236.7:c.761dup	p.Arg255AlafsTer48	p.R255Afs*48	ENST00000329236	NM_001204466.1	254	gtg/gTtg																																																																															
BRAF	673	MSKCC	GRCh37	7	140494163	140494163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051054-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			823	103	428	0	ENST00000288602.6:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000288602	NM_004333.4	362	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051054-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			834	98	505	0	ENST00000269305.4:c.532C>A	p.His178Asn	p.H178N	ENST00000269305	NM_001126112.2	178	Cac/Aac																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655200	45655200	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051054-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			697	79	391	0	ENST00000407780.3:c.652G>C	p.Glu218Gln	p.E218Q	ENST00000407780	NM_001283052.1	218	Gag/Cag																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575366	64575366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051054-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			881	94	398	0	ENST00000337652.1:c.666G>T	p.Glu222Asp	p.E222D	ENST00000337652	NM_130803.2	222	gaG/gaT																																																																															
RB1	5925	MSKCC	GRCh37	13	48923112	48923112	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051054-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	53	214	0	ENST00000267163.4:c.560C>G	p.Ser187Cys	p.S187C	ENST00000267163	NM_000321.2	187	tCt/tGt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89831455	89831455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051054-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			822	77	358	0	ENST00000389301.3:c.2621G>C	p.Arg874Thr	p.R874T	ENST00000389301	NM_000135.2	874	aGa/aCa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265109	46265109	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051054-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			650	63	280	0	ENST00000371998.3:c.1979C>G	p.Ser660Cys	p.S660C	ENST00000371998		660	tCc/tGc																																																																															
XIAP	331	MSKCC	GRCh37	X	123034435	123034435	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051054-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			202	59	132	0	ENST00000355640.3:c.1192C>G	p.Gln398Glu	p.Q398E	ENST00000355640		398	Cag/Gag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295377	1295377	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0051054-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	56	155	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0050949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	868	946	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602314	10602314	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	433	997	1	ENST00000171111.5:c.1264G>C	p.Asp422His	p.D422H	ENST00000171111	NM_203500.1	422	Gat/Cat																																																																															
FH	2271	MSKCC	GRCh37	1	241667466	241667466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	93	314	0	ENST00000366560.3:c.984G>A	p.Met328Ile	p.M328I	ENST00000366560	NM_000143.3	328	atG/atA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624258	89624258	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	86	243	0	ENST00000371953.3:c.32G>C	p.Arg11Thr	p.R11T	ENST00000371953	NM_000314.4	11	aGa/aCa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64128616	64128616	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	106	647	0	ENST00000334205.4:c.473T>C	p.Ile158Thr	p.I158T	ENST00000334205	NM_003942.2	158	aTt/aCt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18716374	18716374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	178	394	0	ENST00000266497.5:c.3721C>A	p.Gln1241Lys	p.Q1241K	ENST00000266497		1241	Cag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68842598	68842598	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0050949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	128	517	0	ENST00000261769.5:c.534C>G	p.Ile178Met	p.I178M	ENST00000261769	NM_004360.3	178	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7579353	7579353	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	696	818	0	ENST00000269305.4:c.334G>C	p.Gly112Arg	p.G112R	ENST00000269305	NM_001126112.2	112	Ggc/Cgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288428	15288428	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	146	570	0	ENST00000263388.2:c.4311C>G	p.Phe1437Leu	p.F1437L	ENST00000263388	NM_000435.2	1437	ttC/ttG																																																																															
PMS1	5378	MSKCC	GRCh37	2	190660606	190660606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	73	346	0	ENST00000441310.2:c.244G>A	p.Glu82Lys	p.E82K	ENST00000441310	NM_000534.4	82	Gaa/Aaa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662309	227662310	+	missense_variant	Missense_Mutation	DNP	GC	GC	CA			P-0050949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	320	803	2	ENST00000305123.5:c.1145_1146delinsTG	p.Cys382Leu	p.C382L	ENST00000305123	NM_005544.2	382	tGC/tTG																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033204	69033205	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0050949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	101	541	1	ENST00000288368.4:c.3644_3645delinsTT	p.Arg1215Leu	p.R1215L	ENST00000288368	NM_024870.2	1215	cGG/cTT																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98224234	98224234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	85	412	0	ENST00000331920.6:c.2607G>A	p.Met869Ile	p.M869I	ENST00000331920	NM_000264.3	869	atG/atA																																																																															
CARD11	84433	MSKCC	GRCh37	7	2985468	2985468	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	30	510	0	ENST00000396946.4:c.343T>A	p.Phe115Ile	p.F115I	ENST00000396946	NM_032415.4	115	Ttc/Atc																																																																															
NF1	4763	MSKCC	GRCh37	17	29490393	29490393	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0050945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	28	454	0	ENST00000358273.4:c.478A>T	p.Arg160Trp	p.R160W	ENST00000358273	NM_001042492.2	160	Agg/Tgg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56152476	56152476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	20	283	0	ENST00000399503.3:c.532G>A	p.Asp178Asn	p.D178N	ENST00000399503	NM_005921.1	178	Gat/Aat																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715979	52715979	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786205227		P-0050942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	43	753	0	ENST00000322088.6:c.544C>T	p.Arg182Trp	p.R182W	ENST00000322088	NM_014225.5	182	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578509	7578509	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	110	936	0	ENST00000269305.4:c.421T>C	p.Cys141Arg	p.C141R	ENST00000269305	NM_001126112.2	141	Tgc/Cgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202773	16202773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140309172		P-0050942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	31	450	2	ENST00000375759.3:c.481C>T	p.Arg161Trp	p.R161W	ENST00000375759	NM_015001.2	161	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112162945	112162945	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs1114167599		P-0050942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	37	295	0	ENST00000257430.4:c.1548+1G>T		p.X516_splice	ENST00000257430	NM_000038.5	516																																																																																
IRS1	3667	MSKCC	GRCh37	2	227661717	227661717	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144912682		P-0050942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	59	694	0	ENST00000305123.5:c.1738C>T	p.Arg580Cys	p.R580C	ENST00000305123	NM_005544.2	580	Cgc/Tgc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074181	8074182	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0050950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	94	465	0	ENST00000377482.5:c.477_478del	p.Glu160SerfsTer6	p.E160Sfs*6	ENST00000377482	NM_018948.3	159	tcTGaa/tcaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0050950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	109	808	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0050950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	92	559	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0050951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	25	227	1				ENST00000310581	NM_198253.2																																																																																	
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0050951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	135	406	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431873	49431874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0050951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	54	815	0	ENST00000301067.7:c.9265dupG	p.Val3089GlyfsTer9	p.V3089Gfs*9	ENST00000301067	NM_003482.3	3089	gtg/gGtg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041046	47041046	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0050951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	64	787	0	ENST00000329236.7:c.1341+1G>T		p.X447_splice	ENST00000329236	NM_001204466.1	447																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398211	25398211	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	41	352	0	ENST00000256078.4:c.108A>G	p.Ile36Met	p.I36M	ENST00000256078	NM_033360.2	36	atA/atG																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626805	14626805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	49	627	0	ENST00000254322.2:c.970G>A	p.Glu324Lys	p.E324K	ENST00000254322	NM_006145.1	324	Gaa/Aaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111514	8111514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	67	625	0	ENST00000346208.3:c.1000G>A	p.Gly334Arg	p.G334R	ENST00000346208		334	Ggg/Agg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28602343	28602343	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	62	505	1	ENST00000241453.7:c.2025del	p.Asn676ThrfsTer14	p.N676Tfs*14	ENST00000241453	NM_004119.2	675	gtG/gt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011128	12011128	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	46	368	0	ENST00000353533.5:c.535G>C	p.Glu179Gln	p.E179Q	ENST00000353533	NM_003010.3	179	Gaa/Caa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119761	70119761	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	58	627	0	ENST00000245479.2:c.763G>C	p.Glu255Gln	p.E255Q	ENST00000245479	NM_000346.3	255	Gag/Cag																																																																															
RAF1	5894	MSKCC	GRCh37	3	12650341	12650341	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	47	502	0	ENST00000251849.4:c.505G>C	p.Gly169Arg	p.G169R	ENST00000251849	NM_002880.3	169	Ggc/Cgc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222739	53222739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	84	941	1	ENST00000375401.3:c.4197G>T	p.Leu1399Phe	p.L1399F	ENST00000375401	NM_004187.3	1399	ttG/ttT																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0050954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	743	696	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7579585	7579585	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	209	587	1	ENST00000269305.4:c.102del	p.Leu35CysfsTer9	p.L35Cfs*9	ENST00000269305	NM_001126112.2	34	ccC/cc																																																																															
TET1	80312	MSKCC	GRCh37	10	70451518	70451518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	73	559	2	ENST00000373644.4:c.6358G>A	p.Val2120Met	p.V2120M	ENST00000373644	NM_030625.2	2120	Gtg/Atg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913236	32913236	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	80	472	0	ENST00000380152.3:c.4744A>G	p.Thr1582Ala	p.T1582A	ENST00000380152		1582	Acc/Gcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	21	555	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	9	391	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	42	872	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48951053	48951053	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	15	242	0	ENST00000267163.4:c.1216-1G>T		p.X406_splice	ENST00000267163	NM_000321.2	406																																																																																
B2M	567	MSKCC	GRCh37	15	45007792	45007792	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	31	453	0	ENST00000558401.1:c.239G>A	p.Trp80Ter	p.W80*	ENST00000558401	NM_004048.2	80	tGg/tAg																																																																															
MDM2	4193	MSKCC	GRCh37	12	69230456	69230456	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	25	368	0	ENST00000462284.1:c.845A>G	p.Tyr282Cys	p.Y282C	ENST00000462284	NM_002392.5	282	tAt/tGt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508614	106508614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	30	588	1	ENST00000359195.3:c.608C>T	p.Thr203Met	p.T203M	ENST00000359195	NM_002649.2	203	aCg/aTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2974095	2974095	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	26	524	0	ENST00000396946.4:c.1510G>T	p.Gly504Cys	p.G504C	ENST00000396946	NM_032415.4	504	Ggc/Tgc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117759	115117759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	26	444	0	ENST00000257566.3:c.676G>T	p.Asp226Tyr	p.D226Y	ENST00000257566	NM_016569.3	226	Gat/Tat																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711875	89711875	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	12	401	0	ENST00000371953.3:c.493G>T	p.Gly165Ter	p.G165*	ENST00000371953	NM_000314.4	165	Gga/Tga																																																																															
FLT3	2322	MSKCC	GRCh37	13	28592727	28592727	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	31	500	0	ENST00000241453.7:c.2419-1G>T		p.X807_splice	ENST00000241453	NM_004119.2	807																																																																																
PAX5	5079	MSKCC	GRCh37	9	36846912	36846912	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	26	622	0	ENST00000358127.4:c.1027G>T	p.Gly343Trp	p.G343W	ENST00000358127	NM_001280556.1	343	Ggg/Tgg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720650	89720650	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	22	418	0	ENST00000371953.3:c.802-1G>T		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134851762	134851762	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	22	792	0	ENST00000398015.3:c.1168C>A	p.Arg390Ser	p.R390S	ENST00000398015	NM_004441.4	390	Cgc/Agc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11297985	11297985	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	63	788	0	ENST00000361445.4:c.2123G>T	p.Arg708Leu	p.R708L	ENST00000361445	NM_004958.3	708	cGg/cTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11307877	11307877	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	44	612	0	ENST00000361445.4:c.1115A>T	p.Gln372Leu	p.Q372L	ENST00000361445	NM_004958.3	372	cAg/cTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202969	16202969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	33	608	0	ENST00000375759.3:c.677G>T	p.Arg226Leu	p.R226L	ENST00000375759	NM_015001.2	226	cGg/cTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106594	27106594	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	46	781	2	ENST00000324856.7:c.6205G>T	p.Gly2069Trp	p.G2069W	ENST00000324856	NM_006015.4	2069	Ggg/Tgg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932422	36932422	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	48	831	0	ENST00000361632.4:c.2047T>G	p.Phe683Val	p.F683V	ENST00000361632		683	Ttc/Gtc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845411	156845411	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	45	1107	1	ENST00000524377.1:c.1454G>T	p.Gly485Val	p.G485V	ENST00000524377	NM_002529.3	485	gGg/gTg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156848963	156848963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	31	886	0	ENST00000524377.1:c.1855C>A	p.Pro619Thr	p.P619T	ENST00000524377	NM_002529.3	619	Cca/Aca																																																																															
AKT3	10000	MSKCC	GRCh37	1	243668570	243668570	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	40	434	0	ENST00000263826.5:c.1421C>A	p.Ser474Tyr	p.S474Y	ENST00000263826	NM_005465.4	474	tCt/tAt																																																																															
TET1	80312	MSKCC	GRCh37	10	70332820	70332820	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	44	673	0	ENST00000373644.4:c.725T>G	p.Met242Arg	p.M242R	ENST00000373644	NM_030625.2	242	aTg/aGg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88679198	88679198	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	14	257	0	ENST00000372037.3:c.1138G>C	p.Asp380His	p.D380H	ENST00000372037	NM_004329.2	380	Gac/Cac																																																																															
MEN1	4221	MSKCC	GRCh37	11	64574655	64574655	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	26	954	0	ENST00000337652.1:c.835G>T	p.Glu279Ter	p.E279*	ENST00000337652	NM_130803.2	279	Gaa/Taa																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200272	67200272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	33	841	1	ENST00000312629.5:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000312629	NM_003952.2	194	Gac/Tac																																																																															
ATM	472	MSKCC	GRCh37	11	108159774	108159774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	16	370	0	ENST00000278616.4:c.4180A>G	p.Ser1394Gly	p.S1394G	ENST00000278616	NM_000051.3	1394	Agc/Ggc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	493231	493231	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	33	477	0	ENST00000399788.2:c.332A>T	p.Glu111Val	p.E111V	ENST00000399788	NM_001042603.1	111	gAg/gTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18443925	18443925	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	11	355	0	ENST00000266497.5:c.898C>A	p.Pro300Thr	p.P300T	ENST00000266497		300	Cct/Act																																																																															
RECQL	5965	MSKCC	GRCh37	12	21627858	21627858	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	34	651	0	ENST00000421138.2:c.1272C>A	p.Phe424Leu	p.F424L	ENST00000421138		424	ttC/ttA																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906774	32906774	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	25	677	1	ENST00000380152.3:c.1159G>T	p.Val387Phe	p.V387F	ENST00000380152		387	Gtt/Ttt																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38614611	38614611	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	14	379	0	ENST00000299084.4:c.376+1G>T		p.X126_splice	ENST00000299084	NM_152594.2	126																																																																																
MGA	23269	MSKCC	GRCh37	15	41991358	41991358	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	18	464	0	ENST00000219905.7:c.2188+1G>A		p.X730_splice	ENST00000219905	NM_001164273.1	730																																																																																
CD276	80381	MSKCC	GRCh37	15	73996212	73996212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	15	595	0	ENST00000318443.5:c.946G>T	p.Asp316Tyr	p.D316Y	ENST00000318443	NM_001024736.1	316	Gac/Tac																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680776	88680776	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	40	707	0	ENST00000360948.2:c.481T>A	p.Phe161Ile	p.F161I	ENST00000360948	NM_001012338.2	161	Ttt/Att																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222563	2222563	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	30	942	0	ENST00000326181.6:c.757G>T	p.Glu253Ter	p.E253*	ENST00000326181	NM_032271.2	253	Gag/Tag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3842062	3842062	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	16	460	0	ENST00000262367.5:c.1250C>G	p.Ser417Cys	p.S417C	ENST00000262367	NM_004380.2	417	tCt/tGt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862869	9862869	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	33	680	0	ENST00000330684.3:c.2434C>A	p.Leu812Met	p.L812M	ENST00000330684	NM_001134407.1	812	Ctg/Atg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041484	14041484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	26	395	0	ENST00000311895.7:c.2031G>C	p.Gln677His	p.Q677H	ENST00000311895	NM_005236.2	677	caG/caC																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992547	72992547	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	31	826	0	ENST00000268489.5:c.1498G>C	p.Asp500His	p.D500H	ENST00000268489	NM_006885.3	500	Gat/Cat																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969954	81969954	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	29	500	0	ENST00000359376.3:c.3023A>C	p.Gln1008Pro	p.Q1008P	ENST00000359376	NM_002661.3	1008	cAg/cCg																																																																															
NF1	4763	MSKCC	GRCh37	17	29550460	29550460	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	13	232	0	ENST00000358273.4:c.1722-2A>T		p.X574_splice	ENST00000358273	NM_001042492.2	574																																																																																
NF1	4763	MSKCC	GRCh37	17	29553513	29553513	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	25	615	0	ENST00000358273.4:c.2062G>C	p.Glu688Gln	p.E688Q	ENST00000358273	NM_001042492.2	688	Gaa/Caa																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30322660	30322660	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	36	594	0	ENST00000322652.5:c.1673G>C	p.Ser558Thr	p.S558T	ENST00000322652	NM_015355.2	558	aGt/aCt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533676	63533677	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	34	785	0	ENST00000307078.5:c.1477dup	p.Ser493PhefsTer135	p.S493Ffs*135	ENST00000307078	NM_004655.3	493	tcg/tTcg																																																																															
YES1	7525	MSKCC	GRCh37	18	739791	739791	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	42	486	1	ENST00000314574.4:c.1081A>T	p.Lys361Ter	p.K361*	ENST00000314574	NM_005433.3	361	Aag/Tag																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622393	1622393	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	27	849	0	ENST00000344749.5:c.571G>T	p.Glu191Ter	p.E191*	ENST00000344749	NM_001136139.2	191	Gag/Tag																																																																															
GNA11	2767	MSKCC	GRCh37	19	3113366	3113366	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	39	805	0	ENST00000078429.4:c.360G>T	p.Lys120Asn	p.K120N	ENST00000078429	NM_002067.2	120	aaG/aaT																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272239	15272239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	52	744	0	ENST00000263388.2:c.6200C>T	p.Pro2067Leu	p.P2067L	ENST00000263388	NM_000435.2	2067	cCc/cTc																																																																															
CD79A	973	MSKCC	GRCh37	19	42385042	42385042	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	37	824	0	ENST00000221972.3:c.676C>A	p.Pro226Thr	p.P226T	ENST00000221972	NM_021601.3	226	Ccg/Acg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61717885	61717886	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	35	504	0	ENST00000401558.2:c.1913_1914del	p.Gly638ValfsTer24	p.G638Vfs*24	ENST00000401558	NM_003400.3	638	gGG/g																																																																															
CASP8	841	MSKCC	GRCh37	2	202149709	202149709	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	34	670	0	ENST00000358485.4:c.1150G>C	p.Gly384Arg	p.G384R	ENST00000358485	NM_001080125.1	384	Ggc/Cgc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661250	227661250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	42	865	0	ENST00000305123.5:c.2205G>T	p.Met735Ile	p.M735I	ENST00000305123	NM_005544.2	735	atG/atT																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560815	9560815	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	24	507	1	ENST00000353224.5:c.967G>T	p.Glu323Ter	p.E323*	ENST00000353224	NM_177990.2	323	Gag/Tag																																																																															
SRC	6714	MSKCC	GRCh37	20	36026248	36026248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	22	1114	0	ENST00000358208.4:c.850G>A	p.Val284Met	p.V284M	ENST00000358208		284	Gtg/Atg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739091	40739091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	20	695	0	ENST00000373198.4:c.3193C>T	p.His1065Tyr	p.H1065Y	ENST00000373198	NM_133170.3	1065	Cac/Tac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40757455	40757455	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	31	670	0	ENST00000373198.4:c.2843T>A	p.Val948Glu	p.V948E	ENST00000373198	NM_133170.3	948	gTg/gAg																																																																															
EP300	2033	MSKCC	GRCh37	22	41553172	41553172	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	26	427	0	ENST00000263253.7:c.3262-1G>C		p.X1088_splice	ENST00000263253	NM_001429.3	1088																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266888	41266888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	39	459	0	ENST00000349496.5:c.559G>T	p.Ala187Ser	p.A187S	ENST00000349496	NM_001904.3	187	Gct/Tct																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960088	134960088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	45	790	1	ENST00000398015.3:c.2445G>T	p.Trp815Cys	p.W815C	ENST00000398015	NM_004441.4	815	tgG/tgT																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430455	181430455	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	36	759	0	ENST00000325404.1:c.307A>T	p.Lys103Ter	p.K103*	ENST00000325404	NM_003106.3	103	Aag/Tag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144131	55144131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	44	572	0	ENST00000257290.5:c.1960C>A	p.His654Asn	p.H654N	ENST00000257290	NM_006206.4	654	Cat/Aat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541406	187541406	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	23	360	0	ENST00000441802.2:c.6334A>G	p.Arg2112Gly	p.R2112G	ENST00000441802	NM_005245.3	2112	Aga/Gga																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460569	149460569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	39	752	0	ENST00000286301.3:c.68T>C	p.Ile23Thr	p.I23T	ENST00000286301	NM_005211.3	23	aTa/aCa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515307	149515307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	40	740	0	ENST00000261799.4:c.175C>A	p.Pro59Thr	p.P59T	ENST00000261799	NM_002609.3	59	Ccg/Acg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680131	30680131	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	39	821	0	ENST00000376406.3:c.1588C>A	p.Pro530Thr	p.P530T	ENST00000376406	NM_014641.2	530	Ccg/Acg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190320	32190320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	23	633	1	ENST00000375023.3:c.419G>T	p.Arg140Leu	p.R140L	ENST00000375023	NM_004557.3	140	cGc/cTc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117641067	117641067	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	28	529	0	ENST00000368508.3:c.5904A>T	p.Leu1968Phe	p.L1968F	ENST00000368508	NM_002944.2	1968	ttA/ttT																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468198	50468198	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	49	844	0	ENST00000331340.3:c.1433C>G	p.Thr478Ser	p.T478S	ENST00000331340	NM_006060.4	478	aCc/aGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151917680	151917680	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	54	337	0	ENST00000262189.6:c.3640G>T	p.Val1214Leu	p.V1214L	ENST00000262189	NM_170606.2	1214	Gtg/Ttg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152007116	152007116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	32	546	0	ENST00000262189.6:c.784G>T	p.Val262Leu	p.V262L	ENST00000262189	NM_170606.2	262	Gta/Tta																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38279332	38279332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	41	877	2	ENST00000425967.3:c.1157G>T	p.Trp386Leu	p.W386L	ENST00000425967	NM_001174067.1	386	tGg/tTg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372026	55372026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	15	421	1	ENST00000297316.4:c.716C>T	p.Ala239Val	p.A239V	ENST00000297316	NM_022454.3	239	gCc/gTc																																																																															
NBN	4683	MSKCC	GRCh37	8	90982631	90982631	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	31	301	0	ENST00000265433.3:c.857A>C	p.Gln286Pro	p.Q286P	ENST00000265433	NM_002485.4	286	cAg/cCg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141549469	141549470	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	28	499	0	ENST00000220592.5:c.2118_2119delinsTT	p.Val707Leu	p.V707L	ENST00000220592	NM_012154.3	706	gtGGtg/gtTTtg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5078306	5078306	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	24	292	0	ENST00000381652.3:c.1993G>T	p.Glu665Ter	p.E665*	ENST00000381652	NM_004972.3	665	Gaa/Taa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486172	8486172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	19	469	0	ENST00000356435.5:c.2645C>A	p.Ala882Asp	p.A882D	ENST00000356435		882	gCt/gAt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123202445	123202445	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	21	255	0	ENST00000218089.9:c.2297G>C	p.Arg766Thr	p.R766T	ENST00000218089	NM_001042749.1	766	aGa/aCa																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856623	111856623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	23	180	0	ENST00000341259.2:c.674G>A	p.Arg225His	p.R225H	ENST00000341259	NM_005475.2	225	cGc/cAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68835787	68835787	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	110	493	0	ENST00000261769.5:c.378del	p.His128IlefsTer87	p.H128Ifs*87	ENST00000261769	NM_004360.3	126	ccG/cc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259331	36259331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	125	326	0	ENST00000300305.3:c.160G>A	p.Glu54Lys	p.E54K	ENST00000300305		54	Gag/Aag																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589588	67589593	+	protein_altering_variant	In_Frame_Del	DEL	GAATAT	GAATAT	AAA			P-0050968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	73	231	2	ENST00000274335.5:c.1351_1356delinsAAA	p.Glu451_Tyr452delinsLys	p.E451_Y452delinsK	ENST00000274335		451	GAATAT/AAA																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	47	765	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	186	810	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39742679	39742679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	103	476	0	ENST00000361337.2:c.1522C>T	p.Arg508Cys	p.R508C	ENST00000361337	NM_003286.2	508	Cgt/Tgt																																																																															
EZH2	2146	MSKCC	GRCh37	7	148507497	148507497	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	52	326	0	ENST00000320356.2:c.1957C>G	p.Gln653Glu	p.Q653E	ENST00000320356	NM_004456.4	653	Caa/Gaa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554512	63554512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	43	811	0	ENST00000307078.5:c.227C>T	p.Thr76Ile	p.T76I	ENST00000307078	NM_004655.3	76	aCc/aTc																																																																															
B2M	567	MSKCC	GRCh37	15	45007689	45007690	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	63	410	0	ENST00000558401.1:c.137_138del	p.Tyr46CysfsTer10	p.Y46Cfs*10	ENST00000558401	NM_004048.2	46	TAt/t																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413129	139413131	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	118	1222	0	ENST00000277541.6:c.1011_1013delTGA	p.Asp338del	p.D338del	ENST00000277541	NM_017617.3	337	gaTGAc/gac																																																																															
CDK8	1024	MSKCC	GRCh37	13	26970433	26970433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	47	173	0	ENST00000381527.3:c.802G>A	p.Glu268Lys	p.E268K	ENST00000381527	NM_001260.1	268	Gaa/Aaa																																																																															
MSH3	4437	MSKCC	GRCh37	5	80160631	80160631	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	122	492	0	ENST00000265081.6:c.3001-1G>T		p.X1001_splice	ENST00000265081	NM_002439.4	1001																																																																																
DNMT3B	1789	MSKCC	GRCh37	20	31368260	31368260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	210	996	0	ENST00000328111.2:c.131C>T	p.Pro44Leu	p.P44L	ENST00000328111	NM_006892.3	44	cCg/cTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858758	9858760	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	22	367	0	ENST00000330684.3:c.2641_2643del	p.Lys881del	p.K881del	ENST00000330684	NM_001134407.1	881	AAG/-																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665360	138665360	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	49	1155	0	ENST00000330315.3:c.205G>C	p.Glu69Gln	p.E69Q	ENST00000330315	NM_023067.3	69	Gag/Cag																																																																															
HGF	3082	MSKCC	GRCh37	7	81346570	81346570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	68	330	0	ENST00000222390.5:c.1383G>T	p.Trp461Cys	p.W461C	ENST00000222390	NM_000601.4	461	tgG/tgT																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650407	48650407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	47	565	1	ENST00000376670.3:c.377G>A	p.Gly126Glu	p.G126E	ENST00000376670	NM_002049.3	126	gGa/gAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151875028	151875028	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	180	252	0	ENST00000262189.6:c.7510C>T	p.Gln2504Ter	p.Q2504*	ENST00000262189	NM_170606.2	2504	Caa/Taa																																																																															
CDK6	1021	MSKCC	GRCh37	7	92244546	92244546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	31	474	0	ENST00000265734.4:c.889C>T	p.His297Tyr	p.H297Y	ENST00000265734	NM_001259.6	297	Cac/Tac																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665213	138665213	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	48	1057	0	ENST00000330315.3:c.352G>T	p.Glu118Ter	p.E118*	ENST00000330315	NM_023067.3	118	Gag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27102166	27102166	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	28	615	0	ENST00000324856.7:c.5092G>C	p.Asp1698His	p.D1698H	ENST00000324856	NM_006015.4	1698	Gac/Cac																																																																															
NUF2	83540	MSKCC	GRCh37	1	163298659	163298659	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	94	553	0	ENST00000271452.3:c.299G>T	p.Arg100Leu	p.R100L	ENST00000271452	NM_145697.2	100	cGg/cTg																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981778	101981778	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200985869		P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	180	878	1	ENST00000282441.5:c.199G>T	p.Ala67Ser	p.A67S	ENST00000282441	NM_001130145.2	67	Gcg/Tcg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416132	49416132	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	67	457	0	ENST00000301067.7:c.16343G>C	p.Arg5448Pro	p.R5448P	ENST00000301067	NM_003482.3	5448	cGa/cCa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421822	49421822	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	88	1198	0	ENST00000301067.7:c.14485G>T	p.Glu4829Ter	p.E4829*	ENST00000301067	NM_003482.3	4829	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445487	49445487	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	91	1080	0	ENST00000301067.7:c.1979C>G	p.Ser660Ter	p.S660*	ENST00000301067	NM_003482.3	660	tCa/tGa																																																																															
MSI1	4440	MSKCC	GRCh37	12	120783957	120783957	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	196	1221	0	ENST00000257552.2:c.1028G>T	p.Gly343Val	p.G343V	ENST00000257552	NM_002442.3	343	gGc/gTc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907404	32907404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	27	297	0	ENST00000380152.3:c.1789G>A	p.Glu597Lys	p.E597K	ENST00000380152		597	Gaa/Aaa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913044	32913044	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	37	585	0	ENST00000380152.3:c.4552G>C	p.Glu1518Gln	p.E1518Q	ENST00000380152		1518	Gaa/Caa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913099	32913099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	135	497	0	ENST00000380152.3:c.4607A>G	p.Lys1536Arg	p.K1536R	ENST00000380152		1536	aAg/aGg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134642	2134642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	133	1263	0	ENST00000219476.3:c.4419G>C	p.Lys1473Asn	p.K1473N	ENST00000219476	NM_000548.3	1473	aaG/aaC																																																																															
CTCF	10664	MSKCC	GRCh37	16	67670658	67670658	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	43	552	0	ENST00000264010.4:c.1903G>C	p.Glu635Gln	p.E635Q	ENST00000264010	NM_006565.3	635	Gag/Cag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805292	89805292	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	28	795	0	ENST00000389301.3:c.4258G>A	p.Glu1420Lys	p.E1420K	ENST00000389301	NM_000135.2	1420	Gag/Aag																																																																															
NF1	4763	MSKCC	GRCh37	17	29653166	29653166	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	58	387	0	ENST00000358273.4:c.5164del	p.Glu1722AsnfsTer12	p.E1722Nfs*12	ENST00000358273	NM_001042492.2	1722	Gaa/aa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78820288	78820288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	226	995	0	ENST00000306801.3:c.1228G>A	p.Ala410Thr	p.A410T	ENST00000306801	NM_020761.2	410	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223314	36223314	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	38	1455	0	ENST00000222270.7:c.5864C>A	p.Ser1955Ter	p.S1955*	ENST00000222270	NM_014727.1	1955	tCa/tAa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	30954216	30954216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	48	386	0	ENST00000375687.4:c.87G>A	p.Met29Ile	p.M29I	ENST00000375687	NM_015338.5	29	atG/atA																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134644676	134644676	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	28	542	0	ENST00000398015.3:c.77G>C	p.Arg26Thr	p.R26T	ENST00000398015	NM_004441.4	26	aGa/aCa																																																																															
TP63	8626	MSKCC	GRCh37	3	189584556	189584556	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	63	418	0	ENST00000264731.3:c.852G>C	p.Gln284His	p.Q284H	ENST00000264731	NM_003722.4	284	caG/caC																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749460	41749460	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	158	621	0	ENST00000226382.2:c.335A>T	p.Glu112Val	p.E112V	ENST00000226382	NM_003924.3	112	gAg/gTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184149	56184149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	15	336	0	ENST00000399503.3:c.4354G>A	p.Glu1452Lys	p.E1452K	ENST00000399503	NM_005921.1	1452	Gaa/Aaa																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64289961	64289961	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	18	291	0	ENST00000370651.3:c.405-1G>C		p.X135_splice	ENST00000370651	NM_003463.4	135																																																																																
WHSC1L1	54904	MSKCC	GRCh37	8	38184335	38184335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	26	482	0	ENST00000317025.8:c.1621G>A	p.Asp541Asn	p.D541N	ENST00000317025	NM_023034.1	541	Gac/Aac																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38196124	38196124	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	46	513	0	ENST00000317025.8:c.677G>C	p.Arg226Thr	p.R226T	ENST00000317025	NM_023034.1	226	aGa/aCa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971055	21971066	+	inframe_deletion	In_Frame_Del	DEL	CCCGGCCCGGTG	CCCGGCCCGGTG	-			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	230	480	0	ENST00000304494.5:c.292_303del	p.His98_Gly101del	p.H98_G101del	ENST00000304494	NM_000077.4	98	CACCGGGCCGGG/-																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342605	87342605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	80	532	0	ENST00000277120.3:c.890C>T	p.Ser297Leu	p.S297L	ENST00000277120		297	tCa/tTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	15	355	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	86	356	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15308383	15308383	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	51	879	4	ENST00000263388.2:c.125delC	p.Pro42LeufsTer194	p.P42Lfs*194	ENST00000263388	NM_000435.2	42	cCt/ct																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	157	616	1	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	67	328	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	213	317	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	73	1027	7	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	119	604	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	134	1011	4	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
HGF	3082	MSKCC	GRCh37	7	81358978	81358978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	148	508	0	ENST00000222390.5:c.983G>A	p.Arg328His	p.R328H	ENST00000222390	NM_000601.4	328	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	139	408	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2130244	2130244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	166	998	0	ENST00000219476.3:c.3476G>A	p.Arg1159Gln	p.R1159Q	ENST00000219476	NM_000548.3	1159	cGg/cAg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	142	903	5	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	103	777	1	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952138	178952138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	55	287	0	ENST00000263967.3:c.3193C>T	p.His1065Tyr	p.H1065Y	ENST00000263967	NM_006218.2	1065	Cat/Tat																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	95	266	0	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	100	459	8	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs786201057		P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	25	647	3	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202149799	202149799	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	117	603	0	ENST00000358485.4:c.1245delT	p.Phe415LeufsTer26	p.F415Lfs*26	ENST00000358485	NM_001080125.1	414	Ttt/tt																																																																															
POLE	5426	MSKCC	GRCh37	12	133209298	133209298	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	135	973	1	ENST00000320574.5:c.6088delG	p.Ala2030ProfsTer18	p.A2030Pfs*18	ENST00000320574	NM_006231.2	2030	Gcc/cc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043407	180043407	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	135	824	1	ENST00000261937.6:c.3179G>T	p.Arg1060Leu	p.R1060L	ENST00000261937	NM_182925.4	1060	cGg/cTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661663	227661664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761880048		P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	128	725	20	ENST00000305123.5:c.1791dup	p.His598AlafsTer13	p.H598Afs*13	ENST00000305123	NM_005544.2	597	-/G																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	115	629	2	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																															
APC	324	MSKCC	GRCh37	5	112164664	112164664	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	62	230	0	ENST00000257430.4:c.1742delA	p.Lys581ArgfsTer9	p.K581Rfs*9	ENST00000257430	NM_000038.5	580	Aaa/aa																																																																															
NF1	4763	MSKCC	GRCh37	17	29552143	29552144	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	63	267	0	ENST00000358273.4:c.1882dup	p.Tyr628LeufsTer6	p.Y628Lfs*6	ENST00000358273	NM_001042492.2	626	ctt/cTtt																																																																															
NF1	4763	MSKCC	GRCh37	17	29486050	29486050	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1438566555		P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	98	371	0	ENST00000358273.4:c.233del	p.Asn78IlefsTer7	p.N78Ifs*7	ENST00000358273	NM_001042492.2	76	gAa/ga																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861952	57861952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	108	626	2	ENST00000228682.2:c.1253G>A	p.Arg418Gln	p.R418Q	ENST00000228682	NM_005269.2	418	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420661	49420661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	38	676	0	ENST00000301067.7:c.15088C>T	p.Arg5030Cys	p.R5030C	ENST00000301067	NM_003482.3	5030	Cgt/Tgt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225368388	225368388	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	106	362	0	ENST00000264414.4:c.1358del	p.Asn453ThrfsTer2	p.N453Tfs*2	ENST00000264414	NM_003590.4	453	aAc/ac																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621972	1621972	+	splice_region_variant,intron_variant	Splice_Region	DEL	G	G	-			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	127	986	4	ENST00000344749.5:c.823-3del		p.X275_splice	ENST00000344749	NM_001136139.2	275																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3786650	3786650	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	160	601	1	ENST00000262367.5:c.4560+1G>A		p.X1520_splice	ENST00000262367	NM_004380.2	1520																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36211898	36211899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775294431		P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	120	951	4	ENST00000222270.7:c.1656dup	p.Lys553GlnfsTer46	p.K553Qfs*46	ENST00000222270	NM_014727.1	550	gac/gaCc																																																																															
NF1	4763	MSKCC	GRCh37	17	29579995	29579996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	88	359	0	ENST00000358273.4:c.4157dupA	p.Glu1387GlyfsTer8	p.E1387Gfs*8	ENST00000358273	NM_001042492.2	1384	gaa/gAaa																																																																															
ERF	2077	MSKCC	GRCh37	19	42754077	42754077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	132	607	3	ENST00000222329.4:c.275G>A	p.Arg92His	p.R92H	ENST00000222329	NM_006494.2	92	cGc/cAc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524568	103524568	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	69	232	0	ENST00000355739.4:c.2705del	p.Asn902IlefsTer4	p.N902Ifs*4	ENST00000355739	NM_000123.3	900	cAa/ca																																																																															
ESR1	2099	MSKCC	GRCh37	6	152420068	152420068	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	97	522	0	ENST00000206249.3:c.1759delG	p.Glu587ArgfsTer20	p.E587Rfs*20	ENST00000206249	NM_000125.3	585	acG/ac																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99478548	99478548	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	75	345	0	ENST00000268035.6:c.3190C>T	p.Arg1064Ter	p.R1064*	ENST00000268035	NM_000875.3	1064	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817720	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	103	398	0	ENST00000262367.5:c.3250dupA	p.Ile1084AsnfsTer3	p.I1084Nfs*3	ENST00000262367	NM_004380.2	1084	atc/aAtc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175956141	175956141	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	255	432	0	ENST00000367669.3:c.2071C>T	p.Arg691Ter	p.R691*	ENST00000367669	NM_022457.5	691	Cga/Tga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038550	47038550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	158	894	0	ENST00000329236.7:c.481G>A	p.Val161Met	p.V161M	ENST00000329236	NM_001204466.1	161	Gtg/Atg																																																																															
MGA	23269	MSKCC	GRCh37	15	41989044	41989044	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	96	506	1	ENST00000219905.7:c.1840del	p.Arg614GlufsTer7	p.R614Efs*7	ENST00000219905	NM_001164273.1	612	ggA/gg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793313	139793313	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	174	770	1	ENST00000247668.2:c.121C>A	p.Leu41Ile	p.L41I	ENST00000247668	NM_021138.3	41	Ctc/Atc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2133770	2133770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	50	900	3	ENST00000219476.3:c.3958G>A	p.Val1320Ile	p.V1320I	ENST00000219476	NM_000548.3	1320	Gtt/Att																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061649	38061649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	13	174	0	ENST00000250448.2:c.340G>A	p.Gly114Ser	p.G114S	ENST00000250448	NM_004496.3	114	Ggc/Agc																																																																															
NF2	4771	MSKCC	GRCh37	22	30069382	30069382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	160	765	2	ENST00000338641.4:c.1247C>T	p.Ala416Val	p.A416V	ENST00000338641	NM_000268.3	416	gCg/gTg																																																																															
RARA	5914	MSKCC	GRCh37	17	38511582	38511582	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	131	859	0	ENST00000254066.5:c.1080G>T	p.Lys360Asn	p.K360N	ENST00000254066	NM_000964.3	360	aaG/aaT																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937171	36937171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	138	940	1	ENST00000361632.4:c.1148C>T	p.Ala383Val	p.A383V	ENST00000361632		383	gCc/gTc																																																																															
PARP1	142	MSKCC	GRCh37	1	226549728	226549728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	211	433	1	ENST00000366794.5:c.2905G>A	p.Val969Ile	p.V969I	ENST00000366794	NM_001618.3	969	Gtt/Att																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138914	64138914	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	61	620	0	ENST00000334205.4:c.2281G>C	p.Ala761Pro	p.A761P	ENST00000334205	NM_003942.2	761	Gcc/Ccc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115428	115115428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	39	576	0	ENST00000257566.3:c.898G>A	p.Ala300Thr	p.A300T	ENST00000257566	NM_016569.3	300	Gca/Aca																																																																															
FLT1	2321	MSKCC	GRCh37	13	29004270	29004270	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	83	324	0	ENST00000282397.4:c.1023G>C	p.Gln341His	p.Q341H	ENST00000282397	NM_002019.4	341	caG/caC																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527956	103527956	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	109	385	1	ENST00000355739.4:c.3268del	p.Glu1090ArgfsTer21	p.E1090Rfs*21	ENST00000355739	NM_000123.3	1088	ttG/tt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30133039	30133039	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	92	449	0	ENST00000331968.5:c.562T>C	p.Cys188Arg	p.C188R	ENST00000331968	NM_002742.2	188	Tgt/Cgt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67358608	67358608	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	124	578	0	ENST00000327367.4:c.116T>C	p.Val39Ala	p.V39A	ENST00000327367	NM_005902.3	39	gTc/gCc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30322636	30322636	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	124	544	0	ENST00000322652.5:c.1649A>G	p.Glu550Gly	p.E550G	ENST00000322652	NM_015355.2	550	gAa/gGa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299079	15299079	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	122	718	0	ENST00000263388.2:c.1459C>T	p.Arg487Ter	p.R487*	ENST00000263388	NM_000435.2	487	Cga/Tga																																																																															
UPF1	5976	MSKCC	GRCh37	19	18972886	18972886	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	151	760	1	ENST00000262803.5:c.2525T>C	p.Val842Ala	p.V842A	ENST00000262803	NM_002911.3	842	gTg/gCg																																																																															
ALK	238	MSKCC	GRCh37	2	30143324	30143324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	116	580	0	ENST00000389048.3:c.202G>A	p.Ala68Thr	p.A68T	ENST00000389048	NM_004304.4	68	Gcc/Acc																																																																															
CRKL	1399	MSKCC	GRCh37	22	21272432	21272432	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	127	887	0	ENST00000354336.3:c.213del	p.Phe71LeufsTer80	p.F71Lfs*80	ENST00000354336	NM_005207.3	70	cgT/cg																																																																															
ATR	545	MSKCC	GRCh37	3	142226927	142226927	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	124	424	0	ENST00000350721.4:c.4877A>G	p.Tyr1626Cys	p.Y1626C	ENST00000350721	NM_001184.3	1626	tAt/tGt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146501	185146501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	24	482	0	ENST00000265026.3:c.132G>T	p.Glu44Asp	p.E44D	ENST00000265026	NM_004721.4	44	gaG/gaT																																																																															
TET2	54790	MSKCC	GRCh37	4	106182986	106182986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	94	304	0	ENST00000380013.4:c.4025C>T	p.Pro1342Leu	p.P1342L	ENST00000380013	NM_001127208.2	1342	cCt/cTt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636806	176636806	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	99	426	0	ENST00000439151.2:c.1406A>G	p.Asp469Gly	p.D469G	ENST00000439151	NM_022455.4	469	gAc/gGc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637528	176637528	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	84	566	0	ENST00000439151.2:c.2128G>T	p.Asp710Tyr	p.D710Y	ENST00000439151	NM_022455.4	710	Gac/Tac																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803118	32803118	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	76	540	0	ENST00000374899.4:c.758T>C	p.Leu253Pro	p.L253P	ENST00000374899	NM_018833.2	253	cTg/cCg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805595	32805595	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	141	918	0	ENST00000374899.4:c.416G>A	p.Trp139Ter	p.W139*	ENST00000374899	NM_018833.2	139	tGg/tAg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129315	152129315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	149	723	0	ENST00000206249.3:c.268G>A	p.Gly90Ser	p.G90S	ENST00000206249	NM_000125.3	90	Ggc/Agc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026907	6026907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	62	210	1	ENST00000265849.7:c.1489G>A	p.Gly497Ser	p.G497S	ENST00000265849	NM_000535.5	497	Ggc/Agc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151851526	151851526	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	58	253	0	ENST00000262189.6:c.11965C>G	p.Gln3989Glu	p.Q3989E	ENST00000262189	NM_170606.2	3989	Cag/Gag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040612	47040612	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	58	486	0	ENST00000329236.7:c.1015-2A>G		p.X339_splice	ENST00000329236	NM_001204466.1	339																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53239907	53239907	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	146	688	0	ENST00000375401.3:c.1534del	p.Cys512AlafsTer37	p.C512Afs*37	ENST00000375401	NM_004187.3	512	Tgc/gc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0050680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			577	34	537	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0050680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			895	74	978	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	117	525	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																															
MGA	23269	MSKCC	GRCh37	15	42005400	42005400	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	139	547	1	ENST00000219905.7:c.3138del	p.Cys1047AlafsTer15	p.C1047Afs*15	ENST00000219905	NM_001164273.1	1046	Ccc/cc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0050764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	28	458	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0050764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	33	507	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0050764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	69	767	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123260429	123260429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	36	552	0	ENST00000358487.5:c.1472G>A	p.Cys491Tyr	p.C491Y	ENST00000358487	NM_000141.4	491	tGc/tAc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436792	52436803	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACCTTGAACTT	CACCTTGAACTT	-			P-0050764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	22	630	0	ENST00000460680.1:c.1975_1983+3del		p.X659_splice	ENST00000460680	NM_004656.3	659																																																																																
TP53	7157	MSKCC	GRCh37	17	7579408	7579430	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGCCAGGAGGGGGCTGGTG	CAGGGGCCAGGAGGGGGCTGGTG	-			P-0050775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	83	669	0	ENST00000269305.4:c.257_279delCACCAGCCCCCTCCTGGCCCCTG	p.Ala86ValfsTer55	p.A86Vfs*55	ENST00000269305	NM_001126112.2	86	gCACCAGCCCCCTCCTGGCCCCTG/g																																																																															
CDH1	999	MSKCC	GRCh37	16	68853298	68853299	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0050775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	79	602	0	ENST00000261769.5:c.1685_1686dup	p.Ala563GlnfsTer3	p.A563Qfs*3	ENST00000261769	NM_004360.3	561	tac/tACac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577137	7577137	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	91	610	0	ENST00000269305.4:c.801del	p.Asn268ThrfsTer77	p.N268Tfs*77	ENST00000269305	NM_001126112.2	267	cgG/cg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0050888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	325	463	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	15	193	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																															
AR	367	MSKCC	GRCh37	X	66943606	66943606	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	330	256	0	ENST00000374690.3:c.2686A>T	p.Met896Leu	p.M896L	ENST00000374690	NM_000044.3	896	Atg/Ttg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852414	63852414	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TT			P-0050888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	127	507	0	ENST00000279873.7:c.3192delinsTT	p.Gly1065TrpfsTer24	p.G1065Wfs*24	ENST00000279873	NM_032199.2	1064	ggC/ggTT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0050893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	22	428	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1218423	1218423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	29	536	1	ENST00000326873.7:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000326873	NM_000455.4	100	Caa/Taa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602698	10602698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	48	667	0	ENST00000171111.5:c.880G>T	p.Asp294Tyr	p.D294Y	ENST00000171111	NM_203500.1	294	Gac/Tac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830445	72830445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	20	323	0	ENST00000268489.5:c.6136C>T	p.Pro2046Ser	p.P2046S	ENST00000268489	NM_006885.3	2046	Ccc/Tcc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44820535	44820535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	24	400	0	ENST00000377967.4:c.232C>T	p.Arg78Cys	p.R78C	ENST00000377967	NM_021140.2	78	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0050895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	76	364	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	82	513	0	ENST00000269305.4:c.569del	p.Pro190LeufsTer57	p.P190Lfs*57	ENST00000269305	NM_001126112.2	190	cCt/ct																																																																															
TOP1	7150	MSKCC	GRCh37	20	39744059	39744059	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	25	347	0	ENST00000361337.2:c.1687G>C	p.Asp563His	p.D563H	ENST00000361337	NM_003286.2	563	Gat/Cat																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111517	8111518	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	130	575	0	ENST00000346208.3:c.1004dupA	p.Asp335GlufsTer17	p.D335Efs*17	ENST00000346208		335	gac/gAac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105672	27105673	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0050900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	169	384	0	ENST00000324856.7:c.5287dup	p.Glu1763GlyfsTer10	p.E1763Gfs*10	ENST00000324856	NM_006015.4	1761	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519997		P-0050902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	345	616	0	ENST00000269305.4:c.332T>G	p.Leu111Arg	p.L111R	ENST00000269305	NM_001126112.2	111	cTg/cGg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986546	36986546	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	94	506	0	ENST00000354822.5:c.1143C>A	p.Asn381Lys	p.N381K	ENST00000354822	NM_001079668.2	381	aaC/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0050908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	151	566	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	85	336	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0050908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	31	337	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222717	5222717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	55	498	1	ENST00000357368.4:c.3086C>T	p.Thr1029Met	p.T1029M	ENST00000357368	NM_002850.3	1029	aCg/aTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280814	41280814	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	34	322	0	ENST00000349496.5:c.2327G>A	p.Trp776Ter	p.W776*	ENST00000349496	NM_001904.3	776	tGg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112174944	112174944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	28	218	0	ENST00000257430.4:c.3653C>A	p.Thr1218Lys	p.T1218K	ENST00000257430	NM_000038.5	1218	aCg/aAg																																																																															
APC	324	MSKCC	GRCh37	5	112175230	112175230	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	23	222	0	ENST00000257430.4:c.3939del	p.Arg1314GlyfsTer7	p.R1314Gfs*7	ENST00000257430	NM_000038.5	1313	acT/ac																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38279374	38279374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	183	652	0	ENST00000425967.3:c.1115G>C	p.Cys372Ser	p.C372S	ENST00000425967	NM_001174067.1	372	tGc/tCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0050928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	207	464	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	285	706	1	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	193	546	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																															
SETD2	29072	MSKCC	GRCh37	3	47144847	47144847	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	74	505	0	ENST00000409792.3:c.4906G>T	p.Glu1636Ter	p.E1636*	ENST00000409792	NM_014159.6	1636	Gaa/Taa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045710	47045710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	230	1183	0	ENST00000329236.7:c.2357G>A	p.Arg786Gln	p.R786Q	ENST00000329236	NM_001204466.1	786	cGg/cAg																																																																															
BTK	695	MSKCC	GRCh37	X	100614287	100614287	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	131	561	0	ENST00000308731.7:c.888G>T	p.Lys296Asn	p.K296N	ENST00000308731	NM_000061.2	296	aaG/aaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0050933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	142	466	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382145	152382145	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	20	0	0	ENST00000206249.3:c.1255G>C	p.Glu419Gln	p.E419Q	ENST00000206249	NM_000125.3	419	Gag/Cag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230571	46230571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			496	30	300	0	ENST00000334344.6:c.820C>T	p.Arg274Ter	p.R274*	ENST00000334344	NM_152641.2	274	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108173645	108173645	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	18	371	0	ENST00000278616.4:c.5385G>A	p.Trp1795Ter	p.W1795*	ENST00000278616	NM_000051.3	1795	tgG/tgA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0050436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	220	608	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0050436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	265	531	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249092	55249092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	102	634	0	ENST00000275493.2:c.2390G>C	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	tGc/tCc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46583304	46583304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	57	417	1	ENST00000263734.3:c.232G>A	p.Glu78Lys	p.E78K	ENST00000263734	NM_001430.4	78	Gag/Aag																																																																															
FYN	2534	MSKCC	GRCh37	6	112015677	112015677	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	63	536	1	ENST00000368678.4:c.1165C>T	p.Arg389Ter	p.R389*	ENST00000368678		389	Cga/Tga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911951	32911951	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	63	568	0	ENST00000380152.3:c.3459G>C	p.Lys1153Asn	p.K1153N	ENST00000380152		1153	aaG/aaC																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40738997	40738997	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	54	508	0	ENST00000373198.4:c.3287C>A	p.Ala1096Asp	p.A1096D	ENST00000373198	NM_133170.3	1096	gCt/gAt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739666	41739666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	50	632	1	ENST00000242208.4:c.307A>G	p.Ile103Val	p.I103V	ENST00000242208	NM_002192.2	103	Ata/Gta																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0050575-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			507	141	472	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	112	391	0	ENST00000346208.3:c.1275dupA	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																																																															
IRF4	3662	MSKCC	GRCh37	6	401627	401627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	57	527	0	ENST00000380956.4:c.949C>T	p.Leu317Phe	p.L317F	ENST00000380956	NM_001195286.1	317	Ctc/Ttc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074067	8074067	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	63	315	0	ENST00000377482.5:c.592A>G	p.Arg198Gly	p.R198G	ENST00000377482	NM_018948.3	198	Agg/Ggg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18762564	18762565	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0050643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	80	270	0	ENST00000266497.5:c.4059+2dup		p.X1353_splice	ENST00000266497		1353																																																																																
BRCA1	672	MSKCC	GRCh37	17	41242955	41242990	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTACCTGAGTGGTTAAAATGTCACTCTGAGAGGA	TTTTACCTGAGTGGTTAAAATGTCACTCTGAGAGGA	-			P-0050643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	190	320	0	ENST00000357654.3:c.4156_4185+6del		p.X1386_splice	ENST00000357654	NM_007294.3	1386																																																																																
KIT	3815	MSKCC	GRCh37	4	55603374	55603374	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	102	291	0	ENST00000288135.5:c.2730T>G	p.Asp910Glu	p.D910E	ENST00000288135	NM_000222.2	910	gaT/gaG																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974899	15974899	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	49	379	0	ENST00000268712.3:c.3976C>T	p.Arg1326Ter	p.R1326*	ENST00000268712	NM_006311.3	1326	Cga/Tga																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98238417	98238417	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137903539		P-0050645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	58	427	2	ENST00000331920.6:c.1627C>T	p.Arg543Cys	p.R543C	ENST00000331920	NM_000264.3	543	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023637	27023638	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTCCAAGCCGC			P-0050645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	28	300	0	ENST00000324856.7:c.748_758dup	p.Ser255ArgfsTer112	p.S255Rfs*112	ENST00000324856	NM_006015.4	248	ggc/ggCTCCAAGCCGCc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087568	27087569	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	32	551	0	ENST00000324856.7:c.2143dupT	p.Ser715PhefsTer102	p.S715Ffs*102	ENST00000324856	NM_006015.4	714	-/T																																																																															
PARP1	142	MSKCC	GRCh37	1	226552773	226552773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	119	490	0	ENST00000366794.5:c.2588G>T	p.Gly863Val	p.G863V	ENST00000366794	NM_001618.3	863	gGg/gTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115705	8115718	+	frameshift_variant	Frame_Shift_Del	DEL	AACAGACCCCTGAC	AACAGACCCCTGAC	-			P-0050645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	65	302	0	ENST00000346208.3:c.1051_1064del	p.Asn351TyrfsTer15	p.N351Yfs*15	ENST00000346208		351	AACAGACCCCTGACt/t																																																																															
CBFB	865	MSKCC	GRCh37	16	67063327	67063341	+	inframe_deletion	In_Frame_Del	DEL	CCGACCAGAGAAGCA	CCGACCAGAGAAGCA	-			P-0050645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	24	195	0	ENST00000412916.2:c.17_31del	p.Pro6_Lys11delinsGln	p.P6_K11delinsQ	ENST00000412916		6	cCCGACCAGAGAAGCAag/cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0050652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	27	179	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0050652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	47	158	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604717	48604717	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	33	161	1	ENST00000342988.3:c.1541del	p.Pro514GlnfsTer23	p.P514Qfs*23	ENST00000342988	NM_005359.5	513	taC/ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	72	642	0	ENST00000269305.4:c.800G>T	p.Arg267Leu	p.R267L	ENST00000269305	NM_001126112.2	267	cGg/cTg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217856	7217856	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	84	624	0	ENST00000380728.2:c.155del	p.Lys52ArgfsTer11	p.K52Rfs*11	ENST00000380728		52	aAg/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0050705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	108	637	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	36	368	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	42	467	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128321993	128321993	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	47	530	0	ENST00000265960.3:c.767A>C	p.Lys256Thr	p.K256T	ENST00000265960	NM_001006617.1	256	aAg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	288	580	31	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940512	71940512	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	147	506	0	ENST00000298229.2:c.663G>C	p.Glu221Asp	p.E221D	ENST00000298229	NM_001567.3	221	gaG/gaC																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942048	17942048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	289	649	30	ENST00000458235.1:c.2967C>A	p.Ser989Arg	p.S989R	ENST00000458235	NM_000215.3	989	agC/agA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951905	178951905	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	158	327	9	ENST00000263967.3:c.2960C>A	p.Ala987Asp	p.A987D	ENST00000263967	NM_006218.2	987	gCt/gAt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978530	70978530	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	185	452	24	ENST00000276594.2:c.1123G>C	p.Asp375His	p.D375H	ENST00000276594	NM_024504.3	375	Gat/Cat																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933908	39933908	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	274	717	36	ENST00000378444.4:c.691C>G	p.Gln231Glu	p.Q231E	ENST00000378444	NM_001123385.1	231	Cag/Gag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0050748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	38	382	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0050748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	80	496	0	ENST00000269305.4:c.560-2A>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	157	350	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591085	67591085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	214	265	0	ENST00000274335.5:c.1678G>T	p.Asp560Tyr	p.D560Y	ENST00000274335		560	Gac/Tac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106861	27106861	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	117	608	0	ENST00000324856.7:c.6472C>T	p.Arg2158Ter	p.R2158*	ENST00000324856	NM_006015.4	2158	Cga/Tga																																																																															
TET2	54790	MSKCC	GRCh37	4	106164733	106164733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	124	332	0	ENST00000380013.4:c.3601C>T	p.Arg1201Cys	p.R1201C	ENST00000380013	NM_001127208.2	1201	Cgc/Tgc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81990399	81990399	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199530350		P-0050749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	85	505	2	ENST00000359376.3:c.3670C>T	p.Arg1224Cys	p.R1224C	ENST00000359376	NM_002661.3	1224	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112162945	112162945	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs1114167599		P-0050749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	150	278	0	ENST00000257430.4:c.1548+1G>T		p.X516_splice	ENST00000257430	NM_000038.5	516																																																																																
RRAS2	22800	MSKCC	GRCh37	11	14317388	14317388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	70	302	1	ENST00000256196.4:c.122C>T	p.Thr41Met	p.T41M	ENST00000256196		41	aCg/aTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539077	187539077	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	68	495	0	ENST00000441802.2:c.8663T>C	p.Val2888Ala	p.V2888A	ENST00000441802	NM_005245.3	2888	gTt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112173420	112173420	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	41	321	0	ENST00000257430.4:c.2129del	p.Leu710ProfsTer8	p.L710Pfs*8	ENST00000257430	NM_000038.5	710	cTc/cc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2214514	2214516	+	missense_variant	Missense_Mutation	ONP	GTC	GTC	TTT			P-0050749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	125	702	0	ENST00000398665.3:c.1842_1844delinsTTT	p.Ser615Leu	p.S615L	ENST00000398665	NM_032482.2	614	ctGTCg/ctTTTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	209	357	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0050750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	168	615	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670327	134670327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	88	348	0	ENST00000398015.3:c.238C>T	p.Arg80Trp	p.R80W	ENST00000398015	NM_004441.4	80	Cgg/Tgg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389303	8389303	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	92	407	0	ENST00000356435.5:c.4315T>A	p.Phe1439Ile	p.F1439I	ENST00000356435		1439	Ttt/Att																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971048	21971077	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCGCCCCGGCCCGGTGCAGCACCACCA	GCCGCGCCCCGGCCCGGTGCAGCACCACCA	C			P-0050750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	182	475	0	ENST00000304494.5:c.281_310delinsG	p.Leu94ArgfsTer16	p.L94Rfs*16	ENST00000304494	NM_000077.4	94	cTGGTGGTGCTGCACCGGGCCGGGGCGCGGCtg/cGtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0050758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	85	475	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913385		P-0050758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	63	395	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61197622	61197623	+	missense_variant	Missense_Mutation	DNP	GC	GC	CT			P-0050758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	40	342	1	ENST00000301761.2:c.4_5delinsCT	p.Ala2Leu	p.A2L	ENST00000301761	NM_017841.2	2	GCg/CTg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46281784	46281784	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	63	449	0	ENST00000371998.3:c.4231C>G	p.Pro1411Ala	p.P1411A	ENST00000371998		1411	Ccc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0050774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	277	547	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0050774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	107	290	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0050774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	148	350	0	ENST00000256078.4:c.34_35delGGinsCT	p.Gly12Leu	p.G12L	ENST00000256078	NM_033360.2	12	GGt/CTt																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743940	46743940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	103	402	0	ENST00000371975.4:c.2230C>T	p.Arg744Trp	p.R744W	ENST00000371975	NM_003579.3	744	Cgg/Tgg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953978	17953978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	202	521	0	ENST00000458235.1:c.424C>T	p.Arg142Cys	p.R142C	ENST00000458235	NM_000215.3	142	Cgc/Tgc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93955095	93955095	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	81	332	0	ENST00000369303.4:c.2803A>C	p.Ile935Leu	p.I935L	ENST00000369303	NM_004440.3	935	Att/Ctt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	249	381	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	440	566	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	41	352	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588849	69588849	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	117	567	1	ENST00000168712.1:c.387C>A	p.Phe129Leu	p.F129L	ENST00000168712	NM_002007.2	129	ttC/ttA																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032031	26032031	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	110	472	0	ENST00000244661.2:c.258G>C	p.Gln86His	p.Q86H	ENST00000244661	NM_003537.3	86	caG/caC																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675183	30675183	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	164	574	0	ENST00000376406.3:c.3062G>C	p.Arg1021Thr	p.R1021T	ENST00000376406	NM_014641.2	1021	aGa/aCa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004998	150004998	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	148	431	0	ENST00000253339.5:c.1227G>C	p.Met409Ile	p.M409I	ENST00000253339		409	atG/atC																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522581	176522581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	159	605	0	ENST00000292408.4:c.1678G>A	p.Glu560Lys	p.E560K	ENST00000292408	NM_213647.1	560	Gag/Aag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528774	8528774	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	45	346	0	ENST00000356435.5:c.358C>A	p.Gln120Lys	p.Q120K	ENST00000356435		120	Caa/Aaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177011	56177011	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	248	363	0	ENST00000399503.3:c.2281del	p.Ile761Ter	p.I761*	ENST00000399503	NM_005921.1	761	Ata/ta																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259934	16259934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	157	562	1	ENST00000375759.3:c.7199C>T	p.Ser2400Phe	p.S2400F	ENST00000375759	NM_015001.2	2400	tCt/tTt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248067	110248067	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	57	481	0	ENST00000374672.4:c.1405G>C	p.Asp469His	p.D469H	ENST00000374672	NM_004235.4	469	Gac/Cac																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257272	16257272	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	140	553	0	ENST00000375759.3:c.4537G>C	p.Glu1513Gln	p.E1513Q	ENST00000375759	NM_015001.2	1513	Gag/Cag																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032111	26032111	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	109	473	0	ENST00000244661.2:c.178G>C	p.Glu60Gln	p.E60Q	ENST00000244661	NM_003537.3	60	Gag/Cag																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964366	70964366	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	49	386	0	ENST00000276594.2:c.1662C>G	p.Ile554Met	p.I554M	ENST00000276594	NM_024504.3	554	atC/atG																																																																															
ROS1	6098	MSKCC	GRCh37	6	117678077	117678077	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs199725375		P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	73	312	0	ENST00000368508.3:c.3856C>T	p.Arg1286Cys	p.R1286C	ENST00000368508	NM_002944.2	1286	Cgc/Tgc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871836	12871836	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	111	264	0	ENST00000228872.4:c.553G>C	p.Glu185Gln	p.E185Q	ENST00000228872	NM_004064.3	185	Gag/Cag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390923	89390923	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	105	336	0	ENST00000336596.2:c.989G>C	p.Arg330Thr	p.R330T	ENST00000336596	NM_005233.5	330	aGa/aCa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031939	26031939	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	75	439	0	ENST00000244661.2:c.350G>C	p.Arg117Pro	p.R117P	ENST00000244661	NM_003537.3	117	cGa/cCa																																																																															
SRC	6714	MSKCC	GRCh37	20	36030845	36030845	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	83	351	0	ENST00000358208.4:c.1124C>G	p.Ser375Ter	p.S375*	ENST00000358208		375	tCa/tGa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831584	72831584	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	158	595	0	ENST00000268489.5:c.4997C>G	p.Ser1666Cys	p.S1666C	ENST00000268489	NM_006885.3	1666	tCc/tGc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89352058	89352058	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	144	540	0	ENST00000301030.4:c.893-1G>C		p.X298_splice	ENST00000301030	NM_001256183.1	298																																																																																
SPEN	23013	MSKCC	GRCh37	1	16261277	16261277	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	39	510	0	ENST00000375759.3:c.8542C>T	p.Gln2848Ter	p.Q2848*	ENST00000375759	NM_015001.2	2848	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023733	27023733	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	131	367	0	ENST00000324856.7:c.839C>A	p.Ser280Tyr	p.S280Y	ENST00000324856	NM_006015.4	280	tCc/tAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092802	27092802	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	146	509	0	ENST00000324856.7:c.2823C>G	p.Ile941Met	p.I941M	ENST00000324856	NM_006015.4	941	atC/atG																																																																															
JAK1	3716	MSKCC	GRCh37	1	65304213	65304213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	105	397	0	ENST00000342505.4:c.2902C>T	p.Leu968Phe	p.L968F	ENST00000342505	NM_002227.2	968	Ctt/Ttt																																																																															
SESN3	143686	MSKCC	GRCh37	11	94917583	94917583	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	67	327	0	ENST00000536441.1:c.937+1G>C		p.X313_splice	ENST00000536441	NM_144665.3	313																																																																																
PGR	5241	MSKCC	GRCh37	11	100999114	100999114	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	71	591	0	ENST00000325455.5:c.688G>C	p.Glu230Gln	p.E230Q	ENST00000325455	NM_001202474.3	230	Gag/Cag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445476	49445476	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1282	161	678	0	ENST00000301067.7:c.1990C>G	p.Pro664Ala	p.P664A	ENST00000301067	NM_003482.3	664	Cca/Gca																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50479282	50479282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	103	376	0	ENST00000394963.4:c.130C>T	p.Pro44Ser	p.P44S	ENST00000394963	NM_003076.4	44	Ccg/Tcg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858636	57858636	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	138	431	0	ENST00000228682.2:c.374C>A	p.Ser125Tyr	p.S125Y	ENST00000228682	NM_005269.2	125	tCc/tAc																																																																															
MSI1	4440	MSKCC	GRCh37	12	120805836	120805836	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	197	630	0	ENST00000257552.2:c.242C>G	p.Ser81Trp	p.S81W	ENST00000257552	NM_002442.3	81	tCg/tGg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562878	95562878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	86	344	0	ENST00000343455.3:c.4379C>T	p.Ser1460Leu	p.S1460L	ENST00000343455	NM_177438.2	1460	tCa/tTa																																																																															
IDH2	3418	MSKCC	GRCh37	15	90630700	90630700	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	173	580	0	ENST00000330062.3:c.786C>G	p.Phe262Leu	p.F262L	ENST00000330062	NM_002168.2	262	ttC/ttG																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351842	89351842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	190	688	1	ENST00000301030.4:c.1108G>A	p.Asp370Asn	p.D370N	ENST00000301030	NM_001256183.1	370	Gac/Aac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448364	56448364	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	245	672	0	ENST00000407977.2:c.283G>C	p.Asp95His	p.D95H	ENST00000407977		95	Gat/Cat																																																																															
TCF3	6929	MSKCC	GRCh37	19	1625613	1625613	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	170	623	0	ENST00000344749.5:c.461C>G	p.Ser154Cys	p.S154C	ENST00000344749	NM_001136139.2	154	tCc/tGc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18943097	18943097	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	110	324	0	ENST00000262803.5:c.79G>C	p.Asp27His	p.D27H	ENST00000262803	NM_002911.3	27	Gac/Cac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210423	36210423	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	58	532	0	ENST00000222270.7:c.416C>G	p.Ser139Cys	p.S139C	ENST00000222270	NM_014727.1	139	tCt/tGt																																																																															
AKT2	208	MSKCC	GRCh37	19	40762869	40762869	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	146	589	0	ENST00000392038.2:c.139C>G	p.Gln47Glu	p.Q47E	ENST00000392038	NM_001626.4	47	Cag/Gag																																																																															
XPO1	7514	MSKCC	GRCh37	2	61721139	61721139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	133	455	0	ENST00000401558.2:c.1135G>A	p.Glu379Lys	p.E379K	ENST00000401558	NM_003400.3	379	Gaa/Aaa																																																																															
BARD1	580	MSKCC	GRCh37	2	215610520	215610520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	142	446	0	ENST00000260947.4:c.1736C>T	p.Ser579Leu	p.S579L	ENST00000260947	NM_000465.2	579	tCa/tTa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46281219	46281219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	113	488	0	ENST00000371998.3:c.4016G>A	p.Arg1339Lys	p.R1339K	ENST00000371998		1339	aGa/aAa																																																																															
NF2	4771	MSKCC	GRCh37	22	30069267	30069268	+	missense_variant	Missense_Mutation	DNP	GA	GA	CT			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	128	484	0	ENST00000338641.4:c.1132_1133delinsCT	p.Glu378Leu	p.E378L	ENST00000338641	NM_000268.3	378	GAg/CTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41545766	41545766	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	138	401	0	ENST00000263253.7:c.2381C>T	p.Ala794Val	p.A794V	ENST00000263253	NM_001429.3	794	gCa/gTa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37042470	37042470	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	101	365	1	ENST00000231790.2:c.232G>T	p.Glu78Ter	p.E78*	ENST00000231790	NM_000249.3	78	Gaa/Taa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52595864	52595864	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	152	551	0	ENST00000394830.3:c.4051G>C	p.Asp1351His	p.D1351H	ENST00000394830	NM_018313.4	1351	Gac/Cac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534289	187534289	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	109	520	0	ENST00000441802.2:c.9437G>C	p.Arg3146Thr	p.R3146T	ENST00000441802	NM_005245.3	3146	aGa/aCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540899	187540899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	108	341	0	ENST00000441802.2:c.6841C>T	p.Pro2281Ser	p.P2281S	ENST00000441802	NM_005245.3	2281	Cct/Tct																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637250	176637250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	164	592	1	ENST00000439151.2:c.1850C>T	p.Ser617Leu	p.S617L	ENST00000439151	NM_022455.4	617	tCa/tTa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637597	176637597	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	181	519	1	ENST00000439151.2:c.2197C>A	p.Leu733Met	p.L733M	ENST00000439151	NM_022455.4	733	Ctg/Atg																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158619	26158619	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1358692800		P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	68	281	0	ENST00000289316.2:c.222C>G	p.Ile74Met	p.I74M	ENST00000289316	NM_138720.2	74	atC/atG																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681601	30681601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	146	485	0	ENST00000376406.3:c.496G>A	p.Glu166Lys	p.E166K	ENST00000376406	NM_014641.2	166	Gag/Aag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100145	157100145	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	23	71	0	ENST00000346085.5:c.1082C>A	p.Ser361Ter	p.S361*	ENST00000346085	NM_020732.3	361	tCg/tAg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527522	157527522	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	159	537	0	ENST00000346085.5:c.5247G>C	p.Glu1749Asp	p.E1749D	ENST00000346085	NM_020732.3	1749	gaG/gaC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878431	151878431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	192	643	0	ENST00000262189.6:c.6514G>C	p.Asp2172His	p.D2172H	ENST00000262189	NM_170606.2	2172	Gac/Cac																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80646056	80646056	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	61	225	0	ENST00000286548.4:c.96C>A	p.Asp32Glu	p.D32E	ENST00000286548	NM_002072.3	32	gaC/gaA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922324	178922324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793732		P-0044268-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			525	56	434	0	ENST00000263967.3:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000263967	NM_006218.2	365	Gaa/Aaa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118339521	118339521	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044268-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			395	72	453	0	ENST00000534358.1:c.464A>T	p.Glu155Val	p.E155V	ENST00000534358	NM_005933.3	155	gAa/gTa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18658373	18658373	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044268-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			370	37	362	0	ENST00000266497.5:c.3178C>T	p.Gln1060Ter	p.Q1060*	ENST00000266497		1060	Caa/Taa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39002737	39002737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044268-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	52	340	0	ENST00000357387.3:c.292G>A	p.Glu98Lys	p.E98K	ENST00000357387	NM_152756.3	98	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0047832-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			439	253	472	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047832-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			269	118	340	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412647	63412648	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047832-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			871	47	567	1	ENST00000330258.3:c.519dupT	p.Ser174Ter	p.S174*	ENST00000330258	NM_152424.3	173	-/T																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0050711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	42	298	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579362	7579362	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	36	590	1	ENST00000269305.4:c.325T>A	p.Phe109Ile	p.F109I	ENST00000269305	NM_001126112.2	109	Ttc/Atc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81973512	81973512	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	45	393	0	ENST00000359376.3:c.3329G>T	p.Ser1110Ile	p.S1110I	ENST00000359376	NM_002661.3	1110	aGc/aTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739056	40739056	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	38	540	0	ENST00000373198.4:c.3228C>A	p.Cys1076Ter	p.C1076*	ENST00000373198	NM_133170.3	1076	tgC/tgA																																																																															
RAC2	5880	MSKCC	GRCh37	22	37628898	37628898	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	49	635	0	ENST00000249071.6:c.168G>T	p.Trp56Cys	p.W56C	ENST00000249071	NM_002872.4	56	tgG/tgT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540017	187540017	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	36	318	0	ENST00000441802.2:c.7723G>T	p.Gly2575Ter	p.G2575*	ENST00000441802	NM_005245.3	2575	Gga/Tga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176720871	176720871	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	41	435	0	ENST00000439151.2:c.6502G>T	p.Gly2168Trp	p.G2168W	ENST00000439151	NM_022455.4	2168	Ggg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087395	27087396	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	90	580	0	ENST00000324856.7:c.1970dup	p.Ser658GlufsTer18	p.S658Efs*18	ENST00000324856	NM_006015.4	657	ctg/cTtg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105611	27105611	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	63	537	0	ENST00000324856.7:c.5222A>G	p.Gln1741Arg	p.Q1741R	ENST00000324856	NM_006015.4	1741	cAg/cGg																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56787253	56787253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	90	485	0	ENST00000337432.4:c.739C>A	p.Pro247Thr	p.P247T	ENST00000337432	NM_058216.2	247	Cca/Aca																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876260	35876260	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	42	508	0	ENST00000303115.3:c.1052C>G	p.Ser351Cys	p.S351C	ENST00000303115	NM_002185.3	351	tCt/tGt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373757	118373757	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AA			P-0050726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	50	332	0	ENST00000534358.1:c.7150delinsAA	p.Gln2384LysfsTer15	p.Q2384Kfs*15	ENST00000534358	NM_005933.3	2384	Caa/AAaa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808979	1808979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	61	513	0	ENST00000260795.2:c.2411C>T	p.Ser804Leu	p.S804L	ENST00000260795		804	tCg/tTg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38064160	38064160	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	55	362	0	ENST00000250448.2:c.18G>C	p.Lys6Asn	p.K6N	ENST00000250448	NM_004496.3	6	aaG/aaC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877869	151877887	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGGTCCAGGAAGTTGGG	ACAGGTCCAGGAAGTTGGG	-			P-0050729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	22	336	0	ENST00000262189.6:c.7058_7076del	p.Ser2353CysfsTer6	p.S2353Cfs*6	ENST00000262189	NM_170606.2	2353	tCCCAACTTCCTGGACCTGTg/tg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942035	44942035	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0050729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	33	118	0	ENST00000377967.4:c.3284+1G>T		p.X1095_splice	ENST00000377967	NM_021140.2	1095																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38061137	38061160	+	inframe_deletion	In_Frame_Del	DEL	GCCCCCGCTTCCGCTCCCGCCCCC	GCCCCCGCTTCCGCTCCCGCCCCC	-			P-0050729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	67	369	0	ENST00000250448.2:c.829_852del	p.Gly277_Gly284del	p.G277_G284del	ENST00000250448	NM_004496.3	277	GGGGGCGGGAGCGGAAGCGGGGGC/-																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061169	38061200	+	protein_altering_variant	In_Frame_Del	DEL	CCCCCGGCTGCTTCTCGCACTTGAAGCGCTTC	CCCCCGGCTGCTTCTCGCACTTGAAGCGCTTC	GG			P-0050729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	73	517	2	ENST00000250448.2:c.789_820delinsCC	p.Gln263_Ala274delinsHisPro	p.Q263_A274delinsHP	ENST00000250448	NM_004496.3	263	caGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGcc/caCCcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	81	380	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	169	549	0	ENST00000269305.4:c.842A>G	p.Asp281Gly	p.D281G	ENST00000269305	NM_001126112.2	281	gAc/gGc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245372	153245372	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	43	393	0	ENST00000281708.4:c.1819del	p.Asp607IlefsTer21	p.D607Ifs*21	ENST00000281708	NM_033632.3	607	Gat/at																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	84	446	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0050804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	83	193	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8317907	8317907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	38	296	0	ENST00000356435.5:c.5706G>T	p.Glu1902Asp	p.E1902D	ENST00000356435		1902	gaG/gaT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0050806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	21	537	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0050806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	70	417	1	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0050806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	137	643	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0050806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	57	388	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175322	112175322	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0050806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	62	252	0	ENST00000257430.4:c.4031C>G	p.Ser1344Ter	p.S1344*	ENST00000257430	NM_000038.5	1344	tCa/tGa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244257	5244257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	90	992	0	ENST00000357368.4:c.1225G>A	p.Gly409Ser	p.G409S	ENST00000357368	NM_002850.3	409	Ggc/Agc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797269	32797269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	119	800	2	ENST00000374899.4:c.1840C>T	p.Arg614Cys	p.R614C	ENST00000374899	NM_018833.2	614	Cgt/Tgt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47685242	47685242	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	22	364	0	ENST00000347630.2:c.708C>A	p.Ser236Arg	p.S236R	ENST00000347630	NM_001007230.1	236	agC/agA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0050861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	59	564	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275733	41275733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	29	531	0	ENST00000349496.5:c.1628C>T	p.Ala543Val	p.A543V	ENST00000349496	NM_001904.3	543	gCa/gTa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117687279	117687280	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	45	346	0	ENST00000368508.3:c.2771dup	p.Asn924LysfsTer11	p.N924Kfs*11	ENST00000368508	NM_002944.2	924	aat/aaAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041566	47041566	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0050861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	67	635	0	ENST00000329236.7:c.1557C>G	p.Tyr519Ter	p.Y519*	ENST00000329236	NM_001204466.1	519	taC/taG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	20	385	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520006		P-0050863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	53	652	0	ENST00000269305.4:c.821T>G	p.Val274Gly	p.V274G	ENST00000269305	NM_001126112.2	274	gTt/gGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	95	289	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721237	176721237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	66	365	0	ENST00000439151.2:c.6868C>T	p.Pro2290Ser	p.P2290S	ENST00000439151	NM_022455.4	2290	Ccc/Tcc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680128	30680128	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	126	508	0	ENST00000376406.3:c.1591C>G	p.Pro531Ala	p.P531A	ENST00000376406	NM_014641.2	531	Cca/Gca																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0050795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	28	311	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119775	70119776	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0050795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	137	667	0	ENST00000245479.2:c.779dup	p.Glu261ArgfsTer35	p.E261Rfs*35	ENST00000245479	NM_000346.3	259	-/C																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0050655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	65	580	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	67	394	1	ENST00000263967.3:c.3012G>A	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atA																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054856	5054857	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0050655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	60	381	0	ENST00000381652.3:c.909_910del	p.His303GlnfsTer4	p.H303Qfs*4	ENST00000381652	NM_004972.3	303	cAT/c																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514089	69514089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	81	663	0	ENST00000294312.3:c.592G>T	p.Asp198Tyr	p.D198Y	ENST00000294312	NM_005117.2	198	Gac/Tac																																																																															
POLE	5426	MSKCC	GRCh37	12	133235899	133235899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	144	590	0	ENST00000320574.5:c.3257G>A	p.Gly1086Asp	p.G1086D	ENST00000320574	NM_006231.2	1086	gGc/gAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2108782	2108782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	102	711	0	ENST00000219476.3:c.883G>T	p.Ala295Ser	p.A295S	ENST00000219476	NM_000548.3	295	Gcc/Tcc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9984843	9984843	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0050655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	48	355	0	ENST00000330684.3:c.1122G>T	p.Lys374Asn	p.K374N	ENST00000330684	NM_001134407.1	374	aaG/aaT																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46271015	46271015	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	97	526	1	ENST00000371998.3:c.3139C>T	p.Gln1047Ter	p.Q1047*	ENST00000371998		1047	Cag/Tag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86633857	86633858	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0050655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	49	361	0	ENST00000274376.6:c.967_968del	p.Leu323LysfsTer4	p.L323Kfs*4	ENST00000274376	NM_002890.2	322	aaTTta/aata																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0050656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	239	704	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0050656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	73	285	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593491	48593494	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0050656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	71	275	0	ENST00000342988.3:c.1245_1248del	p.Asp415GlufsTer20	p.D415Efs*20	ENST00000342988	NM_005359.5	414	ttAGAC/tt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831584	72831584	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	109	616	0	ENST00000268489.5:c.4997C>G	p.Ser1666Cys	p.S1666C	ENST00000268489	NM_006885.3	1666	tCc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587782082		P-0050657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	26	513	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs483352695		P-0050657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	24	508	0	ENST00000269305.4:c.736A>T	p.Met246Leu	p.M246L	ENST00000269305	NM_001126112.2	246	Atg/Ttg																																																																															
MET	4233	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0050657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	366	561	0	ENST00000397752.3:c.3028+3A>G		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0050664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	199	600	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0050664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	95	278	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0050664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	48	252	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29664546	29664546	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	88	446	0	ENST00000358273.4:c.6591del	p.Phe2197LeufsTer3	p.F2197Lfs*3	ENST00000358273	NM_001042492.2	2196	acT/ac																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222221	5222221	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	62	436	1	ENST00000357368.4:c.3114G>T	p.Lys1038Asn	p.K1038N	ENST00000357368	NM_002850.3	1038	aaG/aaT																																																																															
SYK	6850	MSKCC	GRCh37	9	93639851	93639851	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0050664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	12	206	0	ENST00000375746.1:c.1182-2A>G		p.X394_splice	ENST00000375746	NM_001174167.1	394																																																																																
AMER1	139285	MSKCC	GRCh37	X	63412087	63412087	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	163	341	0	ENST00000330258.3:c.1080del	p.Cys361AlafsTer3	p.C361Afs*3	ENST00000330258	NM_152424.3	360	tcC/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	185	436	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508824	106508824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	389	615	1	ENST00000359195.3:c.818G>A	p.Arg273His	p.R273H	ENST00000359195	NM_002649.2	273	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577146	7577156	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TAGATTACCAC	TAGATTACCAC	-			P-0050666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	227	577	0	ENST00000269305.4:c.783-1_792del		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0050668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	107	369	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483966	88483966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	62	503	0	ENST00000360948.2:c.1604G>T	p.Arg535Met	p.R535M	ENST00000360948	NM_001012338.2	535	aGg/aTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602757	10602757	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	256	759	0	ENST00000171111.5:c.821A>C	p.His274Pro	p.H274P	ENST00000171111	NM_203500.1	274	cAc/cCc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45796925	45796925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	82	534	0	ENST00000372115.3:c.1363G>A	p.Val455Ile	p.V455I	ENST00000372115	NM_001048171.1	455	Gta/Ata																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106717	27106717	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	150	558	0	ENST00000324856.7:c.6328G>T	p.Ala2110Ser	p.A2110S	ENST00000324856	NM_006015.4	2110	Gcc/Tcc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670531	134670531	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs62270337		P-0050668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	77	576	0	ENST00000398015.3:c.442C>A	p.Gln148Lys	p.Q148K	ENST00000398015	NM_004441.4	148	Cag/Aag																																																																															
MSH2	4436	MSKCC	GRCh37	2	47709929	47709930	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	T			P-0050668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	42	254	0	ENST00000233146.2:c.2646_2647delinsT	p.Lys882AsnfsTer10	p.K882Nfs*10	ENST00000233146	NM_000251.2	882	aaAAtt/aaTtt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0050671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	138	543	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129169	64129169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	90	839	0	ENST00000334205.4:c.707C>T	p.Ser236Leu	p.S236L	ENST00000334205	NM_003942.2	236	tCg/tTg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176050349	176050349	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	248	506	0	ENST00000367669.3:c.1216C>T	p.Arg406Ter	p.R406*	ENST00000367669	NM_022457.5	406	Cga/Tga																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39609395	39609395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	103	312	0	ENST00000262039.4:c.1697G>A	p.Arg566His	p.R566H	ENST00000262039	NM_002647.2	566	cGt/cAt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741465	17741465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	88	626	0	ENST00000250003.3:c.136C>A	p.Leu46Met	p.L46M	ENST00000250003	NM_002478.4	46	Ctg/Atg																																																																															
MGA	23269	MSKCC	GRCh37	15	42005475	42005475	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	207	668	0	ENST00000219905.7:c.3211T>A	p.Cys1071Ser	p.C1071S	ENST00000219905	NM_001164273.1	1071	Tgc/Agc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89352058	89352058	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0050671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	172	620	0	ENST00000301030.4:c.893-1G>C		p.X298_splice	ENST00000301030	NM_001256183.1	298																																																																																
KDR	3791	MSKCC	GRCh37	4	55955553	55955553	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	66	576	0	ENST00000263923.4:c.3392C>G	p.Thr1131Ser	p.T1131S	ENST00000263923	NM_002253.2	1131	aCt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0050672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	55	732	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	59	347	0	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT																																																																															
TP53	7157	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	90	754	0	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0050673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	107	405	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968235	2968235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	115	762	0	ENST00000396946.4:c.1751G>A	p.Arg584His	p.R584H	ENST00000396946	NM_032415.4	584	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	210	423	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0050674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	143	630	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
ETV6	2120	MSKCC	GRCh37	12	11905465	11905465	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	43	376	1	ENST00000396373.4:c.115C>T	p.Arg39Ter	p.R39*	ENST00000396373	NM_001987.4	39	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0043139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	16	444	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68772235	68772236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0043139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	124	885	0	ENST00000261769.5:c.84_85insAG	p.His29SerfsTer28	p.H29Sfs*28	ENST00000261769	NM_004360.3	28	-/AG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0050459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	107	390	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0050459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	120	383	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0050459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	213	479	1	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0050459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	92	326	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249517	153249517	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	102	439	0	ENST00000281708.4:c.1261A>G	p.Thr421Ala	p.T421A	ENST00000281708	NM_033632.3	421	Aca/Gca																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120662	94120662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	73	401	0	ENST00000369303.4:c.389C>A	p.Thr130Lys	p.T130K	ENST00000369303	NM_004440.3	130	aCa/aAa																																																																															
AGO2	27161	MSKCC	GRCh37	8	141542569	141542569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	108	498	0	ENST00000220592.5:c.2417C>T	p.Ala806Val	p.A806V	ENST00000220592	NM_012154.3	806	gCt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0050464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	18	245	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0050464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	66	332	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0050464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	124	513	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0050464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	23	397	2	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0050464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	105	441	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	72	210	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371684	55371684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	65	487	0	ENST00000297316.4:c.374G>A	p.Arg125His	p.R125H	ENST00000297316	NM_022454.3	125	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692910	89692910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	57	430	0	ENST00000371953.3:c.394G>A	p.Gly132Ser	p.G132S	ENST00000371953	NM_000314.4	132	Ggt/Agt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910870	114910870	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0050464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	79	362	0	ENST00000543371.1:c.989C>G	p.Ser330Ter	p.S330*	ENST00000543371	NM_001198531.1	330	tCa/tGa																																																																															
ATR	545	MSKCC	GRCh37	3	142218477	142218477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	82	327	0	ENST00000350721.4:c.5372del	p.Leu1791TrpfsTer33	p.L1791Wfs*33	ENST00000350721	NM_001184.3	1791	tTg/tg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0050469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	313	384	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579469	7579470	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0050469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	224	596	0	ENST00000269305.4:c.216_217dup	p.Val73AlafsTer51	p.V73Afs*51	ENST00000269305	NM_001126112.2	73	gtg/gCGtg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098917	178098917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	174	344	0	ENST00000397062.3:c.128G>T	p.Arg43Leu	p.R43L	ENST00000397062	NM_006164.4	43	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0050470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	189	355	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987148	36987148	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0050470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	117	497	0	ENST00000354822.5:c.541A>T	p.Lys181Ter	p.K181*	ENST00000354822	NM_001079668.2	181	Aag/Tag																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987220	36987220	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	89	446	1	ENST00000354822.5:c.469del	p.Arg157AlafsTer9	p.R157Afs*9	ENST00000354822	NM_001079668.2	157	Cgc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	96	334	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RB1	5925	MSKCC	GRCh37	13	48947540	48947540	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0050524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	115	353	0	ENST00000267163.4:c.1128-1G>A		p.X376_splice	ENST00000267163	NM_000321.2	376																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71943743	71943743	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	174	670	0	ENST00000298229.2:c.1786T>A	p.Ser596Thr	p.S596T	ENST00000298229	NM_001567.3	596	Tct/Act																																																																															
MGA	23269	MSKCC	GRCh37	15	41961651	41961651	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	94	371	0	ENST00000219905.7:c.559G>C	p.Asp187His	p.D187H	ENST00000219905	NM_001164273.1	187	Gac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579182	7579348	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAACTATAAAAAAACACTGACAGGAAGCCAAAGGGTGAAGAGGAATCCCAAAGTTCCAAACAAAAGAAATGCAGGGGGATACGGCCAGGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAG	AAACTATAAAAAAACACTGACAGGAAGCCAAAGGGTGAAGAGGAATCCCAAAGTTCCAAACAAAAGAAATGCAGGGGGATACGGCCAGGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAG	-			P-0050524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	42	108	1	ENST00000269305.4:c.339_375+130del		p.X113_splice	ENST00000269305	NM_001126112.2	113																																																																																
TP53	7157	MSKCC	GRCh37	17	7579185	7579351	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTATAAAAAAACACTGACAGGAAGCCAAAGGGTGAAGAGGAATCCCAAAGTTCCAAACAAAAGAAATGCAGGGGGATACGGCCAGGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAGAAG	CTATAAAAAAACACTGACAGGAAGCCAAAGGGTGAAGAGGAATCCCAAAGTTCCAAACAAAAGAAATGCAGGGGGATACGGCCAGGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAGAAG	-			P-0050524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	22	126	0	ENST00000269305.4:c.336_375+127del		p.X112_splice	ENST00000269305	NM_001126112.2	112																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15311616	15311625	+	frameshift_variant	Frame_Shift_Del	DEL	GCTAGCAGCA	GCTAGCAGCA	-			P-0050524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	22	142	0	ENST00000263388.2:c.92_101del	p.Leu31ArgfsTer202	p.L31Rfs*202	ENST00000263388	NM_000435.2	31	cTGCTGCTAGCg/cg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096076	178096076	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	46	400	0	ENST00000397062.3:c.1255G>C	p.Asp419His	p.D419H	ENST00000397062	NM_006164.4	419	Gat/Cat																																																																															
CD274	29126	MSKCC	GRCh37	9	5463032	5463032	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	60	275	0	ENST00000381577.3:c.593G>C	p.Arg198Thr	p.R198T	ENST00000381577	NM_014143.3	198	aGa/aCa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117378	115117379	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	TA	TA	-			P-0050539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	364	342	0	ENST00000257566.3:c.795_796del	p.Tyr265Ter	p.Y265*	ENST00000257566	NM_016569.3	265	taTAgt/tagt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060696	38060697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGCC			P-0050539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	144	929	1	ENST00000250448.2:c.1288_1292dup	p.Thr432AlafsTer10	p.T432Afs*10	ENST00000250448	NM_004496.3	431	tct/tcGGCTCt																																																																															
CDH1	999	MSKCC	GRCh37	16	68842374	68842375	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0050539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	103	499	0	ENST00000261769.5:c.438_439del	p.Pro147TrpfsTer20	p.P147Wfs*20	ENST00000261769	NM_004360.3	145	tcCTct/tcct																																																																															
CDK12	51755	MSKCC	GRCh37	17	37646831	37646831	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	152	365	0	ENST00000447079.4:c.1956del	p.Lys652AsnfsTer3	p.K652Nfs*3	ENST00000447079	NM_015083.1	651	tcA/tc																																																																															
APC	324	MSKCC	GRCh37	5	112173386	112173386	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	77	324	0	ENST00000257430.4:c.2095T>A	p.Trp699Arg	p.W699R	ENST00000257430	NM_000038.5	699	Tgg/Agg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502735	149502735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	359	631	0	ENST00000261799.4:c.2053C>T	p.Arg685Cys	p.R685C	ENST00000261799	NM_002609.3	685	Cgc/Tgc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730114	41730114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	105	398	0	ENST00000242208.4:c.415G>A	p.Glu139Lys	p.E139K	ENST00000242208	NM_002192.2	139	Gag/Aag																																																																															
EP300	2033	MSKCC	GRCh37	22	41569662	41569662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	82	284	0	ENST00000263253.7:c.4653G>T	p.Lys1551Asn	p.K1551N	ENST00000263253	NM_001429.3	1551	aaG/aaT																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495647	72495647	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0050552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	116	392	0	ENST00000477973.2:c.423G>C	p.Arg142Thr	p.R142T	ENST00000477973	NM_012234.5	142	aGa/aCa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061105	38061134	+	frameshift_variant	Frame_Shift_Del	DEL	TTGCGGCTCTCAGGGCCGCCCTTGGCGCCG	TTGCGGCTCTCAGGGCCGCCCTTGGCGCCG	C			P-0050552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	24	122	0	ENST00000250448.2:c.855_884delinsG	p.Ser285ArgfsTer8	p.S285Rfs*8	ENST00000250448	NM_004496.3	285	agCGGCGCCAAGGGCGGCCCTGAGAGCCGCAAg/agGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0050553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	77	518	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	66	738	0	ENST00000347630.2:c.397T>A	p.Phe133Ile	p.F133I	ENST00000347630	NM_001007230.1	133	Ttc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112175574	112175575	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAA			P-0050553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	61	531	0	ENST00000257430.4:c.4286_4289dup	p.Met1431AsnfsTer8	p.M1431Nfs*8	ENST00000257430	NM_000038.5	1428	gga/ggACAAa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69058535	69058535	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	87	715	0	ENST00000288368.4:c.4179A>T	p.Gln1393His	p.Q1393H	ENST00000288368	NM_024870.2	1393	caA/caT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0050555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	38	487	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	16	339	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032566	47032566	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	39	514	0	ENST00000329236.7:c.241G>T	p.Glu81Ter	p.E81*	ENST00000329236	NM_001204466.1	81	Gag/Tag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18658295	18658295	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	99	503	0	ENST00000266497.5:c.3100C>G	p.Arg1034Gly	p.R1034G	ENST00000266497		1034	Cgt/Ggt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443695	49443695	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	15	673	0	ENST00000301067.7:c.3676C>A	p.Leu1226Ile	p.L1226I	ENST00000301067	NM_003482.3	1226	Ctc/Atc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061137	38061186	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGC	GCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGC	-			P-0050556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	188	100	0	ENST00000250448.2:c.803_852del	p.Cys268Ter	p.C268*	ENST00000250448	NM_004496.3	268	tGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGC/t																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980488	70980488	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267601982		P-0050556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	62	626	1	ENST00000276594.2:c.889G>A	p.Gly297Arg	p.G297R	ENST00000276594	NM_024504.3	297	Gga/Aga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619137	37619137	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	CAGGC			P-0050556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	202	578	0	ENST00000447079.4:c.813delinsCAGGC	p.Arg271SerfsTer28	p.R271Sfs*28	ENST00000447079	NM_015083.1	271	agA/agCAGGC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0050558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1287	571	519	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	656	712	0	ENST00000269305.4:c.643A>G	p.Ser215Gly	p.S215G	ENST00000269305	NM_001126112.2	215	Agt/Ggt																																																																															
RET	5979	MSKCC	GRCh37	10	43613868	43613868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	66	746	1	ENST00000355710.3:c.2332G>A	p.Val778Ile	p.V778I	ENST00000355710	NM_020975.4	778	Gtc/Atc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121340	29121340	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	275	724	0	ENST00000328354.6:c.335A>G	p.Asn112Ser	p.N112S	ENST00000328354	NM_007194.3	112	aAc/aGc																																																																															
CDH1	999	MSKCC	GRCh37	16	68772211	68772220	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCTGCCAG	GCTCTGCCAG	CA			P-0050619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	153	659	2	ENST00000261769.5:c.60_69delinsCA	p.Trp20CysfsTer11	p.W20Cfs*11	ENST00000261769	NM_004360.3	20	tgGCTCTGCCAG/tgCA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0050619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	203	622	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0050619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	139	341	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52723457	52723457	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	129	590	5	ENST00000322088.6:c.1318G>C	p.Asp440His	p.D440H	ENST00000322088	NM_014225.5	440	Gat/Cat																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919935	50919935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	170	787	7	ENST00000440232.2:c.3022C>T	p.Arg1008Cys	p.R1008C	ENST00000440232	NM_002691.3	1008	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	387	826	15	ENST00000269305.4:c.503A>C	p.His168Pro	p.H168P	ENST00000269305	NM_001126112.2	168	cAc/cCc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31405830	31405830	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0050624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	33	255	1	ENST00000344624.3:c.3948T>G	p.Ser1316Arg	p.S1316R	ENST00000344624		1316	agT/agG																																																																															
INSR	3643	MSKCC	GRCh37	19	7166282	7166282	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	108	721	0	ENST00000302850.5:c.1744G>T	p.Gly582Cys	p.G582C	ENST00000302850	NM_000208.2	582	Ggt/Tgt																																																																															
CDH1	999	MSKCC	GRCh37	16	68844205	68844205	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	93	691	2	ENST00000261769.5:c.793G>T	p.Glu265Ter	p.E265*	ENST00000261769	NM_004360.3	265	Gag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241694	55241694	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	67	631	0	ENST00000275493.2:c.2142G>C	p.Lys714Asn	p.K714N	ENST00000275493	NM_005228.3	714	aaG/aaC																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29099515	29099515	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	61	385	0	ENST00000328354.6:c.886G>T	p.Asp296Tyr	p.D296Y	ENST00000328354	NM_007194.3	296	Gat/Tat																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0050636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	20	569	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145430	58145430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	98	567	0	ENST00000257904.6:c.71G>T	p.Arg24Leu	p.R24L	ENST00000257904	NM_000075.3	24	cGt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0050638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	92	786	1	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0050638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	223	832	0	ENST00000397752.3:c.3028+1del		p.D1010fs	ENST00000397752	NM_000245.2	1010	Gat/at																																																																															
ATM	472	MSKCC	GRCh37	11	108155093	108155093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	60	565	0	ENST00000278616.4:c.3886C>T	p.Pro1296Ser	p.P1296S	ENST00000278616	NM_000051.3	1296	Cct/Tct																																																																															
STAT3	6774	MSKCC	GRCh37	17	40498636	40498636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	53	565	1	ENST00000264657.5:c.224C>T	p.Ser75Leu	p.S75L	ENST00000264657	NM_139276.2	75	tCg/tTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29528097	29528097	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	38	376	0	ENST00000358273.4:c.1105C>T	p.Gln369Ter	p.Q369*	ENST00000358273	NM_001042492.2	369	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710622	114710622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	54	489	1	ENST00000543371.1:c.107C>T	p.Ser36Leu	p.S36L	ENST00000543371	NM_001198531.1	36	tCg/tTg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618767	37618767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	63	617	1	ENST00000447079.4:c.443C>T	p.Ser148Leu	p.S148L	ENST00000447079	NM_015083.1	148	tCg/tTg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40447653	40447653	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	75	662	0	ENST00000345506.4:c.392G>T	p.Gly131Val	p.G131V	ENST00000345506	NM_003152.3	131	gGg/gTg																																																																															
NBN	4683	MSKCC	GRCh37	8	90993691	90993691	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	50	365	0	ENST00000265433.3:c.232G>T	p.Val78Phe	p.V78F	ENST00000265433	NM_002485.4	78	Gtt/Ttt																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5557747	5557747	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0050638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	47	431	0	ENST00000397747.3:c.761C>G	p.Ser254Ter	p.S254*	ENST00000397747	NM_025239.3	254	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0050642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	225	797	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	257	524	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69058536	69058536	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61753703		P-0050642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	114	723	1	ENST00000288368.4:c.4180C>T	p.Arg1394Trp	p.R1394W	ENST00000288368	NM_024870.2	1394	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097687	27097688	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	377	729	0	ENST00000324856.7:c.3281dup	p.Gln1095AlafsTer10	p.Q1095Afs*10	ENST00000324856	NM_006015.4	1092	-/A																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	79	396	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0036748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			667	200	663	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345809	152345809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			405	55	411	0	ENST00000359321.1:c.761C>T	p.Ser254Leu	p.S254L	ENST00000359321	NM_005431.1	254	tCa/tTa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460351	149460351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	141	540	2	ENST00000286301.3:c.286G>A	p.Ala96Thr	p.A96T	ENST00000286301	NM_005211.3	96	Gcc/Acc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683357	88683357	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	195	603	0	ENST00000372037.3:c.1480C>T	p.Arg494Ter	p.R494*	ENST00000372037	NM_004329.2	494	Cga/Tga																																																																															
IL7R	3575	MSKCC	GRCh37	5	35875632	35875632	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	128	371	0	ENST00000303115.3:c.819G>A	p.Trp273Ter	p.W273*	ENST00000303115	NM_002185.3	273	tgG/tgA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603007	48603007	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0036748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	76	288	0	ENST00000342988.3:c.1309-1G>C		p.X437_splice	ENST00000342988	NM_005359.5	437																																																																																
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	144	400	0	ENST00000371953.3:c.511C>A	p.Gln171Lys	p.Q171K	ENST00000371953	NM_000314.4	171	Cag/Aag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500432	99500432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			506	202	736	1	ENST00000268035.6:c.3865G>A	p.Glu1289Lys	p.E1289K	ENST00000268035	NM_000875.3	1289	Gag/Aag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440934	56440935	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			513	240	655	0	ENST00000407977.2:c.402dup	p.Ser135GlnfsTer6	p.S135Qfs*6	ENST00000407977		134	-/C																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0044480-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			513	1126	511	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430891	181430891	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044480-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			630	67	745	0	ENST00000325404.1:c.743C>G	p.Ala248Gly	p.A248G	ENST00000325404	NM_003106.3	248	gCc/gGc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044934	47044935	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCGACTGGCAGAAGCTGGCCTGTCTGCTCTG			P-0044480-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	98	399	0	ENST00000329236.7:c.2032_2062dup	p.Arg688LeufsTer34	p.R688Lfs*34	ENST00000329236	NM_001204466.1	676	acc/aCCGACTGGCAGAAGCTGGCCTGTCTGCTCTGcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0047246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	360	590	1	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402607	20402608	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCCGCT			P-0047246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	80	343	0	ENST00000346618.3:c.150_155dup	p.Ala52_Ala53dup	p.A52_A53dup	ENST00000346618	NM_001949.4	52	-/GCCGCT																																																																															
RAD21	5885	MSKCC	GRCh37	8	117869695	117869695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	168	269	0	ENST00000297338.2:c.499G>A	p.Asp167Asn	p.D167N	ENST00000297338	NM_006265.2	167	Gat/Aat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0050227-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			2291	142	516	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs28934873		P-0050447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	365	484	0	ENST00000269305.4:c.398T>C	p.Met133Thr	p.M133T	ENST00000269305	NM_001126112.2	133	aTg/aCg																																																																															
CD79B	974	MSKCC	GRCh37	17	62007182	62007182	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147194821		P-0050447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	161	502	0	ENST00000392795.3:c.500C>T	p.Thr167Met	p.T167M	ENST00000392795	NM_001039933.1	167	aCg/aTg																																																																															
IRF4	3662	MSKCC	GRCh37	6	395913	395913	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	186	359	0	ENST00000380956.4:c.470C>A	p.Pro157His	p.P157H	ENST00000380956	NM_001195286.1	157	cCt/cAt																																																																															
TET1	80312	MSKCC	GRCh37	10	70405157	70405157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	177	414	0	ENST00000373644.4:c.2671G>A	p.Val891Met	p.V891M	ENST00000373644	NM_030625.2	891	Gtg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446395	49446395	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	197	454	0	ENST00000301067.7:c.1210A>G	p.Met404Val	p.M404V	ENST00000301067	NM_003482.3	404	Atg/Gtg																																																																															
RB1	5925	MSKCC	GRCh37	13	48941738	48941738	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0050447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	67	189	0	ENST00000267163.4:c.1048A>T	p.Ser350Cys	p.S350C	ENST00000267163	NM_000321.2	350	Agt/Tgt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129086	2130108	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCGTGGCCCAGGCTGACGATAGCCTGAAAAACCTCCACCTGGAGCTCACGGAAACCTGTCTGGACATGATGGCTCGATACGTCTTCTCCAACTTCACGGCTGTCCCGAAGAGGTCCAGGCGGCACTACAGGGCTGGGCGGGCCTGCGGGAGCTCCACGGGCAAGCTGGGTTTCACGCTCCCTGTCTTCTAGGTCTCCTGTGGGCGAGTTCCTCCTAGCGGGTGGCAGGACCAAAACCTGGCTGGTTGGGAACAAGCTTGTCACTGTGACGACAAGCGTGGGAACCGGGACCCGGTCGTTACTAGGCCTGGACTCGGGGGAGCTGCAGTCCGGCCCGGAGTCGAGGTGACTGCACCTTCCTTTCCTCCGCGCCTGCCAGCCTCGACACCGGCTGTCCCGAGCCCAGGCCCACGTGGCACCCTCGTACCAGCCTGGGGACTAAGTCCACCCTGTGCGTGGGATTCTCTTCTCAGCTCCAGCCCCGGGGTGCATGTGAGACAGACCAAGGAGGCGCCGGCCAAGCTGGAGTCCCAGGCTGGGCAGCAGGTGTCCCGTGGGGCCCGGGATCGGGTCCGTTCCATGTCGGGTGAGCCTTGGCCCCAGCCACCTCCACACAGGCACCGGGGCTCCCTCAGTTGCTGCTGGTCCCAGTGTTCAGGAAGGCCCCGAGCCCAGGGGCCGGGGTGGCTGGCTTCAGGCCCGGCCCACGTCCTGACTCTGGGGTGAGCCTTCCACAGCTCACCCCAGAGCCGTGGAGTGGTGGAGTGTGGCCCGCTTGCTGCAGAGGGGCCTGCTCTGGGTGCTGGTGTTTCCTGCGGGTTTTCAGCTCGGCTCAGTCCTGGAGCCCTTCTCTGCTCCAGCGAGCCGTGGTCTGACTGCAGGACAGGTTCTGGGTCCCTCCCTGTGGCCCTGGGTTCACTGAGGCCAGCACTGTGGTGGGCCGTGCCCCAAGGGCAGAGCTGCCACCGTCTCTGGCTGCCTGTGGCACTAGCTTGCCAGGCTCGGGGGGAGCATTCAGCTTGAG	CCGTGGCCCAGGCTGACGATAGCCTGAAAAACCTCCACCTGGAGCTCACGGAAACCTGTCTGGACATGATGGCTCGATACGTCTTCTCCAACTTCACGGCTGTCCCGAAGAGGTCCAGGCGGCACTACAGGGCTGGGCGGGCCTGCGGGAGCTCCACGGGCAAGCTGGGTTTCACGCTCCCTGTCTTCTAGGTCTCCTGTGGGCGAGTTCCTCCTAGCGGGTGGCAGGACCAAAACCTGGCTGGTTGGGAACAAGCTTGTCACTGTGACGACAAGCGTGGGAACCGGGACCCGGTCGTTACTAGGCCTGGACTCGGGGGAGCTGCAGTCCGGCCCGGAGTCGAGGTGACTGCACCTTCCTTTCCTCCGCGCCTGCCAGCCTCGACACCGGCTGTCCCGAGCCCAGGCCCACGTGGCACCCTCGTACCAGCCTGGGGACTAAGTCCACCCTGTGCGTGGGATTCTCTTCTCAGCTCCAGCCCCGGGGTGCATGTGAGACAGACCAAGGAGGCGCCGGCCAAGCTGGAGTCCCAGGCTGGGCAGCAGGTGTCCCGTGGGGCCCGGGATCGGGTCCGTTCCATGTCGGGTGAGCCTTGGCCCCAGCCACCTCCACACAGGCACCGGGGCTCCCTCAGTTGCTGCTGGTCCCAGTGTTCAGGAAGGCCCCGAGCCCAGGGGCCGGGGTGGCTGGCTTCAGGCCCGGCCCACGTCCTGACTCTGGGGTGAGCCTTCCACAGCTCACCCCAGAGCCGTGGAGTGGTGGAGTGTGGCCCGCTTGCTGCAGAGGGGCCTGCTCTGGGTGCTGGTGTTTCCTGCGGGTTTTCAGCTCGGCTCAGTCCTGGAGCCCTTCTCTGCTCCAGCGAGCCGTGGTCTGACTGCAGGACAGGTTCTGGGTCCCTCCCTGTGGCCCTGGGTTCACTGAGGCCAGCACTGTGGTGGGCCGTGCCCCAAGGGCAGAGCTGCCACCGTCTCTGGCTGCCTGTGGCACTAGCTTGCCAGGCTCGGGGGGAGCATTCAGCTTGAG	-			P-0050447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	174	477	1	ENST00000219476.3:c.3020_3398-58del		p.X1007_splice	ENST00000219476	NM_000548.3	1007																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11113833	11113833	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0050447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	184	464	0	ENST00000344626.4:c.1943+1del		p.P647fs	ENST00000344626	NM_003072.3	647	ccG/cc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52725439	52725439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	198	456	0	ENST00000322088.6:c.1606G>A	p.Val536Ile	p.V536I	ENST00000322088	NM_014225.5	536	Gtc/Atc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99154420	99154420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	166	399	1	ENST00000074304.5:c.562G>A	p.Asp188Asn	p.D188N	ENST00000074304	NM_001134224.1	188	Gac/Aac																																																																															
SETD2	29072	MSKCC	GRCh37	3	47129733	47129733	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	117	244	0	ENST00000409792.3:c.5147A>G	p.Asp1716Gly	p.D1716G	ENST00000409792	NM_014159.6	1716	gAt/gGt																																																																															
STK19	8859	MSKCC	GRCh37	6	31947204	31947204	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	228	401	0	ENST00000375331.2:c.677G>T	p.Cys226Phe	p.C226F	ENST00000375331	NM_004197.1	226	tGt/tTt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468113	50468113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	162	403	0	ENST00000331340.3:c.1348C>A	p.Arg450Ser	p.R450S	ENST00000331340	NM_006060.4	450	Cgc/Agc																																																																															
MET	4233	MSKCC	GRCh37	7	116371752	116371753	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0050447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	178	295	0	ENST00000397752.3:c.1235_1236del	p.Arg412ProfsTer2	p.R412Pfs*2	ENST00000397752	NM_000245.2	411	GCg/g																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410433	63410433	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	192	513	0	ENST00000330258.3:c.2734G>T	p.Val912Phe	p.V912F	ENST00000330258	NM_152424.3	912	Gtc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	22	405	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0050449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	36	605	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426708	47426708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	26	639	2	ENST00000377045.4:c.953C>T	p.Thr318Met	p.T318M	ENST00000377045	NM_001654.4	318	aCg/aTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043381	180043381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	22	514	2	ENST00000261937.6:c.3205G>A	p.Val1069Ile	p.V1069I	ENST00000261937	NM_182925.4	1069	Gtc/Atc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138433354	138433354	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	10	444	1	ENST00000289153.2:c.1258A>G	p.Ile420Val	p.I420V	ENST00000289153	NM_006219.2	420	Att/Gtt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971040	21971041	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	31	467	0	ENST00000304494.5:c.317dup	p.Arg107AlafsTer13	p.R107Afs*13	ENST00000304494	NM_000077.4	106	gtg/gtTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	700	461	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0050455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	608	393	2	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0050455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	619	553	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141534	11141534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	432	556	0	ENST00000344626.4:c.3511G>A	p.Val1171Met	p.V1171M	ENST00000344626	NM_003072.3	1171	Gtg/Atg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038822	47038822	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	282	659	0	ENST00000329236.7:c.598C>T	p.Gln200Ter	p.Q200*	ENST00000329236	NM_001204466.1	200	Cag/Tag																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514445	103514445	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	73	285	0	ENST00000355739.4:c.946G>T	p.Gly316Cys	p.G316C	ENST00000355739	NM_000123.3	316	Ggc/Tgc																																																																															
PGR	5241	MSKCC	GRCh37	11	100999315	100999315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	471	725	0	ENST00000325455.5:c.487C>A	p.Pro163Thr	p.P163T	ENST00000325455	NM_001202474.3	163	Ccg/Acg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858573	57858573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	695	597	1	ENST00000228682.2:c.311G>A	p.Ser104Asn	p.S104N	ENST00000228682	NM_005269.2	104	aGc/aAc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17118382	17118382	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	427	547	0	ENST00000285071.4:c.1455G>C	p.Lys485Asn	p.K485N	ENST00000285071	NM_144997.5	485	aaG/aaC																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793212	33793212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	163	122	0	ENST00000498907.2:c.109G>T	p.Ala37Ser	p.A37S	ENST00000498907	NM_004364.3	37	Gcg/Tcg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458245	12458245	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	317	483	0	ENST00000287820.6:c.862G>T	p.Asp288Tyr	p.D288Y	ENST00000287820	NM_015869.4	288	Gat/Tat																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205840	128205840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	148	448	1	ENST00000341105.2:c.35C>T	p.Ala12Val	p.A12V	ENST00000341105	NM_032638.4	12	gCg/gTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187519261	187519261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	320	439	0	ENST00000441802.2:c.12122G>T	p.Ser4041Ile	p.S4041I	ENST00000441802	NM_005245.3	4041	aGt/aTt																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020787	26020787	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	183	320	0	ENST00000357647.3:c.70A>G	p.Lys24Glu	p.K24E	ENST00000357647	NM_003529.2	24	Aag/Gag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169230	32169230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	447	603	0	ENST00000375023.3:c.3803G>T	p.Cys1268Phe	p.C1268F	ENST00000375023	NM_004557.3	1268	tGt/tTt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93969162	93969162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	109	377	0	ENST00000369303.4:c.1834G>A	p.Glu612Lys	p.E612K	ENST00000369303	NM_004440.3	612	Gaa/Aaa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729865	41729865	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	172	482	0	ENST00000242208.4:c.664C>A	p.Pro222Thr	p.P222T	ENST00000242208	NM_002192.2	222	Cct/Act																																																																															
APC	324	MSKCC	GRCh37	5	112174438	112174438	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	27	247	0	ENST00000257430.4:c.3147G>A	p.Trp1049Ter	p.W1049*	ENST00000257430	NM_000038.5	1049	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	580	685	1	ENST00000269305.4:c.332T>A	p.Leu111Gln	p.L111Q	ENST00000269305	NM_001126112.2	111	cTg/cAg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570404	87570404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	157	753	1	ENST00000277120.3:c.2144G>A	p.Arg715Gln	p.R715Q	ENST00000277120		715	cGg/cAg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372007	55372007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1601	131	554	0	ENST00000297316.4:c.697G>A	p.Asp233Asn	p.D233N	ENST00000297316	NM_022454.3	233	Gac/Aac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2983995	2983995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	289	658	1	ENST00000396946.4:c.535C>T	p.Arg179Trp	p.R179W	ENST00000396946	NM_032415.4	179	Cgg/Tgg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609958	81609958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	71	419	0	ENST00000298171.2:c.1556G>A	p.Arg519His	p.R519H	ENST00000298171	NM_000369.2	519	cGc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70338650	70338650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	286	640	1	ENST00000374080.3:c.46C>T	p.Arg16Trp	p.R16W	ENST00000374080		16	Cgg/Tgg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178129262	178129262	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0050488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	239	378	0	ENST00000397062.3:c.43C>G	p.Gln15Glu	p.Q15E	ENST00000397062	NM_006164.4	15	Cag/Gag																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434174	12434174	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	67	460	0	ENST00000287820.6:c.542G>C	p.Arg181Pro	p.R181P	ENST00000287820	NM_015869.4	181	cGg/cCg																																																																															
APC	324	MSKCC	GRCh37	5	112174770	112174771	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	76	250	0	ENST00000257430.4:c.3482dup	p.Asn1161LysfsTer3	p.N1161Kfs*3	ENST00000257430	NM_000038.5	1160	aca/acAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0050491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	578	805	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0050491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	127	504	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982096	93982096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	217	545	2	ENST00000369303.4:c.1369C>T	p.Arg457Trp	p.R457W	ENST00000369303	NM_004440.3	457	Cgg/Tgg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44966768	44966768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	127	272	0	ENST00000377967.4:c.3992G>A	p.Cys1331Tyr	p.C1331Y	ENST00000377967	NM_021140.2	1331	tGt/tAt																																																																															
TP63	8626	MSKCC	GRCh37	3	189612188	189612188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	243	591	1	ENST00000264731.3:c.1940G>A	p.Arg647His	p.R647H	ENST00000264731	NM_003722.4	647	cGc/cAc																																																																															
ALK	238	MSKCC	GRCh37	2	29456430	29456430	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0050491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	180	607	0	ENST00000389048.3:c.2487+1G>T		p.X829_splice	ENST00000389048	NM_004304.4	829																																																																																
APC	324	MSKCC	GRCh37	5	112175884	112175885	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0050491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	89	284	0	ENST00000257430.4:c.4593_4594insTG	p.Asp1532TrpfsTer34	p.D1532Wfs*34	ENST00000257430	NM_000038.5	1531	-/TG																																																																															
ABL1	25	MSKCC	GRCh37	9	133730371	133730371	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	89	461	0	ENST00000318560.5:c.437A>G	p.Asn146Ser	p.N146S	ENST00000318560	NM_005157.4	146	aAt/aGt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118372393	118372393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	102	328	1	ENST00000534358.1:c.6326C>T	p.Ser2109Leu	p.S2109L	ENST00000534358	NM_005933.3	2109	tCa/tTa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16264098	16264098	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	358	685	0	ENST00000375759.3:c.10467C>G	p.His3489Gln	p.H3489Q	ENST00000375759	NM_015001.2	3489	caC/caG																																																																															
RET	5979	MSKCC	GRCh37	10	43595973	43595973	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	89	724	1	ENST00000355710.3:c.140G>T	p.Gly47Val	p.G47V	ENST00000355710	NM_020975.4	47	gGc/gTc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646805	23646806	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GATTTCTCTGTTTGATTTTGTTCTTTTAAGTTTTGGTTTTCATT			P-0050493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	140	498	0	ENST00000261584.4:c.1018_1061dup	p.Leu355MetfsTer6	p.L355Mfs*6	ENST00000261584	NM_024675.3	354	tct/tcAATGAAAACCAAAACTTAAAAGAACAAAATCAAACAGAGAAATCt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162954	38162954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	101	388	0	ENST00000317025.8:c.2252C>T	p.Pro751Leu	p.P751L	ENST00000317025	NM_023034.1	751	cCa/cTa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061192	38061192	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	72	497	0	ENST00000250448.2:c.797T>A	p.Phe266Tyr	p.F266Y	ENST00000250448	NM_004496.3	266	tTc/tAc																																																																															
CBFB	865	MSKCC	GRCh37	16	67063688	67063698	+	protein_altering_variant	In_Frame_Del	DEL	ACGCCTGCCGC	ACGCCTGCCGC	GA			P-0050494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	45	355	3	ENST00000412916.2:c.137_147delinsGA	p.Asn46_Cys48del	p.N46_C48del	ENST00000412916		46	aACGCCTGCCGC/aGA																																																																															
CDH1	999	MSKCC	GRCh37	16	68857460	68857460	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	76	542	0	ENST00000261769.5:c.2095C>T	p.Gln699Ter	p.Q699*	ENST00000261769	NM_004360.3	699	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	80	383	0	ENST00000263967.3:c.1637A>T	p.Gln546Leu	p.Q546L	ENST00000263967	NM_006218.2	546	cAg/cTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0050494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	58	314	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	67	404	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	117	612	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1023835002		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	129	558	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	282	714	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779211	3779211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783507		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	58	457	0	ENST00000262367.5:c.5837del	p.Pro1946HisfsTer30	p.P1946Hfs*30	ENST00000262367	NM_004380.2	1946	cCa/ca																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	78	414	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
ROS1	6098	MSKCC	GRCh37	6	117631413	117631413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	50	314	2	ENST00000368508.3:c.6265G>A	p.Val2089Met	p.V2089M	ENST00000368508	NM_002944.2	2089	Gtg/Atg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	66	362	5	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
CASP8	841	MSKCC	GRCh37	2	202149710	202149710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	145	566	1	ENST00000358485.4:c.1151G>A	p.Gly384Asp	p.G384D	ENST00000358485	NM_001080125.1	384	gGc/gAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134644679	134644679	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773064927		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	103	467	0	ENST00000398015.3:c.80C>T	p.Thr27Met	p.T27M	ENST00000398015	NM_004441.4	27	aCg/aTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	148	700	0	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	76	392	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	75	392	3	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	75	430	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	90	608	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
CASP8	841	MSKCC	GRCh37	2	202139625	202139626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	76	352	0	ENST00000358485.4:c.790dup	p.Val264GlyfsTer13	p.V264Gfs*13	ENST00000358485	NM_001080125.1	262	-/G																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	83	455	2	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	109	425	2	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868176	45868176	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140175332		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	173	831	3	ENST00000391945.4:c.514G>A	p.Ala172Thr	p.A172T	ENST00000391945	NM_000400.3	172	Gct/Act																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449779	149449779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	127	678	0	ENST00000286301.3:c.1285G>A	p.Val429Met	p.V429M	ENST00000286301	NM_005211.3	429	Gtg/Atg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	104	568	0	ENST00000245479.2:c.916delG	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	82	539	1	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	93	548	4	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016675	12016675	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	55	341	0	ENST00000353533.5:c.811G>A	p.Ala271Thr	p.A271T	ENST00000353533	NM_003010.3	271	Gca/Aca																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	80	506	3	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43730536	43730536	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	92	418	0	ENST00000382044.4:c.3177del	p.Thr1060ProfsTer36	p.T1060Pfs*36	ENST00000382044	NM_001141980.1	1059	ccC/cc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860842	151860842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	100	445	1	ENST00000262189.6:c.9820G>A	p.Ala3274Thr	p.A3274T	ENST00000262189	NM_170606.2	3274	Gca/Aca																																																																															
HGF	3082	MSKCC	GRCh37	7	81388044	81388045	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	42	389	1	ENST00000222390.5:c.330dup	p.Glu111ArgfsTer5	p.E111Rfs*5	ENST00000222390	NM_000601.4	110	-/A																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783668	50783668	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	70	492	0	ENST00000398568.2:c.64del	p.Tyr22ThrfsTer25	p.Y22Tfs*25	ENST00000398568	NM_001042412.1	20	aTt/at																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738808	145738808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	116	1028	0	ENST00000428558.2:c.2257C>T	p.Arg753Trp	p.R753W	ENST00000428558	NM_004260.3	753	Cgg/Tgg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162916	38162916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	98	527	1	ENST00000317025.8:c.2290C>T	p.Arg764Cys	p.R764C	ENST00000317025	NM_023034.1	764	Cgt/Tgt																																																																															
EP300	2033	MSKCC	GRCh37	22	41523642	41523642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	164	579	0	ENST00000263253.7:c.1058G>A	p.Arg353His	p.R353H	ENST00000263253	NM_001429.3	353	cGc/cAc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324139	31324139	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	75	643	0	ENST00000412585.2:c.424T>C	p.Tyr142His	p.Y142H	ENST00000412585	NM_005514.6	142	Tac/Cac																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247355	71247355	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	119	548	1	ENST00000318789.4:c.178C>T	p.Gln60Ter	p.Q60*	ENST00000318789	NM_032682.5	60	Cag/Tag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229375	36229375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	107	616	0	ENST00000222270.7:c.8065G>A	p.Asp2689Asn	p.D2689N	ENST00000222270	NM_014727.1	2689	Gac/Aac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932791	39932791	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	160	710	0	ENST00000378444.4:c.1808C>G	p.Ala603Gly	p.A603G	ENST00000378444	NM_001123385.1	603	gCc/gGc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991664	72991664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	90	495	0	ENST00000268489.5:c.2381C>T	p.Ser794Leu	p.S794L	ENST00000268489	NM_006885.3	794	tCg/tTg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430666	181430666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	138	761	0	ENST00000325404.1:c.518T>C	p.Met173Thr	p.M173T	ENST00000325404	NM_003106.3	173	aTg/aCg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023607	27023613	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCGGG	CTCCGGG	-			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	104	435	0	ENST00000324856.7:c.719_725del	p.Gly240AlafsTer121	p.G240Afs*121	ENST00000324856	NM_006015.4	238	aCTCCGGGc/ac																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612800	228612800	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	138	727	0	ENST00000366696.1:c.227C>A	p.Ala76Asp	p.A76D	ENST00000366696	NM_003493.2	76	gCt/gAt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246197	46246197	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	91	362	0	ENST00000334344.6:c.4291A>G	p.Ile1431Val	p.I1431V	ENST00000334344	NM_152641.2	1431	Ata/Gta																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424448	49424449	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	130	737	0	ENST00000301067.7:c.13774_13775insT	p.Arg4592MetfsTer14	p.R4592Mfs*14	ENST00000301067	NM_003482.3	4592	agg/aTgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433772	49433772	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	170	947	0	ENST00000301067.7:c.7781T>C	p.Leu2594Pro	p.L2594P	ENST00000301067	NM_003482.3	2594	cTg/cCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447286	49447286	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	131	633	0	ENST00000301067.7:c.812del	p.Pro271LeufsTer33	p.P271Lfs*33	ENST00000301067	NM_003482.3	271	cCt/ct																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061168	38061168	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	114	397	0	ENST00000250448.2:c.821C>G	p.Ala274Gly	p.A274G	ENST00000250448	NM_004496.3	274	gCc/gGc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95579439	95579439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	44	294	0	ENST00000343455.3:c.2030C>T	p.Ala677Val	p.A677V	ENST00000343455	NM_177438.2	677	gCc/gTc																																																																															
AKT1	207	MSKCC	GRCh37	14	105237115	105237115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	129	562	0	ENST00000349310.3:c.1330G>A	p.Ala444Thr	p.A444T	ENST00000349310	NM_001014432.1	444	Gcc/Acc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15978884	15978884	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	148	498	0	ENST00000268712.3:c.3634T>C	p.Tyr1212His	p.Y1212H	ENST00000268712	NM_006311.3	1212	Tat/Cat																																																																															
INSR	3643	MSKCC	GRCh37	19	7163055	7163055	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	102	494	0	ENST00000302850.5:c.2017T>C	p.Tyr673His	p.Y673H	ENST00000302850	NM_000208.2	673	Tat/Cat																																																																															
CARM1	10498	MSKCC	GRCh37	19	11032387	11032387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	124	820	2	ENST00000327064.4:c.1781C>T	p.Ala594Val	p.A594V	ENST00000327064	NM_199141.1	594	gCg/gTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11169467	11169467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	134	628	0	ENST00000344626.4:c.4537C>T	p.Arg1513Cys	p.R1513C	ENST00000344626	NM_003072.3	1513	Cgc/Tgc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256806	19256806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	136	739	1	ENST00000162023.5:c.907G>A	p.Gly303Ser	p.G303S	ENST00000162023		303	Ggt/Agt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41818293	41818293	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	26	66	0	ENST00000373198.4:c.81C>A	p.Ser27Arg	p.S27R	ENST00000373198	NM_133170.3	27	agC/agA																																																																															
RYBP	23429	MSKCC	GRCh37	3	72428465	72428497	+	inframe_deletion	In_Frame_Del	DEL	TTCTCTTTGTCCTGCTTTTCAACTTTCTCCTTC	TTCTCTTTGTCCTGCTTTTCAACTTTCTCCTTC	-			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	71	431	0	ENST00000477973.2:c.505_537del	p.Lys170_Lys180del	p.K170_K180del	ENST00000477973	NM_012234.5	169	aaGAAGGAGAAAGTTGAAAAGCAGGACAAAGAGAAa/aaa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957534	1957534	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	165	702	1	ENST00000382891.5:c.2633T>C	p.Leu878Pro	p.L878P	ENST00000382891	NM_133335.3	878	cTg/cCg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361231	66361232	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	48	330	0	ENST00000273854.3:c.940_941delinsAT	p.Pro314Ile	p.P314I	ENST00000273854	NM_004439.5	314	CCt/ATt																																																																															
TET2	54790	MSKCC	GRCh37	4	106196366	106196366	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	55	374	0	ENST00000380013.4:c.4699A>G	p.Asn1567Asp	p.N1567D	ENST00000380013	NM_001127208.2	1567	Aat/Gat																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38972017	38972017	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	33	313	0	ENST00000357387.3:c.934C>A	p.Leu312Ile	p.L312I	ENST00000357387	NM_152756.3	312	Cta/Ata																																																																															
SMO	6608	MSKCC	GRCh37	7	128852185	128852185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	156	805	1	ENST00000249373.3:c.2257C>T	p.Pro753Ser	p.P753S	ENST00000249373	NM_005631.4	753	Ccg/Tcg																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127916205	127916206	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	85	466	0	ENST00000373547.4:c.438dup	p.Asp147Ter	p.D147*	ENST00000373547	NM_002721.4	146	-/T																																																																															
MED12	9968	MSKCC	GRCh37	X	70356386	70356386	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	81	597	1	ENST00000374080.3:c.5285del	p.Lys1762ArgfsTer53	p.K1762Rfs*53	ENST00000374080		1761	Aaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0050511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	131	615	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0050511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	35	302	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0050511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	115	484	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631102	69631102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121917704		P-0050511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	136	620	0	ENST00000334134.2:c.310C>T	p.Arg104Ter	p.R104*	ENST00000334134	NM_005247.2	104	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023842	27023842	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0050511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	88	416	0	ENST00000324856.7:c.948C>G	p.Tyr316Ter	p.Y316*	ENST00000324856	NM_006015.4	316	taC/taG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	23	374	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0050514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	182	602	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879628	37879628	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1572	244	724	0	ENST00000269571.5:c.2003G>C	p.Gly668Ala	p.G668A	ENST00000269571		668	gGg/gCg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573556	48573556	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	17	250	0	ENST00000342988.3:c.140T>G	p.Leu47Arg	p.L47R	ENST00000342988	NM_005359.5	47	cTg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	175	395	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0050517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	110	319	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0050517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	270	576	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604787	48604787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	153	414	0	ENST00000342988.3:c.1609G>T	p.Asp537Tyr	p.D537Y	ENST00000342988	NM_005359.5	537	Gac/Tac																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	615	695	2	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
TP63	8626	MSKCC	GRCh37	3	189584501	189584501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	123	357	0	ENST00000264731.3:c.797G>A	p.Arg266Gln	p.R266Q	ENST00000264731	NM_003722.4	266	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112176020	112176020	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	110	262	0	ENST00000257430.4:c.4729G>T	p.Glu1577Ter	p.E1577*	ENST00000257430	NM_000038.5	1577	Gaa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420273	49420273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	269	649	0	ENST00000301067.7:c.15476G>A	p.Arg5159Gln	p.R5159Q	ENST00000301067	NM_003482.3	5159	cGg/cAg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111886044	111886044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	233	604	1	ENST00000341259.2:c.1666G>A	p.Glu556Lys	p.E556K	ENST00000341259	NM_005475.2	556	Gaa/Aaa																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2491276	2491276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	328	824	0	ENST00000355716.4:c.319G>A	p.Ala107Thr	p.A107T	ENST00000355716	NM_003820.2	107	Gcg/Acg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0050518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	52	478	0	ENST00000269305.4:c.673-1G>C		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37883611	37883611	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	53	852	0	ENST00000269571.5:c.3223C>G	p.Leu1075Val	p.L1075V	ENST00000269571		1075	Ctg/Gtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0050518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	34	568	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188183	11188183	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0050521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	127	395	0	ENST00000361445.4:c.5911G>C	p.Ala1971Pro	p.A1971P	ENST00000361445	NM_004958.3	1971	Gcc/Ccc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259207	16259207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	140	486	0	ENST00000375759.3:c.6472C>T	p.Pro2158Ser	p.P2158S	ENST00000375759	NM_015001.2	2158	Ccg/Tcg																																																																															
ATM	472	MSKCC	GRCh37	11	108200965	108200965	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	228	351	0	ENST00000278616.4:c.7332G>T	p.Glu2444Asp	p.E2444D	ENST00000278616	NM_000051.3	2444	gaG/gaT																																																																															
ATM	472	MSKCC	GRCh37	11	108200991	108200991	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	110	381	0	ENST00000278616.4:c.7358G>C	p.Arg2453Pro	p.R2453P	ENST00000278616	NM_000051.3	2453	cGt/cCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0050521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	256	397	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
FLT3	2322	MSKCC	GRCh37	13	28644704	28644704	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	109	415	0	ENST00000241453.7:c.89T>A	p.Leu30Gln	p.L30Q	ENST00000241453	NM_004119.2	30	cTg/cAg																																																																															
MGA	23269	MSKCC	GRCh37	15	42042400	42042400	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	296	483	0	ENST00000219905.7:c.6595G>T	p.Glu2199Ter	p.E2199*	ENST00000219905	NM_001164273.1	2199	Gag/Tag																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39542529	39542529	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	88	365	0	ENST00000262039.4:c.333G>T	p.Trp111Cys	p.W111C	ENST00000262039	NM_002647.2	111	tgG/tgT																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619130	1619130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	165	668	0	ENST00000344749.5:c.1430G>T	p.Arg477Leu	p.R477L	ENST00000344749	NM_001136139.2	477	cGg/cTg																																																																															
REL	5966	MSKCC	GRCh37	2	61118960	61118960	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0050521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	222	320	0	ENST00000295025.8:c.153G>T	p.Gln51His	p.Q51H	ENST00000295025	NM_002908.2	51	caG/caT																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265244	46265244	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	212	318	0	ENST00000371998.3:c.2114C>G	p.Ala705Gly	p.A705G	ENST00000371998		705	gCc/gGc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928002	49928002	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	352	589	0	ENST00000296474.3:c.3726A>T	p.Gln1242His	p.Q1242H	ENST00000296474	NM_002447.2	1242	caA/caT																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664514	138664514	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	246	356	0	ENST00000330315.3:c.1051C>G	p.Pro351Ala	p.P351A	ENST00000330315	NM_023067.3	351	Ccc/Gcc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66233143	66233143	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0050521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	245	360	0	ENST00000273854.3:c.1857-1G>T		p.X619_splice	ENST00000273854	NM_004439.5	619																																																																																
FAT1	2195	MSKCC	GRCh37	4	187524519	187524519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	149	449	0	ENST00000441802.2:c.11161G>A	p.Asp3721Asn	p.D3721N	ENST00000441802	NM_005245.3	3721	Gac/Aac																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950030	38950030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	90	369	0	ENST00000357387.3:c.3920C>T	p.Ser1307Phe	p.S1307F	ENST00000357387	NM_152756.3	1307	tCt/tTt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950351	38950351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	230	348	0	ENST00000357387.3:c.3599G>A	p.Arg1200Gln	p.R1200Q	ENST00000357387	NM_152756.3	1200	cGa/cAa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190351	32190351	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	379	619	0	ENST00000375023.3:c.388A>T	p.Arg130Trp	p.R130W	ENST00000375023	NM_004557.3	130	Agg/Tgg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044540	47044540	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	TT			P-0050521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	333	366	0	ENST00000329236.7:c.1803delinsTT	p.Arg602SerfsTer3	p.R602Sfs*3	ENST00000329236	NM_001204466.1	601	ctG/ctTT																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0050522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	121	347	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0050522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	219	596	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004721	150004721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	132	422	0	ENST00000253339.5:c.1504C>T	p.Arg502Cys	p.R502C	ENST00000253339		502	Cgt/Tgt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354431	354431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	96	585	0	ENST00000262320.3:c.1127G>A	p.Arg376Gln	p.R376Q	ENST00000262320	NM_003502.3	376	cGg/cAg																																																																															
ATR	545	MSKCC	GRCh37	3	142172007	142172007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	100	428	2	ENST00000350721.4:c.7724C>T	p.Ala2575Val	p.A2575V	ENST00000350721	NM_001184.3	2575	gCg/gTg																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023327	33023336	+	frameshift_variant	Frame_Shift_Del	DEL	CCCAAGAAAT	CCCAAGAAAT	-			P-0050522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	115	558	0	ENST00000300177.4:c.436_445del	p.Pro146SerfsTer4	p.P146Sfs*4	ENST00000300177	NM_001191322.1	146	CCCAAGAAATtc/tc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437567	56437568	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAGTTACGATGGGTGG			P-0050522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	115	463	0	ENST00000407977.2:c.894_895insCCACCCATCGTAACTGT	p.Val299ProfsTer126	p.V299Pfs*126	ENST00000407977		298	-/CCACCCATCGTAACTGT																																																																															
BARD1	580	MSKCC	GRCh37	2	215646206	215646206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	77	283	0	ENST00000260947.4:c.392G>A	p.Ser131Asn	p.S131N	ENST00000260947	NM_000465.2	131	aGt/aAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42796834	42796834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	207	766	1	ENST00000575354.2:c.3292G>A	p.Gly1098Ser	p.G1098S	ENST00000575354	NM_015125.3	1098	Ggc/Agc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868076	56868076	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141371158		P-0050528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	53	495	0	ENST00000308159.5:c.1574G>A	p.Arg525Gln	p.R525Q	ENST00000308159	NM_014669.4	525	cGg/cAg																																																																															
TERT	7015	MSKCC	GRCh37	5	1293898	1293898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1303	82	924	0	ENST00000310581.5:c.1103C>T	p.Ser368Phe	p.S368F	ENST00000310581	NM_198253.2	368	tCc/tTc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50816307	50816307	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	37	341	0	ENST00000398568.2:c.1747A>G	p.Ile583Val	p.I583V	ENST00000398568	NM_001042412.1	583	Ata/Gta																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125680	47125680	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	39	366	0	ENST00000409792.3:c.5590C>G	p.Leu1864Val	p.L1864V	ENST00000409792	NM_014159.6	1864	Ctg/Gtg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149498404	149498404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	85	585	0	ENST00000261799.4:c.2810T>C	p.Met937Thr	p.M937T	ENST00000261799	NM_002609.3	937	aTg/aCg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056455	26056455	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	51	357	0	ENST00000343677.2:c.202G>T	p.Ala68Ser	p.A68S	ENST00000343677	NM_005319.3	68	Gcc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0050533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	26	327	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579486	7579486	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	79	772	0	ENST00000269305.4:c.201del	p.Glu68ArgfsTer55	p.E68Rfs*55	ENST00000269305	NM_001126112.2	67	ccA/cc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686345	30686346	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0050533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	41	406	0	ENST00000359013.4:c.277_278dup	p.Met93IlefsTer2	p.M93Ifs*2	ENST00000359013	NM_001024847.2	92	-/AT																																																																															
PGR	5241	MSKCC	GRCh37	11	100999449	100999450	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0050535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	269	725	0	ENST00000325455.5:c.352_353delCT	p.Leu118ValfsTer65	p.L118Vfs*65	ENST00000325455	NM_001202474.3	118	CTg/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7577070	7577070	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	AT			P-0050535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	568	553	0	ENST00000269305.4:c.868delinsAT	p.Arg290MetfsTer16	p.R290Mfs*16	ENST00000269305	NM_001126112.2	290	Cgc/ATgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306583	41306583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	99	527	1	ENST00000373198.4:c.1076G>A	p.Arg359Gln	p.R359Q	ENST00000373198	NM_133170.3	359	cGa/cAa																																																																															
ATR	545	MSKCC	GRCh37	3	142224086	142224086	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	97	362	0	ENST00000350721.4:c.5091G>C	p.Lys1697Asn	p.K1697N	ENST00000350721	NM_001184.3	1697	aaG/aaC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541338	187541338	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	44	326	0	ENST00000441802.2:c.6402A>T	p.Glu2134Asp	p.E2134D	ENST00000441802	NM_005245.3	2134	gaA/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0050540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	261	564	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060846	38060864	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGCCAAGCCGTGTGCC	GGGTGCCAAGCCGTGTGCC	-			P-0050540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	328	671	1	ENST00000250448.2:c.1125_1143del	p.Ala376ThrfsTer7	p.A376Tfs*7	ENST00000250448	NM_004496.3	375	ccGGCACACGGCTTGGCACCC/cc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78935274	78935274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	106	621	1	ENST00000306801.3:c.3686G>A	p.Ser1229Asn	p.S1229N	ENST00000306801	NM_020761.2	1229	aGt/aAt																																																																															
IL10	3586	MSKCC	GRCh37	1	206944257	206944257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	35	336	0	ENST00000423557.1:c.373C>T	p.Arg125Cys	p.R125C	ENST00000423557	NM_000572.2	125	Cgc/Tgc																																																																															
MYC	4609	MSKCC	GRCh37	8	128752989	128752989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	78	393	1	ENST00000377970.2:c.1150G>A	p.Glu384Lys	p.E384K	ENST00000377970	NM_002467.4	384	Gag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11113761	11113761	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	59	558	0	ENST00000344626.4:c.1869G>C	p.Glu623Asp	p.E623D	ENST00000344626	NM_003072.3	623	gaG/gaC																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178236	56178236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	29	288	0	ENST00000399503.3:c.3209C>A	p.Thr1070Lys	p.T1070K	ENST00000399503	NM_005921.1	1070	aCa/aAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023405	27023405	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	109	416	1	ENST00000324856.7:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000324856	NM_006015.4	171	Caa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0050546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	63	308	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0050546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	76	277	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56176992	56176993	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0050546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	80	288	0	ENST00000399503.3:c.2263_2264del	p.Leu755TrpfsTer8	p.L755Wfs*8	ENST00000399503	NM_005921.1	754	ctTCtt/cttt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178461	56178461	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	69	300	0	ENST00000399503.3:c.3434del	p.Thr1145LysfsTer3	p.T1145Kfs*3	ENST00000399503	NM_005921.1	1145	aCa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0050548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	204	621	0	ENST00000269305.4:c.993+2T>G		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
FAT1	2195	MSKCC	GRCh37	4	187539210	187539210	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	134	423	0	ENST00000441802.2:c.8530G>C	p.Val2844Leu	p.V2844L	ENST00000441802	NM_005245.3	2844	Gtt/Ctt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0050565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	529	781	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28609710	28609710	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs202109868		P-0050565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	465	836	0	ENST00000241453.7:c.1519A>G	p.Ile507Val	p.I507V	ENST00000241453	NM_004119.2	507	Ata/Gta																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789696	3789696	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	188	615	0	ENST00000262367.5:c.4163C>G	p.Ser1388Cys	p.S1388C	ENST00000262367	NM_004380.2	1388	tCt/tGt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205277	38205277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	3810	1112	4	ENST00000317025.8:c.413C>T	p.Ser138Leu	p.S138L	ENST00000317025	NM_023034.1	138	tCg/tTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939531	71939531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	303	884	0	ENST00000298229.2:c.386G>A	p.Arg129Gln	p.R129Q	ENST00000298229	NM_001567.3	129	cGg/cAg																																																																															
CBL	867	MSKCC	GRCh37	11	119148635	119148915	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTCATTGGAACCCATTGACTAGATTAGTGAATTTGTGTGTATGTGGTTTCACTTTAAACCCTGGAGCTTAAAATAGGACCCAGACTAGATGCTTTCTGGTTTAATAAAAAATAAACCACTGTTGTGACATTTTTATATAAGCAAAATTTGTATAGGAAACAAGTCTTCACTTTTTCTGTTAACATTTATAATTGCAGTTATTTATTCAACTAATAGTCTTTTAATTTTTTTTAATCAAAGGAACAATATGAATTATACTGTGAGATGGGCTCCACATTCC	ATTCATTGGAACCCATTGACTAGATTAGTGAATTTGTGTGTATGTGGTTTCACTTTAAACCCTGGAGCTTAAAATAGGACCCAGACTAGATGCTTTCTGGTTTAATAAAAAATAAACCACTGTTGTGACATTTTTATATAAGCAAAATTTGTATAGGAAACAAGTCTTCACTTTTTCTGTTAACATTTATAATTGCAGTTATTTATTCAACTAATAGTCTTTTAATTTTTTTTAATCAAAGGAACAATATGAATTATACTGTGAGATGGGCTCCACATTCC	-			P-0050565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	44	155	0	ENST00000264033.4:c.1095+82_1136del		p.X365_splice	ENST00000264033	NM_005188.3	365																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3788659	3788659	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	173	534	1	ENST00000262367.5:c.4295C>G	p.Ser1432Cys	p.S1432C	ENST00000262367	NM_004380.2	1432	tCt/tGt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789702	3789702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	183	592	0	ENST00000262367.5:c.4157C>T	p.Ser1386Phe	p.S1386F	ENST00000262367	NM_004380.2	1386	tCt/tTt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155275	185155275	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	720	569	0	ENST00000265026.3:c.516G>T	p.Gln172His	p.Q172H	ENST00000265026	NM_004721.4	172	caG/caT																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800534	32800534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	391	915	2	ENST00000374899.4:c.1013G>T	p.Gly338Val	p.G338V	ENST00000374899	NM_018833.2	338	gGg/gTg																																																																															
CDK6	1021	MSKCC	GRCh37	7	92244563	92244563	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	124	496	0	ENST00000265734.4:c.872C>G	p.Ala291Gly	p.A291G	ENST00000265734	NM_001259.6	291	gCc/gGc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275885	38275885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2530	362	629	1	ENST00000425967.3:c.1384G>T	p.Ala462Ser	p.A462S	ENST00000425967	NM_001174067.1	462	Gct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0035624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			158	281	701	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			261	636	496	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106862	27106863	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			158	429	706	0	ENST00000324856.7:c.6476dup	p.Asn2160GlufsTer65	p.N2160Efs*65	ENST00000324856	NM_006015.4	2158	cga/cgAa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416920	416920	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			402	106	499	0	ENST00000399788.2:c.3630C>G	p.Phe1210Leu	p.F1210L	ENST00000399788	NM_001042603.1	1210	ttC/ttG																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562882	176562882	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	131	537	0	ENST00000439151.2:c.778C>G	p.Leu260Val	p.L260V	ENST00000439151	NM_022455.4	260	Cta/Gta																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0048333-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			324	92	334	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931588		P-0048333-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	88	321	0	ENST00000349496.5:c.94G>A	p.Asp32Asn	p.D32N	ENST00000349496	NM_001904.3	32	Gac/Aac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048333-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	157	401	0	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539018	187539018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048333-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	151	432	1	ENST00000441802.2:c.8722G>A	p.Val2908Ile	p.V2908I	ENST00000441802	NM_005245.3	2908	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0049301-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			573	135	567	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876366	35876366	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049301-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			710	133	594	0	ENST00000303115.3:c.1158G>T	p.Arg386Ser	p.R386S	ENST00000303115	NM_002185.3	386	agG/agT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0049301-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			415	181	424	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31409357	31409357	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0049301-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			545	56	428	0	ENST00000344624.3:c.3750A>T	p.Lys1250Asn	p.K1250N	ENST00000344624		1250	aaA/aaT																																																																															
TCF3	6929	MSKCC	GRCh37	19	1632106	1632106	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138963927		P-0049301-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			662	46	721	0	ENST00000344749.5:c.229G>A	p.Glu77Lys	p.E77K	ENST00000344749	NM_001136139.2	77	Gag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152237	11152237	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049301-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			381	100	407	0	ENST00000344626.4:c.4424+1G>A		p.X1475_splice	ENST00000344626	NM_003072.3	1475																																																																																
POLE	5426	MSKCC	GRCh37	12	133210953	133210953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049301-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			573	43	508	0	ENST00000320574.5:c.5823G>C	p.Gln1941His	p.Q1941H	ENST00000320574	NM_006231.2	1941	caG/caC																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106110	27106110	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049301-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			660	23	0	0	ENST00000324856.7:c.5721C>G	p.Ile1907Met	p.I1907M	ENST00000324856	NM_006015.4	1907	atC/atG																																																																															
NF1	4763	MSKCC	GRCh37	17	29654814	29654814	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049301-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			352	51	327	0	ENST00000358273.4:c.5566A>G	p.Asn1856Asp	p.N1856D	ENST00000358273	NM_001042492.2	1856	Aat/Gat																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87636341	87636341	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049301-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			649	74	582	0	ENST00000277120.3:c.2506A>T	p.Ile836Phe	p.I836F	ENST00000277120		836	Att/Ttt																																																																															
ATM	472	MSKCC	GRCh37	11	108216486	108216486	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049301-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			257	17	223	0	ENST00000278616.4:c.8435C>G	p.Ser2812Cys	p.S2812C	ENST00000278616	NM_000051.3	2812	tCt/tGt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56493448	56493448	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049301-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			503	34	432	0	ENST00000267101.3:c.2856G>C	p.Glu952Asp	p.E952D	ENST00000267101	NM_001982.3	952	gaG/gaC																																																																															
MDM2	4193	MSKCC	GRCh37	12	69203064	69203064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049301-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	32	400	1	ENST00000462284.1:c.91G>A	p.Glu31Lys	p.E31K	ENST00000462284	NM_002392.5	31	Gag/Aag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467215	99467215	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049301-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	85	392	0	ENST00000268035.6:c.2596G>C	p.Glu866Gln	p.E866Q	ENST00000268035	NM_000875.3	866	Gaa/Caa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076922	41076922	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049301-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			664	58	510	2	ENST00000373198.4:c.1498G>T	p.Glu500Ter	p.E500*	ENST00000373198	NM_133170.3	500	Gag/Tag																																																																															
ATR	545	MSKCC	GRCh37	3	142261573	142261573	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049301-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			327	44	274	0	ENST00000350721.4:c.3384G>T	p.Leu1128Phe	p.L1128F	ENST00000350721	NM_001184.3	1128	ttG/ttT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460500	8460500	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049301-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			443	72	463	2	ENST00000356435.5:c.3786T>A	p.Asp1262Glu	p.D1262E	ENST00000356435		1262	gaT/gaA																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317516	1317516	+	downstream_gene_variant	3'Flank	SNP	G	G	C			P-0049301-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			603	34	380	0				ENST00000381566																																																																																		
KDM5C	8242	MSKCC	GRCh37	X	53222959	53222959	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049301-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			348	53	325	0	ENST00000375401.3:c.4113G>C	p.Lys1371Asn	p.K1371N	ENST00000375401	NM_004187.3	1371	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	173	687	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																															
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			498	124	934	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974677	21974677	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1057519882		P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	105	689	0	ENST00000304494.5:c.150G>T	p.Gln50His	p.Q50H	ENST00000304494	NM_000077.4	50	caG/caT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528612	8528612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			185	52	479	0	ENST00000356435.5:c.520C>T	p.Arg174Cys	p.R174C	ENST00000356435		174	Cgt/Tgt																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427690	72427690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	83	438	1	ENST00000477973.2:c.798G>T	p.Arg267Leu	p.R267L	ENST00000477973	NM_012234.5	267	cGc/cTc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94219187	94219187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			253	58	512	0	ENST00000323929.3:c.217C>T	p.His73Tyr	p.H73Y	ENST00000323929	NM_005591.3	73	Cat/Tat																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311604	15311605	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			162	61	311	0	ENST00000263388.2:c.112dup	p.Ala38GlyfsTer37	p.A38Gfs*37	ENST00000263388	NM_000435.2	38	gct/gGct																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435493	110435493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	61	739	0	ENST00000375856.3:c.2908C>T	p.Arg970Trp	p.R970W	ENST00000375856	NM_003749.2	970	Cgg/Tgg																																																																															
MGA	23269	MSKCC	GRCh37	15	42046674	42046674	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			267	77	499	0	ENST00000219905.7:c.7048G>T	p.Val2350Leu	p.V2350L	ENST00000219905	NM_001164273.1	2350	Gtg/Ttg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248708	212248708	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	50	445	0	ENST00000342788.4:c.3559G>T	p.Glu1187Ter	p.E1187*	ENST00000342788	NM_005235.2	1187	Gaa/Taa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420273	88420273	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			481	70	542	0	ENST00000360948.2:c.2413G>T	p.Gly805Trp	p.G805W	ENST00000360948	NM_001012338.2	805	Ggg/Tgg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448542	89448542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	51	491	0	ENST00000336596.2:c.1506C>A	p.Asp502Glu	p.D502E	ENST00000336596	NM_005233.5	502	gaC/gaA																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727424	66727424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	95	478	0	ENST00000307102.5:c.140G>T	p.Arg47Leu	p.R47L	ENST00000307102	NM_002755.3	47	cGa/cTa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483921	88483921	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			606	81	753	0	ENST00000360948.2:c.1649del	p.Gly550GlufsTer22	p.G550Efs*22	ENST00000360948	NM_001012338.2	550	gGa/ga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251954	153251954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			223	22	511	0	ENST00000281708.4:c.1052G>T	p.Trp351Leu	p.W351L	ENST00000281708	NM_033632.3	351	tGg/tTg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176153781	176153781	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			200	35	443	0	ENST00000367669.3:c.455G>C	p.Gly152Ala	p.G152A	ENST00000367669	NM_022457.5	152	gGc/gCc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206661275	206661275	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			473	46	790	0	ENST00000367120.3:c.1641G>T	p.Leu547Phe	p.L547F	ENST00000367120	NM_014002.3	547	ttG/ttT																																																																															
RET	5979	MSKCC	GRCh37	10	43601894	43601894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			635	74	890	3	ENST00000355710.3:c.938G>T	p.Arg313Leu	p.R313L	ENST00000355710	NM_020975.4	313	cGg/cTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70412331	70412331	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			215	57	339	0	ENST00000373644.4:c.4441G>C	p.Gly1481Arg	p.G1481R	ENST00000373644	NM_030625.2	1481	Ggg/Cgg																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724594	112724594	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			399	35	562	0	ENST00000369452.4:c.478A>T	p.Ser160Cys	p.S160C	ENST00000369452	NM_007373.3	160	Agt/Tgt																																																																															
CCND2	894	MSKCC	GRCh37	12	4388030	4388030	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	134	537	0	ENST00000261254.3:c.516G>T	p.Glu172Asp	p.E172D	ENST00000261254	NM_001759.3	172	gaG/gaT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445113	49445113	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			545	30	806	0	ENST00000301067.7:c.2353G>C	p.Glu785Gln	p.E785Q	ENST00000301067	NM_003482.3	785	Gag/Cag																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877366	28877366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	53	587	0	ENST00000282397.4:c.3955G>C	p.Ala1319Pro	p.A1319P	ENST00000282397	NM_002019.4	1319	Gcg/Ccg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29002026	29002026	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			229	34	393	0	ENST00000282397.4:c.1139C>A	p.Ser380Tyr	p.S380Y	ENST00000282397	NM_002019.4	380	tCt/tAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892276	9892276	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			300	33	539	0	ENST00000330684.3:c.2214G>T	p.Lys738Asn	p.K738N	ENST00000330684	NM_001134407.1	738	aaG/aaT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993712	72993712	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			412	54	793	0	ENST00000268489.5:c.333G>C	p.Glu111Asp	p.E111D	ENST00000268489	NM_006885.3	111	gaG/gaC																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7976226	7976226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	81	760	0	ENST00000319144.4:c.1969G>T	p.Ala657Ser	p.A657S	ENST00000319144	NM_001139.2	657	Gcc/Tcc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59876593	59876593	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			245	51	510	0	ENST00000259008.2:c.1208G>C	p.Arg403Pro	p.R403P	ENST00000259008	NM_032043.2	403	cGg/cCg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59885991	59885991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	51	581	0	ENST00000259008.2:c.755C>T	p.Thr252Ile	p.T252I	ENST00000259008	NM_032043.2	252	aCa/aTa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353835	15353835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			222	55	377	0	ENST00000263377.2:c.3045G>T	p.Gln1015His	p.Q1015H	ENST00000263377	NM_058243.2	1015	caG/caT																																																																															
CIC	23152	MSKCC	GRCh37	19	42796531	42796531	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			721	129	1131	1	ENST00000575354.2:c.3088A>T	p.Thr1030Ser	p.T1030S	ENST00000575354	NM_015125.3	1030	Acc/Tcc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25497913	25497913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			510	58	845	0	ENST00000264709.3:c.536G>A	p.Ser179Asn	p.S179N	ENST00000264709	NM_175629.2	179	aGc/aAc																																																																															
ALK	238	MSKCC	GRCh37	2	29754868	29754868	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			355	82	601	0	ENST00000389048.3:c.1067A>T	p.Gln356Leu	p.Q356L	ENST00000389048	NM_004304.4	356	cAg/cTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248555	212248555	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			464	36	625	0	ENST00000342788.4:c.3712G>T	p.Asp1238Tyr	p.D1238Y	ENST00000342788	NM_005235.2	1238	Gac/Tac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251686	212251686	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	44	485	0	ENST00000342788.4:c.3373A>T	p.Thr1125Ser	p.T1125S	ENST00000342788	NM_005235.2	1125	Acc/Tcc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295744	212295744	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			298	81	587	1	ENST00000342788.4:c.2569G>T	p.Val857Leu	p.V857L	ENST00000342788	NM_005235.2	857	Gtg/Ttg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989504	212989504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			300	68	394	0	ENST00000342788.4:c.207G>T	p.Glu69Asp	p.E69D	ENST00000342788	NM_005235.2	69	gaG/gaT																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561440	9561440	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	32	550	0	ENST00000353224.5:c.342C>A	p.Ser114Arg	p.S114R	ENST00000353224	NM_177990.2	114	agC/agA																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748598	40748598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			331	70	450	0	ENST00000373198.4:c.2918C>T	p.Pro973Leu	p.P973L	ENST00000373198	NM_133170.3	973	cCt/cTt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46276031	46276031	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			442	85	557	0	ENST00000371998.3:c.3467G>T	p.Arg1156Leu	p.R1156L	ENST00000371998		1156	cGa/cTa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713909	30713909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	64	597	0	ENST00000359013.4:c.1309G>T	p.Asp437Tyr	p.D437Y	ENST00000359013	NM_001024847.2	437	Gac/Tac																																																																															
MITF	4286	MSKCC	GRCh37	3	69998201	69998201	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			314	64	396	0	ENST00000352241.4:c.763-1G>C		p.X255_splice	ENST00000352241	NM_198159.2	255																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134851562	134851562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	58	554	0	ENST00000398015.3:c.968C>G	p.Pro323Arg	p.P323R	ENST00000398015	NM_004441.4	323	cCa/cGa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133615	55133615	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	46	488	0	ENST00000257290.5:c.919A>G	p.Ile307Val	p.I307V	ENST00000257290	NM_006206.4	307	Att/Gtt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156535	55156535	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			403	60	653	1	ENST00000257290.5:c.2936G>T	p.Arg979Leu	p.R979L	ENST00000257290	NM_006206.4	979	cGc/cTc																																																																															
TET2	54790	MSKCC	GRCh37	4	106155771	106155771	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	27	442	0	ENST00000380013.4:c.672A>T	p.Glu224Asp	p.E224D	ENST00000380013	NM_001127208.2	224	gaA/gaT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539114	187539114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			375	51	505	0	ENST00000441802.2:c.8626G>A	p.Asp2876Asn	p.D2876N	ENST00000441802	NM_005245.3	2876	Gac/Aac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584750	187584750	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			213	41	322	0	ENST00000441802.2:c.3283G>T	p.Asp1095Tyr	p.D1095Y	ENST00000441802	NM_005245.3	1095	Gat/Tat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629885	187629885	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			441	57	718	0	ENST00000441802.2:c.1097A>T	p.Lys366Met	p.K366M	ENST00000441802	NM_005245.3	366	aAg/aTg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522329	176522329	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	96	637	0	ENST00000292408.4:c.1520-2A>T		p.X507_splice	ENST00000292408	NM_213647.1	507																																																																																
HIST1H3E	8353	MSKCC	GRCh37	6	26225581	26225581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			495	100	792	0	ENST00000360408.1:c.199C>A	p.Pro67Thr	p.P67T	ENST00000360408	NM_003532.2	67	Ccg/Acg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187453	32187453	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			477	124	898	0	ENST00000375023.3:c.1426C>A	p.His476Asn	p.H476N	ENST00000375023	NM_004557.3	476	Cac/Aac																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188578	32188578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			479	75	895	0	ENST00000375023.3:c.877G>T	p.Asp293Tyr	p.D293Y	ENST00000375023	NM_004557.3	293	Gat/Tat																																																																															
FYN	2534	MSKCC	GRCh37	6	112017516	112017516	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			307	47	398	0	ENST00000368678.4:c.997G>T	p.Glu333Ter	p.E333*	ENST00000368678		333	Gag/Tag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117677917	117677917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			291	70	428	0	ENST00000368508.3:c.4016C>T	p.Ala1339Val	p.A1339V	ENST00000368508	NM_002944.2	1339	gCa/gTa																																																																															
HGF	3082	MSKCC	GRCh37	7	81381534	81381534	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			240	40	315	0	ENST00000222390.5:c.527A>G	p.Tyr176Cys	p.Y176C	ENST00000222390	NM_000601.4	176	tAc/tGc																																																																															
HGF	3082	MSKCC	GRCh37	7	81381577	81381577	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			170	28	226	0	ENST00000222390.5:c.484T>G	p.Phe162Val	p.F162V	ENST00000222390	NM_000601.4	162	Ttt/Gtt																																																																															
HGF	3082	MSKCC	GRCh37	7	81388078	81388078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			166	38	435	0	ENST00000222390.5:c.297C>A	p.Phe99Leu	p.F99L	ENST00000222390	NM_000601.4	99	ttC/ttA																																																																															
EZH2	2146	MSKCC	GRCh37	7	148523596	148523596	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			201	44	289	0	ENST00000320356.2:c.857G>C	p.Cys286Ser	p.C286S	ENST00000320356	NM_004456.4	286	tGt/tCt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956805	68956805	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			362	40	642	0	ENST00000288368.4:c.923A>G	p.Glu308Gly	p.E308G	ENST00000288368	NM_024870.2	308	gAg/gGg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636715	8636715	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			135	41	331	0	ENST00000356435.5:c.194G>C	p.Ser65Thr	p.S65T	ENST00000356435		65	aGc/aCc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87339164	87339164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			255	37	422	0	ENST00000277120.3:c.746C>A	p.Ser249Tyr	p.S249Y	ENST00000277120		249	tCc/tAc																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128201269	128201269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			396	61	762	0	ENST00000265960.3:c.1466G>T	p.Arg489Leu	p.R489L	ENST00000265960	NM_001006617.1	489	cGa/cTa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399852	139399852	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			492	109	1101	0	ENST00000277541.6:c.4496A>G	p.Tyr1499Cys	p.Y1499C	ENST00000277541	NM_017617.3	1499	tAc/tGc																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152853832	152853832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			29	26	59	1	ENST00000406277.2:c.732G>T	p.Glu244Asp	p.E244D	ENST00000406277	NM_152274.4	244	gaG/gaT																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562517	21562519	+	missense_variant	Missense_Mutation	ONP	CGG	CGG	AGC			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			52	11	79	0	ENST00000382592.4:c.1400_1402delinsGCT	p.Pro467_Ala468delinsArgSer	p.P467_A468delinsRS	ENST00000382592	NM_014572.2	467	cCCGcg/cGCTcg																																																																															
STK40	83931	MSKCC	GRCh37	1	36807432	36807434	+	missense_variant	Missense_Mutation	ONP	CGC	CGC	AGA			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			542	57	914	0	ENST00000373129.3:c.1230_1232delinsTCT	p.Arg411Leu	p.R411L	ENST00000373129	NM_032017.1	410	gtGCGa/gtTCTa																																																																															
ACVR1	90	MSKCC	GRCh37	2	158636926	158636927	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	26	527	0	ENST00000263640.3:c.253_254delinsT	p.Pro85CysfsTer47	p.P85Cfs*47	ENST00000263640	NM_001105.4	85	CCg/Tg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	104	321	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	61	205	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	68	224	0	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	102	357	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993708	72993708	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62640010		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	130	565	0	ENST00000268489.5:c.337G>A	p.Ala113Thr	p.A113T	ENST00000268489	NM_006885.3	113	Gcc/Acc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467637	50467637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	75	370	0	ENST00000331340.3:c.872C>T	p.Thr291Met	p.T291M	ENST00000331340	NM_006060.4	291	aCg/aTg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	99	377	4	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	153	643	3	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67655381	67655381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	111	381	0	ENST00000264010.4:c.1244G>A	p.Arg415Gln	p.R415Q	ENST00000264010	NM_006565.3	415	cGg/cAg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998898	11998898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	55	155	1	ENST00000353533.5:c.400C>T	p.Arg134Trp	p.R134W	ENST00000353533	NM_003010.3	134	Cgg/Tgg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44870231	44870231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	68	275	0	ENST00000377967.4:c.410G>T	p.Gly137Val	p.G137V	ENST00000377967	NM_021140.2	137	gGt/gTt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	97	329	2	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	119	375	3	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097625	11097625	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	162	734	1	ENST00000344626.4:c.810delC	p.Met272CysfsTer31	p.M272Cfs*31	ENST00000344626	NM_003072.3	269	Ccc/cc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	118	469	0	ENST00000245479.2:c.916delG	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270529	98270530	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778175153		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	74	282	0	ENST00000331920.6:c.114dup	p.Leu39AlafsTer51	p.L39Afs*51	ENST00000331920	NM_000264.3	38	-/G																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31019143	31019144	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	113	350	0	ENST00000375687.4:c.742dup	p.Glu248GlyfsTer6	p.E248Gfs*6	ENST00000375687	NM_015338.5	246	-/G																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	220	707	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	148	542	3	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	136	591	1	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658481	3658481	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140876043		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	142	445	0	ENST00000294008.3:c.485C>T	p.Thr162Met	p.T162M	ENST00000294008	NM_032444.2	162	aCg/aTg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131409	17131409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	179	603	2	ENST00000285071.4:c.43G>T	p.Gly15Cys	p.G15C	ENST00000285071	NM_144997.5	15	Ggc/Tgc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89352560	89352560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	141	496	0	ENST00000301030.4:c.779C>T	p.Pro260Leu	p.P260L	ENST00000301030	NM_001256183.1	260	cCg/cTg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47685282	47685282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	81	285	0	ENST00000347630.2:c.668C>T	p.Pro223Leu	p.P223L	ENST00000347630	NM_001007230.1	223	cCg/cTg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688707	47688707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	143	346	0	ENST00000347630.2:c.593G>A	p.Arg198Gln	p.R198Q	ENST00000347630	NM_001007230.1	198	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448526	49448526	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371342351		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	106	477	0	ENST00000301067.7:c.185C>T	p.Pro62Leu	p.P62L	ENST00000301067	NM_003482.3	62	cCg/cTg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814798	139814798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201857326		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	149	577	0	ENST00000247668.2:c.791C>T	p.Ala264Val	p.A264V	ENST00000247668	NM_021138.3	264	gCg/gTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332463	153332463	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	85	203	0	ENST00000281708.4:c.493del	p.Thr165GlnfsTer4	p.T165Qfs*4	ENST00000281708	NM_033632.3	165	Aca/ca																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967285	25967285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	113	319	0	ENST00000435504.4:c.1921C>T	p.Arg641Cys	p.R641C	ENST00000435504		641	Cgt/Tgt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781167	135781167	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	43	502	0	ENST00000298552.3:c.1798C>T	p.Gln600Ter	p.Q600*	ENST00000298552	NM_001162426.1	600	Cag/Tag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941889	71941889	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	160	580	0	ENST00000298229.2:c.1247C>A	p.Ser416Tyr	p.S416Y	ENST00000298229	NM_001567.3	416	tCc/tAc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748317	43748317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	131	467	0	ENST00000382044.4:c.2489C>A	p.Pro830His	p.P830H	ENST00000382044	NM_001141980.1	830	cCt/cAt																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40354455	40354455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	132	645	0	ENST00000293328.3:c.2140G>A	p.Ala714Thr	p.A714T	ENST00000293328	NM_012448.3	714	Gca/Aca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492743	56492743	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	319	473	0	ENST00000407977.2:c.196del	p.Glu66LysfsTer10	p.E66Kfs*10	ENST00000407977		66	Gaa/aa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955121	17955122	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	159	669	0	ENST00000458235.1:c.105dup	p.Gly36ArgfsTer16	p.G36Rfs*16	ENST00000458235	NM_000215.3	35	-/C																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271878	18271878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	158	562	1	ENST00000222254.8:c.481G>A	p.Asp161Asn	p.D161N	ENST00000222254	NM_005027.3	161	Gac/Aac																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643393	52643393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	122	279	0	ENST00000394830.3:c.2503C>T	p.Arg835Cys	p.R835C	ENST00000394830	NM_018313.4	835	Cgt/Tgt																																																																															
BCL6	604	MSKCC	GRCh37	3	187446152	187446152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	135	470	1	ENST00000232014.4:c.1536C>A	p.Ser512Arg	p.S512R	ENST00000232014	NM_001130845.1	512	agC/agA																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143044528	143044528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	95	329	0	ENST00000262992.4:c.1934C>T	p.Thr645Ile	p.T645I	ENST00000262992	NM_001101669.1	645	aCa/aTa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685285	86685285	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	82	194	0	ENST00000274376.6:c.3001A>T	p.Ile1001Phe	p.I1001F	ENST00000274376	NM_002890.2	1001	Att/Ttt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056527	26056527	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200279816		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	21	298	0	ENST00000343677.2:c.130A>G	p.Ile44Val	p.I44V	ENST00000343677	NM_005319.3	44	Atc/Gtc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170103	32170103	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	117	685	0	ENST00000375023.3:c.3505del	p.Arg1169GlyfsTer135	p.R1169Gfs*135	ENST00000375023	NM_004557.3	1169	Cgg/gg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803531	32803531	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	157	569	0	ENST00000374899.4:c.628C>T	p.Arg210Ter	p.R210*	ENST00000374899	NM_018833.2	210	Cga/Tga																																																																															
FYN	2534	MSKCC	GRCh37	6	112017549	112017549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	114	310	0	ENST00000368678.4:c.964A>G	p.Lys322Glu	p.K322E	ENST00000368678		322	Aag/Gag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864657	68864657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	69	257	1	ENST00000288368.4:c.28C>T	p.Arg10Cys	p.R10C	ENST00000288368	NM_024870.2	10	Cgc/Tgc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923181	39923181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	105	374	0	ENST00000378444.4:c.3527C>T	p.Thr1176Ile	p.T1176I	ENST00000378444	NM_001123385.1	1176	aCa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0049650-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			460	440	904	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
RB1	5925	MSKCC	GRCh37	13	49033844	49033844	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137853294		P-0049650-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			195	67	474	1	ENST00000267163.4:c.1981C>T	p.Arg661Trp	p.R661W	ENST00000267163	NM_000321.2	661	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0049650-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			738	2451	577	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62321140	62321140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049650-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			908	484	1000	0	ENST00000508582.2:c.2135C>T	p.Ser712Phe	p.S712F	ENST00000508582		712	tCc/tTc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98248124	98248124	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049650-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	241	486	0	ENST00000331920.6:c.427A>C	p.Thr143Pro	p.T143P	ENST00000331920	NM_000264.3	143	Act/Cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577145	7577150	+	inframe_deletion	In_Frame_Del	DEL	GTAGAT	GTAGAT	-			P-0049912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	112	512	0	ENST00000269305.4:c.788_793del	p.Asn263_Leu265delinsMet	p.N263_L265delinsM	ENST00000269305	NM_001126112.2	263	aATCTACtg/atg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37667870	37667870	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	128	413	0	ENST00000447079.4:c.2755G>T	p.Val919Phe	p.V919F	ENST00000447079	NM_015083.1	919	Gtt/Ttt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59857674	59857674	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	17	356	0	ENST00000259008.2:c.1883G>T	p.Gly628Val	p.G628V	ENST00000259008	NM_032043.2	628	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112174826	112174827	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0049912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	20	272	0	ENST00000257430.4:c.3537_3538del	p.Tyr1179Ter	p.Y1179*	ENST00000257430	NM_000038.5	1179	TAt/t																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0049913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	74	926	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	24	337	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101186	27101186	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	61	882	1	ENST00000324856.7:c.4468G>T	p.Glu1490Ter	p.E1490*	ENST00000324856	NM_006015.4	1490	Gag/Tag																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482868	67482888	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	GTCTTAGAGACATCAAGTATG	GTCTTAGAGACATCAAGTATG	-			P-0049913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	35	584	1	ENST00000327367.4:c.1274_*16del		p.*425*	ENST00000327367	NM_005902.3	424																																																																																
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0049917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	203	888	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11169376	11169376	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	133	500	0	ENST00000361445.4:c.7499T>A	p.Ile2500Asn	p.I2500N	ENST00000361445	NM_004958.3	2500	aTt/aAt																																																																															
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	124	263	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119875	70119875	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	209	669	0	ENST00000245479.2:c.877G>T	p.Glu293Ter	p.E293*	ENST00000245479	NM_000346.3	293	Gag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29670155	29670155	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0049919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	80	314	0	ENST00000358273.4:c.7189+2T>C		p.X2397_splice	ENST00000358273	NM_001042492.2	2397																																																																																
TP53	7157	MSKCC	GRCh37	17	7577152	7577167	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCACTACTCAGGATA	ACCACTACTCAGGATA	TCT			P-0049919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	127	512	2	ENST00000269305.4:c.783-12_786delinsAGA		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0049924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	85	744	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175199	112175199	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	17	258	0	ENST00000257430.4:c.3910del	p.Ile1304Ter	p.I1304*	ENST00000257430	NM_000038.5	1303	cAa/ca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105875	27105876	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	154	551	0	ENST00000324856.7:c.5487dup	p.Lys1830Ter	p.K1830*	ENST00000324856	NM_006015.4	1829	gat/gaTt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10252733	10252733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1132	129	712	2	ENST00000340748.4:c.3232G>A	p.Gly1078Ser	p.G1078S	ENST00000340748		1078	Ggc/Agc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11114018	11114018	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0049927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	127	556	0	ENST00000344626.4:c.1946A>G	p.Tyr649Cys	p.Y649C	ENST00000344626	NM_003072.3	649	tAt/tGt																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22127191	22127191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	444	540	0	ENST00000215832.6:c.937C>G	p.Leu313Val	p.L313V	ENST00000215832	NM_002745.4	313	Ctg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	90	455	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MGA	23269	MSKCC	GRCh37	15	42041366	42041366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	205	596	1	ENST00000219905.7:c.5561C>T	p.Ser1854Phe	p.S1854F	ENST00000219905	NM_001164273.1	1854	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577123	7577123	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	183	665	0	ENST00000269305.4:c.815T>G	p.Val272Gly	p.V272G	ENST00000269305	NM_001126112.2	272	gTg/gGg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220400	1220400	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	172	740	0	ENST00000326873.7:c.493G>T	p.Glu165Ter	p.E165*	ENST00000326873	NM_000455.4	165	Gag/Tag																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086017	16086017	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	55	594	1	ENST00000281043.3:c.1193G>T	p.Arg398Leu	p.R398L	ENST00000281043	NM_005378.4	398	cGg/cTg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500825	149500825	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	108	660	0	ENST00000261799.4:c.2405A>T	p.Asp802Val	p.D802V	ENST00000261799	NM_002609.3	802	gAc/gTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048231	180048231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	45	827	0	ENST00000261937.6:c.2042C>T	p.Thr681Met	p.T681M	ENST00000261937	NM_182925.4	681	aCg/aTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508517	106508517	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	68	305	0	ENST00000359195.3:c.511G>T	p.Asp171Tyr	p.D171Y	ENST00000359195	NM_002649.2	171	Gat/Tat																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370775	55370775	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	98	516	0	ENST00000297316.4:c.77G>T	p.Gly26Val	p.G26V	ENST00000297316	NM_022454.3	26	gGg/gTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389329	8389329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	122	558	0	ENST00000356435.5:c.4289G>T	p.Gly1430Val	p.G1430V	ENST00000356435		1430	gGa/gTa																																																																															
CDH1	999	MSKCC	GRCh37	16	68835627	68835627	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	594	420	0	ENST00000261769.5:c.220del	p.Arg74AspfsTer9	p.R74Dfs*9	ENST00000261769	NM_004360.3	73	aCc/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0049963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	84	887	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																															
RB1	5925	MSKCC	GRCh37	13	48878115	48878115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	10	259	0	ENST00000267163.4:c.68del	p.Pro23ArgfsTer42	p.P23Rfs*42	ENST00000267163	NM_000321.2	23	Ccg/cg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450399	50450399	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	44	520	0	ENST00000331340.3:c.583C>A	p.His195Asn	p.H195N	ENST00000331340	NM_006060.4	195	Cac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0049977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	156	687	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs926053251		P-0049977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	57	544	0	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0049977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	438	634	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	154	771	1	ENST00000269305.4:c.548C>A	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tAa																																																																															
PARP1	142	MSKCC	GRCh37	1	226564979	226564979	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	258	444	0	ENST00000366794.5:c.1771del	p.Arg591ValfsTer5	p.R591Vfs*5	ENST00000366794	NM_001618.3	591	Cgt/gt																																																																															
AKT1	207	MSKCC	GRCh37	14	105258972	105258972	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1192	93	912	0	ENST00000349310.3:c.9C>A	p.Asp3Glu	p.D3E	ENST00000349310	NM_001014432.1	3	gaC/gaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0049979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	589	902	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89871709	89871709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144560850		P-0049979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1212	212	740	3	ENST00000389301.3:c.688G>A	p.Val230Ile	p.V230I	ENST00000389301	NM_000135.2	230	Gtc/Atc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900946	114900946	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	342	611	0	ENST00000543371.1:c.556A>G	p.Asn186Asp	p.N186D	ENST00000543371	NM_001198531.1	186	Aac/Gac																																																																															
FLT1	2321	MSKCC	GRCh37	13	28886129	28886129	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0049979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	273	492	0	ENST00000282397.4:c.3492+1G>T		p.X1164_splice	ENST00000282397	NM_002019.4	1164																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212537954	212537954	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	287	544	0	ENST00000342788.4:c.1651A>G	p.Ile551Val	p.I551V	ENST00000342788	NM_005235.2	551	Atc/Gtc																																																																															
KIT	3815	MSKCC	GRCh37	4	55564652	55564652	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	219	651	2	ENST00000288135.5:c.540T>A	p.His180Gln	p.H180Q	ENST00000288135	NM_000222.2	180	caT/caA																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270451	98270451	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	559	726	0	ENST00000331920.6:c.193A>C	p.Ile65Leu	p.I65L	ENST00000331920	NM_000264.3	65	Att/Ctt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	118	506	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429978	78429978	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	61	241	0	ENST00000370768.2:c.901del	p.Ile301TyrfsTer22	p.I301Yfs*22	ENST00000370768	NM_003902.3	301	Ata/ta																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	57	295	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	77	390	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	89	388	4	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	162	825	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	85	737	1	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943641	9943641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	129	547	0	ENST00000330684.3:c.1300G>A	p.Val434Met	p.V434M	ENST00000330684	NM_001134407.1	434	Gtg/Atg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070349	37070349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1220422495		P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	83	369	0	ENST00000231790.2:c.1489del	p.Arg497GlyfsTer11	p.R497Gfs*11	ENST00000231790	NM_000249.3	495	aCc/ac																																																																															
KDM5A	5927	MSKCC	GRCh37	12	406317	406318	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	60	441	0	ENST00000399788.2:c.4123dup	p.Cys1375LeufsTer2	p.C1375Lfs*2	ENST00000399788	NM_001042603.1	1375	tgt/tTgt																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111907692	111907692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	47	313	0	ENST00000393256.3:c.466G>A	p.Gly156Arg	p.G156R	ENST00000393256	NM_006538.4	156	Gga/Aga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533905	63533905	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	131	627	0	ENST00000307078.5:c.1249delG	p.Ala417ArgfsTer41	p.A417Rfs*41	ENST00000307078	NM_004655.3	417	Gcg/cg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	110	290	0	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	93	910	7	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354008	15354008	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	25	301	1	ENST00000263377.2:c.2872del	p.Leu958CysfsTer110	p.L958Cfs*110	ENST00000263377	NM_058243.2	958	Ctg/tg																																																																															
ATR	545	MSKCC	GRCh37	3	142257448	142257448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	72	280	0	ENST00000350721.4:c.3601C>T	p.Arg1201Cys	p.R1201C	ENST00000350721	NM_001184.3	1201	Cgc/Tgc																																																																															
NF1	4763	MSKCC	GRCh37	17	29562747	29562747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	65	352	1	ENST00000358273.4:c.3827G>A	p.Arg1276Gln	p.R1276Q	ENST00000358273	NM_001042492.2	1276	cGa/cAa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	57	290	0	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	175	800	8	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	220	633	7	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
ATRX	546	MSKCC	GRCh37	X	76890149	76890150	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	38	429	2	ENST00000373344.5:c.4744dup	p.Thr1582AsnfsTer19	p.T1582Nfs*19	ENST00000373344	NM_000489.3	1582	aca/aAca																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455144	50455144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	99	369	0	ENST00000331340.3:c.691G>A	p.Gly231Ser	p.G231S	ENST00000331340	NM_006060.4	231	Ggc/Agc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	105	428	1	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	56	239	0	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	104	388	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FYN	2534	MSKCC	GRCh37	6	112017578	112017578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	59	396	1	ENST00000368678.4:c.935C>T	p.Ala312Val	p.A312V	ENST00000368678		312	gCg/gTg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931452	131931453	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	77	336	0	ENST00000265335.6:c.2164_2165del	p.Lys722GlyfsTer5	p.K722Gfs*5	ENST00000265335		719	ctAAaa/ctaa																																																																															
CASP8	841	MSKCC	GRCh37	2	202149799	202149799	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	44	484	0	ENST00000358485.4:c.1245delT	p.Phe415LeufsTer26	p.F415Lfs*26	ENST00000358485	NM_001080125.1	414	Ttt/tt																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	106	488	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
STK40	83931	MSKCC	GRCh37	1	36820836	36820836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	126	476	0	ENST00000373129.3:c.541G>A	p.Val181Met	p.V181M	ENST00000373129	NM_032017.1	181	Gtg/Atg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116262	209116263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs754375602		P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	28	216	0	ENST00000345146.2:c.13dup	p.Ile5AsnfsTer13	p.I5Nfs*13	ENST00000345146	NM_005896.2	5	atc/aAtc																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383944	84383944	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	42	401	1	ENST00000321945.7:c.908del	p.Asn303IlefsTer17	p.N303Ifs*17	ENST00000321945	NM_139076.2	303	aAt/at																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221206	5221206	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200191658		P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	170	731	0	ENST00000357368.4:c.3260C>T	p.Thr1087Met	p.T1087M	ENST00000357368	NM_002850.3	1087	aCg/aTg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426645	47426645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	59	646	0	ENST00000377045.4:c.890G>A	p.Arg297Gln	p.R297Q	ENST00000377045	NM_001654.4	297	cGg/cAg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524567	103524568	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	45	172	0	ENST00000355739.4:c.2705dup	p.Asn902LysfsTer7	p.N902Kfs*7	ENST00000355739	NM_000123.3	900	caa/cAaa																																																																															
TET1	80312	MSKCC	GRCh37	10	70333105	70333105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	166	561	3	ENST00000373644.4:c.1010C>T	p.Ala337Val	p.A337V	ENST00000373644	NM_030625.2	337	gCg/gTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	205	441	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	202	903	1	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
ATM	472	MSKCC	GRCh37	11	108164163	108164164	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	27	176	0	ENST00000278616.4:c.4741dupA	p.Ile1581AsnfsTer5	p.I1581Nfs*5	ENST00000278616	NM_000051.3	1579	caa/cAaa																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434182	12434182	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1187529076		P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	35	373	1	ENST00000287820.6:c.556del	p.Ser186ValfsTer47	p.S186Vfs*47	ENST00000287820	NM_015869.4	184	Aaa/aa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21553849	21553849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	136	401	0	ENST00000382592.4:c.2753C>T	p.Pro918Leu	p.P918L	ENST00000382592	NM_014572.2	918	cCc/cTc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435833	56435834	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	121	567	0	ENST00000407977.2:c.1303_1304insA	p.Leu435HisfsTer8	p.L435Hfs*8	ENST00000407977		435	cta/cAta																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	59	612	2	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629776	187629776	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	49	486	0	ENST00000441802.2:c.1206del	p.Phe402LeufsTer12	p.F402Lfs*12	ENST00000441802	NM_005245.3	402	ttT/tt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323133	31323133	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	200	764	2	ENST00000412585.2:c.856C>T	p.Gln286Ter	p.Q286*	ENST00000412585	NM_005514.6	286	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435199	49435199	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	184	708	2	ENST00000301067.7:c.6354delC	p.Ala2119LeufsTer25	p.A2119Lfs*25	ENST00000301067	NM_003482.3	2118	ccC/cc																																																																															
TEK	7010	MSKCC	GRCh37	9	27158026	27158026	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	123	505	0	ENST00000380036.4:c.255del	p.Val86LeufsTer31	p.V86Lfs*31	ENST00000380036	NM_000459.3	84	Aaa/aa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279760	46279760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	90	420	1	ENST00000371998.3:c.3686G>A	p.Arg1229His	p.R1229H	ENST00000371998		1229	cGc/cAc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798457	32798457	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	182	751	0	ENST00000374899.4:c.1399delG	p.Val467LeufsTer2	p.V467Lfs*2	ENST00000374899	NM_018833.2	467	Gtt/tt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180035975	180035975	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138599624		P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	149	639	2	ENST00000261937.6:c.3886G>A	p.Gly1296Ser	p.G1296S	ENST00000261937	NM_182925.4	1296	Ggc/Agc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216188	36216189	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	173	773	0	ENST00000222270.7:c.3602dup	p.Met1202AspfsTer22	p.M1202Dfs*22	ENST00000222270	NM_014727.1	1199	ggc/ggCc																																																																															
CIC	23152	MSKCC	GRCh37	19	42795483	42795483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	158	708	0	ENST00000575354.2:c.2563G>A	p.Gly855Ser	p.G855S	ENST00000575354	NM_015125.3	855	Ggc/Agc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068421	26068421	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	47	267	0	ENST00000435504.4:c.69del	p.Lys23AsnfsTer7	p.K23Nfs*7	ENST00000435504		23	aaA/aa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420309	88420309	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	93	377	0	ENST00000360948.2:c.2377C>T	p.Arg793Ter	p.R793*	ENST00000360948	NM_001012338.2	793	Cga/Tga																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422091	81422091	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	133	538	0	ENST00000298171.2:c.67G>T	p.Gly23Trp	p.G23W	ENST00000298171	NM_000369.2	23	Ggg/Tgg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69050701	69050701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	51	331	1	ENST00000288368.4:c.4036G>A	p.Glu1346Lys	p.E1346K	ENST00000288368	NM_024870.2	1346	Gaa/Aaa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783767	50783767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	93	455	0	ENST00000398568.2:c.158G>A	p.Arg53His	p.R53H	ENST00000398568	NM_001042412.1	53	cGt/cAt																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139566484	139566484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	168	911	1	ENST00000308874.7:c.743G>A	p.Gly248Asp	p.G248D	ENST00000308874		248	gGc/gAc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665362	138665362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	121	822	0	ENST00000330315.3:c.203G>A	p.Arg68His	p.R68H	ENST00000330315	NM_023067.3	68	cGc/cAc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324139	31324139	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	275	697	1	ENST00000412585.2:c.424T>C	p.Tyr142His	p.Y142H	ENST00000412585	NM_005514.6	142	Tac/Cac																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370763	55370763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	174	558	2	ENST00000297316.4:c.65C>T	p.Ala22Val	p.A22V	ENST00000297316	NM_022454.3	22	gCg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214058	36214058	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	240	821	0	ENST00000222270.7:c.2884C>T	p.Arg962Cys	p.R962C	ENST00000222270	NM_014727.1	962	Cgc/Tgc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246297	46246297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	43	310	1	ENST00000334344.6:c.4391G>A	p.Arg1464His	p.R1464H	ENST00000334344	NM_152641.2	1464	cGc/cAc																																																																															
AR	367	MSKCC	GRCh37	X	66905905	66905905	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	72	351	0	ENST00000374690.3:c.1822C>T	p.Arg608Ter	p.R608*	ENST00000374690	NM_000044.3	608	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557981	187557981	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	90	382	0	ENST00000441802.2:c.3730C>T	p.Gln1244Ter	p.Q1244*	ENST00000441802	NM_005245.3	1244	Cag/Tag																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800223	32800223	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	152	426	0	ENST00000374899.4:c.1159del	p.Val387CysfsTer4	p.V387Cfs*4	ENST00000374899	NM_018833.2	387	Gtg/tg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981891	70981892	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	95	807	0	ENST00000276594.2:c.204dup	p.Phe69LeufsTer59	p.F69Lfs*59	ENST00000276594	NM_024504.3	68	-/C																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598802	28598802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	97	729	0	ENST00000253063.3:c.362C>T	p.Ala121Val	p.A121V	ENST00000253063	NM_031459.4	121	gCc/gTc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46546409	46546410	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	82	302	0	ENST00000262741.5:c.119dup	p.Pro41AlafsTer3	p.P41Afs*3	ENST00000262741	NM_003629.3	40	aag/aaAg																																																																															
MCL1	4170	MSKCC	GRCh37	1	150549952	150549952	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	53	187	0	ENST00000369026.2:c.952T>C	p.Phe318Leu	p.F318L	ENST00000369026	NM_021960.4	318	Ttc/Ctc																																																																															
RET	5979	MSKCC	GRCh37	10	43609963	43609963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	207	782	0	ENST00000355710.3:c.1915G>A	p.Ala639Thr	p.A639T	ENST00000355710	NM_020975.4	639	Gca/Aca																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114901006	114901006	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	176	551	0	ENST00000543371.1:c.616T>C	p.Tyr206His	p.Y206H	ENST00000543371	NM_001198531.1	206	Tac/Cac																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127679	64127679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	283	889	2	ENST00000334205.4:c.172G>A	p.Ala58Thr	p.A58T	ENST00000334205	NM_003942.2	58	Gcg/Acg																																																																															
ATM	472	MSKCC	GRCh37	11	108196045	108196045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	40	280	0	ENST00000278616.4:c.6581C>T	p.Thr2194Ile	p.T2194I	ENST00000278616	NM_000051.3	2194	aCa/aTa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18499604	18499604	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	84	409	0	ENST00000266497.5:c.1459T>C	p.Ser487Pro	p.S487P	ENST00000266497		487	Tcc/Ccc																																																																															
MDM2	4193	MSKCC	GRCh37	12	69222558	69222558	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	54	282	0	ENST00000462284.1:c.531T>A	p.Asn177Lys	p.N177K	ENST00000462284	NM_002392.5	177	aaT/aaA																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233090	69233090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	124	276	0	ENST00000462284.1:c.955C>T	p.Pro319Ser	p.P319S	ENST00000462284	NM_002392.5	319	Ccc/Tcc																																																																															
MSI1	4440	MSKCC	GRCh37	12	120785317	120785317	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	240	591	1	ENST00000257552.2:c.791C>T	p.Ala264Val	p.A264V	ENST00000257552	NM_002442.3	264	gCc/gTc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437633	110437635	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	157	748	1	ENST00000375856.3:c.766_768del	p.Phe256del	p.F256del	ENST00000375856	NM_003749.2	256	TTC/-																																																																															
MGA	23269	MSKCC	GRCh37	15	42041581	42041581	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	62	494	0	ENST00000219905.7:c.5776T>G	p.Ser1926Ala	p.S1926A	ENST00000219905	NM_001164273.1	1926	Tca/Gca																																																																															
MGA	23269	MSKCC	GRCh37	15	42041584	42041584	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	119	498	0	ENST00000219905.7:c.5779G>T	p.Gly1927Ter	p.G1927*	ENST00000219905	NM_001164273.1	1927	Gga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857030	9857030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	19	227	0	ENST00000330684.3:c.4371G>A	p.Met1457Ile	p.M1457I	ENST00000330684	NM_001134407.1	1457	atG/atA																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81941374	81941374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	102	423	0	ENST00000359376.3:c.1552C>G	p.Pro518Ala	p.P518A	ENST00000359376	NM_002661.3	518	Ccc/Gcc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89831393	89831393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	81	608	0	ENST00000389301.3:c.2683C>T	p.Pro895Ser	p.P895S	ENST00000389301	NM_000135.2	895	Ccc/Tcc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210795	2210795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	66	596	0	ENST00000398665.3:c.1292C>T	p.Thr431Ile	p.T431I	ENST00000398665	NM_032482.2	431	aCt/aTt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303200	15303200	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	188	888	0	ENST00000263388.2:c.328C>A	p.Arg110Ser	p.R110S	ENST00000263388	NM_000435.2	110	Cgt/Agt																																																																															
CD79A	973	MSKCC	GRCh37	19	42383083	42383083	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	57	296	0	ENST00000221972.3:c.103A>G	p.Met35Val	p.M35V	ENST00000221972	NM_021601.3	35	Atg/Gtg																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111907684	111907684	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	51	323	1	ENST00000393256.3:c.458G>T	p.Arg153Leu	p.R153L	ENST00000393256	NM_006538.4	153	cGg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713379	40713379	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	133	730	0	ENST00000373198.4:c.4136T>A	p.Leu1379Gln	p.L1379Q	ENST00000373198	NM_133170.3	1379	cTg/cAg																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114184	73114184	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	72	353	0	ENST00000356692.5:c.820G>T	p.Gly274Ter	p.G274*	ENST00000356692		274	Gga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480493	89480493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	61	233	0	ENST00000336596.2:c.2330C>T	p.Ala777Val	p.A777V	ENST00000336596	NM_005233.5	777	gCt/gTt																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749546	41749546	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	123	496	0	ENST00000226382.2:c.249del	p.Tyr83Ter	p.Y83*	ENST00000226382	NM_003924.3	83	taC/ta																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213911	66213911	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	17	304	0	ENST00000273854.3:c.2519T>A	p.Ile840Asn	p.I840N	ENST00000273854	NM_004439.5	840	aTt/aAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187525088	187525088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	39	372	0	ENST00000441802.2:c.10592T>C	p.Ile3531Thr	p.I3531T	ENST00000441802	NM_005245.3	3531	aTt/aCt																																																																															
SDHA	6389	MSKCC	GRCh37	5	218507	218507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	59	203	1	ENST00000264932.6:c.37G>A	p.Ala13Thr	p.A13T	ENST00000264932	NM_004168.2	13	Gct/Act																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500876	149500876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	131	530	0	ENST00000261799.4:c.2354G>T	p.Arg785Met	p.R785M	ENST00000261799	NM_002609.3	785	aGg/aTg																																																																															
FYN	2534	MSKCC	GRCh37	6	112041151	112041151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	73	483	0	ENST00000368678.4:c.104C>T	p.Thr35Ile	p.T35I	ENST00000368678		35	aCc/aTc																																																																															
MET	4233	MSKCC	GRCh37	7	116340337	116340337	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	57	203	0	ENST00000397752.3:c.1199G>T	p.Arg400Met	p.R400M	ENST00000397752	NM_000245.2	400	aGg/aTg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87359930	87359930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	27	275	0	ENST00000277120.3:c.1238G>A	p.Arg413Lys	p.R413K	ENST00000277120		413	aGa/aAa																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139818373	139818373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	225	729	1	ENST00000247668.2:c.1208G>A	p.Arg403Gln	p.R403Q	ENST00000247668	NM_021138.3	403	cGa/cAa																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841030	15841030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	64	625	0	ENST00000307771.7:c.1114G>A	p.Asp372Asn	p.D372N	ENST00000307771	NM_005089.3	372	Gac/Aac																																																																															
STAG2	10735	MSKCC	GRCh37	X	123205159	123205161	+	inframe_deletion	In_Frame_Del	DEL	ATA	ATA	-			P-0049984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	20	313	0	ENST00000218089.9:c.2525_2527del	p.Asn842del	p.N842del	ENST00000218089	NM_001042749.1	840	gATAat/gat																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121913482		P-0049986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	15	842	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	28	448	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578196	7578196	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	35	702	0	ENST00000269305.4:c.653T>A	p.Val218Glu	p.V218E	ENST00000269305	NM_001126112.2	218	gTg/gAg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608282	28608282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	27	551	0	ENST00000241453.7:c.1774G>A	p.Val592Ile	p.V592I	ENST00000241453	NM_004119.2	592	Gtt/Att																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0049992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	50	401	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0049992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	83	681	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0049992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	66	264	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912654		P-0049992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	164	998	0	ENST00000269305.4:c.469G>A	p.Val157Ile	p.V157I	ENST00000269305	NM_001126112.2	157	Gtc/Atc																																																																															
ALK	238	MSKCC	GRCh37	2	29606678	29606678	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs188859061		P-0049992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	29	632	2	ENST00000389048.3:c.1202G>A	p.Arg401Gln	p.R401Q	ENST00000389048	NM_004304.4	401	cGa/cAa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468083	50468083	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775617502		P-0049992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	65	653	1	ENST00000331340.3:c.1318G>A	p.Ala440Thr	p.A440T	ENST00000331340	NM_006060.4	440	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	581	982	0	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86628433	86628437	+	frameshift_variant	Frame_Shift_Del	DEL	TTACT	TTACT	-			P-0049993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	81	274	0	ENST00000274376.6:c.806_810del	p.Leu269ProfsTer11	p.L269Pfs*11	ENST00000274376	NM_002890.2	268	TTACTt/t																																																																															
LATS1	9113	MSKCC	GRCh37	6	149982980	149982980	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	151	431	0	ENST00000253339.5:c.3278A>T	p.Tyr1093Phe	p.Y1093F	ENST00000253339		1093	tAt/tTt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141559387	141559387	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	175	767	0	ENST00000220592.5:c.1414G>C	p.Glu472Gln	p.E472Q	ENST00000220592	NM_012154.3	472	Gag/Cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	470	386	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	58	267	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764146326		P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	189	652	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																															
TP63	8626	MSKCC	GRCh37	3	189586425	189586425	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	136	399	0	ENST00000264731.3:c.1049G>C	p.Arg350Thr	p.R350T	ENST00000264731	NM_003722.4	350	aGa/aCa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423503	88423503	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	135	486	0	ENST00000360948.2:c.2332G>A	p.Glu778Lys	p.E778K	ENST00000360948	NM_001012338.2	778	Gag/Aag																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910756	29910756	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	172	718	0	ENST00000376809.5:c.296G>C	p.Arg99Pro	p.R99P	ENST00000376809	NM_002116.7	99	cGa/cCa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039904	47039904	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	344	342	0	ENST00000329236.7:c.1013A>G	p.Gln338Arg	p.Q338R	ENST00000329236	NM_001204466.1	338	cAg/cGg																																																																															
ATM	472	MSKCC	GRCh37	11	108206684	108206684	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	128	259	0	ENST00000278616.4:c.8264A>G	p.Tyr2755Cys	p.Y2755C	ENST00000278616	NM_000051.3	2755	tAt/tGt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38947457	38947457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	97	252	0	ENST00000357387.3:c.4223C>T	p.Ser1408Leu	p.S1408L	ENST00000357387	NM_152756.3	1408	tCa/tTa																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073521	8073521	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	26	348	0	ENST00000377482.5:c.1138C>G	p.Leu380Val	p.L380V	ENST00000377482	NM_018948.3	380	Ctg/Gtg																																																																															
STK40	83931	MSKCC	GRCh37	1	36823872	36823872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	130	462	0	ENST00000373129.3:c.310G>C	p.Asp104His	p.D104H	ENST00000373129	NM_032017.1	104	Gat/Cat																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115273024	115273024	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	203	451	0	ENST00000438362.2:c.1349G>C	p.Arg450Thr	p.R450T	ENST00000438362	NM_001242891.1	450	aGa/aCa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864729	57864729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	187	744	0	ENST00000228682.2:c.2206G>A	p.Glu736Lys	p.E736K	ENST00000228682	NM_005269.2	736	Gaa/Aaa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991356	72991356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	153	603	1	ENST00000268489.5:c.2689G>T	p.Gly897Trp	p.G897W	ENST00000268489	NM_006885.3	897	Ggg/Tgg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246296	41246296	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	182	508	0	ENST00000357654.3:c.1252G>C	p.Glu418Gln	p.E418Q	ENST00000357654	NM_007294.3	418	Gag/Cag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71096189	71096189	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	121	284	1	ENST00000318789.4:c.568C>T	p.Gln190Ter	p.Q190*	ENST00000318789	NM_032682.5	190	Cag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480319	89480319	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	61	235	0	ENST00000336596.2:c.2156C>A	p.Thr719Asn	p.T719N	ENST00000336596	NM_005233.5	719	aCt/aAt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149510151	149510151	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	257	694	0	ENST00000261799.4:c.1318G>C	p.Gly440Arg	p.G440R	ENST00000261799	NM_002609.3	440	Ggc/Cgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945043	151945044	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	56	421	0	ENST00000262189.6:c.2475_2476delinsTT	p.Met825_Gly826delinsIleCys	p.M825_G826delinsIC	ENST00000262189	NM_170606.2	825	atGGgt/atTTgt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395252	139395252	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	32	817	0	ENST00000277541.6:c.5686G>C	p.Glu1896Gln	p.E1896Q	ENST00000277541	NM_017617.3	1896	Gag/Cag																																																																															
AR	367	MSKCC	GRCh37	X	66905936	66905936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	125	177	0	ENST00000374690.3:c.1853G>T	p.Arg618Leu	p.R618L	ENST00000374690	NM_000044.3	618	cGg/cTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	92	214	0				ENST00000310581	NM_198253.2																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0049999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	86	273	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913233		P-0049999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	146	606	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117708093	117708093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	52	315	0	ENST00000368508.3:c.2084G>A	p.Gly695Asp	p.G695D	ENST00000368508	NM_002944.2	695	gGc/gAc																																																																															
RAC1	5879	MSKCC	GRCh37	7	6426893	6426893	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	90	299	0	ENST00000356142.4:c.86C>G	p.Pro29Arg	p.P29R	ENST00000356142	NM_018890.3	29	cCt/cGt																																																																															
ATRX	546	MSKCC	GRCh37	X	76812962	76812962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	107	342	0	ENST00000373344.5:c.6659C>T	p.Ser2220Leu	p.S2220L	ENST00000373344	NM_000489.3	2220	tCa/tTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	241	366	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111554	8111554	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	312	520	0	ENST00000346208.3:c.1040T>G	p.Leu347Arg	p.L347R	ENST00000346208		347	cTt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921555	178921555	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	198	291	0	ENST00000263967.3:c.1037T>G	p.Val346Gly	p.V346G	ENST00000263967	NM_006218.2	346	gTa/gGa																																																																															
RB1	5925	MSKCC	GRCh37	13	49027164	49027165	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GACCGAGA			P-0050001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	193	280	0	ENST00000267163.4:c.1732_1739dup	p.Gly581ThrfsTer33	p.G581Tfs*33	ENST00000267163	NM_000321.2	577	-/GACCGAGA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0050003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	783	511	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0050003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	346	612	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0050003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	137	331	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683691	162683691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	173	547	0	ENST00000366898.1:c.278G>A	p.Gly93Glu	p.G93E	ENST00000366898	NM_004562.2	93	gGa/gAa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602541	10602541	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	352	812	0	ENST00000171111.5:c.1037A>G	p.Asn346Ser	p.N346S	ENST00000171111	NM_203500.1	346	aAc/aGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	117	355	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579328	7579328	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	126	648	0	ENST00000269305.4:c.359A>G	p.Lys120Arg	p.K120R	ENST00000269305	NM_001126112.2	120	aAg/aGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0050006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	282	394	1	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0050006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	414	661	1	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5286129	5286129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	302	727	11	ENST00000357368.4:c.23G>A	p.Gly8Asp	p.G8D	ENST00000357368	NM_002850.3	8	gGc/gAc																																																																															
AXL	558	MSKCC	GRCh37	19	41763406	41763406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	73	502	1	ENST00000301178.4:c.2205C>A	p.Phe735Leu	p.F735L	ENST00000301178	NM_021913.4	735	ttC/ttA																																																																															
APC	324	MSKCC	GRCh37	5	112175138	112175138	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	87	211	0	ENST00000257430.4:c.3847del	p.Ala1283LeufsTer5	p.A1283Lfs*5	ENST00000257430	NM_000038.5	1283	Gct/ct																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918691	44918691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	44	448	0	ENST00000377967.4:c.1174G>A	p.Ala392Thr	p.A392T	ENST00000377967	NM_021140.2	392	Gca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	208	394	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	209	660	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252866	36252866	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	37	291	0	ENST00000300305.3:c.496C>T	p.Arg166Ter	p.R166*	ENST00000300305		166	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120016	70120016	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	94	123	0	ENST00000245479.2:c.1018C>T	p.Gln340Ter	p.Q340*	ENST00000245479	NM_000346.3	340	Cag/Tag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	427	706	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175577	112175577	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	199	293	0	ENST00000257430.4:c.4288del	p.Thr1430ProfsTer43	p.T1430Pfs*43	ENST00000257430	NM_000038.5	1429	cAa/ca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426415	49426415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	148	792	0	ENST00000301067.7:c.12073G>A	p.Glu4025Lys	p.E4025K	ENST00000301067	NM_003482.3	4025	Gaa/Aaa																																																																															
REL	5966	MSKCC	GRCh37	2	61149452	61149452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	126	293	0	ENST00000295025.8:c.1642G>A	p.Ala548Thr	p.A548T	ENST00000295025	NM_002908.2	548	Gcc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106650	27106651	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTC			P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	419	571	0	ENST00000324856.7:c.6264_6266dup	p.Leu2089dup	p.L2089dup	ENST00000324856	NM_006015.4	2089	-/CTC																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982104	201982104	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	244	727	0	ENST00000359651.3:c.628T>G	p.Ser210Ala	p.S210A	ENST00000359651		210	Tca/Gca																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200902	67200902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	239	630	0	ENST00000312629.5:c.890G>A	p.Arg297Gln	p.R297Q	ENST00000312629	NM_003952.2	297	cGg/cAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119969	70120021	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAGGCG	CCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAGGCG	-			P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	32	350	0	ENST00000245479.2:c.975_1027del	p.Ser330AlafsTer230	p.S330Afs*230	ENST00000245479	NM_000346.3	324	aCCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAGGCG/a																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272520	15272520	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	194	545	0	ENST00000263388.2:c.5919G>T	p.Glu1973Asp	p.E1973D	ENST00000263388	NM_000435.2	1973	gaG/gaT																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612866	228612866	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138699472		P-0050008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	282	727	1	ENST00000366696.1:c.161G>A	p.Arg54His	p.R54H	ENST00000366696	NM_003493.2	54	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175069	112175069	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	24	157	0	ENST00000257430.4:c.3778C>T	p.Gln1260Ter	p.Q1260*	ENST00000257430	NM_000038.5	1260	Cag/Tag																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2647222	2647222	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	132	458	0	ENST00000342085.4:c.1500G>T	p.Trp500Cys	p.W500C	ENST00000342085	NM_002613.4	500	tgG/tgT																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349016	89349016	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	82	610	0	ENST00000301030.4:c.3934G>C	p.Gly1312Arg	p.G1312R	ENST00000301030	NM_001256183.1	1312	Ggg/Cgg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15973779	15973785	+	frameshift_variant	Frame_Shift_Del	DEL	ATTTGAC	ATTTGAC	-			P-0050008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	116	410	1	ENST00000268712.3:c.4207_4213del	p.Val1403ProfsTer2	p.V1403Pfs*2	ENST00000268712	NM_006311.3	1403	GTCAAATcc/cc																																																																															
NF1	4763	MSKCC	GRCh37	17	29528178	29528178	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0050008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	14	399	0	ENST00000358273.4:c.1185+1G>T		p.X395_splice	ENST00000358273	NM_001042492.2	395																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050021-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			244	37	303	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144146	11144146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050021-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	39	505	1	ENST00000344626.4:c.3727C>T	p.Arg1243Trp	p.R1243W	ENST00000344626	NM_003072.3	1243	Cgg/Tgg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468056	50468056	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050021-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			272	56	524	0	ENST00000331340.3:c.1291G>T	p.Glu431Ter	p.E431*	ENST00000331340	NM_006060.4	431	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599889	10599889	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050021-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			452	127	593	2	ENST00000171111.5:c.1687C>T	p.Gln563Ter	p.Q563*	ENST00000171111	NM_203500.1	563	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0050055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	252	467	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs483352695		P-0050055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	60	758	1	ENST00000269305.4:c.736A>T	p.Met246Leu	p.M246L	ENST00000269305	NM_001126112.2	246	Atg/Ttg																																																																															
IRF4	3662	MSKCC	GRCh37	6	394879	394879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	21	535	0	ENST00000380956.4:c.275C>T	p.Thr92Ile	p.T92I	ENST00000380956	NM_001195286.1	92	aCc/aTc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32944603	32944603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	32	558	0	ENST00000380152.3:c.8396G>T	p.Arg2799Ile	p.R2799I	ENST00000380152		2799	aGa/aTa																																																																															
MGA	23269	MSKCC	GRCh37	15	42041683	42041683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	38	499	0	ENST00000219905.7:c.5878C>T	p.Leu1960Phe	p.L1960F	ENST00000219905	NM_001164273.1	1960	Ctt/Ttt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303014	15303014	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	56	1031	0	ENST00000263388.2:c.436T>C	p.Cys146Arg	p.C146R	ENST00000263388	NM_000435.2	146	Tgc/Cgc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620644	52620644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	33	438	0	ENST00000394830.3:c.3109C>T	p.Arg1037Trp	p.R1037W	ENST00000394830	NM_018313.4	1037	Cgg/Tgg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55146605	55146605	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0050055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	13	540	0	ENST00000257290.5:c.2279C>G	p.Ser760Ter	p.S760*	ENST00000257290	NM_006206.4	760	tCa/tGa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467613	66467613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	42	371	0	ENST00000273854.3:c.656C>T	p.Ala219Val	p.A219V	ENST00000273854	NM_004439.5	219	gCt/gTt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683704	162683704	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0050055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	34	679	0	ENST00000366898.1:c.265A>T	p.Arg89Ter	p.R89*	ENST00000366898	NM_004562.2	89	Aga/Tga																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78727894	78727894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	317	674	1	ENST00000306801.3:c.739G>A	p.Glu247Lys	p.E247K	ENST00000306801	NM_020761.2	247	Gag/Aag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11210275	11210275	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	94	478	1	ENST00000361445.4:c.4478T>C	p.Leu1493Pro	p.L1493P	ENST00000361445	NM_004958.3	1493	cTc/cCc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175958612	175958612	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	128	328	0	ENST00000367669.3:c.1733A>G	p.His578Arg	p.H578R	ENST00000367669	NM_022457.5	578	cAc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0050086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	262	827	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099878	27099890	+	frameshift_variant	Frame_Shift_Del	DEL	AACGGCGGGATGG	AACGGCGGGATGG	-			P-0050086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	120	676	0	ENST00000324856.7:c.3757_3769del	p.Asn1253ValfsTer12	p.N1253Vfs*12	ENST00000324856	NM_006015.4	1253	AACGGCGGGATGGgt/gt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133800	55133800	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	57	554	0	ENST00000257290.5:c.1013A>C	p.Glu338Ala	p.E338A	ENST00000257290	NM_006206.4	338	gAg/gCg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	171	633	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107012	27107012	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	148	615	0	ENST00000324856.7:c.6623T>A	p.Phe2208Tyr	p.F2208Y	ENST00000324856	NM_006015.4	2208	tTc/tAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427431	49427431	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	213	702	0	ENST00000301067.7:c.11057C>G	p.Ser3686Cys	p.S3686C	ENST00000301067	NM_003482.3	3686	tCt/tGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448194	49448194	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	180	550	0	ENST00000301067.7:c.406T>C	p.Cys136Arg	p.C136R	ENST00000301067	NM_003482.3	136	Tgc/Cgc																																																																															
POLE	5426	MSKCC	GRCh37	12	133218321	133218321	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	65	674	0	ENST00000320574.5:c.5290del	p.Ala1764ProfsTer6	p.A1764Pfs*6	ENST00000320574	NM_006231.2	1764	Gcc/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984725	72984725	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	179	697	0	ENST00000268489.5:c.2859C>A	p.Phe953Leu	p.F953L	ENST00000268489	NM_006885.3	953	ttC/ttA																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099397	4099397	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	206	705	0	ENST00000262948.5:c.721G>C	p.Gly241Arg	p.G241R	ENST00000262948	NM_030662.3	241	Ggc/Cgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224504	36224504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	170	763	0	ENST00000222270.7:c.6966C>A	p.Ser2322Arg	p.S2322R	ENST00000222270	NM_014727.1	2322	agC/agA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0050098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	37	367	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0050098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	151	469	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	202	635	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0050098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	97	419	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112155042	112155042	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0050098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	91	360	0	ENST00000257430.4:c.1312+1G>A		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
FGF3	2248	MSKCC	GRCh37	11	69625281	69625281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35983315		P-0050098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	139	754	2	ENST00000334134.2:c.512G>A	p.Arg171His	p.R171H	ENST00000334134	NM_005247.2	171	cGc/cAc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798320	45798320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	155	700	1	ENST00000372115.3:c.574G>A	p.Glu192Lys	p.E192K	ENST00000372115	NM_001048171.1	192	Gag/Aag																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780289	9780289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1550	217	490	0	ENST00000377346.4:c.1459G>T	p.Ala487Ser	p.A487S	ENST00000377346	NM_005026.3	487	Gcc/Tcc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512329	149512329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1577	791	508	0	ENST00000261799.4:c.1111A>G	p.Asn371Asp	p.N371D	ENST00000261799	NM_002609.3	371	Aac/Gac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	95	508	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	28	349	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	108	1029	0	ENST00000269305.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000269305	NM_001126112.2	105	Ggc/Tgc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430792	181430792	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	44	1046	0	ENST00000325404.1:c.644C>A	p.Thr215Asn	p.T215N	ENST00000325404	NM_003106.3	215	aCc/aAc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71102882	71102882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	41	540	0	ENST00000318789.4:c.325C>T	p.Pro109Ser	p.P109S	ENST00000318789	NM_032682.5	109	Ccc/Tcc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877393	40877393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	48	764	0	ENST00000373198.4:c.2303G>T	p.Gly768Val	p.G768V	ENST00000373198	NM_133170.3	768	gGc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426736	49426771	+	inframe_deletion	In_Frame_Del	DEL	GCTGCTGCTGCTGCTGAAGTTGCTGTTGCTGTTGCA	GCTGCTGCTGCTGCTGAAGTTGCTGTTGCTGTTGCA	-			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	17	389	0	ENST00000301067.7:c.11717_11752del	p.Leu3906_Gln3917del	p.L3906_Q3917del	ENST00000301067	NM_003482.3	3906	cTGCAACAGCAACAGCAACTTCAGCAGCAGCAGCAGCag/cag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863392	57863392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	91	1030	2	ENST00000228682.2:c.1487G>A	p.Arg496His	p.R496H	ENST00000228682	NM_005269.2	496	cGc/cAc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777132	9777132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	54	1032	0	ENST00000377346.4:c.896C>A	p.Pro299Gln	p.P299Q	ENST00000377346	NM_005026.3	299	cCg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056188	27056188	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	40	716	0	ENST00000324856.7:c.1184A>G	p.Tyr395Cys	p.Y395C	ENST00000324856	NM_006015.4	395	tAt/tGt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176132092	176132092	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	51	504	0	ENST00000367669.3:c.675G>C	p.Trp225Cys	p.W225C	ENST00000367669	NM_022457.5	225	tgG/tgC																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683388	88683388	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	61	556	0	ENST00000372037.3:c.1511G>T	p.Trp504Leu	p.W504L	ENST00000372037	NM_004329.2	504	tGg/tTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18719911	18719911	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	19	474	0	ENST00000266497.5:c.3808A>T	p.Thr1270Ser	p.T1270S	ENST00000266497		1270	Aca/Tca																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434545	121434545	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	94	986	0	ENST00000257555.6:c.1309G>T	p.Gly437Cys	p.G437C	ENST00000257555		437	Ggc/Tgc																																																																															
ALK	238	MSKCC	GRCh37	2	29443580	29443580	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	96	828	0	ENST00000389048.3:c.3637C>A	p.Pro1213Thr	p.P1213T	ENST00000389048	NM_004304.4	1213	Cct/Act																																																																															
BARD1	580	MSKCC	GRCh37	2	215646161	215646161	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	40	547	0	ENST00000260947.4:c.437G>T	p.Trp146Leu	p.W146L	ENST00000260947	NM_000465.2	146	tGg/tTg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31388641	31388642	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	62	694	0	ENST00000328111.2:c.1908dup	p.Glu637Ter	p.E637*	ENST00000328111	NM_006892.3	636	att/aTtt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259271	89259271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	26	503	0	ENST00000336596.2:c.415C>A	p.Gln139Lys	p.Q139K	ENST00000336596	NM_005233.5	139	Cag/Aag																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317572	1317572	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	20	323	1				ENST00000381566																																																																																		
ATRX	546	MSKCC	GRCh37	X	76888785	76888785	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	29	580	0	ENST00000373344.5:c.5044G>C	p.Gly1682Arg	p.G1682R	ENST00000373344	NM_000489.3	1682	Ggc/Cgc																																																																															
ATRX	546	MSKCC	GRCh37	X	76952065	76952065	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	15	393	0	ENST00000373344.5:c.370G>C	p.Gly124Arg	p.G124R	ENST00000373344	NM_000489.3	124	Ggt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112175852	112175852	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	139	291	0	ENST00000257430.4:c.4561G>T	p.Glu1521Ter	p.E1521*	ENST00000257430	NM_000038.5	1521	Gaa/Taa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65321210	65321220	+	frameshift_variant	Frame_Shift_Del	DEL	AGCAGCGTTTT	AGCAGCGTTTT	-			P-0050123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	155	557	0	ENST00000342505.4:c.1620_1630del	p.Lys541ProfsTer15	p.K541Pfs*15	ENST00000342505	NM_002227.2	540	ctAAAACGCTGCTgc/ctgc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906938	32906938	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	201	478	0	ENST00000380152.3:c.1324del	p.Ser442GlnfsTer18	p.S442Qfs*18	ENST00000380152		441	acT/ac																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434569	99434569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	305	688	0	ENST00000268035.6:c.656G>A	p.Cys219Tyr	p.C219Y	ENST00000268035	NM_000875.3	219	tGt/tAt																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867697	45867697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	203	826	1	ENST00000391945.4:c.703G>A	p.Glu235Lys	p.E235K	ENST00000391945	NM_000400.3	235	Gag/Aag																																																																															
BCL6	604	MSKCC	GRCh37	3	187446992	187446992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	371	747	0	ENST00000232014.4:c.1201G>A	p.Gly401Ser	p.G401S	ENST00000232014	NM_001130845.1	401	Ggc/Agc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87549185	87549185	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	237	525	0	ENST00000277120.3:c.1742A>G	p.Asp581Gly	p.D581G	ENST00000277120		581	gAc/gGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55223522	55223522	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0050125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	313	827	0	ENST00000275493.2:c.890-1G>T		p.X297_splice	ENST00000275493	NM_005228.3	297																																																																																
EGFR	1956	MSKCC	GRCh37	7	55249005	55249007	+	missense_variant	Missense_Mutation	ONP	GCG	GCG	TCT			P-0050125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	331	814	1	ENST00000275493.2:c.2303_2305delinsTCT	p.Ser768_Val769delinsIleLeu	p.S768_V769delinsIL	ENST00000275493	NM_005228.3	768	aGCGtg/aTCTtg																																																																															
AR	367	MSKCC	GRCh37	X	66765076	66765076	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761416673		P-0050125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1187	97	887	1	ENST00000374690.3:c.88G>A	p.Val30Met	p.V30M	ENST00000374690	NM_000044.3	30	Gtg/Atg																																																																															
ATM	472	MSKCC	GRCh37	11	108173601	108173601	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	28	397	0	ENST00000278616.4:c.5341G>C	p.Asp1781His	p.D1781H	ENST00000278616	NM_000051.3	1781	Gac/Cac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248454	212248454	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	62	476	0	ENST00000342788.4:c.3813T>A	p.Asn1271Lys	p.N1271K	ENST00000342788	NM_005235.2	1271	aaT/aaA																																																																															
NF1	4763	MSKCC	GRCh37	17	29670099	29670099	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	344	624	0	ENST00000358273.4:c.7135G>T	p.Gly2379Ter	p.G2379*	ENST00000358273	NM_001042492.2	2379	Gga/Tga																																																																															
EP300	2033	MSKCC	GRCh37	22	41572489	41572489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	394	1072	0	ENST00000263253.7:c.5018G>A	p.Cys1673Tyr	p.C1673Y	ENST00000263253	NM_001429.3	1673	tGc/tAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056748	180056748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	428	1137	1	ENST00000261937.6:c.764G>T	p.Trp255Leu	p.W255L	ENST00000261937	NM_182925.4	255	tGg/tTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157511280	157511280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	79	661	0	ENST00000346085.5:c.3798G>A	p.Met1266Ile	p.M1266I	ENST00000346085	NM_020732.3	1266	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7579474	7579475	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0050125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	252	922	3	ENST00000269305.4:c.212_213delinsT	p.Pro71LeufsTer52	p.P71Lfs*52	ENST00000269305	NM_001126112.2	71	cCC/cT																																																																															
ARAF	369	MSKCC	GRCh37	X	47430757	47430758	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	A			P-0050125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	279	1001	0	ENST00000377045.4:c.1722_1723delinsA	p.Lys576ArgfsTer?	p.K576Rfs*?	ENST00000377045	NM_001654.4	574	ctCCcc/ctAcc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0050131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	120	499	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115262206	115262206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	105	374	1	ENST00000438362.2:c.2348G>A	p.Arg783Gln	p.R783Q	ENST00000438362	NM_001242891.1	783	cGa/cAa																																																																															
CD276	80381	MSKCC	GRCh37	15	73995386	73995386	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs184115783		P-0050131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	130	421	2	ENST00000318443.5:c.692C>T	p.Ala231Val	p.A231V	ENST00000318443	NM_001024736.1	231	gCg/gTg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871880	12871880	+	stop_lost	Nonstop_Mutation	SNP	A	A	C			P-0050131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	60	182	0	ENST00000228872.4:c.597A>C	p.Ter199TyrextTer60	p.*199Yext*60	ENST00000228872	NM_004064.3	199	taA/taC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859909	151859918	+	frameshift_variant	Frame_Shift_Del	DEL	ATCCCGGATA	ATCCCGGATA	-			P-0050131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	113	424	0	ENST00000262189.6:c.10744_10753del	p.Tyr3582GlnfsTer12	p.Y3582Qfs*12	ENST00000262189	NM_170606.2	3582	TATCCGGGATca/ca																																																																															
NRAS	4893	MSKCC	GRCh37	1	115252348	115252348	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	85	245	0	ENST00000369535.4:c.292G>C	p.Glu98Gln	p.E98Q	ENST00000369535	NM_002524.4	98	Gag/Cag																																																																															
RET	5979	MSKCC	GRCh37	10	43609054	43609054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	209	644	2	ENST00000355710.3:c.1810G>A	p.Ala604Thr	p.A604T	ENST00000355710	NM_020975.4	604	Gct/Act																																																																															
ATM	472	MSKCC	GRCh37	11	108224493	108224493	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	66	240	0	ENST00000278616.4:c.8672G>T	p.Gly2891Val	p.G2891V	ENST00000278616	NM_000051.3	2891	gGt/gTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443611	49443612	+	stop_gained	Nonsense_Mutation	DNP	CA	CA	AC			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	492	647	0	ENST00000301067.7:c.3759_3760delinsGT	p.Asp1253_Glu1254delinsGluTer	p.D1253_E1254delinsE*	ENST00000301067	NM_003482.3	1253	gaTGag/gaGTag																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50484291	50484291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	466	600	0	ENST00000394963.4:c.1051C>T	p.Arg351Cys	p.R351C	ENST00000394963	NM_003076.4	351	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578440	7578440	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	369	618	0	ENST00000269305.4:c.490A>T	p.Lys164Ter	p.K164*	ENST00000269305	NM_001126112.2	164	Aag/Tag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627319	37627319	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142798057		P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	280	500	2	ENST00000447079.4:c.1234G>A	p.Ala412Thr	p.A412T	ENST00000447079	NM_015083.1	412	Gca/Aca																																																																															
INSR	3643	MSKCC	GRCh37	19	7119553	7119553	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	279	515	0	ENST00000302850.5:c.3701A>C	p.Glu1234Ala	p.E1234A	ENST00000302850	NM_000208.2	1234	gAa/gCa																																																																															
CCNE1	898	MSKCC	GRCh37	19	30314606	30314606	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	135	526	0	ENST00000262643.3:c.1155G>T	p.Arg385Ser	p.R385S	ENST00000262643	NM_001238.2	385	agG/agT																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259156	89259156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	134	365	0	ENST00000336596.2:c.300G>T	p.Lys100Asn	p.K100N	ENST00000336596	NM_005233.5	100	aaG/aaT																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149439282	149439282	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	312	509	0	ENST00000286301.3:c.2113G>T	p.Glu705Ter	p.E705*	ENST00000286301	NM_005211.3	705	Gag/Tag																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38178589	38178589	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	160	378	0	ENST00000317025.8:c.1809+1G>T		p.X603_splice	ENST00000317025	NM_023034.1	603																																																																																
PREX2	80243	MSKCC	GRCh37	8	69050683	69050683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	76	389	0	ENST00000288368.4:c.4018G>T	p.Val1340Phe	p.V1340F	ENST00000288368	NM_024870.2	1340	Gtt/Ttt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974799	21974799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	192	244	0	ENST00000304494.5:c.28G>T	p.Glu10Ter	p.E10*	ENST00000304494	NM_000077.4	10	Gag/Tag																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781056	135781056	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	282	635	1	ENST00000298552.3:c.1909G>T	p.Glu637Ter	p.E637*	ENST00000298552	NM_001162426.1	637	Gaa/Taa																																																																															
ATRX	546	MSKCC	GRCh37	X	76778861	76778861	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	74	429	0	ENST00000373344.5:c.6718C>G	p.Leu2240Val	p.L2240V	ENST00000373344	NM_000489.3	2240	Ctc/Gtc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519930		P-0050134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	98	423	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	104	503	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115692	8115710	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTTGTTTAGATTAACAGA	CTTTGTTTAGATTAACAGA	-			P-0050134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	35	195	0	ENST00000346208.3:c.1048-9_1057del		p.X350_splice	ENST00000346208		350																																																																																
CBFB	865	MSKCC	GRCh37	16	67100583	67100583	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0050134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	135	378	0	ENST00000412916.2:c.283-2A>T		p.X95_splice	ENST00000412916		95																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56489566	56489566	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	107	560	0	ENST00000267101.3:c.2031G>C	p.Met677Ile	p.M677I	ENST00000267101	NM_001982.3	677	atG/atC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577577	7577577	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	279	603	0	ENST00000269305.4:c.704del	p.Asn235ThrfsTer12	p.N235Tfs*12	ENST00000269305	NM_001126112.2	235	aAc/ac																																																																															
TSC2	7249	MSKCC	GRCh37	16	2126112	2126112	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	140	757	0	ENST00000219476.3:c.2683A>G	p.Met895Val	p.M895V	ENST00000219476	NM_000548.3	895	Atg/Gtg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42840447	42840447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	118	556	0	ENST00000398585.3:c.1301T>C	p.Leu434Pro	p.L434P	ENST00000398585	NM_001135099.1	434	cTg/cCg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285743	87285743	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	166	686	0	ENST00000277120.3:c.80G>T	p.Arg27Met	p.R27M	ENST00000277120		27	aGg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0050153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	29	484	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	18	373	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782329		P-0050168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	175	571	0	ENST00000269305.4:c.746G>C	p.Arg249Thr	p.R249T	ENST00000269305	NM_001126112.2	249	aGg/aCg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604715	48604715	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	40	341	0	ENST00000342988.3:c.1537T>C	p.Tyr513His	p.Y513H	ENST00000342988	NM_005359.5	513	Tac/Cac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	138	366	0	ENST00000304494.5:c.132C>A	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/taA																																																																															
BTK	695	MSKCC	GRCh37	X	100608963	100608963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	34	424	0	ENST00000308731.7:c.1645G>A	p.Asp549Asn	p.D549N	ENST00000308731	NM_000061.2	549	Gat/Aat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106852	27106853	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCAG			P-0050168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	125	531	0	ENST00000324856.7:c.6465_6468dup	p.Asp2157GlnfsTer2	p.D2157Qfs*2	ENST00000324856	NM_006015.4	2155	ctc/cTCAGtc																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778179	27778179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	64	629	0	ENST00000369163.2:c.328C>A	p.Leu110Met	p.L110M	ENST00000369163	NM_003536.2	110	Ctg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0050169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	18	558	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165207	47165207	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	48	294	0	ENST00000409792.3:c.919del	p.Ser307LeufsTer33	p.S307Lfs*33	ENST00000409792	NM_014159.6	307	Tct/ct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0050172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	70	423	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	137	739	0	ENST00000269305.4:c.332T>A	p.Leu111Gln	p.L111Q	ENST00000269305	NM_001126112.2	111	cTg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	285	371	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0050175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	758	611	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	97	207	0	ENST00000257430.4:c.3944C>A	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250883	153250883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	127	293	0	ENST00000281708.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000281708	NM_033632.3	393	Cga/Tga																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755782	57755782	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	244	450	0	ENST00000274289.3:c.5A>G	p.Glu2Gly	p.E2G	ENST00000274289	NM_006622.3	2	gAg/gGg																																																																															
APC	324	MSKCC	GRCh37	5	112174018	112174019	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	132	239	0	ENST00000257430.4:c.2728dup	p.Thr910AsnfsTer2	p.T910Nfs*2	ENST00000257430	NM_000038.5	909	-/A																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0050186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	120	542	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0050186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	175	825	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056421	180056421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	54	638	0	ENST00000261937.6:c.823C>T	p.Arg275Trp	p.R275W	ENST00000261937	NM_182925.4	275	Cgg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41420011	41420011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	61	599	1	ENST00000373198.4:c.310G>A	p.Asp104Asn	p.D104N	ENST00000373198	NM_133170.3	104	Gac/Aac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492756	56492757	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0050186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	109	523	0	ENST00000407977.2:c.182_183del	p.Leu61GlnfsTer13	p.L61Qfs*13	ENST00000407977		61	cTG/c																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39609362	39609362	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	90	314	0	ENST00000262039.4:c.1664T>G	p.Leu555Arg	p.L555R	ENST00000262039	NM_002647.2	555	cTa/cGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398283	25398285	+	missense_variant	Missense_Mutation	ONP	ACC	ACC	CCG			P-0050186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	79	376	0	ENST00000256078.4:c.34_36delinsCGG	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	GGT/CGG																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2194560	2194560	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	42	484	0	ENST00000398665.3:c.635A>G	p.Lys212Arg	p.K212R	ENST00000398665	NM_032482.2	212	aAg/aGg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	110	452	3	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3801767	3801767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	154	607	0	ENST00000262367.5:c.3739G>A	p.Glu1247Lys	p.E1247K	ENST00000262367	NM_004380.2	1247	Gag/Aag																																																																															
AR	367	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	130	267	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	193	608	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	188	359	2	ENST00000342505.4:c.1016delA	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																															
NSD1	64324	MSKCC	GRCh37	5	176673750	176673750	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	125	422	0	ENST00000439151.2:c.4455del	p.Val1486Ter	p.V1486*	ENST00000439151	NM_022455.4	1484	Aaa/aa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353819	15353819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	106	454	2	ENST00000263377.2:c.3061delC	p.His1021IlefsTer47	p.H1021Ifs*47	ENST00000263377	NM_058243.2	1021	Cat/at																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139418405	139418405	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1286309175		P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1245	538	1014	0	ENST00000277541.6:c.167G>A	p.Arg56Gln	p.R56Q	ENST00000277541	NM_017617.3	56	cGa/cAa																																																																															
AR	367	MSKCC	GRCh37	X	66931504	66931504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	204	321	0	ENST00000374690.3:c.2146G>A	p.Val716Met	p.V716M	ENST00000374690	NM_000044.3	716	Gtg/Atg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096044	11096044	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	272	987	0	ENST00000344626.4:c.321del	p.Pro109ArgfsTer194	p.P109Rfs*194	ENST00000344626	NM_003072.3	106	atG/at																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542110	187542110	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	121	439	1	ENST00000441802.2:c.5630del	p.Pro1877LeufsTer20	p.P1877Lfs*20	ENST00000441802	NM_005245.3	1877	cCt/ct																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499363	89499363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	278	459	2	ENST00000336596.2:c.2538delC	p.Met847TrpfsTer10	p.M847Wfs*10	ENST00000336596	NM_005233.5	845	Ccc/cc																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226253418	226253418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	71	78	0	ENST00000366813.1:c.190C>T	p.Arg64Cys	p.R64C	ENST00000366813		64	Cgc/Tgc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716329	52716329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	22	722	0	ENST00000322088.6:c.773G>A	p.Arg258His	p.R258H	ENST00000322088	NM_014225.5	258	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107136	27107137	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	384	637	0	ENST00000324856.7:c.6749_6750del	p.Glu2250ValfsTer27	p.E2250Vfs*27	ENST00000324856	NM_006015.4	2249	tcAGag/tcag																																																																															
EP300	2033	MSKCC	GRCh37	22	41551083	41551083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	317	560	0	ENST00000263253.7:c.3227G>A	p.Arg1076His	p.R1076H	ENST00000263253	NM_001429.3	1076	cGt/cAt																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271224	26271224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	123	568	0	ENST00000305910.3:c.389G>A	p.Arg130His	p.R130H	ENST00000305910	NM_003534.2	130	cGc/cAc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	358	578	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	113	910	4	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
AKT1	207	MSKCC	GRCh37	14	105239899	105239899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	206	745	3	ENST00000349310.3:c.721C>T	p.Arg241Trp	p.R241W	ENST00000349310	NM_001014432.1	241	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	533	1082	0	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300040	137300040	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1247	458	990	0	ENST00000481739.1:c.331del	p.Leu111TrpfsTer57	p.L111Wfs*57	ENST00000481739	NM_002957.4	109	Ccc/cc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38614463	38614463	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	128	424	0	ENST00000299084.4:c.234del	p.Asp79ThrfsTer42	p.D79Tfs*42	ENST00000299084	NM_152594.2	77	Aaa/aa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468307	120468307	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	223	681	0	ENST00000256646.2:c.4132T>C	p.Cys1378Arg	p.C1378R	ENST00000256646	NM_024408.3	1378	Tgt/Cgt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561376	9561376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	282	585	0	ENST00000353224.5:c.406G>A	p.Asp136Asn	p.D136N	ENST00000353224	NM_177990.2	136	Gat/Aat																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223858	36223858	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	272	1110	6	ENST00000222270.7:c.6413del	p.Pro2138ArgfsTer15	p.P2138Rfs*15	ENST00000222270	NM_014727.1	2136	ctC/ct																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412297	139412297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	508	1036	0	ENST00000277541.6:c.1348G>A	p.Glu450Lys	p.E450K	ENST00000277541	NM_017617.3	450	Gag/Aag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118365075	118365075	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	142	458	0	ENST00000534358.1:c.5251A>T	p.Lys1751Ter	p.K1751*	ENST00000534358	NM_005933.3	1751	Aaa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	263	471	16	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453399	40453399	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs759027671		P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	313	938	12	ENST00000345506.4:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000345506	NM_003152.3	366	Ccc/cc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	402268	402268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	64	589	0	ENST00000399788.2:c.4523G>A	p.Arg1508Gln	p.R1508Q	ENST00000399788	NM_001042603.1	1508	cGg/cAg																																																																															
TET2	54790	MSKCC	GRCh37	4	106157790	106157790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	92	303	0	ENST00000380013.4:c.2691G>T	p.Gln897His	p.Q897H	ENST00000380013	NM_001127208.2	897	caG/caT																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223485	53223485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	449	398	0	ENST00000375401.3:c.3874G>A	p.Ala1292Thr	p.A1292T	ENST00000375401	NM_004187.3	1292	Gcc/Acc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968244	2968244	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1161484391		P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	244	927	0	ENST00000396946.4:c.1742C>T	p.Ala581Val	p.A581V	ENST00000396946	NM_032415.4	581	gCg/gTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2180739	2180741	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	191	716	0	ENST00000398665.3:c.112_114del	p.Ile38del	p.I38del	ENST00000398665	NM_032482.2	37	ATC/-																																																																															
JAK1	3716	MSKCC	GRCh37	1	65307276	65307279	+	frameshift_variant	Frame_Shift_Del	DEL	TCTC	TCTC	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	88	337	0	ENST00000342505.4:c.2409_2412del	p.Glu803AspfsTer10	p.E803Dfs*10	ENST00000342505	NM_002227.2	803	gaGAGA/ga																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348796	11348796	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	83	330	0	ENST00000332029.2:c.540G>C	p.Gln180His	p.Q180H	ENST00000332029	NM_003745.1	180	caG/caC																																																																															
UPF1	5976	MSKCC	GRCh37	19	18961631	18961631	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1339234477		P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	84	800	2	ENST00000262803.5:c.764G>A	p.Arg255His	p.R255H	ENST00000262803	NM_002911.3	255	cGc/cAc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294672	1294672	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	57	614	4	ENST00000310581.5:c.329del	p.Gly110AlafsTer18	p.G110Afs*18	ENST00000310581	NM_198253.2	110	gGc/gc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980496	1980496	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151213547		P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	228	877	0	ENST00000382891.5:c.3958C>T	p.Arg1320Trp	p.R1320W	ENST00000382891	NM_133335.3	1320	Cgg/Tgg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786008	135786008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1225	229	711	1	ENST00000298552.3:c.1213G>A	p.Asp405Asn	p.D405N	ENST00000298552	NM_001162426.1	405	Gac/Aac																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807188	1807188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	460	932	1	ENST00000260795.2:c.1519G>A	p.Val507Met	p.V507M	ENST00000260795		507	Gtg/Atg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202706	16202707	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	121	404	0	ENST00000375759.3:c.416dup	p.Asn139LysfsTer7	p.N139Kfs*7	ENST00000375759	NM_015001.2	138	-/A																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176118198	176118198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	63	224	0	ENST00000367669.3:c.775G>T	p.Ala259Ser	p.A259S	ENST00000367669	NM_022457.5	259	Gcc/Tcc																																																																															
RET	5979	MSKCC	GRCh37	10	43600417	43600417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	365	645	0	ENST00000355710.3:c.643C>T	p.Arg215Cys	p.R215C	ENST00000355710	NM_020975.4	215	Cgc/Tgc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279612	123279612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	188	652	1	ENST00000358487.5:c.820G>A	p.Val274Ile	p.V274I	ENST00000358487	NM_000141.4	274	Gta/Ata																																																																															
KDM5A	5927	MSKCC	GRCh37	12	404783	404783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	78	505	0	ENST00000399788.2:c.4411G>A	p.Ala1471Thr	p.A1471T	ENST00000399788	NM_001042603.1	1471	Gcc/Acc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	406282	406282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	265	542	0	ENST00000399788.2:c.4159G>A	p.Val1387Met	p.V1387M	ENST00000399788	NM_001042603.1	1387	Gtg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427686	49427691	+	inframe_deletion	In_Frame_Del	DEL	TGCTGC	TGCTGC	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	194	707	0	ENST00000301067.7:c.10797_10802del	p.Gln3611_Gln3612del	p.Q3611_Q3612del	ENST00000301067	NM_003482.3	3599	caGCAGCAa/caa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562352	21562352	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	242	842	0	ENST00000382592.4:c.1567C>A	p.Leu523Met	p.L523M	ENST00000382592	NM_014572.2	523	Ctg/Atg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563029	21563029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	257	917	0	ENST00000382592.4:c.890C>T	p.Pro297Leu	p.P297L	ENST00000382592	NM_014572.2	297	cCg/cTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900640	32900640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	114	435	0	ENST00000380152.3:c.521G>A	p.Arg174His	p.R174H	ENST00000380152		174	cGt/cAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914138	32914138	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	117	477	1	ENST00000380152.3:c.5650del	p.Ile1884PhefsTer25	p.I1884Ffs*25	ENST00000380152		1882	tcA/tc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987126	36987127	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	524	849	0	ENST00000354822.5:c.562dup	p.Ser188LysfsTer251	p.S188Kfs*251	ENST00000354822	NM_001079668.2	188	agc/aAgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42034864	42034864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	144	532	0	ENST00000219905.7:c.4706G>A	p.Ser1569Asn	p.S1569N	ENST00000219905	NM_001164273.1	1569	aGt/aAt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244081	41244081	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	62	550	0	ENST00000357654.3:c.3467A>G	p.Asp1156Gly	p.D1156G	ENST00000357654	NM_007294.3	1156	gAt/gGt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56400718	56400718	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	40	346	0	ENST00000348428.3:c.1312A>C	p.Asn438His	p.N438H	ENST00000348428	NM_006785.3	438	Aat/Cat																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4110605	4110605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	448	847	0	ENST00000262948.5:c.352G>A	p.Glu118Lys	p.E118K	ENST00000262948	NM_030662.3	118	Gag/Aag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223254	5223254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	237	939	1	ENST00000357368.4:c.2549C>T	p.Ala850Val	p.A850V	ENST00000357368	NM_002850.3	850	gCa/gTa																																																																															
ALK	238	MSKCC	GRCh37	2	30143085	30143085	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	483	950	0	ENST00000389048.3:c.441G>T	p.Glu147Asp	p.E147D	ENST00000389048	NM_004304.4	147	gaG/gaT																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719800	190719800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	61	286	0	ENST00000441310.2:c.1802C>T	p.Ala601Val	p.A601V	ENST00000441310	NM_000534.4	601	gCa/gTa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538275	9538275	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	277	460	1	ENST00000353224.5:c.1723C>A	p.Leu575Ile	p.L575I	ENST00000353224	NM_177990.2	575	Ctc/Atc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62319054	62319054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	542	1102	0	ENST00000508582.2:c.1484G>A	p.Gly495Asp	p.G495D	ENST00000508582		495	gGc/gAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41574058	41574058	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	63	647	0	ENST00000263253.7:c.6343C>T	p.Pro2115Ser	p.P2115S	ENST00000263253	NM_001429.3	2115	Cca/Tca																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266951	41266951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	120	493	2	ENST00000349496.5:c.622G>A	p.Val208Ile	p.V208I	ENST00000349496	NM_001904.3	208	Gta/Ata																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72893531	72893531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	23	511	0	ENST00000325599.8:c.187G>T	p.Gly63Trp	p.G63W	ENST00000325599	NM_018130.2	63	Ggg/Tgg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119634960	119634960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	72	299	0	ENST00000316626.5:c.539G>A	p.Arg180Gln	p.R180Q	ENST00000316626		180	cGg/cAg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435666	149435667	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	84	790	0	ENST00000286301.3:c.2476_2477del	p.Ser826HisfsTer3	p.S826Hfs*3	ENST00000286301	NM_005211.3	826	AGc/c																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271596	26271596	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	195	388	0	ENST00000305910.3:c.17A>G	p.Gln6Arg	p.Q6R	ENST00000305910	NM_003534.2	6	cAg/cGg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680389	30680389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	231	611	2	ENST00000376406.3:c.1330C>T	p.Arg444Ter	p.R444*	ENST00000376406	NM_014641.2	444	Cga/Tga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169923	32169923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	257	966	0	ENST00000375023.3:c.3685T>C	p.Cys1229Arg	p.C1229R	ENST00000375023	NM_004557.3	1229	Tgc/Cgc																																																																															
CDK6	1021	MSKCC	GRCh37	7	92244576	92244576	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	106	394	0	ENST00000265734.4:c.859A>G	p.Lys287Glu	p.K287E	ENST00000265734	NM_001259.6	287	Aaa/Gaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151880172	151880172	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	27	442	0	ENST00000262189.6:c.5152del	p.Arg1718GlyfsTer23	p.R1718Gfs*23	ENST00000262189	NM_170606.2	1718	Agg/gg																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194806	29194806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	275	981	1	ENST00000240100.2:c.922G>A	p.Glu308Lys	p.E308K	ENST00000240100	NM_001394.6	308	Gag/Aag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740834	145740834	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	83	837	0	ENST00000428558.2:c.1266G>T	p.Glu422Asp	p.E422D	ENST00000428558	NM_004260.3	422	gaG/gaT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970979	21970979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	104	762	0	ENST00000304494.5:c.379G>A	p.Ala127Thr	p.A127T	ENST00000304494	NM_000077.4	127	Gca/Aca																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239064	98239064	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	97	458	0	ENST00000331920.6:c.1579C>T	p.Gln527Ter	p.Q527*	ENST00000331920	NM_000264.3	527	Cag/Tag																																																																															
BTK	695	MSKCC	GRCh37	X	100611079	100611079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	416	419	0	ENST00000308731.7:c.1527G>A	p.Met509Ile	p.M509I	ENST00000308731	NM_000061.2	509	atG/atA																																																																															
POLE	5426	MSKCC	GRCh37	12	133238113	133238113	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0050198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	52	399	0	ENST00000320574.5:c.2864G>A	p.Arg955Lys	p.R955K	ENST00000320574	NM_006231.2	955	aGg/aAg																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023107	33023107	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	85	527	0	ENST00000300177.4:c.216G>C	p.Glu72Asp	p.E72D	ENST00000300177	NM_001191322.1	72	gaG/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578371	7578371	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs776167460		P-0050198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	17	649	0	ENST00000269305.4:c.559G>A	p.Gly187Ser	p.G187S	ENST00000269305	NM_001126112.2	187	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	25	864	2	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0050198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	13	518	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31495469	31495469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	95	465	0	ENST00000344624.3:c.1679C>T	p.Pro560Leu	p.P560L	ENST00000344624		560	cCc/cTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	-			P-0050198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	103	472	0	ENST00000275493.2:c.2237_2251del	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gca																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006898	47006898	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0050198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	179	719	0	ENST00000329236.7:c.17+1G>T		p.X6_splice	ENST00000329236	NM_001204466.1	6																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27100069	27100070	+	splice_acceptor_variant	Splice_Site	DNP	AG	AG	TT			P-0050198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	37	699	0	ENST00000324856.7:c.3867-2_3867-1delinsTT		p.X1289_splice	ENST00000324856	NM_006015.4	1289																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	29	394	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	48	626	0	ENST00000269305.4:c.770T>G	p.Leu257Arg	p.L257R	ENST00000269305	NM_001126112.2	257	cTg/cGg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231286	46231286	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	22	327	0	ENST00000334344.6:c.1126G>T	p.Glu376Ter	p.E376*	ENST00000334344	NM_152641.2	376	Gaa/Taa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56494933	56494933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	50	600	0	ENST00000267101.3:c.3290C>T	p.Ser1097Leu	p.S1097L	ENST00000267101	NM_001982.3	1097	tCa/tTa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782233	56782233	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	50	538	0	ENST00000308159.5:c.74A>G	p.Glu25Gly	p.E25G	ENST00000308159	NM_014669.4	25	gAg/gGg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30648394	30648395	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0050199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	29	564	0	ENST00000359013.4:c.23dup	p.Leu9ProfsTer33	p.L9Pfs*33	ENST00000359013	NM_001024847.2	7	agg/aGgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	234	336	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2494603	2494603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	110	562	2	ENST00000355716.4:c.743C>T	p.Ala248Val	p.A248V	ENST00000355716	NM_003820.2	248	gCa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0050205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	87	340	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RAC1	5879	MSKCC	GRCh37	7	6431650	6431650	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050214-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			621	92	528	0	ENST00000356142.4:c.203G>C	p.Arg68Pro	p.R68P	ENST00000356142	NM_018890.3	68	cGc/cCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0050216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			592	857	457	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0050216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			616	259	913	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302894	15302894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			649	229	1070	0	ENST00000263388.2:c.556C>A	p.Pro186Thr	p.P186T	ENST00000263388	NM_000435.2	186	Cca/Aca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211897	36211897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			798	225	887	0	ENST00000222270.7:c.1648G>A	p.Asp550Asn	p.D550N	ENST00000222270	NM_014727.1	550	Gac/Aac																																																																															
RAD50	10111	MSKCC	GRCh37	5	131911560	131911560	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			497	217	390	0	ENST00000265335.6:c.305G>T	p.Cys102Phe	p.C102F	ENST00000265335		102	tGt/tTt																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137524762	137524768	+	protein_altering_variant	In_Frame_Del	DEL	CTAACTG	CTAACTG	T			P-0050216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			622	105	416	0	ENST00000367739.4:c.601_607delinsA	p.Gln201_Ala203delinsThr	p.Q201_A203delinsT	ENST00000367739	NM_000416.2	201	CAGTTAGcg/Acg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0050230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	20	280	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0050230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	178	419	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
ROS1	6098	MSKCC	GRCh37	6	117642470	117642470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	85	588	0	ENST00000368508.3:c.5729G>A	p.Arg1910Gln	p.R1910Q	ENST00000368508	NM_002944.2	1910	cGa/cAa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134306	11134306	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0050230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	142	507	0	ENST00000344626.4:c.2972A>C	p.Lys991Thr	p.K991T	ENST00000344626	NM_003072.3	991	aAg/aCg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625302	69625302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	199	886	2	ENST00000334134.2:c.491G>A	p.Arg164His	p.R164H	ENST00000334134	NM_005247.2	164	cGc/cAc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244882	41244882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	120	467	0	ENST00000357654.3:c.2666C>T	p.Ser889Phe	p.S889F	ENST00000357654	NM_007294.3	889	tCt/tTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152079	11152080	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0050230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	39	500	0	ENST00000344626.4:c.4271dup	p.Thr1425AspfsTer30	p.T1425Dfs*30	ENST00000344626	NM_003072.3	1423	acc/aCcc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0050240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	44	498	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
APC	324	MSKCC	GRCh37	5	112175903	112175903	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	10	212	0	ENST00000257430.4:c.4612G>T	p.Glu1538Ter	p.E1538*	ENST00000257430	NM_000038.5	1538	Gaa/Taa																																																																															
SMO	6608	MSKCC	GRCh37	7	128845140	128845140	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	110	927	0	ENST00000249373.3:c.634G>C	p.Gly212Arg	p.G212R	ENST00000249373	NM_005631.4	212	Ggc/Cgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242482	+	protein_altering_variant	In_Frame_Del	DEL	GGAATTAAGAGAAGCAAC	GGAATTAAGAGAAGCAAC	AAT			P-0050241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	139	369	1	ENST00000275493.2:c.2235_2252delinsAAT	p.Glu746_Thr751delinsIle	p.E746_T751delinsI	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCAACa/aaAATa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921347	178921347	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	84	300	0	ENST00000263967.3:c.829A>C	p.Ile277Leu	p.I277L	ENST00000263967	NM_006218.2	277	Ata/Cta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577157	7577157	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0050248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	67	518	0	ENST00000269305.4:c.783-2A>C		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
NF1	4763	MSKCC	GRCh37	17	29665158	29665158	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0050248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	53	371	0	ENST00000358273.4:c.6819+1G>T		p.X2273_splice	ENST00000358273	NM_001042492.2	2273																																																																																
RASA1	5921	MSKCC	GRCh37	5	86672363	86672367	+	frameshift_variant	Frame_Shift_Del	DEL	AGTAC	AGTAC	-			P-0050248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	30	255	0	ENST00000274376.6:c.2168_2172del	p.Tyr723Ter	p.Y723*	ENST00000274376	NM_002890.2	722	gAGTAC/g																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170180	32170180	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	50	911	0	ENST00000375023.3:c.3428A>T	p.Asn1143Ile	p.N1143I	ENST00000375023	NM_004557.3	1143	aAt/aTt																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123480607	123480607	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	44	576	0	ENST00000371139.4:c.115G>T	p.Gly39Cys	p.G39C	ENST00000371139	NM_001114937.2	39	Ggc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175476	112175476	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	71	357	0	ENST00000257430.4:c.4188del	p.Phe1396LeufsTer19	p.F1396Lfs*19	ENST00000257430	NM_000038.5	1395	agT/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs587782289		P-0050254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	198	623	0	ENST00000269305.4:c.706T>A	p.Tyr236Asn	p.Y236N	ENST00000269305	NM_001126112.2	236	Tac/Aac																																																																															
MCL1	4170	MSKCC	GRCh37	1	150552004	150552004	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0050254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	61	567	0	ENST00000369026.2:c.3G>A	p.Met1?	p.M1?	ENST00000369026	NM_021960.4	1	atG/atA																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473704	67473704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	147	704	0	ENST00000327367.4:c.784G>T	p.Asp262Tyr	p.D262Y	ENST00000327367	NM_005902.3	262	Gac/Tac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251773	212251773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	44	398	0	ENST00000342788.4:c.3286G>A	p.Gly1096Ser	p.G1096S	ENST00000342788	NM_005235.2	1096	Ggt/Agt																																																																															
SMO	6608	MSKCC	GRCh37	7	128848652	128848652	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	67	803	0	ENST00000249373.3:c.1317G>C	p.Glu439Asp	p.E439D	ENST00000249373	NM_005631.4	439	gaG/gaC																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981217	201981217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	195	1074	0	ENST00000359651.3:c.296G>A	p.Gly99Asp	p.G99D	ENST00000359651		99	gGc/gAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0050257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	55	705	2	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	-			P-0050257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	129	439	0	ENST00000275493.2:c.2237_2251del	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0050258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	143	406	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155700	56155701	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0050258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	110	396	0	ENST00000399503.3:c.793_794del	p.Glu265IlefsTer35	p.E265Ifs*35	ENST00000399503	NM_005921.1	264	tcAGaa/tcaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	100	438	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112116486	112116486	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0050259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	21	236	0	ENST00000257430.4:c.532-1G>A		p.X178_splice	ENST00000257430	NM_000038.5	178																																																																																
FGFR1	2260	MSKCC	GRCh37	8	38271456	38271456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	52	1027	3	ENST00000425967.3:c.2365G>A	p.Val789Met	p.V789M	ENST00000425967	NM_001174067.1	789	Gtg/Atg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0050261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	127	464	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935496	13935497	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0050261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	128	352	0	ENST00000405192.2:c.1359_1360del	p.Tyr454LeufsTer62	p.Y454Lfs*62	ENST00000405192	NM_001163147.1	453	gtGTat/gtat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0050264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	319	371	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0050264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	134	307	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0050264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	143	316	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	260	649	0	ENST00000269305.4:c.568C>A	p.Pro190Thr	p.P190T	ENST00000269305	NM_001126112.2	190	Cct/Act																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	181	442	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	394	1088	1	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	113	427	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	188	753	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120497754	120497754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	172	608	0	ENST00000256646.2:c.2128G>A	p.Glu710Lys	p.E710K	ENST00000256646	NM_024408.3	710	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524714	187524714	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs192691397		P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	79	815	1	ENST00000441802.2:c.10966G>A	p.Val3656Ile	p.V3656I	ENST00000441802	NM_005245.3	3656	Gtt/Att																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	29	362	1	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	184	435	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	20	364	1	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226423	2226423	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	362	1257	1	ENST00000398665.3:c.3907del	p.Ala1303LeufsTer24	p.A1303Lfs*24	ENST00000398665	NM_032482.2	1301	tcG/tc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	14	261	0	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7579584	7579585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	221	764	0	ENST00000269305.4:c.102dupC	p.Pro36AlafsTer7	p.P36Afs*7	ENST00000269305	NM_001126112.2	34	-/C																																																																															
CIC	23152	MSKCC	GRCh37	19	42799098	42799098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1199	81	1170	1	ENST00000575354.2:c.4586delC	p.Pro1529LeufsTer91	p.P1529Lfs*91	ENST00000575354	NM_015125.3	1528	Ccc/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	179	825	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs80357522		P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	49	645	1	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	116	442	10	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	79	927	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661836	227661836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	78	970	0	ENST00000305123.5:c.1619C>T	p.Pro540Leu	p.P540L	ENST00000305123	NM_005544.2	540	cCg/cTg																																																																															
B2M	567	MSKCC	GRCh37	15	45007688	45007688	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	97	413	1	ENST00000558401.1:c.135C>A	p.Cys45Ter	p.C45*	ENST00000558401	NM_004048.2	45	tgC/tgA																																																																															
BLM	641	MSKCC	GRCh37	15	91310208	91310208	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs747341586		P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	25	273	0	ENST00000355112.3:c.2268del	p.Asp757ThrfsTer4	p.D757Tfs*4	ENST00000355112	NM_000057.2	754	tcA/tc																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793677	89793677	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	19	435	2	ENST00000336032.3:c.752del	p.Lys251SerfsTer14	p.K251Sfs*14	ENST00000336032	NM_006813.2	249	gAa/ga																																																																															
E2F3	1871	MSKCC	GRCh37	6	20481454	20481455	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	37	313	0	ENST00000346618.3:c.529dup	p.Thr177AsnfsTer4	p.T177Nfs*4	ENST00000346618	NM_001949.4	175	gaa/gAaa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163554	32163554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	185	955	2	ENST00000375023.3:c.5672del	p.Gly1891AlafsTer13	p.G1891Afs*13	ENST00000375023	NM_004557.3	1891	gGc/gc																																																																															
PIM1	5292	MSKCC	GRCh37	6	37138563	37138563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	239	893	1	ENST00000373509.5:c.97C>T	p.Pro33Ser	p.P33S	ENST00000373509	NM_002648.3	33	Ccc/Tcc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460504	8460504	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148300682		P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	187	532	0	ENST00000356435.5:c.3782C>T	p.Thr1261Met	p.T1261M	ENST00000356435		1261	aCg/aTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	129	525	9	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
SMO	6608	MSKCC	GRCh37	7	128829075	128829075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1247591045		P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	25	92	0	ENST00000249373.3:c.88del	p.Ala30ArgfsTer25	p.A30Rfs*25	ENST00000249373	NM_005631.4	28	cGg/cg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739894	41739894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	155	569	0	ENST00000242208.4:c.79G>A	p.Glu27Lys	p.E27K	ENST00000242208	NM_002192.2	27	Gag/Aag																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226049	2226049	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	69	982	1	ENST00000326181.6:c.1747-1G>T		p.X583_splice	ENST00000326181	NM_032271.2	583																																																																																
ABL1	25	MSKCC	GRCh37	9	133760430	133760430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	88	957	2	ENST00000318560.5:c.2753C>T	p.Pro918Leu	p.P918L	ENST00000318560	NM_005157.4	918	cCg/cTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517874	187517874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	50	511	1	ENST00000441802.2:c.12820G>A	p.Glu4274Lys	p.E4274K	ENST00000441802	NM_005245.3	4274	Gaa/Aaa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5243975	5243975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	71	828	0	ENST00000357368.4:c.1507G>A	p.Ala503Thr	p.A503T	ENST00000357368	NM_002850.3	503	Gcc/Acc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132814	152132815	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	149	749	0	ENST00000262189.6:c.57dup	p.Glu20ArgfsTer39	p.E20Rfs*39	ENST00000262189	NM_170606.2	19	-/C																																																																															
TSHR	7253	MSKCC	GRCh37	14	81554306	81554306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	29	370	0	ENST00000298171.2:c.326G>A	p.Arg109Gln	p.R109Q	ENST00000298171	NM_000369.2	109	cGg/cAg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912485	50912485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	62	899	1	ENST00000440232.2:c.1999C>T	p.Arg667Trp	p.R667W	ENST00000440232	NM_002691.3	667	Cgg/Tgg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2126085	2126085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	153	947	0	ENST00000219476.3:c.2656G>T	p.Val886Leu	p.V886L	ENST00000219476	NM_000548.3	886	Gtg/Ttg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867714	45867714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	304	1025	0	ENST00000391945.4:c.686C>T	p.Ala229Val	p.A229V	ENST00000391945	NM_000400.3	229	gCc/gTc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190704	11190704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	322	945	1	ENST00000361445.4:c.5495C>T	p.Ala1832Val	p.A1832V	ENST00000361445	NM_004958.3	1832	gCc/gTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254653	16254653	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	40	524	0	ENST00000375759.3:c.1918G>T	p.Gly640Cys	p.G640C	ENST00000375759	NM_015001.2	640	Ggc/Tgc																																																																															
IGF2	3481	MSKCC	GRCh37	11	2156620	2156620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	78	838	0	ENST00000434045.2:c.302G>A	p.Cys101Tyr	p.C101Y	ENST00000434045	NM_001127598.1	101	tGt/tAt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435197	18435197	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	22	399	0	ENST00000266497.5:c.182A>G	p.Asn61Ser	p.N61S	ENST00000266497		61	aAc/aGc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230704	46230704	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	24	385	0	ENST00000334344.6:c.953T>C	p.Leu318Pro	p.L318P	ENST00000334344	NM_152641.2	318	cTt/cCt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426580	49426580	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1208	106	994	0	ENST00000301067.7:c.11908C>A	p.Gln3970Lys	p.Q3970K	ENST00000301067	NM_003482.3	3970	Cag/Aag																																																																															
POLE	5426	MSKCC	GRCh37	12	133240999	133240999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	212	791	1	ENST00000320574.5:c.2518G>A	p.Ala840Thr	p.A840T	ENST00000320574	NM_006231.2	840	Gcc/Acc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107748	30107748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	152	621	0	ENST00000331968.5:c.932G>A	p.Arg311His	p.R311H	ENST00000331968	NM_002742.2	311	cGt/cAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862910	9862910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	35	659	0	ENST00000330684.3:c.2393G>A	p.Gly798Glu	p.G798E	ENST00000330684	NM_001134407.1	798	gGg/gAg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40462592	40462592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	83	751	0	ENST00000345506.4:c.2290G>A	p.Val764Met	p.V764M	ENST00000345506	NM_003152.3	764	Gtg/Atg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870591	40870591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	205	841	0	ENST00000428826.2:c.812del	p.Pro271LeufsTer97	p.P271Lfs*97	ENST00000428826		271	cCt/ct																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78617573	78617573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	115	422	0	ENST00000306801.3:c.311C>T	p.Ala104Val	p.A104V	ENST00000306801	NM_020761.2	104	gCa/gTa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2202721	2202721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	199	823	0	ENST00000398665.3:c.730G>A	p.Ala244Thr	p.A244T	ENST00000398665	NM_032482.2	244	Gcc/Acc																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627759	14627759	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	198	827	0	ENST00000254322.2:c.311A>G	p.Glu104Gly	p.E104G	ENST00000254322	NM_006145.1	104	gAg/gGg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221508	36221508	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	127	994	1	ENST00000222270.7:c.5267T>A	p.Ile1756Asn	p.I1756N	ENST00000222270	NM_014727.1	1756	aTt/aAt																																																																															
ERF	2077	MSKCC	GRCh37	19	42753602	42753602	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	59	1078	3	ENST00000222329.4:c.662del	p.Pro221ArgfsTer50	p.P221Rfs*50	ENST00000222329	NM_006494.2	221	cCg/cg																																																																															
ALK	238	MSKCC	GRCh37	2	29446266	29446266	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	217	754	0	ENST00000389048.3:c.3301A>G	p.Lys1101Glu	p.K1101E	ENST00000389048	NM_004304.4	1101	Aag/Gag																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46597036	46597036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	49	537	0	ENST00000263734.3:c.850C>A	p.Leu284Ile	p.L284I	ENST00000263734	NM_001430.4	284	Cta/Ata																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027538	48027538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	26	361	0	ENST00000234420.5:c.2416T>C	p.Ser806Pro	p.S806P	ENST00000234420	NM_000179.2	806	Tcc/Ccc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57466844	57466844	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	44	382	0	ENST00000371085.3:c.63G>T	p.Glu21Asp	p.E21D	ENST00000371085	NM_000516.4	21	gaG/gaT																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799574	72799574	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	184	574	0	ENST00000325599.8:c.1595T>C	p.Leu532Pro	p.L532P	ENST00000325599	NM_018130.2	532	cTt/cCt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35861058	35861058	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	102	414	0	ENST00000303115.3:c.187G>T	p.Asp63Tyr	p.D63Y	ENST00000303115	NM_002185.3	63	Gat/Tat																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874644	35874644	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	92	433	0	ENST00000303115.3:c.800G>T	p.Arg267Met	p.R267M	ENST00000303115	NM_002185.3	267	aGg/aTg																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158577	26158577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	56	703	0	ENST00000289316.2:c.180G>T	p.Met60Ile	p.M60I	ENST00000289316	NM_138720.2	60	atG/atT																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652194	36652194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	276	928	0	ENST00000244741.5:c.316G>A	p.Ala106Thr	p.A106T	ENST00000244741	NM_000389.4	106	Gca/Aca																																																																															
FYN	2534	MSKCC	GRCh37	6	111983033	111983033	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	259	799	0	ENST00000368678.4:c.1514A>G	p.Glu505Gly	p.E505G	ENST00000368678		505	gAa/gGa																																																																															
FYN	2534	MSKCC	GRCh37	6	111983103	111983103	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	61	687	0	ENST00000368678.4:c.1444A>G	p.Met482Val	p.M482V	ENST00000368678		482	Atg/Gtg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444309	50444309	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	116	370	0	ENST00000331340.3:c.239A>G	p.Glu80Gly	p.E80G	ENST00000331340	NM_006060.4	80	gAg/gGg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69012046	69012046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	152	552	0	ENST00000288368.4:c.2683C>A	p.His895Asn	p.H895N	ENST00000288368	NM_024870.2	895	Cac/Aac																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87325642	87325642	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	110	586	0	ENST00000277120.3:c.519T>A	p.Asp173Glu	p.D173E	ENST00000277120		173	gaT/gaA																																																																															
AR	367	MSKCC	GRCh37	X	66765440	66765440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	221	998	0	ENST00000374690.3:c.452C>T	p.Ala151Val	p.A151V	ENST00000374690	NM_000044.3	151	gCa/gTa																																																																															
ATRX	546	MSKCC	GRCh37	X	76937662	76937662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	22	494	1	ENST00000373344.5:c.3086C>A	p.Pro1029His	p.P1029H	ENST00000373344	NM_000489.3	1029	cCt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	198	378	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0050272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	109	401	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579269	7579474	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAGAAGCCCAGACGGAAACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGGACAGAAGATGACAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTGCAGGGGCCACGGGG	GGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAGAAGCCCAGACGGAAACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGGACAGAAGATGACAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTGCAGGGGCCACGGGG	-			P-0050272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	210	381	0	ENST00000269305.4:c.213_375+43del		p.X71_splice	ENST00000269305	NM_001126112.2	71																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120460314	120460314	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	60	503	0	ENST00000256646.2:c.6001G>T	p.Ala2001Ser	p.A2001S	ENST00000256646	NM_024408.3	2001	Gcc/Tcc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115941	8115942	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0050274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	78	411	0	ENST00000346208.3:c.1289_1290dup	p.Gly431LeufsTer45	p.G431Lfs*45	ENST00000346208		429	-/TT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	397	715	0	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0050275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	634	401	2	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0050275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	389	623	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105553	27105553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	309	364	0	ENST00000324856.7:c.5164C>T	p.Arg1722Ter	p.R1722*	ENST00000324856	NM_006015.4	1722	Cga/Tga																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46724370	46724370	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138566817		P-0050275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	76	409	0	ENST00000371975.4:c.223C>T	p.Arg75Ter	p.R75*	ENST00000371975	NM_003579.3	75	Cga/Tga																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30315354	30315354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	93	306	0	ENST00000322652.5:c.1039G>A	p.Glu347Lys	p.E347K	ENST00000322652	NM_015355.2	347	Gaa/Aaa																																																																															
TET1	80312	MSKCC	GRCh37	10	70404607	70404609	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0050275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	193	400	1	ENST00000373644.4:c.2122_2124del	p.Glu708del	p.E708del	ENST00000373644	NM_030625.2	707	gtGGAg/gtg																																																																															
ACVR1	90	MSKCC	GRCh37	2	158622618	158622618	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	175	349	0	ENST00000263640.3:c.881A>G	p.Tyr294Cys	p.Y294C	ENST00000263640	NM_001105.4	294	tAt/tGt																																																																															
IRF4	3662	MSKCC	GRCh37	6	394875	394875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	158	393	0	ENST00000380956.4:c.271C>T	p.Pro91Ser	p.P91S	ENST00000380956	NM_001195286.1	91	Ccc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0050278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	20	349	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	498206	498206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	34	399	0	ENST00000399788.2:c.52G>A	p.Glu18Lys	p.E18K	ENST00000399788	NM_001042603.1	18	Gag/Aag																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502455	186502455	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	25	263	0	ENST00000323963.5:c.178C>T	p.Gln60Ter	p.Q60*	ENST00000323963		60	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	55	388	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0050283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	62	618	1	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118366483	118366483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	35	390	3	ENST00000534358.1:c.5432G>A	p.Arg1811Gln	p.R1811Q	ENST00000534358	NM_005933.3	1811	cGa/cAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0050286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	132	573	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10260269	10260269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	84	608	0	ENST00000340748.4:c.2398G>A	p.Gly800Arg	p.G800R	ENST00000340748		800	Ggg/Agg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998136	169998136	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	67	386	0	ENST00000295797.4:c.827C>G	p.Thr276Arg	p.T276R	ENST00000295797	NM_002740.5	276	aCa/aGa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034418	47034421	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GTCA	GTCA	-			P-0050286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	64	656	0	ENST00000329236.7:c.273_276del	p.Gln92AlafsTer96	p.Q92Afs*96	ENST00000329236	NM_001204466.1	91	gGTCAg/gg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0050287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	342	582	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0050287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	147	764	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535430	66535430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	101	818	0	ENST00000273854.3:c.31C>T	p.Arg11Cys	p.R11C	ENST00000273854	NM_004439.5	11	Cgc/Tgc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46242651	46242651	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	49	284	0	ENST00000334344.6:c.1613G>C	p.Cys538Ser	p.C538S	ENST00000334344	NM_152641.2	538	tGt/tCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0050289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	310	657	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
AR	367	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	134	215	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374298	138374298	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	160	417	0	ENST00000289153.2:c.3146T>G	p.Leu1049Arg	p.L1049R	ENST00000289153	NM_006219.2	1049	cTc/cGc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753764	42753764	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	205	742	0	ENST00000222329.4:c.500del	p.Ser167TyrfsTer104	p.S167Yfs*104	ENST00000222329	NM_006494.2	167	tCa/ta																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960013	134960013	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	170	478	0	ENST00000398015.3:c.2370G>T	p.Trp790Cys	p.W790C	ENST00000398015	NM_004441.4	790	tgG/tgT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629410	187629410	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	85	543	0	ENST00000441802.2:c.1572C>G	p.Asn524Lys	p.N524K	ENST00000441802	NM_005245.3	524	aaC/aaG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	48	389	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0050310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	60	603	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	81	389	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	99	633	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63661984	63661985	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	41	391	0	ENST00000279873.7:c.88_89insT	p.Glu30ValfsTer45	p.E30Vfs*45	ENST00000279873	NM_032199.2	30	gaa/gTaa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435912	56435912	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	92	635	0	ENST00000407977.2:c.1225del	p.Gln409SerfsTer10	p.Q409Sfs*10	ENST00000407977		409	Cag/ag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212652798	212652798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	11	403	0	ENST00000342788.4:c.508C>A	p.Pro170Thr	p.P170T	ENST00000342788	NM_005235.2	170	Cca/Aca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970969	21970969	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	177	566	0	ENST00000304494.5:c.389T>G	p.Leu130Arg	p.L130R	ENST00000304494	NM_000077.4	130	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0050313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	133	522	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011144	12011144	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	113	393	0	ENST00000353533.5:c.551C>A	p.Ser184Ter	p.S184*	ENST00000353533	NM_003010.3	184	tCg/tAg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880997	37880998	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TCT			P-0050313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	921	591	0	ENST00000269571.5:c.2326_2327insTCT	p.Gly776delinsValCys	p.G776delinsVC	ENST00000269571		776	ggt/gTCTgt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138897	64138898	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGT			P-0050313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	100	557	0	ENST00000334205.4:c.2267_2269dup	p.Val756dup	p.V756dup	ENST00000334205	NM_003942.2	756	ccc/ccCGTc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914700	32914700	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	141	436	0	ENST00000380152.3:c.6208G>C	p.Glu2070Gln	p.E2070Q	ENST00000380152		2070	Gaa/Caa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727523	88727523	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	73	406	0	ENST00000360948.2:c.256G>C	p.Glu86Gln	p.E86Q	ENST00000360948	NM_001012338.2	86	Gag/Cag																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182252	38182252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	227	459	0	ENST00000396334.3:c.688C>A	p.Arg230Ser	p.R230S	ENST00000396334	NM_002468.4	230	Cgc/Agc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0050315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	26	306	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0050315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	55	421	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0050315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	23	369	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	39	488	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7989385	7989385	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200663524		P-0050315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	30	750	1	ENST00000319144.4:c.301G>A	p.Ala101Thr	p.A101T	ENST00000319144	NM_001139.2	101	Gcc/Acc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374887	45374887	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	28	456	0	ENST00000262160.6:c.956T>C	p.Val319Ala	p.V319A	ENST00000262160	NM_005901.5	319	gTt/gCt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3831308	3831308	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0050315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	27	289	0	ENST00000262367.5:c.1574-1G>A		p.X525_splice	ENST00000262367	NM_004380.2	525																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66509128	66509128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	42	286	0	ENST00000273854.3:c.199C>T	p.Arg67Cys	p.R67C	ENST00000273854	NM_004439.5	67	Cgc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108172446	108172446	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	38	380	0	ENST00000278616.4:c.5249G>A	p.Trp1750Ter	p.W1750*	ENST00000278616	NM_000051.3	1750	tGg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112174989	112174990	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAGT			P-0050315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	40	216	0	ENST00000257430.4:c.3699_3702dup	p.Ser1235LysfsTer6	p.S1235Kfs*6	ENST00000257430	NM_000038.5	1233	cca/ccAAGTa																																																																															
MED12	9968	MSKCC	GRCh37	X	70349900	70349900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	119	139	0	ENST00000374080.3:c.3883C>T	p.Arg1295Cys	p.R1295C	ENST00000374080		1295	Cgt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0050384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	64	690	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038879	47038879	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	89	874	0	ENST00000329236.7:c.655G>T	p.Glu219Ter	p.E219*	ENST00000329236	NM_001204466.1	219	Gag/Tag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638569	176638569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	45	686	0	ENST00000439151.2:c.3169A>G	p.Asn1057Asp	p.N1057D	ENST00000439151	NM_022455.4	1057	Aat/Gat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0050387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	49	446	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	71	606	0	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444435	50444435	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	37	298	1	ENST00000331340.3:c.365G>T	p.Cys122Phe	p.C122F	ENST00000331340	NM_006060.4	122	tGt/tTt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410344	63410344	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	61	696	0	ENST00000330258.3:c.2823C>A	p.Ser941Arg	p.S941R	ENST00000330258	NM_152424.3	941	agC/agA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061214	38061231	+	inframe_deletion	In_Frame_Del	DEL	AGCAGCCGTTCTCGAACA	AGCAGCCGTTCTCGAACA	-			P-0050401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	209	681	0	ENST00000250448.2:c.758_775del	p.Met253_Tyr259delinsAsn	p.M253_Y259delinsN	ENST00000250448	NM_004496.3	253	aTGTTCGAGAACGGCTGCTac/aac																																																																															
FLCN	201163	MSKCC	GRCh37	17	17120412	17120412	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	121	626	0	ENST00000285071.4:c.1147C>G	p.Leu383Val	p.L383V	ENST00000285071	NM_144997.5	383	Ctc/Gtc																																																																															
HGF	3082	MSKCC	GRCh37	7	81372701	81372701	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	120	400	0	ENST00000222390.5:c.833C>G	p.Thr278Ser	p.T278S	ENST00000222390	NM_000601.4	278	aCc/aGc																																																																															
APC	324	MSKCC	GRCh37	5	112175879	112175886	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAATGA	GAAAATGA	T			P-0050401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	77	267	0	ENST00000257430.4:c.4588_4595delinsT	p.Glu1530SerfsTer33	p.E1530Sfs*33	ENST00000257430	NM_000038.5	1530	GAAAATGAc/Tc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061205	38061205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	32	517	0	ENST00000250448.2:c.784C>T	p.Arg262Cys	p.R262C	ENST00000250448	NM_004496.3	262	Cgc/Tgc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627418	37627419	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0050404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	20	487	0	ENST00000447079.4:c.1336_1337del	p.Lys446ValfsTer15	p.K446Vfs*15	ENST00000447079	NM_015083.1	445	AAa/a																																																																															
CDK12	51755	MSKCC	GRCh37	17	37646846	37646847	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGAAGGAACAGAGGACACGTCACTTACTCACAGACCTTCCTCTCCCTCCAGAGCTCCCTGGTG			P-0050404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	22	362	0	ENST00000447079.4:c.1973_2036dup	p.Asp679GlufsTer42	p.D679Efs*42	ENST00000447079	NM_015083.1	656	-/GAGAAGGAACAGAGGACACGTCACTTACTCACAGACCTTCCTCTCCCTCCAGAGCTCCCTGGTG																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942571	17942571	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	41	695	0	ENST00000458235.1:c.2717C>A	p.Pro906His	p.P906H	ENST00000458235	NM_000215.3	906	cCc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0050406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	129	406	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692794	89692794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	43	265	0	ENST00000371953.3:c.278A>G	p.His93Arg	p.H93R	ENST00000371953	NM_000314.4	93	cAt/cGt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46240692	46240695	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0050406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	62	267	0	ENST00000334344.6:c.1556_1559delATAG	p.Asp519ValfsTer9	p.D519Vfs*9	ENST00000334344	NM_152641.2	518	ATAGat/at																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519963		P-0050406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	78	242	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78857758	78857758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	146	570	0	ENST00000306801.3:c.1828G>A	p.Asp610Asn	p.D610N	ENST00000306801	NM_020761.2	610	Gac/Aac																																																																															
EZH2	2146	MSKCC	GRCh37	7	148516713	148516713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	23	275	0	ENST00000320356.2:c.974G>T	p.Cys325Phe	p.C325F	ENST00000320356	NM_004456.4	325	tGt/tTt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572171	64572171	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	263	705	0	ENST00000337652.1:c.1483G>T	p.Glu495Ter	p.E495*	ENST00000337652	NM_130803.2	495	Gag/Tag																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0050409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	385	500	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0050409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	138	405	4	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561052	9561052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	100	397	0	ENST00000353224.5:c.730G>A	p.Gly244Arg	p.G244R	ENST00000353224	NM_177990.2	244	Ggg/Agg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231788	36231788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	300	651	0	ENST00000300305.3:c.596G>A	p.Gly199Glu	p.G199E	ENST00000300305		199	gGg/gAg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0050411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	243	416	1	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0050411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	72	366	1	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178085	56178085	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	144	300	0	ENST00000399503.3:c.3058C>T	p.Gln1020Ter	p.Q1020*	ENST00000399503	NM_005921.1	1020	Caa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945131	151945131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	24	268	0	ENST00000262189.6:c.2388G>A	p.Met796Ile	p.M796I	ENST00000262189	NM_170606.2	796	atG/atA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711963	89711963	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0050411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	199	330	0	ENST00000371953.3:c.581T>A	p.Leu194Ter	p.L194*	ENST00000371953	NM_000314.4	194	tTg/tAg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146112	38146112	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			5642	324	547	0	ENST00000317025.8:c.3394G>C	p.Asp1132His	p.D1132H	ENST00000317025	NM_023034.1	1132	Gat/Cat																																																																															
FANCC	2176	MSKCC	GRCh37	9	97879632	97879632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	208	455	1	ENST00000289081.3:c.1037C>T	p.Pro346Leu	p.P346L	ENST00000289081	NM_000136.2	346	cCa/cTa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37667835	37667835	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	110	447	0	ENST00000447079.4:c.2720T>C	p.Leu907Pro	p.L907P	ENST00000447079	NM_015083.1	907	cTg/cCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0050417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	82	331	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0050417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	44	255	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68844139	68844139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	89	482	0	ENST00000261769.5:c.727G>A	p.Glu243Lys	p.E243K	ENST00000261769	NM_004360.3	243	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426267	49426268	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0050417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	104	649	1	ENST00000301067.7:c.12220_12221del	p.Gln4074ThrfsTer32	p.Q4074Tfs*32	ENST00000301067	NM_003482.3	4074	CAa/a																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	58	315	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0050420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	111	561	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604764	48604765	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	54	336	0	ENST00000342988.3:c.1587dup	p.His530ThrfsTer47	p.H530Tfs*47	ENST00000342988	NM_005359.5	529	tta/ttAa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257158	16257158	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	38	377	0	ENST00000375759.3:c.4423C>T	p.Arg1475Ter	p.R1475*	ENST00000375759	NM_015001.2	1475	Cga/Tga																																																																															
CCND3	896	MSKCC	GRCh37	6	41909291	41909291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	121	590	0	ENST00000372991.4:c.97C>T	p.Arg33Cys	p.R33C	ENST00000372991	NM_001760.3	33	Cgc/Tgc																																																																															
AXL	558	MSKCC	GRCh37	19	41726595	41726595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	123	612	1	ENST00000301178.4:c.140C>T	p.Ala47Val	p.A47V	ENST00000301178	NM_021913.4	47	gCc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0050428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	15	474	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	18	424	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0050428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	17	443	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0050429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	55	222	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	115	414	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0050429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	37	345	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577555	7577555	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs375874539		P-0050429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	206	491	0	ENST00000269305.4:c.726C>G	p.Cys242Trp	p.C242W	ENST00000269305	NM_001126112.2	242	tgC/tgG																																																																															
APC	324	MSKCC	GRCh37	5	112116517	112116517	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	25	308	0	ENST00000257430.4:c.562C>T	p.Gln188Ter	p.Q188*	ENST00000257430	NM_000038.5	188	Caa/Taa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219008	36219008	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	149	495	0	ENST00000222270.7:c.4507T>G	p.Ser1503Ala	p.S1503A	ENST00000222270	NM_014727.1	1503	Tct/Gct																																																																															
BCL6	604	MSKCC	GRCh37	3	187447463	187447463	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	226	498	0	ENST00000232014.4:c.730C>T	p.Arg244Trp	p.R244W	ENST00000232014	NM_001130845.1	244	Cgg/Tgg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749464	41749464	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	124	444	0	ENST00000226382.2:c.331A>C	p.Lys111Gln	p.K111Q	ENST00000226382	NM_003924.3	111	Aaa/Caa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061215	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCAGCCGTTCTCGAACATGTT	GCAGCCGTTCTCGAACATGTT	-			P-0050434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	87	402	0	ENST00000250448.2:c.754_774delAACATGTTCGAGAACGGCTGC	p.Asn252_Cys258del	p.N252_C258del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTGC/-																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38148105	38148105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	195	502	0	ENST00000317025.8:c.3006C>A	p.Phe1002Leu	p.F1002L	ENST00000317025	NM_023034.1	1002	ttC/ttA																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522624	176522624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	159	627	0	ENST00000292408.4:c.1721C>T	p.Pro574Leu	p.P574L	ENST00000292408	NM_213647.1	574	cCc/cTc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061102	38061103	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0050445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	66	339	0	ENST00000250448.2:c.886dup	p.Asp296GlyfsTer7	p.D296Gfs*7	ENST00000250448	NM_004496.3	296	gac/gGac																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43785234	43785234	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0050445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	119	536	0	ENST00000382044.4:c.7+1G>C		p.X3_splice	ENST00000382044	NM_001141980.1	3																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0025689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	34	456	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	36	607	0	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097814	27097814	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	14	262	0	ENST00000324856.7:c.3404del	p.Pro1135LeufsTer26	p.P1135Lfs*26	ENST00000324856	NM_006015.4	1135	Cct/ct																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439935	56439960	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCAGCACCGAAGCCAGGATGATCA	GCGCAGCACCGAAGCCAGGATGATCA	TCG			P-0025689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	55	617	3	ENST00000407977.2:c.632_657delinsCGA	p.Val211AlafsTer40	p.V211Afs*40	ENST00000407977		211	gTGATCATCCTGGCTTCGGTGCTGCGC/gCGA																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120851	94120851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	40	433	0	ENST00000369303.4:c.200C>T	p.Pro67Leu	p.P67L	ENST00000369303	NM_004440.3	67	cCg/cTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971167	21971186	+	frameshift_variant	Frame_Shift_Del	DEL	AGCAGCAGCTCCGCCACTCG	AGCAGCAGCTCCGCCACTCG	CGCAGCC			P-0025689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	26	359	2	ENST00000304494.5:c.172_191delinsGGCTGCG	p.Arg58GlyfsTer84	p.R58Gfs*84	ENST00000304494	NM_000077.4	58	CGAGTGGCGGAGCTGCTGCTg/GGCTGCGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0028255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	60	613	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0028255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	65	537	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27058090	27058104	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCGCAGGTAAGATAT	CCGCAGGTAAGATAT	-			P-0028255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	35	356	0	ENST00000324856.7:c.1800_1803+11del		p.X600_splice	ENST00000324856	NM_006015.4	600																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153247338	153247338	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	49	338	0	ENST00000281708.4:c.1464del	p.Ile488MetfsTer10	p.I488Mfs*10	ENST00000281708	NM_033632.3	488	atT/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	76	437	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726951	46726951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	69	394	0	ENST00000371975.4:c.785G>A	p.Arg262His	p.R262H	ENST00000371975	NM_003579.3	262	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579366	7579366	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	138	715	0	ENST00000269305.4:c.321del	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/ta																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492920	56492920	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	48	222	0	ENST00000407977.2:c.19del	p.Leu7CysfsTer11	p.L7Cfs*11	ENST00000407977		7	Ctg/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0047477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			624	130	372	2	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106355	27106355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	223	299	0	ENST00000324856.7:c.5966G>A	p.Arg1989Gln	p.R1989Q	ENST00000324856	NM_006015.4	1989	cGa/cAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604673	48604673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			187	124	353	0	ENST00000342988.3:c.1495T>C	p.Cys499Arg	p.C499R	ENST00000342988	NM_005359.5	499	Tgc/Cgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577501	7577501	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0047477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	225	305	0	ENST00000269305.4:c.780del	p.Ser261ValfsTer84	p.S261Vfs*84	ENST00000269305	NM_001126112.2	260	tcC/tc																																																																															
TET1	80312	MSKCC	GRCh37	10	70446321	70446321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			413	99	455	0	ENST00000373644.4:c.5261C>T	p.Ser1754Phe	p.S1754F	ENST00000373644	NM_030625.2	1754	tCt/tTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0047477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	178	469	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
PIK3C2G	5288	MSKCC	GRCh37	12	18715789	18715789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			189	59	284	0	ENST00000266497.5:c.3620G>C	p.Arg1207Thr	p.R1207T	ENST00000266497		1207	aGa/aCa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49415906	49415906	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	149	276	0	ENST00000301067.7:c.16441T>C	p.Cys5481Arg	p.C5481R	ENST00000301067	NM_003482.3	5481	Tgt/Cgt																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56809865	56809865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	52	350	0	ENST00000337432.4:c.986C>T	p.Ser329Leu	p.S329L	ENST00000337432	NM_058216.2	329	tCa/tTa																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80537128	80537129	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	128	654	0	ENST00000286548.4:c.269dup	p.Met90IlefsTer15	p.M90Ifs*15	ENST00000286548	NM_002072.3	90	atg/atTg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146978	38146980	+	missense_variant	Missense_Mutation	ONP	CTT	CTT	GTA			P-0047477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			751	236	488	0	ENST00000317025.8:c.3162_3164delinsTAC	p.Gln1054_Arg1055delinsHisThr	p.Q1054_R1055delinsHT	ENST00000317025	NM_023034.1	1054	caAAGa/caTACa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222757	53222758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	154	346	0	ENST00000375401.3:c.4178dup	p.Ala1394GlyfsTer22	p.A1394Gfs*22	ENST00000375401	NM_004187.3	1393	gag/gaAg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	18	427	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730011	41730011	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	22	579	0	ENST00000242208.4:c.518T>C	p.Ile173Thr	p.I173T	ENST00000242208	NM_002192.2	173	aTc/aCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	74	369	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0049874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	271	927	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0049874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	142	764	0	ENST00000304494.5:c.132C>G	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/taG																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034417	47034417	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0049874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	148	1011	0	ENST00000329236.7:c.272-1G>A		p.X91_splice	ENST00000329236	NM_001204466.1	91																																																																																
TOP1	7150	MSKCC	GRCh37	20	39728724	39728724	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	44	299	0	ENST00000361337.2:c.1004T>G	p.Leu335Arg	p.L335R	ENST00000361337	NM_003286.2	335	cTg/cGg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936075	49936076	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	134	1372	0	ENST00000296474.3:c.1594dup	p.Thr532AsnfsTer39	p.T532Nfs*39	ENST00000296474	NM_002447.2	532	acc/aAcc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			200	114	275	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	54	356	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			307	221	454	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435798	110435798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			467	137	357	0	ENST00000375856.3:c.2603C>T	p.Ser868Leu	p.S868L	ENST00000375856	NM_003749.2	868	tCg/tTg																																																																															
RAD51	5888	MSKCC	GRCh37	15	41021830	41021830	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			456	64	406	0	ENST00000267868.3:c.772G>A	p.Glu258Lys	p.E258K	ENST00000267868	NM_002875.4	258	Gag/Aag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675622	86675622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			145	66	175	0	ENST00000274376.6:c.2558C>T	p.Ser853Leu	p.S853L	ENST00000274376	NM_002890.2	853	tCa/tTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023696	27023696	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			832	231	464	0	ENST00000324856.7:c.802C>T	p.Gln268Ter	p.Q268*	ENST00000324856	NM_006015.4	268	Cag/Tag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231415	5231415	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			661	163	676	0	ENST00000357368.4:c.2061G>C	p.Glu687Asp	p.E687D	ENST00000357368	NM_002850.3	687	gaG/gaC																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873648	35873648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			249	186	256	0	ENST00000303115.3:c.604G>A	p.Glu202Lys	p.E202K	ENST00000303115	NM_002185.3	202	Gag/Aag																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422086	81422086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			574	110	473	0	ENST00000298171.2:c.62G>A	p.Gly21Glu	p.G21E	ENST00000298171	NM_000369.2	21	gGa/gAa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89877476	89877476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	103	477	0	ENST00000389301.3:c.287C>T	p.Ser96Phe	p.S96F	ENST00000389301	NM_000135.2	96	tCt/tTt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090508	5090508	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			148	25	193	0	ENST00000381652.3:c.2824C>T	p.Gln942Ter	p.Q942*	ENST00000381652	NM_004972.3	942	Caa/Taa																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250274	110250274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	260	747	0	ENST00000374672.4:c.401C>T	p.Ser134Leu	p.S134L	ENST00000374672	NM_004235.4	134	tCg/tTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100919	27100919	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			602	112	537	0	ENST00000324856.7:c.4201C>T	p.Gln1401Ter	p.Q1401*	ENST00000324856	NM_006015.4	1401	Cag/Tag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976373	18976373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			709	240	744	1	ENST00000262803.5:c.3023G>A	p.Arg1008Gln	p.R1008Q	ENST00000262803	NM_002911.3	1008	cGa/cAa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163282	32163282	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			882	1419	827	0	ENST00000375023.3:c.5944C>T	p.Gln1982Ter	p.Q1982*	ENST00000375023	NM_004557.3	1982	Caa/Taa																																																																															
CASP8	841	MSKCC	GRCh37	2	202150013	202150013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			550	103	460	0	ENST00000358485.4:c.1454G>A	p.Cys485Tyr	p.C485Y	ENST00000358485	NM_001080125.1	485	tGc/tAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913836	32913836	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			219	30	277	0	ENST00000380152.3:c.5344C>T	p.Gln1782Ter	p.Q1782*	ENST00000380152		1782	Caa/Taa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473705	67473705	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			606	176	534	1	ENST00000327367.4:c.785A>G	p.Asp262Gly	p.D262G	ENST00000327367	NM_005902.3	262	gAc/gGc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206658359	206658359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			571	98	513	0	ENST00000367120.3:c.1453G>A	p.Glu485Lys	p.E485K	ENST00000367120	NM_014002.3	485	Gag/Aag																																																																															
SESN3	143686	MSKCC	GRCh37	11	94910935	94910935	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	203	381	0	ENST00000536441.1:c.1195A>C	p.Thr399Pro	p.T399P	ENST00000536441	NM_144665.3	399	Acc/Ccc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118353162	118353162	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			397	95	269	0	ENST00000534358.1:c.4038A>C	p.Lys1346Asn	p.K1346N	ENST00000534358	NM_005933.3	1346	aaA/aaC																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18499754	18499754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			537	53	239	0	ENST00000266497.5:c.1609G>A	p.Glu537Lys	p.E537K	ENST00000266497		537	Gaa/Aaa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865566	57865566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			752	158	643	1	ENST00000228682.2:c.3043G>A	p.Glu1015Lys	p.E1015K	ENST00000228682	NM_005269.2	1015	Gag/Aag																																																																															
POLE	5426	MSKCC	GRCh37	12	133254014	133254014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			422	77	381	0	ENST00000320574.5:c.736G>A	p.Val246Ile	p.V246I	ENST00000320574	NM_006231.2	246	Gtc/Atc																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40678641	40678641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			504	68	430	0	ENST00000249776.8:c.383C>T	p.Ser128Leu	p.S128L	ENST00000249776	NM_033286.3	128	tCa/tTa																																																																															
MGA	23269	MSKCC	GRCh37	15	42041857	42041857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	130	345	0	ENST00000219905.7:c.6052G>A	p.Glu2018Lys	p.E2018K	ENST00000219905	NM_001164273.1	2018	Gaa/Aaa																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40460303	40460303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			726	85	527	3	ENST00000345506.4:c.2014G>A	p.Asp672Asn	p.D672N	ENST00000345506	NM_003152.3	672	Gac/Aac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435458	56435458	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			773	285	619	1	ENST00000407977.2:c.1679A>C	p.Lys560Thr	p.K560T	ENST00000407977		560	aAg/aCg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291182	10291182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	133	467	0	ENST00000340748.4:c.289C>T	p.His97Tyr	p.H97Y	ENST00000340748		97	Cat/Tat																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11095023	11095023	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			775	209	939	0	ENST00000344626.4:c.196C>G	p.Gln66Glu	p.Q66E	ENST00000344626	NM_003072.3	66	Cag/Gag																																																																															
RRAS	6237	MSKCC	GRCh37	19	50139099	50139099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	329	276	1	ENST00000246792.3:c.464C>T	p.Ser155Leu	p.S155L	ENST00000246792	NM_006270.3	155	tCa/tTa																																																																															
REL	5966	MSKCC	GRCh37	2	61147569	61147569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			57	15	49	0	ENST00000295025.8:c.974C>T	p.Ser325Leu	p.S325L	ENST00000295025	NM_002908.2	325	tCa/tTa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47084050	47084050	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			404	65	342	0	ENST00000409792.3:c.7238+1G>T		p.X2413_splice	ENST00000409792	NM_014159.6	2413																																																																																
SETD2	29072	MSKCC	GRCh37	3	47164321	47164321	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			179	69	224	0	ENST00000409792.3:c.1805del	p.Met602ArgfsTer20	p.M602Rfs*20	ENST00000409792	NM_014159.6	602	aTg/ag																																																																															
RHOA	387	MSKCC	GRCh37	3	49397719	49397719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			445	271	440	0	ENST00000418115.1:c.505G>A	p.Glu169Lys	p.E169K	ENST00000418115	NM_001664.2	169	Gag/Aag																																																																															
MST1R	4486	MSKCC	GRCh37	3	49932639	49932639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			794	145	597	1	ENST00000296474.3:c.3232G>A	p.Glu1078Lys	p.E1078K	ENST00000296474	NM_002447.2	1078	Gag/Aag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643384	52643384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			300	66	314	0	ENST00000394830.3:c.2512G>A	p.Asp838Asn	p.D838N	ENST00000394830	NM_018313.4	838	Gat/Aat																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72891467	72891467	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			444	69	384	0	ENST00000325599.8:c.295A>C	p.Lys99Gln	p.K99Q	ENST00000325599	NM_018130.2	99	Aaa/Caa																																																																															
TP63	8626	MSKCC	GRCh37	3	189585651	189585651	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			273	139	382	0	ENST00000264731.3:c.912C>A	p.Tyr304Ter	p.Y304*	ENST00000264731	NM_003722.4	304	taC/taA																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287398	33287398	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			903	120	452	0	ENST00000374542.5:c.1699T>G	p.Phe567Val	p.F567V	ENST00000374542	NM_001141970.1	567	Ttt/Gtt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5072564	5072564	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			225	97	296	0	ENST00000381652.3:c.1714C>T	p.Gln572Ter	p.Q572*	ENST00000381652	NM_004972.3	572	Caa/Taa																																																																															
SYK	6850	MSKCC	GRCh37	9	93627348	93627348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			310	141	335	0	ENST00000375746.1:c.815G>A	p.Gly272Asp	p.G272D	ENST00000375746	NM_001174167.1	272	gGc/gAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395225	139395225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			652	365	765	0	ENST00000277541.6:c.5713G>A	p.Asp1905Asn	p.D1905N	ENST00000277541	NM_017617.3	1905	Gac/Aac																																																																															
ATRX	546	MSKCC	GRCh37	X	76938092	76938092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			498	65	407	0	ENST00000373344.5:c.2656G>A	p.Glu886Lys	p.E886K	ENST00000373344	NM_000489.3	886	Gag/Aag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65310572	65310572	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	15	363	0	ENST00000342505.4:c.2116G>A	p.Glu706Lys	p.E706K	ENST00000342505	NM_002227.2	706	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			304	192	333	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0049545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	367	582	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0049545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			167	243	328	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959240	2959240	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148354898		P-0049545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			549	271	451	0	ENST00000396946.4:c.2276G>A	p.Arg759Gln	p.R759Q	ENST00000396946	NM_032415.4	759	cGg/cAg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50815323	50815323	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0049545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			556	81	429	0	ENST00000398568.2:c.1675+1G>C		p.X559_splice	ENST00000398568	NM_001042412.1	559																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41277955	41277955	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	168	321	0	ENST00000349496.5:c.1919T>A	p.Leu640Gln	p.L640Q	ENST00000349496	NM_001904.3	640	cTg/cAg																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127933461	127933461	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0049545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			354	208	317	0	ENST00000373547.4:c.76-2A>T		p.X26_splice	ENST00000373547	NM_002721.4	26																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0049841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	96	174	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0049841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	103	361	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	203	444	1	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473779	67473779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	186	300	0	ENST00000327367.4:c.859C>T	p.Arg287Trp	p.R287W	ENST00000327367	NM_005902.3	287	Cgg/Tgg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47144880	47144880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	80	256	0	ENST00000409792.3:c.4873C>T	p.Arg1625Cys	p.R1625C	ENST00000409792	NM_014159.6	1625	Cgt/Tgt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749340	43749340	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	108	243	0	ENST00000382044.4:c.1466C>G	p.Ser489Cys	p.S489C	ENST00000382044	NM_001141980.1	489	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	112	347	0	ENST00000269305.4:c.580C>A	p.Leu194Ile	p.L194I	ENST00000269305	NM_001126112.2	194	Ctt/Att																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484415	57484415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	67	246	0	ENST00000371085.3:c.596G>A	p.Arg199His	p.R199H	ENST00000371085	NM_000516.4	199	cGc/cAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162966	47162967	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	63	211	0	ENST00000409792.3:c.3159dup	p.Thr1054TyrfsTer5	p.T1054Yfs*5	ENST00000409792	NM_014159.6	1053	-/T																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137522069	137522070	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0049841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	60	131	0	ENST00000367739.4:c.809_810del	p.Ile270LysfsTer4	p.I270Kfs*4	ENST00000367739	NM_000416.2	270	aTT/a																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152007146	152007146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	94	221	0	ENST00000262189.6:c.754C>A	p.His252Asn	p.H252N	ENST00000262189	NM_170606.2	252	Cat/Aat																																																																															
ATRX	546	MSKCC	GRCh37	X	76777853	76777853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	132	222	0	ENST00000373344.5:c.6863G>A	p.Arg2288His	p.R2288H	ENST00000373344	NM_000489.3	2288	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577543	7577543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	28	579	0	ENST00000269305.4:c.738G>A	p.Met246Ile	p.M246I	ENST00000269305	NM_001126112.2	246	atG/atA																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112287	115112287	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	25	177	1	ENST00000257566.3:c.1453C>T	p.Gln485Ter	p.Q485*	ENST00000257566	NM_016569.3	485	Cag/Tag																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935620	13935620	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	41	332	0	ENST00000405192.2:c.1236G>C	p.Lys412Asn	p.K412N	ENST00000405192	NM_001163147.1	412	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0049892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	74	646	0	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0049892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	32	805	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140165	50140165	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	96	666	0	ENST00000246792.3:c.260A>T	p.Gln87Leu	p.Q87L	ENST00000246792	NM_006270.3	87	cAg/cTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044971	47044971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	121	450	2	ENST00000329236.7:c.2063G>A	p.Arg688His	p.R688H	ENST00000329236	NM_001204466.1	688	cGc/cAc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849858	156849858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	113	620	1	ENST00000524377.1:c.2114C>T	p.Thr705Ile	p.T705I	ENST00000524377	NM_002529.3	705	aCc/aTc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95557563	95557563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	41	332	0	ENST00000343455.3:c.5504A>G	p.Tyr1835Cys	p.Y1835C	ENST00000343455	NM_177438.2	1835	tAt/tGt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223666	53223667	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	102	429	0	ENST00000375401.3:c.3692dup	p.Leu1232ThrfsTer68	p.L1232Tfs*68	ENST00000375401	NM_004187.3	1231	cca/ccCa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933462	36933477	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCCCCAGCCTGGCT	TGGCCCCAGCCTGGCT	CCA			P-0049892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	99	853	2	ENST00000361632.4:c.1810_1825delinsTGG	p.Ser604TrpfsTer9	p.S604Wfs*9	ENST00000361632		604	AGCCAGGCTGGGGCCAcc/TGGcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0049894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	57	394	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68857311	68857312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	34	330	0	ENST00000261769.5:c.1947dup	p.Ile650TyrfsTer13	p.I650Yfs*13	ENST00000261769	NM_004360.3	649	tct/tcTt																																																																															
CBFB	865	MSKCC	GRCh37	16	67100610	67100610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	46	356	0	ENST00000412916.2:c.308T>C	p.Leu103Pro	p.L103P	ENST00000412916		103	cTg/cCg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55087029	55087029	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	44	343	0	ENST00000275493.2:c.59C>G	p.Pro20Arg	p.P20R	ENST00000275493	NM_005228.3	20	cCg/cGg																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0049896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	33	331	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88677026	88677026	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	17	227	0	ENST00000372037.3:c.811T>G	p.Trp271Gly	p.W271G	ENST00000372037	NM_004329.2	271	Tgg/Ggg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16021261	16021261	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	19	324	0	ENST00000268712.3:c.1996T>C	p.Tyr666His	p.Y666H	ENST00000268712	NM_006311.3	666	Tat/Cat																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41268766	41268766	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	50	387	0	ENST00000349496.5:c.1004A>T	p.Lys335Ile	p.K335I	ENST00000349496	NM_001904.3	335	aAa/aTa																																																																															
MGA	23269	MSKCC	GRCh37	15	42042125	42042125	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	55	411	0	ENST00000219905.7:c.6324del	p.Lys2108AsnfsTer5	p.K2108Nfs*5	ENST00000219905	NM_001164273.1	2107	cAa/ca																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157505480	157505480	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	50	370	0	ENST00000346085.5:c.3461G>C	p.Cys1154Ser	p.C1154S	ENST00000346085	NM_020732.3	1154	tGc/tCc																																																																															
MED12	9968	MSKCC	GRCh37	X	70349953	70349953	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	80	396	0	ENST00000374080.3:c.3936G>C	p.Leu1312Phe	p.L1312F	ENST00000374080		1312	ttG/ttC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0049948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	58	523	3	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0049948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	79	292	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69030797	69030797	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	71	252	0	ENST00000288368.4:c.3339C>G	p.Ser1113Arg	p.S1113R	ENST00000288368	NM_024870.2	1113	agC/agG																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061215	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCAGCCGTTCTCGAACATGTT	GCAGCCGTTCTCGAACATGTT	-			P-0049954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	33	725	0	ENST00000250448.2:c.754_774delAACATGTTCGAGAACGGCTGC	p.Asn252_Cys258del	p.N252_C258del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTGC/-																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949985	44949985	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	20	180	0	ENST00000377967.4:c.3754G>C	p.Ala1252Pro	p.A1252P	ENST00000377967	NM_021140.2	1252	Gca/Cca																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804149	46804163	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	CTCTTAAGGGGTAGC	CTCTTAAGGGGTAGC	-			P-0049954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	26	686	0	ENST00000290295.7:c.844_*3del		p.*282*	ENST00000290295	NM_006361.5	282																																																																																
TP63	8626	MSKCC	GRCh37	3	189456528	189456528	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	39	560	0	ENST00000264731.3:c.289C>A	p.Arg97Ser	p.R97S	ENST00000264731	NM_003722.4	97	Cgc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	159	479	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112157650	112157650	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	214	411	0	ENST00000257430.4:c.1370C>A	p.Ser457Ter	p.S457*	ENST00000257430	NM_000038.5	457	tCa/tAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106733	27106734	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0049957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	217	649	0	ENST00000324856.7:c.6347_6348del	p.Arg2116ThrfsTer33	p.R2116Tfs*33	ENST00000324856	NM_006015.4	2115	cAG/c																																																																															
RAC1	5879	MSKCC	GRCh37	7	6431563	6431563	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	53	188	0	ENST00000356142.4:c.116A>G	p.Asn39Ser	p.N39S	ENST00000356142	NM_018890.3	39	aAt/aGt																																																																															
ATM	472	MSKCC	GRCh37	11	108196798	108196798	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	107	289	0	ENST00000278616.4:c.6821C>A	p.Ala2274Glu	p.A2274E	ENST00000278616	NM_000051.3	2274	gCa/gAa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119901	70119917	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCCACCCGGGGGTGC	CGGCCACCCGGGGGTGC	-			P-0049957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	281	761	0	ENST00000245479.2:c.910_926del	p.Pro304AlafsTer268	p.P304Afs*268	ENST00000245479	NM_000346.3	301	aaCGGCCACCCGGGGGTGCcg/aacg																																																																															
MED12	9968	MSKCC	GRCh37	X	70357742	70357742	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	193	460	0	ENST00000374080.3:c.5993A>G	p.Tyr1998Cys	p.Y1998C	ENST00000374080		1998	tAt/tGt																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	530	669	0	ENST00000311189.7:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000311189		61	cAg/cTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	169	298	0	ENST00000288602.6:c.1397G>A	p.Gly466Glu	p.G466E	ENST00000288602	NM_004333.4	466	gGa/gAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743858	40743858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	88	373	1	ENST00000373198.4:c.3137G>A	p.Arg1046His	p.R1046H	ENST00000373198	NM_133170.3	1046	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577047	7577047	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	510	597	0	ENST00000269305.4:c.891del	p.His297GlnfsTer48	p.H297Qfs*48	ENST00000269305	NM_001126112.2	297	caC/ca																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325911	65325911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	71	407	0	ENST00000342505.4:c.1211C>T	p.Ser404Phe	p.S404F	ENST00000342505	NM_002227.2	404	tCc/tTc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243809331	243809331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	60	265	0	ENST00000263826.5:c.293G>T	p.Trp98Leu	p.W98L	ENST00000263826	NM_005465.4	98	tGg/tTg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741900	17741900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	45	174	0	ENST00000250003.3:c.571G>C	p.Glu191Gln	p.E191Q	ENST00000250003	NM_002478.4	191	Gag/Cag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135348	30135348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	99	333	0	ENST00000331968.5:c.470C>T	p.Pro157Leu	p.P157L	ENST00000331968	NM_002742.2	157	cCa/cTa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600506	10600506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	256	526	0	ENST00000171111.5:c.1349G>T	p.Trp450Leu	p.W450L	ENST00000171111	NM_203500.1	450	tGg/tTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097206	11097206	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	361	817	0	ENST00000344626.4:c.697G>C	p.Gly233Arg	p.G233R	ENST00000344626	NM_003072.3	233	Ggc/Cgc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713874	30713874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	136	532	0	ENST00000359013.4:c.1274T>C	p.Leu425Pro	p.L425P	ENST00000359013	NM_001024847.2	425	cTt/cCt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47143017	47143017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	200	384	0	ENST00000409792.3:c.4946G>T	p.Gly1649Val	p.G1649V	ENST00000409792	NM_014159.6	1649	gGg/gTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187531137	187531137	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	69	291	0	ENST00000441802.2:c.9886G>T	p.Glu3296Ter	p.E3296*	ENST00000441802	NM_005245.3	3296	Gag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81346633	81346633	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	188	245	0	ENST00000222390.5:c.1320C>A	p.Cys440Ter	p.C440*	ENST00000222390	NM_000601.4	440	tgC/tgA																																																																															
BCOR	54880	MSKCC	GRCh37	X	39930367	39930367	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	91	379	0	ENST00000378444.4:c.3097G>T	p.Gly1033Cys	p.G1033C	ENST00000378444	NM_001123385.1	1033	Ggt/Tgt																																																																															
AR	367	MSKCC	GRCh37	X	66765842	66765842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	185	764	0	ENST00000374690.3:c.854C>A	p.Ala285Asp	p.A285D	ENST00000374690	NM_000044.3	285	gCc/gAc																																																																															
AR	367	MSKCC	GRCh37	X	66766280	66766280	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	85	425	0	ENST00000374690.3:c.1292C>A	p.Ala431Asp	p.A431D	ENST00000374690	NM_000044.3	431	gCt/gAt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123185184	123185184	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	116	287	0	ENST00000218089.9:c.1136C>A	p.Thr379Asn	p.T379N	ENST00000218089	NM_001042749.1	379	aCc/aAc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45854918	45854918	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	302	690	0	ENST00000391945.4:c.2252A>C	p.Lys751Thr	p.K751T	ENST00000391945	NM_000400.3	751	aAg/aCg																																																																															
TET1	80312	MSKCC	GRCh37	10	70405103	70405103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199844508		P-0049966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	23	552	1	ENST00000373644.4:c.2617G>A	p.Val873Ile	p.V873I	ENST00000373644	NM_030625.2	873	Gtt/Att																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157510911	157510911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	14	462	0	ENST00000346085.5:c.3686G>T	p.Gly1229Val	p.G1229V	ENST00000346085	NM_020732.3	1229	gGa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0049968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	82	377	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145770	11145770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	42	788	0	ENST00000344626.4:c.4132G>A	p.Asp1378Asn	p.D1378N	ENST00000344626	NM_003072.3	1378	Gac/Aac																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349405	89349405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	53	857	0	ENST00000301030.4:c.3545G>A	p.Arg1182Lys	p.R1182K	ENST00000301030	NM_001256183.1	1182	aGa/aAa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349497	89349497	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	33	626	0	ENST00000301030.4:c.3453G>C	p.Glu1151Asp	p.E1151D	ENST00000301030	NM_001256183.1	1151	gaG/gaC																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161673	56161673	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	26	312	0	ENST00000399503.3:c.1170G>C	p.Gln390His	p.Q390H	ENST00000399503	NM_005921.1	390	caG/caC																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	101	369	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	73	525	4	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	149	764	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	119	664	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
AXL	558	MSKCC	GRCh37	19	41743932	41743933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778012871		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	54	930	3	ENST00000301178.4:c.874dup	p.His292ProfsTer47	p.H292Pfs*47	ENST00000301178	NM_021913.4	289	-/C																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	30	322	1	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	44	331	8	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913288		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	41	386	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	115	363	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	130	711	7	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	324	892	9	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	61	830	2	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
SMO	6608	MSKCC	GRCh37	7	128843429	128843429	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs115491500		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	92	485	0	ENST00000249373.3:c.536C>T	p.Thr179Met	p.T179M	ENST00000249373	NM_005631.4	179	aCg/aTg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563296	21563296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	174	1017	0	ENST00000382592.4:c.623C>T	p.Pro208Leu	p.P208L	ENST00000382592	NM_014572.2	208	cCg/cTg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136949	64136949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	131	688	0	ENST00000334205.4:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000334205	NM_003942.2	487	cGg/cAg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	108	475	1	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	83	627	8	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
POLE	5426	MSKCC	GRCh37	12	133248860	133248860	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116260568		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	50	664	3	ENST00000320574.5:c.1735C>T	p.Arg579Cys	p.R579C	ENST00000320574	NM_006231.2	579	Cgc/Tgc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612341	1612341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	237	939	1	ENST00000344749.5:c.1678C>T	p.Arg560Trp	p.R560W	ENST00000344749	NM_001136139.2	560	Cgg/Tgg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272336	15272337	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs771517374		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	171	973	5	ENST00000263388.2:c.6102dup	p.Gly2035ArgfsTer60	p.G2035Rfs*60	ENST00000263388	NM_000435.2	2034	-/C																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686901	37686901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	118	420	1	ENST00000447079.4:c.3810del	p.Gly1271AspfsTer23	p.G1271Dfs*23	ENST00000447079	NM_015083.1	1269	Ccc/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209652	98209652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	53	703	1	ENST00000331920.6:c.3886G>A	p.Gly1296Arg	p.G1296R	ENST00000331920	NM_000264.3	1296	Gga/Aga																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020769	37020769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	31	545	0	ENST00000358127.4:c.76del	p.Val26PhefsTer3	p.V26Ffs*3	ENST00000358127	NM_001280556.1	26	Gtt/tt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99456355	99456355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	31	501	0	ENST00000268035.6:c.1672C>T	p.Pro558Ser	p.P558S	ENST00000268035	NM_000875.3	558	Ccc/Tcc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	59	892	5	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2958190	2958190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	119	718	2	ENST00000396946.4:c.2542C>T	p.Arg848Cys	p.R848C	ENST00000396946	NM_032415.4	848	Cgc/Tgc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416952	416953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	74	451	2	ENST00000399788.2:c.3597dupA	p.Gly1200ArgfsTer7	p.G1200Rfs*7	ENST00000399788	NM_001042603.1	1199	-/A																																																																															
NSD1	64324	MSKCC	GRCh37	5	176709529	176709529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	12	322	0	ENST00000439151.2:c.5956C>T	p.Arg1986Cys	p.R1986C	ENST00000439151	NM_022455.4	1986	Cgc/Tgc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413710	138413710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	131	423	2	ENST00000289153.2:c.1810delC	p.Arg604GlyfsTer4	p.R604Gfs*4	ENST00000289153	NM_006219.2	604	Cgg/gg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732911	30732911	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	65	265	0	ENST00000359013.4:c.1600-1G>T		p.X534_splice	ENST00000359013	NM_001024847.2	534																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	158	912	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	103	451	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347117	89347117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	35	725	0	ENST00000301030.4:c.5833G>A	p.Glu1945Lys	p.E1945K	ENST00000301030	NM_001256183.1	1945	Gag/Aag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907420	32907421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1253401667		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	27	266	0	ENST00000380152.3:c.1813dup	p.Ile605AsnfsTer11	p.I605Nfs*11	ENST00000380152		602	gga/ggAa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	70	529	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63845528	63845528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	23	247	0	ENST00000279873.7:c.1267C>T	p.Arg423Trp	p.R423W	ENST00000279873	NM_032199.2	423	Cgg/Tgg																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38614463	38614463	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	20	361	0	ENST00000299084.4:c.234del	p.Asp79ThrfsTer42	p.D79Tfs*42	ENST00000299084	NM_152594.2	77	Aaa/aa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133806	55133806	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77524207		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	69	440	1	ENST00000257290.5:c.1019G>A	p.Arg340Gln	p.R340Q	ENST00000257290	NM_006206.4	340	cGg/cAg																																																																															
SDHA	6389	MSKCC	GRCh37	5	228310	228310	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	12	253	0	ENST00000264932.6:c.632A>G	p.Tyr211Cys	p.Y211C	ENST00000264932	NM_004168.2	211	tAt/tGt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141572693	141572693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	114	583	1	ENST00000220592.5:c.377G>A	p.Arg126His	p.R126H	ENST00000220592	NM_012154.3	126	cGc/cAc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500436	99500436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	32	774	0	ENST00000268035.6:c.3869C>T	p.Pro1290Leu	p.P1290L	ENST00000268035	NM_000875.3	1290	cCg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218450	36218451	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	123	776	0	ENST00000222270.7:c.4235dup	p.Leu1413ProfsTer265	p.L1413Pfs*265	ENST00000222270	NM_014727.1	1410	cag/caGg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716199	243716199	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	84	490	0	ENST00000263826.5:c.995T>C	p.Leu332Pro	p.L332P	ENST00000263826	NM_005465.4	332	cTa/cCa																																																																															
REL	5966	MSKCC	GRCh37	2	61145678	61145678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	33	421	0	ENST00000295025.8:c.790C>T	p.Arg264Trp	p.R264W	ENST00000295025	NM_002908.2	264	Cgg/Tgg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63526140	63526140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	127	542	0	ENST00000307078.5:c.2486C>T	p.Pro829Leu	p.P829L	ENST00000307078	NM_004655.3	829	cCg/cTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70345918	70345918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	61	528	1	ENST00000374080.3:c.2455C>T	p.Arg819Trp	p.R819W	ENST00000374080		819	Cgg/Tgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874749	151874749	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	98	373	0	ENST00000262189.6:c.7789C>G	p.Pro2597Ala	p.P2597A	ENST00000262189	NM_170606.2	2597	Cca/Gca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212236	36212236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	167	705	1	ENST00000222270.7:c.1987G>A	p.Glu663Lys	p.E663K	ENST00000222270	NM_014727.1	663	Gaa/Aaa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103504591	103504591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	46	299	0	ENST00000355739.4:c.212G>A	p.Arg71His	p.R71H	ENST00000355739	NM_000123.3	71	cGt/cAt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31504699	31504699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	71	503	1	ENST00000344624.3:c.1631G>A	p.Arg544His	p.R544H	ENST00000344624		544	cGc/cAc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204623	128204623	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	70	733	0	ENST00000341105.2:c.818del	p.Gly273AspfsTer53	p.G273Dfs*53	ENST00000341105	NM_032638.4	273	gGa/ga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165569	47165569	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	109	519	0	ENST00000409792.3:c.557C>A	p.Pro186Gln	p.P186Q	ENST00000409792	NM_014159.6	186	cCg/cAg																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735643	204735643	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	50	335	0	ENST00000302823.3:c.444G>T	p.Gln148His	p.Q148H	ENST00000302823	NM_005214.4	148	caG/caT																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640404	3640404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	67	838	1	ENST00000294008.3:c.3235C>T	p.Pro1079Ser	p.P1079S	ENST00000294008	NM_032444.2	1079	Cca/Tca																																																																															
TERT	7015	MSKCC	GRCh37	5	1278818	1278818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	185	697	1	ENST00000310581.5:c.2224C>T	p.Arg742Cys	p.R742C	ENST00000310581	NM_198253.2	742	Cgt/Tgt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162394398	162394398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	51	384	0	ENST00000366898.1:c.670G>T	p.Val224Leu	p.V224L	ENST00000366898	NM_004562.2	224	Gta/Tta																																																																															
POLE	5426	MSKCC	GRCh37	12	133245023	133245024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	47	895	6	ENST00000320574.5:c.2091dupC	p.Phe699ValfsTer11	p.F699Vfs*11	ENST00000320574	NM_006231.2	697	-/C																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797890	45797890	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146044717		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	196	889	0	ENST00000372115.3:c.839G>A	p.Arg280His	p.R280H	ENST00000372115	NM_001048171.1	280	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108160330	108160330	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	12	195	0	ENST00000278616.4:c.4238A>C	p.Asp1413Ala	p.D1413A	ENST00000278616	NM_000051.3	1413	gAt/gCt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	495069	495069	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	61	374	0	ENST00000399788.2:c.237A>T	p.Glu79Asp	p.E79D	ENST00000399788	NM_001042603.1	79	gaA/gaT																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435212	18435212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	28	306	0	ENST00000266497.5:c.197C>A	p.Pro66His	p.P66H	ENST00000266497		66	cCc/cAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112332	115112332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	109	335	0	ENST00000257566.3:c.1408G>A	p.Ala470Thr	p.A470T	ENST00000257566	NM_016569.3	470	Gcg/Acg																																																																															
POLE	5426	MSKCC	GRCh37	12	133263889	133263889	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	108	483	0	ENST00000320574.5:c.13A>G	p.Ser5Gly	p.S5G	ENST00000320574	NM_006231.2	5	Agc/Ggc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066734	30066734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	39	363	0	ENST00000331968.5:c.2397G>A	p.Met799Ile	p.M799I	ENST00000331968	NM_002742.2	799	atG/atA																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778480	3778480	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	132	802	0	ENST00000262367.5:c.6568C>T	p.Arg2190Ter	p.R2190*	ENST00000262367	NM_004380.2	2190	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991631	72991631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	114	634	0	ENST00000268489.5:c.2414G>A	p.Arg805Gln	p.R805Q	ENST00000268489	NM_006885.3	805	cGg/cAg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942139	81942139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	83	637	2	ENST00000359376.3:c.1676G>A	p.Gly559Asp	p.G559D	ENST00000359376	NM_002661.3	559	gGc/gAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29585450	29585450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	31	477	0	ENST00000358273.4:c.4262C>T	p.Pro1421Leu	p.P1421L	ENST00000358273	NM_001042492.2	1421	cCg/cTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436091	56436092	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	151	592	0	ENST00000407977.2:c.1045dup	p.Ala349GlyfsTer94	p.A349Gfs*94	ENST00000407977		349	gcc/gGcc																																																																															
INSR	3643	MSKCC	GRCh37	19	7125355	7125355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	41	771	0	ENST00000302850.5:c.3197G>A	p.Arg1066Gln	p.R1066Q	ENST00000302850	NM_000208.2	1066	cGa/cAa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10252790	10252790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	113	703	2	ENST00000340748.4:c.3175C>A	p.Arg1059Ser	p.R1059S	ENST00000340748		1059	Cgc/Agc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288831	15288831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	109	281	0	ENST00000263388.2:c.3908C>T	p.Pro1303Leu	p.P1303L	ENST00000263388	NM_000435.2	1303	cCa/cTa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298748	15298748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	145	811	0	ENST00000263388.2:c.1550G>T	p.Arg517Met	p.R517M	ENST00000263388	NM_000435.2	517	aGg/aTg																																																																															
AXL	558	MSKCC	GRCh37	19	41763407	41763407	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	40	510	0	ENST00000301178.4:c.2209del	p.Val737Ter	p.V737*	ENST00000301178	NM_021913.4	736	Ggg/gg																																																																															
ALK	238	MSKCC	GRCh37	2	30143420	30143421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	142	594	0	ENST00000389048.3:c.105dup	p.Pro36AlafsTer22	p.P36Afs*22	ENST00000389048	NM_004304.4	35	-/G																																																																															
CASP8	841	MSKCC	GRCh37	2	202150010	202150011	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	79	538	0	ENST00000358485.4:c.1452_1453del	p.Cys485ProfsTer12	p.C485Pfs*12	ENST00000358485	NM_001080125.1	484	cTT/c																																																																															
CASP8	841	MSKCC	GRCh37	2	202151253	202151254	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	25	334	0	ENST00000358485.4:c.1557dupG	p.Lys520GlufsTer19	p.K520Efs*19	ENST00000358485	NM_001080125.1	518	atg/atGg																																																																															
EP300	2033	MSKCC	GRCh37	22	41547997	41547997	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	144	528	1	ENST00000263253.7:c.2978A>G	p.Gln993Arg	p.Q993R	ENST00000263253	NM_001429.3	993	cAg/cGg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098311	47098311	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	33	284	0	ENST00000409792.3:c.6963G>T	p.Gln2321His	p.Q2321H	ENST00000409792	NM_014159.6	2321	caG/caT																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149245706	149245707	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	132	574	0	ENST00000360632.3:c.821dup	p.Val275SerfsTer19	p.V275Sfs*19	ENST00000360632	NM_015472.4	274	cca/ccCa																																																																															
TET2	54790	MSKCC	GRCh37	4	106196873	106196873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	51	324	0	ENST00000380013.4:c.5206G>A	p.Ala1736Thr	p.A1736T	ENST00000380013	NM_001127208.2	1736	Gcc/Acc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177644	56177644	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149242419		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	99	389	1	ENST00000399503.3:c.2617G>A	p.Val873Ile	p.V873I	ENST00000399503	NM_005921.1	873	Gta/Ata																																																																															
IRF4	3662	MSKCC	GRCh37	6	397168	397168	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	112	441	0	ENST00000380956.4:c.553C>A	p.Gln185Lys	p.Q185K	ENST00000380956	NM_001195286.1	185	Cag/Aag																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324179	31324179	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	77	651	0	ENST00000412585.2:c.384del	p.Pro129ArgfsTer22	p.P129Rfs*22	ENST00000412585	NM_005514.6	128	ggG/gg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894827	101894827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	70	234	0	ENST00000374994.4:c.380C>T	p.Ala127Val	p.A127V	ENST00000374994	NM_004612.2	127	gCa/gTa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223790	53223790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	63	954	0	ENST00000375401.3:c.3569G>A	p.Cys1190Tyr	p.C1190Y	ENST00000375401	NM_004187.3	1190	tGt/tAt																																																																															
AR	367	MSKCC	GRCh37	X	66863145	66863145	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	82	577	0	ENST00000374690.3:c.1664C>A	p.Pro555Gln	p.P555Q	ENST00000374690	NM_000044.3	555	cCa/cAa																																																																															
MED12	9968	MSKCC	GRCh37	X	70352357	70352357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	66	571	1	ENST00000374080.3:c.4384C>T	p.Arg1462Cys	p.R1462C	ENST00000374080		1462	Cgc/Tgc																																																																															
MED12	9968	MSKCC	GRCh37	X	70356781	70356781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	175	691	2	ENST00000374080.3:c.5453C>T	p.Pro1818Leu	p.P1818L	ENST00000374080		1818	cCg/cTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70360643	70360643	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	49	365	0	ENST00000374080.3:c.6203A>G	p.Gln2068Arg	p.Q2068R	ENST00000374080		2068	cAg/cGg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123210228	123210228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	31	484	0	ENST00000218089.9:c.2580G>T	p.Lys860Asn	p.K860N	ENST00000218089	NM_001042749.1	860	aaG/aaT																																																																															
STAG2	10735	MSKCC	GRCh37	X	123215368	123215368	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	19	348	0	ENST00000218089.9:c.2914A>G	p.Met972Val	p.M972V	ENST00000218089	NM_001042749.1	972	Atg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	227	357	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	140	559	2	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248444	212248444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	78	296	1	ENST00000342788.4:c.3823C>T	p.Arg1275Trp	p.R1275W	ENST00000342788	NM_005235.2	1275	Cgg/Tgg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099468	157099470	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-	rs1429292576		P-0049565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	88	378	2	ENST00000346085.5:c.413_415del	p.Asn138del	p.N138del	ENST00000346085	NM_020732.3	135	tcCAAc/tcc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732958	30732958	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	88	321	0	ENST00000359013.4:c.1646A>G	p.Asp549Gly	p.D549G	ENST00000359013	NM_001024847.2	549	gAc/gGc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73334771	73334771	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	61	177	0	ENST00000377767.4:c.2689G>T	p.Glu897Ter	p.E897*	ENST00000377767	NM_014953.3	897	Gaa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244249	153244250	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0049565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	65	273	0	ENST00000281708.4:c.1907_1908del	p.Phe636CysfsTer7	p.F636Cfs*7	ENST00000281708	NM_033632.3	636	tTT/t																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268163	153268163	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	79	287	1	ENST00000281708.4:c.645del	p.Asn216MetfsTer23	p.N216Mfs*23	ENST00000281708	NM_033632.3	215	gcC/gc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324102	31324111	+	frameshift_variant	Frame_Shift_Del	DEL	AGGTCCTCGT	AGGTCCTCGT	-			P-0049565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	52	376	0	ENST00000412585.2:c.452_461del	p.Asn151SerfsTer60	p.N151Sfs*60	ENST00000412585	NM_005514.6	151	aACGAGGACCTg/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0049567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	506	662	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																															
APC	324	MSKCC	GRCh37	5	112175360	112175360	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	152	184	0	ENST00000257430.4:c.4069G>T	p.Gly1357Ter	p.G1357*	ENST00000257430	NM_000038.5	1357	Gga/Tga																																																																															
JAK3	3718	MSKCC	GRCh37	19	17951085	17951085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	338	463	0	ENST00000458235.1:c.1208G>A	p.Arg403His	p.R403H	ENST00000458235	NM_000215.3	403	cGc/cAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912200	114912200	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	199	385	0	ENST00000543371.1:c.1269+1G>A		p.X423_splice	ENST00000543371	NM_001198531.1	423																																																																																
GLI1	2735	MSKCC	GRCh37	12	57861180	57861180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	202	436	0	ENST00000228682.2:c.977C>T	p.Thr326Met	p.T326M	ENST00000228682	NM_005269.2	326	aCg/aTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717727	89717727	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	143	327	0	ENST00000371953.3:c.752G>C	p.Gly251Ala	p.G251A	ENST00000371953	NM_000314.4	251	gGt/gCt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	protein_altering_variant	In_Frame_Ins	INS	-	-	GTT			P-0049568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	29	543	0	ENST00000275493.2:c.2308_2309insGTT	p.Asp770delinsGlyTyr	p.D770delinsGY	ENST00000275493	NM_005228.3	770	gac/gGTTac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0049570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	141	530	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	25	266	0	ENST00000257430.4:c.4473dupT	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8501056	8501056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	47	194	0	ENST00000356435.5:c.1826C>T	p.Pro609Leu	p.P609L	ENST00000356435		609	cCg/cTg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206647813	206647813	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs554685342		P-0049570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	39	354	0	ENST00000367120.3:c.227C>T	p.Thr76Met	p.T76M	ENST00000367120	NM_014002.3	76	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112174022	112174022	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	29	272	0	ENST00000257430.4:c.2731G>T	p.Glu911Ter	p.E911*	ENST00000257430	NM_000038.5	911	Gaa/Taa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0049572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	36	348	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0049572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	29	380	1	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71945355	71945355	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	47	586	0	ENST00000298229.2:c.2243T>C	p.Ile748Thr	p.I748T	ENST00000298229	NM_001567.3	748	aTt/aCt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492895	56492895	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	40	297	0	ENST00000407977.2:c.44G>A	p.Trp15Ter	p.W15*	ENST00000407977		15	tGg/tAg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	144	590	2	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	60	216	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	60	196	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	172	628	0	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	59	168	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	77	272	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	58	183	0	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
MGA	23269	MSKCC	GRCh37	15	42042483	42042483	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	97	368	0	ENST00000219905.7:c.6682delA	p.Ser2228ValfsTer10	p.S2228Vfs*10	ENST00000219905	NM_001164273.1	2226	ggA/gg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	193	463	3	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45860604	45860604	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	226	705	0	ENST00000391945.4:c.1403C>A	p.Pro468His	p.P468H	ENST00000391945	NM_000400.3	468	cCc/cAc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561424	9561424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	102	355	0	ENST00000353224.5:c.358G>A	p.Ala120Thr	p.A120T	ENST00000353224	NM_177990.2	120	Gcg/Acg																																																																															
MGA	23269	MSKCC	GRCh37	15	42054541	42054541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	105	288	0	ENST00000219905.7:c.7731delA	p.Asp2578ThrfsTer10	p.D2578Tfs*10	ENST00000219905	NM_001164273.1	2575	agA/ag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438211	49438211	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	146	416	2	ENST00000301067.7:c.5058delA	p.Lys1686AsnfsTer36	p.K1686Nfs*36	ENST00000301067	NM_003482.3	1686	aaA/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323362	31323363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	82	318	0	ENST00000412585.2:c.626dupC	p.Thr211AspfsTer10	p.T211Dfs*10	ENST00000412585	NM_005514.6	209	cca/ccCa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211898	36211899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775294431		P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	155	667	2	ENST00000222270.7:c.1656dup	p.Lys553GlnfsTer46	p.K553Qfs*46	ENST00000222270	NM_014727.1	550	gac/gaCc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45858047	45858047	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142568756		P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	178	595	0	ENST00000391945.4:c.1606G>A	p.Val536Met	p.V536M	ENST00000391945	NM_000400.3	536	Gtg/Atg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998164	169998165	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	119	352	0	ENST00000295797.4:c.861dup	p.Glu288ArgfsTer4	p.E288Rfs*4	ENST00000295797	NM_002740.5	285	-/A																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250430	26250431	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs778901635		P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	112	405	0	ENST00000446824.2:c.403_404del	p.Arg135GlyfsTer?	p.R135Gfs*?	ENST00000446824	NM_021018.2	135	AGg/g																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323253	31323253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	98	279	0	ENST00000412585.2:c.736G>A	p.Glu246Lys	p.E246K	ENST00000412585	NM_005514.6	246	Gag/Aag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976953	18976953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	119	441	0	ENST00000262803.5:c.3338C>T	p.Thr1113Met	p.T1113M	ENST00000262803	NM_002911.3	1113	aCg/aTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42796340	42796340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	250	638	1	ENST00000575354.2:c.2989C>A	p.Leu997Met	p.L997M	ENST00000575354	NM_015125.3	997	Ctg/Atg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999153	100999153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	142	656	2	ENST00000325455.5:c.649G>A	p.Ala217Thr	p.A217T	ENST00000325455	NM_001202474.3	217	Gct/Act																																																																															
CBL	867	MSKCC	GRCh37	11	119156139	119156140	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	159	455	0	ENST00000264033.4:c.1808dup	p.Ser604LysfsTer4	p.S604Kfs*4	ENST00000264033	NM_005188.3	602	gcc/gCcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446370	49446371	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	168	497	0	ENST00000301067.7:c.1234_1235insA	p.Leu412HisfsTer4	p.L412Hfs*4	ENST00000301067	NM_003482.3	412	ctg/cAtg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81934321	81934321	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	202	534	1	ENST00000359376.3:c.1298C>A	p.Pro433His	p.P433H	ENST00000359376	NM_002661.3	433	cCc/cAc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39609350	39609350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	87	253	0	ENST00000262039.4:c.1652G>A	p.Arg551Gln	p.R551Q	ENST00000262039	NM_002647.2	551	cGg/cAg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626032	12626032	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	120	355	0	ENST00000251849.4:c.1928del	p.Pro643ArgfsTer8	p.P643Rfs*8	ENST00000251849	NM_002880.3	643	cCg/cg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437234	52437234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	201	552	0	ENST00000460680.1:c.1810G>A	p.Val604Met	p.V604M	ENST00000460680	NM_004656.3	604	Gtg/Atg																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72873689	72873690	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	112	236	0	ENST00000325599.8:c.612dup	p.Glu205Ter	p.E205*	ENST00000325599	NM_018130.2	204	-/T																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911050	29911051	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	257	842	0	ENST00000376809.5:c.352_353del	p.Thr118HisfsTer58	p.T118Hfs*58	ENST00000376809	NM_002116.7	117	CAc/c																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528718	157528718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	111	404	1	ENST00000346085.5:c.6443C>T	p.Ala2148Val	p.A2148V	ENST00000346085	NM_020732.3	2148	gCc/gTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860428	151860428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	141	394	0	ENST00000262189.6:c.10234C>T	p.Arg3412Trp	p.R3412W	ENST00000262189	NM_170606.2	3412	Cgg/Tgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884485	151884485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	82	264	0	ENST00000262189.6:c.4870G>T	p.Gly1624Ter	p.G1624*	ENST00000262189	NM_170606.2	1624	Gga/Tga																																																																															
STAG2	10735	MSKCC	GRCh37	X	123181236	123181236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	29	193	0	ENST00000218089.9:c.700G>A	p.Ala234Thr	p.A234T	ENST00000218089	NM_001042749.1	234	Gca/Aca																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67575451	67575451	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	106	270	0	ENST00000274335.5:c.526del	p.Met176Ter	p.M176*	ENST00000274335		175	gAa/ga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711902	89711902	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	152	451	0	ENST00000371953.3:c.520T>A	p.Tyr174Asn	p.Y174N	ENST00000371953	NM_000314.4	174	Tat/Aat																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31395587	31395587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	118	677	1	ENST00000328111.2:c.2440C>T	p.His814Tyr	p.H814Y	ENST00000328111	NM_006892.3	814	Cac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112177121	112177121	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	106	346	0	ENST00000257430.4:c.5833delG	p.Ala1945GlnfsTer25	p.A1945Qfs*25	ENST00000257430	NM_000038.5	1944	Ggg/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	125	476	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TET2	54790	MSKCC	GRCh37	4	106156069	106156069	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	73	338	0	ENST00000380013.4:c.970C>T	p.Gln324Ter	p.Q324*	ENST00000380013	NM_001127208.2	324	Caa/Taa																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735585	204735585	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	121	418	1	ENST00000302823.3:c.386G>T	p.Cys129Phe	p.C129F	ENST00000302823	NM_005214.4	129	tGc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112173302	112173303	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0049602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	51	241	0	ENST00000257430.4:c.2013_2014del	p.His672Ter	p.H672*	ENST00000257430	NM_000038.5	671	TCt/t																																																																															
EZH2	2146	MSKCC	GRCh37	7	148524343	148524343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	29	323	1	ENST00000320356.2:c.641C>T	p.Pro214Leu	p.P214L	ENST00000320356	NM_004456.4	214	cCa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	93	679	2	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	59	472	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs760640852		P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	72	442	1	ENST00000304494.5:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000304494	NM_000077.4	74	Gac/Tac																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439922	51439922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	31	186	0	ENST00000262662.1:c.487G>A	p.Gly163Arg	p.G163R	ENST00000262662		163	Gga/Aga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106424	27106424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	73	444	0	ENST00000324856.7:c.6035G>A	p.Gly2012Asp	p.G2012D	ENST00000324856	NM_006015.4	2012	gGc/gAc																																																																															
STK11	6794	MSKCC	GRCh37	19	1222986	1222986	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	62	519	0	ENST00000326873.7:c.923G>C	p.Trp308Ser	p.W308S	ENST00000326873	NM_000455.4	308	tGg/tCg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906310	50906310	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	62	627	0	ENST00000440232.2:c.971G>T	p.Gly324Val	p.G324V	ENST00000440232	NM_002691.3	324	gGc/gTc																																																																															
ALK	238	MSKCC	GRCh37	2	29416373	29416373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	93	609	0	ENST00000389048.3:c.4580C>T	p.Pro1527Leu	p.P1527L	ENST00000389048	NM_004304.4	1527	cCa/cTa																																																																															
ACVR1	90	MSKCC	GRCh37	2	158594996	158594996	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	64	273	0	ENST00000263640.3:c.1351G>C	p.Asp451His	p.D451H	ENST00000263640	NM_001105.4	451	Gat/Cat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927456	178927456	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	48	269	0	ENST00000263967.3:c.1219T>C	p.Cys407Arg	p.C407R	ENST00000263967	NM_006218.2	407	Tgc/Cgc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912172	29912172	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	75	286	0	ENST00000376809.5:c.893G>A	p.Trp298Ter	p.W298*	ENST00000376809	NM_002116.7	298	tGg/tAg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932020	39932020	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	46	573	0	ENST00000378444.4:c.2579G>T	p.Gly860Val	p.G860V	ENST00000378444	NM_001123385.1	860	gGg/gTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034487	47034487	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	79	521	0	ENST00000329236.7:c.341A>G	p.Asn114Ser	p.N114S	ENST00000329236	NM_001204466.1	114	aAt/aGt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410589	63410589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	44	619	1	ENST00000330258.3:c.2578C>A	p.Gln860Lys	p.Q860K	ENST00000330258	NM_152424.3	860	Caa/Aaa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411918	63411918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	47	668	0	ENST00000330258.3:c.1249C>G	p.Pro417Ala	p.P417A	ENST00000330258	NM_152424.3	417	Cca/Gca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518361	8518363	+	missense_variant	Missense_Mutation	ONP	CCC	CCC	ACA			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	19	193	0	ENST00000356435.5:c.1028_1030delinsTGT	p.Trp343_Asp344delinsLeuTyr	p.W343_D344delinsLY	ENST00000356435		343	tGGGac/tTGTac																																																																															
ESR1	2099	MSKCC	GRCh37	6	152415537	152415537	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	94	426	0	ENST00000206249.3:c.1387T>C	p.Ser463Pro	p.S463P	ENST00000206249	NM_000125.3	463	Tcc/Ccc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	119	516	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	44	296	0	ENST00000263967.3:c.3132T>A	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaA																																																																															
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0049605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	109	534	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953011	2953011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	125	701	3	ENST00000396946.4:c.2929G>A	p.Val977Met	p.V977M	ENST00000396946	NM_032415.4	977	Gtg/Atg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118820	115118821	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0049605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	102	314	0	ENST00000257566.3:c.520_521del	p.Gly174Ter	p.G174*	ENST00000257566	NM_016569.3	174	GGt/t																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120818	115120818	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	101	510	0	ENST00000257566.3:c.188del	p.Pro63ArgfsTer25	p.P63Rfs*25	ENST00000257566	NM_016569.3	63	cCg/cg																																																																															
ATR	545	MSKCC	GRCh37	3	142188291	142188291	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	36	333	0	ENST00000350721.4:c.6440C>A	p.Ser2147Tyr	p.S2147Y	ENST00000350721	NM_001184.3	2147	tCt/tAt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149450084	149450084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	126	629	0	ENST00000286301.3:c.1133G>A	p.Arg378His	p.R378H	ENST00000286301	NM_005211.3	378	cGc/cAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76939895	76939895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	39	412	0	ENST00000373344.5:c.853G>A	p.Glu285Lys	p.E285K	ENST00000373344	NM_000489.3	285	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68842404	68842404	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AG			P-0049605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	180	461	0	ENST00000261769.5:c.465delinsAG	p.Asp155GlufsTer13	p.D155Efs*13	ENST00000261769	NM_004360.3	155	gaC/gaAG																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	31	510	2	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
MED12	9968	MSKCC	GRCh37	X	70354226	70354226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	60	341	2	ENST00000374080.3:c.4637C>T	p.Thr1546Met	p.T1546M	ENST00000374080		1546	aCg/aTg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs80357522		P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	23	468	1	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696450	47696450	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	23	405	0	ENST00000347630.2:c.373T>G	p.Phe125Val	p.F125V	ENST00000347630	NM_001007230.1	125	Ttt/Gtt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3642785	3642785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	61	774	0	ENST00000294008.3:c.2242G>A	p.Ala748Thr	p.A748T	ENST00000294008	NM_032444.2	748	Gcc/Acc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	48	900	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434005	49434005	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	34	859	1	ENST00000301067.7:c.7548del	p.Asn2517IlefsTer26	p.N2517Ifs*26	ENST00000301067	NM_003482.3	2516	ccC/cc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458306	120458306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	30	675	0	ENST00000256646.2:c.7039C>T	p.Arg2347Cys	p.R2347C	ENST00000256646	NM_024408.3	2347	Cgt/Tgt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272146	15272146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	53	861	3	ENST00000263388.2:c.6293C>T	p.Thr2098Met	p.T2098M	ENST00000263388	NM_000435.2	2098	aCg/aTg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798133	45798133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	58	801	0	ENST00000372115.3:c.676G>A	p.Ala226Thr	p.A226T	ENST00000372115	NM_001048171.1	226	Gca/Aca																																																																															
TET1	80312	MSKCC	GRCh37	10	70406295	70406295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	24	470	0	ENST00000373644.4:c.3809C>T	p.Thr1270Met	p.T1270M	ENST00000373644	NM_030625.2	1270	aCg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431648	49431648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	46	838	0	ENST00000301067.7:c.9491G>A	p.Arg3164Gln	p.R3164Q	ENST00000301067	NM_003482.3	3164	cGg/cAg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43713238	43713238	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1273385388		P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	71	756	0	ENST00000382044.4:c.4235G>A	p.Arg1412Gln	p.R1412Q	ENST00000382044	NM_001141980.1	1412	cGg/cAg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347758	347758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	41	904	1	ENST00000262320.3:c.1748G>T	p.Gly583Val	p.G583V	ENST00000262320	NM_003502.3	583	gGc/gTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831718	72831718	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	32	572	0	ENST00000268489.5:c.4863A>C	p.Gln1621His	p.Q1621H	ENST00000268489	NM_006885.3	1621	caA/caC																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845816	72845838	+	frameshift_variant	Frame_Shift_Del	DEL	GATCTCCTCAGCTGTTTTTGGTC	GATCTCCTCAGCTGTTTTTGGTC	-			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	33	536	1	ENST00000268489.5:c.3629_3651del	p.Arg1210GlnfsTer15	p.R1210Qfs*15	ENST00000268489	NM_006885.3	1210	cGACCAAAAACAGCTGAGGAGATC/c																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78933980	78933980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	28	704	0	ENST00000306801.3:c.3580G>A	p.Asp1194Asn	p.D1194N	ENST00000306801	NM_020761.2	1194	Gac/Aac																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313353	30313353	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	23	489	0	ENST00000262643.3:c.953G>A	p.Gly318Glu	p.G318E	ENST00000262643	NM_001238.2	318	gGg/gAg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264164	46264164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	16	278	0	ENST00000371998.3:c.1211C>T	p.Ser404Leu	p.S404L	ENST00000371998		404	tCg/tTg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185190938	185190938	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	56	710	0	ENST00000265026.3:c.1823del	p.Asn608ThrfsTer56	p.N608Tfs*56	ENST00000265026	NM_004721.4	607	Aaa/aa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873395	151873397	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	11	286	0	ENST00000262189.6:c.9141_9143del	p.Leu3048del	p.L3048del	ENST00000262189	NM_170606.2	3047	ctTCTa/cta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0049610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	203	297	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	166	646	1	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																																																															
ATM	472	MSKCC	GRCh37	11	108114690	108114691	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0049610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	17	208	0	ENST00000278616.4:c.510_511del	p.Tyr171LeufsTer13	p.Y171Lfs*13	ENST00000278616	NM_000051.3	169	tcTGtg/tctg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30132954	30132954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	138	567	0	ENST00000331968.5:c.647G>A	p.Arg216His	p.R216H	ENST00000331968	NM_002742.2	216	cGc/cAc																																																																															
SRC	6714	MSKCC	GRCh37	20	36026245	36026245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1230	94	1014	1	ENST00000358208.4:c.847G>A	p.Glu283Lys	p.E283K	ENST00000358208		283	Gag/Aag																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231828	36231829	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	699	680	0	ENST00000300305.3:c.555dup	p.Val186SerfsTer27	p.V186Sfs*27	ENST00000300305		185	-/A																																																																															
FANCC	2176	MSKCC	GRCh37	9	97888824	97888824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	79	502	1	ENST00000289081.3:c.883G>A	p.Asp295Asn	p.D295N	ENST00000289081	NM_000136.2	295	Gat/Aat																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411641	63411641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	100	837	0	ENST00000330258.3:c.1526A>G	p.Tyr509Cys	p.Y509C	ENST00000330258	NM_152424.3	509	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0049612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	119	357	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0049612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	304	690	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970899	21970899	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0049612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	329	677	0	ENST00000304494.5:c.457+2T>A		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48604791	48604798	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTACTT	AAGTACTT	G			P-0049612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	107	306	0	ENST00000342988.3:c.1613_1620delinsG	p.Glu538GlyfsTer12	p.E538Gfs*12	ENST00000342988	NM_005359.5	538	gAAGTACTT/gG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0049670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	368	592	1	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858298	9858298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	112	361	0	ENST00000330684.3:c.3103G>A	p.Asp1035Asn	p.D1035N	ENST00000330684	NM_001134407.1	1035	Gat/Aat																																																																															
RET	5979	MSKCC	GRCh37	10	43610076	43610076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	189	673	2	ENST00000355710.3:c.2028C>A	p.Phe676Leu	p.F676L	ENST00000355710	NM_020975.4	676	ttC/ttA																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811652	102811652	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	189	620	1	ENST00000307046.8:c.532C>A	p.Gln178Lys	p.Q178K	ENST00000307046	NM_001111285.1	178	Cag/Aag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3656701	3656701	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0049670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	204	577	0	ENST00000294008.3:c.536-2A>T		p.X179_splice	ENST00000294008	NM_032444.2	179																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72829870	72829870	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	221	575	0	ENST00000268489.5:c.6711G>C	p.Glu2237Asp	p.E2237D	ENST00000268489	NM_006885.3	2237	gaG/gaC																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37872587	37872587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	248	686	1	ENST00000269571.5:c.1547C>T	p.Ala516Val	p.A516V	ENST00000269571		516	gCc/gTc																																																																															
KIT	3815	MSKCC	GRCh37	4	55561855	55561855	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	81	311	0	ENST00000288135.5:c.245G>A	p.Trp82Ter	p.W82*	ENST00000288135	NM_000222.2	82	tGg/tAg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280008	66280008	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	43	187	0	ENST00000273854.3:c.1681C>G	p.Pro561Ala	p.P561A	ENST00000273854	NM_004439.5	561	Cca/Gca																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981584	70981584	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	264	885	0	ENST00000276594.2:c.512C>G	p.Pro171Arg	p.P171R	ENST00000276594	NM_024504.3	171	cCt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	20	399	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	36	639	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	89	319	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0049678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	181	709	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36938263	36938263	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138558210		P-0049678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	250	893	0	ENST00000361632.4:c.698G>A	p.Arg233Gln	p.R233Q	ENST00000361632		233	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581279	48581280	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0049678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	134	469	0	ENST00000342988.3:c.584dup	p.Tyr195Ter	p.Y195*	ENST00000342988	NM_005359.5	195	tac/tAac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106242	27106250	+	frameshift_variant	Frame_Shift_Del	DEL	CATCAAGAT	CATCAAGAT	A			P-0049678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	109	553	0	ENST00000324856.7:c.5853_5861delinsA	p.Asn1951LysfsTer9	p.N1951Kfs*9	ENST00000324856	NM_006015.4	1951	aaCATCAAGATc/aaAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	52	536	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220409	1220409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	98	854	1	ENST00000326873.7:c.502C>T	p.His168Tyr	p.H168Y	ENST00000326873	NM_000455.4	168	Cat/Tat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912277	32912277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	42	587	0	ENST00000380152.3:c.3785C>T	p.Ser1262Leu	p.S1262L	ENST00000380152		1262	tCa/tTa																																																																															
STK40	83931	MSKCC	GRCh37	1	36814313	36814313	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	24	591	0	ENST00000373129.3:c.727G>T	p.Asp243Tyr	p.D243Y	ENST00000373129	NM_032017.1	243	Gac/Tac																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366828	40366828	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	27	644	0	ENST00000397332.2:c.369C>A	p.Asp123Glu	p.D123E	ENST00000397332	NM_001033082.2	123	gaC/gaA																																																																															
FLT1	2321	MSKCC	GRCh37	13	28882982	28882982	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	66	499	0	ENST00000282397.4:c.3718G>T	p.Asp1240Tyr	p.D1240Y	ENST00000282397	NM_002019.4	1240	Gat/Tat																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3808018	3808018	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	35	450	1	ENST00000262367.5:c.3401A>G	p.Asp1134Gly	p.D1134G	ENST00000262367	NM_004380.2	1134	gAc/gGc																																																																															
RARA	5914	MSKCC	GRCh37	17	38508206	38508206	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	20	604	0	ENST00000254066.5:c.516del	p.Glu173SerfsTer8	p.E173Sfs*8	ENST00000254066	NM_000964.3	172	Ccc/cc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39550397	39550397	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	40	313	0	ENST00000262039.4:c.508G>T	p.Asp170Tyr	p.D170Y	ENST00000262039	NM_002647.2	170	Gat/Tat																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38942936	38942936	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	31	313	0	ENST00000357387.3:c.5051A>T	p.Gln1684Leu	p.Q1684L	ENST00000357387	NM_152756.3	1684	cAa/cTa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467847	50467847	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	35	633	0	ENST00000331340.3:c.1082C>G	p.Ser361Cys	p.S361C	ENST00000331340	NM_006060.4	361	tCc/tGc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508546	106508546	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	30	510	0	ENST00000359195.3:c.540G>T	p.Leu180Phe	p.L180F	ENST00000359195	NM_002649.2	180	ttG/ttT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045688	47045689	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	T			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	48	861	0	ENST00000329236.7:c.2335_2336delinsT	p.Gly779SerfsTer29	p.G779Sfs*29	ENST00000329236	NM_001204466.1	779	GGc/Tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0049802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	8	458	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0049802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	50	616	0	ENST00000269305.4:c.376-2A>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
RET	5979	MSKCC	GRCh37	10	43613871	43613871	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	40	754	0	ENST00000355710.3:c.2335C>A	p.Leu779Met	p.L779M	ENST00000355710	NM_020975.4	779	Ctg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0049787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	111	633	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0049789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	211	583	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045009	47045009	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	182	949	0	ENST00000329236.7:c.2101C>T	p.Gln701Ter	p.Q701*	ENST00000329236	NM_001204466.1	701	Cag/Tag																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281768	49281768	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	345	860	0	ENST00000282018.3:c.815C>G	p.Thr272Arg	p.T272R	ENST00000282018	NM_020377.2	272	aCg/aGg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662103	227662103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	397	752	1	ENST00000305123.5:c.1352G>T	p.Gly451Val	p.G451V	ENST00000305123	NM_005544.2	451	gGc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	71	181	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	117	374	0				ENST00000310581	NM_198253.2																																																																																	
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0048720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	171	226	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175561	112175561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	92	215	0	ENST00000257430.4:c.4271del	p.Pro1424GlnfsTer49	p.P1424Qfs*49	ENST00000257430	NM_000038.5	1424	Cca/ca																																																																															
EP300	2033	MSKCC	GRCh37	22	41526008	41526008	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0048720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	137	155	0	ENST00000263253.7:c.1282+1G>A		p.X428_splice	ENST00000263253	NM_001429.3	428																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27092711	27092711	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0048720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	115	233	0	ENST00000324856.7:c.2733-1G>C		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49424957	49424957	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0048720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	157	783	1	ENST00000301067.7:c.13530+1G>A		p.X4510_splice	ENST00000301067	NM_003482.3	4510																																																																																
CHEK2	11200	MSKCC	GRCh37	22	29099491	29099492	+	splice_donor_variant	Splice_Site	INS	-	-	CAATTCC			P-0048720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	90	149	0	ENST00000328354.6:c.903_908+1dup		p.X301_splice	ENST00000328354	NM_007194.3	301																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			440	146	388	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0048866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			183	117	325	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098815	178098823	+	inframe_deletion	In_Frame_Del	DEL	TCTAGTTGT	TCTAGTTGT	-			P-0048866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			575	203	566	0	ENST00000397062.3:c.222_230del	p.Leu74_Asp77delinsPhe	p.L74_D77delinsF	ENST00000397062	NM_006164.4	74	ttACAACTAGAt/ttt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603120	48603120	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	158	483	0	ENST00000342988.3:c.1421C>G	p.Ser474Ter	p.S474*	ENST00000342988	NM_005359.5	474	tCa/tGa																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944967	31944967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			572	151	645	1	ENST00000340398.3:c.134C>A	p.Thr45Asn	p.T45N	ENST00000340398	NM_001013699.2	45	aCc/aAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436567	110436567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			857	243	1070	1	ENST00000375856.3:c.1834C>T	p.Leu612Phe	p.L612F	ENST00000375856	NM_003749.2	612	Ctc/Ttc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43784585	43784585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			514	89	500	0	ENST00000382044.4:c.89C>T	p.Ser30Phe	p.S30F	ENST00000382044	NM_001141980.1	30	tCt/tTt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43784619	43784619	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			531	94	464	0	ENST00000382044.4:c.55C>G	p.Gln19Glu	p.Q19E	ENST00000382044	NM_001141980.1	19	Cag/Gag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021137	31021137	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			601	207	600	1	ENST00000375687.4:c.1136A>T	p.Glu379Val	p.E379V	ENST00000375687	NM_015338.5	379	gAg/gTg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729954	41729954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			552	192	699	0	ENST00000242208.4:c.575C>T	p.Ala192Val	p.A192V	ENST00000242208	NM_002192.2	192	gCc/gTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040762	47040763	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			804	224	916	0	ENST00000329236.7:c.1164dup	p.Gly389TrpfsTer51	p.G389Wfs*51	ENST00000329236	NM_001204466.1	388	cct/ccTt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061113	38061120	+	frameshift_variant	Frame_Shift_Del	DEL	CTCAGGGC	CTCAGGGC	-			P-0049584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	55	394	1	ENST00000250448.2:c.869_876del	p.Gly290GlufsTer10	p.G290Efs*10	ENST00000250448	NM_004496.3	290	gGCCCTGAG/g																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123243268	123243268	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	26	701	0	ENST00000358487.5:c.2245A>C	p.Thr749Pro	p.T749P	ENST00000358487	NM_000141.4	749	Acg/Ccg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753044	42753044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	111	854	0	ENST00000222329.4:c.1220G>A	p.Gly407Asp	p.G407D	ENST00000222329	NM_006494.2	407	gGc/gAc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753059	42753059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	113	839	0	ENST00000222329.4:c.1205G>A	p.Ser402Asn	p.S402N	ENST00000222329	NM_006494.2	402	aGc/aAc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753130	42753130	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	114	812	0	ENST00000222329.4:c.1134G>C	p.Lys378Asn	p.K378N	ENST00000222329	NM_006494.2	378	aaG/aaC																																																																															
ERF	2077	MSKCC	GRCh37	19	42754580	42754580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	115	785	0	ENST00000222329.4:c.160G>A	p.Glu54Lys	p.E54K	ENST00000222329	NM_006494.2	54	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0049586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	177	346	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	305	895	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856655	111856655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	178	573	0	ENST00000341259.2:c.706G>A	p.Val236Met	p.V236M	ENST00000341259	NM_005475.2	236	Gtg/Atg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259504	16259528	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCCTTCTGAGGAAGGAATGGAGA	CAGCCTTCTGAGGAAGGAATGGAGA	-			P-0049586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	143	584	0	ENST00000375759.3:c.6772_6796del	p.Pro2258MetfsTer87	p.P2258Mfs*87	ENST00000375759	NM_015001.2	2257	CAGCCTTCTGAGGAAGGAATGGAGAca/ca																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004563	16004563	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0049586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	110	397	0	ENST00000268712.3:c.2690+1G>A		p.X897_splice	ENST00000268712	NM_006311.3	897																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153245451	153245451	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	153	565	0	ENST00000281708.4:c.1740C>G	p.His580Gln	p.H580Q	ENST00000281708	NM_033632.3	580	caC/caG																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662561	117662561	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0049586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	58	378	0	ENST00000368508.3:c.4902+2T>C		p.X1634_splice	ENST00000368508	NM_002944.2	1634																																																																																
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACCCCC			P-0049728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	316	631	0	ENST00000275493.2:c.2311_2319dup	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	gac/gACAACCCCCac																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0049728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	151	682	1	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
MET	4233	MSKCC	GRCh37	7	116397807	116397807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	74	351	0	ENST00000397752.3:c.2081G>A	p.Gly694Glu	p.G694E	ENST00000397752	NM_000245.2	694	gGa/gAa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0049730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	130	145	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657622	37657623	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGAATAC			P-0049730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	33	165	0	ENST00000447079.4:c.2542_2549dup	p.Cys850TrpfsTer21	p.C850Wfs*21	ENST00000447079	NM_015083.1	847	ttg/tTGGAATACtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578453	7578453	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	85	824	0	ENST00000269305.4:c.477del	p.Met160TrpfsTer10	p.M160Wfs*10	ENST00000269305	NM_001126112.2	159	gcC/gc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115836	8115837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCCTCTCCAGACACATGTCCTCCCTGA			P-0049732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	76	604	0	ENST00000346208.3:c.1186_1213dup	p.His405ProfsTer111	p.H405Pfs*111	ENST00000346208		394	-/GCCCTCTCCAGACACATGTCCTCCCTGA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720803	89720804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	11	34	0	ENST00000371953.3:c.955dup	p.Thr319AsnfsTer6	p.T319Nfs*6	ENST00000371953	NM_000314.4	318	-/A																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110108	115110108	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0049733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	122	541	0	ENST00000257566.3:c.1771-1G>A		p.X591_splice	ENST00000257566	NM_016569.3	591																																																																																
CDH1	999	MSKCC	GRCh37	16	68849499	68849499	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	131	487	0	ENST00000261769.5:c.1402del	p.Thr468ProfsTer13	p.T468Pfs*13	ENST00000261769	NM_004360.3	468	Acc/cc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62319730	62319730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	109	572	0	ENST00000508582.2:c.1785G>T	p.Glu595Asp	p.E595D	ENST00000508582		595	gaG/gaT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0049736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	240	384	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0049736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	175	451	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0049736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	36	449	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543781	212543781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	131	353	1	ENST00000342788.4:c.1618G>A	p.Asp540Asn	p.D540N	ENST00000342788	NM_005235.2	540	Gat/Aat																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134644679	134644679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	47	445	0	ENST00000398015.3:c.80C>A	p.Thr27Lys	p.T27K	ENST00000398015	NM_004441.4	27	aCg/aAg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115971	8115972	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	249	414	1	ENST00000346208.3:c.1318dup	p.Thr440AsnfsTer67	p.T440Nfs*67	ENST00000346208		439	-/A																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416438	49416438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	60	561	0	ENST00000301067.7:c.16273G>A	p.Glu5425Lys	p.E5425K	ENST00000301067	NM_003482.3	5425	Gag/Aag																																																																															
CBFB	865	MSKCC	GRCh37	16	67070623	67070624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0049736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	58	235	0	ENST00000412916.2:c.251_252dup	p.Tyr85SerfsTer5	p.Y85Sfs*5	ENST00000412916		83	cga/cGAga																																																																															
MSH2	4436	MSKCC	GRCh37	2	47656906	47656906	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	32	254	0	ENST00000233146.2:c.1102G>C	p.Glu368Gln	p.E368Q	ENST00000233146	NM_000251.2	368	Gaa/Caa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028885	47028885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	46	371	0	ENST00000329236.7:c.189G>T	p.Glu63Asp	p.E63D	ENST00000329236	NM_001204466.1	63	gaG/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	96	678	0	ENST00000269305.4:c.880delG	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	294	Gag/ag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575200	48575200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	37	277	0	ENST00000342988.3:c.394C>T	p.His132Tyr	p.H132Y	ENST00000342988	NM_005359.5	132	Cac/Tac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0049744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	378	486	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0049744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	120	434	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045016	47045016	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0049744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	330	692	0	ENST00000329236.7:c.2108C>G	p.Ser703Ter	p.S703*	ENST00000329236	NM_001204466.1	703	tCa/tGa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572538	64572538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	134	613	0	ENST00000337652.1:c.1333C>T	p.Leu445Phe	p.L445F	ENST00000337652	NM_130803.2	445	Ctt/Ttt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341347	89341354	+	frameshift_variant	Frame_Shift_Del	DEL	AGGATACG	AGGATACG	-			P-0049744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	239	473	0	ENST00000301030.4:c.7581_7588del	p.Ile2527MetfsTer2	p.I2527Mfs*2	ENST00000301030	NM_001256183.1	2527	atCGTATCCTgt/atgt																																																																															
SDHA	6389	MSKCC	GRCh37	5	233709	233709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	122	498	1	ENST00000264932.6:c.1013C>T	p.Ala338Val	p.A338V	ENST00000264932	NM_004168.2	338	gCg/gTg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0049751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	373	550	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7576857	7576857	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	111	604	0	ENST00000269305.4:c.989T>G	p.Leu330Arg	p.L330R	ENST00000269305	NM_001126112.2	330	cTt/cGt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602404	10602404	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1432914621		P-0049751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1267	435	891	0	ENST00000171111.5:c.1174G>A	p.Ala392Thr	p.A392T	ENST00000171111	NM_203500.1	392	Gcc/Acc																																																																															
KIT	3815	MSKCC	GRCh37	4	55589841	55589841	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	145	387	0	ENST00000288135.5:c.1327del	p.Cys443ValfsTer20	p.C443Vfs*20	ENST00000288135	NM_000222.2	441	taT/ta																																																																															
SOS1	6654	MSKCC	GRCh37	2	39239341	39239341	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	34	450	0	ENST00000402219.2:c.2316G>C	p.Glu772Asp	p.E772D	ENST00000402219	NM_005633.3	772	gaG/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0049752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	33	516	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625251	69625251	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148203315		P-0049752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	70	808	1	ENST00000334134.2:c.542G>A	p.Arg181His	p.R181H	ENST00000334134	NM_005247.2	181	cGc/cAc																																																																															
RB1	5925	MSKCC	GRCh37	13	48878132	48878132	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	17	88	0	ENST00000267163.4:c.84del	p.Pro29LeufsTer36	p.P29Lfs*36	ENST00000267163	NM_000321.2	28	ccT/cc																																																																															
MET	4233	MSKCC	GRCh37	7	116340061	116340061	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	48	275	0	ENST00000397752.3:c.923C>G	p.Ser308Cys	p.S308C	ENST00000397752	NM_000245.2	308	tCc/tGc																																																																															
MET	4233	MSKCC	GRCh37	7	116411895	116411898	+	splice_region_variant,intron_variant	Splice_Region	ONP	GTTT	GTTT	AAAA			P-0049752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	125	626	1	ENST00000397752.3:c.2888-8_2888-5delinsAAAA		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
MEN1	4221	MSKCC	GRCh37	11	64571900	64571900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	104	732	1	ENST00000337652.1:c.1754C>A	p.Thr585Lys	p.T585K	ENST00000337652	NM_130803.2	585	aCg/aAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424702	49424702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	63	584	0	ENST00000301067.7:c.13645G>A	p.Glu4549Lys	p.E4549K	ENST00000301067	NM_003482.3	4549	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0049754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	130	536	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	158	612	0	ENST00000269305.4:c.842A>T	p.Asp281Val	p.D281V	ENST00000269305	NM_001126112.2	281	gAc/gTc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932321	39932321	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	88	714	0	ENST00000378444.4:c.2278C>A	p.Leu760Ile	p.L760I	ENST00000378444	NM_001123385.1	760	Ctc/Atc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632609	3632609	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201214017		P-0049754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	69	726	0	ENST00000294008.3:c.5239G>A	p.Val1747Met	p.V1747M	ENST00000294008	NM_032444.2	1747	Gtg/Atg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50818246	50818246	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	22	214	0	ENST00000398568.2:c.1824T>A	p.Phe608Leu	p.F608L	ENST00000398568	NM_001042412.1	608	ttT/ttA																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17384802	17384802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	169	597	2	ENST00000359435.4:c.434C>T	p.Ala145Val	p.A145V	ENST00000359435	NM_001033549.1	145	gCa/gTa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224771	36224771	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	94	717	0	ENST00000222270.7:c.7157C>T	p.Ser2386Leu	p.S2386L	ENST00000222270	NM_014727.1	2386	tCa/tTa																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073616	8073617	+	frameshift_variant	Frame_Shift_Ins	INS	GG	GG	AAA			P-0049754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	54	338	2	ENST00000377482.5:c.1042_1043delinsTTT	p.Pro348PhefsTer8	p.P348Ffs*8	ENST00000377482	NM_018948.3	348	CCg/TTTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256363	16256363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	216	517	1	ENST00000375759.3:c.3628G>A	p.Glu1210Lys	p.E1210K	ENST00000375759	NM_015001.2	1210	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088659	27088659	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	219	666	2	ENST00000324856.7:c.2272delC	p.Gln758ArgfsTer75	p.Q758Rfs*75	ENST00000324856	NM_006015.4	756	aaC/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	208	633	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	143	369	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115276357	115276357	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	114	418	0	ENST00000438362.2:c.971del	p.Asn324ThrfsTer15	p.N324Tfs*15	ENST00000438362	NM_001242891.1	324	aAc/ac																																																																															
NUF2	83540	MSKCC	GRCh37	1	163313582	163313582	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	61	239	0	ENST00000271452.3:c.729A>C	p.Lys243Asn	p.K243N	ENST00000271452	NM_145697.2	243	aaA/aaC																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	102	303	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720721	89720721	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	21	155	0	ENST00000371953.3:c.875del	p.Asn292MetfsTer15	p.N292Mfs*15	ENST00000371953	NM_000314.4	291	gAa/ga																																																																															
SUFU	51684	MSKCC	GRCh37	10	104375134	104375134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	228	610	1	ENST00000369902.3:c.1132G>A	p.Gly378Arg	p.G378R	ENST00000369902	NM_016169.3	378	Gga/Aga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	342	459	7	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138851	64138851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	335	867	1	ENST00000334205.4:c.2218G>A	p.Ala740Thr	p.A740T	ENST00000334205	NM_003942.2	740	Gcc/Acc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77047227	77047227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	259	577	0	ENST00000356341.3:c.1317G>T	p.Lys439Asn	p.K439N	ENST00000356341	NM_002576.4	439	aaG/aaT																																																																															
ATM	472	MSKCC	GRCh37	11	108139307	108139307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	153	495	0	ENST00000278616.4:c.2809G>A	p.Glu937Lys	p.E937K	ENST00000278616	NM_000051.3	937	Gaa/Aaa																																																																															
ATM	472	MSKCC	GRCh37	11	108170530	108170530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	142	450	0	ENST00000278616.4:c.5095G>A	p.Ala1699Thr	p.A1699T	ENST00000278616	NM_000051.3	1699	Gcc/Acc																																																																															
SDHD	6392	MSKCC	GRCh37	11	111957651	111957651	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	229	577	0	ENST00000375549.3:c.20T>C	p.Leu7Pro	p.L7P	ENST00000375549	NM_003002.3	7	cTg/cCg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118353184	118353184	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	133	327	0	ENST00000534358.1:c.4060C>A	p.Pro1354Thr	p.P1354T	ENST00000534358	NM_005933.3	1354	Cct/Act																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	121	358	3	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	149	437	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	109	575	0	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863319	57863319	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	256	804	0	ENST00000228682.2:c.1418del	p.Gly473AlafsTer40	p.G473Afs*40	ENST00000228682	NM_005269.2	472	Ggg/gg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557771	21557771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	240	662	1	ENST00000382592.4:c.2074G>A	p.Ala692Thr	p.A692T	ENST00000382592	NM_014572.2	692	Gcc/Acc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953633	32953633	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	120	351	2	ENST00000380152.3:c.8940del	p.Glu2981LysfsTer7	p.E2981Kfs*7	ENST00000380152		2978	tcA/tc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610014	81610014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	176	445	0	ENST00000298171.2:c.1612G>A	p.Ala538Thr	p.A538T	ENST00000298171	NM_000369.2	538	Gca/Aca																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	149	379	1	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
B2M	567	MSKCC	GRCh37	15	45007834	45007834	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	176	400	0	ENST00000558401.1:c.285delA	p.Asp96MetfsTer7	p.D96Mfs*7	ENST00000558401	NM_004048.2	94	gAa/ga																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66679726	66679726	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	245	491	0	ENST00000307102.5:c.45del	p.Asp16ThrfsTer25	p.D16Tfs*25	ENST00000307102	NM_002755.3	14	gCc/gc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2111956	2111956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	245	697	0	ENST00000219476.3:c.1204G>A	p.Gly402Arg	p.G402R	ENST00000219476	NM_000548.3	402	Ggg/Agg																																																																															
CBFB	865	MSKCC	GRCh37	16	67063359	67063359	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	187	394	1	ENST00000412916.2:c.54del	p.Phe18LeufsTer4	p.F18Lfs*4	ENST00000412916		17	Ttt/tt																																																																															
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	234	511	0	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032504	12032504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	28	343	0	ENST00000353533.5:c.940T>C	p.Phe314Leu	p.F314L	ENST00000353533	NM_003010.3	314	Ttt/Ctt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	208	480	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66521914	66521914	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	51	302	0	ENST00000358598.2:c.569G>A	p.Trp190Ter	p.W190*	ENST00000358598	NM_212471.2	190	tGg/tAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	243	584	1	ENST00000245479.2:c.916delG	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10252720	10252720	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377078524		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	265	708	3	ENST00000340748.4:c.3245G>A	p.Arg1082His	p.R1082H	ENST00000340748		1082	cGc/cAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15284997	15284997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	297	889	2	ENST00000263388.2:c.4618C>T	p.Arg1540Cys	p.R1540C	ENST00000263388	NM_000435.2	1540	Cgc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302441	15302441	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	343	877	0	ENST00000263388.2:c.830A>C	p.Glu277Ala	p.E277A	ENST00000263388	NM_000435.2	277	gAg/gCg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302909	15302909	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	343	1003	0	ENST00000263388.2:c.541T>G	p.Phe181Val	p.F181V	ENST00000263388	NM_000435.2	181	Ttc/Gtc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223175	36223175	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	358	922	3	ENST00000222270.7:c.5730del	p.Arg1911AspfsTer23	p.R1911Dfs*23	ENST00000222270	NM_014727.1	1909	Ccc/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224340	36224340	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	127	778	1	ENST00000222270.7:c.6895del	p.Arg2299GlyfsTer26	p.R2299Gfs*26	ENST00000222270	NM_014727.1	2297	gCc/gc																																																																															
AXL	558	MSKCC	GRCh37	19	41765621	41765621	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	274	654	0	ENST00000301178.4:c.2501del	p.Pro834LeufsTer122	p.P834Lfs*122	ENST00000301178	NM_021913.4	833	Ccc/cc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47657020	47657020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	321	350	1	ENST00000233146.2:c.1216C>T	p.Arg406Ter	p.R406*	ENST00000233146	NM_000251.2	406	Cga/Tga																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096268	178096268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	213	533	2	ENST00000397062.3:c.1063G>A	p.Ala355Thr	p.A355T	ENST00000397062	NM_006164.4	355	Gca/Aca																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266476	198266477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	102	312	0	ENST00000335508.6:c.2359dup	p.Ile787AsnfsTer21	p.I787Nfs*21	ENST00000335508	NM_012433.2	787	att/aAtt																																																																															
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	143	392	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	276	854	1	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021182	31021182	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201899433		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	265	591	0	ENST00000375687.4:c.1181G>A	p.Arg394His	p.R394H	ENST00000375687	NM_015338.5	394	cGt/cAt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	68	363	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
TOP1	7150	MSKCC	GRCh37	20	39750720	39750720	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	20	277	1	ENST00000361337.2:c.2120A>T	p.Asp707Val	p.D707V	ENST00000361337	NM_003286.2	707	gAc/gTc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62292821	62292822	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	86	452	0	ENST00000508582.2:c.287_289dup	p.Ala96dup	p.A96dup	ENST00000508582		96	-/GCT																																																																															
EP300	2033	MSKCC	GRCh37	22	41574522	41574522	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	253	695	0	ENST00000263253.7:c.6810del	p.Ser2271ProfsTer8	p.S2271Pfs*8	ENST00000263253	NM_001429.3	2269	atG/at																																																																															
MITF	4286	MSKCC	GRCh37	3	69928347	69928347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	186	504	2	ENST00000352241.4:c.167G>A	p.Arg56His	p.R56H	ENST00000352241	NM_198159.2	56	cGc/cAc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430202	181430202	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	142	416	0	ENST00000325404.1:c.59del	p.Gly20AlafsTer26	p.G20Afs*26	ENST00000325404	NM_003106.3	18	tcG/tc																																																																															
TP63	8626	MSKCC	GRCh37	3	189526227	189526227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	269	731	0	ENST00000264731.3:c.491C>A	p.Ala164Asp	p.A164D	ENST00000264731	NM_003722.4	164	gCc/gAc																																																																															
TET2	54790	MSKCC	GRCh37	4	106156139	106156139	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755979073		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	124	393	0	ENST00000380013.4:c.1040C>T	p.Ala347Val	p.A347V	ENST00000380013	NM_001127208.2	347	gCg/gTg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867540	35867541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1250237683		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	93	304	2	ENST00000303115.3:c.361dup	p.Ile121AsnfsTer8	p.I121Nfs*8	ENST00000303115	NM_002185.3	118	-/A																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	367	516	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	120	368	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175166	112175166	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371113837		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	77	236	0	ENST00000257430.4:c.3875C>T	p.Thr1292Met	p.T1292M	ENST00000257430	NM_000038.5	1292	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175621	112175622	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	111	331	0	ENST00000257430.4:c.4333dup	p.Thr1445AsnfsTer10	p.T1445Nfs*10	ENST00000257430	NM_000038.5	1444	caa/cAaa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056237	26056245	+	inframe_deletion	In_Frame_Del	DEL	CTTCTTGGG	CTTCTTGGG	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	147	523	0	ENST00000343677.2:c.412_420delCCCAAGAAG	p.Pro138_Lys140del	p.P138_K140del	ENST00000343677	NM_005319.3	138	CCCAAGAAG/-																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32183057	32183057	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	288	753	0	ENST00000375023.3:c.1967del	p.Pro656LeufsTer37	p.P656Lfs*37	ENST00000375023	NM_004557.3	656	cCt/ct																																																																															
FYN	2534	MSKCC	GRCh37	6	112015704	112015704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	240	547	1	ENST00000368678.4:c.1138C>T	p.Arg380Cys	p.R380C	ENST00000368678		380	Cgc/Tgc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099333	157099356	+	inframe_deletion	In_Frame_Del	DEL	CCACCACCACCACCACCATGCCCA	CCACCACCACCACCACCATGCCCA	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	74	453	0	ENST00000346085.5:c.275_298del	p.His92_His99del	p.H92_H99del	ENST00000346085	NM_020732.3	90	gcCCACCACCACCACCACCATGCCCAc/gcc																																																																															
PARK2	5071	MSKCC	GRCh37	6	161781225	161781225	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1801334		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	171	579	0	ENST00000366898.1:c.1180G>A	p.Asp394Asn	p.D394N	ENST00000366898	NM_004562.2	394	Gat/Aat																																																																															
ABL1	25	MSKCC	GRCh37	9	133760307	133760307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	210	703	0	ENST00000318560.5:c.2630G>T	p.Arg877Met	p.R877M	ENST00000318560	NM_005157.4	877	aGg/aTg																																																																															
ARAF	369	MSKCC	GRCh37	X	47430386	47430386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	303	426	0	ENST00000377045.4:c.1661G>A	p.Arg554Gln	p.R554Q	ENST00000377045	NM_001654.4	554	cGg/cAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	199	355	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982123	93982123	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	27	432	1	ENST00000369303.4:c.1342G>T	p.Gly448Ter	p.G448*	ENST00000369303	NM_004440.3	448	Gga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	110	400	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911311	29911311	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	98	441	1	ENST00000376809.5:c.610C>T	p.Gln204Ter	p.Q204*	ENST00000376809	NM_002116.7	204	Cag/Tag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438169	56438169	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	303	727	0	ENST00000407977.2:c.824G>T	p.Cys275Phe	p.C275F	ENST00000407977		275	tGt/tTt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911752	32911752	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	117	468	0	ENST00000380152.3:c.3263del	p.Pro1088LeufsTer16	p.P1088Lfs*16	ENST00000380152		1087	aCc/ac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575103	48575103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	108	327	0	ENST00000342988.3:c.297G>C	p.Trp99Cys	p.W99C	ENST00000342988	NM_005359.5	99	tgG/tgC																																																																															
APC	324	MSKCC	GRCh37	5	112178625	112178646	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAAGCTCCAAGCCCAACCTT	AAGAAGCTCCAAGCCCAACCTT	-			P-0049763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	104	335	0	ENST00000257430.4:c.7340_7361del	p.Ala2447GlufsTer31	p.A2447Efs*31	ENST00000257430	NM_000038.5	2445	aAAGAAGCTCCAAGCCCAACCTTa/aa																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519231	137519231	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	23	441	0	ENST00000367739.4:c.1407T>A	p.Asp469Glu	p.D469E	ENST00000367739	NM_000416.2	469	gaT/gaA																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879885	37879885	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	48	1082	0	ENST00000269571.5:c.2180G>C	p.Gly727Ala	p.G727A	ENST00000269571		727	gGa/gCa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0049778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	72	816	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0049778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	64	868	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
CDH1	999	MSKCC	GRCh37	16	68842594	68842594	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0049778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	69	582	0	ENST00000261769.5:c.532-2A>G		p.X178_splice	ENST00000261769	NM_004360.3	178																																																																																
TSC2	7249	MSKCC	GRCh37	16	2112496	2112496	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0049778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	47	873	0	ENST00000219476.3:c.1258-2A>G		p.X420_splice	ENST00000219476	NM_000548.3	420																																																																																
RUNX1	861	MSKCC	GRCh37	21	36171643	36171644	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	81	521	0	ENST00000300305.3:c.921dup	p.Ser308GlnfsTer292	p.S308Qfs*292	ENST00000300305		307	-/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0049780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	71	396	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057520005		P-0049780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	98	706	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21628737	21628737	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	59	342	0	ENST00000421138.2:c.971A>G	p.Gln324Arg	p.Q324R	ENST00000421138		324	cAg/cGg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900290	101900290	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	55	402	0	ENST00000374994.4:c.724T>C	p.Trp242Arg	p.W242R	ENST00000374994	NM_004612.2	242	Tgg/Cgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	36	411	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149495360	149495360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs114435947		P-0049781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	77	818	2	ENST00000261799.4:c.3287C>T	p.Ala1096Val	p.A1096V	ENST00000261799	NM_002609.3	1096	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579433	7579433	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1064793279		P-0049781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	77	836	0	ENST00000269305.4:c.254del	p.Pro85LeufsTer38	p.P85Lfs*38	ENST00000269305	NM_001126112.2	85	cCt/ct																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981170	201981171	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	88	842	0	ENST00000359651.3:c.249_250insG	p.Lys84GlufsTer8	p.K84Efs*8	ENST00000359651		83	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	352	707	3	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																																																															
APC	324	MSKCC	GRCh37	5	112155042	112155042	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	160	490	2	ENST00000257430.4:c.1312+1G>A		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
HNF1A	6927	MSKCC	GRCh37	12	121432040	121432040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1301	166	872	0	ENST00000257555.6:c.787C>T	p.Arg263Cys	p.R263C	ENST00000257555		263	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916860	178916862	+	missense_variant	Missense_Mutation	ONP	TTT	TTT	AAG			P-0049803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	64	701	1	ENST00000263967.3:c.247_249delinsAAG	p.Phe83Lys	p.F83K	ENST00000263967	NM_006218.2	83	TTT/AAG																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735548	40735548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	464	676	3	ENST00000373198.4:c.3325C>T	p.Arg1109Trp	p.R1109W	ENST00000373198	NM_133170.3	1109	Cgg/Tgg																																																																															
TET2	54790	MSKCC	GRCh37	4	106197599	106197599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	198	516	1	ENST00000380013.4:c.5932G>A	p.Val1978Met	p.V1978M	ENST00000380013	NM_001127208.2	1978	Gtg/Atg																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2491276	2491276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	358	818	3	ENST00000355716.4:c.319G>A	p.Ala107Thr	p.A107T	ENST00000355716	NM_003820.2	107	Gcg/Acg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660154	227660154	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	73	913	1	ENST00000305123.5:c.3301T>A	p.Ser1101Thr	p.S1101T	ENST00000305123	NM_005544.2	1101	Tcc/Acc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061218	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCCGTTCTCGAACATGTT	GCCGTTCTCGAACATGTT	-			P-0049806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	117	618	0	ENST00000250448.2:c.754_771del	p.Asn252_Gly257del	p.N252_G257del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGC/-																																																																															
APC	324	MSKCC	GRCh37	5	112175696	112175696	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	115	405	0	ENST00000257430.4:c.4405C>T	p.Gln1469Ter	p.Q1469*	ENST00000257430	NM_000038.5	1469	Caa/Taa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061220	38061243	+	inframe_deletion	In_Frame_Del	DEL	CGTTCTCGAACATGTTGCCGGAGT	CGTTCTCGAACATGTTGCCGGAGT	-			P-0049807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	103	508	0	ENST00000250448.2:c.746_769delACTCCGGCAACATGTTCGAGAACG	p.Asp249_Asn256del	p.D249_N256del	ENST00000250448	NM_004496.3	249	gACTCCGGCAACATGTTCGAGAACGgc/ggc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3656483	3656483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201117707		P-0049807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	159	787	1	ENST00000294008.3:c.752C>T	p.Ala251Val	p.A251V	ENST00000294008	NM_032444.2	251	gCg/gTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89882331	89882331	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	106	655	0	ENST00000389301.3:c.143T>A	p.Val48Glu	p.V48E	ENST00000389301	NM_000135.2	48	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0049811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	235	377	1	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579448	7579448	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	1236	818	4	ENST00000269305.4:c.239del	p.Pro80LeufsTer43	p.P80Lfs*43	ENST00000269305	NM_001126112.2	80	cCt/ct																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075280	16075280	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1277	180	588	0	ENST00000268712.3:c.272C>G	p.Pro91Arg	p.P91R	ENST00000268712	NM_006311.3	91	cCg/cGg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053005	180053005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1244	232	808	0	ENST00000261937.6:c.1285G>T	p.Ala429Ser	p.A429S	ENST00000261937	NM_182925.4	429	Gcc/Tcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005071-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			273	131	425	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005071-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	103	268	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856529	111856529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005071-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			395	57	502	1	ENST00000341259.2:c.580G>A	p.Glu194Lys	p.E194K	ENST00000341259	NM_005475.2	194	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221846	55221846	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0005071-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			715	86	684	1	ENST00000275493.2:c.889+1G>A		p.X297_splice	ENST00000275493	NM_005228.3	297																																																																																
NF1	4763	MSKCC	GRCh37	17	29679377	29679377	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005071-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	41	278	1	ENST00000358273.4:c.7560A>T	p.Lys2520Asn	p.K2520N	ENST00000358273	NM_001042492.2	2520	aaA/aaT																																																																															
MTOR	2475	MSKCC	GRCh37	1	11177107	11177107	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	183	401	0	ENST00000361445.4:c.6970T>G	p.Leu2324Val	p.L2324V	ENST00000361445	NM_004958.3	2324	Tta/Gta																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946944	71946944	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	274	738	1	ENST00000298229.2:c.2793A>T	p.Leu931Phe	p.L931F	ENST00000298229	NM_001567.3	931	ttA/ttT																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061383	38061442	+	inframe_deletion	In_Frame_Del	DEL	GTCCATGATCCACTGGTAGATCTCGCTCAGCGTGAGCATCTTGCTGGGCGCCTGCTGGAT	GTCCATGATCCACTGGTAGATCTCGCTCAGCGTGAGCATCTTGCTGGGCGCCTGCTGGAT	-			P-0049523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	211	505	1	ENST00000250448.2:c.547_606del	p.Ile183_Asp202del	p.I183_D202del	ENST00000250448	NM_004496.3	183	ATCCAGCAGGCGCCCAGCAAGATGCTCACGCTGAGCGAGATCTACCAGTGGATCATGGAC/-																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212576874	212576874	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	170	370	0	ENST00000342788.4:c.1025T>C	p.Leu342Ser	p.L342S	ENST00000342788	NM_005235.2	342	tTg/tCg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0049524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	117	502	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
ATRX	546	MSKCC	GRCh37	X	76952169	76952172	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0049524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	125	237	0	ENST00000373344.5:c.263_266del	p.Lys88MetfsTer2	p.K88Mfs*2	ENST00000373344	NM_000489.3	88	aAGTAt/at																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061178	38061195	+	inframe_deletion	In_Frame_Del	DEL	GCTTCTCGCACTTGAAGC	GCTTCTCGCACTTGAAGC	-			P-0049525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	95	368	0	ENST00000250448.2:c.794_811delGCTTCAAGTGCGAGAAGC	p.Arg265_Lys270del	p.R265_K270del	ENST00000250448	NM_004496.3	265	cGCTTCAAGTGCGAGAAGCag/cag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828497	72828504	+	frameshift_variant	Frame_Shift_Del	DEL	CGAGCTCG	CGAGCTCG	-			P-0049525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	45	715	0	ENST00000268489.5:c.8077_8084del	p.Arg2693GlyfsTer32	p.R2693Gfs*32	ENST00000268489	NM_006885.3	2693	CGAGCTCGg/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587780070		P-0049527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	76	653	1	ENST00000269305.4:c.535C>A	p.His179Asn	p.H179N	ENST00000269305	NM_001126112.2	179	Cat/Aat																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78432581	78432581	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	39	465	0	ENST00000370768.2:c.402A>G	p.Ile134Met	p.I134M	ENST00000370768	NM_003902.3	134	atA/atG																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683223	88683223	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	38	341	0	ENST00000372037.3:c.1433G>C	p.Arg478Pro	p.R478P	ENST00000372037	NM_004329.2	478	cGt/cCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0049528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	118	661	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	100	441	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	105	380	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
APC	324	MSKCC	GRCh37	5	112175706	112175706	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	66	375	0	ENST00000257430.4:c.4415del	p.Val1472GlufsTer35	p.V1472Efs*35	ENST00000257430	NM_000038.5	1472	gTa/ga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153252021	153252021	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0049528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	35	396	0	ENST00000281708.4:c.986-1G>A		p.X329_splice	ENST00000281708	NM_033632.3	329																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153249457	153249457	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	79	506	0	ENST00000281708.4:c.1321C>G	p.Arg441Gly	p.R441G	ENST00000281708	NM_033632.3	441	Cgg/Ggg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777056	9777056	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	123	706	0	ENST00000377346.4:c.820C>A	p.Leu274Met	p.L274M	ENST00000377346	NM_005026.3	274	Ctg/Atg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15300123	15300123	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	158	753	0	ENST00000263388.2:c.1153G>C	p.Gly385Arg	p.G385R	ENST00000263388	NM_000435.2	385	Ggt/Cgt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56390435	56390435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	21	289	0	ENST00000348428.3:c.1174C>T	p.Arg392Cys	p.R392C	ENST00000348428	NM_006785.3	392	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0049533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	33	367	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177011	56177014	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0049533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	29	358	0	ENST00000399503.3:c.2286_2289delTAGA	p.Arg763CysfsTer35	p.R763Cfs*35	ENST00000399503	NM_005921.1	761	ATAGat/at																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	33	424	0	ENST00000250448.2:c.798C>G	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttG																																																																															
ATM	472	MSKCC	GRCh37	11	108206578	108206578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	31	317	0	ENST00000278616.4:c.8158G>A	p.Asp2720Asn	p.D2720N	ENST00000278616	NM_000051.3	2720	Gat/Aat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023895	27023895	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	14	169	0	ENST00000324856.7:c.1001C>A	p.Ser334Ter	p.S334*	ENST00000324856	NM_006015.4	334	tCg/tAg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188980	32188980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	89	742	0	ENST00000375023.3:c.574G>A	p.Glu192Lys	p.E192K	ENST00000375023	NM_004557.3	192	Gaa/Aaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160564	56160564	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	27	212	1	ENST00000399503.3:c.838C>T	p.Gln280Ter	p.Q280*	ENST00000399503	NM_005921.1	280	Cag/Tag																																																																															
SUFU	51684	MSKCC	GRCh37	10	104269035	104269035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	56	538	0	ENST00000369902.3:c.292C>T	p.Leu98Phe	p.L98F	ENST00000369902	NM_016169.3	98	Ctc/Ttc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831312	72831312	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	41	391	0	ENST00000268489.5:c.5269C>T	p.Gln1757Ter	p.Q1757*	ENST00000268489	NM_006885.3	1757	Cag/Tag																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953288	17953288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	75	785	0	ENST00000458235.1:c.698C>T	p.Ser233Leu	p.S233L	ENST00000458235	NM_000215.3	233	tCg/tTg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6045556	6045556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	24	221	0	ENST00000265849.7:c.130G>C	p.Glu44Gln	p.E44Q	ENST00000265849	NM_000535.5	44	Gaa/Caa																																																																															
BTK	695	MSKCC	GRCh37	X	100613387	100613387	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	56	524	0	ENST00000308731.7:c.1013C>G	p.Ser338Cys	p.S338C	ENST00000308731	NM_000061.2	338	tCc/tGc																																																																															
BRAF	673	MSKCC	GRCh37	7	140487360	140487360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507472		P-0049590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	214	561	0	ENST00000288602.6:c.1165C>T	p.Arg389Cys	p.R389C	ENST00000288602	NM_004333.4	389	Cgt/Tgt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37671997	37671997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	184	525	0	ENST00000447079.4:c.2782G>A	p.Glu928Lys	p.E928K	ENST00000447079	NM_015083.1	928	Gaa/Aaa																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119720928	119720928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	203	512	1	ENST00000316626.5:c.247G>A	p.Ala83Thr	p.A83T	ENST00000316626		83	Gcc/Acc																																																																															
REL	5966	MSKCC	GRCh37	2	61144108	61144108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	127	518	2	ENST00000295025.8:c.491C>T	p.Thr164Met	p.T164M	ENST00000295025	NM_002908.2	164	aCg/aTg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42839678	42839678	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1268	307	791	0	ENST00000398585.3:c.1561A>T	p.Ile521Phe	p.I521F	ENST00000398585	NM_001135099.1	521	Att/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0049620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	436	739	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0049620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	137	358	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182252	38182252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	97	526	1	ENST00000396334.3:c.688C>T	p.Arg230Cys	p.R230C	ENST00000396334	NM_002468.4	230	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0049620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	197	406	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3860770	3860770	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	135	373	0	ENST00000262367.5:c.809C>A	p.Thr270Asn	p.T270N	ENST00000262367	NM_004380.2	270	aCt/aAt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	218	587	0	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																																																															
ERF	2077	MSKCC	GRCh37	19	42754493	42754493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	338	739	0	ENST00000222329.4:c.247C>T	p.Arg83Trp	p.R83W	ENST00000222329	NM_006494.2	83	Cgg/Tgg																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66519954	66519954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	29	323	0	ENST00000358598.2:c.437G>A	p.Arg146Lys	p.R146K	ENST00000358598	NM_212471.2	146	aGa/aAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434154	49434155	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0049624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	218	845	1	ENST00000301067.7:c.7398_7399delinsTT	p.Leu2466_His2467delinsPheTyr	p.L2466_H2467delinsFY	ENST00000301067	NM_003482.3	2466	ttGCat/ttTTat																																																																															
ALK	238	MSKCC	GRCh37	2	29917806	29917806	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	309	807	0	ENST00000389048.3:c.862T>A	p.Trp288Arg	p.W288R	ENST00000389048	NM_004304.4	288	Tgg/Agg																																																																															
MSH3	4437	MSKCC	GRCh37	5	80063873	80063873	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	41	389	0	ENST00000265081.6:c.2018T>C	p.Leu673Ser	p.L673S	ENST00000265081	NM_002439.4	673	tTa/tCa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64135721	64135721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	28	711	0	ENST00000334205.4:c.1189G>T	p.Ala397Ser	p.A397S	ENST00000334205	NM_003942.2	397	Gct/Tct																																																																															
TET2	54790	MSKCC	GRCh37	4	106156273	106156273	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	43	265	0	ENST00000380013.4:c.1174T>G	p.Phe392Val	p.F392V	ENST00000380013	NM_001127208.2	392	Ttt/Gtt																																																																															
MET	4233	MSKCC	GRCh37	7	116411883	116411907	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCTTTCTCTCTGTTTTAAGATCTG	TTCTTTCTCTCTGTTTTAAGATCTG	-			P-0049630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	234	729	0	ENST00000397752.3:c.2888-20_2892del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
XRCC2	7516	MSKCC	GRCh37	7	152346062	152346062	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	98	508	0	ENST00000359321.1:c.508G>T	p.Glu170Ter	p.E170*	ENST00000359321	NM_005431.1	170	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0049632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	204	432	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0049632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	92	359	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144498	11144498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	122	662	0	ENST00000344626.4:c.3830C>T	p.Pro1277Leu	p.P1277L	ENST00000344626	NM_003072.3	1277	cCg/cTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0049632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	70	346	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
CBFB	865	MSKCC	GRCh37	16	67070641	67070642	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	22	146	0	ENST00000412916.2:c.268dup	p.Arg90LysfsTer26	p.R90Kfs*26	ENST00000412916		89	gaa/gAaa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991899	72991899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	101	611	0	ENST00000268489.5:c.2146G>A	p.Gly716Ser	p.G716S	ENST00000268489	NM_006885.3	716	Ggc/Agc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2214507	2214507	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	129	698	0	ENST00000398665.3:c.1835C>G	p.Ala612Gly	p.A612G	ENST00000398665	NM_032482.2	612	gCc/gGc																																																																															
CALR	811	MSKCC	GRCh37	19	13051162	13051162	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	81	502	0	ENST00000316448.5:c.598T>C	p.Trp200Arg	p.W200R	ENST00000316448	NM_004343.3	200	Tgg/Cgg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177665	56177665	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	56	347	0	ENST00000399503.3:c.2638C>T	p.Gln880Ter	p.Q880*	ENST00000399503	NM_005921.1	880	Caa/Taa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181815	56181831	+	frameshift_variant	Frame_Shift_Del	DEL	ATTAACTACACTGAACA	ATTAACTACACTGAACA	-			P-0049632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	33	275	0	ENST00000399503.3:c.4039_4055del	p.Ile1347ValfsTer10	p.I1347Vfs*10	ENST00000399503	NM_005921.1	1347	ATTAACTACACTGAACAg/g																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874449	151874449	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0049632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	53	311	0	ENST00000262189.6:c.8089A>T	p.Lys2697Ter	p.K2697*	ENST00000262189	NM_170606.2	2697	Aag/Tag																																																																															
MED12	9968	MSKCC	GRCh37	X	70349240	70349241	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0049632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	84	575	1	ENST00000374080.3:c.3652_3653delinsTT	p.Gly1218Leu	p.G1218L	ENST00000374080		1218	GGa/TTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0049634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	29	628	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0049634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	30	395	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27093058	27093058	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0049637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	48	267	0	ENST00000324856.7:c.2988+1G>T		p.X996_splice	ENST00000324856	NM_006015.4	996																																																																																
NTRK1	4914	MSKCC	GRCh37	1	156849872	156849872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	99	631	1	ENST00000524377.1:c.2128G>A	p.Val710Met	p.V710M	ENST00000524377	NM_002529.3	710	Gtg/Atg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604776	48604776	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	28	312	0	ENST00000342988.3:c.1598T>G	p.Leu533Arg	p.L533R	ENST00000342988	NM_005359.5	533	cTc/cGc																																																																															
EP300	2033	MSKCC	GRCh37	22	41569680	41569680	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	37	181	0	ENST00000263253.7:c.4671C>A	p.Ser1557Arg	p.S1557R	ENST00000263253	NM_001429.3	1557	agC/agA																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713544	30713544	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	93	480	0	ENST00000359013.4:c.944A>G	p.Glu315Gly	p.E315G	ENST00000359013	NM_001024847.2	315	gAg/gGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0049638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	225	573	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0049638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	54	386	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37053589	37053589	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0049638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	45	332	0	ENST00000231790.2:c.676C>T	p.Arg226Ter	p.R226*	ENST00000231790	NM_000249.3	226	Cga/Tga																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277225	41277225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	44	223	0	ENST00000349496.5:c.1694G>A	p.Arg565His	p.R565H	ENST00000349496	NM_001904.3	565	cGc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	41991316	41991316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	100	397	1	ENST00000219905.7:c.2147C>T	p.Thr716Ile	p.T716I	ENST00000219905	NM_001164273.1	716	aCt/aTt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210824	2210824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	96	514	3	ENST00000398665.3:c.1321G>A	p.Val441Met	p.V441M	ENST00000398665	NM_032482.2	441	Gtg/Atg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662029	227662029	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	98	649	0	ENST00000305123.5:c.1426C>G	p.Leu476Val	p.L476V	ENST00000305123	NM_005544.2	476	Ctg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	37	341	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	71	498	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894904	101894904	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56014374		P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	40	332	0	ENST00000374994.4:c.457G>A	p.Val153Ile	p.V153I	ENST00000374994	NM_004612.2	153	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112175970	112175970	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	21	213	0	ENST00000257430.4:c.4682delA	p.Lys1561ArgfsTer4	p.K1561Rfs*4	ENST00000257430	NM_000038.5	1560	gAa/ga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	42	296	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	97	574	0	ENST00000269305.4:c.800G>A	p.Arg267Gln	p.R267Q	ENST00000269305	NM_001126112.2	267	cGg/cAg																																																																															
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	51	480	2	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	100	824	5	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465606	99465606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	65	503	0	ENST00000268035.6:c.2431G>A	p.Glu811Lys	p.E811K	ENST00000268035	NM_000875.3	811	Gag/Aag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	80	795	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	63	430	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721049	176721049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	69	491	0	ENST00000439151.2:c.6680C>T	p.Pro2227Leu	p.P2227L	ENST00000439151	NM_022455.4	2227	cCg/cTg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937914	36937914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	104	1035	0	ENST00000361632.4:c.922C>T	p.Arg308Cys	p.R308C	ENST00000361632		308	Cgc/Tgc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807363	3807364	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	38	337	0	ENST00000262367.5:c.3623dupC	p.Gln1209ThrfsTer25	p.Q1209Tfs*25	ENST00000262367	NM_004380.2	1208	cca/ccCa																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278073	18278073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	108	805	0	ENST00000222254.8:c.1693C>T	p.Pro565Ser	p.P565S	ENST00000222254	NM_005027.3	565	Ccg/Tcg																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	53	376	1	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216725	2216725	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200144638		P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	132	953	5	ENST00000398665.3:c.2369C>T	p.Thr790Met	p.T790M	ENST00000398665	NM_032482.2	790	aCg/aTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	10	132	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185165720	185165720	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	64	327	0	ENST00000265026.3:c.999delA	p.Val334LeufsTer14	p.V334Lfs*14	ENST00000265026	NM_004721.4	332	gAa/ga																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42839785	42839785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	56	478	0	ENST00000398585.3:c.1454C>T	p.Ser485Leu	p.S485L	ENST00000398585	NM_001135099.1	485	tCg/tTg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39617680	39617680	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	37	280	0	ENST00000262039.4:c.1869del	p.Phe623LeufsTer43	p.F623Lfs*43	ENST00000262039	NM_002647.2	622	Ttt/tt																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082313	16082314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	109	923	3	ENST00000281043.3:c.134dupC	p.Glu47GlyfsTer8	p.E47Gfs*8	ENST00000281043	NM_005378.4	43	acc/aCcc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137271	64137271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	105	852	0	ENST00000334205.4:c.1703C>T	p.Thr568Met	p.T568M	ENST00000334205	NM_003942.2	568	aCg/aTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119780	70119781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	72	561	0	ENST00000245479.2:c.788dupG	p.Arg264GlnfsTer32	p.R264Qfs*32	ENST00000245479	NM_000346.3	261	gag/gaGg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324892	31324892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs765875917		P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	22	139	0	ENST00000412585.2:c.44del	p.Ala15GlyfsTer5	p.A15Gfs*5	ENST00000412585	NM_005514.6	15	gCg/gg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	121	994	2	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	113	842	2	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041262	29041262	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	42	390	0	ENST00000282397.4:c.166delG	p.Glu56LysfsTer12	p.E56Kfs*12	ENST00000282397	NM_002019.4	56	Gaa/aa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945757	38945757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	16	230	0	ENST00000357387.3:c.4469C>T	p.Thr1490Met	p.T1490M	ENST00000357387	NM_152756.3	1490	aCg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435967	49435967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	121	715	1	ENST00000301067.7:c.6014G>A	p.Arg2005His	p.R2005H	ENST00000301067	NM_003482.3	2005	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	120	813	1	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																															
GATA1	2623	MSKCC	GRCh37	X	48651591	48651591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	78	296	0	ENST00000376670.3:c.757C>T	p.Arg253Trp	p.R253W	ENST00000376670	NM_002049.3	253	Cgg/Tgg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864218	57864218	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	83	661	4	ENST00000228682.2:c.1700del	p.Pro567LeufsTer46	p.P567Lfs*46	ENST00000228682	NM_005269.2	565	ttC/tt																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50484058	50484058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	90	559	1	ENST00000394963.4:c.908G>A	p.Arg303Gln	p.R303Q	ENST00000394963	NM_003076.4	303	cGa/cAa																																																																															
ALK	238	MSKCC	GRCh37	2	29416692	29416692	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	53	434	0	ENST00000389048.3:c.4261del	p.Val1421PhefsTer56	p.V1421Ffs*56	ENST00000389048	NM_004304.4	1421	Gtt/tt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288870	15288870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	53	358	0	ENST00000263388.2:c.3869C>T	p.Ala1290Val	p.A1290V	ENST00000263388	NM_000435.2	1290	gCg/gTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412248	63412248	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	91	439	0	ENST00000330258.3:c.919del	p.Asp307ThrfsTer3	p.D307Tfs*3	ENST00000330258	NM_152424.3	307	Gac/ac																																																																															
MSI2	124540	MSKCC	GRCh37	17	55752347	55752347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	145	911	0	ENST00000284073.2:c.805C>T	p.Arg269Trp	p.R269W	ENST00000284073	NM_138962.2	269	Cgg/Tgg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609768	117609768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	54	456	0	ENST00000368508.3:c.6931G>A	p.Ala2311Thr	p.A2311T	ENST00000368508	NM_002944.2	2311	Gca/Aca																																																																															
CBL	867	MSKCC	GRCh37	11	119155691	119155691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	66	440	1	ENST00000264033.4:c.1444C>T	p.Pro482Ser	p.P482S	ENST00000264033	NM_005188.3	482	Cct/Tct																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233274	46233274	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	46	243	0	ENST00000334344.6:c.1496del	p.Pro499GlnfsTer7	p.P499Qfs*7	ENST00000334344	NM_152641.2	498	gCc/gc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32890601	32890601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	39	280	0	ENST00000380152.3:c.4C>T	p.Pro2Ser	p.P2S	ENST00000380152		2	Cct/Tct																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437838	110437838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	81	438	1	ENST00000375856.3:c.563C>T	p.Ala188Val	p.A188V	ENST00000375856	NM_003749.2	188	gCt/gTt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225347	2225347	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201904294		P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	102	817	0	ENST00000326181.6:c.1432C>T	p.His478Tyr	p.H478Y	ENST00000326181	NM_032271.2	478	Cat/Tat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991448	72991448	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	122	769	0	ENST00000268489.5:c.2597T>C	p.Leu866Pro	p.L866P	ENST00000268489	NM_006885.3	866	cTg/cCg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108208	8108208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	93	663	0	ENST00000585124.1:c.1016C>T	p.Ala339Val	p.A339V	ENST00000585124	NM_004217.3	339	gCc/gTc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12044509	12044509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	41	353	0	ENST00000353533.5:c.1132G>A	p.Ala378Thr	p.A378T	ENST00000353533	NM_003010.3	378	Gca/Aca																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18274112	18274112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	81	642	0	ENST00000222254.8:c.1330G>A	p.Ala444Thr	p.A444T	ENST00000222254	NM_005027.3	444	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222923	36222923	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	130	936	1	ENST00000222270.7:c.5552G>T	p.Ser1851Ile	p.S1851I	ENST00000222270	NM_014727.1	1851	aGc/aTc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753281	42753281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	101	945	0	ENST00000222329.4:c.983C>A	p.Pro328His	p.P328H	ENST00000222329	NM_006494.2	328	cCc/cAc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47643489	47643489	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	78	490	0	ENST00000233146.2:c.997T>C	p.Cys333Arg	p.C333R	ENST00000233146	NM_000251.2	333	Tgt/Cgt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49939965	49939965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	135	823	1	ENST00000296474.3:c.1078G>A	p.Val360Met	p.V360M	ENST00000296474	NM_002447.2	360	Gtg/Atg																																																																															
KIT	3815	MSKCC	GRCh37	4	55594251	55594251	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	40	347	0	ENST00000288135.5:c.1954A>G	p.Asn652Asp	p.N652D	ENST00000288135	NM_000222.2	652	Aat/Gat																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38971980	38971980	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	27	259	0	ENST00000357387.3:c.971G>A	p.Arg324Lys	p.R324K	ENST00000357387	NM_152756.3	324	aGg/aAg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738290	145738290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	121	995	1	ENST00000428558.2:c.2695G>T	p.Gly899Cys	p.G899C	ENST00000428558	NM_004260.3	899	Ggc/Tgc																																																																															
ABL1	25	MSKCC	GRCh37	9	133760132	133760132	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373527910		P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	69	703	0	ENST00000318560.5:c.2455C>T	p.Arg819Trp	p.R819W	ENST00000318560	NM_005157.4	819	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0049662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	281	704	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	159	596	0	ENST00000324856.7:c.3977dupC	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851286	156851286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	140	812	0	ENST00000524377.1:c.2243G>A	p.Arg748Gln	p.R748Q	ENST00000524377	NM_002529.3	748	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710517	114710517	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0049662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	70	356	0	ENST00000543371.1:c.2T>A	p.Met1?	p.M1?	ENST00000543371	NM_001198531.1	1	aTg/aAg																																																																															
APC	324	MSKCC	GRCh37	5	112174745	112174745	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	13	197	0	ENST00000257430.4:c.3454C>T	p.Gln1152Ter	p.Q1152*	ENST00000257430	NM_000038.5	1152	Cag/Tag																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748093	72748093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	83	545	0	ENST00000357731.5:c.85C>T	p.Pro29Ser	p.P29S	ENST00000357731	NM_173808.2	29	Ccc/Tcc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752411	57752412	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0049668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	60	192	0	ENST00000274289.3:c.1161_1162delAG	p.Arg387SerfsTer3	p.R387Sfs*3	ENST00000274289	NM_006622.3	387	agAGtg/agtg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117335	115117335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	83	292	0	ENST00000257566.3:c.839C>T	p.Ala280Val	p.A280V	ENST00000257566	NM_016569.3	280	gCt/gTt																																																																															
CDH1	999	MSKCC	GRCh37	16	68844109	68844110	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACGCTGTG			P-0049668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	130	466	0	ENST00000261769.5:c.698_705dup	p.Ser236ThrfsTer17	p.S236Tfs*17	ENST00000261769	NM_004360.3	233	cac/cACGCTGTGac																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444345	50444345	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	94	363	0	ENST00000331340.3:c.275T>C	p.Met92Thr	p.M92T	ENST00000331340	NM_006060.4	92	aTg/aCg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0049681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	110	392	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250826	26250826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	19	245	1	ENST00000446824.2:c.8G>A	p.Arg3His	p.R3H	ENST00000446824	NM_021018.2	3	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0049130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	174	360	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220640	1220640	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			546	317	798	0	ENST00000326873.7:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000326873	NM_000455.4	220	Cag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108200976	108200976	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			246	206	352	0	ENST00000278616.4:c.7343A>T	p.Asp2448Val	p.D2448V	ENST00000278616	NM_000051.3	2448	gAt/gTt																																																																															
CCNE1	898	MSKCC	GRCh37	19	30314622	30314622	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			521	282	544	0	ENST00000262643.3:c.1171A>T	p.Ser391Cys	p.S391C	ENST00000262643	NM_001238.2	391	Agt/Tgt																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793446	242793446	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			507	182	488	0	ENST00000334409.5:c.631G>T	p.Glu211Ter	p.E211*	ENST00000334409	NM_005018.2	211	Gag/Tag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141111	55141111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			350	163	401	0	ENST00000257290.5:c.1757G>C	p.Trp586Ser	p.W586S	ENST00000257290	NM_006206.4	586	tGg/tCg																																																																															
HGF	3082	MSKCC	GRCh37	7	81392026	81392026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			300	44	260	0	ENST00000222390.5:c.251G>T	p.Cys84Phe	p.C84F	ENST00000222390	NM_000601.4	84	tGc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0049140-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			509	460	524	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
SMYD3	64754	MSKCC	GRCh37	1	246490592	246490592	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049140-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			357	125	408	0	ENST00000388985.4:c.442G>C	p.Val148Leu	p.V148L	ENST00000388985		148	Gta/Cta																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31466312	31466312	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0049140-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	463	479	0	ENST00000344624.3:c.2443A>T	p.Lys815Ter	p.K815*	ENST00000344624		815	Aaa/Taa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545641	106545641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049140-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	121	391	0	ENST00000359195.3:c.3118C>T	p.Pro1040Ser	p.P1040S	ENST00000359195	NM_002649.2	1040	Ccc/Tcc																																																																															
MET	4233	MSKCC	GRCh37	7	116423398	116423398	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049140-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			355	23	254	0	ENST00000397752.3:c.3673C>G	p.Leu1225Val	p.L1225V	ENST00000397752	NM_000245.2	1225	Ctt/Gtt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			170	453	434	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs764146326		P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			261	266	644	2	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120527	70120527	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			221	591	660	0	ENST00000245479.2:c.1529G>C	p.Ter510SerextTer49	p.*510Sext*49	ENST00000245479	NM_000346.3	510	tGa/tCa																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926885	112926885	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397507544		P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			356	186	475	2	ENST00000351677.2:c.1505C>T	p.Ser502Leu	p.S502L	ENST00000351677	NM_002834.3	502	tCa/tTa																																																																															
CDH1	999	MSKCC	GRCh37	16	68857311	68857312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			131	157	355	0	ENST00000261769.5:c.1947dup	p.Ile650TyrfsTer13	p.I650Yfs*13	ENST00000261769	NM_004360.3	649	tct/tcTt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			235	121	329	0	ENST00000250448.2:c.798C>G	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttG																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604787	48604787	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			143	175	356	0	ENST00000342988.3:c.1609G>C	p.Asp537His	p.D537H	ENST00000342988	NM_005359.5	537	Gac/Cac																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343545	343545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			495	279	657	4	ENST00000262320.3:c.2129C>T	p.Ala710Val	p.A710V	ENST00000262320	NM_003502.3	710	gCg/gTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29652996	29652996	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			165	184	391	1	ENST00000358273.4:c.4998del	p.Pro1667LeufsTer31	p.P1667Lfs*31	ENST00000358273	NM_001042492.2	1665	gTt/gt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223262	36223262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			567	390	877	2	ENST00000222270.7:c.5812C>T	p.Gln1938Ter	p.Q1938*	ENST00000222270	NM_014727.1	1938	Cag/Tag																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94163105	94163105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			455	190	395	2	ENST00000323929.3:c.2042C>T	p.Ser681Leu	p.S681L	ENST00000323929	NM_005591.3	681	tCg/tTg																																																																															
REL	5966	MSKCC	GRCh37	2	61147720	61147720	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	174	315	0	ENST00000295025.8:c.1030G>C	p.Glu344Gln	p.E344Q	ENST00000295025	NM_002908.2	344	Gag/Cag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65332564	65332564	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			291	156	273	0	ENST00000342505.4:c.975G>A	p.Trp325Ter	p.W325*	ENST00000342505	NM_002227.2	325	tgG/tgA																																																																															
SLX4	84464	MSKCC	GRCh37	16	3656563	3656563	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			529	348	612	0	ENST00000294008.3:c.672G>C	p.Leu224Phe	p.L224F	ENST00000294008	NM_032444.2	224	ttG/ttC																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272029	15272029	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			444	246	748	0	ENST00000263388.2:c.6410del	p.Leu2137ArgfsTer12	p.L2137Rfs*12	ENST00000263388	NM_000435.2	2137	cTg/cg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919726	50919726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			534	246	845	1	ENST00000440232.2:c.2894C>T	p.Pro965Leu	p.P965L	ENST00000440232	NM_002691.3	965	cCc/cTc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198283238	198283238	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			657	49	379	0	ENST00000335508.6:c.490G>C	p.Glu164Gln	p.E164Q	ENST00000335508	NM_012433.2	164	Gaa/Caa																																																																															
RAC2	5880	MSKCC	GRCh37	22	37637671	37637671	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			537	266	668	0	ENST00000249071.6:c.63C>G	p.Ile21Met	p.I21M	ENST00000249071	NM_002872.4	21	atC/atG																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163667	47163667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			158	171	277	0	ENST00000409792.3:c.2459C>T	p.Ser820Phe	p.S820F	ENST00000409792	NM_014159.6	820	tCt/tTt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191526	185191526	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	232	504	3	ENST00000265026.3:c.2407C>T	p.Arg803Ter	p.R803*	ENST00000265026	NM_004721.4	803	Cga/Tga																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1940177	1940177	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			122	83	108	0	ENST00000382891.5:c.1675-1G>A		p.X559_splice	ENST00000382891	NM_133335.3	559																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66467500	66467500	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	69	368	1	ENST00000273854.3:c.769G>C	p.Glu257Gln	p.E257Q	ENST00000273854	NM_004439.5	257	Gaa/Caa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672089	30672089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	257	605	1	ENST00000376406.3:c.4871C>T	p.Ser1624Phe	p.S1624F	ENST00000376406	NM_014641.2	1624	tCc/tTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166722	32166722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147749837		P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			643	339	630	1	ENST00000375023.3:c.4516G>A	p.Glu1506Lys	p.E1506K	ENST00000375023	NM_004557.3	1506	Gag/Aag																																																																															
ATRX	546	MSKCC	GRCh37	X	76763954	76763954	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			369	237	508	0	ENST00000373344.5:c.7354C>T	p.Gln2452Ter	p.Q2452*	ENST00000373344	NM_000489.3	2452	Cag/Tag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285051	15285052	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGG			P-0049190-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			490	250	651	0	ENST00000263388.2:c.4563_4564insCCG	p.Pro1521dup	p.P1521dup	ENST00000263388	NM_000435.2	1521	-/CCG																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8075676	8075676	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	26	301	0	ENST00000377482.5:c.4T>C	p.Ser2Pro	p.S2P	ENST00000377482	NM_018948.3	2	Tca/Cca																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9776497	9776497	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	127	571	0	ENST00000377346.4:c.601-1G>A		p.X201_splice	ENST00000377346	NM_005026.3	201																																																																																
MTOR	2475	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587777894		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	16	449	0	ENST00000361445.4:c.6644C>A	p.Ser2215Tyr	p.S2215Y	ENST00000361445	NM_004958.3	2215	tCt/tAt																																																																															
CDC42	998	MSKCC	GRCh37	1	22417932	22417932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	20	148	0	ENST00000344548.3:c.498G>T	p.Lys166Asn	p.K166N	ENST00000344548	NM_001039802.1	166	aaG/aaT																																																																															
ID3	3399	MSKCC	GRCh37	1	23885723	23885723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	140	627	0	ENST00000374561.5:c.195C>A	p.Ser65Arg	p.S65R	ENST00000374561	NM_002167.4	65	agC/agA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106482	27106482	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	183	509	0	ENST00000324856.7:c.6093T>G	p.Tyr2031Ter	p.Y2031*	ENST00000324856	NM_006015.4	2031	taT/taG																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39321465	39321465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	35	407	0	ENST00000373001.3:c.556G>T	p.Asp186Tyr	p.D186Y	ENST00000373001	NM_022157.3	186	Gat/Tat																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45796887	45796887	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	171	571	0	ENST00000372115.3:c.1401T>G	p.Phe467Leu	p.F467L	ENST00000372115	NM_001048171.1	467	ttT/ttG																																																																															
JAK1	3716	MSKCC	GRCh37	1	65301084	65301084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	44	200	0	ENST00000342505.4:c.3364G>T	p.Asp1122Tyr	p.D1122Y	ENST00000342505	NM_002227.2	1122	Gat/Tat																																																																															
MCL1	4170	MSKCC	GRCh37	1	150550850	150550850	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	143	319	0	ENST00000369026.2:c.806C>A	p.Ser269Tyr	p.S269Y	ENST00000369026	NM_021960.4	269	tCt/tAt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162743290	162743290	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	41	247	0	ENST00000367921.3:c.1760A>C	p.Lys587Thr	p.K587T	ENST00000367921	NM_006182.2	587	aAa/aCa																																																																															
NUF2	83540	MSKCC	GRCh37	1	163306627	163306627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	135	249	0	ENST00000271452.3:c.424C>A	p.Leu142Ile	p.L142I	ENST00000271452	NM_145697.2	142	Ctt/Att																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111132	193111132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	72	311	0	ENST00000367435.3:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000367435	NM_024529.4	222	cGa/cAa																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206665005	206665005	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	81	409	0	ENST00000367120.3:c.1758A>C	p.Lys586Asn	p.K586N	ENST00000367120	NM_014002.3	586	aaA/aaC																																																																															
PARP1	142	MSKCC	GRCh37	1	226589979	226589979	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	109	525	0	ENST00000366794.5:c.222C>A	p.Phe74Leu	p.F74L	ENST00000366794	NM_001618.3	74	ttC/ttA																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828104	243828104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	114	293	0	ENST00000263826.5:c.254G>T	p.Arg85Ile	p.R85I	ENST00000263826	NM_005465.4	85	aGa/aTa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115837	8115837	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200935603		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	43	501	0	ENST00000346208.3:c.1183G>A	p.Ala395Thr	p.A395T	ENST00000346208		395	Gcc/Acc																																																																															
TET1	80312	MSKCC	GRCh37	10	70333990	70333990	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	58	238	0	ENST00000373644.4:c.1895C>A	p.Ser632Tyr	p.S632Y	ENST00000373644	NM_030625.2	632	tCt/tAt																																																																															
ATM	472	MSKCC	GRCh37	11	108106400	108106400	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	47	141	0	ENST00000278616.4:c.335C>A	p.Ala112Glu	p.A112E	ENST00000278616	NM_000051.3	112	gCa/gAa																																																																															
ATM	472	MSKCC	GRCh37	11	108181037	108181037	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	54	243	0	ENST00000278616.4:c.5913G>T	p.Glu1971Asp	p.E1971D	ENST00000278616	NM_000051.3	1971	gaG/gaT																																																																															
ATM	472	MSKCC	GRCh37	11	108201008	108201008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	87	353	0	ENST00000278616.4:c.7375C>T	p.Arg2459Cys	p.R2459C	ENST00000278616	NM_000051.3	2459	Cgt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108203492	108203492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138941496		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	21	193	0	ENST00000278616.4:c.7792C>T	p.Arg2598Ter	p.R2598*	ENST00000278616	NM_000051.3	2598	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374685	118374685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	69	261	0	ENST00000534358.1:c.8078C>A	p.Ser2693Tyr	p.S2693Y	ENST00000534358	NM_005933.3	2693	tCt/tAt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552721	18552721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	152	487	0	ENST00000266497.5:c.2132C>T	p.Thr711Ile	p.T711I	ENST00000266497		711	aCc/aTc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644588	21644588	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	81	376	1	ENST00000421138.2:c.79G>T	p.Glu27Ter	p.E27*	ENST00000421138		27	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	63	299	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
ARID2	196528	MSKCC	GRCh37	12	46125024	46125024	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	57	183	0	ENST00000334344.6:c.211G>T	p.Glu71Ter	p.E71*	ENST00000334344	NM_152641.2	71	Gaa/Taa																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50490648	50490648	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	44	402	2	ENST00000394963.4:c.1285G>T	p.Glu429Ter	p.E429*	ENST00000394963	NM_003076.4	429	Gaa/Taa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481696	56481696	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	231	614	0	ENST00000267101.3:c.731T>G	p.Phe244Cys	p.F244C	ENST00000267101	NM_001982.3	244	tTt/tGt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56491010	56491010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	103	495	0	ENST00000267101.3:c.2456C>T	p.Ala819Val	p.A819V	ENST00000267101	NM_001982.3	819	gCc/gTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133249857	133249857	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	145	392	0	ENST00000320574.5:c.1366G>C	p.Ala456Pro	p.A456P	ENST00000320574	NM_006231.2	456	Gcc/Ccc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26911760	26911760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	59	285	0	ENST00000381527.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000381527	NM_001260.1	62	tCg/tTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953980	32953980	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	83	289	0	ENST00000380152.3:c.9047C>A	p.Ser3016Tyr	p.S3016Y	ENST00000380152		3016	tCt/tAt																																																																															
RB1	5925	MSKCC	GRCh37	13	48941730	48941730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	73	196	0	ENST00000267163.4:c.1040C>A	p.Ser347Tyr	p.S347Y	ENST00000267163	NM_000321.2	347	tCt/tAt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103504590	103504590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	83	221	0	ENST00000355739.4:c.211C>T	p.Arg71Cys	p.R71C	ENST00000355739	NM_000123.3	71	Cgt/Tgt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103520572	103520572	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	47	219	0	ENST00000355739.4:c.2643C>A	p.Phe881Leu	p.F881L	ENST00000355739	NM_000123.3	881	ttC/ttA																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436784	110436784	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	129	679	1	ENST00000375856.3:c.1617C>A	p.Phe539Leu	p.F539L	ENST00000375856	NM_003749.2	539	ttC/ttA																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066879	30066879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	130	419	1	ENST00000331968.5:c.2252C>T	p.Ala751Val	p.A751V	ENST00000331968	NM_002742.2	751	gCt/gTt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30093456	30093456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	62	238	0	ENST00000331968.5:c.1807C>T	p.Arg603Cys	p.R603C	ENST00000331968	NM_002742.2	603	Cgt/Tgt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107713	30107713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	81	410	0	ENST00000331968.5:c.967G>A	p.Glu323Lys	p.E323K	ENST00000331968	NM_002742.2	323	Gaa/Aaa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609467	81609467	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	81	347	0	ENST00000298171.2:c.1065C>A	p.Phe355Leu	p.F355L	ENST00000298171	NM_000369.2	355	ttC/ttA																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570126	95570126	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	119	345	0	ENST00000343455.3:c.3607A>C	p.Asn1203His	p.N1203H	ENST00000343455	NM_177438.2	1203	Aat/Cat																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570342	95570342	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	116	260	0	ENST00000343455.3:c.3391A>G	p.Asn1131Asp	p.N1131D	ENST00000343455	NM_177438.2	1131	Aat/Gat																																																																															
DICER1	23405	MSKCC	GRCh37	14	95574292	95574292	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144649926		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	44	250	0	ENST00000343455.3:c.2575C>T	p.Arg859Trp	p.R859W	ENST00000343455	NM_177438.2	859	Cgg/Tgg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749343	43749343	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	171	423	0	ENST00000382044.4:c.1463C>A	p.Ser488Ter	p.S488*	ENST00000382044	NM_001141980.1	488	tCa/tAa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43766897	43766897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	54	248	0	ENST00000382044.4:c.1154G>A	p.Ser385Asn	p.S385N	ENST00000382044	NM_001141980.1	385	aGt/aAt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43766924	43766924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	21	244	0	ENST00000382044.4:c.1127G>A	p.Arg376Gln	p.R376Q	ENST00000382044	NM_001141980.1	376	cGa/cAa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43769790	43769790	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	83	372	0	ENST00000382044.4:c.955+1G>A		p.X319_splice	ENST00000382044	NM_001141980.1	319																																																																																
MAP2K1	5604	MSKCC	GRCh37	15	66735647	66735647	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	78	307	1	ENST00000307102.5:c.468G>T	p.Lys156Asn	p.K156N	ENST00000307102	NM_002755.3	156	aaG/aaT																																																																															
BLM	641	MSKCC	GRCh37	15	91312398	91312398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	122	362	1	ENST00000355112.3:c.2343G>T	p.Glu781Asp	p.E781D	ENST00000355112	NM_000057.2	781	gaG/gaT																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640538	3640538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150453226		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	98	697	2	ENST00000294008.3:c.3101G>A	p.Arg1034His	p.R1034H	ENST00000294008	NM_032444.2	1034	cGc/cAc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041527	14041527	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	104	352	1	ENST00000311895.7:c.2074C>T	p.Arg692Ter	p.R692*	ENST00000311895	NM_005236.2	692	Cga/Tga																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041854	14041854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	95	331	1	ENST00000311895.7:c.2401C>A	p.Leu801Ile	p.L801I	ENST00000311895	NM_005236.2	801	Ctc/Atc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783688	50783688	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	128	384	1	ENST00000398568.2:c.79G>T	p.Glu27Ter	p.E27*	ENST00000398568	NM_001042412.1	27	Gaa/Taa																																																																															
CDH1	999	MSKCC	GRCh37	16	68857517	68857517	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	142	379	0	ENST00000261769.5:c.2152C>A	p.Leu718Ile	p.L718I	ENST00000261769	NM_004360.3	718	Ctt/Att																																																																															
CDH1	999	MSKCC	GRCh37	16	68867274	68867274	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377489352		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	86	454	2	ENST00000261769.5:c.2521G>A	p.Glu841Lys	p.E841K	ENST00000261769	NM_004360.3	841	Gaa/Aaa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81892729	81892729	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	101	265	0	ENST00000359376.3:c.440G>T	p.Arg147Ile	p.R147I	ENST00000359376	NM_002661.3	147	aGa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	72	523	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16040679	16040679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	93	318	0	ENST00000268712.3:c.1455G>T	p.Glu485Asp	p.E485D	ENST00000268712	NM_006311.3	485	gaG/gaT																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16089913	16089913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	122	319	0	ENST00000268712.3:c.197G>A	p.Arg66Gln	p.R66Q	ENST00000268712	NM_006311.3	66	cGa/cAa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17117090	17117090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	187	494	1	ENST00000285071.4:c.1619G>A	p.Gly540Asp	p.G540D	ENST00000285071	NM_144997.5	540	gGt/gAt																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30302704	30302704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	46	321	0	ENST00000322652.5:c.795G>T	p.Met265Ile	p.M265I	ENST00000322652	NM_015355.2	265	atG/atT																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627887	37627887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	136	450	0	ENST00000447079.4:c.1802C>A	p.Ser601Tyr	p.S601Y	ENST00000447079	NM_015083.1	601	tCt/tAt																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870068	40870068	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	110	286	0	ENST00000428826.2:c.949A>C	p.Asn317His	p.N317H	ENST00000428826		317	Aat/Cat																																																																															
BRCA1	672	MSKCC	GRCh37	17	41209086	41209086	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	83	487	1	ENST00000357654.3:c.5260G>T	p.Glu1754Ter	p.E1754*	ENST00000357654	NM_007294.3	1754	Gaa/Taa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245080	41245080	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876659731		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	142	496	0	ENST00000357654.3:c.2468G>T	p.Arg823Ile	p.R823I	ENST00000357654	NM_007294.3	823	aGa/aTa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59886057	59886057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	95	387	0	ENST00000259008.2:c.689C>T	p.Ser230Leu	p.S230L	ENST00000259008	NM_032043.2	230	tCg/tTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212433	5212433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	127	634	1	ENST00000357368.4:c.4684G>A	p.Glu1562Lys	p.E1562K	ENST00000357368	NM_002850.3	1562	Gaa/Aaa																																																																															
INSR	3643	MSKCC	GRCh37	19	7267855	7267855	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	142	410	0	ENST00000302850.5:c.153G>T	p.Glu51Asp	p.E51D	ENST00000302850	NM_000208.2	51	gaG/gaT																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271691	15271691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	64	814	1	ENST00000263388.2:c.6748G>A	p.Glu2250Lys	p.E2250K	ENST00000263388	NM_000435.2	2250	Gaa/Aaa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955169	17955169	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	230	659	0	ENST00000458235.1:c.58T>C	p.Ser20Pro	p.S20P	ENST00000458235	NM_000215.3	20	Tcc/Ccc																																																																															
AXL	558	MSKCC	GRCh37	19	41763500	41763500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	113	453	0	ENST00000301178.4:c.2299C>T	p.Arg767Cys	p.R767C	ENST00000301178	NM_021913.4	767	Cgc/Tgc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25976426	25976426	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	87	348	0	ENST00000435504.4:c.1119C>A	p.Phe373Leu	p.F373L	ENST00000435504		373	ttC/ttA																																																																															
ALK	238	MSKCC	GRCh37	2	30143162	30143162	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	169	711	0	ENST00000389048.3:c.364A>G	p.Thr122Ala	p.T122A	ENST00000389048	NM_004304.4	122	Acg/Gcg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47635547	47635547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	77	222	1	ENST00000233146.2:c.219G>T	p.Lys73Asn	p.K73N	ENST00000233146	NM_000251.2	73	aaG/aaT																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027593	48027593	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	69	220	0	ENST00000234420.5:c.2471A>C	p.Lys824Thr	p.K824T	ENST00000234420	NM_000179.2	824	aAa/aCa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033767	48033767	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141464646		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	18	225	0	ENST00000234420.5:c.3978G>A	p.Met1326Ile	p.M1326I	ENST00000234420	NM_000179.2	1326	atG/atA																																																																															
XPO1	7514	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	19	335	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99193519	99193519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	235	639	0	ENST00000074304.5:c.2714C>T	p.Ser905Leu	p.S905L	ENST00000074304	NM_001134224.1	905	tCg/tTg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095836	178095836	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1328262363		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	84	333	0	ENST00000397062.3:c.1495C>T	p.Arg499Trp	p.R499W	ENST00000397062	NM_006164.4	499	Cgg/Tgg																																																																															
CASP8	841	MSKCC	GRCh37	2	202131398	202131398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	81	370	0	ENST00000358485.4:c.366G>T	p.Lys122Asn	p.K122N	ENST00000358485	NM_001080125.1	122	aaG/aaT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212495199	212495199	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	99	322	0	ENST00000342788.4:c.2067C>A	p.Phe689Leu	p.F689L	ENST00000342788	NM_005235.2	689	ttC/ttA																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812335	212812335	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	38	207	0	ENST00000342788.4:c.241C>T	p.Arg81Ter	p.R81*	ENST00000342788	NM_005235.2	81	Cga/Tga																																																																															
INHA	3623	MSKCC	GRCh37	2	220439839	220439839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	55	745	2	ENST00000243786.2:c.692G>A	p.Arg231Gln	p.R231Q	ENST00000243786	NM_002191.3	231	cGa/cAa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661596	227661596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	145	682	0	ENST00000305123.5:c.1859C>T	p.Ala620Val	p.A620V	ENST00000305123	NM_005544.2	620	gCc/gTc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546937	9546937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	39	443	0	ENST00000353224.5:c.1085G>T	p.Ser362Ile	p.S362I	ENST00000353224	NM_177990.2	362	aGc/aTc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561352	9561352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	113	337	0	ENST00000353224.5:c.430G>A	p.Glu144Lys	p.E144K	ENST00000353224	NM_177990.2	144	Gaa/Aaa																																																																															
SRC	6714	MSKCC	GRCh37	20	36028609	36028609	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	114	588	2	ENST00000358208.4:c.951G>T	p.Met317Ile	p.M317I	ENST00000358208		317	atG/atT																																																																															
TOP1	7150	MSKCC	GRCh37	20	39725963	39725963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	47	217	0	ENST00000361337.2:c.834C>A	p.Phe278Leu	p.F278L	ENST00000361337	NM_003286.2	278	ttC/ttA																																																																															
TOP1	7150	MSKCC	GRCh37	20	39728716	39728716	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	19	235	0	ENST00000361337.2:c.996A>C	p.Glu332Asp	p.E332D	ENST00000361337	NM_003286.2	332	gaA/gaC																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40747091	40747091	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	99	519	1	ENST00000373198.4:c.2991G>T	p.Glu997Asp	p.E997D	ENST00000373198	NM_133170.3	997	gaG/gaT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40757468	40757468	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	38	507	0	ENST00000373198.4:c.2830G>A	p.Asp944Asn	p.D944N	ENST00000373198	NM_133170.3	944	Gac/Aac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770576	40770576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	111	391	1	ENST00000373198.4:c.2806C>T	p.Arg936Ter	p.R936*	ENST00000373198	NM_133170.3	936	Cga/Tga																																																																															
AURKA	6790	MSKCC	GRCh37	20	54948603	54948603	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	53	282	0	ENST00000312783.6:c.715G>T	p.Glu239Ter	p.E239*	ENST00000312783	NM_198436.1	239	Gaa/Taa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44514895	44514895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	131	281	0	ENST00000291552.4:c.352C>T	p.Arg118Cys	p.R118C	ENST00000291552	NM_006758.2	118	Cgc/Tgc																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22153317	22153317	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	115	379	0	ENST00000215832.6:c.593T>G	p.Ile198Ser	p.I198S	ENST00000215832	NM_002745.4	198	aTt/aGt																																																																															
NF2	4771	MSKCC	GRCh37	22	30050676	30050676	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150667239		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	81	342	0	ENST00000338641.4:c.478C>T	p.Arg160Trp	p.R160W	ENST00000338641	NM_000268.3	160	Cgg/Tgg																																																																															
EP300	2033	MSKCC	GRCh37	22	41533773	41533773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	143	369	1	ENST00000263253.7:c.1739G>A	p.Arg580Gln	p.R580Q	ENST00000263253	NM_001429.3	580	cGa/cAa																																																																															
PPARG	5468	MSKCC	GRCh37	3	12421225	12421225	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	114	411	0	ENST00000287820.6:c.105G>T	p.Glu35Asp	p.E35D	ENST00000287820	NM_015869.4	35	gaG/gaT																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275240	41275240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	68	360	0	ENST00000349496.5:c.1406G>A	p.Arg469His	p.R469H	ENST00000349496	NM_001904.3	469	cGt/cAt																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799675	72799675	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	164	482	0	ENST00000325599.8:c.1494A>C	p.Glu498Asp	p.E498D	ENST00000325599	NM_018130.2	498	gaA/gaC																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390072	89390072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	65	221	0	ENST00000336596.2:c.821G>A	p.Arg274Gln	p.R274Q	ENST00000336596	NM_005233.5	274	cGa/cAa																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119721084	119721084	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	40	330	0	ENST00000316626.5:c.91G>A	p.Asp31Asn	p.D31N	ENST00000316626		31	Gac/Aac																																																																															
ATR	545	MSKCC	GRCh37	3	142177859	142177859	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	65	294	0	ENST00000350721.4:c.7444C>A	p.Leu2482Ile	p.L2482I	ENST00000350721	NM_001184.3	2482	Ctc/Atc																																																																															
ATR	545	MSKCC	GRCh37	3	142180899	142180899	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	77	300	1	ENST00000350721.4:c.7075G>T	p.Glu2359Ter	p.E2359*	ENST00000350721	NM_001184.3	2359	Gaa/Taa																																																																															
ATR	545	MSKCC	GRCh37	3	142268410	142268410	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	106	316	0	ENST00000350721.4:c.3082A>C	p.Ile1028Leu	p.I1028L	ENST00000350721	NM_001184.3	1028	Att/Ctt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	67	453	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178942585	178942585	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	82	248	0	ENST00000263967.3:c.2392G>T	p.Glu798Ter	p.E798*	ENST00000263967	NM_006218.2	798	Gag/Tag																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155297	185155297	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	65	343	0	ENST00000265026.3:c.538G>T	p.Gly180Ter	p.G180*	ENST00000265026	NM_004721.4	180	Gga/Tga																																																																															
BCL6	604	MSKCC	GRCh37	3	187447327	187447327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	153	483	0	ENST00000232014.4:c.866G>A	p.Arg289Gln	p.R289Q	ENST00000232014	NM_001130845.1	289	cGa/cAa																																																																															
BCL6	604	MSKCC	GRCh37	3	187447384	187447384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780987785		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	110	517	1	ENST00000232014.4:c.809G>A	p.Arg270Gln	p.R270Q	ENST00000232014	NM_001130845.1	270	cGa/cAa																																																																															
TP63	8626	MSKCC	GRCh37	3	189587113	189587113	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs148052765		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	87	259	0	ENST00000264731.3:c.1130C>T	p.Pro377Leu	p.P377L	ENST00000264731	NM_003722.4	377	cCg/cTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55976666	55976666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	70	476	0	ENST00000263923.4:c.1159G>A	p.Glu387Lys	p.E387K	ENST00000263923	NM_002253.2	387	Gaa/Aaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213879	66213879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	32	352	1	ENST00000273854.3:c.2551G>A	p.Ala851Thr	p.A851T	ENST00000273854	NM_004439.5	851	Gct/Act																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280017	66280017	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	49	161	0	ENST00000273854.3:c.1672G>T	p.Glu558Ter	p.E558*	ENST00000273854	NM_004439.5	558	Gaa/Taa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286238	66286238	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	71	313	0	ENST00000273854.3:c.1448A>G	p.Asn483Ser	p.N483S	ENST00000273854	NM_004439.5	483	aAc/aGc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249503	153249503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	72	407	0	ENST00000281708.4:c.1275G>A	p.Trp425Ter	p.W425*	ENST00000281708	NM_033632.3	425	tgG/tgA																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153253835	153253835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	51	268	0	ENST00000281708.4:c.898G>T	p.Asp300Tyr	p.D300Y	ENST00000281708	NM_033632.3	300	Gac/Tac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332708	153332708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	32	307	0	ENST00000281708.4:c.248G>T	p.Arg83Ile	p.R83I	ENST00000281708	NM_033632.3	83	aGa/aTa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31423030	31423030	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	105	381	1	ENST00000344624.3:c.3283C>T	p.Arg1095Ter	p.R1095*	ENST00000344624		1095	Cga/Tga																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871249	35871249	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	112	256	0	ENST00000303115.3:c.471G>T	p.Lys157Asn	p.K157N	ENST00000303115	NM_002185.3	157	aaG/aaT																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950420	38950420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	78	324	0	ENST00000357387.3:c.3530G>A	p.Ser1177Asn	p.S1177N	ENST00000357387	NM_152756.3	1177	aGc/aAc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752845	57752845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	61	314	0	ENST00000274289.3:c.1083G>T	p.Lys361Asn	p.K361N	ENST00000274289	NM_006622.3	361	aaG/aaT																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522657	67522657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	21	263	0	ENST00000274335.5:c.154G>T	p.Glu52Ter	p.E52*	ENST00000274335		52	Gaa/Taa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79965931	79965931	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	101	343	0	ENST00000265081.6:c.595G>T	p.Asp199Tyr	p.D199Y	ENST00000265081	NM_002439.4	199	Gat/Tat																																																																															
MSH3	4437	MSKCC	GRCh37	5	80040402	80040402	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	135	337	2	ENST00000265081.6:c.1731G>T	p.Lys577Asn	p.K577N	ENST00000265081	NM_002439.4	577	aaG/aaT																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685313	86685313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	48	185	0	ENST00000274376.6:c.3029G>A	p.Arg1010Gln	p.R1010Q	ENST00000274376	NM_002890.2	1010	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112174149	112174149	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	44	254	0	ENST00000257430.4:c.2858A>C	p.Lys953Thr	p.K953T	ENST00000257430	NM_000038.5	953	aAa/aCa																																																																															
APC	324	MSKCC	GRCh37	5	112174793	112174793	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	74	192	0	ENST00000257430.4:c.3502G>T	p.Glu1168Ter	p.E1168*	ENST00000257430	NM_000038.5	1168	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175457	112175457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	68	273	0	ENST00000257430.4:c.4166C>A	p.Ser1389Tyr	p.S1389Y	ENST00000257430	NM_000038.5	1389	tCt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112175921	112175921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	46	161	0	ENST00000257430.4:c.4630G>T	p.Glu1544Ter	p.E1544*	ENST00000257430	NM_000038.5	1544	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112176234	112176234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	78	332	0	ENST00000257430.4:c.4943C>A	p.Pro1648His	p.P1648H	ENST00000257430	NM_000038.5	1648	cCt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112177170	112177170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	63	254	0	ENST00000257430.4:c.5879C>T	p.Pro1960Leu	p.P1960L	ENST00000257430	NM_000038.5	1960	cCg/cTg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149441098	149441098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	178	497	0	ENST00000286301.3:c.1814G>T	p.Gly605Val	p.G605V	ENST00000286301	NM_005211.3	605	gGc/gTc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637721	176637721	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	145	425	0	ENST00000439151.2:c.2321A>C	p.Asn774Thr	p.N774T	ENST00000439151	NM_022455.4	774	aAt/aCt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638456	176638456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	157	512	0	ENST00000439151.2:c.3056G>A	p.Arg1019His	p.R1019H	ENST00000439151	NM_022455.4	1019	cGc/cAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176662922	176662922	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	75	233	2	ENST00000439151.2:c.3897G>T	p.Lys1299Asn	p.K1299N	ENST00000439151	NM_022455.4	1299	aaG/aaT																																																																															
NSD1	64324	MSKCC	GRCh37	5	176665349	176665349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	131	333	0	ENST00000439151.2:c.4033C>A	p.Leu1345Ile	p.L1345I	ENST00000439151	NM_022455.4	1345	Ctt/Att																																																																															
FLT4	2324	MSKCC	GRCh37	5	180041073	180041073	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	182	681	0	ENST00000261937.6:c.3326C>A	p.Ser1109Tyr	p.S1109Y	ENST00000261937	NM_182925.4	1109	tCt/tAt																																																																															
IRF4	3662	MSKCC	GRCh37	6	393155	393155	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	81	386	0	ENST00000380956.4:c.3G>T	p.Met1?	p.M1?	ENST00000380956	NM_001195286.1	1	atG/atT																																																																															
IRF4	3662	MSKCC	GRCh37	6	407458	407458	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	69	192	0	ENST00000380956.4:c.1216G>T	p.Glu406Ter	p.E406*	ENST00000380956	NM_001195286.1	406	Gaa/Taa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675856	30675856	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	185	505	2	ENST00000376406.3:c.2500G>T	p.Glu834Ter	p.E834*	ENST00000376406	NM_014641.2	834	Gaa/Taa																																																																															
TAP1	6890	MSKCC	GRCh37	6	32814855	32814855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	94	532	1	ENST00000354258.4:c.2210G>A	p.Ser737Asn	p.S737N	ENST00000354258	NM_000593.5	737	aGc/aAc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816451	32816451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	115	531	1	ENST00000354258.4:c.1724G>A	p.Arg575His	p.R575H	ENST00000354258	NM_000593.5	575	cGc/cAc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288234	33288234	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	43	482	0	ENST00000374542.5:c.1174A>C	p.Lys392Gln	p.K392Q	ENST00000374542	NM_001141970.1	392	Aaa/Caa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120612	94120612	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	62	322	0	ENST00000369303.4:c.439G>T	p.Asp147Tyr	p.D147Y	ENST00000369303	NM_004440.3	147	Gac/Tac																																																																															
ROS1	6098	MSKCC	GRCh37	6	117622241	117622241	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	28	355	0	ENST00000368508.3:c.6629G>T	p.Arg2210Ile	p.R2210I	ENST00000368508	NM_002944.2	2210	aGa/aTa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117677962	117677962	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	72	355	0	ENST00000368508.3:c.3971G>T	p.Arg1324Met	p.R1324M	ENST00000368508	NM_002944.2	1324	aGg/aTg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117678991	117678991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	96	301	0	ENST00000368508.3:c.3830C>A	p.Ser1277Tyr	p.S1277Y	ENST00000368508	NM_002944.2	1277	tCt/tAt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117714464	117714464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	76	256	1	ENST00000368508.3:c.1185G>T	p.Glu395Asp	p.E395D	ENST00000368508	NM_002944.2	395	gaG/gaT																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202424	138202424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	186	560	0	ENST00000237289.4:c.2341G>A	p.Glu781Lys	p.E781K	ENST00000237289	NM_001270507.1	781	Gaa/Aaa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984024	2984024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	41	512	0	ENST00000396946.4:c.506C>T	p.Thr169Met	p.T169M	ENST00000396946	NM_032415.4	169	aCg/aTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509697	106509697	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	133	458	0	ENST00000359195.3:c.1691T>G	p.Leu564Arg	p.L564R	ENST00000359195	NM_002649.2	564	cTt/cGt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526619	106526619	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	84	324	0	ENST00000359195.3:c.2912A>C	p.Asn971Thr	p.N971T	ENST00000359195	NM_002649.2	971	aAt/aCt																																																																															
SMO	6608	MSKCC	GRCh37	7	128846366	128846366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	99	550	3	ENST00000249373.3:c.1202C>T	p.Ala401Val	p.A401V	ENST00000249373	NM_005631.4	401	gCg/gTg																																																																															
SMO	6608	MSKCC	GRCh37	7	128846374	128846374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	115	542	0	ENST00000249373.3:c.1210G>A	p.Val404Met	p.V404M	ENST00000249373	NM_005631.4	404	Gtg/Atg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148523717	148523717	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	83	215	0	ENST00000320356.2:c.736G>T	p.Glu246Ter	p.E246*	ENST00000320356	NM_004456.4	246	Gaa/Taa																																																																															
EZH2	2146	MSKCC	GRCh37	7	148529736	148529736	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	46	204	0	ENST00000320356.2:c.353A>T	p.Gln118Leu	p.Q118L	ENST00000320356	NM_004456.4	118	cAg/cTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945109	151945109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	31	312	0	ENST00000262189.6:c.2410C>T	p.Leu804Phe	p.L804F	ENST00000262189	NM_170606.2	804	Ctt/Ttt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68942848	68942848	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	161	494	0	ENST00000288368.4:c.660G>T	p.Lys220Asn	p.K220N	ENST00000288368	NM_024870.2	220	aaG/aaT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69069589	69069589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	105	335	0	ENST00000288368.4:c.4264G>T	p.Asp1422Tyr	p.D1422Y	ENST00000288368	NM_024870.2	1422	Gac/Tac																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980517	70980517	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	131	503	0	ENST00000276594.2:c.860T>G	p.Val287Gly	p.V287G	ENST00000276594	NM_024504.3	287	gTg/gGg																																																																															
NBN	4683	MSKCC	GRCh37	8	90955525	90955525	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	27	357	0	ENST00000265433.3:c.2140C>T	p.Arg714Ter	p.R714*	ENST00000265433	NM_002485.4	714	Cga/Tga																																																																															
RAD21	5885	MSKCC	GRCh37	8	117875450	117875450	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	43	361	0	ENST00000297338.2:c.193C>T	p.Arg65Ter	p.R65*	ENST00000297338	NM_006265.2	65	Cga/Tga																																																																															
MYC	4609	MSKCC	GRCh37	8	128750980	128750980	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	86	453	0	ENST00000377970.2:c.517G>T	p.Asp173Tyr	p.D173Y	ENST00000377970	NM_002467.4	173	Gac/Tac																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87563491	87563491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	108	487	2	ENST00000277120.3:c.1879G>A	p.Asp627Asn	p.D627N	ENST00000277120		627	Gac/Aac																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229562	98229562	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	65	358	3	ENST00000331920.6:c.2396C>A	p.Ser799Tyr	p.S799Y	ENST00000331920	NM_000264.3	799	tCt/tAt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933958	39933958	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	154	288	0	ENST00000378444.4:c.641C>A	p.Ser214Ter	p.S214*	ENST00000378444	NM_001123385.1	214	tCa/tAa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53250046	53250046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	46	216	0	ENST00000375401.3:c.203G>A	p.Arg68Gln	p.R68Q	ENST00000375401	NM_004187.3	68	cGa/cAa																																																																															
MED12	9968	MSKCC	GRCh37	X	70342421	70342421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	178	238	0	ENST00000374080.3:c.1312C>T	p.Arg438Cys	p.R438C	ENST00000374080		438	Cgc/Tgc																																																																															
BTK	695	MSKCC	GRCh37	X	100615614	100615614	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	58	214	0	ENST00000308731.7:c.718G>T	p.Glu240Ter	p.E240*	ENST00000308731	NM_000061.2	240	Gaa/Taa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123217381	123217381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	69	172	0	ENST00000218089.9:c.3035G>A	p.Arg1012Gln	p.R1012Q	ENST00000218089	NM_001042749.1	1012	cGa/cAa																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123504025	123504025	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	52	143	0	ENST00000371139.4:c.202-1G>T		p.X68_splice	ENST00000371139	NM_001114937.2	68																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0049472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	10	451	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0049472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	12	419	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	28	374	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0049476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	243	526	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112170777	112170780	+	frameshift_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0049476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	152	494	0	ENST00000257430.4:c.1875_1878del	p.Asn627LeufsTer2	p.N627Lfs*2	ENST00000257430	NM_000038.5	625	CAGAca/ca																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30047522	30047522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	112	330	0	ENST00000331968.5:c.2479C>T	p.Arg827Cys	p.R827C	ENST00000331968	NM_002742.2	827	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591913	48591913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	24	406	0	ENST00000342988.3:c.1076G>A	p.Gly359Glu	p.G359E	ENST00000342988	NM_005359.5	359	gGa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112162943	112162946	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	INS	AGGT	AGGT	TGTTTTTATAAC			P-0049476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	77	261	0	ENST00000257430.4:c.1547_1548+2delinsTGTTTTTATAAC		p.X516_splice	ENST00000257430	NM_000038.5	516																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0049477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	77	329	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0049477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	93	569	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983190	149983190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	77	430	1	ENST00000253339.5:c.3068C>T	p.Ser1023Phe	p.S1023F	ENST00000253339		1023	tCt/tTt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346028	73346028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	34	266	0	ENST00000377767.4:c.1510G>T	p.Val504Phe	p.V504F	ENST00000377767	NM_014953.3	504	Gtt/Ttt																																																																															
ATRX	546	MSKCC	GRCh37	X	76937813	76937813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	56	447	1	ENST00000373344.5:c.2935G>A	p.Glu979Lys	p.E979K	ENST00000373344	NM_000489.3	979	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	344	607	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	202	618	2	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs879253911		P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	204	723	1	ENST00000269305.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000269305	NM_001126112.2	180	Gag/Aag																																																																															
MSH2	4436	MSKCC	GRCh37	2	47641555	47641555	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	77	216	0	ENST00000233146.2:c.940C>T	p.Gln314Ter	p.Q314*	ENST00000233146	NM_000251.2	314	Cag/Tag																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468236	50468236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	192	707	0	ENST00000331340.3:c.1471G>A	p.Glu491Lys	p.E491K	ENST00000331340	NM_006060.4	491	Gag/Aag																																																																															
RB1	5925	MSKCC	GRCh37	13	48955394	48955394	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	84	277	0	ENST00000267163.4:c.1510C>T	p.Gln504Ter	p.Q504*	ENST00000267163	NM_000321.2	504	Cag/Tag																																																																															
CBFB	865	MSKCC	GRCh37	16	67063313	67063313	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	64	179	0	ENST00000412916.2:c.3G>A	p.Met1?	p.M1?	ENST00000412916		1	atG/atA																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781092	135781092	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	156	593	0	ENST00000298552.3:c.1873G>T	p.Glu625Ter	p.E625*	ENST00000298552	NM_001162426.1	625	Gag/Tag																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324477	31324477	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	36	353	0	ENST00000412585.2:c.331C>T	p.Gln111Ter	p.Q111*	ENST00000412585	NM_005514.6	111	Cag/Tag																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113100	209113100	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	93	266	0	ENST00000345146.2:c.407G>T	p.Gly136Val	p.G136V	ENST00000345146	NM_005896.2	136	gGg/gTg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719424	190719424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	110	314	0	ENST00000441310.2:c.1426G>C	p.Asp476His	p.D476H	ENST00000441310	NM_000534.4	476	Gat/Cat																																																																															
EP300	2033	MSKCC	GRCh37	22	41543909	41543909	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	147	612	0	ENST00000263253.7:c.2200C>T	p.Gln734Ter	p.Q734*	ENST00000263253	NM_001429.3	734	Cag/Tag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69143584	69143584	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142298071		P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	93	372	0	ENST00000288368.4:c.4792G>A	p.Glu1598Lys	p.E1598K	ENST00000288368	NM_024870.2	1598	Gag/Aag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	401990	401990	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	160	491	0	ENST00000399788.2:c.4801G>C	p.Glu1601Gln	p.E1601Q	ENST00000399788	NM_001042603.1	1601	Gag/Cag																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111884812	111884812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	151	529	0	ENST00000341259.2:c.901G>A	p.Glu301Lys	p.E301K	ENST00000341259	NM_005475.2	301	Gag/Aag																																																																															
POLE	5426	MSKCC	GRCh37	12	133235903	133235903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	257	687	0	ENST00000320574.5:c.3253G>A	p.Glu1085Lys	p.E1085K	ENST00000320574	NM_006231.2	1085	Gag/Aag																																																																															
LATS2	26524	MSKCC	GRCh37	13	21555623	21555623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	67	657	0	ENST00000382592.4:c.2647G>A	p.Glu883Lys	p.E883K	ENST00000382592	NM_014572.2	883	Gag/Aag																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40460253	40460253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	199	671	0	ENST00000345506.4:c.1964C>T	p.Ser655Phe	p.S655F	ENST00000345506	NM_003152.3	655	tCc/tTc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40880956	40880956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	103	425	0	ENST00000428826.2:c.4G>A	p.Glu2Lys	p.E2K	ENST00000428826		2	Gaa/Aaa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220688	1220688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	206	784	0	ENST00000326873.7:c.706G>A	p.Val236Met	p.V236M	ENST00000326873	NM_000455.4	236	Gtg/Atg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621158	1621158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	253	930	1	ENST00000344749.5:c.988G>A	p.Asp330Asn	p.D330N	ENST00000344749	NM_001136139.2	330	Gat/Aat																																																																															
ALK	238	MSKCC	GRCh37	2	29445412	29445412	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	170	686	0	ENST00000389048.3:c.3421G>T	p.Asp1141Tyr	p.D1141Y	ENST00000389048	NM_004304.4	1141	Gac/Tac																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873041	136873041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	207	454	0	ENST00000241393.3:c.457G>A	p.Glu153Lys	p.E153K	ENST00000241393	NM_003467.2	153	Gaa/Aaa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31386432	31386432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	209	713	0	ENST00000328111.2:c.1657G>A	p.Asp553Asn	p.D553N	ENST00000328111	NM_006892.3	553	Gac/Aac																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52677318	52677318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	150	566	1	ENST00000394830.3:c.941C>T	p.Ser314Leu	p.S314L	ENST00000394830	NM_018313.4	314	tCa/tTa																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204977	128204977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	219	754	0	ENST00000341105.2:c.464C>T	p.Ser155Leu	p.S155L	ENST00000341105	NM_032638.4	155	tCa/tTa																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260159	149260162	+	frameshift_variant	Frame_Shift_Del	DEL	TCTC	TCTC	-			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	145	530	0	ENST00000360632.3:c.731_734del	p.Arg244LysfsTer11	p.R244Kfs*11	ENST00000360632	NM_015472.4	244	aGAGAa/aa																																																																															
TP63	8626	MSKCC	GRCh37	3	189584533	189584533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	143	399	0	ENST00000264731.3:c.829G>A	p.Glu277Lys	p.E277K	ENST00000264731	NM_003722.4	277	Gaa/Aaa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143067083	143067083	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	124	494	0	ENST00000262992.4:c.1630G>T	p.Glu544Ter	p.E544*	ENST00000262992	NM_001101669.1	544	Gaa/Taa																																																																															
SDHA	6389	MSKCC	GRCh37	5	233636	233636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	42	134	0	ENST00000264932.6:c.940G>A	p.Glu314Lys	p.E314K	ENST00000264932	NM_004168.2	314	Gag/Aag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180055955	180055955	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	189	761	0	ENST00000261937.6:c.1030G>C	p.Glu344Gln	p.E344Q	ENST00000261937	NM_182925.4	344	Gag/Cag																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323241	31323241	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	136	657	0	ENST00000412585.2:c.748C>G	p.Gln250Glu	p.Q250E	ENST00000412585	NM_005514.6	250	Cag/Gag																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971133	13971133	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	75	327	0	ENST00000405192.2:c.796G>C	p.Asp266His	p.D266H	ENST00000405192	NM_001163147.1	266	Gac/Cac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878742	151878742	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	135	444	0	ENST00000262189.6:c.6203C>G	p.Ser2068Cys	p.S2068C	ENST00000262189	NM_170606.2	2068	tCt/tGt																																																																															
TEK	7010	MSKCC	GRCh37	9	27169596	27169596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	158	693	1	ENST00000380036.4:c.597C>A	p.Phe199Leu	p.F199L	ENST00000380036	NM_000459.3	199	ttC/ttA																																																																															
ABL1	25	MSKCC	GRCh37	9	133760004	133760004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	250	789	0	ENST00000318560.5:c.2327C>T	p.Thr776Ile	p.T776I	ENST00000318560	NM_005157.4	776	aCc/aTc																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20148692	20148692	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	123	195	0	ENST00000379607.5:c.371G>C	p.Gly124Ala	p.G124A	ENST00000379607	NM_001412.3	124	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0049481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	56	571	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0049481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	64	409	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528105	157528105	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	74	563	0	ENST00000346085.5:c.5830C>T	p.Arg1944Ter	p.R1944*	ENST00000346085	NM_020732.3	1944	Cga/Tga																																																																															
AR	367	MSKCC	GRCh37	X	66863151	66863151	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	10	251	0	ENST00000374690.3:c.1670A>G	p.Gln557Arg	p.Q557R	ENST00000374690	NM_000044.3	557	cAg/cGg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217678	7217678	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	54	407	0	ENST00000380728.2:c.249G>C	p.Lys83Asn	p.K83N	ENST00000380728		83	aaG/aaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	107	455	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1294328	1294328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	52	644	0	ENST00000310581.5:c.673G>A	p.Gly225Arg	p.G225R	ENST00000310581	NM_198253.2	225	Ggg/Agg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098973	178098973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	30	299	0	ENST00000397062.3:c.72G>C	p.Trp24Cys	p.W24C	ENST00000397062	NM_006164.4	24	tgG/tgC																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564743	86564743	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	29	701	0	ENST00000274376.6:c.475C>G	p.Leu159Val	p.L159V	ENST00000274376	NM_002890.2	159	Ctg/Gtg																																																																															
ALK	238	MSKCC	GRCh37	2	29455262	29455262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	53	741	0	ENST00000389048.3:c.2540G>A	p.Arg847Lys	p.R847K	ENST00000389048	NM_004304.4	847	aGg/aAg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46740354	46740354	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	71	569	0	ENST00000371975.4:c.1834C>G	p.Gln612Glu	p.Q612E	ENST00000371975	NM_003579.3	612	Caa/Gaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692835	89692835	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	27	152	0	ENST00000371953.3:c.319G>C	p.Asp107His	p.D107H	ENST00000371953	NM_000314.4	107	Gat/Cat																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925522	114925522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	60	663	0	ENST00000543371.1:c.1600C>T	p.Pro534Ser	p.P534S	ENST00000543371	NM_001198531.1	534	Ccg/Tcg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858649	57858649	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	41	493	0	ENST00000228682.2:c.387G>C	p.Met129Ile	p.M129I	ENST00000228682	NM_005269.2	129	atG/atC																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66774200	66774200	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	75	948	0	ENST00000307102.5:c.676A>T	p.Thr226Ser	p.T226S	ENST00000307102	NM_002755.3	226	Aca/Tca																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119729	70119729	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	26	413	0	ENST00000245479.2:c.731A>T	p.Asp244Val	p.D244V	ENST00000245479	NM_000346.3	244	gAc/gTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219694	36219694	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	64	825	0	ENST00000222270.7:c.4591G>T	p.Val1531Leu	p.V1531L	ENST00000222270	NM_014727.1	1531	Gtg/Ttg																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62294181	62294181	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	74	583	0	ENST00000508582.2:c.550-1G>T		p.X184_splice	ENST00000508582		184																																																																																
ERG	2078	MSKCC	GRCh37	21	39763581	39763581	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	21	375	0	ENST00000288319.7:c.871G>A	p.Asp291Asn	p.D291N	ENST00000288319	NM_182918.3	291	Gat/Aat																																																																															
EP300	2033	MSKCC	GRCh37	22	41547924	41547924	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	63	517	0	ENST00000263253.7:c.2905G>C	p.Glu969Gln	p.E969Q	ENST00000263253	NM_001429.3	969	Gag/Cag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278148	41278148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	91	534	0	ENST00000349496.5:c.2024C>T	p.Ser675Leu	p.S675L	ENST00000349496	NM_001904.3	675	tCa/tTa																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	18	323	0	ENST00000257430.4:c.4057G>C	p.Glu1353Gln	p.E1353Q	ENST00000257430	NM_000038.5	1353	Gaa/Caa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	71	374	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	101	453	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	103	567	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
MSH6	2956	MSKCC	GRCh37	2	48032767	48032768	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	73	265	0	ENST00000234420.5:c.3573dup	p.Val1192CysfsTer2	p.V1192Cfs*2	ENST00000234420	NM_000179.2	1189	-/T																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	78	320	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	81	469	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	120	409	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105938	27105938	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	130	568	0	ENST00000324856.7:c.5549A>G	p.Asp1850Gly	p.D1850G	ENST00000324856	NM_006015.4	1850	gAc/gGc																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	78	311	0	ENST00000257430.4:c.4473dupT	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																															
RARA	5914	MSKCC	GRCh37	17	38512377	38512377	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	84	479	0	ENST00000254066.5:c.1293delG	p.Arg432GlyfsTer211	p.R432Gfs*211	ENST00000254066	NM_000964.3	430	Ggg/gg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200073	128200073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	228	679	1	ENST00000341105.2:c.1232C>T	p.Ala411Val	p.A411V	ENST00000341105	NM_032638.4	411	gCg/gTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970914	79970915	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	194	452	10	ENST00000265081.6:c.1148dupA	p.Asn385GlnfsTer19	p.N385Qfs*19	ENST00000265081	NM_002439.4	380	-/A																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098540	11098540	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	192	564	0	ENST00000344626.4:c.1062delC	p.Ile355SerfsTer56	p.I355Sfs*56	ENST00000344626	NM_003072.3	353	aCc/ac																																																																															
FLT4	2324	MSKCC	GRCh37	5	180035975	180035975	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138599624		P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	96	619	3	ENST00000261937.6:c.3886G>A	p.Gly1296Ser	p.G1296S	ENST00000261937	NM_182925.4	1296	Ggc/Agc																																																																															
SETD8	387893	MSKCC	GRCh37	12	123874011	123874016	+	inframe_deletion	In_Frame_Del	DEL	GGCGGC	GGCGGC	-			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	14	50	0	ENST00000330479.4:c.59_64del	p.Ala20_Ala21del	p.A20_A21del	ENST00000330479	NM_020382.3	14	gaGGCGGCg/gag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260447	16260447	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	136	483	0	ENST00000375759.3:c.7715del	p.Pro2572ArgfsTer11	p.P2572Rfs*11	ENST00000375759	NM_015001.2	2571	gCc/gc																																																																															
CDK4	1019	MSKCC	GRCh37	12	58143021	58143021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	194	726	2	ENST00000257904.6:c.763C>T	p.Arg255Cys	p.R255C	ENST00000257904	NM_000075.3	255	Cgc/Tgc																																																																															
ABL1	25	MSKCC	GRCh37	9	133738156	133738156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	34	465	1	ENST00000318560.5:c.556G>A	p.Val186Ile	p.V186I	ENST00000318560	NM_005157.4	186	Gtc/Atc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21639508	21639508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138278747		P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	64	208	0	ENST00000421138.2:c.406G>A	p.Val136Ile	p.V136I	ENST00000421138		136	Gtc/Atc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420598	49420598	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	198	741	0	ENST00000301067.7:c.15151A>G	p.Asn5051Asp	p.N5051D	ENST00000301067	NM_003482.3	5051	Aac/Gac																																																																															
POLE	5426	MSKCC	GRCh37	12	133233794	133233794	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	50	563	0	ENST00000320574.5:c.3510del	p.Lys1170AsnfsTer49	p.K1170Nfs*49	ENST00000320574	NM_006231.2	1170	aaA/aa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953950	32953950	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	86	341	0	ENST00000380152.3:c.9017A>G	p.Tyr3006Cys	p.Y3006C	ENST00000380152		3006	tAc/tGc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986709	36986709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	15	34	0	ENST00000354822.5:c.980C>T	p.Ala327Val	p.A327V	ENST00000354822	NM_001079668.2	327	gCg/gTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658880	3658880	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149117119		P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	146	523	1	ENST00000294008.3:c.86G>A	p.Arg29His	p.R29H	ENST00000294008	NM_032444.2	29	cGc/cAc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56857718	56857718	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	40	453	0	ENST00000308159.5:c.754A>G	p.Met252Val	p.M252V	ENST00000308159	NM_014669.4	252	Atg/Gtg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40468878	40468879	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	55	415	1	ENST00000264657.5:c.2185dupC	p.Arg729ProfsTer12	p.R729Pfs*12	ENST00000264657	NM_139276.2	729	cgc/cCgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222759	5222759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	195	639	1	ENST00000357368.4:c.3044G>A	p.Arg1015His	p.R1015H	ENST00000357368	NM_002850.3	1015	cGc/cAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41574884	41574884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	51	616	1	ENST00000263253.7:c.7169C>T	p.Ala2390Val	p.A2390V	ENST00000263253	NM_001429.3	2390	gCc/gTc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280754	41280755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	143	515	0	ENST00000349496.5:c.2271dup	p.His758AlafsTer13	p.H758Afs*13	ENST00000349496	NM_001904.3	756	ctg/ctGg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141559291	141559291	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	49	734	0	ENST00000220592.5:c.1510A>G	p.Met504Val	p.M504V	ENST00000220592	NM_012154.3	504	Atg/Gtg																																																																															
ABL1	25	MSKCC	GRCh37	9	133710882	133710882	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	53	341	0	ENST00000318560.5:c.49C>A	p.Leu17Met	p.L17M	ENST00000318560	NM_005157.4	17	Ctg/Atg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63409962	63409962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	42	575	0	ENST00000330258.3:c.3205C>A	p.Pro1069Thr	p.P1069T	ENST00000330258	NM_152424.3	1069	Ccc/Acc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0049488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	996	414	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
RB1	5925	MSKCC	GRCh37	13	48916759	48916759	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	170	395	3	ENST00000267163.4:c.289G>T	p.Glu97Ter	p.E97*	ENST00000267163	NM_000321.2	97	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0049488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	465	656	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518000	8518000	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	222	383	0	ENST00000356435.5:c.1391A>G	p.Asn464Ser	p.N464S	ENST00000356435		464	aAc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0049490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	632	522	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0049490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	294	272	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5260818	5260818	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0049490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	241	575	0	ENST00000357368.4:c.593G>C	p.Arg198Pro	p.R198P	ENST00000357368	NM_002850.3	198	cGa/cCa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411291	63411291	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	603	306	1	ENST00000330258.3:c.1876C>T	p.Arg626Ter	p.R626*	ENST00000330258	NM_152424.3	626	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56480350	56480350	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147905731		P-0049490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	206	463	0	ENST00000267101.3:c.457G>A	p.Asp153Asn	p.D153N	ENST00000267101	NM_001982.3	153	Gat/Aat																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245512	153245512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	664	311	0	ENST00000281708.4:c.1679A>G	p.Asp560Gly	p.D560G	ENST00000281708	NM_033632.3	560	gAt/gGt																																																																															
SETD8	387893	MSKCC	GRCh37	12	123874022	123874022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	21	52	0	ENST00000330479.4:c.53C>T	p.Ala18Val	p.A18V	ENST00000330479	NM_020382.3	18	gCg/gTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350815	15350815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	73	514	0	ENST00000263377.2:c.3188C>T	p.Pro1063Leu	p.P1063L	ENST00000263377	NM_058243.2	1063	cCc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049501-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			436	19	439	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0049501-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			652	47	751	0	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
BTK	695	MSKCC	GRCh37	X	100614317	100614317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049501-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			549	32	586	0	ENST00000308731.7:c.858G>T	p.Met286Ile	p.M286I	ENST00000308731	NM_000061.2	286	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	637	620	0	ENST00000269305.4:c.542G>C	p.Arg181Pro	p.R181P	ENST00000269305	NM_001126112.2	181	cGc/cCc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87317081	87317081	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201490630		P-0049510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	206	399	0	ENST00000277120.3:c.220G>A	p.Ala74Thr	p.A74T	ENST00000277120		74	Gca/Aca																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62325788	62325788	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs116053476		P-0049510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	634	640	0	ENST00000508582.2:c.3128A>G	p.Gln1043Arg	p.Q1043R	ENST00000508582		1043	cAa/cGa																																																																															
PGR	5241	MSKCC	GRCh37	11	100998957	100998957	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	279	604	0	ENST00000325455.5:c.845T>G	p.Leu282Arg	p.L282R	ENST00000325455	NM_001202474.3	282	cTg/cGg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906973	32906973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	86	386	0	ENST00000380152.3:c.1358C>T	p.Pro453Leu	p.P453L	ENST00000380152		453	cCa/cTa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251007	99251007	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	197	547	0	ENST00000268035.6:c.311C>G	p.Thr104Arg	p.T104R	ENST00000268035	NM_000875.3	104	aCg/aGg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566840	212566840	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	53	276	0	ENST00000342788.4:c.1341C>G	p.Phe447Leu	p.F447L	ENST00000342788	NM_005235.2	447	ttC/ttG																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956820	68956820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	90	481	0	ENST00000288368.4:c.938G>A	p.Gly313Asp	p.G313D	ENST00000288368	NM_024870.2	313	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0049520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	35	538	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	276	626	2	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112175068	112175069	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0049521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	62	203	0	ENST00000257430.4:c.3778_3779del	p.Gln1260AspfsTer15	p.Q1260Dfs*15	ENST00000257430	NM_000038.5	1259	atACag/atag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118371775	118371775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	155	285	0	ENST00000534358.1:c.6232C>T	p.Arg2078Cys	p.R2078C	ENST00000534358	NM_005933.3	2078	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100181	27100182	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			P-0049521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	92	406	0	ENST00000324856.7:c.3999_4001dupGCA	p.Gln1334dup	p.Q1334dup	ENST00000324856	NM_006015.4	1334	ccg/ccGCAg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285554	38285554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	377	436	3	ENST00000425967.3:c.599C>T	p.Pro200Leu	p.P200L	ENST00000425967	NM_001174067.1	200	cCg/cTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448270	56448270	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0049521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	224	501	0	ENST00000407977.2:c.375+2T>G		p.X125_splice	ENST00000407977		125																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48573512	48573520	+	inframe_deletion	In_Frame_Del	DEL	TGAAACATT	TGAAACATT	-			P-0049521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	75	259	0	ENST00000342988.3:c.98_106del	p.Glu33_Phe35del	p.E33_F35del	ENST00000342988	NM_005359.5	32	agTGAAACATTt/agt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	195	375	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0049553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	207	746	1	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998985	11998985	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	66	271	0	ENST00000353533.5:c.487C>T	p.Gln163Ter	p.Q163*	ENST00000353533	NM_003010.3	163	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	15	321	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603041	48603041	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	27	259	0	ENST00000342988.3:c.1342C>T	p.Gln448Ter	p.Q448*	ENST00000342988	NM_005359.5	448	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	36	566	0	ENST00000269305.4:c.641del	p.His214LeufsTer33	p.H214Lfs*33	ENST00000269305	NM_001126112.2	214	cAt/ct																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273231	18273231	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1260910794		P-0049557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	39	517	1	ENST00000222254.8:c.1024G>A	p.Glu342Lys	p.E342K	ENST00000222254	NM_005027.3	342	Gag/Aag																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652353	48652353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	16	426	0	ENST00000376670.3:c.1024G>A	p.Gly342Ser	p.G342S	ENST00000376670	NM_002049.3	342	Ggt/Agt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424685	49424686	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0049557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	36	575	0	ENST00000301067.7:c.13661_13662del	p.Gln4554ProfsTer20	p.Q4554Pfs*20	ENST00000301067	NM_003482.3	4554	cAG/c																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125476	47125476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	26	357	0	ENST00000409792.3:c.5794C>T	p.Gln1932Ter	p.Q1932*	ENST00000409792	NM_014159.6	1932	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0049558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	152	409	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0049558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	138	721	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349957	15349957	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	103	731	0	ENST00000263377.2:c.3695G>C	p.Arg1232Pro	p.R1232P	ENST00000263377	NM_058243.2	1232	cGg/cCg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0049559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	526	557	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	672	552	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551603	150551603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	127	525	2	ENST00000369026.2:c.404G>A	p.Gly135Glu	p.G135E	ENST00000369026	NM_021960.4	135	gGg/gAg																																																																															
RB1	5925	MSKCC	GRCh37	13	48955482	48955482	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	398	310	0	ENST00000267163.4:c.1600del	p.Ser534ValfsTer9	p.S534Vfs*9	ENST00000267163	NM_000321.2	533	gAa/ga																																																																															
ATR	545	MSKCC	GRCh37	3	142222219	142222219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	612	301	1	ENST00000350721.4:c.5273G>A	p.Gly1758Glu	p.G1758E	ENST00000350721	NM_001184.3	1758	gGa/gAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55214320	55214320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	165	551	1	ENST00000275493.2:c.446G>T	p.Arg149Leu	p.R149L	ENST00000275493	NM_005228.3	149	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037105-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			756	258	771	0	ENST00000269305.4:c.587G>C	p.Arg196Pro	p.R196P	ENST00000269305	NM_001126112.2	196	cGa/cCa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979267	93979267	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037105-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			380	31	357	0	ENST00000369303.4:c.1561G>T	p.Ala521Ser	p.A521S	ENST00000369303	NM_004440.3	521	Gct/Tct																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120592	94120592	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037105-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			501	166	401	0	ENST00000369303.4:c.459A>T	p.Glu153Asp	p.E153D	ENST00000369303	NM_004440.3	153	gaA/gaT																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62321780	62321780	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037105-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			1162	101	491	0	ENST00000508582.2:c.2471A>G	p.Lys824Arg	p.K824R	ENST00000508582		824	aAg/aGg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53224552	53224552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037105-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			571	122	399	0	ENST00000375401.3:c.3161T>C	p.Leu1054Pro	p.L1054P	ENST00000375401	NM_004187.3	1054	cTa/cCa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692794	89692794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047475-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			37	20	266	0	ENST00000371953.3:c.278A>G	p.His93Arg	p.H93R	ENST00000371953	NM_000314.4	93	cAt/cGt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266112	41266112	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047475-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			66	18	247	0	ENST00000349496.5:c.109T>G	p.Ser37Ala	p.S37A	ENST00000349496	NM_001904.3	37	Tct/Gct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097627	27097627	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047475-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			78	31	359	0	ENST00000324856.7:c.3216A>C	p.Lys1072Asn	p.K1072N	ENST00000324856	NM_006015.4	1072	aaA/aaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	29	261	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDH1	999	MSKCC	GRCh37	16	68849663	68849663	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	37	363	0	ENST00000261769.5:c.1565+1G>A		p.X522_splice	ENST00000261769	NM_004360.3	522																																																																																
TP53	7157	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	48	491	0	ENST00000269305.4:c.773A>G	p.Glu258Gly	p.E258G	ENST00000269305	NM_001126112.2	258	gAa/gGa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061517	38061517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	38	405	0	ENST00000250448.2:c.472G>A	p.Asp158Asn	p.D158N	ENST00000250448	NM_004496.3	158	Gac/Aac																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981798	70981798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	48	729	0	ENST00000276594.2:c.298C>T	p.Pro100Ser	p.P100S	ENST00000276594	NM_024504.3	100	Ccg/Tcg																																																																															
ATRX	546	MSKCC	GRCh37	X	76888769	76888769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	36	365	0	ENST00000373344.5:c.5060G>A	p.Arg1687Lys	p.R1687K	ENST00000373344	NM_000489.3	1687	aGa/aAa																																																																															
CDC42	998	MSKCC	GRCh37	1	22405036	22405036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	22	95	0	ENST00000344548.3:c.65C>T	p.Ser22Phe	p.S22F	ENST00000344548	NM_001039802.1	22	tCc/tTc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120471773	120471773	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	65	364	0	ENST00000256646.2:c.3718C>T	p.Gln1240Ter	p.Q1240*	ENST00000256646	NM_024408.3	1240	Cag/Tag																																																																															
PARP1	142	MSKCC	GRCh37	1	226568832	226568832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	57	515	0	ENST00000366794.5:c.1237G>A	p.Glu413Lys	p.E413K	ENST00000366794	NM_001618.3	413	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624302	89624302	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	50	373	0	ENST00000371953.3:c.76A>C	p.Thr26Pro	p.T26P	ENST00000371953	NM_000314.4	26	Acc/Ccc																																																																															
MGA	23269	MSKCC	GRCh37	15	42046677	42046677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	45	320	0	ENST00000219905.7:c.7051G>C	p.Asp2351His	p.D2351H	ENST00000219905	NM_001164273.1	2351	Gac/Cac																																																																															
MGA	23269	MSKCC	GRCh37	15	42046697	42046697	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	45	341	0	ENST00000219905.7:c.7071G>C	p.Glu2357Asp	p.E2357D	ENST00000219905	NM_001164273.1	2357	gaG/gaC																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350303	89350303	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	39	606	1	ENST00000301030.4:c.2647G>T	p.Glu883Ter	p.E883*	ENST00000301030	NM_001256183.1	883	Gag/Tag																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169991102	169991102	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	27	323	0	ENST00000295797.4:c.620C>A	p.Ser207Tyr	p.S207Y	ENST00000295797	NM_002740.5	207	tCc/tAc																																																																															
TP63	8626	MSKCC	GRCh37	3	189612277	189612277	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	42	274	1	ENST00000264731.3:c.2029G>C	p.Glu677Gln	p.E677Q	ENST00000264731	NM_003722.4	677	Gag/Cag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178452	56178452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	27	236	0	ENST00000399503.3:c.3425C>T	p.Ser1142Leu	p.S1142L	ENST00000399503	NM_005921.1	1142	tCa/tTa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184158	56184158	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	19	248	0	ENST00000399503.3:c.4363T>A	p.Ser1455Thr	p.S1455T	ENST00000399503	NM_005921.1	1455	Tcc/Acc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117715857	117715857	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	42	238	0	ENST00000368508.3:c.901C>G	p.Leu301Val	p.L301V	ENST00000368508	NM_002944.2	301	Cta/Gta																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739913	41739913	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	47	272	0	ENST00000242208.4:c.60T>G	p.Ser20Arg	p.S20R	ENST00000242208	NM_002192.2	20	agT/agG																																																																															
EZH2	2146	MSKCC	GRCh37	7	148512011	148512011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	29	242	0	ENST00000320356.2:c.1667C>T	p.Ser556Leu	p.S556L	ENST00000320356	NM_004456.4	556	tCa/tTa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39911388	39911388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	39	398	0	ENST00000378444.4:c.5242G>A	p.Asp1748Asn	p.D1748N	ENST00000378444	NM_001123385.1	1748	Gat/Aat																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0049420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	154	574	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061261	38061261	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	344	557	0	ENST00000250448.2:c.728A>G	p.Tyr243Cys	p.Y243C	ENST00000250448	NM_004496.3	243	tAc/tGc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120820	115120821	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	232	489	0	ENST00000257566.3:c.185dup	p.Pro63AlafsTer48	p.P63Afs*48	ENST00000257566	NM_016569.3	62	aag/aaAg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061238	38061238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	137	503	0	ENST00000250448.2:c.751G>T	p.Gly251Cys	p.G251C	ENST00000250448	NM_004496.3	251	Ggc/Tgc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291073	10291073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	125	489	0	ENST00000340748.4:c.398C>T	p.Ser133Phe	p.S133F	ENST00000340748		133	tCc/tTc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148516768	148516768	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	31	151	0	ENST00000320356.2:c.919A>T	p.Thr307Ser	p.T307S	ENST00000320356	NM_004456.4	307	Aca/Tca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087893	27087893	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	500	545	0	ENST00000324856.7:c.2181del	p.Pro728HisfsTer14	p.P728Hfs*14	ENST00000324856	NM_006015.4	727	cGg/cg																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518419	69518419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	112	143	1	ENST00000294312.3:c.226G>A	p.Ala76Thr	p.A76T	ENST00000294312	NM_005117.2	76	Gcg/Acg																																																																															
NF1	4763	MSKCC	GRCh37	17	29486062	29486062	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	192	231	0	ENST00000358273.4:c.239A>T	p.Tyr80Phe	p.Y80F	ENST00000358273	NM_001042492.2	80	tAt/tTt																																																																															
EZH1	2145	MSKCC	GRCh37	17	40858190	40858190	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	551	647	0	ENST00000428826.2:c.1674C>A	p.Phe558Leu	p.F558L	ENST00000428826		558	ttC/ttA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573597	48573597	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	110	258	1	ENST00000342988.3:c.181A>G	p.Ile61Val	p.I61V	ENST00000342988	NM_005359.5	61	Ata/Gta																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600380	10600380	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	525	842	1	ENST00000171111.5:c.1475C>G	p.Pro492Arg	p.P492R	ENST00000171111	NM_203500.1	492	cCa/cGa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132532	11132532	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	517	930	1	ENST00000344626.4:c.2748C>A	p.Asn916Lys	p.N916K	ENST00000344626	NM_003072.3	916	aaC/aaA																																																																															
CIC	23152	MSKCC	GRCh37	19	42795142	42795142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	562	992	1	ENST00000575354.2:c.2222C>T	p.Ala741Val	p.A741V	ENST00000575354	NM_015125.3	741	gCc/gTc																																																																															
CASP8	841	MSKCC	GRCh37	2	202131293	202131293	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	138	396	0	ENST00000358485.4:c.261C>G	p.Asp87Glu	p.D87E	ENST00000358485	NM_001080125.1	87	gaC/gaG																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55136840	55136840	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	233	326	0	ENST00000257290.5:c.1162G>T	p.Asp388Tyr	p.D388Y	ENST00000257290	NM_006206.4	388	Gac/Tac																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020749	26020749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	124	282	0	ENST00000357647.3:c.32C>T	p.Ser11Phe	p.S11F	ENST00000357647	NM_003529.2	11	tCt/tTt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	140	354	0	ENST00000347630.2:c.397T>C	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	Ttc/Ctc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876425	35876425	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	212	482	0	ENST00000303115.3:c.1217T>G	p.Leu406Arg	p.L406R	ENST00000303115	NM_002185.3	406	cTt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112176740	112176740	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	43	193	1	ENST00000257430.4:c.5453del	p.Asn1818IlefsTer45	p.N1818Ifs*45	ENST00000257430	NM_000038.5	1817	Aaa/aa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44879923	44879923	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0049429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	113	205	0	ENST00000377967.4:c.512T>G	p.Leu171Ter	p.L171*	ENST00000377967	NM_021140.2	171	tTa/tGa																																																																															
NF1	4763	MSKCC	GRCh37	17	29687586	29687586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	32	336	0	ENST00000358273.4:c.8242G>A	p.Glu2748Lys	p.E2748K	ENST00000358273	NM_001042492.2	2748	Gaa/Aaa																																																																															
MAX	4149	MSKCC	GRCh37	14	65569055	65569055	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0049432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	33	377	0	ENST00000358664.4:c.3G>A	p.Met1?	p.M1?	ENST00000358664	NM_002382.4	1	atG/atA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624274	89624274	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0049432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	23	315	0	ENST00000371953.3:c.48T>G	p.Tyr16Ter	p.Y16*	ENST00000371953	NM_000314.4	16	taT/taG																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67593264	67593264	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0049432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	29	172	0	ENST00000274335.5:c.2010T>A	p.Cys670Ter	p.C670*	ENST00000274335		670	tgT/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	125	341	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	143	463	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	128	380	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	121	159	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925316	114925317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769592153		P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	158	385	9	ENST00000543371.1:c.1403dup	p.Cys469ValfsTer8	p.C469Vfs*8	ENST00000543371	NM_001198531.1	465	aga/agAa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243858992	243858992	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	32	293	0	ENST00000263826.5:c.73A>G	p.Arg25Gly	p.R25G	ENST00000263826	NM_005465.4	25	Aga/Gga																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103504590	103504590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	133	278	0	ENST00000355739.4:c.211C>T	p.Arg71Cys	p.R71C	ENST00000355739	NM_000123.3	71	Cgt/Tgt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39584468	39584468	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1253032956		P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	86	292	0	ENST00000262039.4:c.1133G>A	p.Arg378His	p.R378H	ENST00000262039	NM_002647.2	378	cGt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332919	153332919	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs781123562		P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	93	261	0	ENST00000281708.4:c.37C>T	p.Arg13Ter	p.R13*	ENST00000281708	NM_033632.3	13	Cga/Tga																																																																															
MPL	4352	MSKCC	GRCh37	1	43806114	43806115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	69	532	2	ENST00000372470.3:c.911dup	p.Gln305AlafsTer6	p.Q305Afs*6	ENST00000372470	NM_005373.2	304	cag/cAag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63845537	63845537	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	66	225	0	ENST00000279873.7:c.1276G>C	p.Glu426Gln	p.E426Q	ENST00000279873	NM_032199.2	426	Gag/Cag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136205	64136205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	203	887	2	ENST00000334205.4:c.1364C>T	p.Ala455Val	p.A455V	ENST00000334205	NM_003942.2	455	gCt/gTt																																																																															
PGR	5241	MSKCC	GRCh37	11	100912729	100912729	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	91	366	0	ENST00000325455.5:c.2593T>G	p.Ser865Ala	p.S865A	ENST00000325455	NM_001202474.3	865	Tcg/Gcg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195825	102195825	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	96	332	0	ENST00000263464.3:c.585C>A	p.Tyr195Ter	p.Y195*	ENST00000263464	NM_001165.4	195	taC/taA																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910860	32910860	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	40	301	0	ENST00000380152.3:c.2368G>C	p.Glu790Gln	p.E790Q	ENST00000380152		790	Gaa/Caa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609679	81609679	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	113	466	0	ENST00000298171.2:c.1277T>A	p.Leu426Gln	p.L426Q	ENST00000298171	NM_000369.2	426	cTg/cAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991880	72991880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	224	608	0	ENST00000268489.5:c.2165G>A	p.Gly722Asp	p.G722D	ENST00000268489	NM_006885.3	722	gGt/gAt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033436	48033440	+	frameshift_variant	Frame_Shift_Del	DEL	CTCAC	CTCAC	-			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	34	389	0	ENST00000234420.5:c.3740_3744del	p.Thr1247IlefsTer26	p.T1247Ifs*26	ENST00000234420	NM_000179.2	1247	aCTCAC/a																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022943	31022943	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	62	465	0	ENST00000375687.4:c.2428G>A	p.Asp810Asn	p.D810N	ENST00000375687	NM_015338.5	810	Gac/Aac																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799550	72799550	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	70	473	0	ENST00000325599.8:c.1619A>C	p.Glu540Ala	p.E540A	ENST00000325599	NM_018130.2	540	gAg/gCg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133465	55133465	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	125	312	0	ENST00000257290.5:c.769G>C	p.Gly257Arg	p.G257R	ENST00000257290	NM_006206.4	257	Ggc/Cgc																																																																															
NBN	4683	MSKCC	GRCh37	8	90995054	90995054	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	130	293	0	ENST00000265433.3:c.67G>C	p.Glu23Gln	p.E23Q	ENST00000265433	NM_002485.4	23	Gag/Cag																																																																															
MYC	4609	MSKCC	GRCh37	8	128748843	128748844	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	42	347	0	ENST00000377970.2:c.5dup	p.Asp2GlufsTer20	p.D2Efs*20	ENST00000377970	NM_002467.4	2	gat/gAat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21994182	21994182	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	105	753	0	ENST00000361570.3:c.272T>A	p.Leu91Gln	p.L91Q	ENST00000361570	NM_058195.3	91	cTg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0049434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	18	276	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484339	8484339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	30	264	0	ENST00000356435.5:c.3193G>T	p.Gly1065Cys	p.G1065C	ENST00000356435		1065	Ggc/Tgc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600471	10600471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	54	568	2	ENST00000171111.5:c.1384G>T	p.Gly462Trp	p.G462W	ENST00000171111	NM_203500.1	462	Ggg/Tgg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220433	1220433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	73	873	1	ENST00000326873.7:c.526G>T	p.Asp176Tyr	p.D176Y	ENST00000326873	NM_000455.4	176	Gac/Tac																																																																															
RB1	5925	MSKCC	GRCh37	13	48878185	48878185	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	50	210	0	ENST00000267163.4:c.137G>A	p.Arg46Lys	p.R46K	ENST00000267163	NM_000321.2	46	aGg/aAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11136147	11136147	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	52	652	0	ENST00000344626.4:c.3131A>G	p.Lys1044Arg	p.K1044R	ENST00000344626	NM_003072.3	1044	aAg/aGg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349964	15349964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	63	835	0	ENST00000263377.2:c.3688G>T	p.Ala1230Ser	p.A1230S	ENST00000263377	NM_058243.2	1230	Gcc/Tcc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47129605	47129605	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0049434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	26	258	0	ENST00000409792.3:c.5275C>T	p.Gln1759Ter	p.Q1759*	ENST00000409792	NM_014159.6	1759	Cag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0049498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	45	323	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0049498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	39	412	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577594	7577594	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0049498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	101	508	0	ENST00000269305.4:c.687T>A	p.Cys229Ter	p.C229*	ENST00000269305	NM_001126112.2	229	tgT/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112175706	112175706	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	14	355	0	ENST00000257430.4:c.4415del	p.Val1472GlufsTer35	p.V1472Efs*35	ENST00000257430	NM_000038.5	1472	gTa/ga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119751	70119752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0049498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	172	450	0	ENST00000245479.2:c.754_755dup	p.Lys253Ter	p.K253*	ENST00000245479	NM_000346.3	251	-/CT																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851273	156851273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	111	698	0	ENST00000524377.1:c.2230C>T	p.Arg744Cys	p.R744C	ENST00000524377	NM_002529.3	744	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112174481	112174481	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	16	280	0	ENST00000257430.4:c.3190G>T	p.Glu1064Ter	p.E1064*	ENST00000257430	NM_000038.5	1064	Gag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0049500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	172	421	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346309	89346309	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	153	468	0	ENST00000301030.4:c.6641A>G	p.Asp2214Gly	p.D2214G	ENST00000301030	NM_001256183.1	2214	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0049538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	136	726	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112111408	112111411	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0049538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	127	258	0	ENST00000257430.4:c.509_512del	p.Asp170ValfsTer4	p.D170Vfs*4	ENST00000257430	NM_000038.5	169	ATAGat/at																																																																															
PARK2	5071	MSKCC	GRCh37	6	161807896	161807896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	19	354	0	ENST00000366898.1:c.1097G>A	p.Arg366Gln	p.R366Q	ENST00000366898	NM_004562.2	366	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0049538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	22	236	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
KDR	3791	MSKCC	GRCh37	4	55979623	55979623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	108	428	0	ENST00000263923.4:c.824G>A	p.Arg275Gln	p.R275Q	ENST00000263923	NM_002253.2	275	cGa/cAa																																																																															
SUFU	51684	MSKCC	GRCh37	10	104263979	104263979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	35	234	1	ENST00000369902.3:c.70C>T	p.Pro24Ser	p.P24S	ENST00000369902	NM_016169.3	24	Ccg/Tcg																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62326461	62326461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	63	946	1	ENST00000508582.2:c.3458C>T	p.Ser1153Leu	p.S1153L	ENST00000508582		1153	tCa/tTa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324051	31324051	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	83	487	2	ENST00000412585.2:c.512G>A	p.Trp171Ter	p.W171*	ENST00000412585	NM_005514.6	171	tGg/tAg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148523554	148523554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	37	237	0	ENST00000320356.2:c.899G>A	p.Cys300Tyr	p.C300Y	ENST00000320356	NM_004456.4	300	tGc/tAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0049147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	444	732	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118704	115118706	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0049147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	135	391	0	ENST00000257566.3:c.635_637del	p.Asn212del	p.N212del	ENST00000257566	NM_016569.3	212	aACAtt/att																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056181	27056181	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	73	548	0	ENST00000324856.7:c.1177C>T	p.Gln393Ter	p.Q393*	ENST00000324856	NM_006015.4	393	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	124	386	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0049353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	117	514	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	14	414	0	ENST00000342988.3:c.1081C>A	p.Arg361Ser	p.R361S	ENST00000342988	NM_005359.5	361	Cgc/Agc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	104	448	0	ENST00000304494.5:c.143C>A	p.Pro48Gln	p.P48Q	ENST00000304494	NM_000077.4	48	cCg/cAg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40375490	40375490	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	31	616	0	ENST00000293328.3:c.460G>T	p.Val154Phe	p.V154F	ENST00000293328	NM_012448.3	154	Gtc/Ttc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971185	21971207	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CGGGCGCTGCCCATCATCATGAC	CGGGCGCTGCCCATCATCATGAC	-			P-0049353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	76	519	0	ENST00000304494.5:c.151_173del	p.Val51SerfsTer61	p.V51Sfs*61	ENST00000304494	NM_000077.4	51	GTCATGATGATGGGCAGCGCCCGa/a																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128268598	128268598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	108	566	2	ENST00000265960.3:c.1057C>T	p.Arg353Cys	p.R353C	ENST00000265960	NM_001006617.1	353	Cgc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202872	16202872	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	150	453	0	ENST00000375759.3:c.580T>C	p.Phe194Leu	p.F194L	ENST00000375759	NM_015001.2	194	Ttt/Ctt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650948	37650948	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0049355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	103	276	1	ENST00000447079.4:c.2419+1G>C		p.X807_splice	ENST00000447079	NM_015083.1	807																																																																																
WHSC1	7468	MSKCC	GRCh37	4	1902793	1902793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	148	552	4	ENST00000382891.5:c.412C>T	p.Leu138Phe	p.L138F	ENST00000382891	NM_133335.3	138	Ctc/Ttc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900122	151900122	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	125	244	2	ENST00000262189.6:c.3989T>C	p.Leu1330Ser	p.L1330S	ENST00000262189	NM_170606.2	1330	tTa/tCa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133178	38133178	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	237	399	3	ENST00000317025.8:c.4295G>T	p.Gly1432Val	p.G1432V	ENST00000317025	NM_023034.1	1432	gGa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0049368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	183	631	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
BRAF	673	MSKCC	GRCh37	7	140477837	140477851	+	inframe_deletion	In_Frame_Del	DEL	TAGGTGCTGTCACAT	TAGGTGCTGTCACAT	-			P-0049368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	94	442	0	ENST00000288602.6:c.1457_1471del	p.Asn486_Pro490del	p.N486_P490del	ENST00000288602	NM_004333.4	486	aATGTGACAGCACCTAca/aca																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459852	149459852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	58	784	1	ENST00000286301.3:c.355G>A	p.Glu119Lys	p.E119K	ENST00000286301	NM_005211.3	119	Gag/Aag																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130450	29130464	+	inframe_deletion	In_Frame_Del	DEL	TCCTCAGGTTCTTGG	TCCTCAGGTTCTTGG	-			P-0049368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	62	604	0	ENST00000328354.6:c.246_260del	p.Asp82_Glu86del	p.D82_E86del	ENST00000328354	NM_007194.3	82	gaCCAAGAACCTGAGGAg/gag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115974	8115975	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0049369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	234	316	0	ENST00000346208.3:c.1321_1322del	p.Ala441HisfsTer65	p.A441Hfs*65	ENST00000346208		440	acCGcc/accc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250861	10250861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	182	590	0	ENST00000340748.4:c.3619C>T	p.Arg1207Cys	p.R1207C	ENST00000340748		1207	Cgc/Tgc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62293939	62293939	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1329	328	668	0	ENST00000508582.2:c.508A>C	p.Ile170Leu	p.I170L	ENST00000508582		170	Atc/Ctc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275114	41275114	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	93	309	0	ENST00000349496.5:c.1280T>C	p.Leu427Pro	p.L427P	ENST00000349496	NM_001904.3	427	cTc/cCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	44	413	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0049370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	39	578	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472523	88472523	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	74	568	0	ENST00000360948.2:c.2032C>T	p.Arg678Ter	p.R678*	ENST00000360948	NM_001012338.2	678	Cga/Tga																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45873491	45873491	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0049370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	36	508	0	ENST00000391945.4:c.6-1G>T		p.X2_splice	ENST00000391945	NM_000400.3	2																																																																																
GNAS	2778	MSKCC	GRCh37	20	57466908	57466910	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-			P-0049370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	14	191	0	ENST00000371085.3:c.136_138del	p.Leu46del	p.L46del	ENST00000371085	NM_000516.4	43	CTG/-																																																																															
TSC2	7249	MSKCC	GRCh37	16	2126085	2126085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	60	582	0	ENST00000219476.3:c.2656G>T	p.Val886Leu	p.V886L	ENST00000219476	NM_000548.3	886	Gtg/Ttg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217867	2217867	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	46	690	1	ENST00000398665.3:c.2641G>T	p.Val881Phe	p.V881F	ENST00000398665	NM_032482.2	881	Gtc/Ttc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239961	98239961	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	42	429	0	ENST00000331920.6:c.1371G>T	p.Met457Ile	p.M457I	ENST00000331920	NM_000264.3	457	atG/atT																																																																															
TERT	7015	MSKCC	GRCh37	5	1279534	1279534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1386	75	685	0	ENST00000310581.5:c.2002G>A	p.Glu668Lys	p.E668K	ENST00000310581	NM_198253.2	668	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	72	196	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0049372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	218	543	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31504699	31504699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	181	390	1	ENST00000344624.3:c.1631G>A	p.Arg544His	p.R544H	ENST00000344624		544	cGc/cAc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95590777	95590778	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0049375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	154	275	0	ENST00000343455.3:c.1131_1132del	p.Ile378GlnfsTer10	p.I378Qfs*10	ENST00000343455	NM_177438.2	377	gtAAtc/gttc																																																																															
NF2	4771	MSKCC	GRCh37	22	30069458	30069458	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	149	495	0	ENST00000338641.4:c.1323del	p.Glu442ArgfsTer13	p.E442Rfs*13	ENST00000338641	NM_000268.3	441	gcT/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0049381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	303	533	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	339	249	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573587	48573587	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	66	98	0	ENST00000342988.3:c.171A>C	p.Leu57Phe	p.L57F	ENST00000342988	NM_005359.5	57	ttA/ttC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584562	48584566	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAG	GCCAG	-			P-0049381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	31	391	0	ENST00000342988.3:c.736_740del	p.Pro246ThrfsTer16	p.P246Tfs*16	ENST00000342988	NM_005359.5	245	caGCCAGga/caga																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910647	29910647	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1653	444	1297	1	ENST00000376809.5:c.187G>T	p.Asp63Tyr	p.D63Y	ENST00000376809	NM_002116.7	63	Gac/Tac																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	137	493	0	ENST00000397752.3:c.3028+1G>A		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9862850	9862850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	49	498	0	ENST00000330684.3:c.2453C>T	p.Ala818Val	p.A818V	ENST00000330684	NM_001134407.1	818	gCg/gTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0049382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	38	290	0				ENST00000310581	NM_198253.2																																																																																	
RPTOR	57521	MSKCC	GRCh37	17	78897289	78897289	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0049382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	50	533	0	ENST00000306801.3:c.2625-1G>C		p.X875_splice	ENST00000306801	NM_020761.2	875																																																																																
MSH3	4437	MSKCC	GRCh37	5	79950724	79950725	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCGCAGCGC			P-0049384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	15	91	1	ENST00000265081.6:c.181_189dup	p.Ala61_Pro63dup	p.A61_P63dup	ENST00000265081	NM_002439.4	61	gcc/gCCGCAGCGCcc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50816282	50816282	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	183	220	4	ENST00000398568.2:c.1726del	p.Met576TrpfsTer8	p.M576Wfs*8	ENST00000398568	NM_001042412.1	574	ccA/cc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0049387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	220	385	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259442	55259442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	196	332	0	ENST00000275493.2:c.2500G>T	p.Val834Leu	p.V834L	ENST00000275493	NM_005228.3	834	Gtg/Ttg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9783245	9783245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	41	433	1	ENST00000377346.4:c.2489G>A	p.Arg830His	p.R830H	ENST00000377346	NM_005026.3	830	cGt/cAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040923	47040923	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	70	588	0	ENST00000329236.7:c.1219G>T	p.Glu407Ter	p.E407*	ENST00000329236	NM_001204466.1	407	Gag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108192121	108192121	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	103	325	0	ENST00000278616.4:c.6547del	p.Glu2183LysfsTer52	p.E2183Kfs*52	ENST00000278616	NM_000051.3	2182	ctG/ct																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761237	59761237	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	68	329	0	ENST00000259008.2:c.3170A>T	p.Asn1057Ile	p.N1057I	ENST00000259008	NM_032043.2	1057	aAt/aTt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361201	66361201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	57	224	0	ENST00000273854.3:c.971C>A	p.Pro324His	p.P324H	ENST00000273854	NM_004439.5	324	cCt/cAt																																																																															
RHEB	6009	MSKCC	GRCh37	7	151188086	151188099	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TCAATGAGGATTTC	TCAATGAGGATTTC	-			P-0049387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	54	185	0	ENST00000262187.5:c.54_67del	p.Lys19AspfsTer5	p.K19Dfs*5	ENST00000262187	NM_005614.3	18	ggGAAATCCTCATTGAcg/ggcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0049404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	167	465	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0049404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	36	175	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245513	153245513	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	153	293	0	ENST00000281708.4:c.1678G>C	p.Asp560His	p.D560H	ENST00000281708	NM_033632.3	560	Gat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0049404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	138	281	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112173730	112173730	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	59	261	0	ENST00000257430.4:c.2442del	p.Phe814LeufsTer6	p.F814Lfs*6	ENST00000257430	NM_000038.5	813	aaT/aa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212056	5212056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	184	624	0	ENST00000357368.4:c.4975C>T	p.Arg1659Cys	p.R1659C	ENST00000357368	NM_002850.3	1659	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0049407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	380	569	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0049407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	175	301	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570332	87570332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	117	674	1	ENST00000277120.3:c.2072G>A	p.Arg691His	p.R691H	ENST00000277120		691	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	84	137	0	ENST00000257430.4:c.3910dup	p.Ile1304AsnfsTer11	p.I1304Nfs*11	ENST00000257430	NM_000038.5	1303	caa/cAaa																																																																															
APC	324	MSKCC	GRCh37	5	112173393	112173394	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	125	220	0	ENST00000257430.4:c.2107dup	p.Ala703GlyfsTer3	p.A703Gfs*3	ENST00000257430	NM_000038.5	701	atg/atGg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932591	39932591	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148886271		P-0049407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	465	338	0	ENST00000378444.4:c.2008C>T	p.Pro670Ser	p.P670S	ENST00000378444	NM_001123385.1	670	Ccc/Tcc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061232	38061234	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0049408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	174	563	0	ENST00000250448.2:c.755_757del	p.Asn252del	p.N252del	ENST00000250448	NM_004496.3	252	aACAtg/atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	16	344	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	36	484	0	ENST00000269305.4:c.713G>C	p.Cys238Ser	p.C238S	ENST00000269305	NM_001126112.2	238	tGt/tCt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2949769	2949769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	77	613	1	ENST00000396946.4:c.3175G>A	p.Gly1059Ser	p.G1059S	ENST00000396946	NM_032415.4	1059	Ggc/Agc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	110	621	1	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0048874-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			425	1488	475	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600393	10600393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048874-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			745	144	666	0	ENST00000171111.5:c.1462G>A	p.Glu488Lys	p.E488K	ENST00000171111	NM_203500.1	488	Gag/Aag																																																																															
TET2	54790	MSKCC	GRCh37	4	106157474	106157474	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048874-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	66	287	0	ENST00000380013.4:c.2375C>G	p.Ser792Ter	p.S792*	ENST00000380013	NM_001127208.2	792	tCa/tGa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817814	3817814	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200424021		P-0048874-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			786	139	565	1	ENST00000262367.5:c.3157C>T	p.Pro1053Ser	p.P1053S	ENST00000262367	NM_004380.2	1053	Cct/Tct																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829714	72829714	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048874-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	84	605	0	ENST00000268489.5:c.6867G>T	p.Trp2289Cys	p.W2289C	ENST00000268489	NM_006885.3	2289	tgG/tgT																																																																															
NBN	4683	MSKCC	GRCh37	8	90967571	90967571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048874-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			533	69	335	0	ENST00000265433.3:c.1337C>T	p.Ala446Val	p.A446V	ENST00000265433	NM_002485.4	446	gCt/gTt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0049388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	93	426	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0049388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	219	519	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244155	153244156	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	114	424	1	ENST00000281708.4:c.2001dup	p.Ser668GlufsTer26	p.S668Efs*26	ENST00000281708	NM_033632.3	667	-/G																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141035	55141035	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	98	307	0	ENST00000257290.5:c.1681G>C	p.Val561Leu	p.V561L	ENST00000257290	NM_006206.4	561	Gtc/Ctc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011128	12011128	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	102	230	0	ENST00000353533.5:c.535G>T	p.Glu179Ter	p.E179*	ENST00000353533	NM_003010.3	179	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175313	112175314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	98	221	0	ENST00000257430.4:c.4025dup	p.Leu1342PhefsTer12	p.L1342Ffs*12	ENST00000257430	NM_000038.5	1341	agt/agTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	51	314	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0049389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	55	202	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0049389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	38	227	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295801	212295801	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	60	349	0	ENST00000342788.4:c.2512C>T	p.Arg838Ter	p.R838*	ENST00000342788	NM_005235.2	838	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119808	70119808	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	227	557	0	ENST00000245479.2:c.811del	p.Arg271AlafsTer8	p.R271Afs*8	ENST00000245479	NM_000346.3	270	ttC/tt																																																																															
APC	324	MSKCC	GRCh37	5	112173801	112173801	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0049389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	58	232	0	ENST00000257430.4:c.2510C>G	p.Ser837Ter	p.S837*	ENST00000257430	NM_000038.5	837	tCa/tGa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604674	48604674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	78	312	1	ENST00000342988.3:c.1496G>A	p.Cys499Tyr	p.C499Y	ENST00000342988	NM_005359.5	499	tGc/tAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0049414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	426	476	3	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0049414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	372	762	2	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912580		P-0049414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	30	248	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112151251	112151252	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0049414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	96	309	0	ENST00000257430.4:c.896_897del	p.Ser299CysfsTer27	p.S299Cfs*27	ENST00000257430	NM_000038.5	298	caCTct/cact																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884875	134884875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	369	449	0	ENST00000398015.3:c.1651G>A	p.Val551Met	p.V551M	ENST00000398015	NM_004441.4	551	Gtg/Atg																																																																															
KDR	3791	MSKCC	GRCh37	4	55962508	55962512	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCTA	TTCTA	-			P-0049414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	132	339	0	ENST00000263923.4:c.2615-3_2616del		p.X872_splice	ENST00000263923	NM_002253.2	872																																																																																
APC	324	MSKCC	GRCh37	5	112164640	112164640	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	129	243	0	ENST00000257430.4:c.1715del	p.Leu572Ter	p.L572*	ENST00000257430	NM_000038.5	572	Ttg/tg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922891	39922891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	205	237	1	ENST00000378444.4:c.3817G>A	p.Glu1273Lys	p.E1273K	ENST00000378444	NM_001123385.1	1273	Gag/Aag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	67	616	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913558	32913559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1265028174		P-0049438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	64	461	0	ENST00000380152.3:c.5073dup	p.Trp1692MetfsTer3	p.W1692Mfs*3	ENST00000380152		1689	gca/gcAa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41268760	41268760	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	36	453	0	ENST00000349496.5:c.998A>T	p.Tyr333Phe	p.Y333F	ENST00000349496	NM_001904.3	333	tAc/tTc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40476846	40476846	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0049438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	28	509	1	ENST00000264657.5:c.1483A>T	p.Lys495Ter	p.K495*	ENST00000264657	NM_139276.2	495	Aag/Tag																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279961	18279961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	35	718	1	ENST00000222254.8:c.2044C>T	p.Pro682Ser	p.P682S	ENST00000222254	NM_005027.3	682	Ccc/Tcc																																																																															
VHL	7428	MSKCC	GRCh37	3	10191506	10191506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	243	536	1	ENST00000256474.2:c.499C>T	p.Arg167Trp	p.R167W	ENST00000256474	NM_000551.3	167	Cgg/Tgg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1962801	1962801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	140	533	1	ENST00000382891.5:c.3295G>A	p.Glu1099Lys	p.E1099K	ENST00000382891	NM_133335.3	1099	Gag/Aag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30133035	30133035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	246	476	0	ENST00000331968.5:c.566C>T	p.Ala189Val	p.A189V	ENST00000331968	NM_002742.2	189	gCa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0046175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			552	62	431	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
HIST1H3D	8351	MSKCC	GRCh37	6	26197306	26197306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			649	98	690	0	ENST00000356476.2:c.173C>T	p.Ser58Leu	p.S58L	ENST00000356476		58	tCg/tTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295181	1295181	+	upstream_gene_variant	5'Flank	SNP	G	G	C			P-0047191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	81	335	0				ENST00000310581	NM_198253.2																																																																																	
SMAD4	4089	MSKCC	GRCh37	18	48584552	48584552	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0047191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			321	264	593	0	ENST00000342988.3:c.725C>G	p.Ser242Ter	p.S242*	ENST00000342988	NM_005359.5	242	tCa/tGa																																																																															
MET	4233	MSKCC	GRCh37	7	116412022	116412022	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			323	1139	767	0	ENST00000397752.3:c.3007T>A	p.Tyr1003Asn	p.Y1003N	ENST00000397752	NM_000245.2	1003	Tac/Aac																																																																															
TSC1	7248	MSKCC	GRCh37	9	135804196	135804196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			564	269	645	1	ENST00000298552.3:c.64C>T	p.Arg22Trp	p.R22W	ENST00000298552	NM_001162426.1	22	Cgg/Tgg																																																																															
YAP1	10413	MSKCC	GRCh37	11	101985064	101985064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			754	2655	873	1	ENST00000282441.5:c.511G>A	p.Val171Ile	p.V171I	ENST00000282441	NM_001130145.2	171	Gta/Ata																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811697	102811697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			689	201	695	0	ENST00000307046.8:c.487G>A	p.Glu163Lys	p.E163K	ENST00000307046	NM_001111285.1	163	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577608	7577609	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0047191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			321	163	557	2	ENST00000269305.4:c.673-1_673delinsTT		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
CDK12	51755	MSKCC	GRCh37	17	37672024	37672024	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			563	65	549	0	ENST00000447079.4:c.2809C>G	p.Gln937Glu	p.Q937E	ENST00000447079	NM_015083.1	937	Caa/Gaa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47684640	47684640	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			668	49	605	0	ENST00000347630.2:c.809C>A	p.Ala270Asp	p.A270D	ENST00000347630	NM_001007230.1	270	gCt/gAt																																																																															
VHL	7428	MSKCC	GRCh37	3	10183559	10183559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1196	318	892	0	ENST00000256474.2:c.28G>C	p.Glu10Gln	p.E10Q	ENST00000256474	NM_000551.3	10	Gag/Cag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251937	153251955	+	frameshift_variant	Frame_Shift_Del	DEL	TGATGTATGCACTTTTCCA	TGATGTATGCACTTTTCCA	-			P-0047191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			269	89	547	0	ENST00000281708.4:c.1051_1069del	p.Trp351AspfsTer20	p.W351Dfs*20	ENST00000281708	NM_033632.3	351	TGGAAAAGTGCATACATCAga/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	83	332	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0047416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	218	521	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0047416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	25	259	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119765	70119766	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0047416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	151	409	0	ENST00000245479.2:c.770_771dupGC	p.Pro258AlafsTer22	p.P258Afs*22	ENST00000245479	NM_000346.3	256	ggg/ggGCg																																																																															
KDR	3791	MSKCC	GRCh37	4	55955593	55955593	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	52	376	1	ENST00000263923.4:c.3352C>T	p.Arg1118Ter	p.R1118*	ENST00000263923	NM_002253.2	1118	Cga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467877	66467877	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	10	300	0	ENST00000273854.3:c.392A>T	p.Lys131Ile	p.K131I	ENST00000273854	NM_004439.5	131	aAa/aTa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411944	63411948	+	frameshift_variant	Frame_Shift_Del	DEL	TATTC	TATTC	-			P-0047416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	123	604	0	ENST00000330258.3:c.1219_1223del	p.Glu407SerfsTer32	p.E407Sfs*32	ENST00000330258	NM_152424.3	407	GAATAt/t																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0048384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	12	321	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0048384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	78	898	1	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100117	157100119	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs1450867853		P-0048384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	12	76	0	ENST00000346085.5:c.1069_1071del	p.Gly357del	p.G357del	ENST00000346085	NM_020732.3	352	GGC/-																																																																															
APC	324	MSKCC	GRCh37	5	112111408	112111411	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0048384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	17	329	0	ENST00000257430.4:c.509_512del	p.Asp170ValfsTer4	p.D170Vfs*4	ENST00000257430	NM_000038.5	169	ATAGat/at																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524624	103524624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	12	423	2	ENST00000355739.4:c.2755C>T	p.Arg919Trp	p.R919W	ENST00000355739	NM_000123.3	919	Cgg/Tgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	41	616	0	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933619	39933619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	130	390	0	ENST00000378444.4:c.980G>A	p.Gly327Glu	p.G327E	ENST00000378444	NM_001123385.1	327	gGg/gAg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21626569	21626569	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199740132		P-0048384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	10	398	0	ENST00000421138.2:c.1363C>T	p.Arg455Cys	p.R455C	ENST00000421138		455	Cgt/Tgt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164393	47164393	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0048384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	13	349	0	ENST00000409792.3:c.1733T>G	p.Leu578Ter	p.L578*	ENST00000409792	NM_014159.6	578	tTa/tGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	19	291	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	8	292	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																															
CCND2	894	MSKCC	GRCh37	12	4383225	4383225	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	16	413	0	ENST00000261254.3:c.19G>C	p.Glu7Gln	p.E7Q	ENST00000261254	NM_001759.3	7	Gag/Cag																																																																															
PARP1	142	MSKCC	GRCh37	1	226567695	226567695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	21	527	0	ENST00000366794.5:c.1471G>A	p.Glu491Lys	p.E491K	ENST00000366794	NM_001618.3	491	Gaa/Aaa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89806408	89806408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	18	417	1	ENST00000389301.3:c.3928G>A	p.Glu1310Lys	p.E1310K	ENST00000389301	NM_000135.2	1310	Gag/Aag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262203	10262203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	21	463	0	ENST00000340748.4:c.2088G>T	p.Met696Ile	p.M696I	ENST00000340748		696	atG/atT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228811	36228811	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	43	609	0	ENST00000222270.7:c.7710G>C	p.Lys2570Asn	p.K2570N	ENST00000222270	NM_014727.1	2570	aaG/aaC																																																																															
AGO2	27161	MSKCC	GRCh37	8	141542247	141542247	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	22	352	0	ENST00000220592.5:c.2476G>C	p.Glu826Gln	p.E826Q	ENST00000220592	NM_012154.3	826	Gaa/Caa																																																																															
ATRX	546	MSKCC	GRCh37	X	76907666	76907666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	25	388	0	ENST00000373344.5:c.4495G>A	p.Glu1499Lys	p.E1499K	ENST00000373344	NM_000489.3	1499	Gaa/Aaa																																																																															
NF1	4763	MSKCC	GRCh37	17	29546113	29546113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	11	298	0	ENST00000358273.4:c.1618G>A	p.Glu540Lys	p.E540K	ENST00000358273	NM_001042492.2	540	Gag/Aag																																																																															
ALK	238	MSKCC	GRCh37	2	29551229	29551229	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	37	522	0	ENST00000389048.3:c.1401G>C	p.Glu467Asp	p.E467D	ENST00000389048	NM_004304.4	467	gaG/gaC																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212522516	212522546	+	frameshift_variant	Frame_Shift_Del	DEL	GGTAGTAAATGCAGTCATGACTAGTGGGACC	GGTAGTAAATGCAGTCATGACTAGTGGGACC	-			P-0048855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	14	298	0	ENST00000342788.4:c.1879_1909del	p.Gly627HisfsTer16	p.G627Hfs*16	ENST00000342788	NM_005235.2	627	GGTCCCACTAGTCATGACTGCATTTACTACCca/ca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711891	89711891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	47	343	0	ENST00000371953.3:c.509G>T	p.Ser170Ile	p.S170I	ENST00000371953	NM_000314.4	170	aGt/aTt																																																																															
SDHB	6390	MSKCC	GRCh37	1	17354303	17354303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	66	361	0	ENST00000375499.3:c.481G>A	p.Asp161Asn	p.D161N	ENST00000375499	NM_003000.2	161	Gat/Aat																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244829	46244829	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	70	378	0	ENST00000334344.6:c.2923T>C	p.Ser975Pro	p.S975P	ENST00000334344	NM_152641.2	975	Tca/Cca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271722	15271738	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAACCCGCAGGAAGC	GGGAACCCGCAGGAAGC	-			P-0048859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	115	758	1	ENST00000263388.2:c.6701_6717del	p.Arg2234GlnfsTer2	p.R2234Qfs*2	ENST00000263388	NM_000435.2	2234	cGCTTCCTGCGGGTTCCC/c																																																																															
HGF	3082	MSKCC	GRCh37	7	81332072	81332072	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0048859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	32	169	1	ENST00000222390.5:c.2012G>T	p.Gly671Val	p.G671V	ENST00000222390	NM_000601.4	671	gGg/gTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046324	69046324	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	62	335	0	ENST00000288368.4:c.3797T>A	p.Val1266Asp	p.V1266D	ENST00000288368	NM_024870.2	1266	gTt/gAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0048868-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			397	105	328	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273962	10273962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048868-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			721	69	663	0	ENST00000330684.3:c.307G>A	p.Asp103Asn	p.D103N	ENST00000330684	NM_001134407.1	103	Gac/Aac																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797221	135797221	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048868-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			233	40	197	0	ENST00000298552.3:c.648del	p.Phe216LeufsTer8	p.F216Lfs*8	ENST00000298552	NM_001162426.1	216	ttT/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	375	313	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EP300	2033	MSKCC	GRCh37	22	41533773	41533773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	23	348	2	ENST00000263253.7:c.1739G>A	p.Arg580Gln	p.R580Q	ENST00000263253	NM_001429.3	580	cGa/cAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827961	40827961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	94	392	0	ENST00000373198.4:c.2467G>A	p.Ala823Thr	p.A823T	ENST00000373198	NM_133170.3	823	Gcc/Acc																																																																															
ATM	472	MSKCC	GRCh37	11	108106557	108106557	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	105	232	0	ENST00000278616.4:c.492G>A	p.Trp164Ter	p.W164*	ENST00000278616	NM_000051.3	164	tgG/tgA																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866707	37866707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	360	546	0	ENST00000269571.5:c.874G>T	p.Gly292Cys	p.G292C	ENST00000269571		292	Ggc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221950	1221950	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0049026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	548	714	0	ENST00000326873.7:c.865del	p.Met289CysfsTer47	p.M289Cfs*47	ENST00000326873	NM_000455.4	289	Atg/tg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513276	106513276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	152	242	0	ENST00000359195.3:c.2180C>T	p.Ala727Val	p.A727V	ENST00000359195	NM_002649.2	727	gCc/gTc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69002922	69002922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	67	228	2	ENST00000288368.4:c.2222C>T	p.Ala741Val	p.A741V	ENST00000288368	NM_024870.2	741	gCc/gTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411673	63411673	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	299	638	0	ENST00000330258.3:c.1494C>G	p.Asp498Glu	p.D498E	ENST00000330258	NM_152424.3	498	gaC/gaG																																																																															
BRAF	673	MSKCC	GRCh37	7	140453987	140453987	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	99	209	0	ENST00000288602.6:c.1741A>T	p.Asn581Tyr	p.N581Y	ENST00000288602	NM_004333.4	581	Aat/Tat																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843595	156843595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139875058		P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	72	816	0	ENST00000524377.1:c.1021G>A	p.Val341Met	p.V341M	ENST00000524377	NM_002529.3	341	Gtg/Atg																																																																															
AKT1	207	MSKCC	GRCh37	14	105239245	105239245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	46	637	0	ENST00000349310.3:c.1142C>T	p.Ser381Leu	p.S381L	ENST00000349310	NM_001014432.1	381	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579575	7579575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	98	670	1	ENST00000269305.4:c.112C>T	p.Gln38Ter	p.Q38*	ENST00000269305	NM_001126112.2	38	Caa/Taa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993237	72993237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	140	752	3	ENST00000268489.5:c.808G>A	p.Asp270Asn	p.D270N	ENST00000268489	NM_006885.3	270	Gat/Aat																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78727843	78727843	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	140	661	0	ENST00000306801.3:c.688C>G	p.Gln230Glu	p.Q230E	ENST00000306801	NM_020761.2	230	Cag/Gag																																																																															
LMO1	4004	MSKCC	GRCh37	11	8248561	8248561	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	58	795	0	ENST00000335790.3:c.326A>T	p.Tyr109Phe	p.Y109F	ENST00000335790	NM_002315.2	109	tAt/tTt																																																																															
ARAF	369	MSKCC	GRCh37	X	47426121	47426121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	331	417	0	ENST00000377045.4:c.641C>T	p.Ser214Phe	p.S214F	ENST00000377045	NM_001654.4	214	tCc/tTc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185190956	185190956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	71	742	0	ENST00000265026.3:c.1837G>A	p.Glu613Lys	p.E613K	ENST00000265026	NM_004721.4	613	Gaa/Aaa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883998	37883998	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	96	810	0	ENST00000269571.5:c.3469C>G	p.Leu1157Val	p.L1157V	ENST00000269571		1157	Ctg/Gtg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978330	2978330	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	155	713	0	ENST00000396946.4:c.1000G>C	p.Glu334Gln	p.E334Q	ENST00000396946	NM_032415.4	334	Gag/Cag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348371	89348371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	95	780	1	ENST00000301030.4:c.4579G>A	p.Asp1527Asn	p.D1527N	ENST00000301030	NM_001256183.1	1527	Gat/Aat																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602473	10602473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	162	930	0	ENST00000171111.5:c.1105G>T	p.Val369Leu	p.V369L	ENST00000171111	NM_203500.1	369	Gtg/Ttg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971098	21971098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	103	516	0	ENST00000304494.5:c.260G>T	p.Arg87Leu	p.R87L	ENST00000304494	NM_000077.4	87	cGg/cTg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30103654	30103654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	74	476	1	ENST00000331968.5:c.1284G>T	p.Trp428Cys	p.W428C	ENST00000331968	NM_002742.2	428	tgG/tgT																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463296	25463296	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	127	477	0	ENST00000264709.3:c.2197G>C	p.Glu733Gln	p.E733Q	ENST00000264709	NM_175629.2	733	Gag/Cag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299072	15299072	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	103	626	0	ENST00000263388.2:c.1466A>G	p.Asn489Ser	p.N489S	ENST00000263388	NM_000435.2	489	aAt/aGt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478927	56478927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	68	640	0	ENST00000267101.3:c.383G>T	p.Ser128Ile	p.S128I	ENST00000267101	NM_001982.3	128	aGc/aTc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248683	212248683	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	97	433	0	ENST00000342788.4:c.3584C>G	p.Pro1195Arg	p.P1195R	ENST00000342788	NM_005235.2	1195	cCa/cGa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93969193	93969193	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	20	234	0	ENST00000369303.4:c.1803A>C	p.Lys601Asn	p.K601N	ENST00000369303	NM_004440.3	601	aaA/aaC																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012403	176012404	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AG			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	21	322	0	ENST00000367669.3:c.1531-1_1531delinsCT		p.X511_splice	ENST00000367669	NM_022457.5	511																																																																																
IKBKE	9641	MSKCC	GRCh37	1	206648310	206648310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	60	641	0	ENST00000367120.3:c.331G>A	p.Glu111Lys	p.E111K	ENST00000367120	NM_014002.3	111	Gag/Aag																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94192723	94192723	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	45	326	0	ENST00000323929.3:c.1351G>T	p.Glu451Ter	p.E451*	ENST00000323929	NM_005591.3	451	Gaa/Taa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343490	118343490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	39	372	1	ENST00000534358.1:c.1616G>T	p.Gly539Val	p.G539V	ENST00000534358	NM_005933.3	539	gGa/gTa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81574742	81574742	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	24	302	0	ENST00000298171.2:c.638T>G	p.Leu213Arg	p.L213R	ENST00000298171	NM_000369.2	213	cTg/cGg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95571552	95571552	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	35	362	0	ENST00000343455.3:c.3125C>G	p.Pro1042Arg	p.P1042R	ENST00000343455	NM_177438.2	1042	cCa/cGa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013741	12013741	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	69	241	0	ENST00000353533.5:c.683G>A	p.Arg228Lys	p.R228K	ENST00000353533	NM_003010.3	228	aGa/aAa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45422969	45422969	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	69	335	0	ENST00000262160.6:c.159G>C	p.Lys53Asn	p.K53N	ENST00000262160	NM_005901.5	53	aaG/aaC																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128047360	128047360	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	76	391	0	ENST00000285398.2:c.562C>G	p.Leu188Val	p.L188V	ENST00000285398	NM_000122.1	188	Ctt/Gtt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248588	212248588	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	57	477	0	ENST00000342788.4:c.3679C>G	p.Leu1227Val	p.L1227V	ENST00000342788	NM_005235.2	1227	Ctg/Gtg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660301	227660301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	53	605	0	ENST00000305123.5:c.3154G>A	p.Glu1052Lys	p.E1052K	ENST00000305123	NM_005544.2	1052	Gag/Aag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662074	227662074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	227	678	0	ENST00000305123.5:c.1381G>C	p.Glu461Gln	p.E461Q	ENST00000305123	NM_005544.2	461	Gag/Cag																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546839	9546839	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	197	456	0	ENST00000353224.5:c.1183A>G	p.Ile395Val	p.I395V	ENST00000353224	NM_177990.2	395	Atc/Gtc																																																																															
EP300	2033	MSKCC	GRCh37	22	41513603	41513603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	49	581	0	ENST00000263253.7:c.507G>A	p.Met169Ile	p.M169I	ENST00000263253	NM_001429.3	169	atG/atA																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52623180	52623180	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	92	499	0	ENST00000394830.3:c.2871G>T	p.Met957Ile	p.M957I	ENST00000394830	NM_018313.4	957	atG/atT																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498450	89498450	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	28	299	0	ENST00000336596.2:c.2422T>A	p.Trp808Arg	p.W808R	ENST00000336596	NM_005233.5	808	Tgg/Agg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911651	134911651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	44	333	0	ENST00000398015.3:c.2116G>T	p.Asp706Tyr	p.D706Y	ENST00000398015	NM_004441.4	706	Gat/Tat																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127285	55127285	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	85	417	0	ENST00000257290.5:c.73C>G	p.Leu25Val	p.L25V	ENST00000257290	NM_006206.4	25	Ctt/Gtt																																																																															
KDR	3791	MSKCC	GRCh37	4	55956145	55956145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	82	426	0	ENST00000263923.4:c.3170C>A	p.Pro1057Gln	p.P1057Q	ENST00000263923	NM_002253.2	1057	cCa/cAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532737	187532737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	41	401	0	ENST00000441802.2:c.9656C>T	p.Ser3219Leu	p.S3219L	ENST00000441802	NM_005245.3	3219	tCa/tTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630710	187630710	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	39	507	0	ENST00000441802.2:c.272G>C	p.Gly91Ala	p.G91A	ENST00000441802	NM_005245.3	91	gGa/gCa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295226	1295226	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	110	251	0				ENST00000310581	NM_198253.2																																																																																	
FGFR4	2264	MSKCC	GRCh37	5	176522696	176522696	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	69	851	0	ENST00000292408.4:c.1793G>T	p.Arg598Leu	p.R598L	ENST00000292408	NM_213647.1	598	cGa/cTa																																																																															
IRF4	3662	MSKCC	GRCh37	6	394938	394938	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	76	446	0	ENST00000380956.4:c.334G>C	p.Glu112Gln	p.E112Q	ENST00000380956	NM_001195286.1	112	Gag/Cag																																																																															
E2F3	1871	MSKCC	GRCh37	6	20480092	20480092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	83	351	0	ENST00000346618.3:c.409G>C	p.Glu137Gln	p.E137Q	ENST00000346618	NM_001949.4	137	Gag/Cag																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287890	33287890	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	151	466	0	ENST00000374542.5:c.1363G>C	p.Glu455Gln	p.E455Q	ENST00000374542	NM_001141970.1	455	Gag/Cag																																																																															
FYN	2534	MSKCC	GRCh37	6	111995807	111995807	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	34	440	0	ENST00000368678.4:c.1291G>T	p.Ala431Ser	p.A431S	ENST00000368678		431	Gcc/Tcc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285479	38285479	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	91	508	0	ENST00000425967.3:c.674del	p.Gly225AlafsTer23	p.G225Afs*23	ENST00000425967	NM_001174067.1	225	gGc/gc																																																																															
NBN	4683	MSKCC	GRCh37	8	90965473	90965473	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	52	257	0	ENST00000265433.3:c.1844C>G	p.Ser615Cys	p.S615C	ENST00000265433	NM_002485.4	615	tCt/tGt																																																																															
ABL1	25	MSKCC	GRCh37	9	133755916	133755916	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	91	597	0	ENST00000318560.5:c.1543G>T	p.Val515Phe	p.V515F	ENST00000318560	NM_005157.4	515	Gtc/Ttc																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793591	89793591	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	57	280	0	ENST00000336032.3:c.660G>T	p.Leu220Phe	p.L220F	ENST00000336032	NM_006813.2	220	ttG/ttT																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012403	176012403	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	21	322	0	ENST00000367669.3:c.1531G>T	p.Glu511Ter	p.E511*	ENST00000367669	NM_022457.5	511	Gag/Tag																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012404	176012404	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	21	306	0	ENST00000367669.3:c.1531-1G>C		p.X511_splice	ENST00000367669	NM_022457.5	511																																																																																
HGF	3082	MSKCC	GRCh37	7	81372701	81372701	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	23	299	0	ENST00000222390.5:c.833C>A	p.Thr278Asn	p.T278N	ENST00000222390	NM_000601.4	278	aCc/aAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140481417	140481417	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913348		P-0049032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	32	284	0	ENST00000288602.6:c.1391G>T	p.Gly464Val	p.G464V	ENST00000288602	NM_004333.4	464	gGa/gTa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696405	47696405	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	35	374	0	ENST00000347630.2:c.418G>T	p.Asp140Tyr	p.D140Y	ENST00000347630	NM_001007230.1	140	Gat/Tat																																																																															
AMER1	139285	MSKCC	GRCh37	X	63409887	63409887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	67	455	0	ENST00000330258.3:c.3280C>A	p.His1094Asn	p.H1094N	ENST00000330258	NM_152424.3	1094	Cac/Aac																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797129	45797129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	89	698	0	ENST00000372115.3:c.1244G>A	p.Gly415Glu	p.G415E	ENST00000372115	NM_001048171.1	415	gGg/gAg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115252290	115252290	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	139	307	0	ENST00000369535.4:c.350A>T	p.Lys117Met	p.K117M	ENST00000369535	NM_002524.4	117	aAg/aTg																																																																															
SESN3	143686	MSKCC	GRCh37	11	94911911	94911911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	83	359	0	ENST00000536441.1:c.1019G>T	p.Arg340Ile	p.R340I	ENST00000536441	NM_144665.3	340	aGa/aTa																																																																															
PGR	5241	MSKCC	GRCh37	11	100920707	100920707	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	68	337	1	ENST00000325455.5:c.2441G>T	p.Ser814Ile	p.S814I	ENST00000325455	NM_001202474.3	814	aGc/aTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29576134	29576134	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	95	295	0	ENST00000358273.4:c.4107C>A	p.Tyr1369Ter	p.Y1369*	ENST00000358273	NM_001042492.2	1369	taC/taA																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664963	138664963	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	78	230	0	ENST00000330315.3:c.602A>G	p.Asn201Ser	p.N201S	ENST00000330315	NM_023067.3	201	aAc/aGc																																																																															
ATR	545	MSKCC	GRCh37	3	142222259	142222259	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	102	313	0	ENST00000350721.4:c.5233G>T	p.Gly1745Cys	p.G1745C	ENST00000350721	NM_001184.3	1745	Ggt/Tgt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1918615	1918615	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	75	312	0	ENST00000382891.5:c.778C>G	p.Arg260Gly	p.R260G	ENST00000382891	NM_133335.3	260	Cgc/Ggc																																																																															
KIT	3815	MSKCC	GRCh37	4	55570008	55570008	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	39	263	0	ENST00000288135.5:c.875C>G	p.Ala292Gly	p.A292G	ENST00000288135	NM_000222.2	292	gCc/gGc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143067040	143067040	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	47	311	0	ENST00000262992.4:c.1673G>T	p.Gly558Val	p.G558V	ENST00000262992	NM_001101669.1	558	gGa/gTa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754893	57754893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	55	233	0	ENST00000274289.3:c.297G>A	p.Met99Ile	p.M99I	ENST00000274289	NM_006622.3	99	atG/atA																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984012	2984012	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	53	550	0	ENST00000396946.4:c.518T>A	p.Leu173Gln	p.L173Q	ENST00000396946	NM_032415.4	173	cTg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151835937	151835937	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	29	313	0	ENST00000262189.6:c.14587G>C	p.Glu4863Gln	p.E4863Q	ENST00000262189	NM_170606.2	4863	Gag/Cag																																																																															
ABL1	25	MSKCC	GRCh37	9	133759354	133759354	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0049032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	48	406	0	ENST00000318560.5:c.1679-2A>T		p.X560_splice	ENST00000318560	NM_005157.4	560																																																																																
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0049033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	412	628	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
TET1	80312	MSKCC	GRCh37	10	70450847	70450847	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	272	376	0	ENST00000373644.4:c.5687C>A	p.Ala1896Asp	p.A1896D	ENST00000373644	NM_030625.2	1896	gCt/gAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231701	66231701	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	156	294	1	ENST00000273854.3:c.1999G>T	p.Ala667Ser	p.A667S	ENST00000273854	NM_004439.5	667	Gct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	22	317	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	50	555	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637606	52637620	+	frameshift_variant	Frame_Shift_Del	DEL	TCTCCACATCATTAT	TCTCCACATCATTAT	AA			P-0049038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	26	394	1	ENST00000394830.3:c.2696_2710delinsTT	p.His899LeufsTer12	p.H899Lfs*12	ENST00000394830	NM_018313.4	899	cATAATGATGTGGAGAaa/cTTaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	13	282	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0049045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	92	328	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24143269	24143269	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0049045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	227	588	0	ENST00000263121.7:c.500+1G>T		p.X167_splice	ENST00000263121	NM_003073.3	167																																																																																
PGR	5241	MSKCC	GRCh37	11	100922293	100922293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149186732		P-0049045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	43	218	0	ENST00000325455.5:c.2219G>A	p.Arg740Gln	p.R740Q	ENST00000325455	NM_001202474.3	740	cGa/cAa																																																																															
STK11	6794	MSKCC	GRCh37	19	1222987	1222987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	177	424	0	ENST00000326873.7:c.924G>T	p.Trp308Cys	p.W308C	ENST00000326873	NM_000455.4	308	tgG/tgT																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117423	115117423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	99	257	0	ENST00000257566.3:c.751C>T	p.Arg251Trp	p.R251W	ENST00000257566	NM_016569.3	251	Cgg/Tgg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742476	17742476	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	221	583	0	ENST00000250003.3:c.658G>C	p.Ala220Pro	p.A220P	ENST00000250003	NM_002478.4	220	Gcc/Ccc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343835	118343835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	173	391	0	ENST00000534358.1:c.1961C>T	p.Pro654Leu	p.P654L	ENST00000534358	NM_005933.3	654	cCt/cTt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877494	28877494	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	101	288	0	ENST00000282397.4:c.3827C>G	p.Thr1276Ser	p.T1276S	ENST00000282397	NM_002019.4	1276	aCc/aGc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602421	10602421	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	285	690	0	ENST00000171111.5:c.1157del	p.Gly386AlafsTer14	p.G386Afs*14	ENST00000171111	NM_203500.1	386	gGc/gc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30312978	30312978	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	194	459	2	ENST00000262643.3:c.781G>T	p.Asp261Tyr	p.D261Y	ENST00000262643	NM_001238.2	261	Gac/Tac																																																																															
CDK6	1021	MSKCC	GRCh37	7	92300796	92300797	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0049045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	99	353	2	ENST00000265734.4:c.590_591delinsAA	p.Ala197Glu	p.A197E	ENST00000265734	NM_001259.6	197	gCC/gAA																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499687	8499687	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	165	380	0	ENST00000356435.5:c.2282del	p.Gly761AlafsTer5	p.G761Afs*5	ENST00000356435		761	gGc/gc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0049049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	83	325	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552696	18552696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	36	482	1	ENST00000266497.5:c.2107G>A	p.Glu703Lys	p.E703K	ENST00000266497		703	Gaa/Aaa																																																																															
RB1	5925	MSKCC	GRCh37	13	49033971	49033971	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0049049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	18	251	0	ENST00000267163.4:c.2106+2T>G		p.X702_splice	ENST00000267163	NM_000321.2	702																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139399991	139399991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	71	732	1	ENST00000277541.6:c.4357G>A	p.Glu1453Lys	p.E1453K	ENST00000277541	NM_017617.3	1453	Gag/Aag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0049059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	51	221	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717656	89717657	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	136	440	0	ENST00000371953.3:c.683dup	p.Asn228LysfsTer15	p.N228Kfs*15	ENST00000371953	NM_000314.4	227	-/A																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437571	56437572	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	157	561	0	ENST00000407977.2:c.890_891insG	p.Asn297LysfsTer146	p.N297Kfs*146	ENST00000407977		297	aac/aaGc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	349	697	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0049079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	196	428	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602878	10602878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	470	795	0	ENST00000171111.5:c.700C>T	p.Arg234Trp	p.R234W	ENST00000171111	NM_203500.1	234	Cgg/Tgg																																																																															
RET	5979	MSKCC	GRCh37	10	43619203	43619203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	149	558	0	ENST00000355710.3:c.2886C>A	p.Asn962Lys	p.N962K	ENST00000355710	NM_020975.4	962	aaC/aaA																																																																															
TET2	54790	MSKCC	GRCh37	4	106157183	106157183	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	68	337	0	ENST00000380013.4:c.2084T>A	p.Met695Lys	p.M695K	ENST00000380013	NM_001127208.2	695	aTg/aAg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69069662	69069662	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	134	374	0	ENST00000288368.4:c.4337A>C	p.Gln1446Pro	p.Q1446P	ENST00000288368	NM_024870.2	1446	cAg/cCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	166	318	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	178	658	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440430	49440431	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	107	510	0	ENST00000301067.7:c.4379dupC	p.Leu1461ThrfsTer30	p.L1461Tfs*30	ENST00000301067	NM_003482.3	1460	cca/ccCa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851075	63851075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	101	395	0	ENST00000279873.7:c.1853C>A	p.Ala618Asp	p.A618D	ENST00000279873	NM_032199.2	618	gCc/gAc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12037455	12037463	+	inframe_deletion	In_Frame_Del	DEL	CAAAGAATC	CAAAGAATC	-			P-0049090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	175	306	0	ENST00000396373.4:c.1090_1098del	p.Glu364_Lys366del	p.E364_K366del	ENST00000396373	NM_001987.4	362	gaCAAAGAATCc/gac																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422188	81422188	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	92	311	0	ENST00000298171.2:c.164A>G	p.Gln55Arg	p.Q55R	ENST00000298171	NM_000369.2	55	cAg/cGg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89807275	89807275	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0049090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	68	242	0	ENST00000389301.3:c.3766-1G>A		p.X1256_splice	ENST00000389301	NM_000135.2	1256																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40713385	40713385	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs180871064		P-0049090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	162	463	1	ENST00000373198.4:c.4130G>A	p.Arg1377Gln	p.R1377Q	ENST00000373198	NM_133170.3	1377	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	442	511	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	413	518	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	558	310	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106489	27106489	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	437	491	1	ENST00000324856.7:c.6100G>T	p.Glu2034Ter	p.E2034*	ENST00000324856	NM_006015.4	2034	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610364	10610364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	678	683	1	ENST00000171111.5:c.346C>T	p.Arg116Trp	p.R116W	ENST00000171111	NM_203500.1	116	Cgg/Tgg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098895	178098900	+	inframe_deletion	In_Frame_Del	DEL	TTTTTC	TTTTTC	-			P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	168	314	0	ENST00000397062.3:c.145_150del	p.Glu49_Lys50del	p.E49_K50del	ENST00000397062	NM_006164.4	49	GAAAAA/-																																																																															
CUL3	8452	MSKCC	GRCh37	2	225365186	225365186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	352	225	0	ENST00000264414.4:c.1504G>A	p.Asp502Asn	p.D502N	ENST00000264414	NM_003590.4	502	Gat/Aat																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31376772	31376772	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	485	483	0	ENST00000328111.2:c.767C>G	p.Ser256Cys	p.S256C	ENST00000328111	NM_006892.3	256	tCt/tGt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265450	46265450	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	35	219	0	ENST00000371998.3:c.2320A>G	p.Ile774Val	p.I774V	ENST00000371998		774	Att/Gtt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162773	47162774	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	70	299	0	ENST00000409792.3:c.3352_3353delinsTT	p.Glu1118Leu	p.E1118L	ENST00000409792	NM_014159.6	1118	GAa/TTa																																																																															
RHEB	6009	MSKCC	GRCh37	7	151216560	151216560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	190	136	0	ENST00000262187.5:c.38G>A	p.Gly13Asp	p.G13D	ENST00000262187	NM_005614.3	13	gGc/gAc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30132931	30132933	+	frameshift_variant	Frame_Shift_Del	DEL	TAG	TAG	C			P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	423	426	0	ENST00000331968.5:c.668_670delinsG	p.Ser223CysfsTer5	p.S223Cfs*5	ENST00000331968	NM_002742.2	223	tCTAca/tGca																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0049126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	105	305	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913288		P-0049126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	37	302	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983060	201983060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	145	605	0	ENST00000359651.3:c.909C>A	p.Phe303Leu	p.F303L	ENST00000359651		303	ttC/ttA																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198262739	198262739	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	40	348	0	ENST00000335508.6:c.3236A>G	p.Asn1079Ser	p.N1079S	ENST00000335508	NM_012433.2	1079	aAc/aGc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912343	32912343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	27	284	0	ENST00000380152.3:c.3851G>T	p.Ser1284Ile	p.S1284I	ENST00000380152		1284	aGt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579533	7579533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	150	691	0	ENST00000269305.4:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000269305	NM_001126112.2	52	Caa/Taa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210419	36210419	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs567944243		P-0049184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	129	557	1	ENST00000222270.7:c.412C>T	p.Arg138Cys	p.R138C	ENST00000222270	NM_014727.1	138	Cgc/Tgc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912898	50912898	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	63	781	1	ENST00000440232.2:c.2129A>G	p.Lys710Arg	p.K710R	ENST00000440232	NM_002691.3	710	aAg/aGg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713458	40713458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	108	595	0	ENST00000373198.4:c.4057C>T	p.His1353Tyr	p.H1353Y	ENST00000373198	NM_133170.3	1353	Cac/Tac																																																																															
NSD1	64324	MSKCC	GRCh37	5	176719148	176719148	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	35	210	0	ENST00000439151.2:c.6452A>G	p.Lys2151Arg	p.K2151R	ENST00000439151	NM_022455.4	2151	aAg/aGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	39	474	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0049186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	24	707	0	ENST00000269305.4:c.376T>C	p.Tyr126His	p.Y126H	ENST00000269305	NM_001126112.2	126	Tac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0049191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	271	632	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	140	431	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0049191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	168	247	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
ATM	472	MSKCC	GRCh37	11	108235925	108235925	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	77	364	0	ENST00000278616.4:c.8967A>C	p.Gln2989His	p.Q2989H	ENST00000278616	NM_000051.3	2989	caA/caC																																																																															
NPM1	4869	MSKCC	GRCh37	5	170827859	170827859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	11	186	0	ENST00000296930.5:c.599C>T	p.Pro200Leu	p.P200L	ENST00000296930	NM_002520.6	200	cCa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0049193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	250	768	7	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0049193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	124	400	2	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175536	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	70	336	1	ENST00000257430.4:c.4245del	p.Ser1415ArgfsTer4	p.S1415Rfs*4	ENST00000257430	NM_000038.5	1415	agT/ag																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0049193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	103	350	2	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81934239	81934239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	45	708	1	ENST00000359376.3:c.1216G>A	p.Glu406Lys	p.E406K	ENST00000359376	NM_002661.3	406	Gag/Aag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	198	521	2	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054630	5054630	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	65	354	0	ENST00000381652.3:c.682C>T	p.Arg228Ter	p.R228*	ENST00000381652	NM_004972.3	228	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0049197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	360	479	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163318823	163318823	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	118	332	0	ENST00000271452.3:c.1213A>T	p.Ile405Phe	p.I405F	ENST00000271452	NM_145697.2	405	Att/Ttt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061866	38061874	+	inframe_deletion	In_Frame_Del	DEL	CATGGAGCC	CATGGAGCC	-			P-0049197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	215	659	1	ENST00000250448.2:c.115_123del	p.Gly39_Met41del	p.G39_M41del	ENST00000250448	NM_004496.3	39	GGCTCCATG/-																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031834	10031834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	222	548	1	ENST00000330684.3:c.989C>T	p.Pro330Leu	p.P330L	ENST00000330684	NM_001134407.1	330	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579428	7579429	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0049197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	398	714	0	ENST00000269305.4:c.258_259del	p.Pro87SerfsTer61	p.P87Sfs*61	ENST00000269305	NM_001126112.2	86	gcACca/gcca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790153	40790153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	124	585	1	ENST00000373198.4:c.2578C>T	p.Pro860Ser	p.P860S	ENST00000373198	NM_133170.3	860	Ccc/Tcc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041725	47041725	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0049197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	137	208	0	ENST00000329236.7:c.1716G>C	p.Gln572His	p.Q572H	ENST00000329236	NM_001204466.1	572	caG/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0049221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	93	487	1	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78432437	78432437	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0049221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	36	340	0	ENST00000370768.2:c.416-2A>G		p.X139_splice	ENST00000370768	NM_003902.3	139																																																																																
GLI1	2735	MSKCC	GRCh37	12	57864364	57864364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	79	733	0	ENST00000228682.2:c.1841G>T	p.Gly614Val	p.G614V	ENST00000228682	NM_005269.2	614	gGt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220442	1220442	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	120	681	0	ENST00000326873.7:c.536del	p.Pro179ArgfsTer108	p.P179Rfs*108	ENST00000326873	NM_000455.4	179	Ccg/cg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599867	10599868	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0049221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	113	515	1	ENST00000171111.5:c.1708_1708+1delinsTT		p.X570_splice	ENST00000171111	NM_203500.1	570																																																																																
ERCC2	2068	MSKCC	GRCh37	19	45873447	45873447	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	226	583	0	ENST00000391945.4:c.49A>T	p.Ile17Phe	p.I17F	ENST00000391945	NM_000400.3	17	Atc/Ttc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610705	52610706	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0049221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	30	324	0	ENST00000394830.3:c.3467_3468del	p.Lys1156SerfsTer24	p.K1156Sfs*24	ENST00000394830	NM_018313.4	1156	aAA/a																																																																															
KIT	3815	MSKCC	GRCh37	4	55594027	55594027	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	46	319	0	ENST00000288135.5:c.1813G>C	p.Glu605Gln	p.E605Q	ENST00000288135	NM_000222.2	605	Gag/Cag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66218809	66218809	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	21	242	0	ENST00000273854.3:c.2249T>A	p.Met750Lys	p.M750K	ENST00000273854	NM_004439.5	750	aTg/aAg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535287	66535287	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	70	521	0	ENST00000273854.3:c.174C>A	p.Ser58Arg	p.S58R	ENST00000273854	NM_004439.5	58	agC/agA																																																																															
MSH3	4437	MSKCC	GRCh37	5	80071512	80071512	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0049221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	30	241	0	ENST00000265081.6:c.2254-1G>A		p.X752_splice	ENST00000265081	NM_002439.4	752																																																																																
RBM10	8241	MSKCC	GRCh37	X	47041675	47041675	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	25	251	0	ENST00000329236.7:c.1666A>C	p.Lys556Gln	p.K556Q	ENST00000329236	NM_001204466.1	556	Aag/Cag																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176145075	176145075	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	144	332	0	ENST00000367669.3:c.536A>G	p.Asn179Ser	p.N179S	ENST00000367669	NM_022457.5	179	aAt/aGt																																																																															
POLE	5426	MSKCC	GRCh37	12	133220538	133220538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	165	470	0	ENST00000320574.5:c.4175A>G	p.Asn1392Ser	p.N1392S	ENST00000320574	NM_006231.2	1392	aAc/aGc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59886010	59886010	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	182	514	0	ENST00000259008.2:c.736A>G	p.Ile246Val	p.I246V	ENST00000259008	NM_032043.2	246	Ata/Gta																																																																															
TOP1	7150	MSKCC	GRCh37	20	39746876	39746877	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	92	201	0	ENST00000361337.2:c.1892dup	p.Asn631LysfsTer11	p.N631Kfs*11	ENST00000361337	NM_003286.2	630	-/A																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0049248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	109	341	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627631	37627631	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0049248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	134	529	0	ENST00000447079.4:c.1546A>T	p.Lys516Ter	p.K516*	ENST00000447079	NM_015083.1	516	Aag/Tag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657630	37657630	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0049248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	139	402	0	ENST00000447079.4:c.2547C>G	p.Tyr849Ter	p.Y849*	ENST00000447079	NM_015083.1	849	taC/taG																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59886096	59886096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	185	375	0	ENST00000259008.2:c.650G>A	p.Cys217Tyr	p.C217Y	ENST00000259008	NM_032043.2	217	tGc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0049252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	84	616	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
AXL	558	MSKCC	GRCh37	19	41765523	41765523	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199709000		P-0049252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	82	681	0	ENST00000301178.4:c.2399G>A	p.Arg800Gln	p.R800Q	ENST00000301178	NM_021913.4	800	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	58	188	0	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295271	1295271	+	upstream_gene_variant	5'Flank	SNP	G	G	C			P-0049252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	49	269	0				ENST00000310581	NM_198253.2																																																																																	
PREX2	80243	MSKCC	GRCh37	8	69032483	69032483	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	101	477	0	ENST00000288368.4:c.3557A>G	p.Asp1186Gly	p.D1186G	ENST00000288368	NM_024870.2	1186	gAc/gGc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231773	36231773	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	9	465	0	ENST00000300305.3:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000300305		204	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	15	354	0	ENST00000269305.4:c.673-2A>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	61	513	1	ENST00000269305.4:c.920-1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
BABAM1	29086	MSKCC	GRCh37	19	17384762	17384762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	51	586	2	ENST00000359435.4:c.394G>A	p.Val132Met	p.V132M	ENST00000359435	NM_001033549.1	132	Gtg/Atg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37006472	37006472	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	17	238	0	ENST00000358127.4:c.473T>C	p.Ile158Thr	p.I158T	ENST00000358127	NM_001280556.1	158	aTa/aCa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520158	9520158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	37	379	0	ENST00000353224.5:c.2111G>T	p.Gly704Val	p.G704V	ENST00000353224	NM_177990.2	704	gGt/gTt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844801	156844801	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	70	516	0	ENST00000524377.1:c.1354+1G>A		p.X452_splice	ENST00000524377	NM_002529.3	452																																																																																
IRS2	8660	MSKCC	GRCh37	13	110438174	110438174	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	25	126	0	ENST00000375856.3:c.227A>C	p.Tyr76Ser	p.Y76S	ENST00000375856	NM_003749.2	76	tAc/tCc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30105623	30105623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	24	534	2	ENST00000331968.5:c.1063G>T	p.Gly355Trp	p.G355W	ENST00000331968	NM_002742.2	355	Ggg/Tgg																																																																															
MGA	23269	MSKCC	GRCh37	15	42042316	42042350	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGAAAGATGGAGAAAACATCTGAAGGGCCCCTT	AGGGAAAGATGGAGAAAACATCTGAAGGGCCCCTT	-			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	10	431	0	ENST00000219905.7:c.6512_6546del	p.Arg2171AsnfsTer12	p.R2171Nfs*12	ENST00000219905	NM_001164273.1	2171	AGGGAAAGATGGAGAAAACATCTGAAGGGCCCCTTa/a																																																																															
CDH1	999	MSKCC	GRCh37	16	68849659	68849659	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	18	419	0	ENST00000261769.5:c.1562T>C	p.Ile521Thr	p.I521T	ENST00000261769	NM_004360.3	521	aTa/aCa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56348482	56348482	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	14	300	0	ENST00000348428.3:c.290G>T	p.Gly97Val	p.G97V	ENST00000348428	NM_006785.3	97	gGt/gTt																																																																															
BBC3	27113	MSKCC	GRCh37	19	47729983	47729983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	32	276	0	ENST00000449228.1:c.406G>A	p.Ala136Thr	p.A136T	ENST00000449228	NM_001127240.2	136	Gca/Aca																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46281805	46281805	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	43	470	1	ENST00000371998.3:c.4252G>T	p.Gly1418Cys	p.G1418C	ENST00000371998		1418	Ggt/Tgt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750450	57750450	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	23	445	1	ENST00000274289.3:c.2018T>C	p.Met673Thr	p.M673T	ENST00000274289	NM_006622.3	673	aTg/aCg																																																																															
BRAF	673	MSKCC	GRCh37	7	140501336	140501336	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	30	241	0	ENST00000288602.6:c.736G>C	p.Ala246Pro	p.A246P	ENST00000288602	NM_004333.4	246	Gca/Cca																																																																															
BCOR	54880	MSKCC	GRCh37	X	39911374	39911374	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	17	426	0	ENST00000378444.4:c.5256C>A	p.Asp1752Glu	p.D1752E	ENST00000378444	NM_001123385.1	1752	gaC/gaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0049262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	112	325	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	187	488	0	ENST00000269305.4:c.700T>A	p.Tyr234Asn	p.Y234N	ENST00000269305	NM_001126112.2	234	Tac/Aac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106155	27106257	+	frameshift_variant	Frame_Shift_Del	DEL	GACCGAGGATGGAGCTAAGAGTTCAGAGGCCATCAAGGAGAGCAGCAAGTTTCCATTTGGCATTAGCCCAGCACAGAGCCACCGGAACATCAAGATCCTAGAG	GACCGAGGATGGAGCTAAGAGTTCAGAGGCCATCAAGGAGAGCAGCAAGTTTCCATTTGGCATTAGCCCAGCACAGAGCCACCGGAACATCAAGATCCTAGAG	-			P-0049262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	143	381	0	ENST00000324856.7:c.5769_5871del	p.Glu1924AsnfsTer57	p.E1924Nfs*57	ENST00000324856	NM_006015.4	1922	ttGACCGAGGATGGAGCTAAGAGTTCAGAGGCCATCAAGGAGAGCAGCAAGTTTCCATTTGGCATTAGCCCAGCACAGAGCCACCGGAACATCAAGATCCTAGAG/tt																																																																															
SRC	6714	MSKCC	GRCh37	20	36031742	36031742	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	201	525	0	ENST00000358208.4:c.1571C>G	p.Thr524Arg	p.T524R	ENST00000358208		524	aCg/aGg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467437	66467437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	76	303	0	ENST00000273854.3:c.832G>A	p.Ala278Thr	p.A278T	ENST00000273854	NM_004439.5	278	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0049268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	105	437	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120236	70120239	+	frameshift_variant	Frame_Shift_Del	DEL	ACTC	ACTC	TGA			P-0049268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	221	577	1	ENST00000245479.2:c.1238_1241delinsTGA	p.His413LeufsTer57	p.H413Lfs*57	ENST00000245479	NM_000346.3	413	cACTCg/cTGAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	233	576	0	ENST00000269305.4:c.527del	p.Cys176SerfsTer71	p.C176Sfs*71	ENST00000269305	NM_001126112.2	176	tGc/tc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151848602	151848602	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	120	336	0	ENST00000262189.6:c.12591G>A	p.Trp4197Ter	p.W4197*	ENST00000262189	NM_170606.2	4197	tgG/tgA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249013	55249014	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACCCCC			P-0049271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	63	508	0	ENST00000275493.2:c.2314_2319dupCCCCAC	p.Pro772_His773dup	p.P772_H773dup	ENST00000275493	NM_005228.3	772	aac/aACCCCCac																																																																															
FLCN	201163	MSKCC	GRCh37	17	17118405	17118405	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0049271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	48	641	0	ENST00000285071.4:c.1433-1G>C		p.X478_splice	ENST00000285071	NM_144997.5	478																																																																																
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0049272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	320	485	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0049272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	245	417	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100830	27100830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	113	443	0	ENST00000324856.7:c.4112G>A	p.Arg1371Gln	p.R1371Q	ENST00000324856	NM_006015.4	1371	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114901008	114901008	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	258	503	0	ENST00000543371.1:c.618del	p.Tyr206Ter	p.Y206*	ENST00000543371	NM_001198531.1	206	taC/ta																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99456300	99456300	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	151	313	0	ENST00000268035.6:c.1617T>A	p.Asp539Glu	p.D539E	ENST00000268035	NM_000875.3	539	gaT/gaA																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128016893	128016893	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	112	459	0	ENST00000285398.2:c.2196A>T	p.Glu732Asp	p.E732D	ENST00000285398	NM_000122.1	732	gaA/gaT																																																																															
APC	324	MSKCC	GRCh37	5	112175438	112175439	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	130	268	0	ENST00000257430.4:c.4148dup	p.Met1383IlefsTer3	p.M1383Ifs*3	ENST00000257430	NM_000038.5	1383	atg/aTtg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287206	33287206	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	184	512	0	ENST00000374542.5:c.1891A>C	p.Lys631Gln	p.K631Q	ENST00000374542	NM_001141970.1	631	Aaa/Caa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922202	39922202	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	186	483	0	ENST00000378444.4:c.3970del	p.Ile1324LeufsTer45	p.I1324Lfs*45	ENST00000378444	NM_001123385.1	1324	Att/tt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782596		P-0049275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	180	487	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28601310	28601310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	145	397	0	ENST00000241453.7:c.2122G>A	p.Glu708Lys	p.E708K	ENST00000241453	NM_004119.2	708	Gaa/Aaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717768	89717769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	184	298	0	ENST00000371953.3:c.794dup	p.Asp268GlyfsTer30	p.D268Gfs*30	ENST00000371953	NM_000314.4	265	cta/cTta																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416372	49416372	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0049275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	53	335	0	ENST00000301067.7:c.16338+1G>A		p.X5446_splice	ENST00000301067	NM_003482.3	5446																																																																																
TP53	7157	MSKCC	GRCh37	17	7579389	7579406	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	GGGAAGGGACAGAAGATG	GGGAAGGGACAGAAGATG	-			P-0049275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	54	601	0	ENST00000269305.4:c.281_298del	p.Ser94_Gln100delinsTer	p.S94_Q100delins*	ENST00000269305	NM_001126112.2	94	tCATCTTCTGTCCCTTCCCag/tag																																																																															
ERG	2078	MSKCC	GRCh37	21	39755599	39755599	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	34	453	0	ENST00000288319.7:c.1166A>T	p.Lys389Met	p.K389M	ENST00000288319	NM_182918.3	389	aAg/aTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589622	67589623	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATATGATAGATT			P-0049275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	101	261	0	ENST00000274335.5:c.1392_1403dup	p.Asp464_Tyr467dup	p.D464_Y467dup	ENST00000274335		464	gaa/gaATATGATAGATTa																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123505225	123505226	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0049275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	83	332	0	ENST00000371139.4:c.371_372delinsAT	p.Cys124Tyr	p.C124Y	ENST00000371139	NM_001114937.2	124	tGC/tAT																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	51	628	2	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0049285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	48	431	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109873	115109873	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	30	568	0	ENST00000257566.3:c.2005C>A	p.Pro669Thr	p.P669T	ENST00000257566	NM_016569.3	669	Ccc/Acc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117745	115117745	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	28	325	0	ENST00000257566.3:c.690G>C	p.Trp230Cys	p.W230C	ENST00000257566	NM_016569.3	230	tgG/tgC																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602835	10602835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	81	791	0	ENST00000171111.5:c.743C>T	p.Ala248Val	p.A248V	ENST00000171111	NM_203500.1	248	gCc/gTc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267498	198267498	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	30	381	0	ENST00000335508.6:c.1859T>C	p.Met620Thr	p.M620T	ENST00000335508	NM_012433.2	620	aTg/aCg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039405	47039405	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	57	628	0	ENST00000329236.7:c.797G>C	p.Arg266Pro	p.R266P	ENST00000329236	NM_001204466.1	266	cGc/cCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	154	535	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0049286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	113	342	2	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0049286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	106	394	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs749415085		P-0049286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	126	430	0	ENST00000263967.3:c.112C>A	p.Arg38Ser	p.R38S	ENST00000263967	NM_006218.2	38	Cgt/Agt																																																																															
REL	5966	MSKCC	GRCh37	2	61148906	61148924	+	frameshift_variant	Frame_Shift_Del	DEL	TTGTTTTCTCATGATGCAG	TTGTTTTCTCATGATGCAG	-			P-0049286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	78	261	0	ENST00000295025.8:c.1100_1118del	p.Phe367Ter	p.F367*	ENST00000295025	NM_002908.2	366	TTGTTTTCTCATGATGCAGtt/tt																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913500		P-0049287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	44	277	0	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625386	69625386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	43	675	1	ENST00000334134.2:c.407C>T	p.Thr136Met	p.T136M	ENST00000334134	NM_005247.2	136	aCg/aTg																																																																															
NF2	4771	MSKCC	GRCh37	22	30032833	30032833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	56	359	0	ENST00000338641.4:c.208G>A	p.Asp70Asn	p.D70N	ENST00000338641	NM_000268.3	70	Gac/Aac																																																																															
BRAF	673	MSKCC	GRCh37	7	140507833	140507833	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	41	485	0	ENST00000288602.6:c.638A>C	p.Asp213Ala	p.D213A	ENST00000288602	NM_004333.4	213	gAt/gCt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270487	98270487	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	63	479	0	ENST00000331920.6:c.157C>G	p.Pro53Ala	p.P53A	ENST00000331920	NM_000264.3	53	Ccc/Gcc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039391	47039399	+	inframe_deletion	In_Frame_Del	DEL	GACCCAACT	GACCCAACT	-			P-0049287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	85	350	0	ENST00000329236.7:c.785_793del	p.Thr262_Leu264del	p.T262_L264del	ENST00000329236	NM_001204466.1	261	caGACCCAACTg/cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	173	356	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0049288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	99	586	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44937709	44937709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	81	256	1	ENST00000377967.4:c.2897C>T	p.Pro966Leu	p.P966L	ENST00000377967	NM_021140.2	966	cCt/cTt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056314	26056314	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	77	426	0	ENST00000343677.2:c.343G>T	p.Glu115Ter	p.E115*	ENST00000343677	NM_005319.3	115	Gaa/Taa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805921	32805921	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	91	753	0	ENST00000374899.4:c.90G>C	p.Leu30Phe	p.L30F	ENST00000374899	NM_018833.2	30	ttG/ttC																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139440198	139440198	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	18	131	0	ENST00000277541.6:c.41T>A	p.Leu14Gln	p.L14Q	ENST00000277541	NM_017617.3	14	cTg/cAg																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913233		P-0049289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	114	799	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0049329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	230	380	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	132	263	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0049329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	169	543	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175921	112175921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	49	233	0	ENST00000257430.4:c.4630G>T	p.Glu1544Ter	p.E1544*	ENST00000257430	NM_000038.5	1544	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	149	514	1	ENST00000269305.4:c.644G>A	p.Ser215Asn	p.S215N	ENST00000269305	NM_001126112.2	215	aGt/aAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0049330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	154	435	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578445	7578445	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	142	971	0	ENST00000269305.4:c.485T>A	p.Ile162Asn	p.I162N	ENST00000269305	NM_001126112.2	162	aTc/aAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435771	110435771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	66	312	1	ENST00000375856.3:c.2630C>T	p.Pro877Leu	p.P877L	ENST00000375856	NM_003749.2	877	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	28	420	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771923	135771923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	46	520	0	ENST00000298552.3:c.3194C>T	p.Thr1065Met	p.T1065M	ENST00000298552	NM_001162426.1	1065	aCg/aTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971115	21971116	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0049334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	37	540	0	ENST00000304494.5:c.242_243del	p.Pro81ArgfsTer38	p.P81Rfs*38	ENST00000304494	NM_000077.4	81	cCC/c																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221720	55221720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	34	413	0	ENST00000275493.2:c.764G>A	p.Arg255Gln	p.R255Q	ENST00000275493	NM_005228.3	255	cGa/cAa																																																																															
ATM	472	MSKCC	GRCh37	11	108128246	108128247	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	36	369	0	ENST00000278616.4:c.2294dup	p.Asn765LysfsTer2	p.N765Kfs*2	ENST00000278616	NM_000051.3	763	-/A																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974732	21974732	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	28	361	0	ENST00000304494.5:c.95T>C	p.Leu32Pro	p.L32P	ENST00000304494	NM_000077.4	32	cTg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519991		P-0049336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	54	617	0	ENST00000269305.4:c.536A>C	p.His179Pro	p.H179P	ENST00000269305	NM_001126112.2	179	cAt/cCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398282	+	missense_variant	Missense_Mutation	DNP	CC	CC	GG			P-0049336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	42	416	1	ENST00000256078.4:c.37_38inv	p.Gly13Pro	p.G13P	ENST00000256078	NM_033360.2	13	GGc/CCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0049343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	60	591	1	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028660	12028660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12	35	359	0	ENST00000353533.5:c.863C>T	p.Ser288Phe	p.S288F	ENST00000353533	NM_003010.3	288	tCt/tTt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115903	8115904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	61	576	2	ENST00000346208.3:c.1251dupC	p.Thr418HisfsTer89	p.T418Hfs*89	ENST00000346208		417	acc/aCcc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991697	72991699	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0049343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	11	311	2	ENST00000268489.5:c.2346_2348del	p.Ala784del	p.A784del	ENST00000268489	NM_006885.3	782	gcGGCa/gca																																																																															
MDM2	4193	MSKCC	GRCh37	12	69230527	69230527	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	10	209	0	ENST00000462284.1:c.916G>A	p.Ala306Thr	p.A306T	ENST00000462284	NM_002392.5	306	Gct/Act																																																																															
JAK2	3717	MSKCC	GRCh37	9	5022025	5022025	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	27	412	25	ENST00000381652.3:c.38G>C	p.Gly13Ala	p.G13A	ENST00000381652	NM_004972.3	13	gGa/gCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0049345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	18	307	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68853186	68853186	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0049345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	21	363	0	ENST00000261769.5:c.1569T>A	p.Tyr523Ter	p.Y523*	ENST00000261769	NM_004360.3	523	taT/taA																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129145	2129145	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	39	556	0	ENST00000219476.3:c.3079C>A	p.Leu1027Met	p.L1027M	ENST00000219476	NM_000548.3	1027	Ctg/Atg																																																																															
RB1	5925	MSKCC	GRCh37	13	48954327	48954327	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	79	338	0	ENST00000267163.4:c.1448A>G	p.His483Arg	p.H483R	ENST00000267163	NM_000321.2	483	cAt/cGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845806	72845806	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0049439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	74	631	1	ENST00000268489.5:c.3661C>T	p.Gln1221Ter	p.Q1221*	ENST00000268489	NM_006885.3	1221	Cag/Tag																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763490	59763490	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	108	594	0	ENST00000259008.2:c.2612A>T	p.His871Leu	p.H871L	ENST00000259008	NM_032043.2	871	cAt/cTt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221249	36221249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	222	821	2	ENST00000222270.7:c.5083G>A	p.Val1695Met	p.V1695M	ENST00000222270	NM_014727.1	1695	Gtg/Atg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44733213	44733213	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	166	291	0	ENST00000377967.4:c.205A>G	p.Thr69Ala	p.T69A	ENST00000377967	NM_021140.2	69	Acg/Gcg																																																																															
TEK	7010	MSKCC	GRCh37	9	27205056	27205056	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	391	569	0	ENST00000380036.4:c.2360del	p.Asn787ThrfsTer2	p.N787Tfs*2	ENST00000380036	NM_000459.3	786	cAa/ca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427060	49427061	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0049441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	461	747	0	ENST00000301067.7:c.11427_11428del	p.Leu3810AlafsTer201	p.L3810Afs*201	ENST00000301067	NM_003482.3	3809	gtGTtg/gttg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2108798	2108798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	602	911	0	ENST00000219476.3:c.899G>T	p.Gly300Val	p.G300V	ENST00000219476	NM_000548.3	300	gGc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578194	7578195	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0049441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	461	711	0	ENST00000269305.4:c.654_655del	p.Pro219LeufsTer2	p.P219Lfs*2	ENST00000269305	NM_001126112.2	218	gtGCcc/gtcc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46602958	46602958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	463	814	2	ENST00000263734.3:c.1016G>T	p.Cys339Phe	p.C339F	ENST00000263734	NM_001430.4	339	tGt/tTt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530162	212530162	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	116	418	0	ENST00000342788.4:c.1757G>C	p.Gly586Ala	p.G586A	ENST00000342788	NM_005235.2	586	gGc/gCc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117629959	117629970	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ATCATCAGGACA	ATCATCAGGACA	-			P-0049441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	118	366	0	ENST00000368508.3:c.6556_6567del	p.Cys2186_Asp2189del	p.C2186_D2189del	ENST00000368508	NM_002944.2	2186	TGTCCTGATGAT/-																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508771	106508798	+	frameshift_variant	Frame_Shift_Del	DEL	GAAATCTCTGATGGATATTCCCGAAAGC	GAAATCTCTGATGGATATTCCCGAAAGC	-			P-0049441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	297	656	0	ENST00000359195.3:c.765_792del	p.Lys255AsnfsTer30	p.K255Nfs*30	ENST00000359195	NM_002649.2	255	aaGAAATCTCTGATGGATATTCCCGAAAGC/aa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509340	106509340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	318	658	1	ENST00000359195.3:c.1334C>T	p.Ala445Val	p.A445V	ENST00000359195	NM_002649.2	445	gCc/gTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087458	27087458	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	59	590	0	ENST00000324856.7:c.2032C>T	p.Gln678Ter	p.Q678*	ENST00000324856	NM_006015.4	678	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577137	7577137	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	111	564	0	ENST00000269305.4:c.801del	p.Asn268ThrfsTer77	p.N268Tfs*77	ENST00000269305	NM_001126112.2	267	cgG/cg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279965	18279965	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	105	517	0	ENST00000222254.8:c.2048A>G	p.Tyr683Cys	p.Y683C	ENST00000222254	NM_005027.3	683	tAc/tGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087426	27087426	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	45	598	0	ENST00000324856.7:c.2000C>G	p.Ser667Cys	p.S667C	ENST00000324856	NM_006015.4	667	tCc/tGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087552	27087552	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	65	641	0	ENST00000324856.7:c.2126C>G	p.Ser709Cys	p.S709C	ENST00000324856	NM_006015.4	709	tCt/tGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087921	27087921	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	51	595	0	ENST00000324856.7:c.2208C>G	p.Ile736Met	p.I736M	ENST00000324856	NM_006015.4	736	atC/atG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416654	49416654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	101	443	0	ENST00000301067.7:c.16057C>T	p.His5353Tyr	p.H5353Y	ENST00000301067	NM_003482.3	5353	Cat/Tat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178948023	178948023	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	21	256	0	ENST00000263967.3:c.2795T>C	p.Ile932Thr	p.I932T	ENST00000263967	NM_006218.2	932	aTa/aCa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508561	106508561	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	60	365	0	ENST00000359195.3:c.555G>T	p.Met185Ile	p.M185I	ENST00000359195	NM_002649.2	185	atG/atT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440487	49440488	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0049453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	110	615	0	ENST00000301067.7:c.4322_4323del	p.Arg1441ProfsTer5	p.R1441Pfs*5	ENST00000301067	NM_003482.3	1441	cGC/c																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0049456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	23	336	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0049456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	61	544	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385239	41385239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	19	498	0	ENST00000373198.4:c.722G>A	p.Arg241His	p.R241H	ENST00000373198	NM_133170.3	241	cGt/cAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	230	313	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873811	35873811	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	119	356	0	ENST00000216797.5:c.40del	p.Glu14ArgfsTer7	p.E14Rfs*7	ENST00000216797	NM_020529.2	14	Gag/ag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0048102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			261	101	438	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32918787	32918787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			184	14	231	0	ENST00000380152.3:c.6934G>A	p.Asp2312Asn	p.D2312N	ENST00000380152		2312	Gat/Aat																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341344	89341344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			270	44	530	0	ENST00000301030.4:c.7591G>C	p.Glu2531Gln	p.E2531Q	ENST00000301030	NM_001256183.1	2531	Gag/Cag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106676	27106676	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			447	50	659	0	ENST00000324856.7:c.6287C>G	p.Ser2096Ter	p.S2096*	ENST00000324856	NM_006015.4	2096	tCa/tGa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831181	72831181	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			325	36	552	0	ENST00000268489.5:c.5400C>G	p.Phe1800Leu	p.F1800L	ENST00000268489	NM_006885.3	1800	ttC/ttG																																																																															
TP63	8626	MSKCC	GRCh37	3	189582062	189582062	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			373	85	438	0	ENST00000264731.3:c.621G>C	p.Lys207Asn	p.K207N	ENST00000264731	NM_003722.4	207	aaG/aaC																																																																															
CUL3	8452	MSKCC	GRCh37	2	225365093	225365093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			379	42	405	0	ENST00000264414.4:c.1597G>C	p.Glu533Gln	p.E533Q	ENST00000264414	NM_003590.4	533	Gag/Cag																																																																															
ATM	472	MSKCC	GRCh37	11	108098536	108098536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			253	44	346	0	ENST00000278616.4:c.106G>A	p.Asp36Asn	p.D36N	ENST00000278616	NM_000051.3	36	Gat/Aat																																																																															
ATM	472	MSKCC	GRCh37	11	108098572	108098572	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			236	43	286	0	ENST00000278616.4:c.142G>C	p.Asp48His	p.D48H	ENST00000278616	NM_000051.3	48	Gat/Cat																																																																															
ATM	472	MSKCC	GRCh37	11	108122649	108122649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			275	71	452	0	ENST00000278616.4:c.1693G>T	p.Glu565Ter	p.E565*	ENST00000278616	NM_000051.3	565	Gaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108186749	108186749	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			338	86	395	0	ENST00000278616.4:c.6107A>G	p.Tyr2036Cys	p.Y2036C	ENST00000278616	NM_000051.3	2036	tAt/tGt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031965	10031965	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			504	53	694	0	ENST00000330684.3:c.858C>A	p.Tyr286Ter	p.Y286*	ENST00000330684	NM_001134407.1	286	taC/taA																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37865672	37865672	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			440	65	636	0	ENST00000269571.5:c.541C>G	p.Leu181Val	p.L181V	ENST00000269571		181	Ctc/Gtc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41215381	41215381	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			389	42	439	0	ENST00000357654.3:c.5162A>C	p.Gln1721Pro	p.Q1721P	ENST00000357654	NM_007294.3	1721	cAg/cCg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50917042	50917042	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			472	66	756	0	ENST00000440232.2:c.2294T>G	p.Val765Gly	p.V765G	ENST00000440232	NM_002691.3	765	gTg/gGg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793347	242793347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			524	58	805	1	ENST00000334409.5:c.730G>A	p.Glu244Lys	p.E244K	ENST00000334409	NM_005018.2	244	Gag/Aag																																																																															
ERG	2078	MSKCC	GRCh37	21	39775433	39775433	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			458	37	424	0	ENST00000288319.7:c.587G>C	p.Arg196Thr	p.R196T	ENST00000288319	NM_182918.3	196	aGa/aCa																																																																															
NF2	4771	MSKCC	GRCh37	22	30074190	30074190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			289	45	421	0	ENST00000338641.4:c.1452G>A	p.Met484Ile	p.M484I	ENST00000338641	NM_000268.3	484	atG/atA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361199	66361200	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0048102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			300	63	358	0	ENST00000273854.3:c.972_973del	p.His325GlnfsTer5	p.H325Qfs*5	ENST00000273854	NM_004439.5	324	ccTCac/ccac																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38975652	38975652	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			528	40	539	0	ENST00000357387.3:c.876C>G	p.Phe292Leu	p.F292L	ENST00000357387	NM_152756.3	292	ttC/ttG																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741693	145741693	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			598	52	813	0	ENST00000428558.2:c.810G>C	p.Glu270Asp	p.E270D	ENST00000428558	NM_004260.3	270	gaG/gaC																																																																															
ATM	472	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781894		P-0049002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	11	426	1	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578410	7578410	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	320	687	0	ENST00000269305.4:c.520A>T	p.Arg174Trp	p.R174W	ENST00000269305	NM_001126112.2	174	Agg/Tgg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027253	48027253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	40	352	0	ENST00000234420.5:c.2131C>T	p.Pro711Ser	p.P711S	ENST00000234420	NM_000179.2	711	Ccc/Tcc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717719	89717720	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0049004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	248	443	0	ENST00000371953.3:c.750_751del	p.Cys250TrpfsTer2	p.C250Wfs*2	ENST00000371953	NM_000314.4	248	ccTGtg/cctg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518120	8518120	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	68	471	1	ENST00000356435.5:c.1271T>A	p.Val424Asp	p.V424D	ENST00000356435		424	gTc/gAc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864613	57864613	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	91	833	0	ENST00000228682.2:c.2090C>A	p.Ala697Asp	p.A697D	ENST00000228682	NM_005269.2	697	gCc/gAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912941	32912942	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0049004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	79	506	0	ENST00000380152.3:c.4450_4451del	p.Asp1484HisfsTer3	p.D1484Hfs*3	ENST00000380152		1483	acAGac/acac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061019	38061030	+	inframe_deletion	In_Frame_Del	DEL	GCGCGCCCTCTA	GCGCGCCCTCTA	-			P-0049004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	736	344	0	ENST00000250448.2:c.959_970del	p.Leu320_Ala323del	p.L320_A323del	ENST00000250448	NM_004496.3	320	cTAGAGGGCGCGCcg/ccg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89849437	89849553	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGGCCAATGAGATGTAGTCTGTGAGGAGGGAGCGGTACTTGCCGGGAACCAGGGGTGGGTGGAGAATGTGCACCTGAGGATAGATAGCAGAGCGCAGCACCGTTAGTCTGGGAACT	TTGGCCAATGAGATGTAGTCTGTGAGGAGGGAGCGGTACTTGCCGGGAACCAGGGGTGGGTGGAGAATGTGCACCTGAGGATAGATAGCAGAGCGCAGCACCGTTAGTCTGGGAACT	-			P-0049004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	66	711	0	ENST00000389301.3:c.1471-43_1544del		p.X491_splice	ENST00000389301	NM_000135.2	491																																																																																
NF1	4763	MSKCC	GRCh37	17	29556448	29556448	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	43	488	0	ENST00000358273.4:c.2815A>C	p.Asn939His	p.N939H	ENST00000358273	NM_001042492.2	939	Aat/Cat																																																																															
INSR	3643	MSKCC	GRCh37	19	7117391	7117391	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	82	690	0	ENST00000302850.5:c.3825C>G	p.Phe1275Leu	p.F1275L	ENST00000302850	NM_000208.2	1275	ttC/ttG																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186506840	186506922	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AACAAGTGGATCGTCATGTTCAGTAGTTTATACATTATGTGAGAAGTAACGTTCTGATTCTTTTTCTTACACAGAATTGGCAG	AACAAGTGGATCGTCATGTTCAGTAGTTTATACATTATGTGAGAAGTAACGTTCTGATTCTTTTTCTTACACAGAATTGGCAG	-			P-0049004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	86	81	0	ENST00000323963.5:c.1080-73_1089del		p.X360_splice	ENST00000323963		360																																																																																
FAT1	2195	MSKCC	GRCh37	4	187519273	187519273	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	67	416	0	ENST00000441802.2:c.12110A>G	p.Tyr4037Cys	p.Y4037C	ENST00000441802	NM_005245.3	4037	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112103018	112103018	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	72	442	0	ENST00000257430.4:c.353T>C	p.Phe118Ser	p.F118S	ENST00000257430	NM_000038.5	118	tTt/tCt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324506	31324507	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0049004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	190	953	0	ENST00000412585.2:c.301_302del	p.Ser101ProfsTer37	p.S101Pfs*37	ENST00000412585	NM_005514.6	101	AGc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	201	718	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50920307	50920307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	212	701	9	ENST00000440232.2:c.3073G>A	p.Val1025Met	p.V1025M	ENST00000440232	NM_002691.3	1025	Gtg/Atg																																																																															
ATM	472	MSKCC	GRCh37	11	108159822	108159822	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	42	114	0	ENST00000278616.4:c.4228A>G	p.Lys1410Glu	p.K1410E	ENST00000278616	NM_000051.3	1410	Aaa/Gaa																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643455	38643455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	127	522	0	ENST00000299084.4:c.925G>A	p.Val309Met	p.V309M	ENST00000299084	NM_152594.2	309	Gtg/Atg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020796	37020796	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	132	374	0	ENST00000358127.4:c.49C>T	p.His17Tyr	p.H17Y	ENST00000358127	NM_001280556.1	17	Cat/Tat																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938563	44938563	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	138	455	0	ENST00000377967.4:c.3111G>C	p.Gln1037His	p.Q1037H	ENST00000377967	NM_021140.2	1037	caG/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7579485	7579485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	172	753	0	ENST00000269305.4:c.202G>T	p.Glu68Ter	p.E68*	ENST00000269305	NM_001126112.2	68	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602252	10602252	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0049006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	97	583	0	ENST00000171111.5:c.1325+1G>A		p.X442_splice	ENST00000171111	NM_203500.1	442																																																																																
WHSC1	7468	MSKCC	GRCh37	4	1955060	1955060	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	68	557	0	ENST00000382891.5:c.2147C>A	p.Ser716Ter	p.S716*	ENST00000382891	NM_133335.3	716	tCa/tAa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741823	145741823	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	78	783	0	ENST00000428558.2:c.680T>C	p.Val227Ala	p.V227A	ENST00000428558	NM_004260.3	227	gTc/gCc																																																																															
BTK	695	MSKCC	GRCh37	X	100615121	100615121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	61	256	0	ENST00000308731.7:c.794C>G	p.Pro265Arg	p.P265R	ENST00000308731	NM_000061.2	265	cCt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380277	+	inframe_insertion	In_Frame_Ins	INS	-	-	GACCTGCTGTGTCGAGAATATCCAAGA			P-0049113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	46	420	0	ENST00000256078.4:c.155_181dup	p.Leu52_Gly60dup	p.L52_G60dup	ENST00000256078	NM_033360.2	52	caa/cTCTTGGATATTCTCGACACAGCAGGTCaa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30047522	30047522	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	68	344	0	ENST00000331968.5:c.2479C>G	p.Arg827Gly	p.R827G	ENST00000331968	NM_002742.2	827	Cgc/Ggc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44879855	44879855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0049117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	83	137	0	ENST00000377967.4:c.444G>A	p.Trp148Ter	p.W148*	ENST00000377967	NM_021140.2	148	tgG/tgA																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023122	31023128	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCTCA	TGGCTCA	GG			P-0049117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	145	534	1	ENST00000375687.4:c.2607_2613delinsGG	p.Gly870ValfsTer8	p.G870Vfs*8	ENST00000375687	NM_015338.5	869	ggTGGCTCA/ggGG																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912242	32912258	+	frameshift_variant	Frame_Shift_Del	DEL	AACTTCTGCAGAGGTAC	AACTTCTGCAGAGGTAC	-			P-0049119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	151	370	0	ENST00000380152.3:c.3751_3767del	p.Thr1251SerfsTer8	p.T1251Sfs*8	ENST00000380152		1250	gaAACTTCTGCAGAGGTACat/gaat																																																																															
MGA	23269	MSKCC	GRCh37	15	42000359	42000359	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	122	281	0	ENST00000219905.7:c.2378A>T	p.Lys793Met	p.K793M	ENST00000219905	NM_001164273.1	793	aAg/aTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134688	2134688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	263	652	2	ENST00000219476.3:c.4465G>A	p.Ala1489Thr	p.A1489T	ENST00000219476	NM_000548.3	1489	Gca/Aca																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30134505	30134505	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	89	208	0	ENST00000263025.4:c.26G>T	p.Gly9Val	p.G9V	ENST00000263025	NM_002746.2	9	gGc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040686-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	360	440	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111884940	111884940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040686-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			496	69	506	1	ENST00000341259.2:c.938C>T	p.Thr313Ile	p.T313I	ENST00000341259	NM_005475.2	313	aCa/aTa																																																																															
POLE	5426	MSKCC	GRCh37	12	133240676	133240676	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040686-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			550	79	610	1	ENST00000320574.5:c.2620G>T	p.Glu874Ter	p.E874*	ENST00000320574	NM_006231.2	874	Gaa/Taa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962952	2962953	+	stop_gained	Nonsense_Mutation	DNP	CG	CG	TC			P-0040686-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			705	42	740	2	ENST00000396946.4:c.1955_1956delinsGA	p.Ser652Ter	p.S652*	ENST00000396946	NM_032415.4	652	tCG/tGA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	58	411	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MAX	4149	MSKCC	GRCh37	14	65544683	65544684	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0048792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	104	654	0	ENST00000358664.4:c.242_243del	p.His81ProfsTer5	p.H81Pfs*5	ENST00000358664	NM_002382.4	81	cAC/c																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794118	242794118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	233	581	0	ENST00000334409.5:c.610C>T	p.Arg204Cys	p.R204C	ENST00000334409	NM_005018.2	204	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0048919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	479	468	0	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
APC	324	MSKCC	GRCh37	5	112178904	112178904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	170	388	0	ENST00000257430.4:c.7613G>A	p.Arg2538Lys	p.R2538K	ENST00000257430	NM_000038.5	2538	aGa/aAa																																																																															
PARP1	142	MSKCC	GRCh37	1	226561941	226561941	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	96	491	0	ENST00000366794.5:c.2056A>G	p.Met686Val	p.M686V	ENST00000366794	NM_001618.3	686	Atg/Gtg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945564	151945591	+	frameshift_variant	Frame_Shift_Del	DEL	TTTTCTGTCACTTCCATTTTATCTTCAA	TTTTCTGTCACTTCCATTTTATCTTCAA	-			P-0048919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	142	200	0	ENST00000262189.6:c.1928_1955del	p.Ile643ThrfsTer19	p.I643Tfs*19	ENST00000262189	NM_170606.2	643	aTTGAAGATAAAATGGAAGTGACAGAAAAc/ac																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249840	110249840	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	435	640	0	ENST00000374672.4:c.835C>A	p.Gln279Lys	p.Q279K	ENST00000374672	NM_004235.4	279	Cag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	41	480	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	52	428	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0048920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	24	345	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821620	+	inframe_deletion	In_Frame_Del	DEL	GCCGCCGCCGCCGCCGCCGCCGCCACC	GCCGCCGCCGCCGCCGCCGCCGCCACC	-			P-0048920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	19	69	1	ENST00000268489.5:c.10555_10581del	p.Gly3519_Gly3527del	p.G3519_G3527del	ENST00000268489	NM_006885.3	3519	GGTGGCGGCGGCGGCGGCGGCGGCGGC/-																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151849921	151849921	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	GAG			P-0048920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	38	445	0	ENST00000262189.6:c.12395delinsCTC	p.Ile4132ThrfsTer27	p.I4132Tfs*27	ENST00000262189	NM_170606.2	4132	aTc/aCTCc																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68758609	68758609	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	115	315	0	ENST00000487270.1:c.765G>C	p.Leu255Phe	p.L255F	ENST00000487270	NM_133509.3	255	ttG/ttC																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981232	201981232	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs58166377		P-0048922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	180	602	0	ENST00000359651.3:c.311A>G	p.Asn104Ser	p.N104S	ENST00000359651		104	aAt/aGt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206665076	206665076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	122	297	1	ENST00000367120.3:c.1829G>A	p.Arg610Lys	p.R610K	ENST00000367120	NM_014002.3	610	aGg/aAg																																																																															
ERF	2077	MSKCC	GRCh37	19	42752697	42752697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	86	574	1	ENST00000222329.4:c.1567G>A	p.Gly523Arg	p.G523R	ENST00000222329	NM_006494.2	523	Ggg/Agg																																																																															
SRC	6714	MSKCC	GRCh37	20	36030056	36030056	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	51	511	0	ENST00000358208.4:c.1091C>G	p.Pro364Arg	p.P364R	ENST00000358208		364	cCt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916660	178916661	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0048922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	256	377	0	ENST00000263967.3:c.47_48delinsAT	p.Met16Asn	p.M16N	ENST00000263967	NM_006218.2	16	aTG/aAT																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932761	39932761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	58	651	0	ENST00000378444.4:c.1838G>T	p.Ser613Ile	p.S613I	ENST00000378444	NM_001123385.1	613	aGc/aTc																																																																															
MED12	9968	MSKCC	GRCh37	X	70361188	70361188	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	90	432	0	ENST00000374080.3:c.6376C>A	p.Pro2126Thr	p.P2126T	ENST00000374080		2126	Cct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578192	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CCTCAGGCGGCTCATAG	CCTCAGGCGGCTCATAG	-			P-0048922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	145	497	0	ENST00000269305.4:c.657_672+1del		p.X219_splice	ENST00000269305	NM_001126112.2	219																																																																																
XIAP	331	MSKCC	GRCh37	X	123019818	123019824	+	frameshift_variant	Frame_Shift_Del	DEL	CACGCAG	CACGCAG	AC			P-0048922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	119	550	2	ENST00000355640.3:c.306_312delinsAC	p.Thr103LeufsTer14	p.T103Lfs*14	ENST00000355640		102	gcCACGCAG/gcAC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	417	471	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045016	47045016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	102	669	0	ENST00000329236.7:c.2108C>T	p.Ser703Leu	p.S703L	ENST00000329236	NM_001204466.1	703	tCa/tTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024024	27024024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	33	125	0	ENST00000324856.7:c.1133delC	p.Pro378LeufsTer13	p.P378Lfs*13	ENST00000324856	NM_006015.4	377	aCc/ac																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775716	9775716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	131	646	1	ENST00000377346.4:c.259C>T	p.Arg87Trp	p.R87W	ENST00000377346	NM_005026.3	87	Cgg/Tgg																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99802271	99802271	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	21	170	1	ENST00000280892.6:c.622G>T	p.Gly208Ter	p.G208*	ENST00000280892	NM_001130678.1	208	Gga/Tga																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876272	35876272	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	37	528	0	ENST00000303115.3:c.1064T>G	p.Val355Gly	p.V355G	ENST00000303115	NM_002185.3	355	gTc/gGc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38186901	38186901	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	36	504	0	ENST00000317025.8:c.1576A>G	p.Thr526Ala	p.T526A	ENST00000317025	NM_023034.1	526	Aca/Gca																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101908864	101908864	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	77	548	0	ENST00000374994.4:c.1228G>T	p.Glu410Ter	p.E410*	ENST00000374994	NM_004612.2	410	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0048925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	366	425	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0048925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	161	351	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
MST1	4485	MSKCC	GRCh37	3	49723126	49723128	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0048925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	53	452	0	ENST00000449682.2:c.1288_1290delGAG	p.Glu430del	p.E430del	ENST00000449682	NM_020998.3	430	GAG/-																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729775	41729775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	220	346	0	ENST00000242208.4:c.754G>A	p.Ala252Thr	p.A252T	ENST00000242208	NM_002192.2	252	Gcc/Acc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332577	153332577	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	152	335	0	ENST00000281708.4:c.379C>T	p.Gln127Ter	p.Q127*	ENST00000281708	NM_033632.3	127	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604797	48604797	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	219	335	0	ENST00000342988.3:c.1619T>C	p.Leu540Pro	p.L540P	ENST00000342988	NM_005359.5	540	cTt/cCt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28893604	28893604	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	212	423	1	ENST00000282397.4:c.3242A>T	p.Asp1081Val	p.D1081V	ENST00000282397	NM_002019.4	1081	gAc/gTc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701870	43701870	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	164	317	0	ENST00000382044.4:c.5375T>G	p.Ile1792Ser	p.I1792S	ENST00000382044	NM_001141980.1	1792	aTc/aGc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78931510	78931510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	547	502	0	ENST00000306801.3:c.3457G>A	p.Asp1153Asn	p.D1153N	ENST00000306801	NM_020761.2	1153	Gac/Aac																																																																															
TP63	8626	MSKCC	GRCh37	3	189455546	189455546	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	52	394	0	ENST00000264731.3:c.80C>A	p.Ala27Asp	p.A27D	ENST00000264731	NM_003722.4	27	gCt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175751	112175752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTATTACAT			P-0048925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	160	344	0	ENST00000257430.4:c.4464_4473dup	p.Ala1492IlefsTer25	p.A1492Ifs*25	ENST00000257430	NM_000038.5	1487	act/acTTTATTACATt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117663629	117663629	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	163	493	0	ENST00000368508.3:c.4603del	p.Tyr1535IlefsTer68	p.Y1535Ifs*68	ENST00000368508	NM_002944.2	1535	Tat/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	111	459	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0048934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	105	461	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0048934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	120	359	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108196879	108196880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	97	368	0	ENST00000278616.4:c.6908dupA	p.Glu2304GlyfsTer69	p.E2304Gfs*69	ENST00000278616	NM_000051.3	2301	gca/gcAa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591140	67591145	+	inframe_deletion	In_Frame_Del	DEL	ACCAAT	ACCAAT	-			P-0048934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	69	280	0	ENST00000274335.5:c.1735_1740del	p.Gln579_Tyr580del	p.Q579_Y580del	ENST00000274335		578	gACCAATac/gac																																																																															
APC	324	MSKCC	GRCh37	5	112174349	112174349	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	57	254	0	ENST00000257430.4:c.3058G>T	p.Glu1020Ter	p.E1020*	ENST00000257430	NM_000038.5	1020	Gaa/Taa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589609	67589610	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	79	274	0	ENST00000274335.5:c.1378dupA	p.Ser460LysfsTer5	p.S460Kfs*5	ENST00000274335		458	gaa/gAaa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696449	47696449	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	49	387	0	ENST00000347630.2:c.374T>G	p.Phe125Cys	p.F125C	ENST00000347630	NM_001007230.1	125	tTt/tGt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026101	71026116	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCGCGTTGCGTCGG	GGCCGCGTTGCGTCGG	-			P-0048935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	13	345	0	ENST00000318789.4:c.1506_1521del	p.Phe502LeufsTer20	p.F502Lfs*20	ENST00000318789	NM_032682.5	502	ttCCGACGCAACGCGGCC/tt																																																																															
APC	324	MSKCC	GRCh37	5	112177235	112177238	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0048935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	27	316	0	ENST00000257430.4:c.5947_5950del	p.Glu1983MetfsTer60	p.E1983Mfs*60	ENST00000257430	NM_000038.5	1982	AAAGaa/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	182	372	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256831	16256831	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	43	466	0	ENST00000375759.3:c.4096C>T	p.Arg1366Ter	p.R1366*	ENST00000375759	NM_015001.2	1366	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0048949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	200	610	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662023	227662023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	149	568	0	ENST00000305123.5:c.1432G>A	p.Ala478Thr	p.A478T	ENST00000305123	NM_005544.2	478	Gcc/Acc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137060	64137060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370422690		P-0048949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	161	598	2	ENST00000334205.4:c.1571C>T	p.Ala524Val	p.A524V	ENST00000334205	NM_003942.2	524	gCg/gTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488683	212488683	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	126	400	0	ENST00000342788.4:c.2166A>C	p.Lys722Asn	p.K722N	ENST00000342788	NM_005235.2	722	aaA/aaC																																																																															
APC	324	MSKCC	GRCh37	5	112174372	112174372	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0048949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	157	281	0	ENST00000257430.4:c.3081T>G	p.Tyr1027Ter	p.Y1027*	ENST00000257430	NM_000038.5	1027	taT/taG																																																																															
CDH1	999	MSKCC	GRCh37	16	68842603	68842603	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	188	515	0	ENST00000261769.5:c.539C>A	p.Ser180Tyr	p.S180Y	ENST00000261769	NM_004360.3	180	tCc/tAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228046	36228046	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	263	727	1	ENST00000222270.7:c.7432C>T	p.Gln2478Ter	p.Q2478*	ENST00000222270	NM_014727.1	2478	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	48	243	1	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0048955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	247	683	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873066	134873066	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762457030		P-0048955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	129	569	0	ENST00000398015.3:c.1370C>T	p.Pro457Leu	p.P457L	ENST00000398015	NM_004441.4	457	cCg/cTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089569	27089569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	174	709	0	ENST00000324856.7:c.2525A>G	p.His842Arg	p.H842R	ENST00000324856	NM_006015.4	842	cAt/cGt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	59	492	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16049724	16049724	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	34	428	0	ENST00000268712.3:c.1048C>T	p.Arg350Ter	p.R350*	ENST00000268712	NM_006311.3	350	Cga/Tga																																																																															
TET1	80312	MSKCC	GRCh37	10	70406444	70406444	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149434944		P-0048980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	86	625	1	ENST00000373644.4:c.3958C>T	p.Arg1320Trp	p.R1320W	ENST00000373644	NM_030625.2	1320	Cgg/Tgg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464412	120464412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	68	489	0	ENST00000256646.2:c.5234C>T	p.Ser1745Leu	p.S1745L	ENST00000256646	NM_024408.3	1745	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7573991	7573992	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	211	684	0	ENST00000269305.4:c.1035dupT	p.Glu346Ter	p.E346*	ENST00000269305	NM_001126112.2	345	-/T																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271765	18271765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	100	706	0	ENST00000222254.8:c.452C>A	p.Pro151His	p.P151H	ENST00000222254	NM_005027.3	151	cCc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175869	112175870	+	missense_variant	Missense_Mutation	DNP	TC	TC	CT			P-0048980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	37	273	0	ENST00000257430.4:c.4578_4579delinsCT	p.Pro1527Ser	p.P1527S	ENST00000257430	NM_000038.5	1526	ccTCca/ccCTca																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94128966	94128966	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	66	408	0	ENST00000369303.4:c.94G>C	p.Glu32Gln	p.E32Q	ENST00000369303	NM_004440.3	32	Gaa/Caa																																																																															
AGO2	27161	MSKCC	GRCh37	8	141583032	141583032	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0048980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	143	473	0	ENST00000220592.5:c.216-1G>T		p.X72_splice	ENST00000220592	NM_012154.3	72																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56487579	56487579	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	12	647	0	ENST00000267101.3:c.1512C>G	p.Cys504Trp	p.C504W	ENST00000267101	NM_001982.3	504	tgC/tgG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913283		P-0048982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	70	450	0	ENST00000263967.3:c.3129G>T	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0048982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	265	819	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891308	101891308	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	114	587	0	ENST00000374994.4:c.269C>A	p.Ser90Ter	p.S90*	ENST00000374994	NM_004612.2	90	tCa/tAa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112448	115112448	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1398394014		P-0048982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	162	728	1	ENST00000257566.3:c.1292C>T	p.Ala431Val	p.A431V	ENST00000257566	NM_016569.3	431	gCg/gTg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429400	78429400	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	122	476	0	ENST00000370768.2:c.1042G>A	p.Ala348Thr	p.A348T	ENST00000370768	NM_003902.3	348	Gct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0048987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	184	375	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0048987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	167	431	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	236	771	0	ENST00000374672.4:c.1225A>C	p.Lys409Gln	p.K409Q	ENST00000374672	NM_004235.4	409	Aag/Cag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438249	56438250	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0048987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	254	691	1	ENST00000407977.2:c.743dup	p.Tyr248Ter	p.Y248*	ENST00000407977		248	tac/taAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0048988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	160	340	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0048988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	122	283	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27102110	27102111	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0048988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	238	492	0	ENST00000324856.7:c.5036_5037del	p.Gly1679AlafsTer18	p.G1679Afs*18	ENST00000324856	NM_006015.4	1679	gGT/g																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066778	30066778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	214	424	0	ENST00000331968.5:c.2353G>A	p.Glu785Lys	p.E785K	ENST00000331968	NM_002742.2	785	Gaa/Aaa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46281161	46281161	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	171	437	0	ENST00000371998.3:c.3958C>A	p.Gln1320Lys	p.Q1320K	ENST00000371998		1320	Caa/Aaa																																																																															
EP300	2033	MSKCC	GRCh37	22	41545781	41545781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	192	424	0	ENST00000263253.7:c.2396C>T	p.Ser799Phe	p.S799F	ENST00000263253	NM_001429.3	799	tCt/tTt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37042458	37042458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	174	380	0	ENST00000231790.2:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000231790	NM_000249.3	74	Gat/Tat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125716	47125716	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	195	406	0	ENST00000409792.3:c.5554C>G	p.His1852Asp	p.H1852D	ENST00000409792	NM_014159.6	1852	Cat/Gat																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390146	89390146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	156	305	0	ENST00000336596.2:c.895G>A	p.Asp299Asn	p.D299N	ENST00000336596	NM_005233.5	299	Gat/Aat																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31401646	31401646	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	188	390	0	ENST00000344624.3:c.4018C>T	p.Gln1340Ter	p.Q1340*	ENST00000344624		1340	Cag/Tag																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522513	67522513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	18	182	0	ENST00000274335.5:c.10G>A	p.Glu4Lys	p.E4K	ENST00000274335		4	Gag/Aag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86633812	86633812	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	125	215	0	ENST00000274376.6:c.921C>G	p.Phe307Leu	p.F307L	ENST00000274376	NM_002890.2	307	ttC/ttG																																																																															
MGA	23269	MSKCC	GRCh37	15	42042344	42042344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	51	495	0	ENST00000219905.7:c.6539G>A	p.Gly2180Asp	p.G2180D	ENST00000219905	NM_001164273.1	2180	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0048992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	493	619	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612890	228612890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1731	335	717	1	ENST00000366696.1:c.137C>T	p.Thr46Met	p.T46M	ENST00000366696	NM_003493.2	46	aCg/aTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120479964	120479964	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	407	613	0	ENST00000256646.2:c.3463T>A	p.Ser1155Thr	p.S1155T	ENST00000256646	NM_024408.3	1155	Tcc/Acc																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504321	186504321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	116	195	0	ENST00000323963.5:c.658G>A	p.Asp220Asn	p.D220N	ENST00000323963		220	Gat/Aat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432447	49432447	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	58	629	0	ENST00000301067.7:c.8692C>T	p.Gln2898Ter	p.Q2898*	ENST00000301067	NM_003482.3	2898	Cag/Tag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15942871	15942895	+	frameshift_variant	Frame_Shift_Del	DEL	GTCATCAAAGCTTCCCATGAGAGCC	GTCATCAAAGCTTCCCATGAGAGCC	-			P-0048998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	40	444	0	ENST00000268712.3:c.6807_6831del	p.Ala2270LysfsTer15	p.A2270Kfs*15	ENST00000268712	NM_006311.3	2269	aaGGCTCTCATGGGAAGCTTTGATGAC/aa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229623	5229623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	10	118	0	ENST00000357368.4:c.2228C>T	p.Ser743Leu	p.S743L	ENST00000357368	NM_002850.3	743	tCg/tTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949629	151949629	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0048998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	15	307	0	ENST00000262189.6:c.1469+2T>G		p.X490_splice	ENST00000262189	NM_170606.2	490																																																																																
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0049000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	174	860	5	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0049000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	93	378	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480459	89480459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	47	392	0	ENST00000336596.2:c.2296G>A	p.Gly766Arg	p.G766R	ENST00000336596	NM_005233.5	766	Gga/Aga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247369	153247369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	54	297	0	ENST00000281708.4:c.1433C>T	p.Ser478Phe	p.S478F	ENST00000281708	NM_033632.3	478	tCt/tTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245521	153245521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	28	414	0	ENST00000281708.4:c.1670G>T	p.Gly557Val	p.G557V	ENST00000281708	NM_033632.3	557	gGa/gTa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482342	56482342	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	85	613	0	ENST00000267101.3:c.890A>T	p.Asp297Val	p.D297V	ENST00000267101	NM_001982.3	297	gAt/gTt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608032	28608033	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	76	488	0	ENST00000241453.7:c.1933dup	p.Met645AsnfsTer10	p.M645Nfs*10	ENST00000241453	NM_004119.2	645	atg/aAtg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38189088	38189088	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	56	488	0	ENST00000317025.8:c.926A>G	p.His309Arg	p.H309R	ENST00000317025	NM_023034.1	309	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0049001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	390	586	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0049001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	111	316	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129249	152129249	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771540162		P-0049001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	373	581	1	ENST00000206249.3:c.202G>A	p.Ala68Thr	p.A68T	ENST00000206249	NM_000125.3	68	Gcc/Acc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831993	72831993	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	318	570	0	ENST00000268489.5:c.4588G>C	p.Gly1530Arg	p.G1530R	ENST00000268489	NM_006885.3	1530	Ggt/Cgt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5265158	5265158	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	436	737	0	ENST00000357368.4:c.429G>C	p.Leu143Phe	p.L143F	ENST00000357368	NM_002850.3	143	ttG/ttC																																																																															
SOS1	6654	MSKCC	GRCh37	2	39250157	39250157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	291	621	0	ENST00000402219.2:c.1412G>A	p.Cys471Tyr	p.C471Y	ENST00000402219	NM_005633.3	471	tGt/tAt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484357	8484357	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	50	412	0	ENST00000356435.5:c.3175A>G	p.Met1059Val	p.M1059V	ENST00000356435		1059	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0049010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	171	618	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112111408	112111411	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0049010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	43	242	0	ENST00000257430.4:c.509_512del	p.Asp170ValfsTer4	p.D170Vfs*4	ENST00000257430	NM_000038.5	169	ATAGat/at																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508614	106508614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	96	422	0	ENST00000359195.3:c.608C>T	p.Thr203Met	p.T203M	ENST00000359195	NM_002649.2	203	aCg/aTg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724585	162724585	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	111	488	0	ENST00000367921.3:c.357G>T	p.Lys119Asn	p.K119N	ENST00000367921	NM_006182.2	119	aaG/aaT																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563123	21563123	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	434	636	2	ENST00000382592.4:c.796G>C	p.Gly266Arg	p.G266R	ENST00000382592	NM_014572.2	266	Ggc/Cgc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99460090	99460090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	27	333	0	ENST00000268035.6:c.2186C>A	p.Ser729Tyr	p.S729Y	ENST00000268035	NM_000875.3	729	tCc/tAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916247	9916247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	148	363	0	ENST00000330684.3:c.2042G>A	p.Arg681Gln	p.R681Q	ENST00000330684	NM_001134407.1	681	cGa/cAa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117641	70117641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	118	541	0	ENST00000245479.2:c.109T>C	p.Ser37Pro	p.S37P	ENST00000245479	NM_000346.3	37	Tcg/Ccg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597495	10597495	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0049010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	200	408	23	ENST00000171111.5:c.1709-1G>A		p.X570_splice	ENST00000171111	NM_203500.1	570																																																																																
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0049122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	156	351	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	108	533	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	84	181	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	125	437	0	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79950736	79950736	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs2405877		P-0049122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	21	96	2	ENST00000265081.6:c.190C>G	p.Pro64Ala	p.P64A	ENST00000265081	NM_002439.4	64	Cca/Gca																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50484151	50484151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	83	458	0	ENST00000394963.4:c.1001G>A	p.Arg334Gln	p.R334Q	ENST00000394963	NM_003076.4	334	cGg/cAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524552	187524552	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	219	563	0	ENST00000441802.2:c.11128C>T	p.Gln3710Ter	p.Q3710*	ENST00000441802	NM_005245.3	3710	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	147	493	0	ENST00000269305.4:c.537T>G	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caG																																																																															
ATR	545	MSKCC	GRCh37	3	142280234	142280234	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	137	348	0	ENST00000350721.4:c.1200G>C	p.Leu400Phe	p.L400F	ENST00000350721	NM_001184.3	400	ttG/ttC																																																																															
PAK1	5058	MSKCC	GRCh37	11	77064624	77064624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	90	447	0	ENST00000356341.3:c.793G>A	p.Asp265Asn	p.D265N	ENST00000356341	NM_002576.4	265	Gat/Aat																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436929	110436929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	78	274	0	ENST00000375856.3:c.1472C>T	p.Ser491Phe	p.S491F	ENST00000375856	NM_003749.2	491	tCc/tTc																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271219	26271219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	31	301	0	ENST00000305910.3:c.394C>T	p.Arg132Cys	p.R132C	ENST00000305910	NM_003534.2	132	Cgt/Tgt																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2489234	2489235	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	180	564	0	ENST00000355716.4:c.139_140insC	p.Tyr47SerfsTer30	p.Y47Sfs*30	ENST00000355716	NM_003820.2	47	tac/tCac																																																																															
CDC73	79577	MSKCC	GRCh37	1	193117024	193117024	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	48	351	0	ENST00000367435.3:c.757C>G	p.Leu253Val	p.L253V	ENST00000367435	NM_024529.4	253	Ctt/Gtt																																																																															
FANCC	2176	MSKCC	GRCh37	9	97879635	97879635	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	65	426	0	ENST00000289081.3:c.1034C>G	p.Ser345Cys	p.S345C	ENST00000289081	NM_000136.2	345	tCt/tGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419920	152419923	+	missense_variant	Missense_Mutation	ONP	TCTA	TCTA	CCTC			P-0048907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	45	457	0	ENST00000206249.3:c.1607_1610delinsCCTC	p.Leu536_Tyr537delinsProSer	p.L536_Y537delinsPS	ENST00000206249	NM_000125.3	536	cTCTAt/cCCTCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	297	449	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577123	7577123	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs876660333		P-0048908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	325	617	1	ENST00000269305.4:c.815T>A	p.Val272Glu	p.V272E	ENST00000269305	NM_001126112.2	272	gTg/gAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	269	554	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	343	337	0	ENST00000257430.4:c.4364delA	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943662	9943662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	285	527	2	ENST00000330684.3:c.1279G>A	p.Glu427Lys	p.E427K	ENST00000330684	NM_001134407.1	427	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685309	89685309	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	128	310	0	ENST00000371953.3:c.204C>A	p.Tyr68Ter	p.Y68*	ENST00000371953	NM_000314.4	68	taC/taA																																																																															
PGR	5241	MSKCC	GRCh37	11	100996816	100996816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	124	515	0	ENST00000325455.5:c.1711G>C	p.Gly571Arg	p.G571R	ENST00000325455	NM_001202474.3	571	Ggg/Cgg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212578374	212578374	+	splice_acceptor_variant	Splice_Site	DEL	C	C	-			P-0048908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	12	212	0	ENST00000342788.4:c.884-1del		p.X295_splice	ENST00000342788	NM_005235.2	295																																																																																
EP300	2033	MSKCC	GRCh37	22	41564516	41564517	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0048908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	272	455	2	ENST00000263253.7:c.3939_3940del	p.Asn1314SerfsTer3	p.N1314Sfs*3	ENST00000263253	NM_001429.3	1313	cAG/c																																																																															
APC	324	MSKCC	GRCh37	5	112175659	112175659	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	369	328	1	ENST00000257430.4:c.4368A>C	p.Lys1456Asn	p.K1456N	ENST00000257430	NM_000038.5	1456	aaA/aaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	80	413	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	69	326	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0048911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	102	333	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0048911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	112	411	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259497	89259497	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	106	420	0	ENST00000336596.2:c.641A>G	p.Asp214Gly	p.D214G	ENST00000336596	NM_005233.5	214	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	298	511	0	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	28	455	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	16	323	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207061	1207063	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	80	631	0	ENST00000326873.7:c.151_153del	p.Met51del	p.M51del	ENST00000326873	NM_000455.4	50	cTGAtg/ctg																																																																															
ATRX	546	MSKCC	GRCh37	X	76763976	76763976	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	51	626	1	ENST00000373344.5:c.7332G>T	p.Leu2444Phe	p.L2444F	ENST00000373344	NM_000489.3	2444	ttG/ttT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600446	10600446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	82	621	0	ENST00000171111.5:c.1409G>T	p.Arg470Leu	p.R470L	ENST00000171111	NM_203500.1	470	cGt/cTt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680046	30680046	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	49	561	0	ENST00000376406.3:c.1673delG	p.Gly558AspfsTer10	p.G558Dfs*10	ENST00000376406	NM_014641.2	558	gGa/ga																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794135	242794135	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	59	603	0	ENST00000334409.5:c.593G>A	p.Gly198Glu	p.G198E	ENST00000334409	NM_005018.2	198	gGg/gAg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115251208	115251208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	29	498	0	ENST00000369535.4:c.518G>T	p.Ser173Ile	p.S173I	ENST00000369535	NM_002524.4	173	aGc/aTc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100469	8100469	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	58	665	0	ENST00000346208.3:c.443C>G	p.Pro148Arg	p.P148R	ENST00000346208		148	cCg/cGg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482652	56482652	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	51	499	0	ENST00000267101.3:c.1109G>C	p.Gly370Ala	p.G370A	ENST00000267101	NM_001982.3	370	gGa/gCa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14038692	14038692	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	37	305	0	ENST00000311895.7:c.2017G>T	p.Gly673Cys	p.G673C	ENST00000311895	NM_005236.2	673	Ggt/Tgt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81891874	81891874	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	35	399	0	ENST00000359376.3:c.344C>G	p.Ser115Cys	p.S115C	ENST00000359376	NM_002661.3	115	tCt/tGt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39567820	39567820	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	17	330	0	ENST00000262039.4:c.576G>C	p.Trp192Cys	p.W192C	ENST00000262039	NM_002647.2	192	tgG/tgC																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2220122	2220122	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	56	552	0	ENST00000398665.3:c.2709del	p.Val904CysfsTer164	p.V904Cfs*164	ENST00000398665	NM_032482.2	903	Ccc/cc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129845	55129845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	34	429	0	ENST00000257290.5:c.379G>T	p.Ala127Ser	p.A127S	ENST00000257290	NM_006206.4	127	Gcc/Tcc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217156	66217156	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	38	487	0	ENST00000273854.3:c.2459G>T	p.Gly820Val	p.G820V	ENST00000273854	NM_004439.5	820	gGa/gTa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026530	6026530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	57	673	0	ENST00000265849.7:c.1866G>T	p.Met622Ile	p.M622I	ENST00000265849	NM_000535.5	622	atG/atT																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444399	50444399	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	32	427	0	ENST00000331340.3:c.329T>A	p.Ile110Asn	p.I110N	ENST00000331340	NM_006060.4	110	aTt/aAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55086992	55086992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	37	356	0	ENST00000275493.2:c.22G>A	p.Gly8Arg	p.G8R	ENST00000275493	NM_005228.3	8	Ggg/Agg																																																																															
SYK	6850	MSKCC	GRCh37	9	93639953	93639953	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	32	355	0	ENST00000375746.1:c.1282G>T	p.Asp428Tyr	p.D428Y	ENST00000375746	NM_001174167.1	428	Gac/Tac																																																																															
MED12	9968	MSKCC	GRCh37	X	70349673	70349673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	44	561	0	ENST00000374080.3:c.3835G>T	p.Ala1279Ser	p.A1279S	ENST00000374080		1279	Gcc/Tcc																																																																															
BTK	695	MSKCC	GRCh37	X	100608315	100608315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	39	574	0	ENST00000308731.7:c.1775C>A	p.Ser592Tyr	p.S592Y	ENST00000308731	NM_000061.2	592	tCc/tAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47035983	47035985	+	missense_variant,splice_region_variant	Missense_Mutation	ONP	AAG	AAG	CAT			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	62	641	0	ENST00000329236.7:c.430_432delinsCAT	p.Lys144His	p.K144H	ENST00000329236	NM_001204466.1	144	AAG/CAT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	85	429	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
KIT	3815	MSKCC	GRCh37	4	55593413	55593413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	35	273	0	ENST00000288135.5:c.1570C>T	p.Pro524Ser	p.P524S	ENST00000288135	NM_000222.2	524	Cct/Tct																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399444	139399444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	90	566	0	ENST00000277541.6:c.4699G>A	p.Glu1567Lys	p.E1567K	ENST00000277541	NM_017617.3	1567	Gag/Aag																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149503914	149503914	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56339845		P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	81	490	4	ENST00000261799.4:c.1922G>A	p.Arg641His	p.R641H	ENST00000261799	NM_002609.3	641	cGc/cAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602918	10602918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	112	467	0	ENST00000171111.5:c.660C>G	p.Phe220Leu	p.F220L	ENST00000171111	NM_203500.1	220	ttC/ttG																																																																															
STK11	6794	MSKCC	GRCh37	19	1207197	1207198	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	93	461	0	ENST00000326873.7:c.286_287dup	p.Lys97ArgfsTer7	p.K97Rfs*7	ENST00000326873	NM_000455.4	95	-/AA																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026998	48026998	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	57	329	1	ENST00000234420.5:c.1876C>T	p.Gln626Ter	p.Q626*	ENST00000234420	NM_000179.2	626	Cag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306733	41306733	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	91	449	0	ENST00000373198.4:c.926C>G	p.Pro309Arg	p.P309R	ENST00000373198	NM_133170.3	309	cCa/cGa																																																																															
NF2	4771	MSKCC	GRCh37	22	30067863	30067863	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	45	351	0	ENST00000338641.4:c.1048G>T	p.Glu350Ter	p.E350*	ENST00000338641	NM_000268.3	350	Gaa/Taa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149505011	149505011	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	56	279	0	ENST00000261799.4:c.1804C>A	p.Leu602Met	p.L602M	ENST00000261799	NM_002609.3	602	Ctg/Atg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729266	41729266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	38	262	0	ENST00000242208.4:c.1263G>T	p.Glu421Asp	p.E421D	ENST00000242208	NM_002192.2	421	gaG/gaT																																																																															
NBN	4683	MSKCC	GRCh37	8	90990552	90990552	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	44	214	0	ENST00000265433.3:c.481-1G>A		p.X161_splice	ENST00000265433	NM_002485.4	161																																																																																
TGFBR1	7046	MSKCC	GRCh37	9	101894941	101894941	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	46	273	0	ENST00000374994.4:c.494C>A	p.Ser165Ter	p.S165*	ENST00000374994	NM_004612.2	165	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	238	480	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175456	112175457	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0048970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	133	237	0	ENST00000257430.4:c.4166_4167del	p.Ser1389CysfsTer5	p.S1389Cfs*5	ENST00000257430	NM_000038.5	1389	TCt/t																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89176365	89176365	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	38	201	0	ENST00000336596.2:c.95T>C	p.Leu32Pro	p.L32P	ENST00000336596	NM_005233.5	32	cTa/cCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			399	55	300	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087503	27087503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			692	51	592	1	ENST00000324856.7:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000324856	NM_006015.4	693	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857125	9857125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			307	44	246	0	ENST00000330684.3:c.4276G>A	p.Glu1426Lys	p.E1426K	ENST00000330684	NM_001134407.1	1426	Gag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108201099	108201099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			301	33	275	0	ENST00000278616.4:c.7466C>A	p.Ser2489Tyr	p.S2489Y	ENST00000278616	NM_000051.3	2489	tCc/tAc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155870187	155870187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			441	58	348	0	ENST00000368323.3:c.652G>A	p.Val218Ile	p.V218I	ENST00000368323	NM_006912.5	218	Gta/Ata																																																																															
MGA	23269	MSKCC	GRCh37	15	42041905	42041905	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	66	379	0	ENST00000219905.7:c.6100G>T	p.Glu2034Ter	p.E2034*	ENST00000219905	NM_001164273.1	2034	Gaa/Taa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576234	88576234	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			445	71	452	0	ENST00000360948.2:c.1439C>A	p.Pro480Gln	p.P480Q	ENST00000360948	NM_001012338.2	480	cCa/cAa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99459927	99459927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	56	295	0	ENST00000268035.6:c.2023G>T	p.Asp675Tyr	p.D675Y	ENST00000268035	NM_000875.3	675	Gac/Tac																																																																															
YES1	7525	MSKCC	GRCh37	18	745967	745967	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			391	44	330	0	ENST00000314574.4:c.555A>T	p.Arg185Ser	p.R185S	ENST00000314574	NM_005433.3	185	agA/agT																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716037	52716037	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			708	100	586	0	ENST00000322088.6:c.602T>C	p.Val201Ala	p.V201A	ENST00000322088	NM_014225.5	201	gTc/gCc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89156983	89156983	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			421	44	356	0	ENST00000336596.2:c.85G>T	p.Glu29Ter	p.E29*	ENST00000336596	NM_005233.5	29	Gaa/Taa																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664849	138664849	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	35	137	0	ENST00000330315.3:c.716C>A	p.Pro239His	p.P239H	ENST00000330315	NM_023067.3	239	cCt/cAt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509999	106509999	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	47	362	0	ENST00000359195.3:c.1993C>A	p.Gln665Lys	p.Q665K	ENST00000359195	NM_002649.2	665	Cag/Aag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223881	53223881	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			790	86	662	0	ENST00000375401.3:c.3478G>T	p.Gly1160Cys	p.G1160C	ENST00000375401	NM_004187.3	1160	Ggt/Tgt																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123480500	123480500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	26	407	0	ENST00000371139.4:c.8C>T	p.Ala3Val	p.A3V	ENST00000371139	NM_001114937.2	3	gCa/gTa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509006	106509006	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201525740		P-0048803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	114	398	1	ENST00000359195.3:c.1000G>A	p.Gly334Ser	p.G334S	ENST00000359195	NM_002649.2	334	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579590	7579591	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CT			P-0048803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	75	454	0	ENST00000269305.4:c.97-2_97-1dupAG	p.Leu35ProfsTer10	p.L35Pfs*10	ENST00000269305	NM_001126112.2	32	-/AG																																																																															
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	93	183	0	ENST00000257430.4:c.3944C>G	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tGa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18719992	18719992	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0048803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	11	185	0	ENST00000266497.5:c.3888+1G>A		p.X1296_splice	ENST00000266497		1296																																																																																
CIC	23152	MSKCC	GRCh37	19	42791997	42791997	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	105	577	0	ENST00000575354.2:c.801G>A	p.Trp267Ter	p.W267*	ENST00000575354	NM_015125.3	267	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	474	520	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145362	58145362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	111	404	0	ENST00000257904.6:c.139G>A	p.Gly47Arg	p.G47R	ENST00000257904	NM_000075.3	47	Gga/Aga																																																																															
TET2	54790	MSKCC	GRCh37	4	106193786	106193786	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	55	209	0	ENST00000380013.4:c.4248C>G	p.His1416Gln	p.H1416Q	ENST00000380013	NM_001127208.2	1416	caC/caG																																																																															
BRAF	673	MSKCC	GRCh37	7	140476872	140476872	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	57	286	0	ENST00000288602.6:c.1534A>G	p.Asn512Asp	p.N512D	ENST00000288602	NM_004333.4	512	Aat/Gat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	291	268	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0048811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	526	361	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0048811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	604	453	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518458	69518458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	365	250	0	ENST00000294312.3:c.187C>T	p.Arg63Cys	p.R63C	ENST00000294312	NM_005117.2	63	Cgt/Tgt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942515	17942515	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149452625		P-0048811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	714	670	0	ENST00000458235.1:c.2773C>T	p.Arg925Cys	p.R925C	ENST00000458235	NM_000215.3	925	Cgc/Tgc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487288	56487288	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	189	317	0	ENST00000267101.3:c.1435del	p.Glu479LysfsTer4	p.E479Kfs*4	ENST00000267101	NM_001982.3	478	acG/ac																																																																															
CDH1	999	MSKCC	GRCh37	16	68857460	68857460	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	165	440	0	ENST00000261769.5:c.2095C>T	p.Gln699Ter	p.Q699*	ENST00000261769	NM_004360.3	699	Cag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112602	115112602	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	262	647	1	ENST00000257566.3:c.1138G>T	p.Glu380Ter	p.E380*	ENST00000257566	NM_016569.3	380	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	664	419	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	392	722	0	ENST00000269305.4:c.823T>C	p.Cys275Arg	p.C275R	ENST00000269305	NM_001126112.2	275	Tgt/Cgt																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80336402	80336402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	112	417	0	ENST00000286548.4:c.917G>A	p.Arg306Gln	p.R306Q	ENST00000286548	NM_002072.3	306	cGa/cAa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138375052	138375052	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	216	443	0	ENST00000289153.2:c.3007C>G	p.Leu1003Val	p.L1003V	ENST00000289153	NM_006219.2	1003	Ctc/Gtc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662700	117662700	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	92	405	1	ENST00000368508.3:c.4765G>T	p.Glu1589Ter	p.E1589*	ENST00000368508	NM_002944.2	1589	Gaa/Taa																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966664	36966664	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142210825		P-0048813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	132	533	0	ENST00000358127.4:c.662G>A	p.Arg221Gln	p.R221Q	ENST00000358127	NM_001280556.1	221	cGg/cAg																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56774218	56774218	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0048813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	20	297	1	ENST00000337432.4:c.569A>G	p.Glu190Gly	p.E190G	ENST00000337432	NM_058216.2	190	gAg/gGg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123310911	123310911	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	268	498	0	ENST00000358487.5:c.517A>G	p.Asn173Asp	p.N173D	ENST00000358487	NM_000141.4	173	Aac/Gac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11169561	11169561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	274	606	0	ENST00000344626.4:c.4633del	p.Leu1545Ter	p.L1545*	ENST00000344626	NM_003072.3	1544	tCc/tc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198257071	198257071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	173	376	0	ENST00000335508.6:c.3871G>T	p.Asp1291Tyr	p.D1291Y	ENST00000335508	NM_012433.2	1291	Gat/Tat																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89444995	89444996	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0048813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	390	348	1	ENST00000336596.2:c.1315_1316delinsTA	p.Pro439Tyr	p.P439Y	ENST00000336596	NM_005233.5	439	CCt/TAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541658	187541658	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	50	356	0	ENST00000441802.2:c.6082A>T	p.Thr2028Ser	p.T2028S	ENST00000441802	NM_005245.3	2028	Act/Tct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	640	545	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0048821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	138	600	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060886	38060886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	118	678	0	ENST00000250448.2:c.1103C>T	p.Ala368Val	p.A368V	ENST00000250448	NM_004496.3	368	gCc/gTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56170876	56170877	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	47	298	0	ENST00000399503.3:c.1704_1705insA	p.Val569SerfsTer7	p.V569Sfs*7	ENST00000399503	NM_005921.1	568	-/A																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0048888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	28	520	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0048888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	59	511	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
SDHC	6391	MSKCC	GRCh37	1	161298222	161298222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	15	364	0	ENST00000367975.2:c.114G>A	p.Met38Ile	p.M38I	ENST00000367975	NM_003001.3	38	atG/atA																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804343	46804343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	46	544	0	ENST00000290295.7:c.664C>A	p.Pro222Thr	p.P222T	ENST00000290295	NM_006361.5	222	Ccg/Acg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151880138	151880138	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	16	420	0	ENST00000262189.6:c.5186C>G	p.Ser1729Cys	p.S1729C	ENST00000262189	NM_170606.2	1729	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1131691025		P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	76	456	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127399	55127399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	179	568	0	ENST00000257290.5:c.187G>A	p.Glu63Lys	p.E63K	ENST00000257290	NM_006206.4	63	Gaa/Aaa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873118	134873118	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	59	482	1	ENST00000398015.3:c.1422G>T	p.Lys474Asn	p.K474N	ENST00000398015	NM_004441.4	474	aaG/aaT																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112884199	112884199	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	67	524	0	ENST00000351677.2:c.134T>G	p.Val45Gly	p.V45G	ENST00000351677	NM_002834.3	45	gTt/gGt																																																																															
ACVR1	90	MSKCC	GRCh37	2	158634702	158634702	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	68	341	0	ENST00000263640.3:c.484G>T	p.Val162Leu	p.V162L	ENST00000263640	NM_001105.4	162	Gtg/Ttg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57474001	57474001	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	41	359	0	ENST00000371085.3:c.218G>T	p.Gly73Val	p.G73V	ENST00000371085	NM_000516.4	73	gGc/gTc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29092905	29092905	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	57	513	0	ENST00000328354.6:c.1079A>T	p.Glu360Val	p.E360V	ENST00000328354	NM_007194.3	360	gAg/gTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201698	66201698	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	71	506	0	ENST00000273854.3:c.2804T>A	p.Leu935Gln	p.L935Q	ENST00000273854	NM_004439.5	935	cTg/cAg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026972	6026972	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	74	254	0	ENST00000265849.7:c.1424T>G	p.Val475Gly	p.V475G	ENST00000265849	NM_000535.5	475	gTg/gGg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468125	50468125	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	62	501	0	ENST00000331340.3:c.1360A>T	p.Thr454Ser	p.T454S	ENST00000331340	NM_006060.4	454	Acc/Tcc																																																																															
SMO	6608	MSKCC	GRCh37	7	128851964	128851964	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	61	634	0	ENST00000249373.3:c.2036A>G	p.Lys679Arg	p.K679R	ENST00000249373	NM_005631.4	679	aAg/aGg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934382	39934382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	85	346	0	ENST00000378444.4:c.217G>A	p.Asp73Asn	p.D73N	ENST00000378444	NM_001123385.1	73	Gac/Aac																																																																															
BTK	695	MSKCC	GRCh37	X	100630136	100630136	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	56	301	0	ENST00000308731.7:c.137G>T	p.Arg46Leu	p.R46L	ENST00000308731	NM_000061.2	46	cGt/cTt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123184046	123184046	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	26	239	0	ENST00000218089.9:c.904G>C	p.Ala302Pro	p.A302P	ENST00000218089	NM_001042749.1	302	Gct/Cct																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0048892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	147	350	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220116	5220116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	206	592	1	ENST00000357368.4:c.3599G>A	p.Arg1200His	p.R1200H	ENST00000357368	NM_002850.3	1200	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0048892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	249	585	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
MTOR	2475	MSKCC	GRCh37	1	11193214	11193214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	122	606	0	ENST00000361445.4:c.5287G>T	p.Gly1763Cys	p.G1763C	ENST00000361445	NM_004958.3	1763	Ggc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106803	27106804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	104	611	0	ENST00000324856.7:c.6420dup	p.Phe2141LeufsTer9	p.F2141Lfs*9	ENST00000324856	NM_006015.4	2138	-/C																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599271	28599271	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1457528646		P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	114	630	2	ENST00000253063.3:c.722del	p.Pro241GlnfsTer6	p.P241Qfs*6	ENST00000253063	NM_031459.4	239	agC/ag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	87	328	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65310468	65310468	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	41	457	0	ENST00000342505.4:c.2220delC	p.Gly741AlafsTer30	p.G741Afs*30	ENST00000342505	NM_002227.2	740	ccC/cc																																																																															
TET1	80312	MSKCC	GRCh37	10	70404571	70404578	+	frameshift_variant	Frame_Shift_Del	DEL	AACTAAAA	AACTAAAA	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	105	462	1	ENST00000373644.4:c.2086_2093del	p.Thr696Ter	p.T696*	ENST00000373644	NM_030625.2	695	gtAACTAAAAat/gtat																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	63	331	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94911953	94911953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	123	556	1	ENST00000536441.1:c.977G>A	p.Arg326Gln	p.R326Q	ENST00000536441	NM_144665.3	326	cGa/cAa																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981861	101981863	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	89	553	1	ENST00000282441.5:c.286_288del	p.Phe96del	p.F96del	ENST00000282441	NM_001130145.2	94	tcCTTc/tcc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118352594	118352594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376303494		P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	98	468	0	ENST00000534358.1:c.3799G>A	p.Val1267Ile	p.V1267I	ENST00000534358	NM_005933.3	1267	Gtc/Atc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445375	49445375	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	151	729	2	ENST00000301067.7:c.2091del	p.Thr698HisfsTer232	p.T698Hfs*232	ENST00000301067	NM_003482.3	697	ccC/cc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860074	57860075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	125	659	0	ENST00000228682.2:c.821dupG	p.Cys275LeufsTer32	p.C275Lfs*32	ENST00000228682	NM_005269.2	272	tgg/tGgg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115398	115115398	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	99	529	0	ENST00000257566.3:c.928C>T	p.Arg310Ter	p.R310*	ENST00000257566	NM_016569.3	310	Cga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117410	115117410	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	43	389	0	ENST00000257566.3:c.764T>A	p.Val255Glu	p.V255E	ENST00000257566	NM_016569.3	255	gTa/gAa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103506135	103506135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	67	299	1	ENST00000355739.4:c.293C>T	p.Ala98Val	p.A98V	ENST00000355739	NM_000123.3	98	gCg/gTg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246532	105246532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	146	567	0	ENST00000349310.3:c.68G>A	p.Arg23Gln	p.R23Q	ENST00000349310	NM_001014432.1	23	cGg/cAg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479831	67479831	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	109	511	1	ENST00000327367.4:c.1138T>C	p.Trp380Arg	p.W380R	ENST00000327367	NM_005902.3	380	Tgg/Cgg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	135	710	1	ENST00000294008.3:c.1406delC	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993846	72993846	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	99	470	0	ENST00000268489.5:c.199T>C	p.Ser67Pro	p.S67P	ENST00000268489	NM_006885.3	67	Tcg/Ccg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346534	89346534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	125	561	0	ENST00000301030.4:c.6416C>T	p.Pro2139Leu	p.P2139L	ENST00000301030	NM_001256183.1	2139	cCg/cTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348152	89348152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	137	719	3	ENST00000301030.4:c.4798C>T	p.Arg1600Trp	p.R1600W	ENST00000301030	NM_001256183.1	1600	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7572991	7572991	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	98	397	0	ENST00000269305.4:c.1118delA	p.Lys373ArgfsTer49	p.K373Rfs*49	ENST00000269305	NM_001126112.2	373	aAg/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	140	616	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	131	570	2	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																																																															
RARA	5914	MSKCC	GRCh37	17	38510560	38510560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	92	368	2	ENST00000254066.5:c.814C>T	p.Arg272Trp	p.R272W	ENST00000254066	NM_000964.3	272	Cgg/Tgg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	144	564	1	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78866607	78866607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	134	551	0	ENST00000306801.3:c.2180G>A	p.Arg727His	p.R727H	ENST00000306801	NM_020761.2	727	cGt/cAt																																																																															
STK11	6794	MSKCC	GRCh37	19	1226558	1226558	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	99	475	2	ENST00000326873.7:c.1214G>T	p.Arg405Met	p.R405M	ENST00000326873	NM_000455.4	405	aGg/aTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245898	5245898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	115	713	2	ENST00000357368.4:c.877G>A	p.Val293Met	p.V293M	ENST00000357368	NM_002850.3	293	Gtg/Atg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291084	10291084	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	122	635	1	ENST00000340748.4:c.387del	p.Lys130AsnfsTer129	p.K130Nfs*129	ENST00000340748		129	ccC/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223481	36223481	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	147	691	1	ENST00000222270.7:c.6034del	p.Ala2012ProfsTer28	p.A2012Pfs*28	ENST00000222270	NM_014727.1	2011	Ggg/gg																																																																															
CASP8	841	MSKCC	GRCh37	2	202136304	202136304	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	112	483	0	ENST00000358485.4:c.548T>C	p.Leu183Ser	p.L183S	ENST00000358485	NM_001080125.1	183	tTg/tCg																																																																															
BARD1	580	MSKCC	GRCh37	2	215646085	215646085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	126	505	1	ENST00000260947.4:c.513del	p.Asp172MetfsTer40	p.D172Mfs*40	ENST00000260947	NM_000465.2	171	aaA/aa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944562	40944562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	89	418	0	ENST00000373198.4:c.1940C>T	p.Ser647Leu	p.S647L	ENST00000373198	NM_133170.3	647	tCg/tTg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484840	57484840	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	116	562	0	ENST00000371085.3:c.820A>G	p.Lys274Glu	p.K274E	ENST00000371085	NM_000516.4	274	Aag/Gag																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62324609	62324609	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139221232		P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	124	524	2	ENST00000508582.2:c.3037C>T	p.Arg1013Trp	p.R1013W	ENST00000508582		1013	Cgg/Tgg																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288246	21288246	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200712124		P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	146	627	0	ENST00000354336.3:c.491G>A	p.Arg164Gln	p.R164Q	ENST00000354336	NM_005207.3	164	cGg/cAg																																																																															
MITF	4286	MSKCC	GRCh37	3	69998221	69998221	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	75	408	0	ENST00000352241.4:c.782T>C	p.Leu261Ser	p.L261S	ENST00000352241	NM_198159.2	261	tTg/tCg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185190831	185190831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	112	627	0	ENST00000265026.3:c.1712G>A	p.Gly571Glu	p.G571E	ENST00000265026	NM_004721.4	571	gGa/gAa																																																																															
KIT	3815	MSKCC	GRCh37	4	55604658	55604658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	116	444	0	ENST00000288135.5:c.2866C>T	p.Arg956Trp	p.R956W	ENST00000288135	NM_000222.2	956	Cgg/Tgg																																																																															
KDR	3791	MSKCC	GRCh37	4	55973916	55973916	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	79	447	0	ENST00000263923.4:c.1400C>A	p.Ala467Asp	p.A467D	ENST00000263923	NM_002253.2	467	gCc/gAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258980	153258980	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	55	314	0	ENST00000281708.4:c.835G>T	p.Asp279Tyr	p.D279Y	ENST00000281708	NM_033632.3	279	Gac/Tac																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	188	545	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564667	86564667	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	119	572	0	ENST00000274376.6:c.402del	p.Pro136LeufsTer38	p.P136Lfs*38	ENST00000274376	NM_002890.2	133	ggT/gg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562993	176562993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	88	382	0	ENST00000439151.2:c.889G>A	p.Gly297Arg	p.G297R	ENST00000439151	NM_022455.4	297	Gga/Aga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638531	176638531	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	121	596	1	ENST00000439151.2:c.3131A>G	p.Asn1044Ser	p.N1044S	ENST00000439151	NM_022455.4	1044	aAc/aGc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180038480	180038480	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	77	502	0	ENST00000261937.6:c.3538-1G>A		p.X1180_splice	ENST00000261937	NM_182925.4	1180																																																																																
E2F3	1871	MSKCC	GRCh37	6	20402614	20402614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	27	238	0	ENST00000346618.3:c.151G>A	p.Ala51Thr	p.A51T	ENST00000346618	NM_001949.4	51	Gcc/Acc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170313	32170313	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201260854		P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	131	667	0	ENST00000375023.3:c.3295G>A	p.Gly1099Arg	p.G1099R	ENST00000375023	NM_004557.3	1099	Gga/Aga																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	121	632	1	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2951871	2951871	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	138	594	0	ENST00000396946.4:c.3079C>T	p.Arg1027Ter	p.R1027*	ENST00000396946	NM_032415.4	1027	Cga/Tga																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729730	41729730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	85	501	1	ENST00000242208.4:c.799G>T	p.Gly267Trp	p.G267W	ENST00000242208	NM_002192.2	267	Ggg/Tgg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509606	106509606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	88	519	0	ENST00000359195.3:c.1600C>T	p.Pro534Ser	p.P534S	ENST00000359195	NM_002649.2	534	Ccc/Tcc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187222	38187222	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1297	111	682	0	ENST00000317025.8:c.1255del	p.Thr419ProfsTer8	p.T419Pfs*8	ENST00000317025	NM_023034.1	419	Acc/cc																																																																															
LYN	4067	MSKCC	GRCh37	8	56859006	56859006	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	94	448	0	ENST00000519728.1:c.133-1G>T		p.X45_splice	ENST00000519728	NM_002350.3	45																																																																																
LYN	4067	MSKCC	GRCh37	8	56910950	56910950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	119	536	1	ENST00000519728.1:c.1096C>T	p.Arg366Trp	p.R366W	ENST00000519728	NM_002350.3	366	Cgg/Tgg																																																																															
MYC	4609	MSKCC	GRCh37	8	128750639	128750639	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775522201		P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	109	519	0	ENST00000377970.2:c.176C>T	p.Ala59Val	p.A59V	ENST00000377970	NM_002467.4	59	gCg/gTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970951	21970951	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	107	469	1	ENST00000304494.5:c.407del	p.Gly136AlafsTer10	p.G136Afs*10	ENST00000304494	NM_000077.4	136	gGc/gc																																																																															
SYK	6850	MSKCC	GRCh37	9	93606278	93606278	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	139	594	0	ENST00000375746.1:c.98G>T	p.Gly33Val	p.G33V	ENST00000375746	NM_001174167.1	33	gGc/gTc																																																																															
ABL1	25	MSKCC	GRCh37	9	133759623	133759623	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	125	566	0	ENST00000318560.5:c.1950del	p.Leu651TrpfsTer43	p.L651Wfs*43	ENST00000318560	NM_005157.4	649	aCc/ac																																																																															
ABL1	25	MSKCC	GRCh37	9	133759697	133759697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	114	534	0	ENST00000318560.5:c.2020C>T	p.Arg674Trp	p.R674W	ENST00000318560	NM_005157.4	674	Cgg/Tgg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923086	39923087	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	53	645	0	ENST00000378444.4:c.3621dup	p.Gln1208ThrfsTer8	p.Q1208Tfs*8	ENST00000378444	NM_001123385.1	1207	-/A																																																																															
ARAF	369	MSKCC	GRCh37	X	47430809	47430809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	55	551	2	ENST00000377045.4:c.1774G>A	p.Asp592Asn	p.D592N	ENST00000377045	NM_001654.4	592	Gat/Aat																																																																															
BTK	695	MSKCC	GRCh37	X	100608266	100608266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	72	640	0	ENST00000308731.7:c.1824A>T	p.Glu608Asp	p.E608D	ENST00000308731	NM_000061.2	608	gaA/gaT																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910372	29910372	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	137	635	0	ENST00000376809.5:c.46delG	p.Ala16ProfsTer4	p.A16Pfs*4	ENST00000376809	NM_002116.7	14	tcG/tc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149499073	149499073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1686	243	623	0	ENST00000261799.4:c.2755C>T	p.Arg919Trp	p.R919W	ENST00000261799	NM_002609.3	919	Cgg/Tgg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115948	8115949	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	302	384	0	ENST00000346208.3:c.1294_1295insA	p.Pro432HisfsTer75	p.P432Hfs*75	ENST00000346208		432	cca/cAca																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186503817	186503818	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	321	468	0	ENST00000323963.5:c.495dup	p.Met166TyrfsTer19	p.M166Yfs*19	ENST00000323963		165	gat/gaTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	30	669	0	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180039600	180039600	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	40	633	0	ENST00000261937.6:c.3443T>C	p.Met1148Thr	p.M1148T	ENST00000261937	NM_182925.4	1148	aTg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0048834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	30	425	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	223	354	0	ENST00000269305.4:c.532C>G	p.His178Asp	p.H178D	ENST00000269305	NM_001126112.2	178	Cac/Gac																																																																															
INHA	3623	MSKCC	GRCh37	2	220440019	220440019	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	396	398	0	ENST00000243786.2:c.872G>C	p.Cys291Ser	p.C291S	ENST00000243786	NM_002191.3	291	tGt/tCt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138456683	138456683	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	47	187	0	ENST00000289153.2:c.667G>C	p.Val223Leu	p.V223L	ENST00000289153	NM_006219.2	223	Gta/Cta																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0048837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	1063	328	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																															
CDH1	999	MSKCC	GRCh37	16	68856020	68856020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	158	412	1	ENST00000261769.5:c.1828C>T	p.Gln610Ter	p.Q610*	ENST00000261769	NM_004360.3	610	Cag/Tag																																																																															
ALK	238	MSKCC	GRCh37	2	29754827	29754827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	155	420	0	ENST00000389048.3:c.1108G>A	p.Glu370Lys	p.E370K	ENST00000389048	NM_004304.4	370	Gag/Aag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120764	115120765	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	235	503	0	ENST00000257566.3:c.241dup	p.Leu81ProfsTer30	p.L81Pfs*30	ENST00000257566	NM_016569.3	81	ctg/cCtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0048842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	84	313	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946174	13946174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	81	366	0	ENST00000405192.2:c.922C>T	p.Arg308Trp	p.R308W	ENST00000405192	NM_001163147.1	308	Cgg/Tgg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484218	8484218	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	83	425	0	ENST00000356435.5:c.3314C>A	p.Pro1105Gln	p.P1105Q	ENST00000356435		1105	cCa/cAa																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643297	38643298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0048842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	61	315	0	ENST00000299084.4:c.768_769dup	p.Arg257LeufsTer47	p.R257Lfs*47	ENST00000299084	NM_152594.2	256	cgt/cgTCt																																																																															
ATRX	546	MSKCC	GRCh37	X	76937641	76937641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	38	178	0	ENST00000373344.5:c.3107A>G	p.Lys1036Arg	p.K1036R	ENST00000373344	NM_000489.3	1036	aAg/aGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0048847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	188	483	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0048847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	58	194	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100196	27100196	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	58	403	0	ENST00000324856.7:c.3992del	p.Gln1331ArgfsTer150	p.Q1331Rfs*150	ENST00000324856	NM_006015.4	1331	cAg/cg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048632	180048632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	236	756	2	ENST00000261937.6:c.1930G>A	p.Ala644Thr	p.A644T	ENST00000261937	NM_182925.4	644	Gcg/Acg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630491	47630491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	283	694	0	ENST00000233146.2:c.161C>T	p.Ala54Val	p.A54V	ENST00000233146	NM_000251.2	54	gCc/gTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	105	165	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	374	358	0	ENST00000269305.4:c.773A>G	p.Glu258Gly	p.E258G	ENST00000269305	NM_001126112.2	258	gAa/gGa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736334	243736334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	178	189	0	ENST00000263826.5:c.713C>T	p.Ser238Leu	p.S238L	ENST00000263826	NM_005465.4	238	tCg/tTg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741406	17741406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	276	566	2	ENST00000250003.3:c.77C>T	p.Thr26Met	p.T26M	ENST00000250003	NM_002478.4	26	aCg/aTg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223211	2223211	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1271	256	491	0	ENST00000326181.6:c.823T>C	p.Tyr275His	p.Y275H	ENST00000326181	NM_032271.2	275	Tac/Cac																																																																															
CDH1	999	MSKCC	GRCh37	16	68845640	68845641	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0048849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	403	373	0	ENST00000261769.5:c.887dup	p.Tyr296Ter	p.Y296*	ENST00000261769	NM_004360.3	296	tac/tAac																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661669	227661669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	183	401	0	ENST00000305123.5:c.1786G>T	p.Gly596Trp	p.G596W	ENST00000305123	NM_005544.2	596	Ggg/Tgg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266071	41266097	+	inframe_deletion	In_Frame_Del	DEL	GTCACTGGCAGCAACAGTCTTACCTGG	GTCACTGGCAGCAACAGTCTTACCTGG	-			P-0048849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	144	128	0	ENST00000349496.5:c.68_94del	p.Ser23_Asp32delinsAsn	p.S23_D32delinsN	ENST00000349496	NM_001904.3	23	aGTCACTGGCAGCAACAGTCTTACCTGGac/aac																																																																															
KIT	3815	MSKCC	GRCh37	4	55602691	55602691	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	52	163	0	ENST00000288135.5:c.2512C>A	p.Pro838Thr	p.P838T	ENST00000288135	NM_000222.2	838	Cct/Act																																																																															
IRF4	3662	MSKCC	GRCh37	6	397175	397175	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	100	263	0	ENST00000380956.4:c.560A>G	p.His187Arg	p.H187R	ENST00000380956	NM_001195286.1	187	cAc/cGc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735466	40735466	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182388300		P-0048850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	129	524	0	ENST00000373198.4:c.3407G>A	p.Arg1136His	p.R1136H	ENST00000373198	NM_133170.3	1136	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	48	137	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0048850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	185	438	0	ENST00000269305.4:c.672+1G>C		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
CXCR4	7852	MSKCC	GRCh37	2	136872935	136872935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	116	311	0	ENST00000241393.3:c.563G>A	p.Arg188His	p.R188H	ENST00000241393	NM_003467.2	188	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112170676	112170676	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	96	257	0	ENST00000257430.4:c.1773del	p.Leu592TyrfsTer18	p.L592Yfs*18	ENST00000257430	NM_000038.5	591	gCc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0048702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	399	564	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244586	46244586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	207	479	0	ENST00000334344.6:c.2680C>T	p.Gln894Ter	p.Q894*	ENST00000334344	NM_152641.2	894	Cag/Tag																																																																															
TET1	80312	MSKCC	GRCh37	10	70360756	70360756	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	33	229	0	ENST00000373644.4:c.1933A>G	p.Arg645Gly	p.R645G	ENST00000373644	NM_030625.2	645	Agg/Ggg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231780	36231780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	151	532	1	ENST00000300305.3:c.604G>A	p.Glu202Lys	p.E202K	ENST00000300305		202	Gaa/Aaa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231782	36231782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	8	596	1	ENST00000300305.3:c.602G>A	p.Arg201Gln	p.R201Q	ENST00000300305		201	cGa/cAa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347873	347873	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199666954		P-0048710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	10	827	0	ENST00000262320.3:c.1633C>T	p.Arg545Trp	p.R545W	ENST00000262320	NM_003502.3	545	Cgg/Tgg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639690	3639690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	11	832	0	ENST00000294008.3:c.3949C>T	p.Pro1317Ser	p.P1317S	ENST00000294008	NM_032444.2	1317	Ccg/Tcg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179448	56179454	+	frameshift_variant	Frame_Shift_Del	DEL	TTTCTTC	TTTCTTC	-			P-0048710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	16	275	0	ENST00000399503.3:c.3763_3769del	p.Ser1255ValfsTer12	p.S1255Vfs*12	ENST00000399503	NM_005921.1	1254	tTTTCTTCt/tt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149499073	149499073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	10	694	0	ENST00000261799.4:c.2755C>T	p.Arg919Trp	p.R919W	ENST00000261799	NM_002609.3	919	Cgg/Tgg																																																																															
SESN1	27244	MSKCC	GRCh37	6	109323542	109323542	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	40	532	0	ENST00000436639.2:c.284T>G	p.Leu95Arg	p.L95R	ENST00000436639	NM_014454.2	95	cTt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177631	56177632	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	T			P-0048710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	23	424	0	ENST00000399503.3:c.2604_2605delinsT	p.Ile869SerfsTer5	p.I869Sfs*5	ENST00000399503	NM_005921.1	868	gcCAtc/gcTtc																																																																															
ALK	238	MSKCC	GRCh37	2	29432664	29432664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	11	478	0	ENST00000389048.3:c.3824G>A	p.Arg1275Gln	p.R1275Q	ENST00000389048	NM_004304.4	1275	cGa/cAa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255881	16255881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	36	411	0	ENST00000375759.3:c.3146C>T	p.Ser1049Phe	p.S1049F	ENST00000375759	NM_015001.2	1049	tCt/tTt																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46509377	46509377	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	118	571	0	ENST00000262741.5:c.1354del	p.Val452PhefsTer39	p.V452Ffs*39	ENST00000262741	NM_003629.3	452	Gtt/tt																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2089944	2089944	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	71	546	0	ENST00000219066.1:c.920C>A	p.Pro307Gln	p.P307Q	ENST00000219066	NM_002528.5	307	cCg/cAg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52713714	52713714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	37	365	0	ENST00000394830.3:c.14G>A	p.Arg5Lys	p.R5K	ENST00000394830	NM_018313.4	5	aGa/aAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56176590	56176591	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	90	429	1	ENST00000399503.3:c.2141dup	p.Gly715ArgfsTer21	p.G715Rfs*21	ENST00000399503	NM_005921.1	714	gca/gCca																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0048714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	177	286	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0048714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	245	501	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729613	41729613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	133	489	0	ENST00000242208.4:c.916C>T	p.Arg306Cys	p.R306C	ENST00000242208	NM_002192.2	306	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578206	7578207	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0048714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	468	714	0	ENST00000269305.4:c.642_643del	p.His214GlnfsTer7	p.H214Qfs*7	ENST00000269305	NM_001126112.2	214	caTAgt/cagt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477139	67477139	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	296	593	0	ENST00000327367.4:c.946C>T	p.Gln316Ter	p.Q316*	ENST00000327367	NM_005902.3	316	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434055	49434055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	45	755	0	ENST00000301067.7:c.7498G>A	p.Ala2500Thr	p.A2500T	ENST00000301067	NM_003482.3	2500	Gcg/Acg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16024372	16024372	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	124	286	0	ENST00000268712.3:c.1846G>T	p.Glu616Ter	p.E616*	ENST00000268712	NM_006311.3	616	Gaa/Taa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873041	134873041	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	71	617	0	ENST00000398015.3:c.1345A>G	p.Ser449Gly	p.S449G	ENST00000398015	NM_004441.4	449	Agc/Ggc																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182683327	182683327	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0048714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	113	406	0	ENST00000292782.4:c.218A>C	p.Lys73Thr	p.K73T	ENST00000292782	NM_020640.2	73	aAa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	375	609	0	ENST00000269305.4:c.770T>A	p.Leu257Gln	p.L257Q	ENST00000269305	NM_001126112.2	257	cTg/cAg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118360516	118360516	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	180	369	0	ENST00000534358.1:c.4489G>T	p.Glu1497Ter	p.E1497*	ENST00000534358	NM_005933.3	1497	Gag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152027790	152027791	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCAGCATCCTCTTC			P-0048722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	72	587	0	ENST00000262189.6:c.271_284dup	p.Ala96LysfsTer14	p.A96Kfs*14	ENST00000262189	NM_170606.2	95	gaa/gaGAAGAGGATGCTGAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0048766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	86	647	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0048766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	60	452	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	26	290	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346648	89346648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	79	617	0	ENST00000301030.4:c.6302G>A	p.Ser2101Asn	p.S2101N	ENST00000301030	NM_001256183.1	2101	aGc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0048767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	312	452	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0048767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	176	339	1	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971039	21971058	+	frameshift_variant	Frame_Shift_Del	DEL	GCACGTCCAGCCGCGCCCCG	GCACGTCCAGCCGCGCCCCG	-			P-0048767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	445	526	0	ENST00000304494.5:c.300_319del	p.Gly101ArgfsTer12	p.G101Rfs*12	ENST00000304494	NM_000077.4	100	gcCGGGGCGCGGCTGGACGTGCgc/gcgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0048768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	30	561	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0048768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1281	256	746	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0048774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	239	687	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	119	408	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921567	178921567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	20	277	0	ENST00000263967.3:c.1049A>G	p.Asp350Gly	p.D350G	ENST00000263967	NM_006218.2	350	gAc/gGc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55152018	55152018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs79948560		P-0048774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	33	434	0	ENST00000257290.5:c.2450G>A	p.Arg817His	p.R817H	ENST00000257290	NM_006206.4	817	cGt/cAt																																																																															
ATR	545	MSKCC	GRCh37	3	142217556	142217557	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	62	390	0	ENST00000350721.4:c.5440dupA	p.Arg1814LysfsTer8	p.R1814Kfs*8	ENST00000350721	NM_001184.3	1814	aga/aAga																																																																															
BCL2	596	MSKCC	GRCh37	18	60985558	60985558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	206	558	0	ENST00000333681.4:c.342G>T	p.Glu114Asp	p.E114D	ENST00000333681		114	gaG/gaT																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276868	15276868	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	78	825	0	ENST00000263388.2:c.5397T>G	p.Cys1799Trp	p.C1799W	ENST00000263388	NM_000435.2	1799	tgT/tgG																																																																															
SOS1	6654	MSKCC	GRCh37	2	39283859	39283859	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	46	388	1	ENST00000402219.2:c.494C>A	p.Ala165Glu	p.A165E	ENST00000402219	NM_005633.3	165	gCa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112173880	112173880	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	97	321	0	ENST00000257430.4:c.2590del	p.His864IlefsTer52	p.H864Ifs*52	ENST00000257430	NM_000038.5	863	taC/ta																																																																															
APC	324	MSKCC	GRCh37	5	112175494	112175495	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCAGCTCCGTTCAGAGTGAACCATGCAGTGGAATGGTAAGTG			P-0048774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	52	326	0	ENST00000257430.4:c.4206_4248dup	p.Ile1417GlnfsTer6	p.I1417Qfs*6	ENST00000257430	NM_000038.5	1401	-/GCCAGCTCCGTTCAGAGTGAACCATGCAGTGGAATGGTAAGTG																																																																															
TSC1	7248	MSKCC	GRCh37	9	135779803	135779803	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	84	424	0	ENST00000298552.3:c.2036T>G	p.Phe679Cys	p.F679C	ENST00000298552	NM_001162426.1	679	tTt/tGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27102136	27102137	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0048775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	112	453	0	ENST00000324856.7:c.5063_5064dup	p.Asp1689Ter	p.D1689*	ENST00000324856	NM_006015.4	1688	tta/tTAta																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197120	26197120	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	137	630	0	ENST00000356476.2:c.359T>G	p.Ile120Ser	p.I120S	ENST00000356476		120	aTc/aGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	144	312	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1219357	1219357	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	252	638	0	ENST00000326873.7:c.409C>T	p.Gln137Ter	p.Q137*	ENST00000326873	NM_000455.4	137	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628857	187628858	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	162	411	0	ENST00000441802.2:c.2124dup	p.Val709CysfsTer9	p.V709Cfs*9	ENST00000441802	NM_005245.3	708	-/T																																																																															
STAG2	10735	MSKCC	GRCh37	X	123171377	123171377	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0048783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	115	224	0	ENST00000218089.9:c.289T>A	p.Ser97Thr	p.S97T	ENST00000218089	NM_001042749.1	97	Tcg/Acg																																																																															
ATM	472	MSKCC	GRCh37	11	108098586	108098591	+	frameshift_variant	Frame_Shift_Del	DEL	AAAATA	AAAATA	T			P-0048783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	63	184	0	ENST00000278616.4:c.156_161delinsT	p.Lys53PhefsTer8	p.K53Ffs*8	ENST00000278616	NM_000051.3	52	ggAAAATAt/ggTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	25	300	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	40	254	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	54	153	0	ENST00000257430.4:c.4067C>A	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	77	393	0	ENST00000269305.4:c.800G>C	p.Arg267Pro	p.R267P	ENST00000269305	NM_001126112.2	267	cGg/cCg																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	24	150	0	ENST00000257430.4:c.4057del	p.Glu1353AsnfsTer62	p.E1353Nfs*62	ENST00000257430	NM_000038.5	1353	Gaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	221	761	0	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct																																																																															
POLE	5426	MSKCC	GRCh37	12	133244099	133244099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	142	416	0	ENST00000320574.5:c.2309G>C	p.Gly770Ala	p.G770A	ENST00000320574	NM_006231.2	770	gGg/gCg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0048653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	65	220	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374865	45374865	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	206	396	0	ENST00000262160.6:c.978A>C	p.Glu326Asp	p.E326D	ENST00000262160	NM_005901.5	326	gaA/gaC																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111495	8111496	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGA			P-0048659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	252	534	1	ENST00000346208.3:c.982_985dup	p.Arg329MetfsTer24	p.R329Mfs*24	ENST00000346208		327	-/TGGA																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633634	69633634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	13	26	0	ENST00000334134.2:c.68C>T	p.Ala23Val	p.A23V	ENST00000334134	NM_005247.2	23	gCg/gTg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30132955	30132955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	37	525	1	ENST00000331968.5:c.646C>T	p.Arg216Cys	p.R216C	ENST00000331968	NM_002742.2	216	Cgc/Tgc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	179	557	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	123	391	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	206	571	2	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	369	673	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023544	31023544	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116112525		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	155	516	0	ENST00000375687.4:c.3029C>T	p.Thr1010Met	p.T1010M	ENST00000375687	NM_015338.5	1010	aCg/aTg																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	216	558	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	99	277	0	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	229	679	1	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680656	88680656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	167	574	0	ENST00000360948.2:c.601C>T	p.Arg201Cys	p.R201C	ENST00000360948	NM_001012338.2	201	Cgc/Tgc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	215	739	3	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	150	464	1	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																															
BARD1	580	MSKCC	GRCh37	2	215646085	215646085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	326	522	1	ENST00000260947.4:c.513del	p.Asp172MetfsTer40	p.D172Mfs*40	ENST00000260947	NM_000465.2	171	aaA/aa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	128	430	2	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
POLE	5426	MSKCC	GRCh37	12	133214646	133214646	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199979862		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	168	545	0	ENST00000320574.5:c.5632C>T	p.Arg1878Cys	p.R1878C	ENST00000320574	NM_006231.2	1878	Cgc/Tgc																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	208	480	7	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907421	32907421	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs80359307		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	193	281	0	ENST00000380152.3:c.1813delA	p.Ile605TyrfsTer9	p.I605Yfs*9	ENST00000380152		602	ggA/gg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	104	384	1	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111884834	111884834	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs181079548		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	140	465	0	ENST00000341259.2:c.923G>A	p.Arg308Gln	p.R308Q	ENST00000341259	NM_005475.2	308	cGa/cAa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176720964	176720964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	170	487	0	ENST00000439151.2:c.6595C>T	p.Arg2199Cys	p.R2199C	ENST00000439151	NM_022455.4	2199	Cgt/Tgt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	30946592	30946594	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs752094508		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	46	185	2	ENST00000375687.4:c.25_27del	p.Lys9del	p.K9del	ENST00000375687	NM_015338.5	5	cAGAag/cag																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716329	52716329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	38	651	1	ENST00000322088.6:c.773G>A	p.Arg258His	p.R258H	ENST00000322088	NM_014225.5	258	cGc/cAc																																																																															
CBL	867	MSKCC	GRCh37	11	119149355	119149356	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATG	rs1358339544		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	86	374	0	ENST00000264033.4:c.1380_1382dup	p.Asp460dup	p.D460dup	ENST00000264033	NM_005188.3	460	tat/tATGat																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573123	64573123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	130	360	0	ENST00000337652.1:c.1184C>T	p.Pro395Leu	p.P395L	ENST00000337652	NM_130803.2	395	cCg/cTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29663454	29663454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	146	429	0	ENST00000358273.4:c.6110C>T	p.Ala2037Val	p.A2037V	ENST00000358273	NM_001042492.2	2037	gCt/gTt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	442811	442811	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	105	317	1	ENST00000399788.2:c.1495del	p.Glu499SerfsTer19	p.E499Sfs*19	ENST00000399788	NM_001042603.1	499	Gag/ag																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	155	454	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	160	585	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC	rs1361078163		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	80	444	0	ENST00000234420.5:c.3260_3261dup	p.Phe1088ProfsTer3	p.F1088Pfs*3	ENST00000234420	NM_000179.2	1085	acc/aCCcc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878749	151878749	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1211949081		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	111	386	0	ENST00000262189.6:c.6196C>T	p.Arg2066Ter	p.R2066*	ENST00000262189	NM_170606.2	2066	Cga/Tga																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40375486	40375486	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138255473		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	191	731	1	ENST00000293328.3:c.464C>T	p.Thr155Met	p.T155M	ENST00000293328	NM_012448.3	155	aCg/aTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307639	118307639	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	126	596	0	ENST00000534358.1:c.416del	p.Gly139GlufsTer11	p.G139Efs*11	ENST00000534358	NM_005933.3	138	Ggg/gg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527742	157527742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	156	470	0	ENST00000346085.5:c.5467G>A	p.Gly1823Arg	p.G1823R	ENST00000346085	NM_020732.3	1823	Ggg/Agg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31493321	31493322	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	92	343	0	ENST00000344624.3:c.1834dupC	p.Leu612ProfsTer8	p.L612Pfs*8	ENST00000344624		612	ctg/cCtg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243778402	243778402	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	114	331	0	ENST00000263826.5:c.623del	p.Leu208Ter	p.L208*	ENST00000263826	NM_005465.4	208	tTa/ta																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983134	201983134	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	181	575	0	ENST00000359651.3:c.983A>C	p.Lys328Thr	p.K328T	ENST00000359651		328	aAg/aCg																																																																															
MDM4	4194	MSKCC	GRCh37	1	204513799	204513799	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	78	235	0	ENST00000367182.3:c.809T>C	p.Val270Ala	p.V270A	ENST00000367182	NM_001278516.1	270	gTa/gCa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022718	12022719	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	145	565	0	ENST00000396373.4:c.827dup	p.Leu277SerfsTer23	p.L277Sfs*23	ENST00000396373	NM_001987.4	275	cac/caCc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121435325	121435325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	75	792	2	ENST00000257555.6:c.1358G>A	p.Gly453Asp	p.G453D	ENST00000257555		453	gGc/gAc																																																																															
CD276	80381	MSKCC	GRCh37	15	73994790	73994790	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	254	560	0	ENST00000318443.5:c.274C>A	p.Arg92Ser	p.R92S	ENST00000318443	NM_001024736.1	92	Cgc/Agc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351409	89351409	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	159	611	0	ENST00000301030.4:c.1541T>C	p.Leu514Pro	p.L514P	ENST00000301030	NM_001256183.1	514	cTg/cCg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40491345	40491345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	178	508	1	ENST00000264657.5:c.455G>A	p.Arg152Gln	p.R152Q	ENST00000264657	NM_139276.2	152	cGg/cAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1223130	1223130	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	180	663	0	ENST00000326873.7:c.1067T>A	p.Ile356Asn	p.I356N	ENST00000326873	NM_000455.4	356	aTc/aAc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1611788	1611788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	174	666	0	ENST00000344749.5:c.1874G>A	p.Gly625Asp	p.G625D	ENST00000344749	NM_001136139.2	625	gGt/gAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602631	10602631	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	222	818	0	ENST00000171111.5:c.947T>C	p.Val316Ala	p.V316A	ENST00000171111	NM_203500.1	316	gTg/gCg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220973	36220973	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	158	557	0	ENST00000222270.7:c.5023C>A	p.Gln1675Lys	p.Q1675K	ENST00000222270	NM_014727.1	1675	Cag/Aag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095914	178095914	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	133	412	0	ENST00000397062.3:c.1417del	p.Ile473SerfsTer12	p.I473Sfs*12	ENST00000397062	NM_006164.4	473	Atc/tc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729380	41729380	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	151	544	0	ENST00000242208.4:c.1149del	p.Phe384LeufsTer13	p.F384Lfs*13	ENST00000242208	NM_002192.2	383	ccC/cc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845996	151845996	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	144	488	0	ENST00000262189.6:c.13016A>G	p.His4339Arg	p.H4339R	ENST00000262189	NM_170606.2	4339	cAt/cGt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900240	101900240	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	123	372	0	ENST00000374994.4:c.677del	p.Gly226GlufsTer27	p.G226Efs*27	ENST00000374994	NM_004612.2	225	cGg/cg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045909	47045909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	181	327	0	ENST00000329236.7:c.2470C>T	p.Arg824Trp	p.R824W	ENST00000329236	NM_001204466.1	824	Cgg/Tgg																																																																															
XIAP	331	MSKCC	GRCh37	X	123020156	123020156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	193	343	0	ENST00000355640.3:c.644G>A	p.Arg215His	p.R215H	ENST00000355640		215	cGt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0048696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	46	439	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
ATM	472	MSKCC	GRCh37	11	108202738	108202738	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	132	282	0	ENST00000278616.4:c.7762C>G	p.Pro2588Ala	p.P2588A	ENST00000278616	NM_000051.3	2588	Cct/Gct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	169	339	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435189	49435189	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	187	450	0	ENST00000301067.7:c.6364C>G	p.Pro2122Ala	p.P2122A	ENST00000301067	NM_003482.3	2122	Ccc/Gcc																																																																															
B2M	567	MSKCC	GRCh37	15	45003701	45003749	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	TCGCGCTGGCGGGCATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTC	TCGCGCTGGCGGGCATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTC	-			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	149	274	0	ENST00000558401.1:c.-40_9del		p.*14*	ENST00000558401	NM_004048.2																																																																																	
GRIN2A	2903	MSKCC	GRCh37	16	9923397	9923397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	96	505	0	ENST00000330684.3:c.1890G>A	p.Met630Ile	p.M630I	ENST00000330684	NM_001134407.1	630	atG/atA																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347628	89347628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	319	507	0	ENST00000301030.4:c.5322C>A	p.Asn1774Lys	p.N1774K	ENST00000301030	NM_001256183.1	1774	aaC/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	283	468	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011106	12011106	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	93	284	0	ENST00000353533.5:c.514-1G>A		p.X172_splice	ENST00000353533	NM_003010.3	172																																																																																
STK11	6794	MSKCC	GRCh37	19	1220505	1220505	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	311	593	1	ENST00000326873.7:c.597+1G>T		p.X199_splice	ENST00000326873	NM_000455.4	199																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10610293	10610293	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	387	653	1	ENST00000171111.5:c.417del	p.Phe139LeufsTer18	p.F139Lfs*18	ENST00000171111	NM_203500.1	139	ttC/tt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017724	31017724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	116	438	0	ENST00000375687.4:c.586G>A	p.Asp196Asn	p.D196N	ENST00000375687	NM_015338.5	196	Gat/Aat																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713506	30713506	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs886038794		P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	219	392	0	ENST00000359013.4:c.906G>T	p.Lys302Asn	p.K302N	ENST00000359013	NM_001024847.2	302	aaG/aaT																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179378	56179378	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	85	171	2	ENST00000399503.3:c.3691A>T	p.Thr1231Ser	p.T1231S	ENST00000399503	NM_005921.1	1231	Acc/Tcc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149441306	149441306	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	123	503	0	ENST00000286301.3:c.1733C>G	p.Pro578Arg	p.P578R	ENST00000286301	NM_005211.3	578	cCc/cGc																																																																															
MET	4233	MSKCC	GRCh37	7	116397738	116397738	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	109	431	0	ENST00000397752.3:c.2012G>T	p.Gly671Val	p.G671V	ENST00000397752	NM_000245.2	671	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	37	416	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	82	604	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	58	358	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696716	47696716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	35	312	0	ENST00000347630.2:c.232G>A	p.Glu78Lys	p.E78K	ENST00000347630	NM_001007230.1	78	Gaa/Aaa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651382	52651382	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	45	398	0	ENST00000394830.3:c.1714G>T	p.Glu572Ter	p.E572*	ENST00000394830	NM_018313.4	572	Gag/Tag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	419043	419043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	42	351	0	ENST00000399788.2:c.3304G>A	p.Glu1102Lys	p.E1102K	ENST00000399788	NM_001042603.1	1102	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023376	27023385	+	frameshift_variant	Frame_Shift_Del	DEL	TCGCCGCCGC	TCGCCGCCGC	-			P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1209	73	385	0	ENST00000324856.7:c.482_491del	p.Val161AlafsTer68	p.V161Afs*68	ENST00000324856	NM_006015.4	161	gTCGCCGCCGCc/gc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094437	27094437	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	52	433	0	ENST00000324856.7:c.3145C>G	p.Leu1049Val	p.L1049V	ENST00000324856	NM_006015.4	1049	Ctg/Gtg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43773221	43773221	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	36	251	0	ENST00000382044.4:c.372-1G>T		p.X124_splice	ENST00000382044	NM_001141980.1	124																																																																																
TRAF7	84231	MSKCC	GRCh37	16	2225137	2225137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1195	71	754	0	ENST00000326181.6:c.1372G>A	p.Asp458Asn	p.D458N	ENST00000326181	NM_032271.2	458	Gac/Aac																																																																															
SLX4	84464	MSKCC	GRCh37	16	3642839	3642839	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1096	67	539	0	ENST00000294008.3:c.2188G>C	p.Glu730Gln	p.E730Q	ENST00000294008	NM_032444.2	730	Gag/Cag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9927991	9927991	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	24	290	0	ENST00000330684.3:c.1748G>C	p.Gly583Ala	p.G583A	ENST00000330684	NM_001134407.1	583	gGa/gCa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50830342	50830342	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	56	325	0	ENST00000398568.2:c.2785C>G	p.Gln929Glu	p.Q929E	ENST00000398568	NM_001042412.1	929	Caa/Gaa																																																																															
AR	367	MSKCC	GRCh37	X	66765625	66765625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1306	113	825	0	ENST00000374690.3:c.637G>A	p.Glu213Lys	p.E213K	ENST00000374690	NM_000044.3	213	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578518	7578518	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs28934875		P-0048747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	29	742	0	ENST00000269305.4:c.412G>C	p.Ala138Pro	p.A138P	ENST00000269305	NM_001126112.2	138	Gcc/Ccc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518086	187518086	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	75	428	0	ENST00000441802.2:c.12608G>T	p.Arg4203Leu	p.R4203L	ENST00000441802	NM_005245.3	4203	cGt/cTt																																																																															
PAK1	5058	MSKCC	GRCh37	11	77091035	77091035	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	34	247	0	ENST00000356341.3:c.195T>G	p.Asn65Lys	p.N65K	ENST00000356341	NM_002576.4	65	aaT/aaG																																																																															
MAX	4149	MSKCC	GRCh37	14	65544697	65544697	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0048747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	97	595	0	ENST00000358664.4:c.229A>T	p.Lys77Ter	p.K77*	ENST00000358664	NM_002382.4	77	Aaa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29667529	29667529	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	145	342	0	ENST00000358273.4:c.6929del	p.Pro2310LeufsTer9	p.P2310Lfs*9	ENST00000358273	NM_001042492.2	2310	Cct/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	248	684	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0048751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	56	421	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0048751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	53	515	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0048751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	20	204	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86659287	86659290	+	frameshift_variant	Frame_Shift_Del	DEL	TCTG	TCTG	-			P-0048751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	20	193	0	ENST00000274376.6:c.1579_1582del	p.Val527MetfsTer16	p.V527Mfs*16	ENST00000274376	NM_002890.2	526	TCTGtc/tc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344053	118344055	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0048751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	40	275	0	ENST00000534358.1:c.2184_2186del	p.Ser729del	p.S729del	ENST00000534358	NM_005933.3	727	TCT/-																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344789	118344789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	64	270	0	ENST00000534358.1:c.2915C>A	p.Thr972Asn	p.T972N	ENST00000534358	NM_005933.3	972	aCc/aAc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0048752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	24	504	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CBFB	865	MSKCC	GRCh37	16	67063317	67063317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	40	287	0	ENST00000412916.2:c.7C>T	p.Arg3Cys	p.R3C	ENST00000412916		3	Cgc/Tgc																																																																															
CDH1	999	MSKCC	GRCh37	16	68847393	68847407	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCAAAGGTTTGTATG	GCAAAGGTTTGTATG	-			P-0048752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	42	429	0	ENST00000261769.5:c.1316_1320+10del		p.X439_splice	ENST00000261769	NM_004360.3	439																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	152	366	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	131	357	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	187	369	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	129	253	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631837	90631837	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	283	539	0	ENST00000330062.3:c.516G>T	p.Arg172Ser	p.R172S	ENST00000330062	NM_002168.2	172	agG/agT																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117872	70117872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	471	474	0	ENST00000245479.2:c.340G>A	p.Val114Met	p.V114M	ENST00000245479	NM_000346.3	114	Gtg/Atg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6035238	6035238	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1805322		P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	158	292	0	ENST00000265849.7:c.830C>T	p.Thr277Met	p.T277M	ENST00000265849	NM_000535.5	277	aCg/aTg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47656949	47656949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	120	248	0	ENST00000233146.2:c.1145G>A	p.Arg382His	p.R382H	ENST00000233146	NM_000251.2	382	cGt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153259007	153259007	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	86	264	0	ENST00000281708.4:c.808C>T	p.Gln270Ter	p.Q270*	ENST00000281708	NM_033632.3	270	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175753	112175754	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	132	287	0	ENST00000257430.4:c.4462_4463insG	p.Leu1488CysfsTer26	p.L1488Cfs*26	ENST00000257430	NM_000038.5	1488	tta/tGta																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922173	39922174	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	32	225	0	ENST00000378444.4:c.3998dup	p.Cys1334ValfsTer75	p.C1334Vfs*75	ENST00000378444	NM_001123385.1	1333	ctg/ctTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931723	39931723	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	51	252	0	ENST00000378444.4:c.2876del	p.Pro959HisfsTer62	p.P959Hfs*62	ENST00000378444	NM_001123385.1	959	cCa/ca																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932610	39932611	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	39	317	0	ENST00000378444.4:c.1988_1989del	p.Pro663ArgfsTer76	p.P663Rfs*76	ENST00000378444	NM_001123385.1	663	cCT/c																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17743046	17743046	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	69	601	0	ENST00000250003.3:c.954G>T	p.Gln318His	p.Q318H	ENST00000250003	NM_002478.4	318	caG/caT																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949339	71949339	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	53	524	0	ENST00000298229.2:c.3719G>C	p.Gly1240Ala	p.G1240A	ENST00000298229	NM_001567.3	1240	gGg/gCg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998952	100998952	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	76	665	0	ENST00000325455.5:c.850G>T	p.Glu284Ter	p.E284*	ENST00000325455	NM_001202474.3	284	Gag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108199896	108199896	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	65	189	0	ENST00000278616.4:c.7238A>G	p.Lys2413Arg	p.K2413R	ENST00000278616	NM_000051.3	2413	aAg/aGg																																																																															
CBL	867	MSKCC	GRCh37	11	119169067	119169067	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	31	324	0	ENST00000264033.4:c.2252-1G>T		p.X751_splice	ENST00000264033	NM_005188.3	751																																																																																
RECQL	5965	MSKCC	GRCh37	12	21643202	21643202	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	58	460	0	ENST00000421138.2:c.325G>T	p.Val109Leu	p.V109L	ENST00000421138		109	Gta/Tta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	112	348	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945085	31945085	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	128	499	0	ENST00000340398.3:c.16C>G	p.Gln6Glu	p.Q6E	ENST00000340398	NM_001013699.2	6	Cag/Gag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30105605	30105605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	147	489	1	ENST00000331968.5:c.1081G>A	p.Glu361Lys	p.E361K	ENST00000331968	NM_002742.2	361	Gaa/Aaa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610162	81610162	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	117	360	0	ENST00000298171.2:c.1760T>A	p.Leu587Gln	p.L587Q	ENST00000298171	NM_000369.2	587	cTg/cAg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273902	10273902	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	53	614	2	ENST00000330684.3:c.367C>A	p.Pro123Thr	p.P123T	ENST00000330684	NM_001134407.1	123	Ccc/Acc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619007	37619007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	37	462	0	ENST00000447079.4:c.683C>T	p.Ser228Phe	p.S228F	ENST00000447079	NM_015083.1	228	tCt/tTt																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56774158	56774158	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	48	388	0	ENST00000337432.4:c.509T>G	p.Val170Gly	p.V170G	ENST00000337432	NM_058216.2	170	gTa/gGa																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732442	74732442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	69	286	0	ENST00000359995.5:c.467G>T	p.Arg156Leu	p.R156L	ENST00000359995	NM_001195427.1	156	cGa/cTa																																																																															
TP63	8626	MSKCC	GRCh37	3	189590664	189590664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	32	311	0	ENST00000264731.3:c.1229C>T	p.Thr410Ile	p.T410I	ENST00000264731	NM_003722.4	410	aCt/aTt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143067061	143067062	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	36	323	1	ENST00000262992.4:c.1651_1652delinsTT	p.Gly551Phe	p.G551F	ENST00000262992	NM_001101669.1	551	GGc/TTc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672536	30672536	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	51	480	0	ENST00000376406.3:c.4424G>T	p.Arg1475Met	p.R1475M	ENST00000376406	NM_014641.2	1475	aGg/aTg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741562	145741562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	185	639	0	ENST00000428558.2:c.941C>T	p.Pro314Leu	p.P314L	ENST00000428558	NM_004260.3	314	cCa/cTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0048619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	93	521	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922020	39922020	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	72	497	0	ENST00000378444.4:c.4152C>A	p.Tyr1384Ter	p.Y1384*	ENST00000378444	NM_001123385.1	1384	taC/taA																																																																															
TET1	80312	MSKCC	GRCh37	10	70405168	70405168	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	92	443	0	ENST00000373644.4:c.2682A>G	p.Ile894Met	p.I894M	ENST00000373644	NM_030625.2	894	atA/atG																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068862	30068862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0048619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	74	339	0	ENST00000331968.5:c.2067G>T	p.Gln689His	p.Q689H	ENST00000331968	NM_002742.2	689	caG/caT																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538256	9538256	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0048619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	73	370	0	ENST00000353224.5:c.1742G>T	p.Arg581Leu	p.R581L	ENST00000353224	NM_177990.2	581	cGg/cTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032569	47032570	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	92	604	0	ENST00000329236.7:c.246dup	p.Arg83SerfsTer20	p.R83Sfs*20	ENST00000329236	NM_001204466.1	82	gtt/gTtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578196	7578197	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	86	513	0	ENST00000269305.4:c.652dup	p.Val218GlyfsTer4	p.V218Gfs*4	ENST00000269305	NM_001126112.2	218	gtg/gGtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0048629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	449	349	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573563	48573564	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	216	280	1	ENST00000342988.3:c.153dupA	p.Asp52ArgfsTer2	p.D52Rfs*2	ENST00000342988	NM_005359.5	49	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7579484	7579484	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	486	601	0	ENST00000269305.4:c.203del	p.Glu68GlyfsTer55	p.E68Gfs*55	ENST00000269305	NM_001126112.2	68	gAg/gg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938466	44938468	+	frameshift_variant	Frame_Shift_Ins	INS	TGC	TGC	ATCA			P-0048629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	245	257	0	ENST00000377967.4:c.3014_3016delinsATCA	p.Leu1005TyrfsTer6	p.L1005Yfs*6	ENST00000377967	NM_021140.2	1005	tTGCag/tATCAag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	213	463	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0048666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	361	657	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0048666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	118	465	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	84	271	3	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439832	51439832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	208	386	0	ENST00000262662.1:c.397C>T	p.Arg133Trp	p.R133W	ENST00000262662		133	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112174471	112174475	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAC	AAAAC	-			P-0048666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	137	304	0	ENST00000257430.4:c.3183_3187del	p.Gln1062Ter	p.Q1062*	ENST00000257430	NM_000038.5	1060	atAAAACaa/ataa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117678052	117678052	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	58	330	0	ENST00000368508.3:c.3881A>T	p.Asn1294Ile	p.N1294I	ENST00000368508	NM_002944.2	1294	aAt/aTt																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540380	23540380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	248	416	2	ENST00000380871.4:c.23G>T	p.Arg8Leu	p.R8L	ENST00000380871	NM_006167.3	8	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	708	747	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	2192	399	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11552822		P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	204	741	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434148	12434148	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	334	413	0	ENST00000287820.6:c.516C>G	p.Ile172Met	p.I172M	ENST00000287820	NM_015869.4	172	atC/atG																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112430	115112430	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	325	692	0	ENST00000257566.3:c.1310A>G	p.His437Arg	p.H437R	ENST00000257566	NM_016569.3	437	cAt/cGt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602854	10602854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	501	885	0	ENST00000171111.5:c.724G>A	p.Glu242Lys	p.E242K	ENST00000171111	NM_203500.1	242	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100646	8100646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	478	800	0	ENST00000346208.3:c.620C>T	p.Ala207Val	p.A207V	ENST00000346208		207	gCc/gTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374487	118374487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	33	481	1	ENST00000534358.1:c.7880G>A	p.Arg2627His	p.R2627H	ENST00000534358	NM_005933.3	2627	cGt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432590	49432590	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	326	802	1	ENST00000301067.7:c.8549del	p.Leu2850GlnfsTer60	p.L2850Qfs*60	ENST00000301067	NM_003482.3	2850	cTa/ca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435236	49435243	+	frameshift_variant	Frame_Shift_Del	DEL	ATGCGGAG	ATGCGGAG	-			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	278	707	0	ENST00000301067.7:c.6310_6317del	p.Leu2104SerfsTer48	p.L2104Sfs*48	ENST00000301067	NM_003482.3	2104	CTCCGCATt/t																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120912	115120912	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	306	696	0	ENST00000257566.3:c.94G>T	p.Ala32Ser	p.A32S	ENST00000257566	NM_016569.3	32	Gcg/Tcg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135409	30135409	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	222	386	0	ENST00000331968.5:c.409G>C	p.Ala137Pro	p.A137P	ENST00000331968	NM_002742.2	137	Gcc/Ccc																																																																															
BLM	641	MSKCC	GRCh37	15	91303498	91303498	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	337	408	0	ENST00000355112.3:c.1209G>C	p.Gln403His	p.Q403H	ENST00000355112	NM_000057.2	403	caG/caC																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873104	136873104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	321	515	1	ENST00000241393.3:c.394C>A	p.Leu132Met	p.L132M	ENST00000241393	NM_003467.2	132	Ctg/Atg																																																																															
EP300	2033	MSKCC	GRCh37	22	41523642	41523642	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	334	728	0	ENST00000263253.7:c.1058G>T	p.Arg353Leu	p.R353L	ENST00000263253	NM_001429.3	353	cGc/cTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390966	89390967	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	111	510	1	ENST00000336596.2:c.1032_1033delinsAA	p.Asp344_Trp345delinsGluArg	p.D344_W345delinsER	ENST00000336596	NM_005233.5	344	gaCTgg/gaAAgg																																																																															
KDR	3791	MSKCC	GRCh37	4	55955134	55955134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	2075	383	1	ENST00000263923.4:c.3411G>T	p.Gln1137His	p.Q1137H	ENST00000263923	NM_002253.2	1137	caG/caT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230789	66230789	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	172	400	1	ENST00000273854.3:c.2182A>G	p.Met728Val	p.M728V	ENST00000273854	NM_004439.5	728	Atg/Gtg																																																																															
STK19	8859	MSKCC	GRCh37	6	31948457	31948457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	190	374	0	ENST00000375331.2:c.928C>T	p.Arg310Trp	p.R310W	ENST00000375331	NM_004197.1	310	Cgg/Tgg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94124453	94124453	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	189	492	0	ENST00000369303.4:c.130G>T	p.Glu44Ter	p.E44*	ENST00000369303	NM_004440.3	44	Gag/Tag																																																																															
PAX5	5079	MSKCC	GRCh37	9	36923363	36923363	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	390	607	1	ENST00000358127.4:c.899C>A	p.Pro300His	p.P300H	ENST00000358127	NM_001280556.1	300	cCc/cAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039696	47039696	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	307	725	0	ENST00000329236.7:c.914A>G	p.Lys305Arg	p.K305R	ENST00000329236	NM_001204466.1	305	aAg/aGg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21620051	21620051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	166	509	0	ENST00000382592.4:c.115G>A	p.Ala39Thr	p.A39T	ENST00000382592	NM_014572.2	39	Gca/Aca																																																																															
TSHR	7253	MSKCC	GRCh37	14	81554338	81554338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	84	358	0	ENST00000298171.2:c.358G>A	p.Asp120Asn	p.D120N	ENST00000298171	NM_000369.2	120	Gat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0048671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	92	282	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404587	8404587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	67	320	0	ENST00000356435.5:c.4160C>T	p.Ala1387Val	p.A1387V	ENST00000356435		1387	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577525	7577527	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0048673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	273	585	0	ENST00000269305.4:c.754_756del	p.Leu252del	p.L252del	ENST00000269305	NM_001126112.2	252	CTC/-																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781276	3781276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1261	368	869	0	ENST00000262367.5:c.5089A>G	p.Thr1697Ala	p.T1697A	ENST00000262367	NM_004380.2	1697	Acc/Gcc																																																																															
ALK	238	MSKCC	GRCh37	2	29416148	29416148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	216	500	1	ENST00000389048.3:c.4805G>A	p.Gly1602Asp	p.G1602D	ENST00000389048	NM_004304.4	1602	gGt/gAt																																																																															
PAX5	5079	MSKCC	GRCh37	9	37034006	37034006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	196	383	1	ENST00000358127.4:c.23C>T	p.Pro8Leu	p.P8L	ENST00000358127	NM_001280556.1	8	cCg/cTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0047580-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			684	537	554	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32930709	32930709	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047580-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			551	124	538	0	ENST00000380152.3:c.7580T>G	p.Val2527Gly	p.V2527G	ENST00000380152		2527	gTa/gGa																																																																															
SUFU	51684	MSKCC	GRCh37	10	104353802	104353802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047580-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			588	37	512	0	ENST00000369902.3:c.736G>C	p.Glu246Gln	p.E246Q	ENST00000369902	NM_016169.3	246	Gag/Cag																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62321162	62321162	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047580-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1422	171	579	0	ENST00000508582.2:c.2157C>G	p.Ile719Met	p.I719M	ENST00000508582		719	atC/atG																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517423	176517423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047580-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			934	106	533	0	ENST00000292408.4:c.124G>A	p.Glu42Lys	p.E42K	ENST00000292408	NM_213647.1	42	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0048437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	69	329	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0048437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	216	640	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37681124	37681124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	63	428	0	ENST00000447079.4:c.3293C>T	p.Ala1098Val	p.A1098V	ENST00000447079	NM_015083.1	1098	gCt/gTt																																																																															
MGA	23269	MSKCC	GRCh37	15	42052657	42052818	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGAGAAATTAAAGATCACATTGGGATTACTTCATTCTTCCAAGGTTTCCAAAAGTCTCATTCTTACTCGAGTAAGTGTTCTGTGTAAATGACAGTAAGAGCTTGACTAAGAGATTCTTACCGATGATATGAGAAAGATAATCCACTGACATATAAGGGAGA	TTGAGAAATTAAAGATCACATTGGGATTACTTCATTCTTCCAAGGTTTCCAAAAGTCTCATTCTTACTCGAGTAAGTGTTCTGTGTAAATGACAGTAAGAGCTTGACTAAGAGATTCTTACCGATGATATGAGAAAGATAATCCACTGACATATAAGGGAGA	-			P-0048597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	42	685	0	ENST00000219905.7:c.7332_7398+95del		p.X2444_splice	ENST00000219905	NM_001164273.1	2444																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3789629	3789629	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	117	627	2	ENST00000262367.5:c.4230del	p.Phe1410LeufsTer49	p.F1410Lfs*49	ENST00000262367	NM_004380.2	1410	ttT/tt																																																																															
MGA	23269	MSKCC	GRCh37	15	42052611	42052611	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	214	643	0	ENST00000219905.7:c.7282C>G	p.His2428Asp	p.H2428D	ENST00000219905	NM_001164273.1	2428	Cac/Gac																																																																															
ERF	2077	MSKCC	GRCh37	19	42753053	42753056	+	frameshift_variant	Frame_Shift_Del	DEL	CCAC	CCAC	-			P-0048600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	132	846	0	ENST00000222329.4:c.1208_1211del	p.Gly403AlafsTer13	p.G403Afs*13	ENST00000222329	NM_006494.2	403	gGTGGc/gc																																																																															
MITF	4286	MSKCC	GRCh37	3	70005654	70005654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	134	613	0	ENST00000352241.4:c.986G>A	p.Gly329Asp	p.G329D	ENST00000352241	NM_198159.2	329	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0048602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	55	932	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061215	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCAGCCGTTCTCGAACATGTT	GCAGCCGTTCTCGAACATGTT	-			P-0048602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	143	712	0	ENST00000250448.2:c.754_774delAACATGTTCGAGAACGGCTGC	p.Asn252_Cys258del	p.N252_C258del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTGC/-																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0048602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	87	827	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
MGA	23269	MSKCC	GRCh37	15	42040933	42040934	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0048602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	50	1006	1	ENST00000219905.7:c.5313_5314del	p.Pro1772TyrfsTer3	p.P1772Yfs*3	ENST00000219905	NM_001164273.1	1771	TCt/t																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645688	12645688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	56	497	0	ENST00000251849.4:c.781C>A	p.Pro261Thr	p.P261T	ENST00000251849	NM_002880.3	261	Cct/Act																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713339	30713339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	62	804	0	ENST00000359013.4:c.739G>T	p.Asp247Tyr	p.D247Y	ENST00000359013	NM_001024847.2	247	Gat/Tat																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372460	55372460	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	95	1164	1	ENST00000297316.4:c.1150T>C	p.Ser384Pro	p.S384P	ENST00000297316	NM_022454.3	384	Tcc/Ccc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			157	159	312	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0012673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	247	455	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190670397	190670397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			297	78	283	0	ENST00000441310.2:c.335C>T	p.Thr112Met	p.T112M	ENST00000441310	NM_000534.4	112	aCg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444143	49444143	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	263	608	1	ENST00000301067.7:c.3228del	p.Val1078PhefsTer41	p.V1078Ffs*41	ENST00000301067	NM_003482.3	1076	gaG/ga																																																																															
FLT1	2321	MSKCC	GRCh37	13	28891654	28891654	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61731345		P-0012673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			327	247	427	0	ENST00000282397.4:c.3367G>A	p.Glu1123Lys	p.E1123K	ENST00000282397	NM_002019.4	1123	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970960	21970977	+	inframe_deletion	In_Frame_Del	DEL	GCCGCGCGCAGGTACCGT	GCCGCGCGCAGGTACCGT	-			P-0012673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			336	347	670	0	ENST00000304494.5:c.381_398del	p.Arg128_Ala133del	p.R128_A133del	ENST00000304494	NM_000077.4	127	gcACGGTACCTGCGCGCGGCt/gct																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139411826	139411826	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	291	773	0	ENST00000277541.6:c.1453G>T	p.Val485Leu	p.V485L	ENST00000277541	NM_017617.3	485	Gtg/Ttg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0025941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			150	17	192	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662554	227662554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			217	23	525	0	ENST00000305123.5:c.901C>T	p.Arg301Cys	p.R301C	ENST00000305123	NM_005544.2	301	Cgc/Tgc																																																																															
KDR	3791	MSKCC	GRCh37	4	55981469	55981469	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			148	17	234	0	ENST00000263923.4:c.468T>G	p.Asn156Lys	p.N156K	ENST00000263923	NM_002253.2	156	aaT/aaG																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205183	38205183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			227	29	460	0	ENST00000317025.8:c.507G>T	p.Glu169Asp	p.E169D	ENST00000317025	NM_023034.1	169	gaG/gaT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249019	55249019	+	protein_altering_variant	In_Frame_Ins	INS	C	C	TACAACCCCT			P-0025941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			152	21	496	0	ENST00000275493.2:c.2317delinsTACAACCCCT	p.His773delinsTyrAsnProTyr	p.H773delinsYNPY	ENST00000275493	NM_005228.3	773	Cac/TACAACCCCTac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0048500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	160	502	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18644406	18644406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	24	177	0	ENST00000266497.5:c.2584G>T	p.Gly862Cys	p.G862C	ENST00000266497		862	Ggc/Tgc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46597559	46597560	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0048500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	71	285	0	ENST00000262741.5:c.65dup	p.Tyr22Ter	p.Y22*	ENST00000262741	NM_003629.3	22	tat/taAt																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845413	42845455	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACCCCGCAGGCTGAGGATGACAAACAGGAGGCCAGTGGGGTG	GACCCCGCAGGCTGAGGATGACAAACAGGAGGCCAGTGGGGTG	-			P-0048500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	106	527	0	ENST00000398585.3:c.839-32_849del		p.X280_splice	ENST00000398585	NM_001135099.1	280																																																																																
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0048502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	560	547	4	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627721	187627721	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	115	257	0	ENST00000441802.2:c.3261G>C	p.Glu1087Asp	p.E1087D	ENST00000441802	NM_005245.3	1087	gaG/gaC																																																																															
ESR1	2099	MSKCC	GRCh37	6	152415537	152415537	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	206	416	1	ENST00000206249.3:c.1387T>C	p.Ser463Pro	p.S463P	ENST00000206249	NM_000125.3	463	Tcc/Ccc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	185	370	0	ENST00000346208.3:c.1300dup	p.His434ProfsTer73	p.H434Pfs*73	ENST00000346208		433	cac/caCc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163313655	163313655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	40	100	0	ENST00000271452.3:c.802G>T	p.Ala268Ser	p.A268S	ENST00000271452	NM_145697.2	268	Gcc/Tcc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14024574	14024574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	112	218	0	ENST00000311895.7:c.800G>A	p.Arg267His	p.R267H	ENST00000311895	NM_005236.2	267	cGc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42042713	42042726	+	frameshift_variant	Frame_Shift_Del	DEL	AAGATGATGAAGAT	AAGATGATGAAGAT	-			P-0048507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	72	336	0	ENST00000219905.7:c.6908_6921del	p.Glu2303GlyfsTer2	p.E2303Gfs*2	ENST00000219905	NM_001164273.1	2303	gAAGATGATGAAGAT/g																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251763	212251763	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	24	257	1	ENST00000342788.4:c.3296C>A	p.Ala1099Asp	p.A1099D	ENST00000342788	NM_005235.2	1099	gCt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0048512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	94	487	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	55	263	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729984	41729984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	111	499	1	ENST00000242208.4:c.545C>T	p.Pro182Leu	p.P182L	ENST00000242208	NM_002192.2	182	cCg/cTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965472	68965472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200682883		P-0048512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	70	412	0	ENST00000288368.4:c.1084C>T	p.Arg362Trp	p.R362W	ENST00000288368	NM_024870.2	362	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	147	497	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180542	56180543	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	50	278	0	ENST00000399503.3:c.3872dup	p.Arg1292LysfsTer17	p.R1292Kfs*17	ENST00000399503	NM_005921.1	1291	cta/cTta																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435482	56435482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	125	702	0	ENST00000407977.2:c.1655G>A	p.Arg552His	p.R552H	ENST00000407977		552	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	10	294	1	ENST00000342988.3:c.1157G>T	p.Gly386Val	p.G386V	ENST00000342988	NM_005359.5	386	gGt/gTt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061207	38061207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	40	532	1	ENST00000250448.2:c.782G>A	p.Arg261His	p.R261H	ENST00000250448	NM_004496.3	261	cGc/cAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68867274	68867274	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377489352		P-0048607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	52	681	0	ENST00000261769.5:c.2521G>A	p.Glu841Lys	p.E841K	ENST00000261769	NM_004360.3	841	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0048608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	136	685	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0048608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	66	558	1	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112175199	112175199	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	62	276	0	ENST00000257430.4:c.3910del	p.Ile1304Ter	p.I1304*	ENST00000257430	NM_000038.5	1303	cAa/ca																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9776562	9776562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	84	767	0	ENST00000377346.4:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000377346	NM_005026.3	222	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577507	7577507	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	177	655	0	ENST00000269305.4:c.774A>C	p.Glu258Asp	p.E258D	ENST00000269305	NM_001126112.2	258	gaA/gaC																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224165	36224165	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	58	587	0	ENST00000222270.7:c.6715C>G	p.Leu2239Val	p.L2239V	ENST00000222270	NM_014727.1	2239	Ctc/Gtc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89444996	89444996	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	30	393	0	ENST00000336596.2:c.1316C>G	p.Pro439Arg	p.P439R	ENST00000336596	NM_005233.5	439	cCt/cGt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189850	66189850	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	76	481	0	ENST00000273854.3:c.3096C>A	p.Asn1032Lys	p.N1032K	ENST00000273854	NM_004439.5	1032	aaC/aaA																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129198	152129198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	171	630	0	ENST00000206249.3:c.151G>A	p.Val51Met	p.V51M	ENST00000206249	NM_000125.3	51	Gtg/Atg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152420046	152420046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	48	558	0	ENST00000206249.3:c.1733C>T	p.Ser578Phe	p.S578F	ENST00000206249	NM_000125.3	578	tCc/tTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0048613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	74	419	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101867538	101867546	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-			P-0048613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	10	26	0	ENST00000374994.4:c.70_78delGCGGCGGCG	p.Ala24_Ala26del	p.A24_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCGGCg/ctg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	189	701	0	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307316	118307316	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs9332745		P-0047003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			9	14	8	1	ENST00000534358.1:c.89C>G	p.Ala30Gly	p.A30G	ENST00000534358	NM_005933.3	30	gCc/gGc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740776	145740776	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	145	852	0	ENST00000428558.2:c.1324G>T	p.Glu442Ter	p.E442*	ENST00000428558	NM_004260.3	442	Gag/Tag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933342	39933342	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	165	869	1	ENST00000378444.4:c.1257A>C	p.Lys419Asn	p.K419N	ENST00000378444	NM_001123385.1	419	aaA/aaC																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729606	41729606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			563	382	566	0	ENST00000242208.4:c.923G>A	p.Arg308His	p.R308H	ENST00000242208	NM_002192.2	308	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578505	7578512	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCAGGT	GGGCAGGT	-			P-0047470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			280	919	1009	0	ENST00000269305.4:c.418_425del	p.Thr140CysfsTer6	p.T140Cfs*6	ENST00000269305	NM_001126112.2	140	ACCTGCCCt/t																																																																															
POLE	5426	MSKCC	GRCh37	12	133254002	133254002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			596	466	463	0	ENST00000320574.5:c.748G>A	p.Gly250Arg	p.G250R	ENST00000320574	NM_006231.2	250	Gga/Aga																																																																															
ROS1	6098	MSKCC	GRCh37	6	117647459	117647459	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			299	94	357	0	ENST00000368508.3:c.5485A>G	p.Arg1829Gly	p.R1829G	ENST00000368508	NM_002944.2	1829	Aga/Gga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	24	329	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
BARD1	580	MSKCC	GRCh37	2	215617244	215617244	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	45	273	0	ENST00000260947.4:c.1604A>T	p.Asp535Val	p.D535V	ENST00000260947	NM_000465.2	535	gAt/gTt																																																																															
KDR	3791	MSKCC	GRCh37	4	55981108	55981108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	36	383	0	ENST00000263923.4:c.591G>T	p.Met197Ile	p.M197I	ENST00000263923	NM_002253.2	197	atG/atT																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156837945	156837945	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	52	744	0	ENST00000524377.1:c.478C>T	p.Gln160Ter	p.Q160*	ENST00000524377	NM_002529.3	160	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444756	49444756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	44	790	1	ENST00000301067.7:c.2710G>T	p.Gly904Trp	p.G904W	ENST00000301067	NM_003482.3	904	Ggg/Tgg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37681003	37681003	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	56	411	0	ENST00000447079.4:c.3172G>C	p.Glu1058Gln	p.E1058Q	ENST00000447079	NM_015083.1	1058	Gaa/Caa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207060	1207078	+	frameshift_variant	Frame_Shift_Del	DEL	CTGATGGGGGACCTGCTGG	CTGATGGGGGACCTGCTGG	-			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	61	695	0	ENST00000326873.7:c.148_166del	p.Leu50GlyfsTer8	p.L50Gfs*8	ENST00000326873	NM_000455.4	50	CTGATGGGGGACCTGCTGGgg/gg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520266	9520266	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	28	304	0	ENST00000353224.5:c.2005-2A>G		p.X669_splice	ENST00000353224	NM_177990.2	669																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31021497	31021497	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	52	495	0	ENST00000375687.4:c.1496G>T	p.Arg499Leu	p.R499L	ENST00000375687	NM_015338.5	499	cGt/cTt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1918753	1918753	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	26	251	0	ENST00000382891.5:c.916G>T	p.Glu306Ter	p.E306*	ENST00000382891	NM_133335.3	306	Gag/Tag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127351	55127351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	55	405	0	ENST00000257290.5:c.139C>A	p.Leu47Met	p.L47M	ENST00000257290	NM_006206.4	47	Ctg/Atg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35860997	35860997	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	25	265	0	ENST00000303115.3:c.126C>A	p.Cys42Ter	p.C42*	ENST00000303115	NM_002185.3	42	tgC/tgA																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509483	106509483	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200755385		P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	60	494	0	ENST00000359195.3:c.1477G>T	p.Asp493Tyr	p.D493Y	ENST00000359195	NM_002649.2	493	Gac/Tac																																																																															
NBN	4683	MSKCC	GRCh37	8	90967645	90967645	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	32	225	0	ENST00000265433.3:c.1263G>T	p.Leu421Phe	p.L421F	ENST00000265433	NM_002485.4	421	ttG/ttT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8517968	8517968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	55	333	0	ENST00000356435.5:c.1423C>A	p.Gln475Lys	p.Q475K	ENST00000356435		475	Caa/Aaa																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652398	48652398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	79	809	0	ENST00000376670.3:c.1069C>A	p.Pro357Thr	p.P357T	ENST00000376670	NM_002049.3	357	Ccc/Acc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0048457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	83	309	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	95	281	0	ENST00000349496.5:c.100G>C	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Cga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	214	591	0	ENST00000269305.4:c.773A>G	p.Glu258Gly	p.E258G	ENST00000269305	NM_001126112.2	258	gAa/gGa																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023169	33023186	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGCAAAACCCAGCCGC	GGTGCAAAACCCAGCCGC	T			P-0048457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	109	535	0	ENST00000300177.4:c.278_295delinsT	p.Trp93PhefsTer2	p.W93Ffs*2	ENST00000300177	NM_001191322.1	93	tGGTGCAAAACCCAGCCGCtt/tTtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	317	675	0	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212570043	212570059	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CTGTTATCTCTCTGACT	CTGTTATCTCTCTGACT	-			P-0048462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	27	282	0	ENST00000342788.4:c.1182_1198del	p.Val395PhefsTer13	p.V395Ffs*13	ENST00000342788	NM_005235.2	394	acAGTCAGAGAGATAACAGgt/acgt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439311	52439311	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs9848343		P-0048462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	208	511	0	ENST00000460680.1:c.932-1G>A		p.X311_splice	ENST00000460680	NM_004656.3	311																																																																																
WHSC1	7468	MSKCC	GRCh37	4	1980568	1980568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	162	660	0	ENST00000382891.5:c.4030G>A	p.Glu1344Lys	p.E1344K	ENST00000382891	NM_133335.3	1344	Gag/Aag																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519694	137519694	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	48	271	0	ENST00000367739.4:c.944C>G	p.Ser315Cys	p.S315C	ENST00000367739	NM_000416.2	315	tCc/tGc																																																																															
AR	367	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	140	173	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																															
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	28	158	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0048490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	428	1006	0	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																															
AR	367	MSKCC	GRCh37	X	66931504	66931504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	85	303	0	ENST00000374690.3:c.2146G>A	p.Val716Met	p.V716M	ENST00000374690	NM_000044.3	716	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	22	310	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767326		P-0048492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	16	213	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																															
SOS1	6654	MSKCC	GRCh37	2	39251221	39251221	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	25	413	0	ENST00000402219.2:c.1132A>T	p.Thr378Ser	p.T378S	ENST00000402219	NM_005633.3	378	Aca/Tca																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919601	96919601	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144326855		P-0048492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	39	679	1	ENST00000258439.3:c.662C>T	p.Pro221Leu	p.P221L	ENST00000258439	NM_001193304.2	221	cCg/cTg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482863	67482874	+	frameshift_variant,stop_lost	Frame_Shift_Del	DEL	AGTGTGTCTTAG	AGTGTGTCTTAG	TA			P-0048492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	42	486	1	ENST00000327367.4:c.1267_1278delinsTA	p.Ser423Ter	p.S423*	ENST00000327367	NM_005902.3	423	AGTGTGTCTTAG/TA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519985		P-0048493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	250	864	0	ENST00000269305.4:c.857A>G	p.Glu286Gly	p.E286G	ENST00000269305	NM_001126112.2	286	gAa/gGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	151	398	1	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
NUF2	83540	MSKCC	GRCh37	1	163298091	163298091	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	71	358	0	ENST00000271452.3:c.272A>T	p.His91Leu	p.H91L	ENST00000271452	NM_145697.2	91	cAt/cTt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374861	45374861	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	80	375	0	ENST00000262160.6:c.982A>C	p.Thr328Pro	p.T328P	ENST00000262160	NM_005901.5	328	Aca/Cca																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961559	54961559	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	38	332	0	ENST00000312783.6:c.73G>T	p.Val25Phe	p.V25F	ENST00000312783	NM_198436.1	25	Gtt/Ttt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637728	52637730	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	TCA	TCA	-			P-0048493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	58	289	0	ENST00000394830.3:c.2586_2588del	p.Tyr862_Glu863delinsTer	p.Y862_E863delins*	ENST00000394830	NM_018313.4	862	taTGAa/taa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168962	32168963	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0048493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	107	1038	1	ENST00000375023.3:c.4070_4071delinsAA	p.Pro1357Gln	p.P1357Q	ENST00000375023	NM_004557.3	1357	cCC/cAA																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962343	2962343	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	116	828	0	ENST00000396946.4:c.2194A>T	p.Thr732Ser	p.T732S	ENST00000396946	NM_032415.4	732	Acc/Tcc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123179149	123179149	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	38	201	0	ENST00000218089.9:c.598G>T	p.Val200Phe	p.V200F	ENST00000218089	NM_001042749.1	200	Gtc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	80	382	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	27	332	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0048522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	233	837	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0048522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	61	290	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0048522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	41	286	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26101084	26101117	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	TCCCTCATGTCGGGTCTTGAACTGACTGGGAGGC	TCCCTCATGTCGGGTCTTGAACTGACTGGGAGGC	-			P-0048522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	52	756	0	ENST00000435504.4:c.-26_8del		p.*9*	ENST00000435504																																																																																		
NTRK2	4915	MSKCC	GRCh37	9	87549181	87549181	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	110	462	1	ENST00000277120.3:c.1738C>A	p.Gln580Lys	p.Q580K	ENST00000277120		580	Cag/Aag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0048523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	717	470	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs879499034		P-0048523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	223	478	0	ENST00000250448.2:c.798C>A	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttA																																																																															
CDH1	999	MSKCC	GRCh37	16	68845760	68845760	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0048523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	145	303	0	ENST00000261769.5:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000261769	NM_004360.3	336	Gag/Tag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31422972	31422972	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	261	551	0	ENST00000344624.3:c.3341T>C	p.Ile1114Thr	p.I1114T	ENST00000344624		1114	aTt/aCt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609660	117609660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	109	284	0	ENST00000368508.3:c.7039G>A	p.Asp2347Asn	p.D2347N	ENST00000368508	NM_002944.2	2347	Gat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	164	576	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	115	281	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782177		P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	227	623	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189835	66189835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	108	339	0	ENST00000273854.3:c.3111G>T	p.Leu1037Phe	p.L1037F	ENST00000273854	NM_004439.5	1037	ttG/ttT																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685303	89685303	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	41	183	0	ENST00000371953.3:c.198G>C	p.Lys66Asn	p.K66N	ENST00000371953	NM_000314.4	66	aaG/aaC																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839699	27839699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	138	492	0	ENST00000328488.2:c.395G>A	p.Arg132Gln	p.R132Q	ENST00000328488	NM_003533.2	132	cGa/cAa																																																																															
RB1	5925	MSKCC	GRCh37	13	48954353	48954353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	79	274	0	ENST00000267163.4:c.1474G>A	p.Glu492Lys	p.E492K	ENST00000267163	NM_000321.2	492	Gag/Aag																																																																															
TET1	80312	MSKCC	GRCh37	10	70405101	70405101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	123	434	0	ENST00000373644.4:c.2615C>T	p.Pro872Leu	p.P872L	ENST00000373644	NM_030625.2	872	cCc/cTc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45796886	45796886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	185	560	0	ENST00000372115.3:c.1402C>T	p.His468Tyr	p.H468Y	ENST00000372115	NM_001048171.1	468	Cac/Tac																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18800901	18800901	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	44	314	0	ENST00000266497.5:c.4277G>T	p.Arg1426Leu	p.R1426L	ENST00000266497		1426	cGa/cTa																																																																															
MGA	23269	MSKCC	GRCh37	15	42054048	42054048	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	36	213	0	ENST00000219905.7:c.7510G>T	p.Gly2504Cys	p.G2504C	ENST00000219905	NM_001164273.1	2504	Ggt/Tgt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420318	88420318	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	150	413	1	ENST00000360948.2:c.2368G>T	p.Glu790Ter	p.E790*	ENST00000360948	NM_001012338.2	790	Gag/Tag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81941300	81941300	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	172	560	0	ENST00000359376.3:c.1478G>T	p.Arg493Leu	p.R493L	ENST00000359376	NM_002661.3	493	cGg/cTg																																																																															
CD79B	974	MSKCC	GRCh37	17	62006606	62006606	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	145	649	0	ENST00000392795.3:c.673G>C	p.Glu225Gln	p.E225Q	ENST00000392795	NM_001039933.1	225	Gag/Cag																																																																															
CD79B	974	MSKCC	GRCh37	17	62006808	62006808	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	246	754	0	ENST00000392795.3:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000392795	NM_001039933.1	194	Gat/Tat																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39617724	39617724	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	88	284	0	ENST00000262039.4:c.1908G>T	p.Lys636Asn	p.K636N	ENST00000262039	NM_002647.2	636	aaG/aaT																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29120973	29120973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	120	354	0	ENST00000328354.6:c.584G>C	p.Arg195Thr	p.R195T	ENST00000328354	NM_007194.3	195	aGa/aCa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670621	134670621	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	211	732	0	ENST00000398015.3:c.532C>G	p.Gln178Glu	p.Q178E	ENST00000398015	NM_004441.4	178	Cag/Gag																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1920140	1920140	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	221	649	0	ENST00000382891.5:c.1200G>T	p.Arg400Ser	p.R400S	ENST00000382891	NM_133335.3	400	agG/agT																																																																															
RAD21	5885	MSKCC	GRCh37	8	117866565	117866565	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	76	362	0	ENST00000297338.2:c.1080G>C	p.Leu360Phe	p.L360F	ENST00000297338	NM_006265.2	360	ttG/ttC																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740421	145740421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	352	958	0	ENST00000428558.2:c.1519G>A	p.Gly507Ser	p.G507S	ENST00000428558	NM_004260.3	507	Ggc/Agc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814804	139814804	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	263	867	0	ENST00000247668.2:c.797C>G	p.Ser266Ter	p.S266*	ENST00000247668	NM_021138.3	266	tCa/tGa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226979	53226979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	232	367	0	ENST00000375401.3:c.2596G>T	p.Ala866Ser	p.A866S	ENST00000375401	NM_004187.3	866	Gcc/Tcc																																																																															
MED12	9968	MSKCC	GRCh37	X	70355010	70355010	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	286	363	0	ENST00000374080.3:c.4932G>T	p.Gln1644His	p.Q1644H	ENST00000374080		1644	caG/caT																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692977	89692977	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	49	575	0	ENST00000371953.3:c.461T>G	p.Phe154Cys	p.F154C	ENST00000371953	NM_000314.4	154	tTc/tGc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18658225	18658225	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0048587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	42	576	0	ENST00000266497.5:c.3031-1G>T		p.X1011_splice	ENST00000266497		1011																																																																																
SH2B3	10019	MSKCC	GRCh37	12	111885247	111885247	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	59	796	0	ENST00000341259.2:c.1135C>G	p.Gln379Glu	p.Q379E	ENST00000341259	NM_005475.2	379	Cag/Gag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89849512	89849512	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0048587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	96	581	0	ENST00000389301.3:c.1471-2A>G		p.X491_splice	ENST00000389301	NM_000135.2	491																																																																																
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	83	898	1	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30323856	30323856	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	60	435	1	ENST00000322652.5:c.1834G>T	p.Glu612Ter	p.E612*	ENST00000322652	NM_015355.2	612	Gaa/Taa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47677876	47677876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	125	606	0	ENST00000347630.2:c.989C>T	p.Ser330Leu	p.S330L	ENST00000347630	NM_001007230.1	330	tCg/tTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11169543	11169543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	73	711	0	ENST00000344626.4:c.4613C>T	p.Thr1538Ile	p.T1538I	ENST00000344626	NM_003072.3	1538	aCc/aTc																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873410	136873410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	36	568	0	ENST00000241393.3:c.88C>T	p.Arg30Cys	p.R30C	ENST00000241393	NM_003467.2	30	Cgt/Tgt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46267912	46267912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	66	678	1	ENST00000371998.3:c.2673G>A	p.Met891Ile	p.M891I	ENST00000371998		891	atG/atA																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31409419	31409419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	95	553	0	ENST00000344624.3:c.3688A>G	p.Ile1230Val	p.I1230V	ENST00000344624		1230	Att/Gtt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956612	93956612	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	48	540	0	ENST00000369303.4:c.2624del	p.Lys875ArgfsTer12	p.K875Rfs*12	ENST00000369303	NM_004440.3	875	aAg/ag																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371968	55371968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	50	382	0	ENST00000297316.4:c.658C>A	p.Pro220Thr	p.P220T	ENST00000297316	NM_022454.3	220	Ccc/Acc																																																																															
MED12	9968	MSKCC	GRCh37	X	70339311	70339311	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	46	615	0	ENST00000374080.3:c.188G>T	p.Ser63Ile	p.S63I	ENST00000374080		63	aGc/aTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	433	582	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	219	1059	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130353	11130353	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	64	972	0	ENST00000344626.4:c.2592C>G	p.Ile864Met	p.I864M	ENST00000344626	NM_003072.3	864	atC/atG																																																																															
RAD50	10111	MSKCC	GRCh37	5	131924456	131924456	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	83	540	0	ENST00000265335.6:c.1129C>G	p.Gln377Glu	p.Q377E	ENST00000265335		377	Cag/Gag																																																																															
AGO2	27161	MSKCC	GRCh37	8	141559308	141559308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	121	1000	3	ENST00000220592.5:c.1493C>T	p.Ala498Val	p.A498V	ENST00000220592	NM_012154.3	498	gCg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106681	27106681	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	63	908	0	ENST00000324856.7:c.6292G>T	p.Glu2098Ter	p.E2098*	ENST00000324856	NM_006015.4	2098	Gaa/Taa																																																																															
SMYD3	64754	MSKCC	GRCh37	1	245912928	245912928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	90	607	0	ENST00000388985.4:c.1224C>A	p.His408Gln	p.H408Q	ENST00000388985		408	caC/caA																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109783	115109783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	274	940	0	ENST00000257566.3:c.2095C>A	p.Leu699Ile	p.L699I	ENST00000257566	NM_016569.3	699	Ctc/Atc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90633864	90633864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	96	824	1	ENST00000330062.3:c.220C>T	p.His74Tyr	p.H74Y	ENST00000330062	NM_002168.2	74	Cac/Tac																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533766	63533766	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	148	886	1	ENST00000307078.5:c.1388G>T	p.Arg463Leu	p.R463L	ENST00000307078	NM_004655.3	463	cGc/cTc																																																																															
INHA	3623	MSKCC	GRCh37	2	220439460	220439460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	99	852	0	ENST00000243786.2:c.313G>A	p.Glu105Lys	p.E105K	ENST00000243786	NM_002191.3	105	Gag/Aag																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62323169	62323169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	138	728	0	ENST00000508582.2:c.2703G>T	p.Lys901Asn	p.K901N	ENST00000508582		901	aaG/aaT																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637649	176637655	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTCTC	CTCTCTC	-			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	102	777	0	ENST00000439151.2:c.2249_2255del	p.Ala750ValfsTer16	p.A750Vfs*16	ENST00000439151	NM_022455.4	750	gCTCTCTCt/gt																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194592	29194592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	129	1115	1	ENST00000240100.2:c.1136G>A	p.Ser379Asn	p.S379N	ENST00000240100	NM_001394.6	379	aGc/aAc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426749	47426749	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	117	937	0	ENST00000377045.4:c.994G>T	p.Asp332Tyr	p.D332Y	ENST00000377045	NM_001654.4	332	Gat/Tat																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	85	451	0	ENST00000347630.2:c.393G>C	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgC																																																																															
TERT	7015	MSKCC	GRCh37	5	1255456	1255456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	16	582	1	ENST00000310581.5:c.3103G>A	p.Val1035Ile	p.V1035I	ENST00000310581	NM_198253.2	1035	Gtc/Atc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026813	71026813	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	40	202	0	ENST00000318789.4:c.1409A>G	p.Tyr470Cys	p.Y470C	ENST00000318789	NM_032682.5	470	tAt/tGt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670253	134670253	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	31	463	0	ENST00000398015.3:c.164T>A	p.Ile55Asn	p.I55N	ENST00000398015	NM_004441.4	55	aTc/aAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851873	134851873	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	88	510	0	ENST00000398015.3:c.1279A>G	p.Ile427Val	p.I427V	ENST00000398015	NM_004441.4	427	Atc/Gtc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781041	135781041	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	52	550	0	ENST00000298552.3:c.1924T>G	p.Ser642Ala	p.S642A	ENST00000298552	NM_001162426.1	642	Tct/Gct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	138	347	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450301	50450301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	83	551	0	ENST00000331340.3:c.485G>A	p.Arg162Gln	p.R162Q	ENST00000331340	NM_006060.4	162	cGg/cAg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852392	63852392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	37	566	0	ENST00000279873.7:c.3170C>T	p.Ala1057Val	p.A1057V	ENST00000279873	NM_032199.2	1057	gCg/gTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114901077	114901077	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0048481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	132	300	0	ENST00000543371.1:c.685+2T>G		p.X229_splice	ENST00000543371	NM_001198531.1	229																																																																																
PRKD1	5587	MSKCC	GRCh37	14	30093410	30093410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	76	395	0	ENST00000331968.5:c.1853G>A	p.Arg618Gln	p.R618Q	ENST00000331968	NM_002742.2	618	cGa/cAa																																																																															
EP300	2033	MSKCC	GRCh37	22	41572509	41572509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	136	736	0	ENST00000263253.7:c.5038C>T	p.Arg1680Cys	p.R1680C	ENST00000263253	NM_001429.3	1680	Cgc/Tgc																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156720	20156720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	38	166	1	ENST00000379607.5:c.37C>T	p.Arg13Cys	p.R13C	ENST00000379607	NM_001412.3	13	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047182-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			92	29	327	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986567	36986568	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047182-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			169	116	577	1	ENST00000354822.5:c.1121dup	p.Ser375IlefsTer64	p.S375Ifs*64	ENST00000354822	NM_001079668.2	374	gta/gtTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048095-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			386	120	267	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048095-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			357	227	299	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048095-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	661	461	0	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857148	9857148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048095-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			388	129	274	2	ENST00000330684.3:c.4253G>A	p.Gly1418Asp	p.G1418D	ENST00000330684	NM_001134407.1	1418	gGc/gAc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971375	13971375	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0048095-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	62	244	0	ENST00000405192.2:c.555-1G>C		p.X185_splice	ENST00000405192	NM_001163147.1	185																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72992288	72992288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048095-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			486	241	586	0	ENST00000268489.5:c.1757G>A	p.Arg586Lys	p.R586K	ENST00000268489	NM_006885.3	586	aGg/aAg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39600606	39600606	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048095-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			158	69	152	0	ENST00000262039.4:c.1421A>T	p.Asp474Val	p.D474V	ENST00000262039	NM_002647.2	474	gAt/gTt																																																																															
BTK	695	MSKCC	GRCh37	X	100617187	100617187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048095-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			182	179	195	0	ENST00000308731.7:c.562C>T	p.Leu188Phe	p.L188F	ENST00000308731	NM_000061.2	188	Ctt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	168	590	3	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464881	120464881	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	54	295	0	ENST00000256646.2:c.5191G>T	p.Gly1731Ter	p.G1731*	ENST00000256646	NM_024408.3	1731	Gga/Tga																																																																															
SESN2	83667	MSKCC	GRCh37	1	28607311	28607311	+	stop_lost	Nonstop_Mutation	SNP	T	T	A			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	45	451	0	ENST00000253063.3:c.1441T>A	p.Ter481ArgextTer61	p.*481Rext*61	ENST00000253063	NM_031459.4	481	Tga/Aga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120483295	120483295	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	27	279	0	ENST00000256646.2:c.3066C>A	p.Cys1022Ter	p.C1022*	ENST00000256646	NM_024408.3	1022	tgC/tgA																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724645	112724645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	37	364	0	ENST00000369452.4:c.529C>T	p.Arg177Trp	p.R177W	ENST00000369452	NM_007373.3	177	Cgg/Tgg																																																																															
WT1	7490	MSKCC	GRCh37	11	32417946	32417946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	67	354	0	ENST00000332351.3:c.1106G>T	p.Arg369Leu	p.R369L	ENST00000332351	NM_024426.4	369	cGa/cTa																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873200	136873200	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	85	291	0	ENST00000241393.3:c.298del	p.Ala100GlnfsTer68	p.A100Qfs*68	ENST00000241393	NM_003467.2	100	Gca/ca																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566878	212566878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	65	180	0	ENST00000342788.4:c.1303C>T	p.Leu435Phe	p.L435F	ENST00000342788	NM_005235.2	435	Ctt/Ttt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662442	227662442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	160	580	0	ENST00000305123.5:c.1013G>T	p.Arg338Leu	p.R338L	ENST00000305123	NM_005544.2	338	cGc/cTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735462	40735462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	73	611	0	ENST00000373198.4:c.3411G>T	p.Glu1137Asp	p.E1137D	ENST00000373198	NM_133170.3	1137	gaG/gaT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743842	40743842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	36	352	0	ENST00000373198.4:c.3153G>T	p.Gln1051His	p.Q1051H	ENST00000373198	NM_133170.3	1051	caG/caT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944533	40944533	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	47	431	0	ENST00000373198.4:c.1969del	p.Ser657AlafsTer12	p.S657Afs*12	ENST00000373198	NM_133170.3	657	Agc/gc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651383	52651383	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	58	369	0	ENST00000394830.3:c.1713delT	p.Ile571MetfsTer16	p.I571Mfs*16	ENST00000394830	NM_018313.4	571	atT/at																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027100	71027109	+	frameshift_variant	Frame_Shift_Del	DEL	GGTCGTTGGA	GGTCGTTGGA	-			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	82	500	0	ENST00000318789.4:c.1218_1227del	p.Pro407GlnfsTer5	p.P407Qfs*5	ENST00000318789	NM_032682.5	406	acTCCAACGACC/ac																																																																															
ATR	545	MSKCC	GRCh37	3	142278180	142278180	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	44	338	0	ENST00000350721.4:c.1645A>C	p.Ser549Arg	p.S549R	ENST00000350721	NM_001184.3	549	Agt/Cgt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1920264	1920264	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	57	524	0	ENST00000382891.5:c.1324A>G	p.Lys442Glu	p.K442E	ENST00000382891	NM_133335.3	442	Aag/Gag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721833	176721842	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTTCATGG	AAGTTCATGG	-			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	29	451	1	ENST00000439151.2:c.7464_7473del	p.Ser2489LeufsTer86	p.S2489Lfs*86	ENST00000439151	NM_022455.4	2488	tcAAGTTCATGG/tc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450358	50450358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	105	444	2	ENST00000331340.3:c.542C>T	p.Ala181Val	p.A181V	ENST00000331340	NM_006060.4	181	gCc/gTc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509041	106509041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	74	521	0	ENST00000359195.3:c.1035C>A	p.Asp345Glu	p.D345E	ENST00000359195	NM_002649.2	345	gaC/gaA																																																																															
MED12	9968	MSKCC	GRCh37	X	70349643	70349643	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	113	555	0	ENST00000374080.3:c.3805T>A	p.Ser1269Thr	p.S1269T	ENST00000374080		1269	Tct/Act																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115750	8115750	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	236	575	0	ENST00000346208.3:c.1096C>T	p.Arg366Ter	p.R366*	ENST00000346208		366	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs786201057		P-0048302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	293	699	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																															
SUFU	51684	MSKCC	GRCh37	10	104263941	104263941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	62	133	0	ENST00000369902.3:c.32G>A	p.Gly11Asp	p.G11D	ENST00000369902	NM_016169.3	11	gGc/gAc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871147	12871148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	181	369	0	ENST00000228872.4:c.375dup	p.Glu126Ter	p.E126*	ENST00000228872	NM_004064.3	125	tct/tcTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829463	72829471	+	inframe_deletion	In_Frame_Del	DEL	TCCATGGCA	TCCATGGCA	-			P-0048302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	297	743	1	ENST00000268489.5:c.7110_7118del	p.Asp2370_Met2372del	p.D2370_M2372del	ENST00000268489	NM_006885.3	2370	gaTGCCATGGAa/gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	194	304	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161677	56161678	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0048321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	206	350	0	ENST00000399503.3:c.1175dup	p.Tyr392Ter	p.Y392*	ENST00000399503	NM_005921.1	392	tat/tAat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178550	56178550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	113	174	0	ENST00000399503.3:c.3523C>T	p.Gln1175Ter	p.Q1175*	ENST00000399503	NM_005921.1	1175	Caa/Taa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419920	152419920	+	protein_altering_variant	In_Frame_Ins	INS	T	T	AGGG			P-0048321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	126	607	0	ENST00000206249.3:c.1607delinsAGGG	p.Leu536delinsGlnGly	p.L536delinsQG	ENST00000206249	NM_000125.3	536	cTc/cAGGGc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	33	363	0				ENST00000310581	NM_198253.2																																																																																	
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0048356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	68	354	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0048356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	28	246	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100451	8100451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	66	837	0	ENST00000346208.3:c.425C>T	p.Ser142Leu	p.S142L	ENST00000346208		142	tCg/tTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508823	106508823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	97	563	2	ENST00000359195.3:c.817C>T	p.Arg273Cys	p.R273C	ENST00000359195	NM_002649.2	273	Cgc/Tgc																																																																															
BRAF	673	MSKCC	GRCh37	7	140477861	140477861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	22	417	0	ENST00000288602.6:c.1447A>G	p.Lys483Glu	p.K483E	ENST00000288602	NM_004333.4	483	Aaa/Gaa																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748296	41748296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	86	751	0	ENST00000226382.2:c.473G>A	p.Arg158His	p.R158H	ENST00000226382	NM_003924.3	158	cGc/cAc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81941371	81941371	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	85	486	0	ENST00000359376.3:c.1549G>T	p.Val517Leu	p.V517L	ENST00000359376	NM_002661.3	517	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576716	7576923	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGCCATTGTCTTTGAGGCATCACTGCCCCCTGATGGCAAATGCCCCAATTGCAGGTAAAACAGTCAAGAAGAAAACGGCATTTTGAGTGTTAGACTGGAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCA	GAGCCATTGTCTTTGAGGCATCACTGCCCCCTGATGGCAAATGCCCCAATTGCAGGTAAAACAGTCAAGAAGAAAACGGCATTTTGAGTGTTAGACTGGAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCA	-			P-0048356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	50	366	1	ENST00000269305.4:c.923_993+137del		p.X308_splice	ENST00000269305	NM_001126112.2	308																																																																																
APC	324	MSKCC	GRCh37	5	112175525	112175526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAAT			P-0048356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	21	308	0	ENST00000257430.4:c.4236_4239dup	p.Val1414AsnfsTer10	p.V1414Nfs*10	ENST00000257430	NM_000038.5	1412	gga/gGAATga																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932140	39932140	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	48	297	0	ENST00000378444.4:c.2459del	p.Asn820ThrfsTer36	p.N820Tfs*36	ENST00000378444	NM_001123385.1	820	aAc/ac																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274911	41274911	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	204	332	0	ENST00000349496.5:c.1161T>G	p.Asn387Lys	p.N387K	ENST00000349496	NM_001904.3	387	aaT/aaG																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519963		P-0048373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	23	215	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972649	25972649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	42	322	1	ENST00000435504.4:c.1776G>T	p.Gln592His	p.Q592H	ENST00000435504		592	caG/caT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40979338	40979338	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	194	434	0	ENST00000373198.4:c.1795C>A	p.Pro599Thr	p.P599T	ENST00000373198	NM_133170.3	599	Cca/Aca																																																																															
MET	4233	MSKCC	GRCh37	7	116380051	116380052	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0048373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	102	412	1	ENST00000397752.3:c.1440_1441delinsAA	p.Leu481Met	p.L481M	ENST00000397752	NM_000245.2	480	ctCCtg/ctAAtg																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317440	1317440	+	downstream_gene_variant	3'Flank	SNP	A	A	T			P-0048373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	100	470	1				ENST00000381566																																																																																		
TP53	7157	MSKCC	GRCh37	17	7578486	7578491	+	frameshift_variant	Frame_Shift_Del	DEL	ATCAAC	ATCAAC	G			P-0048373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	487	701	0	ENST00000269305.4:c.439_444delinsC	p.Val147LeufsTer32	p.V147Lfs*32	ENST00000269305	NM_001126112.2	147	GTTGAT/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0048375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	25	275	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0048375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	21	218	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	33	323	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0048375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	115	548	0	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174502	112174502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	28	205	0	ENST00000257430.4:c.3211C>T	p.Gln1071Ter	p.Q1071*	ENST00000257430	NM_000038.5	1071	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175642	112175642	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	40	237	1	ENST00000257430.4:c.4351G>T	p.Glu1451Ter	p.E1451*	ENST00000257430	NM_000038.5	1451	Gaa/Taa																																																																															
NBN	4683	MSKCC	GRCh37	8	90982653	90982653	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	54	233	0	ENST00000265433.3:c.835C>T	p.Gln279Ter	p.Q279*	ENST00000265433	NM_002485.4	279	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120130	70120130	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	74	175	0	ENST00000245479.2:c.1132C>T	p.Gln378Ter	p.Q378*	ENST00000245479	NM_000346.3	378	Cag/Tag																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981212	201981212	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	277	567	0	ENST00000359651.3:c.292del	p.Asp98MetfsTer57	p.D98Mfs*57	ENST00000359651		97	atG/at																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64132896	64132896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	111	580	0	ENST00000334205.4:c.1030C>T	p.Pro344Ser	p.P344S	ENST00000334205	NM_003942.2	344	Ccc/Tcc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23637674	23637674	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	45	380	0	ENST00000261584.4:c.2631G>C	p.Trp877Cys	p.W877C	ENST00000261584	NM_024675.3	877	tgG/tgC																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822452	72822456	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTA	CTTTA	-			P-0048375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	107	604	0	ENST00000268489.5:c.9719_9723del	p.Val3240GlyfsTer189	p.V3240Gfs*189	ENST00000268489	NM_006885.3	3240	gTAAAG/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	27	294	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	84	565	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	33	153	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805441	46805441	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	84	579	0	ENST00000290295.7:c.515G>T	p.Trp172Leu	p.W172L	ENST00000290295	NM_006361.5	172	tGg/tTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089622	27089623	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	83	560	0	ENST00000324856.7:c.2579dup	p.His860GlnfsTer12	p.H860Qfs*12	ENST00000324856	NM_006015.4	860	cac/cAac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0048379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	103	359	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679216	88679216	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs187007070		P-0048379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	38	500	1	ENST00000360948.2:c.821C>T	p.Thr274Met	p.T274M	ENST00000360948	NM_001012338.2	274	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0048379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	314	574	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120407	70120408	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	263	655	0	ENST00000245479.2:c.1413dup	p.Ala472ArgfsTer106	p.A472Rfs*106	ENST00000245479	NM_000346.3	470	aac/aaCc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672758	86672758	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	62	260	0	ENST00000274376.6:c.2245C>T	p.Arg749Ter	p.R749*	ENST00000274376	NM_002890.2	749	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174349	112174349	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	50	208	0	ENST00000257430.4:c.3058G>T	p.Glu1020Ter	p.E1020*	ENST00000257430	NM_000038.5	1020	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	62	247	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
AR	367	MSKCC	GRCh37	X	66765746	66765746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	57	363	0	ENST00000374690.3:c.758C>T	p.Ala253Val	p.A253V	ENST00000374690	NM_000044.3	253	gCg/gTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0048386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	15	322	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720808	89720808	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	37	229	0	ENST00000371953.3:c.959T>C	p.Leu320Ser	p.L320S	ENST00000371953	NM_000314.4	320	tTa/tCa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120645	115120646	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0048386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	132	680	0	ENST00000257566.3:c.359_360dup	p.Thr121AlafsTer19	p.T121Afs*19	ENST00000257566	NM_016569.3	120	-/GC																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885921	111885921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	23	562	0	ENST00000341259.2:c.1543C>A	p.Leu515Ile	p.L515I	ENST00000341259	NM_005475.2	515	Ctc/Atc																																																																															
CDH1	999	MSKCC	GRCh37	16	68862075	68862075	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0048386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	62	369	0	ENST00000261769.5:c.2165-2A>G		p.X722_splice	ENST00000261769	NM_004360.3	722																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	105	326	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922364	178922364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	108	330	0	ENST00000263967.3:c.1133G>T	p.Cys378Phe	p.C378F	ENST00000263967	NM_006218.2	378	tGt/tTt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738304	145738304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	86	886	0	ENST00000428558.2:c.2681G>A	p.Arg894Lys	p.R894K	ENST00000428558	NM_004260.3	894	aGa/aAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577600	7577601	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0048392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	161	486	0	ENST00000269305.4:c.680_681del	p.Ser227Ter	p.S227*	ENST00000269305	NM_001126112.2	227	tCT/t																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221481	36221481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	63	743	1	ENST00000222270.7:c.5240C>T	p.Ser1747Leu	p.S1747L	ENST00000222270	NM_014727.1	1747	tCg/tTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339153	65339153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	52	454	0	ENST00000342505.4:c.383G>A	p.Arg128His	p.R128H	ENST00000342505	NM_002227.2	128	cGt/cAt																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073938	8073938	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	54	406	0	ENST00000377482.5:c.721C>T	p.Gln241Ter	p.Q241*	ENST00000377482	NM_018948.3	241	Cag/Tag																																																																															
ALK	238	MSKCC	GRCh37	2	30143416	30143416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	156	623	1	ENST00000389048.3:c.110C>T	p.Pro37Leu	p.P37L	ENST00000389048	NM_004304.4	37	cCg/cTg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170009715	170009717	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0048392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	27	281	0	ENST00000295797.4:c.1280_1282del	p.Gly427del	p.G427del	ENST00000295797	NM_002740.5	426	aGAGga/aga																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739747	145739747	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0048392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	106	666	0	ENST00000428558.2:c.1705-1G>C		p.X569_splice	ENST00000428558	NM_004260.3	569																																																																																
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0048394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	183	587	1	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903718	114903718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	139	451	0	ENST00000543371.1:c.722C>T	p.Pro241Leu	p.P241L	ENST00000543371	NM_001198531.1	241	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112175223	112175224	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGAACTAGGTCAGCTGAAGATC			P-0048394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	42	208	0	ENST00000257430.4:c.3933_3955dup	p.Pro1319LeufsTer10	p.P1319Lfs*10	ENST00000257430	NM_000038.5	1311	att/atTGGAACTAGGTCAGCTGAAGATCt																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816539	32816539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	169	625	0	ENST00000354258.4:c.1636C>T	p.Pro546Ser	p.P546S	ENST00000354258	NM_000593.5	546	Cct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0048431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	347	626	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0048431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	147	313	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575195	48575195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	112	218	0	ENST00000342988.3:c.389C>T	p.Pro130Leu	p.P130L	ENST00000342988	NM_005359.5	130	cCa/cTa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120675	115120675	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	198	685	0	ENST00000257566.3:c.331G>T	p.Glu111Ter	p.E111*	ENST00000257566	NM_016569.3	111	Gaa/Taa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266002	41266229	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTC	GTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTC	-			P-0048431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	31	162	0	ENST00000349496.5:c.14-15_226del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
TEK	7010	MSKCC	GRCh37	9	27180258	27180258	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	230	455	0	ENST00000380036.4:c.922G>C	p.Gly308Arg	p.G308R	ENST00000380036	NM_000459.3	308	Ggg/Cgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0048434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	25	336	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0048434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	16	334	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784865	9784865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	109	834	0	ENST00000377346.4:c.2868C>A	p.Phe956Leu	p.F956L	ENST00000377346	NM_005026.3	956	ttC/ttA																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188525	11188525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	133	487	0	ENST00000361445.4:c.5896C>T	p.Arg1966Trp	p.R1966W	ENST00000361445	NM_004958.3	1966	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259486	16259486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	61	446	1	ENST00000375759.3:c.6751G>A	p.Ala2251Thr	p.A2251T	ENST00000375759	NM_015001.2	2251	Gca/Aca																																																																															
SDHB	6390	MSKCC	GRCh37	1	17371320	17371320	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	44	584	1	ENST00000375499.3:c.136C>T	p.Arg46Ter	p.R46*	ENST00000375499	NM_003000.2	46	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087503	27087503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	381	923	2	ENST00000324856.7:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000324856	NM_006015.4	693	Cga/Tga																																																																															
SESN2	83667	MSKCC	GRCh37	1	28601520	28601520	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	84	761	0	ENST00000253063.3:c.1205G>T	p.Gly402Val	p.G402V	ENST00000253063	NM_031459.4	402	gGc/gTc																																																																															
STK40	83931	MSKCC	GRCh37	1	36808981	36808981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	123	722	1	ENST00000373129.3:c.1073C>T	p.Ala358Val	p.A358V	ENST00000373129	NM_032017.1	358	gCg/gTg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932074	36932074	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	180	746	0	ENST00000361632.4:c.2395A>G	p.Thr799Ala	p.T799A	ENST00000361632		799	Acc/Gcc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46509508	46509508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	75	462	0	ENST00000262741.5:c.1223G>A	p.Ser408Asn	p.S408N	ENST00000262741	NM_003629.3	408	aGc/aAc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521487	46521487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	249	479	1	ENST00000262741.5:c.921G>T	p.Lys307Asn	p.K307N	ENST00000262741	NM_003629.3	307	aaG/aaT																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46527637	46527637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	69	493	0	ENST00000262741.5:c.728G>A	p.Arg243Gln	p.R243Q	ENST00000262741	NM_003629.3	243	cGa/cAa																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46527713	46527713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	27	318	0	ENST00000262741.5:c.652G>A	p.Ala218Thr	p.A218T	ENST00000262741	NM_003629.3	218	Gct/Act																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46715785	46715785	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	201	463	0	ENST00000371975.4:c.204T>G	p.Ser68Arg	p.S68R	ENST00000371975	NM_003579.3	68	agT/agG																																																																															
JAK1	3716	MSKCC	GRCh37	1	65310563	65310563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	43	444	1	ENST00000342505.4:c.2125G>T	p.Asp709Tyr	p.D709Y	ENST00000342505	NM_002227.2	709	Gac/Tac																																																																															
JAK1	3716	MSKCC	GRCh37	1	65323452	65323452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	64	495	0	ENST00000342505.4:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000342505	NM_002227.2	449	Gcc/Acc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65332599	65332599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	39	323	0	ENST00000342505.4:c.940G>A	p.Glu314Lys	p.E314K	ENST00000342505	NM_002227.2	314	Gaa/Aaa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65332823	65332823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	27	283	0	ENST00000342505.4:c.716G>A	p.Arg239Gln	p.R239Q	ENST00000342505	NM_002227.2	239	cGg/cAg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78428511	78428511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	146	433	1	ENST00000370768.2:c.1288C>T	p.Arg430Cys	p.R430C	ENST00000370768	NM_003902.3	430	Cgt/Tgt																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78432754	78432754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	83	350	0	ENST00000370768.2:c.322C>T	p.Pro108Ser	p.P108S	ENST00000370768	NM_003902.3	108	Cca/Tca																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115263336	115263336	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	56	525	0	ENST00000438362.2:c.2014G>A	p.Asp672Asn	p.D672N	ENST00000438362	NM_001242891.1	672	Gat/Aat																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115280616	115280616	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	135	539	0	ENST00000438362.2:c.415G>T	p.Glu139Ter	p.E139*	ENST00000438362	NM_001242891.1	139	Gaa/Taa																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117695784	117695784	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147263365		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	64	473	0	ENST00000369458.3:c.653C>T	p.Thr218Met	p.T218M	ENST00000369458	NM_024626.3	218	aCg/aTg																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551841	150551841	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	51	244	1	ENST00000369026.2:c.166G>T	p.Val56Leu	p.V56L	ENST00000369026	NM_021960.4	56	Gtg/Ttg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845433	156845433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	302	995	0	ENST00000524377.1:c.1476G>T	p.Glu492Asp	p.E492D	ENST00000524377	NM_002529.3	492	gaG/gaT																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849143	156849143	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775191394		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	125	922	4	ENST00000524377.1:c.2035G>A	p.Asp679Asn	p.D679N	ENST00000524377	NM_002529.3	679	Gac/Aac																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724542	162724542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	93	566	0	ENST00000367921.3:c.314G>A	p.Arg105His	p.R105H	ENST00000367921	NM_006182.2	105	cGc/cAc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163317623	163317623	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747173543		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	32	253	0	ENST00000271452.3:c.1019C>T	p.Ser340Leu	p.S340L	ENST00000271452	NM_145697.2	340	tCg/tTg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193218892	193218892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	34	236	0	ENST00000367435.3:c.1450C>T	p.Arg484Cys	p.R484C	ENST00000367435	NM_024529.4	484	Cgt/Tgt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206650027	206650027	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201666998		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	63	545	0	ENST00000367120.3:c.547G>A	p.Asp183Asn	p.D183N	ENST00000367120	NM_014002.3	183	Gac/Aac																																																																															
IL10	3586	MSKCC	GRCh37	1	206945625	206945625	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	64	425	0	ENST00000423557.1:c.156G>T	p.Lys52Asn	p.K52N	ENST00000423557	NM_000572.2	52	aaG/aaT																																																																															
IL10	3586	MSKCC	GRCh37	1	206945665	206945665	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	53	599	0	ENST00000423557.1:c.116A>C	p.Asn39Thr	p.N39T	ENST00000423557	NM_000572.2	39	aAc/aCc																																																																															
PARP1	142	MSKCC	GRCh37	1	226567664	226567664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	96	697	1	ENST00000366794.5:c.1502C>T	p.Ala501Val	p.A501V	ENST00000366794	NM_001618.3	501	gCt/gTt																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612810	228612810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	126	801	1	ENST00000366696.1:c.217C>T	p.Arg73Cys	p.R73C	ENST00000366696	NM_003493.2	73	Cgc/Tgc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243675668	243675668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	26	249	0	ENST00000263826.5:c.1312G>A	p.Glu438Lys	p.E438K	ENST00000263826	NM_005465.4	438	Gaa/Aaa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716229	243716229	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	56	471	0	ENST00000263826.5:c.965A>G	p.Asp322Gly	p.D322G	ENST00000263826	NM_005465.4	322	gAc/gGc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243800950	243800950	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	48	357	0	ENST00000263826.5:c.524C>A	p.Ala175Asp	p.A175D	ENST00000263826	NM_005465.4	175	gCt/gAt																																																																															
RET	5979	MSKCC	GRCh37	10	43598038	43598038	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	95	905	0	ENST00000355710.3:c.586T>G	p.Leu196Val	p.L196V	ENST00000355710	NM_020975.4	196	Ttg/Gtg																																																																															
RET	5979	MSKCC	GRCh37	10	43601986	43601986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1186	145	1063	1	ENST00000355710.3:c.1030G>A	p.Gly344Ser	p.G344S	ENST00000355710	NM_020975.4	344	Ggc/Agc																																																																															
RET	5979	MSKCC	GRCh37	10	43606892	43606892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	279	1126	0	ENST00000355710.3:c.1501C>A	p.Leu501Ile	p.L501I	ENST00000355710	NM_020975.4	501	Ctt/Att																																																																															
RET	5979	MSKCC	GRCh37	10	43609994	43609994	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148935214		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	100	1025	1	ENST00000355710.3:c.1946C>T	p.Ser649Leu	p.S649L	ENST00000355710	NM_020975.4	649	tCg/tTg																																																																															
RET	5979	MSKCC	GRCh37	10	43622039	43622039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	152	419	0	ENST00000355710.3:c.3056C>T	p.Ala1019Val	p.A1019V	ENST00000355710	NM_020975.4	1019	gCg/gTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70333547	70333547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	45	530	0	ENST00000373644.4:c.1452G>T	p.Glu484Asp	p.E484D	ENST00000373644	NM_030625.2	484	gaG/gaT																																																																															
TET1	80312	MSKCC	GRCh37	10	70446279	70446279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	80	511	1	ENST00000373644.4:c.5219G>A	p.Arg1740His	p.R1740H	ENST00000373644	NM_030625.2	1740	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685294	89685294	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	62	175	0	ENST00000371953.3:c.189C>A	p.Asn63Lys	p.N63K	ENST00000371953	NM_000314.4	63	aaC/aaA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	116	469	1	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692918	89692918	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	122	495	0	ENST00000371953.3:c.402G>T	p.Met134Ile	p.M134I	ENST00000371953	NM_000314.4	134	atG/atT																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724144	112724144	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	22	304	0	ENST00000369452.4:c.28G>T	p.Asp10Tyr	p.D10Y	ENST00000369452	NM_007373.3	10	Gac/Tac																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123298139	123298139	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	58	455	0	ENST00000358487.5:c.715T>C	p.Ser239Pro	p.S239P	ENST00000358487	NM_000141.4	239	Tcc/Ccc																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14300921	14300921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	42	327	0	ENST00000256196.4:c.577G>A	p.Glu193Lys	p.E193K	ENST00000256196		193	Gaa/Aaa																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741858	17741858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	32	222	0	ENST00000250003.3:c.529G>A	p.Ala177Thr	p.A177T	ENST00000250003	NM_002478.4	177	Gcc/Acc																																																																															
WT1	7490	MSKCC	GRCh37	11	32413577	32413577	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1037084691		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	46	462	0	ENST00000332351.3:c.1373G>A	p.Arg458Gln	p.R458Q	ENST00000332351	NM_024426.4	458	cGa/cAa																																																																															
WT1	7490	MSKCC	GRCh37	11	32449584	32449584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	119	1033	2	ENST00000332351.3:c.790C>T	p.Pro264Ser	p.P264S	ENST00000332351	NM_024426.4	264	Ccg/Tcg																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205491	61205491	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	53	390	0	ENST00000301761.2:c.276A>C	p.Glu92Asp	p.E92D	ENST00000301761	NM_017841.2	92	gaA/gaC																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588238	69588238	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	129	573	0	ENST00000168712.1:c.460G>T	p.Glu154Ter	p.E154*	ENST00000168712	NM_002007.2	154	Gag/Tag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71945335	71945335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	199	844	0	ENST00000298229.2:c.2223G>T	p.Lys741Asn	p.K741N	ENST00000298229	NM_001567.3	741	aaG/aaT																																																																															
PAK1	5058	MSKCC	GRCh37	11	77103478	77103478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	44	349	0	ENST00000356341.3:c.88G>A	p.Asp30Asn	p.D30N	ENST00000356341	NM_002576.4	30	Gat/Aat																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94153304	94153304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	36	406	0	ENST00000323929.3:c.2114G>T	p.Arg705Ile	p.R705I	ENST00000323929	NM_005591.3	705	aGa/aTa																																																																															
PGR	5241	MSKCC	GRCh37	11	100922190	100922190	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	68	362	0	ENST00000325455.5:c.2322G>T	p.Gln774His	p.Q774H	ENST00000325455	NM_001202474.3	774	caG/caT																																																																															
YAP1	10413	MSKCC	GRCh37	11	102076740	102076740	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	84	675	3	ENST00000282441.5:c.919C>T	p.Arg307Ter	p.R307*	ENST00000282441	NM_001130145.2	307	Cga/Tga																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195335	102195335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	55	344	1	ENST00000263464.3:c.95G>A	p.Arg32Gln	p.R32Q	ENST00000263464	NM_001165.4	32	cGa/cAa																																																																															
ATM	472	MSKCC	GRCh37	11	108106457	108106457	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	23	198	0	ENST00000278616.4:c.392C>A	p.Ser131Ter	p.S131*	ENST00000278616	NM_000051.3	131	tCa/tAa																																																																															
ATM	472	MSKCC	GRCh37	11	108106513	108106513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	96	244	0	ENST00000278616.4:c.448C>A	p.Leu150Ile	p.L150I	ENST00000278616	NM_000051.3	150	Ctt/Att																																																																															
ATM	472	MSKCC	GRCh37	11	108115594	108115594	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	129	365	0	ENST00000278616.4:c.742C>T	p.Arg248Ter	p.R248*	ENST00000278616	NM_000051.3	248	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	168	372	0	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108139268	108139268	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55723361		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	71	690	0	ENST00000278616.4:c.2770C>T	p.Arg924Trp	p.R924W	ENST00000278616	NM_000051.3	924	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108214049	108214049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	104	280	0	ENST00000278616.4:c.8369G>A	p.Arg2790Lys	p.R2790K	ENST00000278616	NM_000051.3	2790	aGa/aAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343913	118343913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	36	383	0	ENST00000534358.1:c.2039C>T	p.Ser680Leu	p.S680L	ENST00000534358	NM_005933.3	680	tCg/tTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344036	118344036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	45	387	0	ENST00000534358.1:c.2162G>A	p.Arg721Gln	p.R721Q	ENST00000534358	NM_005933.3	721	cGa/cAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373202	118373202	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	58	460	0	ENST00000534358.1:c.6595A>G	p.Ser2199Gly	p.S2199G	ENST00000534358	NM_005933.3	2199	Agt/Ggt																																																																															
CBL	867	MSKCC	GRCh37	11	119142447	119142447	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs199739868		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	95	331	0	ENST00000264033.4:c.446G>A	p.Arg149Gln	p.R149Q	ENST00000264033	NM_005188.3	149	cGa/cAa																																																																															
CBL	867	MSKCC	GRCh37	11	119158653	119158653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	49	436	0	ENST00000264033.4:c.2033C>T	p.Ala678Val	p.A678V	ENST00000264033	NM_005188.3	678	gCc/gTc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	419064	419064	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	116	406	0	ENST00000399788.2:c.3283G>T	p.Glu1095Ter	p.E1095*	ENST00000399788	NM_001042603.1	1095	Gaa/Taa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	422253	422253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	71	590	0	ENST00000399788.2:c.3005G>A	p.Arg1002Gln	p.R1002Q	ENST00000399788	NM_001042603.1	1002	cGa/cAa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	475141	475141	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	49	533	0	ENST00000399788.2:c.496C>A	p.Leu166Ile	p.L166I	ENST00000399788	NM_001042603.1	166	Ctc/Atc																																																																															
ETV6	2120	MSKCC	GRCh37	12	11992143	11992143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	62	436	0	ENST00000396373.4:c.233C>T	p.Ser78Phe	p.S78F	ENST00000396373	NM_001987.4	78	tCt/tTt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18443830	18443830	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	40	328	0	ENST00000266497.5:c.803C>A	p.Ser268Tyr	p.S268Y	ENST00000266497		268	tCt/tAt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18691128	18691128	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	100	379	0	ENST00000266497.5:c.3239A>C	p.Tyr1080Ser	p.Y1080S	ENST00000266497		1080	tAc/tCc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793379	18793379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	38	391	0	ENST00000266497.5:c.4076C>T	p.Ser1359Phe	p.S1359F	ENST00000266497		1359	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	134	467	0	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	68	413	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944829	31944829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1270	125	1084	1	ENST00000340398.3:c.272C>T	p.Ala91Val	p.A91V	ENST00000340398	NM_001013699.2	91	gCg/gTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244476	46244476	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	66	427	0	ENST00000334344.6:c.2570C>A	p.Ser857Tyr	p.S857Y	ENST00000334344	NM_152641.2	857	tCt/tAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426313	49426313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1265	131	1189	1	ENST00000301067.7:c.12175G>A	p.Ala4059Thr	p.A4059T	ENST00000301067	NM_003482.3	4059	Gcc/Acc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427701	49427701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	127	801	0	ENST00000301067.7:c.10787G>A	p.Arg3596Gln	p.R3596Q	ENST00000301067	NM_003482.3	3596	cGg/cAg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861838	57861838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	176	694	0	ENST00000228682.2:c.1139G>A	p.Arg380Gln	p.R380Q	ENST00000228682	NM_005269.2	380	cGa/cAa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57862003	57862003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	61	485	0	ENST00000228682.2:c.1304C>T	p.Ala435Val	p.A435V	ENST00000228682	NM_005269.2	435	gCc/gTc																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145099	58145099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3211612		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	179	686	0	ENST00000257904.6:c.245G>A	p.Arg82Gln	p.R82Q	ENST00000257904	NM_000075.3	82	cGa/cAa																																																																															
MDM2	4193	MSKCC	GRCh37	12	69229721	69229721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	32	309	0	ENST00000462284.1:c.797G>A	p.Ser266Asn	p.S266N	ENST00000462284	NM_002392.5	266	aGc/aAc																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233187	69233187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	23	246	0	ENST00000462284.1:c.1052C>T	p.Ala351Val	p.A351V	ENST00000462284	NM_002392.5	351	gCc/gTc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856617	111856617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	74	230	1	ENST00000341259.2:c.668C>T	p.Ala223Val	p.A223V	ENST00000341259	NM_005475.2	223	gCg/gTg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112893859	112893859	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	33	388	0	ENST00000351677.2:c.748G>T	p.Glu250Ter	p.E250*	ENST00000351677	NM_002834.3	250	Gaa/Taa																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926960	112926960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	55	572	4	ENST00000351677.2:c.1580G>A	p.Arg527His	p.R527H	ENST00000351677	NM_002834.3	527	cGc/cAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114226	115114226	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	186	783	0	ENST00000257566.3:c.991A>G	p.Lys331Glu	p.K331E	ENST00000257566	NM_016569.3	331	Aag/Gag																																																																															
POLE	5426	MSKCC	GRCh37	12	133250214	133250214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	358	793	0	ENST00000320574.5:c.1306C>T	p.Pro436Ser	p.P436S	ENST00000320574	NM_006231.2	436	Ccc/Tcc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21619895	21619895	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	91	586	0	ENST00000382592.4:c.271T>C	p.Ser91Pro	p.S91P	ENST00000382592	NM_014572.2	91	Tcg/Ccg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28885761	28885761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	57	387	0	ENST00000282397.4:c.3601C>T	p.Pro1201Ser	p.P1201S	ENST00000282397	NM_002019.4	1201	Ccg/Tcg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28959145	28959145	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	58	337	0	ENST00000282397.4:c.1993C>T	p.Arg665Ter	p.R665*	ENST00000282397	NM_002019.4	665	Cga/Tga																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001399	29001399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	113	365	0	ENST00000282397.4:c.1333C>A	p.Pro445Thr	p.P445T	ENST00000282397	NM_002019.4	445	Cca/Aca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32899248	32899248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	63	271	0	ENST00000380152.3:c.352C>T	p.Arg118Cys	p.R118C	ENST00000380152		118	Cgc/Tgc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937655	32937655	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	47	423	0	ENST00000380152.3:c.8316A>C	p.Glu2772Asp	p.E2772D	ENST00000380152		2772	gaA/gaC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972663	32972663	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	88	406	0	ENST00000380152.3:c.10013C>A	p.Ser3338Ter	p.S3338*	ENST00000380152		3338	tCa/tAa																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134988	41134988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	55	232	0	ENST00000379561.5:c.640C>T	p.Arg214Cys	p.R214C	ENST00000379561	NM_002015.3	214	Cgt/Tgt																																																																															
RB1	5925	MSKCC	GRCh37	13	48942686	48942686	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767011440		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	32	210	0	ENST00000267163.4:c.1073G>A	p.Arg358Gln	p.R358Q	ENST00000267163	NM_000321.2	358	cGa/cAa																																																																															
RB1	5925	MSKCC	GRCh37	13	49033965	49033965	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	45	400	0	ENST00000267163.4:c.2102A>G	p.Asp701Gly	p.D701G	ENST00000267163	NM_000321.2	701	gAc/gGc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73345122	73345122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	32	318	0	ENST00000377767.4:c.1675G>A	p.Ala559Thr	p.A559T	ENST00000377767	NM_014953.3	559	Gca/Aca																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046488	30046488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	154	610	0	ENST00000331968.5:c.2695G>A	p.Glu899Lys	p.E899K	ENST00000331968	NM_002742.2	899	Gaa/Aaa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30133041	30133041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	38	457	0	ENST00000331968.5:c.560G>T	p.Arg187Ile	p.R187I	ENST00000331968	NM_002742.2	187	aGa/aTa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30194858	30194858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	58	486	0	ENST00000331968.5:c.287G>A	p.Gly96Glu	p.G96E	ENST00000331968	NM_002742.2	96	gGa/gAa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061103	38061103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	35	227	0	ENST00000250448.2:c.886G>A	p.Asp296Asn	p.D296N	ENST00000250448	NM_004496.3	296	Gac/Aac																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68353772	68353772	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	89	283	0	ENST00000487270.1:c.607G>T	p.Gly203Ter	p.G203*	ENST00000487270	NM_133509.3	203	Gga/Tga																																																																															
RAD51B	5890	MSKCC	GRCh37	14	69061312	69061312	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	14	163	0	ENST00000487270.1:c.1147A>T	p.Ile383Phe	p.I383F	ENST00000487270	NM_133509.3	383	Att/Ttt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562470	95562470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	64	433	0	ENST00000343455.3:c.4787G>T	p.Arg1596Met	p.R1596M	ENST00000343455	NM_177438.2	1596	aGg/aTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570090	95570090	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	98	428	0	ENST00000343455.3:c.3643A>G	p.Thr1215Ala	p.T1215A	ENST00000343455	NM_177438.2	1215	Acc/Gcc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95572534	95572534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	49	242	0	ENST00000343455.3:c.2831G>A	p.Arg944Gln	p.R944Q	ENST00000343455	NM_177438.2	944	cGa/cAa																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38614469	38614469	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	71	333	0	ENST00000299084.4:c.235G>T	p.Asp79Tyr	p.D79Y	ENST00000299084	NM_152594.2	79	Gac/Tac																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643300	38643300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	111	379	0	ENST00000299084.4:c.770G>A	p.Arg257His	p.R257H	ENST00000299084	NM_152594.2	257	cGc/cAc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643315	38643315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	56	383	0	ENST00000299084.4:c.785G>T	p.Arg262Ile	p.R262I	ENST00000299084	NM_152594.2	262	aGa/aTa																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40683721	40683721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	175	737	0	ENST00000249776.8:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000249776	NM_033286.3	238	cGa/cAa																																																																															
MGA	23269	MSKCC	GRCh37	15	41961791	41961791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	49	412	0	ENST00000219905.7:c.699C>A	p.Phe233Leu	p.F233L	ENST00000219905	NM_001164273.1	233	ttC/ttA																																																																															
MGA	23269	MSKCC	GRCh37	15	42035031	42035031	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	78	644	0	ENST00000219905.7:c.4873G>T	p.Glu1625Ter	p.E1625*	ENST00000219905	NM_001164273.1	1625	Gaa/Taa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43713250	43713250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	139	959	1	ENST00000382044.4:c.4223G>A	p.Arg1408His	p.R1408H	ENST00000382044	NM_001141980.1	1408	cGc/cAc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43730552	43730552	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200776719		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	148	534	0	ENST00000382044.4:c.3161G>A	p.Arg1054Gln	p.R1054Q	ENST00000382044	NM_001141980.1	1054	cGa/cAa																																																																															
CD276	80381	MSKCC	GRCh37	15	74000779	74000779	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	83	630	0	ENST00000318443.5:c.1469G>T	p.Arg490Ile	p.R490I	ENST00000318443	NM_001024736.1	490	aGa/aTa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88428950	88428950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	35	205	0	ENST00000360948.2:c.2150G>A	p.Gly717Glu	p.G717E	ENST00000360948	NM_001012338.2	717	gGa/gAa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88670407	88670407	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	44	364	0	ENST00000360948.2:c.1279G>T	p.Glu427Ter	p.E427*	ENST00000360948	NM_001012338.2	427	Gaa/Taa																																																																															
BLM	641	MSKCC	GRCh37	15	91304045	91304045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	80	535	0	ENST00000355112.3:c.1442C>T	p.Ala481Val	p.A481V	ENST00000355112	NM_000057.2	481	gCc/gTc																																																																															
BLM	641	MSKCC	GRCh37	15	91306337	91306337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	55	349	0	ENST00000355112.3:c.2024C>T	p.Ala675Val	p.A675V	ENST00000355112	NM_000057.2	675	gCg/gTg																																																																															
BLM	641	MSKCC	GRCh37	15	91312758	91312758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	76	496	0	ENST00000355112.3:c.2497G>A	p.Ala833Thr	p.A833T	ENST00000355112	NM_000057.2	833	Gct/Act																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99456496	99456496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	59	378	0	ENST00000268035.6:c.1813C>T	p.Arg605Cys	p.R605C	ENST00000268035	NM_000875.3	605	Cgc/Tgc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465547	99465547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	77	599	0	ENST00000268035.6:c.2372C>T	p.Ser791Phe	p.S791F	ENST00000268035	NM_000875.3	791	tCt/tTt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2133780	2133780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	74	954	1	ENST00000219476.3:c.3968C>T	p.Ala1323Val	p.A1323V	ENST00000219476	NM_000548.3	1323	gCg/gTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658653	3658653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	278	1050	0	ENST00000294008.3:c.313G>A	p.Gly105Ser	p.G105S	ENST00000294008	NM_032444.2	105	Ggc/Agc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777838	3777838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1347	192	1222	0	ENST00000262367.5:c.7210G>A	p.Glu2404Lys	p.E2404K	ENST00000262367	NM_004380.2	2404	Gaa/Aaa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820978	3820978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	135	546	1	ENST00000262367.5:c.2473C>T	p.Pro825Ser	p.P825S	ENST00000262367	NM_004380.2	825	Cct/Tct																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3830776	3830776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	164	553	0	ENST00000262367.5:c.1780G>A	p.Glu594Lys	p.E594K	ENST00000262367	NM_004380.2	594	Gaa/Aaa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857127	9857127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	90	378	0	ENST00000330684.3:c.4274C>T	p.Ser1425Leu	p.S1425L	ENST00000330684	NM_001134407.1	1425	tCg/tTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857587	9857587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	49	518	1	ENST00000330684.3:c.3814G>A	p.Ala1272Thr	p.A1272T	ENST00000330684	NM_001134407.1	1272	Gca/Aca																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858746	9858746	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	68	310	0	ENST00000330684.3:c.2655C>A	p.Phe885Leu	p.F885L	ENST00000330684	NM_001134407.1	885	ttC/ttA																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923392	9923392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	110	625	0	ENST00000330684.3:c.1895C>T	p.Ser632Phe	p.S632F	ENST00000330684	NM_001134407.1	632	tCt/tTt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23625412	23625412	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	59	425	0	ENST00000261584.4:c.3114G>T	p.Trp1038Cys	p.W1038C	ENST00000261584	NM_024675.3	1038	tgG/tgT																																																																															
CBFB	865	MSKCC	GRCh37	16	67063643	67063643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	107	577	0	ENST00000412916.2:c.92G>A	p.Gly31Asp	p.G31D	ENST00000412916		31	gGc/gAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68842692	68842692	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	268	616	0	ENST00000261769.5:c.628G>T	p.Glu210Ter	p.E210*	ENST00000261769	NM_004360.3	210	Gaa/Taa																																																																															
CDH1	999	MSKCC	GRCh37	16	68867356	68867356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	82	523	0	ENST00000261769.5:c.2603G>A	p.Arg868His	p.R868H	ENST00000261769	NM_004360.3	868	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821365	72821365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	81	395	1	ENST00000268489.5:c.10810G>A	p.Ala3604Thr	p.A3604T	ENST00000268489	NM_006885.3	3604	Gcc/Acc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828024	72828024	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200701402		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	128	1006	2	ENST00000268489.5:c.8557G>A	p.Ala2853Thr	p.A2853T	ENST00000268489	NM_006885.3	2853	Gca/Aca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831047	72831047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	64	493	0	ENST00000268489.5:c.5534G>A	p.Ser1845Asn	p.S1845N	ENST00000268489	NM_006885.3	1845	aGc/aAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845838	72845838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	87	692	1	ENST00000268489.5:c.3629G>A	p.Arg1210Gln	p.R1210Q	ENST00000268489	NM_006885.3	1210	cGa/cAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993007	72993008	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	120	1027	0	ENST00000268489.5:c.1037dup	p.Asn346LysfsTer11	p.N346Kfs*11	ENST00000268489	NM_006885.3	346	aac/aaAc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81990312	81990312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	53	451	0	ENST00000359376.3:c.3583G>A	p.Glu1195Lys	p.E1195K	ENST00000359376	NM_002661.3	1195	Gaa/Aaa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350710	89350710	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138898373		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	141	857	0	ENST00000301030.4:c.2240C>T	p.Ser747Leu	p.S747L	ENST00000301030	NM_001256183.1	747	tCg/tTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350972	89350972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1155	139	884	0	ENST00000301030.4:c.1978G>A	p.Glu660Lys	p.E660K	ENST00000301030	NM_001256183.1	660	Gaa/Aaa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89354953	89354953	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	208	848	2	ENST00000301030.4:c.727A>G	p.Asn243Asp	p.N243D	ENST00000301030	NM_001256183.1	243	Aac/Gac																																																																															
FANCA	2175	MSKCC	GRCh37	16	89851353	89851353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	147	679	0	ENST00000389301.3:c.1379G>A	p.Arg460Gln	p.R460Q	ENST00000389301	NM_000135.2	460	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	115	801	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7978973	7978973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	88	596	1	ENST00000319144.4:c.1594G>A	p.Glu532Lys	p.E532K	ENST00000319144	NM_001139.2	532	Gaa/Aaa																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7989466	7989466	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	268	903	0	ENST00000319144.4:c.220T>C	p.Tyr74His	p.Y74H	ENST00000319144	NM_001139.2	74	Tac/Cac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15989690	15989690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	70	446	0	ENST00000268712.3:c.3083G>A	p.Arg1028Gln	p.R1028Q	ENST00000268712	NM_006311.3	1028	cGa/cAa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16022764	16022764	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	90	351	0	ENST00000268712.3:c.1888G>T	p.Glu630Ter	p.E630*	ENST00000268712	NM_006311.3	630	Gaa/Taa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16089907	16089907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	66	332	0	ENST00000268712.3:c.203G>A	p.Arg68Gln	p.R68Q	ENST00000268712	NM_006311.3	68	cGa/cAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29490382	29490382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	53	445	1	ENST00000358273.4:c.467G>A	p.Arg156His	p.R156H	ENST00000358273	NM_001042492.2	156	cGc/cAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29533379	29533379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	26	182	0	ENST00000358273.4:c.1382G>A	p.Arg461Gln	p.R461Q	ENST00000358273	NM_001042492.2	461	cGa/cAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29664390	29664390	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	39	385	0	ENST00000358273.4:c.6432G>T	p.Glu2144Asp	p.E2144D	ENST00000358273	NM_001042492.2	2144	gaG/gaT																																																																															
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	25	323	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29679390	29679390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	73	371	0	ENST00000358273.4:c.7573G>A	p.Asp2525Asn	p.D2525N	ENST00000358273	NM_001042492.2	2525	Gac/Aac																																																																															
NF1	4763	MSKCC	GRCh37	17	29683534	29683534	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	25	284	0	ENST00000358273.4:c.7672G>T	p.Glu2558Ter	p.E2558*	ENST00000358273	NM_001042492.2	2558	Gaa/Taa																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264538	30264538	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	73	231	0	ENST00000322652.5:c.273G>T	p.Glu91Asp	p.E91D	ENST00000322652	NM_015355.2	91	gaG/gaT																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627382	37627382	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	148	648	1	ENST00000447079.4:c.1297A>G	p.Ser433Gly	p.S433G	ENST00000447079	NM_015083.1	433	Agt/Ggt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37667783	37667783	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	86	381	0	ENST00000447079.4:c.2668C>T	p.Arg890Cys	p.R890C	ENST00000447079	NM_015083.1	890	Cgc/Tgc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682537	37682537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	46	364	0	ENST00000447079.4:c.3728G>T	p.Arg1243Ile	p.R1243I	ENST00000447079	NM_015083.1	1243	aGa/aTa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881359	37881359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	194	901	0	ENST00000269571.5:c.2551G>A	p.Val851Met	p.V851M	ENST00000269571		851	Gtg/Atg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40474456	40474456	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	62	512	0	ENST00000264657.5:c.1945T>C	p.Ser649Pro	p.S649P	ENST00000264657	NM_139276.2	649	Tca/Cca																																																																															
EZH1	2145	MSKCC	GRCh37	17	40854561	40854561	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138757221		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	110	863	4	ENST00000428826.2:c.2233G>A	p.Asp745Asn	p.D745N	ENST00000428826		745	Gac/Aac																																																																															
EZH1	2145	MSKCC	GRCh37	17	40874827	40874827	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	62	497	0	ENST00000428826.2:c.473T>C	p.Val158Ala	p.V158A	ENST00000428826		158	gTc/gCc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245143	41245143	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	209	752	0	ENST00000357654.3:c.2405T>C	p.Val802Ala	p.V802A	ENST00000357654	NM_007294.3	802	gTg/gCg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245759	41245759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	77	553	0	ENST00000357654.3:c.1789G>A	p.Glu597Lys	p.E597K	ENST00000357654	NM_007294.3	597	Gaa/Aaa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246152	41246152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	144	578	0	ENST00000357654.3:c.1396C>T	p.Arg466Trp	p.R466W	ENST00000357654	NM_007294.3	466	Cgg/Tgg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246282	41246282	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	60	523	0	ENST00000357654.3:c.1266T>G	p.Tyr422Ter	p.Y422*	ENST00000357654	NM_007294.3	422	taT/taG																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805457	46805457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	144	1012	0	ENST00000290295.7:c.499G>A	p.Asp167Asn	p.D167N	ENST00000290295	NM_006361.5	167	Gac/Aac																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58701067	58701067	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	73	564	0	ENST00000305921.3:c.658G>T	p.Glu220Ter	p.E220*	ENST00000305921	NM_003620.3	220	Gaa/Taa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740668	58740668	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	205	530	0	ENST00000305921.3:c.1573G>T	p.Glu525Ter	p.E525*	ENST00000305921	NM_003620.3	525	Gaa/Taa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740750	58740750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	148	571	0	ENST00000305921.3:c.1655G>A	p.Arg552Gln	p.R552Q	ENST00000305921	NM_003620.3	552	cGa/cAa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59770824	59770824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45572934		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	34	344	0	ENST00000259008.2:c.2542C>T	p.Arg848Cys	p.R848C	ENST00000259008	NM_032043.2	848	Cgc/Tgc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59926512	59926512	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61757643		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	98	523	1	ENST00000259008.2:c.485G>A	p.Arg162Gln	p.R162Q	ENST00000259008	NM_032043.2	162	cGa/cAa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59926602	59926602	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	97	384	0	ENST00000259008.2:c.395C>A	p.Thr132Asn	p.T132N	ENST00000259008	NM_032043.2	132	aCc/aAc																																																																															
CD79B	974	MSKCC	GRCh37	17	62007580	62007580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	127	968	0	ENST00000392795.3:c.287G>A	p.Arg96His	p.R96H	ENST00000392795	NM_001039933.1	96	cGc/cAc																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66511562	66511562	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1224297486		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	49	326	0	ENST00000358598.2:c.22G>A	p.Ala8Thr	p.A8T	ENST00000358598	NM_212471.2	8	Gcc/Acc																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66522028	66522028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	38	255	0	ENST00000358598.2:c.683G>A	p.Arg228Gln	p.R228Q	ENST00000358598	NM_212471.2	228	cGa/cAa																																																																															
YES1	7525	MSKCC	GRCh37	18	751726	751726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	36	359	0	ENST00000314574.4:c.350G>T	p.Arg117Ile	p.R117I	ENST00000314574	NM_005433.3	117	aGa/aTa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375001	45375001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	96	417	0	ENST00000262160.6:c.842A>G	p.Glu281Gly	p.E281G	ENST00000262160	NM_005901.5	281	gAa/gGa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56378177	56378177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	31	365	0	ENST00000348428.3:c.950G>A	p.Cys317Tyr	p.C317Y	ENST00000348428	NM_006785.3	317	tGc/tAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5208313	5208313	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	238	920	0	ENST00000357368.4:c.5577C>A	p.Phe1859Leu	p.F1859L	ENST00000357368	NM_002850.3	1859	ttC/ttA																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210755	5210755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	275	1000	0	ENST00000357368.4:c.5296C>T	p.Arg1766Cys	p.R1766C	ENST00000357368	NM_002850.3	1766	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220323	5220323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	176	763	0	ENST00000357368.4:c.3497G>A	p.Gly1166Glu	p.G1166E	ENST00000357368	NM_002850.3	1166	gGa/gAa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244176	5244176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	100	900	0	ENST00000357368.4:c.1306C>T	p.Arg436Trp	p.R436W	ENST00000357368	NM_002850.3	436	Cgg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244274	5244274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	114	1078	1	ENST00000357368.4:c.1208C>T	p.Ser403Leu	p.S403L	ENST00000357368	NM_002850.3	403	tCg/tTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244392	5244392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	130	956	2	ENST00000357368.4:c.1090G>A	p.Val364Ile	p.V364I	ENST00000357368	NM_002850.3	364	Gtc/Atc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5265204	5265204	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	111	899	1	ENST00000357368.4:c.383A>G	p.Asp128Gly	p.D128G	ENST00000357368	NM_002850.3	128	gAc/gGc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10251851	10251851	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	164	633	0	ENST00000340748.4:c.3276G>T	p.Lys1092Asn	p.K1092N	ENST00000340748		1092	aaG/aaT																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10267124	10267124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	39	553	1	ENST00000340748.4:c.1294G>A	p.Glu432Lys	p.E432K	ENST00000340748		432	Gaa/Aaa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271691	15271691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1171	309	1222	1	ENST00000263388.2:c.6748G>A	p.Glu2250Lys	p.E2250K	ENST00000263388	NM_000435.2	2250	Gaa/Aaa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276621	15276621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	246	834	2	ENST00000263388.2:c.5644G>A	p.Ala1882Thr	p.A1882T	ENST00000263388	NM_000435.2	1882	Gcc/Acc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15278086	15278086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	114	829	0	ENST00000263388.2:c.5336G>A	p.Gly1779Asp	p.G1779D	ENST00000263388	NM_000435.2	1779	gGc/gAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15280911	15280911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	114	938	0	ENST00000263388.2:c.5185G>A	p.Ala1729Thr	p.A1729T	ENST00000263388	NM_000435.2	1729	Gcc/Acc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17946822	17946822	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	116	914	0	ENST00000458235.1:c.1825G>T	p.Asp609Tyr	p.D609Y	ENST00000458235	NM_000215.3	609	Gac/Tac																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953881	17953881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	280	978	0	ENST00000458235.1:c.521C>T	p.Ala174Val	p.A174V	ENST00000458235	NM_000215.3	174	gCg/gTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953956	17953956	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774941503		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	303	955	0	ENST00000458235.1:c.446G>A	p.Arg149His	p.R149H	ENST00000458235	NM_000215.3	149	cGc/cAc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266888	18266888	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	120	610	0	ENST00000222254.8:c.199C>T	p.Arg67Ter	p.R67*	ENST00000222254	NM_005027.3	67	Cga/Tga																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256823	19256823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	84	553	0	ENST00000162023.5:c.890G>A	p.Arg297Gln	p.R297Q	ENST00000162023		297	cGa/cAa																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260105	19260105	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	228	931	0	ENST00000162023.5:c.188A>G	p.Asp63Gly	p.D63G	ENST00000162023		63	gAc/gGc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218825	36218825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	268	1040	1	ENST00000222270.7:c.4436C>T	p.Ser1479Leu	p.S1479L	ENST00000222270	NM_014727.1	1479	tCg/tTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227822	36227822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1169	145	1025	1	ENST00000222270.7:c.7307G>A	p.Arg2436Lys	p.R2436K	ENST00000222270	NM_014727.1	2436	aGa/aAa																																																																															
AXL	558	MSKCC	GRCh37	19	41743874	41743874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	117	906	4	ENST00000301178.4:c.809G>A	p.Gly270Asp	p.G270D	ENST00000301178	NM_021913.4	270	gGc/gAc																																																																															
AXL	558	MSKCC	GRCh37	19	41758825	41758825	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	113	845	3	ENST00000301178.4:c.1879G>T	p.Asp627Tyr	p.D627Y	ENST00000301178	NM_021913.4	627	Gac/Tac																																																																															
CIC	23152	MSKCC	GRCh37	19	42794596	42794596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	63	1056	0	ENST00000575354.2:c.1676C>T	p.Ala559Val	p.A559V	ENST00000575354	NM_015125.3	559	gCc/gTc																																																																															
CIC	23152	MSKCC	GRCh37	19	42794719	42794719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	155	992	0	ENST00000575354.2:c.1799G>A	p.Arg600His	p.R600H	ENST00000575354	NM_015125.3	600	cGc/cAc																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731692	47731692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	68	377	3	ENST00000449228.1:c.100C>T	p.Arg34Cys	p.R34C	ENST00000449228	NM_001127240.2	34	Cgc/Tgc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714594	52714594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	92	885	0	ENST00000322088.6:c.352G>A	p.Glu118Lys	p.E118K	ENST00000322088	NM_014225.5	118	Gag/Aag																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52729220	52729220	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	75	668	1	ENST00000322088.6:c.1756C>A	p.Leu586Met	p.L586M	ENST00000322088	NM_014225.5	586	Ctg/Atg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982502	25982502	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	45	228	0	ENST00000435504.4:c.788G>T	p.Arg263Ile	p.R263I	ENST00000435504		263	aGa/aTa																																																																															
ALK	238	MSKCC	GRCh37	2	29416302	29416302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	104	796	1	ENST00000389048.3:c.4651C>A	p.Pro1551Thr	p.P1551T	ENST00000389048	NM_004304.4	1551	Ccg/Acg																																																																															
ALK	238	MSKCC	GRCh37	2	29443676	29443676	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56315533		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	147	705	3	ENST00000389048.3:c.3541C>T	p.Arg1181Cys	p.R1181C	ENST00000389048	NM_004304.4	1181	Cgc/Tgc																																																																															
ALK	238	MSKCC	GRCh37	2	29754847	29754847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	66	565	1	ENST00000389048.3:c.1088C>T	p.Ala363Val	p.A363V	ENST00000389048	NM_004304.4	363	gCc/gTc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47639587	47639587	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	92	322	0	ENST00000233146.2:c.680G>T	p.Arg227Ile	p.R227I	ENST00000233146	NM_000251.2	227	aGa/aTa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47705610	47705610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	53	318	1	ENST00000233146.2:c.2410G>A	p.Ala804Thr	p.A804T	ENST00000233146	NM_000251.2	804	Gca/Aca																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027712	48027712	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	39	274	0	ENST00000234420.5:c.2590G>T	p.Gly864Ter	p.G864*	ENST00000234420	NM_000179.2	864	Gga/Tga																																																																															
MSH6	2956	MSKCC	GRCh37	2	48028161	48028161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	27	333	0	ENST00000234420.5:c.3039G>T	p.Lys1013Asn	p.K1013N	ENST00000234420	NM_000179.2	1013	aaG/aaT																																																																															
REL	5966	MSKCC	GRCh37	2	61118821	61118821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146326268		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	25	169	1	ENST00000295025.8:c.14C>T	p.Ala5Val	p.A5V	ENST00000295025	NM_002908.2	5	gCg/gTg																																																																															
REL	5966	MSKCC	GRCh37	2	61145357	61145357	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	26	278	0	ENST00000295025.8:c.567T>A	p.Cys189Ter	p.C189*	ENST00000295025	NM_002908.2	189	tgT/tgA																																																																															
REL	5966	MSKCC	GRCh37	2	61149129	61149129	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144119768		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	57	370	0	ENST00000295025.8:c.1319C>T	p.Ser440Leu	p.S440L	ENST00000295025	NM_002908.2	440	tCg/tTg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61715351	61715351	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	92	647	0	ENST00000401558.2:c.2262A>C	p.Glu754Asp	p.E754D	ENST00000401558	NM_003400.3	754	gaA/gaC																																																																															
XPO1	7514	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	80	571	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719307	61719307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	32	345	1	ENST00000401558.2:c.1750G>A	p.Ala584Thr	p.A584T	ENST00000401558	NM_003400.3	584	Gct/Act																																																																															
XPO1	7514	MSKCC	GRCh37	2	61720085	61720085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	119	324	0	ENST00000401558.2:c.1349C>A	p.Ser450Tyr	p.S450Y	ENST00000401558	NM_003400.3	450	tCc/tAc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61724120	61724120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	49	277	0	ENST00000401558.2:c.782G>A	p.Arg261Gln	p.R261Q	ENST00000401558	NM_003400.3	261	cGa/cAa																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96920736	96920736	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	67	346	0	ENST00000258439.3:c.245-1G>A		p.X82_splice	ENST00000258439	NM_001193304.2	82																																																																																
INPP4A	3631	MSKCC	GRCh37	2	99160452	99160452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	60	504	0	ENST00000074304.5:c.931G>A	p.Asp311Asn	p.D311N	ENST00000074304	NM_001134224.1	311	Gac/Aac																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182493	99182493	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	97	710	1	ENST00000074304.5:c.2296G>A	p.Asp766Asn	p.D766N	ENST00000074304	NM_001134224.1	766	Gac/Aac																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99189367	99189367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	79	685	0	ENST00000074304.5:c.2623G>A	p.Asp875Asn	p.D875N	ENST00000074304	NM_001134224.1	875	Gac/Aac																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128038082	128038082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	137	451	0	ENST00000285398.2:c.1468G>A	p.Glu490Lys	p.E490K	ENST00000285398	NM_000122.1	490	Gaa/Aaa																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872738	136872738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	55	430	0	ENST00000241393.3:c.760C>T	p.Pro254Ser	p.P254S	ENST00000241393	NM_003467.2	254	Cct/Tct																																																																															
PMS1	5378	MSKCC	GRCh37	2	190738327	190738327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	63	249	0	ENST00000441310.2:c.2579G>A	p.Arg860Lys	p.R860K	ENST00000441310	NM_000534.4	860	aGa/aAa																																																																															
CASP8	841	MSKCC	GRCh37	2	202149662	202149662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	105	508	0	ENST00000358485.4:c.1103G>A	p.Cys368Tyr	p.C368Y	ENST00000358485	NM_001080125.1	368	tGc/tAc																																																																															
CASP8	841	MSKCC	GRCh37	2	202150013	202150013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	84	659	0	ENST00000358485.4:c.1454G>A	p.Cys485Tyr	p.C485Y	ENST00000358485	NM_001080125.1	485	tGc/tAc																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204737441	204737441	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	58	283	0	ENST00000302823.3:c.578G>T	p.Arg193Ile	p.R193I	ENST00000302823	NM_005214.4	193	aGa/aTa																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	70	293	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212578365	212578365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	83	259	0	ENST00000342788.4:c.892G>A	p.Val298Met	p.V298M	ENST00000342788	NM_005235.2	298	Gtg/Atg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989562	212989562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	53	366	0	ENST00000342788.4:c.149G>A	p.Arg50His	p.R50H	ENST00000342788	NM_005235.2	50	cGc/cAc																																																																															
BARD1	580	MSKCC	GRCh37	2	215645983	215645984	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	52	435	0	ENST00000260947.4:c.614dup	p.Gln206AlafsTer8	p.Q206Afs*8	ENST00000260947	NM_000465.2	205	aag/aaAg																																																																															
BARD1	580	MSKCC	GRCh37	2	215646149	215646149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	100	434	0	ENST00000260947.4:c.449G>A	p.Arg150Gln	p.R150Q	ENST00000260947	NM_000465.2	150	cGa/cAa																																																																															
BARD1	580	MSKCC	GRCh37	2	215646178	215646178	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	60	342	0	ENST00000260947.4:c.420G>T	p.Lys140Asn	p.K140N	ENST00000260947	NM_000465.2	140	aaG/aaT																																																																															
BARD1	580	MSKCC	GRCh37	2	215657050	215657050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	60	340	0	ENST00000260947.4:c.335G>A	p.Arg112Gln	p.R112Q	ENST00000260947	NM_000465.2	112	cGa/cAa																																																																															
CUL3	8452	MSKCC	GRCh37	2	225338988	225338988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	35	365	0	ENST00000264414.4:c.2281C>T	p.Arg761Cys	p.R761C	ENST00000264414	NM_003590.4	761	Cgc/Tgc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225346699	225346699	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	125	413	0	ENST00000264414.4:c.1939G>T	p.Glu647Ter	p.E647*	ENST00000264414	NM_003590.4	647	Gaa/Taa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661884	227661884	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	129	1092	1	ENST00000305123.5:c.1571G>T	p.Arg524Ile	p.R524I	ENST00000305123	NM_005544.2	524	aGa/aTa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546673	9546673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	37	440	0	ENST00000353224.5:c.1349C>T	p.Ala450Val	p.A450V	ENST00000353224	NM_177990.2	450	gCc/gTc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561195	9561195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	45	424	0	ENST00000353224.5:c.587C>T	p.Ser196Phe	p.S196F	ENST00000353224	NM_177990.2	196	tCt/tTt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023958	31023958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	75	699	0	ENST00000375687.4:c.3443G>A	p.Arg1148His	p.R1148H	ENST00000375687	NM_015338.5	1148	cGc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733276	40733276	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	75	579	0	ENST00000373198.4:c.3530C>A	p.Ser1177Tyr	p.S1177Y	ENST00000373198	NM_133170.3	1177	tCt/tAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739040	40739040	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	72	670	0	ENST00000373198.4:c.3244C>A	p.Leu1082Met	p.L1082M	ENST00000373198	NM_133170.3	1082	Ctg/Atg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748583	40748583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	52	458	0	ENST00000373198.4:c.2933C>T	p.Ala978Val	p.A978V	ENST00000373198	NM_133170.3	978	gCg/gTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980918	40980918	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	28	422	0	ENST00000373198.4:c.1568A>G	p.Tyr523Cys	p.Y523C	ENST00000373198	NM_133170.3	523	tAc/tGc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46256758	46256758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	94	347	1	ENST00000371998.3:c.814G>A	p.Asp272Asn	p.D272N	ENST00000371998		272	Gat/Aat																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265474	46265474	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	19	178	0	ENST00000371998.3:c.2344G>T	p.Asp782Tyr	p.D782Y	ENST00000371998		782	Gac/Tac																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62319945	62319945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	123	895	0	ENST00000508582.2:c.1859G>A	p.Gly620Asp	p.G620D	ENST00000508582		620	gGc/gAc																																																																															
ERG	2078	MSKCC	GRCh37	21	39755516	39755516	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	105	497	0	ENST00000288319.7:c.1249T>C	p.Tyr417His	p.Y417H	ENST00000288319	NM_182918.3	417	Tac/Cac																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45651216	45651216	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200793282		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	108	731	1	ENST00000407780.3:c.809C>T	p.Ala270Val	p.A270V	ENST00000407780	NM_001283052.1	270	gCg/gTg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655166	45655166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	157	547	0	ENST00000407780.3:c.686G>A	p.Gly229Asp	p.G229D	ENST00000407780	NM_001283052.1	229	gGc/gAc																																																																															
NF2	4771	MSKCC	GRCh37	22	30070911	30070911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	94	761	0	ENST00000338641.4:c.1427C>T	p.Ala476Val	p.A476V	ENST00000338641	NM_000268.3	476	gCc/gTc																																																																															
EP300	2033	MSKCC	GRCh37	22	41536164	41536164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	164	429	0	ENST00000263253.7:c.1781C>T	p.Thr594Met	p.T594M	ENST00000263253	NM_001429.3	594	aCg/aTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41545897	41545897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	143	925	0	ENST00000263253.7:c.2512C>T	p.Arg838Cys	p.R838C	ENST00000263253	NM_001429.3	838	Cgt/Tgt																																																																															
EP300	2033	MSKCC	GRCh37	22	41558740	41558740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	83	301	0	ENST00000263253.7:c.3685G>A	p.Glu1229Lys	p.E1229K	ENST00000263253	NM_001429.3	1229	Gaa/Aaa																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458537	12458537	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140204299		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	193	662	1	ENST00000287820.6:c.1154G>A	p.Arg385Gln	p.R385Q	ENST00000287820	NM_015869.4	385	cGa/cAa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37050378	37050378	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	99	282	0	ENST00000231790.2:c.527T>G	p.Ile176Ser	p.I176S	ENST00000231790	NM_000249.3	176	aTt/aGt																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182052	38182052	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1190702008		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	72	558	1	ENST00000396334.3:c.676G>A	p.Glu226Lys	p.E226K	ENST00000396334	NM_002468.4	226	Gaa/Aaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267063	41267063	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	70	320	0	ENST00000349496.5:c.734G>A	p.Gly245Asp	p.G245D	ENST00000349496	NM_001904.3	245	gGt/gAt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41268762	41268762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	40	386	1	ENST00000349496.5:c.1000G>A	p.Glu334Lys	p.E334K	ENST00000349496	NM_001904.3	334	Gaa/Aaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275360	41275360	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	120	303	0	ENST00000349496.5:c.1524+2T>C		p.X508_splice	ENST00000349496	NM_001904.3	508																																																																																
SETD2	29072	MSKCC	GRCh37	3	47061277	47061277	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	186	428	0	ENST00000409792.3:c.7404G>T	p.Lys2468Asn	p.K2468N	ENST00000409792	NM_014159.6	2468	aaG/aaT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47144880	47144880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	50	392	0	ENST00000409792.3:c.4873C>T	p.Arg1625Cys	p.R1625C	ENST00000409792	NM_014159.6	1625	Cgt/Tgt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161973	47161973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	48	328	0	ENST00000409792.3:c.4153G>A	p.Glu1385Lys	p.E1385K	ENST00000409792	NM_014159.6	1385	Gaa/Aaa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442502	52442502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	43	447	0	ENST00000460680.1:c.243C>A	p.Phe81Leu	p.F81L	ENST00000460680	NM_004656.3	81	ttC/ttA																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643399	52643399	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146395938		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	62	430	0	ENST00000394830.3:c.2497C>T	p.Arg833Cys	p.R833C	ENST00000394830	NM_018313.4	833	Cgc/Tgc																																																																															
MITF	4286	MSKCC	GRCh37	3	70008432	70008432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	32	249	0	ENST00000352241.4:c.1022G>A	p.Arg341His	p.R341H	ENST00000352241	NM_198159.2	341	cGc/cAc																																																																															
MITF	4286	MSKCC	GRCh37	3	70014359	70014359	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	166	668	0	ENST00000352241.4:c.1523G>T	p.Arg508Met	p.R508M	ENST00000352241	NM_198159.2	508	aGg/aTg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026984	71026984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	81	491	1	ENST00000318789.4:c.1343C>T	p.Ser448Leu	p.S448L	ENST00000318789	NM_032682.5	448	tCg/tTg																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799734	72799734	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	155	622	0	ENST00000325599.8:c.1435G>T	p.Glu479Ter	p.E479*	ENST00000325599	NM_018130.2	479	Gaa/Taa																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72866502	72866502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	32	282	0	ENST00000325599.8:c.761G>A	p.Arg254Gln	p.R254Q	ENST00000325599	NM_018130.2	254	cGa/cAa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259653	89259653	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	14	245	0	ENST00000336596.2:c.797G>T	p.Arg266Ile	p.R266I	ENST00000336596	NM_005233.5	266	aGa/aTa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390138	89390138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	81	315	1	ENST00000336596.2:c.887C>T	p.Thr296Ile	p.T296I	ENST00000336596	NM_005233.5	296	aCt/aTt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390923	89390923	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	34	335	0	ENST00000336596.2:c.989G>T	p.Arg330Ile	p.R330I	ENST00000336596	NM_005233.5	330	aGa/aTa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89462381	89462381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	86	535	1	ENST00000336596.2:c.1853C>T	p.Ala618Val	p.A618V	ENST00000336596	NM_005233.5	618	gCc/gTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499366	89499366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	120	418	0	ENST00000336596.2:c.2536C>T	p.Pro846Ser	p.P846S	ENST00000336596	NM_005233.5	846	Ccc/Tcc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119631596	119631596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	86	350	0	ENST00000316626.5:c.670G>A	p.Ala224Thr	p.A224T	ENST00000316626		224	Gca/Aca																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134514513	134514513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	160	678	0	ENST00000398015.3:c.40G>A	p.Ala14Thr	p.A14T	ENST00000398015	NM_004441.4	14	Gca/Aca																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138409963	138409963	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	53	283	0	ENST00000289153.2:c.1915C>A	p.Leu639Ile	p.L639I	ENST00000289153	NM_006219.2	639	Ctt/Att																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138474703	138474703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	53	457	0	ENST00000289153.2:c.290G>A	p.Arg97Gln	p.R97Q	ENST00000289153	NM_006219.2	97	cGa/cAa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138474772	138474772	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	49	398	0	ENST00000289153.2:c.221A>G	p.Asp74Gly	p.D74G	ENST00000289153	NM_006219.2	74	gAt/gGt																																																																															
ATR	545	MSKCC	GRCh37	3	142189026	142189026	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	33	235	0	ENST00000350721.4:c.6222-1G>T		p.X2074_splice	ENST00000350721	NM_001184.3	2074																																																																																
ATR	545	MSKCC	GRCh37	3	142272744	142272744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	59	465	0	ENST00000350721.4:c.2455G>A	p.Asp819Asn	p.D819N	ENST00000350721	NM_001184.3	819	Gat/Aat																																																																															
ATR	545	MSKCC	GRCh37	3	142281507	142281507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	181	552	0	ENST00000350721.4:c.737C>T	p.Ser246Phe	p.S246F	ENST00000350721	NM_001184.3	246	tCc/tTc																																																																															
ATR	545	MSKCC	GRCh37	3	142281802	142281802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	59	440	0	ENST00000350721.4:c.442G>A	p.Glu148Lys	p.E148K	ENST00000350721	NM_001184.3	148	Gaa/Aaa																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260151	149260151	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	247	617	1	ENST00000360632.3:c.742C>T	p.Arg248Ter	p.R248*	ENST00000360632	NM_015472.4	248	Cga/Tga																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374688	149374688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	284	805	0	ENST00000360632.3:c.406G>A	p.Ala136Thr	p.A136T	ENST00000360632	NM_015472.4	136	Gcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	52	574	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	119	607	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	75	374	0	ENST00000263967.3:c.333G>T	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951989	178951989	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	61	337	0	ENST00000263967.3:c.3044C>A	p.Ser1015Tyr	p.S1015Y	ENST00000263967	NM_006218.2	1015	tCt/tAt																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182679136	182679136	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202126248		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	34	341	0	ENST00000292782.4:c.398G>A	p.Ser133Asn	p.S133N	ENST00000292782	NM_020640.2	133	aGc/aAc																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504384	186504384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	37	345	0	ENST00000323963.5:c.721G>A	p.Glu241Lys	p.E241K	ENST00000323963		241	Gaa/Aaa																																																																															
BCL6	604	MSKCC	GRCh37	3	187443345	187443345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	61	487	0	ENST00000232014.4:c.1781G>A	p.Arg594Gln	p.R594Q	ENST00000232014	NM_001130845.1	594	cGa/cAa																																																																															
BCL6	604	MSKCC	GRCh37	3	187447195	187447195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	188	757	0	ENST00000232014.4:c.998G>A	p.Ser333Asn	p.S333N	ENST00000232014	NM_001130845.1	333	aGc/aAc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806668	1806668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	143	1099	0	ENST00000260795.2:c.1384G>A	p.Asp462Asn	p.D462N	ENST00000260795		462	Gac/Aac																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1919941	1919941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	206	672	1	ENST00000382891.5:c.1001G>A	p.Ser334Asn	p.S334N	ENST00000382891	NM_133335.3	334	aGc/aAc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1977026	1977026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	50	761	0	ENST00000382891.5:c.3520G>A	p.Glu1174Lys	p.E1174K	ENST00000382891	NM_133335.3	1174	Gag/Aag																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747895	41747895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	148	618	3	ENST00000226382.2:c.874G>A	p.Ala292Thr	p.A292T	ENST00000226382	NM_003924.3	292	Gcc/Acc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748173	41748173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	94	690	0	ENST00000226382.2:c.596G>A	p.Gly199Asp	p.G199D	ENST00000226382	NM_003924.3	199	gGt/gAt																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749376	41749376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	87	362	0	ENST00000226382.2:c.419C>T	p.Ala140Val	p.A140V	ENST00000226382	NM_003924.3	140	gCg/gTg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139837	55139837	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	153	526	3	ENST00000257290.5:c.1498C>T	p.Arg500Ter	p.R500*	ENST00000257290	NM_006206.4	500	Cga/Tga																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144084	55144084	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	121	454	0	ENST00000257290.5:c.1913A>C	p.Lys638Thr	p.K638T	ENST00000257290	NM_006206.4	638	aAa/aCa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156696	55156696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	109	438	0	ENST00000257290.5:c.3097G>A	p.Asp1033Asn	p.D1033N	ENST00000257290	NM_006206.4	1033	Gac/Aac																																																																															
KIT	3815	MSKCC	GRCh37	4	55565811	55565811	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	69	424	0	ENST00000288135.5:c.635C>A	p.Pro212His	p.P212H	ENST00000288135	NM_000222.2	212	cCt/cAt																																																																															
KIT	3815	MSKCC	GRCh37	4	55589771	55589771	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	91	392	1	ENST00000288135.5:c.1253A>G	p.Tyr418Cys	p.Y418C	ENST00000288135	NM_000222.2	418	tAc/tGc																																																																															
KDR	3791	MSKCC	GRCh37	4	55955545	55955545	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	58	411	0	ENST00000263923.4:c.3400G>T	p.Glu1134Ter	p.E1134*	ENST00000263923	NM_002253.2	1134	Gaa/Taa																																																																															
KDR	3791	MSKCC	GRCh37	4	55961109	55961109	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374755237		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	93	740	0	ENST00000263923.4:c.2831G>A	p.Arg944Gln	p.R944Q	ENST00000263923	NM_002253.2	944	cGa/cAa																																																																															
KDR	3791	MSKCC	GRCh37	4	55961766	55961766	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	131	408	0	ENST00000263923.4:c.2795G>T	p.Arg932Ile	p.R932I	ENST00000263923	NM_002253.2	932	aGa/aTa																																																																															
KDR	3791	MSKCC	GRCh37	4	55964370	55964370	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	105	552	0	ENST00000263923.4:c.2443G>T	p.Glu815Ter	p.E815*	ENST00000263923	NM_002253.2	815	Gaa/Taa																																																																															
KDR	3791	MSKCC	GRCh37	4	55968610	55968610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	89	698	0	ENST00000263923.4:c.2053G>A	p.Glu685Lys	p.E685K	ENST00000263923	NM_002253.2	685	Gaa/Aaa																																																																															
KDR	3791	MSKCC	GRCh37	4	55970948	55970948	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	66	572	0	ENST00000263923.4:c.1849T>A	p.Phe617Ile	p.F617I	ENST00000263923	NM_002253.2	617	Ttc/Atc																																																																															
KDR	3791	MSKCC	GRCh37	4	55981172	55981172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	83	415	0	ENST00000263923.4:c.527G>T	p.Arg176Ile	p.R176I	ENST00000263923	NM_002253.2	176	aGa/aTa																																																																															
KDR	3791	MSKCC	GRCh37	4	55981572	55981572	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	36	218	0	ENST00000263923.4:c.365G>T	p.Arg122Ile	p.R122I	ENST00000263923	NM_002253.2	122	aGa/aTa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467838	66467838	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	27	330	0	ENST00000273854.3:c.431T>G	p.Leu144Arg	p.L144R	ENST00000273854	NM_004439.5	144	cTg/cGg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143226689	143226689	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs149208667		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	43	274	0	ENST00000262992.4:c.425G>A	p.Arg142Gln	p.R142Q	ENST00000262992	NM_001101669.1	142	cGa/cAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244184	153244184	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759610249		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	56	489	0	ENST00000281708.4:c.1973G>A	p.Arg658Gln	p.R658Q	ENST00000281708	NM_033632.3	658	cGa/cAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251901	153251901	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	150	385	0	ENST00000281708.4:c.1105G>T	p.Glu369Ter	p.E369*	ENST00000281708	NM_033632.3	369	Gaa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332915	153332915	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200698994		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	46	425	0	ENST00000281708.4:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000281708	NM_033632.3	14	cGa/cAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509796	187509796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	65	336	0	ENST00000441802.2:c.13717G>A	p.Glu4573Lys	p.E4573K	ENST00000441802	NM_005245.3	4573	Gaa/Aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518228	187518228	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199692977		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	51	418	0	ENST00000441802.2:c.12466G>A	p.Glu4156Lys	p.E4156K	ENST00000441802	NM_005245.3	4156	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521187	187521187	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	62	740	1	ENST00000441802.2:c.11968A>C	p.Asn3990His	p.N3990H	ENST00000441802	NM_005245.3	3990	Aac/Cac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524677	187524677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	238	815	0	ENST00000441802.2:c.11003G>A	p.Arg3668Gln	p.R3668Q	ENST00000441802	NM_005245.3	3668	cGg/cAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187530342	187530342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	22	266	0	ENST00000441802.2:c.10201G>A	p.Glu3401Lys	p.E3401K	ENST00000441802	NM_005245.3	3401	Gaa/Aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628125	187628125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	197	715	0	ENST00000441802.2:c.2857G>A	p.Asp953Asn	p.D953N	ENST00000441802	NM_005245.3	953	Gat/Aat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628882	187628882	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	97	610	0	ENST00000441802.2:c.2100G>T	p.Glu700Asp	p.E700D	ENST00000441802	NM_005245.3	700	gaG/gaT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630114	187630114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	160	588	0	ENST00000441802.2:c.868G>A	p.Ala290Thr	p.A290T	ENST00000441802	NM_005245.3	290	Gca/Aca																																																																															
SDHA	6389	MSKCC	GRCh37	5	228303	228303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	45	243	0	ENST00000264932.6:c.625C>A	p.Leu209Met	p.L209M	ENST00000264932	NM_004168.2	209	Ctg/Atg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295210	1295210	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	99	371	0				ENST00000310581	NM_198253.2																																																																																	
DROSHA	29102	MSKCC	GRCh37	5	31410987	31410987	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1236254462		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	74	664	0	ENST00000344624.3:c.3533G>A	p.Arg1178Gln	p.R1178Q	ENST00000344624		1178	cGa/cAa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31464410	31464410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	94	789	0	ENST00000344624.3:c.2507G>A	p.Arg836Gln	p.R836Q	ENST00000344624		836	cGa/cAa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945694	38945694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	31	276	0	ENST00000357387.3:c.4532G>A	p.Gly1511Glu	p.G1511E	ENST00000357387	NM_152756.3	1511	gGa/gAa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38978694	38978694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	35	386	0	ENST00000357387.3:c.812G>A	p.Gly271Glu	p.G271E	ENST00000357387	NM_152756.3	271	gGa/gAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56152566	56152566	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	78	283	0	ENST00000399503.3:c.622C>T	p.Arg208Ter	p.R208*	ENST00000399503	NM_005921.1	208	Cga/Tga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178443	56178443	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	40	255	0	ENST00000399503.3:c.3416C>A	p.Ser1139Tyr	p.S1139Y	ENST00000399503	NM_005921.1	1139	tCt/tAt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754897	57754897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	61	283	0	ENST00000274289.3:c.293A>G	p.Glu98Gly	p.E98G	ENST00000274289	NM_006622.3	98	gAg/gGg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	33	215	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	35	238	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																															
MSH3	4437	MSKCC	GRCh37	5	79952236	79952236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	39	220	0	ENST00000265081.6:c.244G>A	p.Glu82Lys	p.E82K	ENST00000265081	NM_002439.4	82	Gaa/Aaa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79961018	79961018	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	38	488	0	ENST00000265081.6:c.415G>T	p.Glu139Ter	p.E139*	ENST00000265081	NM_002439.4	139	Gaa/Taa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79974884	79974884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	63	424	0	ENST00000265081.6:c.1312G>A	p.Ala438Thr	p.A438T	ENST00000265081	NM_002439.4	438	Gcg/Acg																																																																															
MSH3	4437	MSKCC	GRCh37	5	80064823	80064823	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	24	197	0	ENST00000265081.6:c.2253+1G>A		p.X751_splice	ENST00000265081	NM_002439.4	751																																																																																
RASA1	5921	MSKCC	GRCh37	5	86649005	86649005	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	52	263	0	ENST00000274376.6:c.1285G>T	p.Glu429Ter	p.E429*	ENST00000274376	NM_002890.2	429	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	128	296	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	90	219	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	25	336	1	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga																																																																															
RAD50	10111	MSKCC	GRCh37	5	131911514	131911514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143802516		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	51	344	0	ENST00000265335.6:c.259C>T	p.Arg87Cys	p.R87C	ENST00000265335		87	Cgt/Tgt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149447843	149447843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	58	927	5	ENST00000286301.3:c.1561G>A	p.Ala521Thr	p.A521T	ENST00000286301	NM_005211.3	521	Gcc/Acc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636719	176636719	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140095431		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	62	398	0	ENST00000439151.2:c.1319G>A	p.Arg440Gln	p.R440Q	ENST00000439151	NM_022455.4	440	cGa/cAa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637034	176637034	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137993153		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	136	571	0	ENST00000439151.2:c.1634C>T	p.Thr545Met	p.T545M	ENST00000439151	NM_022455.4	545	aCg/aTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638875	176638875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	301	652	1	ENST00000439151.2:c.3475C>T	p.Arg1159Trp	p.R1159W	ENST00000439151	NM_022455.4	1159	Cgg/Tgg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176673790	176673790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	99	372	0	ENST00000439151.2:c.4490G>A	p.Gly1497Asp	p.G1497D	ENST00000439151	NM_022455.4	1497	gGc/gAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176678848	176678848	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764613088		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	29	331	0	ENST00000439151.2:c.4759C>T	p.Arg1587Cys	p.R1587C	ENST00000439151	NM_022455.4	1587	Cgc/Tgc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176687063	176687063	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	104	461	0	ENST00000439151.2:c.5040G>T	p.Lys1680Asn	p.K1680N	ENST00000439151	NM_022455.4	1680	aaG/aaT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048764	180048764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	100	1123	1	ENST00000261937.6:c.1798G>A	p.Asp600Asn	p.D600N	ENST00000261937	NM_182925.4	600	Gat/Aat																																																																															
IRF4	3662	MSKCC	GRCh37	6	398855	398855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	78	605	0	ENST00000380956.4:c.665C>T	p.Ala222Val	p.A222V	ENST00000380956	NM_001195286.1	222	gCt/gTt																																																																															
IRF4	3662	MSKCC	GRCh37	6	405092	405092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	108	647	0	ENST00000380956.4:c.1174C>T	p.Pro392Ser	p.P392S	ENST00000380956	NM_001195286.1	392	Cca/Tca																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225626	26225626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	241	546	0	ENST00000360408.1:c.244G>A	p.Asp82Asn	p.D82N	ENST00000360408	NM_003532.2	82	Gac/Aac																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323362	31323363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	122	399	1	ENST00000412585.2:c.626dupC	p.Thr211AspfsTer10	p.T211Dfs*10	ENST00000412585	NM_005514.6	209	cca/ccCa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165351	32165351	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	140	937	0	ENST00000375023.3:c.4777T>G	p.Ser1593Ala	p.S1593A	ENST00000375023	NM_004557.3	1593	Tca/Gca																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166770	32166770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	270	954	3	ENST00000375023.3:c.4468C>T	p.Arg1490Trp	p.R1490W	ENST00000375023	NM_004557.3	1490	Cgg/Tgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188210	32188210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	89	770	0	ENST00000375023.3:c.1131C>A	p.Phe377Leu	p.F377L	ENST00000375023	NM_004557.3	377	ttC/ttA																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818836	32818836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	311	704	1	ENST00000354258.4:c.1115G>A	p.Arg372Gln	p.R372Q	ENST00000354258	NM_000593.5	372	cGa/cAa																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64289970	64289970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	68	335	0	ENST00000370651.3:c.413G>A	p.Arg138His	p.R138H	ENST00000370651	NM_003463.4	138	cGt/cAt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93955139	93955139	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	56	423	0	ENST00000369303.4:c.2759C>G	p.Pro920Arg	p.P920R	ENST00000369303	NM_004440.3	920	cCt/cGt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967185	93967185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	74	443	0	ENST00000369303.4:c.2167C>T	p.Leu723Phe	p.L723F	ENST00000369303	NM_004440.3	723	Ctc/Ttc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93968000	93968000	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	44	338	0	ENST00000369303.4:c.1927G>T	p.Glu643Ter	p.E643*	ENST00000369303	NM_004440.3	643	Gaa/Taa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93974398	93974398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	37	372	0	ENST00000369303.4:c.1656G>T	p.Gln552His	p.Q552H	ENST00000369303	NM_004440.3	552	caG/caT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120461	94120461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	23	319	0	ENST00000369303.4:c.590C>T	p.Ser197Phe	p.S197F	ENST00000369303	NM_004440.3	197	tCt/tTt																																																																															
FYN	2534	MSKCC	GRCh37	6	112041046	112041046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	97	544	0	ENST00000368678.4:c.209C>T	p.Ser70Leu	p.S70L	ENST00000368678		70	tCg/tTg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117642545	117642545	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	184	576	0	ENST00000368508.3:c.5654G>T	p.Arg1885Ile	p.R1885I	ENST00000368508	NM_002944.2	1885	aGa/aTa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117678062	117678062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	38	290	0	ENST00000368508.3:c.3871G>A	p.Glu1291Lys	p.E1291K	ENST00000368508	NM_002944.2	1291	Gaa/Aaa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117686282	117686282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	35	274	0	ENST00000368508.3:c.3059C>A	p.Pro1020His	p.P1020H	ENST00000368508	NM_002944.2	1020	cCt/cAt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117686839	117686839	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	58	366	0	ENST00000368508.3:c.2878G>T	p.Gly960Ter	p.G960*	ENST00000368508	NM_002944.2	960	Gga/Tga																																																																															
ROS1	6098	MSKCC	GRCh37	6	117700235	117700235	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	81	462	1	ENST00000368508.3:c.2584C>A	p.Leu862Ile	p.L862I	ENST00000368508	NM_002944.2	862	Ctt/Att																																																																															
ROS1	6098	MSKCC	GRCh37	6	117706904	117706904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	70	395	2	ENST00000368508.3:c.2246G>T	p.Gly749Val	p.G749V	ENST00000368508	NM_002944.2	749	gGg/gTg																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137525534	137525534	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	96	562	0	ENST00000367739.4:c.481T>C	p.Tyr161His	p.Y161H	ENST00000367739	NM_000416.2	161	Tat/Cat																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137527318	137527318	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	177	582	0	ENST00000367739.4:c.328G>T	p.Glu110Ter	p.E110*	ENST00000367739	NM_000416.2	110	Gaa/Taa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004616	150004616	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150904756		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	178	634	2	ENST00000253339.5:c.1609G>A	p.Ala537Thr	p.A537T	ENST00000253339		537	Gct/Act																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099529	157099529	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	39	220	1	ENST00000346085.5:c.466C>A	p.Gln156Lys	p.Q156K	ENST00000346085	NM_020732.3	156	Cag/Aag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528594	157528594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	94	755	0	ENST00000346085.5:c.6319C>T	p.Arg2107Cys	p.R2107C	ENST00000346085	NM_020732.3	2107	Cgt/Tgt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206852	162206852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	59	452	0	ENST00000366898.1:c.823C>T	p.Arg275Trp	p.R275W	ENST00000366898	NM_004562.2	275	Cgg/Tgg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976742	2976742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	86	983	0	ENST00000396946.4:c.1270C>T	p.Arg424Trp	p.R424W	ENST00000396946	NM_032415.4	424	Cgg/Tgg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976745	2976745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1085	125	988	1	ENST00000396946.4:c.1267C>T	p.Arg423Trp	p.R423W	ENST00000396946	NM_032415.4	423	Cgg/Tgg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976831	2976831	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753594488		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	103	899	0	ENST00000396946.4:c.1181C>T	p.Ser394Leu	p.S394L	ENST00000396946	NM_032415.4	394	tCg/tTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2985503	2985503	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	88	480	0	ENST00000396946.4:c.308A>G	p.Tyr103Cys	p.Y103C	ENST00000396946	NM_032415.4	103	tAc/tGc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2998137	2998137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1247	140	1086	0	ENST00000396946.4:c.4C>T	p.Pro2Ser	p.P2S	ENST00000396946	NM_032415.4	2	Cca/Tca																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026709	6026709	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1162	109	949	1	ENST00000265849.7:c.1687C>T	p.Arg563Ter	p.R563*	ENST00000265849	NM_000535.5	563	Cga/Tga																																																																															
RAC1	5879	MSKCC	GRCh37	7	6438336	6438336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	88	485	0	ENST00000356142.4:c.269A>G	p.Asp90Gly	p.D90G	ENST00000356142	NM_018890.3	90	gAc/gGc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729747	41729747	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	127	547	0	ENST00000242208.4:c.782A>C	p.Lys261Thr	p.K261T	ENST00000242208	NM_002192.2	261	aAg/aCg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730107	41730107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	134	494	0	ENST00000242208.4:c.422C>T	p.Ser141Phe	p.S141F	ENST00000242208	NM_002192.2	141	tCc/tTc																																																																															
HGF	3082	MSKCC	GRCh37	7	81331991	81331991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	65	267	0	ENST00000222390.5:c.2093C>T	p.Ala698Val	p.A698V	ENST00000222390	NM_000601.4	698	gCc/gTc																																																																															
HGF	3082	MSKCC	GRCh37	7	81336607	81336607	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	61	228	0	ENST00000222390.5:c.1615C>T	p.Arg539Ter	p.R539*	ENST00000222390	NM_000601.4	539	Cga/Tga																																																																															
HGF	3082	MSKCC	GRCh37	7	81372710	81372710	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	44	368	0	ENST00000222390.5:c.824A>G	p.Asp275Gly	p.D275G	ENST00000222390	NM_000601.4	275	gAc/gGc																																																																															
CDK6	1021	MSKCC	GRCh37	7	92404108	92404108	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	54	418	0	ENST00000265734.4:c.271G>T	p.Glu91Ter	p.E91*	ENST00000265734	NM_001259.6	91	Gaa/Taa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508940	106508940	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	118	484	0	ENST00000359195.3:c.934G>T	p.Asp312Tyr	p.D312Y	ENST00000359195	NM_002649.2	312	Gac/Tac																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508955	106508955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	57	513	0	ENST00000359195.3:c.949G>A	p.Glu317Lys	p.E317K	ENST00000359195	NM_002649.2	317	Gag/Aag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509063	106509063	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	69	696	0	ENST00000359195.3:c.1057T>C	p.Ser353Pro	p.S353P	ENST00000359195	NM_002649.2	353	Tcc/Ccc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509652	106509652	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	82	568	0	ENST00000359195.3:c.1646A>G	p.Asn549Ser	p.N549S	ENST00000359195	NM_002649.2	549	aAc/aGc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513287	106513287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	85	291	0	ENST00000359195.3:c.2191G>A	p.Asp731Asn	p.D731N	ENST00000359195	NM_002649.2	731	Gac/Aac																																																																															
MET	4233	MSKCC	GRCh37	7	116397714	116397714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	50	487	0	ENST00000397752.3:c.1988C>T	p.Ser663Leu	p.S663L	ENST00000397752	NM_000245.2	663	tCg/tTg																																																																															
MET	4233	MSKCC	GRCh37	7	116418886	116418886	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	49	387	0	ENST00000397752.3:c.3397G>T	p.Asp1133Tyr	p.D1133Y	ENST00000397752	NM_000245.2	1133	Gat/Tat																																																																															
SMO	6608	MSKCC	GRCh37	7	128829231	128829231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	184	773	1	ENST00000249373.3:c.239G>A	p.Gly80Asp	p.G80D	ENST00000249373	NM_005631.4	80	gGc/gAc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148511205	148511205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	67	588	2	ENST00000320356.2:c.1697G>A	p.Arg566His	p.R566H	ENST00000320356	NM_004456.4	566	cGc/cAc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148523708	148523708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	67	248	0	ENST00000320356.2:c.745G>A	p.Glu249Lys	p.E249K	ENST00000320356	NM_004456.4	249	Gaa/Aaa																																																																															
RHEB	6009	MSKCC	GRCh37	7	151174419	151174419	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	43	330	0	ENST00000262187.5:c.275G>T	p.Ser92Ile	p.S92I	ENST00000262187	NM_005614.3	92	aGt/aTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845973	151845973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	86	622	0	ENST00000262189.6:c.13039C>T	p.Pro4347Ser	p.P4347S	ENST00000262189	NM_170606.2	4347	Ccg/Tcg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884466	151884466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	110	317	0	ENST00000262189.6:c.4889C>T	p.Ser1630Leu	p.S1630L	ENST00000262189	NM_170606.2	1630	tCg/tTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945699	151945699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	143	533	0	ENST00000262189.6:c.1820C>T	p.Ser607Phe	p.S607F	ENST00000262189	NM_170606.2	607	tCc/tTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151946988	151946988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	64	349	0	ENST00000262189.6:c.1786C>A	p.Leu596Ile	p.L596I	ENST00000262189	NM_170606.2	596	Ctt/Att																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133386	38133386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	38	333	1	ENST00000317025.8:c.4087C>T	p.Pro1363Ser	p.P1363S	ENST00000317025	NM_023034.1	1363	Ccg/Tcg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38184331	38184331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	83	537	0	ENST00000317025.8:c.1625G>T	p.Arg542Met	p.R542M	ENST00000317025	NM_023034.1	542	aGg/aTg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187330	38187330	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	51	520	0	ENST00000317025.8:c.1147C>T	p.Arg383Ter	p.R383*	ENST00000317025	NM_023034.1	383	Cga/Tga																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38272306	38272306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	94	696	0	ENST00000425967.3:c.2061G>T	p.Lys687Asn	p.K687N	ENST00000425967	NM_001174067.1	687	aaG/aaT																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371683	55371683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	122	909	0	ENST00000297316.4:c.373C>T	p.Arg125Cys	p.R125C	ENST00000297316	NM_022454.3	125	Cgc/Tgc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931826	68931826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	176	470	0	ENST00000288368.4:c.256G>A	p.Glu86Lys	p.E86K	ENST00000288368	NM_024870.2	86	Gaa/Aaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68950493	68950493	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760821149		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	79	355	0	ENST00000288368.4:c.805G>A	p.Asp269Asn	p.D269N	ENST00000288368	NM_024870.2	269	Gat/Aat																																																																															
PREX2	80243	MSKCC	GRCh37	8	69012038	69012038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	138	559	1	ENST00000288368.4:c.2675G>T	p.Arg892Ile	p.R892I	ENST00000288368	NM_024870.2	892	aGa/aTa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69031751	69031751	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	50	540	0	ENST00000288368.4:c.3504+2T>C		p.X1168_splice	ENST00000288368	NM_024870.2	1168																																																																																
PREX2	80243	MSKCC	GRCh37	8	69143584	69143584	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142298071		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	21	269	0	ENST00000288368.4:c.4792G>A	p.Glu1598Lys	p.E1598K	ENST00000288368	NM_024870.2	1598	Gag/Aag																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964514	70964514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	79	703	1	ENST00000276594.2:c.1514G>A	p.Arg505His	p.R505H	ENST00000276594	NM_024504.3	505	cGc/cAc																																																																															
NBN	4683	MSKCC	GRCh37	8	90995064	90995064	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	46	359	0	ENST00000265433.3:c.57G>C	p.Leu19Phe	p.L19F	ENST00000265433	NM_002485.4	19	ttG/ttC																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737651	145737651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1096	99	1079	1	ENST00000428558.2:c.3112C>T	p.Arg1038Cys	p.R1038C	ENST00000428558	NM_004260.3	1038	Cgc/Tgc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341111	8341111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	102	397	0	ENST00000356435.5:c.5105C>T	p.Ala1702Val	p.A1702V	ENST00000356435		1702	gCc/gTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404591	8404591	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	28	290	0	ENST00000356435.5:c.4156T>C	p.Tyr1386His	p.Y1386H	ENST00000356435		1386	Tac/Cac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449746	8449746	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1424143158		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	54	532	0	ENST00000356435.5:c.3967C>T	p.Arg1323Cys	p.R1323C	ENST00000356435		1323	Cgc/Tgc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500903	8500903	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	106	494	0	ENST00000356435.5:c.1979A>G	p.His660Arg	p.H660R	ENST00000356435		660	cAc/cGc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528596	8528596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	37	331	0	ENST00000356435.5:c.536G>A	p.Arg179Gln	p.R179Q	ENST00000356435		179	cGa/cAa																																																																															
TEK	7010	MSKCC	GRCh37	9	27206682	27206682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	87	478	1	ENST00000380036.4:c.2467G>T	p.Asp823Tyr	p.D823Y	ENST00000380036	NM_000459.3	823	Gac/Tac																																																																															
TEK	7010	MSKCC	GRCh37	9	27217701	27217701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	80	532	2	ENST00000380036.4:c.3007C>T	p.Arg1003Cys	p.R1003C	ENST00000380036	NM_000459.3	1003	Cgc/Tgc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570416	87570416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	113	836	0	ENST00000277120.3:c.2156G>A	p.Ser719Asn	p.S719N	ENST00000277120		719	aGc/aAc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635175	87635175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	73	624	0	ENST00000277120.3:c.2227T>C	p.Tyr743His	p.Y743H	ENST00000277120		743	Tac/Cac																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635265	87635265	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	72	542	3	ENST00000277120.3:c.2317C>A	p.Leu773Met	p.L773M	ENST00000277120		773	Ctg/Atg																																																																															
FANCC	2176	MSKCC	GRCh37	9	97869484	97869484	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	101	797	0	ENST00000289081.3:c.1397A>G	p.Asp466Gly	p.D466G	ENST00000289081	NM_000136.2	466	gAc/gGc																																																																															
FANCC	2176	MSKCC	GRCh37	9	97887408	97887408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	146	535	0	ENST00000289081.3:c.956C>T	p.Thr319Met	p.T319M	ENST00000289081	NM_000136.2	319	aCg/aTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229599	98229599	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	54	379	0	ENST00000331920.6:c.2359G>T	p.Glu787Ter	p.E787*	ENST00000331920	NM_000264.3	787	Gaa/Taa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891350	101891350	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	50	493	0	ENST00000374994.4:c.311A>G	p.Asp104Gly	p.D104G	ENST00000374994	NM_004612.2	104	gAc/gGc																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128432165	128432165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	45	352	0	ENST00000265960.3:c.281G>A	p.Arg94Gln	p.R94Q	ENST00000265960	NM_001006617.1	94	cGa/cAa																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128434778	128434778	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	123	660	0	ENST00000265960.3:c.76A>G	p.Met26Val	p.M26V	ENST00000265960	NM_001006617.1	26	Atg/Gtg																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317422	1317422	+	downstream_gene_variant	3'Flank	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	76	576	0				ENST00000381566																																																																																		
CRLF2	64109	MSKCC	GRCh37	X	1321286	1321286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	65	565	1	ENST00000381566.1:c.469G>A	p.Asp157Asn	p.D157N	ENST00000381566		157	Gac/Aac																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15822267	15822267	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	16	119	0	ENST00000307771.7:c.346A>G	p.Arg116Gly	p.R116G	ENST00000307771	NM_005089.3	116	Agg/Ggg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932914	39932914	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147493277		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	190	391	0	ENST00000378444.4:c.1685C>T	p.Ser562Leu	p.S562L	ENST00000378444	NM_001123385.1	562	tCg/tTg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44910961	44910961	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	47	116	0	ENST00000377967.4:c.662A>G	p.Tyr221Cys	p.Y221C	ENST00000377967	NM_021140.2	221	tAt/tGt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938470	44938470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	29	235	0	ENST00000377967.4:c.3018G>T	p.Gln1006His	p.Q1006H	ENST00000377967	NM_021140.2	1006	caG/caT																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223727	53223727	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	147	595	0	ENST00000375401.3:c.3632G>T	p.Gly1211Val	p.G1211V	ENST00000375401	NM_004187.3	1211	gGg/gTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410486	63410486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	74	409	1	ENST00000330258.3:c.2681G>A	p.Arg894His	p.R894H	ENST00000330258	NM_152424.3	894	cGc/cAc																																																																															
AR	367	MSKCC	GRCh37	X	66765797	66765797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	141	583	1	ENST00000374690.3:c.809C>T	p.Ala270Val	p.A270V	ENST00000374690	NM_000044.3	270	gCc/gTc																																																																															
AR	367	MSKCC	GRCh37	X	66765866	66765866	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	150	606	0	ENST00000374690.3:c.878C>A	p.Ser293Tyr	p.S293Y	ENST00000374690	NM_000044.3	293	tCt/tAt																																																																															
AR	367	MSKCC	GRCh37	X	66931388	66931388	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	84	335	0	ENST00000374690.3:c.2030T>C	p.Val677Ala	p.V677A	ENST00000374690	NM_000044.3	677	gTc/gCc																																																																															
AR	367	MSKCC	GRCh37	X	66943614	66943614	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	35	329	1	ENST00000374690.3:c.2694G>T	p.Glu898Asp	p.E898D	ENST00000374690	NM_000044.3	898	gaG/gaT																																																																															
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	193	335	0	ENST00000374080.3:c.130G>A	p.Gly44Ser	p.G44S	ENST00000374080		44	Ggt/Agt																																																																															
ATRX	546	MSKCC	GRCh37	X	76937850	76937850	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs138256318		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	61	282	0	ENST00000373344.5:c.2898G>T	p.Glu966Asp	p.E966D	ENST00000373344	NM_000489.3	966	gaG/gaT																																																																															
ATRX	546	MSKCC	GRCh37	X	76937984	76937984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	55	292	0	ENST00000373344.5:c.2764G>A	p.Asp922Asn	p.D922N	ENST00000373344	NM_000489.3	922	Gat/Aat																																																																															
BTK	695	MSKCC	GRCh37	X	100611795	100611795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	151	275	0	ENST00000308731.7:c.1326C>A	p.Phe442Leu	p.F442L	ENST00000308731	NM_000061.2	442	ttC/ttA																																																																															
XIAP	331	MSKCC	GRCh37	X	123026618	123026618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	70	164	0	ENST00000355640.3:c.1094G>T	p.Arg365Ile	p.R365I	ENST00000355640		365	aGa/aTa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964398	70964398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	45	509	0	ENST00000276594.2:c.1630G>A	p.Asp544Asn	p.D544N	ENST00000276594	NM_024504.3	544	Gat/Aat																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366939	15366939	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	125	621	1	ENST00000263377.2:c.1687delA	p.Ser563AlafsTer21	p.S563Afs*21	ENST00000263377	NM_058243.2	563	Agc/gc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	61	287	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256769	19256769	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	140	672	1	ENST00000162023.5:c.944del	p.Pro315GlnfsTer?	p.P315Qfs*?	ENST00000162023		315	cCa/ca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521298	187521299	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	123	594	0	ENST00000441802.2:c.11856dupT	p.Gly3953TrpfsTer19	p.G3953Wfs*19	ENST00000441802	NM_005245.3	3952	-/T																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	154	791	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	61	305	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	237	933	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099312	157099312	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	70	443	1	ENST00000346085.5:c.249G>C	p.Gln83His	p.Q83H	ENST00000346085	NM_020732.3	83	caG/caC																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1152	230	1025	2	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262079	10262079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	135	567	0	ENST00000340748.4:c.2212G>A	p.Val738Ile	p.V738I	ENST00000340748		738	Gtc/Atc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39644789	39644789	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	59	229	0	ENST00000262039.4:c.2522del	p.Lys841ArgfsTer8	p.K841Rfs*8	ENST00000262039	NM_002647.2	840	Aaa/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	83	374	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	103	500	0	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	145	589	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	86	327	2	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	95	461	0	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	176	661	6	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
SRC	6714	MSKCC	GRCh37	20	36012773	36012773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	79	246	0	ENST00000358208.4:c.217G>A	p.Val73Ile	p.V73I	ENST00000358208		73	Gtc/Atc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954261	32954261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	91	439	2	ENST00000380152.3:c.9235G>A	p.Val3079Ile	p.V3079I	ENST00000380152		3079	Gtt/Att																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100727	8100728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	140	982	2	ENST00000346208.3:c.708dupC	p.Ser237GlnfsTer66	p.S237Qfs*66	ENST00000346208		234	ttc/ttCc																																																																															
POLE	5426	MSKCC	GRCh37	12	133214630	133214630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	103	533	0	ENST00000320574.5:c.5648C>T	p.Ala1883Val	p.A1883V	ENST00000320574	NM_006231.2	1883	gCc/gTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40979319	40979319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	117	623	3	ENST00000373198.4:c.1814C>T	p.Thr605Met	p.T605M	ENST00000373198	NM_133170.3	605	aCg/aTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435293	110435295	+	inframe_deletion	In_Frame_Del	DEL	CGG	CGG	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	66	266	0	ENST00000375856.3:c.3106_3108del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1036	CCG/-																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	193	809	9	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629772	187629772	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	129	545	2	ENST00000441802.2:c.1210A>G	p.Ser404Gly	p.S404G	ENST00000441802	NM_005245.3	404	Agt/Ggt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629770	187629770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	126	536	0	ENST00000441802.2:c.1212del	p.Ser404ArgfsTer10	p.S404Rfs*10	ENST00000441802	NM_005245.3	404	agT/ag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047959	180047959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	226	1018	0	ENST00000261937.6:c.2216G>A	p.Arg739His	p.R739H	ENST00000261937	NM_182925.4	739	cGc/cAc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259464	89259464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	106	481	1	ENST00000336596.2:c.608C>A	p.Pro203Gln	p.P203Q	ENST00000336596	NM_005233.5	203	cCa/cAa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984839	11984839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	85	347	1	ENST00000353533.5:c.385G>A	p.Ala129Thr	p.A129T	ENST00000353533	NM_003010.3	129	Gca/Aca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5239008	5239008	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138765579		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	189	867	0	ENST00000357368.4:c.1771G>A	p.Ala591Thr	p.A591T	ENST00000357368	NM_002850.3	591	Gcc/Acc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125634	47125634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	108	340	1	ENST00000409792.3:c.5636G>A	p.Arg1879His	p.R1879H	ENST00000409792	NM_014159.6	1879	cGc/cAc																																																																															
BLM	641	MSKCC	GRCh37	15	91333927	91333927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	116	485	1	ENST00000355112.3:c.2872G>A	p.Val958Met	p.V958M	ENST00000355112	NM_000057.2	958	Gtg/Atg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612377	1612377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	254	1016	3	ENST00000344749.5:c.1642C>T	p.Arg548Cys	p.R548C	ENST00000344749	NM_001136139.2	548	Cgc/Tgc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845397	42845397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	167	787	0	ENST00000398585.3:c.865C>T	p.Arg289Cys	p.R289C	ENST00000398585	NM_001135099.1	289	Cgc/Tgc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	169	838	5	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370754	55370754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	136	564	0	ENST00000297316.4:c.56C>T	p.Ala19Val	p.A19V	ENST00000297316	NM_022454.3	19	gCg/gTg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128246746	128246746	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	118	591	0	ENST00000265960.3:c.1183C>T	p.Arg395Ter	p.R395*	ENST00000265960	NM_001006617.1	395	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1200	269	1106	0	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324576	31324576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	91	860	1	ENST00000412585.2:c.232C>T	p.Gln78Ter	p.Q78*	ENST00000412585	NM_005514.6	78	Cag/Tag																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353965	15353965	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	64	269	0	ENST00000263377.2:c.2915A>T	p.Gln972Leu	p.Q972L	ENST00000263377	NM_058243.2	972	cAg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229252	36229252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	201	755	0	ENST00000222270.7:c.7942G>A	p.Ala2648Thr	p.A2648T	ENST00000222270	NM_014727.1	2648	Gcc/Acc																																																																															
TP63	8626	MSKCC	GRCh37	3	189587160	189587160	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	80	342	0	ENST00000264731.3:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000264731	NM_003722.4	393	Cga/Tga																																																																															
TCF3	6929	MSKCC	GRCh37	19	1627417	1627417	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201841190		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1094	60	867	0	ENST00000344749.5:c.307G>A	p.Gly103Ser	p.G103S	ENST00000344749	NM_001136139.2	103	Ggt/Agt																																																																															
ATR	545	MSKCC	GRCh37	3	142224106	142224106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	103	324	0	ENST00000350721.4:c.5071G>A	p.Gly1691Arg	p.G1691R	ENST00000350721	NM_001184.3	1691	Gga/Aga																																																																															
E2F3	1871	MSKCC	GRCh37	6	20486919	20486919	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	51	236	0	ENST00000346618.3:c.885-1C>T		p.X295_splice	ENST00000346618	NM_001949.4	295																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151845958	151845959	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	136	560	0	ENST00000262189.6:c.13053dupA	p.Trp4352MetfsTer17	p.W4352Mfs*17	ENST00000262189	NM_170606.2	4351	-/A																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138934	64138934	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	85	434	0	ENST00000334205.4:c.2305del	p.Leu769CysfsTer15	p.L769Cfs*15	ENST00000334205	NM_003942.2	767	ggC/gg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436060	49436060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	152	699	1	ENST00000301067.7:c.5921C>T	p.Thr1974Met	p.T1974M	ENST00000301067	NM_003482.3	1974	aCg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440135	49440136	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	149	653	0	ENST00000301067.7:c.4490_4491del	p.His1497LeufsTer30	p.H1497Lfs*30	ENST00000301067	NM_003482.3	1497	cAC/c																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246416	46246416	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140500006		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	65	285	0	ENST00000334344.6:c.4510C>T	p.Arg1504Trp	p.R1504W	ENST00000334344	NM_152641.2	1504	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175015	112175015	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	58	159	0	ENST00000257430.4:c.3724C>T	p.Gln1242Ter	p.Q1242*	ENST00000257430	NM_000038.5	1242	Cag/Tag																																																																															
AKT2	208	MSKCC	GRCh37	19	40744850	40744850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	150	804	0	ENST00000392038.2:c.670C>T	p.Arg224Cys	p.R224C	ENST00000392038	NM_001626.4	224	Cgc/Tgc																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519422	137519422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	69	261	0	ENST00000367739.4:c.1216G>A	p.Asp406Asn	p.D406N	ENST00000367739	NM_000416.2	406	Gat/Aat																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858561	57858561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	191	795	3	ENST00000228682.2:c.299G>A	p.Arg100His	p.R100H	ENST00000228682	NM_005269.2	100	cGc/cAc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39224088	39224088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	134	541	0	ENST00000402219.2:c.3056G>A	p.Arg1019Gln	p.R1019Q	ENST00000402219	NM_005633.3	1019	cGa/cAa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303270	15303270	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	188	1047	0	ENST00000263388.2:c.258del	p.Cys87ValfsTer149	p.C87Vfs*149	ENST00000263388	NM_000435.2	86	ccC/cc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17947980	17947980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	231	933	0	ENST00000458235.1:c.1744C>T	p.Arg582Trp	p.R582W	ENST00000458235	NM_000215.3	582	Cgg/Tgg																																																																															
RET	5979	MSKCC	GRCh37	10	43606829	43606829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	228	1000	1	ENST00000355710.3:c.1438G>A	p.Glu480Lys	p.E480K	ENST00000355710	NM_020975.4	480	Gaa/Aaa																																																																															
MET	4233	MSKCC	GRCh37	7	116371770	116371770	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	93	347	0	ENST00000397752.3:c.1249C>T	p.Arg417Ter	p.R417*	ENST00000397752	NM_000245.2	417	Cga/Tga																																																																															
EP300	2033	MSKCC	GRCh37	22	41573002	41573002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	236	848	0	ENST00000263253.7:c.5287C>T	p.Arg1763Trp	p.R1763W	ENST00000263253	NM_001429.3	1763	Cgg/Tgg																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073432	8073432	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	140	409	0	ENST00000377482.5:c.1227A>T	p.Lys409Asn	p.K409N	ENST00000377482	NM_018948.3	409	aaA/aaT																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784401	9784401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	157	631	0	ENST00000377346.4:c.2786G>A	p.Arg929His	p.R929H	ENST00000377346	NM_005026.3	929	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089546	27089547	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	204	708	0	ENST00000324856.7:c.2503dup	p.Met835AsnfsTer37	p.M835Nfs*37	ENST00000324856	NM_006015.4	834	-/A																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798262	45798262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	198	672	0	ENST00000372115.3:c.632C>T	p.Ser211Phe	p.S211F	ENST00000372115	NM_001048171.1	211	tCt/tTt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65303781	65303781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	126	401	0	ENST00000342505.4:c.2974G>A	p.Asp992Asn	p.D992N	ENST00000342505	NM_002227.2	992	Gac/Aac																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156837964	156837964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1086	240	1056	1	ENST00000524377.1:c.497G>A	p.Gly166Glu	p.G166E	ENST00000524377	NM_002529.3	166	gGa/gAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118392613	118392613	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	99	397	0	ENST00000534358.1:c.11645G>A	p.Gly3882Asp	p.G3882D	ENST00000534358	NM_005933.3	3882	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433721	49433721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1159	259	1089	1	ENST00000301067.7:c.7832G>A	p.Arg2611His	p.R2611H	ENST00000301067	NM_003482.3	2611	cGc/cAc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518693	103518693	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142438319		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	67	317	1	ENST00000355739.4:c.2281G>A	p.Ala761Thr	p.A761T	ENST00000355739	NM_000123.3	761	Gct/Act																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061711	38061711	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	82	414	0	ENST00000250448.2:c.278T>C	p.Met93Thr	p.M93T	ENST00000250448	NM_004496.3	93	aTg/aCg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88428929	88428929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	41	291	0	ENST00000360948.2:c.2171G>A	p.Cys724Tyr	p.C724Y	ENST00000360948	NM_001012338.2	724	tGt/tAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992246	72992246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	205	921	0	ENST00000268489.5:c.1799C>T	p.Ala600Val	p.A600V	ENST00000268489	NM_006885.3	600	gCc/gTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993363	72993363	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	195	848	0	ENST00000268489.5:c.682C>A	p.Leu228Met	p.L228M	ENST00000268489	NM_006885.3	228	Ctg/Atg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89815164	89815164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	146	712	0	ENST00000389301.3:c.3251G>A	p.Arg1084His	p.R1084H	ENST00000389301	NM_000135.2	1084	cGc/cAc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40441470	40441470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	324	815	0	ENST00000345506.4:c.41C>T	p.Ala14Val	p.A14V	ENST00000345506	NM_003152.3	14	gCg/gTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216499	2216499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1133	243	1003	0	ENST00000398665.3:c.2143G>A	p.Gly715Ser	p.G715S	ENST00000398665	NM_032482.2	715	Ggc/Agc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350545	15350545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	206	956	1	ENST00000263377.2:c.3370C>T	p.Pro1124Ser	p.P1124S	ENST00000263377	NM_058243.2	1124	Ccc/Tcc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909688	50909688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	210	951	0	ENST00000440232.2:c.1408C>T	p.Arg470Cys	p.R470C	ENST00000440232	NM_002691.3	470	Cgc/Tgc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50917120	50917120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	213	1020	0	ENST00000440232.2:c.2372G>A	p.Arg791Gln	p.R791Q	ENST00000440232	NM_002691.3	791	cGg/cAg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082520	16082520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	190	815	1	ENST00000281043.3:c.334C>T	p.Leu112Phe	p.L112F	ENST00000281043	NM_005378.4	112	Ctc/Ttc																																																																															
ALK	238	MSKCC	GRCh37	2	30143024	30143024	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	198	1033	0	ENST00000389048.3:c.502T>C	p.Phe168Leu	p.F168L	ENST00000389048	NM_004304.4	168	Ttc/Ctc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61725902	61725902	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	103	351	0	ENST00000401558.2:c.665T>C	p.Val222Ala	p.V222A	ENST00000401558	NM_003400.3	222	gTa/gCa																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116275	209116275	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	43	210	0	ENST00000345146.2:c.1A>G	p.Met1?	p.M1?	ENST00000345146	NM_005896.2	1	Atg/Gtg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31376805	31376805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	120	580	0	ENST00000328111.2:c.800G>A	p.Gly267Asp	p.G267D	ENST00000328111	NM_006892.3	267	gGc/gAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980795	40980795	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	120	598	0	ENST00000373198.4:c.1691T>C	p.Phe564Ser	p.F564S	ENST00000373198	NM_133170.3	564	tTc/tCc																																																																															
MYD88	4615	MSKCC	GRCh37	3	38181887	38181887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	86	323	0	ENST00000396334.3:c.511C>T	p.Pro171Ser	p.P171S	ENST00000396334	NM_002468.4	171	Cct/Tct																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026841	71026841	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	70	229	0	ENST00000318789.4:c.1381A>G	p.Asn461Asp	p.N461D	ENST00000318789	NM_032682.5	461	Aac/Gac																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134825345	134825345	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	111	548	0	ENST00000398015.3:c.864del	p.Ser289ProfsTer66	p.S289Pfs*66	ENST00000398015	NM_004441.4	287	tgC/tg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181431041	181431041	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	162	848	0	ENST00000325404.1:c.893A>G	p.Tyr298Cys	p.Y298C	ENST00000325404	NM_003106.3	298	tAc/tGc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356306	66356306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	116	442	0	ENST00000273854.3:c.1191G>T	p.Lys397Asn	p.K397N	ENST00000273854	NM_004439.5	397	aaG/aaT																																																																															
TET2	54790	MSKCC	GRCh37	4	106155392	106155392	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	94	383	0	ENST00000380013.4:c.293T>C	p.Val98Ala	p.V98A	ENST00000380013	NM_001127208.2	98	gTt/gCt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86627206	86627206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	64	237	0	ENST00000274376.6:c.581G>A	p.Arg194His	p.R194H	ENST00000274376	NM_002890.2	194	cGc/cAc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86679535	86679535	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	81	311	0	ENST00000274376.6:c.2696T>C	p.Phe899Ser	p.F899S	ENST00000274376	NM_002890.2	899	tTt/tCt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562840	176562840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	130	444	0	ENST00000439151.2:c.736G>A	p.Gly246Ser	p.G246S	ENST00000439151	NM_022455.4	246	Ggc/Agc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721468	176721468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	155	647	0	ENST00000439151.2:c.7099G>A	p.Ala2367Thr	p.A2367T	ENST00000439151	NM_022455.4	2367	Gct/Act																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680932	30680932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	161	721	0	ENST00000376406.3:c.787C>T	p.Pro263Ser	p.P263S	ENST00000376406	NM_014641.2	263	Cct/Tct																																																																															
SESN1	27244	MSKCC	GRCh37	6	109319951	109319952	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	117	434	0	ENST00000436639.2:c.736_737del	p.Leu246LysfsTer3	p.L246Kfs*3	ENST00000436639	NM_014454.2	246	TTa/a																																																																															
PREX2	80243	MSKCC	GRCh37	8	68942878	68942878	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	109	568	0	ENST00000288368.4:c.690C>A	p.His230Gln	p.H230Q	ENST00000288368	NM_024870.2	230	caC/caA																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98268745	98268745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	144	538	2	ENST00000331920.6:c.338C>T	p.Ala113Val	p.A113V	ENST00000331920	NM_000264.3	113	gCg/gTg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135802599	135802599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	69	245	0	ENST00000298552.3:c.199C>T	p.Pro67Ser	p.P67S	ENST00000298552	NM_001162426.1	67	Cca/Tca																																																																															
MED12	9968	MSKCC	GRCh37	X	70349653	70349653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	181	634	0	ENST00000374080.3:c.3815C>T	p.Thr1272Ile	p.T1272I	ENST00000374080		1272	aCa/aTa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437418	110437419	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGT			P-0046179-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			645	85	504	0	ENST00000375856.3:c.980_982dup	p.His327dup	p.H327dup	ENST00000375856	NM_003749.2	327	ctg/cACCtg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986591	36986601	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGGCGGCGT	GCTGGCGGCGT	-			P-0046179-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			640	70	496	0	ENST00000354822.5:c.1088_1098del	p.His363ProfsTer72	p.H363Pfs*72	ENST00000354822	NM_001079668.2	363	cACGCCGCCAGC/c																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120471800	120471800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	130	331	0	ENST00000256646.2:c.3691C>T	p.Arg1231Trp	p.R1231W	ENST00000256646	NM_024408.3	1231	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	182	326	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	58	218	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508064	106508064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	24	178	0	ENST00000359195.3:c.58C>T	p.Arg20Cys	p.R20C	ENST00000359195	NM_002649.2	20	Cgc/Tgc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	132	261	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	77	320	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175324	112175324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	135	146	0	ENST00000257430.4:c.4033G>T	p.Glu1345Ter	p.E1345*	ENST00000257430	NM_000038.5	1345	Gaa/Taa																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006138	22006138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	229	759	0	ENST00000276925.6:c.265C>T	p.Arg89Trp	p.R89W	ENST00000276925	NM_004936.3	89	Cgg/Tgg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128199974	128199974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	218	672	0	ENST00000341105.2:c.1331C>T	p.Pro444Leu	p.P444L	ENST00000341105	NM_032638.4	444	cCg/cTg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67663346	67663346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	88	226	1	ENST00000264010.4:c.1747G>A	p.Val583Ile	p.V583I	ENST00000264010	NM_006565.3	583	Gta/Ata																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120517	70120518	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1170	259	675	0	ENST00000245479.2:c.1520dup	p.Arg508SerfsTer70	p.R508Sfs*70	ENST00000245479	NM_000346.3	507	act/aCct																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45371747	45371747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	22	258	0	ENST00000262160.6:c.1244G>A	p.Arg415Lys	p.R415K	ENST00000262160	NM_005901.5	415	aGa/aAa																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383804	84383804	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	90	394	0	ENST00000321945.7:c.1048G>C	p.Asp350His	p.D350H	ENST00000321945	NM_139076.2	350	Gac/Cac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247175	153247175	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	86	192	0	ENST00000281708.4:c.1627A>T	p.Arg543Ter	p.R543*	ENST00000281708	NM_033632.3	543	Aga/Tga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265322	152265322	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	88	257	0	ENST00000206249.3:c.775C>T	p.Arg259Ter	p.R259*	ENST00000206249	NM_000125.3	259	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0048252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	32	322	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	61	295	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426279	49426279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	49	934	0	ENST00000301067.7:c.12209C>T	p.Ser4070Phe	p.S4070F	ENST00000301067	NM_003482.3	4070	tCt/tTt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206653811	206653811	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	49	704	0	ENST00000367120.3:c.1362C>A	p.Cys454Ter	p.C454*	ENST00000367120	NM_014002.3	454	tgC/tgA																																																																															
MGA	23269	MSKCC	GRCh37	15	41961444	41961444	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	35	442	0	ENST00000219905.7:c.352A>G	p.Asn118Asp	p.N118D	ENST00000219905	NM_001164273.1	118	Aat/Gat																																																																															
TSC2	7249	MSKCC	GRCh37	16	2126567	2126567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	53	676	0	ENST00000219476.3:c.2818C>T	p.Leu940Phe	p.L940F	ENST00000219476	NM_000548.3	940	Ctc/Ttc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557245	187557245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	36	488	0	ENST00000441802.2:c.4117G>A	p.Val1373Ile	p.V1373I	ENST00000441802	NM_005245.3	1373	Gtt/Att																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	55	299	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	58	386	4	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	168	348	1	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	43	256	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	273	698	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	61	744	2	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78681708	78681708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	125	529	2	ENST00000306801.3:c.416G>A	p.Arg139His	p.R139H	ENST00000306801	NM_020761.2	139	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	109	494	0	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781324	3781326	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	206	993	2	ENST00000262367.5:c.5039_5041delCCT	p.Ser1680del	p.S1680del	ENST00000262367	NM_004380.2	1680	tCCTtg/ttg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497245	149497245	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	179	675	0	ENST00000261799.4:c.3073delC	p.Leu1025CysfsTer20	p.L1025Cfs*20	ENST00000261799	NM_002609.3	1025	Ctg/tg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	133	591	0	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	185	834	11	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004721	150004721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	30	412	1	ENST00000253339.5:c.1504C>T	p.Arg502Cys	p.R502C	ENST00000253339		502	Cgt/Tgt																																																																															
MET	4233	MSKCC	GRCh37	7	116339505	116339505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	25	251	0	ENST00000397752.3:c.367G>A	p.Asp123Asn	p.D123N	ENST00000397752	NM_000245.2	123	Gac/Aac																																																																															
MLH1	4292	MSKCC	GRCh37	3	37053348	37053348	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	49	275	0	ENST00000231790.2:c.588delA	p.Lys196AsnfsTer6	p.K196Nfs*6	ENST00000231790	NM_000249.3	195	Aaa/aa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403254	213403254	+	frameshift_variant,start_lost	Frame_Shift_Del	DEL	T	T	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	57	380	2	ENST00000342788.4:c.1delA	p.Met1?	p.M1?	ENST00000342788	NM_005235.2	1	Atg/tg																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733223	74733223	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	162	736	0	ENST00000359995.5:c.20del	p.Pro7LeufsTer7	p.P7Lfs*7	ENST00000359995	NM_001195427.1	7	cCt/ct																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	138	733	5	ENST00000294008.3:c.1406delC	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2096132	2096133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs763525759		P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	131	674	2	ENST00000219066.1:c.374dup	p.Val127GlyfsTer43	p.V127Gfs*43	ENST00000219066	NM_002528.5	125	cca/ccCa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432420	49432420	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	159	764	0	ENST00000301067.7:c.8719del	p.Tyr2907ThrfsTer3	p.Y2907Tfs*3	ENST00000301067	NM_003482.3	2907	Tac/ac																																																																															
ATR	545	MSKCC	GRCh37	3	142297533	142297533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	153	780	0	ENST00000350721.4:c.14G>A	p.Gly5Asp	p.G5D	ENST00000350721	NM_001184.3	5	gGc/gAc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639156	3639156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	147	848	0	ENST00000294008.3:c.4483G>A	p.Ala1495Thr	p.A1495T	ENST00000294008	NM_032444.2	1495	Gcg/Acg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272165	15272165	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	162	775	1	ENST00000263388.2:c.6274del	p.Leu2092TrpfsTer57	p.L2092Wfs*57	ENST00000263388	NM_000435.2	2092	Ctg/tg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778167	3778167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	185	872	2	ENST00000262367.5:c.6881G>A	p.Arg2294Gln	p.R2294Q	ENST00000262367	NM_004380.2	2294	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214714	36214714	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	151	669	0	ENST00000222270.7:c.3145del	p.Ala1049ArgfsTer133	p.A1049Rfs*133	ENST00000222270	NM_014727.1	1047	cGg/cg																																																																															
INSR	3643	MSKCC	GRCh37	19	7125371	7125371	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55882714		P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	240	718	1	ENST00000302850.5:c.3181G>A	p.Glu1061Lys	p.E1061K	ENST00000302850	NM_000208.2	1061	Gag/Aag																																																																															
POLE	5426	MSKCC	GRCh37	12	133244184	133244184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	154	496	0	ENST00000320574.5:c.2224C>T	p.Arg742Cys	p.R742C	ENST00000320574	NM_006231.2	742	Cgt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250842	153250842	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	57	266	0	ENST00000281708.4:c.1218G>A	p.Trp406Ter	p.W406*	ENST00000281708	NM_033632.3	406	tgG/tgA																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046350	69046350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	94	391	0	ENST00000288368.4:c.3823G>A	p.Val1275Ile	p.V1275I	ENST00000288368	NM_024870.2	1275	Gtc/Atc																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724362	112724362	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	74	422	0	ENST00000369452.4:c.252del	p.Lys84AsnfsTer7	p.K84Nfs*7	ENST00000369452	NM_007373.3	82	agA/ag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31016154	31016154	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777619874		P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	97	449	1	ENST00000375687.4:c.400G>A	p.Ala134Thr	p.A134T	ENST00000375687	NM_015338.5	134	Gca/Aca																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39325212	39325212	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	106	516	0	ENST00000373001.3:c.107A>C	p.Glu36Ala	p.E36A	ENST00000373001	NM_022157.3	36	gAg/gCg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120461131	120461131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	80	399	0	ENST00000256646.2:c.5827G>T	p.Asp1943Tyr	p.D1943Y	ENST00000256646	NM_024408.3	1943	Gat/Tat																																																																															
PARP1	142	MSKCC	GRCh37	1	226570883	226570883	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	60	332	0	ENST00000366794.5:c.1013A>T	p.Glu338Val	p.E338V	ENST00000366794	NM_001618.3	338	gAa/gTa																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134267	41134267	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1028000118		P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	76	328	0	ENST00000379561.5:c.1361A>G	p.Gln454Arg	p.Q454R	ENST00000379561	NM_002015.3	454	cAg/cGg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435365	110435367	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	81	505	0	ENST00000375856.3:c.3034_3036del	p.Ser1012del	p.S1012del	ENST00000375856	NM_003749.2	1012	TCC/-																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43708581	43708582	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	131	438	0	ENST00000382044.4:c.4714dup	p.Glu1572GlyfsTer7	p.E1572Gfs*7	ENST00000382044	NM_001141980.1	1572	gaa/gGaa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3830785	3830785	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	113	428	0	ENST00000262367.5:c.1771G>T	p.Gly591Cys	p.G591C	ENST00000262367	NM_004380.2	591	Ggc/Tgc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89858453	89858453	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	153	477	0	ENST00000389301.3:c.1107G>T	p.Glu369Asp	p.E369D	ENST00000389301	NM_000135.2	369	gaG/gaT																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110207	8110207	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	112	516	0	ENST00000585124.1:c.399-1G>A		p.X133_splice	ENST00000585124	NM_004217.3	133																																																																																
SOX9	6662	MSKCC	GRCh37	17	70119743	70119743	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	109	447	0	ENST00000245479.2:c.745A>G	p.Lys249Glu	p.K249E	ENST00000245479	NM_000346.3	249	Aag/Gag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265705	10265705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	47	388	0	ENST00000340748.4:c.1472C>T	p.Pro491Leu	p.P491L	ENST00000340748		491	cCc/cTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599890	10599890	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	181	788	0	ENST00000171111.5:c.1686C>A	p.His562Gln	p.H562Q	ENST00000171111	NM_203500.1	562	caC/caA																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630344	47630344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	164	722	1	ENST00000233146.2:c.14C>T	p.Pro5Leu	p.P5L	ENST00000233146	NM_000251.2	5	cCg/cTg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57466784	57466784	+	frameshift_variant,start_lost	Frame_Shift_Del	DEL	G	G	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	35	145	0	ENST00000371085.3:c.5del	p.Gly2AlafsTer56	p.G2Afs*56	ENST00000371085	NM_000516.4	1	atG/at																																																																															
EP300	2033	MSKCC	GRCh37	22	41574392	41574392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	114	554	0	ENST00000263253.7:c.6677G>A	p.Arg2226Gln	p.R2226Q	ENST00000263253	NM_001429.3	2226	cGg/cAg																																																																															
ATR	545	MSKCC	GRCh37	3	142281641	142281641	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	68	362	0	ENST00000350721.4:c.603T>A	p.Asn201Lys	p.N201K	ENST00000350721	NM_001184.3	201	aaT/aaA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201754	66201754	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	93	389	0	ENST00000273854.3:c.2748G>T	p.Gln916His	p.Q916H	ENST00000273854	NM_004439.5	916	caG/caT																																																																															
RASA1	5921	MSKCC	GRCh37	5	86681151	86681151	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	33	199	0	ENST00000274376.6:c.2792T>A	p.Ile931Lys	p.I931K	ENST00000274376	NM_002890.2	931	aTa/aAa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149437151	149437151	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	46	546	0	ENST00000286301.3:c.2137A>T	p.Ser713Cys	p.S713C	ENST00000286301	NM_005211.3	713	Agt/Tgt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520552	176520552	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	196	775	0	ENST00000292408.4:c.1397G>T	p.Arg466Met	p.R466M	ENST00000292408	NM_213647.1	466	aGg/aTg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324063	31324063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	182	465	0	ENST00000412585.2:c.500C>T	p.Thr167Ile	p.T167I	ENST00000412585	NM_005514.6	167	aCc/aTc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324094	31324094	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	31	291	0	ENST00000412585.2:c.469T>C	p.Trp157Arg	p.W157R	ENST00000412585	NM_005514.6	157	Tgg/Cgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32182010	32182010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	177	718	0	ENST00000375023.3:c.2044G>T	p.Gly682Cys	p.G682C	ENST00000375023	NM_004557.3	682	Ggt/Tgt																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15840947	15840947	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	81	159	0	ENST00000307771.7:c.1031G>T	p.Arg344Ile	p.R344I	ENST00000307771	NM_005089.3	344	aGa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0048258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	100	593	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0048258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	18	373	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0048258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	75	189	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953022	2953022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	117	817	0	ENST00000396946.4:c.2918G>A	p.Arg973His	p.R973H	ENST00000396946	NM_032415.4	973	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0048258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	117	321	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112174241	112174241	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	103	228	0	ENST00000257430.4:c.2950G>T	p.Glu984Ter	p.E984*	ENST00000257430	NM_000038.5	984	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175551	112175552	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0048258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	90	244	0	ENST00000257430.4:c.4260_4261del	p.Ser1421Ter	p.S1421*	ENST00000257430	NM_000038.5	1420	ccCAgt/ccgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0048260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	629	547	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495507	56495507	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	69	570	0	ENST00000267101.3:c.3697G>T	p.Ala1233Ser	p.A1233S	ENST00000267101	NM_001982.3	1233	Gcc/Tcc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026033	48026033	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	250	357	0	ENST00000234420.5:c.911T>A	p.Val304Glu	p.V304E	ENST00000234420	NM_000179.2	304	gTg/gAg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591243	67591393	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCAGGTGGTTGACTCAAAAAGGTGTTCGGCAAAAGAAGTTGAACGAGTGGTTGGGCAATGAAAACACTGAAGAGTAAGTAGTTACTAAAGATGGTGATAGCAGAAGATTTTTCTCATTTTAGGAAAATGCATGACTTGCTTTGTTTTTAG	TTCAGGTGGTTGACTCAAAAAGGTGTTCGGCAAAAGAAGTTGAACGAGTGGTTGGGCAATGAAAACACTGAAGAGTAAGTAGTTACTAAAGATGGTGATAGCAGAAGATTTTTCTCATTTTAGGAAAATGCATGACTTGCTTTGTTTTTAG	-			P-0048260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	12	283	0	ENST00000274335.5:c.1746-5_1814+77del		p.X582_splice	ENST00000274335		582																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	28	316	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46527668	46527668	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	40	338	0	ENST00000262741.5:c.697C>T	p.Gln233Ter	p.Q233*	ENST00000262741	NM_003629.3	233	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578225	7578225	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	77	638	0	ENST00000269305.4:c.624del	p.Asp208GlufsTer39	p.D208Efs*39	ENST00000269305	NM_001126112.2	208	gaC/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	63	354	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	49	353	0	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593491	48593494	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0048279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	26	242	0	ENST00000342988.3:c.1245_1248del	p.Asp415GlufsTer20	p.D415Efs*20	ENST00000342988	NM_005359.5	414	ttAGAC/tt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59770791	59770791	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	35	235	0	ENST00000259008.2:c.2575G>A	p.Gly859Arg	p.G859R	ENST00000259008	NM_032043.2	859	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0048313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	150	811	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0048313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	33	214	1	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
KDR	3791	MSKCC	GRCh37	4	55968597	55968597	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34038364		P-0048313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	35	649	3	ENST00000263923.4:c.2066C>T	p.Thr689Met	p.T689M	ENST00000263923	NM_002253.2	689	aCg/aTg																																																																															
WT1	7490	MSKCC	GRCh37	11	32439147	32439147	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	70	525	0	ENST00000332351.3:c.926T>A	p.Met309Lys	p.M309K	ENST00000332351	NM_024426.4	309	aTg/aAg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739669	41739669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	50	653	0	ENST00000242208.4:c.304G>A	p.Glu102Lys	p.E102K	ENST00000242208	NM_002192.2	102	Gag/Aag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373380	118373380	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	44	475	0	ENST00000534358.1:c.6773G>C	p.Ser2258Thr	p.S2258T	ENST00000534358	NM_005933.3	2258	aGt/aCt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877195	151877195	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	62	403	0	ENST00000262189.6:c.7166A>C	p.Glu2389Ala	p.E2389A	ENST00000262189	NM_170606.2	2389	gAa/gCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242483	+	protein_altering_variant	In_Frame_Del	DEL	ATTAAGAGAAGCAACA	ATTAAGAGAAGCAACA	C			P-0048315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	30	363	2	ENST00000275493.2:c.2238_2253delinsC	p.Glu746_Thr751delinsAsp	p.E746_T751delinsD	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACA/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	275	657	0	ENST00000269305.4:c.581T>A	p.Leu194His	p.L194H	ENST00000269305	NM_001126112.2	194	cTt/cAt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38273416	38273416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	217	943	1	ENST00000425967.3:c.1919G>A	p.Arg640Gln	p.R640Q	ENST00000425967	NM_001174067.1	640	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175247	112175248	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0048320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	162	196	0	ENST00000257430.4:c.3959_3960dup	p.Ser1321Ter	p.S1321*	ENST00000257430	NM_000038.5	1319	cct/ccTGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578188	7578188	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	545	810	0	ENST00000269305.4:c.661G>T	p.Glu221Ter	p.E221*	ENST00000269305	NM_001126112.2	221	Gag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0047583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			842	1359	468	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			760	198	584	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221822	55221822	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149840192		P-0047583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1267	1898	768	2	ENST00000275493.2:c.866C>T	p.Ala289Val	p.A289V	ENST00000275493	NM_005228.3	289	gCc/gTc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852523	63852523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			554	35	370	1	ENST00000279873.7:c.3301C>T	p.His1101Tyr	p.H1101Y	ENST00000279873	NM_032199.2	1101	Cat/Tat																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121437369	121437369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			976	99	765	0	ENST00000257555.6:c.1707C>A	p.Ser569Arg	p.S569R	ENST00000257555		569	agC/agA																																																																															
PALB2	79728	MSKCC	GRCh37	16	23632778	23632778	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			476	38	345	0	ENST00000261584.4:c.3018G>C	p.Leu1006Phe	p.L1006F	ENST00000261584	NM_024675.3	1006	ttG/ttC																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040983	47040984	+	frameshift_variant	Frame_Shift_Ins	INS	CC	CC	GCT			P-0047583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			518	145	423	1	ENST00000329236.7:c.1279_1280delinsGCT	p.Pro427AlafsTer13	p.P427Afs*13	ENST00000329236	NM_001204466.1	427	CCt/GCTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	204	1127	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0048232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	110	1066	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173283	112173284	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0048232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	27	171	0	ENST00000257430.4:c.1993_1994delTT	p.Leu665IlefsTer8	p.L665Ifs*8	ENST00000257430	NM_000038.5	664	acTTta/acta																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168694	32168694	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143040647		P-0048232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	212	1203	2	ENST00000375023.3:c.4229G>A	p.Arg1410His	p.R1410H	ENST00000375023	NM_004557.3	1410	cGc/cAc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982309	201982309	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0048232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	346	1131	0	ENST00000359651.3:c.689-1G>C		p.X230_splice	ENST00000359651		230																																																																																
CYLD	1540	MSKCC	GRCh37	16	50815172	50815172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	149	577	0	ENST00000398568.2:c.1525G>A	p.Gly509Ser	p.G509S	ENST00000398568	NM_001042412.1	509	Ggc/Agc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149441118	149441118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	249	1122	0	ENST00000286301.3:c.1794G>T	p.Glu598Asp	p.E598D	ENST00000286301	NM_005211.3	598	gaG/gaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	18	268	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	45	811	0	ENST00000269305.4:c.379T>C	p.Ser127Pro	p.S127P	ENST00000269305	NM_001126112.2	127	Tcc/Ccc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575121	48575122	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	18	244	0	ENST00000342988.3:c.320dup	p.Asn107LysfsTer2	p.N107Kfs*2	ENST00000342988	NM_005359.5	105	-/A																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974759	21974759	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	19	315	0	ENST00000304494.5:c.68del	p.Gly23ValfsTer3	p.G23Vfs*3	ENST00000304494	NM_000077.4	23	gGt/gt																																																																															
MGA	23269	MSKCC	GRCh37	15	42040891	42040891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	23	468	0	ENST00000219905.7:c.5269C>T	p.Arg1757Cys	p.R1757C	ENST00000219905	NM_001164273.1	1757	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	113	415	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0048240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	126	162	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0048240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	137	288	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247165	153247165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	48	145	0	ENST00000281708.4:c.1637C>T	p.Ser546Leu	p.S546L	ENST00000281708	NM_033632.3	546	tCa/tTa																																																																															
BCL6	604	MSKCC	GRCh37	3	187444519	187444519	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	151	451	1	ENST00000232014.4:c.1708G>A	p.Gly570Ser	p.G570S	ENST00000232014	NM_001130845.1	570	Ggt/Agt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374945	45374945	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	283	299	0	ENST00000262160.6:c.898G>C	p.Asp300His	p.D300H	ENST00000262160	NM_005901.5	300	Gat/Cat																																																																															
ERF	2077	MSKCC	GRCh37	19	42754077	42754077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	151	396	0	ENST00000222329.4:c.275G>A	p.Arg92His	p.R92H	ENST00000222329	NM_006494.2	92	cGc/cAc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482861	67482861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	114	342	0	ENST00000327367.4:c.1265C>T	p.Ser422Phe	p.S422F	ENST00000327367	NM_005902.3	422	tCc/tTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245547	153245547	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0048240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	64	183	0	ENST00000281708.4:c.1645-1G>C		p.X549_splice	ENST00000281708	NM_033632.3	549																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176519674	176519674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	200	695	0	ENST00000292408.4:c.946G>A	p.Glu316Lys	p.E316K	ENST00000292408	NM_213647.1	316	Gag/Aag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041677	47041677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	160	475	0	ENST00000329236.7:c.1668G>C	p.Lys556Asn	p.K556N	ENST00000329236	NM_001204466.1	556	aaG/aaC																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0048245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	518	774	1	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0048245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	102	545	0	ENST00000269305.4:c.365_366delTG	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																															
ATRX	546	MSKCC	GRCh37	X	76876001	76876001	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0048245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	15	203	0	ENST00000373344.5:c.5135-1G>A		p.X1712_splice	ENST00000373344	NM_000489.3	1712																																																																																
GLI1	2735	MSKCC	GRCh37	12	57865756	57865756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1349	297	693	0	ENST00000228682.2:c.3233C>T	p.Ser1078Phe	p.S1078F	ENST00000228682	NM_005269.2	1078	tCt/tTt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181853	56181853	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0048245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	23	244	0	ENST00000399503.3:c.4077T>A	p.Tyr1359Ter	p.Y1359*	ENST00000399503	NM_005921.1	1359	taT/taA																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0048246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	103	257	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0048246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	249	632	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273905	10273905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	212	813	1	ENST00000330684.3:c.364G>A	p.Val122Ile	p.V122I	ENST00000330684	NM_001134407.1	122	Gtc/Atc																																																																															
ATRX	546	MSKCC	GRCh37	X	76907804	76907804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	22	110	0	ENST00000373344.5:c.4357G>A	p.Glu1453Lys	p.E1453K	ENST00000373344	NM_000489.3	1453	Gag/Aag																																																																															
BIRC3	330	MSKCC	GRCh37	11	102207817	102207817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	67	127	0	ENST00000263464.3:c.1799G>A	p.Arg600His	p.R600H	ENST00000263464	NM_001165.4	600	cGt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447415	49447415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	92	512	2	ENST00000301067.7:c.683G>A	p.Arg228His	p.R228H	ENST00000301067	NM_003482.3	228	cGc/cAc																																																																															
MSH3	4437	MSKCC	GRCh37	5	80171569	80171569	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0048246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	24	205	0	ENST00000265081.6:c.3303-1G>A		p.X1101_splice	ENST00000265081	NM_002439.4	1101																																																																																
APC	324	MSKCC	GRCh37	5	112174476	112174477	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0048246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	111	152	0	ENST00000257430.4:c.3186_3187del	p.Ser1063Ter	p.S1063*	ENST00000257430	NM_000038.5	1062	cAA/c																																																																															
BRAF	673	MSKCC	GRCh37	7	140508739	140508739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	43	373	0	ENST00000288602.6:c.561G>A	p.Met187Ile	p.M187I	ENST00000288602	NM_004333.4	187	atG/atA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061207	38061207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	27	681	2	ENST00000250448.2:c.782G>A	p.Arg261His	p.R261H	ENST00000250448	NM_004496.3	261	cGc/cAc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137850	64137850	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	79	1166	0	ENST00000334205.4:c.1951G>T	p.Val651Phe	p.V651F	ENST00000334205	NM_003942.2	651	Gtc/Ttc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618693	37618694	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0048262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	22	551	0	ENST00000447079.4:c.371_372del	p.Lys124SerfsTer2	p.K124Sfs*2	ENST00000447079	NM_015083.1	123	ctAAaa/ctaa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37671982	37671982	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0048262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	56	352	0	ENST00000447079.4:c.2769-2A>G		p.X923_splice	ENST00000447079	NM_015083.1	923																																																																																
HIST1H3J	8356	MSKCC	GRCh37	6	27858363	27858363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	77	792	0	ENST00000359303.2:c.208C>T	p.Arg70Cys	p.R70C	ENST00000359303	NM_003535.2	70	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	42	312	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RB1	5925	MSKCC	GRCh37	13	48953742	48953742	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	26	177	0	ENST00000267163.4:c.1346del	p.Gly449GlufsTer8	p.G449Efs*8	ENST00000267163	NM_000321.2	449	Gga/ga																																																																															
HGF	3082	MSKCC	GRCh37	7	81374316	81374316	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0048267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	51	213	0	ENST00000222390.5:c.746G>T	p.Arg249Ile	p.R249I	ENST00000222390	NM_000601.4	249	aGa/aTa																																																																															
E2F3	1871	MSKCC	GRCh37	6	20480168	20480168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	188	249	0	ENST00000346618.3:c.485G>A	p.Arg162Gln	p.R162Q	ENST00000346618	NM_001949.4	162	cGa/cAa																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643214	38643214	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs76128643		P-0048267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	24	220	0	ENST00000299084.4:c.685-1G>T		p.X229_splice	ENST00000299084	NM_152594.2	229																																																																																
NTRK3	4916	MSKCC	GRCh37	15	88679212	88679213	+	missense_variant	Missense_Mutation	DNP	AC	AC	CG			P-0048267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	76	567	0	ENST00000360948.2:c.824_825delinsCG	p.Ser275Thr	p.S275T	ENST00000360948	NM_001012338.2	275	aGT/aCG																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021193	31021193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	102	489	1	ENST00000375687.4:c.1192G>T	p.Gly398Cys	p.G398C	ENST00000375687	NM_015338.5	398	Ggt/Tgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385164	41385164	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	177	702	0	ENST00000373198.4:c.797G>C	p.Arg266Pro	p.R266P	ENST00000373198	NM_133170.3	266	cGc/cCc																																																																															
ABL1	25	MSKCC	GRCh37	9	133730212	133730212	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	78	387	0	ENST00000318560.5:c.278A>T	p.Tyr93Phe	p.Y93F	ENST00000318560	NM_005157.4	93	tAt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579538	7579550	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	ATATCGTCCGGGG	ATATCGTCCGGGG	CT			P-0048267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	187	752	2	ENST00000269305.4:c.137_149delinsAG	p.Ser46Ter	p.S46*	ENST00000269305	NM_001126112.2	46	tCCCCGGACGATATt/tAGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0048268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	45	407	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0048268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	77	445	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	24	316	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0048269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	28	403	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28963952	28963952	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	28	286	0	ENST00000282397.4:c.1950G>T	p.Lys650Asn	p.K650N	ENST00000282397	NM_002019.4	650	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	73	657	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106078	27106078	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	44	499	0	ENST00000324856.7:c.5693delC	p.Pro1898HisfsTer25	p.P1898Hfs*25	ENST00000324856	NM_006015.4	1897	Ccc/cc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	86	827	9	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5207955	5207955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	63	914	0	ENST00000357368.4:c.5756G>A	p.Arg1919Gln	p.R1919Q	ENST00000357368	NM_002850.3	1919	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097622	27097622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	36	410	0	ENST00000324856.7:c.3216del	p.Lys1072AsnfsTer21	p.K1072Nfs*21	ENST00000324856	NM_006015.4	1071	Aaa/aa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47656951	47656951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	26	262	0	ENST00000233146.2:c.1147C>T	p.Arg383Ter	p.R383*	ENST00000233146	NM_000251.2	383	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	36	356	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448307	56448307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	73	803	4	ENST00000407977.2:c.340C>T	p.Arg114Trp	p.R114W	ENST00000407977		114	Cgg/Tgg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855573	45855573	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746618110		P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	65	798	1	ENST00000391945.4:c.2084G>A	p.Arg695His	p.R695H	ENST00000391945	NM_000400.3	695	cGc/cAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413105	63413105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	86	423	1	ENST00000330258.3:c.62G>A	p.Arg21His	p.R21H	ENST00000330258	NM_152424.3	21	cGt/cAt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911508	134911508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201816783		P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	37	503	1	ENST00000398015.3:c.1973C>T	p.Ser658Leu	p.S658L	ENST00000398015	NM_004441.4	658	tCg/tTg																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66782062	66782062	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	25	243	1	ENST00000307102.5:c.1034del	p.Asn345ThrfsTer8	p.N345Tfs*8	ENST00000307102	NM_002755.3	343	atA/at																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18699324	18699324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	20	231	0	ENST00000266497.5:c.3425G>A	p.Arg1142His	p.R1142H	ENST00000266497		1142	cGt/cAt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962378	2962378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	56	710	0	ENST00000396946.4:c.2159G>A	p.Arg720Gln	p.R720Q	ENST00000396946	NM_032415.4	720	cGa/cAa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15284906	15284906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1424	83	984	3	ENST00000263388.2:c.4709G>A	p.Arg1570His	p.R1570H	ENST00000263388	NM_000435.2	1570	cGt/cAt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31385105	31385105	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	56	613	1	ENST00000328111.2:c.1490G>A	p.Arg497Gln	p.R497Q	ENST00000328111	NM_006892.3	497	cGg/cAg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932807	39932807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	74	442	0	ENST00000378444.4:c.1792G>A	p.Val598Met	p.V598M	ENST00000378444	NM_001123385.1	598	Gtg/Atg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5265144	5265144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	65	961	2	ENST00000357368.4:c.443G>A	p.Arg148Gln	p.R148Q	ENST00000357368	NM_002850.3	148	cGg/cAg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2191047	2191047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	35	495	2	ENST00000398665.3:c.301C>T	p.Arg101Trp	p.R101W	ENST00000398665	NM_032482.2	101	Cgg/Tgg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52705261	52705261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	47	468	1	ENST00000322088.6:c.143G>A	p.Arg48Gln	p.R48Q	ENST00000322088	NM_014225.5	48	cGa/cAa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87636257	87636257	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	40	584	1	ENST00000277120.3:c.2422C>T	p.Arg808Ter	p.R808*	ENST00000277120		808	Cga/Tga																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931700	39931700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	52	337	1	ENST00000378444.4:c.2899G>A	p.Ala967Thr	p.A967T	ENST00000378444	NM_001123385.1	967	Gcc/Acc																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260145	149260145	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200641813		P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	40	463	0	ENST00000360632.3:c.748C>T	p.Arg250Cys	p.R250C	ENST00000360632	NM_015472.4	250	Cgc/Tgc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246078852	246078852	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150058397		P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	57	613	0	ENST00000388985.4:c.793C>T	p.Arg265Cys	p.R265C	ENST00000388985		265	Cgt/Tgt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71945585	71945585	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	38	426	0	ENST00000298229.2:c.2343del	p.Phe781LeufsTer64	p.F781Lfs*64	ENST00000298229	NM_001567.3	781	Ttt/tt																																																																															
MGA	23269	MSKCC	GRCh37	15	42032339	42032339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	51	444	2	ENST00000219905.7:c.4523G>A	p.Gly1508Asp	p.G1508D	ENST00000219905	NM_001164273.1	1508	gGc/gAc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119736	17119737	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	61	823	0	ENST00000285071.4:c.1257dup	p.Leu420AlafsTer36	p.L420Afs*36	ENST00000285071	NM_144997.5	419	-/G																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231392	5231392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	56	906	0	ENST00000357368.4:c.2084C>T	p.Thr695Met	p.T695M	ENST00000357368	NM_002850.3	695	aCg/aTg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279616	18279616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	63	820	0	ENST00000222254.8:c.1889C>T	p.Thr630Met	p.T630M	ENST00000222254	NM_005027.3	630	aCg/aTg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637384	47637384	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	61	619	0	ENST00000233146.2:c.518T>A	p.Leu173Gln	p.L173Q	ENST00000233146	NM_000251.2	173	cTa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112177641	112177641	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	23	275	0	ENST00000257430.4:c.6350A>G	p.Gln2117Arg	p.Q2117R	ENST00000257430	NM_000038.5	2117	cAa/cGa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026723	6026723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	54	628	0	ENST00000265849.7:c.1673C>T	p.Thr558Ile	p.T558I	ENST00000265849	NM_000535.5	558	aCc/aTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395282	139395282	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	92	913	0	ENST00000277541.6:c.5656A>G	p.Met1886Val	p.M1886V	ENST00000277541	NM_017617.3	1886	Atg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	115	351	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519324	176519324	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	137	794	0	ENST00000292408.4:c.730C>T	p.Arg244Trp	p.R244W	ENST00000292408	NM_213647.1	244	Cgg/Tgg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223957	2223957	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	151	1013	0	ENST00000326181.6:c.1171A>G	p.Thr391Ala	p.T391A	ENST00000326181	NM_032271.2	391	Acc/Gcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	19	300	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	34	607	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970905	21970905	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	35	834	0	ENST00000304494.5:c.453del	p.Ser152GlnfsTer41	p.S152Qfs*41	ENST00000304494	NM_000077.4	151	ccC/cc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0048285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	101	322	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970971	21970971	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0048285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	108	813	0	ENST00000304494.5:c.387C>G	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taC/taG																																																																															
MGA	23269	MSKCC	GRCh37	15	42019596	42019615	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATCCTGTGGTAAGTCTGGA	AATCCTGTGGTAAGTCTGGA	-			P-0048285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	40	345	0	ENST00000219905.7:c.3650_3657+12del		p.X1217_splice	ENST00000219905	NM_001164273.1	1217																																																																																
ATRX	546	MSKCC	GRCh37	X	76764065	76764066	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0048285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	54	447	0	ENST00000373344.5:c.7242_7243delinsAA	p.Gln2415Lys	p.Q2415K	ENST00000373344	NM_000489.3	2414	ctCCag/ctAAag																																																																															
NF2	4771	MSKCC	GRCh37	22	30050677	30050677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	182	398	0	ENST00000338641.4:c.479G>A	p.Arg160Gln	p.R160Q	ENST00000338641	NM_000268.3	160	cGg/cAg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851680	63851680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	197	506	1	ENST00000279873.7:c.2458C>T	p.Pro820Ser	p.P820S	ENST00000279873	NM_032199.2	820	Ccc/Tcc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998801	100998801	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	142	966	0	ENST00000325455.5:c.1001G>T	p.Gly334Val	p.G334V	ENST00000325455	NM_001202474.3	334	gGg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577573	7577573	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0047763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	259	680	0	ENST00000269305.4:c.708C>G	p.Tyr236Ter	p.Y236*	ENST00000269305	NM_001126112.2	236	taC/taG																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793382	18793382	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs77070108		P-0047763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	91	340	3	ENST00000266497.5:c.4079C>T	p.Ala1360Val	p.A1360V	ENST00000266497		1360	gCg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878988	151878988	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138373177		P-0047763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	81	509	0	ENST00000262189.6:c.5957G>A	p.Arg1986Gln	p.R1986Q	ENST00000262189	NM_170606.2	1986	cGg/cAg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999191	100999191	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	427	1204	0	ENST00000325455.5:c.611A>C	p.His204Pro	p.H204P	ENST00000325455	NM_001202474.3	204	cAc/cCc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749373	41749373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	67	401	0	ENST00000226382.2:c.422G>A	p.Arg141Gln	p.R141Q	ENST00000226382	NM_003924.3	141	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0047790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	510	676	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178947827	178947827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	18	231	1	ENST00000263967.3:c.2702G>T	p.Cys901Phe	p.C901F	ENST00000263967	NM_006218.2	901	tGt/tTt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0047790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	138	132	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275420	38275420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	584	642	1	ENST00000425967.3:c.1613G>A	p.Arg538His	p.R538H	ENST00000425967	NM_001174067.1	538	cGt/cAt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81929465	81929465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	166	454	0	ENST00000359376.3:c.1126C>T	p.Arg376Trp	p.R376W	ENST00000359376	NM_002661.3	376	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	178	291	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0047847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	92	256	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903753	114903753	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	90	382	0	ENST00000543371.1:c.757A>G	p.Ile253Val	p.I253V	ENST00000543371	NM_001198531.1	253	Atc/Gtc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181846	56181846	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	115	225	2	ENST00000399503.3:c.4072del	p.Ser1358ArgfsTer19	p.S1358Rfs*19	ENST00000399503	NM_005921.1	1357	cTt/ct																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753095	57753096	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0047847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	140	326	0	ENST00000274289.3:c.920_921delinsTT	p.Ala307Val	p.A307V	ENST00000274289	NM_006622.3	307	gCC/gTT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	273	307	4	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0047852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	530	615	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087895	27087898	+	frameshift_variant	Frame_Shift_Del	DEL	CCAC	CCAC	-			P-0047852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	831	445	2	ENST00000324856.7:c.2185_2188del	p.Pro729ValfsTer12	p.P729Vfs*12	ENST00000324856	NM_006015.4	728	CCACcc/cc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573556	48573557	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0047852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	116	197	0	ENST00000342988.3:c.140_141del	p.Leu47GlnfsTer6	p.L47Qfs*6	ENST00000342988	NM_005359.5	47	cTG/c																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974405	21974718	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCATCTAATACAAATATGTTCCCCCCTTCAGATCTTCTCAGCATTCGAGAGATCTGTACGCGCGTGGCTCCTCATTCCTCTTCCTTGGCTTCCCAAGCCCCCAGGGCGTCGCCAGGAGGAGGTCTGTGATTACAAACCCCTTCTGAAAACTCCCCAGGAAGCCTCCCCTTTTTCCGGAGAATCGAAGCGCTACCTGATTCCAATTCCCCTGCAAACTTCGTCCTCCAGAGTCGCCCGCCATCCCCTGCTCCCGCTGCAGACCCTCTACCCACCTGGATCGGCCTCCGACCGTAACTATTCGGTGCGTTGGGCAG	CCATCTAATACAAATATGTTCCCCCCTTCAGATCTTCTCAGCATTCGAGAGATCTGTACGCGCGTGGCTCCTCATTCCTCTTCCTTGGCTTCCCAAGCCCCCAGGGCGTCGCCAGGAGGAGGTCTGTGATTACAAACCCCTTCTGAAAACTCCCCAGGAAGCCTCCCCTTTTTCCGGAGAATCGAAGCGCTACCTGATTCCAATTCCCCTGCAAACTTCGTCCTCCAGAGTCGCCCGCCATCCCCTGCTCCCGCTGCAGACCCTCTACCCACCTGGATCGGCCTCCGACCGTAACTATTCGGTGCGTTGGGCAG	-			P-0047852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	95	139	1	ENST00000304494.5:c.109_150+272del		p.X37_splice	ENST00000304494	NM_000077.4	37																																																																																
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0047854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	367	589	0	ENST00000269305.4:c.376T>G	p.Tyr126Asp	p.Y126D	ENST00000269305	NM_001126112.2	126	Tac/Gac																																																																															
PARK2	5071	MSKCC	GRCh37	6	162394407	162394407	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	24	253	0	ENST00000366898.1:c.661G>T	p.Glu221Ter	p.E221*	ENST00000366898	NM_004562.2	221	Gaa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	-			P-0047854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	184	275	0	ENST00000275493.2:c.2237_2251del	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0047854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	516	504	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0047855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	194	554	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0047855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	62	349	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	111	306	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134977949	134977949	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56186270		P-0047855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	177	445	0	ENST00000398015.3:c.2942C>T	p.Thr981Met	p.T981M	ENST00000398015	NM_004441.4	981	aCg/aTg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056425	26056427	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-	rs774779034		P-0047855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	86	319	0	ENST00000343677.2:c.230_232del	p.Asn77del	p.N77del	ENST00000343677	NM_005319.3	77	aACAgc/agc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591145	67591154	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TACTTGATGT	TACTTGATGT	-			P-0047855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	30	235	0	ENST00000274335.5:c.1738_1745+2delTACTTGATGT		p.X580_splice	ENST00000274335		580																																																																																
APC	324	MSKCC	GRCh37	5	112170816	112170816	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	120	491	0	ENST00000257430.4:c.1912del	p.Ile638TyrfsTer8	p.I638Yfs*8	ENST00000257430	NM_000038.5	638	Ata/ta																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222282	2222282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	285	739	1	ENST00000326181.6:c.566G>A	p.Arg189Gln	p.R189Q	ENST00000326181	NM_032271.2	189	cGg/cAg																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233193	69233193	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	19	235	1	ENST00000462284.1:c.1058T>A	p.Leu353Gln	p.L353Q	ENST00000462284	NM_002392.5	353	cTg/cAg																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233201	69233201	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	24	227	0	ENST00000462284.1:c.1066T>A	p.Ser356Thr	p.S356T	ENST00000462284	NM_002392.5	356	Tca/Aca																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056432	26056432	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	94	320	0	ENST00000343677.2:c.225A>T	p.Lys75Asn	p.K75N	ENST00000343677	NM_005319.3	75	aaA/aaT																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720649	89720649	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0047858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	69	216	3	ENST00000371953.3:c.802-2A>T		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																																
AR	367	MSKCC	GRCh37	X	66766441	66766441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	25	212	1	ENST00000374690.3:c.1453C>T	p.Arg485Trp	p.R485W	ENST00000374690	NM_000044.3	485	Cgg/Tgg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120510	94120510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	59	221	0	ENST00000369303.4:c.541G>A	p.Gly181Arg	p.G181R	ENST00000369303	NM_004440.3	181	Gga/Aga																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858114	152858114	+	synonymous_variant	Silent	SNP	G	G	A			P-0047858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	119	568	1	ENST00000406277.2:c.501C>T	p.Thr167=	p.T167=	ENST00000406277	NM_152274.4	167	acC/acT																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46714229	46714230	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0047858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	48	363	0	ENST00000371975.4:c.49_50delinsAT	p.Gly17Ile	p.G17I	ENST00000371975	NM_003579.3	17	GGc/ATc																																																																															
CBL	867	MSKCC	GRCh37	11	119156139	119156139	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	43	421	0	ENST00000264033.4:c.1804G>T	p.Ala602Ser	p.A602S	ENST00000264033	NM_005188.3	602	Gcc/Tcc																																																																															
TET2	54790	MSKCC	GRCh37	4	106193742	106193742	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	22	158	0	ENST00000380013.4:c.4204G>T	p.Asp1402Tyr	p.D1402Y	ENST00000380013	NM_001127208.2	1402	Gac/Tac																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982963	201982963	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	228	819	0	ENST00000359651.3:c.812G>C	p.Arg271Thr	p.R271T	ENST00000359651		271	aGa/aCa																																																																															
WT1	7490	MSKCC	GRCh37	11	32456573	32456573	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	36	79	0	ENST00000332351.3:c.319G>T	p.Asp107Tyr	p.D107Y	ENST00000332351	NM_024426.4	107	Gac/Tac																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864552	57864552	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	201	970	0	ENST00000228682.2:c.2029G>C	p.Asp677His	p.D677H	ENST00000228682	NM_005269.2	677	Gat/Cat																																																																															
POLE	5426	MSKCC	GRCh37	12	133226071	133226071	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	98	917	0	ENST00000320574.5:c.3826A>C	p.Lys1276Gln	p.K1276Q	ENST00000320574	NM_006231.2	1276	Aag/Cag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435486	110435487	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	139	684	4	ENST00000375856.3:c.2914_2915delinsTT	p.Arg972Leu	p.R972L	ENST00000375856	NM_003749.2	972	CGg/TTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37872616	37872616	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	97	1086	0	ENST00000269571.5:c.1576A>G	p.Thr526Ala	p.T526A	ENST00000269571		526	Acc/Gcc																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732254	74732254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	29	334	0	ENST00000359995.5:c.655G>T	p.Val219Leu	p.V219L	ENST00000359995	NM_001195427.1	219	Gtg/Ttg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221232	1221233	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	275	823	1	ENST00000326873.7:c.756_757del	p.Tyr253ProfsTer12	p.Y253Pfs*12	ENST00000326873	NM_000455.4	252	cTG/c																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135010	11135010	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	214	708	0	ENST00000344626.4:c.2977G>T	p.Glu993Ter	p.E993*	ENST00000344626	NM_003072.3	993	Gag/Tag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470614	25470614	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	281	805	0	ENST00000264709.3:c.860G>T	p.Gly287Val	p.G287V	ENST00000264709	NM_175629.2	287	gGc/gTc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212495203	212495203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	57	365	0	ENST00000342788.4:c.2063G>C	p.Arg688Thr	p.R688T	ENST00000342788	NM_005235.2	688	aGa/aCa																																																																															
BCL6	604	MSKCC	GRCh37	3	187447486	187447486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	92	824	0	ENST00000232014.4:c.707G>T	p.Arg236Met	p.R236M	ENST00000232014	NM_001130845.1	236	aGg/aTg																																																																															
KIT	3815	MSKCC	GRCh37	4	55593616	55593616	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	49	339	0	ENST00000288135.5:c.1682A>G	p.Glu561Gly	p.E561G	ENST00000288135	NM_000222.2	561	gAg/gGg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557964	187557964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	158	388	0	ENST00000441802.2:c.3747C>G	p.Phe1249Leu	p.F1249L	ENST00000441802	NM_005245.3	1249	ttC/ttG																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004246	150004246	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	48	218	0	ENST00000253339.5:c.1979G>T	p.Arg660Leu	p.R660L	ENST00000253339		660	cGt/cTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873510	151873510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	140	503	0	ENST00000262189.6:c.9028G>T	p.Ala3010Ser	p.A3010S	ENST00000262189	NM_170606.2	3010	Gca/Tca																																																																															
ABL1	25	MSKCC	GRCh37	9	133753838	133753838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	137	677	0	ENST00000318560.5:c.1307G>A	p.Gly436Asp	p.G436D	ENST00000318560	NM_005157.4	436	gGc/gAc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841247	15841247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	16	264	0	ENST00000307771.7:c.1331G>A	p.Arg444Gln	p.R444Q	ENST00000307771	NM_005089.3	444	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0048219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	167	631	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11100015	11100015	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	96	681	0	ENST00000344626.4:c.1141C>T	p.Arg381Ter	p.R381*	ENST00000344626	NM_003072.3	381	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984490	72984490	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	97	889	0	ENST00000268489.5:c.3094G>T	p.Val1032Leu	p.V1032L	ENST00000268489	NM_006885.3	1032	Gtg/Ttg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	81	601	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	24	405	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970971	21970971	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	67	1068	2	ENST00000304494.5:c.387C>A	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taC/taA																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141526	11141526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	45	864	1	ENST00000344626.4:c.3503C>T	p.Ala1168Val	p.A1168V	ENST00000344626	NM_003072.3	1168	gCa/gTa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061233	38061233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	224	979	0	ENST00000250448.2:c.756C>A	p.Asn252Lys	p.N252K	ENST00000250448	NM_004496.3	252	aaC/aaA																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657663	37657666	+	frameshift_variant	Frame_Shift_Del	DEL	TAAG	TAAG	-			P-0047762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	49	384	0	ENST00000447079.4:c.2581_2584del	p.Lys861ValfsTer6	p.K861Vfs*6	ENST00000447079	NM_015083.1	860	atTAAG/at																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981527	70981527	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1317	302	1141	1	ENST00000276594.2:c.569A>G	p.Lys190Arg	p.K190R	ENST00000276594	NM_024504.3	190	aAg/aGg																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032068	26032068	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	11	460	0	ENST00000244661.2:c.221A>G	p.Glu74Gly	p.E74G	ENST00000244661	NM_003537.3	74	gAa/gGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0047764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	216	856	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193107258	193107258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	53	253	0	ENST00000367435.3:c.467G>A	p.Arg156His	p.R156H	ENST00000367435	NM_024529.4	156	cGt/cAt																																																																															
SRC	6714	MSKCC	GRCh37	20	36031585	36031585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1230	157	905	1	ENST00000358208.4:c.1414C>T	p.Arg472Cys	p.R472C	ENST00000358208		472	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212248	5212248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	329	831	2	ENST00000357368.4:c.4783C>T	p.Arg1595Cys	p.R1595C	ENST00000357368	NM_002850.3	1595	Cgc/Tgc																																																																															
STK40	83931	MSKCC	GRCh37	1	36820004	36820004	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	239	590	0	ENST00000373129.3:c.584A>G	p.His195Arg	p.H195R	ENST00000373129	NM_032017.1	195	cAc/cGc																																																																															
NF1	4763	MSKCC	GRCh37	17	29552197	29552197	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	89	389	0	ENST00000358273.4:c.1930T>C	p.Ser644Pro	p.S644P	ENST00000358273	NM_001042492.2	644	Tcc/Ccc																																																																															
ATRX	546	MSKCC	GRCh37	X	76940042	76940042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	113	274	0	ENST00000373344.5:c.706C>T	p.His236Tyr	p.H236Y	ENST00000373344	NM_000489.3	236	Cat/Tat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913288		P-0047770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	41	337	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0047770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	74	374	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	32	275	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120199	70120199	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	154	653	0	ENST00000245479.2:c.1201C>T	p.Gln401Ter	p.Q401*	ENST00000245479	NM_000346.3	401	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653867	89653867	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0047770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	33	291	0	ENST00000371953.3:c.164+1G>T		p.X55_splice	ENST00000371953	NM_000314.4	55																																																																																
APC	324	MSKCC	GRCh37	5	112151191	112151191	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0047770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	41	299	0	ENST00000257430.4:c.835-1G>A		p.X279_splice	ENST00000257430	NM_000038.5	279																																																																																
ESR1	2099	MSKCC	GRCh37	6	152129101	152129104	+	missense_variant	Missense_Mutation	ONP	CCAA	CCAA	ATAT			P-0047770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	46	975	2	ENST00000206249.3:c.54_57delinsATAT	p.Gln19Tyr	p.Q19Y	ENST00000206249	NM_000125.3	18	atCCAA/atATAT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	95	342	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0047772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	169	604	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0047788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	1538	587	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0047788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	1467	604	1	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858414	9858414	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	87	430	0	ENST00000330684.3:c.2987T>C	p.Val996Ala	p.V996A	ENST00000330684	NM_001134407.1	996	gTg/gCg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53240998	53240998	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	149	283	0	ENST00000375401.3:c.1213A>G	p.Lys405Glu	p.K405E	ENST00000375401	NM_004187.3	405	Aaa/Gaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	62	364	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0047792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	83	389	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922973	44922973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	134	259	0	ENST00000377967.4:c.1834C>T	p.Arg612Ter	p.R612*	ENST00000377967	NM_021140.2	612	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748583	40748583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	65	378	1	ENST00000373198.4:c.2933C>T	p.Ala978Val	p.A978V	ENST00000373198	NM_133170.3	978	gCg/gTg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88635839	88635843	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CAAGG	CAAGG	-			P-0047792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	58	427	0	ENST00000372037.3:c.64_67+1del		p.X22_splice	ENST00000372037	NM_004329.2	22																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32166772	32166780	+	inframe_deletion	In_Frame_Del	DEL	CGAGTGAAA	CGAGTGAAA	-			P-0047792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	201	943	0	ENST00000375023.3:c.4458_4466del	p.Phe1487_Arg1489del	p.F1487_R1489del	ENST00000375023	NM_004557.3	1486	ggTTTCACTCGa/gga																																																																															
ID3	3399	MSKCC	GRCh37	1	23885815	23885815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	68	484	0	ENST00000374561.5:c.103G>A	p.Glu35Lys	p.E35K	ENST00000374561	NM_002167.4	35	Gag/Aag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	63	418	2	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0047809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	52	410	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	115	322	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507429	8507429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	62	213	0	ENST00000356435.5:c.1549G>A	p.Gly517Arg	p.G517R	ENST00000356435		517	Ggg/Agg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023064	27023064	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	31	79	0	ENST00000324856.7:c.172del	p.Ser58AlafsTer43	p.S58Afs*43	ENST00000324856	NM_006015.4	57	gAa/ga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117785	70117785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	140	775	1	ENST00000245479.2:c.253G>A	p.Asp85Asn	p.D85N	ENST00000245479	NM_000346.3	85	Gac/Aac																																																																															
JAK3	3718	MSKCC	GRCh37	19	17948788	17948788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	90	678	0	ENST00000458235.1:c.1654G>A	p.Glu552Lys	p.E552K	ENST00000458235	NM_000215.3	552	Gag/Aag																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42851118	42851118	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	26	235	0	ENST00000398585.3:c.775T>G	p.Tyr259Asp	p.Y259D	ENST00000398585	NM_001135099.1	259	Tat/Gat																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707603	176707603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	107	418	0	ENST00000439151.2:c.5660C>T	p.Ala1887Val	p.A1887V	ENST00000439151	NM_022455.4	1887	gCa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	189	304	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29663491	29663491	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0047813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	50	271	1	ENST00000358273.4:c.6147G>T	p.Lys2049Asn	p.K2049N	ENST00000358273	NM_001042492.2	2049	aaG/aaT																																																																															
MPL	4352	MSKCC	GRCh37	1	43805034	43805037	+	frameshift_variant	Frame_Shift_Del	DEL	AGTG	AGTG	-			P-0047813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	94	673	0	ENST00000372470.3:c.485_488del	p.Ser162IlefsTer3	p.S162Ifs*3	ENST00000372470	NM_005373.2	162	AGTGat/at																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258708	115258709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	55	301	0	ENST00000369535.4:c.73dup	p.Gln25ProfsTer7	p.Q25Pfs*7	ENST00000369535	NM_002524.4	25	cag/cCag																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38944635	38944635	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	43	223	0	ENST00000357387.3:c.4826G>C	p.Arg1609Pro	p.R1609P	ENST00000357387	NM_152756.3	1609	cGt/cCt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984127	2984127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	146	509	0	ENST00000396946.4:c.403G>A	p.Val135Ile	p.V135I	ENST00000396946	NM_032415.4	135	Gtc/Atc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59937204	59937204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	44	352	0	ENST00000259008.2:c.158G>T	p.Ser53Ile	p.S53I	ENST00000259008	NM_032043.2	53	aGc/aTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0047823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	103	416	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952048	178952048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	90	302	0	ENST00000263967.3:c.3103G>A	p.Ala1035Thr	p.A1035T	ENST00000263967	NM_006218.2	1035	Gct/Act																																																																															
ETV6	2120	MSKCC	GRCh37	12	12006424	12006424	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	151	499	0	ENST00000396373.4:c.392del	p.Ser131TyrfsTer78	p.S131Yfs*78	ENST00000396373	NM_001987.4	131	tCa/ta																																																																															
BLM	641	MSKCC	GRCh37	15	91346831	91346831	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	98	350	0	ENST00000355112.3:c.3443del	p.Lys1148SerfsTer2	p.K1148Sfs*2	ENST00000355112	NM_000057.2	1147	Aaa/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0047845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	32	360	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0047845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	51	598	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0047845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	48	616	1	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	42	330	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604656	48604656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	17	266	0	ENST00000342988.3:c.1478A>G	p.Asp493Gly	p.D493G	ENST00000342988	NM_005359.5	493	gAt/gGt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119808	70119808	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	51	519	0	ENST00000245479.2:c.811del	p.Arg271AlafsTer8	p.R271Afs*8	ENST00000245479	NM_000346.3	270	ttC/tt																																																																															
STK11	6794	MSKCC	GRCh37	19	1218365	1218440	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CATCATCCTGACGTTGGGTCGGCTGATACACCCCTGTCCTCTCTGTCCCAGGGAAATTCAACTACTGAGGAGGTTA	CATCATCCTGACGTTGGGTCGGCTGATACACCCCTGTCCTCTCTGTCCCAGGGAAATTCAACTACTGAGGAGGTTA	-			P-0047846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	27	190	0	ENST00000326873.7:c.291-50_316del		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	48	325	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023782	27023783	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	24	332	0	ENST00000324856.7:c.888_889insG	p.Gln297AlafsTer103	p.Q297Afs*103	ENST00000324856	NM_006015.4	296	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7578453	7578460	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGCGGA	GGCGCGGA	-			P-0047848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	46	727	0	ENST00000269305.4:c.470_477del	p.Val157AspfsTer21	p.V157Dfs*21	ENST00000269305	NM_001126112.2	157	gTCCGCGCC/g																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	71	604	1	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	54	565	0	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	34	286	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	31	331	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
ALK	238	MSKCC	GRCh37	2	29606696	29606696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	43	468	0	ENST00000389048.3:c.1184G>A	p.Arg395His	p.R395H	ENST00000389048	NM_004304.4	395	cGt/cAt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176675268	176675269	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	32	236	0	ENST00000439151.2:c.4591dupA	p.Met1531AsnfsTer4	p.M1531Nfs*4	ENST00000439151	NM_022455.4	1528	-/A																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993708	72993708	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62640010		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	48	535	0	ENST00000268489.5:c.337G>A	p.Ala113Thr	p.A113T	ENST00000268489	NM_006885.3	113	Gcc/Acc																																																																															
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	53	303	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56494996	56494996	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201958747		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	68	496	0	ENST00000267101.3:c.3353G>A	p.Arg1118Gln	p.R1118Q	ENST00000267101	NM_001982.3	1118	cGg/cAg																																																																															
RAB35	11021	MSKCC	GRCh37	12	120535068	120535068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	47	376	2	ENST00000229340.5:c.587G>A	p.Arg196Gln	p.R196Q	ENST00000229340	NM_006861.6	196	cGa/cAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	71	322	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
B2M	567	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	28	185	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11141492	11141492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	78	613	1	ENST00000344626.4:c.3469C>T	p.Arg1157Trp	p.R1157W	ENST00000344626	NM_003072.3	1157	Cgg/Tgg																																																																															
CIC	23152	MSKCC	GRCh37	19	42796882	42796883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	101	812	1	ENST00000575354.2:c.3347dupC	p.Ser1117LysfsTer34	p.S1117Kfs*34	ENST00000575354	NM_015125.3	1114	gcc/gCcc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	47	361	2	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710595	114710597	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs754968616		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	54	321	0	ENST00000543371.1:c.85_87del	p.Glu29del	p.E29del	ENST00000543371	NM_001198531.1	27	cAGGag/cag																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158647	26158647	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	18	106	0	ENST00000289316.2:c.250T>C	p.Tyr84His	p.Y84H	ENST00000289316	NM_138720.2	84	Tac/Cac																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020769	37020769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	55	458	0	ENST00000358127.4:c.76del	p.Val26PhefsTer3	p.V26Ffs*3	ENST00000358127	NM_001280556.1	26	Gtt/tt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55233024	55233024	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144943614		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	51	386	0	ENST00000275493.2:c.1774G>A	p.Val592Ile	p.V592I	ENST00000275493	NM_005228.3	592	Gtc/Atc																																																																															
RAD51	5888	MSKCC	GRCh37	15	41021807	41021807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	64	405	1	ENST00000267868.3:c.749G>A	p.Arg250Gln	p.R250Q	ENST00000267868	NM_002875.4	250	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112164664	112164664	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	21	149	0	ENST00000257430.4:c.1742delA	p.Lys581ArgfsTer9	p.K581Rfs*9	ENST00000257430	NM_000038.5	580	Aaa/aa																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	77	373	3	ENST00000262741.5:c.883delA	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508470	106508470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	28	284	0	ENST00000359195.3:c.464C>T	p.Thr155Met	p.T155M	ENST00000359195	NM_002649.2	155	aCg/aTg																																																																															
ATM	472	MSKCC	GRCh37	11	108137897	108137897	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	22	210	0	ENST00000278616.4:c.2467-1G>T		p.X823_splice	ENST00000278616	NM_000051.3	823																																																																																
EP300	2033	MSKCC	GRCh37	22	41513539	41513539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	62	505	0	ENST00000263253.7:c.443C>T	p.Thr148Met	p.T148M	ENST00000263253	NM_001429.3	148	aCg/aTg																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110188	3110188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	78	590	0	ENST00000078429.4:c.178C>T	p.Arg60Cys	p.R60C	ENST00000078429	NM_002067.2	60	Cgc/Tgc																																																																															
PARP1	142	MSKCC	GRCh37	1	226567685	226567685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	54	480	1	ENST00000366794.5:c.1481C>T	p.Ala494Val	p.A494V	ENST00000366794	NM_001618.3	494	gCc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	75	687	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025856	48025857	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	17	211	0	ENST00000234420.5:c.741dupA	p.Arg248ThrfsTer8	p.R248Tfs*8	ENST00000234420	NM_000179.2	245	ata/atAa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960039	134960039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	62	469	1	ENST00000398015.3:c.2396G>A	p.Arg799His	p.R799H	ENST00000398015	NM_004441.4	799	cGc/cAc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864125	57864125	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	64	603	1	ENST00000228682.2:c.1607del	p.Pro536GlnfsTer77	p.P536Qfs*77	ENST00000228682	NM_005269.2	534	ggC/gg																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983016	149983016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	47	410	1	ENST00000253339.5:c.3242G>A	p.Arg1081Gln	p.R1081Q	ENST00000253339		1081	cGa/cAa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905944	50905944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	115	849	2	ENST00000440232.2:c.916C>T	p.Arg306Cys	p.R306C	ENST00000440232	NM_002691.3	306	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891205	151891205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	45	345	0	ENST00000262189.6:c.4549G>A	p.Gly1517Arg	p.G1517R	ENST00000262189	NM_170606.2	1517	Gga/Aga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89383342	89383342	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	66	509	3	ENST00000301030.4:c.86del	p.Lys29ArgfsTer8	p.K29Rfs*8	ENST00000301030	NM_001256183.1	29	aAg/ag																																																																															
MSI2	124540	MSKCC	GRCh37	17	55693419	55693419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	64	581	0	ENST00000284073.2:c.626C>T	p.Ala209Val	p.A209V	ENST00000284073	NM_138962.2	209	gCg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224532	36224532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759167832		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	99	731	2	ENST00000222270.7:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000222270	NM_014727.1	2332	Cgt/Tgt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912134	50912134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	98	652	2	ENST00000440232.2:c.1868G>A	p.Arg623Gln	p.R623Q	ENST00000440232	NM_002691.3	623	cGg/cAg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65303634	65303634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	53	414	0	ENST00000342505.4:c.3121C>T	p.Arg1041Trp	p.R1041W	ENST00000342505	NM_002227.2	1041	Cgg/Tgg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134473	2134473	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1343536158		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	89	805	1	ENST00000219476.3:c.4250G>A	p.Arg1417Gln	p.R1417Q	ENST00000219476	NM_000548.3	1417	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229048	36229048	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866415691		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	78	643	0	ENST00000222270.7:c.7828C>T	p.Arg2610Cys	p.R2610C	ENST00000222270	NM_014727.1	2610	Cgc/Tgc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62305359	62305359	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200429535		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	71	645	1	ENST00000508582.2:c.904G>A	p.Val302Ile	p.V302I	ENST00000508582		302	Gtc/Atc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285675	46285675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	44	314	0	ENST00000334344.6:c.5035C>T	p.Arg1679Trp	p.R1679W	ENST00000334344	NM_152641.2	1679	Cgg/Tgg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56401613	56401613	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	44	300	0	ENST00000348428.3:c.1475C>T	p.Thr492Met	p.T492M	ENST00000348428	NM_006785.3	492	aCg/aTg																																																																															
IGF2	3481	MSKCC	GRCh37	11	2156695	2156695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142012621		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	85	630	1	ENST00000434045.2:c.227C>T	p.Ser76Leu	p.S76L	ENST00000434045	NM_001127598.1	76	tCg/tTg																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50484366	50484366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	43	305	0	ENST00000394963.4:c.1126G>A	p.Val376Ile	p.V376I	ENST00000394963	NM_003076.4	376	Gtc/Atc																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50492533	50492533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	79	561	1	ENST00000394963.4:c.1429C>T	p.Arg477Cys	p.R477C	ENST00000394963	NM_003076.4	477	Cgc/Tgc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56474152	56474152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	89	587	0	ENST00000267101.3:c.68G>A	p.Gly23Asp	p.G23D	ENST00000267101	NM_001982.3	23	gGc/gAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877396	28877396	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	62	431	0	ENST00000282397.4:c.3925T>C	p.Tyr1309His	p.Y1309H	ENST00000282397	NM_002019.4	1309	Tac/Cac																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680674	88680674	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	65	589	0	ENST00000360948.2:c.583T>G	p.Ser195Ala	p.S195A	ENST00000360948	NM_001012338.2	195	Tcc/Gcc																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2097715	2097715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	78	611	2	ENST00000219066.1:c.134C>T	p.Ala45Val	p.A45V	ENST00000219066	NM_002528.5	45	gCa/gTa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348110	89348110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	81	671	2	ENST00000301030.4:c.4840C>T	p.Arg1614Trp	p.R1614W	ENST00000301030	NM_001256183.1	1614	Cgg/Tgg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40369469	40369469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	63	442	0	ENST00000293328.3:c.1183G>A	p.Glu395Lys	p.E395K	ENST00000293328	NM_012448.3	395	Gag/Aag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250371	10250371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	66	417	0	ENST00000340748.4:c.3881G>A	p.Cys1294Tyr	p.C1294Y	ENST00000340748		1294	tGc/tAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11169524	11169524	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	85	578	0	ENST00000344626.4:c.4594C>A	p.Leu1532Met	p.L1532M	ENST00000344626	NM_003072.3	1532	Ctg/Atg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376433	15376433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	105	638	0	ENST00000263377.2:c.581C>T	p.Ser194Phe	p.S194F	ENST00000263377	NM_058243.2	194	tCc/tTc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256732	19256732	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	79	570	4	ENST00000162023.5:c.981del	p.Gly329AlafsTer?	p.G329Afs*?	ENST00000162023		327	ccC/cc																																																																															
AXL	558	MSKCC	GRCh37	19	41758299	41758299	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	51	569	0	ENST00000301178.4:c.1755A>C	p.Glu585Asp	p.E585D	ENST00000301178	NM_021913.4	585	gaA/gaC																																																																															
CIC	23152	MSKCC	GRCh37	19	42795812	42795812	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141269383		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	66	651	1	ENST00000575354.2:c.2801G>A	p.Arg934Gln	p.R934Q	ENST00000575354	NM_015125.3	934	cGg/cAg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128030524	128030524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	33	319	0	ENST00000285398.2:c.1744G>A	p.Gly582Arg	p.G582R	ENST00000285398	NM_000122.1	582	Gga/Aga																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375199	31375199	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	95	580	0	ENST00000328111.2:c.596G>C	p.Gly199Ala	p.G199A	ENST00000328111	NM_006892.3	199	gGc/gCc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936678	49936678	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	56	559	0	ENST00000296474.3:c.1249A>G	p.Ser417Gly	p.S417G	ENST00000296474	NM_002447.2	417	Agc/Ggc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332643	153332643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	29	339	0	ENST00000281708.4:c.313G>A	p.Ala105Thr	p.A105T	ENST00000281708	NM_033632.3	105	Gct/Act																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509768	106509768	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146487441		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	53	451	0	ENST00000359195.3:c.1762G>A	p.Ala588Thr	p.A588T	ENST00000359195	NM_002649.2	588	Gca/Aca																																																																															
MED12	9968	MSKCC	GRCh37	X	70341511	70341511	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	51	555	1	ENST00000374080.3:c.946T>A	p.Ser316Thr	p.S316T	ENST00000374080		316	Tca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	33	352	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577060	7577060	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TCTTT			P-0047851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	47	597	0	ENST00000269305.4:c.878delinsAAAGA	p.Gly293GlufsTer14	p.G293Efs*14	ENST00000269305	NM_001126112.2	293	gGg/gAAAGAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	13	264	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169917	32169917	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	45	475	0	ENST00000375023.3:c.3691C>A	p.Pro1231Thr	p.P1231T	ENST00000375023	NM_004557.3	1231	Cca/Aca																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133781	55133781	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	12	256	0	ENST00000257290.5:c.994G>T	p.Val332Phe	p.V332F	ENST00000257290	NM_006206.4	332	Gtc/Ttc																																																																															
WT1	7490	MSKCC	GRCh37	11	32410657	32410657	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	26	374	0	ENST00000332351.3:c.1501C>G	p.Arg501Gly	p.R501G	ENST00000332351	NM_024426.4	501	Cgc/Ggc																																																																															
PGR	5241	MSKCC	GRCh37	11	100933282	100933282	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	22	344	0	ENST00000325455.5:c.2108A>T	p.His703Leu	p.H703L	ENST00000325455	NM_001202474.3	703	cAt/cTt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375999	118375999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	21	308	0	ENST00000534358.1:c.9392G>A	p.Gly3131Asp	p.G3131D	ENST00000534358	NM_005933.3	3131	gGt/gAt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436596	110436596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	53	564	2	ENST00000375856.3:c.1805G>A	p.Arg602Gln	p.R602Q	ENST00000375856	NM_003749.2	602	cGg/cAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11094979	11094979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	45	542	0	ENST00000344626.4:c.152C>T	p.Ser51Leu	p.S51L	ENST00000344626	NM_003072.3	51	tCa/tTa																																																																															
KDR	3791	MSKCC	GRCh37	4	55946256	55946256	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	42	292	0	ENST00000263923.4:c.3923G>T	p.Gly1308Val	p.G1308V	ENST00000263923	NM_002253.2	1308	gGa/gTa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31322947	31322947	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	113	436	0	ENST00000412585.2:c.949G>C	p.Val317Leu	p.V317L	ENST00000412585	NM_005514.6	317	Gtc/Ctc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0047861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	74	255	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7578192	7578192	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	197	447	0	ENST00000269305.4:c.657delC	p.Tyr220MetfsTer27	p.Y220Mfs*27	ENST00000269305	NM_001126112.2	219	ccC/cc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118372503	118372503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	64	366	0	ENST00000534358.1:c.6436C>T	p.Pro2146Ser	p.P2146S	ENST00000534358	NM_005933.3	2146	Ccc/Tcc																																																																															
MDM4	4194	MSKCC	GRCh37	1	204499918	204499918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	20	310	1	ENST00000367182.3:c.260G>A	p.Arg87His	p.R87H	ENST00000367182	NM_001278516.1	87	cGt/cAt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31376694	31376694	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	55	324	0	ENST00000328111.2:c.689G>A	p.Trp230Ter	p.W230*	ENST00000328111	NM_006892.3	230	tGg/tAg																																																																															
TERT	7015	MSKCC	GRCh37	5	1293590	1293590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1349	151	654	2	ENST00000310581.5:c.1411C>T	p.Arg471Trp	p.R471W	ENST00000310581	NM_198253.2	471	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112174516	112174516	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0047861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	36	248	0	ENST00000257430.4:c.3225T>G	p.Tyr1075Ter	p.Y1075*	ENST00000257430	NM_000038.5	1075	taT/taG																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	99	229	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	308	461	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434070	121434070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	119	386	2	ENST00000257555.6:c.961C>T	p.Arg321Cys	p.R321C	ENST00000257555		321	Cgc/Tgc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485241	8485241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	77	215	0	ENST00000356435.5:c.3139G>A	p.Ala1047Thr	p.A1047T	ENST00000356435		1047	Gcc/Acc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	150	428	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	221	578	5	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741849	17741849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	59	138	0	ENST00000250003.3:c.520G>A	p.Ala174Thr	p.A174T	ENST00000250003	NM_002478.4	174	Gcc/Acc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148514998	148515000	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	105	233	2	ENST00000320356.2:c.1209_1211del	p.Glu404del	p.E404del	ENST00000320356	NM_004456.4	403	gaAGAg/gag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	27	222	2	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212568865	212568866	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	71	275	0	ENST00000342788.4:c.1252dup	p.Ser418PhefsTer2	p.S418Ffs*2	ENST00000342788	NM_005235.2	418	tct/tTct																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	12	48	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	92	226	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729394	41729394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	117	386	0	ENST00000242208.4:c.1135C>T	p.Arg379Trp	p.R379W	ENST00000242208	NM_002192.2	379	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096967	11096967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	162	589	1	ENST00000344626.4:c.458C>T	p.Pro153Leu	p.P153L	ENST00000344626	NM_003072.3	153	cCg/cTg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31389095	31389095	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756558325		P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	73	291	0	ENST00000328111.2:c.2008C>T	p.Arg670Trp	p.R670W	ENST00000328111	NM_006892.3	670	Cgg/Tgg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719525	61719525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	85	250	0	ENST00000401558.2:c.1658G>A	p.Arg553His	p.R553H	ENST00000401558	NM_003400.3	553	cGt/cAt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467083	25467083	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	146	473	0	ENST00000264709.3:c.1792C>T	p.Arg598Ter	p.R598*	ENST00000264709	NM_175629.2	598	Cga/Tga																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	136	280	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
TEK	7010	MSKCC	GRCh37	9	27192562	27192562	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138894008		P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	138	308	0	ENST00000380036.4:c.1565G>A	p.Arg522His	p.R522H	ENST00000380036	NM_000459.3	522	cGt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214866	36214866	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	176	506	3	ENST00000222270.7:c.3296del	p.Gly1099AlafsTer83	p.G1099Afs*83	ENST00000222270	NM_014727.1	1098	Ggg/gg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944267	81944267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	183	529	0	ENST00000359376.3:c.1876G>A	p.Glu626Lys	p.E626K	ENST00000359376	NM_002661.3	626	Gag/Aag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216184	36216184	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	130	475	1	ENST00000222270.7:c.3596del	p.Gly1199AlafsTer156	p.G1199Afs*156	ENST00000222270	NM_014727.1	1198	Ggg/gg																																																																															
BARD1	580	MSKCC	GRCh37	2	215632303	215632303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	113	311	0	ENST00000260947.4:c.1471G>T	p.Gly491Trp	p.G491W	ENST00000260947	NM_000465.2	491	Ggg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211861	36211861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	144	536	1	ENST00000222270.7:c.1612C>T	p.Arg538Cys	p.R538C	ENST00000222270	NM_014727.1	538	Cgt/Tgt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986838	36986838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	98	165	0	ENST00000354822.5:c.851C>T	p.Ser284Leu	p.S284L	ENST00000354822	NM_001079668.2	284	tCg/tTg																																																																															
ATM	472	MSKCC	GRCh37	11	108186821	108186821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	96	258	1	ENST00000278616.4:c.6179G>A	p.Arg2060His	p.R2060H	ENST00000278616	NM_000051.3	2060	cGc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778371	3778371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	51	529	1	ENST00000262367.5:c.6677C>T	p.Ala2226Val	p.A2226V	ENST00000262367	NM_004380.2	2226	gCg/gTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528243	157528243	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	129	333	0	ENST00000346085.5:c.5968C>T	p.Arg1990Ter	p.R1990*	ENST00000346085	NM_020732.3	1990	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031954	10031954	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199528312		P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	108	427	0	ENST00000330684.3:c.869C>T	p.Ala290Val	p.A290V	ENST00000330684	NM_001134407.1	290	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438210	49438211	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	44	372	1	ENST00000301067.7:c.5058dup	p.Arg1687ThrfsTer4	p.R1687Tfs*4	ENST00000301067	NM_003482.3	1686	-/A																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38274832	38274832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	82	254	0	ENST00000425967.3:c.1748C>T	p.Thr583Met	p.T583M	ENST00000425967	NM_001174067.1	583	aCg/aTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865040	57865040	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	141	467	0	ENST00000228682.2:c.2520del	p.Pro842HisfsTer104	p.P842Hfs*104	ENST00000228682	NM_005269.2	839	gaG/ga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462969	120462969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	120	280	0	ENST00000256646.2:c.5362C>T	p.Pro1788Ser	p.P1788S	ENST00000256646	NM_024408.3	1788	Cca/Tca																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206649616	206649616	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	144	405	0	ENST00000367120.3:c.451A>G	p.Ser151Gly	p.S151G	ENST00000367120	NM_014002.3	151	Agc/Ggc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18691185	18691185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	26	280	0	ENST00000266497.5:c.3296G>A	p.Cys1099Tyr	p.C1099Y	ENST00000266497		1099	tGc/tAc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112915661	112915661	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	36	264	0	ENST00000351677.2:c.934C>T	p.Pro312Ser	p.P312S	ENST00000351677	NM_002834.3	312	Cct/Tct																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929217	32929217	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	98	268	0	ENST00000380152.3:c.7230del	p.Phe2410LeufsTer57	p.F2410Lfs*57	ENST00000380152		2409	ccT/cc																																																																															
B2M	567	MSKCC	GRCh37	15	45003788	45003788	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	215	385	0	ENST00000558401.1:c.46del	p.Ser16LeufsTer28	p.S16Lfs*28	ENST00000558401	NM_004048.2	15	cTt/ct																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993780	72993780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	108	412	0	ENST00000268489.5:c.265G>A	p.Ala89Thr	p.A89T	ENST00000268489	NM_006885.3	89	Gcc/Acc																																																																															
MSI2	124540	MSKCC	GRCh37	17	55752422	55752422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	223	604	1	ENST00000284073.2:c.880G>A	p.Gly294Arg	p.G294R	ENST00000284073	NM_138962.2	294	Gga/Aga																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39620659	39620659	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	70	220	0	ENST00000262039.4:c.2057A>G	p.Gln686Arg	p.Q686R	ENST00000262039	NM_002647.2	686	cAg/cGg																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62326503	62326503	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	205	569	0	ENST00000508582.2:c.3500T>C	p.Met1167Thr	p.M1167T	ENST00000508582		1167	aTg/aCg																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22221649	22221649	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	25	206	0	ENST00000215832.6:c.82C>A	p.Leu28Ile	p.L28I	ENST00000215832	NM_002745.4	28	Ctc/Atc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30648382	30648383	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	107	342	0	ENST00000359013.4:c.12dup	p.Leu5AlafsTer37	p.L5Afs*37	ENST00000359013	NM_001024847.2	3	cgg/cGgg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205106	128205106	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	186	651	0	ENST00000341105.2:c.335A>G	p.His112Arg	p.H112R	ENST00000341105	NM_032638.4	112	cAc/cGc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185184690	185184690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	77	264	0	ENST00000265026.3:c.1582G>A	p.Ala528Thr	p.A528T	ENST00000265026	NM_004721.4	528	Gcc/Acc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806102	1806102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	177	507	0	ENST00000260795.2:c.1121C>T	p.Ala374Val	p.A374V	ENST00000260795		374	gCa/gTa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902409	1902410	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	131	375	0	ENST00000382891.5:c.31dup	p.Ser11PhefsTer46	p.S11Ffs*46	ENST00000382891	NM_133335.3	10	ctt/cTtt																																																																															
TET2	54790	MSKCC	GRCh37	4	106158443	106158443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	71	133	0	ENST00000380013.4:c.3344C>T	p.Pro1115Leu	p.P1115L	ENST00000380013	NM_001127208.2	1115	cCt/cTt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117724407	117724407	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	136	377	0	ENST00000368508.3:c.472C>A	p.Leu158Met	p.L158M	ENST00000368508	NM_002944.2	158	Ctg/Atg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117862860	117862860	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	51	198	0	ENST00000297338.2:c.1617A>C	p.Glu539Asp	p.E539D	ENST00000297338	NM_006265.2	539	gaA/gaC																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044860	47044860	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	165	583	0	ENST00000329236.7:c.1952T>C	p.Val651Ala	p.V651A	ENST00000329236	NM_001204466.1	651	gTg/gCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0047864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	191	294	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793663		P-0047864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	14	356	1	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5066739	5066739	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	33	198	0	ENST00000381652.3:c.1276C>T	p.Arg426Ter	p.R426*	ENST00000381652	NM_004972.3	426	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0047864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	180	434	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
MSH3	4437	MSKCC	GRCh37	5	80160645	80160645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	76	308	0	ENST00000265081.6:c.3014C>T	p.Thr1005Ile	p.T1005I	ENST00000265081	NM_002439.4	1005	aCc/aTc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465282	120465282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	45	290	0	ENST00000256646.2:c.4979C>T	p.Ser1660Leu	p.S1660L	ENST00000256646	NM_024408.3	1660	tCa/tTa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465274	120465274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	37	250	0	ENST00000256646.2:c.4987C>T	p.Leu1663Phe	p.L1663F	ENST00000256646	NM_024408.3	1663	Ctt/Ttt																																																																															
RB1	5925	MSKCC	GRCh37	13	48942714	48942715	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0047864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	21	157	0	ENST00000267163.4:c.1102_1103del	p.Val368AsnfsTer8	p.V368Nfs*8	ENST00000267163	NM_000321.2	367	aaTGta/aata																																																																															
CBFB	865	MSKCC	GRCh37	16	67116174	67116398	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGAAGATAGAGACAGGTCTCATCGGGAGGAAATGGAGGTGAGAGTTTCACAGCTGCTGGCAGTAACTGGTTAGTACTTTCCCCCAAACTCTCAGGCTGTGTTTGTGATGTTTGTGCATAATGCTTTTTAATAGTTTAATTTTGTCTTTCATTTTTAAAAAGTTGTACTCTCTGGCTTTGTGTTTATTAAATGTAATTGCTATAAAGAAATTTATTTTAATTTTA	TTGAAGATAGAGACAGGTCTCATCGGGAGGAAATGGAGGTGAGAGTTTCACAGCTGCTGGCAGTAACTGGTTAGTACTTTCCCCCAAACTCTCAGGCTGTGTTTGTGATGTTTGTGCATAATGCTTTTTAATAGTTTAATTTTGTCTTTCATTTTTAAAAAGTTGTACTCTCTGGCTTTGTGTTTATTAAATGTAATTGCTATAAAGAAATTTATTTTAATTTTA	-			P-0047864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	61	327	0	ENST00000412916.2:c.458_495+187del		p.X153_splice	ENST00000412916		153																																																																																
TET2	54790	MSKCC	GRCh37	4	106156919	106156919	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	15	255	0	ENST00000380013.4:c.1820G>C	p.Gly607Ala	p.G607A	ENST00000380013	NM_001127208.2	607	gGa/gCa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588984	67588984	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	11	158	0	ENST00000274335.5:c.1075G>C	p.Asp359His	p.D359H	ENST00000274335		359	Gat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	104	335	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0040159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	238	664	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	242	523	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575152	48575152	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	79	268	0	ENST00000342988.3:c.346C>T	p.Gln116Ter	p.Q116*	ENST00000342988	NM_005359.5	116	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0044129-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			312	118	379	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0044129-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	112	271	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602737	10602737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044129-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	438	800	0	ENST00000171111.5:c.841C>A	p.Leu281Met	p.L281M	ENST00000171111	NM_203500.1	281	Ctg/Atg																																																																															
TET2	54790	MSKCC	GRCh37	4	106156066	106156066	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044129-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			357	136	284	0	ENST00000380013.4:c.967C>T	p.Gln323Ter	p.Q323*	ENST00000380013	NM_001127208.2	323	Caa/Taa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207015	1207015	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044129-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			325	285	679	0	ENST00000326873.7:c.103del	p.Ile35SerfsTer16	p.I35Sfs*16	ENST00000326873	NM_000455.4	35	Atc/tc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67590439	67590439	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044129-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			191	76	135	0	ENST00000274335.5:c.1501C>T	p.Gln501Ter	p.Q501*	ENST00000274335		501	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	61	359	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0048141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	64	304	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0048141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	48	222	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119772	17119772	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	162	706	0	ENST00000285071.4:c.1222C>T	p.Gln408Ter	p.Q408*	ENST00000285071	NM_144997.5	408	Cag/Tag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281611	15281611	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	87	642	6	ENST00000263388.2:c.4762A>C	p.Asn1588His	p.N1588H	ENST00000263388	NM_000435.2	1588	Aac/Cac																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1805423	1805423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	428	615	1	ENST00000260795.2:c.935C>T	p.Ala312Val	p.A312V	ENST00000260795		312	gCg/gTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32945147	32945147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	96	285	0	ENST00000380152.3:c.8542G>T	p.Glu2848Ter	p.E2848*	ENST00000380152		2848	Gaa/Taa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061192	38061230	+	inframe_deletion	In_Frame_Del	DEL	AAGCGCTTCTGGCGGCGCAAGTAGCAGCCGTTCTCGAAC	AAGCGCTTCTGGCGGCGCAAGTAGCAGCCGTTCTCGAAC	-			P-0048172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	180	487	0	ENST00000250448.2:c.759_797del	p.Met253_Phe266delinsIle	p.M253_F266delinsI	ENST00000250448	NM_004496.3	253	atGTTCGAGAACGGCTGCTACTTGCGCCGCCAGAAGCGCTTc/atc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58677794	58677794	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	250	667	0	ENST00000305921.3:c.19C>G	p.Leu7Val	p.L7V	ENST00000305921	NM_003620.3	7	Ctg/Gtg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724541	162724541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	193	496	4	ENST00000367921.3:c.313C>T	p.Arg105Cys	p.R105C	ENST00000367921	NM_006182.2	105	Cgc/Tgc																																																																															
NF1	4763	MSKCC	GRCh37	17	29533316	29533316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	109	246	0	ENST00000358273.4:c.1319G>A	p.Arg440Gln	p.R440Q	ENST00000358273	NM_001042492.2	440	cGa/cAa																																																																															
KDR	3791	MSKCC	GRCh37	4	55961059	55961059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	207	593	0	ENST00000263923.4:c.2881C>T	p.Arg961Trp	p.R961W	ENST00000263923	NM_002253.2	961	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0048174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	92	426	1	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048626	180048626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	149	760	0	ENST00000261937.6:c.1936G>A	p.Glu646Lys	p.E646K	ENST00000261937	NM_182925.4	646	Gag/Aag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711359	114711359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	117	228	0	ENST00000543371.1:c.374C>A	p.Ala125Asp	p.A125D	ENST00000543371	NM_001198531.1	125	gCc/gAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436156	56436157	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	240	561	0	ENST00000407977.2:c.980dup	p.Pro328ThrfsTer115	p.P328Tfs*115	ENST00000407977		327	gga/ggGa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877396	40877396	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	327	511	0	ENST00000373198.4:c.2300C>A	p.Ala767Asp	p.A767D	ENST00000373198	NM_133170.3	767	gCt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	28	337	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	85	729	1	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
KDR	3791	MSKCC	GRCh37	4	55970830	55970830	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	32	433	0	ENST00000263923.4:c.1967T>C	p.Val656Ala	p.V656A	ENST00000263923	NM_002253.2	656	gTc/gCc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17125914	17125914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	94	640	1	ENST00000285071.4:c.680C>T	p.Thr227Met	p.T227M	ENST00000285071	NM_144997.5	227	aCg/aTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974713	21974719	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCAGC	GGGCAGC	-			P-0048175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	34	434	0	ENST00000304494.5:c.108_114del	p.Leu37ThrfsTer14	p.L37Tfs*14	ENST00000304494	NM_000077.4	36	gcGCTGCCC/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018529-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			269	103	390	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0018529-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			589	36	482	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018529-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			870	267	1084	1	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0047827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			345	104	361	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			491	193	775	1	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144147	11144147	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			556	199	781	1	ENST00000344626.4:c.3728G>T	p.Arg1243Leu	p.R1243L	ENST00000344626	NM_003072.3	1243	cGg/cTg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123182871	123182871	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	26	262	0	ENST00000218089.9:c.836A>G	p.Asp279Gly	p.D279G	ENST00000218089	NM_001042749.1	279	gAt/gGt																																																																															
MED12	9968	MSKCC	GRCh37	X	70349942	70349942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			612	80	828	0	ENST00000374080.3:c.3925G>A	p.Asp1309Asn	p.D1309N	ENST00000374080		1309	Gac/Aac																																																																															
CBL	867	MSKCC	GRCh37	11	119169188	119169188	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0047827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			465	91	506	0	ENST00000264033.4:c.2372C>G	p.Ser791Ter	p.S791*	ENST00000264033	NM_005188.3	791	tCa/tGa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30047510	30047510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	38	411	0	ENST00000331968.5:c.2491G>T	p.Asp831Tyr	p.D831Y	ENST00000331968	NM_002742.2	831	Gat/Tat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48586263	48586263	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			266	40	458	0	ENST00000342988.3:c.932A>T	p.Gln311Leu	p.Q311L	ENST00000342988	NM_005359.5	311	cAg/cTg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867348	45867348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			641	137	953	0	ENST00000391945.4:c.845G>T	p.Arg282Leu	p.R282L	ENST00000391945	NM_000400.3	282	cGg/cTg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61711216	61711217	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0047827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			259	46	445	0	ENST00000401558.2:c.2532_2533del	p.His844GlnfsTer28	p.H844Qfs*28	ENST00000401558	NM_003400.3	844	caTAga/caga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530068	212530068	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			293	46	324	0	ENST00000342788.4:c.1851C>A	p.Cys617Ter	p.C617*	ENST00000342788	NM_005235.2	617	tgC/tgA																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371740	55371740	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			638	85	637	0	ENST00000297316.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000297316	NM_022454.3	144	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047863-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	82	409	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0047863-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			593	82	600	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0047863-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	43	400	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0047863-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			201	69	238	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662817	227662817	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1273995645		P-0047863-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			402	60	798	0	ENST00000305123.5:c.638G>A	p.Arg213His	p.R213H	ENST00000305123	NM_005544.2	213	cGc/cAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117757	70117758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0047863-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	117	868	0	ENST00000245479.2:c.227_228dup	p.Val77ArgfsTer34	p.V77Rfs*34	ENST00000245479	NM_000346.3	75	-/GC																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55131084	55131084	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0047863-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	18	366	0	ENST00000257290.5:c.629-2A>T		p.X210_splice	ENST00000257290	NM_006206.4	210																																																																																
RBM10	8241	MSKCC	GRCh37	X	47039888	47039900	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTGGGCCATCT	CAGTGGGCCATCT	-			P-0047863-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	72	459	0	ENST00000329236.7:c.999_1011del	p.Gln333HisfsTer70	p.Q333Hfs*70	ENST00000329236	NM_001204466.1	333	CAGTGGGCCATCTca/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0047951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	186	411	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109968	115109968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	454	925	1	ENST00000257566.3:c.1910G>T	p.Arg637Leu	p.R637L	ENST00000257566	NM_016569.3	637	cGg/cTg																																																																															
IL10	3586	MSKCC	GRCh37	1	206945678	206945678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1216	227	600	0	ENST00000423557.1:c.103G>A	p.Gly35Ser	p.G35S	ENST00000423557	NM_000572.2	35	Ggc/Agc																																																																															
RET	5979	MSKCC	GRCh37	10	43609936	43609936	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	361	1152	1	ENST00000355710.3:c.1888T>A	p.Cys630Ser	p.C630S	ENST00000355710	NM_020975.4	630	Tgc/Agc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88671996	88671996	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0047951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	226	481	0	ENST00000372037.3:c.531-1G>A		p.X177_splice	ENST00000372037	NM_004329.2	177																																																																																
ATM	472	MSKCC	GRCh37	11	108160374	108160374	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	104	194	2	ENST00000278616.4:c.4282G>C	p.Glu1428Gln	p.E1428Q	ENST00000278616	NM_000051.3	1428	Gaa/Caa																																																																															
STK11	6794	MSKCC	GRCh37	19	1219402	1219402	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	301	728	0	ENST00000326873.7:c.454C>T	p.Gln152Ter	p.Q152*	ENST00000326873	NM_000455.4	152	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610350	10610366	+	frameshift_variant	Frame_Shift_Del	DEL	CATGCCCTGCTCCCGCA	CATGCCCTGCTCCCGCA	AAT			P-0047951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	574	1111	3	ENST00000171111.5:c.344_360delinsATT	p.Leu115HisfsTer2	p.L115Hfs*2	ENST00000171111	NM_203500.1	115	cTGCGGGAGCAGGGCATG/cATT																																																																															
TERT	7015	MSKCC	GRCh37	5	1282666	1282666	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	400	777	0	ENST00000310581.5:c.1647G>T	p.Met549Ile	p.M549I	ENST00000310581	NM_198253.2	549	atG/atT																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31409205	31409205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	283	540	0	ENST00000344624.3:c.3812C>T	p.Thr1271Ile	p.T1271I	ENST00000344624		1271	aCa/aTa																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115276409	115276409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	113	468	0	ENST00000438362.2:c.919G>A	p.Glu307Lys	p.E307K	ENST00000438362	NM_001242891.1	307	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913535		P-0047953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	324	411	0	ENST00000256078.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000256078	NM_033360.2	13	Ggc/Cgc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865149	57865149	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1299	947	994	0	ENST00000228682.2:c.2626G>T	p.Glu876Ter	p.E876*	ENST00000228682	NM_005269.2	876	Gaa/Taa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28599048	28599048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	131	497	0	ENST00000241453.7:c.2240C>A	p.Pro747Gln	p.P747Q	ENST00000241453	NM_004119.2	747	cCg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576870	7576870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs876659384		P-0047953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	229	777	0	ENST00000269305.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000269305	NM_001126112.2	326	Gaa/Taa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0047953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	96	266	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
ATR	545	MSKCC	GRCh37	3	142215872	142215872	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	78	316	0	ENST00000350721.4:c.5721A>T	p.Leu1907Phe	p.L1907F	ENST00000350721	NM_001184.3	1907	ttA/ttT																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564465	86564466	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	213	765	0	ENST00000274376.6:c.200dup	p.Leu67PhefsTer45	p.L67Ffs*45	ENST00000274376	NM_002890.2	66	gct/gcTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340386	8340386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	135	566	0	ENST00000356435.5:c.5210C>A	p.Ser1737Tyr	p.S1737Y	ENST00000356435		1737	tCc/tAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931969	39931969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1096	235	940	1	ENST00000378444.4:c.2630C>A	p.Thr877Asn	p.T877N	ENST00000378444	NM_001123385.1	877	aCc/aAc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332839	152332840	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0047953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	275	494	0	ENST00000206249.3:c.1145_1146delinsT	p.Ala382ValfsTer3	p.A382Vfs*3	ENST00000206249	NM_000125.3	382	gCC/gT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0047957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	106	386	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857475	9857475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	49	390	0	ENST00000330684.3:c.3926G>A	p.Arg1309Gln	p.R1309Q	ENST00000330684	NM_001134407.1	1309	cGg/cAg																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675064	40675064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	91	682	3	ENST00000249776.8:c.28G>T	p.Asp10Tyr	p.D10Y	ENST00000249776	NM_033286.3	10	Gac/Tac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600046	10600046	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0047957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	174	676	0	ENST00000171111.5:c.1532-2A>G		p.X511_splice	ENST00000171111	NM_203500.1	511																																																																																
PMS1	5378	MSKCC	GRCh37	2	190708759	190708759	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	74	312	0	ENST00000441310.2:c.652G>C	p.Val218Leu	p.V218L	ENST00000441310	NM_000534.4	218	Gtt/Ctt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628099	187628099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	119	491	0	ENST00000441802.2:c.2883G>T	p.Gln961His	p.Q961H	ENST00000441802	NM_005245.3	961	caG/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0047959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	82	655	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582873	95582873	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	36	251	0	ENST00000343455.3:c.1669A>T	p.Ile557Phe	p.I557F	ENST00000343455	NM_177438.2	557	Atc/Ttc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68982069	68982069	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0047959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	132	458	0	ENST00000288368.4:c.1444-1G>T		p.X482_splice	ENST00000288368	NM_024870.2	482																																																																																
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0047962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	83	518	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
SYK	6850	MSKCC	GRCh37	9	93636522	93636522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	95	501	0	ENST00000375746.1:c.952G>A	p.Val318Met	p.V318M	ENST00000375746	NM_001174167.1	318	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	47	277	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0048033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	106	840	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974679	21974679	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A	rs864622636		P-0048033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	64	454	0	ENST00000304494.5:c.148C>T	p.Gln50Ter	p.Q50*	ENST00000304494	NM_000077.4	50	Cag/Tag																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199897	138199897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	20	455	0	ENST00000237289.4:c.1315C>T	p.Arg439Trp	p.R439W	ENST00000237289	NM_001270507.1	439	Cgg/Tgg																																																																															
MET	4233	MSKCC	GRCh37	7	116436137	116436137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	44	288	0	ENST00000397752.3:c.4132G>A	p.Glu1378Lys	p.E1378K	ENST00000397752	NM_000245.2	1378	Gag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874827	151874827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	76	256	0	ENST00000262189.6:c.7711C>T	p.Arg2571Trp	p.R2571W	ENST00000262189	NM_170606.2	2571	Cgg/Tgg																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127933380	127933380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	38	373	0	ENST00000373547.4:c.155G>A	p.Gly52Glu	p.G52E	ENST00000373547	NM_002721.4	52	gGa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0048034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	43	200	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0048034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	162	287	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0048034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	111	575	0	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033252	69033252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	62	331	0	ENST00000288368.4:c.3692C>A	p.Thr1231Asn	p.T1231N	ENST00000288368	NM_024870.2	1231	aCt/aAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912181	114912181	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	82	387	0	ENST00000543371.1:c.1251G>C	p.Trp417Cys	p.W417C	ENST00000543371	NM_001198531.1	417	tgG/tgC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578206	7578207	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	117	518	1	ENST00000269305.4:c.642dup	p.Ser215Ter	p.S215*	ENST00000269305	NM_001126112.2	214	-/T																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370266	40370266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	88	633	0	ENST00000293328.3:c.1072G>A	p.Gly358Arg	p.G358R	ENST00000293328	NM_012448.3	358	Ggg/Agg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509780	187509780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	21	209	0	ENST00000441802.2:c.13733C>T	p.Pro4578Leu	p.P4578L	ENST00000441802	NM_005245.3	4578	cCg/cTg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101910006	101910006	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	41	138	0	ENST00000374994.4:c.1329del	p.Val444LeufsTer7	p.V444Lfs*7	ENST00000374994	NM_004612.2	442	agA/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0048037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1195	45	873	2	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0048037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	54	622	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180038335	180038335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	43	681	1	ENST00000261937.6:c.3682G>A	p.Ala1228Thr	p.A1228T	ENST00000261937	NM_182925.4	1228	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0048038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	261	780	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
BARD1	580	MSKCC	GRCh37	2	215632308	215632308	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	135	430	0	ENST00000260947.4:c.1466C>A	p.Thr489Asn	p.T489N	ENST00000260947	NM_000465.2	489	aCc/aAc																																																																															
APC	324	MSKCC	GRCh37	5	112174086	112174086	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	83	215	0	ENST00000257430.4:c.2795del	p.Ser932Ter	p.S932*	ENST00000257430	NM_000038.5	932	tCa/ta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	55	345	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0048039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	42	752	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918596	44918597	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0048039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	41	416	0	ENST00000377967.4:c.1083_1084del	p.Tyr362Ter	p.Y362*	ENST00000377967	NM_021140.2	360	aCT/a																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933904	39933904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	30	867	0	ENST00000378444.4:c.695C>T	p.Pro232Leu	p.P232L	ENST00000378444	NM_001123385.1	232	cCg/cTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974696	21974701	+	inframe_deletion	In_Frame_Del	DEL	TAACTA	TAACTA	-			P-0048039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	61	503	0	ENST00000304494.5:c.126_131del	p.Ser43_Tyr44del	p.S43_Y44del	ENST00000304494	NM_000077.4	42	aaTAGTTAc/aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	85	798	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	44	252	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	64	646	0	ENST00000269305.4:c.808T>G	p.Phe270Val	p.F270V	ENST00000269305	NM_001126112.2	270	Ttt/Gtt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244392	5244392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	160	837	6	ENST00000357368.4:c.1090G>A	p.Val364Ile	p.V364I	ENST00000357368	NM_002850.3	364	Gtc/Atc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0048041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	33	230	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0048041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	22	222	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
RHEB	6009	MSKCC	GRCh37	7	151188049	151188049	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	29	146	0	ENST00000262187.5:c.104A>G	p.Tyr35Cys	p.Y35C	ENST00000262187	NM_005614.3	35	tAc/tGc																																																																															
RARA	5914	MSKCC	GRCh37	17	38510639	38510639	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	52	651	0	ENST00000254066.5:c.893A>G	p.His298Arg	p.H298R	ENST00000254066	NM_000964.3	298	cAc/cGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604761	48604766	+	frameshift_variant	Frame_Shift_Del	DEL	ACTTAC	ACTTAC	TT			P-0048041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	28	236	1	ENST00000342988.3:c.1583_1588delinsTT	p.His528LeufsTer8	p.H528Lfs*8	ENST00000342988	NM_005359.5	528	cACTTACac/cTTac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0048053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	154	778	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0048053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	76	424	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481671	56481671	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	187	809	0	ENST00000267101.3:c.706T>C	p.Ser236Pro	p.S236P	ENST00000267101	NM_001982.3	236	Tca/Cca																																																																															
TERT	7015	MSKCC	GRCh37	5	1293605	1293605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1389	260	1302	1	ENST00000310581.5:c.1396C>T	p.Arg466Trp	p.R466W	ENST00000310581	NM_198253.2	466	Cgg/Tgg																																																																															
TET2	54790	MSKCC	GRCh37	4	106158148	106158148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	69	317	0	ENST00000380013.4:c.3049G>A	p.Asp1017Asn	p.D1017N	ENST00000380013	NM_001127208.2	1017	Gat/Aat																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729668	162729668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	105	615	1	ENST00000367921.3:c.754C>T	p.Pro252Ser	p.P252S	ENST00000367921	NM_006182.2	252	Ccc/Tcc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105522	11105522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	113	510	0	ENST00000344626.4:c.1438C>T	p.Leu480Phe	p.L480F	ENST00000344626	NM_003072.3	480	Ctc/Ttc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211048	36211048	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0048053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1398	226	1164	1	ENST00000222270.7:c.799A>T	p.Lys267Ter	p.K267*	ENST00000222270	NM_014727.1	267	Aaa/Taa																																																																															
KIT	3815	MSKCC	GRCh37	4	55599331	55599331	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	83	403	1	ENST00000288135.5:c.2457T>A	p.Asn819Lys	p.N819K	ENST00000288135	NM_000222.2	819	aaT/aaA																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0048076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	49	303	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	207	916	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0048076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	60	300	1	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	48	276	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771828	135771828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	176	820	0	ENST00000298552.3:c.3289C>T	p.Arg1097Cys	p.R1097C	ENST00000298552	NM_001162426.1	1097	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0048076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	149	377	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325792	65325792	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	102	440	0	ENST00000342505.4:c.1330A>G	p.Ile444Val	p.I444V	ENST00000342505	NM_002227.2	444	Atc/Gtc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212459	5212459	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182037655		P-0048076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	206	1001	0	ENST00000357368.4:c.4658C>T	p.Thr1553Met	p.T1553M	ENST00000357368	NM_002850.3	1553	aCg/aTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435756	110435756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	70	187	0	ENST00000375856.3:c.2645G>A	p.Gly882Asp	p.G882D	ENST00000375856	NM_003749.2	882	gGc/gAc																																																																															
CD276	80381	MSKCC	GRCh37	15	74000691	74000691	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	220	868	0	ENST00000318443.5:c.1381A>G	p.Thr461Ala	p.T461A	ENST00000318443	NM_001024736.1	461	Aca/Gca																																																																															
REL	5966	MSKCC	GRCh37	2	61145537	61145537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	58	329	0	ENST00000295025.8:c.649G>A	p.Glu217Lys	p.E217K	ENST00000295025	NM_002908.2	217	Gaa/Aaa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385170	41385171	+	missense_variant	Missense_Mutation	DNP	TT	TT	GG			P-0048078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	19	858	0	ENST00000373198.4:c.790_791delinsCC	p.Lys264Pro	p.K264P	ENST00000373198	NM_133170.3	264	AAg/CCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991835	72991835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	105	631	1	ENST00000268489.5:c.2210C>T	p.Thr737Ile	p.T737I	ENST00000268489	NM_006885.3	737	aCc/aTc																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45651322	45651322	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	87	554	1	ENST00000407780.3:c.703G>T	p.Asp235Tyr	p.D235Y	ENST00000407780	NM_001283052.1	235	Gac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	38	249	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	30	740	6	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																															
TET1	80312	MSKCC	GRCh37	10	70446284	70446284	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	51	457	0	ENST00000373644.4:c.5230del	p.Arg1744GlufsTer18	p.R1744Efs*18	ENST00000373644	NM_030625.2	1742	Aaa/aa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	19	382	0	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467828	50467828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	45	543	0	ENST00000331340.3:c.1063G>A	p.Ala355Thr	p.A355T	ENST00000331340	NM_006060.4	355	Gcg/Acg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	40	817	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168741	56168741	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775802110		P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	22	273	0	ENST00000399503.3:c.1595G>A	p.Arg532Gln	p.R532Q	ENST00000399503	NM_005921.1	532	cGa/cAa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	43	272	1	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	63	399	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858185	27858185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	44	486	0	ENST00000359303.2:c.386G>A	p.Arg129His	p.R129H	ENST00000359303	NM_003535.2	129	cGt/cAt																																																																															
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	35	506	0	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245586	41245587	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	83	513	5	ENST00000357654.3:c.1961dup	p.Tyr655ValfsTer18	p.Y655Vfs*18	ENST00000357654	NM_007294.3	654	aag/aaAg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274196	10274196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	64	493	0	ENST00000330684.3:c.73G>A	p.Ala25Thr	p.A25T	ENST00000330684	NM_001134407.1	25	Gcg/Acg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271699	15271699	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	45	1035	1	ENST00000263388.2:c.6740del	p.Pro2247HisfsTer82	p.P2247Hfs*82	ENST00000263388	NM_000435.2	2247	cCa/ca																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070324	37070324	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63749795		P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	50	321	0	ENST00000231790.2:c.1459C>T	p.Arg487Ter	p.R487*	ENST00000231790	NM_000249.3	487	Cga/Tga																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	112	397	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128420047	128420047	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	70	531	0	ENST00000265960.3:c.381del	p.Lys127AsnfsTer20	p.K127Nfs*20	ENST00000265960	NM_001006617.1	127	aaA/aa																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182001	38182001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	62	539	0	ENST00000396334.3:c.625C>T	p.Arg209Cys	p.R209C	ENST00000396334	NM_002468.4	209	Cgc/Tgc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	32	496	2	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825539	50825539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762650238		P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	44	317	0	ENST00000398568.2:c.2170G>A	p.Val724Ile	p.V724I	ENST00000398568	NM_001042412.1	724	Gtt/Att																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026915	6026915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	18	123	1	ENST00000265849.7:c.1481C>T	p.Ser494Leu	p.S494L	ENST00000265849	NM_000535.5	494	tCg/tTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874013	151874013	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	22	377	0	ENST00000262189.6:c.8525delA	p.Asn2842MetfsTer21	p.N2842Mfs*21	ENST00000262189	NM_170606.2	2842	aAt/at																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326695	62326695	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs140411308		P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	116	901	0	ENST00000482936.1:c.3514G>A	p.Glu1172Lys	p.E1172K	ENST00000482936		1172	Gag/Aag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230692	46230692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	12	322	0	ENST00000334344.6:c.941G>A	p.Arg314His	p.R314H	ENST00000334344	NM_152641.2	314	cGt/cAt																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813325	102813325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	40	553	0	ENST00000307046.8:c.364C>T	p.Arg122Cys	p.R122C	ENST00000307046	NM_001111285.1	122	Cgt/Tgt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741892	145741892	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	53	804	1	ENST00000428558.2:c.611C>G	p.Ala204Gly	p.A204G	ENST00000428558	NM_004260.3	204	gCc/gGc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129646	2129646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	44	975	4	ENST00000219476.3:c.3373C>T	p.Arg1125Trp	p.R1125W	ENST00000219476	NM_000548.3	1125	Cgg/Tgg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37081682	37081682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	27	304	0	ENST00000231790.2:c.1564C>T	p.Arg522Trp	p.R522W	ENST00000231790	NM_000249.3	522	Cgg/Tgg																																																																															
CASP8	841	MSKCC	GRCh37	2	202141587	202141587	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	20	323	0	ENST00000358485.4:c.878delG	p.Gly293AspfsTer4	p.G293Dfs*4	ENST00000358485	NM_001080125.1	292	cGg/cg																																																																															
TET2	54790	MSKCC	GRCh37	4	106196381	106196381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	31	319	0	ENST00000380013.4:c.4714C>T	p.Arg1572Trp	p.R1572W	ENST00000380013	NM_001127208.2	1572	Cgg/Tgg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651313	52651313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	27	345	0	ENST00000394830.3:c.1783C>T	p.Arg595Trp	p.R595W	ENST00000394830	NM_018313.4	595	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097672	11097672	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	66	831	2	ENST00000344626.4:c.852G>A	p.Trp284Ter	p.W284*	ENST00000344626	NM_003072.3	284	tgG/tgA																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255077	16255077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	27	338	0	ENST00000375759.3:c.2342G>A	p.Arg781His	p.R781H	ENST00000375759	NM_015001.2	781	cGt/cAt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120509040	120509040	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	48	444	0	ENST00000256646.2:c.1526G>T	p.Cys509Phe	p.C509F	ENST00000256646	NM_024408.3	509	tGt/tTt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845875	156845875	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	46	855	0	ENST00000524377.1:c.1505T>C	p.Val502Ala	p.V502A	ENST00000524377	NM_002529.3	502	gTt/gCt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012327	176012327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	21	272	0	ENST00000367669.3:c.1607C>T	p.Ala536Val	p.A536V	ENST00000367669	NM_022457.5	536	gCa/gTa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	394705	394706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	30	438	0	ENST00000399788.2:c.4989dup	p.Pro1664AlafsTer3	p.P1664Afs*3	ENST00000399788	NM_001042603.1	1663	-/G																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427420	427421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	80	559	0	ENST00000399788.2:c.2748dup	p.Val917SerfsTer28	p.V917Sfs*28	ENST00000399788	NM_001042603.1	916	-/A																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436550	49436550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200741577		P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	40	655	1	ENST00000301067.7:c.5756C>T	p.Thr1919Met	p.T1919M	ENST00000301067	NM_003482.3	1919	aCg/aTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860047	57860047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	84	738	1	ENST00000228682.2:c.787G>A	p.Gly263Arg	p.G263R	ENST00000228682	NM_005269.2	263	Ggg/Agg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416720	121416722	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	97	916	0	ENST00000257555.6:c.156_158del	p.Gly53del	p.G53del	ENST00000257555		50	tGCGgc/tgc																																																																															
POLE	5426	MSKCC	GRCh37	12	133250288	133250288	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	28	514	0	ENST00000320574.5:c.1232T>C	p.Val411Ala	p.V411A	ENST00000320574	NM_006231.2	411	gTg/gCg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26959365	26959365	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	35	276	1	ENST00000381527.3:c.532C>T	p.Arg178Ter	p.R178*	ENST00000381527	NM_001260.1	178	Cga/Tga																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346034	73346034	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	20	177	0	ENST00000377767.4:c.1504G>A	p.Val502Ile	p.V502I	ENST00000377767	NM_014953.3	502	Gtt/Att																																																																															
MGA	23269	MSKCC	GRCh37	15	42040859	42040859	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	37	422	0	ENST00000219905.7:c.5237C>G	p.Ala1746Gly	p.A1746G	ENST00000219905	NM_001164273.1	1746	gCt/gGt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99250814	99250814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	40	432	0	ENST00000268035.6:c.118C>T	p.Arg40Cys	p.R40C	ENST00000268035	NM_000875.3	40	Cgc/Tgc																																																																															
CBFB	865	MSKCC	GRCh37	16	67070659	67070659	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	10	133	0	ENST00000412916.2:c.282+1G>A		p.X94_splice	ENST00000412916		94																																																																																
ANKRD11	29123	MSKCC	GRCh37	16	89351463	89351464	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	53	650	0	ENST00000301030.4:c.1486_1487del	p.Leu496GlyfsTer82	p.L496Gfs*82	ENST00000301030	NM_001256183.1	496	CTg/g																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351898	89351898	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	48	834	0	ENST00000301030.4:c.1052A>C	p.Glu351Ala	p.E351A	ENST00000301030	NM_001256183.1	351	gAg/gCg																																																																															
BCL2	596	MSKCC	GRCh37	18	60985347	60985347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	40	646	0	ENST00000333681.4:c.553C>A	p.Leu185Met	p.L185M	ENST00000333681		185	Ctg/Atg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4102386	4102386	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	53	781	0	ENST00000262948.5:c.516A>C	p.Lys172Asn	p.K172N	ENST00000262948	NM_030662.3	172	aaA/aaC																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170813	11170813	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	61	714	0	ENST00000344626.4:c.4861C>T	p.Arg1621Ter	p.R1621*	ENST00000344626	NM_003072.3	1621	Cga/Tga																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130401	29130401	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	36	411	0	ENST00000328354.6:c.309del	p.Phe103LeufsTer7	p.F103Lfs*7	ENST00000328354	NM_007194.3	103	ttT/tt																																																																															
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	51	769	0	ENST00000263253.7:c.6969_6970dup	p.His2324ProfsTer30	p.H2324Pfs*30	ENST00000263253	NM_001429.3	2321	-/CC																																																																															
MLH1	4292	MSKCC	GRCh37	3	37059000	37059000	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	35	259	0	ENST00000231790.2:c.794G>C	p.Arg265Pro	p.R265P	ENST00000231790	NM_000249.3	265	cGt/cCt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49935983	49935983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	37	781	1	ENST00000296474.3:c.1687C>T	p.Gln563Ter	p.Q563*	ENST00000296474	NM_002447.2	563	Caa/Taa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89456496	89456497	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	31	311	0	ENST00000336596.2:c.1674dup	p.Val559CysfsTer13	p.V559Cfs*13	ENST00000336596	NM_005233.5	558	gtt/gTtt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538268	187538269	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	35	438	0	ENST00000441802.2:c.8965dup	p.Arg2989LysfsTer12	p.R2989Kfs*12	ENST00000441802	NM_005245.3	2989	agg/aAgg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31521285	31521285	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	60	403	0	ENST00000344624.3:c.892C>T	p.Arg298Ter	p.R298*	ENST00000344624		298	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175181	112175182	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	18	182	0	ENST00000257430.4:c.3892dup	p.Ser1298PhefsTer3	p.S1298Ffs*3	ENST00000257430	NM_000038.5	1297	gat/gaTt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249630	110249630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	71	995	2	ENST00000374672.4:c.1045C>A	p.Pro349Thr	p.P349T	ENST00000374672	NM_004235.4	349	Cca/Aca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399458	139399458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	110	987	2	ENST00000277541.6:c.4685C>A	p.Ala1562Glu	p.A1562E	ENST00000277541	NM_017617.3	1562	gCg/gAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041418	47041418	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	23	330	0	ENST00000329236.7:c.1528C>A	p.Leu510Ile	p.L510I	ENST00000329236	NM_001204466.1	510	Ctc/Atc																																																																															
AR	367	MSKCC	GRCh37	X	66765913	66765913	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	34	465	0	ENST00000374690.3:c.925T>C	p.Tyr309His	p.Y309H	ENST00000374690	NM_000044.3	309	Tat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0048083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	175	582	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0048083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	85	219	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061220	38061225	+	inframe_deletion	In_Frame_Del	DEL	CGTTCT	CGTTCT	-			P-0048085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	108	666	0	ENST00000250448.2:c.764_769del	p.Glu255_Asn256del	p.E255_N256del	ENST00000250448	NM_004496.3	255	gAGAACGgc/ggc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176132088	176132088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	120	288	0	ENST00000367669.3:c.679G>A	p.Gly227Arg	p.G227R	ENST00000367669	NM_022457.5	227	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579524	7579530	+	frameshift_variant	Frame_Shift_Del	DEL	TGAACCA	TGAACCA	-			P-0048085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	118	704	0	ENST00000269305.4:c.157_163del	p.Trp53LeufsTer68	p.W53Lfs*68	ENST00000269305	NM_001126112.2	53	TGGTTCAct/ct																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0048086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	59	165	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	90	297	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	50	168	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175536	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	72	228	0	ENST00000257430.4:c.4245del	p.Ser1415ArgfsTer4	p.S1415Rfs*4	ENST00000257430	NM_000038.5	1415	agT/ag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347732	89347732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	243	765	2	ENST00000301030.4:c.5218G>A	p.Ala1740Thr	p.A1740T	ENST00000301030	NM_001256183.1	1740	Gcc/Acc																																																																															
MITF	4286	MSKCC	GRCh37	3	69928368	69928368	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	106	398	0	ENST00000352241.4:c.188T>C	p.Leu63Pro	p.L63P	ENST00000352241	NM_198159.2	63	cTc/cCc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468107	50468107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	184	558	0	ENST00000331340.3:c.1342G>A	p.Ala448Thr	p.A448T	ENST00000331340	NM_006060.4	448	Gcg/Acg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	174	203	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0048089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	393	610	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101300	27101300	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	177	640	0	ENST00000324856.7:c.4582C>T	p.Arg1528Ter	p.R1528*	ENST00000324856	NM_006015.4	1528	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880998	37880998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1380	686	692	0	ENST00000269571.5:c.2327G>T	p.Gly776Val	p.G776V	ENST00000269571		776	gGt/gTt																																																																															
CDH1	999	MSKCC	GRCh37	16	68772299	68772321	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGCGTCCTGGGCAGAGGTGAGGG	CGCGTCCTGGGCAGAGGTGAGGG	-			P-0048089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	195	779	0	ENST00000261769.5:c.152_163+11del		p.X51_splice	ENST00000261769	NM_004360.3	51																																																																																
CBFB	865	MSKCC	GRCh37	16	67070608	67070608	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	105	167	1	ENST00000412916.2:c.232C>T	p.Arg78Ter	p.R78*	ENST00000412916		78	Cga/Tga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272138	15272138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	227	775	0	ENST00000263388.2:c.6301C>T	p.Pro2101Ser	p.P2101S	ENST00000263388	NM_000435.2	2101	Ccc/Tcc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176662828	176662828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	76	198	0	ENST00000439151.2:c.3803G>A	p.Arg1268Gln	p.R1268Q	ENST00000439151	NM_022455.4	1268	cGg/cAg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32915096	32915096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	112	322	0	ENST00000380152.3:c.6604G>A	p.Asp2202Asn	p.D2202N	ENST00000380152		2202	Gat/Aat																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779876	3779876	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0048089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	183	580	0	ENST00000262367.5:c.5173-1G>A		p.X1725_splice	ENST00000262367	NM_004380.2	1725																																																																																
MLH1	4292	MSKCC	GRCh37	3	37089038	37089038	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	95	248	2	ENST00000231790.2:c.1760T>C	p.Met587Thr	p.M587T	ENST00000231790	NM_000249.3	587	aTg/aCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	9	279	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	33	168	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0048091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	144	317	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0048091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	456	722	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11132581	11132581	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	148	799	0	ENST00000344626.4:c.2797T>G	p.Phe933Val	p.F933V	ENST00000344626	NM_003072.3	933	Ttc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	315	703	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0048108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	138	319	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
RB1	5925	MSKCC	GRCh37	13	48954210	48954210	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	49	198	0	ENST00000267163.4:c.1411C>T	p.Gln471Ter	p.Q471*	ENST00000267163	NM_000321.2	471	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0048114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	325	710	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29676271	29676271	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0048114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	45	290	0	ENST00000358273.4:c.7321+2T>A		p.X2441_splice	ENST00000358273	NM_001042492.2	2441																																																																																
FLT1	2321	MSKCC	GRCh37	13	28893659	28893659	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	185	453	0	ENST00000282397.4:c.3187C>G	p.Leu1063Val	p.L1063V	ENST00000282397	NM_002019.4	1063	Ctg/Gtg																																																																															
APC	324	MSKCC	GRCh37	5	112173992	112173992	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	143	335	0	ENST00000257430.4:c.2701C>T	p.Gln901Ter	p.Q901*	ENST00000257430	NM_000038.5	901	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692856	89692856	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	90	154	0	ENST00000371953.3:c.340G>T	p.Glu114Ter	p.E114*	ENST00000371953	NM_000314.4	114	Gaa/Taa																																																																															
ACVR1	90	MSKCC	GRCh37	2	158617503	158617503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	265	470	0	ENST00000263640.3:c.1153G>A	p.Glu385Lys	p.E385K	ENST00000263640	NM_001105.4	385	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380282	25380282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	231	543	0	ENST00000256078.4:c.176C>A	p.Ala59Glu	p.A59E	ENST00000256078	NM_033360.2	59	gCa/gAa																																																																															
SUFU	51684	MSKCC	GRCh37	10	104309777	104309777	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745958724		P-0048114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	347	694	1	ENST00000369902.3:c.368G>A	p.Arg123His	p.R123H	ENST00000369902	NM_016169.3	123	cGt/cAt																																																																															
ERF	2077	MSKCC	GRCh37	19	42752859	42752859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	460	918	1	ENST00000222329.4:c.1405G>A	p.Gly469Ser	p.G469S	ENST00000222329	NM_006494.2	469	Ggc/Agc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633294	3633294	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1129	242	1064	2	ENST00000294008.3:c.4957del	p.Ala1653ProfsTer62	p.A1653Pfs*62	ENST00000294008	NM_032444.2	1653	Gcc/cc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681047	30681047	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	355	505	0	ENST00000376406.3:c.672A>C	p.Glu224Asp	p.E224D	ENST00000376406	NM_014641.2	224	gaA/gaC																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528727	8528727	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	272	413	0	ENST00000356435.5:c.405G>T	p.Lys135Asn	p.K135N	ENST00000356435		135	aaG/aaT																																																																															
ABL1	25	MSKCC	GRCh37	9	133738219	133738219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	599	611	2	ENST00000318560.5:c.619G>A	p.Asp207Asn	p.D207N	ENST00000318560	NM_005157.4	207	Gac/Aac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289742	15289751	+	protein_altering_variant,splice_region_variant	In_Frame_Del	DEL	ACAGCGAGGA	ACAGCGAGGA	T			P-0048114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	288	892	0	ENST00000263388.2:c.3720_3729delinsA	p.Pro1241_Cys1243del	p.P1241_C1243del	ENST00000263388	NM_000435.2	1240	ggTCCTCGCTGT/ggA																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259667	16259667	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	35	394	0	ENST00000375759.3:c.6932C>G	p.Ser2311Ter	p.S2311*	ENST00000375759	NM_015001.2	2311	tCa/tGa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242478	+	protein_altering_variant	In_Frame_Del	DEL	GAATTAAGAGAAG	GAATTAAGAGAAG	C			P-0048160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	61	344	0	ENST00000275493.2:c.2236_2248delinsC	p.Glu746_Ala750delinsPro	p.E746_A750delinsP	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGca/Cca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0048162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	95	418	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	142	886	0	ENST00000269305.4:c.395A>T	p.Lys132Met	p.K132M	ENST00000269305	NM_001126112.2	132	aAg/aTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133256177	133256177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	65	599	1	ENST00000320574.5:c.484G>T	p.Asp162Tyr	p.D162Y	ENST00000320574	NM_006231.2	162	Gat/Tat																																																																															
MTOR	2475	MSKCC	GRCh37	1	11288925	11288925	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	56	576	1	ENST00000361445.4:c.2830G>T	p.Asp944Tyr	p.D944Y	ENST00000361445	NM_004958.3	944	Gat/Tat																																																																															
PARP1	142	MSKCC	GRCh37	1	226568795	226568795	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	59	654	0	ENST00000366794.5:c.1274A>T	p.Lys425Met	p.K425M	ENST00000366794	NM_001618.3	425	aAg/aTg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742927	17742927	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	71	920	1	ENST00000250003.3:c.835C>A	p.Pro279Thr	p.P279T	ENST00000250003	NM_002478.4	279	Cct/Act																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625208	69625208	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1152	68	1002	0	ENST00000334134.2:c.585G>C	p.Gln195His	p.Q195H	ENST00000334134	NM_005247.2	195	caG/caC																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941471	71941471	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1141	67	934	0	ENST00000298229.2:c.1156G>T	p.Asp386Tyr	p.D386Y	ENST00000298229	NM_001567.3	386	Gac/Tac																																																																															
RECQL	5965	MSKCC	GRCh37	12	21636327	21636327	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	45	328	0	ENST00000421138.2:c.683del	p.Gly228AspfsTer14	p.G228Dfs*14	ENST00000421138		228	gGa/ga																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945046	31945046	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	191	836	0	ENST00000340398.3:c.55A>C	p.Lys19Gln	p.K19Q	ENST00000340398	NM_001013699.2	19	Aaa/Caa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120921	115120921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	65	739	1	ENST00000257566.3:c.85G>A	p.Ala29Thr	p.A29T	ENST00000257566	NM_016569.3	29	Gcc/Acc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50826571	50826571	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	42	124	0	ENST00000398568.2:c.2296A>G	p.Ile766Val	p.I766V	ENST00000398568	NM_001042412.1	766	Att/Gtt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561440	9561442	+	missense_variant	Missense_Mutation	ONP	GCT	GCT	AAG			P-0048162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	59	577	1	ENST00000353224.5:c.340_342delinsCTT	p.Ser114Leu	p.S114L	ENST00000353224	NM_177990.2	114	AGC/CTT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163062	47163063	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-			P-0048162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	57	307	0	ENST00000409792.3:c.3063_3064del	p.Cys1021Ter	p.C1021*	ENST00000409792	NM_014159.6	1021	tgTGac/tgac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259376	89259376	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	36	387	0	ENST00000336596.2:c.520G>T	p.Val174Phe	p.V174F	ENST00000336596	NM_005233.5	174	Gtc/Ttc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879672	151879672	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	23	216	0	ENST00000262189.6:c.5273G>T	p.Arg1758Leu	p.R1758L	ENST00000262189	NM_170606.2	1758	cGt/cTt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98220294	98220294	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0048162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	91	341	0	ENST00000331920.6:c.3168+1G>T		p.X1056_splice	ENST00000331920	NM_000264.3	1056																																																																																
RBM10	8241	MSKCC	GRCh37	X	47039665	47039665	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	88	857	1	ENST00000329236.7:c.883G>T	p.Asp295Tyr	p.D295Y	ENST00000329236	NM_001204466.1	295	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0048167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	25	625	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849852	156849852	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	35	600	0	ENST00000524377.1:c.2108A>C	p.Lys703Thr	p.K703T	ENST00000524377	NM_002529.3	703	aAg/aCg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457304	67457304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	33	770	2	ENST00000327367.4:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000327367	NM_005902.3	93	cGa/cAa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001578	150001578	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	17	269	0	ENST00000253339.5:c.2026G>C	p.Asp676His	p.D676H	ENST00000253339		676	Gat/Cat																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3832810	3832810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	32	517	0	ENST00000262367.5:c.1448G>A	p.Arg483Gln	p.R483Q	ENST00000262367	NM_004380.2	483	cGa/cAa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11297908	11297908	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	25	463	0	ENST00000361445.4:c.2200C>G	p.Leu734Val	p.L734V	ENST00000361445	NM_004958.3	734	Ctc/Gtc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134471	41134471	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0048167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	33	446	0	ENST00000379561.5:c.1157C>G	p.Ser386Ter	p.S386*	ENST00000379561	NM_002015.3	386	tCa/tGa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060869	38060869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	46	749	1	ENST00000250448.2:c.1120C>T	p.His374Tyr	p.H374Y	ENST00000250448	NM_004496.3	374	Cac/Tac																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68758609	68758609	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	100	407	0	ENST00000487270.1:c.765G>C	p.Leu255Phe	p.L255F	ENST00000487270	NM_133509.3	255	ttG/ttC																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457623	67457623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	39	685	0	ENST00000327367.4:c.433G>A	p.Glu145Lys	p.E145K	ENST00000327367	NM_005902.3	145	Gag/Aag																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257883	19257883	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	127	935	0	ENST00000162023.5:c.503C>G	p.Ser168Cys	p.S168C	ENST00000162023		168	tCt/tGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921500	178921500	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	22	342	0	ENST00000263967.3:c.982T>C	p.Trp328Arg	p.W328R	ENST00000263967	NM_006218.2	328	Tgg/Cgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	56	567	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434713	110434713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	147	710	4	ENST00000375856.3:c.3688G>A	p.Gly1230Ser	p.G1230S	ENST00000375856	NM_003749.2	1230	Ggt/Agt																																																																															
RB1	5925	MSKCC	GRCh37	13	48916850	48916850	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	16	196	0	ENST00000267163.4:c.380G>A	p.Ser127Asn	p.S127N	ENST00000267163	NM_000321.2	127	aGt/aAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	31	374	0	ENST00000371085.3:c.601C>A	p.Arg201Ser	p.R201S	ENST00000371085	NM_000516.4	201	Cgt/Agt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200690	128200690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	43	663	0	ENST00000341105.2:c.1115C>T	p.Ala372Val	p.A372V	ENST00000341105	NM_032638.4	372	gCc/gTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100870	27100870	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	28	442	0	ENST00000324856.7:c.4152C>G	p.His1384Gln	p.H1384Q	ENST00000324856	NM_006015.4	1384	caC/caG																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39311689	39311689	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	20	461	0	ENST00000373001.3:c.970A>T	p.Thr324Ser	p.T324S	ENST00000373001	NM_022157.3	324	Act/Tct																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115276457	115276457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	25	353	0	ENST00000438362.2:c.871G>A	p.Val291Ile	p.V291I	ENST00000438362	NM_001242891.1	291	Gtc/Atc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156841454	156841454	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	121	478	0	ENST00000524377.1:c.757A>T	p.Asn253Tyr	p.N253Y	ENST00000524377	NM_002529.3	253	Aat/Tat																																																																															
SDHC	6391	MSKCC	GRCh37	1	161293460	161293460	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	35	215	0	ENST00000367975.2:c.77A>T	p.Asn26Ile	p.N26I	ENST00000367975	NM_003001.3	26	aAt/aTt																																																																															
RET	5979	MSKCC	GRCh37	10	43613851	43613851	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	64	599	0	ENST00000355710.3:c.2315T>A	p.Leu772Gln	p.L772Q	ENST00000355710	NM_020975.4	772	cTg/cAg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112910808	112910808	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	33	275	0	ENST00000351677.2:c.817A>T	p.Asn273Tyr	p.N273Y	ENST00000351677	NM_002834.3	273	Aac/Tac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3795278	3795278	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	32	291	0	ENST00000262367.5:c.3914G>T	p.Gly1305Val	p.G1305V	ENST00000262367	NM_004380.2	1305	gGt/gTt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81916887	81916887	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	43	506	0	ENST00000359376.3:c.707del	p.Pro236ArgfsTer27	p.P236Rfs*27	ENST00000359376	NM_002661.3	236	Ccg/cg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59885935	59885935	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	17	322	0	ENST00000259008.2:c.811G>C	p.Val271Leu	p.V271L	ENST00000259008	NM_032043.2	271	Gtt/Ctt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39573276	39573276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	20	282	0	ENST00000262039.4:c.757G>A	p.Val253Met	p.V253M	ENST00000262039	NM_002647.2	253	Gtg/Atg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097676	11097676	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	39	643	0	ENST00000344626.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000344626	NM_003072.3	286	Gaa/Taa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210812	36210812	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	142	694	0	ENST00000222270.7:c.563G>C	p.Arg188Pro	p.R188P	ENST00000222270	NM_014727.1	188	cGg/cCg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99162431	99162431	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	34	277	0	ENST00000074304.5:c.950-1G>T		p.X317_splice	ENST00000074304	NM_001134224.1	317																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212589862	212589862	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	40	341	0	ENST00000342788.4:c.680G>T	p.Ser227Ile	p.S227I	ENST00000342788	NM_005235.2	227	aGt/aTt																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748171	41748171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	24	460	0	ENST00000226382.2:c.598C>T	p.Pro200Ser	p.P200S	ENST00000226382	NM_003924.3	200	Ccc/Tcc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750455	41750455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	29	469	0	ENST00000226382.2:c.173C>A	p.Pro58His	p.P58H	ENST00000226382	NM_003924.3	58	cCt/cAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535442	66535442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	26	544	0	ENST00000273854.3:c.19del	p.Arg7GlyfsTer55	p.R7Gfs*55	ENST00000273854	NM_004439.5	7	Cgg/gg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187530360	187530360	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	22	292	0	ENST00000441802.2:c.10183A>T	p.Thr3395Ser	p.T3395S	ENST00000441802	NM_005245.3	3395	Acc/Tcc																																																																															
TERT	7015	MSKCC	GRCh37	5	1293987	1293987	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	403	807	0	ENST00000310581.5:c.1014G>T	p.Lys338Asn	p.K338N	ENST00000310581	NM_198253.2	338	aaG/aaT																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518069	176518069	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	41	553	0	ENST00000292408.4:c.567G>T	p.Gln189His	p.Q189H	ENST00000292408	NM_213647.1	189	caG/caT																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552985	106552985	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	39	514	0	ENST00000369096.4:c.950G>T	p.Gly317Val	p.G317V	ENST00000369096	NM_001198.3	317	gGg/gTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69031747	69031747	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	23	406	1	ENST00000288368.4:c.3502C>T	p.Gln1168Ter	p.Q1168*	ENST00000288368	NM_024870.2	1168	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047037-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			151	61	353	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0047037-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			723	25	637	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
STK11	6794	MSKCC	GRCh37	19	1222005	1222005	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0047037-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			550	176	803	0	ENST00000326873.7:c.920+1del		p.S307fs	ENST00000326873	NM_000455.4	307	aGc/ac																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134488	2134504	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTGGACGGGGAAAGT	CCCTGGACGGGGAAAGT	A			P-0047037-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	260	1059	0	ENST00000219476.3:c.4265_4281delinsA	p.Thr1422LysfsTer49	p.T1422Kfs*49	ENST00000219476	NM_000548.3	1422	aCCCTGGACGGGGAAAGT/aA																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743577	46743577	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047037-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			831	171	643	0	ENST00000371975.4:c.1958A>G	p.Glu653Gly	p.E653G	ENST00000371975	NM_003579.3	653	gAg/gGg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112101	115112101	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047037-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			953	251	958	0	ENST00000257566.3:c.1639T>A	p.Ser547Thr	p.S547T	ENST00000257566	NM_016569.3	547	Tct/Act																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405830	157405830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047037-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			460	105	426	0	ENST00000346085.5:c.2072G>T	p.Gly691Val	p.G691V	ENST00000346085	NM_020732.3	691	gGa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047640-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	122	702	1	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																															
TP63	8626	MSKCC	GRCh37	3	189612035	189612035	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047640-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			834	87	531	0	ENST00000264731.3:c.1787del	p.Ala596GlyfsTer108	p.A596Gfs*108	ENST00000264731	NM_003722.4	596	gCg/gg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152420005	152420005	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047640-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			697	202	703	0	ENST00000206249.3:c.1692C>G	p.Asp564Glu	p.D564E	ENST00000206249	NM_000125.3	564	gaC/gaG																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374293	138374293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	1238	502	0	ENST00000289153.2:c.3151G>A	p.Glu1051Lys	p.E1051K	ENST00000289153	NM_006219.2	1051	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0047982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	524	684	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435234	110435234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	161	513	1	ENST00000375856.3:c.3167C>T	p.Pro1056Leu	p.P1056L	ENST00000375856	NM_003749.2	1056	cCg/cTg																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156732	20156732	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	235	388	0	ENST00000379607.5:c.25G>C	p.Gly9Arg	p.G9R	ENST00000379607	NM_001412.3	9	Ggt/Cgt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	248	553	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120459100	120459100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	153	645	0	ENST00000256646.2:c.6245C>G	p.Pro2082Arg	p.P2082R	ENST00000256646	NM_024408.3	2082	cCt/cGt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265112	10265112	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	125	676	0	ENST00000340748.4:c.1828del	p.Glu610ArgfsTer87	p.E610Rfs*87	ENST00000340748		610	Gag/ag																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502725	149502725	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	144	806	0	ENST00000261799.4:c.2063A>G	p.Asp688Gly	p.D688G	ENST00000261799	NM_002609.3	688	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0048055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	232	595	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0048055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	221	349	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0048055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	89	262	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943658	9943658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	222	579	0	ENST00000330684.3:c.1283C>T	p.Thr428Met	p.T428M	ENST00000330684	NM_001134407.1	428	aCg/aTg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26970440	26970441	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	30	133	0	ENST00000381527.3:c.815dup	p.Met273AspfsTer3	p.M273Dfs*3	ENST00000381527	NM_001260.1	270	ata/atAa																																																																															
APC	324	MSKCC	GRCh37	5	112111380	112111381	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	49	190	0	ENST00000257430.4:c.478dup	p.Ala160GlyfsTer8	p.A160Gfs*8	ENST00000257430	NM_000038.5	159	-/G																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0048059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	124	447	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0048062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	74	200	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020733	37020733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	206	509	1	ENST00000358127.4:c.112C>T	p.Arg38Cys	p.R38C	ENST00000358127	NM_001280556.1	38	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0048062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	225	516	0	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
NFKBIA	4792	MSKCC	GRCh37	14	35872436	35872436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	237	706	2	ENST00000216797.5:c.467G>A	p.Cys156Tyr	p.C156Y	ENST00000216797	NM_020529.2	156	tGc/tAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2135025	2135025	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0048062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	211	774	0	ENST00000219476.3:c.4567G>T	p.Glu1523Ter	p.E1523*	ENST00000219476	NM_000548.3	1523	Gag/Tag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492739	56492739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	124	471	0	ENST00000407977.2:c.200G>T	p.Gly67Val	p.G67V	ENST00000407977		67	gGt/gTt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395242	139395242	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	287	976	0	ENST00000277541.6:c.5696A>G	p.Asn1899Ser	p.N1899S	ENST00000277541	NM_017617.3	1899	aAc/aGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	37	296	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992414	72992414	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62620235		P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	42	735	0	ENST00000268489.5:c.1631C>T	p.Ser544Leu	p.S544L	ENST00000268489	NM_006885.3	544	tCg/tTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481403	+	missense_variant	Missense_Mutation	DNP	CC	CC	GA			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	16	244	0	ENST00000288602.6:c.1405_1406delinsTC	p.Gly469Ser	p.G469S	ENST00000288602	NM_004333.4	469	GGa/TCa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467800	66467800	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	21	221	0	ENST00000273854.3:c.469G>C	p.Glu157Gln	p.E157Q	ENST00000273854	NM_004439.5	157	Gag/Cag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66242716	66242716	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	16	216	0	ENST00000273854.3:c.1856G>T	p.Trp619Leu	p.W619L	ENST00000273854	NM_004439.5	619	tGg/tTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259862	16259862	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	19	410	0	ENST00000375759.3:c.7127A>G	p.Gln2376Arg	p.Q2376R	ENST00000375759	NM_015001.2	2376	cAg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574011	7574012	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CGAAGCGCTCACGCCCACGGATCTGCAGCAACAGAGGAGGGGGAGA			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	15	706	0	ENST00000269305.4:c.994-24_1015dup	p.Glu339ValfsTer13	p.E339Vfs*13	ENST00000269305	NM_001126112.2	339	gag/gTCTCCCCCTCCTCTGTTGCTGCAGATCCGTGGGCGTGAGCGCTTCGag																																																																															
NF1	4763	MSKCC	GRCh37	17	29546078	29546079	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	32	356	0	ENST00000358273.4:c.1583_1584delinsTT	p.Gly528Val	p.G528V	ENST00000358273	NM_001042492.2	528	gGG/gTT																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10264980	10264980	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	34	326	0	ENST00000340748.4:c.1960G>T	p.Gly654Cys	p.G654C	ENST00000340748		654	Ggc/Tgc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982461	25982461	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	20	226	0	ENST00000435504.4:c.829A>T	p.Ile277Phe	p.I277F	ENST00000435504		277	Att/Ttt																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169977798	169977798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	39	256	1	ENST00000295797.4:c.265G>T	p.Ala89Ser	p.A89S	ENST00000295797	NM_002740.5	89	Gcc/Tcc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729708	41729708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	28	532	0	ENST00000242208.4:c.821G>T	p.Gly274Val	p.G274V	ENST00000242208	NM_002192.2	274	gGa/gTa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513009	106513009	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	23	172	0	ENST00000359195.3:c.2023A>T	p.Ser675Cys	p.S675C	ENST00000359195	NM_002649.2	675	Agc/Tgc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981635	70981635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	27	890	0	ENST00000276594.2:c.461C>A	p.Pro154His	p.P154H	ENST00000276594	NM_024504.3	154	cCt/cAt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209735	98209735	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	41	656	0	ENST00000331920.6:c.3805-2A>C		p.X1269_splice	ENST00000331920	NM_000264.3	1269																																																																																
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0048067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	136	588	3	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0048067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	58	302	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0048067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	32	147	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0048067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	57	315	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32819964	32819964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	259	710	0	ENST00000354258.4:c.946G>A	p.Val316Met	p.V316M	ENST00000354258	NM_000593.5	316	Gtg/Atg																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64288905	64288905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	99	454	0	ENST00000370651.3:c.301G>A	p.Ala101Thr	p.A101T	ENST00000370651	NM_003463.4	101	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	105	705	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173600	112173600	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	54	304	0	ENST00000257430.4:c.2309C>G	p.Ser770Ter	p.S770*	ENST00000257430	NM_000038.5	770	tCa/tGa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162742000	162742000	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	32	480	0	ENST00000367921.3:c.1691C>G	p.Thr564Ser	p.T564S	ENST00000367921	NM_006182.2	564	aCt/aGt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912140	114912141	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0046631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	54	565	0	ENST00000543371.1:c.1210_1211delinsT	p.Arg404Ter	p.R404*	ENST00000543371	NM_001198531.1	404	CGg/Tg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0047796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	53	246	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367867	15367867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	79	890	1	ENST00000263377.2:c.1459G>A	p.Asp487Asn	p.D487N	ENST00000263377	NM_058243.2	487	Gac/Aac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912670	32912670	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	67	354	0	ENST00000380152.3:c.4178C>T	p.Ala1393Val	p.A1393V	ENST00000380152		1393	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175349	112175350	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0047796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	70	168	0	ENST00000257430.4:c.4058_4059delAA	p.Glu1353ValfsTer21	p.E1353Vfs*21	ENST00000257430	NM_000038.5	1353	gAA/g																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575448	64575449	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0047796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	114	794	0	ENST00000337652.1:c.583_584delinsTT	p.Gly195Leu	p.G195L	ENST00000337652	NM_130803.2	195	GGg/TTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578243	7578243	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	331	631	0	ENST00000269305.4:c.606del	p.Val203TrpfsTer44	p.V203Wfs*44	ENST00000269305	NM_001126112.2	202	cgT/cg																																																																															
HGF	3082	MSKCC	GRCh37	7	81381475	81381475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	44	298	0	ENST00000222390.5:c.586G>T	p.Val196Leu	p.V196L	ENST00000222390	NM_000601.4	196	Gta/Tta																																																																															
AR	367	MSKCC	GRCh37	X	66931382	66931382	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	29	299	0	ENST00000374690.3:c.2024T>C	p.Leu675Pro	p.L675P	ENST00000374690	NM_000044.3	675	cTg/cCg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881002	37881003	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTCCCCA			P-0047800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	395	893	0	ENST00000269571.5:c.2332_2340dupGGCTCCCCA	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	-/GGCTCCCCA																																																																															
RB1	5925	MSKCC	GRCh37	13	49030378	49030378	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0047800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	44	279	0	ENST00000267163.4:c.1853C>G	p.Ser618Ter	p.S618*	ENST00000267163	NM_000321.2	618	tCa/tGa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097775	8097776	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	313	817	0	ENST00000346208.3:c.158dup	p.Asp54ArgfsTer249	p.D54Rfs*249	ENST00000346208		53	atc/aTtc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120756	115120756	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	321	770	0	ENST00000257566.3:c.250C>T	p.Gln84Ter	p.Q84*	ENST00000257566	NM_016569.3	84	Cag/Tag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060881	38060881	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	322	755	0	ENST00000250448.2:c.1108G>T	p.Val370Leu	p.V370L	ENST00000250448	NM_004496.3	370	Gtg/Ttg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060979	38061200	+	inframe_deletion	In_Frame_Del	DEL	TGGTCCAGAGTCTGGGGGCTGGCGGCGGGCCCGGGGGCCGGCGCGCCCTCTAGCTGGCCGGTCTTCCCGTGCACACCCCGATGGAGGGGCGAGTCGGCGCTGGGGTTAGAGGCGCCAGAGGGGTCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTC	TGGTCCAGAGTCTGGGGGCTGGCGGCGGGCCCGGGGGCCGGCGCGCCCTCTAGCTGGCCGGTCTTCCCGTGCACACCCCGATGGAGGGGCGAGTCGGCGCTGGGGTTAGAGGCGCCAGAGGGGTCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTC	-			P-0047800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	430	575	0	ENST00000250448.2:c.789_1010del	p.Gln263_Asp336del	p.Q263_D336del	ENST00000250448	NM_004496.3	263	caGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGCGGCCCTGAGAGCCGCAAGGACCCCTCTGGCGCCTCTAACCCCAGCGCCGACTCGCCCCTCCATCGGGGTGTGCACGGGAAGACCGGCCAGCTAGAGGGCGCGCCGGCCCCCGGGCCCGCCGCCAGCCCCCAGACTCTGGACCAc/cac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38064133	38064133	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	226	428	0	ENST00000250448.2:c.45G>C	p.Trp15Cys	p.W15C	ENST00000250448	NM_004496.3	15	tgG/tgC																																																																															
CDH1	999	MSKCC	GRCh37	16	68849434	68849434	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	256	577	0	ENST00000261769.5:c.1338del	p.Lys447SerfsTer8	p.K447Sfs*8	ENST00000261769	NM_004360.3	446	gCc/gc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46266470	46266470	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	136	378	2	ENST00000371998.3:c.2455T>C	p.Ser819Pro	p.S819P	ENST00000371998		819	Tca/Cca																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271395	26271395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	239	566	0	ENST00000305910.3:c.218G>T	p.Arg73Leu	p.R73L	ENST00000305910	NM_003534.2	73	cGa/cTa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412704	63412704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	235	567	0	ENST00000330258.3:c.463G>A	p.Val155Met	p.V155M	ENST00000330258	NM_152424.3	155	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576886	7576889	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	TTA			P-0047800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	278	704	1	ENST00000269305.4:c.957_960delinsTAA	p.Lys319AsnfsTer26	p.K319Nfs*26	ENST00000269305	NM_001126112.2	319	aaGAAG/aaTAA																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968202	68968202	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	159	480	0	ENST00000288368.4:c.1231C>A	p.Leu411Ile	p.L411I	ENST00000288368	NM_024870.2	411	Ctt/Att																																																																															
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0047802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	148	619	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30133048	30133048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	82	354	0	ENST00000331968.5:c.553C>T	p.His185Tyr	p.H185Y	ENST00000331968	NM_002742.2	185	Cat/Tat																																																																															
PREX2	80243	MSKCC	GRCh37	8	68982094	68982094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	86	453	0	ENST00000288368.4:c.1468C>T	p.His490Tyr	p.H490Y	ENST00000288368	NM_024870.2	490	Cat/Tat																																																																															
NF1	4763	MSKCC	GRCh37	17	29661913	29661913	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	86	392	0	ENST00000358273.4:c.5871del	p.Arg1958ValfsTer21	p.R1958Vfs*21	ENST00000358273	NM_001042492.2	1957	gTt/gt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16247364	16247364	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0047806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	75	177	0	ENST00000375759.3:c.1636-1G>A		p.X546_splice	ENST00000375759	NM_015001.2	546																																																																																
TP53BP1	7158	MSKCC	GRCh37	15	43749146	43749146	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	298	728	0	ENST00000382044.4:c.1660G>T	p.Glu554Ter	p.E554*	ENST00000382044	NM_001141980.1	554	Gaa/Taa																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538829	23538831	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0047806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	246	514	0	ENST00000380871.4:c.608_610del	p.Glu203del	p.E203del	ENST00000380871	NM_006167.3	203	gAGGcc/gcc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0047938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	24	463	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0047938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	26	221	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
CDH1	999	MSKCC	GRCh37	16	68855984	68855984	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	39	376	0	ENST00000261769.5:c.1792C>T	p.Arg598Ter	p.R598*	ENST00000261769	NM_004360.3	598	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581219	48581219	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	16	307	0	ENST00000342988.3:c.523G>T	p.Glu175Ter	p.E175*	ENST00000342988	NM_005359.5	175	Gaa/Taa																																																																															
KDR	3791	MSKCC	GRCh37	4	55976711	55976711	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	29	337	0	ENST00000263923.4:c.1114G>C	p.Glu372Gln	p.E372Q	ENST00000263923	NM_002253.2	372	Gag/Cag																																																																															
RECQL	5965	MSKCC	GRCh37	12	21643241	21643241	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	47	416	0	ENST00000421138.2:c.286C>T	p.Gln96Ter	p.Q96*	ENST00000421138		96	Cag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112641	115112641	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0047938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	116	562	0	ENST00000257566.3:c.1100-1G>C		p.X367_splice	ENST00000257566	NM_016569.3	367																																																																																
POLD1	5424	MSKCC	GRCh37	19	50918132	50918132	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148176230		P-0047938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	49	764	1	ENST00000440232.2:c.2449C>T	p.Arg817Trp	p.R817W	ENST00000440232	NM_002691.3	817	Cgg/Tgg																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997856	149997856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	28	403	0	ENST00000253339.5:c.2611G>A	p.Asp871Asn	p.D871N	ENST00000253339		871	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0047942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	61	494	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794860	242794860	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	24	650	0	ENST00000334409.5:c.349G>C	p.Asp117His	p.D117H	ENST00000334409	NM_005018.2	117	Gac/Cac																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0047960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	284	634	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
MED12	9968	MSKCC	GRCh37	X	70348536	70348536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	114	557	0	ENST00000374080.3:c.3443G>A	p.Arg1148His	p.R1148H	ENST00000374080		1148	cGc/cAc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89831342	89831342	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	56	628	0	ENST00000389301.3:c.2734A>G	p.Thr912Ala	p.T912A	ENST00000389301	NM_000135.2	912	Aca/Gca																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196162	138196162	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	95	273	0	ENST00000237289.4:c.476A>C	p.Tyr159Ser	p.Y159S	ENST00000237289	NM_001270507.1	159	tAt/tCt																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233264	69233264	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	110	251	0	ENST00000462284.1:c.1129A>G	p.Arg377Gly	p.R377G	ENST00000462284	NM_002392.5	377	Aga/Gga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858774	9858774	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	220	241	0	ENST00000330684.3:c.2627T>A	p.Ile876Asn	p.I876N	ENST00000330684	NM_001134407.1	876	aTt/aAt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662229	227662229	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	73	907	0	ENST00000305123.5:c.1226C>A	p.Pro409Gln	p.P409Q	ENST00000305123	NM_005544.2	409	cCa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	146	294	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0047975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	214	398	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175548	112175548	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	89	245	0	ENST00000257430.4:c.4260delC	p.Ser1421ValfsTer52	p.S1421Vfs*52	ENST00000257430	NM_000038.5	1419	agC/ag																																																																															
REL	5966	MSKCC	GRCh37	2	61145732	61145732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	120	200	0	ENST00000295025.8:c.844G>A	p.Asp282Asn	p.D282N	ENST00000295025	NM_002908.2	282	Gat/Aat																																																																															
BRAF	673	MSKCC	GRCh37	7	140481423	140481423	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	145	272	0	ENST00000288602.6:c.1385G>T	p.Arg462Ile	p.R462I	ENST00000288602	NM_004333.4	462	aGa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0047978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	101	650	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519947		P-0047978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	63	634	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733279	40733279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201275244		P-0047978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	124	401	0	ENST00000373198.4:c.3527G>A	p.Arg1176His	p.R1176H	ENST00000373198	NM_133170.3	1176	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	25	332	0	ENST00000342988.3:c.1055G>T	p.Gly352Val	p.G352V	ENST00000342988	NM_005359.5	352	gGa/gTa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117900	70117900	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	98	569	0	ENST00000245479.2:c.368T>A	p.Leu123His	p.L123H	ENST00000245479	NM_000346.3	123	cTc/cAc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25976510	25976510	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0047978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	19	201	1	ENST00000435504.4:c.1037-2A>G		p.X346_splice	ENST00000435504		346																																																																																
ASXL2	55252	MSKCC	GRCh37	2	25991627	25991628	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0047978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	40	249	0	ENST00000435504.4:c.614_615del	p.Ser205CysfsTer14	p.S205Cfs*14	ENST00000435504		205	tCT/t																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151856071	151856071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	31	327	0	ENST00000262189.6:c.11547G>T	p.Gln3849His	p.Q3849H	ENST00000262189	NM_170606.2	3849	caG/caT																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047234-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			382	106	378	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3790494	3790494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047234-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			636	52	547	1	ENST00000262367.5:c.4039C>T	p.Arg1347Trp	p.R1347W	ENST00000262367	NM_004380.2	1347	Cgg/Tgg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270108	66270108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756653935		P-0047234-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			296	99	291	1	ENST00000273854.3:c.1774G>A	p.Val592Ile	p.V592I	ENST00000273854	NM_004439.5	592	Gtc/Atc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922182	39922182	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047234-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			316	91	273	0	ENST00000378444.4:c.3990del	p.Asp1331MetfsTer38	p.D1331Mfs*38	ENST00000378444	NM_001123385.1	1330	acA/ac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44910970	44910971	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047234-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			224	14	93	0	ENST00000377967.4:c.675dup	p.Glu226ArgfsTer4	p.E226Rfs*4	ENST00000377967	NM_021140.2	224	gca/gcAa																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650859	48650859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047234-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	27	347	0	ENST00000376670.3:c.728G>A	p.Arg243Gln	p.R243Q	ENST00000376670	NM_002049.3	243	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0047879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	64	607	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225339072	225339072	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	38	249	0	ENST00000264414.4:c.2197C>T	p.Arg733Ter	p.R733*	ENST00000264414	NM_003590.4	733	Cga/Tga																																																																															
PARP1	142	MSKCC	GRCh37	1	226552821	226552821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182639036		P-0047879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	18	483	0	ENST00000366794.5:c.2540G>A	p.Arg847His	p.R847H	ENST00000366794	NM_001618.3	847	cGt/cAt																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123310913	123310913	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	13	542	0	ENST00000358487.5:c.515C>A	p.Ala172Asp	p.A172D	ENST00000358487	NM_000141.4	172	gCc/gAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545650	106545650	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	33	366	0	ENST00000359195.3:c.3127A>C	p.Thr1043Pro	p.T1043P	ENST00000359195	NM_002649.2	1043	Aca/Cca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845262	151845262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	132	408	0	ENST00000262189.6:c.13750C>T	p.Arg4584Trp	p.R4584W	ENST00000262189	NM_170606.2	4584	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	19	393	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0047884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	15	320	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323193	31323193	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	63	724	0	ENST00000412585.2:c.796C>T	p.Gln266Ter	p.Q266*	ENST00000412585	NM_005514.6	266	Cag/Tag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858615	57858615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	73	643	0	ENST00000228682.2:c.353G>T	p.Gly118Val	p.G118V	ENST00000228682	NM_005269.2	118	gGa/gTa																																																																															
POLE	5426	MSKCC	GRCh37	12	133219902	133219902	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	62	733	0	ENST00000320574.5:c.4459A>G	p.Ile1487Val	p.I1487V	ENST00000320574	NM_006231.2	1487	Atc/Gtc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347746	347746	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	71	949	1	ENST00000262320.3:c.1760A>T	p.Asn587Ile	p.N587I	ENST00000262320	NM_003502.3	587	aAc/aTc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819300	3819300	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	79	688	0	ENST00000262367.5:c.2935G>T	p.Ala979Ser	p.A979S	ENST00000262367	NM_004380.2	979	Gcc/Tcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211894	36211894	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	85	903	0	ENST00000222270.7:c.1645G>T	p.Glu549Ter	p.E549*	ENST00000222270	NM_014727.1	549	Gaa/Taa																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928652	49928652	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	76	829	0	ENST00000296474.3:c.3622G>C	p.Asp1208His	p.D1208H	ENST00000296474	NM_002447.2	1208	Gac/Cac																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508080	106508080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	25	287	0	ENST00000359195.3:c.74C>T	p.Pro25Leu	p.P25L	ENST00000359195	NM_002649.2	25	cCg/cTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68999959	68999959	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0047884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	18	480	3	ENST00000288368.4:c.2028G>T	p.Glu676Asp	p.E676D	ENST00000288368	NM_024870.2	676	gaG/gaT																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300960	137300960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	65	732	0	ENST00000481739.1:c.605G>T	p.Arg202Leu	p.R202L	ENST00000481739	NM_002957.4	202	cGg/cTg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36941125	36941125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	216	560	0	ENST00000361632.4:c.214G>A	p.Gly72Arg	p.G72R	ENST00000361632		72	Ggg/Agg																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	148	304	7	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843626	156843626	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	65	606	0	ENST00000524377.1:c.1052C>A	p.Pro351His	p.P351H	ENST00000524377	NM_002529.3	351	cCc/cAc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745569	162745569	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	100	402	0	ENST00000367921.3:c.1984C>A	p.Leu662Ile	p.L662I	ENST00000367921	NM_006182.2	662	Ctc/Atc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111171	193111171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	83	238	0	ENST00000367435.3:c.704C>T	p.Thr235Ile	p.T235I	ENST00000367435	NM_024529.4	235	aCa/aTa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983031	201983031	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	194	518	0	ENST00000359651.3:c.881del	p.Lys294SerfsTer31	p.K294Sfs*31	ENST00000359651		294	Aag/ag																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716118	243716118	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	42	414	0	ENST00000263826.5:c.1076T>C	p.Leu359Ser	p.L359S	ENST00000263826	NM_005465.4	359	tTa/tCa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	142	331	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
HRAS	3265	MSKCC	GRCh37	11	533536	533536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	248	629	0	ENST00000311189.7:c.367C>T	p.Arg123Cys	p.R123C	ENST00000311189		123	Cgc/Tgc																																																																															
CCND1	595	MSKCC	GRCh37	11	69462801	69462801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	155	516	1	ENST00000227507.2:c.614C>T	p.Ala205Val	p.A205V	ENST00000227507	NM_053056.2	205	gCg/gTg																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514265	69514265	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	161	573	0	ENST00000294312.3:c.416A>G	p.His139Arg	p.H139R	ENST00000294312	NM_005117.2	139	cAc/cGc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	150	461	5	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	29	301	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	104	298	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434005	49434005	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	256	704	0	ENST00000301067.7:c.7548del	p.Asn2517IlefsTer26	p.N2517Ifs*26	ENST00000301067	NM_003482.3	2516	ccC/cc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856521	111856521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	149	279	0	ENST00000341259.2:c.572C>T	p.Pro191Leu	p.P191L	ENST00000341259	NM_005475.2	191	cCg/cTg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562397	21562397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	45	558	0	ENST00000382592.4:c.1522G>T	p.Gly508Cys	p.G508C	ENST00000382592	NM_014572.2	508	Ggc/Tgc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	16	254	0	ENST00000380152.3:c.5351delA	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954272	32954273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs886038189		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	88	313	0	ENST00000380152.3:c.9253dup	p.Thr3085AsnfsTer26	p.T3085Nfs*26	ENST00000380152		3082	-/A																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514050	103514050	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	51	248	0	ENST00000355739.4:c.866A>G	p.Tyr289Cys	p.Y289C	ENST00000355739	NM_000123.3	289	tAc/tGc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435597	110435597	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762535630		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	165	331	0	ENST00000375856.3:c.2804C>T	p.Ala935Val	p.A935V	ENST00000375856	NM_003749.2	935	gCg/gTg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	25	412	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2224294	2224294	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	160	671	0	ENST00000326181.6:c.1306G>T	p.Glu436Ter	p.E436*	ENST00000326181	NM_032271.2	436	Gag/Tag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781324	3781326	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	295	730	0	ENST00000262367.5:c.5039_5041delCCT	p.Ser1680del	p.S1680del	ENST00000262367	NM_004380.2	1680	tCCTtg/ttg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50788275	50788275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	133	440	0	ENST00000398568.2:c.853C>T	p.Leu285Phe	p.L285F	ENST00000398568	NM_001042412.1	285	Ctt/Ttt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991757	72991758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	94	435	1	ENST00000268489.5:c.2287dupG	p.Glu763GlyfsTer26	p.E763Gfs*26	ENST00000268489	NM_006885.3	763	gag/gGag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89809209	89809209	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	175	384	0	ENST00000389301.3:c.3764A>T	p.Glu1255Val	p.E1255V	ENST00000389301	NM_000135.2	1255	gAg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	254	599	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	124	473	6	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
NF1	4763	MSKCC	GRCh37	17	29541593	29541593	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	17	203	0	ENST00000358273.4:c.1517T>G	p.Leu506Arg	p.L506R	ENST00000358273	NM_001042492.2	506	cTc/cGc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	238	600	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63531841	63531841	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	133	388	0	ENST00000307078.5:c.2142-2A>G		p.X714_splice	ENST00000307078	NM_004655.3	714																																																																																
RPTOR	57521	MSKCC	GRCh37	17	78899179	78899179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760865448		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	106	369	0	ENST00000306801.3:c.2818G>A	p.Asp940Asn	p.D940N	ENST00000306801	NM_020761.2	940	Gac/Aac																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78934001	78934001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	181	484	0	ENST00000306801.3:c.3601G>A	p.Glu1201Lys	p.E1201K	ENST00000306801	NM_020761.2	1201	Gaa/Aaa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	171	531	2	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276289	15276289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	224	614	0	ENST00000263388.2:c.5705G>A	p.Arg1902His	p.R1902H	ENST00000263388	NM_000435.2	1902	cGc/cAc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273010	18273010	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	59	469	0	ENST00000222254.8:c.902-2A>G		p.X301_splice	ENST00000222254	NM_005027.3	301																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36221698	36221698	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	195	642	0	ENST00000222270.7:c.5367G>T	p.Arg1789Ser	p.R1789S	ENST00000222270	NM_014727.1	1789	agG/agT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	152	691	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
AXL	558	MSKCC	GRCh37	19	41762509	41762509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	40	300	0	ENST00000301178.4:c.2189G>A	p.Ser730Asn	p.S730N	ENST00000301178	NM_021913.4	730	aGc/aAc																																																																															
CIC	23152	MSKCC	GRCh37	19	42793480	42793480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	50	547	0	ENST00000575354.2:c.1282C>T	p.Arg428Cys	p.R428C	ENST00000575354	NM_015125.3	428	Cgt/Tgt																																																																															
CIC	23152	MSKCC	GRCh37	19	42795712	42795715	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CAGT	CAGT	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	273	637	0	ENST00000575354.2:c.2705_2708del	p.Ser902PhefsTer21	p.S902Ffs*21	ENST00000575354	NM_015125.3	901	CAGTca/ca																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902258	50902263	+	inframe_deletion	In_Frame_Del	DEL	GCAGGA	GCAGGA	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	106	632	0	ENST00000440232.2:c.157_162del	p.Gln53_Glu54del	p.Q53_E54del	ENST00000440232	NM_002691.3	50	ctGCAGGAg/ctg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910268	50910268	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	144	528	0	ENST00000440232.2:c.1523T>C	p.Leu508Pro	p.L508P	ENST00000440232	NM_002691.3	508	cTg/cCg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190738224	190738224	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	36	109	0	ENST00000441310.2:c.2476G>A	p.Val826Ile	p.V826I	ENST00000441310	NM_000534.4	826	Gtt/Att																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713861	30713861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	216	481	0	ENST00000359013.4:c.1261T>C	p.Cys421Arg	p.C421R	ENST00000359013	NM_001024847.2	421	Tgt/Cgt																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182341	38182341	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	70	324	0	ENST00000396334.3:c.775+2T>C		p.X259_splice	ENST00000396334	NM_002468.4	259																																																																																
MITF	4286	MSKCC	GRCh37	3	69987137	69987137	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	146	430	0	ENST00000352241.4:c.522del	p.Ser175AlafsTer38	p.S175Afs*38	ENST00000352241	NM_198159.2	173	ccG/cc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	134	438	3	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	59	228	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	54	226	0	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at																																																																															
TET2	54790	MSKCC	GRCh37	4	106156652	106156652	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	26	266	1	ENST00000380013.4:c.1557delT	p.Phe519LeufsTer14	p.F519Lfs*14	ENST00000380013	NM_001127208.2	518	aTt/at																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247373	153247373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	77	200	0	ENST00000281708.4:c.1429G>A	p.Gly477Ser	p.G477S	ENST00000281708	NM_033632.3	477	Ggt/Agt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541228	187541228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	68	302	0	ENST00000441802.2:c.6512C>T	p.Pro2171Leu	p.P2171L	ENST00000441802	NM_005245.3	2171	cCg/cTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630629	187630629	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	171	432	1	ENST00000441802.2:c.353T>A	p.Leu118Ter	p.L118*	ENST00000441802	NM_005245.3	118	tTg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112116499	112116499	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	38	197	0	ENST00000257430.4:c.544A>G	p.Thr182Ala	p.T182A	ENST00000257430	NM_000038.5	182	Aca/Gca																																																																															
APC	324	MSKCC	GRCh37	5	112170780	112170783	+	frameshift_variant	Frame_Shift_Del	DEL	ACAA	ACAA	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	136	509	0	ENST00000257430.4:c.1879_1882del	p.Asn627LeufsTer2	p.N627Lfs*2	ENST00000257430	NM_000038.5	626	ACAAac/ac																																																																															
APC	324	MSKCC	GRCh37	5	112173785	112173785	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	75	257	0	ENST00000257430.4:c.2496del	p.Ser833AlafsTer9	p.S833Afs*9	ENST00000257430	NM_000038.5	832	Ccc/cc																																																																															
APC	324	MSKCC	GRCh37	5	112178262	112178262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	70	289	0	ENST00000257430.4:c.6971C>T	p.Pro2324Leu	p.P2324L	ENST00000257430	NM_000038.5	2324	cCt/cTt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449859	149449859	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	196	616	0	ENST00000286301.3:c.1205del	p.Pro402GlnfsTer3	p.P402Qfs*3	ENST00000286301	NM_005211.3	402	cCa/ca																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679442	30679442	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	125	394	0	ENST00000376406.3:c.2128+2T>C		p.X710_splice	ENST00000376406	NM_014641.2	710																																																																																
TAP2	6891	MSKCC	GRCh37	6	32798511	32798511	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	58	549	0	ENST00000374899.4:c.1345C>T	p.Arg449Ter	p.R449*	ENST00000374899	NM_018833.2	449	Cga/Tga																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805789	32805790	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	61	595	0	ENST00000374899.4:c.221_222insA	p.Leu75ProfsTer92	p.L75Pfs*92	ENST00000374899	NM_018833.2	74	ccc/ccAc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609768	117609768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	107	439	0	ENST00000368508.3:c.6931G>A	p.Ala2311Thr	p.A2311T	ENST00000368508	NM_002944.2	2311	Gca/Aca																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199687	138199687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	116	425	2	ENST00000237289.4:c.1105G>A	p.Ala369Thr	p.A369T	ENST00000237289	NM_001270507.1	369	Gcc/Acc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450357	50450357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	175	475	0	ENST00000331340.3:c.541G>A	p.Ala181Thr	p.A181T	ENST00000331340	NM_006060.4	181	Gcc/Acc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468270	50468270	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	124	573	1	ENST00000331340.3:c.1505G>T	p.Arg502Leu	p.R502L	ENST00000331340	NM_006060.4	502	cGg/cTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55233037	55233037	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1477025000		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	195	409	0	ENST00000275493.2:c.1787C>T	p.Pro596Leu	p.P596L	ENST00000275493	NM_005228.3	596	cCg/cTg																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	169	650	2	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345759	152345760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	48	180	0	ENST00000359321.1:c.810dup	p.Ile271TyrfsTer8	p.I271Yfs*8	ENST00000359321	NM_005431.1	270	-/T																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152357857	152357857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	82	278	4	ENST00000359321.1:c.50G>A	p.Arg17Gln	p.R17Q	ENST00000359321	NM_005431.1	17	cGa/cAa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900210	101900210	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	124	265	0	ENST00000374994.4:c.644G>C	p.Arg215Pro	p.R215P	ENST00000374994	NM_004612.2	215	cGa/cCa																																																																															
MED12	9968	MSKCC	GRCh37	X	70354253	70354253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	164	292	1	ENST00000374080.3:c.4664C>T	p.Thr1555Met	p.T1555M	ENST00000374080		1555	aCg/aTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	42	161	2	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0047887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	20	380	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161674	56161674	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	23	316	0	ENST00000399503.3:c.1173del	p.Lys391AsnfsTer45	p.K391Nfs*45	ENST00000399503	NM_005921.1	391	Aaa/aa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189432	56189432	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0047887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	28	394	0	ENST00000399503.3:c.4464T>A	p.Cys1488Ter	p.C1488*	ENST00000399503	NM_005921.1	1488	tgT/tgA																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115871	8115872	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0047891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	223	425	0	ENST00000346208.3:c.1219_1220delTC	p.Ser407AlafsTer99	p.S407Afs*99	ENST00000346208		406	aTC/a																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589696	69589696	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	97	136	1	ENST00000168712.1:c.157C>A	p.Leu53Ile	p.L53I	ENST00000168712	NM_002007.2	53	Ctc/Atc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66774150	66774150	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	65	727	0	ENST00000307102.5:c.626T>G	p.Phe209Cys	p.F209C	ENST00000307102	NM_002755.3	209	tTt/tGt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032550	12032551	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	159	310	0	ENST00000353533.5:c.987dup	p.Asn330Ter	p.N330*	ENST00000353533	NM_003010.3	329	agt/agTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	116	285	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	125	397	1	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc																																																																															
PARP1	142	MSKCC	GRCh37	1	226578136	226578136	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	86	338	0	ENST00000366794.5:c.592C>T	p.Gln198Ter	p.Q198*	ENST00000366794	NM_001618.3	198	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1207084	1207084	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	124	545	0	ENST00000326873.7:c.172G>C	p.Gly58Arg	p.G58R	ENST00000326873	NM_000455.4	58	Ggc/Cgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214386	36214386	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1146	92	411	0	ENST00000222270.7:c.3040G>T	p.Glu1014Ter	p.E1014*	ENST00000222270	NM_014727.1	1014	Gaa/Taa																																																																															
RB1	5925	MSKCC	GRCh37	13	49039165	49039202	+	frameshift_variant	Frame_Shift_Del	DEL	AGTATGATTCTATTATAGTATTCTATAACTCGGTCTTC	AGTATGATTCTATTATAGTATTCTATAACTCGGTCTTC	CGTATG			P-0047894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	41	239	0	ENST00000267163.4:c.2243_2280delinsCGTATG	p.Glu748AlafsTer36	p.E748Afs*36	ENST00000267163	NM_000321.2	748	gAGTATGATTCTATTATAGTATTCTATAACTCGGTCTTC/gCGTATG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0047896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	10	328	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78896543	78896543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2108	263	591	0	ENST00000306801.3:c.2540C>T	p.Pro847Leu	p.P847L	ENST00000306801	NM_020761.2	847	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577028	7577053	+	frameshift_variant	Frame_Shift_Del	DEL	TGCTCCCTGGGGGCAGCTCGTGGTGA	TGCTCCCTGGGGGCAGCTCGTGGTGA	-			P-0047896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	26	561	0	ENST00000269305.4:c.885_910del	p.His296Ter	p.H296*	ENST00000269305	NM_001126112.2	295	ccTCACCACGAGCTGCCCCCAGGGAGCAct/ccct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750600586		P-0047906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	161	769	1	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0047906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	169	754	1	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880998	37880998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	215	780	0	ENST00000269571.5:c.2327G>T	p.Gly776Val	p.G776V	ENST00000269571		776	gGt/gTt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437527	56437527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	156	579	0	ENST00000407977.2:c.935G>A	p.Cys312Tyr	p.C312Y	ENST00000407977		312	tGc/tAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604706	48604706	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	36	391	0	ENST00000342988.3:c.1528G>C	p.Gly510Arg	p.G510R	ENST00000342988	NM_005359.5	510	Gga/Cga																																																																															
MST1R	4486	MSKCC	GRCh37	3	49935114	49935114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	46	456	0	ENST00000296474.3:c.1885G>A	p.Val629Met	p.V629M	ENST00000296474	NM_002447.2	629	Gtg/Atg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202435	138202435	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	56	525	0	ENST00000237289.4:c.2352G>T	p.Gln784His	p.Q784H	ENST00000237289	NM_001270507.1	784	caG/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0047907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	34	638	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0010538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	98	279	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0010538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	27	502	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878563	151878563	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	473	538	3	ENST00000262189.6:c.6382C>T	p.Gln2128Ter	p.Q2128*	ENST00000262189	NM_170606.2	2128	Cag/Tag																																																																															
WT1	7490	MSKCC	GRCh37	11	32413597	32413597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	129	357	0	ENST00000332351.3:c.1353C>A	p.Phe451Leu	p.F451L	ENST00000332351	NM_024426.4	451	ttC/ttA																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0010538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	153	509	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
MGA	23269	MSKCC	GRCh37	15	42041349	42041350	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	203	1009	1	ENST00000219905.7:c.5544_5545insA	p.Ser1849IlefsTer2	p.S1849Ifs*2	ENST00000219905	NM_001164273.1	1848	-/A																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604770	48604770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	17	350	0	ENST00000342988.3:c.1594delG	p.Ala532ProfsTer5	p.A532Pfs*5	ENST00000342988	NM_005359.5	531	cGg/cg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49415856	49415858	+	inframe_deletion	In_Frame_Del	DEL	GAT	GAT	-			P-0010538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	179	627	0	ENST00000301067.7:c.16489_16491delATC	p.Ile5497del	p.I5497del	ENST00000301067	NM_003482.3	5497	ATC/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	375	337	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0044889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			420	421	722	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0044889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			252	204	364	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																															
POLE	5426	MSKCC	GRCh37	12	133225652	133225652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			512	313	676	0	ENST00000320574.5:c.4012G>A	p.Glu1338Lys	p.E1338K	ENST00000320574	NM_006231.2	1338	Gag/Aag																																																																															
IRF4	3662	MSKCC	GRCh37	6	393322	393322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			692	137	504	1	ENST00000380956.4:c.170C>T	p.Ala57Val	p.A57V	ENST00000380956	NM_001195286.1	57	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0047704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	106	613	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0047704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	79	248	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572002	64572002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	138	767	0	ENST00000337652.1:c.1652C>T	p.Pro551Leu	p.P551L	ENST00000337652	NM_130803.2	551	cCg/cTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	13	480	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562378	21562378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	248	806	1	ENST00000382592.4:c.1541C>T	p.Pro514Leu	p.P514L	ENST00000382592	NM_014572.2	514	cCg/cTg																																																																															
IRF4	3662	MSKCC	GRCh37	6	397219	397219	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143144957		P-0047704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	66	320	0	ENST00000380956.4:c.604G>A	p.Gly202Ser	p.G202S	ENST00000380956	NM_001195286.1	202	Ggc/Agc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912670	32912670	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	52	275	0	ENST00000380152.3:c.4178C>T	p.Ala1393Val	p.A1393V	ENST00000380152		1393	gCg/gTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910787	114910788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	92	410	0	ENST00000543371.1:c.907dup	p.Thr303AsnfsTer25	p.T303Nfs*25	ENST00000543371	NM_001198531.1	302	-/A																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	52	303	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78433847	78433848	+	splice_donor_variant	Splice_Site	DEL	AC	AC	-			P-0047710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	31	231	1	ENST00000370768.2:c.250+1_250+2del		p.X84_splice	ENST00000370768	NM_003902.3	84																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27059242	27059242	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	87	406	0	ENST00000324856.7:c.1879del	p.Asp627IlefsTer2	p.D627Ifs*2	ENST00000324856	NM_006015.4	627	Gat/at																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608248	28608248	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	72	412	2	ENST00000241453.7:c.1808G>A	p.Trp603Ter	p.W603*	ENST00000241453	NM_004119.2	603	tGg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579343	7579346	+	frameshift_variant	Frame_Shift_Del	DEL	TGCA	TGCA	GC			P-0047710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	135	657	0	ENST00000269305.4:c.341_344delinsGC	p.Leu114CysfsTer34	p.L114Cfs*34	ENST00000269305	NM_001126112.2	114	tTGCAt/tGCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	198	259	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220703	1220703	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	202	689	0	ENST00000326873.7:c.721G>C	p.Ala241Pro	p.A241P	ENST00000326873	NM_000455.4	241	Gct/Cct																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073488	8073492	+	frameshift_variant	Frame_Shift_Del	DEL	AACTA	AACTA	-			P-0047712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	129	240	0	ENST00000377482.5:c.1167_1171del	p.Ser390AsnfsTer8	p.S390Nfs*8	ENST00000377482	NM_018948.3	389	gtTAGTTca/gtca																																																																															
MYCL	4610	MSKCC	GRCh37	1	40367541	40367541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	16	37	0	ENST00000397332.2:c.20G>T	p.Cys7Phe	p.C7F	ENST00000397332	NM_001033082.2	7	tGc/tTc																																																																															
ATM	472	MSKCC	GRCh37	11	108121799	108121799	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0047712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	119	200	0	ENST00000278616.4:c.1607+1del		p.C536fs	ENST00000278616	NM_000051.3	536	tGt/tt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265153	46265154	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0047712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	62	216	0	ENST00000371998.3:c.2023_2024delinsCT	p.Gly675Leu	p.G675L	ENST00000371998		675	GGg/CTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	531	184	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G	rs587782272		P-0047714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	403	267	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
ROS1	6098	MSKCC	GRCh37	6	117642499	117642499	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	185	341	0	ENST00000368508.3:c.5700A>G	p.Ile1900Met	p.I1900M	ENST00000368508	NM_002944.2	1900	atA/atG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0047719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	487	432	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0047719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	147	249	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	1316	838	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180039583	180039583	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75614493		P-0047719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	276	784	1	ENST00000261937.6:c.3460G>A	p.Gly1154Arg	p.G1154R	ENST00000261937	NM_182925.4	1154	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112175366	112175366	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0047719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	63	173	0	ENST00000257430.4:c.4075A>T	p.Lys1359Ter	p.K1359*	ENST00000257430	NM_000038.5	1359	Aaa/Taa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546574	9546574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	202	320	0	ENST00000353224.5:c.1448G>A	p.Arg483Gln	p.R483Q	ENST00000353224	NM_177990.2	483	cGg/cAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692965	89692965	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	103	374	1	ENST00000371953.3:c.449A>T	p.Glu150Val	p.E150V	ENST00000371953	NM_000314.4	150	gAg/gTg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30108105	30108105	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	93	321	0	ENST00000331968.5:c.702A>T	p.Lys234Asn	p.K234N	ENST00000331968	NM_002742.2	234	aaA/aaT																																																																															
APC	324	MSKCC	GRCh37	5	112174170	112174170	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	99	212	0	ENST00000257430.4:c.2879C>A	p.Ser960Ter	p.S960*	ENST00000257430	NM_000038.5	960	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0047739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	454	712	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0047739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	80	267	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535403	66535403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	69	469	0	ENST00000273854.3:c.58G>A	p.Asp20Asn	p.D20N	ENST00000273854	NM_004439.5	20	Gac/Aac																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178578	32178578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	207	749	0	ENST00000375023.3:c.2816G>T	p.Cys939Phe	p.C939F	ENST00000375023	NM_004557.3	939	tGc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0047746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	381	984	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871182	12871182	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	129	382	0	ENST00000228872.4:c.410delC	p.Pro137ArgfsTer8	p.P137Rfs*8	ENST00000228872	NM_004064.3	137	Ccg/cg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206651621	206651621	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149987336		P-0047746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	254	1127	1	ENST00000367120.3:c.931G>A	p.Val311Ile	p.V311I	ENST00000367120	NM_014002.3	311	Gtc/Atc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153252022	153252022	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-			P-0047746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	121	424	0	ENST00000281708.4:c.986-2del		p.X329_splice	ENST00000281708	NM_033632.3	329																																																																																
APC	324	MSKCC	GRCh37	5	112174882	112174882	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	58	294	0	ENST00000257430.4:c.3591del	p.Ser1198GlnfsTer67	p.S1198Qfs*67	ENST00000257430	NM_000038.5	1197	ttC/tt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	523	1018	0	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0047753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	82	205	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112137024	112137024	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	54	329	1	ENST00000257430.4:c.778C>T	p.Gln260Ter	p.Q260*	ENST00000257430	NM_000038.5	260	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0043100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			240	80	293	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0043100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			314	66	382	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0043100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			187	61	210	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0043100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			114	33	148	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1627369	1627369	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35936626		P-0043100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	156	672	0	ENST00000344749.5:c.355G>A	p.Gly119Ser	p.G119S	ENST00000344749	NM_001136139.2	119	Ggc/Agc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30314638	30314638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			383	99	496	1	ENST00000262643.3:c.1187C>T	p.Pro396Leu	p.P396L	ENST00000262643	NM_001238.2	396	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577506	7577796	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTCCAGTGTGATGATGGTGAGGATGGGCCTCCGGTTCATGCCGCCCATGCAGGAACTGTTACACATGTAGTTGTAGTGGATGGTGGTACAGTCAGAGCCAACCTAGGAGATAACACAGGCCCAAGATGAGGCCAGTGCGCCTTGGGGAGACCTGTGGCAAGCAGGGGAGGCCTTTTTTTTTTTTTTTTGAGATGGAATCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAAGCTCCACCGCCCAGGTTCACGCCATTCTCCTTCCTCAGC	CTTCCAGTGTGATGATGGTGAGGATGGGCCTCCGGTTCATGCCGCCCATGCAGGAACTGTTACACATGTAGTTGTAGTGGATGGTGGTACAGTCAGAGCCAACCTAGGAGATAACACAGGCCCAAGATGAGGCCAGTGCGCCTTGGGGAGACCTGTGGCAAGCAGGGGAGGCCTTTTTTTTTTTTTTTTGAGATGGAATCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAAGCTCCACCGCCCAGGTTCACGCCATTCTCCTTCCTCAGC	-			P-0043100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			268	27	549	0	ENST00000269305.4:c.673-188_775del		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36212269	36212269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	98	730	0	ENST00000222270.7:c.2020C>T	p.Pro674Ser	p.P674S	ENST00000222270	NM_014727.1	674	Cct/Tct																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157510915	157510915	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0043100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			252	113	370	0	ENST00000346085.5:c.3689+1G>A		p.X1230_splice	ENST00000346085	NM_020732.3	1230																																																																																
STAG2	10735	MSKCC	GRCh37	X	123229269	123229269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			205	53	218	0	ENST00000218089.9:c.3753C>A	p.Phe1251Leu	p.F1251L	ENST00000218089	NM_001042749.1	1251	ttC/ttA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0047758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	412	406	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112915788	112915788	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	137	232	0	ENST00000351677.2:c.1061T>C	p.Val354Ala	p.V354A	ENST00000351677	NM_002834.3	354	gTc/gCc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729909	30729909	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	111	242	0	ENST00000359013.4:c.1505A>G	p.Lys502Arg	p.K502R	ENST00000359013	NM_001024847.2	502	aAg/aGg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32189037	32189037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	176	582	0	ENST00000375023.3:c.517G>A	p.Ala173Thr	p.A173T	ENST00000375023	NM_004557.3	173	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047189-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			166	66	341	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0047189-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			154	29	458	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0047189-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			203	55	709	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0047189-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	53	439	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871640	35871640	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047189-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			191	41	314	0	ENST00000216797.5:c.866A>G	p.Tyr289Cys	p.Y289C	ENST00000216797	NM_020529.2	289	tAt/tGt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417834	138417834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			601	122	386	0	ENST00000289153.2:c.1685G>A	p.Arg562Gln	p.R562Q	ENST00000289153	NM_006219.2	562	cGa/cAa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260900	16260900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	275	401	0	ENST00000375759.3:c.8165C>T	p.Pro2722Leu	p.P2722L	ENST00000375759	NM_015001.2	2722	cCa/cTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	314	399	5	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
JUN	3725	MSKCC	GRCh37	1	59247894	59247894	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	364	688	2	ENST00000371222.2:c.849del	p.Val284Ter	p.V284*	ENST00000371222	NM_002228.3	283	aaA/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	221	264	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	420	314	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948484	71948484	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1358	475	867	0	ENST00000298229.2:c.3201del	p.Ser1068AlafsTer63	p.S1068Afs*63	ENST00000298229	NM_001567.3	1066	Ccc/cc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373709	118373709	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	166	273	0	ENST00000534358.1:c.7102C>A	p.Leu2368Ile	p.L2368I	ENST00000534358	NM_005933.3	2368	Ctc/Atc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	159	305	0	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21628716	21628716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	94	334	0	ENST00000421138.2:c.992C>T	p.Thr331Met	p.T331M	ENST00000421138		331	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	141	299	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243365	46243365	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs76994389		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	80	173	0	ENST00000334344.6:c.1718C>T	p.Thr573Met	p.T573M	ENST00000334344	NM_152641.2	573	aCg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421039	49421039	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs398123721		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	281	443	0	ENST00000301067.7:c.14710C>T	p.Arg4904Ter	p.R4904*	ENST00000301067	NM_003482.3	4904	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434829	49434829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1217	497	772	1	ENST00000301067.7:c.6724G>A	p.Asp2242Asn	p.D2242N	ENST00000301067	NM_003482.3	2242	Gac/Aac																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885145	111885145	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	284	491	0	ENST00000341259.2:c.1038delG	p.Leu347CysfsTer26	p.L347Cfs*26	ENST00000341259	NM_005475.2	345	Ggg/gg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112924349	112924349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	363	628	1	ENST00000351677.2:c.1295C>T	p.Pro432Leu	p.P432L	ENST00000351677	NM_002834.3	432	cCt/cTt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549170	21549170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	337	621	1	ENST00000382592.4:c.3106G>A	p.Ala1036Thr	p.A1036T	ENST00000382592	NM_014572.2	1036	Gca/Aca																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562919	21562919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	466	754	0	ENST00000382592.4:c.1000C>T	p.Arg334Cys	p.R334C	ENST00000382592	NM_014572.2	334	Cgc/Tgc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103528182	103528182	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	112	279	0	ENST00000355739.4:c.3490A>G	p.Thr1164Ala	p.T1164A	ENST00000355739	NM_000123.3	1164	Acc/Gcc																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68353863	68353863	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	146	236	0	ENST00000487270.1:c.698A>T	p.Lys233Met	p.K233M	ENST00000487270	NM_133509.3	233	aAg/aTg																																																																															
CD276	80381	MSKCC	GRCh37	15	73994829	73994829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	168	286	1	ENST00000318443.5:c.313G>A	p.Ala105Thr	p.A105T	ENST00000318443	NM_001024736.1	105	Gca/Aca																																																																															
AXIN1	8312	MSKCC	GRCh37	16	338151	338153	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	357	592	0	ENST00000262320.3:c.2558_2560del	p.Lys853del	p.K853del	ENST00000262320	NM_003502.3	853	aAGAtc/atc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222500	2222500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	486	774	1	ENST00000326181.6:c.694C>T	p.Arg232Trp	p.R232W	ENST00000326181	NM_032271.2	232	Cgg/Tgg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225603	2225603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	400	651	2	ENST00000326181.6:c.1606G>A	p.Gly536Ser	p.G536S	ENST00000326181	NM_032271.2	536	Ggc/Agc																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349186	11349186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	69	125	2	ENST00000332029.2:c.150del	p.Gly51AlafsTer34	p.G51Afs*34	ENST00000332029	NM_003745.1	50	ccC/cc																																																																															
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	249	429	0	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991704	72991704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	250	282	0	ENST00000268489.5:c.2341G>A	p.Ala781Thr	p.A781T	ENST00000268489	NM_006885.3	781	Gcg/Acg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993624	72993624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	328	634	0	ENST00000268489.5:c.421G>A	p.Ala141Thr	p.A141T	ENST00000268489	NM_006885.3	141	Gcg/Acg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89352037	89352037	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138353708		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	383	578	1	ENST00000301030.4:c.913G>A	p.Ala305Thr	p.A305T	ENST00000301030	NM_001256183.1	305	Gca/Aca																																																																															
FANCA	2175	MSKCC	GRCh37	16	89846290	89846290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	283	474	1	ENST00000389301.3:c.1702G>A	p.Val568Ile	p.V568I	ENST00000389301	NM_000135.2	568	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578425	7578425	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	463	735	0	ENST00000269305.4:c.505A>G	p.Met169Val	p.M169V	ENST00000269305	NM_001126112.2	169	Atg/Gtg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	119	253	0	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	297	562	10	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
NF1	4763	MSKCC	GRCh37	17	29553493	29553493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	346	619	0	ENST00000358273.4:c.2042G>A	p.Arg681Gln	p.R681Q	ENST00000358273	NM_001042492.2	681	cGa/cAa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37649111	37649111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	138	234	0	ENST00000447079.4:c.2216G>A	p.Gly739Asp	p.G739D	ENST00000447079	NM_015083.1	739	gGc/gAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581268	48581268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	226	532	0	ENST00000342988.3:c.572C>T	p.Ser191Leu	p.S191L	ENST00000342988	NM_005359.5	191	tCg/tTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2194571	2194571	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	216	301	0	ENST00000398665.3:c.646T>C	p.Tyr216His	p.Y216H	ENST00000398665	NM_032482.2	216	Tac/Cac																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222313	2222313	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1194	477	732	0	ENST00000398665.3:c.3145A>G	p.Ile1049Val	p.I1049V	ENST00000398665	NM_032482.2	1049	Atc/Gtc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4110607	4110607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	447	563	0	ENST00000262948.5:c.350G>A	p.Arg117His	p.R117H	ENST00000262948	NM_030662.3	117	cGc/cAc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967091	18967092	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs1384543747		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	318	627	0	ENST00000262803.5:c.1814_1815del	p.Glu605AlafsTer17	p.E605Afs*17	ENST00000262803	NM_002911.3	602	gcAGag/gcag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213611	36213611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1262	484	818	0	ENST00000222270.7:c.2713G>A	p.Ala905Thr	p.A905T	ENST00000222270	NM_014727.1	905	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224339	36224340	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1228	340	819	4	ENST00000222270.7:c.6895dupC	p.Arg2299ProfsTer4	p.R2299Pfs*4	ENST00000222270	NM_014727.1	2297	gcc/gCcc																																																																															
ERF	2077	MSKCC	GRCh37	19	42754583	42754583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	427	750	2	ENST00000222329.4:c.157G>A	p.Gly53Arg	p.G53R	ENST00000222329	NM_006494.2	53	Ggg/Agg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902182	50902182	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	454	708	0	ENST00000440232.2:c.74A>G	p.Asp25Gly	p.D25G	ENST00000440232	NM_002691.3	25	gAt/gGt																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085995	16085995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	256	417	0	ENST00000281043.3:c.1171C>T	p.Arg391Cys	p.R391C	ENST00000281043	NM_005378.4	391	Cgc/Tgc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25497874	25497874	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	384	634	0	ENST00000264709.3:c.575C>A	p.Ala192Glu	p.A192E	ENST00000264709	NM_175629.2	192	gCg/gAg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25497944	25497944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	282	483	0	ENST00000264709.3:c.505C>T	p.Arg169Trp	p.R169W	ENST00000264709	NM_175629.2	169	Cgg/Tgg																																																																															
ALK	238	MSKCC	GRCh37	2	29446389	29446389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	410	697	0	ENST00000389048.3:c.3178C>T	p.Arg1060Cys	p.R1060C	ENST00000389048	NM_004304.4	1060	Cgc/Tgc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	147	312	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098891	178098892	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	186	350	0	ENST00000397062.3:c.153_154del	p.Lys53ThrfsTer2	p.K53Tfs*2	ENST00000397062	NM_006164.4	51	caGAaa/caaa																																																																															
ERG	2078	MSKCC	GRCh37	21	39772564	39772564	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	136	218	0	ENST00000288319.7:c.677delG	p.Gly226ValfsTer65	p.G226Vfs*65	ENST00000288319	NM_182918.3	226	gGt/gt																																																																															
ERG	2078	MSKCC	GRCh37	21	39795373	39795373	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	314	607	0	ENST00000288319.7:c.347del	p.Pro116GlnfsTer3	p.P116Qfs*3	ENST00000288319	NM_182918.3	116	cCa/ca																																																																															
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1154	409	707	1	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	305	244	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933438	49933438	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	408	630	3	ENST00000296474.3:c.2752delC	p.Leu918CysfsTer18	p.L918Cfs*18	ENST00000296474	NM_002447.2	918	Ctg/tg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439887	52439887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	285	403	0	ENST00000460680.1:c.825G>T	p.Lys275Asn	p.K275N	ENST00000460680	NM_004656.3	275	aaG/aaT																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799959	72799959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	61	235	0	ENST00000325599.8:c.1210G>A	p.Ala404Thr	p.A404T	ENST00000325599	NM_018130.2	404	Gcc/Acc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169999051	169999051	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	85	145	0	ENST00000295797.4:c.980G>T	p.Arg327Ile	p.R327I	ENST00000295797	NM_002740.5	327	aGa/aTa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	41	170	0	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509127	66509127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145126637		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	38	181	0	ENST00000273854.3:c.200G>A	p.Arg67His	p.R67H	ENST00000273854	NM_004439.5	67	cGc/cAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540670	187540670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	172	279	0	ENST00000441802.2:c.7070C>T	p.Thr2357Met	p.T2357M	ENST00000441802	NM_005245.3	2357	aCg/aTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1280299	1280299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	513	751	0	ENST00000310581.5:c.1924G>T	p.Ala642Ser	p.A642S	ENST00000310581	NM_198253.2	642	Gcc/Tcc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	81	190	1	ENST00000303115.3:c.361delA	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753348	57753348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	130	293	0	ENST00000274289.3:c.776G>T	p.Cys259Phe	p.C259F	ENST00000274289	NM_006622.3	259	tGt/tTt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	228	340	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564300	86564300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	190	376	0	ENST00000274376.6:c.32G>A	p.Gly11Asp	p.G11D	ENST00000274376	NM_002890.2	11	gGc/gAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047631	180047631	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	289	456	0	ENST00000261937.6:c.2384T>A	p.Leu795His	p.L795H	ENST00000261937	NM_182925.4	795	cTc/cAc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956682	93956682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	111	241	0	ENST00000369303.4:c.2554G>A	p.Gly852Ser	p.G852S	ENST00000369303	NM_004440.3	852	Ggt/Agt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106554937	106554937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	256	387	1	ENST00000369096.4:c.2054G>A	p.Arg685Gln	p.R685Q	ENST00000369096	NM_001198.3	685	cGg/cAg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202370	138202370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	275	553	1	ENST00000237289.4:c.2287C>T	p.Arg763Trp	p.R763W	ENST00000237289	NM_001270507.1	763	Cgg/Tgg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129307	152129307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	400	666	1	ENST00000206249.3:c.260C>T	p.Ala87Val	p.A87V	ENST00000206249	NM_000125.3	87	gCg/gTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	717	609	5	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55214367	55214367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778252		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	248	532	0	ENST00000275493.2:c.493C>T	p.Arg165Trp	p.R165W	ENST00000275493	NM_005228.3	165	Cgg/Tgg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526647	106526648	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	144	328	0	ENST00000359195.3:c.2946_2947del	p.Arg982SerfsTer8	p.R982Sfs*8	ENST00000359195	NM_002649.2	980	aaAGag/aaag																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	431	766	0	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	247	323	12	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68950480	68950481	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	163	288	0	ENST00000288368.4:c.798dup	p.Leu267SerfsTer4	p.L267Sfs*4	ENST00000288368	NM_024870.2	264	-/T																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1201	421	753	3	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																															
JAK2	3717	MSKCC	GRCh37	9	5064997	5064997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	106	217	0	ENST00000381652.3:c.1171G>A	p.Ala391Thr	p.A391T	ENST00000381652	NM_004972.3	391	Gcc/Acc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98242281	98242281	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	221	430	0	ENST00000331920.6:c.1037del	p.Thr346LysfsTer21	p.T346Kfs*21	ENST00000331920	NM_000264.3	346	aCa/aa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969407	44969407	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	180	152	0	ENST00000377967.4:c.4093del	p.Thr1365GlnfsTer11	p.T1365Qfs*11	ENST00000377967	NM_021140.2	1363	cgA/cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	375	292	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59857648	59857648	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	63	243	0	ENST00000259008.2:c.1909G>T	p.Ala637Ser	p.A637S	ENST00000259008	NM_032043.2	637	Gct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578470	7578471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	505	821	0	ENST00000269305.4:c.459dup	p.Gly154ArgfsTer27	p.G154Rfs*27	ENST00000269305	NM_001126112.2	153	-/C																																																																															
CBL	867	MSKCC	GRCh37	11	119148876	119148876	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	132	169	0	ENST00000264033.4:c.1096G>T	p.Glu366Ter	p.E366*	ENST00000264033	NM_005188.3	366	Gaa/Taa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307593	118307593	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	242	757	0	ENST00000534358.1:c.366C>G	p.Ile122Met	p.I122M	ENST00000534358	NM_005933.3	122	atC/atG																																																																															
NUF2	83540	MSKCC	GRCh37	1	163317592	163317592	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	47	219	1	ENST00000271452.3:c.988G>T	p.Glu330Ter	p.E330*	ENST00000271452	NM_145697.2	330	Gaa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106230	27106230	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	163	464	0	ENST00000324856.7:c.5841G>T	p.Gln1947His	p.Q1947H	ENST00000324856	NM_006015.4	1947	caG/caT																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551366	150551366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	549	906	0	ENST00000369026.2:c.641G>A	p.Arg214Gln	p.R214Q	ENST00000369026	NM_021960.4	214	cGa/cAa																																																																															
RET	5979	MSKCC	GRCh37	10	43606880	43606880	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1258	361	836	1	ENST00000355710.3:c.1489C>A	p.Gln497Lys	p.Q497K	ENST00000355710	NM_020975.4	497	Cag/Aag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343396	118343396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	72	276	0	ENST00000534358.1:c.1522G>A	p.Glu508Lys	p.E508K	ENST00000534358	NM_005933.3	508	Gaa/Aaa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435232	110435232	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	287	431	0	ENST00000375856.3:c.3169G>T	p.Gly1057Cys	p.G1057C	ENST00000375856	NM_003749.2	1057	Ggc/Tgc																																																																															
AKT1	207	MSKCC	GRCh37	14	105242086	105242086	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	214	711	0	ENST00000349310.3:c.338A>T	p.Gln113Leu	p.Q113L	ENST00000349310	NM_001014432.1	113	cAg/cTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89838182	89838182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	169	419	0	ENST00000389301.3:c.2055G>T	p.Arg685Ser	p.R685S	ENST00000389301	NM_000135.2	685	agG/agT																																																																															
RARA	5914	MSKCC	GRCh37	17	38511619	38511619	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	210	641	0	ENST00000254066.5:c.1117A>G	p.Met373Val	p.M373V	ENST00000254066	NM_000964.3	373	Atg/Gtg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40457655	40457655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	190	627	0	ENST00000345506.4:c.1408G>A	p.Val470Ile	p.V470I	ENST00000345506	NM_003152.3	470	Gtc/Atc																																																																															
CIC	23152	MSKCC	GRCh37	19	42795136	42795136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	437	885	0	ENST00000575354.2:c.2216C>T	p.Ser739Leu	p.S739L	ENST00000575354	NM_015125.3	739	tCa/tTa																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46603714	46603714	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	317	562	0	ENST00000263734.3:c.1071C>G	p.Asp357Glu	p.D357E	ENST00000263734	NM_001430.4	357	gaC/gaG																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713349	40713349	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	152	633	0	ENST00000373198.4:c.4166G>C	p.Arg1389Thr	p.R1389T	ENST00000373198	NM_133170.3	1389	aGg/aCg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733243	40733244	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	117	446	0	ENST00000373198.4:c.3562_3563delinsAG	p.Gln1188Arg	p.Q1188R	ENST00000373198	NM_133170.3	1188	CAg/AGg																																																																															
ATR	545	MSKCC	GRCh37	3	142204115	142204115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	87	286	0	ENST00000350721.4:c.6088G>T	p.Ala2030Ser	p.A2030S	ENST00000350721	NM_001184.3	2030	Gcg/Tcg																																																																															
KIT	3815	MSKCC	GRCh37	4	55564561	55564561	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	138	432	0	ENST00000288135.5:c.449G>T	p.Gly150Val	p.G150V	ENST00000288135	NM_000222.2	150	gGg/gTg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459827	149459827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	212	769	0	ENST00000286301.3:c.380G>A	p.Cys127Tyr	p.C127Y	ENST00000286301	NM_005211.3	127	tGt/tAt																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271325	26271326	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	285	480	0	ENST00000305910.3:c.287_288delinsAG	p.Ala96Glu	p.A96E	ENST00000305910	NM_003534.2	96	gCC/gAG																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163592	32163592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1202	362	588	0	ENST00000375023.3:c.5634G>T	p.Gln1878His	p.Q1878H	ENST00000375023	NM_004557.3	1878	caG/caT																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202433	138202433	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	207	600	1	ENST00000237289.4:c.2350C>T	p.Gln784Ter	p.Q784*	ENST00000237289	NM_001270507.1	784	Cag/Tag																																																																															
ETV1	2115	MSKCC	GRCh37	7	13978873	13978873	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	64	264	0	ENST00000405192.2:c.236-2A>T		p.X79_splice	ENST00000405192	NM_001163147.1	79																																																																																
HGF	3082	MSKCC	GRCh37	7	81355274	81355274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	64	230	0	ENST00000222390.5:c.1100C>A	p.Thr367Asn	p.T367N	ENST00000222390	NM_000601.4	367	aCc/aAc																																																																															
MET	4233	MSKCC	GRCh37	7	116398637	116398637	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	83	316	0	ENST00000397752.3:c.2227A>G	p.Ile743Val	p.I743V	ENST00000397752	NM_000245.2	743	Att/Gtt																																																																															
BRAF	673	MSKCC	GRCh37	7	140501222	140501222	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	163	294	0	ENST00000288602.6:c.850G>C	p.Asp284His	p.D284H	ENST00000288602	NM_004333.4	284	Gac/Cac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389324	8389324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	168	416	0	ENST00000356435.5:c.4294C>T	p.Leu1432Phe	p.L1432F	ENST00000356435		1432	Ctc/Ttc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499712	8499712	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	273	410	0	ENST00000356435.5:c.2257A>T	p.Arg753Trp	p.R753W	ENST00000356435		753	Agg/Tgg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636827	8636827	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	155	313	0	ENST00000356435.5:c.82C>G	p.Arg28Gly	p.R28G	ENST00000356435		28	Cga/Gga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410144	63410144	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	65	705	0	ENST00000330258.3:c.3023C>A	p.Pro1008Gln	p.P1008Q	ENST00000330258	NM_152424.3	1008	cCa/cAa																																																																															
ATRX	546	MSKCC	GRCh37	X	76920251	76920251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	70	231	0	ENST00000373344.5:c.3826C>T	p.Leu1276Phe	p.L1276F	ENST00000373344	NM_000489.3	1276	Ctt/Ttt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0047635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	224	360	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0047635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	114	196	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174113	112174113	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	115	181	0	ENST00000257430.4:c.2825del	p.Asn942IlefsTer13	p.N942Ifs*13	ENST00000257430	NM_000038.5	941	gAa/ga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866393	37866393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	881	727	0	ENST00000269571.5:c.698C>T	p.Thr233Ile	p.T233I	ENST00000269571		233	aCt/aTt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	294	557	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579568	7579568	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	655	487	0	ENST00000269305.4:c.119del	p.Met40ArgfsTer4	p.M40Rfs*4	ENST00000269305	NM_001126112.2	40	aTg/ag																																																																															
CASP8	841	MSKCC	GRCh37	2	202149865	202149865	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	46	372	0	ENST00000358485.4:c.1306G>T	p.Glu436Ter	p.E436*	ENST00000358485	NM_001080125.1	436	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0047639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	357	760	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40899060	40899060	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	106	573	0	ENST00000373198.4:c.2210C>A	p.Thr737Asn	p.T737N	ENST00000373198	NM_133170.3	737	aCt/aAt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23640563	23640563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	83	412	0	ENST00000261584.4:c.2548A>G	p.Ile850Val	p.I850V	ENST00000261584	NM_024675.3	850	Ata/Gta																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688737	47688737	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	90	367	0	ENST00000347630.2:c.563A>G	p.Asp188Gly	p.D188G	ENST00000347630	NM_001007230.1	188	gAt/gGt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871271	35871271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	58	275	0	ENST00000303115.3:c.493C>A	p.His165Asn	p.H165N	ENST00000303115	NM_002185.3	165	Cac/Aac																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652429	48652429	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	175	1133	2	ENST00000376670.3:c.1100T>A	p.Leu367Gln	p.L367Q	ENST00000376670	NM_002049.3	367	cTg/cAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76937561	76937561	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	37	293	0	ENST00000373344.5:c.3187T>A	p.Tyr1063Asn	p.Y1063N	ENST00000373344	NM_000489.3	1063	Tat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	13	347	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0047651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	201	431	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0047651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	20	199	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259489	89259489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	44	310	0	ENST00000336596.2:c.633G>T	p.Met211Ile	p.M211I	ENST00000336596	NM_005233.5	211	atG/atT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212587118	212587118	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs74898139		P-0047651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	66	199	0	ENST00000342788.4:c.883C>T	p.His295Tyr	p.H295Y	ENST00000342788	NM_005235.2	295	Cat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112174774	112174774	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	49	118	0	ENST00000257430.4:c.3484del	p.Tyr1162IlefsTer3	p.Y1162Ifs*3	ENST00000257430	NM_000038.5	1161	aaT/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822299	72822299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	140	626	0	ENST00000268489.5:c.9876G>T	p.Gln3292His	p.Q3292H	ENST00000268489	NM_006885.3	3292	caG/caT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0047669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	38	235	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ATM	472	MSKCC	GRCh37	11	108236081	108236081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	30	344	0	ENST00000278616.4:c.9017C>T	p.Ala3006Val	p.A3006V	ENST00000278616	NM_000051.3	3006	gCt/gTt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066889	30066889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	63	355	0	ENST00000331968.5:c.2242G>A	p.Ala748Thr	p.A748T	ENST00000331968	NM_002742.2	748	Gct/Act																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900262	101900263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0047669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	34	243	0	ENST00000374994.4:c.699_700dup	p.Phe234TyrfsTer20	p.F234Yfs*20	ENST00000374994	NM_004612.2	232	-/AT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0047671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	201	553	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0047671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	74	262	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591902	48591902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	113	327	0	ENST00000342988.3:c.1065C>A	p.Asp355Glu	p.D355E	ENST00000342988	NM_005359.5	355	gaC/gaA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874092	151874092	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	144	405	0	ENST00000262189.6:c.8446T>A	p.Ser2816Thr	p.S2816T	ENST00000262189	NM_170606.2	2816	Tcc/Acc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94908802	94908802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	106	293	0	ENST00000536441.1:c.1252G>A	p.Asp418Asn	p.D418N	ENST00000536441	NM_144665.3	418	Gat/Aat																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986511	36986511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	138	679	1	ENST00000354822.5:c.1178C>T	p.Ser393Phe	p.S393F	ENST00000354822	NM_001079668.2	393	tCc/tTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249076	55249076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	207	542	1	ENST00000275493.2:c.2374C>T	p.Leu792Phe	p.L792F	ENST00000275493	NM_005228.3	792	Ctc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0047672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	17	341	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061011	38061011	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	81	491	0	ENST00000250448.2:c.978del	p.Ala329ProfsTer21	p.A329Pfs*21	ENST00000250448	NM_004496.3	326	ccC/cc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249016	55249017	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCCACG			P-0047183-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			883	266	676	0	ENST00000275493.2:c.2315_2320dup	p.His773_Val774insAlaHis	p.H773_V774insAH	ENST00000275493	NM_005228.3	772	ccc/cCCCACGcc																																																																															
ATM	472	MSKCC	GRCh37	11	108106538	108106538	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047183-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	51	229	0	ENST00000278616.4:c.473A>T	p.Glu158Val	p.E158V	ENST00000278616	NM_000051.3	158	gAa/gTa																																																																															
FH	2271	MSKCC	GRCh37	1	241682964	241682964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047183-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1256	78	670	1	ENST00000366560.3:c.59C>T	p.Ala20Val	p.A20V	ENST00000366560	NM_000143.3	20	gCa/gTa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751131	57751131	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047183-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			301	24	243	0	ENST00000274289.3:c.1736T>C	p.Met579Thr	p.M579T	ENST00000274289	NM_006622.3	579	aTg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	175	971	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	24	623	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	26	794	3	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247243	153247243	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	18	564	0	ENST00000281708.4:c.1559A>T	p.Asp520Val	p.D520V	ENST00000281708	NM_033632.3	520	gAt/gTt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508257	106508257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	108	577	1	ENST00000359195.3:c.251C>T	p.Ala84Val	p.A84V	ENST00000359195	NM_002649.2	84	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112151291	112151291	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	17	387	0	ENST00000257430.4:c.933+1G>A		p.X311_splice	ENST00000257430	NM_000038.5	311																																																																																
RTEL1	51750	MSKCC	GRCh37	20	62298844	62298844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	81	1011	0	ENST00000508582.2:c.709C>T	p.Arg237Trp	p.R237W	ENST00000508582		237	Cgg/Tgg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753452	42753452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	247	1134	1	ENST00000222329.4:c.812C>T	p.Thr271Met	p.T271M	ENST00000222329	NM_006494.2	271	aCg/aTg																																																																															
MITF	4286	MSKCC	GRCh37	3	70014383	70014383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	63	804	0	ENST00000352241.4:c.1547C>T	p.Thr516Met	p.T516M	ENST00000352241	NM_198159.2	516	aCg/aTg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88681425	88681425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	39	702	0	ENST00000372037.3:c.1315G>A	p.Glu439Lys	p.E439K	ENST00000372037	NM_004329.2	439	Gag/Aag																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589528	69589528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	72	138	2	ENST00000168712.1:c.325G>A	p.Ala109Thr	p.A109T	ENST00000168712	NM_002007.2	109	Gcg/Acg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112226	115112226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	92	395	2	ENST00000257566.3:c.1514C>T	p.Pro505Leu	p.P505L	ENST00000257566	NM_016569.3	505	cCg/cTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106155847	106155847	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	14	580	0	ENST00000380013.4:c.748A>G	p.Asn250Asp	p.N250D	ENST00000380013	NM_001127208.2	250	Aat/Gat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0047486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	197	664	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098950	178098950	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	78	283	0	ENST00000397062.3:c.95T>G	p.Val32Gly	p.V32G	ENST00000397062	NM_006164.4	32	gTa/gGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0047486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	100	501	0	ENST00000269305.4:c.993+2T>C		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
LATS1	9113	MSKCC	GRCh37	6	150023183	150023183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	94	441	0	ENST00000253339.5:c.80G>T	p.Ser27Ile	p.S27I	ENST00000253339		27	aGc/aTc																																																																															
AR	367	MSKCC	GRCh37	X	66766462	66766462	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	99	509	1	ENST00000374690.3:c.1474G>T	p.Gly492Cys	p.G492C	ENST00000374690	NM_000044.3	492	Ggc/Tgc																																																																															
ATRX	546	MSKCC	GRCh37	X	76937996	76937996	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	82	508	0	ENST00000373344.5:c.2752A>T	p.Thr918Ser	p.T918S	ENST00000373344	NM_000489.3	918	Act/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	57	378	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612623	228612623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	25	580	0	ENST00000366696.1:c.404G>T	p.Arg135Leu	p.R135L	ENST00000366696	NM_003493.2	135	cGg/cTg																																																																															
ATM	472	MSKCC	GRCh37	11	108236117	108236117	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	86	458	2	ENST00000278616.4:c.9053A>T	p.Lys3018Ile	p.K3018I	ENST00000278616	NM_000051.3	3018	aAa/aTa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30108074	30108074	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0047488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	75	513	0	ENST00000331968.5:c.733A>T	p.Lys245Ter	p.K245*	ENST00000331968	NM_002742.2	245	Aag/Tag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043477	180043477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	56	680	0	ENST00000261937.6:c.3109G>C	p.Asp1037His	p.D1037H	ENST00000261937	NM_182925.4	1037	Gac/Cac																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004558	150004558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	24	669	2	ENST00000253339.5:c.1667C>T	p.Pro556Leu	p.P556L	ENST00000253339		556	cCa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0047548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	163	833	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0047548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	87	385	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0047548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	83	306	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11205059	11205059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	257	461	1	ENST00000361445.4:c.4730C>T	p.Ala1577Val	p.A1577V	ENST00000361445	NM_004958.3	1577	gCg/gTg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375023	45375023	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	61	278	0	ENST00000262160.6:c.820T>C	p.Trp274Arg	p.W274R	ENST00000262160	NM_005901.5	274	Tgg/Cgg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033483	48033483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	79	330	1	ENST00000234420.5:c.3787C>T	p.Arg1263Cys	p.R1263C	ENST00000234420	NM_000179.2	1263	Cgc/Tgc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651278	52651294	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CTGGGAGCCCTCCTCAT	CTGGGAGCCCTCCTCAT	-			P-0047548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	58	286	0	ENST00000394830.3:c.1802_1818del	p.Asn601SerfsTer3	p.N601Sfs*3	ENST00000394830	NM_018313.4	601	aATGAGGAGGGCTCCCAG/a																																																																															
APC	324	MSKCC	GRCh37	5	112175863	112175863	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	80	175	0	ENST00000257430.4:c.4573del	p.Met1525CysfsTer40	p.M1525Cfs*40	ENST00000257430	NM_000038.5	1524	atA/at																																																																															
ATRX	546	MSKCC	GRCh37	X	76829756	76829756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	89	375	0	ENST00000373344.5:c.6285G>T	p.Arg2095Ser	p.R2095S	ENST00000373344	NM_000489.3	2095	agG/agT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	103	366	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MGA	23269	MSKCC	GRCh37	15	42042235	42042235	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	37	394	1	ENST00000219905.7:c.6430G>T	p.Gly2144Ter	p.G2144*	ENST00000219905	NM_001164273.1	2144	Gga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1218485	1218486	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0047550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	46	518	0	ENST00000326873.7:c.363_364del	p.Lys122AlafsTer40	p.K122Afs*40	ENST00000326873	NM_000455.4	120	gaAGag/gaag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40710653	40710653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	42	442	0	ENST00000373198.4:c.4198G>A	p.Gly1400Arg	p.G1400R	ENST00000373198	NM_133170.3	1400	Ggg/Agg																																																																															
SMO	6608	MSKCC	GRCh37	7	128843293	128843293	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	129	1069	1	ENST00000249373.3:c.400T>A	p.Cys134Ser	p.C134S	ENST00000249373	NM_005631.4	134	Tgt/Agt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945121	151945121	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	14	384	0	ENST00000262189.6:c.2398T>A	p.Tyr800Asn	p.Y800N	ENST00000262189	NM_170606.2	800	Tac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	18	320	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220687	1220687	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	37	1162	0	ENST00000326873.7:c.706del	p.Val236TrpfsTer51	p.V236Wfs*51	ENST00000326873	NM_000455.4	235	aaG/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0047574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	23	726	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913233		P-0047574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	32	860	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0047578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	627	624	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40376853	40376853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	156	502	0	ENST00000293328.3:c.319C>T	p.Arg107Cys	p.R107C	ENST00000293328	NM_012448.3	107	Cgc/Tgc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3808045	3808045	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	84	271	0	ENST00000262367.5:c.3374A>G	p.Tyr1125Cys	p.Y1125C	ENST00000262367	NM_004380.2	1125	tAt/tGt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661616	227661616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	225	728	0	ENST00000305123.5:c.1839G>A	p.Met613Ile	p.M613I	ENST00000305123	NM_005544.2	613	atG/atA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023017	27023027	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCAGCGG	GGCGGCAGCGG	-			P-0047578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	61	33	0	ENST00000324856.7:c.123_133del	p.Ala42ArgfsTer65	p.A42Rfs*65	ENST00000324856	NM_006015.4	41	gcGGCGGCAGCGGcc/gccc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67670755	67670755	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0047578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	288	345	0	ENST00000264010.4:c.1999+1del		p.X667_splice	ENST00000264010	NM_006565.3	667																																																																																
BRD4	23476	MSKCC	GRCh37	19	15349756	15349756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	256	825	2	ENST00000263377.2:c.3818G>A	p.Arg1273Gln	p.R1273Q	ENST00000263377	NM_058243.2	1273	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916780	178916780	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	97	305	0	ENST00000263967.3:c.167A>G	p.Tyr56Cys	p.Y56C	ENST00000263967	NM_006218.2	56	tAc/tGc																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538787	23538787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	255	364	0	ENST00000380871.4:c.652C>A	p.Pro218Thr	p.P218T	ENST00000380871	NM_006167.3	218	Cct/Act																																																																															
TEK	7010	MSKCC	GRCh37	9	27197353	27197353	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	93	436	0	ENST00000380036.4:c.1665T>G	p.Ser555Arg	p.S555R	ENST00000380036	NM_000459.3	555	agT/agG																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40747089	40747089	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	50	543	0	ENST00000373198.4:c.2993A>C	p.Asn998Thr	p.N998T	ENST00000373198	NM_133170.3	998	aAc/aCc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729579	41729579	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	157	561	0	ENST00000242208.4:c.950A>C	p.Lys317Thr	p.K317T	ENST00000242208	NM_002192.2	317	aAg/aCg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045888	47045888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			399	99	397	1	ENST00000329236.7:c.2449C>T	p.Arg817Trp	p.R817W	ENST00000329236	NM_001204466.1	817	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			666	200	780	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	77	238	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31389135	31389135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			584	100	627	0	ENST00000328111.2:c.2048G>A	p.Arg683His	p.R683H	ENST00000328111	NM_006892.3	683	cGc/cAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022388	31022388	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs868446207		P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	65	433	0	ENST00000375687.4:c.1873C>T	p.Arg625Ter	p.R625*	ENST00000375687	NM_015338.5	625	Cga/Tga																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349730	15349730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			762	115	744	0	ENST00000263377.2:c.3844C>T	p.Arg1282Cys	p.R1282C	ENST00000263377	NM_058243.2	1282	Cgc/Tgc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185165687	185165687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			538	150	440	0	ENST00000265026.3:c.962C>T	p.Ala321Val	p.A321V	ENST00000265026	NM_004721.4	321	gCg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779343	3779343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			745	344	802	1	ENST00000262367.5:c.5705C>T	p.Thr1902Met	p.T1902M	ENST00000262367	NM_004380.2	1902	aCg/aTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911508	134911508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201816783		P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			829	59	686	0	ENST00000398015.3:c.1973C>T	p.Ser658Leu	p.S658L	ENST00000398015	NM_004441.4	658	tCg/tTg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			828	242	941	2	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			944	92	857	4	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134569	2134569	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			990	122	831	4	ENST00000219476.3:c.4351del	p.Arg1451AlafsTer25	p.R1451Afs*25	ENST00000219476	NM_000548.3	1449	tCc/tc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625302	69625302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			899	99	842	0	ENST00000334134.2:c.491G>A	p.Arg164His	p.R164H	ENST00000334134	NM_005247.2	164	cGc/cAc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475282	40475282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			636	203	606	1	ENST00000264657.5:c.1744G>A	p.Glu582Lys	p.E582K	ENST00000264657	NM_139276.2	582	Gaa/Aaa																																																																															
STAT3	6774	MSKCC	GRCh37	17	40491387	40491387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			855	101	760	1	ENST00000264657.5:c.413C>T	p.Thr138Met	p.T138M	ENST00000264657	NM_139276.2	138	aCg/aTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098489	11098489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	127	348	1	ENST00000344626.4:c.1007C>T	p.Pro336Leu	p.P336L	ENST00000344626	NM_003072.3	336	cCg/cTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120461984	120461984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			574	185	620	1	ENST00000256646.2:c.5732G>A	p.Arg1911His	p.R1911H	ENST00000256646	NM_024408.3	1911	cGc/cAc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14042145	14042145	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	185	368	0	ENST00000311895.7:c.2692T>A	p.Tyr898Asn	p.Y898N	ENST00000311895	NM_005236.2	898	Tat/Aat																																																																															
MSH2	4436	MSKCC	GRCh37	2	47656981	47656984	+	frameshift_variant	Frame_Shift_Del	DEL	AAGT	AAGT	-			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			342	85	424	0	ENST00000233146.2:c.1177_1180del	p.Lys393PhefsTer18	p.K393Ffs*18	ENST00000233146	NM_000251.2	393	AAGTtt/tt																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128036864	128036865	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			793	106	722	0	ENST00000285398.2:c.1614dup	p.Asn539GlnfsTer4	p.N539Qfs*4	ENST00000285398	NM_000122.1	538	-/C																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40979283	40979283	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146000056		P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			750	92	620	0	ENST00000373198.4:c.1850G>A	p.Arg617Gln	p.R617Q	ENST00000373198	NM_133170.3	617	cGg/cAg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295168	1295168	+	upstream_gene_variant	5'Flank	DEL	C	C	-			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			157	50	172	0				ENST00000310581	NM_198253.2																																																																																	
MSH3	4437	MSKCC	GRCh37	5	80063779	80063779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	57	513	0	ENST00000265081.6:c.1924G>A	p.Val642Ile	p.V642I	ENST00000265081	NM_002439.4	642	Gtc/Atc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410990	63410990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			395	132	386	0	ENST00000330258.3:c.2177C>T	p.Ala726Val	p.A726V	ENST00000330258	NM_152424.3	726	gCc/gTc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37873715	37873715	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047031-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			440	204	812	1	ENST00000269571.5:c.1880C>T	p.Pro627Leu	p.P627L	ENST00000269571		627	cCc/cTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0047031-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			133	71	540	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0047031-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	163	907	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047031-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			260	96	521	1	ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041007	47041007	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047031-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			124	115	436	0	ENST00000329236.7:c.1303G>T	p.Glu435Ter	p.E435*	ENST00000329236	NM_001204466.1	435	Gag/Tag																																																																															
AR	367	MSKCC	GRCh37	X	66942786	66942786	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs9332971		P-0047031-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			99	100	310	1	ENST00000374690.3:c.2567G>A	p.Arg856His	p.R856H	ENST00000374690	NM_000044.3	856	cGc/cAc																																																																															
RET	5979	MSKCC	GRCh37	10	43613888	43613888	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047031-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			270	73	855	1	ENST00000355710.3:c.2354del	p.Pro785HisfsTer84	p.P785Hfs*84	ENST00000355710	NM_020975.4	784	caC/ca																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112769051	112769051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047031-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			170	11	611	1	ENST00000369452.4:c.1330C>T	p.Leu444Phe	p.L444F	ENST00000369452	NM_007373.3	444	Ctt/Ttt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94204925	94204925	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0047031-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			133	26	507	0	ENST00000323929.3:c.660G>T	p.Arg220Ser	p.R220S	ENST00000323929	NM_005591.3	220	agG/agT																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62319080	62319080	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047031-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			444	143	944	0	ENST00000508582.2:c.1510G>T	p.Gly504Cys	p.G504C	ENST00000508582		504	Ggc/Tgc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508695	106508695	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047031-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	99	682	1	ENST00000359195.3:c.689G>T	p.Ser230Ile	p.S230I	ENST00000359195	NM_002649.2	230	aGc/aTc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	119	686	2	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	63	418	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	91	375	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
MPL	4352	MSKCC	GRCh37	1	43804953	43804953	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	48	517	1	ENST00000372470.3:c.408del	p.Ser137ValfsTer29	p.S137Vfs*29	ENST00000372470	NM_005373.2	135	Ccc/cc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	116	525	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023327	27023327	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	26	112	0	ENST00000324856.7:c.437del	p.Pro146GlnfsTer86	p.P146Qfs*86	ENST00000324856	NM_006015.4	145	Ccc/cc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	30	284	0	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32930634	32930634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	31	405	0	ENST00000380152.3:c.7505G>A	p.Arg2502His	p.R2502H	ENST00000380152		2502	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221131	5221131	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201447856		P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	133	1068	3	ENST00000357368.4:c.3335C>T	p.Thr1112Met	p.T1112M	ENST00000357368	NM_002850.3	1112	aCg/aTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291083	10291084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755889652		P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	106	902	7	ENST00000340748.4:c.387dup	p.Lys130GlnfsTer19	p.K130Qfs*19	ENST00000340748		129	-/C																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737820	145737820	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs36023964		P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	129	1124	1	ENST00000428558.2:c.3010C>T	p.Arg1004Trp	p.R1004W	ENST00000428558	NM_004260.3	1004	Cgg/Tgg																																																																															
ARAF	369	MSKCC	GRCh37	X	47424734	47424734	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	106	880	1	ENST00000377045.4:c.547delC	p.Gln183ArgfsTer109	p.Q183Rfs*109	ENST00000377045	NM_001654.4	181	aCc/ac																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188853	32188853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs192478549		P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	85	1011	0	ENST00000375023.3:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000375023	NM_004557.3	234	cGg/cAg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467573	66467573	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	37	430	0	ENST00000273854.3:c.696del	p.Lys232AsnfsTer36	p.K232Nfs*36	ENST00000273854	NM_004439.5	232	aaA/aa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	127	1016	3	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933013	39933013	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	51	1021	1	ENST00000378444.4:c.1586del	p.Asn529ThrfsTer60	p.N529Tfs*60	ENST00000378444	NM_001123385.1	529	aAc/ac																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255694	16255694	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376676096		P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	83	530	0	ENST00000375759.3:c.2959C>T	p.Arg987Cys	p.R987C	ENST00000375759	NM_015001.2	987	Cgc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255563	16255563	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	38	569	2	ENST00000375759.3:c.2828A>G	p.Lys943Arg	p.K943R	ENST00000375759	NM_015001.2	943	aAg/aGg																																																																															
AKT1	207	MSKCC	GRCh37	14	105241276	105241276	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	116	989	0	ENST00000349310.3:c.632C>T	p.Thr211Ile	p.T211I	ENST00000349310	NM_001014432.1	211	aCa/aTa																																																																															
XIAP	331	MSKCC	GRCh37	X	123040864	123040864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	121	679	0	ENST00000355640.3:c.1327C>T	p.Arg443Cys	p.R443C	ENST00000355640		443	Cgc/Tgc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	48	773	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	82	811	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441816	49441816	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	52	852	2	ENST00000301067.7:c.4168del	p.Ala1390GlnfsTer27	p.A1390Qfs*27	ENST00000301067	NM_003482.3	1390	Gca/ca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444933	49444933	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	50	909	4	ENST00000301067.7:c.2533del	p.Arg845GlyfsTer85	p.R845Gfs*85	ENST00000301067	NM_003482.3	845	Cgg/gg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94197307	94197308	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	86	391	0	ENST00000323929.3:c.1196dup	p.Arg400GlnfsTer3	p.R400Qfs*3	ENST00000323929	NM_005591.3	399	ttc/ttTc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323268	31323268	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	37	624	0	ENST00000412585.2:c.721T>C	p.Trp241Arg	p.W241R	ENST00000412585	NM_005514.6	241	Tgg/Cgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714412	40714412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	92	745	0	ENST00000373198.4:c.3985G>A	p.Glu1329Lys	p.E1329K	ENST00000373198	NM_133170.3	1329	Gag/Aag																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370847	55370847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	61	545	2	ENST00000297316.4:c.149C>T	p.Ala50Val	p.A50V	ENST00000297316	NM_022454.3	50	gCg/gTg																																																																															
AXL	558	MSKCC	GRCh37	19	41765647	41765647	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	151	1072	2	ENST00000301178.4:c.2528del	p.Pro843GlnfsTer113	p.P843Qfs*113	ENST00000301178	NM_021913.4	841	gaC/ga																																																																															
MPL	4352	MSKCC	GRCh37	1	43815020	43815041	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCACACTACAGGTACCGCCCCC	GCACACTACAGGTACCGCCCCC	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	114	761	0	ENST00000372470.3:c.1557_1565+13del		p.X519_splice	ENST00000372470	NM_005373.2	519																																																																																
CDC73	79577	MSKCC	GRCh37	1	193099341	193099341	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	79	281	0	ENST00000367435.3:c.275A>G	p.Lys92Arg	p.K92R	ENST00000367435	NM_024529.4	92	aAa/aGa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982157	201982157	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	140	1010	0	ENST00000359651.3:c.681C>A	p.Phe227Leu	p.F227L	ENST00000359651		227	ttC/ttA																																																																															
FH	2271	MSKCC	GRCh37	1	241667515	241667515	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	58	226	0	ENST00000366560.3:c.935T>C	p.Phe312Ser	p.F312S	ENST00000366560	NM_000143.3	312	tTt/tCt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118347526	118347527	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	105	442	0	ENST00000534358.1:c.3166dup	p.Ser1056LysfsTer2	p.S1056Kfs*2	ENST00000534358	NM_005933.3	1055	gaa/gAaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445238	49445238	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	109	1247	0	ENST00000301067.7:c.2228T>C	p.Leu743Pro	p.L743P	ENST00000301067	NM_003482.3	743	cTg/cCg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30194790	30194791	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	124	626	0	ENST00000331968.5:c.354dup	p.Ala119SerfsTer4	p.A119Sfs*4	ENST00000331968	NM_002742.2	118	-/A																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43699749	43699750	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	76	533	0	ENST00000382044.4:c.5765_5766del	p.Phe1922Ter	p.F1922*	ENST00000382044	NM_001141980.1	1922	tTT/t																																																																															
FLCN	201163	MSKCC	GRCh37	17	17122362	17122362	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	68	836	0	ENST00000285071.4:c.1033G>T	p.Val345Phe	p.V345F	ENST00000285071	NM_144997.5	345	Gtc/Ttc																																																																															
YES1	7525	MSKCC	GRCh37	18	756562	756562	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	137	395	0	ENST00000314574.4:c.266T>C	p.Leu89Ser	p.L89S	ENST00000314574	NM_005433.3	89	tTa/tCa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221126	5221126	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	114	1058	0	ENST00000357368.4:c.3340A>G	p.Thr1114Ala	p.T1114A	ENST00000357368	NM_002850.3	1114	Acc/Gcc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311608	15311608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	24	193	1	ENST00000263388.2:c.109G>T	p.Gly37Trp	p.G37W	ENST00000263388	NM_000435.2	37	Ggg/Tgg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714693	52714693	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	157	1045	0	ENST00000322088.6:c.451T>A	p.Phe151Ile	p.F151I	ENST00000322088	NM_014225.5	151	Ttc/Atc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206707	36206707	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	72	1074	0	ENST00000300305.3:c.805G>T	p.Asp269Tyr	p.D269Y	ENST00000300305		269	Gat/Tat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098538	47098538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	42	699	0	ENST00000409792.3:c.6736G>A	p.Gly2246Ser	p.G2246S	ENST00000409792	NM_014159.6	2246	Ggt/Agt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162778	47162778	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	70	422	0	ENST00000409792.3:c.3348del	p.Lys1116AsnfsTer5	p.K1116Nfs*5	ENST00000409792	NM_014159.6	1116	aaA/aa																																																																															
MITF	4286	MSKCC	GRCh37	3	69928438	69928438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	60	812	0	ENST00000352241.4:c.258G>A	p.Met86Ile	p.M86I	ENST00000352241	NM_198159.2	86	atG/atA																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873118	134873118	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	84	759	0	ENST00000398015.3:c.1422G>T	p.Lys474Asn	p.K474N	ENST00000398015	NM_004441.4	474	aaG/aaT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916904	178916905	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	53	503	0	ENST00000263967.3:c.296dup	p.Leu99PhefsTer5	p.L99Ffs*5	ENST00000263967	NM_006218.2	97	-/T																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323979	31323979	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	71	732	0	ENST00000412585.2:c.584A>G	p.Tyr195Cys	p.Y195C	ENST00000412585	NM_005514.6	195	tAc/tGc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522125	157522125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	113	865	3	ENST00000346085.5:c.4397C>T	p.Ala1466Val	p.A1466V	ENST00000346085	NM_020732.3	1466	gCa/gTa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146133	38146133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	131	918	1	ENST00000317025.8:c.3373C>T	p.Pro1125Ser	p.P1125S	ENST00000317025	NM_023034.1	1125	Ccg/Tcg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852245	63852245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			673	628	831	3	ENST00000279873.7:c.3023C>T	p.Ala1008Val	p.A1008V	ENST00000279873	NM_032199.2	1008	gCg/gTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602329	10602329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			592	490	1063	1	ENST00000171111.5:c.1249G>A	p.Gly417Arg	p.G417R	ENST00000171111	NM_203500.1	417	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0046827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	410	792	0	ENST00000269305.4:c.560-2A>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
DDR2	4921	MSKCC	GRCh37	1	162748512	162748512	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			768	124	602	0	ENST00000367921.3:c.2426G>T	p.Gly809Val	p.G809V	ENST00000367921	NM_006182.2	809	gGg/gTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435017	18435017	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0046827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			230	146	208	0	ENST00000266497.5:c.2T>C	p.Met1?	p.M1?	ENST00000266497		1	aTg/aCg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942181	17942181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			487	384	852	0	ENST00000458235.1:c.2834G>A	p.Cys945Tyr	p.C945Y	ENST00000458235	NM_000215.3	945	tGc/tAc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31435925	31435929	+	frameshift_variant	Frame_Shift_Del	DEL	CTAAT	CTAAT	-			P-0046827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			762	221	580	0	ENST00000344624.3:c.2985_2989del	p.Leu996AsnfsTer20	p.L996Nfs*20	ENST00000344624		995	ggATTAGca/ggca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55087020	55087020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	55	494	0	ENST00000275493.2:c.50C>T	p.Ala17Val	p.A17V	ENST00000275493	NM_005228.3	17	gCg/gTg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354437	354437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1441	310	849	1	ENST00000262320.3:c.1121C>T	p.Thr374Met	p.T374M	ENST00000262320	NM_003502.3	374	aCg/aTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967176	134967176	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	156	575	0	ENST00000398015.3:c.2515C>A	p.Gln839Lys	p.Q839K	ENST00000398015	NM_004441.4	839	Cag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111495	8111496	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGA			P-0047489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	30	610	0	ENST00000346208.3:c.982_985dup	p.Arg329MetfsTer24	p.R329Mfs*24	ENST00000346208		327	-/TGGA																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577176	64577177	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTTG			P-0047489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	35	878	0	ENST00000337652.1:c.402_405dup	p.Asp136GlnfsTer50	p.D136Qfs*50	ENST00000337652	NM_130803.2	135	-/CAAG																																																																															
ALK	238	MSKCC	GRCh37	2	29541222	29541222	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	19	558	1	ENST00000389048.3:c.1595C>A	p.Ala532Asp	p.A532D	ENST00000389048	NM_004304.4	532	gCt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420618	49420618	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	191	646	0	ENST00000301067.7:c.15131A>T	p.Asp5044Val	p.D5044V	ENST00000301067	NM_003482.3	5044	gAt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0047542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	14	306	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178197	56178198	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	20	212	0	ENST00000399503.3:c.3171dup	p.His1058ThrfsTer7	p.H1058Tfs*7	ENST00000399503	NM_005921.1	1057	ata/atAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0047543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	115	202	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879885	37879885	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	222	905	0	ENST00000269571.5:c.2180G>C	p.Gly727Ala	p.G727A	ENST00000269571		727	gGa/gCa																																																																															
MDM2	4193	MSKCC	GRCh37	12	69218205	69218205	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	99	254	0	ENST00000462284.1:c.421C>G	p.Gln141Glu	p.Q141E	ENST00000462284	NM_002392.5	141	Caa/Gaa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	581	889	0	ENST00000269571.5:c.2329G>C	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ctg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245733	46245733	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	101	381	0	ENST00000334344.6:c.3827C>A	p.Thr1276Lys	p.T1276K	ENST00000334344	NM_152641.2	1276	aCa/aAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160565	56160565	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	149	215	0	ENST00000399503.3:c.839A>G	p.Gln280Arg	p.Q280R	ENST00000399503	NM_005921.1	280	cAg/cGg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56167802	56167802	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	123	332	0	ENST00000399503.3:c.1368del	p.Thr457GlnfsTer30	p.T457Qfs*30	ENST00000399503	NM_005921.1	456	cTt/ct																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67569238	67569242	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGA	GCAGA	-			P-0047543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	90	329	1	ENST00000274335.5:c.359_363del	p.Glu120ValfsTer5	p.E120Vfs*5	ENST00000274335		119	GCAGAg/g																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371981	55371981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	204	510	0	ENST00000297316.4:c.671C>T	p.Thr224Met	p.T224M	ENST00000297316	NM_022454.3	224	aCg/aTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0047609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	138	334	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0047609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	127	744	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	150	815	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	80	456	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217652	7217653	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0047609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	88	596	0	ENST00000380728.2:c.274_275insTA	p.Lys92IlefsTer18	p.K92Ifs*18	ENST00000380728		92	aaa/aTAaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	234	514	4	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0047318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	720	855	23	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604789	48604789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	124	436	0	ENST00000342988.3:c.1611C>A	p.Asp537Glu	p.D537E	ENST00000342988	NM_005359.5	537	gaC/gaA																																																																															
UPF1	5976	MSKCC	GRCh37	19	18962992	18962992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	271	1036	15	ENST00000262803.5:c.859G>A	p.Glu287Lys	p.E287K	ENST00000262803	NM_002911.3	287	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971015	21971015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	193	472	3	ENST00000304494.5:c.343G>A	p.Val115Met	p.V115M	ENST00000304494	NM_000077.4	115	Gtg/Atg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0047319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	18	168	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653841	89653841	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	31	153	0	ENST00000371953.3:c.139A>T	p.Arg47Trp	p.R47W	ENST00000371953	NM_000314.4	47	Agg/Tgg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47084162	47084162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0047319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	52	188	0	ENST00000409792.3:c.7127T>A	p.Leu2376Ter	p.L2376*	ENST00000409792	NM_014159.6	2376	tTg/tAg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061136	38061202	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTG	TGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTG	-			P-0047509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	424	310	0	ENST00000250448.2:c.787_853del	p.Gln263AlafsTer36	p.Q263Afs*36	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAgc/gc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37649080	37649082	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0047509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	44	453	0	ENST00000447079.4:c.2188_2190del	p.Ile730del	p.I730del	ENST00000447079	NM_015083.1	729	ATT/-																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099247	4099247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	37	823	1	ENST00000262948.5:c.871C>T	p.Pro291Ser	p.P291S	ENST00000262948	NM_030662.3	291	Cct/Tct																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619352	37619354	+	frameshift_variant	Frame_Shift_Del	DEL	GTC	GTC	A			P-0047509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	60	389	1	ENST00000447079.4:c.1028_1030delinsA	p.Ser343LysfsTer7	p.S343Kfs*7	ENST00000447079	NM_015083.1	343	aGTCgg/aAgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0047511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	210	418	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
KDR	3791	MSKCC	GRCh37	4	55976873	55976873	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	250	654	0	ENST00000263923.4:c.1039C>A	p.Arg347Ser	p.R347S	ENST00000263923	NM_002253.2	347	Cgt/Agt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225370818	225370818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	66	432	0	ENST00000264414.4:c.1061G>T	p.Arg354Leu	p.R354L	ENST00000264414	NM_003590.4	354	cGc/cTc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470597	25470597	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	237	772	0	ENST00000264709.3:c.877G>T	p.Gly293Trp	p.G293W	ENST00000264709	NM_175629.2	293	Ggg/Tgg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740163	162740163	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	116	575	0	ENST00000367921.3:c.1365C>A	p.Asn455Lys	p.N455K	ENST00000367921	NM_006182.2	455	aaC/aaA																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857437	9857437	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	165	619	0	ENST00000330684.3:c.3964G>T	p.Gly1322Ter	p.G1322*	ENST00000330684	NM_001134407.1	1322	Gga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857958	9857958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	515	719	0	ENST00000330684.3:c.3443C>A	p.Pro1148Gln	p.P1148Q	ENST00000330684	NM_001134407.1	1148	cCg/cAg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299832	15299832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	194	895	0	ENST00000263388.2:c.1346G>T	p.Arg449Leu	p.R449L	ENST00000263388	NM_000435.2	449	cGc/cTc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156648	55156648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	230	540	0	ENST00000257290.5:c.3049G>T	p.Gly1017Cys	p.G1017C	ENST00000257290	NM_006206.4	1017	Ggc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112177495	112177495	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	109	355	0	ENST00000257430.4:c.6204G>T	p.Met2068Ile	p.M2068I	ENST00000257430	NM_000038.5	2068	atG/atT																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157150548	157150548	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	205	547	0	ENST00000346085.5:c.1730A>T	p.Gln577Leu	p.Q577L	ENST00000346085	NM_020732.3	577	cAg/cTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030493	47030496	+	intron_variant	Intron	DEL	CCCA	CCCA	-			P-0047511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	259	846	0	ENST00000329236.7:c.201+1598_201+1601del		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
TP53	7157	MSKCC	GRCh37	17	7579707	7579707	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	74	771	0	ENST00000269305.4:c.89del	p.Asn30ThrfsTer14	p.N30Tfs*14	ENST00000269305	NM_001126112.2	30	aAc/ac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630804	187630804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	48	736	0	ENST00000441802.2:c.178G>A	p.Gly60Ser	p.G60S	ENST00000441802	NM_005245.3	60	Ggt/Agt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	95	528	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PMS2	5395	MSKCC	GRCh37	7	6042266	6042266	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs587781913		P-0047514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	43	566	0	ENST00000265849.7:c.355G>A	p.Asp119Asn	p.D119N	ENST00000265849	NM_000535.5	119	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577059	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0047514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	288	972	0	ENST00000269305.4:c.879_880del	p.Glu294AlafsTer11	p.E294Afs*11	ENST00000269305	NM_001126112.2	293	ggGGag/ggag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404545	8404545	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	50	266	0	ENST00000356435.5:c.4202C>G	p.Ala1401Gly	p.A1401G	ENST00000356435		1401	gCt/gGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974701	21974876	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	ATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGA	ATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGA	-			P-0047514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	186	560	0	ENST00000304494.5:c.-50_126del		p.*17*	ENST00000304494	NM_000077.4																																																																																	
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042517-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	31	389	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0042517-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			607	51	562	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0042517-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			455	52	450	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971167	21971167	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042517-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			446	24	427	0	ENST00000304494.5:c.191T>C	p.Leu64Pro	p.L64P	ENST00000304494	NM_000077.4	64	cTg/cCg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974776	21974794	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCAGCCAGTCAGCCGAA	GGCCAGCCAGTCAGCCGAA	-			P-0042517-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	7	271	0	ENST00000304494.5:c.33_51del	p.Ser12ArgfsTer8	p.S12Rfs*8	ENST00000304494	NM_000077.4	11	ccTTCGGCTGACTGGCTGGCC/cc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81534602	81534602	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151211603		P-0042517-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	23	305	0	ENST00000298171.2:c.247G>A	p.Val83Ile	p.V83I	ENST00000298171	NM_000369.2	83	Gta/Ata																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859921	151859922	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0042517-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			365	23	402	0	ENST00000262189.6:c.10740_10741del	p.His3580GlnfsTer15	p.H3580Qfs*15	ENST00000262189	NM_170606.2	3580	caCAgt/cagt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			360	127	493	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			359	274	709	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
STK11	6794	MSKCC	GRCh37	19	1222006	1222006	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			201	355	795	1	ENST00000326873.7:c.920+1G>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																																
KIT	3815	MSKCC	GRCh37	4	55602887	55602887	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			236	112	362	0	ENST00000288135.5:c.2597G>A	p.Gly866Glu	p.G866E	ENST00000288135	NM_000222.2	866	gGa/gAa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602822	10602822	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			279	581	1113	1	ENST00000171111.5:c.756G>T	p.Trp252Cys	p.W252C	ENST00000171111	NM_203500.1	252	tgG/tgT																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123256179	123256179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			337	164	577	0	ENST00000358487.5:c.1730G>T	p.Arg577Leu	p.R577L	ENST00000358487	NM_000141.4	577	cGa/cTa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98224270	98224270	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			144	60	335	0	ENST00000331920.6:c.2571T>A	p.Asp857Glu	p.D857E	ENST00000331920	NM_000264.3	857	gaT/gaA																																																																															
AR	367	MSKCC	GRCh37	X	66931343	66931343	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			765	174	695	1	ENST00000374690.3:c.1985T>A	p.Val662Glu	p.V662E	ENST00000374690	NM_000044.3	662	gTg/gAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134240	11134240	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			230	364	778	0	ENST00000344626.4:c.2906A>G	p.His969Arg	p.H969R	ENST00000344626	NM_003072.3	969	cAc/cGc																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599260	28599260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			312	488	1101	0	ENST00000253063.3:c.706G>A	p.Glu236Lys	p.E236K	ENST00000253063	NM_031459.4	236	Gaa/Aaa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118857	115118857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			447	96	552	0	ENST00000257566.3:c.484C>T	p.Arg162Cys	p.R162C	ENST00000257566	NM_016569.3	162	Cgt/Tgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133210931	133210931	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			584	199	773	0	ENST00000320574.5:c.5845G>T	p.Glu1949Ter	p.E1949*	ENST00000320574	NM_006231.2	1949	Gag/Tag																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108268	8108268	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			529	245	956	0	ENST00000585124.1:c.956C>G	p.Ala319Gly	p.A319G	ENST00000585124	NM_004217.3	319	gCc/gGc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313452	30313452	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			595	188	671	0	ENST00000262643.3:c.1052G>T	p.Gly351Val	p.G351V	ENST00000262643	NM_001238.2	351	gGc/gTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223932	36223932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			771	245	1062	4	ENST00000222270.7:c.6482G>A	p.Arg2161His	p.R2161H	ENST00000222270	NM_014727.1	2161	cGc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877396	40877396	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			422	338	696	0	ENST00000373198.4:c.2300C>G	p.Ala767Gly	p.A767G	ENST00000373198	NM_133170.3	767	gCt/gGt																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130595	29130595	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			379	153	727	0	ENST00000328354.6:c.115T>C	p.Ser39Pro	p.S39P	ENST00000328354	NM_007194.3	39	Tcc/Ccc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430723	181430723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			348	397	836	2	ENST00000325404.1:c.575C>T	p.Ala192Val	p.A192V	ENST00000325404	NM_003106.3	192	gCg/gTg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143029297	143029297	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			213	82	327	0	ENST00000262992.4:c.2323G>T	p.Glu775Ter	p.E775*	ENST00000262992	NM_001101669.1	775	Gaa/Taa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149509440	149509440	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			674	213	1036	2	ENST00000261799.4:c.1459C>A	p.Gln487Lys	p.Q487K	ENST00000261799	NM_002609.3	487	Cag/Aag																																																																															
MED12	9968	MSKCC	GRCh37	X	70341543	70341543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			496	758	937	1	ENST00000374080.3:c.978C>A	p.Ser326Arg	p.S326R	ENST00000374080		326	agC/agA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0047174-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			182	113	363	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0047174-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			276	291	963	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999454	100999454	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047174-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			374	130	1201	0	ENST00000325455.5:c.348C>G	p.Asp116Glu	p.D116E	ENST00000325455	NM_001202474.3	116	gaC/gaG																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793343	242793343	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047174-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			333	80	1089	0	ENST00000334409.5:c.734A>T	p.Gln245Leu	p.Q245L	ENST00000334409	NM_005018.2	245	cAg/cTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55266501	55266501	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047174-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			914	143	732	0	ENST00000275493.2:c.2793A>T	p.Glu931Asp	p.E931D	ENST00000275493	NM_005228.3	931	gaA/gaT																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572604	64572604	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	293	794	1	ENST00000337652.1:c.1267G>T	p.Asp423Tyr	p.D423Y	ENST00000337652	NM_130803.2	423	Gac/Tac																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115898	8115899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047376-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			575	104	508	0	ENST00000346208.3:c.1245dup	p.Leu416AlafsTer91	p.L416Afs*91	ENST00000346208		415	atg/atGg																																																																															
EED	8726	MSKCC	GRCh37	11	85979544	85979544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047376-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			456	36	351	0	ENST00000263360.6:c.907G>A	p.Asp303Asn	p.D303N	ENST00000263360	NM_003797.3	303	Gac/Aac																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10260254	10260254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047376-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			573	146	586	0	ENST00000340748.4:c.2413C>A	p.Leu805Ile	p.L805I	ENST00000340748		805	Ctc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0047377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	187	793	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	66	412	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0047377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	61	452	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
ERG	2078	MSKCC	GRCh37	21	39795388	39795388	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	74	842	0	ENST00000288319.7:c.332A>T	p.Lys111Met	p.K111M	ENST00000288319	NM_182918.3	111	aAg/aTg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188187	32188187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	350	607	0	ENST00000375023.3:c.1154G>A	p.Arg385His	p.R385H	ENST00000375023	NM_004557.3	385	cGc/cAc																																																																															
TEK	7010	MSKCC	GRCh37	9	27168576	27168576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	134	533	0	ENST00000380036.4:c.448G>A	p.Glu150Lys	p.E150K	ENST00000380036	NM_000459.3	150	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68835697	68835697	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	448	696	0	ENST00000261769.5:c.289delC	p.His97IlefsTer20	p.H97Ifs*20	ENST00000261769	NM_004360.3	96	atC/at																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0047392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	155	652	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0047392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	421	930	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0047392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	201	361	0	ENST00000257430.4:c.4037C>G	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tGa																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0047392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	74	381	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0047392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	293	505	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31394052	31394052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	135	574	2	ENST00000328111.2:c.2339C>T	p.Ser780Leu	p.S780L	ENST00000328111	NM_006892.3	780	tCg/tTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639237	3639237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1236	479	1196	0	ENST00000294008.3:c.4402C>T	p.Arg1468Cys	p.R1468C	ENST00000294008	NM_032444.2	1468	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	106	468	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	105	317	0				ENST00000310581	NM_198253.2																																																																																	
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	102	514	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	73	375	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81392143	81392143	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	66	337	0	ENST00000222390.5:c.134C>A	p.Ser45Ter	p.S45*	ENST00000222390	NM_000601.4	45	tCa/tAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912198	114912198	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	187	635	0	ENST00000543371.1:c.1268A>G	p.Tyr423Cys	p.Y423C	ENST00000543371	NM_001198531.1	423	tAt/tGt																																																																															
ATM	472	MSKCC	GRCh37	11	108122691	108122691	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	100	468	0	ENST00000278616.4:c.1735T>C	p.Trp579Arg	p.W579R	ENST00000278616	NM_000051.3	579	Tgg/Cgg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39623766	39623767	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	115	465	0	ENST00000262039.4:c.2174dup	p.Tyr725Ter	p.Y725*	ENST00000262039	NM_002647.2	725	tac/tAac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212589881	212589881	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	144	651	0	ENST00000342788.4:c.661T>A	p.Cys221Ser	p.C221S	ENST00000342788	NM_005235.2	221	Tgc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112137018	112137018	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	102	493	0	ENST00000257430.4:c.772del	p.Glu258SerfsTer35	p.E258Sfs*35	ENST00000257430	NM_000038.5	258	Gag/ag																																																																															
APC	324	MSKCC	GRCh37	5	112173510	112173510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	82	403	0	ENST00000257430.4:c.2219C>T	p.Ala740Val	p.A740V	ENST00000257430	NM_000038.5	740	gCc/gTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268105	55268105	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	190	858	0	ENST00000275493.2:c.2945A>G	p.Gln982Arg	p.Q982R	ENST00000275493	NM_005228.3	982	cAg/cGg																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22008928	22008928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	185	671	1	ENST00000276925.6:c.25C>T	p.Pro9Ser	p.P9S	ENST00000276925	NM_004936.3	9	Ccc/Tcc																																																																															
AR	367	MSKCC	GRCh37	X	66941715	66941715	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	177	757	0	ENST00000374690.3:c.2359C>T	p.Arg787Ter	p.R787*	ENST00000374690	NM_000044.3	787	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0047395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	72	278	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043377	180043377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	175	639	4	ENST00000261937.6:c.3209G>A	p.Arg1070His	p.R1070H	ENST00000261937	NM_182925.4	1070	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0047395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	158	607	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198274568	198274568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	167	595	0	ENST00000335508.6:c.830C>T	p.Ala277Val	p.A277V	ENST00000335508	NM_012433.2	277	gCg/gTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920450	114920450	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0047395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	129	547	0	ENST00000543371.1:c.1391G>A	p.Arg464Lys	p.R464K	ENST00000543371	NM_001198531.1	464	aGg/aAg																																																																															
WT1	7490	MSKCC	GRCh37	11	32456366	32456366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	176	714	0	ENST00000332351.3:c.526C>T	p.Arg176Cys	p.R176C	ENST00000332351	NM_024426.4	176	Cgc/Tgc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267295	41267295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	88	379	1	ENST00000349496.5:c.879C>A	p.Phe293Leu	p.F293L	ENST00000349496	NM_001904.3	293	ttC/ttA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0047431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	62	345	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0047431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	15	303	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0047431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	161	654	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0047431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	184	704	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0047431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	143	642	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099479	27099479	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0047431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	48	320	0	ENST00000324856.7:c.3715+1G>A		p.X1239_splice	ENST00000324856	NM_006015.4	1239																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48593466	48593466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	36	296	0	ENST00000342988.3:c.1217C>T	p.Ala406Val	p.A406V	ENST00000342988	NM_005359.5	406	gCg/gTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89816306	89816306	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	51	402	0	ENST00000389301.3:c.3071T>C	p.Met1024Thr	p.M1024T	ENST00000389301	NM_000135.2	1024	aTg/aCg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217080	2217080	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	68	667	0	ENST00000398665.3:c.2535del	p.Ser845ArgfsTer6	p.S845Rfs*6	ENST00000398665	NM_032482.2	845	agC/ag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024254	31024254	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	34	498	0	ENST00000375687.4:c.3739C>G	p.Arg1247Gly	p.R1247G	ENST00000375687	NM_015338.5	1247	Cgt/Ggt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261326	16261326	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	172	431	0	ENST00000375759.3:c.8591C>G	p.Ser2864Trp	p.S2864W	ENST00000375759	NM_015001.2	2864	tCg/tGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0047433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	354	538	0	ENST00000269305.4:c.559+2T>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
IL7R	3575	MSKCC	GRCh37	5	35876536	35876536	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0047433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	139	386	0	ENST00000303115.3:c.1328C>G	p.Ser443Ter	p.S443*	ENST00000303115	NM_002185.3	443	tCa/tGa																																																																															
NF1	4763	MSKCC	GRCh37	17	29486049	29486049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	78	194	0	ENST00000358273.4:c.226G>A	p.Glu76Lys	p.E76K	ENST00000358273	NM_001042492.2	76	Gaa/Aaa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211437	36211437	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	1492	692	0	ENST00000222270.7:c.1188G>C	p.Lys396Asn	p.K396N	ENST00000222270	NM_014727.1	396	aaG/aaC																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467039	25467039	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	181	504	0	ENST00000264709.3:c.1836C>G	p.Asn612Lys	p.N612K	ENST00000264709	NM_175629.2	612	aaC/aaG																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459493	50459493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	82	173	0	ENST00000331340.3:c.782C>T	p.Ser261Phe	p.S261F	ENST00000331340	NM_006060.4	261	tCt/tTt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627664	37627664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	84	541	0	ENST00000447079.4:c.1580del	p.Pro527HisfsTer83	p.P527Hfs*83	ENST00000447079	NM_015083.1	527	Cca/ca																																																																															
RRAS	6237	MSKCC	GRCh37	19	50139938	50139938	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	205	773	0	ENST00000246792.3:c.391G>T	p.Asp131Tyr	p.D131Y	ENST00000246792	NM_006270.3	131	Gac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112177280	112177280	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	16	274	0	ENST00000257430.4:c.5989G>T	p.Gly1997Ter	p.G1997*	ENST00000257430	NM_000038.5	1997	Gga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0047446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	648	476	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138453531	138453531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	166	269	0	ENST00000289153.2:c.917G>A	p.Arg306Gln	p.R306Q	ENST00000289153	NM_006219.2	306	cGa/cAa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484206	8484206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	172	409	0	ENST00000356435.5:c.3326G>A	p.Arg1109His	p.R1109H	ENST00000356435		1109	cGt/cAt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729259	41729259	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	251	321	0	ENST00000242208.4:c.1270G>T	p.Gly424Trp	p.G424W	ENST00000242208	NM_002192.2	424	Ggg/Tgg																																																																															
TET1	80312	MSKCC	GRCh37	10	70450876	70450876	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	215	466	0	ENST00000373644.4:c.5716G>T	p.Glu1906Ter	p.E1906*	ENST00000373644	NM_030625.2	1906	Gaa/Taa																																																																															
YAP1	10413	MSKCC	GRCh37	11	102100600	102100600	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	169	334	0	ENST00000282441.5:c.1444A>G	p.Ile482Val	p.I482V	ENST00000282441	NM_001130145.2	482	Atc/Gtc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3645673	3645673	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	534	672	0	ENST00000294008.3:c.1946G>T	p.Gly649Val	p.G649V	ENST00000294008	NM_032444.2	649	gGc/gTc																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30309634	30309634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	610	540	0	ENST00000307677.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000307677	NM_138578.1	130	Ctc/Ttc																																																																															
KIT	3815	MSKCC	GRCh37	4	55564449	55564449	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0047446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2806	203	297	0	ENST00000288135.5:c.338-1G>T		p.X113_splice	ENST00000288135	NM_000222.2	113																																																																																
AMER1	139285	MSKCC	GRCh37	X	63411396	63411396	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	276	366	0	ENST00000330258.3:c.1771A>G	p.Arg591Gly	p.R591G	ENST00000330258	NM_152424.3	591	Agg/Ggg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0047449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	354	796	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786038	135786038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1280	113	750	1	ENST00000298552.3:c.1183C>T	p.Pro395Ser	p.P395S	ENST00000298552	NM_001162426.1	395	Cct/Tct																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786446	135786446	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	70	502	0	ENST00000298552.3:c.1084C>G	p.Pro362Ala	p.P362A	ENST00000298552	NM_001162426.1	362	Cct/Gct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	601	373	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	318	706	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880257	37880257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	179	453	0	ENST00000269571.5:c.2301C>G	p.Ile767Met	p.I767M	ENST00000269571		767	atC/atG																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552822		P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	281	564	1	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																															
TERT	7015	MSKCC	GRCh37	5	1293875	1293875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1737	335	1039	0	ENST00000310581.5:c.1126C>T	p.Pro376Ser	p.P376S	ENST00000310581	NM_198253.2	376	Ccc/Tcc																																																																															
SETD8	387893	MSKCC	GRCh37	12	123874031	123874031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	10	29	0	ENST00000330479.4:c.62C>T	p.Ala21Val	p.A21V	ENST00000330479	NM_020382.3	21	gCg/gTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42042214	42042214	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	167	401	0	ENST00000219905.7:c.6409G>T	p.Glu2137Ter	p.E2137*	ENST00000219905	NM_001164273.1	2137	Gaa/Taa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46254583	46254583	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	318	349	0	ENST00000334344.6:c.4774-1G>T		p.X1592_splice	ENST00000334344	NM_152641.2	1592																																																																																
RNF43	54894	MSKCC	GRCh37	17	56436101	56436101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	499	660	0	ENST00000407977.2:c.1036C>T	p.Pro346Ser	p.P346S	ENST00000407977		346	Ccc/Tcc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18974986	18974986	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	169	500	0	ENST00000262803.5:c.2783G>T	p.Arg928Leu	p.R928L	ENST00000262803	NM_002911.3	928	cGc/cTc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867374	45867374	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	1205	854	0	ENST00000391945.4:c.819C>G	p.Ile273Met	p.I273M	ENST00000391945	NM_000400.3	273	atC/atG																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045504	47045504	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	265	322	0	ENST00000329236.7:c.2237A>T	p.Lys746Met	p.K746M	ENST00000329236	NM_001204466.1	746	aAg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175240	112175240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	63	220	0	ENST00000257430.4:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000257430	NM_000038.5	1317	Gaa/Taa																																																																															
B2M	567	MSKCC	GRCh37	15	45003749	45003749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	73	505	0	ENST00000558401.1:c.5C>T	p.Ser2Phe	p.S2F	ENST00000558401	NM_004048.2	2	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578393	7578395	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0047452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	76	731	0	ENST00000269305.4:c.535_537del	p.His179del	p.H179del	ENST00000269305	NM_001126112.2	179	CAT/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577508	7577510	+	frameshift_variant	Frame_Shift_Del	DEL	TCC	TCC	GG			P-0047452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	147	601	0	ENST00000269305.4:c.771_773delinsCC	p.Glu258GlnfsTer87	p.E258Qfs*87	ENST00000269305	NM_001126112.2	257	ctGGAa/ctCCa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0047455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	88	303	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46125006	46125013	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAAGAA	GAGAAGAA	-			P-0047455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	43	210	0	ENST00000334344.6:c.193_200del	p.Glu65SerfsTer7	p.E65Sfs*7	ENST00000334344	NM_152641.2	65	GAGAAGAAt/t																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0047459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	44	330	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11172458	11172458	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0047459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	56	672	0	ENST00000344626.4:c.4912-2A>C		p.X1638_splice	ENST00000344626	NM_003072.3	1638																																																																																
MED12	9968	MSKCC	GRCh37	X	70338641	70338641	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	88	376	0	ENST00000374080.3:c.40del	p.Leu14Ter	p.L14*	ENST00000374080		13	Ccc/cc																																																																															
POLE	5426	MSKCC	GRCh37	12	133253176	133253176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	37	530	0	ENST00000320574.5:c.865G>A	p.Glu289Lys	p.E289K	ENST00000320574	NM_006231.2	289	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262160	16262160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	28	322	0	ENST00000375759.3:c.9425C>T	p.Pro3142Leu	p.P3142L	ENST00000375759	NM_015001.2	3142	cCa/cTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106559	27106559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	53	805	1	ENST00000324856.7:c.6170G>A	p.Arg2057Gln	p.R2057Q	ENST00000324856	NM_006015.4	2057	cGg/cAg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137205	64137205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	43	852	2	ENST00000334205.4:c.1637C>A	p.Pro546Gln	p.P546Q	ENST00000334205	NM_003942.2	546	cCg/cAg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52668625	52668625	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	28	353	0	ENST00000394830.3:c.1294C>T	p.Gln432Ter	p.Q432*	ENST00000394830	NM_018313.4	432	Cag/Tag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169195	32169195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	46	850	1	ENST00000375023.3:c.3838G>A	p.Asp1280Asn	p.D1280N	ENST00000375023	NM_004557.3	1280	Gat/Aat																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509387	106509387	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	367	578	0	ENST00000359195.3:c.1381C>G	p.Leu461Val	p.L461V	ENST00000359195	NM_002649.2	461	Ctc/Gtc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0047464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	30	242	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578264	7578268	+	frameshift_variant	Frame_Shift_Del	DEL	GATAA	GATAA	-			P-0047464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	39	589	0	ENST00000269305.4:c.581_585delTTATC	p.Leu194ProfsTer13	p.L194Pfs*13	ENST00000269305	NM_001126112.2	194	cTTATC/c																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5219364	5219364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	54	715	0	ENST00000357368.4:c.3880G>A	p.Val1294Ile	p.V1294I	ENST00000357368	NM_002850.3	1294	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	136	668	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	232	484	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097624	11097625	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1165714406		P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	162	993	1	ENST00000344626.4:c.810dup	p.Gly271ArgfsTer16	p.G271Rfs*16	ENST00000344626	NM_003072.3	268	-/C																																																																															
CUL3	8452	MSKCC	GRCh37	2	225339071	225339071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	36	282	0	ENST00000264414.4:c.2198G>T	p.Arg733Leu	p.R733L	ENST00000264414	NM_003590.4	733	cGa/cTa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156834543	156834543	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	319	825	0	ENST00000524377.1:c.311G>T	p.Arg104Leu	p.R104L	ENST00000524377	NM_002529.3	104	cGt/cTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445091	49445091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	186	589	1	ENST00000301067.7:c.2375C>T	p.Ala792Val	p.A792V	ENST00000301067	NM_003482.3	792	gCt/gTt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727516	88727516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	82	439	0	ENST00000360948.2:c.263G>T	p.Trp88Leu	p.W88L	ENST00000360948	NM_001012338.2	88	tGg/tTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29552122	29552140	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAGTTCCTGTCACTTTC	AGAAGTTCCTGTCACTTTC	-			P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	17	190	0	ENST00000358273.4:c.1855_1873del	p.Arg619SerfsTer6	p.R619Sfs*6	ENST00000358273	NM_001042492.2	619	AGAAGTTCCTGTCACTTTCtc/tc																																																																															
NF1	4763	MSKCC	GRCh37	17	29560127	29560127	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs146641724		P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	51	273	0	ENST00000358273.4:c.3604G>T	p.Ala1202Ser	p.A1202S	ENST00000358273	NM_001042492.2	1202	Gct/Tct																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212495222	212495222	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	31	402	0	ENST00000342788.4:c.2044A>G	p.Lys682Glu	p.K682E	ENST00000342788	NM_005235.2	682	Aag/Gag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180038335	180038335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	43	630	0	ENST00000261937.6:c.3682G>T	p.Ala1228Ser	p.A1228S	ENST00000261937	NM_182925.4	1228	Gcc/Tcc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450237	50450237	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	37	390	0	ENST00000331340.3:c.422-1G>T		p.X141_splice	ENST00000331340	NM_006060.4	141																																																																																
BCOR	54880	MSKCC	GRCh37	X	39932470	39932470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	68	726	0	ENST00000378444.4:c.2129G>T	p.Arg710Leu	p.R710L	ENST00000378444	NM_001123385.1	710	cGt/cTt																																																																															
ATM	472	MSKCC	GRCh37	11	108158357	108158357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047468-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	62	341	0	ENST00000278616.4:c.4024G>A	p.Glu1342Lys	p.E1342K	ENST00000278616	NM_000051.3	1342	Gag/Aag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487160	56487160	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047468-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			350	190	422	0	ENST00000267101.3:c.1306T>A	p.Leu436Met	p.L436M	ENST00000267101	NM_001982.3	436	Ttg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047468-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			614	247	934	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																															
FLCN	201163	MSKCC	GRCh37	17	17118613	17118614	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AT			P-0047468-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			355	150	537	2	ENST00000285071.4:c.1317_1318delinsAT	p.Glu440Ter	p.E440*	ENST00000285071	NM_144997.5	439	gtGGag/gtATag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223162	5223162	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs771623625		P-0047468-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			674	272	1163	0	ENST00000357368.4:c.2641C>G	p.Leu881Val	p.L881V	ENST00000357368	NM_002850.3	881	Ctg/Gtg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399543	139399543	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047468-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			532	249	899	0	ENST00000277541.6:c.4600C>G	p.Gln1534Glu	p.Q1534E	ENST00000277541	NM_017617.3	1534	Cag/Gag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44966768	44966768	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047468-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			166	56	234	0	ENST00000377967.4:c.3992G>T	p.Cys1331Phe	p.C1331F	ENST00000377967	NM_021140.2	1331	tGt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	588	396	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MGA	23269	MSKCC	GRCh37	15	41961399	41961399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	71	457	1	ENST00000219905.7:c.307C>T	p.Arg103Cys	p.R103C	ENST00000219905	NM_001164273.1	103	Cgc/Tgc																																																																															
MED12	9968	MSKCC	GRCh37	X	70347811	70347811	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	69	614	0	ENST00000374080.3:c.3050G>T	p.Trp1017Leu	p.W1017L	ENST00000374080		1017	tGg/tTg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998388	100998388	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	47	203	0	ENST00000325455.5:c.1414C>A	p.Gln472Lys	p.Q472K	ENST00000325455	NM_001202474.3	472	Cag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061517	38061519	+	inframe_deletion	In_Frame_Del	DEL	CGC	CGC	-			P-0047496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	61	504	3	ENST00000250448.2:c.470_472del	p.Gly157del	p.G157del	ENST00000250448	NM_004496.3	157	gGCGac/gac																																																																															
MGA	23269	MSKCC	GRCh37	15	42058498	42058498	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	52	402	0	ENST00000219905.7:c.8218C>G	p.Gln2740Glu	p.Q2740E	ENST00000219905	NM_001164273.1	2740	Caa/Gaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467556	66467556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	48	333	0	ENST00000273854.3:c.713G>T	p.Arg238Leu	p.R238L	ENST00000273854	NM_004439.5	238	cGa/cTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509993	187509993	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	81	467	0	ENST00000441802.2:c.13520G>T	p.Gly4507Val	p.G4507V	ENST00000441802	NM_005245.3	4507	gGt/gTt																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946168	13946168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	96	641	0	ENST00000405192.2:c.928G>A	p.Gly310Arg	p.G310R	ENST00000405192	NM_001163147.1	310	Gga/Aga																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577205	64577205	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	144	823	0	ENST00000337652.1:c.377G>A	p.Trp126Ter	p.W126*	ENST00000337652	NM_130803.2	126	tGg/tAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76875981	76875984	+	frameshift_variant	Frame_Shift_Del	DEL	ACAA	ACAA	-			P-0047499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	26	171	0	ENST00000373344.5:c.5151_5154del	p.Cys1718MetfsTer6	p.C1718Mfs*6	ENST00000373344	NM_000489.3	1717	gtTTGT/gt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161751	47161751	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	55	346	0	ENST00000409792.3:c.4375C>T	p.Arg1459Ter	p.R1459*	ENST00000409792	NM_014159.6	1459	Cga/Tga																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982975	201982982	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGGGAG	TGTGGGAG	-			P-0047499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	172	815	0	ENST00000359651.3:c.825_832del	p.Trp276HisfsTer22	p.W276Hfs*22	ENST00000359651		275	cTGTGGGAG/c																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572212	64572242	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGCTTCCTCGCCCCACGGCTCCTCGGCCT	CGGGCTTCCTCGCCCCACGGCTCCTCGGCCT	-			P-0047499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	54	701	0	ENST00000337652.1:c.1412_1442del	p.Glu471GlyfsTer83	p.E471Gfs*83	ENST00000337652	NM_130803.2	471	gAGGCCGAGGAGCCGTGGGGCGAGGAAGCCCGg/gg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577298	64577305	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGTGAA	GCGGTGAA	-			P-0047499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	46	861	0	ENST00000337652.1:c.277_284del	p.Phe93ProfsTer21	p.F93Pfs*21	ENST00000337652	NM_130803.2	93	TTCACCGCc/c																																																																															
ATRX	546	MSKCC	GRCh37	X	76891468	76891484	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGTTTCTTCATCTTC	TTGGTTTCTTCATCTTC	-			P-0047499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	144	346	0	ENST00000373344.5:c.4621_4637del	p.Glu1541ArgfsTer8	p.E1541Rfs*8	ENST00000373344	NM_000489.3	1541	GAAGATGAAGAAACCAAa/a																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	48	532	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120502076	120502076	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	27	455	0	ENST00000256646.2:c.1965C>G	p.Ile655Met	p.I655M	ENST00000256646	NM_024408.3	655	atC/atG																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057988	27057988	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	156	732	0	ENST00000324856.7:c.1696C>T	p.Gln566Ter	p.Q566*	ENST00000324856	NM_006015.4	566	Cag/Tag																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197187	26197187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	114	594	0	ENST00000356476.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000356476		98	Gag/Aag																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38953090	38953090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	31	210	0	ENST00000357387.3:c.2894G>A	p.Arg965Lys	p.R965K	ENST00000357387	NM_152756.3	965	aGa/aAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0047559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	209	502	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	120	333	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0047561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	206	786	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971066	21971067	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0047561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	146	726	0	ENST00000304494.5:c.291dup	p.His98AlafsTer22	p.H98Afs*22	ENST00000304494	NM_000077.4	97	-/G																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	85	286	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101057	41101057	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	177	632	0	ENST00000373198.4:c.1299G>T	p.Gln433His	p.Q433H	ENST00000373198	NM_133170.3	433	caG/caT																																																																															
DDR2	4921	MSKCC	GRCh37	1	162741955	162741955	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	231	390	0	ENST00000367921.3:c.1646C>A	p.Ser549Ter	p.S549*	ENST00000367921	NM_006182.2	549	tCa/tAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434694	49434694	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	137	939	1	ENST00000301067.7:c.6859G>T	p.Val2287Leu	p.V2287L	ENST00000301067	NM_003482.3	2287	Gtg/Ttg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109776	115109776	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	133	726	1	ENST00000257566.3:c.2102C>A	p.Ser701Tyr	p.S701Y	ENST00000257566	NM_016569.3	701	tCc/tAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29685585	29685585	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	69	347	0	ENST00000358273.4:c.8058G>C	p.Gln2686His	p.Q2686H	ENST00000358273	NM_001042492.2	2686	caG/caC																																																																															
STK11	6794	MSKCC	GRCh37	19	1221295	1221299	+	frameshift_variant	Frame_Shift_Del	DEL	CCATC	CCATC	-			P-0047564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	212	663	0	ENST00000326873.7:c.820_824del	p.Ile274GlyfsTer9	p.I274Gfs*9	ENST00000326873	NM_000455.4	273	gCCATC/g																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610550	10610550	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	273	859	0	ENST00000171111.5:c.160T>G	p.Tyr54Asp	p.Y54D	ENST00000171111	NM_203500.1	54	Tac/Gac																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872497	136872497	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	106	225	0	ENST00000241393.3:c.1001G>T	p.Arg334Leu	p.R334L	ENST00000241393	NM_003467.2	334	cGa/cTa																																																																															
KDR	3791	MSKCC	GRCh37	4	55946181	55946181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	114	332	0	ENST00000263923.4:c.3998G>A	p.Gly1333Glu	p.G1333E	ENST00000263923	NM_002253.2	1333	gGa/gAa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033177	69033177	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	46	297	0	ENST00000288368.4:c.3617C>G	p.Pro1206Arg	p.P1206R	ENST00000288368	NM_024870.2	1206	cCa/cGa																																																																															
RHOA	387	MSKCC	GRCh37	3	49413010	49413010	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519952		P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	17	452	1	ENST00000418115.1:c.13C>T	p.Arg5Trp	p.R5W	ENST00000418115	NM_001664.2	5	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	140	647	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	42	643	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	43	248	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533905	63533905	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	14	506	1	ENST00000307078.5:c.1249delG	p.Ala417ArgfsTer41	p.A417Rfs*41	ENST00000307078	NM_004655.3	417	Gcg/cg																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349090	11349090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	40	366	0	ENST00000332029.2:c.246del	p.Leu84Ter	p.L84*	ENST00000332029	NM_003745.1	82	ggG/gg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	34	733	4	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911116	29911116	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	38	899	0	ENST00000376809.5:c.415C>T	p.Gln139Ter	p.Q139*	ENST00000376809	NM_002116.7	139	Cag/Tag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346158	89346158	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	12	360	0	ENST00000301030.4:c.6792del	p.Ala2265ProfsTer72	p.A2265Pfs*72	ENST00000301030	NM_001256183.1	2264	ccC/cc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	55	456	0	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771831816		P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	23	435	0	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233090	69233090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	16	216	1	ENST00000462284.1:c.961delC	p.Leu321PhefsTer52	p.L321Ffs*52	ENST00000462284	NM_002392.5	319	Ccc/cc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713414	40713414	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	22	647	1	ENST00000373198.4:c.4101del	p.Ser1368ProfsTer31	p.S1368Pfs*31	ENST00000373198	NM_133170.3	1367	ccC/cc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45864886	45864886	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200043231		P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	29	720	1	ENST00000391945.4:c.1133G>A	p.Arg378His	p.R378H	ENST00000391945	NM_000400.3	378	cGc/cAc																																																																															
PGR	5241	MSKCC	GRCh37	11	100999560	100999560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	19	825	1	ENST00000325455.5:c.242C>T	p.Ser81Leu	p.S81L	ENST00000325455	NM_001202474.3	81	tCg/tTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42798450	42798450	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142012810		P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	26	619	0	ENST00000575354.2:c.4321C>T	p.Arg1441Cys	p.R1441C	ENST00000575354	NM_015125.3	1441	Cgt/Tgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133225574	133225574	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	13	643	0	ENST00000320574.5:c.4090del	p.Arg1364ValfsTer5	p.R1364Vfs*5	ENST00000320574	NM_006231.2	1364	Cgt/gt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	26	816	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138461508	138461508	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	10	380	2	ENST00000289153.2:c.513G>A	p.Trp171Ter	p.W171*	ENST00000289153	NM_006219.2	171	tgG/tgA																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	17	360	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746075	162746075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	14	261	0	ENST00000367921.3:c.2198G>A	p.Arg733Lys	p.R733K	ENST00000367921	NM_006182.2	733	aGg/aAg																																																																															
TEK	7010	MSKCC	GRCh37	9	27158026	27158026	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	12	451	0	ENST00000380036.4:c.255del	p.Val86LeufsTer31	p.V86Lfs*31	ENST00000380036	NM_000459.3	84	Aaa/aa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753452	42753452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	48	838	3	ENST00000222329.4:c.812C>T	p.Thr271Met	p.T271M	ENST00000222329	NM_006494.2	271	aCg/aTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36215621	36215621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	26	694	0	ENST00000222270.7:c.3418C>T	p.Arg1140Cys	p.R1140C	ENST00000222270	NM_014727.1	1140	Cgc/Tgc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141595382	141595382	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	15	557	0	ENST00000220592.5:c.51del	p.Ile18SerfsTer121	p.I18Sfs*121	ENST00000220592	NM_012154.3	17	ccC/cc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324221	31324221	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	18	622	0	ENST00000412585.2:c.344-2A>G		p.X115_splice	ENST00000412585	NM_005514.6	115																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15271919	15271919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	12	919	1	ENST00000263388.2:c.6520C>T	p.Arg2174Trp	p.R2174W	ENST00000263388	NM_000435.2	2174	Cgg/Tgg																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152861563	152861563	+	synonymous_variant	Silent	SNP	G	G	A	rs139660436		P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	16	610	0	ENST00000406277.2:c.189C>T	p.Asp63=	p.D63=	ENST00000406277	NM_152274.4	63	gaC/gaT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600036	10600036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	32	632	0	ENST00000171111.5:c.1540G>A	p.Val514Ile	p.V514I	ENST00000171111	NM_203500.1	514	Gtc/Atc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9778839	9778839	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143521812		P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	39	644	1	ENST00000377346.4:c.1108G>A	p.Val370Met	p.V370M	ENST00000377346	NM_005026.3	370	Gtg/Atg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484606	57484606	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	26	409	0	ENST00000371085.3:c.690A>T	p.Glu230Asp	p.E230D	ENST00000371085	NM_000516.4	230	gaA/gaT																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261154	16261154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	28	360	3	ENST00000375759.3:c.8419C>T	p.Arg2807Cys	p.R2807C	ENST00000375759	NM_015001.2	2807	Cgt/Tgt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246126	46246126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	13	248	0	ENST00000334344.6:c.4220C>T	p.Ala1407Val	p.A1407V	ENST00000334344	NM_152641.2	1407	gCc/gTc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43762168	43762168	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	17	572	0	ENST00000382044.4:c.1277del	p.Pro426LeufsTer65	p.P426Lfs*65	ENST00000382044	NM_001141980.1	426	cCt/ct																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43771659	43771659	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	20	446	1	ENST00000382044.4:c.724C>A	p.Pro242Thr	p.P242T	ENST00000382044	NM_001141980.1	242	Cct/Act																																																																															
BRCA1	672	MSKCC	GRCh37	17	41215920	41215920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	14	349	0	ENST00000357654.3:c.5123C>T	p.Ala1708Val	p.A1708V	ENST00000357654	NM_007294.3	1708	gCg/gTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202131238	202131238	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	11	259	0	ENST00000358485.4:c.206T>C	p.Ile69Thr	p.I69T	ENST00000358485	NM_001080125.1	69	aTt/aCt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57466785	57466785	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	13	104	0	ENST00000371085.3:c.4G>T	p.Gly2Cys	p.G2C	ENST00000371085	NM_000516.4	2	Ggc/Tgc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562747	176562747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	27	359	1	ENST00000439151.2:c.643C>T	p.Pro215Ser	p.P215S	ENST00000439151	NM_022455.4	215	Cca/Tca																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056312	180056312	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	11	754	1	ENST00000261937.6:c.932A>C	p.Lys311Thr	p.K311T	ENST00000261937	NM_182925.4	311	aAg/aCg																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271491	26271491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	77	453	0	ENST00000305910.3:c.122G>A	p.Arg41His	p.R41H	ENST00000305910	NM_003534.2	41	cGc/cAc																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778069	27778069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	69	546	0	ENST00000369163.2:c.218G>A	p.Arg73His	p.R73H	ENST00000369163	NM_003536.2	73	cGt/cAt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165266	32165266	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	35	809	0	ENST00000375023.3:c.4862A>G	p.Asp1621Gly	p.D1621G	ENST00000375023	NM_004557.3	1621	gAt/gGt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570289	87570289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	11	526	0	ENST00000277120.3:c.2029G>A	p.Ala677Thr	p.A677T	ENST00000277120		677	Gcc/Acc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411777	63411777	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	12	628	0	ENST00000330258.3:c.1390G>C	p.Ala464Pro	p.A464P	ENST00000330258	NM_152424.3	464	Gcc/Ccc																																																																															
AR	367	MSKCC	GRCh37	X	66766114	66766114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	20	609	0	ENST00000374690.3:c.1126C>A	p.Pro376Thr	p.P376T	ENST00000374690	NM_000044.3	376	Ccc/Acc																																																																															
ATRX	546	MSKCC	GRCh37	X	76777820	76777820	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	20	424	0	ENST00000373344.5:c.6896del	p.Pro2299LeufsTer21	p.P2299Lfs*21	ENST00000373344	NM_000489.3	2299	cCt/ct																																																																															
MALT1	10892	MSKCC	GRCh37	18	56376756	56376756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	24	339	0	ENST00000348428.3:c.796C>A	p.Pro266Thr	p.P266T	ENST00000348428	NM_006785.3	266	Cca/Aca																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228280	53228280	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	23	367	0	ENST00000375401.3:c.2122A>T	p.Ile708Phe	p.I708F	ENST00000375401	NM_004187.3	708	Atc/Ttc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528075	157528075	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	156	618	0	ENST00000346085.5:c.5800A>G	p.Ile1934Val	p.I1934V	ENST00000346085	NM_020732.3	1934	Atc/Gtc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155695	56155695	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	110	418	0	ENST00000399503.3:c.789del	p.Lys263AsnfsTer7	p.K263Nfs*7	ENST00000399503	NM_005921.1	263	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175882	112175890	+	frameshift_variant	Frame_Shift_Del	DEL	AATGACAAT	AATGACAAT	G			P-0047288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	49	264	0	ENST00000257430.4:c.4591_4599delinsG	p.Asn1531GlyfsTer3	p.N1531Gfs*3	ENST00000257430	NM_000038.5	1531	AATGACAAT/G																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78433847	78433848	+	splice_donor_variant	Splice_Site	DEL	AC	AC	-			P-0047289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	41	313	1	ENST00000370768.2:c.250+1_250+2del		p.X84_splice	ENST00000370768	NM_003902.3	84																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48591901	48591901	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	64	458	0	ENST00000342988.3:c.1064A>T	p.Asp355Val	p.D355V	ENST00000342988	NM_005359.5	355	gAc/gTc																																																																															
TET2	54790	MSKCC	GRCh37	4	106156037	106156037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	98	326	0	ENST00000380013.4:c.938C>T	p.Thr313Ile	p.T313I	ENST00000380013	NM_001127208.2	313	aCc/aTc																																																																															
SYK	6850	MSKCC	GRCh37	9	93641096	93641096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	62	554	0	ENST00000375746.1:c.1442G>A	p.Gly481Asp	p.G481D	ENST00000375746	NM_001174167.1	481	gGc/gAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932447	39932447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	33	377	0	ENST00000378444.4:c.2152G>A	p.Asp718Asn	p.D718N	ENST00000378444	NM_001123385.1	718	Gat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398285	+	missense_variant	Missense_Mutation	ONP	CACC	CACC	AACA			P-0047289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	169	448	0	ENST00000256078.4:c.34_37delinsTGTT	p.Gly12_Gly13delinsCysCys	p.G12_G13delinsCC	ENST00000256078	NM_033360.2	12	GGTGgc/TGTTgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254846	16254846	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	127	536	0	ENST00000375759.3:c.2111G>C	p.Arg704Thr	p.R704T	ENST00000375759	NM_015001.2	704	aGa/aCa																																																																															
BCL10	8915	MSKCC	GRCh37	1	85736540	85736544	+	missense_variant	Missense_Mutation	ONP	CTCTC	CTCTC	TTCTG			P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	71	296	0	ENST00000370580.1:c.103_107delinsCAGAA	p.Glu35_Arg36delinsGlnLys	p.E35_R36delinsQK	ENST00000370580	NM_003921.4	35	GAGAGa/CAGAAa																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165957	118165957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	131	518	0	ENST00000369448.3:c.467C>T	p.Ser156Phe	p.S156F	ENST00000369448	NM_017709.3	156	tCc/tTc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	153	567	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123243214	123243214	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	198	731	1	ENST00000358487.5:c.2299G>A	p.Glu767Lys	p.E767K	ENST00000358487	NM_000141.4	767	Gag/Aag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375357	118375357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	102	405	0	ENST00000534358.1:c.8750C>T	p.Ser2917Phe	p.S2917F	ENST00000534358	NM_005933.3	2917	tCt/tTt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061288	38061288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	152	789	1	ENST00000250448.2:c.701C>T	p.Ser234Phe	p.S234F	ENST00000250448	NM_004496.3	234	tCc/tTc																																																																															
BLM	641	MSKCC	GRCh37	15	91354594	91354594	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	91	521	0	ENST00000355112.3:c.4034C>G	p.Ser1345Cys	p.S1345C	ENST00000355112	NM_000057.2	1345	tCt/tGt																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	71	497	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16001793	16001793	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	88	476	0	ENST00000268712.3:c.2708C>G	p.Ser903Ter	p.S903*	ENST00000268712	NM_006311.3	903	tCa/tGa																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30302690	30302690	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	93	454	0	ENST00000322652.5:c.781G>C	p.Glu261Gln	p.E261Q	ENST00000322652	NM_015355.2	261	Gag/Cag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619076	37619076	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	143	668	1	ENST00000447079.4:c.752C>A	p.Ser251Ter	p.S251*	ENST00000447079	NM_015083.1	251	tCa/tAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385215	41385215	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	182	794	1	ENST00000373198.4:c.746C>A	p.Ser249Ter	p.S249*	ENST00000373198	NM_133170.3	249	tCa/tAa																																																																															
MST1	4485	MSKCC	GRCh37	3	49724654	49724654	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	96	617	0	ENST00000449682.2:c.535G>A	p.Gly179Arg	p.G179R	ENST00000449682	NM_020998.3	179	Gga/Aga																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204928	128204928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	176	1003	0	ENST00000341105.2:c.513C>A	p.Phe171Leu	p.F171L	ENST00000341105	NM_032638.4	171	ttC/ttA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	147	537	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	106	417	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179468	56179468	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	118	295	0	ENST00000399503.3:c.3781C>T	p.Gln1261Ter	p.Q1261*	ENST00000399503	NM_005921.1	1261	Caa/Taa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163687	32163688	+	missense_variant	Missense_Mutation	DNP	AC	AC	GT			P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	119	503	0	ENST00000375023.3:c.5538_5539inv	p.Ser1847Pro	p.S1847P	ENST00000375023	NM_004557.3	1846	gtGTca/gtACca																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545821	106545821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	99	348	1	ENST00000359195.3:c.3298C>T	p.His1100Tyr	p.H1100Y	ENST00000359195	NM_002649.2	1100	Cat/Tat																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38135864	38135864	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	23	585	0	ENST00000317025.8:c.3827G>C	p.Gly1276Ala	p.G1276A	ENST00000317025	NM_023034.1	1276	gGa/gCa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38137127	38137127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	162	698	0	ENST00000317025.8:c.3691G>A	p.Glu1231Lys	p.E1231K	ENST00000317025	NM_023034.1	1231	Gaa/Aaa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38157004	38157004	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	153	596	0	ENST00000317025.8:c.2716A>G	p.Met906Val	p.M906V	ENST00000317025	NM_023034.1	906	Atg/Gtg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135801012	135801012	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	67	437	0	ENST00000298552.3:c.325C>A	p.Gln109Lys	p.Q109K	ENST00000298552	NM_001162426.1	109	Caa/Aaa																																																																															
ATRX	546	MSKCC	GRCh37	X	76937536	76937536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	148	477	0	ENST00000373344.5:c.3212G>A	p.Gly1071Glu	p.G1071E	ENST00000373344	NM_000489.3	1071	gGa/gAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0047328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	268	561	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577560	7577566	+	frameshift_variant	Frame_Shift_Del	DEL	AACTGTT	AACTGTT	-			P-0047328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	192	610	0	ENST00000269305.4:c.715_721del	p.Asn239ProfsTer6	p.N239Pfs*6	ENST00000269305	NM_001126112.2	239	AACAGTTcc/cc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117650575	117650575	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	133	439	0	ENST00000368508.3:c.5283A>C	p.Leu1761Phe	p.L1761F	ENST00000368508	NM_002944.2	1761	ttA/ttC																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	50	406	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	66	465	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	60	612	2	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	134	864	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	65	741	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517202		P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	44	421	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	43	1008	3	ENST00000261937.6:c.1267dupC	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	235	889	1	ENST00000407977.2:c.349delC	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	55	870	8	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28611336	28611336	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201905189		P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	43	440	0	ENST00000241453.7:c.1295C>T	p.Thr432Met	p.T432M	ENST00000241453	NM_004119.2	432	aCg/aTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272337	15272337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs776990686		P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	80	1034	5	ENST00000263388.2:c.6102del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2034	ccC/cc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2985473	2985473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	34	483	2	ENST00000396946.4:c.338G>A	p.Arg113Gln	p.R113Q	ENST00000396946	NM_032415.4	113	cGg/cAg																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	75	483	3	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107008	27107008	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	65	695	0	ENST00000324856.7:c.6619C>T	p.Gln2207Ter	p.Q2207*	ENST00000324856	NM_006015.4	2207	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	200	677	0	ENST00000245479.2:c.916delG	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932084	39932085	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	11	386	0	ENST00000378444.4:c.2514dupC	p.Lys839GlnfsTer5	p.K839Qfs*5	ENST00000378444	NM_001123385.1	838	-/C																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99163087	99163087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	46	526	0	ENST00000074304.5:c.1093G>A	p.Ala365Thr	p.A365T	ENST00000074304	NM_001134224.1	365	Gca/Aca																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265386	10265386	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1003447106		P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	112	827	1	ENST00000340748.4:c.1660G>A	p.Ala554Thr	p.A554T	ENST00000340748		554	Gcg/Acg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120511	94120511	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	32	393	2	ENST00000369303.4:c.540G>T	p.Lys180Asn	p.K180N	ENST00000369303	NM_004440.3	180	aaG/aaT																																																																															
MSH3	4437	MSKCC	GRCh37	5	80064779	80064780	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	52	350	0	ENST00000265081.6:c.2216dup	p.Asn739LysfsTer29	p.N739Kfs*29	ENST00000265081	NM_002439.4	737	cta/ctAa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324463	31324463	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	75	296	0	ENST00000412585.2:c.343+2T>C		p.X115_splice	ENST00000412585	NM_005514.6	115																																																																																
PIK3C3	5289	MSKCC	GRCh37	18	39617690	39617690	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141329274		P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	47	339	1	ENST00000262039.4:c.1874C>T	p.Thr625Met	p.T625M	ENST00000262039	NM_002647.2	625	aCg/aTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967156	25967156	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201808592		P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	33	553	1	ENST00000435504.4:c.2050G>A	p.Ala684Thr	p.A684T	ENST00000435504		684	Gcc/Acc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639380	3639380	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	73	873	0	ENST00000294008.3:c.4259delC	p.Pro1420GlnfsTer30	p.P1420Qfs*30	ENST00000294008	NM_032444.2	1420	cCa/ca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389236	8389236	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	30	444	0	ENST00000356435.5:c.4382C>A	p.Ser1461Ter	p.S1461*	ENST00000356435		1461	tCa/tAa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16263964	16263964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	109	866	1	ENST00000375759.3:c.10333G>A	p.Val3445Ile	p.V3445I	ENST00000375759	NM_015001.2	3445	Gtc/Atc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943764	71943764	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	77	810	0	ENST00000298229.2:c.1807T>G	p.Phe603Val	p.F603V	ENST00000298229	NM_001567.3	603	Ttc/Gtc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18446859	18446859	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	40	284	0	ENST00000266497.5:c.944T>C	p.Ile315Thr	p.I315T	ENST00000266497		315	aTt/aCt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610116	81610116	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	45	492	0	ENST00000298171.2:c.1714A>G	p.Met572Val	p.M572V	ENST00000298171	NM_000369.2	572	Atg/Gtg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779476	3779476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	71	1158	0	ENST00000262367.5:c.5572C>T	p.Arg1858Cys	p.R1858C	ENST00000262367	NM_004380.2	1858	Cgc/Tgc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857373	9857373	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	32	514	0	ENST00000330684.3:c.4028T>C	p.Leu1343Pro	p.L1343P	ENST00000330684	NM_001134407.1	1343	cTt/cCt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39623700	39623700	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	25	285	0	ENST00000262039.4:c.2112del	p.Phe704LeufsTer31	p.F704Lfs*31	ENST00000262039	NM_002647.2	703	Ttt/tt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1627416	1627416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	80	875	0	ENST00000344749.5:c.308G>A	p.Gly103Asp	p.G103D	ENST00000344749	NM_001136139.2	103	gGt/gAt																																																																															
CARM1	10498	MSKCC	GRCh37	19	10982526	10982526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	111	201	1	ENST00000327064.4:c.148C>T	p.His50Tyr	p.H50Y	ENST00000327064	NM_199141.1	50	Cac/Tac																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637437	47637437	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	64	555	0	ENST00000233146.2:c.571C>A	p.Leu191Ile	p.L191I	ENST00000233146	NM_000251.2	191	Ctc/Atc																																																																															
CASP8	841	MSKCC	GRCh37	2	202149703	202149703	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	89	613	1	ENST00000358485.4:c.1144A>T	p.Ile382Phe	p.I382F	ENST00000358485	NM_001080125.1	382	Atc/Ttc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280110	66280110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	44	378	0	ENST00000273854.3:c.1579G>A	p.Ala527Thr	p.A527T	ENST00000273854	NM_004439.5	527	Gca/Aca																																																																															
TAP1	6890	MSKCC	GRCh37	6	32820216	32820216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	210	694	1	ENST00000354258.4:c.842C>T	p.Ala281Val	p.A281V	ENST00000354258	NM_000593.5	281	gCc/gTc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138198245	138198245	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150198888		P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	34	276	0	ENST00000237289.4:c.838C>T	p.Arg280Trp	p.R280W	ENST00000237289	NM_001270507.1	280	Cgg/Tgg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864646	68864646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	20	274	0	ENST00000288368.4:c.17G>A	p.Arg6His	p.R6H	ENST00000288368	NM_024870.2	6	cGc/cAc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87339254	87339254	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	45	478	0	ENST00000277120.3:c.836T>C	p.Val279Ala	p.V279A	ENST00000277120		279	gTc/gCc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44879965	44879965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	12	218	0	ENST00000377967.4:c.554C>T	p.Ser185Phe	p.S185F	ENST00000377967	NM_021140.2	185	tCt/tTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057682	27057682	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	624	621	1	ENST00000324856.7:c.1390C>T	p.Gln464Ter	p.Q464*	ENST00000324856	NM_006015.4	464	Caa/Taa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098973	178098973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	215	159	0	ENST00000397062.3:c.72G>C	p.Trp24Cys	p.W24C	ENST00000397062	NM_006164.4	24	tgG/tgC																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499354	89499354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	117	415	0	ENST00000336596.2:c.2524C>T	p.Arg842Ter	p.R842*	ENST00000336596	NM_005233.5	842	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	357	666	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
BCL10	8915	MSKCC	GRCh37	1	85733480	85733480	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	139	320	0	ENST00000370580.1:c.532G>C	p.Glu178Gln	p.E178Q	ENST00000370580	NM_003921.4	178	Gaa/Caa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21627813	21627813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	310	481	1	ENST00000421138.2:c.1317G>T	p.Lys439Asn	p.K439N	ENST00000421138		439	aaG/aaT																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272321	15272321	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	510	882	0	ENST00000263388.2:c.6118G>T	p.Gly2040Trp	p.G2040W	ENST00000263388	NM_000435.2	2040	Ggg/Tgg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165113	47165113	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	163	149	0	ENST00000409792.3:c.1013A>T	p.Asp338Val	p.D338V	ENST00000409792	NM_014159.6	338	gAt/gTt																																																																															
KIT	3815	MSKCC	GRCh37	4	55602711	55602711	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	247	321	0	ENST00000288135.5:c.2532T>A	p.Cys844Ter	p.C844*	ENST00000288135	NM_000222.2	844	tgT/tgA																																																																															
TET2	54790	MSKCC	GRCh37	4	106190848	106190848	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	293	497	0	ENST00000380013.4:c.4126G>C	p.Asp1376His	p.D1376H	ENST00000380013	NM_001127208.2	1376	Gac/Cac																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38153468	38153468	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	281	333	0	ENST00000317025.8:c.2761G>T	p.Gly921Ter	p.G921*	ENST00000317025	NM_023034.1	921	Gga/Tga																																																																															
LYN	4067	MSKCC	GRCh37	8	56882324	56882324	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	539	497	0	ENST00000519728.1:c.1022T>C	p.Leu341Pro	p.L341P	ENST00000519728	NM_002350.3	341	cTt/cCt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932189	39932189	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	249	419	0	ENST00000378444.4:c.2410G>A	p.Val804Ile	p.V804I	ENST00000378444	NM_001123385.1	804	Gtc/Atc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971196	21971199	+	frameshift_variant	Frame_Shift_Del	DEL	CATC	CATC	ATT			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	145	461	1	ENST00000304494.5:c.159_162delinsAAT	p.Met53IlefsTer93	p.M53Ifs*93	ENST00000304494	NM_000077.4	53	atGATG/atAAT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057520005		P-0047346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1085	237	705	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265404	152265404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	65	487	0	ENST00000206249.3:c.857T>C	p.Met286Thr	p.M286T	ENST00000206249	NM_000125.3	286	aTg/aCg																																																																															
RAC1	5879	MSKCC	GRCh37	7	6414399	6414399	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0047355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	76	194	0	ENST00000356142.4:c.33C>A	p.Asp11Glu	p.D11E	ENST00000356142	NM_018890.3	11	gaC/gaA																																																																															
MDM2	4193	MSKCC	GRCh37	12	69222593	69222593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	70	322	1	ENST00000462284.1:c.566G>A	p.Arg189His	p.R189H	ENST00000462284	NM_002392.5	189	cGc/cAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41566521	41566521	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	76	291	0	ENST00000263253.7:c.4398G>C	p.Trp1466Cys	p.W1466C	ENST00000263253	NM_001429.3	1466	tgG/tgC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151882717	151882717	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0047355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	23	196	0	ENST00000262189.6:c.5009-1G>C		p.X1670_splice	ENST00000262189	NM_170606.2	1670																																																																																
FUBP1	8880	MSKCC	GRCh37	1	78430854	78430854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	135	368	0	ENST00000370768.2:c.535C>T	p.His179Tyr	p.H179Y	ENST00000370768	NM_003902.3	179	Cat/Tat																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779698	3779698	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	156	690	0	ENST00000262367.5:c.5350C>T	p.Gln1784Ter	p.Q1784*	ENST00000262367	NM_004380.2	1784	Cag/Tag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781273	3781273	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	242	868	0	ENST00000262367.5:c.5092C>G	p.Gln1698Glu	p.Q1698E	ENST00000262367	NM_004380.2	1698	Cag/Gag																																																																															
NF2	4771	MSKCC	GRCh37	22	30074308	30074308	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	80	291	0	ENST00000338641.4:c.1570G>T	p.Glu524Ter	p.E524*	ENST00000338641	NM_000268.3	524	Gaa/Taa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028871	47028871	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	139	527	0	ENST00000329236.7:c.175G>T	p.Asp59Tyr	p.D59Y	ENST00000329236	NM_001204466.1	59	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	119	308	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0047358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	118	424	2	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
RRAS	6237	MSKCC	GRCh37	19	50143309	50143309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	15	103	0	ENST00000246792.3:c.47G>A	p.Gly16Asp	p.G16D	ENST00000246792	NM_006270.3	16	gGc/gAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	57	293	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0047361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	147	686	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																															
CDH1	999	MSKCC	GRCh37	16	68844166	68844167	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	135	516	0	ENST00000261769.5:c.755dup	p.Thr253AsnfsTer5	p.T253Nfs*5	ENST00000261769	NM_004360.3	252	gta/gTta																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0047313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	163	930	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0047313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	189	805	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39311710	39311710	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs151267022		P-0047313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	120	790	0	ENST00000373001.3:c.949A>G	p.Ile317Val	p.I317V	ENST00000373001	NM_022157.3	317	Att/Gtt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979345	93979345	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	59	466	0	ENST00000369303.4:c.1483A>T	p.Thr495Ser	p.T495S	ENST00000369303	NM_004440.3	495	Acc/Tcc																																																																															
MED12	9968	MSKCC	GRCh37	X	70357218	70357220	+	frameshift_variant	Frame_Shift_Del	DEL	TCG	TCG	C			P-0047313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	167	729	0	ENST00000374080.3:c.5733_5735delinsC	p.Arg1912ProfsTer138	p.R1912Pfs*138	ENST00000374080		1911	ctTCGc/ctCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	580	458	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467924	50467924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	108	753	0	ENST00000331340.3:c.1159G>A	p.Glu387Lys	p.E387K	ENST00000331340	NM_006060.4	387	Gag/Aag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991329	72991329	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	131	592	0	ENST00000268489.5:c.2716C>G	p.Leu906Val	p.L906V	ENST00000268489	NM_006885.3	906	Cta/Gta																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488715	212488715	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	203	564	0	ENST00000342788.4:c.2134A>G	p.Ile712Val	p.I712V	ENST00000342788	NM_005235.2	712	Att/Gtt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444387	50444387	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	172	492	0	ENST00000331340.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000331340	NM_006060.4	106	gGa/gTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859462	151859462	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	114	542	0	ENST00000262189.6:c.11200C>G	p.Pro3734Ala	p.P3734A	ENST00000262189	NM_170606.2	3734	Cct/Gct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0047345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	95	824	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	22	465	0	ENST00000304494.5:c.250G>C	p.Asp84His	p.D84H	ENST00000304494	NM_000077.4	84	Gac/Cac																																																																															
ALK	238	MSKCC	GRCh37	2	29462635	29462635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	38	959	1	ENST00000389048.3:c.2266G>A	p.Gly756Ser	p.G756S	ENST00000389048	NM_004304.4	756	Ggc/Agc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78935260	78935260	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	36	940	0	ENST00000306801.3:c.3672C>G	p.Asp1224Glu	p.D1224E	ENST00000306801	NM_020761.2	1224	gaC/gaG																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217715	7217715	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	48	532	0	ENST00000380728.2:c.212A>C	p.Lys71Thr	p.K71T	ENST00000380728		71	aAg/aCg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56414875	56414875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	38	701	0	ENST00000348428.3:c.2276G>A	p.Gly759Asp	p.G759D	ENST00000348428	NM_006785.3	759	gGt/gAt																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308344	30308344	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	30	600	1	ENST00000262643.3:c.358A>G	p.Met120Val	p.M120V	ENST00000262643	NM_001238.2	120	Atg/Gtg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399338	139399338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	25	914	0	ENST00000277541.6:c.4805C>T	p.Thr1602Ile	p.T1602I	ENST00000277541	NM_017617.3	1602	aCc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0046131-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			900	153	717	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0047258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	11	329	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934578		P-0047258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	24	563	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																															
AR	367	MSKCC	GRCh37	X	66943542	66943543	+	missense_variant	Missense_Mutation	DNP	GC	GC	CT			P-0047211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	69	177	0	ENST00000374690.3:c.2622_2623delinsCT	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	874	ctGCat/ctCTat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0047212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	185	542	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	409	612	2	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258744	115258744	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434596		P-0047212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	25	286	0	ENST00000369535.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000369535	NM_002524.4	13	gGt/gAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0047212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	47	462	1	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112177968	112177968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	31	230	0	ENST00000257430.4:c.6677G>A	p.Arg2226Gln	p.R2226Q	ENST00000257430	NM_000038.5	2226	cGa/cAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151850009	151850009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	21	233	0	ENST00000262189.6:c.12307G>A	p.Asp4103Asn	p.D4103N	ENST00000262189	NM_170606.2	4103	Gac/Aac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115450	115115450	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	136	354	0	ENST00000257566.3:c.876A>T	p.Leu292Phe	p.L292F	ENST00000257566	NM_016569.3	292	ttA/ttT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508629	106508629	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	40	414	0	ENST00000359195.3:c.623C>A	p.Pro208Gln	p.P208Q	ENST00000359195	NM_002649.2	208	cCg/cAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118934	70118934	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	84	628	0	ENST00000245479.2:c.506A>C	p.His169Pro	p.H169P	ENST00000245479	NM_000346.3	169	cAc/cCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	144	311	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0047233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	60	525	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542201	187542201	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs189523191		P-0047233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	67	399	0	ENST00000441802.2:c.5539G>A	p.Val1847Ile	p.V1847I	ENST00000441802	NM_005245.3	1847	Gtc/Atc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212252718	212252718	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0047233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	18	121	0	ENST00000342788.4:c.3136-1G>C		p.X1046_splice	ENST00000342788	NM_005235.2	1046																																																																																
APC	324	MSKCC	GRCh37	5	112173798	112173798	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	174	254	0	ENST00000257430.4:c.2507del	p.Ser836TyrfsTer6	p.S836Yfs*6	ENST00000257430	NM_000038.5	836	tCa/ta																																																																															
FAT1	2195	MSKCC	GRCh37	4	187531007	187531007	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	86	321	0	ENST00000441802.2:c.10016C>A	p.Thr3339Asn	p.T3339N	ENST00000441802	NM_005245.3	3339	aCc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	125	654	0	ENST00000269305.4:c.857A>C	p.Glu286Ala	p.E286A	ENST00000269305	NM_001126112.2	286	gAa/gCa																																																																															
SESN3	143686	MSKCC	GRCh37	11	94918424	94918424	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	20	232	0	ENST00000536441.1:c.758T>G	p.Phe253Cys	p.F253C	ENST00000536441	NM_144665.3	253	tTt/tGt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106524705	106524705	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	10	162	0	ENST00000359195.3:c.2866G>C	p.Glu956Gln	p.E956Q	ENST00000359195	NM_002649.2	956	Gag/Cag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020501	69020501	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	11	457	0	ENST00000288368.4:c.2873T>A	p.Phe958Tyr	p.F958Y	ENST00000288368	NM_024870.2	958	tTt/tAt																																																																															
ARAF	369	MSKCC	GRCh37	X	47424399	47424399	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	21	574	0	ENST00000377045.4:c.319T>G	p.Phe107Val	p.F107V	ENST00000377045	NM_001654.4	107	Ttc/Gtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0047239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	97	292	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578509	7578509	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	385	760	0	ENST00000269305.4:c.421T>C	p.Cys141Arg	p.C141R	ENST00000269305	NM_001126112.2	141	Tgc/Cgc																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175217	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	21	143	0	ENST00000257430.4:c.3929dup	p.Ile1311AspfsTer4	p.I1311Dfs*4	ENST00000257430	NM_000038.5	1309	gaa/gAaa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912186	114912186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	187	411	0	ENST00000543371.1:c.1256C>T	p.Ala419Val	p.A419V	ENST00000543371	NM_001198531.1	419	gCg/gTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120449	70120450	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0047239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	364	800	0	ENST00000245479.2:c.1452_1453dup	p.Gly485ValfsTer39	p.G485Vfs*39	ENST00000245479	NM_000346.3	484	tct/tcTGt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1646426	1646426	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0047239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	222	501	0	ENST00000344749.5:c.73A>G	p.Met25Val	p.M25V	ENST00000344749	NM_001136139.2	25	Atg/Gtg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221033	5221033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	187	501	2	ENST00000357368.4:c.3433G>A	p.Gly1145Ser	p.G1145S	ENST00000357368	NM_002850.3	1145	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112173840	112173847	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGTTTG	GAAGTTTG	-			P-0047239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	92	247	0	ENST00000257430.4:c.2551_2558del	p.Ser851GlufsTer58	p.S851Efs*58	ENST00000257430	NM_000038.5	850	aGAAGTTTG/a																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	19	411	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	136	247	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	21	280	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	27	422	0	ENST00000263967.3:c.1636C>G	p.Gln546Glu	p.Q546E	ENST00000263967	NM_006218.2	546	Cag/Gag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717715	89717716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1393832338		P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	21	328	1	ENST00000371953.3:c.741dup	p.Pro248ThrfsTer5	p.P248Tfs*5	ENST00000371953	NM_000314.4	247	tta/ttAa																																																																															
APC	324	MSKCC	GRCh37	5	112175789	112175789	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	61	156	0	ENST00000257430.4:c.4501del	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1500	Ttt/tt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717743	89717744	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	22	283	0	ENST00000371953.3:c.770dup	p.Phe258LeufsTer40	p.F258Lfs*40	ENST00000371953	NM_000314.4	256	-/T																																																																															
PALB2	79728	MSKCC	GRCh37	16	23632753	23632753	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	14	341	0	ENST00000261584.4:c.3043A>T	p.Thr1015Ser	p.T1015S	ENST00000261584	NM_024675.3	1015	Act/Tct																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45371774	45371774	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	12	270	0	ENST00000262160.6:c.1217A>G	p.Tyr406Cys	p.Y406C	ENST00000262160	NM_005901.5	406	tAt/tGt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395691	45395691	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	15	251	0	ENST00000262160.6:c.443del	p.Asn148ThrfsTer15	p.N148Tfs*15	ENST00000262160	NM_005901.5	148	aAc/ac																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210421	2210421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	114	826	0	ENST00000398665.3:c.1028G>T	p.Arg343Leu	p.R343L	ENST00000398665	NM_032482.2	343	cGc/cTc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10254554	10254554	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	59	494	0	ENST00000340748.4:c.2956G>C	p.Asp986His	p.D986H	ENST00000340748		986	Gat/Cat																																																																															
APC	324	MSKCC	GRCh37	5	112137045	112137045	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	109	229	0	ENST00000257430.4:c.799G>T	p.Gly267Ter	p.G267*	ENST00000257430	NM_000038.5	267	Gga/Tga																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250590	26250590	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	139	540	0	ENST00000446824.2:c.244G>T	p.Asp82Tyr	p.D82Y	ENST00000446824	NM_021018.2	82	Gac/Tac																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738850	145738850	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	89	919	0	ENST00000428558.2:c.2215A>G	p.Thr739Ala	p.T739A	ENST00000428558	NM_004260.3	739	Acc/Gcc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8471048	8471048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	13	260	0	ENST00000356435.5:c.3451C>T	p.Arg1151Cys	p.R1151C	ENST00000356435		1151	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0047260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	25	309	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0047260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	44	700	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118360929	118360929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	38	463	0	ENST00000534358.1:c.4661C>T	p.Ser1554Leu	p.S1554L	ENST00000534358	NM_005933.3	1554	tCa/tTa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115972	8115973	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	155	375	0	ENST00000346208.3:c.1320dup	p.Ala441ArgfsTer66	p.A441Rfs*66	ENST00000346208		440	acc/aCcc																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182641	38182641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	11	262	0	ENST00000396334.3:c.794T>C	p.Leu265Pro	p.L265P	ENST00000396334	NM_002468.4	265	cTg/cCg																																																																															
RIT1	6016	MSKCC	GRCh37	1	155870324	155870324	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	112	377	0	ENST00000368323.3:c.515A>T	p.Asp172Val	p.D172V	ENST00000368323	NM_006912.5	172	gAt/gTt																																																																															
BIRC3	330	MSKCC	GRCh37	11	102201952	102201952	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	12	166	0	ENST00000263464.3:c.1304del	p.Ala435GlufsTer12	p.A435Efs*12	ENST00000263464	NM_001165.4	435	gCa/ga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118352567	118352567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	72	415	0	ENST00000534358.1:c.3772A>G	p.Ser1258Gly	p.S1258G	ENST00000534358	NM_005933.3	1258	Agt/Ggt																																																																															
POLE	5426	MSKCC	GRCh37	12	133210829	133210829	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	113	648	0	ENST00000320574.5:c.5947T>A	p.Leu1983Met	p.L1983M	ENST00000320574	NM_006231.2	1983	Ttg/Atg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138122	2138122	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	140	845	0	ENST00000219476.3:c.5142G>T	p.Gln1714His	p.Q1714H	ENST00000219476	NM_000548.3	1714	caG/caT																																																																															
CYLD	1540	MSKCC	GRCh37	16	50815160	50815160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	76	324	0	ENST00000398568.2:c.1513G>A	p.Asp505Asn	p.D505N	ENST00000398568	NM_001042412.1	505	Gat/Aat																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346978	89346978	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	88	544	0	ENST00000301030.4:c.5972C>G	p.Pro1991Arg	p.P1991R	ENST00000301030	NM_001256183.1	1991	cCa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577090	7577113	+	inframe_deletion	In_Frame_Del	DEL	CGCCGGTCTCTCCCAGGACAGGCA	CGCCGGTCTCTCCCAGGACAGGCA	-			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	134	687	0	ENST00000269305.4:c.825_848del	p.Ala276_Arg283del	p.A276_R283del	ENST00000269305	NM_001126112.2	275	tgTGCCTGTCCTGGGAGAGACCGGCGc/tgc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696742	47696742	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	66	214	0	ENST00000347630.2:c.206T>C	p.Leu69Ser	p.L69S	ENST00000347630	NM_001007230.1	69	tTg/tCg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281491	15281491	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	112	654	0	ENST00000263388.2:c.4882G>T	p.Asp1628Tyr	p.D1628Y	ENST00000263388	NM_000435.2	1628	Gac/Tac																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213166	39213166	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	277	846	1	ENST00000402219.2:c.3801C>A	p.His1267Gln	p.H1267Q	ENST00000402219	NM_005633.3	1267	caC/caA																																																																															
ERG	2078	MSKCC	GRCh37	21	39755409	39755409	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	106	531	0	ENST00000288319.7:c.1356C>A	p.Tyr452Ter	p.Y452*	ENST00000288319	NM_182918.3	452	taC/taA																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978658	70978658	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	138	521	0	ENST00000276594.2:c.995G>T	p.Arg332Leu	p.R332L	ENST00000276594	NM_024504.3	332	cGc/cTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63409988	63409988	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	103	257	0	ENST00000330258.3:c.3179G>C	p.Cys1060Ser	p.C1060S	ENST00000330258	NM_152424.3	1060	tGc/tCc																																																																															
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	100	676	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	136	424	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265569	152265569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	153	480	0	ENST00000206249.3:c.1022C>T	p.Ser341Leu	p.S341L	ENST00000206249	NM_000125.3	341	tCg/tTg																																																																															
NF2	4771	MSKCC	GRCh37	22	30077543	30077543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	99	416	0	ENST00000338641.4:c.1690G>A	p.Glu564Lys	p.E564K	ENST00000338641	NM_000268.3	564	Gag/Aag																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751931	57751931	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55768901		P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	190	499	0	ENST00000274289.3:c.1306G>A	p.Glu436Lys	p.E436K	ENST00000274289	NM_006622.3	436	Gaa/Aaa																																																																															
YES1	7525	MSKCC	GRCh37	18	732848	732848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	144	567	0	ENST00000314574.4:c.1409G>A	p.Arg470Gln	p.R470Q	ENST00000314574	NM_005433.3	470	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	432	636	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44870260	44870260	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	116	397	0	ENST00000377967.4:c.439C>T	p.Gln147Ter	p.Q147*	ENST00000377967	NM_021140.2	147	Cag/Tag																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729400	41729400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	157	577	0	ENST00000242208.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000242208	NM_002192.2	377	Cgc/Tgc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42840456	42840456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	123	474	0	ENST00000398585.3:c.1292C>T	p.Ser431Leu	p.S431L	ENST00000398585	NM_001135099.1	431	tCa/tTa																																																																															
TOP1	7150	MSKCC	GRCh37	20	39729866	39729866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	130	410	0	ENST00000361337.2:c.1181C>T	p.Ser394Phe	p.S394F	ENST00000361337	NM_003286.2	394	tCt/tTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023030	27023030	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	22	63	0	ENST00000324856.7:c.136G>T	p.Glu46Ter	p.E46*	ENST00000324856	NM_006015.4	46	Gag/Tag																																																																															
ERG	2078	MSKCC	GRCh37	21	39755705	39755705	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs547051424		P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	191	591	0	ENST00000288319.7:c.1060C>T	p.Arg354Trp	p.R354W	ENST00000288319	NM_182918.3	354	Cgg/Tgg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1961237	1961237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	145	453	1	ENST00000382891.5:c.3025G>A	p.Asp1009Asn	p.D1009N	ENST00000382891	NM_133335.3	1009	Gat/Aat																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16040727	16040727	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	76	185	0	ENST00000268712.3:c.1408-1G>C		p.X470_splice	ENST00000268712	NM_006311.3	470																																																																																
LYN	4067	MSKCC	GRCh37	8	56882350	56882350	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	140	469	0	ENST00000519728.1:c.1048C>T	p.Gln350Ter	p.Q350*	ENST00000519728	NM_002350.3	350	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427912	49427912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	200	684	0	ENST00000301067.7:c.10678G>A	p.Asp3560Asn	p.D3560N	ENST00000301067	NM_003482.3	3560	Gat/Aat																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256219	16256219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	138	436	0	ENST00000375759.3:c.3484G>A	p.Asp1162Asn	p.D1162N	ENST00000375759	NM_015001.2	1162	Gac/Aac																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981276	201981276	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	246	912	0	ENST00000359651.3:c.355G>T	p.Asp119Tyr	p.D119Y	ENST00000359651		119	Gac/Tac																																																																															
BIRC3	330	MSKCC	GRCh37	11	102206918	102206918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	91	238	0	ENST00000263464.3:c.1546G>C	p.Glu516Gln	p.E516Q	ENST00000263464	NM_001165.4	516	Gaa/Caa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871770	12871770	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	84	182	0	ENST00000228872.4:c.487C>G	p.Gln163Glu	p.Q163E	ENST00000228872	NM_004064.3	163	Caa/Gaa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21626529	21626529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	106	455	0	ENST00000421138.2:c.1403C>T	p.Ser468Leu	p.S468L	ENST00000421138		468	tCa/tTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448094	49448094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	175	547	0	ENST00000301067.7:c.506C>T	p.Ser169Leu	p.S169L	ENST00000301067	NM_003482.3	169	tCa/tTa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864378	57864378	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	258	877	0	ENST00000228682.2:c.1855C>A	p.Pro619Thr	p.P619T	ENST00000228682	NM_005269.2	619	Cct/Act																																																																															
MGA	23269	MSKCC	GRCh37	15	42002948	42002948	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	139	404	0	ENST00000219905.7:c.2485G>C	p.Glu829Gln	p.E829Q	ENST00000219905	NM_001164273.1	829	Gaa/Caa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56865899	56865899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	99	313	1	ENST00000308159.5:c.1231G>A	p.Glu411Lys	p.E411K	ENST00000308159	NM_014669.4	411	Gag/Aag																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761247	59761247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	326	580	0	ENST00000259008.2:c.3160G>A	p.Glu1054Lys	p.E1054K	ENST00000259008	NM_032043.2	1054	Gaa/Aaa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78865595	78865595	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	193	538	0	ENST00000306801.3:c.2059G>C	p.Glu687Gln	p.E687Q	ENST00000306801	NM_020761.2	687	Gaa/Caa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99189334	99189334	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	166	510	0	ENST00000074304.5:c.2590C>T	p.Gln864Ter	p.Q864*	ENST00000074304	NM_001134224.1	864	Cag/Tag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096592	178096592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	86	233	0	ENST00000397062.3:c.739C>T	p.Leu247Phe	p.L247F	ENST00000397062	NM_006164.4	247	Ctt/Ttt																																																																															
NF2	4771	MSKCC	GRCh37	22	30051626	30051626	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	107	314	0	ENST00000338641.4:c.560G>C	p.Arg187Thr	p.R187T	ENST00000338641	NM_000268.3	187	aGa/aCa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127539	55127539	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	102	326	0	ENST00000257290.5:c.327G>C	p.Glu109Asp	p.E109D	ENST00000257290	NM_006206.4	109	gaG/gaC																																																																															
NSD1	64324	MSKCC	GRCh37	5	176619009	176619009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	130	402	0	ENST00000439151.2:c.1052C>T	p.Ser351Leu	p.S351L	ENST00000439151	NM_022455.4	351	tCa/tTa																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839889	27839889	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	212	710	0	ENST00000328488.2:c.205C>T	p.Gln69Ter	p.Q69*	ENST00000328488	NM_003533.2	69	Cag/Tag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32191635	32191635	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	183	770	0	ENST00000375023.3:c.71G>A	p.Arg24Lys	p.R24K	ENST00000375023	NM_004557.3	24	aGa/aAa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32191641	32191641	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	181	786	0	ENST00000375023.3:c.65G>C	p.Arg22Thr	p.R22T	ENST00000375023	NM_004557.3	22	aGa/aCa																																																																															
RAC1	5879	MSKCC	GRCh37	7	6414370	6414370	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	97	238	0	ENST00000356142.4:c.4C>T	p.Gln2Ter	p.Q2*	ENST00000356142	NM_018890.3	2	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949054	151949054	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	171	426	0	ENST00000262189.6:c.1591G>C	p.Glu531Gln	p.E531Q	ENST00000262189	NM_170606.2	531	Gag/Cag																																																																															
STAG2	10735	MSKCC	GRCh37	X	123224729	123224729	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	68	349	0	ENST00000218089.9:c.3493C>T	p.Gln1165Ter	p.Q1165*	ENST00000218089	NM_001042749.1	1165	Caa/Taa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118369182	118369182	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	137	415	0	ENST00000534358.1:c.5900G>T	p.Cys1967Phe	p.C1967F	ENST00000534358	NM_005933.3	1967	tGt/tTt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061139	38061198	+	inframe_deletion	In_Frame_Del	DEL	CCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCT	CCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCT	-			P-0046991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	229	463	2	ENST00000250448.2:c.791_850del	p.Lys264_Gly284delinsSer	p.K264_G284delinsS	ENST00000250448	NM_004496.3	264	aAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGgc/agc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	202	605	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	121	806	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	22	334	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TET1	80312	MSKCC	GRCh37	10	70332337	70332337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	177	506	0	ENST00000373644.4:c.242G>A	p.Arg81His	p.R81H	ENST00000373644	NM_030625.2	81	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	69	191	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
AXL	558	MSKCC	GRCh37	19	41743932	41743933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778012871		P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1440	135	1100	4	ENST00000301178.4:c.874dup	p.His292ProfsTer47	p.H292Pfs*47	ENST00000301178	NM_021913.4	289	-/C																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	95	410	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	298	257	0	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1294	416	1232	5	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	154	461	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874637	35874637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	139	412	1	ENST00000303115.3:c.799del	p.Arg267GlyfsTer28	p.R267Gfs*28	ENST00000303115	NM_002185.3	265	Aaa/aa																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944913	31944913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	150	341	1	ENST00000340398.3:c.188G>A	p.Arg63Gln	p.R63Q	ENST00000340398	NM_001013699.2	63	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	193	473	0	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740623	58740624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs763475304		P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	197	525	2	ENST00000305921.3:c.1535dup	p.Asn512LysfsTer16	p.N512Kfs*16	ENST00000305921	NM_003620.3	510	caa/cAaa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117594	70117594	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	333	996	0	ENST00000245479.2:c.66del	p.Ser23AlafsTer38	p.S23Afs*38	ENST00000245479	NM_000346.3	21	gCc/gc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681119	117681120	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs748436511		P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	148	482	0	ENST00000368508.3:c.3500dup	p.Leu1167PhefsTer26	p.L1167Ffs*26	ENST00000368508	NM_002944.2	1167	tta/ttTa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126729	5126729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	89	455	0	ENST00000381652.3:c.3337C>T	p.Arg1113Cys	p.R1113C	ENST00000381652	NM_004972.3	1113	Cgc/Tgc																																																																															
REL	5966	MSKCC	GRCh37	2	61147770	61147771	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	104	214	0	ENST00000295025.8:c.1086dup	p.Glu363ArgfsTer8	p.E363Rfs*8	ENST00000295025	NM_002908.2	360	-/A																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416952	416953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	189	488	12	ENST00000399788.2:c.3597dupA	p.Gly1200ArgfsTer7	p.G1200Rfs*7	ENST00000399788	NM_001042603.1	1199	-/A																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	60	726	0	ENST00000245479.2:c.916delG	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911288	29911288	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	29	393	3	ENST00000376809.5:c.587T>C	p.Leu196Pro	p.L196P	ENST00000376809	NM_002116.7	196	cTg/cCg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	215	532	8	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434959	49434959	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	68	894	1	ENST00000301067.7:c.6594del	p.Tyr2199IlefsTer65	p.Y2199Ifs*65	ENST00000301067	NM_003482.3	2198	ccC/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211898	36211899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775294431		P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1162	267	1010	1	ENST00000222270.7:c.1656dup	p.Lys553GlnfsTer46	p.K553Qfs*46	ENST00000222270	NM_014727.1	550	gac/gaCc																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793676	89793677	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	106	298	1	ENST00000336032.3:c.752dup	p.Pro252AlafsTer3	p.P252Afs*3	ENST00000336032	NM_006813.2	249	gaa/gAaa																																																																															
IGF2	3481	MSKCC	GRCh37	11	2161390	2161390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	283	696	0	ENST00000434045.2:c.137G>A	p.Arg46His	p.R46H	ENST00000434045	NM_001127598.1	46	cGc/cAc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931451	131931452	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	106	418	3	ENST00000265335.6:c.2164_2165dup	p.Glu723ArgfsTer14	p.E723Rfs*14	ENST00000265335		719	cta/ctAAa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502662	149502662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	320	757	1	ENST00000261799.4:c.2126G>A	p.Arg709His	p.R709H	ENST00000261799	NM_002609.3	709	cGc/cAc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647423	3647423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	309	956	1	ENST00000294008.3:c.1640C>T	p.Thr547Met	p.T547M	ENST00000294008	NM_032444.2	547	aCg/aTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70361097	70361098	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAG			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	170	343	0	ENST00000374080.3:c.6306_6308dup	p.Gln2115dup	p.Q2115dup	ENST00000374080		2115	-/CAG																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944931	31944931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	152	340	0	ENST00000340398.3:c.170C>T	p.Ser57Leu	p.S57L	ENST00000340398	NM_001013699.2	57	tCg/tTg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198264796	198264796	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	61	457	0	ENST00000335508.6:c.2996C>A	p.Ala999Asp	p.A999D	ENST00000335508	NM_012433.2	999	gCc/gAc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127733	64127733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	404	1005	0	ENST00000334205.4:c.226G>A	p.Ala76Thr	p.A76T	ENST00000334205	NM_003942.2	76	Gcc/Acc																																																																															
GNA11	2767	MSKCC	GRCh37	19	3121037	3121037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	121	961	0	ENST00000078429.4:c.940G>A	p.Val314Met	p.V314M	ENST00000078429	NM_002067.2	314	Gtg/Atg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411771	63411772	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	291	473	0	ENST00000330258.3:c.1395dup	p.Asn466GlnfsTer2	p.N466Qfs*2	ENST00000330258	NM_152424.3	465	-/C																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127991	64127991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	348	943	0	ENST00000334205.4:c.389G>A	p.Arg130His	p.R130H	ENST00000334205	NM_003942.2	130	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49418412	49418412	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	113	719	0	ENST00000301067.7:c.16001A>G	p.Asn5334Ser	p.N5334S	ENST00000301067	NM_003482.3	5334	aAc/aGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434673	49434673	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1416	102	1146	0	ENST00000301067.7:c.6880del	p.Ala2294HisfsTer28	p.A2294Hfs*28	ENST00000301067	NM_003482.3	2294	Gca/ca																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864249	57864249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	108	829	0	ENST00000228682.2:c.1726T>C	p.Ser576Pro	p.S576P	ENST00000228682	NM_005269.2	576	Tcc/Ccc																																																																															
RAD51	5888	MSKCC	GRCh37	15	41011056	41011056	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	93	663	0	ENST00000267868.3:c.489G>T	p.Glu163Asp	p.E163D	ENST00000267868	NM_002875.4	163	gaG/gaT																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467213	99467213	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	153	391	0	ENST00000268035.6:c.2594A>G	p.Tyr865Cys	p.Y865C	ENST00000268035	NM_000875.3	865	tAt/tGt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640656	3640656	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1337	83	1099	0	ENST00000294008.3:c.2983T>A	p.Ser995Thr	p.S995T	ENST00000294008	NM_032444.2	995	Tca/Aca																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37863374	37863374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1421	95	1003	0	ENST00000269571.5:c.205G>A	p.Ala69Thr	p.A69T	ENST00000269571		69	Gcc/Acc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58678100	58678100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	277	707	0	ENST00000305921.3:c.325G>A	p.Gly109Arg	p.G109R	ENST00000305921	NM_003620.3	109	Ggg/Agg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226919	2226919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	130	725	1	ENST00000398665.3:c.4399C>T	p.Pro1467Ser	p.P1467S	ENST00000398665	NM_032482.2	1467	Ccc/Tcc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303323	15303323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1455	90	984	0	ENST00000263388.2:c.205C>T	p.Pro69Ser	p.P69S	ENST00000263388	NM_000435.2	69	Cct/Tct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224301	36224301	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1518	92	1082	0	ENST00000222270.7:c.6851T>C	p.Phe2284Ser	p.F2284S	ENST00000222270	NM_014727.1	2284	tTc/tCc																																																																															
CASP8	841	MSKCC	GRCh37	2	202149917	202149917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	250	746	0	ENST00000358485.4:c.1358C>A	p.Pro453Gln	p.P453Q	ENST00000358485	NM_001080125.1	453	cCg/cAg																																																																															
ERG	2078	MSKCC	GRCh37	21	39817418	39817418	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	222	616	2	ENST00000288319.7:c.145C>A	p.Pro49Thr	p.P49T	ENST00000288319	NM_182918.3	49	Cca/Aca																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71064752	71064752	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	65	484	0	ENST00000318789.4:c.922T>C	p.Cys308Arg	p.C308R	ENST00000318789	NM_032682.5	308	Tgc/Cgc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138433536	138433536	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	31	447	0	ENST00000289153.2:c.1076A>G	p.His359Arg	p.H359R	ENST00000289153	NM_006219.2	359	cAt/cGt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806197	1806197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1151	275	1049	0	ENST00000260795.2:c.1216C>A	p.Leu406Met	p.L406M	ENST00000260795		406	Ctg/Atg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143181645	143181645	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	37	381	0	ENST00000262992.4:c.688G>T	p.Val230Leu	p.V230L	ENST00000262992	NM_001101669.1	230	Gtg/Ttg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31437407	31437407	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	75	456	0	ENST00000344624.3:c.2883-2A>T		p.X961_splice	ENST00000344624		961																																																																																
APC	324	MSKCC	GRCh37	5	112175398	112175399	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	91	290	0	ENST00000257430.4:c.4111dup	p.Ser1371LysfsTer4	p.S1371Kfs*4	ENST00000257430	NM_000038.5	1369	-/A																																																																															
RAD50	10111	MSKCC	GRCh37	5	131915153	131915153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	127	473	0	ENST00000265335.6:c.510G>T	p.Lys170Asn	p.K170N	ENST00000265335		170	aaG/aaT																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517514	176517514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1463	128	1138	3	ENST00000292408.4:c.215G>A	p.Arg72His	p.R72H	ENST00000292408	NM_213647.1	72	cGc/cAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048844	180048844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1366	123	1130	0	ENST00000261937.6:c.1718C>T	p.Pro573Leu	p.P573L	ENST00000261937	NM_182925.4	573	cCg/cTg																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250449	26250449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	221	710	0	ENST00000446824.2:c.385C>T	p.Arg129Cys	p.R129C	ENST00000446824	NM_021018.2	129	Cgc/Tgc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680349	30680349	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	279	661	0	ENST00000376406.3:c.1370T>C	p.Val457Ala	p.V457A	ENST00000376406	NM_014641.2	457	gTg/gCg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803007	32803007	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	237	679	2	ENST00000374899.4:c.869C>A	p.Pro290His	p.P290H	ENST00000374899	NM_018833.2	290	cCt/cAt																																																																															
MET	4233	MSKCC	GRCh37	7	116411611	116411611	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	202	452	0	ENST00000397752.3:c.2790T>A	p.Asn930Lys	p.N930K	ENST00000397752	NM_000245.2	930	aaT/aaA																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249740	110249740	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1412	112	1077	1	ENST00000374672.4:c.935C>A	p.Pro312His	p.P312H	ENST00000374672	NM_004235.4	312	cCc/cAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395022	139395022	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	94	806	0	ENST00000277541.6:c.5916C>A	p.Asp1972Glu	p.D1972E	ENST00000277541	NM_017617.3	1972	gaC/gaA																																																																															
MET	4233	MSKCC	GRCh37	7	116411885	116411901	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTTTCTCTCTGTTTTAA	CTTTCTCTCTGTTTTAA	-			P-0047082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	200	696	0	ENST00000397752.3:c.2888-18_2888-2del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
IKBKE	9641	MSKCC	GRCh37	1	206667323	206667323	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1606	167	741	3	ENST00000367120.3:c.2116C>T	p.Arg706Trp	p.R706W	ENST00000367120	NM_014002.3	706	Cgg/Tgg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4117439	4117439	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202220799		P-0047126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	224	698	1	ENST00000262948.5:c.281C>T	p.Ser94Leu	p.S94L	ENST00000262948	NM_030662.3	94	tCg/tTg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056039	26056039	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs61742488		P-0047126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	113	451	0	ENST00000343677.2:c.618G>C	p.Lys206Asn	p.K206N	ENST00000343677	NM_005319.3	206	aaG/aaC																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197129	26197129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	147	645	0	ENST00000356476.2:c.350G>A	p.Arg117Gln	p.R117Q	ENST00000356476		117	cGa/cAa																																																																															
RET	5979	MSKCC	GRCh37	10	43609052	43609052	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	198	785	0	ENST00000355710.3:c.1808A>T	p.Lys603Ile	p.K603I	ENST00000355710	NM_020975.4	603	aAa/aTa																																																																															
TET1	80312	MSKCC	GRCh37	10	70446346	70446346	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	321	575	1	ENST00000373644.4:c.5286G>T	p.Met1762Ile	p.M1762I	ENST00000373644	NM_030625.2	1762	atG/atT																																																																															
ETV6	2120	MSKCC	GRCh37	12	11905488	11905489	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCG			P-0047126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	128	445	0	ENST00000396373.4:c.139_141dup	p.Ser47dup	p.S47dup	ENST00000396373	NM_001987.4	47	-/TCG																																																																															
POLE	5426	MSKCC	GRCh37	12	133250256	133250256	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	284	801	0	ENST00000320574.5:c.1264C>G	p.His422Asp	p.H422D	ENST00000320574	NM_006231.2	422	Cat/Gat																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857262	9857262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	197	647	0	ENST00000330684.3:c.4139G>A	p.Gly1380Glu	p.G1380E	ENST00000330684	NM_001134407.1	1380	gGg/gAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15973617	15973617	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	122	470	0	ENST00000268712.3:c.4375C>G	p.Leu1459Val	p.L1459V	ENST00000268712	NM_006311.3	1459	Ctt/Gtt																																																																															
NF1	4763	MSKCC	GRCh37	17	29664565	29664565	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	102	498	0	ENST00000358273.4:c.6607G>C	p.Glu2203Gln	p.E2203Q	ENST00000358273	NM_001042492.2	2203	Gaa/Caa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468358	89468400	+	frameshift_variant	Frame_Shift_Del	DEL	AATTTGGAGAGGTGTGCAGTGGTCGCTTAAAACTTCCTTCAAA	AATTTGGAGAGGTGTGCAGTGGTCGCTTAAAACTTCCTTCAAA	-			P-0047126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	21	221	0	ENST00000336596.2:c.1894_1936del	p.Phe632LysfsTer10	p.F632Kfs*10	ENST00000336596	NM_005233.5	631	gAATTTGGAGAGGTGTGCAGTGGTCGCTTAAAACTTCCTTCAAAa/ga																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001343	150001343	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	109	589	0	ENST00000253339.5:c.2261G>C	p.Arg754Thr	p.R754T	ENST00000253339		754	aGa/aCa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518324	8518325	+	missense_variant	Missense_Mutation	DNP	AT	AT	CA			P-0047126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	71	362	0	ENST00000356435.5:c.1066_1067delinsTG	p.Ile356Cys	p.I356C	ENST00000356435		356	ATt/TGt																																																																															
TEK	7010	MSKCC	GRCh37	9	27220100	27220100	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	187	701	0	ENST00000380036.4:c.3157C>A	p.Gln1053Lys	p.Q1053K	ENST00000380036	NM_000459.3	1053	Cag/Aag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2951891	2951891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116583746		P-0047133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	292	583	1	ENST00000396946.4:c.3059C>T	p.Thr1020Met	p.T1020M	ENST00000396946	NM_032415.4	1020	aCg/aTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	154	330	0	ENST00000349496.5:c.1982G>A	p.Arg661Gln	p.R661Q	ENST00000349496	NM_001904.3	661	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0047133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	71	325	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0047133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	178	367	0	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944273	81944273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	342	651	0	ENST00000359376.3:c.1882G>A	p.Glu628Lys	p.E628K	ENST00000359376	NM_002661.3	628	Gag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108099930	108099930	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	31	143	0	ENST00000278616.4:c.211G>T	p.Glu71Ter	p.E71*	ENST00000278616	NM_000051.3	71	Gaa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49442925	49442925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	298	563	0	ENST00000301067.7:c.3983G>A	p.Arg1328Gln	p.R1328Q	ENST00000301067	NM_003482.3	1328	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578535	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTG			P-0047133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	422	773	0	ENST00000269305.4:c.393_395dup	p.Asn131dup	p.N131dup	ENST00000269305	NM_001126112.2	131	aag/aaCAAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265988	41266211	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGAT	CTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGAT	-			P-0047133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	14	170	0	ENST00000349496.5:c.14-29_208del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0047140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	77	245	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913233		P-0047140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	232	659	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426492	47426492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	154	558	0	ENST00000377045.4:c.835C>T	p.Arg279Cys	p.R279C	ENST00000377045	NM_001654.4	279	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916643	178916666	+	inframe_deletion	In_Frame_Del	DEL	GTGGGGCATCCACTTGATGCCCCC	GTGGGGCATCCACTTGATGCCCCC	-			P-0047140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	34	257	0	ENST00000263967.3:c.30_53del	p.Trp11_Pro18del	p.W11_P18del	ENST00000263967	NM_006218.2	10	ctGTGGGGCATCCACTTGATGCCCCCa/cta																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0047144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	80	736	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0047144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	196	613	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
CDH1	999	MSKCC	GRCh37	16	68835780	68835781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0047144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	53	506	0	ENST00000261769.5:c.377dup	p.Pro127AlafsTer41	p.P127Afs*41	ENST00000261769	NM_004360.3	124	cgc/cgCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917681	178917681	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	67	159	0	ENST00000263967.3:c.556G>C	p.Asp186His	p.D186H	ENST00000263967	NM_006218.2	186	Gat/Cat																																																																															
CCND1	595	MSKCC	GRCh37	11	69462869	69462869	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	87	826	1	ENST00000227507.2:c.682C>G	p.Arg228Gly	p.R228G	ENST00000227507	NM_053056.2	228	Cgc/Ggc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117383	115117384	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0047144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	130	354	4	ENST00000257566.3:c.790_791del	p.Pro264LeufsTer2	p.P264Lfs*2	ENST00000257566	NM_016569.3	264	CCt/t																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436722	110436722	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	117	866	0	ENST00000375856.3:c.1679C>G	p.Ser560Trp	p.S560W	ENST00000375856	NM_003749.2	560	tCg/tGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919287	178919287	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	81	160	0	ENST00000263967.3:c.772G>C	p.Asp258His	p.D258H	ENST00000263967	NM_006218.2	258	Gat/Cat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56176579	56176579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	65	423	0	ENST00000399503.3:c.2129G>A	p.Cys710Tyr	p.C710Y	ENST00000399503	NM_005921.1	710	tGc/tAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	120	310	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0047151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	403	578	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18466994	18466994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	130	241	1	ENST00000266497.5:c.1133G>A	p.Arg378Gln	p.R378Q	ENST00000266497		378	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112173668	112173668	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	127	270	0	ENST00000257430.4:c.2377C>T	p.Gln793Ter	p.Q793*	ENST00000257430	NM_000038.5	793	Caa/Taa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262204	10262204	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	299	545	3	ENST00000340748.4:c.2087T>C	p.Met696Thr	p.M696T	ENST00000340748		696	aTg/aCg																																																																															
APC	324	MSKCC	GRCh37	5	112175770	112175771	+	frameshift_variant	Frame_Shift_Ins	INS	GG	GG	AGA			P-0047151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	109	229	1	ENST00000257430.4:c.4479_4480delinsAGA	p.Ser1495LysfsTer19	p.S1495Kfs*19	ENST00000257430	NM_000038.5	1493	acGGaa/acAGAaa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45371712	45371712	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0047151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	152	262	1	ENST00000262160.6:c.1279C>T	p.Arg427Ter	p.R427*	ENST00000262160	NM_005901.5	427	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173657	112173657	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	129	264	0	ENST00000257430.4:c.2366A>G	p.Gln789Arg	p.Q789R	ENST00000257430	NM_000038.5	789	cAg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0047154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	779	528	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0047154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	53	475	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	125	488	0	ENST00000374080.3:c.130G>A	p.Gly44Ser	p.G44S	ENST00000374080		44	Ggt/Agt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0047154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	419	603	2	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380254	25380254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	96	409	0	ENST00000256078.4:c.204G>T	p.Arg68Ser	p.R68S	ENST00000256078	NM_033360.2	68	agG/agT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030325	180030325	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115824945		P-0047154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	192	681	0	ENST00000261937.6:c.3959G>A	p.Arg1320Gln	p.R1320Q	ENST00000261937	NM_182925.4	1320	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	139	355	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112173975	112173975	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0047154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	57	242	0	ENST00000257430.4:c.2684C>G	p.Ser895Ter	p.S895*	ENST00000257430	NM_000038.5	895	tCa/tGa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120244	70120244	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	541	682	1	ENST00000245479.2:c.1246C>T	p.Gln416Ter	p.Q416*	ENST00000245479	NM_000346.3	416	Caa/Taa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178340	56178341	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	47	219	0	ENST00000399503.3:c.3315dup	p.Ile1106TyrfsTer4	p.I1106Yfs*4	ENST00000399503	NM_005921.1	1105	gtt/gTtt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30095727	30095727	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	13	305	0	ENST00000331968.5:c.1761A>C	p.Glu587Asp	p.E587D	ENST00000331968	NM_002742.2	587	gaA/gaC																																																																															
APC	324	MSKCC	GRCh37	5	112175756	112175759	+	frameshift_variant	Frame_Shift_Del	DEL	TTAC	TTAC	-			P-0047154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	34	237	0	ENST00000257430.4:c.4465_4468del	p.Leu1489IlefsTer17	p.L1489Ifs*17	ENST00000257430	NM_000038.5	1489	TTACat/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0047195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	158	552	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0047195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	62	288	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0047195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	64	217	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0047200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	92	529	3	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0047200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	50	349	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0047200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	45	258	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508389	106508389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	45	316	1	ENST00000359195.3:c.383C>T	p.Thr128Met	p.T128M	ENST00000359195	NM_002649.2	128	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	16	183	1	ENST00000257430.4:c.4067C>A	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tAa																																																																															
JUN	3725	MSKCC	GRCh37	1	59248242	59248243	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	18	72	0	ENST00000371222.2:c.500dup	p.Pro168AlafsTer142	p.P168Afs*142	ENST00000371222	NM_002228.3	167	ccg/ccCg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43773107	43773108	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	88	532	0	ENST00000382044.4:c.484dup	p.Ser162PhefsTer5	p.S162Ffs*5	ENST00000382044	NM_001141980.1	162	tcc/tTcc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40858179	40858179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	67	545	0	ENST00000428826.2:c.1685G>A	p.Arg562His	p.R562H	ENST00000428826		562	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	78	298	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	279	423	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435420	110435420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	219	724	0	ENST00000375856.3:c.2981C>T	p.Pro994Leu	p.P994L	ENST00000375856	NM_003749.2	994	cCg/cTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207203	1207203	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	429	649	0	ENST00000326873.7:c.290+1G>T		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																																
TCF3	6929	MSKCC	GRCh37	19	1625652	1625652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	283	973	1	ENST00000344749.5:c.422C>T	p.Ser141Leu	p.S141L	ENST00000344749	NM_001136139.2	141	tCg/tTg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021818	71021818	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs869025203		P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	156	217	0	ENST00000318789.4:c.1540C>T	p.Arg514Cys	p.R514C	ENST00000318789	NM_032682.5	514	Cgt/Tgt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518415	8518415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	80	264	0	ENST00000356435.5:c.976C>T	p.Pro326Ser	p.P326S	ENST00000356435		326	Cca/Tca																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442080	52442080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	364	466	0	ENST00000460680.1:c.269C>T	p.Ser90Phe	p.S90F	ENST00000460680	NM_004656.3	90	tCt/tTt																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130682	29130682	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	151	393	0	ENST00000328354.6:c.28C>T	p.Gln10Ter	p.Q10*	ENST00000328354	NM_007194.3	10	Cag/Tag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857965	9857965	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	157	577	0	ENST00000330684.3:c.3436del	p.Asp1146ThrfsTer22	p.D1146Tfs*22	ENST00000330684	NM_001134407.1	1146	Gac/ac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11100119	11100119	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	418	581	0	ENST00000344626.4:c.1245G>T	p.Gln415His	p.Q415H	ENST00000344626	NM_003072.3	415	caG/caT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187525696	187525696	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	128	404	0	ENST00000441802.2:c.10383G>T	p.Gln3461His	p.Q3461H	ENST00000441802	NM_005245.3	3461	caG/caT																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149511631	149511631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	349	574	1	ENST00000261799.4:c.1154G>T	p.Arg385Leu	p.R385L	ENST00000261799	NM_002609.3	385	cGc/cTc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570289	87570289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	177	701	0	ENST00000277120.3:c.2029G>T	p.Ala677Ser	p.A677S	ENST00000277120		677	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0047205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	138	559	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0047205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	65	258	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175548	112175548	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	34	270	0	ENST00000257430.4:c.4260delC	p.Ser1421ValfsTer52	p.S1421Vfs*52	ENST00000257430	NM_000038.5	1419	agC/ag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912182	114912182	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	67	511	2	ENST00000543371.1:c.1252T>C	p.Ser418Pro	p.S418P	ENST00000543371	NM_001198531.1	418	Tcc/Ccc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426256	49426256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	164	844	0	ENST00000301067.7:c.12232G>A	p.Val4078Ile	p.V4078I	ENST00000301067	NM_003482.3	4078	Gtc/Atc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347071	347071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	59	879	2	ENST00000262320.3:c.1940G>A	p.Arg647His	p.R647H	ENST00000262320	NM_003502.3	647	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045684-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	124	428	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045684-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	34	774	2				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0045684-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			990	74	1102	8	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933761	39933761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045684-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			772	50	871	3	ENST00000378444.4:c.838G>A	p.Val280Ile	p.V280I	ENST00000378444	NM_001123385.1	280	Gtc/Atc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495336	56495336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045684-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			780	46	581	0	ENST00000267101.3:c.3526A>G	p.Thr1176Ala	p.T1176A	ENST00000267101	NM_001982.3	1176	Acc/Gcc																																																																															
APC	324	MSKCC	GRCh37	5	112178462	112178462	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045684-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			301	31	161	0	ENST00000257430.4:c.7171A>G	p.Ile2391Val	p.I2391V	ENST00000257430	NM_000038.5	2391	Att/Gtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0046939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	292	563	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0046939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	18	471	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0046939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	59	243	1	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175788	112175788	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	74	215	0	ENST00000257430.4:c.4497delA	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1499	ggA/gg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123784	11123784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	81	464	0	ENST00000344626.4:c.2434C>T	p.Leu812Phe	p.L812F	ENST00000344626	NM_003072.3	812	Ctc/Ttc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450243	50450243	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757521297		P-0046939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	257	394	0	ENST00000331340.3:c.427C>T	p.Arg143Trp	p.R143W	ENST00000331340	NM_006060.4	143	Cgg/Tgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188210	32188210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	35	739	0	ENST00000375023.3:c.1131C>A	p.Phe377Leu	p.F377L	ENST00000375023	NM_004557.3	377	ttC/ttA																																																																															
RAD21	5885	MSKCC	GRCh37	8	117868928	117868928	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	61	271	0	ENST00000297338.2:c.771G>C	p.Glu257Asp	p.E257D	ENST00000297338	NM_006265.2	257	gaG/gaC																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412472	63412473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	326	387	0	ENST00000330258.3:c.694dup	p.Gln232ProfsTer20	p.Q232Pfs*20	ENST00000330258	NM_152424.3	232	caa/cCaa																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40368097	40368097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	197	422	0	ENST00000293328.3:c.1408G>A	p.Val470Ile	p.V470I	ENST00000293328	NM_012448.3	470	Gtt/Att																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740642	58740642	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	127	374	0	ENST00000305921.3:c.1547C>A	p.Ser516Ter	p.S516*	ENST00000305921	NM_003620.3	516	tCa/tAa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89882319	89882320	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0046944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	178	440	1	ENST00000389301.3:c.154_155del	p.Arg52LysfsTer11	p.R52Kfs*11	ENST00000389301	NM_000135.2	52	CGa/a																																																																															
APC	324	MSKCC	GRCh37	5	112151290	112151291	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	CT			P-0046944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			15	137	180	1	ENST00000257430.4:c.933_933+1delinsCT		p.X311_splice	ENST00000257430	NM_000038.5	311																																																																																
WHSC1L1	54904	MSKCC	GRCh37	8	38135369	38135840	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATAAGCCCAGCTGATGACCCACAAACTAATCCAGGTGCCCAATTGCCAGCAGGTTCCTGAGATGGTCACAAACACACAAACAGACTTCTTTTTTTTTTTTTTTTTGAGATAGAGTCTTGCACTGTCACCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGCAAGCTCCGCATCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCCATCACCATGCCCAGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCGGCCAAACAGACTTCTTAACAGCCCTACTCCTTATCGCCTGTTGACTGGGGGCGCTCCCCTGCAAGACTGACCTTTGGCCGCACTCCTA	GATAAGCCCAGCTGATGACCCACAAACTAATCCAGGTGCCCAATTGCCAGCAGGTTCCTGAGATGGTCACAAACACACAAACAGACTTCTTTTTTTTTTTTTTTTTGAGATAGAGTCTTGCACTGTCACCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGCAAGCTCCGCATCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCCATCACCATGCCCAGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCGGCCAAACAGACTTCTTAACAGCCCTACTCCTTATCGCCTGTTGACTGGGGGCGCTCCCCTGCAAGACTGACCTTTGGCCGCACTCCTA	-			P-0046944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	1625	0	0	ENST00000317025.8:c.3851_3867+455del		p.X1284_splice	ENST00000317025	NM_023034.1	1284																																																																																
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	184	594	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11168992	11168992	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	217	648	0	ENST00000344626.4:c.4486G>T	p.Glu1496Ter	p.E1496*	ENST00000344626	NM_003072.3	1496	Gag/Tag																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2494692	2494692	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	91	721	0	ENST00000355716.4:c.832G>T	p.Gly278Trp	p.G278W	ENST00000355716	NM_003820.2	278	Ggg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245528	153245528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	96	272	0	ENST00000281708.4:c.1663G>A	p.Val555Met	p.V555M	ENST00000281708	NM_033632.3	555	Gtg/Atg																																																																															
MGA	23269	MSKCC	GRCh37	15	41961219	41961219	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	219	307	0	ENST00000219905.7:c.127A>T	p.Thr43Ser	p.T43S	ENST00000219905	NM_001164273.1	43	Act/Tct																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923488	9923488	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	163	375	0	ENST00000330684.3:c.1799C>G	p.Thr600Arg	p.T600R	ENST00000330684	NM_001134407.1	600	aCa/aGa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584525	48584525	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	46	337	0	ENST00000342988.3:c.698A>T	p.His233Leu	p.H233L	ENST00000342988	NM_005359.5	233	cAt/cTt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217771	2217771	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	233	671	0	ENST00000398665.3:c.2545G>T	p.Gly849Cys	p.G849C	ENST00000398665	NM_032482.2	849	Ggc/Tgc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257890	19257890	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	296	965	0	ENST00000162023.5:c.496C>G	p.Arg166Gly	p.R166G	ENST00000162023		166	Cgc/Ggc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61722607	61722607	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	68	114	0	ENST00000401558.2:c.1030A>G	p.Arg344Gly	p.R344G	ENST00000401558	NM_003400.3	344	Agg/Ggg																																																																															
EP300	2033	MSKCC	GRCh37	22	41554484	41554484	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	125	401	1	ENST00000263253.7:c.3571del	p.Tyr1191IlefsTer36	p.Y1191Ifs*36	ENST00000263253	NM_001429.3	1190	acT/ac																																																																															
ATR	545	MSKCC	GRCh37	3	142231217	142231217	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	76	349	0	ENST00000350721.4:c.4737G>C	p.Gln1579His	p.Q1579H	ENST00000350721	NM_001184.3	1579	caG/caC																																																																															
NPM1	4869	MSKCC	GRCh37	5	170818789	170818789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	53	231	0	ENST00000296930.5:c.338G>C	p.Gly113Ala	p.G113A	ENST00000296930	NM_002520.6	113	gGa/gCa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522034	157522034	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	77	500	1	ENST00000346085.5:c.4306G>A	p.Gly1436Arg	p.G1436R	ENST00000346085	NM_020732.3	1436	Ggg/Agg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68950434	68950434	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	37	342	0	ENST00000288368.4:c.746G>C	p.Cys249Ser	p.C249S	ENST00000288368	NM_024870.2	249	tGt/tCt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225362535	225362540	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGTC	GCTGTC	T			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	72	298	0	ENST00000264414.4:c.1637_1642delinsA	p.Arg546HisfsTer21	p.R546Hfs*21	ENST00000264414	NM_003590.4	546	cGACAGCtc/cAtc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	12	98	0				ENST00000310581	NM_198253.2																																																																																	
KEAP1	9817	MSKCC	GRCh37	19	10610073	10610073	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	73	507	0	ENST00000171111.5:c.637G>T	p.Glu213Ter	p.E213*	ENST00000171111	NM_203500.1	213	Gag/Tag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921499	39921499	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	59	242	0	ENST00000378444.4:c.4321C>T	p.Gln1441Ter	p.Q1441*	ENST00000378444	NM_001123385.1	1441	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579312	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	70	472	0	ENST00000269305.4:c.375_375+1delinsTT		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
WT1	7490	MSKCC	GRCh37	11	32450158	32450158	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	63	552	2	ENST00000332351.3:c.654C>A	p.Ser218Arg	p.S218R	ENST00000332351	NM_024426.4	218	agC/agA																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588111	69588111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	64	450	0	ENST00000168712.1:c.587C>T	p.Thr196Ile	p.T196I	ENST00000168712	NM_002007.2	196	aCc/aTc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94204894	94204894	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	17	249	0	ENST00000323929.3:c.691G>C	p.Glu231Gln	p.E231Q	ENST00000323929	NM_005591.3	231	Gaa/Caa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164837	47164837	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	47	197	0	ENST00000409792.3:c.1289C>G	p.Ser430Cys	p.S430C	ENST00000409792	NM_014159.6	430	tCt/tGt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52649448	52649448	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	72	329	0	ENST00000394830.3:c.1843G>T	p.Glu615Ter	p.E615*	ENST00000394830	NM_018313.4	615	Gag/Tag																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902728	1902728	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	73	437	0	ENST00000382891.5:c.347C>G	p.Pro116Arg	p.P116R	ENST00000382891	NM_133335.3	116	cCt/cGt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127397	55127397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	42	379	0	ENST00000257290.5:c.185C>A	p.Ser62Tyr	p.S62Y	ENST00000257290	NM_006206.4	62	tCt/tAt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127409	55127409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	54	381	0	ENST00000257290.5:c.197G>A	p.Ser66Asn	p.S66N	ENST00000257290	NM_006206.4	66	aGc/aAc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526521	31526523	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	31	531	0	ENST00000344624.3:c.517_519del	p.Ser173del	p.S173del	ENST00000344624		173	TCT/-																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045730	26045730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	76	302	0	ENST00000540144.1:c.92C>A	p.Pro31Gln	p.P31Q	ENST00000540144	NM_003531.2	31	cCg/cAg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683662	162683662	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	24	208	0	ENST00000366898.1:c.307A>G	p.Thr103Ala	p.T103A	ENST00000366898	NM_004562.2	103	Act/Gct																																																																															
HGF	3082	MSKCC	GRCh37	7	81350087	81350087	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	24	246	0	ENST00000222390.5:c.1245G>A	p.Trp415Ter	p.W415*	ENST00000222390	NM_000601.4	415	tgG/tgA																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5534951	5534951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	53	334	0	ENST00000397747.3:c.262C>T	p.His88Tyr	p.H88Y	ENST00000397747	NM_025239.3	88	Cac/Tac																																																																															
MET	4233	MSKCC	GRCh37	7	116411818	116412557	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCATGAGTTCTGGGCACTGGGTCAAAGTCTCCTGGGGCCCATGATAGCCGTCTTTAACAAGCTCTTTCTTTCTCTCTGTTTTAAGATCTGGGCAGTGAATTAGTTCGCTACGATGCAAGAGTACACACTCCTCATTTGGATAGGCTTGTAAGTGCCCGAAGTGTAAGCCCAACTACAGAAATGGTTTCAAATGAATCTGTAGACTACCGAGCTACTTTTCCAGAAGGTATATTTCAGTTTATTGTTCTGAGAAATACCTATACATATACCTCAGTGGGTTGTGACATTGTTGTTTATTTTTGGTTTTGCATTTATATTTTTATAAAAACCTAAAGGAAGTATTTACCTCTGCCAAGTAAGTATTTGACACAAAATTACATGGCTCTTAATTTTAAAAGAACCCATGTATATATTACATTATGATTTTAGAGTCCATAAGCTCTCATTTCACAAAAAGGTTAATTTGAGCAAAAGTAATTTGTTTATCATCTAAGTGCAATAGTAAGAAATTGCGAAGCTCTCTTTTACAATCCAGGAAGAGTTAAGTTACAAAATATACTTATTTAAATGTAAGTTGGAACTGCTACATTTTTTACCTGTTGAAGCCCAAACATTGAAATTATACTGTTAGTAATTCTTCGAAGTGTTTTCAATGAACTGTTAGTACACAGCCTTTTTCCCACCATATTCTAGGACTTGAATGTATTTTGAGACTTAGCCAAGGAAAACCTTCAATTATG	CCATGAGTTCTGGGCACTGGGTCAAAGTCTCCTGGGGCCCATGATAGCCGTCTTTAACAAGCTCTTTCTTTCTCTCTGTTTTAAGATCTGGGCAGTGAATTAGTTCGCTACGATGCAAGAGTACACACTCCTCATTTGGATAGGCTTGTAAGTGCCCGAAGTGTAAGCCCAACTACAGAAATGGTTTCAAATGAATCTGTAGACTACCGAGCTACTTTTCCAGAAGGTATATTTCAGTTTATTGTTCTGAGAAATACCTATACATATACCTCAGTGGGTTGTGACATTGTTGTTTATTTTTGGTTTTGCATTTATATTTTTATAAAAACCTAAAGGAAGTATTTACCTCTGCCAAGTAAGTATTTGACACAAAATTACATGGCTCTTAATTTTAAAAGAACCCATGTATATATTACATTATGATTTTAGAGTCCATAAGCTCTCATTTCACAAAAAGGTTAATTTGAGCAAAAGTAATTTGTTTATCATCTAAGTGCAATAGTAAGAAATTGCGAAGCTCTCTTTTACAATCCAGGAAGAGTTAAGTTACAAAATATACTTATTTAAATGTAAGTTGGAACTGCTACATTTTTTACCTGTTGAAGCCCAAACATTGAAATTATACTGTTAGTAATTCTTCGAAGTGTTTTCAATGAACTGTTAGTACACAGCCTTTTTCCCACCATATTCTAGGACTTGAATGTATTTTGAGACTTAGCCAAGGAAAACCTTCAATTATG	-			P-0046961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	227	785	0	ENST00000397752.3:c.2888-79_3028+520del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	23	331	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602329	10602329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	178	1194	0	ENST00000171111.5:c.1249G>T	p.Gly417Trp	p.G417W	ENST00000171111	NM_203500.1	417	Ggg/Tgg																																																																															
STK11	6794	MSKCC	GRCh37	19	1218415	1218415	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs112675807		P-0046963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	78	493	0	ENST00000326873.7:c.291-1G>A		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																																
TRAF7	84231	MSKCC	GRCh37	16	2220720	2220720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	43	559	1	ENST00000326181.6:c.337G>A	p.Glu113Lys	p.E113K	ENST00000326181	NM_032271.2	113	Gag/Aag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89831475	89831475	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0046963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	53	513	0	ENST00000389301.3:c.2602-1G>C		p.X868_splice	ENST00000389301	NM_000135.2	868																																																																																
RBM10	8241	MSKCC	GRCh37	X	47039609	47039609	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0046963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	62	301	0	ENST00000329236.7:c.829-2A>T		p.X277_splice	ENST00000329236	NM_001204466.1	277																																																																																
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	130	545	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	115	472	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	106	419	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877366	28877366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	131	428	0	ENST00000282397.4:c.3955G>A	p.Ala1319Thr	p.A1319T	ENST00000282397	NM_002019.4	1319	Gcg/Acg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265313	152265313	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	80	305	0	ENST00000206249.3:c.766C>T	p.Arg256Ter	p.R256*	ENST00000206249	NM_000125.3	256	Cga/Tga																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368252	45368252	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	77	390	0	ENST00000262160.6:c.1350C>G	p.Asp450Glu	p.D450E	ENST00000262160	NM_005901.5	450	gaC/gaG																																																																															
APC	324	MSKCC	GRCh37	5	112175551	112175552	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	74	315	0	ENST00000257430.4:c.4260_4261del	p.Ser1421Ter	p.S1421*	ENST00000257430	NM_000038.5	1420	ccCAgt/ccgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133226349	133226349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	176	787	0	ENST00000320574.5:c.3709G>A	p.Glu1237Lys	p.E1237K	ENST00000320574	NM_006231.2	1237	Gag/Aag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972432	32972432	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	83	542	0	ENST00000380152.3:c.9782A>G	p.Asp3261Gly	p.D3261G	ENST00000380152		3261	gAc/gGc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533793	63533793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	177	648	0	ENST00000307078.5:c.1361C>T	p.Ser454Phe	p.S454F	ENST00000307078	NM_004655.3	454	tCt/tTt																																																																															
RRAS	6237	MSKCC	GRCh37	19	50139010	50139010	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	214	809	0	ENST00000246792.3:c.553C>A	p.Gln185Lys	p.Q185K	ENST00000246792	NM_006270.3	185	Cag/Aag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662283	227662283	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	163	618	0	ENST00000305123.5:c.1172G>C	p.Ser391Thr	p.S391T	ENST00000305123	NM_005544.2	391	aGt/aCt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32172008	32172008	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	236	670	1	ENST00000375023.3:c.3024C>A	p.Asp1008Glu	p.D1008E	ENST00000375023	NM_004557.3	1008	gaC/gaA																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870933	12870933	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	161	272	0	ENST00000228872.4:c.160G>T	p.Glu54Ter	p.E54*	ENST00000228872	NM_004064.3	54	Gag/Tag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46242705	46242705	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0046987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	90	267	0	ENST00000334344.6:c.1667T>G	p.Leu556Ter	p.L556*	ENST00000334344	NM_152641.2	556	tTa/tGa																																																																															
RB1	5925	MSKCC	GRCh37	13	49033857	49033857	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	141	285	0	ENST00000267163.4:c.1994T>G	p.Leu665Arg	p.L665R	ENST00000267163	NM_000321.2	665	cTt/cGt																																																																															
ATR	545	MSKCC	GRCh37	3	142281342	142281342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	139	321	0	ENST00000350721.4:c.902C>T	p.Thr301Ile	p.T301I	ENST00000350721	NM_001184.3	301	aCa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0047008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	64	852	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0047013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	29	352	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0047049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	476	430	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023209	27023225	+	frameshift_variant	Frame_Shift_Del	DEL	GAACGCGGGCCCTAGGC	GAACGCGGGCCCTAGGC	AACG			P-0047049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	62	141	0	ENST00000324856.7:c.315_331delinsAACG	p.Asn106ThrfsTer4	p.N106Tfs*4	ENST00000324856	NM_006015.4	105	ggGAACGCGGGCCCTAGGCcc/ggAACGcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0047055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	119	593	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0047055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	203	481	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																															
FH	2271	MSKCC	GRCh37	1	241675310	241675310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	113	355	0	ENST00000366560.3:c.512G>A	p.Ser171Asn	p.S171N	ENST00000366560	NM_000143.3	171	aGc/aAc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479844	67479844	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	69	571	0	ENST00000327367.4:c.1151A>G	p.Tyr384Cys	p.Y384C	ENST00000327367	NM_005902.3	384	tAc/tGc																																																																															
MET	4233	MSKCC	GRCh37	7	116409777	116409777	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	76	209	0	ENST00000397752.3:c.2662C>A	p.His888Asn	p.H888N	ENST00000397752	NM_000245.2	888	Cat/Aat																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2494324	2494324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143033733		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	180	926	3	ENST00000355716.4:c.715G>A	p.Val239Ile	p.V239I	ENST00000355716	NM_003820.2	239	Gtc/Atc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073877	8073877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	53	408	0	ENST00000377482.5:c.782C>T	p.Ala261Val	p.A261V	ENST00000377482	NM_018948.3	261	gCc/gTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023144	27023144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	26	36	0	ENST00000324856.7:c.250G>A	p.Gly84Ser	p.G84S	ENST00000324856	NM_006015.4	84	Ggc/Agc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023542	27023542	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	176	520	0	ENST00000324856.7:c.651del	p.Asn218ThrfsTer14	p.N218Tfs*14	ENST00000324856	NM_006015.4	216	taC/ta																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057739	27057739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	221	820	0	ENST00000324856.7:c.1447C>T	p.Pro483Ser	p.P483S	ENST00000324856	NM_006015.4	483	Cca/Tca																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598940	28598940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	246	981	1	ENST00000253063.3:c.500C>T	p.Ala167Val	p.A167V	ENST00000253063	NM_031459.4	167	gCg/gTg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46733195	46733195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	164	631	0	ENST00000371975.4:c.956G>A	p.Arg319Gln	p.R319Q	ENST00000371975	NM_003579.3	319	cGg/cAg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	47	388	2	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258733	115258733	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	95	404	0	ENST00000369535.4:c.49A>G	p.Ser17Gly	p.S17G	ENST00000369535	NM_002524.4	17	Agc/Ggc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115275425	115275425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	38	359	1	ENST00000438362.2:c.988C>T	p.Pro330Ser	p.P330S	ENST00000438362	NM_001242891.1	330	Cca/Tca																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458306	120458306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	166	820	2	ENST00000256646.2:c.7039C>T	p.Arg2347Cys	p.R2347C	ENST00000256646	NM_024408.3	2347	Cgt/Tgt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462204	120462204	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs766543218		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	75	517	0	ENST00000256646.2:c.5512C>T	p.Arg1838Ter	p.R1838*	ENST00000256646	NM_024408.3	1838	Cga/Tga																																																																															
CDC73	79577	MSKCC	GRCh37	1	193181525	193181525	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	19	240	0	ENST00000367435.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000367435	NM_024529.4	358	Cga/Tga																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206652330	206652330	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	242	1035	3	ENST00000367120.3:c.1042del	p.Arg348AspfsTer32	p.R348Dfs*32	ENST00000367120	NM_014002.3	346	gCc/gc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	118	619	0	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																															
TET1	80312	MSKCC	GRCh37	10	70332273	70332273	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	40	299	2	ENST00000373644.4:c.184del	p.Thr62GlnfsTer13	p.T62Qfs*13	ENST00000373644	NM_030625.2	60	Aaa/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	86	438	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741882	17741882	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	38	106	2	ENST00000250003.3:c.557del	p.Pro186ArgfsTer25	p.P186Rfs*25	ENST00000250003	NM_002478.4	185	Ccc/cc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998373	100998373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	49	88	0	ENST00000325455.5:c.1429C>T	p.Pro477Ser	p.P477S	ENST00000325455	NM_001202474.3	477	Ccg/Tcg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999149	100999149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	56	947	1	ENST00000325455.5:c.653C>T	p.Ala218Val	p.A218V	ENST00000325455	NM_001202474.3	218	gCg/gTg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870978	12870978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	151	473	1	ENST00000228872.4:c.205C>T	p.Pro69Ser	p.P69S	ENST00000228872	NM_004064.3	69	Ccc/Tcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436109	49436109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	100	523	1	ENST00000301067.7:c.5872C>T	p.Arg1958Cys	p.R1958C	ENST00000301067	NM_003482.3	1958	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445500	49445500	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	521	760	3	ENST00000301067.7:c.1966delC	p.Leu656CysfsTer274	p.L656Cfs*274	ENST00000301067	NM_003482.3	656	Ctg/tg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56486785	56486785	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	167	638	0	ENST00000267101.3:c.1199A>G	p.Gln400Arg	p.Q400R	ENST00000267101	NM_001982.3	400	cAg/cGg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863319	57863319	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	243	925	1	ENST00000228682.2:c.1418del	p.Gly473AlafsTer40	p.G473Afs*40	ENST00000228682	NM_005269.2	472	Ggg/gg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112910749	112910749	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	83	319	0	ENST00000351677.2:c.758C>T	p.Thr253Ile	p.T253I	ENST00000351677	NM_002834.3	253	aCa/aTa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431332	121431332	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	137	468	0	ENST00000257555.6:c.536A>G	p.His179Arg	p.H179R	ENST00000257555		179	cAt/cGt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121435295	121435296	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	245	1032	0	ENST00000257555.6:c.1330_1331del	p.Gln444GlufsTer104	p.Q444Efs*104	ENST00000257555		443	gCA/g																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557684	21557684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	151	808	0	ENST00000382592.4:c.2161G>A	p.Ala721Thr	p.A721T	ENST00000382592	NM_014572.2	721	Gcc/Acc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608318	28608318	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	46	439	1	ENST00000241453.7:c.1738C>T	p.Gln580Ter	p.Q580*	ENST00000241453	NM_004119.2	580	Cag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911074	32911074	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	19	272	0	ENST00000380152.3:c.2588delA	p.Asn863IlefsTer11	p.N863Ifs*11	ENST00000380152		861	cAa/ca																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435129	110435129	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	295	782	4	ENST00000375856.3:c.3272del	p.Pro1091ArgfsTer15	p.P1091Rfs*15	ENST00000375856	NM_003749.2	1091	cCg/cg																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871728	35871728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	177	757	0	ENST00000216797.5:c.778C>T	p.Arg260Cys	p.R260C	ENST00000216797	NM_020529.2	260	Cgc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	41961687	41961687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	53	458	0	ENST00000219905.7:c.595C>T	p.Arg199Cys	p.R199C	ENST00000219905	NM_001164273.1	199	Cgt/Tgt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43708603	43708603	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	37	536	0	ENST00000382044.4:c.4693G>T	p.Gly1565Ter	p.G1565*	ENST00000382044	NM_001141980.1	1565	Gga/Tga																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748607	43748608	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	83	750	0	ENST00000382044.4:c.2198dup	p.Gln734SerfsTer7	p.Q734Sfs*7	ENST00000382044	NM_001141980.1	733	cct/ccCt																																																																															
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	50	333	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66774194	66774194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	214	1101	3	ENST00000307102.5:c.670G>A	p.Val224Met	p.V224M	ENST00000307102	NM_002755.3	224	Gtg/Atg																																																																															
BLM	641	MSKCC	GRCh37	15	91303500	91303500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	25	258	1	ENST00000355112.3:c.1211G>A	p.Arg404Gln	p.R404Q	ENST00000355112	NM_000057.2	404	cGg/cAg																																																																															
BLM	641	MSKCC	GRCh37	15	91310208	91310208	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs747341586		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	28	185	0	ENST00000355112.3:c.2268del	p.Asp757ThrfsTer4	p.D757Tfs*4	ENST00000355112	NM_000057.2	754	tcA/tc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99456274	99456274	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	49	286	0	ENST00000268035.6:c.1591C>T	p.Pro531Ser	p.P531S	ENST00000268035	NM_000875.3	531	Ccc/Tcc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	222	838	1	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2096132	2096133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs763525759		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	146	866	4	ENST00000219066.1:c.374dup	p.Val127GlyfsTer43	p.V127Gfs*43	ENST00000219066	NM_002528.5	125	cca/ccCa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647564	3647564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	161	956	2	ENST00000294008.3:c.1499C>T	p.Thr500Met	p.T500M	ENST00000294008	NM_032444.2	500	aCg/aTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032118	10032118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	58	670	0	ENST00000330684.3:c.705G>T	p.Glu235Asp	p.E235D	ENST00000330684	NM_001134407.1	235	gaG/gaT																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644874	67644874	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	164	632	0	ENST00000264010.4:c.143del	p.Gly48ValfsTer14	p.G48Vfs*14	ENST00000264010	NM_006565.3	47	Ggg/gg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992127	72992127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	196	939	2	ENST00000268489.5:c.1918G>A	p.Val640Met	p.V640M	ENST00000268489	NM_006885.3	640	Gtg/Atg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89335041	89335041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	138	434	0	ENST00000301030.4:c.7837G>A	p.Ala2613Thr	p.A2613T	ENST00000301030	NM_001256183.1	2613	Gcc/Acc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15967385	15967385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	195	494	0	ENST00000268712.3:c.5218C>T	p.Pro1740Ser	p.P1740S	ENST00000268712	NM_006311.3	1740	Cca/Tca																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	166	804	18	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131231	17131231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	301	1033	1	ENST00000285071.4:c.221C>A	p.Pro74Gln	p.P74Q	ENST00000285071	NM_144997.5	74	cCg/cAg																																																																															
RARA	5914	MSKCC	GRCh37	17	38512402	38512402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	163	807	3	ENST00000254066.5:c.1319delC	p.Pro440ArgfsTer203	p.P440Rfs*203	ENST00000254066	NM_000964.3	438	gCc/gc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40457683	40457683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	207	840	0	ENST00000345506.4:c.1436C>T	p.Thr479Met	p.T479M	ENST00000345506	NM_003152.3	479	aCg/aTg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40865350	40865350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	183	685	0	ENST00000428826.2:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000428826		361	Cgc/Tgc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58711260	58711260	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	59	468	1	ENST00000305921.3:c.748C>T	p.Arg250Ter	p.R250*	ENST00000305921	NM_003620.3	250	Cga/Tga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554517	63554518	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	186	808	0	ENST00000307078.5:c.221dup	p.Leu75SerfsTer66	p.L75Sfs*66	ENST00000307078	NM_004655.3	74	cct/ccCt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	26	35	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78858943	78858943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	134	672	0	ENST00000306801.3:c.1978C>T	p.Arg660Trp	p.R660W	ENST00000306801	NM_020761.2	660	Cgg/Tgg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622410	1622410	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	191	682	0	ENST00000344749.5:c.554A>G	p.Tyr185Cys	p.Y185C	ENST00000344749	NM_001136139.2	185	tAc/tGc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2223460	2223460	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	123	614	0	ENST00000398665.3:c.3571T>G	p.Ser1191Ala	p.S1191A	ENST00000398665	NM_032482.2	1191	Tct/Gct																																																																															
GNA11	2767	MSKCC	GRCh37	19	3113445	3113445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	209	783	0	ENST00000078429.4:c.439C>T	p.Arg147Cys	p.R147C	ENST00000078429	NM_002067.2	147	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214618	5214618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	252	1061	0	ENST00000357368.4:c.4448G>A	p.Arg1483Gln	p.R1483Q	ENST00000357368	NM_002850.3	1483	cGg/cAg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262139	10262139	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	130	730	3	ENST00000340748.4:c.2152delA	p.Met718CysfsTer59	p.M718Cfs*59	ENST00000340748		718	Atg/tg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10270561	10270561	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	268	871	0	ENST00000340748.4:c.1079T>C	p.Leu360Pro	p.L360P	ENST00000340748		360	cTg/cCg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11024656	11024656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	154	719	0	ENST00000327064.4:c.773C>T	p.Pro258Leu	p.P258L	ENST00000327064	NM_199141.1	258	cCc/cTc																																																																															
CALR	811	MSKCC	GRCh37	19	13050873	13050873	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	94	494	0	ENST00000316448.5:c.404A>G	p.Asp135Gly	p.D135G	ENST00000316448	NM_004343.3	135	gAc/gGc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17952540	17952540	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	226	824	1	ENST00000458235.1:c.893T>C	p.Ile298Thr	p.I298T	ENST00000458235	NM_000215.3	298	aTc/aCc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214866	36214866	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	265	992	7	ENST00000222270.7:c.3296del	p.Gly1099AlafsTer83	p.G1099Afs*83	ENST00000222270	NM_014727.1	1098	Ggg/gg																																																																															
AXL	558	MSKCC	GRCh37	19	41737127	41737127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	295	1050	2	ENST00000301178.4:c.707G>A	p.Arg236His	p.R236H	ENST00000301178	NM_021913.4	236	cGc/cAc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	260	1187	3	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
CIC	23152	MSKCC	GRCh37	19	42795609	42795609	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	250	1059	3	ENST00000575354.2:c.2694del	p.Ala900ProfsTer24	p.A900Pfs*24	ENST00000575354	NM_015125.3	897	Ccc/cc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45856520	45856520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	210	901	1	ENST00000391945.4:c.1738G>A	p.Ala580Thr	p.A580T	ENST00000391945	NM_000400.3	580	Gcc/Acc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902293	50902293	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	276	1022	0	ENST00000440232.2:c.185T>C	p.Leu62Pro	p.L62P	ENST00000440232	NM_002691.3	62	cTg/cCg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	215	1073	5	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
ALK	238	MSKCC	GRCh37	2	30142900	30142900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	258	1002	0	ENST00000389048.3:c.626G>A	p.Arg209His	p.R209H	ENST00000389048	NM_004304.4	209	cGc/cAc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46574172	46574172	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	195	774	1	ENST00000263734.3:c.187T>A	p.Phe63Ile	p.F63I	ENST00000263734	NM_001430.4	63	Ttc/Atc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607783	46607783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	270	1013	2	ENST00000263734.3:c.1972C>T	p.Arg658Cys	p.R658C	ENST00000263734	NM_001430.4	658	Cgc/Tgc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630543	47630543	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	123	784	0	ENST00000233146.2:c.211+2T>G		p.X71_splice	ENST00000233146	NM_000251.2	71																																																																																
INHA	3623	MSKCC	GRCh37	2	220437288	220437288	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	228	1178	0	ENST00000243786.2:c.197del	p.Gly66AlafsTer61	p.G66Afs*61	ENST00000243786	NM_002191.3	64	ctG/ct																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662137	227662137	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	207	833	0	ENST00000305123.5:c.1318A>G	p.Ser440Gly	p.S440G	ENST00000305123	NM_005544.2	440	Agt/Ggt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	42	897	0	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662692	227662692	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	209	915	0	ENST00000305123.5:c.763G>T	p.Glu255Ter	p.E255*	ENST00000305123	NM_005544.2	255	Gag/Tag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	79	387	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275688	41275688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	128	505	0	ENST00000349496.5:c.1583G>A	p.Arg528His	p.R528H	ENST00000349496	NM_001904.3	528	cGt/cAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163320	47163320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	36	333	0	ENST00000409792.3:c.2806C>A	p.Leu936Ile	p.L936I	ENST00000409792	NM_014159.6	936	Ctt/Att																																																																															
SETD2	29072	MSKCC	GRCh37	3	47205386	47205386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	202	467	0	ENST00000409792.3:c.29C>T	p.Pro10Leu	p.P10L	ENST00000409792	NM_014159.6	10	cCg/cTg																																																																															
RHOA	387	MSKCC	GRCh37	3	49412907	49412907	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	83	689	0	ENST00000418115.1:c.116T>C	p.Phe39Ser	p.F39S	ENST00000418115	NM_001664.2	39	tTt/tCt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52661367	52661367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	48	325	1	ENST00000394830.3:c.1463C>T	p.Ala488Val	p.A488V	ENST00000394830	NM_018313.4	488	gCc/gTc																																																																															
ATR	545	MSKCC	GRCh37	3	142272521	142272521	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	66	487	0	ENST00000350721.4:c.2594T>C	p.Leu865Pro	p.L865P	ENST00000350721	NM_001184.3	865	cTg/cCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	63	517	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
BCL6	604	MSKCC	GRCh37	3	187447282	187447284	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	142	711	0	ENST00000232014.4:c.909_911del	p.Glu304del	p.E304del	ENST00000232014	NM_001130845.1	303	gaAGAg/gag																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1920312	1920312	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	178	701	0	ENST00000382891.5:c.1372T>C	p.Ser458Pro	p.S458P	ENST00000382891	NM_133335.3	458	Tcc/Ccc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980559	1980560	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	206	869	0	ENST00000382891.5:c.4027_4028del	p.Pro1343ArgfsTer91	p.P1343Rfs*91	ENST00000382891	NM_133335.3	1341	CCc/c																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197733	66197733	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	57	388	0	ENST00000273854.3:c.2966del	p.Asn989MetfsTer12	p.N989Mfs*12	ENST00000273854	NM_004439.5	989	aAt/at																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467482	66467482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	61	377	0	ENST00000273854.3:c.787G>A	p.Val263Ile	p.V263I	ENST00000273854	NM_004439.5	263	Gtc/Atc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526601	31526601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	113	426	0	ENST00000344624.3:c.439C>T	p.Pro147Ser	p.P147S	ENST00000344624		147	Ccc/Tcc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35857099	35857100	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	26	247	0	ENST00000303115.3:c.24dup	p.Gly9TrpfsTer29	p.G9Wfs*29	ENST00000303115	NM_002185.3	7	act/acTt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	28	214	2	ENST00000303115.3:c.361delA	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873708	35873708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	17	328	0	ENST00000303115.3:c.664C>T	p.Pro222Ser	p.P222S	ENST00000303115	NM_002185.3	222	Cca/Tca																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38964892	38964892	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	17	131	0	ENST00000357387.3:c.1400+2T>C		p.X467_splice	ENST00000357387	NM_152756.3	467																																																																																
PLK2	10769	MSKCC	GRCh37	5	57755537	57755537	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	162	717	0	ENST00000274289.3:c.250C>G	p.Arg84Gly	p.R84G	ENST00000274289	NM_006622.3	84	Cgg/Ggg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	110	441	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	37	336	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	194	336	0	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	66	457	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165354	32165354	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	186	997	0	ENST00000375023.3:c.4774A>G	p.Met1592Val	p.M1592V	ENST00000375023	NM_004557.3	1592	Atg/Gtg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32182015	32182016	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	172	838	1	ENST00000375023.3:c.2037_2038dup	p.Asp680ValfsTer14	p.D680Vfs*14	ENST00000375023	NM_004557.3	680	gac/gTGac																																																																															
SESN1	27244	MSKCC	GRCh37	6	109322667	109322667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	50	416	1	ENST00000436639.2:c.370G>A	p.Ala124Thr	p.A124T	ENST00000436639	NM_014454.2	124	Gca/Aca																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710594	117710594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138412232		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	94	334	0	ENST00000368508.3:c.1678C>T	p.Arg560Cys	p.R560C	ENST00000368508	NM_002944.2	560	Cgc/Tgc																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983227	149983228	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	31	407	0	ENST00000253339.5:c.3030dupT	p.Lys1011Ter	p.K1011*	ENST00000253339		1010	-/T																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	403	763	8	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2977573	2977573	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	369	832	1	ENST00000396946.4:c.1111C>T	p.Gln371Ter	p.Q371*	ENST00000396946	NM_032415.4	371	Cag/Tag																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29207409	29207409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	233	659	0	ENST00000240100.2:c.387G>T	p.Gln129His	p.Q129H	ENST00000240100	NM_001394.6	129	caG/caT																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271528	38271528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	138	899	1	ENST00000425967.3:c.2293C>T	p.Arg765Trp	p.R765W	ENST00000425967	NM_001174067.1	765	Cgg/Tgg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737323	145737323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	312	1129	1	ENST00000428558.2:c.3364G>A	p.Ala1122Thr	p.A1122T	ENST00000428558	NM_004260.3	1122	Gca/Aca																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	167	853	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
ABL1	25	MSKCC	GRCh37	9	133761012	133761012	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	220	891	0	ENST00000318560.5:c.3335A>G	p.Gln1112Arg	p.Q1112R	ENST00000318560	NM_005157.4	1112	cAg/cGg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137321023	137321023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	297	1095	2	ENST00000481739.1:c.980C>T	p.Ala327Val	p.A327V	ENST00000481739	NM_002957.4	327	gCc/gTc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139815530	139815530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	219	931	2	ENST00000247668.2:c.1001C>T	p.Ala334Val	p.A334V	ENST00000247668	NM_021138.3	334	gCg/gTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70346924	70346924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	226	372	0	ENST00000374080.3:c.2791C>T	p.Arg931Trp	p.R931W	ENST00000374080		931	Cgg/Tgg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	208	1048	7	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	43	354	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189926	66189926	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	27	249	0	ENST00000273854.3:c.3020G>T	p.Arg1007Leu	p.R1007L	ENST00000273854	NM_004439.5	1007	cGg/cTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28908218	28908218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	40	416	0	ENST00000282397.4:c.2537C>T	p.Ala846Val	p.A846V	ENST00000282397	NM_002019.4	846	gCa/gTa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290896	15290896	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	79	807	0	ENST00000263388.2:c.3314G>T	p.Gly1105Val	p.G1105V	ENST00000263388	NM_000435.2	1105	gGc/gTc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18961615	18961615	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	78	686	0	ENST00000262803.5:c.748G>T	p.Glu250Ter	p.E250*	ENST00000262803	NM_002911.3	250	Gag/Tag																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271387	26271387	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	33	559	0	ENST00000305910.3:c.226G>C	p.Ala76Pro	p.A76P	ENST00000305910	NM_003534.2	76	Gct/Cct																																																																															
PREX2	80243	MSKCC	GRCh37	8	69005888	69005888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	35	383	0	ENST00000288368.4:c.2299G>A	p.Asp767Asn	p.D767N	ENST00000288368	NM_024870.2	767	Gac/Aac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8524949	8524949	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	36	341	0	ENST00000356435.5:c.655G>C	p.Ala219Pro	p.A219P	ENST00000356435		219	Gct/Cct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	194	353	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CD79B	974	MSKCC	GRCh37	17	62007443	62007443	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	346	600	0	ENST00000392795.3:c.424C>T	p.Arg142Ter	p.R142*	ENST00000392795	NM_001039933.1	142	Cga/Tga																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206653437	206653437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	479	654	2	ENST00000367120.3:c.1321C>T	p.Arg441Trp	p.R441W	ENST00000367120	NM_014002.3	441	Cgg/Tgg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911266	29911266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	50	471	3	ENST00000376809.5:c.565G>A	p.Val189Met	p.V189M	ENST00000376809	NM_002116.7	189	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579401	7579401	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	400	799	0	ENST00000269305.4:c.286del	p.Ser96LeufsTer27	p.S96Lfs*27	ENST00000269305	NM_001126112.2	96	Tct/ct																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135303	30135303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	158	355	0	ENST00000331968.5:c.515G>A	p.Arg172His	p.R172H	ENST00000331968	NM_002742.2	172	cGt/cAt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59857710	59857710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	70	325	0	ENST00000259008.2:c.1847C>T	p.Thr616Ile	p.T616I	ENST00000259008	NM_032043.2	616	aCa/aTa																																																																															
MET	4233	MSKCC	GRCh37	7	116436018	116436018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	291	581	1	ENST00000397752.3:c.4013C>T	p.Ser1338Leu	p.S1338L	ENST00000397752	NM_000245.2	1338	tCa/tTa																																																																															
CBL	867	MSKCC	GRCh37	11	119148875	119148875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0047090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	73	224	0	ENST00000264033.4:c.1096-1G>T		p.X366_splice	ENST00000264033	NM_005188.3	366																																																																																
STAT3	6774	MSKCC	GRCh37	17	40475063	40475063	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	312	683	0	ENST00000264657.5:c.1847A>G	p.Glu616Gly	p.E616G	ENST00000264657	NM_139276.2	616	gAa/gGa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0047090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	96	442	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
PDGFRA	5156	MSKCC	GRCh37	4	55133553	55133553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	102	504	1	ENST00000257290.5:c.857G>A	p.Gly286Glu	p.G286E	ENST00000257290	NM_006206.4	286	gGa/gAa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	365	894	0	ENST00000171111.5:c.959G>C	p.Arg320Pro	p.R320P	ENST00000171111	NM_203500.1	320	cGg/cCg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221293	1221293	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0047090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	384	843	0	ENST00000326873.7:c.816C>G	p.Tyr272Ter	p.Y272*	ENST00000326873	NM_000455.4	272	taC/taG																																																																															
WT1	7490	MSKCC	GRCh37	11	32450100	32450101	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0047090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	341	797	1	ENST00000332351.3:c.711_712del	p.Gln238ValfsTer9	p.Q238Vfs*9	ENST00000332351	NM_024426.4	237	gcGCag/gcag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096367	178096367	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	176	462	0	ENST00000397062.3:c.964C>A	p.Leu322Ile	p.L322I	ENST00000397062	NM_006164.4	322	Cta/Ata																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038815	47038824	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCTACCAG	GCCCTACCAG	-			P-0047090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	149	525	0	ENST00000329236.7:c.595_604del	p.Tyr199ArgfsTer29	p.Y199Rfs*29	ENST00000329236	NM_001204466.1	197	caGCCCTACCAG/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	672	792	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141507	11141507	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	492	764	1	ENST00000344626.4:c.3484G>T	p.Gly1162Cys	p.G1162C	ENST00000344626	NM_003072.3	1162	Ggc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256235	16256236	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	137	540	0	ENST00000375759.3:c.3502_3503del	p.Ser1168LeufsTer10	p.S1168Lfs*10	ENST00000375759	NM_015001.2	1167	cAG/c																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858797	9858797	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	151	227	0	ENST00000330684.3:c.2604C>A	p.Tyr868Ter	p.Y868*	ENST00000330684	NM_001134407.1	868	taC/taA																																																																															
PMS2	5395	MSKCC	GRCh37	7	6038842	6038842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	66	624	0	ENST00000265849.7:c.602G>A	p.Ser201Asn	p.S201N	ENST00000265849	NM_000535.5	201	aGt/aAt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851197	63851197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	670	687	0	ENST00000279873.7:c.1975G>A	p.Asp659Asn	p.D659N	ENST00000279873	NM_032199.2	659	Gac/Aac																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50484185	50484185	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	192	566	0	ENST00000394963.4:c.1035G>T	p.Gln345His	p.Q345H	ENST00000394963	NM_003076.4	345	caG/caT																																																																															
POLE	5426	MSKCC	GRCh37	12	133254239	133254239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	398	542	0	ENST00000320574.5:c.645G>T	p.Leu215Phe	p.L215F	ENST00000320574	NM_006231.2	215	ttG/ttT																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96930986	96930986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	239	583	0	ENST00000258439.3:c.134G>T	p.Cys45Phe	p.C45F	ENST00000258439	NM_001193304.2	45	tGc/tTc																																																																															
EP300	2033	MSKCC	GRCh37	22	41527460	41527460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	208	621	0	ENST00000263253.7:c.1351C>T	p.Pro451Ser	p.P451S	ENST00000263253	NM_001429.3	451	Ccc/Tcc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524723	187524723	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	249	719	0	ENST00000441802.2:c.10957G>T	p.Glu3653Ter	p.E3653*	ENST00000441802	NM_005245.3	3653	Gaa/Taa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891316	101891316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	359	508	1	ENST00000374994.4:c.277G>T	p.Gly93Trp	p.G93W	ENST00000374994	NM_004612.2	93	Ggg/Tgg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934349	39934349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	252	335	0	ENST00000378444.4:c.250G>T	p.Val84Phe	p.V84F	ENST00000378444	NM_001123385.1	84	Gtc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	124	243	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32968840	32968840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	49	164	0	ENST00000380152.3:c.9271G>A	p.Val3091Ile	p.V3091I	ENST00000380152		3091	Gtc/Atc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670641	134670641	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	103	523	2	ENST00000398015.3:c.552G>T	p.Met184Ile	p.M184I	ENST00000398015	NM_004441.4	184	atG/atT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040923	47040923	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	211	309	1	ENST00000329236.7:c.1219G>T	p.Glu407Ter	p.E407*	ENST00000329236	NM_001204466.1	407	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0047105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	116	272	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0047105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	100	376	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115435	115115437	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0047105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	103	420	0	ENST00000257566.3:c.889_891del	p.Asn297del	p.N297del	ENST00000257566	NM_016569.3	297	AAC/-																																																																															
ACVR1	90	MSKCC	GRCh37	2	158636970	158636970	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	113	399	0	ENST00000263640.3:c.210C>A	p.Cys70Ter	p.C70*	ENST00000263640	NM_001105.4	70	tgC/tgA																																																																															
NUF2	83540	MSKCC	GRCh37	1	163315498	163315498	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	55	381	2	ENST00000271452.3:c.838G>T	p.Gly280Ter	p.G280*	ENST00000271452	NM_145697.2	280	Gga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	86	388	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476310	88476310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	77	639	0	ENST00000360948.2:c.1822G>T	p.Gly608Cys	p.G608C	ENST00000360948	NM_001012338.2	608	Ggc/Tgc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892139	9892139	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	112	476	1	ENST00000330684.3:c.2351G>T	p.Gly784Val	p.G784V	ENST00000330684	NM_001134407.1	784	gGt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207009	1207009	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	227	770	0	ENST00000326873.7:c.97G>T	p.Glu33Ter	p.E33*	ENST00000326873	NM_000455.4	33	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602746	10602746	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	356	810	0	ENST00000171111.5:c.832C>G	p.Pro278Ala	p.P278A	ENST00000171111	NM_203500.1	278	Ccg/Gcg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212578332	212578332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	44	372	0	ENST00000342788.4:c.925C>A	p.Pro309Thr	p.P309T	ENST00000342788	NM_005235.2	309	Cct/Act																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715678	30715678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	39	335	0	ENST00000359013.4:c.1411G>A	p.Asp471Asn	p.D471N	ENST00000359013	NM_001024847.2	471	Gat/Aat																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390834	139390835	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0047108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	147	943	3	ENST00000277541.6:c.7356_7357delinsTT	p.Val2453Leu	p.V2453L	ENST00000277541	NM_017617.3	2452	gcGGtg/gcTTtg																																																																															
ATRX	546	MSKCC	GRCh37	X	76813074	76813074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	46	495	0	ENST00000373344.5:c.6547C>G	p.Gln2183Glu	p.Q2183E	ENST00000373344	NM_000489.3	2183	Cag/Gag																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0047118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	129	582	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
POLE	5426	MSKCC	GRCh37	12	133256190	133256190	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	63	578	0	ENST00000320574.5:c.471C>A	p.Phe157Leu	p.F157L	ENST00000320574	NM_006231.2	157	ttC/ttA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	52	428	2	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	11	250	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	15	353	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	20	580	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739030	145739030	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199562131		P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	44	739	0	ENST00000428558.2:c.2125C>T	p.Arg709Trp	p.R709W	ENST00000428558	NM_004260.3	709	Cgg/Tgg																																																																															
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	70	1009	0	ENST00000575354.2:c.3743delC	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851848	134851848	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	38	732	0	ENST00000398015.3:c.1259del	p.Pro420HisfsTer28	p.P420Hfs*28	ENST00000398015	NM_004441.4	418	ttC/tt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686901	37686901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	48	552	2	ENST00000447079.4:c.3810del	p.Gly1271AspfsTer23	p.G1271Dfs*23	ENST00000447079	NM_015083.1	1269	Ccc/cc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	24	446	3	ENST00000447079.4:c.4382delG	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	33	396	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11182145	11182145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	45	780	0	ENST00000361445.4:c.6701C>T	p.Ser2234Leu	p.S2234L	ENST00000361445	NM_004958.3	2234	tCg/tTg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910708	29910708	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	71	1131	0	ENST00000376809.5:c.248A>G	p.Tyr83Cys	p.Y83C	ENST00000376809	NM_002116.7	83	tAt/tGt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619216	1619216	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	52	761	0	ENST00000344749.5:c.1344del	p.Glu449ArgfsTer37	p.E449Rfs*37	ENST00000344749	NM_001136139.2	448	ccC/cc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	77	751	5	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	51	873	4	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803571	1803571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	26	477	1	ENST00000260795.2:c.749C>T	p.Pro250Leu	p.P250L	ENST00000260795		250	cCg/cTg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599271	28599271	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1457528646		P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	53	927	0	ENST00000253063.3:c.722del	p.Pro241GlnfsTer6	p.P241Qfs*6	ENST00000253063	NM_031459.4	239	agC/ag																																																																															
CENPA	1058	MSKCC	GRCh37	2	27015025	27015025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	30	434	0	ENST00000335756.4:c.127C>T	p.Arg43Trp	p.R43W	ENST00000335756	NM_001809.3	43	Cgg/Tgg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129351	64129351	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	61	983	2	ENST00000334205.4:c.788del	p.Pro263LeufsTer112	p.P263Lfs*112	ENST00000334205	NM_003942.2	261	ttC/tt																																																																															
TET2	54790	MSKCC	GRCh37	4	106197435	106197435	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	30	338	0	ENST00000380013.4:c.5772del	p.Ala1925ProfsTer25	p.A1925Pfs*25	ENST00000380013	NM_001127208.2	1923	gAa/ga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55214313	55214313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	49	681	0	ENST00000275493.2:c.439G>A	p.Ala147Thr	p.A147T	ENST00000275493	NM_005228.3	147	Gcc/Acc																																																																															
SMO	6608	MSKCC	GRCh37	7	128846014	128846014	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	39	647	0	ENST00000249373.3:c.944T>C	p.Val315Ala	p.V315A	ENST00000249373	NM_005631.4	315	gTc/gCc																																																																															
ATM	472	MSKCC	GRCh37	11	108183191	108183191	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	16	249	0	ENST00000278616.4:c.5977del	p.Ser1993ValfsTer7	p.S1993Vfs*7	ENST00000278616	NM_000051.3	1991	gAa/ga																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434905	110434905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	44	688	1	ENST00000375856.3:c.3496G>A	p.Ala1166Thr	p.A1166T	ENST00000375856	NM_003749.2	1166	Gcc/Acc																																																																															
TERT	7015	MSKCC	GRCh37	5	1278755	1278755	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	42	721	1	ENST00000310581.5:c.2286+1G>A		p.X762_splice	ENST00000310581	NM_198253.2	762																																																																																
MTOR	2475	MSKCC	GRCh37	1	11187202	11187202	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	23	544	0	ENST00000361445.4:c.6217-1G>T		p.X2073_splice	ENST00000361445	NM_004958.3	2073																																																																																
IKBKE	9641	MSKCC	GRCh37	1	206652414	206652414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	43	779	3	ENST00000367120.3:c.1121C>T	p.Thr374Met	p.T374M	ENST00000367120	NM_014002.3	374	aCg/aTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118360585	118360587	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	23	441	0	ENST00000534358.1:c.4566_4568del	p.Lys1523del	p.K1523del	ENST00000534358	NM_005933.3	1520	AAG/-																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78896548	78896548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	57	826	2	ENST00000306801.3:c.2545C>T	p.Arg849Cys	p.R849C	ENST00000306801	NM_020761.2	849	Cgc/Tgc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11100034	11100034	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	49	755	0	ENST00000344626.4:c.1160A>G	p.Asn387Ser	p.N387S	ENST00000344626	NM_003072.3	387	aAc/aGc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279585	18279585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	48	820	0	ENST00000222254.8:c.1858C>T	p.Arg620Cys	p.R620C	ENST00000222254	NM_005027.3	620	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213366	36213366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	54	978	1	ENST00000222270.7:c.2563C>T	p.Arg855Trp	p.R855W	ENST00000222270	NM_014727.1	855	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223619	36223619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	68	1079	2	ENST00000222270.7:c.6169C>T	p.Arg2057Cys	p.R2057C	ENST00000222270	NM_014727.1	2057	Cgc/Tgc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663357	227663357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	63	663	0	ENST00000305123.5:c.98G>A	p.Arg33His	p.R33H	ENST00000305123	NM_005544.2	33	cGc/cAc																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945676	54945677	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	20	373	0	ENST00000312783.6:c.893dup	p.Glu299Ter	p.E299*	ENST00000312783	NM_198436.1	298	cct/ccCt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532542	187532543	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	15	306	0	ENST00000441802.2:c.9850dup	p.Thr3284AsnfsTer8	p.T3284Nfs*8	ENST00000441802	NM_005245.3	3284	aca/aAca																																																																															
APC	324	MSKCC	GRCh37	5	112116551	112116551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748193367		P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	15	376	1	ENST00000257430.4:c.596C>T	p.Ala199Val	p.A199V	ENST00000257430	NM_000038.5	199	gCg/gTg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517531	176517531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	47	1000	1	ENST00000292408.4:c.232C>T	p.Arg78Cys	p.R78C	ENST00000292408	NM_213647.1	78	Cgt/Tgt																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805885	32805885	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	50	944	0	ENST00000374899.4:c.126del	p.Thr43ProfsTer11	p.T43Pfs*11	ENST00000374899	NM_018833.2	42	ggG/gg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737596	145737596	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	49	1017	0	ENST00000428558.2:c.3167A>G	p.Tyr1056Cys	p.Y1056C	ENST00000428558	NM_004260.3	1056	tAt/tGt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041199	47041199	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	24	447	0	ENST00000329236.7:c.1393A>G	p.Thr465Ala	p.T465A	ENST00000329236	NM_001204466.1	465	Acc/Gcc																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0047123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	194	374	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	290	663	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																															
PALB2	79728	MSKCC	GRCh37	16	23637631	23637631	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45476495		P-0047123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	263	571	1	ENST00000261584.4:c.2674G>A	p.Glu892Lys	p.E892K	ENST00000261584	NM_024675.3	892	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578189	7578190	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0047123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	344	656	0	ENST00000269305.4:c.659dup	p.Tyr220Ter	p.Y220*	ENST00000269305	NM_001126112.2	220	tat/taAt																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46588099	46588100	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0047123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	255	719	0	ENST00000263734.3:c.651_652del	p.Leu218AlafsTer9	p.L218Afs*9	ENST00000263734	NM_001430.4	217	CCc/c																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192550	138192550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	99	398	0	ENST00000237289.4:c.186G>T	p.Glu62Asp	p.E62D	ENST00000237289	NM_001270507.1	62	gaG/gaT																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519922		P-0047124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	26	578	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0047124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	47	803	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760817	59760817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	66	496	2	ENST00000259008.2:c.3590G>T	p.Gly1197Val	p.G1197V	ENST00000259008	NM_032043.2	1197	gGa/gTa																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430296	181430296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	33	377	0	ENST00000325404.1:c.148G>T	p.Val50Leu	p.V50L	ENST00000325404	NM_003106.3	50	Gtg/Ttg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858349	9858349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	83	434	3	ENST00000330684.3:c.3052G>A	p.Val1018Met	p.V1018M	ENST00000330684	NM_001134407.1	1018	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0047100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	341	665	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0047100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	46	176	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268156	153268156	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	195	332	0	ENST00000281708.4:c.652C>T	p.Gln218Ter	p.Q218*	ENST00000281708	NM_033632.3	218	Caa/Taa																																																																															
INSR	3643	MSKCC	GRCh37	19	7117083	7117083	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs52826008		P-0047100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	193	422	0	ENST00000302850.5:c.4133G>A	p.Arg1378Gln	p.R1378Q	ENST00000302850	NM_000208.2	1378	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112173665	112173665	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0047100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	73	242	0	ENST00000257430.4:c.2374A>T	p.Lys792Ter	p.K792*	ENST00000257430	NM_000038.5	792	Aag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0047106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	31	460	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043769-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			246	170	458	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0043769-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			544	557	976	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045684	26045684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043769-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			393	100	365	0	ENST00000540144.1:c.46G>A	p.Ala16Thr	p.A16T	ENST00000540144	NM_003531.2	16	Gct/Act																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730140	41730140	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043769-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			434	238	400	0	ENST00000242208.4:c.389G>A	p.Gly130Glu	p.G130E	ENST00000242208	NM_002192.2	130	gGa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112175429	112175430	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043769-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			246	158	342	0	ENST00000257430.4:c.4142dup	p.Leu1382ThrfsTer4	p.L1382Tfs*4	ENST00000257430	NM_000038.5	1380	acc/aCcc																																																																															
APC	324	MSKCC	GRCh37	5	112174424	112174424	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043769-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			199	32	180	0	ENST00000257430.4:c.3133C>T	p.Gln1045Ter	p.Q1045*	ENST00000257430	NM_000038.5	1045	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119914	70119915	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043769-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			672	153	783	0	ENST00000245479.2:c.917dup	p.Pro307AlafsTer271	p.P307Afs*271	ENST00000245479	NM_000346.3	306	gtg/gTtg																																																																															
SYK	6850	MSKCC	GRCh37	9	93606293	93606294	+	missense_variant	Missense_Mutation	DNP	TT	TT	AA			P-0043769-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1436	248	1087	1	ENST00000375746.1:c.113_114inv	p.Leu38Gln	p.L38Q	ENST00000375746	NM_001174167.1	38	cTT/cAA																																																																															
ARAF	369	MSKCC	GRCh37	X	47429353	47429353	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043769-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1187	180	1095	0	ENST00000377045.4:c.1482del	p.Tyr495ThrfsTer9	p.Y495Tfs*9	ENST00000377045	NM_001654.4	494	gCc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	19	323	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0046674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	30	400	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683697	162683697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	36	477	1	ENST00000366898.1:c.272C>T	p.Ala91Val	p.A91V	ENST00000366898	NM_004562.2	91	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	45	645	0	ENST00000269305.4:c.658T>A	p.Tyr220Asn	p.Y220N	ENST00000269305	NM_001126112.2	220	Tat/Aat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971167	21971167	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	31	400	0	ENST00000304494.5:c.191T>C	p.Leu64Pro	p.L64P	ENST00000304494	NM_000077.4	64	cTg/cCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	42	373	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0046955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	55	683	0	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853077	151853077	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	47	388	0	ENST00000262189.6:c.11878C>T	p.Arg3960Ter	p.R3960*	ENST00000262189	NM_170606.2	3960	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593484	48593484	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	54	291	0	ENST00000342988.3:c.1235del	p.Tyr412SerfsTer3	p.Y412Sfs*3	ENST00000342988	NM_005359.5	412	tAc/tc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123227915	123227915	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	34	372	0	ENST00000218089.9:c.3626A>T	p.Glu1209Val	p.E1209V	ENST00000218089	NM_001042749.1	1209	gAa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	43	349	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0046971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	73	682	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0046971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1188	52	759	2	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	101	539	2	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																															
MITF	4286	MSKCC	GRCh37	3	69928512	69928512	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1269	81	757	0	ENST00000352241.4:c.332A>G	p.Gln111Arg	p.Q111R	ENST00000352241	NM_198159.2	111	cAg/cGg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195760	102195760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	61	291	0	ENST00000263464.3:c.520C>T	p.Leu174Phe	p.L174F	ENST00000263464	NM_001165.4	174	Ctt/Ttt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220578	1220578	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0046868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	191	761	0	ENST00000326873.7:c.598-2A>C		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																																
SPRED1	161742	MSKCC	GRCh37	15	38591588	38591588	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	52	389	0	ENST00000299084.4:c.47G>T	p.Arg16Leu	p.R16L	ENST00000299084	NM_152594.2	16	cGa/cTa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610359	10610360	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0046868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	218	819	0	ENST00000171111.5:c.350_351delinsTT	p.Glu117Val	p.E117V	ENST00000171111	NM_203500.1	117	gAG/gTT																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1961237	1961237	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	62	413	0	ENST00000382891.5:c.3025G>T	p.Asp1009Tyr	p.D1009Y	ENST00000382891	NM_133335.3	1009	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	372	392	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	518	689	6	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112174379	112174379	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0046882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	78	215	0	ENST00000257430.4:c.3088A>T	p.Lys1030Ter	p.K1030*	ENST00000257430	NM_000038.5	1030	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	113	298	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740417	58740417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	159	470	0	ENST00000305921.3:c.1322G>A	p.Arg441His	p.R441H	ENST00000305921	NM_003620.3	441	cGt/cAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653847	89653893	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATATTGATGATGTAGTAAGGTAAGAATGCTTTGATTTTCTATTTCA	AATATTGATGATGTAGTAAGGTAAGAATGCTTTGATTTTCTATTTCA	-			P-0046882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	56	337	0	ENST00000371953.3:c.155_164+37del		p.X52_splice	ENST00000371953	NM_000314.4	52																																																																																
BRCA1	672	MSKCC	GRCh37	17	41243983	41244069	+	inframe_deletion	In_Frame_Del	DEL	TCCTGCTAAGCTCTCCTTTCTGGACGCTTTTGCTAAAAACAGCAGAACTTTCCTTAATGTCATTTTCAGCAAAACTAGTATCTTCCT	TCCTGCTAAGCTCTCCTTTCTGGACGCTTTTGCTAAAAACAGCAGAACTTTCCTTAATGTCATTTTCAGCAAAACTAGTATCTTCCT	-			P-0046882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	212	561	0	ENST00000357654.3:c.3479_3565del	p.Lys1160_Arg1188del	p.K1160_R1188del	ENST00000357654	NM_007294.3	1160	aAGGAAGATACTAGTTTTGCTGAAAATGACATTAAGGAAAGTTCTGCTGTTTTTAGCAAAAGCGTCCAGAAAGGAGAGCTTAGCAGGAgt/agt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761461	59761461	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	134	370	0	ENST00000259008.2:c.2946A>T	p.Lys982Asn	p.K982N	ENST00000259008	NM_032043.2	982	aaA/aaT																																																																															
APC	324	MSKCC	GRCh37	5	112174369	112174369	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	79	218	1	ENST00000257430.4:c.3078T>G	p.Asn1026Lys	p.N1026K	ENST00000257430	NM_000038.5	1026	aaT/aaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0046892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	88	586	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212589875	212589875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	56	384	2	ENST00000342788.4:c.667G>A	p.Gly223Arg	p.G223R	ENST00000342788	NM_005235.2	223	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112116558	112116558	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	32	250	0	ENST00000257430.4:c.603A>T	p.Glu201Asp	p.E201D	ENST00000257430	NM_000038.5	201	gaA/gaT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0046893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	62	510	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652129	36652129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34916193		P-0046893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	59	723	1	ENST00000244741.5:c.251G>A	p.Arg84Gln	p.R84Q	ENST00000244741	NM_000389.4	84	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0046893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	51	660	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189412	56189412	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	62	396	0	ENST00000399503.3:c.4444C>T	p.Arg1482Ter	p.R1482*	ENST00000399503	NM_005921.1	1482	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057781	27057781	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	69	562	0	ENST00000324856.7:c.1489C>T	p.Gln497Ter	p.Q497*	ENST00000324856	NM_006015.4	497	Caa/Taa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217783	2217783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	52	986	1	ENST00000398665.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000398665	NM_032482.2	853	Cgc/Tgc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435168	56435168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	86	720	1	ENST00000407977.2:c.1969C>T	p.Arg657Trp	p.R657W	ENST00000407977		657	Cgg/Tgg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37045935	37045935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	56	326	0	ENST00000231790.2:c.350C>T	p.Thr117Met	p.T117M	ENST00000231790	NM_000249.3	117	aCg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427369	49427369	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	76	928	0	ENST00000301067.7:c.11119C>T	p.Arg3707Ter	p.R3707*	ENST00000301067	NM_003482.3	3707	Cga/Tga																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856056	111856056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	80	995	0	ENST00000341259.2:c.107C>T	p.Ala36Val	p.A36V	ENST00000341259	NM_005475.2	36	gCg/gTg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745533	162745533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	37	355	0	ENST00000367921.3:c.1948C>T	p.Leu650Phe	p.L650F	ENST00000367921	NM_006182.2	650	Ctc/Ttc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123176470	123176470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	39	243	1	ENST00000218089.9:c.437G>T	p.Arg146Leu	p.R146L	ENST00000218089	NM_001042749.1	146	cGa/cTa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103528015	103528015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	27	268	0	ENST00000355739.4:c.3323C>T	p.Ser1108Leu	p.S1108L	ENST00000355739	NM_000123.3	1108	tCa/tTa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961358	15961358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	51	406	0	ENST00000268712.3:c.6031G>A	p.Glu2011Lys	p.E2011K	ENST00000268712	NM_006311.3	2011	Gaa/Aaa																																																																															
AKT2	208	MSKCC	GRCh37	19	40748563	40748563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	81	895	0	ENST00000392038.2:c.319G>A	p.Ala107Thr	p.A107T	ENST00000392038	NM_001626.4	107	Gcc/Acc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605150	46605150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	51	569	0	ENST00000263734.3:c.1367C>T	p.Ala456Val	p.A456V	ENST00000263734	NM_001430.4	456	gCc/gTc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31016213	31016213	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	37	249	0	ENST00000375687.4:c.459A>T	p.Arg153Ser	p.R153S	ENST00000375687	NM_015338.5	153	agA/agT																																																																															
SRC	6714	MSKCC	GRCh37	20	36030845	36030845	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	39	380	0	ENST00000358208.4:c.1124C>G	p.Ser375Ter	p.S375*	ENST00000358208		375	tCa/tGa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442576	52442576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	46	329	0	ENST00000460680.1:c.169C>T	p.Arg57Trp	p.R57W	ENST00000460680	NM_004656.3	57	Cgg/Tgg																																																																															
KDR	3791	MSKCC	GRCh37	4	55955545	55955545	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	34	324	0	ENST00000263923.4:c.3400G>C	p.Glu1134Gln	p.E1134Q	ENST00000263923	NM_002253.2	1134	Gaa/Caa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56170974	56170975	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGCACTG			P-0046893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	33	318	0	ENST00000399503.3:c.1805_1812dup	p.Asn605AlafsTer54	p.N605Afs*54	ENST00000399503	NM_005921.1	601	gag/gaGAGCACTGg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150022979	150022979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	64	381	0	ENST00000253339.5:c.284C>T	p.Ser95Phe	p.S95F	ENST00000253339		95	tCt/tTt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2977593	2977593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	90	618	0	ENST00000396946.4:c.1091G>A	p.Arg364His	p.R364H	ENST00000396946	NM_032415.4	364	cGc/cAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485828	8485828	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	24	296	0	ENST00000356435.5:c.2989C>G	p.His997Asp	p.H997D	ENST00000356435		997	Cat/Gat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	20	349	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	111	574	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665213	138665213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	71	668	0	ENST00000330315.3:c.352G>A	p.Glu118Lys	p.E118K	ENST00000330315	NM_023067.3	118	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	83	274	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	146	720	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
ETV6	2120	MSKCC	GRCh37	12	12043942	12043942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	51	282	0	ENST00000396373.4:c.1321G>A	p.Glu441Lys	p.E441K	ENST00000396373	NM_001987.4	441	Gag/Aag																																																																															
LATS1	9113	MSKCC	GRCh37	6	149982897	149982897	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	25	321	0	ENST00000253339.5:c.3361G>C	p.Glu1121Gln	p.E1121Q	ENST00000253339		1121	Gag/Cag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46205217	46205217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	46	304	0	ENST00000334344.6:c.301G>A	p.Glu101Lys	p.E101K	ENST00000334344	NM_152641.2	101	Gag/Aag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696716	47696716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	98	366	0	ENST00000347630.2:c.232G>A	p.Glu78Lys	p.E78K	ENST00000347630	NM_001007230.1	78	Gaa/Aaa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458150	120458150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	149	562	0	ENST00000256646.2:c.7195G>A	p.Glu2399Lys	p.E2399K	ENST00000256646	NM_024408.3	2399	Gag/Aag																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24129414	24129414	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	48	434	0	ENST00000263121.7:c.58G>C	p.Glu20Gln	p.E20Q	ENST00000263121	NM_003073.3	20	Gag/Cag																																																																															
TET1	80312	MSKCC	GRCh37	10	70332684	70332684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	45	438	1	ENST00000373644.4:c.589G>A	p.Glu197Lys	p.E197K	ENST00000373644	NM_030625.2	197	Gag/Aag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344374	118344374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	23	254	1	ENST00000534358.1:c.2500C>T	p.Pro834Ser	p.P834S	ENST00000534358	NM_005933.3	834	Cct/Tct																																																																															
ETV6	2120	MSKCC	GRCh37	12	11992130	11992130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	110	405	0	ENST00000396373.4:c.220G>A	p.Glu74Lys	p.E74K	ENST00000396373	NM_001987.4	74	Gaa/Aaa																																																																															
POLE	5426	MSKCC	GRCh37	12	133215731	133215731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	91	423	0	ENST00000320574.5:c.5532G>A	p.Met1844Ile	p.M1844I	ENST00000320574	NM_006231.2	1844	atG/atA																																																																															
GNA11	2767	MSKCC	GRCh37	19	3094725	3094725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	55	665	0	ENST00000078429.4:c.76G>A	p.Glu26Lys	p.E26K	ENST00000078429	NM_002067.2	26	Gag/Aag																																																																															
CARM1	10498	MSKCC	GRCh37	19	11022931	11022931	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	129	574	0	ENST00000327064.4:c.630C>G	p.Ile210Met	p.I210M	ENST00000327064	NM_199141.1	210	atC/atG																																																																															
BARD1	580	MSKCC	GRCh37	2	215609878	215609878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	21	269	1	ENST00000260947.4:c.1816C>T	p.His606Tyr	p.H606Y	ENST00000260947	NM_000465.2	606	Cat/Tat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147508	47147508	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	28	364	0	ENST00000409792.3:c.4818C>G	p.Phe1606Leu	p.F1606L	ENST00000409792	NM_014159.6	1606	ttC/ttG																																																																															
APC	324	MSKCC	GRCh37	5	112162840	112162840	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	83	316	0	ENST00000257430.4:c.1444G>C	p.Asp482His	p.D482H	ENST00000257430	NM_000038.5	482	Gac/Cac																																																																															
RAD50	10111	MSKCC	GRCh37	5	131973797	131973797	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	57	253	0	ENST00000265335.6:c.3500C>G	p.Ser1167Cys	p.S1167C	ENST00000265335		1167	tCt/tGt																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271321	26271321	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	83	614	0	ENST00000305910.3:c.292G>C	p.Glu98Gln	p.E98Q	ENST00000305910	NM_003534.2	98	Gag/Cag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672323	30672323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	63	511	1	ENST00000376406.3:c.4637C>T	p.Pro1546Leu	p.P1546L	ENST00000376406	NM_014641.2	1546	cCt/cTt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672515	30672515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	73	503	0	ENST00000376406.3:c.4445C>T	p.Ser1482Phe	p.S1482F	ENST00000376406	NM_014641.2	1482	tCt/tTt																																																																															
EZH2	2146	MSKCC	GRCh37	7	148525952	148525952	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	83	277	0	ENST00000320356.2:c.505G>T	p.Glu169Ter	p.E169*	ENST00000320356	NM_004456.4	169	Gaa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845410	151845410	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	57	526	0	ENST00000262189.6:c.13602G>C	p.Gln4534His	p.Q4534H	ENST00000262189	NM_170606.2	4534	caG/caC																																																																															
FANCC	2176	MSKCC	GRCh37	9	97869420	97869420	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	104	601	0	ENST00000289081.3:c.1461C>G	p.Ile487Met	p.I487M	ENST00000289081	NM_000136.2	487	atC/atG																																																																															
POLE	5426	MSKCC	GRCh37	12	133241937	133241937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	55	701	0	ENST00000320574.5:c.2419G>T	p.Ala807Ser	p.A807S	ENST00000320574	NM_006231.2	807	Gcc/Tcc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0046910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	177	632	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0046910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	216	606	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	145	422	0	ENST00000349496.5:c.1982G>A	p.Arg661Gln	p.R661Q	ENST00000349496	NM_001904.3	661	cGa/cAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	94	594	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120258	70120259	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	228	947	0	ENST00000245479.2:c.1261dupA	p.Ser421LysfsTer157	p.S421Kfs*157	ENST00000245479	NM_000346.3	420	-/A																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	64	363	0	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174458	11174458	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	112	750	1	ENST00000361445.4:c.7217T>A	p.Val2406Glu	p.V2406E	ENST00000361445	NM_004958.3	2406	gTg/gAg																																																																															
SDHB	6390	MSKCC	GRCh37	1	17349143	17349143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	94	708	0	ENST00000375499.3:c.725G>A	p.Arg242His	p.R242H	ENST00000375499	NM_003000.2	242	cGc/cAc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31511186	31511186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	121	830	0	ENST00000344624.3:c.1388G>A	p.Arg463Gln	p.R463Q	ENST00000344624		463	cGg/cAg																																																																															
SDHC	6391	MSKCC	GRCh37	1	161298256	161298256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	79	481	0	ENST00000367975.2:c.148C>T	p.Arg50Cys	p.R50C	ENST00000367975	NM_003001.3	50	Cgt/Tgt																																																																															
NUP93	9688	MSKCC	GRCh37	16	56857706	56857706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	85	580	0	ENST00000308159.5:c.742G>A	p.Val248Met	p.V248M	ENST00000308159	NM_014669.4	248	Gtg/Atg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120418	70120437	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCCCATGTACACCCCCAT	CGCCCCATGTACACCCCCAT	-			P-0046910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	411	1073	0	ENST00000245479.2:c.1424_1443del	p.Pro475ArgfsTer96	p.P475Rfs*96	ENST00000245479	NM_000346.3	474	CGCCCCATGTACACCCCCATc/c																																																																															
APC	324	MSKCC	GRCh37	5	112175153	112175153	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	14	197	0	ENST00000257430.4:c.3862G>T	p.Gly1288Ter	p.G1288*	ENST00000257430	NM_000038.5	1288	Gga/Tga																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275239	41275239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	125	371	1	ENST00000349496.5:c.1405C>T	p.Arg469Cys	p.R469C	ENST00000349496	NM_001904.3	469	Cgt/Tgt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118352517	118352517	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs142658261		P-0046913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	142	512	0	ENST00000534358.1:c.3722G>C	p.Ser1241Thr	p.S1241T	ENST00000534358	NM_005933.3	1241	aGt/aCt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118712	115118715	+	frameshift_variant	Frame_Shift_Del	DEL	GTGA	GTGA	-			P-0046913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	137	534	0	ENST00000257566.3:c.626_629del	p.Leu209ProfsTer33	p.L209Pfs*33	ENST00000257566	NM_016569.3	209	cTCACc/cc																																																																															
CDH1	999	MSKCC	GRCh37	16	68842653	68842654	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	154	620	0	ENST00000261769.5:c.590dup	p.Asp198Ter	p.D198*	ENST00000261769	NM_004360.3	197	gct/gCct																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348898	89348898	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	137	1068	2	ENST00000301030.4:c.4052G>T	p.Arg1351Ile	p.R1351I	ENST00000301030	NM_001256183.1	1351	aGa/aTa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351104	89351104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	111	809	0	ENST00000301030.4:c.1846G>A	p.Glu616Lys	p.E616K	ENST00000301030	NM_001256183.1	616	Gag/Aag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16040659	16040659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	78	283	0	ENST00000268712.3:c.1475G>A	p.Arg492Lys	p.R492K	ENST00000268712	NM_006311.3	492	aGa/aAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29559113	29559113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	52	131	0	ENST00000358273.4:c.3220G>A	p.Glu1074Lys	p.E1074K	ENST00000358273	NM_001042492.2	1074	Gaa/Aaa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880257	37880257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	136	561	0	ENST00000269571.5:c.2301C>G	p.Ile767Met	p.I767M	ENST00000269571		767	atC/atG																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37884046	37884046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	222	1182	1	ENST00000269571.5:c.3517C>T	p.Leu1173Phe	p.L1173F	ENST00000269571		1173	Ctc/Ttc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246128	41246128	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	73	527	0	ENST00000357654.3:c.1420T>G	p.Leu474Val	p.L474V	ENST00000357654	NM_007294.3	474	Tta/Gta																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804258	46804258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	199	1084	0	ENST00000290295.7:c.749C>T	p.Ser250Leu	p.S250L	ENST00000290295	NM_006361.5	250	tCg/tTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	79	362	0	ENST00000342988.3:c.988G>C	p.Glu330Gln	p.E330Q	ENST00000342988	NM_005359.5	330	Gaa/Caa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0046913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	10	353	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543871	212543871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	125	459	0	ENST00000342788.4:c.1528G>A	p.Asp510Asn	p.D510N	ENST00000342788	NM_005235.2	510	Gat/Aat																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793425	242793425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	156	1025	0	ENST00000334409.5:c.652G>A	p.Val218Met	p.V218M	ENST00000334409	NM_005018.2	218	Gtg/Atg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0046913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	132	161	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66468016	66468016	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	54	152	0	ENST00000273854.3:c.253G>C	p.Glu85Gln	p.E85Q	ENST00000273854	NM_004439.5	85	Gag/Cag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178130	56178130	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	107	315	0	ENST00000399503.3:c.3103G>C	p.Glu1035Gln	p.E1035Q	ENST00000399503	NM_005921.1	1035	Gaa/Caa																																																																															
IRF4	3662	MSKCC	GRCh37	6	397138	397138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	109	517	0	ENST00000380956.4:c.523G>A	p.Asp175Asn	p.D175N	ENST00000380956	NM_001195286.1	175	Gac/Aac																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839802	27839802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	162	901	0	ENST00000328488.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000328488	NM_003533.2	98	Gag/Aag																																																																															
DAXX	1616	MSKCC	GRCh37	6	33286913	33286913	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	160	772	0	ENST00000374542.5:c.2024C>A	p.Ser675Tyr	p.S675Y	ENST00000374542	NM_001141970.1	675	tCc/tAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55266423	55266423	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	138	577	0	ENST00000275493.2:c.2715G>A	p.Trp905Ter	p.W905*	ENST00000275493	NM_005228.3	905	tgG/tgA																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0046923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	85	334	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
STK11	6794	MSKCC	GRCh37	19	1219341	1219341	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	121	835	0	ENST00000326873.7:c.393C>G	p.Tyr131Ter	p.Y131*	ENST00000326873	NM_000455.4	131	taC/taG																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	33	306	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	56	705	0	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220382	1220382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	75	592	0	ENST00000326873.7:c.475C>T	p.Gln159Ter	p.Q159*	ENST00000326873	NM_000455.4	159	Cag/Tag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341269	8341269	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	19	209	0	ENST00000356435.5:c.4948-1G>A		p.X1650_splice	ENST00000356435		1650																																																																																
MSI1	4440	MSKCC	GRCh37	12	120794763	120794763	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	76	758	1	ENST00000257552.2:c.594del	p.Arg199GlyfsTer50	p.R199Gfs*50	ENST00000257552	NM_002442.3	198	ggG/gg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21643285	21643285	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	51	402	0	ENST00000421138.2:c.242A>G	p.Asp81Gly	p.D81G	ENST00000421138		81	gAt/gGt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748405	162748406	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	33	330	0	ENST00000367921.3:c.2323dup	p.Val775GlyfsTer21	p.V775Gfs*21	ENST00000367921	NM_006182.2	773	-/G																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591957	48591957	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	29	286	0	ENST00000342988.3:c.1120G>T	p.Glu374Ter	p.E374*	ENST00000342988	NM_005359.5	374	Gaa/Taa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276675	15276675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	82	635	1	ENST00000263388.2:c.5590G>T	p.Asp1864Tyr	p.D1864Y	ENST00000263388	NM_000435.2	1864	Gac/Tac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549352	187549352	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	64	567	0	ENST00000441802.2:c.4766A>G	p.Lys1589Arg	p.K1589R	ENST00000441802	NM_005245.3	1589	aAg/aGg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853080	151853080	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	31	343	0	ENST00000262189.6:c.11875G>C	p.Ala3959Pro	p.A3959P	ENST00000262189	NM_170606.2	3959	Gcc/Ccc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971157	21971157	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	30	418	0	ENST00000304494.5:c.201del	p.Ala68ArgfsTer78	p.A68Rfs*78	ENST00000304494	NM_000077.4	67	ggC/gg																																																																															
SYK	6850	MSKCC	GRCh37	9	93606582	93606582	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	52	451	0	ENST00000375746.1:c.402G>T	p.Gln134His	p.Q134H	ENST00000375746	NM_001174167.1	134	caG/caT																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209393	98209393	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	65	561	0	ENST00000331920.6:c.4145A>G	p.His1382Arg	p.H1382R	ENST00000331920	NM_000264.3	1382	cAc/cGc																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20152095	20152095	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	40	267	0	ENST00000379607.5:c.235del	p.Val79LeufsTer13	p.V79Lfs*13	ENST00000379607	NM_001412.3	79	Gtt/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044707-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			299	122	367	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578232	7578232	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0044707-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			415	246	585	3	ENST00000269305.4:c.617T>A	p.Leu206Ter	p.L206*	ENST00000269305	NM_001126112.2	206	tTg/tAg																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271393	26271393	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044707-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			425	283	594	1	ENST00000305910.3:c.220G>T	p.Glu74Ter	p.E74*	ENST00000305910	NM_003534.2	74	Gaa/Taa																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986989	36986990	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	AA			P-0044707-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			323	678	484	1	ENST00000354822.5:c.699_700delinsTT	p.Gln234Ter	p.Q234*	ENST00000354822	NM_001079668.2	233	acGCag/acTTag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692803	89692803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	36	169	0	ENST00000371953.3:c.287C>T	p.Pro96Leu	p.P96L	ENST00000371953	NM_000314.4	96	cCa/cTa																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675207	40675207	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	83	438	0	ENST00000249776.8:c.171G>C	p.Glu57Asp	p.E57D	ENST00000249776	NM_033286.3	57	gaG/gaC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906525	32906525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	31	215	0	ENST00000380152.3:c.910G>T	p.Glu304Ter	p.E304*	ENST00000380152		304	Gaa/Taa																																																																															
RB1	5925	MSKCC	GRCh37	13	49027127	49027127	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0046865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	19	192	0	ENST00000267163.4:c.1696-2A>G		p.X566_splice	ENST00000267163	NM_000321.2	566																																																																																
NSD1	64324	MSKCC	GRCh37	5	176637417	176637417	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	43	298	0	ENST00000439151.2:c.2017G>C	p.Glu673Gln	p.E673Q	ENST00000439151	NM_022455.4	673	Gag/Cag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176722273	176722273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	214	380	0	ENST00000439151.2:c.7904G>A	p.Gly2635Glu	p.G2635E	ENST00000439151	NM_022455.4	2635	gGg/gAg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056105	26057016	+	coding_sequence_variant,5_prime_UTR_variant	In_Frame_Del	DEL	TTTCTTGGGCTTCGCAACCTTGGCCTTCTTTGGGCTCTTAGCCACTTTCTTGGTTACAGTGGCCGCGGCCGGCTTCTTCGCTTTCTTCGGTGTTTTCTTAGCGCTCTTCTTCGGAGTTGCGCCGCCAGCCGCCTTCTTGGGCTTCTTGGCTGCCCCAACTGGCTTCTTAGGTTTGGTTCCGCCCGCCTTTTTAACCTTGGGCTTGGCTTCCCCGGAGGCTGCCTTCTTGTTGAGTTTAAAGGAGCCAGAAGCACCGGTGCCTTTCGTTTGCACCAGAGTGCCCTTGCTCACCAGGCTCTTGAGACCAAGTTTGATACGGCTGTTGTTTTTCTCCACATCATAGCCGGCGGCAGCCAACGCTTTTTTCAGAGCAGCCAGAGAAACTCCGCTACGCTCTTTAGAGGCGGCCACAGCCTTGGTGATGAGCTCTGACACCGGGGGACCAGACGCCTTACGAGGCGTACCCCCAGCCTTTTTGGCCGCCTTCTTCTTTACAGGGGCCTTCTCCGCAGGAGGCGCGGCAGCGGGAGCGGCAGGAGCAGTCTCGGACATGTTGAGAATCAAAAACTCGGGTACAAGTGGCAAAGCGCCGATGAAGCAGCGCCTGGGCAGGGCCGCTGTATATATAGAGCGCAGGCGCGCTCTGATTGGTGCTCTGGTCGCCCGCCTGGCTGGCAGGCTCTGAGCCGCTGCGCTGCTCCCAAGTTGTGTTTGTTCCACCTCACAAAAGGGGAAAAATATTAAAATTCCCCGCACCAAATCACTTGGGTTTGGTCAGGAAAGGATCTCAGAAGCCTCGGGCTTCATGCTCTTCATTTATTTTTTCCACAAACACAAAAACAACGCGTCCAGGCGTCCCCAATTCCCCCAACTCCGAAGGAAGTCTGGGGCAGTCAGAGACCACTTTCTGTT	TTTCTTGGGCTTCGCAACCTTGGCCTTCTTTGGGCTCTTAGCCACTTTCTTGGTTACAGTGGCCGCGGCCGGCTTCTTCGCTTTCTTCGGTGTTTTCTTAGCGCTCTTCTTCGGAGTTGCGCCGCCAGCCGCCTTCTTGGGCTTCTTGGCTGCCCCAACTGGCTTCTTAGGTTTGGTTCCGCCCGCCTTTTTAACCTTGGGCTTGGCTTCCCCGGAGGCTGCCTTCTTGTTGAGTTTAAAGGAGCCAGAAGCACCGGTGCCTTTCGTTTGCACCAGAGTGCCCTTGCTCACCAGGCTCTTGAGACCAAGTTTGATACGGCTGTTGTTTTTCTCCACATCATAGCCGGCGGCAGCCAACGCTTTTTTCAGAGCAGCCAGAGAAACTCCGCTACGCTCTTTAGAGGCGGCCACAGCCTTGGTGATGAGCTCTGACACCGGGGGACCAGACGCCTTACGAGGCGTACCCCCAGCCTTTTTGGCCGCCTTCTTCTTTACAGGGGCCTTCTCCGCAGGAGGCGCGGCAGCGGGAGCGGCAGGAGCAGTCTCGGACATGTTGAGAATCAAAAACTCGGGTACAAGTGGCAAAGCGCCGATGAAGCAGCGCCTGGGCAGGGCCGCTGTATATATAGAGCGCAGGCGCGCTCTGATTGGTGCTCTGGTCGCCCGCCTGGCTGGCAGGCTCTGAGCCGCTGCGCTGCTCCCAAGTTGTGTTTGTTCCACCTCACAAAAGGGGAAAAATATTAAAATTCCCCGCACCAAATCACTTGGGTTTGGTCAGGAAAGGATCTCAGAAGCCTCGGGCTTCATGCTCTTCATTTATTTTTTCCACAAACACAAAAACAACGCGTCCAGGCGTCCCCAATTCCCCCAACTCCGAAGGAAGTCTGGGGCAGTCAGAGACCACTTTCTGTT	-			P-0046865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	346	44	0				ENST00000343677	NM_005319.3			1-Jan																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878449	151878465	+	frameshift_variant	Frame_Shift_Del	DEL	GAGTTCCAGGAGGTTGA	GAGTTCCAGGAGGTTGA	-			P-0046865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	106	470	0	ENST00000262189.6:c.6480_6496del	p.Gln2161ProfsTer6	p.Q2161Pfs*6	ENST00000262189	NM_170606.2	2160	tcTCAACCTCCTGGAACTCcc/tccc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929062	44929062	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	C	C	AACCAAAG			P-0046865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	38	381	0	ENST00000377967.4:c.2162delinsAACCAAAG	p.Ser721Ter	p.S721*	ENST00000377967	NM_021140.2	721	tCa/tAACCAAAGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0046869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	45	618	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	84	317	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0046870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	72	519	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	21	608	0	ENST00000269305.4:c.538G>T	p.Glu180Ter	p.E180*	ENST00000269305	NM_001126112.2	180	Gag/Tag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864117	57864117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	139	521	0	ENST00000228682.2:c.1594C>T	p.Arg532Cys	p.R532C	ENST00000228682	NM_005269.2	532	Cgc/Tgc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243668602	243668602	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	66	301	0	ENST00000263826.5:c.1389G>C	p.Glu463Asp	p.E463D	ENST00000263826	NM_005465.4	463	gaG/gaC																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434839	110434839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	78	595	0	ENST00000375856.3:c.3562G>T	p.Gly1188Cys	p.G1188C	ENST00000375856	NM_003749.2	1188	Ggc/Tgc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14042054	14042054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	41	297	0	ENST00000311895.7:c.2601G>A	p.Met867Ile	p.M867I	ENST00000311895	NM_005236.2	867	atG/atA																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224160	36224160	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	52	583	0	ENST00000222270.7:c.6710G>T	p.Gly2237Val	p.G2237V	ENST00000222270	NM_014727.1	2237	gGc/gTc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715679	30715679	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	27	254	0	ENST00000359013.4:c.1412A>C	p.Asp471Ala	p.D471A	ENST00000359013	NM_001024847.2	471	gAt/gCt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467942	66467942	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	23	239	0	ENST00000273854.3:c.327G>C	p.Gln109His	p.Q109H	ENST00000273854	NM_004439.5	109	caG/caC																																																																															
MED12	9968	MSKCC	GRCh37	X	70344962	70344962	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	74	235	0	ENST00000374080.3:c.2192A>C	p.His731Pro	p.H731P	ENST00000374080		731	cAc/cCc																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123504042	123504042	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	17	114	0	ENST00000371139.4:c.218A>C	p.His73Pro	p.H73P	ENST00000371139	NM_001114937.2	73	cAt/cCt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0046875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	886	614	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	369	807	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514650	103514650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	75	386	0	ENST00000355739.4:c.1151C>T	p.Ser384Leu	p.S384L	ENST00000355739	NM_000123.3	384	tCa/tTa																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913233		P-0046881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	533	743	1	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579533	7579533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	506	725	2	ENST00000269305.4:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000269305	NM_001126112.2	52	Caa/Taa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243897	41243901	+	frameshift_variant	Frame_Shift_Del	DEL	AGATA	AGATA	-			P-0046881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	345	487	0	ENST00000357654.3:c.3647_3651del	p.Leu1216Ter	p.L1216*	ENST00000357654	NM_007294.3	1216	tTATCT/t																																																																															
MET	4233	MSKCC	GRCh37	7	116411884	116411893	+	intron_variant	Intron	DEL	TCTTTCTCTC	TCTTTCTCTC	-			P-0046949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	349	787	0	ENST00000397752.3:c.2888-18_2888-9delCTTTCTCTCT		p.*963*	ENST00000397752	NM_000245.2																																																																																	
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0046847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	201	492	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
RB1	5925	MSKCC	GRCh37	13	48951053	48951053	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0046847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	12	191	0	ENST00000267163.4:c.1216-1G>A		p.X406_splice	ENST00000267163	NM_000321.2	406																																																																																
TP53BP1	7158	MSKCC	GRCh37	15	43720221	43720221	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	57	381	0	ENST00000382044.4:c.3821T>G	p.Val1274Gly	p.V1274G	ENST00000382044	NM_001141980.1	1274	gTa/gGa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105744	27105760	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGGAGATAGCCTTTT	TGAGGAGATAGCCTTTT	CAA			P-0046848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	155	363	1	ENST00000324856.7:c.5355_5371delinsCAA	p.Glu1786AsnfsTer11	p.E1786Nfs*11	ENST00000324856	NM_006015.4	1785	gaTGAGGAGATAGCCTTTTca/gaCAAca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220123	5220123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	162	644	0	ENST00000357368.4:c.3592C>T	p.His1198Tyr	p.H1198Y	ENST00000357368	NM_002850.3	1198	Cac/Tac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15297916	15297916	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0046848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	177	702	0	ENST00000263388.2:c.1840G>A	p.Gly614Ser	p.G614S	ENST00000263388	NM_000435.2	614	Ggt/Agt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138376614	138376614	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	77	401	0	ENST00000289153.2:c.2860G>T	p.Glu954Ter	p.E954*	ENST00000289153	NM_006219.2	954	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0046848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	109	207	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450321	50450321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	126	601	0	ENST00000331340.3:c.505G>A	p.Gly169Arg	p.G169R	ENST00000331340	NM_006060.4	169	Ggg/Agg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945117	151945117	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	16	286	0	ENST00000262189.6:c.2402C>G	p.Pro801Arg	p.P801R	ENST00000262189	NM_170606.2	801	cCt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0046850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	22	333	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	15	330	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775623976		P-0046851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	14	309	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0046851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	19	413	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0046851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	35	396	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	17	510	0	ENST00000269305.4:c.800G>A	p.Arg267Gln	p.R267Q	ENST00000269305	NM_001126112.2	267	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	99	365	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0046859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	104	337	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579406	7579406	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	119	615	0	ENST00000269305.4:c.281C>A	p.Ser94Ter	p.S94*	ENST00000269305	NM_001126112.2	94	tCa/tAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106598	27106599	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0046859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	138	593	0	ENST00000324856.7:c.6209_6210del	p.Gln2070LeufsTer28	p.Q2070Lfs*28	ENST00000324856	NM_006015.4	2070	cAG/c																																																																															
POLE	5426	MSKCC	GRCh37	12	133215861	133215861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	27	350	1	ENST00000320574.5:c.5402G>A	p.Gly1801Asp	p.G1801D	ENST00000320574	NM_006231.2	1801	gGc/gAc																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458407	12458407	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	136	481	0	ENST00000287820.6:c.1024C>A	p.Gln342Lys	p.Q342K	ENST00000287820	NM_015869.4	342	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	293	515	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55138642	55138642	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143344944		P-0046860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	96	350	0	ENST00000257290.5:c.1319C>T	p.Thr440Met	p.T440M	ENST00000257290	NM_006206.4	440	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0046860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	109	189	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32189003	32189003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	229	561	1	ENST00000375023.3:c.551C>T	p.Pro184Leu	p.P184L	ENST00000375023	NM_004557.3	184	cCg/cTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42042300	42042301	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0046860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	159	320	0	ENST00000219905.7:c.6499_6500del	p.Leu2167GlyfsTer27	p.L2167Gfs*27	ENST00000219905	NM_001164273.1	2165	gaCTct/gact																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	334	517	0	ENST00000269305.4:c.406del	p.Gln136AsnfsTer34	p.Q136Nfs*34	ENST00000269305	NM_001126112.2	136	Caa/aa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153271192	153271192	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0046860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	35	153	0	ENST00000281708.4:c.584+2T>C		p.X195_splice	ENST00000281708	NM_033632.3	195																																																																																
PIK3CD	5293	MSKCC	GRCh37	1	9780039	9780039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	279	495	1	ENST00000377346.4:c.1303G>A	p.Gly435Arg	p.G435R	ENST00000377346	NM_005026.3	435	Ggg/Agg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805360	89805361	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0046860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	155	394	0	ENST00000389301.3:c.4188_4189dup	p.Thr1397LysfsTer11	p.T1397Kfs*11	ENST00000389301	NM_000135.2	1397	aca/aAAca																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212589858	212589858	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	196	384	0	ENST00000342788.4:c.684C>A	p.Asp228Glu	p.D228E	ENST00000342788	NM_005235.2	228	gaC/gaA																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1314905	1314905	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0046860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	83	267	0				ENST00000381566																																																																																		
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0046670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	208	865	2	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	89	317	0	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0046670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	318	830	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41275751	41275751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	177	539	0	ENST00000349496.5:c.1646G>A	p.Arg549His	p.R549H	ENST00000349496	NM_001904.3	549	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112162946	112162946	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0046670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	107	277	0	ENST00000257430.4:c.1548+2T>C		p.X516_splice	ENST00000257430	NM_000038.5	516																																																																																
GLI1	2735	MSKCC	GRCh37	12	57861171	57861171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	129	587	0	ENST00000228682.2:c.968G>A	p.Arg323Gln	p.R323Q	ENST00000228682	NM_005269.2	323	cGg/cAg																																																																															
BLM	641	MSKCC	GRCh37	15	91303452	91303452	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	39	320	0	ENST00000355112.3:c.1163A>T	p.Asp388Val	p.D388V	ENST00000355112	NM_000057.2	388	gAt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0023552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			242	40	344	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0023552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	146	538	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
INSR	3643	MSKCC	GRCh37	19	7141702	7141702	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			476	45	410	0	ENST00000302850.5:c.2668C>T	p.Arg890Ter	p.R890*	ENST00000302850	NM_000208.2	890	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578501	7578518	+	inframe_deletion	In_Frame_Del	DEL	CACAGGGCAGGTCTTGGC	CACAGGGCAGGTCTTGGC	-			P-0046137-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			962	331	1065	0	ENST00000269305.4:c.412_429del	p.Ala138_Val143del	p.A138_V143del	ENST00000269305	NM_001126112.2	138	GCCAAGACCTGCCCTGTG/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	41	392	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			932	149	925	1	ENST00000326873.7:c.667G>A	p.Glu223Lys	p.E223K	ENST00000326873	NM_000455.4	223	Gag/Aag																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987135	36987135	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			774	80	840	0	ENST00000354822.5:c.554del	p.Pro185ArgfsTer43	p.P185Rfs*43	ENST00000354822	NM_001079668.2	185	cCg/cg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306605	41306605	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			754	56	758	0	ENST00000373198.4:c.1054C>A	p.Pro352Thr	p.P352T	ENST00000373198	NM_133170.3	352	Ccc/Acc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18544093	18544093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	35	273	0	ENST00000266497.5:c.1910C>A	p.Pro637His	p.P637H	ENST00000266497		637	cCt/cAt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30093389	30093389	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	48	436	1	ENST00000331968.5:c.1874G>T	p.Ser625Ile	p.S625I	ENST00000331968	NM_002742.2	625	aGc/aTc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968239	2968239	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	90	901	0	ENST00000396946.4:c.1747C>A	p.His583Asn	p.H583N	ENST00000396946	NM_032415.4	583	Cat/Aat																																																																															
ATRX	546	MSKCC	GRCh37	X	76829747	76829747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			258	62	276	0	ENST00000373344.5:c.6294G>T	p.Trp2098Cys	p.W2098C	ENST00000373344	NM_000489.3	2098	tgG/tgT																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0046654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	98	322	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	586	767	2	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900949	114900949	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	120	447	0	ENST00000543371.1:c.561del	p.Val188CysfsTer37	p.V188Cfs*37	ENST00000543371	NM_001198531.1	187	Aaa/aa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41408894	41408894	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	47	372	0	ENST00000373198.4:c.532G>T	p.Ala178Ser	p.A178S	ENST00000373198	NM_133170.3	178	Gcc/Tcc																																																																															
APC	324	MSKCC	GRCh37	5	112175277	112175278	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	43	180	0	ENST00000257430.4:c.3989dup	p.Arg1331Ter	p.R1331*	ENST00000257430	NM_000038.5	1329	cac/caCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	111	394	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572189	64572189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	119	661	2	ENST00000337652.1:c.1465C>T	p.Arg489Trp	p.R489W	ENST00000337652	NM_130803.2	489	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974783	21974786	+	frameshift_variant	Frame_Shift_Del	DEL	CAGT	CAGT	-			P-0046664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	55	260	0	ENST00000304494.5:c.41_44delACTG	p.Asp14GlyfsTer11	p.D14Gfs*11	ENST00000304494	NM_000077.4	14	gACTGg/gg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907037	101907037	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	40	261	0	ENST00000374994.4:c.997G>C	p.Asp333His	p.D333H	ENST00000374994	NM_004612.2	333	Gat/Cat																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940720	71940720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	109	659	0	ENST00000298229.2:c.767C>G	p.Thr256Arg	p.T256R	ENST00000298229	NM_001567.3	256	aCa/aGa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434414	110434414	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	129	807	0	ENST00000375856.3:c.3987C>G	p.His1329Gln	p.H1329Q	ENST00000375856	NM_003749.2	1329	caC/caG																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135378	30135378	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	33	322	0	ENST00000331968.5:c.440del	p.His147ProfsTer36	p.H147Pfs*36	ENST00000331968	NM_002742.2	147	cAc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	162	804	2	ENST00000269305.4:c.487del	p.Tyr163ThrfsTer7	p.Y163Tfs*7	ENST00000269305	NM_001126112.2	163	Tac/ac																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981594	70981594	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	104	957	0	ENST00000276594.2:c.502C>G	p.Gln168Glu	p.Q168E	ENST00000276594	NM_024504.3	168	Cag/Gag																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772013	135772013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	85	473	0	ENST00000298552.3:c.3104G>T	p.Gly1035Val	p.G1035V	ENST00000298552	NM_001162426.1	1035	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0046671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	56	682	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057087	180057087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	59	714	1	ENST00000261937.6:c.532C>A	p.Pro178Thr	p.P178T	ENST00000261937	NM_182925.4	178	Cca/Aca																																																																															
WT1	7490	MSKCC	GRCh37	11	32417887	32417887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	186	524	0	ENST00000332351.3:c.1165C>T	p.Arg389Cys	p.R389C	ENST00000332351	NM_024426.4	389	Cgc/Tgc																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540206	23540207	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTCCTCCCTCTGGCTCTGGCTCTGGCTCCGGCTCCGG			P-0046680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	94	425	0	ENST00000380871.4:c.160_196dup	p.Arg66ProfsTer54	p.R66Pfs*54	ENST00000380871	NM_006167.3	66	cgc/cCCGGAGCCGGAGCCAGAGCCAGAGCCAGAGGGAGGACgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	31	335	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0046692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	39	485	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0046692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	27	337	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112162890	112162891	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTAT			P-0046692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	29	368	0	ENST00000257430.4:c.1495_1496insTATC	p.Arg499LeufsTer39	p.R499Lfs*39	ENST00000257430	NM_000038.5	498	-/CTAT																																																																															
TP53	7157	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	150	582	0	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637555	52637555	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	70	248	0	ENST00000394830.3:c.2761C>T	p.Arg921Ter	p.R921*	ENST00000394830	NM_018313.4	921	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258970	153258970	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	51	172	0	ENST00000281708.4:c.845C>A	p.Ser282Ter	p.S282*	ENST00000281708	NM_033632.3	282	tCa/tAa																																																																															
CASP8	841	MSKCC	GRCh37	2	202149973	202149973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	139	449	0	ENST00000358485.4:c.1414C>T	p.Arg472Ter	p.R472*	ENST00000358485	NM_001080125.1	472	Cga/Tga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564671	86564671	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	101	702	0	ENST00000274376.6:c.407del	p.Pro136LeufsTer38	p.P136Lfs*38	ENST00000274376	NM_002890.2	135	Ccc/cc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391458	139391458	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201613894		P-0046694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	121	803	1	ENST00000277541.6:c.6733G>A	p.Gly2245Arg	p.G2245R	ENST00000277541	NM_017617.3	2245	Ggg/Agg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426700	49426700	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	76	272	0	ENST00000301067.7:c.11788C>T	p.Gln3930Ter	p.Q3930*	ENST00000301067	NM_003482.3	3930	Cag/Tag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176673717	176673717	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	78	231	0	ENST00000439151.2:c.4417C>T	p.Arg1473Ter	p.R1473*	ENST00000439151	NM_022455.4	1473	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433632	49433633	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0046694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	140	821	0	ENST00000301067.7:c.7920_7921del	p.Pro2641CysfsTer13	p.P2641Cfs*13	ENST00000301067	NM_003482.3	2640	tcTCct/tcct																																																																															
CARM1	10498	MSKCC	GRCh37	19	11024706	11024706	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139789571		P-0046694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	57	304	0	ENST00000327064.4:c.823G>A	p.Ala275Thr	p.A275T	ENST00000327064	NM_199141.1	275	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213908	36213909	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0046694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	93	618	0	ENST00000222270.7:c.2735_2736del	p.Ala912ValfsTer4	p.A912Vfs*4	ENST00000222270	NM_014727.1	912	GCg/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0046699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	506	546	6	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0046699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	220	294	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508499	106508499	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752602335		P-0046699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	117	302	0	ENST00000359195.3:c.493G>A	p.Val165Ile	p.V165I	ENST00000359195	NM_002649.2	165	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112174438	112174438	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	46	167	0	ENST00000257430.4:c.3147G>A	p.Trp1049Ter	p.W1049*	ENST00000257430	NM_000038.5	1049	tgG/tgA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270144	66270144	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	126	255	0	ENST00000273854.3:c.1738A>G	p.Thr580Ala	p.T580A	ENST00000273854	NM_004439.5	580	Aca/Gca																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604797	48604797	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	143	281	0	ENST00000342988.3:c.1619T>G	p.Leu540Arg	p.L540R	ENST00000342988	NM_005359.5	540	cTt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175244	112175245	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0046699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	76	204	0	ENST00000257430.4:c.3954_3955dup	p.Pro1319LeufsTer3	p.P1319Lfs*3	ENST00000257430	NM_000038.5	1318	gat/gaTCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0046712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	26	878	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0046712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	43	279	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724439	162724439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	31	401	0	ENST00000367921.3:c.211G>T	p.Ala71Ser	p.A71S	ENST00000367921	NM_006182.2	71	Gcc/Tcc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229612	5229612	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	33	59	0	ENST00000357368.4:c.2239G>C	p.Gly747Arg	p.G747R	ENST00000357368	NM_002850.3	747	Ggc/Cgc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945792	17945792	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	50	712	0	ENST00000458235.1:c.2068T>A	p.Trp690Arg	p.W690R	ENST00000458235	NM_000215.3	690	Tgg/Agg																																																																															
BARD1	580	MSKCC	GRCh37	2	215645717	215645717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	11	436	0	ENST00000260947.4:c.881G>T	p.Arg294Met	p.R294M	ENST00000260947	NM_000465.2	294	aGg/aTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76937825	76937825	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	10	456	0	ENST00000373344.5:c.2923G>T	p.Asp975Tyr	p.D975Y	ENST00000373344	NM_000489.3	975	Gat/Tat																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	60	271	0	ENST00000397062.3:c.101G>C	p.Arg34Pro	p.R34P	ENST00000397062	NM_006164.4	34	cGa/cCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0046724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	120	551	2	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637121	176637122	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	74	436	1	ENST00000439151.2:c.1727dup	p.Asn576LysfsTer8	p.N576Kfs*8	ENST00000439151	NM_022455.4	574	gga/ggAa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970979	21970979	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	160	642	0	ENST00000304494.5:c.379del	p.Ala127HisfsTer19	p.A127Hfs*19	ENST00000304494	NM_000077.4	127	Gca/ca																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30253850	30253850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	93	525	0	ENST00000307677.4:c.604G>A	p.Glu202Lys	p.E202K	ENST00000307677	NM_138578.1	202	Gag/Aag																																																																															
RET	5979	MSKCC	GRCh37	10	43600402	43600402	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0046724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	93	468	1	ENST00000355710.3:c.628G>T	p.Glu210Ter	p.E210*	ENST00000355710	NM_020975.4	210	Gag/Tag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30095705	30095705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	67	288	0	ENST00000331968.5:c.1783G>A	p.Gly595Arg	p.G595R	ENST00000331968	NM_002742.2	595	Gga/Aga																																																																															
MDM4	4194	MSKCC	GRCh37	1	204494722	204494722	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0046726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	75	349	0	ENST00000367182.3:c.76C>A	p.Gln26Lys	p.Q26K	ENST00000367182	NM_001278516.1	26	Cag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	99	336	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993860	72993860	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62639999		P-0046753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	60	607	0	ENST00000268489.5:c.185C>T	p.Ala62Val	p.A62V	ENST00000268489	NM_006885.3	62	gCg/gTg																																																																															
ATM	472	MSKCC	GRCh37	11	108203492	108203492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138941496		P-0046753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	43	149	0	ENST00000278616.4:c.7792C>T	p.Arg2598Ter	p.R2598*	ENST00000278616	NM_000051.3	2598	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108205774	108205774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	169	289	0	ENST00000278616.4:c.8089A>G	p.Asn2697Asp	p.N2697D	ENST00000278616	NM_000051.3	2697	Aat/Gat																																																																															
STK11	6794	MSKCC	GRCh37	19	1207089	1207090	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0046753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	394	876	0	ENST00000326873.7:c.178_179dup	p.Gly61ThrfsTer4	p.G61Tfs*4	ENST00000326873	NM_000455.4	59	-/TA																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62326437	62326437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	341	1013	0	ENST00000508582.2:c.3434G>A	p.Arg1145His	p.R1145H	ENST00000508582		1145	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	395	384	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211757	2211757	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	175	827	1	ENST00000398665.3:c.1473C>G	p.Phe491Leu	p.F491L	ENST00000398665	NM_032482.2	491	ttC/ttG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	436	1050	0	ENST00000269305.4:c.461delG	p.Gly154AlafsTer16	p.G154Afs*16	ENST00000269305	NM_001126112.2	154	gGc/gc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602872	10602872	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	613	1020	0	ENST00000171111.5:c.706G>T	p.Asp236Tyr	p.D236Y	ENST00000171111	NM_203500.1	236	Gac/Tac																																																																															
MED12	9968	MSKCC	GRCh37	X	70340937	70340937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	258	654	0	ENST00000374080.3:c.670C>A	p.His224Asn	p.H224N	ENST00000374080		224	Cat/Aat																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521660	89521660	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	221	427	0	ENST00000336596.2:c.2737T>A	p.Phe913Ile	p.F913I	ENST00000336596	NM_005233.5	913	Ttc/Atc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30099962	30099962	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	92	421	0	ENST00000331968.5:c.1658G>T	p.Gly553Val	p.G553V	ENST00000331968	NM_002742.2	553	gGa/gTa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222372	2222372	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	271	902	0	ENST00000326181.6:c.656G>C	p.Arg219Pro	p.R219P	ENST00000326181	NM_032271.2	219	cGg/cCg																																																																															
NF1	4763	MSKCC	GRCh37	17	29684320	29684320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	29	410	1	ENST00000358273.4:c.7903G>T	p.Asp2635Tyr	p.D2635Y	ENST00000358273	NM_001042492.2	2635	Gat/Tat																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210818	2210818	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	104	525	0	ENST00000398665.3:c.1315C>G	p.Gln439Glu	p.Q439E	ENST00000398665	NM_032482.2	439	Cag/Gag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89462411	89462411	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	190	469	0	ENST00000336596.2:c.1883G>T	p.Gly628Val	p.G628V	ENST00000336596	NM_005233.5	628	gGa/gTa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117866618	117866618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	82	353	0	ENST00000297338.2:c.1027G>A	p.Asp343Asn	p.D343N	ENST00000297338	NM_006265.2	343	Gat/Aat																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737642	145737642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	586	1035	1	ENST00000428558.2:c.3121G>A	p.Gly1041Arg	p.G1041R	ENST00000428558	NM_004260.3	1041	Ggg/Agg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376063	8376063	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	19	223	0	ENST00000356435.5:c.4534A>G	p.Arg1512Gly	p.R1512G	ENST00000356435		1512	Aga/Gga																																																																															
XIAP	331	MSKCC	GRCh37	X	123040972	123040972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	25	178	0	ENST00000355640.3:c.1435G>A	p.Asp479Asn	p.D479N	ENST00000355640		479	Gac/Aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0046757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	65	314	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0046757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	89	290	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
MGA	23269	MSKCC	GRCh37	15	42052713	42052716	+	frameshift_variant	Frame_Shift_Del	DEL	CTCA	CTCA	-			P-0046757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	118	344	0	ENST00000219905.7:c.7384_7387del	p.Leu2462PhefsTer12	p.L2462Ffs*12	ENST00000219905	NM_001164273.1	2462	CTCAtt/tt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	77	283	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	345	673	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738411	145738416	+	inframe_deletion	In_Frame_Del	DEL	GGTGCA	GGTGCA	-			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	144	870	0	ENST00000428558.2:c.2569_2574delTGCACC	p.Cys857_Thr858del	p.C857_T858del	ENST00000428558	NM_004260.3	857	TGCACC/-																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	60	927	6	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030323	180030323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	209	841	3	ENST00000261937.6:c.3961C>T	p.Arg1321Trp	p.R1321W	ENST00000261937	NM_182925.4	1321	Cgg/Tgg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	136	612	8	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593507	48593507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	102	207	1	ENST00000342988.3:c.1258C>T	p.Arg420Cys	p.R420C	ENST00000342988	NM_005359.5	420	Cgt/Tgt																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176330	24176330	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	135	740	0	ENST00000263121.7:c.1121G>A	p.Arg374Gln	p.R374Q	ENST00000263121	NM_003073.3	374	cGg/cAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781901	3781903	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-	rs751071525		P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	177	533	0	ENST00000262367.5:c.4764_4766del	p.Lys1588del	p.K1588del	ENST00000262367	NM_004380.2	1588	aaGAAc/aac																																																																															
PGR	5241	MSKCC	GRCh37	11	100998169	100998169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	62	413	1	ENST00000325455.5:c.1633C>A	p.Leu545Met	p.L545M	ENST00000325455	NM_001202474.3	545	Ctg/Atg																																																																															
RIT1	6016	MSKCC	GRCh37	1	155870205	155870205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	126	422	0	ENST00000368323.3:c.634C>T	p.Arg212Trp	p.R212W	ENST00000368323	NM_006912.5	212	Cgg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713386	40713386	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	173	652	1	ENST00000373198.4:c.4129C>T	p.Arg1377Ter	p.R1377*	ENST00000373198	NM_133170.3	1377	Cga/Tga																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936307	49936307	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	158	476	0	ENST00000296474.3:c.1541G>T	p.Gly514Val	p.G514V	ENST00000296474	NM_002447.2	514	gGg/gTg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188297	32188297	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	153	719	0	ENST00000375023.3:c.1044del	p.Gly349AlafsTer49	p.G349Afs*49	ENST00000375023	NM_004557.3	348	ggC/gg																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346220	152346220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	111	440	7	ENST00000359321.1:c.350del	p.Leu117TrpfsTer17	p.L117Wfs*17	ENST00000359321	NM_005431.1	117	tTg/tg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289272	33289272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	132	409	0	ENST00000374542.5:c.280C>T	p.Arg94Cys	p.R94C	ENST00000374542	NM_001141970.1	94	Cgt/Tgt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	231	473	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016675	12016675	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	74	198	1	ENST00000353533.5:c.811G>A	p.Ala271Thr	p.A271T	ENST00000353533	NM_003010.3	271	Gca/Aca																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	191	837	6	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29106023	29106023	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	75	228	1	ENST00000328354.6:c.817G>T	p.Glu273Ter	p.E273*	ENST00000328354	NM_007194.3	273	Gaa/Taa																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128246746	128246746	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	116	460	0	ENST00000265960.3:c.1183C>T	p.Arg395Ter	p.R395*	ENST00000265960	NM_001006617.1	395	Cga/Tga																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43730536	43730536	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	131	372	0	ENST00000382044.4:c.3177del	p.Thr1060ProfsTer36	p.T1060Pfs*36	ENST00000382044	NM_001141980.1	1059	ccC/cc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858929	57858929	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	222	581	1	ENST00000228682.2:c.429del	p.Ser146ArgfsTer19	p.S146Rfs*19	ENST00000228682	NM_005269.2	142	cAa/ca																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138097	2138097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	239	829	0	ENST00000219476.3:c.5117G>A	p.Arg1706His	p.R1706H	ENST00000219476	NM_000548.3	1706	cGc/cAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272238	15272238	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	316	757	1	ENST00000263388.2:c.6201del	p.Lys2069ArgfsTer16	p.K2069Rfs*16	ENST00000263388	NM_000435.2	2067	ccC/cc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158637067	158637068	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	130	494	3	ENST00000263640.3:c.111_112dupTG	p.Glu38ValfsTer21	p.E38Vfs*21	ENST00000263640	NM_001105.4	38	gaa/gTGaa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138461564	138461564	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202220571		P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	93	366	0	ENST00000289153.2:c.457C>T	p.Arg153Cys	p.R153C	ENST00000289153	NM_006219.2	153	Cgc/Tgc																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182662919	182662919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	43	351	0	ENST00000292782.4:c.743G>A	p.Arg248His	p.R248H	ENST00000292782	NM_020640.2	248	cGc/cAc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206653405	206653405	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782442134		P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	227	738	0	ENST00000367120.3:c.1289G>A	p.Arg430Gln	p.R430Q	ENST00000367120	NM_014002.3	430	cGg/cAg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085894	16085894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	22	373	0	ENST00000281043.3:c.1070G>A	p.Arg357His	p.R357H	ENST00000281043	NM_005378.4	357	cGt/cAt																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19258520	19258520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	376	798	1	ENST00000162023.5:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000162023		127	cGa/cAa																																																																															
ATM	472	MSKCC	GRCh37	11	108186598	108186598	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	63	234	0	ENST00000278616.4:c.6055T>C	p.Tyr2019His	p.Y2019H	ENST00000278616	NM_000051.3	2019	Tat/Cat																																																																															
POLE	5426	MSKCC	GRCh37	12	133225519	133225519	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143229302		P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	155	558	2	ENST00000320574.5:c.4145G>A	p.Arg1382His	p.R1382H	ENST00000320574	NM_006231.2	1382	cGc/cAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176618907	176618907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	91	290	0	ENST00000439151.2:c.950C>T	p.Thr317Met	p.T317M	ENST00000439151	NM_022455.4	317	aCg/aTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639236	3639236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	225	747	2	ENST00000294008.3:c.4403G>A	p.Arg1468His	p.R1468H	ENST00000294008	NM_032444.2	1468	cGc/cAc																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969982	161969983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	150	501	1	ENST00000366898.1:c.986dup	p.Val330ArgfsTer17	p.V330Rfs*17	ENST00000366898	NM_004562.2	329	ggc/ggGc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70982082	70982082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	157	610	0	ENST00000276594.2:c.14G>A	p.Arg5Gln	p.R5Q	ENST00000276594	NM_024504.3	5	cGg/cAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357101	89357101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	231	664	1	ENST00000301030.4:c.533G>A	p.Arg178His	p.R178H	ENST00000301030	NM_001256183.1	178	cGc/cAc																																																																															
CDC42	998	MSKCC	GRCh37	1	22417991	22417991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	17	34	0	ENST00000344548.3:c.557G>A	p.Arg186His	p.R186H	ENST00000344548	NM_001039802.1	186	cGc/cAc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46736427	46736427	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	126	411	1	ENST00000371975.4:c.1139G>T	p.Arg380Leu	p.R380L	ENST00000371975	NM_003579.3	380	cGg/cTg																																																																															
ATM	472	MSKCC	GRCh37	11	108098420	108098420	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	61	217	0	ENST00000278616.4:c.71del	p.Lys24ArgfsTer10	p.K24Rfs*10	ENST00000278616	NM_000051.3	23	cgA/cg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18499733	18499733	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	74	263	0	ENST00000266497.5:c.1588T>C	p.Tyr530His	p.Y530H	ENST00000266497		530	Tat/Cat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443653	49443653	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	179	599	0	ENST00000301067.7:c.3718A>G	p.Met1240Val	p.M1240V	ENST00000301067	NM_003482.3	1240	Atg/Gtg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28963972	28963972	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	169	269	0	ENST00000282397.4:c.1930G>C	p.Gly644Arg	p.G644R	ENST00000282397	NM_002019.4	644	Ggg/Cgg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396682	396682	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	154	584	0	ENST00000262320.3:c.344T>C	p.Leu115Pro	p.L115P	ENST00000262320	NM_003502.3	115	cTg/cCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821665	72821665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	58	181	0	ENST00000268489.5:c.10510G>A	p.Val3504Ile	p.V3504I	ENST00000268489	NM_006885.3	3504	Gtc/Atc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214128	36214128	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	258	866	0	ENST00000222270.7:c.2954T>C	p.Leu985Pro	p.L985P	ENST00000222270	NM_014727.1	985	cTa/cCa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50916686	50916686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	62	449	0	ENST00000440232.2:c.2158G>A	p.Val720Ile	p.V720I	ENST00000440232	NM_002691.3	720	Gtc/Atc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435880	149435880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	134	570	0	ENST00000286301.3:c.2344C>T	p.Arg782Cys	p.R782C	ENST00000286301	NM_005211.3	782	Cgt/Tgt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149509335	149509335	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	113	470	0	ENST00000261799.4:c.1564A>G	p.Ile522Val	p.I522V	ENST00000261799	NM_002609.3	522	Atc/Gtc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515127	149515127	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	154	458	0	ENST00000261799.4:c.355T>G	p.Phe119Val	p.F119V	ENST00000261799	NM_002609.3	119	Ttt/Gtt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33286773	33286773	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	136	462	1	ENST00000374542.5:c.2163+1G>A		p.X721_splice	ENST00000374542	NM_001141970.1	721																																																																																
ROS1	6098	MSKCC	GRCh37	6	117647446	117647448	+	inframe_deletion	In_Frame_Del	DEL	GCA	GCA	-			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	69	368	0	ENST00000368508.3:c.5496_5498del	p.Ala1833del	p.A1833del	ENST00000368508	NM_002944.2	1832	gcTGCa/gca																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163730	152163730	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	59	192	0	ENST00000206249.3:c.453-2A>G		p.X151_splice	ENST00000206249	NM_000125.3	151																																																																																
RXRA	6256	MSKCC	GRCh37	9	137300133	137300133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	386	743	0	ENST00000481739.1:c.418G>A	p.Asp140Asn	p.D140N	ENST00000481739	NM_002957.4	140	Gac/Aac																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370236	40370236	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	98	726	1	ENST00000293328.3:c.1102C>G	p.Gln368Glu	p.Q368E	ENST00000293328	NM_012448.3	368	Cag/Gag																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370235	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	101	681	1	ENST00000293328.3:c.1103del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000293328	NM_012448.3	368	cAg/cg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910742	29910743	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	173	797	0	ENST00000376809.5:c.282_283del	p.Gln94HisfsTer4	p.Q94Hfs*4	ENST00000376809	NM_002116.7	94	caGTca/caca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	326	762	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39241979	39241979	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	33	209	0	ENST00000402219.2:c.1867T>G	p.Phe623Val	p.F623V	ENST00000402219	NM_005633.3	623	Ttt/Gtt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097701	8097701	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	40	501	1	ENST00000346208.3:c.83A>T	p.His28Leu	p.H28L	ENST00000346208		28	cAc/cTc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313380	30313380	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	76	560	0	ENST00000262643.3:c.980G>C	p.Cys327Ser	p.C327S	ENST00000262643	NM_001238.2	327	tGt/tCt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543847	212543847	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	84	346	0	ENST00000342788.4:c.1552G>C	p.Asp518His	p.D518H	ENST00000342788	NM_005235.2	518	Gac/Cac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178947841	178947841	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	119	259	0	ENST00000263967.3:c.2716G>C	p.Val906Leu	p.V906L	ENST00000263967	NM_006218.2	906	Gta/Cta																																																																															
APC	324	MSKCC	GRCh37	5	112173659	112173659	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0046760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	174	223	1	ENST00000257430.4:c.2368A>T	p.Arg790Ter	p.R790*	ENST00000257430	NM_000038.5	790	Aga/Tga																																																																															
NBN	4683	MSKCC	GRCh37	8	90965852	90965852	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs143948240		P-0046760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	49	237	0	ENST00000265433.3:c.1465C>G	p.Leu489Val	p.L489V	ENST00000265433	NM_002485.4	489	Ctt/Gtt																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217299	7217316	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGGGCTCCCTAGAAAGG	CAGGGCTCCCTAGAAAGG	-			P-0046776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	124	475	0	ENST00000380728.2:c.398-9_406del		p.X133_splice	ENST00000380728		133																																																																																
TP53	7157	MSKCC	GRCh37	17	7573959	7573995	+	frameshift_variant	Frame_Shift_Del	DEL	CCCAGCCTGGGCATCCTTGAGTTCCAAGGCCTCATTC	CCCAGCCTGGGCATCCTTGAGTTCCAAGGCCTCATTC	-			P-0046776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	76	615	0	ENST00000269305.4:c.1032_1068del	p.Asn345ArgfsTer13	p.N345Rfs*13	ENST00000269305	NM_001126112.2	344	ctGAATGAGGCCTTGGAACTCAAGGATGCCCAGGCTGGG/ct																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31394051	31394051	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	29	231	0	ENST00000328111.2:c.2338T>C	p.Ser780Pro	p.S780P	ENST00000328111	NM_006892.3	780	Tcg/Ccg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143044517	143044517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	63	260	0	ENST00000262992.4:c.1945G>A	p.Asp649Asn	p.D649N	ENST00000262992	NM_001101669.1	649	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0046778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	264	535	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0046778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	29	182	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119886	70119887	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	339	516	0	ENST00000245479.2:c.889dup	p.Tyr297LeufsTer281	p.Y297Lfs*281	ENST00000245479	NM_000346.3	296	-/T																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395108	139395108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	9	673	3	ENST00000277541.6:c.5830G>A	p.Ala1944Thr	p.A1944T	ENST00000277541	NM_017617.3	1944	Gcc/Acc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0046779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	35	297	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145743003	145743003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	499	183	0	ENST00000428558.2:c.101C>T	p.Ala34Val	p.A34V	ENST00000428558	NM_004260.3	34	gCg/gTg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748035	72748035	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	615	504	0	ENST00000357731.5:c.143T>A	p.Met48Lys	p.M48K	ENST00000357731	NM_173808.2	48	aTg/aAg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647455	3647456	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1254	414	673	1	ENST00000294008.3:c.1607dup	p.Thr537AspfsTer39	p.T537Dfs*39	ENST00000294008	NM_032444.2	536	ctg/ctTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578405	7578427	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCCTCACAACCTCCGTCATGT	GCGCCTCACAACCTCCGTCATGT	-			P-0046780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	782	629	0	ENST00000269305.4:c.503_525del	p.His168LeufsTer5	p.H168Lfs*5	ENST00000269305	NM_001126112.2	168	cACATGACGGAGGTTGTGAGGCGC/c																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15300122	15300122	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1227	883	654	1	ENST00000263388.2:c.1154G>T	p.Gly385Val	p.G385V	ENST00000263388	NM_000435.2	385	gGt/gTt																																																																															
MITF	4286	MSKCC	GRCh37	3	69928292	69928292	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	379	348	1	ENST00000352241.4:c.112G>T	p.Ala38Ser	p.A38S	ENST00000352241	NM_198159.2	38	Gcc/Tcc																																																																															
KIT	3815	MSKCC	GRCh37	4	55593491	55593491	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0046780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	73	229	0	ENST00000288135.5:c.1647+1G>T		p.X549_splice	ENST00000288135	NM_000222.2	549																																																																																
WHSC1L1	54904	MSKCC	GRCh37	8	38186998	38187000	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-			P-0046780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	332	469	0	ENST00000317025.8:c.1477_1479del	p.Gln493del	p.Q493del	ENST00000317025	NM_023034.1	493	CAG/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	125	245	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0046784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	233	535	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0046784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	165	517	1	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448310	56448310	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	62	562	2	ENST00000407977.2:c.337C>T	p.Arg113Ter	p.R113*	ENST00000407977		113	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692918	89692918	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	72	368	0	ENST00000371953.3:c.402G>T	p.Met134Ile	p.M134I	ENST00000371953	NM_000314.4	134	atG/atT																																																																															
TSC1	7248	MSKCC	GRCh37	9	135798741	135798741	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0046784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	13	144	0	ENST00000298552.3:c.502A>T	p.Lys168Ter	p.K168*	ENST00000298552	NM_001162426.1	168	Aaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108159726	108159726	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	56	350	0	ENST00000278616.4:c.4132C>G	p.Pro1378Ala	p.P1378A	ENST00000278616	NM_000051.3	1378	Cca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0046785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	35	411	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	13	92	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940877	49940877	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	170	719	0	ENST00000296474.3:c.166C>T	p.Gln56Ter	p.Q56*	ENST00000296474	NM_002447.2	56	Cag/Tag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979286	93979286	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	65	306	0	ENST00000369303.4:c.1542G>T	p.Gln514His	p.Q514H	ENST00000369303	NM_004440.3	514	caG/caT																																																																															
STK11	6794	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	230	733	0	ENST00000326873.7:c.709G>A	p.Asp237Asn	p.D237N	ENST00000326873	NM_000455.4	237	Gac/Aac																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176104217	176104217	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	141	175	1	ENST00000367669.3:c.897G>T	p.Met299Ile	p.M299I	ENST00000367669	NM_022457.5	299	atG/atT																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50479315	50479315	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	98	378	0	ENST00000394963.4:c.163G>T	p.Gly55Ter	p.G55*	ENST00000394963	NM_003076.4	55	Gga/Tga																																																																															
B2M	567	MSKCC	GRCh37	15	45007734	45007734	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0046787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	20	255	0	ENST00000558401.1:c.181A>T	p.Lys61Ter	p.K61*	ENST00000558401	NM_004048.2	61	Aag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600004	10600005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	176	693	0	ENST00000171111.5:c.1571dup	p.Tyr525LeufsTer2	p.Y525Lfs*2	ENST00000171111	NM_203500.1	524	ggc/ggGc																																																																															
CIC	23152	MSKCC	GRCh37	19	42797354	42797354	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	206	790	0	ENST00000575354.2:c.3716G>A	p.Trp1239Ter	p.W1239*	ENST00000575354	NM_015125.3	1239	tGg/tAg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912383	50912383	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	58	649	0	ENST00000440232.2:c.1897A>C	p.Thr633Pro	p.T633P	ENST00000440232	NM_002691.3	633	Act/Cct																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275204	41275205	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0046787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	98	286	1	ENST00000349496.5:c.1370_1371delinsTT	p.Arg457Ile	p.R457I	ENST00000349496	NM_001904.3	457	aGG/aTT																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933410	39933410	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	159	589	1	ENST00000378444.4:c.1189C>A	p.Pro397Thr	p.P397T	ENST00000378444	NM_001123385.1	397	Ccg/Acg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123220533	123220533	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	130	365	0	ENST00000218089.9:c.3190A>T	p.Ser1064Cys	p.S1064C	ENST00000218089	NM_001042749.1	1064	Agc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	356	237	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0046789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	507	704	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	56	236	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	29	219	0	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175921	112175921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	14	144	1	ENST00000257430.4:c.4630G>T	p.Glu1544Ter	p.E1544*	ENST00000257430	NM_000038.5	1544	Gaa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29654820	29654820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	73	154	0	ENST00000358273.4:c.5572G>A	p.Ala1858Thr	p.A1858T	ENST00000358273	NM_001042492.2	1858	Gca/Aca																																																																															
TBX3	6926	MSKCC	GRCh37	12	115111972	115111972	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	172	404	0	ENST00000257566.3:c.1768C>T	p.Gln590Ter	p.Q590*	ENST00000257566	NM_016569.3	590	Cag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881392	37881392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	109	438	0	ENST00000269571.5:c.2584A>G	p.Thr862Ala	p.T862A	ENST00000269571		862	Aca/Gca																																																																															
APC	324	MSKCC	GRCh37	5	112174357	112174358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	41	152	0	ENST00000257430.4:c.3067dup	p.Thr1023AsnfsTer6	p.T1023Nfs*6	ENST00000257430	NM_000038.5	1022	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7578464	7578476	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGCCGGGCGG	GGGTGCCGGGCGG	-	rs876659215		P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	387	593	0	ENST00000269305.4:c.454_466del	p.Pro152AlafsTer14	p.P152Afs*14	ENST00000269305	NM_001126112.2	152	CCGCCCGGCACCCgc/gc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88676898	88676898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	155	319	0	ENST00000372037.3:c.683G>A	p.Arg228Gln	p.R228Q	ENST00000372037	NM_004329.2	228	cGa/cAa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196093	138196093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	89	154	0	ENST00000237289.4:c.407G>A	p.Arg136His	p.R136H	ENST00000237289	NM_001270507.1	136	cGc/cAc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	464398	464398	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	95	241	0	ENST00000399788.2:c.796C>T	p.Arg266Ter	p.R266*	ENST00000399788	NM_001042603.1	266	Cga/Tga																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81965191	81965191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	183	353	0	ENST00000359376.3:c.2671G>C	p.Asp891His	p.D891H	ENST00000359376	NM_002661.3	891	Gac/Cac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2954976	2954976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	235	462	0	ENST00000396946.4:c.2734C>T	p.Arg912Trp	p.R912W	ENST00000396946	NM_032415.4	912	Cgg/Tgg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121016	29121016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	29	288	0	ENST00000328354.6:c.541C>T	p.Arg181Cys	p.R181C	ENST00000328354	NM_007194.3	181	Cgt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821566	72821581	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTCTCGCACGCCAG	CGCTCTCGCACGCCAG	TGCGA			P-0046797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	75	133	0	ENST00000268489.5:c.10594_10609delinsTCGCA	p.Leu3532SerfsTer35	p.L3532Sfs*35	ENST00000268489	NM_006885.3	3532	CTGGCGTGCGAGAGCGcg/TCGCAcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	55	257	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	138	488	0	ENST00000269305.4:c.658T>A	p.Tyr220Asn	p.Y220N	ENST00000269305	NM_001126112.2	220	Tat/Aat																																																																															
MGA	23269	MSKCC	GRCh37	15	42052632	42052632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	98	317	1	ENST00000219905.7:c.7303C>T	p.Arg2435Trp	p.R2435W	ENST00000219905	NM_001164273.1	2435	Cgg/Tgg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856217	111856217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	71	251	0	ENST00000341259.2:c.268C>T	p.Arg90Trp	p.R90W	ENST00000341259	NM_005475.2	90	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584720	48584721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	75	286	0	ENST00000342988.3:c.799dup	p.Thr267AsnfsTer6	p.T267Nfs*6	ENST00000342988	NM_005359.5	266	-/A																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781515	135781515	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	75	274	0	ENST00000298552.3:c.1450A>G	p.Arg484Gly	p.R484G	ENST00000298552	NM_001162426.1	484	Aga/Gga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	84	327	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	153	603	0	ENST00000269305.4:c.823T>C	p.Cys275Arg	p.C275R	ENST00000269305	NM_001126112.2	275	Tgt/Cgt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216631	2216631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	206	921	1	ENST00000398665.3:c.2275C>T	p.Arg759Cys	p.R759C	ENST00000398665	NM_032482.2	759	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112176027	112176030	+	frameshift_variant	Frame_Shift_Del	DEL	TTAT	TTAT	-			P-0046811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	41	256	0	ENST00000257430.4:c.4738_4741del	p.Ile1580LeufsTer69	p.I1580Lfs*69	ENST00000257430	NM_000038.5	1579	aTTATt/at																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549404	21549404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	114	532	0	ENST00000382592.4:c.2872C>T	p.Arg958Cys	p.R958C	ENST00000382592	NM_014572.2	958	Cgc/Tgc																																																																															
JUN	3725	MSKCC	GRCh37	1	59248416	59248417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	101	508	0	ENST00000371222.2:c.326dup	p.Phe110LeufsTer200	p.F110Lfs*200	ENST00000371222	NM_002228.3	109	ggc/ggGc																																																																															
APC	324	MSKCC	GRCh37	5	112174270	112174271	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	37	264	0	ENST00000257430.4:c.2983dup	p.Cys995LeufsTer13	p.C995Lfs*13	ENST00000257430	NM_000038.5	993	-/T																																																																															
PREX2	80243	MSKCC	GRCh37	8	69028168	69028168	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0046811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	60	392	0	ENST00000288368.4:c.3326+1G>A		p.X1109_splice	ENST00000288368	NM_024870.2	1109																																																																																
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0046812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	67	493	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0046812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	99	841	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71037187	71037209	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGGTCATCATGGCTTGCAGGC	GTGGGTCATCATGGCTTGCAGGC	-			P-0046812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	31	421	0	ENST00000318789.4:c.1082_1104del	p.Arg361ProfsTer92	p.R361Pfs*92	ENST00000318789	NM_032682.5	361	cGCCTGCAAGCCATGATGACCCAC/c																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25994338	25994338	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	78	278	0	ENST00000435504.4:c.475C>T	p.Gln159Ter	p.Q159*	ENST00000435504		159	Cag/Tag																																																																															
TET2	54790	MSKCC	GRCh37	4	106196460	106196460	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	61	336	0	ENST00000380013.4:c.4793A>G	p.Tyr1598Cys	p.Y1598C	ENST00000380013	NM_001127208.2	1598	tAt/tGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0046841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	373	305	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984408	201984408	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	163	566	0	ENST00000359651.3:c.1073C>G	p.Ser358Ter	p.S358*	ENST00000359651		358	tCa/tGa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117866654	117866654	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3227	198	342	0	ENST00000297338.2:c.991G>A	p.Glu331Lys	p.E331K	ENST00000297338	NM_006265.2	331	Gag/Aag																																																																															
MYCL	4610	MSKCC	GRCh37	1	40367066	40367066	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	229	665	0	ENST00000397332.2:c.131A>T	p.Asp44Val	p.D44V	ENST00000397332	NM_001033082.2	44	gAc/gTc																																																																															
TET1	80312	MSKCC	GRCh37	10	70404793	70404793	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	232	299	0	ENST00000373644.4:c.2307A>T	p.Glu769Asp	p.E769D	ENST00000373644	NM_030625.2	769	gaA/gaT																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112940037	112940038	+	missense_variant	Missense_Mutation	DNP	TA	TA	CC			P-0046841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	171	545	0	ENST00000351677.2:c.1689_1690delinsCC	p.Thr564Pro	p.T564P	ENST00000351677	NM_002834.3	563	tgTAct/tgCCct																																																																															
MALT1	10892	MSKCC	GRCh37	18	56381333	56381333	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	44	144	0	ENST00000348428.3:c.977G>C	p.Gly326Ala	p.G326A	ENST00000348428	NM_006785.3	326	gGt/gCt																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505672	186505672	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0046841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	64	163	0	ENST00000323963.5:c.1079+1G>C		p.X360_splice	ENST00000323963		360																																																																																
FAT1	2195	MSKCC	GRCh37	4	187509879	187509879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	101	318	0	ENST00000441802.2:c.13634C>T	p.Ser4545Phe	p.S4545F	ENST00000441802	NM_005245.3	4545	tCc/tTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884915	151884928	+	frameshift_variant	Frame_Shift_Del	DEL	GCATCCGTGAAAAA	GCATCCGTGAAAAA	-			P-0046841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	23	202	0	ENST00000262189.6:c.4665_4678del	p.Phe1556SerfsTer15	p.F1556Sfs*15	ENST00000262189	NM_170606.2	1555	gcTTTTTCACGGATGCct/gcct																																																																															
RAD21	5885	MSKCC	GRCh37	8	117868489	117868489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3275	206	342	0	ENST00000297338.2:c.853G>A	p.Glu285Lys	p.E285K	ENST00000297338	NM_006265.2	285	Gaa/Aaa																																																																															
TEK	7010	MSKCC	GRCh37	9	27218785	27218785	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	130	396	0	ENST00000380036.4:c.3073G>T	p.Gly1025Cys	p.G1025C	ENST00000380036	NM_000459.3	1025	Ggt/Tgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133241895	133241895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	154	439	0	ENST00000320574.5:c.2461C>T	p.Arg821Cys	p.R821C	ENST00000320574	NM_006231.2	821	Cgc/Tgc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	142	311	0	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	221	547	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	28	120	1	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	103	239	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	111	379	1	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	121	312	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	160	510	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	226	604	2	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	51	220	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376675	8376675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	158	399	1	ENST00000356435.5:c.4438G>A	p.Val1480Ile	p.V1480I	ENST00000356435		1480	Gtt/Att																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738073	145738073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	701	818	0	ENST00000428558.2:c.2837G>A	p.Arg946His	p.R946H	ENST00000428558	NM_004260.3	946	cGt/cAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	121	385	0	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223251	5223251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	482	739	2	ENST00000357368.4:c.2552G>A	p.Arg851His	p.R851H	ENST00000357368	NM_002850.3	851	cGc/cAc																																																																															
NF2	4771	MSKCC	GRCh37	22	30064376	30064376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	122	304	0	ENST00000338641.4:c.940G>A	p.Asp314Asn	p.D314N	ENST00000338641	NM_000268.3	314	Gat/Aat																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620541	52620541	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141958485		P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	201	439	0	ENST00000394830.3:c.3212G>A	p.Arg1071His	p.R1071H	ENST00000394830	NM_018313.4	1071	cGc/cAc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104359285	104359285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	169	469	0	ENST00000369902.3:c.1006G>A	p.Ala336Thr	p.A336T	ENST00000369902	NM_016169.3	336	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112175902	112175903	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	52	170	0	ENST00000257430.4:c.4612_4613del	p.Glu1538IlefsTer5	p.E1538Ifs*5	ENST00000257430	NM_000038.5	1537	acAGaa/acaa																																																																															
BARD1	580	MSKCC	GRCh37	2	215674196	215674196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	62	707	0	ENST00000260947.4:c.98C>T	p.Ala33Val	p.A33V	ENST00000260947	NM_000465.2	33	gCc/gTc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46603871	46603871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	166	519	1	ENST00000263734.3:c.1228G>A	p.Ala410Thr	p.A410T	ENST00000263734	NM_001430.4	410	Gcc/Acc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068315	30068315	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141649026		P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	95	241	0	ENST00000331968.5:c.2084G>A	p.Arg695Gln	p.R695Q	ENST00000331968	NM_002742.2	695	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578184	7578184	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146340390		P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	248	500	1	ENST00000269305.4:c.665C>T	p.Pro222Leu	p.P222L	ENST00000269305	NM_001126112.2	222	cCg/cTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100181	27100182	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	77	447	0	ENST00000324856.7:c.3999_4001dupGCA	p.Gln1334dup	p.Q1334dup	ENST00000324856	NM_006015.4	1334	ccg/ccGCAg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884875	134884875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	195	534	1	ENST00000398015.3:c.1651G>A	p.Val551Met	p.V551M	ENST00000398015	NM_004441.4	551	Gtg/Atg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123276929	123276929	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200204947		P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	112	255	0	ENST00000358487.5:c.988C>T	p.Arg330Trp	p.R330W	ENST00000358487	NM_000141.4	330	Cgg/Tgg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946495	71946495	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	147	411	0	ENST00000298229.2:c.2659G>A	p.Glu887Lys	p.E887K	ENST00000298229	NM_001567.3	887	Gag/Aag																																																																															
NF1	4763	MSKCC	GRCh37	17	29509579	29509579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	154	422	0	ENST00000358273.4:c.784C>T	p.Arg262Cys	p.R262C	ENST00000358273	NM_001042492.2	262	Cgt/Tgt																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30293209	30293209	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	123	333	0	ENST00000322652.5:c.503del	p.Asn168MetfsTer22	p.N168Mfs*22	ENST00000322652	NM_015355.2	167	Aaa/aa																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631620	90631620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	242	608	1	ENST00000330062.3:c.649G>A	p.Val217Met	p.V217M	ENST00000330062	NM_002168.2	217	Gtg/Atg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43720287	43720287	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151132652		P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	185	460	1	ENST00000382044.4:c.3755G>A	p.Arg1252His	p.R1252H	ENST00000382044	NM_001141980.1	1252	cGc/cAc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12627233	12627233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	147	408	0	ENST00000251849.4:c.1483C>T	p.Arg495Cys	p.R495C	ENST00000251849	NM_002880.3	495	Cgc/Tgc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40858095	40858095	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	242	522	0	ENST00000428826.2:c.1769G>T	p.Gly590Val	p.G590V	ENST00000428826		590	gGg/gTg																																																																															
B2M	567	MSKCC	GRCh37	15	45003773	45003773	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	168	514	0	ENST00000558401.1:c.29T>C	p.Leu10Pro	p.L10P	ENST00000558401	NM_004048.2	10	cTc/cCc																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656908	45656908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	220	559	1	ENST00000407780.3:c.248G>A	p.Arg83Gln	p.R83Q	ENST00000407780	NM_001283052.1	83	cGa/cAa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508460	106508460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	93	340	0	ENST00000359195.3:c.454C>T	p.Arg152Trp	p.R152W	ENST00000359195	NM_002649.2	152	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108172373	108172373	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	79	254	0	ENST00000278616.4:c.5178-2A>G		p.X1726_splice	ENST00000278616	NM_000051.3	1726																																																																																
BCOR	54880	MSKCC	GRCh37	X	39931970	39931970	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	220	344	0	ENST00000378444.4:c.2629A>G	p.Thr877Ala	p.T877A	ENST00000378444	NM_001123385.1	877	Acc/Gcc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295788	212295788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	115	448	0	ENST00000342788.4:c.2525G>A	p.Arg842Gln	p.R842Q	ENST00000342788	NM_005235.2	842	cGg/cAg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162117	38162117	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115403388		P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	115	309	0	ENST00000317025.8:c.2599G>A	p.Val867Ile	p.V867I	ENST00000317025	NM_023034.1	867	Gtt/Att																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420526	49420526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	207	625	0	ENST00000301067.7:c.15223G>A	p.Gly5075Arg	p.G5075R	ENST00000301067	NM_003482.3	5075	Ggg/Agg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52613085	52613085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	136	317	0	ENST00000394830.3:c.3443G>A	p.Arg1148His	p.R1148H	ENST00000394830	NM_018313.4	1148	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056208	27056208	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	113	535	0	ENST00000324856.7:c.1204T>G	p.Ser402Ala	p.S402A	ENST00000324856	NM_006015.4	402	Tcg/Gcg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175956092	175956092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	100	292	0	ENST00000367669.3:c.2120C>T	p.Ala707Val	p.A707V	ENST00000367669	NM_022457.5	707	gCa/gTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420852	49420852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	166	511	1	ENST00000301067.7:c.14897G>A	p.Arg4966Gln	p.R4966Q	ENST00000301067	NM_003482.3	4966	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431843	49431843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	177	605	3	ENST00000301067.7:c.9296G>A	p.Arg3099His	p.R3099H	ENST00000301067	NM_003482.3	3099	cGc/cAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118901	115118901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	77	283	1	ENST00000257566.3:c.440C>T	p.Ala147Val	p.A147V	ENST00000257566	NM_016569.3	147	gCc/gTc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90630780	90630780	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	130	383	0	ENST00000330062.3:c.706T>G	p.Phe236Val	p.F236V	ENST00000330062	NM_002168.2	236	Ttc/Gtc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343713	343713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	218	658	0	ENST00000262320.3:c.1961C>T	p.Ser654Leu	p.S654L	ENST00000262320	NM_003502.3	654	tCg/tTg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216569	7216569	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	46	489	0	ENST00000380728.2:c.766A>G	p.Met256Val	p.M256V	ENST00000380728		256	Atg/Gtg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440942	56440942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	214	557	0	ENST00000407977.2:c.395G>A	p.Arg132Gln	p.R132Q	ENST00000407977		132	cGa/cAa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58725439	58725439	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	136	372	0	ENST00000305921.3:c.1013T>C	p.Leu338Pro	p.L338P	ENST00000305921	NM_003620.3	338	cTg/cCg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78936747	78936747	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	193	684	0	ENST00000306801.3:c.3829A>G	p.Thr1277Ala	p.T1277A	ENST00000306801	NM_020761.2	1277	Acc/Gcc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229543	5229543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	58	115	0	ENST00000357368.4:c.2308G>T	p.Gly770Trp	p.G770W	ENST00000357368	NM_002850.3	770	Ggg/Tgg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10246888	10246888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	521	712	1	ENST00000340748.4:c.4517G>A	p.Arg1506Gln	p.R1506Q	ENST00000340748		1506	cGg/cAg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303094	15303094	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	211	773	0	ENST00000263388.2:c.356T>C	p.Leu119Pro	p.L119P	ENST00000263388	NM_000435.2	119	cTg/cCg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17950304	17950304	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	214	617	0	ENST00000458235.1:c.1423T>G	p.Cys475Gly	p.C475G	ENST00000458235	NM_000215.3	475	Tgt/Ggt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211108	36211108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150247325		P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	89	740	0	ENST00000222270.7:c.859C>T	p.Arg287Cys	p.R287C	ENST00000222270	NM_014727.1	287	Cgt/Tgt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505421	25505421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	138	656	0	ENST00000264709.3:c.337G>A	p.Gly113Arg	p.G113R	ENST00000264709	NM_175629.2	113	Ggg/Agg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025889	48025890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	99	254	0	ENST00000234420.5:c.768dup	p.Asp257Ter	p.D257*	ENST00000234420	NM_000179.2	256	agt/agTt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198260936	198260936	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	166	490	0	ENST00000335508.6:c.3383T>C	p.Val1128Ala	p.V1128A	ENST00000335508	NM_012433.2	1128	gTa/gCa																																																																															
CASP8	841	MSKCC	GRCh37	2	202149814	202149814	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	42	488	0	ENST00000358485.4:c.1255T>C	p.Cys419Arg	p.C419R	ENST00000358485	NM_001080125.1	419	Tgt/Cgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101089	41101089	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	172	590	0	ENST00000373198.4:c.1267A>G	p.Thr423Ala	p.T423A	ENST00000373198	NM_133170.3	423	Acc/Gcc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44515847	44515847	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	37	385	0	ENST00000291552.4:c.206T>C	p.Val69Ala	p.V69A	ENST00000291552	NM_006758.2	69	gTg/gCg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29106001	29106001	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	112	254	0	ENST00000328354.6:c.839T>C	p.Leu280Pro	p.L280P	ENST00000328354	NM_007194.3	280	cTa/cCa																																																																															
EP300	2033	MSKCC	GRCh37	22	41533737	41533737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	145	406	1	ENST00000263253.7:c.1703G>A	p.Arg568Gln	p.R568Q	ENST00000263253	NM_001429.3	568	cGg/cAg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713673	30713673	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	149	512	0	ENST00000359013.4:c.1073T>G	p.Leu358Arg	p.L358R	ENST00000359013	NM_001024847.2	358	cTa/cGa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436335	52436335	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776746400		P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	187	696	2	ENST00000460680.1:c.2159G>A	p.Arg720His	p.R720H	ENST00000460680	NM_004656.3	720	cGc/cAc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430666	181430666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	175	646	0	ENST00000325404.1:c.518T>C	p.Met173Thr	p.M173T	ENST00000325404	NM_003106.3	173	aTg/aCg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808020	1808020	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	300	743	0	ENST00000260795.2:c.1996T>G	p.Leu666Val	p.L666V	ENST00000260795		666	Ttg/Gtg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867491	35867491	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	67	218	0	ENST00000303115.3:c.305T>C	p.Ile102Thr	p.I102T	ENST00000303115	NM_002185.3	102	aTt/aCt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176683958	176683958	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	90	363	0	ENST00000439151.2:c.4772A>G	p.His1591Arg	p.H1591R	ENST00000439151	NM_022455.4	1591	cAt/cGt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910669	29910669	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	277	885	0	ENST00000376809.5:c.209A>C	p.Glu70Ala	p.E70A	ENST00000376809	NM_002116.7	70	gAg/gCg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672867	30672867	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	187	524	0	ENST00000376406.3:c.4093T>C	p.Ser1365Pro	p.S1365P	ENST00000376406	NM_014641.2	1365	Tca/Cca																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935655	13935655	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	117	408	0	ENST00000405192.2:c.1201A>G	p.Met401Val	p.M401V	ENST00000405192	NM_001163147.1	401	Atg/Gtg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730011	41730011	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	206	506	0	ENST00000242208.4:c.518T>C	p.Ile173Thr	p.I173T	ENST00000242208	NM_002192.2	173	aTc/aCc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133825	38133825	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	210	568	0	ENST00000317025.8:c.4061A>G	p.Gln1354Arg	p.Q1354R	ENST00000317025	NM_023034.1	1354	cAg/cGg																																																																															
AR	367	MSKCC	GRCh37	X	66765402	66765403	+	missense_variant	Missense_Mutation	DNP	CG	CG	GC			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	146	345	0	ENST00000374690.3:c.414_415delinsGC	p.Val139Leu	p.V139L	ENST00000374690	NM_000044.3	138	gcCGtg/gcGCtg																																																																															
MED12	9968	MSKCC	GRCh37	X	70356449	70356449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	197	239	0	ENST00000374080.3:c.5344C>T	p.Arg1782Cys	p.R1782C	ENST00000374080		1782	Cgc/Tgc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0046186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			192	78	241	0	ENST00000288602.6:c.1742A>T	p.Asn581Ile	p.N581I	ENST00000288602	NM_004333.4	581	aAt/aTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610330	10610330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	308	994	0	ENST00000171111.5:c.380G>A	p.Gly127Asp	p.G127D	ENST00000171111	NM_203500.1	127	gGt/gAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038828	47038828	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	288	934	0	ENST00000329236.7:c.604C>T	p.Gln202Ter	p.Q202*	ENST00000329236	NM_001204466.1	202	Cag/Tag																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871632	35871632	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			268	83	298	1	ENST00000216797.5:c.874del	p.Glu292SerfsTer24	p.E292Sfs*24	ENST00000216797	NM_020529.2	292	Gag/ag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992625	72992625	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			390	166	512	0	ENST00000268489.5:c.1420G>T	p.Glu474Ter	p.E474*	ENST00000268489	NM_006885.3	474	Gag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1207118	1207119	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			406	291	875	0	ENST00000326873.7:c.208dup	p.Glu70GlyfsTer93	p.E70Gfs*93	ENST00000326873	NM_000455.4	69	tcg/tcGg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867553	35867553	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			277	56	216	0	ENST00000303115.3:c.367C>A	p.Leu123Ile	p.L123I	ENST00000303115	NM_002185.3	123	Cta/Ata																																																																															
DAXX	1616	MSKCC	GRCh37	6	33286533	33286533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			356	159	423	0	ENST00000374542.5:c.2210C>T	p.Ser737Leu	p.S737L	ENST00000374542	NM_001141970.1	737	tCa/tTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8375970	8375970	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			179	91	332	0	ENST00000356435.5:c.4627C>G	p.Pro1543Ala	p.P1543A	ENST00000356435		1543	Cct/Gct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0046474-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			107	45	359	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604819	48604826	+	frameshift_variant	Frame_Shift_Del	DEL	CCCACAAC	CCCACAAC	-			P-0046474-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			76	35	297	0	ENST00000342988.3:c.1642_1649del	p.Pro548PhefsTer26	p.P548Ffs*26	ENST00000342988	NM_005359.5	547	gaCCCACAACct/gact																																																																															
TP53	7157	MSKCC	GRCh37	17	7573980	7573980	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046474-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			61	67	675	0	ENST00000269305.4:c.1047del	p.Glu349AspfsTer21	p.E349Dfs*21	ENST00000269305	NM_001126112.2	349	gaA/ga																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8075368	8075368	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0046474-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			78	32	209	0	ENST00000377482.5:c.202G>C	p.Gly68Arg	p.G68R	ENST00000377482	NM_018948.3	68	Ggg/Cgg																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0046678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	36	206	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0046678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	166	372	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577068	7577068	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	343	819	0	ENST00000269305.4:c.870del	p.Lys291ArgfsTer54	p.K291Rfs*54	ENST00000269305	NM_001126112.2	290	cgC/cg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180041137	180041137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	176	974	0	ENST00000261937.6:c.3262G>A	p.Asp1088Asn	p.D1088N	ENST00000261937	NM_182925.4	1088	Gac/Aac																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38184274	38184274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	29	432	1	ENST00000317025.8:c.1682C>T	p.Ser561Phe	p.S561F	ENST00000317025	NM_023034.1	561	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0046695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	116	519	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
ATR	545	MSKCC	GRCh37	3	142275378	142275379	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0046695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	39	257	0	ENST00000350721.4:c.1924_1925del	p.Leu642ValfsTer8	p.L642Vfs*8	ENST00000350721	NM_001184.3	642	CTg/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	20	391	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67662320	67662320	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	46	467	0	ENST00000264010.4:c.1567del	p.Tyr523ThrfsTer61	p.Y523Tfs*61	ENST00000264010	NM_006565.3	522	ccT/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0046697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	37	701	2	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843514	156843514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137994522		P-0046697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	38	809	0	ENST00000524377.1:c.940C>T	p.Arg314Cys	p.R314C	ENST00000524377	NM_002529.3	314	Cgc/Tgc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348165	348253	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GAAGTGGTGCCAAGCGGGGGCGGGAGGCAGCTTGTGACACGGCCCTGGGGGCCCTGACGATGGATCGCCGTCCTCACCTTCCTCCTCCT	GAAGTGGTGCCAAGCGGGGGCGGGAGGCAGCTTGTGACACGGCCCTGGGGGCCCTGACGATGGATCGCCGTCCTCACCTTCCTCCTCCT	-			P-0046697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	42	1064	0	ENST00000262320.3:c.1255-2_1341del		p.X419_splice	ENST00000262320	NM_003502.3	419																																																																																
RNF43	54894	MSKCC	GRCh37	17	56440963	56440963	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0046697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	75	578	0	ENST00000407977.2:c.376-2A>G		p.X126_splice	ENST00000407977		126																																																																																
MSH2	4436	MSKCC	GRCh37	2	47703631	47703631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	119	434	1	ENST00000233146.2:c.2131C>T	p.Arg711Ter	p.R711*	ENST00000233146	NM_000251.2	711	Cga/Tga																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366162	15366162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	140	576	2	ENST00000263377.2:c.1993C>T	p.Arg665Cys	p.R665C	ENST00000263377	NM_058243.2	665	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	75	353	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	26	272	2	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	50	325	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	19	413	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	159	684	4	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	289	795	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256768	19256769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1202792889		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	64	714	1	ENST00000162023.5:c.944dup	p.Val316SerfsTer6	p.V316Sfs*6	ENST00000162023		315	cca/ccCa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	81	490	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	71	701	2	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	127	820	6	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429977	78429978	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	71	299	0	ENST00000370768.2:c.901dup	p.Ile301AsnfsTer4	p.I301Nfs*4	ENST00000370768	NM_003902.3	301	ata/aAta																																																																															
WT1	7490	MSKCC	GRCh37	11	32417886	32417886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	35	478	3	ENST00000332351.3:c.1166G>A	p.Arg389His	p.R389H	ENST00000332351	NM_024426.4	389	cGc/cAc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	58	261	0	ENST00000342505.4:c.1016delA	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663267	227663267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	105	613	0	ENST00000305123.5:c.188C>T	p.Ser63Leu	p.S63L	ENST00000305123	NM_005544.2	63	tCg/tTg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533905	63533905	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	106	534	0	ENST00000307078.5:c.1249delG	p.Ala417ArgfsTer41	p.A417Rfs*41	ENST00000307078	NM_004655.3	417	Gcg/cg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	27	300	2	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	28	199	1	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	49	926	5	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	148	672	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	50	782	6	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61724120	61724120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	76	264	0	ENST00000401558.2:c.782G>A	p.Arg261Gln	p.R261Q	ENST00000401558	NM_003400.3	261	cGa/cAa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	153	836	1	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204842	128204842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	47	823	4	ENST00000341105.2:c.599del	p.Gly200ValfsTer18	p.G200Vfs*18	ENST00000341105	NM_032638.4	200	gGt/gt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629339	187629339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202126944		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	159	650	3	ENST00000441802.2:c.1643G>A	p.Arg548His	p.R548H	ENST00000441802	NM_005245.3	548	cGc/cAc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	54	823	6	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	29	328	0	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	152	768	6	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	57	351	1	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	130	280	4	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																															
PARK2	5071	MSKCC	GRCh37	6	161771163	161771163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	156	699	0	ENST00000366898.1:c.1366G>A	p.Val456Ile	p.V456I	ENST00000366898	NM_004562.2	456	Gtc/Atc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	114	407	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166770	32166770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	78	854	0	ENST00000375023.3:c.4468C>T	p.Arg1490Trp	p.R1490W	ENST00000375023	NM_004557.3	1490	Cgg/Tgg																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519545	137519545	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56403507		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	82	340	0	ENST00000367739.4:c.1093G>A	p.Val365Met	p.V365M	ENST00000367739	NM_000416.2	365	Gtg/Atg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736334	243736334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	99	288	0	ENST00000263826.5:c.713C>T	p.Ser238Leu	p.S238L	ENST00000263826	NM_005465.4	238	tCg/tTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	120	475	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934243	49934243	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1407832113		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	141	737	5	ENST00000296474.3:c.2264del	p.Gly755ValfsTer19	p.G755Vfs*19	ENST00000296474	NM_002447.2	755	gGt/gt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703538	47703538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63749932		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	92	469	1	ENST00000233146.2:c.2038C>T	p.Arg680Ter	p.R680*	ENST00000233146	NM_000251.2	680	Cga/Tga																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39629562	39629562	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	25	238	0	ENST00000262039.4:c.2260del	p.Thr754GlnfsTer7	p.T754Qfs*7	ENST00000262039	NM_002647.2	752	acA/ac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276860	15276861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs753725730		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	134	679	2	ENST00000263388.2:c.5404dup	p.Ala1802GlyfsTer8	p.A1802Gfs*8	ENST00000263388	NM_000435.2	1802	gct/gGct																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161939	47161939	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	66	260	0	ENST00000409792.3:c.4187del	p.Asn1396MetfsTer16	p.N1396Mfs*16	ENST00000409792	NM_014159.6	1396	aAt/at																																																																															
CD276	80381	MSKCC	GRCh37	15	73996146	73996146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	52	1016	0	ENST00000318443.5:c.880G>A	p.Val294Met	p.V294M	ENST00000318443	NM_001024736.1	294	Gtg/Atg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47084145	47084146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	103	466	0	ENST00000409792.3:c.7143dupC	p.Ser2382LeufsTer47	p.S2382Lfs*47	ENST00000409792	NM_014159.6	2381	-/C																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291860	15291860	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146214060		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	191	1089	2	ENST00000263388.2:c.2906G>A	p.Arg969Gln	p.R969Q	ENST00000263388	NM_000435.2	969	cGg/cAg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066648	94066648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	50	455	1	ENST00000369303.4:c.1111C>T	p.Arg371Trp	p.R371W	ENST00000369303	NM_004440.3	371	Cgg/Tgg																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981721	101981721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	52	240	2	ENST00000282441.5:c.147del	p.Ala50ProfsTer24	p.A50Pfs*24	ENST00000282441	NM_001130145.2	48	Ccc/cc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	498235	498235	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	59	289	0	ENST00000399788.2:c.23del	p.Gly8AlafsTer58	p.G8Afs*58	ENST00000399788	NM_001042603.1	8	gGc/gc																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656840	45656840	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	46	619	7	ENST00000407780.3:c.316del	p.Gln106ArgfsTer11	p.Q106Rfs*11	ENST00000407780	NM_001283052.1	106	Cag/ag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211580	98211580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	117	654	0	ENST00000331920.6:c.3575G>A	p.Arg1192His	p.R1192H	ENST00000331920	NM_000264.3	1192	cGc/cAc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	102	896	0	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40497641	40497641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	186	500	0	ENST00000264657.5:c.308G>A	p.Arg103Gln	p.R103Q	ENST00000264657	NM_139276.2	103	cGg/cAg																																																																															
CIC	23152	MSKCC	GRCh37	19	42795066	42795066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	219	996	0	ENST00000575354.2:c.2146C>T	p.Arg716Trp	p.R716W	ENST00000575354	NM_015125.3	716	Cgg/Tgg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38282214	38282214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	112	651	0	ENST00000425967.3:c.842G>A	p.Arg281Gln	p.R281Q	ENST00000425967	NM_001174067.1	281	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	176	1017	0	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	238	917	2	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444986	49444987	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	57	641	0	ENST00000301067.7:c.2479dup	p.Gln827ProfsTer3	p.Q827Pfs*3	ENST00000301067	NM_003482.3	827	caa/cCaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	204	941	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798105	32798105	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	90	801	0	ENST00000374899.4:c.1574delG	p.Gly525AspfsTer36	p.G525Dfs*36	ENST00000374899	NM_018833.2	525	gGa/ga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11303222	11303222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	128	545	1	ENST00000361445.4:c.1361G>A	p.Arg454His	p.R454H	ENST00000361445	NM_004958.3	454	cGc/cAc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639204	3639204	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	158	817	0	ENST00000294008.3:c.4435C>T	p.Arg1479Ter	p.R1479*	ENST00000294008	NM_032444.2	1479	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49415639	49415639	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	33	356	0	ENST00000301067.7:c.16538A>G	p.Gln5513Arg	p.Q5513R	ENST00000301067	NM_003482.3	5513	cAg/cGg																																																																															
APC	324	MSKCC	GRCh37	5	112174604	112174604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	74	322	0	ENST00000257430.4:c.3313C>T	p.Arg1105Trp	p.R1105W	ENST00000257430	NM_000038.5	1105	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434990	49434990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	125	631	0	ENST00000301067.7:c.6563G>A	p.Arg2188His	p.R2188H	ENST00000301067	NM_003482.3	2188	cGc/cAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862737	9862737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	124	515	0	ENST00000330684.3:c.2566C>T	p.Arg856Trp	p.R856W	ENST00000330684	NM_001134407.1	856	Cgg/Tgg																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281668	49281668	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201815757		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	139	685	1	ENST00000282018.3:c.715C>T	p.Arg239Trp	p.R239W	ENST00000282018	NM_020377.2	239	Cgg/Tgg																																																																															
POLE	5426	MSKCC	GRCh37	12	133256789	133256789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	92	350	0	ENST00000320574.5:c.305C>T	p.Pro102Leu	p.P102L	ENST00000320574	NM_006231.2	102	cCg/cTg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741528	17741528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	88	432	1	ENST00000250003.3:c.199G>A	p.Ala67Thr	p.A67T	ENST00000250003	NM_002478.4	67	Gcg/Acg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098009	178098009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	81	287	0	ENST00000397062.3:c.371C>T	p.Ala124Val	p.A124V	ENST00000397062	NM_006164.4	124	gCg/gTg																																																																															
STK40	83931	MSKCC	GRCh37	1	36823877	36823877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	59	413	0	ENST00000373129.3:c.305C>T	p.Thr102Met	p.T102M	ENST00000373129	NM_032017.1	102	aCg/aTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919865	50919866	+	splice_acceptor_variant	Splice_Site	INS	-	-	G	rs756872503		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	89	948	4	ENST00000440232.2:c.2959dup		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
SETD2	29072	MSKCC	GRCh37	3	47163784	47163784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	79	330	0	ENST00000409792.3:c.2342C>T	p.Thr781Met	p.T781M	ENST00000409792	NM_014159.6	781	aCg/aTg																																																																															
AKT1	207	MSKCC	GRCh37	14	105236688	105236688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	169	715	0	ENST00000349310.3:c.1433G>A	p.Gly478Asp	p.G478D	ENST00000349310	NM_001014432.1	478	gGc/gAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255248	16255248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	21	341	0	ENST00000375759.3:c.2513C>T	p.Thr838Met	p.T838M	ENST00000375759	NM_015001.2	838	aCg/aTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376554	118376554	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201447376		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	79	306	0	ENST00000534358.1:c.9947C>T	p.Ala3316Val	p.A3316V	ENST00000534358	NM_005933.3	3316	gCg/gTg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738112	145738112	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	50	954	0	ENST00000428558.2:c.2798A>G	p.His933Arg	p.H933R	ENST00000428558	NM_004260.3	933	cAc/cGc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94219145	94219145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	96	332	0	ENST00000323929.3:c.259C>T	p.Arg87Trp	p.R87W	ENST00000323929	NM_005591.3	87	Cgg/Tgg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662085	227662085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	141	737	0	ENST00000305123.5:c.1370G>A	p.Arg457His	p.R457H	ENST00000305123	NM_005544.2	457	cGc/cAc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53225998	53225998	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	193	541	1	ENST00000375401.3:c.2851C>T	p.Arg951Ter	p.R951*	ENST00000375401	NM_004187.3	951	Cga/Tga																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981407	70981407	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	85	817	1	ENST00000276594.2:c.689delC	p.Pro230GlnfsTer64	p.P230Qfs*64	ENST00000276594	NM_024504.3	230	cCa/ca																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157525018	157525018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	27	283	0	ENST00000346085.5:c.4913G>A	p.Arg1638His	p.R1638H	ENST00000346085	NM_020732.3	1638	cGt/cAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878808	151878808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	24	436	0	ENST00000262189.6:c.6137C>T	p.Pro2046Leu	p.P2046L	ENST00000262189	NM_170606.2	2046	cCa/cTa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43766907	43766907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	35	207	0	ENST00000382044.4:c.1144G>A	p.Val382Ile	p.V382I	ENST00000382044	NM_001141980.1	382	Gtt/Att																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138201244	138201244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	89	411	0	ENST00000237289.4:c.1943C>T	p.Ala648Val	p.A648V	ENST00000237289	NM_001270507.1	648	gCg/gTg																																																																															
INHA	3623	MSKCC	GRCh37	2	220439518	220439518	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs540215120		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	91	790	0	ENST00000243786.2:c.371G>A	p.Arg124His	p.R124H	ENST00000243786	NM_002191.3	124	cGc/cAc																																																																															
ALK	238	MSKCC	GRCh37	2	30143080	30143080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	52	821	0	ENST00000389048.3:c.446C>T	p.Ala149Val	p.A149V	ENST00000389048	NM_004304.4	149	gCg/gTg																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26046027	26046027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	64	284	3	ENST00000540144.1:c.389G>A	p.Arg130His	p.R130H	ENST00000540144	NM_003531.2	130	cGc/cAc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967818	18967818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	204	885	1	ENST00000262803.5:c.1957G>A	p.Gly653Arg	p.G653R	ENST00000262803	NM_002911.3	653	Ggg/Agg																																																																															
STK40	83931	MSKCC	GRCh37	1	36823859	36823859	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	24	363	0	ENST00000373129.3:c.323A>G	p.His108Arg	p.H108R	ENST00000373129	NM_032017.1	108	cAc/cGc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306941	65306941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	104	363	0	ENST00000342505.4:c.2636G>A	p.Arg879His	p.R879H	ENST00000342505	NM_002227.2	879	cGt/cAt																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78414976	78414976	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	86	337	0	ENST00000370768.2:c.1790T>C	p.Val597Ala	p.V597A	ENST00000370768	NM_003902.3	597	gTt/gCt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716166	243716166	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	53	468	0	ENST00000263826.5:c.1028G>T	p.Arg343Met	p.R343M	ENST00000263826	NM_005465.4	343	aGg/aTg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63819032	63819032	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	51	169	1	ENST00000279873.7:c.1083del	p.Lys361AsnfsTer8	p.K361Nfs*8	ENST00000279873	NM_032199.2	360	cAa/ca																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154862	2154862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	125	824	1	ENST00000434045.2:c.359G>A	p.Arg120His	p.R120H	ENST00000434045	NM_001127598.1	120	cGt/cAt																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200097	67200097	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs753125285		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	51	611	0	ENST00000312629.5:c.484C>T	p.Arg162Ter	p.R162*	ENST00000312629	NM_003952.2	162	Cga/Tga																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518577	69518577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	109	438	0	ENST00000294312.3:c.68G>A	p.Arg23His	p.R23H	ENST00000294312	NM_005117.2	23	cGc/cAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948686	71948686	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	40	959	0	ENST00000298229.2:c.3398T>C	p.Val1133Ala	p.V1133A	ENST00000298229	NM_001567.3	1133	gTg/gCg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77051749	77051749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	35	465	0	ENST00000356341.3:c.1058C>T	p.Thr353Ile	p.T353I	ENST00000356341	NM_002576.4	353	aCa/aTa																																																																															
YAP1	10413	MSKCC	GRCh37	11	101984927	101984927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	25	343	0	ENST00000282441.5:c.374C>T	p.Ala125Val	p.A125V	ENST00000282441	NM_001130145.2	125	gCt/gTt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118363776	118363776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	25	273	0	ENST00000534358.1:c.5009C>T	p.Ala1670Val	p.A1670V	ENST00000534358	NM_005933.3	1670	gCc/gTc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18800882	18800882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	25	305	0	ENST00000266497.5:c.4258G>A	p.Val1420Met	p.V1420M	ENST00000266497		1420	Gtg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433770	49433770	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	44	1085	0	ENST00000301067.7:c.7783G>T	p.Gly2595Trp	p.G2595W	ENST00000301067	NM_003482.3	2595	Ggg/Tgg																																																																															
MSI1	4440	MSKCC	GRCh37	12	120794719	120794719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	153	724	0	ENST00000257552.2:c.638G>A	p.Gly213Asp	p.G213D	ENST00000257552	NM_002442.3	213	gGc/gAc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121437125	121437125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	54	870	0	ENST00000257555.6:c.1556C>T	p.Pro519Leu	p.P519L	ENST00000257555		519	cCg/cTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133253975	133253975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	106	474	0	ENST00000320574.5:c.775C>T	p.Arg259Cys	p.R259C	ENST00000320574	NM_006231.2	259	Cgc/Tgc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562400	21562400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	142	717	1	ENST00000382592.4:c.1519G>A	p.Gly507Arg	p.G507R	ENST00000382592	NM_014572.2	507	Gga/Aga																																																																															
LATS2	26524	MSKCC	GRCh37	13	21565452	21565452	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	44	734	0	ENST00000382592.4:c.434G>T	p.Arg145Met	p.R145M	ENST00000382592	NM_014572.2	145	aGg/aTg																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872007	35872008	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	33	464	0	ENST00000216797.5:c.605dup	p.Leu202PhefsTer7	p.L202Ffs*7	ENST00000216797	NM_020529.2	202	ttg/ttTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570340	95570341	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	76	271	0	ENST00000343455.3:c.3392dup	p.Asn1131LysfsTer8	p.N1131Kfs*8	ENST00000343455	NM_177438.2	1131	aat/aaAt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222372	2222372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	133	853	1	ENST00000326181.6:c.656G>A	p.Arg219Gln	p.R219Q	ENST00000326181	NM_032271.2	219	cGg/cAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993380	72993380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	204	843	1	ENST00000268489.5:c.665C>T	p.Ala222Val	p.A222V	ENST00000268489	NM_006885.3	222	gCg/gTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37873588	37873588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	140	794	0	ENST00000269571.5:c.1753G>A	p.Val585Met	p.V585M	ENST00000269571		585	Gtg/Atg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78858898	78858898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	156	815	0	ENST00000306801.3:c.1933G>A	p.Ala645Thr	p.A645T	ENST00000306801	NM_020761.2	645	Gcc/Acc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220342	5220342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	133	575	0	ENST00000357368.4:c.3478C>T	p.Pro1160Ser	p.P1160S	ENST00000357368	NM_002850.3	1160	Cca/Tca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291542	15291542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	99	851	0	ENST00000263388.2:c.3092G>A	p.Arg1031His	p.R1031H	ENST00000263388	NM_000435.2	1031	cGc/cAc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279573	18279573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	39	633	1	ENST00000222254.8:c.1846C>T	p.His616Tyr	p.H616Y	ENST00000222254	NM_005027.3	616	Cac/Tac																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965716	18965716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	44	822	2	ENST00000262803.5:c.1294G>A	p.Val432Met	p.V432M	ENST00000262803	NM_002911.3	432	Gtg/Atg																																																																															
AXL	558	MSKCC	GRCh37	19	41736952	41736952	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	139	741	0	ENST00000301178.4:c.667G>T	p.Val223Leu	p.V223L	ENST00000301178	NM_021913.4	223	Gtg/Ttg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45860596	45860596	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	175	896	2	ENST00000391945.4:c.1411C>A	p.Leu471Met	p.L471M	ENST00000391945	NM_000400.3	471	Ctg/Atg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213254	39213254	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	51	651	0	ENST00000402219.2:c.3713T>G	p.Leu1238Trp	p.L1238W	ENST00000402219	NM_005633.3	1238	tTg/tGg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198257170	198257170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	46	273	0	ENST00000335508.6:c.3772G>T	p.Ala1258Ser	p.A1258S	ENST00000335508	NM_012433.2	1258	Gcc/Tcc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31394066	31394066	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	22	373	0	ENST00000328111.2:c.2353A>G	p.Lys785Glu	p.K785E	ENST00000328111	NM_006892.3	785	Aaa/Gaa																																																																															
SRC	6714	MSKCC	GRCh37	20	36012608	36012608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	39	406	2	ENST00000358208.4:c.52C>A	p.Leu18Met	p.L18M	ENST00000358208		18	Ctg/Atg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171690	36171690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	35	397	0	ENST00000300305.3:c.875C>T	p.Ala292Val	p.A292V	ENST00000300305		292	gCc/gTc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72873612	72873613	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	106	307	0	ENST00000325599.8:c.689dup	p.Leu230PhefsTer18	p.L230Ffs*18	ENST00000325599	NM_018130.2	230	ttg/ttTg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664793	138664793	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	15	252	0	ENST00000330315.3:c.772T>C	p.Tyr258His	p.Y258H	ENST00000330315	NM_023067.3	258	Tac/Cac																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808312	1808312	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	171	1098	0	ENST00000260795.2:c.2075del	p.Gly692AlafsTer16	p.G692Afs*16	ENST00000260795		690	ctG/ct																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1956917	1956917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	64	648	0	ENST00000382891.5:c.2368G>A	p.Val790Ile	p.V790I	ENST00000382891	NM_133335.3	790	Gtt/Att																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230822	66230822	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	63	274	0	ENST00000273854.3:c.2149C>A	p.Gln717Lys	p.Q717K	ENST00000273854	NM_004439.5	717	Caa/Aaa																																																																															
TET2	54790	MSKCC	GRCh37	4	106155661	106155661	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	67	299	0	ENST00000380013.4:c.565del	p.Ser189ValfsTer18	p.S189Vfs*18	ENST00000380013	NM_001127208.2	188	Aaa/aa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168708	56168708	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	93	304	0	ENST00000399503.3:c.1562A>G	p.Gln521Arg	p.Q521R	ENST00000399503	NM_005921.1	521	cAa/cGa																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158431	26158433	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	96	759	0	ENST00000289316.2:c.37_39del	p.Lys13del	p.K13del	ENST00000289316	NM_138720.2	12	AAG/-																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671990	30671990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	158	702	0	ENST00000376406.3:c.4970C>T	p.Ala1657Val	p.A1657V	ENST00000376406	NM_014641.2	1657	gCc/gTc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673764	30673764	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	35	471	0	ENST00000376406.3:c.3196del	p.Leu1066PhefsTer50	p.L1066Ffs*50	ENST00000376406	NM_014641.2	1066	Ctt/tt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324067	31324068	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	23	220	0	ENST00000412585.2:c.495_496del	p.Gln165HisfsTer11	p.Q165Hfs*11	ENST00000412585	NM_005514.6	165	caGAtc/catc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170022	32170022	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	191	978	1	ENST00000375023.3:c.3586G>T	p.Gly1196Ter	p.G1196*	ENST00000375023	NM_004557.3	1196	Gga/Tga																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797253	32797253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	72	866	0	ENST00000374899.4:c.1856G>A	p.Arg619Gln	p.R619Q	ENST00000374899	NM_018833.2	619	cGg/cAg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805362	32805363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	57	477	0	ENST00000374899.4:c.559dup	p.His187ProfsTer59	p.H187Pfs*59	ENST00000374899	NM_018833.2	187	cat/cCat																																																																															
ROS1	6098	MSKCC	GRCh37	6	117631434	117631434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	24	247	0	ENST00000368508.3:c.6244G>A	p.Ala2082Thr	p.A2082T	ENST00000368508	NM_002944.2	2082	Gct/Act																																																																															
ROS1	6098	MSKCC	GRCh37	6	117709118	117709118	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	99	398	0	ENST00000368508.3:c.1839A>C	p.Lys613Asn	p.K613N	ENST00000368508	NM_002944.2	613	aaA/aaC																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527832	157527832	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183921218		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	74	373	0	ENST00000346085.5:c.5557G>A	p.Ala1853Thr	p.A1853T	ENST00000346085	NM_020732.3	1853	Gca/Aca																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468188	50468188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	52	690	0	ENST00000331340.3:c.1423G>A	p.Val475Ile	p.V475I	ENST00000331340	NM_006060.4	475	Gtc/Atc																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194648	29194648	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	169	921	2	ENST00000240100.2:c.1080del	p.Thr361ProfsTer62	p.T361Pfs*62	ENST00000240100	NM_001394.6	360	ccC/cc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371944	55371944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	119	352	1	ENST00000297316.4:c.634C>T	p.Pro212Ser	p.P212S	ENST00000297316	NM_022454.3	212	Cct/Tct																																																																															
TEK	7010	MSKCC	GRCh37	9	27190607	27190607	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	128	536	0	ENST00000380036.4:c.1408T>C	p.Tyr470His	p.Y470H	ENST00000380036	NM_000459.3	470	Tac/Cac																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570376	87570376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	128	879	0	ENST00000277120.3:c.2116G>A	p.Val706Met	p.V706M	ENST00000277120		706	Gtg/Atg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231256	98231256	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	60	711	0	ENST00000331920.6:c.2027A>G	p.Tyr676Cys	p.Y676C	ENST00000331920	NM_000264.3	676	tAc/tGc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931873	39931873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	155	358	0	ENST00000378444.4:c.2726G>A	p.Gly909Asp	p.G909D	ENST00000378444	NM_001123385.1	909	gGc/gAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931963	39931964	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	162	397	0	ENST00000378444.4:c.2635dup	p.Ser879LysfsTer38	p.S879Kfs*38	ENST00000378444	NM_001123385.1	879	agc/aAgc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53225904	53225904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	164	488	0	ENST00000375401.3:c.2945G>A	p.Arg982His	p.R982H	ENST00000375401	NM_004187.3	982	cGc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70360637	70360637	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	11	159	0	ENST00000374080.3:c.6197A>G	p.Gln2066Arg	p.Q2066R	ENST00000374080		2066	cAg/cGg																																																																															
ATRX	546	MSKCC	GRCh37	X	76855036	76855036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	18	183	0	ENST00000373344.5:c.5800G>A	p.Gly1934Arg	p.G1934R	ENST00000373344	NM_000489.3	1934	Ggg/Agg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61710094	61710094	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	22	182	2	ENST00000401558.2:c.2810C>A	p.Ala937Asp	p.A937D	ENST00000401558	NM_003400.3	937	gCt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	60	364	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0046711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	59	413	1	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604785	48604785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	74	312	0	ENST00000342988.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000342988	NM_005359.5	536	cTa/cCa																																																																															
APC	324	MSKCC	GRCh37	5	112174559	112174559	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	58	326	0	ENST00000257430.4:c.3268C>T	p.Gln1090Ter	p.Q1090*	ENST00000257430	NM_000038.5	1090	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175416	112175417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	36	244	0	ENST00000257430.4:c.4126dup	p.Tyr1376LeufsTer10	p.Y1376Lfs*10	ENST00000257430	NM_000038.5	1375	-/T																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931682	39931682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	74	330	0	ENST00000378444.4:c.2917G>A	p.Val973Met	p.V973M	ENST00000378444	NM_001123385.1	973	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	125	329	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	178	283	0				ENST00000310581	NM_198253.2																																																																																	
GATA2	2624	MSKCC	GRCh37	3	128205124	128205124	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	77	741	0	ENST00000341105.2:c.317C>G	p.Ser106Cys	p.S106C	ENST00000341105	NM_032638.4	106	tCt/tGt																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45799243	45799243	+	intron_variant	Intron	SNP	C	C	T			P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	99	423	0	ENST00000372115.3:c.158-10G>A		p.*53*	ENST00000372115	NM_001048171.1																																																																																	
NOTCH4	4855	MSKCC	GRCh37	6	32166824	32166824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1201	136	726	0	ENST00000375023.3:c.4414C>T	p.Arg1472Trp	p.R1472W	ENST00000375023	NM_004557.3	1472	Cgg/Tgg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11193215	11193215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	127	502	0	ENST00000361445.4:c.5286G>T	p.Gln1762His	p.Q1762H	ENST00000361445	NM_004958.3	1762	caG/caT																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733512	85733512	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	33	345	0	ENST00000370580.1:c.500C>G	p.Ser167Cys	p.S167C	ENST00000370580	NM_003921.4	167	tCt/tGt																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17384925	17384925	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1160	68	711	0	ENST00000359435.4:c.475C>G	p.Leu159Val	p.L159V	ENST00000359435	NM_001033549.1	159	Ctg/Gtg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210947	36210948	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1218	165	877	3	ENST00000222270.7:c.698_699delinsTT	p.Arg233Ile	p.R233I	ENST00000222270	NM_014727.1	233	aGG/aTT																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965393	25965393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	111	527	0	ENST00000435504.4:c.3813G>T	p.Lys1271Asn	p.K1271N	ENST00000435504		1271	aaG/aaT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518255	187518255	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	70	295	0	ENST00000441802.2:c.12439G>C	p.Gly4147Arg	p.G4147R	ENST00000441802	NM_005245.3	4147	Ggc/Cgc																																																																															
TERT	7015	MSKCC	GRCh37	5	1268654	1268654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1326	169	775	0	ENST00000310581.5:c.2563G>T	p.Ala855Ser	p.A855S	ENST00000310581	NM_198253.2	855	Gcg/Tcg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047907	180047907	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	217	938	0	ENST00000261937.6:c.2268C>G	p.Cys756Trp	p.C756W	ENST00000261937	NM_182925.4	756	tgC/tgG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	30	708	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	72	307	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	80	420	2	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986893	36986893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	170	442	0	ENST00000354822.5:c.796G>A	p.Gly266Ser	p.G266S	ENST00000354822	NM_001079668.2	266	Ggc/Agc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	350	756	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866439	42866439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61735791		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	211	900	1	ENST00000398585.3:c.193G>A	p.Ala65Thr	p.A65T	ENST00000398585	NM_001135099.1	65	Gca/Aca																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370903	55370903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	174	723	0	ENST00000297316.4:c.205C>T	p.Arg69Trp	p.R69W	ENST00000297316	NM_022454.3	69	Cgg/Tgg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103755	47103756	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	111	427	2	ENST00000409792.3:c.6190_6191delGA	p.Asp2064ProfsTer8	p.D2064Pfs*8	ENST00000409792	NM_014159.6	2064	GAc/c																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789591	3789591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	29	377	0	ENST00000262367.5:c.4268delC	p.Pro1423LeufsTer36	p.P1423Lfs*36	ENST00000262367	NM_004380.2	1423	cCt/ct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	64	314	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	225	942	1	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	175	810	1	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	79	422	3	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	185	857	12	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	78	835	0	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	136	454	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	85	264	2	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	163	333	2	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933593	39933594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	138	336	0	ENST00000378444.4:c.1005dup	p.Ser336LeufsTer45	p.S336Lfs*45	ENST00000378444	NM_001123385.1	335	-/C																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166916	32166916	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	142	863	1	ENST00000375023.3:c.4322del	p.Pro1441LeufsTer17	p.P1441Lfs*17	ENST00000375023	NM_004557.3	1441	cCt/ct																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	77	307	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																															
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	107	475	0	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																															
ARAF	369	MSKCC	GRCh37	X	47428247	47428247	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	176	382	0	ENST00000377045.4:c.1207A>G	p.Met403Val	p.M403V	ENST00000377045	NM_001654.4	403	Atg/Gtg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148511172	148511172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	46	529	0	ENST00000320356.2:c.1730C>T	p.Pro577Leu	p.P577L	ENST00000320356	NM_004456.4	577	cCg/cTg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998756	100998756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	206	749	0	ENST00000325455.5:c.1046C>T	p.Ser349Leu	p.S349L	ENST00000325455	NM_001202474.3	349	tCg/tTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100999	41100999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	117	652	4	ENST00000373198.4:c.1357C>T	p.Arg453Cys	p.R453C	ENST00000373198	NM_133170.3	453	Cgc/Tgc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47084145	47084146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	89	432	0	ENST00000409792.3:c.7143dupC	p.Ser2382LeufsTer47	p.S2382Lfs*47	ENST00000409792	NM_014159.6	2381	-/C																																																																															
PGR	5241	MSKCC	GRCh37	11	100998627	100998629	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	124	675	1	ENST00000325455.5:c.1173_1175del	p.Glu392del	p.E392del	ENST00000325455	NM_001202474.3	391	gaGGAa/gaa																																																																															
SDHB	6390	MSKCC	GRCh37	1	17350503	17350503	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201517260		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	120	574	1	ENST00000375499.3:c.607G>A	p.Gly203Arg	p.G203R	ENST00000375499	NM_003000.2	203	Gga/Aga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340450	8340450	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200354236		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	83	427	0	ENST00000356435.5:c.5146G>A	p.Ala1716Thr	p.A1716T	ENST00000356435		1716	Gct/Act																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025596	1025596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	172	784	0	ENST00000358495.3:c.779G>A	p.Arg260Gln	p.R260Q	ENST00000358495	NM_134424.2	260	cGg/cAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152104	11152104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	136	519	0	ENST00000344626.4:c.4292G>A	p.Arg1431His	p.R1431H	ENST00000344626	NM_003072.3	1431	cGc/cAc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	166	468	0	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209457	98209457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	148	868	0	ENST00000331920.6:c.4081G>A	p.Val1361Met	p.V1361M	ENST00000331920	NM_000264.3	1361	Gtg/Atg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	162	852	2	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231585	5231585	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779378586		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	100	397	1	ENST00000357368.4:c.1891C>T	p.Arg631Cys	p.R631C	ENST00000357368	NM_002850.3	631	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	180	922	1	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906370	50906370	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	87	925	9	ENST00000440232.2:c.1036del	p.Glu346SerfsTer47	p.E346Sfs*47	ENST00000440232	NM_002691.3	344	tGg/tg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC	rs1361078163		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	29	383	0	ENST00000234420.5:c.3260_3261dup	p.Phe1088ProfsTer3	p.F1088Pfs*3	ENST00000234420	NM_000179.2	1085	acc/aCCcc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798105	32798105	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	97	779	0	ENST00000374899.4:c.1574delG	p.Gly525AspfsTer36	p.G525Dfs*36	ENST00000374899	NM_018833.2	525	gGa/ga																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798511	32798511	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	62	680	0	ENST00000374899.4:c.1345C>T	p.Arg449Ter	p.R449*	ENST00000374899	NM_018833.2	449	Cga/Tga																																																																															
NUP93	9688	MSKCC	GRCh37	16	56878487	56878487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	117	381	0	ENST00000308159.5:c.2426C>T	p.Ala809Val	p.A809V	ENST00000308159	NM_014669.4	809	gCg/gTg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998256	100998256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	89	362	0	ENST00000325455.5:c.1546G>A	p.Gly516Ser	p.G516S	ENST00000325455	NM_001202474.3	516	Ggc/Agc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149465987	149465987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	224	922	1	ENST00000286301.3:c.4G>A	p.Gly2Ser	p.G2S	ENST00000286301	NM_005211.3	2	Ggc/Agc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376248	15376248	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	56	396	2	ENST00000263377.2:c.766delC	p.Gln256SerfsTer27	p.Q256Sfs*27	ENST00000263377	NM_058243.2	256	Cag/ag																																																																															
YES1	7525	MSKCC	GRCh37	18	756628	756628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	133	439	0	ENST00000314574.4:c.200G>T	p.Gly67Val	p.G67V	ENST00000314574	NM_005433.3	67	gGg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817720	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	81	335	2	ENST00000262367.5:c.3250dupA	p.Ile1084AsnfsTer3	p.I1084Nfs*3	ENST00000262367	NM_004380.2	1084	atc/aAtc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372202	55372202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	144	539	3	ENST00000297316.4:c.892G>A	p.Gly298Ser	p.G298S	ENST00000297316	NM_022454.3	298	Ggc/Agc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25462047	25462047	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1202038704		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	41	541	1	ENST00000264709.3:c.2360C>T	p.Ala787Val	p.A787V	ENST00000264709	NM_175629.2	787	gCt/gTt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741678	17741678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	181	500	0	ENST00000250003.3:c.349C>T	p.Arg117Cys	p.R117C	ENST00000250003	NM_002478.4	117	Cgc/Tgc																																																																															
INSR	3643	MSKCC	GRCh37	19	7117191	7117191	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	176	712	4	ENST00000302850.5:c.4025del	p.Gly1342AlafsTer23	p.G1342Afs*23	ENST00000302850	NM_000208.2	1342	gGc/gc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214710	36214710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	37	708	0	ENST00000222270.7:c.3136C>T	p.Arg1046Cys	p.R1046C	ENST00000222270	NM_014727.1	1046	Cgc/Tgc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294907	1294907	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	29	105	0	ENST00000310581.5:c.198del	p.Ala67ProfsTer11	p.A67Pfs*11	ENST00000310581	NM_198253.2	66	ccC/cc																																																																															
CASP8	841	MSKCC	GRCh37	2	202150042	202150042	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	223	487	0	ENST00000358485.4:c.1481+2T>C		p.X494_splice	ENST00000358485	NM_001080125.1	494																																																																																
CSF3R	1441	MSKCC	GRCh37	1	36941110	36941110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	112	684	0	ENST00000361632.4:c.229C>T	p.Arg77Cys	p.R77C	ENST00000361632		77	Cgt/Tgt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156830746	156830746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	36	156	0	ENST00000524377.1:c.20G>A	p.Arg7His	p.R7H	ENST00000524377	NM_002529.3	7	cGc/cAc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64126849	64126849	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	104	783	1	ENST00000334205.4:c.56-1G>A		p.X19_splice	ENST00000334205	NM_003942.2	19																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71946922	71946922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	175	797	0	ENST00000298229.2:c.2771C>T	p.Ala924Val	p.A924V	ENST00000298229	NM_001567.3	924	gCc/gTc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195818	102195818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	38	337	0	ENST00000263464.3:c.578G>A	p.Gly193Asp	p.G193D	ENST00000263464	NM_001165.4	193	gGc/gAc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	432290	432290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	120	526	0	ENST00000399788.2:c.2233C>T	p.Arg745Cys	p.R745C	ENST00000399788	NM_001042603.1	745	Cgt/Tgt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988412	36988412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	140	427	1	ENST00000354822.5:c.241G>A	p.Ala81Thr	p.A81T	ENST00000354822	NM_001079668.2	81	Gcg/Acg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36989269	36989269	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	169	727	0	ENST00000354822.5:c.66del	p.Gly23AlafsTer11	p.G23Afs*11	ENST00000354822	NM_001079668.2	22	ccC/cc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43714236	43714237	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	186	764	0	ENST00000382044.4:c.3916dup	p.Asp1306GlyfsTer64	p.D1306Gfs*64	ENST00000382044	NM_001141980.1	1306	gat/gGat																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639594	3639594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	181	955	0	ENST00000294008.3:c.4045G>A	p.Gly1349Arg	p.G1349R	ENST00000294008	NM_032444.2	1349	Ggg/Agg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3644494	3644494	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	180	785	0	ENST00000294008.3:c.2120A>G	p.Lys707Arg	p.K707R	ENST00000294008	NM_032444.2	707	aAg/aGg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58734125	58734125	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	75	535	0	ENST00000305921.3:c.1183C>A	p.Leu395Met	p.L395M	ENST00000305921	NM_003620.3	395	Ctg/Atg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244460	5244460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	88	877	1	ENST00000357368.4:c.1022C>T	p.Thr341Ile	p.T341I	ENST00000357368	NM_002850.3	341	aCt/aTt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290999	15290999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	208	973	2	ENST00000263388.2:c.3211G>A	p.Val1071Met	p.V1071M	ENST00000263388	NM_000435.2	1071	Gtg/Atg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919715	50919715	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	154	1022	0	ENST00000440232.2:c.2883G>C	p.Gln961His	p.Q961H	ENST00000440232	NM_002691.3	961	caG/caC																																																																															
MSH6	2956	MSKCC	GRCh37	2	48018202	48018202	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	60	530	1	ENST00000234420.5:c.402del	p.Phe134LeufsTer15	p.F134Lfs*15	ENST00000234420	NM_000179.2	133	Ttt/tt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663058	227663058	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	264	562	0	ENST00000305123.5:c.397G>T	p.Gly133Trp	p.G133W	ENST00000305123	NM_005544.2	133	Ggg/Tgg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185181359	185181359	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	18	252	0	ENST00000265026.3:c.1305del	p.Lys435AsnfsTer16	p.K435Nfs*16	ENST00000265026	NM_004721.4	434	Aaa/aa																																																																															
TP63	8626	MSKCC	GRCh37	3	189582135	189582135	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	131	441	1	ENST00000264731.3:c.699del	p.Ala234LeufsTer8	p.A234Lfs*8	ENST00000264731	NM_003722.4	232	Aaa/aa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803235	1803235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	175	836	1	ENST00000260795.2:c.587G>A	p.Arg196His	p.R196H	ENST00000260795		196	cGc/cAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187554941	187554941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	56	368	0	ENST00000441802.2:c.4220G>A	p.Gly1407Glu	p.G1407E	ENST00000441802	NM_005245.3	1407	gGa/gAa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797842	32797842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	67	412	0	ENST00000374899.4:c.1660del	p.Val554CysfsTer7	p.V554Cfs*7	ENST00000374899	NM_018833.2	554	Gtg/tg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117677854	117677854	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	55	258	0	ENST00000368508.3:c.4079T>C	p.Ile1360Thr	p.I1360T	ENST00000368508	NM_002944.2	1360	aTc/aCc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860788	151860788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	94	406	0	ENST00000262189.6:c.9874C>T	p.Pro3292Ser	p.P3292S	ENST00000262189	NM_170606.2	3292	Cca/Tca																																																																															
ATRX	546	MSKCC	GRCh37	X	76938436	76938436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	102	235	0	ENST00000373344.5:c.2312C>T	p.Ala771Val	p.A771V	ENST00000373344	NM_000489.3	771	gCg/gTg																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152864474	152864474	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	17	44	0	ENST00000406277.2:c.52C>A	p.Pro18Thr	p.P18T	ENST00000406277	NM_152274.4	18	Ccg/Acg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0046740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	368	744	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123722	11123722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	354	723	0	ENST00000344626.4:c.2372C>T	p.Ala791Val	p.A791V	ENST00000344626	NM_003072.3	791	gCg/gTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68995569	68995569	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	444	557	0	ENST00000288368.4:c.1973C>A	p.Ser658Ter	p.S658*	ENST00000288368	NM_024870.2	658	tCg/tAg																																																																															
RB1	5925	MSKCC	GRCh37	13	48934152	48934152	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0046740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	131	234	0	ENST00000267163.4:c.610delG		p.X204_splice	ENST00000267163	NM_000321.2	204																																																																																
NEGR1	257194	MSKCC	GRCh37	1	72241906	72241906	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	378	336	0	ENST00000357731.5:c.484G>T	p.Ala162Ser	p.A162S	ENST00000357731	NM_173808.2	162	Gcc/Tcc																																																																															
FH	2271	MSKCC	GRCh37	1	241682999	241683028	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	GAGGAGCCGAAGTGCTCGGTACATGGTGCT	GAGGAGCCGAAGTGCTCGGTACATGGTGCT	-			P-0046740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	104	633	0	ENST00000366560.3:c.-6_24del		p.*2*	ENST00000366560	NM_000143.3																																																																																	
RET	5979	MSKCC	GRCh37	10	43604677	43604677	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0046740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	400	636	0	ENST00000355710.3:c.1262A>T	p.Gln421Leu	p.Q421L	ENST00000355710	NM_020975.4	421	cAg/cTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663186	227663186	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	707	913	0	ENST00000305123.5:c.269A>G	p.Asp90Gly	p.D90G	ENST00000305123	NM_005544.2	90	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0046742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	463	730	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0046742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	15	258	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0046742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	90	263	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0046742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	184	309	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937904	36937904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	217	1005	0	ENST00000361632.4:c.932G>A	p.Arg311His	p.R311H	ENST00000361632		311	cGc/cAc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625219	69625219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	380	960	0	ENST00000334134.2:c.574C>T	p.Arg192Trp	p.R192W	ENST00000334134	NM_005247.2	192	Cgg/Tgg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683654	162684449	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACCCGAGTCAAGCTCTGGGGCTCCCGCTCACAGCCTCCCGCCGCGTTTCTGGGGTCGTCGCCTCCAGTTGCATTCATTTCTTGACCTTTTCTCCACGGTCTCTGCACAATGTGAACAATGCTCTGCTGATCCAGGTCACAATTCTGTTTGGGAGCAAGGTAAAAAAAAAAAAAAAAAAAAAGGAAATGTCAAACATGAAATGCGAGATAGAGTTTAACTTGCCCTCCGTGGTAGAAGGGAAGCAAAAGTGACATGTAACTGACCAACTTAGGTGCTCCTTTGCCCACAGCAGTTACACACTACACACGGTAGACAAACAACACTGAACTGGGGCCAGAAACAGAAATTTGGGAATACGTGAAACACAATAGAATGCTGACGTCATATTCAAAAGGACATAAAATCTAGCAGGAAAAAATAATTACCAAACTGGATCTATAAGCACAGTGAAAACAATAATTCCTTTTTTCCCCCCAAGACAGAGTCTCACTCTGTCATCCAGGCTGGAGTGCAGTGGTGTGATTTCCGCTCATTGCAACCTCTGCCTGCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTATAGGCGGGCACCACCACACCTGGCTACGAAAAATATTCTTAAATAGTAAAACTGATTGACATCAGAATTGATATGTCATTCATCTCTGTTTTACAAAAGTACAGAAAGTGAGTTATTATCAATGAGAGGGCATTTCTTTAAAGCATCGGAAATGAATGCGTTTGAGTAGGCTCCACACACACCGCTCCACGGGCACCA	CACCCGAGTCAAGCTCTGGGGCTCCCGCTCACAGCCTCCCGCCGCGTTTCTGGGGTCGTCGCCTCCAGTTGCATTCATTTCTTGACCTTTTCTCCACGGTCTCTGCACAATGTGAACAATGCTCTGCTGATCCAGGTCACAATTCTGTTTGGGAGCAAGGTAAAAAAAAAAAAAAAAAAAAAGGAAATGTCAAACATGAAATGCGAGATAGAGTTTAACTTGCCCTCCGTGGTAGAAGGGAAGCAAAAGTGACATGTAACTGACCAACTTAGGTGCTCCTTTGCCCACAGCAGTTACACACTACACACGGTAGACAAACAACACTGAACTGGGGCCAGAAACAGAAATTTGGGAATACGTGAAACACAATAGAATGCTGACGTCATATTCAAAAGGACATAAAATCTAGCAGGAAAAAATAATTACCAAACTGGATCTATAAGCACAGTGAAAACAATAATTCCTTTTTTCCCCCCAAGACAGAGTCTCACTCTGTCATCCAGGCTGGAGTGCAGTGGTGTGATTTCCGCTCATTGCAACCTCTGCCTGCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTATAGGCGGGCACCACCACACCTGGCTACGAAAAATATTCTTAAATAGTAAAACTGATTGACATCAGAATTGATATGTCATTCATCTCTGTTTTACAAAAGTACAGAAAGTGAGTTATTATCAATGAGAGGGCATTTCTTTAAAGCATCGGAAATGAATGCGTTTGAGTAGGCTCCACACACACCGCTCCACGGGCACCA	-			P-0046742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	35	577	0	ENST00000366898.1:c.172-652_315del		p.X58_splice	ENST00000366898	NM_004562.2	58																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0045810-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			673	59	426	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579536	7579536	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045810-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			948	128	746	0	ENST00000269305.4:c.151del	p.Glu51AsnfsTer72	p.E51Nfs*72	ENST00000269305	NM_001126112.2	51	Gaa/aa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779860	3779860	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045810-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			958	120	736	0	ENST00000262367.5:c.5188A>T	p.Ile1730Phe	p.I1730F	ENST00000262367	NM_004380.2	1730	Atc/Ttc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	79	350	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	20	287	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	138	299	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	184	783	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64132875	64132875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	228	953	0	ENST00000334205.4:c.1009C>T	p.Arg337Trp	p.R337W	ENST00000334205	NM_003942.2	337	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437575	56437575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	170	623	0	ENST00000407977.2:c.887G>A	p.Arg296His	p.R296H	ENST00000407977		296	cGt/cAt																																																																															
KIT	3815	MSKCC	GRCh37	4	55561764	55561764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	94	371	0	ENST00000288135.5:c.154G>A	p.Asp52Asn	p.D52N	ENST00000288135	NM_000222.2	52	Gac/Aac																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	120	745	12	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
MYC	4609	MSKCC	GRCh37	8	128750945	128750945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	101	545	0	ENST00000377970.2:c.482C>T	p.Ser161Leu	p.S161L	ENST00000377970	NM_002467.4	161	tCa/tTa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681119	117681120	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs748436511		P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	87	440	0	ENST00000368508.3:c.3500dup	p.Leu1167PhefsTer26	p.L1167Ffs*26	ENST00000368508	NM_002944.2	1167	tta/ttTa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341317	89341317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	75	327	0	ENST00000301030.4:c.7618C>T	p.Arg2540Trp	p.R2540W	ENST00000301030	NM_001256183.1	2540	Cgg/Tgg																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15821896	15821896	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	66	255	0	ENST00000307771.7:c.294del	p.Lys98AsnfsTer10	p.K98Nfs*10	ENST00000307771	NM_005089.3	97	Aaa/aa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	174	1058	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	39	380	0	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877347	28877347	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	151	468	0	ENST00000282397.4:c.3974del	p.Pro1325GlnfsTer17	p.P1325Qfs*17	ENST00000282397	NM_002019.4	1325	cCa/ca																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	200	553	4	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048196	180048196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	214	949	0	ENST00000261937.6:c.2077G>A	p.Asp693Asn	p.D693N	ENST00000261937	NM_182925.4	693	Gac/Aac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216184	36216184	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	164	806	3	ENST00000222270.7:c.3596del	p.Gly1199AlafsTer156	p.G1199Afs*156	ENST00000222270	NM_014727.1	1198	Ggg/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440951	56440951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	154	677	2	ENST00000407977.2:c.386C>T	p.Ala129Val	p.A129V	ENST00000407977		129	gCg/gTg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738482	145738482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	104	941	0	ENST00000428558.2:c.2503G>A	p.Asp835Asn	p.D835N	ENST00000428558	NM_004260.3	835	Gac/Aac																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936058	71936058	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	10	33	0	ENST00000298229.2:c.35del	p.Gly12AlafsTer15	p.G12Afs*15	ENST00000298229	NM_001567.3	10	ccG/cc																																																																															
B2M	567	MSKCC	GRCh37	15	45007741	45007744	+	frameshift_variant	Frame_Shift_Del	DEL	GAGA	GAGA	-			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	159	348	0	ENST00000558401.1:c.192_195del	p.Arg65LeufsTer37	p.R65Lfs*37	ENST00000558401	NM_004048.2	63	gGAGAg/gg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554218	63554218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	149	594	0	ENST00000307078.5:c.521C>T	p.Ala174Val	p.A174V	ENST00000307078	NM_004655.3	174	gCg/gTg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78933909	78933909	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1342049284		P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	165	796	1	ENST00000306801.3:c.3509C>T	p.Thr1170Met	p.T1170M	ENST00000306801	NM_020761.2	1170	aCg/aTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76939496	76939496	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	124	558	0	ENST00000373344.5:c.1252C>T	p.Arg418Ter	p.R418*	ENST00000373344	NM_000489.3	418	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437530	56437531	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	196	662	0	ENST00000407977.2:c.931dup	p.Leu311ProfsTer132	p.L311Pfs*132	ENST00000407977		311	ctc/cCtc																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39325173	39325178	+	inframe_deletion	In_Frame_Del	DEL	CCTGCC	CCTGCC	-			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	70	745	0	ENST00000373001.3:c.141_146del	p.Ala48_Gly49del	p.A48_G49del	ENST00000373001	NM_022157.3	47	ggGGCAGGc/ggc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625284	69625284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	205	984	2	ENST00000334134.2:c.509G>A	p.Arg170His	p.R170H	ENST00000334134	NM_005247.2	170	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434903	49434903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	152	911	0	ENST00000301067.7:c.6650G>A	p.Arg2217His	p.R2217H	ENST00000301067	NM_003482.3	2217	cGt/cAt																																																																															
IGF1	3479	MSKCC	GRCh37	12	102869504	102869504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	143	492	0	ENST00000307046.8:c.137C>T	p.Ala46Val	p.A46V	ENST00000307046	NM_001111285.1	46	gCc/gTc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28901621	28901621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	66	354	0	ENST00000282397.4:c.2774G>A	p.Arg925His	p.R925H	ENST00000282397	NM_002019.4	925	cGt/cAt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483923	88483923	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	323	711	0	ENST00000360948.2:c.1647T>A	p.Phe549Leu	p.F549L	ENST00000360948	NM_001012338.2	549	ttT/ttA																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900825	3900825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	137	623	0	ENST00000262367.5:c.271G>A	p.Ala91Thr	p.A91T	ENST00000262367	NM_004380.2	91	Gcc/Acc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78820312	78820312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	53	826	0	ENST00000306801.3:c.1252G>A	p.Val418Met	p.V418M	ENST00000306801	NM_020761.2	418	Gtg/Atg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272291	15272291	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	232	929	0	ENST00000263388.2:c.6148C>A	p.Leu2050Ile	p.L2050I	ENST00000263388	NM_000435.2	2050	Ctc/Atc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945416	17945416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	162	705	1	ENST00000458235.1:c.2314G>A	p.Ala772Thr	p.A772T	ENST00000458235	NM_000215.3	772	Gcc/Acc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955088	17955088	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	244	938	1	ENST00000458235.1:c.139del	p.Asp47ThrfsTer100	p.D47Tfs*100	ENST00000458235	NM_000215.3	47	Gac/ac																																																																															
CIC	23152	MSKCC	GRCh37	19	42794926	42794926	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	176	879	1	ENST00000575354.2:c.2006C>A	p.Ala669Asp	p.A669D	ENST00000575354	NM_015125.3	669	gCc/gAc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803148	1803148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	186	1027	0	ENST00000260795.2:c.500C>T	p.Pro167Leu	p.P167L	ENST00000260795		167	cCg/cTg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749467	41749467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	137	555	0	ENST00000226382.2:c.328C>T	p.Leu110Phe	p.L110F	ENST00000226382	NM_003924.3	110	Ctc/Ttc																																																																															
KIT	3815	MSKCC	GRCh37	4	55593691	55593691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	103	414	0	ENST00000288135.5:c.1757G>T	p.Arg586Ile	p.R586I	ENST00000288135	NM_000222.2	586	aGa/aTa																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020958	26020973	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGACCTGCGTTTCC	ACAGACCTGCGTTTCC	-			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	91	504	0	ENST00000357647.3:c.242_257del	p.Thr81ArgfsTer5	p.T81Rfs*5	ENST00000357647	NM_003529.2	81	ACAGACCTGCGTTTCCag/ag																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450355	50450355	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	165	625	0	ENST00000331340.3:c.539A>G	p.Tyr180Cys	p.Y180C	ENST00000331340	NM_006060.4	180	tAc/tGc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465542	8465542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	128	512	0	ENST00000356435.5:c.3638G>T	p.Gly1213Val	p.G1213V	ENST00000356435		1213	gGa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	493	512	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156834552	156834552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	268	478	0	ENST00000524377.1:c.320C>T	p.Ala107Val	p.A107V	ENST00000524377	NM_002529.3	107	gCg/gTg																																																																															
KIT	3815	MSKCC	GRCh37	4	55561861	55561861	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201872586		P-0046534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	146	204	0	ENST00000288135.5:c.251C>T	p.Thr84Met	p.T84M	ENST00000288135	NM_000222.2	84	aCg/aTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903718	114903718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	213	355	1	ENST00000543371.1:c.722C>T	p.Pro241Leu	p.P241L	ENST00000543371	NM_001198531.1	241	cCg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944545	40944545	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200852571		P-0046534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	184	290	0	ENST00000373198.4:c.1957C>T	p.Arg653Trp	p.R653W	ENST00000373198	NM_133170.3	653	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112128209	112128212	+	frameshift_variant	Frame_Shift_Del	DEL	CAAG	CAAG	-			P-0046534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	90	227	0	ENST00000257430.4:c.715_718del	p.Ala239GlnfsTer53	p.A239Qfs*53	ENST00000257430	NM_000038.5	238	CAAGca/ca																																																																															
MED12	9968	MSKCC	GRCh37	X	70342066	70342066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	156	191	0	ENST00000374080.3:c.1118G>T	p.Cys373Phe	p.C373F	ENST00000374080		373	tGt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0046561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	31	725	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604717	48604717	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	58	441	0	ENST00000342988.3:c.1541del	p.Pro514GlnfsTer23	p.P514Qfs*23	ENST00000342988	NM_005359.5	513	taC/ta																																																																															
MGA	23269	MSKCC	GRCh37	15	42034984	42034984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	23	617	0	ENST00000219905.7:c.4826C>T	p.Thr1609Ile	p.T1609I	ENST00000219905	NM_001164273.1	1609	aCt/aTt																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46596966	46596966	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0046561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	17	406	0	ENST00000263734.3:c.781del	p.Ile261SerfsTer4	p.I261Sfs*4	ENST00000263734	NM_001430.4	260	agA/ag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	29	303	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500882	8500882	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs191877533		P-0046569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	132	458	0	ENST00000356435.5:c.2000C>T	p.Ser667Leu	p.S667L	ENST00000356435		667	tCg/tTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921522	178921523	+	inframe_insertion	In_Frame_Ins	INS	-	-	AATAAAAATTCTTTGTGCAACCTACGTGAATGT			P-0046569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	13	290	0	ENST00000263967.3:c.1007_1039dup	p.Ile336_Val346dup	p.I336_V346dup	ENST00000263967	NM_006218.2	336	aga/agAATAAAAATTCTTTGTGCAACCTACGTGAATGTa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	183	382	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	165	400	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs530941076		P-0046570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	173	675	0	ENST00000269305.4:c.658T>C	p.Tyr220His	p.Y220H	ENST00000269305	NM_001126112.2	220	Tat/Cat																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281320	49281320	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	188	747	0	ENST00000282018.3:c.367T>C	p.Tyr123His	p.Y123H	ENST00000282018	NM_020377.2	123	Tac/Cac																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652209	36652210	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	175	804	0	ENST00000244741.5:c.332dup	p.Asp112GlyfsTer17	p.D112Gfs*17	ENST00000244741	NM_000389.4	111	gtg/gTtg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933622	39933622	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200141801		P-0046570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	118	688	0	ENST00000378444.4:c.977C>T	p.Pro326Leu	p.P326L	ENST00000378444	NM_001123385.1	326	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	105	434	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	271	868	4	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	66	259	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174399	11174400	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGG			P-0046571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	124	624	0	ENST00000361445.4:c.7273_7275dup	p.Pro2425dup	p.P2425dup	ENST00000361445	NM_004958.3	2425	-/CCC																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0046596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	86	536	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	188	440	0	ENST00000346208.3:c.1300dup	p.His434ProfsTer73	p.H434Pfs*73	ENST00000346208		433	cac/caCc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845707	151845707	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	200	572	1	ENST00000262189.6:c.13305G>A	p.Trp4435Ter	p.W4435*	ENST00000262189	NM_170606.2	4435	tgG/tgA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0046606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	522	455	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056648	26056648	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	126	189	0	ENST00000343677.2:c.9G>C	p.Glu3Asp	p.E3D	ENST00000343677	NM_005319.3	3	gaG/gaC																																																																															
FH	2271	MSKCC	GRCh37	1	241683007	241683007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	277	482	2	ENST00000366560.3:c.16C>T	p.Arg6Trp	p.R6W	ENST00000366560	NM_000143.3	6	Cgg/Tgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168988	32168988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	820	632	1	ENST00000375023.3:c.4045G>A	p.Glu1349Lys	p.E1349K	ENST00000375023	NM_004557.3	1349	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099966	27099966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	333	531	0	ENST00000324856.7:c.3845G>A	p.Gly1282Glu	p.G1282E	ENST00000324856	NM_006015.4	1282	gGa/gAa																																																																															
RET	5979	MSKCC	GRCh37	10	43609077	43609077	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	309	630	2	ENST00000355710.3:c.1833C>A	p.Cys611Ter	p.C611*	ENST00000355710	NM_020975.4	611	tgC/tgA																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18650617	18650627	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGCAGGAA	GGCTGCAGGAA	-			P-0046606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	228	400	1	ENST00000266497.5:c.2832_2842del	p.Gln945GlyfsTer8	p.Q945Gfs*8	ENST00000266497		943	tGGCTGCAGGAA/t																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257669	19257669	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	387	678	0	ENST00000162023.5:c.557T>C	p.Leu186Pro	p.L186P	ENST00000162023		186	cTc/cCc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218134	36218134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	214	385	0	ENST00000222270.7:c.4081G>A	p.Asp1361Asn	p.D1361N	ENST00000222270	NM_014727.1	1361	Gat/Aat																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023609	31023609	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	363	498	2	ENST00000375687.4:c.3094G>C	p.Asp1032His	p.D1032H	ENST00000375687	NM_015338.5	1032	Gat/Cat																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31405819	31405906	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTTGCTGAATACTATTAAATAAAATAAAGTAAGACATACTTTAATTTCAAGATTCTTTTTTTTTTTTTTTTTTTTTTTTCAAAAAAT	GCTTGCTGAATACTATTAAATAAAATAAAGTAAGACATACTTTAATTTCAAGATTCTTTTTTTTTTTTTTTTTTTTTTTTCAAAAAAT	-			P-0046606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	138	213	0	ENST00000344624.3:c.3948-76_3959del		p.X1316_splice	ENST00000344624		1316																																																																																
RASA1	5921	MSKCC	GRCh37	5	86665718	86665718	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0046606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	148	286	0	ENST00000274376.6:c.1698+1G>A		p.X566_splice	ENST00000274376	NM_002890.2	566																																																																																
RASA1	5921	MSKCC	GRCh37	5	86682691	86682691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	123	222	0	ENST00000274376.6:c.2896C>T	p.Arg966Cys	p.R966C	ENST00000274376	NM_002890.2	966	Cgt/Tgt																																																																															
TEK	7010	MSKCC	GRCh37	9	27206783	27206783	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	239	371	0	ENST00000380036.4:c.2568A>T	p.Arg856Ser	p.R856S	ENST00000380036	NM_000459.3	856	agA/agT																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0046616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	157	537	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913389		P-0046616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	191	342	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216737	2216737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	431	640	0	ENST00000398665.3:c.2381G>A	p.Arg794Lys	p.R794K	ENST00000398665	NM_032482.2	794	aGg/aAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0046616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	88	348	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602390	10602391	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0046616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	542	662	0	ENST00000171111.5:c.1187dup	p.Tyr396Ter	p.Y396*	ENST00000171111	NM_203500.1	396	tac/taAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427251	49427268	+	inframe_deletion	In_Frame_Del	DEL	TGCTGCTGCTGCTGTTGC	TGCTGCTGCTGCTGTTGC	-			P-0046616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	135	553	0	ENST00000301067.7:c.11220_11237del	p.Gln3740_Gln3745del	p.Q3740_Q3745del	ENST00000301067	NM_003482.3	3740	caGCAACAGCAGCAGCAGCAc/cac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992062	72992062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	386	554	0	ENST00000268489.5:c.1983G>A	p.Met661Ile	p.M661I	ENST00000268489	NM_006885.3	661	atG/atA																																																																															
STK11	6794	MSKCC	GRCh37	19	1207051	1207051	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	562	769	0	ENST00000326873.7:c.140del	p.Gly47AlafsTer4	p.G47Afs*4	ENST00000326873	NM_000455.4	47	Ggc/gc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0046621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	63	408	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0046622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	56	591	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0046622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	69	515	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485816	57485816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	77	523	0	ENST00000371085.3:c.1117C>T	p.Arg373Cys	p.R373C	ENST00000371085	NM_000516.4	373	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591903	48591903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	59	564	0	ENST00000342988.3:c.1066C>T	p.Pro356Ser	p.P356S	ENST00000342988	NM_005359.5	356	Cct/Tct																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84390203	84390203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113013207		P-0046622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	72	439	0	ENST00000321945.7:c.578G>A	p.Arg193Gln	p.R193Q	ENST00000321945	NM_139076.2	193	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175397	112175404	+	frameshift_variant	Frame_Shift_Del	DEL	CCAAAAGT	CCAAAAGT	-			P-0046622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	109	352	0	ENST00000257430.4:c.4109_4116del	p.Lys1370ThrfsTer2	p.K1370Tfs*2	ENST00000257430	NM_000038.5	1369	cCCAAAAGT/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0046623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	438	816	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	273	538	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900209	101900209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	274	468	0	ENST00000374994.4:c.643C>T	p.Arg215Ter	p.R215*	ENST00000374994	NM_004612.2	215	Cga/Tga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099439	157099439	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	19	338	0	ENST00000346085.5:c.376C>T	p.Gln126Ter	p.Q126*	ENST00000346085	NM_020732.3	126	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428450	49428450	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0046623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	463	867	0	ENST00000301067.7:c.10356-1G>A		p.X3452_splice	ENST00000301067	NM_003482.3	3452																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52621446	52621446	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	354	521	0	ENST00000394830.3:c.2971G>T	p.Glu991Ter	p.E991*	ENST00000394830	NM_018313.4	991	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0046624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	116	481	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206666657	206666657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	162	654	0	ENST00000367120.3:c.1991C>T	p.Ser664Leu	p.S664L	ENST00000367120	NM_014002.3	664	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	38	278	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	96	511	1	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112888210	112888210	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121918464		P-0046624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	86	560	0	ENST00000351677.2:c.226G>A	p.Glu76Lys	p.E76K	ENST00000351677	NM_002834.3	76	Gag/Aag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0046624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	431	866	1	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0046624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	122	491	3	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
AXL	558	MSKCC	GRCh37	19	41727943	41727943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	127	712	0	ENST00000301178.4:c.568C>T	p.Arg190Cys	p.R190C	ENST00000301178	NM_021913.4	190	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112173657	112173658	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0046624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	75	425	0	ENST00000257430.4:c.2369_2370del	p.Arg790ThrfsTer8	p.R790Tfs*8	ENST00000257430	NM_000038.5	789	cAG/c																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813333	102813333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	113	613	0	ENST00000307046.8:c.356G>A	p.Arg119His	p.R119H	ENST00000307046	NM_001111285.1	119	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0046624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	293	699	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31493329	31493329	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	69	380	0	ENST00000344624.3:c.1827T>G	p.His609Gln	p.H609Q	ENST00000344624		609	caT/caG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0046628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	359	685	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0046628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	375	781	0	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga																																																																															
APC	324	MSKCC	GRCh37	5	112178410	112178410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	38	442	0	ENST00000257430.4:c.7119G>A	p.Met2373Ile	p.M2373I	ENST00000257430	NM_000038.5	2373	atG/atA																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223188	2223188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	158	687	2	ENST00000326181.6:c.800C>T	p.Thr267Met	p.T267M	ENST00000326181	NM_032271.2	267	aCg/aTg																																																																															
RAD51	5888	MSKCC	GRCh37	15	41001254	41001254	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	31	529	0	ENST00000267868.3:c.375G>C	p.Met125Ile	p.M125I	ENST00000267868	NM_002875.4	125	atG/atC																																																																															
APC	324	MSKCC	GRCh37	5	112178500	112178500	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	30	364	0	ENST00000257430.4:c.7209G>C	p.Gln2403His	p.Q2403H	ENST00000257430	NM_000038.5	2403	caG/caC																																																																															
APC	324	MSKCC	GRCh37	5	112178870	112178870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	35	409	0	ENST00000257430.4:c.7579G>A	p.Asp2527Asn	p.D2527N	ENST00000257430	NM_000038.5	2527	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112179081	112179081	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	26	323	0	ENST00000257430.4:c.7790G>C	p.Gly2597Ala	p.G2597A	ENST00000257430	NM_000038.5	2597	gGa/gCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259454	55259454	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	302	551	0	ENST00000275493.2:c.2512C>G	p.Leu838Val	p.L838V	ENST00000275493	NM_005228.3	838	Ctg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	63	327	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	23	436	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	79	348	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654616	67654616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	101	427	0	ENST00000264010.4:c.1103G>A	p.Arg368His	p.R368H	ENST00000264010	NM_006565.3	368	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0046574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	195	716	1	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37681139	37681139	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0046574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	112	429	0	ENST00000447079.4:c.3307+1G>A		p.X1103_splice	ENST00000447079	NM_015083.1	1103																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41419867	41419867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	345	538	0	ENST00000373198.4:c.454G>A	p.Ala152Thr	p.A152T	ENST00000373198	NM_133170.3	152	Gcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936096	178936096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	47	469	0	ENST00000263967.3:c.1638G>C	p.Gln546His	p.Q546H	ENST00000263967	NM_006218.2	546	caG/caC																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245521	153245521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	71	347	0	ENST00000281708.4:c.1670G>T	p.Gly557Val	p.G557V	ENST00000281708	NM_033632.3	557	gGa/gTa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0046574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	77	262	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112155002	112155002	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	108	510	1	ENST00000257430.4:c.1273G>T	p.Glu425Ter	p.E425*	ENST00000257430	NM_000038.5	425	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175587	112175794	+	frameshift_variant	Frame_Shift_Del	DEL	ACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCT	ACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCT	-			P-0046574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	51	309	0	ENST00000257430.4:c.4296_4503del	p.Pro1433ValfsTer5	p.P1433Vfs*5	ENST00000257430	NM_000038.5	1432	ccACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCT/cc																																																																															
ATRX	546	MSKCC	GRCh37	X	76952063	76952063	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0046574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	16	296	0	ENST00000373344.5:c.370+2T>C		p.X124_splice	ENST00000373344	NM_000489.3	124																																																																																
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0046576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1175	94	928	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0046581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	67	333	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0046581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	91	508	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182641	38182641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	13	406	0	ENST00000396334.3:c.794T>C	p.Leu265Pro	p.L265P	ENST00000396334	NM_002468.4	265	cTg/cCg																																																																															
APC	324	MSKCC	GRCh37	5	112174998	112174999	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0046581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	46	197	0	ENST00000257430.4:c.3709_3710del	p.Gln1237GlufsTer2	p.Q1237Efs*2	ENST00000257430	NM_000038.5	1236	gCA/g																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117435	115117435	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	80	361	0	ENST00000257566.3:c.739A>G	p.Lys247Glu	p.K247E	ENST00000257566	NM_016569.3	247	Aaa/Gaa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500630	99500630	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	202	679	1	ENST00000268035.6:c.4063A>G	p.Asn1355Asp	p.N1355D	ENST00000268035	NM_000875.3	1355	Aac/Gac																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395659	45395659	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	72	422	0	ENST00000262160.6:c.475G>T	p.Glu159Ter	p.E159*	ENST00000262160	NM_005901.5	159	Gaa/Taa																																																																															
ABL1	25	MSKCC	GRCh37	9	133761003	133761003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	144	856	0	ENST00000318560.5:c.3326C>T	p.Ala1109Val	p.A1109V	ENST00000318560	NM_005157.4	1109	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0046582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	110	326	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685307	89685307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	142	251	0	ENST00000371953.3:c.202T>C	p.Tyr68His	p.Y68H	ENST00000371953	NM_000314.4	68	Tac/Cac																																																																															
AXL	558	MSKCC	GRCh37	19	41748895	41748895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	553	695	0	ENST00000301178.4:c.1420C>T	p.Arg474Trp	p.R474W	ENST00000301178	NM_021913.4	474	Cgg/Tgg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412647	63412648	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	356	711	0	ENST00000330258.3:c.519dupT	p.Ser174Ter	p.S174*	ENST00000330258	NM_152424.3	173	-/T																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3830878	3830878	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	299	519	1	ENST00000262367.5:c.1678C>T	p.Pro560Ser	p.P560S	ENST00000262367	NM_004380.2	560	Cca/Tca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830189	72830189	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	181	513	0	ENST00000268489.5:c.6392T>G	p.Leu2131Arg	p.L2131R	ENST00000268489	NM_006885.3	2131	cTc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577107	7577115	+	inframe_deletion	In_Frame_Del	DEL	ACAGGCACA	ACAGGCACA	-			P-0046582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	362	721	0	ENST00000269305.4:c.823_831del	p.Cys275_Cys277del	p.C275_C277del	ENST00000269305	NM_001126112.2	275	TGTGCCTGT/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0046586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	22	572	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0046588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	122	483	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																															
SPOP	8405	MSKCC	GRCh37	17	47699363	47699363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	36	303	0	ENST00000347630.2:c.145G>A	p.Gly49Ser	p.G49S	ENST00000347630	NM_001007230.1	49	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0026571-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			136	133	745	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248980	55248981	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	TCCAGGAAGCCT			P-0026571-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			263	214	513	0	ENST00000275493.2:c.2284-5_2290dup		p.X762_splice	ENST00000275493	NM_005228.3	762																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52623170	52623170	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026571-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			149	23	491	0	ENST00000394830.3:c.2881G>C	p.Gly961Arg	p.G961R	ENST00000394830	NM_018313.4	961	Gga/Cga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0044577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	180	599	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SDHC	6391	MSKCC	GRCh37	1	161284210	161284210	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	116	469	0	ENST00000367975.2:c.15G>C	p.Leu5Phe	p.L5F	ENST00000367975	NM_003001.3	5	ttG/ttC																																																																															
TET1	80312	MSKCC	GRCh37	10	70333347	70333347	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	160	576	0	ENST00000373644.4:c.1252A>T	p.Thr418Ser	p.T418S	ENST00000373644	NM_030625.2	418	Act/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	44	276	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	79	681	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73335782	73335782	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0046309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	55	236	0	ENST00000377767.4:c.2511+2T>C		p.X837_splice	ENST00000377767	NM_014953.3	837																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118373784	118373784	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	38	247	0	ENST00000534358.1:c.7177A>C	p.Asn2393His	p.N2393H	ENST00000534358	NM_005933.3	2393	Aac/Cac																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73112851	73112851	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	22	220	0	ENST00000356692.5:c.448del	p.Met150Ter	p.M150*	ENST00000356692		149	cgA/cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0046337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	68	325	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0046337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	1322	391	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356427	66356427	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	67	238	0	ENST00000273854.3:c.1070C>A	p.Pro357His	p.P357H	ENST00000273854	NM_004439.5	357	cCc/cAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040977	47040977	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	133	615	0	ENST00000329236.7:c.1273del	p.Ala425LeufsTer201	p.A425Lfs*201	ENST00000329236	NM_001204466.1	425	Gct/ct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	211	314	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0046340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	100	248	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0046340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	482	549	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528647	89528647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	115	149	1	ENST00000336596.2:c.2947G>A	p.Val983Met	p.V983M	ENST00000336596	NM_005233.5	983	Gtg/Atg																																																																															
ATM	472	MSKCC	GRCh37	11	108199948	108199948	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	47	142	0	ENST00000278616.4:c.7290T>G	p.His2430Gln	p.H2430Q	ENST00000278616	NM_000051.3	2430	caT/caG																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862839	9862839	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	179	525	2	ENST00000330684.3:c.2464T>C	p.Tyr822His	p.Y822H	ENST00000330684	NM_001134407.1	822	Tac/Cac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448374	56448375	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0046340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	424	544	2	ENST00000407977.2:c.272_273delinsTT	p.Cys91Phe	p.C91F	ENST00000407977		91	tGC/tTT																																																																															
ACVR1	90	MSKCC	GRCh37	2	158637111	158637163	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCTGCAAAGGAGAGAAAGGAAGGGGAAAAAAAAAAAAAAGAGGAATTACCGT	ATCTGCAAAGGAGAGAAAGGAAGGGGAAAAAAAAAAAAAAGAGGAATTACCGT	-			P-0046340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	260	324	0	ENST00000263640.3:c.68-51_69del		p.X23_splice	ENST00000263640	NM_001105.4	23																																																																																
PREX2	80243	MSKCC	GRCh37	8	69005874	69005874	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	122	347	1	ENST00000288368.4:c.2285A>G	p.Glu762Gly	p.E762G	ENST00000288368	NM_024870.2	762	gAg/gGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	246	319	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0046342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	243	311	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0046342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	247	557	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944279	81944279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747373917		P-0046342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	320	582	2	ENST00000359376.3:c.1888C>T	p.Arg630Trp	p.R630W	ENST00000359376	NM_002661.3	630	Cgg/Tgg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460527	149460527	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139635308		P-0046342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	183	578	1	ENST00000286301.3:c.110C>T	p.Thr37Met	p.T37M	ENST00000286301	NM_005211.3	37	aCg/aTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436533	110436533	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	178	627	0	ENST00000375856.3:c.1868T>C	p.Val623Ala	p.V623A	ENST00000375856	NM_003749.2	623	gTg/gCg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593553	48593554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	69	163	0	ENST00000342988.3:c.1307dup	p.Val437GlyfsTer3	p.V437Gfs*3	ENST00000342988	NM_005359.5	435	ata/atAa																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197358	26197358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	94	351	0	ENST00000356476.2:c.121C>T	p.Arg41Cys	p.R41C	ENST00000356476		41	Cgt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	218	431	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519816		P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	531	491	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579406	7579406	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	278	569	0	ENST00000269305.4:c.281C>G	p.Ser94Ter	p.S94*	ENST00000269305	NM_001126112.2	94	tCa/tGa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690814	89690814	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	73	230	0	ENST00000371953.3:c.221G>C	p.Arg74Thr	p.R74T	ENST00000371953	NM_000314.4	74	aGa/aCa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131925368	131925368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	64	124	0	ENST00000265335.6:c.1291G>A	p.Glu431Lys	p.E431K	ENST00000265335		431	Gag/Aag																																																																															
AKT3	10000	MSKCC	GRCh37	1	243708820	243708820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	142	280	0	ENST00000263826.5:c.1243G>A	p.Asp415Asn	p.D415N	ENST00000263826	NM_005465.4	415	Gat/Aat																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118339506	118339506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	194	289	0	ENST00000534358.1:c.449G>A	p.Gly150Asp	p.G150D	ENST00000534358	NM_005933.3	150	gGt/gAt																																																																															
RB1	5925	MSKCC	GRCh37	13	49033953	49033953	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	457	323	0	ENST00000267163.4:c.2090del	p.Asp697AlafsTer8	p.D697Afs*8	ENST00000267163	NM_000321.2	697	gAc/gc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986829	36986829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	47	118	1	ENST00000354822.5:c.860G>A	p.Arg287His	p.R287H	ENST00000354822	NM_001079668.2	287	cGc/cAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89337228	89337228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	106	411	0	ENST00000301030.4:c.7803G>A	p.Met2601Ile	p.M2601I	ENST00000301030	NM_001256183.1	2601	atG/atA																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10260319	10260319	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	157	474	0	ENST00000340748.4:c.2348G>C	p.Trp783Ser	p.W783S	ENST00000340748		783	tGg/tCg																																																																															
EP300	2033	MSKCC	GRCh37	22	41548288	41548288	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	146	255	0	ENST00000263253.7:c.3076G>T	p.Glu1026Ter	p.E1026*	ENST00000263253	NM_001429.3	1026	Gag/Tag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188337	32188337	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	85	579	0	ENST00000375023.3:c.1004C>G	p.Ser335Cys	p.S335C	ENST00000375023	NM_004557.3	335	tCt/tGt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520009		P-0046362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	8	404	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521285	187521285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200468783		P-0046362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	36	542	1	ENST00000441802.2:c.11870G>A	p.Arg3957His	p.R3957H	ENST00000441802	NM_005245.3	3957	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	75	344	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	93	372	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	80	375	1	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534325	63534325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	20	791	0	ENST00000307078.5:c.1196G>A	p.Arg399Gln	p.R399Q	ENST00000307078	NM_004655.3	399	cGa/cAa																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116263	209116263	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	12	257	0	ENST00000345146.2:c.13delA	p.Ile5SerfsTer7	p.I5Sfs*7	ENST00000345146	NM_005896.2	5	Atc/tc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822563	72822564	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	33	607	0	ENST00000268489.5:c.9609_9611dupGCA	p.Gln3204dup	p.Q3204dup	ENST00000268489	NM_006885.3	3204	caa/caGCAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	40	450	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026105	71026105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	28	333	0	ENST00000318789.4:c.1517C>T	p.Ala506Val	p.A506V	ENST00000318789	NM_032682.5	506	gCg/gTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	96	643	0	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265522	152265522	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	66	564	0	ENST00000206249.3:c.975del	p.Ile326TyrfsTer17	p.I326Yfs*17	ENST00000206249	NM_000125.3	325	ccG/cc																																																																															
MST1	4485	MSKCC	GRCh37	3	49722761	49722761	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs62262682		P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	10	46	2	ENST00000449682.2:c.1478G>T	p.Arg493Leu	p.R493L	ENST00000449682	NM_020998.3	493	cGt/cTt																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	19	438	1	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101259	27101259	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	18	625	0	ENST00000324856.7:c.4541delC	p.Thr1514ArgfsTer13	p.T1514Rfs*13	ENST00000324856	NM_006015.4	1514	aCg/ag																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38967452	38967452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	38	347	0	ENST00000357387.3:c.1138C>T	p.Arg380Cys	p.R380C	ENST00000357387	NM_152756.3	380	Cgt/Tgt																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003784	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	81	547	0	ENST00000558401.1:c.41_44delCTCT	p.Ser14PhefsTer29	p.S14Ffs*29	ENST00000558401	NM_004048.2	13	CTCTct/ct																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671654	67671655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	13	529	0	ENST00000264010.4:c.2070dup	p.Glu691ArgfsTer5	p.E691Rfs*5	ENST00000264010	NM_006565.3	688	gta/gtAa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434595	110434595	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	154	662	0	ENST00000375856.3:c.3806A>C	p.Gln1269Pro	p.Q1269P	ENST00000375856	NM_003749.2	1269	cAg/cCg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741839	17741840	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	17	207	0	ENST00000250003.3:c.515dup	p.Gly173TrpfsTer105	p.G173Wfs*105	ENST00000250003	NM_002478.4	170	-/C																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81819743	81819743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	22	650	0	ENST00000359376.3:c.149G>A	p.Arg50Gln	p.R50Q	ENST00000359376	NM_002661.3	50	cGg/cAg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	14	851	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
B2M	567	MSKCC	GRCh37	15	45007794	45007797	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	43	445	0	ENST00000558401.1:c.244_247del	p.Phe82IlefsTer20	p.F82Ifs*20	ENST00000558401	NM_004048.2	81	TCTTtc/tc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931858	68931858	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	36	610	0	ENST00000288368.4:c.291del	p.Glu98AsnfsTer42	p.E98Nfs*42	ENST00000288368	NM_024870.2	96	caC/ca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	46	931	3	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244967	46244967	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	67	579	1	ENST00000334344.6:c.3065delC	p.Pro1022HisfsTer38	p.P1022Hfs*38	ENST00000334344	NM_152641.2	1021	Ccc/cc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874149	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	37	494	1	ENST00000262189.6:c.8389_8390del	p.Lys2797GlyfsTer11	p.K2797Gfs*11	ENST00000262189	NM_170606.2	2797	AAg/g																																																																															
SRC	6714	MSKCC	GRCh37	20	36026125	36026125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	87	936	1	ENST00000358208.4:c.727C>T	p.Arg243Cys	p.R243C	ENST00000358208		243	Cgc/Tgc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103666	47103666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	10	364	2	ENST00000409792.3:c.6280del	p.Arg2094GlyfsTer53	p.R2094Gfs*53	ENST00000409792	NM_014159.6	2094	Agg/gg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864377	162864377	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75860381		P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	75	470	0	ENST00000366898.1:c.136G>A	p.Ala46Thr	p.A46T	ENST00000366898	NM_004562.2	46	Gca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436060	49436060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	51	622	1	ENST00000301067.7:c.5921C>T	p.Thr1974Met	p.T1974M	ENST00000301067	NM_003482.3	1974	aCg/aTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55955043	55955043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	14	449	0	ENST00000263923.4:c.3502G>A	p.Ala1168Thr	p.A1168T	ENST00000263923	NM_002253.2	1168	Gct/Act																																																																															
MTOR	2475	MSKCC	GRCh37	1	11217225	11217225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	16	541	2	ENST00000361445.4:c.4453G>A	p.Glu1485Lys	p.E1485K	ENST00000361445	NM_004958.3	1485	Gag/Aag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346113	89346114	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	12	251	1	ENST00000301030.4:c.6836_6837del	p.Val2279GlyfsTer16	p.V2279Gfs*16	ENST00000301030	NM_001256183.1	2279	gTG/g																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10277309	10277309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	88	811	2	ENST00000340748.4:c.808G>A	p.Val270Met	p.V270M	ENST00000340748		270	Gtg/Atg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128038133	128038133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	63	421	0	ENST00000285398.2:c.1417G>A	p.Glu473Lys	p.E473K	ENST00000285398	NM_000122.1	473	Gaa/Aaa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805755	32805755	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	37	831	0	ENST00000374899.4:c.256del	p.Ala86ProfsTer34	p.A86Pfs*34	ENST00000374899	NM_018833.2	86	Gcc/cc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332177	70332177	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	20	259	0	ENST00000373644.4:c.82C>T	p.Arg28Ter	p.R28*	ENST00000373644	NM_030625.2	28	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114905837	114905837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	92	572	0	ENST00000543371.1:c.856G>A	p.Val286Ile	p.V286I	ENST00000543371	NM_001198531.1	286	Gtc/Atc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279509	123279509	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	25	663	0	ENST00000358487.5:c.923A>G	p.Tyr308Cys	p.Y308C	ENST00000358487	NM_000141.4	308	tAc/tGc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67201496	67201496	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	52	875	1	ENST00000312629.5:c.941del	p.Gly314ValfsTer18	p.G314Vfs*18	ENST00000312629	NM_003952.2	313	Ggg/gg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77043842	77043842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	93	738	2	ENST00000356341.3:c.1484G>A	p.Arg495Gln	p.R495Q	ENST00000356341	NM_002576.4	495	cGg/cAg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18478033	18478033	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	24	439	0	ENST00000266497.5:c.1272+1G>A		p.X424_splice	ENST00000266497		424																																																																																
PIK3C2G	5288	MSKCC	GRCh37	12	18552656	18552656	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	14	588	0	ENST00000266497.5:c.2067C>A	p.Cys689Ter	p.C689*	ENST00000266497		689	tgC/tgA																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244605	46244605	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	11	486	2	ENST00000334344.6:c.2699C>A	p.Pro900His	p.P900H	ENST00000334344	NM_152641.2	900	cCt/cAt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748905	43748905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	24	864	0	ENST00000382044.4:c.1901C>T	p.Pro634Leu	p.P634L	ENST00000382044	NM_001141980.1	634	cCg/cTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2120491	2120491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	22	822	1	ENST00000219476.3:c.1751C>T	p.Thr584Met	p.T584M	ENST00000219476	NM_000548.3	584	aCg/aTg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641240	23641240	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	48	750	0	ENST00000261584.4:c.2235del	p.Ala746HisfsTer18	p.A746Hfs*18	ENST00000261584	NM_024675.3	745	aaA/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832034	72832034	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	14	616	0	ENST00000268489.5:c.4547A>T	p.Asp1516Val	p.D1516V	ENST00000268489	NM_006885.3	1516	gAc/gTc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37871559	37871559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	113	843	1	ENST00000269571.5:c.1169C>T	p.Ala390Val	p.A390V	ENST00000269571		390	gCc/gTc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868403	45868403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	64	874	0	ENST00000391945.4:c.374G>A	p.Arg125His	p.R125H	ENST00000391945	NM_000400.3	125	cGc/cAc																																																																															
RRAS	6237	MSKCC	GRCh37	19	50138892	50138892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	47	1180	2	ENST00000246792.3:c.598C>T	p.Pro200Ser	p.P200S	ENST00000246792	NM_006270.3	200	Ccg/Tcg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469534	25469534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	62	781	0	ENST00000264709.3:c.1234G>T	p.Gly412Trp	p.G412W	ENST00000264709	NM_175629.2	412	Ggg/Tgg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703581	47703581	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	69	598	0	ENST00000233146.2:c.2081T>C	p.Phe694Ser	p.F694S	ENST00000233146	NM_000251.2	694	tTt/tCt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017730	31017730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	62	675	0	ENST00000375687.4:c.592G>A	p.Glu198Lys	p.E198K	ENST00000375687	NM_015338.5	198	Gag/Aag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960003	134960003	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	31	427	0	ENST00000398015.3:c.2360C>A	p.Pro787His	p.P787H	ENST00000398015	NM_004441.4	787	cCt/cAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535424	66535424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	30	329	0	ENST00000273854.3:c.37C>T	p.Arg13Trp	p.R13W	ENST00000273854	NM_004439.5	13	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112128156	112128156	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	47	349	0	ENST00000257430.4:c.659del	p.Arg220LysfsTer73	p.R220Kfs*73	ENST00000257430	NM_000038.5	220	aGa/aa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048638	180048638	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	51	766	0	ENST00000261937.6:c.1924del	p.Arg642AlafsTer43	p.R642Afs*43	ENST00000261937	NM_182925.4	642	Cgc/gc																																																																															
STK19	8859	MSKCC	GRCh37	6	31946713	31946713	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145128680		P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	55	603	1	ENST00000375331.2:c.601G>A	p.Val201Ile	p.V201I	ENST00000375331	NM_004197.1	201	Gtc/Atc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157505472	157505473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	85	447	0	ENST00000346085.5:c.3456dup	p.Glu1153Ter	p.E1153*	ENST00000346085	NM_020732.3	1151	-/T																																																																															
EGFR	1956	MSKCC	GRCh37	7	55211145	55211145	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	12	407	0	ENST00000275493.2:c.388A>C	p.Thr130Pro	p.T130P	ENST00000275493	NM_005228.3	130	Acc/Ccc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	66	479	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356133	66356133	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1349813115		P-0046495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	92	571	0	ENST00000273854.3:c.1364G>A	p.Arg455Gln	p.R455Q	ENST00000273854	NM_004439.5	455	cGg/cAg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691947	30691947	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	64	379	0	ENST00000359013.4:c.524C>G	p.Ser175Ter	p.S175*	ENST00000359013	NM_001024847.2	175	tCa/tGa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041022	47041022	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	157	826	0	ENST00000329236.7:c.1318C>T	p.Gln440Ter	p.Q440*	ENST00000329236	NM_001204466.1	440	Cag/Tag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779676	3779676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	185	855	0	ENST00000262367.5:c.5372C>T	p.Ser1791Leu	p.S1791L	ENST00000262367	NM_004380.2	1791	tCg/tTg																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154356	2154356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	197	1071	1	ENST00000434045.2:c.572G>T	p.Arg191Leu	p.R191L	ENST00000434045	NM_001127598.1	191	cGt/cTt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262458	10262458	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	160	786	0	ENST00000340748.4:c.2037T>A	p.Ser679Arg	p.S679R	ENST00000340748		679	agT/agA																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24135874	24135874	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0046495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	85	495	0	ENST00000263121.7:c.361A>T	p.Arg121Trp	p.R121W	ENST00000263121	NM_003073.3	121	Agg/Tgg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665483	138665483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	132	619	0	ENST00000330315.3:c.82G>A	p.Glu28Lys	p.E28K	ENST00000330315	NM_023067.3	28	Gaa/Aaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356223	66356223	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	140	672	0	ENST00000273854.3:c.1274C>G	p.Ser425Cys	p.S425C	ENST00000273854	NM_004439.5	425	tCt/tGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874395	151874395	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	162	477	0	ENST00000262189.6:c.8143G>T	p.Glu2715Ter	p.E2715*	ENST00000262189	NM_170606.2	2715	Gaa/Taa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528636	8528636	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	66	460	0	ENST00000356435.5:c.496G>C	p.Val166Leu	p.V166L	ENST00000356435		166	Gtg/Ctg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0046525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	14	435	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0046526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	166	335	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519922		P-0046526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	37	527	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																															
NUP93	9688	MSKCC	GRCh37	16	56855497	56855497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	77	313	1	ENST00000308159.5:c.646G>A	p.Asp216Asn	p.D216N	ENST00000308159	NM_014669.4	216	Gat/Aat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125789	47125789	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	92	287	1	ENST00000409792.3:c.5481G>A	p.Trp1827Ter	p.W1827*	ENST00000409792	NM_014159.6	1827	tgG/tgA																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1978223	1978223	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	156	542	0	ENST00000382891.5:c.3643G>C	p.Glu1215Gln	p.E1215Q	ENST00000382891	NM_133335.3	1215	Gag/Cag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55151654	55151654	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0046526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	101	406	0	ENST00000257290.5:c.2439+1G>C		p.X813_splice	ENST00000257290	NM_006206.4	813																																																																																
TET2	54790	MSKCC	GRCh37	4	106155923	106155923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	74	320	0	ENST00000380013.4:c.824A>G	p.Asn275Ser	p.N275S	ENST00000380013	NM_001127208.2	275	aAt/aGt																																																																															
CCND3	896	MSKCC	GRCh37	6	41903701	41903701	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	138	637	0	ENST00000372991.4:c.856G>T	p.Asp286Tyr	p.D286Y	ENST00000372991	NM_001760.3	286	Gat/Tat																																																																															
BTK	695	MSKCC	GRCh37	X	100612528	100612528	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	105	439	0	ENST00000308731.7:c.1146G>C	p.Lys382Asn	p.K382N	ENST00000308731	NM_000061.2	382	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	357	707	0	ENST00000269305.4:c.314G>A	p.Gly105Asp	p.G105D	ENST00000269305	NM_001126112.2	105	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0046529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	144	649	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	42	199	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	77	392	1	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400932	72400932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	141	310	0	ENST00000357731.5:c.239C>T	p.Ala80Val	p.A80V	ENST00000357731	NM_173808.2	80	gCg/gTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118950	70118950	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	364	679	0	ENST00000245479.2:c.522C>A	p.Tyr174Ter	p.Y174*	ENST00000245479	NM_000346.3	174	taC/taA																																																																															
BARD1	580	MSKCC	GRCh37	2	215646155	215646155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	252	388	0	ENST00000260947.4:c.443G>T	p.Ser148Ile	p.S148I	ENST00000260947	NM_000465.2	148	aGc/aTc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795030	242795030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	268	805	1	ENST00000334409.5:c.179C>T	p.Ser60Leu	p.S60L	ENST00000334409	NM_005018.2	60	tCg/tTg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163603	32163603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	127	498	0	ENST00000375023.3:c.5623G>A	p.Ala1875Thr	p.A1875T	ENST00000375023	NM_004557.3	1875	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0046530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	172	594	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591104	67591115	+	inframe_deletion	In_Frame_Del	DEL	TTAAACCAGACC	TTAAACCAGACC	-			P-0046530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	201	262	0	ENST00000274335.5:c.1700_1711del	p.Lys567_Leu570del	p.K567_L570del	ENST00000274335		566	aTTAAACCAGACCtt/att																																																																															
WT1	7490	MSKCC	GRCh37	11	32456266	32456266	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1530	158	691	0	ENST00000332351.3:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000332351	NM_024426.4	209	cAg/cCg																																																																															
MGA	23269	MSKCC	GRCh37	15	42054326	42054326	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0046532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	94	250	0	ENST00000219905.7:c.7511-1G>A		p.X2504_splice	ENST00000219905	NM_001164273.1	2504																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44820602	44820602	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	213	336	0	ENST00000377967.4:c.299G>T	p.Gly100Val	p.G100V	ENST00000377967	NM_021140.2	100	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	41	250	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0046434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	157	727	0	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041244	47041244	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	115	345	0	ENST00000329236.7:c.1438C>T	p.Gln480Ter	p.Q480*	ENST00000329236	NM_001204466.1	480	Cag/Tag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67660493	67660493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	63	266	0	ENST00000264010.4:c.1393C>T	p.Gln465Ter	p.Q465*	ENST00000264010	NM_006565.3	465	Caa/Taa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78704465	78704465	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	67	356	0	ENST00000306801.3:c.613T>A	p.Ser205Thr	p.S205T	ENST00000306801	NM_020761.2	205	Tcc/Acc																																																																															
RB1	5925	MSKCC	GRCh37	13	49037865	49037865	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0046437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	81	167	0	ENST00000267163.4:c.2107-2A>G		p.X703_splice	ENST00000267163	NM_000321.2	703																																																																																
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	360	688	0	ENST00000269305.4:c.329del	p.Arg110LeufsTer13	p.R110Lfs*13	ENST00000269305	NM_001126112.2	110	cGt/ct																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004729	16004729	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	73	505	0	ENST00000268712.3:c.2525A>C	p.Lys842Thr	p.K842T	ENST00000268712	NM_006311.3	842	aAa/aCa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151871270	151871270	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	135	317	0	ENST00000262189.6:c.9320T>C	p.Ile3107Thr	p.I3107T	ENST00000262189	NM_170606.2	3107	aTa/aCa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382152	152382154	+	inframe_deletion	In_Frame_Del	DEL	TGG	TGG	-			P-0046439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	126	237	0	ENST00000206249.3:c.1265_1267del	p.Val422del	p.V422del	ENST00000206249	NM_000125.3	421	aTGGtg/atg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111475	8111476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	231	503	1	ENST00000346208.3:c.962dupA	p.Thr322AspfsTer30	p.T322Dfs*30	ENST00000346208		321	cag/cAag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645075	67645075	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	158	536	3	ENST00000264010.4:c.340C>T	p.Gln114Ter	p.Q114*	ENST00000264010	NM_006565.3	114	Cag/Tag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645084	67645084	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	166	553	3	ENST00000264010.4:c.349C>T	p.Gln117Ter	p.Q117*	ENST00000264010	NM_006565.3	117	Caa/Taa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382251	152382251	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	225	279	3	ENST00000206249.3:c.1361T>G	p.Leu454Arg	p.L454R	ENST00000206249	NM_000125.3	454	cTt/cGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29527439	29527439	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0046452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	49	300	0	ENST00000358273.4:c.889-1G>A		p.X297_splice	ENST00000358273	NM_001042492.2	297																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27100329	27100377	+	frameshift_variant	Frame_Shift_Del	DEL	CACCCCTTCTGGCAGCCCCTTCCCCAGCCAGCAGACTACAATGTATCAA	CACCCCTTCTGGCAGCCCCTTCCCCAGCCAGCAGACTACAATGTATCAA	-			P-0046452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	121	764	0	ENST00000324856.7:c.4043_4091del	p.Thr1348SerfsTer117	p.T1348Sfs*117	ENST00000324856	NM_006015.4	1347	ggCACCCCTTCTGGCAGCCCCTTCCCCAGCCAGCAGACTACAATGTATCAA/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578490	7578490	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1307	136	1080	0	ENST00000269305.4:c.440T>C	p.Val147Ala	p.V147A	ENST00000269305	NM_001126112.2	147	gTt/gCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	19	291	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0046455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	36	556	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	68	365	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	189	622	1	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952019	178952019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	10	294	0	ENST00000263967.3:c.3074C>G	p.Thr1025Ser	p.T1025S	ENST00000263967	NM_006218.2	1025	aCc/aGc																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0046463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	33	237	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0046467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	41	328	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579547	7579547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	81	771	1	ENST00000269305.4:c.140del	p.Pro47ArgfsTer76	p.P47Rfs*76	ENST00000269305	NM_001126112.2	47	cCg/cg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575151	48575151	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	34	284	0	ENST00000342988.3:c.345T>G	p.Cys115Trp	p.C115W	ENST00000342988	NM_005359.5	115	tgT/tgG																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794464	242794464	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1227	97	1016	0	ENST00000334409.5:c.478C>G	p.Pro160Ala	p.P160A	ENST00000334409	NM_005018.2	160	Ccc/Gcc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020351	69020351	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201443824		P-0046467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	77	319	0	ENST00000288368.4:c.2723G>A	p.Arg908His	p.R908H	ENST00000288368	NM_024870.2	908	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0046468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	769	574	0	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243668570	243668570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	80	283	0	ENST00000263826.5:c.1421C>T	p.Ser474Phe	p.S474F	ENST00000263826	NM_005465.4	474	tCt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACT			P-0046468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	4166	539	0	ENST00000275493.2:c.2310_2311insTAC	p.Asp770_Asn771insTyr	p.D770_N771insY	ENST00000275493	NM_005228.3	770	gac/gACTac																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570311	87570311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	279	590	0	ENST00000277120.3:c.2051C>T	p.Ala684Val	p.A684V	ENST00000277120		684	gCg/gTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799333	88799333	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	185	411	0	ENST00000360948.2:c.52C>G	p.Leu18Val	p.L18V	ENST00000360948	NM_001012338.2	18	Ctg/Gtg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190717439	190717439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	93	254	1	ENST00000441310.2:c.758C>T	p.Ser253Leu	p.S253L	ENST00000441310	NM_000534.4	253	tCa/tTa																																																																															
TP63	8626	MSKCC	GRCh37	3	189608654	189608654	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	182	370	0	ENST00000264731.3:c.1729G>C	p.Glu577Gln	p.E577Q	ENST00000264731	NM_003722.4	577	Gag/Cag																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839894	27839894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	276	626	0	ENST00000328488.2:c.200C>T	p.Pro67Leu	p.P67L	ENST00000328488	NM_003533.2	67	cCt/cTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55269023	55269023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			4647	454	523	0	ENST00000275493.2:c.3089C>T	p.Ser1030Leu	p.S1030L	ENST00000275493	NM_005228.3	1030	tCa/tTa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	419049	419049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	15	425	1	ENST00000399788.2:c.3298G>A	p.Glu1100Lys	p.E1100K	ENST00000399788	NM_001042603.1	1100	Gaa/Aaa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16097825	16097825	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs73281920		P-0046470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	10	559	0	ENST00000268712.3:c.59A>C	p.Tyr20Ser	p.Y20S	ENST00000268712	NM_006311.3	20	tAt/tCt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81554312	81554313	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTA			P-0046470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	10	314	0	ENST00000298171.2:c.332_333insTTA	p.Thr111_Arg112insTyr	p.T111_R112insY	ENST00000298171	NM_000369.2	111	acc/acTTAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	178	839	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591118	67591132	+	inframe_deletion	In_Frame_Del	DEL	ATCCAGCTGAGAAAG	ATCCAGCTGAGAAAG	-			P-0046482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	88	334	0	ENST00000274335.5:c.1712_1726del	p.Ile571_Lys575del	p.I571_K575del	ENST00000274335		571	ATCCAGCTGAGAAAG/-																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964493	70964493	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	54	779	1	ENST00000276594.2:c.1535C>A	p.Ser512Tyr	p.S512Y	ENST00000276594	NM_024504.3	512	tCc/tAc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738156	145738156	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0046482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	82	1034	0	ENST00000428558.2:c.2756-2A>G		p.X919_splice	ENST00000428558	NM_004260.3	919																																																																																
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0046485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	512	812	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0046485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	557	605	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0046485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	245	435	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0046485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	91	342	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281904	39281904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs886041241		P-0046485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	315	515	0	ENST00000402219.2:c.571G>A	p.Glu191Lys	p.E191K	ENST00000402219	NM_005633.3	191	Gaa/Aaa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213588	36213588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	265	1103	1	ENST00000222270.7:c.2690C>T	p.Pro897Leu	p.P897L	ENST00000222270	NM_014727.1	897	cCt/cTt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115266523	115266523	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	179	576	0	ENST00000438362.2:c.1992G>T	p.Met664Ile	p.M664I	ENST00000438362	NM_001242891.1	664	atG/atT																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982427	201982427	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0046485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	286	820	0	ENST00000359651.3:c.805+1G>A		p.X269_splice	ENST00000359651		269																																																																																
AURKA	6790	MSKCC	GRCh37	20	54945715	54945715	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0046485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1212	122	609	0	ENST00000312783.6:c.855G>C	p.Arg285Ser	p.R285S	ENST00000312783	NM_198436.1	285	agG/agC																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390161	89390161	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	126	391	0	ENST00000336596.2:c.910T>G	p.Cys304Gly	p.C304G	ENST00000336596	NM_005233.5	304	Tgc/Ggc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921346	178921346	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0046485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	146	527	0	ENST00000263967.3:c.828T>A	p.Cys276Ter	p.C276*	ENST00000263967	NM_006218.2	276	tgT/tgA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0046488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	48	336	1	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0046488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	257	578	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858020	152858020	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	201	374	0	ENST00000406277.2:c.595C>T	p.Gln199Ter	p.Q199*	ENST00000406277	NM_152274.4	199	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	55	353	1	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1222006	1222006	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	49	451	0	ENST00000326873.7:c.920+1G>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																																
IGF1	3479	MSKCC	GRCh37	12	102813300	102813300	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	47	426	0	ENST00000307046.8:c.389C>A	p.Pro130His	p.P130H	ENST00000307046	NM_001111285.1	130	cCc/cAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436014	110436014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	62	662	0	ENST00000375856.3:c.2387G>T	p.Arg796Met	p.R796M	ENST00000375856	NM_003749.2	796	aGg/aTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42059251	42059251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	32	315	0	ENST00000219905.7:c.8971C>T	p.Pro2991Ser	p.P2991S	ENST00000219905	NM_001164273.1	2991	Cct/Tct																																																																															
NUP93	9688	MSKCC	GRCh37	16	56792488	56792488	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	55	438	0	ENST00000308159.5:c.218A>G	p.His73Arg	p.H73R	ENST00000308159	NM_014669.4	73	cAc/cGc																																																																															
ALK	238	MSKCC	GRCh37	2	29474042	29474042	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	59	707	0	ENST00000389048.3:c.2133C>A	p.Ser711Arg	p.S711R	ENST00000389048	NM_004304.4	711	agC/agA																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306656	41306656	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	56	590	0	ENST00000373198.4:c.1003del	p.Ala335GlnfsTer5	p.A335Qfs*5	ENST00000373198	NM_133170.3	335	Gca/ca																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755688	57755688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	74	643	0	ENST00000274289.3:c.99G>T	p.Lys33Asn	p.K33N	ENST00000274289	NM_006622.3	33	aaG/aaT																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729729	41729729	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	57	484	0	ENST00000242208.4:c.800G>T	p.Gly267Val	p.G267V	ENST00000242208	NM_002192.2	267	gGg/gTg																																																																															
SMO	6608	MSKCC	GRCh37	7	128846320	128846320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	51	546	1	ENST00000249373.3:c.1156G>T	p.Val386Leu	p.V386L	ENST00000249373	NM_005631.4	386	Gtg/Ttg																																																																															
TEK	7010	MSKCC	GRCh37	9	27212789	27212789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	63	683	0	ENST00000380036.4:c.2771C>A	p.Pro924Gln	p.P924Q	ENST00000380036	NM_000459.3	924	cCa/cAa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044477	47044477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	49	578	0	ENST00000329236.7:c.1740G>T	p.Trp580Cys	p.W580C	ENST00000329236	NM_001204466.1	580	tgG/tgT																																																																															
BTK	695	MSKCC	GRCh37	X	100630257	100630257	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	45	303	1	ENST00000308731.7:c.16C>A	p.Leu6Met	p.L6M	ENST00000308731	NM_000061.2	6	Ctg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	66	119	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332868	152332868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	69	163	0	ENST00000206249.3:c.1174G>A	p.Val392Ile	p.V392I	ENST00000206249	NM_000125.3	392	Gtc/Atc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139404305	139404305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	83	270	0	ENST00000277541.6:c.2849C>T	p.Ala950Val	p.A950V	ENST00000277541	NM_017617.3	950	gCc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431049	49431049	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	69	243	0	ENST00000301067.7:c.10090C>T	p.Gln3364Ter	p.Q3364*	ENST00000301067	NM_003482.3	3364	Cag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32930748	32930748	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0046515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	89	152	0	ENST00000380152.3:c.7617+2T>A		p.X2539_splice	ENST00000380152		2539																																																																																
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0046546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	180	672	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0046546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	59	494	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0046546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	15	388	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0046546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	38	399	2	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175621	112175621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	32	345	0	ENST00000257430.4:c.4330C>T	p.Gln1444Ter	p.Q1444*	ENST00000257430	NM_000038.5	1444	Caa/Taa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95598962	95598962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	41	383	0	ENST00000343455.3:c.197C>A	p.Thr66Asn	p.T66N	ENST00000343455	NM_177438.2	66	aCt/aAt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799222	88799222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	43	530	0	ENST00000360948.2:c.163C>G	p.Pro55Ala	p.P55A	ENST00000360948	NM_001012338.2	55	Ccc/Gcc																																																																															
TEK	7010	MSKCC	GRCh37	9	27228211	27228211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	62	516	0	ENST00000380036.4:c.3208C>A	p.Leu1070Ile	p.L1070I	ENST00000380036	NM_000459.3	1070	Cta/Ata																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	381	686	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	88	276	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																															
AKT1	207	MSKCC	GRCh37	14	105238778	105238778	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	71	652	0	ENST00000349310.3:c.1184G>T	p.Gly395Val	p.G395V	ENST00000349310	NM_001014432.1	395	gGc/gTc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220269	5220269	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0046547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	225	679	0	ENST00000357368.4:c.3549+2T>A		p.X1183_splice	ENST00000357368	NM_002850.3	1183																																																																																
MSH3	4437	MSKCC	GRCh37	5	79950688	79950688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	146	218	0	ENST00000265081.6:c.142G>T	p.Asp48Tyr	p.D48Y	ENST00000265081	NM_002439.4	48	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0046548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	187	699	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
PIK3C2G	5288	MSKCC	GRCh37	12	18439791	18439791	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	47	341	0	ENST00000266497.5:c.689G>T	p.Cys230Phe	p.C230F	ENST00000266497		230	tGt/tTt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016655	12016655	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	96	380	0	ENST00000353533.5:c.791C>G	p.Ala264Gly	p.A264G	ENST00000353533	NM_003010.3	264	gCt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112175365	112175366	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0046548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	63	282	0	ENST00000257430.4:c.4074_4075del	p.Lys1359IlefsTer15	p.K1359Ifs*15	ENST00000257430	NM_000038.5	1358	gcGAaa/gcaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573478	48573479	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0046552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	67	227	0	ENST00000342988.3:c.63_64del	p.His21GlnfsTer6	p.H21Qfs*6	ENST00000342988	NM_005359.5	21	cAT/c																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134251	11134251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	490	575	1	ENST00000344626.4:c.2917C>T	p.Arg973Trp	p.R973W	ENST00000344626	NM_003072.3	973	Cgg/Tgg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81528563	81528563	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0046552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	49	229	0	ENST00000298171.2:c.242T>G	p.Ile81Ser	p.I81S	ENST00000298171	NM_000369.2	81	aTc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577112	7577113	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0046552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	273	623	0	ENST00000269305.4:c.825_826del	p.Ala276LeufsTer29	p.A276Lfs*29	ENST00000269305	NM_001126112.2	275	tgTGcc/tgcc																																																																															
NF1	4763	MSKCC	GRCh37	17	29562935	29562935	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0046552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	212	359	0	ENST00000358273.4:c.3871-1G>T		p.X1291_splice	ENST00000358273	NM_001042492.2	1291																																																																																
RNF43	54894	MSKCC	GRCh37	17	56492731	56492731	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	450	500	0	ENST00000407977.2:c.208G>C	p.Ala70Pro	p.A70P	ENST00000407977		70	Gct/Cct																																																																															
SRC	6714	MSKCC	GRCh37	20	36031656	36031656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2079	273	744	0	ENST00000358208.4:c.1485C>G	p.His495Gln	p.H495Q	ENST00000358208		495	caC/caG																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323207	31323207	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	44	605	0	ENST00000412585.2:c.782G>C	p.Gly261Ala	p.G261A	ENST00000412585	NM_005514.6	261	gGa/gCa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393591	139393591	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs3812597		P-0046552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	367	748	2	ENST00000277541.6:c.6055G>T	p.Ala2019Ser	p.A2019S	ENST00000277541	NM_017617.3	2019	Gcc/Tcc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982099	201982107	+	frameshift_variant	Frame_Shift_Del	DEL	ACTCCTCAG	ACTCCTCAG	C			P-0046552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	208	625	0	ENST00000359651.3:c.623_631delinsC	p.His208ProfsTer6	p.H208Pfs*6	ENST00000359651		208	cACTCCTCAGac/cCac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0044705-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			777	547	529	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249012	55249013	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGTTT			P-0044705-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			2528	913	557	0	ENST00000275493.2:c.2310_2311insGGGTTT	p.Asp770_Asn771insGlyPhe	p.D770_N771insGF	ENST00000275493	NM_005228.3	770	-/GGGTTT																																																																															
KDM5A	5927	MSKCC	GRCh37	12	419049	419049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044705-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			359	19	315	0	ENST00000399788.2:c.3298G>A	p.Glu1100Lys	p.E1100K	ENST00000399788	NM_001042603.1	1100	Gaa/Aaa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274133	10274133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044705-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			4246	1726	617	1	ENST00000330684.3:c.136G>A	p.Val46Met	p.V46M	ENST00000330684	NM_001134407.1	46	Gtg/Atg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			136	22	391	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572588	64572588	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			174	54	1010	0	ENST00000337652.1:c.1283G>A	p.Trp428Ter	p.W428*	ENST00000337652	NM_130803.2	428	tGg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577537	7577538	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			174	37	912	1	ENST00000269305.4:c.743_744delGGinsAA	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGG/cAA																																																																															
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			236	62	1188	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602692	10602692	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			172	60	1063	1	ENST00000171111.5:c.886del	p.Arg296AlafsTer21	p.R296Afs*21	ENST00000171111	NM_203500.1	296	Cgc/gc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739392	145739392	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	33	984	0	ENST00000428558.2:c.1978G>C	p.Glu660Gln	p.E660Q	ENST00000428558	NM_004260.3	660	Gaa/Caa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859702	151859702	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	20	486	0	ENST00000262189.6:c.10960C>T	p.Gln3654Ter	p.Q3654*	ENST00000262189	NM_170606.2	3654	Caa/Taa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256591	16256591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			126	19	638	0	ENST00000375759.3:c.3856G>A	p.Gly1286Arg	p.G1286R	ENST00000375759	NM_015001.2	1286	Ggg/Agg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3832863	3832863	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			202	20	643	0	ENST00000262367.5:c.1395G>C	p.Gln465His	p.Q465H	ENST00000262367	NM_004380.2	465	caG/caC																																																																															
APC	324	MSKCC	GRCh37	5	112174622	112174622	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			88	12	467	0	ENST00000257430.4:c.3331G>C	p.Glu1111Gln	p.E1111Q	ENST00000257430	NM_000038.5	1111	Gaa/Caa																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665213	138665213	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			233	29	983	1	ENST00000330315.3:c.352G>T	p.Glu118Ter	p.E118*	ENST00000330315	NM_023067.3	118	Gag/Tag																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742942	17742942	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			170	18	816	0	ENST00000250003.3:c.850G>C	p.Glu284Gln	p.E284Q	ENST00000250003	NM_002478.4	284	Gag/Cag																																																																															
CCND1	595	MSKCC	GRCh37	11	69458693	69458693	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			208	73	662	0	ENST00000227507.2:c.508G>C	p.Glu170Gln	p.E170Q	ENST00000227507	NM_053056.2	170	Gag/Cag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865426	57865426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			210	36	1073	1	ENST00000228682.2:c.2903C>T	p.Ser968Leu	p.S968L	ENST00000228682	NM_005269.2	968	tCa/tTa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88726714	88726714	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			135	38	567	0	ENST00000360948.2:c.330C>G	p.Ile110Met	p.I110M	ENST00000360948	NM_001012338.2	110	atC/atG																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348719	11348719	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			228	27	844	0	ENST00000332029.2:c.617C>G	p.Ser206Cys	p.S206C	ENST00000332029	NM_003745.1	206	tCc/tGc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221489	36221489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			323	85	1142	0	ENST00000222270.7:c.5248G>A	p.Glu1750Lys	p.E1750K	ENST00000222270	NM_014727.1	1750	Gag/Aag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526907	31526907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	48	1005	0	ENST00000344624.3:c.133C>T	p.Gln45Ter	p.Q45*	ENST00000344624		45	Cag/Tag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679893	30679910	+	inframe_deletion	In_Frame_Del	DEL	TCTGCCCCAGCATCCCCT	TCTGCCCCAGCATCCCCT	-			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			412	80	616	0	ENST00000376406.3:c.1809_1826del	p.Gly604_Glu609del	p.G604_E609del	ENST00000376406	NM_014641.2	603	gaAGGGGATGCTGGGGCAGAg/gag																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371791	55371791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			105	11	210	0	ENST00000297316.4:c.481G>A	p.Glu161Lys	p.E161K	ENST00000297316	NM_022454.3	161	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0046386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	345	439	2	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441234	52441234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	192	395	0	ENST00000460680.1:c.536G>A	p.Arg179Gln	p.R179Q	ENST00000460680	NM_004656.3	179	cGg/cAg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111501	8111512	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGAATGCCAA	GAGGAATGCCAA	T			P-0046386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	239	582	1	ENST00000346208.3:c.987_998delinsT	p.Arg329SerfsTer19	p.R329Sfs*19	ENST00000346208		329	agGAGGAATGCCAAt/agTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	122	353	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577507	7577507	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	121	561	0	ENST00000269305.4:c.774A>T	p.Glu258Asp	p.E258D	ENST00000269305	NM_001126112.2	258	gaA/gaT																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204938	128204938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	112	723	0	ENST00000341105.2:c.503C>A	p.Ser168Tyr	p.S168Y	ENST00000341105	NM_032638.4	168	tCc/tAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348446	89348446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	134	654	0	ENST00000301030.4:c.4504C>T	p.Pro1502Ser	p.P1502S	ENST00000301030	NM_001256183.1	1502	Ccc/Tcc																																																																															
CASP8	841	MSKCC	GRCh37	2	202131392	202131392	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	35	439	0	ENST00000358485.4:c.360C>A	p.Phe120Leu	p.F120L	ENST00000358485	NM_001080125.1	120	ttC/ttA																																																																															
HGF	3082	MSKCC	GRCh37	7	81334780	81334780	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	59	427	0	ENST00000222390.5:c.1936C>A	p.His646Asn	p.H646N	ENST00000222390	NM_000601.4	646	Cat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0046395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	499	428	12	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0046395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	415	357	3	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0046395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	268	175	5	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347209	347209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	440	502	2	ENST00000262320.3:c.1802C>T	p.Ala601Val	p.A601V	ENST00000262320	NM_003502.3	601	gCg/gTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591826	48591826	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	402	332	6	ENST00000342988.3:c.989A>T	p.Glu330Val	p.E330V	ENST00000342988	NM_005359.5	330	gAa/gTa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434369	121434369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	271	624	0	ENST00000257555.6:c.1133C>A	p.Pro378His	p.P378H	ENST00000257555		378	cCc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578518	7578519	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGTTGG			P-0046395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	588	742	11	ENST00000269305.4:c.405_411dup	p.Ala138ProfsTer13	p.A138Pfs*13	ENST00000269305	NM_001126112.2	137	-/CCAACTG																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259150	89259150	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	124	291	0	ENST00000336596.2:c.294del	p.Glu98AspfsTer16	p.E98Dfs*16	ENST00000336596	NM_005233.5	98	gaG/ga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030201	180030201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	511	493	9	ENST00000261937.6:c.4083C>A	p.Asn1361Lys	p.N1361K	ENST00000261937	NM_182925.4	1361	aaC/aaA																																																																															
SESN1	27244	MSKCC	GRCh37	6	109315788	109315788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	566	452	10	ENST00000436639.2:c.997G>A	p.Glu333Lys	p.E333K	ENST00000436639	NM_014454.2	333	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	34	460	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68995500	68995500	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	32	573	0	ENST00000288368.4:c.1904A>T	p.Lys635Met	p.K635M	ENST00000288368	NM_024870.2	635	aAg/aTg																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366962	40366962	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200396403		P-0046399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	40	669	0	ENST00000397332.2:c.235C>T	p.Pro79Ser	p.P79S	ENST00000397332	NM_001033082.2	79	Ccc/Tcc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914894	32914898	+	frameshift_variant	Frame_Shift_Del	DEL	TAACT	TAACT	-			P-0046399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	12	400	0	ENST00000380152.3:c.6405_6409del	p.Asn2135LysfsTer3	p.N2135Kfs*3	ENST00000380152		2134	aaTAACTta/aata																																																																															
EP300	2033	MSKCC	GRCh37	22	41531828	41531828	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	20	500	0	ENST00000263253.7:c.1540A>T	p.Met514Leu	p.M514L	ENST00000263253	NM_001429.3	514	Atg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0046406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	284	887	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223251	5223251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	224	833	1	ENST00000357368.4:c.2552G>A	p.Arg851His	p.R851H	ENST00000357368	NM_002850.3	851	cGc/cAc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24129420	24129420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	239	444	0	ENST00000263121.7:c.64G>A	p.Asp22Asn	p.D22N	ENST00000263121	NM_003073.3	22	Gac/Aac																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231410	46231410	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	115	386	0	ENST00000334344.6:c.1250C>G	p.Ser417Ter	p.S417*	ENST00000334344	NM_152641.2	417	tCa/tGa																																																																															
FH	2271	MSKCC	GRCh37	1	241665790	241665790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	36	500	1	ENST00000366560.3:c.1189G>A	p.Gly397Arg	p.G397R	ENST00000366560	NM_000143.3	397	Gga/Aga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120942	115120942	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	229	626	0	ENST00000257566.3:c.64C>A	p.Pro22Thr	p.P22T	ENST00000257566	NM_016569.3	22	Cct/Act																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128050360	128050360	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	38	580	0	ENST00000285398.2:c.297C>G	p.Phe99Leu	p.F99L	ENST00000285398	NM_000122.1	99	ttC/ttG																																																																															
NF2	4771	MSKCC	GRCh37	22	30067889	30067889	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	191	659	2	ENST00000338641.4:c.1074G>C	p.Arg358Ser	p.R358S	ENST00000338641	NM_000268.3	358	agG/agC																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748164	41748164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	90	548	0	ENST00000226382.2:c.605C>A	p.Pro202His	p.P202H	ENST00000226382	NM_003924.3	202	cCc/cAc																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27777942	27777942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	111	429	0	ENST00000369163.2:c.91C>T	p.Pro31Ser	p.P31S	ENST00000369163	NM_003536.2	31	Ccg/Tcg																																																																															
HGF	3082	MSKCC	GRCh37	7	81335737	81335737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	42	409	0	ENST00000222390.5:c.1623G>C	p.Leu541Phe	p.L541F	ENST00000222390	NM_000601.4	541	ttG/ttC																																																																															
SMO	6608	MSKCC	GRCh37	7	128845454	128845454	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	170	821	0	ENST00000249373.3:c.751A>G	p.Thr251Ala	p.T251A	ENST00000249373	NM_005631.4	251	Aca/Gca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0046445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	118	494	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936096	178936096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	68	614	0	ENST00000263967.3:c.1638G>T	p.Gln546His	p.Q546H	ENST00000263967	NM_006218.2	546	caG/caT																																																																															
TAP1	6890	MSKCC	GRCh37	6	32813504	32813504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	60	555	1	ENST00000354258.4:c.2279C>T	p.Thr760Ile	p.T760I	ENST00000354258	NM_000593.5	760	aCc/aTc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101904986	101904986	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0046445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	61	279	0	ENST00000374994.4:c.973+1G>T		p.X325_splice	ENST00000374994	NM_004612.2	325																																																																																
CSF1R	1436	MSKCC	GRCh37	5	149460335	149460335	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	28	418	1	ENST00000286301.3:c.302T>C	p.Val101Ala	p.V101A	ENST00000286301	NM_005211.3	101	gTc/gCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			352	135	409	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			329	153	362	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128047034	128047034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			532	217	570	1	ENST00000285398.2:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000285398	NM_000122.1	234	cGa/cAa																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308353	30308353	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			493	190	552	0	ENST00000262643.3:c.367A>G	p.Lys123Glu	p.K123E	ENST00000262643	NM_001238.2	123	Aag/Gag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221996	1221996	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			264	251	646	0	ENST00000326873.7:c.911G>C	p.Arg304Pro	p.R304P	ENST00000326873	NM_000455.4	304	cGg/cCg																																																																															
MPL	4352	MSKCC	GRCh37	1	43812477	43812477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			657	190	493	0	ENST00000372470.3:c.1180C>G	p.Pro394Ala	p.P394A	ENST00000372470	NM_005373.2	394	Cca/Gca																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123256048	123256048	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			431	172	463	0	ENST00000358487.5:c.1861A>T	p.Lys621Ter	p.K621*	ENST00000358487	NM_000141.4	621	Aaa/Taa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279603	123279603	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			520	253	620	0	ENST00000358487.5:c.829G>T	p.Val277Phe	p.V277F	ENST00000358487	NM_000141.4	277	Gtc/Ttc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524625	103524625	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			162	131	296	0	ENST00000355739.4:c.2756G>T	p.Arg919Leu	p.R919L	ENST00000355739	NM_000123.3	919	cGg/cTg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48018107	48018107	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			625	268	617	0	ENST00000234420.5:c.302A>T	p.Glu101Val	p.E101V	ENST00000234420	NM_000179.2	101	gAg/gTg																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271225	26271225	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			401	179	464	0	ENST00000305910.3:c.388C>A	p.Arg130Ser	p.R130S	ENST00000305910	NM_003534.2	130	Cgc/Agc																																																																															
TCEB1	6921	MSKCC	GRCh37	8	74868211	74868211	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1635	135	215	0	ENST00000284811.8:c.83A>C	p.Glu28Ala	p.E28A	ENST00000284811		28	gAa/gCa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400076	139400076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			673	285	796	0	ENST00000277541.6:c.4272G>T	p.Leu1424Phe	p.L1424F	ENST00000277541	NM_017617.3	1424	ttG/ttT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103804	47103804	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0043860-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			839	359	509	0	ENST00000409792.3:c.6142A>T	p.Arg2048Ter	p.R2048*	ENST00000409792	NM_014159.6	2048	Aga/Tga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47142950	47142951	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0043860-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			540	172	341	0	ENST00000409792.3:c.5012_5013del	p.Tyr1671TrpfsTer40	p.Y1671Wfs*40	ENST00000409792	NM_014159.6	1671	tAT/t																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0045856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			454	14	288	1	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931589		P-0045856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			362	137	303	0	ENST00000349496.5:c.101G>A	p.Gly34Glu	p.G34E	ENST00000349496	NM_001904.3	34	gGa/gAa																																																																															
STK40	83931	MSKCC	GRCh37	1	36821031	36821031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			539	185	527	0	ENST00000373129.3:c.346C>T	p.Arg116Cys	p.R116C	ENST00000373129	NM_032017.1	116	Cgc/Tgc																																																																															
RB1	5925	MSKCC	GRCh37	13	49030394	49030394	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			37	242	275	0	ENST00000267163.4:c.1870del	p.Ser624LeufsTer19	p.S624Lfs*19	ENST00000267163	NM_000321.2	623	aaT/aa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151843698	151843698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	22	365	0	ENST00000262189.6:c.14017C>T	p.Arg4673Cys	p.R4673C	ENST00000262189	NM_170606.2	4673	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874661	151874662	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0045856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	278	384	0	ENST00000262189.6:c.7876_7877del	p.Glu2626ThrfsTer30	p.E2626Tfs*30	ENST00000262189	NM_170606.2	2626	GAa/a																																																																															
ATM	472	MSKCC	GRCh37	11	108203487	108203487	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0046177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			75	185	130	0	ENST00000278616.4:c.7789-2A>T		p.X2597_splice	ENST00000278616	NM_000051.3	2597																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			357	453	410	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1222987	1222987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			228	517	618	0	ENST00000326873.7:c.924G>T	p.Trp308Cys	p.W308C	ENST00000326873	NM_000455.4	308	tgG/tgT																																																																															
STK11	6794	MSKCC	GRCh37	19	1222992	1222992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	532	633	0	ENST00000326873.7:c.929G>T	p.Arg310Leu	p.R310L	ENST00000326873	NM_000455.4	310	cGg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944448	40944448	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			679	199	592	0	ENST00000373198.4:c.2054A>G	p.Lys685Arg	p.K685R	ENST00000373198	NM_133170.3	685	aAg/aGg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480428	89480428	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	148	385	0	ENST00000336596.2:c.2265C>G	p.Asn755Lys	p.N755K	ENST00000336596	NM_005233.5	755	aaC/aaG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0046200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	156	485	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627837	14627837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	341	658	0	ENST00000254322.2:c.233G>A	p.Ser78Asn	p.S78N	ENST00000254322	NM_006145.1	78	aGt/aAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	509	275	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	638	739	2	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	671	820	0	ENST00000171111.5:c.1085G>C	p.Arg362Pro	p.R362P	ENST00000171111	NM_203500.1	362	cGg/cCg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	202	370	0	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag																																																																															
STAT3	6774	MSKCC	GRCh37	17	40481581	40481581	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	960	459	0	ENST00000264657.5:c.1224C>G	p.Phe408Leu	p.F408L	ENST00000264657	NM_139276.2	408	ttC/ttG																																																																															
STK11	6794	MSKCC	GRCh37	19	1220415	1220415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	771	720	0	ENST00000326873.7:c.508C>T	p.Gln170Ter	p.Q170*	ENST00000326873	NM_000455.4	170	Cag/Tag																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87563465	87563465	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs202136187		P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	298	500	0	ENST00000277120.3:c.1853A>G	p.Lys618Arg	p.K618R	ENST00000277120		618	aAg/aGg																																																																															
ATRX	546	MSKCC	GRCh37	X	76812962	76812962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	450	169	1	ENST00000373344.5:c.6659C>T	p.Ser2220Leu	p.S2220L	ENST00000373344	NM_000489.3	2220	tCa/tTa																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156693	20156693	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	143	192	0	ENST00000379607.5:c.64G>C	p.Glu22Gln	p.E22Q	ENST00000379607	NM_001412.3	22	Gaa/Caa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876425	35876425	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	389	586	0	ENST00000303115.3:c.1217T>G	p.Leu406Arg	p.L406R	ENST00000303115	NM_002185.3	406	cTt/cGt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858336	9858336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	507	365	1	ENST00000330684.3:c.3065G>A	p.Arg1022His	p.R1022H	ENST00000330684	NM_001134407.1	1022	cGc/cAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523600	106523600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	506	203	0	ENST00000359195.3:c.2752G>A	p.Glu918Lys	p.E918K	ENST00000359195	NM_002649.2	918	Gaa/Aaa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953016	2953016	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	324	718	0	ENST00000396946.4:c.2924G>T	p.Arg975Leu	p.R975L	ENST00000396946	NM_032415.4	975	cGg/cTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045491	47045491	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	650	276	0	ENST00000329236.7:c.2224G>T	p.Glu742Ter	p.E742*	ENST00000329236	NM_001204466.1	742	Gaa/Taa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629391	187629391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	373	564	1	ENST00000441802.2:c.1591C>T	p.Pro531Ser	p.P531S	ENST00000441802	NM_005245.3	531	Cct/Tct																																																																															
TET1	80312	MSKCC	GRCh37	10	70442602	70442602	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	454	350	0	ENST00000373644.4:c.4924G>C	p.Glu1642Gln	p.E1642Q	ENST00000373644	NM_030625.2	1642	Gaa/Caa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89725089	89725089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	90	82	0	ENST00000371953.3:c.1072G>A	p.Glu358Lys	p.E358K	ENST00000371953	NM_000314.4	358	Gag/Aag																																																																															
PGR	5241	MSKCC	GRCh37	11	100996845	100996845	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	1053	411	0	ENST00000325455.5:c.1682C>A	p.Ser561Ter	p.S561*	ENST00000325455	NM_001202474.3	561	tCa/tAa																																																																															
ATM	472	MSKCC	GRCh37	11	108117762	108117762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			13	366	184	0	ENST00000278616.4:c.973C>T	p.His325Tyr	p.H325Y	ENST00000278616	NM_000051.3	325	Cat/Tat																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18544088	18544088	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	259	209	0	ENST00000266497.5:c.1905G>C	p.Met635Ile	p.M635I	ENST00000266497		635	atG/atC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445505	49445505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1529	386	603	0	ENST00000301067.7:c.1961C>T	p.Ser654Phe	p.S654F	ENST00000301067	NM_003482.3	654	tCc/tTc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95596463	95596463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	116	242	0	ENST00000343455.3:c.505A>G	p.Ile169Val	p.I169V	ENST00000343455	NM_177438.2	169	Att/Gtt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032002	10032002	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	397	580	0	ENST00000330684.3:c.821C>G	p.Ser274Trp	p.S274W	ENST00000330684	NM_001134407.1	274	tCg/tGg																																																																															
RARA	5914	MSKCC	GRCh37	17	38512384	38512384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	212	434	3	ENST00000254066.5:c.1295G>A	p.Arg432Gln	p.R432Q	ENST00000254066	NM_000964.3	432	cGg/cAg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017155	31017155	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	105	219	0	ENST00000375687.4:c.486G>C	p.Lys162Asn	p.K162N	ENST00000375687	NM_015338.5	162	aaG/aaC																																																																															
MYD88	4615	MSKCC	GRCh37	3	38180244	38180244	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1173	1116	680	0	ENST00000396334.3:c.92C>G	p.Ser31Cys	p.S31C	ENST00000396334	NM_002468.4	31	tCc/tGc																																																																															
MYD88	4615	MSKCC	GRCh37	3	38180445	38180445	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	1281	620	0	ENST00000396334.3:c.293C>G	p.Ser98Cys	p.S98C	ENST00000396334	NM_002468.4	98	tCt/tGt																																																																															
TET2	54790	MSKCC	GRCh37	4	106155979	106155979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	338	244	1	ENST00000380013.4:c.880G>A	p.Glu294Lys	p.E294K	ENST00000380013	NM_001127208.2	294	Gag/Aag																																																																															
TET2	54790	MSKCC	GRCh37	4	106162579	106162579	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	149	182	0	ENST00000380013.4:c.3493G>T	p.Glu1165Ter	p.E1165*	ENST00000380013	NM_001127208.2	1165	Gaa/Taa																																																																															
TET2	54790	MSKCC	GRCh37	4	106196946	106196946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	131	166	0	ENST00000380013.4:c.5279C>T	p.Ser1760Phe	p.S1760F	ENST00000380013	NM_001127208.2	1760	tCt/tTt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143159120	143159120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	99	274	0	ENST00000262992.4:c.733G>A	p.Asp245Asn	p.D245N	ENST00000262992	NM_001101669.1	245	Gac/Aac																																																																															
NSD1	64324	MSKCC	GRCh37	5	176719030	176719030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	158	242	0	ENST00000439151.2:c.6334G>A	p.Glu2112Lys	p.E2112K	ENST00000439151	NM_022455.4	2112	Gaa/Aaa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032008	26032008	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	354	375	0	ENST00000244661.2:c.281A>C	p.Gln94Pro	p.Q94P	ENST00000244661	NM_003537.3	94	cAg/cCg																																																																															
HGF	3082	MSKCC	GRCh37	7	81392114	81392114	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	326	214	0	ENST00000222390.5:c.163C>G	p.Pro55Ala	p.P55A	ENST00000222390	NM_000601.4	55	Cca/Gca																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156740	20156740	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	103	127	0	ENST00000379607.5:c.17G>C	p.Gly6Ala	p.G6A	ENST00000379607	NM_001412.3	6	gGt/gCt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0046209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	164	505	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221743	55221743	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	167	496	0	ENST00000275493.2:c.787A>C	p.Thr263Pro	p.T263P	ENST00000275493	NM_005228.3	263	Acc/Ccc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56477640	56477640	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	284	537	0	ENST00000267101.3:c.188T>C	p.Leu63Pro	p.L63P	ENST00000267101	NM_001982.3	63	cTt/cCt																																																																															
TERT	7015	MSKCC	GRCh37	5	1293592	1293592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	24	843	0	ENST00000310581.5:c.1409G>A	p.Arg470His	p.R470H	ENST00000310581	NM_198253.2	470	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574026	7574026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	46	680	0	ENST00000269305.4:c.1001G>T	p.Gly334Val	p.G334V	ENST00000269305	NM_001126112.2	334	gGg/gTg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5044464	5044464	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	22	445	1	ENST00000381652.3:c.412C>T	p.Arg138Ter	p.R138*	ENST00000381652	NM_004972.3	138	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224198	36224198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	136	607	0	ENST00000222270.7:c.6748C>T	p.Arg2250Cys	p.R2250C	ENST00000222270	NM_014727.1	2250	Cgc/Tgc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78426120	78426120	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	40	491	1	ENST00000370768.2:c.1405del	p.His469MetfsTer196	p.H469Mfs*196	ENST00000370768	NM_003902.3	469	Cat/at																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518439	204518439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	14	374	0	ENST00000367182.3:c.1102G>T	p.Ala368Ser	p.A368S	ENST00000367182	NM_001278516.1	368	Gct/Tct																																																																															
TET1	80312	MSKCC	GRCh37	10	70432693	70432693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	16	391	0	ENST00000373644.4:c.4715G>T	p.Gly1572Val	p.G1572V	ENST00000373644	NM_030625.2	1572	gGa/gTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425773	49425773	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	46	757	0	ENST00000301067.7:c.12715C>T	p.Gln4239Ter	p.Q4239*	ENST00000301067	NM_003482.3	4239	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438279	49438279	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	61	640	0	ENST00000301067.7:c.4990del	p.Ile1664LeufsTer58	p.I1664Lfs*58	ENST00000301067	NM_003482.3	1664	Att/tt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288487	15288487	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	17	219	0	ENST00000263388.2:c.4252T>C	p.Ser1418Pro	p.S1418P	ENST00000263388	NM_000435.2	1418	Tcg/Ccg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665553	138665553	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	40	311	0	ENST00000330315.3:c.12C>A	p.Ser4Arg	p.S4R	ENST00000330315	NM_023067.3	4	agC/agA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630068	187630068	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	35	592	0	ENST00000441802.2:c.914C>A	p.Thr305Lys	p.T305K	ENST00000441802	NM_005245.3	305	aCa/aAa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396929	139396929	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	34	337	0	ENST00000277541.6:c.5179G>T	p.Glu1727Ter	p.E1727*	ENST00000277541	NM_017617.3	1727	Gag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187554978	187554979	+	splice_acceptor_variant	Splice_Site	DEL	CT	CT	A			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	18	295	0	ENST00000441802.2:c.4184-2_4184-1delinsT		p.X1395_splice	ENST00000441802	NM_005245.3	1395																																																																																
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	88	744	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
RB1	5925	MSKCC	GRCh37	13	49037866	49037866	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	42	135	0	ENST00000267163.4:c.2107-1G>C		p.X703_splice	ENST00000267163	NM_000321.2	703																																																																																
BCOR	54880	MSKCC	GRCh37	X	39934105	39934105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	35	267	0	ENST00000378444.4:c.494C>T	p.Ala165Val	p.A165V	ENST00000378444	NM_001123385.1	165	gCg/gTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866609	37866609	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	74	608	0	ENST00000269571.5:c.776A>G	p.Asn259Ser	p.N259S	ENST00000269571		259	aAc/aGc																																																																															
STK11	6794	MSKCC	GRCh37	19	1218414	1218414	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	64	487	1	ENST00000326873.7:c.291-2A>T		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																																
RECQL	5965	MSKCC	GRCh37	12	21627910	21627910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	29	336	0	ENST00000421138.2:c.1220G>A	p.Arg407Gln	p.R407Q	ENST00000421138		407	cGa/cAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859627	151859627	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	13	411	0	ENST00000262189.6:c.11035G>T	p.Glu3679Ter	p.E3679*	ENST00000262189	NM_170606.2	3679	Gaa/Taa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16264425	16264425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	36	679	1	ENST00000375759.3:c.10628G>T	p.Gly3543Val	p.G3543V	ENST00000375759	NM_015001.2	3543	gGa/gTa																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39325150	39325150	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	62	555	0	ENST00000373001.3:c.169G>T	p.Ala57Ser	p.A57S	ENST00000373001	NM_022157.3	57	Gct/Tct																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123258030	123258030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	13	442	0	ENST00000358487.5:c.1651C>T	p.Leu551Phe	p.L551F	ENST00000358487	NM_000141.4	551	Ctt/Ttt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230547	46230548	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	35	349	0	ENST00000334344.6:c.799dup	p.Glu267GlyfsTer13	p.E267Gfs*13	ENST00000334344	NM_152641.2	266	tgg/tGgg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748855	43748856	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AT			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	94	630	0	ENST00000382044.4:c.1950_1951delinsAT	p.Glu651Ter	p.E651*	ENST00000382044	NM_001141980.1	650	gaGGaa/gaATaa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498525	89498526	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	50	227	0	ENST00000336596.2:c.2496+2dup		p.X832_splice	ENST00000336596	NM_005233.5	832																																																																																
SOX2	6657	MSKCC	GRCh37	3	181430957	181430961	+	frameshift_variant	Frame_Shift_Del	DEL	TCCGG	TCCGG	-			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	50	737	0	ENST00000325404.1:c.809_813del	p.Leu270ArgfsTer38	p.L270Rfs*38	ENST00000325404	NM_003106.3	270	cTCCGG/c																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67590496	67590496	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	31	167	0	ENST00000274335.5:c.1558G>C	p.Glu520Gln	p.E520Q	ENST00000274335		520	Gaa/Caa																																																																															
PARK2	5071	MSKCC	GRCh37	6	161970008	161970008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	14	630	0	ENST00000366898.1:c.961G>A	p.Glu321Lys	p.E321K	ENST00000366898	NM_004562.2	321	Gag/Aag																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250103	110250103	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	70	681	0	ENST00000374672.4:c.572A>G	p.Asn191Ser	p.N191S	ENST00000374672	NM_004235.4	191	aAc/aGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	58	389	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
INHA	3623	MSKCC	GRCh37	2	220437227	220437227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	79	887	1	ENST00000243786.2:c.131C>A	p.Pro44His	p.P44H	ENST00000243786	NM_002191.3	44	cCc/cAc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741539	17741539	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	50	359	0	ENST00000250003.3:c.210C>A	p.His70Gln	p.H70Q	ENST00000250003	NM_002478.4	70	caC/caA																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112919968	112919968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	55	516	0	ENST00000351677.2:c.1183G>T	p.Asp395Tyr	p.D395Y	ENST00000351677	NM_002834.3	395	Gac/Tac																																																																															
POLE	5426	MSKCC	GRCh37	12	133201382	133201382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	76	711	0	ENST00000320574.5:c.6762G>T	p.Gln2254His	p.Q2254H	ENST00000320574	NM_006231.2	2254	caG/caT																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103510680	103510680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	30	294	2	ENST00000355739.4:c.584G>T	p.Ser195Ile	p.S195I	ENST00000355739	NM_000123.3	195	aGc/aTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29588745	29588745	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	42	253	0	ENST00000358273.4:c.4595del	p.Gly1532GlufsTer42	p.G1532Efs*42	ENST00000358273	NM_001042492.2	1532	Gga/ga																																																																															
NF1	4763	MSKCC	GRCh37	17	29679433	29679433	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0046220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	55	297	0	ENST00000358273.4:c.7615+1G>T		p.X2539_splice	ENST00000358273	NM_001042492.2	2539																																																																																
CUL3	8452	MSKCC	GRCh37	2	225379489	225379489	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0046220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	28	302	0	ENST00000264414.4:c.379G>T	p.Asp127Tyr	p.D127Y	ENST00000264414	NM_003590.4	127	Gac/Tac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385147	41385147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	68	768	0	ENST00000373198.4:c.814G>A	p.Asp272Asn	p.D272N	ENST00000373198	NM_133170.3	272	Gat/Aat																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225692	26225692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	148	671	0	ENST00000360408.1:c.310C>A	p.Leu104Ile	p.L104I	ENST00000360408	NM_003532.2	104	Ctt/Att																																																																															
MET	4233	MSKCC	GRCh37	7	116339203	116339203	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	68	331	1	ENST00000397752.3:c.65G>T	p.Ser22Ile	p.S22I	ENST00000397752	NM_000245.2	22	aGc/aTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465477	8465477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	18	339	0	ENST00000356435.5:c.3703C>T	p.His1235Tyr	p.H1235Y	ENST00000356435		1235	Cat/Tat																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98218611	98218611	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	90	498	1	ENST00000331920.6:c.3253A>T	p.Ile1085Phe	p.I1085F	ENST00000331920	NM_000264.3	1085	Atc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0046221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	184	183	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1202793339		P-0046221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	215	671	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114920398	114920398	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	212	390	0	ENST00000543371.1:c.1339T>G	p.Cys447Gly	p.C447G	ENST00000543371	NM_001198531.1	447	Tgt/Ggt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	48	234	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027494	48027494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	56	255	0	ENST00000234420.5:c.2372G>A	p.Arg791His	p.R791H	ENST00000234420	NM_000179.2	791	cGt/cAt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339111	65339111	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	91	385	2	ENST00000342505.4:c.425delA	p.Lys142ArgfsTer26	p.K142Rfs*26	ENST00000342505	NM_002227.2	142	aAg/ag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789591	3789591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	30	350	2	ENST00000262367.5:c.4268delC	p.Pro1423LeufsTer36	p.P1423Lfs*36	ENST00000262367	NM_004380.2	1423	cCt/ct																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874637	35874637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	65	287	0	ENST00000303115.3:c.799del	p.Arg267GlyfsTer28	p.R267Gfs*28	ENST00000303115	NM_002185.3	265	Aaa/aa																																																																															
B2M	567	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	25	148	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
CBFB	865	MSKCC	GRCh37	16	67063358	67063359	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	75	274	0	ENST00000412916.2:c.54dupT	p.Arg19Ter	p.R19*	ENST00000412916		16	-/T																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495415	56495415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	123	606	0	ENST00000267101.3:c.3605G>A	p.Arg1202Gln	p.R1202Q	ENST00000267101	NM_001982.3	1202	cGg/cAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771831816		P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	80	380	0	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																															
B2M	567	MSKCC	GRCh37	15	45007689	45007690	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	78	200	0	ENST00000558401.1:c.137_138del	p.Tyr46CysfsTer10	p.Y46Cfs*10	ENST00000558401	NM_004048.2	46	TAt/t																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264985	46264985	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	33	333	0	ENST00000371998.3:c.1860del	p.Lys620AsnfsTer18	p.K620Nfs*18	ENST00000371998		619	Aaa/aa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	76	340	0	ENST00000359013.4:c.1657C>A	p.Arg553Ser	p.R553S	ENST00000359013	NM_001024847.2	553	Cgt/Agt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	122	519	2	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788618	3788618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	76	317	0	ENST00000262367.5:c.4336C>A	p.Arg1446Ser	p.R1446S	ENST00000262367	NM_004380.2	1446	Cgc/Agc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119794	70119794	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	121	586	0	ENST00000245479.2:c.800del	p.Pro267LeufsTer12	p.P267Lfs*12	ENST00000245479	NM_000346.3	266	Ccc/cc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188297	32188297	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	132	730	1	ENST00000375023.3:c.1044del	p.Gly349AlafsTer49	p.G349Afs*49	ENST00000375023	NM_004557.3	348	ggC/gg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273944	10273944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	167	782	0	ENST00000330684.3:c.325G>A	p.Val109Ile	p.V109I	ENST00000330684	NM_001134407.1	109	Gta/Ata																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	103	350	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	209	764	13	ENST00000294008.3:c.1406delC	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214398	36214398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs868041281		P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	49	511	0	ENST00000222270.7:c.3057del	p.Gly1020AlafsTer4	p.G1020Afs*4	ENST00000222270	NM_014727.1	1018	Aaa/aa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	123	508	5	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323315	31323315	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	83	420	0	ENST00000412585.2:c.674T>G	p.Leu225Arg	p.L225R	ENST00000412585	NM_005514.6	225	cTg/cGg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663295	227663295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	40	478	3	ENST00000305123.5:c.160C>T	p.Arg54Trp	p.R54W	ENST00000305123	NM_005544.2	54	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216188	36216188	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	52	617	1	ENST00000222270.7:c.3596G>C	p.Gly1199Ala	p.G1199A	ENST00000222270	NM_014727.1	1199	gGc/gCc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258894	16258894	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	47	543	3	ENST00000375759.3:c.6164delC	p.Pro2055LeufsTer9	p.P2055Lfs*9	ENST00000375759	NM_015001.2	2053	aaC/aa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295278	1295278	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	111	455	2				ENST00000310581	NM_198253.2																																																																																	
TSC2	7249	MSKCC	GRCh37	16	2136269	2136269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	147	666	0	ENST00000219476.3:c.4738C>T	p.Arg1580Trp	p.R1580W	ENST00000219476	NM_000548.3	1580	Cgg/Tgg																																																																															
LMO1	4004	MSKCC	GRCh37	11	8252034	8252034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	106	559	0	ENST00000335790.3:c.43G>A	p.Val15Ile	p.V15I	ENST00000335790	NM_002315.2	15	Gtc/Atc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58677990	58677990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	56	213	0	ENST00000305921.3:c.215C>T	p.Ala72Val	p.A72V	ENST00000305921	NM_003620.3	72	gCc/gTc																																																																															
ATRX	546	MSKCC	GRCh37	X	76939697	76939697	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	71	409	0	ENST00000373344.5:c.1051G>T	p.Glu351Ter	p.E351*	ENST00000373344	NM_000489.3	351	Gag/Tag																																																																															
STK40	83931	MSKCC	GRCh37	1	36807448	36807448	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	55	645	0	ENST00000373129.3:c.1216A>G	p.Ser406Gly	p.S406G	ENST00000373129	NM_032017.1	406	Agc/Ggc																																																																															
JUN	3725	MSKCC	GRCh37	1	59248325	59248325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	24	183	0	ENST00000371222.2:c.418G>A	p.Ala140Thr	p.A140T	ENST00000371222	NM_002228.3	140	Gca/Aca																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138107	64138107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	41	658	0	ENST00000334205.4:c.2030G>A	p.Gly677Asp	p.G677D	ENST00000334205	NM_003942.2	677	gGc/gAc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577292	64577292	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	125	668	0	ENST00000337652.1:c.290T>C	p.Ile97Thr	p.I97T	ENST00000337652	NM_130803.2	97	aTc/aCc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941409	71941409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	117	634	0	ENST00000298229.2:c.1094G>A	p.Arg365His	p.R365H	ENST00000298229	NM_001567.3	365	cGc/cAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118377187	118377187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	94	337	0	ENST00000534358.1:c.10580G>A	p.Arg3527Gln	p.R3527Q	ENST00000534358	NM_005933.3	3527	cGg/cAg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118392843	118392843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	37	379	1	ENST00000534358.1:c.11875C>T	p.Pro3959Ser	p.P3959S	ENST00000534358	NM_005933.3	3959	Ccc/Tcc																																																																															
RB1	5925	MSKCC	GRCh37	13	48955558	48955558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	14	164	0	ENST00000267163.4:c.1674G>A	p.Met558Ile	p.M558I	ENST00000267163	NM_000321.2	558	atG/atA																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828234	72828234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	115	546	0	ENST00000268489.5:c.8347G>A	p.Val2783Ile	p.V2783I	ENST00000268489	NM_006885.3	2783	Gtc/Atc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214668	5214668	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	120	714	0	ENST00000357368.4:c.4398del	p.Pro1467ArgfsTer23	p.P1467Rfs*23	ENST00000357368	NM_002850.3	1466	ggG/gg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36215543	36215543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	59	630	0	ENST00000222270.7:c.3340C>A	p.Pro1114Thr	p.P1114T	ENST00000222270	NM_014727.1	1114	Cca/Aca																																																																															
CASP8	841	MSKCC	GRCh37	2	202137387	202137387	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	55	231	0	ENST00000358485.4:c.616del	p.Glu206ArgfsTer14	p.E206Rfs*14	ENST00000358485	NM_001080125.1	205	atG/at																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62305301	62305301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	57	747	0	ENST00000508582.2:c.846G>A	p.Met282Ile	p.M282I	ENST00000508582		282	atG/atA																																																																															
EP300	2033	MSKCC	GRCh37	22	41574852	41574852	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	114	511	0	ENST00000263253.7:c.7137T>A	p.Asn2379Lys	p.N2379K	ENST00000263253	NM_001429.3	2379	aaT/aaA																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626352	12626352	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	69	440	0	ENST00000251849.4:c.1797delT	p.Gln601ArgfsTer39	p.Q601Rfs*39	ENST00000251849	NM_002880.3	599	ttT/tt																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799655	72799655	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	108	518	0	ENST00000325599.8:c.1514T>C	p.Val505Ala	p.V505A	ENST00000325599	NM_018130.2	505	gTt/gCt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946360	2946360	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	64	769	0	ENST00000396946.4:c.3377del	p.Gly1126AlafsTer3	p.G1126Afs*3	ENST00000396946	NM_032415.4	1126	gGc/gc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739593	41739593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	22	303	0	ENST00000242208.4:c.380C>T	p.Ala127Val	p.A127V	ENST00000242208	NM_002192.2	127	gCc/gTc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5089816	5089816	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	20	212	0	ENST00000381652.3:c.2714T>C	p.Leu905Pro	p.L905P	ENST00000381652	NM_004972.3	905	cTa/cCa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411771	63411772	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	154	713	0	ENST00000330258.3:c.1395dup	p.Asn466GlnfsTer2	p.N466Qfs*2	ENST00000330258	NM_152424.3	465	-/C																																																																															
TP53	7157	MSKCC	GRCh37	17	7576870	7576870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs876659384		P-0046230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	79	606	0	ENST00000269305.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000269305	NM_001126112.2	326	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0046230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	80	451	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214592	5214592	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369295620		P-0046230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	86	628	0	ENST00000357368.4:c.4474C>T	p.Arg1492Trp	p.R1492W	ENST00000357368	NM_002850.3	1492	Cgg/Tgg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044723	47044723	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	110	410	0	ENST00000329236.7:c.1889del	p.His630ProfsTer94	p.H630Pfs*94	ENST00000329236	NM_001204466.1	630	cAc/cc																																																																															
APC	324	MSKCC	GRCh37	5	112151282	112151282	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	27	230	3	ENST00000257430.4:c.925G>T	p.Gly309Ter	p.G309*	ENST00000257430	NM_000038.5	309	Gga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	124	641	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604789	48604789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	45	351	0	ENST00000342988.3:c.1611C>G	p.Asp537Glu	p.D537E	ENST00000342988	NM_005359.5	537	gaC/gaG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0046238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	44	383	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26974623	26974623	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	32	411	0	ENST00000381527.3:c.967C>T	p.Arg323Ter	p.R323*	ENST00000381527	NM_001260.1	323	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175725	112175748	+	frameshift_variant	Frame_Shift_Del	DEL	GGTCCAGGTTCTTCCAGATGCTGA	GGTCCAGGTTCTTCCAGATGCTGA	CATT			P-0046238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	17	309	0	ENST00000257430.4:c.4434_4457delinsCATT	p.Arg1478SerfsTer29	p.R1478Sfs*29	ENST00000257430	NM_000038.5	1478	agGGTCCAGGTTCTTCCAGATGCTGAt/agCATTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0046240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	83	311	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0046240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	167	614	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971196	21971198	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0046240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	95	358	0	ENST00000304494.5:c.160_162delATG	p.Met54del	p.M54del	ENST00000304494	NM_000077.4	54	ATG/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0046242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	178	675	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0046242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	75	316	1	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112175788	112175788	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	78	275	1	ENST00000257430.4:c.4497delA	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1499	ggA/gg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245380	153245380	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	267	409	5	ENST00000281708.4:c.1811A>C	p.Lys604Thr	p.K604T	ENST00000281708	NM_033632.3	604	aAa/aCa																																																																															
APC	324	MSKCC	GRCh37	5	112173912	112173912	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	86	300	1	ENST00000257430.4:c.2621C>A	p.Ser874Ter	p.S874*	ENST00000257430	NM_000038.5	874	tCa/tAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828694	72828694	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	66	664	1	ENST00000268489.5:c.7887C>A	p.Asn2629Lys	p.N2629K	ENST00000268489	NM_006885.3	2629	aaC/aaA																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390150	89390150	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	45	315	0	ENST00000336596.2:c.899G>T	p.Gly300Val	p.G300V	ENST00000336596	NM_005233.5	300	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112102108	112102108	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0046242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	52	122	1	ENST00000257430.4:c.220+1G>T		p.X74_splice	ENST00000257430	NM_000038.5	74																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	84	450	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0046244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	88	384	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745588	162745588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	43	558	0	ENST00000367921.3:c.2003G>A	p.Arg668His	p.R668H	ENST00000367921	NM_006182.2	668	cGc/cAc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99478103	99478103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	92	582	0	ENST00000268035.6:c.3007C>T	p.Arg1003Trp	p.R1003W	ENST00000268035	NM_000875.3	1003	Cgg/Tgg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26101054	26101054	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	191	1055	0	ENST00000435504.4:c.38G>T	p.Trp13Leu	p.W13L	ENST00000435504		13	tGg/tTg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265508	152265508	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	172	681	0	ENST00000206249.3:c.961G>C	p.Asp321His	p.D321H	ENST00000206249	NM_000125.3	321	Gat/Cat																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411185	63411185	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	163	486	0	ENST00000330258.3:c.1982del	p.Pro661HisfsTer3	p.P661Hfs*3	ENST00000330258	NM_152424.3	661	cCa/ca																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115843	8115844	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	237	557	0	ENST00000346208.3:c.1191dupC	p.Arg398GlnfsTer109	p.R398Qfs*109	ENST00000346208		397	tcc/tCcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	77	360	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	143	770	0	ENST00000269305.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000269305	NM_001126112.2	105	Ggc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229189	36229189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	197	636	0	ENST00000222270.7:c.7879G>A	p.Gly2627Arg	p.G2627R	ENST00000222270	NM_014727.1	2627	Ggg/Agg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0046252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	38	419	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0046252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	48	504	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119884	70119884	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	105	664	0	ENST00000245479.2:c.886C>T	p.Gln296Ter	p.Q296*	ENST00000245479	NM_000346.3	296	Cag/Tag																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589622	67589624	+	inframe_deletion	In_Frame_Del	DEL	AAT	AAT	-			P-0046252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	22	218	0	ENST00000274335.5:c.1386_1388del	p.Glu462_Tyr463delinsAsp	p.E462_Y463delinsD	ENST00000274335		462	gAATat/gat																																																																															
RASA1	5921	MSKCC	GRCh37	5	86629108	86629108	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	22	273	0	ENST00000274376.6:c.853C>T	p.Arg285Ter	p.R285*	ENST00000274376	NM_002890.2	285	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175640	112175640	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	57	321	0	ENST00000257430.4:c.4349del	p.Arg1450GlnfsTer23	p.R1450Qfs*23	ENST00000257430	NM_000038.5	1450	cGa/ca																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593557	48593557	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0046252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	33	167	0	ENST00000342988.3:c.1308G>C	p.Lys436Asn	p.K436N	ENST00000342988	NM_005359.5	436	aaG/aaC																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944877	31944877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	83	440	0	ENST00000340398.3:c.224C>T	p.Ala75Val	p.A75V	ENST00000340398	NM_001013699.2	75	gCg/gTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117687	70117688	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTGTT			P-0046252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	134	923	0	ENST00000245479.2:c.157_158insGTTGT	p.Phe53CysfsTer10	p.F53Cfs*10	ENST00000245479	NM_000346.3	52	acg/acGTGTTg																																																																															
APC	324	MSKCC	GRCh37	5	112162932	112162933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	40	318	0	ENST00000257430.4:c.1537dup	p.Val513GlyfsTer24	p.V513Gfs*24	ENST00000257430	NM_000038.5	512	-/G																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0046259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	92	361	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0046259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	94	222	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0046259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	268	738	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	52	233	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
CBL	867	MSKCC	GRCh37	11	119168095	119168095	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	87	416	0	ENST00000264033.4:c.2155G>A	p.Ala719Thr	p.A719T	ENST00000264033	NM_005188.3	719	Gca/Aca																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998890	11998890	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0046259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	40	202	0	ENST00000353533.5:c.394-2A>T		p.X132_splice	ENST00000353533	NM_003010.3	132																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0046261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	364	571	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32915007	32915007	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	187	381	0	ENST00000380152.3:c.6515C>G	p.Ser2172Ter	p.S2172*	ENST00000380152		2172	tCa/tGa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934864	9934864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	114	450	0	ENST00000330684.3:c.1426G>T	p.Asp476Tyr	p.D476Y	ENST00000330684	NM_001134407.1	476	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577495	7577553	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGACCTGGAGTCTTCCAGTGTGATGATGGTGAGGATGGGCCTCCGGTTCATGCCGCCCA	TGACCTGGAGTCTTCCAGTGTGATGATGGTGAGGATGGGCCTCCGGTTCATGCCGCCCA	-			P-0046261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	104	766	0	ENST00000269305.4:c.728_782+4del		p.X243_splice	ENST00000269305	NM_001126112.2	243																																																																																
RPTOR	57521	MSKCC	GRCh37	17	78933877	78933877	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0046261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	159	661	0	ENST00000306801.3:c.3478-1G>A		p.X1160_splice	ENST00000306801	NM_020761.2	1160																																																																																
PAK7	57144	MSKCC	GRCh37	20	9547031	9547031	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0046261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	71	237	0	ENST00000353224.5:c.991G>T	p.Val331Leu	p.V331L	ENST00000353224	NM_177990.2	331	Gtg/Ttg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5055717	5055720	+	frameshift_variant	Frame_Shift_Del	DEL	AAGC	AAGC	-			P-0046261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	68	261	0	ENST00000381652.3:c.991_994del	p.Ala331ThrfsTer11	p.A331Tfs*11	ENST00000381652	NM_004972.3	329	AAGCaa/aa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	244	437	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28597502	28597502	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	65	392	0	ENST00000241453.7:c.2403T>G	p.Phe801Leu	p.F801L	ENST00000241453	NM_004119.2	801	ttT/ttG																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151917764	151917764	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	113	70	1	ENST00000262189.6:c.3556C>T	p.Gln1186Ter	p.Q1186*	ENST00000262189	NM_170606.2	1186	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	91	434	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0046267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	98	813	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138516	11138516	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	93	748	0	ENST00000344626.4:c.3272A>G	p.Lys1091Arg	p.K1091R	ENST00000344626	NM_003072.3	1091	aAa/aGa																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505634	186505635	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0046267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	81	316	0	ENST00000323963.5:c.1043_1044del	p.Tyr348Ter	p.Y348*	ENST00000323963		348	TAt/t																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859205	151859206	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0046267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	23	356	0	ENST00000262189.6:c.11456_11457del	p.Gly3819AlafsTer26	p.G3819Afs*26	ENST00000262189	NM_170606.2	3819	gGA/g																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873378	151873396	+	frameshift_variant	Frame_Shift_Del	DEL	GTAGAGGCTGTTCTTCTAG	GTAGAGGCTGTTCTTCTAG	-			P-0046267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	62	372	0	ENST00000262189.6:c.9142_9160del	p.Leu3048PhefsTer22	p.L3048Ffs*22	ENST00000262189	NM_170606.2	3048	CTAGAAGAACAGCCTCTACtt/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0046270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	57	376	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057835	27057835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	58	891	0	ENST00000324856.7:c.1543C>T	p.Gln515Ter	p.Q515*	ENST00000324856	NM_006015.4	515	Cag/Tag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508535	106508535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	37	398	0	ENST00000359195.3:c.529C>T	p.Arg177Cys	p.R177C	ENST00000359195	NM_002649.2	177	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0046270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	83	625	0	ENST00000269305.4:c.993+2T>C		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
IRS2	8660	MSKCC	GRCh37	13	110434488	110434488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	83	676	1	ENST00000375856.3:c.3913G>A	p.Gly1305Arg	p.G1305R	ENST00000375856	NM_003749.2	1305	Ggg/Agg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929124	44929124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	55	577	0	ENST00000377967.4:c.2224G>A	p.Ala742Thr	p.A742T	ENST00000377967	NM_021140.2	742	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579336	7579336	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	211	654	0	ENST00000269305.4:c.351delG	p.Thr118GlnfsTer5	p.T118Qfs*5	ENST00000269305	NM_001126112.2	117	ggG/gg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662735	117662735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	66	316	0	ENST00000368508.3:c.4730C>A	p.Ser1577Tyr	p.S1577Y	ENST00000368508	NM_002944.2	1577	tCt/tAt																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967099	18967099	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	186	728	1	ENST00000262803.5:c.1814A>T	p.Glu605Val	p.E605V	ENST00000262803	NM_002911.3	605	gAg/gTg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1918623	1918623	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0046273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	123	348	0	ENST00000382891.5:c.786T>A	p.Tyr262Ter	p.Y262*	ENST00000382891	NM_133335.3	262	taT/taA																																																																															
PRDM1	639	MSKCC	GRCh37	6	106554342	106554342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	106	376	0	ENST00000369096.4:c.1870G>T	p.Val624Leu	p.V624L	ENST00000369096	NM_001198.3	624	Gta/Tta																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163819	152163819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	118	401	0	ENST00000206249.3:c.540G>T	p.Lys180Asn	p.K180N	ENST00000206249	NM_000125.3	180	aaG/aaT																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	62	490	0	ENST00000250448.2:c.781C>G	p.Arg261Gly	p.R261G	ENST00000250448	NM_004496.3	261	Cgc/Ggc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618596	37618606	+	frameshift_variant	Frame_Shift_Del	DEL	TAGACCGAAGG	TAGACCGAAGG	-			P-0046276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	133	491	0	ENST00000447079.4:c.272_282del	p.Leu91ArgfsTer32	p.L91Rfs*32	ENST00000447079	NM_015083.1	91	cTAGACCGAAGG/c																																																																															
FANCC	2176	MSKCC	GRCh37	9	97912245	97912247	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0046276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	35	498	0	ENST00000289081.3:c.644_646del	p.Leu215del	p.L215del	ENST00000289081	NM_000136.2	215	cTCCag/cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	410	367	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0046277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	221	815	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097705	27097706	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0046277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	88	489	0	ENST00000324856.7:c.3296_3297del	p.Cys1099SerfsTer5	p.C1099Sfs*5	ENST00000324856	NM_006015.4	1098	caGTgt/cagt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106566	27106566	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	227	768	0	ENST00000324856.7:c.6177del	p.Asn2059LysfsTer76	p.N2059Kfs*76	ENST00000324856	NM_006015.4	2059	aaC/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	62	294	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577122	+	missense_variant	Missense_Mutation	DNP	GC	GC	CT			P-0046279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	67	591	0	ENST00000269305.4:c.816_817delinsAG	p.Arg273Gly	p.R273G	ENST00000269305	NM_001126112.2	272	gtGCgt/gtAGgt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16001787	16001787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	51	313	0	ENST00000268712.3:c.2714C>A	p.Pro905His	p.P905H	ENST00000268712	NM_006311.3	905	cCt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603013	48603014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	34	223	0	ENST00000342988.3:c.1315dup	p.Asp439GlyfsTer55	p.D439Gfs*55	ENST00000342988	NM_005359.5	438	-/G																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163924	47163931	+	frameshift_variant	Frame_Shift_Del	DEL	ATCATCCA	ATCATCCA	-			P-0046279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	33	284	0	ENST00000409792.3:c.2195_2202del	p.Leu732TyrfsTer6	p.L732Yfs*6	ENST00000409792	NM_014159.6	732	tTGGATGAT/t																																																																															
MET	4233	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0046288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	320	526	0	ENST00000397752.3:c.3028+2T>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
TP53	7157	MSKCC	GRCh37	17	7579337	7579338	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGAATG			P-0046288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	162	722	0	ENST00000269305.4:c.343_349dup	p.Gly117AlafsTer34	p.G117Afs*34	ENST00000269305	NM_001126112.2	117	ggg/gCATTCTGgg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119634894	119634894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	69	182	0	ENST00000316626.5:c.605G>A	p.Gly202Glu	p.G202E	ENST00000316626		202	gGa/gAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241659	55241659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	84	700	0	ENST00000275493.2:c.2107C>T	p.Leu703Phe	p.L703F	ENST00000275493	NM_005228.3	703	Ctc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0046289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	537	820	1	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120483366	120483366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	45	297	0	ENST00000256646.2:c.2995G>T	p.Gly999Cys	p.G999C	ENST00000256646	NM_024408.3	999	Ggt/Tgt																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186503986	186503986	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	49	232	0	ENST00000323963.5:c.551A>G	p.Glu184Gly	p.E184G	ENST00000323963		184	gAa/gGa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149456975	149456975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	86	462	0	ENST00000286301.3:c.753C>A	p.Asp251Glu	p.D251E	ENST00000286301	NM_005211.3	251	gaC/gaA																																																																															
SETD2	29072	MSKCC	GRCh37	3	47144882	47144882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	13	500	0	ENST00000409792.3:c.4871C>T	p.Ser1624Phe	p.S1624F	ENST00000409792	NM_014159.6	1624	tCt/tTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161906	47161907	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	11	472	1	ENST00000409792.3:c.4219dup	p.Arg1407LysfsTer8	p.R1407Kfs*8	ENST00000409792	NM_014159.6	1407	agg/aAgg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577477	64577576	+	frameshift_variant	Frame_Shift_Del	DEL	CACCAGGTCCGGCTCCTCTCGGCCCAGCTCGGCAGCAAACAGGCGCACCACGTCGTCGATGGAGCGCAGCGGGAACAGCGTCTTCTGGGCGGCCTTCAGC	CACCAGGTCCGGCTCCTCTCGGCCCAGCTCGGCAGCAAACAGGCGCACCACGTCGTCGATGGAGCGCAGCGGGAACAGCGTCTTCTGGGCGGCCTTCAGC	-			P-0046290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	58	766	0	ENST00000337652.1:c.6_105del	p.Leu3SerfsTer83	p.L3Sfs*83	ENST00000337652	NM_130803.2	2	ggGCTGAAGGCCGCCCAGAAGACGCTGTTCCCGCTGCGCTCCATCGACGACGTGGTGCGCCTGTTTGCTGCCGAGCTGGGCCGAGAGGAGCCGGACCTGGTG/gg																																																																															
ATRX	546	MSKCC	GRCh37	X	76912095	76912095	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	47	239	0	ENST00000373344.5:c.4169del	p.Ser1390MetfsTer100	p.S1390Mfs*100	ENST00000373344	NM_000489.3	1390	aGt/at																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687049	37687049	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs151051059		P-0046297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	323	523	0	ENST00000447079.4:c.3953A>G	p.His1318Arg	p.H1318R	ENST00000447079	NM_015083.1	1318	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	8	369	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0046299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	21	811	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0046299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	12	385	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153244091	153244091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	10	387	1	ENST00000281708.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000281708	NM_033632.3	689	cGg/cAg																																																																															
SESN1	27244	MSKCC	GRCh37	6	109311998	109311998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	21	355	0	ENST00000436639.2:c.1274G>A	p.Arg425His	p.R425H	ENST00000436639	NM_014454.2	425	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	58	875	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637423	47637423	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	27	482	0	ENST00000233146.2:c.557A>T	p.Asn186Ile	p.N186I	ENST00000233146	NM_000251.2	186	aAt/aTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	316	401	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518099	8518099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	88	450	0	ENST00000356435.5:c.1292C>T	p.Ser431Leu	p.S431L	ENST00000356435		431	tCg/tTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55961104	55961104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	400	599	0	ENST00000263923.4:c.2836C>T	p.Arg946Cys	p.R946C	ENST00000263923	NM_002253.2	946	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175548	112175548	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	121	290	0	ENST00000257430.4:c.4260delC	p.Ser1421ValfsTer52	p.S1421Vfs*52	ENST00000257430	NM_000038.5	1419	agC/ag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217842	2217842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	168	638	0	ENST00000398665.3:c.2616C>A	p.Ser872Arg	p.S872R	ENST00000398665	NM_032482.2	872	agC/agA																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71161705	71161705	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	44	315	0	ENST00000318789.4:c.264C>G	p.Asp88Glu	p.D88E	ENST00000318789	NM_032682.5	88	gaC/gaG																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561423	9561423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201131316		P-0042212-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	58	350	0	ENST00000353224.5:c.359C>T	p.Ala120Val	p.A120V	ENST00000353224	NM_177990.2	120	gCg/gTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207168	1207168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042212-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	115	648	0	ENST00000326873.7:c.256C>T	p.Arg86Ter	p.R86*	ENST00000326873	NM_000455.4	86	Cga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485280	8485280	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042212-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			141	36	368	0	ENST00000356435.5:c.3100G>T	p.Val1034Leu	p.V1034L	ENST00000356435		1034	Gtg/Ttg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730099	41730099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042212-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			207	41	353	0	ENST00000242208.4:c.430G>T	p.Gly144Cys	p.G144C	ENST00000242208	NM_002192.2	144	Ggc/Tgc																																																																															
NF1	4763	MSKCC	GRCh37	17	29528428	29528428	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0042212-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			133	43	231	0	ENST00000358273.4:c.1186-1G>T		p.X396_splice	ENST00000358273	NM_001042492.2	396																																																																																
NF1	4763	MSKCC	GRCh37	17	29553614	29553615	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0042212-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			209	57	279	0	ENST00000358273.4:c.2166_2167dup	p.Val723GlyfsTer26	p.V723Gfs*26	ENST00000358273	NM_001042492.2	721	-/GG																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610498	10610498	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042212-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			307	91	580	0	ENST00000171111.5:c.212G>C	p.Arg71Pro	p.R71P	ENST00000171111	NM_203500.1	71	cGg/cCg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280753	41280753	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042212-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			261	86	378	0	ENST00000349496.5:c.2266C>G	p.Leu756Val	p.L756V	ENST00000349496	NM_001904.3	756	Ctg/Gtg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680620	30680620	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042212-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			287	66	420	0	ENST00000376406.3:c.1099G>T	p.Ala367Ser	p.A367S	ENST00000376406	NM_014641.2	367	Gcc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	35	349	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	102	645	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72163823	72163823	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0045968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	28	192	0	ENST00000357731.5:c.536-1G>A		p.X179_splice	ENST00000357731	NM_173808.2	179																																																																																
PDGFRA	5156	MSKCC	GRCh37	4	55144096	55144096	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	61	335	0	ENST00000257290.5:c.1925T>C	p.Met642Thr	p.M642T	ENST00000257290	NM_006206.4	642	aTg/aCg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44936025	44936027	+	frameshift_variant	Frame_Shift_Del	DEL	CTC	CTC	GA			P-0045968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	47	436	0	ENST00000377967.4:c.2786_2788delinsGA	p.Pro929ArgfsTer8	p.P929Rfs*8	ENST00000377967	NM_021140.2	929	cCTCcc/cGAcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0046154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	74	343	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0046154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	148	612	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	130	473	0	ENST00000361445.4:c.5930C>T	p.Thr1977Ile	p.T1977I	ENST00000361445	NM_004958.3	1977	aCa/aTa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	278	376	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175101	112175101	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	19	139	0	ENST00000257430.4:c.3814del	p.Ser1272GlnfsTer16	p.S1272Qfs*16	ENST00000257430	NM_000038.5	1270	tgT/tg																																																																															
APC	324	MSKCC	GRCh37	5	112175908	112175908	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	29	175	0	ENST00000257430.4:c.4617del	p.Glu1540SerfsTer25	p.E1540Sfs*25	ENST00000257430	NM_000038.5	1539	tcA/tc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104356987	104356987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	192	652	1	ENST00000369902.3:c.847G>A	p.Glu283Lys	p.E283K	ENST00000369902	NM_016169.3	283	Gag/Aag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246191	46246191	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	48	335	0	ENST00000334344.6:c.4285A>T	p.Ser1429Cys	p.S1429C	ENST00000334344	NM_152641.2	1429	Agc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575096	48575096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	41	306	0	ENST00000342988.3:c.290G>T	p.Arg97Leu	p.R97L	ENST00000342988	NM_005359.5	97	cGt/cTt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591136	67591137	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAG			P-0046154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	46	280	0	ENST00000274335.5:c.1730_1732dup	p.Arg577_Asp578insGly	p.R577_D578insG	ENST00000274335		577	aga/aGAGga																																																																															
PMS2	5395	MSKCC	GRCh37	7	6031609	6031609	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	25	189	0	ENST00000265849.7:c.983A>T	p.Asp328Val	p.D328V	ENST00000265849	NM_000535.5	328	gAt/gTt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879885	37879885	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	126	675	0	ENST00000269571.5:c.2180G>C	p.Gly727Ala	p.G727A	ENST00000269571		727	gGa/gCa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0031916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	78	318	0	ENST00000269571.5:c.2305G>C	p.Asp769His	p.D769H	ENST00000269571		769	Gac/Cac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221846	55221846	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0031916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	182	673	1	ENST00000275493.2:c.889+1G>A		p.X297_splice	ENST00000275493	NM_005228.3	297																																																																																
PRDM14	63978	MSKCC	GRCh37	8	70964415	70964415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	115	392	1	ENST00000276594.2:c.1613G>A	p.Arg538His	p.R538H	ENST00000276594	NM_024504.3	538	cGt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426223	49426223	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	134	742	0	ENST00000301067.7:c.12265C>G	p.Leu4089Val	p.L4089V	ENST00000301067	NM_003482.3	4089	Ctg/Gtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0042033-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			821	110	605	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0042033-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			422	73	270	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610337	10610337	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042033-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			632	196	875	0	ENST00000171111.5:c.373A>T	p.Ile125Phe	p.I125F	ENST00000171111	NM_203500.1	125	Att/Ttt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907161	101907161	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042033-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			213	38	242	0	ENST00000374994.4:c.1121G>C	p.Gly374Ala	p.G374A	ENST00000374994	NM_004612.2	374	gGa/gCa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123895	46123896	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0042033-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			288	29	176	0	ENST00000334344.6:c.161_162del	p.Val54AspfsTer11	p.V54Dfs*11	ENST00000334344	NM_152641.2	54	gTC/g																																																																															
WT1	7490	MSKCC	GRCh37	11	32438063	32438063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042033-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			533	85	465	0	ENST00000332351.3:c.974C>T	p.Ser325Leu	p.S325L	ENST00000332351	NM_024426.4	325	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577604	7577616	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCAACCTAGGAGA	CCAACCTAGGAGA	-			P-0042033-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			354	123	432	0	ENST00000269305.4:c.673-8_677del		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0044706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			255	76	531	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
ATM	472	MSKCC	GRCh37	11	108180982	108180982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			102	70	236	0	ENST00000278616.4:c.5858C>T	p.Thr1953Ile	p.T1953I	ENST00000278616	NM_000051.3	1953	aCa/aTa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266714	198266714	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			332	91	501	0	ENST00000335508.6:c.2218G>C	p.Gly740Arg	p.G740R	ENST00000335508	NM_012433.2	740	Gga/Cga																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982355	201982355	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			923	342	518	0	ENST00000359651.3:c.734G>T	p.Arg245Leu	p.R245L	ENST00000359651		245	cGg/cTg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99456505	99456505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			238	40	261	0	ENST00000268035.6:c.1822G>A	p.Ala608Thr	p.A608T	ENST00000268035	NM_000875.3	608	Gct/Act																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641183	3641183	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			861	157	509	0	ENST00000294008.3:c.2456T>C	p.Leu819Ser	p.L819S	ENST00000294008	NM_032444.2	819	tTg/tCg																																																																															
HGF	3082	MSKCC	GRCh37	7	81381551	81381551	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			223	62	327	0	ENST00000222390.5:c.510A>T	p.Lys170Asn	p.K170N	ENST00000222390	NM_000601.4	170	aaA/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			115	388	512	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114682	73114682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			366	358	321	0	ENST00000356692.5:c.1063G>A	p.Glu355Lys	p.E355K	ENST00000356692		355	Gag/Aag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972633	25972633	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			320	129	316	0	ENST00000435504.4:c.1792C>G	p.Gln598Glu	p.Q598E	ENST00000435504		598	Cag/Gag																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984428	201984428	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			542	689	503	0	ENST00000359651.3:c.1093G>T	p.Glu365Ter	p.E365*	ENST00000359651		365	Gag/Tag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513224	106513224	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			264	91	260	0	ENST00000359195.3:c.2128C>T	p.Gln710Ter	p.Q710*	ENST00000359195	NM_002649.2	710	Cag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32968832	32968832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			132	60	161	0	ENST00000380152.3:c.9266del	p.Pro3089LeufsTer15	p.P3089Lfs*15	ENST00000380152		3088	gCc/gc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027697	48027697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			204	82	187	0	ENST00000234420.5:c.2575C>T	p.Leu859Phe	p.L859F	ENST00000234420	NM_000179.2	859	Ctt/Ttt																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45799185	45799185	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			549	221	516	0	ENST00000372115.3:c.206C>G	p.Ser69Ter	p.S69*	ENST00000372115	NM_001048171.1	69	tCa/tGa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233186	46233186	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			63	307	248	0	ENST00000334344.6:c.1405G>T	p.Glu469Ter	p.E469*	ENST00000334344	NM_152641.2	469	Gaa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427871	49427871	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			464	250	503	0	ENST00000301067.7:c.10719G>C	p.Lys3573Asn	p.K3573N	ENST00000301067	NM_003482.3	3573	aaG/aaC																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514958	103514958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			166	92	226	0	ENST00000355739.4:c.1459C>T	p.Pro487Ser	p.P487S	ENST00000355739	NM_000123.3	487	Ccg/Tcg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39249766	39249766	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			409	148	322	0	ENST00000402219.2:c.1803C>G	p.Ile601Met	p.I601M	ENST00000402219	NM_005633.3	601	atC/atG																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62319885	62319885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1706	573	696	1	ENST00000508582.2:c.1799G>T	p.Arg600Leu	p.R600L	ENST00000508582		600	cGc/cTc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871249	12871249	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0045750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	55	137	0	ENST00000228872.4:c.475+1G>A		p.X159_splice	ENST00000228872	NM_004064.3	159																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56161655	56161655	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0045750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	112	325	0	ENST00000399503.3:c.1153-1G>C		p.X385_splice	ENST00000399503	NM_005921.1	385																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56178673	56178674	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCATC			P-0045750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	53	154	0	ENST00000399503.3:c.3647_3651dup	p.Ile1218SerfsTer29	p.I1218Sfs*29	ENST00000399503	NM_005921.1	1216	atc/aTCATCtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	11	515	0	ENST00000269305.4:c.711G>C	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	48	418	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0045922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	86	450	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0045922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	54	371	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807820	3807820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	33	413	0	ENST00000262367.5:c.3599G>A	p.Cys1200Tyr	p.C1200Y	ENST00000262367	NM_004380.2	1200	tGt/tAt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176105664	176105664	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	43	355	0	ENST00000367669.3:c.851A>G	p.Lys284Arg	p.K284R	ENST00000367669	NM_022457.5	284	aAg/aGg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244172	46244172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	40	377	0	ENST00000334344.6:c.2266G>A	p.Val756Ile	p.V756I	ENST00000334344	NM_152641.2	756	Gtt/Att																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14028114	14028114	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	43	360	1	ENST00000311895.7:c.1168G>T	p.Glu390Ter	p.E390*	ENST00000311895	NM_005236.2	390	Gaa/Taa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23649267	23649267	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	43	372	0	ENST00000261584.4:c.115C>A	p.Gln39Lys	p.Q39K	ENST00000261584	NM_024675.3	39	Caa/Aaa																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42860405	42860405	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199865751		P-0045922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	103	625	2	ENST00000398585.3:c.472G>A	p.Asp158Asn	p.D158N	ENST00000398585	NM_001135099.1	158	Gac/Aac																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670328	134670328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	46	397	0	ENST00000398015.3:c.239G>A	p.Arg80Gln	p.R80Q	ENST00000398015	NM_004441.4	80	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951911	178951911	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	66	409	0	ENST00000263967.3:c.2966T>G	p.Leu989Arg	p.L989R	ENST00000263967	NM_006218.2	989	cTa/cGa																																																																															
APC	324	MSKCC	GRCh37	5	112175475	112175475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	80	377	0	ENST00000257430.4:c.4184del	p.Ser1395IlefsTer20	p.S1395Ifs*20	ENST00000257430	NM_000038.5	1395	aGt/at																																																																															
MET	4233	MSKCC	GRCh37	7	116411884	116411893	+	intron_variant	Intron	DEL	TCTTTCTCTC	TCTTTCTCTC	-			P-0045946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	98	616	0	ENST00000397752.3:c.2888-18_2888-9delCTTTCTCTCT		p.*963*	ENST00000397752	NM_000245.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0045948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	111	631	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
EP300	2033	MSKCC	GRCh37	22	41556722	41556722	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	21	233	0	ENST00000263253.7:c.3667C>T	p.Gln1223Ter	p.Q1223*	ENST00000263253	NM_001429.3	1223	Caa/Taa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89869669	89869669	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0045948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	75	431	0	ENST00000389301.3:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000389301	NM_000135.2	264	Cag/Tag																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873387	136873387	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	39	291	0	ENST00000241393.3:c.111T>A	p.Asn37Lys	p.N37K	ENST00000241393	NM_003467.2	37	aaT/aaA																																																																															
MET	4233	MSKCC	GRCh37	7	116340177	116340177	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	27	184	0	ENST00000397752.3:c.1039G>T	p.Ala347Ser	p.A347S	ENST00000397752	NM_000245.2	347	Gca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0045952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	151	472	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0045952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	242	409	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
NBN	4683	MSKCC	GRCh37	8	90971041	90971041	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200297914		P-0045952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	65	245	0	ENST00000265433.3:c.1036G>A	p.Val346Met	p.V346M	ENST00000265433	NM_002485.4	346	Gtg/Atg																																																																															
WT1	7490	MSKCC	GRCh37	11	32410611	32410611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	93	380	0	ENST00000332351.3:c.1547C>T	p.Ala516Val	p.A516V	ENST00000332351	NM_024426.4	516	gCg/gTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971178	21971178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	118	336	0	ENST00000361570.3:c.346G>A	p.Gly116Arg	p.G116R	ENST00000361570	NM_058195.3	116	Gga/Aga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2131740	2131740	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	197	635	2	ENST00000219476.3:c.3755C>A	p.Ser1252Ter	p.S1252*	ENST00000219476	NM_000548.3	1252	tCa/tAa																																																																															
TERT	7015	MSKCC	GRCh37	5	1294420	1294420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	266	477	0	ENST00000310581.5:c.581G>A	p.Arg194Gln	p.R194Q	ENST00000310581	NM_198253.2	194	cGa/cAa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0045957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	276	649	0	ENST00000269571.5:c.2331_2339dupGGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																																																															
HGF	3082	MSKCC	GRCh37	7	81372707	81372707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	76	259	0	ENST00000222390.5:c.827C>A	p.Pro276His	p.P276H	ENST00000222390	NM_000601.4	276	cCt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577065	7577065	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	279	604	0	ENST00000269305.4:c.873del	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	291	aaG/aa																																																																															
RET	5979	MSKCC	GRCh37	10	43610123	43610123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	180	547	0	ENST00000355710.3:c.2075C>A	p.Ala692Asp	p.A692D	ENST00000355710	NM_020975.4	692	gCc/gAc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515212	31515212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	383	619	0	ENST00000344624.3:c.1173G>T	p.Glu391Asp	p.E391D	ENST00000344624		391	gaG/gaT																																																																															
HGF	3082	MSKCC	GRCh37	7	81392049	81392049	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	37	215	0	ENST00000222390.5:c.228G>T	p.Arg76Ser	p.R76S	ENST00000222390	NM_000601.4	76	agG/agT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0045959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	126	518	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0045959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	66	418	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428299	33428299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	98	482	0	ENST00000335858.7:c.488G>A	p.Arg163Gln	p.R163Q	ENST00000335858	NM_133629.2	163	cGg/cAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653807	89653807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	71	244	0	ENST00000371953.3:c.105G>A	p.Met35Ile	p.M35I	ENST00000371953	NM_000314.4	35	atG/atA																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368258	45368258	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	76	343	0	ENST00000262160.6:c.1344G>A	p.Trp448Ter	p.W448*	ENST00000262160	NM_005901.5	448	tgG/tgA																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	55	200	0	ENST00000281708.4:c.1634A>T	p.Tyr545Phe	p.Y545F	ENST00000281708	NM_033632.3	545	tAt/tTt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191157	185191157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	71	462	1	ENST00000265026.3:c.2038C>T	p.Arg680Trp	p.R680W	ENST00000265026	NM_004721.4	680	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112173817	112173820	+	frameshift_variant	Frame_Shift_Del	DEL	TAGT	TAGT	-			P-0045959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	50	276	0	ENST00000257430.4:c.2527_2530del	p.Ser843LeufsTer17	p.S843Lfs*17	ENST00000257430	NM_000038.5	842	gaTAGT/ga																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226252110	226252110	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	15	59	0	ENST00000366813.1:c.58C>G	p.Gln20Glu	p.Q20E	ENST00000366813		20	Caa/Gaa																																																																															
APC	324	MSKCC	GRCh37	5	112175770	112175771	+	frameshift_variant	Frame_Shift_Ins	INS	GG	GG	AGA			P-0045959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	39	250	0	ENST00000257430.4:c.4479_4480delinsAGA	p.Ser1495LysfsTer19	p.S1495Kfs*19	ENST00000257430	NM_000038.5	1493	acGGaa/acAGAaa																																																																															
BRAF	673	MSKCC	GRCh37	7	140477789	140477790	+	splice_donor_variant	Splice_Site	INS	-	-	CCTGAGTAC			P-0045959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	58	345	0	ENST00000288602.6:c.1510_1517+1dup		p.X504_splice	ENST00000288602	NM_004333.4	504																																																																																
STK11	6794	MSKCC	GRCh37	19	1220715	1220715	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0045964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	58	543	0	ENST00000326873.7:c.733C>T	p.Leu245Phe	p.L245F	ENST00000326873	NM_000455.4	245	Ctc/Ttc																																																																															
APC	324	MSKCC	GRCh37	5	112175621	112175621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	36	320	0	ENST00000257430.4:c.4330C>T	p.Gln1444Ter	p.Q1444*	ENST00000257430	NM_000038.5	1444	Caa/Taa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162725522	162725522	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	36	428	0	ENST00000367921.3:c.634C>G	p.Leu212Val	p.L212V	ENST00000367921	NM_006182.2	212	Ctg/Gtg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575505	64575505	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	63	565	1	ENST00000337652.1:c.527G>T	p.Arg176Leu	p.R176L	ENST00000337652	NM_130803.2	176	cGg/cTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221981	1221981	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	63	604	1	ENST00000326873.7:c.896C>G	p.Ser299Cys	p.S299C	ENST00000326873	NM_000455.4	299	tCc/tGc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138551	11138551	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	64	565	0	ENST00000344626.4:c.3307T>C	p.Cys1103Arg	p.C1103R	ENST00000344626	NM_003072.3	1103	Tgc/Cgc																																																																															
ALK	238	MSKCC	GRCh37	2	29917722	29917722	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	56	554	0	ENST00000389048.3:c.946C>A	p.Pro316Thr	p.P316T	ENST00000389048	NM_004304.4	316	Ccc/Acc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437884	110437884	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	15	88	1	ENST00000375856.3:c.517G>T	p.Gly173Cys	p.G173C	ENST00000375856	NM_003749.2	173	Ggc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0045970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	14	284	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0045970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	8	575	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225338994	225338994	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	10	349	0	ENST00000264414.4:c.2275G>T	p.Glu759Ter	p.E759*	ENST00000264414	NM_003590.4	759	Gag/Tag																																																																															
CD79B	974	MSKCC	GRCh37	17	62007581	62007581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	39	581	0	ENST00000392795.3:c.286C>T	p.Arg96Cys	p.R96C	ENST00000392795	NM_001039933.1	96	Cgc/Tgc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46254677	46254677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	17	336	0	ENST00000334344.6:c.4867G>C	p.Asp1623His	p.D1623H	ENST00000334344	NM_152641.2	1623	Gat/Cat																																																																															
NF1	4763	MSKCC	GRCh37	17	29482999	29482999	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0045970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	16	211	0	ENST00000358273.4:c.61-2A>T		p.X21_splice	ENST00000358273	NM_001042492.2	21																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11101982	11101982	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	49	589	0	ENST00000344626.4:c.1402C>A	p.Arg468Ser	p.R468S	ENST00000344626	NM_003072.3	468	Cgc/Agc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25458655	25458655	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	32	476	0	ENST00000264709.3:c.2518A>G	p.Ile840Val	p.I840V	ENST00000264709	NM_175629.2	840	Ata/Gta																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873633	35873633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	14	228	0	ENST00000303115.3:c.589C>A	p.Pro197Thr	p.P197T	ENST00000303115	NM_002185.3	197	Ccg/Acg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180638	32180638	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	43	499	0	ENST00000375023.3:c.2489G>C	p.Cys830Ser	p.C830S	ENST00000375023	NM_004557.3	830	tGc/tCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	77	281	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0045971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	91	525	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575080	48575080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	37	214	0	ENST00000342988.3:c.274C>T	p.His92Tyr	p.H92Y	ENST00000342988	NM_005359.5	92	Cat/Tat																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464983	120464983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	37	307	0	ENST00000256646.2:c.5089G>A	p.Val1697Ile	p.V1697I	ENST00000256646	NM_024408.3	1697	Gta/Ata																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445824	49445825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	228	594	0	ENST00000301067.7:c.1641dup	p.Pro548ThrfsTer3	p.P548Tfs*3	ENST00000301067	NM_003482.3	547	-/A																																																																															
POLE	5426	MSKCC	GRCh37	12	133263883	133263883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	44	228	0	ENST00000320574.5:c.19G>A	p.Gly7Arg	p.G7R	ENST00000320574	NM_006231.2	7	Ggg/Agg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45657020	45657020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	59	361	0	ENST00000407780.3:c.136G>A	p.Asp46Asn	p.D46N	ENST00000407780	NM_001283052.1	46	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112175513	112175514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	149	258	0	ENST00000257430.4:c.4224dup	p.Pro1409ThrfsTer14	p.P1409Tfs*14	ENST00000257430	NM_000038.5	1408	gaa/gAaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928223	178928225	+	missense_variant	Missense_Mutation	ONP	CTC	CTC	TTT			P-0045971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	90	287	0	ENST00000263967.3:c.1409_1411delinsTTT	p.Thr470_Pro471delinsIleSer	p.T470_P471delinsIS	ENST00000263967	NM_006218.2	470	aCTCca/aTTTca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0045972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	95	459	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0045972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	82	565	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
POLE	5426	MSKCC	GRCh37	12	133257747	133257747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	21	438	1	ENST00000320574.5:c.181G>A	p.Gly61Ser	p.G61S	ENST00000320574	NM_006231.2	61	Ggc/Agc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99486220	99486220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	22	558	0	ENST00000268035.6:c.3526G>T	p.Val1176Leu	p.V1176L	ENST00000268035	NM_000875.3	1176	Gtg/Ttg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210809	2210809	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	46	412	0	ENST00000398665.3:c.1306C>A	p.Leu436Met	p.L436M	ENST00000398665	NM_032482.2	436	Ctg/Atg																																																																															
BRAF	673	MSKCC	GRCh37	7	140550012	140550012	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0045972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	39	230	0	ENST00000288602.6:c.139G>C	p.Val47Leu	p.V47L	ENST00000288602	NM_004333.4	47	Gtg/Ctg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	211	681	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175240	112175240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	48	201	0	ENST00000257430.4:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000257430	NM_000038.5	1317	Gaa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29527614	29527614	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0045983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	116	380	0	ENST00000358273.4:c.1062+1G>A		p.X354_splice	ENST00000358273	NM_001042492.2	354																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118370594	118370594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	33	201	0	ENST00000534358.1:c.6124G>A	p.Asp2042Asn	p.D2042N	ENST00000534358	NM_005933.3	2042	Gac/Aac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968954	15968967	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGGGTAACCTGG	CTTGGGTAACCTGG	-			P-0045983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	97	423	0	ENST00000268712.3:c.4783_4796del	p.Pro1595SerfsTer17	p.P1595Sfs*17	ENST00000268712	NM_006311.3	1595	CCAGGTTACCCAAGt/t																																																																															
BCL6	604	MSKCC	GRCh37	3	187449641	187449641	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	83	363	0	ENST00000232014.4:c.239del	p.Pro80LeufsTer26	p.P80Lfs*26	ENST00000232014	NM_001130845.1	80	cCt/ct																																																																															
SPEN	23013	MSKCC	GRCh37	1	16242758	16242758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	179	391	0	ENST00000375759.3:c.1379G>A	p.Arg460His	p.R460H	ENST00000375759	NM_015001.2	460	cGc/cAc																																																																															
SDHB	6390	MSKCC	GRCh37	1	17371320	17371320	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	201	435	0	ENST00000375499.3:c.136C>T	p.Arg46Ter	p.R46*	ENST00000375499	NM_003000.2	46	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	224	428	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106803	27106804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	239	586	0	ENST00000324856.7:c.6420dup	p.Phe2141LeufsTer9	p.F2141Lfs*9	ENST00000324856	NM_006015.4	2138	-/C																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46725734	46725734	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	62	426	0	ENST00000371975.4:c.374del	p.Pro125ArgfsTer2	p.P125Rfs*2	ENST00000371975	NM_003579.3	124	Ccc/cc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162737052	162737052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	179	378	0	ENST00000367921.3:c.1196G>A	p.Arg399Gln	p.R399Q	ENST00000367921	NM_006182.2	399	cGg/cAg																																																																															
WT1	7490	MSKCC	GRCh37	11	32456756	32456756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	260	462	0	ENST00000332351.3:c.136G>A	p.Ala46Thr	p.A46T	ENST00000332351	NM_024426.4	46	Gcc/Acc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	146	825	2	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
PGR	5241	MSKCC	GRCh37	11	100912716	100912716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	163	363	0	ENST00000325455.5:c.2606G>A	p.Arg869His	p.R869H	ENST00000325455	NM_001202474.3	869	cGt/cAt																																																																															
YAP1	10413	MSKCC	GRCh37	11	102033297	102033297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	221	424	0	ENST00000282441.5:c.683C>T	p.Ala228Val	p.A228V	ENST00000282441	NM_001130145.2	228	gCt/gTt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	498215	498215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	64	272	1	ENST00000399788.2:c.43C>T	p.Pro15Ser	p.P15S	ENST00000399788	NM_001042603.1	15	Cca/Tca																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18524207	18524207	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	34	450	0	ENST00000266497.5:c.1719T>G	p.Asn573Lys	p.N573K	ENST00000266497		573	aaT/aaG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444377	49444378	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	181	598	0	ENST00000301067.7:c.2993dup	p.Met999TyrfsTer69	p.M999Yfs*69	ENST00000301067	NM_003482.3	998	cct/ccCt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112610	115112610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	293	676	0	ENST00000257566.3:c.1130C>T	p.Ala377Val	p.A377V	ENST00000257566	NM_016569.3	377	gCc/gTc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	287	737	14	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
POLE	5426	MSKCC	GRCh37	12	133202834	133202834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	255	584	0	ENST00000320574.5:c.6400G>A	p.Asp2134Asn	p.D2134N	ENST00000320574	NM_006231.2	2134	Gat/Aat																																																																															
CDK8	1024	MSKCC	GRCh37	13	26975440	26975440	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	140	299	0	ENST00000381527.3:c.1066C>T	p.Arg356Ter	p.R356*	ENST00000381527	NM_001260.1	356	Cga/Tga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911073	32911074	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	37	281	0	ENST00000380152.3:c.2588dup	p.Asn863LysfsTer18	p.N863Kfs*18	ENST00000380152		861	caa/cAaa																																																																															
MGA	23269	MSKCC	GRCh37	15	42021395	42021395	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	54	265	0	ENST00000219905.7:c.3691T>C	p.Tyr1231His	p.Y1231H	ENST00000219905	NM_001164273.1	1231	Tac/Cac																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43707894	43707894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	325	610	0	ENST00000382044.4:c.4987C>T	p.Arg1663Cys	p.R1663C	ENST00000382044	NM_001141980.1	1663	Cgt/Tgt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724657	43724657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	249	596	0	ENST00000382044.4:c.3410G>A	p.Arg1137Gln	p.R1137Q	ENST00000382044	NM_001141980.1	1137	cGg/cAg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748999	43748999	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	319	685	0	ENST00000382044.4:c.1807A>G	p.Ser603Gly	p.S603G	ENST00000382044	NM_001141980.1	603	Agt/Ggt																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2090156	2090156	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	341	803	0	ENST00000219066.1:c.793G>T	p.Ala265Ser	p.A265S	ENST00000219066	NM_002528.5	265	Gcc/Tcc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121536	2121536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	317	714	0	ENST00000219476.3:c.1865G>A	p.Arg622Gln	p.R622Q	ENST00000219476	NM_000548.3	622	cGg/cAg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646981	23646981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs587776408		P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	278	534	0	ENST00000261584.4:c.886del	p.Met296Ter	p.M296*	ENST00000261584	NM_024675.3	296	Atg/tg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	173	383	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829700	72829700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	236	577	0	ENST00000268489.5:c.6881G>A	p.Arg2294Gln	p.R2294Q	ENST00000268489	NM_006885.3	2294	cGa/cAa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347173	89347173	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	253	530	0	ENST00000301030.4:c.5777del	p.Pro1926ArgfsTer37	p.P1926Rfs*37	ENST00000301030	NM_001256183.1	1926	cCg/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782596		P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	122	680	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618570	37618572	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	240	443	0	ENST00000447079.4:c.248_250delTCT	p.Phe83del	p.F83del	ENST00000447079	NM_015083.1	82	acCTTc/acc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	288	685	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533700	63533700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	148	591	0	ENST00000307078.5:c.1454G>A	p.Gly485Asp	p.G485D	ENST00000307078	NM_004655.3	485	gGc/gAc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554738	63554738	+	start_lost	Translation_Start_Site	SNP	T	T	G			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	67	352	0	ENST00000307078.5:c.1A>C	p.Met1?	p.M1?	ENST00000307078	NM_004655.3	1	Atg/Ctg																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66526447	66526447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	188	385	0	ENST00000358598.2:c.1003C>T	p.Arg335Cys	p.R335C	ENST00000358598	NM_212471.2	335	Cgt/Tgt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39623715	39623715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	114	281	0	ENST00000262039.4:c.2122G>A	p.Ala708Thr	p.A708T	ENST00000262039	NM_002647.2	708	Gca/Aca																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39637885	39637885	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200000040		P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	155	360	0	ENST00000262039.4:c.2302C>T	p.Arg768Trp	p.R768W	ENST00000262039	NM_002647.2	768	Cgg/Tgg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217776	2217777	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	258	630	0	ENST00000398665.3:c.2555_2556del	p.Glu852AlafsTer57	p.E852Afs*57	ENST00000398665	NM_032482.2	850	ctGAga/ctga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599976	10599976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	298	781	0	ENST00000171111.5:c.1600G>A	p.Val534Met	p.V534M	ENST00000171111	NM_203500.1	534	Gtg/Atg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602358	10602358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	361	726	0	ENST00000171111.5:c.1220C>T	p.Ala407Val	p.A407V	ENST00000171111	NM_203500.1	407	gCc/gTc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11030342	11030344	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	225	492	0	ENST00000327064.4:c.1094_1096del	p.Gly365del	p.G365del	ENST00000327064	NM_199141.1	364	gaAGGa/gaa																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967792	18967792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	353	759	2	ENST00000262803.5:c.1931C>T	p.Pro644Leu	p.P644L	ENST00000262803	NM_002911.3	644	cCg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210420	36210420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	91	581	0	ENST00000222270.7:c.413G>A	p.Arg138His	p.R138H	ENST00000222270	NM_014727.1	138	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214082	36214082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	342	788	0	ENST00000222270.7:c.2908C>T	p.Arg970Trp	p.R970W	ENST00000222270	NM_014727.1	970	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214749	36214749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	261	557	0	ENST00000222270.7:c.3175G>A	p.Val1059Met	p.V1059M	ENST00000222270	NM_014727.1	1059	Gtg/Atg																																																																															
AKT2	208	MSKCC	GRCh37	19	40762855	40762855	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	84	576	0	ENST00000392038.2:c.153del	p.Leu52Ter	p.L52*	ENST00000392038	NM_001626.4	51	ccC/cc																																																																															
AXL	558	MSKCC	GRCh37	19	41765717	41765717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	249	569	2	ENST00000301178.4:c.2593C>T	p.Arg865Cys	p.R865C	ENST00000301178	NM_021913.4	865	Cgc/Tgc																																																																															
ERF	2077	MSKCC	GRCh37	19	42752859	42752859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	362	856	0	ENST00000222329.4:c.1405G>A	p.Gly469Ser	p.G469S	ENST00000222329	NM_006494.2	469	Ggc/Agc																																																																															
CIC	23152	MSKCC	GRCh37	19	42796905	42796906	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	366	873	0	ENST00000575354.2:c.3365_3366delTG	p.Val1122GlyfsTer28	p.V1122Gfs*28	ENST00000575354	NM_015125.3	1121	acTGtg/actg																																																																															
CIC	23152	MSKCC	GRCh37	19	42797778	42797778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	124	709	1	ENST00000575354.2:c.3830G>A	p.Arg1277His	p.R1277H	ENST00000575354	NM_015125.3	1277	cGc/cAc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52724296	52724297	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	62	600	0	ENST00000322088.6:c.1429dup	p.Trp477LeufsTer34	p.W477Lfs*34	ENST00000322088	NM_014225.5	476	-/T																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	262	572	9	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31381402	31381402	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	126	291	0	ENST00000328111.2:c.1126+1G>A		p.X376_splice	ENST00000328111	NM_006892.3	376																																																																																
GNAS	2778	MSKCC	GRCh37	20	57478739	57478739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	133	353	0	ENST00000371085.3:c.325G>A	p.Ala109Thr	p.A109T	ENST00000371085	NM_000516.4	109	Gcc/Acc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	142	374	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
RAF1	5894	MSKCC	GRCh37	3	12650824	12650824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773801570		P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	48	294	1	ENST00000251849.4:c.331C>T	p.Arg111Cys	p.R111C	ENST00000251849	NM_002880.3	111	Cgc/Tgc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	74	193	0	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	144	263	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509927	187509927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	133	297	0	ENST00000441802.2:c.13586C>T	p.Ala4529Val	p.A4529V	ENST00000441802	NM_005245.3	4529	gCg/gTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540501	187540501	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	41	305	0	ENST00000441802.2:c.7239del	p.Ala2414ProfsTer9	p.A2414Pfs*9	ENST00000441802	NM_005245.3	2413	aaA/aa																																																																															
TERT	7015	MSKCC	GRCh37	5	1255459	1255459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1135	105	813	1	ENST00000310581.5:c.3100C>T	p.Arg1034Cys	p.R1034C	ENST00000310581	NM_198253.2	1034	Cgc/Tgc																																																																															
TERT	7015	MSKCC	GRCh37	5	1278779	1278779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	262	866	1	ENST00000310581.5:c.2263G>A	p.Val755Ile	p.V755I	ENST00000310581	NM_198253.2	755	Gtc/Atc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31468062	31468062	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	172	375	0	ENST00000344624.3:c.2350T>C	p.Tyr784His	p.Y784H	ENST00000344624		784	Tat/Cat																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38963007	38963007	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	22	211	0	ENST00000357387.3:c.1537C>T	p.Arg513Ter	p.R513*	ENST00000357387	NM_152756.3	513	Cga/Tga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685331	86685331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	62	110	0	ENST00000274376.6:c.3047G>A	p.Arg1016His	p.R1016H	ENST00000274376	NM_002890.2	1016	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112116587	112116587	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	39	253	0	ENST00000257430.4:c.636del	p.Lys212AsnfsTer7	p.K212Nfs*7	ENST00000257430	NM_000038.5	211	gAa/ga																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149436912	149436912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	262	610	0	ENST00000286301.3:c.2257C>T	p.Arg753Trp	p.R753W	ENST00000286301	NM_005211.3	753	Cgg/Tgg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180051013	180051013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	289	712	0	ENST00000261937.6:c.1470G>T	p.Arg490Ser	p.R490S	ENST00000261937	NM_182925.4	490	agG/agT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168725	32168725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	281	649	0	ENST00000375023.3:c.4198C>T	p.Arg1400Cys	p.R1400C	ENST00000375023	NM_004557.3	1400	Cgc/Tgc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288983	33288983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	89	453	0	ENST00000374542.5:c.569G>A	p.Arg190His	p.R190H	ENST00000374542	NM_001141970.1	190	cGt/cAt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93955064	93955064	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151105732		P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	57	222	0	ENST00000369303.4:c.2834C>T	p.Thr945Met	p.T945M	ENST00000369303	NM_004440.3	945	aCg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900081	151900081	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	155	265	0	ENST00000262189.6:c.4030del	p.Ile1344Ter	p.I1344*	ENST00000262189	NM_170606.2	1344	Ata/ta																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372025	55372025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	162	318	2	ENST00000297316.4:c.715G>A	p.Ala239Thr	p.A239T	ENST00000297316	NM_022454.3	239	Gcc/Acc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36840621	36840621	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	240	542	0	ENST00000358127.4:c.1112A>G	p.Tyr371Cys	p.Y371C	ENST00000358127	NM_001280556.1	371	tAt/tGt																																																																															
ABL1	25	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	289	675	0	ENST00000318560.5:c.2352delC	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413100	139413100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	328	699	0	ENST00000277541.6:c.1042G>A	p.Ala348Thr	p.A348T	ENST00000277541	NM_017617.3	348	Gcc/Acc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411822	63411822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	147	760	0	ENST00000330258.3:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000330258	NM_152424.3	449	Gcc/Acc																																																																															
AR	367	MSKCC	GRCh37	X	66766585	66766585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	138	666	1	ENST00000374690.3:c.1597G>A	p.Gly533Arg	p.G533R	ENST00000374690	NM_000044.3	533	Gga/Aga																																																																															
MED12	9968	MSKCC	GRCh37	X	70361128	70361133	+	inframe_deletion	In_Frame_Del	DEL	CAGCAG	CAGCAG	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	77	604	0	ENST00000374080.3:c.6324_6329del	p.Gln2114_Gln2115del	p.Q2114_Q2115del	ENST00000374080		2106	CAGCAG/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0045989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	67	320	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
ATR	545	MSKCC	GRCh37	3	142272512	142272512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	32	374	0	ENST00000350721.4:c.2603C>T	p.Thr868Ile	p.T868I	ENST00000350721	NM_001184.3	868	aCc/aTc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321349	1321349	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	45	448	0	ENST00000381566.1:c.406G>C	p.Val136Leu	p.V136L	ENST00000381566		136	Gtg/Ctg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0045990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	58	302	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0045990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	207	561	1	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276250	15276250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	402	605	2	ENST00000263388.2:c.5744G>A	p.Arg1915His	p.R1915H	ENST00000263388	NM_000435.2	1915	cGc/cAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911520	134911520	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756316035		P-0045990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	179	385	0	ENST00000398015.3:c.1985G>A	p.Arg662His	p.R662H	ENST00000398015	NM_004441.4	662	cGt/cAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70357070	70357070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	208	692	0	ENST00000374080.3:c.5585G>A	p.Arg1862His	p.R1862H	ENST00000374080		1862	cGc/cAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76938961	76938961	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	102	395	0	ENST00000373344.5:c.1787C>G	p.Ser596Cys	p.S596C	ENST00000373344	NM_000489.3	596	tCt/tGt																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073621	8073621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	274	321	0	ENST00000377482.5:c.1038G>A	p.Met346Ile	p.M346I	ENST00000377482	NM_018948.3	346	atG/atA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604683	48604683	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	86	271	0	ENST00000342988.3:c.1506del	p.Met503Ter	p.M503*	ENST00000342988	NM_005359.5	502	aGg/ag																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275767	38275767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	54	432	0	ENST00000425967.3:c.1502G>A	p.Arg501His	p.R501H	ENST00000425967	NM_001174067.1	501	cGc/cAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76776321	76776321	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	120	441	0	ENST00000373344.5:c.7145T>A	p.Leu2382His	p.L2382H	ENST00000373344	NM_000489.3	2382	cTt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	22	363	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750600586		P-0046017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	60	844	1	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767326		P-0046017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	11	235	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487930	56487930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	47	575	0	ENST00000267101.3:c.1661C>T	p.Pro554Leu	p.P554L	ENST00000267101	NM_001982.3	554	cCg/cTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222119	2222119	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762523174		P-0046017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	41	969	0	ENST00000398665.3:c.2951C>T	p.Thr984Met	p.T984M	ENST00000398665	NM_032482.2	984	aCg/aTg																																																																															
ATM	472	MSKCC	GRCh37	11	108143437	108143455	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTTTCCCGTAGGCTGATC	CTTTTCCCGTAGGCTGATC	-			P-0046019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	94	346	0	ENST00000278616.4:c.3154-9_3163del		p.X1052_splice	ENST00000278616	NM_000051.3	1052																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	98	340	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865345	57865345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	262	832	0	ENST00000228682.2:c.2822C>A	p.Ala941Asp	p.A941D	ENST00000228682	NM_005269.2	941	gCt/gAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351648	89351648	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	112	727	0	ENST00000301030.4:c.1302G>T	p.Leu434Phe	p.L434F	ENST00000301030	NM_001256183.1	434	ttG/ttT																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435927	56435927	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	130	550	0	ENST00000407977.2:c.1210C>G	p.Arg404Gly	p.R404G	ENST00000407977		404	Cgc/Ggc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	139	695	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597429	10597430	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAGGTGTCTGTATCTGGGTCGTAA			P-0046019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	186	890	0	ENST00000171111.5:c.1749_1773dup	p.Ser592LeufsTer35	p.S592Lfs*35	ENST00000171111	NM_203500.1	591	-/TTACGACCCAGATACAGACACCTGG																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212652869	212652869	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	70	319	1	ENST00000342788.4:c.437G>T	p.Gly146Val	p.G146V	ENST00000342788	NM_005235.2	146	gGa/gTa																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182683466	182683466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	134	441	0	ENST00000292782.4:c.79G>T	p.Val27Leu	p.V27L	ENST00000292782	NM_020640.2	27	Gta/Tta																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372137	55372137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	97	315	0	ENST00000297316.4:c.827C>A	p.Pro276Gln	p.P276Q	ENST00000297316	NM_022454.3	276	cCa/cAa																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650325	48650325	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs184815507		P-0046019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	226	415	0	ENST00000376670.3:c.295G>A	p.Gly99Ser	p.G99S	ENST00000376670	NM_002049.3	99	Ggc/Agc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0046026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	102	288	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0046026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	84	269	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	160	643	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0046026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	74	297	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202801	128202801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	168	702	1	ENST00000341105.2:c.919C>T	p.Arg307Trp	p.R307W	ENST00000341105	NM_032638.4	307	Cgg/Tgg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732916	30732917	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAGATGGTGTGTGAGACGTTGACTGAGTGCTGGGACCACGACCCAGAGGCCCGTCTCACA			P-0046026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	16	259	0	ENST00000359013.4:c.1605_1665dup	p.Ala556ProfsTer5	p.A556Pfs*5	ENST00000359013	NM_001024847.2	535	atc/atCCAGATGGTGTGTGAGACGTTGACTGAGTGCTGGGACCACGACCCAGAGGCCCGTCTCACAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	95	435	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0046027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	681	1084	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0046027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	148	518	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
RIT1	6016	MSKCC	GRCh37	1	155870301	155870301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	156	655	0	ENST00000368323.3:c.538C>T	p.Arg180Trp	p.R180W	ENST00000368323	NM_006912.5	180	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175399	112175399	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	128	334	0	ENST00000257430.4:c.4111del	p.Ser1371ValfsTer44	p.S1371Vfs*44	ENST00000257430	NM_000038.5	1370	Aaa/aa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539727	187539727	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	70	470	0	ENST00000441802.2:c.8013C>G	p.Phe2671Leu	p.F2671L	ENST00000441802	NM_005245.3	2671	ttC/ttG																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412643	139412643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	300	1276	0	ENST00000277541.6:c.1201C>T	p.Pro401Ser	p.P401S	ENST00000277541	NM_017617.3	401	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0046028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	243	674	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0046028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	77	347	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	84	652	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112173995	112173995	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	48	365	0	ENST00000257430.4:c.2704G>T	p.Glu902Ter	p.E902*	ENST00000257430	NM_000038.5	902	Gaa/Taa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411411	63411411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	278	430	4	ENST00000330258.3:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000330258	NM_152424.3	586	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653782	89653782	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0046028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	104	325	0	ENST00000371953.3:c.80A>C	p.Tyr27Ser	p.Y27S	ENST00000371953	NM_000314.4	27	tAt/tCt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0046034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	150	321	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	71	300	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	66	216	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434070	121434070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	159	427	1	ENST00000257555.6:c.961C>T	p.Arg321Cys	p.R321C	ENST00000257555		321	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	52	330	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	101	295	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	164	654	1	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913288		P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	68	301	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	31	263	0	ENST00000375687.4:c.1933_1934dup	p.Gly646ValfsTer58	p.G646Vfs*58	ENST00000375687	NM_015338.5	642	-/GG																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522601	176522601	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	114	659	0	ENST00000292408.4:c.1703delC	p.Pro568GlnfsTer53	p.P568Qfs*53	ENST00000292408	NM_213647.1	566	cgC/cg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638456	176638456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	157	523	1	ENST00000439151.2:c.3056G>A	p.Arg1019His	p.R1019H	ENST00000439151	NM_022455.4	1019	cGc/cAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11298579	11298579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	162	474	0	ENST00000361445.4:c.1882C>T	p.Arg628Cys	p.R628C	ENST00000361445	NM_004958.3	628	Cgc/Tgc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922048	39922048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	226	326	1	ENST00000378444.4:c.4124G>A	p.Arg1375Gln	p.R1375Q	ENST00000378444	NM_001123385.1	1375	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	111	309	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117594	70117594	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	278	526	0	ENST00000245479.2:c.66del	p.Ser23AlafsTer38	p.S23Afs*38	ENST00000245479	NM_000346.3	21	gCc/gc																																																																															
CASP8	841	MSKCC	GRCh37	2	202139625	202139626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	90	223	0	ENST00000358485.4:c.790dup	p.Val264GlyfsTer13	p.V264Gfs*13	ENST00000358485	NM_001080125.1	262	-/G																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713345	30713345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	153	336	0	ENST00000359013.4:c.745C>T	p.Arg249Cys	p.R249C	ENST00000359013	NM_001024847.2	249	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214696	5214696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	219	620	2	ENST00000357368.4:c.4370G>A	p.Cys1457Tyr	p.C1457Y	ENST00000357368	NM_002850.3	1457	tGt/tAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133236017	133236017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	155	480	0	ENST00000320574.5:c.3139G>A	p.Gly1047Arg	p.G1047R	ENST00000320574	NM_006231.2	1047	Ggg/Agg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023290	27023290	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	59	80	0	ENST00000324856.7:c.400del	p.Ala134ArgfsTer98	p.A134Rfs*98	ENST00000324856	NM_006015.4	132	gtG/gt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	72	379	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210697	36210697	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	181	538	0	ENST00000222270.7:c.448C>T	p.Arg150Ter	p.R150*	ENST00000222270	NM_014727.1	150	Cga/Tga																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355347	15355347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	137	300	0	ENST00000263377.2:c.2276C>T	p.Pro759Leu	p.P759L	ENST00000263377	NM_058243.2	759	cCg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	236	670	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	139	507	3	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
MGA	23269	MSKCC	GRCh37	15	42042041	42042041	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	72	352	0	ENST00000219905.7:c.6240delA	p.Val2081TrpfsTer21	p.V2081Wfs*21	ENST00000219905	NM_001164273.1	2079	gAa/ga																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463271	25463271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	182	427	1	ENST00000264709.3:c.2222C>T	p.Ala741Val	p.A741V	ENST00000264709	NM_175629.2	741	gCg/gTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42041312	42041312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	108	362	0	ENST00000219905.7:c.5507C>A	p.Ser1836Tyr	p.S1836Y	ENST00000219905	NM_001164273.1	1836	tCt/tAt																																																																															
RHOA	387	MSKCC	GRCh37	3	49399928	49399928	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	138	384	0	ENST00000418115.1:c.408+1G>A		p.X136_splice	ENST00000418115	NM_001664.2	136																																																																																
TNFAIP3	7128	MSKCC	GRCh37	6	138198252	138198252	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	52	201	0	ENST00000237289.4:c.845G>T	p.Arg282Ile	p.R282I	ENST00000237289	NM_001270507.1	282	aGa/aTa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65301104	65301104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	100	206	0	ENST00000342505.4:c.3344C>T	p.Pro1115Leu	p.P1115L	ENST00000342505	NM_002227.2	1115	cCg/cTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727455	88727455	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	121	423	1	ENST00000360948.2:c.323+1G>A		p.X108_splice	ENST00000360948	NM_001012338.2	108																																																																																
NUP93	9688	MSKCC	GRCh37	16	56782308	56782308	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34670294		P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	81	403	0	ENST00000308159.5:c.149G>A	p.Arg50His	p.R50H	ENST00000308159	NM_014669.4	50	cGc/cAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89383348	89383348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	180	517	0	ENST00000301030.4:c.80G>T	p.Gly27Val	p.G27V	ENST00000301030	NM_001256183.1	27	gGg/gTg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46275980	46275980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	102	383	0	ENST00000371998.3:c.3416T>C	p.Met1139Thr	p.M1139T	ENST00000371998		1139	aTg/aCg																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288162	21288162	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	119	337	0	ENST00000354336.3:c.407G>T	p.Gly136Val	p.G136V	ENST00000354336	NM_005207.3	136	gGg/gTg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31448657	31448657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	65	344	0	ENST00000344624.3:c.2879C>T	p.Ser960Leu	p.S960L	ENST00000344624		960	tCg/tTg																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158453	26158453	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	230	567	0	ENST00000289316.2:c.56T>C	p.Val19Ala	p.V19A	ENST00000289316	NM_138720.2	19	gTg/gCg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324681	31324681	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	343	584	0	ENST00000412585.2:c.127del	p.Glu43SerfsTer16	p.E43Sfs*16	ENST00000412585	NM_005514.6	43	Gag/ag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382229	152382229	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	65	309	0	ENST00000206249.3:c.1339T>C	p.Cys447Arg	p.C447R	ENST00000206249	NM_000125.3	447	Tgc/Cgc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53240002	53240002	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	160	319	0	ENST00000375401.3:c.1439C>A	p.Pro480Gln	p.P480Q	ENST00000375401	NM_004187.3	480	cCg/cAg																																																																															
AR	367	MSKCC	GRCh37	X	66941758	66941758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	129	237	1	ENST00000374690.3:c.2407del	p.Gln803ArgfsTer6	p.Q803Rfs*6	ENST00000374690	NM_000044.3	801	aCc/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	103	376	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0046037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	126	540	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023678	27023678	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	47	276	0	ENST00000324856.7:c.784T>A	p.Ser262Thr	p.S262T	ENST00000324856	NM_006015.4	262	Tcg/Acg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001439	29001439	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	25	228	0	ENST00000282397.4:c.1293C>A	p.Tyr431Ter	p.Y431*	ENST00000282397	NM_002019.4	431	taC/taA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197741	66197741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	45	360	0	ENST00000273854.3:c.2958C>A	p.Phe986Leu	p.F986L	ENST00000273854	NM_004439.5	986	ttC/ttA																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31521236	31521236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	169	368	0	ENST00000344624.3:c.941C>T	p.Ser314Phe	p.S314F	ENST00000344624		314	tCt/tTt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31521282	31521282	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	209	457	0	ENST00000344624.3:c.895A>G	p.Arg299Gly	p.R299G	ENST00000344624		299	Aga/Gga																																																																															
HGF	3082	MSKCC	GRCh37	7	81339475	81339475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	31	358	0	ENST00000222390.5:c.1529G>T	p.Ser510Ile	p.S510I	ENST00000222390	NM_000601.4	510	aGt/aTt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	10	294	0				ENST00000310581	NM_198253.2																																																																																	
RET	5979	MSKCC	GRCh37	10	43604479	43604479	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	40	746	0	ENST00000355710.3:c.1064G>T	p.Arg355Met	p.R355M	ENST00000355710	NM_020975.4	355	aGg/aTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602840	10602840	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	56	1176	0	ENST00000171111.5:c.738C>G	p.Phe246Leu	p.F246L	ENST00000171111	NM_203500.1	246	ttC/ttG																																																																															
AR	367	MSKCC	GRCh37	X	66765955	66765955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	55	1050	2	ENST00000374690.3:c.967G>A	p.Glu323Lys	p.E323K	ENST00000374690	NM_000044.3	323	Gag/Aag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117683824	117683824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	66	512	0	ENST00000368508.3:c.3323C>T	p.Pro1108Leu	p.P1108L	ENST00000368508	NM_002944.2	1108	cCc/cTc																																																																															
PARP1	142	MSKCC	GRCh37	1	226567716	226567716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	32	738	0	ENST00000366794.5:c.1450G>A	p.Glu484Lys	p.E484K	ENST00000366794	NM_001618.3	484	Gag/Aag																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366772	40366772	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	23	607	1	ENST00000397332.2:c.425G>T	p.Arg142Leu	p.R142L	ENST00000397332	NM_001033082.2	142	cGg/cTg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138106	64138106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	48	1019	0	ENST00000334205.4:c.2029G>T	p.Gly677Cys	p.G677C	ENST00000334205	NM_003942.2	677	Ggc/Tgc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133930	41133931	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	25	557	1	ENST00000379561.5:c.1697_1698delinsCT	p.Leu566Pro	p.L566P	ENST00000379561	NM_002015.3	566	cTG/cCT																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30105543	30105543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	88	689	0	ENST00000331968.5:c.1143G>T	p.Glu381Asp	p.E381D	ENST00000331968	NM_002742.2	381	gaG/gaT																																																																															
TSHR	7253	MSKCC	GRCh37	14	81554362	81554362	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	25	322	1	ENST00000298171.2:c.382C>A	p.Leu128Ile	p.L128I	ENST00000298171	NM_000369.2	128	Cta/Ata																																																																															
DICER1	23405	MSKCC	GRCh37	14	95578545	95578545	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	19	304	0	ENST00000343455.3:c.2080G>T	p.Val694Leu	p.V694L	ENST00000343455	NM_177438.2	694	Gta/Tta																																																																															
BLM	641	MSKCC	GRCh37	15	91306374	91306374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	26	328	1	ENST00000355112.3:c.2061C>G	p.Ile687Met	p.I687M	ENST00000355112	NM_000057.2	687	atC/atG																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639671	3639671	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	60	1117	0	ENST00000294008.3:c.3968C>G	p.Ser1323Ter	p.S1323*	ENST00000294008	NM_032444.2	1323	tCa/tGa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647443	3647444	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	33	985	0	ENST00000294008.3:c.1619_1620delinsCT	p.Trp540Ser	p.W540S	ENST00000294008	NM_032444.2	540	tGG/tCT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577157	+	splice_acceptor_variant	Splice_Site	DNP	CT	CT	AA			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	29	591	1	ENST00000269305.4:c.783-2_783-1delinsTT		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
ALOX12B	242	MSKCC	GRCh37	17	7980455	7980455	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	33	867	2	ENST00000319144.4:c.1128G>T	p.Trp376Cys	p.W376C	ENST00000319144	NM_001139.2	376	tgG/tgT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145602	11145602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	46	845	0	ENST00000344626.4:c.3964G>A	p.Asp1322Asn	p.D1322N	ENST00000344626	NM_003072.3	1322	Gac/Aac																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349602	15349602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	44	1199	0	ENST00000263377.2:c.3972G>T	p.Gln1324His	p.Q1324H	ENST00000263377	NM_058243.2	1324	caG/caT																																																																															
BARD1	580	MSKCC	GRCh37	2	215645753	215645753	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	35	513	0	ENST00000260947.4:c.845T>A	p.Leu282Ter	p.L282*	ENST00000260947	NM_000465.2	282	tTg/tAg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202824	128202824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	47	918	0	ENST00000341105.2:c.896G>T	p.Gly299Val	p.G299V	ENST00000341105	NM_032638.4	299	gGg/gTg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138376575	138376575	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	39	567	0	ENST00000289153.2:c.2899G>T	p.Val967Phe	p.V967F	ENST00000289153	NM_006219.2	967	Gtc/Ttc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970923	79970923	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	27	556	0	ENST00000265081.6:c.1149G>T	p.Lys383Asn	p.K383N	ENST00000265081	NM_002439.4	383	aaG/aaT																																																																															
HGF	3082	MSKCC	GRCh37	7	81372695	81372695	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	30	349	0	ENST00000222390.5:c.839G>T	p.Trp280Leu	p.W280L	ENST00000222390	NM_000601.4	280	tGg/tTg																																																																															
SMO	6608	MSKCC	GRCh37	7	128843278	128843278	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	41	1101	2	ENST00000249373.3:c.385G>T	p.Val129Leu	p.V129L	ENST00000249373	NM_005631.4	129	Gta/Tta																																																																															
PREX2	80243	MSKCC	GRCh37	8	69009386	69009386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	28	571	0	ENST00000288368.4:c.2503G>A	p.Val835Met	p.V835M	ENST00000288368	NM_024870.2	835	Gtg/Atg																																																																															
PAX5	5079	MSKCC	GRCh37	9	36923442	36923442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	36	915	0	ENST00000358127.4:c.820C>A	p.Leu274Met	p.L274M	ENST00000358127	NM_001280556.1	274	Ctg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0046050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	186	854	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0046050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	232	495	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038526	47038526	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	128	882	1	ENST00000329236.7:c.457C>T	p.Arg153Ter	p.R153*	ENST00000329236	NM_001204466.1	153	Cga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115416	115115416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	157	659	0	ENST00000257566.3:c.910C>T	p.Arg304Trp	p.R304W	ENST00000257566	NM_016569.3	304	Cgg/Tgg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	442718	442718	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	258	542	0	ENST00000399788.2:c.1588C>G	p.Pro530Ala	p.P530A	ENST00000399788	NM_001042603.1	530	Cct/Gct																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3832885	3832885	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	95	456	0	ENST00000262367.5:c.1373G>C	p.Gly458Ala	p.G458A	ENST00000262367	NM_004380.2	458	gGt/gCt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0046052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	120	635	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	9	252	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028651	12028651	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	87	401	0	ENST00000353533.5:c.854A>T	p.Asp285Val	p.D285V	ENST00000353533	NM_003010.3	285	gAt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	33	424	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579362	7579362	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	68	985	0	ENST00000269305.4:c.325T>G	p.Phe109Val	p.F109V	ENST00000269305	NM_001126112.2	109	Ttc/Gtc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603147	48603147	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0046062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	43	459	0	ENST00000342988.3:c.1447+1G>C		p.X483_splice	ENST00000342988	NM_005359.5	483																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0046064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	48	310	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578179	7578179	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0046064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	78	521	0	ENST00000269305.4:c.670G>T	p.Glu224Ter	p.E224*	ENST00000269305	NM_001126112.2	224	Gag/Tag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31493382	31493382	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	35	246	0	ENST00000344624.3:c.1774A>C	p.Ile592Leu	p.I592L	ENST00000344624		592	Ata/Cta																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244269	5244269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	98	802	1	ENST00000357368.4:c.1213G>A	p.Val405Ile	p.V405I	ENST00000357368	NM_002850.3	405	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112175383	112175384	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	57	232	0	ENST00000257430.4:c.4094dup	p.Ala1366CysfsTer9	p.A1366Cfs*9	ENST00000257430	NM_000038.5	1364	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0046066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	263	716	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0046066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	47	201	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0046066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	250	356	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119762	70119763	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	312	591	1	ENST00000245479.2:c.768dup	p.Arg257AlafsTer39	p.R257Afs*39	ENST00000245479	NM_000346.3	255	gag/gaGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591925	48591925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	161	434	0	ENST00000342988.3:c.1088G>A	p.Cys363Tyr	p.C363Y	ENST00000342988	NM_005359.5	363	tGt/tAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710564	114710564	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	194	478	0	ENST00000543371.1:c.49G>T	p.Glu17Ter	p.E17*	ENST00000543371	NM_001198531.1	17	Gaa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49415897	49415897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	32	512	0	ENST00000301067.7:c.16450G>A	p.Glu5484Lys	p.E5484K	ENST00000301067	NM_003482.3	5484	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112174828	112174828	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0046066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	66	190	0	ENST00000257430.4:c.3537T>G	p.Tyr1179Ter	p.Y1179*	ENST00000257430	NM_000038.5	1179	taT/taG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	93	360	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0046075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	93	617	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600369	10600369	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	64	814	1	ENST00000171111.5:c.1486G>T	p.Glu496Ter	p.E496*	ENST00000171111	NM_203500.1	496	Gag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89693003	89693003	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0046075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	42	299	0	ENST00000371953.3:c.487A>T	p.Lys163Ter	p.K163*	ENST00000371953	NM_000314.4	163	Aaa/Taa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374583	118374583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	38	308	1	ENST00000534358.1:c.7976G>A	p.Arg2659Gln	p.R2659Q	ENST00000534358	NM_005933.3	2659	cGa/cAa																																																																															
MITF	4286	MSKCC	GRCh37	3	69928307	69928307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	41	429	0	ENST00000352241.4:c.127G>T	p.Ala43Ser	p.A43S	ENST00000352241	NM_198159.2	43	Gcc/Tcc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965654	93965654	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	42	356	0	ENST00000369303.4:c.2274C>A	p.Asp758Glu	p.D758E	ENST00000369303	NM_004440.3	758	gaC/gaA																																																																															
SMO	6608	MSKCC	GRCh37	7	128850361	128850361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	52	597	0	ENST00000249373.3:c.1624C>A	p.Leu542Met	p.L542M	ENST00000249373	NM_005631.4	542	Ctg/Atg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21628681	21628681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	84	638	2	ENST00000421138.2:c.1027G>A	p.Ala343Thr	p.A343T	ENST00000421138		343	Gct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	82	514	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577148	7577148	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1060501194		P-0046081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	105	741	2	ENST00000269305.4:c.790del	p.Leu264TyrfsTer81	p.L264Yfs*81	ENST00000269305	NM_001126112.2	264	Cta/ta																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604835	48604835	+	stop_lost	Nonstop_Mutation	SNP	T	T	G			P-0046081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	67	350	0	ENST00000342988.3:c.1657T>G	p.Ter553GlyextTer40	p.*553Gext*40	ENST00000342988	NM_005359.5	553	Tga/Gga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	33	515	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0046082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	60	602	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0046082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	87	887	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
AKT1	207	MSKCC	GRCh37	14	105243045	105243045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	98	1115	0	ENST00000349310.3:c.238T>C	p.Trp80Arg	p.W80R	ENST00000349310	NM_001014432.1	80	Tgg/Cgg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341929	8341929	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	26	335	0	ENST00000356435.5:c.4711G>C	p.Glu1571Gln	p.E1571Q	ENST00000356435		1571	Gaa/Caa																																																																															
CIC	23152	MSKCC	GRCh37	19	42797757	42797757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	89	1017	0	ENST00000575354.2:c.3809C>T	p.Pro1270Leu	p.P1270L	ENST00000575354	NM_015125.3	1270	cCc/cTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028757	47028757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1967	205	751	1	ENST00000329236.7:c.61C>T	p.Arg21Cys	p.R21C	ENST00000329236	NM_001204466.1	21	Cgc/Tgc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180055948	180055948	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1554	129	850	0	ENST00000261937.6:c.1037C>G	p.Thr346Arg	p.T346R	ENST00000261937	NM_182925.4	346	aCg/aGg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	357	561	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	418	407	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578224	7578224	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0046093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	433	767	0	ENST00000269305.4:c.625A>T	p.Arg209Ter	p.R209*	ENST00000269305	NM_001126112.2	209	Aga/Tga																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243906	41243906	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	206	551	0	ENST00000357654.3:c.3642G>T	p.Glu1214Asp	p.E1214D	ENST00000357654	NM_007294.3	1214	gaG/gaT																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259176	89259177	+	missense_variant	Missense_Mutation	DNP	AT	AT	TA			P-0046093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	35	356	0	ENST00000336596.2:c.320_321delinsTA	p.Asn107Ile	p.N107I	ENST00000336596	NM_005233.5	107	aAT/aTA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836325	151836326	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0046093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	170	495	0	ENST00000262189.6:c.14478_14479dup	p.Phe4827CysfsTer9	p.F4827Cfs*9	ENST00000262189	NM_170606.2	4827	ttc/tGTtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576870	7576870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs876659384		P-0046101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	134	396	0	ENST00000269305.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000269305	NM_001126112.2	326	Gaa/Taa																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47600981	47600981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	98	330	1	ENST00000263735.4:c.219G>A	p.Met73Ile	p.M73I	ENST00000263735	NM_002354.2	73	atG/atA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845871	151845871	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	59	408	1	ENST00000262189.6:c.13141G>T	p.Glu4381Ter	p.E4381*	ENST00000262189	NM_170606.2	4381	Gaa/Taa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864399	57864399	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	122	514	0	ENST00000228682.2:c.1876T>A	p.Tyr626Asn	p.Y626N	ENST00000228682	NM_005269.2	626	Tat/Aat																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248492	212248492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	55	310	0	ENST00000342788.4:c.3775C>G	p.Leu1259Val	p.L1259V	ENST00000342788	NM_005235.2	1259	Ctg/Gtg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713418	40713418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	151	468	0	ENST00000373198.4:c.4097C>T	p.Pro1366Leu	p.P1366L	ENST00000373198	NM_133170.3	1366	cCc/cTc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637708	52637708	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	123	235	0	ENST00000394830.3:c.2608C>T	p.Gln870Ter	p.Q870*	ENST00000394830	NM_018313.4	870	Cag/Tag																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665118	138665118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	134	343	0	ENST00000330315.3:c.447G>A	p.Met149Ile	p.M149I	ENST00000330315	NM_023067.3	149	atG/atA																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374684	149374684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	135	464	0	ENST00000360632.3:c.410C>T	p.Thr137Ile	p.T137I	ENST00000360632	NM_015472.4	137	aCt/aTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420645	49420645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	286	386	0	ENST00000301067.7:c.15104G>A	p.Cys5035Tyr	p.C5035Y	ENST00000301067	NM_003482.3	5035	tGt/tAt																																																																															
MAX	4149	MSKCC	GRCh37	14	65543268	65543268	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs17852278		P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	184	263	0	ENST00000358664.4:c.409G>T	p.Gly137Cys	p.G137C	ENST00000358664	NM_002382.4	137	Ggc/Tgc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99478113	99478113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	216	274	0	ENST00000268035.6:c.3017G>T	p.Gly1006Val	p.G1006V	ENST00000268035	NM_000875.3	1006	gGg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	342	275	0	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
AURKB	9212	MSKCC	GRCh37	17	8111110	8111110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	177	448	0	ENST00000585124.1:c.97C>A	p.Pro33Thr	p.P33T	ENST00000585124	NM_004217.3	33	Cct/Act																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004725	16004725	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	97	338	0	ENST00000268712.3:c.2529A>T	p.Glu843Asp	p.E843D	ENST00000268712	NM_006311.3	843	gaA/gaT																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068403	26068403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	98	203	0	ENST00000435504.4:c.87G>T	p.Met29Ile	p.M29I	ENST00000435504		29	atG/atT																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371721	225371721	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	45	205	0	ENST00000264414.4:c.884-1G>C		p.X295_splice	ENST00000264414	NM_003590.4	295																																																																																
PAK7	57144	MSKCC	GRCh37	20	9560829	9560829	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	197	250	0	ENST00000353224.5:c.953A>G	p.Tyr318Cys	p.Y318C	ENST00000353224	NM_177990.2	318	tAc/tGc																																																																															
EP300	2033	MSKCC	GRCh37	22	41565575	41565575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	134	158	0	ENST00000263253.7:c.4241A>G	p.Tyr1414Cys	p.Y1414C	ENST00000263253	NM_001429.3	1414	tAt/tGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540539	187540540	+	stop_gained	Nonsense_Mutation	DNP	CG	CG	AC			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	118	230	1	ENST00000441802.2:c.7200_7201delinsGT	p.Ser2400_Glu2401delinsArgTer	p.S2400_E2401delinsR*	ENST00000441802	NM_005245.3	2400	agCGag/agGTag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31431749	31431749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	130	176	0	ENST00000344624.3:c.3079G>T	p.Gly1027Trp	p.G1027W	ENST00000344624		1027	Ggg/Tgg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871251	35871251	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	46	183	0	ENST00000303115.3:c.473A>T	p.Lys158Met	p.K158M	ENST00000303115	NM_002185.3	158	aAg/aTg																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839969	27839969	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	219	429	0	ENST00000328488.2:c.125A>T	p.Tyr42Phe	p.Y42F	ENST00000328488	NM_003533.2	42	tAc/tTc																																																																															
HGF	3082	MSKCC	GRCh37	7	81358920	81358920	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	135	193	0	ENST00000222390.5:c.1040+1G>A		p.X347_splice	ENST00000222390	NM_000601.4	347																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21974676	21974676	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	224	266	0	ENST00000304494.5:c.150+1G>T		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	237	236	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099397	27099397	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	235	309	0	ENST00000324856.7:c.3634C>T	p.Gln1212Ter	p.Q1212*	ENST00000324856	NM_006015.4	1212	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0046104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	392	450	0	ENST00000269305.4:c.376-2A>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
PTEN	5728	MSKCC	GRCh37	10	89692949	89692949	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	227	314	0	ENST00000371953.3:c.437del	p.Leu146Ter	p.L146*	ENST00000371953	NM_000314.4	145	Ttt/tt																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45799086	45799086	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0046104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	330	533	1	ENST00000372115.3:c.305G>T	p.Arg102Leu	p.R102L	ENST00000372115	NM_001048171.1	102	cGg/cTg																																																																															
WT1	7490	MSKCC	GRCh37	11	32410704	32410704	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	77	251	0	ENST00000332351.3:c.1454G>T	p.Arg485Leu	p.R485L	ENST00000332351	NM_024426.4	485	cGg/cTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231486	46231486	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	162	154	0	ENST00000334344.6:c.1326C>G	p.Ser442Arg	p.S442R	ENST00000334344	NM_152641.2	442	agC/agG																																																																															
B2M	567	MSKCC	GRCh37	15	45003750	45003759	+	frameshift_variant	Frame_Shift_Del	DEL	TCGCTCCGTG	TCGCTCCGTG	-			P-0046104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	209	372	0	ENST00000558401.1:c.6_15del	p.Arg3ProfsTer2	p.R3Pfs*2	ENST00000558401	NM_004048.2	2	tcTCGCTCCGTG/tc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25990544	25990544	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0046104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	112	281	0	ENST00000435504.4:c.683C>G	p.Ser228Ter	p.S228*	ENST00000435504		228	tCa/tGa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57466824	57466824	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	71	137	0	ENST00000371085.3:c.43G>C	p.Glu15Gln	p.E15Q	ENST00000371085	NM_000516.4	15	Gag/Cag																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435622	149435622	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	239	428	0	ENST00000286301.3:c.2521T>C	p.Tyr841His	p.Y841H	ENST00000286301	NM_005211.3	841	Tat/Cat																																																																															
HGF	3082	MSKCC	GRCh37	7	81374409	81374409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	141	200	0	ENST00000222390.5:c.653G>T	p.Ser218Ile	p.S218I	ENST00000222390	NM_000601.4	218	aGt/aTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	93	188	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	143	462	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0046111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	30	119	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0046111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	140	559	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88669510	88669510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	22	199	1	ENST00000360948.2:c.1388G>A	p.Gly463Glu	p.G463E	ENST00000360948	NM_001012338.2	463	gGa/gAa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66242725	66242725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	13	138	0	ENST00000273854.3:c.1847G>A	p.Ser616Asn	p.S616N	ENST00000273854	NM_004439.5	616	aGc/aAc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38614584	38614584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	51	258	1	ENST00000299084.4:c.350G>A	p.Arg117Gln	p.R117Q	ENST00000299084	NM_152594.2	117	cGa/cAa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138561	11138561	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	37	331	0	ENST00000344626.4:c.3317C>A	p.Thr1106Asn	p.T1106N	ENST00000344626	NM_003072.3	1106	aCc/aAc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26022295	26022295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	171	306	1	ENST00000435504.4:c.362G>A	p.Gly121Asp	p.G121D	ENST00000435504		121	gGc/gAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180049806	180049806	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs557205062		P-0046111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	108	417	0	ENST00000261937.6:c.1582G>A	p.Val528Met	p.V528M	ENST00000261937	NM_182925.4	528	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	175	324	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	121	673	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967794	18967794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	93	896	1	ENST00000262803.5:c.1933G>A	p.Glu645Lys	p.E645K	ENST00000262803	NM_002911.3	645	Gag/Aag																																																																															
ATR	545	MSKCC	GRCh37	3	142257436	142257436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	44	254	0	ENST00000350721.4:c.3613C>T	p.His1205Tyr	p.H1205Y	ENST00000350721	NM_001184.3	1205	Cat/Tat																																																																															
FANCC	2176	MSKCC	GRCh37	9	97864045	97864045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	115	506	0	ENST00000289081.3:c.1621C>T	p.Pro541Ser	p.P541S	ENST00000289081	NM_000136.2	541	Cct/Tct																																																																															
BCOR	54880	MSKCC	GRCh37	X	39935747	39935747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	52	205	0	ENST00000378444.4:c.125G>T	p.Arg42Ile	p.R42I	ENST00000378444	NM_001123385.1	42	aGa/aTa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412975	63412975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	103	445	3	ENST00000330258.3:c.192G>T	p.Lys64Asn	p.K64N	ENST00000330258	NM_152424.3	64	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	490	613	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	155	179	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881002	37881003	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTCCCCA			P-0046157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	492	624	0	ENST00000269571.5:c.2332_2340dupGGCTCCCCA	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	-/GGCTCCCCA																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752411	57752412	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0046157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	74	134	0	ENST00000274289.3:c.1161_1162delAG	p.Arg387SerfsTer3	p.R387Sfs*3	ENST00000274289	NM_006622.3	387	agAGtg/agtg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0046157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	221	284	0				ENST00000310581	NM_198253.2																																																																																	
CDKN1B	1027	MSKCC	GRCh37	12	12870836	12870836	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	126	200	0	ENST00000228872.4:c.64del	p.Glu22SerfsTer20	p.E22Sfs*20	ENST00000228872	NM_004064.3	21	gcG/gc																																																																															
EED	8726	MSKCC	GRCh37	11	85989503	85989516	+	frameshift_variant	Frame_Shift_Del	DEL	ATAGCAGCATTCTT	ATAGCAGCATTCTT	-			P-0046157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	91	296	0	ENST00000263360.6:c.1267_1280del	p.Ser423CysfsTer3	p.S423Cfs*3	ENST00000263360	NM_003797.3	421	gATAGCAGCATTCTT/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0046158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	268	308	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127912029	127912029	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	120	301	1	ENST00000373547.4:c.841G>T	p.Glu281Ter	p.E281*	ENST00000373547	NM_002721.4	281	Gaa/Taa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248528	212248528	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	458	507	0	ENST00000342788.4:c.3739C>A	p.Leu1247Met	p.L1247M	ENST00000342788	NM_005235.2	1247	Ctg/Atg																																																																															
ALK	238	MSKCC	GRCh37	2	30143167	30143167	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	486	804	1	ENST00000389048.3:c.359C>A	p.Ala120Asp	p.A120D	ENST00000389048	NM_004304.4	120	gCc/gAc																																																																															
ATM	472	MSKCC	GRCh37	11	108186757	108186757	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	245	289	0	ENST00000278616.4:c.6115G>T	p.Glu2039Ter	p.E2039*	ENST00000278616	NM_000051.3	2039	Gaa/Taa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561327	9561327	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	72	375	0	ENST00000353224.5:c.455A>G	p.Tyr152Cys	p.Y152C	ENST00000353224	NM_177990.2	152	tAt/tGt																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589519	69589519	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	71	127	0	ENST00000168712.1:c.334C>G	p.Arg112Gly	p.R112G	ENST00000168712	NM_002007.2	112	Cgc/Ggc																																																																															
RET	5979	MSKCC	GRCh37	10	43604578	43604578	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	172	805	2	ENST00000355710.3:c.1163T>A	p.Val388Asp	p.V388D	ENST00000355710	NM_020975.4	388	gTc/gAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28896476	28896476	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	120	295	0	ENST00000282397.4:c.2974G>C	p.Glu992Gln	p.E992Q	ENST00000282397	NM_002019.4	992	Gag/Cag																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647134	23647134	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	151	603	0	ENST00000261584.4:c.733del	p.Ala245ArgfsTer34	p.A245Rfs*34	ENST00000261584	NM_024675.3	245	Gcg/cg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56400683	56400683	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	70	248	0	ENST00000348428.3:c.1277T>A	p.Val426Asp	p.V426D	ENST00000348428	NM_006785.3	426	gTc/gAc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46603838	46603838	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	490	603	0	ENST00000263734.3:c.1195G>T	p.Glu399Ter	p.E399*	ENST00000263734	NM_001430.4	399	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	14	397	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
AXL	558	MSKCC	GRCh37	19	41765621	41765621	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	225	809	0	ENST00000301178.4:c.2501del	p.Pro834LeufsTer122	p.P834Lfs*122	ENST00000301178	NM_021913.4	833	Ccc/cc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117755	70117755	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	57	985	1	ENST00000245479.2:c.223G>T	p.Glu75Ter	p.E75*	ENST00000245479	NM_000346.3	75	Gag/Tag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121802	2121802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	78	1096	0	ENST00000219476.3:c.1964C>A	p.Ser655Tyr	p.S655Y	ENST00000219476	NM_000548.3	655	tCt/tAt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410342	63410342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	75	932	0	ENST00000330258.3:c.2825G>A	p.Arg942Gln	p.R942Q	ENST00000330258	NM_152424.3	942	cGa/cAa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16237768	16237768	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	28	289	1	ENST00000375759.3:c.1215G>T	p.Gln405His	p.Q405H	ENST00000375759	NM_015001.2	405	caG/caT																																																																															
STK40	83931	MSKCC	GRCh37	1	36824385	36824385	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	73	747	1	ENST00000373129.3:c.151C>T	p.Gln51Ter	p.Q51*	ENST00000373129	NM_032017.1	51	Cag/Tag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	341239	341239	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	77	1126	0	ENST00000262320.3:c.2245G>C	p.Val749Leu	p.V749L	ENST00000262320	NM_003502.3	749	Gtg/Ctg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836974	89836974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0046162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	92	765	0	ENST00000389301.3:c.2220G>C	p.Glu740Asp	p.E740D	ENST00000389301	NM_000135.2	740	gaG/gaC																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15295734	15295734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	277	1038	2	ENST00000263388.2:c.2393G>A	p.Cys798Tyr	p.C798Y	ENST00000263388	NM_000435.2	798	tGc/tAc																																																																															
IDH1	3417	MSKCC	GRCh37	2	209106733	209106733	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	169	491	0	ENST00000345146.2:c.835G>T	p.Asp279Tyr	p.D279Y	ENST00000345146	NM_005896.2	279	Gac/Tac																																																																															
BARD1	580	MSKCC	GRCh37	2	215646012	215646012	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	80	321	0	ENST00000260947.4:c.586A>G	p.Lys196Glu	p.K196E	ENST00000260947	NM_000465.2	196	Aaa/Gaa																																																																															
EP300	2033	MSKCC	GRCh37	22	41574301	41574302	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TA			P-0046162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	41	637	0	ENST00000263253.7:c.6586_6587delinsTA	p.Gly2196Ter	p.G2196*	ENST00000263253	NM_001429.3	2196	GGa/TAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916918	178916926	+	inframe_deletion	In_Frame_Del	DEL	TTGAACCAG	TTGAACCAG	-			P-0046162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	76	276	0	ENST00000263967.3:c.306_314del	p.Glu103_Val105del	p.E103_V105del	ENST00000263967	NM_006218.2	102	aTTGAACCAGta/ata																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555068	106555068	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	21	470	0	ENST00000369096.4:c.2185G>C	p.Glu729Gln	p.E729Q	ENST00000369096	NM_001198.3	729	Gaa/Caa																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137527276	137527276	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	12	322	0	ENST00000367739.4:c.370G>C	p.Asp124His	p.D124H	ENST00000367739	NM_000416.2	124	Gat/Cat																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502292	157502292	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	34	575	0	ENST00000346085.5:c.3325G>C	p.Glu1109Gln	p.E1109Q	ENST00000346085	NM_020732.3	1109	Gag/Cag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2983981	2983981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	47	764	0	ENST00000396946.4:c.549G>A	p.Met183Ile	p.M183I	ENST00000396946	NM_032415.4	183	atG/atA																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974754	21974766	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGACCCCGGGC	CCCGACCCCGGGC	-			P-0045650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	40	174	0	ENST00000304494.5:c.61_73delGCCCGGGGTCGGG	p.Ala21Ter	p.A21*	ENST00000304494	NM_000077.4	21	GCCCGGGGTCGGGta/ta																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600429	10600429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	92	543	0	ENST00000171111.5:c.1426G>A	p.Gly476Arg	p.G476R	ENST00000171111	NM_203500.1	476	Ggg/Agg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225449660	225449660	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0045650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	20	186	0	ENST00000264414.4:c.66+1G>T		p.X22_splice	ENST00000264414	NM_003590.4	22																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66197724	66197724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	20	249	0	ENST00000273854.3:c.2975G>T	p.Ser992Ile	p.S992I	ENST00000273854	NM_004439.5	992	aGt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576863	7576872	+	frameshift_variant	Frame_Shift_Del	DEL	AAATATTCTC	AAATATTCTC	-			P-0045650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	57	426	0	ENST00000269305.4:c.974_983del	p.Gly325AlafsTer17	p.G325Afs*17	ENST00000269305	NM_001126112.2	325	gGAGAATATTTc/gc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193219841	193219841	+	stop_lost	Nonstop_Mutation	SNP	G	G	T			P-0045650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	21	166	0	ENST00000367435.3:c.1595G>T	p.Ter532LeuextTer29	p.*532Lext*29	ENST00000367435	NM_024529.4	532	tGa/tTa																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926879	112926879	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	47	445	0	ENST00000351677.2:c.1499A>T	p.Gln500Leu	p.Q500L	ENST00000351677	NM_002834.3	500	cAg/cTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096066	11096066	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	81	527	0	ENST00000344626.4:c.340G>C	p.Asp114His	p.D114H	ENST00000344626	NM_003072.3	114	Gac/Cac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134224	11134224	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	60	426	0	ENST00000344626.4:c.2890A>T	p.Ile964Phe	p.I964F	ENST00000344626	NM_003072.3	964	Atc/Ttc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89456456	89456456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	28	243	0	ENST00000336596.2:c.1632G>A	p.Met544Ile	p.M544I	ENST00000336596	NM_005233.5	544	atG/atA																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499355	89499355	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	43	264	0	ENST00000336596.2:c.2525G>T	p.Arg842Leu	p.R842L	ENST00000336596	NM_005233.5	842	cGa/cTa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920337	134920337	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	46	275	0	ENST00000398015.3:c.2152G>T	p.Val718Leu	p.V718L	ENST00000398015	NM_004441.4	718	Gtg/Ttg																																																																															
KDR	3791	MSKCC	GRCh37	4	55987320	55987320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	18	221	0	ENST00000263923.4:c.105C>A	p.Ser35Arg	p.S35R	ENST00000263923	NM_002253.2	35	agC/agA																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967197	93967197	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	17	206	0	ENST00000369303.4:c.2155C>A	p.Leu719Ile	p.L719I	ENST00000369303	NM_004440.3	719	Cta/Ata																																																																															
PARK2	5071	MSKCC	GRCh37	6	161970037	161970037	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0045650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	80	422	0	ENST00000366898.1:c.934-2A>C		p.X312_splice	ENST00000366898	NM_004562.2	312																																																																																
PARK2	5071	MSKCC	GRCh37	6	162394398	162394398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	41	232	0	ENST00000366898.1:c.670G>T	p.Val224Leu	p.V224L	ENST00000366898	NM_004562.2	224	Gta/Tta																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245298	53245298	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	88	310	0	ENST00000375401.3:c.739G>T	p.Gly247Cys	p.G247C	ENST00000375401	NM_004187.3	247	Ggc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0045653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	441	399	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931589		P-0045653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	14	240	0	ENST00000349496.5:c.101G>A	p.Gly34Glu	p.G34E	ENST00000349496	NM_001904.3	34	gGa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0045661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	208	558	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0045661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	97	226	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295801	212295801	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	81	320	1	ENST00000342788.4:c.2512C>T	p.Arg838Ter	p.R838*	ENST00000342788	NM_005235.2	838	Cga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1226617	1226617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	143	418	0	ENST00000326873.7:c.1273C>T	p.Arg425Cys	p.R425C	ENST00000326873	NM_000455.4	425	Cgc/Tgc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729709	41729709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	123	497	0	ENST00000242208.4:c.820G>A	p.Gly274Arg	p.G274R	ENST00000242208	NM_002192.2	274	Gga/Aga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32930577	32930577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	48	191	0	ENST00000380152.3:c.7448G>T	p.Ser2483Ile	p.S2483I	ENST00000380152		2483	aGt/aTt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201706	66201706	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	104	312	0	ENST00000273854.3:c.2796G>C	p.Leu932Phe	p.L932F	ENST00000273854	NM_004439.5	932	ttG/ttC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	74	271	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858210	9858210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	96	407	1	ENST00000330684.3:c.3191C>T	p.Thr1064Met	p.T1064M	ENST00000330684	NM_001134407.1	1064	aCg/aTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679823	88679823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	47	367	0	ENST00000360948.2:c.640G>A	p.Val214Met	p.V214M	ENST00000360948	NM_001012338.2	214	Gtg/Atg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342401	118342401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	64	188	0	ENST00000534358.1:c.527G>A	p.Arg176His	p.R176H	ENST00000534358	NM_005933.3	176	cGt/cAt																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873757	35873757	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	161	434	0	ENST00000216797.5:c.94A>G	p.Ser32Gly	p.S32G	ENST00000216797	NM_020529.2	32	Agc/Ggc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099315	157099332	+	inframe_deletion	In_Frame_Del	DEL	CCACCACCACCACCATGC	CCACCACCACCACCATGC	-			P-0045748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	23	264	0	ENST00000346085.5:c.267_284del	p.Ala90_His95del	p.A90_H95del	ENST00000346085	NM_020732.3	84	caCCACCACCACCACCATGCc/cac																																																																															
APC	324	MSKCC	GRCh37	5	112175600	112175600	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0045748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	38	269	0	ENST00000257430.4:c.4309A>T	p.Lys1437Ter	p.K1437*	ENST00000257430	NM_000038.5	1437	Aaa/Taa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206933	162206933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	13	207	0	ENST00000366898.1:c.742G>A	p.Val248Ile	p.V248I	ENST00000366898	NM_004562.2	248	Gtc/Atc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0045751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	13	243	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0045919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	508	557	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043438	180043438	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373876329		P-0045919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	491	589	0	ENST00000261937.6:c.3148G>A	p.Val1050Met	p.V1050M	ENST00000261937	NM_182925.4	1050	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175615	112175615	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	151	265	0	ENST00000257430.4:c.4325delC	p.Pro1442LeufsTer31	p.P1442Lfs*31	ENST00000257430	NM_000038.5	1442	Cct/ct																																																																															
TEK	7010	MSKCC	GRCh37	9	27213494	27213494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	107	333	0	ENST00000380036.4:c.2890G>A	p.Asp964Asn	p.D964N	ENST00000380036	NM_000459.3	964	Gat/Aat																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330656	65330656	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0045919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	88	213	0	ENST00000342505.4:c.991-1G>A		p.X331_splice	ENST00000342505	NM_002227.2	331																																																																																
BARD1	580	MSKCC	GRCh37	2	215646102	215646102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	74	484	1	ENST00000260947.4:c.496C>T	p.Gln166Ter	p.Q166*	ENST00000260947	NM_000465.2	166	Cag/Tag																																																																															
MED12	9968	MSKCC	GRCh37	X	70353052	70353052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	111	358	0	ENST00000374080.3:c.4607G>A	p.Arg1536Gln	p.R1536Q	ENST00000374080		1536	cGg/cAg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178577	56178579	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0045924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	24	220	0	ENST00000399503.3:c.3560_3562del	p.Glu1187del	p.E1187del	ENST00000399503	NM_005921.1	1184	GAA/-																																																																															
CDH1	999	MSKCC	GRCh37	16	68849545	68849545	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	67	567	1	ENST00000261769.5:c.1452del	p.Ile485SerfsTer37	p.I485Sfs*37	ENST00000261769	NM_004360.3	483	gCc/gc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011207	12011207	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	22	264	3	ENST00000353533.5:c.614T>C	p.Leu205Ser	p.L205S	ENST00000353533	NM_003010.3	205	tTa/tCa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25964924	25964924	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	43	358	0	ENST00000435504.4:c.4282T>A	p.Cys1428Ser	p.C1428S	ENST00000435504		1428	Tgc/Agc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294662	1294662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	27	344	0	ENST00000310581.5:c.339G>T	p.Glu113Asp	p.E113D	ENST00000310581	NM_198253.2	113	gaG/gaT																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56167830	56167830	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	54	363	0	ENST00000399503.3:c.1395C>A	p.Asn465Lys	p.N465K	ENST00000399503	NM_005921.1	465	aaC/aaA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878842	151878842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	65	491	2	ENST00000262189.6:c.6103C>T	p.Pro2035Ser	p.P2035S	ENST00000262189	NM_170606.2	2035	Cct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0045926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	153	378	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0045926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	140	579	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661485	227661485	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	82	611	0	ENST00000305123.5:c.1970T>G	p.Val657Gly	p.V657G	ENST00000305123	NM_005544.2	657	gTg/gGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0045927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	50	406	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505556	25505556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	101	686	0	ENST00000264709.3:c.202G>T	p.Asp68Tyr	p.D68Y	ENST00000264709	NM_175629.2	68	Gac/Tac																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31388718	31388718	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	48	481	0	ENST00000328111.2:c.1983G>T	p.Arg661Ser	p.R661S	ENST00000328111	NM_006892.3	661	agG/agT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	53	327	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974730	21974730	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	45	292	0	ENST00000304494.5:c.97G>T	p.Glu33Ter	p.E33*	ENST00000304494	NM_000077.4	33	Gag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81358987	81358987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	57	383	0	ENST00000222390.5:c.974C>T	p.Pro325Leu	p.P325L	ENST00000222390	NM_000601.4	325	cCa/cTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099026	27099026	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	53	403	0	ENST00000324856.7:c.3442C>T	p.Gln1148Ter	p.Q1148*	ENST00000324856	NM_006015.4	1148	Cag/Tag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117663617	117663617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	42	356	0	ENST00000368508.3:c.4615C>T	p.Pro1539Ser	p.P1539S	ENST00000368508	NM_002944.2	1539	Cct/Tct																																																																															
NF1	4763	MSKCC	GRCh37	17	29653271	29653271	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	16	176	0	ENST00000358273.4:c.5268+1G>T		p.X1756_splice	ENST00000358273	NM_001042492.2	1756																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53223772	53223772	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	130	790	0	ENST00000375401.3:c.3587G>C	p.Gly1196Ala	p.G1196A	ENST00000375401	NM_004187.3	1196	gGg/gCg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683754	162683754	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	64	445	0	ENST00000366898.1:c.215G>T	p.Arg72Ile	p.R72I	ENST00000366898	NM_004562.2	72	aGa/aTa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410145	63410145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	58	649	0	ENST00000330258.3:c.3022C>A	p.Pro1008Thr	p.P1008T	ENST00000330258	NM_152424.3	1008	Cca/Aca																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865090	57865090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	39	776	1	ENST00000228682.2:c.2567C>A	p.Pro856His	p.P856H	ENST00000228682	NM_005269.2	856	cCt/cAt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396469	30396469	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	32	236	0	ENST00000331968.5:c.250A>G	p.Ile84Val	p.I84V	ENST00000331968	NM_002742.2	84	Att/Gtt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375007	45375007	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	23	293	0	ENST00000262160.6:c.836A>G	p.Tyr279Cys	p.Y279C	ENST00000262160	NM_005901.5	279	tAt/tGt																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480009	50480010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	69	602	0	ENST00000394963.4:c.249dup	p.Asn84GlufsTer47	p.N84Efs*47	ENST00000394963	NM_003076.4	81	-/G																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106515247	106515247	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	31	230	1	ENST00000359195.3:c.2390C>A	p.Ala797Glu	p.A797E	ENST00000359195	NM_002649.2	797	gCa/gAa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11210204	11210204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	77	450	0	ENST00000361445.4:c.4549G>T	p.Ala1517Ser	p.A1517S	ENST00000361445	NM_004958.3	1517	Gct/Tct																																																																															
SESN2	83667	MSKCC	GRCh37	1	28605730	28605756	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCACTTCCGCCACTCAGAGAAGGTAT	GGCACTTCCGCCACTCAGAGAAGGTAT	-			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	42	411	0	ENST00000253063.3:c.1335_1356+5del		p.X445_splice	ENST00000253063	NM_031459.4	445																																																																																
CSF3R	1441	MSKCC	GRCh37	1	36932401	36932401	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	125	647	0	ENST00000361632.4:c.2068A>T	p.Thr690Ser	p.T690S	ENST00000361632		690	Acg/Tcg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206650025	206650025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	81	407	0	ENST00000367120.3:c.545C>T	p.Pro182Leu	p.P182L	ENST00000367120	NM_014002.3	182	cCc/cTc																																																																															
PARP1	142	MSKCC	GRCh37	1	226590060	226590060	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	66	446	0	ENST00000366794.5:c.141del	p.Val48SerfsTer47	p.V48Sfs*47	ENST00000366794	NM_001618.3	47	aaA/aa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64135680	64135680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	82	710	0	ENST00000334205.4:c.1148G>A	p.Gly383Asp	p.G383D	ENST00000334205	NM_003942.2	383	gGt/gAt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625228	69625228	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	48	739	0	ENST00000334134.2:c.565G>T	p.Glu189Ter	p.E189*	ENST00000334134	NM_005247.2	189	Gag/Tag																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633604	69633604	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	11	55	0	ENST00000334134.2:c.98G>T	p.Gly33Val	p.G33V	ENST00000334134	NM_005247.2	33	gGc/gTc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420308	88420308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	47	337	0	ENST00000360948.2:c.2378G>T	p.Arg793Leu	p.R793L	ENST00000360948	NM_001012338.2	793	cGa/cTa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678625	88678626	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GG	GG	TT			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	28	300	1	ENST00000360948.2:c.910_911delinsAA	p.Pro304Asn	p.P304N	ENST00000360948	NM_001012338.2	304	CCc/AAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858454	9858454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	46	415	0	ENST00000330684.3:c.2947C>A	p.Gln983Lys	p.Q983K	ENST00000330684	NM_001134407.1	983	Caa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68849596	68849596	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	76	577	0	ENST00000261769.5:c.1499G>T	p.Gly500Val	p.G500V	ENST00000261769	NM_004360.3	500	gGc/gTc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351936	89351936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	128	670	1	ENST00000301030.4:c.1014G>T	p.Lys338Asn	p.K338N	ENST00000301030	NM_001256183.1	338	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7579440	7579441	+	frameshift_variant	Frame_Shift_Ins	INS	CC	CC	AAA			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	89	668	1	ENST00000269305.4:c.246_247delinsTTT	p.Ala83PhefsTer66	p.A83Ffs*66	ENST00000269305	NM_001126112.2	82	ccGGcg/ccTTTcg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627793	37627794	+	missense_variant	Missense_Mutation	DNP	CA	CA	TT			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	84	593	0	ENST00000447079.4:c.1708_1709delinsTT	p.Gln570Leu	p.Q570L	ENST00000447079	NM_015083.1	570	CAg/TTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866352	37866353	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	34	602	0	ENST00000269571.5:c.658dup	p.Cys220LeufsTer15	p.C220Lfs*15	ENST00000269571		219	-/T																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260238	19260238	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	68	488	0	ENST00000162023.5:c.55G>T	p.Val19Leu	p.V19L	ENST00000162023		19	Gtg/Ttg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795088	242795088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	84	801	0	ENST00000334409.5:c.121C>A	p.Leu41Met	p.L41M	ENST00000334409	NM_005018.2	41	Ctg/Atg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713354	40713354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	40	578	0	ENST00000373198.4:c.4161C>A	p.Asp1387Glu	p.D1387E	ENST00000373198	NM_133170.3	1387	gaC/gaA																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391198	89391198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	39	334	0	ENST00000336596.2:c.1264C>A	p.Pro422Thr	p.P422T	ENST00000336596	NM_005233.5	422	Cca/Aca																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119720921	119720921	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	70	375	0	ENST00000316626.5:c.254A>G	p.Lys85Arg	p.K85R	ENST00000316626		85	aAg/aGg																																																																															
ATR	545	MSKCC	GRCh37	3	142231111	142231111	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	63	308	0	ENST00000350721.4:c.4843G>T	p.Asp1615Tyr	p.D1615Y	ENST00000350721	NM_001184.3	1615	Gac/Tac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356332	66356332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	28	323	0	ENST00000273854.3:c.1165G>T	p.Val389Leu	p.V389L	ENST00000273854	NM_004439.5	389	Gtg/Ttg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143033810	143033811	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	20	288	0	ENST00000262992.4:c.2160_2161delinsAA	p.Leu721Ile	p.L721I	ENST00000262992	NM_001101669.1	720	aaGCtt/aaAAtt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131973868	131973868	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	55	254	0	ENST00000265335.6:c.3571G>T	p.Gly1191Ter	p.G1191*	ENST00000265335		1191	Gga/Tga																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149501453	149501453	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	39	486	0	ENST00000261799.4:c.2334C>A	p.Tyr778Ter	p.Y778*	ENST00000261799	NM_002609.3	778	taC/taA																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522725	176522725	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	43	603	0	ENST00000292408.4:c.1821+1G>C		p.X607_splice	ENST00000292408	NM_213647.1	607																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32184966	32184966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	68	592	0	ENST00000375023.3:c.1702G>T	p.Asp568Tyr	p.D568Y	ENST00000375023	NM_004557.3	568	Gac/Tac																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502301	157502301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	60	383	0	ENST00000346085.5:c.3334G>T	p.Gly1112Cys	p.G1112C	ENST00000346085	NM_020732.3	1112	Ggt/Tgt																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969887	161969887	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	32	419	0	ENST00000366898.1:c.1082G>T	p.Gly361Val	p.G361V	ENST00000366898	NM_004562.2	361	gGg/gTg																																																																															
PARK2	5071	MSKCC	GRCh37	6	161990389	161990389	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	39	280	0	ENST00000366898.1:c.931C>A	p.Gln311Lys	p.Q311K	ENST00000366898	NM_004562.2	311	Cag/Aag																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729391	41729391	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	35	509	0	ENST00000242208.4:c.1138G>T	p.Gly380Cys	p.G380C	ENST00000242208	NM_002192.2	380	Ggc/Tgc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508431	106508431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	28	305	0	ENST00000359195.3:c.425C>A	p.Pro142Gln	p.P142Q	ENST00000359195	NM_002649.2	142	cCg/cAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404560	8404560	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	22	171	0	ENST00000356435.5:c.4187G>T	p.Arg1396Leu	p.R1396L	ENST00000356435		1396	cGg/cTg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128347847	128347847	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	52	479	0	ENST00000265960.3:c.658G>T	p.Glu220Ter	p.E220*	ENST00000265960	NM_001006617.1	220	Gag/Tag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921436	39921436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	33	463	0	ENST00000378444.4:c.4384G>A	p.Ala1462Thr	p.A1462T	ENST00000378444	NM_001123385.1	1462	Gct/Act																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934420	39934420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	33	393	0	ENST00000378444.4:c.179C>A	p.Thr60Lys	p.T60K	ENST00000378444	NM_001123385.1	60	aCg/aAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028878	47028878	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	36	532	0	ENST00000329236.7:c.182C>G	p.Ser61Cys	p.S61C	ENST00000329236	NM_001204466.1	61	tCt/tGt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412850	63412850	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	53	642	1	ENST00000330258.3:c.317C>A	p.Pro106His	p.P106H	ENST00000330258	NM_152424.3	106	cCt/cAt																																																																															
AR	367	MSKCC	GRCh37	X	66931521	66931521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	30	407	0	ENST00000374690.3:c.2163G>T	p.Lys721Asn	p.K721N	ENST00000374690	NM_000044.3	721	aaG/aaT																																																																															
MED12	9968	MSKCC	GRCh37	X	70350054	70350054	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	35	412	0	ENST00000374080.3:c.4037G>T	p.Arg1346Leu	p.R1346L	ENST00000374080		1346	cGc/cTc																																																																															
ATRX	546	MSKCC	GRCh37	X	76845398	76845398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	21	219	0	ENST00000373344.5:c.6123C>G	p.Ser2041Arg	p.S2041R	ENST00000373344	NM_000489.3	2041	agC/agG																																																																															
ATRX	546	MSKCC	GRCh37	X	76872093	76872093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	18	260	0	ENST00000373344.5:c.5554G>T	p.Asp1852Tyr	p.D1852Y	ENST00000373344	NM_000489.3	1852	Gat/Tat																																																																															
HGF	3082	MSKCC	GRCh37	7	81358986	81358986	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	58	394	0	ENST00000222390.5:c.975del	p.Cys326ValfsTer14	p.C326Vfs*14	ENST00000222390	NM_000601.4	325	ccA/cc																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43749707	43749707	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	TC			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	60	367	0	ENST00000523873.1:c.560delinsTC	p.Cys187PhefsTer17	p.C187Ffs*17	ENST00000523873		187	tGc/tTCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0044942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			585	141	561	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			554	96	323	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			496	217	476	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821989	72821989	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			470	81	338	0	ENST00000268489.5:c.10186C>A	p.Pro3396Thr	p.P3396T	ENST00000268489	NM_006885.3	3396	Ccc/Acc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910342	29910342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			805	191	660	0	ENST00000376809.5:c.12G>A	p.Met4Ile	p.M4I	ENST00000376809	NM_002116.7	4	atG/atA																																																																															
MTOR	2475	MSKCC	GRCh37	1	11288735	11288735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	117	419	0	ENST00000361445.4:c.3020C>T	p.Ala1007Val	p.A1007V	ENST00000361445	NM_004958.3	1007	gCc/gTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088659	27088659	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	172	452	0	ENST00000324856.7:c.2272delC	p.Gln758ArgfsTer75	p.Q758Rfs*75	ENST00000324856	NM_006015.4	756	aaC/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101612	27101612	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	177	639	1	ENST00000324856.7:c.4899del	p.Met1634Ter	p.M1634*	ENST00000324856	NM_006015.4	1632	Ccc/cc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100430	8100430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	161	661	0	ENST00000346208.3:c.404C>T	p.Pro135Leu	p.P135L	ENST00000346208		135	cCg/cTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717720	89717720	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	104	294	0	ENST00000371953.3:c.745del	p.Val249CysfsTer7	p.V249Cfs*7	ENST00000371953	NM_000314.4	249	Gtg/tg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	78	215	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	99	308	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118392850	118392850	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	84	321	0	ENST00000534358.1:c.11882A>G	p.Asn3961Ser	p.N3961S	ENST00000534358	NM_005933.3	3961	aAc/aGc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416994	416994	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	109	285	0	ENST00000399788.2:c.3556A>G	p.Asn1186Asp	p.N1186D	ENST00000399788	NM_001042603.1	1186	Aac/Gac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444809	49444809	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	162	729	0	ENST00000301067.7:c.2657delC	p.Pro886LeufsTer44	p.P886Lfs*44	ENST00000301067	NM_003482.3	886	cCt/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	109	434	1	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445883	49445883	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	251	772	0	ENST00000301067.7:c.1583del	p.Pro528HisfsTer402	p.P528Hfs*402	ENST00000301067	NM_003482.3	528	cCa/ca																																																																															
SETD8	387893	MSKCC	GRCh37	12	123874011	123874013	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs780061449		P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			14	13	29	0	ENST00000330479.4:c.62_64del	p.Ala21del	p.A21del	ENST00000330479	NM_020382.3	14	gaGGCg/gag																																																																															
MGA	23269	MSKCC	GRCh37	15	41989044	41989044	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	64	323	2	ENST00000219905.7:c.1840del	p.Arg614GlufsTer7	p.R614Efs*7	ENST00000219905	NM_001164273.1	612	ggA/gg																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	73	407	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	83	262	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	82	336	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	79	298	0	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475061	40475063	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	139	483	0	ENST00000264657.5:c.1847_1849del	p.Glu616del	p.E616del	ENST00000264657	NM_139276.2	616	gAAGga/gga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	132	608	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435313	56435313	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	129	497	0	ENST00000407977.2:c.1824del	p.Arg609GlyfsTer91	p.R609Gfs*91	ENST00000407977		608	ggG/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492791	56492792	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	152	413	0	ENST00000407977.2:c.147_148del	p.Arg49SerfsTer25	p.R49Sfs*25	ENST00000407977		49	agAGtg/agtg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533905	63533905	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	84	403	0	ENST00000307078.5:c.1249delG	p.Ala417ArgfsTer41	p.A417Rfs*41	ENST00000307078	NM_004655.3	417	Gcg/cg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554437	63554438	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	128	457	0	ENST00000307078.5:c.301_302del	p.Arg101GlyfsTer39	p.R101Gfs*39	ENST00000307078	NM_004655.3	101	AGg/g																																																																															
UPF1	5976	MSKCC	GRCh37	19	18966753	18966753	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	178	631	0	ENST00000262803.5:c.1564C>A	p.Pro522Thr	p.P522T	ENST00000262803	NM_002911.3	522	Ccg/Acg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228594	36228594	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	515	644	0	ENST00000222270.7:c.7612del	p.Ala2538ProfsTer76	p.A2538Pfs*76	ENST00000222270	NM_014727.1	2536	gaG/ga																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919765	50919765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	565	692	2	ENST00000440232.2:c.2933G>A	p.Arg978His	p.R978H	ENST00000440232	NM_002691.3	978	cGt/cAt																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085674	16085674	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	124	417	0	ENST00000281043.3:c.850A>T	p.Lys284Ter	p.K284*	ENST00000281043	NM_005378.4	284	Aag/Tag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467064	25467064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	137	585	1	ENST00000264709.3:c.1811G>A	p.Arg604Gln	p.R604Q	ENST00000264709	NM_175629.2	604	cGg/cAg																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873263	136873263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	82	242	0	ENST00000241393.3:c.235C>T	p.His79Tyr	p.H79Y	ENST00000241393	NM_003467.2	79	Cac/Tac																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266209	198266209	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	76	283	0	ENST00000335508.6:c.2411A>C	p.Asn804Thr	p.N804T	ENST00000335508	NM_012433.2	804	aAc/aCc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735457	40735457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	135	500	0	ENST00000373198.4:c.3416G>A	p.Arg1139Gln	p.R1139Q	ENST00000373198	NM_133170.3	1139	cGg/cAg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57478757	57478757	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	90	272	0	ENST00000371085.3:c.348del	p.Val117TrpfsTer16	p.V117Wfs*16	ENST00000371085	NM_000516.4	115	Ccc/cc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176351	24176351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	159	644	0	ENST00000263121.7:c.1142C>T	p.Thr381Met	p.T381M	ENST00000263121	NM_003073.3	381	aCg/aTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	62	244	0	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37089123	37089125	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	89	294	0	ENST00000231790.2:c.1852_1854delAAG	p.Lys618del	p.K618del	ENST00000231790	NM_000249.3	615	ctGAAg/ctg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	147	457	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																															
KIT	3815	MSKCC	GRCh37	4	55594212	55594212	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	101	297	0	ENST00000288135.5:c.1915T>A	p.Ser639Thr	p.S639T	ENST00000288135	NM_000222.2	639	Tct/Act																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557909	187557909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	140	359	0	ENST00000441802.2:c.3802C>T	p.Arg1268Trp	p.R1268W	ENST00000441802	NM_005245.3	1268	Cgg/Tgg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	138	460	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	123	659	3	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045990	26045990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	88	303	0	ENST00000540144.1:c.352G>A	p.Val118Ile	p.V118I	ENST00000540144	NM_003531.2	118	Gtc/Atc																																																																															
PIM1	5292	MSKCC	GRCh37	6	37141841	37141841	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	129	351	0	ENST00000373509.5:c.916A>C	p.Ser306Arg	p.S306R	ENST00000373509	NM_002648.3	306	Agc/Cgc																																																																															
FYN	2534	MSKCC	GRCh37	6	112017495	112017495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	88	225	0	ENST00000368678.4:c.1018G>A	p.Glu340Lys	p.E340K	ENST00000368678		340	Gag/Aag																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983228	149983228	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	109	459	0	ENST00000253339.5:c.3030delT	p.Phe1010LeufsTer10	p.F1010Lfs*10	ENST00000253339		1010	ttT/tt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265479	152265479	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766779326		P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	89	352	0	ENST00000206249.3:c.932C>T	p.Thr311Met	p.T311M	ENST00000206249	NM_000125.3	311	aCg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012386	152012386	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	75	229	0	ENST00000262189.6:c.427delA	p.Ser143ValfsTer3	p.S143Vfs*3	ENST00000262189	NM_170606.2	143	Agt/gt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5066767	5066768	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	49	178	0	ENST00000381652.3:c.1310dup	p.Leu437PhefsTer12	p.L437Ffs*12	ENST00000381652	NM_004972.3	435	tat/taTt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101904875	101904875	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	73	209	0	ENST00000374994.4:c.867del	p.Phe289LeufsTer4	p.F289Lfs*4	ENST00000374994	NM_004612.2	288	cTt/ct																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417580	139417580	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	212	803	0	ENST00000277541.6:c.464G>C	p.Cys155Ser	p.C155S	ENST00000277541	NM_017617.3	155	tGc/tCc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317421	1317421	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	140	372	1				ENST00000381566																																																																																		
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0045721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	54	469	15	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	171	304	5	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	230	656	13	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	31	126	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0045721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	80	204	3	ENST00000257430.4:c.4128T>A	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taA																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743762	46743762	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	216	517	7	ENST00000371975.4:c.2052T>G	p.Cys684Trp	p.C684W	ENST00000371975	NM_003579.3	684	tgT/tgG																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99170941	99170941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	70	420	6	ENST00000074304.5:c.1570G>A	p.Glu524Lys	p.E524K	ENST00000074304	NM_001134224.1	524	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0045724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	302	521	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
LMO1	4004	MSKCC	GRCh37	11	8251991	8251991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	164	691	4	ENST00000335790.3:c.86G>A	p.Arg29His	p.R29H	ENST00000335790	NM_002315.2	29	cGc/cAc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859626	57859626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	106	492	0	ENST00000228682.2:c.680G>A	p.Arg227His	p.R227H	ENST00000228682	NM_005269.2	227	cGt/cAt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162394444	162394444	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	91	234	0	ENST00000366898.1:c.624T>G	p.Phe208Leu	p.F208L	ENST00000366898	NM_004562.2	208	ttT/ttG																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119966	70120018	+	frameshift_variant	Frame_Shift_Del	DEL	GCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	GCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	-			P-0045724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	40	304	0	ENST00000245479.2:c.970_1022del	p.Thr324AlafsTer236	p.T324Afs*236	ENST00000245479	NM_000346.3	323	aGCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG/a																																																																															
CDK12	51755	MSKCC	GRCh37	17	37681031	37681031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143648695		P-0045724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	69	355	0	ENST00000447079.4:c.3200G>A	p.Arg1067Gln	p.R1067Q	ENST00000447079	NM_015083.1	1067	cGa/cAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40979271	40979271	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	86	410	0	ENST00000373198.4:c.1862T>C	p.Val621Ala	p.V621A	ENST00000373198	NM_133170.3	621	gTc/gCc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46271105	46271105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	131	353	0	ENST00000371998.3:c.3229G>A	p.Gly1077Ser	p.G1077S	ENST00000371998		1077	Ggc/Agc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	22	297	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856529	111856529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	18	238	0	ENST00000341259.2:c.580G>A	p.Glu194Lys	p.E194K	ENST00000341259	NM_005475.2	194	Gag/Aag																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026915	6026915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	10	113	0	ENST00000265849.7:c.1481C>T	p.Ser494Leu	p.S494L	ENST00000265849	NM_000535.5	494	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	127	239	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0045845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	123	401	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038846	47038846	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	161	270	0	ENST00000329236.7:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000329236	NM_001204466.1	208	Caa/Taa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968823	15968823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	100	332	0	ENST00000268712.3:c.4927G>T	p.Gly1643Cys	p.G1643C	ENST00000268712	NM_006311.3	1643	Ggt/Tgt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53243870	53243870	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0045845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	125	194	0	ENST00000375401.3:c.1122+1G>A		p.X374_splice	ENST00000375401	NM_004187.3	374																																																																																
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0045847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	165	391	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214612	5214612	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139132124		P-0045847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	197	514	2	ENST00000357368.4:c.4454C>T	p.Ala1485Val	p.A1485V	ENST00000357368	NM_002850.3	1485	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112174437	112174437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs876658667		P-0045847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	38	152	0	ENST00000257430.4:c.3146G>A	p.Trp1049Ter	p.W1049*	ENST00000257430	NM_000038.5	1049	tGg/tAg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103525619	103525619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	67	196	0	ENST00000355739.4:c.2890C>T	p.Arg964Trp	p.R964W	ENST00000355739	NM_000123.3	964	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	32	300	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0045849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	34	291	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	65	530	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410072	63410072	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	48	648	0	ENST00000330258.3:c.3095del	p.Pro1032LeufsTer13	p.P1032Lfs*13	ENST00000330258	NM_152424.3	1032	cCt/ct																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0045850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	50	239	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0045850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	97	360	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680721	30680721	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61748586		P-0045850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	39	346	0	ENST00000376406.3:c.998C>T	p.Ala333Val	p.A333V	ENST00000376406	NM_014641.2	333	gCg/gTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247328	153247328	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	88	178	0	ENST00000281708.4:c.1474C>T	p.Gln492Ter	p.Q492*	ENST00000281708	NM_033632.3	492	Cag/Tag																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798968	45798968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	52	459	0	ENST00000372115.3:c.335G>A	p.Arg112Gln	p.R112Q	ENST00000372115	NM_001048171.1	112	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247344	153247344	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	31	176	0	ENST00000281708.4:c.1458G>T	p.Trp486Cys	p.W486C	ENST00000281708	NM_033632.3	486	tgG/tgT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602347	10602347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	114	599	0	ENST00000171111.5:c.1231G>A	p.Val411Met	p.V411M	ENST00000171111	NM_203500.1	411	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	43	252	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207077	1207077	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	104	461	0	ENST00000326873.7:c.169del	p.Glu57LysfsTer7	p.E57Kfs*7	ENST00000326873	NM_000455.4	55	ctG/ct																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602698	10602698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	90	588	0	ENST00000171111.5:c.880G>T	p.Asp294Tyr	p.D294Y	ENST00000171111	NM_203500.1	294	Gac/Tac																																																																															
TEK	7010	MSKCC	GRCh37	9	27212732	27212732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	76	389	0	ENST00000380036.4:c.2714C>T	p.Ala905Val	p.A905V	ENST00000380036	NM_000459.3	905	gCg/gTg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469530	25469530	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	81	520	0	ENST00000264709.3:c.1238del	p.Gly413AlafsTer238	p.G413Afs*238	ENST00000264709	NM_175629.2	413	gGc/gc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138548	11138548	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	83	422	0	ENST00000344626.4:c.3304T>C	p.Phe1102Leu	p.F1102L	ENST00000344626	NM_003072.3	1102	Ttc/Ctc																																																																															
MGA	23269	MSKCC	GRCh37	15	42041722	42041722	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	27	277	0	ENST00000219905.7:c.5917C>T	p.Gln1973Ter	p.Q1973*	ENST00000219905	NM_001164273.1	1973	Cag/Tag																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868193	45868193	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	367	510	0	ENST00000391945.4:c.497G>C	p.Arg166Pro	p.R166P	ENST00000391945	NM_000400.3	166	cGt/cCt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714542	52714542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	87	441	0	ENST00000322088.6:c.300G>C	p.Glu100Asp	p.E100D	ENST00000322088	NM_014225.5	100	gaG/gaC																																																																															
JAK2	3717	MSKCC	GRCh37	9	5050722	5050722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	66	243	2	ENST00000381652.3:c.505C>T	p.Pro169Ser	p.P169S	ENST00000381652	NM_004972.3	169	Cct/Tct																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21994225	21994225	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	96	452	0	ENST00000361570.3:c.229G>T	p.Ala77Ser	p.A77S	ENST00000361570	NM_058195.3	77	Gcg/Tcg																																																																															
MED12	9968	MSKCC	GRCh37	X	70345287	70345289	+	missense_variant	Missense_Mutation	ONP	CAA	CAA	GAG			P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	27	407	0	ENST00000374080.3:c.2313_2315delinsGAG	p.Ile771_Lys772delinsMetArg	p.I771_K772delinsMR	ENST00000374080		771	atCAAg/atGAGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	201	412	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	29	300	1	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8524968	8524968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	35	201	0	ENST00000356435.5:c.636C>A	p.Ser212Arg	p.S212R	ENST00000356435		212	agC/agA																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149456932	149456932	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148357861		P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	87	338	0	ENST00000286301.3:c.796G>A	p.Asp266Asn	p.D266N	ENST00000286301	NM_005211.3	266	Gat/Aat																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56488225	56488225	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	69	373	1	ENST00000267101.3:c.1744G>T	p.Gly582Trp	p.G582W	ENST00000267101	NM_001982.3	582	Ggg/Tgg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727487	88727487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	103	416	0	ENST00000360948.2:c.292G>T	p.Asp98Tyr	p.D98Y	ENST00000360948	NM_001012338.2	98	Gac/Tac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790123	40790123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	71	411	2	ENST00000373198.4:c.2608C>T	p.Arg870Cys	p.R870C	ENST00000373198	NM_133170.3	870	Cgc/Tgc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371662	55371662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	30	404	0	ENST00000297316.4:c.352G>A	p.Val118Met	p.V118M	ENST00000297316	NM_022454.3	118	Gtg/Atg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287202	46287202	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	14	220	0	ENST00000334344.6:c.5148-1G>T		p.X1716_splice	ENST00000334344	NM_152641.2	1716																																																																																
RPTOR	57521	MSKCC	GRCh37	17	78921093	78921093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	31	367	1	ENST00000306801.3:c.3207G>T	p.Arg1069Ser	p.R1069S	ENST00000306801	NM_020761.2	1069	agG/agT																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575108	48575108	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	51	223	0	ENST00000342988.3:c.302G>T	p.Trp101Leu	p.W101L	ENST00000342988	NM_005359.5	101	tGg/tTg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852308	63852308	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	91	366	0	ENST00000279873.7:c.3088del	p.Ala1030GlnfsTer5	p.A1030Qfs*5	ENST00000279873	NM_032199.2	1029	cGg/cg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270165	66270165	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	46	203	0	ENST00000273854.3:c.1717C>A	p.Pro573Thr	p.P573T	ENST00000273854	NM_004439.5	573	Cct/Act																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945081	31945081	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	83	372	0	ENST00000340398.3:c.20C>A	p.Thr7Asn	p.T7N	ENST00000340398	NM_001013699.2	7	aCt/aAt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81528511	81528511	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	21	212	0	ENST00000298171.2:c.190C>A	p.Leu64Met	p.L64M	ENST00000298171	NM_000369.2	64	Ctg/Atg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356335	66356335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	50	269	0	ENST00000273854.3:c.1162G>T	p.Asp388Tyr	p.D388Y	ENST00000273854	NM_004439.5	388	Gac/Tac																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411091	63411091	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	36	191	0	ENST00000330258.3:c.2076G>T	p.Glu692Asp	p.E692D	ENST00000330258	NM_152424.3	692	gaG/gaT																																																																															
IDH2	3418	MSKCC	GRCh37	15	90634797	90634797	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	35	320	0	ENST00000330062.3:c.195C>A	p.Phe65Leu	p.F65L	ENST00000330062	NM_002168.2	65	ttC/ttA																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522014	157522014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	32	402	0	ENST00000346085.5:c.4286G>T	p.Arg1429Met	p.R1429M	ENST00000346085	NM_020732.3	1429	aGg/aTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55955906	55955906	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	46	286	0	ENST00000263923.4:c.3256A>T	p.Ser1086Cys	p.S1086C	ENST00000263923	NM_002253.2	1086	Agt/Tgt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462852	120462852	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	27	185	0	ENST00000256646.2:c.5479G>T	p.Asp1827Tyr	p.D1827Y	ENST00000256646	NM_024408.3	1827	Gat/Tat																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156836771	156836771	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	60	443	1	ENST00000524377.1:c.428+1G>T		p.X143_splice	ENST00000524377	NM_002529.3	143																																																																																
NUF2	83540	MSKCC	GRCh37	1	163317592	163317592	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	11	191	0	ENST00000271452.3:c.988G>T	p.Glu330Ter	p.E330*	ENST00000271452	NM_145697.2	330	Gaa/Taa																																																																															
FH	2271	MSKCC	GRCh37	1	241665871	241665871	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	23	235	0	ENST00000366560.3:c.1109-1G>C		p.X370_splice	ENST00000366560	NM_000143.3	370																																																																																
TET1	80312	MSKCC	GRCh37	10	70406117	70406117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	24	328	0	ENST00000373644.4:c.3631G>A	p.Gly1211Arg	p.G1211R	ENST00000373644	NM_030625.2	1211	Ggg/Agg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46211474	46211474	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	18	157	0	ENST00000334344.6:c.440G>T	p.Gly147Val	p.G147V	ENST00000334344	NM_152641.2	147	gGg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428372	49428372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	80	440	0	ENST00000301067.7:c.10433G>T	p.Ser3478Ile	p.S3478I	ENST00000301067	NM_003482.3	3478	aGt/aTt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863354	57863354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	96	476	0	ENST00000228682.2:c.1449G>T	p.Glu483Asp	p.E483D	ENST00000228682	NM_005269.2	483	gaG/gaT																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112412	115112412	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	88	361	0	ENST00000257566.3:c.1328C>A	p.Ser443Ter	p.S443*	ENST00000257566	NM_016569.3	443	tCg/tAg																																																																															
POLE	5426	MSKCC	GRCh37	12	133249278	133249278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	90	416	0	ENST00000320574.5:c.1621G>T	p.Gly541Trp	p.G541W	ENST00000320574	NM_006231.2	541	Ggg/Tgg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589323	28589323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	28	213	0	ENST00000241453.7:c.2724G>T	p.Met908Ile	p.M908I	ENST00000241453	NM_004119.2	908	atG/atT																																																																															
FLT3	2322	MSKCC	GRCh37	13	28636038	28636038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	63	401	2	ENST00000241453.7:c.334C>A	p.Leu112Met	p.L112M	ENST00000241453	NM_004119.2	112	Ctg/Atg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906807	32906807	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	47	397	0	ENST00000380152.3:c.1192C>G	p.Leu398Val	p.L398V	ENST00000380152		398	Cta/Gta																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281089	49281089	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	46	391	0	ENST00000282018.3:c.136C>G	p.Leu46Val	p.L46V	ENST00000282018	NM_020377.2	46	Ctg/Gtg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438155	110438155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	27	172	0	ENST00000375856.3:c.246G>T	p.Trp82Cys	p.W82C	ENST00000375856	NM_003749.2	82	tgG/tgT																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68292201	68292201	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	34	204	0	ENST00000487270.1:c.105del	p.Leu36TrpfsTer4	p.L36Wfs*4	ENST00000487270	NM_133509.3	35	ccA/cc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81606159	81606159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	43	326	0	ENST00000298171.2:c.829C>T	p.Leu277Phe	p.L277F	ENST00000298171	NM_000369.2	277	Ctt/Ttt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610123	81610123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	45	292	0	ENST00000298171.2:c.1721C>A	p.Thr574Asn	p.T574N	ENST00000298171	NM_000369.2	574	aCc/aAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42059449	42059450	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	51	272	1	ENST00000219905.7:c.9169_9170delinsTT	p.Gly3057Leu	p.G3057L	ENST00000219905	NM_001164273.1	3057	GGg/TTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781320	3781320	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	74	539	0	ENST00000262367.5:c.5045G>C	p.Arg1682Pro	p.R1682P	ENST00000262367	NM_004380.2	1682	cGc/cCc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857399	9857399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	38	298	0	ENST00000330684.3:c.4002C>A	p.Ser1334Arg	p.S1334R	ENST00000330684	NM_001134407.1	1334	agC/agA																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029395	14029395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	42	227	1	ENST00000311895.7:c.1606G>T	p.Val536Leu	p.V536L	ENST00000311895	NM_005236.2	536	Gta/Tta																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641301	23641301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	69	413	0	ENST00000261584.4:c.2174C>T	p.Ser725Leu	p.S725L	ENST00000261584	NM_024675.3	725	tCa/tTa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783870	50783870	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	37	395	0	ENST00000398568.2:c.261G>T	p.Lys87Asn	p.K87N	ENST00000398568	NM_001042412.1	87	aaG/aaT																																																																															
EZH1	2145	MSKCC	GRCh37	17	40874855	40874855	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	43	348	1	ENST00000428826.2:c.445G>T	p.Glu149Ter	p.E149*	ENST00000428826		149	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602854	10602854	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	59	505	0	ENST00000171111.5:c.724G>C	p.Glu242Gln	p.E242Q	ENST00000171111	NM_203500.1	242	Gag/Cag																																																																															
ALK	238	MSKCC	GRCh37	2	29519785	29519785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	56	325	0	ENST00000389048.3:c.1786A>G	p.Met596Val	p.M596V	ENST00000389048	NM_004304.4	596	Atg/Gtg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46588109	46588109	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	177	448	1	ENST00000263734.3:c.659C>A	p.Ser220Tyr	p.S220Y	ENST00000263734	NM_001430.4	220	tCc/tAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212286777	212286777	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	33	237	1	ENST00000342788.4:c.2919G>T	p.Glu973Asp	p.E973D	ENST00000342788	NM_005235.2	973	gaG/gaT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212286805	212286805	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	36	216	0	ENST00000342788.4:c.2891G>C	p.Arg964Thr	p.R964T	ENST00000342788	NM_005235.2	964	aGa/aCa																																																																															
INHA	3623	MSKCC	GRCh37	2	220439824	220439824	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	98	564	0	ENST00000243786.2:c.677G>T	p.Gly226Val	p.G226V	ENST00000243786	NM_002191.3	226	gGa/gTa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660718	227660718	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	200	486	0	ENST00000305123.5:c.2737G>T	p.Val913Leu	p.V913L	ENST00000305123	NM_005544.2	913	Gtg/Ttg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40710554	40710554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	69	450	1	ENST00000373198.4:c.4297C>A	p.Arg1433Ser	p.R1433S	ENST00000373198	NM_133170.3	1433	Cgt/Agt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46251026	46251026	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	44	202	0	ENST00000371998.3:c.35C>G	p.Ala12Gly	p.A12G	ENST00000371998		12	gCc/gGc																																																																															
ERG	2078	MSKCC	GRCh37	21	39795449	39795449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144012510		P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	139	426	1	ENST00000288319.7:c.271G>A	p.Gly91Arg	p.G91R	ENST00000288319	NM_182918.3	91	Ggg/Agg																																																																															
NF2	4771	MSKCC	GRCh37	22	30057222	30057222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	73	300	0	ENST00000338641.4:c.704G>C	p.Gly235Ala	p.G235A	ENST00000338641	NM_000268.3	235	gGa/gCa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098342	47098342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	43	292	0	ENST00000409792.3:c.6932C>T	p.Pro2311Leu	p.P2311L	ENST00000409792	NM_014159.6	2311	cCt/cTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163851	47163851	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	29	299	0	ENST00000409792.3:c.2275A>T	p.Lys759Ter	p.K759*	ENST00000409792	NM_014159.6	759	Aaa/Taa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637750	52637750	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	28	211	0	ENST00000394830.3:c.2568-2A>T		p.X856_splice	ENST00000394830	NM_018313.4	856																																																																																
PDGFRA	5156	MSKCC	GRCh37	4	55127391	55127392	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	69	343	1	ENST00000257290.5:c.179_180delinsAG	p.Pro60Gln	p.P60Q	ENST00000257290	NM_006206.4	60	cCC/cAG																																																																															
KDR	3791	MSKCC	GRCh37	4	55984770	55984770	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	45	249	0	ENST00000263923.4:c.358+1G>C		p.X120_splice	ENST00000263923	NM_002253.2	120																																																																																
SDHA	6389	MSKCC	GRCh37	5	233622	233622	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	27	174	0	ENST00000264932.6:c.926A>G	p.Glu309Gly	p.E309G	ENST00000264932	NM_004168.2	309	gAa/gGa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31449450	31449450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	40	304	0	ENST00000344624.3:c.2759G>T	p.Cys920Phe	p.C920F	ENST00000344624		920	tGt/tTt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56170970	56170970	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	18	205	0	ENST00000399503.3:c.1798G>T	p.Gly600Trp	p.G600W	ENST00000399503	NM_005921.1	600	Ggg/Tgg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517519	176517519	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	78	530	0	ENST00000292408.4:c.220G>C	p.Ala74Pro	p.A74P	ENST00000292408	NM_213647.1	74	Gca/Cca																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056145	26056145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	62	310	0	ENST00000343677.2:c.512C>A	p.Ala171Asp	p.A171D	ENST00000343677	NM_005319.3	171	gCt/gAt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120222	94120222	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	13	181	0	ENST00000369303.4:c.829G>T	p.Glu277Ter	p.E277*	ENST00000369303	NM_004440.3	277	Gaa/Taa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163779	152163779	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	48	282	0	ENST00000206249.3:c.500G>T	p.Ser167Ile	p.S167I	ENST00000206249	NM_000125.3	167	aGt/aTt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157454173	157454174	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	38	246	0	ENST00000346085.5:c.2383_2384delinsTT	p.Gly795Phe	p.G795F	ENST00000346085	NM_020732.3	795	GGc/TTc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528860	157528860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	73	363	0	ENST00000346085.5:c.6585G>T	p.Met2195Ile	p.M2195I	ENST00000346085	NM_020732.3	2195	atG/atT																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969983	161969983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	50	351	0	ENST00000366898.1:c.986G>T	p.Gly329Val	p.G329V	ENST00000366898	NM_004562.2	329	gGc/gTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268081	55268081	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	106	438	0	ENST00000275493.2:c.2921A>T	p.Asp974Val	p.D974V	ENST00000275493	NM_005228.3	974	gAc/gTc																																																																															
HGF	3082	MSKCC	GRCh37	7	81335673	81335673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	17	260	0	ENST00000222390.5:c.1687C>A	p.Gln563Lys	p.Q563K	ENST00000222390	NM_000601.4	563	Cag/Aag																																																																															
MET	4233	MSKCC	GRCh37	7	116339884	116339884	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	33	294	0	ENST00000397752.3:c.746A>T	p.Tyr249Phe	p.Y249F	ENST00000397752	NM_000245.2	249	tAt/tTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453143	140453143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	28	225	0	ENST00000288602.6:c.1792G>A	p.Ala598Thr	p.A598T	ENST00000288602	NM_004333.4	598	Gct/Act																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151960208	151960208	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	12	124	0	ENST00000262189.6:c.1192G>T	p.Gly398Ter	p.G398*	ENST00000262189	NM_170606.2	398	Gga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012277	152012277	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	37	318	0	ENST00000262189.6:c.536G>T	p.Gly179Val	p.G179V	ENST00000262189	NM_170606.2	179	gGa/gTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507389	8507389	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	30	228	0	ENST00000356435.5:c.1589C>G	p.Thr530Arg	p.T530R	ENST00000356435		530	aCa/aGa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413240	139413240	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	118	545	0	ENST00000277541.6:c.902T>A	p.Leu301Gln	p.L301Q	ENST00000277541	NM_017617.3	301	cTg/cAg																																																																															
AR	367	MSKCC	GRCh37	X	66765620	66765620	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	53	247	0	ENST00000374690.3:c.632C>G	p.Ala211Gly	p.A211G	ENST00000374690	NM_000044.3	211	gCg/gGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0045865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	146	415	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0045865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	208	343	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	165	529	0	ENST00000326873.7:c.667G>A	p.Glu223Lys	p.E223K	ENST00000326873	NM_000455.4	223	Gag/Aag																																																																															
MLH1	4292	MSKCC	GRCh37	3	37090482	37090482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	24	250	0	ENST00000231790.2:c.2077G>C	p.Glu693Gln	p.E693Q	ENST00000231790	NM_000249.3	693	Gag/Cag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391896	139391896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	185	573	1	ENST00000277541.6:c.6295G>A	p.Asp2099Asn	p.D2099N	ENST00000277541	NM_017617.3	2099	Gac/Aac																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041751	29041751	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	14	208	0	ENST00000282397.4:c.68C>G	p.Ser23Cys	p.S23C	ENST00000282397	NM_002019.4	23	tCt/tGt																																																																															
BIRC3	330	MSKCC	GRCh37	11	102206939	102206939	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	16	144	0	ENST00000263464.3:c.1567G>C	p.Glu523Gln	p.E523Q	ENST00000263464	NM_001165.4	523	Gag/Cag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16062082	16062082	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	29	257	0	ENST00000268712.3:c.724G>C	p.Glu242Gln	p.E242Q	ENST00000268712	NM_006311.3	242	Gag/Cag																																																																															
ATRX	546	MSKCC	GRCh37	X	76937906	76937906	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	28	341	0	ENST00000373344.5:c.2842C>A	p.His948Asn	p.H948N	ENST00000373344	NM_000489.3	948	Cat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	34	277	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484596	57484596	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	17	306	0	ENST00000371085.3:c.680A>T	p.Gln227Leu	p.Q227L	ENST00000371085	NM_000516.4	227	cAg/cTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0045867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	77	189	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACCCCC			P-0045867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	418	352	0	ENST00000275493.2:c.2311_2319dup	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	gac/gACAACCCCCac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	216	390	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78444662	78444663	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGA			P-0045867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	159	307	0	ENST00000370768.2:c.24_26dup	p.Pro10dup	p.P10dup	ENST00000370768	NM_003902.3	10	ccc/ccTCCc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3841996	3841996	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	151	194	0	ENST00000262367.5:c.1316A>T	p.Lys439Met	p.K439M	ENST00000262367	NM_004380.2	439	aAg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259475	55259475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	455	264	0	ENST00000275493.2:c.2533G>T	p.Val845Leu	p.V845L	ENST00000275493	NM_005228.3	845	Gtg/Ttg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55270181	55270237	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGTAACCTTCCCTCATTTCCTCCTGCAGCTGCAAAGCTGTCCCATCAAGGAAGACA	GAGTAACCTTCCCTCATTTCCTCCTGCAGCTGCAAAGCTGTCCCATCAAGGAAGACA	-			P-0045867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	545	414	0	ENST00000275493.2:c.3163-28_3191del		p.X1055_splice	ENST00000275493	NM_005228.3	1055																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	15	213	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	27	275	0	ENST00000269305.4:c.808T>C	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	Ttt/Ctt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	176	554	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0045887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	68	355	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584514	48584514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	117	368	0	ENST00000342988.3:c.692delG	p.Gly231AlafsTer10	p.G231Afs*10	ENST00000342988	NM_005359.5	229	ctG/ct																																																																															
PGR	5241	MSKCC	GRCh37	11	100996782	100996782	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	142	403	0	ENST00000325455.5:c.1745T>A	p.Leu582His	p.L582H	ENST00000325455	NM_001202474.3	582	cTt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0045888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	115	311	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0045888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	210	375	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519930		P-0045888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	145	417	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0045888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	88	316	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0045888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	73	195	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028619	12028619	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	39	302	0	ENST00000353533.5:c.822A>C	p.Arg274Ser	p.R274S	ENST00000353533	NM_003010.3	274	agA/agC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575162	48575162	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	103	307	0	ENST00000342988.3:c.356T>G	p.Phe119Cys	p.F119C	ENST00000342988	NM_005359.5	119	tTt/tGt																																																																															
UPF1	5976	MSKCC	GRCh37	19	18966012	18966012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	150	495	0	ENST00000262803.5:c.1505C>T	p.Ser502Leu	p.S502L	ENST00000262803	NM_002911.3	502	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0045893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	184	485	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0045893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	141	281	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376443	118376444	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	61	408	0	ENST00000534358.1:c.9838dup	p.Ser3280PhefsTer14	p.S3280Ffs*14	ENST00000534358	NM_005933.3	3279	act/acTt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0045894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	115	247	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0045894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	91	271	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0045894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	97	320	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	217	512	0	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522751	67522751	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	86	223	0	ENST00000274335.5:c.248C>A	p.Ser83Ter	p.S83*	ENST00000274335		83	tCg/tAg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435145	18435145	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	87	290	0	ENST00000266497.5:c.130G>C	p.Val44Leu	p.V44L	ENST00000266497		44	Gta/Cta																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143159161	143159161	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0045894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	41	190	0	ENST00000262992.4:c.692T>G	p.Leu231Ter	p.L231*	ENST00000262992	NM_001101669.1	231	tTa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0045896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	190	406	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0045896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	47	204	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0045896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	18	326	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53231106	53231106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	25	213	1	ENST00000375401.3:c.1796G>A	p.Arg599His	p.R599H	ENST00000375401	NM_004187.3	599	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175271	112175271	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	41	201	0	ENST00000257430.4:c.3980C>A	p.Ser1327Ter	p.S1327*	ENST00000257430	NM_000038.5	1327	tCa/tAa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48018193	48018193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	101	388	0	ENST00000234420.5:c.388C>T	p.His130Tyr	p.H130Y	ENST00000234420	NM_000179.2	130	Cat/Tat																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535316	66535316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	41	401	1	ENST00000273854.3:c.145G>A	p.Ala49Thr	p.A49T	ENST00000273854	NM_004439.5	49	Gca/Aca																																																																															
ALK	238	MSKCC	GRCh37	2	30143404	30143404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	83	349	0	ENST00000389048.3:c.122G>A	p.Arg41Gln	p.R41Q	ENST00000389048	NM_004304.4	41	cGg/cAg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794374	242794374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	144	505	0	ENST00000334409.5:c.568G>A	p.Val190Ile	p.V190I	ENST00000334409	NM_005018.2	190	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	510	682	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0045908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	881	337	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47058705	47058706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	339	438	2	ENST00000409792.3:c.7572dup	p.Lys2525Ter	p.K2525*	ENST00000409792	NM_014159.6	2524	-/T																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910239	50910239	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0045908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	357	597	0	ENST00000440232.2:c.1495-1G>C		p.X499_splice	ENST00000440232	NM_002691.3	499																																																																																
PIK3CB	5291	MSKCC	GRCh37	3	138453578	138453578	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	55	353	0	ENST00000289153.2:c.870G>C	p.Lys290Asn	p.K290N	ENST00000289153	NM_006219.2	290	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0045909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	132	702	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128199873	128199873	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780263343		P-0045909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	45	500	0	ENST00000341105.2:c.1432G>A	p.Ala478Thr	p.A478T	ENST00000341105	NM_032638.4	478	Gcc/Acc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81891957	81891957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	24	402	0	ENST00000359376.3:c.427G>A	p.Glu143Lys	p.E143K	ENST00000359376	NM_002661.3	143	Gag/Aag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660789	227660789	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	35	535	0	ENST00000305123.5:c.2666A>G	p.Glu889Gly	p.E889G	ENST00000305123	NM_005544.2	889	gAg/gGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0045911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	36	442	1	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0045911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	18	383	0	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
DNMT1	1786	MSKCC	GRCh37	19	10246414	10246414	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0042887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	107	688	0	ENST00000340748.4:c.4723C>T	p.Gln1575Ter	p.Q1575*	ENST00000340748		1575	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115953	8115957	+	frameshift_variant	Frame_Shift_Del	DEL	CCACC	CCACC	-			P-0042887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	86	355	1	ENST00000346208.3:c.1301_1305del	p.His434LeufsTer71	p.H434Lfs*71	ENST00000346208		433	caCCACCcc/cacc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0045580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	83	660	4	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0045580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	57	316	4	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906786	50906786	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778843530		P-0045580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	103	690	5	ENST00000440232.2:c.1174G>A	p.Val392Met	p.V392M	ENST00000440232	NM_002691.3	392	Gtg/Atg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32893340	32893340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	77	340	3	ENST00000380152.3:c.194C>T	p.Pro65Leu	p.P65L	ENST00000380152		65	cCa/cTa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117638317	117638317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	57	350	0	ENST00000368508.3:c.6124C>T	p.Arg2042Trp	p.R2042W	ENST00000368508	NM_002944.2	2042	Cgg/Tgg																																																																															
MGA	23269	MSKCC	GRCh37	15	41962081	41962082	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	32	397	1	ENST00000219905.7:c.990dup	p.Asp331ArgfsTer9	p.D331Rfs*9	ENST00000219905	NM_001164273.1	330	cga/cgAa																																																																															
APC	324	MSKCC	GRCh37	5	112175587	112175632	+	frameshift_variant	Frame_Shift_Del	DEL	ACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAA	ACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAA	-			P-0045580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	45	356	1	ENST00000257430.4:c.4303_4348del	p.Arg1435GlufsTer23	p.R1435Efs*23	ENST00000257430	NM_000038.5	1432	ccACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAA/cc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292430	15292430	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs150338460		P-0045626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	217	771	0	ENST00000263388.2:c.2749G>C	p.Gly917Arg	p.G917R	ENST00000263388	NM_000435.2	917	Gga/Cga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100096	157100110	+	inframe_deletion	In_Frame_Del	DEL	GCGGCGGCGGCAGCA	GCGGCGGCGGCAGCA	-			P-0045626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	35	21	0	ENST00000346085.5:c.1035_1049del	p.Ala346_Ala350del	p.A346_A350del	ENST00000346085	NM_020732.3	345	GCGGCGGCGGCAGCA/-																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226252066	226252068	+	inframe_deletion	In_Frame_Del	DEL	AGC	AGC	-			P-0045632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	116	207	0	ENST00000366813.1:c.16_18del	p.Gln6del	p.Q6del	ENST00000366813		5	aAGCag/aag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67663315	67663315	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	95	273	0	ENST00000264010.4:c.1716A>C	p.Arg572Ser	p.R572S	ENST00000264010	NM_006565.3	572	agA/agC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0044379-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			721	242	634	0	ENST00000269305.4:c.560-2A>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
HIST3H3	8290	MSKCC	GRCh37	1	228612890	228612890	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044379-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			802	597	824	0	ENST00000366696.1:c.137C>A	p.Thr46Lys	p.T46K	ENST00000366696	NM_003493.2	46	aCg/aAg																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0045635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	20	298	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108141986	108141986	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	22	365	0	ENST00000278616.4:c.2930G>T	p.Cys977Phe	p.C977F	ENST00000278616	NM_000051.3	977	tGt/tTt																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72076754	72076754	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	30	446	0	ENST00000357731.5:c.743C>A	p.Ala248Glu	p.A248E	ENST00000357731	NM_173808.2	248	gCa/gAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542258	187542258	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	18	337	0	ENST00000441802.2:c.5482G>C	p.Ala1828Pro	p.A1828P	ENST00000441802	NM_005245.3	1828	Gct/Cct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398287	+	missense_variant	Missense_Mutation	ONP	CCAG	CCAG	TCAA			P-0045635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	44	322	0	ENST00000256078.4:c.32_35delinsTTGA	p.Ala11_Gly12delinsValAsp	p.A11_G12delinsVD	ENST00000256078	NM_033360.2	11	gCTGGt/gTTGAt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	317	481	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727451	66727451	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519729		P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	161	431	0	ENST00000307102.5:c.167A>C	p.Gln56Pro	p.Q56P	ENST00000307102	NM_002755.3	56	cAg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	222	597	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
SYK	6850	MSKCC	GRCh37	9	93641221	93641221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	40	304	0	ENST00000375746.1:c.1567G>A	p.Glu523Lys	p.E523K	ENST00000375746	NM_001174167.1	523	Gaa/Aaa																																																																															
TET1	80312	MSKCC	GRCh37	10	70412256	70412256	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	22	169	0	ENST00000373644.4:c.4368-2A>T		p.X1456_splice	ENST00000373644	NM_030625.2	1456																																																																																
PGR	5241	MSKCC	GRCh37	11	100999450	100999450	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	235	897	0	ENST00000325455.5:c.352C>A	p.Leu118Met	p.L118M	ENST00000325455	NM_001202474.3	118	Ctg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443670	49443670	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	168	683	0	ENST00000301067.7:c.3701G>T	p.Gly1234Val	p.G1234V	ENST00000301067	NM_003482.3	1234	gGg/gTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133220147	133220147	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	168	569	0	ENST00000320574.5:c.4291-1G>T		p.X1431_splice	ENST00000320574	NM_006231.2	1431																																																																																
AXL	558	MSKCC	GRCh37	19	41754479	41754479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	306	680	0	ENST00000301178.4:c.1598G>T	p.Arg533Leu	p.R533L	ENST00000301178	NM_021913.4	533	cGg/cTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023771	31023771	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	207	626	0	ENST00000375687.4:c.3256G>T	p.Glu1086Ter	p.E1086*	ENST00000375687	NM_015338.5	1086	Gag/Tag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127281	55127282	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	54	380	0	ENST00000257290.5:c.69_70delinsAA	p.Cys23_Gln24delinsTer	p.C23_Q24delins*	ENST00000257290	NM_006206.4	23	tgCCag/tgAAag																																																																															
TERT	7015	MSKCC	GRCh37	5	1278901	1278901	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	192	608	0	ENST00000310581.5:c.2141C>A	p.Thr714Lys	p.T714K	ENST00000310581	NM_198253.2	714	aCg/aAg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38942465	38942465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	41	338	0	ENST00000357387.3:c.5068G>A	p.Glu1690Lys	p.E1690K	ENST00000357387	NM_152756.3	1690	Gag/Aag																																																																															
SMO	6608	MSKCC	GRCh37	7	128845471	128845471	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	191	664	0	ENST00000249373.3:c.768G>T	p.Trp256Cys	p.W256C	ENST00000249373	NM_005631.4	256	tgG/tgT																																																																															
PREX2	80243	MSKCC	GRCh37	8	68939469	68939469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	35	297	0	ENST00000288368.4:c.454C>T	p.Leu152Phe	p.L152F	ENST00000288368	NM_024870.2	152	Ctt/Ttt																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864337	117864337	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	73	292	0	ENST00000297338.2:c.1322-2A>T		p.X441_splice	ENST00000297338	NM_006265.2	441																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178916928	178916936	+	inframe_deletion	In_Frame_Del	DEL	AGGCAACCG	AGGCAACCG	-			P-0045640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	39	334	0	ENST00000263967.3:c.315_323del	p.Gly106_Arg108del	p.G106_R108del	ENST00000263967	NM_006218.2	105	gtAGGCAACCGt/gtt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49939848	49939848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	61	681	1	ENST00000296474.3:c.1195G>A	p.Asp399Asn	p.D399N	ENST00000296474	NM_002447.2	399	Gac/Aac																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467862	99467862	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	22	270	0	ENST00000268035.6:c.2731T>C	p.Ser911Pro	p.S911P	ENST00000268035	NM_000875.3	911	Tct/Cct																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168750	56168751	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0045640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	26	353	0	ENST00000399503.3:c.1604_1605del	p.Gln535ArgfsTer5	p.Q535Rfs*5	ENST00000399503	NM_005921.1	535	cAA/c																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180542	56180542	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	30	241	0	ENST00000399503.3:c.3871del	p.Leu1291Ter	p.L1291*	ENST00000399503	NM_005921.1	1291	Cta/ta																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836780	151836781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	31	341	0	ENST00000262189.6:c.14439dup	p.Glu4814ArgfsTer5	p.E4814Rfs*5	ENST00000262189	NM_170606.2	4813	-/A																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0045642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	35	285	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424075	49424075	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	168	696	0	ENST00000301067.7:c.13987del	p.Arg4663GlyfsTer3	p.R4663Gfs*3	ENST00000301067	NM_003482.3	4663	Agg/gg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527913	157527913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	114	484	0	ENST00000346085.5:c.5638G>A	p.Val1880Ile	p.V1880I	ENST00000346085	NM_020732.3	1880	Gtc/Atc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0045644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	242	397	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10248621	10248621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	45	838	0	ENST00000340748.4:c.4132C>T	p.Arg1378Trp	p.R1378W	ENST00000340748		1378	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519997		P-0045644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	350	862	0	ENST00000269305.4:c.332T>C	p.Leu111Pro	p.L111P	ENST00000269305	NM_001126112.2	111	cTg/cCg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138137	64138137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	321	842	0	ENST00000334205.4:c.2060C>T	p.Thr687Met	p.T687M	ENST00000334205	NM_003942.2	687	aCg/aTg																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8075446	8075446	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0045644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	54	305	0	ENST00000377482.5:c.126-2A>G		p.X42_splice	ENST00000377482	NM_018948.3	42																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31515270	31515270	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	116	690	0	ENST00000344624.3:c.1115G>A	p.Trp372Ter	p.W372*	ENST00000344624		372	tGg/tAg																																																																															
NDUFB11	54539	MSKCC	GRCh37	X	47004897	47004897	+	5_prime_UTR_variant	5'UTR	SNP	G	G	A			P-0045644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	293	739	0	ENST00000377811.3:c.-819C>T		p.*273*	ENST00000377811	NM_001135998.2																																																																																	
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0045645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	75	246	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821643	72821645	+	inframe_deletion	In_Frame_Del	DEL	CCG	CCG	-			P-0045645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	10	69	0	ENST00000268489.5:c.10530_10532del	p.Gly3512del	p.G3512del	ENST00000268489	NM_006885.3	3510	ggCGGt/ggt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279579	18279579	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1403656005		P-0045645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	43	428	0	ENST00000222254.8:c.1852G>A	p.Glu618Lys	p.E618K	ENST00000222254	NM_005027.3	618	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0045670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	493	553	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0045670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	75	626	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0045774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	33	251	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366685	40366692	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGGGTT	GCCGGGTT	-			P-0045774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	49	406	0	ENST00000397332.2:c.505_512del	p.Asn169AlafsTer27	p.N169Afs*27	ENST00000397332	NM_001033082.2	169	AACCCGGCg/g																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575526	64575526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	465	910	0	ENST00000337652.1:c.506C>T	p.Ala169Val	p.A169V	ENST00000337652	NM_130803.2	169	gCc/gTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692994	89693017	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCAGAGACAAAAAGGTAAGTTAT	ACCAGAGACAAAAAGGTAAGTTAT	-			P-0045817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	109	482	0	ENST00000371953.3:c.478_492+9del		p.X160_splice	ENST00000371953	NM_000314.4	160																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	73	397	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63526104	63526104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	196	672	1	ENST00000307078.5:c.2522G>A	p.Arg841Gln	p.R841Q	ENST00000307078	NM_004655.3	841	cGg/cAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	367	891	9	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	165	984	5	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143114322	143114322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	105	429	0	ENST00000262992.4:c.1099G>A	p.Gly367Arg	p.G367R	ENST00000262992	NM_001101669.1	367	Gga/Aga																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	230	959	5	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715979	52715979	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786205227		P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	22	794	1	ENST00000322088.6:c.544C>T	p.Arg182Trp	p.R182W	ENST00000322088	NM_014225.5	182	Cgg/Tgg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100420	8100420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	82	1008	0	ENST00000346208.3:c.394G>A	p.Val132Ile	p.V132I	ENST00000346208		132	Gtc/Atc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933593	39933594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	153	812	0	ENST00000378444.4:c.1005dup	p.Ser336LeufsTer45	p.S336Lfs*45	ENST00000378444	NM_001123385.1	335	-/C																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532654	63532654	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	200	786	4	ENST00000307078.5:c.1925del	p.Lys642ArgfsTer47	p.K642Rfs*47	ENST00000307078	NM_004655.3	642	aAg/ag																																																																															
CBL	867	MSKCC	GRCh37	11	119142446	119142446	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	82	354	0	ENST00000264033.4:c.445C>T	p.Arg149Ter	p.R149*	ENST00000264033	NM_005188.3	149	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735467	40735467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	165	768	0	ENST00000373198.4:c.3406C>T	p.Arg1136Cys	p.R1136C	ENST00000373198	NM_133170.3	1136	Cgt/Tgt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509082	106509082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144565710		P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	176	710	2	ENST00000359195.3:c.1076G>A	p.Arg359His	p.R359H	ENST00000359195	NM_002649.2	359	cGc/cAc																																																																															
TP63	8626	MSKCC	GRCh37	3	189526170	189526170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	218	708	2	ENST00000264731.3:c.434C>T	p.Ala145Val	p.A145V	ENST00000264731	NM_003722.4	145	gCg/gTg																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	138	563	2	ENST00000262741.5:c.883delA	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871060	12871070	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGTGCCTGC	AAGGTGCCTGC	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	88	405	0	ENST00000228872.4:c.295_305delTGCAAGGTGCC	p.Cys99GlyfsTer22	p.C99Gfs*22	ENST00000228872	NM_004064.3	96	aAAGGTGCCTGC/a																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	145	571	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424178	49424178	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	27	420	3	ENST00000301067.7:c.13884delC	p.Thr4629ProfsTer11	p.T4629Pfs*11	ENST00000301067	NM_003482.3	4628	ccC/cc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344955	118344955	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	21	257	1	ENST00000534358.1:c.3086delA	p.Lys1029ArgfsTer65	p.K1029Rfs*65	ENST00000534358	NM_005933.3	1027	ctA/ct																																																																															
BARD1	580	MSKCC	GRCh37	2	215610468	215610468	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	101	362	0	ENST00000260947.4:c.1788delA	p.Lys596AsnfsTer9	p.K596Nfs*9	ENST00000260947	NM_000465.2	596	aaA/aa																																																																															
RARA	5914	MSKCC	GRCh37	17	38511598	38511598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	198	825	0	ENST00000254066.5:c.1096C>T	p.Arg366Trp	p.R366W	ENST00000254066	NM_000964.3	366	Cgg/Tgg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69012017	69012017	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	117	621	0	ENST00000288368.4:c.2654T>C	p.Phe885Ser	p.F885S	ENST00000288368	NM_024870.2	885	tTc/tCc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129350	64129350	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	99	847	1	ENST00000334205.4:c.782T>C	p.Phe261Ser	p.F261S	ENST00000334205	NM_003942.2	261	tTc/tCc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164839	36164839	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	246	1073	1	ENST00000300305.3:c.1036del	p.Arg346AlafsTer248	p.R346Afs*248	ENST00000300305		346	Cgc/gc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748089	41748089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	10	89	0	ENST00000226382.2:c.680C>T	p.Ala227Val	p.A227V	ENST00000226382	NM_003924.3	227	gCg/gTg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001241	150001241	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	99	524	1	ENST00000253339.5:c.2363del	p.Gly788ValfsTer3	p.G788Vfs*3	ENST00000253339		788	gGt/gt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505431	25505431	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	147	803	0	ENST00000264709.3:c.327delG	p.Gln110ArgfsTer52	p.Q110Rfs*52	ENST00000264709	NM_175629.2	109	ggG/gg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106805	27106805	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	183	792	1	ENST00000324856.7:c.6416C>A	p.Pro2139His	p.P2139H	ENST00000324856	NM_006015.4	2139	cCc/cAc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533094	63533094	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	164	859	2	ENST00000307078.5:c.1800del	p.Gly601AlafsTer88	p.G601Afs*88	ENST00000307078	NM_004655.3	600	ccC/cc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115269643	115269643	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	58	671	0	ENST00000438362.2:c.1563G>T	p.Lys521Asn	p.K521N	ENST00000438362	NM_001242891.1	521	aaG/aaT																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724540	112724540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	132	586	0	ENST00000369452.4:c.424G>A	p.Val142Met	p.V142M	ENST00000369452	NM_007373.3	142	Gtg/Atg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741651	17741651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	158	615	0	ENST00000250003.3:c.322G>A	p.Ala108Thr	p.A108T	ENST00000250003	NM_002478.4	108	Gcc/Acc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127694	64127694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	212	995	2	ENST00000334205.4:c.187G>A	p.Ala63Thr	p.A63T	ENST00000334205	NM_003942.2	63	Gcc/Acc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118354983	118354983	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	140	488	0	ENST00000534358.1:c.4177del	p.Ile1393PhefsTer28	p.I1393Ffs*28	ENST00000534358	NM_005933.3	1391	cAa/ca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434747	49434747	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	181	1022	0	ENST00000301067.7:c.6806C>A	p.Ser2269Tyr	p.S2269Y	ENST00000301067	NM_003482.3	2269	tCc/tAc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57857554	57857554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	120	644	0	ENST00000228682.2:c.84del	p.Ser29ValfsTer49	p.S29Vfs*49	ENST00000228682	NM_005269.2	27	gCc/gc																																																																															
POLE	5426	MSKCC	GRCh37	12	133257788	133257788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	162	672	0	ENST00000320574.5:c.140G>A	p.Arg47Gln	p.R47Q	ENST00000320574	NM_006231.2	47	cGg/cAg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73352456	73352456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	134	525	1	ENST00000377767.4:c.449G>A	p.Arg150Gln	p.R150Q	ENST00000377767	NM_014953.3	150	cGa/cAa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434549	110434549	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	175	866	0	ENST00000375856.3:c.3852G>T	p.Trp1284Cys	p.W1284C	ENST00000375856	NM_003749.2	1284	tgG/tgT																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782289	56782289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	147	631	2	ENST00000308159.5:c.130C>T	p.Arg44Cys	p.R44C	ENST00000308159	NM_014669.4	44	Cgt/Tgt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644830	67644830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	143	545	1	ENST00000264010.4:c.95G>A	p.Gly32Asp	p.G32D	ENST00000264010	NM_006565.3	32	gGc/gAc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968214	15968214	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	69	278	0	ENST00000268712.3:c.5071A>G	p.Arg1691Gly	p.R1691G	ENST00000268712	NM_006311.3	1691	Agg/Ggg																																																																															
CD79B	974	MSKCC	GRCh37	17	62007581	62007581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	139	823	1	ENST00000392795.3:c.286C>T	p.Arg96Cys	p.R96C	ENST00000392795	NM_001039933.1	96	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231450	5231450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	245	852	1	ENST00000357368.4:c.2026C>T	p.Pro676Ser	p.P676S	ENST00000357368	NM_002850.3	676	Ccg/Tcg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610502	10610502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	93	881	0	ENST00000171111.5:c.208C>A	p.Leu70Met	p.L70M	ENST00000171111	NM_203500.1	70	Ctg/Atg																																																																															
CASP8	841	MSKCC	GRCh37	2	202141624	202141624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	128	423	0	ENST00000358485.4:c.915del	p.Ala306HisfsTer24	p.A306Hfs*24	ENST00000358485	NM_001080125.1	304	gcA/gc																																																																															
EP300	2033	MSKCC	GRCh37	22	41548004	41548004	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	68	681	0	ENST00000263253.7:c.2985G>T	p.Glu995Asp	p.E995D	ENST00000263253	NM_001429.3	995	gaG/gaT																																																																															
EP300	2033	MSKCC	GRCh37	22	41572825	41572825	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	66	785	2	ENST00000263253.7:c.5113del	p.Met1705TrpfsTer4	p.M1705Wfs*4	ENST00000263253	NM_001429.3	1704	Aaa/aa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480324	89480325	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	78	306	0	ENST00000336596.2:c.2163dup	p.Gln722SerfsTer36	p.Q722Sfs*36	ENST00000336596	NM_005233.5	721	att/aTtt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31464411	31464411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	175	767	1	ENST00000344624.3:c.2506C>T	p.Arg836Ter	p.R836*	ENST00000344624		836	Cga/Tga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176696683	176696683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	101	394	0	ENST00000439151.2:c.5384C>T	p.Pro1795Leu	p.P1795L	ENST00000439151	NM_022455.4	1795	cCa/cTa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057308	180057308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	108	885	0	ENST00000261937.6:c.430G>T	p.Asp144Tyr	p.D144Y	ENST00000261937	NM_182925.4	144	Gac/Tac																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120774	94120774	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	128	534	0	ENST00000369303.4:c.277G>T	p.Gly93Cys	p.G93C	ENST00000369303	NM_004440.3	93	Ggc/Tgc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94124454	94124457	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	68	455	0	ENST00000369303.4:c.126_129del	p.Thr43SerfsTer57	p.T43Sfs*57	ENST00000369303	NM_004440.3	42	caAACA/ca																																																																															
SESN1	27244	MSKCC	GRCh37	6	109308826	109308826	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	53	225	0	ENST00000436639.2:c.1577T>A	p.Val526Asp	p.V526D	ENST00000436639	NM_014454.2	526	gTt/gAt																																																																															
RAC1	5879	MSKCC	GRCh37	7	6442031	6442031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	40	112	1	ENST00000356142.4:c.590G>A	p.Cys197Tyr	p.C197Y	ENST00000356142	NM_018890.3	197	tGc/tAc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367259	50367259	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	109	460	0	ENST00000331340.3:c.66T>A	p.Asp22Glu	p.D22E	ENST00000331340	NM_006060.4	22	gaT/gaA																																																																															
TEK	7010	MSKCC	GRCh37	9	27109591	27109591	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	166	635	0	ENST00000380036.4:c.3G>T	p.Met1?	p.M1?	ENST00000380036	NM_000459.3	1	atG/atT																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781484	135781484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	121	499	0	ENST00000298552.3:c.1481C>T	p.Ala494Val	p.A494V	ENST00000298552	NM_001162426.1	494	gCa/gTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0045826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	42	426	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155721	56155722	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0045826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	44	339	0	ENST00000399503.3:c.816_817del	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	271	agAAaa/agaa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231772	36231773	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	C			P-0045826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	45	676	0	ENST00000300305.3:c.611dup	p.Arg205LysfsTer8	p.R205Kfs*8	ENST00000300305		204	cga/cgGa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161318	55161318	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	32	433	0	ENST00000257290.5:c.3149T>A	p.Ile1050Asn	p.I1050N	ENST00000257290	NM_006206.4	1050	aTt/aAt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184052	56184052	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0045826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	36	266	0	ENST00000399503.3:c.4258-1G>A		p.X1420_splice	ENST00000399503	NM_005921.1	1420																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151945319	151945320	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0045826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	10	113	0	ENST00000262189.6:c.2198_2199dup	p.Thr734LeufsTer4	p.T734Lfs*4	ENST00000262189	NM_170606.2	733	-/CT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578212	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	A			P-0045827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	12	811	1	ENST00000269305.4:c.637_638delinsT	p.Arg213TyrfsTer34	p.R213Yfs*34	ENST00000269305	NM_001126112.2	213	CGa/Ta																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259439	55259439	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs397517126		P-0045829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	195	465	0	ENST00000275493.2:c.2497T>G	p.Leu833Val	p.L833V	ENST00000275493	NM_005228.3	833	Ttg/Gtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	222	647	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																															
BARD1	580	MSKCC	GRCh37	2	215632303	215632303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	169	451	0	ENST00000260947.4:c.1471G>T	p.Gly491Trp	p.G491W	ENST00000260947	NM_000465.2	491	Ggg/Tgg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69069607	69069607	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	28	381	0	ENST00000288368.4:c.4282G>T	p.Glu1428Ter	p.E1428*	ENST00000288368	NM_024870.2	1428	Gaa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0045873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	165	526	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241678	55241678	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs397517085		P-0045873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	182	552	0	ENST00000275493.2:c.2126A>C	p.Glu709Ala	p.E709A	ENST00000275493	NM_005228.3	709	gAa/gCa																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856422	111856422	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	53	294	3	ENST00000341259.2:c.473A>C	p.His158Pro	p.H158P	ENST00000341259	NM_005475.2	158	cAc/cCc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52613209	52613209	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	127	447	1	ENST00000394830.3:c.3319G>T	p.Glu1107Ter	p.E1107*	ENST00000394830	NM_018313.4	1107	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0045875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	122	473	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
CSDE1	7812	MSKCC	GRCh37	1	115261337	115261337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	44	364	0	ENST00000438362.2:c.2384G>A	p.Arg795Gln	p.R795Q	ENST00000438362	NM_001242891.1	795	cGa/cAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29556321	29556322	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0045875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	169	431	0	ENST00000358273.4:c.2688_2689del	p.Asp896GlufsTer9	p.D896Efs*9	ENST00000358273	NM_001042492.2	896	gaTCgg/gagg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0045879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	11	420	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098804	178098804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	247	536	1	ENST00000397062.3:c.241G>A	p.Gly81Ser	p.G81S	ENST00000397062	NM_006164.4	81	Ggt/Agt																																																																															
BRAF	673	MSKCC	GRCh37	7	140477854	140477854	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	159	457	0	ENST00000288602.6:c.1454T>G	p.Leu485Trp	p.L485W	ENST00000288602	NM_004333.4	485	tTg/tGg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115831	8115831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	191	650	0	ENST00000346208.3:c.1177C>A	p.Pro393Thr	p.P393T	ENST00000346208		393	Ccg/Acg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221908	1221947	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTGTGCCCAGCTGACAGGCTCCTCGCCGGCTTCTCCTCAG	CTGTGCCCAGCTGACAGGCTCCTCGCCGGCTTCTCCTCAG	-			P-0045880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	212	621	0	ENST00000326873.7:c.863-40_863-1del		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																																
E2F3	1871	MSKCC	GRCh37	6	20480084	20480084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	127	310	0	ENST00000346618.3:c.401G>A	p.Arg134Gln	p.R134Q	ENST00000346618	NM_001949.4	134	cGa/cAa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619161	37619162	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	212	564	0	ENST00000447079.4:c.839dup	p.Glu281GlyfsTer17	p.E281Gfs*17	ENST00000447079	NM_015083.1	279	-/A																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627610	37627610	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0045881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	183	491	0	ENST00000447079.4:c.1525A>T	p.Lys509Ter	p.K509*	ENST00000447079	NM_015083.1	509	Aaa/Taa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412708	63412708	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	240	283	0	ENST00000330258.3:c.459A>T	p.Lys153Asn	p.K153N	ENST00000330258	NM_152424.3	153	aaA/aaT																																																																															
STAG2	10735	MSKCC	GRCh37	X	123202482	123202482	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	11	170	0	ENST00000218089.9:c.2334C>G	p.Asn778Lys	p.N778K	ENST00000218089	NM_001042749.1	778	aaC/aaG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0045262-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			293	18	206	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0045615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	112	583	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	71	286	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048764	180048764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	68	723	1	ENST00000261937.6:c.1798G>A	p.Asp600Asn	p.D600N	ENST00000261937	NM_182925.4	600	Gat/Aat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034441	47034441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	45	552	1	ENST00000329236.7:c.295G>A	p.Val99Ile	p.V99I	ENST00000329236	NM_001204466.1	99	Gtc/Atc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031919	10031919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	52	439	1	ENST00000330684.3:c.904G>A	p.Ala302Thr	p.A302T	ENST00000330684	NM_001134407.1	302	Gct/Act																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575128	48575128	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	25	257	0	ENST00000342988.3:c.322G>T	p.Glu108Ter	p.E108*	ENST00000342988	NM_005359.5	108	Gaa/Taa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542923	187542923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	31	203	0	ENST00000441802.2:c.4817T>C	p.Ile1606Thr	p.I1606T	ENST00000441802	NM_005245.3	1606	aTt/aCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	41	478	0	ENST00000269305.4:c.725G>C	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	tGc/tCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0045616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	54	396	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123353298	123353298	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	52	561	0	ENST00000358487.5:c.34G>T	p.Val12Leu	p.V12L	ENST00000358487	NM_000141.4	12	Gtg/Ttg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138375072	138375072	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	23	352	0	ENST00000289153.2:c.2987A>C	p.His996Pro	p.H996P	ENST00000289153	NM_006219.2	996	cAt/cCt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143324119	143324119	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	14	189	0	ENST00000262992.4:c.344A>G	p.Tyr115Cys	p.Y115C	ENST00000262992	NM_001101669.1	115	tAt/tGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0045617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	161	264	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
ALK	238	MSKCC	GRCh37	2	29456533	29456538	+	inframe_deletion	In_Frame_Del	DEL	AATGCA	AATGCA	-			P-0045617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	89	382	0	ENST00000389048.3:c.2380_2385del	p.Cys794_Ile795del	p.C794_I795del	ENST00000389048	NM_004304.4	794	TGCATT/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	43	263	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0045618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	31	420	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0045619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	115	377	1	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0045619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	94	329	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	185	811	1	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562443	95562443	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	82	434	0	ENST00000343455.3:c.4814C>G	p.Pro1605Arg	p.P1605R	ENST00000343455	NM_177438.2	1605	cCt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	131	327	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120403	70120404	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1151	135	798	0	ENST00000245479.2:c.1406dup	p.Met469IlefsTer109	p.M469Ifs*109	ENST00000245479	NM_000346.3	469	atg/aTtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0045620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	94	608	0	ENST00000269305.4:c.993+2T>C		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
BBC3	27113	MSKCC	GRCh37	19	47735820	47736220	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	GGCATGGACATGCCTGGGCAGACCCCATGCCAAATTTCATCCTGTCTCATAGCTTTCCATTCCGTTTCTTTTTCAGTTTCTCATTGTTACTTCCTGCCCTGCTCTGGTTTGGTGAGTTTTGTCCTTCCTTTTTCCAAAGCCGTGGATTCCTGTCTCCTCTACACTTTCCATCCTTACTGGGTCTCACCCAATCGCAATCGCCTCACCAGAGTGACTCACCTTCCAGTGCCTAGTGTGGGGCTGGCTGAGTAAGGATGTCAGACTTCTCAAACTTGACTGCCTCCAAGTACACACTCTTAGCTCCCCCAAGAGATGCAGGTAATCTATATCTCACGTGAAATCTCCCCATTTGCAACATTGGGAACTCCTCAGCTTTCCTCCCTCTTTCACTTTCCCTCCTC	GGCATGGACATGCCTGGGCAGACCCCATGCCAAATTTCATCCTGTCTCATAGCTTTCCATTCCGTTTCTTTTTCAGTTTCTCATTGTTACTTCCTGCCCTGCTCTGGTTTGGTGAGTTTTGTCCTTCCTTTTTCCAAAGCCGTGGATTCCTGTCTCCTCTACACTTTCCATCCTTACTGGGTCTCACCCAATCGCAATCGCCTCACCAGAGTGACTCACCTTCCAGTGCCTAGTGTGGGGCTGGCTGAGTAAGGATGTCAGACTTCTCAAACTTGACTGCCTCCAAGTACACACTCTTAGCTCCCCCAAGAGATGCAGGTAATCTATATCTCACGTGAAATCTCCCCATTTGCAACATTGGGAACTCCTCAGCTTTCCTCCCTCTTTCACTTTCCCTCCTC	-			P-0045620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	725	82	0				ENST00000449228	NM_001127240.2			4-Jan																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974759	21974759	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	67	255	0	ENST00000304494.5:c.68del	p.Gly23ValfsTer3	p.G23Vfs*3	ENST00000304494	NM_000077.4	23	gGt/gt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	169	333	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	244	548	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	86	699	1	ENST00000171111.5:c.959G>A	p.Arg320Gln	p.R320Q	ENST00000171111	NM_203500.1	320	cGg/cAg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934713	49934713	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	278	570	0	ENST00000296474.3:c.2183G>T	p.Arg728Leu	p.R728L	ENST00000296474	NM_002447.2	728	cGg/cTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923710	39923710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	183	662	0	ENST00000378444.4:c.3381C>A	p.Ser1127Arg	p.S1127R	ENST00000378444	NM_001123385.1	1127	agC/agA																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15965567	15965567	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	51	184	0	ENST00000268712.3:c.5239C>G	p.Arg1747Gly	p.R1747G	ENST00000268712	NM_006311.3	1747	Cga/Gga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910843	114910843	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	127	416	0	ENST00000543371.1:c.962A>G	p.Gln321Arg	p.Q321R	ENST00000543371	NM_001198531.1	321	cAg/cGg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870848	12870854	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCTCG	GCCCTCG	-			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	26	228	0	ENST00000228872.4:c.78_84del	p.Ser27AlafsTer13	p.S27Afs*13	ENST00000228872	NM_004064.3	25	aaGCCCTCG/aa																																																																															
MDM2	4193	MSKCC	GRCh37	12	69230515	69230515	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	57	269	0	ENST00000462284.1:c.904G>C	p.Glu302Gln	p.E302Q	ENST00000462284	NM_002392.5	302	Gaa/Caa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687519	37687519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	48	316	0	ENST00000447079.4:c.4423C>T	p.Pro1475Ser	p.P1475S	ENST00000447079	NM_015083.1	1475	Cct/Tct																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805384	46805384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	175	765	0	ENST00000290295.7:c.572C>T	p.Pro191Leu	p.P191L	ENST00000290295	NM_006361.5	191	cCa/cTa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610590	10610605	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCTTGCACTCAGTG	CGCCTTGCACTCAGTG	-			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	61	736	0	ENST00000171111.5:c.105_120del	p.Thr36ArgfsTer2	p.T36Rfs*2	ENST00000171111	NM_203500.1	35	tcCACTGAGTGCAAGGCG/tc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38314960	38314960	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	174	652	1	ENST00000425967.3:c.104G>A	p.Trp35Ter	p.W35*	ENST00000425967	NM_001174067.1	35	tGg/tAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528761	8528761	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	104	329	0	ENST00000356435.5:c.371G>C	p.Gly124Ala	p.G124A	ENST00000356435		124	gGc/gCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0045624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	34	266	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0045624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	24	183	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
LMO1	4004	MSKCC	GRCh37	11	8251991	8251991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	96	672	1	ENST00000335790.3:c.86G>A	p.Arg29His	p.R29H	ENST00000335790	NM_002315.2	29	cGc/cAc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851396	63851396	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	66	423	0	ENST00000279873.7:c.2174G>T	p.Arg725Met	p.R725M	ENST00000279873	NM_032199.2	725	aGg/aTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120833	115120833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	114	309	0	ENST00000257566.3:c.173G>A	p.Gly58Asp	p.G58D	ENST00000257566	NM_016569.3	58	gGc/gAc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207120	1207120	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	354	718	1	ENST00000326873.7:c.208G>T	p.Glu70Ter	p.E70*	ENST00000326873	NM_000455.4	70	Gag/Tag																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729613	41729613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	109	508	0	ENST00000242208.4:c.916C>T	p.Arg306Cys	p.R306C	ENST00000242208	NM_002192.2	306	Cgc/Tgc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0045665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	129	369	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56177093	56177093	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	144	187	0	ENST00000399503.3:c.2365del	p.Ile789SerfsTer10	p.I789Sfs*10	ENST00000399503	NM_005921.1	788	gAa/ga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180633	56180635	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0045665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	267	271	0	ENST00000399503.3:c.3964_3966del	p.Phe1322del	p.F1322del	ENST00000399503	NM_005921.1	1321	cTCTtc/ctc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085968	16085968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	117	544	1	ENST00000281043.3:c.1144C>T	p.Arg382Cys	p.R382C	ENST00000281043	NM_005378.4	382	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	17	286	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266709	198266709	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0045674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	33	350	0	ENST00000335508.6:c.2223G>T	p.Lys741Asn	p.K741N	ENST00000335508	NM_012433.2	741	aaG/aaT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600446	10600446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	236	694	0	ENST00000171111.5:c.1409G>A	p.Arg470His	p.R470H	ENST00000171111	NM_203500.1	470	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112173815	112173815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	50	275	0	ENST00000257430.4:c.2524G>A	p.Asp842Asn	p.D842N	ENST00000257430	NM_000038.5	842	Gat/Aat																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0045723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	41	429	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0045723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	36	423	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0045723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	41	434	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715721	30715721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	32	259	1	ENST00000359013.4:c.1454G>T	p.Arg485Leu	p.R485L	ENST00000359013	NM_001024847.2	485	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	579	465	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1400	39	294	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	79	215	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046357	69046357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	59	379	0	ENST00000288368.4:c.3830C>T	p.Ala1277Val	p.A1277V	ENST00000288368	NM_024870.2	1277	gCc/gTc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39916505	39916505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	360	653	1	ENST00000378444.4:c.4498G>A	p.Ala1500Thr	p.A1500T	ENST00000378444	NM_001123385.1	1500	Gcc/Acc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193202184	193202184	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	89	264	0	ENST00000367435.3:c.1216C>T	p.Gln406Ter	p.Q406*	ENST00000367435	NM_024529.4	406	Caa/Taa																																																																															
WT1	7490	MSKCC	GRCh37	11	32450134	32450145	+	inframe_deletion	In_Frame_Del	DEL	GGGCGTCCCGTC	GGGCGTCCCGTC	-			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	72	585	0	ENST00000332351.3:c.667_678del	p.Asp223_Pro226del	p.D223_P226del	ENST00000332351	NM_024426.4	223	GACGGGACGCCC/-																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443985	49443985	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	309	641	0	ENST00000301067.7:c.3386A>T	p.Asp1129Val	p.D1129V	ENST00000301067	NM_003482.3	1129	gAt/gTt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913540	32913540	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	182	307	0	ENST00000380152.3:c.5048A>T	p.Gln1683Leu	p.Q1683L	ENST00000380152		1683	cAg/cTg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647038	23647038	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	358	547	0	ENST00000261584.4:c.829G>T	p.Asp277Tyr	p.D277Y	ENST00000261584	NM_024675.3	277	Gac/Tac																																																																															
NF1	4763	MSKCC	GRCh37	17	29676220	29676220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	278	259	0	ENST00000358273.4:c.7274del	p.Asn2425IlefsTer7	p.N2425Ifs*7	ENST00000358273	NM_001042492.2	2424	agA/ag																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761171	59761171	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	96	437	1	ENST00000259008.2:c.3236T>G	p.Ile1079Ser	p.I1079S	ENST00000259008	NM_032043.2	1079	aTt/aGt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021662	31021662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	229	388	0	ENST00000375687.4:c.1661G>T	p.Ser554Ile	p.S554I	ENST00000375687	NM_015338.5	554	aGt/aTt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480475	89480475	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	126	214	0	ENST00000336596.2:c.2312T>C	p.Leu771Pro	p.L771P	ENST00000336596	NM_005233.5	771	cTg/cCg																																																																															
TERT	7015	MSKCC	GRCh37	5	1293677	1293677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2466	464	862	0	ENST00000310581.5:c.1324G>A	p.Asp442Asn	p.D442N	ENST00000310581	NM_198253.2	442	Gac/Aac																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528525	157528525	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	144	460	0	ENST00000346085.5:c.6250G>C	p.Glu2084Gln	p.E2084Q	ENST00000346085	NM_020732.3	2084	Gag/Cag																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22008835	22008835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	252	530	2	ENST00000276925.6:c.118C>A	p.Pro40Thr	p.P40T	ENST00000276925	NM_004936.3	40	Ccc/Acc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44950061	44950061	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	62	339	0	ENST00000377967.4:c.3830T>C	p.Met1277Thr	p.M1277T	ENST00000377967	NM_021140.2	1277	aTg/aCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	32	301	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519816		P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	100	564	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411411	63411411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	102	703	1	ENST00000330258.3:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000330258	NM_152424.3	586	Cga/Tga																																																																															
BCL10	8915	MSKCC	GRCh37	1	85736510	85736511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs387906351		P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	21	197	2	ENST00000370580.1:c.136dup	p.Ile46AsnfsTer4	p.I46Nfs*4	ENST00000370580	NM_003921.4	46	ata/aAta																																																																															
APC	324	MSKCC	GRCh37	5	112175754	112175754	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	26	230	0	ENST00000257430.4:c.4463T>A	p.Leu1488Ter	p.L1488*	ENST00000257430	NM_000038.5	1488	tTa/tAa																																																																															
TERT	7015	MSKCC	GRCh37	5	1293760	1293760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	79	1024	0	ENST00000310581.5:c.1241C>T	p.Pro414Leu	p.P414L	ENST00000310581	NM_198253.2	414	cCg/cTg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26970440	26970441	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	12	34	0	ENST00000381527.3:c.815dup	p.Met273AspfsTer3	p.M273Dfs*3	ENST00000381527	NM_001260.1	270	ata/atAa																																																																															
APC	324	MSKCC	GRCh37	5	112174979	112174979	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	17	170	0	ENST00000257430.4:c.3688C>T	p.Gln1230Ter	p.Q1230*	ENST00000257430	NM_000038.5	1230	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579702	7579703	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	66	489	0	ENST00000269305.4:c.93dup	p.Leu32SerfsTer11	p.L32Sfs*11	ENST00000269305	NM_001126112.2	31	-/T																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662055	227662055	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	33	599	0	ENST00000305123.5:c.1400G>T	p.Cys467Phe	p.C467F	ENST00000305123	NM_005544.2	467	tGc/tTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356317	66356317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	19	309	0	ENST00000273854.3:c.1180G>T	p.Ala394Ser	p.A394S	ENST00000273854	NM_004439.5	394	Gca/Tca																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178304	56178304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	22	212	0	ENST00000399503.3:c.3277G>A	p.Asp1093Asn	p.D1093N	ENST00000399503	NM_005921.1	1093	Gac/Aac																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554377	141554377	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	82	807	0	ENST00000220592.5:c.1774A>G	p.Ile592Val	p.I592V	ENST00000220592	NM_012154.3	592	Atc/Gtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	12	305	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0045732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	22	678	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591976	48591976	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0045732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	11	196	0	ENST00000342988.3:c.1139G>C	p.Arg380Thr	p.R380T	ENST00000342988	NM_005359.5	380	aGg/aCg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200108	67200108	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	104	525	0	ENST00000312629.5:c.495C>G	p.Ile165Met	p.I165M	ENST00000312629	NM_003952.2	165	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912664		P-0045737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	124	590	1	ENST00000269305.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000269305	NM_001126112.2	337	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591890	48591905	+	frameshift_variant	Frame_Shift_Del	DEL	TGGATACGTGGACCCT	TGGATACGTGGACCCT	-			P-0045737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	68	349	0	ENST00000342988.3:c.1054_1069del	p.Gly352LeufsTer27	p.G352Lfs*27	ENST00000342988	NM_005359.5	351	gaTGGATACGTGGACCCT/ga																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030774	48030774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	47	257	0	ENST00000234420.5:c.3388G>A	p.Val1130Met	p.V1130M	ENST00000234420	NM_000179.2	1130	Gtg/Atg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441217	52441217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	58	340	0	ENST00000460680.1:c.553G>A	p.Gly185Arg	p.G185R	ENST00000460680	NM_004656.3	185	Ggg/Agg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0045737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	195	453	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460549	8460549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	80	311	0	ENST00000356435.5:c.3737A>G	p.Tyr1246Cys	p.Y1246C	ENST00000356435		1246	tAc/tGc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039881	47039881	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	267	334	0	ENST00000329236.7:c.990del	p.Ala331ArgfsTer76	p.A331Rfs*76	ENST00000329236	NM_001204466.1	330	gcT/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	22	224	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0045739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	70	539	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50492536	50492537	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGCT			P-0045739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	69	523	0	ENST00000394963.4:c.1436_1440dup	p.Phe481LeufsTer28	p.F481Lfs*28	ENST00000394963	NM_003076.4	478	cga/cGAGCTga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880987	37880988	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTGATGGCTGCT			P-0045740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	132	510	0	ENST00000269571.5:c.2326_2327insCTGTGATGGCTG	p.Ala775_Gly776insAlaValMetAla	p.A775_G776insAVMA	ENST00000269571		772	-/GTGATGGCTGCT																																																																															
TERT	7015	MSKCC	GRCh37	5	1295260	1295260	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0045740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	144	245	0				ENST00000310581	NM_198253.2																																																																																	
BCL2L11	10018	MSKCC	GRCh37	2	111881594	111881594	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	80	217	0	ENST00000393256.3:c.272G>T	p.Arg91Leu	p.R91L	ENST00000393256	NM_006538.4	91	cGa/cTa																																																																															
MSI1	4440	MSKCC	GRCh37	12	120794704	120794718	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CCCAGCATGCCGATG	CCCAGCATGCCGATG	-			P-0045566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	59	189	0	ENST00000257552.2:c.639_652+1del		p.X213_splice	ENST00000257552	NM_002442.3	213																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0045571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	49	290	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921566	178921566	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793349		P-0045571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	36	276	0	ENST00000263967.3:c.1048G>A	p.Asp350Asn	p.D350N	ENST00000263967	NM_006218.2	350	Gac/Aac																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56152571	56152572	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	41	233	0	ENST00000399503.3:c.629dup	p.Val211CysfsTer9	p.V211Cfs*9	ENST00000399503	NM_005921.1	209	-/C																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591966	48591966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	96	310	0	ENST00000342988.3:c.1129G>A	p.Glu377Lys	p.E377K	ENST00000342988	NM_005359.5	377	Gag/Aag																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195658	102195658	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	115	338	0	ENST00000263464.3:c.418A>T	p.Asn140Tyr	p.N140Y	ENST00000263464	NM_001165.4	140	Aac/Tac																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178068	56178069	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	186	323	0	ENST00000399503.3:c.3042dup	p.Pro1015ThrfsTer21	p.P1015Tfs*21	ENST00000399503	NM_005921.1	1014	ata/atAa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	27	182	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	72	333	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366808	40366808	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	31	328	2	ENST00000397332.2:c.389C>A	p.Ser130Ter	p.S130*	ENST00000397332	NM_001033082.2	130	tCg/tAg																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588896	69588896	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	66	369	0	ENST00000168712.1:c.341-1G>T		p.X114_splice	ENST00000168712	NM_002007.2	114																																																																																
FLT3	2322	MSKCC	GRCh37	13	28592649	28592649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	64	333	0	ENST00000241453.7:c.2496G>T	p.Leu832Phe	p.L832F	ENST00000241453	NM_004119.2	832	ttG/ttT																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107971	30107971	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	90	379	0	ENST00000331968.5:c.836C>A	p.Thr279Asn	p.T279N	ENST00000331968	NM_002742.2	279	aCc/aAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221227	5221227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	167	467	0	ENST00000357368.4:c.3239G>T	p.Arg1080Leu	p.R1080L	ENST00000357368	NM_002850.3	1080	cGt/cTt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905045	50905045	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	34	320	0	ENST00000440232.2:c.327G>T	p.Gln109His	p.Q109H	ENST00000440232	NM_002691.3	109	caG/caT																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560843	9560843	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	31	331	0	ENST00000353224.5:c.939C>A	p.Tyr313Ter	p.Y313*	ENST00000353224	NM_177990.2	313	taC/taA																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928631	49928631	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	59	458	0	ENST00000296474.3:c.3643A>G	p.Met1215Val	p.M1215V	ENST00000296474	NM_002447.2	1215	Atg/Gtg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176673726	176673726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	23	275	0	ENST00000439151.2:c.4426C>T	p.His1476Tyr	p.H1476Y	ENST00000439151	NM_022455.4	1476	Cat/Tat																																																																															
ROS1	6098	MSKCC	GRCh37	6	117622151	117622151	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	39	211	0	ENST00000368508.3:c.6719A>T	p.Asn2240Ile	p.N2240I	ENST00000368508	NM_002944.2	2240	aAt/aTt																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935564	13935564	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	37	296	0	ENST00000405192.2:c.1292A>G	p.Asp431Gly	p.D431G	ENST00000405192	NM_001163147.1	431	gAt/gGt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508604	106508604	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	56	271	0	ENST00000359195.3:c.598C>A	p.Pro200Thr	p.P200T	ENST00000359195	NM_002649.2	200	Ccg/Acg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47004876	47004876	+	5_prime_UTR_variant	5'UTR	SNP	G	G	C			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	107	470	0	ENST00000329236.7:c.-134G>C		p.*45*	ENST00000329236	NM_001204466.1																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0045576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	502	500	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
RB1	5925	MSKCC	GRCh37	13	48954105	48954336	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAAAAAAAAAAAAATTCAATGCTGACACAAATAAGGTTTCAATTAAACAACTTCTTTTTTTTTTTTTAAATTATCTGTTTCAGGAAGAAGAACGATTATCCATTCAAAATTTTAGGTAAATTTTTTACTTTTAGTAAAAAATTTTTTTCTTTTTATAGAAGTAAGTATTTTATAATCTTTTTTTTTTTCCTTTAGCAAACTTCTGAATGACAACATTTTTCATATGTCTTT	AAAAAAAAAAAAAAATTCAATGCTGACACAAATAAGGTTTCAATTAAACAACTTCTTTTTTTTTTTTTAAATTATCTGTTTCAGGAAGAAGAACGATTATCCATTCAAAATTTTAGGTAAATTTTTTACTTTTAGTAAAAAATTTTTTTCTTTTTATAGAAGTAAGTATTTTATAATCTTTTTTTTTTTCCTTTAGCAAACTTCTGAATGACAACATTTTTCATATGTCTTT	-			P-0045576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	35	43	0	ENST00000267163.4:c.1390-83_1458del		p.X464_splice	ENST00000267163	NM_000321.2	464																																																																																
MAP2K4	6416	MSKCC	GRCh37	17	12013744	12013744	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0045576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	121	244	0	ENST00000353533.5:c.685+1G>A		p.X229_splice	ENST00000353533	NM_003010.3	229																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49424114	49424114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	158	675	0	ENST00000301067.7:c.13948G>A	p.Glu4650Lys	p.E4650K	ENST00000301067	NM_003482.3	4650	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431339	49431339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	98	492	0	ENST00000301067.7:c.9800C>T	p.Ser3267Leu	p.S3267L	ENST00000301067	NM_003482.3	3267	tCa/tTa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858258	9858258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	123	339	0	ENST00000330684.3:c.3143G>T	p.Ser1048Ile	p.S1048I	ENST00000330684	NM_001134407.1	1048	aGc/aTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832607	72832607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	54	205	0	ENST00000268489.5:c.3974C>T	p.Ser1325Leu	p.S1325L	ENST00000268489	NM_006885.3	1325	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579425	7579425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	173	692	1	ENST00000269305.4:c.262del	p.Ala88ProfsTer35	p.A88Pfs*35	ENST00000269305	NM_001126112.2	88	Gcc/cc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272328	15272328	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	251	948	0	ENST00000263388.2:c.6111C>G	p.His2037Gln	p.H2037Q	ENST00000263388	NM_000435.2	2037	caC/caG																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367984	15367984	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	193	529	0	ENST00000263377.2:c.1342G>C	p.Asp448His	p.D448H	ENST00000263377	NM_058243.2	448	Gat/Cat																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182631	38182631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	76	246	0	ENST00000396334.3:c.784C>T	p.Gln262Ter	p.Q262*	ENST00000396334	NM_002468.4	262	Cag/Tag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	106	247	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	142949964	142949964	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	33	333	0	ENST00000262992.4:c.2746G>C	p.Glu916Gln	p.E916Q	ENST00000262992	NM_001101669.1	916	Gag/Cag																																																																															
MSH3	4437	MSKCC	GRCh37	5	79965934	79965934	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	41	229	0	ENST00000265081.6:c.598C>G	p.Leu200Val	p.L200V	ENST00000265081	NM_002439.4	200	Ctc/Gtc																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	60	390	0	ENST00000244661.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000244661	NM_003537.3	74	Gaa/Caa																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910349	29910349	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	434	832	0	ENST00000376809.5:c.19C>T	p.Arg7Ter	p.R7*	ENST00000376809	NM_002116.7	7	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	140	513	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
SYK	6850	MSKCC	GRCh37	9	93639929	93639929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	25	228	0	ENST00000375746.1:c.1258G>C	p.Glu420Gln	p.E420Q	ENST00000375746	NM_001174167.1	420	Gaa/Caa																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123504167	123504167	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	12	216	0	ENST00000371139.4:c.343A>C	p.Thr115Pro	p.T115P	ENST00000371139	NM_001114937.2	115	Aca/Cca																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0045687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	988	664	2	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0045687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	40	625	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
SMAD3	4088	MSKCC	GRCh37	15	67473698	67473698	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	55	585	0	ENST00000327367.4:c.778T>A	p.Phe260Ile	p.F260I	ENST00000327367	NM_005902.3	260	Ttc/Atc																																																																															
PARK2	5071	MSKCC	GRCh37	6	161781200	161781200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	31	542	0	ENST00000366898.1:c.1205G>A	p.Arg402His	p.R402H	ENST00000366898	NM_004562.2	402	cGt/cAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0045696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	162	424	2	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0045696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	231	954	2	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0045696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	81	343	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117631301	117631301	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199882276		P-0045696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	59	359	0	ENST00000368508.3:c.6377G>A	p.Arg2126Gln	p.R2126Q	ENST00000368508	NM_002944.2	2126	cGg/cAg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936089	71936089	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	15	124	0	ENST00000298229.2:c.61T>C	p.Trp21Arg	p.W21R	ENST00000298229	NM_001567.3	21	Tgg/Cgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178603	32178603	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201560532		P-0045696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	73	783	0	ENST00000375023.3:c.2791G>A	p.Val931Met	p.V931M	ENST00000375023	NM_004557.3	931	Gtg/Atg																																																																															
HGF	3082	MSKCC	GRCh37	7	81334990	81334990	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	349	334	0	ENST00000222390.5:c.1837A>T	p.Ser613Cys	p.S613C	ENST00000222390	NM_000601.4	613	Agt/Tgt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907019	101907019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	39	177	0	ENST00000374994.4:c.979C>G	p.Pro327Ala	p.P327A	ENST00000374994	NM_004612.2	327	Cca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0045697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	429	476	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	96	335	0				ENST00000310581	NM_198253.2																																																																																	
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	83	171	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0045697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	181	311	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983120	201983121	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	143	565	0	ENST00000359651.3:c.970dup	p.Met324AsnfsTer147	p.M324Nfs*147	ENST00000359651		323	-/A																																																																															
APC	324	MSKCC	GRCh37	5	112176017	112176017	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	76	167	0	ENST00000257430.4:c.4726G>T	p.Glu1576Ter	p.E1576*	ENST00000257430	NM_000038.5	1576	Gaa/Taa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624301	89624302	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	136	451	0	ENST00000371953.3:c.75_76insC	p.Thr26HisfsTer18	p.T26Hfs*18	ENST00000371953	NM_000314.4	25	-/C																																																																															
FLT3	2322	MSKCC	GRCh37	13	28611411	28611412	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	89	202	0	ENST00000241453.7:c.1219dup	p.Cys407LeufsTer4	p.C407Lfs*4	ENST00000241453	NM_004119.2	407	tgc/tTgc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627804	37627805	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	185	549	0	ENST00000447079.4:c.1720dup	p.Ser574LysfsTer67	p.S574Kfs*67	ENST00000447079	NM_015083.1	573	-/A																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021693	69021693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	133	380	0	ENST00000288368.4:c.2981C>T	p.Thr994Ile	p.T994I	ENST00000288368	NM_024870.2	994	aCc/aTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412139	63412142	+	frameshift_variant	Frame_Shift_Del	DEL	CTGT	CTGT	-			P-0045697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	256	694	0	ENST00000330258.3:c.1025_1028del	p.Asp342AlafsTer21	p.D342Afs*21	ENST00000330258	NM_152424.3	342	gACAGc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			445	97	277	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144096	11144098	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0044941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			683	97	521	0	ENST00000344626.4:c.3679_3681delAAG	p.Lys1227del	p.K1227del	ENST00000344626	NM_003072.3	1226	cAGAag/cag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602869	10602869	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			716	242	584	0	ENST00000171111.5:c.709C>G	p.Leu237Val	p.L237V	ENST00000171111	NM_203500.1	237	Ctg/Gtg																																																																															
STK11	6794	MSKCC	GRCh37	19	1206984	1206988	+	frameshift_variant	Frame_Shift_Del	DEL	GTTCA	GTTCA	-			P-0044941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			559	160	387	0	ENST00000326873.7:c.72_76del	p.Phe25ProfsTer136	p.F25Pfs*136	ENST00000326873	NM_000455.4	24	acGTTCAtc/actc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11186763	11186763	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			745	154	406	0	ENST00000361445.4:c.6442C>T	p.Gln2148Ter	p.Q2148*	ENST00000361445	NM_004958.3	2148	Cag/Tag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724577	162724586	+	frameshift_variant	Frame_Shift_Del	DEL	ATGTACAAGA	ATGTACAAGA	-			P-0044941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			810	135	375	0	ENST00000367921.3:c.349_358del	p.Met117SerfsTer33	p.M117Sfs*33	ENST00000367921	NM_006182.2	117	ATGTACAAGAtc/tc																																																																															
KIT	3815	MSKCC	GRCh37	4	55573302	55573302	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	86	295	0	ENST00000288135.5:c.964A>T	p.Thr322Ser	p.T322S	ENST00000288135	NM_000222.2	322	Aca/Tca																																																																															
HGF	3082	MSKCC	GRCh37	7	81350151	81350151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	157	248	0	ENST00000222390.5:c.1181G>A	p.Gly394Glu	p.G394E	ENST00000222390	NM_000601.4	394	gGg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0045551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	171	696	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519477	176519477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	82	734	0	ENST00000292408.4:c.883G>A	p.Gly295Arg	p.G295R	ENST00000292408	NM_213647.1	295	Gga/Aga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573456	48573456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	18	199	0	ENST00000342988.3:c.40G>T	p.Asp14Tyr	p.D14Y	ENST00000342988	NM_005359.5	14	Gat/Tat																																																																															
ATR	545	MSKCC	GRCh37	3	142218561	142218561	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0045551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	33	237	1	ENST00000350721.4:c.5289-1G>T		p.X1763_splice	ENST00000350721	NM_001184.3	1763																																																																																
BCL6	604	MSKCC	GRCh37	3	187446885	187446893	+	inframe_deletion	In_Frame_Del	DEL	CTCCCCGCT	CTCCCCGCT	-			P-0045551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	145	574	0	ENST00000232014.4:c.1300_1308del	p.Ser434_Glu436del	p.S434_E436del	ENST00000232014	NM_001130845.1	434	AGCGGGGAG/-																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997826	149997826	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	118	480	1	ENST00000253339.5:c.2641del	p.Asp881IlefsTer11	p.D881Ifs*11	ENST00000253339		881	Gat/at																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280804	41280804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	12	333	0	ENST00000349496.5:c.2317C>T	p.Gln773Ter	p.Q773*	ENST00000349496	NM_001904.3	773	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	115	529	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
TP53	7157	MSKCC	GRCh37	17	7578488	7578488	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	150	718	0	ENST00000269305.4:c.442G>C	p.Asp148His	p.D148H	ENST00000269305	NM_001126112.2	148	Gat/Cat																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472600	88472600	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	123	384	0	ENST00000360948.2:c.1955G>T	p.Gly652Val	p.G652V	ENST00000360948	NM_001012338.2	652	gGg/gTg																																																																															
BLM	641	MSKCC	GRCh37	15	91346876	91346876	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	85	353	0	ENST00000355112.3:c.3484A>G	p.Asn1162Asp	p.N1162D	ENST00000355112	NM_000057.2	1162	Aat/Gat																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488657	212488657	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	103	386	0	ENST00000342788.4:c.2192C>A	p.Thr731Lys	p.T731K	ENST00000342788	NM_005235.2	731	aCg/aAg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530171	212530171	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	70	271	0	ENST00000342788.4:c.1748T>A	p.Phe583Tyr	p.F583Y	ENST00000342788	NM_005235.2	583	tTt/tAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212615390	212615390	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	113	398	0	ENST00000342788.4:c.596del	p.Gly199AspfsTer10	p.G199Dfs*10	ENST00000342788	NM_005235.2	199	gGa/ga																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021820	71021820	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	53	192	0	ENST00000318789.4:c.1538T>A	p.Val513Glu	p.V513E	ENST00000318789	NM_032682.5	513	gTg/gAg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104579	69104579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	114	533	0	ENST00000288368.4:c.4423C>T	p.Pro1475Ser	p.P1475S	ENST00000288368	NM_024870.2	1475	Cct/Tct																																																																															
AGO2	27161	MSKCC	GRCh37	8	141570599	141570599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	166	419	0	ENST00000220592.5:c.529G>T	p.Val177Leu	p.V177L	ENST00000220592	NM_012154.3	177	Gtg/Ttg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900200	101900200	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	88	298	1	ENST00000374994.4:c.634G>T	p.Gly212Cys	p.G212C	ENST00000374994	NM_004612.2	212	Ggc/Tgc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410004	63410004	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	104	471	0	ENST00000330258.3:c.3163G>T	p.Val1055Phe	p.V1055F	ENST00000330258	NM_152424.3	1055	Gtt/Ttt																																																																															
BTK	695	MSKCC	GRCh37	X	100617654	100617654	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	119	496	0	ENST00000308731.7:c.415G>C	p.Val139Leu	p.V139L	ENST00000308731	NM_000061.2	139	Gtt/Ctt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288968	212288970	+	frameshift_variant	Frame_Shift_Del	DEL	CGT	CGT	AG			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	88	440	0	ENST00000342788.4:c.2776_2778delinsCT	p.Thr926LeufsTer8	p.T926Lfs*8	ENST00000342788	NM_005235.2	926	ACG/CT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	61	378	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099226	4099226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	136	589	0	ENST00000262948.5:c.892C>T	p.Pro298Ser	p.P298S	ENST00000262948	NM_030662.3	298	Ccg/Tcg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715643	30715643	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	100	217	0	ENST00000359013.4:c.1376T>G	p.Met459Arg	p.M459R	ENST00000359013	NM_001024847.2	459	aTg/aGg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33290691	33290691	+	5_prime_UTR_variant	5'UTR	SNP	T	T	C			P-0045558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	94	491	0	ENST00000374542.5:c.-105A>G		p.*35*	ENST00000374542	NM_001141970.1																																																																																	
CDKN2A	1029	MSKCC	GRCh37	9	21971178	21971182	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCA	CGCCA	-			P-0045558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	72	306	0	ENST00000304494.5:c.176_180del	p.Val59GlyfsTer59	p.V59Gfs*59	ENST00000304494	NM_000077.4	59	gTGGCG/g																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0045581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	36	320	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880997	37880998	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TGT			P-0045267-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			654	1612	666	0	ENST00000269571.5:c.2326_2327insTGT	p.Gly776delinsValCys	p.G776delinsVC	ENST00000269571		776	ggt/gTGTgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1279432	1279432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045267-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1607	894	881	0	ENST00000310581.5:c.2104C>T	p.Pro702Ser	p.P702S	ENST00000310581	NM_198253.2	702	Ccg/Tcg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966955	25966955	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045267-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	187	681	1	ENST00000435504.4:c.2251C>G	p.Gln751Glu	p.Q751E	ENST00000435504		751	Cag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577516	7577517	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0045267-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			117	644	566	0	ENST00000269305.4:c.764_765del	p.Ile255AsnfsTer8	p.I255Nfs*8	ENST00000269305	NM_001126112.2	255	aTC/a																																																																															
CTCF	10664	MSKCC	GRCh37	16	67660574	67660574	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045267-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			721	817	502	0	ENST00000264010.4:c.1474G>C	p.Glu492Gln	p.E492Q	ENST00000264010	NM_006565.3	492	Gag/Cag																																																																															
MSI2	124540	MSKCC	GRCh37	17	55674294	55674294	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045267-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			281	435	344	0	ENST00000284073.2:c.520G>T	p.Glu174Ter	p.E174*	ENST00000284073	NM_138962.2	174	Gaa/Taa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812163	212812163	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045267-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			165	108	240	0	ENST00000342788.4:c.413A>G	p.Asn138Ser	p.N138S	ENST00000342788	NM_005235.2	138	aAc/aGc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502314	157502314	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0045267-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			101	400	364	0	ENST00000346085.5:c.3345+2T>G		p.X1115_splice	ENST00000346085	NM_020732.3	1115																																																																																
AMER1	139285	MSKCC	GRCh37	X	63412888	63412888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045267-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			494	710	686	0	ENST00000330258.3:c.279C>A	p.Ser93Arg	p.S93R	ENST00000330258	NM_152424.3	93	agC/agA																																																																															
APC	324	MSKCC	GRCh37	5	112175015	112175015	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	63	166	0	ENST00000257430.4:c.3724C>T	p.Gln1242Ter	p.Q1242*	ENST00000257430	NM_000038.5	1242	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55228005	55228005	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	26	228	0	ENST00000275493.2:c.1472T>A	p.Ile491Lys	p.I491K	ENST00000275493	NM_005228.3	491	aTa/aAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0045496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	138	478	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0045496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	38	303	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	47	267	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	76	439	0	ENST00000269305.4:c.833C>A	p.Pro278His	p.P278H	ENST00000269305	NM_001126112.2	278	cCt/cAt																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39305347	39305347	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	83	350	0	ENST00000373001.3:c.1078C>T	p.Arg360Ter	p.R360*	ENST00000373001	NM_022157.3	360	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0045513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	6975	436	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221131	5221131	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201447856		P-0045513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	191	626	0	ENST00000357368.4:c.3335C>T	p.Thr1112Met	p.T1112M	ENST00000357368	NM_002850.3	1112	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577563	7577563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	275	438	0	ENST00000269305.4:c.718A>G	p.Ser240Gly	p.S240G	ENST00000269305	NM_001126112.2	240	Agt/Ggt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266821	198266821	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	319	438	0	ENST00000335508.6:c.2111T>A	p.Ile704Asn	p.I704N	ENST00000335508	NM_012433.2	704	aTc/aAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249091	55249091	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519861		P-0045513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	7120	544	0	ENST00000275493.2:c.2389T>A	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	Tgc/Agc																																																																															
JUN	3725	MSKCC	GRCh37	1	59247813	59247815	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-			P-0045513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	417	638	0	ENST00000371222.2:c.928_930del	p.Gln310del	p.Q310del	ENST00000371222	NM_002228.3	310	CAG/-																																																																															
JAK1	3716	MSKCC	GRCh37	1	65349089	65349089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	108	442	0	ENST00000342505.4:c.76G>A	p.Glu26Lys	p.E26K	ENST00000342505	NM_002227.2	26	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446460	49446460	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	156	491	0	ENST00000301067.7:c.1145C>A	p.Thr382Asn	p.T382N	ENST00000301067	NM_003482.3	382	aCt/aAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829145	72829145	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	338	484	0	ENST00000268489.5:c.7436C>A	p.Ser2479Ter	p.S2479*	ENST00000268489	NM_006885.3	2479	tCg/tAg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468453	89468453	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	60	277	0	ENST00000336596.2:c.1987C>G	p.Gln663Glu	p.Q663E	ENST00000336596	NM_005233.5	663	Cag/Gag																																																																															
KDR	3791	MSKCC	GRCh37	4	55948779	55948779	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	84	353	0	ENST00000263923.4:c.3686G>C	p.Arg1229Pro	p.R1229P	ENST00000263923	NM_002253.2	1229	cGa/cCa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507365	8507365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	322	279	0	ENST00000356435.5:c.1613C>A	p.Pro538His	p.P538H	ENST00000356435		538	cCt/cAt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	203	467	2	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	244	537	0	ENST00000269305.4:c.853G>T	p.Glu285Ter	p.E285*	ENST00000269305	NM_001126112.2	285	Gag/Tag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979365	93979365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	49	278	0	ENST00000369303.4:c.1463G>T	p.Arg488Leu	p.R488L	ENST00000369303	NM_004440.3	488	cGg/cTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636758	8636758	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	101	370	0	ENST00000356435.5:c.151C>A	p.Pro51Thr	p.P51T	ENST00000356435		51	Cca/Aca																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040945	47040945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	136	408	0	ENST00000329236.7:c.1241C>T	p.Ser414Leu	p.S414L	ENST00000329236	NM_001204466.1	414	tCg/tTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549443	187549443	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	73	501	1	ENST00000441802.2:c.4675G>T	p.Ala1559Ser	p.A1559S	ENST00000441802	NM_005245.3	1559	Gcc/Tcc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741336	17741336	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1175	235	582	0	ENST00000250003.3:c.7C>A	p.Leu3Ile	p.L3I	ENST00000250003	NM_002478.4	3	Cta/Ata																																																																															
RARA	5914	MSKCC	GRCh37	17	38510611	38510611	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	173	598	0	ENST00000254066.5:c.865G>T	p.Gly289Trp	p.G289W	ENST00000254066	NM_000964.3	289	Ggg/Tgg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557599	21557599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	188	527	0	ENST00000382592.4:c.2246C>T	p.Pro749Leu	p.P749L	ENST00000382592	NM_014572.2	749	cCt/cTt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30132954	30132954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	298	486	0	ENST00000331968.5:c.647G>T	p.Arg216Leu	p.R216L	ENST00000331968	NM_002742.2	216	cGc/cTc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679208	88679208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	131	545	0	ENST00000360948.2:c.829G>A	p.Asp277Asn	p.D277N	ENST00000360948	NM_001012338.2	277	Gac/Aac																																																																															
SLX4	84464	MSKCC	GRCh37	16	3651062	3651062	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	157	542	0	ENST00000294008.3:c.1081G>C	p.Glu361Gln	p.E361Q	ENST00000294008	NM_032444.2	361	Gag/Cag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67662344	67662344	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	55	455	0	ENST00000264010.4:c.1590G>C	p.Lys530Asn	p.K530N	ENST00000264010	NM_006565.3	530	aaG/aaC																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349942	89349942	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1180	178	719	0	ENST00000301030.4:c.3008A>G	p.His1003Arg	p.H1003R	ENST00000301030	NM_001256183.1	1003	cAc/cGc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59934439	59934439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	39	305	0	ENST00000259008.2:c.359G>T	p.Gly120Val	p.G120V	ENST00000259008	NM_032043.2	120	gGc/gTc																																																																															
INSR	3643	MSKCC	GRCh37	19	7117407	7117407	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	82	527	0	ENST00000302850.5:c.3809G>T	p.Arg1270Leu	p.R1270L	ENST00000302850	NM_000208.2	1270	cGc/cTc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24133968	24133969	+	missense_variant	Missense_Mutation	DNP	GA	GA	CT			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	30	319	0	ENST00000263121.7:c.119_120delinsCT	p.Arg40Pro	p.R40P	ENST00000263121	NM_003073.3	40	cGA/cCT																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933680	49933680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1267	188	665	0	ENST00000296474.3:c.2597C>T	p.Pro866Leu	p.P866L	ENST00000296474	NM_002447.2	866	cCc/cTc																																																																															
ATR	545	MSKCC	GRCh37	3	142272239	142272239	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	87	244	0	ENST00000350721.4:c.2635G>A	p.Ala879Thr	p.A879T	ENST00000350721	NM_001184.3	879	Gcc/Acc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356349	66356349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	72	371	0	ENST00000273854.3:c.1148C>A	p.Thr383Asn	p.T383N	ENST00000273854	NM_004439.5	383	aCt/aAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187516891	187516891	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	59	417	0	ENST00000441802.2:c.13090G>T	p.Glu4364Ter	p.E4364*	ENST00000441802	NM_005245.3	4364	Gaa/Taa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752789	57752789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	103	239	0	ENST00000274289.3:c.1139G>T	p.Arg380Ile	p.R380I	ENST00000274289	NM_006622.3	380	aGa/aTa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149514541	149514541	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	107	433	0	ENST00000261799.4:c.403C>A	p.Leu135Ile	p.L135I	ENST00000261799	NM_002609.3	135	Cta/Ata																																																																															
LATS1	9113	MSKCC	GRCh37	6	150016209	150016209	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	69	283	0	ENST00000253339.5:c.496+1G>T		p.X166_splice	ENST00000253339		166																																																																																
TSC1	7248	MSKCC	GRCh37	9	135771790	135771790	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	138	585	0	ENST00000298552.3:c.3327G>T	p.Met1109Ile	p.M1109I	ENST00000298552	NM_001162426.1	1109	atG/atT																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123504171	123504171	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	40	188	0	ENST00000371139.4:c.346+1G>A		p.X116_splice	ENST00000371139	NM_001114937.2	116																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	160	330	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0045518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	95	268	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473779	67473779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	411	539	1	ENST00000327367.4:c.859C>T	p.Arg287Trp	p.R287W	ENST00000327367	NM_005902.3	287	Cgg/Tgg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139774	55139774	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	187	516	0	ENST00000257290.5:c.1435C>T	p.Arg479Ter	p.R479*	ENST00000257290	NM_006206.4	479	Cga/Tga																																																																															
CBL	867	MSKCC	GRCh37	11	119103162	119103162	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	62	387	0	ENST00000264033.4:c.200T>C	p.Val67Ala	p.V67A	ENST00000264033	NM_005188.3	67	gTg/gCg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26978147	26978147	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	100	497	0	ENST00000381527.3:c.1324C>T	p.Gln442Ter	p.Q442*	ENST00000381527	NM_001260.1	442	Cag/Tag																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374995	45374996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	183	368	0	ENST00000262160.6:c.847_848insC	p.Asn283ThrfsTer38	p.N283Tfs*38	ENST00000262160	NM_005901.5	283	aat/aCat																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71102789	71102789	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0045518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	39	258	0	ENST00000318789.4:c.418C>A	p.Gln140Lys	p.Q140K	ENST00000318789	NM_032682.5	140	Cag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175782	112175788	+	frameshift_variant	Frame_Shift_Del	DEL	AGATGGA	AGATGGA	-			P-0045518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	107	249	0	ENST00000257430.4:c.4491_4497del	p.Asp1498PhefsTer7	p.D1498Ffs*7	ENST00000257430	NM_000038.5	1497	ccAGATGGA/cc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2979457	2979457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	101	504	0	ENST00000396946.4:c.790G>C	p.Glu264Gln	p.E264Q	ENST00000396946	NM_032415.4	264	Gag/Cag																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652426	48652426	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	142	339	0	ENST00000376670.3:c.1097G>T	p.Gly366Val	p.G366V	ENST00000376670	NM_002049.3	366	gGc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	35	356	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0045519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	139	568	0	ENST00000269305.4:c.920-1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
APC	324	MSKCC	GRCh37	5	112174745	112174745	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	29	289	0	ENST00000257430.4:c.3454C>T	p.Gln1152Ter	p.Q1152*	ENST00000257430	NM_000038.5	1152	Cag/Tag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3799648	3799648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	51	361	0	ENST00000262367.5:c.3816del	p.Asn1272LysfsTer4	p.N1272Kfs*4	ENST00000262367	NM_004380.2	1272	aaT/aa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41256961	41256961	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	76	442	0	ENST00000357654.3:c.225A>C	p.Glu75Asp	p.E75D	ENST00000357654	NM_007294.3	75	gaA/gaC																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244288	153244288	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	28	257	0	ENST00000281708.4:c.1869T>G	p.His623Gln	p.H623Q	ENST00000281708	NM_033632.3	623	caT/caG																																																																															
APC	324	MSKCC	GRCh37	5	112175274	112175275	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0045519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	29	259	0	ENST00000257430.4:c.3983_3984del	p.Gln1328ProfsTer3	p.Q1328Pfs*3	ENST00000257430	NM_000038.5	1328	cAG/c																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540266	23540266	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	69	437	0	ENST00000380871.4:c.137C>G	p.Thr46Arg	p.T46R	ENST00000380871	NM_006167.3	46	aCg/aGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0045530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	470	573	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0045530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	11	483	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0045530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	27	200	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259091	89259091	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	32	321	0	ENST00000336596.2:c.235A>T	p.Asn79Tyr	p.N79Y	ENST00000336596	NM_005233.5	79	Aac/Tac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984058	2984058	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	229	572	0	ENST00000396946.4:c.472del	p.Gln158SerfsTer9	p.Q158Sfs*9	ENST00000396946	NM_032415.4	158	Cag/ag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853293	151853293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	58	393	0	ENST00000262189.6:c.11809G>A	p.Glu3937Lys	p.E3937K	ENST00000262189	NM_170606.2	3937	Gaa/Aaa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411224	63411224	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	145	628	0	ENST00000330258.3:c.1943A>G	p.Glu648Gly	p.E648G	ENST00000330258	NM_152424.3	648	gAg/gGg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0045531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	142	82	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0045531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	254	719	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0045531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	146	181	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98238356	98238356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	179	543	0	ENST00000331920.6:c.1688C>T	p.Ala563Val	p.A563V	ENST00000331920	NM_000264.3	563	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	93	504	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524613	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0045537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	38	201	0	ENST00000355739.4:c.2750_2751del	p.Lys917IlefsTer12	p.K917Ifs*12	ENST00000355739	NM_000123.3	915	AAa/a																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249013	55249014	+	protein_altering_variant	In_Frame_Ins	INS	AA	AA	GGGTT			P-0045537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	286	549	6	ENST00000275493.2:c.2311_2312delinsGGGTT	p.Asn771delinsGlyPhe	p.N771delinsGF	ENST00000275493	NM_005228.3	771	AAc/GGGTTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105966	27105966	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	70	405	1	ENST00000324856.7:c.5577del	p.Phe1859LeufsTer24	p.F1859Lfs*24	ENST00000324856	NM_006015.4	1859	ttC/tt																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599975	28599975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	84	560	3	ENST00000253063.3:c.857G>A	p.Arg286His	p.R286H	ENST00000253063	NM_031459.4	286	cGc/cAc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524718	103524718	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	29	249	0	ENST00000355739.4:c.2853del	p.Lys952AsnfsTer30	p.K952Nfs*30	ENST00000355739	NM_000123.3	950	tGg/tg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	51	377	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	94	286	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	91	274	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	36	790	2	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	43	485	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	51	585	0	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967305	25967305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	46	310	0	ENST00000435504.4:c.1901C>T	p.Ser634Leu	p.S634L	ENST00000435504		634	tCg/tTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	94	405	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	43	463	3	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185198193	185198193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	49	441	1	ENST00000265026.3:c.2675C>T	p.Thr892Met	p.T892M	ENST00000265026	NM_004721.4	892	aCg/aTg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193202211	193202211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	58	339	0	ENST00000367435.3:c.1247del	p.Gly416AlafsTer12	p.G416Afs*12	ENST00000367435	NM_024529.4	415	Ggg/gg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61726051	61726052	+	splice_region_variant,intron_variant	Splice_Region	DEL	AA	AA	-			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	30	191	0	ENST00000401558.2:c.591-4_591-3delTT		p.X197_splice	ENST00000401558	NM_003400.3	197																																																																																
TAP2	6891	MSKCC	GRCh37	6	32805731	32805731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	74	605	0	ENST00000374899.4:c.280G>A	p.Val94Ile	p.V94I	ENST00000374899	NM_018833.2	94	Gtc/Atc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022586	31022586	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	48	417	0	ENST00000375687.4:c.2071C>A	p.Leu691Ile	p.L691I	ENST00000375687	NM_015338.5	691	Cta/Ata																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	95	687	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223725	53223725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	79	728	1	ENST00000375401.3:c.3634C>T	p.Arg1212Trp	p.R1212W	ENST00000375401	NM_004187.3	1212	Cgg/Tgg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120471679	120471679	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	40	442	0	ENST00000256646.2:c.3812A>G	p.Asn1271Ser	p.N1271S	ENST00000256646	NM_024408.3	1271	aAc/aGc																																																																															
BARD1	580	MSKCC	GRCh37	2	215610467	215610468	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	31	310	1	ENST00000260947.4:c.1788dup	p.Tyr597IlefsTer3	p.Y597Ifs*3	ENST00000260947	NM_000465.2	596	-/A																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032092	10032092	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201674066		P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	49	456	0	ENST00000330684.3:c.731G>A	p.Arg244His	p.R244H	ENST00000330684	NM_001134407.1	244	cGc/cAc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225400312	225400312	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768929186		P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	39	195	0	ENST00000264414.4:c.311C>T	p.Thr104Met	p.T104M	ENST00000264414	NM_003590.4	104	aCg/aTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923037	39923037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	69	559	1	ENST00000378444.4:c.3671C>T	p.Ala1224Val	p.A1224V	ENST00000378444	NM_001123385.1	1224	gCa/gTa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909490	50909490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	93	729	0	ENST00000440232.2:c.1294C>T	p.Arg432Trp	p.R432W	ENST00000440232	NM_002691.3	432	Cgg/Tgg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982996	201982998	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	114	628	0	ENST00000359651.3:c.847_849del	p.Leu283del	p.L283del	ENST00000359651		282	aTCCtc/atc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435258	49435258	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	169	653	1	ENST00000301067.7:c.6295C>T	p.Arg2099Ter	p.R2099*	ENST00000301067	NM_003482.3	2099	Cga/Tga																																																																															
CDH1	999	MSKCC	GRCh37	16	68842662	68842662	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	40	559	0	ENST00000261769.5:c.602delC	p.Pro201LeufsTer14	p.P201Lfs*14	ENST00000261769	NM_004360.3	200	Ccc/cc																																																																															
RARA	5914	MSKCC	GRCh37	17	38510660	38510660	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	74	563	0	ENST00000254066.5:c.914T>A	p.Leu305His	p.L305H	ENST00000254066	NM_000964.3	305	cTc/cAc																																																																															
RARA	5914	MSKCC	GRCh37	17	38512323	38512324	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	41	532	0	ENST00000254066.5:c.1237dup	p.Met413AsnfsTer33	p.M413Nfs*33	ENST00000254066	NM_000964.3	412	gaa/gAaa																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40458406	40458406	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	28	157	0	ENST00000345506.4:c.1621A>G	p.Ser541Gly	p.S541G	ENST00000345506	NM_003152.3	541	Agc/Ggc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117800	70117800	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	27	610	0	ENST00000245479.2:c.270del	p.Met91CysfsTer19	p.M91Cfs*19	ENST00000245479	NM_000346.3	90	Ccc/cc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15297973	15297973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	35	775	0	ENST00000263388.2:c.1783G>A	p.Gly595Ser	p.G595S	ENST00000263388	NM_000435.2	595	Ggc/Agc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349706	15349711	+	inframe_deletion	In_Frame_Del	DEL	GCTGCT	GCTGCT	-			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	44	652	2	ENST00000263377.2:c.3863_3868del	p.Gln1288_Gln1289del	p.Q1288_Q1289del	ENST00000263377	NM_058243.2	1288	cAGCAGCgc/cgc																																																																															
IDH1	3417	MSKCC	GRCh37	2	209103827	209103827	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	55	352	0	ENST00000345146.2:c.1122G>T	p.Lys374Asn	p.K374N	ENST00000345146	NM_005896.2	374	aaG/aaT																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675472	30675472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775063662		P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	107	657	1	ENST00000376406.3:c.2884G>A	p.Ala962Thr	p.A962T	ENST00000376406	NM_014641.2	962	Gcc/Acc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741892	145741892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	94	705	0	ENST00000428558.2:c.611C>T	p.Ala204Val	p.A204V	ENST00000428558	NM_004260.3	204	gCc/gTc																																																																															
ATRX	546	MSKCC	GRCh37	X	76938413	76938413	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	36	434	0	ENST00000373344.5:c.2335delA	p.Arg779GlyfsTer24	p.R779Gfs*24	ENST00000373344	NM_000489.3	779	Agg/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	57	231	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RAC2	5880	MSKCC	GRCh37	22	37627415	37627415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	143	615	1	ENST00000249071.6:c.304C>T	p.Arg102Trp	p.R102W	ENST00000249071	NM_002872.4	102	Cgg/Tgg																																																																															
STK11	6794	MSKCC	GRCh37	19	1219343	1219344	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0038685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	108	475	0	ENST00000326873.7:c.396_397del	p.Cys134TrpfsTer28	p.C134Wfs*28	ENST00000326873	NM_000455.4	132	tGC/t																																																																															
APC	324	MSKCC	GRCh37	5	112174205	112174205	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	57	241	0	ENST00000257430.4:c.2915del	p.Gly972ValfsTer8	p.G972Vfs*8	ENST00000257430	NM_000038.5	972	Ggt/gt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0045359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	87	539	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0045359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	276	535	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
AXL	558	MSKCC	GRCh37	19	41748895	41748895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	295	822	1	ENST00000301178.4:c.1420C>T	p.Arg474Trp	p.R474W	ENST00000301178	NM_021913.4	474	Cgg/Tgg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119780	70119781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	282	798	0	ENST00000245479.2:c.788dupG	p.Arg264GlnfsTer32	p.R264Qfs*32	ENST00000245479	NM_000346.3	261	gag/gaGg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5243984	5243984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	358	983	1	ENST00000357368.4:c.1498C>T	p.Arg500Trp	p.R500W	ENST00000357368	NM_002850.3	500	Cgg/Tgg																																																																															
SMO	6608	MSKCC	GRCh37	7	128843242	128843242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	675	991	2	ENST00000249373.3:c.349C>T	p.Arg117Cys	p.R117C	ENST00000249373	NM_005631.4	117	Cgc/Tgc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117878	70117888	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCAGGCGGC	GCGCAGGCGGC	-			P-0045359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	187	796	1	ENST00000245479.2:c.353_363del	p.Ala118GlufsTer130	p.A118Efs*130	ENST00000245479	NM_000346.3	116	GCGCAGGCGGCg/g																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575186	48575186	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	91	372	0	ENST00000342988.3:c.380G>T	p.Cys127Phe	p.C127F	ENST00000342988	NM_005359.5	127	tGt/tTt																																																																															
APC	324	MSKCC	GRCh37	5	112175784	112175799	+	frameshift_variant	Frame_Shift_Del	DEL	ATGGATTTTCTTGTTC	ATGGATTTTCTTGTTC	-			P-0045359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	213	359	0	ENST00000257430.4:c.4495_4510del	p.Gly1499ProfsTer3	p.G1499Pfs*3	ENST00000257430	NM_000038.5	1498	gATGGATTTTCTTGTTCa/ga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114799841	114799841	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	299	739	0	ENST00000543371.1:c.508C>T	p.Gln170Ter	p.Q170*	ENST00000543371	NM_001198531.1	170	Caa/Taa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	423	688	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683565	162683565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	127	585	0	ENST00000366898.1:c.404G>A	p.Gly135Glu	p.G135E	ENST00000366898	NM_004562.2	135	gGa/gAa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69030847	69030847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	119	426	0	ENST00000288368.4:c.3389G>T	p.Ser1130Ile	p.S1130I	ENST00000288368	NM_024870.2	1130	aGc/aTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	179	482	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0045362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	218	353	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0045362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	281	368	0	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs483352697		P-0045362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	223	730	1	ENST00000269305.4:c.587G>A	p.Arg196Gln	p.R196Q	ENST00000269305	NM_001126112.2	196	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	51	222	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302628	15302628	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1418	84	1026	1	ENST00000263388.2:c.730C>T	p.Arg244Ter	p.R244*	ENST00000263388	NM_000435.2	244	Cga/Tga																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200113	128200113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	55	745	1	ENST00000341105.2:c.1192C>T	p.Arg398Trp	p.R398W	ENST00000341105	NM_032638.4	398	Cgg/Tgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900414	32900414	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	131	408	0	ENST00000380152.3:c.511G>T	p.Val171Leu	p.V171L	ENST00000380152		171	Gtg/Ttg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912173	114912173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	249	635	0	ENST00000543371.1:c.1243C>A	p.Pro415Thr	p.P415T	ENST00000543371	NM_001198531.1	415	Ccc/Acc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17117050	17117050	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	288	726	0	ENST00000285071.4:c.1659G>A	p.Trp553Ter	p.W553*	ENST00000285071	NM_144997.5	553	tgG/tgA																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223278	36223278	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1373	345	1215	0	ENST00000222270.7:c.5828C>G	p.Pro1943Arg	p.P1943R	ENST00000222270	NM_014727.1	1943	cCt/cGt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459782	149459782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1186	100	954	2	ENST00000286301.3:c.425G>A	p.Arg142His	p.R142H	ENST00000286301	NM_005211.3	142	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0045364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	465	823	4	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	179	524	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0045364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	158	478	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45394805	45394805	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	144	381	1	ENST00000262160.6:c.544C>T	p.Arg182Ter	p.R182*	ENST00000262160	NM_005901.5	182	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175746	112175746	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	155	442	3	ENST00000257430.4:c.4455del	p.Asp1486IlefsTer21	p.D1486Ifs*21	ENST00000257430	NM_000038.5	1485	gcT/gc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473779	67473779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	132	734	2	ENST00000327367.4:c.859C>T	p.Arg287Trp	p.R287W	ENST00000327367	NM_005902.3	287	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	228	626	5	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517886	187517886	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	36	630	0	ENST00000441802.2:c.12808C>T	p.Arg4270Ter	p.R4270*	ENST00000441802	NM_005245.3	4270	Cga/Tga																																																																															
ABL1	25	MSKCC	GRCh37	9	133729510	133729510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	156	614	4	ENST00000318560.5:c.139C>T	p.Arg47Cys	p.R47C	ENST00000318560	NM_005157.4	47	Cgt/Tgt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	93	394	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	179	752	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	321	943	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	116	716	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	291	752	1	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	149	1022	7	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383999	84383999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150371881		P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	57	544	0	ENST00000321945.7:c.853C>T	p.Arg285Trp	p.R285W	ENST00000321945	NM_139076.2	285	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170792	11170792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	155	1003	4	ENST00000344626.4:c.4840C>T	p.Arg1614Trp	p.R1614W	ENST00000344626	NM_003072.3	1614	Cgg/Tgg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	173	841	9	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882049	36882050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	190	943	3	ENST00000358127.4:c.963dupC	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	-/C																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	120	794	5	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747889	41747889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	154	561	0	ENST00000226382.2:c.880G>A	p.Val294Ile	p.V294I	ENST00000226382	NM_003924.3	294	Gtc/Atc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249029	55249029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	140	822	2	ENST00000275493.2:c.2327G>A	p.Arg776His	p.R776H	ENST00000275493	NM_005228.3	776	cGc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	41991141	41991141	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	142	585	0	ENST00000219905.7:c.2092+2T>C		p.X698_splice	ENST00000219905	NM_001164273.1	698																																																																																
XRCC2	7516	MSKCC	GRCh37	7	152346220	152346220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	130	551	10	ENST00000359321.1:c.350del	p.Leu117TrpfsTer17	p.L117Wfs*17	ENST00000359321	NM_005431.1	117	tTg/tg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200267	138200267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	131	625	0	ENST00000237289.4:c.1685G>A	p.Arg562His	p.R562H	ENST00000237289	NM_001270507.1	562	cGt/cAt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	306	563	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	86	1163	2	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	163	1018	1	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286238	66286238	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	83	397	0	ENST00000273854.3:c.1448del	p.Asn483ThrfsTer18	p.N483Tfs*18	ENST00000273854	NM_004439.5	483	aAc/ac																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945726	17945726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	213	956	0	ENST00000458235.1:c.2134G>A	p.Gly712Ser	p.G712S	ENST00000458235	NM_000215.3	712	Ggc/Agc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127460	55127460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	113	541	2	ENST00000257290.5:c.248C>T	p.Thr83Met	p.T83M	ENST00000257290	NM_006206.4	83	aCg/aTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356281	66356282	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	130	630	0	ENST00000273854.3:c.1215_1216del	p.Cys405Ter	p.C405*	ENST00000273854	NM_004439.5	405	tgTGag/tgag																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607487	46607487	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	188	1015	3	ENST00000263734.3:c.1681delC	p.Gln561SerfsTer7	p.Q561Sfs*7	ENST00000263734	NM_001430.4	559	aCc/ac																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118934	70118934	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	71	933	2	ENST00000245479.2:c.506A>G	p.His169Arg	p.H169R	ENST00000245479	NM_000346.3	169	cAc/cGc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038781	47038781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	212	1069	1	ENST00000329236.7:c.557G>A	p.Arg186Gln	p.R186Q	ENST00000329236	NM_001204466.1	186	cGg/cAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822330	72822330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	209	1042	1	ENST00000268489.5:c.9845C>T	p.Ala3282Val	p.A3282V	ENST00000268489	NM_006885.3	3282	gCg/gTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65300294	65300294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	80	358	1	ENST00000342505.4:c.3416G>A	p.Arg1139Gln	p.R1139Q	ENST00000342505	NM_002227.2	1139	cGg/cAg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273060	18273060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	214	1007	0	ENST00000222254.8:c.950C>T	p.Ala317Val	p.A317V	ENST00000222254	NM_005027.3	317	gCc/gTc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022792	31022792	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	149	735	0	ENST00000375687.4:c.2277C>A	p.Cys759Ter	p.C759*	ENST00000375687	NM_015338.5	759	tgC/tgA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421701	49421701	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	151	822	2	ENST00000301067.7:c.14528del	p.Lys4843ArgfsTer15	p.K4843Rfs*15	ENST00000301067	NM_003482.3	4843	aAg/ag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65310523	65310525	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	130	736	0	ENST00000342505.4:c.2163_2165del	p.Leu722del	p.L722del	ENST00000342505	NM_002227.2	721	ctCCTg/ctg																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117690383	117690383	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	110	585	0	ENST00000369458.3:c.746G>C	p.Ser249Thr	p.S249T	ENST00000369458	NM_024626.3	249	aGt/aCt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156830733	156830733	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	29	105	0	ENST00000524377.1:c.7C>T	p.Arg3Ter	p.R3*	ENST00000524377	NM_002529.3	3	Cga/Tga																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022532	12022532	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	157	866	0	ENST00000396373.4:c.641del	p.Pro214ArgfsTer52	p.P214Rfs*52	ENST00000396373	NM_001987.4	213	tCc/tc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425928	49425928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	221	1039	1	ENST00000301067.7:c.12560G>T	p.Gly4187Val	p.G4187V	ENST00000301067	NM_003482.3	4187	gGg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443547	49443547	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	210	851	0	ENST00000301067.7:c.3824C>G	p.Ala1275Gly	p.A1275G	ENST00000301067	NM_003482.3	1275	gCt/gGt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28631536	28631536	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	94	478	0	ENST00000241453.7:c.432del	p.Phe144LeufsTer15	p.F144Lfs*15	ENST00000241453	NM_004119.2	144	ttT/tt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032303	10032303	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	131	692	0	ENST00000330684.3:c.520A>G	p.Thr174Ala	p.T174A	ENST00000330684	NM_001134407.1	174	Acc/Gcc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89857944	89857944	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	144	665	0	ENST00000389301.3:c.1226A>T	p.Asp409Val	p.D409V	ENST00000389301	NM_000135.2	409	gAc/gTc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40478219	40478219	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	129	510	0	ENST00000264657.5:c.1282-2A>G		p.X428_splice	ENST00000264657	NM_139276.2	428																																																																																
SOX9	6662	MSKCC	GRCh37	17	70117569	70117576	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCAGGA	GAGCAGGA	-			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	150	819	0	ENST00000245479.2:c.39_46del	p.Gln14GlyfsTer235	p.Q14Gfs*235	ENST00000245479	NM_000346.3	13	GAGCAGGAg/g																																																																															
RAF1	5894	MSKCC	GRCh37	3	12633222	12633222	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	90	672	0	ENST00000251849.4:c.1178A>C	p.Glu393Ala	p.E393A	ENST00000251849	NM_002880.3	393	gAg/gCg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250938	153250938	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	58	268	0	ENST00000281708.4:c.1123-1G>A		p.X375_splice	ENST00000281708	NM_033632.3	375																																																																																
TERT	7015	MSKCC	GRCh37	5	1294642	1294642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	180	697	1	ENST00000310581.5:c.359G>A	p.Arg120His	p.R120H	ENST00000310581	NM_198253.2	120	cGc/cAc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323322	31323322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	43	230	0	ENST00000412585.2:c.667G>A	p.Ala223Thr	p.A223T	ENST00000412585	NM_005514.6	223	Gcc/Acc																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997464	149997464	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	158	519	0	ENST00000253339.5:c.2815A>G	p.Ile939Val	p.I939V	ENST00000253339		939	Att/Gtt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859437	151859437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	118	550	0	ENST00000262189.6:c.11225G>A	p.Ser3742Asn	p.S3742N	ENST00000262189	NM_170606.2	3742	aGt/aAt																																																																															
LYN	4067	MSKCC	GRCh37	8	56863271	56863271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	151	635	1	ENST00000519728.1:c.415G>A	p.Ala139Thr	p.A139T	ENST00000519728	NM_002350.3	139	Gca/Aca																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900299	101900299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	95	425	0	ENST00000374994.4:c.733G>A	p.Glu245Lys	p.E245K	ENST00000374994	NM_004612.2	245	Gag/Aag																																																																															
KLF4	9314	MSKCC	GRCh37	9	110251317	110251317	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	144	742	0	ENST00000374672.4:c.20A>G	p.Glu7Gly	p.E7G	ENST00000374672	NM_004235.4	7	gAg/gGg																																																																															
ATRX	546	MSKCC	GRCh37	X	76939696	76939696	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	134	723	0	ENST00000373344.5:c.1052A>T	p.Glu351Val	p.E351V	ENST00000373344	NM_000489.3	351	gAg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0045378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	120	487	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0045378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	96	397	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579331	7579331	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	139	863	0	ENST00000269305.4:c.356C>G	p.Ala119Gly	p.A119G	ENST00000269305	NM_001126112.2	119	gCc/gGc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164727	36164727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1180	178	1027	2	ENST00000300305.3:c.1148C>T	p.Pro383Leu	p.P383L	ENST00000300305		383	cCg/cTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68867214	68867214	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	56	678	1	ENST00000261769.5:c.2461G>T	p.Asp821Tyr	p.D821Y	ENST00000261769	NM_004360.3	821	Gac/Tac																																																																															
XPO1	7514	MSKCC	GRCh37	2	61712994	61712994	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	52	573	0	ENST00000401558.2:c.2417T>C	p.Ile806Thr	p.I806T	ENST00000401558	NM_003400.3	806	aTa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	86	585	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0045401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	9	381	1	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0045412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	289	468	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																															
MST1R	4486	MSKCC	GRCh37	3	49924771	49924771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	269	681	1	ENST00000296474.3:c.4172G>A	p.Arg1391Gln	p.R1391Q	ENST00000296474	NM_002447.2	1391	cGg/cAg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198270100	198270100	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	101	284	0	ENST00000335508.6:c.1336A>T	p.Met446Leu	p.M446L	ENST00000335508	NM_012433.2	446	Atg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0045417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	190	643	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579361	7579361	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	223	625	0	ENST00000269305.4:c.326T>C	p.Phe109Ser	p.F109S	ENST00000269305	NM_001126112.2	109	tTc/tCc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210692	5210692	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0045417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	173	644	0	ENST00000357368.4:c.5359C>T	p.Arg1787Trp	p.R1787W	ENST00000357368	NM_002850.3	1787	Cgg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244392	5244392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	55	735	0	ENST00000357368.4:c.1090G>A	p.Val364Ile	p.V364I	ENST00000357368	NM_002850.3	364	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112173590	112173590	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	75	242	0	ENST00000257430.4:c.2299C>T	p.Gln767Ter	p.Q767*	ENST00000257430	NM_000038.5	767	Cag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	109	279	0	ENST00000304494.5:c.242C>A	p.Pro81His	p.P81H	ENST00000304494	NM_000077.4	81	cCc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3824585	3824585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	115	394	0	ENST00000262367.5:c.2268G>A	p.Met756Ile	p.M756I	ENST00000262367	NM_004380.2	756	atG/atA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0045418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	380	286	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578498	7578499	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0045418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	1744	755	0	ENST00000269305.4:c.430_431dup	p.Gln144HisfsTer27	p.Q144Hfs*27	ENST00000269305	NM_001126112.2	144	cag/caCAg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99203953	99203953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	86	214	0	ENST00000074304.5:c.2816G>A	p.Arg939Lys	p.R939K	ENST00000074304	NM_001134224.1	939	aGa/aAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0045468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	195	501	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448599	89448599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	67	468	0	ENST00000336596.2:c.1563C>A	p.Ser521Arg	p.S521R	ENST00000336596	NM_005233.5	521	agC/agA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577128	7577128	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	286	660	0	ENST00000269305.4:c.810T>G	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	ttT/ttG																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118360602	118360602	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0045468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	39	309	0	ENST00000534358.1:c.4575G>C	p.Trp1525Cys	p.W1525C	ENST00000534358	NM_005933.3	1525	tgG/tgC																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804207	46804207	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	268	719	0	ENST00000290295.7:c.800del	p.Arg267ProfsTer12	p.R267Pfs*12	ENST00000290295	NM_006361.5	267	cGc/cc																																																																															
MED12	9968	MSKCC	GRCh37	X	70349924	70349924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	198	418	0	ENST00000374080.3:c.3907G>A	p.Asp1303Asn	p.D1303N	ENST00000374080		1303	Gac/Aac																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	121	363	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	239	552	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	163	406	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	62	228	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788617	3788617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	83	267	0	ENST00000262367.5:c.4337G>A	p.Arg1446His	p.R1446H	ENST00000262367	NM_004380.2	1446	cGc/cAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	82	309	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45856014	45856014	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751084702		P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	277	657	2	ENST00000391945.4:c.1892G>A	p.Arg631His	p.R631H	ENST00000391945	NM_000400.3	631	cGc/cAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638456	176638456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	191	535	1	ENST00000439151.2:c.3056G>A	p.Arg1019His	p.R1019H	ENST00000439151	NM_022455.4	1019	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	16	467	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
APC	324	MSKCC	GRCh37	5	112176008	112176008	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	56	183	0	ENST00000257430.4:c.4717G>T	p.Glu1573Ter	p.E1573*	ENST00000257430	NM_000038.5	1573	Gaa/Taa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	138	495	2	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
CDH1	999	MSKCC	GRCh37	16	68845693	68845694	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	173	443	0	ENST00000261769.5:c.944dup	p.Asn315LysfsTer6	p.N315Kfs*6	ENST00000261769	NM_004360.3	313	-/A																																																																															
PMS2	5395	MSKCC	GRCh37	7	6035204	6035207	+	frameshift_variant	Frame_Shift_Del	DEL	CTGT	CTGT	-			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	81	298	0	ENST00000265849.7:c.861_864delACAG	p.Arg287SerfsTer19	p.R287Sfs*19	ENST00000265849	NM_000535.5	287	agACAG/ag																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196093	138196093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	111	217	0	ENST00000237289.4:c.407G>A	p.Arg136His	p.R136H	ENST00000237289	NM_001270507.1	136	cGc/cAc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635161	87635161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	125	356	0	ENST00000277120.3:c.2213C>T	p.Pro738Leu	p.P738L	ENST00000277120		738	cCa/cTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845958	151845959	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	129	423	0	ENST00000262189.6:c.13053dupA	p.Trp4352MetfsTer17	p.W4352Mfs*17	ENST00000262189	NM_170606.2	4351	-/A																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40368072	40368072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	234	507	1	ENST00000293328.3:c.1433C>T	p.Ala478Val	p.A478V	ENST00000293328	NM_012448.3	478	gCg/gTg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48018167	48018167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	187	474	0	ENST00000234420.5:c.362G>A	p.Arg121His	p.R121H	ENST00000234420	NM_000179.2	121	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685280	89685280	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	22	132	2	ENST00000371953.3:c.175T>C	p.Ser59Pro	p.S59P	ENST00000371953	NM_000314.4	59	Tca/Cca																																																																															
CIC	23152	MSKCC	GRCh37	19	42797375	42797376	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	290	919	0	ENST00000575354.2:c.3743dup	p.Leu1249ThrfsTer6	p.L1249Tfs*6	ENST00000575354	NM_015125.3	1246	agc/agCc																																																																															
STK40	83931	MSKCC	GRCh37	1	36809530	36809530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	291	791	0	ENST00000373129.3:c.935T>C	p.Val312Ala	p.V312A	ENST00000373129	NM_032017.1	312	gTc/gCc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939827	71939828	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	296	878	0	ENST00000298229.2:c.459dup	p.Thr154HisfsTer11	p.T154Hfs*11	ENST00000298229	NM_001567.3	152	gcc/gCcc																																																																															
ATM	472	MSKCC	GRCh37	11	108201106	108201106	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	61	269	0	ENST00000278616.4:c.7473G>A	p.Trp2491Ter	p.W2491*	ENST00000278616	NM_000051.3	2491	tgG/tgA																																																																															
POLE	5426	MSKCC	GRCh37	12	133218374	133218374	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	132	627	0	ENST00000320574.5:c.5237A>G	p.Asn1746Ser	p.N1746S	ENST00000320574	NM_006231.2	1746	aAc/aGc																																																																															
POLE	5426	MSKCC	GRCh37	12	133219564	133219564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	236	595	0	ENST00000320574.5:c.4570C>T	p.Pro1524Ser	p.P1524S	ENST00000320574	NM_006231.2	1524	Ccc/Tcc																																																																															
B2M	567	MSKCC	GRCh37	15	45007666	45007667	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	82	193	0	ENST00000558401.1:c.116dup	p.Ser40ValfsTer17	p.S40Vfs*17	ENST00000558401	NM_004048.2	38	gga/ggAa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223320	2223320	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	263	711	0	ENST00000326181.6:c.932A>C	p.Glu311Ala	p.E311A	ENST00000326181	NM_032271.2	311	gAg/gCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831426	72831426	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	67	432	0	ENST00000268489.5:c.5155A>T	p.Ile1719Phe	p.I1719F	ENST00000268489	NM_006885.3	1719	Att/Ttt																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627357	14627357	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	197	564	1	ENST00000254322.2:c.713T>A	p.Val238Asp	p.V238D	ENST00000254322	NM_006145.1	238	gTt/gAt																																																																															
ERF	2077	MSKCC	GRCh37	19	42754011	42754011	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	212	587	0	ENST00000222329.4:c.341T>C	p.Val114Ala	p.V114A	ENST00000222329	NM_006494.2	114	gTc/gCc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99136596	99136596	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	209	593	0	ENST00000074304.5:c.85A>G	p.Met29Val	p.M29V	ENST00000074304	NM_001134224.1	29	Atg/Gtg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522414	176522414	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	260	803	0	ENST00000292408.4:c.1603A>G	p.Asn535Asp	p.N535D	ENST00000292408	NM_213647.1	535	Aac/Gac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410136	139410136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	247	830	1	ENST00000277541.6:c.1702G>A	p.Asp568Asn	p.D568N	ENST00000277541	NM_017617.3	568	Gat/Aat																																																																															
CTCF	10664	MSKCC	GRCh37	16	67662351	67662351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	197	246	0	ENST00000264010.4:c.1597C>T	p.Arg533Cys	p.R533C	ENST00000264010	NM_006565.3	533	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0045304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	15	545	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			219	114	343	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			390	245	407	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057520005		P-0012809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			879	385	714	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467548	66467548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			444	56	328	1	ENST00000273854.3:c.721G>T	p.Ala241Ser	p.A241S	ENST00000273854	NM_004439.5	241	Gct/Tct																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031883	26031884	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0012809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			372	60	261	0	ENST00000244661.2:c.405_406delAG	p.Arg135SerfsTer12	p.R135Sfs*12	ENST00000244661	NM_003537.3	135	agAGcg/agcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398290	25398290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			258	64	326	0	ENST00000256078.4:c.29G>T	p.Gly10Val	p.G10V	ENST00000256078	NM_033360.2	10	gGa/gTa																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873251	136873251	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			485	133	429	0	ENST00000241393.3:c.247G>T	p.Ala83Ser	p.A83S	ENST00000241393	NM_003467.2	83	Gcc/Tcc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11288768	11288768	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			899	115	552	1	ENST00000361445.4:c.2987C>A	p.Thr996Lys	p.T996K	ENST00000361445	NM_004958.3	996	aCg/aAg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939042	36939043	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0012809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	165	816	0	ENST00000361632.4:c.666_667delinsTT	p.Met222_Asp223delinsIleTyr	p.M222_D223delinsIY	ENST00000361632		222	atGGat/atTTat																																																																															
ATM	472	MSKCC	GRCh37	11	108196257	108196257	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	88	336	0	ENST00000278616.4:c.6793T>C	p.Phe2265Leu	p.F2265L	ENST00000278616	NM_000051.3	2265	Ttc/Ctc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425417	49425417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	413	1004	0	ENST00000301067.7:c.13071G>T	p.Arg4357Ser	p.R4357S	ENST00000301067	NM_003482.3	4357	agG/agT																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135327	30135327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			510	79	383	0	ENST00000331968.5:c.491G>T	p.Gly164Val	p.G164V	ENST00000331968	NM_002742.2	164	gGa/gTa																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736106	204736106	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			393	140	287	0	ENST00000302823.3:c.463G>T	p.Glu155Ter	p.E155*	ENST00000302823	NM_005214.4	155	Gaa/Taa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31385002	31385002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			929	152	589	0	ENST00000328111.2:c.1387C>T	p.Leu463Phe	p.L463F	ENST00000328111	NM_006892.3	463	Ctt/Ttt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356193	66356193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			695	243	546	0	ENST00000273854.3:c.1304C>A	p.Thr435Lys	p.T435K	ENST00000273854	NM_004439.5	435	aCa/aAa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168957	32168957	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1346	460	1079	0	ENST00000375023.3:c.4076A>G	p.Tyr1359Cys	p.Y1359C	ENST00000375023	NM_004557.3	1359	tAt/tGt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372226	55372228	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0012809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	419	574	0	ENST00000297316.4:c.921_923del	p.Gly308del	p.G308del	ENST00000297316	NM_022454.3	306	GGC/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0016705-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			816	86	855	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245891	5245891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016705-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			986	66	1109	0	ENST00000357368.4:c.884G>A	p.Arg295Gln	p.R295Q	ENST00000357368	NM_002850.3	295	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112174214	112174214	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016705-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			217	22	302	0	ENST00000257430.4:c.2926del	p.Arg976GlufsTer4	p.R976Efs*4	ENST00000257430	NM_000038.5	975	Aaa/aa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25466773	25466773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1431156021		P-0016705-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			640	35	598	0	ENST00000264709.3:c.1930G>A	p.Ala644Thr	p.A644T	ENST00000264709	NM_175629.2	644	Gct/Act																																																																															
RAD51	5888	MSKCC	GRCh37	15	41021819	41021819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016705-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			618	37	480	0	ENST00000267868.3:c.761G>A	p.Arg254Gln	p.R254Q	ENST00000267868	NM_002875.4	254	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0042857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	18	701	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	443	571	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533652	63533652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	137	605	0	ENST00000307078.5:c.1502G>A	p.Gly501Glu	p.G501E	ENST00000307078	NM_004655.3	501	gGg/gAg																																																																															
BBC3	27113	MSKCC	GRCh37	19	47725059	47725059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	147	743	0	ENST00000449228.1:c.685G>A	p.Gly229Ser	p.G229S	ENST00000449228	NM_001127240.2	229	Ggt/Agt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	230	750	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115736	8115737	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0043231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	44	497	0	ENST00000346208.3:c.1083_1084dup	p.Gln362ProfsTer43	p.Q362Pfs*43	ENST00000346208		361	atc/atCCc																																																																															
CDH1	999	MSKCC	GRCh37	16	68842647	68842647	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	116	695	0	ENST00000261769.5:c.583C>T	p.Gln195Ter	p.Q195*	ENST00000261769	NM_004360.3	195	Caa/Taa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264348	46264348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	104	444	0	ENST00000371998.3:c.1395C>A	p.Ser465Arg	p.S465R	ENST00000371998		465	agC/agA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	717	1121	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37646949	37646949	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	339	827	1	ENST00000447079.4:c.2071A>G	p.Ile691Val	p.I691V	ENST00000447079	NM_015083.1	691	Atc/Gtc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62326258	62326258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	400	1195	0	ENST00000508582.2:c.3346C>T	p.Leu1116Phe	p.L1116F	ENST00000508582		1116	Ctc/Ttc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1920102	1920102	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0043597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	58	1071	0	ENST00000382895.3:c.1162A>T	p.Lys388Ter	p.K388*	ENST00000382895	NM_133330.2	388	Aag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0045260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1175	163	609	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0045260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	232	316	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			521	460	679	1	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115251182	115251182	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	90	372	0	ENST00000369535.4:c.544A>T	p.Met182Leu	p.M182L	ENST00000369535	NM_002524.4	182	Atg/Ttg																																																																															
TET1	80312	MSKCC	GRCh37	10	70426860	70426860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			353	84	301	0	ENST00000373644.4:c.4520G>T	p.Gly1507Val	p.G1507V	ENST00000373644	NM_030625.2	1507	gGc/gTc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375310	15375310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			714	222	607	0	ENST00000263377.2:c.1117G>A	p.Ala373Thr	p.A373T	ENST00000263377	NM_058243.2	373	Gcc/Acc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680043	30680043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			728	173	512	0	ENST00000376406.3:c.1676C>T	p.Pro559Leu	p.P559L	ENST00000376406	NM_014641.2	559	cCa/cTa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101904851	101904851	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0045260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			200	89	260	0	ENST00000374994.4:c.839C>G	p.Ser280Ter	p.S280*	ENST00000374994	NM_004612.2	280	tCa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	38	518	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	27	566	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0045379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	40	711	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038526	47038526	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	45	1206	0	ENST00000329236.7:c.457C>T	p.Arg153Ter	p.R153*	ENST00000329236	NM_001204466.1	153	Cga/Tga																																																																															
MPL	4352	MSKCC	GRCh37	1	43814571	43814571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	42	973	0	ENST00000372470.3:c.1366C>T	p.Arg456Cys	p.R456C	ENST00000372470	NM_005373.2	456	Cgc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0045433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	59	359	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0045433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	83	571	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0045433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	252	863	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874036	151874036	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs138845109		P-0045433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	104	469	0	ENST00000262189.6:c.8502A>T	p.Glu2834Asp	p.E2834D	ENST00000262189	NM_170606.2	2834	gaA/gaT																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121541	2121541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	252	1008	0	ENST00000219476.3:c.1870G>A	p.Asp624Asn	p.D624N	ENST00000219476	NM_000548.3	624	Gac/Aac																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66520194	66520194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	92	380	0	ENST00000358598.2:c.478G>T	p.Ala160Ser	p.A160S	ENST00000358598	NM_212471.2	160	Gca/Tca																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031939	26031939	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	44	452	0	ENST00000244661.2:c.350G>C	p.Arg117Pro	p.R117P	ENST00000244661	NM_003537.3	117	cGa/cCa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0045434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	97	232	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0045434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	208	378	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733279	40733279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201275244		P-0045434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	328	520	0	ENST00000373198.4:c.3527G>A	p.Arg1176His	p.R1176H	ENST00000373198	NM_133170.3	1176	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175193	112175193	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	91	207	0	ENST00000257430.4:c.3904delC	p.Leu1302CysfsTer3	p.L1302Cfs*3	ENST00000257430	NM_000038.5	1301	aCc/ac																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846216	156846216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	154	883	1	ENST00000524377.1:c.1657G>A	p.Ala553Thr	p.A553T	ENST00000524377	NM_002529.3	553	Gct/Act																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114905819	114905820	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0045434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	194	586	0	ENST00000543371.1:c.839dup	p.Tyr280Ter	p.Y280*	ENST00000543371	NM_001198531.1	280	tac/tAac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579560	7579563	+	frameshift_variant	Frame_Shift_Del	DEL	AATC	AATC	-			P-0045434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	249	826	0	ENST00000269305.4:c.124_127del	p.Asp42Ter	p.D42*	ENST00000269305	NM_001126112.2	42	GATTtg/tg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957020	1957020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1187	69	711	0	ENST00000382891.5:c.2471G>A	p.Arg824Gln	p.R824Q	ENST00000382891	NM_133335.3	824	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0045436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	112	709	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0045444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	143	535	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68835596	68835596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	166	418	1	ENST00000261769.5:c.187C>T	p.Arg63Ter	p.R63*	ENST00000261769	NM_004360.3	63	Cga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199627	16199627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	43	397	0	ENST00000375759.3:c.400G>A	p.Asp134Asn	p.D134N	ENST00000375759	NM_015001.2	134	Gat/Aat																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004348	150004348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	79	369	0	ENST00000253339.5:c.1877G>A	p.Arg626Gln	p.R626Q	ENST00000253339		626	cGa/cAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307328	118307328	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	13	16	0	ENST00000534358.1:c.101G>T	p.Arg34Leu	p.R34L	ENST00000534358	NM_005933.3	34	cGc/cTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427975	49427975	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	242	669	0	ENST00000301067.7:c.10615C>G	p.Arg3539Gly	p.R3539G	ENST00000301067	NM_003482.3	3539	Cgg/Ggg																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152864448	152864448	+	synonymous_variant	Silent	SNP	G	G	A			P-0045444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	79	131	0	ENST00000406277.2:c.78C>T	p.Phe26=	p.F26=	ENST00000406277	NM_152274.4	26	ttC/ttT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	21	347	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0045451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	99	995	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0045451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	17	270	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456365	32456365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	238	646	1	ENST00000332351.3:c.527G>T	p.Arg176Leu	p.R176L	ENST00000332351	NM_024426.4	176	cGc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	180	500	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577594	7577595	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CAGT			P-0045290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	188	640	0	ENST00000269305.4:c.683_686dup	p.Cys229Ter	p.C229*	ENST00000269305	NM_001126112.2	229	tgt/tgACTGt																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793338	242793338	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	237	951	0	ENST00000334409.5:c.739G>T	p.Glu247Ter	p.E247*	ENST00000334409	NM_005018.2	247	Gag/Tag																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665260	138665260	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	38	750	0	ENST00000330315.3:c.305del	p.Ile102ThrfsTer48	p.I102Tfs*48	ENST00000330315	NM_023067.3	102	aTc/ac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971123	21971129	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGAGT	TGAGAGT	-			P-0045290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	232	456	0	ENST00000304494.5:c.229_235del	p.Thr77ProfsTer67	p.T77Pfs*67	ENST00000304494	NM_000077.4	77	ACTCTCAcc/cc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0045291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	19	588	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931588		P-0045291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	18	386	2	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																															
MED12	9968	MSKCC	GRCh37	X	70351422	70351422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	86	377	0	ENST00000374080.3:c.4070G>A	p.Arg1357His	p.R1357H	ENST00000374080		1357	cGc/cAc																																																																															
IRF4	3662	MSKCC	GRCh37	6	393211	393211	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	37	497	0	ENST00000380956.4:c.59G>T	p.Gly20Val	p.G20V	ENST00000380956	NM_001195286.1	20	gGc/gTc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2185914	2185915	+	inframe_insertion	In_Frame_Ins	INS	-	-	TAT			P-0045291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	33	574	0	ENST00000398665.3:c.187_189dup	p.Tyr63dup	p.Y63dup	ENST00000398665	NM_032482.2	63	-/TAT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919327	178919327	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0045291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	14	187	0	ENST00000263967.3:c.812A>G	p.Lys271Arg	p.K271R	ENST00000263967	NM_006218.2	271	aAg/aGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0045292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	203	510	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577334	64577334	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	298	662	0	ENST00000337652.1:c.248del	p.Leu83ArgfsTer36	p.L83Rfs*36	ENST00000337652	NM_130803.2	83	cTg/cg																																																																															
TP63	8626	MSKCC	GRCh37	3	189612142	189612142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	279	647	0	ENST00000264731.3:c.1894G>A	p.Glu632Lys	p.E632K	ENST00000264731	NM_003722.4	632	Gag/Aag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121811	2121811	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	258	577	0	ENST00000219476.3:c.1973A>C	p.Lys658Thr	p.K658T	ENST00000219476	NM_000548.3	658	aAg/aCg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711969	89711969	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	63	408	0	ENST00000371953.3:c.587A>T	p.His196Leu	p.H196L	ENST00000371953	NM_000314.4	196	cAc/cTc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109765	115109765	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	200	644	0	ENST00000257566.3:c.2113T>C	p.Ser705Pro	p.S705P	ENST00000257566	NM_016569.3	705	Tcc/Ccc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472513	88472513	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	203	690	3	ENST00000360948.2:c.2042C>A	p.Ala681Asp	p.A681D	ENST00000360948	NM_001012338.2	681	gCc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576843	7576854	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACTTAGTACCT	GACTTAGTACCT	-			P-0045292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	211	552	0	ENST00000269305.4:c.992_993+10del		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
NF1	4763	MSKCC	GRCh37	17	29546029	29546029	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0045292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	209	431	0	ENST00000358273.4:c.1534A>T	p.Arg512Ter	p.R512*	ENST00000358273	NM_001042492.2	512	Aga/Tga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290236	15290236	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs112197217		P-0045292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	383	798	0	ENST00000263388.2:c.3399C>G	p.His1133Gln	p.H1133Q	ENST00000263388	NM_000435.2	1133	caC/caG																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508270	106508270	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	203	424	1	ENST00000359195.3:c.264C>A	p.Tyr88Ter	p.Y88*	ENST00000359195	NM_002649.2	88	taC/taA																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129169	64129169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	103	826	1	ENST00000334205.4:c.707C>T	p.Ser236Leu	p.S236L	ENST00000334205	NM_003942.2	236	tCg/tTg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193094273	193094273	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	58	325	0	ENST00000367435.3:c.163T>A	p.Tyr55Asn	p.Y55N	ENST00000367435	NM_024529.4	55	Tac/Aac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827602	72827602	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	62	556	0	ENST00000268489.5:c.8979G>A	p.Trp2993Ter	p.W2993*	ENST00000268489	NM_006885.3	2993	tgG/tgA																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618822	37618825	+	frameshift_variant	Frame_Shift_Del	DEL	AGCC	AGCC	-			P-0045142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	328	500	0	ENST00000447079.4:c.499_502del	p.Ala167LysfsTer23	p.A167Kfs*23	ENST00000447079	NM_015083.1	166	gtAGCC/gt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619240	37619240	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	179	457	0	ENST00000447079.4:c.916del	p.Ser306AlafsTer32	p.S306Afs*32	ENST00000447079	NM_015083.1	306	Agc/gc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859288	151859288	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	35	246	0	ENST00000262189.6:c.11374C>T	p.Gln3792Ter	p.Q3792*	ENST00000262189	NM_170606.2	3792	Caa/Taa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061227	38061242	+	protein_altering_variant	In_Frame_Del	DEL	GAACATGTTGCCGGAG	GAACATGTTGCCGGAG	C			P-0045142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	82	698	0	ENST00000250448.2:c.747_762delinsG	p.Asp249_Phe254delinsGlu	p.D249_F254delinsE	ENST00000250448	NM_004496.3	249	gaCTCCGGCAACATGTTC/gaG																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347985	89347986	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0045213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	68	973	0	ENST00000301030.4:c.4964_4965del	p.Lys1655ArgfsTer12	p.K1655Rfs*12	ENST00000301030	NM_001256183.1	1655	aAA/a																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591118	67591135	+	inframe_deletion	In_Frame_Del	DEL	ATCCAGCTGAGAAAGACG	ATCCAGCTGAGAAAGACG	-			P-0045213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	17	286	0	ENST00000274335.5:c.1712_1729del	p.Ile571_Thr576del	p.I571_T576del	ENST00000274335		571	ATCCAGCTGAGAAAGACG/-																																																																															
ABL1	25	MSKCC	GRCh37	9	133760753	133760753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	97	878	2	ENST00000318560.5:c.3076G>A	p.Ala1026Thr	p.A1026T	ENST00000318560	NM_005157.4	1026	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0045218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	415	787	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	59	255	1	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11300489	11300489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	140	893	0	ENST00000361445.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000361445	NM_004958.3	553	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0045218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	66	339	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948799	71948799	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1254	269	1037	1	ENST00000298229.2:c.3514del	p.Arg1172AlafsTer30	p.R1172Afs*30	ENST00000298229	NM_001567.3	1171	Ccc/cc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100093	157100117	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCGGCGGCGGCAGCAGCAGGAG	GCGGCGGCGGCGGCAGCAGCAGGAG	-			P-0045218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	24	31	0	ENST00000346085.5:c.1044_1068del	p.Ala350MetfsTer11	p.A350Mfs*11	ENST00000346085	NM_020732.3	344	GCGGCGGCGGCGGCAGCAGCAGGAGgc/gc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981981	70981981	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1693	452	1096	1	ENST00000276594.2:c.115T>C	p.Tyr39His	p.Y39H	ENST00000276594	NM_024504.3	39	Tac/Cac																																																																															
SDHC	6391	MSKCC	GRCh37	1	161298205	161298205	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	53	459	1	ENST00000367975.2:c.97A>G	p.Thr33Ala	p.T33A	ENST00000367975	NM_003001.3	33	Acg/Gcg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999279	100999279	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	187	869	0	ENST00000325455.5:c.523A>C	p.Ser175Arg	p.S175R	ENST00000325455	NM_001202474.3	175	Agc/Cgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	175	368	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28611370	28611370	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	76	486	0	ENST00000241453.7:c.1261G>T	p.Glu421Ter	p.E421*	ENST00000241453	NM_004119.2	421	Gaa/Taa																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130390	29130390	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	70	433	0	ENST00000328354.6:c.319+1G>T		p.X107_splice	ENST00000328354	NM_007194.3	107																																																																																
MST1R	4486	MSKCC	GRCh37	3	49936017	49936017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	87	834	0	ENST00000296474.3:c.1653G>T	p.Met551Ile	p.M551I	ENST00000296474	NM_002447.2	551	atG/atT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356236	66356236	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	169	523	0	ENST00000273854.3:c.1261C>A	p.Leu421Met	p.L421M	ENST00000273854	NM_004439.5	421	Ctg/Atg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519707	176519707	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	108	700	0	ENST00000292408.4:c.979G>C	p.Asp327His	p.D327H	ENST00000292408	NM_213647.1	327	Gac/Cac																																																																															
FLT4	2324	MSKCC	GRCh37	5	180050998	180050998	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	150	831	0	ENST00000261937.6:c.1485G>T	p.Gln495His	p.Q495H	ENST00000261937	NM_182925.4	495	caG/caT																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158689	26158689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	17	130	0	ENST00000289316.2:c.292G>T	p.Ala98Ser	p.A98S	ENST00000289316	NM_138720.2	98	Gcc/Tcc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32171979	32171979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	53	543	0	ENST00000375023.3:c.3053C>T	p.Thr1018Ile	p.T1018I	ENST00000375023	NM_004557.3	1018	aCa/aTa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045187	47045187	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	154	585	0	ENST00000329236.7:c.2194G>T	p.Glu732Ter	p.E732*	ENST00000329236	NM_001204466.1	732	Gag/Tag																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	114	563	7	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	191	483	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	111	330	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	215	354	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495023	56495023	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs2271188		P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	613	656	1	ENST00000267101.3:c.3380G>A	p.Arg1127His	p.R1127H	ENST00000267101	NM_001982.3	1127	cGc/cAc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	258	742	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	56	164	0	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	190	609	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
APC	324	MSKCC	GRCh37	5	112136980	112136980	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	112	353	0	ENST00000257430.4:c.734C>A	p.Ser245Ter	p.S245*	ENST00000257430	NM_000038.5	245	tCa/tAa																																																																															
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	116	321	1	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	190	429	13	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	370	457	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	185	665	3	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255142	16255143	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	169	433	4	ENST00000375759.3:c.2417_2418delGA	p.Arg806ThrfsTer14	p.R806Tfs*14	ENST00000375759	NM_015001.2	803	GAg/g																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	286	379	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	144	383	2	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864148	57864148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	460	606	0	ENST00000228682.2:c.1625G>A	p.Arg542His	p.R542H	ENST00000228682	NM_005269.2	542	cGc/cAc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661663	227661664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761880048		P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	205	664	14	ENST00000305123.5:c.1791dup	p.His598AlafsTer13	p.H598Afs*13	ENST00000305123	NM_005544.2	597	-/G																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821638	72821638	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200561133		P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	16	87	0	ENST00000268489.5:c.10537A>G	p.Ser3513Gly	p.S3513G	ENST00000268489	NM_006885.3	3513	Agt/Ggt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753011	57753012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	129	346	5	ENST00000274289.3:c.1004dupT	p.Leu335PhefsTer12	p.L335Ffs*12	ENST00000274289	NM_006622.3	335	ttg/ttTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346157	89346158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	116	330	0	ENST00000301030.4:c.6792dup	p.Ala2265ArgfsTer8	p.A2265Rfs*8	ENST00000301030	NM_001256183.1	2264	-/C																																																																															
APC	324	MSKCC	GRCh37	5	112175969	112175970	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	94	255	0	ENST00000257430.4:c.4682dupA	p.Asp1562GlyfsTer5	p.D1562Gfs*5	ENST00000257430	NM_000038.5	1560	gaa/gAaa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67646013	67646014	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	160	431	6	ENST00000264010.4:c.950_951delCA	p.Thr317ArgfsTer91	p.T317Rfs*91	ENST00000264010	NM_006565.3	314	aAC/a																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793253	33793253	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	75	139	0	ENST00000498907.2:c.68delC	p.Pro23ArgfsTer137	p.P23Rfs*137	ENST00000498907	NM_004364.3	23	cCg/cg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	521	582	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936083	178936083	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	198	580	0	ENST00000263967.3:c.1625A>G	p.Glu542Gly	p.E542G	ENST00000263967	NM_006218.2	542	gAa/gGa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748660	43748661	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	275	863	2	ENST00000382044.4:c.2145dup	p.Glu716ArgfsTer9	p.E716Rfs*9	ENST00000382044	NM_001141980.1	715	-/A																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519504	137519505	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	147	319	0	ENST00000367739.4:c.1132_1133dupAG	p.Ser378ArgfsTer6	p.S378Rfs*6	ENST00000367739	NM_000416.2	378	agt/agAGt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323315	31323315	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	112	439	0	ENST00000412585.2:c.674T>C	p.Leu225Pro	p.L225P	ENST00000412585	NM_005514.6	225	cTg/cCg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026709	6026709	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	332	765	0	ENST00000265849.7:c.1687C>T	p.Arg563Ter	p.R563*	ENST00000265849	NM_000535.5	563	Cga/Tga																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800429	32800429	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750440758		P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	420	940	4	ENST00000374899.4:c.1118G>A	p.Arg373His	p.R373H	ENST00000374899	NM_018833.2	373	cGc/cAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972449	32972449	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	236	554	0	ENST00000380152.3:c.9799A>G	p.Lys3267Glu	p.K3267E	ENST00000380152		3267	Aag/Gag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991847	72991847	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	253	697	0	ENST00000268489.5:c.2198A>G	p.Tyr733Cys	p.Y733C	ENST00000268489	NM_006885.3	733	tAc/tGc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10254644	10254644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148038464		P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	168	498	0	ENST00000340748.4:c.2866G>A	p.Val956Met	p.V956M	ENST00000340748		956	Gtg/Atg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11032293	11032293	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	213	603	0	ENST00000327064.4:c.1687T>C	p.Ser563Pro	p.S563P	ENST00000327064	NM_199141.1	563	Tcc/Ccc																																																																															
NF2	4771	MSKCC	GRCh37	22	30070926	30070926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	204	573	1	ENST00000338641.4:c.1442A>G	p.Tyr481Cys	p.Y481C	ENST00000338641	NM_000268.3	481	tAc/tGc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280778	41280778	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	57	465	0	ENST00000349496.5:c.2291A>C	p.Asp764Ala	p.D764A	ENST00000349496	NM_001904.3	764	gAt/gCt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430208	181430208	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	117	417	0	ENST00000325404.1:c.60del	p.Gly21AlafsTer25	p.G21Afs*25	ENST00000325404	NM_003106.3	20	ggC/gg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31409260	31409260	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	160	446	0	ENST00000344624.3:c.3757A>G	p.Ile1253Val	p.I1253V	ENST00000344624		1253	Att/Gtt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31421429	31421429	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	162	463	1	ENST00000344624.3:c.3475A>C	p.Thr1159Pro	p.T1159P	ENST00000344624		1159	Aca/Cca																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176145127	176145127	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043504-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			192	38	387	0	ENST00000367669.3:c.484C>T	p.Gln162Ter	p.Q162*	ENST00000367669	NM_022457.5	162	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0043504-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			695	157	580	0	ENST00000269305.4:c.672+1G>C		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
INSR	3643	MSKCC	GRCh37	19	7184361	7184361	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043504-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			852	144	554	0	ENST00000302850.5:c.940G>C	p.Glu314Gln	p.E314Q	ENST00000302850	NM_000208.2	314	Gag/Cag																																																																															
EP300	2033	MSKCC	GRCh37	22	41551100	41551100	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043504-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			598	133	475	0	ENST00000263253.7:c.3244C>G	p.Gln1082Glu	p.Q1082E	ENST00000263253	NM_001429.3	1082	Cag/Gag																																																																															
EP300	2033	MSKCC	GRCh37	22	41553348	41553348	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043504-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	60	525	0	ENST00000263253.7:c.3437C>G	p.Ser1146Cys	p.S1146C	ENST00000263253	NM_001429.3	1146	tCt/tGt																																																																															
EP300	2033	MSKCC	GRCh37	22	41553371	41553371	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043504-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			361	62	462	0	ENST00000263253.7:c.3460G>C	p.Asp1154His	p.D1154H	ENST00000263253	NM_001429.3	1154	Gac/Cac																																																																															
EP300	2033	MSKCC	GRCh37	22	41554462	41554462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043504-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			608	82	431	0	ENST00000263253.7:c.3548G>A	p.Cys1183Tyr	p.C1183Y	ENST00000263253	NM_001429.3	1183	tGc/tAc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170002367	170002367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043504-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			185	29	212	0	ENST00000295797.4:c.1186G>A	p.Asp396Asn	p.D396N	ENST00000295797	NM_002740.5	396	Gac/Aac																																																																															
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043504-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			184	34	375	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412506	63412506	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043504-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			698	148	538	0	ENST00000330258.3:c.661T>A	p.Phe221Ile	p.F221I	ENST00000330258	NM_152424.3	221	Ttc/Atc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174416	11174416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	100	629	0	ENST00000361445.4:c.7259C>T	p.Ala2420Val	p.A2420V	ENST00000361445	NM_004958.3	2420	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578371	7578371	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs776167460		P-0044365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	16	578	2	ENST00000269305.4:c.559G>A	p.Gly187Ser	p.G187S	ENST00000269305	NM_001126112.2	187	Ggt/Agt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26022338	26022341	+	frameshift_variant	Frame_Shift_Del	DEL	CTGA	CTGA	-			P-0044365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	30	389	0	ENST00000435504.4:c.316_319del	p.Ser106IlefsTer60	p.S106Ifs*60	ENST00000435504		106	TCAGat/at																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249013	55249014	+	protein_altering_variant	In_Frame_Ins	INS	AA	AA	GGGTT			P-0044365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	99	595	0	ENST00000275493.2:c.2311_2312delinsGGGTT	p.Asn771delinsGlyPhe	p.N771delinsGF	ENST00000275493	NM_005228.3	771	AAc/GGGTTc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914137	32914137	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	105	471	0	ENST00000380152.3:c.5645C>A	p.Ser1882Ter	p.S1882*	ENST00000380152		1882	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0044410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	186	612	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
STK11	6794	MSKCC	GRCh37	19	1221961	1221961	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0044410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	143	853	0	ENST00000326873.7:c.876C>G	p.Tyr292Ter	p.Y292*	ENST00000326873	NM_000455.4	292	taC/taG																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865112	57865112	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	124	1028	0	ENST00000228682.2:c.2592del	p.Tyr865IlefsTer81	p.Y865Ifs*81	ENST00000228682	NM_005269.2	863	ggC/gg																																																																															
SRC	6714	MSKCC	GRCh37	20	36030035	36030035	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	51	864	0	ENST00000358208.4:c.1070C>G	p.Thr357Arg	p.T357R	ENST00000358208		357	aCa/aGa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149509508	149509508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	104	692	0	ENST00000261799.4:c.1391C>A	p.Thr464Lys	p.T464K	ENST00000261799	NM_002609.3	464	aCg/aAg																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402707	20402707	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	41	459	0	ENST00000346618.3:c.244G>C	p.Gly82Arg	p.G82R	ENST00000346618	NM_001949.4	82	Ggc/Cgc																																																																															
PARK2	5071	MSKCC	GRCh37	6	161781234	161781256	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGCCTGGGGAAACAAAGAGGAA	AGGCCTGGGGAAACAAAGAGGAA	-			P-0044410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	50	490	0	ENST00000366898.1:c.1168-19_1171del		p.X390_splice	ENST00000366898	NM_004562.2	390																																																																																
BAP1	8314	MSKCC	GRCh37	3	52436817	52436820	+	protein_altering_variant	In_Frame_Del	DEL	ACCT	ACCT	G			P-0044410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	82	753	0	ENST00000460680.1:c.1958_1961delinsC	p.Glu653_Val654delinsAla	p.E653_V654delinsA	ENST00000460680	NM_004656.3	653	gAGGTa/gCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	41	590	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	174	395	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	127	373	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
CASP8	841	MSKCC	GRCh37	2	202151289	202151290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	180	444	0	ENST00000358485.4:c.1596dupA	p.Leu533ThrfsTer6	p.L533Tfs*6	ENST00000358485	NM_001080125.1	530	aga/agAa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070349	37070349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1220422495		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	189	502	3	ENST00000231790.2:c.1489del	p.Arg497GlyfsTer11	p.R497Gfs*11	ENST00000231790	NM_000249.3	495	aCc/ac																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	179	472	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	262	568	1	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
CDH1	999	MSKCC	GRCh37	16	68849514	68849514	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs36087757		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	55	658	0	ENST00000261769.5:c.1417G>A	p.Val473Ile	p.V473I	ENST00000261769	NM_004360.3	473	Gtc/Atc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	284	617	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069060	5069060	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	106	402	0	ENST00000381652.3:c.1370del	p.Asn457MetfsTer22	p.N457Mfs*22	ENST00000381652	NM_004972.3	455	acA/ac																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63760023	63760023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	34	429	0	ENST00000279873.7:c.676C>T	p.Arg226Trp	p.R226W	ENST00000279873	NM_032199.2	226	Cgg/Tgg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	73	787	1	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829283	72829283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	278	756	1	ENST00000268489.5:c.7298C>T	p.Ala2433Val	p.A2433V	ENST00000268489	NM_006885.3	2433	gCg/gTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	54	128	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143043366	143043366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199940140		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	123	456	0	ENST00000262992.4:c.2050G>A	p.Val684Ile	p.V684I	ENST00000262992	NM_001101669.1	684	Gtt/Att																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489486	40489486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	293	622	0	ENST00000264657.5:c.764C>T	p.Pro255Leu	p.P255L	ENST00000264657	NM_139276.2	255	cCg/cTg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279860	46279861	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAA	rs753491875		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	29	493	0	ENST00000371998.3:c.3788_3789insACA	p.Gln1276dup	p.Q1276dup	ENST00000371998		1276	-/CAA																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520087	106520087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	67	305	0	ENST00000359195.3:c.2515C>T	p.Arg839Cys	p.R839C	ENST00000359195	NM_002649.2	839	Cgc/Tgc																																																																															
CDH1	999	MSKCC	GRCh37	16	68867370	68867370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	265	510	0	ENST00000261769.5:c.2617G>A	p.Ala873Thr	p.A873T	ENST00000261769	NM_004360.3	873	Gct/Act																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435168	56435168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	340	748	3	ENST00000407977.2:c.1969C>T	p.Arg657Trp	p.R657W	ENST00000407977		657	Cgg/Tgg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803111	1803111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	354	704	4	ENST00000260795.2:c.463C>T	p.Arg155Trp	p.R155W	ENST00000260795		155	Cgg/Tgg																																																																															
CD276	80381	MSKCC	GRCh37	15	73996200	73996200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	244	510	0	ENST00000318443.5:c.934G>A	p.Ala312Thr	p.A312T	ENST00000318443	NM_001024736.1	312	Gcc/Acc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564680	86564680	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	299	720	0	ENST00000274376.6:c.416delC	p.Pro139LeufsTer35	p.P139Lfs*35	ENST00000274376	NM_002890.2	138	Ccc/cc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966873	25966873	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	238	609	4	ENST00000435504.4:c.2333del	p.Pro778GlnfsTer21	p.P778Qfs*21	ENST00000435504		778	cCa/ca																																																																															
FYN	2534	MSKCC	GRCh37	6	112020818	112020819	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	225	482	0	ENST00000368678.4:c.752dupC	p.Gln252ThrfsTer7	p.Q252Tfs*7	ENST00000368678		251	cca/ccCa																																																																															
ABL1	25	MSKCC	GRCh37	9	133759781	133759783	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	249	655	0	ENST00000318560.5:c.2111_2113del	p.Glu704del	p.E704del	ENST00000318560	NM_005157.4	702	GAG/-																																																																															
ATRX	546	MSKCC	GRCh37	X	76937603	76937603	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	59	409	1	ENST00000373344.5:c.3145del	p.Ile1049Ter	p.I1049*	ENST00000373344	NM_000489.3	1049	Ata/ta																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	302	780	2	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	228	636	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
B2M	567	MSKCC	GRCh37	15	45007794	45007797	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	80	495	0	ENST00000558401.1:c.244_247del	p.Phe82IlefsTer20	p.F82Ifs*20	ENST00000558401	NM_004048.2	81	TCTTtc/tc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	62	651	1	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589576	67589576	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1289537429		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	68	302	0	ENST00000274335.5:c.1344del	p.Lys448AsnfsTer32	p.K448Nfs*32	ENST00000274335		447	Aaa/aa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	76	523	10	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980558	1980559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs752037034		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	282	698	21	ENST00000382891.5:c.4028dup	p.Glu1344ArgfsTer91	p.E1344Rfs*91	ENST00000382891	NM_133335.3	1340	-/C																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412124	63412124	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	390	963	0	ENST00000330258.3:c.1043del	p.Gly348AlafsTer16	p.G348Afs*16	ENST00000330258	NM_152424.3	348	gGc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578480	7578480	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	449	767	7	ENST00000269305.4:c.450del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	150	acA/ac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	248	623	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738829	145738829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1198	110	815	0	ENST00000428558.2:c.2236G>A	p.Ala746Thr	p.A746T	ENST00000428558	NM_004260.3	746	Gcg/Acg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426093	47426094	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	261	778	2	ENST00000377045.4:c.619dup	p.Leu207ProfsTer36	p.L207Pfs*36	ENST00000377045	NM_001654.4	205	gcc/gCcc																																																																															
ATR	545	MSKCC	GRCh37	3	142274740	142274741	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	94	399	1	ENST00000350721.4:c.2319_2320delAA	p.Lys773AsnfsTer3	p.K773Nfs*3	ENST00000350721	NM_001184.3	773	aaAAta/aata																																																																															
BCL6	604	MSKCC	GRCh37	3	187447334	187447335	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	306	667	0	ENST00000232014.4:c.858dup	p.Ser287LeufsTer11	p.S287Lfs*11	ENST00000232014	NM_001130845.1	286	-/C																																																																															
TP53	7157	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	287	649	0	ENST00000269305.4:c.559+2T>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
SETD2	29072	MSKCC	GRCh37	3	47162704	47162704	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142723093		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	131	472	0	ENST00000409792.3:c.3422C>T	p.Pro1141Leu	p.P1141L	ENST00000409792	NM_014159.6	1141	cCg/cTg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46740268	46740268	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs28363243		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	259	528	0	ENST00000371975.4:c.1748T>C	p.Ile583Thr	p.I583T	ENST00000371975	NM_003579.3	583	aTt/aCt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434561	49434562	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	275	704	2	ENST00000301067.7:c.6991dup	p.Leu2331ProfsTer46	p.L2331Pfs*46	ENST00000301067	NM_003482.3	2331	ctg/cCtg																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374711	149374711	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	213	589	0	ENST00000360632.3:c.383del	p.Pro128ArgfsTer5	p.P128Rfs*5	ENST00000360632	NM_015472.4	128	cCg/cg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467987	50467987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	275	561	0	ENST00000331340.3:c.1222C>T	p.Arg408Cys	p.R408C	ENST00000331340	NM_006060.4	408	Cgc/Tgc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022880	12022880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	355	710	0	ENST00000396373.4:c.986C>T	p.Ala329Val	p.A329V	ENST00000396373	NM_001987.4	329	gCc/gTc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264377	46264378	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	181	458	0	ENST00000371998.3:c.1427dup	p.Asn476LysfsTer11	p.N476Kfs*11	ENST00000371998		475	cca/ccAa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944151	81944151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	268	652	0	ENST00000359376.3:c.1760G>A	p.Arg587Gln	p.R587Q	ENST00000359376	NM_002661.3	587	cGg/cAg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987066	36987066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	293	604	1	ENST00000354822.5:c.623G>A	p.Arg208Gln	p.R208Q	ENST00000354822	NM_001079668.2	208	cGa/cAa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874550	35874550	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	180	500	0	ENST00000303115.3:c.707-1G>A		p.X236_splice	ENST00000303115	NM_002185.3	236																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10599937	10599937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	430	668	2	ENST00000171111.5:c.1639G>A	p.Val547Ile	p.V547I	ENST00000171111	NM_203500.1	547	Gta/Ata																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981438	70981438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	385	842	0	ENST00000276594.2:c.658C>A	p.His220Asn	p.H220N	ENST00000276594	NM_024504.3	220	Cac/Aac																																																																															
KDM5A	5927	MSKCC	GRCh37	12	404813	404813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	244	601	0	ENST00000399788.2:c.4381G>A	p.Glu1461Lys	p.E1461K	ENST00000399788	NM_001042603.1	1461	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1294672	1294672	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	192	374	0	ENST00000310581.5:c.329del	p.Gly110AlafsTer18	p.G110Afs*18	ENST00000310581	NM_198253.2	110	gGc/gc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11210190	11210190	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	50	525	0	ENST00000361445.4:c.4563G>T	p.Trp1521Cys	p.W1521C	ENST00000361445	NM_004958.3	1521	tgG/tgT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101515	27101516	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	409	781	0	ENST00000324856.7:c.4800_4801del	p.Pro1601Ter	p.P1601*	ENST00000324856	NM_006015.4	1599	acCTct/acct																																																																															
JAK1	3716	MSKCC	GRCh37	1	65309777	65309777	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	300	583	0	ENST00000342505.4:c.2373G>T	p.Glu791Asp	p.E791D	ENST00000342505	NM_002227.2	791	gaG/gaT																																																																															
JAK1	3716	MSKCC	GRCh37	1	65312411	65312413	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	217	538	0	ENST00000342505.4:c.1906_1908del	p.Phe636del	p.F636del	ENST00000342505	NM_002227.2	636	TTC/-																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115282416	115282416	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	181	572	0	ENST00000438362.2:c.234del	p.Lys78AsnfsTer3	p.K78Nfs*3	ENST00000438362	NM_001242891.1	78	aaA/aa																																																																															
TET1	80312	MSKCC	GRCh37	10	70333316	70333316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	360	756	1	ENST00000373644.4:c.1221G>T	p.Glu407Asp	p.E407D	ENST00000373644	NM_030625.2	407	gaG/gaT																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711974	89711974	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	103	385	1	ENST00000371953.3:c.592A>G	p.Met198Val	p.M198V	ENST00000371953	NM_000314.4	198	Atg/Gtg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633581	69633581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	98	155	0	ENST00000334134.2:c.121G>A	p.Gly41Arg	p.G41R	ENST00000334134	NM_005247.2	41	Ggg/Agg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71947023	71947024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	306	816	0	ENST00000298229.2:c.2877dup	p.Arg960GlnfsTer9	p.R960Qfs*9	ENST00000298229	NM_001567.3	958	acc/aCcc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307256	118307256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	126	193	0	ENST00000534358.1:c.29C>T	p.Pro10Leu	p.P10L	ENST00000534358	NM_005933.3	10	cCc/cTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307291	118307293	+	inframe_deletion	In_Frame_Del	DEL	GGG	GGG	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	12	58	0	ENST00000534358.1:c.67_69del	p.Gly23del	p.G23del	ENST00000534358	NM_005933.3	22	GGG/-																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118365442	118365442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	119	394	1	ENST00000534358.1:c.5327del	p.Lys1776SerfsTer47	p.K1776Sfs*47	ENST00000534358	NM_005933.3	1775	Aaa/aa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14016051	14016051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	19	280	1	ENST00000311895.7:c.371C>A	p.Pro124His	p.P124H	ENST00000311895	NM_005236.2	124	cCt/cAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993824	72993824	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	168	555	0	ENST00000268489.5:c.221C>A	p.Pro74His	p.P74H	ENST00000268489	NM_006885.3	74	cCc/cAc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89857898	89857904	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCTGG	CAGCTGG	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	325	636	0	ENST00000389301.3:c.1266_1272del	p.Cys422TrpfsTer102	p.C422Wfs*102	ENST00000389301	NM_000135.2	422	tgCCAGCTG/tg																																																																															
RARA	5914	MSKCC	GRCh37	17	38511582	38511582	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	336	736	0	ENST00000254066.5:c.1080G>T	p.Lys360Asn	p.K360N	ENST00000254066	NM_000964.3	360	aaG/aaT																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245803	41245803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	176	637	0	ENST00000357654.3:c.1745C>T	p.Thr582Met	p.T582M	ENST00000357654	NM_007294.3	582	aCg/aTg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78704382	78704382	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	218	477	0	ENST00000306801.3:c.530T>G	p.Leu177Arg	p.L177R	ENST00000306801	NM_020761.2	177	cTg/cGg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78919559	78919559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	267	504	0	ENST00000306801.3:c.3118G>A	p.Val1040Ile	p.V1040I	ENST00000306801	NM_020761.2	1040	Gta/Ata																																																																															
YES1	7525	MSKCC	GRCh37	18	746034	746034	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	55	478	0	ENST00000314574.4:c.488T>C	p.Met163Thr	p.M163T	ENST00000314574	NM_005433.3	163	aTg/aCg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5207934	5207934	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	307	632	1	ENST00000357368.4:c.5777A>G	p.Glu1926Gly	p.E1926G	ENST00000357368	NM_002850.3	1926	gAg/gGg																																																																															
AXL	558	MSKCC	GRCh37	19	41765647	41765647	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	387	753	2	ENST00000301178.4:c.2528del	p.Pro843GlnfsTer113	p.P843Qfs*113	ENST00000301178	NM_021913.4	841	gaC/ga																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967284	25967284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1338721842		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	240	522	0	ENST00000435504.4:c.1922G>A	p.Arg641His	p.R641H	ENST00000435504		641	cGt/cAt																																																																															
CASP8	841	MSKCC	GRCh37	2	202149569	202149570	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	195	424	0	ENST00000358485.4:c.1014dup	p.Glu339Ter	p.E339*	ENST00000358485	NM_001080125.1	337	cat/caTt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467529	66467529	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	156	406	0	ENST00000273854.3:c.740T>C	p.Ile247Thr	p.I247T	ENST00000273854	NM_004439.5	247	aTc/aCc																																																																															
APC	324	MSKCC	GRCh37	5	112164590	112164590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	133	295	0	ENST00000257430.4:c.1664C>T	p.Ala555Val	p.A555V	ENST00000257430	NM_000038.5	555	gCa/gTa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638434	176638434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	360	746	3	ENST00000439151.2:c.3034C>T	p.Arg1012Cys	p.R1012C	ENST00000439151	NM_022455.4	1012	Cgt/Tgt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32171977	32171977	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	297	543	0	ENST00000375023.3:c.3055G>T	p.Gly1019Cys	p.G1019C	ENST00000375023	NM_004557.3	1019	Ggc/Tgc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864416	162864416	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	272	533	2	ENST00000366898.1:c.97C>T	p.Arg33Ter	p.R33*	ENST00000366898	NM_004562.2	33	Cga/Tga																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739831	41739831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	233	552	0	ENST00000242208.4:c.142C>T	p.Pro48Ser	p.P48S	ENST00000242208	NM_002192.2	48	Ccc/Tcc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148543631	148543631	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	42	481	0	ENST00000320356.2:c.177A>T	p.Glu59Asp	p.E59D	ENST00000320356	NM_004456.4	59	gaA/gaT																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146034	38146034	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	402	714	0	ENST00000317025.8:c.3472G>T	p.Gly1158Cys	p.G1158C	ENST00000317025	NM_023034.1	1158	Ggc/Tgc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970904	21970904	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	364	612	0	ENST00000304494.5:c.454T>G	p.Ser152Ala	p.S152A	ENST00000304494	NM_000077.4	152	Tca/Gca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417382	139417382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	293	678	0	ENST00000277541.6:c.662C>T	p.Pro221Leu	p.P221L	ENST00000277541	NM_017617.3	221	cCc/cTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47004874	47004874	+	5_prime_UTR_variant	5'UTR	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	267	588	2	ENST00000329236.7:c.-136G>A		p.*46*	ENST00000329236	NM_001204466.1																																																																																	
ATRX	546	MSKCC	GRCh37	X	76918934	76918934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	243	652	1	ENST00000373344.5:c.4057G>A	p.Gly1353Arg	p.G1353R	ENST00000373344	NM_000489.3	1353	Gga/Aga																																																																															
STAG2	10735	MSKCC	GRCh37	X	123181270	123181270	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	42	392	1	ENST00000218089.9:c.734A>G	p.Gln245Arg	p.Q245R	ENST00000218089	NM_001042749.1	245	cAa/cGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	59	500	1	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs121913370		P-0045220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	33	235	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt																																																																															
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	21	303	1	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7578402	7578404	+	inframe_deletion	In_Frame_Del	DEL	GCA	GCA	-			P-0045220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	63	600	0	ENST00000269305.4:c.526_528del	p.Cys176del	p.C176del	ENST00000269305	NM_001126112.2	176	TGC/-																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845229	151845229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	31	413	0	ENST00000262189.6:c.13783C>T	p.Arg4595Cys	p.R4595C	ENST00000262189	NM_170606.2	4595	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0045263-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			632	94	615	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
STK11	6794	MSKCC	GRCh37	19	1220578	1220578	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0045263-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			539	108	760	1	ENST00000326873.7:c.598-2A>T		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602910	10602910	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045263-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			661	138	781	0	ENST00000171111.5:c.668T>G	p.Leu223Arg	p.L223R	ENST00000171111	NM_203500.1	223	cTg/cGg																																																																															
APC	324	MSKCC	GRCh37	5	112175100	112175101	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	10	246	0	ENST00000257430.4:c.3814dup	p.Ser1272PhefsTer4	p.S1272Ffs*4	ENST00000257430	NM_000038.5	1270	tgt/tgTt																																																																															
RAF1	5894	MSKCC	GRCh37	3	12627284	12627284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	12	463	1	ENST00000251849.4:c.1432G>A	p.Glu478Lys	p.E478K	ENST00000251849	NM_002880.3	478	Gaa/Aaa																																																																															
ATM	472	MSKCC	GRCh37	11	108218083	108218083	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	73	381	0	ENST00000278616.4:c.8662A>C	p.Ile2888Leu	p.I2888L	ENST00000278616	NM_000051.3	2888	Ata/Cta																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0045313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	250	812	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056181	27056181	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	112	712	0	ENST00000324856.7:c.1177C>T	p.Gln393Ter	p.Q393*	ENST00000324856	NM_006015.4	393	Cag/Tag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435151	18435151	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183245589		P-0045313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	33	477	0	ENST00000266497.5:c.136G>A	p.Glu46Lys	p.E46K	ENST00000266497		46	Gag/Aag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098884	178099449	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTTTTTTCTGTTTTTCCAGCTCATACTCTTTCCGTCGCTGACTGAAGTCAAATACTTCTCGACTTACTCCAAGATCTATATCTTGCCTCCAAAGTATGTCAATCAAATCCATGTCCTATGTTTAAGACAAAAAAAGGAAGGAGAGAGCTCATGTTTTTTAAATGACAGATACCACATAAATTAATTCACATTATGCCACTGTTGATGGTGGGAAGTGGGGAGATTACAAATACAATCTAAATGAGAACACAGATCCAATGTTCTAGAAGAGCACAGTTAATTCCATTCAATGAATCTATTCATTAAAGACAACAAACAACCTACAAACACATAGCCATCCATTCTAATCACTTGGATCATTAATGATAGGGTGATGGTAGAGGTCACTAAAGGGCAAAGTCACAAATGGTTTGAATGAGAAGAAATCCCACCCTTGTTTAATGGAATATAGAAATTAGAGCAAGCACTCTAAGCCACTGGCTTATATAAGAGAAGTGGGGTCTGGAAAACATTACTGAATACATGGAGTTTTCTTTAAACTTTGCTCAGCAAATATCCAGTTTAT	AGTTTTTTCTGTTTTTCCAGCTCATACTCTTTCCGTCGCTGACTGAAGTCAAATACTTCTCGACTTACTCCAAGATCTATATCTTGCCTCCAAAGTATGTCAATCAAATCCATGTCCTATGTTTAAGACAAAAAAAGGAAGGAGAGAGCTCATGTTTTTTAAATGACAGATACCACATAAATTAATTCACATTATGCCACTGTTGATGGTGGGAAGTGGGGAGATTACAAATACAATCTAAATGAGAACACAGATCCAATGTTCTAGAAGAGCACAGTTAATTCCATTCAATGAATCTATTCATTAAAGACAACAAACAACCTACAAACACATAGCCATCCATTCTAATCACTTGGATCATTAATGATAGGGTGATGGTAGAGGTCACTAAAGGGCAAAGTCACAAATGGTTTGAATGAGAAGAAATCCCACCCTTGTTTAATGGAATATAGAAATTAGAGCAAGCACTCTAAGCCACTGGCTTATATAAGAGAAGTGGGGTCTGGAAAACATTACTGAATACATGGAGTTTTCTTTAAACTTTGCTCAGCAAATATCCAGTTTAT	-			P-0045313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	134	650	0	ENST00000397062.3:c.46-450_161del		p.X16_splice	ENST00000397062	NM_006164.4	16																																																																																
TGFBR2	7048	MSKCC	GRCh37	3	30713864	30713864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	460	724	0	ENST00000359013.4:c.1264G>C	p.Asp422His	p.D422H	ENST00000359013	NM_001024847.2	422	Gac/Cac																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	16	672	2	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121791	2121792	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	10	718	0	ENST00000219476.3:c.1959_1960delAG	p.Gly654LeufsTer2	p.G654Lfs*2	ENST00000219476	NM_000548.3	651	ccAGag/ccag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15308383	15308383	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	24	684	1	ENST00000263388.2:c.125delC	p.Pro42LeufsTer194	p.P42Lfs*194	ENST00000263388	NM_000435.2	42	cCt/ct																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	53	411	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509127	66509127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145126637		P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	14	362	0	ENST00000273854.3:c.200G>A	p.Arg67His	p.R67H	ENST00000273854	NM_004439.5	67	cGc/cAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591132	67591134	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	29	369	0	ENST00000274335.5:c.1727_1729delCGA	p.Thr576del	p.T576del	ENST00000274335		575	aaGACg/aag																																																																															
NF1	4763	MSKCC	GRCh37	17	29579996	29579996	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	32	373	2	ENST00000358273.4:c.4157delA	p.Lys1386ArgfsTer20	p.K1386Rfs*20	ENST00000358273	NM_001042492.2	1384	gAa/ga																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508805	106508805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	10	585	0	ENST00000359195.3:c.799G>A	p.Glu267Lys	p.E267K	ENST00000359195	NM_002649.2	267	Gaa/Aaa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	33	715	3	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627501	37627501	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	21	536	1	ENST00000447079.4:c.1421delA	p.Asn474IlefsTer8	p.N474Ifs*8	ENST00000447079	NM_015083.1	472	gtA/gt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863319	57863319	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	24	779	1	ENST00000228682.2:c.1418del	p.Gly473AlafsTer40	p.G473Afs*40	ENST00000228682	NM_005269.2	472	Ggg/gg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52588798	52588798	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	27	688	1	ENST00000394830.3:c.4230del	p.Pro1411LeufsTer21	p.P1411Lfs*21	ENST00000394830	NM_018313.4	1410	ggG/gg																																																																															
ATR	545	MSKCC	GRCh37	3	142217557	142217557	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	12	370	1	ENST00000350721.4:c.5440delA	p.Arg1814GlufsTer10	p.R1814Efs*10	ENST00000350721	NM_001184.3	1814	Aga/ga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	98	701	2	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416952	416953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	27	524	6	ENST00000399788.2:c.3597dupA	p.Gly1200ArgfsTer7	p.G1200Rfs*7	ENST00000399788	NM_001042603.1	1199	-/A																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303220	15303220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	18	822	1	ENST00000263388.2:c.308G>A	p.Arg103Gln	p.R103Q	ENST00000263388	NM_000435.2	103	cGa/cAa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485403	57485403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	17	368	0	ENST00000371085.3:c.985G>A	p.Gly329Arg	p.G329R	ENST00000371085	NM_000516.4	329	Gga/Aga																																																																															
MGA	23269	MSKCC	GRCh37	15	42054541	42054541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	14	384	2	ENST00000219905.7:c.7731delA	p.Asp2578ThrfsTer10	p.D2578Tfs*10	ENST00000219905	NM_001164273.1	2575	agA/ag																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384650	31384651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756395138		P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	15	725	0	ENST00000328111.2:c.1359dup	p.Leu454AlafsTer11	p.L454Afs*11	ENST00000328111	NM_006892.3	451	gag/gaGg																																																																															
MGA	23269	MSKCC	GRCh37	15	42042077	42042077	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	23	563	1	ENST00000219905.7:c.6276delA	p.Ala2093ProfsTer9	p.A2093Pfs*9	ENST00000219905	NM_001164273.1	2091	gAa/ga																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366207	15366207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	32	791	0	ENST00000263377.2:c.1948G>A	p.Asp650Asn	p.D650N	ENST00000263377	NM_058243.2	650	Gac/Aac																																																																															
IRF4	3662	MSKCC	GRCh37	6	394902	394902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	10	582	0	ENST00000380956.4:c.298G>A	p.Ala100Thr	p.A100T	ENST00000380956	NM_001195286.1	100	Gct/Act																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	33	606	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	13	832	4	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031919	10031919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	23	735	1	ENST00000330684.3:c.904G>A	p.Ala302Thr	p.A302T	ENST00000330684	NM_001134407.1	302	Gct/Act																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902297	50902297	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	15	824	0	ENST00000440232.2:c.193del	p.Val65LeufsTer11	p.V65Lfs*11	ENST00000440232	NM_002691.3	63	gaG/ga																																																																															
APC	324	MSKCC	GRCh37	5	112176395	112176395	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	11	355	0	ENST00000257430.4:c.5104G>T	p.Gly1702Ter	p.G1702*	ENST00000257430	NM_000038.5	1702	Gga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344494	118344495	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	16	300	4	ENST00000534358.1:c.2629_2630del	p.Asp877ProfsTer8	p.D877Pfs*8	ENST00000534358	NM_005933.3	874	AGa/a																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856434	111856434	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	17	235	0	ENST00000341259.2:c.489delC	p.Thr165ProfsTer32	p.T165Pfs*32	ENST00000341259	NM_005475.2	162	gCc/gc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866417	37866417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	61	757	0	ENST00000269571.5:c.722C>T	p.Ala241Val	p.A241V	ENST00000269571		241	gCt/gTt																																																																															
MET	4233	MSKCC	GRCh37	7	116340270	116340270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	49	360	0	ENST00000397752.3:c.1132G>A	p.Val378Ile	p.V378I	ENST00000397752	NM_000245.2	378	Gtc/Atc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	79	765	1	ENST00000407977.2:c.349_350delinsA	p.Arg117ThrfsTer41	p.R117Tfs*41	ENST00000407977		117	CGc/Ac																																																																															
JAK3	3718	MSKCC	GRCh37	19	17946749	17946749	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	34	778	0	ENST00000458235.1:c.1898A>G	p.Tyr633Cys	p.Y633C	ENST00000458235	NM_000215.3	633	tAc/tGc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001523	150001523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	21	450	0	ENST00000253339.5:c.2081G>A	p.Arg694His	p.R694H	ENST00000253339		694	cGt/cAt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562607	21562607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	22	282	0	ENST00000382592.4:c.1312G>A	p.Ala438Thr	p.A438T	ENST00000382592	NM_014572.2	438	Gcg/Acg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118363835	118363835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	50	583	0	ENST00000534358.1:c.5068G>A	p.Glu1690Lys	p.E1690K	ENST00000534358	NM_005933.3	1690	Gaa/Aaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879593	151879594	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	10	370	0	ENST00000262189.6:c.5349_5351dup	p.Gln1787dup	p.Q1787dup	ENST00000262189	NM_170606.2	1787	caa/caGCAa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465624	99465624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	22	600	0	ENST00000268035.6:c.2449G>A	p.Ala817Thr	p.A817T	ENST00000268035	NM_000875.3	817	Gcc/Acc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782277	56782277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	30	629	3	ENST00000308159.5:c.118G>A	p.Gly40Arg	p.G40R	ENST00000308159	NM_014669.4	40	Gga/Aga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426237	49426242	+	inframe_deletion	In_Frame_Del	DEL	GGCTGG	GGCTGG	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	48	838	0	ENST00000301067.7:c.12246_12251del	p.Gln4085_Pro4086del	p.Q4085_P4086del	ENST00000301067	NM_003482.3	4082	ccCCAGCCt/cct																																																																															
MSI1	4440	MSKCC	GRCh37	12	120783422	120783422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	30	715	0	ENST00000257552.2:c.1061C>T	p.Ala354Val	p.A354V	ENST00000257552	NM_002442.3	354	gCc/gTc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435513	110435513	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	26	464	0	ENST00000375856.3:c.2888del	p.Pro963ArgfsTer17	p.P963Rfs*17	ENST00000375856	NM_003749.2	963	cCg/cg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274064	10274064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	15	762	1	ENST00000330684.3:c.205G>A	p.Val69Met	p.V69M	ENST00000330684	NM_001134407.1	69	Gtg/Atg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56865863	56865863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	29	435	0	ENST00000308159.5:c.1195G>A	p.Val399Ile	p.V399I	ENST00000308159	NM_014669.4	399	Gtc/Atc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348062	89348062	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	35	1013	1	ENST00000301030.4:c.4888G>T	p.Gly1630Trp	p.G1630W	ENST00000301030	NM_001256183.1	1630	Ggg/Tgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29663905	29663905	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	29	401	0	ENST00000358273.4:c.6400T>C	p.Cys2134Arg	p.C2134R	ENST00000358273	NM_001042492.2	2134	Tgt/Cgt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39629551	39629551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	29	380	0	ENST00000262039.4:c.2245C>A	p.Leu749Ile	p.L749I	ENST00000262039	NM_002647.2	749	Ctt/Att																																																																															
PMAIP1	5366	MSKCC	GRCh37	18	57567417	57567417	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	49	527	0	ENST00000316660.6:c.8G>T	p.Gly3Val	p.G3V	ENST00000316660	NM_021127.2	3	gGg/gTg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39285942	39285942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	25	336	0	ENST00000402219.2:c.217C>T	p.Arg73Cys	p.R73C	ENST00000402219	NM_005633.3	73	Cgt/Tgt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99149918	99149918	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	16	585	1	ENST00000074304.5:c.230A>G	p.Gln77Arg	p.Q77R	ENST00000074304	NM_001134224.1	77	cAg/cGg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660165	227660165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	29	713	0	ENST00000305123.5:c.3290G>A	p.Arg1097Gln	p.R1097Q	ENST00000305123	NM_005544.2	1097	cGg/cAg																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961357	54961357	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	38	524	0	ENST00000312783.6:c.275T>C	p.Leu92Pro	p.L92P	ENST00000312783	NM_198436.1	92	cTg/cCg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37092010	37092010	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	21	491	0	ENST00000231790.2:c.2138del	p.Lys713SerfsTer70	p.K713Sfs*70	ENST00000231790	NM_000249.3	713	Aag/ag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165647	47165647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	13	526	0	ENST00000409792.3:c.479C>T	p.Thr160Ile	p.T160I	ENST00000409792	NM_014159.6	160	aCc/aTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249501	153249501	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	29	502	0	ENST00000281708.4:c.1277C>A	p.Ser426Ter	p.S426*	ENST00000281708	NM_033632.3	426	tCa/tAa																																																																															
LYN	4067	MSKCC	GRCh37	8	56854492	56854492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	20	508	0	ENST00000519728.1:c.74G>A	p.Arg25His	p.R25H	ENST00000519728	NM_002350.3	25	cGt/cAt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39914713	39914715	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	25	308	0	ENST00000378444.4:c.4647_4649del	p.Leu1550del	p.L1550del	ENST00000378444	NM_001123385.1	1549	ctTCTc/ctc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	322	516	0	ENST00000250448.2:c.781C>G	p.Arg261Gly	p.R261G	ENST00000250448	NM_004496.3	261	Cgc/Ggc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998544	100998544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	48	593	1	ENST00000325455.5:c.1258G>A	p.Gly420Arg	p.G420R	ENST00000325455	NM_001202474.3	420	Ggg/Agg																																																																															
RAD51B	5890	MSKCC	GRCh37	14	69061250	69061250	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	98	119	0	ENST00000487270.1:c.1085A>G	p.Glu362Gly	p.E362G	ENST00000487270	NM_133509.3	362	gAa/gGa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675570	30675570	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	370	594	0	ENST00000376406.3:c.2786A>C	p.Asp929Ala	p.D929A	ENST00000376406	NM_014641.2	929	gAt/gCt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151835938	151835938	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	284	353	0	ENST00000262189.6:c.14586del	p.Phe4862LeufsTer43	p.F4862Lfs*43	ENST00000262189	NM_170606.2	4862	ttT/tt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913400		P-0045341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	14	219	0	ENST00000349496.5:c.98C>A	p.Ser33Tyr	p.S33Y	ENST00000349496	NM_001904.3	33	tCt/tAt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043407	180043407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	220	442	0	ENST00000261937.6:c.3179G>A	p.Arg1060Gln	p.R1060Q	ENST00000261937	NM_182925.4	1060	cGg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874980	151874980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	73	147	1	ENST00000262189.6:c.7558G>A	p.Val2520Ile	p.V2520I	ENST00000262189	NM_170606.2	2520	Gta/Ata																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0045344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	68	284	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112174490	112174493	+	frameshift_variant	Frame_Shift_Del	DEL	CAAT	CAAT	-	rs1267727476		P-0045344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	45	212	0	ENST00000257430.4:c.3202_3205del	p.Ser1068GlyfsTer57	p.S1068Gfs*57	ENST00000257430	NM_000038.5	1067	CAATca/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	143	556	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	119	348	0	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																															
STAT3	6774	MSKCC	GRCh37	17	40500453	40500453	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	110	334	0	ENST00000264657.5:c.82A>G	p.Met28Val	p.M28V	ENST00000264657	NM_139276.2	28	Atg/Gtg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79952308	79952308	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	58	290	0	ENST00000265081.6:c.316C>T	p.Gln106Ter	p.Q106*	ENST00000265081	NM_002439.4	106	Caa/Taa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	26	616	0	ENST00000347630.2:c.259T>G	p.Tyr87Asp	p.Y87D	ENST00000347630	NM_001007230.1	87	Tac/Gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0045238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	253	914	0	ENST00000269305.4:c.394A>T	p.Lys132Ter	p.K132*	ENST00000269305	NM_001126112.2	132	Aag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42058948	42058948	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144386608		P-0045238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	77	418	1	ENST00000219905.7:c.8668G>A	p.Val2890Ile	p.V2890I	ENST00000219905	NM_001164273.1	2890	Gtt/Att																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	28	401	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	27	328	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0045240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	28	618	0	ENST00000269305.4:c.559+1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0045243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	135	667	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042069-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			294	79	453	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374244	138374244	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042069-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			324	58	467	0	ENST00000289153.2:c.3200A>T	p.Asp1067Val	p.D1067V	ENST00000289153	NM_006219.2	1067	gAc/gTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259250	89259250	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042069-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			395	103	409	0	ENST00000336596.2:c.394G>T	p.Gly132Trp	p.G132W	ENST00000336596	NM_005233.5	132	Ggg/Tgg																																																																															
HGF	3082	MSKCC	GRCh37	7	81372696	81372696	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042069-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			287	64	334	0	ENST00000222390.5:c.838T>A	p.Trp280Arg	p.W280R	ENST00000222390	NM_000601.4	280	Tgg/Agg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932060	39932061	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	AT			P-0042069-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			297	33	776	0	ENST00000378444.4:c.2538_2539delinsAT	p.Gln847Ter	p.Q847*	ENST00000378444	NM_001123385.1	846	ctGCag/ctATag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040653	47040653	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042069-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			263	50	797	1	ENST00000329236.7:c.1054G>T	p.Glu352Ter	p.E352*	ENST00000329236	NM_001204466.1	352	Gag/Tag																																																																															
MED12	9968	MSKCC	GRCh37	X	70347185	70347185	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0042069-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			206	25	572	0	ENST00000374080.3:c.2850-1G>T		p.X950_splice	ENST00000374080		950																																																																																
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0043102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			852	249	700	1	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACT			P-0043102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1433	471	740	0	ENST00000275493.2:c.2310_2311insTAC	p.Asp770_Asn771insTyr	p.D770_N771insY	ENST00000275493	NM_005228.3	770	gac/gACTac																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198265477	198265477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			537	94	466	0	ENST00000335508.6:c.2680G>A	p.Asp894Asn	p.D894N	ENST00000335508	NM_012433.2	894	Gat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0045113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	64	301	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187527242	187527242	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	58	400	0	ENST00000441802.2:c.10332C>G	p.Asn3444Lys	p.N3444K	ENST00000441802	NM_005245.3	3444	aaC/aaG																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188199	32188199	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	57	509	0	ENST00000375023.3:c.1142G>T	p.Cys381Phe	p.C381F	ENST00000375023	NM_004557.3	381	tGc/tTc																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804358	46804358	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139475791		P-0045135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	307	592	0	ENST00000290295.7:c.649C>T	p.Arg217Cys	p.R217C	ENST00000290295	NM_006361.5	217	Cgc/Tgc																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724510	112724510	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	318	446	0	ENST00000369452.4:c.394A>G	p.Ser132Gly	p.S132G	ENST00000369452	NM_007373.3	132	Agt/Ggt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373845	118373845	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	26	251	0	ENST00000534358.1:c.7238G>C	p.Arg2413Thr	p.R2413T	ENST00000534358	NM_005933.3	2413	aGa/aCa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060992	38060992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	203	581	0	ENST00000250448.2:c.997C>A	p.Gln333Lys	p.Q333K	ENST00000250448	NM_004496.3	333	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577146	7577156	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TAGATTACCAC	TAGATTACCAC	-			P-0045135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	396	616	0	ENST00000269305.4:c.783-1_792del		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
NF1	4763	MSKCC	GRCh37	17	29554280	29554295	+	frameshift_variant	Frame_Shift_Del	DEL	ATTGAGCATCCCACTG	ATTGAGCATCCCACTG	-			P-0045135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	41	627	0	ENST00000358273.4:c.2296_2311del	p.Ile766GlnfsTer20	p.I766Qfs*20	ENST00000358273	NM_001042492.2	766	ATTGAGCATCCCACTGca/ca																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58725420	58725420	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	102	418	0	ENST00000305921.3:c.994C>T	p.Gln332Ter	p.Q332*	ENST00000305921	NM_003620.3	332	Caa/Taa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15378317	15378317	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	29	315	0	ENST00000263377.2:c.469T>G	p.Phe157Val	p.F157V	ENST00000263377	NM_058243.2	157	Ttc/Gtc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248353	212248353	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	64	228	0	ENST00000342788.4:c.3914A>G	p.Asn1305Ser	p.N1305S	ENST00000342788	NM_005235.2	1305	aAt/aGt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185161209	185161247	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TACATGTTTATGTTTTCTTGGAAGGGGTGTTTGTACTCA	TACATGTTTATGTTTTCTTGGAAGGGGTGTTTGTACTCA	-			P-0045135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	209	399	0	ENST00000265026.3:c.660-24_674del		p.X220_splice	ENST00000265026	NM_004721.4	220																																																																																
LATS1	9113	MSKCC	GRCh37	6	150004454	150004454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	378	417	0	ENST00000253339.5:c.1771G>A	p.Asp591Asn	p.D591N	ENST00000253339		591	Gat/Aat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859713	151859755	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGGTGTGCTCACTGCAGGAGTAGAGGTAGTTTCTGAGATGC	CTGGGTGTGCTCACTGCAGGAGTAGAGGTAGTTTCTGAGATGC	-			P-0045135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	55	340	0	ENST00000262189.6:c.10907_10949del	p.Gly3636ValfsTer31	p.G3636Vfs*31	ENST00000262189	NM_170606.2	3636	gGCATCTCAGAAACTACCTCTACTCCTGCAGTGAGCACACCCAGt/gt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	117	319	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581309	48581309	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	41	401	0	ENST00000342988.3:c.613G>T	p.Glu205Ter	p.E205*	ENST00000342988	NM_005359.5	205	Gag/Tag																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940995	49940997	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0045137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	33	775	1	ENST00000296474.3:c.46_48del	p.Leu17del	p.L17del	ENST00000296474	NM_002447.2	16	CTG/-																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250782	26250782	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	29	422	0	ENST00000446824.2:c.52C>G	p.Arg18Gly	p.R18G	ENST00000446824	NM_021018.2	18	Cgc/Ggc																																																																															
ABL1	25	MSKCC	GRCh37	9	133759870	133759870	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	37	715	1	ENST00000318560.5:c.2193G>A	p.Trp731Ter	p.W731*	ENST00000318560	NM_005157.4	731	tgG/tgA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023423	27023423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	38	447	0	ENST00000324856.7:c.529C>T	p.Gln177Ter	p.Q177*	ENST00000324856	NM_006015.4	177	Caa/Taa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111494	8111495	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTGGAGG			P-0045140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	15	510	0	ENST00000346208.3:c.981_987dupCTGGAGG	p.Arg330LeufsTer24	p.R330Lfs*24	ENST00000346208		327	ctc/ctCTGGAGGc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123202427	123202427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	12	276	0	ENST00000218089.9:c.2279G>A	p.Arg760His	p.R760H	ENST00000218089	NM_001042749.1	760	cGt/cAt																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316352	14316352	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	15	456	0	ENST00000256196.4:c.253A>C	p.Thr85Pro	p.T85P	ENST00000256196		85	Act/Cct																																																																															
CIC	23152	MSKCC	GRCh37	19	42796882	42796883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	216	957	3	ENST00000575354.2:c.3347dupC	p.Ser1117LysfsTer34	p.S1117Kfs*34	ENST00000575354	NM_015125.3	1114	gcc/gCcc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390736	139390736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	239	935	1	ENST00000277541.6:c.7455del	p.Ser2486ArgfsTer103	p.S2486Rfs*103	ENST00000277541	NM_017617.3	2485	ccC/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438211	49438211	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	152	529	0	ENST00000301067.7:c.5058delA	p.Lys1686AsnfsTer36	p.K1686Nfs*36	ENST00000301067	NM_003482.3	1686	aaA/aa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639540	3639540	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs17136464		P-0045144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	255	883	1	ENST00000294008.3:c.4099G>A	p.Ala1367Thr	p.A1367T	ENST00000294008	NM_032444.2	1367	Gcc/Acc																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439919	51439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	94	279	0	ENST00000262662.1:c.488del	p.Gly163GlufsTer24	p.G163Efs*24	ENST00000262662		162	Ggg/gg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123239405	123239405	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	47	327	0	ENST00000358487.5:c.2432A>G	p.Gln811Arg	p.Q811R	ENST00000358487	NM_000141.4	811	cAg/cGg																																																																															
MAX	4149	MSKCC	GRCh37	14	65560457	65560457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	66	356	0	ENST00000358664.4:c.140G>A	p.Arg47Gln	p.R47Q	ENST00000358664	NM_002382.4	47	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574006	7574007	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	221	685	0	ENST00000269305.4:c.1020dup	p.Phe341ValfsTer6	p.F341Vfs*6	ENST00000269305	NM_001126112.2	340	-/G																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223069	5223069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	108	926	1	ENST00000357368.4:c.2734G>A	p.Gly912Ser	p.G912S	ENST00000357368	NM_002850.3	912	Ggc/Agc																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22142579	22142579	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	54	428	0	ENST00000215832.6:c.823T>C	p.Trp275Arg	p.W275R	ENST00000215832	NM_002745.4	275	Tgg/Cgg																																																																															
EP300	2033	MSKCC	GRCh37	22	41568618	41568618	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	40	416	0	ENST00000263253.7:c.4568A>G	p.Glu1523Gly	p.E1523G	ENST00000263253	NM_001429.3	1523	gAg/gGg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37090092	37090092	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	95	413	0	ENST00000231790.2:c.1981del	p.Ala661ProfsTer4	p.A661Pfs*4	ENST00000231790	NM_000249.3	661	Gcc/cc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630819	187630820	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	78	447	0	ENST00000441802.2:c.162dup	p.His55AlafsTer26	p.H55Afs*26	ENST00000441802	NM_005245.3	54	-/G																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197219	26197220	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0045144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	95	558	0	ENST00000356476.2:c.259_260del	p.Ser87LeufsTer19	p.S87Lfs*19	ENST00000356476		87	AGc/c																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710624	117710624	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	59	282	0	ENST00000368508.3:c.1648T>G	p.Ser550Ala	p.S550A	ENST00000368508	NM_002944.2	550	Tca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	415	611	0	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874147	151874148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	189	363	5	ENST00000262189.6:c.8390dup	p.Glu2798GlyfsTer11	p.E2798Gfs*11	ENST00000262189	NM_170606.2	2797	aag/aaAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72863719	72863719	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	315	443	0	ENST00000268489.5:c.3488C>A	p.Ala1163Asp	p.A1163D	ENST00000268489	NM_006885.3	1163	gCt/gAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68950443	68950443	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	214	343	0	ENST00000288368.4:c.755T>C	p.Leu252Ser	p.L252S	ENST00000288368	NM_024870.2	252	tTa/tCa																																																																															
MED12	9968	MSKCC	GRCh37	X	70349937	70349937	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	441	313	0	ENST00000374080.3:c.3920T>C	p.Leu1307Pro	p.L1307P	ENST00000374080		1307	cTg/cCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0045148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	127	278	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175101	112175101	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	43	140	0	ENST00000257430.4:c.3814del	p.Ser1272GlnfsTer16	p.S1272Qfs*16	ENST00000257430	NM_000038.5	1270	tgT/tg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99179952	99179952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	294	629	0	ENST00000074304.5:c.1895C>T	p.Pro632Leu	p.P632L	ENST00000074304	NM_001134224.1	632	cCg/cTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117906	70117907	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	120	494	0	ENST00000245479.2:c.376dup	p.Gln126ProfsTer126	p.Q126Pfs*126	ENST00000245479	NM_000346.3	125	gac/gaCc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989616	212989616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	98	201	0	ENST00000342788.4:c.95C>T	p.Thr32Met	p.T32M	ENST00000342788	NM_005235.2	32	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0045153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	857	667	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	72	159	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437614	52437614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	382	678	4	ENST00000460680.1:c.1547C>T	p.Pro516Leu	p.P516L	ENST00000460680	NM_004656.3	516	cCg/cTg																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99808294	99808294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	144	323	3	ENST00000280892.6:c.395G>A	p.Arg132Gln	p.R132Q	ENST00000280892	NM_001130678.1	132	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	17	354	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212286764	212286764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	20	312	0	ENST00000342788.4:c.2932G>T	p.Ala978Ser	p.A978S	ENST00000342788	NM_005235.2	978	Gct/Tct																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864721	57864721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	40	807	0	ENST00000228682.2:c.2198G>T	p.Gly733Val	p.G733V	ENST00000228682	NM_005269.2	733	gGg/gTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600336	10600336	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	27	570	0	ENST00000171111.5:c.1519C>G	p.Arg507Gly	p.R507G	ENST00000171111	NM_203500.1	507	Cga/Gga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030473	47030473	+	intron_variant	Intron	DEL	G	G	-			P-0045163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	36	955	0	ENST00000329236.7:c.201+1577del		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
GPS2	2874	MSKCC	GRCh37	17	7217686	7217686	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	241	447	0	ENST00000380728.2:c.241G>T	p.Glu81Ter	p.E81*	ENST00000380728		81	Gaa/Taa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5225801	5225801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	141	866	2	ENST00000357368.4:c.2431G>A	p.Ala811Thr	p.A811T	ENST00000357368	NM_002850.3	811	Gcc/Acc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650850	48650850	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	255	852	0	ENST00000376670.3:c.719C>G	p.Pro240Arg	p.P240R	ENST00000376670	NM_002049.3	240	cCc/cGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0045172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	80	330	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424696	49424696	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	91	689	0	ENST00000301067.7:c.13651T>G	p.Leu4551Val	p.L4551V	ENST00000301067	NM_003482.3	4551	Ttg/Gtg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045104	47045132	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCTCTTGCAGCAAAACCTTGAGATTCAC	CCCTCTTGCAGCAAAACCTTGAGATTCAC	-			P-0045172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	124	579	0	ENST00000329236.7:c.2122-10_2140del		p.X708_splice	ENST00000329236	NM_001204466.1	708																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0045173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	124	357	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	69	196	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225264		P-0045173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	38	521	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446208	49446208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0045173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	69	729	0	ENST00000301067.7:c.1259-1G>A		p.X420_splice	ENST00000301067	NM_003482.3	420																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11141533	11141534	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0045173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	57	735	1	ENST00000344626.4:c.3512_3513del	p.Val1171AspfsTer4	p.V1171Dfs*4	ENST00000344626	NM_003072.3	1170	acTGtg/actg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023165	150023165	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	72	498	0	ENST00000253339.5:c.98A>G	p.Glu33Gly	p.E33G	ENST00000253339		33	gAa/gGa																																																																															
MYC	4609	MSKCC	GRCh37	8	128753202	128753202	+	stop_lost	Nonstop_Mutation	SNP	T	T	G			P-0045173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	47	256	0	ENST00000377970.2:c.1363T>G	p.Ter455GluextTer19	p.*455Eext*19	ENST00000377970	NM_002467.4	455	Taa/Gaa																																																																															
FH	2271	MSKCC	GRCh37	1	241671932	241671932	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	52	421	0	ENST00000366560.3:c.709C>T	p.Gln237Ter	p.Q237*	ENST00000366560	NM_000143.3	237	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832202	72832202	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	56	581	0	ENST00000268489.5:c.4379T>G	p.Ile1460Ser	p.I1460S	ENST00000268489	NM_006885.3	1460	aTc/aGc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144049	11144051	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0045184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1272	29	879	0	ENST00000344626.4:c.3634_3636del	p.Glu1212del	p.E1212del	ENST00000344626	NM_003072.3	1210	gtGGAg/gtg																																																																															
NBN	4683	MSKCC	GRCh37	8	90990538	90990538	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	12	327	0	ENST00000265433.3:c.494T>A	p.Leu165His	p.L165H	ENST00000265433	NM_002485.4	165	cTc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057907	27057908	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGACG			P-0045184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1425	21	692	0	ENST00000324856.7:c.1616_1620dup	p.Thr541ArgfsTer80	p.T541Rfs*80	ENST00000324856	NM_006015.4	539	tcg/tCGACGcg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087392	27087392	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	10	634	0	ENST00000324856.7:c.1966G>C	p.Ala656Pro	p.A656P	ENST00000324856	NM_006015.4	656	Gct/Cct																																																																															
STK11	6794	MSKCC	GRCh37	19	1207119	1207120	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0045184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1606	20	963	1	ENST00000326873.7:c.207_208delinsTT	p.Glu70Ter	p.E70*	ENST00000326873	NM_000455.4	69	tcGGag/tcTTag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602736	10602736	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1451	38	1017	0	ENST00000171111.5:c.842T>A	p.Leu281Gln	p.L281Q	ENST00000171111	NM_203500.1	281	cTg/cAg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296339	15296339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1525	35	1048	0	ENST00000263388.2:c.2103del	p.His701GlnfsTer159	p.H701Qfs*159	ENST00000263388	NM_000435.2	701	caT/ca																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876488	35876488	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	20	595	2	ENST00000303115.3:c.1280C>A	p.Thr427Lys	p.T427K	ENST00000303115	NM_002185.3	427	aCa/aAa																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074080	8074081	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0045204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	43	334	0	ENST00000377482.5:c.578_579del	p.Tyr193Ter	p.Y193*	ENST00000377482	NM_018948.3	193	tAT/t																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444684	49444684	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	411	896	0	ENST00000301067.7:c.2782C>G	p.Gln928Glu	p.Q928E	ENST00000301067	NM_003482.3	928	Cag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579410	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGCCAGGAG	GGGGCCAGGAG	-			P-0045204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	159	870	0	ENST00000269305.4:c.267_277delCTCCTGGCCCC	p.Ser90ValfsTer55	p.S90Vfs*55	ENST00000269305	NM_001126112.2	89	ccCTCCTGGCCCCtg/cctg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227647	36227647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	81	654	0	ENST00000222270.7:c.7216G>A	p.Ala2406Thr	p.A2406T	ENST00000222270	NM_014727.1	2406	Gcc/Acc																																																																															
EP300	2033	MSKCC	GRCh37	22	41548213	41548213	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	61	266	0	ENST00000263253.7:c.3001A>G	p.Lys1001Glu	p.K1001E	ENST00000263253	NM_001429.3	1001	Aaa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952063	178952063	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	109	328	0	ENST00000263967.3:c.3118A>T	p.Met1040Leu	p.M1040L	ENST00000263967	NM_006218.2	1040	Atg/Ttg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	131	512	1				ENST00000310581	NM_198253.2																																																																																	
MDC1	9656	MSKCC	GRCh37	6	30675735	30675735	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1191	81	821	0	ENST00000376406.3:c.2621C>G	p.Ser874Cys	p.S874C	ENST00000376406	NM_014641.2	874	tCt/tGt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552770	106552770	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	133	562	0	ENST00000369096.4:c.735G>C	p.Lys245Asn	p.K245N	ENST00000369096	NM_001198.3	245	aaG/aaC																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402683	139402683	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0045204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	179	835	0	ENST00000277541.6:c.3325+1G>T		p.X1109_splice	ENST00000277541	NM_017617.3	1109																																																																																
MET	4233	MSKCC	GRCh37	7	116411882	116411903	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCTTTCTCTCTGTTTTAAGA	TTTCTTTCTCTCTGTTTTAAGA	-			P-0045205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	39	870	0	ENST00000397752.3:c.2888-20_2889del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	11	397	0	ENST00000347630.2:c.305T>C	p.Phe102Ser	p.F102S	ENST00000347630	NM_001007230.1	102	tTc/tCc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517497	176517497	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	10	794	0	ENST00000292408.4:c.198G>A	p.Trp66Ter	p.W66*	ENST00000292408	NM_213647.1	66	tgG/tgA																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0045207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	101	509	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518437	204518437	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201947927		P-0045207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	43	383	0	ENST00000367182.3:c.1100C>T	p.Ser367Leu	p.S367L	ENST00000367182	NM_001278516.1	367	tCg/tTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53231106	53231106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	167	293	0	ENST00000375401.3:c.1796G>A	p.Arg599His	p.R599H	ENST00000375401	NM_004187.3	599	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575055	48575055	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0045207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	10	222	0	ENST00000342988.3:c.250-1G>A		p.X84_splice	ENST00000342988	NM_005359.5	84																																																																																
TP53	7157	MSKCC	GRCh37	17	7578460	7578474	+	inframe_deletion	In_Frame_Del	DEL	ACGCGGGTGCCGGGC	ACGCGGGTGCCGGGC	-			P-0045207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	171	765	0	ENST00000269305.4:c.456_470del	p.Pro153_Val157del	p.P153_V157del	ENST00000269305	NM_001126112.2	152	ccGCCCGGCACCCGCGTc/ccc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0045210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	32	596	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68835596	68835596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	35	531	1	ENST00000261769.5:c.187C>T	p.Arg63Ter	p.R63*	ENST00000261769	NM_004360.3	63	Cga/Tga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061312	38061312	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	50	794	0	ENST00000250448.2:c.677A>G	p.Asp226Gly	p.D226G	ENST00000250448	NM_004496.3	226	gAc/gGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	54	335	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0045212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	95	669	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584533	48584533	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	49	329	0	ENST00000342988.3:c.706G>T	p.Gly236Ter	p.G236*	ENST00000342988	NM_005359.5	236	Gga/Tga																																																																															
CALR	811	MSKCC	GRCh37	19	13051093	13051093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	58	500	0	ENST00000316448.5:c.529C>G	p.Arg177Gly	p.R177G	ENST00000316448	NM_004343.3	177	Cgg/Ggg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30648412	30648412	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	67	527	0	ENST00000359013.4:c.37C>G	p.His13Asp	p.H13D	ENST00000359013	NM_001024847.2	13	Cac/Gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	53	750	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
BRAF	673	MSKCC	GRCh37	7	140439656	140439656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	22	314	0	ENST00000288602.6:c.2083G>C	p.Glu695Gln	p.E695Q	ENST00000288602	NM_004333.4	695	Gag/Cag																																																																															
PMS1	5378	MSKCC	GRCh37	2	190732584	190732584	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	28	380	0	ENST00000441310.2:c.2402G>C	p.Arg801Thr	p.R801T	ENST00000441310	NM_000534.4	801	aGa/aCa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66774125	66774125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	48	880	1	ENST00000307102.5:c.601C>T	p.Arg201Cys	p.R201C	ENST00000307102	NM_002755.3	201	Cgt/Tgt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098973	178098973	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	17	247	0	ENST00000397062.3:c.72G>T	p.Trp24Cys	p.W24C	ENST00000397062	NM_006164.4	24	tgG/tgT																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813941	50813941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	78	555	0	ENST00000398568.2:c.1495G>A	p.Ala499Thr	p.A499T	ENST00000398568	NM_001042412.1	499	Gct/Act																																																																															
KDM5A	5927	MSKCC	GRCh37	12	406210	406210	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	52	302	0	ENST00000399788.2:c.4231C>G	p.Gln1411Glu	p.Q1411E	ENST00000399788	NM_001042603.1	1411	Caa/Gaa																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112745386	112745386	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	29	403	0	ENST00000369452.4:c.704G>T	p.Gly235Val	p.G235V	ENST00000369452	NM_007373.3	235	gGt/gTt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483959	88483959	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	78	544	0	ENST00000360948.2:c.1611C>A	p.Asp537Glu	p.D537E	ENST00000360948	NM_001012338.2	537	gaC/gaA																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469630	25469630	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	41	647	0	ENST00000264709.3:c.1138G>T	p.Ala380Ser	p.A380S	ENST00000264709	NM_175629.2	380	Gcg/Tcg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38982012	38982012	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	95	372	0	ENST00000357387.3:c.710A>T	p.His237Leu	p.H237L	ENST00000357387	NM_152756.3	237	cAt/cTt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180038369	180038369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	25	676	1	ENST00000261937.6:c.3648C>G	p.Asp1216Glu	p.D1216E	ENST00000261937	NM_182925.4	1216	gaC/gaG																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670594	30670594	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	49	559	0	ENST00000376406.3:c.5926G>C	p.Glu1976Gln	p.E1976Q	ENST00000376406	NM_014641.2	1976	Gag/Cag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967225	93967225	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	47	330	0	ENST00000369303.4:c.2127A>G	p.Ile709Met	p.I709M	ENST00000369303	NM_004440.3	709	atA/atG																																																																															
TEK	7010	MSKCC	GRCh37	9	27192495	27192495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	57	449	0	ENST00000380036.4:c.1498G>A	p.Glu500Lys	p.E500K	ENST00000380036	NM_000459.3	500	Gag/Aag																																																																															
ABL1	25	MSKCC	GRCh37	9	133759938	133759939	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	35	818	3	ENST00000318560.5:c.2261_2262delinsTT	p.Gly754Val	p.G754V	ENST00000318560	NM_005157.4	754	gGG/gTT																																																																															
MED12	9968	MSKCC	GRCh37	X	70348146	70348146	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	55	237	0	ENST00000374080.3:c.3210G>T	p.Arg1070Ser	p.R1070S	ENST00000374080		1070	agG/agT																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94212929	94212929	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0045247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	27	236	0	ENST00000323929.3:c.315-2A>T		p.X105_splice	ENST00000323929	NM_005591.3	105																																																																																
ARID2	196528	MSKCC	GRCh37	12	46245424	46245424	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	25	358	0	ENST00000334344.6:c.3519del	p.Ile1174Ter	p.I1174*	ENST00000334344	NM_152641.2	1173	aCc/ac																																																																															
MAX	4149	MSKCC	GRCh37	14	65560534	65560534	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0045247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	59	327	0	ENST00000358664.4:c.64-1G>T		p.X22_splice	ENST00000358664	NM_002382.4	22																																																																																
ANKRD11	29123	MSKCC	GRCh37	16	89371734	89371734	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	55	593	0	ENST00000301030.4:c.106C>G	p.Leu36Val	p.L36V	ENST00000301030	NM_001256183.1	36	Cta/Gta																																																																															
NF1	4763	MSKCC	GRCh37	17	29556445	29556445	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0045247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	29	405	0	ENST00000358273.4:c.2812A>T	p.Lys938Ter	p.K938*	ENST00000358273	NM_001042492.2	938	Aag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29557277	29557277	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0045247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	21	234	0	ENST00000358273.4:c.2991-1G>T		p.X997_splice	ENST00000358273	NM_001042492.2	997																																																																																
CRLF2	64109	MSKCC	GRCh37	X	1327796	1327796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	54	481	0	ENST00000381566.1:c.85G>A	p.Gly29Arg	p.G29R	ENST00000381566		29	Gga/Aga																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	230	379	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	230	444	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																															
APC	324	MSKCC	GRCh37	5	112177791	112177791	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	60	274	0	ENST00000257430.4:c.6500T>G	p.Ile2167Ser	p.I2167S	ENST00000257430	NM_000038.5	2167	aTt/aGt																																																																															
ATRX	546	MSKCC	GRCh37	X	76931738	76931740	+	inframe_deletion	In_Frame_Del	DEL	GTC	GTC	-			P-0045251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	133	173	1	ENST00000373344.5:c.3790_3792del	p.Asp1264del	p.D1264del	ENST00000373344	NM_000489.3	1264	GAC/-																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0045255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	31	546	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28929495		P-0045277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	353	695	1	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0045277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	286	613	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123229221	123229221	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0045277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	18	161	0	ENST00000218089.9:c.3706-1G>A		p.X1236_splice	ENST00000218089	NM_001042749.1	1236																																																																																
ATM	472	MSKCC	GRCh37	11	108192066	108192066	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	83	552	0	ENST00000278616.4:c.6491A>C	p.Glu2164Ala	p.E2164A	ENST00000278616	NM_000051.3	2164	gAg/gCg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39613904	39613904	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	29	419	0	ENST00000262039.4:c.1822A>T	p.Thr608Ser	p.T608S	ENST00000262039	NM_002647.2	608	Aca/Tca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	158	415	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0045280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	519	847	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0045280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	142	467	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0045280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	196	305	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0045280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	95	230	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944608	40944608	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs752116362		P-0045280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	172	416	0	ENST00000373198.4:c.1894C>T	p.Arg632Ter	p.R632*	ENST00000373198	NM_133170.3	632	Cga/Tga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120502041	120502041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	167	435	0	ENST00000256646.2:c.2000G>A	p.Ser667Asn	p.S667N	ENST00000256646	NM_024408.3	667	aGt/aAt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961328	15961328	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	374	511	0	ENST00000268712.3:c.6061C>T	p.Gln2021Ter	p.Q2021*	ENST00000268712	NM_006311.3	2021	Cag/Tag																																																																															
CALR	811	MSKCC	GRCh37	19	13051056	13051056	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0045280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	104	484	0	ENST00000316448.5:c.493-1G>A		p.X165_splice	ENST00000316448	NM_004343.3	165																																																																																
PIK3CB	5291	MSKCC	GRCh37	3	138478097	138478097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	230	507	0	ENST00000289153.2:c.89T>C	p.Ile30Thr	p.I30T	ENST00000289153	NM_006219.2	30	aTa/aCa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150016325	150016325	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	208	419	0	ENST00000253339.5:c.381C>A	p.Asn127Lys	p.N127K	ENST00000253339		127	aaC/aaA																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50479186	50479186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000508-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	66	253	0	ENST00000394963.4:c.34C>T	p.Pro12Ser	p.P12S	ENST00000394963	NM_003076.4	12	Cca/Tca																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0001862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			514	500	509	2	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47004877	47004877	+	5_prime_UTR_variant	5'UTR	SNP	C	C	A			P-0001862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			592	113	492	0	ENST00000329236.7:c.-133C>A		p.*45*	ENST00000329236	NM_001204466.1																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0005037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	182	431	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793663		P-0005037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	298	843	6	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106094	8106094	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	186	389	0	ENST00000346208.3:c.914G>T	p.Arg305Leu	p.R305L	ENST00000346208		305	cGa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576814	7576883	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGT	GAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGT	-			P-0005037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	154	504	0	ENST00000269305.4:c.963_993+39del		p.X321_splice	ENST00000269305	NM_001126112.2	321																																																																																
CDKN1B	1027	MSKCC	GRCh37	12	12871029	12871034	+	frameshift_variant	Frame_Shift_Del	DEL	GAGTTC	GAGTTC	AAGTG			P-0005037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	224	456	3	ENST00000228872.4:c.256_261delinsAAGTG	p.Glu86LysfsTer33	p.E86Kfs*33	ENST00000228872	NM_004064.3	86	GAGTTC/AAGTG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0005114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	50	388	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259521	55259521	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	52	390	0	ENST00000275493.2:c.2579A>T	p.Lys860Ile	p.K860I	ENST00000275493	NM_005228.3	860	aAa/aTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259542	55259542	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	47	379	0	ENST00000275493.2:c.2600A>C	p.Lys867Thr	p.K867T	ENST00000275493	NM_005228.3	867	aAa/aCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	72	510	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KDR	3791	MSKCC	GRCh37	4	55955090	55955090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	112	712	1	ENST00000263923.4:c.3455C>T	p.Thr1152Met	p.T1152M	ENST00000263923	NM_002253.2	1152	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	130	776	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729607	41729607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	136	944	6	ENST00000242208.4:c.922C>T	p.Arg308Cys	p.R308C	ENST00000242208	NM_002192.2	308	Cgt/Tgt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687129	37687129	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	136	739	0	ENST00000447079.4:c.4033G>C	p.Glu1345Gln	p.E1345Q	ENST00000447079	NM_015083.1	1345	Gaa/Caa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603128	48603128	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	54	440	0	ENST00000342988.3:c.1429G>T	p.Gly477Ter	p.G477*	ENST00000342988	NM_005359.5	477	Gga/Tga																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30320329	30320330	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	118	687	0	ENST00000322652.5:c.1275dup	p.Leu426IlefsTer10	p.L426Ifs*10	ENST00000322652	NM_015355.2	424	caa/cAaa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11264672	11264672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	106	436	1	ENST00000361445.4:c.3890C>T	p.Ser1297Leu	p.S1297L	ENST00000361445	NM_004958.3	1297	tCg/tTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099367	27099367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	125	407	2	ENST00000324856.7:c.3604C>T	p.Arg1202Trp	p.R1202W	ENST00000324856	NM_006015.4	1202	Cgg/Tgg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45795076	45795076	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	134	446	0	ENST00000372115.3:c.1510A>C	p.Ser504Arg	p.S504R	ENST00000372115	NM_001048171.1	504	Agt/Cgt																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241899	72241899	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	147	591	0	ENST00000357731.5:c.491G>T	p.Gly164Val	p.G164V	ENST00000357731	NM_173808.2	164	gGg/gTg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243800978	243800978	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	112	488	2	ENST00000263826.5:c.496C>T	p.Arg166Ter	p.R166*	ENST00000263826	NM_005465.4	166	Cga/Tga																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41268784	41268784	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	162	429	0	ENST00000349496.5:c.1022G>C	p.Ser341Thr	p.S341T	ENST00000349496	NM_001904.3	341	aGc/aCc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541795	187541795	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	140	454	0	ENST00000441802.2:c.5945A>G	p.Asp1982Gly	p.D1982G	ENST00000441802	NM_005245.3	1982	gAt/gGt																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946150	13946150	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	346	396	1	ENST00000405192.2:c.946C>T	p.Gln316Ter	p.Q316*	ENST00000405192	NM_001163147.1	316	Cag/Tag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737877	145737877	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200629599		P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	53	328	1	ENST00000428558.2:c.2953G>A	p.Val985Met	p.V985M	ENST00000428558	NM_004260.3	985	Gtg/Atg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739338	145739338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	159	439	2	ENST00000428558.2:c.2032G>A	p.Val678Met	p.V678M	ENST00000428558	NM_004260.3	678	Gtg/Atg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739628	145739628	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	132	408	1	ENST00000428558.2:c.1823A>C	p.His608Pro	p.H608P	ENST00000428558	NM_004260.3	608	cAc/cCc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741542	145741542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	165	476	0	ENST00000428558.2:c.961G>A	p.Gly321Arg	p.G321R	ENST00000428558	NM_004260.3	321	Gga/Aga																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98244416	98244416	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	114	379	0	ENST00000331920.6:c.654G>T	p.Gln218His	p.Q218H	ENST00000331920	NM_000264.3	218	caG/caT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343832	118343832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	114	402	0	ENST00000534358.1:c.1958C>T	p.Pro653Leu	p.P653L	ENST00000534358	NM_005933.3	653	cCc/cTc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856128	111856128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	121	273	0	ENST00000341259.2:c.179C>T	p.Ala60Val	p.A60V	ENST00000341259	NM_005475.2	60	gCc/gTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133257863	133257863	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	142	338	0	ENST00000320574.5:c.65A>G	p.Asp22Gly	p.D22G	ENST00000320574	NM_006231.2	22	gAt/gGt																																																																															
CDK8	1024	MSKCC	GRCh37	13	26975441	26975441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	108	325	0	ENST00000381527.3:c.1067G>A	p.Arg356Gln	p.R356Q	ENST00000381527	NM_001260.1	356	cGa/cAa																																																																															
MGA	23269	MSKCC	GRCh37	15	41988590	41988590	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	190	551	0	ENST00000219905.7:c.1382T>C	p.Leu461Ser	p.L461S	ENST00000219905	NM_001164273.1	461	tTa/tCa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88726655	88726655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	97	354	0	ENST00000360948.2:c.389G>A	p.Arg130His	p.R130H	ENST00000360948	NM_001012338.2	130	cGt/cAt																																																																															
BLM	641	MSKCC	GRCh37	15	91293173	91293173	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	88	398	0	ENST00000355112.3:c.675G>T	p.Lys225Asn	p.K225N	ENST00000355112	NM_000057.2	225	aaG/aaT																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81954827	81954827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	132	494	0	ENST00000359376.3:c.2260G>A	p.Asp754Asn	p.D754N	ENST00000359376	NM_002661.3	754	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs757274881		P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	178	487	1	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37864757	37864757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	106	325	0	ENST00000269571.5:c.409C>A	p.Leu137Met	p.L137M	ENST00000269571		137	Ctg/Atg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489486	40489486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	211	509	1	ENST00000264657.5:c.764C>T	p.Pro255Leu	p.P255L	ENST00000264657	NM_139276.2	255	cCg/cTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15284969	15284969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	130	350	0	ENST00000263388.2:c.4646C>T	p.Ala1549Val	p.A1549V	ENST00000263388	NM_000435.2	1549	gCg/gTg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57478800	57478800	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	135	393	0	ENST00000371085.3:c.386A>G	p.Asp129Gly	p.D129G	ENST00000371085	NM_000516.4	129	gAc/gGc																																																																															
AR	367	MSKCC	GRCh37	X	66905965	66905965	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	84	225	0	ENST00000374690.3:c.1882G>T	p.Gly628Ter	p.G628*	ENST00000374690	NM_000044.3	628	Gga/Tga																																																																															
MED12	9968	MSKCC	GRCh37	X	70354958	70354958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	177	253	1	ENST00000374080.3:c.4880G>A	p.Arg1627His	p.R1627H	ENST00000374080		1627	cGc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70357745	70357745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	109	281	0	ENST00000374080.3:c.5996T>C	p.Val1999Ala	p.V1999A	ENST00000374080		1999	gTg/gCg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298028	15298029	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	169	467	0	ENST00000263388.2:c.1727dup	p.Thr577HisfsTer46	p.T577Hfs*46	ENST00000263388	NM_000435.2	576	ggc/ggGc																																																																															
BRAF	673	MSKCC	GRCh37	7	140482926	140482927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs777474487		P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	36	444	1	ENST00000288602.6:c.1208dup	p.Ala404CysfsTer9	p.A404Cfs*9	ENST00000288602	NM_004333.4	403	cct/ccCt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	287	438	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885939	111885939	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	141	481	0	ENST00000341259.2:c.1566del	p.Glu523SerfsTer25	p.E523Sfs*25	ENST00000341259	NM_005475.2	521	Ccc/cc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	141	452	8	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
SYK	6850	MSKCC	GRCh37	9	93606273	93606273	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	144	377	4	ENST00000375746.1:c.98delG	p.Gly33AlafsTer2	p.G33Afs*2	ENST00000375746	NM_001174167.1	31	caG/ca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27022999	27022999	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			36	14	32	0	ENST00000324856.7:c.110delG	p.Gly37AlafsTer14	p.G37Afs*14	ENST00000324856	NM_006015.4	35	gcG/gc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074255	8074255	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	176	679	1	ENST00000377482.5:c.404delA	p.Asn135ThrfsTer40	p.N135Tfs*40	ENST00000377482	NM_018948.3	135	aAc/ac																																																																															
APC	324	MSKCC	GRCh37	5	112175101	112175101	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	89	294	0	ENST00000257430.4:c.3814del	p.Ser1272GlnfsTer16	p.S1272Qfs*16	ENST00000257430	NM_000038.5	1270	tgT/tg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244311	41244311	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	93	448	0	ENST00000357654.3:c.3237del	p.Lys1079AsnfsTer2	p.K1079Nfs*2	ENST00000357654	NM_007294.3	1079	aaA/aa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47639588	47639588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	149	428	0	ENST00000233146.2:c.687del	p.Ala230LeufsTer16	p.A230Lfs*16	ENST00000233146	NM_000251.2	227	agA/ag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	106	306	0	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta																																																																															
APC	324	MSKCC	GRCh37	5	112102932	112102932	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	112	449	0	ENST00000257430.4:c.271del	p.Met91CysfsTer34	p.M91Cfs*34	ENST00000257430	NM_000038.5	89	tcA/tc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023860	27023861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	44	91	0	ENST00000324856.7:c.971dup	p.Ala325ArgfsTer75	p.A325Rfs*75	ENST00000324856	NM_006015.4	322	-/G																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0010077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	81	175	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179462	56179462	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	295	400	0	ENST00000399503.3:c.3775C>T	p.Gln1259Ter	p.Q1259*	ENST00000399503	NM_005921.1	1259	Cag/Tag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177540	56177541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	272	462	0	ENST00000399503.3:c.2514dup	p.Glu839ArgfsTer24	p.E839Rfs*24	ENST00000399503	NM_005921.1	838	tta/ttAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0011306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	361	405	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	57	154	0	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112170652	112170652	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	180	255	0	ENST00000257430.4:c.1748C>A	p.Ser583Ter	p.S583*	ENST00000257430	NM_000038.5	583	tCa/tAa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193110988	193110988	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	41	115	0	ENST00000367435.3:c.521C>G	p.Ser174Cys	p.S174C	ENST00000367435	NM_024529.4	174	tCt/tGt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2977594	2977594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	222	494	0	ENST00000396946.4:c.1090C>T	p.Arg364Cys	p.R364C	ENST00000396946	NM_032415.4	364	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5215591	5215591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	262	330	0	ENST00000357368.4:c.4112C>T	p.Pro1371Leu	p.P1371L	ENST00000357368	NM_002850.3	1371	cCg/cTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0013855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	103	467	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0015033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	783	979	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436940	49436941	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCACTGA			P-0015033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	204	835	0	ENST00000301067.7:c.5562_5563insTCAGTGC	p.Pro1855SerfsTer7	p.P1855Sfs*7	ENST00000301067	NM_003482.3	1854	-/TCAGTGC																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153259016	153259063	+	inframe_deletion	In_Frame_Del	DEL	GTTTTACTTGTGTTGGTTCACAACTATCAATGAGTTCATCTAAAGCAA	GTTTTACTTGTGTTGGTTCACAACTATCAATGAGTTCATCTAAAGCAA	-			P-0015033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	69	426	0	ENST00000281708.4:c.752_799del	p.Leu251_Lys266del	p.L251_K266del	ENST00000281708	NM_033632.3	251	cTTGCTTTAGATGAACTCATTGATAGTTGTGAACCAACACAAGTAAAACat/cat																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858361	27858378	+	inframe_deletion	In_Frame_Del	DEL	GCGCTGAAATGGCAGTTT	GCGCTGAAATGGCAGTTT	-			P-0015033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	168	573	0	ENST00000359303.2:c.193_210del	p.Lys65_Arg70del	p.K65_R70del	ENST00000359303	NM_003535.2	65	AAACTGCCATTTCAGCGC/-																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151848544	151848550	+	frameshift_variant	Frame_Shift_Del	DEL	GATCTTT	GATCTTT	-			P-0015033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	145	581	0	ENST00000262189.6:c.12643_12649del	p.Lys4215Ter	p.K4215*	ENST00000262189	NM_170606.2	4215	AAAGATCtg/tg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738308	145738308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	308	1095	2	ENST00000428558.2:c.2677C>T	p.Pro893Ser	p.P893S	ENST00000428558	NM_004260.3	893	Ccc/Tcc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	470	741	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11168343	11168343	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	313	495	0	ENST00000361445.4:c.7529G>A	p.Gly2510Asp	p.G2510D	ENST00000361445	NM_004958.3	2510	gGt/gAt																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128015302	128015302	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	141	465	1	ENST00000285398.2:c.2219C>T	p.Ala740Val	p.A740V	ENST00000285398	NM_000122.1	740	gCa/gTa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39021160	39021160	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	114	483	0	ENST00000357387.3:c.176A>T	p.His59Leu	p.H59L	ENST00000357387	NM_152756.3	59	cAt/cTt																																																																															
IRF4	3662	MSKCC	GRCh37	6	407485	407485	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	340	543	0	ENST00000380956.4:c.1243T>C	p.Tyr415His	p.Y415H	ENST00000380956	NM_001195286.1	415	Tat/Cat																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133994	38133994	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	51	641	0	ENST00000317025.8:c.3892G>C	p.Glu1298Gln	p.E1298Q	ENST00000317025	NM_023034.1	1298	Gag/Cag																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980508	70980508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	501	955	1	ENST00000276594.2:c.869C>T	p.Ala290Val	p.A290V	ENST00000276594	NM_024504.3	290	gCc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	184	304	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0016837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	323	578	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
YES1	7525	MSKCC	GRCh37	18	739784	739784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	101	484	0	ENST00000314574.4:c.1088G>T	p.Gly363Val	p.G363V	ENST00000314574	NM_005433.3	363	gGa/gTa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228281	53228281	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	289	495	0	ENST00000375401.3:c.2121T>G	p.Cys707Trp	p.C707W	ENST00000375401	NM_004187.3	707	tgT/tgG																																																																															
TSC1	7248	MSKCC	GRCh37	9	135787841	135787841	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	83	485	0	ENST00000298552.3:c.741G>A	p.Trp247Ter	p.W247*	ENST00000298552	NM_001162426.1	247	tgG/tgA																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350323	15350323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	57	577	0	ENST00000263377.2:c.3456G>A	p.Met1152Ile	p.M1152I	ENST00000263377	NM_058243.2	1152	atG/atA																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161238	56161238	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	98	650	0	ENST00000399503.3:c.1107A>C	p.Glu369Asp	p.E369D	ENST00000399503	NM_005921.1	369	gaA/gaC																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413265	63413265	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0018389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	22	110	0	ENST00000330258.3:c.-98-1G>C		p.X33_splice	ENST00000330258	NM_152424.3	33																																																																																
DOT1L	84444	MSKCC	GRCh37	19	2222151	2222151	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760542574		P-0018389-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			959	144	900	3	ENST00000398665.3:c.2983C>T	p.Arg995Trp	p.R995W	ENST00000398665	NM_032482.2	995	Cgg/Tgg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851765	134851765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018389-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			634	79	559	0	ENST00000398015.3:c.1171G>A	p.Val391Ile	p.V391I	ENST00000398015	NM_004441.4	391	Gtc/Atc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289638	15289638	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018389-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			928	143	710	0	ENST00000263388.2:c.3833C>G	p.Ala1278Gly	p.A1278G	ENST00000263388	NM_000435.2	1278	gCc/gGc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46574077	46574077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018389-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			989	190	718	0	ENST00000263734.3:c.92C>T	p.Thr31Met	p.T31M	ENST00000263734	NM_001430.4	31	aCg/aTg																																																																															
MYC	4609	MSKCC	GRCh37	8	128753200	128753200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018389-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			400	29	251	0	ENST00000377970.2:c.1361C>T	p.Ala454Val	p.A454V	ENST00000377970	NM_002467.4	454	gCg/gTg																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22008925	22008925	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018389-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			830	49	602	0	ENST00000276925.6:c.28A>C	p.Ser10Arg	p.S10R	ENST00000276925	NM_004936.3	10	Agt/Cgt																																																																															
SYK	6850	MSKCC	GRCh37	9	93629464	93629464	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018389-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			519	30	319	0	ENST00000375746.1:c.898A>G	p.Lys300Glu	p.K300E	ENST00000375746	NM_001174167.1	300	Aag/Gag																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0021793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	54	566	1	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	64	452	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86658425	86658425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	10	257	0	ENST00000274376.6:c.1390C>T	p.Arg464Cys	p.R464C	ENST00000274376	NM_002890.2	464	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0026306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	182	231	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
BLM	641	MSKCC	GRCh37	15	91292925	91292942	+	inframe_deletion	In_Frame_Del	DEL	TCTTCACCAGATTCTTTA	TCTTCACCAGATTCTTTA	-			P-0026306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	303	306	0	ENST00000355112.3:c.427_444del	p.Ser144_Ser149del	p.S144_S149del	ENST00000355112	NM_000057.2	143	TCTTCACCAGATTCTTTA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0026306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	456	360	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CIC	23152	MSKCC	GRCh37	19	42798773	42798773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	326	357	0	ENST00000575354.2:c.4345G>A	p.Val1449Met	p.V1449M	ENST00000575354	NM_015125.3	1449	Gtg/Atg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280813	41280813	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	140	140	0	ENST00000349496.5:c.2326T>C	p.Trp776Arg	p.W776R	ENST00000349496	NM_001904.3	776	Tgg/Cgg																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0026306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	61	145	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	126	171	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
XIAP	331	MSKCC	GRCh37	X	123026612	123026612	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	99	291	2	ENST00000355640.3:c.1088C>A	p.Thr363Asn	p.T363N	ENST00000355640		363	aCt/aAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	119	646	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	38	315	1	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976727	2976727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	179	659	1	ENST00000396946.4:c.1285G>A	p.Val429Ile	p.V429I	ENST00000396946	NM_032415.4	429	Gtc/Atc																																																																															
ATM	472	MSKCC	GRCh37	11	108196917	108196917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	53	574	1	ENST00000278616.4:c.6940C>T	p.Gln2314Ter	p.Q2314*	ENST00000278616	NM_000051.3	2314	Caa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911591	114911592	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGAG			P-0027881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	221	839	0	ENST00000543371.1:c.1112_1115dup	p.Cys372Ter	p.C372*	ENST00000543371	NM_001198531.1	370	gct/gcTGAGt																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813882	50813882	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1264	113	779	0	ENST00000398568.2:c.1436C>G	p.Pro479Arg	p.P479R	ENST00000398568	NM_001042412.1	479	cCt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112174597	112174597	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0027881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	248	644	0	ENST00000257430.4:c.3306C>G	p.Tyr1102Ter	p.Y1102*	ENST00000257430	NM_000038.5	1102	taC/taG																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	364	494	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
CBL	867	MSKCC	GRCh37	11	119155995	119155995	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	290	625	1	ENST00000264033.4:c.1660G>T	p.Val554Phe	p.V554F	ENST00000264033	NM_005188.3	554	Gtt/Ttt																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926856	112926856	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	95	583	0	ENST00000351677.2:c.1476A>C	p.Lys492Asn	p.K492N	ENST00000351677	NM_002834.3	492	aaA/aaC																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781381	3781381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	292	637	0	ENST00000262367.5:c.4984G>A	p.Asp1662Asn	p.D1662N	ENST00000262367	NM_004380.2	1662	Gat/Aat																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857363	9857363	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	31	401	2	ENST00000330684.3:c.4038A>T	p.Gln1346His	p.Q1346H	ENST00000330684	NM_001134407.1	1346	caA/caT																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657693	37657715	+	splice_donor_variant,intron_variant	Splice_Site	DEL	GTAACATAGTAACCAAATAAGAT	GTAACATAGTAACCAAATAAGAT	-			P-0028071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	228	377	0	ENST00000447079.4:c.2609+1_2609+23del		p.X870_splice	ENST00000447079	NM_015083.1	870																																																																																
SF3B1	23451	MSKCC	GRCh37	2	198264870	198264870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	87	485	0	ENST00000335508.6:c.2922G>T	p.Leu974Phe	p.L974F	ENST00000335508	NM_012433.2	974	ttG/ttT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187445	32187445	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	238	595	0	ENST00000375023.3:c.1434G>T	p.Glu478Asp	p.E478D	ENST00000375023	NM_004557.3	478	gaG/gaT																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470573	25470573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	161	558	1	ENST00000264709.3:c.901C>T	p.Arg301Trp	p.R301W	ENST00000264709	NM_175629.2	301	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	142	303	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
EP300	2033	MSKCC	GRCh37	22	41536164	41536164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	157	396	0	ENST00000263253.7:c.1781C>T	p.Thr594Met	p.T594M	ENST00000263253	NM_001429.3	594	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	196	537	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	66	238	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793663		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	19	561	0	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	30	112	1	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	57	287	2	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	172	531	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
POLE	5426	MSKCC	GRCh37	12	133202313	133202313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	149	474	1	ENST00000320574.5:c.6575C>T	p.Ala2192Val	p.A2192V	ENST00000320574	NM_006231.2	2192	gCg/gTg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440855	52440855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	35	433	0	ENST00000460680.1:c.649G>A	p.Ala217Thr	p.A217T	ENST00000460680	NM_004656.3	217	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	147	408	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
TET1	80312	MSKCC	GRCh37	10	70333863	70333863	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	85	341	1	ENST00000373644.4:c.1768C>T	p.Arg590Ter	p.R590*	ENST00000373644	NM_030625.2	590	Cga/Tga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299832	15299832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	38	524	1	ENST00000263388.2:c.1346G>A	p.Arg449His	p.R449H	ENST00000263388	NM_000435.2	449	cGc/cAc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	472142	472142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	146	358	0	ENST00000399788.2:c.659G>A	p.Arg220His	p.R220H	ENST00000399788	NM_001042603.1	220	cGt/cAt																																																																															
AR	367	MSKCC	GRCh37	X	66766276	66766276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	17	158	0	ENST00000374690.3:c.1288G>A	p.Ala430Thr	p.A430T	ENST00000374690	NM_000044.3	430	Gcc/Acc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131927019	131927019	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140333740		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	78	303	0	ENST00000265335.6:c.1556G>A	p.Arg519His	p.R519H	ENST00000265335		519	cGt/cAt																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428326	33428326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	156	436	0	ENST00000335858.7:c.461G>A	p.Arg154His	p.R154H	ENST00000335858	NM_133629.2	154	cGc/cAc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90633818	90633818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	142	520	0	ENST00000330062.3:c.266G>A	p.Arg89His	p.R89H	ENST00000330062	NM_002168.2	89	cGt/cAt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	128	480	0	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
PTCH1	5727	MSKCC	GRCh37	9	98215787	98215787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	174	357	1	ENST00000331920.6:c.3422C>T	p.Ala1141Val	p.A1141V	ENST00000331920	NM_000264.3	1141	gCg/gTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133219579	133219579	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs542430685		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	21	372	0	ENST00000320574.5:c.4555C>T	p.Arg1519Cys	p.R1519C	ENST00000320574	NM_006231.2	1519	Cgc/Tgc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435631	149435631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	34	497	2	ENST00000286301.3:c.2512G>A	p.Val838Ile	p.V838I	ENST00000286301	NM_005211.3	838	Gtc/Atc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448564	89448564	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	141	426	0	ENST00000336596.2:c.1528C>T	p.Arg510Ter	p.R510*	ENST00000336596	NM_005233.5	510	Cga/Tga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	66	282	0	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739479	145739479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748941688		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	140	443	0	ENST00000428558.2:c.1891C>T	p.Arg631Cys	p.R631C	ENST00000428558	NM_004260.3	631	Cgc/Tgc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562477	21562477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	14	128	0	ENST00000382592.4:c.1442C>T	p.Ala481Val	p.A481V	ENST00000382592	NM_014572.2	481	gCg/gTg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066534	94066534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	106	342	1	ENST00000369303.4:c.1225G>A	p.Ala409Thr	p.A409T	ENST00000369303	NM_004440.3	409	Gct/Act																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	170	319	0	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
ROS1	6098	MSKCC	GRCh37	6	117714409	117714409	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	35	371	0	ENST00000368508.3:c.1240del	p.Ile414LeufsTer14	p.I414Lfs*14	ENST00000368508	NM_002944.2	414	Att/tt																																																																															
NF1	4763	MSKCC	GRCh37	17	29552222	29552222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	125	412	0	ENST00000358273.4:c.1955G>A	p.Arg652His	p.R652H	ENST00000358273	NM_001042492.2	652	cGt/cAt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477160	67477160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	134	389	1	ENST00000327367.4:c.967C>T	p.Arg323Cys	p.R323C	ENST00000327367	NM_005902.3	323	Cgc/Tgc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098591	11098591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	165	437	0	ENST00000344626.4:c.1109G>A	p.Arg370His	p.R370H	ENST00000344626	NM_003072.3	370	cGc/cAc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95595941	95595941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	101	392	0	ENST00000343455.3:c.602G>A	p.Arg201His	p.R201H	ENST00000343455	NM_177438.2	201	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831953	72831953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	60	580	0	ENST00000268489.5:c.4628G>A	p.Arg1543His	p.R1543H	ENST00000268489	NM_006885.3	1543	cGc/cAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286237	66286238	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	89	337	0	ENST00000273854.3:c.1448dup	p.Asn483LysfsTer21	p.N483Kfs*21	ENST00000273854	NM_004439.5	483	aac/aaAc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641487	23641487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	143	564	0	ENST00000261584.4:c.1988G>A	p.Arg663His	p.R663H	ENST00000261584	NM_024675.3	663	cGc/cAc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71090524	71090524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	82	276	0	ENST00000318789.4:c.824C>T	p.Ala275Val	p.A275V	ENST00000318789	NM_032682.5	275	gCc/gTc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740840	58740840	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149137187		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	157	417	0	ENST00000305921.3:c.1745G>A	p.Arg582His	p.R582H	ENST00000305921	NM_003620.3	582	cGc/cAc																																																																															
BCL10	8915	MSKCC	GRCh37	1	85736510	85736511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs387906351		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	86	293	1	ENST00000370580.1:c.136dup	p.Ile46AsnfsTer4	p.I46Nfs*4	ENST00000370580	NM_003921.4	46	ata/aAta																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041518	14041518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	98	328	1	ENST00000311895.7:c.2065C>T	p.Arg689Cys	p.R689C	ENST00000311895	NM_005236.2	689	Cgt/Tgt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163554	32163554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	105	472	1	ENST00000375023.3:c.5672del	p.Gly1891AlafsTer13	p.G1891Afs*13	ENST00000375023	NM_004557.3	1891	gGc/gc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42839743	42839743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	179	503	1	ENST00000398585.3:c.1496G>A	p.Gly499Asp	p.G499D	ENST00000398585	NM_001135099.1	499	gGt/gAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134230	11134230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	139	485	1	ENST00000344626.4:c.2896C>T	p.Arg966Trp	p.R966W	ENST00000344626	NM_003072.3	966	Cgg/Tgg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134885807	134885807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	113	424	0	ENST00000398015.3:c.1718C>T	p.Ala573Val	p.A573V	ENST00000398015	NM_004441.4	573	gCt/gTt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505508	25505508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	34	472	2	ENST00000264709.3:c.250G>A	p.Ala84Thr	p.A84T	ENST00000264709	NM_175629.2	84	Gcc/Acc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205667	128205667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	111	431	0	ENST00000341105.2:c.208G>A	p.Val70Ile	p.V70I	ENST00000341105	NM_032638.4	70	Gtc/Atc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112422	115112422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	135	395	0	ENST00000257566.3:c.1318G>A	p.Ala440Thr	p.A440T	ENST00000257566	NM_016569.3	440	Gcc/Acc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955111	17955112	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	163	571	0	ENST00000458235.1:c.115dupC	p.Gln39ProfsTer13	p.Q39Pfs*13	ENST00000458235	NM_000215.3	39	cag/cCag																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631917	90631918	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	167	482	5	ENST00000330062.3:c.435dupG	p.Thr146AspfsTer126	p.T146Dfs*126	ENST00000330062	NM_002168.2	145	-/G																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228613001	228613001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	95	294	0	ENST00000366696.1:c.26G>A	p.Arg9His	p.R9H	ENST00000366696	NM_003493.2	9	cGc/cAc																																																																															
E2F3	1871	MSKCC	GRCh37	6	20481461	20481461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	75	245	0	ENST00000346618.3:c.530C>T	p.Thr177Met	p.T177M	ENST00000346618	NM_001949.4	177	aCg/aTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88671959	88671959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	94	321	1	ENST00000360948.2:c.1211C>T	p.Thr404Met	p.T404M	ENST00000360948	NM_001012338.2	404	aCg/aTg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24167550	24167550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	157	446	1	ENST00000263121.7:c.934G>A	p.Ala312Thr	p.A312T	ENST00000263121	NM_003073.3	312	Gca/Aca																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277225	41277225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	20	239	0	ENST00000349496.5:c.1694G>A	p.Arg565His	p.R565H	ENST00000349496	NM_001904.3	565	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101690	27101690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	145	627	1	ENST00000324856.7:c.4972C>T	p.Arg1658Trp	p.R1658W	ENST00000324856	NM_006015.4	1658	Cgg/Tgg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123217306	123217306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	169	245	0	ENST00000218089.9:c.2960C>T	p.Pro987Leu	p.P987L	ENST00000218089	NM_001042749.1	987	cCg/cTg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729844	41729844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	79	301	0	ENST00000242208.4:c.685C>T	p.Arg229Trp	p.R229W	ENST00000242208	NM_002192.2	229	Cgg/Tgg																																																																															
PARP1	142	MSKCC	GRCh37	1	226552710	226552710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	102	306	0	ENST00000366794.5:c.2651C>T	p.Ala884Val	p.A884V	ENST00000366794	NM_001618.3	884	gCg/gTg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129418	64129418	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	184	535	1	ENST00000334205.4:c.850C>T	p.Arg284Ter	p.R284*	ENST00000334205	NM_003942.2	284	Cga/Tga																																																																															
FANCC	2176	MSKCC	GRCh37	9	97912349	97912349	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182879858		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	131	311	2	ENST00000289081.3:c.542C>T	p.Ala181Val	p.A181V	ENST00000289081	NM_000136.2	181	gCg/gTg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18277075	18277075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	132	419	0	ENST00000222254.8:c.1522C>T	p.Arg508Cys	p.R508C	ENST00000222254	NM_005027.3	508	Cgc/Tgc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185181431	185181431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	142	395	0	ENST00000265026.3:c.1372C>T	p.Arg458Cys	p.R458C	ENST00000265026	NM_004721.4	458	Cgc/Tgc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911260	29911260	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	16	280	1	ENST00000376809.5:c.559A>G	p.Thr187Ala	p.T187A	ENST00000376809	NM_002116.7	187	Acg/Gcg																																																																															
MITF	4286	MSKCC	GRCh37	3	70014298	70014298	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142372494		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	135	451	0	ENST00000352241.4:c.1462G>A	p.Gly488Ser	p.G488S	ENST00000352241	NM_198159.2	488	Ggt/Agt																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868072	56868072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	26	316	0	ENST00000308159.5:c.1570C>T	p.Arg524Trp	p.R524W	ENST00000308159	NM_014669.4	524	Cgg/Tgg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509661	106509661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	39	444	1	ENST00000359195.3:c.1655G>A	p.Arg552His	p.R552H	ENST00000359195	NM_002649.2	552	cGc/cAc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095913	178095914	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	105	352	2	ENST00000397062.3:c.1417dup	p.Ile473AsnfsTer3	p.I473Nfs*3	ENST00000397062	NM_006164.4	473	atc/aAtc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28601228	28601228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	151	379	0	ENST00000241453.7:c.2204C>T	p.Ser735Phe	p.S735F	ENST00000241453	NM_004119.2	735	tCc/tTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219934	36219934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	32	534	0	ENST00000222270.7:c.4736G>A	p.Arg1579His	p.R1579H	ENST00000222270	NM_014727.1	1579	cGt/cAt																																																																															
HRAS	3265	MSKCC	GRCh37	11	533839	533839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	56	552	0	ENST00000311189.7:c.217C>T	p.Arg73Cys	p.R73C	ENST00000311189		73	Cgc/Tgc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46727002	46727002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	120	365	1	ENST00000371975.4:c.836G>A	p.Arg279His	p.R279H	ENST00000371975	NM_003579.3	279	cGc/cAc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52705201	52705201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	104	287	1	ENST00000322088.6:c.83G>A	p.Arg28His	p.R28H	ENST00000322088	NM_014225.5	28	cGc/cAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939413	71939413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148394356		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	70	582	0	ENST00000298229.2:c.268C>T	p.Arg90Cys	p.R90C	ENST00000298229	NM_001567.3	90	Cgc/Tgc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45396936	45396936	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	22	224	0	ENST00000262160.6:c.237-1G>A		p.X79_splice	ENST00000262160	NM_005901.5	79																																																																																
RET	5979	MSKCC	GRCh37	10	43606811	43606811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	164	576	2	ENST00000355710.3:c.1420C>T	p.Arg474Trp	p.R474W	ENST00000355710	NM_020975.4	474	Cgg/Tgg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86686625	86686626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	81	260	0	ENST00000274376.6:c.3074dup	p.Leu1026AlafsTer20	p.L1026Afs*20	ENST00000274376	NM_002890.2	1023	-/A																																																																															
NF1	4763	MSKCC	GRCh37	17	29550577	29550577	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	88	253	0	ENST00000358273.4:c.1841del	p.Asn614IlefsTer17	p.N614Ifs*17	ENST00000358273	NM_001042492.2	613	Aaa/aa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95574405	95574405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	101	239	1	ENST00000343455.3:c.2462G>A	p.Arg821His	p.R821H	ENST00000343455	NM_177438.2	821	cGc/cAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524960	187524960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	168	502	0	ENST00000441802.2:c.10720G>A	p.Val3574Met	p.V3574M	ENST00000441802	NM_005245.3	3574	Gtg/Atg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753276	42753276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	49	563	0	ENST00000222329.4:c.988G>A	p.Ala330Thr	p.A330T	ENST00000222329	NM_006494.2	330	Gcc/Acc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112326	115112326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	60	149	0	ENST00000257566.3:c.1414G>A	p.Ala472Thr	p.A472T	ENST00000257566	NM_016569.3	472	Gcg/Acg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716301	52716301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	51	419	0	ENST00000322088.6:c.745C>T	p.Arg249Cys	p.R249C	ENST00000322088	NM_014225.5	249	Cgc/Tgc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94911882	94911882	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	170	452	0	ENST00000536441.1:c.1048C>T	p.Arg350Ter	p.R350*	ENST00000536441	NM_144665.3	350	Cga/Tga																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520202	176520202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	196	596	1	ENST00000292408.4:c.1121C>T	p.Ala374Val	p.A374V	ENST00000292408	NM_213647.1	374	gCg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836295	151836295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	149	360	1	ENST00000262189.6:c.14510C>T	p.Ala4837Val	p.A4837V	ENST00000262189	NM_170606.2	4837	gCg/gTg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712907	43712907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	140	454	0	ENST00000382044.4:c.4277G>A	p.Gly1426Asp	p.G1426D	ENST00000382044	NM_001141980.1	1426	gGc/gAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023326	27023327	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	55	163	0	ENST00000324856.7:c.437dup	p.Ala147SerfsTer253	p.A147Sfs*253	ENST00000324856	NM_006015.4	144	-/C																																																																															
CARM1	10498	MSKCC	GRCh37	19	11032374	11032374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	46	525	0	ENST00000327064.4:c.1768G>A	p.Ala590Thr	p.A590T	ENST00000327064	NM_199141.1	590	Gcc/Acc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164838	36164838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1282562937		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	145	571	0	ENST00000300305.3:c.1037G>A	p.Arg346His	p.R346H	ENST00000300305		346	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108205805	108205805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	34	352	0	ENST00000278616.4:c.8120C>T	p.Ser2707Phe	p.S2707F	ENST00000278616	NM_000051.3	2707	tCc/tTc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30093411	30093411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201154555		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	126	418	1	ENST00000331968.5:c.1852C>T	p.Arg618Ter	p.R618*	ENST00000331968	NM_002742.2	618	Cga/Tga																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781907	9781907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	131	503	2	ENST00000377346.4:c.2044C>A	p.Leu682Met	p.L682M	ENST00000377346	NM_005026.3	682	Ctg/Atg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11298063	11298063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	123	406	0	ENST00000361445.4:c.2045G>A	p.Arg682His	p.R682H	ENST00000361445	NM_004958.3	682	cGc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260692	16260692	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201348264		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	149	506	0	ENST00000375759.3:c.7957G>A	p.Ala2653Thr	p.A2653T	ENST00000375759	NM_015001.2	2653	Gca/Aca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262304	16262304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	49	176	0	ENST00000375759.3:c.9569C>T	p.Thr3190Ile	p.T3190I	ENST00000375759	NM_015001.2	3190	aCt/aTt																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363267	40363267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	166	421	2	ENST00000397332.2:c.962G>A	p.Arg321His	p.R321H	ENST00000397332	NM_001033082.2	321	cGc/cAc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797401	45797401	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35352891		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	145	530	0	ENST00000372115.3:c.1076C>T	p.Ala359Val	p.A359V	ENST00000372115	NM_001048171.1	359	gCc/gTc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400916	72400916	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	92	354	0	ENST00000357731.5:c.255G>A	p.Trp85Ter	p.W85*	ENST00000357731	NM_173808.2	85	tgG/tgA																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166418	118166418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	108	371	1	ENST00000369448.3:c.928C>T	p.Leu310Phe	p.L310F	ENST00000369448	NM_017709.3	310	Ctt/Ttt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120478223	120478223	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	96	319	0	ENST00000256646.2:c.3527T>C	p.Val1176Ala	p.V1176A	ENST00000256646	NM_024408.3	1176	gTc/gCc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844722	156844722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	179	597	2	ENST00000524377.1:c.1276G>A	p.Val426Ile	p.V426I	ENST00000524377	NM_002529.3	426	Gtc/Atc																																																																															
FH	2271	MSKCC	GRCh37	1	241683013	241683013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	77	411	0	ENST00000366560.3:c.10G>A	p.Ala4Thr	p.A4T	ENST00000366560	NM_000143.3	4	Gca/Aca																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246093240	246093240	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	110	371	0	ENST00000388985.4:c.532-1G>A		p.X178_splice	ENST00000388985		178																																																																																
TET1	80312	MSKCC	GRCh37	10	70450663	70450663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	119	420	0	ENST00000373644.4:c.5503C>T	p.Pro1835Ser	p.P1835S	ENST00000373644	NM_030625.2	1835	Cca/Tca																																																																															
HRAS	3265	MSKCC	GRCh37	11	532716	532716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	151	545	0	ENST00000311189.7:c.490C>T	p.Arg164Trp	p.R164W	ENST00000311189		164	Cgg/Tgg																																																																															
PGR	5241	MSKCC	GRCh37	11	100933244	100933244	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	37	423	0	ENST00000325455.5:c.2146A>G	p.Thr716Ala	p.T716A	ENST00000325455	NM_001202474.3	716	Aca/Gca																																																																															
ATM	472	MSKCC	GRCh37	11	108098537	108098537	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	117	249	0	ENST00000278616.4:c.107A>G	p.Asp36Gly	p.D36G	ENST00000278616	NM_000051.3	36	gAt/gGt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118362551	118362551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	128	350	0	ENST00000534358.1:c.4912G>A	p.Ala1638Thr	p.A1638T	ENST00000534358	NM_005933.3	1638	Gcc/Acc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	422242	422242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	134	456	1	ENST00000399788.2:c.3016G>A	p.Ala1006Thr	p.A1006T	ENST00000399788	NM_001042603.1	1006	Gct/Act																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231492	46231492	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	83	272	0	ENST00000334344.6:c.1330+2T>C		p.X444_splice	ENST00000334344	NM_152641.2	444																																																																																
ARID2	196528	MSKCC	GRCh37	12	46244743	46244743	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	152	449	0	ENST00000334344.6:c.2837T>A	p.Ile946Asn	p.I946N	ENST00000334344	NM_152641.2	946	aTt/aAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420090	49420090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	25	431	1	ENST00000301067.7:c.15659G>A	p.Arg5220His	p.R5220H	ENST00000301067	NM_003482.3	5220	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420657	49420657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	105	428	0	ENST00000301067.7:c.15092G>A	p.Arg5031His	p.R5031H	ENST00000301067	NM_003482.3	5031	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49442973	49442973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	153	436	0	ENST00000301067.7:c.3935G>A	p.Arg1312His	p.R1312H	ENST00000301067	NM_003482.3	1312	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445592	49445592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	153	777	1	ENST00000301067.7:c.1874G>A	p.Arg625His	p.R625H	ENST00000301067	NM_003482.3	625	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447305	49447305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	156	456	0	ENST00000301067.7:c.793C>T	p.Arg265Cys	p.R265C	ENST00000301067	NM_003482.3	265	Cgt/Tgt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856566	111856566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	13	177	0	ENST00000341259.2:c.617C>T	p.Ala206Val	p.A206V	ENST00000341259	NM_005475.2	206	gCc/gTc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856569	111856569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	47	174	0	ENST00000341259.2:c.620A>G	p.Asp207Gly	p.D207G	ENST00000341259	NM_005475.2	207	gAc/gGc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112230	115112230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	83	286	0	ENST00000257566.3:c.1510G>A	p.Ala504Thr	p.A504T	ENST00000257566	NM_016569.3	504	Gcc/Acc																																																																															
SETD8	387893	MSKCC	GRCh37	12	123879761	123879761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	18	180	1	ENST00000330479.4:c.457G>A	p.Ala153Thr	p.A153T	ENST00000330479	NM_020382.3	153	Gcc/Acc																																																																															
POLE	5426	MSKCC	GRCh37	12	133250204	133250204	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	134	458	0	ENST00000320574.5:c.1316T>C	p.Leu439Pro	p.L439P	ENST00000320574	NM_006231.2	439	cTa/cCa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28903752	28903752	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	89	369	0	ENST00000282397.4:c.2707G>A	p.Gly903Arg	p.G903R	ENST00000282397	NM_002019.4	903	Ggg/Agg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434772	110434772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	141	595	0	ENST00000375856.3:c.3629C>T	p.Ala1210Val	p.A1210V	ENST00000375856	NM_003749.2	1210	gCg/gTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435255	110435255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	77	252	0	ENST00000375856.3:c.3146C>T	p.Ala1049Val	p.A1049V	ENST00000375856	NM_003749.2	1049	gCc/gTc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066960	30066960	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	90	331	0	ENST00000331968.5:c.2171A>G	p.Lys724Arg	p.K724R	ENST00000331968	NM_002742.2	724	aAa/aGa																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986629	36986629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	12	156	0	ENST00000354822.5:c.1060G>A	p.Ala354Thr	p.A354T	ENST00000354822	NM_001079668.2	354	Gca/Aca																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986947	36986947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	163	439	0	ENST00000354822.5:c.742C>T	p.Arg248Cys	p.R248C	ENST00000354822	NM_001079668.2	248	Cgc/Tgc																																																																															
AKT1	207	MSKCC	GRCh37	14	105239893	105239893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	140	428	1	ENST00000349310.3:c.727C>T	p.Arg243Cys	p.R243C	ENST00000349310	NM_001014432.1	243	Cgt/Tgt																																																																															
AKT1	207	MSKCC	GRCh37	14	105243056	105243056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	170	577	1	ENST00000349310.3:c.227G>A	p.Arg76His	p.R76H	ENST00000349310	NM_001014432.1	76	cGc/cAc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43707942	43707942	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	196	524	0	ENST00000382044.4:c.4939T>G	p.Ser1647Ala	p.S1647A	ENST00000382044	NM_001141980.1	1647	Tcc/Gcc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457360	67457360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	46	470	0	ENST00000327367.4:c.334G>A	p.Ala112Thr	p.A112T	ENST00000327367	NM_005902.3	112	Gcc/Acc																																																																															
CD276	80381	MSKCC	GRCh37	15	73994796	73994796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	125	460	1	ENST00000318443.5:c.280G>A	p.Ala94Thr	p.A94T	ENST00000318443	NM_001024736.1	94	Gcc/Acc																																																																															
BLM	641	MSKCC	GRCh37	15	91304100	91304101	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	47	545	1	ENST00000355112.3:c.1500dup	p.Val501CysfsTer3	p.V501Cfs*3	ENST00000355112	NM_000057.2	499	-/T																																																																															
TSC2	7249	MSKCC	GRCh37	16	2126103	2126103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	202	579	0	ENST00000219476.3:c.2674G>A	p.Val892Ile	p.V892I	ENST00000219476	NM_000548.3	892	Gtc/Atc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223286	2223286	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150194608		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	164	627	0	ENST00000326181.6:c.898G>A	p.Glu300Lys	p.E300K	ENST00000326181	NM_032271.2	300	Gag/Aag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3642800	3642800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	43	566	0	ENST00000294008.3:c.2227G>A	p.Val743Met	p.V743M	ENST00000294008	NM_032444.2	743	Gtg/Atg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778323	3778323	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146514877		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	104	454	0	ENST00000262367.5:c.6725C>T	p.Pro2242Leu	p.P2242L	ENST00000262367	NM_004380.2	2242	cCg/cTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857848	9857848	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	108	428	0	ENST00000330684.3:c.3553A>G	p.Lys1185Glu	p.K1185E	ENST00000330684	NM_001134407.1	1185	Aaa/Gaa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934602	9934602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	112	384	0	ENST00000330684.3:c.1553G>A	p.Arg518His	p.R518H	ENST00000330684	NM_001134407.1	518	cGt/cAt																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14042019	14042019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	36	295	0	ENST00000311895.7:c.2566C>T	p.Pro856Ser	p.P856S	ENST00000311895	NM_005236.2	856	Cca/Tca																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30133247	30133247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	155	492	0	ENST00000263025.4:c.251G>A	p.Arg84His	p.R84H	ENST00000263025	NM_002746.2	84	cGc/cAc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67650683	67650683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	189	415	0	ENST00000264010.4:c.988G>A	p.Ala330Thr	p.A330T	ENST00000264010	NM_006565.3	330	Gcc/Acc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67660580	67660580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	178	480	1	ENST00000264010.4:c.1480C>T	p.Arg494Cys	p.R494C	ENST00000264010	NM_006565.3	494	Cgc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828486	72828486	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	158	453	0	ENST00000268489.5:c.8095G>T	p.Gly2699Ter	p.G2699*	ENST00000268489	NM_006885.3	2699	Gga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831656	72831656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	28	474	0	ENST00000268489.5:c.4925G>A	p.Ser1642Asn	p.S1642N	ENST00000268489	NM_006885.3	1642	aGc/aAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993822	72993822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	18	385	0	ENST00000268489.5:c.223G>A	p.Ala75Thr	p.A75T	ENST00000268489	NM_006885.3	75	Gcc/Acc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347980	89347980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	189	642	1	ENST00000301030.4:c.4970C>T	p.Ser1657Leu	p.S1657L	ENST00000301030	NM_001256183.1	1657	tCg/tTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348909	89348911	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	175	695	0	ENST00000301030.4:c.4039_4041del	p.Lys1347del	p.K1347del	ENST00000301030	NM_001256183.1	1347	AAG/-																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217012	7217012	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	136	368	0	ENST00000380728.2:c.509C>A	p.Ala170Asp	p.A170D	ENST00000380728		170	gCt/gAt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16042379	16042379	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	128	421	0	ENST00000268712.3:c.1295A>C	p.Lys432Thr	p.K432T	ENST00000268712	NM_006311.3	432	aAa/aCa																																																																															
NF1	4763	MSKCC	GRCh37	17	29587387	29587388	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	86	279	0	ENST00000358273.4:c.4436dup	p.Leu1480ProfsTer2	p.L1480Pfs*2	ENST00000358273	NM_001042492.2	1477	-/T																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244952	41244952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	40	547	0	ENST00000357654.3:c.2596C>T	p.Arg866Cys	p.R866C	ENST00000357654	NM_007294.3	866	Cgc/Tgc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245476	41245476	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	226	669	0	ENST00000357654.3:c.2072G>T	p.Arg691Ile	p.R691I	ENST00000357654	NM_007294.3	691	aGa/aTa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41251812	41251812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	164	497	1	ENST00000357654.3:c.527C>T	p.Thr176Met	p.T176M	ENST00000357654	NM_007294.3	176	aCg/aTg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763428	59763428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	157	513	0	ENST00000259008.2:c.2674C>T	p.Leu892Phe	p.L892F	ENST00000259008	NM_032043.2	892	Ctt/Ttt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78933909	78933909	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1342049284		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	134	479	0	ENST00000306801.3:c.3509C>T	p.Thr1170Met	p.T1170M	ENST00000306801	NM_020761.2	1170	aCg/aTg																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110201	3110201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	144	548	0	ENST00000078429.4:c.191G>A	p.Gly64Asp	p.G64D	ENST00000078429	NM_002067.2	64	gGc/gAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244406	5244406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	45	594	0	ENST00000357368.4:c.1076C>A	p.Pro359His	p.P359H	ENST00000357368	NM_002850.3	359	cCt/cAt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296433	15296433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	206	696	0	ENST00000263388.2:c.2009G>A	p.Gly670Asp	p.G670D	ENST00000263388	NM_000435.2	670	gGt/gAt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298125	15298125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	148	558	0	ENST00000263388.2:c.1631G>A	p.Arg544His	p.R544H	ENST00000263388	NM_000435.2	544	cGc/cAc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349877	15349877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	97	367	1	ENST00000263377.2:c.3775C>T	p.Arg1259Cys	p.R1259C	ENST00000263377	NM_058243.2	1259	Cgc/Tgc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354248	15354248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	48	615	0	ENST00000263377.2:c.2632G>A	p.Ala878Thr	p.A878T	ENST00000263377	NM_058243.2	878	Gct/Act																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18276985	18276985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	124	353	0	ENST00000222254.8:c.1432C>T	p.Arg478Cys	p.R478C	ENST00000222254	NM_005027.3	478	Cgt/Tgt																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965800	18965800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	169	561	0	ENST00000262803.5:c.1378C>T	p.Pro460Ser	p.P460S	ENST00000262803	NM_002911.3	460	Ccc/Tcc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257423	19257423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	203	713	0	ENST00000162023.5:c.710C>T	p.Ser237Phe	p.S237F	ENST00000162023		237	tCc/tTc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30303919	30303919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	144	426	0	ENST00000262643.3:c.155C>T	p.Thr52Met	p.T52M	ENST00000262643	NM_001238.2	52	aCg/aTg																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792902	33792902	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	16	65	0	ENST00000498907.2:c.419A>G	p.Asp140Gly	p.D140G	ENST00000498907	NM_004364.3	140	gAc/gGc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211402	36211402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	61	689	0	ENST00000222270.7:c.1153G>A	p.Ala385Thr	p.A385T	ENST00000222270	NM_014727.1	385	Gct/Act																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214711	36214711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	109	425	0	ENST00000222270.7:c.3137G>A	p.Arg1046His	p.R1046H	ENST00000222270	NM_014727.1	1046	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219692	36219692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	186	534	1	ENST00000222270.7:c.4589C>T	p.Ala1530Val	p.A1530V	ENST00000222270	NM_014727.1	1530	gCg/gTg																																																																															
AXL	558	MSKCC	GRCh37	19	41737106	41737106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	189	536	0	ENST00000301178.4:c.686G>A	p.Arg229His	p.R229H	ENST00000301178	NM_021913.4	229	cGt/cAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42791215	42791215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	166	535	0	ENST00000575354.2:c.275C>A	p.Ala92Asp	p.A92D	ENST00000575354	NM_015125.3	92	gCt/gAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42795541	42795541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	166	588	1	ENST00000575354.2:c.2621G>A	p.Gly874Asp	p.G874D	ENST00000575354	NM_015125.3	874	gGc/gAc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855885	45855885	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	158	563	0	ENST00000391945.4:c.1925A>G	p.Asp642Gly	p.D642G	ENST00000391945	NM_000400.3	642	gAc/gGc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470548	25470548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	173	537	1	ENST00000264709.3:c.926G>A	p.Arg309His	p.R309H	ENST00000264709	NM_175629.2	309	cGc/cAc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607858	46607858	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	144	507	0	ENST00000263734.3:c.2045+2T>C		p.X682_splice	ENST00000263734	NM_001430.4	682																																																																																
MSH2	4436	MSKCC	GRCh37	2	47643569	47643569	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	95	381	0	ENST00000233146.2:c.1076+1G>A		p.X359_splice	ENST00000233146	NM_000251.2	359																																																																																
MSH6	2956	MSKCC	GRCh37	2	48027728	48027728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	65	320	0	ENST00000234420.5:c.2606G>A	p.Cys869Tyr	p.C869Y	ENST00000234420	NM_000179.2	869	tGt/tAt																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96920586	96920586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	30	299	1	ENST00000258439.3:c.394G>A	p.Ala132Thr	p.A132T	ENST00000258439	NM_001193304.2	132	Gcc/Acc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99170798	99170798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	111	419	0	ENST00000074304.5:c.1427C>T	p.Ala476Val	p.A476V	ENST00000074304	NM_001134224.1	476	gCt/gTt																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128047032	128047032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	129	429	0	ENST00000285398.2:c.703G>A	p.Val235Met	p.V235M	ENST00000285398	NM_000122.1	235	Gtg/Atg																																																																															
CASP8	841	MSKCC	GRCh37	2	202131327	202131327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	36	402	0	ENST00000358485.4:c.295G>A	p.Asp99Asn	p.D99N	ENST00000358485	NM_001080125.1	99	Gat/Aat																																																																															
CASP8	841	MSKCC	GRCh37	2	202136246	202136246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	87	395	1	ENST00000358485.4:c.490C>T	p.Leu164Phe	p.L164F	ENST00000358485	NM_001080125.1	164	Ctc/Ttc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660201	227660201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	148	492	1	ENST00000305123.5:c.3254C>A	p.Ala1085Asp	p.A1085D	ENST00000305123	NM_005544.2	1085	gCc/gAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022390	31022391	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	52	229	0	ENST00000375687.4:c.1879dup	p.Ala627GlyfsTer8	p.A627Gfs*8	ENST00000375687	NM_015338.5	625	-/G																																																																															
SRC	6714	MSKCC	GRCh37	20	36031768	36031768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	113	443	0	ENST00000358208.4:c.1597G>A	p.Gly533Arg	p.G533R	ENST00000358208		533	Ggg/Agg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877345	40877345	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	100	334	0	ENST00000373198.4:c.2351T>C	p.Met784Thr	p.M784T	ENST00000373198	NM_133170.3	784	aTg/aCg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265129	46265129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	112	348	0	ENST00000371998.3:c.1999G>A	p.Val667Ile	p.V667I	ENST00000371998		667	Gta/Ata																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866397	42866397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	173	612	0	ENST00000398585.3:c.235G>A	p.Ala79Thr	p.A79T	ENST00000398585	NM_001135099.1	79	Gct/Act																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44514879	44514879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	123	340	0	ENST00000291552.4:c.368C>T	p.Ala123Val	p.A123V	ENST00000291552	NM_006758.2	123	gCg/gTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715729	30715729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	86	267	0	ENST00000359013.4:c.1462G>A	p.Ala488Thr	p.A488T	ENST00000359013	NM_001024847.2	488	Gca/Aca																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163989	47163989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	90	280	0	ENST00000409792.3:c.2137G>A	p.Ala713Thr	p.A713T	ENST00000409792	NM_014159.6	713	Gca/Aca																																																																															
MST1	4485	MSKCC	GRCh37	3	49722303	49722303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	21	69	0	ENST00000449682.2:c.1637C>T	p.Thr546Met	p.T546M	ENST00000449682	NM_020998.3	546	aCg/aTg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205093	128205093	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	142	541	0	ENST00000341105.2:c.348G>A	p.Trp116Ter	p.W116*	ENST00000341105	NM_032638.4	116	tgG/tgA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952019	178952019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	9	374	0	ENST00000263967.3:c.3074C>T	p.Thr1025Ile	p.T1025I	ENST00000263967	NM_006218.2	1025	aCc/aTc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191161	185191161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	102	346	0	ENST00000265026.3:c.2042G>A	p.Ser681Asn	p.S681N	ENST00000265026	NM_004721.4	681	aGc/aAc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803663	1803663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	208	645	0	ENST00000260795.2:c.841G>A	p.Ala281Thr	p.A281T	ENST00000260795		281	Gca/Aca																																																																															
KDR	3791	MSKCC	GRCh37	4	55963921	55963921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	24	311	0	ENST00000263923.4:c.2522G>A	p.Gly841Asp	p.G841D	ENST00000263923	NM_002253.2	841	gGc/gAc																																																																															
KDR	3791	MSKCC	GRCh37	4	55972857	55972858	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	79	328	0	ENST00000263923.4:c.1532dup	p.Asn511LysfsTer21	p.N511Kfs*21	ENST00000263923	NM_002253.2	511	aac/aaAc																																																																															
KDR	3791	MSKCC	GRCh37	4	55973936	55973936	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	134	380	0	ENST00000263923.4:c.1380G>A	p.Trp460Ter	p.W460*	ENST00000263923	NM_002253.2	460	tgG/tgA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467764	66467764	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	76	284	0	ENST00000273854.3:c.505A>T	p.Asn169Tyr	p.N169Y	ENST00000273854	NM_004439.5	169	Aac/Tac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535303	66535303	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	136	504	0	ENST00000273854.3:c.158T>C	p.Leu53Pro	p.L53P	ENST00000273854	NM_004439.5	53	cTc/cCc																																																																															
TET2	54790	MSKCC	GRCh37	4	106196936	106196936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	82	262	0	ENST00000380013.4:c.5269C>T	p.His1757Tyr	p.H1757Y	ENST00000380013	NM_001127208.2	1757	Cat/Tat																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143159144	143159144	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	63	249	0	ENST00000262992.4:c.709A>G	p.Lys237Glu	p.K237E	ENST00000262992	NM_001101669.1	237	Aaa/Gaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153253808	153253808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	97	316	0	ENST00000281708.4:c.925C>T	p.Arg309Cys	p.R309C	ENST00000281708	NM_033632.3	309	Cgc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542345	187542345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	79	307	0	ENST00000441802.2:c.5395G>A	p.Ala1799Thr	p.A1799T	ENST00000441802	NM_005245.3	1799	Gct/Act																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628454	187628454	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	178	525	0	ENST00000441802.2:c.2528A>G	p.Gln843Arg	p.Q843R	ENST00000441802	NM_005245.3	843	cAg/cGg																																																																															
TERT	7015	MSKCC	GRCh37	5	1271300	1271300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	158	481	2	ENST00000310581.5:c.2402C>T	p.Ala801Val	p.A801V	ENST00000310581	NM_198253.2	801	gCc/gTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294643	1294643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	50	411	0	ENST00000310581.5:c.358C>T	p.Arg120Cys	p.R120C	ENST00000310581	NM_198253.2	120	Cgc/Tgc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31472277	31472277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	155	534	0	ENST00000344624.3:c.2134G>A	p.Ala712Thr	p.A712T	ENST00000344624		712	Gcc/Acc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871223	35871223	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	98	361	0	ENST00000303115.3:c.445A>G	p.Thr149Ala	p.T149A	ENST00000303115	NM_002185.3	149	Aca/Gca																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950189	38950189	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	66	426	0	ENST00000357387.3:c.3761G>A	p.Ser1254Asn	p.S1254N	ENST00000357387	NM_152756.3	1254	aGc/aAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168726	56168727	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	112	307	0	ENST00000399503.3:c.1583dup	p.Leu528PhefsTer13	p.L528Ffs*13	ENST00000399503	NM_005921.1	527	cct/ccTt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751532	57751532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	78	246	0	ENST00000274289.3:c.1459C>T	p.Pro487Ser	p.P487S	ENST00000274289	NM_006622.3	487	Ccg/Tcg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67590410	67590411	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	82	245	0	ENST00000274335.5:c.1477dup	p.Ile493AsnfsTer3	p.I493Nfs*3	ENST00000274335		491	ata/atAa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449487	149449487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	29	477	1	ENST00000286301.3:c.1459G>A	p.Ala487Thr	p.A487T	ENST00000286301	NM_005211.3	487	Gcc/Acc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149509342	149509342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	23	333	0	ENST00000261799.4:c.1557G>T	p.Gln519His	p.Q519H	ENST00000261799	NM_002609.3	519	caG/caT																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519324	176519324	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	97	360	1	ENST00000292408.4:c.730C>T	p.Arg244Trp	p.R244W	ENST00000292408	NM_213647.1	244	Cgg/Tgg																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839988	27839988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	24	393	2	ENST00000328488.2:c.106G>A	p.Val36Ile	p.V36I	ENST00000328488	NM_003533.2	36	Gtc/Atc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671238	30671238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	212	561	0	ENST00000376406.3:c.5639G>A	p.Ser1880Asn	p.S1880N	ENST00000376406	NM_014641.2	1880	aGc/aAc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166284	32166284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	183	542	0	ENST00000375023.3:c.4670G>A	p.Gly1557Asp	p.G1557D	ENST00000375023	NM_004557.3	1557	gGc/gAc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187513	32187513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	205	565	0	ENST00000375023.3:c.1366C>T	p.Pro456Ser	p.P456S	ENST00000375023	NM_004557.3	456	Cct/Tct																																																																															
TAP1	6890	MSKCC	GRCh37	6	32813522	32813522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	28	359	0	ENST00000354258.4:c.2261G>A	p.Arg754His	p.R754H	ENST00000354258	NM_000593.5	754	cGc/cAc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818131	32818131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	169	537	0	ENST00000354258.4:c.1394C>T	p.Ala465Val	p.A465V	ENST00000354258	NM_000593.5	465	gCt/gTt																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43752294	43752294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	27	367	0	ENST00000523873.1:c.694C>T	p.Arg232Trp	p.R232W	ENST00000523873		232	Cgg/Tgg																																																																															
FYN	2534	MSKCC	GRCh37	6	112024168	112024168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	110	370	0	ENST00000368678.4:c.617G>A	p.Arg206His	p.R206H	ENST00000368678		206	cGc/cAc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117746738	117746738	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	116	364	0	ENST00000368508.3:c.82A>G	p.Thr28Ala	p.T28A	ENST00000368508	NM_002944.2	28	Aca/Gca																																																																															
PMS2	5395	MSKCC	GRCh37	7	6042169	6042170	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGG			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	62	423	0	ENST00000265849.7:c.448_451dup	p.Arg151ProfsTer22	p.R151Pfs*22	ENST00000265849	NM_000535.5	151	cgc/cCCCCgc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508589	106508589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	24	311	0	ENST00000359195.3:c.583C>T	p.Leu195Phe	p.L195F	ENST00000359195	NM_002649.2	195	Ctc/Ttc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508601	106508601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	90	321	0	ENST00000359195.3:c.595C>T	p.His199Tyr	p.H199Y	ENST00000359195	NM_002649.2	199	Cac/Tac																																																																															
BRAF	673	MSKCC	GRCh37	7	140500228	140500228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	177	422	1	ENST00000288602.6:c.914C>T	p.Ala305Val	p.A305V	ENST00000288602	NM_004333.4	305	gCg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949128	151949128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	149	435	0	ENST00000262189.6:c.1517C>T	p.Thr506Ile	p.T506I	ENST00000262189	NM_170606.2	506	aCt/aTt																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346449	152346449	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	73	284	0	ENST00000359321.1:c.122-1G>A		p.X41_splice	ENST00000359321	NM_005431.1	41																																																																																
PREX2	80243	MSKCC	GRCh37	8	68972929	68972929	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	97	358	0	ENST00000288368.4:c.1254G>A	p.Trp418Ter	p.W418*	ENST00000288368	NM_024870.2	418	tgG/tgA																																																																															
NBN	4683	MSKCC	GRCh37	8	90982685	90982685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	114	316	0	ENST00000265433.3:c.803C>T	p.Thr268Met	p.T268M	ENST00000265433	NM_002485.4	268	aCg/aTg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141566042	141566042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	148	408	0	ENST00000220592.5:c.1222G>A	p.Val408Met	p.V408M	ENST00000220592	NM_012154.3	408	Gtg/Atg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5123045	5123045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	39	341	0	ENST00000381652.3:c.3101C>T	p.Ala1034Val	p.A1034V	ENST00000381652	NM_004972.3	1034	gCc/gTc																																																																															
TEK	7010	MSKCC	GRCh37	9	27213494	27213494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	96	431	0	ENST00000380036.4:c.2890G>A	p.Asp964Asn	p.D964N	ENST00000380036	NM_000459.3	964	Gat/Aat																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87482202	87482202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	131	488	1	ENST00000277120.3:c.1489C>T	p.Leu497Phe	p.L497F	ENST00000277120		497	Ctc/Ttc																																																																															
SYK	6850	MSKCC	GRCh37	9	93624520	93624520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	113	372	1	ENST00000375746.1:c.611C>T	p.Ala204Val	p.A204V	ENST00000375746	NM_001174167.1	204	gCc/gTc																																																																															
SYK	6850	MSKCC	GRCh37	9	93650842	93650842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	138	376	2	ENST00000375746.1:c.1768C>T	p.Arg590Trp	p.R590W	ENST00000375746	NM_001174167.1	590	Cgg/Tgg																																																																															
FANCC	2176	MSKCC	GRCh37	9	97933362	97933362	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	44	300	0	ENST00000289081.3:c.520C>T	p.Arg174Ter	p.R174*	ENST00000289081	NM_000136.2	174	Cga/Tga																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891187	101891187	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	66	328	0	ENST00000374994.4:c.148A>G	p.Thr50Ala	p.T50A	ENST00000374994	NM_004612.2	50	Aca/Gca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412658	139412658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	185	548	0	ENST00000277541.6:c.1186G>A	p.Ala396Thr	p.A396T	ENST00000277541	NM_017617.3	396	Gcc/Acc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417392	139417392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	45	613	0	ENST00000277541.6:c.652C>T	p.Pro218Ser	p.P218S	ENST00000277541	NM_017617.3	218	Ccc/Tcc																																																																															
AR	367	MSKCC	GRCh37	X	66765298	66765298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	121	273	0	ENST00000374690.3:c.310C>T	p.Pro104Ser	p.P104S	ENST00000374690	NM_000044.3	104	Ccc/Tcc																																																																															
MED12	9968	MSKCC	GRCh37	X	70357450	70357450	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	23	288	0	ENST00000374080.3:c.5791A>G	p.Thr1931Ala	p.T1931A	ENST00000374080		1931	Act/Gct																																																																															
LMO1	4004	MSKCC	GRCh37	11	8251922	8251922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	158	488	2	ENST00000335790.3:c.155C>T	p.Ala52Val	p.A52V	ENST00000335790	NM_002315.2	52	gCc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	20	598	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0031216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	80	538	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143985	11143985	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	57	622	1	ENST00000344626.4:c.3566G>T	p.Arg1189Leu	p.R1189L	ENST00000344626	NM_003072.3	1189	cGa/cTa																																																																															
MST1	4485	MSKCC	GRCh37	3	49721541	49721541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	60	548	0	ENST00000449682.2:c.2098G>A	p.Ala700Thr	p.A700T	ENST00000449682	NM_020998.3	700	Gca/Aca																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30102152	30102152	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0031216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	36	541	1	ENST00000331968.5:c.1315C>T	p.Arg439Trp	p.R439W	ENST00000331968	NM_002742.2	439	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578469	+	inframe_deletion	In_Frame_Del	DEL	CGCGGGTGC	CGCGGGTGC	-			P-0031218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	385	809	0	ENST00000269305.4:c.461_469del	p.Gly154_Arg156del	p.G154_R156del	ENST00000269305	NM_001126112.2	154	gGCACCCGCGtc/gtc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0031771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	57	530	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	72	581	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69002939	69002939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	26	255	0	ENST00000288368.4:c.2239C>T	p.Arg747Trp	p.R747W	ENST00000288368	NM_024870.2	747	Cgg/Tgg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205731	128205732	+	stop_gained	Nonsense_Mutation	DNP	GA	GA	TT			P-0031771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	78	737	2	ENST00000341105.2:c.143_144delinsAA	p.Phe48Ter	p.F48*	ENST00000341105	NM_032638.4	48	tTC/tAA																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044850	47044850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	201	755	5	ENST00000329236.7:c.1942C>T	p.Arg648Ter	p.R648*	ENST00000329236	NM_001204466.1	648	Cga/Tga																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162829	38162829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	1254	458	0	ENST00000317025.8:c.2377C>T	p.Arg793Cys	p.R793C	ENST00000317025	NM_023034.1	793	Cgc/Tgc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176105641	176105641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	109	443	0	ENST00000367669.3:c.874G>T	p.Asp292Tyr	p.D292Y	ENST00000367669	NM_022457.5	292	Gat/Tat																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473650	67473654	+	frameshift_variant	Frame_Shift_Del	DEL	GTCGG	GTCGG	-			P-0032251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	287	519	0	ENST00000327367.4:c.731_735del	p.Val244GlyfsTer65	p.V244Gfs*65	ENST00000327367	NM_005902.3	244	GTCGGg/g																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106228	27106228	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	63	543	0	ENST00000324856.7:c.5839C>T	p.Gln1947Ter	p.Q1947*	ENST00000324856	NM_006015.4	1947	Cag/Tag																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514308	69514308	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142959398		P-0032279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	138	534	0	ENST00000294312.3:c.373G>A	p.Glu125Lys	p.E125K	ENST00000294312	NM_005117.2	125	Gag/Aag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344314	118344314	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	31	340	0	ENST00000534358.1:c.2440C>T	p.Gln814Ter	p.Q814*	ENST00000534358	NM_005933.3	814	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	203	885	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692895	89692896	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0032598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	30	556	0	ENST00000371953.3:c.379_380delinsTT	p.Gly127Leu	p.G127L	ENST00000371953	NM_000314.4	127	GGa/TTa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12043169	12043169	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	56	301	0	ENST00000353533.5:c.1054G>T	p.Glu352Ter	p.E352*	ENST00000353533	NM_003010.3	352	Gaa/Taa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138197249	138197249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	52	440	0	ENST00000237289.4:c.751G>A	p.Gly251Ser	p.G251S	ENST00000237289	NM_001270507.1	251	Ggc/Agc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0032703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	90	731	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575671	48575671	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	58	622	0	ENST00000342988.3:c.431C>G	p.Ser144Ter	p.S144*	ENST00000342988	NM_005359.5	144	tCa/tGa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255887	16255887	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	30	443	0	ENST00000375759.3:c.3152A>C	p.Lys1051Thr	p.K1051T	ENST00000375759	NM_015001.2	1051	aAa/aCa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164659	47164690	+	frameshift_variant	Frame_Shift_Del	DEL	AGAATAGGATGATGTCCTTAGGTCTCTGTAAG	AGAATAGGATGATGTCCTTAGGTCTCTGTAAG	-			P-0032703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	37	470	0	ENST00000409792.3:c.1436_1467del	p.Ser479Ter	p.S479*	ENST00000409792	NM_014159.6	479	tCTTACAGAGACCTAAGGACATCATCCTATTCT/t																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52613194	52613194	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	46	651	0	ENST00000394830.3:c.3334G>T	p.Glu1112Ter	p.E1112*	ENST00000394830	NM_018313.4	1112	Gaa/Taa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157510779	157510800	+	frameshift_variant	Frame_Shift_Del	DEL	ACTCGGGATCCTTGCAAGGCCC	ACTCGGGATCCTTGCAAGGCCC	-			P-0032703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	24	460	0	ENST00000346085.5:c.3556_3577del	p.Ser1186ArgfsTer18	p.S1186Rfs*18	ENST00000346085	NM_020732.3	1185	aACTCGGGATCCTTGCAAGGCCCa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0033203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	168	638	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	48	308	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519947		P-0033203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	76	514	1	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																															
AXL	558	MSKCC	GRCh37	19	41743864	41743864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	77	668	0	ENST00000301178.4:c.799G>A	p.Asp267Asn	p.D267N	ENST00000301178	NM_021913.4	267	Gat/Aat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518366	8518366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	28	318	0	ENST00000356435.5:c.1025C>T	p.Thr342Met	p.T342M	ENST00000356435		342	aCg/aTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557750	187557750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	66	340	0	ENST00000441802.2:c.3961G>A	p.Asp1321Asn	p.D1321N	ENST00000441802	NM_005245.3	1321	Gat/Aat																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206666366	206666366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	74	552	0	ENST00000367120.3:c.1846G>A	p.Glu616Lys	p.E616K	ENST00000367120	NM_014002.3	616	Gag/Aag																																																																															
SOS1	6654	MSKCC	GRCh37	2	39251196	39251196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	38	695	0	ENST00000402219.2:c.1157G>T	p.Gly386Val	p.G386V	ENST00000402219	NM_005633.3	386	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0033545-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			367	195	385	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
REL	5966	MSKCC	GRCh37	2	61118871	61118871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033545-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			323	91	292	0	ENST00000295025.8:c.64C>T	p.Arg22Cys	p.R22C	ENST00000295025	NM_002908.2	22	Cgt/Tgt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981167	201981167	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033545-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			638	151	995	0	ENST00000359651.3:c.246del	p.Asn83ThrfsTer72	p.N83Tfs*72	ENST00000359651		82	aaG/aa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828074	243828074	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0033545-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			304	75	289	1	ENST00000263826.5:c.284G>T	p.Arg95Met	p.R95M	ENST00000263826	NM_005465.4	95	aGg/aTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604790	+	frameshift_variant	Frame_Shift_Del	DEL	ACG	ACG	T			P-0033545-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			213	89	453	0	ENST00000342988.3:c.1610_1612delinsT	p.Asp537ValfsTer39	p.D537Vfs*39	ENST00000342988	NM_005359.5	537	gACGaa/gTaa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	98	617	3	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489543	40489543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	108	630	7	ENST00000264657.5:c.707C>T	p.Thr236Met	p.T236M	ENST00000264657	NM_139276.2	236	aCg/aTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633113	3633113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	122	665	2	ENST00000294008.3:c.5138C>T	p.Ser1713Phe	p.S1713F	ENST00000294008	NM_032444.2	1713	tCc/tTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828208	72828209	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0034333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	108	719	0	ENST00000268489.5:c.8371_8372dup	p.Met2792ProfsTer10	p.M2792Pfs*10	ENST00000268489	NM_006885.3	2791	acc/acACc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472594	88472594	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	159	389	0	ENST00000360948.2:c.1961C>A	p.Ser654Tyr	p.S654Y	ENST00000360948	NM_001012338.2	654	tCc/tAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0034409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	374	524	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0034409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	234	372	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	362	462	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	368	437	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	571	699	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67670713	67670713	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	295	458	0	ENST00000264010.4:c.1958G>T	p.Gly653Val	p.G653V	ENST00000264010	NM_006565.3	653	gGa/gTa																																																																															
WT1	7490	MSKCC	GRCh37	11	32456396	32456396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	261	611	1	ENST00000332351.3:c.496G>A	p.Gly166Ser	p.G166S	ENST00000332351	NM_024426.4	166	Ggc/Agc																																																																															
MED12	9968	MSKCC	GRCh37	X	70352388	70352388	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	199	338	0	ENST00000374080.3:c.4415G>A	p.Ser1472Asn	p.S1472N	ENST00000374080		1472	aGc/aAc																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366683	40366683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	158	314	0	ENST00000397332.2:c.514C>A	p.Pro172Thr	p.P172T	ENST00000397332	NM_001033082.2	172	Ccc/Acc																																																																															
JUN	3725	MSKCC	GRCh37	1	59248692	59248708	+	frameshift_variant	Frame_Shift_Del	DEL	CGAGGCGTTGAGGGCAT	CGAGGCGTTGAGGGCAT	-			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	89	821	0	ENST00000371222.2:c.35_51del	p.Asp12ValfsTer13	p.D12Vfs*13	ENST00000371222	NM_002228.3	12	gATGCCCTCAACGCCTCG/g																																																																															
HIST2H3D	653604	MSKCC	GRCh37	1	149784839	149784839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	89	208	0	ENST00000331491.1:c.398G>T	p.Gly133Val	p.G133V	ENST00000331491	NM_001123375.2	133	gGg/gTg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243727100	243727100	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	364	502	0	ENST00000263826.5:c.870T>A	p.Phe290Leu	p.F290L	ENST00000263826	NM_005465.4	290	ttT/ttA																																																																															
PAK1	5058	MSKCC	GRCh37	11	77047238	77047238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	417	549	0	ENST00000356341.3:c.1306G>T	p.Val436Leu	p.V436L	ENST00000356341	NM_002576.4	436	Gtg/Ttg																																																																															
SESN3	143686	MSKCC	GRCh37	11	94917692	94917692	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	208	512	0	ENST00000536441.1:c.829G>T	p.Glu277Ter	p.E277*	ENST00000536441	NM_144665.3	277	Gaa/Taa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343376	118343376	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	198	314	0	ENST00000534358.1:c.1502A>T	p.Glu501Val	p.E501V	ENST00000534358	NM_005933.3	501	gAg/gTg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645388	67645388	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	149	283	0	ENST00000264010.4:c.653G>C	p.Gly218Ala	p.G218A	ENST00000264010	NM_006565.3	218	gGc/gCc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351528	89351528	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	493	730	0	ENST00000301030.4:c.1422C>G	p.Asp474Glu	p.D474E	ENST00000301030	NM_001256183.1	474	gaC/gaG																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600006	10600006	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	565	679	0	ENST00000171111.5:c.1570G>T	p.Gly524Cys	p.G524C	ENST00000171111	NM_203500.1	524	Ggc/Tgc																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919628	96919628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	205	531	0	ENST00000258439.3:c.635C>T	p.Ser212Leu	p.S212L	ENST00000258439	NM_001193304.2	212	tCa/tTa																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736160	204736160	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	340	436	1	ENST00000302823.3:c.517G>C	p.Gly173Arg	p.G173R	ENST00000302823	NM_005214.4	173	Ggg/Cgg																																																																															
BARD1	580	MSKCC	GRCh37	2	215645508	215645508	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	59	610	1	ENST00000260947.4:c.1090T>C	p.Ser364Pro	p.S364P	ENST00000260947	NM_000465.2	364	Tca/Cca																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46267767	46267767	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	244	512	0	ENST00000371998.3:c.2528A>G	p.Gln843Arg	p.Q843R	ENST00000371998		843	cAg/cGg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643711	52643712	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	502	591	0	ENST00000394830.3:c.2184dup	p.Val729CysfsTer5	p.V729Cfs*5	ENST00000394830	NM_018313.4	728	-/T																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31451736	31451736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	241	248	0	ENST00000344624.3:c.2586G>A	p.Met862Ile	p.M862I	ENST00000344624		862	atG/atA																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38949832	38949832	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	218	315	0	ENST00000357387.3:c.4118C>G	p.Ser1373Cys	p.S1373C	ENST00000357387	NM_152756.3	1373	tCc/tGc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527614	157527614	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	81	443	0	ENST00000346085.5:c.5339A>T	p.Gln1780Leu	p.Q1780L	ENST00000346085	NM_020732.3	1780	cAa/cTa																																																																															
HGF	3082	MSKCC	GRCh37	7	81332040	81332040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	169	237	1	ENST00000222390.5:c.2044C>T	p.His682Tyr	p.H682Y	ENST00000222390	NM_000601.4	682	Cat/Tat																																																																															
PREX2	80243	MSKCC	GRCh37	8	69129907	69129907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	166	282	0	ENST00000288368.4:c.4661del	p.Leu1554ArgfsTer12	p.L1554Rfs*12	ENST00000288368	NM_024870.2	1554	cTg/cg																																																																															
NBN	4683	MSKCC	GRCh37	8	90967554	90967554	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	104	351	0	ENST00000265433.3:c.1354A>G	p.Thr452Ala	p.T452A	ENST00000265433	NM_002485.4	452	Acc/Gcc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410118	63410118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	534	655	0	ENST00000330258.3:c.3049G>T	p.Gly1017Trp	p.G1017W	ENST00000330258	NM_152424.3	1017	Ggg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0035559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	103	580	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0035843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	144	351	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325932	65325932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	153	394	0	ENST00000342505.4:c.1190C>T	p.Ser397Phe	p.S397F	ENST00000342505	NM_002227.2	397	tCt/tTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151843688	151843688	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	141	345	1	ENST00000262189.6:c.14027A>T	p.Glu4676Val	p.E4676V	ENST00000262189	NM_170606.2	4676	gAa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0036256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	170	753	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
RB1	5925	MSKCC	GRCh37	13	49047527	49047527	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0036256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	20	246	0	ENST00000267163.4:c.2520+1G>C		p.X840_splice	ENST00000267163	NM_000321.2	840																																																																																
WT1	7490	MSKCC	GRCh37	11	32417902	32417902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	41	686	0	ENST00000332351.3:c.1150G>A	p.Glu384Lys	p.E384K	ENST00000332351	NM_024426.4	384	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425037	49425037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	79	928	1	ENST00000301067.7:c.13451G>A	p.Arg4484Gln	p.R4484Q	ENST00000301067	NM_003482.3	4484	cGa/cAa																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216704	7216707	+	frameshift_variant	Frame_Shift_Del	DEL	TGAG	TGAG	-			P-0036256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	81	557	0	ENST00000380728.2:c.716_719del	p.Thr239ArgfsTer105	p.T239Rfs*105	ENST00000380728		239	aCTCAg/ag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55086974	55086974	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	41	312	1	ENST00000275493.2:c.4C>T	p.Arg2Ter	p.R2*	ENST00000275493	NM_005228.3	2	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343093	118343093	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	232	449	0	ENST00000534358.1:c.1219C>T	p.Arg407Ter	p.R407*	ENST00000534358	NM_005933.3	407	Cga/Tga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061221	38061241	+	inframe_deletion	In_Frame_Del	DEL	GTTCTCGAACATGTTGCCGGA	GTTCTCGAACATGTTGCCGGA	-			P-0036781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	267	584	0	ENST00000250448.2:c.748_768del	p.Ser250_Asn256del	p.S250_N256del	ENST00000250448	NM_004496.3	250	TCCGGCAACATGTTCGAGAAC/-																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874986	151874993	+	frameshift_variant	Frame_Shift_Del	DEL	CTGATCTT	CTGATCTT	TGC			P-0036781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	68	318	1	ENST00000262189.6:c.7545_7552delinsGCA	p.Arg2516HisfsTer7	p.R2516Hfs*7	ENST00000262189	NM_170606.2	2515	agAAGATCAGta/agGCAta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	552	725	0	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52623120	52623134	+	inframe_deletion	In_Frame_Del	DEL	GATATGTGGTTGTAG	GATATGTGGTTGTAG	-			P-0036830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	168	594	0	ENST00000394830.3:c.2917_2931del	p.Leu973_Ile977del	p.L973_I977del	ENST00000394830	NM_018313.4	973	CTACAACCACATATC/-																																																																															
APC	324	MSKCC	GRCh37	5	112174270	112174271	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0036830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	134	355	20	ENST00000257430.4:c.2982_2983dup	p.Cys995PhefsTer11	p.C995Ffs*11	ENST00000257430	NM_000038.5	993	-/TT																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0036830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	134	385	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
SESN1	27244	MSKCC	GRCh37	6	109319780	109319780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	98	632	0	ENST00000436639.2:c.908G>A	p.Cys303Tyr	p.C303Y	ENST00000436639	NM_014454.2	303	tGt/tAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0037046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	217	773	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0037046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	76	344	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40678601	40678601	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	241	705	0	ENST00000249776.8:c.343G>C	p.Val115Leu	p.V115L	ENST00000249776	NM_033286.3	115	Gtt/Ctt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448089	49448089	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0037069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	169	446	0	ENST00000301067.7:c.510+1G>T		p.X170_splice	ENST00000301067	NM_003482.3	170																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38061130	38061192	+	inframe_deletion	In_Frame_Del	DEL	CGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGA	CGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGA	-			P-0037069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	146	76	0	ENST00000250448.2:c.797_859del	p.Phe266_Ala287delinsSer	p.F266_A287delinsS	ENST00000250448	NM_004496.3	266	tTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGcc/tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	56	755	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518099	8518099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	29	574	1	ENST00000356435.5:c.1292C>T	p.Ser431Leu	p.S431L	ENST00000356435		431	tCg/tTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	24	716	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643768	52643768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	62	815	1	ENST00000394830.3:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000394830	NM_018313.4	710	Cga/Tga																																																																															
STAG2	10735	MSKCC	GRCh37	X	123200218	123200218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	21	310	0	ENST00000218089.9:c.2197G>A	p.Ala733Thr	p.A733T	ENST00000218089	NM_001042749.1	733	Gca/Aca																																																																															
XIAP	331	MSKCC	GRCh37	X	123020225	123020225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	37	354	0	ENST00000355640.3:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000355640		238	cGa/cAa																																																																															
MGA	23269	MSKCC	GRCh37	15	42040967	42040967	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	54	770	0	ENST00000219905.7:c.5345T>G	p.Leu1782Arg	p.L1782R	ENST00000219905	NM_001164273.1	1782	cTt/cGt																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729208	66729208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	42	746	0	ENST00000307102.5:c.416T>C	p.Ile139Thr	p.I139T	ENST00000307102	NM_002755.3	139	aTc/aCc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117868	70117868	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	24	382	0	ENST00000245479.2:c.336C>A	p.Phe112Leu	p.F112L	ENST00000245479	NM_000346.3	112	ttC/ttA																																																																															
MSH2	4436	MSKCC	GRCh37	2	47635599	47635599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	52	595	0	ENST00000233146.2:c.271G>T	p.Asp91Tyr	p.D91Y	ENST00000233146	NM_000251.2	91	Gat/Tat																																																																															
MST1	4485	MSKCC	GRCh37	3	49723613	49723613	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	10	140	0	ENST00000449682.2:c.1029G>T	p.Glu343Asp	p.E343D	ENST00000449682	NM_020998.3	343	gaG/gaT																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114763	73114763	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	11	149	0	ENST00000356692.5:c.1144G>T	p.Glu382Ter	p.E382*	ENST00000356692		382	Gaa/Taa																																																																															
E2F3	1871	MSKCC	GRCh37	6	20490528	20490528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	73	645	0	ENST00000346618.3:c.1265T>G	p.Phe422Cys	p.F422C	ENST00000346618	NM_001949.4	422	tTt/tGt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038531	47038531	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	28	354	0	ENST00000329236.7:c.462G>T	p.Glu154Asp	p.E154D	ENST00000329236	NM_001204466.1	154	gaG/gaT																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53247007	53247007	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	39	283	0	ENST00000375401.3:c.493G>T	p.Glu165Ter	p.E165*	ENST00000375401	NM_004187.3	165	Gaa/Taa																																																																															
ATRX	546	MSKCC	GRCh37	X	76938710	76938710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	27	411	0	ENST00000373344.5:c.2038G>A	p.Glu680Lys	p.E680K	ENST00000373344	NM_000489.3	680	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	143	532	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979529	7979529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	176	694	0	ENST00000319144.4:c.1496G>A	p.Arg499His	p.R499H	ENST00000319144	NM_001139.2	499	cGc/cAc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375016	45375016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	128	418	0	ENST00000262160.6:c.827C>T	p.Ser276Leu	p.S276L	ENST00000262160	NM_005901.5	276	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0037075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	120	399	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175225	112175225	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	73	299	0	ENST00000257430.4:c.3934G>T	p.Gly1312Ter	p.G1312*	ENST00000257430	NM_000038.5	1312	Gga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	89	343	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	160	523	0	ENST00000269305.4:c.742C>G	p.Arg248Gly	p.R248G	ENST00000269305	NM_001126112.2	248	Cgg/Ggg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0037243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	241	595	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0037243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	123	358	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
CIC	23152	MSKCC	GRCh37	19	42798379	42798379	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	97	575	1	ENST00000575354.2:c.4250G>T	p.Arg1417Leu	p.R1417L	ENST00000575354	NM_015125.3	1417	cGc/cTc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658481	3658481	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140876043		P-0037243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	96	658	1	ENST00000294008.3:c.485C>T	p.Thr162Met	p.T162M	ENST00000294008	NM_032444.2	162	aCg/aTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710654	114710655	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0037243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	58	360	0	ENST00000543371.1:c.142_143del	p.Leu48SerfsTer3	p.L48Sfs*3	ENST00000543371	NM_001198531.1	47	TCt/t																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1940187	1940187	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1274132193		P-0037243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	18	138	0	ENST00000382895.3:c.1684A>G	p.Ile562Val	p.I562V	ENST00000382895	NM_133330.2	562	Atc/Gtc																																																																															
APC	324	MSKCC	GRCh37	5	112175751	112175752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0037243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	57	339	0	ENST00000257430.4:c.4462_4463dup	p.Leu1488PhefsTer20	p.L1488Ffs*20	ENST00000257430	NM_000038.5	1487	act/acTTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	101	530	0	ENST00000269305.4:c.711G>C	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atC																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437597	52437610	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGGAGGGCCGC	GGCTGGAGGGCCGC	-			P-0037273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	95	592	0	ENST00000460680.1:c.1551_1564del	p.Arg518CysfsTer14	p.R518Cfs*14	ENST00000460680	NM_004656.3	517	acGCGGCCCTCCAGCCct/acct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0037291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	48	557	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579359	7579359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	9	649	1	ENST00000269305.4:c.328C>T	p.Arg110Cys	p.R110C	ENST00000269305	NM_001126112.2	110	Cgt/Tgt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879657	37879657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	9	674	1	ENST00000269571.5:c.2032C>T	p.Arg678Trp	p.R678W	ENST00000269571		678	Cgg/Tgg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139815655	139815655	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	46	559	0	ENST00000247668.2:c.1126A>G	p.Ile376Val	p.I376V	ENST00000247668	NM_021138.3	376	Atc/Gtc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170837	11170837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	172	646	0	ENST00000344626.4:c.4885G>A	p.Asp1629Asn	p.D1629N	ENST00000344626	NM_003072.3	1629	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0037369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	118	543	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249020	55249020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	272	394	0	ENST00000275493.2:c.2318A>G	p.His773Arg	p.H773R	ENST00000275493	NM_005228.3	773	cAc/cGc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857875	9857875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	122	549	0	ENST00000330684.3:c.3526G>A	p.Glu1176Lys	p.E1176K	ENST00000330684	NM_001134407.1	1176	Gag/Aag																																																																															
RAD50	10111	MSKCC	GRCh37	5	131927659	131927666	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGAAGA	CTTGAAGA	-			P-0037369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	19	240	0	ENST00000265335.6:c.1728_1735del	p.Glu577AlafsTer3	p.E577Afs*3	ENST00000265335		576	CTTGAAGAc/c																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	27	601	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217820	7217821	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	35	770	0	ENST00000380728.2:c.190dup	p.Glu64GlyfsTer33	p.E64Gfs*33	ENST00000380728		64	gag/gGag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	32	391	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0037374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	41	534	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448310	56448310	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	47	481	1	ENST00000407977.2:c.337C>T	p.Arg113Ter	p.R113*	ENST00000407977		113	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420606	49420606	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	41	568	1	ENST00000301067.7:c.15143G>T	p.Arg5048Leu	p.R5048L	ENST00000301067	NM_003482.3	5048	cGt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	9	437	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0037482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	132	439	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112173299	112173299	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	23	272	0	ENST00000257430.4:c.2008A>T	p.Lys670Ter	p.K670*	ENST00000257430	NM_000038.5	670	Aaa/Taa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11217330	11217330	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	183	607	0	ENST00000361445.4:c.4348T>G	p.Tyr1450Asp	p.Y1450D	ENST00000361445	NM_004958.3	1450	Tat/Gat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0037484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	289	446	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0037484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	378	515	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68844181	68844181	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	342	512	0	ENST00000261769.5:c.769G>T	p.Asp257Tyr	p.D257Y	ENST00000261769	NM_004360.3	257	Gac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0037484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	172	280	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
BRCA1	672	MSKCC	GRCh37	17	41223028	41223028	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	426	633	1	ENST00000357654.3:c.4903G>T	p.Glu1635Ter	p.E1635*	ENST00000357654	NM_007294.3	1635	Gag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42000387	42000388	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	229	329	0	ENST00000219905.7:c.2406_2407insC	p.Ser803LeufsTer4	p.S803Lfs*4	ENST00000219905	NM_001164273.1	802	-/C																																																																															
NF1	4763	MSKCC	GRCh37	17	29652877	29652898	+	frameshift_variant	Frame_Shift_Del	DEL	CCATGTCTTACTGACTTTAAAG	CCATGTCTTACTGACTTTAAAG	-			P-0037484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	200	261	1	ENST00000358273.4:c.4879_4900del	p.Val1627IlefsTer9	p.V1627Ifs*9	ENST00000358273	NM_001042492.2	1625	taCCATGTCTTACTGACTTTAAAG/ta																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1961340	1961340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	408	486	1	ENST00000382891.5:c.3128C>T	p.Pro1043Leu	p.P1043L	ENST00000382891	NM_133335.3	1043	cCg/cTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721264	176721264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	215	321	0	ENST00000439151.2:c.6895C>T	p.Leu2299Phe	p.L2299F	ENST00000439151	NM_022455.4	2299	Ctc/Ttc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106524696	106524696	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	89	320	0	ENST00000359195.3:c.2857A>G	p.Met953Val	p.M953V	ENST00000359195	NM_002649.2	953	Atg/Gtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	163	488	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0037505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	198	622	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0037505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	124	380	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112170865	112170865	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0037505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	114	360	0	ENST00000257430.4:c.1958+3A>G		p.X653_splice	ENST00000257430	NM_000038.5	653																																																																																
SOX9	6662	MSKCC	GRCh37	17	70117873	70117873	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	192	390	0	ENST00000245479.2:c.341T>C	p.Val114Ala	p.V114A	ENST00000245479	NM_000346.3	114	gTg/gCg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581158	48581158	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	87	265	0	ENST00000342988.3:c.463del	p.Ser155ValfsTer2	p.S155Vfs*2	ENST00000342988	NM_005359.5	154	tcA/tc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39250056	39250056	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	59	575	0	ENST00000402219.2:c.1513G>C	p.Asp505His	p.D505H	ENST00000402219	NM_005633.3	505	Gat/Cat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	287	656	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
AXL	558	MSKCC	GRCh37	19	41743966	41743966	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	170	827	0	ENST00000301178.4:c.901C>G	p.Pro301Ala	p.P301A	ENST00000301178	NM_021913.4	301	Cct/Gct																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515166	149515166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	104	732	0	ENST00000261799.4:c.316C>T	p.Arg106Cys	p.R106C	ENST00000261799	NM_002609.3	106	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0037620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	132	266	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349640	89349641	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	270	663	14	ENST00000301030.4:c.3309dupA	p.Asp1104ArgfsTer2	p.D1104Rfs*2	ENST00000301030	NM_001256183.1	1103	-/A																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2097822	2097822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	225	380	1	ENST00000219066.1:c.27G>A	p.Met9Ile	p.M9I	ENST00000219066	NM_002528.5	9	atG/atA																																																																															
KDM5A	5927	MSKCC	GRCh37	12	432848	432848	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	38	350	0	ENST00000399788.2:c.2068T>G	p.Cys690Gly	p.C690G	ENST00000399788	NM_001042603.1	690	Tgt/Ggt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112578	115112579	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	406	570	0	ENST00000257566.3:c.1161dup	p.Glu388ArgfsTer19	p.E388Rfs*19	ENST00000257566	NM_016569.3	387	-/C																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0037675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	281	321	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68853269	68853269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	323	372	0	ENST00000261769.5:c.1652del	p.Glu551GlyfsTer6	p.E551Gfs*6	ENST00000261769	NM_004360.3	551	gAg/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0037756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	92	964	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271819	15271820	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0037756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	47	879	0	ENST00000263388.2:c.6619_6620del	p.Arg2207AlafsTer34	p.R2207Afs*34	ENST00000263388	NM_000435.2	2207	CGg/g																																																																															
AXL	558	MSKCC	GRCh37	19	41759571	41759571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	10	771	1	ENST00000301178.4:c.1994C>A	p.Thr665Asn	p.T665N	ENST00000301178	NM_021913.4	665	aCc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0037759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	295	701	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524595	103524595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	127	349	0	ENST00000355739.4:c.2726C>T	p.Pro909Leu	p.P909L	ENST00000355739	NM_000123.3	909	cCt/cTt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56491669	56491669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	216	566	0	ENST00000267101.3:c.2561G>T	p.Gly854Val	p.G854V	ENST00000267101	NM_001982.3	854	gGt/gTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993848	72993848	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	226	610	0	ENST00000268489.5:c.197C>G	p.Ala66Gly	p.A66G	ENST00000268489	NM_006885.3	66	gCg/gGg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868412	45868412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	299	858	1	ENST00000391945.4:c.365C>T	p.Thr122Ile	p.T122I	ENST00000391945	NM_000400.3	122	aCa/aTa																																																																															
KIT	3815	MSKCC	GRCh37	4	55564603	55564603	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	156	678	0	ENST00000288135.5:c.491C>G	p.Pro164Arg	p.P164R	ENST00000288135	NM_000222.2	164	cCt/cGt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176665309	176665309	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	214	537	0	ENST00000439151.2:c.3993C>G	p.Asp1331Glu	p.D1331E	ENST00000439151	NM_022455.4	1331	gaC/gaG																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099218	157099218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	167	553	3	ENST00000346085.5:c.155C>T	p.Ser52Leu	p.S52L	ENST00000346085	NM_020732.3	52	tCg/tTg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976136	18976172	+	protein_altering_variant	In_Frame_Del	DEL	ATTGGCATGATCAGTGCCGGCCCTAGCCACGTGGCTG	ATTGGCATGATCAGTGCCGGCCCTAGCCACGTGGCTG	C			P-0037759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1203	300	934	0	ENST00000262803.5:c.2896_2932delinsC	p.Ile966_Ala978delinsPro	p.I966_A978delinsP	ENST00000262803	NM_002911.3	966	ATTGGCATGATCAGTGCCGGCCCTAGCCACGTGGCTGcc/Ccc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0037835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	144	327	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911012	32911012	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	66	496	0	ENST00000380152.3:c.2520G>C	p.Met840Ile	p.M840I	ENST00000380152		840	atG/atC																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873738	35873738	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	103	589	0	ENST00000216797.5:c.113A>G	p.Lys38Arg	p.K38R	ENST00000216797	NM_020529.2	38	aAa/aGa																																																																															
CDH1	999	MSKCC	GRCh37	16	68857460	68857460	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	112	605	0	ENST00000261769.5:c.2095C>T	p.Gln699Ter	p.Q699*	ENST00000261769	NM_004360.3	699	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0037904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	322	543	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0037904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	344	264	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508082	106508082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	48	204	0	ENST00000359195.3:c.76C>T	p.Arg26Cys	p.R26C	ENST00000359195	NM_002649.2	26	Cgc/Tgc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861143	57861143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	331	393	1	ENST00000228682.2:c.940C>T	p.Arg314Cys	p.R314C	ENST00000228682	NM_005269.2	314	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175287	112175288	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	136	206	0	ENST00000257430.4:c.3999dup	p.Ser1334IlefsTer8	p.S1334Ifs*8	ENST00000257430	NM_000038.5	1332	-/A																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446069	49446069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	441	694	0	ENST00000301067.7:c.1397G>A	p.Arg466His	p.R466H	ENST00000301067	NM_003482.3	466	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992051	72992051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	105	444	0	ENST00000268489.5:c.1994G>T	p.Arg665Leu	p.R665L	ENST00000268489	NM_006885.3	665	cGt/cTt																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260142	149260142	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	86	345	0	ENST00000360632.3:c.751C>T	p.Gln251Ter	p.Q251*	ENST00000360632	NM_015472.4	251	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	201	373	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	213	648	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012389	29012389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	154	481	2	ENST00000282397.4:c.482C>T	p.Thr161Met	p.T161M	ENST00000282397	NM_002019.4	161	aCg/aTg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473732	67473732	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	420	695	0	ENST00000327367.4:c.812T>C	p.Leu271Pro	p.L271P	ENST00000327367	NM_005902.3	271	cTa/cCa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176104188	176104188	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	51	290	0	ENST00000367669.3:c.926A>T	p.Asp309Val	p.D309V	ENST00000367669	NM_022457.5	309	gAt/gTt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245379	46245425	+	frameshift_variant	Frame_Shift_Del	DEL	ATAGCCCAGCAACCATTTTCCAAGGGACTTCTGGCAACCAGGTAACC	ATAGCCCAGCAACCATTTTCCAAGGGACTTCTGGCAACCAGGTAACC	-			P-0037920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	96	427	0	ENST00000334344.6:c.3476_3522del	p.Ser1159AsnfsTer66	p.S1159Nfs*66	ENST00000334344	NM_152641.2	1158	aATAGCCCAGCAACCATTTTCCAAGGGACTTCTGGCAACCAGGTAACC/a																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245427	46245427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	99	424	0	ENST00000334344.6:c.3521T>C	p.Ile1174Thr	p.I1174T	ENST00000334344	NM_152641.2	1174	aTa/aCa																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872564	35872592	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTCTACGAATGCAAGAGAGACCAGAGAA	AGTCTACGAATGCAAGAGAGACCAGAGAA	-			P-0037920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	57	400	0	ENST00000216797.5:c.337-26_339del		p.X113_splice	ENST00000216797	NM_020529.2	113																																																																																
PREX2	80243	MSKCC	GRCh37	8	69021716	69021716	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	163	505	0	ENST00000288368.4:c.3004T>C	p.Ser1002Pro	p.S1002P	ENST00000288368	NM_024870.2	1002	Tct/Cct																																																																															
AGO2	27161	MSKCC	GRCh37	8	141542603	141542603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	447	671	6	ENST00000220592.5:c.2383C>T	p.Arg795Cys	p.R795C	ENST00000220592	NM_012154.3	795	Cgc/Tgc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139411796	139411796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	249	1019	3	ENST00000277541.6:c.1483G>A	p.Ala495Thr	p.A495T	ENST00000277541	NM_017617.3	495	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0037923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	76	371	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
AURKA	6790	MSKCC	GRCh37	20	54959348	54959348	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	48	309	0	ENST00000312783.6:c.352C>T	p.Gln118Ter	p.Q118*	ENST00000312783	NM_198436.1	118	Cag/Tag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69028094	69028094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	150	591	2	ENST00000288368.4:c.3253G>A	p.Val1085Ile	p.V1085I	ENST00000288368	NM_024870.2	1085	Gta/Ata																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971026	21971300	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCC	CCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCC	-			P-0037923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	54	552	0	ENST00000304494.5:c.151-93_332del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
PIK3CD	5293	MSKCC	GRCh37	1	9776630	9776630	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201035266		P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	193	660	1	ENST00000377346.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000377346	NM_005026.3	245	Ggc/Agc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259043	16259043	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	179	518	0	ENST00000375759.3:c.6313delG	p.Ala2105LeufsTer33	p.A2105Lfs*33	ENST00000375759	NM_015001.2	2103	aGg/ag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	129	514	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
MYCL	4610	MSKCC	GRCh37	1	40367084	40367084	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	171	547	0	ENST00000397332.2:c.113A>G	p.His38Arg	p.H38R	ENST00000397332	NM_001033082.2	38	cAc/cGc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430850	78430850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	167	523	0	ENST00000370768.2:c.539G>A	p.Gly180Asp	p.G180D	ENST00000370768	NM_003902.3	180	gGc/gAc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458252	120458252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	206	643	0	ENST00000256646.2:c.7093G>T	p.Val2365Leu	p.V2365L	ENST00000256646	NM_024408.3	2365	Gta/Tta																																																																															
FH	2271	MSKCC	GRCh37	1	241661268	241661268	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	123	393	0	ENST00000366560.3:c.1393T>C	p.Tyr465His	p.Y465H	ENST00000366560	NM_000143.3	465	Tat/Cat																																																																															
RET	5979	MSKCC	GRCh37	10	43606814	43606814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	223	619	0	ENST00000355710.3:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000355710	NM_020975.4	475	Cgg/Tgg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851272	63851272	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	216	597	0	ENST00000279873.7:c.2050C>A	p.Pro684Thr	p.P684T	ENST00000279873	NM_032199.2	684	Cca/Aca																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925318	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	89	425	0	ENST00000543371.1:c.1402_1403del	p.Lys468ValfsTer8	p.K468Vfs*8	ENST00000543371	NM_001198531.1	465	agAAaa/agaa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925622	114925622	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	194	560	2	ENST00000543371.1:c.1704del	p.Ser569ProfsTer33	p.S569Pfs*33	ENST00000543371	NM_001198531.1	567	gCc/gc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202122	67202122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	228	733	1	ENST00000312629.5:c.1225C>T	p.Arg409Cys	p.R409C	ENST00000312629	NM_003952.2	409	Cgc/Tgc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939413	71939413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148394356		P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	199	628	0	ENST00000298229.2:c.268C>T	p.Arg90Cys	p.R90C	ENST00000298229	NM_001567.3	90	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	171	494	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443752	49443752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	242	686	0	ENST00000301067.7:c.3619G>A	p.Glu1207Lys	p.E1207K	ENST00000301067	NM_003482.3	1207	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445500	49445500	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	246	710	1	ENST00000301067.7:c.1966delC	p.Leu656CysfsTer274	p.L656Cfs*274	ENST00000301067	NM_003482.3	656	Ctg/tg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436596	110436596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	222	624	0	ENST00000375856.3:c.1805G>T	p.Arg602Leu	p.R602L	ENST00000375856	NM_003749.2	602	cGg/cTg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712602	43712602	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	66	756	0	ENST00000382044.4:c.4582T>C	p.Tyr1528His	p.Y1528H	ENST00000382044	NM_001141980.1	1528	Tac/Cac																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	210	730	1	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																															
B2M	567	MSKCC	GRCh37	15	45007846	45007846	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	128	378	0	ENST00000558401.1:c.293A>G	p.Tyr98Cys	p.Y98C	ENST00000558401	NM_004048.2	98	tAt/tGt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472549	88472549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	111	517	0	ENST00000360948.2:c.2006A>G	p.Tyr669Cys	p.Y669C	ENST00000360948	NM_001012338.2	669	tAc/tGc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99456418	99456418	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138992740		P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	143	480	0	ENST00000268035.6:c.1735G>A	p.Val579Ile	p.V579I	ENST00000268035	NM_000875.3	579	Gtt/Att																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223521	2223521	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	138	651	0	ENST00000326181.6:c.1052T>C	p.Leu351Pro	p.L351P	ENST00000326181	NM_032271.2	351	cTc/cCc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789591	3789591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	162	407	0	ENST00000262367.5:c.4268delC	p.Pro1423LeufsTer36	p.P1423Lfs*36	ENST00000262367	NM_004380.2	1423	cCt/ct																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3790401	3790401	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	128	364	1	ENST00000262367.5:c.4132C>T	p.Arg1378Trp	p.R1378W	ENST00000262367	NM_004380.2	1378	Cgg/Tgg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	149	395	2	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14021987	14021987	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	109	508	0	ENST00000311895.7:c.687A>G	p.Ile229Met	p.I229M	ENST00000311895	NM_005236.2	229	atA/atG																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	150	480	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821506	72821506	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	165	462	0	ENST00000268489.5:c.10669A>G	p.Thr3557Ala	p.T3557A	ENST00000268489	NM_006885.3	3557	Aca/Gca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845640	72845640	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148354034		P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	167	539	1	ENST00000268489.5:c.3700G>A	p.Asp1234Asn	p.D1234N	ENST00000268489	NM_006885.3	1234	Gat/Aat																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346157	89346158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	102	331	0	ENST00000301030.4:c.6792dup	p.Ala2265ArgfsTer8	p.A2265Rfs*8	ENST00000301030	NM_001256183.1	2264	-/C																																																																															
CDK12	51755	MSKCC	GRCh37	17	37649018	37649018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	130	383	0	ENST00000447079.4:c.2123G>A	p.Arg708His	p.R708H	ENST00000447079	NM_015083.1	708	cGt/cAt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59878754	59878754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	91	407	0	ENST00000259008.2:c.1000G>A	p.Ala334Thr	p.A334T	ENST00000259008	NM_032043.2	334	Gcc/Acc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	225	597	4	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395664	45395664	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	136	406	1	ENST00000262160.6:c.470del	p.Lys157ArgfsTer6	p.K157Rfs*6	ENST00000262160	NM_005901.5	157	aAg/ag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216500	2216500	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	143	615	0	ENST00000398665.3:c.2144G>T	p.Gly715Val	p.G715V	ENST00000398665	NM_032482.2	715	gGc/gTc																																																																															
INSR	3643	MSKCC	GRCh37	19	7117084	7117084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	192	560	0	ENST00000302850.5:c.4132C>T	p.Arg1378Trp	p.R1378W	ENST00000302850	NM_000208.2	1378	Cgg/Tgg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250872	10250872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	170	576	1	ENST00000340748.4:c.3608C>T	p.Thr1203Ile	p.T1203I	ENST00000340748		1203	aCc/aTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285030	15285030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	174	597	0	ENST00000263388.2:c.4585G>A	p.Ala1529Thr	p.A1529T	ENST00000263388	NM_000435.2	1529	Gcc/Acc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289863	15289863	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201680145		P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	219	676	2	ENST00000263388.2:c.3691C>T	p.Arg1231Cys	p.R1231C	ENST00000263388	NM_000435.2	1231	Cgt/Tgt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349882	15349882	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	91	459	0	ENST00000263377.2:c.3770A>T	p.Gln1257Leu	p.Q1257L	ENST00000263377	NM_058243.2	1257	cAg/cTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15378346	15378346	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	74	239	0	ENST00000263377.2:c.440T>C	p.Val147Ala	p.V147A	ENST00000263377	NM_058243.2	147	gTc/gCc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967091	18967092	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs1384543747		P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	189	604	0	ENST00000262803.5:c.1814_1815del	p.Glu605AlafsTer17	p.E605Afs*17	ENST00000262803	NM_002911.3	602	gcAGag/gcag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210893	36210893	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	192	616	0	ENST00000222270.7:c.649del	p.Arg217GlyfsTer22	p.R217Gfs*22	ENST00000222270	NM_014727.1	215	aCc/ac																																																																															
CD79A	973	MSKCC	GRCh37	19	42384740	42384740	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	144	460	0	ENST00000221972.3:c.502C>T	p.Arg168Ter	p.R168*	ENST00000221972	NM_021601.3	168	Cga/Tga																																																																															
ERF	2077	MSKCC	GRCh37	19	42753068	42753068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	181	573	0	ENST00000222329.4:c.1196C>T	p.Ala399Val	p.A399V	ENST00000222329	NM_006494.2	399	gCt/gTt																																																																															
ERF	2077	MSKCC	GRCh37	19	42753266	42753266	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	124	684	0	ENST00000222329.4:c.998A>G	p.His333Arg	p.H333R	ENST00000222329	NM_006494.2	333	cAc/cGc																																																																															
CIC	23152	MSKCC	GRCh37	19	42791859	42791859	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	203	589	1	ENST00000575354.2:c.745T>C	p.Tyr249His	p.Y249H	ENST00000575354	NM_015125.3	249	Tac/Cac																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868311	45868311	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs151235136		P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	226	604	0	ENST00000391945.4:c.466C>T	p.Arg156Ter	p.R156*	ENST00000391945	NM_000400.3	156	Cga/Tga																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905055	50905055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	152	476	1	ENST00000440232.2:c.342delG	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	113	Ggg/gg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39262363	39262363	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	111	483	1	ENST00000402219.2:c.1064A>G	p.Glu355Gly	p.E355G	ENST00000402219	NM_005633.3	355	gAa/gGa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC	rs1361078163		P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	98	397	0	ENST00000234420.5:c.3260_3261dup	p.Phe1088ProfsTer3	p.F1088Pfs*3	ENST00000234420	NM_000179.2	1085	acc/aCCcc																																																																															
REL	5966	MSKCC	GRCh37	2	61145432	61145432	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	92	283	0	ENST00000295025.8:c.640+2T>C		p.X214_splice	ENST00000295025	NM_002908.2	214																																																																																
TMEM127	55654	MSKCC	GRCh37	2	96930896	96930896	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	217	609	0	ENST00000258439.3:c.224T>C	p.Val75Ala	p.V75A	ENST00000258439	NM_001193304.2	75	gTg/gCg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182127	99182127	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	123	375	0	ENST00000074304.5:c.2192A>G	p.Asp731Gly	p.D731G	ENST00000074304	NM_001134224.1	731	gAc/gGc																																																																															
BARD1	580	MSKCC	GRCh37	2	215645985	215645985	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	88	495	0	ENST00000260947.4:c.613A>C	p.Lys205Gln	p.K205Q	ENST00000260947	NM_000465.2	205	Aag/Cag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661341	227661341	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	94	625	0	ENST00000305123.5:c.2114delG	p.Gly705AlafsTer29	p.G705Afs*29	ENST00000305123	NM_005544.2	705	gGc/gc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	202	662	1	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	64	240	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46276064	46276064	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	184	563	0	ENST00000371998.3:c.3500C>A	p.Pro1167His	p.P1167H	ENST00000371998		1167	cCc/cAc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62325779	62325779	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	173	612	0	ENST00000508582.2:c.3119T>C	p.Leu1040Pro	p.L1040P	ENST00000508582		1040	cTg/cCg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866364	42866364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	263	643	3	ENST00000398585.3:c.268G>A	p.Ala90Thr	p.A90T	ENST00000398585	NM_001135099.1	90	Gcc/Acc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29092975	29092975	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	138	439	0	ENST00000328354.6:c.1009T>C	p.Tyr337His	p.Y337H	ENST00000328354	NM_007194.3	337	Tac/Cac																																																																															
RAC2	5880	MSKCC	GRCh37	22	37627274	37627274	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	142	685	0	ENST00000249071.6:c.445A>C	p.Ile149Leu	p.I149L	ENST00000249071	NM_002872.4	149	Att/Ctt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	252	397	2	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
MLH1	4292	MSKCC	GRCh37	3	37090096	37090096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	164	438	0	ENST00000231790.2:c.1985C>T	p.Thr662Ile	p.T662I	ENST00000231790	NM_000249.3	662	aCt/aTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	264	344	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280799	41280799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	144	330	0	ENST00000349496.5:c.2312G>A	p.Ser771Asn	p.S771N	ENST00000349496	NM_001904.3	771	aGc/aAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163376	47163377	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	73	361	0	ENST00000409792.3:c.2749dup	p.Ser917LysfsTer18	p.S917Kfs*18	ENST00000409792	NM_014159.6	917	agt/aAgt																																																																															
RHOA	387	MSKCC	GRCh37	3	49412898	49412898	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	186	640	0	ENST00000418115.1:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000418115	NM_001664.2	42	tAt/tGt																																																																															
MST1	4485	MSKCC	GRCh37	3	49722906	49722906	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	42	136	1	ENST00000449682.2:c.1421del	p.Pro474GlnfsTer52	p.P474Qfs*52	ENST00000449682	NM_020998.3	474	cCa/ca																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119635000	119635000	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201787969		P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	63	254	0	ENST00000316626.5:c.499C>T	p.Arg167Ter	p.R167*	ENST00000316626		167	Cga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213846	66213846	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	152	452	0	ENST00000273854.3:c.2584T>C	p.Trp862Arg	p.W862R	ENST00000273854	NM_004439.5	862	Tgg/Cgg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	75	309	0	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535298	66535298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	187	502	0	ENST00000273854.3:c.163G>A	p.Ala55Thr	p.A55T	ENST00000273854	NM_004439.5	55	Gcc/Acc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539104	187539104	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	163	497	0	ENST00000441802.2:c.8636del	p.Lys2879ArgfsTer49	p.K2879Rfs*49	ENST00000441802	NM_005245.3	2879	aAg/ag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161675	56161675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	21	409	0	ENST00000399503.3:c.1172A>G	p.Lys391Arg	p.K391R	ENST00000399503	NM_005921.1	391	aAa/aGa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592171	67592171	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	70	212	1	ENST00000274335.5:c.1985+2T>C		p.X662_splice	ENST00000274335		662																																																																																
APC	324	MSKCC	GRCh37	5	112151243	112151243	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	142	412	0	ENST00000257430.4:c.886A>G	p.Ser296Gly	p.S296G	ENST00000257430	NM_000038.5	296	Agc/Ggc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	75	252	6	ENST00000265335.6:c.2801delA	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131972877	131972877	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	117	339	0	ENST00000265335.6:c.3460A>G	p.Thr1154Ala	p.T1154A	ENST00000265335		1154	Acc/Gcc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513503	149513503	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	158	570	0	ENST00000261799.4:c.700A>G	p.Met234Val	p.M234V	ENST00000261799	NM_002609.3	234	Atg/Gtg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	175	616	2	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324494	31324494	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs9266161		P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	229	590	1	ENST00000412585.2:c.314T>C	p.Leu105Pro	p.L105P	ENST00000412585	NM_005514.6	105	cTg/cCg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168761	32168761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	209	584	0	ENST00000375023.3:c.4162G>T	p.Asp1388Tyr	p.D1388Y	ENST00000375023	NM_004557.3	1388	Gat/Tat																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793888	89793888	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	101	335	0	ENST00000336032.3:c.961del	p.Thr321ArgfsTer16	p.T321Rfs*16	ENST00000336032	NM_006813.2	319	ttA/tt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521848	157521848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	120	406	1	ENST00000346085.5:c.4120C>T	p.Arg1374Cys	p.R1374C	ENST00000346085	NM_020732.3	1374	Cgc/Tgc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	198	586	5	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971292	13971292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	153	458	0	ENST00000405192.2:c.637C>T	p.Arg213Cys	p.R213C	ENST00000405192	NM_001163147.1	213	Cgc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55266502	55266502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	189	472	1	ENST00000275493.2:c.2794C>T	p.Arg932Cys	p.R932C	ENST00000275493	NM_005228.3	932	Cgc/Tgc																																																																															
MET	4233	MSKCC	GRCh37	7	116339917	116339917	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	132	435	0	ENST00000397752.3:c.779A>G	p.Tyr260Cys	p.Y260C	ENST00000397752	NM_000245.2	260	tAc/tGc																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	188	600	0	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
EZH2	2146	MSKCC	GRCh37	7	148543692	148543692	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	42	278	0	ENST00000320356.2:c.118-2del		p.X40_splice	ENST00000320356	NM_004456.4	40																																																																																
SOX17	64321	MSKCC	GRCh37	8	55370958	55370958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	223	540	0	ENST00000297316.4:c.260C>T	p.Ala87Val	p.A87V	ENST00000297316	NM_022454.3	87	gCg/gTg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141567295	141567295	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	228	604	0	ENST00000220592.5:c.919A>G	p.Thr307Ala	p.T307A	ENST00000220592	NM_012154.3	307	Acg/Gcg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98244261	98244261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	145	551	1	ENST00000331920.6:c.716C>T	p.Ala239Val	p.A239V	ENST00000331920	NM_000264.3	239	gCg/gTg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135798875	135798875	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	82	242	0	ENST00000298552.3:c.368A>G	p.Asp123Gly	p.D123G	ENST00000298552	NM_001162426.1	123	gAc/gGc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324892	31324892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs765875917		P-0037940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	37	381	0	ENST00000412585.2:c.44del	p.Ala15GlyfsTer5	p.A15Gfs*5	ENST00000412585	NM_005514.6	15	gCg/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0037989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	123	896	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	62	502	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971077	21971077	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	22	222	0	ENST00000304494.5:c.281T>C	p.Leu94Pro	p.L94P	ENST00000304494	NM_000077.4	94	cTg/cCg																																																																															
SRC	6714	MSKCC	GRCh37	20	36031215	36031215	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	132	940	1	ENST00000358208.4:c.1334A>G	p.Lys445Arg	p.K445R	ENST00000358208		445	aAg/aGg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713825	30713825	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	110	792	1	ENST00000359013.4:c.1225A>T	p.Asn409Tyr	p.N409Y	ENST00000359013	NM_001024847.2	409	Aat/Tat																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004570	150004573	+	frameshift_variant	Frame_Shift_Del	DEL	TAGT	TAGT	-			P-0037989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	110	784	0	ENST00000253339.5:c.1652_1655del	p.Asn551IlefsTer96	p.N551Ifs*96	ENST00000253339		551	aACTAt/at																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739873	41739873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	66	544	0	ENST00000242208.4:c.100G>A	p.Asp34Asn	p.D34N	ENST00000242208	NM_002192.2	34	Gac/Aac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	10	327	0	ENST00000263967.3:c.3132T>G	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaG																																																																															
AKT2	208	MSKCC	GRCh37	19	40743959	40743959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	116	662	0	ENST00000392038.2:c.748G>A	p.Glu250Lys	p.E250K	ENST00000392038	NM_001626.4	250	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111475	8111482	+	frameshift_variant	Frame_Shift_Del	DEL	CAGACCAC	CAGACCAC	-			P-0038672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	78	581	0	ENST00000346208.3:c.963_970del	p.Gln321HisfsTer28	p.Q321Hfs*28	ENST00000346208		321	CAGACCACc/c																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658809	3658818	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTAAAGTC	CTTTAAAGTC	-			P-0038672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	114	661	0	ENST00000294008.3:c.148_157del	p.Asp50AsnfsTer10	p.D50Nfs*10	ENST00000294008	NM_032444.2	50	GACTTTAAAGaa/aa																																																																															
ACVR1	90	MSKCC	GRCh37	2	158622553	158622553	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	40	465	0	ENST00000263640.3:c.946C>A	p.Leu316Ile	p.L316I	ENST00000263640	NM_001105.4	316	Ctt/Att																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0038694-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	29	500	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087480	27087480	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038694-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			826	64	750	0	ENST00000324856.7:c.2055del	p.Ser686ProfsTer56	p.S686Pfs*56	ENST00000324856	NM_006015.4	685	aCc/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	75	344	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0039172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	59	453	1	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132428	11132428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	138	710	0	ENST00000344626.4:c.2644G>A	p.Glu882Lys	p.E882K	ENST00000344626	NM_003072.3	882	Gaa/Aaa																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631839	90631839	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	102	582	0	ENST00000330062.3:c.514A>G	p.Arg172Gly	p.R172G	ENST00000330062	NM_002168.2	172	Agg/Ggg																																																																															
APC	324	MSKCC	GRCh37	5	112175788	112175788	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	95	232	0	ENST00000257430.4:c.4497delA	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1499	ggA/gg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509873	106509873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	90	577	0	ENST00000359195.3:c.1867G>A	p.Asp623Asn	p.D623N	ENST00000359195	NM_002649.2	623	Gat/Aat																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134269	11134269	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	111	620	0	ENST00000344626.4:c.2935C>T	p.Arg979Ter	p.R979*	ENST00000344626	NM_003072.3	979	Cga/Tga																																																																															
TET1	80312	MSKCC	GRCh37	10	70404650	70404650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	52	515	0	ENST00000373644.4:c.2164G>A	p.Val722Met	p.V722M	ENST00000373644	NM_030625.2	722	Gtg/Atg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701191	43701191	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	129	599	0	ENST00000382044.4:c.5504G>C	p.Trp1835Ser	p.W1835S	ENST00000382044	NM_001141980.1	1835	tGg/tCg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412014	63412014	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	101	651	0	ENST00000330258.3:c.1153G>T	p.Glu385Ter	p.E385*	ENST00000330258	NM_152424.3	385	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	61	358	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0039437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	79	402	2	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0039437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	33	309	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0039437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	140	915	3	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7576853	7576853	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0039437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	129	555	2	ENST00000269305.4:c.993G>C	p.Gln331His	p.Q331H	ENST00000269305	NM_001126112.2	331	caG/caC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539003	187539003	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	115	488	1	ENST00000441802.2:c.8737G>T	p.Asp2913Tyr	p.D2913Y	ENST00000441802	NM_005245.3	2913	Gat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112173868	112173870	+	frameshift_variant	Frame_Shift_Del	DEL	TCT	TCT	G			P-0039437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	59	334	0	ENST00000257430.4:c.2577_2579delinsG	p.Leu860ArgfsTer51	p.L860Rfs*51	ENST00000257430	NM_000038.5	859	ggTCTa/ggGa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	164	553	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0039582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	123	507	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1327776	1327776	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	86	528	0	ENST00000381566.1:c.105C>G	p.Ile35Met	p.I35M	ENST00000381566		35	atC/atG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0039667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	53	227	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
CD274	29126	MSKCC	GRCh37	9	5457315	5457315	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	75	223	0	ENST00000381577.3:c.289G>C	p.Ala97Pro	p.A97P	ENST00000381577	NM_014143.3	97	Gct/Cct																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260899	16260899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	119	401	0	ENST00000375759.3:c.8164C>T	p.Pro2722Ser	p.P2722S	ENST00000375759	NM_015001.2	2722	Cca/Tca																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115974	8115991	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	CGCCATGGGTTAGAGCCC	CGCCATGGGTTAGAGCCC	AGCA			P-0039667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	54	266	1	ENST00000346208.3:c.1320_*5delinsAGCA		p.*440*	ENST00000346208		440																																																																																
PIK3C2G	5288	MSKCC	GRCh37	12	18435302	18435302	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	91	296	0	ENST00000266497.5:c.287T>G	p.Leu96Arg	p.L96R	ENST00000266497		96	cTc/cGc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46125025	46125041	+	frameshift_variant	Frame_Shift_Del	DEL	AAATTGTTGAAGAGTTC	AAATTGTTGAAGAGTTC	-			P-0039667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	35	227	0	ENST00000334344.6:c.214_230del	p.Ile72LeufsTer7	p.I72Lfs*7	ENST00000334344	NM_152641.2	71	gAAATTGTTGAAGAGTTC/g																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665341	138665341	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	175	527	0	ENST00000330315.3:c.224T>C	p.Leu75Pro	p.L75P	ENST00000330315	NM_023067.3	75	cTc/cCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	268	670	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0039752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	232	587	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	128	272	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81891943	81891943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	104	559	0	ENST00000359376.3:c.413C>T	p.Thr138Met	p.T138M	ENST00000359376	NM_002661.3	138	aCg/aTg																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62305417	62305417	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs748022323		P-0039752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	121	709	0	ENST00000482936.1:c.890C>T	p.Pro297Leu	p.P297L	ENST00000482936		297	cCg/cTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18715683	18715683	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	48	267	0	ENST00000266497.5:c.3514T>G	p.Leu1172Val	p.L1172V	ENST00000266497		1172	Ttg/Gtg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539768	187539768	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	93	431	0	ENST00000441802.2:c.7972A>G	p.Lys2658Glu	p.K2658E	ENST00000441802	NM_005245.3	2658	Aag/Gag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31410888	31410888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	122	716	0	ENST00000344624.3:c.3632C>T	p.Ala1211Val	p.A1211V	ENST00000344624		1211	gCg/gTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69058444	69058444	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0039752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	53	245	0	ENST00000288368.4:c.4088A>T	p.Asn1363Ile	p.N1363I	ENST00000288368	NM_024870.2	1363	aAt/aTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	109	343	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230597	46230597	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	65	380	0	ENST00000334344.6:c.846A>C	p.Glu282Asp	p.E282D	ENST00000334344	NM_152641.2	282	gaA/gaC																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	87	746	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602326	10602326	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	99	774	0	ENST00000171111.5:c.1252del	p.Val418TrpfsTer40	p.V418Wfs*40	ENST00000171111	NM_203500.1	418	Gtg/tg																																																																															
BARD1	580	MSKCC	GRCh37	2	215674221	215674221	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	87	706	1	ENST00000260947.4:c.73G>T	p.Ala25Ser	p.A25S	ENST00000260947	NM_000465.2	25	Gcc/Tcc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066687	94066687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	57	396	1	ENST00000369303.4:c.1072G>T	p.Gly358Trp	p.G358W	ENST00000369303	NM_004440.3	358	Ggg/Tgg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2954983	2954983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	88	569	0	ENST00000396946.4:c.2727G>T	p.Lys909Asn	p.K909N	ENST00000396946	NM_032415.4	909	aaG/aaT																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540370	23540370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	65	504	0	ENST00000380871.4:c.33G>T	p.Glu11Asp	p.E11D	ENST00000380871	NM_006167.3	11	gaG/gaT																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	123	427	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	149	1033	1	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1185	133	1206	1	ENST00000269305.4:c.405C>A	p.Cys135Ter	p.C135*	ENST00000269305	NM_001126112.2	135	tgC/tgA																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856019	111856019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	103	424	0	ENST00000341259.2:c.70C>T	p.Arg24Trp	p.R24W	ENST00000341259	NM_005475.2	24	Cgg/Tgg																																																																															
TET1	80312	MSKCC	GRCh37	10	70451272	70451272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	78	852	1	ENST00000373644.4:c.6112C>T	p.Arg2038Cys	p.R2038C	ENST00000373644	NM_030625.2	2038	Cgt/Tgt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959109	2959109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1424	91	1024	0	ENST00000396946.4:c.2407G>A	p.Val803Ile	p.V803I	ENST00000396946	NM_032415.4	803	Gtc/Atc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2977594	2977594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1491	116	1019	0	ENST00000396946.4:c.1090C>T	p.Arg364Cys	p.R364C	ENST00000396946	NM_032415.4	364	Cgc/Tgc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25468148	25468148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1187	141	1022	2	ENST00000264709.3:c.1528G>A	p.Val510Ile	p.V510I	ENST00000264709	NM_175629.2	510	Gtt/Att																																																																															
HGF	3082	MSKCC	GRCh37	7	81336606	81336606	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	46	344	0	ENST00000222390.5:c.1616G>A	p.Arg539Gln	p.R539Q	ENST00000222390	NM_000601.4	539	cGa/cAa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119791	70119791	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	233	913	0	ENST00000245479.2:c.793C>T	p.Gln265Ter	p.Q265*	ENST00000245479	NM_000346.3	265	Cag/Tag																																																																															
NUF2	83540	MSKCC	GRCh37	1	163315580	163315580	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	30	407	0	ENST00000271452.3:c.920G>C	p.Arg307Thr	p.R307T	ENST00000271452	NM_145697.2	307	aGg/aCg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198260798	198260798	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	107	543	0	ENST00000335508.6:c.3521A>G	p.Glu1174Gly	p.E1174G	ENST00000335508	NM_012433.2	1174	gAa/gGa																																																																															
SESN1	27244	MSKCC	GRCh37	6	109322571	109322571	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	108	765	0	ENST00000436639.2:c.466A>T	p.Ser156Cys	p.S156C	ENST00000436639	NM_014454.2	156	Agt/Tgt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372064	55372064	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	85	377	0	ENST00000297316.4:c.754A>G	p.Ser252Gly	p.S252G	ENST00000297316	NM_022454.3	252	Agc/Ggc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907467	32907467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	153	202	0	ENST00000380152.3:c.1852G>A	p.Ala618Thr	p.A618T	ENST00000380152		618	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0040061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	492	781	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0040061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	93	237	1	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0040061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	18	178	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	195	362	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603041	48603041	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	79	283	0	ENST00000342988.3:c.1342C>T	p.Gln448Ter	p.Q448*	ENST00000342988	NM_005359.5	448	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	374	690	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	124	273	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880998	37880998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	399	715	0	ENST00000269571.5:c.2327G>T	p.Gly776Val	p.G776V	ENST00000269571		776	gGt/gTt																																																																															
NUF2	83540	MSKCC	GRCh37	1	163325224	163325224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	42	287	1	ENST00000271452.3:c.1360G>A	p.Glu454Lys	p.E454K	ENST00000271452	NM_145697.2	454	Gaa/Aaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66218770	66218770	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	96	240	0	ENST00000273854.3:c.2288C>G	p.Thr763Arg	p.T763R	ENST00000273854	NM_004439.5	763	aCa/aGa																																																																															
APC	324	MSKCC	GRCh37	5	112173364	112173365	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	109	271	0	ENST00000257430.4:c.2075dup	p.Lys693Ter	p.K693*	ENST00000257430	NM_000038.5	691	-/C																																																																															
APC	324	MSKCC	GRCh37	5	112178345	112178345	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	196	366	0	ENST00000257430.4:c.7054A>T	p.Ser2352Cys	p.S2352C	ENST00000257430	NM_000038.5	2352	Agt/Tgt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967221	93967221	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	122	338	0	ENST00000369303.4:c.2131A>C	p.Ile711Leu	p.I711L	ENST00000369303	NM_004440.3	711	Ata/Cta																																																																															
RET	5979	MSKCC	GRCh37	10	43595967	43595967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	121	686	0	ENST00000355710.3:c.134C>T	p.Ala45Val	p.A45V	ENST00000355710	NM_020975.4	45	gCa/gTa																																																																															
ATM	472	MSKCC	GRCh37	11	108199949	108199949	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0040084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	118	140	0	ENST00000278616.4:c.7291A>T	p.Lys2431Ter	p.K2431*	ENST00000278616	NM_000051.3	2431	Aaa/Taa																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197348	26197348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	173	334	0	ENST00000356476.2:c.131C>T	p.Pro44Leu	p.P44L	ENST00000356476		44	cCc/cTc																																																																															
CD79B	974	MSKCC	GRCh37	17	62007746	62007748	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTG	CTG	-			P-0040084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	257	284	0	ENST00000392795.3:c.122-3_122-1del		p.X41_splice	ENST00000392795	NM_001039933.1	41																																																																																
BCL6	604	MSKCC	GRCh37	3	187447337	187447337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	292	461	0	ENST00000232014.4:c.856C>T	p.Pro286Ser	p.P286S	ENST00000232014	NM_001130845.1	286	Ccc/Tcc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922968	44922968	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	225	209	0	ENST00000377967.4:c.1829T>G	p.Leu610Arg	p.L610R	ENST00000377967	NM_021140.2	610	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs864622237		P-0040123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	305	526	0	ENST00000269305.4:c.700T>G	p.Tyr234Asp	p.Y234D	ENST00000269305	NM_001126112.2	234	Tac/Gac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89456470	89456470	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147450955		P-0040123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	63	312	0	ENST00000336596.2:c.1646C>T	p.Ala549Val	p.A549V	ENST00000336596	NM_005233.5	549	gCg/gTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221236	1221236	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	70	664	0	ENST00000326873.7:c.762del	p.Phe255SerfsTer32	p.F255Sfs*32	ENST00000326873	NM_000455.4	253	taC/ta																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3842052	3842052	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	117	369	0	ENST00000262367.5:c.1260G>C	p.Lys420Asn	p.K420N	ENST00000262367	NM_004380.2	420	aaG/aaC																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644912	67644920	+	inframe_deletion	In_Frame_Del	DEL	GATGGTGAT	GATGGTGAT	-			P-0040123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	151	510	0	ENST00000264010.4:c.182_190del	p.Val61_Met63del	p.V61_M63del	ENST00000264010	NM_006565.3	59	caGATGGTGATg/cag																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59886064	59886064	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	90	410	0	ENST00000259008.2:c.682G>C	p.Glu228Gln	p.E228Q	ENST00000259008	NM_032043.2	228	Gag/Cag																																																																															
STK11	6794	MSKCC	GRCh37	19	1220498	1220507	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCCGAGGTA	GGCCGAGGTA	-			P-0040123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	54	595	0	ENST00000326873.7:c.594_597+6del		p.X198_splice	ENST00000326873	NM_000455.4	198																																																																																
STK11	6794	MSKCC	GRCh37	19	1220642	1220661	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCCCGAGATTGCCAACG	GCCGCCCGAGATTGCCAACG	-			P-0040123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	65	636	0	ENST00000326873.7:c.663_682del	p.Pro222GlyfsTer37	p.P222Gfs*37	ENST00000326873	NM_000455.4	220	caGCCGCCCGAGATTGCCAACGgc/cagc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39239469	39239469	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	176	352	0	ENST00000402219.2:c.2188G>C	p.Val730Leu	p.V730L	ENST00000402219	NM_005633.3	730	Gtt/Ctt																																																																															
MET	4233	MSKCC	GRCh37	7	116340267	116340267	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	103	272	0	ENST00000397752.3:c.1129A>C	p.Ile377Leu	p.I377L	ENST00000397752	NM_000245.2	377	Atc/Ctc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0040164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	175	525	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112174580	112174580	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	143	325	0	ENST00000257430.4:c.3289G>T	p.Glu1097Ter	p.E1097*	ENST00000257430	NM_000038.5	1097	Gaa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	14	340	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	139	425	0	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87317267	87317267	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	101	335	0	ENST00000277120.3:c.292A>G	p.Ile98Val	p.I98V	ENST00000277120		98	Att/Gtt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457281	67457315	+	frameshift_variant	Frame_Shift_Del	DEL	TGTCATCTACTGCCGCCTGTGGCGATGGCCAGACC	TGTCATCTACTGCCGCCTGTGGCGATGGCCAGACC	-			P-0040164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	43	477	0	ENST00000327367.4:c.257_291del	p.Val86AlafsTer13	p.V86Afs*13	ENST00000327367	NM_005902.3	85	caTGTCATCTACTGCCGCCTGTGGCGATGGCCAGACCtg/catg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412313	63412314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	200	602	0	ENST00000330258.3:c.853dup	p.His285ProfsTer2	p.H285Pfs*2	ENST00000330258	NM_152424.3	285	cat/cCat																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46531788	46531788	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	126	388	0	ENST00000262741.5:c.559C>T	p.Gln187Ter	p.Q187*	ENST00000262741	NM_003629.3	187	Cag/Tag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330511	65330511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	182	441	0	ENST00000342505.4:c.1135G>A	p.Glu379Lys	p.E379K	ENST00000342505	NM_002227.2	379	Gag/Aag																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246490544	246490544	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	159	479	0	ENST00000388985.4:c.490C>T	p.Gln164Ter	p.Q164*	ENST00000388985		164	Cag/Tag																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527795	103527795	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	139	366	0	ENST00000355739.4:c.3103G>C	p.Glu1035Gln	p.E1035Q	ENST00000355739	NM_000123.3	1035	Gaa/Caa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061461	38061461	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	423	553	0	ENST00000250448.2:c.528C>G	p.Ile176Met	p.I176M	ENST00000250448	NM_004496.3	176	atC/atG																																																																															
AKT1	207	MSKCC	GRCh37	14	105237107	105237107	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	184	583	0	ENST00000349310.3:c.1338G>T	p.Met446Ile	p.M446I	ENST00000349310	NM_001014432.1	446	atG/atT																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658833	3658833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	192	603	1	ENST00000294008.3:c.133G>A	p.Asp45Asn	p.D45N	ENST00000294008	NM_032444.2	45	Gat/Aat																																																																															
CDH1	999	MSKCC	GRCh37	16	68835751	68835752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	192	574	0	ENST00000261769.5:c.343dupA	p.Thr115AsnfsTer53	p.T115Nfs*53	ENST00000261769	NM_004360.3	114	-/A																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832025	72832025	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	176	567	0	ENST00000268489.5:c.4556C>G	p.Ser1519Ter	p.S1519*	ENST00000268489	NM_006885.3	1519	tCa/tGa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341230	89341230	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	197	498	0	ENST00000301030.4:c.7705G>T	p.Glu2569Ter	p.E2569*	ENST00000301030	NM_001256183.1	2569	Gag/Tag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89858892	89858892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	220	651	0	ENST00000389301.3:c.1070C>T	p.Ser357Leu	p.S357L	ENST00000389301	NM_000135.2	357	tCa/tTa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011144	12011144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	96	335	0	ENST00000353533.5:c.551C>T	p.Ser184Leu	p.S184L	ENST00000353533	NM_003010.3	184	tCg/tTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879583	37879583	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	255	575	0	ENST00000269571.5:c.1958C>G	p.Ser653Cys	p.S653C	ENST00000269571		653	tCc/tGc																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770135	56770135	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	145	481	0	ENST00000337432.4:c.131C>G	p.Ser44Cys	p.S44C	ENST00000337432	NM_058216.2	44	tCc/tGc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262160	10262160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	220	685	0	ENST00000340748.4:c.2131G>A	p.Glu711Lys	p.E711K	ENST00000340748		711	Gag/Aag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610242	10610242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	245	773	1	ENST00000171111.5:c.468G>A	p.Met156Ile	p.M156I	ENST00000171111	NM_203500.1	156	atG/atA																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610505	10610505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	274	621	2	ENST00000171111.5:c.205G>A	p.Glu69Lys	p.E69K	ENST00000171111	NM_203500.1	69	Gag/Aag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610685	10610685	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187892356		P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	215	527	1	ENST00000171111.5:c.25G>A	p.Gly9Arg	p.G9R	ENST00000171111	NM_203500.1	9	Ggg/Agg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965421	18965421	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	133	388	0	ENST00000262803.5:c.1168G>C	p.Glu390Gln	p.E390Q	ENST00000262803	NM_002911.3	390	Gag/Cag																																																																															
AXL	558	MSKCC	GRCh37	19	41748850	41748850	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138698106		P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	237	657	0	ENST00000301178.4:c.1375G>A	p.Val459Met	p.V459M	ENST00000301178	NM_021913.4	459	Gtg/Atg																																																																															
ERF	2077	MSKCC	GRCh37	19	42754685	42754685	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	85	297	0	ENST00000222329.4:c.55G>C	p.Glu19Gln	p.E19Q	ENST00000222329	NM_006494.2	19	Gag/Cag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25991658	25991658	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	139	422	0	ENST00000435504.4:c.584C>A	p.Ser195Ter	p.S195*	ENST00000435504		195	tCa/tAa																																																																															
EP300	2033	MSKCC	GRCh37	22	41547861	41547861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	129	456	0	ENST00000263253.7:c.2842G>A	p.Glu948Lys	p.E948K	ENST00000263253	NM_001429.3	948	Gaa/Aaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41268787	41268787	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	180	489	0	ENST00000349496.5:c.1025G>C	p.Arg342Thr	p.R342T	ENST00000349496	NM_001904.3	342	aGa/aCa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610700	52610700	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	80	363	0	ENST00000394830.3:c.3473G>A	p.Trp1158Ter	p.W1158*	ENST00000394830	NM_018313.4	1158	tGg/tAg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138478177	138478177	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	84	374	0	ENST00000289153.2:c.9C>A	p.Phe3Leu	p.F3L	ENST00000289153	NM_006219.2	3	ttC/ttA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	135	377	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KIT	3815	MSKCC	GRCh37	4	55593470	55593470	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	137	358	0	ENST00000288135.5:c.1627C>G	p.Leu543Val	p.L543V	ENST00000288135	NM_000222.2	543	Ctg/Gtg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680286	30680286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	260	729	0	ENST00000376406.3:c.1433G>C	p.Arg478Thr	p.R478T	ENST00000376406	NM_014641.2	478	aGa/aCa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681429	30681429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	101	423	1	ENST00000376406.3:c.583G>A	p.Glu195Lys	p.E195K	ENST00000376406	NM_014641.2	195	Gag/Aag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163297	32163297	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	254	810	0	ENST00000375023.3:c.5929G>C	p.Glu1977Gln	p.E1977Q	ENST00000375023	NM_004557.3	1977	Gag/Cag																																																																															
PIM1	5292	MSKCC	GRCh37	6	37138775	37138775	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	188	618	0	ENST00000373509.5:c.208G>C	p.Glu70Gln	p.E70Q	ENST00000373509	NM_002648.3	70	Gag/Cag																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001464	150001464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	190	539	1	ENST00000253339.5:c.2140G>A	p.Gly714Arg	p.G714R	ENST00000253339		714	Gga/Aga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976764	2976764	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	194	667	0	ENST00000396946.4:c.1248G>C	p.Glu416Asp	p.E416D	ENST00000396946	NM_032415.4	416	gaG/gaC																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38139062	38139062	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	179	506	0	ENST00000317025.8:c.3541G>C	p.Glu1181Gln	p.E1181Q	ENST00000317025	NM_023034.1	1181	Gaa/Caa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742108	145742108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	248	653	0	ENST00000428558.2:c.395G>A	p.Arg132Lys	p.R132K	ENST00000428558	NM_004260.3	132	aGa/aAa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974765	21974768	+	frameshift_variant	Frame_Shift_Del	DEL	GCCG	GCCG	AC			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	261	306	1	ENST00000304494.5:c.59_62delinsGT	p.Ala20GlyfsTer23	p.A20Gfs*23	ENST00000304494	NM_000077.4	20	gCGGCc/gGTc																																																																															
FANCC	2176	MSKCC	GRCh37	9	97934369	97934369	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	130	377	0	ENST00000289081.3:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000289081	NM_000136.2	136	Caa/Taa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39911378	39911378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	148	420	0	ENST00000378444.4:c.5252C>T	p.Ser1751Leu	p.S1751L	ENST00000378444	NM_001123385.1	1751	tCa/tTa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44945137	44945137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	173	480	0	ENST00000377967.4:c.3461C>T	p.Ser1154Leu	p.S1154L	ENST00000377967	NM_021140.2	1154	tCa/tTa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123179110	123179110	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	164	507	0	ENST00000218089.9:c.559C>T	p.Gln187Ter	p.Q187*	ENST00000218089	NM_001042749.1	187	Caa/Taa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	105	410	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	65	272	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	80	210	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
MAX	4149	MSKCC	GRCh37	14	65544703	65544703	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	120	559	1	ENST00000358664.4:c.223C>T	p.Arg75Ter	p.R75*	ENST00000358664	NM_002382.4	75	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	78	385	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396382	396382	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200741961		P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	156	662	1	ENST00000262320.3:c.644C>T	p.Ser215Leu	p.S215L	ENST00000262320	NM_003502.3	215	tCg/tTg																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	118	456	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
NF1	4763	MSKCC	GRCh37	17	29552152	29552152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	56	256	0	ENST00000358273.4:c.1885G>A	p.Gly629Arg	p.G629R	ENST00000358273	NM_001042492.2	629	Ggg/Agg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105553	27105553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	126	440	2	ENST00000324856.7:c.5164C>T	p.Arg1722Ter	p.R1722*	ENST00000324856	NM_006015.4	1722	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	117	591	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154887	2154887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	135	582	2	ENST00000434045.2:c.334G>A	p.Ala112Thr	p.A112T	ENST00000434045	NM_001127598.1	112	Gca/Aca																																																																															
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	109	389	0	ENST00000558401.1:c.1A>T	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Ttg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	112	363	5	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109935	115109935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	148	601	0	ENST00000257566.3:c.1943C>T	p.Pro648Leu	p.P648L	ENST00000257566	NM_016569.3	648	cCg/cTg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523072	25523072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	88	615	0	ENST00000264709.3:c.113G>A	p.Arg38His	p.R38H	ENST00000264709	NM_175629.2	38	cGc/cAc																																																																															
TERT	7015	MSKCC	GRCh37	5	1268701	1268701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	181	743	0	ENST00000310581.5:c.2516C>T	p.Thr839Met	p.T839M	ENST00000310581	NM_198253.2	839	aCg/aTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246488	46246488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	55	225	0	ENST00000334344.6:c.4582G>A	p.Ala1528Thr	p.A1528T	ENST00000334344	NM_152641.2	1528	Gca/Aca																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943789	71943789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	156	652	2	ENST00000298229.2:c.1832G>A	p.Arg611His	p.R611H	ENST00000298229	NM_001567.3	611	cGc/cAc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500450	149500450	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs112566969		P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	110	453	1	ENST00000261799.4:c.2586+1G>A		p.X862_splice	ENST00000261799	NM_002609.3	862																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67589609	67589610	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	58	139	0	ENST00000274335.5:c.1378dupA	p.Ser460LysfsTer5	p.S460Kfs*5	ENST00000274335		458	gaa/gAaa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864217	57864217	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	107	534	0	ENST00000228682.2:c.1694T>C	p.Phe565Ser	p.F565S	ENST00000228682	NM_005269.2	565	tTc/tCc																																																																															
POLE	5426	MSKCC	GRCh37	12	133233757	133233759	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	115	413	0	ENST00000320574.5:c.3545_3547del	p.Lys1182del	p.K1182del	ENST00000320574	NM_006231.2	1182	aAGAtc/atc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15967457	15967457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	134	481	2	ENST00000268712.3:c.5146C>T	p.Arg1716Trp	p.R1716W	ENST00000268712	NM_006311.3	1716	Cgg/Tgg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637540	52637540	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	37	213	0	ENST00000394830.3:c.2776del	p.Arg926GlufsTer82	p.R926Efs*82	ENST00000394830	NM_018313.4	926	Aga/ga																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1977024	1977024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	69	600	2	ENST00000382891.5:c.3518C>T	p.Thr1173Met	p.T1173M	ENST00000382891	NM_133335.3	1173	aCg/aTg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149504391	149504391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	124	484	4	ENST00000261799.4:c.1811G>A	p.Arg604His	p.R604H	ENST00000261799	NM_002609.3	604	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097609	27097609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	106	436	0	ENST00000324856.7:c.3199-1G>T		p.X1067_splice	ENST00000324856	NM_006015.4	1067																																																																																
SESN2	83667	MSKCC	GRCh37	1	28598251	28598251	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	205	704	1	ENST00000253063.3:c.223C>T	p.Arg75Ter	p.R75*	ENST00000253063	NM_031459.4	75	Cga/Tga																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156841438	156841438	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	130	501	0	ENST00000524377.1:c.744del	p.Leu249Ter	p.L249*	ENST00000524377	NM_002529.3	247	ctG/ct																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746056	162746056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	103	335	0	ENST00000367921.3:c.2179G>A	p.Ala727Thr	p.A727T	ENST00000367921	NM_006182.2	727	Gct/Act																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114799802	114799802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	113	430	0	ENST00000543371.1:c.469C>A	p.Pro157Thr	p.P157T	ENST00000543371	NM_001198531.1	157	Cca/Aca																																																																															
CCND1	595	MSKCC	GRCh37	11	69458649	69458649	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	102	417	0	ENST00000227507.2:c.464T>C	p.Met155Thr	p.M155T	ENST00000227507	NM_053056.2	155	aTg/aCg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	498145	498145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	68	442	0	ENST00000399788.2:c.113G>A	p.Arg38His	p.R38H	ENST00000399788	NM_001042603.1	38	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431603	49431603	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	145	633	1	ENST00000301067.7:c.9536C>G	p.Thr3179Arg	p.T3179R	ENST00000301067	NM_003482.3	3179	aCa/aGa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445472	49445472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	186	768	1	ENST00000301067.7:c.1994C>T	p.Pro665Leu	p.P665L	ENST00000301067	NM_003482.3	665	cCg/cTg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609330	81609330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	62	226	0	ENST00000298171.2:c.928C>T	p.Arg310Cys	p.R310C	ENST00000298171	NM_000369.2	310	Cgc/Tgc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820591	3820591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	173	604	0	ENST00000262367.5:c.2860G>A	p.Ala954Thr	p.A954T	ENST00000262367	NM_004380.2	954	Gcc/Acc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900703	3900703	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	148	483	0	ENST00000262367.5:c.393del	p.Ser132AlafsTer20	p.S132Afs*20	ENST00000262367	NM_004380.2	131	ccC/cc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30133172	30133172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	103	383	0	ENST00000263025.4:c.326C>T	p.Ala109Val	p.A109V	ENST00000263025	NM_002746.2	109	gCg/gTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16089881	16089881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	70	290	0	ENST00000268712.3:c.229C>A	p.Pro77Thr	p.P77T	ENST00000268712	NM_006311.3	77	Cca/Aca																																																																															
INSR	3643	MSKCC	GRCh37	19	7170554	7170554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	36	402	0	ENST00000302850.5:c.1477G>A	p.Ala493Thr	p.A493T	ENST00000302850	NM_000208.2	493	Gca/Aca																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602256	10602256	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	139	525	0	ENST00000171111.5:c.1322A>T	p.Glu441Val	p.E441V	ENST00000171111	NM_203500.1	441	gAg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212482	36212482	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	133	681	0	ENST00000222270.7:c.2233C>T	p.Gln745Ter	p.Q745*	ENST00000222270	NM_014727.1	745	Caa/Taa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223199	36223199	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	186	848	0	ENST00000222270.7:c.5749A>C	p.Ser1917Arg	p.S1917R	ENST00000222270	NM_014727.1	1917	Agc/Cgc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702166	47702167	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	83	281	0	ENST00000233146.2:c.1763_1764del	p.Tyr588CysfsTer9	p.Y588Cfs*9	ENST00000233146	NM_000251.2	588	TAt/t																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99163081	99163081	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	71	432	0	ENST00000074304.5:c.1087C>A	p.Pro363Thr	p.P363T	ENST00000074304	NM_001134224.1	363	Cca/Aca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713406	40713406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	140	590	2	ENST00000373198.4:c.4109G>A	p.Arg1370His	p.R1370H	ENST00000373198	NM_133170.3	1370	cGc/cAc																																																																															
MST1	4485	MSKCC	GRCh37	3	49725012	49725012	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145575614		P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	114	522	0	ENST00000449682.2:c.332G>A	p.Arg111His	p.R111H	ENST00000449682	NM_020998.3	111	cGc/cAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467679	66467679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	60	336	0	ENST00000273854.3:c.590C>T	p.Thr197Ile	p.T197I	ENST00000273854	NM_004439.5	197	aCa/aTa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183252	56183252	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	114	455	0	ENST00000399503.3:c.4162G>T	p.Asp1388Tyr	p.D1388Y	ENST00000399503	NM_005921.1	1388	Gat/Tat																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564656	86564656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	141	607	0	ENST00000274376.6:c.388C>T	p.Pro130Ser	p.P130S	ENST00000274376	NM_002890.2	130	Cca/Tca																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94067982	94067982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	38	250	0	ENST00000369303.4:c.980C>T	p.Ala327Val	p.A327V	ENST00000369303	NM_004440.3	327	gCg/gTg																																																																															
XIAP	331	MSKCC	GRCh37	X	123020315	123020315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	124	483	0	ENST00000355640.3:c.803G>A	p.Arg268Gln	p.R268Q	ENST00000355640		268	cGg/cAg																																																																															
ATM	472	MSKCC	GRCh37	11	108196812	108196812	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0040335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	23	253	0	ENST00000278616.4:c.6835A>T	p.Lys2279Ter	p.K2279*	ENST00000278616	NM_000051.3	2279	Aaa/Taa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2124309	2124309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	71	812	0	ENST00000219476.3:c.2464G>A	p.Ala822Thr	p.A822T	ENST00000219476	NM_000548.3	822	Gcg/Acg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576893	7576893	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	441	546	0	ENST00000269305.4:c.953del	p.Pro318GlnfsTer27	p.P318Qfs*27	ENST00000269305	NM_001126112.2	318	cCa/ca																																																																															
XIAP	331	MSKCC	GRCh37	X	123020290	123020290	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	196	450	0	ENST00000355640.3:c.778C>G	p.Pro260Ala	p.P260A	ENST00000355640		260	Cca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0040751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	65	851	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0040751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	53	579	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15935789	15935789	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	48	501	1	ENST00000268712.3:c.7144C>A	p.Gln2382Lys	p.Q2382K	ENST00000268712	NM_006311.3	2382	Cag/Aag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440635	56440635	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0040751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	160	810	2	ENST00000407977.2:c.582+1G>A		p.X194_splice	ENST00000407977		194																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0040982-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			601	46	462	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457303	67457303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040982-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			917	87	706	1	ENST00000327367.4:c.277C>T	p.Arg93Ter	p.R93*	ENST00000327367	NM_005902.3	93	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0040982-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	86	730	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554282	63554283	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCA			P-0040982-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			999	115	700	0	ENST00000307078.5:c.453_456dup	p.Thr153CysfsTer16	p.T153Cfs*16	ENST00000307078	NM_004655.3	152	-/TGCC																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395746	45395746	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040982-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			554	52	451	3	ENST00000262160.6:c.388C>T	p.Arg130Ter	p.R130*	ENST00000262160	NM_005901.5	130	Cga/Tga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502151	157502151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040982-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			833	58	557	0	ENST00000346085.5:c.3184G>A	p.Glu1062Lys	p.E1062K	ENST00000346085	NM_020732.3	1062	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	203	469	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0041071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	793	817	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0041072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	399	882	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	97	228	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3799626	3799626	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0041072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	66	515	0	ENST00000262367.5:c.3836+2T>G		p.X1279_splice	ENST00000262367	NM_004380.2	1279																																																																																
POLE	5426	MSKCC	GRCh37	12	133238115	133238115	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0041209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	27	371	0	ENST00000320574.5:c.2862G>C	p.Lys954Asn	p.K954N	ENST00000320574	NM_006231.2	954	aaG/aaC																																																																															
BLM	641	MSKCC	GRCh37	15	91295085	91295085	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	48	344	0	ENST00000355112.3:c.868G>C	p.Glu290Gln	p.E290Q	ENST00000355112	NM_000057.2	290	Gaa/Caa																																																																															
NF1	4763	MSKCC	GRCh37	17	29667616	29667616	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	99	505	0	ENST00000358273.4:c.7015G>C	p.Glu2339Gln	p.E2339Q	ENST00000358273	NM_001042492.2	2339	Gaa/Caa																																																																															
IDH1	3417	MSKCC	GRCh37	2	209104729	209104730	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TG	TG	-			P-0041209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	46	281	0	ENST00000345146.2:c.851-3_851-2del		p.X284_splice	ENST00000345146	NM_005896.2	284																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41275675	41275675	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	58	450	0	ENST00000349496.5:c.1570C>G	p.His524Asp	p.H524D	ENST00000349496	NM_001904.3	524	Cat/Gat																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437669	52437669	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	94	631	1	ENST00000460680.1:c.1492G>T	p.Glu498Ter	p.E498*	ENST00000460680	NM_004656.3	498	Gag/Tag																																																																															
KDR	3791	MSKCC	GRCh37	4	55960978	55960978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	56	413	0	ENST00000263923.4:c.2962G>A	p.Glu988Lys	p.E988K	ENST00000263923	NM_002253.2	988	Gaa/Aaa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031891	26031891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	44	277	0	ENST00000244661.2:c.398G>A	p.Gly133Glu	p.G133E	ENST00000244661	NM_003537.3	133	gGa/gAa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165223	32165223	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	83	702	0	ENST00000375023.3:c.4905G>C	p.Glu1635Asp	p.E1635D	ENST00000375023	NM_004557.3	1635	gaG/gaC																																																																															
ATRX	546	MSKCC	GRCh37	X	76937950	76937950	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	36	547	0	ENST00000373344.5:c.2798C>A	p.Ser933Tyr	p.S933Y	ENST00000373344	NM_000489.3	933	tCt/tAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0041223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	44	491	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	78	761	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42840410	42840411	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	134	571	0	ENST00000398585.3:c.1337_1338del	p.Arg446MetfsTer8	p.R446Mfs*8	ENST00000398585	NM_001135099.1	446	aGA/a																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500474	99500474	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45475702		P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	44	766	0	ENST00000268035.6:c.3907G>A	p.Val1303Ile	p.V1303I	ENST00000268035	NM_000875.3	1303	Gtc/Atc																																																																															
TP63	8626	MSKCC	GRCh37	3	189582168	189582168	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121908835		P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	51	498	1	ENST00000264731.3:c.727C>T	p.Arg243Trp	p.R243W	ENST00000264731	NM_003722.4	243	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258894	16258894	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	249	937	0	ENST00000375759.3:c.6159C>A	p.Asn2053Lys	p.N2053K	ENST00000375759	NM_015001.2	2053	aaC/aaA																																																																															
MGA	23269	MSKCC	GRCh37	15	42042300	42042301	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	115	642	0	ENST00000219905.7:c.6499_6500del	p.Leu2167GlyfsTer27	p.L2167Gfs*27	ENST00000219905	NM_001164273.1	2165	gaCTct/gact																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372071	55372071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	48	375	2	ENST00000297316.4:c.761C>T	p.Ala254Val	p.A254V	ENST00000297316	NM_022454.3	254	gCg/gTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274018	10274018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	215	905	0	ENST00000330684.3:c.251C>T	p.Thr84Met	p.T84M	ENST00000330684	NM_001134407.1	84	aCg/aTg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918548	44918548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	18	257	0	ENST00000377967.4:c.1031C>T	p.Ala344Val	p.A344V	ENST00000377967	NM_021140.2	344	gCt/gTt																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793049	33793049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	25	272	1	ENST00000498907.2:c.272C>T	p.Ala91Val	p.A91V	ENST00000498907	NM_004364.3	91	gCc/gTc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905525	50905525	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150010804		P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	52	965	0	ENST00000440232.2:c.653G>A	p.Arg218His	p.R218H	ENST00000440232	NM_002691.3	218	cGc/cAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176720965	176720965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	130	535	0	ENST00000439151.2:c.6596G>A	p.Arg2199His	p.R2199H	ENST00000439151	NM_022455.4	2199	cGt/cAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70348536	70348536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	37	292	0	ENST00000374080.3:c.3443G>A	p.Arg1148His	p.R1148H	ENST00000374080		1148	cGc/cAc																																																																															
HGF	3082	MSKCC	GRCh37	7	81374338	81374338	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202185530		P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	64	405	0	ENST00000222390.5:c.724C>T	p.Arg242Trp	p.R242W	ENST00000222390	NM_000601.4	242	Cgg/Tgg																																																																															
MED12	9968	MSKCC	GRCh37	X	70349948	70349948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	77	433	0	ENST00000374080.3:c.3931G>A	p.Val1311Met	p.V1311M	ENST00000374080		1311	Gtg/Atg																																																																															
STK40	83931	MSKCC	GRCh37	1	36809821	36809821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	202	816	0	ENST00000373129.3:c.784G>A	p.Val262Met	p.V262M	ENST00000373129	NM_032017.1	262	Gtg/Atg																																																																															
SUFU	51684	MSKCC	GRCh37	10	104359190	104359190	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	36	462	0	ENST00000369902.3:c.911A>G	p.Asp304Gly	p.D304G	ENST00000369902	NM_016169.3	304	gAc/gGc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572203	64572203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	57	433	0	ENST00000337652.1:c.1451G>A	p.Arg484Gln	p.R484Q	ENST00000337652	NM_130803.2	484	cGg/cAg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870962	12870962	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	33	405	0	ENST00000228872.4:c.192delT	p.Gln65ArgfsTer6	p.Q65Rfs*6	ENST00000228872	NM_004064.3	63	gaT/ga																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112924325	112924325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	199	863	1	ENST00000351677.2:c.1271C>T	p.Pro424Leu	p.P424L	ENST00000351677	NM_002834.3	424	cCg/cTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646376	3646376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	178	883	0	ENST00000294008.3:c.1702G>A	p.Val568Met	p.V568M	ENST00000294008	NM_032444.2	568	Gtg/Atg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274204	10274204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	44	472	0	ENST00000330684.3:c.65C>T	p.Ala22Val	p.A22V	ENST00000330684	NM_001134407.1	22	gCg/gTg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17127391	17127391	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	65	796	0	ENST00000285071.4:c.463A>G	p.Thr155Ala	p.T155A	ENST00000285071	NM_144997.5	155	Acc/Gcc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40353770	40353770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	169	795	0	ENST00000293328.3:c.2350C>T	p.His784Tyr	p.H784Y	ENST00000293328	NM_012448.3	784	Cac/Tac																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78936801	78936801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	226	853	0	ENST00000306801.3:c.3883G>A	p.Gly1295Ser	p.G1295S	ENST00000306801	NM_020761.2	1295	Ggc/Agc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56409219	56409219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	112	527	1	ENST00000348428.3:c.1726C>T	p.Arg576Trp	p.R576W	ENST00000348428	NM_006785.3	576	Cgg/Tgg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47636839	47637373	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGTGTGCGCCTGTATTCCCAGCTACTGGGGAGGCTGAAGCAGGAGAATCGATTGAACCCTTGAGGCAGAGGTTGCAGTGAGTTGAGATCGCACCATTGCACTCTAGCCTGGGTGACAGAGCAAGACTTCATCTCAAAAAAAAGAGAAAACATTTTATTAATAAGGTTCATAGAGTTTGGATTTTTCCTTTTTGCTTATAAAATTTTAAAGTATGTTCAAGAGTTTGTTAAATTTTTAAAATTTTATTTTTACTTAGGCTTCTCCTGGCAATCTCTCTCAGTTTGAAGACATTCTCTTTGGTAACAATGATATGTCAGCTTCCATTGGTGTTGTGGGTGTTAAAATGTCCGCAGTTGATGGCCAGAGACAGGTTGGAGTTGGGTATGTGGATTCCATA	CTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGTGTGCGCCTGTATTCCCAGCTACTGGGGAGGCTGAAGCAGGAGAATCGATTGAACCCTTGAGGCAGAGGTTGCAGTGAGTTGAGATCGCACCATTGCACTCTAGCCTGGGTGACAGAGCAAGACTTCATCTCAAAAAAAAGAGAAAACATTTTATTAATAAGGTTCATAGAGTTTGGATTTTTCCTTTTTGCTTATAAAATTTTAAAGTATGTTCAAGAGTTTGTTAAATTTTTAAAATTTTATTTTTACTTAGGCTTCTCCTGGCAATCTCTCTCAGTTTGAAGACATTCTCTTTGGTAACAATGATATGTCAGCTTCCATTGGTGTTGTGGGTGTTAAAATGTCCGCAGTTGATGGCCAGAGACAGGTTGGAGTTGGGTATGTGGATTCCATA	-			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2	54	0	0	ENST00000233146.2:c.367-393_508del		p.X123_splice	ENST00000233146	NM_000251.2	123																																																																																
JAK2	3717	MSKCC	GRCh37	9	5090503	5090503	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	53	338	0	ENST00000381652.3:c.2819A>G	p.Tyr940Cys	p.Y940C	ENST00000381652	NM_004972.3	940	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0041362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	247	291	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0041362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	312	849	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0041362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	128	298	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670357	134670357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	167	522	0	ENST00000398015.3:c.268C>T	p.Arg90Cys	p.R90C	ENST00000398015	NM_004441.4	90	Cgc/Tgc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	245	427	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174438	112174438	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	84	323	0	ENST00000257430.4:c.3147G>A	p.Trp1049Ter	p.W1049*	ENST00000257430	NM_000038.5	1049	tgG/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112175788	112175788	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	52	287	0	ENST00000257430.4:c.4497delA	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1499	ggA/gg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101438	27101438	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	212	652	0	ENST00000324856.7:c.4724del	p.Pro1575HisfsTer37	p.P1575Hfs*37	ENST00000324856	NM_006015.4	1574	Ccc/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210710	36210710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	132	801	1	ENST00000222270.7:c.461G>A	p.Arg154His	p.R154H	ENST00000222270	NM_014727.1	154	cGc/cAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41527560	41527560	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	205	551	0	ENST00000263253.7:c.1451C>A	p.Pro484His	p.P484H	ENST00000263253	NM_001429.3	484	cCc/cAc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66782948	66782948	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	49	370	0	ENST00000307102.5:c.1177G>C	p.Val393Leu	p.V393L	ENST00000307102	NM_002755.3	393	Gtc/Ctc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579359	7579360	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAAACCGTA			P-0041481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	197	617	0	ENST00000269305.4:c.319_327dup	p.Tyr107_Phe109dup	p.Y107_F109dup	ENST00000269305	NM_001126112.2	107	-/TACGGTTTC																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	132	509	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
AXL	558	MSKCC	GRCh37	19	41736935	41736935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	192	935	1	ENST00000301178.4:c.650G>A	p.Arg217His	p.R217H	ENST00000301178	NM_021913.4	217	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	114	358	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	155	597	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	146	703	5	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	357	953	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	109	356	0	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845830	72845830	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	189	711	2	ENST00000268489.5:c.3637del	p.Thr1213GlnfsTer31	p.T1213Qfs*31	ENST00000268489	NM_006885.3	1213	Aca/ca																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	80	382	4	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	132	348	7	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932085	39932085	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	245	475	1	ENST00000378444.4:c.2514del	p.Lys839SerfsTer17	p.K839Sfs*17	ENST00000378444	NM_001123385.1	838	ccC/cc																																																																															
SYK	6850	MSKCC	GRCh37	9	93606273	93606273	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	182	987	1	ENST00000375746.1:c.98delG	p.Gly33AlafsTer2	p.G33Afs*2	ENST00000375746	NM_001174167.1	31	caG/ca																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612879	228612879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	168	755	0	ENST00000366696.1:c.148C>T	p.Arg50Cys	p.R50C	ENST00000366696	NM_003493.2	50	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	211	1083	3	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447773	49447773	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	137	617	0	ENST00000301067.7:c.661del	p.Ala221LeufsTer40	p.A221Lfs*40	ENST00000301067	NM_003482.3	221	Gct/ct																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288789	15288789	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	52	240	0	ENST00000263388.2:c.3950del	p.Pro1317GlnfsTer103	p.P1317Qfs*103	ENST00000263388	NM_000435.2	1317	cCa/ca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221667	36221667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	196	1048	3	ENST00000222270.7:c.5336G>A	p.Arg1779Gln	p.R1779Q	ENST00000222270	NM_014727.1	1779	cGa/cAa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209583	98209583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	150	847	0	ENST00000331920.6:c.3955C>T	p.Arg1319Cys	p.R1319C	ENST00000331920	NM_000264.3	1319	Cgc/Tgc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	163	1086	0	ENST00000220592.5:c.1805_1806dup	p.Ala603ProfsTer93	p.A603Pfs*93	ENST00000220592	NM_012154.3	602	-/CC																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212439	5212439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150241840		P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	148	1008	0	ENST00000357368.4:c.4678G>A	p.Val1560Met	p.V1560M	ENST00000357368	NM_002850.3	1560	Gtg/Atg																																																																															
SRC	6714	MSKCC	GRCh37	20	36030841	36030841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	109	481	0	ENST00000358208.4:c.1120G>A	p.Ala374Thr	p.A374T	ENST00000358208		374	Gcc/Acc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625302	69625302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	195	1119	4	ENST00000334134.2:c.491G>A	p.Arg164His	p.R164H	ENST00000334134	NM_005247.2	164	cGc/cAc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65344759	65344759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	116	470	0	ENST00000342505.4:c.278G>A	p.Arg93His	p.R93H	ENST00000342505	NM_002227.2	93	cGc/cAc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77070026	77070026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	170	556	2	ENST00000356341.3:c.514C>T	p.Pro172Ser	p.P172S	ENST00000356341	NM_002576.4	172	Cca/Tca																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856274	111856274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	21	50	0	ENST00000341259.2:c.325G>A	p.Gly109Ser	p.G109S	ENST00000341259	NM_005475.2	109	Ggc/Agc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877417	28877417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	190	644	0	ENST00000282397.4:c.3904G>A	p.Glu1302Lys	p.E1302K	ENST00000282397	NM_002019.4	1302	Gaa/Aaa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2133730	2133731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGGTTCCTGTGCTGGT			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	127	998	0	ENST00000219476.3:c.3920_3936dup	p.Glu1313ArgfsTer18	p.E1313Rfs*18	ENST00000219476	NM_000548.3	1306	-/GAGGTTCCTGTGCTGGT																																																																															
INSR	3643	MSKCC	GRCh37	19	7117218	7117218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	190	887	0	ENST00000302850.5:c.3998C>T	p.Ser1333Leu	p.S1333L	ENST00000302850	NM_000208.2	1333	tCg/tTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281350	15281350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	175	1038	0	ENST00000263388.2:c.4906C>T	p.Pro1636Ser	p.P1636S	ENST00000263388	NM_000435.2	1636	Cct/Tct																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955212	17955212	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	185	989	0	ENST00000458235.1:c.15T>G	p.Ser5Arg	p.S5R	ENST00000458235	NM_000215.3	5	agT/agG																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44515842	44515842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	138	610	0	ENST00000291552.4:c.211G>A	p.Asp71Asn	p.D71N	ENST00000291552	NM_006758.2	71	Gat/Aat																																																																															
BCL6	604	MSKCC	GRCh37	3	187447627	187447627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	194	951	1	ENST00000232014.4:c.566C>T	p.Ser189Phe	p.S189F	ENST00000232014	NM_001130845.1	189	tCc/tTc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680046	30680046	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	148	698	0	ENST00000376406.3:c.1673delG	p.Gly558AspfsTer10	p.G558Dfs*10	ENST00000376406	NM_014641.2	558	gGa/ga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265487	152265487	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	179	712	0	ENST00000206249.3:c.940C>G	p.Gln314Glu	p.Q314E	ENST00000206249	NM_000125.3	314	Cag/Gag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391798	139391799	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	190	974	0	ENST00000277541.6:c.6392dup	p.Thr2132HisfsTer136	p.T2132Hfs*136	ENST00000277541	NM_017617.3	2131	ggc/ggGc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223646	53223646	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	256	540	0	ENST00000375401.3:c.3713G>A	p.Trp1238Ter	p.W1238*	ENST00000375401	NM_004187.3	1238	tGg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	12	326	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0041574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	21	473	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0041606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	55	487	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576917	7576918	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	G			P-0041606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	91	715	0	ENST00000269305.4:c.928_929delinsC	p.Asn310ProfsTer35	p.N310Pfs*35	ENST00000269305	NM_001126112.2	310	AAc/Cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	211	824	0	ENST00000269305.4:c.532C>G	p.His178Asp	p.H178D	ENST00000269305	NM_001126112.2	178	Cac/Gac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0041716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	20	410	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874459	151874461	+	stop_gained	Nonsense_Mutation	ONP	GTC	GTC	TTA			P-0041716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	15	466	0	ENST00000262189.6:c.8077_8079delinsTAA	p.Asp2693Ter	p.D2693*	ENST00000262189	NM_170606.2	2693	GAC/TAA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	24	474	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0041731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	9	297	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0041731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	49	533	2	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920449	114920449	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0041731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	41	523	0	ENST00000543371.1:c.1390A>G	p.Arg464Gly	p.R464G	ENST00000543371	NM_001198531.1	464	Agg/Ggg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729962	30729962	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs104893819		P-0041731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	68	480	1	ENST00000359013.4:c.1558C>T	p.Arg520Ter	p.R520*	ENST00000359013	NM_001024847.2	520	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489571	56489571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	32	547	0	ENST00000267101.3:c.2036G>A	p.Arg679Gln	p.R679Q	ENST00000267101	NM_001982.3	679	cGa/cAa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780921	9780921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1228	118	782	1	ENST00000377346.4:c.1643G>A	p.Arg548Gln	p.R548Q	ENST00000377346	NM_005026.3	548	cGg/cAg																																																																															
ATR	545	MSKCC	GRCh37	3	142188271	142188271	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202193482		P-0041731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	20	314	0	ENST00000350721.4:c.6460G>A	p.Asp2154Asn	p.D2154N	ENST00000350721	NM_001184.3	2154	Gat/Aat																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518013	176518013	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139464025		P-0041731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1266	178	680	0	ENST00000292408.4:c.511C>T	p.Arg171Cys	p.R171C	ENST00000292408	NM_213647.1	171	Cgc/Tgc																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031926	26031926	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	34	355	0	ENST00000244661.2:c.363G>C	p.Met121Ile	p.M121I	ENST00000244661	NM_003537.3	121	atG/atC																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32191690	32191691	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAA			P-0041731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	85	722	1	ENST00000375023.3:c.15_16insTTG	p.Leu16dup	p.L16dup	ENST00000375023	NM_004557.3	16	-/TTG																																																																															
CDK12	51755	MSKCC	GRCh37	17	37646914	37646914	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	101	663	0	ENST00000447079.4:c.2036A>G	p.Asp679Gly	p.D679G	ENST00000447079	NM_015083.1	679	gAt/gGt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	80	399	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519947		P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	28	623	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	109	663	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779211	3779211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783507		P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	51	429	2	ENST00000262367.5:c.5837del	p.Pro1946HisfsTer30	p.P1946Hfs*30	ENST00000262367	NM_004380.2	1946	cCa/ca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913389		P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	78	261	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	56	320	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28578215	28578216	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	70	415	0	ENST00000241453.7:c.2955_2956delTC	p.Pro986AlafsTer27	p.P986Afs*27	ENST00000241453	NM_004119.2	985	tcTCcg/tccg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	40	189	1	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101300	27101300	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	41	625	0	ENST00000324856.7:c.4582C>T	p.Arg1528Ter	p.R1528*	ENST00000324856	NM_006015.4	1528	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851558	134851558	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs770155473		P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	34	337	0	ENST00000398015.3:c.964G>A	p.Val322Ile	p.V322I	ENST00000398015	NM_004441.4	322	Gtc/Atc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244454	46244454	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	20	419	0	ENST00000334344.6:c.2552del	p.Pro851HisfsTer4	p.P851Hfs*4	ENST00000334344	NM_152641.2	850	Ccc/cc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	121	682	0	ENST00000407977.2:c.349delC	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	84	640	5	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	40	250	1	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	122	683	4	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351359	89351359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	144	805	1	ENST00000301030.4:c.1591G>A	p.Ala531Thr	p.A531T	ENST00000301030	NM_001256183.1	531	Gcc/Acc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52724244	52724244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	103	386	0	ENST00000322088.6:c.1376G>A	p.Arg459His	p.R459H	ENST00000322088	NM_014225.5	459	cGc/cAc																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	88	433	5	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	360055	360055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	75	598	0	ENST00000262320.3:c.1034delC	p.Pro345HisfsTer69	p.P345Hfs*69	ENST00000262320	NM_003502.3	345	cCa/ca																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562748	21562748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	45	180	0	ENST00000382592.4:c.1171C>T	p.Arg391Cys	p.R391C	ENST00000382592	NM_014572.2	391	Cgc/Tgc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39914741	39914741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	74	394	1	ENST00000378444.4:c.4621G>A	p.Asp1541Asn	p.D1541N	ENST00000378444	NM_001123385.1	1541	Gat/Aat																																																																															
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	75	323	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																															
BLM	641	MSKCC	GRCh37	15	91310207	91310208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	53	231	0	ENST00000355112.3:c.2268dup	p.Asp757ArgfsTer18	p.D757Rfs*18	ENST00000355112	NM_000057.2	754	tca/tcAa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52702581	52702581	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	82	309	0	ENST00000394830.3:c.317A>G	p.Tyr106Cys	p.Y106C	ENST00000394830	NM_018313.4	106	tAt/tGt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910368	29910368	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	91	595	0	ENST00000376809.5:c.38T>G	p.Leu13Arg	p.L13R	ENST00000376809	NM_002116.7	13	cTc/cGc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	84	455	1	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
TEK	7010	MSKCC	GRCh37	9	27185545	27185545	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	133	574	1	ENST00000380036.4:c.1250delC	p.Pro417LeufsTer10	p.P417Lfs*10	ENST00000380036	NM_000459.3	415	ctC/ct																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620657	52620657	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	87	350	0	ENST00000394830.3:c.3096del	p.Phe1032LeufsTer102	p.F1032Lfs*102	ENST00000394830	NM_018313.4	1032	ttT/tt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023982	31023983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	24	522	0	ENST00000375687.4:c.3473dup	p.Asn1158LysfsTer6	p.N1158Kfs*6	ENST00000375687	NM_015338.5	1156	gga/ggAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874149	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	50	404	1	ENST00000262189.6:c.8389_8390del	p.Lys2797GlyfsTer11	p.K2797Gfs*11	ENST00000262189	NM_170606.2	2797	AAg/g																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528375	157528375	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	113	662	0	ENST00000346085.5:c.6100C>T	p.Gln2034Ter	p.Q2034*	ENST00000346085	NM_020732.3	2034	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993509	72993509	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	89	658	0	ENST00000268489.5:c.536delG	p.Gly179AlafsTer22	p.G179Afs*22	ENST00000268489	NM_006885.3	179	gGc/gc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727403	66727441	+	inframe_deletion	In_Frame_Del	DEL	TAGAGCTTGATGAGCAGCAGCGAAAGCGCCTTGAGGCCT	TAGAGCTTGATGAGCAGCAGCGAAAGCGCCTTGAGGCCT	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	71	382	0	ENST00000307102.5:c.120_158delAGAGCTTGATGAGCAGCAGCGAAAGCGCCTTGAGGCCTT	p.Glu41_Phe53del	p.E41_F53del	ENST00000307102	NM_002755.3	40	cTAGAGCTTGATGAGCAGCAGCGAAAGCGCCTTGAGGCCTtt/ctt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022593	31022593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	81	551	0	ENST00000375687.4:c.2078G>A	p.Arg693Gln	p.R693Q	ENST00000375687	NM_015338.5	693	cGa/cAa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323315	31323315	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	24	373	0	ENST00000412585.2:c.674T>C	p.Leu225Pro	p.L225P	ENST00000412585	NM_005514.6	225	cTg/cCg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495375	56495377	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	70	544	0	ENST00000267101.3:c.3573_3575del	p.Glu1191del	p.E1191del	ENST00000267101	NM_001982.3	1189	GAA/-																																																																															
AR	367	MSKCC	GRCh37	X	66765127	66765127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	31	502	0	ENST00000374690.3:c.139G>A	p.Ala47Thr	p.A47T	ENST00000374690	NM_000044.3	47	Gca/Aca																																																																															
ERG	2078	MSKCC	GRCh37	21	39817415	39817415	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148089492		P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	72	478	1	ENST00000288319.7:c.148C>T	p.Arg50Cys	p.R50C	ENST00000288319	NM_182918.3	50	Cgc/Tgc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117704481	117704481	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	46	235	1	ENST00000368508.3:c.2495del	p.Lys832ArgfsTer2	p.K832Rfs*2	ENST00000368508	NM_002944.2	832	aAg/ag																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969982	161969983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	47	620	0	ENST00000366898.1:c.986dup	p.Val330ArgfsTer17	p.V330Rfs*17	ENST00000366898	NM_004562.2	329	ggc/ggGc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47079250	47079250	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	24	406	0	ENST00000409792.3:c.7256C>A	p.Pro2419His	p.P2419H	ENST00000409792	NM_014159.6	2419	cCt/cAt																																																																															
IRF4	3662	MSKCC	GRCh37	6	393304	393304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	21	429	1	ENST00000380956.4:c.152G>A	p.Arg51His	p.R51H	ENST00000380956	NM_001195286.1	51	cGc/cAc																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363406	40363406	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	39	600	1	ENST00000397332.2:c.823del	p.Glu275LysfsTer11	p.E275Kfs*11	ENST00000397332	NM_001033082.2	275	Gaa/aa																																																																															
JUN	3725	MSKCC	GRCh37	1	59247872	59247872	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	176	785	0	ENST00000371222.2:c.871A>T	p.Asn291Tyr	p.N291Y	ENST00000371222	NM_002228.3	291	Aac/Tac																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120459193	120459193	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs192122939		P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	74	493	0	ENST00000256646.2:c.6152G>A	p.Arg2051Gln	p.R2051Q	ENST00000256646	NM_024408.3	2051	cGg/cAg																																																																															
PARP1	142	MSKCC	GRCh37	1	226564883	226564883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	88	416	0	ENST00000366794.5:c.1867G>A	p.Gly623Arg	p.G623R	ENST00000366794	NM_001618.3	623	Ggg/Agg																																																																															
TET1	80312	MSKCC	GRCh37	10	70333282	70333282	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	89	583	0	ENST00000373644.4:c.1187C>A	p.Pro396Gln	p.P396Q	ENST00000373644	NM_030625.2	396	cCa/cAa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720658	89720659	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	57	220	0	ENST00000371953.3:c.810_811del	p.Met270IlefsTer27	p.M270Ifs*27	ENST00000371953	NM_000314.4	270	aTG/a																																																																															
TBX3	6926	MSKCC	GRCh37	12	115111969	115111969	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	31	618	1	ENST00000257566.3:c.1770+1G>T		p.X590_splice	ENST00000257566	NM_016569.3	590																																																																																
MSI1	4440	MSKCC	GRCh37	12	120796850	120796850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	103	715	0	ENST00000257552.2:c.409G>A	p.Asp137Asn	p.D137N	ENST00000257552	NM_002442.3	137	Gac/Aac																																																																															
POLE	5426	MSKCC	GRCh37	12	133250170	133250170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	30	470	0	ENST00000320574.5:c.1350G>T	p.Glu450Asp	p.E450D	ENST00000320574	NM_006231.2	450	gaG/gaT																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988459	36988459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	21	377	0	ENST00000354822.5:c.194G>T	p.Gly65Val	p.G65V	ENST00000354822	NM_001079668.2	65	gGg/gTg																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68292200	68292200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	64	288	0	ENST00000487270.1:c.104C>T	p.Pro35Leu	p.P35L	ENST00000487270	NM_133509.3	35	cCa/cTa																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68878183	68878183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	56	332	0	ENST00000487270.1:c.896C>T	p.Thr299Ile	p.T299I	ENST00000487270	NM_133509.3	299	aCc/aTc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712798	43712799	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	115	709	0	ENST00000382044.4:c.4385dup	p.Leu1462PhefsTer4	p.L1462Ffs*4	ENST00000382044	NM_001141980.1	1462	ttg/ttTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11172464	11172464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	43	633	0	ENST00000344626.4:c.4916G>A	p.Arg1639His	p.R1639H	ENST00000344626	NM_003072.3	1639	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229429	36229429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	77	463	3	ENST00000222270.7:c.8119G>A	p.Ala2707Thr	p.A2707T	ENST00000222270	NM_014727.1	2707	Gcc/Acc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753231	42753231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	118	787	0	ENST00000222329.4:c.1033C>A	p.Pro345Thr	p.P345T	ENST00000222329	NM_006494.2	345	Cct/Act																																																																															
CIC	23152	MSKCC	GRCh37	19	42799172	42799172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	86	732	0	ENST00000575354.2:c.4656C>A	p.Ser1552Arg	p.S1552R	ENST00000575354	NM_015125.3	1552	agC/agA																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919765	50919765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	87	639	0	ENST00000440232.2:c.2933G>A	p.Arg978His	p.R978H	ENST00000440232	NM_002691.3	978	cGt/cAt																																																																															
ALK	238	MSKCC	GRCh37	2	30143237	30143237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	97	341	0	ENST00000389048.3:c.289C>T	p.Pro97Ser	p.P97S	ENST00000389048	NM_004304.4	97	Ccg/Tcg																																																																															
BARD1	580	MSKCC	GRCh37	2	215633979	215633979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	83	290	0	ENST00000260947.4:c.1372G>T	p.Asp458Tyr	p.D458Y	ENST00000260947	NM_000465.2	458	Gac/Tac																																																																															
TOP1	7150	MSKCC	GRCh37	20	39729866	39729868	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	75	354	1	ENST00000361337.2:c.1188_1190del	p.Pro397del	p.P397del	ENST00000361337	NM_003286.2	394	tCTCct/tct																																																																															
ERG	2078	MSKCC	GRCh37	21	39774491	39774491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	28	416	0	ENST00000288319.7:c.661G>A	p.Ala221Thr	p.A221T	ENST00000288319	NM_182918.3	221	Gct/Act																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884873	134884873	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	82	480	0	ENST00000398015.3:c.1649T>C	p.Val550Ala	p.V550A	ENST00000398015	NM_004441.4	550	gTc/gCc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1955237	1955237	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	90	392	1	ENST00000382891.5:c.2324C>A	p.Pro775Gln	p.P775Q	ENST00000382891	NM_133335.3	775	cCa/cAa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143067034	143067034	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	56	348	0	ENST00000262992.4:c.1679A>G	p.Lys560Arg	p.K560R	ENST00000262992	NM_001101669.1	560	aAg/aGg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592088	67592088	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	52	247	0	ENST00000274335.5:c.1907del	p.Asn636ThrfsTer26	p.N636Tfs*26	ENST00000274335		635	gAa/ga																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673754	30673754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	94	531	0	ENST00000376406.3:c.3206C>T	p.Pro1069Leu	p.P1069L	ENST00000376406	NM_014641.2	1069	cCc/cTc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199888	138199888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	50	400	0	ENST00000237289.4:c.1306G>A	p.Gly436Arg	p.G436R	ENST00000237289	NM_001270507.1	436	Ggg/Agg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945052	151945052	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	28	407	0	ENST00000262189.6:c.2467A>G	p.Ile823Val	p.I823V	ENST00000262189	NM_170606.2	823	Att/Gtt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21994138	21994138	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	89	490	0	ENST00000361570.3:c.316G>T	p.Gly106Cys	p.G106C	ENST00000361570	NM_058195.3	106	Ggt/Tgt																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006027	22006027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	128	554	0	ENST00000276925.6:c.376C>T	p.Arg126Cys	p.R126C	ENST00000276925	NM_004936.3	126	Cgc/Tgc																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006137	22006137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	100	417	1	ENST00000276925.6:c.266G>A	p.Arg89Gln	p.R89Q	ENST00000276925	NM_004936.3	89	cGg/cAg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101904842	101904842	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	39	247	0	ENST00000374994.4:c.830G>A	p.Trp277Ter	p.W277*	ENST00000374994	NM_004612.2	277	tGg/tAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0042124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	277	527	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0042124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	110	702	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120823	115120838	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCAGGGCGCCCGGC	GGCCAGGGCGCCCGGC	-			P-0042124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	189	594	0	ENST00000257566.3:c.168_183delGCCGGGCGCCCTGGCC	p.Pro57SerfsTer26	p.P57Sfs*26	ENST00000257566	NM_016569.3	56	ctGCCGGGCGCCCTGGCC/ct																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	25	422	1	ENST00000334344.6:c.940C>A	p.Arg314Ser	p.R314S	ENST00000334344	NM_152641.2	314	Cgt/Agt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89712017	89712017	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0042153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	253	273	0	ENST00000371953.3:c.634+1G>A		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																																
BMPR1A	657	MSKCC	GRCh37	10	88683138	88683138	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	541	542	0	ENST00000372037.3:c.1348G>T	p.Val450Leu	p.V450L	ENST00000372037	NM_004329.2	450	Gtg/Ttg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207024	1207024	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1092	90	712	0	ENST00000326873.7:c.112C>G	p.Pro38Ala	p.P38A	ENST00000326873	NM_000455.4	38	Ccg/Gcg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243708812	243708812	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0042224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	25	327	0	ENST00000263826.5:c.1251G>C	p.Lys417Asn	p.K417N	ENST00000263826	NM_005465.4	417	aaG/aaC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604643	48604643	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	24	276	1	ENST00000342988.3:c.1466del	p.Gly489GlufsTer15	p.G489Efs*15	ENST00000342988	NM_005359.5	489	Gga/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0042225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	96	743	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	66	420	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	68	236	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244392	5244392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	112	817	0	ENST00000357368.4:c.1090G>A	p.Val364Ile	p.V364I	ENST00000357368	NM_002850.3	364	Gtc/Atc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518366	8518366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	48	307	0	ENST00000356435.5:c.1025C>T	p.Thr342Met	p.T342M	ENST00000356435		342	aCg/aTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945503	17945503	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	87	748	3	ENST00000458235.1:c.2227C>T	p.Gln743Ter	p.Q743*	ENST00000458235	NM_000215.3	743	Cag/Tag																																																																															
MST1	4485	MSKCC	GRCh37	3	49723354	49723354	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	49	465	0	ENST00000449682.2:c.1189A>T	p.Ser397Cys	p.S397C	ENST00000449682	NM_020998.3	397	Agc/Tgc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268210	153268211	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0042225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	30	264	0	ENST00000281708.4:c.596_597dup	p.Val200LeufsTer40	p.V200Lfs*40	ENST00000281708	NM_033632.3	199	-/TT																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119813	70119822	+	protein_altering_variant	In_Frame_Del	DEL	ACGTGGACAT	ACGTGGACAT	G			P-0042225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	97	860	0	ENST00000245479.2:c.815_824delinsG	p.Asp272_Ile275delinsGly	p.D272_I275delinsG	ENST00000245479	NM_000346.3	272	gACGTGGACATc/gGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	71	368	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0042518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	28	262	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	69	388	1	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	54	278	0	ENST00000257430.4:c.4063del	p.Ser1355LeufsTer60	p.S1355Lfs*60	ENST00000257430	NM_000038.5	1354	Ttt/tt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578490	7578490	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	226	1041	0	ENST00000269305.4:c.440T>A	p.Val147Asp	p.V147D	ENST00000269305	NM_001126112.2	147	gTt/gAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535355	66535355	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	63	627	0	ENST00000273854.3:c.106C>T	p.Arg36Ter	p.R36*	ENST00000273854	NM_004439.5	36	Cga/Tga																																																																															
UPF1	5976	MSKCC	GRCh37	19	18958556	18958556	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	61	586	0	ENST00000262803.5:c.375C>A	p.Tyr125Ter	p.Y125*	ENST00000262803	NM_002911.3	125	taC/taA																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149452958	149452958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	717	606	1	ENST00000286301.3:c.988G>A	p.Gly330Ser	p.G330S	ENST00000286301	NM_005211.3	330	Ggc/Agc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69002816	69002816	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0042518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	21	243	0	ENST00000288368.4:c.2116A>C	p.Thr706Pro	p.T706P	ENST00000288368	NM_024870.2	706	Act/Cct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259514	55259515	+	missense_variant	Missense_Mutation	DNP	CT	CT	AG			P-0042521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	154	576	1	ENST00000275493.2:c.2572_2573inv	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	CTg/AGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039614	47039615	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0042521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	100	635	0	ENST00000329236.7:c.832_833delinsTT	p.Ala278Leu	p.A278L	ENST00000329236	NM_001204466.1	278	GCa/TTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	256	577	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874547	155874547	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	73	759	3	ENST00000368323.3:c.212T>A	p.Leu71Gln	p.L71Q	ENST00000368323	NM_006912.5	71	cTg/cAg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15365029	15365029	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	101	895	0	ENST00000263377.2:c.2092T>G	p.Phe698Val	p.F698V	ENST00000263377	NM_058243.2	698	Ttc/Gtc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702341	47702341	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	40	551	0	ENST00000233146.2:c.1937A>T	p.Asp646Val	p.D646V	ENST00000233146	NM_000251.2	646	gAt/gTt																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119624701	119624701	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0042709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	42	423	0	ENST00000316626.5:c.716-2A>T		p.X239_splice	ENST00000316626		239																																																																																
KIT	3815	MSKCC	GRCh37	4	55564461	55564466	+	inframe_deletion	In_Frame_Del	DEL	CTTTTC	CTTTTC	-			P-0042709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	58	548	0	ENST00000288135.5:c.352_357del	p.Phe118_Leu119del	p.F118_L119del	ENST00000288135	NM_000222.2	117	CTTTTC/-																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047932	180047932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1504	82	1167	0	ENST00000261937.6:c.2243G>A	p.Cys748Tyr	p.C748Y	ENST00000261937	NM_182925.4	748	tGc/tAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	304	735	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120510132	120510132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	212	571	0	ENST00000256646.2:c.1377G>T	p.Glu459Asp	p.E459D	ENST00000256646	NM_024408.3	459	gaG/gaT																																																																															
SDHC	6391	MSKCC	GRCh37	1	161326630	161326630	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0042813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	95	996	0	ENST00000367975.2:c.405G>C	p.Leu135Phe	p.L135F	ENST00000367975	NM_003001.3	135	ttG/ttC																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89371634	89371635	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	124	835	0	ENST00000301030.4:c.205dup	p.Glu69GlyfsTer13	p.E69Gfs*13	ENST00000301030	NM_001256183.1	69	gag/gGag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47699308	47699320	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CATTTCAGTTTAT	CATTTCAGTTTAT	-			P-0042813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	105	447	0	ENST00000347630.2:c.188_200del	p.Asp63GlyfsTer5	p.D63Gfs*5	ENST00000347630	NM_001007230.1	63	gATAAACTGAAATGg/gg																																																																															
STK19	8859	MSKCC	GRCh37	6	31940099	31940099	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	300	1010	1	ENST00000375331.2:c.241G>T	p.Val81Leu	p.V81L	ENST00000375331	NM_004197.1	81	Gta/Tta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0042999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	94	406	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717695	89717696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	154	426	0	ENST00000371953.3:c.723dupT	p.Glu242Ter	p.E242*	ENST00000371953	NM_000314.4	240	-/T																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2636750	2636750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	30	599	0	ENST00000342085.4:c.1199C>T	p.Ser400Phe	p.S400F	ENST00000342085	NM_002613.4	400	tCc/tTc																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348815	11348815	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	42	157	0	ENST00000332029.2:c.521T>A	p.Leu174Gln	p.L174Q	ENST00000332029	NM_003745.1	174	cTg/cAg																																																																															
NF1	4763	MSKCC	GRCh37	17	29554308	29554308	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0042999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	174	625	0	ENST00000358273.4:c.2324A>T	p.Glu775Val	p.E775V	ENST00000358273	NM_001042492.2	775	gAg/gTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15374322	15374322	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	133	551	0	ENST00000263377.2:c.1250A>G	p.Glu417Gly	p.E417G	ENST00000263377	NM_058243.2	417	gAg/gGg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0043003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	49	512	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	73	646	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	40	493	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ATM	472	MSKCC	GRCh37	11	108115727	108115727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	23	353	0	ENST00000278616.4:c.875C>T	p.Pro292Leu	p.P292L	ENST00000278616	NM_000051.3	292	cCg/cTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202851	16202851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	135	625	1	ENST00000375759.3:c.559C>T	p.Arg187Trp	p.R187W	ENST00000375759	NM_015001.2	187	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107136	27107137	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	110	552	0	ENST00000324856.7:c.6749_6750del	p.Glu2250ValfsTer27	p.E2250Vfs*27	ENST00000324856	NM_006015.4	2249	tcAGag/tcag																																																																															
STK40	83931	MSKCC	GRCh37	1	36807519	36807519	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	181	780	0	ENST00000373129.3:c.1145A>T	p.Gln382Leu	p.Q382L	ENST00000373129	NM_032017.1	382	cAg/cTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65301104	65301104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	71	294	0	ENST00000342505.4:c.3344C>T	p.Pro1115Leu	p.P1115L	ENST00000342505	NM_002227.2	1115	cCg/cTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65304164	65304164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	91	247	0	ENST00000342505.4:c.2951C>T	p.Ala984Val	p.A984V	ENST00000342505	NM_002227.2	984	gCc/gTc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874197	155874197	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375724784		P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	188	653	0	ENST00000368323.3:c.334C>T	p.Arg112Cys	p.R112C	ENST00000368323	NM_006912.5	112	Cgt/Tgt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206646635	206646635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	206	1005	1	ENST00000367120.3:c.65G>A	p.Ser22Asn	p.S22N	ENST00000367120	NM_014002.3	22	aGt/aAt																																																																															
FH	2271	MSKCC	GRCh37	1	241669326	241669326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	105	426	0	ENST00000366560.3:c.881C>T	p.Ala294Val	p.A294V	ENST00000366560	NM_000143.3	294	gCt/gTt																																																																															
SUFU	51684	MSKCC	GRCh37	10	104375030	104375030	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs79299301		P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	136	557	0	ENST00000369902.3:c.1028G>A	p.Arg343His	p.R343H	ENST00000369902	NM_016169.3	343	cGc/cAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920393	114920393	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	108	489	0	ENST00000543371.1:c.1334A>C	p.Lys445Thr	p.K445T	ENST00000543371	NM_001198531.1	445	aAg/aCg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925334	114925334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	106	575	0	ENST00000543371.1:c.1412G>A	p.Arg471His	p.R471H	ENST00000543371	NM_001198531.1	471	cGc/cAc																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14380410	14380410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	26	185	0	ENST00000256196.4:c.7G>A	p.Ala3Thr	p.A3T	ENST00000256196		3	Gcg/Acg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572198	64572198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	149	557	1	ENST00000337652.1:c.1456C>T	p.Arg486Trp	p.R486W	ENST00000337652	NM_130803.2	486	Cgg/Tgg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94203741	94203741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	72	163	0	ENST00000323929.3:c.913C>T	p.Arg305Trp	p.R305W	ENST00000323929	NM_005591.3	305	Cgg/Tgg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376700	118376700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	113	552	1	ENST00000534358.1:c.10093G>A	p.Val3365Ile	p.V3365I	ENST00000534358	NM_005933.3	3365	Gtc/Atc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	404740	404740	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	76	383	0	ENST00000399788.2:c.4454A>G	p.Glu1485Gly	p.E1485G	ENST00000399788	NM_001042603.1	1485	gAg/gGg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	420116	420116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	125	575	0	ENST00000399788.2:c.3151C>T	p.Arg1051Trp	p.R1051W	ENST00000399788	NM_001042603.1	1051	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420852	49420852	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	108	629	0	ENST00000301067.7:c.14897G>T	p.Arg4966Leu	p.R4966L	ENST00000301067	NM_003482.3	4966	cGg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421893	49421893	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	155	751	0	ENST00000301067.7:c.14414A>C	p.Glu4805Ala	p.E4805A	ENST00000301067	NM_003482.3	4805	gAg/gCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433122	49433122	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	168	853	2	ENST00000301067.7:c.8249G>T	p.Gly2750Val	p.G2750V	ENST00000301067	NM_003482.3	2750	gGg/gTg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	194	924	1	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
POLE	5426	MSKCC	GRCh37	12	133202740	133202740	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs5745068		P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	148	661	0	ENST00000320574.5:c.6494G>A	p.Arg2165His	p.R2165H	ENST00000320574	NM_006231.2	2165	cGc/cAc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560382	95560382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	142	609	0	ENST00000343455.3:c.5207G>A	p.Arg1736Gln	p.R1736Q	ENST00000343455	NM_177438.2	1736	cGg/cAg																																																																															
MGA	23269	MSKCC	GRCh37	15	42003191	42003191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	152	540	0	ENST00000219905.7:c.2728C>T	p.Arg910Ter	p.R910*	ENST00000219905	NM_001164273.1	910	Cga/Tga																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749302	43749302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	146	405	1	ENST00000382044.4:c.1504C>T	p.Pro502Ser	p.P502S	ENST00000382044	NM_001141980.1	502	Cca/Tca																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134359	2134359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	204	1007	0	ENST00000219476.3:c.4136C>T	p.Ser1379Leu	p.S1379L	ENST00000219476	NM_000548.3	1379	tCg/tTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916133	9916133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	86	508	0	ENST00000330684.3:c.2156G>A	p.Ser719Asn	p.S719N	ENST00000330684	NM_001134407.1	719	aGc/aAc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868112	56868112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	54	607	0	ENST00000308159.5:c.1610G>A	p.Arg537Gln	p.R537Q	ENST00000308159	NM_014669.4	537	cGg/cAg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67660602	67660602	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	179	629	0	ENST00000264010.4:c.1502A>G	p.Asp501Gly	p.D501G	ENST00000264010	NM_006565.3	501	gAt/gGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832404	72832404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	91	519	0	ENST00000268489.5:c.4177G>T	p.Val1393Leu	p.V1393L	ENST00000268489	NM_006885.3	1393	Gtg/Ttg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993863	72993863	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	66	592	0	ENST00000268489.5:c.182T>C	p.Leu61Pro	p.L61P	ENST00000268489	NM_006885.3	61	cTc/cCc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348221	89348221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	178	906	1	ENST00000301030.4:c.4729G>A	p.Asp1577Asn	p.D1577N	ENST00000301030	NM_001256183.1	1577	Gac/Aac																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348413	89348413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	158	942	1	ENST00000301030.4:c.4537G>A	p.Val1513Met	p.V1513M	ENST00000301030	NM_001256183.1	1513	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	104	857	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																															
FLCN	201163	MSKCC	GRCh37	17	17118616	17118616	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112980409		P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	170	511	0	ENST00000285071.4:c.1315G>A	p.Val439Met	p.V439M	ENST00000285071	NM_144997.5	439	Gtg/Atg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40368115	40368115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	161	626	0	ENST00000293328.3:c.1390C>A	p.Leu464Met	p.L464M	ENST00000293328	NM_012448.3	464	Ctg/Atg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119791	70119791	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	177	797	0	ENST00000245479.2:c.793C>T	p.Gln265Ter	p.Q265*	ENST00000245479	NM_000346.3	265	Cag/Tag																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78936850	78936850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	97	430	0	ENST00000306801.3:c.3932C>T	p.Pro1311Leu	p.P1311L	ENST00000306801	NM_020761.2	1311	cCg/cTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7119479	7119479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	84	663	0	ENST00000302850.5:c.3775G>A	p.Asp1259Asn	p.D1259N	ENST00000302850	NM_000208.2	1259	Gac/Aac																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10247805	10247805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	241	938	0	ENST00000340748.4:c.4397G>A	p.Arg1466His	p.R1466H	ENST00000340748		1466	cGc/cAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600005	10600005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	99	886	0	ENST00000171111.5:c.1571G>A	p.Gly524Asp	p.G524D	ENST00000171111	NM_203500.1	524	gGc/gAc																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627496	14627496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	174	610	1	ENST00000254322.2:c.574C>T	p.Pro192Ser	p.P192S	ENST00000254322	NM_006145.1	192	Ccc/Tcc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276311	15276311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	170	803	0	ENST00000263388.2:c.5683C>T	p.Arg1895Cys	p.R1895C	ENST00000263388	NM_000435.2	1895	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212576	36212576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	248	1066	0	ENST00000222270.7:c.2327G>A	p.Arg776Gln	p.R776Q	ENST00000222270	NM_014727.1	776	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228789	36228789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	194	890	0	ENST00000222270.7:c.7688C>T	p.Ala2563Val	p.A2563V	ENST00000222270	NM_014727.1	2563	gCc/gTc																																																																															
CIC	23152	MSKCC	GRCh37	19	42792080	42792080	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141544536		P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	142	718	0	ENST00000575354.2:c.884C>T	p.Thr295Met	p.T295M	ENST00000575354	NM_015125.3	295	aCg/aTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42796340	42796340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	91	1029	0	ENST00000575354.2:c.2989C>A	p.Leu997Met	p.L997M	ENST00000575354	NM_015125.3	997	Ctg/Atg																																																																															
CIC	23152	MSKCC	GRCh37	19	42797780	42797780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	167	852	0	ENST00000575354.2:c.3832G>A	p.Val1278Ile	p.V1278I	ENST00000575354	NM_015125.3	1278	Gtc/Atc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39283850	39283850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	73	137	0	ENST00000402219.2:c.503C>T	p.Ala168Val	p.A168V	ENST00000402219	NM_005633.3	168	gCt/gTt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48032110	48032111	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	71	344	0	ENST00000234420.5:c.3504_3505dup	p.Pro1169HisfsTer16	p.P1169Hfs*16	ENST00000234420	NM_000179.2	1167	ctc/ctCAc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719270	61719270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	119	348	0	ENST00000401558.2:c.1787G>A	p.Arg596His	p.R596H	ENST00000401558	NM_003400.3	596	cGc/cAc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99172092	99172092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	135	678	0	ENST00000074304.5:c.1658G>A	p.Arg553Gln	p.R553Q	ENST00000074304	NM_001134224.1	553	cGg/cAg																																																																															
CASP8	841	MSKCC	GRCh37	2	202123055	202123055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	106	530	1	ENST00000358485.4:c.101G>A	p.Gly34Asp	p.G34D	ENST00000358485	NM_001080125.1	34	gGc/gAc																																																																															
CASP8	841	MSKCC	GRCh37	2	202141584	202141584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	43	377	0	ENST00000358485.4:c.872C>A	p.Pro291His	p.P291H	ENST00000358485	NM_001080125.1	291	cCt/cAt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	44	333	0	ENST00000375687.4:c.1933_1934dup	p.Gly646ValfsTer58	p.G646Vfs*58	ENST00000375687	NM_015338.5	642	-/GG																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845277	42845277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	164	805	4	ENST00000398585.3:c.985G>A	p.Val329Met	p.V329M	ENST00000398585	NM_001135099.1	329	Gtg/Atg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713435	30713435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	136	624	2	ENST00000359013.4:c.835C>T	p.Arg279Cys	p.R279C	ENST00000359013	NM_001024847.2	279	Cgc/Tgc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52613079	52613079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	86	393	0	ENST00000394830.3:c.3449G>A	p.Arg1150His	p.R1150H	ENST00000394830	NM_018313.4	1150	cGt/cAt																																																																															
MITF	4286	MSKCC	GRCh37	3	69928358	69928358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	85	468	0	ENST00000352241.4:c.178C>T	p.Arg60Cys	p.R60C	ENST00000352241	NM_198159.2	60	Cgc/Tgc																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427727	72427727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	75	434	0	ENST00000477973.2:c.761G>A	p.Val255Ile	p.V255I	ENST00000477973	NM_012234.5	255	Gtc/Atc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204912	128204912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	220	934	0	ENST00000341105.2:c.529C>T	p.Pro177Ser	p.P177S	ENST00000341105	NM_032638.4	177	Cca/Tca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	130	372	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185190816	185190816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	71	787	1	ENST00000265026.3:c.1697C>T	p.Ala566Val	p.A566V	ENST00000265026	NM_004721.4	566	gCa/gTa																																																																															
BCL6	604	MSKCC	GRCh37	3	187447236	187447236	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	146	674	5	ENST00000232014.4:c.957delC	p.Asn320MetfsTer4	p.N320Mfs*4	ENST00000232014	NM_001130845.1	319	ccC/cc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1976713	1976713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	124	701	0	ENST00000382891.5:c.3496G>A	p.Val1166Ile	p.V1166I	ENST00000382891	NM_133335.3	1166	Gtc/Atc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524630	187524630	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	118	698	1	ENST00000441802.2:c.11050C>T	p.Gln3684Ter	p.Q3684*	ENST00000441802	NM_005245.3	3684	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540211	187540211	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	96	407	0	ENST00000441802.2:c.7529T>C	p.Leu2510Pro	p.L2510P	ENST00000441802	NM_005245.3	2510	cTg/cCg																																																																															
TERT	7015	MSKCC	GRCh37	5	1282628	1282628	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	195	732	0	ENST00000310581.5:c.1685A>G	p.Tyr562Cys	p.Y562C	ENST00000310581	NM_198253.2	562	tAt/tGt																																																																															
TERT	7015	MSKCC	GRCh37	5	1293661	1293661	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	80	965	0	ENST00000310581.5:c.1340G>T	p.Arg447Leu	p.R447L	ENST00000310581	NM_198253.2	447	cGc/cTc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526775	31526775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	116	718	1	ENST00000344624.3:c.265G>A	p.Ala89Thr	p.A89T	ENST00000344624		89	Gcg/Acg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161221	56161221	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781300314		P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	107	329	0	ENST00000399503.3:c.1090C>T	p.Arg364Trp	p.R364W	ENST00000399503	NM_005921.1	364	Cgg/Tgg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177584	56177584	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368201444		P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	103	421	0	ENST00000399503.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000399503	NM_005921.1	853	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	135	258	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	89	252	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176671242	176671242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	98	230	0	ENST00000439151.2:c.4349C>T	p.Ala1450Val	p.A1450V	ENST00000439151	NM_022455.4	1450	gCc/gTc																																																																															
IRF4	3662	MSKCC	GRCh37	6	397231	397231	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	165	441	0	ENST00000380956.4:c.616C>T	p.Gln206Ter	p.Q206*	ENST00000380956	NM_001195286.1	206	Caa/Taa																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839945	27839945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	82	805	0	ENST00000328488.2:c.149G>A	p.Arg50His	p.R50H	ENST00000328488	NM_003533.2	50	cGc/cAc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818245	32818245	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	149	740	1	ENST00000354258.4:c.1280C>A	p.Ala427Asp	p.A427D	ENST00000354258	NM_000593.5	427	gCc/gAc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818837	32818837	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	157	788	0	ENST00000354258.4:c.1114C>T	p.Arg372Ter	p.R372*	ENST00000354258	NM_000593.5	372	Cga/Tga																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821091	32821091	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	184	984	1	ENST00000354258.4:c.503C>A	p.Pro168Gln	p.P168Q	ENST00000354258	NM_000593.5	168	cCg/cAg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553776	106553776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	37	470	0	ENST00000369096.4:c.1741G>A	p.Ala581Thr	p.A581T	ENST00000369096	NM_001198.3	581	Gcc/Acc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528907	157528907	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	148	600	0	ENST00000346085.5:c.6632A>G	p.Asn2211Ser	p.N2211S	ENST00000346085	NM_020732.3	2211	aAc/aGc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2954952	2954952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	62	803	0	ENST00000396946.4:c.2758C>T	p.Arg920Cys	p.R920C	ENST00000396946	NM_032415.4	920	Cgc/Tgc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508836	106508836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	119	568	0	ENST00000359195.3:c.830G>A	p.Arg277Gln	p.R277Q	ENST00000359195	NM_002649.2	277	cGg/cAg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141542548	141542548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	124	632	0	ENST00000220592.5:c.2438C>T	p.Ala813Val	p.A813V	ENST00000220592	NM_012154.3	813	gCc/gTc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145736900	145736900	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	191	969	1	ENST00000428558.2:c.3541C>T	p.Arg1181Ter	p.R1181*	ENST00000428558	NM_004260.3	1181	Cga/Tga																																																																															
JAK2	3717	MSKCC	GRCh37	9	5078342	5078342	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	40	114	0	ENST00000381652.3:c.2033del	p.Asn678IlefsTer53	p.N678Ifs*53	ENST00000381652	NM_004972.3	677	Aaa/aa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5123061	5123061	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	79	414	0	ENST00000381652.3:c.3117C>A	p.Ser1039Arg	p.S1039R	ENST00000381652	NM_004972.3	1039	agC/agA																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126730	5126730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	59	278	0	ENST00000381652.3:c.3338G>A	p.Arg1113His	p.R1113H	ENST00000381652	NM_004972.3	1113	cGc/cAc																																																																															
TEK	7010	MSKCC	GRCh37	9	27157952	27157952	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	103	690	0	ENST00000380036.4:c.176G>T	p.Arg59Met	p.R59M	ENST00000380036	NM_000459.3	59	aGg/aTg																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966665	36966665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	85	592	1	ENST00000358127.4:c.661C>T	p.Arg221Trp	p.R221W	ENST00000358127	NM_001280556.1	221	Cgg/Tgg																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80336333	80336333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	63	423	0	ENST00000286548.4:c.986C>T	p.Thr329Met	p.T329M	ENST00000286548	NM_002072.3	329	aCg/aTg																																																																															
ABL1	25	MSKCC	GRCh37	9	133759416	133759416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	134	879	1	ENST00000318560.5:c.1739C>T	p.Pro580Leu	p.P580L	ENST00000318560	NM_005157.4	580	cCg/cTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396836	139396836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	158	767	0	ENST00000277541.6:c.5272C>T	p.Arg1758Cys	p.R1758C	ENST00000277541	NM_017617.3	1758	Cgc/Tgc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139794916	139794916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	114	598	0	ENST00000247668.2:c.310C>T	p.Pro104Ser	p.P104S	ENST00000247668	NM_021138.3	104	Ccg/Tcg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032572	47032572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	187	401	0	ENST00000329236.7:c.247C>T	p.Arg83Trp	p.R83W	ENST00000329236	NM_001204466.1	83	Cgg/Tgg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123220555	123220555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	131	296	1	ENST00000218089.9:c.3212G>A	p.Arg1071Gln	p.R1071Q	ENST00000218089	NM_001042749.1	1071	cGg/cAg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432116	121432116	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	142	854	0	ENST00000257555.6:c.863G>C	p.Gly288Ala	p.G288A	ENST00000257555		288	gGg/gCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0043096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	129	350	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177384	56177418	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTTTCTTTCAGGTATAAGAAGCTGCTGTCCCTC	TTTTTTCTTTCAGGTATAAGAAGCTGCTGTCCCTC	-			P-0043096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	61	237	0	ENST00000399503.3:c.2370-11_2393del		p.X790_splice	ENST00000399503	NM_005921.1	790																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56179390	56179391	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	64	203	0	ENST00000399503.3:c.3705dup	p.Pro1236ThrfsTer3	p.P1236Tfs*3	ENST00000399503	NM_005921.1	1235	caa/cAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0043144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	164	399	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	31	120	2	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
ERG	2078	MSKCC	GRCh37	21	39775467	39775467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	112	344	1	ENST00000288319.7:c.553G>A	p.Ala185Thr	p.A185T	ENST00000288319	NM_182918.3	185	Gcc/Acc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711012	114711012	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	80	215	0	ENST00000543371.1:c.238del	p.Arg80GlyfsTer28	p.R80Gfs*28	ENST00000543371	NM_001198531.1	79	tCc/tc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805917	89805917	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	126	452	0	ENST00000389301.3:c.3979C>G	p.His1327Asp	p.H1327D	ENST00000389301	NM_000135.2	1327	Cac/Gac																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	84	518	3	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2951838	2951838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199916182		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	178	840	2	ENST00000396946.4:c.3112G>A	p.Ala1038Thr	p.A1038T	ENST00000396946	NM_032415.4	1038	Gcc/Acc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	39	380	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	156	868	5	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
ATRX	546	MSKCC	GRCh37	X	76909629	76909629	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	60	562	2	ENST00000373344.5:c.4276C>T	p.Arg1426Ter	p.R1426*	ENST00000373344	NM_000489.3	1426	Cga/Tga																																																																															
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	62	285	6	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																															
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	30	212	2	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	344	704	0	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	46	271	0	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	36	201	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
FLT3	2322	MSKCC	GRCh37	13	28636143	28636143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	167	681	0	ENST00000241453.7:c.229G>A	p.Glu77Lys	p.E77K	ENST00000241453	NM_004119.2	77	Gaa/Aaa																																																																															
NF1	4763	MSKCC	GRCh37	17	29556463	29556463	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	79	450	0	ENST00000358273.4:c.2835del	p.Phe945LeufsTer9	p.F945Lfs*9	ENST00000358273	NM_001042492.2	944	Ttt/tt																																																																															
RB1	5925	MSKCC	GRCh37	13	49030479	49030479	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	51	355	0	ENST00000267163.4:c.1959delA	p.Val654CysfsTer4	p.V654Cfs*4	ENST00000267163	NM_000321.2	652	Aaa/aa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435153	110435153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	192	914	0	ENST00000375856.3:c.3248C>T	p.Pro1083Leu	p.P1083L	ENST00000375856	NM_003749.2	1083	cCg/cTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	335	917	1	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646981	23646981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs587776408		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	131	763	2	ENST00000261584.4:c.886del	p.Met296Ter	p.M296*	ENST00000261584	NM_024675.3	296	Atg/tg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372389	55372389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	180	996	0	ENST00000297316.4:c.1079G>A	p.Arg360His	p.R360H	ENST00000297316	NM_022454.3	360	cGc/cAc																																																																															
PARK2	5071	MSKCC	GRCh37	6	161781122	161781122	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	139	588	0	ENST00000366898.1:c.1283delA	p.Asn428MetfsTer7	p.N428Mfs*7	ENST00000366898	NM_004562.2	428	aAt/at																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099579	157099579	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	14	156	0	ENST00000346085.5:c.521del	p.Pro174ArgfsTer6	p.P174Rfs*6	ENST00000346085	NM_020732.3	172	gaC/ga																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871053	12871053	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	58	413	0	ENST00000228872.4:c.285del	p.Gly97ValfsTer22	p.G97Vfs*22	ENST00000228872	NM_004064.3	94	Ccc/cc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343537	343537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	250	1034	1	ENST00000262320.3:c.2137C>T	p.Arg713Cys	p.R713C	ENST00000262320	NM_003502.3	713	Cgt/Tgt																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116262	209116263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs754375602		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	29	314	0	ENST00000345146.2:c.13dup	p.Ile5AsnfsTer13	p.I5Nfs*13	ENST00000345146	NM_005896.2	5	atc/aAtc																																																																															
TP63	8626	MSKCC	GRCh37	3	189526209	189526210	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	173	842	0	ENST00000264731.3:c.480_481delTC	p.Pro161IlefsTer36	p.P161Ifs*36	ENST00000264731	NM_003722.4	158	gCT/g																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713386	40713386	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	176	867	0	ENST00000373198.4:c.4129C>T	p.Arg1377Ter	p.R1377*	ENST00000373198	NM_133170.3	1377	Cga/Tga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954273	32954273	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	68	470	0	ENST00000380152.3:c.9253delA	p.Thr3085GlnfsTer19	p.T3085Qfs*19	ENST00000380152		3083	Aaa/aa																																																																															
REL	5966	MSKCC	GRCh37	2	61149057	61149057	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	80	445	0	ENST00000295025.8:c.1247C>G	p.Ala416Gly	p.A416G	ENST00000295025	NM_002908.2	416	gCc/gGc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681120	117681120	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	113	507	0	ENST00000368508.3:c.3500delT	p.Leu1167Ter	p.L1167*	ENST00000368508	NM_002944.2	1167	tTa/ta																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	150	681	10	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098392	11098392	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	153	818	0	ENST00000344626.4:c.914del	p.Pro305ArgfsTer21	p.P305Rfs*21	ENST00000344626	NM_003072.3	304	Ccc/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991697	72991699	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	88	480	5	ENST00000268489.5:c.2346_2348del	p.Ala784del	p.A784del	ENST00000268489	NM_006885.3	782	gcGGCa/gca																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813396	102813396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	167	673	0	ENST00000307046.8:c.293G>A	p.Arg98Gln	p.R98Q	ENST00000307046	NM_001111285.1	98	cGg/cAg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956723	68956723	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	136	649	0	ENST00000288368.4:c.841C>T	p.Arg281Trp	p.R281W	ENST00000288368	NM_024870.2	281	Cgg/Tgg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625110	69625110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	125	830	0	ENST00000334134.2:c.683C>T	p.Ser228Leu	p.S228L	ENST00000334134	NM_005247.2	228	tCg/tTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29661917	29661917	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	78	524	0	ENST00000358273.4:c.5878del	p.Cys1960AlafsTer19	p.C1960Afs*19	ENST00000358273	NM_001042492.2	1958	cgT/cg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197713	66197713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	76	491	0	ENST00000273854.3:c.2986G>A	p.Ala996Thr	p.A996T	ENST00000273854	NM_004439.5	996	Gct/Act																																																																															
FANCA	2175	MSKCC	GRCh37	16	89811469	89811469	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147017625		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	170	775	1	ENST00000389301.3:c.3524C>T	p.Pro1175Leu	p.P1175L	ENST00000389301	NM_000135.2	1175	cCg/cTg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678720	52678720	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	75	470	0	ENST00000394830.3:c.899G>T	p.Arg300Met	p.R300M	ENST00000394830	NM_018313.4	300	aGg/aTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41533773	41533773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	112	543	0	ENST00000263253.7:c.1739G>A	p.Arg580Gln	p.R580Q	ENST00000263253	NM_001429.3	580	cGa/cAa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	432249	432249	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	94	451	0	ENST00000399788.2:c.2274del	p.Asp759IlefsTer2	p.D759Ifs*2	ENST00000399788	NM_001042603.1	758	aaA/aa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933409	39933409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	196	737	3	ENST00000378444.4:c.1190C>T	p.Pro397Leu	p.P397L	ENST00000378444	NM_001123385.1	397	cCg/cTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528284	157528284	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	185	817	0	ENST00000346085.5:c.6013del	p.Val2005TrpfsTer16	p.V2005Wfs*16	ENST00000346085	NM_020732.3	2003	aaG/aa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2193766	2193766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	178	652	0	ENST00000398665.3:c.572C>T	p.Pro191Leu	p.P191L	ENST00000398665	NM_032482.2	191	cCg/cTg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687094	37687094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	123	635	1	ENST00000447079.4:c.3998G>A	p.Arg1333His	p.R1333H	ENST00000447079	NM_015083.1	1333	cGt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434351	49434351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	190	1006	2	ENST00000301067.7:c.7202G>A	p.Arg2401His	p.R2401H	ENST00000301067	NM_003482.3	2401	cGc/cAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136747	2136747	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769913589		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	238	939	4	ENST00000219476.3:c.4864G>A	p.Ala1622Thr	p.A1622T	ENST00000219476	NM_000548.3	1622	Gcc/Acc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922046	39922046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	206	858	0	ENST00000378444.4:c.4126G>T	p.Gly1376Ter	p.G1376*	ENST00000378444	NM_001123385.1	1376	Gga/Tga																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729291	41729291	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	81	532	0	ENST00000242208.4:c.1238del	p.Lys413ArgfsTer6	p.K413Rfs*6	ENST00000242208	NM_002192.2	413	aAg/ag																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868076	56868076	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141371158		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	101	574	0	ENST00000308159.5:c.1574G>A	p.Arg525Gln	p.R525Q	ENST00000308159	NM_014669.4	525	cGg/cAg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777670	9777670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	189	768	1	ENST00000377346.4:c.1006G>A	p.Asp336Asn	p.D336N	ENST00000377346	NM_005026.3	336	Gac/Aac																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256925	16256925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	139	734	0	ENST00000375759.3:c.4190C>T	p.Ala1397Val	p.A1397V	ENST00000375759	NM_015001.2	1397	gCa/gTa																																																																															
TET1	80312	MSKCC	GRCh37	10	70406668	70406668	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	80	624	0	ENST00000373644.4:c.4182T>A	p.Asn1394Lys	p.N1394K	ENST00000373644	NM_030625.2	1394	aaT/aaA																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941900	71941900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	192	906	4	ENST00000298229.2:c.1258G>A	p.Glu420Lys	p.E420K	ENST00000298229	NM_001567.3	420	Gag/Aag																																																																															
POLE	5426	MSKCC	GRCh37	12	133256771	133256771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	88	574	1	ENST00000320574.5:c.323C>T	p.Thr108Ile	p.T108I	ENST00000320574	NM_006231.2	108	aCc/aTc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563261	21563261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	222	1097	0	ENST00000382592.4:c.658G>A	p.Gly220Ser	p.G220S	ENST00000382592	NM_014572.2	220	Ggc/Agc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434623	110434623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	136	925	0	ENST00000375856.3:c.3778G>A	p.Glu1260Lys	p.E1260K	ENST00000375856	NM_003749.2	1260	Gag/Aag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43762229	43762231	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	143	820	0	ENST00000382044.4:c.1214_1216del	p.Glu405del	p.E405del	ENST00000382044	NM_001141980.1	405	gAAGga/gga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821686	72821686	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	55	348	1	ENST00000268489.5:c.10489C>A	p.Leu3497Met	p.L3497M	ENST00000268489	NM_006885.3	3497	Ctg/Atg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15973698	15973698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	117	518	0	ENST00000268712.3:c.4294C>T	p.Arg1432Trp	p.R1432W	ENST00000268712	NM_006311.3	1432	Cgg/Tgg																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733011	74733011	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	62	589	0	ENST00000359995.5:c.232del	p.Ala78ProfsTer154	p.A78Pfs*154	ENST00000359995	NM_001195427.1	78	Gcc/cc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603015	48603015	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	74	342	0	ENST00000342988.3:c.1316A>G	p.Asp439Gly	p.D439G	ENST00000342988	NM_005359.5	439	gAt/gGt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218684	36218684	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	190	915	0	ENST00000222270.7:c.4388C>A	p.Ser1463Tyr	p.S1463Y	ENST00000222270	NM_014727.1	1463	tCt/tAt																																																																															
AXL	558	MSKCC	GRCh37	19	41727883	41727883	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	193	957	1	ENST00000301178.4:c.508G>T	p.Asp170Tyr	p.D170Y	ENST00000301178	NM_021913.4	170	Gac/Tac																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909748	50909748	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	226	1011	0	ENST00000440232.2:c.1468C>T	p.Gln490Ter	p.Q490*	ENST00000440232	NM_002691.3	490	Cag/Tag																																																																															
MSH2	4436	MSKCC	GRCh37	2	47641407	47641407	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	92	392	0	ENST00000233146.2:c.793-1G>T		p.X265_splice	ENST00000233146	NM_000251.2	265																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212483927	212483927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	62	521	0	ENST00000342788.4:c.2276C>A	p.Pro759His	p.P759H	ENST00000342788	NM_005235.2	759	cCc/cAc																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288377	21288377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	196	775	0	ENST00000354336.3:c.622G>A	p.Ala208Thr	p.A208T	ENST00000354336	NM_005207.3	208	Gct/Act																																																																															
EP300	2033	MSKCC	GRCh37	22	41554474	41554474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	114	585	0	ENST00000263253.7:c.3560G>A	p.Arg1187His	p.R1187H	ENST00000263253	NM_001429.3	1187	cGt/cAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30648424	30648424	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	114	739	0	ENST00000359013.4:c.49T>C	p.Trp17Arg	p.W17R	ENST00000359013	NM_001024847.2	17	Tgg/Cgg																																																																															
MITF	4286	MSKCC	GRCh37	3	70014334	70014334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	159	654	2	ENST00000352241.4:c.1498G>A	p.Gly500Arg	p.G500R	ENST00000352241	NM_198159.2	500	Gga/Aga																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027015	71027015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	153	607	0	ENST00000318789.4:c.1312C>T	p.Arg438Trp	p.R438W	ENST00000318789	NM_032682.5	438	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178948037	178948037	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	35	230	0	ENST00000263967.3:c.2813del	p.Leu938TrpfsTer19	p.L938Wfs*19	ENST00000263967	NM_006218.2	937	Ttt/tt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806558	1806558	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	123	789	0	ENST00000260795.2:c.1274T>C	p.Leu425Pro	p.L425P	ENST00000260795		425	cTg/cCg																																																																															
TET2	54790	MSKCC	GRCh37	4	106156072	106156073	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	76	369	0	ENST00000380013.4:c.978dup	p.Ser327IlefsTer4	p.S327Ifs*4	ENST00000380013	NM_001127208.2	325	caa/cAaa																																																																															
TET2	54790	MSKCC	GRCh37	4	106197289	106197290	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	59	383	0	ENST00000380013.4:c.5625_5626del	p.Ala1876LysfsTer3	p.A1876Kfs*3	ENST00000380013	NM_001127208.2	1874	gaGTgt/gagt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538982	187538982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	111	506	0	ENST00000441802.2:c.8758G>A	p.Ala2920Thr	p.A2920T	ENST00000441802	NM_005245.3	2920	Gcc/Acc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540501	187540501	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	99	433	0	ENST00000441802.2:c.7239del	p.Ala2414ProfsTer9	p.A2414Pfs*9	ENST00000441802	NM_005245.3	2413	aaA/aa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131973793	131973793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	81	318	2	ENST00000265335.6:c.3496C>T	p.Arg1166Trp	p.R1166W	ENST00000265335		1166	Cgg/Tgg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987211	2987211	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	55	490	0	ENST00000396946.4:c.218C>T	p.Ala73Val	p.A73V	ENST00000396946	NM_032415.4	73	gCa/gTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878011	151878014	+	frameshift_variant	Frame_Shift_Del	DEL	AGTC	AGTC	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	96	401	0	ENST00000262189.6:c.6931_6934del	p.Asp2311LeufsTer53	p.D2311Lfs*53	ENST00000262189	NM_170606.2	2311	GACTct/ct																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400291	139400291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	217	941	0	ENST00000277541.6:c.4057G>A	p.Gly1353Ser	p.G1353S	ENST00000277541	NM_017617.3	1353	Ggc/Agc																																																																															
ARAF	369	MSKCC	GRCh37	X	47430825	47430825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	197	899	2	ENST00000377045.4:c.1790G>A	p.Cys597Tyr	p.C597Y	ENST00000377045	NM_001654.4	597	tGc/tAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70354996	70354996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	154	818	2	ENST00000374080.3:c.4918C>T	p.Pro1640Ser	p.P1640S	ENST00000374080		1640	Cca/Tca																																																																															
MED12	9968	MSKCC	GRCh37	X	70360687	70360687	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	35	177	0	ENST00000374080.3:c.6247C>T	p.Gln2083Ter	p.Q2083*	ENST00000374080		2083	Cag/Tag																																																																															
STAG2	10735	MSKCC	GRCh37	X	123191813	123191813	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	57	355	0	ENST00000218089.9:c.1402T>C	p.Phe468Leu	p.F468L	ENST00000218089	NM_001042749.1	468	Ttt/Ctt																																																																															
TET1	80312	MSKCC	GRCh37	10	70406662	70406662	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	76	632	0	ENST00000373644.4:c.4176del	p.Asn1394IlefsTer7	p.N1394Ifs*7	ENST00000373644	NM_030625.2	1392	caG/ca																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0043567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	50	307	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0043567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	46	334	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112175645	112175645	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	40	339	0	ENST00000257430.4:c.4354del	p.Val1452TyrfsTer21	p.V1452Yfs*21	ENST00000257430	NM_000038.5	1452	Gta/ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0043567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	80	582	0	ENST00000269305.4:c.782+1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71948712	71948712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	71	712	1	ENST00000298229.2:c.3424C>T	p.Arg1142Cys	p.R1142C	ENST00000298229	NM_001567.3	1142	Cgc/Tgc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763340	59763340	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	47	660	0	ENST00000259008.2:c.2762A>G	p.Tyr921Cys	p.Y921C	ENST00000259008	NM_032043.2	921	tAt/tGt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125806	47125808	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0043567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	50	321	0	ENST00000409792.3:c.5462_5464del	p.Leu1821del	p.L1821del	ENST00000409792	NM_014159.6	1821	cTTCca/cca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577045	7577046	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	202	709	0	ENST00000269305.4:c.892dup	p.Glu298GlyfsTer8	p.E298Gfs*8	ENST00000269305	NM_001126112.2	298	gag/gGag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628173	187628195	+	frameshift_variant	Frame_Shift_Del	DEL	GGACTTTCACACGATAATTAGGT	GGACTTTCACACGATAATTAGGT	-			P-0043581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	125	603	0	ENST00000441802.2:c.2787_2809del	p.Pro930ArgfsTer18	p.P930Rfs*18	ENST00000441802	NM_005245.3	929	ccACCTAATTATCGTGTGAAAGTCCga/ccga																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0043717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	89	230	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0043717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	253	507	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0043717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	155	257	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546721	9546721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	122	234	0	ENST00000353224.5:c.1301C>T	p.Ala434Val	p.A434V	ENST00000353224	NM_177990.2	434	gCg/gTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412941	63412941	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	445	625	0	ENST00000330258.3:c.226G>T	p.Gly76Ter	p.G76*	ENST00000330258	NM_152424.3	76	Gga/Tga																																																																															
MGA	23269	MSKCC	GRCh37	15	42052632	42052632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	230	340	0	ENST00000219905.7:c.7303C>T	p.Arg2435Trp	p.R2435W	ENST00000219905	NM_001164273.1	2435	Cgg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790072	40790072	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61753667		P-0043717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	260	467	2	ENST00000373198.4:c.2659G>A	p.Ala887Thr	p.A887T	ENST00000373198	NM_133170.3	887	Gcc/Acc																																																																															
TET1	80312	MSKCC	GRCh37	10	70446192	70446192	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	209	286	0	ENST00000373644.4:c.5132A>G	p.Tyr1711Cys	p.Y1711C	ENST00000373644	NM_030625.2	1711	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	269	806	1	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105709	27105709	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	64	373	0	ENST00000324856.7:c.5320G>C	p.Glu1774Gln	p.E1774Q	ENST00000324856	NM_006015.4	1774	Gaa/Caa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602799	10602799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	304	891	0	ENST00000171111.5:c.779G>T	p.Arg260Leu	p.R260L	ENST00000171111	NM_203500.1	260	cGa/cTa																																																																															
REL	5966	MSKCC	GRCh37	2	61149011	61149011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	139	322	0	ENST00000295025.8:c.1201C>T	p.His401Tyr	p.H401Y	ENST00000295025	NM_002908.2	401	Cat/Tat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106159	27106159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	111	586	0	ENST00000324856.7:c.5770G>A	p.Glu1924Lys	p.E1924K	ENST00000324856	NM_006015.4	1924	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105796	27105796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	53	465	0	ENST00000324856.7:c.5407G>A	p.Glu1803Lys	p.E1803K	ENST00000324856	NM_006015.4	1803	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105614	27105614	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	103	508	0	ENST00000324856.7:c.5225G>C	p.Arg1742Thr	p.R1742T	ENST00000324856	NM_006015.4	1742	aGa/aCa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105727	27105727	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	60	366	0	ENST00000324856.7:c.5338G>C	p.Glu1780Gln	p.E1780Q	ENST00000324856	NM_006015.4	1780	Gaa/Caa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105895	27105895	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	76	528	0	ENST00000324856.7:c.5506G>C	p.Glu1836Gln	p.E1836Q	ENST00000324856	NM_006015.4	1836	Gag/Cag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106166	27106166	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	108	576	0	ENST00000324856.7:c.5777G>T	p.Gly1926Val	p.G1926V	ENST00000324856	NM_006015.4	1926	gGa/gTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106279	27106279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	99	657	0	ENST00000324856.7:c.5890G>A	p.Glu1964Lys	p.E1964K	ENST00000324856	NM_006015.4	1964	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100664	8100664	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	225	813	0	ENST00000346208.3:c.638C>G	p.Ser213Trp	p.S213W	ENST00000346208		213	tCg/tGg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435176	18435176	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	113	318	0	ENST00000266497.5:c.161A>G	p.Tyr54Cys	p.Y54C	ENST00000266497		54	tAc/tGc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43705394	43705394	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	260	797	0	ENST00000382044.4:c.5228T>G	p.Met1743Arg	p.M1743R	ENST00000382044	NM_001141980.1	1743	aTg/aGg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134529	2134529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	232	906	1	ENST00000219476.3:c.4306G>A	p.Asp1436Asn	p.D1436N	ENST00000219476	NM_000548.3	1436	Gac/Aac																																																																															
EZH1	2145	MSKCC	GRCh37	17	40859977	40859977	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	290	425	0	ENST00000428826.2:c.1659C>G	p.Asp553Glu	p.D553E	ENST00000428826		553	gaC/gaG																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306619	41306619	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	218	740	0	ENST00000373198.4:c.1040T>A	p.Leu347Gln	p.L347Q	ENST00000373198	NM_133170.3	347	cTg/cAg																																																																															
NF2	4771	MSKCC	GRCh37	22	30050650	30050650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	145	325	0	ENST00000338641.4:c.452G>T	p.Gly151Val	p.G151V	ENST00000338641	NM_000268.3	151	gGt/gTt																																																																															
ATR	545	MSKCC	GRCh37	3	142269060	142269060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	184	436	0	ENST00000350721.4:c.2890G>T	p.Val964Leu	p.V964L	ENST00000350721	NM_001184.3	964	Gtg/Ttg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535384	66535384	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	127	307	0	ENST00000273854.3:c.77C>G	p.Ala26Gly	p.A26G	ENST00000273854	NM_004439.5	26	gCg/gGg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539015	187539015	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	177	490	0	ENST00000441802.2:c.8725A>G	p.Thr2909Ala	p.T2909A	ENST00000441802	NM_005245.3	2909	Acc/Gcc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562666	176562666	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	190	509	0	ENST00000439151.2:c.562C>G	p.Gln188Glu	p.Q188E	ENST00000439151	NM_022455.4	188	Cag/Gag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030317	180030322	+	protein_altering_variant	In_Frame_Del	DEL	CAGGCC	CAGGCC	GAG			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	387	763	5	ENST00000261937.6:c.3962_3967delinsCTC	p.Arg1321_Glu1323delinsProGln	p.R1321_E1323delinsPQ	ENST00000261937	NM_182925.4	1321	cGGCCTGag/cCTCag																																																																															
HGF	3082	MSKCC	GRCh37	7	81346592	81346592	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	87	296	0	ENST00000222390.5:c.1361C>G	p.Thr454Arg	p.T454R	ENST00000222390	NM_000601.4	454	aCg/aGg																																																																															
HGF	3082	MSKCC	GRCh37	7	81399214	81399214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	227	576	1	ENST00000222390.5:c.74C>T	p.Ala25Val	p.A25V	ENST00000222390	NM_000601.4	25	gCc/gTc																																																																															
AR	367	MSKCC	GRCh37	X	66766355	66766355	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	38	24	0	ENST00000374690.3:c.1367G>T	p.Gly456Val	p.G456V	ENST00000374690	NM_000044.3	456	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0043883-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			357	103	373	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143045788	143045788	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043883-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			428	68	464	1	ENST00000262992.4:c.1846C>T	p.Gln616Ter	p.Q616*	ENST00000262992	NM_001101669.1	616	Cag/Tag																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165603	118165603	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043883-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			381	81	375	0	ENST00000369448.3:c.113G>C	p.Arg38Pro	p.R38P	ENST00000369448	NM_017709.3	38	cGa/cCa																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313220	30313220	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043883-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			504	86	507	0	ENST00000262643.3:c.914A>T	p.Tyr305Phe	p.Y305F	ENST00000262643	NM_001238.2	305	tAt/tTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098406	47098406	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043883-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			349	63	450	0	ENST00000409792.3:c.6868C>T	p.Gln2290Ter	p.Q2290*	ENST00000409792	NM_014159.6	2290	Cag/Tag																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225482	26225482	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043883-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			412	52	341	0	ENST00000360408.1:c.100G>T	p.Gly34Cys	p.G34C	ENST00000360408	NM_003532.2	34	Ggc/Tgc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044559	47044559	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043883-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			617	111	712	1	ENST00000329236.7:c.1822G>T	p.Glu608Ter	p.E608*	ENST00000329236	NM_001204466.1	608	Gag/Tag																																																																															
MED12	9968	MSKCC	GRCh37	X	70357730	70357731	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0043883-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			667	89	603	2	ENST00000374080.3:c.5981_5982delinsAT	p.Arg1994His	p.R1994H	ENST00000374080		1994	cGG/cAT																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797845	45797845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	191	569	3	ENST00000372115.3:c.884G>A	p.Arg295His	p.R295H	ENST00000372115	NM_001048171.1	295	cGc/cAc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65351945	65351945	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0043905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	21	317	0	ENST00000342505.4:c.3G>A	p.Met1?	p.M1?	ENST00000342505	NM_002227.2	1	atG/atA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425330	49425360	+	frameshift_variant	Frame_Shift_Del	DEL	GGTTTCTGCTAGGTTGTCTGGGGGATCCCAA	GGTTTCTGCTAGGTTGTCTGGGGGATCCCAA	-			P-0043905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	244	664	2	ENST00000301067.7:c.13128_13158del	p.Trp4377ArgfsTer16	p.W4377Rfs*16	ENST00000301067	NM_003482.3	4376	ccTTGGGATCCCCCAGACAACCTAGCAGAAACC/cc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061839	38061839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	282	756	6	ENST00000250448.2:c.150G>A	p.Met50Ile	p.M50I	ENST00000250448	NM_004496.3	50	atG/atA																																																																															
PALB2	79728	MSKCC	GRCh37	16	23614896	23614906	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTACACTGA	CAGTACACTGA	-			P-0043905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	268	456	6	ENST00000261584.4:c.3435_3445del	p.Gln1146ProfsTer7	p.Q1146Pfs*7	ENST00000261584	NM_024675.3	1145	ggTCAGTGTACTGcc/ggcc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546901	9546901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	293	509	8	ENST00000353224.5:c.1121C>T	p.Pro374Leu	p.P374L	ENST00000353224	NM_177990.2	374	cCg/cTg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31369176	31369176	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	352	522	6	ENST00000328111.2:c.160C>T	p.Arg54Ter	p.R54*	ENST00000328111	NM_006892.3	54	Cga/Tga																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202825	128202833	+	inframe_deletion	In_Frame_Del	DEL	CACAGTTGA	CACAGTTGA	-			P-0043905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	378	614	6	ENST00000341105.2:c.887_895del	p.Val296_Cys298del	p.V296_C298del	ENST00000341105	NM_032638.4	296	gTCAACTGTGgg/ggg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0044206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	240	564	0	ENST00000269305.4:c.374C>G	p.Thr125Arg	p.T125R	ENST00000269305	NM_001126112.2	125	aCg/aGg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123325035	123325035	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	74	523	0	ENST00000358487.5:c.293C>G	p.Thr98Arg	p.T98R	ENST00000358487	NM_000141.4	98	aCg/aGg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944282	81944282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	142	653	0	ENST00000359376.3:c.1891C>T	p.Leu631Phe	p.L631F	ENST00000359376	NM_002661.3	631	Ctc/Ttc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940914	49940914	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	74	700	0	ENST00000296474.3:c.129G>C	p.Lys43Asn	p.K43N	ENST00000296474	NM_002447.2	43	aaG/aaC																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061131	38061185	+	stop_gained	Nonsense_Mutation	DEL	GCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCG	GCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCG	T			P-0044206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	221	145	0	ENST00000250448.2:c.804_858delinsA	p.Cys268_Gly286delinsTer	p.C268_G286delins*	ENST00000250448	NM_004496.3	268	tgCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGC/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0045029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	232	479	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	45	326	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	79	266	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
CASP8	841	MSKCC	GRCh37	2	202149799	202149799	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	36	397	0	ENST00000358485.4:c.1245delT	p.Phe415LeufsTer26	p.F415Lfs*26	ENST00000358485	NM_001080125.1	414	Ttt/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0045032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	22	308	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220717	1220717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0045032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	22	682	0	ENST00000326873.7:c.734+1G>T		p.X245_splice	ENST00000326873	NM_000455.4	245																																																																																
TBX3	6926	MSKCC	GRCh37	12	115120855	115120855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	24	573	0	ENST00000257566.3:c.151G>A	p.Ala51Thr	p.A51T	ENST00000257566	NM_016569.3	51	Gcg/Acg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332729	70332729	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	28	444	0	ENST00000373644.4:c.634G>C	p.Glu212Gln	p.E212Q	ENST00000373644	NM_030625.2	212	Gag/Cag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914329	32914329	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0045032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	10	365	0	ENST00000380152.3:c.5837C>G	p.Ser1946Ter	p.S1946*	ENST00000380152		1946	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577133	7577133	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	43	573	0	ENST00000269305.4:c.805A>T	p.Ser269Cys	p.S269C	ENST00000269305	NM_001126112.2	269	Agc/Tgc																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428015	33428015	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	30	572	0	ENST00000335858.7:c.608G>T	p.Gly203Val	p.G203V	ENST00000335858	NM_133629.2	203	gGg/gTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770631	40770631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	19	289	0	ENST00000373198.4:c.2751G>T	p.Glu917Asp	p.E917D	ENST00000373198	NM_133170.3	917	gaG/gaT																																																																															
SESN1	27244	MSKCC	GRCh37	6	109315790	109315790	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	11	427	0	ENST00000436639.2:c.995T>A	p.Val332Asp	p.V332D	ENST00000436639	NM_014454.2	332	gTt/gAt																																																																															
MYC	4609	MSKCC	GRCh37	8	128750711	128750711	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	41	663	0	ENST00000377970.2:c.248G>T	p.Gly83Val	p.G83V	ENST00000377970	NM_002467.4	83	gGg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0045034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	69	428	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114241	115114241	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	42	391	0	ENST00000257566.3:c.976G>C	p.Asp326His	p.D326H	ENST00000257566	NM_016569.3	326	Gat/Cat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831944	72831944	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	44	432	0	ENST00000268489.5:c.4637A>G	p.Lys1546Arg	p.K1546R	ENST00000268489	NM_006885.3	1546	aAg/aGg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32189025	32189025	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	97	506	0	ENST00000375023.3:c.529C>A	p.Gln177Lys	p.Q177K	ENST00000375023	NM_004557.3	177	Cag/Aag																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128230269	128230269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	38	323	0	ENST00000265960.3:c.1327G>A	p.Ala443Thr	p.A443T	ENST00000265960	NM_001006617.1	443	Gct/Act																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0045035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	49	370	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0045035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	129	566	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570033	95570033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	18	332	0	ENST00000343455.3:c.3700G>A	p.Glu1234Lys	p.E1234K	ENST00000343455	NM_177438.2	1234	Gaa/Aaa																																																																															
ATM	472	MSKCC	GRCh37	11	108236215	108236215	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	131	403	0	ENST00000278616.4:c.9151G>C	p.Gly3051Arg	p.G3051R	ENST00000278616	NM_000051.3	3051	Gga/Cga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16012228	16012228	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0045039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	33	201	0	ENST00000268712.3:c.2056-2A>C		p.X686_splice	ENST00000268712	NM_006311.3	686																																																																																
MYCN	4613	MSKCC	GRCh37	2	16085839	16085839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	104	414	0	ENST00000281043.3:c.1015G>A	p.Val339Met	p.V339M	ENST00000281043	NM_005378.4	339	Gtg/Atg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61726998	61727332	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCCAATGTTTGGGCCATTCTTGTTTCAGTATCTAAAACAAGACATGAAATGTTAATCGCACTTCATTTCTCAAAGGCAAATAAAACAAACTTCAAAGAAATTATGTAATGGATAAAGGCAGGAGTAAGGATAAATCACTTTTCATTTTCTCCTCCTTTATTAAAGGAAGAAATGTGCCACCCTCTTCACCCTACTGGGTAGAAAACAAAACACAAAGTCTTTTATCTTAATCACCGCAGGACCCTTTTCAATTATCCTAATGAAAGGTCCAATCCGTCTAATGGGTCTGTCTGTGTATTAGTATCTGCCTGATAGATATGTAGAAATTATTCTA	GGCCAATGTTTGGGCCATTCTTGTTTCAGTATCTAAAACAAGACATGAAATGTTAATCGCACTTCATTTCTCAAAGGCAAATAAAACAAACTTCAAAGAAATTATGTAATGGATAAAGGCAGGAGTAAGGATAAATCACTTTTCATTTTCTCCTCCTTTATTAAAGGAAGAAATGTGCCACCCTCTTCACCCTACTGGGTAGAAAACAAAACACAAAGTCTTTTATCTTAATCACCGCAGGACCCTTTTCAATTATCCTAATGAAAGGTCCAATCCGTCTAATGGGTCTGTCTGTGTATTAGTATCTGCCTGATAGATATGTAGAAATTATTCTA	-			P-0045039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	26	323	0	ENST00000401558.2:c.409-303_440del		p.X137_splice	ENST00000401558	NM_003400.3	137																																																																																
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0045042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	166	502	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
MITF	4286	MSKCC	GRCh37	3	69928358	69928358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	89	345	0	ENST00000352241.4:c.178C>T	p.Arg60Cys	p.R60C	ENST00000352241	NM_198159.2	60	Cgc/Tgc																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805624	46805624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	53	621	1	ENST00000290295.7:c.332C>T	p.Ala111Val	p.A111V	ENST00000290295	NM_006361.5	111	gCg/gTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8375994	8375994	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	29	268	0	ENST00000356435.5:c.4603T>G	p.Leu1535Val	p.L1535V	ENST00000356435		1535	Tta/Gta																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121435403	121435403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	24	632	0	ENST00000257555.6:c.1436C>A	p.Pro479His	p.P479H	ENST00000257555		479	cCt/cAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991985	72991985	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	26	422	0	ENST00000268489.5:c.2060A>T	p.Glu687Val	p.E687V	ENST00000268489	NM_006885.3	687	gAg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	88	144	0	ENST00000257430.4:c.3944del	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/ta																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405170	139405170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	105	671	0	ENST00000277541.6:c.2675G>A	p.Arg892His	p.R892H	ENST00000277541	NM_017617.3	892	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0045045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	100	513	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351548	89351548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	68	570	0	ENST00000301030.4:c.1402C>T	p.Arg468Cys	p.R468C	ENST00000301030	NM_001256183.1	468	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112173847	112173848	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0045045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	28	266	2	ENST00000257430.4:c.2556_2557delinsTT	p.Leu852_Glu853delinsPheTer	p.L852_E853delinsF*	ENST00000257430	NM_000038.5	852	ttGGag/ttTTag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411648	63411648	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	91	565	0	ENST00000330258.3:c.1519G>T	p.Glu507Ter	p.E507*	ENST00000330258	NM_152424.3	507	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	168	296	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	143	448	0	ENST00000269305.4:c.712T>C	p.Cys238Arg	p.C238R	ENST00000269305	NM_001126112.2	238	Tgt/Cgt																																																																															
JUN	3725	MSKCC	GRCh37	1	59248358	59248359	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	147	325	0	ENST00000371222.2:c.384dup	p.Ser129GlnfsTer181	p.S129Qfs*181	ENST00000371222	NM_002228.3	128	-/C																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0045057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	137	242	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0045096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	24	561	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0045096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	264	526	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0045096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	211	553	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
RB1	5925	MSKCC	GRCh37	13	48878184	48878240	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTGAGCGAGCAGAGCCGCCGTCGCCTCACGCGGGAAGGGCGCCCCGGGTGTGCGT	AGGTGAGCGAGCAGAGCCGCCGTCGCCTCACGCGGGAAGGGCGCCCCGGGTGTGCGT	-			P-0045096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	35	110	0	ENST00000267163.4:c.137+2_137+58del		p.X46_splice	ENST00000267163	NM_000321.2	46																																																																																
BRIP1	83990	MSKCC	GRCh37	17	59853804	59853804	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	29	409	0	ENST00000259008.2:c.2055G>C	p.Gln685His	p.Q685H	ENST00000259008	NM_032043.2	685	caG/caC																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0045099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	21	644	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
BRCA1	672	MSKCC	GRCh37	17	41209148	41209148	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	40	582	0	ENST00000357654.3:c.5198A>C	p.Asp1733Ala	p.D1733A	ENST00000357654	NM_007294.3	1733	gAt/gCt																																																																															
TET2	54790	MSKCC	GRCh37	4	106156949	106156949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	34	517	0	ENST00000380013.4:c.1850G>A	p.Arg617Lys	p.R617K	ENST00000380013	NM_001127208.2	617	aGg/aAg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149453013	149453013	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	24	560	0	ENST00000286301.3:c.933G>C	p.Gln311His	p.Q311H	ENST00000286301	NM_005211.3	311	caG/caC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0045119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	1239	491	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78428610	78428610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	147	296	0	ENST00000370768.2:c.1189G>A	p.Glu397Lys	p.E397K	ENST00000370768	NM_003902.3	397	Gaa/Aaa																																																																															
AXL	558	MSKCC	GRCh37	19	41754723	41754723	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0045119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	220	540	0	ENST00000301178.4:c.1709A>G	p.Lys570Arg	p.K570R	ENST00000301178	NM_021913.4	570	aAg/aGg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0045124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	188	464	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0045124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	126	298	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188854	32188854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1183058401		P-0045124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	198	547	1	ENST00000375023.3:c.700C>T	p.Arg234Trp	p.R234W	ENST00000375023	NM_004557.3	234	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0045124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	74	207	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578254	7578254	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	220	516	1	ENST00000269305.4:c.595G>T	p.Gly199Ter	p.G199*	ENST00000269305	NM_001126112.2	199	Gga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27022914	27022942	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCGCCGCCAGCAGCCTGGGCAACCCG	CCGCCGCCGCCAGCAGCCTGGGCAACCCG	-			P-0045124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	22	19	0	ENST00000324856.7:c.31_59del	p.Ser11AlafsTer90	p.S11Afs*90	ENST00000324856	NM_006015.4	7	cCCGCCGCCGCCAGCAGCCTGGGCAACCCG/c																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211898	36211899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775294431		P-0045124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	264	612	2	ENST00000222270.7:c.1656dup	p.Lys553GlnfsTer46	p.K553Qfs*46	ENST00000222270	NM_014727.1	550	gac/gaCc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119683	70119683	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0045124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	192	443	0	ENST00000245479.2:c.686-1G>T		p.X229_splice	ENST00000245479	NM_000346.3	229																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15292591	15292591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	247	513	2	ENST00000263388.2:c.2588C>T	p.Ser863Leu	p.S863L	ENST00000263388	NM_000435.2	863	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036946-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			403	12	254	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026078	48026078	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs188252826		P-0036946-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			469	7	290	0	ENST00000234420.5:c.956C>T	p.Thr319Met	p.T319M	ENST00000234420	NM_000179.2	319	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036946-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			809	5	482	0	ENST00000269305.4:c.569del	p.Pro190LeufsTer57	p.P190Lfs*57	ENST00000269305	NM_001126112.2	190	cCt/ct																																																																															
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0036946-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			977	9	594	0	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420213	49420213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036946-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			780	20	478	0	ENST00000301067.7:c.15536G>A	p.Arg5179His	p.R5179H	ENST00000301067	NM_003482.3	5179	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106561	27106561	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036946-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			945	5	522	1	ENST00000324856.7:c.6172G>T	p.Glu2058Ter	p.E2058*	ENST00000324856	NM_006015.4	2058	Gaa/Taa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630125	187630125	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs201488687		P-0036946-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			685	16	391	0	ENST00000441802.2:c.857A>G	p.Asn286Ser	p.N286S	ENST00000441802	NM_005245.3	286	aAt/aGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945478	151945478	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036946-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	6	540	1	ENST00000262189.6:c.2041G>T	p.Glu681Ter	p.E681*	ENST00000262189	NM_170606.2	681	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501191		P-0044841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	34	753	1	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0044841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1127	50	888	1	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177068	56177068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	10	284	0	ENST00000399503.3:c.2338G>A	p.Asp780Asn	p.D780N	ENST00000399503	NM_005921.1	780	Gat/Aat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041585	47041585	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	33	395	0	ENST00000329236.7:c.1576C>T	p.Gln526Ter	p.Q526*	ENST00000329236	NM_001204466.1	526	Cag/Tag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	47	470	0	ENST00000347630.2:c.305T>C	p.Phe102Ser	p.F102S	ENST00000347630	NM_001007230.1	102	tTc/tCc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779205	3779205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	22	587	0	ENST00000262367.5:c.5843C>T	p.Pro1948Leu	p.P1948L	ENST00000262367	NM_004380.2	1948	cCg/cTg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112940010	112940024	+	inframe_deletion	In_Frame_Del	DEL	TGGAGATCAGAGCCC	TGGAGATCAGAGCCC	-			P-0044899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	83	712	0	ENST00000351677.2:c.1663_1677del	p.Gly555_Pro559del	p.G555_P559del	ENST00000351677	NM_002834.3	554	agTGGAGATCAGAGCCCt/agt																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0044904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	237	810	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	235	347	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ATM	472	MSKCC	GRCh37	11	108213974	108213974	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	161	323	0	ENST00000278616.4:c.8294G>T	p.Gly2765Val	p.G2765V	ENST00000278616	NM_000051.3	2765	gGt/gTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038858	47038858	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	261	734	1	ENST00000329236.7:c.634C>T	p.Gln212Ter	p.Q212*	ENST00000329236	NM_001204466.1	212	Cag/Tag																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115282474	115282474	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	106	441	0	ENST00000438362.2:c.176A>T	p.His59Leu	p.H59L	ENST00000438362	NM_001242891.1	59	cAt/cTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426663	49426689	+	inframe_deletion	In_Frame_Del	DEL	TGTTGAAGCTGCTGCTGCTGTTGCTGC	TGTTGAAGCTGCTGCTGCTGTTGCTGC	-			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	36	418	0	ENST00000301067.7:c.11799_11825del	p.Gln3939_Gln3947del	p.Q3939_Q3947del	ENST00000301067	NM_003482.3	3933	caGCAGCAACAGCAGCAGCAGCTTCAACAa/caa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95566216	95566216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	150	540	0	ENST00000343455.3:c.4107G>A	p.Met1369Ile	p.M1369I	ENST00000343455	NM_177438.2	1369	atG/atA																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420335	88420335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	64	420	2	ENST00000360948.2:c.2351C>A	p.Thr784Asn	p.T784N	ENST00000360948	NM_001012338.2	784	aCc/aAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820622	3820622	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	181	754	0	ENST00000262367.5:c.2829G>T	p.Gln943His	p.Q943H	ENST00000262367	NM_004380.2	943	caG/caT																																																																															
STK11	6794	MSKCC	GRCh37	19	1207044	1207073	+	inframe_deletion	In_Frame_Del	DEL	GCTCATCGGCAAGTACCTGATGGGGGACCT	GCTCATCGGCAAGTACCTGATGGGGGACCT	-			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	405	725	0	ENST00000326873.7:c.135_164del	p.Ile46_Leu55del	p.I46_L55del	ENST00000326873	NM_000455.4	44	aaGCTCATCGGCAAGTACCTGATGGGGGACCTg/aag																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18272816	18272816	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	430	626	0	ENST00000222254.8:c.856A>C	p.Lys286Gln	p.K286Q	ENST00000222254	NM_005027.3	286	Aag/Cag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18974251	18974251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	326	473	1	ENST00000262803.5:c.2605G>T	p.Gly869Cys	p.G869C	ENST00000262803	NM_002911.3	869	Ggc/Tgc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082571	16082571	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	85	377	0	ENST00000281043.3:c.385G>C	p.Ala129Pro	p.A129P	ENST00000281043	NM_005378.4	129	Gcc/Ccc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225422375	225422375	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	215	351	0	ENST00000264414.4:c.264+1G>C		p.X88_splice	ENST00000264414	NM_003590.4	88																																																																																
PPARG	5468	MSKCC	GRCh37	3	12434171	12434171	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	118	407	0	ENST00000287820.6:c.539G>C	p.Cys180Ser	p.C180S	ENST00000287820	NM_015869.4	180	tGt/tCt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459846	149459846	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	243	691	0	ENST00000286301.3:c.361C>A	p.Gln121Lys	p.Q121K	ENST00000286301	NM_005211.3	121	Cag/Aag																																																																															
ABL1	25	MSKCC	GRCh37	9	133759379	133759379	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	369	661	0	ENST00000318560.5:c.1702G>T	p.Val568Leu	p.V568L	ENST00000318560	NM_005157.4	568	Gtg/Ttg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0044880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	28	472	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061845	38061862	+	inframe_deletion	In_Frame_Del	DEL	CATGTAGGTGTTCATGGA	CATGTAGGTGTTCATGGA	-			P-0044880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	42	678	1	ENST00000250448.2:c.127_144del	p.Ser43_Met48del	p.S43_M48del	ENST00000250448	NM_004496.3	43	TCCATGAACACCTACATG/-																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940157	71940157	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	210	614	0	ENST00000298229.2:c.542T>C	p.Val181Ala	p.V181A	ENST00000298229	NM_001567.3	181	gTc/gCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	344	505	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0017825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	145	375	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435780	56435780	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	202	296	0	ENST00000407977.2:c.1357G>T	p.Glu453Ter	p.E453*	ENST00000407977		453	Gaa/Taa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0017825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	44	139	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	296	779	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	440	820	1	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220640	1220640	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	496	831	0	ENST00000326873.7:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000326873	NM_000455.4	220	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910801	114910801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	161	750	1	ENST00000543371.1:c.920C>T	p.Thr307Met	p.T307M	ENST00000543371	NM_001198531.1	307	aCg/aTg																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154444	2154444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	118	729	1	ENST00000434045.2:c.484C>T	p.Pro162Ser	p.P162S	ENST00000434045	NM_001127598.1	162	Ccc/Tcc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	475197	475203	+	frameshift_variant	Frame_Shift_Del	DEL	CCCAAGC	CCCAAGC	-			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	112	911	4	ENST00000399788.2:c.434_440del	p.Arg145HisfsTer12	p.R145Hfs*12	ENST00000399788	NM_001042603.1	145	cGCTTGGGa/ca																																																																															
CCND2	894	MSKCC	GRCh37	12	4383360	4383360	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	258	769	0	ENST00000261254.3:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000261254	NM_001759.3	52	Caa/Taa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2135322	2135322	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	243	720	0	ENST00000219476.3:c.4661A>G	p.Gln1554Arg	p.Q1554R	ENST00000219476	NM_000548.3	1554	cAg/cGg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554420	63554420	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	153	737	0	ENST00000307078.5:c.319A>T	p.Thr107Ser	p.T107S	ENST00000307078	NM_004655.3	107	Acc/Tcc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610094	10610094	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	440	820	0	ENST00000171111.5:c.616T>A	p.Tyr206Asn	p.Y206N	ENST00000171111	NM_203500.1	206	Tac/Aac																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128015220	128015220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	383	668	1	ENST00000285398.2:c.2301G>T	p.Lys767Asn	p.K767N	ENST00000285398	NM_000122.1	767	aaG/aaT																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527748	157527760	+	frameshift_variant	Frame_Shift_Del	DEL	GACACCACCGAGC	GACACCACCGAGC	-			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	234	609	0	ENST00000346085.5:c.5473_5485del	p.Asp1825ThrfsTer22	p.D1825Tfs*22	ENST00000346085	NM_020732.3	1825	GACACCACCGAGCac/ac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2949690	2949690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	305	856	0	ENST00000396946.4:c.3254G>T	p.Arg1085Met	p.R1085M	ENST00000396946	NM_032415.4	1085	aGg/aTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81339462	81339463	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	GA			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	164	488	2	ENST00000222390.5:c.1541_1541+1delinsTC		p.X514_splice	ENST00000222390	NM_000601.4	514																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106526602	106526602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	208	589	0	ENST00000359195.3:c.2895C>A	p.Phe965Leu	p.F965L	ENST00000359195	NM_002649.2	965	ttC/ttA																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737126	145737126	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	317	811	1	ENST00000428558.2:c.3440T>A	p.Leu1147Gln	p.L1147Q	ENST00000428558	NM_004260.3	1147	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0021014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1252	123	1142	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0044740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	302	588	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	25	297	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0044570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	22	332	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612638	228612638	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146830002		P-0044570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	168	464	0	ENST00000366696.1:c.389G>A	p.Arg130His	p.R130H	ENST00000366696	NM_003493.2	130	cGt/cAt																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370318	40370319	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	272	662	0	ENST00000293328.3:c.1019dup	p.Val341GlyfsTer36	p.V341Gfs*36	ENST00000293328	NM_012448.3	340	cag/caAg																																																																															
MGA	23269	MSKCC	GRCh37	15	42042778	42042784	+	stop_gained	Nonsense_Mutation	ONP	GACTACC	GACTACC	AACTAAA			P-0044570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	62	342	0	ENST00000219905.7:c.6973_6979delinsAACTAAA	p.Asp2325_Gln2327delinsAsnTerLys	p.D2325_Q2327delinsN*K	ENST00000219905	NM_001164273.1	2325	GACTACCag/AACTAAAag																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649951	88649951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	16	687	0	ENST00000372037.3:c.200G>A	p.Cys67Tyr	p.C67Y	ENST00000372037	NM_004329.2	67	tGt/tAt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287465	33287480	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTATGCTGGAGGGG	ATCTATGCTGGAGGGG	-			P-0044178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	22	580	0	ENST00000374542.5:c.1617_1632del	p.Pro540LeufsTer11	p.P540Lfs*11	ENST00000374542	NM_001141970.1	539	gcCCCCTCCAGCATAGAT/gc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575047	64575065	+	protein_altering_variant	In_Frame_Del	DEL	GCGAGTCGGTGTGCAGGTC	GCGAGTCGGTGTGCAGGTC	T			P-0044178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	21	593	0	ENST00000337652.1:c.757_775delinsA	p.Asp253_Leu259delinsMet	p.D253_L259delinsM	ENST00000337652	NM_130803.2	253	GACCTGCACACCGACTCGCtg/Atg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0044735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	43	564	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0044735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	29	474	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0044650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	45	369	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72163690	72163690	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	86	251	0	ENST00000357731.5:c.667+1G>A		p.X223_splice	ENST00000357731	NM_173808.2	223																																																																																
CSDE1	7812	MSKCC	GRCh37	1	115267931	115267931	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	89	338	0	ENST00000438362.2:c.1802G>T	p.Ser601Ile	p.S601I	ENST00000438362	NM_001242891.1	601	aGc/aTc																																																																															
ATM	472	MSKCC	GRCh37	11	108199881	108199881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	89	130	0	ENST00000278616.4:c.7223C>T	p.Ser2408Leu	p.S2408L	ENST00000278616	NM_000051.3	2408	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	178	269	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641744	23641744	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	51	205	0	ENST00000261584.4:c.1731T>G	p.Asn577Lys	p.N577K	ENST00000261584	NM_024675.3	577	aaT/aaG																																																																															
CDH1	999	MSKCC	GRCh37	16	68845733	68845733	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	120	335	0	ENST00000261769.5:c.979A>G	p.Ser327Gly	p.S327G	ENST00000261769	NM_004360.3	327	Agt/Ggt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52729229	52729229	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	229	454	0	ENST00000322088.6:c.1765G>T	p.Ala589Ser	p.A589S	ENST00000322088	NM_014225.5	589	Gcc/Tcc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266713	198266713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776846119		P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	158	349	0	ENST00000335508.6:c.2219G>A	p.Gly740Glu	p.G740E	ENST00000335508	NM_012433.2	740	gGa/gAa																																																																															
ERG	2078	MSKCC	GRCh37	21	39755470	39755470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	206	397	2	ENST00000288319.7:c.1295C>A	p.Ala432Glu	p.A432E	ENST00000288319	NM_182918.3	432	gCg/gAg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946428	2946428	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	506	656	0	ENST00000396946.4:c.3309C>A	p.Cys1103Ter	p.C1103*	ENST00000396946	NM_032415.4	1103	tgC/tgA																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249873	110249873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	222	580	0	ENST00000374672.4:c.802G>T	p.Gly268Cys	p.G268C	ENST00000374672	NM_004235.4	268	Ggc/Tgc																																																																															
BTK	695	MSKCC	GRCh37	X	100613316	100613316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	174	454	0	ENST00000308731.7:c.1084C>A	p.His362Asn	p.H362N	ENST00000308731	NM_000061.2	362	Cat/Aat																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123480557	123480557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	133	445	0	ENST00000371139.4:c.65C>A	p.Ala22Asp	p.A22D	ENST00000371139	NM_001114937.2	22	gCc/gAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157529020	157529027	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	TTATGACA	TTATGACA	-			P-0044414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	22	330	0	ENST00000346085.5:c.6746_*3del		p.*2249*	ENST00000346085	NM_020732.3	2249																																																																																
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0044432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	34	559	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056437	26056437	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	26	338	0	ENST00000343677.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000343677	NM_005319.3	74	Gag/Cag																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871782	35871782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	54	595	0	ENST00000216797.5:c.724G>A	p.Asp242Asn	p.D242N	ENST00000216797	NM_020529.2	242	Gat/Aat																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67201882	67201882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	62	832	0	ENST00000312629.5:c.1082G>A	p.Arg361His	p.R361H	ENST00000312629	NM_003952.2	361	cGc/cAc																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23539027	23539028	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	117	679	0	ENST00000380871.4:c.411dup	p.Glu138ArgfsTer16	p.E138Rfs*16	ENST00000380871	NM_006167.3	137	-/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0044459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	58	351	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0044459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	76	727	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913288		P-0044459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	31	372	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0044470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	255	452	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0044470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	347	1194	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435386	56435386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	207	1064	3	ENST00000407977.2:c.1751G>A	p.Arg584Gln	p.R584Q	ENST00000407977		584	cGg/cAg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981298	201981298	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	90	871	0	ENST00000359651.3:c.377G>C	p.Arg126Pro	p.R126P	ENST00000359651		126	cGa/cCa																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804367	46804367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	175	609	0	ENST00000290295.7:c.640C>T	p.Arg214Cys	p.R214C	ENST00000290295	NM_006361.5	214	Cgt/Tgt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492853	56492853	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	103	461	0	ENST00000407977.2:c.86del	p.Gly29AspfsTer22	p.G29Dfs*22	ENST00000407977		29	gGa/ga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8633382	8633382	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	136	513	0	ENST00000356435.5:c.287A>T	p.Tyr96Phe	p.Y96F	ENST00000356435		96	tAt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	102	434	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624293	89624293	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	147	579	0	ENST00000371953.3:c.67T>G	p.Leu23Val	p.L23V	ENST00000371953	NM_000314.4	23	Tta/Gta																																																																															
APC	324	MSKCC	GRCh37	5	112154935	112154935	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	217	734	0	ENST00000257430.4:c.1206delT	p.Glu403LysfsTer51	p.E403Kfs*51	ENST00000257430	NM_000038.5	402	cgT/cg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920413	114920413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	278	597	1	ENST00000543371.1:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000543371	NM_001198531.1	452	Ggg/Agg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690835	89690835	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	89	286	0	ENST00000371953.3:c.242T>G	p.Phe81Cys	p.F81C	ENST00000371953	NM_000314.4	81	tTt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577557	7577557	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	259	751	0	ENST00000269305.4:c.724T>A	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	Tgc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0044492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	221	484	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457389	67457389	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	242	1027	0	ENST00000327367.4:c.363C>A	p.Cys121Ter	p.C121*	ENST00000327367	NM_005902.3	121	tgC/tgA																																																																															
CBFB	865	MSKCC	GRCh37	16	67116155	67116155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	183	617	0	ENST00000412916.2:c.439C>T	p.Arg147Trp	p.R147W	ENST00000412916		147	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0044492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	258	851	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246167	41246167	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	195	438	0	ENST00000357654.3:c.1381T>C	p.Phe461Leu	p.F461L	ENST00000357654	NM_007294.3	461	Ttt/Ctt																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0044492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	245	372	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578219	7578220	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	303	545	0	ENST00000269305.4:c.629dup	p.Asn210LysfsTer6	p.N210Kfs*6	ENST00000269305	NM_001126112.2	210	aac/aaAc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7990703	7990703	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	167	574	0	ENST00000319144.4:c.58G>T	p.Asp20Tyr	p.D20Y	ENST00000319144	NM_001139.2	20	Gac/Tac																																																																															
INSR	3643	MSKCC	GRCh37	19	7267785	7267785	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	118	515	0	ENST00000302850.5:c.223G>C	p.Asp75His	p.D75H	ENST00000302850	NM_000208.2	75	Gac/Cac																																																																															
BCL6	604	MSKCC	GRCh37	3	187447106	187447106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	129	536	0	ENST00000232014.4:c.1087C>A	p.Pro363Thr	p.P363T	ENST00000232014	NM_001130845.1	363	Cca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112174182	112174182	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0044543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	50	255	0	ENST00000257430.4:c.2891T>A	p.Leu964Ter	p.L964*	ENST00000257430	NM_000038.5	964	tTa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112176021	112176021	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	29	228	1	ENST00000257430.4:c.4731delA	p.Glu1577AspfsTer73	p.E1577Dfs*73	ENST00000257430	NM_000038.5	1577	gAa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0044214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	126	360	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0044214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	96	630	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578242	7578242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	77	658	1	ENST00000269305.4:c.607G>T	p.Val203Leu	p.V203L	ENST00000269305	NM_001126112.2	203	Gtg/Ttg																																																																															
ATRX	546	MSKCC	GRCh37	X	76940008	76940008	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	60	560	0	ENST00000373344.5:c.740A>G	p.Asn247Ser	p.N247S	ENST00000373344	NM_000489.3	247	aAc/aGc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175996825	175996825	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0044214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	86	392	0	ENST00000367669.3:c.1613-1G>T		p.X538_splice	ENST00000367669	NM_022457.5	538																																																																																
HOXB13	10481	MSKCC	GRCh37	17	46805676	46805676	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1338	96	735	0	ENST00000290295.7:c.280C>G	p.Arg94Gly	p.R94G	ENST00000290295	NM_006361.5	94	Cgg/Ggg																																																																															
ALK	238	MSKCC	GRCh37	2	30143080	30143080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	95	782	0	ENST00000389048.3:c.446C>T	p.Ala149Val	p.A149V	ENST00000389048	NM_004304.4	149	gCg/gTg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502626	149502626	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	57	358	0	ENST00000261799.4:c.2162C>A	p.Pro721His	p.P721H	ENST00000261799	NM_002609.3	721	cCc/cAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	39	457	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	21	485	0	ENST00000206249.3:c.1609T>G	p.Tyr537Asp	p.Y537D	ENST00000206249	NM_000125.3	537	Tat/Gat																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742934	17742934	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	29	494	0	ENST00000250003.3:c.842G>T	p.Arg281Leu	p.R281L	ENST00000250003	NM_002478.4	281	cGc/cTc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573118	64573119	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	17	291	0	ENST00000337652.1:c.1188_1189insT	p.Glu397Ter	p.E397*	ENST00000337652	NM_130803.2	396	-/T																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26022352	26022352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	36	464	0	ENST00000435504.4:c.305G>A	p.Ser102Asn	p.S102N	ENST00000435504		102	aGt/aAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			159	149	246	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	135	665	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			348	95	339	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	232	644	9	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			416	38	506	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			396	158	402	6	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			285	93	430	1	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			497	140	692	4	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			338	132	300	13	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	339492	339492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	83	754	1	ENST00000262320.3:c.2410G>A	p.Ala804Thr	p.A804T	ENST00000262320	NM_003502.3	804	Gct/Act																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099080	157099080	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			201	28	116	0	ENST00000346085.5:c.17G>C	p.Gly6Ala	p.G6A	ENST00000346085	NM_020732.3	6	gGc/gCc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306550	41306550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			391	104	553	0	ENST00000373198.4:c.1109C>T	p.Thr370Met	p.T370M	ENST00000373198	NM_133170.3	370	aCg/aTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			421	115	612	0	ENST00000261937.6:c.89dupC	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519505	137519506	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs780346130		P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			255	128	327	6	ENST00000367739.4:c.1132_1133del	p.Ser378PhefsTer6	p.S378Ffs*6	ENST00000367739	NM_000416.2	378	AGt/t																																																																															
RARA	5914	MSKCC	GRCh37	17	38512402	38512402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	111	600	5	ENST00000254066.5:c.1319delC	p.Pro440ArgfsTer203	p.P440Rfs*203	ENST00000254066	NM_000964.3	438	gCc/gc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337684	73337684	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			207	79	259	3	ENST00000377767.4:c.2032delA	p.Ile678PhefsTer59	p.I678Ffs*59	ENST00000377767	NM_014953.3	678	Att/tt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56348561	56348561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			249	85	320	0	ENST00000348428.3:c.374del	p.Pro125GlnfsTer3	p.P125Qfs*3	ENST00000348428	NM_006785.3	123	agC/ag																																																																															
DIS3	22894	MSKCC	GRCh37	13	73349353	73349353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			236	83	271	0	ENST00000377767.4:c.983G>A	p.Arg328Gln	p.R328Q	ENST00000377767	NM_014953.3	328	cGa/cAa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11319442	11319442	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769877976		P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			509	149	591	3	ENST00000361445.4:c.25G>A	p.Ala9Thr	p.A9T	ENST00000361445	NM_004958.3	9	Gcc/Acc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			524	174	491	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			851	130	775	4	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2096133	2096133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			417	132	609	0	ENST00000219066.1:c.374delC	p.Pro125GlnfsTer12	p.P125Qfs*12	ENST00000219066	NM_002528.5	125	cCa/ca																																																																															
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			475	155	648	5	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			533	169	818	5	ENST00000294008.3:c.1406delC	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			476	129	635	0	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845397	151845397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			511	353	613	0	ENST00000262189.6:c.13615G>A	p.Val4539Met	p.V4539M	ENST00000262189	NM_170606.2	4539	Gtg/Atg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			286	300	418	16	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38631981	38631981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			441	128	506	0	ENST00000299084.4:c.471delT	p.Gln158SerfsTer16	p.Q158Sfs*16	ENST00000299084	NM_152594.2	156	cTt/ct																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226716	2226716	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	125	503	0	ENST00000398665.3:c.4196C>A	p.Pro1399His	p.P1399H	ENST00000398665	NM_032482.2	1399	cCc/cAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022358	31022358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			256	82	372	0	ENST00000375687.4:c.1843G>A	p.Ala615Thr	p.A615T	ENST00000375687	NM_015338.5	615	Gca/Aca																																																																															
KDR	3791	MSKCC	GRCh37	4	55964922	55964922	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199982402		P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			412	135	396	0	ENST00000263923.4:c.2315C>T	p.Ala772Val	p.A772V	ENST00000263923	NM_002253.2	772	gCg/gTg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202603	67202603	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			494	123	574	0	ENST00000312629.5:c.1412A>T	p.Lys471Met	p.K471M	ENST00000312629	NM_003952.2	471	aAg/aTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245726	46245726	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	92	490	0	ENST00000334344.6:c.3820G>T	p.Gly1274Ter	p.G1274*	ENST00000334344	NM_152641.2	1274	Gga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857995	9857995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			476	118	553	0	ENST00000330684.3:c.3406G>A	p.Val1136Ile	p.V1136I	ENST00000330684	NM_001134407.1	1136	Gtt/Att																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89354959	89354959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			502	186	607	2	ENST00000301030.4:c.721G>A	p.Ala241Thr	p.A241T	ENST00000301030	NM_001256183.1	241	Gct/Act																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15976751	15976751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	96	480	0	ENST00000268712.3:c.3803C>T	p.Pro1268Leu	p.P1268L	ENST00000268712	NM_006311.3	1268	cCg/cTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439961	56439962	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			635	183	730	0	ENST00000407977.2:c.630dup	p.Val211CysfsTer48	p.V211Cfs*48	ENST00000407977		210	-/T																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622325	1622325	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	126	680	0	ENST00000344749.5:c.639del	p.Phe214SerfsTer70	p.F214Sfs*70	ENST00000344749	NM_001136139.2	213	ccC/cc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18277996	18277996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	153	622	1	ENST00000222254.8:c.1616G>A	p.Arg539His	p.R539H	ENST00000222254	NM_005027.3	539	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214660	36214660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			357	119	596	1	ENST00000222270.7:c.3086C>T	p.Pro1029Leu	p.P1029L	ENST00000222270	NM_014727.1	1029	cCc/cTc																																																																															
CIC	23152	MSKCC	GRCh37	19	42797393	42797393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			497	156	750	0	ENST00000575354.2:c.3755C>A	p.Pro1252His	p.P1252H	ENST00000575354	NM_015125.3	1252	cCt/cAt																																																																															
BBC3	27113	MSKCC	GRCh37	19	47735829	47735829	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			619	128	631	0	ENST00000449228.1:c.31T>C	p.Cys11Arg	p.C11R	ENST00000449228	NM_001127240.2	11	Tgt/Cgt																																																																															
ATR	545	MSKCC	GRCh37	3	142180827	142180827	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			316	80	379	0	ENST00000350721.4:c.7147A>G	p.Thr2383Ala	p.T2383A	ENST00000350721	NM_001184.3	2383	Act/Gct																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542676	187542676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			325	108	399	0	ENST00000441802.2:c.5064G>A	p.Met1688Ile	p.M1688I	ENST00000441802	NM_005245.3	1688	atG/atA																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755737	57755738	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	152	584	1	ENST00000274289.3:c.49dup	p.Met17AsnfsTer89	p.M17Nfs*89	ENST00000274289	NM_006622.3	17	atg/aAtg																																																																															
TEK	7010	MSKCC	GRCh37	9	27168504	27168504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			359	100	418	0	ENST00000380036.4:c.376C>T	p.Pro126Ser	p.P126S	ENST00000380036	NM_000459.3	126	Cca/Tca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400056	139400056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			479	195	780	1	ENST00000277541.6:c.4292G>A	p.Ser1431Asn	p.S1431N	ENST00000277541	NM_017617.3	1431	aGc/aAc																																																																															
BTK	695	MSKCC	GRCh37	X	100629610	100629610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			299	79	402	0	ENST00000308731.7:c.154A>G	p.Lys52Glu	p.K52E	ENST00000308731	NM_000061.2	52	Aag/Gag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427251	49427253	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			336	109	659	2	ENST00000301067.7:c.11235_11237del	p.Gln3745del	p.Q3745del	ENST00000301067	NM_003482.3	3745	caGCAc/cac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435845	56435845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			421	35	564	1	ENST00000407977.2:c.1292G>A	p.Cys431Tyr	p.C431Y	ENST00000407977		431	tGc/tAc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49935598	49935598	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			542	39	723	0	ENST00000296474.3:c.1766T>C	p.Leu589Pro	p.L589P	ENST00000296474	NM_002447.2	589	cTg/cCg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31511140	31511140	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			602	49	527	0	ENST00000344624.3:c.1432+2T>C		p.X478_splice	ENST00000344624		478																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0044215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	29	446	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0044215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	109	746	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577601	7577601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	9	608	0	ENST00000269305.4:c.680C>T	p.Ser227Phe	p.S227F	ENST00000269305	NM_001126112.2	227	tCt/tTt																																																																															
AKT2	208	MSKCC	GRCh37	19	40743980	40743980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	44	623	0	ENST00000392038.2:c.727C>T	p.Arg243Trp	p.R243W	ENST00000392038	NM_001626.4	243	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255170	16255170	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	155	444	0	ENST00000375759.3:c.2439del	p.Val814TrpfsTer44	p.V814Wfs*44	ENST00000375759	NM_015001.2	812	gAa/ga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	156	531	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
JUN	3725	MSKCC	GRCh37	1	59248049	59248052	+	frameshift_variant	Frame_Shift_Del	DEL	CTGT	CTGT	-			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	115	450	0	ENST00000371222.2:c.691_694delACAG	p.Thr231CysfsTer29	p.T231Cfs*29	ENST00000371222	NM_002228.3	231	ACAGtg/tg																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551935	150551946	+	inframe_deletion	In_Frame_Del	DEL	GCCGGCCCCCAA	GCCGGCCCCCAA	-			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	125	426	0	ENST00000369026.2:c.61_72del	p.Leu21_Gly24del	p.L21_G24del	ENST00000369026	NM_021960.4	21	TTGGGGGCCGGC/-																																																																															
PGR	5241	MSKCC	GRCh37	11	100999143	100999143	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	234	747	0	ENST00000325455.5:c.659A>G	p.Glu220Gly	p.E220G	ENST00000325455	NM_001202474.3	220	gAg/gGg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	165	430	8	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894365		P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	166	395	1	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	248	858	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863467	57863467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	185	562	0	ENST00000228682.2:c.1562G>A	p.Ser521Asn	p.S521N	ENST00000228682	NM_005269.2	521	aGc/aAc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	198	735	15	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
POLE	5426	MSKCC	GRCh37	12	133218430	133218431	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	167	641	0	ENST00000320574.5:c.5180_5181delTG	p.Val1727GlyfsTer57	p.V1727Gfs*57	ENST00000320574	NM_006231.2	1727	gTG/g																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422039	81422040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	108	379	0	ENST00000298171.2:c.17dup	p.Leu6PhefsTer56	p.L6Ffs*56	ENST00000298171	NM_000369.2	5	-/T																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43705410	43705410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	241	875	1	ENST00000382044.4:c.5212G>A	p.Ala1738Thr	p.A1738T	ENST00000382044	NM_001141980.1	1738	Gca/Aca																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727565	66727565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	152	387	0	ENST00000307102.5:c.281T>C	p.Met94Thr	p.M94T	ENST00000307102	NM_002755.3	94	aTg/aCg																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	158	528	3	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465477	99465477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	157	516	0	ENST00000268035.6:c.2302C>T	p.Pro768Ser	p.P768S	ENST00000268035	NM_000875.3	768	Ccg/Tcg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	188	615	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	487	705	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740789	58740789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	203	600	0	ENST00000305921.3:c.1694G>A	p.Ser565Asn	p.S565N	ENST00000305921	NM_003620.3	565	aGt/aAt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	180	535	0	ENST00000245479.2:c.916delG	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244358	5244358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	306	788	3	ENST00000357368.4:c.1124C>T	p.Pro375Leu	p.P375L	ENST00000357368	NM_002850.3	375	cCg/cTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262139	10262139	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	184	739	1	ENST00000340748.4:c.2152delA	p.Met718CysfsTer59	p.M718Cfs*59	ENST00000340748		718	Atg/tg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945988	17945988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	308	876	0	ENST00000458235.1:c.1951C>T	p.Arg651Trp	p.R651W	ENST00000458235	NM_000215.3	651	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	288	907	6	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
CIC	23152	MSKCC	GRCh37	19	42797411	42797411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	207	877	0	ENST00000575354.2:c.3773G>A	p.Ser1258Asn	p.S1258N	ENST00000575354	NM_015125.3	1258	aGc/aAc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660306	227660307	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	155	556	0	ENST00000305123.5:c.3148dup	p.Ala1050GlyfsTer31	p.A1050Gfs*31	ENST00000305123	NM_005544.2	1050	gca/gGca																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022485	31022486	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	100	403	0	ENST00000375687.4:c.1973dup	p.Gly659ArgfsTer9	p.G659Rfs*9	ENST00000375687	NM_015338.5	657	gag/gaGg																																																																															
SRC	6714	MSKCC	GRCh37	20	36012725	36012725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1432190943		P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	61	92	0	ENST00000358208.4:c.169G>A	p.Ala57Thr	p.A57T	ENST00000358208		57	Gcg/Acg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713673	30713673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	172	502	0	ENST00000359013.4:c.1073T>C	p.Leu358Pro	p.L358P	ENST00000359013	NM_001024847.2	358	cTa/cCa																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934243	49934243	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1407832113		P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	234	783	3	ENST00000296474.3:c.2264del	p.Gly755ValfsTer19	p.G755Vfs*19	ENST00000296474	NM_002447.2	755	gGt/gt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52582242	52582242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	85	227	0	ENST00000394830.3:c.4586G>A	p.Arg1529His	p.R1529H	ENST00000394830	NM_018313.4	1529	cGc/cAc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247426	71247426	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200643313		P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	177	555	0	ENST00000318789.4:c.107G>A	p.Arg36Gln	p.R36Q	ENST00000318789	NM_032682.5	36	cGg/cAg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119634948	119634948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	112	303	0	ENST00000316626.5:c.551C>T	p.Pro184Leu	p.P184L	ENST00000316626		184	cCg/cTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55964971	55964971	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	22	263	0	ENST00000263923.4:c.2267-1G>T		p.X756_splice	ENST00000263923	NM_002253.2	756																																																																																
HLA-B	3106	MSKCC	GRCh37	6	31323147	31323147	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	46	712	0	ENST00000412585.2:c.842A>G	p.Tyr281Cys	p.Y281C	ENST00000412585	NM_005514.6	281	tAc/tGc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815698	32815698	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	442	776	1	ENST00000354258.4:c.1918C>T	p.Gln640Ter	p.Q640*	ENST00000354258	NM_000593.5	640	Cag/Tag																																																																															
SMO	6608	MSKCC	GRCh37	7	128845228	128845228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	38	509	0	ENST00000249373.3:c.722C>T	p.Thr241Met	p.T241M	ENST00000249373	NM_005631.4	241	aCg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	249	447	9	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929498	44929498	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	215	558	0	ENST00000377967.4:c.2598del	p.Met866IlefsTer32	p.M866Ifs*32	ENST00000377967	NM_021140.2	866	atG/at																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045483	47045483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	214	632	1	ENST00000329236.7:c.2216G>A	p.Arg739His	p.R739H	ENST00000329236	NM_001204466.1	739	cGt/cAt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412248	63412248	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	243	935	0	ENST00000330258.3:c.919del	p.Asp307ThrfsTer3	p.D307Tfs*3	ENST00000330258	NM_152424.3	307	Gac/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578259	7578259	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	1017	729	0	ENST00000269305.4:c.590T>A	p.Val197Glu	p.V197E	ENST00000269305	NM_001126112.2	197	gTg/gAg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43720258	43720258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	423	588	0	ENST00000382044.4:c.3784G>A	p.Val1262Met	p.V1262M	ENST00000382044	NM_001141980.1	1262	Gtg/Atg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79965971	79965971	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	400	576	0	ENST00000265081.6:c.635A>G	p.Asn212Ser	p.N212S	ENST00000265081	NM_002439.4	212	aAt/aGt																																																																															
MET	4233	MSKCC	GRCh37	7	116371753	116371753	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201154533		P-0044256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	337	364	1	ENST00000397752.3:c.1232C>T	p.Ala411Val	p.A411V	ENST00000397752	NM_000245.2	411	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	202	277	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29587511	29587511	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	71	283	0	ENST00000358273.4:c.4557delG	p.Gln1520SerfsTer54	p.Q1520Sfs*54	ENST00000358273	NM_001042492.2	1519	Ggg/gg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28601234	28601234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	231	268	0	ENST00000241453.7:c.2198C>T	p.Pro733Leu	p.P733L	ENST00000241453	NM_004119.2	733	cCa/cTa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198281609	198281609	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	292	311	1	ENST00000335508.6:c.522A>T	p.Glu174Asp	p.E174D	ENST00000335508	NM_012433.2	174	gaA/gaT																																																																															
NBN	4683	MSKCC	GRCh37	8	90982787	90982787	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0044253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	110	164	0	ENST00000265433.3:c.703-2A>T		p.X235_splice	ENST00000265433	NM_002485.4	235																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8517949	8517949	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	13	296	0	ENST00000356435.5:c.1442A>T	p.Asn481Ile	p.N481I	ENST00000356435		481	aAc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579480	7579480	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009679-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	411	578	0	ENST00000269305.4:c.207del	p.Ala70LeufsTer53	p.A70Lfs*53	ENST00000269305	NM_001126112.2	69	gcT/gc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	40	328	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574000	7574000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	1005	822	0	ENST00000269305.4:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000269305	NM_001126112.2	343	Gag/Tag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011144	12011144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	202	218	0	ENST00000353533.5:c.551C>T	p.Ser184Leu	p.S184L	ENST00000353533	NM_003010.3	184	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	234	364	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221297	36221297	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	1032	941	1	ENST00000222270.7:c.5131G>C	p.Glu1711Gln	p.E1711Q	ENST00000222270	NM_014727.1	1711	Gag/Cag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482345	56482345	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	224	601	0	ENST00000267101.3:c.893A>T	p.Gln298Leu	p.Q298L	ENST00000267101	NM_001982.3	298	cAa/cTa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95596451	95596451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	124	266	0	ENST00000343455.3:c.517G>T	p.Val173Leu	p.V173L	ENST00000343455	NM_177438.2	173	Gtg/Ttg																																																																															
CIC	23152	MSKCC	GRCh37	19	42797870	42797870	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	934	934	0	ENST00000575354.2:c.3922G>C	p.Glu1308Gln	p.E1308Q	ENST00000575354	NM_015125.3	1308	Gag/Cag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248540	212248540	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	301	536	0	ENST00000342788.4:c.3727T>C	p.Trp1243Arg	p.W1243R	ENST00000342788	NM_005235.2	1243	Tgg/Cgg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164790	36164790	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	1068	1008	0	ENST00000300305.3:c.1085C>G	p.Ser362Trp	p.S362W	ENST00000300305		362	tCg/tGg																																																																															
BCL6	604	MSKCC	GRCh37	3	187444650	187444650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	247	445	0	ENST00000232014.4:c.1577G>T	p.Arg526Leu	p.R526L	ENST00000232014	NM_001130845.1	526	cGc/cTc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957455	1957455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	313	585	0	ENST00000382891.5:c.2554G>T	p.Ala852Ser	p.A852S	ENST00000382891	NM_133335.3	852	Gcc/Tcc																																																																															
KDR	3791	MSKCC	GRCh37	4	55968096	55968096	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	196	387	0	ENST00000263923.4:c.2234G>C	p.Cys745Ser	p.C745S	ENST00000263923	NM_002253.2	745	tGt/tCt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508097	106508097	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	240	241	0	ENST00000359195.3:c.91A>T	p.Ser31Cys	p.S31C	ENST00000359195	NM_002649.2	31	Agc/Tgc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393635	139393635	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	1034	899	0	ENST00000277541.6:c.6011G>C	p.Arg2004Pro	p.R2004P	ENST00000277541	NM_017617.3	2004	cGc/cCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	93	369	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098803	178098803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	118	559	0	ENST00000397062.3:c.242G>A	p.Gly81Asp	p.G81D	ENST00000397062	NM_006164.4	81	gGt/gAt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0044116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	13	246	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028638	12028638	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	82	344	0	ENST00000353533.5:c.841C>T	p.Arg281Ter	p.R281*	ENST00000353533	NM_003010.3	281	Cga/Tga																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098806	178098806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	31	547	0	ENST00000397062.3:c.239C>T	p.Thr80Ile	p.T80I	ENST00000397062	NM_006164.4	80	aCa/aTa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591977	48591977	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0044116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	67	249	0	ENST00000342988.3:c.1139+1G>A		p.X380_splice	ENST00000342988	NM_005359.5	380																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11132621	11132621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	215	847	0	ENST00000344626.4:c.2837C>T	p.Pro946Leu	p.P946L	ENST00000344626	NM_003072.3	946	cCc/cTc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098808	178098808	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	120	555	0	ENST00000397062.3:c.237G>C	p.Glu79Asp	p.E79D	ENST00000397062	NM_006164.4	79	gaG/gaC																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651388	52651388	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	110	394	0	ENST00000394830.3:c.1708A>C	p.Ile570Leu	p.I570L	ENST00000394830	NM_018313.4	570	Ata/Cta																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271490	26271491	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0044116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	46	424	0	ENST00000305910.3:c.122_123del	p.Arg41LeufsTer19	p.R41Lfs*19	ENST00000305910	NM_003534.2	41	cGC/c																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64288346	64288346	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	10	209	0	ENST00000370651.3:c.110T>G	p.Leu37Arg	p.L37R	ENST00000370651	NM_003463.4	37	cTt/cGt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038564	47038564	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0044116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	144	368	0	ENST00000329236.7:c.493+2T>C		p.X165_splice	ENST00000329236	NM_001204466.1	165																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	27	437	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577554	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	TGCAG	TGCAG	-			P-0044117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	54	704	0	ENST00000269305.4:c.723_727del	p.Cys242GlyfsTer20	p.C242Gfs*20	ENST00000269305	NM_001126112.2	241	tcCTGCAtg/tctg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581162	48581186	+	frameshift_variant	Frame_Shift_Del	DEL	ATGATGGTGAAGGATGAATATGTGC	ATGATGGTGAAGGATGAATATGTGC	-			P-0044117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	21	307	0	ENST00000342988.3:c.470_494del	p.Met157ThrfsTer37	p.M157Tfs*37	ENST00000342988	NM_005359.5	156	ATGATGGTGAAGGATGAATATGTGCat/at																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522658	67522670	+	frameshift_variant	Frame_Shift_Del	DEL	AAATTGGCTGGTT	AAATTGGCTGGTT	-			P-0044117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	16	323	0	ENST00000274335.5:c.159_171del	p.Ile53MetfsTer18	p.I53Mfs*18	ENST00000274335		52	gAAATTGGCTGGTTa/ga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504270	8504270	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	22	485	0	ENST00000356435.5:c.1813A>C	p.Met605Leu	p.M605L	ENST00000356435		605	Atg/Ctg																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652305	48652305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	48	578	0	ENST00000376670.3:c.976G>A	p.Ala326Thr	p.A326T	ENST00000376670	NM_002049.3	326	Gca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	87	462	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0044124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	107	360	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
APC	324	MSKCC	GRCh37	5	112137036	112137036	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	147	466	0	ENST00000257430.4:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000257430	NM_000038.5	264	Caa/Taa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627976	37627976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	119	543	3	ENST00000447079.4:c.1891C>T	p.Pro631Ser	p.P631S	ENST00000447079	NM_015083.1	631	Ccc/Tcc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120372	70120372	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	779	1363	0	ENST00000245479.2:c.1376del	p.Gly459AlafsTer11	p.G459Afs*11	ENST00000245479	NM_000346.3	458	caG/ca																																																																															
CASP8	841	MSKCC	GRCh37	2	202149911	202149911	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	257	708	1	ENST00000358485.4:c.1352A>T	p.Tyr451Phe	p.Y451F	ENST00000358485	NM_001080125.1	451	tAt/tTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162062	47162062	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	66	401	0	ENST00000409792.3:c.4064A>T	p.Lys1355Ile	p.K1355I	ENST00000409792	NM_014159.6	1355	aAa/aTa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155209	55155209	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	217	546	0	ENST00000257290.5:c.2808G>T	p.Glu936Asp	p.E936D	ENST00000257290	NM_006206.4	936	gaG/gaT																																																																															
APC	324	MSKCC	GRCh37	5	112175432	112175433	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TA			P-0044124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	81	336	1	ENST00000257430.4:c.4141_4142delinsTA	p.Pro1381Ter	p.P1381*	ENST00000257430	NM_000038.5	1381	CCa/TAa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061223	38061228	+	inframe_deletion	In_Frame_Del	DEL	TCTCGA	TCTCGA	-			P-0044055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	45	462	0	ENST00000250448.2:c.761_766del	p.Phe254_Asn256delinsTyr	p.F254_N256delinsY	ENST00000250448	NM_004496.3	254	tTCGAGAac/tac																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933782	49933782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	15	577	0	ENST00000296474.3:c.2495G>A	p.Arg832Gln	p.R832Q	ENST00000296474	NM_002447.2	832	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0012895-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			260	60	185	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012895-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			487	91	393	1	ENST00000250448.2:c.781C>A	p.Arg261Ser	p.R261S	ENST00000250448	NM_004496.3	261	Cgc/Agc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911445	134911445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012895-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			520	49	422	0	ENST00000398015.3:c.1910G>A	p.Arg637His	p.R637H	ENST00000398015	NM_004441.4	637	cGt/cAt																																																																															
CDH1	999	MSKCC	GRCh37	16	68867235	68867236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012895-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			354	106	462	0	ENST00000261769.5:c.2483dup	p.Asp828GlufsTer7	p.D828Efs*7	ENST00000261769	NM_004360.3	828	gat/gAat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033719-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	16	275	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0033719-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	20	334	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033719-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			607	36	801	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0033719-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	57	432	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	39	292	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578240	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0044019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	246	551	2	ENST00000269305.4:c.608_609dup	p.Glu204TrpfsTer44	p.E204Wfs*44	ENST00000269305	NM_001126112.2	203	-/TG																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0044019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	84	279	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260064	19260064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	458	701	1	ENST00000162023.5:c.229G>A	p.Glu77Lys	p.E77K	ENST00000162023		77	Gag/Aag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066687	94066687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	154	372	1	ENST00000369303.4:c.1072G>T	p.Gly358Trp	p.G358W	ENST00000369303	NM_004440.3	358	Ggg/Tgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539725	187539725	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	55	299	0	ENST00000441802.2:c.8015T>G	p.Phe2672Cys	p.F2672C	ENST00000441802	NM_005245.3	2672	tTt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112162919	112162919	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0044019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	18	305	0	ENST00000257430.4:c.1523T>A	p.Leu508Ter	p.L508*	ENST00000257430	NM_000038.5	508	tTg/tAg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577290	64577291	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0044031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	450	714	0	ENST00000337652.1:c.291_292del	p.Ile97MetfsTer19	p.I97Mfs*19	ENST00000337652	NM_130803.2	97	atCCga/atga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248356	212248356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	73	208	0	ENST00000342788.4:c.3911G>A	p.Arg1304Gln	p.R1304Q	ENST00000342788	NM_005235.2	1304	cGg/cAg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52702661	52702662	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TC	TC	-			P-0044031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	96	207	0	ENST00000394830.3:c.237-1_237del		p.X79_splice	ENST00000394830	NM_018313.4	79																																																																																
FGFR1	2260	MSKCC	GRCh37	8	38287355	38287355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	68	648	0	ENST00000425967.3:c.302G>A	p.Arg101Gln	p.R101Q	ENST00000425967	NM_001174067.1	101	cGg/cAg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135798741	135798741	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0044031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	116	174	0	ENST00000298552.3:c.502A>T	p.Lys168Ter	p.K168*	ENST00000298552	NM_001162426.1	168	Aaa/Taa																																																																															
CUL3	8452	MSKCC	GRCh37	2	225339003	225339003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	27	494	1	ENST00000264414.4:c.2266C>T	p.Arg756Ter	p.R756*	ENST00000264414	NM_003590.4	756	Cga/Tga																																																																															
ETV6	2120	MSKCC	GRCh37	12	12006417	12006417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	52	626	0	ENST00000396373.4:c.385C>T	p.Leu129Phe	p.L129F	ENST00000396373	NM_001987.4	129	Ctt/Ttt																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868332	45868332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	50	1107	0	ENST00000391945.4:c.445G>A	p.Asp149Asn	p.D149N	ENST00000391945	NM_000400.3	149	Gac/Aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0029787-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1335	878	714	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0029787-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			74	981	489	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190345	32190345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029787-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			525	233	746	0	ENST00000375023.3:c.394N>T	p.Arg132Cys	p.R132C	ENST00000375023	NM_004557.3	132	Cgc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249091	55249091	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029787-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1624	661	720	0	ENST00000275493.2:c.2389T>G	p.Cys797Gly	p.C797G	ENST00000275493	NM_005228.3	797	Tgc/Ggc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445088	89445088	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029787-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			299	43	401	0	ENST00000336596.2:c.1408T>G	p.Tyr470Asp	p.Y470D	ENST00000336596	NM_005233.5	470	Tac/Gac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014438-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			53	23	436	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0014438-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			204	248	904	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793433	18793433	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202143029		P-0014438-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			41	21	581	0	ENST00000266497.5:c.4130G>A	p.Arg1377His	p.R1377H	ENST00000266497		1377	cGt/cAt																																																																															
IGF2	3481	MSKCC	GRCh37	11	2161406	2161406	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014438-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	451	696	0	ENST00000434045.2:c.121G>C	p.Gly41Arg	p.G41R	ENST00000434045	NM_001127598.1	41	Ggc/Cgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575204	48575207	+	frameshift_variant	Frame_Shift_Del	DEL	ACGA	ACGA	-			P-0014438-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			31	12	355	0	ENST00000342988.3:c.402_405del	p.Arg135LeufsTer11	p.R135Lfs*11	ENST00000342988	NM_005359.5	133	tACGAa/ta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	110	370	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	222	805	1	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48586262	48586262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	111	382	0	ENST00000342988.3:c.931C>T	p.Gln311Ter	p.Q311*	ENST00000342988	NM_005359.5	311	Cag/Tag																																																																															
DIS3	22894	MSKCC	GRCh37	13	73351564	73351564	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	22	203	1	ENST00000377767.4:c.648A>C	p.Glu216Asp	p.E216D	ENST00000377767	NM_014953.3	216	gaA/gaC																																																																															
CASP8	841	MSKCC	GRCh37	2	202149998	202149998	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	209	602	0	ENST00000358485.4:c.1439A>T	p.Tyr480Phe	p.Y480F	ENST00000358485	NM_001080125.1	480	tAc/tTc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191455	185191456	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	216	759	0	ENST00000265026.3:c.2337dup	p.Glu780Ter	p.E780*	ENST00000265026	NM_004721.4	779	aat/aaTt																																																																															
MSH3	4437	MSKCC	GRCh37	5	80149966	80149966	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	105	346	0	ENST00000265081.6:c.2831A>G	p.Asn944Ser	p.N944S	ENST00000265081	NM_002439.4	944	aAt/aGt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131911533	131911533	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	78	419	0	ENST00000265335.6:c.278T>C	p.Leu93Pro	p.L93P	ENST00000265335		93	cTt/cCt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860257	151860257	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	AA			P-0029566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	146	463	0	ENST00000262189.6:c.10405delinsTT	p.Leu3469PhefsTer26	p.L3469Ffs*26	ENST00000262189	NM_170606.2	3469	Ctt/TTtt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0036672-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			553	51	354	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0036672-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			677	142	501	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
RB1	5925	MSKCC	GRCh37	13	49050979	49050979	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0036672-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	35	218	0	ENST00000267163.4:c.2663G>C	p.Ser888Thr	p.S888T	ENST00000267163	NM_000321.2	888	aGt/aCt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0037164-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			2323	85	399	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0037164-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			713	228	637	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624296	89624296	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037164-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			635	152	539	1	ENST00000371953.3:c.70G>C	p.Asp24His	p.D24H	ENST00000371953	NM_000314.4	24	Gac/Cac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604655	48604655	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28936392		P-0037164-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	69	322	0	ENST00000342988.3:c.1477G>C	p.Asp493His	p.D493H	ENST00000342988	NM_005359.5	493	Gat/Cat																																																																															
BCOR	54880	MSKCC	GRCh37	X	39935769	39935769	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037164-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			743	55	448	0	ENST00000378444.4:c.103G>T	p.Asp35Tyr	p.D35Y	ENST00000378444	NM_001123385.1	35	Gat/Tat																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244040	46244040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037164-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			670	60	455	0	ENST00000334344.6:c.2134G>A	p.Glu712Lys	p.E712K	ENST00000334344	NM_152641.2	712	Gaa/Aaa																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913233		P-0043317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	431	967	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413049	139413049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	303	699	0	ENST00000277541.6:c.1093C>T	p.Arg365Cys	p.R365C	ENST00000277541	NM_017617.3	365	Cgc/Tgc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6035204	6035207	+	frameshift_variant	Frame_Shift_Del	DEL	CTGT	CTGT	-			P-0043317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	519	638	0	ENST00000265849.7:c.861_864delACAG	p.Arg287SerfsTer19	p.R287Sfs*19	ENST00000265849	NM_000535.5	287	agACAG/ag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120506303	120506303	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	213	619	0	ENST00000256646.2:c.1809C>G	p.Ile603Met	p.I603M	ENST00000256646	NM_024408.3	603	atC/atG																																																																															
RB1	5925	MSKCC	GRCh37	13	48951082	48951082	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	156	368	0	ENST00000267163.4:c.1244T>A	p.Ile415Lys	p.I415K	ENST00000267163	NM_000321.2	415	aTa/aAa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47699332	47699332	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0043317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	343	556	0	ENST00000347630.2:c.176C>G	p.Ser59Ter	p.S59*	ENST00000347630	NM_001007230.1	59	tCa/tGa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464507	25464507	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	293	865	0	ENST00000264709.3:c.2006C>G	p.Ser669Cys	p.S669C	ENST00000264709	NM_175629.2	669	tCc/tGc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610583	52610583	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	243	570	0	ENST00000394830.3:c.3590A>C	p.Glu1197Ala	p.E1197A	ENST00000394830	NM_018313.4	1197	gAa/gCa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521651	89521651	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	230	665	0	ENST00000336596.2:c.2728A>G	p.Ile910Val	p.I910V	ENST00000336596	NM_005233.5	910	Atc/Gtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	46	519	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0043341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	45	712	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610293	81610293	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	32	544	0	ENST00000298171.2:c.1891T>A	p.Phe631Ile	p.F631I	ENST00000298171	NM_000369.2	631	Ttc/Atc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95596406	95596406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	29	420	0	ENST00000343455.3:c.562G>A	p.Glu188Lys	p.E188K	ENST00000343455	NM_177438.2	188	Gaa/Aaa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437910	52437910	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0043341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	62	797	1	ENST00000460680.1:c.1251G>T	p.Arg417Ser	p.R417S	ENST00000460680	NM_004656.3	417	agG/agT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32172165	32172165	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0043341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	26	669	0	ENST00000375023.3:c.2867G>C	p.Cys956Ser	p.C956S	ENST00000375023	NM_004557.3	956	tGt/tCt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87563487	87563487	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	80	682	0	ENST00000277120.3:c.1875G>C	p.Glu625Asp	p.E625D	ENST00000277120		625	gaG/gaC																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118709	115118709	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	70	541	0	ENST00000257566.3:c.632A>C	p.Asn211Thr	p.N211T	ENST00000257566	NM_016569.3	211	aAc/aCc																																																																															
CDH1	999	MSKCC	GRCh37	16	68849488	68849491	+	frameshift_variant	Frame_Shift_Del	DEL	TCTC	TCTC	-			P-0043407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	53	668	0	ENST00000261769.5:c.1395_1398del	p.Leu466ProfsTer14	p.L466Pfs*14	ENST00000261769	NM_004360.3	464	gTCTCt/gt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425634	49425634	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	43	783	0	ENST00000301067.7:c.12854del	p.Gly4285AlafsTer99	p.G4285Afs*99	ENST00000301067	NM_003482.3	4285	gGc/gc																																																																															
MED12	9968	MSKCC	GRCh37	X	70339253	70339270	+	inframe_deletion	In_Frame_Del	DEL	GGTTTCAATAACCAGCCT	GGTTTCAATAACCAGCCT	-			P-0043407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	26	631	0	ENST00000374080.3:c.131_148del	p.Gly44_Pro49del	p.G44_P49del	ENST00000374080		44	GGTTTCAATAACCAGCCT/-																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038879	12038879	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	58	278	0	ENST00000396373.4:c.1172A>G	p.Tyr391Cys	p.Y391C	ENST00000396373	NM_001987.4	391	tAt/tGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832212	72832212	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	23	445	0	ENST00000268489.5:c.4369G>T	p.Glu1457Ter	p.E1457*	ENST00000268489	NM_006885.3	1457	Gag/Tag																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42843742	42843827	+	frameshift_variant	Frame_Shift_Del	DEL	TCAGAGGCTTCTGCAGCTTCATCAGCGCAATGTCATTGTTCTTGGTCTTGGAGTCATAATTTGGATGAGAAATCACTTTTTCTACT	TCAGAGGCTTCTGCAGCTTCATCAGCGCAATGTCATTGTTCTTGGTCTTGGAGTCATAATTTGGATGAGAAATCACTTTTTCTACT	-			P-0043416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	92	467	0	ENST00000398585.3:c.1092_1177del	p.Gln364HisfsTer51	p.Q364Hfs*51	ENST00000398585	NM_001135099.1	364	caAGTAGAAAAAGTGATTTCTCATCCAAATTATGACTCCAAGACCAAGAACAATGACATTGCGCTGATGAAGCTGCAGAAGCCTCTGAct/cact																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265618	152265618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	189	479	0	ENST00000206249.3:c.1071G>A	p.Met357Ile	p.M357I	ENST00000206249	NM_000125.3	357	atG/atA																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0043478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	60	632	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0043648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	87	581	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
RAC1	5879	MSKCC	GRCh37	7	6431635	6431635	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	104	563	1	ENST00000356142.4:c.188A>T	p.Asp63Val	p.D63V	ENST00000356142	NM_018890.3	63	gAt/gTt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	134	733	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645889	67645890	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACACGTGTC			P-0043648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	107	549	0	ENST00000264010.4:c.818_826dup	p.Cys275_Pro276insHisThrCys	p.C275_P276insHTC	ENST00000264010	NM_006565.3	273	tac/tACACGTGTCac																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183145	56183211	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTATCTGTCCTTATTTTTGTTTTTAACATACAAGGTCATTTGCTGTGTTTGTTGACAGGTGCCAA	TTTTATCTGTCCTTATTTTTGTTTTTAACATACAAGGTCATTTGCTGTGTTTGTTGACAGGTGCCAA	-			P-0043648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	58	176	0	ENST00000399503.3:c.4115-57_4124del		p.X1372_splice	ENST00000399503	NM_005921.1	1372																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56189433	56189446	+	frameshift_variant	Frame_Shift_Del	DEL	TTAGAACTTCAACC	TTAGAACTTCAACC	-			P-0043648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	82	546	0	ENST00000399503.3:c.4466_4479del	p.Leu1489SerfsTer29	p.L1489Sfs*29	ENST00000399503	NM_005921.1	1489	TTAGAACTTCAACCt/t																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878808	151878808	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	217	570	0	ENST00000262189.6:c.6137del	p.Pro2046GlnfsTer32	p.P2046Qfs*32	ENST00000262189	NM_170606.2	2046	cCa/ca																																																																															
STK11	6794	MSKCC	GRCh37	19	1220502	1220502	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0043700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	192	679	0	ENST00000326873.7:c.595G>T	p.Glu199Ter	p.E199*	ENST00000326873	NM_000455.4	199	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440573	49440573	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0043700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	144	646	0	ENST00000301067.7:c.4237A>G	p.Ile1413Val	p.I1413V	ENST00000301067	NM_003482.3	1413	Atc/Gtc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95577669	95577669	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	109	289	0	ENST00000343455.3:c.2241G>C	p.Gln747His	p.Q747H	ENST00000343455	NM_177438.2	747	caG/caC																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610577	10610592	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGCGTCACCTCCGC	AGGGCGTCACCTCCGC	-			P-0043700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	181	670	0	ENST00000171111.5:c.118_133del	p.Ala40ProfsTer23	p.A40Pfs*23	ENST00000171111	NM_203500.1	40	GCGGAGGTGACGCCCTcc/cc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521763	89521763	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs192800580		P-0043700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	62	220	0	ENST00000336596.2:c.2840C>A	p.Ser947Tyr	p.S947Y	ENST00000336596	NM_005233.5	947	tCc/tAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68995555	68995555	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	73	406	0	ENST00000288368.4:c.1959T>G	p.Asp653Glu	p.D653E	ENST00000288368	NM_024870.2	653	gaT/gaG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0043704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	46	507	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612900	228612900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	140	510	2	ENST00000366696.1:c.127C>T	p.Arg43Trp	p.R43W	ENST00000366696	NM_003493.2	43	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578476	7578476	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	118	690	3	ENST00000269305.4:c.454C>A	p.Pro152Thr	p.P152T	ENST00000269305	NM_001126112.2	152	Ccg/Acg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148516774	148516774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	26	221	0	ENST00000320356.2:c.913C>T	p.His305Tyr	p.H305Y	ENST00000320356	NM_004456.4	305	Cat/Tat																																																																															
POLE	5426	MSKCC	GRCh37	12	133248799	133248799	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0043704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	59	401	0	ENST00000320574.5:c.1794+2T>C		p.X598_splice	ENST00000320574	NM_006231.2	598																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10600396	10600396	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	108	694	0	ENST00000171111.5:c.1459G>C	p.Ala487Pro	p.A487P	ENST00000171111	NM_203500.1	487	Gct/Cct																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144095	11144095	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	104	663	0	ENST00000344626.4:c.3676C>T	p.Gln1226Ter	p.Q1226*	ENST00000344626	NM_003072.3	1226	Cag/Tag																																																																															
CDK6	1021	MSKCC	GRCh37	7	92404108	92404108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	42	319	0	ENST00000265734.4:c.271G>A	p.Glu91Lys	p.E91K	ENST00000265734	NM_001259.6	91	Gaa/Aaa																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128206818	128206818	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	57	330	0	ENST00000265960.3:c.1405G>C	p.Glu469Gln	p.E469Q	ENST00000265960	NM_001006617.1	469	Gaa/Caa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864632	68864632	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0043704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	16	113	0	ENST00000288368.4:c.3G>A	p.Met1?	p.M1?	ENST00000288368	NM_024870.2	1	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0043915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	209	690	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0043915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	88	351	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528742	8528742	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1061345		P-0043915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	43	294	0	ENST00000356435.5:c.390G>T	p.Met130Ile	p.M130I	ENST00000356435		130	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0031368-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			394	116	735	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376234	15376235	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031368-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			467	57	602	0	ENST00000263377.2:c.779dup	p.Pro261ThrfsTer41	p.P261Tfs*41	ENST00000263377	NM_058243.2	260	cca/ccCa																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741660	17741660	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	68	273	0	ENST00000250003.3:c.331C>G	p.Arg111Gly	p.R111G	ENST00000250003	NM_002478.4	111	Cgc/Ggc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431411	121431411	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	171	546	0	ENST00000257555.6:c.615G>C	p.Lys205Asn	p.K205N	ENST00000257555		205	aaG/aaC																																																																															
LATS2	26524	MSKCC	GRCh37	13	21565464	21565464	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	116	628	0	ENST00000382592.4:c.422A>T	p.Tyr141Phe	p.Y141F	ENST00000382592	NM_014572.2	141	tAc/tTc																																																																															
RB1	5925	MSKCC	GRCh37	13	49030351	49030351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	82	246	0	ENST00000267163.4:c.1826C>A	p.Pro609His	p.P609H	ENST00000267163	NM_000321.2	609	cCt/cAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42003165	42003165	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	257	500	0	ENST00000219905.7:c.2702A>T	p.Gln901Leu	p.Q901L	ENST00000219905	NM_001164273.1	901	cAa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	269	573	0	ENST00000269305.4:c.472del	p.Arg158AlafsTer12	p.R158Afs*12	ENST00000269305	NM_001126112.2	158	Cgc/gc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41256900	41256900	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	56	431	0	ENST00000357654.3:c.286G>C	p.Asp96His	p.D96H	ENST00000357654	NM_007294.3	96	Gac/Cac																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792609	33792609	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	12	14	0	ENST00000498907.2:c.712G>T	p.Ala238Ser	p.A238S	ENST00000498907	NM_004364.3	238	Gcg/Tcg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228164	36228535	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGAGAGGTCTGGGGTGTGATGCCTGGGTCAGGGCGCCCCTATGAGAGCTCTTGAGGGTGGGAGTTAACTGTAGAGGTTGGAAACTGAGGCCTGGGGAGGAGACACTAGGTCACTTGAAGAGTTATTTCTAGAGTTAGCCAGGCTCCGTGGCTCATGCCTGTAATCCCGCCACTTTGGGAGGCCGAGGCAGGAGGATCGCATGAGCCCAGGAGTTGGAGACCAGCGTAGGCAACATGGCAAAACCCCATCTCTAAAATAAAAATTTAAAAAAGTTATTTCTAGAGCTGACATCAGAAAAATGAACCCCACCCATTTCCCTGTTAGCTCTGTCTTCAACAGTATATTCCTCCTTCCCCTGCTGCCACCTGCA	GGTGAGAGGTCTGGGGTGTGATGCCTGGGTCAGGGCGCCCCTATGAGAGCTCTTGAGGGTGGGAGTTAACTGTAGAGGTTGGAAACTGAGGCCTGGGGAGGAGACACTAGGTCACTTGAAGAGTTATTTCTAGAGTTAGCCAGGCTCCGTGGCTCATGCCTGTAATCCCGCCACTTTGGGAGGCCGAGGCAGGAGGATCGCATGAGCCCAGGAGTTGGAGACCAGCGTAGGCAACATGGCAAAACCCCATCTCTAAAATAAAAATTTAAAAAAGTTATTTCTAGAGCTGACATCAGAAAAATGAACCCCACCCATTTCCCTGTTAGCTCTGTCTTCAACAGTATATTCCTCCTTCCCCTGCTGCCACCTGCA	-			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	98	530	0	ENST00000222270.7:c.7550+2_7551del		p.X2517_splice	ENST00000222270	NM_014727.1	2517																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36228640	36228754	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCAGGTATGGAGTGTGAGCTGGGGGGCGGGTGGTGGTCTGGAAGGGTCTTAGAGAGTGAGCAGGGGTGAGAGAGGTCATTCTGAGCACCAGCCTGGGTGACACTGCTGTCCCTC	ACCAGGTATGGAGTGTGAGCTGGGGGGCGGGTGGTGGTCTGGAAGGGTCTTAGAGAGTGAGCAGGGGTGAGAGAGGTCATTCTGAGCACCAGCCTGGGTGACACTGCTGTCCCTC	-			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	96	603	0	ENST00000222270.7:c.7658+1_7659-1del		p.X2553_splice	ENST00000222270	NM_014727.1	2553																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36228841	36228959	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGGTGAGTGGGGTTGGGGGGGAGGATGCCCCTTGGGTGGACGGACAGGTGCACTGGGTAGGGGGTACTGTCTGGTTTCTGTCCCCCTCCCCCCTGAGTTCCCTGTTCATCCTGCCCTG	CAGGTGAGTGGGGTTGGGGGGGAGGATGCCCCTTGGGTGGACGGACAGGTGCACTGGGTAGGGGGTACTGTCTGGTTTCTGTCCCCCTCCCCCCTGAGTTCCCTGTTCATCCTGCCCTG	-			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	111	583	0	ENST00000222270.7:c.7742+1_7743-1del		p.X2581_splice	ENST00000222270	NM_014727.1	2581																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36229091	36229180	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTGGGCTCCCAGTGGCTGTGGGAAGACAGTGGGTGAAGCGAGCCTGTCCGCGGGGACAGAGCACCTGATCTCCCCACCTCATCCCTGC	AGGTGGGCTCCCAGTGGCTGTGGGAAGACAGTGGGTGAAGCGAGCCTGTCCGCGGGGACAGAGCACCTGATCTCCCCACCTCATCCCTGC	-			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	82	533	0	ENST00000222270.7:c.7872+2_7873del		p.X2624_splice	ENST00000222270	NM_014727.1	2624																																																																																
ERCC2	2068	MSKCC	GRCh37	19	45864782	45864783	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	133	530	0	ENST00000391945.4:c.1236dup	p.Gly413ArgfsTer10	p.G413Rfs*10	ENST00000391945	NM_000400.3	412	-/A																																																																															
BCL6	604	MSKCC	GRCh37	3	187447079	187447079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	302	568	1	ENST00000232014.4:c.1114G>A	p.Ala372Thr	p.A372T	ENST00000232014	NM_001130845.1	372	Gcc/Acc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630739	187630739	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	101	513	0	ENST00000441802.2:c.243C>A	p.Asn81Lys	p.N81K	ENST00000441802	NM_005245.3	81	aaC/aaA																																																																															
MSH3	4437	MSKCC	GRCh37	5	80088622	80088637	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	GGAGAACAGGATCAAT	GGAGAACAGGATCAAT	TATTG			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	37	416	2	ENST00000265081.6:c.2614_2629delinsTATTG	p.Gly872TyrfsTer2	p.G872Yfs*2	ENST00000265081	NM_002439.4	872	GGAGAACAGGATCAATat/TATTGat																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056274	26056274	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	68	426	0	ENST00000343677.2:c.383C>G	p.Pro128Arg	p.P128R	ENST00000343677	NM_005319.3	128	cCt/cGt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324452	31324470	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGGGGTCACTCACCGGCCT	CGGGGTCACTCACCGGCCT	-			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	18	329	0	ENST00000412585.2:c.338_343+13del		p.X113_splice	ENST00000412585	NM_005514.6	113																																																																																
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0043124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	77	426	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0043124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	251	589	0	ENST00000269305.4:c.560-2A>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134911490	134911490	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	237	605	0	ENST00000398015.3:c.1955C>A	p.Thr652Asn	p.T652N	ENST00000398015	NM_004441.4	652	aCc/aAc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984826	11984831	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGCA	TGGGCA	G			P-0043124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	191	450	0	ENST00000353533.5:c.372_377delinsG	p.Ser124ArgfsTer6	p.S124Rfs*6	ENST00000353533	NM_003010.3	124	agTGGGCAa/agGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0043126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	252	372	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0043126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	87	260	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106512981	106512981	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0043126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	64	232	0	ENST00000359195.3:c.1996-1G>T		p.X666_splice	ENST00000359195	NM_002649.2	666																																																																																
NCOA3	8202	MSKCC	GRCh37	20	46251015	46251015	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	83	319	0	ENST00000371998.3:c.24G>T	p.Leu8Phe	p.L8F	ENST00000371998		8	ttG/ttT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485280	8485280	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	81	445	0	ENST00000356435.5:c.3100G>T	p.Val1034Leu	p.V1034L	ENST00000356435		1034	Gtg/Ttg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221284	1221284	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	319	848	0	ENST00000326873.7:c.810del	p.Ser271AlafsTer16	p.S271Afs*16	ENST00000326873	NM_000455.4	269	aaG/aa																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944895	31944895	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	76	358	2	ENST00000340398.3:c.206G>T	p.Arg69Met	p.R69M	ENST00000340398	NM_001013699.2	69	aGg/aTg																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281360	49281360	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	168	851	0	ENST00000282018.3:c.407G>T	p.Arg136Leu	p.R136L	ENST00000282018	NM_020377.2	136	cGt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577543	7577543	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	140	640	0	ENST00000269305.4:c.738G>C	p.Met246Ile	p.M246I	ENST00000269305	NM_001126112.2	246	atG/atC																																																																															
MALT1	10892	MSKCC	GRCh37	18	56390279	56390279	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0043126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	50	167	0	ENST00000348428.3:c.1019-1G>T		p.X340_splice	ENST00000348428	NM_006785.3	340																																																																																
DOT1L	84444	MSKCC	GRCh37	19	2216307	2216307	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	125	623	0	ENST00000398665.3:c.1951C>T	p.Gln651Ter	p.Q651*	ENST00000398665	NM_032482.2	651	Cag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144097	11144097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	141	754	1	ENST00000344626.4:c.3678G>T	p.Gln1226His	p.Q1226H	ENST00000344626	NM_003072.3	1226	caG/caT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144527	11144527	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	106	568	0	ENST00000344626.4:c.3859G>T	p.Glu1287Ter	p.E1287*	ENST00000344626	NM_003072.3	1287	Gag/Tag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470949	25470949	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	145	711	0	ENST00000264709.3:c.812A>T	p.Asp271Val	p.D271V	ENST00000264709	NM_175629.2	271	gAc/gTc																																																																															
ALK	238	MSKCC	GRCh37	2	29416668	29416668	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	95	446	0	ENST00000389048.3:c.4285C>A	p.Gln1429Lys	p.Q1429K	ENST00000389048	NM_004304.4	1429	Cag/Aag																																																																															
NF2	4771	MSKCC	GRCh37	22	30069466	30069466	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0043126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	122	527	1	ENST00000338641.4:c.1331C>G	p.Ser444Ter	p.S444*	ENST00000338641	NM_000268.3	444	tCa/tGa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217307	66217307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	44	197	0	ENST00000273854.3:c.2308G>A	p.Gly770Arg	p.G770R	ENST00000273854	NM_004439.5	770	Ggg/Agg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584452	187584452	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0043126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	52	236	0	ENST00000441802.2:c.3580+1G>T		p.X1194_splice	ENST00000441802	NM_005245.3	1194																																																																																
IL7R	3575	MSKCC	GRCh37	5	35857128	35857128	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	34	208	0	ENST00000303115.3:c.49G>T	p.Val17Phe	p.V17F	ENST00000303115	NM_002185.3	17	Gtc/Ttc																																																																															
MET	4233	MSKCC	GRCh37	7	116418851	116418851	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	66	284	0	ENST00000397752.3:c.3362T>C	p.Val1121Ala	p.V1121A	ENST00000397752	NM_000245.2	1121	gTt/gCt																																																																															
MED12	9968	MSKCC	GRCh37	X	70347930	70347930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	124	612	0	ENST00000374080.3:c.3169G>T	p.Ala1057Ser	p.A1057S	ENST00000374080		1057	Gcc/Tcc																																																																															
BTK	695	MSKCC	GRCh37	X	100617585	100617585	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	122	593	0	ENST00000308731.7:c.484G>T	p.Ala162Ser	p.A162S	ENST00000308731	NM_000061.2	162	Gct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0043145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	15	341	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	46	655	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0043178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	726	794	3	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0043178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	148	326	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55266472	55266472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	226	545	0	ENST00000275493.2:c.2764G>A	p.Glu922Lys	p.E922K	ENST00000275493	NM_005228.3	922	Gag/Aag																																																																															
CBFB	865	MSKCC	GRCh37	16	67063711	67063711	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	217	300	2	ENST00000412916.2:c.160G>T	p.Glu54Ter	p.E54*	ENST00000412916		54	Gaa/Taa																																																																															
ATR	545	MSKCC	GRCh37	3	142186874	142186874	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	127	270	0	ENST00000350721.4:c.6589A>C	p.Ile2197Leu	p.I2197L	ENST00000350721	NM_001184.3	2197	Atc/Ctc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577555	7577555	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	153	625	3	ENST00000269305.4:c.726C>A	p.Cys242Ter	p.C242*	ENST00000269305	NM_001126112.2	242	tgC/tgA																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70971050	70971050	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	81	616	0	ENST00000276594.2:c.1211G>C	p.Arg404Thr	p.R404T	ENST00000276594	NM_024504.3	404	aGa/aCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0040656-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			522	46	470	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259500	89259500	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040656-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			482	32	521	0	ENST00000336596.2:c.644C>A	p.Thr215Lys	p.T215K	ENST00000336596	NM_005233.5	215	aCg/aAg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259574	89259574	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040656-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			392	22	405	0	ENST00000336596.2:c.718C>A	p.Pro240Thr	p.P240T	ENST00000336596	NM_005233.5	240	Cca/Aca																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118372434	118372434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040656-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			718	56	624	0	ENST00000534358.1:c.6367C>T	p.Pro2123Ser	p.P2123S	ENST00000534358	NM_005933.3	2123	Cca/Tca																																																																															
BARD1	580	MSKCC	GRCh37	2	215645695	215645695	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040656-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			560	45	566	0	ENST00000260947.4:c.903G>T	p.Glu301Asp	p.E301D	ENST00000260947	NM_000465.2	301	gaG/gaT																																																																															
TOP1	7150	MSKCC	GRCh37	20	39750346	39750346	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040656-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			383	34	352	0	ENST00000361337.2:c.1961A>G	p.Lys654Arg	p.K654R	ENST00000361337	NM_003286.2	654	aAg/aGg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42839812	42839812	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0040656-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			369	26	414	0	ENST00000398585.3:c.1427G>T	p.Gly476Val	p.G476V	ENST00000398585	NM_001135099.1	476	gGt/gTt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673827	30673827	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040656-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			434	32	422	0	ENST00000376406.3:c.3133G>T	p.Ala1045Ser	p.A1045S	ENST00000376406	NM_014641.2	1045	Gcc/Tcc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965626	93965626	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040656-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			539	54	453	0	ENST00000369303.4:c.2302A>T	p.Ser768Cys	p.S768C	ENST00000369303	NM_004440.3	768	Agc/Tgc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528732	157528732	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040656-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			547	38	597	0	ENST00000346085.5:c.6457A>G	p.Lys2153Glu	p.K2153E	ENST00000346085	NM_020732.3	2153	Aaa/Gaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151848043	151848043	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040656-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			396	28	320	0	ENST00000262189.6:c.12716G>C	p.Ser4239Thr	p.S4239T	ENST00000262189	NM_170606.2	4239	aGt/aCt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271167	38271167	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040656-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			523	32	599	0	ENST00000425967.3:c.2541T>A	p.Asn847Lys	p.N847K	ENST00000425967	NM_001174067.1	847	aaT/aaA																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518237	8518237	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040656-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			353	27	362	0	ENST00000356435.5:c.1154C>G	p.Pro385Arg	p.P385R	ENST00000356435		385	cCc/cGc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045495	47045508	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGAGAAAAGTAT	GCAGAGAAAAGTAT	-			P-0040656-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			669	45	723	0	ENST00000329236.7:c.2229_2242del	p.Arg744HisfsTer33	p.R744Hfs*33	ENST00000329236	NM_001204466.1	743	cGCAGAGAAAAGTAT/c																																																																															
BTK	695	MSKCC	GRCh37	X	100611073	100611073	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040656-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			755	45	821	0	ENST00000308731.7:c.1533C>A	p.Tyr511Ter	p.Y511*	ENST00000308731	NM_000061.2	511	taC/taA																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	164	583	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0042826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	353	1098	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0042834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	146	735	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193202273	193202273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	60	556	0	ENST00000367435.3:c.1305G>A	p.Met435Ile	p.M435I	ENST00000367435	NM_024529.4	435	atG/atA																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416588	121416588	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	87	758	0	ENST00000257555.6:c.17G>C	p.Ser6Thr	p.S6T	ENST00000257555		6	aGc/aCc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646672	23646672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	29	628	0	ENST00000261584.4:c.1195C>T	p.Pro399Ser	p.P399S	ENST00000261584	NM_024675.3	399	Cct/Tct																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621158	1621168	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCGGAGCTG	CCCCGGAGCTG	-			P-0042834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	118	1065	0	ENST00000344749.5:c.978_988del	p.Ser327CysfsTer18	p.S327Cfs*18	ENST00000344749	NM_001136139.2	326	ggCAGCTCCGGGGat/ggat																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609639	81609639	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	286	699	1	ENST00000298171.2:c.1237G>T	p.Gly413Cys	p.G413C	ENST00000298171	NM_000369.2	413	Ggc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821140	72821153	+	frameshift_variant	Frame_Shift_Del	DEL	CCGGGCTCGCCGGT	CCGGGCTCGCCGGT	-			P-0042990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	39	742	0	ENST00000268489.5:c.11022_11035del	p.Pro3675GlyfsTer51	p.P3675Gfs*51	ENST00000268489	NM_006885.3	3674	ggACCGGCGAGCCCGGtg/ggtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578520	7578568	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGA	AGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGA	-			P-0042990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	307	990	0	ENST00000269305.4:c.376-14_410del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
E2F3	1871	MSKCC	GRCh37	6	20402565	20402565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	171	365	1	ENST00000346618.3:c.102C>A	p.Asp34Glu	p.D34E	ENST00000346618	NM_001949.4	34	gaC/gaA																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271273	38271273	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	307	958	0	ENST00000425967.3:c.2435C>G	p.Pro812Arg	p.P812R	ENST00000425967	NM_001174067.1	812	cCc/cGc																																																																															
AXL	558	MSKCC	GRCh37	19	41736935	41736935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	68	822	4	ENST00000301178.4:c.650G>A	p.Arg217His	p.R217H	ENST00000301178	NM_021913.4	217	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	105	828	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	201	557	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	47	436	0	ENST00000303115.3:c.361delA	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402577	139402577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	91	943	2	ENST00000277541.6:c.3340C>T	p.Arg1114Cys	p.R1114C	ENST00000277541	NM_017617.3	1114	Cgc/Tgc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	158	605	9	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932085	39932085	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	80	461	0	ENST00000378444.4:c.2514del	p.Lys839SerfsTer17	p.K839Sfs*17	ENST00000378444	NM_001123385.1	838	ccC/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs786201057		P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	63	654	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																															
NBN	4683	MSKCC	GRCh37	8	90958479	90958480	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	95	663	0	ENST00000265433.3:c.1958dup	p.Leu654AlafsTer5	p.L654Afs*5	ENST00000265433	NM_002485.4	653	aag/aaAg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2135246	2135246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	79	1025	2	ENST00000219476.3:c.4585C>T	p.Arg1529Trp	p.R1529W	ENST00000219476	NM_000548.3	1529	Cgg/Tgg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	60	986	1	ENST00000261937.6:c.89dupC	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188297	32188297	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	75	1002	6	ENST00000375023.3:c.1044del	p.Gly349AlafsTer49	p.G349Afs*49	ENST00000375023	NM_004557.3	348	ggC/gg																																																																															
NF2	4771	MSKCC	GRCh37	22	30050707	30050708	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	81	516	0	ENST00000338641.4:c.514dup	p.Arg172LysfsTer31	p.R172Kfs*31	ENST00000338641	NM_000268.3	170	cca/ccAa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	100	1156	2	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426774	49426774	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1334139538		P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	33	404	3	ENST00000301067.7:c.11714A>T	p.Gln3905Leu	p.Q3905L	ENST00000301067	NM_003482.3	3905	cAg/cTg																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39325183	39325183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	97	1069	0	ENST00000373001.3:c.136G>A	p.Ala46Thr	p.A46T	ENST00000373001	NM_022157.3	46	Gca/Aca																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436584	110436584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	106	1200	2	ENST00000375856.3:c.1817C>T	p.Ser606Leu	p.S606L	ENST00000375856	NM_003749.2	606	tCg/tTg																																																																															
IDH2	3418	MSKCC	GRCh37	15	90645513	90645513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	10	75	0	ENST00000330062.3:c.110G>A	p.Arg37His	p.R37H	ENST00000330062	NM_002168.2	37	cGc/cAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2133780	2133780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	73	915	0	ENST00000219476.3:c.3968C>T	p.Ala1323Val	p.A1323V	ENST00000219476	NM_000548.3	1323	gCg/gTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640449	3640449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142079276		P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	88	1120	1	ENST00000294008.3:c.3190G>A	p.Gly1064Arg	p.G1064R	ENST00000294008	NM_032444.2	1064	Gga/Aga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273995	10273995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	86	1130	2	ENST00000330684.3:c.274G>A	p.Gly92Arg	p.G92R	ENST00000330684	NM_001134407.1	92	Ggg/Agg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110098	8110098	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	98	605	0	ENST00000585124.1:c.507C>G	p.Ser169Arg	p.S169R	ENST00000585124	NM_004217.3	169	agC/agG																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66526083	66526083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	71	574	0	ENST00000358598.2:c.914G>A	p.Arg305His	p.R305H	ENST00000358598	NM_212471.2	305	cGt/cAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610505	10610505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	94	891	0	ENST00000171111.5:c.205G>A	p.Glu69Lys	p.E69K	ENST00000171111	NM_203500.1	69	Gag/Aag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210785	36210785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	88	1144	3	ENST00000222270.7:c.536G>A	p.Arg179Gln	p.R179Q	ENST00000222270	NM_014727.1	179	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214713	36214714	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	22	677	1	ENST00000222270.7:c.3145dup	p.Ala1049GlyfsTer39	p.A1049Gfs*39	ENST00000222270	NM_014727.1	1047	cgg/cGgg																																																																															
CIC	23152	MSKCC	GRCh37	19	42797405	42797405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	65	1039	3	ENST00000575354.2:c.3767G>A	p.Arg1256Gln	p.R1256Q	ENST00000575354	NM_015125.3	1256	cGg/cAg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095881	178095881	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	116	658	1	ENST00000397062.3:c.1450A>T	p.Met484Leu	p.M484L	ENST00000397062	NM_006164.4	484	Atg/Ttg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89156918	89156920	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	70	763	0	ENST00000336596.2:c.27_29del	p.Leu11del	p.L11del	ENST00000336596	NM_005233.5	7	aTCCtc/atc																																																																															
KDR	3791	MSKCC	GRCh37	4	55984846	55984846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	91	808	2	ENST00000263923.4:c.283G>A	p.Gly95Arg	p.G95R	ENST00000263923	NM_002253.2	95	Gga/Aga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181800	56181800	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	74	535	1	ENST00000399503.3:c.4024A>G	p.Lys1342Glu	p.K1342E	ENST00000399503	NM_005921.1	1342	Aaa/Gaa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265446	152265446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	57	665	0	ENST00000206249.3:c.899G>A	p.Arg300His	p.R300H	ENST00000206249	NM_000125.3	300	cGc/cAc																																																																															
RAC1	5879	MSKCC	GRCh37	7	6431665	6431665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	114	885	2	ENST00000356142.4:c.218C>T	p.Pro73Leu	p.P73L	ENST00000356142	NM_018890.3	73	cCg/cTg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729731	41729731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	60	614	0	ENST00000242208.4:c.798G>T	p.Glu266Asp	p.E266D	ENST00000242208	NM_002192.2	266	gaG/gaT																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29196013	29196014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	84	822	1	ENST00000240100.2:c.584dup	p.Pro196SerfsTer42	p.P196Sfs*42	ENST00000240100	NM_001394.6	195	ggt/ggGt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104706	69104706	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	37	756	0	ENST00000288368.4:c.4550T>C	p.Leu1517Pro	p.L1517P	ENST00000288368	NM_024870.2	1517	cTg/cCg																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841048	15841048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	39	383	0	ENST00000307771.7:c.1132C>T	p.Arg378Trp	p.R378W	ENST00000307771	NM_005089.3	378	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			356	149	328	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			338	174	423	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42799299	42799300	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	111	432	0	ENST00000575354.2:c.4790dupC	p.Pro1598ThrfsTer16	p.P1598Tfs*16	ENST00000575354	NM_015125.3	1595	tcc/tCcc																																																																															
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			273	120	283	0	ENST00000257430.4:c.4393_4394dupAG	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260606	16260606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200512596		P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	219	569	0	ENST00000375759.3:c.7871G>A	p.Arg2624Gln	p.R2624Q	ENST00000375759	NM_015001.2	2624	cGg/cAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			140	62	168	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			527	264	609	0	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			273	261	421	7	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	178	419	1	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
ABL1	25	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			664	313	778	1	ENST00000318560.5:c.2352delC	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345768	152345769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			256	102	266	0	ENST00000359321.1:c.801dup	p.His268ThrfsTer11	p.H268Tfs*11	ENST00000359321	NM_005431.1	267	-/A																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178258	56178258	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	99	308	0	ENST00000399503.3:c.3236del	p.Asn1079IlefsTer3	p.N1079Ifs*3	ENST00000399503	NM_005921.1	1077	tcA/tc																																																																															
NBN	4683	MSKCC	GRCh37	8	90967511	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	110	273	0	ENST00000265433.3:c.1396dup	p.Arg466LysfsTer5	p.R466Kfs*5	ENST00000265433	NM_002485.4	466	agg/aAgg																																																																															
APC	324	MSKCC	GRCh37	5	112174262	112174262	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			275	108	343	0	ENST00000257430.4:c.2971G>T	p.Glu991Ter	p.E991*	ENST00000257430	NM_000038.5	991	Gaa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432347	49432347	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			610	286	722	1	ENST00000301067.7:c.8792del	p.Pro2931HisfsTer12	p.P2931Hfs*12	ENST00000301067	NM_003482.3	2931	cCa/ca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874713	151874713	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			362	169	437	0	ENST00000262189.6:c.7825C>T	p.Arg2609Ter	p.R2609*	ENST00000262189	NM_170606.2	2609	Cga/Tga																																																																															
NEGR1	257194	MSKCC	GRCh37	1	71873248	71873248	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			259	134	328	0	ENST00000357731.5:c.946A>C	p.Ser316Arg	p.S316R	ENST00000357731	NM_173808.2	316	Agt/Cgt																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130637	29130637	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142243299		P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	195	445	0	ENST00000328354.6:c.73G>A	p.Val25Ile	p.V25I	ENST00000328354	NM_007194.3	25	Gtt/Att																																																																															
INHA	3623	MSKCC	GRCh37	2	220437222	220437223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			728	267	782	0	ENST00000243786.2:c.132dup	p.Ala45ArgfsTer29	p.A45Rfs*29	ENST00000243786	NM_002191.3	42	-/C																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349310	11349310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			421	224	359	0	ENST00000332029.2:c.26C>T	p.Ala9Val	p.A9V	ENST00000332029	NM_003745.1	9	gCc/gTc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133268	38133268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			487	235	545	0	ENST00000317025.8:c.4205G>A	p.Arg1402His	p.R1402H	ENST00000317025	NM_023034.1	1402	cGc/cAc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2958168	2958168	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs928782717		P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			573	274	700	0	ENST00000396946.4:c.2564G>A	p.Arg855Gln	p.R855Q	ENST00000396946	NM_032415.4	855	cGg/cAg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922084	39922085	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			417	33	328	0	ENST00000378444.4:c.4087_4088del	p.Cys1363GlnfsTer45	p.C1363Qfs*45	ENST00000378444	NM_001123385.1	1363	TGc/c																																																																															
CDC73	79577	MSKCC	GRCh37	1	193104554	193104554	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			298	169	375	0	ENST00000367435.3:c.341T>C	p.Leu114Ser	p.L114S	ENST00000367435	NM_024529.4	114	tTa/tCa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944154	71944154	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			567	278	685	0	ENST00000298229.2:c.1987T>C	p.Tyr663His	p.Y663H	ENST00000298229	NM_001567.3	663	Tat/Cat																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245043	46245043	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			422	186	509	0	ENST00000334344.6:c.3137A>C	p.Asn1046Thr	p.N1046T	ENST00000334344	NM_152641.2	1046	aAt/aCt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865040	57865040	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			627	276	738	0	ENST00000228682.2:c.2520del	p.Pro842HisfsTer104	p.P842Hfs*104	ENST00000228682	NM_005269.2	839	gaG/ga																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43784663	43784664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	175	362	0	ENST00000382044.4:c.10dup	p.Glu4GlyfsTer25	p.E4Gfs*25	ENST00000382044	NM_001141980.1	4	gag/gGag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3830778	3830778	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	210	426	0	ENST00000262367.5:c.1778A>C	p.His593Pro	p.H593P	ENST00000262367	NM_004380.2	593	cAc/cCc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822580	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGCTG	GCTGCTG	-			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			397	142	434	0	ENST00000268489.5:c.9589_9595del	p.Gln3197SerfsTer42	p.Q3197Sfs*42	ENST00000268489	NM_006885.3	3197	CAGCAGCag/ag																																																																															
MSI2	124540	MSKCC	GRCh37	17	55752390	55752390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			656	317	803	0	ENST00000284073.2:c.848C>T	p.Ala283Val	p.A283V	ENST00000284073	NM_138962.2	283	gCc/gTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602940	10602940	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			605	309	668	0	ENST00000171111.5:c.640-2A>G		p.X214_splice	ENST00000171111	NM_203500.1	214																																																																																
UPF1	5976	MSKCC	GRCh37	19	18976205	18976205	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			781	112	746	0	ENST00000262803.5:c.2965A>G	p.Met989Val	p.M989V	ENST00000262803	NM_002911.3	989	Atg/Gtg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976421	18976421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			689	351	826	0	ENST00000262803.5:c.3071G>A	p.Arg1024His	p.R1024H	ENST00000262803	NM_002911.3	1024	cGc/cAc																																																																															
ALK	238	MSKCC	GRCh37	2	29519814	29519814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			419	209	615	1	ENST00000389048.3:c.1757C>T	p.Ala586Val	p.A586V	ENST00000389048	NM_004304.4	586	gCc/gTc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29092892	29092892	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			345	187	368	2	ENST00000328354.6:c.1092A>G	p.Ile364Met	p.I364M	ENST00000328354	NM_007194.3	364	atA/atG																																																																															
MLH1	4292	MSKCC	GRCh37	3	37059012	37059012	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	159	387	0	ENST00000231790.2:c.806C>G	p.Ser269Ter	p.S269*	ENST00000231790	NM_000249.3	269	tCa/tGa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467833	66467834	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	48	343	0	ENST00000273854.3:c.435dup	p.Thr146AspfsTer3	p.T146Dfs*3	ENST00000273854	NM_004439.5	145	-/G																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721039	176721039	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			485	26	471	1	ENST00000439151.2:c.6674del	p.Pro2225GlnfsTer69	p.P2225Qfs*69	ENST00000439151	NM_022455.4	2224	Ccc/cc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672096	30672096	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	538	672	0	ENST00000376406.3:c.4864A>G	p.Thr1622Ala	p.T1622A	ENST00000376406	NM_014641.2	1622	Acc/Gcc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157488286	157488286	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	162	347	0	ENST00000346085.5:c.2992A>C	p.Ser998Arg	p.S998R	ENST00000346085	NM_020732.3	998	Agc/Cgc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148524267	148524269	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	131	315	0	ENST00000320356.2:c.715_717del	p.Glu239del	p.E239del	ENST00000320356	NM_004456.4	239	GAA/-																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860907	151860907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			220	113	266	0	ENST00000262189.6:c.9755G>A	p.Arg3252His	p.R3252H	ENST00000262189	NM_170606.2	3252	cGt/cAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400206	139400206	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			508	245	760	0	ENST00000277541.6:c.4142C>A	p.Pro1381His	p.P1381H	ENST00000277541	NM_017617.3	1381	cCc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	62	450	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0035830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	36	575	0	ENST00000269305.4:c.686_687delGT	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121796	2121796	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	30	751	0	ENST00000219476.3:c.1958G>C	p.Arg653Thr	p.R653T	ENST00000219476	NM_000548.3	653	aGa/aCa																																																																															
APC	324	MSKCC	GRCh37	5	112173345	112173345	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	84	281	0	ENST00000257430.4:c.2054G>A	p.Trp685Ter	p.W685*	ENST00000257430	NM_000038.5	685	tGg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579592	7579592	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs879254212		P-0036060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	142	478	0	ENST00000269305.4:c.97-2A>G		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
SF3B1	23451	MSKCC	GRCh37	2	198281557	198281557	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	98	493	0	ENST00000335508.6:c.574C>A	p.Pro192Thr	p.P192T	ENST00000335508	NM_012433.2	192	Cct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0036128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	120	596	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0036128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	45	707	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	30	417	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174437	11174437	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	80	757	0	ENST00000361445.4:c.7238G>T	p.Ser2413Ile	p.S2413I	ENST00000361445	NM_004958.3	2413	aGt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0037052-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			396	113	841	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55266472	55266472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037052-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			388	90	738	0	ENST00000275493.2:c.2764G>A	p.Glu922Lys	p.E922K	ENST00000275493	NM_005228.3	922	Gag/Aag																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2647745	2647745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037052-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			416	62	708	0	ENST00000342085.4:c.1648C>T	p.His550Tyr	p.H550Y	ENST00000342085	NM_002613.4	550	Cac/Tac																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40442025	40442025	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037052-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			560	34	842	1	ENST00000345506.4:c.270C>A	p.Tyr90Ter	p.Y90*	ENST00000345506	NM_003152.3	90	taC/taA																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117948	70117948	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037052-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			240	144	477	0	ENST00000245479.2:c.416T>C	p.Leu139Pro	p.L139P	ENST00000245479	NM_000346.3	139	cTg/cCg																																																																															
KDR	3791	MSKCC	GRCh37	4	55964968	55964968	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0037052-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			221	17	341	0	ENST00000263923.4:c.2269G>T	p.Ala757Ser	p.A757S	ENST00000263923	NM_002253.2	757	Gcc/Tcc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020396	69020396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037052-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			371	25	598	0	ENST00000288368.4:c.2768C>A	p.Ser923Tyr	p.S923Y	ENST00000288368	NM_024870.2	923	tCt/tAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0037168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	175	605	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827934	40827934	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61749502		P-0037168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	270	495	0	ENST00000373198.4:c.2494G>A	p.Ala832Thr	p.A832T	ENST00000373198	NM_133170.3	832	Gcc/Acc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	55	334	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0037168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	274	417	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	138	563	1	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112175706	112175706	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	202	277	0	ENST00000257430.4:c.4415del	p.Val1472GlufsTer35	p.V1472Efs*35	ENST00000257430	NM_000038.5	1472	gTa/ga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	137	497	0	ENST00000342988.3:c.1067C>G	p.Pro356Arg	p.P356R	ENST00000342988	NM_005359.5	356	cCt/cGt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524637	176524637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	546	838	0	ENST00000292408.4:c.2369G>A	p.Gly790Glu	p.G790E	ENST00000292408	NM_213647.1	790	gGa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0038955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	627	785	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0038955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	151	235	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856595	111856595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	20	183	0	ENST00000341259.2:c.646C>T	p.Arg216Cys	p.R216C	ENST00000341259	NM_005475.2	216	Cgc/Tgc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775932	9775932	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	286	700	1	ENST00000377346.4:c.396C>A	p.Cys132Ter	p.C132*	ENST00000377346	NM_005026.3	132	tgC/tgA																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829700	72829700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	239	621	0	ENST00000268489.5:c.6881G>A	p.Arg2294Gln	p.R2294Q	ENST00000268489	NM_006885.3	2294	cGa/cAa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56414908	56414908	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	113	458	0	ENST00000348428.3:c.2309A>G	p.Asn770Ser	p.N770S	ENST00000348428	NM_006785.3	770	aAt/aGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177789	56177789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	55	277	0	ENST00000399503.3:c.2762G>A	p.Ser921Asn	p.S921N	ENST00000399503	NM_005921.1	921	aGt/aAt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79952261	79952261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	140	300	0	ENST00000265081.6:c.269C>T	p.Pro90Leu	p.P90L	ENST00000265081	NM_002439.4	90	cCa/cTa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522142	157522143	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0038955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	191	570	0	ENST00000346085.5:c.4414_4415del	p.Pro1472LeufsTer37	p.P1472Lfs*37	ENST00000346085	NM_020732.3	1472	CCt/t																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0039168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	886	339	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0039168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	322	621	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281304	15281304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	117	757	0	ENST00000263388.2:c.4952C>A	p.Ala1651Asp	p.A1651D	ENST00000263388	NM_000435.2	1651	gCt/gAt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1920258	1920258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	99	717	0	ENST00000382891.5:c.1318G>A	p.Gly440Arg	p.G440R	ENST00000382891	NM_133335.3	440	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0039429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	267	676	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	90	303	0	ENST00000257430.4:c.4469del	p.His1490LeufsTer17	p.H1490Lfs*17	ENST00000257430	NM_000038.5	1490	cAt/ct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229393	36229393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	70	581	0	ENST00000222270.7:c.8083G>A	p.Glu2695Lys	p.E2695K	ENST00000222270	NM_014727.1	2695	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112173999	112173999	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	119	281	0	ENST00000257430.4:c.2708del	p.Asp903AlafsTer13	p.D903Afs*13	ENST00000257430	NM_000038.5	903	gAc/gc																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128305388	128305388	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	190	694	0	ENST00000265960.3:c.908A>T	p.Glu303Val	p.E303V	ENST00000265960	NM_001006617.1	303	gAa/gTa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255008	16255008	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	92	500	3	ENST00000375759.3:c.2273G>A	p.Arg758Gln	p.R758Q	ENST00000375759	NM_015001.2	758	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578264	7578274	+	protein_altering_variant	In_Frame_Del	DEL	GATAAGATGCT	GATAAGATGCT	CA			P-0042766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	208	726	3	ENST00000269305.4:c.575_585delinsTG	p.Gln192_Ile195delinsLeu	p.Q192_I195delinsL	ENST00000269305	NM_001126112.2	192	cAGCATCTTATC/cTG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0042854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	276	705	4	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	492	550	2				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0042854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	1269	1041	6	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0042854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	372	727	2	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																															
RB1	5925	MSKCC	GRCh37	13	48955526	48955526	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0042854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	171	440	2	ENST00000267163.4:c.1642A>T	p.Lys548Ter	p.K548*	ENST00000267163	NM_000321.2	548	Aaa/Taa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26022380	26022380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	668	563	5	ENST00000435504.4:c.277G>A	p.Glu93Lys	p.E93K	ENST00000435504		93	Gag/Aag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509107	66509107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	157	362	2	ENST00000273854.3:c.220G>A	p.Gly74Arg	p.G74R	ENST00000273854	NM_004439.5	74	Gga/Aga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859243	151859243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	101	395	0	ENST00000262189.6:c.11419G>A	p.Asp3807Asn	p.D3807N	ENST00000262189	NM_170606.2	3807	Gat/Aat																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248153	110248153	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0042854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	246	671	2	ENST00000374672.4:c.1319C>G	p.Ser440Ter	p.S440*	ENST00000374672	NM_004235.4	440	tCa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	17	410	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913381		P-0042897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	44	325	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577573	7577573	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0042897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	49	526	0	ENST00000269305.4:c.708C>G	p.Tyr236Ter	p.Y236*	ENST00000269305	NM_001126112.2	236	taC/taG																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637690	52637690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	13	327	2	ENST00000394830.3:c.2626C>T	p.Arg876Cys	p.R876C	ENST00000394830	NM_018313.4	876	Cgt/Tgt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453149	140453149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	15	338	0	ENST00000288602.6:c.1786G>A	p.Gly596Ser	p.G596S	ENST00000288602	NM_004333.4	596	Ggt/Agt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368223	45368223	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	31	337	0	ENST00000262160.6:c.1379C>A	p.Ser460Ter	p.S460*	ENST00000262160	NM_005901.5	460	tCa/tAa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94192710	94192710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	23	360	0	ENST00000323929.3:c.1364G>T	p.Gly455Val	p.G455V	ENST00000323929	NM_005591.3	455	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577568	+	missense_variant	Missense_Mutation	ONP	TAC	TAC	GTA			P-0042897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	46	541	1	ENST00000269305.4:c.713_715inv	p.Cys238_Asn239delinsLeuHis	p.C238_N239delinsLH	ENST00000269305	NM_001126112.2	238	tGTAac/tTACac																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30253848	30253848	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	68	537	0	ENST00000307677.4:c.606G>C	p.Glu202Asp	p.E202D	ENST00000307677	NM_138578.1	202	gaG/gaC																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830933	72830933	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	18	549	0	ENST00000268489.5:c.5648A>G	p.Lys1883Arg	p.K1883R	ENST00000268489	NM_006885.3	1883	aAa/aGa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81888129	81888129	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	57	496	0	ENST00000359376.3:c.274G>C	p.Glu92Gln	p.E92Q	ENST00000359376	NM_002661.3	92	Gaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0042931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	319	775	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965475	68965475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	222	683	2	ENST00000288368.4:c.1087C>T	p.Arg363Trp	p.R363W	ENST00000288368	NM_024870.2	363	Cgg/Tgg																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551375	150551375	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	168	916	1	ENST00000369026.2:c.632A>T	p.Glu211Val	p.E211V	ENST00000369026	NM_021960.4	211	gAg/gTg																																																																															
CCND2	894	MSKCC	GRCh37	12	4398006	4398006	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0042931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	51	479	0	ENST00000261254.3:c.572-2A>G		p.X191_splice	ENST00000261254	NM_001759.3	191																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49432099	49432099	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	158	831	0	ENST00000301067.7:c.9040C>G	p.Leu3014Val	p.L3014V	ENST00000301067	NM_003482.3	3014	Ctg/Gtg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41234422	41234422	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0042931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	373	475	0	ENST00000357654.3:c.4356del	p.Ala1453GlnfsTer3	p.A1453Qfs*3	ENST00000357654	NM_007294.3	1452	aaA/aa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202344	138202344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	221	666	0	ENST00000237289.4:c.2261C>T	p.Pro754Leu	p.P754L	ENST00000237289	NM_001270507.1	754	cCc/cTc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434842	110434842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	265	650	0	ENST00000375856.3:c.3559G>A	p.Glu1187Lys	p.E1187K	ENST00000375856	NM_003749.2	1187	Gag/Aag																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588856	69588871	+	frameshift_variant	Frame_Shift_Del	DEL	CTCACCACGCCCCGCT	CTCACCACGCCCCGCT	-			P-0041231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	83	689	0	ENST00000168712.1:c.365_380del	p.Glu122AlafsTer13	p.E122Afs*13	ENST00000168712	NM_002007.2	122	gAGCGGGGCGTGGTGAGc/gc																																																																															
RB1	5925	MSKCC	GRCh37	13	49027139	49027139	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0041231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	35	367	0	ENST00000267163.4:c.1706T>A	p.Leu569Ter	p.L569*	ENST00000267163	NM_000321.2	569	tTa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578554	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTTGTTGAGGGCAGGGGAGTA	CTTGTTGAGGGCAGGGGAGTA	-			P-0041231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	189	826	0	ENST00000269305.4:c.376_396del	p.Tyr126_Lys132del	p.Y126_K132del	ENST00000269305	NM_001126112.2	126	TACTCCCCTGCCCTCAACAAG/-																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11095976	11095980	+	frameshift_variant	Frame_Shift_Ins	INS	ATGTC	ATGTC	GAGGCA			P-0041231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	220	841	3	ENST00000344626.4:c.250_254delinsGAGGCA	p.Met84GlufsTer45	p.M84Efs*45	ENST00000344626	NM_003072.3	84	ATGTCg/GAGGCAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919329	178919329	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0041231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	41	216	0	ENST00000263967.3:c.813+1G>C		p.X271_splice	ENST00000263967	NM_006218.2	271																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0041299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	353	728	9	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	294	624	1	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463577	25463577	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	299	595	0	ENST00000264709.3:c.2105A>G	p.Asp702Gly	p.D702G	ENST00000264709	NM_175629.2	702	gAt/gGt																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793239	242793239	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	429	846	0	ENST00000334409.5:c.838G>C	p.Glu280Gln	p.E280Q	ENST00000334409	NM_005018.2	280	Gag/Cag																																																																															
AURKA	6790	MSKCC	GRCh37	20	54956509	54956509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	176	403	0	ENST00000312783.6:c.685G>C	p.Asp229His	p.D229H	ENST00000312783	NM_198436.1	229	Gat/Cat																																																																															
MTOR	2475	MSKCC	GRCh37	1	11272428	11272428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	323	534	0	ENST00000361445.4:c.3502G>A	p.Glu1168Lys	p.E1168K	ENST00000361445	NM_004958.3	1168	Gaa/Aaa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914571	32914586	+	protein_altering_variant	In_Frame_Del	DEL	AGAGAAGAAAATACTG	AGAGAAGAAAATACTG	GGTA			P-0041301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	243	467	1	ENST00000380152.3:c.6079_6094delinsGGTA	p.Arg2027_Ala2032delinsGlyThr	p.R2027_A2032delinsGT	ENST00000380152		2027	AGAGAAGAAAATACTGct/GGTAct																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857208	9857208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	258	535	0	ENST00000330684.3:c.4193A>G	p.Asp1398Gly	p.D1398G	ENST00000330684	NM_001134407.1	1398	gAc/gGc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226452	2226452	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	482	921	0	ENST00000398665.3:c.3932A>C	p.Asn1311Thr	p.N1311T	ENST00000398665	NM_032482.2	1311	aAc/aCc																																																																															
EP300	2033	MSKCC	GRCh37	22	41556728	41556728	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0041301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	190	305	0	ENST00000263253.7:c.3671+2T>G		p.X1224_splice	ENST00000263253	NM_001429.3	1224																																																																																
DNMT3A	1788	MSKCC	GRCh37	2	25536826	25536832	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGGCC	CGGGGCC	AT			P-0041301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	347	809	0	ENST00000264709.3:c.22_28delinsAT	p.Gly8MetfsTer55	p.G8Mfs*55	ENST00000264709	NM_175629.2	8	GGCCCCGgg/ATgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0042750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	113	373	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0042750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	662	636	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
PREX2	80243	MSKCC	GRCh37	8	68942745	68942745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	83	351	0	ENST00000288368.4:c.557G>A	p.Arg186Gln	p.R186Q	ENST00000288368	NM_024870.2	186	cGg/cAg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020344	69020344	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0042750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	77	325	0	ENST00000288368.4:c.2716T>A	p.Phe906Ile	p.F906I	ENST00000288368	NM_024870.2	906	Ttt/Att																																																																															
SDHA	6389	MSKCC	GRCh37	5	256470	256470	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3211483		P-0042750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1946	132	447	0	ENST00000264932.6:c.1930G>A	p.Val644Met	p.V644M	ENST00000264932	NM_004168.2	644	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501191		P-0042643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	246	1008	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	276	821	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
MST1	4485	MSKCC	GRCh37	3	49722906	49722906	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0042643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	10	244	1	ENST00000449682.2:c.1421del	p.Pro474GlnfsTer52	p.P474Qfs*52	ENST00000449682	NM_020998.3	474	cCa/ca																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619057	37619057	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	58	898	0	ENST00000447079.4:c.733G>T	p.Asp245Tyr	p.D245Y	ENST00000447079	NM_015083.1	245	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	246	454	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609674	117609674	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	125	447	0	ENST00000368508.3:c.7025A>G	p.Tyr2342Cys	p.Y2342C	ENST00000368508	NM_002944.2	2342	tAt/tGt																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913500		P-0042494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	86	256	0	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061102	38061121	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTTGCGGCTCTCAGGGCC	TCCTTGCGGCTCTCAGGGCC	G			P-0042494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	30	210	0	ENST00000250448.2:c.868_887delinsC	p.Gly290ProfsTer25	p.G290Pfs*25	ENST00000250448	NM_004496.3	290	GGCCCTGAGAGCCGCAAGGAc/Cc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0042650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	47	567	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578201	7578202	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0042650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	117	721	0	ENST00000269305.4:c.647_648del	p.Val216GlyfsTer5	p.V216Gfs*5	ENST00000269305	NM_001126112.2	216	gTG/g																																																																															
KDM5A	5927	MSKCC	GRCh37	12	459813	459813	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779410726		P-0042650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	44	676	1	ENST00000399788.2:c.1282C>T	p.Arg428Trp	p.R428W	ENST00000399788	NM_001042603.1	428	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112176030	112176030	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	35	300	0	ENST00000257430.4:c.4741delT	p.Ser1581LeufsTer69	p.S1581Lfs*69	ENST00000257430	NM_000038.5	1580	aTt/at																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619835	1619835	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	158	985	0	ENST00000344749.5:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000344749	NM_001136139.2	371	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173387	112173387	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	30	307	0	ENST00000257430.4:c.2096G>A	p.Trp699Ter	p.W699*	ENST00000257430	NM_000038.5	699	tGg/tAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591911	48591911	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	47	440	0	ENST00000342988.3:c.1074del	p.Gly359GlufsTer25	p.G359Efs*25	ENST00000342988	NM_005359.5	358	ggA/gg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0042672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	392	800	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0042672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	95	536	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99491813	99491813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	47	570	1	ENST00000268035.6:c.3598G>A	p.Val1200Ile	p.V1200I	ENST00000268035	NM_000875.3	1200	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0042676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	11	215	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0042676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	16	191	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786204041		P-0042676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	61	816	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0014522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	8	315	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1380	283	884	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717699	89717699	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	101	539	0	ENST00000371953.3:c.724G>T	p.Glu242Ter	p.E242*	ENST00000371953	NM_000314.4	242	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0038062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	407	712	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0038062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	66	201	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0038062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	209	352	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112173893	112173893	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	226	314	2	ENST00000257430.4:c.2602G>T	p.Glu868Ter	p.E868*	ENST00000257430	NM_000038.5	868	Gaa/Taa																																																																															
RHEB	6009	MSKCC	GRCh37	7	151168479	151168479	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0038062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	181	318	0	ENST00000262187.5:c.380+1G>T		p.X127_splice	ENST00000262187	NM_005614.3	127																																																																																
APC	324	MSKCC	GRCh37	5	112170720	112170720	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	360	381	3	ENST00000257430.4:c.1816A>G	p.Ile606Val	p.I606V	ENST00000257430	NM_000038.5	606	Ata/Gta																																																																															
BRCA2	675	MSKCC	GRCh37	13	32936792	32936792	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	91	348	0	ENST00000380152.3:c.7939del	p.Leu2647Ter	p.L2647*	ENST00000380152		2646	tgC/tg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741583	145741583	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	340	723	0	ENST00000428558.2:c.920C>G	p.Pro307Arg	p.P307R	ENST00000428558	NM_004260.3	307	cCa/cGa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	76	255	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028615	12028615	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	60	260	0	ENST00000353533.5:c.818A>G	p.Glu273Gly	p.E273G	ENST00000353533	NM_003010.3	273	gAa/gGa																																																																															
MGA	23269	MSKCC	GRCh37	15	42041743	42041743	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	58	290	0	ENST00000219905.7:c.5938G>T	p.Glu1980Ter	p.E1980*	ENST00000219905	NM_001164273.1	1980	Gaa/Taa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47143009	47143010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	93	372	0	ENST00000409792.3:c.4953dup	p.Thr1652TyrfsTer14	p.T1652Yfs*14	ENST00000409792	NM_014159.6	1651	-/T																																																																															
IRF4	3662	MSKCC	GRCh37	6	397186	397186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	82	314	0	ENST00000380956.4:c.571C>T	p.Pro191Ser	p.P191S	ENST00000380956	NM_001195286.1	191	Ccg/Tcg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488669	212488669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	87	318	0	ENST00000342788.4:c.2180G>T	p.Gly727Val	p.G727V	ENST00000342788	NM_005235.2	727	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574029	7574029	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	78	468	0	ENST00000269305.4:c.998G>C	p.Arg333Pro	p.R333P	ENST00000269305	NM_001126112.2	333	cGt/cCt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11184591	11184591	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	95	499	0	ENST00000361445.4:c.6626T>A	p.Leu2209Gln	p.L2209Q	ENST00000361445	NM_004958.3	2209	cTg/cAg																																																																															
PARP1	142	MSKCC	GRCh37	1	226564839	226564839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	77	423	0	ENST00000366794.5:c.1911G>T	p.Lys637Asn	p.K637N	ENST00000366794	NM_001618.3	637	aaG/aaT																																																																															
PALB2	79728	MSKCC	GRCh37	16	23635391	23635391	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	93	356	1	ENST00000261584.4:c.2773G>T	p.Val925Leu	p.V925L	ENST00000261584	NM_024675.3	925	Gtg/Ttg																																																																															
ATR	545	MSKCC	GRCh37	3	142281586	142281586	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	83	388	0	ENST00000350721.4:c.658G>C	p.Val220Leu	p.V220L	ENST00000350721	NM_001184.3	220	Gtg/Ctg																																																																															
TP63	8626	MSKCC	GRCh37	3	189586499	189586499	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	67	300	0	ENST00000264731.3:c.1123A>T	p.Lys375Ter	p.K375*	ENST00000264731	NM_003722.4	375	Aag/Tag																																																																															
PARK2	5071	MSKCC	GRCh37	6	161990445	161990446	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CC	CC	AA			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	49	332	1	ENST00000366898.1:c.874_875delinsTT	p.Gly292Phe	p.G292F	ENST00000366898	NM_004562.2	292	GGc/TTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240743	55240743	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	151	678	0	ENST00000275493.2:c.1987G>T	p.Gly663Trp	p.G663W	ENST00000275493	NM_005228.3	663	Ggg/Tgg																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15821821	15821821	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	21	198	0	ENST00000307771.7:c.214C>A	p.His72Asn	p.H72N	ENST00000307771	NM_005089.3	72	Cat/Aat																																																																															
MED12	9968	MSKCC	GRCh37	X	70344227	70344228	+	missense_variant	Missense_Mutation	DNP	AG	AG	CT			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	39	220	0	ENST00000374080.3:c.1963_1964inv	p.Ser655Leu	p.S655L	ENST00000374080		655	AGc/CTc																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913233		P-0042486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	50	851	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	163	526	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
INSR	3643	MSKCC	GRCh37	19	7184562	7184562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	458	656	0	ENST00000302850.5:c.739G>A	p.Asp247Asn	p.D247N	ENST00000302850	NM_000208.2	247	Gac/Aac																																																																															
RB1	5925	MSKCC	GRCh37	13	49039179	49039179	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	265	449	0	ENST00000267163.4:c.2257del	p.Ile753Ter	p.I753*	ENST00000267163	NM_000321.2	753	Ata/ta																																																																															
MGA	23269	MSKCC	GRCh37	15	42054392	42054392	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	41	416	0	ENST00000219905.7:c.7576G>T	p.Ala2526Ser	p.A2526S	ENST00000219905	NM_001164273.1	2526	Gca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578400	+	inframe_deletion	In_Frame_Del	DEL	GGTGGG	GGTGGG	-			P-0042403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	197	876	1	ENST00000269305.4:c.530_535del	p.Pro177_His178del	p.P177_H178del	ENST00000269305	NM_001126112.2	177	cCCCACCat/cat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630047	187630047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	168	669	0	ENST00000441802.2:c.935G>A	p.Ser312Asn	p.S312N	ENST00000441802	NM_005245.3	312	aGt/aAt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86629124	86629124	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	47	377	0	ENST00000274376.6:c.869A>C	p.Tyr290Ser	p.Y290S	ENST00000274376	NM_002890.2	290	tAc/tCc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139403359	139403359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	198	861	0	ENST00000277541.6:c.3134G>A	p.Cys1045Tyr	p.C1045Y	ENST00000277541	NM_017617.3	1045	tGc/tAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039522-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			175	60	445	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0039522-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			310	251	841	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KIT	3815	MSKCC	GRCh37	4	55597561	55597561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039522-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			218	62	541	3	ENST00000288135.5:c.2209G>A	p.Asp737Asn	p.D737N	ENST00000288135	NM_000222.2	737	Gac/Aac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374103	118374103	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039522-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			335	62	515	0	ENST00000534358.1:c.7496G>T	p.Gly2499Val	p.G2499V	ENST00000534358	NM_005933.3	2499	gGa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0039952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	69	455	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220489	1220489	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	100	723	0	ENST00000326873.7:c.582C>A	p.Asp194Glu	p.D194E	ENST00000326873	NM_000455.4	194	gaC/gaA																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851295	156851295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	159	819	0	ENST00000524377.1:c.2252C>A	p.Ala751Asp	p.A751D	ENST00000524377	NM_002529.3	751	gCc/gAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937624	32937624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	67	540	0	ENST00000380152.3:c.8285C>T	p.Pro2762Leu	p.P2762L	ENST00000380152		2762	cCt/cTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610601	10610602	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	111	790	0	ENST00000171111.5:c.108dup	p.Glu37Ter	p.E37*	ENST00000171111	NM_203500.1	36	-/T																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39021230	39021230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	43	295	0	ENST00000357387.3:c.106G>A	p.Asp36Asn	p.D36N	ENST00000357387	NM_152756.3	36	Gat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	44	443	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0042240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	38	333	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162622240	162622240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	40	450	1	ENST00000366898.1:c.457C>T	p.Pro153Ser	p.P153S	ENST00000366898	NM_004562.2	153	Ccc/Tcc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28886184	28886184	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	52	628	0	ENST00000282397.4:c.3438A>T	p.Arg1146Ser	p.R1146S	ENST00000282397	NM_002019.4	1146	agA/agT																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604739	48604764	+	frameshift_variant	Frame_Shift_Del	DEL	ACACCTTGCTGGATTGAAATTCACTT	ACACCTTGCTGGATTGAAATTCACTT	-			P-0042240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	38	499	0	ENST00000342988.3:c.1566_1591del	p.Cys523GlyfsTer45	p.C523Gfs*45	ENST00000342988	NM_005359.5	521	ACACCTTGCTGGATTGAAATTCACTTa/a																																																																															
PREX2	80243	MSKCC	GRCh37	8	68930097	68930097	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	55	479	0	ENST00000288368.4:c.158T>C	p.Met53Thr	p.M53T	ENST00000288368	NM_024870.2	53	aTg/aCg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70970874	70970874	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0042240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	52	574	0	ENST00000276594.2:c.1386+1G>T		p.X462_splice	ENST00000276594	NM_024504.3	462																																																																																
XIAP	331	MSKCC	GRCh37	X	123020356	123020356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	36	466	1	ENST00000355640.3:c.844G>A	p.Glu282Lys	p.E282K	ENST00000355640		282	Gag/Aag																																																																															
SUFU	51684	MSKCC	GRCh37	10	104352380	104352426	+	frameshift_variant	Frame_Shift_Del	DEL	CCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACAGA	CCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACAGA	-			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	237	723	0	ENST00000369902.3:c.496_542del	p.Pro166GlyfsTer25	p.P166Gfs*25	ENST00000369902	NM_016169.3	166	CCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACAGAg/g																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441815	49441816	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	281	734	2	ENST00000301067.7:c.4168dupG	p.Ala1390GlyfsTer42	p.A1390Gfs*42	ENST00000301067	NM_003482.3	1390	gca/gGca																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89371683	89371683	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	409	813	1	ENST00000301030.4:c.157G>T	p.Glu53Ter	p.E53*	ENST00000301030	NM_001256183.1	53	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	327	757	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578446	7578446	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	393	824	0	ENST00000269305.4:c.484A>T	p.Ile162Phe	p.I162F	ENST00000269305	NM_001126112.2	162	Atc/Ttc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17116988	17116988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	137	713	0	ENST00000285071.4:c.1721C>A	p.Ala574Asp	p.A574D	ENST00000285071	NM_144997.5	574	gCc/gAc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25471001	25471001	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201097136		P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	383	838	2	ENST00000264709.3:c.760G>A	p.Ala254Thr	p.A254T	ENST00000264709	NM_175629.2	254	Gca/Aca																																																																															
XPO1	7514	MSKCC	GRCh37	2	61724103	61724103	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	182	421	0	ENST00000401558.2:c.799T>C	p.Cys267Arg	p.C267R	ENST00000401558	NM_003400.3	267	Tgc/Cgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541001	187541001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	202	465	0	ENST00000441802.2:c.6739C>T	p.His2247Tyr	p.H2247Y	ENST00000441802	NM_005245.3	2247	Cac/Tac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541526	187541526	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	235	505	0	ENST00000441802.2:c.6214G>T	p.Glu2072Ter	p.E2072*	ENST00000441802	NM_005245.3	2072	Gaa/Taa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86629108	86629108	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	44	366	0	ENST00000274376.6:c.853C>G	p.Arg285Gly	p.R285G	ENST00000274376	NM_002890.2	285	Cga/Gga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157525044	157525049	+	missense_variant	Missense_Mutation	ONP	CTTTTG	CTTTTG	TTTTTT			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	174	399	0	ENST00000346085.5:c.4939_4944delinsTTTTTT	p.Leu1647_Leu1648delinsPhePhe	p.L1647_L1648delinsFF	ENST00000346085	NM_020732.3	1647	CTTTTG/TTTTTT																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729798	41729798	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	129	476	0	ENST00000242208.4:c.731G>T	p.Cys244Phe	p.C244F	ENST00000242208	NM_002192.2	244	tGt/tTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971025	21971026	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	180	469	0	ENST00000304494.5:c.332dup	p.Arg112ProfsTer8	p.R112Pfs*8	ENST00000304494	NM_000077.4	111	ggc/ggGc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139820166	139820166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	155	786	0	ENST00000247668.2:c.1319G>A	p.Arg440Gln	p.R440Q	ENST00000247668	NM_021138.3	440	cGg/cAg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0042244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	12	292	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	44	242	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	169	434	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71064794	71064794	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	43	270	0	ENST00000318789.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000318789	NM_032682.5	294	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175672	112175672	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	58	244	0	ENST00000257430.4:c.4381G>T	p.Glu1461Ter	p.E1461*	ENST00000257430	NM_000038.5	1461	Gaa/Taa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28913343	28913343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	214	424	0	ENST00000282397.4:c.2450C>A	p.Ala817Asp	p.A817D	ENST00000282397	NM_002019.4	817	gCc/gAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412002	63412002	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	104	258	0	ENST00000330258.3:c.1165G>T	p.Glu389Ter	p.E389*	ENST00000330258	NM_152424.3	389	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	141	451	0	ENST00000269305.4:c.548C>A	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112174685	112174685	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	22	200	0	ENST00000257430.4:c.3394G>T	p.Glu1132Ter	p.E1132*	ENST00000257430	NM_000038.5	1132	Gaa/Taa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468100	120468100	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	78	492	0	ENST00000256646.2:c.4339G>T	p.Ala1447Ser	p.A1447S	ENST00000256646	NM_024408.3	1447	Gcc/Tcc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88672122	88672122	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	95	430	0	ENST00000372037.3:c.656G>T	p.Gly219Val	p.G219V	ENST00000372037	NM_004329.2	219	gGg/gTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243954	46243954	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	60	289	0	ENST00000334344.6:c.2048G>T	p.Arg683Ile	p.R683I	ENST00000334344	NM_152641.2	683	aGa/aTa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223051	5223051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	85	410	0	ENST00000357368.4:c.2752G>T	p.Ala918Ser	p.A918S	ENST00000357368	NM_002850.3	918	Gcc/Tcc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11024633	11024633	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	54	470	0	ENST00000327064.4:c.750G>C	p.Gln250His	p.Q250H	ENST00000327064	NM_199141.1	250	caG/caC																																																																															
AXL	558	MSKCC	GRCh37	19	41744477	41744477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	138	613	0	ENST00000301178.4:c.1097G>T	p.Gly366Val	p.G366V	ENST00000301178	NM_021913.4	366	gGg/gTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41523716	41523716	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	128	536	0	ENST00000263253.7:c.1132C>A	p.His378Asn	p.H378N	ENST00000263253	NM_001429.3	378	Cac/Aac																																																																															
TSC1	7248	MSKCC	GRCh37	9	135802624	135802624	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	103	229	0	ENST00000298552.3:c.174G>T	p.Leu58Phe	p.L58F	ENST00000298552	NM_001162426.1	58	ttG/ttT																																																																															
ATRX	546	MSKCC	GRCh37	X	76937428	76937428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	77	163	0	ENST00000373344.5:c.3320G>T	p.Cys1107Phe	p.C1107F	ENST00000373344	NM_000489.3	1107	tGt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	336	352	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0042345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	264	570	1	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557201	187557201	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	167	442	0	ENST00000441802.2:c.4161A>G	p.Ile1387Met	p.I1387M	ENST00000441802	NM_005245.3	1387	atA/atG																																																																															
ATM	472	MSKCC	GRCh37	11	108114816	108114817	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	208	403	0	ENST00000278616.4:c.640dupT	p.Ser214PhefsTer40	p.S214Ffs*40	ENST00000278616	NM_000051.3	211	-/T																																																																															
POLE	5426	MSKCC	GRCh37	12	133245077	133245077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	334	652	2	ENST00000320574.5:c.2038C>T	p.Arg680Cys	p.R680C	ENST00000320574	NM_006231.2	680	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	92	473	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944812	31944812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	326	595	0	ENST00000340398.3:c.289G>A	p.Glu97Lys	p.E97K	ENST00000340398	NM_001013699.2	97	Gaa/Aaa																																																																															
CD79A	973	MSKCC	GRCh37	19	42384977	42384977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	276	708	2	ENST00000221972.3:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000221972	NM_021601.3	204	cGg/cAg																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363169	40363169	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2046	248	555	0	ENST00000397332.2:c.1060A>C	p.Ser354Arg	p.S354R	ENST00000397332	NM_001033082.2	354	Agc/Cgc																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250541	26250541	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1266	239	615	0	ENST00000446824.2:c.293A>G	p.Glu98Gly	p.E98G	ENST00000446824	NM_021018.2	98	gAg/gGg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675831	30675831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	302	726	0	ENST00000376406.3:c.2525G>T	p.Arg842Ile	p.R842I	ENST00000376406	NM_014641.2	842	aGa/aTa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680166	30680191	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGTGGAGGCTTGGCTTCTCTCCAG	GTGGTGGAGGCTTGGCTTCTCTCCAG	-			P-0042370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1226	269	692	0	ENST00000376406.3:c.1528_1553del	p.Leu510SerfsTer60	p.L510Sfs*60	ENST00000376406	NM_014641.2	510	CTGGAGAGAAGCCAAGCCTCCACCACa/a																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128321994	128321995	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATG			P-0042370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	270	711	0	ENST00000265960.3:c.763_765dup	p.His255dup	p.H255dup	ENST00000265960	NM_001006617.1	255	-/CAT																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012278-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			945	94	698	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012278-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			926	85	686	0	ENST00000337652.1:c.1561dupC	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115967	8115968	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012278-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			679	71	438	0	ENST00000346208.3:c.1315dup	p.Val439GlyfsTer68	p.V439Gfs*68	ENST00000346208		438	atg/atGg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793345	139793345	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012278-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1189	118	779	0	ENST00000247668.2:c.153C>G	p.His51Gln	p.H51Q	ENST00000247668	NM_021138.3	51	caC/caG																																																																															
ARAF	369	MSKCC	GRCh37	X	47429340	47429340	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012278-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	116	858	0	ENST00000377045.4:c.1468T>G	p.Ser490Ala	p.S490A	ENST00000377045	NM_001654.4	490	Tca/Gca																																																																															
CDH1	999	MSKCC	GRCh37	16	68842433	68842433	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	19	733	0	ENST00000261769.5:c.497delA	p.Asn166MetfsTer49	p.N166Mfs*49	ENST00000261769	NM_004360.3	165	gAa/ga																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0042203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	160	727	0	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
NKX2-1	7080	MSKCC	GRCh37	14	36988348	36988348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	70	520	1	ENST00000354822.5:c.305C>T	p.Ala102Val	p.A102V	ENST00000354822	NM_001079668.2	102	gCg/gTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944391	40944391	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	107	587	0	ENST00000373198.4:c.2111A>T	p.Tyr704Phe	p.Y704F	ENST00000373198	NM_133170.3	704	tAc/tTc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526269	31526269	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	117	979	0	ENST00000344624.3:c.771C>A	p.Asp257Glu	p.D257E	ENST00000344624		257	gaC/gaA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874367	151874367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	12	454	0	ENST00000262189.6:c.8171C>T	p.Thr2724Ile	p.T2724I	ENST00000262189	NM_170606.2	2724	aCa/aTa																																																																															
XIAP	331	MSKCC	GRCh37	X	123020329	123020329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	48	538	0	ENST00000355640.3:c.819del	p.Thr274HisfsTer19	p.T274Hfs*19	ENST00000355640		273	Ggg/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			360	60	280	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0018410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			386	133	605	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971032	21971092	+	frameshift_variant	Frame_Shift_Del	DEL	GCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGC	GCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGC	TGG			P-0018410-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			289	85	495	3	ENST00000304494.5:c.266_326delinsCCA	p.Gly89AlafsTer38	p.G89Afs*38	ENST00000304494	NM_000077.4	89	gGCTTCCTGGACACGCTGGTGGTGCTGCACCGGGCCGGGGCGCGGCTGGACGTGCGCGATGCc/gCCAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577095	7577095	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	40	911	0	ENST00000269305.4:c.843C>G	p.Asp281Glu	p.D281E	ENST00000269305	NM_001126112.2	281	gaC/gaG																																																																															
CARD11	84433	MSKCC	GRCh37	7	2979442	2979442	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			181	17	841	0	ENST00000396946.4:c.805C>G	p.Leu269Val	p.L269V	ENST00000396946	NM_032415.4	269	Ctg/Gtg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206665035	206665035	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			204	17	745	0	ENST00000367120.3:c.1788C>A	p.Cys596Ter	p.C596*	ENST00000367120	NM_014002.3	596	tgC/tgA																																																																															
LMO1	4004	MSKCC	GRCh37	11	8251878	8251878	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			228	44	888	0	ENST00000335790.3:c.199A>T	p.Thr67Ser	p.T67S	ENST00000335790	NM_002315.2	67	Acc/Tcc																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205562	61205562	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			86	15	664	1	ENST00000301761.2:c.347G>T	p.Trp116Leu	p.W116L	ENST00000301761	NM_017841.2	116	tGg/tTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11136184	11136184	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			283	27	838	1	ENST00000344626.4:c.3168G>T	p.Glu1056Asp	p.E1056D	ENST00000344626	NM_003072.3	1056	gaG/gaT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138577	11138577	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			121	15	929	0	ENST00000344626.4:c.3333C>G	p.Ile1111Met	p.I1111M	ENST00000344626	NM_003072.3	1111	atC/atG																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661909	227661909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	21	1011	1	ENST00000305123.5:c.1546G>T	p.Asp516Tyr	p.D516Y	ENST00000305123	NM_005544.2	516	Gat/Tat																																																																															
TOP1	7150	MSKCC	GRCh37	20	39690115	39690115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			94	17	336	0	ENST00000361337.2:c.140C>T	p.Ser47Phe	p.S47F	ENST00000361337	NM_003286.2	47	tCc/tTc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202232	138202232	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			318	29	768	0	ENST00000237289.4:c.2149G>T	p.Ala717Ser	p.A717S	ENST00000237289	NM_001270507.1	717	Gcc/Tcc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636929	176636929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			81	12	781	0	ENST00000439151.2:c.1529G>T	p.Ser510Ile	p.S510I	ENST00000439151	NM_022455.4	510	aGt/aTt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18534815	18534815	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			113	12	613	0	ENST00000266497.5:c.1872+1G>T		p.X624_splice	ENST00000266497		624																																																																																
NF1	4763	MSKCC	GRCh37	17	29562750	29562750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			68	11	549	0	ENST00000358273.4:c.3830G>T	p.Gly1277Val	p.G1277V	ENST00000358273	NM_001042492.2	1277	gGc/gTc																																																																															
INHA	3623	MSKCC	GRCh37	2	220439987	220439987	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			212	20	1122	0	ENST00000243786.2:c.840C>G	p.Ile280Met	p.I280M	ENST00000243786	NM_002191.3	280	atC/atG																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31395666	31395666	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			312	18	749	0	ENST00000328111.2:c.2519G>T	p.Arg840Leu	p.R840L	ENST00000328111	NM_006892.3	840	cGa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0042098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	183	196	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0042098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	47	119	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174406	112174406	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	34	82	0	ENST00000257430.4:c.3115G>T	p.Gly1039Ter	p.G1039*	ENST00000257430	NM_000038.5	1039	Gga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119780	70119781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	110	254	0	ENST00000245479.2:c.788dupG	p.Arg264GlnfsTer32	p.R264Qfs*32	ENST00000245479	NM_000346.3	261	gag/gaGg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609331	81609331	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139286618		P-0042098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	55	71	0	ENST00000298171.2:c.929G>A	p.Arg310His	p.R310H	ENST00000298171	NM_000369.2	310	cGc/cAc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65300245	65300245	+	stop_lost	Nonstop_Mutation	SNP	T	T	G			P-0042098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	25	70	0	ENST00000342505.4:c.3465A>C	p.Ter1155TyrextTer3	p.*1155Yext*3	ENST00000342505	NM_002227.2	1155	taA/taC																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119720895	119720895	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0042098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	29	86	0	ENST00000316626.5:c.280A>G	p.Lys94Glu	p.K94E	ENST00000316626		94	Aag/Gag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151875028	151875028	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	26	76	0	ENST00000262189.6:c.7510C>T	p.Gln2504Ter	p.Q2504*	ENST00000262189	NM_170606.2	2504	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0042105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	102	935	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368202	45368202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	39	323	0	ENST00000262160.6:c.1400C>T	p.Ser467Leu	p.S467L	ENST00000262160	NM_005901.5	467	tCa/tTa																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400934	72400934	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	31	356	0	ENST00000357731.5:c.237T>G	p.Phe79Leu	p.F79L	ENST00000357731	NM_173808.2	79	ttT/ttG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0042118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	136	493	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0042118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	409	742	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
SPEN	23013	MSKCC	GRCh37	1	16264404	16264404	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	397	1104	0	ENST00000375759.3:c.10608del	p.Ser3537ProfsTer11	p.S3537Pfs*11	ENST00000375759	NM_015001.2	3536	cGg/cg																																																																															
CBFB	865	MSKCC	GRCh37	16	67063321	67063339	+	protein_altering_variant	In_Frame_Del	DEL	TCGTGCCCGACCAGAGAAG	TCGTGCCCGACCAGAGAAG	GGCA			P-0042118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	174	598	2	ENST00000412916.2:c.11_29delinsGGCA	p.Val4_Ser10delinsGlyHis	p.V4_S10delinsGH	ENST00000412916		4	gTCGTGCCCGACCAGAGAAGc/gGGCAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853420	151853421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	315	507	0	ENST00000262189.6:c.11681dup	p.Leu3894PhefsTer3	p.L3894Ffs*3	ENST00000262189	NM_170606.2	3894	tta/ttTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0042158-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			164	177	388	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0042158-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			183	127	275	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042158-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	121	552	0	ENST00000324856.7:c.3977dupC	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980849	40980849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042158-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			593	146	621	0	ENST00000373198.4:c.1637G>A	p.Arg546Gln	p.R546Q	ENST00000373198	NM_133170.3	546	cGg/cAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931589		P-0042158-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			465	18	311	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467993	50467993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042158-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			721	160	654	0	ENST00000331340.3:c.1228G>A	p.Gly410Ser	p.G410S	ENST00000331340	NM_006060.4	410	Ggt/Agt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211939	36211939	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042158-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1369	142	1022	0	ENST00000222270.7:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000222270	NM_014727.1	564	Cga/Tga																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72842119	72842119	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042158-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			179	159	293	0	ENST00000325599.8:c.1129A>C	p.Ile377Leu	p.I377L	ENST00000325599	NM_018130.2	377	Ata/Cta																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0042173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	21	847	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912664		P-0042173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	32	901	1	ENST00000269305.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000269305	NM_001126112.2	337	cGc/cAc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0042023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	134	484	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629919	187629919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	150	670	0	ENST00000441802.2:c.1063G>A	p.Val355Met	p.V355M	ENST00000441802	NM_005245.3	355	Gtg/Atg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349025	89349025	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	158	801	0	ENST00000301030.4:c.3925A>G	p.Thr1309Ala	p.T1309A	ENST00000301030	NM_001256183.1	1309	Acg/Gcg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	144	697	1	ENST00000346208.3:c.1275dupA	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873435	151873435	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	88	582	0	ENST00000262189.6:c.9103C>T	p.Gln3035Ter	p.Q3035*	ENST00000262189	NM_170606.2	3035	Caa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432075	49432075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	143	1050	0	ENST00000301067.7:c.9064G>A	p.Asp3022Asn	p.D3022N	ENST00000301067	NM_003482.3	3022	Gat/Aat																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45394702	45394702	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	54	292	0	ENST00000262160.6:c.647A>G	p.Tyr216Cys	p.Y216C	ENST00000262160	NM_005901.5	216	tAt/tGt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0042047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	160	763	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TSC2	7249	MSKCC	GRCh37	16	2108758	2108758	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146854256		P-0042047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	47	660	0	ENST00000219476.3:c.859G>A	p.Glu287Lys	p.E287K	ENST00000219476	NM_000548.3	287	Gag/Aag																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645634	12645634	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0042047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	28	228	0	ENST00000251849.4:c.834+1G>T		p.X278_splice	ENST00000251849	NM_002880.3	278																																																																																
FAT1	2195	MSKCC	GRCh37	4	187517856	187517856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	42	450	0	ENST00000441802.2:c.12838G>A	p.Glu4280Lys	p.E4280K	ENST00000441802	NM_005245.3	4280	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000149-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			108	117	222	0				ENST00000310581	NM_198253.2																																																																																	
SETD2	29072	MSKCC	GRCh37	3	47103692	47103692	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000149-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			950	59	394	0	ENST00000409792.3:c.6254C>G	p.Ser2085Cys	p.S2085C	ENST00000409792	NM_014159.6	2085	tCt/tGt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289023	33289023	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000149-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			496	30	310	0	ENST00000374542.5:c.529C>G	p.Gln177Glu	p.Q177E	ENST00000374542	NM_001141970.1	177	Cag/Gag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106524667	106524667	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000149-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			939	63	250	0	ENST00000359195.3:c.2828G>C	p.Gly943Ala	p.G943A	ENST00000359195	NM_002649.2	943	gGa/gCa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98242871	98242871	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0000149-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			680	47	305	0	ENST00000331920.6:c.747-1G>A		p.X249_splice	ENST00000331920	NM_000264.3	249																																																																																
TSC1	7248	MSKCC	GRCh37	9	135781053	135781053	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000149-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1073	77	560	0	ENST00000298552.3:c.1912G>C	p.Asp638His	p.D638H	ENST00000298552	NM_001162426.1	638	Gat/Cat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32930688	32930688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000149-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			852	83	331	0	ENST00000380152.3:c.7559G>A	p.Arg2520Gln	p.R2520Q	ENST00000380152		2520	cGa/cAa																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1325430	1325430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000149-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			756	131	381	0	ENST00000381566.1:c.245C>T	p.Ser82Leu	p.S82L	ENST00000381566		82	tCg/tTg																																																																															
ATR	545	MSKCC	GRCh37	3	142217613	142217613	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000149-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			623	210	227	1	ENST00000350721.4:c.5384delG	p.Gly1795GlufsTer29	p.G1795Efs*29	ENST00000350721	NM_001184.3	1795	gGa/ga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0000149-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			721	239	527	0	ENST00000269571.5:c.2331_2339dupGGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0000280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			229	140	197	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1315002	1315002	+	downstream_gene_variant	3'Flank	SNP	T	T	C			P-0000280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	48	315	0				ENST00000381566																																																																																		
CRLF2	64109	MSKCC	GRCh37	X	1321289	1321289	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			247	22	197	0	ENST00000381566.1:c.466T>C	p.Phe156Leu	p.F156L	ENST00000381566		156	Ttc/Ctc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162749914	162749914	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			671	116	187	0	ENST00000367921.3:c.2446C>G	p.Gln816Glu	p.Q816E	ENST00000367921	NM_006182.2	816	Caa/Gaa																																																																															
RAF1	5894	MSKCC	GRCh37	3	12641222	12641222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			550	47	415	0	ENST00000251849.4:c.1076C>G	p.Ser359Cys	p.S359C	ENST00000251849	NM_002880.3	359	tCt/tGt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146734	185146734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			464	25	226	0	ENST00000265026.3:c.365G>A	p.Arg122Lys	p.R122K	ENST00000265026	NM_004721.4	122	aGg/aAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0000363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			431	62	361	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578223	7578223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			463	89	431	0	ENST00000269305.4:c.626G>A	p.Arg209Lys	p.R209K	ENST00000269305	NM_001126112.2	209	aGa/aAa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41231365	41231365	+	intron_variant	Intron	SNP	C	C	T			P-0000363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			57	25	48	0	ENST00000357654.3:c.4358-2734G>A		p.*1453*	ENST00000357654	NM_007294.3																																																																																	
KEAP1	9817	MSKCC	GRCh37	19	10610279	10610279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			299	199	327	0	ENST00000171111.5:c.431C>A	p.Ser144Tyr	p.S144Y	ENST00000171111	NM_203500.1	144	tCc/tAc																																																																															
CIC	23152	MSKCC	GRCh37	19	42791250	42791250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			225	150	199	0	ENST00000575354.2:c.310G>A	p.Glu104Lys	p.E104K	ENST00000575354	NM_015125.3	104	Gag/Aag																																																																															
CIC	23152	MSKCC	GRCh37	19	42791373	42791373	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			228	178	247	0	ENST00000575354.2:c.433G>C	p.Glu145Gln	p.E145Q	ENST00000575354	NM_015125.3	145	Gag/Cag																																																																															
CIC	23152	MSKCC	GRCh37	19	42791790	42791790	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	209	230	0	ENST00000575354.2:c.676G>C	p.Asp226His	p.D226H	ENST00000575354	NM_015125.3	226	Gac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7576919	7576919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	103	222	0	ENST00000269305.4:c.927delC	p.Asn310ThrfsTer35	p.N310Tfs*35	ENST00000269305	NM_001126112.2	309	ccC/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576925	7576927	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TGC	TGC	-			P-0000363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	101	219	0	ENST00000269305.4:c.920-1_921delGCA		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
FH	2271	MSKCC	GRCh37	1	241682970	241682970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201887750		P-0000377-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			504	90	721	0	ENST00000366560.3:c.53C>T	p.Pro18Leu	p.P18L	ENST00000366560	NM_000143.3	18	cCa/cTa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	472199	472199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000377-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1184	162	907	0	ENST00000399788.2:c.602C>T	p.Thr201Ile	p.T201I	ENST00000399788	NM_001042603.1	201	aCc/aTc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18747428	18747428	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0000377-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			544	65	355	0	ENST00000266497.5:c.3889A>G	p.Ser1297Gly	p.S1297G	ENST00000266497		1297	Agt/Ggt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000377-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	325	594	0	ENST00000269305.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000269305	NM_001126112.2	105	Ggc/Tgc																																																																															
EP300	2033	MSKCC	GRCh37	22	41573321	41573321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000377-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			781	154	1040	0	ENST00000263253.7:c.5606C>T	p.Pro1869Leu	p.P1869L	ENST00000263253	NM_001429.3	1869	cCc/cTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447340	49447341	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0000377-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			551	98	538	0	ENST00000301067.7:c.757_758delGGinsTT	p.Gly253Leu	p.G253L	ENST00000301067	NM_003482.3	253	GGg/TTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0000580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1303	198	354	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0000580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			654	608	294	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794824	242794824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	418	324	0	ENST00000334409.5:c.385G>T	p.Ala129Ser	p.A129S	ENST00000334409	NM_005018.2	129	Gcc/Tcc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295217	1295217	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0000580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			377	76	120	0				ENST00000310581	NM_198253.2																																																																																	
HGF	3082	MSKCC	GRCh37	7	81381563	81381563	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			761	530	480	0	ENST00000222390.5:c.498C>G	p.Ser166Arg	p.S166R	ENST00000222390	NM_000601.4	166	agC/agG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0000580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	512	270	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29576117	29576117	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			2081	582	475	0	ENST00000358273.4:c.4090G>T	p.Val1364Leu	p.V1364L	ENST00000358273	NM_001042492.2	1364	Gtg/Ttg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438255	56438255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1144	424	294	3	ENST00000407977.2:c.738G>T	p.Arg246Ser	p.R246S	ENST00000407977		246	agG/agT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105618	11105618	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			603	268	279	0	ENST00000344626.4:c.1534G>T	p.Glu512Ter	p.E512*	ENST00000344626	NM_003072.3	512	Gag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101152	41101152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			638	107	167	0	ENST00000373198.4:c.1204C>A	p.Gln402Lys	p.Q402K	ENST00000373198	NM_133170.3	402	Cag/Aag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602581	10602581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	462	193	0	ENST00000171111.5:c.997G>T	p.Gly333Cys	p.G333C	ENST00000171111	NM_203500.1	333	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			162	252	174	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	130	69	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11210250	11210250	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			593	169	199	0	ENST00000361445.4:c.4503G>A	p.Trp1501Ter	p.W1501*	ENST00000361445	NM_004958.3	1501	tgG/tgA																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458573	120458573	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			445	142	153	0	ENST00000256646.2:c.6772G>T	p.Glu2258Ter	p.E2258*	ENST00000256646	NM_024408.3	2258	Gag/Tag																																																																															
AKT3	10000	MSKCC	GRCh37	1	243809239	243809239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			807	669	439	0	ENST00000263826.5:c.385G>T	p.Gly129Ter	p.G129*	ENST00000263826	NM_005465.4	129	Gga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251842	212251842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	180	110	0	ENST00000342788.4:c.3217G>T	p.Ala1073Ser	p.A1073S	ENST00000342788	NM_005235.2	1073	Gct/Tct																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212537899	212537899	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	323	140	0	ENST00000342788.4:c.1706G>T	p.Cys569Phe	p.C569F	ENST00000342788	NM_005235.2	569	tGc/tTc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52597406	52597406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			412	610	424	0	ENST00000394830.3:c.3904G>A	p.Glu1302Lys	p.E1302K	ENST00000394830	NM_018313.4	1302	Gaa/Aaa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643510	52643510	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	446	202	0	ENST00000394830.3:c.2386G>T	p.Glu796Ter	p.E796*	ENST00000394830	NM_018313.4	796	Gag/Tag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55130050	55130050	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	207	320	0	ENST00000257290.5:c.584G>T	p.Gly195Val	p.G195V	ENST00000257290	NM_006206.4	195	gGa/gTa																																																																															
SDHA	6389	MSKCC	GRCh37	5	218480	218480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	48	18	0	ENST00000264932.6:c.10G>T	p.Val4Phe	p.V4F	ENST00000264932	NM_004168.2	4	Gtc/Ttc																																																																															
SDHA	6389	MSKCC	GRCh37	5	235272	235272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			354	88	97	0	ENST00000264932.6:c.1078G>A	p.Glu360Lys	p.E360K	ENST00000264932	NM_004168.2	360	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112179761	112179761	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			181	95	106	0	ENST00000257430.4:c.8470G>C	p.Glu2824Gln	p.E2824Q	ENST00000257430	NM_000038.5	2824	Gaa/Caa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508496	106508496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			73	32	69	0	ENST00000359195.3:c.490G>A	p.Asp164Asn	p.D164N	ENST00000359195	NM_002649.2	164	Gac/Aac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971159	21971159	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			32	46	39	0	ENST00000304494.5:c.199G>T	p.Gly67Cys	p.G67C	ENST00000304494	NM_000077.4	67	Ggc/Tgc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36923427	36923427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	296	190	0	ENST00000358127.4:c.835G>T	p.Ala279Ser	p.A279S	ENST00000358127	NM_001280556.1	279	Gcc/Tcc																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015041	37015041	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			446	161	241	0	ENST00000358127.4:c.363G>C	p.Glu121Asp	p.E121D	ENST00000358127	NM_001280556.1	121	gaG/gaC																																																																															
RAD52	5893	MSKCC	GRCh37	12	1040418	1040418	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			495	399	315	0	ENST00000358495.3:c.154A>T	p.Ile52Leu	p.I52L	ENST00000358495	NM_134424.2	52	Ata/Tta																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435312	49435312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			471	125	176	0	ENST00000301067.7:c.6241G>A	p.Glu2081Lys	p.E2081K	ENST00000301067	NM_003482.3	2081	Gag/Aag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112123	115112123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			505	157	268	0	ENST00000257566.3:c.1617G>T	p.Met539Ile	p.M539I	ENST00000257566	NM_016569.3	539	atG/atT																																																																															
POLE	5426	MSKCC	GRCh37	12	133209090	133209090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			297	112	140	0	ENST00000320574.5:c.6141G>C	p.Met2047Ile	p.M2047I	ENST00000320574	NM_006231.2	2047	atG/atC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906850	32906850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	357	221	0	ENST00000380152.3:c.1235C>T	p.Pro412Leu	p.P412L	ENST00000380152		412	cCc/cTc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73349484	73349484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			505	193	187	0	ENST00000377767.4:c.852C>G	p.Asn284Lys	p.N284K	ENST00000377767	NM_014953.3	284	aaC/aaG																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3790400	3790400	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			275	124	168	0	ENST00000262367.5:c.4133G>T	p.Arg1378Leu	p.R1378L	ENST00000262367	NM_004380.2	1378	cGg/cTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29679408	29679408	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			859	242	263	0	ENST00000358273.4:c.7591C>G	p.Gln2531Glu	p.Q2531E	ENST00000358273	NM_001042492.2	2531	Cag/Gag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243626	41243626	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			852	234	355	0	ENST00000357654.3:c.3922G>T	p.Ala1308Ser	p.A1308S	ENST00000357654	NM_007294.3	1308	Gca/Tca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5207955	5207955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			300	744	393	0	ENST00000357368.4:c.5756G>A	p.Arg1919Gln	p.R1919Q	ENST00000357368	NM_002850.3	1919	cGg/cAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11106898	11106898	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	430	211	0	ENST00000344626.4:c.1603G>T	p.Glu535Ter	p.E535*	ENST00000344626	NM_003072.3	535	Gag/Tag																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867544	45867544	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			267	534	238	0	ENST00000391945.4:c.764C>G	p.Thr255Ser	p.T255S	ENST00000391945	NM_000400.3	255	aCc/aGc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714400	40714400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			709	137	153	0	ENST00000373198.4:c.3997C>A	p.His1333Asn	p.H1333N	ENST00000373198	NM_133170.3	1333	Cac/Aac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929446	44929446	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			396	245	334	0	ENST00000377967.4:c.2546G>T	p.Ser849Ile	p.S849I	ENST00000377967	NM_021140.2	849	aGt/aTt																																																																															
AR	367	MSKCC	GRCh37	X	66766250	66766250	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			254	115	169	0	ENST00000374690.3:c.1262G>T	p.Gly421Val	p.G421V	ENST00000374690	NM_000044.3	421	gGa/gTa																																																																															
MED12	9968	MSKCC	GRCh37	X	70351422	70351422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			666	195	390	0	ENST00000374080.3:c.4070G>T	p.Arg1357Leu	p.R1357L	ENST00000374080		1357	cGc/cTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092740	27092740	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	183	219	1	ENST00000324856.7:c.2765delG	p.Gly922AlafsTer2	p.G922Afs*2	ENST00000324856	NM_006015.4	921	Ggg/gg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004750	150004761	+	inframe_deletion	In_Frame_Del	DEL	GCTGGTGTAATT	GCTGGTGTAATT	-			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	74	170	0	ENST00000253339.5:c.1464_1475delAATTACACCAGC	p.Ile489_Ala492del	p.I489_A492del	ENST00000253339		488	gcAATTACACCAGCt/gct																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347830	347830	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			603	245	417	0	ENST00000262320.3:c.1676delA	p.Gln559ArgfsTer146	p.Q559Rfs*146	ENST00000262320	NM_003502.3	559	cAg/cg																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961575	54961580	+	inframe_deletion	In_Frame_Del	DEL	AACTGG	AACTGG	-			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	70	96	0	ENST00000312783.6:c.52_57delCCAGTT	p.Pro18_Val19del	p.P18_V19del	ENST00000312783	NM_198436.1	18	CCAGTT/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			670	294	371	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			98	43	165	0				ENST00000310581	NM_198253.2																																																																																	
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0000721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			599	187	406	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430441	181430441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	215	434	0	ENST00000325404.1:c.293G>A	p.Arg98Gln	p.R98Q	ENST00000325404	NM_003106.3	98	cGa/cAa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55138642	55138642	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143344944		P-0000721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			291	120	216	0	ENST00000257290.5:c.1319C>T	p.Thr440Met	p.T440M	ENST00000257290	NM_006206.4	440	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0000721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			522	170	271	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			834	22	505	0	ENST00000267101.3:c.310G>C	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ctg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481671	56481671	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	132	317	0	ENST00000267101.3:c.706T>C	p.Ser236Pro	p.S236P	ENST00000267101	NM_001982.3	236	Tca/Cca																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			85	39	197	0				ENST00000310581	NM_198253.2																																																																																	
ARID1A	8289	MSKCC	GRCh37	1	27023220	27023220	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	22	321	0	ENST00000324856.7:c.326C>G	p.Pro109Arg	p.P109R	ENST00000324856	NM_006015.4	109	cCt/cGt																																																																															
BARD1	580	MSKCC	GRCh37	2	215674203	215674203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	84	504	0	ENST00000260947.4:c.91C>T	p.Arg31Cys	p.R31C	ENST00000260947	NM_000465.2	31	Cgc/Tgc																																																																															
TP63	8626	MSKCC	GRCh37	3	189526152	189526152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			216	102	384	1	ENST00000264731.3:c.416C>T	p.Ala139Val	p.A139V	ENST00000264731	NM_003722.4	139	gCg/gTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55948738	55948738	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			285	100	495	0	ENST00000263923.4:c.3727C>G	p.Pro1243Ala	p.P1243A	ENST00000263923	NM_002253.2	1243	Ccg/Gcg																																																																															
KDR	3791	MSKCC	GRCh37	4	55979608	55979608	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	59	509	0	ENST00000263923.4:c.839A>G	p.Gln280Arg	p.Q280R	ENST00000263923	NM_002253.2	280	cAg/cGg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007298	143007298	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	74	519	0	ENST00000262992.4:c.2486C>G	p.Thr829Arg	p.T829R	ENST00000262992	NM_001101669.1	829	aCg/aGg																																																																															
SDHA	6389	MSKCC	GRCh37	5	228312	228312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			76	40	97	0	ENST00000264932.6:c.634G>A	p.Asp212Asn	p.D212N	ENST00000264932	NM_004168.2	212	Gat/Aat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8517911	8517911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			341	63	464	0	ENST00000356435.5:c.1480G>T	p.Ala494Ser	p.A494S	ENST00000356435		494	Gct/Tct																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117365	115117365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			190	218	378	0	ENST00000257566.3:c.809C>A	p.Thr270Lys	p.T270K	ENST00000257566	NM_016569.3	270	aCa/aAa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518719	103518719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			177	37	156	0	ENST00000355739.4:c.2307C>A	p.Phe769Leu	p.F769L	ENST00000355739	NM_000123.3	769	ttC/ttA																																																																															
RBM10	8241	MSKCC	GRCh37	X	47035920	47035920	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			91	111	352	0	ENST00000329236.7:c.367C>T	p.Gln123Ter	p.Q123*	ENST00000329236	NM_001204466.1	123	Cag/Tag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245188	46245188	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			119	154	273	0	ENST00000334344.6:c.3284del	p.Pro1095LeufsTer61	p.P1095Lfs*61	ENST00000334344	NM_152641.2	1094	agC/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577133	7577150	+	inframe_deletion	In_Frame_Del	DEL	TGTTCCGTCCCAGTAGAT	TGTTCCGTCCCAGTAGAT	-			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	74	496	0	ENST00000269305.4:c.788_805del	p.Asn263_Asn268del	p.N263_N268del	ENST00000269305	NM_001126112.2	263	aATCTACTGGGACGGAACAgc/agc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31385044	31385045	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	32	302	0	ENST00000328111.2:c.1430dup	p.Tyr477Ter	p.Y477*	ENST00000328111	NM_006892.3	477	tac/tAac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094330	27094330	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	65	174	0	ENST00000324856.7:c.3038A>T	p.Glu1013Val	p.E1013V	ENST00000324856	NM_006015.4	1013	gAg/gTg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797466	45797466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			277	76	242	0	ENST00000372115.3:c.1011G>T	p.Gln337His	p.Q337H	ENST00000372115	NM_001048171.1	337	caG/caT																																																																															
DDR2	4921	MSKCC	GRCh37	1	162737071	162737071	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			476	221	279	0	ENST00000367921.3:c.1215G>T	p.Leu405Phe	p.L405F	ENST00000367921	NM_006182.2	405	ttG/ttT																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967300	25967300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			368	178	215	2	ENST00000435504.4:c.1906G>A	p.Val636Ile	p.V636I	ENST00000435504		636	Gtc/Atc																																																																															
ALK	238	MSKCC	GRCh37	2	29519873	29519873	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	88	324	0	ENST00000389048.3:c.1698G>C	p.Leu566Phe	p.L566F	ENST00000389048	NM_004304.4	566	ttG/ttC																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251597	212251597	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			517	111	224	0	ENST00000342788.4:c.3462G>T	p.Met1154Ile	p.M1154I	ENST00000342788	NM_005235.2	1154	atG/atT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212587241	212587241	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			460	115	206	0	ENST00000342788.4:c.760G>T	p.Asp254Tyr	p.D254Y	ENST00000342788	NM_005235.2	254	Gac/Tac																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71161758	71161758	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	266	270	0	ENST00000318789.4:c.211C>T	p.Gln71Ter	p.Q71*	ENST00000318789	NM_032682.5	71	Cag/Tag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911585	134911585	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	54	181	0	ENST00000398015.3:c.2050G>T	p.Glu684Ter	p.E684*	ENST00000398015	NM_004441.4	684	Gag/Tag																																																																															
BCL6	604	MSKCC	GRCh37	3	187447122	187447122	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			305	198	216	0	ENST00000232014.4:c.1071G>T	p.Gln357His	p.Q357H	ENST00000232014	NM_001130845.1	357	caG/caT																																																																															
KDR	3791	MSKCC	GRCh37	4	55981071	55981071	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			473	93	229	0	ENST00000263923.4:c.628C>T	p.Gln210Ter	p.Q210*	ENST00000263923	NM_002253.2	210	Cag/Tag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467391	66467391	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	85	167	0	ENST00000273854.3:c.878C>A	p.Ala293Glu	p.A293E	ENST00000273854	NM_004439.5	293	gCa/gAa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143033712	143033712	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	354	364	0	ENST00000262992.4:c.2259G>C	p.Gln753His	p.Q753H	ENST00000262992	NM_001101669.1	753	caG/caC																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576362	67576362	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	91	187	0	ENST00000274335.5:c.641A>T	p.Gln214Leu	p.Q214L	ENST00000274335		214	cAa/cTa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32171648	32171648	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			291	46	270	0	ENST00000375023.3:c.3130G>C	p.Glu1044Gln	p.E1044Q	ENST00000375023	NM_004557.3	1044	Gag/Cag																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004331	150004331	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			651	170	459	0	ENST00000253339.5:c.1894C>G	p.Gln632Glu	p.Q632E	ENST00000253339		632	Caa/Gaa																																																																															
HGF	3082	MSKCC	GRCh37	7	81346592	81346592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			601	158	297	0	ENST00000222390.5:c.1361C>T	p.Thr454Met	p.T454M	ENST00000222390	NM_000601.4	454	aCg/aTg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5078363	5078363	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	106	204	0	ENST00000381652.3:c.2050G>T	p.Glu684Ter	p.E684*	ENST00000381652	NM_004972.3	684	Gaa/Taa																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249612	110249612	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	100	313	0	ENST00000374672.4:c.1063C>G	p.Gln355Glu	p.Q355E	ENST00000374672	NM_004235.4	355	Cag/Gag																																																																															
ABL1	25	MSKCC	GRCh37	9	133747515	133747515	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			291	55	210	0	ENST00000318560.5:c.823-1G>C		p.X275_splice	ENST00000318560	NM_005157.4	275																																																																																
TET1	80312	MSKCC	GRCh37	10	70405353	70405353	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	99	234	0	ENST00000373644.4:c.2867G>C	p.Cys956Ser	p.C956S	ENST00000373644	NM_030625.2	956	tGt/tCt																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154868	2154868	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	52	357	0	ENST00000434045.2:c.353G>T	p.Arg118Leu	p.R118L	ENST00000434045	NM_001127598.1	118	cGc/cTc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67198862	67198862	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	163	181	0	ENST00000312629.5:c.333G>T	p.Lys111Asn	p.K111N	ENST00000312629	NM_003952.2	111	aaG/aaT																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125499297	125499299	+	missense_variant	Missense_Mutation	ONP	TGG	TGG	GGT			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			531	102	265	0	ENST00000428830.2:c.366_368delinsGGT	p.His122_Gly123delinsGlnVal	p.H122_G123delinsQV	ENST00000428830	NM_001114121.2	122	caTGGt/caGGTt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18439825	18439825	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			717	183	281	1	ENST00000266497.5:c.723C>A	p.Ser241Arg	p.S241R	ENST00000266497		241	agC/agA																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18473908	18473908	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			519	138	291	0	ENST00000266497.5:c.1150C>A	p.His384Asn	p.H384N	ENST00000266497		384	Cac/Aac																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945075	31945075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	39	135	0	ENST00000340398.3:c.26G>T	p.Arg9Leu	p.R9L	ENST00000340398	NM_001013699.2	9	cGt/cTt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912617	32912617	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	130	215	0	ENST00000380152.3:c.4125G>T	p.Glu1375Asp	p.E1375D	ENST00000380152		1375	gaG/gaT																																																																															
BRCA2	675	MSKCC	GRCh37	13	32915157	32915157	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			806	128	401	0	ENST00000380152.3:c.6665A>C	p.Tyr2222Ser	p.Y2222S	ENST00000380152		2222	tAc/tCc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929041	32929041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			533	89	241	0	ENST00000380152.3:c.7051G>A	p.Ala2351Thr	p.A2351T	ENST00000380152		2351	Gca/Aca																																																																															
DICER1	23405	MSKCC	GRCh37	14	95590930	95590930	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			418	96	209	0	ENST00000343455.3:c.979A>G	p.Arg327Gly	p.R327G	ENST00000343455	NM_177438.2	327	Aga/Gga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423565	88423565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			493	199	361	0	ENST00000360948.2:c.2270G>T	p.Gly757Val	p.G757V	ENST00000360948	NM_001012338.2	757	gGg/gTg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99456333	99456333	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			297	169	173	0	ENST00000268035.6:c.1650C>G	p.Asn550Lys	p.N550K	ENST00000268035	NM_000875.3	550	aaC/aaG																																																																															
TSC2	7249	MSKCC	GRCh37	16	2103346	2103346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	102	214	0	ENST00000219476.3:c.229G>A	p.Ala77Thr	p.A77T	ENST00000219476	NM_000548.3	77	Gca/Aca																																																																															
TSC2	7249	MSKCC	GRCh37	16	2126522	2126522	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			340	119	413	0	ENST00000219476.3:c.2773G>T	p.Asp925Tyr	p.D925Y	ENST00000219476	NM_000548.3	925	Gat/Tat																																																																															
FANCA	2175	MSKCC	GRCh37	16	89831417	89831417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			285	49	235	0	ENST00000389301.3:c.2659G>A	p.Asp887Asn	p.D887N	ENST00000389301	NM_000135.2	887	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	82	209	0	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45422971	45422971	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			787	232	499	0	ENST00000262160.6:c.157A>G	p.Lys53Glu	p.K53E	ENST00000262160	NM_005901.5	53	Aag/Gag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5218518	5218518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	107	332	0	ENST00000357368.4:c.3961A>T	p.Thr1321Ser	p.T1321S	ENST00000357368	NM_002850.3	1321	Acc/Tcc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278061	18278061	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	21	211	0	ENST00000222254.8:c.1681A>G	p.Asn561Asp	p.N561D	ENST00000222254	NM_005027.3	561	Aac/Gac																																																																															
AXL	558	MSKCC	GRCh37	19	41765564	41765564	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			539	77	388	0	ENST00000301178.4:c.2440C>T	p.Gln814Ter	p.Q814*	ENST00000301178	NM_021913.4	814	Cag/Tag																																																																															
CIC	23152	MSKCC	GRCh37	19	42794446	42794446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			513	183	603	0	ENST00000575354.2:c.1526C>T	p.Pro509Leu	p.P509L	ENST00000575354	NM_015125.3	509	cCa/cTa																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317419	1317419	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			335	72	323	0				ENST00000381566																																																																																		
CRLF2	64109	MSKCC	GRCh37	X	1317481	1317481	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	121	417	0				ENST00000381566																																																																																		
AR	367	MSKCC	GRCh37	X	66766228	66766228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			102	61	110	0	ENST00000374690.3:c.1240C>A	p.Leu414Met	p.L414M	ENST00000374690	NM_000044.3	414	Ctg/Atg																																																																															
ATRX	546	MSKCC	GRCh37	X	76918888	76918888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	220	370	0	ENST00000373344.5:c.4103G>T	p.Gly1368Val	p.G1368V	ENST00000373344	NM_000489.3	1368	gGc/gTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11114034	11114036	+	frameshift_variant	Frame_Shift_Del	DEL	GTC	GTC	TG			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			182	73	223	0	ENST00000344626.4:c.1962_1964delinsTG	p.Arg654SerfsTer120	p.R654Sfs*120	ENST00000344626	NM_003072.3	654	agGTCt/agTGt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942528	17942529	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	34	143	0	ENST00000458235.1:c.2759_2760del	p.Arg920ProfsTer47	p.R920Pfs*47	ENST00000458235	NM_000215.3	920	cGC/c																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31387095	31387095	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	72	268	0	ENST00000328111.2:c.1722del	p.Ile575PhefsTer15	p.I575Ffs*15	ENST00000328111	NM_006892.3	574	Ccc/cc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29095894	29095894	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			686	102	435	0	ENST00000328354.6:c.940del	p.Val314TrpfsTer6	p.V314Wfs*6	ENST00000328354	NM_007194.3	314	Gtg/tg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0000879-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			694	91	336	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TERT	7015	MSKCC	GRCh37	5	1294175	1294175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000879-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	24	238	0	ENST00000310581.5:c.826G>A	p.Ala276Thr	p.A276T	ENST00000310581	NM_198253.2	276	Gcc/Acc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317437	1317437	+	downstream_gene_variant	3'Flank	SNP	G	G	A			P-0000879-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			639	63	487	1				ENST00000381566																																																																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0000894-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	184	340	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55223550	55223550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000894-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			264	215	344	1	ENST00000275493.2:c.917C>T	p.Ser306Leu	p.S306L	ENST00000275493	NM_005228.3	306	tCg/tTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259551	55259551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000894-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	143	270	0	ENST00000275493.2:c.2609A>G	p.His870Arg	p.H870R	ENST00000275493	NM_005228.3	870	cAt/cGt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572002	64572002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000894-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			474	52	646	0	ENST00000337652.1:c.1652C>T	p.Pro551Leu	p.P551L	ENST00000337652	NM_130803.2	551	cCg/cTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244452	46244452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000894-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			491	85	415	0	ENST00000334344.6:c.2546C>T	p.Ala849Val	p.A849V	ENST00000334344	NM_152641.2	849	gCa/gTa																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1314925	1314925	+	downstream_gene_variant	3'Flank	SNP	G	G	A			P-0000894-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1177	610	446	0				ENST00000381566																																																																																		
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001144-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	120	259	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717615	89717615	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001144-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	165	251	0	ENST00000371953.3:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000371953	NM_000314.4	214	Cag/Tag																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741661	17741661	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001144-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	243	304	0	ENST00000250003.3:c.332G>T	p.Arg111Leu	p.R111L	ENST00000250003	NM_002478.4	111	cGc/cTc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2191212	2191212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001144-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	148	480	2	ENST00000398665.3:c.466G>T	p.Asp156Tyr	p.D156Y	ENST00000398665	NM_032482.2	156	Gac/Tac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971166	21971167	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001144-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			119	87	84	0	ENST00000304494.5:c.191dup	p.Leu65AlafsTer55	p.L65Afs*55	ENST00000304494	NM_000077.4	64	ctg/ctTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0001295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	825	449	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0001295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	497	362	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0001295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			152	190	268	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317419	1317419	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0001295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			456	265	364	0				ENST00000381566																																																																																		
APC	324	MSKCC	GRCh37	5	112154942	112154942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	585	352	0	ENST00000257430.4:c.1213C>T	p.Arg405Ter	p.R405*	ENST00000257430	NM_000038.5	405	Cga/Tga																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781895	9781895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			287	33	303	0	ENST00000377346.4:c.2032C>T	p.His678Tyr	p.H678Y	ENST00000377346	NM_005026.3	678	Cac/Tac																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163896	152163896	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	154	349	0	ENST00000206249.3:c.617A>C	p.Lys206Thr	p.K206T	ENST00000206249	NM_000125.3	206	aAg/aCg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5078403	5078403	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	177	303	0	ENST00000381652.3:c.2090T>G	p.Leu697Arg	p.L697R	ENST00000381652	NM_004972.3	697	cTt/cGt																																																																															
RET	5979	MSKCC	GRCh37	10	43600478	43600478	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			509	84	389	0	ENST00000355710.3:c.704A>G	p.Glu235Gly	p.E235G	ENST00000355710	NM_020975.4	235	gAg/gGg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41400097	41400097	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			741	170	275	0	ENST00000373198.4:c.662A>C	p.Gln221Pro	p.Q221P	ENST00000373198	NM_133170.3	221	cAg/cCg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589609	67589611	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0001295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			244	79	225	0	ENST00000274335.5:c.1372_1374del	p.Glu458del	p.E458del	ENST00000274335		458	GAA/-																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974723	21974723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001352-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	88	386	0	ENST00000304494.5:c.104G>T	p.Gly35Val	p.G35V	ENST00000304494	NM_000077.4	35	gGg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578189	7578189	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0001352-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			660	244	503	2	ENST00000269305.4:c.660T>G	p.Tyr220Ter	p.Y220*	ENST00000269305	NM_001126112.2	220	taT/taG																																																																															
NF1	4763	MSKCC	GRCh37	17	29557369	29557369	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001352-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			581	175	233	0	ENST00000358273.4:c.3082G>T	p.Asp1028Tyr	p.D1028Y	ENST00000358273	NM_001042492.2	1028	Gac/Tac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971162	21971172	+	protein_altering_variant	In_Frame_Del	DEL	GGAGCAGCAGC	GGAGCAGCAGC	AG			P-0001352-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			141	38	74	0	ENST00000304494.5:c.186_196delinsCT	p.Leu63_His66delinsTyr	p.L63_H66delinsY	ENST00000304494	NM_000077.4	62	ctGCTGCTGCTCCac/ctCTac																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001354-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			182	10	97	0				ENST00000310581	NM_198253.2																																																																																	
CDKN1A	1026	MSKCC	GRCh37	6	36652198	36652199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001354-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			730	45	285	0	ENST00000244741.5:c.322dup	p.Glu108GlyfsTer21	p.E108Gfs*21	ENST00000244741	NM_000389.4	107	gag/gaGg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001680-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	77	156	0				ENST00000310581	NM_198253.2																																																																																	
KMT2D	8085	MSKCC	GRCh37	12	49433394	49433394	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001680-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	56	216	0	ENST00000301067.7:c.8053C>T	p.Arg2685Ter	p.R2685*	ENST00000301067	NM_003482.3	2685	Cga/Tga																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22127164	22127164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001680-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			690	159	451	0	ENST00000215832.6:c.964G>A	p.Glu322Lys	p.E322K	ENST00000215832	NM_002745.4	322	Gag/Aag																																																																															
REL	5966	MSKCC	GRCh37	2	61145398	61145398	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001680-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	98	376	1	ENST00000295025.8:c.608A>G	p.Glu203Gly	p.E203G	ENST00000295025	NM_002908.2	203	gAa/gGa																																																																															
CASP8	841	MSKCC	GRCh37	2	202136258	202136258	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001680-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			505	144	435	0	ENST00000358485.4:c.502T>C	p.Ser168Pro	p.S168P	ENST00000358485	NM_001080125.1	168	Tca/Cca																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001680-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			613	123	465	1	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589586	67589591	+	inframe_deletion	In_Frame_Del	DEL	ATGAAT	ATGAAT	-			P-0001680-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			233	55	336	2	ENST00000274335.5:c.1351_1356del	p.Glu451_Tyr452del	p.E451_Y452del	ENST00000274335		450	cATGAATat/cat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974782	21974783	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CAGT			P-0001680-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	173	211	0	ENST00000304494.5:c.41_44dup	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tgg/tgACTGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	262	702	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857784	9857784	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145861983		P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			458	260	727	0	ENST00000330684.3:c.3617G>A	p.Arg1206Gln	p.R1206Q	ENST00000330684	NM_001134407.1	1206	cGa/cAa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967065	25967065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	298	608	0	ENST00000435504.4:c.2141G>T	p.Ser714Ile	p.S714I	ENST00000435504		714	aGt/aTt																																																																															
ALK	238	MSKCC	GRCh37	2	29498275	29498275	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	162	465	0	ENST00000389048.3:c.1905C>A	p.Tyr635Ter	p.Y635*	ENST00000389048	NM_004304.4	635	taC/taA																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566718	212566718	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			581	243	605	0	ENST00000342788.4:c.1463G>T	p.Arg488Leu	p.R488L	ENST00000342788	NM_005235.2	488	cGg/cTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			550	135	596	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217236	66217236	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			351	309	554	0	ENST00000273854.3:c.2379C>A	p.Asp793Glu	p.D793E	ENST00000273854	NM_004439.5	793	gaC/gaA																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111651	56111651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	49	117	0	ENST00000399503.3:c.251C>T	p.Pro84Leu	p.P84L	ENST00000399503	NM_005921.1	84	cCg/cTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389366	8389366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	199	660	0	ENST00000356435.5:c.4252G>T	p.Gly1418Trp	p.G1418W	ENST00000356435		1418	Ggg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs760640852		P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			99	70	105	0	ENST00000304494.5:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000304494	NM_000077.4	74	Gac/Tac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109819	115109819	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	60	350	0	ENST00000257566.3:c.2059G>C	p.Asp687His	p.D687H	ENST00000257566	NM_016569.3	687	Gac/Cac																																																																															
FLT1	2321	MSKCC	GRCh37	13	29004289	29004289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	172	575	0	ENST00000282397.4:c.1004C>A	p.Thr335Asn	p.T335N	ENST00000282397	NM_002019.4	335	aCt/aAt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81557474	81557474	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			633	139	717	0	ENST00000298171.2:c.454A>G	p.Ile152Val	p.I152V	ENST00000298171	NM_000369.2	152	Ata/Gta																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858060	9858060	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			659	59	790	0	ENST00000330684.3:c.3341G>C	p.Arg1114Thr	p.R1114T	ENST00000330684	NM_001134407.1	1114	aGa/aCa																																																																															
CD79B	974	MSKCC	GRCh37	17	62007210	62007210	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			845	90	510	0	ENST00000392795.3:c.472C>G	p.Leu158Val	p.L158V	ENST00000392795	NM_001039933.1	158	Ctg/Gtg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39637845	39637845	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			647	47	545	0	ENST00000262039.4:c.2264-2A>T		p.X755_splice	ENST00000262039	NM_002647.2	755																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48604710	48604710	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			537	128	606	0	ENST00000342988.3:c.1532C>G	p.Pro511Arg	p.P511R	ENST00000342988	NM_005359.5	511	cCg/cGg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610198	10610198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	510	759	0	ENST00000171111.5:c.512G>T	p.Cys171Phe	p.C171F	ENST00000171111	NM_203500.1	171	tGc/tTc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245114	53245114	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			496	237	732	0	ENST00000375401.3:c.826G>T	p.Glu276Ter	p.E276*	ENST00000375401	NM_004187.3	276	Gag/Tag																																																																															
STAG2	10735	MSKCC	GRCh37	X	123200274	123200274	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			808	211	756	0	ENST00000218089.9:c.2253C>G	p.Ser751Arg	p.S751R	ENST00000218089	NM_001042749.1	751	agC/agG																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101557	27101558	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	TT			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			691	131	709	0	ENST00000324856.7:c.4839_4840delinsTT	p.Met1613_Gln1614delinsIleTer	p.M1613_Q1614delinsI*	ENST00000324856	NM_006015.4	1613	atGCag/atTTag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002068-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			564	333	479	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0002068-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	109	191	0				ENST00000310581	NM_198253.2																																																																																	
GRIN2A	2903	MSKCC	GRCh37	16	9858356	9858356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002068-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			390	94	351	0	ENST00000330684.3:c.3045G>T	p.Lys1015Asn	p.K1015N	ENST00000330684	NM_001134407.1	1015	aaG/aaT																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123480538	123480538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002068-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			514	86	404	0	ENST00000371139.4:c.46G>A	p.Gly16Ser	p.G16S	ENST00000371139	NM_001114937.2	16	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	AA			P-0002068-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	129	398	0	ENST00000257430.4:c.2804_2805insAA	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAAac																																																																															
APC	324	MSKCC	GRCh37	5	112175779	112175788	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAGATGGA	TCCAGATGGA	-			P-0002068-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	118	359	0	ENST00000257430.4:c.4489_4498del	p.Pro1497PhefsTer7	p.P1497Ffs*7	ENST00000257430	NM_000038.5	1496	acTCCAGATGGA/ac																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518261	204518261	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1098	193	478	0	ENST00000367182.3:c.924A>T	p.Glu308Asp	p.E308D	ENST00000367182	NM_001278516.1	308	gaA/gaT																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505492	25505492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			978	257	567	1	ENST00000264709.3:c.266C>G	p.Pro89Arg	p.P89R	ENST00000264709	NM_175629.2	89	cCc/cGc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25994400	25994400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			947	242	505	0	ENST00000435504.4:c.413C>A	p.Ser138Tyr	p.S138Y	ENST00000435504		138	tCc/tAc																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158719	26158719	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			299	48	148	0	ENST00000289316.2:c.322G>C	p.Ala108Pro	p.A108P	ENST00000289316	NM_138720.2	108	Gcc/Ccc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946195	13946195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			817	168	392	0	ENST00000405192.2:c.901C>T	p.Arg301Trp	p.R301W	ENST00000405192	NM_001163147.1	301	Cgg/Tgg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468045	50468045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			775	143	342	0	ENST00000331340.3:c.1280C>T	p.Ser427Leu	p.S427L	ENST00000331340	NM_006060.4	427	tCg/tTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81386575	81386575	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1079	315	550	0	ENST00000222390.5:c.412G>T	p.Gly138Ter	p.G138*	ENST00000222390	NM_000601.4	138	Gga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151917668	151917668	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	136	240	0	ENST00000262189.6:c.3652C>G	p.Gln1218Glu	p.Q1218E	ENST00000262189	NM_170606.2	1218	Cag/Gag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499832	8499832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			767	207	467	0	ENST00000356435.5:c.2137G>T	p.Gly713Cys	p.G713C	ENST00000356435		713	Ggt/Tgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913385		P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	127	192	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																															
WT1	7490	MSKCC	GRCh37	11	32456810	32456810	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			374	97	205	0	ENST00000332351.3:c.82C>A	p.Pro28Thr	p.P28T	ENST00000332351	NM_024426.4	28	Cca/Aca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912252	32912252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			867	134	491	0	ENST00000380152.3:c.3760G>A	p.Glu1254Lys	p.E1254K	ENST00000380152		1254	Gag/Aag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138048	2138048	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			592	225	376	0	ENST00000219476.3:c.5069-1G>C		p.X1690_splice	ENST00000219476	NM_000548.3	1690																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3778472	3778472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	239	494	0	ENST00000262367.5:c.6576G>A	p.Met2192Ile	p.M2192I	ENST00000262367	NM_004380.2	2192	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			575	217	412	0	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																															
NF1	4763	MSKCC	GRCh37	17	29509683	29509683	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			761	215	373	0	ENST00000358273.4:c.888G>C	p.Lys296Asn	p.K296N	ENST00000358273	NM_001042492.2	296	aaG/aaC																																																																															
BRCA1	672	MSKCC	GRCh37	17	41226474	41226474	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1012	306	509	0	ENST00000357654.3:c.4549C>G	p.Leu1517Val	p.L1517V	ENST00000357654	NM_007294.3	1517	Ctt/Gtt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034482	47034482	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			930	121	497	0	ENST00000329236.7:c.336A>T	p.Glu112Asp	p.E112D	ENST00000329236	NM_001204466.1	112	gaA/gaT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038529	47038529	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			861	150	597	0	ENST00000329236.7:c.460G>T	p.Glu154Ter	p.E154*	ENST00000329236	NM_001204466.1	154	Gag/Tag																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652285	48652285	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1052	127	633	0	ENST00000376670.3:c.956C>G	p.Ser319Cys	p.S319C	ENST00000376670	NM_002049.3	319	tCc/tGc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688743	47688744	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCG			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1133	274	469	0	ENST00000347630.2:c.553_556dup	p.Leu186ProfsTer5	p.L186Pfs*5	ENST00000347630	NM_001007230.1	186	ctg/cCGGCtg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602290	10602306	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCGACGGCATAGATG	CGCCGACGGCATAGATG	-			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			475	158	404	0	ENST00000171111.5:c.1272_1288del	p.His424GlnfsTer15	p.H424Qfs*15	ENST00000171111	NM_203500.1	424	caCATCTATGCCGTCGGCGgc/cagc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0002403-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			582	184	262	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0002403-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			746	138	435	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002403-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	54	90	0	ENST00000304494.5:c.322G>C	p.Asp108His	p.D108H	ENST00000304494	NM_000077.4	108	Gat/Cat																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663036	227663036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002403-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			472	101	270	0	ENST00000305123.5:c.419C>T	p.Ser140Phe	p.S140F	ENST00000305123	NM_005544.2	140	tCc/tTc																																																																															
ATR	545	MSKCC	GRCh37	3	142215964	142215964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002403-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			815	108	370	0	ENST00000350721.4:c.5629C>G	p.Gln1877Glu	p.Q1877E	ENST00000350721	NM_001184.3	1877	Caa/Gaa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636899	176636899	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002403-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			676	105	310	0	ENST00000439151.2:c.1499G>C	p.Arg500Thr	p.R500T	ENST00000439151	NM_022455.4	500	aGa/aCa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246748	41246748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002403-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1056	129	426	0	ENST00000357654.3:c.800C>T	p.Ser267Leu	p.S267L	ENST00000357654	NM_007294.3	267	tCa/tTa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760719	59760719	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TTG			P-0002403-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1115	167	574	0	ENST00000259008.2:c.3688delinsCAA	p.Glu1230GlnfsTer3	p.E1230Qfs*3	ENST00000259008	NM_032043.2	1230	Gaa/CAAaa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0002540-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	41	255	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0002540-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			833	19	378	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0002540-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1069	76	472	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
APC	324	MSKCC	GRCh37	5	112174086	112174086	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002540-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1000	83	459	0	ENST00000257430.4:c.2795C>G	p.Ser932Ter	p.S932*	ENST00000257430	NM_000038.5	932	tCa/tGa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	463301	463301	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002540-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1358	76	658	0	ENST00000399788.2:c.970A>T	p.Ile324Phe	p.I324F	ENST00000399788	NM_001042603.1	324	Att/Ttt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969417	44969417	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370298215		P-0002540-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			645	118	317	0	ENST00000377967.4:c.4099G>A	p.Gly1367Arg	p.G1367R	ENST00000377967	NM_021140.2	1367	Gga/Aga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120252	70120252	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002540-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1028	104	522	1	ENST00000245479.2:c.1254del	p.Ile418MetfsTer52	p.I418Mfs*52	ENST00000245479	NM_000346.3	418	atC/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0002540-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1228	105	535	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002546-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			121	25	204	0				ENST00000310581	NM_198253.2																																																																																	
TSHR	7253	MSKCC	GRCh37	14	81610484	81610484	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002546-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	55	617	0	ENST00000298171.2:c.2082C>G	p.Ser694Arg	p.S694R	ENST00000298171	NM_000369.2	694	agC/agG																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546721	9546721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002546-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			216	46	430	0	ENST00000353224.5:c.1301C>T	p.Ala434Val	p.A434V	ENST00000353224	NM_177990.2	434	gCg/gTg																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412045	+	splice_donor_variant	Splice_Site	INS	-	-	A			P-0002546-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			157	89	327	0	ENST00000397752.3:c.3028+1_3028+2insA		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002613-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	19	109	0				ENST00000310581	NM_198253.2																																																																																	
NF1	4763	MSKCC	GRCh37	17	29552144	29552144	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	182	369	1	ENST00000358273.4:c.1882delT	p.Tyr628ThrfsTer3	p.Y628Tfs*3	ENST00000358273	NM_001042492.2	626	cTt/ct																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	163	406	2	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692887	89692887	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660535		P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			295	21	197	0	ENST00000371953.3:c.371G>A	p.Cys124Tyr	p.C124Y	ENST00000371953	NM_000314.4	124	tGt/tAt																																																																															
IRF4	3662	MSKCC	GRCh37	6	407575	407575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			518	228	410	0	ENST00000380956.4:c.1333C>T	p.Arg445Cys	p.R445C	ENST00000380956	NM_001195286.1	445	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427975	49427975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			741	197	428	0	ENST00000301067.7:c.10615C>T	p.Arg3539Trp	p.R3539W	ENST00000301067	NM_003482.3	3539	Cgg/Tgg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784393	9784393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	199	375	0	ENST00000377346.4:c.2778C>A	p.Asn926Lys	p.N926K	ENST00000377346	NM_005026.3	926	aaC/aaA																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843595	156843595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139875058		P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			503	231	461	0	ENST00000524377.1:c.1021G>A	p.Val341Met	p.V341M	ENST00000524377	NM_002529.3	341	Gtg/Atg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467037	25467037	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	122	326	0	ENST00000264709.3:c.1838A>T	p.His613Leu	p.H613L	ENST00000264709	NM_175629.2	613	cAc/cTc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26022268	26022268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	222	459	1	ENST00000435504.4:c.389G>A	p.Arg130Lys	p.R130K	ENST00000435504		130	aGg/aAg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660972	227660972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			518	41	365	0	ENST00000305123.5:c.2483G>A	p.Ser828Asn	p.S828N	ENST00000305123	NM_005544.2	828	aGc/aAc																																																																															
RHOA	387	MSKCC	GRCh37	3	49412913	49412913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			575	241	436	0	ENST00000418115.1:c.110C>T	p.Thr37Ile	p.T37I	ENST00000418115	NM_001664.2	37	aCa/aTa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441246	52441246	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			533	31	352	1	ENST00000460680.1:c.524C>A	p.Pro175His	p.P175H	ENST00000460680	NM_004656.3	175	cCt/cAt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259497	89259497	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	175	356	0	ENST00000336596.2:c.641A>G	p.Asp214Gly	p.D214G	ENST00000336596	NM_005233.5	214	gAc/gGc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185161339	185161339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			533	161	414	0	ENST00000265026.3:c.766C>A	p.Leu256Ile	p.L256I	ENST00000265026	NM_004721.4	256	Cta/Ata																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55151595	55151595	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			518	194	422	0	ENST00000257290.5:c.2381A>T	p.Asp794Val	p.D794V	ENST00000257290	NM_006206.4	794	gAt/gTt																																																																															
KIT	3815	MSKCC	GRCh37	4	55564731	55564731	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			285	125	270	0	ENST00000288135.5:c.619G>T	p.Ala207Ser	p.A207S	ENST00000288135	NM_000222.2	207	Gcc/Tcc																																																																															
KDR	3791	MSKCC	GRCh37	4	55981203	55981203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	128	326	0	ENST00000263923.4:c.496C>T	p.Pro166Ser	p.P166S	ENST00000263923	NM_002253.2	166	Cca/Tca																																																																															
TET2	54790	MSKCC	GRCh37	4	106193857	106193857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			485	28	346	0	ENST00000380013.4:c.4319G>A	p.Arg1440Gln	p.R1440Q	ENST00000380013	NM_001127208.2	1440	cGg/cAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557879	187557879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			480	213	469	0	ENST00000441802.2:c.3832G>A	p.Asp1278Asn	p.D1278N	ENST00000441802	NM_005245.3	1278	Gac/Aac																																																																															
TERT	7015	MSKCC	GRCh37	5	1260664	1260664	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	201	373	0	ENST00000310581.5:c.2895G>T	p.Lys965Asn	p.K965N	ENST00000310581	NM_198253.2	965	aaG/aaT																																																																															
RAD50	10111	MSKCC	GRCh37	5	131923636	131923636	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	110	288	0	ENST00000265335.6:c.906G>T	p.Glu302Asp	p.E302D	ENST00000265335		302	gaG/gaT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187516	32187516	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	145	276	0	ENST00000375023.3:c.1363A>C	p.Thr455Pro	p.T455P	ENST00000375023	NM_004557.3	455	Act/Cct																																																																															
PIM1	5292	MSKCC	GRCh37	6	37138608	37138608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	165	384	0	ENST00000373509.5:c.142G>A	p.Gly48Ser	p.G48S	ENST00000373509	NM_002648.3	48	Ggc/Agc																																																																															
CCND3	896	MSKCC	GRCh37	6	41903728	41903728	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	185	351	0	ENST00000372991.4:c.829G>T	p.Gly277Trp	p.G277W	ENST00000372991	NM_001760.3	277	Ggg/Tgg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023045	150023045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			491	222	445	0	ENST00000253339.5:c.218C>T	p.Thr73Met	p.T73M	ENST00000253339		73	aCg/aTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157222585	157222585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			405	215	355	0	ENST00000346085.5:c.1852C>T	p.Pro618Ser	p.P618S	ENST00000346085	NM_020732.3	618	Ccg/Tcg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367344	50367344	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	156	191	0	ENST00000331340.3:c.151A>G	p.Arg51Gly	p.R51G	ENST00000331340	NM_006060.4	51	Aga/Gga																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285764	87285764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			499	200	441	0	ENST00000277120.3:c.101C>T	p.Thr34Met	p.T34M	ENST00000277120		34	aCg/aTg																																																																															
SYK	6850	MSKCC	GRCh37	9	93607851	93607851	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	138	379	0	ENST00000375746.1:c.553G>T	p.Gly185Ter	p.G185*	ENST00000375746	NM_001174167.1	185	Gga/Tga																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139404214	139404214	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	175	277	0	ENST00000277541.6:c.2940T>A	p.Cys980Ter	p.C980*	ENST00000277541	NM_017617.3	980	tgT/tgA																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741576	17741576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			157	126	129	3	ENST00000250003.3:c.247G>A	p.Ala83Thr	p.A83T	ENST00000250003	NM_002478.4	83	Gcg/Acg																																																																															
YAP1	10413	MSKCC	GRCh37	11	102098220	102098220	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			349	161	287	0	ENST00000282441.5:c.1184A>G	p.Asp395Gly	p.D395G	ENST00000282441	NM_001130145.2	395	gAt/gGt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343634	118343634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			349	146	283	0	ENST00000534358.1:c.1760C>A	p.Pro587His	p.P587H	ENST00000534358	NM_005933.3	587	cCt/cAt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344619	118344619	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			410	206	414	0	ENST00000534358.1:c.2745G>T	p.Lys915Asn	p.K915N	ENST00000534358	NM_005933.3	915	aaG/aaT																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025645	1025645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			278	139	316	0	ENST00000358495.3:c.730C>A	p.Leu244Met	p.L244M	ENST00000358495	NM_134424.2	244	Ctg/Atg																																																																															
CCND2	894	MSKCC	GRCh37	12	4383294	4383294	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			467	42	342	0	ENST00000261254.3:c.88C>A	p.Leu30Met	p.L30M	ENST00000261254	NM_001759.3	30	Ctg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438725	49438725	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			421	341	333	0	ENST00000301067.7:c.4765G>T	p.Gly1589Cys	p.G1589C	ENST00000301067	NM_003482.3	1589	Ggt/Tgt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929168	32929168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			514	294	467	0	ENST00000380152.3:c.7178T>C	p.Met2393Thr	p.M2393T	ENST00000380152		2393	aTg/aCg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			342	142	391	0	ENST00000330684.3:c.4021A>G	p.Ser1341Gly	p.S1341G	ENST00000330684	NM_001134407.1	1341	Agc/Ggc																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110498	8110498	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			390	29	284	0	ENST00000585124.1:c.394C>A	p.Leu132Met	p.L132M	ENST00000585124	NM_004217.3	132	Ctg/Atg																																																																															
NF1	4763	MSKCC	GRCh37	17	29562747	29562747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	188	353	0	ENST00000358273.4:c.3827G>A	p.Arg1276Gln	p.R1276Q	ENST00000358273	NM_001042492.2	1276	cGa/cAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29654674	29654674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			548	36	386	0	ENST00000358273.4:c.5426C>T	p.Pro1809Leu	p.P1809L	ENST00000358273	NM_001042492.2	1809	cCg/cTg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530035	63530035	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			475	193	381	0	ENST00000307078.5:c.2400T>A	p.Asn800Lys	p.N800K	ENST00000307078	NM_004655.3	800	aaT/aaA																																																																															
STK11	6794	MSKCC	GRCh37	19	1206955	1206955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	97	236	0	ENST00000326873.7:c.43G>A	p.Gly15Ser	p.G15S	ENST00000326873	NM_000455.4	15	Ggc/Agc																																																																															
GNA11	2767	MSKCC	GRCh37	19	3119228	3119228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			418	175	425	0	ENST00000078429.4:c.760C>A	p.Leu254Met	p.L254M	ENST00000078429	NM_002067.2	254	Ctg/Atg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105557	11105557	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			403	186	373	2	ENST00000344626.4:c.1473A>T	p.Arg491Ser	p.R491S	ENST00000344626	NM_003072.3	491	agA/agT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152139	11152139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			463	208	388	4	ENST00000344626.4:c.4327C>T	p.Arg1443Cys	p.R1443C	ENST00000344626	NM_003072.3	1443	Cgc/Tgc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39744945	39744945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			499	36	376	0	ENST00000361337.2:c.1735G>T	p.Asp579Tyr	p.D579Y	ENST00000361337	NM_003286.2	579	Gat/Tat																																																																															
GNAS	2778	MSKCC	GRCh37	20	57480483	57480483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	101	242	0	ENST00000371085.3:c.478C>T	p.Arg160Cys	p.R160C	ENST00000371085	NM_000516.4	160	Cgt/Tgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			665	35	380	0	ENST00000371085.3:c.601C>A	p.Arg201Ser	p.R201S	ENST00000371085	NM_000516.4	201	Cgt/Agt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44921916	44921916	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	218	428	0	ENST00000377967.4:c.1450A>G	p.Arg484Gly	p.R484G	ENST00000377967	NM_021140.2	484	Aga/Gga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006867	47006867	+	5_prime_UTR_variant	5'UTR	SNP	G	G	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			476	231	423	1	ENST00000329236.7:c.-14G>T		p.*5*	ENST00000329236	NM_001204466.1																																																																																	
RBM10	8241	MSKCC	GRCh37	X	47030585	47030585	+	intron_variant	Intron	SNP	T	T	G			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	145	363	2	ENST00000329236.7:c.201+1688T>G		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
ALK	238	MSKCC	GRCh37	2	29446222	29446223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	188	337	2	ENST00000389048.3:c.3344dup	p.Asn1115LysfsTer18	p.N1115Kfs*18	ENST00000389048	NM_004304.4	1115	aac/aaAc																																																																															
ATR	545	MSKCC	GRCh37	3	142268379	142268380	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	156	349	0	ENST00000350721.4:c.3112dup	p.Ser1038PhefsTer11	p.S1038Ffs*11	ENST00000350721	NM_001184.3	1038	tct/tTct																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534473	187534473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	160	271	0	ENST00000441802.2:c.9253delC	p.Asp3086IlefsTer30	p.D3086Ifs*30	ENST00000441802	NM_005245.3	3085	Ctt/tt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259555	55259557	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			314	122	245	0	ENST00000275493.2:c.2615_2617del	p.Glu872del	p.E872del	ENST00000275493	NM_005228.3	871	gcAGAa/gca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874012	151874013	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			665	43	459	1	ENST00000262189.6:c.8525dup	p.Asn2842LysfsTer2	p.N2842Kfs*2	ENST00000262189	NM_170606.2	2842	aat/aaAt																																																																															
SYK	6850	MSKCC	GRCh37	9	93607816	93607817	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			465	151	378	0	ENST00000375746.1:c.522_523del	p.Arg175GlyfsTer4	p.R175Gfs*4	ENST00000375746	NM_001174167.1	173	aTC/a																																																																															
FANCC	2176	MSKCC	GRCh37	9	97912207	97912208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	190	344	0	ENST00000289081.3:c.683dup	p.Leu228PhefsTer24	p.L228Ffs*24	ENST00000289081	NM_000136.2	228	ttg/ttTg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274647	123274648	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			416	138	314	0	ENST00000358487.5:c.1270dup	p.Leu424ProfsTer10	p.L424Pfs*10	ENST00000358487	NM_000141.4	424	ctg/cCtg																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154242	2154242	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	167	442	3	ENST00000434045.2:c.686delC	p.Pro229GlnfsTer27	p.P229Qfs*27	ENST00000434045	NM_001127598.1	229	cCa/ca																																																																															
ETV6	2120	MSKCC	GRCh37	12	11992227	11992229	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	109	268	0	ENST00000396373.4:c.320_322del	p.Pro107del	p.P107del	ENST00000396373	NM_001987.4	106	tCTCct/tct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433979	49433979	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	250	266	0	ENST00000301067.7:c.7574del	p.Gly2525ValfsTer18	p.G2525Vfs*18	ENST00000301067	NM_003482.3	2525	gGt/gt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448407	49448408	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			612	172	386	0	ENST00000301067.7:c.303dup	p.Ser102GlufsTer6	p.S102Efs*6	ENST00000301067	NM_003482.3	101	-/G																																																																															
POLE	5426	MSKCC	GRCh37	12	133238183	133238184	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			625	170	433	0	ENST00000320574.5:c.2793dup	p.Glu932Ter	p.E932*	ENST00000320574	NM_006231.2	931	-/T																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647483	23647483	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	150	387	1	ENST00000261584.4:c.384del	p.His130ThrfsTer47	p.H130Tfs*47	ENST00000261584	NM_024675.3	128	ttT/tt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			352	159	331	3	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39623699	39623700	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	180	331	0	ENST00000262039.4:c.2112dup	p.Arg705Ter	p.R705*	ENST00000262039	NM_002647.2	702	-/T																																																																															
AXL	558	MSKCC	GRCh37	19	41727909	41727909	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	206	430	0	ENST00000301178.4:c.538del	p.Leu180TrpfsTer18	p.L180Wfs*18	ENST00000301178	NM_021913.4	178	gtC/gt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913179	39913179	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			496	218	418	2	ENST00000378444.4:c.4936delC	p.Leu1646SerfsTer28	p.L1646Sfs*28	ENST00000378444	NM_001123385.1	1646	Ctc/tc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024032	27024032	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			39	10	26	0	ENST00000324856.7:c.1137+1G>A		p.X379_splice	ENST00000324856	NM_006015.4	379																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27097658	27097658	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			342	98	311	0	ENST00000324856.7:c.3247G>T	p.Gly1083Cys	p.G1083C	ENST00000324856	NM_006015.4	1083	Ggc/Tgc																																																																															
MPL	4352	MSKCC	GRCh37	1	43812580	43812580	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			300	81	299	0	ENST00000372470.3:c.1283C>G	p.Thr428Arg	p.T428R	ENST00000372470	NM_005373.2	428	aCa/aGa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175826	176175826	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			69	95	115	0	ENST00000367669.3:c.289G>T	p.Ala97Ser	p.A97S	ENST00000367669	NM_022457.5	97	Gcc/Tcc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665045	138665045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			26	32	22	0	ENST00000330315.3:c.520G>A	p.Gly174Ser	p.G174S	ENST00000330315	NM_023067.3	174	Ggc/Agc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683669	162683669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	278	286	0	ENST00000366898.1:c.300G>T	p.Gln100His	p.Q100H	ENST00000366898	NM_004562.2	100	caG/caT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55269467	55269467	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			340	187	294	0	ENST00000275493.2:c.3154A>G	p.Arg1052Gly	p.R1052G	ENST00000275493	NM_005228.3	1052	Aga/Gga																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508619	106508619	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			252	128	197	0	ENST00000359195.3:c.613A>G	p.Lys205Glu	p.K205E	ENST00000359195	NM_002649.2	205	Aag/Gag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685272	89685272	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			88	111	175	0	ENST00000371953.3:c.167T>G	p.Phe56Cys	p.F56C	ENST00000371953	NM_000314.4	56	tTt/tGt																																																																															
POLE	5426	MSKCC	GRCh37	12	133256226	133256226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			285	71	241	0	ENST00000320574.5:c.435G>T	p.Leu145Phe	p.L145F	ENST00000320574	NM_006231.2	145	ttG/ttT																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222216	2222216	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	275	374	0	ENST00000326181.6:c.500A>C	p.Lys167Thr	p.K167T	ENST00000326181	NM_032271.2	167	aAa/aCa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492721	56492721	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			267	185	324	2	ENST00000407977.2:c.218C>G	p.Ala73Gly	p.A73G	ENST00000407977		73	gCt/gGt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306757	41306757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			135	95	196	0	ENST00000373198.4:c.902G>T	p.Gly301Val	p.G301V	ENST00000373198	NM_133170.3	301	gGg/gTg																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317431	1317431	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			89	143	235	0				ENST00000381566																																																																																		
CARD11	84433	MSKCC	GRCh37	7	2968239	2968239	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	191	307	0	ENST00000396946.4:c.1747del	p.His583IlefsTer17	p.H583Ifs*17	ENST00000396946	NM_032415.4	583	Cat/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7577091	7577091	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	200	356	0	ENST00000269305.4:c.847del	p.Arg283AlafsTer62	p.R283Afs*62	ENST00000269305	NM_001126112.2	283	Cgc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			102	43	450	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			122	53	456	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
ATRX	546	MSKCC	GRCh37	X	76778738	76778738	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			19	19	296	0	ENST00000373344.5:c.6841G>T	p.Glu2281Ter	p.E2281*	ENST00000373344	NM_000489.3	2281	Gag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119789	70119789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			74	51	439	0	ENST00000245479.2:c.791G>C	p.Arg264Thr	p.R264T	ENST00000245479	NM_000346.3	264	aGa/aCa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11308032	11308032	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			35	63	519	0	ENST00000361445.4:c.960G>T	p.Gln320His	p.Q320H	ENST00000361445	NM_004958.3	320	caG/caT																																																																															
ALK	238	MSKCC	GRCh37	2	30143132	30143132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			72	33	444	0	ENST00000389048.3:c.394G>T	p.Val132Leu	p.V132L	ENST00000389048	NM_004304.4	132	Gtg/Ttg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198260781	198260781	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			41	46	464	0	ENST00000335508.6:c.3538A>T	p.Arg1180Ter	p.R1180*	ENST00000335508	NM_012433.2	1180	Aga/Tga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691796	30691796	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			77	28	497	0	ENST00000359013.4:c.373G>T	p.Val125Phe	p.V125F	ENST00000359013	NM_001024847.2	125	Gtt/Ttt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259587	89259587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			32	15	340	0	ENST00000336596.2:c.731G>A	p.Cys244Tyr	p.C244Y	ENST00000336596	NM_005233.5	244	tGc/tAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524922	187524922	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			68	40	517	0	ENST00000441802.2:c.10758G>C	p.Met3586Ile	p.M3586I	ENST00000441802	NM_005245.3	3586	atG/atC																																																																															
APC	324	MSKCC	GRCh37	5	112103068	112103068	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			32	25	396	0	ENST00000257430.4:c.403G>T	p.Glu135Ter	p.E135*	ENST00000257430	NM_000038.5	135	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112173860	112173860	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			36	29	446	0	ENST00000257430.4:c.2569G>C	p.Gly857Arg	p.G857R	ENST00000257430	NM_000038.5	857	Gga/Cga																																																																															
HGF	3082	MSKCC	GRCh37	7	81335697	81335697	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			52	14	469	0	ENST00000222390.5:c.1663G>T	p.Gly555Ter	p.G555*	ENST00000222390	NM_000601.4	555	Gga/Tga																																																																															
NBN	4683	MSKCC	GRCh37	8	90970984	90970984	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			73	23	485	0	ENST00000265433.3:c.1093G>C	p.Ala365Pro	p.A365P	ENST00000265433	NM_002485.4	365	Gct/Cct																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738392	145738392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			190	78	437	0	ENST00000428558.2:c.2593G>A	p.Glu865Lys	p.E865K	ENST00000428558	NM_004260.3	865	Gaa/Aaa																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249766	110249766	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	53	296	0	ENST00000374672.4:c.909C>A	p.His303Gln	p.H303Q	ENST00000374672	NM_004235.4	303	caC/caA																																																																															
IGF2	3481	MSKCC	GRCh37	11	2156596	2156596	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			82	29	365	0	ENST00000434045.2:c.325+1G>T		p.X109_splice	ENST00000434045	NM_001127598.1	109																																																																																
PIK3C2G	5288	MSKCC	GRCh37	12	18715776	18715776	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			53	30	508	1	ENST00000266497.5:c.3607A>G	p.Arg1203Gly	p.R1203G	ENST00000266497		1203	Agg/Ggg																																																																															
RB1	5925	MSKCC	GRCh37	13	48954316	48954316	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			67	16	381	0	ENST00000267163.4:c.1437C>G	p.Asp479Glu	p.D479E	ENST00000267163	NM_000321.2	479	gaC/gaG																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434986	110434986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			94	39	316	0	ENST00000375856.3:c.3415G>T	p.Asp1139Tyr	p.D1139Y	ENST00000375856	NM_003749.2	1139	Gac/Tac																																																																															
DICER1	23405	MSKCC	GRCh37	14	95599651	95599651	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			50	23	382	0	ENST00000343455.3:c.144+1G>T		p.X48_splice	ENST00000343455	NM_177438.2	48																																																																																
IGF1R	3480	MSKCC	GRCh37	15	99500550	99500550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			94	49	371	0	ENST00000268035.6:c.3983G>T	p.Gly1328Val	p.G1328V	ENST00000268035	NM_000875.3	1328	gGc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579378	7579378	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			102	36	444	0	ENST00000269305.4:c.309C>A	p.Tyr103Ter	p.Y103*	ENST00000269305	NM_001126112.2	103	taC/taA																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602763	10602763	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			88	140	428	0	ENST00000171111.5:c.815G>C	p.Arg272Pro	p.R272P	ENST00000171111	NM_203500.1	272	cGc/cCc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105651	11105651	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			59	121	413	0	ENST00000344626.4:c.1567G>T	p.Glu523Ter	p.E523*	ENST00000344626	NM_003072.3	523	Gag/Tag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271758	15271758	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			142	30	347	0	ENST00000263388.2:c.6681C>A	p.His2227Gln	p.H2227Q	ENST00000263388	NM_000435.2	2227	caC/caA																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			25	46	160	0	ENST00000304494.5:c.172del	p.Arg58GlufsTer88	p.R58Efs*88	ENST00000304494	NM_000077.4	58	Cga/ga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039826	47039847	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCCAATGAAGGCAGTCGCAT	CCTCCAATGAAGGCAGTCGCAT	-			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			37	44	282	0	ENST00000329236.7:c.936_957del	p.Ser313ValfsTer87	p.S313Vfs*87	ENST00000329236	NM_001204466.1	312	gCCTCCAATGAAGGCAGTCGCATc/gc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039856	47039872	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCTGTGGCCAGCACT	CCTCTGTGGCCAGCACT	-			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			38	49	250	0	ENST00000329236.7:c.965_981del	p.Ala322GlyfsTer37	p.A322Gfs*37	ENST00000329236	NM_001204466.1	322	gCCTCTGTGGCCAGCACT/g																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039877	47039884	+	frameshift_variant	Frame_Shift_Del	DEL	TTGCTGCG	TTGCTGCG	C			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			35	49	213	0	ENST00000329236.7:c.986_993delinsC	p.Ile329ThrfsTer76	p.I329Tfs*76	ENST00000329236	NM_001204466.1	329	aTTGCTGCG/aC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0002980-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			932	116	588	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
WT1	7490	MSKCC	GRCh37	11	32456789	32456789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002980-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	34	240	0	ENST00000332351.3:c.103G>T	p.Asp35Tyr	p.D35Y	ENST00000332351	NM_024426.4	35	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380238	25380238	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002980-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			892	128	612	0	ENST00000256078.4:c.220A>G	p.Thr74Ala	p.T74A	ENST00000256078	NM_033360.2	74	Act/Gct																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987085	36987085	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002980-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			396	37	381	0	ENST00000354822.5:c.604C>G	p.Gln202Glu	p.Q202E	ENST00000354822	NM_001079668.2	202	Cag/Gag																																																																															
CDH1	999	MSKCC	GRCh37	16	68771319	68771319	+	start_lost	Translation_Start_Site	SNP	A	A	T			P-0002980-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			299	36	240	0	ENST00000261769.5:c.1A>T	p.Met1?	p.M1?	ENST00000261769	NM_004360.3	1	Atg/Ttg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220698	1220698	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002980-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	98	536	2	ENST00000326873.7:c.716G>C	p.Trp239Ser	p.W239S	ENST00000326873	NM_000455.4	239	tGg/tCg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971192	21971192	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002980-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	13	145	0	ENST00000304494.5:c.166del	p.Ser56AlafsTer90	p.S56Afs*90	ENST00000304494	NM_000077.4	56	Agc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			168	46	393	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G	rs587781702		P-0003008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			204	33	295	0	ENST00000269305.4:c.920-1G>C		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
HNF1A	6927	MSKCC	GRCh37	12	121432137	121432137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	42	369	0	ENST00000257555.6:c.884C>T	p.Pro295Leu	p.P295L	ENST00000257555		295	cCg/cTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971115	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTCGGGTGAGAGTGGCG	GGGTCGGGTGAGAGTGGCG	-			P-0003008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			122	22	214	0	ENST00000304494.5:c.225_243del	p.Ala76CysfsTer64	p.A76Cfs*64	ENST00000304494	NM_000077.4	75	ccCGCCACTCTCACCCGACCC/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0003970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	102	224	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0003970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	41	79	0				ENST00000310581	NM_198253.2																																																																																	
AXIN1	8312	MSKCC	GRCh37	16	341287	341289	+	stop_gained	Nonsense_Mutation	ONP	CCT	CCT	ACC			P-0003970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	65	301	0	ENST00000262320.3:c.2195_2197delinsGGT	p.Gln732_Glu733delinsArgTer	p.Q732_E733delinsR*	ENST00000262320	NM_003502.3	732	cAGGag/cGGTag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003990-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			176	17	145	0				ENST00000310581	NM_198253.2																																																																																	
CBL	867	MSKCC	GRCh37	11	119170283	119170283	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs144191570		P-0003990-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			390	64	332	0	ENST00000264033.4:c.2513G>T	p.Gly838Val	p.G838V	ENST00000264033	NM_005188.3	838	gGc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0003990-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			582	79	400	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0003990-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			524	36	445	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112175706	112175706	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003990-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	49	323	0	ENST00000257430.4:c.4415del	p.Val1472GlufsTer35	p.V1472Efs*35	ENST00000257430	NM_000038.5	1472	gTa/ga																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182152	99182152	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	45	280	0	ENST00000074304.5:c.2217G>C	p.Leu739Phe	p.L739F	ENST00000074304	NM_001134224.1	739	ttG/ttC																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755620	57755620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	88	212	1	ENST00000274289.3:c.167C>T	p.Pro56Leu	p.P56L	ENST00000274289	NM_006622.3	56	cCt/cTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	27	51	0	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420164	49420164	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	60	273	0	ENST00000301067.7:c.15585G>C	p.Gln5195His	p.Q5195H	ENST00000301067	NM_003482.3	5195	caG/caC																																																																															
EP300	2033	MSKCC	GRCh37	22	41523581	41523581	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	116	263	0	ENST00000263253.7:c.997G>C	p.Glu333Gln	p.E333Q	ENST00000263253	NM_001429.3	333	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574023	7574023	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	159	337	0	ENST00000269305.4:c.1004delG	p.Arg335LeufsTer10	p.R335Lfs*10	ENST00000269305	NM_001126112.2	335	cGt/ct																																																																															
STK11	6794	MSKCC	GRCh37	19	1220377	1220378	+	missense_variant	Missense_Mutation	DNP	TC	TC	AT			P-0004286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	93	208	0	ENST00000326873.7:c.470_471delinsAT	p.Phe157Tyr	p.F157Y	ENST00000326873	NM_000455.4	157	tTC/tAT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	130	710	2	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																															
TP63	8626	MSKCC	GRCh37	3	189582127	189582127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	99	593	0	ENST00000264731.3:c.686C>A	p.Pro229His	p.P229H	ENST00000264731	NM_003722.4	229	cCt/cAt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	10	416	2	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089777	27089777	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	23	150	0	ENST00000324856.7:c.2732+1G>T		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120471797	120471797	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	113	595	0	ENST00000256646.2:c.3694G>T	p.Gly1232Cys	p.G1232C	ENST00000256646	NM_024408.3	1232	Ggt/Tgt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162475	47162475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	115	591	1	ENST00000409792.3:c.3651G>T	p.Trp1217Cys	p.W1217C	ENST00000409792	NM_014159.6	1217	tgG/tgT																																																																															
MITF	4286	MSKCC	GRCh37	3	69987154	69987154	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	38	459	0	ENST00000352241.4:c.536A>T	p.Asn179Ile	p.N179I	ENST00000352241	NM_198159.2	179	aAc/aTc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71064805	71064805	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	52	419	0	ENST00000318789.4:c.870-1G>A		p.X290_splice	ENST00000318789	NM_032682.5	290																																																																																
PDGFRA	5156	MSKCC	GRCh37	4	55133830	55133830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	120	560	0	ENST00000257290.5:c.1043C>T	p.Ser348Phe	p.S348F	ENST00000257290	NM_006206.4	348	tCc/tTc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149499098	149499098	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	40	456	0	ENST00000261799.4:c.2730C>A	p.Asn910Lys	p.N910K	ENST00000261799	NM_002609.3	910	aaC/aaA																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517564	176517564	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	39	563	1	ENST00000292408.4:c.265G>T	p.Ala89Ser	p.A89S	ENST00000292408	NM_213647.1	89	Gcc/Tcc																																																																															
IRF4	3662	MSKCC	GRCh37	6	394849	394849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	30	374	0	ENST00000380956.4:c.245G>A	p.Arg82Gln	p.R82Q	ENST00000380956	NM_001195286.1	82	cGa/cAa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32185804	32185804	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	73	532	1	ENST00000375023.3:c.1592T>A	p.Leu531Gln	p.L531Q	ENST00000375023	NM_004557.3	531	cTg/cAg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93969077	93969077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	109	802	0	ENST00000369303.4:c.1919G>A	p.Gly640Asp	p.G640D	ENST00000369303	NM_004440.3	640	gGt/gAt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979365	93979365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	137	723	2	ENST00000369303.4:c.1463G>T	p.Arg488Leu	p.R488L	ENST00000369303	NM_004440.3	488	cGg/cTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946330	2946330	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	95	664	0	ENST00000396946.4:c.3407A>G	p.Lys1136Arg	p.K1136R	ENST00000396946	NM_032415.4	1136	aAg/aGg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739826	41739826	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	173	875	0	ENST00000242208.4:c.147C>G	p.Asn49Lys	p.N49K	ENST00000242208	NM_002192.2	49	aaC/aaG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248995	55248995	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	73	433	0	ENST00000275493.2:c.2293G>T	p.Val765Leu	p.V765L	ENST00000275493	NM_005228.3	765	Gtg/Ttg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508361	106508361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	50	139	0	ENST00000359195.3:c.355C>A	p.Leu119Met	p.L119M	ENST00000359195	NM_002649.2	119	Ctg/Atg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507423	8507423	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	40	419	0	ENST00000356435.5:c.1555C>A	p.Pro519Thr	p.P519T	ENST00000356435		519	Cca/Aca																																																																															
PGR	5241	MSKCC	GRCh37	11	100998708	100998708	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	70	905	0	ENST00000325455.5:c.1094C>A	p.Pro365His	p.P365H	ENST00000325455	NM_001202474.3	365	cCc/cAc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	465691	465691	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	30	543	0	ENST00000399788.2:c.685G>C	p.Asp229His	p.D229H	ENST00000399788	NM_001042603.1	229	Gat/Cat																																																																															
KDM5A	5927	MSKCC	GRCh37	12	472265	472265	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	85	417	0	ENST00000399788.2:c.538-2A>T		p.X180_splice	ENST00000399788	NM_001042603.1	180																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49432333	49432333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	102	585	0	ENST00000301067.7:c.8806G>A	p.Ala2936Thr	p.A2936T	ENST00000301067	NM_003482.3	2936	Gcc/Acc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582900	95582900	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	75	586	0	ENST00000343455.3:c.1642C>T	p.Gln548Ter	p.Q548*	ENST00000343455	NM_177438.2	548	Caa/Taa																																																																															
MGA	23269	MSKCC	GRCh37	15	41989148	41989148	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	94	871	0	ENST00000219905.7:c.1940G>T	p.Gly647Val	p.G647V	ENST00000219905	NM_001164273.1	647	gGg/gTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119764	70119764	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	57	586	0	ENST00000245479.2:c.766G>T	p.Gly256Trp	p.G256W	ENST00000245479	NM_000346.3	256	Ggg/Tgg																																																																															
STK11	6794	MSKCC	GRCh37	19	1223048	1223048	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	81	543	0	ENST00000326873.7:c.985A>T	p.Lys329Ter	p.K329*	ENST00000326873	NM_000455.4	329	Aag/Tag																																																																															
INSR	3643	MSKCC	GRCh37	19	7126655	7126655	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	32	422	0	ENST00000302850.5:c.2953G>T	p.Asp985Tyr	p.D985Y	ENST00000302850	NM_000208.2	985	Gat/Tat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039347	47039347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	83	442	1	ENST00000329236.7:c.739G>T	p.Ala247Ser	p.A247S	ENST00000329236	NM_001204466.1	247	Gcg/Tcg																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123504136	123504136	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	50	272	0	ENST00000371139.4:c.312del	p.Lys105SerfsTer13	p.K105Sfs*13	ENST00000371139	NM_001114937.2	104	aaG/aa																																																																															
ALK	238	MSKCC	GRCh37	2	29519850	29519851	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	62	608	0	ENST00000389048.3:c.1720_1721delinsAT	p.Gly574Met	p.G574M	ENST00000389048	NM_004304.4	574	GGg/ATg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661835	227661836	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	A			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	31	278	0	ENST00000305123.5:c.1619_1620delinsT	p.Pro540LeufsTer15	p.P540Lfs*15	ENST00000305123	NM_005544.2	540	cCG/cT																																																																															
INSR	3643	MSKCC	GRCh37	19	7128878	7128879	+	stop_gained	Nonsense_Mutation	DNP	AG	AG	TA			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	30	559	0	ENST00000302850.5:c.2929_2930delinsTA	p.Leu977Ter	p.L977*	ENST00000302850	NM_000208.2	977	CTa/TAa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231413	46231413	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	GGTGCTAT			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	92	461	0	ENST00000334344.6:c.1253delinsGGTGCTAT	p.Thr418ArgfsTer45	p.T418Rfs*45	ENST00000334344	NM_152641.2	418	aCa/aGGTGCTATa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012345	176012345	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	53	228	0	ENST00000367669.3:c.1589C>G	p.Ala530Gly	p.A530G	ENST00000367669	NM_022457.5	530	gCt/gGt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965227	25965227	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	42	190	1	ENST00000435504.4:c.3979T>C	p.Tyr1327His	p.Y1327H	ENST00000435504		1327	Tat/Cat																																																																															
MSH2	4436	MSKCC	GRCh37	2	47707900	47707900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	58	225	0	ENST00000233146.2:c.2524G>C	p.Glu842Gln	p.E842Q	ENST00000233146	NM_000251.2	842	Gag/Cag																																																																															
BCL6	604	MSKCC	GRCh37	3	187440387	187440387	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0004593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	59	118	0	ENST00000232014.4:c.1980T>G	p.Cys660Trp	p.C660W	ENST00000232014	NM_001130845.1	660	tgT/tgG																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149453024	149453024	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	85	169	0	ENST00000286301.3:c.922A>G	p.Asn308Asp	p.N308D	ENST00000286301	NM_005211.3	308	Aac/Gac																																																																															
HGF	3082	MSKCC	GRCh37	7	81334966	81334966	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	65	209	0	ENST00000222390.5:c.1861G>T	p.Gly621Ter	p.G621*	ENST00000222390	NM_000601.4	621	Gga/Tga																																																																															
FANCC	2176	MSKCC	GRCh37	9	97897771	97897771	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	65	193	0	ENST00000289081.3:c.700C>A	p.Leu234Ile	p.L234I	ENST00000289081	NM_000136.2	234	Ctc/Atc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67459192	67459192	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0004593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	53	203	0	ENST00000327367.4:c.607+1G>C		p.X203_splice	ENST00000327367	NM_005902.3	203																																																																																
BRCA1	672	MSKCC	GRCh37	17	41267759	41267759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	85	258	0	ENST00000357654.3:c.118G>A	p.Asp40Asn	p.D40N	ENST00000357654	NM_007294.3	40	Gac/Aac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922195	39922329	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTTAATTTTCTGCTGTTTGGCAGGCGGCCTGGAGGCTGGTGCGCAGCTTGGCTGAGCCTGCTTTTTGCCGCCTGCACTGGTGGATGAAAGACTCTTCATGGGCGGAGAGCCGGAGAACACAGGCAAGCCTAAA	TCTTTAATTTTCTGCTGTTTGGCAGGCGGCCTGGAGGCTGGTGCGCAGCTTGGCTGAGCCTGCTTTTTGCCGCCTGCACTGGTGGATGAAAGACTCTTCATGGGCGGAGAGCCGGAGAACACAGGCAAGCCTAAA	-			P-0004593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	58	132	0	ENST00000378444.4:c.3848-5_3977del		p.X1283_splice	ENST00000378444	NM_001123385.1	1283																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	197	461	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444358	49444358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	49	275	0	ENST00000301067.7:c.3013C>T	p.Pro1005Ser	p.P1005S	ENST00000301067	NM_003482.3	1005	Cca/Tca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692841	89692841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	38	139	0	ENST00000371953.3:c.325G>T	p.Asp109Tyr	p.D109Y	ENST00000371953	NM_000314.4	109	Gac/Tac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	37	543	0	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176105633	176105633	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	49	537	0	ENST00000367669.3:c.882G>C	p.Lys294Asn	p.K294N	ENST00000367669	NM_022457.5	294	aaG/aaC																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259406	89259406	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	81	517	1	ENST00000336596.2:c.550C>T	p.Gln184Ter	p.Q184*	ENST00000336596	NM_005233.5	184	Caa/Taa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390213	89390213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	41	391	0	ENST00000336596.2:c.962C>T	p.Ala321Val	p.A321V	ENST00000336596	NM_005233.5	321	gCt/gTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538226	187538226	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	31	512	0	ENST00000441802.2:c.9008T>A	p.Phe3003Tyr	p.F3003Y	ENST00000441802	NM_005245.3	3003	tTc/tAc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295321	1295321	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	23	320	0				ENST00000310581	NM_198253.2																																																																																	
IRF4	3662	MSKCC	GRCh37	6	394981	394981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	20	268	0	ENST00000380956.4:c.377G>C	p.Arg126Thr	p.R126T	ENST00000380956	NM_001195286.1	126	aGg/aCg																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032045	26032045	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1094	67	718	0	ENST00000244661.2:c.244G>C	p.Asp82His	p.D82H	ENST00000244661	NM_003537.3	82	Gat/Cat																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129208	152129208	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	41	475	0	ENST00000206249.3:c.161A>G	p.Tyr54Cys	p.Y54C	ENST00000206249	NM_000125.3	54	tAc/tGc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575444	64575444	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	28	519	0	ENST00000337652.1:c.588G>T	p.Glu196Asp	p.E196D	ENST00000337652	NM_130803.2	196	gaG/gaT																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180417	94180417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	51	509	0	ENST00000323929.3:c.1751C>T	p.Ser584Leu	p.S584L	ENST00000323929	NM_005591.3	584	tCa/tTa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118359450	118359450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	32	459	0	ENST00000534358.1:c.4454G>A	p.Cys1485Tyr	p.C1485Y	ENST00000534358	NM_005933.3	1485	tGt/tAt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	402137	402137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	91	634	0	ENST00000399788.2:c.4654G>T	p.Ala1552Ser	p.A1552S	ENST00000399788	NM_001042603.1	1552	Gcc/Tcc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	438026	438026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	74	426	0	ENST00000399788.2:c.1943G>A	p.Arg648Gln	p.R648Q	ENST00000399788	NM_001042603.1	648	cGa/cAa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562826	21562826	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	22	227	0	ENST00000382592.4:c.1093A>T	p.Thr365Ser	p.T365S	ENST00000382592	NM_014572.2	365	Acc/Tcc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240171	41240171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	15	93	0	ENST00000379561.5:c.179C>T	p.Ser60Leu	p.S60L	ENST00000379561	NM_002015.3	60	tCg/tTg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987117	36987117	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	63	256	0	ENST00000354822.5:c.572G>C	p.Arg191Pro	p.R191P	ENST00000354822	NM_001079668.2	191	cGc/cCc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473783	67473783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	48	364	0	ENST00000327367.4:c.863G>A	p.Arg288Lys	p.R288K	ENST00000327367	NM_005902.3	288	aGa/aAa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576096	88576096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	36	418	1	ENST00000360948.2:c.1577C>A	p.Pro526Gln	p.P526Q	ENST00000360948	NM_001012338.2	526	cCg/cAg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347067	347067	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	28	508	0	ENST00000262320.3:c.1944G>C	p.Arg648Ser	p.R648S	ENST00000262320	NM_003502.3	648	agG/agC																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16024521	16024521	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	34	514	0	ENST00000268712.3:c.1697A>T	p.Gln566Leu	p.Q566L	ENST00000268712	NM_006311.3	566	cAa/cTa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2180733	2180733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	57	444	0	ENST00000398665.3:c.103C>T	p.His35Tyr	p.H35Y	ENST00000398665	NM_032482.2	35	Cat/Tat																																																																															
INSR	3643	MSKCC	GRCh37	19	7117203	7117203	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	53	500	0	ENST00000302850.5:c.4013A>G	p.Glu1338Gly	p.E1338G	ENST00000302850	NM_000208.2	1338	gAg/gGg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52705255	52705255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	69	488	0	ENST00000322088.6:c.137G>A	p.Arg46Lys	p.R46K	ENST00000322088	NM_014225.5	46	aGg/aAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827958	40827958	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	23	385	0	ENST00000373198.4:c.2470G>T	p.Asp824Tyr	p.D824Y	ENST00000373198	NM_133170.3	824	Gac/Tac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980906	40980906	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	22	272	0	ENST00000373198.4:c.1580G>T	p.Gly527Val	p.G527V	ENST00000373198	NM_133170.3	527	gGc/gTc																																																																															
ERG	2078	MSKCC	GRCh37	21	39755416	39755416	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	22	373	0	ENST00000288319.7:c.1349A>T	p.Asn450Ile	p.N450I	ENST00000288319	NM_182918.3	450	aAc/aTc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1315012	1315012	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	26	394	0				ENST00000381566																																																																																		
ATRX	546	MSKCC	GRCh37	X	76938272	76938272	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	92	558	0	ENST00000373344.5:c.2476A>T	p.Lys826Ter	p.K826*	ENST00000373344	NM_000489.3	826	Aag/Tag																																																																															
JAK3	3718	MSKCC	GRCh37	19	17950424	17950438	+	inframe_deletion	In_Frame_Del	DEL	TGGGGCTGCGCCGGA	TGGGGCTGCGCCGGA	-			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	26	329	0	ENST00000458235.1:c.1289_1303del	p.Ile430_Pro434del	p.I430_P434del	ENST00000458235	NM_000215.3	430	aTCCGGCGCAGCCCCAca/aca																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94129019	94129019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	52	753	0	ENST00000369303.4:c.41G>A	p.Cys14Tyr	p.C14Y	ENST00000369303	NM_004440.3	14	tGc/tAc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17951092	17951092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	103	552	0	ENST00000458235.1:c.1201C>G	p.Leu401Val	p.L401V	ENST00000458235	NM_000215.3	401	Ctc/Gtc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685242	89685284	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTTTTTGTTTGTTTGTTTTGTTTTAAGGTTTTTGGATTCAAA	GCTTTTTGTTTGTTTGTTTTGTTTTAAGGTTTTTGGATTCAAA	-			P-0004735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	11	144	0	ENST00000371953.3:c.165-26_181del		p.X55_splice	ENST00000371953	NM_000314.4	55																																																																																
BRCA2	675	MSKCC	GRCh37	13	32910422	32910422	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	95	709	0	ENST00000380152.3:c.1933del	p.Arg645GlufsTer15	p.R645Efs*15	ENST00000380152		644	Aaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576848	7576851	+	splice_donor_variant,intron_variant	Splice_Site	DEL	AGTA	AGTA	-			P-0004735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	41	488	0	ENST00000269305.4:c.993+2_993+5del		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
XPO1	7514	MSKCC	GRCh37	2	61712950	61712950	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	66	560	0	ENST00000401558.2:c.2461C>G	p.Gln821Glu	p.Q821E	ENST00000401558	NM_003400.3	821	Caa/Gaa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0004742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	29	273	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat																																																																															
MYC	4609	MSKCC	GRCh37	8	128750684	128750684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	62	440	0	ENST00000377970.2:c.221C>T	p.Pro74Leu	p.P74L	ENST00000377970	NM_002467.4	74	cCg/cTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0004742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	38	290	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829423	72829423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	91	645	0	ENST00000268489.5:c.7158G>A	p.Met2386Ile	p.M2386I	ENST00000268489	NM_006885.3	2386	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0004742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	88	542	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925484	114925486	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0004742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	90	622	0	ENST00000543371.1:c.1562_1564del	p.Leu521_Lys522delinsGln	p.L521_K522delinsQ	ENST00000543371	NM_001198531.1	521	cTGAag/cag																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073427	8073427	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1122	394	1358	0	ENST00000377482.5:c.1232T>G	p.Phe411Cys	p.F411C	ENST00000377482	NM_018948.3	411	tTt/tGt																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073435	8073435	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1121	417	1354	0	ENST00000377482.5:c.1224A>C	p.Glu408Asp	p.E408D	ENST00000377482	NM_018948.3	408	gaA/gaC																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074126	8074126	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	401	1252	2	ENST00000377482.5:c.533A>G	p.Asp178Gly	p.D178G	ENST00000377482	NM_018948.3	178	gAt/gGt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782177	9782177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	143	521	0	ENST00000377346.4:c.2200C>A	p.Pro734Thr	p.P734T	ENST00000377346	NM_005026.3	734	Cca/Aca																																																																															
MTOR	2475	MSKCC	GRCh37	1	11307888	11307888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	297	896	0	ENST00000361445.4:c.1104G>T	p.Glu368Asp	p.E368D	ENST00000361445	NM_004958.3	368	gaG/gaT																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259962	16259962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	262	920	3	ENST00000375759.3:c.7227G>T	p.Glu2409Asp	p.E2409D	ENST00000375759	NM_015001.2	2409	gaG/gaT																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363069	40363069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	197	600	0	ENST00000397332.2:c.1160G>T	p.Arg387Ile	p.R387I	ENST00000397332	NM_001033082.2	387	aGa/aTa																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521530	46521530	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	277	871	1	ENST00000262741.5:c.878A>C	p.Lys293Thr	p.K293T	ENST00000262741	NM_003629.3	293	aAa/aCa																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46733260	46733260	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	246	759	0	ENST00000371975.4:c.1021T>G	p.Phe341Val	p.F341V	ENST00000371975	NM_003579.3	341	Ttt/Gtt																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733503	85733503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	309	1203	1	ENST00000370580.1:c.509C>A	p.Ser170Tyr	p.S170Y	ENST00000370580	NM_003921.4	170	tCt/tAt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851255	156851255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	251	899	1	ENST00000524377.1:c.2212G>A	p.Asp738Asn	p.D738N	ENST00000524377	NM_002529.3	738	Gac/Aac																																																																															
CDC73	79577	MSKCC	GRCh37	1	193099338	193099338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	151	459	0	ENST00000367435.3:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000367435	NM_024529.4	91	cGa/cAa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193104720	193104720	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	142	504	0	ENST00000367435.3:c.423+1G>A		p.X141_splice	ENST00000367435	NM_024529.4	141																																																																																
CDC73	79577	MSKCC	GRCh37	1	193111048	193111048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	156	611	1	ENST00000367435.3:c.581G>T	p.Arg194Ile	p.R194I	ENST00000367435	NM_024529.4	194	aGa/aTa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111186	193111186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	133	593	1	ENST00000367435.3:c.719G>A	p.Ser240Asn	p.S240N	ENST00000367435	NM_024529.4	240	aGc/aAc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716043	243716043	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	140	520	0	ENST00000263826.5:c.1151A>G	p.Asp384Gly	p.D384G	ENST00000263826	NM_005465.4	384	gAt/gGt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243727102	243727102	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	144	582	0	ENST00000263826.5:c.868T>G	p.Phe290Val	p.F290V	ENST00000263826	NM_005465.4	290	Ttt/Gtt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243778426	243778426	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	145	540	0	ENST00000263826.5:c.599T>G	p.Leu200Ter	p.L200*	ENST00000263826	NM_005465.4	200	tTa/tGa																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085942	16085942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	176	511	2	ENST00000281043.3:c.1118G>A	p.Arg373Gln	p.R373Q	ENST00000281043	NM_005378.4	373	cGa/cAa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068357	26068357	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	151	574	0	ENST00000435504.4:c.133G>T	p.Glu45Ter	p.E45*	ENST00000435504		45	Gaa/Taa																																																																															
ALK	238	MSKCC	GRCh37	2	29430047	29430047	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	228	803	0	ENST00000389048.3:c.3928A>G	p.Thr1310Ala	p.T1310A	ENST00000389048	NM_004304.4	1310	Aca/Gca																																																																															
ALK	238	MSKCC	GRCh37	2	29455275	29455275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	213	601	0	ENST00000389048.3:c.2527G>A	p.Gly843Arg	p.G843R	ENST00000389048	NM_004304.4	843	Gga/Aga																																																																															
ALK	238	MSKCC	GRCh37	2	29940455	29940455	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138686378		P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	167	791	5	ENST00000389048.3:c.776G>A	p.Arg259His	p.R259H	ENST00000389048	NM_004304.4	259	cGc/cAc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47690242	47690242	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	196	737	0	ENST00000233146.2:c.1459G>T	p.Asp487Tyr	p.D487Y	ENST00000233146	NM_000251.2	487	Gac/Tac																																																																															
XPO1	7514	MSKCC	GRCh37	2	61720080	61720080	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	149	507	0	ENST00000401558.2:c.1354A>C	p.Asn452His	p.N452H	ENST00000401558	NM_003400.3	452	Aat/Cat																																																																															
BARD1	580	MSKCC	GRCh37	2	215645665	215645665	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	169	531	0	ENST00000260947.4:c.933G>T	p.Lys311Asn	p.K311N	ENST00000260947	NM_000465.2	311	aaG/aaT																																																																															
VHL	7428	MSKCC	GRCh37	3	10183595	10183595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	306	912	0	ENST00000256474.2:c.64G>A	p.Glu22Lys	p.E22K	ENST00000256474	NM_000551.3	22	Gag/Aag																																																																															
MLH1	4292	MSKCC	GRCh37	3	37050324	37050324	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	195	724	0	ENST00000231790.2:c.473A>G	p.Asn158Ser	p.N158S	ENST00000231790	NM_000249.3	158	aAc/aGc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41268762	41268762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	207	714	1	ENST00000349496.5:c.1000G>A	p.Glu334Lys	p.E334K	ENST00000349496	NM_001904.3	334	Gaa/Aaa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163233	47163233	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	171	687	0	ENST00000409792.3:c.2893G>T	p.Glu965Ter	p.E965*	ENST00000409792	NM_014159.6	965	Gaa/Taa																																																																															
MST1	4485	MSKCC	GRCh37	3	49724685	49724685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	163	620	0	ENST00000449682.2:c.504G>T	p.Glu168Asp	p.E168D	ENST00000449682	NM_020998.3	168	gaG/gaT																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026984	71026984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	133	390	0	ENST00000318789.4:c.1343C>T	p.Ser448Leu	p.S448L	ENST00000318789	NM_032682.5	448	tCg/tTg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71050190	71050190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	150	392	1	ENST00000318789.4:c.995C>T	p.Ala332Val	p.A332V	ENST00000318789	NM_032682.5	332	gCg/gTg																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72891469	72891469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	187	515	0	ENST00000325599.8:c.293G>T	p.Arg98Ile	p.R98I	ENST00000325599	NM_018130.2	98	aGa/aTa																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664792	138664792	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			62	16	46	0	ENST00000330315.3:c.773A>G	p.Tyr258Cys	p.Y258C	ENST00000330315	NM_023067.3	258	tAc/tGc																																																																															
ATR	545	MSKCC	GRCh37	3	142224146	142224146	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	139	473	0	ENST00000350721.4:c.5032-1G>T		p.X1678_splice	ENST00000350721	NM_001184.3	1678																																																																																
ATR	545	MSKCC	GRCh37	3	142269003	142269003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	212	723	0	ENST00000350721.4:c.2947G>A	p.Asp983Asn	p.D983N	ENST00000350721	NM_001184.3	983	Gac/Aac																																																																															
ATR	545	MSKCC	GRCh37	3	142281484	142281484	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	202	633	0	ENST00000350721.4:c.760G>T	p.Glu254Ter	p.E254*	ENST00000350721	NM_001184.3	254	Gaa/Taa																																																																															
ATR	545	MSKCC	GRCh37	3	142281952	142281952	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	50	269	1	ENST00000350721.4:c.293-1G>T		p.X98_splice	ENST00000350721	NM_001184.3	98																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	243	973	1	ENST00000263967.3:c.333G>T	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	94	350	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP63	8626	MSKCC	GRCh37	3	189584500	189584500	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	192	652	2	ENST00000264731.3:c.796C>T	p.Arg266Ter	p.R266*	ENST00000264731	NM_003722.4	266	Cga/Tga																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55131106	55131106	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	263	691	1	ENST00000257290.5:c.649G>T	p.Glu217Ter	p.E217*	ENST00000257290	NM_006206.4	217	Gaa/Taa																																																																															
KDR	3791	MSKCC	GRCh37	4	55968610	55968610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	230	692	0	ENST00000263923.4:c.2053G>A	p.Glu685Lys	p.E685K	ENST00000263923	NM_002253.2	685	Gaa/Aaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230870	66230870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	147	574	0	ENST00000273854.3:c.2101G>A	p.Glu701Lys	p.E701K	ENST00000273854	NM_004439.5	701	Gaa/Aaa																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84393430	84393430	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	144	482	0	ENST00000321945.7:c.227C>A	p.Ser76Tyr	p.S76Y	ENST00000321945	NM_139076.2	76	tCt/tAt																																																																															
TET2	54790	MSKCC	GRCh37	4	106162525	106162525	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	131	494	1	ENST00000380013.4:c.3439T>G	p.Phe1147Val	p.F1147V	ENST00000380013	NM_001127208.2	1147	Ttt/Gtt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332718	153332718	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	179	530	0	ENST00000281708.4:c.238A>C	p.Asn80His	p.N80H	ENST00000281708	NM_033632.3	80	Aac/Cac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557284	187557284	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	243	705	1	ENST00000441802.2:c.4078G>T	p.Glu1360Ter	p.E1360*	ENST00000441802	NM_005245.3	1360	Gaa/Taa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584696	187584696	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144526682		P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	290	834	4	ENST00000441802.2:c.3337G>A	p.Asp1113Asn	p.D1113N	ENST00000441802	NM_005245.3	1113	Gat/Aat																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873734	35873734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	160	553	0	ENST00000303115.3:c.690G>T	p.Glu230Asp	p.E230D	ENST00000303115	NM_002185.3	230	gaG/gaT																																																																															
IL7R	3575	MSKCC	GRCh37	5	35875685	35875685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	198	671	0	ENST00000303115.3:c.872G>T	p.Arg291Ile	p.R291I	ENST00000303115	NM_002185.3	291	aGa/aTa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950600	38950600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	217	869	0	ENST00000357387.3:c.3350G>A	p.Gly1117Glu	p.G1117E	ENST00000357387	NM_152756.3	1117	gGa/gAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56152491	56152491	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	193	622	0	ENST00000399503.3:c.547C>T	p.Arg183Ter	p.R183*	ENST00000399503	NM_005921.1	183	Cga/Tga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184180	56184180	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	138	446	0	ENST00000399503.3:c.4385T>G	p.Phe1462Cys	p.F1462C	ENST00000399503	NM_005921.1	1462	tTt/tGt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752839	57752839	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	131	475	2	ENST00000274289.3:c.1089C>A	p.Phe363Leu	p.F363L	ENST00000274289	NM_006622.3	363	ttC/ttA																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67575550	67575550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	148	403	0	ENST00000274335.5:c.623C>A	p.Ser208Tyr	p.S208Y	ENST00000274335		208	tCt/tAt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86629147	86629147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	165	495	0	ENST00000274376.6:c.892G>T	p.Glu298Ter	p.E298*	ENST00000274376	NM_002890.2	298	Gaa/Taa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645121	86645121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	160	445	0	ENST00000274376.6:c.1193G>A	p.Arg398Gln	p.R398Q	ENST00000274376	NM_002890.2	398	cGa/cAa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86649000	86649000	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755634472		P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	155	519	0	ENST00000274376.6:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000274376	NM_002890.2	427	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175876	112175876	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	196	542	0	ENST00000257430.4:c.4585C>T	p.Gln1529Ter	p.Q1529*	ENST00000257430	NM_000038.5	1529	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112177788	112177788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	153	504	0	ENST00000257430.4:c.6497G>A	p.Arg2166Gln	p.R2166Q	ENST00000257430	NM_000038.5	2166	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112177901	112177901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	180	519	0	ENST00000257430.4:c.6610C>T	p.Arg2204Ter	p.R2204*	ENST00000257430	NM_000038.5	2204	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	203	679	1	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112178541	112178541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	165	540	0	ENST00000257430.4:c.7250C>A	p.Ser2417Tyr	p.S2417Y	ENST00000257430	NM_000038.5	2417	tCt/tAt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176666761	176666761	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	214	672	0	ENST00000439151.2:c.4197T>G	p.Asn1399Lys	p.N1399K	ENST00000439151	NM_022455.4	1399	aaT/aaG																																																																															
NSD1	64324	MSKCC	GRCh37	5	176673782	176673782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	209	680	0	ENST00000439151.2:c.4482G>T	p.Glu1494Asp	p.E1494D	ENST00000439151	NM_022455.4	1494	gaG/gaT																																																																															
IRF4	3662	MSKCC	GRCh37	6	401711	401711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	237	640	0	ENST00000380956.4:c.1033G>A	p.Asp345Asn	p.D345N	ENST00000380956	NM_001195286.1	345	Gac/Aac																																																																															
IRF4	3662	MSKCC	GRCh37	6	405111	405111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	222	731	0	ENST00000380956.4:c.1193G>T	p.Arg398Ile	p.R398I	ENST00000380956	NM_001195286.1	398	aGa/aTa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967895	93967895	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	269	1016	0	ENST00000369303.4:c.2032G>T	p.Asp678Tyr	p.D678Y	ENST00000369303	NM_004440.3	678	Gac/Tac																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979246	93979246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	261	1047	0	ENST00000369303.4:c.1582C>T	p.Pro528Ser	p.P528S	ENST00000369303	NM_004440.3	528	Ccc/Tcc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117715366	117715366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	151	538	0	ENST00000368508.3:c.1123G>T	p.Asp375Tyr	p.D375Y	ENST00000368508	NM_002944.2	375	Gat/Tat																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202210	138202210	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	228	596	0	ENST00000237289.4:c.2127A>C	p.Gln709His	p.Q709H	ENST00000237289	NM_001270507.1	709	caA/caC																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265319	152265319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	176	614	0	ENST00000206249.3:c.772G>T	p.Asp258Tyr	p.D258Y	ENST00000206249	NM_000125.3	258	Gac/Tac																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157525044	157525044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	241	773	0	ENST00000346085.5:c.4939C>A	p.Leu1647Ile	p.L1647I	ENST00000346085	NM_020732.3	1647	Ctt/Att																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729604	41729604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	305	1065	2	ENST00000242208.4:c.925C>T	p.Arg309Trp	p.R309W	ENST00000242208	NM_002192.2	309	Cgg/Tgg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444401	50444401	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	170	469	0	ENST00000331340.3:c.331C>T	p.Arg111Ter	p.R111*	ENST00000331340	NM_006060.4	111	Cga/Tga																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509539	106509539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	235	615	1	ENST00000359195.3:c.1533G>T	p.Glu511Asp	p.E511D	ENST00000359195	NM_002649.2	511	gaG/gaT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152027816	152027816	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	202	565	0	ENST00000262189.6:c.259G>T	p.Glu87Ter	p.E87*	ENST00000262189	NM_170606.2	87	Gaa/Taa																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346008	152346008	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139219364		P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			954	336	1152	0	ENST00000359321.1:c.562C>T	p.Arg188Cys	p.R188C	ENST00000359321	NM_005431.1	188	Cgc/Tgc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5050761	5050761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	153	534	0	ENST00000381652.3:c.544G>A	p.Ala182Thr	p.A182T	ENST00000381652	NM_004972.3	182	Gca/Aca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449814	8449814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	150	458	1	ENST00000356435.5:c.3899G>T	p.Arg1300Ile	p.R1300I	ENST00000356435		1300	aGa/aTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484149	8484149	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	194	681	0	ENST00000356435.5:c.3383T>G	p.Leu1128Arg	p.L1128R	ENST00000356435		1128	cTg/cGg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504401	8504401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757922864		P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	129	450	2	ENST00000356435.5:c.1682G>A	p.Arg561Gln	p.R561Q	ENST00000356435		561	cGa/cAa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8633380	8633380	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	160	722	1	ENST00000356435.5:c.289G>T	p.Glu97Ter	p.E97*	ENST00000356435		97	Gaa/Taa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974825	21974825	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	31	109	0	ENST00000304494.5:c.2T>C	p.Met1?	p.M1?	ENST00000304494	NM_000077.4	1	aTg/aCg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342596	87342596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	153	564	2	ENST00000277120.3:c.881C>A	p.Ser294Tyr	p.S294Y	ENST00000277120		294	tCt/tAt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570366	87570366	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	284	956	2	ENST00000277120.3:c.2106G>T	p.Glu702Asp	p.E702D	ENST00000277120		702	gaG/gaT																																																																															
FANCC	2176	MSKCC	GRCh37	9	98011564	98011564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	169	524	0	ENST00000289081.3:c.10G>T	p.Asp4Tyr	p.D4Y	ENST00000289081	NM_000136.2	4	Gat/Tat																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98232138	98232138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	184	577	0	ENST00000331920.6:c.1804C>T	p.Arg602Ter	p.R602*	ENST00000331920	NM_000264.3	602	Cga/Tga																																																																															
TET1	80312	MSKCC	GRCh37	10	70333850	70333850	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	210	664	2	ENST00000373644.4:c.1755G>T	p.Lys585Asn	p.K585N	ENST00000373644	NM_030625.2	585	aaG/aaT																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88672037	88672037	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1053423400		P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	87	340	1	ENST00000372037.3:c.571C>T	p.Arg191Cys	p.R191C	ENST00000372037	NM_004329.2	191	Cgt/Tgt																																																																															
SUFU	51684	MSKCC	GRCh37	10	104377097	104377097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	245	969	0	ENST00000369902.3:c.1208A>G	p.Asp403Gly	p.D403G	ENST00000369902	NM_016169.3	403	gAc/gGc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589651	69589651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	93	288	0	ENST00000168712.1:c.202G>A	p.Ala68Thr	p.A68T	ENST00000168712	NM_002007.2	68	Gcc/Acc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102198863	102198863	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	264	944	0	ENST00000263464.3:c.1032+2T>C		p.X344_splice	ENST00000263464	NM_001165.4	344																																																																																
ATM	472	MSKCC	GRCh37	11	108115673	108115673	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	149	447	0	ENST00000278616.4:c.821C>A	p.Ser274Tyr	p.S274Y	ENST00000278616	NM_000051.3	274	tCt/tAt																																																																															
ATM	472	MSKCC	GRCh37	11	108115717	108115717	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	119	387	0	ENST00000278616.4:c.865A>C	p.Ile289Leu	p.I289L	ENST00000278616	NM_000051.3	289	Atc/Ctc																																																																															
ATM	472	MSKCC	GRCh37	11	108153581	108153581	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	95	450	0	ENST00000278616.4:c.3721T>G	p.Tyr1241Asp	p.Y1241D	ENST00000278616	NM_000051.3	1241	Tac/Gac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344036	118344036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	167	488	0	ENST00000534358.1:c.2162G>A	p.Arg721Gln	p.R721Q	ENST00000534358	NM_005933.3	721	cGa/cAa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	420091	420091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	243	697	0	ENST00000399788.2:c.3176G>A	p.Arg1059Gln	p.R1059Q	ENST00000399788	NM_001042603.1	1059	cGg/cAg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18446950	18446950	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	99	431	0	ENST00000266497.5:c.1034+1G>T		p.X345_splice	ENST00000266497		345																																																																																
PIK3C2G	5288	MSKCC	GRCh37	12	18499648	18499648	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	230	728	0	ENST00000266497.5:c.1503T>G	p.Phe501Leu	p.F501L	ENST00000266497		501	ttT/ttG																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285685	46285685	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	119	459	0	ENST00000334344.6:c.5045T>G	p.Phe1682Cys	p.F1682C	ENST00000334344	NM_152641.2	1682	tTt/tGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49418670	49418670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	262	789	0	ENST00000301067.7:c.15844C>T	p.Arg5282Ter	p.R5282*	ENST00000301067	NM_003482.3	5282	Cga/Tga																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859665	57859665	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	360	1277	0	ENST00000228682.2:c.719A>G	p.Asp240Gly	p.D240G	ENST00000228682	NM_005269.2	240	gAt/gGt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861838	57861838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	437	1338	0	ENST00000228682.2:c.1139G>A	p.Arg380Gln	p.R380Q	ENST00000228682	NM_005269.2	380	cGa/cAa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115392	115115392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	237	772	0	ENST00000257566.3:c.934G>T	p.Glu312Ter	p.E312*	ENST00000257566	NM_016569.3	312	Gaa/Taa																																																																															
RAB35	11021	MSKCC	GRCh37	12	120536873	120536873	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	308	1240	0	ENST00000229340.5:c.313G>T	p.Glu105Ter	p.E105*	ENST00000229340	NM_006861.6	105	Gaa/Taa																																																																															
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	287	797	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21553895	21553895	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	363	903	1	ENST00000382592.4:c.2707C>A	p.Leu903Ile	p.L903I	ENST00000382592	NM_014572.2	903	Ctc/Atc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134988	41134988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	359	1073	1	ENST00000379561.5:c.640C>T	p.Arg214Cys	p.R214C	ENST00000379561	NM_002015.3	214	Cgt/Tgt																																																																															
RB1	5925	MSKCC	GRCh37	13	48881438	48881438	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	112	481	0	ENST00000267163.4:c.160G>T	p.Glu54Ter	p.E54*	ENST00000267163	NM_000321.2	54	Gaa/Taa																																																																															
RB1	5925	MSKCC	GRCh37	13	48916843	48916843	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	99	402	0	ENST00000267163.4:c.373G>T	p.Glu125Ter	p.E125*	ENST00000267163	NM_000321.2	125	Gaa/Taa																																																																															
RB1	5925	MSKCC	GRCh37	13	48955481	48955481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	176	604	0	ENST00000267163.4:c.1597G>A	p.Glu533Lys	p.E533K	ENST00000267163	NM_000321.2	533	Gaa/Aaa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95566237	95566237	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	136	512	0	ENST00000343455.3:c.4086G>T	p.Lys1362Asn	p.K1362N	ENST00000343455	NM_177438.2	1362	aaG/aaT																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729175	66729175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	273	700	0	ENST00000307102.5:c.383G>A	p.Gly128Asp	p.G128D	ENST00000307102	NM_002755.3	128	gGc/gAc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476262	88476262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	171	637	0	ENST00000360948.2:c.1870G>T	p.Asp624Tyr	p.D624Y	ENST00000360948	NM_001012338.2	624	Gac/Tac																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680780	88680780	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	201	669	0	ENST00000360948.2:c.477G>T	p.Gln159His	p.Q159H	ENST00000360948	NM_001012338.2	159	caG/caT																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434589	99434589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	203	572	0	ENST00000268035.6:c.676G>A	p.Glu226Lys	p.E226K	ENST00000268035	NM_000875.3	226	Gag/Aag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134992	2134992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	301	1051	1	ENST00000219476.3:c.4534G>A	p.Asp1512Asn	p.D1512N	ENST00000219476	NM_000548.3	1512	Gac/Aac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857401	9857401	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	162	656	0	ENST00000330684.3:c.4000A>G	p.Ser1334Gly	p.S1334G	ENST00000330684	NM_001134407.1	1334	Agc/Ggc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858276	9858276	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	198	657	0	ENST00000330684.3:c.3125G>T	p.Arg1042Met	p.R1042M	ENST00000330684	NM_001134407.1	1042	aGg/aTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858544	9858544	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	250	772	0	ENST00000330684.3:c.2857G>T	p.Glu953Ter	p.E953*	ENST00000330684	NM_001134407.1	953	Gag/Tag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923465	9923465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	236	718	0	ENST00000330684.3:c.1822C>A	p.Leu608Ile	p.L608I	ENST00000330684	NM_001134407.1	608	Ctt/Att																																																																															
CDH1	999	MSKCC	GRCh37	16	68857307	68857307	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	182	510	1	ENST00000261769.5:c.1942G>T	p.Glu648Ter	p.E648*	ENST00000261769	NM_004360.3	648	Gaa/Taa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822178	72822178	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	365	1196	0	ENST00000268489.5:c.9997C>A	p.Gln3333Lys	p.Q3333K	ENST00000268489	NM_006885.3	3333	Cag/Aag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832339	72832339	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	356	1227	0	ENST00000268489.5:c.4242A>C	p.Glu1414Asp	p.E1414D	ENST00000268489	NM_006885.3	1414	gaA/gaC																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350710	89350710	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138898373		P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1147	425	1537	3	ENST00000301030.4:c.2240C>T	p.Ser747Leu	p.S747L	ENST00000301030	NM_001256183.1	747	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	653	958	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16040679	16040679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	197	648	0	ENST00000268712.3:c.1455G>T	p.Glu485Asp	p.E485D	ENST00000268712	NM_006311.3	485	gaG/gaT																																																																															
CD79B	974	MSKCC	GRCh37	17	62006623	62006623	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	206	775	0	ENST00000392795.3:c.656T>G	p.Val219Gly	p.V219G	ENST00000392795	NM_001039933.1	219	gTg/gGg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554264	63554264	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	257	798	0	ENST00000307078.5:c.475G>T	p.Asp159Tyr	p.D159Y	ENST00000307078	NM_004655.3	159	Gat/Tat																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554343	63554343	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	271	824	0	ENST00000307078.5:c.396A>C	p.Lys132Asn	p.K132N	ENST00000307078	NM_004655.3	132	aaA/aaC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593465	48593465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	188	573	2	ENST00000342988.3:c.1216G>A	p.Ala406Thr	p.A406T	ENST00000342988	NM_005359.5	406	Gcg/Acg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604736	48604736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	253	598	0	ENST00000342988.3:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000342988	NM_005359.5	520	Gaa/Taa																																																																															
BCL2	596	MSKCC	GRCh37	18	60795942	60795942	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	271	763	3	ENST00000333681.4:c.636C>A	p.Phe212Leu	p.F212L	ENST00000333681		212	ttC/ttA																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626925	14626925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	338	1228	0	ENST00000254322.2:c.850G>A	p.Val284Ile	p.V284I	ENST00000254322	NM_006145.1	284	Gta/Ata																																																																															
AXL	558	MSKCC	GRCh37	19	41726544	41726544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	201	662	0	ENST00000301178.4:c.89C>T	p.Thr30Met	p.T30M	ENST00000301178	NM_021913.4	30	aCg/aTg																																																																															
AXL	558	MSKCC	GRCh37	19	41748909	41748909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	228	847	1	ENST00000301178.4:c.1434G>T	p.Glu478Asp	p.E478D	ENST00000301178	NM_021913.4	478	gaG/gaT																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023264	31023264	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	257	868	0	ENST00000375687.4:c.2749G>T	p.Glu917Ter	p.E917*	ENST00000375687	NM_015338.5	917	Gaa/Taa																																																																															
TOP1	7150	MSKCC	GRCh37	20	39725906	39725906	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	161	482	0	ENST00000361337.2:c.777C>A	p.Phe259Leu	p.F259L	ENST00000361337	NM_003286.2	259	ttC/ttA																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1327744	1327744	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	299	835	0	ENST00000381566.1:c.137G>A	p.Trp46Ter	p.W46*	ENST00000381566		46	tGg/tAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411783	63411783	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	336	630	0	ENST00000330258.3:c.1384G>T	p.Glu462Ter	p.E462*	ENST00000330258	NM_152424.3	462	Gaa/Taa																																																																															
AR	367	MSKCC	GRCh37	X	66765820	66765820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	267	435	2	ENST00000374690.3:c.832G>A	p.Ala278Thr	p.A278T	ENST00000374690	NM_000044.3	278	Gct/Act																																																																															
MED12	9968	MSKCC	GRCh37	X	70348535	70348535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	326	499	1	ENST00000374080.3:c.3442C>T	p.Arg1148Cys	p.R1148C	ENST00000374080		1148	Cgc/Tgc																																																																															
BTK	695	MSKCC	GRCh37	X	100617205	100617205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	284	435	0	ENST00000308731.7:c.544C>T	p.Arg182Trp	p.R182W	ENST00000308731	NM_000061.2	182	Cgg/Tgg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94226073	94226073	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	31	102	0	ENST00000323929.3:c.-105-1G>T		p.X35_splice	ENST00000323929	NM_005591.3	35																																																																																
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0004921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	175	546	4	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0004921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	204	651	2	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851645	134851645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	125	425	2	ENST00000398015.3:c.1051C>T	p.Arg351Trp	p.R351W	ENST00000398015	NM_004441.4	351	Cgg/Tgg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295386	1295386	+	upstream_gene_variant	5'Flank	SNP	G	G	C			P-0004921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	10	142	0				ENST00000310581	NM_198253.2																																																																																	
PRDM1	639	MSKCC	GRCh37	6	106553611	106553611	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	56	150	0	ENST00000369096.4:c.1576G>C	p.Glu526Gln	p.E526Q	ENST00000369096	NM_001198.3	526	Gaa/Caa																																																																															
RARA	5914	MSKCC	GRCh37	17	38511656	38511656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1808	123	430	0	ENST00000254066.5:c.1154G>A	p.Arg385Gln	p.R385Q	ENST00000254066	NM_000964.3	385	cGa/cAa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911542	101911542	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	139	444	0	ENST00000374994.4:c.1467del	p.Thr491HisfsTer56	p.T491Hfs*56	ENST00000374994	NM_004612.2	489	aaG/aa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56171029	56171030	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	101	320	0	ENST00000399503.3:c.1858dup	p.Ser620LysfsTer26	p.S620Kfs*26	ENST00000399503	NM_005921.1	619	-/A																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255210	16255210	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	101	545	0	ENST00000375759.3:c.2475A>T	p.Lys825Asn	p.K825N	ENST00000375759	NM_015001.2	825	aaA/aaT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248766	212248766	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	37	245	1	ENST00000342788.4:c.3501G>T	p.Glu1167Asp	p.E1167D	ENST00000342788	NM_005235.2	1167	gaG/gaT																																																																															
RHOA	387	MSKCC	GRCh37	3	49405948	49405948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	58	490	0	ENST00000418115.1:c.190G>A	p.Glu64Lys	p.E64K	ENST00000418115	NM_001664.2	64	Gaa/Aaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971057	21971057	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	286	292	0	ENST00000304494.5:c.301G>T	p.Gly101Trp	p.G101W	ENST00000304494	NM_000077.4	101	Ggg/Tgg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18650633	18650633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	83	403	0	ENST00000266497.5:c.2844G>T	p.Leu948Phe	p.L948F	ENST00000266497		948	ttG/ttT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440047	49440047	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	129	445	0	ENST00000301067.7:c.4579G>T	p.Glu1527Ter	p.E1527*	ENST00000301067	NM_003482.3	1527	Gaa/Taa																																																																															
POLE	5426	MSKCC	GRCh37	12	133201552	133201552	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	229	391	0	ENST00000320574.5:c.6686A>C	p.Glu2229Ala	p.E2229A	ENST00000320574	NM_006231.2	2229	gAg/gCg																																																																															
RB1	5925	MSKCC	GRCh37	13	49039195	49039195	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	65	444	0	ENST00000267163.4:c.2273C>A	p.Ser758Ter	p.S758*	ENST00000267163	NM_000321.2	758	tCg/tAg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679729	88679729	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	30	476	0	ENST00000360948.2:c.734T>G	p.Val245Gly	p.V245G	ENST00000360948	NM_001012338.2	245	gTc/gGc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993506	72993506	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	179	540	0	ENST00000268489.5:c.539A>T	p.Lys180Met	p.K180M	ENST00000268489	NM_006885.3	180	aAg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	83	378	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59820466	59820466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	83	405	0	ENST00000259008.2:c.2287G>T	p.Gly763Cys	p.G763C	ENST00000259008	NM_032043.2	763	Ggt/Tgt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560934	9560934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	26	416	0	ENST00000353224.5:c.848G>T	p.Arg283Leu	p.R283L	ENST00000353224	NM_177990.2	283	cGg/cTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	70	469	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	55	407	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78433847	78433848	+	splice_donor_variant	Splice_Site	DEL	AC	AC	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	70	418	0	ENST00000370768.2:c.250+1_250+2del		p.X84_splice	ENST00000370768	NM_003902.3	84																																																																																
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	38	119	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2977554	2977554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	142	374	0	ENST00000396946.4:c.1130G>A	p.Arg377Gln	p.R377Q	ENST00000396946	NM_032415.4	377	cGg/cAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	40	294	0	ENST00000407977.2:c.349delC	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	44	319	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680655	88680655	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142726068		P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	74	539	1	ENST00000360948.2:c.602G>A	p.Arg201His	p.R201H	ENST00000360948	NM_001012338.2	201	cGc/cAc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803616	1803616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	49	291	1	ENST00000260795.2:c.794C>T	p.Ala265Val	p.A265V	ENST00000260795		265	gCg/gTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434745	110434745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	47	289	0	ENST00000375856.3:c.3656C>T	p.Pro1219Leu	p.P1219L	ENST00000375856	NM_003749.2	1219	cCg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420108	49420108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs398123729		P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	80	516	1	ENST00000301067.7:c.15641G>A	p.Arg5214His	p.R5214H	ENST00000301067	NM_003482.3	5214	cGc/cAc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937914	36937914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	90	606	0	ENST00000361632.4:c.922C>T	p.Arg308Cys	p.R308C	ENST00000361632		308	Cgc/Tgc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206652386	206652386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	87	473	0	ENST00000367120.3:c.1093G>A	p.Val365Ile	p.V365I	ENST00000367120	NM_014002.3	365	Gtc/Atc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828079	243828079	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	67	441	0	ENST00000263826.5:c.279G>T	p.Glu93Asp	p.E93D	ENST00000263826	NM_005465.4	93	gaG/gaT																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630499	47630499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	48	340	0	ENST00000233146.2:c.169G>A	p.Val57Met	p.V57M	ENST00000233146	NM_000251.2	57	Gtg/Atg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128038196	128038196	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs150954655		P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	72	481	2	ENST00000285398.2:c.1354C>T	p.Arg452Ter	p.R452*	ENST00000285398	NM_000122.1	452	Cga/Tga																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198270162	198270162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	75	439	0	ENST00000335508.6:c.1274G>A	p.Arg425Gln	p.R425Q	ENST00000335508	NM_012433.2	425	cGa/cAa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212652872	212652872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	45	396	0	ENST00000342788.4:c.434G>A	p.Gly145Asp	p.G145D	ENST00000342788	NM_005235.2	145	gGt/gAt																																																																															
INHA	3623	MSKCC	GRCh37	2	220439724	220439724	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201577506		P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	84	589	2	ENST00000243786.2:c.577G>A	p.Val193Ile	p.V193I	ENST00000243786	NM_002191.3	193	Gtc/Atc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528572	89528572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	64	448	4	ENST00000336596.2:c.2872G>A	p.Val958Met	p.V958M	ENST00000336596	NM_005233.5	958	Gtg/Atg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131924382	131924382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	56	314	0	ENST00000265335.6:c.1055G>A	p.Arg352His	p.R352H	ENST00000265335		352	cGt/cAt																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271533	26271533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1368	145	914	1	ENST00000305910.3:c.80G>A	p.Arg27Gln	p.R27Q	ENST00000305910	NM_003534.2	27	cGg/cAg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129373	152129373	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	60	315	0	ENST00000206249.3:c.326T>C	p.Met109Thr	p.M109T	ENST00000206249	NM_000125.3	109	aTg/aCg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2951852	2951852	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770667388		P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	66	433	0	ENST00000396946.4:c.3098C>T	p.Ala1033Val	p.A1033V	ENST00000396946	NM_032415.4	1033	gCg/gTg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730040	41730040	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	188	711	1	ENST00000242208.4:c.489G>T	p.Lys163Asn	p.K163N	ENST00000242208	NM_002192.2	163	aaG/aaT																																																																															
MET	4233	MSKCC	GRCh37	7	116415000	116415000	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	66	524	0	ENST00000397752.3:c.3094T>C	p.Ser1032Pro	p.S1032P	ENST00000397752	NM_000245.2	1032	Tcc/Ccc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860343	151860343	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	48	529	0	ENST00000262189.6:c.10319A>C	p.Glu3440Ala	p.E3440A	ENST00000262189	NM_170606.2	3440	gAg/gCg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100420	8100420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	78	444	0	ENST00000346208.3:c.394G>A	p.Val132Ile	p.V132I	ENST00000346208		132	Gtc/Atc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742934	17742934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	57	267	0	ENST00000250003.3:c.842G>A	p.Arg281His	p.R281H	ENST00000250003	NM_002478.4	281	cGc/cAc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94170371	94170371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	48	413	0	ENST00000323929.3:c.1898G>A	p.Arg633Gln	p.R633Q	ENST00000323929	NM_005591.3	633	cGa/cAa																																																																															
PGR	5241	MSKCC	GRCh37	11	100998199	100998199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	56	347	0	ENST00000325455.5:c.1603C>T	p.Pro535Ser	p.P535S	ENST00000325455	NM_001202474.3	535	Ccg/Tcg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111886063	111886063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	184	611	1	ENST00000341259.2:c.1685G>A	p.Arg562Gln	p.R562Q	ENST00000341259	NM_005475.2	562	cGg/cAg																																																																															
POLE	5426	MSKCC	GRCh37	12	133220437	133220437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	56	391	1	ENST00000320574.5:c.4276G>A	p.Val1426Ile	p.V1426I	ENST00000320574	NM_006231.2	1426	Gta/Ata																																																																															
POLE	5426	MSKCC	GRCh37	12	133257858	133257858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	158	485	0	ENST00000320574.5:c.70G>A	p.Gly24Ser	p.G24S	ENST00000320574	NM_006231.2	24	Ggc/Agc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347237	89347237	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	89	496	0	ENST00000301030.4:c.5713G>T	p.Gly1905Trp	p.G1905W	ENST00000301030	NM_001256183.1	1905	Ggg/Tgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29533316	29533316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	86	466	1	ENST00000358273.4:c.1319G>A	p.Arg440Gln	p.R440Q	ENST00000358273	NM_001042492.2	440	cGa/cAa																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370307	40370307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1255	105	885	0	ENST00000293328.3:c.1031C>T	p.Thr344Ile	p.T344I	ENST00000293328	NM_012448.3	344	aCc/aTc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40486062	40486062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	109	631	0	ENST00000264657.5:c.803C>T	p.Thr268Met	p.T268M	ENST00000264657	NM_139276.2	268	aCg/aTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120253	70120253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	105	557	0	ENST00000245479.2:c.1255G>A	p.Ala419Thr	p.A419T	ENST00000245479	NM_000346.3	419	Gcc/Acc																																																																															
GNA11	2767	MSKCC	GRCh37	19	3121145	3121145	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	94	437	0	ENST00000078429.4:c.1048C>T	p.Gln350Ter	p.Q350*	ENST00000078429	NM_002067.2	350	Cag/Tag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244223	5244223	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199851847		P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	67	349	0	ENST00000357368.4:c.1259G>A	p.Arg420His	p.R420H	ENST00000357368	NM_002850.3	420	cGc/cAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602571	10602571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	79	416	0	ENST00000171111.5:c.1007G>A	p.Arg336Gln	p.R336Q	ENST00000171111	NM_203500.1	336	cGa/cAa																																																																															
AKT2	208	MSKCC	GRCh37	19	40739787	40739787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	84	427	0	ENST00000392038.2:c.1438C>A	p.Arg480Ser	p.R480S	ENST00000392038	NM_001626.4	480	Cgc/Agc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9547019	9547019	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	45	175	0	ENST00000353224.5:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000353224	NM_177990.2	335	Cga/Tga																																																																															
STAG2	10735	MSKCC	GRCh37	X	123220401	123220401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	110	253	0	ENST00000218089.9:c.3058G>A	p.Val1020Ile	p.V1020I	ENST00000218089	NM_001042749.1	1020	Gtt/Att																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346158	89346158	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	20	140	0	ENST00000301030.4:c.6792del	p.Ala2265ProfsTer72	p.A2265Pfs*72	ENST00000301030	NM_001256183.1	2264	ccC/cc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16049853	16049853	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	49	393	0	ENST00000268712.3:c.919del	p.Ile307SerfsTer19	p.I307Sfs*19	ENST00000268712	NM_006311.3	307	Atc/tc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934243	49934243	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1407832113		P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	85	602	1	ENST00000296474.3:c.2264del	p.Gly755ValfsTer19	p.G755Vfs*19	ENST00000296474	NM_002447.2	755	gGt/gt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910590	29910590	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	54	241	0	ENST00000376809.5:c.133delC	p.Arg45AlafsTer32	p.R45Afs*32	ENST00000376809	NM_002116.7	44	Ccc/cc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21553861	21553861	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	63	543	3	ENST00000382592.4:c.2741delT	p.Leu914TrpfsTer10	p.L914Wfs*10	ENST00000382592	NM_014572.2	914	tTg/tg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096044	11096044	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	62	415	0	ENST00000344626.4:c.321del	p.Pro109ArgfsTer194	p.P109Rfs*194	ENST00000344626	NM_003072.3	106	atG/at																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874990	151874992	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	92	446	0	ENST00000262189.6:c.7546_7548del	p.Arg2516del	p.R2516del	ENST00000262189	NM_170606.2	2516	AGA/-																																																																															
BLM	641	MSKCC	GRCh37	15	91347484	91347484	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	82	595	4	ENST00000355112.3:c.3651delA	p.Lys1217AsnfsTer62	p.K1217Nfs*62	ENST00000355112	NM_000057.2	1216	Aaa/aa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448304	56448304	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	62	271	0	ENST00000407977.2:c.343del	p.Ala115ProfsTer43	p.A115Pfs*43	ENST00000407977		115	Gcc/cc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430901	181430901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	72	572	0	ENST00000325404.1:c.758del	p.Pro253LeufsTer21	p.P253Lfs*21	ENST00000325404	NM_003106.3	251	agC/ag																																																																															
BCL6	604	MSKCC	GRCh37	3	187446270	187446270	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	38	293	0	ENST00000232014.4:c.1418delC	p.Pro473ArgfsTer117	p.P473Rfs*117	ENST00000232014	NM_001130845.1	473	cCg/cg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44732910	44732910	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	43	225	0	ENST00000377967.4:c.117del	p.Ser40AlafsTer2	p.S40Afs*2	ENST00000377967	NM_021140.2	38	tCc/tc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151856099	151856100	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	64	542	0	ENST00000262189.6:c.11518dup	p.Thr3840AsnfsTer6	p.T3840Nfs*6	ENST00000262189	NM_170606.2	3840	aca/aAca																																																																															
MGA	23269	MSKCC	GRCh37	15	42021441	42021442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	62	757	2	ENST00000219905.7:c.3744dup	p.Glu1249ArgfsTer25	p.E1249Rfs*25	ENST00000219905	NM_001164273.1	1246	cga/cgAa																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145358	58145360	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	90	444	1	ENST00000257904.6:c.141_143del	p.Gly48del	p.G48del	ENST00000257904	NM_000075.3	47	ggAGGc/ggc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692902	89692902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	28	253	0	ENST00000371953.3:c.386G>A	p.Gly129Glu	p.G129E	ENST00000371953	NM_000314.4	129	gGa/gAa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225264		P-0005263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	49	208	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162737119	162737119	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	45	434	0	ENST00000367921.3:c.1263G>C	p.Trp421Cys	p.W421C	ENST00000367921	NM_006182.2	421	tgG/tgC																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52675997	52675997	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	56	433	0	ENST00000394830.3:c.1060G>C	p.Glu354Gln	p.E354Q	ENST00000394830	NM_018313.4	354	Gaa/Caa																																																																															
AKT1	207	MSKCC	GRCh37	14	105243010	105243010	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	67	374	0	ENST00000349310.3:c.273G>C	p.Glu91Asp	p.E91D	ENST00000349310	NM_001014432.1	91	gaG/gaC																																																																															
AKT1	207	MSKCC	GRCh37	14	105243094	105243094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	46	363	0	ENST00000349310.3:c.189G>A	p.Met63Ile	p.M63I	ENST00000349310	NM_001014432.1	63	atG/atA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057961	27057962	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	78	284	0	ENST00000324856.7:c.1670dup	p.Ser558ValfsTer65	p.S558Vfs*65	ENST00000324856	NM_006015.4	557	cag/cAag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006805	47006806	+	5_prime_UTR_variant	5'UTR	INS	-	-	G			P-0005263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	88	435	0	ENST00000329236.7:c.-71dup		p.*24*	ENST00000329236	NM_001204466.1																																																																																	
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	17	97	0				ENST00000310581	NM_198253.2																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	75	430	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0005473-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	157	603	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
RB1	5925	MSKCC	GRCh37	13	49026177	49026875	+	intron_variant	Intron	DEL	AATTTTTTCAAAAAATAAGCTCCTGGATTCATTGATTTTTTAAGGGTTTTTTGTGTCTCTGTCTCCTTCAGTTCTGCTCTGATCTTGGTTATTTTTTGTCTTCTGCTAGCTTTGGGGTTTGTTTGCTCTTTGAACTGGTTTTAGTATCAATATTGTACTAGCTTCATAAAATGAGATGAGGAATGTTTCTAGTTTTTCCATTCCAGGAAGAAAATCTGAGTAAAAGTGGAATTATCTGTCCCTTGAATGTTTGGTAGAATTTACTGGTAAAACCAAATGAGCTTGATGTTTTATTTATGGGAAGATTTTAAATTATTGATTCAAATTATTTAATAGTTGCAGGACTATGTAAGTTATTTTATTTCTTTTTTATTGAGTTTTGGTAATTTGTATTTTTGTAGTAATTTTCCACTTGGTCTACGTTTTCCAATTTATTGATATAAAATTATTCATAATAATTCCCTATTATCTTTTTAATCTTTGTGATTTTGTCCCATTTTTCATACCTAATACTGCCTATCTATCTCTTTTCTTTATCTTGATCAATCTGACTGGAGATTTGTTAGTTATTTCAAAGAATCCATTTTTGGCTTTGTTGACCAAACTGTGTTTTATCTTTGTTTTCAGTTTCATTAAGTTCTGCTCATGTCTTCATTTCTTTCTCTCCACTTTCTTCGTTTTTTTTCTGTCTTTCCTCCT	AATTTTTTCAAAAAATAAGCTCCTGGATTCATTGATTTTTTAAGGGTTTTTTGTGTCTCTGTCTCCTTCAGTTCTGCTCTGATCTTGGTTATTTTTTGTCTTCTGCTAGCTTTGGGGTTTGTTTGCTCTTTGAACTGGTTTTAGTATCAATATTGTACTAGCTTCATAAAATGAGATGAGGAATGTTTCTAGTTTTTCCATTCCAGGAAGAAAATCTGAGTAAAAGTGGAATTATCTGTCCCTTGAATGTTTGGTAGAATTTACTGGTAAAACCAAATGAGCTTGATGTTTTATTTATGGGAAGATTTTAAATTATTGATTCAAATTATTTAATAGTTGCAGGACTATGTAAGTTATTTTATTTCTTTTTTATTGAGTTTTGGTAATTTGTATTTTTGTAGTAATTTTCCACTTGGTCTACGTTTTCCAATTTATTGATATAAAATTATTCATAATAATTCCCTATTATCTTTTTAATCTTTGTGATTTTGTCCCATTTTTCATACCTAATACTGCCTATCTATCTCTTTTCTTTATCTTGATCAATCTGACTGGAGATTTGTTAGTTATTTCAAAGAATCCATTTTTGGCTTTGTTGACCAAACTGTGTTTTATCTTTGTTTTCAGTTTCATTAAGTTCTGCTCATGTCTTCATTTCTTTCTCTCCACTTTCTTCGTTTTTTTTCTGTCTTTCCTCCT	-			P-0005473-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			0	88	1	0	ENST00000267163.4:c.1696-950_1696-252delTTTTTTCAAAAAATAAGCTCCTGGATTCATTGATTTTTTAAGGGTTTTTTGTGTCTCTGTCTCCTTCAGTTCTGCTCTGATCTTGGTTATTTTTTGTCTTCTGCTAGCTTTGGGGTTTGTTTGCTCTTTGAACTGGTTTTAGTATCAATATTGTACTAGCTTCATAAAATGAGATGAGGAATGTTTCTAGTTTTTCCATTCCAGGAAGAAAATCTGAGTAAAAGTGGAATTATCTGTCCCTTGAATGTTTGGTAGAATTTACTGGTAAAACCAAATGAGCTTGATGTTTTATTTATGGGAAGATTTTAAATTATTGATTCAAATTATTTAATAGTTGCAGGACTATGTAAGTTATTTTATTTCTTTTTTATTGAGTTTTGGTAATTTGTATTTTTGTAGTAATTTTCCACTTGGTCTACGTTTTCCAATTTATTGATATAAAATTATTCATAATAATTCCCTATTATCTTTTTAATCTTTGTGATTTTGTCCCATTTTTCATACCTAATACTGCCTATCTATCTCTTTTCTTTATCTTGATCAATCTGACTGGAGATTTGTTAGTTATTTCAAAGAATCCATTTTTGGCTTTGTTGACCAAACTGTGTTTTATCTTTGTTTTCAGTTTCATTAAGTTCTGCTCATGTCTTCATTTCTTTCTCTCCACTTTCTTCGTTTTTTTTCTGTCTTTCCTCCTAA		p.*566*	ENST00000267163	NM_000321.2																																																																																	
KMT2C	58508	MSKCC	GRCh37	7	151874395	151874395	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	167	425	0	ENST00000262189.6:c.8143G>T	p.Glu2715Ter	p.E2715*	ENST00000262189	NM_170606.2	2715	Gaa/Taa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47699383	47699383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	227	489	0	ENST00000347630.2:c.125G>A	p.Ser42Asn	p.S42N	ENST00000347630	NM_001007230.1	42	aGc/aAc																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793265	33793265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	112	269	0	ENST00000498907.2:c.56T>A	p.Leu19Gln	p.L19Q	ENST00000498907	NM_004364.3	19	cTg/cAg																																																																															
CENPA	1058	MSKCC	GRCh37	2	27009121	27009133	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGACCCCGACC	CCCGACCCCGACC	-			P-0005692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	53	259	0	ENST00000335756.4:c.61_73del	p.Thr21AlafsTer9	p.T21Afs*9	ENST00000335756	NM_001809.3	19	agCCCGACCCCGACC/ag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061137	38061197	+	protein_altering_variant	In_Frame_Del	DEL	GCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGC	GCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGC	T			P-0005692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	201	112	0	ENST00000250448.2:c.792_852delinsA	p.Arg265_Gly284del	p.R265_G284del	ENST00000250448	NM_004496.3	264	aaGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGC/aaA																																																																															
RAD50	10111	MSKCC	GRCh37	5	131925318	131925324	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTAGAA	TTTAGAA	-			P-0005692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	97	248	0	ENST00000265335.6:c.1246-4_1248del		p.X416_splice	ENST00000265335		416																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005776-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			201	38	335	0				ENST00000310581	NM_198253.2																																																																																	
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005776-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			232	99	335	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0005776-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			301	148	439	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170135	32170135	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs542331250		P-0005776-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			424	50	481	0	ENST00000375023.3:c.3473G>A	p.Arg1158Gln	p.R1158Q	ENST00000375023	NM_004557.3	1158	cGa/cAa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907098	101907098	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005776-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			363	133	468	1	ENST00000374994.4:c.1058G>T	p.Gly353Val	p.G353V	ENST00000374994	NM_004612.2	353	gGa/gTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40727077	40727077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005776-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			668	38	500	0	ENST00000373198.4:c.3887A>T	p.Glu1296Val	p.E1296V	ENST00000373198	NM_133170.3	1296	gAg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112173765	112173781	+	frameshift_variant	Frame_Shift_Del	DEL	ATTTGAATACTACAGTG	ATTTGAATACTACAGTG	-			P-0005776-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			331	62	406	0	ENST00000257430.4:c.2474_2490del	p.Tyr825PhefsTer13	p.Y825Ffs*13	ENST00000257430	NM_000038.5	825	tATTTGAATACTACAGTG/t																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023137	150023141	+	frameshift_variant	Frame_Shift_Del	DEL	AGATA	AGATA	-			P-0005776-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			498	102	567	0	ENST00000253339.5:c.122_126del	p.Leu41Ter	p.L41*	ENST00000253339		41	tTATCT/t																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0006312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	12	367	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	24	501	1	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332337	70332337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	355	513	2	ENST00000373644.4:c.242G>A	p.Arg81His	p.R81H	ENST00000373644	NM_030625.2	81	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1111	302	325	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15308383	15308383	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1235	373	356	0	ENST00000263388.2:c.125delC	p.Pro42LeufsTer194	p.P42Lfs*194	ENST00000263388	NM_000435.2	42	cCt/ct																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126730	5126730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	276	406	0	ENST00000381652.3:c.3338G>A	p.Arg1113His	p.R1113H	ENST00000381652	NM_004972.3	1113	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434352	49434352	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748969699		P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1302	382	411	0	ENST00000301067.7:c.7201C>T	p.Arg2401Cys	p.R2401C	ENST00000301067	NM_003482.3	2401	Cgc/Tgc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375045	31375045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	309	302	0	ENST00000328111.2:c.442C>T	p.Arg148Trp	p.R148W	ENST00000328111	NM_006892.3	148	Cgg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	357	325	0	ENST00000288602.6:c.1397G>A	p.Gly466Glu	p.G466E	ENST00000288602	NM_004333.4	466	gGa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1206165503		P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	426	416	0	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44911017	44911017	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	422	263	0	ENST00000377967.4:c.718C>T	p.Gln240Ter	p.Q240*	ENST00000377967	NM_021140.2	240	Caa/Taa																																																																															
CUL3	8452	MSKCC	GRCh37	2	225365174	225365174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1023	298	345	1	ENST00000264414.4:c.1516C>T	p.Arg506Trp	p.R506W	ENST00000264414	NM_003590.4	506	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262742	16262742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	147	153	1	ENST00000375759.3:c.10007G>A	p.Arg3336Gln	p.R3336Q	ENST00000375759	NM_015001.2	3336	cGg/cAg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844744	156844744	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1226	997	586	0	ENST00000524377.1:c.1298C>A	p.Ser433Tyr	p.S433Y	ENST00000524377	NM_002529.3	433	tCt/tAt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703506	47703506	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	257	431	0	ENST00000233146.2:c.2006G>A	p.Gly669Asp	p.G669D	ENST00000233146	NM_000251.2	669	gGc/gAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248666	212248666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	197	456	0	ENST00000342788.4:c.3601G>A	p.Glu1201Lys	p.E1201K	ENST00000342788	NM_005235.2	1201	Gag/Aag																																																																															
CUL3	8452	MSKCC	GRCh37	2	225362541	225362541	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs767240461		P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	271	362	0	ENST00000264414.4:c.1636C>T	p.Arg546Ter	p.R546*	ENST00000264414	NM_003590.4	546	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178937446	178937446	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	194	227	0	ENST00000263967.3:c.1834C>T	p.Arg612Ter	p.R612*	ENST00000263967	NM_006218.2	612	Cga/Tga																																																																															
BCL6	604	MSKCC	GRCh37	3	187447244	187447244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1451	314	321	1	ENST00000232014.4:c.949G>A	p.Glu317Lys	p.E317K	ENST00000232014	NM_001130845.1	317	Gag/Aag																																																																															
TP63	8626	MSKCC	GRCh37	3	189586436	189586436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	208	340	0	ENST00000264731.3:c.1060G>T	p.Ala354Ser	p.A354S	ENST00000264731	NM_003722.4	354	Gcg/Tcg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139725	55139725	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1058	312	378	0	ENST00000257290.5:c.1386G>T	p.Trp462Cys	p.W462C	ENST00000257290	NM_006206.4	462	tgG/tgT																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155196	55155196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1116	331	398	0	ENST00000257290.5:c.2795G>A	p.Cys932Tyr	p.C932Y	ENST00000257290	NM_006206.4	932	tGc/tAc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143043366	143043366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199940140		P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	202	327	2	ENST00000262992.4:c.2050G>A	p.Val684Ile	p.V684I	ENST00000262992	NM_001101669.1	684	Gtt/Att																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143067150	143067150	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	184	267	0	ENST00000262992.4:c.1564-1G>C		p.X522_splice	ENST00000262992	NM_001101669.1	522																																																																																
FAT1	2195	MSKCC	GRCh37	4	187540125	187540125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	287	435	0	ENST00000441802.2:c.7615A>G	p.Arg2539Gly	p.R2539G	ENST00000441802	NM_005245.3	2539	Aga/Gga																																																																															
TERT	7015	MSKCC	GRCh37	5	1295220	1295220	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	262	177	0				ENST00000310581	NM_198253.2																																																																																	
ROS1	6098	MSKCC	GRCh37	6	117642456	117642456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	283	448	0	ENST00000368508.3:c.5743G>A	p.Gly1915Arg	p.G1915R	ENST00000368508	NM_002944.2	1915	Gga/Aga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528886	157528886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	326	405	0	ENST00000346085.5:c.6611C>T	p.Ala2204Val	p.A2204V	ENST00000346085	NM_020732.3	2204	gCc/gTc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6038867	6038867	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1275	344	409	0	ENST00000265849.7:c.577A>G	p.Ile193Val	p.I193V	ENST00000265849	NM_000535.5	193	Atc/Gtc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55224321	55224321	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1253	370	376	1	ENST00000275493.2:c.1102G>T	p.Asp368Tyr	p.D368Y	ENST00000275493	NM_005228.3	368	Gat/Tat																																																																															
MET	4233	MSKCC	GRCh37	7	116412020	116412020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	211	332	0	ENST00000397752.3:c.3005A>G	p.Asp1002Gly	p.D1002G	ENST00000397752	NM_000245.2	1002	gAc/gGc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98240375	98240375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	139	366	0	ENST00000331920.6:c.1309G>A	p.Val437Ile	p.V437I	ENST00000331920	NM_000264.3	437	Gtc/Atc																																																																															
ABL1	25	MSKCC	GRCh37	9	133759955	133759955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	449	542	0	ENST00000318560.5:c.2278C>T	p.Pro760Ser	p.P760S	ENST00000318560	NM_005157.4	760	Ccg/Tcg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401074	139401074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	319	405	1	ENST00000277541.6:c.3919G>A	p.Val1307Ile	p.V1307I	ENST00000277541	NM_017617.3	1307	Gtc/Atc																																																																															
RET	5979	MSKCC	GRCh37	10	43617418	43617418	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1584	202	456	0	ENST00000355710.3:c.2755G>T	p.Ala919Ser	p.A919S	ENST00000355710	NM_020975.4	919	Gca/Tca																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202585	67202585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1148	329	353	1	ENST00000312629.5:c.1394G>A	p.Arg465His	p.R465H	ENST00000312629	NM_003952.2	465	cGt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425793	49425793	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1106	296	321	0	ENST00000301067.7:c.12695A>G	p.Gln4232Arg	p.Q4232R	ENST00000301067	NM_003482.3	4232	cAg/cGg																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813361	102813361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1218	411	425	0	ENST00000307046.8:c.328G>A	p.Ala110Thr	p.A110T	ENST00000307046	NM_001111285.1	110	Gca/Aca																																																																															
TSC2	7249	MSKCC	GRCh37	16	2114301	2114301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	381	429	0	ENST00000219476.3:c.1472C>T	p.Ser491Leu	p.S491L	ENST00000219476	NM_000548.3	491	tCg/tTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779158	3779158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	243	259	1	ENST00000262367.5:c.5890C>T	p.Arg1964Cys	p.R1964C	ENST00000262367	NM_004380.2	1964	Cgt/Tgt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892162	9892162	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	230	465	2	ENST00000330684.3:c.2328C>A	p.Asp776Glu	p.D776E	ENST00000330684	NM_001134407.1	776	gaC/gaA																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646702	23646702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	295	408	0	ENST00000261584.4:c.1165C>T	p.Leu389Phe	p.L389F	ENST00000261584	NM_024675.3	389	Ctt/Ttt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830751	72830751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1470	558	554	0	ENST00000268489.5:c.5830G>A	p.Ala1944Thr	p.A1944T	ENST00000268489	NM_006885.3	1944	Gcc/Acc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4110536	4110536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1187	351	369	0	ENST00000262948.5:c.421G>A	p.Gly141Arg	p.G141R	ENST00000262948	NM_030662.3	141	Ggg/Agg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231350	5231350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	317	311	0	ENST00000357368.4:c.2126C>T	p.Ser709Leu	p.S709L	ENST00000357368	NM_002850.3	709	tCg/tTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602692	10602692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1693	415	387	0	ENST00000171111.5:c.886C>T	p.Arg296Cys	p.R296C	ENST00000171111	NM_203500.1	296	Cgc/Tgc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602748	10602748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1308	770	399	0	ENST00000171111.5:c.830C>T	p.Thr277Met	p.T277M	ENST00000171111	NM_203500.1	277	aCg/aTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311597	15311597	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	118	120	0	ENST00000263388.2:c.118+2T>C		p.X40_splice	ENST00000263388	NM_000435.2	40																																																																																
PIK3R2	5296	MSKCC	GRCh37	19	18279287	18279287	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	338	350	0	ENST00000222254.8:c.1739G>T	p.Trp580Leu	p.W580L	ENST00000222254	NM_005027.3	580	tGg/tTg																																																																															
AXL	558	MSKCC	GRCh37	19	41727073	41727073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2794	451	509	1	ENST00000301178.4:c.331G>A	p.Asp111Asn	p.D111N	ENST00000301178	NM_021913.4	111	Gac/Aac																																																																															
CD79A	973	MSKCC	GRCh37	19	42383113	42383113	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2896	380	556	0	ENST00000221972.3:c.133A>G	p.Ser45Gly	p.S45G	ENST00000221972	NM_021601.3	45	Agc/Ggc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022656	31022656	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1338	372	478	0	ENST00000375687.4:c.2141C>A	p.Ser714Tyr	p.S714Y	ENST00000375687	NM_015338.5	714	tCc/tAc																																																																															
SRC	6714	MSKCC	GRCh37	20	36031750	36031750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1155	365	410	0	ENST00000358208.4:c.1579G>A	p.Glu527Lys	p.E527K	ENST00000358208		527	Gag/Aag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39916463	39916463	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	211	262	1	ENST00000378444.4:c.4540C>T	p.Arg1514Ter	p.R1514*	ENST00000378444	NM_001123385.1	1514	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410336	63410336	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	241	268	1	ENST00000330258.3:c.2831G>T	p.Ser944Ile	p.S944I	ENST00000330258	NM_152424.3	944	aGt/aTt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410585	63410585	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	484	285	0	ENST00000330258.3:c.2582G>C	p.Gly861Ala	p.G861A	ENST00000330258	NM_152424.3	861	gGc/gCc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411699	63411699	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	403	240	0	ENST00000330258.3:c.1468G>C	p.Val490Leu	p.V490L	ENST00000330258	NM_152424.3	490	Gtc/Ctc																																																																															
AR	367	MSKCC	GRCh37	X	66766312	66766314	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	160	115	0	ENST00000374690.3:c.1328_1330del	p.Glu443del	p.E443del	ENST00000374690	NM_000044.3	442	GAA/-																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	299	442	13	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564408	86564408	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	338	377	0	ENST00000274376.6:c.144del	p.Tyr49IlefsTer24	p.Y49Ifs*24	ENST00000274376	NM_002890.2	47	gCc/gc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541344	187541345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	202	399	0	ENST00000441802.2:c.6395dup	p.Leu2132PhefsTer3	p.L2132Ffs*3	ENST00000441802	NM_005245.3	2132	ttg/ttTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584580	187584581	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1307	340	456	0	ENST00000441802.2:c.3452dup	p.Asn1151LysfsTer4	p.N1151Kfs*4	ENST00000441802	NM_005245.3	1151	aat/aaAt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430251	181430251	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1462	91	254	0	ENST00000325404.1:c.107del	p.Asn36ThrfsTer10	p.N36Tfs*10	ENST00000325404	NM_003106.3	35	Aaa/aa																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204706	128204706	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2446	221	565	0	ENST00000341105.2:c.735del	p.Ile246SerfsTer80	p.I246Sfs*80	ENST00000341105	NM_032638.4	245	ccC/cc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47707974	47707975	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1300	306	438	2	ENST00000233146.2:c.2598_2599delinsTT	p.Met866_Glu867delinsIleTer	p.M866_E867delinsI*	ENST00000233146	NM_000251.2	866	atGGaa/atTTaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	313	365	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CCND2	894	MSKCC	GRCh37	12	4388008	4388008	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	130	415	1	ENST00000261254.3:c.494G>A	p.Arg165His	p.R165H	ENST00000261254	NM_001759.3	165	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428626	49428626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	167	500	1	ENST00000301067.7:c.10324G>A	p.Gly3442Ser	p.G3442S	ENST00000301067	NM_003482.3	3442	Ggc/Agc																																																																															
AURKA	6790	MSKCC	GRCh37	20	54948464	54948464	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	111	378	2	ENST00000312783.6:c.854G>T	p.Arg285Met	p.R285M	ENST00000312783	NM_198436.1	285	aGg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7572928	7572929	+	frameshift_variant,stop_lost	Frame_Shift_Del	DEL	CA	CA	-			P-0006953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	154	470	0	ENST00000269305.4:c.1180_1181del	p.Ter394ThrfsTer76	p.*394Tfs*76	ENST00000269305	NM_001126112.2	394	TGa/a																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0006983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	294	310	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347843	89347843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	440	551	0	ENST00000301030.4:c.5107G>A	p.Val1703Met	p.V1703M	ENST00000301030	NM_001256183.1	1703	Gtg/Atg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350485	15350485	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200957651		P-0006983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	127	240	1	ENST00000263377.2:c.3430G>A	p.Val1144Ile	p.V1144I	ENST00000263377	NM_058243.2	1144	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112175232	112175232	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	335	305	0	ENST00000257430.4:c.3942del	p.Arg1314SerfsTer7	p.R1314Sfs*7	ENST00000257430	NM_000038.5	1314	aGg/ag																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4101279	4101280	+	splice_acceptor_variant	Splice_Site	DEL	CT	CT	-			P-0006983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	128	402	0	ENST00000262948.5:c.529-2_529-1del		p.X177_splice	ENST00000262948	NM_030662.3	177																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	155	384	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0007044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	86	525	0	ENST00000269305.4:c.994-1G>T		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
CARD11	84433	MSKCC	GRCh37	7	2979391	2979391	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	231	377	0	ENST00000396946.4:c.856A>G	p.Ile286Val	p.I286V	ENST00000396946	NM_032415.4	286	Atc/Gtc																																																																															
RET	5979	MSKCC	GRCh37	10	43620429	43620429	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	113	482	0	ENST00000355710.3:c.3038G>A	p.Arg1013Lys	p.R1013K	ENST00000355710	NM_020975.4	1013	aGa/aAa																																																																															
SUFU	51684	MSKCC	GRCh37	10	104357048	104357048	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0007044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	103	387	0	ENST00000369902.3:c.908A>C	p.Lys303Thr	p.K303T	ENST00000369902	NM_016169.3	303	aAa/aCa																																																																															
ATM	472	MSKCC	GRCh37	11	108128226	108128226	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	102	464	2	ENST00000278616.4:c.2269G>T	p.Gly757Ter	p.G757*	ENST00000278616	NM_000051.3	757	Gga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108201096	108201096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	96	329	0	ENST00000278616.4:c.7463G>A	p.Cys2488Tyr	p.C2488Y	ENST00000278616	NM_000051.3	2488	tGt/tAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030470	47030470	+	intron_variant	Intron	SNP	G	G	T			P-0007044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	158	557	2	ENST00000329236.7:c.201+1573G>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
RAC1	5879	MSKCC	GRCh37	7	6426860	6426860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	131	456	0	ENST00000356142.4:c.53G>A	p.Cys18Tyr	p.C18Y	ENST00000356142	NM_018890.3	18	tGc/tAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	173	440	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	169	401	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39550422	39550423	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	71	279	1	ENST00000262039.4:c.531+9dupA		p.X177_splice	ENST00000262039	NM_002647.2	177																																																																																
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	137	257	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	139	305	0	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
ABL1	25	MSKCC	GRCh37	9	133760106	133760106	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2229071		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	27	422	0	ENST00000318560.5:c.2429C>T	p.Pro810Leu	p.P810L	ENST00000318560	NM_005157.4	810	cCg/cTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332272	70332273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	169	684	1	ENST00000373644.4:c.184dupA	p.Thr62AsnfsTer4	p.T62Nfs*4	ENST00000373644	NM_030625.2	59	-/A																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	19	122	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	183	368	7	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	178	379	2	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271190	38271190	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	101	263	0	ENST00000425967.3:c.2518C>T	p.Arg840Ter	p.R840*	ENST00000425967	NM_001174067.1	840	Cga/Tga																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	62	380	0	ENST00000303115.3:c.361delA	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
CIC	23152	MSKCC	GRCh37	19	42795016	42795016	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150818299		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	192	411	0	ENST00000575354.2:c.2096C>T	p.Ala699Val	p.A699V	ENST00000575354	NM_015125.3	699	gCg/gTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	230	415	3	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																															
BAP1	8314	MSKCC	GRCh37	3	52443613	52443613	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	212	365	0	ENST00000460680.1:c.79delG	p.Val27CysfsTer45	p.V27Cfs*45	ENST00000460680	NM_004656.3	27	Gtg/tg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	45	511	0	ENST00000264010.4:c.2070delA	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533905	63533905	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	115	264	0	ENST00000307078.5:c.1249delG	p.Ala417ArgfsTer41	p.A417Rfs*41	ENST00000307078	NM_004655.3	417	Gcg/cg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	88	240	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578397	7578398	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	131	309	0	ENST00000269305.4:c.532dupC	p.His178ProfsTer3	p.H178Pfs*3	ENST00000269305	NM_001126112.2	178	cac/cCac																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	34	80	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	189	455	5	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	134	381	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	37	448	2	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	231	804	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	160	358	2	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	253	726	1	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136799	2136799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	101	568	0	ENST00000219476.3:c.4916G>A	p.Arg1639His	p.R1639H	ENST00000219476	NM_000548.3	1639	cGc/cAc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	191	457	5	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41223240	41223240	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	142	320	0	ENST00000357654.3:c.4691T>C	p.Leu1564Pro	p.L1564P	ENST00000357654	NM_007294.3	1564	cTg/cCg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	245	520	3	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	263	593	6	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	152	405	3	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851255	156851255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	49	500	2	ENST00000524377.1:c.2212G>A	p.Asp738Asn	p.D738N	ENST00000524377	NM_002529.3	738	Gac/Aac																																																																															
CASP8	841	MSKCC	GRCh37	2	202139625	202139626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	213	456	2	ENST00000358485.4:c.790dup	p.Val264GlyfsTer13	p.V264Gfs*13	ENST00000358485	NM_001080125.1	262	-/G																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430901	181430901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	192	582	1	ENST00000325404.1:c.758del	p.Pro253LeufsTer21	p.P253Lfs*21	ENST00000325404	NM_003106.3	251	agC/ag																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	183	461	6	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463298	25463300	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	26	328	0	ENST00000264709.3:c.2193_2195delCTT	p.Phe732del	p.F732del	ENST00000264709	NM_175629.2	731	ttCTTt/ttt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514608	103514608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	171	368	1	ENST00000355739.4:c.1109G>A	p.Arg370His	p.R370H	ENST00000355739	NM_000123.3	370	cGt/cAt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931471	131931471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	129	292	2	ENST00000265335.6:c.2176C>T	p.Arg726Cys	p.R726C	ENST00000265335		726	Cgt/Tgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484261	57484261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	138	288	6	ENST00000371085.3:c.575C>T	p.Pro192Leu	p.P192L	ENST00000371085	NM_000516.4	192	cCg/cTg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285913	38285914	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCA			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	200	516	2	ENST00000425967.3:c.495_497dupTGA	p.Asp166dup	p.D166dup	ENST00000425967	NM_001174067.1	166	gac/gaTGAc																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736165	204736166	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	157	536	0	ENST00000302823.3:c.529dupT	p.Tyr177LeufsTer2	p.Y177Lfs*2	ENST00000302823	NM_005214.4	174	-/T																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533938	63533939	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	92	195	0	ENST00000307078.5:c.1214_1215dup	p.Gly406ArgfsTer53	p.G406Rfs*53	ENST00000307078	NM_004655.3	405	-/AG																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933400	39933400	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	168	487	0	ENST00000378444.4:c.1199del	p.Gly400AlafsTer42	p.G400Afs*42	ENST00000378444	NM_001123385.1	400	gGc/gc																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2494651	2494651	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	242	492	2	ENST00000355716.4:c.791T>C	p.Val264Ala	p.V264A	ENST00000355716	NM_003820.2	264	gTc/gCc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777114	9777114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	198	472	2	ENST00000377346.4:c.878C>A	p.Ala293Asp	p.A293D	ENST00000377346	NM_005026.3	293	gCc/gAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11259672	11259672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	221	422	3	ENST00000361445.4:c.4033C>T	p.Leu1345Phe	p.L1345F	ENST00000361445	NM_004958.3	1345	Ctc/Ttc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258016	16258016	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	149	374	0	ENST00000375759.3:c.5281A>G	p.Lys1761Glu	p.K1761E	ENST00000375759	NM_015001.2	1761	Aaa/Gaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089512	27089512	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	103	498	0	ENST00000324856.7:c.2468A>G	p.Tyr823Cys	p.Y823C	ENST00000324856	NM_006015.4	823	tAc/tGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094396	27094396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	194	367	2	ENST00000324856.7:c.3104C>T	p.Ala1035Val	p.A1035V	ENST00000324856	NM_006015.4	1035	gCc/gTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106327	27106327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	197	391	2	ENST00000324856.7:c.5938C>T	p.Arg1980Cys	p.R1980C	ENST00000324856	NM_006015.4	1980	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107132	27107132	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	136	200	0	ENST00000324856.7:c.6743A>T	p.His2248Leu	p.H2248L	ENST00000324856	NM_006015.4	2248	cAc/cTc																																																																															
MPL	4352	MSKCC	GRCh37	1	43803817	43803817	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs148434485		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	157	599	0	ENST00000372470.3:c.127C>T	p.Arg43Ter	p.R43*	ENST00000372470	NM_005373.2	43	Cga/Tga																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45799143	45799143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	217	511	1	ENST00000372115.3:c.248G>A	p.Arg83Gln	p.R83Q	ENST00000372115	NM_001048171.1	83	cGa/cAa																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78421008	78421008	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	173	314	0	ENST00000370768.2:c.1712A>G	p.Gln571Arg	p.Q571R	ENST00000370768	NM_003902.3	571	cAg/cGg																																																																															
PARP1	142	MSKCC	GRCh37	1	226564969	226564969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	163	428	2	ENST00000366794.5:c.1781C>T	p.Thr594Met	p.T594M	ENST00000366794	NM_001618.3	594	aCg/aTg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48028226	48028226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	202	522	0	ENST00000234420.5:c.3104G>A	p.Arg1035Gln	p.R1035Q	ENST00000234420	NM_000179.2	1035	cGa/cAa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030679	48030679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	152	451	0	ENST00000234420.5:c.3293G>A	p.Cys1098Tyr	p.C1098Y	ENST00000234420	NM_000179.2	1098	tGc/tAc																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111907671	111907671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	207	521	1	ENST00000393256.3:c.445G>A	p.Ala149Thr	p.A149T	ENST00000393256	NM_006538.4	149	Gcc/Acc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128038136	128038136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	229	419	2	ENST00000285398.2:c.1414C>T	p.Arg472Cys	p.R472C	ENST00000285398	NM_000122.1	472	Cgc/Tgc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198270084	198270084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	196	433	0	ENST00000335508.6:c.1352G>A	p.Arg451Gln	p.R451Q	ENST00000335508	NM_012433.2	451	cGa/cAa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198285851	198285851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	138	368	0	ENST00000335508.6:c.202G>A	p.Asp68Asn	p.D68N	ENST00000335508	NM_012433.2	68	Gat/Aat																																																																															
RAF1	5894	MSKCC	GRCh37	3	12650368	12650368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	171	396	1	ENST00000251849.4:c.478C>T	p.Leu160Phe	p.L160F	ENST00000251849	NM_002880.3	160	Ctc/Ttc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162920	47162920	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	169	452	2	ENST00000409792.3:c.3206T>C	p.Val1069Ala	p.V1069A	ENST00000409792	NM_014159.6	1069	gTt/gCt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940819	49940819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	419	706	4	ENST00000296474.3:c.224G>A	p.Arg75His	p.R75H	ENST00000296474	NM_002447.2	75	cGc/cAc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682380	52682380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	99	501	1	ENST00000394830.3:c.793C>T	p.Pro265Ser	p.P265S	ENST00000394830	NM_018313.4	265	Cct/Tct																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417882	138417882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	168	349	3	ENST00000289153.2:c.1637C>A	p.Pro546His	p.P546H	ENST00000289153	NM_006219.2	546	cCc/cAc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185190762	185190762	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	125	288	0	ENST00000265026.3:c.1644-1G>T		p.X548_splice	ENST00000265026	NM_004721.4	548																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1801241	1801241	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199740841		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	121	353	3	ENST00000260795.2:c.370C>T	p.Arg124Trp	p.R124W	ENST00000260795		124	Cgg/Tgg																																																																															
KIT	3815	MSKCC	GRCh37	4	55524239	55524239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	140	487	4	ENST00000288135.5:c.58G>A	p.Val20Ile	p.V20I	ENST00000288135	NM_000222.2	20	Gtc/Atc																																																																															
KDR	3791	MSKCC	GRCh37	4	55968100	55968100	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	177	427	0	ENST00000263923.4:c.2230G>T	p.Gly744Cys	p.G744C	ENST00000263923	NM_002253.2	744	Ggc/Tgc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66218785	66218785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	95	497	0	ENST00000273854.3:c.2273A>G	p.Asn758Ser	p.N758S	ENST00000273854	NM_004439.5	758	aAt/aGt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467842	66467842	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	185	425	0	ENST00000273854.3:c.427G>T	p.Gly143Ter	p.G143*	ENST00000273854	NM_004439.5	143	Gga/Tga																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84384712	84384712	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	96	343	0	ENST00000321945.7:c.731T>C	p.Val244Ala	p.V244A	ENST00000321945	NM_139076.2	244	gTa/gCa																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84391501	84391501	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	33	145	0	ENST00000321945.7:c.331A>G	p.Thr111Ala	p.T111A	ENST00000321945	NM_139076.2	111	Acg/Gcg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538277	187538277	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	119	407	1	ENST00000441802.2:c.8957G>T	p.Arg2986Met	p.R2986M	ENST00000441802	NM_005245.3	2986	aGg/aTg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38953624	38953624	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199645898		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	81	299	0	ENST00000357387.3:c.2729G>A	p.Arg910His	p.R910H	ENST00000357387	NM_152756.3	910	cGt/cAt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672801	86672801	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	164	353	0	ENST00000274376.6:c.2288A>G	p.Glu763Gly	p.E763G	ENST00000274376	NM_002890.2	763	gAa/gGa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672859	86672859	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	62	229	1	ENST00000274376.6:c.2344+2T>C		p.X782_splice	ENST00000274376	NM_002890.2	782																																																																																
APC	324	MSKCC	GRCh37	5	112151246	112151246	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	242	509	0	ENST00000257430.4:c.889A>G	p.Thr297Ala	p.T297A	ENST00000257430	NM_000038.5	297	Aca/Gca																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459822	149459822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	160	438	0	ENST00000286301.3:c.385C>T	p.Leu129Phe	p.L129F	ENST00000286301	NM_005211.3	129	Ctc/Ttc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149509421	149509421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	92	529	2	ENST00000261799.4:c.1478G>A	p.Ser493Asn	p.S493N	ENST00000261799	NM_002609.3	493	aGc/aAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057276	180057276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	134	470	2	ENST00000261937.6:c.462G>A	p.Met154Ile	p.M154I	ENST00000261937	NM_182925.4	154	atG/atA																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250754	26250754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1231	322	895	2	ENST00000446824.2:c.80G>A	p.Arg27His	p.R27H	ENST00000446824	NM_021018.2	27	cGc/cAc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30668387	30668387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	221	630	2	ENST00000376406.3:c.6125G>A	p.Cys2042Tyr	p.C2042Y	ENST00000376406	NM_014641.2	2042	tGc/tAc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288846	33288846	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	149	228	2	ENST00000374542.5:c.706T>G	p.Phe236Val	p.F236V	ENST00000374542	NM_001141970.1	236	Ttt/Gtt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94068015	94068015	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	228	676	3	ENST00000369303.4:c.947A>G	p.Tyr316Cys	p.Y316C	ENST00000369303	NM_004440.3	316	tAt/tGt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117687384	117687384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	178	419	3	ENST00000368508.3:c.2667G>A	p.Met889Ile	p.M889I	ENST00000368508	NM_002944.2	889	atG/atA																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971366	13971366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	41	369	0	ENST00000405192.2:c.563G>A	p.Arg188His	p.R188H	ENST00000405192	NM_001163147.1	188	cGc/cAc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468059	50468059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	114	309	1	ENST00000331340.3:c.1294C>T	p.His432Tyr	p.H432Y	ENST00000331340	NM_006060.4	432	Cac/Tac																																																																															
SMO	6608	MSKCC	GRCh37	7	128852243	128852243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149170801		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	45	444	1	ENST00000249373.3:c.2315G>A	p.Arg772His	p.R772H	ENST00000249373	NM_005631.4	772	cGc/cAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845414	151845414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	200	361	0	ENST00000262189.6:c.13598G>A	p.Arg4533Gln	p.R4533Q	ENST00000262189	NM_170606.2	4533	cGa/cAa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737414	145737414	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	115	276	1	ENST00000428558.2:c.3273G>T	p.Gln1091His	p.Q1091H	ENST00000428558	NM_004260.3	1091	caG/caT																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739038	145739038	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	227	420	1	ENST00000428558.2:c.2117A>G	p.Tyr706Cys	p.Y706C	ENST00000428558	NM_004260.3	706	tAc/tGc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87359921	87359921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	42	485	1	ENST00000277120.3:c.1229C>T	p.Thr410Ile	p.T410I	ENST00000277120		410	aCc/aTc																																																																															
ABL1	25	MSKCC	GRCh37	9	133760739	133760739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	191	518	0	ENST00000318560.5:c.3062G>A	p.Arg1021Gln	p.R1021Q	ENST00000318560	NM_005157.4	1021	cGg/cAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391913	139391913	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	241	578	1	ENST00000277541.6:c.6278T>C	p.Met2093Thr	p.M2093T	ENST00000277541	NM_017617.3	2093	aTg/aCg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395287	139395287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	107	216	2	ENST00000277541.6:c.5651C>T	p.Pro1884Leu	p.P1884L	ENST00000277541	NM_017617.3	1884	cCg/cTg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137232	64137232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	232	518	1	ENST00000334205.4:c.1664C>T	p.Ala555Val	p.A555V	ENST00000334205	NM_003942.2	555	gCg/gTg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633614	69633614	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			58	30	67	1	ENST00000334134.2:c.88G>T	p.Gly30Cys	p.G30C	ENST00000334134	NM_005247.2	30	Ggc/Tgc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180576	94180576	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	134	523	0	ENST00000323929.3:c.1592C>A	p.Ser531Tyr	p.S531Y	ENST00000323929	NM_005591.3	531	tCt/tAt																																																																															
BIRC3	330	MSKCC	GRCh37	11	102196012	102196012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	391	688	1	ENST00000263464.3:c.772C>T	p.Arg258Cys	p.R258C	ENST00000263464	NM_001165.4	258	Cgc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108100001	108100001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	96	306	0	ENST00000278616.4:c.282G>A	p.Met94Ile	p.M94I	ENST00000278616	NM_000051.3	94	atG/atA																																																																															
KDM5A	5927	MSKCC	GRCh37	12	493279	493279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	136	454	0	ENST00000399788.2:c.284C>A	p.Ala95Glu	p.A95E	ENST00000399788	NM_001042603.1	95	gCa/gAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398228	25398228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	155	370	1	ENST00000256078.4:c.91G>A	p.Glu31Lys	p.E31K	ENST00000256078	NM_033360.2	31	Gaa/Aaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420871	49420871	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	179	470	3	ENST00000301067.7:c.14878C>T	p.Arg4960Ter	p.R4960*	ENST00000301067	NM_003482.3	4960	Cga/Tga																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50492501	50492501	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	173	404	0	ENST00000394963.4:c.1397T>C	p.Met466Thr	p.M466T	ENST00000394963	NM_003076.4	466	aTg/aCg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121435424	121435424	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	95	481	0	ENST00000257555.6:c.1457A>G	p.Gln486Arg	p.Q486R	ENST00000257555		486	cAg/cGg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608473	28608473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	73	475	1	ENST00000241453.7:c.1669G>T	p.Val557Phe	p.V557F	ENST00000241453	NM_004119.2	557	Gtt/Ttt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28636175	28636175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	196	468	1	ENST00000241453.7:c.197C>T	p.Ala66Val	p.A66V	ENST00000241453	NM_004119.2	66	gCg/gTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910543	32910543	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	132	700	0	ENST00000380152.3:c.2051A>G	p.Gln684Arg	p.Q684R	ENST00000380152		684	cAg/cGg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972653	32972653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	110	330	1	ENST00000380152.3:c.10003G>A	p.Glu3335Lys	p.E3335K	ENST00000380152		3335	Gaa/Aaa																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134151	41134151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	238	688	2	ENST00000379561.5:c.1477G>T	p.Gly493Cys	p.G493C	ENST00000379561	NM_002015.3	493	Ggc/Tgc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41239857	41239857	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	201	515	1	ENST00000379561.5:c.493T>C	p.Tyr165His	p.Y165H	ENST00000379561	NM_002015.3	165	Tac/Cac																																																																															
DIS3	22894	MSKCC	GRCh37	13	73345226	73345226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	146	453	2	ENST00000377767.4:c.1663G>A	p.Val555Met	p.V555M	ENST00000377767	NM_014953.3	555	Gtg/Atg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524735	103524735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	133	350	1	ENST00000355739.4:c.2866G>A	p.Asp956Asn	p.D956N	ENST00000355739	NM_000123.3	956	Gac/Aac																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435138	110435138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	183	342	0	ENST00000375856.3:c.3263C>T	p.Ala1088Val	p.A1088V	ENST00000375856	NM_003749.2	1088	gCg/gTg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986922	36986922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	35	296	0	ENST00000354822.5:c.767A>G	p.Gln256Arg	p.Q256R	ENST00000354822	NM_001079668.2	256	cAg/cGg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95596439	95596439	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	171	363	0	ENST00000343455.3:c.529T>C	p.Cys177Arg	p.C177R	ENST00000343455	NM_177438.2	177	Tgt/Cgt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99482542	99482542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	196	516	1	ENST00000268035.6:c.3410C>T	p.Ala1137Val	p.A1137V	ENST00000268035	NM_000875.3	1137	gCt/gTt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2120493	2120493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	220	512	2	ENST00000219476.3:c.1753C>T	p.Arg585Cys	p.R585C	ENST00000219476	NM_000548.3	585	Cgt/Tgt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225955	2225955	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	123	366	1	ENST00000326181.6:c.1746+1G>A		p.X582_splice	ENST00000326181	NM_032271.2	582																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3778516	3778516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	157	701	1	ENST00000262367.5:c.6532C>T	p.His2178Tyr	p.H2178Y	ENST00000262367	NM_004380.2	2178	Cac/Tac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779017	3779017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	67	284	0	ENST00000262367.5:c.6031C>T	p.Pro2011Ser	p.P2011S	ENST00000262367	NM_004380.2	2011	Ccc/Tcc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788590	3788590	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	140	497	0	ENST00000262367.5:c.4364T>A	p.Ile1455Asn	p.I1455N	ENST00000262367	NM_004380.2	1455	aTt/aAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858775	9858775	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	110	295	0	ENST00000330684.3:c.2626A>G	p.Ile876Val	p.I876V	ENST00000330684	NM_001134407.1	876	Att/Gtt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836327	89836327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	239	537	1	ENST00000389301.3:c.2422C>T	p.Pro808Ser	p.P808S	ENST00000389301	NM_000135.2	808	Cct/Tct																																																																															
FANCA	2175	MSKCC	GRCh37	16	89858392	89858392	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	211	487	1	ENST00000389301.3:c.1168C>A	p.Leu390Ile	p.L390I	ENST00000389301	NM_000135.2	390	Ctc/Atc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17117001	17117001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	180	481	1	ENST00000285071.4:c.1708C>T	p.Arg570Cys	p.R570C	ENST00000285071	NM_144997.5	570	Cgc/Tgc																																																																															
NF1	4763	MSKCC	GRCh37	17	29528119	29528119	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	134	363	0	ENST00000358273.4:c.1127T>C	p.Met376Thr	p.M376T	ENST00000358273	NM_001042492.2	376	aTg/aCg																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804180	46804180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	258	621	0	ENST00000290295.7:c.827C>T	p.Ala276Val	p.A276V	ENST00000290295	NM_006361.5	276	gCc/gTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134201	11134201	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	49	401	0	ENST00000344626.4:c.2867T>C	p.Leu956Pro	p.L956P	ENST00000344626	NM_003072.3	956	cTg/cCg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145789	11145789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	173	521	1	ENST00000344626.4:c.4151C>T	p.Thr1384Met	p.T1384M	ENST00000344626	NM_003072.3	1384	aCg/aTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289660	15289660	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	213	622	2	ENST00000263388.2:c.3811C>A	p.Leu1271Met	p.L1271M	ENST00000263388	NM_000435.2	1271	Ctg/Atg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349600	15349600	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	154	370	2	ENST00000263377.2:c.3974G>T	p.Arg1325Met	p.R1325M	ENST00000263377	NM_058243.2	1325	aGg/aTg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18276988	18276988	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	206	405	2	ENST00000222254.8:c.1435A>G	p.Thr479Ala	p.T479A	ENST00000222254	NM_005027.3	479	Act/Gct																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867091	45867091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	148	306	0	ENST00000391945.4:c.1028G>A	p.Arg343Gln	p.R343Q	ENST00000391945	NM_000400.3	343	cGg/cAg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867145	45867145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	97	338	0	ENST00000391945.4:c.974C>T	p.Thr325Met	p.T325M	ENST00000391945	NM_000400.3	325	aCg/aTg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867491	45867491	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	71	379	1	ENST00000391945.4:c.815+2T>C		p.X272_splice	ENST00000391945	NM_000400.3	272																																																																																
DNMT3B	1789	MSKCC	GRCh37	20	31385069	31385069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	192	498	3	ENST00000328111.2:c.1454G>A	p.Arg485Gln	p.R485Q	ENST00000328111	NM_006892.3	485	cGa/cAa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46275913	46275913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	203	739	1	ENST00000371998.3:c.3349G>A	p.Ala1117Thr	p.A1117T	ENST00000371998		1117	Gca/Aca																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42843873	42843873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	71	445	0	ENST00000398585.3:c.1046C>T	p.Ala349Val	p.A349V	ENST00000398585	NM_001135099.1	349	gCg/gTg																																																																															
NF2	4771	MSKCC	GRCh37	22	30070869	30070869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	212	511	0	ENST00000338641.4:c.1385G>A	p.Arg462His	p.R462H	ENST00000338641	NM_000268.3	462	cGc/cAc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222384	53222384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	154	529	5	ENST00000375401.3:c.4448G>A	p.Arg1483Gln	p.R1483Q	ENST00000375401	NM_004187.3	1483	cGg/cAg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227807	53227807	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	213	527	2	ENST00000375401.3:c.2381T>C	p.Leu794Pro	p.L794P	ENST00000375401	NM_004187.3	794	cTg/cCg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245008	53245008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	91	635	2	ENST00000375401.3:c.932G>A	p.Arg311Lys	p.R311K	ENST00000375401	NM_004187.3	311	aGg/aAg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53246988	53246988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	180	570	0	ENST00000375401.3:c.512C>T	p.Ala171Val	p.A171V	ENST00000375401	NM_004187.3	171	gCc/gTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412806	63412806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	157	544	1	ENST00000330258.3:c.361C>T	p.Pro121Ser	p.P121S	ENST00000330258	NM_152424.3	121	Cct/Tct																																																																															
AR	367	MSKCC	GRCh37	X	66766208	66766208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	100	272	2	ENST00000374690.3:c.1220G>A	p.Arg407His	p.R407H	ENST00000374690	NM_000044.3	407	cGc/cAc																																																																															
AR	367	MSKCC	GRCh37	X	66766426	66766426	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	38	176	0	ENST00000374690.3:c.1438C>A	p.Pro480Thr	p.P480T	ENST00000374690	NM_000044.3	480	Ccc/Acc																																																																															
ATRX	546	MSKCC	GRCh37	X	76938174	76938174	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	49	531	0	ENST00000373344.5:c.2574del	p.Gly859GlufsTer10	p.G859Efs*10	ENST00000373344	NM_000489.3	858	aaA/aa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47698141	47698145	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAC	AAAAC	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	70	460	1	ENST00000233146.2:c.1700_1704del	p.Lys567ArgfsTer3	p.K567Rfs*3	ENST00000233146	NM_000251.2	567	AAAACa/a																																																																															
ERG	2078	MSKCC	GRCh37	21	39775476	39775477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	147	395	0	ENST00000288319.7:c.543dup	p.Ser182GlnfsTer26	p.S182Qfs*26	ENST00000288319	NM_182918.3	181	-/C																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436011	110436011	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	71	316	2	ENST00000375856.3:c.2390del	p.Gly797AlafsTer30	p.G797Afs*30	ENST00000375856	NM_003749.2	797	gGc/gc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52588798	52588798	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	178	458	4	ENST00000394830.3:c.4230del	p.Pro1411LeufsTer21	p.P1411Lfs*21	ENST00000394830	NM_018313.4	1410	ggG/gg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295203	1295204	+	upstream_gene_variant	5'Flank	INS	-	-	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	72	246	0				ENST00000310581	NM_198253.2																																																																																	
PIK3R3	8503	MSKCC	GRCh37	1	46531806	46531807	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	149	502	0	ENST00000262741.5:c.540dupA	p.Leu181ThrfsTer13	p.L181Tfs*13	ENST00000262741	NM_003629.3	180	-/A																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420988	49420989	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	85	442	0	ENST00000301067.7:c.14760dup	p.Ala4922GlyfsTer10	p.A4922Gfs*10	ENST00000301067	NM_003482.3	4920	-/C																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630605	187630605	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	158	406	0	ENST00000441802.2:c.377del	p.Asn126IlefsTer20	p.N126Ifs*20	ENST00000441802	NM_005245.3	126	aAt/at																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771987	135771988	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs118203743		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	34	148	1	ENST00000298552.3:c.3127_3129dup	p.Ser1043dup	p.S1043dup	ENST00000298552	NM_001162426.1	1043	-/AGC																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116262	209116263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs754375602		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	84	327	0	ENST00000345146.2:c.13dup	p.Ile5AsnfsTer13	p.I5Nfs*13	ENST00000345146	NM_005896.2	5	atc/aAtc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5216758	5216758	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	48	479	0	ENST00000357368.4:c.4069del	p.Leu1357SerfsTer59	p.L1357Sfs*59	ENST00000357368	NM_002850.3	1357	Ctc/tc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23635362	23635363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	36	451	0	ENST00000261584.4:c.2800_2801dup	p.Ala935Ter	p.A935*	ENST00000261584	NM_024675.3	934	gta/gtGTa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828228	72828228	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	193	792	1	ENST00000268489.5:c.8353del	p.Leu2785SerfsTer4	p.L2785Sfs*4	ENST00000268489	NM_006885.3	2785	Ctc/tc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443668	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	184	457	0	ENST00000301067.7:c.3703_3704del	p.Gly1235TrpfsTer14	p.G1235Wfs*14	ENST00000301067	NM_003482.3	1235	GGt/t																																																																															
BRCA1	672	MSKCC	GRCh37	17	41247906	41247907	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	142	500	0	ENST00000357654.3:c.626dup	p.Gln210SerfsTer6	p.Q210Sfs*6	ENST00000357654	NM_007294.3	209	cct/ccCt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11273523	11273524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	181	494	2	ENST00000361445.4:c.3217dup	p.Gln1073ProfsTer13	p.Q1073Pfs*13	ENST00000361445	NM_004958.3	1073	cag/cCag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	128	419	0	ENST00000261937.6:c.89dupC	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020764	37020764	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	148	531	1	ENST00000358127.4:c.81del	p.Phe27LeufsTer2	p.F27Lfs*2	ENST00000358127	NM_001280556.1	27	ttT/tt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287213	33287213	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	218	316	1	ENST00000374542.5:c.1884delC	p.Cys629AlafsTer16	p.C629Afs*16	ENST00000374542	NM_001141970.1	628	ccC/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426786	49426788	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	83	245	0	ENST00000301067.7:c.11700_11702del	p.Gln3905del	p.Q3905del	ENST00000301067	NM_003482.3	3900	ctTCAg/ctg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528592	157528594	+	inframe_deletion	In_Frame_Del	DEL	GTC	GTC	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	138	328	0	ENST00000346085.5:c.6320_6322del	p.Arg2107del	p.R2107del	ENST00000346085	NM_020732.3	2106	aGTCgt/agt																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383944	84383944	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	87	371	0	ENST00000321945.7:c.908del	p.Asn303IlefsTer17	p.N303Ifs*17	ENST00000321945	NM_139076.2	303	aAt/at																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945008	31945008	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	75	646	0	ENST00000340398.3:c.93delC	p.Ser32LeufsTer5	p.S32Lfs*5	ENST00000340398	NM_001013699.2	31	ccC/cc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660807	227660808	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	74	331	1	ENST00000305123.5:c.2645_2647dupAGC	p.Gln882dup	p.Q882dup	ENST00000305123	NM_005544.2	882	ccc/cAGCcc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18272109	18272123	+	inframe_deletion	In_Frame_Del	DEL	CCGGCGCTGGAGCCA	CCGGCGCTGGAGCCA	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	26	33	0	ENST00000222254.8:c.622_636del	p.Ala208_Pro212del	p.A208_P212del	ENST00000222254	NM_005027.3	207	CCGGCGCTGGAGCCA/-																																																																															
JUN	3725	MSKCC	GRCh37	1	59247894	59247894	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1218	493	563	1	ENST00000371222.2:c.849del	p.Val284Ter	p.V284*	ENST00000371222	NM_002228.3	283	aaA/aa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630434	187630435	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	223	570	3	ENST00000441802.2:c.547dup	p.Glu183GlyfsTer7	p.E183Gfs*7	ENST00000441802	NM_005245.3	183	gaa/gGaa																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133737	41133738	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	216	738	0	ENST00000379561.5:c.1890dup	p.Asn631Ter	p.N631*	ENST00000379561	NM_002015.3	630	-/T																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56170949	56170949	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	78	368	0	ENST00000399503.3:c.1780del	p.Ala594ProfsTer62	p.A594Pfs*62	ENST00000399503	NM_005921.1	593	Ggg/gg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185190819	185190819	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	84	460	0	ENST00000265026.3:c.1703delC	p.Pro568LeufsTer39	p.P568Lfs*39	ENST00000265026	NM_004721.4	567	tCc/tc																																																																															
AR	367	MSKCC	GRCh37	X	66765489	66765489	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	64	448	1	ENST00000374690.3:c.503del	p.Gly168AlafsTer7	p.G168Afs*7	ENST00000374690	NM_000044.3	167	ctG/ct																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18524120	18524120	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	76	380	1	ENST00000266497.5:c.1635del	p.Glu548LysfsTer2	p.E548Kfs*2	ENST00000266497		544	aaT/aa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641388	18641389	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	72	239	0	ENST00000266497.5:c.2393dup	p.Asn798LysfsTer5	p.N798Kfs*5	ENST00000266497		796	cta/ctAa																																																																															
INSR	3643	MSKCC	GRCh37	19	7119460	7119461	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	AG			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	136	437	0	ENST00000302850.5:c.3793_3794insCT	p.Val1265AlafsTer16	p.V1265Afs*16	ENST00000302850	NM_000208.2	1265	gtc/gCTtc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243444	46243444	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	200	609	0	ENST00000334344.6:c.1800del	p.Lys600AsnfsTer47	p.K600Nfs*47	ENST00000334344	NM_152641.2	599	gtA/gt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44928976	44928976	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	303	695	2	ENST00000377967.4:c.2080del	p.Ala694LeufsTer21	p.A694Lfs*21	ENST00000377967	NM_021140.2	692	caG/ca																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103513936	103513936	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	170	536	0	ENST00000355739.4:c.755del	p.Lys252ArgfsTer3	p.K252Rfs*3	ENST00000355739	NM_000123.3	251	cAa/ca																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499363	89499363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	157	385	1	ENST00000336596.2:c.2538delC	p.Met847TrpfsTer10	p.M847Wfs*10	ENST00000336596	NM_005233.5	845	Ccc/cc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024636	31024637	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	155	518	0	ENST00000375687.4:c.4127dup	p.Pro1377SerfsTer3	p.P1377Sfs*3	ENST00000375687	NM_015338.5	1374	gtg/gtGg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271331	18271331	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	221	480	0	ENST00000222254.8:c.377del	p.Pro126LeufsTer4	p.P126Lfs*4	ENST00000222254	NM_005027.3	125	Ccc/cc																																																																															
CIC	23152	MSKCC	GRCh37	19	42797204	42797205	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	29	359	0	ENST00000575354.2:c.3570dup	p.Ser1191ValfsTer3	p.S1191Vfs*3	ENST00000575354	NM_015125.3	1189	gtg/gtGg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2191141	2191141	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	223	521	3	ENST00000398665.3:c.399delC	p.Glu134ArgfsTer14	p.E134Rfs*14	ENST00000398665	NM_032482.2	132	tCc/tc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627306	37627307	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	187	481	0	ENST00000447079.4:c.1221_1222insTGC	p.Ala407_Ala408insCys	p.A407_A408insC	ENST00000447079	NM_015083.1	407	-/TGC																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202148	67202148	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	146	379	4	ENST00000312629.5:c.1255del	p.Arg419GlyfsTer75	p.R419Gfs*75	ENST00000312629	NM_003952.2	417	agC/ag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118380758	118380758	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	183	495	1	ENST00000534358.1:c.11001del	p.Lys3667AsnfsTer30	p.K3667Nfs*30	ENST00000534358	NM_005933.3	3666	Aaa/aa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852611	63852611	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	174	320	1	ENST00000279873.7:c.3393del	p.Phe1131LeufsTer20	p.F1131Lfs*20	ENST00000279873	NM_032199.2	1130	aTt/at																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527651	157527652	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	207	428	2	ENST00000346085.5:c.5381dup	p.Asn1795GlufsTer7	p.N1795Efs*7	ENST00000346085	NM_020732.3	1792	-/A																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027151	71027152	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	221	384	0	ENST00000318789.4:c.1175_1176insGA	p.Lys393ThrfsTer23	p.K393Tfs*23	ENST00000318789	NM_032682.5	392	tcc/tcGAc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085825	16085825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	52	444	0	ENST00000281043.3:c.1005del	p.Ser336LeufsTer15	p.S336Lfs*15	ENST00000281043	NM_005378.4	334	gCc/gc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523008	25523009	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GG			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	198	541	1	ENST00000264709.3:c.175_176dup	p.Val60ArgfsTer13	p.V60Rfs*13	ENST00000264709	NM_175629.2	59	ccg/ccCCg																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2488147	2488147	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	237	435	4	ENST00000355716.4:c.48del	p.Thr18ProfsTer4	p.T18Pfs*4	ENST00000355716	NM_003820.2	15	aCc/ac																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211550	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	169	390	8	ENST00000331920.6:c.3605_3606delinsT	p.Pro1202LeufsTer53	p.P1202Lfs*53	ENST00000331920	NM_000264.3	1202	cCC/cT																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0007525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	97	263	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	57	313	1	ENST00000269305.4:c.596G>A	p.Gly199Glu	p.G199E	ENST00000269305	NM_001126112.2	199	gGa/gAa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060594	38060618	+	frameshift_variant	Frame_Shift_Del	DEL	GGAATACACACCTTGGTAGTACGCC	GGAATACACACCTTGGTAGTACGCC	-			P-0007525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	44	378	0	ENST00000250448.2:c.1371_1395del	p.Ala458AspfsTer4	p.A458Dfs*4	ENST00000250448	NM_004496.3	457	ccGGCGTACTACCAAGGTGTGTATTCC/cc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52597494	52597497	+	frameshift_variant	Frame_Shift_Del	DEL	AGGA	AGGA	-			P-0007525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	16	234	0	ENST00000394830.3:c.3813_3816del	p.Pro1272ArgfsTer15	p.P1272Rfs*15	ENST00000394830	NM_018313.4	1271	gtTCCT/gt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52595775	52595781	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CTATTTA	CTATTTA	-			P-0007525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	30	303	0	ENST00000394830.3:c.4132+2_4132+8del		p.X1378_splice	ENST00000394830	NM_018313.4	1378																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	59	314	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	19	239	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061250	38061250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	88	513	2	ENST00000250448.2:c.739C>T	p.His247Tyr	p.H247Y	ENST00000250448	NM_004496.3	247	Cac/Tac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105892	27105892	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	99	323	0	ENST00000324856.7:c.5503C>T	p.Gln1835Ter	p.Q1835*	ENST00000324856	NM_006015.4	1835	Cag/Tag																																																																															
STK40	83931	MSKCC	GRCh37	1	36820971	36820971	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766507697		P-0007741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	94	501	0	ENST00000373129.3:c.406C>T	p.Arg136Cys	p.R136C	ENST00000373129	NM_032017.1	136	Cgc/Tgc																																																																															
CDH1	999	MSKCC	GRCh37	16	68845584	68845586	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CAG	CAG	-			P-0007741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	67	287	0	ENST00000261769.5:c.833-3_833-1del		p.X278_splice	ENST00000261769	NM_004360.3	278																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	107	341	0	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	204	563	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16263754	16263754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	138	394	0	ENST00000375759.3:c.10123G>A	p.Gly3375Ser	p.G3375S	ENST00000375759	NM_015001.2	3375	Ggt/Agt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	193	486	4	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	66	264	1	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	38	330	3	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																															
BAP1	8314	MSKCC	GRCh37	3	52443613	52443613	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	91	390	0	ENST00000460680.1:c.79delG	p.Val27CysfsTer45	p.V27Cfs*45	ENST00000460680	NM_004656.3	27	Gtg/tg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14026115	14026116	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	112	586	0	ENST00000311895.7:c.1081dup	p.Met361AsnfsTer4	p.M361Nfs*4	ENST00000311895	NM_005236.2	359	gaa/gAaa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914070	32914070	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	148	930	0	ENST00000380152.3:c.5583delA	p.Val1862Ter	p.V1862*	ENST00000380152		1860	Aaa/aa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771923	135771923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	110	323	0	ENST00000298552.3:c.3194C>T	p.Thr1065Met	p.T1065M	ENST00000298552	NM_001162426.1	1065	aCg/aTg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	51	549	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737107	145737109	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	142	490	0	ENST00000428558.2:c.3457_3459delGAG	p.Glu1153del	p.E1153del	ENST00000428558	NM_004260.3	1153	GAG/-																																																																															
MITF	4286	MSKCC	GRCh37	3	70008501	70008501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147148433		P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	146	400	1	ENST00000352241.4:c.1091G>A	p.Arg364His	p.R364H	ENST00000352241	NM_198159.2	364	cGc/cAc																																																																															
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	136	385	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444378	49444378	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	111	334	1	ENST00000301067.7:c.2993del	p.Pro998LeufsTer2	p.P998Lfs*2	ENST00000301067	NM_003482.3	998	cCt/ct																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615698	1615698	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1412	100	899	0	ENST00000344749.5:c.1573delC	p.Arg525GlyfsTer18	p.R525Gfs*18	ENST00000344749	NM_001136139.2	525	Cgg/gg																																																																															
ATM	472	MSKCC	GRCh37	11	108114842	108114842	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145355104		P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	80	442	1	ENST00000278616.4:c.659C>T	p.Ala220Val	p.A220V	ENST00000278616	NM_000051.3	220	gCg/gTg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	202	575	4	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339093	65339093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	177	536	0	ENST00000342505.4:c.443C>A	p.Pro148His	p.P148H	ENST00000342505	NM_002227.2	148	cCt/cAt																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430832	78430832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	168	454	0	ENST00000370768.2:c.557C>T	p.Ala186Val	p.A186V	ENST00000370768	NM_003902.3	186	gCa/gTa																																																																															
ALK	238	MSKCC	GRCh37	2	29450539	29450539	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	47	419	0	ENST00000389048.3:c.2816-1G>T		p.X939_splice	ENST00000389048	NM_004304.4	939																																																																																
BARD1	580	MSKCC	GRCh37	2	215646041	215646041	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	48	485	0	ENST00000260947.4:c.557G>C	p.Ser186Thr	p.S186T	ENST00000260947	NM_000465.2	186	aGt/aCt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37081727	37081727	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	203	480	0	ENST00000231790.2:c.1609C>T	p.Gln537Ter	p.Q537*	ENST00000231790	NM_000249.3	537	Cag/Tag																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934752	49934752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	215	593	1	ENST00000296474.3:c.2144G>T	p.Arg715Leu	p.R715L	ENST00000296474	NM_002447.2	715	cGg/cTg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49939835	49939835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1190	241	773	0	ENST00000296474.3:c.1208C>T	p.Ser403Leu	p.S403L	ENST00000296474	NM_002447.2	403	tCg/tTg																																																																															
KIT	3815	MSKCC	GRCh37	4	55595603	55595603	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	78	393	0	ENST00000288135.5:c.2093C>A	p.Ala698Glu	p.A698E	ENST00000288135	NM_000222.2	698	gCa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112178790	112178790	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	56	540	0	ENST00000257430.4:c.7499A>G	p.Gln2500Arg	p.Q2500R	ENST00000257430	NM_000038.5	2500	cAg/cGg																																																																															
APC	324	MSKCC	GRCh37	5	112178936	112178936	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199539353		P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	108	419	0	ENST00000257430.4:c.7645C>T	p.Arg2549Cys	p.R2549C	ENST00000257430	NM_000038.5	2549	Cgt/Tgt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149509322	149509322	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	33	307	0	ENST00000261799.4:c.1577A>G	p.His526Arg	p.H526R	ENST00000261799	NM_002609.3	526	cAc/cGc																																																																															
NPM1	4869	MSKCC	GRCh37	5	170827167	170827167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	48	556	0	ENST00000296930.5:c.535G>A	p.Asp179Asn	p.D179N	ENST00000296930	NM_002520.6	179	Gat/Aat																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741800	145741800	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	196	434	1	ENST00000428558.2:c.703C>T	p.Gln235Ter	p.Q235*	ENST00000428558	NM_004260.3	235	Cag/Tag																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900201	101900201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	128	638	2	ENST00000374994.4:c.635G>A	p.Gly212Asp	p.G212D	ENST00000374994	NM_004612.2	212	gGc/gAc																																																																															
ABL1	25	MSKCC	GRCh37	9	133729594	133729594	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	178	576	0	ENST00000318560.5:c.223A>G	p.Ser75Gly	p.S75G	ENST00000318560	NM_005157.4	75	Agt/Ggt																																																																															
RET	5979	MSKCC	GRCh37	10	43601873	43601873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	159	422	0	ENST00000355710.3:c.917C>T	p.Ala306Val	p.A306V	ENST00000355710	NM_020975.4	306	gCa/gTa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63759873	63759873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	53	474	0	ENST00000279873.7:c.526G>A	p.Val176Met	p.V176M	ENST00000279873	NM_032199.2	176	Gtg/Atg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123246907	123246907	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	170	630	0	ENST00000358487.5:c.2018A>G	p.Glu673Gly	p.E673G	ENST00000358487	NM_000141.4	673	gAa/gGa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375594	118375594	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs191446381		P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	48	326	0	ENST00000534358.1:c.8987A>G	p.His2996Arg	p.H2996R	ENST00000534358	NM_005933.3	2996	cAt/cGt																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50484069	50484069	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	163	518	1	ENST00000394963.4:c.919A>T	p.Ile307Phe	p.I307F	ENST00000394963	NM_003076.4	307	Atc/Ttc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489085	56489085	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	54	504	0	ENST00000267101.3:c.1904T>A	p.Val635Glu	p.V635E	ENST00000267101	NM_001982.3	635	gTg/gAg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856019	111856019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	58	393	0	ENST00000341259.2:c.70C>T	p.Arg24Trp	p.R24W	ENST00000341259	NM_005475.2	24	Cgg/Tgg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856116	111856116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	173	401	0	ENST00000341259.2:c.167C>T	p.Ala56Val	p.A56V	ENST00000341259	NM_005475.2	56	gCg/gTg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562282	21562282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	45	469	0	ENST00000382592.4:c.1637C>T	p.Ala546Val	p.A546V	ENST00000382592	NM_014572.2	546	gCg/gTg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563444	21563444	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	188	543	0	ENST00000382592.4:c.476-1G>T		p.X159_splice	ENST00000382592	NM_014572.2	159																																																																																
RB1	5925	MSKCC	GRCh37	13	48878068	48878068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	50	135	0	ENST00000267163.4:c.20G>A	p.Arg7Gln	p.R7Q	ENST00000267163	NM_000321.2	7	cGa/cAa																																																																															
RAD51	5888	MSKCC	GRCh37	15	40993338	40993338	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145617142		P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	151	565	0	ENST00000267868.3:c.164C>T	p.Ala55Val	p.A55V	ENST00000267868	NM_002875.4	55	gCg/gTg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99472849	99472849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	174	512	1	ENST00000268035.6:c.2845G>A	p.Gly949Arg	p.G949R	ENST00000268035	NM_000875.3	949	Gga/Aga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2112583	2112583	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	290	435	0	ENST00000219476.3:c.1343T>C	p.Leu448Pro	p.L448P	ENST00000219476	NM_000548.3	448	cTg/cCg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857151	9857151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	165	602	0	ENST00000330684.3:c.4250G>A	p.Arg1417Gln	p.R1417Q	ENST00000330684	NM_001134407.1	1417	cGg/cAg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67662450	67662450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	199	594	0	ENST00000264010.4:c.1696C>T	p.Arg566Cys	p.R566C	ENST00000264010	NM_006565.3	566	Cgt/Tgt																																																																															
CDH1	999	MSKCC	GRCh37	16	68842703	68842703	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	170	615	1	ENST00000261769.5:c.639G>A	p.Trp213Ter	p.W213*	ENST00000261769	NM_004360.3	213	tgG/tgA																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805956	89805956	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	106	329	1	ENST00000389301.3:c.3940A>G	p.Arg1314Gly	p.R1314G	ENST00000389301	NM_000135.2	1314	Agg/Ggg																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428245	33428245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	127	454	1	ENST00000335858.7:c.542C>T	p.Ala181Val	p.A181V	ENST00000335858	NM_133629.2	181	gCg/gTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37863341	37863341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	181	596	0	ENST00000269571.5:c.172G>A	p.Gly58Arg	p.G58R	ENST00000269571		58	Gga/Aga																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40354428	40354428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1064	224	946	0	ENST00000293328.3:c.2167G>A	p.Ala723Thr	p.A723T	ENST00000293328	NM_012448.3	723	Gcc/Acc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437606	56437606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886926322		P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	101	361	3	ENST00000407977.2:c.856C>T	p.Arg286Trp	p.R286W	ENST00000407977		286	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439930	56439930	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2285990		P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	92	254	0	ENST00000407977.2:c.662G>A	p.Arg221Gln	p.R221Q	ENST00000407977		221	cGg/cAg																																																																															
CTD-2561B21.3	0	MSKCC	GRCh37	17	78935208	78935208	+	splice_donor_variant,non_coding_transcript_variant	Splice_Site	SNP	A	A	G			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	42	449	1	ENST00000571591.1:n.304+2T>C		p.X102_splice	ENST00000571591		102																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15281256	15281256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	134	289	0	ENST00000263388.2:c.5000G>A	p.Arg1667His	p.R1667H	ENST00000263388	NM_000435.2	1667	cGc/cAc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15379824	15379824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	62	576	1	ENST00000263377.2:c.315G>T	p.Met105Ile	p.M105I	ENST00000263377	NM_058243.2	105	atG/atT																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918720	50918720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	141	374	1	ENST00000440232.2:c.2590G>A	p.Ala864Thr	p.A864T	ENST00000440232	NM_002691.3	864	Gca/Aca																																																																															
PAK7	57144	MSKCC	GRCh37	20	9543608	9543608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	188	560	1	ENST00000353224.5:c.1546G>A	p.Gly516Ser	p.G516S	ENST00000353224	NM_177990.2	516	Ggc/Agc																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30309666	30309666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	54	432	0	ENST00000307677.4:c.356C>T	p.Ala119Val	p.A119V	ENST00000307677	NM_138578.1	119	gCa/gTa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923083	39923083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	64	410	0	ENST00000378444.4:c.3625C>T	p.Arg1209Cys	p.R1209C	ENST00000378444	NM_001123385.1	1209	Cgc/Tgc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030463	47030463	+	intron_variant	Intron	SNP	C	C	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	236	315	0	ENST00000329236.7:c.201+1566C>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
SETD2	29072	MSKCC	GRCh37	3	47163711	47163712	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	34	466	0	ENST00000409792.3:c.2414_2415del	p.Cys805Ter	p.C805*	ENST00000409792	NM_014159.6	805	tGT/t																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448295	56448296	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	103	232	0	ENST00000407977.2:c.351_352insAC	p.Pro118ThrfsTer41	p.P118Tfs*41	ENST00000407977		117	-/AC																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983227	149983228	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	112	507	0	ENST00000253339.5:c.3030dupT	p.Lys1011Ter	p.K1011*	ENST00000253339		1010	-/T																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63553979	63553980	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	185	524	0	ENST00000307078.5:c.759_760del	p.Lys253AsnfsTer15	p.K253Nfs*15	ENST00000307078	NM_004655.3	253	aaAAct/aact																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500894	8500894	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	115	464	0	ENST00000356435.5:c.1988del	p.Leu663TrpfsTer25	p.L663Wfs*25	ENST00000356435		663	tTg/tg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151848015	151848017	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	114	469	0	ENST00000262189.6:c.12742_12744del	p.Ser4248del	p.S4248del	ENST00000262189	NM_170606.2	4248	TCA/-																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199761	138199763	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	161	564	0	ENST00000237289.4:c.1183_1185del	p.Phe395del	p.F395del	ENST00000237289	NM_001270507.1	393	ccCTTc/ccc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64128984	64128984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	197	490	0	ENST00000334205.4:c.618del	p.Glu207LysfsTer26	p.E207Kfs*26	ENST00000334205	NM_003942.2	205	gCc/gc																																																																															
EP300	2033	MSKCC	GRCh37	22	41533685	41533689	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTC	CCCTC	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	162	543	0	ENST00000263253.7:c.1653_1657del	p.Ser552GlyfsTer63	p.S552Gfs*63	ENST00000263253	NM_001429.3	551	CCCTCc/c																																																																															
EP300	2033	MSKCC	GRCh37	22	41489075	41489076	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	124	400	0	ENST00000263253.7:c.70_71del	p.Ser24GlyfsTer14	p.S24Gfs*14	ENST00000263253	NM_001429.3	23	CTc/c																																																																															
BLM	641	MSKCC	GRCh37	15	91310207	91310208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	97	715	0	ENST00000355112.3:c.2268dup	p.Asp757ArgfsTer18	p.D757Rfs*18	ENST00000355112	NM_000057.2	754	tca/tcAa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569765	95569765	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	124	416	2	ENST00000343455.3:c.3968del	p.Leu1323Ter	p.L1323*	ENST00000343455	NM_177438.2	1323	tTa/ta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			58	69	378	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	46	355	0	ENST00000269305.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000269305	NM_001126112.2	130	Ctc/Ttc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10270693	10270693	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0008433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	56	487	1	ENST00000340748.4:c.1041+1G>T		p.X347_splice	ENST00000340748		347																																																																																
BRCA2	675	MSKCC	GRCh37	13	32914933	32914934	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs80359589		P-0008433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	104	660	0	ENST00000380152.3:c.6443_6444del	p.Ser2148TyrfsTer2	p.S2148Yfs*2	ENST00000380152		2147	caCTct/cact																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874261	151874261	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0008470-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	289	310	0	ENST00000262189.6:c.8277T>G	p.Tyr2759Ter	p.Y2759*	ENST00000262189	NM_170606.2	2759	taT/taG																																																																															
WT1	7490	MSKCC	GRCh37	11	32410657	32410657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008470-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	138	442	0	ENST00000332351.3:c.1501C>T	p.Arg501Cys	p.R501C	ENST00000332351	NM_024426.4	501	Cgc/Tgc																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22221703	22221703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008470-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			58	51	128	0	ENST00000215832.6:c.28G>A	p.Gly10Ser	p.G10S	ENST00000215832	NM_002745.4	10	Ggc/Agc																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495642	72495662	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTACCTGGTGGAGGTGCCTT	AGTACCTGGTGGAGGTGCCTT	-			P-0008470-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	52	247	0	ENST00000477973.2:c.408_423+5delAAGGCACCTCCACCAGGTACT		p.X136_splice	ENST00000477973	NM_012234.5	136																																																																																
MCL1	4170	MSKCC	GRCh37	1	150549855	150549855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	64	338	0	ENST00000369026.2:c.1049G>A	p.Arg350Lys	p.R350K	ENST00000369026	NM_021960.4	350	aGa/aAa																																																																															
ALK	238	MSKCC	GRCh37	2	29940459	29940459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	53	457	0	ENST00000389048.3:c.772C>T	p.His258Tyr	p.H258Y	ENST00000389048	NM_004304.4	258	Cat/Tat																																																																															
ALK	238	MSKCC	GRCh37	2	29940515	29940515	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	75	662	0	ENST00000389048.3:c.716A>G	p.Asp239Gly	p.D239G	ENST00000389048	NM_004304.4	239	gAt/gGt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178097161	178097161	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	40	356	0	ENST00000397062.3:c.553G>C	p.Glu185Gln	p.E185Q	ENST00000397062	NM_006164.4	185	Gag/Cag																																																																															
CUL3	8452	MSKCC	GRCh37	2	225342959	225342959	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	188	654	0	ENST00000264414.4:c.2133G>C	p.Met711Ile	p.M711I	ENST00000264414	NM_003590.4	711	atG/atC																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138403538	138403538	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	323	612	0	ENST00000289153.2:c.2244G>C	p.Gln748His	p.Q748H	ENST00000289153	NM_006219.2	748	caG/caC																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968287	2968287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	130	502	0	ENST00000396946.4:c.1699C>T	p.Pro567Ser	p.P567S	ENST00000396946	NM_032415.4	567	Ccc/Tcc																																																																															
MET	4233	MSKCC	GRCh37	7	116339198	116339198	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	235	449	0	ENST00000397752.3:c.60G>C	p.Gln20His	p.Q20H	ENST00000397752	NM_000245.2	20	caG/caC																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528720	8528720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	29	446	0	ENST00000356435.5:c.412G>C	p.Glu138Gln	p.E138Q	ENST00000356435		138	Gag/Cag																																																																															
SYK	6850	MSKCC	GRCh37	9	93636499	93636499	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	165	604	0	ENST00000375746.1:c.929A>T	p.Gln310Leu	p.Q310L	ENST00000375746	NM_001174167.1	310	cAa/cTa																																																																															
TET1	80312	MSKCC	GRCh37	10	70332811	70332811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	177	490	0	ENST00000373644.4:c.716C>T	p.Ser239Phe	p.S239F	ENST00000373644	NM_030625.2	239	tCc/tTc																																																																															
TET1	80312	MSKCC	GRCh37	10	70426919	70426919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	117	450	0	ENST00000373644.4:c.4579C>T	p.Leu1527Phe	p.L1527F	ENST00000373644	NM_030625.2	1527	Ctt/Ttt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435987	110435987	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	31	218	0	ENST00000375856.3:c.2414C>G	p.Ser805Cys	p.S805C	ENST00000375856	NM_003749.2	805	tCc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577112	7577112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	390	622	0	ENST00000269305.4:c.826G>T	p.Ala276Ser	p.A276S	ENST00000269305	NM_001126112.2	276	Gcc/Tcc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370320	40370320	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	110	1004	0	ENST00000293328.3:c.1018C>G	p.Gln340Glu	p.Q340E	ENST00000293328	NM_012448.3	340	Cag/Gag																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4094487	4094487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	218	396	0	ENST00000262948.5:c.1056G>T	p.Lys352Asn	p.K352N	ENST00000262948	NM_030662.3	352	aaG/aaT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549427	187549461	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGTGAACCACGGGGCGTGGTCATTCGTGTCGCT	GCGGTGAACCACGGGGCGTGGTCATTCGTGTCGCT	-			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	207	415	0	ENST00000441802.2:c.4657_4691del	p.Ser1553PhefsTer9	p.S1553Ffs*9	ENST00000441802	NM_005245.3	1553	AGCGACACGAATGACCACGCCCCGTGGTTCACCGCt/t																																																																															
TP53	7157	MSKCC	GRCh37	17	7577101	7577101	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	374	611	1	ENST00000269305.4:c.837del	p.Arg280GlufsTer65	p.R280Efs*65	ENST00000269305	NM_001126112.2	279	ggG/gg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295162	1295164	+	5_prime_UTR_variant	5'UTR	ONP	GAA	GAA	TAT			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	31	149	0				ENST00000310581	NM_198253.2																																																																																	
IRS2	8660	MSKCC	GRCh37	13	110435525	110435526	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	A			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	25	113	0	ENST00000375856.3:c.2875_2876delinsT	p.Gly959SerfsTer21	p.G959Sfs*21	ENST00000375856	NM_003749.2	959	GGc/Tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008780-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			154	22	485	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0008780-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			60	20	318	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579408	7579430	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGCCAGGAGGGGGCTGGTG	CAGGGGCCAGGAGGGGGCTGGTG	-			P-0008780-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			77	23	427	0	ENST00000269305.4:c.257_279delCACCAGCCCCCTCCTGGCCCCTG	p.Ala86ValfsTer55	p.A86Vfs*55	ENST00000269305	NM_001126112.2	86	gCACCAGCCCCCTCCTGGCCCCTG/g																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026531	48026531	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0008780-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			120	35	574	0	ENST00000234420.5:c.1409C>G	p.Ser470Ter	p.S470*	ENST00000234420	NM_000179.2	470	tCa/tGa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048728	180048728	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008780-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			54	16	472	1	ENST00000261937.6:c.1834A>T	p.Asn612Tyr	p.N612Y	ENST00000261937	NM_182925.4	612	Aac/Tac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342496	118342496	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008780-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			125	33	639	0	ENST00000534358.1:c.622G>C	p.Asp208His	p.D208H	ENST00000534358	NM_005933.3	208	Gat/Cat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911684	32911687	+	frameshift_variant	Frame_Shift_Del	DEL	AATT	AATT	-			P-0008780-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			170	31	936	1	ENST00000380152.3:c.3195_3198del	p.Asn1066LeufsTer10	p.N1066Lfs*10	ENST00000380152		1064	tcAATT/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	165	329	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	50	264	0				ENST00000310581	NM_198253.2																																																																																	
EPHA3	2042	MSKCC	GRCh37	3	89259265	89259265	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	71	355	0	ENST00000336596.2:c.409G>C	p.Glu137Gln	p.E137Q	ENST00000336596	NM_005233.5	137	Gag/Cag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541502	187541502	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	163	549	1	ENST00000441802.2:c.6238G>T	p.Val2080Leu	p.V2080L	ENST00000441802	NM_005245.3	2080	Gtg/Ttg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180055895	180055895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	403	464	0	ENST00000261937.6:c.1090C>T	p.Pro364Ser	p.P364S	ENST00000261937	NM_182925.4	364	Ccc/Tcc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522329	157522329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	137	416	1	ENST00000346085.5:c.4601G>A	p.Arg1534His	p.R1534H	ENST00000346085	NM_020732.3	1534	cGc/cAc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	404954	404954	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	82	361	0	ENST00000399788.2:c.4240A>G	p.Ser1414Gly	p.S1414G	ENST00000399788	NM_001042603.1	1414	Agc/Ggc																																																																															
AR	367	MSKCC	GRCh37	X	66765710	66765710	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	325	543	0	ENST00000374690.3:c.722A>G	p.Lys241Arg	p.K241R	ENST00000374690	NM_000044.3	241	aAg/aGg																																																																															
ATRX	546	MSKCC	GRCh37	X	76763896	76763896	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	191	511	0	ENST00000373344.5:c.7412C>G	p.Pro2471Arg	p.P2471R	ENST00000373344	NM_000489.3	2471	cCa/cGa																																																																															
BTK	695	MSKCC	GRCh37	X	100625036	100625036	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	218	538	0	ENST00000308731.7:c.341T>C	p.Phe114Ser	p.F114S	ENST00000308731	NM_000061.2	114	tTc/tCc																																																																															
BCL6	604	MSKCC	GRCh37	3	187447317	187447317	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	230	254	0	ENST00000232014.4:c.876delC	p.Tyr293ThrfsTer31	p.Y293Tfs*31	ENST00000232014	NM_001130845.1	292	ccC/cc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098964	178098966	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	160	296	0	ENST00000397062.3:c.79_81del	p.Asp27del	p.D27del	ENST00000397062	NM_006164.4	27	GAT/-																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786055	135786055	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	99	389	0	ENST00000298552.3:c.1166del	p.Gly389GlufsTer51	p.G389Efs*51	ENST00000298552	NM_001162426.1	389	gGa/ga																																																																															
STK11	6794	MSKCC	GRCh37	19	1220659	1220660	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	447	445	0	ENST00000326873.7:c.677_678del	p.Asn226ArgfsTer39	p.N226Rfs*39	ENST00000326873	NM_000455.4	226	aAC/a																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210741	2210741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1186	227	657	5	ENST00000398665.3:c.1238G>A	p.Arg413His	p.R413H	ENST00000398665	NM_032482.2	413	cGc/cAc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661658	227661658	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	73	389	2	ENST00000305123.5:c.1797C>A	p.His599Gln	p.H599Q	ENST00000305123	NM_005544.2	599	caC/caA																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911075	29911075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1445	106	657	1	ENST00000376809.5:c.374G>A	p.Cys125Tyr	p.C125Y	ENST00000376809	NM_002116.7	125	tGc/tAc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37671998	37671999	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATACACAAAGAT			P-0008928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1095	113	688	0	ENST00000447079.4:c.2784_2785insTACACAAAGATA	p.Glu928_Leu929insTyrThrLysIle	p.E928_L929insYTKI	ENST00000447079	NM_015083.1	928	gaa/gaATACACAAAGATa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0009297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	55	202	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	119	321	0	ENST00000269305.4:c.403delT	p.Cys135AlafsTer35	p.C135Afs*35	ENST00000269305	NM_001126112.2	135	Tgc/gc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468382	89468382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	72	231	1	ENST00000336596.2:c.1916G>A	p.Arg639His	p.R639H	ENST00000336596	NM_005233.5	639	cGc/cAc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243675729	243675729	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0009297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	86	231	0	ENST00000263826.5:c.1252-1G>A		p.X418_splice	ENST00000263826	NM_005465.4	418																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89391076	89391076	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	173	439	0	ENST00000336596.2:c.1142G>C	p.Arg381Pro	p.R381P	ENST00000336596	NM_005233.5	381	cGc/cCc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751576	57751576	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	78	281	0	ENST00000274289.3:c.1415C>A	p.Ala472Glu	p.A472E	ENST00000274289	NM_006622.3	472	gCa/gAa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464372	120464387	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGTGTTCACTTGTT	CCAGTGTTCACTTGTT	-			P-0009297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	58	352	2	ENST00000256646.2:c.5259_5274del	p.Thr1754SerfsTer11	p.T1754Sfs*11	ENST00000256646	NM_024408.3	1753	ggAACAAGTGAACACTGG/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	97	412	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	116	382	0	ENST00000171111.5:c.959G>T	p.Arg320Leu	p.R320L	ENST00000171111	NM_203500.1	320	cGg/cTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971180	21971180	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	41	126	0	ENST00000304494.5:c.178delG	p.Ala60ArgfsTer86	p.A60Rfs*86	ENST00000304494	NM_000077.4	60	Gcg/cg																																																																															
SDHB	6390	MSKCC	GRCh37	1	17354353	17354353	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	94	385	0	ENST00000375499.3:c.431G>T	p.Ser144Ile	p.S144I	ENST00000375499	NM_003000.2	144	aGc/aTc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001915	29001915	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	77	481	0	ENST00000282397.4:c.1250A>C	p.Asn417Thr	p.N417T	ENST00000282397	NM_002019.4	417	aAc/aCc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207009	1207009	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	89	304	0	ENST00000326873.7:c.97G>T	p.Glu33Ter	p.E33*	ENST00000326873	NM_000455.4	33	Gag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130288	11130309	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTTTGTCCCCCAGCTCCGGA	GCCTTTGTCCCCCAGCTCCGGA	-			P-0009379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	101	422	0	ENST00000344626.4:c.2528_2549del	p.Ala843ValfsTer8	p.A843Vfs*8	ENST00000344626	NM_003072.3	843	GCCTTTGTCCCCCAGCTCCGGAgt/gt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039434	47039443	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCGTGGTGA	ATCGTGGTGA	-			P-0009379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	111	194	0	ENST00000329236.7:c.826_828+7del		p.X276_splice	ENST00000329236	NM_001204466.1	276																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	42	210	1				ENST00000310581	NM_198253.2																																																																																	
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0009418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	46	277	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0009418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	349	409	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	86	344	0	ENST00000257430.4:c.4473dupT	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480469	89480469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	83	411	1	ENST00000336596.2:c.2306G>A	p.Arg769His	p.R769H	ENST00000336596	NM_005233.5	769	cGt/cAt																																																																															
ALK	238	MSKCC	GRCh37	2	29462683	29462683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	86	375	0	ENST00000389048.3:c.2218G>A	p.Gly740Arg	p.G740R	ENST00000389048	NM_004304.4	740	Gga/Aga																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562787	21562787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	73	167	3	ENST00000382592.4:c.1132C>T	p.Arg378Trp	p.R378W	ENST00000382592	NM_014572.2	378	Cgg/Tgg																																																																															
CIC	23152	MSKCC	GRCh37	19	42792096	42792096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	41	251	0	ENST00000575354.2:c.900G>A	p.Met300Ile	p.M300I	ENST00000575354	NM_015125.3	300	atG/atA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs387906846		P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	345	308	0	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96920640	96920640	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1303	246	392	0	ENST00000258439.3:c.340G>C	p.Asp114His	p.D114H	ENST00000258439	NM_001193304.2	114	Gat/Cat																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99156116	99156116	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	153	260	0	ENST00000074304.5:c.796C>G	p.Leu266Val	p.L266V	ENST00000074304	NM_001134224.1	266	Cta/Gta																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157488319	157488319	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	244	163	0	ENST00000346085.5:c.3025G>T	p.Ala1009Ser	p.A1009S	ENST00000346085	NM_020732.3	1009	Gca/Tca																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729633	41729633	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1261	887	611	1	ENST00000242208.4:c.896A>T	p.Gln299Leu	p.Q299L	ENST00000242208	NM_002192.2	299	cAg/cTg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5029838	5029838	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	108	443	0	ENST00000381652.3:c.282C>G	p.Ile94Met	p.I94M	ENST00000381652	NM_004972.3	94	atC/atG																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	266	169	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772709	135772709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	629	504	0	ENST00000298552.3:c.2837G>A	p.Ser946Asn	p.S946N	ENST00000298552	NM_001162426.1	946	aGc/aAc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998747	100998747	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	670	532	1	ENST00000325455.5:c.1055C>A	p.Pro352Gln	p.P352Q	ENST00000325455	NM_001202474.3	352	cCg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416417	49416417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	206	357	0	ENST00000301067.7:c.16294C>T	p.Arg5432Trp	p.R5432W	ENST00000301067	NM_003482.3	5432	Cgg/Tgg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001417	29001417	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	80	256	0	ENST00000282397.4:c.1315C>A	p.Pro439Thr	p.P439T	ENST00000282397	NM_002019.4	439	Cca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1303	654	506	1	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1188	627	502	0	ENST00000269305.4:c.800G>C	p.Arg267Pro	p.R267P	ENST00000269305	NM_001126112.2	267	cGg/cCg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032487	12032487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	239	265	0	ENST00000353533.5:c.923C>T	p.Pro308Leu	p.P308L	ENST00000353533	NM_003010.3	308	cCa/cTa																																																																															
YES1	7525	MSKCC	GRCh37	18	743332	743332	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1200	536	442	0	ENST00000314574.4:c.808T>A	p.Trp270Arg	p.W270R	ENST00000314574	NM_005433.3	270	Tgg/Agg																																																																															
BTK	695	MSKCC	GRCh37	X	100611065	100611065	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	150	276	1	ENST00000308731.7:c.1541C>A	p.Ser514Ter	p.S514*	ENST00000308731	NM_000061.2	514	tCa/tAa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123181269	123181269	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	396	267	0	ENST00000218089.9:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000218089	NM_001042749.1	245	Caa/Taa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971207	21971207	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	245	139	0	ENST00000304494.5:c.151delG	p.Val51SerfsTer2	p.V51Sfs*2	ENST00000304494	NM_000077.4	51	Gtc/tc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662629	117662649	+	inframe_deletion	In_Frame_Del	DEL	TTCACTTTGTCTTAGAGGAGT	TTCACTTTGTCTTAGAGGAGT	-			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	63	425	0	ENST00000368508.3:c.4816_4836del	p.Thr1606_Glu1612del	p.T1606_E1612del	ENST00000368508	NM_002944.2	1606	ACTCCTCTAAGACAAAGTGAA/-																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458724	120458724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009473-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	63	312	0	ENST00000256646.2:c.6621G>A	p.Met2207Ile	p.M2207I	ENST00000256646	NM_024408.3	2207	atG/atA																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186503787	186503787	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs142804104		P-0009473-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	163	634	0	ENST00000323963.5:c.464T>C	p.Ile155Thr	p.I155T	ENST00000323963		155	aTt/aCt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295179	1295179	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0009473-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	19	167	0				ENST00000310581	NM_198253.2																																																																																	
CDKN2A	1029	MSKCC	GRCh37	9	21974703	21974703	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009473-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	149	424	0	ENST00000304494.5:c.124A>C	p.Asn42His	p.N42H	ENST00000304494	NM_000077.4	42	Aat/Cat																																																																															
PGR	5241	MSKCC	GRCh37	11	100922294	100922294	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009473-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	98	464	1	ENST00000325455.5:c.2218C>T	p.Arg740Ter	p.R740*	ENST00000325455	NM_001202474.3	740	Cga/Tga																																																																															
PGR	5241	MSKCC	GRCh37	11	100999795	100999795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009473-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	70	579	0	ENST00000325455.5:c.7G>A	p.Glu3Lys	p.E3K	ENST00000325455	NM_001202474.3	3	Gag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108202285	108202285	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0009473-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	68	284	1	ENST00000278616.4:c.7629+1G>A		p.X2543_splice	ENST00000278616	NM_000051.3	2543																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009473-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	394	378	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0009473-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	181	512	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	470	266	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579475	7579475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	128	218	0	ENST00000269305.4:c.212C>T	p.Pro71Leu	p.P71L	ENST00000269305	NM_001126112.2	71	cCc/cTc																																																																															
ALK	238	MSKCC	GRCh37	2	29474022	29474022	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	166	311	0	ENST00000389048.3:c.2153G>C	p.Gly718Ala	p.G718A	ENST00000389048	NM_004304.4	718	gGc/gCc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120831	115120831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	144	209	1	ENST00000257566.3:c.175G>A	p.Ala59Thr	p.A59T	ENST00000257566	NM_016569.3	59	Gcc/Acc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030574	47030574	+	intron_variant	Intron	SNP	G	G	A			P-0009476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	94	263	0	ENST00000329236.7:c.201+1677G>A		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
GATA1	2623	MSKCC	GRCh37	X	48652238	48652239	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	136	420	0	ENST00000376670.3:c.909_910insT	p.Thr304TyrfsTer40	p.T304Yfs*40	ENST00000376670	NM_002049.3	303	-/T																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230388	46230388	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	205	298	0	ENST00000334344.6:c.723del	p.Asp242MetfsTer50	p.D242Mfs*50	ENST00000334344	NM_152641.2	241	gTt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579469	7579470	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0009476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	100	219	0	ENST00000269305.4:c.216_217dup	p.Val73AlafsTer51	p.V73Afs*51	ENST00000269305	NM_001126112.2	73	gtg/gCGtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	224	337	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	303	264	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593525	48593525	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	180	274	0	ENST00000342988.3:c.1276G>T	p.Val426Phe	p.V426F	ENST00000342988	NM_005359.5	426	Gtt/Ttt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912582	32912583	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1263	659	653	0	ENST00000380152.3:c.4091dup	p.Cys1365MetfsTer3	p.C1365Mfs*3	ENST00000380152		1364	ata/aTta																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685257	89685269	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	GTTTTGTTTTAAG	GTTTTGTTTTAAG	-			P-0009647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	155	185	0	ENST00000371953.3:c.165-8_169delGTTTTAAGGTTTT		p.X55_splice	ENST00000371953	NM_000314.4	55																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	534	319	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	94	212	0				ENST00000310581	NM_198253.2																																																																																	
EPHA5	2044	MSKCC	GRCh37	4	66356152	66356152	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	72	350	0	ENST00000273854.3:c.1345G>C	p.Asp449His	p.D449H	ENST00000273854	NM_004439.5	449	Gac/Cac																																																																															
KDM5A	5927	MSKCC	GRCh37	12	406210	406210	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	51	367	0	ENST00000399788.2:c.4231C>T	p.Gln1411Ter	p.Q1411*	ENST00000399788	NM_001042603.1	1411	Caa/Taa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346339	73346339	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	90	378	0	ENST00000377767.4:c.1461C>G	p.Asp487Glu	p.D487E	ENST00000377767	NM_014953.3	487	gaC/gaG																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39570469	39570469	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	63	462	1	ENST00000262039.4:c.665G>T	p.Arg222Leu	p.R222L	ENST00000262039	NM_002647.2	222	cGa/cTa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933893	39933893	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	110	563	0	ENST00000378444.4:c.706C>A	p.Pro236Thr	p.P236T	ENST00000378444	NM_001123385.1	236	Cca/Aca																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006816	47006816	+	5_prime_UTR_variant	5'UTR	DEL	G	G	-			P-0009737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	213	433	0	ENST00000329236.7:c.-63delG		p.*21*	ENST00000329236	NM_001204466.1																																																																																	
DNMT3B	1789	MSKCC	GRCh37	20	31379479	31379479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145632647		P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	53	525	0	ENST00000328111.2:c.886G>A	p.Val296Ile	p.V296I	ENST00000328111	NM_006892.3	296	Gtc/Atc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	55	486	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	36	408	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101267	27101268	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	47	478	1	ENST00000324856.7:c.4555dup	p.Gln1519ProfsTer13	p.Q1519Pfs*13	ENST00000324856	NM_006015.4	1517	gcc/gCcc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	24	67	1				ENST00000310581	NM_198253.2																																																																																	
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	58	257	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913500		P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	42	397	1	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088787	27088788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	42	374	0	ENST00000324856.7:c.2402dupG	p.Gln802SerfsTer15	p.Q802Sfs*15	ENST00000324856	NM_006015.4	799	cag/caGg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78935196	78935196	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	63	412	0	ENST00000306801.3:c.3608G>A	p.Arg1203His	p.R1203H	ENST00000306801	NM_020761.2	1203	cGc/cAc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125499299	125499299	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	29	424	2	ENST00000428830.2:c.368G>T	p.Gly123Val	p.G123V	ENST00000428830	NM_001114121.2	123	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	108	117	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	43	365	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680656	88680656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	35	481	0	ENST00000360948.2:c.601C>T	p.Arg201Cys	p.R201C	ENST00000360948	NM_001012338.2	201	Cgc/Tgc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225603	2225603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	83	354	2	ENST00000326181.6:c.1606G>A	p.Gly536Ser	p.G536S	ENST00000326181	NM_032271.2	536	Ggc/Agc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37864656	37864656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	51	574	0	ENST00000269571.5:c.308G>A	p.Arg103Gln	p.R103Q	ENST00000269571		103	cGa/cAa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862749	9862749	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150316865		P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	17	454	0	ENST00000330684.3:c.2554G>A	p.Val852Met	p.V852M	ENST00000330684	NM_001134407.1	852	Gtg/Atg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	19	226	2	ENST00000447079.4:c.4382delG	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771831816		P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	54	290	0	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780062	9780062	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	77	415	0	ENST00000377346.4:c.1326G>A	p.Trp442Ter	p.W442*	ENST00000377346	NM_005026.3	442	tgG/tgA																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120459254	120459254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	44	263	0	ENST00000256646.2:c.6091G>T	p.Asp2031Tyr	p.D2031Y	ENST00000256646	NM_024408.3	2031	Gac/Tac																																																																															
ALK	238	MSKCC	GRCh37	2	29446220	29446220	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	30	485	1	ENST00000389048.3:c.3347T>C	p.Ile1116Thr	p.I1116T	ENST00000389048	NM_004304.4	1116	aTc/aCc																																																																															
REL	5966	MSKCC	GRCh37	2	61149221	61149221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	14	333	0	ENST00000295025.8:c.1411G>A	p.Gly471Arg	p.G471R	ENST00000295025	NM_002908.2	471	Gga/Aga																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663429	227663429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	39	122	0	ENST00000305123.5:c.26G>A	p.Gly9Asp	p.G9D	ENST00000305123	NM_005544.2	9	gGc/gAc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185184670	185184670	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188669013		P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	29	634	1	ENST00000265026.3:c.1562G>A	p.Arg521His	p.R521H	ENST00000265026	NM_004721.4	521	cGt/cAt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435832	149435832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	42	492	0	ENST00000286301.3:c.2392G>A	p.Gly798Arg	p.G798R	ENST00000286301	NM_005211.3	798	Ggg/Agg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910553	29910553	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	16	118	0	ENST00000376809.5:c.93T>A	p.Tyr31Ter	p.Y31*	ENST00000376809	NM_002116.7	31	taT/taA																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730074	41730074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			74	24	958	1	ENST00000242208.4:c.455G>A	p.Arg152His	p.R152H	ENST00000242208	NM_002192.2	152	cGt/cAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836804	151836804	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	28	532	0	ENST00000262189.6:c.14416C>T	p.Arg4806Ter	p.R4806*	ENST00000262189	NM_170606.2	4806	Cga/Tga																																																																															
RET	5979	MSKCC	GRCh37	10	43600600	43600600	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139213499		P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	94	455	2	ENST00000355710.3:c.826G>A	p.Val276Ile	p.V276I	ENST00000355710	NM_020975.4	276	Gtc/Atc																																																																															
ATM	472	MSKCC	GRCh37	11	108129731	108129731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	18	471	0	ENST00000278616.4:c.2395G>A	p.Ala799Thr	p.A799T	ENST00000278616	NM_000051.3	799	Gca/Aca																																																																															
CBL	867	MSKCC	GRCh37	11	119145624	119145624	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	40	487	0	ENST00000264033.4:c.830T>C	p.Val277Ala	p.V277A	ENST00000264033	NM_005188.3	277	gTg/gCg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	443551	443551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	21	411	1	ENST00000399788.2:c.1346C>A	p.Pro449His	p.P449H	ENST00000399788	NM_001042603.1	449	cCt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445808	49445808	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	72	715	1	ENST00000301067.7:c.1658C>A	p.Pro553His	p.P553H	ENST00000301067	NM_003482.3	553	cCt/cAt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549019	21549019	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	41	209	0	ENST00000382592.4:c.3257T>C	p.Val1086Ala	p.V1086A	ENST00000382592	NM_014572.2	1086	gTg/gCg																																																																															
RB1	5925	MSKCC	GRCh37	13	49030384	49030384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	49	332	0	ENST00000267163.4:c.1859C>T	p.Thr620Met	p.T620M	ENST00000267163	NM_000321.2	620	aCg/aTg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987207	36987207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	40	157	0	ENST00000354822.5:c.482C>T	p.Pro161Leu	p.P161L	ENST00000354822	NM_001079668.2	161	cCg/cTg																																																																															
MGA	23269	MSKCC	GRCh37	15	41988445	41988445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	26	847	1	ENST00000219905.7:c.1237G>A	p.Val413Ile	p.V413I	ENST00000219905	NM_001164273.1	413	Gta/Ata																																																																															
BLM	641	MSKCC	GRCh37	15	91347568	91347568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	22	435	0	ENST00000355112.3:c.3730G>A	p.Val1244Ile	p.V1244I	ENST00000355112	NM_000057.2	1244	Gtc/Atc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348061	348061	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	76	306	0	ENST00000262320.3:c.1445C>A	p.Pro482His	p.P482H	ENST00000262320	NM_003502.3	482	cCt/cAt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2133798	2133798	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45517323		P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	62	337	0	ENST00000219476.3:c.3986G>A	p.Arg1329His	p.R1329H	ENST00000219476	NM_000548.3	1329	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984685	72984685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	62	735	1	ENST00000268489.5:c.2899G>A	p.Val967Met	p.V967M	ENST00000268489	NM_006885.3	967	Gtg/Atg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534326	63534326	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	91	484	0	ENST00000307078.5:c.1195C>T	p.Arg399Ter	p.R399*	ENST00000307078	NM_004655.3	399	Cga/Tga																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222056	2222056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	84	502	0	ENST00000398665.3:c.2888C>T	p.Ala963Val	p.A963V	ENST00000398665	NM_032482.2	963	gCc/gTc																																																																															
INSR	3643	MSKCC	GRCh37	19	7120688	7120688	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28933086		P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	12	634	3	ENST00000302850.5:c.3602G>A	p.Arg1201Gln	p.R1201Q	ENST00000302850	NM_000208.2	1201	cGg/cAg																																																																															
INSR	3643	MSKCC	GRCh37	19	7163043	7163043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	25	431	0	ENST00000302850.5:c.2029G>A	p.Gly677Arg	p.G677R	ENST00000302850	NM_000208.2	677	Ggg/Agg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291588	15291588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	82	534	1	ENST00000263388.2:c.3046G>A	p.Val1016Ile	p.V1016I	ENST00000263388	NM_000435.2	1016	Gtc/Atc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912399	50912399	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	91	652	0	ENST00000440232.2:c.1913T>C	p.Ile638Thr	p.I638T	ENST00000440232	NM_002691.3	638	aTc/aCc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024474	31024474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	43	433	1	ENST00000375687.4:c.3959C>T	p.Ala1320Val	p.A1320V	ENST00000375687	NM_015338.5	1320	gCg/gTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877385	40877385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			43	13	337	1	ENST00000373198.4:c.2311G>A	p.Ala771Thr	p.A771T	ENST00000373198	NM_133170.3	771	Gct/Act																																																																															
EP300	2033	MSKCC	GRCh37	22	41573156	41573156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	62	318	0	ENST00000263253.7:c.5441G>A	p.Arg1814Gln	p.R1814Q	ENST00000263253	NM_001429.3	1814	cGg/cAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028820	47028820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	84	299	3	ENST00000329236.7:c.124C>T	p.Arg42Cys	p.R42C	ENST00000329236	NM_001204466.1	42	Cgt/Tgt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410553	63410553	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			66	61	372	0	ENST00000330258.3:c.2614T>C	p.Tyr872His	p.Y872H	ENST00000330258	NM_152424.3	872	Tac/Cac																																																																															
JAK3	3718	MSKCC	GRCh37	19	17941419	17941420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	25	291	0	ENST00000458235.1:c.2988dup	p.Glu997ArgfsTer45	p.E997Rfs*45	ENST00000458235	NM_000215.3	996	-/C																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165283	47165283	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	23	482	2	ENST00000409792.3:c.843delA	p.Glu282LysfsTer19	p.E282Kfs*19	ENST00000409792	NM_014159.6	281	aaA/aa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913558	32913559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1265028174		P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	39	823	0	ENST00000380152.3:c.5073dup	p.Trp1692MetfsTer3	p.W1692Mfs*3	ENST00000380152		1689	gca/gcAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878069	151878070	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			35	13	338	0	ENST00000262189.6:c.6875dup	p.Ser2293IlefsTer5	p.S2293Ifs*5	ENST00000262189	NM_170606.2	2292	cca/ccCa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932110	39932111	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	42	258	0	ENST00000378444.4:c.2488_2489del	p.Ser830CysfsTer6	p.S830Cfs*6	ENST00000378444	NM_001123385.1	830	AGt/t																																																																															
RB1	5925	MSKCC	GRCh37	13	48954210	48954210	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	139	366	0	ENST00000267163.4:c.1411C>T	p.Gln471Ter	p.Q471*	ENST00000267163	NM_000321.2	471	Caa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	97	190	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38991102	38991102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	198	388	0	ENST00000357387.3:c.532C>T	p.Gln178Ter	p.Q178*	ENST00000357387	NM_152756.3	178	Caa/Taa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021828	71021828	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	40	300	0	ENST00000318789.4:c.1531-1G>A		p.X511_splice	ENST00000318789	NM_032682.5	511																																																																																
ASXL2	55252	MSKCC	GRCh37	2	25966275	25966275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	223	395	1	ENST00000435504.4:c.2931G>A	p.Met977Ile	p.M977I	ENST00000435504		977	atG/atA																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795073	242795073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	201	491	0	ENST00000334409.5:c.136G>A	p.Glu46Lys	p.E46K	ENST00000334409	NM_005018.2	46	Gaa/Aaa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808865	1808865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1074	314	584	0	ENST00000260795.2:c.2297C>T	p.Pro766Leu	p.P766L	ENST00000260795		766	cCt/cTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510225	187510225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	59	426	0	ENST00000441802.2:c.13288G>A	p.Asp4430Asn	p.D4430N	ENST00000441802	NM_005245.3	4430	Gac/Aac																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056443	26056443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	85	154	0	ENST00000343677.2:c.214G>A	p.Asp72Asn	p.D72N	ENST00000343677	NM_005319.3	72	Gat/Aat																																																																															
FYN	2534	MSKCC	GRCh37	6	112024200	112024200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1155	356	633	0	ENST00000368678.4:c.585G>A	p.Met195Ile	p.M195I	ENST00000368678		195	atG/atA																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137525611	137525611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	170	409	0	ENST00000367739.4:c.404G>A	p.Arg135Lys	p.R135K	ENST00000367739	NM_000416.2	135	aGa/aAa																																																																															
HGF	3082	MSKCC	GRCh37	7	81388032	81388032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	258	476	0	ENST00000222390.5:c.343G>A	p.Glu115Lys	p.E115K	ENST00000222390	NM_000601.4	115	Gaa/Aaa																																																																															
SMO	6608	MSKCC	GRCh37	7	128852057	128852057	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	234	409	0	ENST00000249373.3:c.2129A>T	p.Gln710Leu	p.Q710L	ENST00000249373	NM_005631.4	710	cAg/cTg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135796814	135796814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	229	427	0	ENST00000298552.3:c.673G>A	p.Glu225Lys	p.E225K	ENST00000298552	NM_001162426.1	225	Gag/Aag																																																																															
TET1	80312	MSKCC	GRCh37	10	70432753	70432753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	284	475	0	ENST00000373644.4:c.4775G>A	p.Arg1592Lys	p.R1592K	ENST00000373644	NM_030625.2	1592	aGa/aAa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15938102	15938102	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	225	428	0	ENST00000268712.3:c.7112G>A	p.Trp2371Ter	p.W2371*	ENST00000268712	NM_006311.3	2371	tGg/tAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968195	15968195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	292	458	5	ENST00000268712.3:c.5090C>A	p.Ser1697Tyr	p.S1697Y	ENST00000268712	NM_006311.3	1697	tCc/tAc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004687	16004687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	333	583	1	ENST00000268712.3:c.2567G>A	p.Arg856Lys	p.R856K	ENST00000268712	NM_006311.3	856	aGa/aAa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16012190	16012190	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	188	425	0	ENST00000268712.3:c.2092C>T	p.Gln698Ter	p.Q698*	ENST00000268712	NM_006311.3	698	Caa/Taa																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29120995	29120995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	303	490	0	ENST00000328354.6:c.562G>A	p.Glu188Lys	p.E188K	ENST00000328354	NM_007194.3	188	Gaa/Aaa																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130673	29130673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	129	277	0	ENST00000328354.6:c.37C>A	p.His13Asn	p.H13N	ENST00000328354	NM_007194.3	13	Cat/Aat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039859	47039859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	216	426	0	ENST00000329236.7:c.968C>T	p.Ser323Phe	p.S323F	ENST00000329236	NM_001204466.1	323	tCt/tTt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123229252	123229252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	319	514	1	ENST00000218089.9:c.3736G>A	p.Glu1246Lys	p.E1246K	ENST00000218089	NM_001042749.1	1246	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	197	408	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0009878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	305	654	1	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																															
CDH1	999	MSKCC	GRCh37	16	68771360	68771360	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	177	206	0	ENST00000261769.5:c.42del	p.Leu15CysfsTer41	p.L15Cfs*41	ENST00000261769	NM_004360.3	14	ctG/ct																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115809	8115809	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1478	454	719	0	ENST00000346208.3:c.1158del	p.Lys387ArgfsTer17	p.K387Rfs*17	ENST00000346208		385	ttC/tt																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	DEL	GT	GT	-			P-0009878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	106	198	2	ENST00000412916.2:c.165+1_165+2del		p.X55_splice	ENST00000412916		55																																																																																
ESR1	2099	MSKCC	GRCh37	6	152419923	152419924	+	missense_variant	Missense_Mutation	DNP	AT	AT	CA			P-0009878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	205	347	0	ENST00000206249.3:c.1610_1611delinsCA	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAT/tCA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	345	356	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252994	36252995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	172	239	0	ENST00000300305.3:c.367dupG	p.Asp123GlyfsTer15	p.D123Gfs*15	ENST00000300305		123	gat/gGat																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206649565	206649565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	46	268	1	ENST00000367120.3:c.400C>T	p.Arg134Cys	p.R134C	ENST00000367120	NM_014002.3	134	Cgc/Tgc																																																																															
IL10	3586	MSKCC	GRCh37	1	206943231	206943231	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	302	352	0	ENST00000423557.1:c.387T>G	p.Phe129Leu	p.F129L	ENST00000423557	NM_000572.2	129	ttT/ttG																																																																															
ATR	545	MSKCC	GRCh37	3	142275369	142275369	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	250	309	0	ENST00000350721.4:c.1934G>C	p.Arg645Thr	p.R645T	ENST00000350721	NM_001184.3	645	aGa/aCa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983804	15983804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	355	398	0	ENST00000268712.3:c.3318G>T	p.Lys1106Asn	p.K1106N	ENST00000268712	NM_006311.3	1106	aaG/aaT																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59853857	59853857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	358	613	0	ENST00000259008.2:c.2002G>A	p.Glu668Lys	p.E668K	ENST00000259008	NM_032043.2	668	Gaa/Aaa																																																																															
EP300	2033	MSKCC	GRCh37	22	41531841	41531841	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	461	539	0	ENST00000263253.7:c.1553G>C	p.Gly518Ala	p.G518A	ENST00000263253	NM_001429.3	518	gGa/gCa																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317539	1317539	+	downstream_gene_variant	3'Flank	SNP	C	C	G			P-0009941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	409	564	0				ENST00000381566																																																																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	321	506	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	313	412	0				ENST00000310581	NM_198253.2																																																																																	
RET	5979	MSKCC	GRCh37	10	43620407	43620407	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	69	442	0	ENST00000355710.3:c.3016G>T	p.Glu1006Ter	p.E1006*	ENST00000355710	NM_020975.4	1006	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs879253911		P-0010061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	110	313	1	ENST00000269305.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000269305	NM_001126112.2	180	Gag/Aag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127412	55127412	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1237	189	577	1	ENST00000257290.5:c.200C>A	p.Ser67Tyr	p.S67Y	ENST00000257290	NM_006206.4	67	tCc/tAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55154983	55154983	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1332	242	581	4	ENST00000257290.5:c.2692G>T	p.Gly898Cys	p.G898C	ENST00000257290	NM_006206.4	898	Ggc/Tgc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280049	66280049	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	117	514	0	ENST00000273854.3:c.1640G>C	p.Gly547Ala	p.G547A	ENST00000273854	NM_004439.5	547	gGc/gCc																																																																															
E2F3	1871	MSKCC	GRCh37	6	20488477	20488477	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0010061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1196	182	553	0	ENST00000346618.3:c.1133A>T	p.Lys378Ile	p.K378I	ENST00000346618	NM_001949.4	378	aAa/aTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151871304	151871304	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	241	441	0	ENST00000262189.6:c.9286A>G	p.Ile3096Val	p.I3096V	ENST00000262189	NM_170606.2	3096	Ata/Gta																																																																															
TET1	80312	MSKCC	GRCh37	10	70332297	70332297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1520	106	786	3	ENST00000373644.4:c.202G>A	p.Val68Met	p.V68M	ENST00000373644	NM_030625.2	68	Gtg/Atg																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514155	69514155	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs149279540		P-0010061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1229	144	559	0	ENST00000294312.3:c.526C>A	p.Pro176Thr	p.P176T	ENST00000294312	NM_005117.2	176	Cct/Act																																																																															
FLT3	2322	MSKCC	GRCh37	13	28578234	28578234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1179	76	519	0	ENST00000241453.7:c.2937G>T	p.Met979Ile	p.M979I	ENST00000241453	NM_004119.2	979	atG/atT																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291041	10291041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	59	370	0	ENST00000340748.4:c.430G>A	p.Asp144Asn	p.D144N	ENST00000340748		144	Gat/Aat																																																																															
CIC	23152	MSKCC	GRCh37	19	42795743	42795743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1272	377	604	1	ENST00000575354.2:c.2732C>T	p.Pro911Leu	p.P911L	ENST00000575354	NM_015125.3	911	cCg/cTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42795818	42795818	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1398	161	584	1	ENST00000575354.2:c.2807G>T	p.Gly936Val	p.G936V	ENST00000575354	NM_015125.3	936	gGa/gTa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922208	39922208	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1410	97	667	1	ENST00000378444.4:c.3964C>A	p.Gln1322Lys	p.Q1322K	ENST00000378444	NM_001123385.1	1322	Cag/Aag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44928873	44928873	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1371	99	559	0	ENST00000377967.4:c.1973G>T	p.Arg658Leu	p.R658L	ENST00000377967	NM_021140.2	658	cGa/cTa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47004891	47004891	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	T			P-0010061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1124	176	594	0	ENST00000329236.7:c.-126+7G>T		p.X42_splice	ENST00000329236	NM_001204466.1	42																																																																																
RBM10	8241	MSKCC	GRCh37	X	47044853	47044853	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	142	409	1	ENST00000329236.7:c.1945G>T	p.Gly649Ter	p.G649*	ENST00000329236	NM_001204466.1	649	Gga/Tga																																																																															
ARAF	369	MSKCC	GRCh37	X	47429367	47429367	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1626	119	745	0	ENST00000377045.4:c.1495C>A	p.Leu499Ile	p.L499I	ENST00000377045	NM_001654.4	499	Ctc/Atc																																																																															
BTK	695	MSKCC	GRCh37	X	100626628	100626628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1313	170	738	1	ENST00000308731.7:c.302C>A	p.Pro101His	p.P101H	ENST00000308731	NM_000061.2	101	cCc/cAc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469580	25469580	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1360	222	642	0	ENST00000264709.3:c.1188del	p.Lys397ArgfsTer10	p.K397Rfs*10	ENST00000264709	NM_175629.2	396	gcC/gc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923360	9923361	+	missense_variant	Missense_Mutation	DNP	CC	CC	GT			P-0010061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1114	153	591	0	ENST00000330684.3:c.1926_1927delinsAC	p.Ala643Pro	p.A643P	ENST00000330684	NM_001134407.1	642	ctGGct/ctACct																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545585	106545585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	122	287	0	ENST00000359195.3:c.3062G>A	p.Arg1021His	p.R1021H	ENST00000359195	NM_002649.2	1021	cGt/cAt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	152	374	2	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	97	244	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	170	496	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112177049	112177049	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	131	418	0	ENST00000257430.4:c.5758C>T	p.Arg1920Ter	p.R1920*	ENST00000257430	NM_000038.5	1920	Cga/Tga																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748309	41748309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	101	319	0	ENST00000226382.2:c.460C>T	p.Arg154Cys	p.R154C	ENST00000226382	NM_003924.3	154	Cgc/Tgc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295253	1295253	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	84	336	0				ENST00000310581	NM_198253.2																																																																																	
MSH6	2956	MSKCC	GRCh37	2	48027541	48027541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	115	246	0	ENST00000234420.5:c.2419G>A	p.Glu807Lys	p.E807K	ENST00000234420	NM_000179.2	807	Gaa/Aaa																																																																															
ATR	545	MSKCC	GRCh37	3	142281802	142281802	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	155	346	0	ENST00000350721.4:c.442G>T	p.Glu148Ter	p.E148*	ENST00000350721	NM_001184.3	148	Gaa/Taa																																																																															
E2F3	1871	MSKCC	GRCh37	6	20483060	20483060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	117	300	0	ENST00000346618.3:c.793G>A	p.Glu265Lys	p.E265K	ENST00000346618	NM_001949.4	265	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs879255270		P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	106	282	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515141	103515141	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770246574		P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	125	284	0	ENST00000355739.4:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000355739	NM_000123.3	548	Gaa/Aaa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99442819	99442819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	121	442	0	ENST00000268035.6:c.1216C>T	p.Arg406Cys	p.R406C	ENST00000268035	NM_000875.3	406	Cgc/Tgc																																																																															
ATR	545	MSKCC	GRCh37	3	142281952	142281952	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	58	128	0	ENST00000350721.4:c.293-1G>T		p.X98_splice	ENST00000350721	NM_001184.3	98																																																																																
REL	5966	MSKCC	GRCh37	2	61149129	61149129	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144119768		P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	84	406	0	ENST00000295025.8:c.1319C>T	p.Ser440Leu	p.S440L	ENST00000295025	NM_002908.2	440	tCg/tTg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772842	135772842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1113	195	513	0	ENST00000298552.3:c.2781G>T	p.Lys927Asn	p.K927N	ENST00000298552	NM_001162426.1	927	aaG/aaT																																																																															
ATR	545	MSKCC	GRCh37	3	142178199	142178199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	95	319	0	ENST00000350721.4:c.7219C>T	p.Arg2407Cys	p.R2407C	ENST00000350721	NM_001184.3	2407	Cgc/Tgc																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945093	31945093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	154	503	0	ENST00000340398.3:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000340398	NM_001013699.2	3	cGa/cAa																																																																															
YES1	7525	MSKCC	GRCh37	18	751726	751726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	109	340	0	ENST00000314574.4:c.350G>T	p.Arg117Ile	p.R117I	ENST00000314574	NM_005433.3	117	aGa/aTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517847	187517847	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202133523		P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	171	459	1	ENST00000441802.2:c.12847G>A	p.Glu4283Lys	p.E4283K	ENST00000441802	NM_005245.3	4283	Gaa/Aaa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28893668	28893668	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	71	207	0	ENST00000282397.4:c.3178C>T	p.Arg1060Ter	p.R1060*	ENST00000282397	NM_002019.4	1060	Cga/Tga																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417901	138417901	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	122	287	0	ENST00000289153.2:c.1618G>T	p.Glu540Ter	p.E540*	ENST00000289153	NM_006219.2	540	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380289	25380289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	124	297	0	ENST00000256078.4:c.169G>A	p.Asp57Asn	p.D57N	ENST00000256078	NM_033360.2	57	Gac/Aac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	107	348	0	ENST00000263967.3:c.3132T>G	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaG																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950648	38950648	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776074870		P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1188	178	553	3	ENST00000357387.3:c.3302C>T	p.Ser1101Leu	p.S1101L	ENST00000357387	NM_152756.3	1101	tCg/tTg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231773	36231773	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	200	465	1	ENST00000300305.3:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000300305		204	cGa/cAa																																																																															
ATM	472	MSKCC	GRCh37	11	108198396	108198396	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	106	298	0	ENST00000278616.4:c.7000T>G	p.Tyr2334Asp	p.Y2334D	ENST00000278616	NM_000051.3	2334	Tac/Gac																																																																															
MPL	4352	MSKCC	GRCh37	1	43812205	43812205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	159	436	1	ENST00000372470.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000372470	NM_005373.2	357	cGa/cAa																																																																															
MPL	4352	MSKCC	GRCh37	1	43812585	43812585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	127	323	1	ENST00000372470.3:c.1288G>A	p.Glu430Lys	p.E430K	ENST00000372470	NM_005373.2	430	Gaa/Aaa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120459064	120459064	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	80	373	0	ENST00000256646.2:c.6281T>G	p.Leu2094Arg	p.L2094R	ENST00000256646	NM_024408.3	2094	cTg/cGg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843506	156843506	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1434897221		P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	43	365	0	ENST00000524377.1:c.932C>T	p.Pro311Leu	p.P311L	ENST00000524377	NM_002529.3	311	cCg/cTg																																																																															
IL10	3586	MSKCC	GRCh37	1	206945644	206945644	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	153	448	0	ENST00000423557.1:c.137A>G	p.Asp46Gly	p.D46G	ENST00000423557	NM_000572.2	46	gAt/gGt																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226253490	226253490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	223	404	0	ENST00000366813.1:c.262G>A	p.Ala88Thr	p.A88T	ENST00000366813		88	Gca/Aca																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967281	25967281	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	71	470	0	ENST00000435504.4:c.1925T>G	p.Phe642Cys	p.F642C	ENST00000435504		642	tTt/tGt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967318	25967318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	152	456	1	ENST00000435504.4:c.1888C>T	p.Pro630Ser	p.P630S	ENST00000435504		630	Ccg/Tcg																																																																															
ACVR1	90	MSKCC	GRCh37	2	158630671	158630671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1363	91	570	0	ENST00000263640.3:c.572G>A	p.Gly191Glu	p.G191E	ENST00000263640	NM_001105.4	191	gGa/gAa																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719551	190719551	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	113	312	0	ENST00000441310.2:c.1553T>G	p.Leu518Ter	p.L518*	ENST00000441310	NM_000534.4	518	tTa/tGa																																																																															
PMS1	5378	MSKCC	GRCh37	2	190742037	190742037	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	132	300	0	ENST00000441310.2:c.2674T>G	p.Leu892Val	p.L892V	ENST00000441310	NM_000534.4	892	Tta/Gta																																																																															
VHL	7428	MSKCC	GRCh37	3	10191638	10191638	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	103	268	0	ENST00000256474.2:c.631A>G	p.Met211Val	p.M211V	ENST00000256474	NM_000551.3	211	Atg/Gtg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37090474	37090474	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	82	285	0	ENST00000231790.2:c.2069A>G	p.Tyr690Cys	p.Y690C	ENST00000231790	NM_000249.3	690	tAc/tGc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125569	47125569	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	176	457	0	ENST00000409792.3:c.5701G>T	p.Glu1901Ter	p.E1901*	ENST00000409792	NM_014159.6	1901	Gaa/Taa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163588	47163588	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	87	261	0	ENST00000409792.3:c.2538A>C	p.Lys846Asn	p.K846N	ENST00000409792	NM_014159.6	846	aaA/aaC																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52702662	52702662	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	67	193	0	ENST00000394830.3:c.237-1G>T		p.X79_splice	ENST00000394830	NM_018313.4	79																																																																																
GATA2	2624	MSKCC	GRCh37	3	128202732	128202732	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	92	350	1	ENST00000341105.2:c.988C>T	p.Arg330Ter	p.R330*	ENST00000341105	NM_032638.4	330	Cga/Tga																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138433485	138433485	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	105	311	0	ENST00000289153.2:c.1127A>C	p.Lys376Thr	p.K376T	ENST00000289153	NM_006219.2	376	aAa/aCa																																																																															
ATR	545	MSKCC	GRCh37	3	142261519	142261519	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	115	258	0	ENST00000350721.4:c.3438A>C	p.Glu1146Asp	p.E1146D	ENST00000350721	NM_001184.3	1146	gaA/gaC																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55140704	55140704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	122	359	0	ENST00000257290.5:c.1565G>A	p.Arg522His	p.R522H	ENST00000257290	NM_006206.4	522	cGt/cAt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156491	55156491	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	104	346	0	ENST00000257290.5:c.2892A>C	p.Lys964Asn	p.K964N	ENST00000257290	NM_006206.4	964	aaA/aaC																																																																															
KDR	3791	MSKCC	GRCh37	4	55956184	55956184	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	124	427	0	ENST00000263923.4:c.3131T>C	p.Ile1044Thr	p.I1044T	ENST00000263923	NM_002253.2	1044	aTc/aCc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467866	66467866	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56375573		P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	95	373	3	ENST00000273854.3:c.403C>T	p.Arg135Trp	p.R135W	ENST00000273854	NM_004439.5	135	Cgg/Tgg																																																																															
TET2	54790	MSKCC	GRCh37	4	106196497	106196497	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	129	366	0	ENST00000380013.4:c.4830T>G	p.Asn1610Lys	p.N1610K	ENST00000380013	NM_001127208.2	1610	aaT/aaG																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143094843	143094843	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	78	482	0	ENST00000262992.4:c.1301C>A	p.Ser434Tyr	p.S434Y	ENST00000262992	NM_001101669.1	434	tCt/tAt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143129648	143129648	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	143	397	0	ENST00000262992.4:c.1002G>T	p.Glu334Asp	p.E334D	ENST00000262992	NM_001101669.1	334	gaG/gaT																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153253762	153253762	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	40	236	0	ENST00000281708.4:c.971A>C	p.Lys324Thr	p.K324T	ENST00000281708	NM_033632.3	324	aAa/aCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541982	187541982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	132	350	0	ENST00000441802.2:c.5758G>A	p.Glu1920Lys	p.E1920K	ENST00000441802	NM_005245.3	1920	Gaa/Aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542896	187542896	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	127	296	0	ENST00000441802.2:c.4844T>C	p.Val1615Ala	p.V1615A	ENST00000441802	NM_005245.3	1615	gTc/gCc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627960	187627960	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	176	436	0	ENST00000441802.2:c.3022A>C	p.Lys1008Gln	p.K1008Q	ENST00000441802	NM_005245.3	1008	Aag/Cag																																																																															
SDHA	6389	MSKCC	GRCh37	5	226103	226103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	84	252	1	ENST00000264932.6:c.562C>T	p.Arg188Trp	p.R188W	ENST00000264932	NM_004168.2	188	Cgg/Tgg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576462	67576462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	172	375	0	ENST00000274335.5:c.741C>A	p.Phe247Leu	p.F247L	ENST00000274335		247	ttC/ttA																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589618	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519838		P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	96	260	0	ENST00000274335.5:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000274335		461	Cga/Tga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86670009	86670009	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	77	280	0	ENST00000274376.6:c.1806A>C	p.Glu602Asp	p.E602D	ENST00000274376	NM_002890.2	602	gaA/gaC																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672759	86672759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	125	331	0	ENST00000274376.6:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000274376	NM_002890.2	749	cGa/cAa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685312	86685312	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	90	163	0	ENST00000274376.6:c.3028C>T	p.Arg1010Ter	p.R1010*	ENST00000274376	NM_002890.2	1010	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174878	112174878	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	120	288	0	ENST00000257430.4:c.3587C>A	p.Ser1196Ter	p.S1196*	ENST00000257430	NM_000038.5	1196	tCa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112176843	112176843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	100	473	1	ENST00000257430.4:c.5552G>A	p.Gly1851Glu	p.G1851E	ENST00000257430	NM_000038.5	1851	gGa/gAa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931456	131931456	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	108	289	0	ENST00000265335.6:c.2161A>C	p.Lys721Gln	p.K721Q	ENST00000265335		721	Aaa/Caa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131977992	131977992	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	134	365	0	ENST00000265335.6:c.3875A>G	p.Asn1292Ser	p.N1292S	ENST00000265335		1292	aAc/aGc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149434869	149434869	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	155	460	0	ENST00000286301.3:c.2585A>G	p.Asn862Ser	p.N862S	ENST00000286301	NM_005211.3	862	aAc/aGc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149495496	149495496	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1083	198	631	1	ENST00000261799.4:c.3151G>T	p.Glu1051Ter	p.E1051*	ENST00000261799	NM_002609.3	1051	Gaa/Taa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180038451	180038451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	125	395	0	ENST00000261937.6:c.3566G>A	p.Arg1189His	p.R1189H	ENST00000261937	NM_182925.4	1189	cGc/cAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048632	180048632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	74	241	0	ENST00000261937.6:c.1930G>A	p.Ala644Thr	p.A644T	ENST00000261937	NM_182925.4	644	Gcg/Acg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911140	29911140	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	130	337	0	ENST00000376809.5:c.439T>G	p.Tyr147Asp	p.Y147D	ENST00000376809	NM_002116.7	147	Tac/Gac																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93955110	93955110	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1167	158	648	1	ENST00000369303.4:c.2788G>T	p.Glu930Ter	p.E930*	ENST00000369303	NM_004440.3	930	Gaa/Taa																																																																															
FYN	2534	MSKCC	GRCh37	6	112017629	112017629	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1339	234	695	0	ENST00000368678.4:c.884T>C	p.Ile295Thr	p.I295T	ENST00000368678		295	aTa/aCa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117677889	117677889	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	143	457	0	ENST00000368508.3:c.4044G>T	p.Glu1348Asp	p.E1348D	ENST00000368508	NM_002944.2	1348	gaG/gaT																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138197159	138197159	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	130	393	0	ENST00000237289.4:c.661G>T	p.Gly221Cys	p.G221C	ENST00000237289	NM_001270507.1	221	Ggt/Tgt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163911	152163911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	124	398	0	ENST00000206249.3:c.632G>T	p.Arg211Ile	p.R211I	ENST00000206249	NM_000125.3	211	aGa/aTa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100550	157100550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	98	339	2	ENST00000346085.5:c.1487G>T	p.Arg496Met	p.R496M	ENST00000346085	NM_020732.3	496	aGg/aTg																																																																															
PARK2	5071	MSKCC	GRCh37	6	161771199	161771199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	46	218	0	ENST00000366898.1:c.1330G>A	p.Glu444Lys	p.E444K	ENST00000366898	NM_004562.2	444	Gag/Aag																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206867	162206867	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	53	329	0	ENST00000366898.1:c.808A>G	p.Thr270Ala	p.T270A	ENST00000366898	NM_004562.2	270	Aca/Gca																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206879	162206879	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	52	312	0	ENST00000366898.1:c.796T>G	p.Leu266Val	p.L266V	ENST00000366898	NM_004562.2	266	Tta/Gta																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729551	41729551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1236	217	757	0	ENST00000242208.4:c.978C>A	p.Phe326Leu	p.F326L	ENST00000242208	NM_002192.2	326	ttC/ttA																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459493	50459493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	114	302	0	ENST00000331340.3:c.782C>A	p.Ser261Tyr	p.S261Y	ENST00000331340	NM_006060.4	261	tCt/tAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273279	55273279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201717672		P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	111	209	0	ENST00000275493.2:c.3602C>T	p.Ala1201Val	p.A1201V	ENST00000275493	NM_005228.3	1201	gCg/gTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81350062	81350062	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs759145490		P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	111	339	1	ENST00000222390.5:c.1270C>T	p.Arg424Cys	p.R424C	ENST00000222390	NM_000601.4	424	Cgt/Tgt																																																																															
HGF	3082	MSKCC	GRCh37	7	81388115	81388115	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	71	324	0	ENST00000222390.5:c.260T>G	p.Phe87Cys	p.F87C	ENST00000222390	NM_000601.4	87	tTt/tGt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508631	106508631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	44	228	0	ENST00000359195.3:c.625G>A	p.Glu209Lys	p.E209K	ENST00000359195	NM_002649.2	209	Gag/Aag																																																																															
MET	4233	MSKCC	GRCh37	7	116340177	116340177	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200074800		P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	123	316	1	ENST00000397752.3:c.1039G>A	p.Ala347Thr	p.A347T	ENST00000397752	NM_000245.2	347	Gca/Aca																																																																															
MET	4233	MSKCC	GRCh37	7	116403290	116403290	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	178	458	0	ENST00000397752.3:c.2551T>C	p.Ser851Pro	p.S851P	ENST00000397752	NM_000245.2	851	Tca/Cca																																																																															
EZH2	2146	MSKCC	GRCh37	7	148511095	148511095	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	89	197	0	ENST00000320356.2:c.1807A>C	p.Asn603His	p.N603H	ENST00000320356	NM_004456.4	603	Aat/Cat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132852	152132852	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	84	279	0	ENST00000262189.6:c.20A>G	p.Lys7Arg	p.K7R	ENST00000262189	NM_170606.2	7	aAg/aGg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372550	55372550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	70	172	0	ENST00000297316.4:c.1240G>A	p.Val414Met	p.V414M	ENST00000297316	NM_022454.3	414	Gtg/Atg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739866	145739866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	128	464	2	ENST00000428558.2:c.1664C>T	p.Ser555Leu	p.S555L	ENST00000428558	NM_004260.3	555	tCg/tTg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080561	5080561	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	128	386	0	ENST00000381652.3:c.2312A>G	p.Gln771Arg	p.Q771R	ENST00000381652	NM_004972.3	771	cAg/cGg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98212216	98212216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	77	200	2	ENST00000331920.6:c.3456C>A	p.Phe1152Leu	p.F1152L	ENST00000331920	NM_000264.3	1152	ttC/ttA																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229458	98229458	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	157	517	0	ENST00000331920.6:c.2500T>G	p.Leu834Val	p.L834V	ENST00000331920	NM_000264.3	834	Ttg/Gtg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229682	98229682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	55	179	0	ENST00000331920.6:c.2276G>A	p.Gly759Asp	p.G759D	ENST00000331920	NM_000264.3	759	gGc/gAc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907037	101907037	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	90	244	0	ENST00000374994.4:c.997G>T	p.Asp333Tyr	p.D333Y	ENST00000374994	NM_004612.2	333	Gat/Tat																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781510	135781510	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1455	260	758	0	ENST00000298552.3:c.1455A>C	p.Glu485Asp	p.E485D	ENST00000298552	NM_001162426.1	485	gaA/gaC																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624245	89624245	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	39	99	0	ENST00000371953.3:c.19G>T	p.Glu7Ter	p.E7*	ENST00000371953	NM_000314.4	7	Gag/Tag																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274782	123274782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	155	383	1	ENST00000358487.5:c.1136C>A	p.Ala379Asp	p.A379D	ENST00000358487	NM_000141.4	379	gCc/gAc																																																																															
EED	8726	MSKCC	GRCh37	11	85989557	85989557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	145	400	0	ENST00000263360.6:c.1316G>A	p.Arg439Gln	p.R439Q	ENST00000263360	NM_003797.3	439	cGa/cAa																																																																															
EED	8726	MSKCC	GRCh37	11	85989563	85989563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	137	373	2	ENST00000263360.6:c.1322G>A	p.Arg441Gln	p.R441Q	ENST00000263360	NM_003797.3	441	cGa/cAa																																																																															
BIRC3	330	MSKCC	GRCh37	11	102201872	102201872	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1463	234	728	1	ENST00000263464.3:c.1224G>T	p.Glu408Asp	p.E408D	ENST00000263464	NM_001165.4	408	gaG/gaT																																																																															
ATM	472	MSKCC	GRCh37	11	108106523	108106523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	120	284	0	ENST00000278616.4:c.458G>A	p.Arg153Lys	p.R153K	ENST00000278616	NM_000051.3	153	aGa/aAa																																																																															
ATM	472	MSKCC	GRCh37	11	108121669	108121669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1132	173	542	1	ENST00000278616.4:c.1477C>T	p.Arg493Cys	p.R493C	ENST00000278616	NM_000051.3	493	Cgt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108155088	108155088	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	127	321	0	ENST00000278616.4:c.3881T>G	p.Ile1294Ser	p.I1294S	ENST00000278616	NM_000051.3	1294	aTt/aGt																																																																															
ATM	472	MSKCC	GRCh37	11	108202198	108202198	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	90	278	0	ENST00000278616.4:c.7543A>C	p.Lys2515Gln	p.K2515Q	ENST00000278616	NM_000051.3	2515	Aaa/Caa																																																																															
ATM	472	MSKCC	GRCh37	11	108202688	108202688	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	67	308	0	ENST00000278616.4:c.7712T>G	p.Phe2571Cys	p.F2571C	ENST00000278616	NM_000051.3	2571	tTt/tGt																																																																															
CBL	867	MSKCC	GRCh37	11	119142539	119142539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	157	399	1	ENST00000264033.4:c.538C>T	p.Arg180Trp	p.R180W	ENST00000264033	NM_005188.3	180	Cgg/Tgg																																																																															
CBL	867	MSKCC	GRCh37	11	119170272	119170272	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	119	333	0	ENST00000264033.4:c.2502A>C	p.Glu834Asp	p.E834D	ENST00000264033	NM_005188.3	834	gaA/gaC																																																																															
KDM5A	5927	MSKCC	GRCh37	12	406326	406326	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	153	399	0	ENST00000399788.2:c.4115A>C	p.Asn1372Thr	p.N1372T	ENST00000399788	NM_001042603.1	1372	aAt/aCt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	419031	419031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	56	320	1	ENST00000399788.2:c.3316G>A	p.Asp1106Asn	p.D1106N	ENST00000399788	NM_001042603.1	1106	Gac/Aac																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18496264	18496264	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	72	288	0	ENST00000266497.5:c.1399T>G	p.Phe467Val	p.F467V	ENST00000266497		467	Ttt/Gtt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552634	18552634	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	143	511	0	ENST00000266497.5:c.2045T>C	p.Phe682Ser	p.F682S	ENST00000266497		682	tTc/tCc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230399	46230399	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	130	397	0	ENST00000334344.6:c.733G>T	p.Glu245Ter	p.E245*	ENST00000334344	NM_152641.2	245	Gaa/Taa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46298771	46298771	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	135	380	0	ENST00000334344.6:c.5418A>C	p.Glu1806Asp	p.E1806D	ENST00000334344	NM_152641.2	1806	gaA/gaC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435768	49435768	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	153	357	0	ENST00000301067.7:c.6115T>C	p.Ser2039Pro	p.S2039P	ENST00000301067	NM_003482.3	2039	Tca/Cca																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865135	57865135	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1516	313	763	0	ENST00000228682.2:c.2612A>G	p.Asp871Gly	p.D871G	ENST00000228682	NM_005269.2	871	gAt/gGt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865767	57865767	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1226	238	657	0	ENST00000228682.2:c.3244A>G	p.Asn1082Asp	p.N1082D	ENST00000228682	NM_005269.2	1082	Aac/Gac																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112915793	112915793	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	50	306	0	ENST00000351677.2:c.1066A>G	p.Thr356Ala	p.T356A	ENST00000351677	NM_002834.3	356	Aca/Gca																																																																															
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	121	412	0	ENST00000320574.5:c.1231G>C	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ctg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26974624	26974624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	107	314	0	ENST00000381527.3:c.968G>A	p.Arg323Gln	p.R323Q	ENST00000381527	NM_001260.1	323	cGa/cAa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964163	28964163	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	115	387	0	ENST00000282397.4:c.1739A>G	p.Asn580Ser	p.N580S	ENST00000282397	NM_002019.4	580	aAc/aGc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913081	32913081	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1560	239	716	0	ENST00000380152.3:c.4589A>C	p.Lys1530Thr	p.K1530T	ENST00000380152		1530	aAa/aCa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95578514	95578514	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	90	248	0	ENST00000343455.3:c.2111A>C	p.Lys704Thr	p.K704T	ENST00000343455	NM_177438.2	704	aAa/aCa																																																																															
MGA	23269	MSKCC	GRCh37	15	41961914	41961914	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1411	249	674	0	ENST00000219905.7:c.822G>T	p.Lys274Asn	p.K274N	ENST00000219905	NM_001164273.1	274	aaG/aaT																																																																															
BLM	641	MSKCC	GRCh37	15	91308604	91308604	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1181	141	475	0	ENST00000355112.3:c.2153C>A	p.Ser718Ter	p.S718*	ENST00000355112	NM_000057.2	718	tCa/tAa																																																																															
BLM	641	MSKCC	GRCh37	15	91337508	91337508	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	150	385	0	ENST00000355112.3:c.3131A>G	p.Tyr1044Cys	p.Y1044C	ENST00000355112	NM_000057.2	1044	tAc/tGc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3831292	3831292	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	121	319	0	ENST00000262367.5:c.1589A>G	p.Asn530Ser	p.N530S	ENST00000262367	NM_004380.2	530	aAc/aGc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822708	72822708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1449	267	815	1	ENST00000268489.5:c.9467G>A	p.Ser3156Asn	p.S3156N	ENST00000268489	NM_006885.3	3156	aGc/aAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350096	89350096	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1286	229	738	0	ENST00000301030.4:c.2854A>C	p.Lys952Gln	p.K952Q	ENST00000301030	NM_001256183.1	952	Aag/Cag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351286	89351286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1488	275	768	0	ENST00000301030.4:c.1664C>A	p.Ser555Tyr	p.S555Y	ENST00000301030	NM_001256183.1	555	tCt/tAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89354962	89354962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1390	243	727	3	ENST00000301030.4:c.718G>A	p.Asp240Asn	p.D240N	ENST00000301030	NM_001256183.1	240	Gac/Aac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961052	15961052	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	109	240	0	ENST00000268712.3:c.6169-1G>A		p.X2057_splice	ENST00000268712	NM_006311.3	2057																																																																																
NCOR1	9611	MSKCC	GRCh37	17	15983990	15983990	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	164	341	0	ENST00000268712.3:c.3229G>T	p.Glu1077Ter	p.E1077*	ENST00000268712	NM_006311.3	1077	Gaa/Taa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16012219	16012219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	114	254	0	ENST00000268712.3:c.2063G>A	p.Arg688Gln	p.R688Q	ENST00000268712	NM_006311.3	688	cGa/cAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29556062	29556062	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	89	199	0	ENST00000358273.4:c.2429A>G	p.Lys810Arg	p.K810R	ENST00000358273	NM_001042492.2	810	aAg/aGg																																																																															
NF1	4763	MSKCC	GRCh37	17	29701150	29701150	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	76	301	0	ENST00000358273.4:c.8497A>G	p.Asn2833Asp	p.N2833D	ENST00000358273	NM_001042492.2	2833	Aat/Gat																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866710	37866710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	112	302	0	ENST00000269571.5:c.877G>A	p.Ala293Thr	p.A293T	ENST00000269571		293	Gcc/Acc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78866640	78866640	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	84	237	0	ENST00000306801.3:c.2213C>A	p.Ser738Tyr	p.S738Y	ENST00000306801	NM_020761.2	738	tCt/tAt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39575856	39575856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	63	213	2	ENST00000262039.4:c.789G>T	p.Glu263Asp	p.E263D	ENST00000262039	NM_002647.2	263	gaG/gaT																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4117512	4117512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	35	164	1	ENST00000262948.5:c.208G>A	p.Asp70Asn	p.D70N	ENST00000262948	NM_030662.3	70	Gat/Aat																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5208357	5208357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	121	402	0	ENST00000357368.4:c.5533C>T	p.Pro1845Ser	p.P1845S	ENST00000357368	NM_002850.3	1845	Ccg/Tcg																																																																															
INSR	3643	MSKCC	GRCh37	19	7172404	7172404	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	125	391	0	ENST00000302850.5:c.1165G>T	p.Glu389Ter	p.E389*	ENST00000302850	NM_000208.2	389	Gaa/Taa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375108	31375108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	76	267	0	ENST00000328111.2:c.505G>A	p.Asp169Asn	p.D169N	ENST00000328111	NM_006892.3	169	Gac/Aac																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31394046	31394046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	92	266	0	ENST00000328111.2:c.2333C>T	p.Ser778Leu	p.S778L	ENST00000328111	NM_006892.3	778	tCg/tTg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39725922	39725922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	66	226	0	ENST00000361337.2:c.793G>A	p.Asp265Asn	p.D265N	ENST00000361337	NM_003286.2	265	Gac/Aac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40747132	40747132	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	94	268	1	ENST00000373198.4:c.2950C>T	p.Gln984Ter	p.Q984*	ENST00000373198	NM_133170.3	984	Cag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944523	40944523	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	103	369	0	ENST00000373198.4:c.1979C>A	p.Ser660Tyr	p.S660Y	ENST00000373198	NM_133170.3	660	tCt/tAt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44515623	44515623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	64	374	0	ENST00000291552.4:c.273G>T	p.Glu91Asp	p.E91D	ENST00000291552	NM_006758.2	91	gaG/gaT																																																																															
EP300	2033	MSKCC	GRCh37	22	41565543	41565543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	189	461	0	ENST00000263253.7:c.4209C>A	p.Phe1403Leu	p.F1403L	ENST00000263253	NM_001429.3	1403	ttC/ttA																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921639	39921639	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	150	172	0	ENST00000378444.4:c.4181T>C	p.Val1394Ala	p.V1394A	ENST00000378444	NM_001123385.1	1394	gTc/gCc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39935784	39935784	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	207	250	0	ENST00000378444.4:c.88A>G	p.Lys30Glu	p.K30E	ENST00000378444	NM_001123385.1	30	Aaa/Gaa																																																																															
ATRX	546	MSKCC	GRCh37	X	76875925	76875925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	176	269	2	ENST00000373344.5:c.5210C>A	p.Ser1737Tyr	p.S1737Y	ENST00000373344	NM_000489.3	1737	tCt/tAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906535	32906536	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	114	423	0	ENST00000380152.3:c.925dup	p.Ser309PhefsTer6	p.S309Ffs*6	ENST00000380152		307	agt/agTt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0010754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	159	473	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106822	27106822	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	192	443	1	ENST00000324856.7:c.6433G>T	p.Glu2145Ter	p.E2145*	ENST00000324856	NM_006015.4	2145	Gag/Tag																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056584	26056584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	134	197	0	ENST00000343677.2:c.73G>A	p.Ala25Thr	p.A25T	ENST00000343677	NM_005319.3	25	Gcc/Acc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55260477	55260477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	43	572	1	ENST00000275493.2:c.2644G>A	p.Ala882Thr	p.A882T	ENST00000275493	NM_005228.3	882	Gca/Aca																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258800	115258800	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0010754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	23	292	0	ENST00000369535.4:c.-17-2A>G		p.X6_splice	ENST00000369535	NM_002524.4	6																																																																																
GATA3	2625	MSKCC	GRCh37	10	8111503	8111509	+	frameshift_variant	Frame_Shift_Del	DEL	GGAATGC	GGAATGC	TG			P-0010754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	410	571	0	ENST00000346208.3:c.989_995delinsTG	p.Arg330MetfsTer20	p.R330Mfs*20	ENST00000346208		330	aGGAATGCc/aTGc																																																																															
EP300	2033	MSKCC	GRCh37	22	41566453	41566453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	81	491	0	ENST00000263253.7:c.4330G>A	p.Asp1444Asn	p.D1444N	ENST00000263253	NM_001429.3	1444	Gat/Aat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47004912	47004912	+	intron_variant	Intron	SNP	G	G	T			P-0010841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	53	329	0	ENST00000329236.7:c.-126+28G>T		p.*42*	ENST00000329236	NM_001204466.1																																																																																	
ERBB2	2064	MSKCC	GRCh37	17	37880998	37880998	+	protein_altering_variant	In_Frame_Ins	INS	G	G	TTGT			P-0010841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	134	451	0	ENST00000269571.5:c.2327delinsTTGT	p.Gly776delinsValVal	p.G776delinsVV	ENST00000269571		776	gGt/gTTGTt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010926-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	69	199	0				ENST00000310581	NM_198253.2																																																																																	
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0010926-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	310	564	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	190	439	0	ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc																																																																															
POLE	5426	MSKCC	GRCh37	12	133248872	133248872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	53	389	0	ENST00000320574.5:c.1723G>A	p.Glu575Lys	p.E575K	ENST00000320574	NM_006231.2	575	Gag/Aag																																																																															
BARD1	580	MSKCC	GRCh37	2	215634032	215634032	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	133	384	0	ENST00000260947.4:c.1319A>G	p.Asp440Gly	p.D440G	ENST00000260947	NM_000465.2	440	gAc/gGc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441252	52441252	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	215	428	0	ENST00000460680.1:c.518A>C	p.Tyr173Ser	p.Y173S	ENST00000460680	NM_004656.3	173	tAt/tCt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185190800	185190800	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	155	444	0	ENST00000265026.3:c.1681G>C	p.Glu561Gln	p.E561Q	ENST00000265026	NM_004721.4	561	Gaa/Caa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38991061	38991061	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	121	291	0	ENST00000357387.3:c.573C>G	p.Ile191Met	p.I191M	ENST00000357387	NM_152756.3	191	atC/atG																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636777	176636777	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	141	382	0	ENST00000439151.2:c.1377C>G	p.Asp459Glu	p.D459E	ENST00000439151	NM_022455.4	459	gaC/gaG																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249386	110249386	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	373	645	0	ENST00000374672.4:c.1187A>T	p.His396Leu	p.H396L	ENST00000374672	NM_004235.4	396	cAc/cTc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127703	64127703	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	45	312	0	ENST00000334205.4:c.196G>C	p.Val66Leu	p.V66L	ENST00000334205	NM_003942.2	66	Gtg/Ctg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999597	100999597	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	166	648	0	ENST00000325455.5:c.205C>G	p.Pro69Ala	p.P69A	ENST00000325455	NM_001202474.3	69	Ccc/Gcc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344419	118344419	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	43	238	0	ENST00000534358.1:c.2545A>T	p.Arg849Ter	p.R849*	ENST00000534358	NM_005933.3	849	Aga/Tga																																																																															
FLT3	2322	MSKCC	GRCh37	13	28602348	28602348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	185	476	0	ENST00000241453.7:c.2020A>C	p.Ile674Leu	p.I674L	ENST00000241453	NM_004119.2	674	Att/Ctt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2135234	2135234	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	116	369	0	ENST00000219476.3:c.4573C>T	p.Gln1525Ter	p.Q1525*	ENST00000219476	NM_000548.3	1525	Cag/Tag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032264	10032264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	90	292	1	ENST00000330684.3:c.559G>A	p.Val187Ile	p.V187I	ENST00000330684	NM_001134407.1	187	Gtc/Atc																																																																															
ERG	2078	MSKCC	GRCh37	21	39775440	39775440	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	89	385	0	ENST00000288319.7:c.580T>C	p.Tyr194His	p.Y194H	ENST00000288319	NM_182918.3	194	Tac/Cac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929448	44929449	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	232	518	0	ENST00000377967.4:c.2548_2549insT	p.Gly850ValfsTer6	p.G850Vfs*6	ENST00000377967	NM_021140.2	850	ggg/gTgg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102201973	102201987	+	splice_donor_variant,intron_variant	Splice_Site	DEL	GTATGTAGATTTATT	GTATGTAGATTTATT	-			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1095	66	524	0	ENST00000263464.3:c.1324+1_1324+15del		p.X442_splice	ENST00000263464	NM_001165.4	442																																																																																
BIRC3	330	MSKCC	GRCh37	11	102201966	102201967	+	protein_altering_variant	In_Frame_Ins	INS	GA	GA	TCCTTATTTCATATAGG			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1261	90	557	0	ENST00000263464.3:c.1318_1319delinsTCCTTATTTCATATAGG	p.Glu440delinsSerLeuPheHisIleGly	p.E440delinsSLFHIG	ENST00000263464	NM_001165.4	440	GAa/TCCTTATTTCATATAGGa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0011033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	527	170	1				ENST00000310581	NM_198253.2																																																																																	
ERBB2	2064	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0011033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1124	799	565	0	ENST00000269571.5:c.2331_2339dupGGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044502	47044502	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	200	528	0	ENST00000329236.7:c.1765G>C	p.Glu589Gln	p.E589Q	ENST00000329236	NM_001204466.1	589	Gaa/Caa																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	199	737	3	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	72	293	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717769	89717770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	93	286	0	ENST00000371953.3:c.800dup	p.Asp268GlyfsTer30	p.D268Gfs*30	ENST00000371953	NM_000314.4	265	cta/ctAa																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	260	801	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	181	581	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	237	638	0	ENST00000342505.4:c.1016delA	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	247	762	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2956964	2956964	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1395288944		P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	181	581	1	ENST00000396946.4:c.2663G>A	p.Arg888His	p.R888H	ENST00000396946	NM_032415.4	888	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	167	530	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	200	544	7	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	195	682	1	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1461	408	1315	8	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																															
APC	324	MSKCC	GRCh37	5	112164611	112164611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	131	464	2	ENST00000257430.4:c.1685C>T	p.Thr562Met	p.T562M	ENST00000257430	NM_000038.5	562	aCg/aTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923087	39923087	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	296	599	0	ENST00000378444.4:c.3621delA	p.Lys1207AsnfsTer31	p.K1207Nfs*31	ENST00000378444	NM_001123385.1	1207	aaA/aa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351359	89351359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1392	403	1287	4	ENST00000301030.4:c.1591G>A	p.Ala531Thr	p.A531T	ENST00000301030	NM_001256183.1	531	Gcc/Acc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524834	187524834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	247	721	0	ENST00000441802.2:c.10846G>A	p.Val3616Ile	p.V3616I	ENST00000441802	NM_005245.3	3616	Gta/Ata																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270530	98270530	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	32	402	1	ENST00000331920.6:c.114delG	p.Leu39CysfsTer41	p.L39Cfs*41	ENST00000331920	NM_000264.3	38	ggG/gg																																																																															
PIM1	5292	MSKCC	GRCh37	6	37140891	37140891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	232	799	0	ENST00000373509.5:c.727G>A	p.Glu243Lys	p.E243K	ENST00000373509	NM_002648.3	243	Gag/Aag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57474036	57474036	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750429818		P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	96	338	0	ENST00000371085.3:c.253G>A	p.Asp85Asn	p.D85N	ENST00000371085	NM_000516.4	85	Gat/Aat																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367798	15367798	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144627512		P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	202	660	0	ENST00000263377.2:c.1528C>T	p.Arg510Trp	p.R510W	ENST00000263377	NM_058243.2	510	Cgg/Tgg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020769	37020769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1043	238	791	0	ENST00000358127.4:c.76del	p.Val26PhefsTer3	p.V26Ffs*3	ENST00000358127	NM_001280556.1	26	Gtt/tt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	341244	341244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	275	764	2	ENST00000262320.3:c.2240C>T	p.Ala747Val	p.A747V	ENST00000262320	NM_003502.3	747	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444809	49444809	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	101	749	0	ENST00000301067.7:c.2657delC	p.Pro886LeufsTer44	p.P886Lfs*44	ENST00000301067	NM_003482.3	886	cCt/ct																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463266	25463266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	187	586	0	ENST00000264709.3:c.2227C>T	p.Pro743Ser	p.P743S	ENST00000264709	NM_175629.2	743	Ccc/Tcc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057761	27057761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1390	420	1254	1	ENST00000324856.7:c.1469C>A	p.Pro490Gln	p.P490Q	ENST00000324856	NM_006015.4	490	cCg/cAg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65303750	65303750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	275	733	0	ENST00000342505.4:c.3005G>A	p.Arg1002Gln	p.R1002Q	ENST00000342505	NM_002227.2	1002	cGg/cAg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466468	120466468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	176	853	2	ENST00000256646.2:c.4651G>A	p.Val1551Ile	p.V1551I	ENST00000256646	NM_024408.3	1551	Gta/Ata																																																																															
XPO1	7514	MSKCC	GRCh37	2	61729157	61729157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	179	767	0	ENST00000401558.2:c.382G>A	p.Gly128Arg	p.G128R	ENST00000401558	NM_003400.3	128	Gga/Aga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162236	47162236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1085	62	733	0	ENST00000409792.3:c.3890G>A	p.Arg1297His	p.R1297H	ENST00000409792	NM_014159.6	1297	cGt/cAt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026838	71026838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138415721		P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	129	588	2	ENST00000318789.4:c.1384G>A	p.Ala462Thr	p.A462T	ENST00000318789	NM_032682.5	462	Gca/Aca																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185184673	185184673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1265	91	1029	1	ENST00000265026.3:c.1565C>T	p.Pro522Leu	p.P522L	ENST00000265026	NM_004721.4	522	cCt/cTt																																																																															
FIP1L1	81608	MSKCC	GRCh37	4	54292106	54292106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	114	457	0	ENST00000337488.6:c.991C>T	p.Arg331Trp	p.R331W	ENST00000337488	NM_030917.3	331	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247195	153247195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	221	779	0	ENST00000281708.4:c.1607C>T	p.Thr536Met	p.T536M	ENST00000281708	NM_033632.3	536	aCg/aTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295339	1295339	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	125	508	2				ENST00000310581	NM_198253.2																																																																																	
CSF1R	1436	MSKCC	GRCh37	5	149440532	149440532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	180	571	3	ENST00000286301.3:c.1862C>T	p.Thr621Met	p.T621M	ENST00000286301	NM_005211.3	621	aCg/aTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721031	176721031	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	71	699	0	ENST00000439151.2:c.6662A>G	p.Tyr2221Cys	p.Y2221C	ENST00000439151	NM_022455.4	2221	tAt/tGt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910533	29910533	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	50	451	0	ENST00000376809.5:c.74-1G>A		p.X25_splice	ENST00000376809	NM_002116.7	25																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32180969	32180969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	235	745	0	ENST00000375023.3:c.2381C>T	p.Ala794Val	p.A794V	ENST00000375023	NM_004557.3	794	gCc/gTc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138198219	138198219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	84	376	0	ENST00000237289.4:c.812G>A	p.Arg271Gln	p.R271Q	ENST00000237289	NM_001270507.1	271	cGa/cAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55229303	55229303	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	164	857	0	ENST00000275493.2:c.1610A>T	p.Asp537Val	p.D537V	ENST00000275493	NM_005228.3	537	gAc/gTc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117859816	117859816	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1212	301	1018	0	ENST00000297338.2:c.1819C>T	p.Gln607Ter	p.Q607*	ENST00000297338	NM_006265.2	607	Caa/Taa																																																																															
RAD52	5893	MSKCC	GRCh37	12	1036341	1036341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1040	245	877	2	ENST00000358495.3:c.437C>T	p.Ala146Val	p.A146V	ENST00000358495	NM_134424.2	146	gCg/gTg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12037451	12037451	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	261	721	0	ENST00000396373.4:c.1082A>G	p.Glu361Gly	p.E361G	ENST00000396373	NM_001987.4	361	gAg/gGg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103528104	103528104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140930348		P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	167	443	1	ENST00000355739.4:c.3412G>A	p.Val1138Met	p.V1138M	ENST00000355739	NM_000123.3	1138	Gtg/Atg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435750	110435750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	40	140	0	ENST00000375856.3:c.2651G>A	p.Arg884His	p.R884H	ENST00000375856	NM_003749.2	884	cGc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42058345	42058345	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1114	340	1128	0	ENST00000219905.7:c.8065A>G	p.Arg2689Gly	p.R2689G	ENST00000219905	NM_001164273.1	2689	Agg/Ggg																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66774216	66774216	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	210	730	0	ENST00000307102.5:c.692C>T	p.Ser231Leu	p.S231L	ENST00000307102	NM_002755.3	231	tCg/tTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779382	3779382	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143180774		P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	235	686	0	ENST00000262367.5:c.5666C>T	p.Pro1889Leu	p.P1889L	ENST00000262367	NM_004380.2	1889	cCg/cTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827613	72827613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1180	335	1159	2	ENST00000268489.5:c.8968G>A	p.Val2990Ile	p.V2990I	ENST00000268489	NM_006885.3	2990	Gtt/Att																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131232	17131232	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	312	902	1	ENST00000285071.4:c.220C>A	p.Pro74Thr	p.P74T	ENST00000285071	NM_144997.5	74	Ccg/Acg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264354	30264354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	129	228	4	ENST00000322652.5:c.89C>T	p.Ala30Val	p.A30V	ENST00000322652	NM_015355.2	30	gCg/gTg																																																																															
MAP3K14	9020	MSKCC	GRCh37	17	43344772	43344772	+	splice_donor_variant,non_coding_transcript_variant	Splice_Site	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	312	781	0	ENST00000344686.2:n.2432+1G>A		p.X811_splice	ENST00000344686		811																																																																																
BCL2	596	MSKCC	GRCh37	18	60985358	60985358	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1230	129	865	0	ENST00000333681.4:c.542T>C	p.Leu181Pro	p.L181P	ENST00000333681		181	cTg/cCg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222225	5222225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	184	670	1	ENST00000357368.4:c.3110C>T	p.Pro1037Leu	p.P1037L	ENST00000357368	NM_002850.3	1037	cCc/cTc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5273473	5273473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	296	838	0	ENST00000357368.4:c.359C>T	p.Ala120Val	p.A120V	ENST00000357368	NM_002850.3	120	gCc/gTc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250425	10250425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	218	713	2	ENST00000340748.4:c.3827G>A	p.Arg1276His	p.R1276H	ENST00000340748		1276	cGc/cAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144026	11144026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	234	723	0	ENST00000344626.4:c.3607C>T	p.Arg1203Cys	p.R1203C	ENST00000344626	NM_003072.3	1203	Cgc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288835	15288835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	121	246	3	ENST00000263388.2:c.3904G>A	p.Val1302Ile	p.V1302I	ENST00000263388	NM_000435.2	1302	Gtc/Atc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299808	15299808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	202	701	1	ENST00000263388.2:c.1370G>A	p.Cys457Tyr	p.C457Y	ENST00000263388	NM_000435.2	457	tGt/tAt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271908	18271908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	57	548	0	ENST00000222254.8:c.511G>T	p.Ala171Ser	p.A171S	ENST00000222254	NM_005027.3	171	Gct/Tct																																																																															
ERG	2078	MSKCC	GRCh37	21	39755574	39755574	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	235	623	0	ENST00000288319.7:c.1191G>T	p.Gln397His	p.Q397H	ENST00000288319	NM_182918.3	397	caG/caT																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53230805	53230805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	327	459	1	ENST00000375401.3:c.1988C>T	p.Ala663Val	p.A663V	ENST00000375401	NM_004187.3	663	gCg/gTg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29095848	29095849	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	275	799	0	ENST00000328354.6:c.985dup	p.Tyr329LeufsTer12	p.Y329Lfs*12	ENST00000328354	NM_007194.3	329	tac/tTac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828285	72828286	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	351	1213	0	ENST00000268489.5:c.8295dup	p.Asp2766Ter	p.D2766*	ENST00000268489	NM_006885.3	2765	-/T																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433903	49433903	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	205	683	0	ENST00000301067.7:c.7650del	p.Val2551SerfsTer32	p.V2551Sfs*32	ENST00000301067	NM_003482.3	2550	ccT/cc																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495765	72495765	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	193	679	0	ENST00000477973.2:c.305del	p.Arg103AspfsTer33	p.R103Dfs*33	ENST00000477973	NM_012234.5	103	Aga/ga																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965348	25965348	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	211	648	0	ENST00000435504.4:c.3858del	p.Glu1287SerfsTer37	p.E1287Sfs*37	ENST00000435504		1286	ccC/cc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692825	89692826	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	61	197	0	ENST00000371953.3:c.313dup	p.Cys105LeufsTer2	p.C105Lfs*2	ENST00000371953	NM_000314.4	103	-/T																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945961	17945961	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1065	70	919	0	ENST00000458235.1:c.1978del	p.Ala660LeufsTer10	p.A660Lfs*10	ENST00000458235	NM_000215.3	660	Gct/ct																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966176	25966179	+	frameshift_variant	Frame_Shift_Del	DEL	TCTC	TCTC	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	213	849	0	ENST00000435504.4:c.3027_3030del	p.Glu1009AspfsTer35	p.E1009Dfs*35	ENST00000435504		1009	gaGAGA/ga																																																																															
MST1	4485	MSKCC	GRCh37	3	49722906	49722906	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	29	190	0	ENST00000449682.2:c.1421del	p.Pro474GlnfsTer52	p.P474Qfs*52	ENST00000449682	NM_020998.3	474	cCa/ca																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119794	70119794	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	257	746	0	ENST00000245479.2:c.800del	p.Pro267LeufsTer12	p.P267Lfs*12	ENST00000245479	NM_000346.3	266	Ccc/cc																																																																															
RHEB	6009	MSKCC	GRCh37	7	151164251	151164252	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	150	409	0	ENST00000262187.5:c.508dup	p.Met170AsnfsTer31	p.M170Nfs*31	ENST00000262187	NM_005614.3	170	atg/aAtg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47639608	47639608	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	143	590	0	ENST00000233146.2:c.701del	p.Thr234LysfsTer12	p.T234Kfs*12	ENST00000233146	NM_000251.2	234	aCa/aa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905324	50905324	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1191	323	1152	0	ENST00000440232.2:c.537del	p.Arg180GlyfsTer3	p.R180Gfs*3	ENST00000440232	NM_002691.3	178	Ggg/gg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630471	47630473	+	frameshift_variant	Frame_Shift_Del	DEL	CGA	CGA	TT			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	254	599	0	ENST00000233146.2:c.141_143delinsTT	p.Glu48TrpfsTer16	p.E48Wfs*16	ENST00000233146	NM_000251.2	47	ggCGAg/ggTTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0011568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	90	145	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519997		P-0011568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	201	494	0	ENST00000269305.4:c.332T>C	p.Leu111Pro	p.L111P	ENST00000269305	NM_001126112.2	111	cTg/cCg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913385		P-0011568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	33	236	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521483	46521483	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	61	624	2	ENST00000262741.5:c.925C>T	p.Arg309Ter	p.R309*	ENST00000262741	NM_003629.3	309	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971125	21971126	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGTGGCGGGGTC			P-0011568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	23	233	0	ENST00000304494.5:c.220_232dup	p.Leu78ArgfsTer46	p.L78Rfs*46	ENST00000304494	NM_000077.4	78	ctc/cGACCCCGCCACTCtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	104	365	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579525	7579525	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	425	483	2	ENST00000269305.4:c.162del	p.Phe54LeufsTer69	p.F54Lfs*69	ENST00000269305	NM_001126112.2	54	ttC/tt																																																																															
RB1	5925	MSKCC	GRCh37	13	49027168	49027168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	326	492	3	ENST00000267163.4:c.1735C>T	p.Arg579Ter	p.R579*	ENST00000267163	NM_000321.2	579	Cga/Tga																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729610	162729610	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	313	329	0	ENST00000367921.3:c.696G>C	p.Leu232Phe	p.L232F	ENST00000367921	NM_006182.2	232	ttG/ttC																																																																															
INHA	3623	MSKCC	GRCh37	2	220437275	220437275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	687	755	0	ENST00000243786.2:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000243786	NM_002191.3	60	cGa/cAa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9783346	9783346	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	250	473	2	ENST00000377346.4:c.2590C>A	p.Pro864Thr	p.P864T	ENST00000377346	NM_005026.3	864	Ccg/Acg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464459	25464459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	439	456	0	ENST00000264709.3:c.2054G>T	p.Gly685Val	p.G685V	ENST00000264709	NM_175629.2	685	gGg/gTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134977915	134977915	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	300	578	0	ENST00000398015.3:c.2908C>A	p.His970Asn	p.H970N	ENST00000398015	NM_004441.4	970	Cat/Aat																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197692	66197692	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	165	301	0	ENST00000273854.3:c.3007G>T	p.Glu1003Ter	p.E1003*	ENST00000273854	NM_004439.5	1003	Gag/Tag																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149457755	149457755	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	154	401	0	ENST00000286301.3:c.649G>T	p.Gly217Trp	p.G217W	ENST00000286301	NM_005211.3	217	Ggg/Tgg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729696	41729696	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	656	856	1	ENST00000242208.4:c.833G>T	p.Gly278Val	p.G278V	ENST00000242208	NM_002192.2	278	gGg/gTg																																																																															
SMO	6608	MSKCC	GRCh37	7	128845547	128845547	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	251	472	0	ENST00000249373.3:c.844C>A	p.Leu282Met	p.L282M	ENST00000249373	NM_005631.4	282	Ctg/Atg																																																																															
SMO	6608	MSKCC	GRCh37	7	128851482	128851482	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	269	509	0	ENST00000249373.3:c.1807T>A	p.Leu603Met	p.L603M	ENST00000249373	NM_005631.4	603	Ttg/Atg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389333	8389333	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	590	631	0	ENST00000356435.5:c.4285C>A	p.Gln1429Lys	p.Q1429K	ENST00000356435		1429	Cag/Aag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507336	8507336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	312	565	0	ENST00000356435.5:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000356435		548	Gaa/Aaa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528755	8528755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	405	407	0	ENST00000356435.5:c.377C>A	p.Pro126His	p.P126H	ENST00000356435		126	cCt/cAt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636758	8636758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	209	334	0	ENST00000356435.5:c.151C>T	p.Pro51Ser	p.P51S	ENST00000356435		51	Cca/Tca																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882067	36882067	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	229	522	0	ENST00000358127.4:c.946C>A	p.Pro316Thr	p.P316T	ENST00000358127	NM_001280556.1	316	Cct/Act																																																																															
TET1	80312	MSKCC	GRCh37	10	70332949	70332949	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	337	634	0	ENST00000373644.4:c.854C>G	p.Ser285Cys	p.S285C	ENST00000373644	NM_030625.2	285	tCt/tGt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127755	64127755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	133	267	0	ENST00000334205.4:c.248G>T	p.Arg83Leu	p.R83L	ENST00000334205	NM_003942.2	83	cGc/cTc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861159	57861159	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	305	704	0	ENST00000228682.2:c.956A>G	p.Lys319Arg	p.K319R	ENST00000228682	NM_005269.2	319	aAg/aGg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436473	110436473	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	233	497	0	ENST00000375856.3:c.1928C>G	p.Ser643Cys	p.S643C	ENST00000375856	NM_003749.2	643	tCc/tGc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678622	88678622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			28	170	174	0	ENST00000360948.2:c.914C>A	p.Pro305Gln	p.P305Q	ENST00000360948	NM_001012338.2	305	cCa/cAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992463	72992463	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	331	852	2	ENST00000268489.5:c.1582C>T	p.Gln528Ter	p.Q528*	ENST00000268489	NM_006885.3	528	Caa/Taa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89857888	89857888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	167	380	1	ENST00000389301.3:c.1282G>T	p.Val428Phe	p.V428F	ENST00000389301	NM_000135.2	428	Gtc/Ttc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47679227	47679227	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	818	358	0	ENST00000347630.2:c.980A>T	p.Tyr327Phe	p.Y327F	ENST00000347630	NM_001007230.1	327	tAt/tTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602520	10602520	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	328	345	0	ENST00000171111.5:c.1058T>C	p.Leu353Pro	p.L353P	ENST00000171111	NM_203500.1	353	cTc/cCc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105646	11105646	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			74	436	340	0	ENST00000344626.4:c.1562G>T	p.Arg521Leu	p.R521L	ENST00000344626	NM_003072.3	521	cGg/cTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152033	11152033	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	354	269	1	ENST00000344626.4:c.4221G>T	p.Lys1407Asn	p.K1407N	ENST00000344626	NM_003072.3	1407	aaG/aaT																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546751	9546751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	285	285	0	ENST00000353224.5:c.1271C>A	p.Pro424His	p.P424H	ENST00000353224	NM_177990.2	424	cCc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076889	41076889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	259	535	1	ENST00000373198.4:c.1531G>A	p.Glu511Lys	p.E511K	ENST00000373198	NM_133170.3	511	Gag/Aag																																																																															
NF2	4771	MSKCC	GRCh37	22	30000025	30000025	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	215	504	0	ENST00000338641.4:c.38C>A	p.Ser13Tyr	p.S13Y	ENST00000338641	NM_000268.3	13	tCt/tAt																																																																															
EP300	2033	MSKCC	GRCh37	22	41537133	41537133	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	240	423	0	ENST00000263253.7:c.1960A>T	p.Lys654Ter	p.K654*	ENST00000263253	NM_001429.3	654	Aag/Tag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918349	44918349	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	242	424	0	ENST00000377967.4:c.974G>T	p.Gly325Val	p.G325V	ENST00000377967	NM_021140.2	325	gGt/gTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006764	47006764	+	5_prime_UTR_variant	5'UTR	SNP	C	C	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	816	545	1	ENST00000329236.7:c.-117C>A		p.*39*	ENST00000329236	NM_001204466.1																																																																																	
RBM10	8241	MSKCC	GRCh37	X	47035965	47035965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1358	300	648	0	ENST00000329236.7:c.412G>A	p.Glu138Lys	p.E138K	ENST00000329236	NM_001204466.1	138	Gag/Aag																																																																															
ATRX	546	MSKCC	GRCh37	X	76875944	76875944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	397	628	0	ENST00000373344.5:c.5191G>T	p.Val1731Phe	p.V1731F	ENST00000373344	NM_000489.3	1731	Gtt/Ttt																																																																															
ATRX	546	MSKCC	GRCh37	X	76937284	76937284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	292	474	0	ENST00000373344.5:c.3464C>T	p.Ser1155Leu	p.S1155L	ENST00000373344	NM_000489.3	1155	tCa/tTa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535432	66535432	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	92	219	0	ENST00000273854.3:c.29del	p.Gly10AspfsTer52	p.G10Dfs*52	ENST00000273854	NM_004439.5	10	gGa/ga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280094	66280095	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	232	406	0	ENST00000273854.3:c.1594_1595delinsAA	p.Pro532Lys	p.P532K	ENST00000273854	NM_004439.5	532	CCa/AAa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137785	64137785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	160	774	2	ENST00000334205.4:c.1886G>A	p.Arg629His	p.R629H	ENST00000334205	NM_003942.2	629	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	378	711	0	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735579	204735579	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	91	379	0	ENST00000302823.3:c.380A>G	p.Tyr127Cys	p.Y127C	ENST00000302823	NM_005214.4	127	tAc/tGc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16012207	16012207	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	62	418	0	ENST00000268712.3:c.2075A>T	p.Glu692Val	p.E692V	ENST00000268712	NM_006311.3	692	gAa/gTa																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66525112	66525112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	127	287	0	ENST00000358598.2:c.871G>T	p.Glu291Ter	p.E291*	ENST00000358598	NM_212471.2	291	Gag/Tag																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42843850	42843850	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	114	607	0	ENST00000398585.3:c.1069A>C	p.Met357Leu	p.M357L	ENST00000398585	NM_001135099.1	357	Atg/Ctg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971067	21971074	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCACCA	CAGCACCA	-			P-0012241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	145	362	0	ENST00000304494.5:c.284_291del	p.Val95AlafsTer22	p.V95Afs*22	ENST00000304494	NM_000077.4	95	gTGGTGCTG/g																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098943	178098948	+	inframe_deletion	In_Frame_Del	DEL	TCGACT	TCGACT	-			P-0012241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	42	489	0	ENST00000397062.3:c.97_102del	p.Ser33_Arg34del	p.S33_R34del	ENST00000397062	NM_006164.4	33	AGTCGA/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	334	660	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	47	249	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	247	850	0	ENST00000269305.4:c.794T>C	p.Leu265Pro	p.L265P	ENST00000269305	NM_001126112.2	265	cTg/cCg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971026	21971026	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	126	360	0	ENST00000304494.5:c.332del	p.Gly111AlafsTer35	p.G111Afs*35	ENST00000304494	NM_000077.4	111	gGc/gc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10248677	10248677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	47	452	1	ENST00000340748.4:c.4076C>T	p.Ser1359Leu	p.S1359L	ENST00000340748		1359	tCg/tTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41513437	41513437	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	93	766	0	ENST00000263253.7:c.341G>C	p.Gly114Ala	p.G114A	ENST00000263253	NM_001429.3	114	gGa/gCa																																																																															
MED12	9968	MSKCC	GRCh37	X	70352735	70352735	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1100	275	1139	0	ENST00000374080.3:c.4456C>G	p.Leu1486Val	p.L1486V	ENST00000374080		1486	Cta/Gta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	191	524	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508361	106508361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	32	185	0	ENST00000359195.3:c.355C>A	p.Leu119Met	p.L119M	ENST00000359195	NM_002649.2	119	Ctg/Atg																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2494306	2494306	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	231	607	1	ENST00000355716.4:c.697G>A	p.Asp233Asn	p.D233N	ENST00000355716	NM_003820.2	233	Gat/Aat																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518496	204518496	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	56	426	0	ENST00000367182.3:c.1159G>C	p.Asp387His	p.D387H	ENST00000367182	NM_001278516.1	387	Gat/Cat																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518731	204518731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	59	411	0	ENST00000367182.3:c.1394G>A	p.Arg465Lys	p.R465K	ENST00000367182	NM_001278516.1	465	aGa/aAa																																																																															
REL	5966	MSKCC	GRCh37	2	61149399	61149399	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	230	563	0	ENST00000295025.8:c.1589C>A	p.Pro530Gln	p.P530Q	ENST00000295025	NM_002908.2	530	cCa/cAa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134977861	134977861	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	99	472	1	ENST00000398015.3:c.2854C>A	p.Leu952Met	p.L952M	ENST00000398015	NM_004441.4	952	Ctg/Atg																																																																															
TP63	8626	MSKCC	GRCh37	3	189608590	189608590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	173	605	0	ENST00000264731.3:c.1665G>T	p.Arg555Ser	p.R555S	ENST00000264731	NM_003722.4	555	agG/agT																																																																															
TP63	8626	MSKCC	GRCh37	3	189612133	189612133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	134	574	1	ENST00000264731.3:c.1885G>T	p.Gly629Cys	p.G629C	ENST00000264731	NM_003722.4	629	Ggc/Tgc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141031	55141031	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	109	511	0	ENST00000257290.5:c.1677G>T	p.Trp559Cys	p.W559C	ENST00000257290	NM_006206.4	559	tgG/tgT																																																																															
KDR	3791	MSKCC	GRCh37	4	55968064	55968064	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	69	347	1	ENST00000263923.4:c.2266G>A	p.Gly756Ser	p.G756S	ENST00000263923	NM_002253.2	756	Ggt/Agt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230794	66230794	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1079	65	575	0	ENST00000273854.3:c.2177G>T	p.Ser726Ile	p.S726I	ENST00000273854	NM_004439.5	726	aGt/aTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540407	187540407	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	71	325	0	ENST00000441802.2:c.7333G>C	p.Gly2445Arg	p.G2445R	ENST00000441802	NM_005245.3	2445	Ggg/Cgg																																																																															
APC	324	MSKCC	GRCh37	5	112177784	112177784	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	98	315	0	ENST00000257430.4:c.6493C>G	p.Pro2165Ala	p.P2165A	ENST00000257430	NM_000038.5	2165	Cca/Gca																																																																															
NSD1	64324	MSKCC	GRCh37	5	176694713	176694713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	63	687	0	ENST00000439151.2:c.5297G>A	p.Arg1766Gln	p.R1766Q	ENST00000439151	NM_022455.4	1766	cGa/cAa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169072	32169072	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	167	604	0	ENST00000375023.3:c.3961C>A	p.Leu1321Met	p.L1321M	ENST00000375023	NM_004557.3	1321	Ctg/Atg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528747	157528747	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	92	516	0	ENST00000346085.5:c.6472A>T	p.Asn2158Tyr	p.N2158Y	ENST00000346085	NM_020732.3	2158	Aac/Tac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518366	8518366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	78	267	1	ENST00000356435.5:c.1025C>T	p.Thr342Met	p.T342M	ENST00000356435		342	aCg/aTg																																																																															
PAX5	5079	MSKCC	GRCh37	9	36923375	36923375	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	209	532	0	ENST00000358127.4:c.887C>G	p.Pro296Arg	p.P296R	ENST00000358127	NM_001280556.1	296	cCg/cGg																																																																															
EED	8726	MSKCC	GRCh37	11	85963262	85963262	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	138	482	0	ENST00000263360.6:c.340G>T	p.Ala114Ser	p.A114S	ENST00000263360	NM_003797.3	114	Gca/Tca																																																																															
BIRC3	330	MSKCC	GRCh37	11	102201946	102201946	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1234	137	785	0	ENST00000263464.3:c.1298A>T	p.Glu433Val	p.E433V	ENST00000263464	NM_001165.4	433	gAa/gTa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472427	88472427	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	135	523	0	ENST00000360948.2:c.2128T>C	p.Tyr710His	p.Y710H	ENST00000360948	NM_001012338.2	710	Tac/Cac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900443	3900443	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1165	83	613	0	ENST00000262367.5:c.653G>C	p.Arg218Thr	p.R218T	ENST00000262367	NM_004380.2	218	aGa/aCa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900455	3900455	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	87	649	0	ENST00000262367.5:c.641G>T	p.Gly214Val	p.G214V	ENST00000262367	NM_004380.2	214	gGg/gTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969851	81969851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1222	309	757	1	ENST00000359376.3:c.2920C>T	p.Leu974Phe	p.L974F	ENST00000359376	NM_002661.3	974	Ctc/Ttc																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805924	46805924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	151	676	0	ENST00000290295.7:c.32G>A	p.Gly11Glu	p.G11E	ENST00000290295	NM_006361.5	11	gGa/gAa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47699321	47699321	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	96	541	0	ENST00000347630.2:c.187G>C	p.Asp63His	p.D63H	ENST00000347630	NM_001007230.1	63	Gat/Cat																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245051	53245051	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1144	251	832	1	ENST00000375401.3:c.889G>T	p.Glu297Ter	p.E297*	ENST00000375401	NM_004187.3	297	Gag/Tag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245127	53245127	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	225	735	0	ENST00000375401.3:c.813del	p.Val272TrpfsTer2	p.V272Wfs*2	ENST00000375401	NM_004187.3	271	gtA/gt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971154	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	64	230	0	ENST00000304494.5:c.204_205delinsTT	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	68	gcGGag/gcTTag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602487	10602488	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	232	444	0	ENST00000171111.5:c.1090_1091delinsTT	p.Gly364Phe	p.G364F	ENST00000171111	NM_203500.1	364	GGc/TTc																																																																															
SMO	6608	MSKCC	GRCh37	7	128845597	128845598	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1103	310	444	0	ENST00000249373.3:c.894_895delinsAT	p.Asp298_Gly299delinsGluCys	p.D298_G299delinsEC	ENST00000249373	NM_005631.4	298	gaTGgc/gaATgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0012595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	178	265	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	74	235	0				ENST00000310581	NM_198253.2																																																																																	
RBM10	8241	MSKCC	GRCh37	X	47032529	47032529	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0012595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	165	419	0	ENST00000329236.7:c.205del	p.Arg69ValfsTer16	p.R69Vfs*16	ENST00000329236	NM_001204466.1	68	atC/at																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188865	32188865	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138205668		P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	140	588	1	ENST00000375023.3:c.689G>A	p.Arg230His	p.R230H	ENST00000375023	NM_004557.3	230	cGt/cAt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	46	614	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
KDR	3791	MSKCC	GRCh37	4	55980345	55980345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1172	66	826	0	ENST00000263923.4:c.746G>T	p.Arg249Ile	p.R249I	ENST00000263923	NM_002253.2	249	aGa/aTa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970966	21970966	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	86	558	0	ENST00000304494.5:c.392G>C	p.Arg131Pro	p.R131P	ENST00000304494	NM_000077.4	131	cGc/cCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	200	578	0	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458630	120458630	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	90	490	0	ENST00000256646.2:c.6715G>C	p.Gly2239Arg	p.G2239R	ENST00000256646	NM_024408.3	2239	Gga/Cga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120510838	120510838	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	61	436	0	ENST00000256646.2:c.1126G>C	p.Asp376His	p.D376H	ENST00000256646	NM_024408.3	376	Gat/Cat																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612754	228612754	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1382	286	1238	1	ENST00000366696.1:c.273G>T	p.Met91Ile	p.M91I	ENST00000366696	NM_003493.2	91	atG/atT																																																																															
BARD1	580	MSKCC	GRCh37	2	215645996	215645996	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	151	638	2	ENST00000260947.4:c.602G>T	p.Arg201Ile	p.R201I	ENST00000260947	NM_000465.2	201	aGa/aTa																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204752	128204752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1363	155	1005	2	ENST00000341105.2:c.689G>T	p.Arg230Leu	p.R230L	ENST00000341105	NM_032638.4	230	cGc/cTc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880952	134880952	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	90	605	1	ENST00000398015.3:c.1515G>T	p.Gln505His	p.Q505H	ENST00000398015	NM_004441.4	505	caG/caT																																																																															
TERT	7015	MSKCC	GRCh37	5	1295322	1295322	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	108	502	0				ENST00000310581	NM_198253.2																																																																																	
PLK2	10769	MSKCC	GRCh37	5	57754599	57754599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	91	677	0	ENST00000274289.3:c.448G>A	p.Glu150Lys	p.E150K	ENST00000274289	NM_006622.3	150	Gag/Aag																																																																															
PARK2	5071	MSKCC	GRCh37	6	162475134	162475134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1040	109	792	0	ENST00000366898.1:c.607G>T	p.Gly203Trp	p.G203W	ENST00000366898	NM_004562.2	203	Ggg/Tgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878107	151878107	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	125	508	0	ENST00000262189.6:c.6838G>C	p.Gly2280Arg	p.G2280R	ENST00000262189	NM_170606.2	2280	Gga/Cga																																																																															
PAX5	5079	MSKCC	GRCh37	9	36840597	36840597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	81	606	0	ENST00000358127.4:c.1136C>A	p.Ala379Asp	p.A379D	ENST00000358127	NM_001280556.1	379	gCc/gAc																																																																															
WT1	7490	MSKCC	GRCh37	11	32450138	32450138	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	74	551	0	ENST00000332351.3:c.674C>A	p.Thr225Lys	p.T225K	ENST00000332351	NM_024426.4	225	aCg/aAg																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518619	69518619	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	44	260	0	ENST00000294312.3:c.26A>T	p.His9Leu	p.H9L	ENST00000294312	NM_005117.2	9	cAc/cTc																																																																															
PGR	5241	MSKCC	GRCh37	11	100922228	100922228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1156	150	941	0	ENST00000325455.5:c.2284G>T	p.Gly762Cys	p.G762C	ENST00000325455	NM_001202474.3	762	Ggt/Tgt																																																																															
PGR	5241	MSKCC	GRCh37	11	100999530	100999530	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1376	170	1000	1	ENST00000325455.5:c.272A>T	p.Glu91Val	p.E91V	ENST00000325455	NM_001202474.3	91	gAa/gTa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342614	118342614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	152	817	0	ENST00000534358.1:c.740G>A	p.Gly247Glu	p.G247E	ENST00000534358	NM_005933.3	247	gGa/gAa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109812	115109812	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	41	531	0	ENST00000257566.3:c.2066G>T	p.Gly689Val	p.G689V	ENST00000257566	NM_016569.3	689	gGc/gTc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112113	115112113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	202	712	0	ENST00000257566.3:c.1627C>A	p.Leu543Met	p.L543M	ENST00000257566	NM_016569.3	543	Ctg/Atg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120752	115120752	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	53	643	0	ENST00000257566.3:c.254C>A	p.Ala85Glu	p.A85E	ENST00000257566	NM_016569.3	85	gCg/gAg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28624281	28624281	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1072	105	815	1	ENST00000241453.7:c.693C>A	p.Cys231Ter	p.C231*	ENST00000241453	NM_004119.2	231	tgC/tgA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060976	38060976	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	70	347	0	ENST00000250448.2:c.1013G>T	p.Ser338Ile	p.S338I	ENST00000250448	NM_004496.3	338	aGt/aTt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95572537	95572537	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	101	387	0	ENST00000343455.3:c.2828A>C	p.His943Pro	p.H943P	ENST00000343455	NM_177438.2	943	cAt/cCt																																																																															
B2M	567	MSKCC	GRCh37	15	45007815	45007815	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	120	558	2	ENST00000558401.1:c.262A>T	p.Thr88Ser	p.T88S	ENST00000558401	NM_004048.2	88	Act/Tct																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476354	88476354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	270	679	0	ENST00000360948.2:c.1778C>T	p.Thr593Ile	p.T593I	ENST00000360948	NM_001012338.2	593	aCc/aTc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99442834	99442834	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	72	546	0	ENST00000268035.6:c.1231G>T	p.Glu411Ter	p.E411*	ENST00000268035	NM_000875.3	411	Gag/Tag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347721	347721	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	133	458	0	ENST00000262320.3:c.1784+1G>T		p.X595_splice	ENST00000262320	NM_003502.3	595																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31016052	31016052	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1302	134	848	0	ENST00000375687.4:c.373+1G>T		p.X125_splice	ENST00000375687	NM_015338.5	125																																																																																
STK11	6794	MSKCC	GRCh37	19	1218442	1218442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	206	701	0	ENST00000326873.7:c.318del	p.His107ThrfsTer22	p.H107Tfs*22	ENST00000326873	NM_000455.4	106	cGg/cg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230669	46230670	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	229	788	0	ENST00000334344.6:c.918_919delinsCT	p.Leu306_Ala307delinsPheSer	p.L306_A307delinsFS	ENST00000334344	NM_152641.2	306	ttGGca/ttCTca																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120483272	120483273	+	synonymous_variant	Silent	DNP	CT	CT	GA			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	75	508	0	ENST00000256646.2:c.3088_3089delinsTC	p.Ser1030=	p.S1030=	ENST00000256646	NM_024408.3	1030	AGc/TCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	60	463	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	27	263	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268144	153268144	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs920052554		P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	145	604	1	ENST00000281708.4:c.664C>T	p.Arg222Ter	p.R222*	ENST00000281708	NM_033632.3	222	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	122	703	2	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	49	469	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
CUL3	8452	MSKCC	GRCh37	2	225379350	225379350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	77	595	1	ENST00000264414.4:c.518G>A	p.Arg173Gln	p.R173Q	ENST00000264414	NM_003590.4	173	cGg/cAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145644	11145644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	132	439	1	ENST00000344626.4:c.4006C>T	p.Arg1336Cys	p.R1336C	ENST00000344626	NM_003072.3	1336	Cgc/Tgc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133561	55133561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	112	580	0	ENST00000257290.5:c.865G>A	p.Glu289Lys	p.E289K	ENST00000257290	NM_006206.4	289	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	79	447	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55220275	55220275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1076	159	639	1	ENST00000275493.2:c.665G>A	p.Arg222His	p.R222H	ENST00000275493	NM_005228.3	222	cGc/cAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139397768	139397768	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	91	411	0	ENST00000277541.6:c.5033T>C	p.Leu1678Pro	p.L1678P	ENST00000277541	NM_017617.3	1678	cTg/cCg																																																																															
ATM	472	MSKCC	GRCh37	11	108098419	108098419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	53	285	0	ENST00000278616.4:c.68G>A	p.Arg23Gln	p.R23Q	ENST00000278616	NM_000051.3	23	cGa/cAa																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111921737	111921737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	131	643	0	ENST00000393256.3:c.526G>A	p.Glu176Lys	p.E176K	ENST00000393256	NM_006538.4	176	Gaa/Aaa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	150	430	1	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439834	52439834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	177	614	0	ENST00000460680.1:c.878C>T	p.Pro293Leu	p.P293L	ENST00000460680	NM_004656.3	293	cCg/cTg																																																																															
RHOA	387	MSKCC	GRCh37	3	49412922	49412922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	209	867	0	ENST00000418115.1:c.101A>G	p.Tyr34Cys	p.Y34C	ENST00000418115	NM_001664.2	34	tAt/tGt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11300570	11300570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	165	650	1	ENST00000361445.4:c.1576C>T	p.Arg526Cys	p.R526C	ENST00000361445	NM_004958.3	526	Cgt/Tgt																																																																															
RHOA	387	MSKCC	GRCh37	3	49397700	49397700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	164	721	1	ENST00000418115.1:c.524C>T	p.Thr175Met	p.T175M	ENST00000418115	NM_001664.2	175	aCg/aTg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185198193	185198193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	155	613	1	ENST00000265026.3:c.2675C>T	p.Thr892Met	p.T892M	ENST00000265026	NM_004721.4	892	aCg/aTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411276	63411276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	200	403	0	ENST00000330258.3:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000330258	NM_152424.3	631	Cga/Tga																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121438954	121438954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	219	879	1	ENST00000257555.6:c.1855G>A	p.Glu619Lys	p.E619K	ENST00000257555		619	Gag/Aag																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264985	46264985	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1040	217	1140	0	ENST00000371998.3:c.1860del	p.Lys620AsnfsTer18	p.K620Nfs*18	ENST00000371998		619	Aaa/aa																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321351	1321351	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763354527		P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	164	650	1	ENST00000381566.1:c.404C>T	p.Thr135Met	p.T135M	ENST00000381566		135	aCg/aTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274018	10274018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	206	676	1	ENST00000330684.3:c.251C>T	p.Thr84Met	p.T84M	ENST00000330684	NM_001134407.1	84	aCg/aTg																																																																															
RAB35	11021	MSKCC	GRCh37	12	120541651	120541651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1380	254	1019	2	ENST00000229340.5:c.206G>A	p.Arg69His	p.R69H	ENST00000229340	NM_006861.6	69	cGc/cAc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468186	120468186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	122	450	0	ENST00000256646.2:c.4253C>T	p.Pro1418Leu	p.P1418L	ENST00000256646	NM_024408.3	1418	cCc/cTc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148525838	148525838	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	79	464	0	ENST00000320356.2:c.619C>T	p.Arg207Ter	p.R207*	ENST00000320356	NM_004456.4	207	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11317043	11317043	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	171	683	0	ENST00000361445.4:c.451C>T	p.Arg151Ter	p.R151*	ENST00000361445	NM_004958.3	151	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056142	27056142	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	109	359	0	ENST00000324856.7:c.1138C>A	p.Pro380Thr	p.P380T	ENST00000324856	NM_006015.4	380	Cca/Aca																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46736387	46736387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	158	590	3	ENST00000371975.4:c.1099G>A	p.Ala367Thr	p.A367T	ENST00000371975	NM_003579.3	367	Gct/Act																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330624	65330624	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	147	605	0	ENST00000342505.4:c.1022T>G	p.Leu341Arg	p.L341R	ENST00000342505	NM_002227.2	341	cTg/cGg																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166512	118166512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	142	553	0	ENST00000369448.3:c.1022T>C	p.Leu341Pro	p.L341P	ENST00000369448	NM_017709.3	341	cTg/cCg																																																																															
MDM4	4194	MSKCC	GRCh37	1	204512028	204512028	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	65	477	0	ENST00000367182.3:c.628T>C	p.Tyr210His	p.Y210H	ENST00000367182	NM_001278516.1	210	Tat/Cat																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206649643	206649643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	114	473	0	ENST00000367120.3:c.478G>A	p.Ala160Thr	p.A160T	ENST00000367120	NM_014002.3	160	Gct/Act																																																																															
ACVR1	90	MSKCC	GRCh37	2	158594066	158594066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	178	863	1	ENST00000263640.3:c.1507G>A	p.Asp503Asn	p.D503N	ENST00000263640	NM_001105.4	503	Gac/Aac																																																																															
CASP8	841	MSKCC	GRCh37	2	202131422	202131422	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	103	495	0	ENST00000358485.4:c.390A>T	p.Arg130Ser	p.R130S	ENST00000358485	NM_001080125.1	130	agA/agT																																																																															
CASP8	841	MSKCC	GRCh37	2	202151298	202151298	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	182	713	0	ENST00000358485.4:c.1598T>G	p.Leu533Arg	p.L533R	ENST00000358485	NM_001080125.1	533	cTt/cGt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251788	212251788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	43	438	0	ENST00000342788.4:c.3271G>A	p.Ala1091Thr	p.A1091T	ENST00000342788	NM_005235.2	1091	Gct/Act																																																																															
CUL3	8452	MSKCC	GRCh37	2	225339038	225339038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	123	631	1	ENST00000264414.4:c.2231G>A	p.Arg744His	p.R744H	ENST00000264414	NM_003590.4	744	cGt/cAt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225346713	225346713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	103	599	0	ENST00000264414.4:c.1925G>A	p.Arg642Gln	p.R642Q	ENST00000264414	NM_003590.4	642	cGg/cAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278079	41278079	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	109	700	0	ENST00000349496.5:c.1955C>T	p.Ala652Val	p.A652V	ENST00000349496	NM_001904.3	652	gCg/gTg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928015	49928015	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1259	269	953	0	ENST00000296474.3:c.3713A>G	p.Tyr1238Cys	p.Y1238C	ENST00000296474	NM_002447.2	1238	tAc/tGc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181825	56181825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	127	532	0	ENST00000399503.3:c.4049C>T	p.Thr1350Ile	p.T1350I	ENST00000399503	NM_005921.1	1350	aCt/aTt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753945	57753945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	63	565	0	ENST00000274289.3:c.679G>A	p.Ala227Thr	p.A227T	ENST00000274289	NM_006622.3	227	Gca/Aca																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520205	176520205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	135	545	0	ENST00000292408.4:c.1124C>T	p.Ser375Leu	p.S375L	ENST00000292408	NM_213647.1	375	tCg/tTg																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225591	26225591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1757	319	1395	1	ENST00000360408.1:c.209G>A	p.Arg70His	p.R70H	ENST00000360408	NM_003532.2	70	cGc/cAc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29913029	29913029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	179	634	0	ENST00000376809.5:c.1064G>A	p.Gly355Asp	p.G355D	ENST00000376809	NM_002116.7	355	gGc/gAc																																																																															
FYN	2534	MSKCC	GRCh37	6	112025267	112025267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	194	942	1	ENST00000368678.4:c.482G>A	p.Arg161Gln	p.R161Q	ENST00000368678		161	cGa/cAa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117725529	117725529	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	103	575	0	ENST00000368508.3:c.352C>T	p.Arg118Ter	p.R118*	ENST00000368508	NM_002944.2	118	Cga/Tga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157517428	157517428	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	134	516	0	ENST00000346085.5:c.3992A>G	p.Tyr1331Cys	p.Y1331C	ENST00000346085	NM_020732.3	1331	tAt/tGt																																																																															
HGF	3082	MSKCC	GRCh37	7	81339463	81339463	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	175	636	1	ENST00000222390.5:c.1541G>A	p.Arg514Lys	p.R514K	ENST00000222390	NM_000601.4	514	aGa/aAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879276	151879276	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146455116		P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	246	543	0	ENST00000262189.6:c.5669G>A	p.Arg1890Gln	p.R1890Q	ENST00000262189	NM_170606.2	1890	cGa/cAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891099	151891099	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	73	392	0	ENST00000262189.6:c.4655A>G	p.Asn1552Ser	p.N1552S	ENST00000262189	NM_170606.2	1552	aAt/aGt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64128672	64128672	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	181	604	0	ENST00000334205.4:c.529C>A	p.Leu177Ile	p.L177I	ENST00000334205	NM_003942.2	177	Ctc/Atc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129418	64129418	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	147	609	1	ENST00000334205.4:c.850C>T	p.Arg284Ter	p.R284*	ENST00000334205	NM_003942.2	284	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416066	49416066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1187	241	867	0	ENST00000301067.7:c.16409C>A	p.Ala5470Asp	p.A5470D	ENST00000301067	NM_003482.3	5470	gCc/gAc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481841	56481841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	195	646	0	ENST00000267101.3:c.769C>T	p.Pro257Ser	p.P257S	ENST00000267101	NM_001982.3	257	Cct/Tct																																																																															
POLE	5426	MSKCC	GRCh37	12	133233742	133233742	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	191	652	2	ENST00000320574.5:c.3562A>G	p.Thr1188Ala	p.T1188A	ENST00000320574	NM_006231.2	1188	Acc/Gcc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134490	41134490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1489	294	1210	0	ENST00000379561.5:c.1138C>A	p.Leu380Ile	p.L380I	ENST00000379561	NM_002015.3	380	Ctt/Att																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435297	110435297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	60	156	0	ENST00000375856.3:c.3104C>T	p.Pro1035Leu	p.P1035L	ENST00000375856	NM_003749.2	1035	cCg/cTg																																																																															
BLM	641	MSKCC	GRCh37	15	91333922	91333922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	107	568	1	ENST00000355112.3:c.2867C>T	p.Pro956Leu	p.P956L	ENST00000355112	NM_000057.2	956	cCg/cTg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	364637	364637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	149	593	0	ENST00000262320.3:c.925G>A	p.Gly309Ser	p.G309S	ENST00000262320	NM_003502.3	309	Ggc/Agc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641058	23641058	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45464991		P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	169	646	0	ENST00000261584.4:c.2417C>T	p.Pro806Leu	p.P806L	ENST00000261584	NM_024675.3	806	cCg/cTg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612344	1612344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1349	198	918	1	ENST00000344749.5:c.1675G>A	p.Val559Met	p.V559M	ENST00000344749	NM_001136139.2	559	Gtg/Atg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101853	11101853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	157	565	0	ENST00000344626.4:c.1273C>T	p.Arg425Trp	p.R425W	ENST00000344626	NM_003072.3	425	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11118686	11118686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1141	205	766	0	ENST00000344626.4:c.2110C>T	p.Arg704Trp	p.R704W	ENST00000344626	NM_003072.3	704	Cgg/Tgg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15379801	15379801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	209	711	1	ENST00000263377.2:c.338G>A	p.Arg113His	p.R113H	ENST00000263377	NM_058243.2	113	cGc/cAc																																																																															
AXL	558	MSKCC	GRCh37	19	41725365	41725365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	86	600	0	ENST00000301178.4:c.68C>T	p.Ala23Val	p.A23V	ENST00000301178	NM_021913.4	23	gCg/gTg																																																																															
AXL	558	MSKCC	GRCh37	19	41762430	41762430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	230	696	1	ENST00000301178.4:c.2110C>T	p.Arg704Cys	p.R704C	ENST00000301178	NM_021913.4	704	Cgc/Tgc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52722957	52722957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	159	545	0	ENST00000322088.6:c.1142G>A	p.Arg381Gln	p.R381Q	ENST00000322088	NM_014225.5	381	cGg/cAg																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30253759	30253759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	146	721	2	ENST00000307677.4:c.695G>A	p.Arg232Gln	p.R232Q	ENST00000307677	NM_138578.1	232	cGg/cAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40727085	40727085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	156	581	3	ENST00000373198.4:c.3879G>A	p.Met1293Ile	p.M1293I	ENST00000373198	NM_133170.3	1293	atG/atA																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485136	57485136	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	62	420	0	ENST00000371085.3:c.970G>T	p.Ala324Ser	p.A324S	ENST00000371085	NM_000516.4	324	Gct/Tct																																																																															
EP300	2033	MSKCC	GRCh37	22	41574436	41574436	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	129	587	0	ENST00000263253.7:c.6721C>T	p.Gln2241Ter	p.Q2241*	ENST00000263253	NM_001429.3	2241	Cag/Tag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222450	53222450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	169	354	0	ENST00000375401.3:c.4382G>A	p.Arg1461Gln	p.R1461Q	ENST00000375401	NM_004187.3	1461	cGg/cAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412408	63412408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	39	538	2	ENST00000330258.3:c.759G>A	p.Met253Ile	p.M253I	ENST00000330258	NM_152424.3	253	atG/atA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412628	63412628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	144	342	2	ENST00000330258.3:c.539G>A	p.Arg180Gln	p.R180Q	ENST00000330258	NM_152424.3	180	cGg/cAg																																																																															
MED12	9968	MSKCC	GRCh37	X	70339230	70339230	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	238	420	0	ENST00000374080.3:c.107T>C	p.Leu36Pro	p.L36P	ENST00000374080		36	cTg/cCg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931825	39931826	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	179	354	0	ENST00000378444.4:c.2773dup	p.Cys925LeufsTer21	p.C925Lfs*21	ENST00000378444	NM_001123385.1	925	tgt/tTgt																																																																															
NF1	4763	MSKCC	GRCh37	17	29580009	29580010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	36	298	0	ENST00000358273.4:c.4170dup	p.Ser1391IlefsTer4	p.S1391Ifs*4	ENST00000358273	NM_001042492.2	1388	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	380	381	0	ENST00000269305.4:c.532C>G	p.His178Asp	p.H178D	ENST00000269305	NM_001126112.2	178	Cac/Gac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	865	575	1	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0013260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	743	536	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793298	242793298	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0013260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	262	573	0	ENST00000334409.5:c.779C>G	p.Ser260Ter	p.S260*	ENST00000334409	NM_005018.2	260	tCa/tGa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535408	66535408	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	151	177	2	ENST00000273854.3:c.53G>T	p.Gly18Val	p.G18V	ENST00000273854	NM_004439.5	18	gGc/gTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295226	1295226	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0013260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	292	198	0				ENST00000310581	NM_198253.2																																																																																	
NSD1	64324	MSKCC	GRCh37	5	176562585	176562585	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	219	331	0	ENST00000439151.2:c.481G>T	p.Asp161Tyr	p.D161Y	ENST00000439151	NM_022455.4	161	Gat/Tat																																																																															
MED12	9968	MSKCC	GRCh37	X	70342647	70342647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1303	420	818	2	ENST00000374080.3:c.1408C>T	p.Arg470Cys	p.R470C	ENST00000374080		470	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013522-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			769	45	532	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0013522-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			422	25	294	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	29	314	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	63	689	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478851	56478851	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1155	109	1313	0	ENST00000267101.3:c.307C>G	p.Arg103Gly	p.R103G	ENST00000267101	NM_001982.3	103	Cgc/Ggc																																																																															
IGF2	3481	MSKCC	GRCh37	11	2156625	2156625	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1111	85	947	0	ENST00000434045.2:c.297C>A	p.Phe99Leu	p.F99L	ENST00000434045	NM_001127598.1	99	ttC/ttA																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742837	17742837	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	72	636	0	ENST00000250003.3:c.745C>A	p.Leu249Ile	p.L249I	ENST00000250003	NM_002478.4	249	Cta/Ata																																																																															
EED	8726	MSKCC	GRCh37	11	85975293	85975293	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	61	847	0	ENST00000263360.6:c.714A>C	p.Glu238Asp	p.E238D	ENST00000263360	NM_003797.3	238	gaA/gaC																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94192683	94192683	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	69	933	1	ENST00000323929.3:c.1391A>T	p.Lys464Met	p.K464M	ENST00000323929	NM_005591.3	464	aAg/aTg																																																																															
ATM	472	MSKCC	GRCh37	11	108139278	108139278	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	63	779	0	ENST00000278616.4:c.2780T>C	p.Leu927Ser	p.L927S	ENST00000278616	NM_000051.3	927	tTg/tCg																																																																															
MGA	23269	MSKCC	GRCh37	15	42019597	42019597	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	109	1190	0	ENST00000219905.7:c.3650A>T	p.Asn1217Ile	p.N1217I	ENST00000219905	NM_001164273.1	1217	aAt/aTt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23614787	23614787	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	50	577	0	ENST00000261584.4:c.3554A>T	p.Tyr1185Phe	p.Y1185F	ENST00000261584	NM_024675.3	1185	tAt/tTt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89828379	89828379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	129	862	1	ENST00000389301.3:c.2830G>A	p.Asp944Asn	p.D944N	ENST00000389301	NM_000135.2	944	Gat/Aat																																																																															
NF1	4763	MSKCC	GRCh37	17	29528427	29528427	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	63	457	4	ENST00000358273.4:c.1186-2A>T		p.X396_splice	ENST00000358273	NM_001042492.2	396																																																																																
NF1	4763	MSKCC	GRCh37	17	29587386	29587386	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	92	663	1	ENST00000358273.4:c.4431-1G>T		p.X1477_splice	ENST00000358273	NM_001042492.2	1477																																																																																
NF1	4763	MSKCC	GRCh37	17	29657435	29657435	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs146523293		P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	61	764	0	ENST00000358273.4:c.5731A>G	p.Ile1911Val	p.I1911V	ENST00000358273	NM_001042492.2	1911	Att/Gtt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40486030	40486030	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1258	144	1191	0	ENST00000264657.5:c.835C>G	p.Gln279Glu	p.Q279E	ENST00000264657	NM_139276.2	279	Caa/Gaa																																																																															
ALK	238	MSKCC	GRCh37	2	29551342	29551342	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	46	724	0	ENST00000389048.3:c.1288T>C	p.Ser430Pro	p.S430P	ENST00000389048	NM_004304.4	430	Tcc/Ccc																																																																															
NF2	4771	MSKCC	GRCh37	22	30035098	30035098	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	175	906	1	ENST00000338641.4:c.260C>G	p.Ser87Ter	p.S87*	ENST00000338641	NM_000268.3	87	tCa/tGa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259251	89259251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	72	785	2	ENST00000336596.2:c.395G>T	p.Gly132Val	p.G132V	ENST00000336596	NM_005233.5	132	gGg/gTg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480395	89480396	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AT			P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	63	880	7	ENST00000336596.2:c.2232_2233delinsAT	p.His744_Arg745delinsGlnTer	p.H744_R745delinsQ*	ENST00000336596	NM_005233.5	744	caCCga/caATga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539390	187539390	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	69	880	1	ENST00000441802.2:c.8350C>A	p.Gln2784Lys	p.Q2784K	ENST00000441802	NM_005245.3	2784	Caa/Aaa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672813	86672813	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	48	602	0	ENST00000274376.6:c.2300C>A	p.Ser767Ter	p.S767*	ENST00000274376	NM_002890.2	767	tCg/tAg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163889	152163889	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	62	739	0	ENST00000206249.3:c.610G>T	p.Gly204Cys	p.G204C	ENST00000206249	NM_000125.3	204	Ggc/Tgc																																																																															
HGF	3082	MSKCC	GRCh37	7	81339560	81339560	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	78	764	0	ENST00000222390.5:c.1445-1G>T		p.X482_splice	ENST00000222390	NM_000601.4	482																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8485843	8485843	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	49	904	0	ENST00000356435.5:c.2974G>T	p.Val992Leu	p.V992L	ENST00000356435		992	Gta/Tta																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518388	8518388	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	32	307	0	ENST00000356435.5:c.1003A>G	p.Thr335Ala	p.T335A	ENST00000356435		335	Aca/Gca																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039906	47039906	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	49	525	0	ENST00000329236.7:c.1014+1G>T		p.X338_splice	ENST00000329236	NM_001204466.1	338																																																																																
GATA1	2623	MSKCC	GRCh37	X	48649734	48649734	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	94	1058	1	ENST00000376670.3:c.218C>A	p.Pro73Gln	p.P73Q	ENST00000376670	NM_002049.3	73	cCa/cAa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562324	21562324	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	34	349	0	ENST00000382592.4:c.1595A>T	p.Asp532Val	p.D532V	ENST00000382592	NM_014572.2	532	gAc/gTc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554551	63554551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	64	400	0	ENST00000307078.5:c.188G>A	p.Gly63Glu	p.G63E	ENST00000307078	NM_004655.3	63	gGg/gAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11107001	11107001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	85	474	1	ENST00000344626.4:c.1706G>A	p.Arg569Gln	p.R569Q	ENST00000344626	NM_003072.3	569	cGg/cAg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267710	198267710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	124	418	1	ENST00000335508.6:c.1769G>T	p.Arg590Ile	p.R590I	ENST00000335508	NM_012433.2	590	aGa/aTa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	79	226	0				ENST00000310581	NM_198253.2																																																																																	
HIST1H3E	8353	MSKCC	GRCh37	6	26225608	26225608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1892	278	1207	1	ENST00000360408.1:c.226G>T	p.Ala76Ser	p.A76S	ENST00000360408	NM_003532.2	76	Gct/Tct																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486028	8486028	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	201	638	1	ENST00000356435.5:c.2789C>A	p.Thr930Asn	p.T930N	ENST00000356435		930	aCc/aAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045190	47045190	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0013653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	166	518	1	ENST00000329236.7:c.2196+1G>T		p.X732_splice	ENST00000329236	NM_001204466.1	732																																																																																
KDR	3791	MSKCC	GRCh37	4	55961109	55961110	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0013653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	147	507	0	ENST00000263923.4:c.2830_2831delinsA	p.Arg944AsnfsTer16	p.R944Nfs*16	ENST00000263923	NM_002253.2	944	CGa/Aa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520017		P-0013716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	317	479	1	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0013716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	207	329	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168613	32168613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	125	382	0	ENST00000375023.3:c.4310G>A	p.Gly1437Glu	p.G1437E	ENST00000375023	NM_004557.3	1437	gGg/gAg																																																																															
ID3	3399	MSKCC	GRCh37	1	23885884	23885884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	427	674	0	ENST00000374561.5:c.34G>A	p.Glu12Lys	p.E12K	ENST00000374561	NM_002167.4	12	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094347	27094347	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	77	380	0	ENST00000324856.7:c.3055G>C	p.Glu1019Gln	p.E1019Q	ENST00000324856	NM_006015.4	1019	Gag/Cag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123624	11123624	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	327	441	4	ENST00000344626.4:c.2275-1G>T		p.X759_splice	ENST00000344626	NM_003072.3	759																																																																																
INPP4A	3631	MSKCC	GRCh37	2	99182505	99182505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	247	507	3	ENST00000074304.5:c.2308G>T	p.Val770Leu	p.V770L	ENST00000074304	NM_001134224.1	770	Gtg/Ttg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714472	40714472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	111	361	0	ENST00000373198.4:c.3925G>A	p.Glu1309Lys	p.E1309K	ENST00000373198	NM_133170.3	1309	Gag/Aag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390130	89390130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	165	503	0	ENST00000336596.2:c.879C>A	p.His293Gln	p.H293Q	ENST00000336596	NM_005233.5	293	caC/caA																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448529	89448529	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	152	552	0	ENST00000336596.2:c.1493G>T	p.Ser498Ile	p.S498I	ENST00000336596	NM_005233.5	498	aGc/aTc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920344	134920344	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	526	623	0	ENST00000398015.3:c.2159A>G	p.Gln720Arg	p.Q720R	ENST00000398015	NM_004441.4	720	cAg/cGg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845145	151845145	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	366	674	0	ENST00000262189.6:c.13867del	p.Leu4623TrpfsTer3	p.L4623Wfs*3	ENST00000262189	NM_170606.2	4623	Ctg/tg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636763	8636763	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	286	443	2	ENST00000356435.5:c.146del	p.Gly49GlufsTer23	p.G49Efs*23	ENST00000356435		49	gGa/ga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971023	21971023	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	166	203	0	ENST00000304494.5:c.335del	p.Arg112LeufsTer34	p.R112Lfs*34	ENST00000304494	NM_000077.4	112	cGt/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	259	535	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
AURKA	6790	MSKCC	GRCh37	20	54948558	54948558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	108	542	0	ENST00000312783.6:c.760C>T	p.His254Tyr	p.H254Y	ENST00000312783	NM_198436.1	254	Cat/Tat																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175826	176175826	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	19	221	0	ENST00000367669.3:c.289G>T	p.Ala97Ser	p.A97S	ENST00000367669	NM_022457.5	97	Gcc/Tcc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125514457	125514457	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	62	489	0	ENST00000428830.2:c.1152G>T	p.Leu384Phe	p.L384F	ENST00000428830	NM_001114121.2	384	ttG/ttT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	50	464	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag																																																																															
PARP1	142	MSKCC	GRCh37	1	226567800	226567800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	74	550	0	ENST00000366794.5:c.1366G>A	p.Glu456Lys	p.E456K	ENST00000366794	NM_001618.3	456	Gag/Aag																																																																															
KDR	3791	MSKCC	GRCh37	4	55953864	55953864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	91	582	0	ENST00000263923.4:c.3572G>A	p.Gly1191Glu	p.G1191E	ENST00000263923	NM_002253.2	1191	gGa/gAa																																																																															
STK40	83931	MSKCC	GRCh37	1	36808989	36808989	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	75	688	0	ENST00000373129.3:c.1065G>C	p.Met355Ile	p.M355I	ENST00000373129	NM_032017.1	355	atG/atC																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811604	102811604	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1197	163	808	0	ENST00000307046.8:c.580G>T	p.Gly194Ter	p.G194*	ENST00000307046	NM_001111285.1	194	Gga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134977861	134977861	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	129	510	0	ENST00000398015.3:c.2854C>A	p.Leu952Met	p.L952M	ENST00000398015	NM_004441.4	952	Ctg/Atg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781644	9781644	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	193	427	0	ENST00000377346.4:c.1954C>G	p.Arg652Gly	p.R652G	ENST00000377346	NM_005026.3	652	Cgc/Ggc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106741	27106741	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	235	560	0	ENST00000324856.7:c.6352G>C	p.Val2118Leu	p.V2118L	ENST00000324856	NM_006015.4	2118	Gtc/Ctc																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366634	40366634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	113	475	0	ENST00000397332.2:c.563G>T	p.Gly188Val	p.G188V	ENST00000397332	NM_001033082.2	188	gGg/gTg																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46597608	46597608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	50	576	0	ENST00000262741.5:c.17G>T	p.Trp6Leu	p.W6L	ENST00000262741	NM_003629.3	6	tGg/tTg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400952	72400952	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1017	608	889	1	ENST00000357731.5:c.219C>A	p.Asn73Lys	p.N73K	ENST00000357731	NM_173808.2	73	aaC/aaA																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462998	120462998	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	56	552	0	ENST00000256646.2:c.5333C>G	p.Ser1778Ter	p.S1778*	ENST00000256646	NM_024408.3	1778	tCa/tGa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464978	120464978	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	43	389	0	ENST00000256646.2:c.5094C>G	p.Ile1698Met	p.I1698M	ENST00000256646	NM_024408.3	1698	atC/atG																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120483192	120483192	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	89	419	0	ENST00000256646.2:c.3169G>T	p.Gly1057Trp	p.G1057W	ENST00000256646	NM_024408.3	1057	Ggg/Tgg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745946	162745946	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	50	605	0	ENST00000367921.3:c.2069T>C	p.Met690Thr	p.M690T	ENST00000367921	NM_006182.2	690	aTg/aCg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206651522	206651522	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	50	384	0	ENST00000367120.3:c.832G>T	p.Val278Leu	p.V278L	ENST00000367120	NM_014002.3	278	Gtg/Ttg																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612810	228612810	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1270	263	986	0	ENST00000366696.1:c.217C>G	p.Arg73Gly	p.R73G	ENST00000366696	NM_003493.2	73	Cgc/Ggc																																																																															
FH	2271	MSKCC	GRCh37	1	241671907	241671907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	93	454	0	ENST00000366560.3:c.734G>T	p.Gly245Val	p.G245V	ENST00000366560	NM_000143.3	245	gGg/gTg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243727087	243727087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	137	559	0	ENST00000263826.5:c.883G>A	p.Glu295Lys	p.E295K	ENST00000263826	NM_005465.4	295	Gaa/Aaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106098	8106098	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	57	329	0	ENST00000346208.3:c.918G>T	p.Arg306Ser	p.R306S	ENST00000346208		306	agG/agT																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111484	8111484	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	49	639	0	ENST00000346208.3:c.970A>G	p.Thr324Ala	p.T324A	ENST00000346208		324	Aca/Gca																																																																															
TET1	80312	MSKCC	GRCh37	10	70441155	70441155	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	130	438	0	ENST00000373644.4:c.4825-1G>T		p.X1609_splice	ENST00000373644	NM_030625.2	1609																																																																																
PTEN	5728	MSKCC	GRCh37	10	89711933	89711933	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	77	461	0	ENST00000371953.3:c.551A>G	p.Asn184Ser	p.N184S	ENST00000371953	NM_000314.4	184	aAt/aGt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741834	17741834	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	20	165	0	ENST00000250003.3:c.505G>C	p.Ala169Pro	p.A169P	ENST00000250003	NM_002478.4	169	Gcc/Ccc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742458	17742458	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	62	557	0	ENST00000250003.3:c.640A>T	p.Ser214Cys	p.S214C	ENST00000250003	NM_002478.4	214	Agc/Tgc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17743018	17743018	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	105	416	0	ENST00000250003.3:c.926C>G	p.Ala309Gly	p.A309G	ENST00000250003	NM_002478.4	309	gCg/gGg																																																																															
WT1	7490	MSKCC	GRCh37	11	32438071	32438071	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	133	522	0	ENST00000332351.3:c.966C>A	p.Ser322Arg	p.S322R	ENST00000332351	NM_024426.4	322	agC/agA																																																																															
PGR	5241	MSKCC	GRCh37	11	100912834	100912834	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	93	548	0	ENST00000325455.5:c.2489-1G>T		p.X830_splice	ENST00000325455	NM_001202474.3	830																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118374220	118374220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	80	651	0	ENST00000534358.1:c.7613C>T	p.Ser2538Phe	p.S2538F	ENST00000534358	NM_005933.3	2538	tCc/tTc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18715720	18715720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	149	567	0	ENST00000266497.5:c.3551C>G	p.Pro1184Arg	p.P1184R	ENST00000266497		1184	cCt/cGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427080	49427080	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	70	423	0	ENST00000301067.7:c.11408G>T	p.Gly3803Val	p.G3803V	ENST00000301067	NM_003482.3	3803	gGc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434883	49434883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	126	568	0	ENST00000301067.7:c.6670G>T	p.Gly2224Trp	p.G2224W	ENST00000301067	NM_003482.3	2224	Ggg/Tgg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864253	57864253	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	63	796	0	ENST00000228682.2:c.1730C>G	p.Ser577Cys	p.S577C	ENST00000228682	NM_005269.2	577	tCc/tGc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112919909	112919909	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	70	215	0	ENST00000351677.2:c.1124A>T	p.Tyr375Phe	p.Y375F	ENST00000351677	NM_002834.3	375	tAt/tTt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112490	115112490	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	74	439	0	ENST00000257566.3:c.1250del	p.Phe417SerfsTer215	p.F417Sfs*215	ENST00000257566	NM_016569.3	417	tTc/tc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431442	121431442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	122	508	0	ENST00000257555.6:c.646C>A	p.Gln216Lys	p.Q216K	ENST00000257555		216	Cag/Aag																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432181	121432181	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	29	457	0	ENST00000257555.6:c.928C>A	p.Pro310Thr	p.P310T	ENST00000257555		310	Cct/Act																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563047	21563047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	60	488	2	ENST00000382592.4:c.872C>T	p.Thr291Met	p.T291M	ENST00000382592	NM_014572.2	291	aCg/aTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28963941	28963941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	61	683	1	ENST00000282397.4:c.1961C>A	p.Thr654Lys	p.T654K	ENST00000282397	NM_002019.4	654	aCa/aAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32890647	32890647	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	59	356	1	ENST00000380152.3:c.50C>G	p.Thr17Arg	p.T17R	ENST00000380152		17	aCa/aGa																																																																															
MGA	23269	MSKCC	GRCh37	15	42041335	42041335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1106	258	878	0	ENST00000219905.7:c.5530G>T	p.Ala1844Ser	p.A1844S	ENST00000219905	NM_001164273.1	1844	Gct/Tct																																																																															
MGA	23269	MSKCC	GRCh37	15	42041984	42041984	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	195	848	0	ENST00000219905.7:c.6179A>C	p.Gln2060Pro	p.Q2060P	ENST00000219905	NM_001164273.1	2060	cAa/cCa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472574	88472574	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	139	541	0	ENST00000360948.2:c.1981A>T	p.Ser661Cys	p.S661C	ENST00000360948	NM_001012338.2	661	Agt/Tgt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472667	88472667	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	16	262	0	ENST00000360948.2:c.1890-2A>T		p.X630_splice	ENST00000360948	NM_001012338.2	630																																																																																
NTRK3	4916	MSKCC	GRCh37	15	88670433	88670433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	51	604	1	ENST00000360948.2:c.1253C>A	p.Pro418His	p.P418H	ENST00000360948	NM_001012338.2	418	cCt/cAt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799332	88799332	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	57	620	0	ENST00000360948.2:c.53T>A	p.Leu18Gln	p.L18Q	ENST00000360948	NM_001012338.2	18	cTg/cAg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434796	99434796	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	114	448	0	ENST00000268035.6:c.883G>T	p.Gly295Trp	p.G295W	ENST00000268035	NM_000875.3	295	Ggg/Tgg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857591	9857591	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	92	582	0	ENST00000330684.3:c.3810C>G	p.Asp1270Glu	p.D1270E	ENST00000330684	NM_001134407.1	1270	gaC/gaG																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934820	9934820	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	79	796	0	ENST00000330684.3:c.1470C>A	p.Asn490Lys	p.N490K	ENST00000330684	NM_001134407.1	490	aaC/aaA																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934900	9934900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	73	527	0	ENST00000330684.3:c.1390C>G	p.Leu464Val	p.L464V	ENST00000330684	NM_001134407.1	464	Ctg/Gtg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646791	23646791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	167	722	0	ENST00000261584.4:c.1076G>T	p.Ser359Ile	p.S359I	ENST00000261584	NM_024675.3	359	aGt/aTt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654599	67654599	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	120	623	3	ENST00000264010.4:c.1087-1G>T		p.X363_splice	ENST00000264010	NM_006565.3	363																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81929422	81929422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	178	777	1	ENST00000359376.3:c.1083G>T	p.Trp361Cys	p.W361C	ENST00000359376	NM_002661.3	361	tgG/tgT																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346628	89346628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	144	590	0	ENST00000301030.4:c.6322G>T	p.Gly2108Cys	p.G2108C	ENST00000301030	NM_001256183.1	2108	Ggc/Tgc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7980312	7980312	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	30	339	0	ENST00000319144.4:c.1271A>G	p.Tyr424Cys	p.Y424C	ENST00000319144	NM_001139.2	424	tAc/tGc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7984214	7984214	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	149	602	0	ENST00000319144.4:c.515C>A	p.Pro172His	p.P172H	ENST00000319144	NM_001139.2	172	cCc/cAc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983722	15983722	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	74	389	0	ENST00000268712.3:c.3400G>T	p.Gly1134Cys	p.G1134C	ENST00000268712	NM_006311.3	1134	Ggt/Tgt																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40379606	40379606	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1579	102	1005	2	ENST00000293328.3:c.226G>T	p.Val76Leu	p.V76L	ENST00000293328	NM_012448.3	76	Gtg/Ttg																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804398	46804398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	67	508	0	ENST00000290295.7:c.609C>G	p.Ser203Arg	p.S203R	ENST00000290295	NM_006361.5	203	agC/agG																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58725428	58725428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1328	148	670	0	ENST00000305921.3:c.1002G>T	p.Glu334Asp	p.E334D	ENST00000305921	NM_003620.3	334	gaG/gaT																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59876658	59876658	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	112	282	0	ENST00000259008.2:c.1143G>C	p.Met381Ile	p.M381I	ENST00000259008	NM_032043.2	381	atG/atC																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59885986	59885986	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	116	511	1	ENST00000259008.2:c.760A>T	p.Lys254Ter	p.K254*	ENST00000259008	NM_032043.2	254	Aag/Tag																																																																															
CD79B	974	MSKCC	GRCh37	17	62007249	62007249	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	50	462	0	ENST00000392795.3:c.434-1G>T		p.X145_splice	ENST00000392795	NM_001039933.1	145																																																																																
AXIN2	8313	MSKCC	GRCh37	17	63533913	63533913	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	63	285	0	ENST00000307078.5:c.1241G>T	p.Arg414Leu	p.R414L	ENST00000307078	NM_004655.3	414	cGg/cTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119034	70119035	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	71	471	0	ENST00000245479.2:c.606_607delinsAT	p.Ile203Phe	p.I203F	ENST00000245479	NM_000346.3	202	gcCAtc/gcATtc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119697	70119697	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1190	75	654	0	ENST00000245479.2:c.701del	p.Pro234HisfsTer19	p.P234Hfs*19	ENST00000245479	NM_000346.3	233	ggC/gg																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733239	74733239	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	74	554	1	ENST00000359995.5:c.4A>T	p.Ser2Cys	p.S2C	ENST00000359995	NM_001195427.1	2	Agc/Tgc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39576695	39576695	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	111	339	0	ENST00000262039.4:c.984+1G>T		p.X328_splice	ENST00000262039	NM_002647.2	328																																																																																
PIK3C3	5289	MSKCC	GRCh37	18	39607485	39607485	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	128	592	0	ENST00000262039.4:c.1563G>T	p.Met521Ile	p.M521I	ENST00000262039	NM_002647.2	521	atG/atT																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222937	5222937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	64	389	1	ENST00000357368.4:c.2866G>A	p.Ala956Thr	p.A956T	ENST00000357368	NM_002850.3	956	Gcc/Acc																																																																															
INSR	3643	MSKCC	GRCh37	19	7117192	7117192	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	111	644	1	ENST00000302850.5:c.4024G>T	p.Gly1342Cys	p.G1342C	ENST00000302850	NM_000208.2	1342	Ggc/Tgc																																																																															
INSR	3643	MSKCC	GRCh37	19	7141781	7141781	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	132	696	0	ENST00000302850.5:c.2589G>T	p.Glu863Asp	p.E863D	ENST00000302850	NM_000208.2	863	gaG/gaT																																																																															
INSR	3643	MSKCC	GRCh37	19	7142937	7142937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	97	602	2	ENST00000302850.5:c.2432G>T	p.Gly811Val	p.G811V	ENST00000302850	NM_000208.2	811	gGc/gTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272206	15272206	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	98	283	0	ENST00000263388.2:c.6233G>T	p.Arg2078Leu	p.R2078L	ENST00000263388	NM_000435.2	2078	cGg/cTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15278138	15278138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	155	683	2	ENST00000263388.2:c.5284G>T	p.Val1762Leu	p.V1762L	ENST00000263388	NM_000435.2	1762	Gtg/Ttg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30303465	30303465	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	39	148	0	ENST00000262643.3:c.3G>T	p.Met1?	p.M1?	ENST00000262643	NM_001238.2	1	atG/atT																																																																															
AXL	558	MSKCC	GRCh37	19	41765760	41765760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	75	375	0	ENST00000301178.4:c.2636C>A	p.Pro879His	p.P879H	ENST00000301178	NM_021913.4	879	cCt/cAt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905378	50905378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	70	873	0	ENST00000440232.2:c.586G>A	p.Glu196Lys	p.E196K	ENST00000440232	NM_002691.3	196	Gag/Aag																																																																															
ALK	238	MSKCC	GRCh37	2	29420448	29420448	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	171	668	0	ENST00000389048.3:c.4033G>C	p.Gly1345Arg	p.G1345R	ENST00000389048	NM_004304.4	1345	Gga/Cga																																																																															
ALK	238	MSKCC	GRCh37	2	29430115	29430115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	124	581	1	ENST00000389048.3:c.3860G>T	p.Gly1287Val	p.G1287V	ENST00000389048	NM_004304.4	1287	gGc/gTc																																																																															
ALK	238	MSKCC	GRCh37	2	29551338	29551338	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	59	486	0	ENST00000389048.3:c.1292C>A	p.Pro431Gln	p.P431Q	ENST00000389048	NM_004304.4	431	cCa/cAa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99156092	99156092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	62	540	0	ENST00000074304.5:c.772G>T	p.Val258Leu	p.V258L	ENST00000074304	NM_001134224.1	258	Gtg/Ttg																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735327	204735327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	74	260	0	ENST00000302823.3:c.128C>T	p.Pro43Leu	p.P43L	ENST00000302823	NM_005214.4	43	cCt/cTt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661203	227661203	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	125	580	0	ENST00000305123.5:c.2252A>G	p.Tyr751Cys	p.Y751C	ENST00000305123	NM_005544.2	751	tAc/tGc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561133	9561133	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	170	578	0	ENST00000353224.5:c.649T>A	p.Trp217Arg	p.W217R	ENST00000353224	NM_177990.2	217	Tgg/Agg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31368200	31368200	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	100	567	0	ENST00000328111.2:c.71A>C	p.Asn24Thr	p.N24T	ENST00000328111	NM_006892.3	24	aAc/aCc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31376663	31376663	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	40	430	0	ENST00000328111.2:c.658G>T	p.Gly220Trp	p.G220W	ENST00000328111	NM_006892.3	220	Ggg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743858	40743858	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	295	563	0	ENST00000373198.4:c.3137del	p.Arg1046ProfsTer54	p.R1046Pfs*54	ENST00000373198	NM_133170.3	1046	cGc/cc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743887	40743887	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1082	103	626	0	ENST00000373198.4:c.3108A>T	p.Glu1036Asp	p.E1036D	ENST00000373198	NM_133170.3	1036	gaA/gaT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944384	40944384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	56	665	1	ENST00000373198.4:c.2118G>T	p.Gln706His	p.Q706H	ENST00000373198	NM_133170.3	706	caG/caT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076937	41076937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	86	633	1	ENST00000373198.4:c.1483G>T	p.Gly495Trp	p.G495W	ENST00000373198	NM_133170.3	495	Ggg/Tgg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46262333	46262333	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1385	118	818	2	ENST00000371998.3:c.917G>T	p.Ser306Ile	p.S306I	ENST00000371998		306	aGt/aTt																																																																															
ERG	2078	MSKCC	GRCh37	21	39755614	39755614	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	88	615	0	ENST00000288319.7:c.1151A>G	p.Lys384Arg	p.K384R	ENST00000288319	NM_182918.3	384	aAg/aGg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42840434	42840434	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	81	492	0	ENST00000398585.3:c.1314G>C	p.Lys438Asn	p.K438N	ENST00000398585	NM_001135099.1	438	aaG/aaC																																																																															
EP300	2033	MSKCC	GRCh37	22	41562664	41562664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	67	377	0	ENST00000263253.7:c.3868G>T	p.Ala1290Ser	p.A1290S	ENST00000263253	NM_001429.3	1290	Gct/Tct																																																																															
RAF1	5894	MSKCC	GRCh37	3	12641226	12641226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	84	750	0	ENST00000251849.4:c.1072G>T	p.Gly358Cys	p.G358C	ENST00000251849	NM_002880.3	358	Ggc/Tgc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30664712	30664712	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	81	393	0	ENST00000359013.4:c.116A>G	p.Lys39Arg	p.K39R	ENST00000359013	NM_001024847.2	39	aAa/aGa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713423	30713423	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	108	431	0	ENST00000359013.4:c.823G>C	p.Val275Leu	p.V275L	ENST00000359013	NM_001024847.2	275	Gtg/Ctg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729969	30729969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200958264		P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	63	389	0	ENST00000359013.4:c.1565G>A	p.Arg522Gln	p.R522Q	ENST00000359013	NM_001024847.2	522	cGa/cAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164121	47164121	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	46	359	1	ENST00000409792.3:c.2005A>T	p.Ile669Leu	p.I669L	ENST00000409792	NM_014159.6	669	Ata/Tta																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643881	52643881	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	98	483	0	ENST00000394830.3:c.2015A>T	p.Tyr672Phe	p.Y672F	ENST00000394830	NM_018313.4	672	tAt/tTt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134644668	134644669	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	115	389	1	ENST00000398015.3:c.69_70delinsTT	p.Met23_Asp24delinsIleTyr	p.M23_D24delinsIY	ENST00000398015	NM_004441.4	23	atGGac/atTTac																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670492	134670492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	111	516	0	ENST00000398015.3:c.403C>T	p.Leu135Phe	p.L135F	ENST00000398015	NM_004441.4	135	Ctc/Ttc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851693	134851693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	94	464	0	ENST00000398015.3:c.1099C>A	p.Arg367Ser	p.R367S	ENST00000398015	NM_004441.4	367	Cgc/Agc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134881021	134881021	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	53	348	0	ENST00000398015.3:c.1584C>A	p.Asp528Glu	p.D528E	ENST00000398015	NM_004441.4	528	gaC/gaA																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884836	134884836	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	45	580	0	ENST00000398015.3:c.1612C>A	p.Gln538Lys	p.Q538K	ENST00000398015	NM_004441.4	538	Cag/Aag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134977881	134977881	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	47	562	0	ENST00000398015.3:c.2875del	p.Ala959GlnfsTer8	p.A959Qfs*8	ENST00000398015	NM_004441.4	958	ttG/tt																																																																															
ATR	545	MSKCC	GRCh37	3	142184020	142184020	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	135	591	0	ENST00000350721.4:c.6960G>T	p.Lys2320Asn	p.K2320N	ENST00000350721	NM_001184.3	2320	aaG/aaT																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430989	181430989	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	285	515	0	ENST00000325404.1:c.841G>C	p.Ala281Pro	p.A281P	ENST00000325404	NM_003106.3	281	Gcc/Ccc																																																																															
BCL6	604	MSKCC	GRCh37	3	187446986	187446986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	158	660	0	ENST00000232014.4:c.1207C>T	p.Leu403Phe	p.L403F	ENST00000232014	NM_001130845.1	403	Ctt/Ttt																																																																															
BCL6	604	MSKCC	GRCh37	3	187447002	187447002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	159	676	0	ENST00000232014.4:c.1191G>T	p.Gln397His	p.Q397H	ENST00000232014	NM_001130845.1	397	caG/caT																																																																															
BCL6	604	MSKCC	GRCh37	3	187447175	187447175	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	121	487	0	ENST00000232014.4:c.1018C>T	p.Gln340Ter	p.Q340*	ENST00000232014	NM_001130845.1	340	Cag/Tag																																																																															
TP63	8626	MSKCC	GRCh37	3	189590764	189590764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	194	533	1	ENST00000264731.3:c.1329C>A	p.His443Gln	p.H443Q	ENST00000264731	NM_003722.4	443	caC/caA																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806204	1806204	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	69	621	0	ENST00000260795.2:c.1223C>G	p.Ser408Cys	p.S408C	ENST00000260795		408	tCc/tGc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129889	55129889	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	720	707	0	ENST00000257290.5:c.423G>T	p.Glu141Asp	p.E141D	ENST00000257290	NM_006206.4	141	gaG/gaT																																																																															
KDR	3791	MSKCC	GRCh37	4	55955115	55955115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1134	140	542	2	ENST00000263923.4:c.3430C>A	p.His1144Asn	p.H1144N	ENST00000263923	NM_002253.2	1144	Cac/Aac																																																																															
KDR	3791	MSKCC	GRCh37	4	55968166	55968167	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	799	642	2	ENST00000263923.4:c.2163_2164delinsAT	p.Asn721_Leu722delinsLysPhe	p.N721_L722delinsKF	ENST00000263923	NM_002253.2	721	aaCCtc/aaATtc																																																																															
KDR	3791	MSKCC	GRCh37	4	55976822	55976822	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1235	132	542	0	ENST00000263923.4:c.1090T>C	p.Trp364Arg	p.W364R	ENST00000263923	NM_002253.2	364	Tgg/Cgg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143045914	143045914	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	44	383	0	ENST00000262992.4:c.1721-1G>C		p.X574_splice	ENST00000262992	NM_001101669.1	574																																																																																
TERT	7015	MSKCC	GRCh37	5	1293710	1293710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	41	308	1	ENST00000310581.5:c.1291C>A	p.Pro431Thr	p.P431T	ENST00000310581	NM_198253.2	431	Ccc/Acc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874550	35874550	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	71	714	0	ENST00000303115.3:c.707-1G>T		p.X236_splice	ENST00000303115	NM_002185.3	236																																																																																
IL7R	3575	MSKCC	GRCh37	5	35876335	35876335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	142	432	1	ENST00000303115.3:c.1127C>A	p.Ala376Glu	p.A376E	ENST00000303115	NM_002185.3	376	gCa/gAa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950170	38950170	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	54	468	0	ENST00000357387.3:c.3780T>A	p.Ser1260Arg	p.S1260R	ENST00000357387	NM_152756.3	1260	agT/agA																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449755	149449755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	89	407	0	ENST00000286301.3:c.1309C>T	p.His437Tyr	p.H437Y	ENST00000286301	NM_005211.3	437	Cac/Tac																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460427	149460427	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	189	749	1	ENST00000286301.3:c.210C>A	p.Ser70Arg	p.S70R	ENST00000286301	NM_005211.3	70	agC/agA																																																																															
NPM1	4869	MSKCC	GRCh37	5	170832307	170832307	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	120	661	0	ENST00000296930.5:c.671G>T	p.Gly224Val	p.G224V	ENST00000296930	NM_002520.6	224	gGa/gTa																																																																															
E2F3	1871	MSKCC	GRCh37	6	20481448	20481448	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	98	400	0	ENST00000346618.3:c.517C>G	p.Pro173Ala	p.P173A	ENST00000346618	NM_001949.4	173	Ccc/Gcc																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158413	26158413	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	60	452	0	ENST00000289316.2:c.16A>T	p.Lys6Ter	p.K6*	ENST00000289316	NM_138720.2	6	Aag/Tag																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197206	26197206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2168	134	1146	0	ENST00000356476.2:c.273G>A	p.Met91Ile	p.M91I	ENST00000356476		91	atG/atA																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778180	27778180	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1921	270	1316	0	ENST00000369163.2:c.329T>A	p.Leu110Gln	p.L110Q	ENST00000369163	NM_003536.2	110	cTg/cAg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178643	32178643	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	97	567	0	ENST00000375023.3:c.2751C>G	p.His917Gln	p.H917Q	ENST00000375023	NM_004557.3	917	caC/caG																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32183037	32183037	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	120	593	1	ENST00000375023.3:c.1987G>T	p.Asp663Tyr	p.D663Y	ENST00000375023	NM_004557.3	663	Gac/Tac																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32183123	32183123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	93	626	0	ENST00000375023.3:c.1901G>T	p.Cys634Phe	p.C634F	ENST00000375023	NM_004557.3	634	tGc/tTc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287163	33287163	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	55	465	0	ENST00000374542.5:c.1934G>T	p.Gly645Val	p.G645V	ENST00000374542	NM_001141970.1	645	gGa/gTa																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997777	149997777	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	59	524	0	ENST00000253339.5:c.2690G>T	p.Arg897Ile	p.R897I	ENST00000253339		897	aGa/aTa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005729	150005729	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	54	229	0	ENST00000253339.5:c.497-1G>A		p.X166_splice	ENST00000253339		166																																																																																
CARD11	84433	MSKCC	GRCh37	7	2959038	2959038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	137	427	1	ENST00000396946.4:c.2478C>A	p.Asp826Glu	p.D826E	ENST00000396946	NM_032415.4	826	gaC/gaA																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962825	2962825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	119	520	0	ENST00000396946.4:c.2083del	p.Val695SerfsTer21	p.V695Sfs*21	ENST00000396946	NM_032415.4	695	Gtc/tc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729898	41729898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1123	201	820	1	ENST00000242208.4:c.631G>A	p.Val211Ile	p.V211I	ENST00000242208	NM_002192.2	211	Gta/Ata																																																																															
HGF	3082	MSKCC	GRCh37	7	81334974	81334974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	85	515	0	ENST00000222390.5:c.1853G>T	p.Gly618Val	p.G618V	ENST00000222390	NM_000601.4	618	gGc/gTc																																																																															
HGF	3082	MSKCC	GRCh37	7	81355224	81355224	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	134	593	0	ENST00000222390.5:c.1150G>T	p.Asp384Tyr	p.D384Y	ENST00000222390	NM_000601.4	384	Gat/Tat																																																																															
HGF	3082	MSKCC	GRCh37	7	81372688	81372688	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	286	575	0	ENST00000222390.5:c.846C>G	p.Tyr282Ter	p.Y282*	ENST00000222390	NM_000601.4	282	taC/taG																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508232	106508232	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	30	243	0	ENST00000359195.3:c.226C>G	p.Leu76Val	p.L76V	ENST00000359195	NM_002649.2	76	Ctg/Gtg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508730	106508730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	41	474	0	ENST00000359195.3:c.724G>T	p.Gly242Cys	p.G242C	ENST00000359195	NM_002649.2	242	Ggc/Tgc																																																																															
BRAF	673	MSKCC	GRCh37	7	140449179	140449179	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	26	220	0	ENST00000288602.6:c.1900A>T	p.Ser634Cys	p.S634C	ENST00000288602	NM_004333.4	634	Agc/Tgc																																																																															
BRAF	673	MSKCC	GRCh37	7	140550008	140550008	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	140	461	0	ENST00000288602.6:c.143G>A	p.Trp48Ter	p.W48*	ENST00000288602	NM_004333.4	48	tGg/tAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859850	151859850	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	51	529	0	ENST00000262189.6:c.10812G>C	p.Lys3604Asn	p.K3604N	ENST00000262189	NM_170606.2	3604	aaG/aaC																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371914	55371914	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	16	160	0	ENST00000297316.4:c.604C>A	p.His202Asn	p.H202N	ENST00000297316	NM_022454.3	202	Cac/Aac																																																																															
TCEB1	6921	MSKCC	GRCh37	8	74868154	74868154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	10	74	0	ENST00000284811.8:c.140G>T	p.Ser47Ile	p.S47I	ENST00000284811		47	aGt/aTt																																																																															
NBN	4683	MSKCC	GRCh37	8	90965495	90965495	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	94	537	0	ENST00000265433.3:c.1822G>T	p.Val608Leu	p.V608L	ENST00000265433	NM_002485.4	608	Gta/Tta																																																																															
MYC	4609	MSKCC	GRCh37	8	128751253	128751253	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	47	212	0	ENST00000377970.2:c.790A>C	p.Ser264Arg	p.S264R	ENST00000377970	NM_002467.4	264	Agc/Cgc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340344	8340344	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	59	500	0	ENST00000356435.5:c.5252G>T	p.Arg1751Ile	p.R1751I	ENST00000356435		1751	aGa/aTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8436679	8436679	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	210	444	0	ENST00000356435.5:c.3999C>A	p.Ser1333Arg	p.S1333R	ENST00000356435		1333	agC/agA																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528611	8528611	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	92	734	0	ENST00000356435.5:c.521G>T	p.Arg174Leu	p.R174L	ENST00000356435		174	cGt/cTt																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015121	37015121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	118	699	0	ENST00000358127.4:c.283G>T	p.Val95Leu	p.V95L	ENST00000358127	NM_001280556.1	95	Gtg/Ttg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98215871	98215871	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143781513		P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	98	411	0	ENST00000331920.6:c.3338G>A	p.Arg1113His	p.R1113H	ENST00000331920	NM_000264.3	1113	cGc/cAc																																																																															
ABL1	25	MSKCC	GRCh37	9	133759456	133759456	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	201	765	1	ENST00000318560.5:c.1779A>T	p.Lys593Asn	p.K593N	ENST00000318560	NM_005157.4	593	aaA/aaT																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139815572	139815572	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	72	775	0	ENST00000247668.2:c.1043C>G	p.Ser348Cys	p.S348C	ENST00000247668	NM_021138.3	348	tCc/tGc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317481	1317481	+	downstream_gene_variant	3'Flank	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	74	832	0				ENST00000381566																																																																																		
GATA1	2623	MSKCC	GRCh37	X	48650286	48650286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	235	637	1	ENST00000376670.3:c.256G>T	p.Gly86Trp	p.G86W	ENST00000376670	NM_002049.3	86	Ggg/Tgg																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652543	48652543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	47	350	0	ENST00000376670.3:c.1214C>T	p.Thr405Ile	p.T405I	ENST00000376670	NM_002049.3	405	aCt/aTt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411818	63411818	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	102	909	0	ENST00000330258.3:c.1349C>A	p.Pro450His	p.P450H	ENST00000330258	NM_152424.3	450	cCt/cAt																																																																															
AR	367	MSKCC	GRCh37	X	66765529	66765529	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	113	643	1	ENST00000374690.3:c.541C>A	p.Leu181Ile	p.L181I	ENST00000374690	NM_000044.3	181	Ctt/Att																																																																															
MED12	9968	MSKCC	GRCh37	X	70344011	70344011	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	97	780	2	ENST00000374080.3:c.1747G>A	p.Asp583Asn	p.D583N	ENST00000374080		583	Gac/Aac																																																																															
MED12	9968	MSKCC	GRCh37	X	70346243	70346243	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	84	776	0	ENST00000374080.3:c.2594A>T	p.Tyr865Phe	p.Y865F	ENST00000374080		865	tAc/tTc																																																																															
MED12	9968	MSKCC	GRCh37	X	70347811	70347811	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	273	791	0	ENST00000374080.3:c.3050G>T	p.Trp1017Leu	p.W1017L	ENST00000374080		1017	tGg/tTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70352041	70352041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	75	753	0	ENST00000374080.3:c.4238C>A	p.Thr1413Asn	p.T1413N	ENST00000374080		1413	aCc/aAc																																																																															
XIAP	331	MSKCC	GRCh37	X	123020041	123020041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	65	677	4	ENST00000355640.3:c.529G>T	p.Ala177Ser	p.A177S	ENST00000355640		177	Gct/Tct																																																																															
XIAP	331	MSKCC	GRCh37	X	123022475	123022475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	231	837	0	ENST00000355640.3:c.884G>T	p.Gly295Val	p.G295V	ENST00000355640		295	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	85	691	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0013829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	54	684	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0013829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	43	719	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0013829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	47	220	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604764	48604765	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	96	862	2	ENST00000342988.3:c.1587dup	p.His530ThrfsTer47	p.H530Tfs*47	ENST00000342988	NM_005359.5	529	tta/ttAa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357060	89357060	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	33	1089	0	ENST00000301030.4:c.574del	p.Ala192GlnfsTer36	p.A192Qfs*36	ENST00000301030	NM_001256183.1	192	Gca/ca																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983210	149983210	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	60	721	0	ENST00000253339.5:c.3048del	p.Ser1017ValfsTer3	p.S1017Vfs*3	ENST00000253339		1016	tcC/tc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0013995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	536	727	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0013995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	321	807	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs760640852		P-0013995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	28	266	0	ENST00000304494.5:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000304494	NM_000077.4	74	Gac/Tac																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729606	41729606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1239	337	977	2	ENST00000242208.4:c.923G>A	p.Arg308His	p.R308H	ENST00000242208	NM_002192.2	308	cGt/cAt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199373	16199373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	78	805	1	ENST00000375759.3:c.146C>T	p.Ala49Val	p.A49V	ENST00000375759	NM_015001.2	49	gCc/gTc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432182	121432182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	82	530	1	ENST00000257555.6:c.929C>A	p.Pro310His	p.P310H	ENST00000257555		310	cCt/cAt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120311	94120311	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	234	913	0	ENST00000369303.4:c.740G>C	p.Arg247Thr	p.R247T	ENST00000369303	NM_004440.3	247	aGg/aCg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0014021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	189	509	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670358	134670358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	296	509	2	ENST00000398015.3:c.269G>A	p.Arg90His	p.R90H	ENST00000398015	NM_004441.4	90	cGc/cAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11186829	11186829	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	157	485	1	ENST00000361445.4:c.6376G>T	p.Val2126Phe	p.V2126F	ENST00000361445	NM_004958.3	2126	Gtt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0014021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	252	363	0	ENST00000269305.4:c.559+2T>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
ALOX12B	242	MSKCC	GRCh37	17	7990714	7990714	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147784568		P-0014021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	442	661	1	ENST00000319144.4:c.47C>T	p.Ser16Leu	p.S16L	ENST00000319144	NM_001139.2	16	tCg/tTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023324	31023324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	511	457	0	ENST00000375687.4:c.2809C>T	p.Pro937Ser	p.P937S	ENST00000375687	NM_015338.5	937	Cct/Tct																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467875	66467875	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	173	588	0	ENST00000273854.3:c.394T>G	p.Phe132Val	p.F132V	ENST00000273854	NM_004439.5	132	Ttt/Gtt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971203	21971209	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	ATGACCT	ATGACCT	-			P-0014021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	56	142	0	ENST00000304494.5:c.151-2_155delAGGTCAT		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	348	396	0	ENST00000397062.3:c.101G>C	p.Arg34Pro	p.R34P	ENST00000397062	NM_006164.4	34	cGa/cCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0014166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	282	367	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	110	196	0	ENST00000304494.5:c.172del	p.Arg58GlufsTer88	p.R58Efs*88	ENST00000304494	NM_000077.4	58	Cga/ga																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246382	41246382	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	100	650	0	ENST00000357654.3:c.1166G>C	p.Ser389Thr	p.S389T	ENST00000357654	NM_007294.3	389	aGt/aCt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153259089	153259089	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0014166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	58	374	0	ENST00000281708.4:c.727-1G>A		p.X243_splice	ENST00000281708	NM_033632.3	243																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56179357	56179357	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	123	338	0	ENST00000399503.3:c.3670C>G	p.Pro1224Ala	p.P1224A	ENST00000399503	NM_005921.1	1224	Cca/Gca																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411734	63411734	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	278	455	0	ENST00000330258.3:c.1433G>T	p.Gly478Val	p.G478V	ENST00000330258	NM_152424.3	478	gGa/gTa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111461	8111462	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	364	465	0	ENST00000346208.3:c.947_948delinsAT	p.Ser316Tyr	p.S316Y	ENST00000346208		316	tCC/tAT																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717687	89717687	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	295	428	0	ENST00000371953.3:c.713delT	p.Phe238SerfsTer18	p.F238Sfs*18	ENST00000371953	NM_000314.4	238	Ttc/tc																																																																															
WT1	7490	MSKCC	GRCh37	11	32417917	32417917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	458	509	0	ENST00000332351.3:c.1135G>T	p.Val379Leu	p.V379L	ENST00000332351	NM_024426.4	379	Gta/Tta																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827327	72827327	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	578	603	0	ENST00000268489.5:c.9254A>C	p.Lys3085Thr	p.K3085T	ENST00000268489	NM_006885.3	3085	aAa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	533	489	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
CARM1	10498	MSKCC	GRCh37	19	10982593	10982593	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	129	154	0	ENST00000327064.4:c.215A>G	p.Tyr72Cys	p.Y72C	ENST00000327064	NM_199141.1	72	tAc/tGc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276654	15276654	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	620	609	0	ENST00000263388.2:c.5611T>C	p.Ser1871Pro	p.S1871P	ENST00000263388	NM_000435.2	1871	Tca/Cca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288874	15288874	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	314	322	0	ENST00000263388.2:c.3865G>T	p.Val1289Leu	p.V1289L	ENST00000263388	NM_000435.2	1289	Gtg/Ttg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942536	17942536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	570	581	0	ENST00000458235.1:c.2752C>A	p.Arg918Ser	p.R918S	ENST00000458235	NM_000215.3	918	Cgc/Agc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965748	25965748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1790	673	605	2	ENST00000435504.4:c.3458G>A	p.Ser1153Asn	p.S1153N	ENST00000435504		1153	aGc/aAc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519920		P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	215	283	0	ENST00000397062.3:c.85G>T	p.Asp29Tyr	p.D29Y	ENST00000397062	NM_006164.4	29	Gat/Tat																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259428	89259428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	693	454	1	ENST00000336596.2:c.572C>T	p.Ala191Val	p.A191V	ENST00000336596	NM_005233.5	191	gCc/gTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259462	89259463	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	610	437	0	ENST00000336596.2:c.606_607delinsAA	p.Cys202_Pro203delinsTer	p.C202_P203delins*	ENST00000336596	NM_005233.5	202	tgCCca/tgAAca																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189389	56189389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	450	464	0	ENST00000399503.3:c.4421C>T	p.Pro1474Leu	p.P1474L	ENST00000399503	NM_005921.1	1474	cCt/cTt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149505107	149505107	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1656	578	602	0	ENST00000261799.4:c.1708G>T	p.Glu570Ter	p.E570*	ENST00000261799	NM_002609.3	570	Gag/Tag																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798510	32798510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	608	571	0	ENST00000374899.4:c.1346G>T	p.Arg449Leu	p.R449L	ENST00000374899	NM_018833.2	449	cGa/cTa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94068124	94068124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	242	259	0	ENST00000369303.4:c.838G>T	p.Gly280Cys	p.G280C	ENST00000369303	NM_004440.3	280	Ggc/Tgc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453088	140453088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	645	388	0	ENST00000288602.6:c.1847C>A	p.Ser616Tyr	p.S616Y	ENST00000288602	NM_004333.4	616	tCc/tAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970988	21970988	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	1161	539	0	ENST00000304494.5:c.370C>G	p.Arg124Gly	p.R124G	ENST00000304494	NM_000077.4	124	Cgc/Ggc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971194	21971194	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	750	440	0	ENST00000304494.5:c.164del	p.Gly55AlafsTer91	p.G55Afs*91	ENST00000304494	NM_000077.4	55	gGc/gc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971199	21971199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	786	445	0	ENST00000304494.5:c.159G>A	p.Met53Ile	p.M53I	ENST00000304494	NM_000077.4	53	atG/atA																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045189	47045189	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	487	474	0	ENST00000329236.7:c.2196G>T	p.Glu732Asp	p.E732D	ENST00000329236	NM_001204466.1	732	gaG/gaT																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	208	591	0				ENST00000310581	NM_198253.2																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	95	577	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268144	153268144	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs920052554		P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	132	467	0	ENST00000281708.4:c.664C>T	p.Arg222Ter	p.R222*	ENST00000281708	NM_033632.3	222	Cga/Tga																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	142	467	2	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57466809	57466809	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs200163406		P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	164	374	0	ENST00000371085.3:c.28G>C	p.Glu10Gln	p.E10Q	ENST00000371085	NM_000516.4	10	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	535	893	4	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11205055	11205055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1155	195	714	0	ENST00000361445.4:c.4734G>A	p.Met1578Ile	p.M1578I	ENST00000361445	NM_004958.3	1578	atG/atA																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430819	78430819	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	146	620	0	ENST00000370768.2:c.570C>G	p.Ile190Met	p.I190M	ENST00000370768	NM_003902.3	190	atC/atG																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120493434	120493434	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	133	490	0	ENST00000256646.2:c.2392G>C	p.Glu798Gln	p.E798Q	ENST00000256646	NM_024408.3	798	Gaa/Caa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844195	156844195	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1169	187	672	1	ENST00000524377.1:c.1195+3G>A		p.X399_splice	ENST00000524377	NM_002529.3	399																																																																																
TET1	80312	MSKCC	GRCh37	10	70333350	70333350	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2153	227	837	0	ENST00000373644.4:c.1255C>G	p.Leu419Val	p.L419V	ENST00000373644	NM_030625.2	419	Ctt/Gtt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94209462	94209462	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	78	404	0	ENST00000323929.3:c.652C>G	p.Gln218Glu	p.Q218E	ENST00000323929	NM_005591.3	218	Cag/Gag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	406224	406224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	130	431	0	ENST00000399788.2:c.4217C>T	p.Ser1406Phe	p.S1406F	ENST00000399788	NM_001042603.1	1406	tCt/tTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48936959	48936960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	98	427	0	ENST00000267163.4:c.729dup	p.Ile244TyrfsTer4	p.I244Yfs*4	ENST00000267163	NM_000321.2	243	gtt/gTtt																																																																															
RB1	5925	MSKCC	GRCh37	13	48937091	48937091	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	45	234	0	ENST00000267163.4:c.859G>C	p.Glu287Gln	p.E287Q	ENST00000267163	NM_000321.2	287	Gag/Cag																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518208	103518208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	172	301	0	ENST00000355739.4:c.2146G>C	p.Glu716Gln	p.E716Q	ENST00000355739	NM_000123.3	716	Gaa/Caa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81891870	81891870	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	122	499	0	ENST00000359376.3:c.340G>A	p.Asp114Asn	p.D114N	ENST00000359376	NM_002661.3	114	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912654		P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	247	704	0	ENST00000269305.4:c.469G>A	p.Val157Ile	p.V157I	ENST00000269305	NM_001126112.2	157	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578488	7578488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1094	281	800	0	ENST00000269305.4:c.442G>A	p.Asp148Asn	p.D148N	ENST00000269305	NM_001126112.2	148	Gat/Aat																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16089884	16089884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	70	373	0	ENST00000268712.3:c.226C>T	p.His76Tyr	p.H76Y	ENST00000268712	NM_006311.3	76	Cac/Tac																																																																															
NF1	4763	MSKCC	GRCh37	17	29576091	29576091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1843	184	726	0	ENST00000358273.4:c.4064C>T	p.Ser1355Leu	p.S1355L	ENST00000358273	NM_001042492.2	1355	tCa/tTa																																																																															
MSI2	124540	MSKCC	GRCh37	17	55754356	55754356	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1354	216	695	2	ENST00000284073.2:c.954G>T	p.Leu318Phe	p.L318F	ENST00000284073	NM_138962.2	318	ttG/ttT																																																																															
PMS1	5378	MSKCC	GRCh37	2	190738302	190738302	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	84	395	0	ENST00000441310.2:c.2554G>C	p.Glu852Gln	p.E852Q	ENST00000441310	NM_000534.4	852	Gaa/Caa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546620	9546620	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	167	549	0	ENST00000353224.5:c.1402G>C	p.Glu468Gln	p.E468Q	ENST00000353224	NM_177990.2	468	Gag/Cag																																																																															
AURKA	6790	MSKCC	GRCh37	20	54959353	54959353	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	73	409	0	ENST00000312783.6:c.347C>G	p.Ser116Ter	p.S116*	ENST00000312783	NM_198436.1	116	tCa/tGa																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42840421	42840421	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1154	144	486	0	ENST00000398585.3:c.1327G>C	p.Glu443Gln	p.E443Q	ENST00000398585	NM_001135099.1	443	Gag/Cag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163682	47163682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	112	371	0	ENST00000409792.3:c.2444C>T	p.Ser815Leu	p.S815L	ENST00000409792	NM_014159.6	815	tCa/tTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919233	178919233	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	79	312	0	ENST00000263967.3:c.718A>C	p.Lys240Gln	p.K240Q	ENST00000263967	NM_006218.2	240	Aaa/Caa																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43745332	43745332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1206	429	743	0	ENST00000523873.1:c.245G>A	p.Arg82Gln	p.R82Q	ENST00000523873		82	cGa/cAa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527943	157527943	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	188	648	1	ENST00000346085.5:c.5668G>T	p.Glu1890Ter	p.E1890*	ENST00000346085	NM_020732.3	1890	Gaa/Taa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467966	50467966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	141	479	0	ENST00000331340.3:c.1201G>A	p.Glu401Lys	p.E401K	ENST00000331340	NM_006060.4	401	Gag/Aag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738338	145738338	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1531	261	786	0	ENST00000428558.2:c.2647G>T	p.Glu883Ter	p.E883*	ENST00000428558	NM_004260.3	883	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	803	601	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119789	70119789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	328	595	0	ENST00000245479.2:c.791G>C	p.Arg264Thr	p.R264T	ENST00000245479	NM_000346.3	264	aGa/aCa																																																																															
NF1	4763	MSKCC	GRCh37	17	29683977	29683977	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	378	490	0	ENST00000358273.4:c.7739-1G>A		p.X2580_splice	ENST00000358273	NM_001042492.2	2580																																																																																
ROS1	6098	MSKCC	GRCh37	6	117642470	117642470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	322	538	0	ENST00000368508.3:c.5729G>A	p.Arg1910Gln	p.R1910Q	ENST00000368508	NM_002944.2	1910	cGa/cAa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123324013	123324013	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	C			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	312	492	0	ENST00000358487.5:c.454+3A>G		p.X152_splice	ENST00000358487	NM_000141.4	152																																																																																
RB1	5925	MSKCC	GRCh37	13	48936978	48936978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	859	468	0	ENST00000267163.4:c.746C>T	p.Ser249Leu	p.S249L	ENST00000267163	NM_000321.2	249	tCa/tTa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866662	37866662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	595	675	0	ENST00000269571.5:c.829G>A	p.Asp277Asn	p.D277N	ENST00000269571		277	Gac/Aac																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622378	1622378	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	364	708	1	ENST00000344749.5:c.586G>T	p.Asp196Tyr	p.D196Y	ENST00000344749	NM_001136139.2	196	Gat/Tat																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645036	86645036	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	133	270	0	ENST00000274376.6:c.1108C>T	p.Gln370Ter	p.Q370*	ENST00000274376	NM_002890.2	370	Caa/Taa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32172076	32172076	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	349	662	0	ENST00000375023.3:c.2956A>C	p.Lys986Gln	p.K986Q	ENST00000375023	NM_004557.3	986	Aaa/Caa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117650519	117650519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	273	573	1	ENST00000368508.3:c.5339G>A	p.Arg1780Lys	p.R1780K	ENST00000368508	NM_002944.2	1780	aGa/aAa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390600	139390600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	483	832	1	ENST00000277541.6:c.7591G>A	p.Asp2531Asn	p.D2531N	ENST00000277541	NM_017617.3	2531	Gac/Aac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030650	47030650	+	intron_variant	Intron	SNP	A	A	T			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	295	678	0	ENST00000329236.7:c.201+1753A>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
ARAF	369	MSKCC	GRCh37	X	47426390	47426390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	305	547	1	ENST00000377045.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000377045	NM_001654.4	245	Ggt/Agt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	157	597	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	168	315	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	92	419	0	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	75	499	0	ENST00000303115.3:c.361delA	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	85	714	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	118	908	2	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	35	627	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	86	500	1	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	139	526	13	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	59	385	2	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905055	50905055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	39	520	0	ENST00000440232.2:c.342delG	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	113	Ggg/gg																																																																															
NBN	4683	MSKCC	GRCh37	8	90993676	90993676	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	107	540	0	ENST00000265433.3:c.247delA	p.Met83CysfsTer9	p.M83Cfs*9	ENST00000265433	NM_002485.4	83	Atg/tg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444378	49444378	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	143	732	1	ENST00000301067.7:c.2993del	p.Pro998LeufsTer2	p.P998Lfs*2	ENST00000301067	NM_003482.3	998	cCt/ct																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806569	1806569	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182935140		P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	44	720	1	ENST00000260795.2:c.1285G>A	p.Ala429Thr	p.A429T	ENST00000260795		429	Gcg/Acg																																																																															
IDH2	3418	MSKCC	GRCh37	15	90630704	90630704	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs118101777		P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	152	656	0	ENST00000330062.3:c.782G>A	p.Arg261His	p.R261H	ENST00000330062	NM_002168.2	261	cGt/cAt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760684	59760685	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	120	586	0	ENST00000259008.2:c.3722dup	p.Asn1241LysfsTer2	p.N1241Kfs*2	ENST00000259008	NM_032043.2	1241	aat/aaAt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119909	70119910	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	168	670	0	ENST00000245479.2:c.916dup	p.Val306GlyfsTer272	p.V306Gfs*272	ENST00000245479	NM_000346.3	304	ccg/ccGg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5207953	5207953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	125	834	1	ENST00000357368.4:c.5758C>T	p.Pro1920Ser	p.P1920S	ENST00000357368	NM_002850.3	1920	Ccg/Tcg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023535	27023535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	198	861	3	ENST00000324856.7:c.641C>A	p.Ser214Tyr	p.S214Y	ENST00000324856	NM_006015.4	214	tCc/tAc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739048	46739049	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	89	496	0	ENST00000371975.4:c.1403_1404dup	p.Glu469TrpfsTer40	p.E469Wfs*40	ENST00000371975	NM_003579.3	466	aag/aaGTg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243727081	243727081	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	123	655	0	ENST00000263826.5:c.889A>G	p.Ile297Val	p.I297V	ENST00000263826	NM_005465.4	297	Atc/Gtc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852536	63852536	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	93	500	0	ENST00000279873.7:c.3314A>G	p.Tyr1105Cys	p.Y1105C	ENST00000279873	NM_032199.2	1105	tAc/tGc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944549	71944549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	110	678	0	ENST00000298229.2:c.2105T>C	p.Ile702Thr	p.I702T	ENST00000298229	NM_001567.3	702	aTc/aCc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18499574	18499574	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	86	471	0	ENST00000266497.5:c.1430-1G>C		p.X477_splice	ENST00000266497		477																																																																																
PIK3C2G	5288	MSKCC	GRCh37	12	18656344	18656344	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	108	544	1	ENST00000266497.5:c.3023A>G	p.Tyr1008Cys	p.Y1008C	ENST00000266497		1008	tAt/tGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120832	115120838	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCGGC	GCCCGGC	CACGGG			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	81	460	2	ENST00000257566.3:c.168_174delinsCCCGTG	p.Gly58TrpfsTer30	p.G58Wfs*30	ENST00000257566	NM_016569.3	56	ctGCCGGGC/ctCCCGTG																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911148	32911148	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	130	597	0	ENST00000380152.3:c.2656A>G	p.Asn886Asp	p.N886D	ENST00000380152		886	Aat/Gat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913836	32913837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	89	612	3	ENST00000380152.3:c.5351dup	p.Asn1784LysfsTer3	p.N1784Kfs*3	ENST00000380152		1782	caa/cAaa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972843	32972843	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	91	563	0	ENST00000380152.3:c.10193A>G	p.Gln3398Arg	p.Q3398R	ENST00000380152		3398	cAg/cGg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103520549	103520549	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28929496		P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	96	480	2	ENST00000355739.4:c.2620G>A	p.Ala874Thr	p.A874T	ENST00000355739	NM_000123.3	874	Gcc/Acc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436171	110436171	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs558236298		P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	133	897	2	ENST00000375856.3:c.2230C>T	p.Arg744Cys	p.R744C	ENST00000375856	NM_003749.2	744	Cgc/Tgc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3929877	3929878	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	144	733	0	ENST00000262367.5:c.40dup	p.Arg14LysfsTer13	p.R14Kfs*13	ENST00000262367	NM_004380.2	14	aga/aAga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16049852	16049853	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	81	318	0	ENST00000268712.3:c.919dup	p.Ile307AsnfsTer6	p.I307Nfs*6	ENST00000268712	NM_006311.3	307	atc/aAtc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687298	37687298	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	136	594	0	ENST00000447079.4:c.4202A>G	p.Gln1401Arg	p.Q1401R	ENST00000447079	NM_015083.1	1401	cAg/cGg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740438	58740439	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	153	672	0	ENST00000305921.3:c.1349dupT	p.Leu450PhefsTer6	p.L450Ffs*6	ENST00000305921	NM_003620.3	448	aat/aaTt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229220	36229220	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	110	650	1	ENST00000222270.7:c.7910A>T	p.Asp2637Val	p.D2637V	ENST00000222270	NM_014727.1	2637	gAt/gTt																																																																															
CIC	23152	MSKCC	GRCh37	19	42794553	42794553	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	125	847	0	ENST00000575354.2:c.1633T>C	p.Ser545Pro	p.S545P	ENST00000575354	NM_015125.3	545	Tcg/Ccg																																																																															
CIC	23152	MSKCC	GRCh37	19	42798379	42798379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	137	769	1	ENST00000575354.2:c.4250G>A	p.Arg1417His	p.R1417H	ENST00000575354	NM_015125.3	1417	cGc/cAc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46609673	46609673	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	99	693	0	ENST00000263734.3:c.2402delC	p.Pro801HisfsTer39	p.P801Hfs*39	ENST00000263734	NM_001430.4	799	ttC/tt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198262832	198262832	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	82	360	0	ENST00000335508.6:c.3143A>G	p.Glu1048Gly	p.E1048G	ENST00000335508	NM_012433.2	1048	gAa/gGa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57470742	57470742	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	84	362	0	ENST00000371085.3:c.212+3A>G		p.X71_splice	ENST00000371085	NM_000516.4	71																																																																																
MAP3K13	9175	MSKCC	GRCh37	3	185146717	185146717	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	150	632	0	ENST00000265026.3:c.348A>G	p.Ile116Met	p.I116M	ENST00000265026	NM_004721.4	116	atA/atG																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38946656	38946657	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	71	379	0	ENST00000357387.3:c.4315-3dup		p.X1439_splice	ENST00000357387	NM_152756.3	1439																																																																																
MSH3	4437	MSKCC	GRCh37	5	79970914	79970915	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	264	825	11	ENST00000265081.6:c.1148dupA	p.Asn385GlnfsTer19	p.N385Qfs*19	ENST00000265081	NM_002439.4	380	-/A																																																																															
RASA1	5921	MSKCC	GRCh37	5	86633806	86633806	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	65	325	0	ENST00000274376.6:c.915T>G	p.Asp305Glu	p.D305E	ENST00000274376	NM_002890.2	305	gaT/gaG																																																																															
RASA1	5921	MSKCC	GRCh37	5	86633814	86633814	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	74	361	0	ENST00000274376.6:c.923T>A	p.Ile308Asn	p.I308N	ENST00000274376	NM_002890.2	308	aTt/aAt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86686673	86686673	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	115	521	0	ENST00000274376.6:c.3117G>C	p.Gln1039His	p.Q1039H	ENST00000274376	NM_002890.2	1039	caG/caC																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519641	176519641	+	splice_region_variant,intron_variant	Splice_Region	DEL	C	C	-			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	33	619	0	ENST00000292408.4:c.919-3del		p.X307_splice	ENST00000292408	NM_213647.1	307																																																																																
STK19	8859	MSKCC	GRCh37	6	31948469	31948469	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	84	495	0	ENST00000375331.2:c.940T>C	p.Tyr314His	p.Y314H	ENST00000375331	NM_004197.1	314	Tac/Cac																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93964414	93964414	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	102	613	0	ENST00000369303.4:c.2483A>G	p.Glu828Gly	p.E828G	ENST00000369303	NM_004440.3	828	gAa/gGa																																																																															
MET	4233	MSKCC	GRCh37	7	116397808	116397808	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	123	696	0	ENST00000397752.3:c.2086del	p.Thr696HisfsTer4	p.T696Hfs*4	ENST00000397752	NM_000245.2	694	ggA/gg																																																																															
RHEB	6009	MSKCC	GRCh37	7	151174416	151174416	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	A			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	111	610	0	ENST00000262187.5:c.275+3A>T		p.X92_splice	ENST00000262187	NM_005614.3	92																																																																																
NBN	4683	MSKCC	GRCh37	8	90958386	90958387	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	87	408	0	ENST00000265433.3:c.2051dup	p.Asn684LysfsTer58	p.N684Kfs*58	ENST00000265433	NM_002485.4	684	aat/aaAt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929061	44929061	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	117	319	0	ENST00000377967.4:c.2161T>C	p.Ser721Pro	p.S721P	ENST00000377967	NM_021140.2	721	Tca/Cca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262669	16262669	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138432235		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	124	365	0	ENST00000375759.3:c.9934C>T	p.Arg3312Cys	p.R3312C	ENST00000375759	NM_015001.2	3312	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023135	27023135	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	50	122	0	ENST00000324856.7:c.245delG	p.Gly82ValfsTer19	p.G82Vfs*19	ENST00000324856	NM_006015.4	81	Ggg/gg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	144	478	5	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	89	335	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	117	474	3	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156830874	156830874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	173	619	0	ENST00000524377.1:c.148T>C	p.Cys50Arg	p.C50R	ENST00000524377	NM_002529.3	50	Tgc/Cgc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193117069	193117069	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	172	417	1	ENST00000367435.3:c.802C>T	p.Arg268Ter	p.R268*	ENST00000367435	NM_024529.4	268	Cga/Tga																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982373	201982373	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1398134258		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1217	167	681	1	ENST00000359651.3:c.752G>A	p.Arg251Gln	p.R251Q	ENST00000359651		251	cGa/cAa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982989	201982989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	248	791	4	ENST00000359651.3:c.838C>T	p.Arg280Trp	p.R280W	ENST00000359651		280	Cgg/Tgg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206652386	206652386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	247	627	0	ENST00000367120.3:c.1093G>A	p.Val365Ile	p.V365I	ENST00000367120	NM_014002.3	365	Gtc/Atc																																																																															
FH	2271	MSKCC	GRCh37	1	241676971	241676971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	171	564	0	ENST00000366560.3:c.310G>A	p.Ala104Thr	p.A104T	ENST00000366560	NM_000143.3	104	Gct/Act																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	116	436	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717745	89717745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	179	406	0	ENST00000371953.3:c.770T>C	p.Phe257Ser	p.F257S	ENST00000371953	NM_000314.4	257	tTc/tCc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765123636		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	56	360	0	ENST00000369902.3:c.71dup	p.Ala25GlyfsTer23	p.A25Gfs*23	ENST00000369902	NM_016169.3	22	gcc/gCcc																																																																															
WT1	7490	MSKCC	GRCh37	11	32417879	32417880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	142	624	1	ENST00000332351.3:c.1172dup	p.Met392HisfsTer9	p.M392Hfs*9	ENST00000332351	NM_024426.4	391	ttc/ttTc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1265	213	840	5	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
ATM	472	MSKCC	GRCh37	11	108098609	108098609	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	89	237	0	ENST00000278616.4:c.183delT	p.Phe61LeufsTer15	p.F61Lfs*15	ENST00000278616	NM_000051.3	60	gTt/gt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118391551	118391551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	97	414	0	ENST00000534358.1:c.11464C>T	p.Arg3822Cys	p.R3822C	ENST00000534358	NM_005933.3	3822	Cgc/Tgc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	419038	419042	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTT	CTTTT	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	138	659	0	ENST00000399788.2:c.3305_3309del	p.Glu1102GlyfsTer9	p.E1102Gfs*9	ENST00000399788	NM_001042603.1	1102	gAAAAG/g																																																																															
ETV6	2120	MSKCC	GRCh37	12	12043918	12043918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	123	509	0	ENST00000396373.4:c.1297C>T	p.Arg433Cys	p.R433C	ENST00000396373	NM_001987.4	433	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	187	605	0	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	131	552	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243382	46243382	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	30	300	0	ENST00000334344.6:c.1735A>G	p.Thr579Ala	p.T579A	ENST00000334344	NM_152641.2	579	Aca/Gca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	244	704	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	141	605	1	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863293	57863293	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200730656		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	124	569	1	ENST00000228682.2:c.1388G>A	p.Ser463Asn	p.S463N	ENST00000228682	NM_005269.2	463	aGt/aAt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856166	111856166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	117	540	1	ENST00000341259.2:c.217C>T	p.Arg73Cys	p.R73C	ENST00000341259	NM_005475.2	73	Cgc/Tgc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885286	111885286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	147	429	2	ENST00000341259.2:c.1174C>T	p.Arg392Trp	p.R392W	ENST00000341259	NM_005475.2	392	Cgg/Tgg																																																																															
RAB35	11021	MSKCC	GRCh37	12	120535147	120535147	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	166	474	0	ENST00000229340.5:c.508C>T	p.Arg170Ter	p.R170*	ENST00000229340	NM_006861.6	170	Cga/Tga																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557912	21557912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	178	414	1	ENST00000382592.4:c.1933C>T	p.Arg645Trp	p.R645W	ENST00000382592	NM_014572.2	645	Cgg/Tgg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134628	41134628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	391	382	1	ENST00000379561.5:c.1000G>A	p.Glu334Lys	p.E334K	ENST00000379561	NM_002015.3	334	Gaa/Aaa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068315	30068315	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141649026		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	83	331	0	ENST00000331968.5:c.2084G>A	p.Arg695Gln	p.R695Q	ENST00000331968	NM_002742.2	695	cGg/cAg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396643	30396643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	36	147	0	ENST00000331968.5:c.76G>A	p.Ala26Thr	p.A26T	ENST00000331968	NM_002742.2	26	Gca/Aca																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610503	81610503	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137908024		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	77	397	0	ENST00000298171.2:c.2101C>T	p.Arg701Cys	p.R701C	ENST00000298171	NM_000369.2	701	Cgc/Tgc																																																																															
GREM1	26585	MSKCC	GRCh37	15	33022990	33022990	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	152	458	1	ENST00000300177.4:c.104delC	p.Pro35ArgfsTer49	p.P35Rfs*49	ENST00000300177	NM_001191322.1	33	atC/at																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631917	90631918	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	149	729	5	ENST00000330062.3:c.435dupG	p.Thr146AspfsTer126	p.T146Dfs*126	ENST00000330062	NM_002168.2	145	-/G																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99478614	99478614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	131	506	0	ENST00000268035.6:c.3256G>A	p.Asp1086Asn	p.D1086N	ENST00000268035	NM_000875.3	1086	Gat/Aat																																																																															
AXIN1	8312	MSKCC	GRCh37	16	338166	338166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	194	711	0	ENST00000262320.3:c.2545G>A	p.Val849Ile	p.V849I	ENST00000262320	NM_003502.3	849	Gtc/Atc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354437	354437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	127	623	0	ENST00000262320.3:c.1121C>T	p.Thr374Met	p.T374M	ENST00000262320	NM_003502.3	374	aCg/aTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129377	2129377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	149	598	1	ENST00000219476.3:c.3232C>T	p.Arg1078Trp	p.R1078W	ENST00000219476	NM_000548.3	1078	Cgg/Tgg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646322	3646322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	240	772	0	ENST00000294008.3:c.1756G>A	p.Ala586Thr	p.A586T	ENST00000294008	NM_032444.2	586	Gct/Act																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14014191	14014191	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	124	369	0	ENST00000311895.7:c.169T>A	p.Cys57Ser	p.C57S	ENST00000311895	NM_005236.2	57	Tgc/Agc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23649272	23649272	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs202194596		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	103	309	0	ENST00000261584.4:c.110G>A	p.Arg37His	p.R37H	ENST00000261584	NM_024675.3	37	cGt/cAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992437	72992437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	230	828	1	ENST00000268489.5:c.1608G>A	p.Met536Ile	p.M536I	ENST00000268489	NM_006885.3	536	atG/atA																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993143	72993143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	252	723	1	ENST00000268489.5:c.902C>T	p.Ala301Val	p.A301V	ENST00000268489	NM_006885.3	301	gCg/gTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81891957	81891957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	104	429	0	ENST00000359376.3:c.427G>A	p.Glu143Lys	p.E143K	ENST00000359376	NM_002661.3	143	Gag/Aag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346792	89346792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	117	314	1	ENST00000301030.4:c.6158C>T	p.Ala2053Val	p.A2053V	ENST00000301030	NM_001256183.1	2053	gCg/gTg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30321689	30321689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	220	712	0	ENST00000322652.5:c.1544G>A	p.Ser515Asn	p.S515N	ENST00000322652	NM_015355.2	515	aGt/aAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1181	166	658	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489466	40489466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	200	515	1	ENST00000264657.5:c.784C>T	p.Arg262Trp	p.R262W	ENST00000264657	NM_139276.2	262	Cgg/Tgg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40497641	40497641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	215	553	0	ENST00000264657.5:c.308G>A	p.Arg103Gln	p.R103Q	ENST00000264657	NM_139276.2	103	cGg/cAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	478	596	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
CD79B	974	MSKCC	GRCh37	17	62007455	62007455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	95	409	0	ENST00000392795.3:c.412G>A	p.Gly138Ser	p.G138S	ENST00000392795	NM_001039933.1	138	Ggc/Agc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132522	11132522	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778175819		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	201	616	1	ENST00000344626.4:c.2738C>T	p.Pro913Leu	p.P913L	ENST00000344626	NM_003072.3	913	cCg/cTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135088	11135088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	232	752	0	ENST00000344626.4:c.3055A>G	p.Thr1019Ala	p.T1019A	ENST00000344626	NM_003072.3	1019	Act/Gct																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349666	15349666	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200976853		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	164	491	0	ENST00000263377.2:c.3908C>T	p.Ala1303Val	p.A1303V	ENST00000263377	NM_058243.2	1303	gCg/gTg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18971636	18971636	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	193	548	0	ENST00000262803.5:c.2302A>G	p.Thr768Ala	p.T768A	ENST00000262803	NM_002911.3	768	Acc/Gcc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19258521	19258521	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	213	751	0	ENST00000162023.5:c.379C>T	p.Arg127Ter	p.R127*	ENST00000162023		127	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211460	36211460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1209	278	897	2	ENST00000222270.7:c.1211C>T	p.Pro404Leu	p.P404L	ENST00000222270	NM_014727.1	404	cCg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222828	36222828	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	234	752	4	ENST00000222270.7:c.5462del	p.Pro1821HisfsTer74	p.P1821Hfs*74	ENST00000222270	NM_014727.1	1819	gaC/ga																																																																															
ERF	2077	MSKCC	GRCh37	19	42752691	42752691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	223	600	1	ENST00000222329.4:c.1573C>A	p.Leu525Ile	p.L525I	ENST00000222329	NM_006494.2	525	Ctc/Atc																																																																															
ERF	2077	MSKCC	GRCh37	19	42754595	42754595	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	176	646	2	ENST00000222329.4:c.145C>T	p.Gln49Ter	p.Q49*	ENST00000222329	NM_006494.2	49	Cag/Tag																																																																															
CIC	23152	MSKCC	GRCh37	19	42791513	42791513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	137	626	3	ENST00000575354.2:c.494C>T	p.Pro165Leu	p.P165L	ENST00000575354	NM_015125.3	165	cCg/cTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42792047	42792047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	123	566	0	ENST00000575354.2:c.851C>T	p.Thr284Met	p.T284M	ENST00000575354	NM_015125.3	284	aCg/aTg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868341	45868341	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	228	767	0	ENST00000391945.4:c.436T>C	p.Tyr146His	p.Y146H	ENST00000391945	NM_000400.3	146	Tac/Cac																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910264	50910264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	207	665	2	ENST00000440232.2:c.1519C>T	p.Arg507Cys	p.R507C	ENST00000440232	NM_002691.3	507	Cgc/Tgc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	167	550	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1210	233	831	7	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25536799	25536799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	226	623	3	ENST00000264709.3:c.55C>T	p.Arg19Trp	p.R19W	ENST00000264709	NM_175629.2	19	Cgg/Tgg																																																																															
ALK	238	MSKCC	GRCh37	2	30143052	30143052	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	221	785	1	ENST00000389048.3:c.474del	p.Glu160ArgfsTer26	p.E160Rfs*26	ENST00000389048	NM_004304.4	158	ccC/cc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46602891	46602891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	214	630	1	ENST00000263734.3:c.949G>A	p.Val317Met	p.V317M	ENST00000263734	NM_001430.4	317	Gtg/Atg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703653	47703653	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	139	475	0	ENST00000233146.2:c.2154del	p.Gln718HisfsTer2	p.Q718Hfs*2	ENST00000233146	NM_000251.2	718	cAa/ca																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026020	48026020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	179	436	1	ENST00000234420.5:c.898C>T	p.Arg300Trp	p.R300W	ENST00000234420	NM_000179.2	300	Cgg/Tgg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	110	510	4	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
CASP8	841	MSKCC	GRCh37	2	202149799	202149799	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	48	582	0	ENST00000358485.4:c.1245delT	p.Phe415LeufsTer26	p.F415Lfs*26	ENST00000358485	NM_001080125.1	414	Ttt/tt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812259	212812259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	143	423	2	ENST00000342788.4:c.317G>A	p.Arg106His	p.R106H	ENST00000342788	NM_005235.2	106	cGt/cAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306584	41306584	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	121	654	1	ENST00000373198.4:c.1075C>T	p.Arg359Ter	p.R359*	ENST00000373198	NM_133170.3	359	Cga/Tga																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264985	46264985	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	197	478	0	ENST00000371998.3:c.1860del	p.Lys620AsnfsTer18	p.K620Nfs*18	ENST00000371998		619	Aaa/aa																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42851212	42851212	+	splice_region_variant,intron_variant	Splice_Region	DEL	A	A	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	131	368	0	ENST00000398585.3:c.684-3del		p.X228_splice	ENST00000398585	NM_001135099.1	228																																																																																
RAC2	5880	MSKCC	GRCh37	22	37627348	37627348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1250	309	969	0	ENST00000249071.6:c.371A>C	p.Asp124Ala	p.D124A	ENST00000249071	NM_002872.4	124	gAc/gCc																																																																															
PPARG	5468	MSKCC	GRCh37	3	12421349	12421349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	269	749	0	ENST00000287820.6:c.229C>T	p.His77Tyr	p.H77Y	ENST00000287820	NM_015869.4	77	Cat/Tat																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434182	12434182	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1187529076		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	153	509	2	ENST00000287820.6:c.556del	p.Ser186ValfsTer47	p.S186Vfs*47	ENST00000287820	NM_015869.4	184	Aaa/aa																																																																															
RAF1	5894	MSKCC	GRCh37	3	12632469	12632469	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	127	500	0	ENST00000251849.4:c.1198A>G	p.Thr400Ala	p.T400A	ENST00000251849	NM_002880.3	400	Aca/Gca																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732996	30732996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934869		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	140	403	0	ENST00000359013.4:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000359013	NM_001024847.2	562	Cgc/Tgc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49935036	49935036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	157	693	2	ENST00000296474.3:c.1963G>A	p.Val655Ile	p.V655I	ENST00000296474	NM_002447.2	655	Gtc/Atc																																																																															
MITF	4286	MSKCC	GRCh37	3	69928380	69928380	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	106	321	0	ENST00000352241.4:c.200A>G	p.Gln67Arg	p.Q67R	ENST00000352241	NM_198159.2	67	cAg/cGg																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73108281	73108281	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	43	151	0	ENST00000356692.5:c.381G>T	p.Lys127Asn	p.K127N	ENST00000356692		127	aaG/aaT																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170009727	170009727	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	78	265	0	ENST00000295797.4:c.1289A>G	p.Tyr430Cys	p.Y430C	ENST00000295797	NM_002740.5	430	tAt/tGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	149	390	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430901	181430901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	164	713	0	ENST00000325404.1:c.758del	p.Pro253LeufsTer21	p.P253Lfs*21	ENST00000325404	NM_003106.3	251	agC/ag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156664	55156664	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	147	449	0	ENST00000257290.5:c.3065T>C	p.Leu1022Pro	p.L1022P	ENST00000257290	NM_006206.4	1022	cTg/cCg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467573	66467573	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	99	408	0	ENST00000273854.3:c.696del	p.Lys232AsnfsTer36	p.K232Nfs*36	ENST00000273854	NM_004439.5	232	aaA/aa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	173	470	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534439	187534441	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	92	431	0	ENST00000441802.2:c.9285_9287del	p.Leu3096del	p.L3096del	ENST00000441802	NM_005245.3	3095	ctTCTc/ctc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630266	187630266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	78	535	0	ENST00000441802.2:c.716G>A	p.Ser239Asn	p.S239N	ENST00000441802	NM_005245.3	239	aGc/aAc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	243	570	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175510	112175510	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	95	353	0	ENST00000257430.4:c.4219A>G	p.Ser1407Gly	p.S1407G	ENST00000257430	NM_000038.5	1407	Agt/Ggt																																																																															
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	97	326	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048668	180048668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	206	571	3	ENST00000261937.6:c.1894C>T	p.Arg632Cys	p.R632C	ENST00000261937	NM_182925.4	632	Cgc/Tgc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800564	32800564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	156	708	1	ENST00000374899.4:c.983C>T	p.Ala328Val	p.A328V	ENST00000374899	NM_018833.2	328	gCg/gTg																																																																															
CCND3	896	MSKCC	GRCh37	6	41903706	41903706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	132	576	0	ENST00000372991.4:c.851C>T	p.Pro284Leu	p.P284L	ENST00000372991	NM_001760.3	284	cCt/cTt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967244	93967244	+	splice_region_variant,intron_variant	Splice_Region	DEL	A	A	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	47	284	0	ENST00000369303.4:c.2111-3del		p.X704_splice	ENST00000369303	NM_004440.3	704																																																																																
ROS1	6098	MSKCC	GRCh37	6	117706974	117706974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	164	589	0	ENST00000368508.3:c.2176G>A	p.Val726Ile	p.V726I	ENST00000368508	NM_002944.2	726	Gtt/Att																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129201	152129201	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	213	653	0	ENST00000206249.3:c.154T>C	p.Tyr52His	p.Y52H	ENST00000206249	NM_000125.3	52	Tac/Cac																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157510806	157510806	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	129	505	2	ENST00000346085.5:c.3586del	p.Gln1196SerfsTer15	p.Q1196Sfs*15	ENST00000346085	NM_020732.3	1194	aCc/ac																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	121	357	1	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
SMO	6608	MSKCC	GRCh37	7	128851987	128851987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	124	660	1	ENST00000249373.3:c.2059C>T	p.Pro687Ser	p.P687S	ENST00000249373	NM_005631.4	687	Ccg/Tcg																																																																															
RHEB	6009	MSKCC	GRCh37	7	151168649	151168649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	194	516	0	ENST00000262187.5:c.318G>T	p.Met106Ile	p.M106I	ENST00000262187	NM_005614.3	106	atG/atT																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285869	38285869	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	195	646	0	ENST00000425967.3:c.541+1G>A		p.X181_splice	ENST00000425967	NM_001174067.1	181																																																																																
PRDM14	63978	MSKCC	GRCh37	8	70982031	70982031	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	207	717	0	ENST00000276594.2:c.65G>C	p.Ser22Thr	p.S22T	ENST00000276594	NM_024504.3	22	aGc/aCc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117878926	117878926	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	127	422	0	ENST00000297338.2:c.43G>C	p.Ala15Pro	p.A15P	ENST00000297338	NM_006265.2	15	Gcc/Ccc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737415	145737415	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	170	616	0	ENST00000428558.2:c.3272A>G	p.Gln1091Arg	p.Q1091R	ENST00000428558	NM_004260.3	1091	cAg/cGg																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006224	22006224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	151	508	0	ENST00000276925.6:c.179G>A	p.Arg60His	p.R60H	ENST00000276925	NM_004936.3	60	cGc/cAc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87322805	87322805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	103	477	2	ENST00000277120.3:c.406C>T	p.Arg136Cys	p.R136C	ENST00000277120		136	Cgt/Tgt																																																																															
SYK	6850	MSKCC	GRCh37	9	93624552	93624552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	144	623	0	ENST00000375746.1:c.643C>T	p.His215Tyr	p.H215Y	ENST00000375746	NM_001174167.1	215	Cac/Tac																																																																															
SYK	6850	MSKCC	GRCh37	9	93624623	93624623	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	138	434	2	ENST00000375746.1:c.714G>A	p.Trp238Ter	p.W238*	ENST00000375746	NM_001174167.1	238	tgG/tgA																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900239	101900239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	132	492	0	ENST00000374994.4:c.673C>T	p.Arg225Trp	p.R225W	ENST00000374994	NM_004612.2	225	Cgg/Tgg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137293514	137293514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55836231		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	203	773	0	ENST00000481739.1:c.65C>T	p.Pro22Leu	p.P22L	ENST00000481739	NM_002957.4	22	cCg/cTg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	180	306	0	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228063	53228063	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	200	320	0	ENST00000375401.3:c.2251T>C	p.Tyr751His	p.Y751H	ENST00000375401	NM_004187.3	751	Tat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	116	434	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030585	47030585	+	intron_variant	Intron	SNP	T	T	G			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	180	297	1	ENST00000329236.7:c.201+1688T>G		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
BAP1	8314	MSKCC	GRCh37	3	52440379	52440379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	180	320	1	ENST00000460680.1:c.673G>A	p.Asp225Asn	p.D225N	ENST00000460680	NM_004656.3	225	Gac/Aac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270177	66270177	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	36	322	0	ENST00000273854.3:c.1705C>T	p.Gln569Ter	p.Q569*	ENST00000273854	NM_004439.5	569	Caa/Taa																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115262336	115262336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	88	402	0	ENST00000438362.2:c.2218G>A	p.Asp740Asn	p.D740N	ENST00000438362	NM_001242891.1	740	Gat/Aat																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206651642	206651642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1521	130	742	0	ENST00000367120.3:c.952C>A	p.Gln318Lys	p.Q318K	ENST00000367120	NM_014002.3	318	Cag/Aag																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741925	17741925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	46	185	0	ENST00000250003.3:c.596C>T	p.Ala199Val	p.A199V	ENST00000250003	NM_002478.4	199	gCg/gTg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64132921	64132922	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	223	575	0	ENST00000334205.4:c.1060dup	p.Arg354ProfsTer16	p.R354Pfs*16	ENST00000334205	NM_003942.2	352	gac/gaCc																																																																															
MSI1	4440	MSKCC	GRCh37	12	120784063	120784064	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	133	771	3	ENST00000257552.2:c.921_922delinsAA	p.Phe307_Leu308delinsLeuMet	p.F307_L308delinsLM	ENST00000257552	NM_002442.3	307	ttCCtg/ttAAtg																																																																															
STK11	6794	MSKCC	GRCh37	19	1218415	1218415	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C	rs112675807		P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	236	524	0	ENST00000326873.7:c.291-1G>C		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10610081	10610081	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	248	605	0	ENST00000171111.5:c.629A>T	p.His210Leu	p.H210L	ENST00000171111	NM_203500.1	210	cAt/cTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145811	11145811	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	178	474	0	ENST00000344626.4:c.4170+3A>G		p.X1390_splice	ENST00000344626	NM_003072.3	1390																																																																																
CUL3	8452	MSKCC	GRCh37	2	225360680	225360680	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	35	261	0	ENST00000264414.4:c.1711G>C	p.Asp571His	p.D571H	ENST00000264414	NM_003590.4	571	Gat/Cat																																																																															
KIT	3815	MSKCC	GRCh37	4	55599361	55599361	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	78	341	0	ENST00000288135.5:c.2484+3G>A		p.X828_splice	ENST00000288135	NM_000222.2	828																																																																																
KDR	3791	MSKCC	GRCh37	4	55991459	55991459	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	78	510	0	ENST00000263923.4:c.2T>C	p.Met1?	p.M1?	ENST00000263923	NM_002253.2	1	aTg/aCg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512455	149512455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	177	380	1	ENST00000261799.4:c.985G>A	p.Glu329Lys	p.E329K	ENST00000261799	NM_002609.3	329	Gag/Aag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509275	106509275	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	177	437	0	ENST00000359195.3:c.1269G>T	p.Leu423Phe	p.L423F	ENST00000359195	NM_002649.2	423	ttG/ttT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520081	106520081	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	78	259	0	ENST00000359195.3:c.2509G>C	p.Asp837His	p.D837H	ENST00000359195	NM_002649.2	837	Gat/Cat																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0015590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	66	238	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																															
MED12	9968	MSKCC	GRCh37	X	70346188	70346188	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0015590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	371	369	0	ENST00000374080.3:c.2542-3C>G		p.X848_splice	ENST00000374080		848																																																																																
ID3	3399	MSKCC	GRCh37	1	23885731	23885731	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	110	392	0	ENST00000374561.5:c.187C>G	p.Gln63Glu	p.Q63E	ENST00000374561	NM_002167.4	63	Cag/Gag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118392792	118392792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	62	358	0	ENST00000534358.1:c.11824G>A	p.Glu3942Lys	p.E3942K	ENST00000534358	NM_005933.3	3942	Gaa/Aaa																																																																															
CBL	867	MSKCC	GRCh37	11	119145657	119145657	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	71	226	0	ENST00000264033.4:c.863C>G	p.Pro288Arg	p.P288R	ENST00000264033	NM_005188.3	288	cCt/cGt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32968900	32968900	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	61	258	3	ENST00000380152.3:c.9331G>T	p.Glu3111Ter	p.E3111*	ENST00000380152		3111	Gag/Tag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476251	88476251	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	126	406	0	ENST00000360948.2:c.1881G>T	p.Lys627Asn	p.K627N	ENST00000360948	NM_001012338.2	627	aaG/aaT																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770022	56770022	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	58	294	0	ENST00000337432.4:c.18C>A	p.Phe6Leu	p.F6L	ENST00000337432	NM_058216.2	6	ttC/ttA																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735501	40735501	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	65	418	0	ENST00000373198.4:c.3372G>C	p.Glu1124Asp	p.E1124D	ENST00000373198	NM_133170.3	1124	gaG/gaC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877802	151877802	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	70	164	0	ENST00000262189.6:c.7143G>C	p.Leu2381Phe	p.L2381F	ENST00000262189	NM_170606.2	2381	ttG/ttC																																																																															
LYN	4067	MSKCC	GRCh37	8	56910902	56910902	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0015590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	68	284	0	ENST00000519728.1:c.1051-3C>T		p.X351_splice	ENST00000519728	NM_002350.3	351																																																																																
MET	4233	MSKCC	GRCh37	7	116412033	116412046	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTCCAGAAGGTA	TTTTCCAGAAGGTA	G			P-0015590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	443	480	0	ENST00000397752.3:c.3018_3028+3delinsG		p.X1006_splice	ENST00000397752	NM_000245.2	1006																																																																																
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0015978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	246	756	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
SDHB	6390	MSKCC	GRCh37	1	17350526	17350526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	91	578	0	ENST00000375499.3:c.584G>A	p.Ser195Asn	p.S195N	ENST00000375499	NM_003000.2	195	aGc/aAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088813	27088813	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0015978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	63	486	0	ENST00000324856.7:c.2419+3C>G		p.X807_splice	ENST00000324856	NM_006015.4	807																																																																																
FUBP1	8880	MSKCC	GRCh37	1	78430918	78430918	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A	rs201322936		P-0015978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	151	450	1	ENST00000370768.2:c.474-3C>T		p.X158_splice	ENST00000370768	NM_003902.3	158																																																																																
AKT3	10000	MSKCC	GRCh37	1	243716174	243716174	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	83	937	1	ENST00000263826.5:c.1020G>T	p.Met340Ile	p.M340I	ENST00000263826	NM_005465.4	340	atG/atT																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588868	69588868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	149	638	0	ENST00000168712.1:c.368G>A	p.Arg123Gln	p.R123Q	ENST00000168712	NM_002007.2	123	cGg/cAg																																																																															
SESN3	143686	MSKCC	GRCh37	11	94911069	94911069	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	46	640	0	ENST00000536441.1:c.1061A>C	p.Tyr354Ser	p.Y354S	ENST00000536441	NM_144665.3	354	tAt/tCt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028614	12028614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	46	375	0	ENST00000353533.5:c.817G>A	p.Glu273Lys	p.E273K	ENST00000353533	NM_003010.3	273	Gaa/Aaa																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45872404	45872404	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0015978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	89	550	0	ENST00000391945.4:c.107G>T	p.Gly36Val	p.G36V	ENST00000391945	NM_000400.3	36	gGt/gTt																																																																															
BARD1	580	MSKCC	GRCh37	2	215634015	215634015	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	51	671	0	ENST00000260947.4:c.1336T>A	p.Tyr446Asn	p.Y446N	ENST00000260947	NM_000465.2	446	Tac/Aac																																																																															
INHA	3623	MSKCC	GRCh37	2	220439938	220439938	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	100	934	0	ENST00000243786.2:c.791G>C	p.Arg264Thr	p.R264T	ENST00000243786	NM_002191.3	264	aGa/aCa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103816	47103816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	53	416	0	ENST00000409792.3:c.6130G>C	p.Ala2044Pro	p.A2044P	ENST00000409792	NM_014159.6	2044	Gct/Cct																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168678	32168678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	72	658	0	ENST00000375023.3:c.4245G>A	p.Met1415Ile	p.M1415I	ENST00000375023	NM_004557.3	1415	atG/atA																																																																															
HGF	3082	MSKCC	GRCh37	7	81372740	81372740	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	67	446	0	ENST00000222390.5:c.794G>C	p.Gly265Ala	p.G265A	ENST00000222390	NM_000601.4	265	gGc/gCc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69011970	69011970	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	172	924	0	ENST00000288368.4:c.2607C>G	p.Ser869Arg	p.S869R	ENST00000288368	NM_024870.2	869	agC/agG																																																																															
SYK	6850	MSKCC	GRCh37	9	93606252	93606252	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	172	636	0	ENST00000375746.1:c.72G>T	p.Glu24Asp	p.E24D	ENST00000375746	NM_001174167.1	24	gaG/gaT																																																																															
AR	367	MSKCC	GRCh37	X	66941807	66941807	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0015978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	70	257	1	ENST00000374690.3:c.2449+2T>A		p.X817_splice	ENST00000374690	NM_000044.3	817																																																																																
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	413	654	2	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
EP300	2033	MSKCC	GRCh37	22	41543904	41543904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	321	604	1	ENST00000263253.7:c.2195C>T	p.Pro732Leu	p.P732L	ENST00000263253	NM_001429.3	732	cCt/cTt																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241861	72241861	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	133	297	0	ENST00000357731.5:c.529C>A	p.Pro177Thr	p.P177T	ENST00000357731	NM_173808.2	177	Cca/Aca																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120471694	120471694	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	133	406	0	ENST00000256646.2:c.3797A>T	p.Asn1266Ile	p.N1266I	ENST00000256646	NM_024408.3	1266	aAc/aTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720663	89720663	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	147	220	0	ENST00000371953.3:c.814delC	p.His272ThrfsTer4	p.H272Tfs*4	ENST00000371953	NM_000314.4	272	Cac/ac																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94201062	94201062	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	39	268	0	ENST00000323929.3:c.1018-3G>C		p.X340_splice	ENST00000323929	NM_005591.3	340																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49443821	49443821	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	95	621	0	ENST00000301067.7:c.3550G>T	p.Glu1184Ter	p.E1184*	ENST00000301067	NM_003482.3	1184	Gaa/Taa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32918784	32918784	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	134	415	0	ENST00000380152.3:c.6931C>G	p.Pro2311Ala	p.P2311A	ENST00000380152		2311	Cca/Gca																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777863	3777863	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	494	819	0	ENST00000262367.5:c.7185A>G	p.Ile2395Met	p.I2395M	ENST00000262367	NM_004380.2	2395	atA/atG																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778671	3778671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	141	510	0	ENST00000262367.5:c.6377G>A	p.Gly2126Asp	p.G2126D	ENST00000262367	NM_004380.2	2126	gGc/gAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3801796	3801796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	300	483	0	ENST00000262367.5:c.3710G>A	p.Cys1237Tyr	p.C1237Y	ENST00000262367	NM_004380.2	1237	tGt/tAt																																																																															
CALR	811	MSKCC	GRCh37	19	13051704	13051704	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	241	392	0	ENST00000316448.5:c.960+3G>A		p.X320_splice	ENST00000316448	NM_004343.3	320																																																																																
REL	5966	MSKCC	GRCh37	2	61145544	61145544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	34	352	0	ENST00000295025.8:c.656G>A	p.Arg219His	p.R219H	ENST00000295025	NM_002908.2	219	cGt/cAt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99136407	99136407	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	72	126	0	ENST00000074304.5:c.-103-2A>T		p.X35_splice	ENST00000074304	NM_001134224.1	35																																																																																
CXCR4	7852	MSKCC	GRCh37	2	136872474	136872474	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	130	193	0	ENST00000241393.3:c.1024A>T	p.Thr342Ser	p.T342S	ENST00000241393	NM_003467.2	342	Act/Tct																																																																															
AURKA	6790	MSKCC	GRCh37	20	54948528	54948528	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	169	471	0	ENST00000312783.6:c.790C>G	p.Leu264Val	p.L264V	ENST00000312783	NM_198436.1	264	Ctt/Gtt																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62319369	62319369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	226	681	0	ENST00000508582.2:c.1633G>A	p.Asp545Asn	p.D545N	ENST00000508582		545	Gat/Aat																																																																															
EP300	2033	MSKCC	GRCh37	22	41556729	41556729	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	T			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	187	355	0	ENST00000263253.7:c.3671+3A>T		p.X1224_splice	ENST00000263253	NM_001429.3	1224																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52597510	52597510	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	190	297	0	ENST00000394830.3:c.3801-1G>A		p.X1267_splice	ENST00000394830	NM_018313.4	1267																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134825421	134825421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	187	506	0	ENST00000398015.3:c.937G>T	p.Asp313Tyr	p.D313Y	ENST00000398015	NM_004441.4	313	Gac/Tac																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430401	181430401	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	282	677	0	ENST00000325404.1:c.253A>G	p.Thr85Ala	p.T85A	ENST00000325404	NM_003106.3	85	Acg/Gcg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139821	55139821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	238	412	0	ENST00000257290.5:c.1482G>T	p.Glu494Asp	p.E494D	ENST00000257290	NM_006206.4	494	gaG/gaT																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873615	35873615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	318	283	0	ENST00000303115.3:c.571C>A	p.Leu191Met	p.L191M	ENST00000303115	NM_002185.3	191	Ctg/Atg																																																																															
IRF4	3662	MSKCC	GRCh37	6	393345	393345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	227	396	1	ENST00000380956.4:c.193G>A	p.Glu65Lys	p.E65K	ENST00000380956	NM_001195286.1	65	Gag/Aag																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206801	162206801	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	A			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	277	435	0	ENST00000366898.1:c.871+3A>T		p.X291_splice	ENST00000366898	NM_004562.2	291																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8339019	8339019	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	98	381	1	ENST00000356435.5:c.5282A>T	p.Glu1761Val	p.E1761V	ENST00000356435		1761	gAa/gTa																																																																															
TEK	7010	MSKCC	GRCh37	9	27213569	27213569	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	296	498	0	ENST00000380036.4:c.2965C>G	p.Gln989Glu	p.Q989E	ENST00000380036	NM_000459.3	989	Caa/Gaa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399932	139399932	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	414	713	0	ENST00000277541.6:c.4416C>G	p.Cys1472Trp	p.C1472W	ENST00000277541	NM_017617.3	1472	tgC/tgG																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0016001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	418	389	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288996	212288996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	159	539	0	ENST00000342788.4:c.2750G>A	p.Gly917Glu	p.G917E	ENST00000342788	NM_005235.2	917	gGa/gAa																																																																															
PAK1	5058	MSKCC	GRCh37	11	77043802	77043802	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	156	567	0	ENST00000356341.3:c.1524G>C	p.Lys508Asn	p.K508N	ENST00000356341	NM_002576.4	508	aaG/aaC																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158610	26158610	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	82	294	0	ENST00000289316.2:c.213C>G	p.Phe71Leu	p.F71L	ENST00000289316	NM_138720.2	71	ttC/ttG																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608264	28608264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	154	560	1	ENST00000241453.7:c.1792G>A	p.Glu598Lys	p.E598K	ENST00000241453	NM_004119.2	598	Gaa/Aaa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2225391	2225391	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	149	585	0	ENST00000398665.3:c.3601G>C	p.Glu1201Gln	p.E1201Q	ENST00000398665	NM_032482.2	1201	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0016001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	119	420	1	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
RFWD2	64326	MSKCC	GRCh37	1	176104152	176104152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	110	382	0	ENST00000367669.3:c.962C>T	p.Ser321Leu	p.S321L	ENST00000367669	NM_022457.5	321	tCa/tTa																																																																															
SETD8	387893	MSKCC	GRCh37	12	123879631	123879631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	139	442	0	ENST00000330479.4:c.327G>A	p.Met109Ile	p.M109I	ENST00000330479	NM_020382.3	109	atG/atA																																																																															
BLM	641	MSKCC	GRCh37	15	91354497	91354497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	121	482	0	ENST00000355112.3:c.3937G>A	p.Glu1313Lys	p.E1313K	ENST00000355112	NM_000057.2	1313	Gag/Aag																																																																															
BLM	641	MSKCC	GRCh37	15	91354565	91354565	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	153	630	0	ENST00000355112.3:c.4005G>C	p.Lys1335Asn	p.K1335N	ENST00000355112	NM_000057.2	1335	aaG/aaC																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782341	56782341	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0016001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	108	385	0	ENST00000308159.5:c.179+3G>A		p.X60_splice	ENST00000308159	NM_014669.4	60																																																																																
CDH1	999	MSKCC	GRCh37	16	68845718	68845719	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAC			P-0016001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	133	599	0	ENST00000261769.5:c.966_969dup	p.Gly324HisfsTer27	p.G324Hfs*27	ENST00000261769	NM_004360.3	322	aac/aACACac																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453318	40453318	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	156	544	0	ENST00000345506.4:c.1015C>G	p.Pro339Ala	p.P339A	ENST00000345506	NM_003152.3	339	Cct/Gct																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591925	48591925	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	75	345	0	ENST00000342988.3:c.1088G>C	p.Cys363Ser	p.C363S	ENST00000342988	NM_005359.5	363	tGt/tCt																																																																															
ERF	2077	MSKCC	GRCh37	19	42753362	42753362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	189	803	1	ENST00000222329.4:c.902C>T	p.Ser301Phe	p.S301F	ENST00000222329	NM_006494.2	301	tCc/tTc																																																																															
BCL6	604	MSKCC	GRCh37	3	187440274	187440274	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	81	321	0	ENST00000232014.4:c.2093T>C	p.Leu698Pro	p.L698P	ENST00000232014	NM_001130845.1	698	cTg/cCg																																																																															
E2F3	1871	MSKCC	GRCh37	6	20490396	20490396	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0016001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	115	347	0	ENST00000346618.3:c.1136-3C>G		p.X379_splice	ENST00000346618	NM_001949.4	379																																																																																
MET	4233	MSKCC	GRCh37	7	116339605	116339605	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	86	245	0	ENST00000397752.3:c.467C>G	p.Ser156Trp	p.S156W	ENST00000397752	NM_000245.2	156	tCg/tGg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945114	151945114	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	40	335	0	ENST00000262189.6:c.2405delC	p.Ser802Ter	p.S802*	ENST00000262189	NM_170606.2	802	tCa/ta																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127920586	127920586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	187	653	0	ENST00000373547.4:c.313G>A	p.Asp105Asn	p.D105N	ENST00000373547	NM_002721.4	105	Gat/Aat																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	138	272	1				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	101	517	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	110	615	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	353	625	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	46	594	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495384	56495384	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	50	665	0	ENST00000267101.3:c.3574G>C	p.Asp1192His	p.D1192H	ENST00000267101	NM_001982.3	1192	Gat/Cat																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307261	118307261	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	14	152	0	ENST00000534358.1:c.34C>G	p.Arg12Gly	p.R12G	ENST00000534358	NM_005933.3	12	Cga/Gga																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022677	12022677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	34	520	0	ENST00000396373.4:c.783G>C	p.Glu261Asp	p.E261D	ENST00000396373	NM_001987.4	261	gaG/gaC																																																																															
RECQL	5965	MSKCC	GRCh37	12	21628639	21628639	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	57	728	0	ENST00000421138.2:c.1069C>G	p.His357Asp	p.H357D	ENST00000421138		357	Cat/Gat																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701862	43701862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	42	426	0	ENST00000382044.4:c.5383G>A	p.Asp1795Asn	p.D1795N	ENST00000382044	NM_001141980.1	1795	Gat/Aat																																																																															
CDH1	999	MSKCC	GRCh37	16	68856017	68856017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	58	740	0	ENST00000261769.5:c.1825C>T	p.Pro609Ser	p.P609S	ENST00000261769	NM_004360.3	609	Cct/Tct																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821576	72821619	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCAGGCAGTGGTACGAGCCGCCGCCGCCGCCGCCGCCGCCAC	CGCCAGGCAGTGGTACGAGCCGCCGCCGCCGCCGCCGCCGCCAC	-			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	69	171	0	ENST00000268489.5:c.10556_10599del	p.Gly3519ValfsTer37	p.G3519Vfs*37	ENST00000268489	NM_006885.3	3519	gGTGGCGGCGGCGGCGGCGGCGGCGGCTCGTACCACTGCCTGGCG/g																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221756	36221756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	70	700	1	ENST00000222270.7:c.5425G>A	p.Ala1809Thr	p.A1809T	ENST00000222270	NM_014727.1	1809	Gcc/Acc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52661374	52661374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	27	405	0	ENST00000394830.3:c.1456G>A	p.Glu486Lys	p.E486K	ENST00000394830	NM_018313.4	486	Gag/Aag																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523745	176523745	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	C			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	41	481	0	ENST00000292408.4:c.2153+3G>C		p.X718_splice	ENST00000292408	NM_213647.1	718																																																																																
STAG2	10735	MSKCC	GRCh37	X	123199793	123199793	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	106	363	0	ENST00000218089.9:c.2093A>T	p.His698Leu	p.H698L	ENST00000218089	NM_001042749.1	698	cAt/cTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	264	628	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1612	37	670	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1396	138	635	0	ENST00000269305.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTc/aCc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15971325	15971325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	202	544	0	ENST00000268712.3:c.4624G>A	p.Val1542Met	p.V1542M	ENST00000268712	NM_006311.3	1542	Gtg/Atg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	110	395	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1201	190	570	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495023	56495023	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs2271188		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1271	206	586	0	ENST00000267101.3:c.3380G>A	p.Arg1127His	p.R1127H	ENST00000267101	NM_001982.3	1127	cGc/cAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	689	364	1	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	438	586	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1197	512	770	15	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	125	454	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1450	689	968	0	ENST00000269305.4:c.643A>T	p.Ser215Cys	p.S215C	ENST00000269305	NM_001126112.2	215	Agt/Tgt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	274	531	6	ENST00000264010.4:c.2070delA	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	428	626	1	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																															
RB1	5925	MSKCC	GRCh37	13	49030479	49030479	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	398	644	2	ENST00000267163.4:c.1959delA	p.Val654CysfsTer4	p.V654Cfs*4	ENST00000267163	NM_000321.2	652	Aaa/aa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	201	488	2	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	478	823	2	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	497	647	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	524	644	3	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1595	342	804	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	423	517	16	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	593	709	4	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288934	212288934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	239	575	2	ENST00000342788.4:c.2812C>T	p.Arg938Cys	p.R938C	ENST00000342788	NM_005235.2	938	Cgt/Tgt																																																																															
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	482	651	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148514998	148515000	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1291	280	636	0	ENST00000320356.2:c.1209_1211del	p.Glu404del	p.E404del	ENST00000320356	NM_004456.4	403	gaAGAg/gag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	696	611	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39937104	39937104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	611	725	2	ENST00000378444.4:c.79G>A	p.Glu27Lys	p.E27K	ENST00000378444	NM_001123385.1	27	Gaa/Aaa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1245	344	655	2	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64132927	64132927	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145356210		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1237	169	628	0	ENST00000334205.4:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000334205	NM_003942.2	354	cGa/cAa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922238	39922238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	130	394	0	ENST00000378444.4:c.3934G>A	p.Ala1312Thr	p.A1312T	ENST00000378444	NM_001123385.1	1312	Gca/Aca																																																																															
AR	367	MSKCC	GRCh37	X	66765826	66765826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1786	432	1009	3	ENST00000374690.3:c.838C>T	p.Arg280Cys	p.R280C	ENST00000374690	NM_000044.3	280	Cgt/Tgt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100302	157100302	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	275	455	0	ENST00000346085.5:c.1243delG	p.Ala415ProfsTer15	p.A415Pfs*15	ENST00000346085	NM_020732.3	413	tcG/tc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37045935	37045935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	1020	689	2	ENST00000231790.2:c.350C>T	p.Thr117Met	p.T117M	ENST00000231790	NM_000249.3	117	aCg/aTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396482	139396482	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1633	148	728	1	ENST00000277541.6:c.5443del	p.Asp1815ThrfsTer72	p.D1815Tfs*72	ENST00000277541	NM_017617.3	1815	Gac/ac																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164781	36164781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1306	319	757	0	ENST00000300305.3:c.1094G>A	p.Gly365Asp	p.G365D	ENST00000300305		365	gGc/gAc																																																																															
B2M	567	MSKCC	GRCh37	15	45003782	45003782	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	236	449	0	ENST00000558401.1:c.38T>C	p.Leu13Pro	p.L13P	ENST00000558401	NM_004048.2	13	cTc/cCc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61726051	61726052	+	splice_region_variant,intron_variant	Splice_Region	DEL	AA	AA	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	536	665	2	ENST00000401558.2:c.591-4_591-3delTT		p.X197_splice	ENST00000401558	NM_003400.3	197																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	477	669	4	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1233	786	961	12	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939260	71939260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1293	310	756	1	ENST00000298229.2:c.209G>A	p.Arg70His	p.R70H	ENST00000298229	NM_001567.3	70	cGc/cAc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	483	825	13	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1599	414	944	5	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781599	9781599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1591	234	793	0	ENST00000377346.4:c.1909G>A	p.Ala637Thr	p.A637T	ENST00000377346	NM_005026.3	637	Gcc/Acc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937220	36937220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	527	737	1	ENST00000361632.4:c.1099C>T	p.Arg367Trp	p.R367W	ENST00000361632		367	Cgg/Tgg																																																																															
MPL	4352	MSKCC	GRCh37	1	43812216	43812216	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1798	215	862	0	ENST00000372470.3:c.1081A>G	p.Ile361Val	p.I361V	ENST00000372470	NM_005373.2	361	Att/Gtt																																																																															
MPL	4352	MSKCC	GRCh37	1	43812531	43812531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1337	359	664	1	ENST00000372470.3:c.1234C>T	p.His412Tyr	p.H412Y	ENST00000372470	NM_005373.2	412	Cac/Tac																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733668	85733668	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	81	517	0	ENST00000370580.1:c.347-3T>A		p.X116_splice	ENST00000370580	NM_003921.4	116																																																																																
DDR2	4921	MSKCC	GRCh37	1	162729588	162729588	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	356	545	0	ENST00000367921.3:c.674T>C	p.Met225Thr	p.M225T	ENST00000367921	NM_006182.2	225	aTg/aCg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176153831	176153831	+	splice_region_variant,intron_variant	Splice_Region	DEL	A	A	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	125	417	2	ENST00000367669.3:c.408-3del		p.X136_splice	ENST00000367669	NM_022457.5	136																																																																																
RFWD2	64326	MSKCC	GRCh37	1	176175799	176175799	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1115	272	586	0	ENST00000367669.3:c.316C>A	p.Leu106Ile	p.L106I	ENST00000367669	NM_022457.5	106	Cta/Ata																																																																															
CDC73	79577	MSKCC	GRCh37	1	193205393	193205393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	210	480	0	ENST00000367435.3:c.1324G>A	p.Val442Ile	p.V442I	ENST00000367435	NM_024529.4	442	Gtt/Att																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206646659	206646659	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1652	88	743	0	ENST00000367120.3:c.87+2T>C		p.X29_splice	ENST00000367120	NM_014002.3	29																																																																																
RET	5979	MSKCC	GRCh37	10	43609063	43609063	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	524	729	0	ENST00000355710.3:c.1819G>T	p.Gly607Cys	p.G607C	ENST00000355710	NM_020975.4	607	Ggc/Tgc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67197056	67197056	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1348	110	630	1	ENST00000312629.5:c.299T>A	p.Val100Asp	p.V100D	ENST00000312629	NM_003952.2	100	gTc/gAc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	404743	404743	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	132	387	0	ENST00000399788.2:c.4451T>C	p.Met1484Thr	p.M1484T	ENST00000399788	NM_001042603.1	1484	aTg/aCg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46211671	46211671	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	281	378	0	ENST00000334344.6:c.637A>G	p.Thr213Ala	p.T213A	ENST00000334344	NM_152641.2	213	Act/Gct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420661	49420661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1248	184	571	2	ENST00000301067.7:c.15088C>T	p.Arg5030Cys	p.R5030C	ENST00000301067	NM_003482.3	5030	Cgt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432462	49432462	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1710	128	821	0	ENST00000301067.7:c.8677A>G	p.Thr2893Ala	p.T2893A	ENST00000301067	NM_003482.3	2893	Act/Gct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1325	388	695	3	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448480	49448480	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1240	356	653	0	ENST00000301067.7:c.231del	p.His77GlnfsTer53	p.H77Qfs*53	ENST00000301067	NM_003482.3	77	caC/ca																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856322	111856323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	46	131	0	ENST00000341259.2:c.377dup	p.Pro127AlafsTer45	p.P127Afs*45	ENST00000341259	NM_005475.2	125	gcc/gCcc																																																																															
RB1	5925	MSKCC	GRCh37	13	48937095	48937095	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	143	329	0	ENST00000267163.4:c.861+2T>C		p.X287_splice	ENST00000267163	NM_000321.2	287																																																																																
CYSLTR2	57105	MSKCC	GRCh37	13	49281749	49281750	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1691	458	856	0	ENST00000282018.3:c.796_797del	p.Leu266GlufsTer19	p.L266Efs*19	ENST00000282018	NM_020377.2	266	CTg/g																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1876	429	1014	10	ENST00000294008.3:c.1406delC	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830517	72830517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1527	120	661	0	ENST00000268489.5:c.6064T>C	p.Tyr2022His	p.Y2022H	ENST00000268489	NM_006885.3	2022	Tac/Cac																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351595	89351595	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1519	646	848	0	ENST00000301030.4:c.1355del	p.Asn452IlefsTer3	p.N452Ifs*3	ENST00000301030	NM_001256183.1	452	aAt/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7574035	7574035	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1416	77	701	0	ENST00000269305.4:c.994-2A>T		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
NCOR1	9611	MSKCC	GRCh37	17	15974932	15974932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	236	559	0	ENST00000268712.3:c.3943C>T	p.Pro1315Ser	p.P1315S	ENST00000268712	NM_006311.3	1315	Ccc/Tcc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682480	37682480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	476	627	1	ENST00000447079.4:c.3671C>T	p.Ala1224Val	p.A1224V	ENST00000447079	NM_015083.1	1224	gCa/gTa																																																																															
EZH1	2145	MSKCC	GRCh37	17	40865396	40865396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1495	407	820	0	ENST00000428826.2:c.1035G>T	p.Lys345Asn	p.K345N	ENST00000428826		345	aaG/aaT																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78858829	78858829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1259	346	698	1	ENST00000306801.3:c.1864G>A	p.Ala622Thr	p.A622T	ENST00000306801	NM_020761.2	622	Gcc/Acc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395764	45395764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	450	533	0	ENST00000262160.6:c.370C>T	p.Pro124Ser	p.P124S	ENST00000262160	NM_005901.5	124	Cca/Tca																																																																															
MALT1	10892	MSKCC	GRCh37	18	56367783	56367783	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1291	122	630	0	ENST00000348428.3:c.609G>A	p.Trp203Ter	p.W203*	ENST00000348428	NM_006785.3	203	tgG/tgA																																																																															
STK11	6794	MSKCC	GRCh37	19	1226528	1226528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1317	645	866	1	ENST00000326873.7:c.1184C>T	p.Thr395Ile	p.T395I	ENST00000326873	NM_000455.4	395	aCa/aTa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622138	1622138	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	259	575	0	ENST00000344749.5:c.737C>A	p.Pro246Gln	p.P246Q	ENST00000344749	NM_001136139.2	246	cCg/cAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244322	5244322	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1908	137	880	0	ENST00000357368.4:c.1160A>G	p.Tyr387Cys	p.Y387C	ENST00000357368	NM_002850.3	387	tAc/tGc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602329	10602329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1753	94	807	1	ENST00000171111.5:c.1249G>A	p.Gly417Arg	p.G417R	ENST00000171111	NM_203500.1	417	Ggg/Agg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271583	15271583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1535	806	1044	0	ENST00000263388.2:c.6856G>A	p.Ala2286Thr	p.A2286T	ENST00000263388	NM_000435.2	2286	Gca/Aca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276615	15276615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	515	651	2	ENST00000263388.2:c.5650G>A	p.Ala1884Thr	p.A1884T	ENST00000263388	NM_000435.2	1884	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216443	36216443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1932	248	891	0	ENST00000222270.7:c.3706C>T	p.Pro1236Ser	p.P1236S	ENST00000222270	NM_014727.1	1236	Ccc/Tcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218414	36218414	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1393	115	650	0	ENST00000222270.7:c.4193A>G	p.Gln1398Arg	p.Q1398R	ENST00000222270	NM_014727.1	1398	cAg/cGg																																																																															
AKT2	208	MSKCC	GRCh37	19	40739798	40739798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1526	399	842	1	ENST00000392038.2:c.1427C>T	p.Ser476Leu	p.S476L	ENST00000392038	NM_001626.4	476	tCg/tTg																																																																															
AKT2	208	MSKCC	GRCh37	19	40741986	40741986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1382	355	808	0	ENST00000392038.2:c.986G>A	p.Arg329Gln	p.R329Q	ENST00000392038	NM_001626.4	329	cGg/cAg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52724307	52724307	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	484	675	0	ENST00000322088.6:c.1439C>G	p.Ala480Gly	p.A480G	ENST00000322088	NM_014225.5	480	gCc/gGc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086157	16086158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1441	151	699	0	ENST00000281043.3:c.1338dup	p.Leu447IlefsTer13	p.L447Ifs*13	ENST00000281043	NM_005378.4	445	gaa/gAaa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467088	25467088	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1293	287	686	0	ENST00000264709.3:c.1787G>T	p.Arg596Leu	p.R596L	ENST00000264709	NM_175629.2	596	cGg/cTg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523088	25523088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	251	521	4	ENST00000264709.3:c.97C>T	p.Arg33Cys	p.R33C	ENST00000264709	NM_175629.2	33	Cgt/Tgt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248630	212248631	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	108	554	0	ENST00000342788.4:c.3635_3636dup	p.Ala1213LeufsTer11	p.A1213Lfs*11	ENST00000342788	NM_005235.2	1212	-/TT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212576842	212576842	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	120	666	0	ENST00000342788.4:c.1057A>G	p.Ile353Val	p.I353V	ENST00000342788	NM_005235.2	353	Att/Gtt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31386409	31386409	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs572676072		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1430	190	706	0	ENST00000328111.2:c.1634G>A	p.Arg545His	p.R545H	ENST00000328111	NM_006892.3	545	cGc/cAc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485116	57485116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	200	472	0	ENST00000371085.3:c.950G>A	p.Arg317His	p.R317H	ENST00000371085	NM_000516.4	317	cGc/cAc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026106	71026106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	131	502	0	ENST00000318789.4:c.1516G>A	p.Ala506Thr	p.A506T	ENST00000318789	NM_032682.5	506	Gcg/Acg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71090497	71090497	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	86	373	0	ENST00000318789.4:c.851A>G	p.His284Arg	p.H284R	ENST00000318789	NM_032682.5	284	cAc/cGc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980581	1980581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1187	268	576	0	ENST00000382891.5:c.4043C>T	p.Pro1348Leu	p.P1348L	ENST00000382891	NM_133335.3	1348	cCg/cTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509119	66509119	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	168	712	0	ENST00000273854.3:c.208A>G	p.Met70Val	p.M70V	ENST00000273854	NM_004439.5	70	Atg/Gtg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081558	143081558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	409	574	1	ENST00000262992.4:c.1516G>T	p.Gly506Trp	p.G506W	ENST00000262992	NM_001101669.1	506	Ggg/Tgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510170	187510170	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1303	98	512	0	ENST00000441802.2:c.13343T>C	p.Leu4448Pro	p.L4448P	ENST00000441802	NM_005245.3	4448	cTa/cCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518869	187518869	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1520	410	833	0	ENST00000441802.2:c.12335T>C	p.Val4112Ala	p.V4112A	ENST00000441802	NM_005245.3	4112	gTt/gCt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628739	187628739	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1966	107	866	0	ENST00000441802.2:c.2243T>C	p.Phe748Ser	p.F748S	ENST00000441802	NM_005245.3	748	tTc/tCc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295233	1295233	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	211	420	1				ENST00000310581	NM_198253.2																																																																																	
PIK3R1	5295	MSKCC	GRCh37	5	67591289	67591289	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	211	517	0	ENST00000274335.5:c.1787A>G	p.Glu596Gly	p.E596G	ENST00000274335		596	gAg/gGg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131930737	131930737	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	323	435	0	ENST00000265335.6:c.1969+1G>A		p.X657_splice	ENST00000265335		657																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176524398	176524398	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1301	163	602	0	ENST00000292408.4:c.2259G>T	p.Glu753Asp	p.E753D	ENST00000292408	NM_213647.1	753	gaG/gaT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046076	180046076	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	234	514	0	ENST00000261937.6:c.2795A>G	p.Tyr932Cys	p.Y932C	ENST00000261937	NM_182925.4	932	tAc/tGc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324917	31324917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	131	373	0	ENST00000412585.2:c.19delC	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000412585	NM_005514.6	7	Cga/ga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163217	32163217	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1250	655	907	1	ENST00000375023.3:c.6009del	p.Lys2003AsnfsTer13	p.K2003Nfs*13	ENST00000375023	NM_004557.3	2003	aaA/aa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32164180	32164180	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	131	409	0	ENST00000375023.3:c.5219G>T	p.Trp1740Leu	p.W1740L	ENST00000375023	NM_004557.3	1740	tGg/tTg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797187	32797187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1409	181	634	2	ENST00000374899.4:c.1922G>A	p.Cys641Tyr	p.C641Y	ENST00000374899	NM_018833.2	641	tGc/tAc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683604	162683604	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	216	515	0	ENST00000366898.1:c.365T>G	p.Ile122Ser	p.I122S	ENST00000366898	NM_004562.2	122	aTt/aGt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2958141	2958141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1290	256	692	1	ENST00000396946.4:c.2591C>T	p.Thr864Ile	p.T864I	ENST00000396946	NM_032415.4	864	aCc/aTc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2977669	2977669	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1337	288	693	2	ENST00000396946.4:c.1018-3C>T		p.X340_splice	ENST00000396946	NM_032415.4	340																																																																																
CARD11	84433	MSKCC	GRCh37	7	2979478	2979478	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1758	150	766	0	ENST00000396946.4:c.769A>G	p.Ile257Val	p.I257V	ENST00000396946	NM_032415.4	257	Att/Gtt																																																																															
PMS2	5395	MSKCC	GRCh37	7	6042145	6042145	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	149	450	0	ENST00000265849.7:c.476T>C	p.Val159Ala	p.V159A	ENST00000265849	NM_000535.5	159	gTg/gCg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980471	70980471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1547	341	833	3	ENST00000276594.2:c.906G>A	p.Met302Ile	p.M302I	ENST00000276594	NM_024504.3	302	atG/atA																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069193	5069193	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	391	745	0	ENST00000381652.3:c.1502delC	p.Pro501GlnfsTer10	p.P501Qfs*10	ENST00000381652	NM_004972.3	500	Ccc/cc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971039	21971039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	446	481	1	ENST00000304494.5:c.319C>T	p.Arg107Cys	p.R107C	ENST00000304494	NM_000077.4	107	Cgc/Tgc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87563419	87563419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1327	352	747	0	ENST00000277120.3:c.1807C>T	p.Arg603Cys	p.R603C	ENST00000277120		603	Cgt/Tgt																																																																															
SYK	6850	MSKCC	GRCh37	9	93626948	93626948	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1238	267	673	2	ENST00000375746.1:c.795G>T	p.Gln265His	p.Q265H	ENST00000375746	NM_001174167.1	265	caG/caT																																																																															
RXRA	6256	MSKCC	GRCh37	9	137293634	137293634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1468	682	949	2	ENST00000481739.1:c.185G>A	p.Gly62Asp	p.G62D	ENST00000481739	NM_002957.4	62	gGc/gAc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139802649	139802649	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	84	511	0	ENST00000247668.2:c.494A>G	p.His165Arg	p.H165R	ENST00000247668	NM_021138.3	165	cAt/cGt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923680	39923681	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1438	179	648	0	ENST00000378444.4:c.3410_3411del	p.Lys1137SerfsTer4	p.K1137Sfs*4	ENST00000378444	NM_001123385.1	1137	aAA/a																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652554	48652554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	326	434	0	ENST00000376670.3:c.1225G>A	p.Ala409Thr	p.A409T	ENST00000376670	NM_002049.3	409	Gct/Act																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53225186	53225186	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1403	301	806	0	ENST00000375401.3:c.3032del	p.Asn1011ThrfsTer44	p.N1011Tfs*44	ENST00000375401	NM_004187.3	1011	aAc/ac																																																																															
MED12	9968	MSKCC	GRCh37	X	70339584	70339584	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1675	140	825	0	ENST00000374080.3:c.253A>G	p.Thr85Ala	p.T85A	ENST00000374080		85	Acc/Gcc																																																																															
BTK	695	MSKCC	GRCh37	X	100608978	100608978	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1283	96	588	0	ENST00000308731.7:c.1632-2A>G		p.X544_splice	ENST00000308731	NM_000061.2	544																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27089628	27089633	+	frameshift_variant	Frame_Shift_Ins	INS	TCCATG	TCCATG	GGCCTTATGA			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1354	333	664	0	ENST00000324856.7:c.2584_2589delinsGGCCTTATGA	p.Ser862GlyfsTer11	p.S862Gfs*11	ENST00000324856	NM_006015.4	862	TCCATG/GGCCTTATGA																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602646	10602646	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	119	472	0	ENST00000171111.5:c.932A>G	p.His311Arg	p.H311R	ENST00000171111	NM_203500.1	311	cAc/cGc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	113	488	1	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198268383	198268383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1175	104	497	0	ENST00000335508.6:c.1645C>T	p.Arg549Cys	p.R549C	ENST00000335508	NM_012433.2	549	Cgt/Tgt																																																																															
TET1	80312	MSKCC	GRCh37	10	70332105	70332105	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	30	161	0	ENST00000373644.4:c.10T>A	p.Ser4Thr	p.S4T	ENST00000373644	NM_030625.2	4	Tcc/Acc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600420	10600420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	189	669	0	ENST00000171111.5:c.1435G>A	p.Asp479Asn	p.D479N	ENST00000171111	NM_203500.1	479	Gac/Aac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101118	41101118	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	116	461	0	ENST00000373198.4:c.1238C>G	p.Ala413Gly	p.A413G	ENST00000373198	NM_133170.3	413	gCg/gGg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98232214	98232214	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0016471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	111	402	0	ENST00000331920.6:c.1729-1G>C		p.X577_splice	ENST00000331920	NM_000264.3	577																																																																																
RBM10	8241	MSKCC	GRCh37	X	47039815	47039815	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0016471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	126	731	0	ENST00000329236.7:c.927-3C>G		p.X309_splice	ENST00000329236	NM_001204466.1	309																																																																																
RBM10	8241	MSKCC	GRCh37	X	47040611	47040611	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0016471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	56	315	0	ENST00000329236.7:c.1015-3C>G		p.X339_splice	ENST00000329236	NM_001204466.1	339																																																																																
IL7R	3575	MSKCC	GRCh37	5	35867516	35867516	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	86	526	0	ENST00000303115.3:c.330G>T	p.Lys110Asn	p.K110N	ENST00000303115	NM_002185.3	110	aaG/aaT																																																																															
AXL	558	MSKCC	GRCh37	19	41743993	41743993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	194	758	1	ENST00000301178.4:c.928G>A	p.Ala310Thr	p.A310T	ENST00000301178	NM_021913.4	310	Gca/Aca																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18491483	18491483	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	66	413	0	ENST00000266497.5:c.1395+1G>C		p.X465_splice	ENST00000266497		465																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519930		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	116	547	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790793	89790793	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	141	743	0	ENST00000336032.3:c.180C>A	p.Phe60Leu	p.F60L	ENST00000336032	NM_006813.2	60	ttC/ttA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509103	66509103	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	114	511	1	ENST00000273854.3:c.224G>A	p.Trp75Ter	p.W75*	ENST00000273854	NM_004439.5	75	tGg/tAg																																																																															
TERT	7015	MSKCC	GRCh37	5	1293661	1293661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	146	633	2	ENST00000310581.5:c.1340G>A	p.Arg447His	p.R447H	ENST00000310581	NM_198253.2	447	cGc/cAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178685	56178685	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	49	173	0	ENST00000399503.3:c.3658C>T	p.Gln1220Ter	p.Q1220*	ENST00000399503	NM_005921.1	1220	Caa/Taa																																																																															
MPL	4352	MSKCC	GRCh37	1	43803818	43803818	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147938568		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	139	549	0	ENST00000372470.3:c.128G>A	p.Arg43Gln	p.R43Q	ENST00000372470	NM_005373.2	43	cGa/cAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147533	47147533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	90	502	1	ENST00000409792.3:c.4793G>A	p.Arg1598Gln	p.R1598Q	ENST00000409792	NM_014159.6	1598	cGa/cAa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101909971	101909971	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	60	241	0	ENST00000374994.4:c.1291C>A	p.Leu431Ile	p.L431I	ENST00000374994	NM_004612.2	431	Ctt/Att																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936096	178936096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	136	643	4	ENST00000263967.3:c.1638G>T	p.Gln546His	p.Q546H	ENST00000263967	NM_006218.2	546	caG/caT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043386	180043386	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	127	571	0	ENST00000261937.6:c.3200A>T	p.Asp1067Val	p.D1067V	ENST00000261937	NM_182925.4	1067	gAc/gTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254749	16254749	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	158	545	2	ENST00000375759.3:c.2014C>T	p.Arg672Ter	p.R672*	ENST00000375759	NM_015001.2	672	Cga/Tga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600447	10600447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	26	684	1	ENST00000171111.5:c.1408C>T	p.Arg470Cys	p.R470C	ENST00000171111	NM_203500.1	470	Cgt/Tgt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395162	139395162	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199652954		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	110	587	0	ENST00000277541.6:c.5776C>T	p.Arg1926Cys	p.R1926C	ENST00000277541	NM_017617.3	1926	Cgc/Tgc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50921170	50921170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	129	645	2	ENST00000440232.2:c.3290G>A	p.Arg1097Gln	p.R1097Q	ENST00000440232	NM_002691.3	1097	cGg/cAg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729907	41729907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	108	493	0	ENST00000242208.4:c.622G>A	p.Glu208Lys	p.E208K	ENST00000242208	NM_002192.2	208	Gaa/Aaa																																																																															
HGF	3082	MSKCC	GRCh37	7	81335719	81335719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	94	413	1	ENST00000222390.5:c.1641G>T	p.Trp547Cys	p.W547C	ENST00000222390	NM_000601.4	547	tgG/tgT																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852251	63852251	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137983907		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	101	412	1	ENST00000279873.7:c.3029G>A	p.Arg1010Gln	p.R1010Q	ENST00000279873	NM_032199.2	1010	cGg/cAg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467548	66467548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	75	341	0	ENST00000273854.3:c.721G>T	p.Ala241Ser	p.A241S	ENST00000273854	NM_004439.5	241	Gct/Tct																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513309	44513309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	186	700	0	ENST00000291552.4:c.626G>A	p.Arg209His	p.R209H	ENST00000291552	NM_006758.2	209	cGt/cAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356251	66356251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	128	500	1	ENST00000273854.3:c.1246C>T	p.Pro416Ser	p.P416S	ENST00000273854	NM_004439.5	416	Ccc/Tcc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332272	70332272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	48	538	0	ENST00000373644.4:c.177G>T	p.Lys59Asn	p.K59N	ENST00000373644	NM_030625.2	59	aaG/aaT																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969848	81969848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	149	612	0	ENST00000359376.3:c.2917G>A	p.Asp973Asn	p.D973N	ENST00000359376	NM_002661.3	973	Gac/Aac																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841178	15841178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	127	538	2	ENST00000307771.7:c.1262G>A	p.Arg421Gln	p.R421Q	ENST00000307771	NM_005089.3	421	cGa/cAa																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43745248	43745248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	113	616	0	ENST00000523873.1:c.161C>T	p.Pro54Leu	p.P54L	ENST00000523873		54	cCa/cTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40710643	40710643	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151076965		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	105	493	0	ENST00000373198.4:c.4208G>A	p.Arg1403His	p.R1403H	ENST00000373198	NM_133170.3	1403	cGt/cAt																																																																															
TET1	80312	MSKCC	GRCh37	10	70411602	70411602	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	84	495	1	ENST00000373644.4:c.4277-1G>T		p.X1426_splice	ENST00000373644	NM_030625.2	1426																																																																																
TET1	80312	MSKCC	GRCh37	10	70333864	70333864	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528233201		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	91	428	2	ENST00000373644.4:c.1769G>A	p.Arg590Gln	p.R590Q	ENST00000373644	NM_030625.2	590	cGa/cAa																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946150	13946150	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	142	599	0	ENST00000405192.2:c.946C>T	p.Gln316Ter	p.Q316*	ENST00000405192	NM_001163147.1	316	Cag/Tag																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562336	21562336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	139	599	0	ENST00000382592.4:c.1583C>T	p.Ser528Leu	p.S528L	ENST00000382592	NM_014572.2	528	tCg/tTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412303	139412303	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	89	591	0	ENST00000277541.6:c.1342C>T	p.Arg448Ter	p.R448*	ENST00000277541	NM_017617.3	448	Cga/Tga																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81973613	81973613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	119	659	0	ENST00000359376.3:c.3430G>A	p.Asp1144Asn	p.D1144N	ENST00000359376	NM_002661.3	1144	Gat/Aat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178104	56178104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	72	376	0	ENST00000399503.3:c.3077C>A	p.Ser1026Tyr	p.S1026Y	ENST00000399503	NM_005921.1	1026	tCt/tAt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852488	63852488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	98	405	1	ENST00000279873.7:c.3266C>T	p.Ser1089Leu	p.S1089L	ENST00000279873	NM_032199.2	1089	tCg/tTg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728826	190728826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	99	420	0	ENST00000441310.2:c.2214G>T	p.Met738Ile	p.M738I	ENST00000441310	NM_000534.4	738	atG/atT																																																																															
ERG	2078	MSKCC	GRCh37	21	39772519	39772519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	103	425	0	ENST00000288319.7:c.722C>T	p.Thr241Met	p.T241M	ENST00000288319	NM_182918.3	241	aCg/aTg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38315007	38315007	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	187	664	1	ENST00000425967.3:c.57G>T	p.Trp19Cys	p.W19C	ENST00000425967	NM_001174067.1	19	tgG/tgT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979201	93979201	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	60	278	0	ENST00000369303.4:c.1627T>G	p.Phe543Val	p.F543V	ENST00000369303	NM_004440.3	543	Ttt/Gtt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343506	343506	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141807086		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	100	613	1	ENST00000262320.3:c.2168G>A	p.Arg723Gln	p.R723Q	ENST00000262320	NM_003502.3	723	cGa/cAa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521544	8521544	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	102	339	0	ENST00000356435.5:c.694C>T	p.Arg232Cys	p.R232C	ENST00000356435		232	Cgc/Tgc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139818343	139818343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	161	612	0	ENST00000247668.2:c.1178G>A	p.Arg393His	p.R393H	ENST00000247668	NM_021138.3	393	cGt/cAt																																																																															
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	109	479	1	ENST00000356142.4:c.85C>A	p.Pro29Thr	p.P29T	ENST00000356142	NM_018890.3	29	Cct/Act																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275649	41275649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	104	374	0	ENST00000349496.5:c.1544G>A	p.Arg515Gln	p.R515Q	ENST00000349496	NM_001904.3	515	cGa/cAa																																																																															
PARP1	142	MSKCC	GRCh37	1	226564924	226564924	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	113	457	0	ENST00000366794.5:c.1826A>G	p.Asp609Gly	p.D609G	ENST00000366794	NM_001618.3	609	gAt/gGt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5215356	5215356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	43	420	1	ENST00000357368.4:c.4262G>A	p.Arg1421His	p.R1421H	ENST00000357368	NM_002850.3	1421	cGc/cAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341142	8341142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	94	541	2	ENST00000356435.5:c.5074C>T	p.Arg1692Cys	p.R1692C	ENST00000356435		1692	Cgt/Tgt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275291	41275291	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750554859		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	131	338	0	ENST00000349496.5:c.1457G>A	p.Arg486His	p.R486H	ENST00000349496	NM_001904.3	486	cGc/cAc																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128201212	128201212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	105	594	0	ENST00000265960.3:c.1523G>A	p.Arg508His	p.R508H	ENST00000265960	NM_001006617.1	508	cGt/cAt																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66774133	66774133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	130	790	1	ENST00000307102.5:c.609G>T	p.Glu203Asp	p.E203D	ENST00000307102	NM_002755.3	203	gaG/gaT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681073	117681073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	135	614	0	ENST00000368508.3:c.3547G>A	p.Val1183Ile	p.V1183I	ENST00000368508	NM_002944.2	1183	Gtt/Att																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874167	155874167	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	163	656	1	ENST00000368323.3:c.364C>T	p.Arg122Ter	p.R122*	ENST00000368323	NM_006912.5	122	Cga/Tga																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66518894	66518894	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	95	314	0	ENST00000358598.2:c.178-3C>T		p.X60_splice	ENST00000358598	NM_212471.2	60																																																																																
CDK4	1019	MSKCC	GRCh37	12	58143065	58143065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	139	622	0	ENST00000257904.6:c.719G>A	p.Arg240Gln	p.R240Q	ENST00000257904	NM_000075.3	240	cGa/cAa																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2489172	2489172	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	130	540	0	ENST00000355716.4:c.77A>T	p.Tyr26Phe	p.Y26F	ENST00000355716	NM_003820.2	26	tAt/tTt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777122	9777122	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	165	810	1	ENST00000377346.4:c.886G>T	p.Val296Phe	p.V296F	ENST00000377346	NM_005026.3	296	Gtc/Ttc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784394	9784394	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	187	738	1	ENST00000377346.4:c.2779C>A	p.Arg927Ser	p.R927S	ENST00000377346	NM_005026.3	927	Cgc/Agc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784442	9784442	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	134	558	0	ENST00000377346.4:c.2827C>T	p.Gln943Ter	p.Q943*	ENST00000377346	NM_005026.3	943	Cag/Tag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11184646	11184646	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	122	374	1	ENST00000361445.4:c.6571G>T	p.Asp2191Tyr	p.D2191Y	ENST00000361445	NM_004958.3	2191	Gat/Tat																																																																															
MTOR	2475	MSKCC	GRCh37	1	11205060	11205060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	176	597	1	ENST00000361445.4:c.4729G>A	p.Ala1577Thr	p.A1577T	ENST00000361445	NM_004958.3	1577	Gcg/Acg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11272940	11272940	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	117	417	1	ENST00000361445.4:c.3311G>T	p.Gly1104Val	p.G1104V	ENST00000361445	NM_004958.3	1104	gGc/gTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16246014	16246014	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	74	241	0	ENST00000375759.3:c.1635+2T>C		p.X545_splice	ENST00000375759	NM_015001.2	545																																																																																
SPEN	23013	MSKCC	GRCh37	1	16255263	16255263	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	163	563	0	ENST00000375759.3:c.2528A>T	p.Glu843Val	p.E843V	ENST00000375759	NM_015001.2	843	gAg/gTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259024	16259024	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	124	461	0	ENST00000375759.3:c.6289G>T	p.Asp2097Tyr	p.D2097Y	ENST00000375759	NM_015001.2	2097	Gat/Tat																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259489	16259489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	72	420	0	ENST00000375759.3:c.6754G>T	p.Gly2252Cys	p.G2252C	ENST00000375759	NM_015001.2	2252	Ggt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260789	16260789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	104	392	0	ENST00000375759.3:c.8054C>G	p.Thr2685Ser	p.T2685S	ENST00000375759	NM_015001.2	2685	aCc/aGc																																																																															
CDC42	998	MSKCC	GRCh37	1	22405042	22405042	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	88	271	0	ENST00000344548.3:c.71C>A	p.Thr24Lys	p.T24K	ENST00000344548	NM_001039802.1	24	aCa/aAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106104	27106104	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	125	485	0	ENST00000324856.7:c.5715A>T	p.Lys1905Asn	p.K1905N	ENST00000324856	NM_006015.4	1905	aaA/aaT																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366705	40366705	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	85	344	0	ENST00000397332.2:c.492C>A	p.Ser164Arg	p.S164R	ENST00000397332	NM_001033082.2	164	agC/agA																																																																															
JUN	3725	MSKCC	GRCh37	1	59248046	59248046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	60	293	0	ENST00000371222.2:c.697C>T	p.Pro233Ser	p.P233S	ENST00000371222	NM_002228.3	233	Ccc/Tcc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65300330	65300330	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	80	308	0	ENST00000342505.4:c.3380T>G	p.Leu1127Arg	p.L1127R	ENST00000342505	NM_002227.2	1127	cTt/cGt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65309869	65309869	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	78	425	1	ENST00000342505.4:c.2281C>A	p.Pro761Thr	p.P761T	ENST00000342505	NM_002227.2	761	Cct/Act																																																																															
JAK1	3716	MSKCC	GRCh37	1	65335069	65335069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	64	413	1	ENST00000342505.4:c.572G>A	p.Gly191Glu	p.G191E	ENST00000342505	NM_002227.2	191	gGg/gAg																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117690338	117690338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	116	393	0	ENST00000369458.3:c.791C>T	p.Ser264Phe	p.S264F	ENST00000369458	NM_024626.3	264	tCt/tTt																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165686	118165686	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	79	248	0	ENST00000369448.3:c.196G>C	p.Val66Leu	p.V66L	ENST00000369448	NM_017709.3	66	Gtg/Ctg																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166428	118166428	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	70	334	0	ENST00000369448.3:c.938T>C	p.Val313Ala	p.V313A	ENST00000369448	NM_017709.3	313	gTg/gCg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462857	120462857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	43	178	0	ENST00000256646.2:c.5474G>A	p.Gly1825Asp	p.G1825D	ENST00000256646	NM_024408.3	1825	gGc/gAc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193181198	193181198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	87	382	1	ENST00000367435.3:c.1034C>T	p.Ser345Phe	p.S345F	ENST00000367435	NM_024529.4	345	tCt/tTt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982429	201982429	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	168	583	0	ENST00000359651.3:c.805+3G>T		p.X269_splice	ENST00000359651		269																																																																																
RET	5979	MSKCC	GRCh37	10	43609087	43609087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	121	711	1	ENST00000355710.3:c.1843G>A	p.Glu615Lys	p.E615K	ENST00000355710	NM_020975.4	615	Gag/Aag																																																																															
RET	5979	MSKCC	GRCh37	10	43609106	43609106	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	107	747	0	ENST00000355710.3:c.1862A>C	p.Glu621Ala	p.E621A	ENST00000355710	NM_020975.4	621	gAg/gCg																																																																															
TET1	80312	MSKCC	GRCh37	10	70446129	70446129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	60	412	2	ENST00000373644.4:c.5069G>A	p.Arg1690Gln	p.R1690Q	ENST00000373644	NM_030625.2	1690	cGa/cAa																																																																															
TET1	80312	MSKCC	GRCh37	10	70451141	70451141	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	123	558	0	ENST00000373644.4:c.5981G>A	p.Trp1994Ter	p.W1994*	ENST00000373644	NM_030625.2	1994	tGg/tAg																																																																															
TET1	80312	MSKCC	GRCh37	10	70451516	70451516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	174	618	1	ENST00000373644.4:c.6356C>T	p.Thr2119Ile	p.T2119I	ENST00000373644	NM_030625.2	2119	aCc/aTc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88672125	88672125	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	136	584	0	ENST00000372037.3:c.659C>A	p.Ser220Tyr	p.S220Y	ENST00000372037	NM_004329.2	220	tCt/tAt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88681276	88681276	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	115	435	0	ENST00000372037.3:c.1167-1G>C		p.X389_splice	ENST00000372037	NM_004329.2	389																																																																																
PTEN	5728	MSKCC	GRCh37	10	89720839	89720839	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	136	436	0	ENST00000371953.3:c.990A>T	p.Lys330Asn	p.K330N	ENST00000371953	NM_000314.4	330	aaA/aaT																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575511	64575511	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	123	545	1	ENST00000337652.1:c.521G>C	p.Gly174Ala	p.G174A	ENST00000337652	NM_130803.2	174	gGt/gCt																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589750	69589750	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	26	79	0	ENST00000168712.1:c.103C>G	p.Pro35Ala	p.P35A	ENST00000168712	NM_002007.2	35	Ccc/Gcc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943958	71943958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	151	697	0	ENST00000298229.2:c.1891C>T	p.Leu631Phe	p.L631F	ENST00000298229	NM_001567.3	631	Ctc/Ttc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943962	71943962	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	153	688	1	ENST00000298229.2:c.1895T>A	p.Leu632His	p.L632H	ENST00000298229	NM_001567.3	632	cTc/cAc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77091039	77091039	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	74	303	0	ENST00000356341.3:c.191C>G	p.Thr64Arg	p.T64R	ENST00000356341	NM_002576.4	64	aCa/aGa																																																																															
EED	8726	MSKCC	GRCh37	11	85989443	85989443	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	57	300	0	ENST00000263360.6:c.1202G>T	p.Cys401Phe	p.C401F	ENST00000263360	NM_003797.3	401	tGt/tTt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94204874	94204874	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	78	393	2	ENST00000323929.3:c.711C>A	p.Phe237Leu	p.F237L	ENST00000323929	NM_005591.3	237	ttC/ttA																																																																															
PGR	5241	MSKCC	GRCh37	11	100998456	100998456	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	83	423	0	ENST00000325455.5:c.1346C>A	p.Ser449Ter	p.S449*	ENST00000325455	NM_001202474.3	449	tCg/tAg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998903	100998903	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	92	543	0	ENST00000325455.5:c.899T>A	p.Val300Glu	p.V300E	ENST00000325455	NM_001202474.3	300	gTg/gAg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102206781	102206781	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	142	556	0	ENST00000263464.3:c.1409C>G	p.Thr470Ser	p.T470S	ENST00000263464	NM_001165.4	470	aCt/aGt																																																																															
ATM	472	MSKCC	GRCh37	11	108114793	108114793	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147915571		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	137	556	1	ENST00000278616.4:c.610G>A	p.Gly204Arg	p.G204R	ENST00000278616	NM_000051.3	204	Gga/Aga																																																																															
ATM	472	MSKCC	GRCh37	11	108192126	108192126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	117	517	2	ENST00000278616.4:c.6551G>A	p.Ser2184Asn	p.S2184N	ENST00000278616	NM_000051.3	2184	aGc/aAc																																																																															
ATM	472	MSKCC	GRCh37	11	108203625	108203625	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	39	180	0	ENST00000278616.4:c.7925G>A	p.Arg2642Lys	p.R2642K	ENST00000278616	NM_000051.3	2642	aGa/aAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307396	118307396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	13	25	0	ENST00000534358.1:c.169C>T	p.Pro57Ser	p.P57S	ENST00000534358	NM_005933.3	57	Ccc/Tcc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118352612	118352612	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	144	567	0	ENST00000534358.1:c.3817G>T	p.Glu1273Ter	p.E1273*	ENST00000534358	NM_005933.3	1273	Gaa/Taa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373119	118373119	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	80	287	0	ENST00000534358.1:c.6512C>A	p.Pro2171His	p.P2171H	ENST00000534358	NM_005933.3	2171	cCt/cAt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	402193	402193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	182	675	1	ENST00000399788.2:c.4598C>A	p.Pro1533His	p.P1533H	ENST00000399788	NM_001042603.1	1533	cCt/cAt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	406356	406356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	139	561	0	ENST00000399788.2:c.4085G>C	p.Ser1362Thr	p.S1362T	ENST00000399788	NM_001042603.1	1362	aGt/aCt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	442721	442721	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	125	531	1	ENST00000399788.2:c.1585C>T	p.Gln529Ter	p.Q529*	ENST00000399788	NM_001042603.1	529	Cag/Tag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	459888	459888	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	183	797	0	ENST00000399788.2:c.1207G>C	p.Glu403Gln	p.E403Q	ENST00000399788	NM_001042603.1	403	Gaa/Caa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870962	12870962	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	75	299	0	ENST00000228872.4:c.189T>A	p.Asp63Glu	p.D63E	ENST00000228872	NM_004064.3	63	gaT/gaA																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18439787	18439787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	75	373	0	ENST00000266497.5:c.685G>T	p.Gly229Cys	p.G229C	ENST00000266497		229	Ggt/Tgt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18478024	18478024	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	144	636	0	ENST00000266497.5:c.1264A>T	p.Lys422Ter	p.K422*	ENST00000266497		422	Aaa/Taa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18800935	18800935	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	70	481	0	ENST00000266497.5:c.4311G>C	p.Trp1437Cys	p.W1437C	ENST00000266497		1437	tgG/tgC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424212	49424212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	45	149	0	ENST00000301067.7:c.13850G>T	p.Ser4617Ile	p.S4617I	ENST00000301067	NM_003482.3	4617	aGt/aTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431434	49431434	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	139	568	0	ENST00000301067.7:c.9705G>T	p.Lys3235Asn	p.K3235N	ENST00000301067	NM_003482.3	3235	aaG/aaT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433051	49433051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	133	535	0	ENST00000301067.7:c.8320C>T	p.Arg2774Trp	p.R2774W	ENST00000301067	NM_003482.3	2774	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437498	49437498	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	94	513	0	ENST00000301067.7:c.5387G>T	p.Arg1796Leu	p.R1796L	ENST00000301067	NM_003482.3	1796	cGg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444138	49444138	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	128	648	1	ENST00000301067.7:c.3233T>A	p.Val1078Asp	p.V1078D	ENST00000301067	NM_003482.3	1078	gTt/gAt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56490901	56490901	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	142	498	1	ENST00000267101.3:c.2347C>A	p.Leu783Met	p.L783M	ENST00000267101	NM_001982.3	783	Ctg/Atg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861928	57861928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	105	412	0	ENST00000228682.2:c.1229C>A	p.Ser410Tyr	p.S410Y	ENST00000228682	NM_005269.2	410	tCt/tAt																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112884105	112884105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	71	440	0	ENST00000351677.2:c.40G>A	p.Val14Met	p.V14M	ENST00000351677	NM_002834.3	14	Gtg/Atg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112611	115112611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	174	839	0	ENST00000257566.3:c.1129G>A	p.Ala377Thr	p.A377T	ENST00000257566	NM_016569.3	377	Gcc/Acc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112629	115112629	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	212	894	0	ENST00000257566.3:c.1111A>T	p.Ser371Cys	p.S371C	ENST00000257566	NM_016569.3	371	Agc/Tgc																																																																															
MSI1	4440	MSKCC	GRCh37	12	120783963	120783963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	119	542	0	ENST00000257552.2:c.1022G>T	p.Ser341Ile	p.S341I	ENST00000257552	NM_002442.3	341	aGc/aTc																																																																															
MSI1	4440	MSKCC	GRCh37	12	120783993	120783993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	108	636	0	ENST00000257552.2:c.992G>A	p.Ser331Asn	p.S331N	ENST00000257552	NM_002442.3	331	aGt/aAt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431456	121431456	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	122	550	0	ENST00000257555.6:c.660G>C	p.Arg220Ser	p.R220S	ENST00000257555		220	agG/agC																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432004	121432004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	132	691	0	ENST00000257555.6:c.751G>A	p.Ala251Thr	p.A251T	ENST00000257555		251	Gca/Aca																																																																															
POLE	5426	MSKCC	GRCh37	12	133249311	133249311	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	165	676	0	ENST00000320574.5:c.1588G>T	p.Asp530Tyr	p.D530Y	ENST00000320574	NM_006231.2	530	Gac/Tac																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562946	21562946	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	95	523	0	ENST00000382592.4:c.973G>C	p.Ala325Pro	p.A325P	ENST00000382592	NM_014572.2	325	Gcc/Ccc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21565438	21565438	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	104	572	0	ENST00000382592.4:c.448G>C	p.Val150Leu	p.V150L	ENST00000382592	NM_014572.2	150	Gtg/Ctg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26967644	26967644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	99	429	0	ENST00000381527.3:c.787G>A	p.Ala263Thr	p.A263T	ENST00000381527	NM_001260.1	263	Gca/Aca																																																																															
FLT1	2321	MSKCC	GRCh37	13	28886206	28886206	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	98	560	0	ENST00000282397.4:c.3416G>T	p.Arg1139Ile	p.R1139I	ENST00000282397	NM_002019.4	1139	aGa/aTa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32890607	32890607	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	115	433	2	ENST00000380152.3:c.10G>T	p.Gly4Ter	p.G4*	ENST00000380152		4	Gga/Tga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906773	32906773	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	148	756	0	ENST00000380152.3:c.1158A>T	p.Glu386Asp	p.E386D	ENST00000380152		386	gaA/gaT																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911439	32911439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	86	494	1	ENST00000380152.3:c.2947C>A	p.Pro983Thr	p.P983T	ENST00000380152		983	Cca/Aca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911646	32911646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	85	451	1	ENST00000380152.3:c.3154G>A	p.Ala1052Thr	p.A1052T	ENST00000380152		1052	Gca/Aca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914347	32914347	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	99	442	0	ENST00000380152.3:c.5855T>A	p.Leu1952Ter	p.L1952*	ENST00000380152		1952	tTg/tAg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929183	32929183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	175	703	0	ENST00000380152.3:c.7193C>A	p.Thr2398Asn	p.T2398N	ENST00000380152		2398	aCt/aAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32945215	32945215	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	124	559	0	ENST00000380152.3:c.8610G>T	p.Gln2870His	p.Q2870H	ENST00000380152		2870	caG/caT																																																																															
BRCA2	675	MSKCC	GRCh37	13	32971182	32971182	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	108	516	0	ENST00000380152.3:c.9648+1G>A		p.X3216_splice	ENST00000380152		3216																																																																																
FOXO1	2308	MSKCC	GRCh37	13	41134339	41134339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	66	304	0	ENST00000379561.5:c.1289G>T	p.Ser430Ile	p.S430I	ENST00000379561	NM_002015.3	430	aGc/aTc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134405	41134405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	79	370	0	ENST00000379561.5:c.1223C>T	p.Ala408Val	p.A408V	ENST00000379561	NM_002015.3	408	gCg/gTg																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281926	49281926	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	147	649	0	ENST00000282018.3:c.973C>A	p.Pro325Thr	p.P325T	ENST00000282018	NM_020377.2	325	Cca/Aca																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514380	103514380	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	53	214	0	ENST00000355739.4:c.881G>C	p.Gly294Ala	p.G294A	ENST00000355739	NM_000123.3	294	gGt/gCt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514691	103514691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	91	356	0	ENST00000355739.4:c.1192G>T	p.Asp398Tyr	p.D398Y	ENST00000355739	NM_000123.3	398	Gac/Tac																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435622	110435622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	61	556	0	ENST00000375856.3:c.2779C>T	p.Pro927Ser	p.P927S	ENST00000375856	NM_003749.2	927	Ccc/Tcc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061185	38061185	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	84	307	1	ENST00000250448.2:c.804C>A	p.Cys268Ter	p.C268*	ENST00000250448	NM_004496.3	268	tgC/tgA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061616	38061616	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	28	154	0	ENST00000250448.2:c.373A>T	p.Asn125Tyr	p.N125Y	ENST00000250448	NM_004496.3	125	Aat/Tat																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68352614	68352614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	111	420	0	ENST00000487270.1:c.481C>T	p.Pro161Ser	p.P161S	ENST00000487270	NM_133509.3	161	Ccc/Tcc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81554299	81554299	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	134	582	0	ENST00000298171.2:c.319G>A	p.Glu107Lys	p.E107K	ENST00000298171	NM_000369.2	107	Gaa/Aaa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81574766	81574766	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	123	463	0	ENST00000298171.2:c.662T>G	p.Phe221Cys	p.F221C	ENST00000298171	NM_000369.2	221	tTt/tGt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95571537	95571537	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	73	437	0	ENST00000343455.3:c.3140T>G	p.Leu1047Arg	p.L1047R	ENST00000343455	NM_177438.2	1047	cTg/cGg																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675119	40675119	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	135	721	1	ENST00000249776.8:c.83C>A	p.Pro28Gln	p.P28Q	ENST00000249776	NM_033286.3	28	cCg/cAg																																																																															
RAD51	5888	MSKCC	GRCh37	15	40993383	40993383	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	83	369	0	ENST00000267868.3:c.209A>T	p.Lys70Ile	p.K70I	ENST00000267868	NM_002875.4	70	aAa/aTa																																																																															
MGA	23269	MSKCC	GRCh37	15	41962157	41962157	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	43	250	0	ENST00000219905.7:c.1064+1G>C		p.X355_splice	ENST00000219905	NM_001164273.1	355																																																																																
MGA	23269	MSKCC	GRCh37	15	42005557	42005557	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	119	547	0	ENST00000219905.7:c.3293A>G	p.His1098Arg	p.H1098R	ENST00000219905	NM_001164273.1	1098	cAt/cGt																																																																															
MGA	23269	MSKCC	GRCh37	15	42034999	42034999	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	143	557	0	ENST00000219905.7:c.4841C>A	p.Pro1614His	p.P1614H	ENST00000219905	NM_001164273.1	1614	cCt/cAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42042175	42042175	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	143	682	1	ENST00000219905.7:c.6370G>T	p.Glu2124Ter	p.E2124*	ENST00000219905	NM_001164273.1	2124	Gaa/Taa																																																																															
MGA	23269	MSKCC	GRCh37	15	42057152	42057152	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	178	616	1	ENST00000219905.7:c.7813C>A	p.Leu2605Ile	p.L2605I	ENST00000219905	NM_001164273.1	2605	Ctc/Atc																																																																															
MGA	23269	MSKCC	GRCh37	15	42058491	42058491	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	73	473	0	ENST00000219905.7:c.8211G>T	p.Gln2737His	p.Q2737H	ENST00000219905	NM_001164273.1	2737	caG/caT																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43713327	43713327	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs199673175		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	198	880	0	ENST00000382044.4:c.4146G>T	p.Glu1382Asp	p.E1382D	ENST00000382044	NM_001141980.1	1382	gaG/gaT																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43784526	43784526	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	174	534	2	ENST00000382044.4:c.148C>T	p.Arg50Ter	p.R50*	ENST00000382044	NM_001141980.1	50	Cga/Tga																																																																															
B2M	567	MSKCC	GRCh37	15	45007758	45007758	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	76	340	0	ENST00000558401.1:c.205G>C	p.Val69Leu	p.V69L	ENST00000558401	NM_004048.2	69	Gtg/Ctg																																																																															
CD276	80381	MSKCC	GRCh37	15	73996138	73996138	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	172	750	0	ENST00000318443.5:c.872A>C	p.Lys291Thr	p.K291T	ENST00000318443	NM_001024736.1	291	aAa/aCa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88670449	88670449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	58	370	0	ENST00000360948.2:c.1237G>A	p.Val413Met	p.V413M	ENST00000360948	NM_001012338.2	413	Gtg/Atg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680726	88680726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	110	504	0	ENST00000360948.2:c.531G>T	p.Gln177His	p.Q177H	ENST00000360948	NM_001012338.2	177	caG/caT																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727456	88727456	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	65	384	0	ENST00000360948.2:c.323T>G	p.Leu108Arg	p.L108R	ENST00000360948	NM_001012338.2	108	cTg/cGg																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631917	90631917	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	146	639	0	ENST00000330062.3:c.436A>T	p.Thr146Ser	p.T146S	ENST00000330062	NM_002168.2	146	Act/Tct																																																																															
BLM	641	MSKCC	GRCh37	15	91303937	91303937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	122	553	1	ENST00000355112.3:c.1334C>T	p.Pro445Leu	p.P445L	ENST00000355112	NM_000057.2	445	cCt/cTt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99482590	99482590	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	106	343	0	ENST00000268035.6:c.3457+1G>T		p.X1153_splice	ENST00000268035	NM_000875.3	1153																																																																																
IGF1R	3480	MSKCC	GRCh37	15	99491892	99491892	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	124	536	0	ENST00000268035.6:c.3677T>C	p.Met1226Thr	p.M1226T	ENST00000268035	NM_000875.3	1226	aTg/aCg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396746	396746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	99	442	2	ENST00000262320.3:c.280G>A	p.Asp94Asn	p.D94N	ENST00000262320	NM_003502.3	94	Gat/Aat																																																																															
TSC2	7249	MSKCC	GRCh37	16	2112592	2112592	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	76	496	0	ENST00000219476.3:c.1352G>T	p.Arg451Ile	p.R451I	ENST00000219476	NM_000548.3	451	aGa/aTa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633323	3633323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	144	682	0	ENST00000294008.3:c.4928C>T	p.Ala1643Val	p.A1643V	ENST00000294008	NM_032444.2	1643	gCc/gTc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3650995	3650995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	89	277	1	ENST00000294008.3:c.1148G>A	p.Ser383Asn	p.S383N	ENST00000294008	NM_032444.2	383	aGc/aAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786170	3786170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	148	620	0	ENST00000262367.5:c.4595C>T	p.Thr1532Ile	p.T1532I	ENST00000262367	NM_004380.2	1532	aCc/aTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858514	9858514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	78	470	0	ENST00000330684.3:c.2887C>T	p.Leu963Phe	p.L963F	ENST00000330684	NM_001134407.1	963	Ctc/Ttc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892199	9892199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	114	617	0	ENST00000330684.3:c.2291C>T	p.Ala764Val	p.A764V	ENST00000330684	NM_001134407.1	764	gCc/gTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916271	9916271	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	71	370	0	ENST00000330684.3:c.2018C>A	p.Pro673His	p.P673H	ENST00000330684	NM_001134407.1	673	cCt/cAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943740	9943740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	119	439	1	ENST00000330684.3:c.1201C>T	p.Pro401Ser	p.P401S	ENST00000330684	NM_001134407.1	401	Ccg/Tcg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14026061	14026061	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	59	290	1	ENST00000311895.7:c.1021G>T	p.Ala341Ser	p.A341S	ENST00000311895	NM_005236.2	341	Gca/Tca																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641476	23641476	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	136	693	2	ENST00000261584.4:c.1999G>T	p.Glu667Ter	p.E667*	ENST00000261584	NM_024675.3	667	Gaa/Taa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868166	56868166	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	95	499	0	ENST00000308159.5:c.1664G>T	p.Arg555Met	p.R555M	ENST00000308159	NM_014669.4	555	aGg/aTg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671731	67671731	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	119	388	1	ENST00000264010.4:c.2140G>T	p.Gly714Ter	p.G714*	ENST00000264010	NM_006565.3	714	Gga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822584	72822584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	71	280	1	ENST00000268489.5:c.9591G>T	p.Gln3197His	p.Q3197H	ENST00000268489	NM_006885.3	3197	caG/caT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827462	72827462	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143909254		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	137	585	0	ENST00000268489.5:c.9119G>A	p.Arg3040His	p.R3040H	ENST00000268489	NM_006885.3	3040	cGt/cAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828360	72828360	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	102	388	0	ENST00000268489.5:c.8221G>C	p.Ala2741Pro	p.A2741P	ENST00000268489	NM_006885.3	2741	Gct/Cct																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828736	72828736	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	69	399	1	ENST00000268489.5:c.7845G>T	p.Lys2615Asn	p.K2615N	ENST00000268489	NM_006885.3	2615	aaG/aaT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829368	72829368	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201280219		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	83	330	0	ENST00000268489.5:c.7213G>A	p.Ala2405Thr	p.A2405T	ENST00000268489	NM_006885.3	2405	Gct/Act																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81891936	81891936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	149	545	0	ENST00000359376.3:c.406G>T	p.Ala136Ser	p.A136S	ENST00000359376	NM_002661.3	136	Gcg/Tcg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944200	81944200	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	158	704	0	ENST00000359376.3:c.1809C>G	p.Asp603Glu	p.D603E	ENST00000359376	NM_002661.3	603	gaC/gaG																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944297	81944297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	110	456	0	ENST00000359376.3:c.1906C>A	p.Pro636Thr	p.P636T	ENST00000359376	NM_002661.3	636	Ccc/Acc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944315	81944315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	91	419	0	ENST00000359376.3:c.1924G>A	p.Glu642Lys	p.E642K	ENST00000359376	NM_002661.3	642	Gag/Aag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81979795	81979795	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	44	336	0	ENST00000359376.3:c.3497C>A	p.Pro1166His	p.P1166H	ENST00000359376	NM_002661.3	1166	cCt/cAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89337240	89337240	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	123	489	0	ENST00000301030.4:c.7791G>T	p.Lys2597Asn	p.K2597N	ENST00000301030	NM_001256183.1	2597	aaG/aaT																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346909	89346909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	12	110	1	ENST00000301030.4:c.6041C>T	p.Pro2014Leu	p.P2014L	ENST00000301030	NM_001256183.1	2014	cCg/cTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349424	89349424	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	174	708	1	ENST00000301030.4:c.3526C>T	p.Gln1176Ter	p.Q1176*	ENST00000301030	NM_001256183.1	1176	Cag/Tag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89811473	89811473	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	126	502	2	ENST00000389301.3:c.3520T>C	p.Trp1174Arg	p.W1174R	ENST00000389301	NM_000135.2	1174	Tgg/Cgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579360	7579360	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	174	603	0	ENST00000269305.4:c.327C>A	p.Phe109Leu	p.F109L	ENST00000269305	NM_001126112.2	109	ttC/ttA																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968237	15968237	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	81	291	0	ENST00000268712.3:c.5048G>C	p.Gly1683Ala	p.G1683A	ENST00000268712	NM_006311.3	1683	gGt/gCt																																																																															
NF1	4763	MSKCC	GRCh37	17	29509630	29509630	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	95	618	0	ENST00000358273.4:c.835G>T	p.Glu279Ter	p.E279*	ENST00000358273	NM_001042492.2	279	Gaa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29562745	29562745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	116	449	1	ENST00000358273.4:c.3825C>A	p.Phe1275Leu	p.F1275L	ENST00000358273	NM_001042492.2	1275	ttC/ttA																																																																															
NF1	4763	MSKCC	GRCh37	17	29670036	29670036	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	61	343	0	ENST00000358273.4:c.7072G>T	p.Glu2358Ter	p.E2358*	ENST00000358273	NM_001042492.2	2358	Gaa/Taa																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33446622	33446622	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	82	422	0	ENST00000335858.7:c.11T>A	p.Leu4His	p.L4H	ENST00000335858	NM_133629.2	4	cTc/cAc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627445	37627445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	193	714	0	ENST00000447079.4:c.1360G>A	p.Glu454Lys	p.E454K	ENST00000447079	NM_015083.1	454	Gaa/Aaa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682543	37682543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	102	436	0	ENST00000447079.4:c.3734C>A	p.Pro1245His	p.P1245H	ENST00000447079	NM_015083.1	1245	cCc/cAc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40874858	40874858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	180	708	2	ENST00000428826.2:c.442G>A	p.Glu148Lys	p.E148K	ENST00000428826		148	Gag/Aag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243890	41243890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	146	571	0	ENST00000357654.3:c.3658G>A	p.Asp1220Asn	p.D1220N	ENST00000357654	NM_007294.3	1220	Gat/Aat																																																																															
MSI2	124540	MSKCC	GRCh37	17	55478811	55478811	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	135	474	1	ENST00000284073.2:c.384A>T	p.Gln128His	p.Q128H	ENST00000284073	NM_138962.2	128	caA/caT																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438259	56438259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	94	421	1	ENST00000407977.2:c.734C>A	p.Thr245Asn	p.T245N	ENST00000407977		245	aCc/aAc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58678227	58678227	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	127	638	0	ENST00000305921.3:c.452T>A	p.Leu151His	p.L151H	ENST00000305921	NM_003620.3	151	cTt/cAt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58734029	58734029	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	142	439	0	ENST00000305921.3:c.1087C>A	p.Leu363Ile	p.L363I	ENST00000305921	NM_003620.3	363	Ctc/Atc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761044	59761044	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	64	475	0	ENST00000259008.2:c.3363T>A	p.Phe1121Leu	p.F1121L	ENST00000259008	NM_032043.2	1121	ttT/ttA																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763377	59763377	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	126	628	0	ENST00000259008.2:c.2725C>G	p.Leu909Val	p.L909V	ENST00000259008	NM_032043.2	909	Ctt/Gtt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59820420	59820420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	115	520	0	ENST00000259008.2:c.2333C>T	p.Ala778Val	p.A778V	ENST00000259008	NM_032043.2	778	gCt/gTt																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66526498	66526498	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	115	398	0	ENST00000358598.2:c.1054C>T	p.Arg352Ter	p.R352*	ENST00000358598	NM_212471.2	352	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117794	70117794	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	84	505	0	ENST00000245479.2:c.262C>G	p.Leu88Val	p.L88V	ENST00000245479	NM_000346.3	88	Ctg/Gtg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78867515	78867515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	100	379	0	ENST00000306801.3:c.2251G>A	p.Ala751Thr	p.A751T	ENST00000306801	NM_020761.2	751	Gcg/Acg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78896542	78896542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	187	807	1	ENST00000306801.3:c.2539C>T	p.Pro847Ser	p.P847S	ENST00000306801	NM_020761.2	847	Ccg/Tcg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372100	45372100	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	144	645	0	ENST00000262160.6:c.1069G>C	p.Val357Leu	p.V357L	ENST00000262160	NM_005901.5	357	Gtg/Ctg																																																																															
STK11	6794	MSKCC	GRCh37	19	1206962	1206962	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	80	383	0	ENST00000326873.7:c.50T>G	p.Leu17Arg	p.L17R	ENST00000326873	NM_000455.4	17	cTg/cGg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619151	1619151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	136	511	2	ENST00000344749.5:c.1409G>A	p.Gly470Asp	p.G470D	ENST00000344749	NM_001136139.2	470	gGc/gAc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619835	1619835	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	135	625	1	ENST00000344749.5:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000344749	NM_001136139.2	371	Cga/Tga																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2185859	2185859	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	186	736	0	ENST00000398665.3:c.131T>A	p.Val44Asp	p.V44D	ENST00000398665	NM_032482.2	44	gTc/gAc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4123839	4123839	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	65	380	0	ENST00000262948.5:c.34C>G	p.Leu12Val	p.L12V	ENST00000262948	NM_030662.3	12	Ctc/Gtc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231329	5231329	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	83	383	0	ENST00000357368.4:c.2147A>C	p.Asp716Ala	p.D716A	ENST00000357368	NM_002850.3	716	gAc/gCc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274259	5274259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	165	693	0	ENST00000357368.4:c.188G>A	p.Arg63Gln	p.R63Q	ENST00000357368	NM_002850.3	63	cGa/cAa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10246927	10246927	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	119	403	0	ENST00000340748.4:c.4478A>T	p.Asn1493Ile	p.N1493I	ENST00000340748		1493	aAc/aTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097632	11097632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	142	714	1	ENST00000344626.4:c.812G>A	p.Gly271Glu	p.G271E	ENST00000344626	NM_003072.3	271	gGg/gAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11168930	11168930	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	50	355	0	ENST00000344626.4:c.4425-1G>A		p.X1475_splice	ENST00000344626	NM_003072.3	1475																																																																																
DNAJB1	3337	MSKCC	GRCh37	19	14627434	14627434	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	162	682	0	ENST00000254322.2:c.636G>A	p.Trp212Ter	p.W212*	ENST00000254322	NM_006145.1	212	tgG/tgA																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272332	15272332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	125	750	1	ENST00000263388.2:c.6107C>A	p.Pro2036His	p.P2036H	ENST00000263388	NM_000435.2	2036	cCc/cAc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349208	15349208	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	119	515	1	ENST00000263377.2:c.4069T>A	p.Phe1357Ile	p.F1357I	ENST00000263377	NM_058243.2	1357	Ttt/Att																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366923	15366923	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	173	778	1	ENST00000263377.2:c.1703C>A	p.Pro568His	p.P568H	ENST00000263377	NM_058243.2	568	cCt/cAt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18274188	18274188	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146112354		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	143	589	3	ENST00000222254.8:c.1406G>A	p.Arg469Gln	p.R469Q	ENST00000222254	NM_005027.3	469	cGg/cAg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18962977	18962977	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	162	754	0	ENST00000262803.5:c.844A>G	p.Lys282Glu	p.K282E	ENST00000262803	NM_002911.3	282	Aag/Gag																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256796	19256796	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	86	365	0	ENST00000162023.5:c.917C>G	p.Thr306Ser	p.T306S	ENST00000162023		306	aCc/aGc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210973	36210973	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	180	886	3	ENST00000222270.7:c.724G>T	p.Glu242Ter	p.E242*	ENST00000222270	NM_014727.1	242	Gaa/Taa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211649	36211649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	56	365	0	ENST00000222270.7:c.1400G>A	p.Arg467Lys	p.R467K	ENST00000222270	NM_014727.1	467	aGg/aAg																																																																															
AXL	558	MSKCC	GRCh37	19	41727818	41727818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	201	777	2	ENST00000301178.4:c.443G>A	p.Arg148Lys	p.R148K	ENST00000301178	NM_021913.4	148	aGg/aAg																																																																															
AXL	558	MSKCC	GRCh37	19	41754692	41754692	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	140	564	0	ENST00000301178.4:c.1678T>G	p.Ser560Ala	p.S560A	ENST00000301178	NM_021913.4	560	Tcc/Gcc																																																																															
AXL	558	MSKCC	GRCh37	19	41758331	41758331	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	113	486	1	ENST00000301178.4:c.1787A>T	p.Asn596Ile	p.N596I	ENST00000301178	NM_021913.4	596	aAc/aTc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383133	42383133	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	137	632	0	ENST00000221972.3:c.153C>G	p.His51Gln	p.H51Q	ENST00000221972	NM_021601.3	51	caC/caG																																																																															
CD79A	973	MSKCC	GRCh37	19	42383300	42383300	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143511203		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	102	497	3	ENST00000221972.3:c.320G>A	p.Arg107Gln	p.R107Q	ENST00000221972	NM_021601.3	107	cGg/cAg																																																																															
CIC	23152	MSKCC	GRCh37	19	42797748	42797748	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	138	607	1	ENST00000575354.2:c.3800G>T	p.Ser1267Ile	p.S1267I	ENST00000575354	NM_015125.3	1267	aGc/aTc																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731458	47731458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	27	60	0	ENST00000449228.1:c.334G>T	p.Ala112Ser	p.A112S	ENST00000449228	NM_001127240.2	112	Gcc/Tcc																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140169	50140169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	98	402	1	ENST00000246792.3:c.256G>A	p.Gly86Ser	p.G86S	ENST00000246792	NM_006270.3	86	Ggc/Agc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905479	50905479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	138	738	2	ENST00000440232.2:c.607G>A	p.Gly203Arg	p.G203R	ENST00000440232	NM_002691.3	203	Ggg/Agg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082244	16082244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	189	854	1	ENST00000281043.3:c.58G>A	p.Glu20Lys	p.E20K	ENST00000281043	NM_005378.4	20	Gag/Aag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464549	25464549	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	152	663	0	ENST00000264709.3:c.1964T>C	p.Ile655Thr	p.I655T	ENST00000264709	NM_175629.2	655	aTt/aCt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523007	25523007	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	129	476	0	ENST00000264709.3:c.177+1G>A		p.X59_splice	ENST00000264709	NM_175629.2	59																																																																																
CENPA	1058	MSKCC	GRCh37	2	27015094	27015094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	75	410	0	ENST00000335756.4:c.196C>T	p.Pro66Ser	p.P66S	ENST00000335756	NM_001809.3	66	Ccc/Tcc																																																																															
ALK	238	MSKCC	GRCh37	2	29416152	29416152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	95	422	0	ENST00000389048.3:c.4801G>A	p.Ala1601Thr	p.A1601T	ENST00000389048	NM_004304.4	1601	Gct/Act																																																																															
ALK	238	MSKCC	GRCh37	2	29420486	29420486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	145	452	0	ENST00000389048.3:c.3995G>A	p.Ser1332Asn	p.S1332N	ENST00000389048	NM_004304.4	1332	aGc/aAc																																																																															
ALK	238	MSKCC	GRCh37	2	29455251	29455251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	111	476	0	ENST00000389048.3:c.2551G>A	p.Ala851Thr	p.A851T	ENST00000389048	NM_004304.4	851	Gcc/Acc																																																																															
ALK	238	MSKCC	GRCh37	2	29497965	29497965	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	70	337	0	ENST00000389048.3:c.2041G>T	p.Val681Phe	p.V681F	ENST00000389048	NM_004304.4	681	Gtt/Ttt																																																																															
ALK	238	MSKCC	GRCh37	2	30142930	30142930	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	158	742	0	ENST00000389048.3:c.596G>C	p.Gly199Ala	p.G199A	ENST00000389048	NM_004304.4	199	gGc/gCc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39240630	39240630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	119	493	1	ENST00000402219.2:c.2138G>A	p.Arg713Gln	p.R713Q	ENST00000402219	NM_005633.3	713	cGa/cAa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47656901	47656901	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	80	292	0	ENST00000233146.2:c.1097T>G	p.Phe366Cys	p.F366C	ENST00000233146	NM_000251.2	366	tTt/tGt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702229	47702229	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	134	480	0	ENST00000233146.2:c.1825G>C	p.Ala609Pro	p.A609P	ENST00000233146	NM_000251.2	609	Gct/Cct																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026861	48026861	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	101	348	0	ENST00000234420.5:c.1739C>A	p.Ser580Ter	p.S580*	ENST00000234420	NM_000179.2	580	tCg/tAg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61724118	61724118	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	113	377	0	ENST00000401558.2:c.784A>C	p.Asn262His	p.N262H	ENST00000401558	NM_003400.3	262	Aat/Cat																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881495	111881495	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	72	440	0	ENST00000393256.3:c.173G>T	p.Gly58Val	p.G58V	ENST00000393256	NM_006538.4	58	gGc/gTc																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872599	136872599	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	82	319	0	ENST00000241393.3:c.899T>A	p.Ile300Asn	p.I300N	ENST00000241393	NM_003467.2	300	aTc/aAc																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873334	136873334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	65	329	0	ENST00000241393.3:c.164G>A	p.Gly55Asp	p.G55D	ENST00000241393	NM_003467.2	55	gGc/gAc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096151	178096151	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	79	371	0	ENST00000397062.3:c.1180A>C	p.Lys394Gln	p.K394Q	ENST00000397062	NM_006164.4	394	Aaa/Caa																																																																															
PMS1	5378	MSKCC	GRCh37	2	190682785	190682785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	106	435	1	ENST00000441310.2:c.461T>C	p.Val154Ala	p.V154A	ENST00000441310	NM_000534.4	154	gTa/gCa																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735636	204735636	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	64	318	0	ENST00000302823.3:c.437G>T	p.Gly146Val	p.G146V	ENST00000302823	NM_005214.4	146	gGa/gTa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251784	212251784	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	86	291	0	ENST00000342788.4:c.3275C>A	p.Pro1092His	p.P1092H	ENST00000342788	NM_005235.2	1092	cCt/cAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566709	212566709	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	84	221	0	ENST00000342788.4:c.1472G>T	p.Arg491Ile	p.R491I	ENST00000342788	NM_005235.2	491	aGa/aTa																																																																															
BARD1	580	MSKCC	GRCh37	2	215609863	215609863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	143	451	0	ENST00000260947.4:c.1831G>A	p.Gly611Ser	p.G611S	ENST00000260947	NM_000465.2	611	Ggt/Agt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660640	227660640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	69	432	1	ENST00000305123.5:c.2815G>A	p.Glu939Lys	p.E939K	ENST00000305123	NM_005544.2	939	Gag/Aag																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624877	9624877	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	89	425	0	ENST00000353224.5:c.100G>T	p.Gly34Cys	p.G34C	ENST00000353224	NM_177990.2	34	Ggc/Tgc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375226	31375226	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	118	555	0	ENST00000328111.2:c.623A>T	p.Asp208Val	p.D208V	ENST00000328111	NM_006892.3	208	gAc/gTc																																																																															
SRC	6714	MSKCC	GRCh37	20	36022671	36022671	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	136	511	0	ENST00000358208.4:c.544A>T	p.Thr182Ser	p.T182S	ENST00000358208		182	Acc/Tcc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713398	40713398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	119	489	0	ENST00000373198.4:c.4117C>G	p.Leu1373Val	p.L1373V	ENST00000373198	NM_133170.3	1373	Ctc/Gtc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735434	40735434	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	101	481	0	ENST00000373198.4:c.3439C>T	p.Gln1147Ter	p.Q1147*	ENST00000373198	NM_133170.3	1147	Cag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40738976	40738976	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	72	337	0	ENST00000373198.4:c.3308G>T	p.Cys1103Phe	p.C1103F	ENST00000373198	NM_133170.3	1103	tGc/tTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739084	40739084	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	88	500	0	ENST00000373198.4:c.3200C>G	p.Thr1067Ser	p.T1067S	ENST00000373198	NM_133170.3	1067	aCc/aGc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264725	46264725	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	79	418	0	ENST00000371998.3:c.1595G>C	p.Gly532Ala	p.G532A	ENST00000371998		532	gGt/gCt																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62321546	62321546	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	134	584	0	ENST00000508582.2:c.2320C>A	p.Arg774Ser	p.R774S	ENST00000508582		774	Cgt/Agt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259140	36259140	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	89	445	0	ENST00000300305.3:c.351G>T	p.Lys117Asn	p.K117N	ENST00000300305		117	aaG/aaT																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655170	45655170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	69	323	0	ENST00000407780.3:c.682G>T	p.Val228Phe	p.V228F	ENST00000407780	NM_001283052.1	228	Gtc/Ttc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24167470	24167470	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	99	561	0	ENST00000263121.7:c.854A>T	p.Glu285Val	p.E285V	ENST00000263121	NM_003073.3	285	gAg/gTg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29092950	29092950	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	118	529	0	ENST00000328354.6:c.1034A>G	p.His345Arg	p.H345R	ENST00000328354	NM_007194.3	345	cAc/cGc																																																																															
EP300	2033	MSKCC	GRCh37	22	41513536	41513536	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	140	492	0	ENST00000263253.7:c.440C>A	p.Pro147His	p.P147H	ENST00000263253	NM_001429.3	147	cCt/cAt																																																																															
EP300	2033	MSKCC	GRCh37	22	41569755	41569755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	118	514	0	ENST00000263253.7:c.4746G>T	p.Gln1582His	p.Q1582H	ENST00000263253	NM_001429.3	1582	caG/caT																																																																															
VHL	7428	MSKCC	GRCh37	3	10191581	10191581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	124	469	0	ENST00000256474.2:c.574C>A	p.Pro192Thr	p.P192T	ENST00000256474	NM_000551.3	192	Cca/Aca																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182741	38182741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	156	478	0	ENST00000396334.3:c.894C>A	p.Phe298Leu	p.F298L	ENST00000396334	NM_002468.4	298	ttC/ttA																																																																															
SETD2	29072	MSKCC	GRCh37	3	47139539	47139539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	101	361	0	ENST00000409792.3:c.5048C>A	p.Ala1683Asp	p.A1683D	ENST00000409792	NM_014159.6	1683	gCc/gAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162942	47162942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	109	420	2	ENST00000409792.3:c.3184C>T	p.Pro1062Ser	p.P1062S	ENST00000409792	NM_014159.6	1062	Cca/Tca																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164456	47164456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	56	329	0	ENST00000409792.3:c.1670C>A	p.Ser557Tyr	p.S557Y	ENST00000409792	NM_014159.6	557	tCt/tAt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437158	52437158	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	142	482	0	ENST00000460680.1:c.1886C>A	p.Pro629His	p.P629H	ENST00000460680	NM_004656.3	629	cCc/cAc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678778	52678778	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	87	409	0	ENST00000394830.3:c.841T>A	p.Tyr281Asn	p.Y281N	ENST00000394830	NM_018313.4	281	Tat/Aat																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52702552	52702552	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	117	614	0	ENST00000394830.3:c.346T>A	p.Phe116Ile	p.F116I	ENST00000394830	NM_018313.4	116	Ttc/Atc																																																																															
MITF	4286	MSKCC	GRCh37	3	69987002	69987002	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	166	668	0	ENST00000352241.4:c.384G>C	p.Lys128Asn	p.K128N	ENST00000352241	NM_198159.2	128	aaG/aaC																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71037168	71037168	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	89	318	0	ENST00000318789.4:c.1123G>T	p.Glu375Ter	p.E375*	ENST00000318789	NM_032682.5	375	Gaa/Taa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89456423	89456423	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	62	195	0	ENST00000336596.2:c.1599C>A	p.Phe533Leu	p.F533L	ENST00000336596	NM_005233.5	533	ttC/ttA																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89462377	89462377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	147	622	0	ENST00000336596.2:c.1849G>A	p.Asp617Asn	p.D617N	ENST00000336596	NM_005233.5	617	Gat/Aat																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119585457	119585457	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	104	525	0	ENST00000316626.5:c.928C>G	p.His310Asp	p.H310D	ENST00000316626		310	Cat/Gat																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202736	128202736	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	95	571	1	ENST00000341105.2:c.984G>T	p.Gln328His	p.Q328H	ENST00000341105	NM_032638.4	328	caG/caT																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205191	128205191	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	76	339	0	ENST00000341105.2:c.250A>T	p.Met84Leu	p.M84L	ENST00000341105	NM_032638.4	84	Atg/Ttg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205715	128205715	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	153	639	1	ENST00000341105.2:c.160T>A	p.Ser54Thr	p.S54T	ENST00000341105	NM_032638.4	54	Tcg/Acg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374250	138374250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	144	506	0	ENST00000289153.2:c.3194G>A	p.Arg1065Gln	p.R1065Q	ENST00000289153	NM_006219.2	1065	cGg/cAg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417759	138417759	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	64	408	0	ENST00000289153.2:c.1760A>T	p.Asp587Val	p.D587V	ENST00000289153	NM_006219.2	587	gAt/gTt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138478044	138478044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	95	556	0	ENST00000289153.2:c.142C>T	p.Arg48Trp	p.R48W	ENST00000289153	NM_006219.2	48	Cgg/Tgg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664511	138664511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	53	372	1	ENST00000330315.3:c.1054G>A	p.Glu352Lys	p.E352K	ENST00000330315	NM_023067.3	352	Gag/Aag																																																																															
ATR	545	MSKCC	GRCh37	3	142231145	142231145	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	76	440	0	ENST00000350721.4:c.4809A>C	p.Lys1603Asn	p.K1603N	ENST00000350721	NM_001184.3	1603	aaA/aaC																																																																															
ATR	545	MSKCC	GRCh37	3	142281073	142281073	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	99	435	0	ENST00000350721.4:c.1170+1G>T		p.X390_splice	ENST00000350721	NM_001184.3	390																																																																																
MAP3K13	9175	MSKCC	GRCh37	3	185155333	185155333	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	97	404	0	ENST00000265026.3:c.574G>T	p.Val192Leu	p.V192L	ENST00000265026	NM_004721.4	192	Gtg/Ttg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127273	55127273	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	116	463	0	ENST00000257290.5:c.61A>T	p.Ile21Phe	p.I21F	ENST00000257290	NM_006206.4	21	Atc/Ttc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55130031	55130031	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	121	593	0	ENST00000257290.5:c.565T>C	p.Cys189Arg	p.C189R	ENST00000257290	NM_006206.4	189	Tgt/Cgt																																																																															
KDR	3791	MSKCC	GRCh37	4	55955592	55955592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	116	671	1	ENST00000263923.4:c.3353G>T	p.Arg1118Leu	p.R1118L	ENST00000263923	NM_002253.2	1118	cGa/cTa																																																																															
KDR	3791	MSKCC	GRCh37	4	55962480	55962480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	70	415	0	ENST00000263923.4:c.2644C>A	p.Leu882Ile	p.L882I	ENST00000263923	NM_002253.2	882	Ctc/Atc																																																																															
KDR	3791	MSKCC	GRCh37	4	55968123	55968123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	129	541	0	ENST00000263923.4:c.2207C>T	p.Thr736Ile	p.T736I	ENST00000263923	NM_002253.2	736	aCc/aTc																																																																															
KDR	3791	MSKCC	GRCh37	4	55979582	55979582	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	124	553	0	ENST00000263923.4:c.865T>G	p.Leu289Val	p.L289V	ENST00000263923	NM_002253.2	289	Ttg/Gtg																																																																															
KDR	3791	MSKCC	GRCh37	4	55980315	55980315	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	104	551	0	ENST00000263923.4:c.776A>T	p.Asn259Ile	p.N259I	ENST00000263923	NM_002253.2	259	aAc/aTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467563	66467563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	88	381	0	ENST00000273854.3:c.706G>T	p.Val236Leu	p.V236L	ENST00000273854	NM_004439.5	236	Gtg/Ttg																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84384048	84384048	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	138	467	0	ENST00000321945.7:c.804G>T	p.Lys268Asn	p.K268N	ENST00000321945	NM_139076.2	268	aaG/aaT																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84384051	84384051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	121	454	0	ENST00000321945.7:c.801G>T	p.Glu267Asp	p.E267D	ENST00000321945	NM_139076.2	267	gaG/gaT																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99850069	99850069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	117	588	0	ENST00000280892.6:c.55G>T	p.Ala19Ser	p.A19S	ENST00000280892	NM_001130678.1	19	Gcg/Tcg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244264	153244264	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	104	282	0	ENST00000281708.4:c.1893G>C	p.Gln631His	p.Q631H	ENST00000281708	NM_033632.3	631	caG/caC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524828	187524828	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	99	483	0	ENST00000441802.2:c.10852G>T	p.Asp3618Tyr	p.D3618Y	ENST00000441802	NM_005245.3	3618	Gat/Tat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187525016	187525016	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	112	490	0	ENST00000441802.2:c.10664C>A	p.Ser3555Tyr	p.S3555Y	ENST00000441802	NM_005245.3	3555	tCt/tAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187535414	187535414	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	134	504	0	ENST00000441802.2:c.9160T>G	p.Ser3054Ala	p.S3054A	ENST00000441802	NM_005245.3	3054	Tct/Gct																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542188	187542188	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	87	381	0	ENST00000441802.2:c.5552A>T	p.Asp1851Val	p.D1851V	ENST00000441802	NM_005245.3	1851	gAc/gTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542543	187542543	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	113	507	0	ENST00000441802.2:c.5197T>A	p.Tyr1733Asn	p.Y1733N	ENST00000441802	NM_005245.3	1733	Tac/Aac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549437	187549437	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	123	470	0	ENST00000441802.2:c.4681T>C	p.Trp1561Arg	p.W1561R	ENST00000441802	NM_005245.3	1561	Tgg/Cgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584578	187584578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	76	463	0	ENST00000441802.2:c.3455C>A	p.Ser1152Tyr	p.S1152Y	ENST00000441802	NM_005245.3	1152	tCt/tAt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31429599	31429599	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	183	682	0	ENST00000344624.3:c.3199T>G	p.Leu1067Val	p.L1067V	ENST00000344624		1067	Ttg/Gtg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160562	56160562	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	96	283	0	ENST00000399503.3:c.836T>A	p.Phe279Tyr	p.F279Y	ENST00000399503	NM_005921.1	279	tTt/tAt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754823	57754823	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	48	284	0	ENST00000274289.3:c.367C>A	p.Gln123Lys	p.Q123K	ENST00000274289	NM_006622.3	123	Caa/Aaa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755538	57755538	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	118	409	0	ENST00000274289.3:c.249C>G	p.Cys83Trp	p.C83W	ENST00000274289	NM_006622.3	83	tgC/tgG																																																																															
MSH3	4437	MSKCC	GRCh37	5	79966028	79966028	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201748817		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	144	692	0	ENST00000265081.6:c.692C>T	p.Pro231Leu	p.P231L	ENST00000265081	NM_002439.4	231	cCg/cTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	80024726	80024726	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	114	664	0	ENST00000265081.6:c.1510G>C	p.Ala504Pro	p.A504P	ENST00000265081	NM_002439.4	504	Gct/Cct																																																																															
APC	324	MSKCC	GRCh37	5	112170734	112170734	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	86	463	0	ENST00000257430.4:c.1830T>A	p.Asp610Glu	p.D610E	ENST00000257430	NM_000038.5	610	gaT/gaA																																																																															
APC	324	MSKCC	GRCh37	5	112170770	112170770	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	130	491	0	ENST00000257430.4:c.1866C>G	p.Tyr622Ter	p.Y622*	ENST00000257430	NM_000038.5	622	taC/taG																																																																															
APC	324	MSKCC	GRCh37	5	112170823	112170823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	123	486	0	ENST00000257430.4:c.1919G>A	p.Arg640Gln	p.R640Q	ENST00000257430	NM_000038.5	640	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112176305	112176305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	102	427	0	ENST00000257430.4:c.5014G>A	p.Gly1672Arg	p.G1672R	ENST00000257430	NM_000038.5	1672	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112178094	112178094	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	99	445	0	ENST00000257430.4:c.6803C>G	p.Thr2268Ser	p.T2268S	ENST00000257430	NM_000038.5	2268	aCc/aGc																																																																															
APC	324	MSKCC	GRCh37	5	112179567	112179567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	67	394	1	ENST00000257430.4:c.8276G>A	p.Arg2759His	p.R2759H	ENST00000257430	NM_000038.5	2759	cGt/cAt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515373	149515373	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	113	454	0	ENST00000261799.4:c.109C>G	p.Pro37Ala	p.P37A	ENST00000261799	NM_002609.3	37	Ccc/Gcc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517960	176517960	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	75	553	0	ENST00000292408.4:c.458A>C	p.Gln153Pro	p.Q153P	ENST00000292408	NM_213647.1	153	cAg/cCg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637649	176637649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	186	656	0	ENST00000439151.2:c.2249C>A	p.Ala750Asp	p.A750D	ENST00000439151	NM_022455.4	750	gCt/gAt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176666826	176666826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	114	596	0	ENST00000439151.2:c.4262G>A	p.Gly1421Glu	p.G1421E	ENST00000439151	NM_022455.4	1421	gGa/gAa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707728	176707728	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	128	459	1	ENST00000439151.2:c.5785G>T	p.Gly1929Trp	p.G1929W	ENST00000439151	NM_022455.4	1929	Ggg/Tgg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176722430	176722430	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	111	480	0	ENST00000439151.2:c.8061T>A	p.Ser2687Arg	p.S2687R	ENST00000439151	NM_022455.4	2687	agT/agA																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056421	180056421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	66	301	0	ENST00000261937.6:c.823C>T	p.Arg275Trp	p.R275W	ENST00000261937	NM_182925.4	275	Cgg/Tgg																																																																															
IRF4	3662	MSKCC	GRCh37	6	401679	401679	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	82	429	0	ENST00000380956.4:c.1001T>A	p.Ile334Asn	p.I334N	ENST00000380956	NM_001195286.1	334	aTc/aAc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671194	30671194	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	140	616	0	ENST00000376406.3:c.5682+1G>C		p.X1894_splice	ENST00000376406	NM_014641.2	1894																																																																																
MDC1	9656	MSKCC	GRCh37	6	30671679	30671679	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	106	487	0	ENST00000376406.3:c.5281G>C	p.Val1761Leu	p.V1761L	ENST00000376406	NM_014641.2	1761	Gtg/Ctg																																																																															
STK19	8859	MSKCC	GRCh37	6	31947323	31947323	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	96	412	0	ENST00000375331.2:c.796G>T	p.Glu266Ter	p.E266*	ENST00000375331	NM_004197.1	266	Gaa/Taa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32183003	32183003	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	66	398	0	ENST00000375023.3:c.2021G>T	p.Arg674Ile	p.R674I	ENST00000375023	NM_004557.3	674	aGa/aTa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188347	32188347	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	147	588	0	ENST00000375023.3:c.994T>A	p.Cys332Ser	p.C332S	ENST00000375023	NM_004557.3	332	Tgc/Agc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800585	32800585	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	158	671	0	ENST00000374899.4:c.962T>A	p.Ile321Asn	p.I321N	ENST00000374899	NM_018833.2	321	aTc/aAc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818159	32818159	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	165	641	0	ENST00000354258.4:c.1366G>T	p.Glu456Ter	p.E456*	ENST00000354258	NM_000593.5	456	Gaa/Taa																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821071	32821071	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	176	823	2	ENST00000354258.4:c.523G>T	p.Glu175Ter	p.E175*	ENST00000354258	NM_000593.5	175	Gag/Tag																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652067	36652067	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs4986867		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	139	550	0	ENST00000244741.5:c.189C>A	p.Phe63Leu	p.F63L	ENST00000244741	NM_000389.4	63	ttC/ttA																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120705	94120705	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	87	394	0	ENST00000369303.4:c.346C>G	p.Leu116Val	p.L116V	ENST00000369303	NM_004440.3	116	Ctg/Gtg																																																																															
FYN	2534	MSKCC	GRCh37	6	112029198	112029198	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	138	428	0	ENST00000368678.4:c.370T>A	p.Ser124Thr	p.S124T	ENST00000368678		124	Tcc/Acc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117647406	117647406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	110	671	2	ENST00000368508.3:c.5538G>T	p.Glu1846Asp	p.E1846D	ENST00000368508	NM_002944.2	1846	gaG/gaT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710660	117710660	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	76	393	0	ENST00000368508.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000368508	NM_002944.2	538	Gaa/Taa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117717392	117717392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	107	500	0	ENST00000368508.3:c.815G>A	p.Gly272Asp	p.G272D	ENST00000368508	NM_002944.2	272	gGt/gAt																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519293	137519293	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	106	434	0	ENST00000367739.4:c.1345A>T	p.Ile449Leu	p.I449L	ENST00000367739	NM_000416.2	449	Ata/Tta																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192607	138192607	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	115	441	2	ENST00000237289.4:c.243G>T	p.Lys81Asn	p.K81N	ENST00000237289	NM_001270507.1	81	aaG/aaT																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200300	138200300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	47	342	0	ENST00000237289.4:c.1718G>A	p.Ser573Asn	p.S573N	ENST00000237289	NM_001270507.1	573	aGc/aAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157406041	157406041	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	58	324	0	ENST00000346085.5:c.2281+2T>G		p.X761_splice	ENST00000346085	NM_020732.3	761																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157469914	157469914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	105	479	1	ENST00000346085.5:c.2708G>A	p.Gly903Glu	p.G903E	ENST00000346085	NM_020732.3	903	gGg/gAg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157505364	157505364	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	108	375	1	ENST00000346085.5:c.3346-1G>T		p.X1116_splice	ENST00000346085	NM_020732.3	1116																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157527508	157527508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	125	382	1	ENST00000346085.5:c.5233G>A	p.Glu1745Lys	p.E1745K	ENST00000346085	NM_020732.3	1745	Gag/Aag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528426	157528426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	117	400	1	ENST00000346085.5:c.6151G>A	p.Gly2051Ser	p.G2051S	ENST00000346085	NM_020732.3	2051	Ggc/Agc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739819	41739819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	108	419	0	ENST00000242208.4:c.154C>A	p.Pro52Thr	p.P52T	ENST00000242208	NM_002192.2	52	Cca/Aca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55220353	55220353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	86	383	0	ENST00000275493.2:c.743G>A	p.Cys248Tyr	p.C248Y	ENST00000275493	NM_005228.3	248	tGc/tAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55270264	55270264	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	116	649	0	ENST00000275493.2:c.3217C>A	p.Pro1073Thr	p.P1073T	ENST00000275493	NM_005228.3	1073	Ccc/Acc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509897	106509897	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	98	434	1	ENST00000359195.3:c.1891C>A	p.Leu631Met	p.L631M	ENST00000359195	NM_002649.2	631	Ctg/Atg																																																																															
MET	4233	MSKCC	GRCh37	7	116339478	116339478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	76	259	0	ENST00000397752.3:c.340G>A	p.Asp114Asn	p.D114N	ENST00000397752	NM_000245.2	114	Gat/Aat																																																																															
MET	4233	MSKCC	GRCh37	7	116339946	116339946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	113	453	0	ENST00000397752.3:c.808G>T	p.Asp270Tyr	p.D270Y	ENST00000397752	NM_000245.2	270	Gat/Tat																																																																															
MET	4233	MSKCC	GRCh37	7	116423402	116423402	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	76	297	0	ENST00000397752.3:c.3677C>A	p.Ala1226Asp	p.A1226D	ENST00000397752	NM_000245.2	1226	gCc/gAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151842256	151842256	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	121	335	0	ENST00000262189.6:c.14156T>A	p.Val4719Asp	p.V4719D	ENST00000262189	NM_170606.2	4719	gTc/gAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845234	151845234	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199858308		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	90	326	0	ENST00000262189.6:c.13778A>G	p.Asn4593Ser	p.N4593S	ENST00000262189	NM_170606.2	4593	aAt/aGt																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540330	23540330	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	104	457	0	ENST00000380871.4:c.73C>A	p.Pro25Thr	p.P25T	ENST00000380871	NM_006167.3	25	Ccg/Acg																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194674	29194674	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	137	593	2	ENST00000240100.2:c.1054G>T	p.Glu352Ter	p.E352*	ENST00000240100	NM_001394.6	352	Gag/Tag																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38186915	38186915	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	162	678	0	ENST00000317025.8:c.1562A>G	p.Gln521Arg	p.Q521R	ENST00000317025	NM_023034.1	521	cAa/cGa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205214	38205214	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	165	646	0	ENST00000317025.8:c.476A>T	p.Lys159Ile	p.K159I	ENST00000317025	NM_023034.1	159	aAa/aTa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69058479	69058479	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	114	510	0	ENST00000288368.4:c.4123C>T	p.Gln1375Ter	p.Q1375*	ENST00000288368	NM_024870.2	1375	Caa/Taa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69069654	69069654	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	102	549	0	ENST00000288368.4:c.4329G>T	p.Gln1443His	p.Q1443H	ENST00000288368	NM_024870.2	1443	caG/caT																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978472	70978472	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	51	270	0	ENST00000276594.2:c.1181A>G	p.Glu394Gly	p.E394G	ENST00000276594	NM_024504.3	394	gAa/gGa																																																																															
NBN	4683	MSKCC	GRCh37	8	90965883	90965883	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	64	213	0	ENST00000265433.3:c.1434C>G	p.Cys478Trp	p.C478W	ENST00000265433	NM_002485.4	478	tgC/tgG																																																																															
NBN	4683	MSKCC	GRCh37	8	90967727	90967727	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	43	218	0	ENST00000265433.3:c.1181G>T	p.Arg394Ile	p.R394I	ENST00000265433	NM_002485.4	394	aGa/aTa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117869549	117869549	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	118	554	0	ENST00000297338.2:c.645T>A	p.Tyr215Ter	p.Y215*	ENST00000297338	NM_006265.2	215	taT/taA																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741506	145741506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	93	603	1	ENST00000428558.2:c.997G>T	p.Ala333Ser	p.A333S	ENST00000428558	NM_004260.3	333	Gct/Tct																																																																															
JAK2	3717	MSKCC	GRCh37	9	5089825	5089825	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	66	347	0	ENST00000381652.3:c.2723A>T	p.Asp908Val	p.D908V	ENST00000381652	NM_004972.3	908	gAc/gTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8317943	8317943	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	51	341	0	ENST00000356435.5:c.5671-1G>A		p.X1891_splice	ENST00000356435		1891																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8319833	8319833	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	86	309	0	ENST00000356435.5:c.5668G>T	p.Glu1890Ter	p.E1890*	ENST00000356435		1890	Gag/Tag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500886	8500886	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	136	519	0	ENST00000356435.5:c.1996C>A	p.Pro666Thr	p.P666T	ENST00000356435		666	Cct/Act																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974714	21974714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	51	323	0	ENST00000304494.5:c.113C>T	p.Pro38Leu	p.P38L	ENST00000304494	NM_000077.4	38	cCc/cTc																																																																															
TEK	7010	MSKCC	GRCh37	9	27185619	27185619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	155	611	0	ENST00000380036.4:c.1319C>T	p.Ser440Phe	p.S440F	ENST00000380036	NM_000459.3	440	tCt/tTt																																																																															
TEK	7010	MSKCC	GRCh37	9	27197357	27197357	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	142	707	0	ENST00000380036.4:c.1669A>G	p.Thr557Ala	p.T557A	ENST00000380036	NM_000459.3	557	Acc/Gcc																																																																															
TEK	7010	MSKCC	GRCh37	9	27212754	27212754	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	143	626	0	ENST00000380036.4:c.2736C>G	p.Asp912Glu	p.D912E	ENST00000380036	NM_000459.3	912	gaC/gaG																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80336327	80336327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	89	330	0	ENST00000286548.4:c.992C>A	p.Ala331Asp	p.A331D	ENST00000286548	NM_002072.3	331	gCc/gAc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87317121	87317121	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	98	418	0	ENST00000277120.3:c.260T>A	p.Val87Asp	p.V87D	ENST00000277120		87	gTt/gAt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87482164	87482164	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	137	549	0	ENST00000277120.3:c.1451C>G	p.Ala484Gly	p.A484G	ENST00000277120		484	gCc/gGc																																																																															
SYK	6850	MSKCC	GRCh37	9	93641074	93641074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	122	461	0	ENST00000375746.1:c.1420C>G	p.Leu474Val	p.L474V	ENST00000375746	NM_001174167.1	474	Ctg/Gtg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231231	98231231	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	99	414	0	ENST00000331920.6:c.2052G>T	p.Glu684Asp	p.E684D	ENST00000331920	NM_000264.3	684	gaG/gaT																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231356	98231356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	86	397	0	ENST00000331920.6:c.1927C>T	p.Pro643Ser	p.P643S	ENST00000331920	NM_000264.3	643	Cct/Tct																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98238404	98238404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	84	302	0	ENST00000331920.6:c.1640G>A	p.Ser547Asn	p.S547N	ENST00000331920	NM_000264.3	547	aGc/aAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98268715	98268715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	104	404	0	ENST00000331920.6:c.368C>T	p.Thr123Ile	p.T123I	ENST00000331920	NM_000264.3	123	aCc/aTc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249447	110249447	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	189	892	0	ENST00000374672.4:c.1126C>G	p.Pro376Ala	p.P376A	ENST00000374672	NM_004235.4	376	Cca/Gca																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127912107	127912107	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	91	394	0	ENST00000373547.4:c.763G>T	p.Val255Leu	p.V255L	ENST00000373547	NM_002721.4	255	Gta/Tta																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128420058	128420058	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	139	603	0	ENST00000265960.3:c.370T>A	p.Phe124Ile	p.F124I	ENST00000265960	NM_001006617.1	124	Ttt/Att																																																																															
TSC1	7248	MSKCC	GRCh37	9	135778118	135778118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	103	517	0	ENST00000298552.3:c.2265G>T	p.Gln755His	p.Q755H	ENST00000298552	NM_001162426.1	755	caG/caT																																																																															
TSC1	7248	MSKCC	GRCh37	9	135782706	135782706	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	106	522	1	ENST00000298552.3:c.1315C>A	p.Leu439Met	p.L439M	ENST00000298552	NM_001162426.1	439	Ctg/Atg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137293594	137293594	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	168	891	0	ENST00000481739.1:c.145T>G	p.Ser49Ala	p.S49A	ENST00000481739	NM_002957.4	49	Tct/Gct																																																																															
RXRA	6256	MSKCC	GRCh37	9	137309172	137309172	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs145832863		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	109	574	0	ENST00000481739.1:c.779C>T	p.Ser260Leu	p.S260L	ENST00000481739	NM_002957.4	260	tCg/tTg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139565414	139565414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	138	583	2	ENST00000308874.7:c.584C>T	p.Ala195Val	p.A195V	ENST00000308874		195	gCa/gTa																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139815490	139815490	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	78	402	1	ENST00000247668.2:c.961G>C	p.Val321Leu	p.V321L	ENST00000247668	NM_021138.3	321	Gtg/Ctg																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317557	1317557	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	101	473	1				ENST00000381566																																																																																		
ZRSR2	8233	MSKCC	GRCh37	X	15822262	15822262	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	120	409	0	ENST00000307771.7:c.341A>G	p.Gln114Arg	p.Q114R	ENST00000307771	NM_005089.3	114	cAg/cGg																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841306	15841306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	188	568	1	ENST00000307771.7:c.1390C>T	p.Arg464Cys	p.R464C	ENST00000307771	NM_005089.3	464	Cgt/Tgt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922964	39922964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	109	459	0	ENST00000378444.4:c.3744G>T	p.Gln1248His	p.Q1248H	ENST00000378444	NM_001123385.1	1248	caG/caT																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932495	39932495	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	166	676	0	ENST00000378444.4:c.2104C>A	p.Leu702Met	p.L702M	ENST00000378444	NM_001123385.1	702	Ctg/Atg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934115	39934115	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	107	473	0	ENST00000378444.4:c.484A>T	p.Thr162Ser	p.T162S	ENST00000378444	NM_001123385.1	162	Aca/Tca																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44911035	44911035	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	103	497	0	ENST00000377967.4:c.736T>G	p.Leu246Val	p.L246V	ENST00000377967	NM_021140.2	246	Tta/Gta																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44919275	44919275	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	33	260	0	ENST00000377967.4:c.1203G>C	p.Leu401Phe	p.L401F	ENST00000377967	NM_021140.2	401	ttG/ttC																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929103	44929103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	143	486	0	ENST00000377967.4:c.2203G>A	p.Gly735Arg	p.G735R	ENST00000377967	NM_021140.2	735	Gga/Aga																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938515	44938515	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	161	587	1	ENST00000377967.4:c.3063G>A	p.Trp1021Ter	p.W1021*	ENST00000377967	NM_021140.2	1021	tgG/tgA																																																																															
RBM10	8241	MSKCC	GRCh37	X	47035926	47035926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	111	684	0	ENST00000329236.7:c.373G>A	p.Val125Met	p.V125M	ENST00000329236	NM_001204466.1	125	Gtg/Atg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038889	47038889	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	100	542	0	ENST00000329236.7:c.665A>T	p.Asn222Ile	p.N222I	ENST00000329236	NM_001204466.1	222	aAt/aTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041661	47041661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	139	688	2	ENST00000329236.7:c.1652C>T	p.Thr551Ile	p.T551I	ENST00000329236	NM_001204466.1	551	aCa/aTa																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650616	48650616	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	159	631	0	ENST00000376670.3:c.586C>A	p.Leu196Met	p.L196M	ENST00000376670	NM_002049.3	196	Ctg/Atg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53253994	53253994	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	123	585	0	ENST00000375401.3:c.78C>A	p.Asp26Glu	p.D26E	ENST00000375401	NM_004187.3	26	gaC/gaA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410526	63410526	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	77	469	0	ENST00000330258.3:c.2641C>T	p.Arg881Ter	p.R881*	ENST00000330258	NM_152424.3	881	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411472	63411472	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	77	769	0	ENST00000330258.3:c.1695G>T	p.Gln565His	p.Q565H	ENST00000330258	NM_152424.3	565	caG/caT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413082	63413082	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	81	643	0	ENST00000330258.3:c.85G>C	p.Ala29Pro	p.A29P	ENST00000330258	NM_152424.3	29	Gcc/Ccc																																																																															
AR	367	MSKCC	GRCh37	X	66766562	66766562	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	208	818	0	ENST00000374690.3:c.1574G>C	p.Gly525Ala	p.G525A	ENST00000374690	NM_000044.3	525	gGc/gCc																																																																															
MED12	9968	MSKCC	GRCh37	X	70342192	70342192	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	83	423	0	ENST00000374080.3:c.1244A>C	p.Gln415Pro	p.Q415P	ENST00000374080		415	cAg/cCg																																																																															
MED12	9968	MSKCC	GRCh37	X	70349020	70349020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	135	601	0	ENST00000374080.3:c.3532C>T	p.His1178Tyr	p.H1178Y	ENST00000374080		1178	Cac/Tac																																																																															
MED12	9968	MSKCC	GRCh37	X	70352336	70352336	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	111	567	0	ENST00000374080.3:c.4363C>T	p.Gln1455Ter	p.Q1455*	ENST00000374080		1455	Cag/Tag																																																																															
MED12	9968	MSKCC	GRCh37	X	70354956	70354956	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	34	481	1	ENST00000374080.3:c.4878G>T	p.Glu1626Asp	p.E1626D	ENST00000374080		1626	gaG/gaT																																																																															
ATRX	546	MSKCC	GRCh37	X	76889090	76889090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	128	638	0	ENST00000373344.5:c.4920G>C	p.Lys1640Asn	p.K1640N	ENST00000373344	NM_000489.3	1640	aaG/aaC																																																																															
ATRX	546	MSKCC	GRCh37	X	76918876	76918876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	93	642	0	ENST00000373344.5:c.4115G>T	p.Arg1372Ile	p.R1372I	ENST00000373344	NM_000489.3	1372	aGa/aTa																																																																															
ATRX	546	MSKCC	GRCh37	X	76938313	76938313	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	102	538	0	ENST00000373344.5:c.2435C>A	p.Ser812Tyr	p.S812Y	ENST00000373344	NM_000489.3	812	tCt/tAt																																																																															
BTK	695	MSKCC	GRCh37	X	100617594	100617594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	142	679	1	ENST00000308731.7:c.475G>A	p.Ala159Thr	p.A159T	ENST00000308731	NM_000061.2	159	Gcc/Acc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123171438	123171438	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	87	545	0	ENST00000218089.9:c.350T>A	p.Leu117His	p.L117H	ENST00000218089	NM_001042749.1	117	cTt/cAt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123179018	123179018	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	75	414	0	ENST00000218089.9:c.467G>C	p.Ser156Thr	p.S156T	ENST00000218089	NM_001042749.1	156	aGt/aCt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123191727	123191727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	61	410	0	ENST00000218089.9:c.1316G>A	p.Arg439His	p.R439H	ENST00000218089	NM_001042749.1	439	cGt/cAt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123217366	123217366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	100	582	0	ENST00000218089.9:c.3020C>A	p.Ser1007Tyr	p.S1007Y	ENST00000218089	NM_001042749.1	1007	tCt/tAt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123224422	123224422	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	109	438	1	ENST00000218089.9:c.3278-3C>T		p.X1093_splice	ENST00000218089	NM_001042749.1	1093																																																																																
FAM58A	92002	MSKCC	GRCh37	X	152860071	152860071	+	synonymous_variant	Silent	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	48	615	0	ENST00000406277.2:c.357C>T	p.Ile119=	p.I119=	ENST00000406277	NM_152274.4	119	atC/atT																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918845	50918847	+	missense_variant,splice_region_variant	Missense_Mutation	ONP	GAG	GAG	TAA			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	86	587	0	ENST00000440232.2:c.2715_2717delinsTAA	p.Glu905_Arg906delinsAspLys	p.E905_R906delinsDK	ENST00000440232	NM_002691.3	905	gaGAGg/gaTAAg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16242646	16242646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	57	638	3	ENST00000375759.3:c.1267C>T	p.Arg423Cys	p.R423C	ENST00000375759	NM_015001.2	423	Cgc/Tgc																																																																															
SESN2	83667	MSKCC	GRCh37	1	28605660	28605660	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	55	719	0	ENST00000253063.3:c.1264A>G	p.Lys422Glu	p.K422E	ENST00000253063	NM_031459.4	422	Aag/Gag																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115262276	115262276	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	60	715	0	ENST00000438362.2:c.2278G>T	p.Gly760Ter	p.G760*	ENST00000438362	NM_001242891.1	760	Gga/Tga																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115275364	115275364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	52	677	1	ENST00000438362.2:c.1049C>T	p.Thr350Met	p.T350M	ENST00000438362	NM_001242891.1	350	aCg/aTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120480570	120480571	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	49	519	0	ENST00000256646.2:c.3246dupA	p.Ala1083SerfsTer17	p.A1083Sfs*17	ENST00000256646	NM_024408.3	1082	-/A																																																																															
AKT3	10000	MSKCC	GRCh37	1	243668583	243668583	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	49	490	1	ENST00000263826.5:c.1408C>T	p.Gln470Ter	p.Q470*	ENST00000263826	NM_005465.4	470	Caa/Taa																																																																															
RET	5979	MSKCC	GRCh37	10	43608301	43608301	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	119	774	3	ENST00000355710.3:c.1649G>T	p.Gly550Val	p.G550V	ENST00000355710	NM_020975.4	550	gGg/gTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	34	341	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
ATM	472	MSKCC	GRCh37	11	108175495	108175495	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	91	537	0	ENST00000278616.4:c.5590A>G	p.Thr1864Ala	p.T1864A	ENST00000278616	NM_000051.3	1864	Aca/Gca																																																																															
CBL	867	MSKCC	GRCh37	11	119170370	119170370	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	35	447	0	ENST00000264033.4:c.2600del	p.Gln867ArgfsTer38	p.Q867Rfs*38	ENST00000264033	NM_005188.3	867	cAg/cg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	442737	442737	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	47	582	0	ENST00000399788.2:c.1569del	p.Glu524SerfsTer13	p.E524Sfs*13	ENST00000399788	NM_001042603.1	523	ccC/cc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871053	12871053	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	45	325	0	ENST00000228872.4:c.285del	p.Gly97ValfsTer22	p.G97Vfs*22	ENST00000228872	NM_004064.3	94	Ccc/cc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18499650	18499650	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	55	707	0	ENST00000266497.5:c.1505A>G	p.Tyr502Cys	p.Y502C	ENST00000266497		502	tAt/tGt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21629929	21629929	+	splice_region_variant,intron_variant	Splice_Region	DEL	A	A	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	68	422	3	ENST00000421138.2:c.868-3delT		p.X290_splice	ENST00000421138		290																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49423188	49423188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	49	626	1	ENST00000301067.7:c.14071G>A	p.Val4691Ile	p.V4691I	ENST00000301067	NM_003482.3	4691	Gtc/Atc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56494882	56494882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	51	485	0	ENST00000267101.3:c.3239G>A	p.Arg1080His	p.R1080H	ENST00000267101	NM_001982.3	1080	cGt/cAt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	169	742	4	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21565435	21565435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	46	636	5	ENST00000382592.4:c.451C>T	p.Arg151Trp	p.R151W	ENST00000382592	NM_014572.2	151	Cgg/Tgg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041262	29041262	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	62	473	2	ENST00000282397.4:c.166delG	p.Glu56LysfsTer12	p.E56Kfs*12	ENST00000282397	NM_002019.4	56	Gaa/aa																																																																															
RAD51	5888	MSKCC	GRCh37	15	41001215	41001215	+	splice_region_variant,intron_variant	Splice_Region	DEL	T	T	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	40	404	2	ENST00000267868.3:c.344-3del		p.X115_splice	ENST00000267868	NM_002875.4	115																																																																																
IDH2	3418	MSKCC	GRCh37	15	90630711	90630711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	51	651	1	ENST00000330062.3:c.775G>A	p.Asp259Asn	p.D259N	ENST00000330062	NM_002168.2	259	Gat/Aat																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943625	9943625	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	55	616	0	ENST00000330684.3:c.1316T>C	p.Phe439Ser	p.F439S	ENST00000330684	NM_001134407.1	439	tTc/tCc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831056	72831056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	46	262	0	ENST00000268489.5:c.5525C>T	p.Pro1842Leu	p.P1842L	ENST00000268489	NM_006885.3	1842	cCa/cTa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974899	15974899	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	75	476	0	ENST00000268712.3:c.3976C>T	p.Arg1326Ter	p.R1326*	ENST00000268712	NM_006311.3	1326	Cga/Tga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627688	37627688	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	151	924	2	ENST00000447079.4:c.1607del	p.Pro536HisfsTer74	p.P536Hfs*74	ENST00000447079	NM_015083.1	535	Ccc/cc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	65	442	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437569	56437569	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	81	628	1	ENST00000407977.2:c.893del	p.Cys298LeufsTer121	p.C298Lfs*121	ENST00000407977		298	tGt/tt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78897444	78897444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	94	651	0	ENST00000306801.3:c.2779C>T	p.Arg927Trp	p.R927W	ENST00000306801	NM_020761.2	927	Cgg/Tgg																																																																															
PMAIP1	5366	MSKCC	GRCh37	18	57569908	57569910	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	33	321	0	ENST00000316660.6:c.90_92del	p.Arg31del	p.R31del	ENST00000316660	NM_021127.2	30	AGG/-																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5225740	5225740	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	72	576	0	ENST00000357368.4:c.2492C>T	p.Ala831Val	p.A831V	ENST00000357368	NM_002850.3	831	gCa/gTa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355254	15355254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	26	327	1	ENST00000263377.2:c.2369C>T	p.Ala790Val	p.A790V	ENST00000263377	NM_058243.2	790	gCc/gTc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279905	18279905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	59	637	0	ENST00000222254.8:c.1988G>A	p.Gly663Asp	p.G663D	ENST00000222254	NM_005027.3	663	gGc/gAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	55	924	1	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210863	36210890	+	frameshift_variant	Frame_Shift_Del	DEL	CACCCCGGAGCCGGGCATGTGAGCCCTC	CACCCCGGAGCCGGGCATGTGAGCCCTC	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	88	745	0	ENST00000222270.7:c.620_647del	p.Arg207ProfsTer23	p.R207Pfs*23	ENST00000222270	NM_014727.1	205	gCACCCCGGAGCCGGGCATGTGAGCCCTCc/gc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213358	36213359	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	56	827	0	ENST00000222270.7:c.2561_2562del	p.Glu854AlafsTer34	p.E854Afs*34	ENST00000222270	NM_014727.1	852	aAG/a																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966267	25966267	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	39	374	0	ENST00000435504.4:c.2939T>C	p.Val980Ala	p.V980A	ENST00000435504		980	gTt/gCt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26101046	26101046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	43	560	2	ENST00000435504.4:c.46G>A	p.Ala16Thr	p.A16T	ENST00000435504		16	Gcc/Acc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99193586	99193586	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	28	367	0	ENST00000074304.5:c.2781G>T	p.Gln927His	p.Q927H	ENST00000074304	NM_001134224.1	927	caG/caT																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198285158	198285158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	48	454	2	ENST00000335508.6:c.409G>A	p.Ala137Thr	p.A137T	ENST00000335508	NM_012433.2	137	Gca/Aca																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	103	418	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204810	128204810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	72	886	0	ENST00000341105.2:c.631G>A	p.Val211Ile	p.V211I	ENST00000341105	NM_032638.4	211	Gtc/Atc																																																																															
ATR	545	MSKCC	GRCh37	3	142266679	142266679	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146504354		P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	48	661	0	ENST00000350721.4:c.3245G>A	p.Arg1082His	p.R1082H	ENST00000350721	NM_001184.3	1082	cGt/cAt																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169953085	169953085	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	47	561	0	ENST00000295797.4:c.169A>G	p.Met57Val	p.M57V	ENST00000295797	NM_002740.5	57	Atg/Gtg																																																																															
KIT	3815	MSKCC	GRCh37	4	55604677	55604677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	61	427	0	ENST00000288135.5:c.2885G>A	p.Ser962Asn	p.S962N	ENST00000288135	NM_000222.2	962	aGc/aAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245344	153245344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	43	548	0	ENST00000281708.4:c.1847C>T	p.Thr616Ile	p.T616I	ENST00000281708	NM_033632.3	616	aCa/aTa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	101	616	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945757	38945757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	49	300	0	ENST00000357387.3:c.4469C>T	p.Thr1490Met	p.T1490M	ENST00000357387	NM_152756.3	1490	aCg/aTg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950366	38950366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	38	424	0	ENST00000357387.3:c.3584G>T	p.Arg1195Ile	p.R1195I	ENST00000357387	NM_152756.3	1195	aGa/aTa																																																																															
APC	324	MSKCC	GRCh37	5	112177434	112177435	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	58	472	0	ENST00000257430.4:c.6149dupA	p.Lys2051GlufsTer9	p.K2051Efs*9	ENST00000257430	NM_000038.5	2048	cca/ccAa																																																																															
APC	324	MSKCC	GRCh37	5	112178369	112178369	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	49	558	0	ENST00000257430.4:c.7078G>T	p.Gly2360Cys	p.G2360C	ENST00000257430	NM_000038.5	2360	Ggt/Tgt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131977937	131977937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	54	445	0	ENST00000265335.6:c.3820G>A	p.Val1274Met	p.V1274M	ENST00000265335		1274	Gtg/Atg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287346	33287346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	40	489	0	ENST00000374542.5:c.1751C>T	p.Thr584Met	p.T584M	ENST00000374542	NM_001141970.1	584	aCg/aTg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	23	225	0	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	101	655	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141545617	141545617	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	66	820	0	ENST00000220592.5:c.2221A>G	p.Thr741Ala	p.T741A	ENST00000220592	NM_012154.3	741	Acc/Gcc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139404302	139404302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	98	700	0	ENST00000277541.6:c.2852G>A	p.Ser951Asn	p.S951N	ENST00000277541	NM_017617.3	951	aGt/aAt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933593	39933594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	16	183	0	ENST00000378444.4:c.1005dup	p.Ser336LeufsTer45	p.S336Lfs*45	ENST00000378444	NM_001123385.1	335	-/C																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223345	53223345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	58	308	0	ENST00000375401.3:c.4014G>T	p.Glu1338Asp	p.E1338D	ENST00000375401	NM_004187.3	1338	gaG/gaT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411530	63411530	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	51	445	0	ENST00000330258.3:c.1637del	p.Leu546CysfsTer16	p.L546Cfs*16	ENST00000330258	NM_152424.3	546	tTg/tg																																																																															
RHOA	387	MSKCC	GRCh37	3	49412898	49412898	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	247	817	0	ENST00000418115.1:c.125A>C	p.Tyr42Ser	p.Y42S	ENST00000418115	NM_001664.2	42	tAt/tCt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971024	21971024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	68	297	1	ENST00000304494.5:c.334C>T	p.Arg112Cys	p.R112C	ENST00000304494	NM_000077.4	112	Cgt/Tgt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946237	71946248	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TGAATCCTATGG	TGAATCCTATGG	-			P-0017217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	311	724	0	ENST00000298229.2:c.2496_2503+4del		p.X832_splice	ENST00000298229	NM_001567.3	832																																																																																
PIK3C2G	5288	MSKCC	GRCh37	12	18478035	18478035	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0017217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	168	755	0	ENST00000266497.5:c.1272+3A>G		p.X424_splice	ENST00000266497		424																																																																																
AKT1	207	MSKCC	GRCh37	14	105236758	105237081	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	CTGTGGGTGTAGACAGCTCAGACCCCGGTGCCCCACCTCCCTGCCACCTCCACCCACCCACAGCTCCAGTAGGAAGCCAACCTCTTAAAGCACGGCCAGCACGCTGCCATACTGCCAGGAAACTGAGACAGGGCCCCACAGATTGACACAGGGACCTGGGCCCTCAGAGCACTGCCTCCCACCCTGATCATTGGCACTCTCCAAAAGGAACCTTTTTAAATATTTAGATTTTAAAACATCTGAAGCCAAAAAAGCTGAACACTGCAGGCCTCTCTGAGTGTGGAGAGAAAAGGGAGTGGGCGGGGGCAGGCAGTGGCCCCTCAC	CTGTGGGTGTAGACAGCTCAGACCCCGGTGCCCCACCTCCCTGCCACCTCCACCCACCCACAGCTCCAGTAGGAAGCCAACCTCTTAAAGCACGGCCAGCACGCTGCCATACTGCCAGGAAACTGAGACAGGGCCCCACAGATTGACACAGGGACCTGGGCCCTCAGAGCACTGCCTCCCACCCTGATCATTGGCACTCTCCAAAAGGAACCTTTTTAAATATTTAGATTTTAAAACATCTGAAGCCAAAAAAGCTGAACACTGCAGGCCTCTCTGAGTGTGGAGAGAAAAGGGAGTGGGCGGGGGCAGGCAGTGGCCCCTCAC	-			P-0017217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	70	546	1	ENST00000349310.3:c.1363+1_1364-1del		p.X455_splice	ENST00000349310	NM_001014432.1	455																																																																																
TRAF7	84231	MSKCC	GRCh37	16	2223538	2223538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	286	731	0	ENST00000326181.6:c.1069G>A	p.Asp357Asn	p.D357N	ENST00000326181	NM_032271.2	357	Gac/Aac																																																																															
CDH1	999	MSKCC	GRCh37	16	68853266	68853270	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAG	GGGAG	-			P-0017217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	585	680	0	ENST00000261769.5:c.1650_1654del	p.Glu551PhefsTer2	p.E551Ffs*2	ENST00000261769	NM_004360.3	550	aGGGAG/a																																																																															
AXL	558	MSKCC	GRCh37	19	41744376	41744383	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GCCCCTGG	GCCCCTGG	-			P-0017217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	35	549	0	ENST00000301178.4:c.1001_1008del	p.Leu334ProfsTer2	p.L334Pfs*2	ENST00000301178	NM_021913.4	332	gtGCCCCTGGgc/gtgc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082307	16082307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	50	918	3	ENST00000281043.3:c.121G>A	p.Asp41Asn	p.D41N	ENST00000281043	NM_005378.4	41	Gac/Aac																																																																															
KIT	3815	MSKCC	GRCh37	4	55564569	55564569	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	55	643	0	ENST00000288135.5:c.457G>T	p.Gly153Trp	p.G153W	ENST00000288135	NM_000222.2	153	Ggg/Tgg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	29	251	0				ENST00000310581	NM_198253.2																																																																																	
ERBB2	2064	MSKCC	GRCh37	17	37880997	37880998	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TCT			P-0017633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	252	572	0	ENST00000269571.5:c.2326_2327insTCT	p.Gly776delinsValCys	p.G776delinsVC	ENST00000269571		776	ggt/gTCTgt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0018722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	198	467	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	313	412	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552822		P-0018722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	204	371	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																															
CALR	811	MSKCC	GRCh37	19	13051645	13051645	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375135016		P-0018722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	177	466	1	ENST00000316448.5:c.904G>A	p.Asp302Asn	p.D302N	ENST00000316448	NM_004343.3	302	Gat/Aat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0018722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	362	647	0	ENST00000304494.5:c.457+1G>A		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																																
MUTYH	4595	MSKCC	GRCh37	1	45798814	45798814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	191	514	1	ENST00000372115.3:c.375G>T	p.Gln125His	p.Q125H	ENST00000372115	NM_001048171.1	125	caG/caT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344574	118344574	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	90	346	1	ENST00000534358.1:c.2700G>T	p.Gln900His	p.Q900H	ENST00000534358	NM_005933.3	900	caG/caT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118362583	118362583	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	78	394	0	ENST00000534358.1:c.4944G>T	p.Lys1648Asn	p.K1648N	ENST00000534358	NM_005933.3	1648	aaG/aaT																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416702	121416702	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	215	505	0	ENST00000257555.6:c.131T>C	p.Leu44Pro	p.L44P	ENST00000257555		44	cTg/cCg																																																																															
POLE	5426	MSKCC	GRCh37	12	133245026	133245026	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs5744800		P-0018722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	310	511	0	ENST00000320574.5:c.2089C>T	p.Pro697Ser	p.P697S	ENST00000320574	NM_006231.2	697	Ccc/Tcc																																																																															
BLM	641	MSKCC	GRCh37	15	91292633	91292633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	95	285	0	ENST00000355112.3:c.135C>A	p.Asn45Lys	p.N45K	ENST00000355112	NM_000057.2	45	aaC/aaA																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830375	72830375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	19	157	1	ENST00000268489.5:c.6206C>T	p.Pro2069Leu	p.P2069L	ENST00000268489	NM_006885.3	2069	cCa/cTa																																																																															
MSI2	124540	MSKCC	GRCh37	17	55693386	55693386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1201	96	639	1	ENST00000284073.2:c.593G>A	p.Gly198Asp	p.G198D	ENST00000284073	NM_138962.2	198	gGc/gAc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4117551	4117551	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs201043794		P-0018722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	63	282	0	ENST00000262948.5:c.169T>C	p.Phe57Leu	p.F57L	ENST00000262948	NM_030662.3	57	Ttt/Ctt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229552	5229552	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	121	209	0	ENST00000357368.4:c.2299G>T	p.Glu767Ter	p.E767*	ENST00000357368	NM_002850.3	767	Gag/Tag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18961569	18961569	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	105	337	0	ENST00000262803.5:c.702G>T	p.Gln234His	p.Q234H	ENST00000262803	NM_002911.3	234	caG/caT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877331	40877331	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	137	249	0	ENST00000373198.4:c.2365A>T	p.Arg789Trp	p.R789W	ENST00000373198	NM_133170.3	789	Agg/Tgg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956531	93956531	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	40	268	0	ENST00000369303.4:c.2705C>G	p.Thr902Ser	p.T902S	ENST00000369303	NM_004440.3	902	aCt/aGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971046	21971046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	205	384	1	ENST00000361570.3:c.478G>A	p.Gly160Arg	p.G160R	ENST00000361570	NM_058195.3	160	Gga/Aga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971199	21971202	+	missense_variant	Missense_Mutation	ONP	CATC	CATC	TATT			P-0018722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	180	303	0	ENST00000304494.5:c.156_159delinsAATA	p.Met52_Met53delinsIleIle	p.M52_M53delinsII	ENST00000304494	NM_000077.4	52	atGATG/atAATA																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176132087	176132087	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	131	818	0	ENST00000367669.3:c.680G>T	p.Gly227Val	p.G227V	ENST00000367669	NM_022457.5	227	gGa/gTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426082	49426082	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	252	841	0	ENST00000301067.7:c.12406C>T	p.Gln4136Ter	p.Q4136*	ENST00000301067	NM_003482.3	4136	Cag/Tag																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589316	28589316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	229	658	0	ENST00000241453.7:c.2731C>A	p.Pro911Thr	p.P911T	ENST00000241453	NM_004119.2	911	Cca/Aca																																																																															
MGA	23269	MSKCC	GRCh37	15	41961930	41961930	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	72	489	0	ENST00000219905.7:c.838G>C	p.Glu280Gln	p.E280Q	ENST00000219905	NM_001164273.1	280	Gaa/Caa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50816240	50816241	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGA			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	69	362	0	ENST00000398568.2:c.1683_1685dup	p.Gly562dup	p.G562dup	ENST00000398568	NM_001042412.1	562	-/GGA																																																																															
TP53	7157	MSKCC	GRCh37	17	7574026	7574026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	540	792	0	ENST00000269305.4:c.1001G>T	p.Gly334Val	p.G334V	ENST00000269305	NM_001126112.2	334	gGg/gTg																																																																															
AXL	558	MSKCC	GRCh37	19	41726726	41726726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	129	865	2	ENST00000301178.4:c.271G>A	p.Asp91Asn	p.D91N	ENST00000301178	NM_021913.4	91	Gat/Aat																																																																															
XPO1	7514	MSKCC	GRCh37	2	61760992	61760992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	30	623	0	ENST00000401558.2:c.41G>A	p.Arg14His	p.R14H	ENST00000401558	NM_003400.3	14	cGt/cAt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021380	31021381	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	203	593	1	ENST00000375687.4:c.1379_1380delinsCT	p.Gly460Ala	p.G460A	ENST00000375687	NM_015338.5	460	gGG/gCT																																																																															
EP300	2033	MSKCC	GRCh37	22	41566510	41566510	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	314	617	0	ENST00000263253.7:c.4387C>G	p.Leu1463Val	p.L1463V	ENST00000263253	NM_001429.3	1463	Ctg/Gtg																																																																															
KIT	3815	MSKCC	GRCh37	4	55602743	55602743	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	84	606	0	ENST00000288135.5:c.2564A>T	p.Tyr855Phe	p.Y855F	ENST00000288135	NM_000222.2	855	tAt/tTt																																																																															
TET2	54790	MSKCC	GRCh37	4	106157188	106157188	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	186	524	0	ENST00000380013.4:c.2089C>A	p.Pro697Thr	p.P697T	ENST00000380013	NM_001127208.2	697	Cca/Aca																																																																															
TERT	7015	MSKCC	GRCh37	5	1295204	1295204	+	upstream_gene_variant	5'Flank	SNP	G	G	C			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	71	405	0				ENST00000310581	NM_198253.2																																																																																	
HLA-B	3106	MSKCC	GRCh37	6	31323175	31323175	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	276	746	0	ENST00000412585.2:c.814del	p.Val272TrpfsTer25	p.V272Wfs*25	ENST00000412585	NM_005514.6	272	Gtg/tg																																																																															
BRAF	673	MSKCC	GRCh37	7	140500278	140500278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	119	418	0	ENST00000288602.6:c.864G>T	p.Leu288Phe	p.L288F	ENST00000288602	NM_004333.4	288	ttG/ttT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021697	69021697	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	176	653	0	ENST00000288368.4:c.2985G>C	p.Met995Ile	p.M995I	ENST00000288368	NM_024870.2	995	atG/atC																																																																															
JAK2	3717	MSKCC	GRCh37	9	5022105	5022105	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	43	768	0	ENST00000381652.3:c.118C>A	p.Gln40Lys	p.Q40K	ENST00000381652	NM_004972.3	40	Cag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971026	21971026	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	191	557	0	ENST00000304494.5:c.332del	p.Gly111AlafsTer35	p.G111Afs*35	ENST00000304494	NM_000077.4	111	gGc/gc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249881	110249881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	457	683	1	ENST00000374672.4:c.794C>T	p.Pro265Leu	p.P265L	ENST00000374672	NM_004235.4	265	cCc/cTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405258	139405258	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	255	704	0	ENST00000277541.6:c.2588-1G>A		p.X863_splice	ENST00000277541	NM_017617.3	863																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	367	988	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0020841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	297	1071	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953883	32953884	+	splice_region_variant,intron_variant	Splice_Region	DEL	AC	AC	-			P-0020841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	132	587	0	ENST00000380152.3:c.8954-3_8954-2del		p.X2985_splice	ENST00000380152		2985																																																																																
CD276	80381	MSKCC	GRCh37	15	74005292	74005292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	93	921	1	ENST00000318443.5:c.1600G>A	p.Ala534Thr	p.A534T	ENST00000318443	NM_001024736.1	534	Gcc/Acc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971176	21971200	+	frameshift_variant	Frame_Shift_Del	DEL	TCCGCCACTCGGGCGCTGCCCATCA	TCCGCCACTCGGGCGCTGCCCATCA	-			P-0020841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	271	795	0	ENST00000304494.5:c.158_182del	p.Met53SerfsTer85	p.M53Sfs*85	ENST00000304494	NM_000077.4	53	aTGATGGGCAGCGCCCGAGTGGCGGAg/ag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	111	722	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	16	569	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MED12	9968	MSKCC	GRCh37	X	70344018	70344018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	175	1004	2	ENST00000374080.3:c.1754G>A	p.Arg585Gln	p.R585Q	ENST00000374080		585	cGa/cAa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	360	966	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	90	746	0	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	154	817	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	174	997	1	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849887	156849887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	228	1038	2	ENST00000524377.1:c.2143G>A	p.Val715Met	p.V715M	ENST00000524377	NM_002529.3	715	Gtg/Atg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	163	1155	9	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	151	644	13	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ERG	2078	MSKCC	GRCh37	21	39772564	39772564	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	111	521	0	ENST00000288319.7:c.677delG	p.Gly226ValfsTer65	p.G226Vfs*65	ENST00000288319	NM_182918.3	226	gGt/gt																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	141	745	17	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348566	89348568	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	239	1189	2	ENST00000301030.4:c.4382_4384delAGA	p.Lys1461del	p.K1461del	ENST00000301030	NM_001256183.1	1461	aAGAga/aga																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777134	9777134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	193	1052	1	ENST00000377346.4:c.898C>T	p.Arg300Cys	p.R300C	ENST00000377346	NM_005026.3	300	Cgt/Tgt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100462	8100462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	183	998	2	ENST00000346208.3:c.436G>A	p.Ala146Thr	p.A146T	ENST00000346208		146	Gcc/Acc																																																																															
AURKA	6790	MSKCC	GRCh37	20	54963247	54963247	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	102	546	3	ENST00000312783.6:c.7C>T	p.Arg3Ter	p.R3*	ENST00000312783	NM_198436.1	3	Cga/Tga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163554	32163554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	150	803	2	ENST00000375023.3:c.5672del	p.Gly1891AlafsTer13	p.G1891Afs*13	ENST00000375023	NM_004557.3	1891	gGc/gc																																																																															
CD274	29126	MSKCC	GRCh37	9	5466787	5466787	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	81	291	0	ENST00000381577.3:c.813del	p.Lys271AsnfsTer44	p.K271Nfs*44	ENST00000381577	NM_014143.3	270	Aaa/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991709	72991711	+	inframe_deletion	In_Frame_Del	DEL	GCA	GCA	-			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	64	210	10	ENST00000268489.5:c.2334_2336delTGC	p.Ala784del	p.A784del	ENST00000268489	NM_006885.3	778	gcTGCg/gcg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354393	354393	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1488869543		P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	245	1017	1	ENST00000262320.3:c.1165G>A	p.Ala389Thr	p.A389T	ENST00000262320	NM_003502.3	389	Gcg/Acg																																																																															
PGR	5241	MSKCC	GRCh37	11	100962610	100962610	+	splice_region_variant,intron_variant	Splice_Region	DEL	A	A	-			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	108	584	0	ENST00000325455.5:c.1790-3del		p.X597_splice	ENST00000325455	NM_001202474.3	597																																																																																
XPO1	7514	MSKCC	GRCh37	2	61726051	61726052	+	splice_region_variant,intron_variant	Splice_Region	DEL	AA	AA	-			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	101	485	1	ENST00000401558.2:c.591-4_591-3delTT		p.X197_splice	ENST00000401558	NM_003400.3	197																																																																																
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	205	949	12	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
SMO	6608	MSKCC	GRCh37	7	128829075	128829075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1247591045		P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	11	50	0	ENST00000249373.3:c.88del	p.Ala30ArgfsTer25	p.A30Rfs*25	ENST00000249373	NM_005631.4	28	cGg/cg																																																																															
RET	5979	MSKCC	GRCh37	10	43615143	43615143	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	62	1051	1	ENST00000355710.3:c.2557T>A	p.Ser853Thr	p.S853T	ENST00000355710	NM_020975.4	853	Tca/Aca																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	118	630	1	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																															
SDHA	6389	MSKCC	GRCh37	5	228384	228384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	116	582	0	ENST00000264932.6:c.706G>A	p.Ala236Thr	p.A236T	ENST00000264932	NM_004168.2	236	Gca/Aca																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78923344	78923344	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	119	644	0	ENST00000306801.3:c.3367C>T	p.Arg1123Ter	p.R1123*	ENST00000306801	NM_020761.2	1123	Cga/Tga																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38631981	38631981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	167	1083	3	ENST00000299084.4:c.471delT	p.Gln158SerfsTer16	p.Q158Sfs*16	ENST00000299084	NM_152594.2	156	cTt/ct																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391778	139391778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	162	933	2	ENST00000277541.6:c.6413C>T	p.Pro2138Leu	p.P2138L	ENST00000277541	NM_017617.3	2138	cCg/cTg																																																																															
PARP1	142	MSKCC	GRCh37	1	226552705	226552705	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	88	498	0	ENST00000366794.5:c.2656G>A	p.Val886Met	p.V886M	ENST00000366794	NM_001618.3	886	Gtg/Atg																																																																															
SUFU	51684	MSKCC	GRCh37	10	104264048	104264048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	206	877	0	ENST00000369902.3:c.139G>A	p.Asp47Asn	p.D47N	ENST00000369902	NM_016169.3	47	Gac/Aac																																																																															
PGR	5241	MSKCC	GRCh37	11	100999225	100999225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	216	941	0	ENST00000325455.5:c.577C>T	p.Arg193Trp	p.R193W	ENST00000325455	NM_001202474.3	193	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108143330	108143330	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	119	680	0	ENST00000278616.4:c.3149T>C	p.Leu1050Pro	p.L1050P	ENST00000278616	NM_000051.3	1050	cTt/cCt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864355	57864355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	173	935	1	ENST00000228682.2:c.1832G>A	p.Arg611Gln	p.R611Q	ENST00000228682	NM_005269.2	611	cGg/cAg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73347947	73347947	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	64	362	0	ENST00000377767.4:c.1114C>G	p.Leu372Val	p.L372V	ENST00000377767	NM_014953.3	372	Ctc/Gtc																																																																															
MGA	23269	MSKCC	GRCh37	15	42019540	42019540	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	160	996	1	ENST00000219905.7:c.3593T>C	p.Val1198Ala	p.V1198A	ENST00000219905	NM_001164273.1	1198	gTg/gCg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881303	37881303	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	184	929	0	ENST00000269571.5:c.2495G>T	p.Gly832Val	p.G832V	ENST00000269571		832	gGg/gTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349246	15349246	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	140	712	0	ENST00000263377.2:c.4031C>G	p.Thr1344Ser	p.T1344S	ENST00000263377	NM_058243.2	1344	aCc/aGc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260156	19260156	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	192	1005	0	ENST00000162023.5:c.137T>C	p.Ile46Thr	p.I46T	ENST00000162023		46	aTc/aCc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222938	36222938	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	245	1135	1	ENST00000222270.7:c.5572delC	p.Arg1858ValfsTer37	p.R1858Vfs*37	ENST00000222270	NM_014727.1	1856	gCc/gc																																																																															
ALK	238	MSKCC	GRCh37	2	30142939	30142939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	223	1155	1	ENST00000389048.3:c.587C>T	p.Ser196Leu	p.S196L	ENST00000389048	NM_004304.4	196	tCg/tTg																																																																															
ALK	238	MSKCC	GRCh37	2	30143212	30143212	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772569032		P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	156	647	1	ENST00000389048.3:c.314C>T	p.Ala105Val	p.A105V	ENST00000389048	NM_004304.4	105	gCg/gTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524960	187524960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	176	910	1	ENST00000441802.2:c.10720G>A	p.Val3574Met	p.V3574M	ENST00000441802	NM_005245.3	3574	Gtg/Atg																																																																															
TERT	7015	MSKCC	GRCh37	5	1294565	1294565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	185	721	0	ENST00000310581.5:c.436G>A	p.Asp146Asn	p.D146N	ENST00000310581	NM_198253.2	146	Gac/Aac																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751213	57751213	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	129	587	0	ENST00000274289.3:c.1654C>T	p.Gln552Ter	p.Q552*	ENST00000274289	NM_006622.3	552	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112173849	112173849	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	94	568	0	ENST00000257430.4:c.2558A>G	p.Glu853Gly	p.E853G	ENST00000257430	NM_000038.5	853	gAg/gGg																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839708	27839708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	140	745	4	ENST00000328488.2:c.386G>A	p.Arg129His	p.R129H	ENST00000328488	NM_003533.2	129	cGc/cAc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93969165	93969165	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	137	680	2	ENST00000369303.4:c.1831C>A	p.Pro611Thr	p.P611T	ENST00000369303	NM_004440.3	611	Cct/Act																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459537	50459537	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	136	568	0	ENST00000331340.3:c.826A>G	p.Ser276Gly	p.S276G	ENST00000331340	NM_006060.4	276	Agc/Ggc																																																																															
SMO	6608	MSKCC	GRCh37	7	128829122	128829122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	24	44	0	ENST00000249373.3:c.130G>A	p.Ala44Thr	p.A44T	ENST00000249373	NM_005631.4	44	Gcg/Acg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371725	55371725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	206	750	4	ENST00000297316.4:c.415C>T	p.Pro139Ser	p.P139S	ENST00000297316	NM_022454.3	139	Ccg/Tcg																																																																															
ABL1	25	MSKCC	GRCh37	9	133759607	133759607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	200	1057	0	ENST00000318560.5:c.1930G>A	p.Gly644Arg	p.G644R	ENST00000318560	NM_005157.4	644	Ggg/Agg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411521	63411521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	212	1047	0	ENST00000330258.3:c.1646G>A	p.Arg549Gln	p.R549Q	ENST00000330258	NM_152424.3	549	cGg/cAg																																																																															
BTK	695	MSKCC	GRCh37	X	100608924	100608924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	64	833	1	ENST00000308731.7:c.1684C>T	p.Arg562Trp	p.R562W	ENST00000308731	NM_000061.2	562	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0021177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	50	446	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15278180	15278180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	100	1175	4	ENST00000263388.2:c.5242C>T	p.Arg1748Cys	p.R1748C	ENST00000263388	NM_000435.2	1748	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	170	976	1	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199310	16199310	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0021177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	35	493	0	ENST00000375759.3:c.84-1G>T		p.X28_splice	ENST00000375759	NM_015001.2	28																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27057835	27057835	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	106	1421	0	ENST00000324856.7:c.1543C>G	p.Gln515Glu	p.Q515E	ENST00000324856	NM_006015.4	515	Cag/Gag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65312358	65312358	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	71	850	0	ENST00000342505.4:c.1961A>G	p.Tyr654Cys	p.Y654C	ENST00000342505	NM_002227.2	654	tAt/tGt																																																																															
RET	5979	MSKCC	GRCh37	10	43623572	43623572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	55	574	1	ENST00000355710.3:c.3200C>T	p.Pro1067Leu	p.P1067L	ENST00000355710	NM_020975.4	1067	cCg/cTg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	420233	420233	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0021177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	75	533	0	ENST00000399788.2:c.3037-3C>T		p.X1013_splice	ENST00000399788	NM_001042603.1	1013																																																																																
MDM2	4193	MSKCC	GRCh37	12	69233496	69233496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	59	660	1	ENST00000462284.1:c.1361G>A	p.Gly454Asp	p.G454D	ENST00000462284	NM_002392.5	454	gGt/gAt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16068451	16068451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	14	196	0	ENST00000268712.3:c.460G>A	p.Glu154Lys	p.E154K	ENST00000268712	NM_006311.3	154	Gaa/Aaa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748601	40748601	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200545231		P-0021177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	39	661	1	ENST00000373198.4:c.2915G>A	p.Arg972Gln	p.R972Q	ENST00000373198	NM_133170.3	972	cGa/cAa																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186501409	186501409	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	100	511	0	ENST00000323963.5:c.10G>T	p.Gly4Cys	p.G4C	ENST00000323963		4	Ggc/Tgc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323216	31323216	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	73	1014	1	ENST00000412585.2:c.773G>C	p.Arg258Thr	p.R258T	ENST00000412585	NM_005514.6	258	aGa/aCa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992752	68992752	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	97	1179	1	ENST00000288368.4:c.1717A>G	p.Asn573Asp	p.N573D	ENST00000288368	NM_024870.2	573	Aat/Gat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971152	21971164	+	frameshift_variant	Frame_Shift_Del	DEL	TCCGCGCCGTGGA	TCCGCGCCGTGGA	CG			P-0021177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	65	670	2	ENST00000304494.5:c.194_206delinsCG	p.Leu65ProfsTer51	p.L65Pfs*51	ENST00000304494	NM_000077.4	65	cTCCACGGCGCGGAg/cCGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	461	898	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	107	661	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	168	908	0	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971039	21971040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	142	707	0	ENST00000304494.5:c.318dup	p.Arg107AlafsTer13	p.R107Afs*13	ENST00000304494	NM_000077.4	106	-/G																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44820588	44820589	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	61	501	0	ENST00000377967.4:c.289dup	p.Cys97LeufsTer29	p.C97Lfs*29	ENST00000377967	NM_021140.2	95	-/T																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0021736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	226	761	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295168	1295168	+	upstream_gene_variant	5'Flank	SNP	C	C	G			P-0021736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	100	290	0				ENST00000310581	NM_198253.2																																																																																	
RBM10	8241	MSKCC	GRCh37	X	47039815	47039815	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0021736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	155	415	0	ENST00000329236.7:c.927-3C>G		p.X309_splice	ENST00000329236	NM_001204466.1	309																																																																																
NUF2	83540	MSKCC	GRCh37	1	163318820	163318821	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0021736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	76	641	4	ENST00000271452.3:c.1210_1211delinsTT	p.Gly404Leu	p.G404L	ENST00000271452	NM_145697.2	404	GGa/TTa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71945435	71945435	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	114	740	4	ENST00000298229.2:c.2323G>T	p.Glu775Ter	p.E775*	ENST00000298229	NM_001567.3	775	Gag/Tag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295166	1295166	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0021736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	101	296	0				ENST00000310581	NM_198253.2																																																																																	
CDKN2A	1029	MSKCC	GRCh37	9	21971207	21971207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0021736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	202	458	0	ENST00000304494.5:c.151G>T	p.Val51Phe	p.V51F	ENST00000304494	NM_000077.4	51	Gtc/Ttc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040669	47040670	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0021736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	272	468	0	ENST00000329236.7:c.1071_1072del	p.Tyr357Ter	p.Y357*	ENST00000329236	NM_001204466.1	357	tAC/t																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0021849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	97	386	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764146326		P-0021849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	94	826	1	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																															
MET	4233	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0021849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	191	832	0	ENST00000397752.3:c.3028+3A>G		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	95	960	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519922		P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	162	1095	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																															
CIC	23152	MSKCC	GRCh37	19	42788861	42788861	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	110	723	0	ENST00000575354.2:c.5A>G	p.Tyr2Cys	p.Y2C	ENST00000575354	NM_015125.3	2	tAt/tGt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280007	66280007	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	18	332	0	ENST00000273854.3:c.1682C>A	p.Pro561Gln	p.P561Q	ENST00000273854	NM_004439.5	561	cCa/cAa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971024	21971024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	114	611	1	ENST00000304494.5:c.334C>T	p.Arg112Cys	p.R112C	ENST00000304494	NM_000077.4	112	Cgt/Tgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971023	21971023	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	115	624	0	ENST00000304494.5:c.335del	p.Arg112LeufsTer34	p.R112Lfs*34	ENST00000304494	NM_000077.4	112	cGt/ct																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339147	65339147	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	41	723	0	ENST00000342505.4:c.389C>G	p.Ser130Cys	p.S130C	ENST00000342505	NM_002227.2	130	tCt/tGt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233243	46233243	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	24	666	1	ENST00000334344.6:c.1462C>T	p.Gln488Ter	p.Q488*	ENST00000334344	NM_152641.2	488	Caa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434606	49434610	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	AGGTG	AGGTG	TCA			P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	116	1212	2	ENST00000301067.7:c.6943_6947delinsTGA	p.His2315Ter	p.H2315*	ENST00000301067	NM_003482.3	2315	CACCTg/TGAg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265428	152265428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	142	739	1	ENST00000206249.3:c.881G>T	p.Ser294Ile	p.S294I	ENST00000206249	NM_000125.3	294	aGc/aTc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139820231	139820231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	69	1008	1	ENST00000247668.2:c.1384G>T	p.Asp462Tyr	p.D462Y	ENST00000247668	NM_021138.3	462	Gac/Tac																																																																															
ATRX	546	MSKCC	GRCh37	X	76937390	76937390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	93	454	2	ENST00000373344.5:c.3358G>T	p.Asp1120Tyr	p.D1120Y	ENST00000373344	NM_000489.3	1120	Gat/Tat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	43	798	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	100	1095	0	ENST00000269305.4:c.434T>G	p.Leu145Arg	p.L145R	ENST00000269305	NM_001126112.2	145	cTg/cGg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46727002	46727002	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	64	839	1	ENST00000371975.4:c.836G>T	p.Arg279Leu	p.R279L	ENST00000371975	NM_003579.3	279	cGc/cTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862887	9862887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	42	906	2	ENST00000330684.3:c.2416G>A	p.Glu806Lys	p.E806K	ENST00000330684	NM_001134407.1	806	Gag/Aag																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635130	87635130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	47	574	0	ENST00000277120.3:c.2182C>A	p.His728Asn	p.H728N	ENST00000277120		728	Cac/Aac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100949	27100949	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	44	853	0	ENST00000324856.7:c.4231C>T	p.Gln1411Ter	p.Q1411*	ENST00000324856	NM_006015.4	1411	Cag/Tag																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115273016	115273016	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	58	952	0	ENST00000438362.2:c.1357G>T	p.Ala453Ser	p.A453S	ENST00000438362	NM_001242891.1	453	Gct/Tct																																																																															
CCND1	595	MSKCC	GRCh37	11	69465976	69465976	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	108	934	2	ENST00000227507.2:c.814G>T	p.Glu272Ter	p.E272*	ENST00000227507	NM_053056.2	272	Gag/Tag																																																																															
PGR	5241	MSKCC	GRCh37	11	100912760	100912760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	98	903	1	ENST00000325455.5:c.2562G>T	p.Lys854Asn	p.K854N	ENST00000325455	NM_001202474.3	854	aaG/aaT																																																																															
KDM5A	5927	MSKCC	GRCh37	12	442712	442712	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	47	851	0	ENST00000399788.2:c.1594C>A	p.Leu532Ile	p.L532I	ENST00000399788	NM_001042603.1	532	Ctt/Att																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18691155	18691155	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	46	777	0	ENST00000266497.5:c.3266C>G	p.Pro1089Arg	p.P1089R	ENST00000266497		1089	cCa/cGa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112251	115112251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	14	369	0	ENST00000257566.3:c.1489C>A	p.Pro497Thr	p.P497T	ENST00000257566	NM_016569.3	497	Ccc/Acc																																																																															
RB1	5925	MSKCC	GRCh37	13	49054175	49054175	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	47	654	2	ENST00000267163.4:c.2755A>G	p.Ser919Gly	p.S919G	ENST00000267163	NM_000321.2	919	Agc/Ggc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81554344	81554344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	55	860	0	ENST00000298171.2:c.364C>T	p.Leu122Phe	p.L122F	ENST00000298171	NM_000369.2	122	Ctc/Ttc																																																																															
CD79B	974	MSKCC	GRCh37	17	62007554	62007554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	55	1189	1	ENST00000392795.3:c.313C>A	p.Leu105Ile	p.L105I	ENST00000392795	NM_001039933.1	105	Ctc/Atc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39584427	39584427	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	29	631	1	ENST00000262039.4:c.1092G>T	p.Leu364Phe	p.L364F	ENST00000262039	NM_002647.2	364	ttG/ttT																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211199	2211199	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	50	998	1	ENST00000398665.3:c.1453C>T	p.Gln485Ter	p.Q485*	ENST00000398665	NM_032482.2	485	Cag/Tag																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375445	15375445	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	40	904	0	ENST00000263377.2:c.982G>T	p.Val328Leu	p.V328L	ENST00000263377	NM_058243.2	328	Gtg/Ttg																																																																															
ALK	238	MSKCC	GRCh37	2	30143106	30143106	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	84	1014	0	ENST00000389048.3:c.420G>T	p.Gln140His	p.Q140H	ENST00000389048	NM_004304.4	140	caG/caT																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128050344	128050344	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	83	780	1	ENST00000285398.2:c.313G>T	p.Glu105Ter	p.E105*	ENST00000285398	NM_000122.1	105	Gag/Tag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198274496	198274496	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	30	741	0	ENST00000335508.6:c.902G>C	p.Arg301Thr	p.R301T	ENST00000335508	NM_012433.2	301	aGa/aCa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248674	212248674	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	49	699	0	ENST00000342788.4:c.3593C>G	p.Ala1198Gly	p.A1198G	ENST00000342788	NM_005235.2	1198	gCc/gGc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162153	47162153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	34	735	0	ENST00000409792.3:c.3973G>T	p.Gly1325Ter	p.G1325*	ENST00000409792	NM_014159.6	1325	Gga/Tga																																																																															
KDR	3791	MSKCC	GRCh37	4	55964347	55964347	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	61	859	1	ENST00000263923.4:c.2466T>A	p.Tyr822Ter	p.Y822*	ENST00000263923	NM_002253.2	822	taT/taA																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143029255	143029255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	35	629	0	ENST00000262992.4:c.2365C>A	p.Pro789Thr	p.P789T	ENST00000262992	NM_001101669.1	789	Cct/Act																																																																															
TERT	7015	MSKCC	GRCh37	5	1295338	1295338	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	35	705	0				ENST00000310581	NM_198253.2																																																																																	
APC	324	MSKCC	GRCh37	5	112177665	112177665	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	29	583	0	ENST00000257430.4:c.6374C>G	p.Ser2125Cys	p.S2125C	ENST00000257430	NM_000038.5	2125	tCt/tGt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188318	32188318	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	101	1055	1	ENST00000375023.3:c.1023C>A	p.Cys341Ter	p.C341*	ENST00000375023	NM_004557.3	341	tgC/tgA																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527739	157527739	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	40	719	0	ENST00000346085.5:c.5464G>T	p.Gly1822Cys	p.G1822C	ENST00000346085	NM_020732.3	1822	Ggc/Tgc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962767	2962767	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	42	777	0	ENST00000396946.4:c.2141T>A	p.Leu714Gln	p.L714Q	ENST00000396946	NM_032415.4	714	cTg/cAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8524971	8524971	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	29	687	0	ENST00000356435.5:c.633C>A	p.Asn211Lys	p.N211K	ENST00000356435		211	aaC/aaA																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209467	98209467	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	39	902	0	ENST00000331920.6:c.4071G>T	p.Met1357Ile	p.M1357I	ENST00000331920	NM_000264.3	1357	atG/atT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63409902	63409902	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	47	351	0	ENST00000330258.3:c.3265A>T	p.Arg1089Trp	p.R1089W	ENST00000330258	NM_152424.3	1089	Agg/Tgg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412027	63412027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	33	548	0	ENST00000330258.3:c.1140G>T	p.Glu380Asp	p.E380D	ENST00000330258	NM_152424.3	380	gaG/gaT																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0022891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	101	866	0				ENST00000310581	NM_198253.2																																																																																	
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	73	628	0	ENST00000304494.5:c.172del	p.Arg58GlufsTer88	p.R58Efs*88	ENST00000304494	NM_000077.4	58	Cga/ga																																																																															
BRAF	673	MSKCC	GRCh37	7	140477837	140477851	+	inframe_deletion	In_Frame_Del	DEL	TAGGTGCTGTCACAT	TAGGTGCTGTCACAT	-			P-0022891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	125	910	0	ENST00000288602.6:c.1457_1471del	p.Asn486_Pro490del	p.N486_P490del	ENST00000288602	NM_004333.4	486	aATGTGACAGCACCTAca/aca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	49	661	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	34	488	0				ENST00000310581	NM_198253.2																																																																																	
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs199469669		P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	65	337	0	ENST00000374080.3:c.130G>T	p.Gly44Cys	p.G44C	ENST00000374080		44	Ggt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247247	153247247	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	37	532	0	ENST00000281708.4:c.1555T>C	p.Tyr519His	p.Y519H	ENST00000281708	NM_033632.3	519	Tat/Cat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420607	49420607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	48	658	2	ENST00000301067.7:c.15142C>T	p.Arg5048Cys	p.R5048C	ENST00000301067	NM_003482.3	5048	Cgt/Tgt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270111	66270111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	52	434	0	ENST00000273854.3:c.1771G>A	p.Gly591Ser	p.G591S	ENST00000273854	NM_004439.5	591	Ggc/Agc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023724	27023734	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCCCCTCC	GCGGCCCCTCC	-			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	51	612	0	ENST00000324856.7:c.836_846del	p.Pro279ArgfsTer117	p.P279Rfs*117	ENST00000324856	NM_006015.4	277	gGCGGCCCCTCC/g																																																																															
CCND2	894	MSKCC	GRCh37	12	4385319	4385319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	53	442	0	ENST00000261254.3:c.344C>T	p.Thr115Ile	p.T115I	ENST00000261254	NM_001759.3	115	aCc/aTc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900636	3900636	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	64	634	1	ENST00000262367.5:c.460C>T	p.Gln154Ter	p.Q154*	ENST00000262367	NM_004380.2	154	Caa/Taa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831728	72831728	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	59	627	0	ENST00000268489.5:c.4853T>C	p.Val1618Ala	p.V1618A	ENST00000268489	NM_006885.3	1618	gTg/gCg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11094865	11094865	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	64	762	0	ENST00000344626.4:c.38G>T	p.Arg13Leu	p.R13L	ENST00000344626	NM_003072.3	13	cGg/cTg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967002	18967002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	49	510	0	ENST00000262803.5:c.1717G>A	p.Glu573Lys	p.E573K	ENST00000262803	NM_002911.3	573	Gag/Aag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098956	178098956	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	38	402	0	ENST00000397062.3:c.89T>C	p.Leu30Pro	p.L30P	ENST00000397062	NM_006164.4	30	cTt/cCt																																																																															
EP300	2033	MSKCC	GRCh37	22	41513283	41513283	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	51	569	0	ENST00000263253.7:c.187C>T	p.Gln63Ter	p.Q63*	ENST00000263253	NM_001429.3	63	Cag/Tag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295375	1295375	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	36	303	4				ENST00000310581	NM_198253.2																																																																																	
HIST1H3D	8351	MSKCC	GRCh37	6	26197336	26197336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	51	598	0	ENST00000356476.2:c.143C>T	p.Ala48Val	p.A48V	ENST00000356476		48	gCt/gTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	116	447	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	120	456	5	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	139	460	2	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	179	611	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	133	458	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	141	404	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	298	515	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	214	395	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	41	636	2	ENST00000326873.7:c.842dup	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggCc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968322	2968323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	164	604	2	ENST00000396946.4:c.1663dupC	p.Arg555ProfsTer38	p.R555Pfs*38	ENST00000396946	NM_032415.4	555	cgg/cCgg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3832688	3832688	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	83	350	0	ENST00000262367.5:c.1570delC	p.Leu524TrpfsTer6	p.L524Wfs*6	ENST00000262367	NM_004380.2	524	Ctg/tg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925435	114925435	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	190	569	1	ENST00000543371.1:c.1513C>T	p.Arg505Ter	p.R505*	ENST00000543371	NM_001198531.1	505	Cga/Tga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	138	399	10	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291083	10291084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755889652		P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	181	557	2	ENST00000340748.4:c.387dup	p.Lys130GlnfsTer19	p.K130Qfs*19	ENST00000340748		129	-/C																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	125	372	0	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	127	410	2	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185165687	185165687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	155	390	2	ENST00000265026.3:c.962C>T	p.Ala321Val	p.A321V	ENST00000265026	NM_004721.4	321	gCg/gTg																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	125	434	9	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227982	53227982	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	176	696	0	ENST00000375401.3:c.2332C>T	p.Arg778Ter	p.R778*	ENST00000375401	NM_004187.3	778	Cga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109731	115109731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	203	761	3	ENST00000257566.3:c.2147C>T	p.Ala716Val	p.A716V	ENST00000257566	NM_016569.3	716	gCg/gTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390736	139390736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	51	798	0	ENST00000277541.6:c.7455del	p.Ser2486ArgfsTer103	p.S2486Rfs*103	ENST00000277541	NM_017617.3	2485	ccC/cc																																																																															
MGA	23269	MSKCC	GRCh37	15	41962049	41962049	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	129	450	1	ENST00000219905.7:c.957G>T	p.Lys319Asn	p.K319N	ENST00000219905	NM_001164273.1	319	aaG/aaT																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499363	89499363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	113	357	0	ENST00000336596.2:c.2538delC	p.Met847TrpfsTer10	p.M847Wfs*10	ENST00000336596	NM_005233.5	845	Ccc/cc																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383944	84383944	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	164	488	0	ENST00000321945.7:c.908del	p.Asn303IlefsTer17	p.N303Ifs*17	ENST00000321945	NM_139076.2	303	aAt/at																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972585	25972585	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	84	282	0	ENST00000435504.4:c.1840C>T	p.Arg614Ter	p.R614*	ENST00000435504		614	Cga/Tga																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50492581	50492581	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	136	569	0	ENST00000394963.4:c.1477C>T	p.Arg493Ter	p.R493*	ENST00000394963	NM_003076.4	493	Cga/Tga																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564074	139564074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	137	625	0	ENST00000308874.7:c.214G>A	p.Ala72Thr	p.A72T	ENST00000308874		72	Gcc/Acc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	157	570	6	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	242	668	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	174	579	0	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
XIAP	331	MSKCC	GRCh37	X	123041018	123041018	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs61752968		P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	24	166	0	ENST00000355640.3:c.1481T>A	p.Ile494Asn	p.I494N	ENST00000355640		494	aTt/aAt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15378304	15378305	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	160	447	0	ENST00000263377.2:c.481dup	p.Ile161AsnfsTer3	p.I161Nfs*3	ENST00000263377	NM_058243.2	161	ata/aAta																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	165	579	5	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967091	18967092	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs1384543747		P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	157	553	0	ENST00000262803.5:c.1814_1815del	p.Glu605AlafsTer17	p.E605Afs*17	ENST00000262803	NM_002911.3	602	gcAGag/gcag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046312	69046312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	84	341	0	ENST00000288368.4:c.3785G>A	p.Arg1262His	p.R1262H	ENST00000288368	NM_024870.2	1262	cGt/cAt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67590421	67590421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	61	179	0	ENST00000274335.5:c.1483G>A	p.Glu495Lys	p.E495K	ENST00000274335		495	Gaa/Aaa																																																																															
MET	4233	MSKCC	GRCh37	7	116412563	116412563	+	intron_variant	Intron	DEL	A	A	-			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	133	811	1	ENST00000397752.3:c.3028+526delA		p.*1010*	ENST00000397752	NM_000245.2																																																																																	
ASXL1	171023	MSKCC	GRCh37	20	31021277	31021277	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	264	400	2	ENST00000375687.4:c.1281del	p.Lys427AsnfsTer35	p.K427Nfs*35	ENST00000375687	NM_015338.5	426	Aaa/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420204	49420204	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	202	672	1	ENST00000301067.7:c.15545del	p.Gly5182AlafsTer61	p.G5182Afs*61	ENST00000301067	NM_003482.3	5182	gGc/gc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16245932	16245932	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760738868		P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	115	313	0	ENST00000375759.3:c.1555G>A	p.Val519Met	p.V519M	ENST00000375759	NM_015001.2	519	Gtg/Atg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815761	32815761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	185	692	0	ENST00000354258.4:c.1855G>A	p.Gly619Arg	p.G619R	ENST00000354258	NM_000593.5	619	Ggg/Agg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195544	102195544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	158	487	1	ENST00000263464.3:c.304G>A	p.Val102Ile	p.V102I	ENST00000263464	NM_001165.4	102	Gtt/Att																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259384	16259384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	60	304	0	ENST00000375759.3:c.6649G>A	p.Ala2217Thr	p.A2217T	ENST00000375759	NM_015001.2	2217	Gcg/Acg																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363329	40363329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	185	622	3	ENST00000397332.2:c.900del	p.Lys301AsnfsTer10	p.K301Nfs*10	ENST00000397332	NM_001033082.2	300	ccC/cc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46740297	46740297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	150	435	2	ENST00000371975.4:c.1777C>T	p.Pro593Ser	p.P593S	ENST00000371975	NM_003579.3	593	Cct/Tct																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458824	120458824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	161	547	0	ENST00000256646.2:c.6521G>A	p.Gly2174Glu	p.G2174E	ENST00000256646	NM_024408.3	2174	gGg/gAg																																																																															
WT1	7490	MSKCC	GRCh37	11	32449514	32449514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	175	645	2	ENST00000332351.3:c.860C>T	p.Thr287Met	p.T287M	ENST00000332351	NM_024426.4	287	aCg/aTg																																																																															
WT1	7490	MSKCC	GRCh37	11	32456784	32456785	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	100	556	0	ENST00000332351.3:c.107dup	p.Gly38ArgfsTer14	p.G38Rfs*14	ENST00000332351	NM_024426.4	36	ccg/ccCg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572206	64572206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	104	409	0	ENST00000337652.1:c.1448G>A	p.Gly483Asp	p.G483D	ENST00000337652	NM_130803.2	483	gGc/gAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936058	71936058	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	15	31	0	ENST00000298229.2:c.35del	p.Gly12AlafsTer15	p.G12Afs*15	ENST00000298229	NM_001567.3	10	ccG/cc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022360	12022360	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	229	765	0	ENST00000396373.4:c.466A>G	p.Asn156Asp	p.N156D	ENST00000396373	NM_001987.4	156	Aac/Gac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416483	49416483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	116	481	0	ENST00000301067.7:c.16228G>T	p.Gly5410Trp	p.G5410W	ENST00000301067	NM_003482.3	5410	Ggg/Tgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914812	32914812	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	125	388	0	ENST00000380152.3:c.6320C>A	p.Pro2107His	p.P2107H	ENST00000380152		2107	cCt/cAt																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38591575	38591575	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	86	288	0	ENST00000299084.4:c.34A>G	p.Asn12Asp	p.N12D	ENST00000299084	NM_152594.2	12	Aat/Gat																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99482515	99482515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	104	596	0	ENST00000268035.6:c.3383C>T	p.Ala1128Val	p.A1128V	ENST00000268035	NM_000875.3	1128	gCc/gTc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216587	7216587	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	118	404	0	ENST00000380728.2:c.748C>A	p.Leu250Met	p.L250M	ENST00000380728		250	Ctg/Atg																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33430274	33430274	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	99	600	0	ENST00000335858.7:c.401T>C	p.Val134Ala	p.V134A	ENST00000335858	NM_133629.2	134	gTg/gCg																																																																															
RARA	5914	MSKCC	GRCh37	17	38508194	38508194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	108	380	0	ENST00000254066.5:c.502G>A	p.Glu168Lys	p.E168K	ENST00000254066	NM_000964.3	168	Gag/Aag																																																																															
CD79B	974	MSKCC	GRCh37	17	62007242	62007242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	176	565	0	ENST00000392795.3:c.440G>A	p.Ser147Asn	p.S147N	ENST00000392795	NM_001039933.1	147	aGc/aAc																																																																															
STK11	6794	MSKCC	GRCh37	19	1223104	1223109	+	inframe_deletion	In_Frame_Del	DEL	GGACGA	GGACGA	-			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	170	552	0	ENST00000326873.7:c.1051_1056del	p.Glu351_Asp352del	p.E351_D352del	ENST00000326873	NM_000455.4	347	gcGGACGAg/gcg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5225821	5225821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	182	671	3	ENST00000357368.4:c.2411C>T	p.Ala804Val	p.A804V	ENST00000357368	NM_002850.3	804	gCg/gTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15300121	15300122	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	167	656	0	ENST00000263388.2:c.1154dup	p.Gly386TrpfsTer4	p.G386Wfs*4	ENST00000263388	NM_000435.2	385	ggt/ggGt																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082406	16082406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	195	728	0	ENST00000281043.3:c.220C>A	p.Pro74Thr	p.P74T	ENST00000281043	NM_005378.4	74	Ccc/Acc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605146	46605146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	66	470	0	ENST00000263734.3:c.1363C>T	p.Pro455Ser	p.P455S	ENST00000263734	NM_001430.4	455	Cct/Tct																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485422	57485422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	80	261	0	ENST00000371085.3:c.1004C>T	p.Thr335Ile	p.T335I	ENST00000371085	NM_000516.4	335	aCc/aTc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62319391	62319391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	398	735	0	ENST00000508582.2:c.1655C>T	p.Ala552Val	p.A552V	ENST00000508582		552	gCg/gTg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29083898	29083899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	21	214	0	ENST00000328354.6:c.1617_1618dup	p.Ala540ValfsTer27	p.A540Vfs*27	ENST00000328354	NM_007194.3	540	gct/gTGct																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665375	138665375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	291	744	0	ENST00000330315.3:c.190G>A	p.Ala64Thr	p.A64T	ENST00000330315	NM_023067.3	64	Gcc/Acc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169977822	169977822	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	206	466	0	ENST00000295797.4:c.289A>G	p.Lys97Glu	p.K97E	ENST00000295797	NM_002740.5	97	Aag/Gag																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186506921	186506922	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	65	207	0	ENST00000323963.5:c.1089_1090del	p.Gly365SerfsTer14	p.G365Sfs*14	ENST00000323963		363	AGa/a																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007353	143007353	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	101	328	0	ENST00000262992.4:c.2431C>T	p.Gln811Ter	p.Q811*	ENST00000262992	NM_001101669.1	811	Caa/Taa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38947466	38947466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	87	302	0	ENST00000357387.3:c.4214G>A	p.Arg1405Gln	p.R1405Q	ENST00000357387	NM_152756.3	1405	cGa/cAa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056323	26056323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	130	340	0	ENST00000343677.2:c.334G>A	p.Ala112Thr	p.A112T	ENST00000343677	NM_005319.3	112	Gcc/Acc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911170	29911170	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	64	259	0	ENST00000376809.5:c.469T>C	p.Trp157Arg	p.W157R	ENST00000376809	NM_002116.7	157	Tgg/Cgg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324596	31324596	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	172	375	0	ENST00000412585.2:c.212C>A	p.Pro71Gln	p.P71Q	ENST00000412585	NM_005514.6	71	cCg/cAg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117724371	117724371	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	147	594	0	ENST00000368508.3:c.508T>C	p.Trp170Arg	p.W170R	ENST00000368508	NM_002944.2	170	Tgg/Cgg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196024	138196024	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	21	204	0	ENST00000237289.4:c.338G>T	p.Trp113Leu	p.W113L	ENST00000237289	NM_001270507.1	113	tGg/tTg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138197235	138197235	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	32	378	0	ENST00000237289.4:c.737A>G	p.Tyr246Cys	p.Y246C	ENST00000237289	NM_001270507.1	246	tAc/tGc																																																																															
PAX5	5079	MSKCC	GRCh37	9	37002701	37002701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	112	554	0	ENST00000358127.4:c.548G>A	p.Gly183Asp	p.G183D	ENST00000358127	NM_001280556.1	183	gGc/gAc																																																																															
ABL1	25	MSKCC	GRCh37	9	133760462	133760462	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	166	526	0	ENST00000318560.5:c.2785G>T	p.Gly929Cys	p.G929C	ENST00000318560	NM_005157.4	929	Ggc/Tgc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139418355	139418356	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	218	786	0	ENST00000277541.6:c.216dup	p.Thr73AspfsTer70	p.T73Dfs*70	ENST00000277541	NM_017617.3	72	-/G																																																																															
BCOR	54880	MSKCC	GRCh37	X	39916505	39916505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	234	718	0	ENST00000378444.4:c.4498G>A	p.Ala1500Thr	p.A1500T	ENST00000378444	NM_001123385.1	1500	Gcc/Acc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929125	44929125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	143	402	0	ENST00000377967.4:c.2225C>T	p.Ala742Val	p.A742V	ENST00000377967	NM_021140.2	742	gCc/gTc																																																																															
ARAF	369	MSKCC	GRCh37	X	47422383	47422384	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	98	379	0	ENST00000377045.4:c.23dup	p.Ala9CysfsTer84	p.A9Cfs*84	ENST00000377045	NM_001654.4	6	ggc/ggCc																																																																															
ARAF	369	MSKCC	GRCh37	X	47424466	47424466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	122	557	0	ENST00000377045.4:c.386G>A	p.Gly129Asp	p.G129D	ENST00000377045	NM_001654.4	129	gGc/gAc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223584	53223584	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	102	416	0	ENST00000375401.3:c.3775C>A	p.Leu1259Met	p.L1259M	ENST00000375401	NM_004187.3	1259	Ctg/Atg																																																																															
BTK	695	MSKCC	GRCh37	X	100615574	100615574	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	176	442	0	ENST00000308731.7:c.758G>T	p.Arg253Ile	p.R253I	ENST00000308731	NM_000061.2	253	aGa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	157	548	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015133	37015133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	65	565	1	ENST00000358127.4:c.271G>A	p.Ala91Thr	p.A91T	ENST00000358127	NM_001280556.1	91	Gcc/Acc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135778096	135778096	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	43	447	1	ENST00000298552.3:c.2287C>T	p.Gln763Ter	p.Q763*	ENST00000298552	NM_001162426.1	763	Cag/Tag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651292	52651292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	31	427	0	ENST00000394830.3:c.1804G>A	p.Glu602Lys	p.E602K	ENST00000394830	NM_018313.4	602	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140439656	140439656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	39	328	0	ENST00000288602.6:c.2083G>C	p.Glu695Gln	p.E695Q	ENST00000288602	NM_004333.4	695	Gag/Cag																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905343	50905343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	80	550	0	ENST00000440232.2:c.551G>T	p.Gly184Val	p.G184V	ENST00000440232	NM_002691.3	184	gGg/gTg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67655372	67655372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	52	533	1	ENST00000264010.4:c.1235G>T	p.Cys412Phe	p.C412F	ENST00000264010	NM_006565.3	412	tGt/tTt																																																																															
HGF	3082	MSKCC	GRCh37	7	81372783	81372783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	108	348	0	ENST00000222390.5:c.751C>A	p.Pro251Thr	p.P251T	ENST00000222390	NM_000601.4	251	Ccc/Acc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748159	72748159	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	72	288	0	ENST00000357731.5:c.19G>T	p.Val7Leu	p.V7L	ENST00000357731	NM_173808.2	7	Gtg/Ttg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120509013	120509013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	129	572	0	ENST00000256646.2:c.1553G>A	p.Cys518Tyr	p.C518Y	ENST00000256646	NM_024408.3	518	tGc/tAc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746083	162746083	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	118	364	0	ENST00000367921.3:c.2206T>C	p.Tyr736His	p.Y736H	ENST00000367921	NM_006182.2	736	Tac/Cac																																																																															
NUF2	83540	MSKCC	GRCh37	1	163325201	163325201	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	140	589	0	ENST00000271452.3:c.1337C>G	p.Ala446Gly	p.A446G	ENST00000271452	NM_145697.2	446	gCt/gGt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850714	63850714	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	33	464	0	ENST00000279873.7:c.1492G>C	p.Glu498Gln	p.E498Q	ENST00000279873	NM_032199.2	498	Gaa/Caa																																																																															
TET1	80312	MSKCC	GRCh37	10	70333992	70333992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	86	439	0	ENST00000373644.4:c.1897G>T	p.Val633Phe	p.V633F	ENST00000373644	NM_030625.2	633	Gtt/Ttt																																																																															
TET1	80312	MSKCC	GRCh37	10	70450798	70450798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	82	401	0	ENST00000373644.4:c.5638C>T	p.His1880Tyr	p.H1880Y	ENST00000373644	NM_030625.2	1880	Cac/Tac																																																																															
ATM	472	MSKCC	GRCh37	11	108098401	108098401	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	149	519	0	ENST00000278616.4:c.50A>G	p.His17Arg	p.H17R	ENST00000278616	NM_000051.3	17	cAt/cGt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435113	18435113	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	171	505	0	ENST00000266497.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000266497		33	tCt/tGt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423519	88423519	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	182	616	0	ENST00000360948.2:c.2316C>A	p.Phe772Leu	p.F772L	ENST00000360948	NM_001012338.2	772	ttC/ttA																																																																															
BLM	641	MSKCC	GRCh37	15	91346930	91346930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	81	495	0	ENST00000355112.3:c.3538G>T	p.Val1180Leu	p.V1180L	ENST00000355112	NM_000057.2	1180	Gta/Tta																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858797	9858797	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	42	152	0	ENST00000330684.3:c.2604C>A	p.Tyr868Ter	p.Y868*	ENST00000330684	NM_001134407.1	868	taC/taA																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274189	10274189	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	101	280	0	ENST00000330684.3:c.80C>A	p.Ala27Glu	p.A27E	ENST00000330684	NM_001134407.1	27	gCg/gAg																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805690	46805690	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	163	509	0	ENST00000290295.7:c.266C>G	p.Ser89Cys	p.S89C	ENST00000290295	NM_006361.5	89	tCc/tGc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440751	56440752	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	126	395	0	ENST00000407977.2:c.466_467delinsTT	p.Gly156Leu	p.G156L	ENST00000407977		156	GGg/TTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575066	48575066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	132	356	0	ENST00000342988.3:c.260G>A	p.Arg87Gln	p.R87Q	ENST00000342988	NM_005359.5	87	cGg/cAg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217909	2217909	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	165	535	0	ENST00000398665.3:c.2683G>T	p.Glu895Ter	p.E895*	ENST00000398665	NM_032482.2	895	Gag/Tag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210583	5210583	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	143	450	0	ENST00000357368.4:c.5384C>G	p.Pro1795Arg	p.P1795R	ENST00000357368	NM_002850.3	1795	cCg/cGg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905893	50905893	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	84	549	0	ENST00000440232.2:c.865G>T	p.Asp289Tyr	p.D289Y	ENST00000440232	NM_002691.3	289	Gac/Tac																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624867	9624868	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	139	507	0	ENST00000353224.5:c.109dup	p.Gln37ProfsTer36	p.Q37Pfs*36	ENST00000353224	NM_177990.2	37	cag/cCag																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30309483	30309483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	155	521	0	ENST00000307677.4:c.539C>T	p.Pro180Leu	p.P180L	ENST00000307677	NM_138578.1	180	cCt/cTt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46268694	46268694	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	88	390	0	ENST00000371998.3:c.2983del	p.Ala995LeufsTer94	p.A995Lfs*94	ENST00000371998		993	atG/at																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161736	47161736	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	86	351	0	ENST00000409792.3:c.4390G>C	p.Ala1464Pro	p.A1464P	ENST00000409792	NM_014159.6	1464	Gcc/Ccc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52692281	52692281	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	161	538	0	ENST00000394830.3:c.579A>G	p.Ile193Met	p.I193M	ENST00000394830	NM_018313.4	193	atA/atG																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960047	134960047	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	78	530	0	ENST00000398015.3:c.2404A>G	p.Thr802Ala	p.T802A	ENST00000398015	NM_004441.4	802	Act/Gct																																																																															
BCL6	604	MSKCC	GRCh37	3	187446334	187446334	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	96	317	0	ENST00000232014.4:c.1356-2A>C		p.X452_splice	ENST00000232014	NM_001130845.1	452																																																																																
PDGFRA	5156	MSKCC	GRCh37	4	55146563	55146563	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	113	465	0	ENST00000257290.5:c.2237T>A	p.Leu746Gln	p.L746Q	ENST00000257290	NM_006206.4	746	cTa/cAa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161352	55161352	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138036141		P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	140	527	0	ENST00000257290.5:c.3183G>C	p.Lys1061Asn	p.K1061N	ENST00000257290	NM_006206.4	1061	aaG/aaC																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286253	66286253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	126	413	0	ENST00000273854.3:c.1433G>T	p.Gly478Val	p.G478V	ENST00000273854	NM_004439.5	478	gGg/gTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541678	187541678	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	95	321	0	ENST00000441802.2:c.6062G>T	p.Arg2021Leu	p.R2021L	ENST00000441802	NM_005245.3	2021	cGc/cTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295388	1295388	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	20	122	1				ENST00000310581	NM_198253.2																																																																																	
DROSHA	29102	MSKCC	GRCh37	5	31468154	31468154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	142	568	0	ENST00000344624.3:c.2258G>T	p.Arg753Leu	p.R753L	ENST00000344624		753	cGt/cTt																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225765	26225765	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	44	453	0	ENST00000360408.1:c.383C>G	p.Ala128Gly	p.A128G	ENST00000360408	NM_003532.2	128	gCc/gGc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32172160	32172160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	60	482	2	ENST00000375023.3:c.2872C>T	p.Pro958Ser	p.P958S	ENST00000375023	NM_004557.3	958	Cca/Tca																																																																															
PIM1	5292	MSKCC	GRCh37	6	37141752	37141752	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	53	529	0	ENST00000373509.5:c.827C>G	p.Ser276Ter	p.S276*	ENST00000373509	NM_002648.3	276	tCa/tGa																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975463	13975463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	93	347	0	ENST00000405192.2:c.424A>T	p.Ser142Cys	p.S142C	ENST00000405192	NM_001163147.1	142	Agc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55266409	55266409	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	107	371	0	ENST00000275493.2:c.2702-1G>C		p.X901_splice	ENST00000275493	NM_005228.3	901																																																																																
HGF	3082	MSKCC	GRCh37	7	81381508	81381508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	99	340	0	ENST00000222390.5:c.553G>T	p.Gly185Trp	p.G185W	ENST00000222390	NM_000601.4	185	Ggg/Tgg																																																																															
HGF	3082	MSKCC	GRCh37	7	81392072	81392072	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	131	470	2	ENST00000222390.5:c.205C>A	p.Gln69Lys	p.Q69K	ENST00000222390	NM_000601.4	69	Caa/Aaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864632	68864632	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	41	111	0	ENST00000288368.4:c.3G>T	p.Met1?	p.M1?	ENST00000288368	NM_024870.2	1	atG/atT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971156	21971156	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	64	307	0	ENST00000304494.5:c.202G>C	p.Ala68Pro	p.A68P	ENST00000304494	NM_000077.4	68	Gcg/Ccg																																																																															
FANCC	2176	MSKCC	GRCh37	9	97933361	97933361	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	55	462	1	ENST00000289081.3:c.521G>T	p.Arg174Leu	p.R174L	ENST00000289081	NM_000136.2	174	cGa/cTa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417552	139417552	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	81	617	0	ENST00000277541.6:c.492C>G	p.Cys164Trp	p.C164W	ENST00000277541	NM_017617.3	164	tgC/tgG																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139820300	139820300	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	37	569	0	ENST00000247668.2:c.1453G>T	p.Val485Leu	p.V485L	ENST00000247668	NM_021138.3	485	Gtg/Ttg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410409	63410409	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	114	318	0	ENST00000330258.3:c.2758G>T	p.Glu920Ter	p.E920*	ENST00000330258	NM_152424.3	920	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	51	427	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	86	576	1	ENST00000269305.4:c.770T>A	p.Leu257Gln	p.L257Q	ENST00000269305	NM_001126112.2	257	cTg/cAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971088	21971088	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	33	313	0	ENST00000304494.5:c.270C>G	p.Phe90Leu	p.F90L	ENST00000304494	NM_000077.4	90	ttC/ttG																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971144	21971144	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	33	314	0	ENST00000304494.5:c.214T>G	p.Cys72Gly	p.C72G	ENST00000304494	NM_000077.4	72	Tgc/Ggc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970969	21970971	+	stop_gained	Nonsense_Mutation	ONP	AGG	AGG	TGT			P-0026172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	84	518	0	ENST00000304494.5:c.387_389delinsACA	p.Tyr129_Leu130delinsTer	p.Y129_L130delins*	ENST00000304494	NM_000077.4	129	taCCTg/taACAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	136	482	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0026910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	86	487	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0026910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	139	585	1	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913389		P-0026910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	49	504	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0028581-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			946	251	805	1	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0028581-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	60	384	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175487	112175487	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028581-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			425	42	376	0	ENST00000257430.4:c.4196del	p.Arg1399LeufsTer16	p.R1399Lfs*16	ENST00000257430	NM_000038.5	1399	cGt/ct																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711330	114711330	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0028581-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			669	37	375	0	ENST00000543371.1:c.345C>G	p.Tyr115Ter	p.Y115*	ENST00000543371	NM_001198531.1	115	taC/taG																																																																															
JAK3	3718	MSKCC	GRCh37	19	17941344	17941344	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028581-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1184	124	740	1	ENST00000458235.1:c.3064A>G	p.Thr1022Ala	p.T1022A	ENST00000458235	NM_000215.3	1022	Acc/Gcc																																																																															
CD79A	973	MSKCC	GRCh37	19	42381382	42381382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028581-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			961	89	611	0	ENST00000221972.3:c.8G>A	p.Gly3Glu	p.G3E	ENST00000221972	NM_021601.3	3	gGg/gAg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463509	25463509	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028581-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			733	109	601	1	ENST00000264709.3:c.2173G>A	p.Glu725Lys	p.E725K	ENST00000264709	NM_175629.2	725	Gag/Aag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212587222	212587222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028581-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			568	33	558	0	ENST00000342788.4:c.779C>G	p.Thr260Ser	p.T260S	ENST00000342788	NM_005235.2	260	aCt/aGt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962846	2962846	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	110	611	0	ENST00000396946.4:c.2062C>T	p.Arg688Ter	p.R688*	ENST00000396946	NM_032415.4	688	Cga/Tga																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31409382	31409382	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	68	395	0	ENST00000344624.3:c.3725A>G	p.Asn1242Ser	p.N1242S	ENST00000344624		1242	aAt/aGt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041244	47041245	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0029846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	139	322	0	ENST00000329236.7:c.1438_1439del	p.Gln480GlyfsTer18	p.Q480Gfs*18	ENST00000329236	NM_001204466.1	480	CAg/g																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0029846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	71	339	0	ENST00000304494.5:c.151-2A>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
MET	4233	MSKCC	GRCh37	7	116411866	116411893	+	intron_variant	Intron	DEL	CGTCTTTAACAAGCTCTTTCTTTCTCTC	CGTCTTTAACAAGCTCTTTCTTTCTCTC	G			P-0029846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	159	786	0	ENST00000397752.3:c.2888-37_2888-10delinsG		p.*963*	ENST00000397752	NM_000245.2																																																																																	
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0029919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	434	440	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0029919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	924	473	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562133	21562133	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	268	852	0	ENST00000382592.4:c.1786A>T	p.Ser596Cys	p.S596C	ENST00000382592	NM_014572.2	596	Agc/Tgc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169977787	169977787	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1309	193	529	0	ENST00000295797.4:c.254A>T	p.Glu85Val	p.E85V	ENST00000295797	NM_002740.5	85	gAg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112164593	112164596	+	frameshift_variant	Frame_Shift_Del	DEL	ATGT	ATGT	-			P-0029919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	214	268	0	ENST00000257430.4:c.1668_1671del	p.Asp556GlufsTer13	p.D556Efs*13	ENST00000257430	NM_000038.5	556	gATGTa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	151	537	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552822		P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	120	436	1	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78899272	78899272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	126	452	0	ENST00000306801.3:c.2911G>A	p.Val971Ile	p.V971I	ENST00000306801	NM_020761.2	971	Gtc/Atc																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349280	11349280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	105	353	0	ENST00000332029.2:c.56C>T	p.Pro19Leu	p.P19L	ENST00000332029	NM_003745.1	19	cCc/cTc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729696	162729696	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	132	484	0	ENST00000367921.3:c.782A>G	p.Asn261Ser	p.N261S	ENST00000367921	NM_006182.2	261	aAc/aGc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741450	17741450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	363	614	0	ENST00000250003.3:c.121C>A	p.Arg41Ser	p.R41S	ENST00000250003	NM_002478.4	41	Cgc/Agc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427998	49427998	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	153	544	0	ENST00000301067.7:c.10592A>C	p.Gln3531Pro	p.Q3531P	ENST00000301067	NM_003482.3	3531	cAg/cCg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95563052	95563052	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	40	191	0	ENST00000343455.3:c.4207-2A>T		p.X1403_splice	ENST00000343455	NM_177438.2	1403																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11138559	11138559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	43	587	0	ENST00000344626.4:c.3315G>A	p.Met1105Ile	p.M1105I	ENST00000344626	NM_003072.3	1105	atG/atA																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271980	15271981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	142	689	1	ENST00000263388.2:c.6458dup	p.Gly2154TrpfsTer88	p.G2154Wfs*88	ENST00000263388	NM_000435.2	2153	cct/ccCt																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794462	242794462	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	187	699	1	ENST00000334409.5:c.480del	p.Arg161GlyfsTer24	p.R161Gfs*24	ENST00000334409	NM_005018.2	160	ccC/cc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46276030	46276030	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	137	577	0	ENST00000371998.3:c.3466C>T	p.Arg1156Ter	p.R1156*	ENST00000371998		1156	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670403	134670403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	96	418	0	ENST00000398015.3:c.314C>T	p.Ser105Phe	p.S105F	ENST00000398015	NM_004441.4	105	tCc/tTc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873595	35873596	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	101	225	0	ENST00000303115.3:c.551_552delinsAA	p.Ser184Ter	p.S184*	ENST00000303115	NM_002185.3	184	tCC/tAA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0030012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	42	329	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0030012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	136	590	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023477	27023478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACGCGGGGCCCCAGCAGAA			P-0030012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	27	511	0	ENST00000324856.7:c.584_602dup	p.Asn201LysfsTer205	p.N201Kfs*205	ENST00000324856	NM_006015.4	195	tac/tACGCGGGGCCCCAGCAGAAac																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660744	227660744	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs144228243		P-0030012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	59	646	0	ENST00000305123.5:c.2711A>G	p.Asp904Gly	p.D904G	ENST00000305123	NM_005544.2	904	gAt/gGt																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971186	13971186	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	41	299	0	ENST00000405192.2:c.743A>G	p.Gln248Arg	p.Q248R	ENST00000405192	NM_001163147.1	248	cAa/cGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	352	402	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040650	47040650	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	275	607	1	ENST00000329236.7:c.1051G>T	p.Glu351Ter	p.E351*	ENST00000329236	NM_001204466.1	351	Gag/Tag																																																																															
MITF	4286	MSKCC	GRCh37	3	70008548	70008548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	169	339	1	ENST00000352241.4:c.1138C>T	p.Arg380Trp	p.R380W	ENST00000352241	NM_198159.2	380	Cgg/Tgg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39937125	39937125	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	48	604	0	ENST00000378444.4:c.58G>T	p.Val20Phe	p.V20F	ENST00000378444	NM_001123385.1	20	Gtc/Ttc																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17384726	17384726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368554117		P-0030090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	264	646	0	ENST00000359435.4:c.358G>A	p.Ala120Thr	p.A120T	ENST00000359435	NM_001033549.1	120	Gcc/Acc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11288961	11288961	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	188	397	0	ENST00000361445.4:c.2794A>G	p.Ser932Gly	p.S932G	ENST00000361445	NM_004958.3	932	Agt/Ggt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563201	21563201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	267	679	0	ENST00000382592.4:c.718G>A	p.Glu240Lys	p.E240K	ENST00000382592	NM_014572.2	240	Gag/Aag																																																																															
ALK	238	MSKCC	GRCh37	2	29451888	29451889	+	missense_variant	Missense_Mutation	DNP	CG	CG	TC			P-0030090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	256	643	1	ENST00000389048.3:c.2676_2677delinsGA	p.Gly893Arg	p.G893R	ENST00000389048	NM_004304.4	892	gcCGga/gcGAga																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719487	190719487	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	103	197	0	ENST00000441310.2:c.1489G>T	p.Glu497Ter	p.E497*	ENST00000441310	NM_000534.4	497	Gag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81346604	81346604	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	119	287	0	ENST00000222390.5:c.1349C>A	p.Pro450His	p.P450H	ENST00000222390	NM_000601.4	450	cCc/cAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76920200	76920200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	133	273	0	ENST00000373344.5:c.3877G>T	p.Asp1293Tyr	p.D1293Y	ENST00000373344	NM_000489.3	1293	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	347	369	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	362	519	0	ENST00000269305.4:c.542G>C	p.Arg181Pro	p.R181P	ENST00000269305	NM_001126112.2	181	cGc/cCc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53231036	53231036	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	139	461	0	ENST00000375401.3:c.1866G>T	p.Trp622Cys	p.W622C	ENST00000375401	NM_004187.3	622	tgG/tgT																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625303	69625303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	175	599	0	ENST00000334134.2:c.490C>T	p.Arg164Cys	p.R164C	ENST00000334134	NM_005247.2	164	Cgc/Tgc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729697	41729697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	192	447	1	ENST00000242208.4:c.832G>T	p.Gly278Trp	p.G278W	ENST00000242208	NM_002192.2	278	Ggg/Tgg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332760	70332760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	64	492	1	ENST00000373644.4:c.665G>A	p.Arg222His	p.R222H	ENST00000373644	NM_030625.2	222	cGc/cAc																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205113	61205113	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	74	444	0	ENST00000301761.2:c.53G>C	p.Arg18Thr	p.R18T	ENST00000301761	NM_017841.2	18	aGg/aCg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46211512	46211512	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	99	245	0	ENST00000334344.6:c.478A>T	p.Lys160Ter	p.K160*	ENST00000334344	NM_152641.2	160	Aaa/Taa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608288	28608288	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	64	499	0	ENST00000241453.7:c.1768T>C	p.Phe590Leu	p.F590L	ENST00000241453	NM_004119.2	590	Ttc/Ctc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609432	81609432	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	77	437	0	ENST00000298171.2:c.1030C>A	p.Gln344Lys	p.Q344K	ENST00000298171	NM_000369.2	344	Cag/Aag																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609504	81609504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	104	446	0	ENST00000298171.2:c.1102C>A	p.Gln368Lys	p.Q368K	ENST00000298171	NM_000369.2	368	Cag/Aag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032333	10032333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	61	412	0	ENST00000330684.3:c.490G>T	p.Asp164Tyr	p.D164Y	ENST00000330684	NM_001134407.1	164	Gat/Tat																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961830	15961830	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	65	401	0	ENST00000268712.3:c.5965C>G	p.Leu1989Val	p.L1989V	ENST00000268712	NM_006311.3	1989	Ctg/Gtg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302332	15302332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	433	730	0	ENST00000263388.2:c.939G>T	p.Gln313His	p.Q313H	ENST00000263388	NM_000435.2	313	caG/caT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210982	36210982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1902	106	811	0	ENST00000222270.7:c.733G>A	p.Val245Met	p.V245M	ENST00000222270	NM_014727.1	245	Gtg/Atg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085975	16085975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	228	452	1	ENST00000281043.3:c.1151G>A	p.Arg384Lys	p.R384K	ENST00000281043	NM_005378.4	384	aGa/aAa																																																																															
ALK	238	MSKCC	GRCh37	2	29416321	29416321	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	99	622	2	ENST00000389048.3:c.4632C>A	p.Asn1544Lys	p.N1544K	ENST00000389048	NM_004304.4	1544	aaC/aaA																																																																															
BARD1	580	MSKCC	GRCh37	2	215645618	215645618	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	238	505	0	ENST00000260947.4:c.980G>T	p.Arg327Ile	p.R327I	ENST00000260947	NM_000465.2	327	aGa/aTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733358	40733358	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	44	389	0	ENST00000373198.4:c.3448G>C	p.Glu1150Gln	p.E1150Q	ENST00000373198	NM_133170.3	1150	Gag/Cag																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504926	186504926	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	79	262	0	ENST00000323963.5:c.782T>C	p.Leu261Ser	p.L261S	ENST00000323963		261	tTg/tCg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557945	187557945	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	89	317	0	ENST00000441802.2:c.3766G>T	p.Glu1256Ter	p.E1256*	ENST00000441802	NM_005245.3	1256	Gag/Tag																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43748535	43748535	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	49	423	2	ENST00000523873.1:c.489G>T	p.Trp163Cys	p.W163C	ENST00000523873		163	tgG/tgT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117638401	117638401	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	84	363	0	ENST00000368508.3:c.6040G>C	p.Gly2014Arg	p.G2014R	ENST00000368508	NM_002944.2	2014	Gga/Cga																																																																															
SMO	6608	MSKCC	GRCh37	7	128846187	128846187	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	389	532	0	ENST00000249373.3:c.1117G>T	p.Val373Leu	p.V373L	ENST00000249373	NM_005631.4	373	Gtg/Ttg																																																																															
BRAF	673	MSKCC	GRCh37	7	140501281	140501281	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	317	383	0	ENST00000288602.6:c.791G>T	p.Cys264Phe	p.C264F	ENST00000288602	NM_004333.4	264	tGt/tTt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39914688	39914688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	150	527	2	ENST00000378444.4:c.4674G>T	p.Leu1558Phe	p.L1558F	ENST00000378444	NM_001123385.1	1558	ttG/ttT																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53230836	53230836	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	97	617	0	ENST00000375401.3:c.1957G>T	p.Ala653Ser	p.A653S	ENST00000375401	NM_004187.3	653	Gcc/Tcc																																																																															
ATRX	546	MSKCC	GRCh37	X	76954061	76954061	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	147	520	0	ENST00000373344.5:c.189+1G>C		p.X63_splice	ENST00000373344	NM_000489.3	63																																																																																
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0030180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	209	494	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830915	72830918	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0030180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	27	400	0	ENST00000268489.5:c.5663_5666del	p.Glu1888AlafsTer25	p.E1888Afs*25	ENST00000268489	NM_006885.3	1888	gAAAGc/gc																																																																															
APC	324	MSKCC	GRCh37	5	112174269	112174285	+	frameshift_variant	Frame_Shift_Del	DEL	AGTTTTGCAGTTATGGT	AGTTTTGCAGTTATGGT	-			P-0030180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	84	372	0	ENST00000257430.4:c.2978_2994del	p.Lys993ThrfsTer9	p.K993Tfs*9	ENST00000257430	NM_000038.5	993	aAGTTTTGCAGTTATGGT/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0030199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	439	644	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519922		P-0030199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	363	563	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89693008	89693008	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0030199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	144	348	0	ENST00000371953.3:c.492+1del		p.K164fs	ENST00000371953	NM_000314.4	164	aaG/aa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56864537	56864537	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	169	454	0	ENST00000308159.5:c.1025A>G	p.Gln342Arg	p.Q342R	ENST00000308159	NM_014669.4	342	cAg/cGg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635154	87635156	+	frameshift_variant	Frame_Shift_Del	DEL	ATG	ATG	TT			P-0030199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	267	377	1	ENST00000277120.3:c.2206_2208delinsTT	p.Met736PhefsTer43	p.M736Ffs*43	ENST00000277120		736	ATG/TT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411011	63411011	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	126	547	0	ENST00000330258.3:c.2156T>C	p.Met719Thr	p.M719T	ENST00000330258	NM_152424.3	719	aTg/aCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	271	374	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	155	491	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604701	48604701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	142	331	0	ENST00000342988.3:c.1523G>A	p.Gly508Asp	p.G508D	ENST00000342988	NM_005359.5	508	gGc/gAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448321	56448321	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	223	521	0	ENST00000407977.2:c.326T>C	p.Leu109Pro	p.L109P	ENST00000407977		109	cTg/cCg																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402595	20402595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	42	309	0	ENST00000346618.3:c.132C>A	p.Phe44Leu	p.F44L	ENST00000346618	NM_001949.4	44	ttC/ttA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	149	631	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
SMARCB1	6598	MSKCC	GRCh37	22	24145513	24145513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	64	540	0	ENST00000263121.7:c.532G>A	p.Glu178Lys	p.E178K	ENST00000263121	NM_003073.3	178	Gag/Aag																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523718	176523718	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	190	578	0	ENST00000292408.4:c.2129G>T	p.Arg710Leu	p.R710L	ENST00000292408	NM_213647.1	710	cGa/cTa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120459236	120459236	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	58	526	0	ENST00000256646.2:c.6109G>C	p.Asp2037His	p.D2037H	ENST00000256646	NM_024408.3	2037	Gac/Cac																																																																															
BIRC3	330	MSKCC	GRCh37	11	102196262	102196262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	27	326	0	ENST00000263464.3:c.919G>A	p.Asp307Asn	p.D307N	ENST00000263464	NM_001165.4	307	Gat/Aat																																																																															
FLCN	201163	MSKCC	GRCh37	17	17129558	17129558	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	139	692	0	ENST00000285071.4:c.328C>A	p.Gln110Lys	p.Q110K	ENST00000285071	NM_144997.5	110	Cag/Aag																																																																															
TCF3	6929	MSKCC	GRCh37	19	1632081	1632081	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	143	613	1	ENST00000344749.5:c.254A>G	p.His85Arg	p.H85R	ENST00000344749	NM_001136139.2	85	cAc/cGc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096957	11096957	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	138	693	0	ENST00000344626.4:c.448G>T	p.Gly150Ter	p.G150*	ENST00000344626	NM_003072.3	150	Gga/Tga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134236	11134236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	100	557	0	ENST00000344626.4:c.2902C>T	p.Leu968Phe	p.L968F	ENST00000344626	NM_003072.3	968	Ctc/Ttc																																																																															
CENPA	1058	MSKCC	GRCh37	2	27009150	27009150	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	40	174	0	ENST00000335756.4:c.86G>T	p.Arg29Leu	p.R29L	ENST00000335756	NM_001809.3	29	cGg/cTg																																																																															
ALK	238	MSKCC	GRCh37	2	29462642	29462642	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	63	640	0	ENST00000389048.3:c.2259del	p.Ser754ProfsTer36	p.S754Pfs*36	ENST00000389048	NM_004304.4	753	cgG/cg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259286	89259286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	98	494	0	ENST00000336596.2:c.430G>T	p.Asp144Tyr	p.D144Y	ENST00000336596	NM_005233.5	144	Gac/Tac																																																																															
ATR	545	MSKCC	GRCh37	3	142218547	142218547	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	39	403	0	ENST00000350721.4:c.5302G>C	p.Asp1768His	p.D1768H	ENST00000350721	NM_001184.3	1768	Gat/Cat																																																																															
KDR	3791	MSKCC	GRCh37	4	55972039	55972039	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	107	473	0	ENST00000263923.4:c.1605A>T	p.Lys535Asn	p.K535N	ENST00000263923	NM_002253.2	535	aaA/aaT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532783	187532783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	73	572	0	ENST00000441802.2:c.9610C>A	p.Gln3204Lys	p.Q3204K	ENST00000441802	NM_005245.3	3204	Caa/Aaa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005504	150005504	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	41	422	0	ENST00000253339.5:c.721C>G	p.Gln241Glu	p.Q241E	ENST00000253339		241	Caa/Gaa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370781	55370781	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs199550282		P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	48	399	0	ENST00000297316.4:c.83G>T	p.Gly28Val	p.G28V	ENST00000297316	NM_022454.3	28	gGc/gTc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992741	68992741	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	73	671	0	ENST00000288368.4:c.1706T>C	p.Met569Thr	p.M569T	ENST00000288368	NM_024870.2	569	aTg/aCg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964445	70964445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	115	544	1	ENST00000276594.2:c.1583C>T	p.Ser528Phe	p.S528F	ENST00000276594	NM_024504.3	528	tCc/tTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404576	8404576	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	53	348	0	ENST00000356435.5:c.4171G>C	p.Ala1391Pro	p.A1391P	ENST00000356435		1391	Gca/Cca																																																																															
MED12	9968	MSKCC	GRCh37	X	70347814	70347814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	101	537	1	ENST00000374080.3:c.3053C>A	p.Ala1018Glu	p.A1018E	ENST00000374080		1018	gCa/gAa																																																																															
MED12	9968	MSKCC	GRCh37	X	70354961	70354961	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	112	551	0	ENST00000374080.3:c.4883A>T	p.Gln1628Leu	p.Q1628L	ENST00000374080		1628	cAg/cTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207077	1207077	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	TT			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	143	639	0	ENST00000326873.7:c.165delinsTT	p.Gly56TrpfsTer107	p.G56Wfs*107	ENST00000326873	NM_000455.4	55	ctG/ctTT																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0030309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	269	725	0	ENST00000397752.3:c.3028+1G>A		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	78	488	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457653	67457653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	104	607	0	ENST00000327367.4:c.463G>A	p.Asp155Asn	p.D155N	ENST00000327367	NM_005902.3	155	Gac/Aac																																																																															
DICER1	23405	MSKCC	GRCh37	14	95571407	95571407	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0030317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	51	230	0	ENST00000343455.3:c.3269+1G>A		p.X1090_splice	ENST00000343455	NM_177438.2	1090																																																																																
ASXL2	55252	MSKCC	GRCh37	2	25967287	25967287	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	133	495	0	ENST00000435504.4:c.1919C>G	p.Ala640Gly	p.A640G	ENST00000435504		640	gCt/gGt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134644703	134644703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	115	516	0	ENST00000398015.3:c.104C>T	p.Thr35Met	p.T35M	ENST00000398015	NM_004441.4	35	aCg/aTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229536	98229536	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	105	478	0	ENST00000331920.6:c.2422C>T	p.Gln808Ter	p.Q808*	ENST00000331920	NM_000264.3	808	Cag/Tag																																																																															
ARAF	369	MSKCC	GRCh37	X	47426132	47426132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	134	681	0	ENST00000377045.4:c.652G>A	p.Val218Ile	p.V218I	ENST00000377045	NM_001654.4	218	Gtc/Atc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279674	123279674	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	62	331	0	ENST00000358487.5:c.758C>G	p.Pro253Arg	p.P253R	ENST00000358487	NM_000141.4	253	cCt/cGt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942090	71942090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	136	706	0	ENST00000298229.2:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000298229	NM_001567.3	452	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0030326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	107	649	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579722	7579722	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0030326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	93	574	1	ENST00000269305.4:c.75-1G>T		p.X25_splice	ENST00000269305	NM_001126112.2	25																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31019126	31019126	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0030326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	80	442	0	ENST00000375687.4:c.721C>A	p.Gln241Lys	p.Q241K	ENST00000375687	NM_015338.5	241	Caa/Aaa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47061249	47061249	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0030326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	83	409	0	ENST00000409792.3:c.7431+1G>T		p.X2477_splice	ENST00000409792	NM_014159.6	2477																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21974762	21974762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	41	243	0	ENST00000304494.5:c.65G>C	p.Arg22Pro	p.R22P	ENST00000304494	NM_000077.4	22	cGg/cCg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135787783	135787783	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	89	520	0	ENST00000298552.3:c.799del	p.Thr267GlnfsTer51	p.T267Qfs*51	ENST00000298552	NM_001162426.1	267	Aca/ca																																																																															
MED12	9968	MSKCC	GRCh37	X	70356437	70356437	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	93	654	0	ENST00000374080.3:c.5332A>T	p.Ser1778Cys	p.S1778C	ENST00000374080		1778	Agt/Tgt																																																																															
XIAP	331	MSKCC	GRCh37	X	123034349	123034349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	68	380	0	ENST00000355640.3:c.1106C>A	p.Thr369Asn	p.T369N	ENST00000355640		369	aCc/aAc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313368	30313368	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	148	638	0	ENST00000262643.3:c.968A>G	p.Asp323Gly	p.D323G	ENST00000262643	NM_001238.2	323	gAc/gGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	213	382	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	72	405	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	87	436	2	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555057	106555057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	92	371	0	ENST00000369096.4:c.2174G>A	p.Arg725Gln	p.R725Q	ENST00000369096	NM_001198.3	725	cGa/cAa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	222	472	4	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882049	36882050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	200	581	0	ENST00000358127.4:c.963dupC	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	-/C																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	89	490	4	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	99	449	10	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098411	11098411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	116	424	1	ENST00000344626.4:c.929G>A	p.Arg310His	p.R310H	ENST00000344626	NM_003072.3	310	cGc/cAc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066648	94066648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	230	366	0	ENST00000369303.4:c.1111C>T	p.Arg371Trp	p.R371W	ENST00000369303	NM_004440.3	371	Cgg/Tgg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303029	15303029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	118	691	0	ENST00000263388.2:c.421C>T	p.Arg141Cys	p.R141C	ENST00000263388	NM_000435.2	141	Cgc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628340	187628340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	98	460	0	ENST00000441802.2:c.2642G>A	p.Arg881His	p.R881H	ENST00000441802	NM_005245.3	881	cGc/cAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348011	348011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	134	547	0	ENST00000262320.3:c.1495G>A	p.Val499Met	p.V499M	ENST00000262320	NM_003502.3	499	Gtg/Atg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905485	50905485	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs914238978		P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	101	633	0	ENST00000440232.2:c.613G>A	p.Gly205Ser	p.G205S	ENST00000440232	NM_002691.3	205	Ggc/Agc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38184289	38184289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149768452		P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	68	494	0	ENST00000317025.8:c.1667C>T	p.Thr556Met	p.T556M	ENST00000317025	NM_023034.1	556	aCg/aTg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61709534	61709534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	40	294	0	ENST00000401558.2:c.2953G>A	p.Ala985Thr	p.A985T	ENST00000401558	NM_003400.3	985	Gcc/Acc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139794895	139794895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	68	309	0	ENST00000247668.2:c.289C>T	p.Arg97Cys	p.R97C	ENST00000247668	NM_021138.3	97	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433960	49433960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	92	604	0	ENST00000301067.7:c.7593del	p.Ser2532LeufsTer11	p.S2532Lfs*11	ENST00000301067	NM_003482.3	2531	ccC/cc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11182095	11182095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	83	465	0	ENST00000361445.4:c.6751C>T	p.Arg2251Trp	p.R2251W	ENST00000361445	NM_004958.3	2251	Cgg/Tgg																																																																															
SDHB	6390	MSKCC	GRCh37	1	17349218	17349218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	62	309	0	ENST00000375499.3:c.650G>A	p.Arg217His	p.R217H	ENST00000375499	NM_003000.2	217	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023810	27023811	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	85	338	0	ENST00000324856.7:c.920dup	p.Tyr308LeufsTer92	p.Y308Lfs*92	ENST00000324856	NM_006015.4	306	cgg/cGgg																																																																															
PARP1	142	MSKCC	GRCh37	1	226564886	226564886	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	76	366	1	ENST00000366794.5:c.1864delA	p.Thr622ProfsTer31	p.T622Pfs*31	ENST00000366794	NM_001618.3	622	Acc/cc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123324999	123324999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	66	379	0	ENST00000358487.5:c.329G>A	p.Ser110Asn	p.S110N	ENST00000358487	NM_000141.4	110	aGt/aAt																																																																															
PAK1	5058	MSKCC	GRCh37	11	77103409	77103409	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	94	278	0	ENST00000356341.3:c.157C>T	p.Arg53Ter	p.R53*	ENST00000356341	NM_002576.4	53	Cga/Tga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	404932	404932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	79	337	0	ENST00000399788.2:c.4262G>A	p.Arg1421Gln	p.R1421Q	ENST00000399788	NM_001042603.1	1421	cGg/cAg																																																																															
POLE	5426	MSKCC	GRCh37	12	133219879	133219879	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	205	460	0	ENST00000320574.5:c.4482G>T	p.Gln1494His	p.Q1494H	ENST00000320574	NM_006231.2	1494	caG/caT																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562187	21562187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	157	751	0	ENST00000382592.4:c.1732G>A	p.Val578Ile	p.V578I	ENST00000382592	NM_014572.2	578	Gtt/Att																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914152	32914152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	84	410	0	ENST00000380152.3:c.5660C>T	p.Thr1887Met	p.T1887M	ENST00000380152		1887	aCg/aTg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134150	41134150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	63	268	0	ENST00000379561.5:c.1478G>A	p.Gly493Asp	p.G493D	ENST00000379561	NM_002015.3	493	gGc/gAc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046586	30046586	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	81	438	0	ENST00000331968.5:c.2597A>G	p.Asp866Gly	p.D866G	ENST00000331968	NM_002742.2	866	gAc/gGc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121868	2121868	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	86	565	1	ENST00000219476.3:c.2030C>A	p.Pro677His	p.P677H	ENST00000219476	NM_000548.3	677	cCc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777766	3777766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	130	767	0	ENST00000262367.5:c.7282G>A	p.Gly2428Arg	p.G2428R	ENST00000262367	NM_004380.2	2428	Ggg/Agg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274172	10274172	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	71	353	0	ENST00000330684.3:c.97G>C	p.Ala33Pro	p.A33P	ENST00000330684	NM_001134407.1	33	Gcg/Ccg																																																																															
NF1	4763	MSKCC	GRCh37	17	29652996	29652996	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	69	367	0	ENST00000358273.4:c.4998del	p.Pro1667LeufsTer31	p.P1667Lfs*31	ENST00000358273	NM_001042492.2	1665	gTt/gt																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30325891	30325891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	63	345	0	ENST00000322652.5:c.2089G>A	p.Ala697Thr	p.A697T	ENST00000322652	NM_015355.2	697	Gca/Aca																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40441539	40441539	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	112	618	0	ENST00000345506.4:c.110G>A	p.Trp37Ter	p.W37*	ENST00000345506	NM_003152.3	37	tGg/tAg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761145	59761145	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	84	496	0	ENST00000259008.2:c.3262C>G	p.His1088Asp	p.H1088D	ENST00000259008	NM_032043.2	1088	Cat/Gat																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532613	63532613	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	127	582	0	ENST00000307078.5:c.1966C>T	p.Arg656Ter	p.R656*	ENST00000307078	NM_004655.3	656	Cga/Tga																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39637932	39637932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	82	379	0	ENST00000262039.4:c.2349G>T	p.Met783Ile	p.M783I	ENST00000262039	NM_002647.2	783	atG/atT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599915	10599915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	216	503	2	ENST00000171111.5:c.1661G>A	p.Arg554Gln	p.R554Q	ENST00000171111	NM_203500.1	554	cGa/cAa																																																																															
CIC	23152	MSKCC	GRCh37	19	42793508	42793508	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	134	570	0	ENST00000575354.2:c.1310A>G	p.Asp437Gly	p.D437G	ENST00000575354	NM_015125.3	437	gAt/gGt																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46597007	46597007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	114	353	0	ENST00000263734.3:c.821G>A	p.Gly274Asp	p.G274D	ENST00000263734	NM_001430.4	274	gGc/gAc																																																																															
REL	5966	MSKCC	GRCh37	2	61149549	61149549	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	62	357	1	ENST00000295025.8:c.1739C>A	p.Pro580Gln	p.P580Q	ENST00000295025	NM_002908.2	580	cCa/cAa																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719198	190719198	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	87	253	0	ENST00000441310.2:c.1205del	p.Asn402ThrfsTer6	p.N402Tfs*6	ENST00000441310	NM_000534.4	400	ggA/gg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560813	9560813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	84	301	0	ENST00000353224.5:c.969G>T	p.Glu323Asp	p.E323D	ENST00000353224	NM_177990.2	323	gaG/gaT																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31020715	31020715	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	56	273	2	ENST00000375687.4:c.1012C>T	p.Arg338Ter	p.R338*	ENST00000375687	NM_015338.5	338	Cga/Tga																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513336	44513336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	100	515	0	ENST00000291552.4:c.599G>A	p.Arg200Gln	p.R200Q	ENST00000291552	NM_006758.2	200	cGg/cAg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37091975	37091975	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	161	285	0	ENST00000231790.2:c.2104-2A>T		p.X702_splice	ENST00000231790	NM_000249.3	702																																																																																
ATR	545	MSKCC	GRCh37	3	142178070	142178072	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ATG	ATG	-			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	44	248	0	ENST00000350721.4:c.7346_7348del	p.Ser2449del	p.S2449del	ENST00000350721	NM_001184.3	2449	tCATgg/tgg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361193	66361193	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	102	222	1	ENST00000273854.3:c.979T>C	p.Tyr327His	p.Y327H	ENST00000273854	NM_004439.5	327	Tat/Cat																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522573	176522573	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	224	589	0	ENST00000292408.4:c.1670A>G	p.Asn557Ser	p.N557S	ENST00000292408	NM_213647.1	557	aAc/aGc																																																																															
NBN	4683	MSKCC	GRCh37	8	90958387	90958387	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	54	305	0	ENST00000265433.3:c.2051A>T	p.Asn684Ile	p.N684I	ENST00000265433	NM_002485.4	684	aAt/aTt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135798846	135798846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	75	236	0	ENST00000298552.3:c.397G>A	p.Val133Ile	p.V133I	ENST00000298552	NM_001162426.1	133	Gtc/Atc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391398	139391398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	114	571	0	ENST00000277541.6:c.6793G>A	p.Ala2265Thr	p.A2265T	ENST00000277541	NM_017617.3	2265	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577499	7577500	+	inframe_insertion,splice_region_variant	In_Frame_Ins	INS	-	-	TGGAGTCTT			P-0030376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	629	473	0	ENST00000269305.4:c.773_781dup	p.Ser260_Ser261insLysAspSer	p.S260_S261insKDS	ENST00000269305	NM_001126112.2	261	agt/aAAGACTCCAgt																																																																															
CENPA	1058	MSKCC	GRCh37	2	27015667	27015667	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	181	461	0	ENST00000335756.4:c.254A>C	p.Asn85Thr	p.N85T	ENST00000335756	NM_001809.3	85	aAt/aCt																																																																															
PMS2	5395	MSKCC	GRCh37	7	6038825	6038825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	420	522	2	ENST00000265849.7:c.619G>A	p.Gly207Arg	p.G207R	ENST00000265849	NM_000535.5	207	Gga/Aga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8501018	8501018	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	258	269	0	ENST00000356435.5:c.1864A>G	p.Ser622Gly	p.S622G	ENST00000356435		622	Agt/Ggt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763098116		P-0030384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	58	734	0	ENST00000269305.4:c.830G>A	p.Cys277Tyr	p.C277Y	ENST00000269305	NM_001126112.2	277	tGt/tAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	447	478	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0030479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	795	694	3	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880962	134880962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	457	527	1	ENST00000398015.3:c.1525C>T	p.Arg509Cys	p.R509C	ENST00000398015	NM_004441.4	509	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112154992	112154992	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	565	585	3	ENST00000257430.4:c.1263G>A	p.Trp421Ter	p.W421*	ENST00000257430	NM_000038.5	421	tgG/tgA																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205093	128205093	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1594	435	716	2	ENST00000341105.2:c.348G>A	p.Trp116Ter	p.W116*	ENST00000341105	NM_032638.4	116	tgG/tgA																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473708	67473708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	616	551	5	ENST00000327367.4:c.788C>A	p.Pro263His	p.P263H	ENST00000327367	NM_005902.3	263	cCc/cAc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374930	45374930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	224	582	0	ENST00000262160.6:c.913C>T	p.Pro305Ser	p.P305S	ENST00000262160	NM_005901.5	305	Cca/Tca																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411255	63411256	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0030479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	586	351	1	ENST00000330258.3:c.1911_1912del	p.Glu637AspfsTer69	p.E637Dfs*69	ENST00000330258	NM_152424.3	637	gaGAct/gact																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	89	318	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0030506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	114	555	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
FANCC	2176	MSKCC	GRCh37	9	97864068	97864068	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	151	371	0	ENST00000289081.3:c.1598G>A	p.Trp533Ter	p.W533*	ENST00000289081	NM_000136.2	533	tGg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	52	502	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970991	21970991	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	54	495	0	ENST00000304494.5:c.367delC	p.His123IlefsTer23	p.H123Ifs*23	ENST00000304494	NM_000077.4	123	Cat/at																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	133	973	0	ENST00000374672.4:c.1225A>C	p.Lys409Gln	p.K409Q	ENST00000374672	NM_004235.4	409	Aag/Cag																																																																															
CDK8	1024	MSKCC	GRCh37	13	26975681	26975681	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	56	494	0	ENST00000381527.3:c.1189C>T	p.Gln397Ter	p.Q397*	ENST00000381527	NM_001260.1	397	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577586	7577593	+	frameshift_variant	Frame_Shift_Del	DEL	ATGGTGGT	ATGGTGGT	-			P-0030523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	56	614	0	ENST00000269305.4:c.688_695del	p.Thr230ProfsTer7	p.T230Pfs*7	ENST00000269305	NM_001126112.2	230	ACCACCATc/c																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134898710	134898710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	37	324	0	ENST00000398015.3:c.1768G>A	p.Gly590Arg	p.G590R	ENST00000398015	NM_004441.4	590	Ggg/Agg																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0030586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	195	279	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577552	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCGCCC	TGCCGCCC	-			P-0030586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	347	525	0	ENST00000269305.4:c.729_736del	p.Met243IlefsTer18	p.M243Ifs*18	ENST00000269305	NM_001126112.2	243	atGGGCGGCAtg/attg																																																																															
ALK	238	MSKCC	GRCh37	2	29448393	29448393	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	353	733	0	ENST00000389048.3:c.3106A>G	p.Ile1036Val	p.I1036V	ENST00000389048	NM_004304.4	1036	Atc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	111	508	1	ENST00000269305.4:c.532delC	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943658	9943658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	70	560	1	ENST00000330684.3:c.1283C>T	p.Thr428Met	p.T428M	ENST00000330684	NM_001134407.1	428	aCg/aTg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060806	38060807	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GTAGTGGGGGTCCCCTTTCAGGTGCAGCTGGGACTCGTGGG			P-0030645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	99	870	0	ENST00000250448.2:c.1142_1182dup	p.Ser395ProfsTer8	p.S395Pfs*8	ENST00000250448	NM_004496.3	394	-/CCCACGAGTCCCAGCTGCACCTGAAAGGGGACCCCCACTAC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0030663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	63	548	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220707	1220707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	140	475	0	ENST00000326873.7:c.725G>T	p.Gly242Val	p.G242V	ENST00000326873	NM_000455.4	242	gGg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574027	7574027	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882028		P-0030663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	145	591	1	ENST00000269305.4:c.1000G>T	p.Gly334Trp	p.G334W	ENST00000269305	NM_001126112.2	334	Ggg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132501	11132501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	137	647	1	ENST00000344626.4:c.2717G>T	p.Arg906Leu	p.R906L	ENST00000344626	NM_003072.3	906	cGc/cTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088723	27088724	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0030663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	147	630	1	ENST00000324856.7:c.2332_2333delinsTT	p.Gly778Leu	p.G778L	ENST00000324856	NM_006015.4	778	GGa/TTa																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366751	40366751	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	76	226	0	ENST00000397332.2:c.446G>T	p.Arg149Leu	p.R149L	ENST00000397332	NM_001033082.2	149	cGg/cTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65321197	65321197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	97	379	0	ENST00000342505.4:c.1643C>T	p.Pro548Leu	p.P548L	ENST00000342505	NM_002227.2	548	cCc/cTc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	245912941	245912941	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	80	433	1	ENST00000388985.4:c.1211A>G	p.His404Arg	p.H404R	ENST00000388985		404	cAt/cGt																																																																															
POLE	5426	MSKCC	GRCh37	12	133225620	133225620	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	171	640	1	ENST00000320574.5:c.4044G>T	p.Trp1348Cys	p.W1348C	ENST00000320574	NM_006231.2	1348	tgG/tgT																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082785	16082785	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	30	67	0	ENST00000281043.3:c.599G>T	p.Arg200Leu	p.R200L	ENST00000281043	NM_005378.4	200	cGc/cTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89478264	89478264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	28	506	1	ENST00000336596.2:c.2083G>T	p.Val695Phe	p.V695F	ENST00000336596	NM_005233.5	695	Gtt/Ttt																																																																															
MET	4233	MSKCC	GRCh37	7	116411893	116411893	+	intron_variant	Intron	SNP	C	C	T			P-0030663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	119	811	0	ENST00000397752.3:c.2888-10C>T		p.*963*	ENST00000397752	NM_000245.2																																																																																	
SMO	6608	MSKCC	GRCh37	7	128850354	128850354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	132	580	0	ENST00000249373.3:c.1617G>T	p.Lys539Asn	p.K539N	ENST00000249373	NM_005631.4	539	aaG/aaT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971005	21971005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	59	320	0	ENST00000304494.5:c.353C>T	p.Ala118Val	p.A118V	ENST00000304494	NM_000077.4	118	gCt/gTt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44921902	44921902	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	68	249	1	ENST00000377967.4:c.1436A>T	p.Gln479Leu	p.Q479L	ENST00000377967	NM_021140.2	479	cAg/cTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0030688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	100	418	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729181	66729181	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	114	656	0	ENST00000307102.5:c.389A>G	p.Tyr130Cys	p.Y130C	ENST00000307102	NM_002755.3	130	tAt/tGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29552249	29552250	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAAAGGGAACTCCTCT			P-0030688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	26	464	0	ENST00000358273.4:c.1984_1999dup	p.Met667LysfsTer8	p.M667Kfs*8	ENST00000358273	NM_001042492.2	661	gga/ggAAAAGGGAACTCCTCTa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	137	300	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391024	89391024	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	118	365	0	ENST00000336596.2:c.1095delA	p.Lys365AsnfsTer6	p.K365Nfs*6	ENST00000336596	NM_005233.5	364	Aaa/aa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	101	247	2	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256768	19256769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1202792889		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	48	218	0	ENST00000162023.5:c.944dup	p.Val316SerfsTer6	p.V316Sfs*6	ENST00000162023		315	cca/ccCa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289863	15289863	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201680145		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	59	355	0	ENST00000263388.2:c.3691C>T	p.Arg1231Cys	p.R1231C	ENST00000263388	NM_000435.2	1231	Cgt/Tgt																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	104	322	2	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	19	80	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	83	315	3	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664989	138664989	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	34	82	0	ENST00000330315.3:c.576del	p.Lys193SerfsTer78	p.K193Sfs*78	ENST00000330315	NM_023067.3	192	ccC/cc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	70	216	0	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	85	430	2	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	104	297	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	106	342	1	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675170	30675172	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	116	393	0	ENST00000376406.3:c.3073_3075delAAG	p.Lys1025del	p.K1025del	ENST00000376406	NM_014641.2	1025	AAG/-																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	166	227	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132617	11132617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	127	317	1	ENST00000344626.4:c.2833G>A	p.Ala945Thr	p.A945T	ENST00000344626	NM_003072.3	945	Gca/Aca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831357	72831358	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTG	rs552138038		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	57	160	2	ENST00000268489.5:c.5221_5223dup	p.Gln1741dup	p.Q1741dup	ENST00000268489	NM_006885.3	1741	-/CAA																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	59	232	0	ENST00000307078.5:c.1214_1215delAG	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430901	181430901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	118	383	0	ENST00000325404.1:c.758del	p.Pro253LeufsTer21	p.P253Lfs*21	ENST00000325404	NM_003106.3	251	agC/ag																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749374	41749374	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	43	162	0	ENST00000226382.2:c.421C>T	p.Arg141Ter	p.R141*	ENST00000226382	NM_003924.3	141	Cga/Tga																																																																															
ABL1	25	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	104	334	1	ENST00000318560.5:c.2352delC	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	127	252	4	ENST00000261937.6:c.89dupC	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085825	16085825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	82	263	0	ENST00000281043.3:c.1005del	p.Ser336LeufsTer15	p.S336Lfs*15	ENST00000281043	NM_005378.4	334	gCc/gc																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383944	84383944	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	122	308	0	ENST00000321945.7:c.908del	p.Asn303IlefsTer17	p.N303Ifs*17	ENST00000321945	NM_139076.2	303	aAt/at																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792546	33792546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	17	38	0	ENST00000498907.2:c.775G>A	p.Ala259Thr	p.A259T	ENST00000498907	NM_004364.3	259	Gcg/Acg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264985	46264985	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	105	294	0	ENST00000371998.3:c.1860del	p.Lys620AsnfsTer18	p.K620Nfs*18	ENST00000371998		619	Aaa/aa																																																																															
CD79A	973	MSKCC	GRCh37	19	42383707	42383707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	104	315	1	ENST00000221972.3:c.482C>T	p.Thr161Met	p.T161M	ENST00000221972	NM_021601.3	161	aCg/aTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508257	106508257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	54	185	0	ENST00000359195.3:c.251C>T	p.Ala84Val	p.A84V	ENST00000359195	NM_002649.2	84	gCg/gTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974830	15974830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	81	247	0	ENST00000268712.3:c.4045C>T	p.Arg1349Cys	p.R1349C	ENST00000268712	NM_006311.3	1349	Cgt/Tgt																																																																															
EP300	2033	MSKCC	GRCh37	22	41564569	41564569	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	36	359	0	ENST00000263253.7:c.3994delA	p.Thr1332ProfsTer4	p.T1332Pfs*4	ENST00000263253	NM_001429.3	1331	Aaa/aa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	271	462	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	60	217	2	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
RAB35	11021	MSKCC	GRCh37	12	120535147	120535147	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	215	278	0	ENST00000229340.5:c.508C>T	p.Arg170Ter	p.R170*	ENST00000229340	NM_006861.6	170	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221756	36221756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	108	358	0	ENST00000222270.7:c.5425G>A	p.Ala1809Thr	p.A1809T	ENST00000222270	NM_014727.1	1809	Gcc/Acc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176118142	176118143	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	65	211	0	ENST00000367669.3:c.830_831del	p.Glu277AlafsTer17	p.E277Afs*17	ENST00000367669	NM_022457.5	277	gAG/g																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948208	71948209	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	107	399	0	ENST00000298229.2:c.2927dupC	p.Pro977ThrfsTer7	p.P977Tfs*7	ENST00000298229	NM_001567.3	974	gcc/gCcc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	111	335	0	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570180	95570180	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150514959		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	79	178	1	ENST00000343455.3:c.3553G>A	p.Ala1185Thr	p.A1185T	ENST00000343455	NM_177438.2	1185	Gcc/Acc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	364555	364555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	121	321	0	ENST00000262320.3:c.1007C>T	p.Thr336Met	p.T336M	ENST00000262320	NM_003502.3	336	aCg/aTg																																																																															
ALK	238	MSKCC	GRCh37	2	30143140	30143140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	82	189	0	ENST00000389048.3:c.386G>A	p.Gly129Asp	p.G129D	ENST00000389048	NM_004304.4	129	gGc/gAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914175	32914175	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146351301		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	131	292	1	ENST00000380152.3:c.5683G>A	p.Glu1895Lys	p.E1895K	ENST00000380152		1895	Gag/Aag																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278070	18278070	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	127	425	0	ENST00000222254.8:c.1690A>G	p.Lys564Glu	p.K564E	ENST00000222254	NM_005027.3	564	Aag/Gag																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264407	46264407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	96	282	0	ENST00000371998.3:c.1454G>A	p.Arg485His	p.R485H	ENST00000371998		485	cGt/cAt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371900	55371900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	36	99	0	ENST00000297316.4:c.590C>T	p.Pro197Leu	p.P197L	ENST00000297316	NM_022454.3	197	cCg/cTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351844	89351844	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	170	506	1	ENST00000301030.4:c.1106A>G	p.Lys369Arg	p.K369R	ENST00000301030	NM_001256183.1	369	aAg/aGg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223138	5223138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	71	234	0	ENST00000357368.4:c.2665C>T	p.Arg889Cys	p.R889C	ENST00000357368	NM_002850.3	889	Cgc/Tgc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464968	120464968	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	105	334	0	ENST00000256646.2:c.5104C>T	p.Arg1702Ter	p.R1702*	ENST00000256646	NM_024408.3	1702	Cga/Tga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120471815	120471815	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	77	236	0	ENST00000256646.2:c.3676A>G	p.Ile1226Val	p.I1226V	ENST00000256646	NM_024408.3	1226	Att/Gtt																																																																															
TET1	80312	MSKCC	GRCh37	10	70450870	70450870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	95	237	0	ENST00000373644.4:c.5710C>T	p.Leu1904Phe	p.L1904F	ENST00000373644	NM_030625.2	1904	Ctt/Ttt																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154299	2154299	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146962483		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	69	292	1	ENST00000434045.2:c.629G>A	p.Arg210His	p.R210H	ENST00000434045	NM_001127598.1	210	cGt/cAt																																																																															
WT1	7490	MSKCC	GRCh37	11	32456491	32456491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	28	59	1	ENST00000332351.3:c.401C>T	p.Pro134Leu	p.P134L	ENST00000332351	NM_024426.4	134	cCg/cTg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998597	100998597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	91	255	0	ENST00000325455.5:c.1205G>A	p.Arg402His	p.R402H	ENST00000325455	NM_001202474.3	402	cGt/cAt																																																																															
CBL	867	MSKCC	GRCh37	11	119077259	119077259	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	95	246	0	ENST00000264033.4:c.136del	p.His46ThrfsTer32	p.H46Tfs*32	ENST00000264033	NM_005188.3	44	agC/ag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123622	46123622	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	23	148	0	ENST00000334344.6:c.3G>A	p.Met1?	p.M1?	ENST00000334344	NM_152641.2	1	atG/atA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432375	49432375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	91	362	1	ENST00000301067.7:c.8764C>T	p.Arg2922Trp	p.R2922W	ENST00000301067	NM_003482.3	2922	Cgg/Tgg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856008	111856008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	38	212	1	ENST00000341259.2:c.59C>T	p.Ala20Val	p.A20V	ENST00000341259	NM_005475.2	20	gCg/gTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118814	115118814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	35	280	0	ENST00000257566.3:c.527C>T	p.Ala176Val	p.A176V	ENST00000257566	NM_016569.3	176	gCc/gTc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426787	121426787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	114	329	0	ENST00000257555.6:c.478G>A	p.Ala160Thr	p.A160T	ENST00000257555		160	Gcc/Acc																																																																															
POLE	5426	MSKCC	GRCh37	12	133245404	133245404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	81	321	0	ENST00000320574.5:c.1916G>A	p.Arg639His	p.R639H	ENST00000320574	NM_006231.2	639	cGc/cAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434458	110434458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	58	190	0	ENST00000375856.3:c.3943C>T	p.Pro1315Ser	p.P1315S	ENST00000375856	NM_003749.2	1315	Ccc/Tcc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95574683	95574683	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	96	204	0	ENST00000343455.3:c.2414T>C	p.Leu805Pro	p.L805P	ENST00000343455	NM_177438.2	805	cTg/cCg																																																																															
RAD51	5888	MSKCC	GRCh37	15	41011085	41011085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	99	326	0	ENST00000267868.3:c.518C>T	p.Ala173Val	p.A173V	ENST00000267868	NM_002875.4	173	gCa/gTa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99250803	99250803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	50	201	2	ENST00000268035.6:c.107G>A	p.Gly36Asp	p.G36D	ENST00000268035	NM_000875.3	36	gGc/gAc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99459973	99459973	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	87	298	0	ENST00000268035.6:c.2069A>G	p.Glu690Gly	p.E690G	ENST00000268035	NM_000875.3	690	gAg/gGg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500433	99500433	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	47	287	0	ENST00000268035.6:c.3866A>C	p.Glu1289Ala	p.E1289A	ENST00000268035	NM_000875.3	1289	gAg/gCg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81929486	81929488	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	106	347	0	ENST00000359376.3:c.1151_1153del	p.Asp384del	p.D384del	ENST00000359376	NM_002661.3	383	GAC/-																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349946	89349946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	144	358	0	ENST00000301030.4:c.3004C>T	p.Arg1002Trp	p.R1002W	ENST00000301030	NM_001256183.1	1002	Cgg/Tgg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217622	7217622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	98	290	0	ENST00000380728.2:c.305G>A	p.Arg102Gln	p.R102Q	ENST00000380728		102	cGa/cAa																																																																															
STAT3	6774	MSKCC	GRCh37	17	40485766	40485766	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1281630344		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	97	336	0	ENST00000264657.5:c.974G>A	p.Arg325Gln	p.R325Q	ENST00000264657	NM_139276.2	325	cGg/cAg																																																																															
YES1	7525	MSKCC	GRCh37	18	743328	743328	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	135	337	0	ENST00000314574.4:c.812A>G	p.Glu271Gly	p.E271G	ENST00000314574	NM_005433.3	271	gAa/gGa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39535259	39535259	+	frameshift_variant,start_lost	Frame_Shift_Del	DEL	G	G	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	69	130	1	ENST00000262039.4:c.7del	p.Glu3LysfsTer21	p.E3Kfs*21	ENST00000262039	NM_002647.2	1	atG/at																																																																															
MALT1	10892	MSKCC	GRCh37	18	56376693	56376694	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	145	378	0	ENST00000348428.3:c.737dup	p.Leu246PhefsTer19	p.L246Ffs*19	ENST00000348428	NM_006785.3	245	gtt/gTtt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222382	2222382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	89	210	0	ENST00000398665.3:c.3214C>T	p.Arg1072Cys	p.R1072C	ENST00000398665	NM_032482.2	1072	Cgt/Tgt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15297763	15297763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	127	309	0	ENST00000263388.2:c.1877G>A	p.Ser626Asn	p.S626N	ENST00000263388	NM_000435.2	626	aGc/aAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298074	15298074	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	121	294	0	ENST00000263388.2:c.1682A>G	p.Asp561Gly	p.D561G	ENST00000263388	NM_000435.2	561	gAt/gGt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367046	15367046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	16	192	0	ENST00000263377.2:c.1580C>T	p.Ala527Val	p.A527V	ENST00000263377	NM_058243.2	527	gCc/gTc																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379841	17379841	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	154	371	0	ENST00000359435.4:c.230del	p.Pro77ArgfsTer19	p.P77Rfs*19	ENST00000359435	NM_001033549.1	76	Ccc/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218522	36218522	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	85	210	0	ENST00000222270.7:c.4301A>G	p.Gln1434Arg	p.Q1434R	ENST00000222270	NM_014727.1	1434	cAg/cGg																																																																															
CIC	23152	MSKCC	GRCh37	19	42797894	42797894	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	78	305	0	ENST00000575354.2:c.3949del	p.Asp1317ThrfsTer15	p.D1317Tfs*15	ENST00000575354	NM_015125.3	1316	Ggg/gg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198281502	198281502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	40	409	0	ENST00000335508.6:c.629C>T	p.Ala210Val	p.A210V	ENST00000335508	NM_012433.2	210	gCc/gTc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42839714	42839714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	113	305	0	ENST00000398585.3:c.1525G>A	p.Gly509Arg	p.G509R	ENST00000398585	NM_001135099.1	509	Gga/Aga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47144844	47144844	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	64	381	0	ENST00000409792.3:c.4909A>G	p.Thr1637Ala	p.T1637A	ENST00000409792	NM_014159.6	1637	Acc/Gcc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998192	169998192	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	152	385	0	ENST00000295797.4:c.882+1G>A		p.X294_splice	ENST00000295797	NM_002740.5	294																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66197694	66197694	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	84	270	0	ENST00000273854.3:c.3005T>C	p.Leu1002Ser	p.L1002S	ENST00000273854	NM_004439.5	1002	tTg/tCg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31493321	31493322	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	61	249	0	ENST00000344624.3:c.1834dupC	p.Leu612ProfsTer8	p.L612Pfs*8	ENST00000344624		612	ctg/cCtg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576437	67576437	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141981005		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	114	279	0	ENST00000274335.5:c.716C>T	p.Thr239Met	p.T239M	ENST00000274335		239	aCg/aTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79950656	79950658	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	25	204	0	ENST00000265081.6:c.118_120del	p.Ser40del	p.S40del	ENST00000265081	NM_002439.4	37	aCCTcc/acc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046022	180046022	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	28	40	0	ENST00000261937.6:c.2849C>T	p.Ala950Val	p.A950V	ENST00000261937	NM_182925.4	950	gCg/gTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048231	180048231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	109	353	1	ENST00000261937.6:c.2042C>T	p.Thr681Met	p.T681M	ENST00000261937	NM_182925.4	681	aCg/aTg																																																																															
SMO	6608	MSKCC	GRCh37	7	128850897	128850897	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	68	318	1	ENST00000249373.3:c.1744A>T	p.Asn582Tyr	p.N582Y	ENST00000249373	NM_005631.4	582	Aac/Tac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859494	151859494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	71	246	0	ENST00000262189.6:c.11168C>T	p.Ala3723Val	p.A3723V	ENST00000262189	NM_170606.2	3723	gCt/gTt																																																																															
RAD21	5885	MSKCC	GRCh37	8	117866524	117866525	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	126	297	0	ENST00000297338.2:c.1120dup	p.Ser374PhefsTer10	p.S374Ffs*10	ENST00000297338	NM_006265.2	374	tct/tTct																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971031	21971031	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	67	143	0	ENST00000361570.3:c.493C>A	p.Leu165Met	p.L165M	ENST00000361570	NM_058195.3	165	Ctg/Atg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393614	139393614	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	89	337	0	ENST00000277541.6:c.6032T>C	p.Leu2011Pro	p.L2011P	ENST00000277541	NM_017617.3	2011	cTg/cCg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402418	139402418	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	80	316	1	ENST00000277541.6:c.3499T>C	p.Tyr1167His	p.Y1167H	ENST00000277541	NM_017617.3	1167	Tac/Cac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918250	44918250	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	63	280	0	ENST00000377967.4:c.876-1G>T		p.X292_splice	ENST00000377967	NM_021140.2	292																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53222804	53222804	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	146	327	0	ENST00000375401.3:c.4132T>G	p.Ser1378Ala	p.S1378A	ENST00000375401	NM_004187.3	1378	Tcc/Gcc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239600	53239600	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	89	270	0	ENST00000375401.3:c.1742T>C	p.Val581Ala	p.V581A	ENST00000375401	NM_004187.3	581	gTg/gCg																																																																															
ATRX	546	MSKCC	GRCh37	X	76938920	76938920	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	118	371	0	ENST00000373344.5:c.1828C>T	p.Gln610Ter	p.Q610*	ENST00000373344	NM_000489.3	610	Caa/Taa																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271526	26271527	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	72	184	0	ENST00000305910.3:c.86_87delinsA	p.Ser29LysfsTer8	p.S29Kfs*8	ENST00000305910	NM_003534.2	29	aGC/aA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0030710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	119	615	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0030710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	127	612	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
PARP1	142	MSKCC	GRCh37	1	226590002	226590002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	59	592	1	ENST00000366794.5:c.199C>T	p.Pro67Ser	p.P67S	ENST00000366794	NM_001618.3	67	Cct/Tct																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628093	90628093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	58	725	0	ENST00000330062.3:c.1226G>C	p.Gly409Ala	p.G409A	ENST00000330062	NM_002168.2	409	gGa/gCa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060845	38060845	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	46	647	0	ENST00000250448.2:c.1144del	p.His382ThrfsTer7	p.H382Tfs*7	ENST00000250448	NM_004496.3	382	Cac/ac																																																																															
MAX	4149	MSKCC	GRCh37	14	65568280	65568280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	25	321	0	ENST00000358664.4:c.47C>T	p.Pro16Leu	p.P16L	ENST00000358664	NM_002382.4	16	cCg/cTg																																																																															
ATR	545	MSKCC	GRCh37	3	142281884	142281902	+	frameshift_variant	Frame_Shift_Del	DEL	GTGTAACAAATGACAGGAG	GTGTAACAAATGACAGGAG	-			P-0030725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	21	453	0	ENST00000350721.4:c.342_360del	p.Ser115ArgfsTer44	p.S115Rfs*44	ENST00000350721	NM_001184.3	114	ccCTCCTGTCATTTGTTACAC/cc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522405	157522405	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	27	529	0	ENST00000346085.5:c.4677C>G	p.Phe1559Leu	p.F1559L	ENST00000346085	NM_020732.3	1559	ttC/ttG																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0030729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	1850	740	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	209	484	0	ENST00000250448.2:c.781C>G	p.Arg261Gly	p.R261G	ENST00000250448	NM_004496.3	261	Cgc/Ggc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139873	55139873	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	251	466	0	ENST00000257290.5:c.1534C>T	p.Arg512Ter	p.R512*	ENST00000257290	NM_006206.4	512	Cga/Tga																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176105675	176105675	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1094	251	512	0	ENST00000367669.3:c.840A>C	p.Glu280Asp	p.E280D	ENST00000367669	NM_022457.5	280	gaA/gaC																																																																															
CDH1	999	MSKCC	GRCh37	16	68853186	68853186	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0030729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	324	531	0	ENST00000261769.5:c.1569T>G	p.Tyr523Ter	p.Y523*	ENST00000261769	NM_004360.3	523	taT/taG																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120227	70120236	+	frameshift_variant	Frame_Shift_Del	DEL	AGCAGCAGCA	AGCAGCAGCA	-			P-0030729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	309	685	0	ENST00000245479.2:c.1229_1238del	p.Gln410ProfsTer57	p.Q410Pfs*57	ENST00000245479	NM_000346.3	410	cAGCAGCAGCAc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	966	866	0	ENST00000269305.4:c.511del	p.Glu171ArgfsTer3	p.E171Rfs*3	ENST00000269305	NM_001126112.2	171	Gag/ag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435219	110435219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	124	411	2	ENST00000375856.3:c.3182C>T	p.Ser1061Leu	p.S1061L	ENST00000375856	NM_003749.2	1061	tCg/tTg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563296	21563296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1253	320	807	0	ENST00000382592.4:c.623C>T	p.Pro208Leu	p.P208L	ENST00000382592	NM_014572.2	208	cCg/cTg																																																																															
RB1	5925	MSKCC	GRCh37	13	48954379	48954379	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0030731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	744	512	0	ENST00000267163.4:c.1498+2T>G		p.X500_splice	ENST00000267163	NM_000321.2	500																																																																																
FLT1	2321	MSKCC	GRCh37	13	29001334	29001334	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	169	526	0	ENST00000282397.4:c.1398G>C	p.Trp466Cys	p.W466C	ENST00000282397	NM_002019.4	466	tgG/tgC																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988554	36988554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	355	818	2	ENST00000354822.5:c.99G>A	p.Met33Ile	p.M33I	ENST00000354822	NM_001079668.2	33	atG/atA																																																																															
RASA1	5921	MSKCC	GRCh37	5	86628428	86628428	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	293	423	0	ENST00000274376.6:c.801del	p.Lys267AsnfsTer12	p.K267Nfs*12	ENST00000274376	NM_002890.2	266	gAa/ga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157517301	157517301	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	389	547	1	ENST00000346085.5:c.3865C>T	p.Pro1289Ser	p.P1289S	ENST00000346085	NM_020732.3	1289	Cct/Tct																																																																															
HGF	3082	MSKCC	GRCh37	7	81355313	81355313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	136	440	0	ENST00000222390.5:c.1061G>A	p.Cys354Tyr	p.C354Y	ENST00000222390	NM_000601.4	354	tGc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	316	611	1	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610208	10610208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	226	622	0	ENST00000171111.5:c.502G>T	p.Val168Phe	p.V168F	ENST00000171111	NM_203500.1	168	Gtc/Ttc																																																																															
MGA	23269	MSKCC	GRCh37	15	42028585	42028585	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	151	612	0	ENST00000219905.7:c.4123G>C	p.Glu1375Gln	p.E1375Q	ENST00000219905	NM_001164273.1	1375	Gag/Cag																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138198246	138198246	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200840068		P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	56	290	0	ENST00000237289.4:c.839G>A	p.Arg280Gln	p.R280Q	ENST00000237289	NM_001270507.1	280	cGg/cAg																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233316	69233316	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	146	262	0	ENST00000462284.1:c.1181C>G	p.Ser394Ter	p.S394*	ENST00000462284	NM_002392.5	394	tCa/tGa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892214	9892215	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	234	570	0	ENST00000330684.3:c.2275dup	p.Thr759AsnfsTer27	p.T759Nfs*27	ENST00000330684	NM_001134407.1	759	acc/aAcc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101931	11101931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	80	673	1	ENST00000344626.4:c.1351C>T	p.Arg451Cys	p.R451C	ENST00000344626	NM_003072.3	451	Cgc/Tgc																																																																															
ALK	238	MSKCC	GRCh37	2	29416536	29416536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	81	545	2	ENST00000389048.3:c.4417G>A	p.Gly1473Arg	p.G1473R	ENST00000389048	NM_004304.4	1473	Ggg/Agg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39726936	39726936	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	75	326	0	ENST00000361337.2:c.934C>G	p.Gln312Glu	p.Q312E	ENST00000361337	NM_003286.2	312	Cag/Gag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267295	41267295	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	42	369	0	ENST00000349496.5:c.879C>G	p.Phe293Leu	p.F293L	ENST00000349496	NM_001904.3	293	ttC/ttG																																																																															
ATR	545	MSKCC	GRCh37	3	142268517	142268517	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	72	307	0	ENST00000350721.4:c.2977-2A>C		p.X993_splice	ENST00000350721	NM_001184.3	993																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157099127	157099127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	41	263	1	ENST00000346085.5:c.64G>A	p.Glu22Lys	p.E22K	ENST00000346085	NM_020732.3	22	Gag/Aag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099149	157099149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	45	316	0	ENST00000346085.5:c.86G>A	p.Gly29Glu	p.G29E	ENST00000346085	NM_020732.3	29	gGa/gAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874065	151874065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	59	479	0	ENST00000262189.6:c.8473G>A	p.Glu2825Lys	p.E2825K	ENST00000262189	NM_170606.2	2825	Gaa/Aaa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193121548	193121548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	66	320	0	ENST00000367435.3:c.946C>T	p.His316Tyr	p.H316Y	ENST00000367435	NM_024529.4	316	Cat/Tat																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518630	69518630	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	119	697	0	ENST00000294312.3:c.15T>A	p.Cys5Ter	p.C5*	ENST00000294312	NM_005117.2	5	tgT/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	96	404	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
POLE	5426	MSKCC	GRCh37	12	133218357	133218357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	100	600	1	ENST00000320574.5:c.5254G>A	p.Asp1752Asn	p.D1752N	ENST00000320574	NM_006231.2	1752	Gac/Aac																																																																															
FLT1	2321	MSKCC	GRCh37	13	28919673	28919673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	51	396	0	ENST00000282397.4:c.2264C>A	p.Ser755Tyr	p.S755Y	ENST00000282397	NM_002019.4	755	tCt/tAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42041881	42041881	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	98	466	1	ENST00000219905.7:c.6076G>T	p.Glu2026Ter	p.E2026*	ENST00000219905	NM_001164273.1	2026	Gaa/Taa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679798	88679798	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	101	504	0	ENST00000360948.2:c.665G>C	p.Arg222Pro	p.R222P	ENST00000360948	NM_001012338.2	222	cGa/cCa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640135	3640135	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	148	769	0	ENST00000294008.3:c.3504G>C	p.Met1168Ile	p.M1168I	ENST00000294008	NM_032444.2	1168	atG/atC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	160	597	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
CCNE1	898	MSKCC	GRCh37	19	30303891	30303891	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	105	654	0	ENST00000262643.3:c.127G>C	p.Asp43His	p.D43H	ENST00000262643	NM_001238.2	43	Gat/Cat																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267382	198267382	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	73	465	1	ENST00000335508.6:c.1975C>A	p.Gln659Lys	p.Q659K	ENST00000335508	NM_012433.2	659	Caa/Aaa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520153	9520153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	63	430	0	ENST00000353224.5:c.2116C>A	p.Pro706Thr	p.P706T	ENST00000353224	NM_177990.2	706	Ccg/Acg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730876	40730876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	130	559	1	ENST00000373198.4:c.3659G>T	p.Arg1220Leu	p.R1220L	ENST00000373198	NM_133170.3	1220	cGg/cTg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119720978	119720978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	69	480	0	ENST00000316626.5:c.197C>T	p.Ser66Leu	p.S66L	ENST00000316626		66	tCa/tTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	123	556	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721988	176721988	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	64	412	0	ENST00000439151.2:c.7619C>G	p.Ser2540Cys	p.S2540C	ENST00000439151	NM_022455.4	2540	tCt/tGt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94068097	94068097	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	34	325	0	ENST00000369303.4:c.865C>G	p.Gln289Glu	p.Q289E	ENST00000369303	NM_004440.3	289	Caa/Gaa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106522637	106522637	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	55	393	0	ENST00000359195.3:c.2614A>G	p.Thr872Ala	p.T872A	ENST00000359195	NM_002649.2	872	Act/Gct																																																																															
MET	4233	MSKCC	GRCh37	7	116371803	116371803	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	103	404	0	ENST00000397752.3:c.1282G>C	p.Asp428His	p.D428H	ENST00000397752	NM_000245.2	428	Gac/Cac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151893037	151893037	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	59	388	0	ENST00000262189.6:c.4333C>G	p.Leu1445Val	p.L1445V	ENST00000262189	NM_170606.2	1445	Ctt/Gtt																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538982	23538982	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	126	452	0	ENST00000380871.4:c.457G>C	p.Glu153Gln	p.E153Q	ENST00000380871	NM_006167.3	153	Gaa/Caa																																																																															
TEK	7010	MSKCC	GRCh37	9	27157993	27157993	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	82	585	0	ENST00000380036.4:c.217G>T	p.Glu73Ter	p.E73*	ENST00000380036	NM_000459.3	73	Gaa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426788	49426789	+	missense_variant	Missense_Mutation	DNP	AA	AA	TT			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	10	317	0	ENST00000301067.7:c.11699_11700inv	p.Leu3900Gln	p.L3900Q	ENST00000301067	NM_003482.3	3900	cTT/cAA																																																																															
MGA	23269	MSKCC	GRCh37	15	42054402	42054402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	19	418	0	ENST00000219905.7:c.7586G>A	p.Arg2529Lys	p.R2529K	ENST00000219905	NM_001164273.1	2529	aGa/aAa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14026103	14026103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	10	401	0	ENST00000311895.7:c.1063G>A	p.Glu355Lys	p.E355K	ENST00000311895	NM_005236.2	355	Gaa/Aaa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992630	72992630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	16	371	2	ENST00000268489.5:c.1415C>A	p.Ala472Glu	p.A472E	ENST00000268489	NM_006885.3	472	gCg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578242	7578242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	23	726	3	ENST00000269305.4:c.607G>T	p.Val203Leu	p.V203L	ENST00000269305	NM_001126112.2	203	Gtg/Ttg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138376634	138376634	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	12	530	0	ENST00000289153.2:c.2840C>G	p.Ser947Cys	p.S947C	ENST00000289153	NM_006219.2	947	tCt/tGt																																																																															
TERT	7015	MSKCC	GRCh37	5	1278791	1278791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	11	586	0	ENST00000310581.5:c.2251G>T	p.Ala751Ser	p.A751S	ENST00000310581	NM_198253.2	751	Gcc/Tcc																																																																															
NPM1	4869	MSKCC	GRCh37	5	170817081	170817081	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	11	533	0	ENST00000296930.5:c.85T>G	p.Tyr29Asp	p.Y29D	ENST00000296930	NM_002520.6	29	Tat/Gat																																																																															
NPM1	4869	MSKCC	GRCh37	5	170827907	170827909	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	30	703	0	ENST00000296930.5:c.652_654del	p.Ser218del	p.S218del	ENST00000296930	NM_002520.6	216	cCATca/cca																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467863	50467863	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	42	426	0	ENST00000331340.3:c.1098G>C	p.Gln366His	p.Q366H	ENST00000331340	NM_006060.4	366	caG/caC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249028	55249028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	181	558	0	ENST00000275493.2:c.2326C>T	p.Arg776Cys	p.R776C	ENST00000275493	NM_005228.3	776	Cgc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	131	659	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	265	499	0	ENST00000304494.5:c.247C>A	p.His83Asn	p.H83N	ENST00000304494	NM_000077.4	83	Cac/Aac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044568	47044568	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	32	862	0	ENST00000329236.7:c.1831A>C	p.Thr611Pro	p.T611P	ENST00000329236	NM_001204466.1	611	Act/Cct																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652359	48652359	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141479621		P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	20	930	2	ENST00000376670.3:c.1030G>A	p.Gly344Arg	p.G344R	ENST00000376670	NM_002049.3	344	Ggg/Agg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030585	47030585	+	intron_variant	Intron	SNP	T	T	G			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	44	754	1	ENST00000329236.7:c.201+1688T>G		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
KDM5A	5927	MSKCC	GRCh37	12	419049	419049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	28	588	0	ENST00000399788.2:c.3298G>A	p.Glu1100Lys	p.E1100K	ENST00000399788	NM_001042603.1	1100	Gaa/Aaa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0030818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	202	332	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134644703	134644703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	122	509	1	ENST00000398015.3:c.104C>T	p.Thr35Met	p.T35M	ENST00000398015	NM_004441.4	35	aCg/aTg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141568623	141568623	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	169	657	0	ENST00000220592.5:c.839G>C	p.Arg280Pro	p.R280P	ENST00000220592	NM_012154.3	280	cGc/cCc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099982	157099993	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGC	GGCGGCGGCGGC	-			P-0030818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	61	275	0	ENST00000346085.5:c.933_944del	p.Gly316_Gly319del	p.G316_G319del	ENST00000346085	NM_020732.3	307	GGCGGCGGCGGC/-																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249013	55249013	+	protein_altering_variant	In_Frame_Ins	INS	A	A	GGGG			P-0030818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	452	578	0	ENST00000275493.2:c.2311delinsGGGG	p.Asn771delinsGlyAsp	p.N771delinsGD	ENST00000275493	NM_005228.3	771	Aac/GGGGac																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0030844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	72	344	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0030844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	620	892	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610608	52610609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	96	487	0	ENST00000394830.3:c.3564dup	p.Glu1189ArgfsTer6	p.E1189Rfs*6	ENST00000394830	NM_018313.4	1188	-/A																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223300	5223300	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141070507		P-0030844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	65	686	1	ENST00000357368.4:c.2503C>T	p.Arg835Cys	p.R835C	ENST00000357368	NM_002850.3	835	Cgc/Tgc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73347934	73347934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	66	230	0	ENST00000377767.4:c.1127C>T	p.Ala376Val	p.A376V	ENST00000377767	NM_014953.3	376	gCt/gTt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69028025	69028025	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200550325		P-0030844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	94	516	1	ENST00000288368.4:c.3184C>T	p.Arg1062Cys	p.R1062C	ENST00000288368	NM_024870.2	1062	Cgt/Tgt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115273269	115273269	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	224	463	0	ENST00000438362.2:c.1189G>A	p.Gly397Ser	p.G397S	ENST00000438362	NM_001242891.1	397	Ggt/Agt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681694	30681694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	102	505	1	ENST00000376406.3:c.403G>A	p.Val135Ile	p.V135I	ENST00000376406	NM_014641.2	135	Gtc/Atc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713544	30713546	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0030846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	188	450	0	ENST00000359013.4:c.946_948delAAG	p.Lys316del	p.K316del	ENST00000359013	NM_001024847.2	315	gAGAag/gag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911444	134911444	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149160192		P-0030846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	131	579	1	ENST00000398015.3:c.1909C>T	p.Arg637Cys	p.R637C	ENST00000398015	NM_004441.4	637	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TC			P-0030846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	102	577	0	ENST00000256078.4:c.180_181inv	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggGAaa																																																																															
FH	2271	MSKCC	GRCh37	1	241663812	241663812	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	56	252	0	ENST00000366560.3:c.1315C>T	p.Gln439Ter	p.Q439*	ENST00000366560	NM_000143.3	439	Cag/Tag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715739	30715739	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0030846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	34	372	0	ENST00000359013.4:c.1471+1G>T		p.X491_splice	ENST00000359013	NM_001024847.2	491																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0030848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	87	445	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045518	47045518	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	145	644	0	ENST00000329236.7:c.2251G>T	p.Glu751Ter	p.E751*	ENST00000329236	NM_001204466.1	751	Gag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108192026	108192026	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0030848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	68	325	0	ENST00000278616.4:c.6453-2A>G		p.X2151_splice	ENST00000278616	NM_000051.3	2151																																																																																
MSI1	4440	MSKCC	GRCh37	12	120795651	120795651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	53	476	1	ENST00000257552.2:c.502G>A	p.Glu168Lys	p.E168K	ENST00000257552	NM_002442.3	168	Gaa/Aaa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913464	32913464	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	62	544	0	ENST00000380152.3:c.4972C>G	p.Gln1658Glu	p.Q1658E	ENST00000380152		1658	Cag/Gag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5256120	5256120	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0030848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	103	457	1	ENST00000357368.4:c.717A>T	p.Glu239Asp	p.E239D	ENST00000357368	NM_002850.3	239	gaA/gaT																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137524823	137524823	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0030848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	76	333	1	ENST00000367739.4:c.547-1G>T		p.X183_splice	ENST00000367739	NM_000416.2	183																																																																																
BTK	695	MSKCC	GRCh37	X	100630227	100630227	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	77	437	0	ENST00000308731.7:c.46C>A	p.Gln16Lys	p.Q16K	ENST00000308731	NM_000061.2	16	Cag/Aag																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115280643	115280643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	183	683	0	ENST00000438362.2:c.388G>A	p.Ala130Thr	p.A130T	ENST00000438362	NM_001242891.1	130	Gct/Act																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653834	89653835	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTAT			P-0030910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	129	518	0	ENST00000371953.3:c.133_136dup	p.Tyr46CysfsTer7	p.Y46Cfs*7	ENST00000371953	NM_000314.4	44	-/GTAT																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	206	638	0	ENST00000347630.2:c.398T>G	p.Phe133Cys	p.F133C	ENST00000347630	NM_001007230.1	133	tTc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	213	725	0	ENST00000269305.4:c.470T>C	p.Val157Ala	p.V157A	ENST00000269305	NM_001126112.2	157	gTc/gCc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250825	10250825	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	194	656	0	ENST00000340748.4:c.3655A>T	p.Met1219Leu	p.M1219L	ENST00000340748		1219	Atg/Ttg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135012	11135012	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	171	608	0	ENST00000344626.4:c.2979G>C	p.Glu993Asp	p.E993D	ENST00000344626	NM_003072.3	993	gaG/gaC																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25973236	25973236	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	104	439	0	ENST00000435504.4:c.1189A>C	p.Ser397Arg	p.S397R	ENST00000435504		397	Agt/Cgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0031010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	479	486	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
NF1	4763	MSKCC	GRCh37	17	29654856	29654856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0031031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	57	201	0	ENST00000358273.4:c.5608C>T	p.Arg1870Trp	p.R1870W	ENST00000358273	NM_001042492.2	1870	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242470	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC	rs397517096		P-0031031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	101	449	1	ENST00000275493.2:c.2239_2240delinsCC	p.Leu747Pro	p.L747P	ENST00000275493	NM_005228.3	747	TTa/CCa																																																																															
AR	367	MSKCC	GRCh37	X	66766406	66766406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	78	196	0	ENST00000374690.3:c.1418G>A	p.Gly473Asp	p.G473D	ENST00000374690	NM_000044.3	473	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	263	727	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863296	57863296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	147	821	2	ENST00000228682.2:c.1391G>T	p.Gly464Val	p.G464V	ENST00000228682	NM_005269.2	464	gGt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207059	1207059	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	148	926	0	ENST00000326873.7:c.148del	p.Leu50Ter	p.L50*	ENST00000326873	NM_000455.4	49	taC/ta																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45799273	45799273	+	intron_variant	Intron	SNP	A	A	C			P-0031232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	70	462	0	ENST00000372115.3:c.158-40T>G		p.*53*	ENST00000372115	NM_001048171.1																																																																																	
ANKRD11	29123	MSKCC	GRCh37	16	89347410	89347410	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	112	961	0	ENST00000301030.4:c.5540C>G	p.Ser1847Trp	p.S1847W	ENST00000301030	NM_001256183.1	1847	tCg/tGg																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805562	46805562	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	164	1006	0	ENST00000290295.7:c.394G>T	p.Gly132Ter	p.G132*	ENST00000290295	NM_006361.5	132	Gga/Tga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602891	10602891	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	195	1059	1	ENST00000171111.5:c.687del	p.Thr230ProfsTer8	p.T230Pfs*8	ENST00000171111	NM_203500.1	229	gtG/gt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910253	50910253	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	131	805	1	ENST00000440232.2:c.1508A>T	p.Gln503Leu	p.Q503L	ENST00000440232	NM_002691.3	503	cAg/cTg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52595803	52595804	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTGTCTCAAGATTTCTCCATT			P-0031232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	37	653	0	ENST00000394830.3:c.4091_4111dup	p.Glu1364_Thr1370dup	p.E1364_T1370dup	ENST00000394830	NM_018313.4	1364	gcc/gAATGGAGAAATCTTGAGACAGcc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851784	134851784	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	135	795	0	ENST00000398015.3:c.1190G>T	p.Trp397Leu	p.W397L	ENST00000398015	NM_004441.4	397	tGg/tTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76940480	76940480	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	106	781	1	ENST00000373344.5:c.613A>G	p.Met205Val	p.M205V	ENST00000373344	NM_000489.3	205	Atg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	44	452	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MAX	4149	MSKCC	GRCh37	14	65544661	65544661	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0031283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	81	595	0	ENST00000358664.4:c.265A>T	p.Lys89Ter	p.K89*	ENST00000358664	NM_002382.4	89	Aag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391103	89391103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	35	639	1	ENST00000336596.2:c.1169C>A	p.Thr390Asn	p.T390N	ENST00000336596	NM_005233.5	390	aCc/aAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70350037	70350037	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	51	484	0	ENST00000374080.3:c.4020G>C	p.Gln1340His	p.Q1340H	ENST00000374080		1340	caG/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	369	673	2	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
RHOA	387	MSKCC	GRCh37	3	49400009	49400009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	185	678	1	ENST00000418115.1:c.328G>A	p.Val110Met	p.V110M	ENST00000418115	NM_001664.2	110	Gtg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427491	49427491	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	492	684	1	ENST00000301067.7:c.10997G>C	p.Gly3666Ala	p.G3666A	ENST00000301067	NM_003482.3	3666	gGa/gCa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974745	21974789	+	inframe_deletion	In_Frame_Del	DEL	CCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAG	CCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAG	-			P-0031824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	119	298	0	ENST00000304494.5:c.38_82del	p.Ala13_Glu27del	p.A13_E27del	ENST00000304494	NM_000077.4	13	gCTGACTGGCTGGCCACGGCCGCGGCCCGGGGTCGGGTAGAGGAGGtg/gtg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913381		P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			489	32	332	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			855	95	637	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597395	10597395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			823	118	690	0	ENST00000171111.5:c.1808G>T	p.Gly603Val	p.G603V	ENST00000171111	NM_203500.1	603	gGg/gTg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484596	57484596	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			817	82	497	0	ENST00000371085.3:c.680A>T	p.Gln227Leu	p.Q227L	ENST00000371085	NM_000516.4	227	cAg/cTg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786868	135786868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			635	84	421	0	ENST00000298552.3:c.1001C>T	p.Ser334Leu	p.S334L	ENST00000298552	NM_001162426.1	334	tCg/tTg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201980416	201980416	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			871	85	557	0	ENST00000359651.3:c.152T>G	p.Leu51Trp	p.L51W	ENST00000359651		51	tTg/tGg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748116	41748116	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			136	28	106	0	ENST00000226382.2:c.653C>A	p.Pro218His	p.P218H	ENST00000226382	NM_003924.3	218	cCc/cAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144529	55144529	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			620	101	508	0	ENST00000257290.5:c.2003G>T	p.Gly668Val	p.G668V	ENST00000257290	NM_006206.4	668	gGc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112154846	112154865	+	frameshift_variant	Frame_Shift_Del	DEL	TCCCGGGGCAGTAAAGAGGC	TCCCGGGGCAGTAAAGAGGC	-			P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			820	120	557	0	ENST00000257430.4:c.1119_1138del	p.Arg374GlyfsTer16	p.R374Gfs*16	ENST00000257430	NM_000038.5	373	TCCCGGGGCAGTAAAGAGGCt/t																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500885	8500885	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			811	58	574	0	ENST00000356435.5:c.1997C>G	p.Pro666Arg	p.P666R	ENST00000356435		666	cCt/cGt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786887	135786887	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			597	77	396	0	ENST00000298552.3:c.982C>T	p.Gln328Ter	p.Q328*	ENST00000298552	NM_001162426.1	328	Cag/Tag																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317421	1317421	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			743	48	529	0				ENST00000381566																																																																																		
PTPRD	5789	MSKCC	GRCh37	9	8465650	8465650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	23	368	0	ENST00000356435.5:c.3530G>T	p.Arg1177Leu	p.R1177L	ENST00000356435		1177	cGc/cTc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73334699	73334699	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	36	270	0	ENST00000377767.4:c.2761C>T	p.Gln921Ter	p.Q921*	ENST00000377767	NM_014953.3	921	Cag/Tag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46242716	46242716	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	86	325	0	ENST00000334344.6:c.1678G>T	p.Gly560Ter	p.G560*	ENST00000334344	NM_152641.2	560	Gga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	119	549	0	ENST00000269305.4:c.848del	p.Arg283ProfsTer62	p.R283Pfs*62	ENST00000269305	NM_001126112.2	283	cGc/cc																																																																															
ERF	2077	MSKCC	GRCh37	19	42754666	42754666	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	73	369	1	ENST00000222329.4:c.74G>T	p.Arg25Met	p.R25M	ENST00000222329	NM_006494.2	25	aGg/aTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295773	212295773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	40	435	0	ENST00000342788.4:c.2540G>T	p.Arg847Leu	p.R847L	ENST00000342788	NM_005235.2	847	cGt/cTt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133579	55133579	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	41	397	0	ENST00000257290.5:c.883G>T	p.Ala295Ser	p.A295S	ENST00000257290	NM_006206.4	295	Gct/Tct																																																																															
KDR	3791	MSKCC	GRCh37	4	55979642	55979642	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	49	403	0	ENST00000263923.4:c.805C>A	p.His269Asn	p.H269N	ENST00000263923	NM_002253.2	269	Cat/Aat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249007	+	missense_variant	Missense_Mutation	ONP	GCG	GCG	TTT			P-0033129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	169	421	1	ENST00000275493.2:c.2303_2305delinsTTT	p.Ser768_Val769delinsIleLeu	p.S768_V769delinsIL	ENST00000275493	NM_005228.3	768	aGCGtg/aTTTtg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	127	495	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	146	392	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	443491	443491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	97	420	0	ENST00000399788.2:c.1406C>T	p.Pro469Leu	p.P469L	ENST00000399788	NM_001042603.1	469	cCg/cTg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273884	18273884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201531496		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	192	630	0	ENST00000222254.8:c.1217G>A	p.Arg406His	p.R406H	ENST00000222254	NM_005027.3	406	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	207	602	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	171	662	2	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457390	67457390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	186	544	0	ENST00000327367.4:c.364G>A	p.Val122Met	p.V122M	ENST00000327367	NM_005902.3	122	Gtg/Atg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	229	664	1	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2106225	2106225	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147196739		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	235	686	4	ENST00000219476.3:c.628G>A	p.Ala210Thr	p.A210T	ENST00000219476	NM_000548.3	210	Gcg/Acg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	117	502	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191005	185191005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	202	751	0	ENST00000265026.3:c.1886C>T	p.Pro629Leu	p.P629L	ENST00000265026	NM_004721.4	629	cCt/cTt																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123310820	123310820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	246	570	1	ENST00000358487.5:c.608G>A	p.Arg203His	p.R203H	ENST00000358487	NM_000141.4	203	cGc/cAc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67196695	67196696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	101	406	0	ENST00000312629.5:c.230dupG	p.Tyr78LeufsTer42	p.Y78Lfs*42	ENST00000312629	NM_003952.2	75	aag/aaGg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	46	465	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638918	176638918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	113	496	1	ENST00000439151.2:c.3518G>A	p.Arg1173His	p.R1173H	ENST00000439151	NM_022455.4	1173	cGc/cAc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138198389	138198389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751123351		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	88	279	0	ENST00000237289.4:c.982G>A	p.Ala328Thr	p.A328T	ENST00000237289	NM_001270507.1	328	Gca/Aca																																																																															
ATM	472	MSKCC	GRCh37	11	108216596	108216596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	36	405	1	ENST00000278616.4:c.8545C>T	p.Arg2849Ter	p.R2849*	ENST00000278616	NM_000051.3	2849	Cga/Tga																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103504513	103504513	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140917545		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	24	308	0	ENST00000355739.4:c.134G>A	p.Arg45His	p.R45H	ENST00000355739	NM_000123.3	45	cGc/cAc																																																																															
INSR	3643	MSKCC	GRCh37	19	7122735	7122735	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772334614		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	256	682	0	ENST00000302850.5:c.3419C>T	p.Ala1140Val	p.A1140V	ENST00000302850	NM_000208.2	1140	gCg/gTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10246486	10246486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	207	594	1	ENST00000340748.4:c.4651C>T	p.Arg1551Trp	p.R1551W	ENST00000340748		1551	Cgg/Tgg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299832	15299832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	244	679	0	ENST00000263388.2:c.1346G>A	p.Arg449His	p.R449H	ENST00000263388	NM_000435.2	449	cGc/cAc																																																																															
LMO1	4004	MSKCC	GRCh37	11	8251991	8251991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	242	658	1	ENST00000335790.3:c.86G>A	p.Arg29His	p.R29H	ENST00000335790	NM_002315.2	29	cGc/cAc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752375	57752375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	28	394	0	ENST00000274289.3:c.1198C>T	p.His400Tyr	p.H400Y	ENST00000274289	NM_006622.3	400	Cat/Tat																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001366	29001366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	97	301	0	ENST00000282397.4:c.1366G>A	p.Ala456Thr	p.A456T	ENST00000282397	NM_002019.4	456	Gca/Aca																																																																															
NF1	4763	MSKCC	GRCh37	17	29556292	29556292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	183	540	1	ENST00000358273.4:c.2659G>A	p.Ala887Thr	p.A887T	ENST00000358273	NM_001042492.2	887	Gca/Aca																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	59	444	2	ENST00000264010.4:c.2070delA	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	256	739	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295773	212295773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1299031105		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	24	588	2	ENST00000342788.4:c.2540G>A	p.Arg847His	p.R847H	ENST00000342788	NM_005235.2	847	cGt/cAt																																																																															
INSR	3643	MSKCC	GRCh37	19	7128960	7128960	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139944962		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	15	322	0	ENST00000302850.5:c.2848G>A	p.Val950Ile	p.V950I	ENST00000302850	NM_000208.2	950	Gtc/Atc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732996	30732996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934869		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	124	319	0	ENST00000359013.4:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000359013	NM_001024847.2	562	Cgc/Tgc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979563	7979563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	151	522	1	ENST00000319144.4:c.1462C>T	p.Arg488Cys	p.R488C	ENST00000319144	NM_001139.2	488	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	30	597	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935633	13935633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	165	413	1	ENST00000405192.2:c.1223G>A	p.Arg408His	p.R408H	ENST00000405192	NM_001163147.1	408	cGt/cAt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155627	56155627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	104	300	1	ENST00000399503.3:c.719C>T	p.Ala240Val	p.A240V	ENST00000399503	NM_005921.1	240	gCg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs879255270		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	128	548	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10246522	10246522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	168	494	0	ENST00000340748.4:c.4615G>A	p.Val1539Met	p.V1539M	ENST00000340748		1539	Gtg/Atg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	226	613	3	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt																																																																															
PAK1	5058	MSKCC	GRCh37	11	77066821	77066821	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	156	384	0	ENST00000356341.3:c.664A>G	p.Ile222Val	p.I222V	ENST00000356341	NM_002576.4	222	Att/Gtt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1805473	1805473	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188723332		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	249	651	0	ENST00000260795.2:c.985G>A	p.Val329Ile	p.V329I	ENST00000260795		329	Gtc/Atc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209514	98209514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	111	520	1	ENST00000331920.6:c.4024C>T	p.Arg1342Cys	p.R1342C	ENST00000331920	NM_000264.3	1342	Cgc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821596	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs767179754		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	12	108	0	ENST00000268489.5:c.10579_10581del	p.Gly3527del	p.G3527del	ENST00000268489	NM_006885.3	3527	GGC/-																																																																															
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	44	304	1	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																															
POLE	5426	MSKCC	GRCh37	12	133219579	133219579	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs542430685		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	147	431	0	ENST00000320574.5:c.4555C>T	p.Arg1519Cys	p.R1519C	ENST00000320574	NM_006231.2	1519	Cgc/Tgc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	41	221	1	ENST00000265335.6:c.2801delA	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782596		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	202	576	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65323452	65323452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	150	455	0	ENST00000342505.4:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000342505	NM_002227.2	449	Gcc/Acc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	115	391	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132552	11132552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	216	653	2	ENST00000344626.4:c.2768C>T	p.Ala923Val	p.A923V	ENST00000344626	NM_003072.3	923	gCg/gTg																																																																															
SYK	6850	MSKCC	GRCh37	9	93606304	93606304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	172	622	2	ENST00000375746.1:c.124C>T	p.Arg42Cys	p.R42C	ENST00000375746	NM_001174167.1	42	Cgc/Tgc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135787731	135787731	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151309813		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	54	519	0	ENST00000298552.3:c.851G>A	p.Arg284His	p.R284H	ENST00000298552	NM_001162426.1	284	cGc/cAc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469038	25469038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	230	678	0	ENST00000264709.3:c.1420C>T	p.Arg474Cys	p.R474C	ENST00000264709	NM_175629.2	474	Cgc/Tgc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911520	134911520	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756316035		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	183	481	0	ENST00000398015.3:c.1985G>A	p.Arg662His	p.R662H	ENST00000398015	NM_004441.4	662	cGt/cAt																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979661	7979661	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	58	292	0	ENST00000319144.4:c.1364G>A	p.Gly455Asp	p.G455D	ENST00000319144	NM_001139.2	455	gGc/gAc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135777085	135777085	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	180	470	2	ENST00000298552.3:c.2393C>T	p.Thr798Met	p.T798M	ENST00000298552	NM_001162426.1	798	aCg/aTg																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	76	402	7	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7990723	7990723	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	120	537	0	ENST00000319144.4:c.38A>T	p.Asp13Val	p.D13V	ENST00000319144	NM_001139.2	13	gAc/gTc																																																																															
MED12	9968	MSKCC	GRCh37	X	70351421	70351421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	259	347	0	ENST00000374080.3:c.4069C>T	p.Arg1357Cys	p.R1357C	ENST00000374080		1357	Cgc/Tgc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638555	176638555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	152	557	1	ENST00000439151.2:c.3155G>A	p.Arg1052His	p.R1052H	ENST00000439151	NM_022455.4	1052	cGc/cAc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729271	41729271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	132	406	0	ENST00000242208.4:c.1258G>A	p.Val420Met	p.V420M	ENST00000242208	NM_002192.2	420	Gtg/Atg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	90	457	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																															
PARP1	142	MSKCC	GRCh37	1	226567646	226567647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1159330096		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	174	534	4	ENST00000366794.5:c.1519dup	p.Ser507LysfsTer14	p.S507Kfs*14	ENST00000366794	NM_001618.3	507	agc/aAgc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	25	248	1	ENST00000447079.4:c.4382delG	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg																																																																															
ATM	472	MSKCC	GRCh37	11	108213967	108213967	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	44	319	0	ENST00000278616.4:c.8287C>T	p.Arg2763Ter	p.R2763*	ENST00000278616	NM_000051.3	2763	Cga/Tga																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94203791	94203791	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs190142346		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	12	202	0	ENST00000323929.3:c.863G>A	p.Arg288His	p.R288H	ENST00000323929	NM_005591.3	288	cGt/cAt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59858253	59858253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	134	538	0	ENST00000259008.2:c.1742G>A	p.Arg581Gln	p.R581Q	ENST00000259008	NM_032043.2	581	cGa/cAa																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119582302	119582302	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	144	426	2	ENST00000316626.5:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000316626		367	Cga/Tga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	417080	417080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	129	338	1	ENST00000399788.2:c.3470G>A	p.Arg1157His	p.R1157H	ENST00000399788	NM_001042603.1	1157	cGc/cAc																																																																															
IRF4	3662	MSKCC	GRCh37	6	393199	393199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	45	432	0	ENST00000380956.4:c.47C>T	p.Ala16Val	p.A16V	ENST00000380956	NM_001195286.1	16	gCg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779578	3779578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	219	918	1	ENST00000262367.5:c.5470G>A	p.Ala1824Thr	p.A1824T	ENST00000262367	NM_004380.2	1824	Gcc/Acc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926270	112926270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	41	524	1	ENST00000351677.2:c.1403C>T	p.Thr468Met	p.T468M	ENST00000351677	NM_002834.3	468	aCg/aTg																																																																															
FYN	2534	MSKCC	GRCh37	6	111983115	111983115	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	123	455	0	ENST00000368678.4:c.1432C>T	p.Arg478Ter	p.R478*	ENST00000368678		478	Cga/Tga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15935669	15935669	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	155	363	0	ENST00000268712.3:c.7264C>T	p.Arg2422Ter	p.R2422*	ENST00000268712	NM_006311.3	2422	Cga/Tga																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227948	53227948	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	181	347	0	ENST00000375401.3:c.2366G>A	p.Arg789His	p.R789H	ENST00000375401	NM_004187.3	789	cGc/cAc																																																																															
CASP8	841	MSKCC	GRCh37	2	202149973	202149973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	142	586	1	ENST00000358485.4:c.1414C>T	p.Arg472Ter	p.R472*	ENST00000358485	NM_001080125.1	472	Cga/Tga																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98240450	98240450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	91	371	0	ENST00000331920.6:c.1234G>A	p.Ala412Thr	p.A412T	ENST00000331920	NM_000264.3	412	Gca/Aca																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806569	1806569	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182935140		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	133	670	0	ENST00000260795.2:c.1285G>A	p.Ala429Thr	p.A429T	ENST00000260795		429	Gcg/Acg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239843	98239843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	187	575	1	ENST00000331920.6:c.1489G>A	p.Ala497Thr	p.A497T	ENST00000331920	NM_000264.3	497	Gct/Act																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272105	15272105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	98	491	0	ENST00000263388.2:c.6334G>A	p.Gly2112Ser	p.G2112S	ENST00000263388	NM_000435.2	2112	Ggt/Agt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467573	66467573	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	85	321	0	ENST00000273854.3:c.696del	p.Lys232AsnfsTer36	p.K232Nfs*36	ENST00000273854	NM_004439.5	232	aaA/aa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575133	48575133	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	56	374	0	ENST00000342988.3:c.330del	p.Lys110AsnfsTer12	p.K110Nfs*12	ENST00000342988	NM_005359.5	109	ctA/ct																																																																															
BLM	641	MSKCC	GRCh37	15	91312426	91312426	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55880859		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	107	501	0	ENST00000355112.3:c.2371C>T	p.Arg791Cys	p.R791C	ENST00000355112	NM_000057.2	791	Cgt/Tgt																																																																															
AXL	558	MSKCC	GRCh37	19	41765753	41765753	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761731744		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	101	429	3	ENST00000301178.4:c.2629G>A	p.Ala877Thr	p.A877T	ENST00000301178	NM_021913.4	877	Gct/Act																																																																															
BLM	641	MSKCC	GRCh37	15	91306337	91306337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	81	415	1	ENST00000355112.3:c.2024C>T	p.Ala675Val	p.A675V	ENST00000355112	NM_000057.2	675	gCg/gTg																																																																															
ALK	238	MSKCC	GRCh37	2	30143351	30143351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	30	612	0	ENST00000389048.3:c.175G>A	p.Val59Met	p.V59M	ENST00000389048	NM_004304.4	59	Gtg/Atg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149516607	149516607	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148272095		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	197	630	3	ENST00000261799.4:c.4C>T	p.Arg2Trp	p.R2W	ENST00000261799	NM_002609.3	2	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579365	7579365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	231	608	0	ENST00000269305.4:c.322G>A	p.Gly108Ser	p.G108S	ENST00000269305	NM_001126112.2	108	Ggt/Agt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729551	41729551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	175	593	0	ENST00000242208.4:c.978C>A	p.Phe326Leu	p.F326L	ENST00000242208	NM_002192.2	326	ttC/ttA																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198274568	198274568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	91	507	0	ENST00000335508.6:c.830C>T	p.Ala277Val	p.A277V	ENST00000335508	NM_012433.2	277	gCg/gTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518190	8518190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	148	366	0	ENST00000356435.5:c.1201C>T	p.Arg401Trp	p.R401W	ENST00000356435		401	Cgg/Tgg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24143232	24143232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	244	595	4	ENST00000263121.7:c.464G>A	p.Arg155His	p.R155H	ENST00000263121	NM_003073.3	155	cGc/cAc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36938239	36938239	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199991273		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	259	695	1	ENST00000361632.4:c.722C>T	p.Ala241Val	p.A241V	ENST00000361632		241	gCg/gTg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265314	152265314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	79	260	0	ENST00000206249.3:c.767G>A	p.Arg256Gln	p.R256Q	ENST00000206249	NM_000125.3	256	cGa/cAa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467731	66467731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	111	394	0	ENST00000273854.3:c.538G>A	p.Asp180Asn	p.D180N	ENST00000273854	NM_004439.5	180	Gat/Aat																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739871	46739871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	105	389	0	ENST00000371975.4:c.1672C>T	p.Arg558Cys	p.R558C	ENST00000371975	NM_003579.3	558	Cgc/Tgc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143003202	143003202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	34	404	0	ENST00000262992.4:c.2624C>T	p.Ala875Val	p.A875V	ENST00000262992	NM_001101669.1	875	gCg/gTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350626	15350626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	227	744	1	ENST00000263377.2:c.3289C>T	p.Arg1097Cys	p.R1097C	ENST00000263377	NM_058243.2	1097	Cgt/Tgt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509954	187509954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	46	361	1	ENST00000441802.2:c.13559C>T	p.Pro4520Leu	p.P4520L	ENST00000441802	NM_005245.3	4520	cCg/cTg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123263394	123263394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	174	412	0	ENST00000358487.5:c.1349G>A	p.Arg450His	p.R450H	ENST00000358487	NM_000141.4	450	cGc/cAc																																																																															
MSI1	4440	MSKCC	GRCh37	12	120794732	120794732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	196	595	2	ENST00000257552.2:c.625G>A	p.Ala209Thr	p.A209T	ENST00000257552	NM_002442.3	209	Gcc/Acc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	181	715	8	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	123	563	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107749	30107749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	141	530	0	ENST00000331968.5:c.931C>T	p.Arg311Cys	p.R311C	ENST00000331968	NM_002742.2	311	Cgt/Tgt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144149	11144149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	67	522	1	ENST00000344626.4:c.3730C>T	p.Arg1244Cys	p.R1244C	ENST00000344626	NM_003072.3	1244	Cgc/Tgc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128038147	128038147	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144012336		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	156	436	0	ENST00000285398.2:c.1403C>T	p.Ala468Val	p.A468V	ENST00000285398	NM_000122.1	468	gCg/gTg																																																																															
RAB35	11021	MSKCC	GRCh37	12	120541714	120541714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	211	613	0	ENST00000229340.5:c.143G>A	p.Arg48Gln	p.R48Q	ENST00000229340	NM_006861.6	48	cGg/cAg																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538990	23538990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	143	543	0	ENST00000380871.4:c.449C>T	p.Ser150Leu	p.S150L	ENST00000380871	NM_006167.3	150	tCg/tTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	148	797	3	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138433507	138433507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	76	474	0	ENST00000289153.2:c.1105G>A	p.Val369Ile	p.V369I	ENST00000289153	NM_006219.2	369	Gta/Ata																																																																															
TSC2	7249	MSKCC	GRCh37	16	2108787	2108788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	235	725	0	ENST00000219476.3:c.894dup	p.Val299CysfsTer39	p.V299Cfs*39	ENST00000219476	NM_000548.3	296	-/T																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420745	49420745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	172	561	0	ENST00000301067.7:c.15004C>T	p.Arg5002Trp	p.R5002W	ENST00000301067	NM_003482.3	5002	Cgg/Tgg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391832	139391832	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766836819		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	174	704	2	ENST00000277541.6:c.6359G>A	p.Arg2120His	p.R2120H	ENST00000277541	NM_017617.3	2120	cGc/cAc																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56787287	56787287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	98	560	1	ENST00000337432.4:c.773G>A	p.Arg258His	p.R258H	ENST00000337432	NM_058216.2	258	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112176555	112176555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	52	256	0	ENST00000257430.4:c.5264C>T	p.Ala1755Val	p.A1755V	ENST00000257430	NM_000038.5	1755	gCg/gTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707684	176707684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	151	404	1	ENST00000439151.2:c.5741G>A	p.Arg1914His	p.R1914H	ENST00000439151	NM_022455.4	1914	cGc/cAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373313	118373313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	33	401	3	ENST00000534358.1:c.6706G>A	p.Ala2236Thr	p.A2236T	ENST00000534358	NM_005933.3	2236	Gct/Act																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121256	29121256	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	130	708	0	ENST00000328354.6:c.419G>T	p.Ser140Ile	p.S140I	ENST00000328354	NM_007194.3	140	aGc/aTc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354324	354324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200716081		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	68	584	0	ENST00000262320.3:c.1234C>T	p.Arg412Trp	p.R412W	ENST00000262320	NM_003502.3	412	Cgg/Tgg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589313	67589313	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	21	190	0	ENST00000274335.5:c.1299+2T>C		p.X433_splice	ENST00000274335		433																																																																																
FLT1	2321	MSKCC	GRCh37	13	29001431	29001431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	112	235	1	ENST00000282397.4:c.1301C>T	p.Ala434Val	p.A434V	ENST00000282397	NM_002019.4	434	gCc/gTc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30128222	30128222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	182	608	0	ENST00000263025.4:c.1010C>T	p.Thr337Met	p.T337M	ENST00000263025	NM_002746.2	337	aCg/aTg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524475	44524475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	47	279	0	ENST00000291552.4:c.82C>T	p.Arg28Cys	p.R28C	ENST00000291552	NM_006758.2	28	Cgt/Tgt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226589	2226589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	150	697	4	ENST00000398665.3:c.4069C>T	p.Arg1357Cys	p.R1357C	ENST00000398665	NM_032482.2	1357	Cgc/Tgc																																																																															
LMO1	4004	MSKCC	GRCh37	11	8248579	8248579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	221	678	1	ENST00000335790.3:c.308G>A	p.Arg103Gln	p.R103Q	ENST00000335790	NM_002315.2	103	cGg/cAg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44937723	44937723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	84	273	0	ENST00000377967.4:c.2911C>T	p.Arg971Cys	p.R971C	ENST00000377967	NM_021140.2	971	Cgt/Tgt																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14015969	14015969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	63	270	0	ENST00000311895.7:c.289C>T	p.Arg97Cys	p.R97C	ENST00000311895	NM_005236.2	97	Cgc/Tgc																																																																															
MED12	9968	MSKCC	GRCh37	X	70349036	70349036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	203	286	0	ENST00000374080.3:c.3548C>T	p.Pro1183Leu	p.P1183L	ENST00000374080		1183	cCg/cTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259533	55259533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	139	495	0	ENST00000275493.2:c.2591C>T	p.Ala864Val	p.A864V	ENST00000275493	NM_005228.3	864	gCg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874713	151874713	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	101	397	0	ENST00000262189.6:c.7825C>T	p.Arg2609Ter	p.R2609*	ENST00000262189	NM_170606.2	2609	Cga/Tga																																																																															
ERF	2077	MSKCC	GRCh37	19	42753276	42753276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	98	782	1	ENST00000222329.4:c.988G>A	p.Ala330Thr	p.A330T	ENST00000222329	NM_006494.2	330	Gcc/Acc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599874	10599874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	240	655	0	ENST00000171111.5:c.1702G>A	p.Val568Ile	p.V568I	ENST00000171111	NM_203500.1	568	Gtc/Atc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213611	36213611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	265	711	5	ENST00000222270.7:c.2713G>A	p.Ala905Thr	p.A905T	ENST00000222270	NM_014727.1	905	Gcc/Acc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169092	32169092	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs189264181		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	187	614	1	ENST00000375023.3:c.3941C>T	p.Ala1314Val	p.A1314V	ENST00000375023	NM_004557.3	1314	gCc/gTc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639874	3639874	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	215	608	0	ENST00000294008.3:c.3765G>A	p.Trp1255Ter	p.W1255*	ENST00000294008	NM_032444.2	1255	tgG/tgA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201693	66201693	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142359231		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	117	494	0	ENST00000273854.3:c.2809C>T	p.Arg937Cys	p.R937C	ENST00000273854	NM_004439.5	937	Cgt/Tgt																																																																															
SMO	6608	MSKCC	GRCh37	7	128845485	128845485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	274	758	2	ENST00000249373.3:c.782G>A	p.Arg261His	p.R261H	ENST00000249373	NM_005631.4	261	cGc/cAc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121437361	121437361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	241	701	3	ENST00000257555.6:c.1699G>A	p.Val567Ile	p.V567I	ENST00000257555		567	Gtc/Atc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31379461	31379461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	159	555	0	ENST00000328111.2:c.868G>A	p.Ala290Thr	p.A290T	ENST00000328111	NM_006892.3	290	Gcc/Acc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435129	110435129	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	213	592	3	ENST00000375856.3:c.3272del	p.Pro1091ArgfsTer15	p.P1091Rfs*15	ENST00000375856	NM_003749.2	1091	cCg/cg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047947	180047947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	239	678	1	ENST00000261937.6:c.2228C>T	p.Ala743Val	p.A743V	ENST00000261937	NM_182925.4	743	gCg/gTg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1978301	1978301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	244	678	0	ENST00000382891.5:c.3721G>A	p.Glu1241Lys	p.E1241K	ENST00000382891	NM_133335.3	1241	Gag/Aag																																																																															
SESN3	143686	MSKCC	GRCh37	11	94924617	94924617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	167	566	0	ENST00000536441.1:c.293G>A	p.Arg98His	p.R98H	ENST00000536441	NM_144665.3	98	cGc/cAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964143	28964143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766569666		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	93	394	0	ENST00000282397.4:c.1759G>A	p.Val587Ile	p.V587I	ENST00000282397	NM_002019.4	587	Gtt/Att																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739012	145739012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	145	556	0	ENST00000428558.2:c.2143C>T	p.Arg715Trp	p.R715W	ENST00000428558	NM_004260.3	715	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261368	16261368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	111	522	3	ENST00000375759.3:c.8633C>T	p.Ala2878Val	p.A2878V	ENST00000375759	NM_015001.2	2878	gCg/gTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376665	8376665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	164	559	0	ENST00000356435.5:c.4448C>T	p.Thr1483Met	p.T1483M	ENST00000356435		1483	aCg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845523	151845524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	62	670	0	ENST00000262189.6:c.13488dup	p.Lys4497Ter	p.K4497*	ENST00000262189	NM_170606.2	4496	-/T																																																																															
ARAF	369	MSKCC	GRCh37	X	47422455	47422455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	198	252	0	ENST00000377045.4:c.89G>A	p.Arg30His	p.R30H	ENST00000377045	NM_001654.4	30	cGc/cAc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190344	32190344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146490163		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	99	592	0	ENST00000375023.3:c.395G>A	p.Arg132His	p.R132H	ENST00000375023	NM_004557.3	132	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923807	72923807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	181	582	1	ENST00000268489.5:c.3271G>A	p.Val1091Ile	p.V1091I	ENST00000268489	NM_006885.3	1091	Gtt/Att																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986925	36986925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	212	481	1	ENST00000354822.5:c.764C>T	p.Ala255Val	p.A255V	ENST00000354822	NM_001079668.2	255	gCg/gTg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128015296	128015296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	127	366	0	ENST00000285398.2:c.2225G>A	p.Arg742Gln	p.R742Q	ENST00000285398	NM_000122.1	742	cGg/cAg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245225	46245225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	65	399	1	ENST00000334344.6:c.3319G>A	p.Ala1107Thr	p.A1107T	ENST00000334344	NM_152641.2	1107	Gca/Aca																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99193476	99193476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	230	622	0	ENST00000074304.5:c.2671C>T	p.Arg891Trp	p.R891W	ENST00000074304	NM_001134224.1	891	Cgg/Tgg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21630862	21630862	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202110155		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	106	496	0	ENST00000421138.2:c.742G>A	p.Ala248Thr	p.A248T	ENST00000421138		248	Gca/Aca																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521972	157521972	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	56	355	0	ENST00000346085.5:c.4244A>G	p.Asp1415Gly	p.D1415G	ENST00000346085	NM_020732.3	1415	gAc/gGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49415846	49415846	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs886041398		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	97	450	0	ENST00000301067.7:c.16501C>T	p.Arg5501Ter	p.R5501*	ENST00000301067	NM_003482.3	5501	Cga/Tga																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288743	33288743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	164	425	1	ENST00000374542.5:c.809G>A	p.Arg270His	p.R270H	ENST00000374542	NM_001141970.1	270	cGc/cAc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128051273	128051273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	99	517	0	ENST00000285398.2:c.50G>A	p.Arg17Gln	p.R17Q	ENST00000285398	NM_000122.1	17	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49439750	49439750	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs200119692		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	194	489	0	ENST00000301067.7:c.4694C>T	p.Ala1565Val	p.A1565V	ENST00000301067	NM_003482.3	1565	gCg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229336	36229336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	184	510	0	ENST00000222270.7:c.8026G>A	p.Ala2676Thr	p.A2676T	ENST00000222270	NM_014727.1	2676	Gcc/Acc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845190	151845190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	157	484	0	ENST00000262189.6:c.13822C>T	p.Arg4608Cys	p.R4608C	ENST00000262189	NM_170606.2	4608	Cgc/Tgc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40353823	40353823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	247	533	2	ENST00000293328.3:c.2297C>T	p.Ala766Val	p.A766V	ENST00000293328	NM_012448.3	766	gCg/gTg																																																																															
ACVR1	90	MSKCC	GRCh37	2	158634731	158634731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	76	395	0	ENST00000263640.3:c.455G>A	p.Arg152His	p.R152H	ENST00000263640	NM_001105.4	152	cGc/cAc																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316075	14316075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	16	367	0	ENST00000256196.4:c.350G>A	p.Arg117His	p.R117H	ENST00000256196		117	cGt/cAt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435696	149435696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	129	575	0	ENST00000286301.3:c.2447G>A	p.Arg816His	p.R816H	ENST00000286301	NM_005211.3	816	cGc/cAc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136051	64136051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	204	567	1	ENST00000334205.4:c.1312G>A	p.Ala438Thr	p.A438T	ENST00000334205	NM_003942.2	438	Gca/Aca																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40442026	40442026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	203	687	1	ENST00000345506.4:c.271G>A	p.Ala91Thr	p.A91T	ENST00000345506	NM_003152.3	91	Gcc/Acc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902635	1902635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	206	613	0	ENST00000382891.5:c.254G>A	p.Arg85Gln	p.R85Q	ENST00000382891	NM_133335.3	85	cGg/cAg																																																																															
E2F3	1871	MSKCC	GRCh37	6	20488470	20488470	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147333935		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	52	308	0	ENST00000346618.3:c.1126G>A	p.Ala376Thr	p.A376T	ENST00000346618	NM_001949.4	376	Gct/Act																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431115	49431115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	174	608	1	ENST00000301067.7:c.10024C>T	p.Arg3342Cys	p.R3342C	ENST00000301067	NM_003482.3	3342	Cgc/Tgc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206851	162206851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	122	346	0	ENST00000366898.1:c.824G>A	p.Arg275Gln	p.R275Q	ENST00000366898	NM_004562.2	275	cGg/cAg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141549486	141549486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	161	432	1	ENST00000220592.5:c.2102G>A	p.Gly701Glu	p.G701E	ENST00000220592	NM_012154.3	701	gGg/gAg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082455	16082455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	225	661	2	ENST00000281043.3:c.269G>A	p.Ser90Asn	p.S90N	ENST00000281043	NM_005378.4	90	aGc/aAc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166874	32166874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	244	678	0	ENST00000375023.3:c.4364C>T	p.Ala1455Val	p.A1455V	ENST00000375023	NM_004557.3	1455	gCc/gTc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67590452	67590452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	10	167	0	ENST00000274335.5:c.1514G>A	p.Ser505Asn	p.S505N	ENST00000274335		505	aGc/aAc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9770555	9770555	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	247	578	0	ENST00000377346.4:c.42G>T	p.Lys14Asn	p.K14N	ENST00000377346	NM_005026.3	14	aaG/aaT																																																																															
MTOR	2475	MSKCC	GRCh37	1	11199670	11199670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	199	619	1	ENST00000361445.4:c.4918C>T	p.Arg1640Trp	p.R1640W	ENST00000361445	NM_004958.3	1640	Cgg/Tgg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11264747	11264747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	195	563	0	ENST00000361445.4:c.3815C>T	p.Ala1272Val	p.A1272V	ENST00000361445	NM_004958.3	1272	gCc/gTc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11270923	11270923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	77	452	0	ENST00000361445.4:c.3602G>A	p.Arg1201Gln	p.R1201Q	ENST00000361445	NM_004958.3	1201	cGa/cAa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11298093	11298093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	42	393	0	ENST00000361445.4:c.2015G>A	p.Arg672His	p.R672H	ENST00000361445	NM_004958.3	672	cGc/cAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11303178	11303178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	128	414	0	ENST00000361445.4:c.1405G>A	p.Ala469Thr	p.A469T	ENST00000361445	NM_004958.3	469	Gcc/Acc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258227	16258227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	57	445	0	ENST00000375759.3:c.5492C>T	p.Ala1831Val	p.A1831V	ENST00000375759	NM_015001.2	1831	gCt/gTt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259270	16259270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	73	286	0	ENST00000375759.3:c.6535G>A	p.Ala2179Thr	p.A2179T	ENST00000375759	NM_015001.2	2179	Gca/Aca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261983	16261983	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	44	441	0	ENST00000375759.3:c.9248G>T	p.Ser3083Ile	p.S3083I	ENST00000375759	NM_015001.2	3083	aGc/aTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262442	16262442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	16	249	0	ENST00000375759.3:c.9707C>T	p.Thr3236Ile	p.T3236I	ENST00000375759	NM_015001.2	3236	aCa/aTa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16263659	16263659	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	120	360	0	ENST00000375759.3:c.10028G>A	p.Gly3343Asp	p.G3343D	ENST00000375759	NM_015001.2	3343	gGc/gAc																																																																															
MPL	4352	MSKCC	GRCh37	1	43818396	43818396	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	169	631	0	ENST00000372470.3:c.1861A>G	p.Ile621Val	p.I621V	ENST00000372470	NM_005373.2	621	Att/Gtt																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733478	85733478	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	99	415	0	ENST00000370580.1:c.534A>T	p.Glu178Asp	p.E178D	ENST00000370580	NM_003921.4	178	gaA/gaT																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466402	120466402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	153	516	0	ENST00000256646.2:c.4717C>T	p.Leu1573Phe	p.L1573F	ENST00000256646	NM_024408.3	1573	Ctc/Ttc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120483182	120483182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	34	290	0	ENST00000256646.2:c.3179G>A	p.Cys1060Tyr	p.C1060Y	ENST00000256646	NM_024408.3	1060	tGt/tAt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120483322	120483322	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	97	343	0	ENST00000256646.2:c.3039C>A	p.Cys1013Ter	p.C1013*	ENST00000256646	NM_024408.3	1013	tgC/tgA																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120496192	120496192	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	97	562	0	ENST00000256646.2:c.2339G>T	p.Arg780Met	p.R780M	ENST00000256646	NM_024408.3	780	aGg/aTg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724547	162724547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	48	467	2	ENST00000367921.3:c.319G>A	p.Ala107Thr	p.A107T	ENST00000367921	NM_006182.2	107	Gca/Aca																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731095	162731095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	70	504	0	ENST00000367921.3:c.950C>T	p.Ala317Val	p.A317V	ENST00000367921	NM_006182.2	317	gCc/gTc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193117019	193117019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	27	315	0	ENST00000367435.3:c.752C>T	p.Ala251Val	p.A251V	ENST00000367435	NM_024529.4	251	gCa/gTa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193205388	193205388	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	51	396	0	ENST00000367435.3:c.1319A>G	p.Asp440Gly	p.D440G	ENST00000367435	NM_024529.4	440	gAc/gGc																																																																															
PARP1	142	MSKCC	GRCh37	1	226589935	226589935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	157	491	0	ENST00000366794.5:c.266C>T	p.Ala89Val	p.A89V	ENST00000366794	NM_001618.3	89	gCg/gTg																																																																															
SUFU	51684	MSKCC	GRCh37	10	104389886	104389886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	155	392	1	ENST00000369902.3:c.1429G>A	p.Val477Met	p.V477M	ENST00000369902	NM_016169.3	477	Gtg/Atg																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724281	112724281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	125	385	0	ENST00000369452.4:c.165G>T	p.Lys55Asn	p.K55N	ENST00000369452	NM_007373.3	55	aaG/aaT																																																																															
HRAS	3265	MSKCC	GRCh37	11	532676	532676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	147	816	0	ENST00000311189.7:c.530G>A	p.Ser177Asn	p.S177N	ENST00000311189		177	aGt/aAt																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316397	14316397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	22	439	0	ENST00000256196.4:c.208G>T	p.Ala70Ser	p.A70S	ENST00000256196		70	Gca/Tca																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67196682	67196682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	132	433	0	ENST00000312629.5:c.211C>T	p.Arg71Cys	p.R71C	ENST00000312629	NM_003952.2	71	Cgt/Tgt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941313	71941313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	56	546	1	ENST00000298229.2:c.1088G>A	p.Arg363His	p.R363H	ENST00000298229	NM_001567.3	363	cGc/cAc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77103416	77103417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	99	369	0	ENST00000356341.3:c.149dup	p.Lys51GlufsTer13	p.K51Efs*13	ENST00000356341	NM_002576.4	50	aag/aaAg																																																																															
ATM	472	MSKCC	GRCh37	11	108198403	108198403	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	31	341	0	ENST00000278616.4:c.7007A>G	p.Glu2336Gly	p.E2336G	ENST00000278616	NM_000051.3	2336	gAa/gGa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118368741	118368741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	98	541	0	ENST00000534358.1:c.5755G>A	p.Gly1919Arg	p.G1919R	ENST00000534358	NM_005933.3	1919	Gga/Aga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374115	118374115	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs143525945		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	27	363	0	ENST00000534358.1:c.7508C>A	p.Ala2503Asp	p.A2503D	ENST00000534358	NM_005933.3	2503	gCt/gAt																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125513789	125513789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	87	498	0	ENST00000428830.2:c.917C>T	p.Ala306Val	p.A306V	ENST00000428830	NM_001114121.2	306	gCt/gTt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022832	12022832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	151	482	0	ENST00000396373.4:c.938C>T	p.Ala313Val	p.A313V	ENST00000396373	NM_001987.4	313	gCt/gTt																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870822	12870822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	16	142	1	ENST00000228872.4:c.49G>A	p.Asp17Asn	p.D17N	ENST00000228872	NM_004064.3	17	Gac/Aac																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18499767	18499767	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	70	308	0	ENST00000266497.5:c.1622A>G	p.His541Arg	p.H541R	ENST00000266497		541	cAc/cGc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21630754	21630754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	21	338	0	ENST00000421138.2:c.850C>T	p.Pro284Ser	p.P284S	ENST00000421138		284	Cca/Tca																																																																															
RECQL	5965	MSKCC	GRCh37	12	21636309	21636309	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	72	355	1	ENST00000421138.2:c.700+1G>A		p.X234_splice	ENST00000421138		234																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49427056	49427056	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	118	491	0	ENST00000301067.7:c.11432A>T	p.Gln3811Leu	p.Q3811L	ENST00000301067	NM_003482.3	3811	cAg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433847	49433847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	204	846	0	ENST00000301067.7:c.7706G>A	p.Gly2569Asp	p.G2569D	ENST00000301067	NM_003482.3	2569	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435980	49435980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	218	621	0	ENST00000301067.7:c.6001C>T	p.Arg2001Trp	p.R2001W	ENST00000301067	NM_003482.3	2001	Cgg/Tgg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487277	56487278	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	62	518	2	ENST00000267101.3:c.1428dup	p.Pro477AlafsTer11	p.P477Afs*11	ENST00000267101	NM_001982.3	475	cgg/cGgg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495610	56495610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	156	457	1	ENST00000267101.3:c.3800G>A	p.Arg1267Gln	p.R1267Q	ENST00000267101	NM_001982.3	1267	cGa/cAa																																																																															
POLE	5426	MSKCC	GRCh37	12	133202900	133202900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	139	458	0	ENST00000320574.5:c.6334C>A	p.Leu2112Met	p.L2112M	ENST00000320574	NM_006231.2	2112	Ctg/Atg																																																																															
POLE	5426	MSKCC	GRCh37	12	133215748	133215748	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141519273		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	53	542	0	ENST00000320574.5:c.5515C>T	p.Arg1839Cys	p.R1839C	ENST00000320574	NM_006231.2	1839	Cgc/Tgc																																																																															
POLE	5426	MSKCC	GRCh37	12	133219125	133219125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	193	578	0	ENST00000320574.5:c.4919A>G	p.Asp1640Gly	p.D1640G	ENST00000320574	NM_006231.2	1640	gAc/gGc																																																																															
POLE	5426	MSKCC	GRCh37	12	133233748	133233748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	192	525	0	ENST00000320574.5:c.3556C>T	p.Leu1186Phe	p.L1186F	ENST00000320574	NM_006231.2	1186	Ctc/Ttc																																																																															
POLE	5426	MSKCC	GRCh37	12	133249829	133249829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	147	407	2	ENST00000320574.5:c.1394C>T	p.Ala465Val	p.A465V	ENST00000320574	NM_006231.2	465	gCc/gTc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28885802	28885802	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	98	531	0	ENST00000282397.4:c.3560C>A	p.Pro1187His	p.P1187H	ENST00000282397	NM_002019.4	1187	cCt/cAt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964102	28964102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	92	487	0	ENST00000282397.4:c.1800G>A	p.Met600Ile	p.M600I	ENST00000282397	NM_002019.4	600	atG/atA																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906627	32906627	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80358396		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	37	341	0	ENST00000380152.3:c.1012G>A	p.Ala338Thr	p.A338T	ENST00000380152		338	Gct/Act																																																																															
RB1	5925	MSKCC	GRCh37	13	48942682	48942682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	49	269	0	ENST00000267163.4:c.1069C>T	p.Pro357Ser	p.P357S	ENST00000267163	NM_000321.2	357	Cca/Tca																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514012	103514013	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	76	356	0	ENST00000355739.4:c.830_831del	p.Glu277ValfsTer7	p.E277Vfs*7	ENST00000355739	NM_000123.3	276	gtAGag/gtag																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871619	35871619	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201191831		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	95	312	0	ENST00000216797.5:c.887C>T	p.Thr296Met	p.T296M	ENST00000216797	NM_020529.2	296	aCg/aTg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061069	38061069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	23	192	0	ENST00000250448.2:c.920C>T	p.Ser307Leu	p.S307L	ENST00000250448	NM_004496.3	307	tCg/tTg																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675040	40675040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	180	501	0	ENST00000249776.8:c.4G>A	p.Ala2Thr	p.A2T	ENST00000249776	NM_033286.3	2	Gcg/Acg																																																																															
RAD51	5888	MSKCC	GRCh37	15	41011037	41011037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	203	665	1	ENST00000267868.3:c.470C>T	p.Ala157Val	p.A157V	ENST00000267868	NM_002875.4	157	gCc/gTc																																																																															
MGA	23269	MSKCC	GRCh37	15	41991060	41991060	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	50	321	0	ENST00000219905.7:c.2014-1G>T		p.X672_splice	ENST00000219905	NM_001164273.1	672																																																																																
CD276	80381	MSKCC	GRCh37	15	73994717	73994717	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	291	763	0	ENST00000318443.5:c.201G>A	p.Trp67Ter	p.W67*	ENST00000318443	NM_001024736.1	67	tgG/tgA																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680683	88680683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	229	610	1	ENST00000360948.2:c.574G>A	p.Ala192Thr	p.A192T	ENST00000360948	NM_001012338.2	192	Gct/Act																																																																															
BLM	641	MSKCC	GRCh37	15	91347432	91347433	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	79	313	0	ENST00000355112.3:c.3600dup	p.Gln1201ThrfsTer16	p.Q1201Tfs*16	ENST00000355112	NM_000057.2	1198	-/A																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99250917	99250917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	156	466	1	ENST00000268035.6:c.221G>A	p.Arg74His	p.R74H	ENST00000268035	NM_000875.3	74	cGc/cAc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99456341	99456341	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	114	325	0	ENST00000268035.6:c.1658A>G	p.Asp553Gly	p.D553G	ENST00000268035	NM_000875.3	553	gAc/gGc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396172	396172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	142	426	0	ENST00000262320.3:c.854G>A	p.Arg285Gln	p.R285Q	ENST00000262320	NM_003502.3	285	cGg/cAg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2100432	2100432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	179	492	0	ENST00000219476.3:c.170G>A	p.Arg57His	p.R57H	ENST00000219476	NM_000548.3	57	cGc/cAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136814	2136814	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	100	699	0	ENST00000219476.3:c.4931A>G	p.Asp1644Gly	p.D1644G	ENST00000219476	NM_000548.3	1644	gAc/gGc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639032	3639032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	69	630	0	ENST00000294008.3:c.4607C>T	p.Ala1536Val	p.A1536V	ENST00000294008	NM_032444.2	1536	gCt/gTt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3642778	3642778	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145353518		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	158	668	0	ENST00000294008.3:c.2249C>T	p.Thr750Met	p.T750M	ENST00000294008	NM_032444.2	750	aCg/aTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658617	3658617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	222	835	0	ENST00000294008.3:c.349G>A	p.Ala117Thr	p.A117T	ENST00000294008	NM_032444.2	117	Gcc/Acc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779650	3779650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	208	708	1	ENST00000262367.5:c.5398C>T	p.Arg1800Trp	p.R1800W	ENST00000262367	NM_004380.2	1800	Cgg/Tgg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817760	3817760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	199	574	2	ENST00000262367.5:c.3211G>A	p.Ala1071Thr	p.A1071T	ENST00000262367	NM_004380.2	1071	Gcc/Acc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30129408	30129408	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200652640		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	125	592	1	ENST00000263025.4:c.620C>T	p.Thr207Met	p.T207M	ENST00000263025	NM_002746.2	207	aCg/aTg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868075	56868075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	49	460	1	ENST00000308159.5:c.1573C>T	p.Arg525Trp	p.R525W	ENST00000308159	NM_014669.4	525	Cgg/Tgg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953123	81953123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	40	275	1	ENST00000359376.3:c.2089C>T	p.Arg697Trp	p.R697W	ENST00000359376	NM_002661.3	697	Cgg/Tgg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347463	89347463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	126	519	0	ENST00000301030.4:c.5487G>T	p.Met1829Ile	p.M1829I	ENST00000301030	NM_001256183.1	1829	atG/atT																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348079	89348079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	322	863	3	ENST00000301030.4:c.4871C>T	p.Ala1624Val	p.A1624V	ENST00000301030	NM_001256183.1	1624	gCg/gTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349606	89349606	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	230	827	0	ENST00000301030.4:c.3344T>C	p.Ile1115Thr	p.I1115T	ENST00000301030	NM_001256183.1	1115	aTc/aCc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357036	89357036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	138	384	0	ENST00000301030.4:c.598G>A	p.Ala200Thr	p.A200T	ENST00000301030	NM_001256183.1	200	Gca/Aca																																																																															
FANCA	2175	MSKCC	GRCh37	16	89849432	89849432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	250	627	0	ENST00000389301.3:c.1549C>T	p.Arg517Trp	p.R517W	ENST00000389301	NM_000135.2	517	Cgg/Tgg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12043197	12043197	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	58	263	0	ENST00000353533.5:c.1082T>G	p.Leu361Arg	p.L361R	ENST00000353533	NM_003010.3	361	cTt/cGt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16021300	16021300	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	16	330	0	ENST00000268712.3:c.1957del	p.Met653TrpfsTer115	p.M653Wfs*115	ENST00000268712	NM_006311.3	653	Atg/tg																																																																															
NF1	4763	MSKCC	GRCh37	17	29527519	29527519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	130	603	1	ENST00000358273.4:c.968C>T	p.Ala323Val	p.A323V	ENST00000358273	NM_001042492.2	323	gCc/gTc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264326	30264326	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	26	70	0	ENST00000322652.5:c.65del	p.Gly22GlufsTer50	p.G22Efs*50	ENST00000322652	NM_015355.2	21	Ggg/gg																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428351	33428351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181695922		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	211	660	0	ENST00000335858.7:c.436G>A	p.Gly146Arg	p.G146R	ENST00000335858	NM_133629.2	146	Ggg/Agg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627604	37627604	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	31	482	1	ENST00000447079.4:c.1519G>T	p.Ala507Ser	p.A507S	ENST00000447079	NM_015083.1	507	Gca/Tca																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37864701	37864701	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	136	598	0	ENST00000269571.5:c.353A>G	p.Asp118Gly	p.D118G	ENST00000269571		118	gAc/gGc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453361	40453361	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372745237		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	220	673	2	ENST00000345506.4:c.1058G>A	p.Arg353His	p.R353H	ENST00000345506	NM_003152.3	353	cGc/cAc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40855763	40855763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	123	552	0	ENST00000428826.2:c.2093C>T	p.Ala698Val	p.A698V	ENST00000428826		698	gCc/gTc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870539	40870539	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	311	570	0	ENST00000428826.2:c.864G>T	p.Glu288Asp	p.E288D	ENST00000428826		288	gaG/gaT																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246305	41246305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	96	577	0	ENST00000357654.3:c.1243G>A	p.Val415Ile	p.V415I	ENST00000357654	NM_007294.3	415	Gtt/Att																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439918	56439919	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	71	511	0	ENST00000407977.2:c.673dupC	p.Arg225ProfsTer34	p.R225Pfs*34	ENST00000407977		225	cgc/cCgc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59885994	59885994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	146	557	0	ENST00000259008.2:c.752G>A	p.Arg251His	p.R251H	ENST00000259008	NM_032043.2	251	cGc/cAc																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66511577	66511577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	108	298	0	ENST00000358598.2:c.37C>T	p.Arg13Cys	p.R13C	ENST00000358598	NM_212471.2	13	Cgc/Tgc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375028	45375028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	22	356	1	ENST00000262160.6:c.815C>T	p.Ala272Val	p.A272V	ENST00000262160	NM_005901.5	272	gCa/gTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220661	1220661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	219	760	2	ENST00000326873.7:c.679G>A	p.Gly227Ser	p.G227S	ENST00000326873	NM_000455.4	227	Ggc/Agc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2223370	2223370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	226	628	0	ENST00000398665.3:c.3481G>A	p.Asp1161Asn	p.D1161N	ENST00000398665	NM_032482.2	1161	Gac/Aac																																																																															
GNA11	2767	MSKCC	GRCh37	19	3113379	3113379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	238	553	0	ENST00000078429.4:c.373G>A	p.Glu125Lys	p.E125K	ENST00000078429	NM_002067.2	125	Gag/Aag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220059	5220059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	115	600	0	ENST00000357368.4:c.3656C>T	p.Thr1219Met	p.T1219M	ENST00000357368	NM_002850.3	1219	aCg/aTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10257127	10257127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	220	561	0	ENST00000340748.4:c.2746G>T	p.Asp916Tyr	p.D916Y	ENST00000340748		916	Gac/Tac																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10271059	10271059	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	82	530	2	ENST00000340748.4:c.995+1G>A		p.X332_splice	ENST00000340748		332																																																																																
DNMT1	1786	MSKCC	GRCh37	19	10291104	10291104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	261	722	0	ENST00000340748.4:c.367G>A	p.Ala123Thr	p.A123T	ENST00000340748		123	Gca/Aca																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10305557	10305557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	162	443	0	ENST00000340748.4:c.19C>T	p.Pro7Ser	p.P7S	ENST00000340748		7	Cca/Tca																																																																															
CARM1	10498	MSKCC	GRCh37	19	11030281	11030281	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	52	397	0	ENST00000327064.4:c.1031A>G	p.Asp344Gly	p.D344G	ENST00000327064	NM_199141.1	344	gAc/gGc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11030635	11030635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	122	501	0	ENST00000327064.4:c.1189G>A	p.Gly397Ser	p.G397S	ENST00000327064	NM_199141.1	397	Ggc/Agc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11107024	11107024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	120	438	1	ENST00000344626.4:c.1729G>A	p.Ala577Thr	p.A577T	ENST00000344626	NM_003072.3	577	Gcc/Acc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11118642	11118642	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	188	560	0	ENST00000344626.4:c.2066A>C	p.Lys689Thr	p.K689T	ENST00000344626	NM_003072.3	689	aAg/aCg																																																																															
CALR	811	MSKCC	GRCh37	19	13051598	13051598	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	52	394	2	ENST00000316448.5:c.857A>T	p.Lys286Met	p.K286M	ENST00000316448	NM_004343.3	286	aAg/aTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298742	15298742	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	228	675	1	ENST00000263388.2:c.1556G>T	p.Gly519Val	p.G519V	ENST00000263388	NM_000435.2	519	gGc/gTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302837	15302837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	228	724	1	ENST00000263388.2:c.613C>T	p.Pro205Ser	p.P205S	ENST00000263388	NM_000435.2	205	Cca/Tca																																																																															
JAK3	3718	MSKCC	GRCh37	19	17951082	17951082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	228	539	0	ENST00000458235.1:c.1211G>A	p.Ser404Asn	p.S404N	ENST00000458235	NM_000215.3	404	aGc/aAc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278056	18278056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	196	666	0	ENST00000222254.8:c.1676G>A	p.Arg559His	p.R559H	ENST00000222254	NM_005027.3	559	cGc/cAc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18964115	18964115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	172	476	0	ENST00000262803.5:c.1112C>T	p.Ala371Val	p.A371V	ENST00000262803	NM_002911.3	371	gCg/gTg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18974986	18974986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	138	491	1	ENST00000262803.5:c.2783G>A	p.Arg928His	p.R928H	ENST00000262803	NM_002911.3	928	cGc/cAc																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792666	33792666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	77	120	0	ENST00000498907.2:c.655C>T	p.His219Tyr	p.H219Y	ENST00000498907	NM_004364.3	219	Cac/Tac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212095	36212095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	215	681	0	ENST00000222270.7:c.1846C>T	p.Arg616Trp	p.R616W	ENST00000222270	NM_014727.1	616	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216711	36216711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	135	398	0	ENST00000222270.7:c.3877C>T	p.Arg1293Cys	p.R1293C	ENST00000222270	NM_014727.1	1293	Cgc/Tgc																																																																															
CIC	23152	MSKCC	GRCh37	19	42791588	42791588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	52	503	1	ENST00000575354.2:c.569G>A	p.Arg190His	p.R190H	ENST00000575354	NM_015125.3	190	cGc/cAc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867575	45867575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	215	789	0	ENST00000391945.4:c.733G>A	p.Asp245Asn	p.D245N	ENST00000391945	NM_000400.3	245	Gac/Aac																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905346	50905346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	254	773	0	ENST00000440232.2:c.554C>T	p.Pro185Leu	p.P185L	ENST00000440232	NM_002691.3	185	cCg/cTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919881	50919881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	147	664	0	ENST00000440232.2:c.2968C>T	p.Arg990Cys	p.R990C	ENST00000440232	NM_002691.3	990	Cgc/Tgc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716241	52716241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	172	571	1	ENST00000322088.6:c.685G>A	p.Val229Met	p.V229M	ENST00000322088	NM_014225.5	229	Gtg/Atg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086205	16086205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	132	337	0	ENST00000281043.3:c.1381G>A	p.Ala461Thr	p.A461T	ENST00000281043	NM_005378.4	461	Gct/Act																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46609593	46609593	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	141	704	0	ENST00000263734.3:c.2317C>A	p.Leu773Met	p.L773M	ENST00000263734	NM_001430.4	773	Ctg/Atg																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47596672	47596672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	108	308	0	ENST00000263735.4:c.28G>A	p.Gly10Arg	p.G10R	ENST00000263735	NM_002354.2	10	Ggg/Agg																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873374	136873374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	110	439	1	ENST00000241393.3:c.124C>T	p.Pro42Ser	p.P42S	ENST00000241393	NM_003467.2	42	Ccc/Tcc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017736	31017736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	170	433	0	ENST00000375687.4:c.598G>A	p.Gly200Ser	p.G200S	ENST00000375687	NM_015338.5	200	Ggc/Agc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375105	31375105	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	76	651	0	ENST00000328111.2:c.502A>G	p.Ile168Val	p.I168V	ENST00000328111	NM_006892.3	168	Atc/Gtc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39751878	39751878	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	87	369	0	ENST00000361337.2:c.2239A>G	p.Thr747Ala	p.T747A	ENST00000361337	NM_003286.2	747	Acc/Gcc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41420011	41420011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	124	365	0	ENST00000373198.4:c.310G>A	p.Asp104Asn	p.D104N	ENST00000373198	NM_133170.3	104	Gac/Aac																																																																															
AURKA	6790	MSKCC	GRCh37	20	54958143	54958143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	30	464	0	ENST00000312783.6:c.464G>T	p.Ser155Ile	p.S155I	ENST00000312783	NM_198436.1	155	aGc/aTc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62326475	62326475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	275	777	0	ENST00000508582.2:c.3472G>T	p.Asp1158Tyr	p.D1158Y	ENST00000508582		1158	Gac/Tac																																																																															
ERG	2078	MSKCC	GRCh37	21	39772561	39772561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	85	350	0	ENST00000288319.7:c.680C>T	p.Ala227Val	p.A227V	ENST00000288319	NM_182918.3	227	gCa/gTa																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175800	24175800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	99	391	1	ENST00000263121.7:c.1028C>T	p.Thr343Met	p.T343M	ENST00000263121	NM_003073.3	343	aCg/aTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41513676	41513676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	60	483	0	ENST00000263253.7:c.580G>A	p.Gly194Ser	p.G194S	ENST00000263253	NM_001429.3	194	Ggt/Agt																																																																															
EP300	2033	MSKCC	GRCh37	22	41573548	41573548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	42	651	1	ENST00000263253.7:c.5833G>A	p.Val1945Met	p.V1945M	ENST00000263253	NM_001429.3	1945	Gtg/Atg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12421289	12421289	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	216	607	1	ENST00000287820.6:c.169T>C	p.Ser57Pro	p.S57P	ENST00000287820	NM_015869.4	57	Tcc/Ccc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165140	47165140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	44	306	0	ENST00000409792.3:c.986G>A	p.Arg329Gln	p.R329Q	ENST00000409792	NM_014159.6	329	cGg/cAg																																																																															
MST1	4485	MSKCC	GRCh37	3	49722238	49722238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	148	498	0	ENST00000449682.2:c.1702C>T	p.Arg568Trp	p.R568W	ENST00000449682	NM_020998.3	568	Cgg/Tgg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940997	49940997	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	142	447	0	ENST00000296474.3:c.46C>A	p.Leu16Met	p.L16M	ENST00000296474	NM_002447.2	16	Ctg/Atg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52584583	52584583	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	72	629	1	ENST00000394830.3:c.4430C>A	p.Pro1477His	p.P1477H	ENST00000394830	NM_018313.4	1477	cCt/cAt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643650	52643650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	254	526	0	ENST00000394830.3:c.2246C>A	p.Ala749Asp	p.A749D	ENST00000394830	NM_018313.4	749	gCt/gAt																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72881575	72881575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	138	398	2	ENST00000325599.8:c.544C>T	p.Arg182Ter	p.R182*	ENST00000325599	NM_018130.2	182	Cga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89462291	89462291	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	56	325	0	ENST00000336596.2:c.1763T>C	p.Leu588Ser	p.L588S	ENST00000336596	NM_005233.5	588	tTa/tCa																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205164	128205164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	67	604	0	ENST00000341105.2:c.277C>T	p.Pro93Ser	p.P93S	ENST00000341105	NM_032638.4	93	Ccg/Tcg																																																																															
ATR	545	MSKCC	GRCh37	3	142242884	142242884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	124	469	0	ENST00000350721.4:c.4103G>A	p.Arg1368Gln	p.R1368Q	ENST00000350721	NM_001184.3	1368	cGa/cAa																																																																															
ATR	545	MSKCC	GRCh37	3	142269089	142269089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	57	442	0	ENST00000350721.4:c.2861G>A	p.Cys954Tyr	p.C954Y	ENST00000350721	NM_001184.3	954	tGc/tAc																																																																															
BCL6	604	MSKCC	GRCh37	3	187446988	187446988	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139744042		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	207	701	1	ENST00000232014.4:c.1205G>A	p.Arg402His	p.R402H	ENST00000232014	NM_001130845.1	402	cGc/cAc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801476	1801476	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs200300532		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	130	670	0	ENST00000260795.2:c.382G>A	p.Ala128Thr	p.A128T	ENST00000260795		128	Gct/Act																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807147	1807147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	218	763	1	ENST00000260795.2:c.1478G>A	p.Gly493Asp	p.G493D	ENST00000260795		493	gGc/gAc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1918766	1918766	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	53	254	0	ENST00000382891.5:c.927+2T>C		p.X309_splice	ENST00000382891	NM_133335.3	309																																																																																
PHOX2B	8929	MSKCC	GRCh37	4	41748140	41748140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	108	269	0	ENST00000226382.2:c.629C>T	p.Ala210Val	p.A210V	ENST00000226382	NM_003924.3	210	gCg/gTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55981058	55981058	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	67	419	0	ENST00000263923.4:c.641A>G	p.Tyr214Cys	p.Y214C	ENST00000263923	NM_002253.2	214	tAc/tGc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467937	66467937	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	99	383	0	ENST00000273854.3:c.332A>G	p.Asn111Ser	p.N111S	ENST00000273854	NM_004439.5	111	aAc/aGc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535448	66535448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	121	269	0	ENST00000273854.3:c.13G>A	p.Gly5Arg	p.G5R	ENST00000273854	NM_004439.5	5	Ggg/Agg																																																																															
TET2	54790	MSKCC	GRCh37	4	106155865	106155865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	101	377	0	ENST00000380013.4:c.766G>A	p.Ala256Thr	p.A256T	ENST00000380013	NM_001127208.2	256	Gct/Act																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251901	153251901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	56	492	0	ENST00000281708.4:c.1105G>A	p.Glu369Lys	p.E369K	ENST00000281708	NM_033632.3	369	Gaa/Aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187527265	187527265	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	173	465	1	ENST00000441802.2:c.10309G>A	p.Ala3437Thr	p.A3437T	ENST00000441802	NM_005245.3	3437	Gcg/Acg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187535398	187535398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	93	470	0	ENST00000441802.2:c.9176C>T	p.Thr3059Ile	p.T3059I	ENST00000441802	NM_005245.3	3059	aCt/aTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541412	187541412	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	136	390	0	ENST00000441802.2:c.6328A>G	p.Ser2110Gly	p.S2110G	ENST00000441802	NM_005245.3	2110	Agt/Ggt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584691	187584691	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	63	427	0	ENST00000441802.2:c.3342G>T	p.Gln1114His	p.Q1114H	ENST00000441802	NM_005245.3	1114	caG/caT																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31451720	31451720	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	15	287	0	ENST00000344624.3:c.2602C>A	p.His868Asn	p.H868N	ENST00000344624		868	Cat/Aat																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31464435	31464435	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	196	721	0	ENST00000344624.3:c.2482delA	p.Ile828TyrfsTer7	p.I828Yfs*7	ENST00000344624		828	Ata/ta																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515249	31515249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	92	740	2	ENST00000344624.3:c.1136G>A	p.Gly379Asp	p.G379D	ENST00000344624		379	gGc/gAc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38960564	38960564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	18	217	0	ENST00000357387.3:c.1787C>T	p.Ala596Val	p.A596V	ENST00000357387	NM_152756.3	596	gCc/gTc																																																																															
MSH3	4437	MSKCC	GRCh37	5	80083469	80083469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	134	700	2	ENST00000265081.6:c.2521G>A	p.Ala841Thr	p.A841T	ENST00000265081	NM_002439.4	841	Gct/Act																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149441360	149441360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	71	686	0	ENST00000286301.3:c.1679G>A	p.Ser560Asn	p.S560N	ENST00000286301	NM_005211.3	560	aGt/aAt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149504391	149504391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	151	527	0	ENST00000261799.4:c.1811G>A	p.Arg604His	p.R604H	ENST00000261799	NM_002609.3	604	cGc/cAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721424	176721424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	137	415	0	ENST00000439151.2:c.7055G>A	p.Arg2352Lys	p.R2352K	ENST00000439151	NM_022455.4	2352	aGa/aAa																																																																															
STK19	8859	MSKCC	GRCh37	6	31939990	31939990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	121	558	0	ENST00000375331.2:c.217G>A	p.Ala73Thr	p.A73T	ENST00000375331	NM_004197.1	73	Gct/Act																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32181576	32181576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	272	717	0	ENST00000375023.3:c.2209C>T	p.Pro737Ser	p.P737S	ENST00000375023	NM_004557.3	737	Cca/Tca																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190578	32190578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	166	518	0	ENST00000375023.3:c.161C>T	p.Ala54Val	p.A54V	ENST00000375023	NM_004557.3	54	gCc/gTc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797263	32797263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	258	689	0	ENST00000374899.4:c.1846G>A	p.Ala616Thr	p.A616T	ENST00000374899	NM_018833.2	616	Gcc/Acc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800549	32800549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	318	672	0	ENST00000374899.4:c.998G>A	p.Arg333Gln	p.R333Q	ENST00000374899	NM_018833.2	333	cGg/cAg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32820249	32820249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	75	550	0	ENST00000354258.4:c.809G>A	p.Arg270His	p.R270H	ENST00000354258	NM_000593.5	270	cGc/cAc																																																																															
PIM1	5292	MSKCC	GRCh37	6	37139172	37139172	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	137	350	0	ENST00000373509.5:c.515del	p.Asn172ThrfsTer102	p.N172Tfs*102	ENST00000373509	NM_002648.3	171	gAa/ga																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553470	106553470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	97	277	0	ENST00000369096.4:c.1435C>T	p.Leu479Phe	p.L479F	ENST00000369096	NM_001198.3	479	Ctc/Ttc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106554865	106554865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	29	358	0	ENST00000369096.4:c.1982G>A	p.Cys661Tyr	p.C661Y	ENST00000369096	NM_001198.3	661	tGc/tAc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117641129	117641129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	131	580	1	ENST00000368508.3:c.5842C>T	p.Arg1948Cys	p.R1948C	ENST00000368508	NM_002944.2	1948	Cgt/Tgt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117708058	117708058	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	45	365	0	ENST00000368508.3:c.2119G>A	p.Val707Met	p.V707M	ENST00000368508	NM_002944.2	707	Gtg/Atg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200393	138200393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	48	432	0	ENST00000237289.4:c.1811C>T	p.Thr604Met	p.T604M	ENST00000237289	NM_001270507.1	604	aCg/aTg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005023	150005023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	43	442	1	ENST00000253339.5:c.1202C>T	p.Thr401Ile	p.T401I	ENST00000253339		401	aCa/aTa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976827	2976827	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	222	688	2	ENST00000396946.4:c.1185G>T	p.Gln395His	p.Q395H	ENST00000396946	NM_032415.4	395	caG/caT																																																																															
ETV1	2115	MSKCC	GRCh37	7	13940404	13940404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	141	390	0	ENST00000405192.2:c.1102C>T	p.Arg368Cys	p.R368C	ENST00000405192	NM_001163147.1	368	Cgt/Tgt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467718	50467718	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	140	465	0	ENST00000331340.3:c.953C>A	p.Ala318Asp	p.A318D	ENST00000331340	NM_006060.4	318	gCc/gAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55223559	55223559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	218	489	1	ENST00000275493.2:c.926G>A	p.Arg309Gln	p.R309Q	ENST00000275493	NM_005228.3	309	cGa/cAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55225397	55225397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	167	454	0	ENST00000275493.2:c.1249C>A	p.Leu417Ile	p.L417I	ENST00000275493	NM_005228.3	417	Ctc/Atc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55233015	55233015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	159	345	0	ENST00000275493.2:c.1765C>T	p.Pro589Ser	p.P589S	ENST00000275493	NM_005228.3	589	Ccc/Tcc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508410	106508410	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	47	205	0	ENST00000359195.3:c.404T>C	p.Ile135Thr	p.I135T	ENST00000359195	NM_002649.2	135	aTc/aCc																																																																															
MET	4233	MSKCC	GRCh37	7	116340302	116340302	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	70	279	1	ENST00000397752.3:c.1168del	p.Tyr390ThrfsTer14	p.Y390Tfs*14	ENST00000397752	NM_000245.2	388	caT/ca																																																																															
MET	4233	MSKCC	GRCh37	7	116412250	116412250	+	intron_variant	Intron	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	95	672	2	ENST00000397752.3:c.3028+207C>T		p.*1010*	ENST00000397752	NM_000245.2																																																																																	
MET	4233	MSKCC	GRCh37	7	116417488	116417488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	27	337	0	ENST00000397752.3:c.3305G>A	p.Gly1102Asp	p.G1102D	ENST00000397752	NM_000245.2	1102	gGc/gAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151841812	151841812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	90	294	0	ENST00000262189.6:c.14329C>T	p.Arg4777Trp	p.R4777W	ENST00000262189	NM_170606.2	4777	Cgg/Tgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845229	151845229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	144	412	2	ENST00000262189.6:c.13783C>T	p.Arg4595Cys	p.R4595C	ENST00000262189	NM_170606.2	4595	Cgc/Tgc																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194902	29194902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	77	673	2	ENST00000240100.2:c.826G>A	p.Val276Met	p.V276M	ENST00000240100	NM_001394.6	276	Gtg/Atg																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29195943	29195943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	266	691	0	ENST00000240100.2:c.655G>A	p.Ala219Thr	p.A219T	ENST00000240100	NM_001394.6	219	Gcc/Acc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38173035	38173035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	120	463	1	ENST00000317025.8:c.2014C>A	p.Pro672Thr	p.P672T	ENST00000317025	NM_023034.1	672	Cct/Act																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370751	55370751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	150	412	2	ENST00000297316.4:c.53G>A	p.Ser18Asn	p.S18N	ENST00000297316	NM_022454.3	18	aGc/aAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864734	68864734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	167	515	0	ENST00000288368.4:c.105G>T	p.Glu35Asp	p.E35D	ENST00000288368	NM_024870.2	35	gaG/gaT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046350	69046350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	85	440	0	ENST00000288368.4:c.3823G>A	p.Val1275Ile	p.V1275I	ENST00000288368	NM_024870.2	1275	Gtc/Atc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69069573	69069573	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	53	372	0	ENST00000288368.4:c.4248A>C	p.Glu1416Asp	p.E1416D	ENST00000288368	NM_024870.2	1416	gaA/gaC																																																																															
PREX2	80243	MSKCC	GRCh37	8	69129944	69129944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	86	239	0	ENST00000288368.4:c.4698G>A	p.Met1566Ile	p.M1566I	ENST00000288368	NM_024870.2	1566	atG/atA																																																																															
MYC	4609	MSKCC	GRCh37	8	128752762	128752762	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	46	228	0	ENST00000377970.2:c.923G>T	p.Ser308Ile	p.S308I	ENST00000377970	NM_002467.4	308	aGc/aTc																																																																															
MYC	4609	MSKCC	GRCh37	8	128752788	128752788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	24	211	0	ENST00000377970.2:c.949G>A	p.Val317Ile	p.V317I	ENST00000377970	NM_002467.4	317	Gtc/Atc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141567297	141567297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	200	529	0	ENST00000220592.5:c.917G>A	p.Cys306Tyr	p.C306Y	ENST00000220592	NM_012154.3	306	tGc/tAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449746	8449746	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1424143158		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	180	535	0	ENST00000356435.5:c.3967C>T	p.Arg1323Cys	p.R1323C	ENST00000356435		1323	Cgc/Tgc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98215865	98215865	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	66	522	0	ENST00000331920.6:c.3344C>A	p.Ala1115Asp	p.A1115D	ENST00000331920	NM_000264.3	1115	gCt/gAt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98242740	98242740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	63	543	1	ENST00000331920.6:c.877G>A	p.Asp293Asn	p.D293N	ENST00000331920	NM_000264.3	293	Gac/Aac																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128322074	128322074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	105	419	1	ENST00000265960.3:c.686C>T	p.Ala229Val	p.A229V	ENST00000265960	NM_001006617.1	229	gCc/gTc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300944	137300944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	155	511	1	ENST00000481739.1:c.589G>A	p.Ala197Thr	p.A197T	ENST00000481739	NM_002957.4	197	Gcc/Acc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390759	139390759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	257	760	1	ENST00000277541.6:c.7432G>A	p.Ala2478Thr	p.A2478T	ENST00000277541	NM_017617.3	2478	Gca/Aca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400281	139400281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	80	661	0	ENST00000277541.6:c.4067G>A	p.Arg1356His	p.R1356H	ENST00000277541	NM_017617.3	1356	cGc/cAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402735	139402735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	103	828	1	ENST00000277541.6:c.3274C>A	p.Leu1092Ile	p.L1092I	ENST00000277541	NM_017617.3	1092	Ctt/Att																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409841	139409841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	160	823	0	ENST00000277541.6:c.1915G>A	p.Glu639Lys	p.E639K	ENST00000277541	NM_017617.3	639	Gag/Aag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412721	139412721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	250	730	2	ENST00000277541.6:c.1123G>A	p.Ala375Thr	p.A375T	ENST00000277541	NM_017617.3	375	Gca/Aca																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841144	15841144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	122	222	0	ENST00000307771.7:c.1228C>T	p.Arg410Cys	p.R410C	ENST00000307771	NM_005089.3	410	Cgc/Tgc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933028	39933028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	261	378	0	ENST00000378444.4:c.1571G>A	p.Ser524Asn	p.S524N	ENST00000378444	NM_001123385.1	524	aGc/aAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934165	39934165	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	229	320	0	ENST00000378444.4:c.434T>C	p.Phe145Ser	p.F145S	ENST00000378444	NM_001123385.1	145	tTc/tCc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44935952	44935952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	19	162	0	ENST00000377967.4:c.2717del	p.Asn906MetfsTer31	p.N906Mfs*31	ENST00000377967	NM_021140.2	905	Aaa/aa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412545	63412545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	190	289	0	ENST00000330258.3:c.622G>A	p.Val208Met	p.V208M	ENST00000330258	NM_152424.3	208	Gtg/Atg																																																																															
AR	367	MSKCC	GRCh37	X	66765679	66765679	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	238	409	0	ENST00000374690.3:c.691A>G	p.Thr231Ala	p.T231A	ENST00000374690	NM_000044.3	231	Acc/Gcc																																																																															
ATRX	546	MSKCC	GRCh37	X	76939320	76939320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	34	376	0	ENST00000373344.5:c.1428G>T	p.Gln476His	p.Q476H	ENST00000373344	NM_000489.3	476	caG/caT																																																																															
STAG2	10735	MSKCC	GRCh37	X	123224544	123224544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	16	290	0	ENST00000218089.9:c.3397C>T	p.Arg1133Trp	p.R1133W	ENST00000218089	NM_001042749.1	1133	Cgg/Tgg																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152857973	152857973	+	synonymous_variant	Silent	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	44	89	0	ENST00000406277.2:c.642G>A	p.Pro214=	p.P214=	ENST00000406277	NM_152274.4	214	ccG/ccA																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881329	37881332	+	missense_variant	Missense_Mutation	ONP	CTCG	CTCG	ATCA			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	142	655	0	ENST00000269571.5:c.2521_2524delinsATCA	p.Leu841_Val842delinsIleIle	p.L841_V842delinsII	ENST00000269571		841	CTCGta/ATCAta																																																																															
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	106	424	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865500	57865500	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	49	395	0	ENST00000228682.2:c.2981del	p.Pro994HisfsTer26	p.P994Hfs*26	ENST00000228682	NM_005269.2	993	Ccc/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923714	72923714	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	39	402	0	ENST00000268489.5:c.3364C>T	p.Gln1122Ter	p.Q1122*	ENST00000268489	NM_006885.3	1122	Cag/Tag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10259590	10259590	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	83	424	0	ENST00000340748.4:c.2642A>G	p.Lys881Arg	p.K881R	ENST00000340748		881	aAa/aGa																																																																															
RYBP	23429	MSKCC	GRCh37	3	72428433	72428433	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	68	395	0	ENST00000477973.2:c.569G>T	p.Val191Phe	p.V191F	ENST00000477973	NM_012234.5	191	Gtt/Ttt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629358	187629358	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	73	415	0	ENST00000441802.2:c.1624G>T	p.Asp542Tyr	p.D542Y	ENST00000441802	NM_005245.3	542	Gac/Tac																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638804	176638804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	82	353	0	ENST00000439151.2:c.3404C>T	p.Pro1135Leu	p.P1135L	ENST00000439151	NM_022455.4	1135	cCa/cTa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527741	157527742	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	39	319	0	ENST00000346085.5:c.5471dup	p.Asp1825Ter	p.D1825*	ENST00000346085	NM_020732.3	1822	-/G																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971053	21971054	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0034868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	98	302	0	ENST00000304494.5:c.303_304dup	p.Ala102GlyfsTer45	p.A102Gfs*45	ENST00000304494	NM_000077.4	102	gcg/gGGcg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030518	47030518	+	intron_variant	Intron	SNP	G	G	A			P-0034868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	16	199	0	ENST00000329236.7:c.201+1621G>A		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
TNFRSF14	8764	MSKCC	GRCh37	1	2492096	2492097	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	67	582	0	ENST00000355716.4:c.500dupC	p.Thr169AspfsTer65	p.T169Dfs*65	ENST00000355716	NM_003820.2	165	tgc/tgCc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8075573	8075573	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	44	547	0	ENST00000377482.5:c.107G>T	p.Ser36Ile	p.S36I	ENST00000377482	NM_018948.3	36	aGt/aTt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784896	9784896	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	35	676	0	ENST00000377346.4:c.2899C>A	p.Leu967Met	p.L967M	ENST00000377346	NM_005026.3	967	Ctg/Atg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187068	11187068	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	82	499	0	ENST00000361445.4:c.6350A>G	p.Gln2117Arg	p.Q2117R	ENST00000361445	NM_004958.3	2117	cAg/cGg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187864	11187864	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	41	453	0	ENST00000361445.4:c.6034-1G>T		p.X2012_splice	ENST00000361445	NM_004958.3	2012																																																																																
MTOR	2475	MSKCC	GRCh37	1	11294323	11294323	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	41	505	0	ENST00000361445.4:c.2209-1G>T		p.X737_splice	ENST00000361445	NM_004958.3	737																																																																																
MTOR	2475	MSKCC	GRCh37	1	11307962	11307962	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	42	486	0	ENST00000361445.4:c.1030G>T	p.Gly344Ter	p.G344*	ENST00000361445	NM_004958.3	344	Gga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11317178	11317178	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	33	504	0	ENST00000361445.4:c.316A>G	p.Arg106Gly	p.R106G	ENST00000361445	NM_004958.3	106	Aga/Gga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255464	16255464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	52	457	0	ENST00000375759.3:c.2729C>T	p.Ser910Phe	p.S910F	ENST00000375759	NM_015001.2	910	tCt/tTt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261251	16261251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	43	488	0	ENST00000375759.3:c.8516C>T	p.Pro2839Leu	p.P2839L	ENST00000375759	NM_015001.2	2839	cCg/cTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261744	16261744	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	28	550	0	ENST00000375759.3:c.9012del	p.Ser3006AlafsTer16	p.S3006Afs*16	ENST00000375759	NM_015001.2	3003	tcG/tc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088789	27088789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	41	487	1	ENST00000324856.7:c.2398G>A	p.Gly800Arg	p.G800R	ENST00000324856	NM_006015.4	800	Ggg/Agg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101405	27101405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	38	494	0	ENST00000324856.7:c.4687C>T	p.Pro1563Ser	p.P1563S	ENST00000324856	NM_006015.4	1563	Ccc/Tcc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107006	27107006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	32	505	0	ENST00000324856.7:c.6617C>T	p.Thr2206Ile	p.T2206I	ENST00000324856	NM_006015.4	2206	aCa/aTa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36945038	36945038	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	34	669	0	ENST00000361632.4:c.60del	p.Gly21GlufsTer83	p.G21Efs*83	ENST00000361632		20	ccC/cc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46527599	46527599	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	44	454	0	ENST00000262741.5:c.764+2T>C		p.X255_splice	ENST00000262741	NM_003629.3	255																																																																																
RAD54L	8438	MSKCC	GRCh37	1	46739403	46739403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	34	483	0	ENST00000371975.4:c.1594C>A	p.Leu532Met	p.L532M	ENST00000371975	NM_003579.3	532	Ctg/Atg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	73	419	5	ENST00000342505.4:c.2580dupA	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																																																															
JAK1	3716	MSKCC	GRCh37	1	65313359	65313359	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	84	447	1	ENST00000342505.4:c.1756-1G>T		p.X586_splice	ENST00000342505	NM_002227.2	586																																																																																
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	40	420	2	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72058505	72058505	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	50	477	0	ENST00000357731.5:c.935T>A	p.Leu312His	p.L312H	ENST00000357731	NM_173808.2	312	cTt/cAt																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429330	78429330	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	53	575	0	ENST00000370768.2:c.1112del	p.Gly371AspfsTer20	p.G371Dfs*20	ENST00000370768	NM_003902.3	371	gGa/ga																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430035	78430035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	22	312	0	ENST00000370768.2:c.844A>G	p.Ile282Val	p.I282V	ENST00000370768	NM_003902.3	282	Att/Gtt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115273140	115273140	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	39	519	0	ENST00000438362.2:c.1318A>G	p.Thr440Ala	p.T440A	ENST00000438362	NM_001242891.1	440	Act/Gct																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115280598	115280598	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	51	594	1	ENST00000438362.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000438362	NM_001242891.1	145	Cga/Tga																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115282457	115282457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	45	527	0	ENST00000438362.2:c.193G>T	p.Gly65Cys	p.G65C	ENST00000438362	NM_001242891.1	65	Ggt/Tgt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120460367	120460367	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	51	513	0	ENST00000256646.2:c.5948G>T	p.Trp1983Leu	p.W1983L	ENST00000256646	NM_024408.3	1983	tGg/tTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120461173	120461173	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	44	385	0	ENST00000256646.2:c.5785C>A	p.Leu1929Met	p.L1929M	ENST00000256646	NM_024408.3	1929	Ctg/Atg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120478097	120478097	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs138122751		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	53	430	0	ENST00000256646.2:c.3653G>A	p.Arg1218Gln	p.R1218Q	ENST00000256646	NM_024408.3	1218	cGg/cAg																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874149	155874149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	44	613	0	ENST00000368323.3:c.382C>T	p.Pro128Ser	p.P128S	ENST00000368323	NM_006912.5	128	Cct/Tct																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846279	156846279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368806213		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	48	726	1	ENST00000524377.1:c.1720C>T	p.Arg574Cys	p.R574C	ENST00000524377	NM_002529.3	574	Cgc/Tgc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724529	162724529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	78	535	0	ENST00000367921.3:c.301G>A	p.Gly101Arg	p.G101R	ENST00000367921	NM_006182.2	101	Ggg/Agg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729618	162729618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	42	490	0	ENST00000367921.3:c.704G>A	p.Gly235Asp	p.G235D	ENST00000367921	NM_006182.2	235	gGt/gAt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162741999	162741999	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	43	477	1	ENST00000367921.3:c.1690A>T	p.Thr564Ser	p.T564S	ENST00000367921	NM_006182.2	564	Act/Tct																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748401	162748401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	37	502	0	ENST00000367921.3:c.2315C>T	p.Ala772Val	p.A772V	ENST00000367921	NM_006182.2	772	gCc/gTc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163317611	163317611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	22	291	0	ENST00000271452.3:c.1007C>T	p.Thr336Ile	p.T336I	ENST00000271452	NM_145697.2	336	aCt/aTt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175958556	175958556	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	52	520	0	ENST00000367669.3:c.1789G>T	p.Gly597Ter	p.G597*	ENST00000367669	NM_022457.5	597	Gga/Tga																																																																															
CDC73	79577	MSKCC	GRCh37	1	193117013	193117013	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	39	380	0	ENST00000367435.3:c.750del	p.Phe250LeufsTer7	p.F250Lfs*7	ENST00000367435	NM_024529.4	249	aTt/at																																																																															
PARP1	142	MSKCC	GRCh37	1	226578183	226578183	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	38	523	0	ENST00000366794.5:c.545A>C	p.Lys182Thr	p.K182T	ENST00000366794	NM_001618.3	182	aAg/aCg																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246670393	246670393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	30	417	0	ENST00000388985.4:c.127G>A	p.Gly43Arg	p.G43R	ENST00000388985		43	Ggg/Agg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115832	8115832	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	67	567	0	ENST00000346208.3:c.1178C>G	p.Pro393Arg	p.P393R	ENST00000346208		393	cCg/cGg																																																																															
RET	5979	MSKCC	GRCh37	10	43601828	43601828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	46	492	0	ENST00000355710.3:c.872C>T	p.Thr291Ile	p.T291I	ENST00000355710	NM_020975.4	291	aCc/aTc																																																																															
RET	5979	MSKCC	GRCh37	10	43604628	43604628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	33	641	1	ENST00000355710.3:c.1213C>T	p.Pro405Ser	p.P405S	ENST00000355710	NM_020975.4	405	Ccc/Tcc																																																																															
RET	5979	MSKCC	GRCh37	10	43619159	43619159	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	82	573	0	ENST00000355710.3:c.2842G>T	p.Gly948Trp	p.G948W	ENST00000355710	NM_020975.4	948	Ggg/Tgg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851312	63851312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	47	576	0	ENST00000279873.7:c.2090C>T	p.Ser697Phe	p.S697F	ENST00000279873	NM_032199.2	697	tCc/tTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692769	89692769	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	88	449	0	ENST00000371953.3:c.254-1G>T		p.X85_splice	ENST00000371953	NM_000314.4	85																																																																																
PTEN	5728	MSKCC	GRCh37	10	89692885	89692885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	55	319	0	ENST00000371953.3:c.369C>A	p.His123Gln	p.H123Q	ENST00000371953	NM_000314.4	123	caC/caA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692958	89692958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	61	487	0	ENST00000371953.3:c.442G>A	p.Ala148Thr	p.A148T	ENST00000371953	NM_000314.4	148	Gca/Aca																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925378	114925378	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	54	649	2	ENST00000543371.1:c.1456G>T	p.Asp486Tyr	p.D486Y	ENST00000543371	NM_001198531.1	486	Gat/Tat																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123256195	123256195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	30	428	0	ENST00000358487.5:c.1714C>A	p.Leu572Ile	p.L572I	ENST00000358487	NM_000141.4	572	Ctc/Atc																																																																															
WT1	7490	MSKCC	GRCh37	11	32417914	32417914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	48	544	0	ENST00000332351.3:c.1138C>T	p.Arg380Trp	p.R380W	ENST00000332351	NM_024426.4	380	Cgg/Tgg																																																																															
WT1	7490	MSKCC	GRCh37	11	32449604	32449604	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	38	490	0	ENST00000332351.3:c.770G>A	p.Gly257Asp	p.G257D	ENST00000332351	NM_024426.4	257	gGt/gAt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575448	64575448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	44	660	0	ENST00000337652.1:c.584G>A	p.Gly195Glu	p.G195E	ENST00000337652	NM_130803.2	195	gGg/gAg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941215	71941215	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	41	781	2	ENST00000298229.2:c.990G>T	p.Gln330His	p.Q330H	ENST00000298229	NM_001567.3	330	caG/caT																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946340	71946340	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	42	727	1	ENST00000298229.2:c.2504G>T	p.Gly835Val	p.G835V	ENST00000298229	NM_001567.3	835	gGg/gTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948185	71948185	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	42	799	1	ENST00000298229.2:c.2897C>A	p.Ala966Asp	p.A966D	ENST00000298229	NM_001567.3	966	gCt/gAt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94224025	94224025	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	89	529	0	ENST00000323929.3:c.127A>T	p.Ile43Phe	p.I43F	ENST00000323929	NM_005591.3	43	Att/Ttt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94224041	94224041	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	85	527	0	ENST00000323929.3:c.111del	p.Phe37LeufsTer2	p.F37Lfs*2	ENST00000323929	NM_005591.3	37	ttT/tt																																																																															
PGR	5241	MSKCC	GRCh37	11	100962543	100962544	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	44	626	1	ENST00000325455.5:c.1853dup	p.Asn618LysfsTer8	p.N618Kfs*8	ENST00000325455	NM_001202474.3	618	aac/aaAc																																																																															
PGR	5241	MSKCC	GRCh37	11	100999546	100999546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	39	862	6	ENST00000325455.5:c.256G>A	p.Ala86Thr	p.A86T	ENST00000325455	NM_001202474.3	86	Gca/Aca																																																																															
BIRC3	330	MSKCC	GRCh37	11	102207515	102207515	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	39	485	0	ENST00000263464.3:c.1604C>A	p.Pro535His	p.P535H	ENST00000263464	NM_001165.4	535	cCc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108124663	108124663	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs201762714		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	100	513	0	ENST00000278616.4:c.2021A>G	p.His674Arg	p.H674R	ENST00000278616	NM_000051.3	674	cAc/cGc																																																																															
ATM	472	MSKCC	GRCh37	11	108129720	108129721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	53	577	0	ENST00000278616.4:c.2387dup	p.Asn796LysfsTer2	p.N796Kfs*2	ENST00000278616	NM_000051.3	795	cca/ccAa																																																																															
ATM	472	MSKCC	GRCh37	11	108142067	108142067	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	54	590	1	ENST00000278616.4:c.3011G>T	p.Ser1004Ile	p.S1004I	ENST00000278616	NM_000051.3	1004	aGc/aTc																																																																															
ATM	472	MSKCC	GRCh37	11	108204642	108204642	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	63	316	0	ENST00000278616.4:c.7957A>G	p.Ile2653Val	p.I2653V	ENST00000278616	NM_000051.3	2653	Att/Gtt																																																																															
ATM	472	MSKCC	GRCh37	11	108216620	108216620	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	45	383	0	ENST00000278616.4:c.8569G>T	p.Ala2857Ser	p.A2857S	ENST00000278616	NM_000051.3	2857	Gct/Tct																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343232	118343232	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	54	389	0	ENST00000534358.1:c.1361del	p.Pro454ArgfsTer113	p.P454Rfs*113	ENST00000534358	NM_005933.3	453	gCc/gc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343659	118343660	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	37	496	0	ENST00000534358.1:c.1790dup	p.Leu597PhefsTer22	p.L597Ffs*22	ENST00000534358	NM_005933.3	595	-/T																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344405	118344405	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	45	293	0	ENST00000534358.1:c.2531A>G	p.Gln844Arg	p.Q844R	ENST00000534358	NM_005933.3	844	cAg/cGg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118359383	118359383	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	46	456	0	ENST00000534358.1:c.4388del	p.Asn1463ThrfsTer123	p.N1463Tfs*123	ENST00000534358	NM_005933.3	1463	Aac/ac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373151	118373151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	65	402	1	ENST00000534358.1:c.6544G>A	p.Gly2182Ser	p.G2182S	ENST00000534358	NM_005933.3	2182	Ggt/Agt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374480	118374480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	70	454	0	ENST00000534358.1:c.7873C>T	p.Arg2625Cys	p.R2625C	ENST00000534358	NM_005933.3	2625	Cgt/Tgt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375790	118375790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	41	484	0	ENST00000534358.1:c.9183G>T	p.Gln3061His	p.Q3061H	ENST00000534358	NM_005933.3	3061	caG/caT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376607	118376607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	32	429	1	ENST00000534358.1:c.10000G>A	p.Val3334Met	p.V3334M	ENST00000534358	NM_005933.3	3334	Gtg/Atg																																																																															
CBL	867	MSKCC	GRCh37	11	119103402	119103402	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	42	321	0	ENST00000264033.4:c.440C>A	p.Pro147His	p.P147H	ENST00000264033	NM_005188.3	147	cCt/cAt																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125513732	125513732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	44	523	0	ENST00000428830.2:c.860C>T	p.Pro287Leu	p.P287L	ENST00000428830	NM_001114121.2	287	cCc/cTc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416632	416632	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	54	366	0	ENST00000399788.2:c.3918T>A	p.Asn1306Lys	p.N1306K	ENST00000399788	NM_001042603.1	1306	aaT/aaA																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416753	416753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	31	368	1	ENST00000399788.2:c.3797C>T	p.Thr1266Ile	p.T1266I	ENST00000399788	NM_001042603.1	1266	aCa/aTa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427457	427457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	73	684	0	ENST00000399788.2:c.2712G>T	p.Leu904Phe	p.L904F	ENST00000399788	NM_001042603.1	904	ttG/ttT																																																																															
KDM5A	5927	MSKCC	GRCh37	12	430161	430161	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	36	289	0	ENST00000399788.2:c.2541G>T	p.Lys847Asn	p.K847N	ENST00000399788	NM_001042603.1	847	aaG/aaT																																																																															
KDM5A	5927	MSKCC	GRCh37	12	438057	438057	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	42	489	0	ENST00000399788.2:c.1912G>T	p.Glu638Ter	p.E638*	ENST00000399788	NM_001042603.1	638	Gaa/Taa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	475167	475167	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	59	621	0	ENST00000399788.2:c.470T>C	p.Leu157Pro	p.L157P	ENST00000399788	NM_001042603.1	157	cTt/cCt																																																																															
CCND2	894	MSKCC	GRCh37	12	4383382	4383382	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	26	506	0	ENST00000261254.3:c.176T>C	p.Val59Ala	p.V59A	ENST00000261254	NM_001759.3	59	gTg/gCg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022904	12022904	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	41	662	0	ENST00000396373.4:c.1009+1G>T		p.X337_splice	ENST00000396373	NM_001987.4	337																																																																																
PIK3C2G	5288	MSKCC	GRCh37	12	18491482	18491482	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	41	329	0	ENST00000266497.5:c.1395G>T	p.Glu465Asp	p.E465D	ENST00000266497		465	gaG/gaT																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18499762	18499762	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	47	326	0	ENST00000266497.5:c.1617G>T	p.Trp539Cys	p.W539C	ENST00000266497		539	tgG/tgT																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641388	18641389	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	19	253	0	ENST00000266497.5:c.2393dup	p.Asn798LysfsTer5	p.N798Kfs*5	ENST00000266497		796	cta/ctAa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18650589	18650589	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	36	604	1	ENST00000266497.5:c.2800C>T	p.Gln934Ter	p.Q934*	ENST00000266497		934	Cag/Tag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18658389	18658390	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	30	396	1	ENST00000266497.5:c.3199dup	p.Arg1067LysfsTer38	p.R1067Kfs*38	ENST00000266497		1065	ata/atAa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18800873	18800873	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	45	470	0	ENST00000266497.5:c.4249A>G	p.Thr1417Ala	p.T1417A	ENST00000266497		1417	Act/Gct																																																																															
RECQL	5965	MSKCC	GRCh37	12	21636509	21636509	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	55	406	1	ENST00000421138.2:c.502-1G>T		p.X168_splice	ENST00000421138		168																																																																																
RECQL	5965	MSKCC	GRCh37	12	21644451	21644451	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	27	331	0	ENST00000421138.2:c.214+2T>C		p.X72_splice	ENST00000421138		72																																																																																
H3F3C	440093	MSKCC	GRCh37	12	31945067	31945067	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	34	662	0	ENST00000340398.3:c.34A>G	p.Thr12Ala	p.T12A	ENST00000340398	NM_001013699.2	12	Acc/Gcc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244335	46244335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	48	489	0	ENST00000334344.6:c.2429C>T	p.Ala810Val	p.A810V	ENST00000334344	NM_152641.2	810	gCa/gTa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245312	46245312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	36	488	0	ENST00000334344.6:c.3406C>T	p.Pro1136Ser	p.P1136S	ENST00000334344	NM_152641.2	1136	Ccc/Tcc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285562	46285562	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs79280775		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	31	283	1	ENST00000334344.6:c.4923-1G>T		p.X1641_splice	ENST00000334344	NM_152641.2	1641																																																																																
ARID2	196528	MSKCC	GRCh37	12	46298803	46298803	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	27	389	0	ENST00000334344.6:c.5451del	p.Glu1817AspfsTer22	p.E1817Dfs*22	ENST00000334344	NM_152641.2	1817	gAa/ga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49415828	49415828	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	40	432	0	ENST00000301067.7:c.16519G>A	p.Glu5507Lys	p.E5507K	ENST00000301067	NM_003482.3	5507	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416416	49416416	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs398123734		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	49	643	1	ENST00000301067.7:c.16295G>A	p.Arg5432Gln	p.R5432Q	ENST00000301067	NM_003482.3	5432	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49422666	49422666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	35	671	4	ENST00000301067.7:c.14327A>G	p.Lys4776Arg	p.K4776R	ENST00000301067	NM_003482.3	4776	aAg/aGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49422961	49422961	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	32	662	0	ENST00000301067.7:c.14134G>T	p.Glu4712Ter	p.E4712*	ENST00000301067	NM_003482.3	4712	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427974	49427974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	76	703	1	ENST00000301067.7:c.10616G>A	p.Arg3539Gln	p.R3539Q	ENST00000301067	NM_003482.3	3539	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431726	49431726	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	43	675	0	ENST00000301067.7:c.9413C>A	p.Thr3138Asn	p.T3138N	ENST00000301067	NM_003482.3	3138	aCc/aAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431947	49431947	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	88	815	0	ENST00000301067.7:c.9192T>A	p.Asp3064Glu	p.D3064E	ENST00000301067	NM_003482.3	3064	gaT/gaA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434384	49434384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	34	635	0	ENST00000301067.7:c.7169C>T	p.Pro2390Leu	p.P2390L	ENST00000301067	NM_003482.3	2390	cCg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49442994	49442994	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	33	483	0	ENST00000301067.7:c.3914G>T	p.Ser1305Ile	p.S1305I	ENST00000301067	NM_003482.3	1305	aGc/aTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445168	49445168	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	41	646	1	ENST00000301067.7:c.2298G>T	p.Glu766Asp	p.E766D	ENST00000301067	NM_003482.3	766	gaG/gaT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445430	49445430	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	81	811	3	ENST00000301067.7:c.2036C>A	p.Pro679His	p.P679H	ENST00000301067	NM_003482.3	679	cCc/cAc																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50482318	50482318	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	69	450	0	ENST00000394963.4:c.669A>C	p.Lys223Asn	p.K223N	ENST00000394963	NM_003076.4	223	aaA/aaC																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861199	57861199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	54	484	0	ENST00000228682.2:c.996G>A	p.Met332Ile	p.M332I	ENST00000228682	NM_005269.2	332	atG/atA																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864144	57864144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	41	569	1	ENST00000228682.2:c.1621C>T	p.Arg541Cys	p.R541C	ENST00000228682	NM_005269.2	541	Cgc/Tgc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864571	57864571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	36	678	0	ENST00000228682.2:c.2048C>A	p.Ser683Tyr	p.S683Y	ENST00000228682	NM_005269.2	683	tCt/tAt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865140	57865140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	33	792	0	ENST00000228682.2:c.2617C>A	p.Leu873Ile	p.L873I	ENST00000228682	NM_005269.2	873	Ctt/Att																																																																															
MDM2	4193	MSKCC	GRCh37	12	69222592	69222592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	50	467	1	ENST00000462284.1:c.565C>T	p.Arg189Cys	p.R189C	ENST00000462284	NM_002392.5	189	Cgc/Tgc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112884148	112884149	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	39	475	0	ENST00000351677.2:c.89dup	p.Leu30PhefsTer5	p.L30Ffs*5	ENST00000351677	NM_002834.3	28	agt/agTt																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112924348	112924348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	39	552	0	ENST00000351677.2:c.1294C>A	p.Pro432Thr	p.P432T	ENST00000351677	NM_002834.3	432	Cct/Act																																																																															
MSI1	4440	MSKCC	GRCh37	12	120791129	120791129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	56	590	1	ENST00000257552.2:c.706G>A	p.Ala236Thr	p.A236T	ENST00000257552	NM_002442.3	236	Gcc/Acc																																																																															
POLE	5426	MSKCC	GRCh37	12	133202894	133202894	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	31	500	0	ENST00000320574.5:c.6340del	p.Leu2114TrpfsTer9	p.L2114Wfs*9	ENST00000320574	NM_006231.2	2114	Ctg/tg																																																																															
POLE	5426	MSKCC	GRCh37	12	133212559	133212559	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	38	556	2	ENST00000320574.5:c.5730C>A	p.Cys1910Ter	p.C1910*	ENST00000320574	NM_006231.2	1910	tgC/tgA																																																																															
POLE	5426	MSKCC	GRCh37	12	133235963	133235963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	98	595	0	ENST00000320574.5:c.3193G>A	p.Gly1065Arg	p.G1065R	ENST00000320574	NM_006231.2	1065	Gga/Aga																																																																															
POLE	5426	MSKCC	GRCh37	12	133237677	133237677	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	33	679	0	ENST00000320574.5:c.2938C>T	p.Gln980Ter	p.Q980*	ENST00000320574	NM_006231.2	980	Cag/Tag																																																																															
POLE	5426	MSKCC	GRCh37	12	133257866	133257866	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	49	411	0	ENST00000320574.5:c.63-1G>T		p.X21_splice	ENST00000320574	NM_006231.2	21																																																																																
LATS2	26524	MSKCC	GRCh37	13	21549492	21549492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	47	462	0	ENST00000382592.4:c.2784G>A	p.Trp928Ter	p.W928*	ENST00000382592	NM_014572.2	928	tgG/tgA																																																																															
LATS2	26524	MSKCC	GRCh37	13	21553937	21553937	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	24	382	1	ENST00000382592.4:c.2666-1G>T		p.X889_splice	ENST00000382592	NM_014572.2	889																																																																																
LATS2	26524	MSKCC	GRCh37	13	21562886	21562886	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	33	669	0	ENST00000382592.4:c.1033C>T	p.Gln345Ter	p.Q345*	ENST00000382592	NM_014572.2	345	Cag/Tag																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563002	21563002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	41	673	0	ENST00000382592.4:c.917C>T	p.Pro306Leu	p.P306L	ENST00000382592	NM_014572.2	306	cCc/cTc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28611372	28611372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	40	607	1	ENST00000241453.7:c.1259C>T	p.Ala420Val	p.A420V	ENST00000241453	NM_004119.2	420	gCa/gTa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28893590	28893590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	47	441	0	ENST00000282397.4:c.3256G>A	p.Gly1086Arg	p.G1086R	ENST00000282397	NM_002019.4	1086	Gga/Aga																																																																															
FLT1	2321	MSKCC	GRCh37	13	29005345	29005345	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	97	674	0	ENST00000282397.4:c.916A>G	p.Lys306Glu	p.K306E	ENST00000282397	NM_002019.4	306	Aaa/Gaa																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008291	29008291	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	49	465	0	ENST00000282397.4:c.580A>G	p.Ile194Val	p.I194V	ENST00000282397	NM_002019.4	194	Ata/Gta																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041755	29041755	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	33	403	0	ENST00000282397.4:c.65-1G>T		p.X22_splice	ENST00000282397	NM_002019.4	22																																																																																
BRCA2	675	MSKCC	GRCh37	13	32906858	32906858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	80	507	0	ENST00000380152.3:c.1243C>T	p.His415Tyr	p.H415Y	ENST00000380152		415	Cat/Tat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912902	32912902	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	37	383	0	ENST00000380152.3:c.4410A>G	p.Ile1470Met	p.I1470M	ENST00000380152		1470	atA/atG																																																																															
BRCA2	675	MSKCC	GRCh37	13	32930564	32930564	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	28	267	1	ENST00000380152.3:c.7436-1G>T		p.X2479_splice	ENST00000380152		2479																																																																																
FOXO1	2308	MSKCC	GRCh37	13	41133674	41133674	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	35	354	0	ENST00000379561.5:c.1954T>C	p.Trp652Arg	p.W652R	ENST00000379561	NM_002015.3	652	Tgg/Cgg																																																																															
RB1	5925	MSKCC	GRCh37	13	48881430	48881430	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	63	196	0	ENST00000267163.4:c.152A>G	p.Glu51Gly	p.E51G	ENST00000267163	NM_000321.2	51	gAa/gGa																																																																															
RB1	5925	MSKCC	GRCh37	13	49050919	49050919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	33	390	0	ENST00000267163.4:c.2603C>A	p.Pro868His	p.P868H	ENST00000267163	NM_000321.2	868	cCt/cAt																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281734	49281734	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	64	775	0	ENST00000282018.3:c.781C>A	p.Leu261Met	p.L261M	ENST00000282018	NM_020377.2	261	Ctg/Atg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337683	73337684	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	29	343	1	ENST00000377767.4:c.2032dupA	p.Ile678AsnfsTer3	p.I678Nfs*3	ENST00000377767	NM_014953.3	678	att/aAtt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103513867	103513867	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	36	318	0	ENST00000355739.4:c.683A>T	p.Asp228Val	p.D228V	ENST00000355739	NM_000123.3	228	gAc/gTc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103519075	103519075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	35	567	1	ENST00000355739.4:c.2413G>A	p.Gly805Arg	p.G805R	ENST00000355739	NM_000123.3	805	Gga/Aga																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435868	110435868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	18	519	0	ENST00000375856.3:c.2533C>T	p.Pro845Ser	p.P845S	ENST00000375856	NM_003749.2	845	Cca/Tca																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436077	110436077	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	30	716	0	ENST00000375856.3:c.2324T>A	p.Val775Asp	p.V775D	ENST00000375856	NM_003749.2	775	gTc/gAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436207	110436207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	24	484	0	ENST00000375856.3:c.2194C>T	p.Pro732Ser	p.P732S	ENST00000375856	NM_003749.2	732	Ccc/Tcc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107707	30107707	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	46	626	0	ENST00000331968.5:c.973A>G	p.Thr325Ala	p.T325A	ENST00000331968	NM_002742.2	325	Acc/Gcc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987211	36987211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	40	593	0	ENST00000354822.5:c.478G>A	p.Gly160Ser	p.G160S	ENST00000354822	NM_001079668.2	160	Ggc/Agc																																																																															
RAD51	5888	MSKCC	GRCh37	15	40993319	40993319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	32	462	0	ENST00000267868.3:c.145G>A	p.Val49Met	p.V49M	ENST00000267868	NM_002875.4	49	Gtg/Atg																																																																															
MGA	23269	MSKCC	GRCh37	15	41989076	41989076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	49	504	0	ENST00000219905.7:c.1868G>A	p.Cys623Tyr	p.C623Y	ENST00000219905	NM_001164273.1	623	tGt/tAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42034852	42034852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	48	532	0	ENST00000219905.7:c.4694C>T	p.Thr1565Ile	p.T1565I	ENST00000219905	NM_001164273.1	1565	aCa/aTa																																																																															
MGA	23269	MSKCC	GRCh37	15	42040877	42040877	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	49	554	0	ENST00000219905.7:c.5255C>A	p.Pro1752His	p.P1752H	ENST00000219905	NM_001164273.1	1752	cCt/cAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42041692	42041692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	49	515	0	ENST00000219905.7:c.5887G>A	p.Val1963Ile	p.V1963I	ENST00000219905	NM_001164273.1	1963	Gtt/Att																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43720315	43720315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	111	692	0	ENST00000382044.4:c.3727C>A	p.Arg1243Ser	p.R1243S	ENST00000382044	NM_001141980.1	1243	Cgt/Agt																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628267	90628267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	34	755	0	ENST00000330062.3:c.1144C>T	p.Arg382Trp	p.R382W	ENST00000330062	NM_002168.2	382	Cgg/Tgg																																																																															
BLM	641	MSKCC	GRCh37	15	91298098	91298098	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	37	365	0	ENST00000355112.3:c.1017A>C	p.Lys339Asn	p.K339N	ENST00000355112	NM_000057.2	339	aaA/aaC																																																																															
BLM	641	MSKCC	GRCh37	15	91326139	91326139	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	37	369	0	ENST00000355112.3:c.2643G>A	p.Trp881Ter	p.W881*	ENST00000355112	NM_000057.2	881	tgG/tgA																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467863	99467863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	28	365	0	ENST00000268035.6:c.2732C>T	p.Ser911Phe	p.S911F	ENST00000268035	NM_000875.3	911	tCt/tTt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500382	99500382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	36	634	0	ENST00000268035.6:c.3815C>A	p.Pro1272His	p.P1272H	ENST00000268035	NM_000875.3	1272	cCt/cAt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500577	99500577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	32	458	0	ENST00000268035.6:c.4010G>T	p.Arg1337Leu	p.R1337L	ENST00000268035	NM_000875.3	1337	cGc/cTc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2122868	2122868	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	35	570	0	ENST00000219476.3:c.2239C>A	p.Leu747Met	p.L747M	ENST00000219476	NM_000548.3	747	Ctg/Atg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2124319	2124319	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	39	814	0	ENST00000219476.3:c.2474T>A	p.Val825Asp	p.V825D	ENST00000219476	NM_000548.3	825	gTt/gAt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2130340	2130340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	53	626	0	ENST00000219476.3:c.3572C>T	p.Thr1191Ile	p.T1191I	ENST00000219476	NM_000548.3	1191	aCc/aTc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2218117	2218117	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	46	747	0	ENST00000326181.6:c.179C>A	p.Pro60His	p.P60H	ENST00000326181	NM_032271.2	60	cCc/cAc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225386	2225386	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139483392		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	49	675	0	ENST00000326181.6:c.1471G>A	p.Val491Met	p.V491M	ENST00000326181	NM_032271.2	491	Gtg/Atg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639380	3639380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	38	688	1	ENST00000294008.3:c.4259C>T	p.Pro1420Leu	p.P1420L	ENST00000294008	NM_032444.2	1420	cCa/cTa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857296	9857296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	31	559	0	ENST00000330684.3:c.4105C>T	p.His1369Tyr	p.H1369Y	ENST00000330684	NM_001134407.1	1369	Cac/Tac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032171	10032171	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	50	750	0	ENST00000330684.3:c.652C>T	p.Gln218Ter	p.Q218*	ENST00000330684	NM_001134407.1	218	Cag/Tag																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14015887	14015887	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	31	242	0	ENST00000311895.7:c.208-1G>T		p.X70_splice	ENST00000311895	NM_005236.2	70																																																																																
ERCC4	2072	MSKCC	GRCh37	16	14038621	14038621	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	32	346	0	ENST00000311895.7:c.1946G>T	p.Arg649Ile	p.R649I	ENST00000311895	NM_005236.2	649	aGa/aTa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641344	23641344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	42	712	0	ENST00000261584.4:c.2131G>A	p.Val711Ile	p.V711I	ENST00000261584	NM_024675.3	711	Gtt/Att																																																																															
CYLD	1540	MSKCC	GRCh37	16	50828297	50828297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	105	523	0	ENST00000398568.2:c.2635G>A	p.Asp879Asn	p.D879N	ENST00000398568	NM_001042412.1	879	Gat/Aat																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	30	374	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
CTCF	10664	MSKCC	GRCh37	16	67655395	67655395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	44	558	0	ENST00000264010.4:c.1258G>A	p.Gly420Ser	p.G420S	ENST00000264010	NM_006565.3	420	Ggt/Agt																																																																															
CDH1	999	MSKCC	GRCh37	16	68835660	68835660	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	45	627	0	ENST00000261769.5:c.251C>A	p.Thr84Lys	p.T84K	ENST00000261769	NM_004360.3	84	aCa/aAa																																																																															
CDH1	999	MSKCC	GRCh37	16	68867295	68867295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	100	537	0	ENST00000261769.5:c.2542C>A	p.Leu848Met	p.L848M	ENST00000261769	NM_004360.3	848	Ctg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822557	72822557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	26	511	0	ENST00000268489.5:c.9618G>T	p.Gln3206His	p.Q3206H	ENST00000268489	NM_006885.3	3206	caG/caT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827427	72827428	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	47	710	0	ENST00000268489.5:c.9153dup	p.Val3052SerfsTer2	p.V3052Sfs*2	ENST00000268489	NM_006885.3	3051	-/A																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831172	72831172	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	37	559	0	ENST00000268489.5:c.5409del	p.Ser1804ValfsTer10	p.S1804Vfs*10	ENST00000268489	NM_006885.3	1803	ccC/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984430	72984430	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	41	678	2	ENST00000268489.5:c.3154C>A	p.Leu1052Met	p.L1052M	ENST00000268489	NM_006885.3	1052	Ctg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991503	72991503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	46	829	0	ENST00000268489.5:c.2542C>A	p.Leu848Met	p.L848M	ENST00000268489	NM_006885.3	848	Ctg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991698	72991698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	38	482	0	ENST00000268489.5:c.2347G>A	p.Ala783Thr	p.A783T	ENST00000268489	NM_006885.3	783	Gca/Aca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992417	72992417	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	53	858	0	ENST00000268489.5:c.1628T>C	p.Leu543Pro	p.L543P	ENST00000268489	NM_006885.3	543	cTg/cCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993872	72993872	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	38	512	0	ENST00000268489.5:c.173A>T	p.Asn58Ile	p.N58I	ENST00000268489	NM_006885.3	58	aAt/aTt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81925195	81925195	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	64	483	0	ENST00000359376.3:c.986C>T	p.Thr329Met	p.T329M	ENST00000359376	NM_002661.3	329	aCg/aTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953145	81953145	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	48	388	0	ENST00000359376.3:c.2111T>C	p.Leu704Pro	p.L704P	ENST00000359376	NM_002661.3	704	cTg/cCg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81960686	81960686	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	22	410	0	ENST00000359376.3:c.2418-1G>A		p.X806_splice	ENST00000359376	NM_002661.3	806																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81971483	81971483	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	50	424	0	ENST00000359376.3:c.3173A>T	p.Lys1058Met	p.K1058M	ENST00000359376	NM_002661.3	1058	aAg/aTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346777	89346777	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	28	395	0	ENST00000301030.4:c.6173C>A	p.Pro2058His	p.P2058H	ENST00000301030	NM_001256183.1	2058	cCt/cAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348038	89348038	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs113527563		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	44	966	0	ENST00000301030.4:c.4912C>G	p.Pro1638Ala	p.P1638A	ENST00000301030	NM_001256183.1	1638	Cct/Gct																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350431	89350431	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149776253		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	54	818	1	ENST00000301030.4:c.2519G>A	p.Arg840Gln	p.R840Q	ENST00000301030	NM_001256183.1	840	cGg/cAg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89815123	89815123	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	81	550	0	ENST00000389301.3:c.3292G>T	p.Glu1098Ter	p.E1098*	ENST00000389301	NM_000135.2	1098	Gaa/Taa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89831311	89831311	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	50	542	0	ENST00000389301.3:c.2765A>G	p.Glu922Gly	p.E922G	ENST00000389301	NM_000135.2	922	gAg/gGg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89838103	89838103	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	85	574	0	ENST00000389301.3:c.2134G>T	p.Glu712Ter	p.E712*	ENST00000389301	NM_000135.2	712	Gag/Tag																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217667	7217667	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	43	552	1	ENST00000380728.2:c.260del	p.Phe87SerfsTer22	p.F87Sfs*22	ENST00000380728		87	tTc/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	79	512	0	ENST00000269305.4:c.800G>A	p.Arg267Gln	p.R267Q	ENST00000269305	NM_001126112.2	267	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	27	444	0	ENST00000269305.4:c.783-1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs878854073		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	36	532	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
ALOX12B	242	MSKCC	GRCh37	17	7984293	7984293	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	29	556	1	ENST00000319144.4:c.436T>C	p.Trp146Arg	p.W146R	ENST00000319144	NM_001139.2	146	Tgg/Cgg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108250	8108250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	107	568	0	ENST00000585124.1:c.974C>T	p.Pro325Leu	p.P325L	ENST00000585124	NM_004217.3	325	cCt/cTt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15960997	15960997	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	90	440	1	ENST00000268712.3:c.6223C>T	p.Gln2075Ter	p.Q2075*	ENST00000268712	NM_006311.3	2075	Cag/Tag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15973493	15973493	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	81	368	0	ENST00000268712.3:c.4499A>G	p.Asn1500Ser	p.N1500S	ENST00000268712	NM_006311.3	1500	aAc/aGc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15973623	15973624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	45	468	1	ENST00000268712.3:c.4368_4369insA	p.Ser1457IlefsTer4	p.S1457Ifs*4	ENST00000268712	NM_006311.3	1456	-/A																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	98	541	2	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	53	445	9	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
NF1	4763	MSKCC	GRCh37	17	29556280	29556280	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	49	587	0	ENST00000358273.4:c.2647T>C	p.Ser883Pro	p.S883P	ENST00000358273	NM_001042492.2	883	Tca/Cca																																																																															
NF1	4763	MSKCC	GRCh37	17	29663652	29663652	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	32	435	0	ENST00000358273.4:c.6148-1G>T		p.X2050_splice	ENST00000358273	NM_001042492.2	2050																																																																																
CDK12	51755	MSKCC	GRCh37	17	37618483	37618483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	43	480	0	ENST00000447079.4:c.159G>A	p.Met53Ile	p.M53I	ENST00000447079	NM_015083.1	53	atG/atA																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619260	37619260	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	29	395	0	ENST00000447079.4:c.936C>A	p.Ser312Arg	p.S312R	ENST00000447079	NM_015083.1	312	agC/agA																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627730	37627730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	53	730	0	ENST00000447079.4:c.1645C>T	p.Pro549Ser	p.P549S	ENST00000447079	NM_015083.1	549	Ccc/Tcc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650924	37650924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	42	469	0	ENST00000447079.4:c.2396C>T	p.Ala799Val	p.A799V	ENST00000447079	NM_015083.1	799	gCa/gTa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37856539	37856540	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	32	354	0	ENST00000269571.5:c.54dup	p.Gly19ArgfsTer91	p.G19Rfs*91	ENST00000269571		16	-/C																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40359576	40359576	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	87	500	0	ENST00000293328.3:c.2077G>A	p.Ala693Thr	p.A693T	ENST00000293328	NM_012448.3	693	Gct/Act																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40443988	40443988	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	59	508	0	ENST00000345506.4:c.286-2A>G		p.X96_splice	ENST00000345506	NM_003152.3	96																																																																																
BRCA1	672	MSKCC	GRCh37	17	41243487	41243487	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	55	658	0	ENST00000357654.3:c.4061A>T	p.Asn1354Ile	p.N1354I	ENST00000357654	NM_007294.3	1354	aAt/aTt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243932	41243932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	101	649	1	ENST00000357654.3:c.3616G>A	p.Ala1206Thr	p.A1206T	ENST00000357654	NM_007294.3	1206	Gcc/Acc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244818	41244818	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	105	782	0	ENST00000357654.3:c.2730del	p.Gly911GlufsTer89	p.G911Efs*89	ENST00000357654	NM_007294.3	910	caA/ca																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245087	41245087	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	52	826	0	ENST00000357654.3:c.2461G>T	p.Asp821Tyr	p.D821Y	ENST00000357654	NM_007294.3	821	Gat/Tat																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246282	41246282	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	47	609	0	ENST00000357654.3:c.1266T>A	p.Tyr422Ter	p.Y422*	ENST00000357654	NM_007294.3	422	taT/taA																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	56	621	0	ENST00000407977.2:c.349C>T	p.Arg117Cys	p.R117C	ENST00000407977		117	Cgc/Tgc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740629	58740629	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	39	579	0	ENST00000305921.3:c.1534A>C	p.Asn512His	p.N512H	ENST00000305921	NM_003620.3	512	Aat/Cat																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760660	59760660	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	57	524	0	ENST00000259008.2:c.3747G>T	p.Lys1249Asn	p.K1249N	ENST00000259008	NM_032043.2	1249	aaG/aaT																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59926535	59926535	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	35	651	0	ENST00000259008.2:c.462del	p.Gln155LysfsTer2	p.Q155Kfs*2	ENST00000259008	NM_032043.2	154	ttT/tt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59934491	59934491	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	50	542	0	ENST00000259008.2:c.307G>T	p.Gly103Ter	p.G103*	ENST00000259008	NM_032043.2	103	Gga/Tga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530029	63530029	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	59	443	0	ENST00000307078.5:c.2405+1G>A		p.X802_splice	ENST00000307078	NM_004655.3	802																																																																																
PRKAR1A	5573	MSKCC	GRCh37	17	66522016	66522016	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	35	271	0	ENST00000358598.2:c.671G>A	p.Trp224Ter	p.W224*	ENST00000358598	NM_212471.2	224	tGg/tAg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78796094	78796094	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	30	435	1	ENST00000306801.3:c.988del	p.Arg330GlyfsTer28	p.R330Gfs*28	ENST00000306801	NM_020761.2	328	ctC/ct																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78899281	78899281	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	42	486	1	ENST00000306801.3:c.2919+1G>A		p.X973_splice	ENST00000306801	NM_020761.2	973																																																																																
YES1	7525	MSKCC	GRCh37	18	743290	743290	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	41	605	0	ENST00000314574.4:c.850G>T	p.Gly284Ter	p.G284*	ENST00000314574	NM_005433.3	284	Gga/Tga																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39620668	39620668	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	92	473	0	ENST00000262039.4:c.2066C>A	p.Pro689His	p.P689H	ENST00000262039	NM_002647.2	689	cCt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584806	48584806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	34	418	0	ENST00000342988.3:c.884C>T	p.Pro295Leu	p.P295L	ENST00000342988	NM_005359.5	295	cCg/cTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	43	541	0	ENST00000342988.3:c.1067C>A	p.Pro356His	p.P356H	ENST00000342988	NM_005359.5	356	cCt/cAt																																																																															
BCL2	596	MSKCC	GRCh37	18	60985722	60985722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	18	193	1	ENST00000333681.4:c.178G>A	p.Ala60Thr	p.A60T	ENST00000333681		60	Gcc/Acc																																																																															
STK11	6794	MSKCC	GRCh37	19	1226606	1226606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	53	448	0	ENST00000326873.7:c.1262G>A	p.Ser421Asn	p.S421N	ENST00000326873	NM_000455.4	421	aGc/aAc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2194560	2194560	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	71	429	0	ENST00000398665.3:c.635A>C	p.Lys212Thr	p.K212T	ENST00000398665	NM_032482.2	212	aAg/aCg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211173	2211173	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	32	735	0	ENST00000398665.3:c.1427T>C	p.Leu476Pro	p.L476P	ENST00000398665	NM_032482.2	476	cTg/cCg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222254	2222254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	46	726	0	ENST00000398665.3:c.3086C>A	p.Pro1029His	p.P1029H	ENST00000398665	NM_032482.2	1029	cCc/cAc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2223375	2223376	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	40	598	0	ENST00000398665.3:c.3492dup	p.Val1165ArgfsTer28	p.V1165Rfs*28	ENST00000398665	NM_032482.2	1162	-/C																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110315	3110315	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	67	531	0	ENST00000078429.4:c.305A>G	p.Lys102Arg	p.K102R	ENST00000078429	NM_002067.2	102	aAg/aGg																																																																															
GNA11	2767	MSKCC	GRCh37	19	3121089	3121089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	38	672	1	ENST00000078429.4:c.992C>T	p.Ala331Val	p.A331V	ENST00000078429	NM_002067.2	331	gCc/gTc																																																																															
INSR	3643	MSKCC	GRCh37	19	7267754	7267754	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	61	612	0	ENST00000302850.5:c.254C>A	p.Thr85Asn	p.T85N	ENST00000302850	NM_000208.2	85	aCt/aAt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10248552	10248552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	34	671	1	ENST00000340748.4:c.4201C>T	p.Arg1401Trp	p.R1401W	ENST00000340748		1401	Cgg/Tgg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265406	10265406	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	48	643	0	ENST00000340748.4:c.1640A>T	p.Glu547Val	p.E547V	ENST00000340748		547	gAg/gTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10305521	10305521	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	17	496	0	ENST00000340748.4:c.55T>C	p.Ser19Pro	p.S19P	ENST00000340748		19	Tcg/Ccg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610243	10610243	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	64	719	0	ENST00000171111.5:c.467T>C	p.Met156Thr	p.M156T	ENST00000171111	NM_203500.1	156	aTg/aCg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11018721	11018721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	51	625	0	ENST00000327064.4:c.353G>A	p.Cys118Tyr	p.C118Y	ENST00000327064	NM_199141.1	118	tGt/tAt																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031222	11031222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	40	663	0	ENST00000327064.4:c.1307G>A	p.Gly436Glu	p.G436E	ENST00000327064	NM_199141.1	436	gGg/gAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11113714	11113714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	38	498	0	ENST00000344626.4:c.1822G>A	p.Glu608Lys	p.E608K	ENST00000344626	NM_003072.3	608	Gag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11168942	11168942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	49	420	0	ENST00000344626.4:c.4436G>A	p.Arg1479His	p.R1479H	ENST00000344626	NM_003072.3	1479	cGt/cAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170480	11170480	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	35	622	0	ENST00000344626.4:c.4690del	p.Ile1564SerfsTer32	p.I1564Sfs*32	ENST00000344626	NM_003072.3	1563	Aaa/aa																																																																															
CALR	811	MSKCC	GRCh37	19	13050961	13050961	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	44	478	2	ENST00000316448.5:c.492G>T	p.Lys164Asn	p.K164N	ENST00000316448	NM_004343.3	164	aaG/aaT																																																																															
CALR	811	MSKCC	GRCh37	19	13054352	13054352	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	62	483	0	ENST00000316448.5:c.962T>C	p.Val321Ala	p.V321A	ENST00000316448	NM_004343.3	321	gTc/gCc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376268	15376268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	32	581	0	ENST00000263377.2:c.746C>T	p.Thr249Met	p.T249M	ENST00000263377	NM_058243.2	249	aCg/aTg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17389660	17389660	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	65	511	0	ENST00000359435.4:c.793T>G	p.Phe265Val	p.F265V	ENST00000359435	NM_001033549.1	265	Ttt/Gtt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17951077	17951077	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	25	570	0	ENST00000458235.1:c.1216C>T	p.Gln406Ter	p.Q406*	ENST00000458235	NM_000215.3	406	Cag/Tag																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273092	18273092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	40	564	0	ENST00000222254.8:c.982G>A	p.Ala328Thr	p.A328T	ENST00000222254	NM_005027.3	328	Gct/Act																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279284	18279284	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	28	415	0	ENST00000222254.8:c.1737-1G>T		p.X579_splice	ENST00000222254	NM_005027.3	579																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36212521	36212521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	32	792	0	ENST00000222270.7:c.2272C>T	p.Pro758Ser	p.P758S	ENST00000222270	NM_014727.1	758	Cca/Tca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212537	36212537	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	37	805	0	ENST00000222270.7:c.2288C>A	p.Pro763Gln	p.P763Q	ENST00000222270	NM_014727.1	763	cCg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213573	36213573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	98	865	0	ENST00000222270.7:c.2675G>A	p.Arg892His	p.R892H	ENST00000222270	NM_014727.1	892	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222811	36222811	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	36	648	0	ENST00000222270.7:c.5444del	p.Pro1815GlnfsTer80	p.P1815Qfs*80	ENST00000222270	NM_014727.1	1814	Ccc/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223962	36223962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	36	791	1	ENST00000222270.7:c.6512G>T	p.Gly2171Val	p.G2171V	ENST00000222270	NM_014727.1	2171	gGg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224039	36224039	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	46	809	0	ENST00000222270.7:c.6589C>A	p.Leu2197Met	p.L2197M	ENST00000222270	NM_014727.1	2197	Ctg/Atg																																																																															
AKT2	208	MSKCC	GRCh37	19	40748585	40748585	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	33	541	0	ENST00000392038.2:c.297G>A	p.Trp99Ter	p.W99*	ENST00000392038	NM_001626.4	99	tgG/tgA																																																																															
AXL	558	MSKCC	GRCh37	19	41736887	41736887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	34	642	0	ENST00000301178.4:c.602C>T	p.Ser201Phe	p.S201F	ENST00000301178	NM_021913.4	201	tCc/tTc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383075	42383075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	52	363	2	ENST00000221972.3:c.95C>T	p.Ala32Val	p.A32V	ENST00000221972	NM_021601.3	32	gCc/gTc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383153	42383153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	42	633	0	ENST00000221972.3:c.173G>T	p.Ser58Ile	p.S58I	ENST00000221972	NM_021601.3	58	aGc/aTc																																																																															
CIC	23152	MSKCC	GRCh37	19	42795269	42795269	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	51	638	0	ENST00000575354.2:c.2349G>T	p.Gln783His	p.Q783H	ENST00000575354	NM_015125.3	783	caG/caT																																																																															
CIC	23152	MSKCC	GRCh37	19	42795886	42795886	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	97	749	0	ENST00000575354.2:c.2880del	p.Ser961AlafsTer6	p.S961Afs*6	ENST00000575354	NM_015125.3	959	Ccc/cc																																																																															
CIC	23152	MSKCC	GRCh37	19	42798348	42798348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	37	647	0	ENST00000575354.2:c.4219C>T	p.Pro1407Ser	p.P1407S	ENST00000575354	NM_015125.3	1407	Ccc/Tcc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45858035	45858035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	97	656	0	ENST00000391945.4:c.1618A>G	p.Thr540Ala	p.T540A	ENST00000391945	NM_000400.3	540	Acc/Gcc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867068	45867068	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	30	569	1	ENST00000391945.4:c.1051C>T	p.Gln351Ter	p.Q351*	ENST00000391945	NM_000400.3	351	Cag/Tag																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902244	50902244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	58	743	0	ENST00000440232.2:c.136G>A	p.Ala46Thr	p.A46T	ENST00000440232	NM_002691.3	46	Gca/Aca																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905055	50905055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	30	527	0	ENST00000440232.2:c.337G>A	p.Gly113Arg	p.G113R	ENST00000440232	NM_002691.3	113	Ggg/Agg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909713	50909713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	83	788	0	ENST00000440232.2:c.1433G>A	p.Ser478Asn	p.S478N	ENST00000440232	NM_002691.3	478	aGc/aAc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52709251	52709252	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	42	486	0	ENST00000322088.6:c.205_206insA	p.Leu69HisfsTer55	p.L69Hfs*55	ENST00000322088	NM_014225.5	69	ctg/cAtg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52709254	52709254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	36	475	2	ENST00000322088.6:c.208G>T	p.Ala70Ser	p.A70S	ENST00000322088	NM_014225.5	70	Gca/Tca																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464544	25464544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	37	648	0	ENST00000264709.3:c.1969G>A	p.Val657Met	p.V657M	ENST00000264709	NM_175629.2	657	Gtg/Atg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467446	25467446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	39	624	0	ENST00000264709.3:c.1630C>T	p.Arg544Cys	p.R544C	ENST00000264709	NM_175629.2	544	Cgt/Tgt																																																																															
ALK	238	MSKCC	GRCh37	2	29451823	29451823	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	61	595	1	ENST00000389048.3:c.2742del	p.Trp915GlyfsTer24	p.W915Gfs*24	ENST00000389048	NM_004304.4	914	ggG/gg																																																																															
ALK	238	MSKCC	GRCh37	2	29541264	29541264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	48	359	0	ENST00000389048.3:c.1553C>T	p.Ala518Val	p.A518V	ENST00000389048	NM_004304.4	518	gCt/gTt																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46602874	46602874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	53	662	0	ENST00000263734.3:c.932C>T	p.Ala311Val	p.A311V	ENST00000263734	NM_001430.4	311	gCa/gTa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026708	48026708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	51	421	0	ENST00000234420.5:c.1586G>A	p.Gly529Asp	p.G529D	ENST00000234420	NM_000179.2	529	gGt/gAt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	100	508	12	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																															
REL	5966	MSKCC	GRCh37	2	61145714	61145714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	40	380	0	ENST00000295025.8:c.826G>A	p.Asp276Asn	p.D276N	ENST00000295025	NM_002908.2	276	Gat/Aat																																																																															
XPO1	7514	MSKCC	GRCh37	2	61711149	61711149	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	46	471	0	ENST00000401558.2:c.2600C>A	p.Pro867Gln	p.P867Q	ENST00000401558	NM_003400.3	867	cCa/cAa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61722619	61722619	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	70	371	0	ENST00000401558.2:c.1018del	p.Arg340AspfsTer2	p.R340Dfs*2	ENST00000401558	NM_003400.3	340	Aga/ga																																																																															
XPO1	7514	MSKCC	GRCh37	2	61760939	61760939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	53	537	0	ENST00000401558.2:c.94G>A	p.Val32Met	p.V32M	ENST00000401558	NM_003400.3	32	Gtg/Atg																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919560	96919560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	41	519	0	ENST00000258439.3:c.703G>A	p.Ala235Thr	p.A235T	ENST00000258439	NM_001193304.2	235	Gct/Act																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881498	111881498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	38	510	0	ENST00000393256.3:c.176G>A	p.Ser59Asn	p.S59N	ENST00000393256	NM_006538.4	59	aGc/aAc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158617532	158617532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	60	467	0	ENST00000263640.3:c.1124G>A	p.Arg375His	p.R375H	ENST00000263640	NM_001105.4	375	cGt/cAt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095797	178095797	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	53	588	0	ENST00000397062.3:c.1534C>T	p.Gln512Ter	p.Q512*	ENST00000397062	NM_006164.4	512	Cag/Tag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096543	178096543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	28	404	0	ENST00000397062.3:c.788C>T	p.Pro263Leu	p.P263L	ENST00000397062	NM_006164.4	263	cCc/cTc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190670376	190670376	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	42	366	0	ENST00000441310.2:c.316-2A>G		p.X106_splice	ENST00000441310	NM_000534.4	106																																																																																
SF3B1	23451	MSKCC	GRCh37	2	198263207	198263207	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	58	475	0	ENST00000335508.6:c.3112C>A	p.Leu1038Ile	p.L1038I	ENST00000335508	NM_012433.2	1038	Ctt/Att																																																																															
CASP8	841	MSKCC	GRCh37	2	202123034	202123034	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	39	424	0	ENST00000358485.4:c.80C>A	p.Pro27His	p.P27H	ENST00000358485	NM_001080125.1	27	cCt/cAt																																																																															
CASP8	841	MSKCC	GRCh37	2	202141587	202141587	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	43	360	0	ENST00000358485.4:c.878delG	p.Gly293AspfsTer4	p.G293Dfs*4	ENST00000358485	NM_001080125.1	292	cGg/cg																																																																															
CASP8	841	MSKCC	GRCh37	2	202151300	202151300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	35	481	0	ENST00000358485.4:c.1600G>A	p.Val534Ile	p.V534I	ENST00000358485	NM_001080125.1	534	Gtc/Atc																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735477	204735477	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	47	492	0	ENST00000302823.3:c.278A>T	p.Asn93Ile	p.N93I	ENST00000302823	NM_005214.4	93	aAt/aTt																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736204	204736205	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	41	411	0	ENST00000302823.3:c.565dup	p.Met189AsnfsTer24	p.M189Nfs*24	ENST00000302823	NM_005214.4	187	-/A																																																																															
IDH1	3417	MSKCC	GRCh37	2	209101872	209101872	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	47	463	0	ENST00000345146.2:c.1176G>T	p.Leu392Phe	p.L392F	ENST00000345146	NM_005896.2	392	ttG/ttT																																																																															
IDH1	3417	MSKCC	GRCh37	2	209104728	209104728	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	44	264	0	ENST00000345146.2:c.851-1G>T		p.X284_splice	ENST00000345146	NM_005896.2	284																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212576881	212576881	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	38	459	0	ENST00000342788.4:c.1018G>T	p.Gly340Ter	p.G340*	ENST00000342788	NM_005235.2	340	Gga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212578331	212578331	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	40	447	0	ENST00000342788.4:c.926C>A	p.Pro309His	p.P309H	ENST00000342788	NM_005235.2	309	cCt/cAt																																																																															
BARD1	580	MSKCC	GRCh37	2	215645448	215645448	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	95	709	0	ENST00000260947.4:c.1150T>A	p.Ser384Thr	p.S384T	ENST00000260947	NM_000465.2	384	Tcc/Acc																																																																															
BARD1	580	MSKCC	GRCh37	2	215645751	215645751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	46	637	0	ENST00000260947.4:c.847G>A	p.Ala283Thr	p.A283T	ENST00000260947	NM_000465.2	283	Gct/Act																																																																															
BARD1	580	MSKCC	GRCh37	2	215646084	215646085	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs746325928		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	58	678	1	ENST00000260947.4:c.513dup	p.Asp172ArgfsTer10	p.D172Rfs*10	ENST00000260947	NM_000465.2	171	-/A																																																																															
INHA	3623	MSKCC	GRCh37	2	220439938	220439938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	44	808	0	ENST00000243786.2:c.791G>T	p.Arg264Ile	p.R264I	ENST00000243786	NM_002191.3	264	aGa/aTa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	58	542	0	ENST00000305123.5:c.1103C>T	p.Pro368Leu	p.P368L	ENST00000305123	NM_005544.2	368	cCg/cTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663068	227663070	+	frameshift_variant	Frame_Shift_Del	DEL	CGC	CGC	AG			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	41	557	3	ENST00000305123.5:c.385_387delinsCT	p.Ala129LeufsTer21	p.A129Lfs*21	ENST00000305123	NM_005544.2	129	GCG/CT																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663070	227663070	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	41	547	0	ENST00000305123.5:c.385del	p.Ala129ArgfsTer21	p.A129Rfs*21	ENST00000305123	NM_005544.2	129	Gcg/cg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546967	9546968	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	35	395	0	ENST00000353224.5:c.1054dup	p.Arg352LysfsTer79	p.R352Kfs*79	ENST00000353224	NM_177990.2	352	agg/aAgg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561455	9561455	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	119	554	0	ENST00000353224.5:c.327T>A	p.Asp109Glu	p.D109E	ENST00000353224	NM_177990.2	109	gaT/gaA																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624973	9624973	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	19	255	0	ENST00000353224.5:c.4T>A	p.Phe2Ile	p.F2I	ENST00000353224	NM_177990.2	2	Ttt/Att																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31016162	31016162	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	45	547	0	ENST00000375687.4:c.408T>A	p.Cys136Ter	p.C136*	ENST00000375687	NM_015338.5	136	tgT/tgA																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023835	31023835	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	36	645	0	ENST00000375687.4:c.3320T>A	p.Leu1107His	p.L1107H	ENST00000375687	NM_015338.5	1107	cTt/cAt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024805	31024805	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	34	657	0	ENST00000375687.4:c.4293del	p.Ser1432ProfsTer18	p.S1432Pfs*18	ENST00000375687	NM_015338.5	1430	ctC/ct																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31388713	31388713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	43	595	0	ENST00000328111.2:c.1978G>A	p.Ala660Thr	p.A660T	ENST00000328111	NM_006892.3	660	Gcc/Acc																																																																															
SRC	6714	MSKCC	GRCh37	20	36030004	36030004	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	44	599	0	ENST00000358208.4:c.1040-1G>T		p.X347_splice	ENST00000358208		347																																																																																
SRC	6714	MSKCC	GRCh37	20	36030982	36030982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	42	585	0	ENST00000358208.4:c.1261G>A	p.Ala421Thr	p.A421T	ENST00000358208		421	Gcg/Acg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39725870	39725870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	82	375	1	ENST00000361337.2:c.741G>A	p.Met247Ile	p.M247I	ENST00000361337	NM_003286.2	247	atG/atA																																																																															
TOP1	7150	MSKCC	GRCh37	20	39741444	39741444	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	37	321	0	ENST00000361337.2:c.1331A>T	p.Tyr444Phe	p.Y444F	ENST00000361337	NM_003286.2	444	tAc/tTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713373	40713373	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	69	626	0	ENST00000373198.4:c.4142A>T	p.Lys1381Met	p.K1381M	ENST00000373198	NM_133170.3	1381	aAg/aTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	26	447	1	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419846	41419846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	41	358	0	ENST00000373198.4:c.475C>T	p.His159Tyr	p.H159Y	ENST00000373198	NM_133170.3	159	Cat/Tat																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264965	46264965	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	36	454	0	ENST00000371998.3:c.1835C>A	p.Pro612His	p.P612H	ENST00000371998		612	cCt/cAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485416	57485416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	36	367	0	ENST00000371085.3:c.998G>A	p.Arg333His	p.R333H	ENST00000371085	NM_000516.4	333	cGc/cAc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62320462	62320462	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	38	539	0	ENST00000508582.2:c.1927T>C	p.Phe643Leu	p.F643L	ENST00000508582		643	Ttc/Ctc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62322170	62322170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	64	576	2	ENST00000508582.2:c.2498C>T	p.Ala833Val	p.A833V	ENST00000508582		833	gCc/gTc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62324205	62324205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	52	710	1	ENST00000508582.2:c.2772G>A	p.Met924Ile	p.M924I	ENST00000508582		924	atG/atA																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231876	36231877	+	splice_acceptor_variant	Splice_Site	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	32	421	0	ENST00000300305.3:c.509-2_509-1insT		p.X170_splice	ENST00000300305		170																																																																																
U2AF1	7307	MSKCC	GRCh37	21	44527577	44527577	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	32	439	0	ENST00000291552.4:c.28G>T	p.Gly10Cys	p.G10C	ENST00000291552	NM_006758.2	10	Ggc/Tgc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091749	29091749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	15	279	0	ENST00000328354.6:c.1208G>T	p.Gly403Val	p.G403V	ENST00000328354	NM_007194.3	403	gGg/gTg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29106022	29106022	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	45	444	0	ENST00000328354.6:c.818A>G	p.Glu273Gly	p.E273G	ENST00000328354	NM_007194.3	273	gAa/gGa																																																																															
NF2	4771	MSKCC	GRCh37	22	30061043	30061043	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	41	436	0	ENST00000338641.4:c.875T>C	p.Val292Ala	p.V292A	ENST00000338641	NM_000268.3	292	gTt/gCt																																																																															
RAC2	5880	MSKCC	GRCh37	22	37628018	37628018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	34	541	0	ENST00000249071.6:c.242G>A	p.Cys81Tyr	p.C81Y	ENST00000249071	NM_002872.4	81	tGc/tAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41574140	41574140	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	45	486	1	ENST00000263253.7:c.6425G>T	p.Arg2142Met	p.R2142M	ENST00000263253	NM_001429.3	2142	aGg/aTg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12393125	12393125	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	54	625	0	ENST00000287820.6:c.34C>A	p.Pro12Thr	p.P12T	ENST00000287820	NM_015869.4	12	Cca/Aca																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458316	12458316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	63	652	0	ENST00000287820.6:c.933G>T	p.Gln311His	p.Q311H	ENST00000287820	NM_015869.4	311	caG/caT																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626351	12626352	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	38	598	0	ENST00000251849.4:c.1797dup	p.Pro600SerfsTer8	p.P600Sfs*8	ENST00000251849	NM_002880.3	599	-/T																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691842	30691842	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	46	419	0	ENST00000359013.4:c.419A>T	p.Asp140Val	p.D140V	ENST00000359013	NM_001024847.2	140	gAt/gTt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	147	413	23	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732924	30732924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	34	298	0	ENST00000359013.4:c.1612G>A	p.Val538Met	p.V538M	ENST00000359013	NM_001024847.2	538	Gtg/Atg																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182023	38182023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	57	597	0	ENST00000396334.3:c.647G>A	p.Cys216Tyr	p.C216Y	ENST00000396334	NM_002468.4	216	tGt/tAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103819	47103819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	48	491	0	ENST00000409792.3:c.6127G>A	p.Asp2043Asn	p.D2043N	ENST00000409792	NM_014159.6	2043	Gat/Aat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162680	47162680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	50	532	0	ENST00000409792.3:c.3446G>A	p.Ser1149Asn	p.S1149N	ENST00000409792	NM_014159.6	1149	aGt/aAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163377	47163377	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	85	468	0	ENST00000409792.3:c.2749del	p.Ser917ValfsTer5	p.S917Vfs*5	ENST00000409792	NM_014159.6	917	Agt/gt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164475	47164475	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	93	408	0	ENST00000409792.3:c.1651A>G	p.Ser551Gly	p.S551G	ENST00000409792	NM_014159.6	551	Agt/Ggt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165492	47165492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	39	581	0	ENST00000409792.3:c.634G>A	p.Val212Met	p.V212M	ENST00000409792	NM_014159.6	212	Gtg/Atg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165581	47165581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	44	686	0	ENST00000409792.3:c.545C>A	p.Thr182Asn	p.T182N	ENST00000409792	NM_014159.6	182	aCt/aAt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933177	49933177	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	33	545	0	ENST00000296474.3:c.2933T>C	p.Phe978Ser	p.F978S	ENST00000296474	NM_002447.2	978	tTc/tCc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52598140	52598140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	53	615	0	ENST00000394830.3:c.3726G>T	p.Gln1242His	p.Q1242H	ENST00000394830	NM_018313.4	1242	caG/caT																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610608	52610609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	37	574	0	ENST00000394830.3:c.3564dup	p.Glu1189ArgfsTer6	p.E1189Rfs*6	ENST00000394830	NM_018313.4	1188	-/A																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643375	52643375	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	74	489	0	ENST00000394830.3:c.2521C>T	p.Gln841Ter	p.Q841*	ENST00000394830	NM_018313.4	841	Caa/Taa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71102824	71102824	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	44	383	0	ENST00000318789.4:c.383T>C	p.Val128Ala	p.V128A	ENST00000318789	NM_032682.5	128	gTt/gCt																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427651	72427651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	57	440	0	ENST00000477973.2:c.837C>T	p.Ala280Val	p.A280V	ENST00000477973	NM_012234.5	280	gCa/gTa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259614	89259614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	96	362	0	ENST00000336596.2:c.758C>T	p.Pro253Leu	p.P253L	ENST00000336596	NM_005233.5	253	cCc/cTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480484	89480484	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	29	331	0	ENST00000336596.2:c.2321A>G	p.Asp774Gly	p.D774G	ENST00000336596	NM_005233.5	774	gAc/gGc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119721060	119721060	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	58	511	0	ENST00000316626.5:c.115A>T	p.Thr39Ser	p.T39S	ENST00000316626		39	Aca/Tca																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880965	134880965	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	61	527	0	ENST00000398015.3:c.1528A>G	p.Thr510Ala	p.T510A	ENST00000398015	NM_004441.4	510	Act/Gct																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138431131	138431131	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	35	410	0	ENST00000289153.2:c.1318T>C	p.Trp440Arg	p.W440R	ENST00000289153	NM_006219.2	440	Tgg/Cgg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138433399	138433399	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	51	665	0	ENST00000289153.2:c.1213del	p.Tyr405MetfsTer7	p.Y405Mfs*7	ENST00000289153	NM_006219.2	405	Tat/at																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665183	138665183	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	26	678	0	ENST00000330315.3:c.382T>A	p.Trp128Arg	p.W128R	ENST00000330315	NM_023067.3	128	Tgg/Agg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665462	138665462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	28	541	0	ENST00000330315.3:c.103G>T	p.Gly35Cys	p.G35C	ENST00000330315	NM_023067.3	35	Ggc/Tgc																																																																															
ATR	545	MSKCC	GRCh37	3	142168281	142168281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	50	426	0	ENST00000350721.4:c.7925C>T	p.Pro2642Leu	p.P2642L	ENST00000350721	NM_001184.3	2642	cCa/cTa																																																																															
ATR	545	MSKCC	GRCh37	3	142217584	142217584	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	34	516	0	ENST00000350721.4:c.5413G>T	p.Gly1805Ter	p.G1805*	ENST00000350721	NM_001184.3	1805	Gga/Tga																																																																															
ATR	545	MSKCC	GRCh37	3	142224079	142224079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	36	592	0	ENST00000350721.4:c.5098C>T	p.Pro1700Ser	p.P1700S	ENST00000350721	NM_001184.3	1700	Cca/Tca																																																																															
ATR	545	MSKCC	GRCh37	3	142257439	142257439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	39	380	0	ENST00000350721.4:c.3610G>T	p.Asp1204Tyr	p.D1204Y	ENST00000350721	NM_001184.3	1204	Gat/Tat																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149290773	149290774	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	43	464	0	ENST00000360632.3:c.445dup	p.Ile149AsnfsTer8	p.I149Nfs*8	ENST00000360632	NM_015472.4	149	atc/aAtc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	41	633	6	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170002304	170002304	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	16	170	0	ENST00000295797.4:c.1123A>G	p.Ile375Val	p.I375V	ENST00000295797	NM_002740.5	375	Att/Gtt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928101	178928101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	84	528	0	ENST00000263967.3:c.1379G>A	p.Gly460Asp	p.G460D	ENST00000263967	NM_006218.2	460	gGt/gAt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430452	181430452	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	26	635	1	ENST00000325404.1:c.304A>G	p.Met102Val	p.M102V	ENST00000325404	NM_003106.3	102	Atg/Gtg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502362	186502362	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	91	400	0	ENST00000323963.5:c.85A>G	p.Asn29Asp	p.N29D	ENST00000323963		29	Aat/Gat																																																																															
BCL6	604	MSKCC	GRCh37	3	187444640	187444640	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	54	506	0	ENST00000232014.4:c.1587G>T	p.Glu529Asp	p.E529D	ENST00000232014	NM_001130845.1	529	gaG/gaT																																																																															
BCL6	604	MSKCC	GRCh37	3	187447385	187447385	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	47	680	0	ENST00000232014.4:c.808C>T	p.Arg270Ter	p.R270*	ENST00000232014	NM_001130845.1	270	Cga/Tga																																																																															
BCL6	604	MSKCC	GRCh37	3	187447552	187447552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	88	515	0	ENST00000232014.4:c.641G>A	p.Arg214Gln	p.R214Q	ENST00000232014	NM_001130845.1	214	cGg/cAg																																																																															
TP63	8626	MSKCC	GRCh37	3	189590742	189590742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	91	539	0	ENST00000264731.3:c.1307G>A	p.Arg436Lys	p.R436K	ENST00000264731	NM_003722.4	436	aGg/aAg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808856	1808856	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	42	685	0	ENST00000260795.2:c.2288T>C	p.Leu763Pro	p.L763P	ENST00000260795		763	cTg/cCg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1918709	1918709	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	34	342	0	ENST00000382891.5:c.876del	p.Lys292AsnfsTer20	p.K292Nfs*20	ENST00000382891	NM_133335.3	291	gAa/ga																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1941480	1941480	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	37	443	0	ENST00000382891.5:c.1856C>A	p.Pro619His	p.P619H	ENST00000382891	NM_133335.3	619	cCt/cAt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957915	1957915	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	50	339	0	ENST00000382891.5:c.2881G>A	p.Ala961Thr	p.A961T	ENST00000382891	NM_133335.3	961	Gca/Aca																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1976686	1976686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	56	628	0	ENST00000382891.5:c.3469G>A	p.Gly1157Arg	p.G1157R	ENST00000382891	NM_133335.3	1157	Ggg/Agg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141132	55141132	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	98	392	0	ENST00000257290.5:c.1778T>C	p.Leu593Pro	p.L593P	ENST00000257290	NM_006206.4	593	cTa/cCa																																																																															
KIT	3815	MSKCC	GRCh37	4	55594228	55594228	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	69	525	1	ENST00000288135.5:c.1931T>C	p.Leu644Pro	p.L644P	ENST00000288135	NM_000222.2	644	cTg/cCg																																																																															
KIT	3815	MSKCC	GRCh37	4	55594289	55594289	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	47	508	0	ENST00000288135.5:c.1990+2T>C		p.X664_splice	ENST00000288135	NM_000222.2	664																																																																																
KDR	3791	MSKCC	GRCh37	4	55964423	55964423	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	32	483	0	ENST00000263923.4:c.2390T>C	p.Leu797Pro	p.L797P	ENST00000263923	NM_002253.2	797	cTg/cCg																																																																															
TET2	54790	MSKCC	GRCh37	4	106157335	106157336	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	34	391	0	ENST00000380013.4:c.2241dup	p.Leu748IlefsTer6	p.L748Ifs*6	ENST00000380013	NM_001127208.2	746	caa/cAaa																																																																															
TET2	54790	MSKCC	GRCh37	4	106190830	106190830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	44	526	0	ENST00000380013.4:c.4108G>T	p.Gly1370Trp	p.G1370W	ENST00000380013	NM_001127208.2	1370	Ggg/Tgg																																																																															
TET2	54790	MSKCC	GRCh37	4	106197493	106197493	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	30	320	0	ENST00000380013.4:c.5826G>T	p.Gln1942His	p.Q1942H	ENST00000380013	NM_001127208.2	1942	caG/caT																																																																															
TET2	54790	MSKCC	GRCh37	4	106197553	106197554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	38	381	0	ENST00000380013.4:c.5887dup	p.Thr1963AsnfsTer52	p.T1963Nfs*52	ENST00000380013	NM_001127208.2	1962	-/A																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247348	153247348	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	29	300	0	ENST00000281708.4:c.1454T>G	p.Val485Gly	p.V485G	ENST00000281708	NM_033632.3	485	gTt/gGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518153	187518153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	43	514	0	ENST00000441802.2:c.12541G>A	p.Glu4181Lys	p.E4181K	ENST00000441802	NM_005245.3	4181	Gaa/Aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534484	187534484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748020206		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	40	283	1	ENST00000441802.2:c.9242C>T	p.Thr3081Met	p.T3081M	ENST00000441802	NM_005245.3	3081	aCg/aTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538976	187538976	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	45	558	0	ENST00000441802.2:c.8764A>C	p.Ile2922Leu	p.I2922L	ENST00000441802	NM_005245.3	2922	Atc/Ctc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540935	187540935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	38	369	0	ENST00000441802.2:c.6805G>A	p.Val2269Met	p.V2269M	ENST00000441802	NM_005245.3	2269	Gtg/Atg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557208	187557208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	38	436	0	ENST00000441802.2:c.4154C>T	p.Pro1385Leu	p.P1385L	ENST00000441802	NM_005245.3	1385	cCt/cTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628407	187628407	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	61	782	0	ENST00000441802.2:c.2575T>C	p.Tyr859His	p.Y859H	ENST00000441802	NM_005245.3	859	Tac/Cac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629391	187629391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	119	644	1	ENST00000441802.2:c.1591C>T	p.Pro531Ser	p.P531S	ENST00000441802	NM_005245.3	531	Cct/Tct																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31410867	31410867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	61	564	0	ENST00000344624.3:c.3653C>T	p.Ala1218Val	p.A1218V	ENST00000344624		1218	gCg/gTg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31422952	31422952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	60	604	0	ENST00000344624.3:c.3361G>A	p.Val1121Ile	p.V1121I	ENST00000344624		1121	Gtt/Att																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526684	31526684	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	39	737	0	ENST00000344624.3:c.356C>A	p.Pro119His	p.P119H	ENST00000344624		119	cCc/cAc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35857163	35857163	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	18	339	0	ENST00000303115.3:c.82+2T>C		p.X28_splice	ENST00000303115	NM_002185.3	28																																																																																
IL7R	3575	MSKCC	GRCh37	5	35874580	35874580	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	45	580	0	ENST00000303115.3:c.736A>C	p.Ser246Arg	p.S246R	ENST00000303115	NM_002185.3	246	Agc/Cgc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38958932	38958932	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	28	227	0	ENST00000357387.3:c.2180C>T	p.Ala727Val	p.A727V	ENST00000357387	NM_152756.3	727	gCc/gTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178257	56178258	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	59	357	0	ENST00000399503.3:c.3236dup	p.Asn1079LysfsTer2	p.N1079Kfs*2	ENST00000399503	NM_005921.1	1077	tca/tcAa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750769	57750769	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	97	445	0	ENST00000274289.3:c.1835T>C	p.Leu612Pro	p.L612P	ENST00000274289	NM_006622.3	612	cTa/cCa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67569766	67569766	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	40	372	0	ENST00000274335.5:c.428-1G>T		p.X143_splice	ENST00000274335		143																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67588995	67588996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	41	317	0	ENST00000274335.5:c.1090dup	p.Met364AsnfsTer4	p.M364Nfs*4	ENST00000274335		362	-/A																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	39	293	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	109	537	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
MSH3	4437	MSKCC	GRCh37	5	80063751	80063751	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	80	417	0	ENST00000265081.6:c.1897-1G>A		p.X633_splice	ENST00000265081	NM_002439.4	633																																																																																
APC	324	MSKCC	GRCh37	5	112111360	112111360	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	29	189	0	ENST00000257430.4:c.457A>C	p.Lys153Gln	p.K153Q	ENST00000257430	NM_000038.5	153	Aag/Cag																																																																															
APC	324	MSKCC	GRCh37	5	112116493	112116493	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	46	251	0	ENST00000257430.4:c.539del	p.Leu180TyrfsTer5	p.L180Yfs*5	ENST00000257430	NM_000038.5	180	Tta/ta																																																																															
APC	324	MSKCC	GRCh37	5	112137060	112137060	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	33	367	0	ENST00000257430.4:c.814G>T	p.Ala272Ser	p.A272S	ENST00000257430	NM_000038.5	272	Gca/Tca																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	50	290	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112176291	112176291	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	38	330	2	ENST00000257430.4:c.5000A>T	p.Asn1667Ile	p.N1667I	ENST00000257430	NM_000038.5	1667	aAt/aTt																																																																															
APC	324	MSKCC	GRCh37	5	112177341	112177341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	42	343	0	ENST00000257430.4:c.6050C>T	p.Thr2017Ile	p.T2017I	ENST00000257430	NM_000038.5	2017	aCc/aTc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131927650	131927650	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	84	318	0	ENST00000265335.6:c.1722del	p.Lys574AsnfsTer24	p.K574Nfs*24	ENST00000265335		573	Aaa/aa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131938996	131938996	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	39	272	0	ENST00000265335.6:c.2212A>C	p.Ser738Arg	p.S738R	ENST00000265335		738	Agc/Cgc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149439313	149439313	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	40	646	0	ENST00000286301.3:c.2082G>T	p.Glu694Asp	p.E694D	ENST00000286301	NM_005211.3	694	gaG/gaT																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149465968	149465968	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	47	796	0	ENST00000286301.3:c.23T>C	p.Leu8Pro	p.L8P	ENST00000286301	NM_005211.3	8	cTc/cCc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149495446	149495446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	35	764	0	ENST00000261799.4:c.3201G>T	p.Gln1067His	p.Q1067H	ENST00000261799	NM_002609.3	1067	caG/caT																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502765	149502765	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	72	489	2	ENST00000261799.4:c.2024-1G>T		p.X675_splice	ENST00000261799	NM_002609.3	675																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176518058	176518058	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	51	667	0	ENST00000292408.4:c.557del	p.Lys186ArgfsTer25	p.K186Rfs*25	ENST00000292408	NM_213647.1	186	Aag/ag																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519663	176519663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	47	632	0	ENST00000292408.4:c.935G>A	p.Ser312Asn	p.S312N	ENST00000292408	NM_213647.1	312	aGc/aAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176631187	176631187	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	38	486	0	ENST00000439151.2:c.1130G>A	p.Trp377Ter	p.W377*	ENST00000439151	NM_022455.4	377	tGg/tAg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638085	176638085	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	66	636	0	ENST00000439151.2:c.2685T>A	p.Ser895Arg	p.S895R	ENST00000439151	NM_022455.4	895	agT/agA																																																																															
NSD1	64324	MSKCC	GRCh37	5	176720840	176720840	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	40	495	0	ENST00000439151.2:c.6471G>A	p.Trp2157Ter	p.W2157*	ENST00000439151	NM_022455.4	2157	tgG/tgA																																																																															
NSD1	64324	MSKCC	GRCh37	5	176722110	176722110	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	87	427	0	ENST00000439151.2:c.7741A>G	p.Lys2581Glu	p.K2581E	ENST00000439151	NM_022455.4	2581	Aag/Gag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180036960	180036960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	104	643	0	ENST00000261937.6:c.3752G>T	p.Arg1251Met	p.R1251M	ENST00000261937	NM_182925.4	1251	aGg/aTg																																																																															
IRF4	3662	MSKCC	GRCh37	6	397241	397241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	21	276	0	ENST00000380956.4:c.626C>T	p.Ala209Val	p.A209V	ENST00000380956	NM_001195286.1	209	gCt/gTt																																																																															
E2F3	1871	MSKCC	GRCh37	6	20486929	20486929	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	29	312	0	ENST00000346618.3:c.894T>A	p.Tyr298Ter	p.Y298*	ENST00000346618	NM_001949.4	298	taT/taA																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045714	26045714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	21	262	0	ENST00000540144.1:c.76G>A	p.Ala26Thr	p.A26T	ENST00000540144	NM_003531.2	26	Gcc/Acc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056260	26056260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	45	568	0	ENST00000343677.2:c.397G>A	p.Gly133Arg	p.G133R	ENST00000343677	NM_005319.3	133	Ggg/Agg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056349	26056349	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201295771		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	37	438	2	ENST00000343677.2:c.308G>A	p.Gly103Asp	p.G103D	ENST00000343677	NM_005319.3	103	gGc/gAc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056568	26056568	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	24	252	0	ENST00000343677.2:c.89delG	p.Gly30ValfsTer33	p.G30Vfs*33	ENST00000343677	NM_005319.3	30	gGt/gt																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158709	26158709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	23	261	0	ENST00000289316.2:c.316del	p.Glu106SerfsTer29	p.E106Sfs*29	ENST00000289316	NM_138720.2	104	ccG/cc																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225384	26225384	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	13	155	0	ENST00000360408.1:c.2T>C	p.Met1?	p.M1?	ENST00000360408	NM_003532.2	1	aTg/aCg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30676084	30676084	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	32	418	0	ENST00000376406.3:c.2272A>T	p.Arg758Ter	p.R758*	ENST00000376406	NM_014641.2	758	Aga/Tga																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681829	30681829	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	37	580	2	ENST00000376406.3:c.268C>T	p.Arg90Ter	p.R90*	ENST00000376406	NM_014641.2	90	Cga/Tga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32172069	32172069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	42	735	0	ENST00000375023.3:c.2963G>T	p.Gly988Val	p.G988V	ENST00000375023	NM_004557.3	988	gGa/gTa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180262	32180262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	39	501	0	ENST00000375023.3:c.2669C>T	p.Ala890Val	p.A890V	ENST00000375023	NM_004557.3	890	gCa/gTa																																																																															
TAP1	6890	MSKCC	GRCh37	6	32813386	32813386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	50	820	0	ENST00000354258.4:c.2397G>A	p.Met799Ile	p.M799I	ENST00000354258	NM_000593.5	799	atG/atA																																																																															
TAP1	6890	MSKCC	GRCh37	6	32813402	32813402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	116	799	0	ENST00000354258.4:c.2381G>A	p.Gly794Glu	p.G794E	ENST00000354258	NM_000593.5	794	gGg/gAg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32814886	32814886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	60	726	0	ENST00000354258.4:c.2179G>A	p.Asp727Asn	p.D727N	ENST00000354258	NM_000593.5	727	Gat/Aat																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790819	89790819	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	20	634	4	ENST00000336032.3:c.211delC	p.Gln71SerfsTer112	p.Q71Sfs*112	ENST00000336032	NM_006813.2	69	aCc/ac																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793754	89793755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	41	425	0	ENST00000336032.3:c.827dup	p.Glu277GlyfsTer9	p.E277Gfs*9	ENST00000336032	NM_006813.2	275	caa/cAaa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956685	93956685	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	39	358	1	ENST00000369303.4:c.2551G>T	p.Glu851Ter	p.E851*	ENST00000369303	NM_004440.3	851	Gaa/Taa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553015	106553015	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	99	591	0	ENST00000369096.4:c.984del	p.Ile329PhefsTer49	p.I329Ffs*49	ENST00000369096	NM_001198.3	327	tCc/tc																																																																															
SESN1	27244	MSKCC	GRCh37	6	109322549	109322549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	56	661	0	ENST00000436639.2:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000436639	NM_014454.2	163	tAt/tGt																																																																															
FYN	2534	MSKCC	GRCh37	6	112015699	112015699	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	47	533	0	ENST00000368678.4:c.1143G>T	p.Met381Ile	p.M381I	ENST00000368678		381	atG/atT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710947	117710947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	38	385	0	ENST00000368508.3:c.1325G>A	p.Arg442Gln	p.R442Q	ENST00000368508	NM_002944.2	442	cGg/cAg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117714459	117714459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	74	462	0	ENST00000368508.3:c.1190G>A	p.Cys397Tyr	p.C397Y	ENST00000368508	NM_002944.2	397	tGc/tAc																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137525524	137525524	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	50	601	0	ENST00000367739.4:c.491A>G	p.Glu164Gly	p.E164G	ENST00000367739	NM_000416.2	164	gAa/gGa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200456	138200456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	42	484	1	ENST00000237289.4:c.1874C>T	p.Thr625Ile	p.T625I	ENST00000237289	NM_001270507.1	625	aCa/aTa																																																																															
LATS1	9113	MSKCC	GRCh37	6	149982876	149982876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	38	455	0	ENST00000253339.5:c.3382G>T	p.Val1128Leu	p.V1128L	ENST00000253339		1128	Gta/Tta																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099825	157099825	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	26	441	0	ENST00000346085.5:c.762A>T	p.Gln254His	p.Q254H	ENST00000346085	NM_020732.3	254	caA/caT																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405795	157405795	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	58	309	0	ENST00000346085.5:c.2038-1G>T		p.X680_splice	ENST00000346085	NM_020732.3	680																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157405974	157405974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	47	523	0	ENST00000346085.5:c.2216C>A	p.Pro739His	p.P739H	ENST00000346085	NM_020732.3	739	cCt/cAt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157406036	157406036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	52	351	0	ENST00000346085.5:c.2278C>T	p.Pro760Ser	p.P760S	ENST00000346085	NM_020732.3	760	Cca/Tca																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521942	157521942	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	43	433	0	ENST00000346085.5:c.4214A>G	p.Asn1405Ser	p.N1405S	ENST00000346085	NM_020732.3	1405	aAc/aGc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527806	157527806	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	39	423	0	ENST00000346085.5:c.5531G>T	p.Arg1844Met	p.R1844M	ENST00000346085	NM_020732.3	1844	aGg/aTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528599	157528599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	61	658	0	ENST00000346085.5:c.6324G>T	p.Gln2108His	p.Q2108H	ENST00000346085	NM_020732.3	2108	caG/caT																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959019	2959019	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	35	607	0	ENST00000396946.4:c.2497C>T	p.Pro833Ser	p.P833S	ENST00000396946	NM_032415.4	833	Ccc/Tcc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962345	2962345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	82	691	1	ENST00000396946.4:c.2192G>T	p.Cys731Phe	p.C731F	ENST00000396946	NM_032415.4	731	tGc/tTc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978390	2978390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	89	784	0	ENST00000396946.4:c.940G>A	p.Glu314Lys	p.E314K	ENST00000396946	NM_032415.4	314	Gag/Aag																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026430	6026430	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	35	196	0	ENST00000265849.7:c.1966G>T	p.Glu656Ter	p.E656*	ENST00000265849	NM_000535.5	656	Gaa/Taa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026725	6026725	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	88	619	0	ENST00000265849.7:c.1671T>G	p.Asp557Glu	p.D557E	ENST00000265849	NM_000535.5	557	gaT/gaG																																																																															
RAC1	5879	MSKCC	GRCh37	7	6426866	6426866	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	105	577	0	ENST00000356142.4:c.59T>C	p.Leu20Pro	p.L20P	ENST00000356142	NM_018890.3	20	cTg/cCg																																																																															
HGF	3082	MSKCC	GRCh37	7	81358966	81358966	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	42	556	0	ENST00000222390.5:c.995A>C	p.Gln332Pro	p.Q332P	ENST00000222390	NM_000601.4	332	cAg/cCg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508319	106508319	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	32	318	0	ENST00000359195.3:c.313C>T	p.Gln105Ter	p.Q105*	ENST00000359195	NM_002649.2	105	Cag/Tag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509633	106509633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	41	478	0	ENST00000359195.3:c.1627G>A	p.Val543Ile	p.V543I	ENST00000359195	NM_002649.2	543	Gtt/Att																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545697	106545698	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	88	577	0	ENST00000359195.3:c.3179dup	p.Asn1060LysfsTer2	p.N1060Kfs*2	ENST00000359195	NM_002649.2	1058	-/A																																																																															
MET	4233	MSKCC	GRCh37	7	116339643	116339643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	56	424	0	ENST00000397752.3:c.505C>T	p.Pro169Ser	p.P169S	ENST00000397752	NM_000245.2	169	Ccc/Tcc																																																																															
MET	4233	MSKCC	GRCh37	7	116339841	116339841	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	60	548	0	ENST00000397752.3:c.703A>G	p.Ile235Val	p.I235V	ENST00000397752	NM_000245.2	235	Att/Gtt																																																																															
MET	4233	MSKCC	GRCh37	7	116395436	116395436	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	30	499	0	ENST00000397752.3:c.1729G>T	p.Gly577Ter	p.G577*	ENST00000397752	NM_000245.2	577	Gga/Tga																																																																															
MET	4233	MSKCC	GRCh37	7	116412710	116412710	+	intron_variant	Intron	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	59	873	0	ENST00000397752.3:c.3028+667T>C		p.*1010*	ENST00000397752	NM_000245.2																																																																																	
MET	4233	MSKCC	GRCh37	7	116418859	116418859	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	78	329	0	ENST00000397752.3:c.3370T>A	p.Phe1124Ile	p.F1124I	ENST00000397752	NM_000245.2	1124	Ttt/Att																																																																															
SMO	6608	MSKCC	GRCh37	7	128845476	128845476	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	63	763	0	ENST00000249373.3:c.773A>T	p.Asn258Ile	p.N258I	ENST00000249373	NM_005631.4	258	aAc/aTc																																																																															
SMO	6608	MSKCC	GRCh37	7	128846428	128846428	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	35	434	1	ENST00000249373.3:c.1264G>A	p.Gly422Arg	p.G422R	ENST00000249373	NM_005631.4	422	Gga/Aga																																																																															
SMO	6608	MSKCC	GRCh37	7	128851536	128851536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	50	662	0	ENST00000249373.3:c.1861C>T	p.His621Tyr	p.H621Y	ENST00000249373	NM_005631.4	621	Cat/Tat																																																																															
EZH2	2146	MSKCC	GRCh37	7	148507433	148507433	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	56	480	0	ENST00000320356.2:c.2021T>C	p.Leu674Ser	p.L674S	ENST00000320356	NM_004456.4	674	tTg/tCg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148515176	148515176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	48	361	1	ENST00000320356.2:c.1033G>A	p.Ala345Thr	p.A345T	ENST00000320356	NM_004456.4	345	Gct/Act																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845684	151845684	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	95	620	0	ENST00000262189.6:c.13328A>G	p.Gln4443Arg	p.Q4443R	ENST00000262189	NM_170606.2	4443	cAg/cGg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859911	151859911	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	71	469	0	ENST00000262189.6:c.10751del	p.Gly3584AspfsTer13	p.G3584Dfs*13	ENST00000262189	NM_170606.2	3584	gGa/ga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874012	151874013	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	39	592	1	ENST00000262189.6:c.8525dup	p.Asn2842LysfsTer2	p.N2842Kfs*2	ENST00000262189	NM_170606.2	2842	aat/aaAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877959	151877959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	43	404	0	ENST00000262189.6:c.6986G>A	p.Gly2329Glu	p.G2329E	ENST00000262189	NM_170606.2	2329	gGa/gAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878862	151878862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	112	604	0	ENST00000262189.6:c.6083G>A	p.Arg2028Gln	p.R2028Q	ENST00000262189	NM_170606.2	2028	cGa/cAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891651	151891651	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	51	289	0	ENST00000262189.6:c.4381A>G	p.Ile1461Val	p.I1461V	ENST00000262189	NM_170606.2	1461	Att/Gtt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152055745	152055745	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	81	543	3	ENST00000262189.6:c.177del	p.Thr61LeufsTer44	p.T61Lfs*44	ENST00000262189	NM_170606.2	59	ggG/gg																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538933	23538933	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	40	655	0	ENST00000380871.4:c.506A>G	p.Lys169Arg	p.K169R	ENST00000380871	NM_006167.3	169	aAg/aGg																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194729	29194729	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	89	778	1	ENST00000240100.2:c.999G>T	p.Gln333His	p.Q333H	ENST00000240100	NM_001394.6	333	caG/caT																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38173059	38173059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	46	400	0	ENST00000317025.8:c.1990G>T	p.Gly664Cys	p.G664C	ENST00000317025	NM_023034.1	664	Ggc/Tgc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271244	38271244	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	36	706	0	ENST00000425967.3:c.2464G>T	p.Gly822Trp	p.G822W	ENST00000425967	NM_001174067.1	822	Ggg/Tgg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38314969	38314969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	54	707	0	ENST00000425967.3:c.95C>A	p.Thr32Asn	p.T32N	ENST00000425967	NM_001174067.1	32	aCt/aAt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370975	55370975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	39	607	0	ENST00000297316.4:c.277C>A	p.Leu93Met	p.L93M	ENST00000297316	NM_022454.3	93	Ctg/Atg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371002	55371002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	26	530	1	ENST00000297316.4:c.304C>A	p.Leu102Met	p.L102M	ENST00000297316	NM_022454.3	102	Ctg/Atg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372230	55372230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	32	434	0	ENST00000297316.4:c.920G>A	p.Gly307Asp	p.G307D	ENST00000297316	NM_022454.3	307	gGc/gAc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372287	55372288	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	29	578	0	ENST00000297316.4:c.983dup	p.Gly331ArgfsTer34	p.G331Rfs*34	ENST00000297316	NM_022454.3	326	cac/caCc																																																																															
LYN	4067	MSKCC	GRCh37	8	56922580	56922580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	99	518	0	ENST00000519728.1:c.1450G>A	p.Ala484Thr	p.A484T	ENST00000519728	NM_002350.3	484	Gca/Aca																																																																															
PREX2	80243	MSKCC	GRCh37	8	69011988	69011988	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	65	705	0	ENST00000288368.4:c.2625A>T	p.Glu875Asp	p.E875D	ENST00000288368	NM_024870.2	875	gaA/gaT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69030790	69030790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	32	393	0	ENST00000288368.4:c.3332G>A	p.Cys1111Tyr	p.C1111Y	ENST00000288368	NM_024870.2	1111	tGc/tAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69058565	69058616	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCATCCTGTTCTTTTTGCACAAGGTAAACTGTTTCTCTTTTGATGGCTGCTA	TCATCCTGTTCTTTTTGCACAAGGTAAACTGTTTCTCTTTTGATGGCTGCTA	GATATTTAATAGTATATTACTTCCTAAAATAAGGATATGCTAGATGG			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	85	682	2	ENST00000288368.4:c.4209_4231+29delinsGATATTTAATAGTATATTACTTCCTAAAATAAGGATATGCTAGATGG		p.X1403_splice	ENST00000288368	NM_024870.2	1403																																																																																
NBN	4683	MSKCC	GRCh37	8	90958479	90958480	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	36	507	0	ENST00000265433.3:c.1958dup	p.Leu654AlafsTer5	p.L654Afs*5	ENST00000265433	NM_002485.4	653	aag/aaAg																																																																															
MYC	4609	MSKCC	GRCh37	8	128751043	128751043	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	58	545	0	ENST00000377970.2:c.580C>T	p.Gln194Ter	p.Q194*	ENST00000377970	NM_002467.4	194	Cag/Tag																																																																															
AGO2	27161	MSKCC	GRCh37	8	141583031	141583031	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	51	604	1	ENST00000220592.5:c.216G>T	p.Arg72Ser	p.R72S	ENST00000220592	NM_012154.3	72	agG/agT																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738379	145738379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	46	687	0	ENST00000428558.2:c.2606G>A	p.Gly869Asp	p.G869D	ENST00000428558	NM_004260.3	869	gGt/gAt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741607	145741607	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	43	750	0	ENST00000428558.2:c.896C>A	p.Pro299Gln	p.P299Q	ENST00000428558	NM_004260.3	299	cCa/cAa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486205	8486205	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	31	425	0	ENST00000356435.5:c.2612T>A	p.Leu871His	p.L871H	ENST00000356435		871	cTt/cAt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499748	8499748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	44	628	0	ENST00000356435.5:c.2221C>T	p.His741Tyr	p.H741Y	ENST00000356435		741	Cat/Tat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518185	8518185	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	38	421	0	ENST00000356435.5:c.1206del	p.Pro403LeufsTer7	p.P403Lfs*7	ENST00000356435		402	ggG/gg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8526627	8526627	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	76	399	0	ENST00000356435.5:c.568G>T	p.Gly190Ter	p.G190*	ENST00000356435		190	Gga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971119	21971120	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	65	530	0	ENST00000304494.5:c.238dup	p.Arg80ProfsTer40	p.R80Pfs*40	ENST00000304494	NM_000077.4	80	cga/cCga																																																																															
TEK	7010	MSKCC	GRCh37	9	27212833	27212833	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	58	708	0	ENST00000380036.4:c.2815C>T	p.Gln939Ter	p.Q939*	ENST00000380036	NM_000459.3	939	Cag/Tag																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966649	36966649	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	40	514	0	ENST00000358127.4:c.677del	p.Gly226GlufsTer52	p.G226Efs*52	ENST00000358127	NM_001280556.1	226	gGa/ga																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635172	87635172	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	33	512	0	ENST00000277120.3:c.2224A>G	p.Met742Val	p.M742V	ENST00000277120		742	Atg/Gtg																																																																															
SYK	6850	MSKCC	GRCh37	9	93637126	93637127	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	35	403	0	ENST00000375746.1:c.1181dup	p.Val395SerfsTer16	p.V395Sfs*16	ENST00000375746	NM_001174167.1	392	-/A																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209521	98209521	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	42	554	0	ENST00000331920.6:c.4017G>A	p.Trp1339Ter	p.W1339*	ENST00000331920	NM_000264.3	1339	tgG/tgA																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101904843	101904843	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	99	398	0	ENST00000374994.4:c.831G>A	p.Trp277Ter	p.W277*	ENST00000374994	NM_004612.2	277	tgG/tgA																																																																															
ABL1	25	MSKCC	GRCh37	9	133730443	133730443	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	39	437	0	ENST00000318560.5:c.509G>T	p.Arg170Met	p.R170M	ENST00000318560	NM_005157.4	170	aGg/aTg																																																																															
ABL1	25	MSKCC	GRCh37	9	133748300	133748300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	86	559	0	ENST00000318560.5:c.961G>A	p.Gly321Arg	p.G321R	ENST00000318560	NM_005157.4	321	Ggg/Agg																																																																															
ABL1	25	MSKCC	GRCh37	9	133753826	133753826	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	52	609	0	ENST00000318560.5:c.1295T>A	p.Ile432Asn	p.I432N	ENST00000318560	NM_005157.4	432	aTt/aAt																																																																															
ABL1	25	MSKCC	GRCh37	9	133755989	133755989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	54	512	0	ENST00000318560.5:c.1616C>T	p.Ala539Val	p.A539V	ENST00000318560	NM_005157.4	539	gCa/gTa																																																																															
ABL1	25	MSKCC	GRCh37	9	133760511	133760511	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	38	702	0	ENST00000318560.5:c.2834C>A	p.Ala945Asp	p.A945D	ENST00000318560	NM_005157.4	945	gCt/gAt																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139815627	139815627	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	45	591	0	ENST00000247668.2:c.1098G>T	p.Gln366His	p.Q366H	ENST00000247668	NM_021138.3	366	caG/caT																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934126	39934127	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	45	335	0	ENST00000378444.4:c.472dup	p.Ser158LysfsTer28	p.S158Kfs*28	ENST00000378444	NM_001123385.1	158	agt/aAgt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44935949	44935949	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	38	203	0	ENST00000377967.4:c.2710G>T	p.Gly904Cys	p.G904C	ENST00000377967	NM_021140.2	904	Ggt/Tgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044872	47044872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	34	421	0	ENST00000329236.7:c.1964G>A	p.Ser655Asn	p.S655N	ENST00000329236	NM_001204466.1	655	aGc/aAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63409931	63409931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	34	206	0	ENST00000330258.3:c.3236G>A	p.Gly1079Asp	p.G1079D	ENST00000330258	NM_152424.3	1079	gGc/gAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410936	63410936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs189503587		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	99	357	0	ENST00000330258.3:c.2231C>T	p.Ala744Val	p.A744V	ENST00000330258	NM_152424.3	744	gCc/gTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412174	63412174	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	17	482	0	ENST00000330258.3:c.993A>G	p.Ile331Met	p.I331M	ENST00000330258	NM_152424.3	331	atA/atG																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413082	63413082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138399473		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	26	372	0	ENST00000330258.3:c.85G>A	p.Ala29Thr	p.A29T	ENST00000330258	NM_152424.3	29	Gcc/Acc																																																																															
AR	367	MSKCC	GRCh37	X	66766444	66766444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			10	46	145	0	ENST00000374690.3:c.1456C>T	p.Pro486Ser	p.P486S	ENST00000374690	NM_000044.3	486	Ccc/Tcc																																																																															
ATRX	546	MSKCC	GRCh37	X	76814280	76814280	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	44	196	1	ENST00000373344.5:c.6364C>A	p.Leu2122Ile	p.L2122I	ENST00000373344	NM_000489.3	2122	Cta/Ata																																																																															
ATRX	546	MSKCC	GRCh37	X	76849320	76849320	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	39	206	0	ENST00000373344.5:c.5957-1G>T		p.X1986_splice	ENST00000373344	NM_000489.3	1986																																																																																
ATRX	546	MSKCC	GRCh37	X	76937371	76937371	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	78	294	0	ENST00000373344.5:c.3377A>G	p.Asp1126Gly	p.D1126G	ENST00000373344	NM_000489.3	1126	gAt/gGt																																																																															
ATRX	546	MSKCC	GRCh37	X	76939178	76939178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	22	330	0	ENST00000373344.5:c.1570G>A	p.Val524Ile	p.V524I	ENST00000373344	NM_000489.3	524	Gtt/Att																																																																															
ATRX	546	MSKCC	GRCh37	X	76939798	76939798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	107	311	1	ENST00000373344.5:c.950C>A	p.Pro317Gln	p.P317Q	ENST00000373344	NM_000489.3	317	cCa/cAa																																																																															
BTK	695	MSKCC	GRCh37	X	100611814	100611814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	47	313	0	ENST00000308731.7:c.1307C>T	p.Ser436Phe	p.S436F	ENST00000308731	NM_000061.2	436	tCc/tTc																																																																															
BTK	695	MSKCC	GRCh37	X	100615075	100615075	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	126	291	0	ENST00000308731.7:c.839+1G>T		p.X280_splice	ENST00000308731	NM_000061.2	280																																																																																
STAG2	10735	MSKCC	GRCh37	X	123171465	123171465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	31	240	0	ENST00000218089.9:c.377G>A	p.Gly126Asp	p.G126D	ENST00000218089	NM_001042749.1	126	gGc/gAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28929495		P-0035869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	121	595	0	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0035869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	93	536	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	36	338	0	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0035869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	110	230	0				ENST00000310581	NM_198253.2																																																																																	
FLT1	2321	MSKCC	GRCh37	13	29041721	29041721	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	66	516	0	ENST00000282397.4:c.98A>C	p.Glu33Ala	p.E33A	ENST00000282397	NM_002019.4	33	gAa/gCa																																																																															
BTK	695	MSKCC	GRCh37	X	100612572	100612572	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	60	565	0	ENST00000308731.7:c.1103-1G>T		p.X368_splice	ENST00000308731	NM_000061.2	368																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	40	219	0				ENST00000310581	NM_198253.2																																																																																	
RAF1	5894	MSKCC	GRCh37	3	12647737	12647737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	58	343	0	ENST00000251849.4:c.643C>T	p.Arg215Cys	p.R215C	ENST00000251849	NM_002880.3	215	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	264	730	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870888	12870888	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	86	274	0	ENST00000228872.4:c.115G>T	p.Glu39Ter	p.E39*	ENST00000228872	NM_004064.3	39	Gaa/Taa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67358571	67358571	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	159	459	0	ENST00000327367.4:c.79G>T	p.Glu27Ter	p.E27*	ENST00000327367	NM_005902.3	27	Gag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29664541	29664541	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	241	538	0	ENST00000358273.4:c.6583G>T	p.Glu2195Ter	p.E2195*	ENST00000358273	NM_001042492.2	2195	Gag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29684058	29684058	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	212	540	1	ENST00000358273.4:c.7819G>T	p.Glu2607Ter	p.E2607*	ENST00000358273	NM_001042492.2	2607	Gaa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29685577	29685578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTGTGCAGAGTGTGGTGTACCATGAAGAATCCCCACCACAATACCAAACATCTTACCTGCAAAG			P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	70	554	0	ENST00000358273.4:c.8052_8113+2dup		p.I2684fs	ENST00000358273	NM_001042492.2	2684	att/aTTGTGCAGAGTGTGGTGTACCATGAAGAATCCCCACCACAATACCAAACATCTTACCTGCAAAGtt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763218	59763218	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	341	574	0	ENST00000259008.2:c.2884A>G	p.Ile962Val	p.I962V	ENST00000259008	NM_032043.2	962	Att/Gtt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543864	212543864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	134	345	0	ENST00000342788.4:c.1535G>T	p.Cys512Phe	p.C512F	ENST00000342788	NM_005235.2	512	tGt/tTt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5123104	5123104	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	193	505	0	ENST00000381652.3:c.3160A>T	p.Ser1054Cys	p.S1054C	ENST00000381652	NM_004972.3	1054	Agt/Tgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971109	21971121	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCACGGGTCGG	GTGCACGGGTCGG	-			P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	111	378	0	ENST00000304494.5:c.237_249del	p.Arg80ThrfsTer62	p.R80Tfs*62	ENST00000304494	NM_000077.4	79	acCCGACCCGTGCAC/ac																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	143	338	0				ENST00000310581	NM_198253.2																																																																																	
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0037745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	527	598	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
MSI1	4440	MSKCC	GRCh37	12	120784077	120784077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	239	790	1	ENST00000257552.2:c.908G>A	p.Arg303His	p.R303H	ENST00000257552	NM_002442.3	303	cGc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55224232	55224232	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	263	474	0	ENST00000275493.2:c.1013A>G	p.Asn338Ser	p.N338S	ENST00000275493	NM_005228.3	338	aAc/aGc																																																																															
MED12	9968	MSKCC	GRCh37	X	70339169	70339256	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCTTCCCCCTTCCCCTAAGGAAAAAACAACTAAACGCCGCTTTCCTGCCTCAGGATGAACTGACGGCCTTGAATGTAAAACAAGGTT	CCCTTCCCCCTTCCCCTAAGGAAAAAACAACTAAACGCCGCTTTCCTGCCTCAGGATGAACTGACGGCCTTGAATGTAAAACAAGGTT	-			P-0037745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	169	396	0	ENST00000374080.3:c.100-54_133del		p.X34_splice	ENST00000374080		34																																																																																
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	262	576	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231707	66231707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	90	350	1	ENST00000273854.3:c.1993G>A	p.Glu665Lys	p.E665K	ENST00000273854	NM_004439.5	665	Gaa/Aaa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920503	134920503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	224	534	0	ENST00000398015.3:c.2318C>T	p.Thr773Ile	p.T773I	ENST00000398015	NM_004441.4	773	aCc/aTc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609994	81609994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	135	256	2	ENST00000298171.2:c.1592G>A	p.Arg531Gln	p.R531Q	ENST00000298171	NM_000369.2	531	cGg/cAg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1424958105		P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	144	320	0	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892164	9892164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	215	421	0	ENST00000330684.3:c.2326G>A	p.Asp776Asn	p.D776N	ENST00000330684	NM_001134407.1	776	Gac/Aac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259493	89259493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	181	338	0	ENST00000336596.2:c.637C>T	p.Pro213Ser	p.P213S	ENST00000336596	NM_005233.5	213	Cca/Tca																																																																															
ABL1	25	MSKCC	GRCh37	9	133761036	133761036	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1456042173		P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	316	594	3	ENST00000318560.5:c.3359C>T	p.Ser1120Leu	p.S1120L	ENST00000318560	NM_005157.4	1120	tCg/tTg																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735422	204735422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	159	328	0	ENST00000302823.3:c.223C>T	p.Arg75Trp	p.R75W	ENST00000302823	NM_005214.4	75	Cgg/Tgg																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983275	149983275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	191	434	0	ENST00000253339.5:c.2983C>T	p.Arg995Cys	p.R995C	ENST00000253339		995	Cgc/Tgc																																																																															
NPM1	4869	MSKCC	GRCh37	5	170818714	170818714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	174	352	0	ENST00000296930.5:c.263C>T	p.Ser88Phe	p.S88F	ENST00000296930	NM_002520.6	88	tCc/tTc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713514	30713514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	212	417	0	ENST00000359013.4:c.914C>T	p.Pro305Leu	p.P305L	ENST00000359013	NM_001024847.2	305	cCc/cTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830919	72830919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	205	461	0	ENST00000268489.5:c.5662G>A	p.Glu1888Lys	p.E1888K	ENST00000268489	NM_006885.3	1888	Gaa/Aaa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2131787	2131787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	282	546	0	ENST00000219476.3:c.3802C>T	p.Arg1268Cys	p.R1268C	ENST00000219476	NM_000548.3	1268	Cgc/Tgc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066618	94066618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	166	374	0	ENST00000369303.4:c.1141C>T	p.Pro381Ser	p.P381S	ENST00000369303	NM_004440.3	381	Ccc/Tcc																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868438023		P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	426	779	1	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509438	106509438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	251	530	0	ENST00000359195.3:c.1432G>A	p.Gly478Arg	p.G478R	ENST00000359195	NM_002649.2	478	Gga/Aga																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741578	145741578	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	402	801	1	ENST00000428558.2:c.925C>T	p.Gln309Ter	p.Q309*	ENST00000428558	NM_004260.3	309	Cag/Tag																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362506	40362506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	224	441	1	ENST00000293328.3:c.1690C>T	p.Pro564Ser	p.P564S	ENST00000293328	NM_012448.3	564	Cca/Tca																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156523	55156523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	192	401	0	ENST00000257290.5:c.2924C>T	p.Pro975Leu	p.P975L	ENST00000257290	NM_006206.4	975	cCt/cTt																																																																															
RET	5979	MSKCC	GRCh37	10	43601944	43601944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	402	723	0	ENST00000355710.3:c.988C>T	p.Arg330Trp	p.R330W	ENST00000355710	NM_020975.4	330	Cgg/Tgg																																																																															
TET1	80312	MSKCC	GRCh37	10	70406105	70406105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	218	492	0	ENST00000373644.4:c.3619C>T	p.Pro1207Ser	p.P1207S	ENST00000373644	NM_030625.2	1207	Cct/Tct																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163802	152163802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	174	398	1	ENST00000206249.3:c.523G>A	p.Ala175Thr	p.A175T	ENST00000206249	NM_000125.3	175	Gct/Act																																																																															
TET2	54790	MSKCC	GRCh37	4	106196349	106196349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	102	259	1	ENST00000380013.4:c.4682C>T	p.Ser1561Phe	p.S1561F	ENST00000380013	NM_001127208.2	1561	tCt/tTt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16068396	16068396	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150910818		P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	10	41	0	ENST00000268712.3:c.515C>T	p.Ser172Leu	p.S172L	ENST00000268712	NM_006311.3	172	tCa/tTa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212114	36212114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	303	514	0	ENST00000222270.7:c.1865C>T	p.Pro622Leu	p.P622L	ENST00000222270	NM_014727.1	622	cCc/cTc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164709	36164709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	351	620	0	ENST00000300305.3:c.1166C>T	p.Ser389Leu	p.S389L	ENST00000300305		389	tCg/tTg																																																																															
ATM	472	MSKCC	GRCh37	11	108121525	108121525	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	199	338	0	ENST00000278616.4:c.1333C>T	p.Gln445Ter	p.Q445*	ENST00000278616	NM_000051.3	445	Caa/Taa																																																																															
CDH1	999	MSKCC	GRCh37	16	68835741	68835741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	236	589	1	ENST00000261769.5:c.332C>T	p.Ser111Phe	p.S111F	ENST00000261769	NM_004360.3	111	tCc/tTc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49932976	49932976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	273	559	0	ENST00000296474.3:c.2968C>T	p.Pro990Ser	p.P990S	ENST00000296474	NM_002447.2	990	Cct/Tct																																																																															
ROS1	6098	MSKCC	GRCh37	6	117707020	117707020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	134	378	0	ENST00000368508.3:c.2130G>A	p.Met710Ile	p.M710I	ENST00000368508	NM_002944.2	710	atG/atA																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741825	17741825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	122	226	0	ENST00000250003.3:c.496G>A	p.Asp166Asn	p.D166N	ENST00000250003	NM_002478.4	166	Gac/Aac																																																																															
FANCA	2175	MSKCC	GRCh37	16	89831350	89831350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	279	501	0	ENST00000389301.3:c.2726C>T	p.Ser909Phe	p.S909F	ENST00000389301	NM_000135.2	909	tCt/tTt																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811741	102811741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	257	490	0	ENST00000307046.8:c.443G>A	p.Arg148Lys	p.R148K	ENST00000307046	NM_001111285.1	148	aGa/aAa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412118	63412118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	346	391	0	ENST00000330258.3:c.1049G>A	p.Arg350Lys	p.R350K	ENST00000330258	NM_152424.3	350	aGa/aAa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	761	273	0				ENST00000310581	NM_198253.2																																																																																	
NCOR1	9611	MSKCC	GRCh37	17	16068441	16068441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	33	71	0	ENST00000268712.3:c.470C>T	p.Ser157Phe	p.S157F	ENST00000268712	NM_006311.3	157	tCc/tTc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554204	63554204	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	221	513	0	ENST00000307078.5:c.535C>T	p.Gln179Ter	p.Q179*	ENST00000307078	NM_004655.3	179	Cag/Tag																																																																															
ALK	238	MSKCC	GRCh37	2	29606651	29606651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	228	459	0	ENST00000389048.3:c.1229G>A	p.Gly410Glu	p.G410E	ENST00000389048	NM_004304.4	410	gGa/gAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436643	49436643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	290	508	0	ENST00000301067.7:c.5663C>T	p.Ser1888Phe	p.S1888F	ENST00000301067	NM_003482.3	1888	tCc/tTc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11182068	11182068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	218	505	0	ENST00000361445.4:c.6778C>T	p.Leu2260Phe	p.L2260F	ENST00000361445	NM_004958.3	2260	Ctt/Ttt																																																																															
CD79B	974	MSKCC	GRCh37	17	62009599	62009599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	321	632	0	ENST00000392795.3:c.23C>T	p.Pro8Leu	p.P8L	ENST00000392795	NM_001039933.1	8	cCt/cTt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94124474	94124474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	82	309	0	ENST00000369303.4:c.109G>A	p.Asp37Asn	p.D37N	ENST00000369303	NM_004440.3	37	Gat/Aat																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775598	9775598	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	206	462	0	ENST00000377346.4:c.142-1G>A		p.X48_splice	ENST00000377346	NM_005026.3	48																																																																																
CSF3R	1441	MSKCC	GRCh37	1	36932884	36932884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	308	633	1	ENST00000361632.4:c.1987C>T	p.Pro663Ser	p.P663S	ENST00000361632		663	Cca/Tca																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166644	118166644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	120	234	0	ENST00000369448.3:c.1154C>T	p.Pro385Leu	p.P385L	ENST00000369448	NM_017709.3	385	cCt/cTt																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551793	150551793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	50	74	0	ENST00000369026.2:c.214G>A	p.Asp72Asn	p.D72N	ENST00000369026	NM_021960.4	72	Gac/Aac																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740131	162740131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	185	423	1	ENST00000367921.3:c.1333C>T	p.Leu445Phe	p.L445F	ENST00000367921	NM_006182.2	445	Ctt/Ttt																																																																															
NUF2	83540	MSKCC	GRCh37	1	163295959	163295959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	151	405	0	ENST00000271452.3:c.118C>T	p.Pro40Ser	p.P40S	ENST00000271452	NM_145697.2	40	Cca/Tca																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716236	243716236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	138	377	0	ENST00000263826.5:c.958G>A	p.Asp320Asn	p.D320N	ENST00000263826	NM_005465.4	320	Gat/Aat																																																																															
AKT3	10000	MSKCC	GRCh37	1	243801011	243801011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	102	333	0	ENST00000263826.5:c.463G>A	p.Gly155Ser	p.G155S	ENST00000263826	NM_005465.4	155	Ggt/Agt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64132791	64132791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	275	559	0	ENST00000334205.4:c.925C>A	p.Leu309Met	p.L309M	ENST00000334205	NM_003942.2	309	Ctg/Atg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939813	71939814	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	322	732	1	ENST00000298229.2:c.440_441delinsTT	p.Ser147Phe	p.S147F	ENST00000298229	NM_001567.3	147	tCC/tTT																																																																															
PGR	5241	MSKCC	GRCh37	11	100962563	100962563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	174	407	0	ENST00000325455.5:c.1834G>A	p.Asp612Asn	p.D612N	ENST00000325455	NM_001202474.3	612	Gat/Aat																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343883	118343883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	175	328	0	ENST00000534358.1:c.2009C>T	p.Ser670Phe	p.S670F	ENST00000534358	NM_005933.3	670	tCt/tTt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12037443	12037444	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	224	426	1	ENST00000396373.4:c.1074_1075delinsTT	p.Arg359Ter	p.R359*	ENST00000396373	NM_001987.4	358	atCCga/atTTga																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945094	31945094	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	254	577	4	ENST00000340398.3:c.7C>T	p.Arg3Ter	p.R3*	ENST00000340398	NM_001013699.2	3	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427471	49427471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	290	681	1	ENST00000301067.7:c.11017C>T	p.Leu3673Phe	p.L3673F	ENST00000301067	NM_003482.3	3673	Ctt/Ttt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865840	57865840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	157	399	0	ENST00000228682.2:c.3317C>T	p.Ala1106Val	p.A1106V	ENST00000228682	NM_005269.2	1106	gCc/gTc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856350	111856350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	42	54	1	ENST00000341259.2:c.401C>T	p.Ser134Phe	p.S134F	ENST00000341259	NM_005475.2	134	tCc/tTc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112892448	112892448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	165	385	0	ENST00000351677.2:c.606G>A	p.Met202Ile	p.M202I	ENST00000351677	NM_002834.3	202	atG/atA																																																																															
POLE	5426	MSKCC	GRCh37	12	133202713	133202713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	212	458	0	ENST00000320574.5:c.6521C>T	p.Ser2174Phe	p.S2174F	ENST00000320574	NM_006231.2	2174	tCc/tTc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557441	21557441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	218	442	0	ENST00000382592.4:c.2404G>A	p.Asp802Asn	p.D802N	ENST00000382592	NM_014572.2	802	Gat/Aat																																																																															
FLT1	2321	MSKCC	GRCh37	13	28908188	28908188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	165	359	0	ENST00000282397.4:c.2567G>A	p.Arg856Gln	p.R856Q	ENST00000282397	NM_002019.4	856	cGg/cAg																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281893	49281893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	229	488	0	ENST00000282018.3:c.940G>A	p.Asp314Asn	p.D314N	ENST00000282018	NM_020377.2	314	Gac/Aac																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337646	73337646	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	87	162	0	ENST00000377767.4:c.2070del	p.Lys690AsnfsTer47	p.K690Nfs*47	ENST00000377767	NM_014953.3	690	aaA/aa																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643441	38643441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	207	419	0	ENST00000299084.4:c.911C>T	p.Ser304Leu	p.S304L	ENST00000299084	NM_152594.2	304	tCa/tTa																																																																															
MGA	23269	MSKCC	GRCh37	15	42041728	42041728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	170	318	0	ENST00000219905.7:c.5923C>T	p.Pro1975Ser	p.P1975S	ENST00000219905	NM_001164273.1	1975	Cca/Tca																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88669502	88669502	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	184	352	0	ENST00000360948.2:c.1396G>A	p.Gly466Ser	p.G466S	ENST00000360948	NM_001012338.2	466	Ggt/Agt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639279	3639279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	308	730	0	ENST00000294008.3:c.4360C>T	p.Pro1454Ser	p.P1454S	ENST00000294008	NM_032444.2	1454	Ccc/Tcc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3801806	3801806	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	168	345	0	ENST00000262367.5:c.3700T>A	p.Tyr1234Asn	p.Y1234N	ENST00000262367	NM_004380.2	1234	Tat/Aat																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3823810	3823810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	218	566	1	ENST00000262367.5:c.2405C>T	p.Ser802Phe	p.S802F	ENST00000262367	NM_004380.2	802	tCc/tTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943649	9943649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	272	640	0	ENST00000330684.3:c.1292G>A	p.Arg431Lys	p.R431K	ENST00000330684	NM_001134407.1	431	aGg/aAg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641514	23641514	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	201	511	0	ENST00000261584.4:c.1961T>A	p.Ile654Asn	p.I654N	ENST00000261584	NM_024675.3	654	aTt/aAt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644847	67644847	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	235	500	0	ENST00000264010.4:c.112T>C	p.Cys38Arg	p.C38R	ENST00000264010	NM_006565.3	38	Tgc/Cgc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89846364	89846364	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	232	519	0	ENST00000389301.3:c.1628C>T	p.Pro543Leu	p.P543L	ENST00000389301	NM_000135.2	543	cCc/cTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29559894	29559894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	109	195	0	ENST00000358273.4:c.3491C>T	p.Ser1164Phe	p.S1164F	ENST00000358273	NM_001042492.2	1164	tCc/tTc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40441463	40441464	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	245	639	0	ENST00000345506.4:c.34_35delinsAA	p.Gly12Lys	p.G12K	ENST00000345506	NM_003152.3	12	GGa/AAa																																																																															
YES1	7525	MSKCC	GRCh37	18	742996	742996	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	190	389	0	ENST00000314574.4:c.982A>G	p.Arg328Gly	p.R328G	ENST00000314574	NM_005433.3	328	Aga/Gga																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10267073	10267073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	138	350	0	ENST00000340748.4:c.1345C>T	p.Leu449Phe	p.L449F	ENST00000340748		449	Ctt/Ttt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098437	11098437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	174	343	0	ENST00000344626.4:c.955C>T	p.Pro319Ser	p.P319S	ENST00000344626	NM_003072.3	319	Cca/Tca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302436	15302436	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	400	738	0	ENST00000263388.2:c.835C>T	p.Gln279Ter	p.Q279*	ENST00000263388	NM_000435.2	279	Cag/Tag																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350014	15350015	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	375	871	0	ENST00000263377.2:c.3637_3638delinsTT	p.Pro1213Phe	p.P1213F	ENST00000263377	NM_058243.2	1213	CCc/TTc																																																																															
AXL	558	MSKCC	GRCh37	19	41727878	41727878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	361	707	0	ENST00000301178.4:c.503C>T	p.Pro168Leu	p.P168L	ENST00000301178	NM_021913.4	168	cCc/cTc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383095	42383095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	209	544	0	ENST00000221972.3:c.115C>T	p.Pro39Ser	p.P39S	ENST00000221972	NM_021601.3	39	Cca/Tca																																																																															
ERF	2077	MSKCC	GRCh37	19	42753199	42753200	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	330	721	0	ENST00000222329.4:c.1064_1065delinsTT	p.Pro355Leu	p.P355L	ENST00000222329	NM_006494.2	355	cCC/cTT																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470970	25470970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	371	636	0	ENST00000264709.3:c.791C>T	p.Pro264Leu	p.P264L	ENST00000264709	NM_175629.2	264	cCc/cTc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212578324	212578325	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	101	361	2	ENST00000342788.4:c.932_933delinsTT	p.Ser311Phe	p.S311F	ENST00000342788	NM_005235.2	311	tCC/tTT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212587234	212587234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	124	329	0	ENST00000342788.4:c.767G>T	p.Gly256Val	p.G256V	ENST00000342788	NM_005235.2	256	gGa/gTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419971	41419971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	261	514	1	ENST00000373198.4:c.350C>T	p.Pro117Leu	p.P117L	ENST00000373198	NM_133170.3	117	cCa/cTa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485395	57485395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	142	235	0	ENST00000371085.3:c.977C>T	p.Pro326Leu	p.P326L	ENST00000371085	NM_000516.4	326	cCc/cTc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47144872	47144872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	175	386	0	ENST00000409792.3:c.4881G>A	p.Met1627Ile	p.M1627I	ENST00000409792	NM_014159.6	1627	atG/atA																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163317	47163317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	153	300	0	ENST00000409792.3:c.2809C>T	p.Pro937Ser	p.P937S	ENST00000409792	NM_014159.6	937	Cct/Tct																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72897392	72897392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	225	435	0	ENST00000325599.8:c.100G>A	p.Glu34Lys	p.E34K	ENST00000325599	NM_018130.2	34	Gag/Aag																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119582349	119582349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	174	261	0	ENST00000316626.5:c.1052C>T	p.Ser351Leu	p.S351L	ENST00000316626		351	tCa/tTa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134825364	134825364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	184	423	0	ENST00000398015.3:c.880C>T	p.Pro294Ser	p.P294S	ENST00000398015	NM_004441.4	294	Cct/Tct																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1805521	1805521	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	336	697	0	ENST00000260795.2:c.1033A>G	p.Ile345Val	p.I345V	ENST00000260795		345	Att/Gtt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143094828	143094828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	150	302	0	ENST00000262992.4:c.1316C>T	p.Ser439Phe	p.S439F	ENST00000262992	NM_001101669.1	439	tCt/tTt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295304	1295304	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1185	169	362	2				ENST00000310581	NM_198253.2																																																																																	
APC	324	MSKCC	GRCh37	5	112173339	112173339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	99	268	0	ENST00000257430.4:c.2048C>A	p.Thr683Asn	p.T683N	ENST00000257430	NM_000038.5	683	aCt/aAt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149447826	149447826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	258	625	2	ENST00000286301.3:c.1578G>A	p.Met526Ile	p.M526I	ENST00000286301	NM_005211.3	526	atG/atA																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163338	32163338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	446	839	0	ENST00000375023.3:c.5888C>T	p.Ser1963Phe	p.S1963F	ENST00000375023	NM_004557.3	1963	tCc/tTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163449	32163449	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	343	652	0	ENST00000375023.3:c.5777A>G	p.Asn1926Ser	p.N1926S	ENST00000375023	NM_004557.3	1926	aAc/aGc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120579	94120579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	153	301	0	ENST00000369303.4:c.472G>A	p.Gly158Ser	p.G158S	ENST00000369303	NM_004440.3	158	Ggt/Agt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001379	150001379	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	196	427	0	ENST00000253339.5:c.2225T>G	p.Leu742Arg	p.L742R	ENST00000253339		742	cTt/cGt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528450	157528450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	252	522	1	ENST00000346085.5:c.6175C>T	p.Pro2059Ser	p.P2059S	ENST00000346085	NM_020732.3	2059	Ccg/Tcg																																																																															
SMO	6608	MSKCC	GRCh37	7	128848632	128848632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	319	703	0	ENST00000249373.3:c.1297C>T	p.His433Tyr	p.H433Y	ENST00000249373	NM_005631.4	433	Cac/Tac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8492910	8492910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	203	434	0	ENST00000356435.5:c.2419G>A	p.Gly807Arg	p.G807R	ENST00000356435		807	Gga/Aga																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98238318	98238319	+	stop_gained,splice_region_variant	Nonsense_Mutation	DNP	GG	GG	AA			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	194	345	0	ENST00000331920.6:c.1725_1726delinsTT	p.Gln576Ter	p.Q576*	ENST00000331920	NM_000264.3	575	ctCCag/ctTTag																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101904961	101904961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	129	254	0	ENST00000374994.4:c.949C>T	p.His317Tyr	p.H317Y	ENST00000374994	NM_004612.2	317	Cac/Tac																																																																															
ATRX	546	MSKCC	GRCh37	X	76939186	76939187	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	183	276	0	ENST00000373344.5:c.1561_1562delinsTT	p.Pro521Phe	p.P521F	ENST00000373344	NM_000489.3	521	CCt/TTt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128199975	128199976	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	312	610	0	ENST00000341105.2:c.1329_1330delinsT	p.Pro444ArgfsTer33	p.P444Rfs*33	ENST00000341105	NM_032638.4	443	ctCCcg/ctTcg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	215	763	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
ATRX	546	MSKCC	GRCh37	X	76907822	76907822	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	26	216	1	ENST00000373344.5:c.4339G>T	p.Glu1447Ter	p.E1447*	ENST00000373344	NM_000489.3	1447	Gag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	96	683	2	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469945	25469945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	226	838	3	ENST00000264709.3:c.1097G>A	p.Arg366His	p.R366H	ENST00000264709	NM_175629.2	366	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023589	27023590	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTCCCCGAGAGGTGGCA			P-0041672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	40	521	0	ENST00000324856.7:c.700_716dup	p.Gly240ArgfsTer129	p.G240Rfs*129	ENST00000324856	NM_006015.4	232	agc/agCTCCCCGAGAGGTGGCAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690797	89690801	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TTTTA	TTTTA	-			P-0041674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	66	336	0	ENST00000371953.3:c.210-6_210-2del		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																																
BCL2	596	MSKCC	GRCh37	18	60985730	60985730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	39	242	0	ENST00000333681.4:c.170C>A	p.Pro57His	p.P57H	ENST00000333681		57	cCc/cAc																																																																															
MYC	4609	MSKCC	GRCh37	8	128752979	128752979	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	63	562	0	ENST00000377970.2:c.1140G>C	p.Gln380His	p.Q380H	ENST00000377970	NM_002467.4	380	caG/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0041732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	259	654	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	297	366	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640564	3640564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	73	826	1	ENST00000294008.3:c.3075G>T	p.Trp1025Cys	p.W1025C	ENST00000294008	NM_032444.2	1025	tgG/tgT																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032071	26032071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	26	397	0	ENST00000244661.2:c.218G>A	p.Arg73Gln	p.R73Q	ENST00000244661	NM_003537.3	73	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	143	353	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	76	351	0	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	90	442	1	ENST00000380152.3:c.5351delA	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	73	302	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	227	736	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	185	710	1	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	224	683	2	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	74	320	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	25	41	0	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	38	198	1	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857895	9857895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	196	593	2	ENST00000330684.3:c.3506G>A	p.Arg1169Gln	p.R1169Q	ENST00000330684	NM_001134407.1	1169	cGg/cAg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165213	47165213	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	61	269	0	ENST00000409792.3:c.913delA	p.Thr305GlnfsTer35	p.T305Qfs*35	ENST00000409792	NM_014159.6	305	Aca/ca																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	52	304	1	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	83	335	0	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	147	543	1	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																															
EP300	2033	MSKCC	GRCh37	22	41545939	41545939	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	247	736	0	ENST00000263253.7:c.2554C>T	p.Gln852Ter	p.Q852*	ENST00000263253	NM_001429.3	852	Cag/Tag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272337	15272337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs776990686		P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	255	747	5	ENST00000263388.2:c.6102del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2034	ccC/cc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683223	88683223	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113849804		P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	111	498	0	ENST00000372037.3:c.1433G>A	p.Arg478His	p.R478H	ENST00000372037	NM_004329.2	478	cGt/cAt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553588	106553588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	134	398	0	ENST00000369096.4:c.1553C>T	p.Thr518Met	p.T518M	ENST00000369096	NM_001198.3	518	aCg/aTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057744	180057744	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138831198		P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	208	717	0	ENST00000261937.6:c.211G>A	p.Gly71Arg	p.G71R	ENST00000261937	NM_182925.4	71	Gga/Aga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265479	152265479	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766779326		P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	149	545	0	ENST00000206249.3:c.932C>T	p.Thr311Met	p.T311M	ENST00000206249	NM_000125.3	311	aCg/aTg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246532	41246532	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	113	630	4	ENST00000357654.3:c.1016del	p.Lys339ArgfsTer2	p.K339Rfs*2	ENST00000357654	NM_007294.3	339	aAg/ag																																																																															
CIC	23152	MSKCC	GRCh37	19	42795609	42795609	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	212	795	2	ENST00000575354.2:c.2694del	p.Ala900ProfsTer24	p.A900Pfs*24	ENST00000575354	NM_015125.3	897	Ccc/cc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332152	70332153	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	61	227	3	ENST00000373644.4:c.65dup	p.Lys23GlufsTer37	p.K23Efs*37	ENST00000373644	NM_030625.2	19	-/A																																																																															
B2M	567	MSKCC	GRCh37	15	45003782	45003782	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	170	457	0	ENST00000558401.1:c.38T>C	p.Leu13Pro	p.L13P	ENST00000558401	NM_004048.2	13	cTc/cCc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	166	621	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733375	85733377	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	106	430	0	ENST00000370580.1:c.635_637del	p.Glu212del	p.E212del	ENST00000370580	NM_003921.4	212	gAAGga/gga																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399278	139399278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	273	666	2	ENST00000277541.6:c.4865G>A	p.Arg1622His	p.R1622H	ENST00000277541	NM_017617.3	1622	cGc/cAc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652397	48652397	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	189	405	4	ENST00000376670.3:c.1073del	p.Pro358GlnfsTer74	p.P358Qfs*74	ENST00000376670	NM_002049.3	356	ggC/gg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	147	562	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686962	37686962	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	175	525	1	ENST00000447079.4:c.3871del	p.Gln1291ArgfsTer3	p.Q1291Rfs*3	ENST00000447079	NM_015083.1	1289	gCc/gc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658869	3658869	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	129	570	0	ENST00000294008.3:c.97G>A	p.Asp33Asn	p.D33N	ENST00000294008	NM_032444.2	33	Gac/Aac																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513037	106513037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	57	211	0	ENST00000359195.3:c.2051G>A	p.Arg684His	p.R684H	ENST00000359195	NM_002649.2	684	cGt/cAt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271304	18271304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	240	722	1	ENST00000222254.8:c.346G>A	p.Glu116Lys	p.E116K	ENST00000222254	NM_005027.3	116	Gag/Aag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44732820	44732820	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	76	283	0	ENST00000377967.4:c.23T>C	p.Leu8Pro	p.L8P	ENST00000377967	NM_021140.2	8	cTc/cCc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434356	121434356	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	193	667	3	ENST00000257555.6:c.1124del	p.Gly375AlafsTer9	p.G375Afs*9	ENST00000257555		374	Ggg/gg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9776086	9776086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	197	715	4	ENST00000377346.4:c.550C>T	p.Arg184Trp	p.R184W	ENST00000377346	NM_005026.3	184	Cgg/Tgg																																																																															
RAC2	5880	MSKCC	GRCh37	22	37637694	37637694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	183	694	1	ENST00000249071.6:c.40G>A	p.Val14Met	p.V14M	ENST00000249071	NM_002872.4	14	Gtg/Atg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133898	41133898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	107	352	0	ENST00000379561.5:c.1730del	p.Gly577AlafsTer5	p.G577Afs*5	ENST00000379561	NM_002015.3	577	gGc/gc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619031	37619031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	185	612	0	ENST00000447079.4:c.707G>A	p.Ser236Asn	p.S236N	ENST00000447079	NM_015083.1	236	aGc/aAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436102	49436102	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	65	418	0	ENST00000301067.7:c.5879del	p.Gly1960AlafsTer87	p.G1960Afs*87	ENST00000301067	NM_003482.3	1960	gGc/gc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121604	2121604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	225	758	0	ENST00000219476.3:c.1933G>A	p.Val645Ile	p.V645I	ENST00000219476	NM_000548.3	645	Gtc/Atc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2189772	2189772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	280	761	0	ENST00000398665.3:c.242C>T	p.Ala81Val	p.A81V	ENST00000398665	NM_032482.2	81	gCc/gTc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163318754	163318755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	98	349	0	ENST00000271452.3:c.1150dup	p.Arg384LysfsTer6	p.R384Kfs*6	ENST00000271452	NM_145697.2	382	gaa/gAaa																																																																															
ABL1	25	MSKCC	GRCh37	9	133760724	133760724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	240	885	0	ENST00000318560.5:c.3047G>A	p.Arg1016His	p.R1016H	ENST00000318560	NM_005157.4	1016	cGc/cAc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605204	46605204	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1459319402		P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	102	335	6	ENST00000263734.3:c.1421G>C	p.Ser474Thr	p.S474T	ENST00000263734	NM_001430.4	474	aGc/aCc																																																																															
CBFB	865	MSKCC	GRCh37	16	67132621	67132623	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	92	474	0	ENST00000412916.2:c.508_510delCAA	p.Gln170del	p.Q170del	ENST00000412916		168	agACAa/aga																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748369	162748369	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	29	293	0	ENST00000367921.3:c.2284-1G>T		p.X762_splice	ENST00000367921	NM_006182.2	762																																																																																
CDKN2B	1030	MSKCC	GRCh37	9	22006078	22006078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	179	385	0	ENST00000276925.6:c.325C>T	p.Arg109Cys	p.R109C	ENST00000276925	NM_004936.3	109	Cgc/Tgc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974816	15974816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	42	372	0	ENST00000268712.3:c.4059G>C	p.Glu1353Asp	p.E1353D	ENST00000268712	NM_006311.3	1353	gaG/gaC																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38272356	38272356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	160	596	1	ENST00000425967.3:c.2011G>A	p.Ala671Thr	p.A671T	ENST00000425967	NM_001174067.1	671	Gca/Aca																																																																															
MTOR	2475	MSKCC	GRCh37	1	11317061	11317061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	162	562	1	ENST00000361445.4:c.433G>A	p.Val145Met	p.V145M	ENST00000361445	NM_004958.3	145	Gtg/Atg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598307	28598307	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	265	828	1	ENST00000253063.3:c.279C>A	p.Phe93Leu	p.F93L	ENST00000253063	NM_031459.4	93	ttC/ttA																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115276732	115276732	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	81	305	0	ENST00000438362.2:c.727T>G	p.Phe243Val	p.F243V	ENST00000438362	NM_001242891.1	243	Ttt/Gtt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748368	162748369	+	splice_acceptor_variant	Splice_Site	DNP	AG	AG	GT			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	29	292	1	ENST00000367921.3:c.2284-2_2284-1delinsGT		p.X762_splice	ENST00000367921	NM_006182.2	762																																																																																
ELF3	1999	MSKCC	GRCh37	1	201981563	201981565	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TGG	TGG	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	301	805	0	ENST00000359651.3:c.478+1_478+3del		p.X160_splice	ENST00000359651		160																																																																																
ELF3	1999	MSKCC	GRCh37	1	201981825	201981825	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	112	844	0	ENST00000359651.3:c.536A>G	p.Tyr179Cys	p.Y179C	ENST00000359651		179	tAc/tGc																																																																															
IL10	3586	MSKCC	GRCh37	1	206944287	206944287	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs150423829		P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	88	474	0	ENST00000423557.1:c.343A>T	p.Asn115Tyr	p.N115Y	ENST00000423557	NM_000572.2	115	Aac/Tac																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246670369	246670369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	113	408	0	ENST00000388985.4:c.151C>T	p.Arg51Cys	p.R51C	ENST00000388985		51	Cgc/Tgc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851679	63851679	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	174	527	1	ENST00000279873.7:c.2461del	p.His821IlefsTer61	p.H821Ifs*61	ENST00000279873	NM_032199.2	819	ctC/ct																																																																															
TET1	80312	MSKCC	GRCh37	10	70333879	70333879	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	72	350	0	ENST00000373644.4:c.1784A>T	p.Glu595Val	p.E595V	ENST00000373644	NM_030625.2	595	gAa/gTa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710984	114710984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	185	380	0	ENST00000543371.1:c.208C>T	p.Pro70Ser	p.P70S	ENST00000543371	NM_001198531.1	70	Cct/Tct																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589630	69589630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	55	104	0	ENST00000168712.1:c.223G>A	p.Asp75Asn	p.D75N	ENST00000168712	NM_002007.2	75	Gac/Aac																																																																															
ATM	472	MSKCC	GRCh37	11	108186814	108186814	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	79	417	0	ENST00000278616.4:c.6172T>A	p.Ser2058Thr	p.S2058T	ENST00000278616	NM_000051.3	2058	Tca/Aca																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344627	118344627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	46	420	0	ENST00000534358.1:c.2753G>A	p.Gly918Asp	p.G918D	ENST00000534358	NM_005933.3	918	gGt/gAt																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025564	1025564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	223	717	0	ENST00000358495.3:c.811C>T	p.Arg271Trp	p.R271W	ENST00000358495	NM_134424.2	271	Cgg/Tgg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489040	56489040	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	125	411	0	ENST00000267101.3:c.1860-1G>T		p.X620_splice	ENST00000267101	NM_001982.3	620																																																																																
GLI1	2735	MSKCC	GRCh37	12	57858642	57858642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	134	521	0	ENST00000228682.2:c.380G>A	p.Gly127Asp	p.G127D	ENST00000228682	NM_005269.2	127	gGc/gAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133240971	133240971	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	150	581	0	ENST00000320574.5:c.2546T>C	p.Leu849Pro	p.L849P	ENST00000320574	NM_006231.2	849	cTg/cCg																																																																															
BLM	641	MSKCC	GRCh37	15	91303446	91303446	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	104	358	0	ENST00000355112.3:c.1157T>C	p.Ile386Thr	p.I386T	ENST00000355112	NM_000057.2	386	aTt/aCt																																																																															
BLM	641	MSKCC	GRCh37	15	91347480	91347480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	137	509	0	ENST00000355112.3:c.3642G>T	p.Met1214Ile	p.M1214I	ENST00000355112	NM_000057.2	1214	atG/atT																																																																															
TSC2	7249	MSKCC	GRCh37	16	2110806	2110806	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	209	634	0	ENST00000219476.3:c.1111C>T	p.Gln371Ter	p.Q371*	ENST00000219476	NM_000548.3	371	Cag/Tag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658869	3658870	+	missense_variant	Missense_Mutation	DNP	CT	CT	TC			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	129	576	0	ENST00000294008.3:c.96_97delinsGA	p.Asp33Asn	p.D33N	ENST00000294008	NM_032444.2	32	gaAGac/gaGAac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3808042	3808042	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	48	340	0	ENST00000262367.5:c.3377T>A	p.Phe1126Tyr	p.F1126Y	ENST00000262367	NM_004380.2	1126	tTt/tAt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646303	23646303	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	151	578	1	ENST00000261584.4:c.1564C>A	p.Pro522Thr	p.P522T	ENST00000261584	NM_024675.3	522	Cca/Aca																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836979	89836979	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	230	650	2	ENST00000389301.3:c.2215C>A	p.Pro739Thr	p.P739T	ENST00000389301	NM_000135.2	739	Ccg/Acg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131333	17131333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	250	772	0	ENST00000285071.4:c.119G>T	p.Gly40Val	p.G40V	ENST00000285071	NM_144997.5	40	gGc/gTc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372032	45372032	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	98	401	0	ENST00000262160.6:c.1135+2T>C		p.X379_splice	ENST00000262160	NM_005901.5	379																																																																																
UPF1	5976	MSKCC	GRCh37	19	18961574	18961574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	185	608	1	ENST00000262803.5:c.707G>A	p.Arg236His	p.R236H	ENST00000262803	NM_002911.3	236	cGc/cAc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50921115	50921115	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	197	581	0	ENST00000440232.2:c.3235T>A	p.Phe1079Ile	p.F1079I	ENST00000440232	NM_002691.3	1079	Ttc/Atc																																																																															
ALK	238	MSKCC	GRCh37	2	29754856	29754856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	152	424	0	ENST00000389048.3:c.1079G>A	p.Arg360Lys	p.R360K	ENST00000389048	NM_004304.4	360	aGg/aAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877375	40877375	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	161	527	0	ENST00000373198.4:c.2321T>G	p.Leu774Arg	p.L774R	ENST00000373198	NM_133170.3	774	cTc/cGc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62324156	62324158	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGG	AGG	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	153	600	0	ENST00000508582.2:c.2728_2730del		p.X910_splice	ENST00000508582		910																																																																																
TMPRSS2	7113	MSKCC	GRCh37	21	42842589	42842590	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	244	652	0	ENST00000398585.3:c.1267dup	p.Ala423GlyfsTer21	p.A423Gfs*21	ENST00000398585	NM_001135099.1	423	gcc/gGcc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12641731	12641731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	153	489	0	ENST00000251849.4:c.910G>T	p.Gly304Cys	p.G304C	ENST00000251849	NM_002880.3	304	Ggc/Tgc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275240	41275240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	123	327	0	ENST00000349496.5:c.1406G>A	p.Arg469His	p.R469H	ENST00000349496	NM_001904.3	469	cGt/cAt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442539	52442539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	103	488	0	ENST00000460680.1:c.206C>T	p.Thr69Met	p.T69M	ENST00000460680	NM_004656.3	69	aCg/aTg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181431007	181431007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	227	712	0	ENST00000325404.1:c.859G>A	p.Ala287Thr	p.A287T	ENST00000325404	NM_003106.3	287	Gcc/Acc																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182681778	182681778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	127	445	0	ENST00000292782.4:c.280G>A	p.Ala94Thr	p.A94T	ENST00000292782	NM_020640.2	94	Gca/Aca																																																																															
BCL6	604	MSKCC	GRCh37	3	187447621	187447621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	142	652	2	ENST00000232014.4:c.572C>T	p.Pro191Leu	p.P191L	ENST00000232014	NM_001130845.1	191	cCg/cTg																																																																															
TP63	8626	MSKCC	GRCh37	3	189590666	189590666	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	87	421	0	ENST00000264731.3:c.1231T>A	p.Tyr411Asn	p.Y411N	ENST00000264731	NM_003722.4	411	Tat/Aat																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902622	1902622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	230	713	0	ENST00000382891.5:c.241G>A	p.Asp81Asn	p.D81N	ENST00000382891	NM_133335.3	81	Gat/Aat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521105	187521105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	137	439	1	ENST00000441802.2:c.12050G>A	p.Cys4017Tyr	p.C4017Y	ENST00000441802	NM_005245.3	4017	tGc/tAc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31409427	31409427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	81	348	0	ENST00000344624.3:c.3680C>T	p.Ala1227Val	p.A1227V	ENST00000344624		1227	gCg/gTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56170866	56170866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	74	251	0	ENST00000399503.3:c.1694G>A	p.Gly565Glu	p.G565E	ENST00000399503	NM_005921.1	565	gGa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112170646	112170646	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	68	246	0	ENST00000257430.4:c.1744-2A>T		p.X582_splice	ENST00000257430	NM_000038.5	582																																																																																
RAD50	10111	MSKCC	GRCh37	5	131953766	131953766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	47	226	0	ENST00000265335.6:c.3169C>T	p.His1057Tyr	p.H1057Y	ENST00000265335		1057	Cat/Tat																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158725	26158725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	117	439	0	ENST00000289316.2:c.328C>T	p.His110Tyr	p.H110Y	ENST00000289316	NM_138720.2	110	Cac/Tac																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163228	32163228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	197	881	0	ENST00000375023.3:c.5998G>A	p.Glu2000Lys	p.E2000K	ENST00000375023	NM_004557.3	2000	Gag/Aag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168946	32168946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	211	875	0	ENST00000375023.3:c.4087G>A	p.Ala1363Thr	p.A1363T	ENST00000375023	NM_004557.3	1363	Gca/Aca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242488	55242488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	109	409	0	ENST00000275493.2:c.2258C>T	p.Pro753Leu	p.P753L	ENST00000275493	NM_005228.3	753	cCg/cTg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148515137	148515137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	162	447	0	ENST00000320356.2:c.1072C>A	p.Arg358Ser	p.R358S	ENST00000320356	NM_004456.4	358	Cgc/Agc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205015	38205016	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	147	572	0	ENST00000317025.8:c.674dup	p.Asn225LysfsTer2	p.N225Kfs*2	ENST00000317025	NM_023034.1	225	aat/aaAt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964415	70964415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	134	426	2	ENST00000276594.2:c.1613G>A	p.Arg538His	p.R538H	ENST00000276594	NM_024504.3	538	cGt/cAt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090566	5090566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	88	284	0	ENST00000381652.3:c.2882G>A	p.Cys961Tyr	p.C961Y	ENST00000381652	NM_004972.3	961	tGc/tAc																																																																															
TEK	7010	MSKCC	GRCh37	9	27203007	27203007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	131	513	0	ENST00000380036.4:c.2099A>G	p.Lys700Arg	p.K700R	ENST00000380036	NM_000459.3	700	aAg/aGg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139563044	139563044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	241	791	0	ENST00000308874.7:c.116C>A	p.Pro39His	p.P39H	ENST00000308874		39	cCt/cAt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933540	39933540	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	204	350	0	ENST00000378444.4:c.1059del	p.Tyr354ThrfsTer24	p.Y354Tfs*24	ENST00000378444	NM_001123385.1	353	acC/ac																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748368	162748368	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	29	286	0	ENST00000367921.3:c.2284-2A>G		p.X762_splice	ENST00000367921	NM_006182.2	762																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	44	482	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0041900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	84	923	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0041900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	70	429	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216516	36216516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	196	1028	0	ENST00000222270.7:c.3779G>A	p.Arg1260His	p.R1260H	ENST00000222270	NM_014727.1	1260	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs780442292		P-0041714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	55	1074	0	ENST00000269305.4:c.401T>G	p.Phe134Cys	p.F134C	ENST00000269305	NM_001126112.2	134	tTt/tGt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73345058	73345058	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	31	450	0	ENST00000377767.4:c.1739G>T	p.Ser580Ile	p.S580I	ENST00000377767	NM_014953.3	580	aGt/aTt																																																																															
MED12	9968	MSKCC	GRCh37	X	70361160	70361160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	35	399	0	ENST00000374080.3:c.6348C>A	p.His2116Gln	p.H2116Q	ENST00000374080		2116	caC/caA																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519970		P-0041714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	28	635	0	ENST00000347630.2:c.393G>T	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgT																																																																															
MED12	9968	MSKCC	GRCh37	X	70361128	70361128	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	11	319	1	ENST00000374080.3:c.6316C>T	p.Gln2106Ter	p.Q2106*	ENST00000374080		2106	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0041060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	369	515	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313222	30313222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	52	546	0	ENST00000262643.3:c.916C>T	p.His306Tyr	p.H306Y	ENST00000262643	NM_001238.2	306	Cat/Tat																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858370	9858370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	55	435	0	ENST00000330684.3:c.3031C>T	p.Arg1011Trp	p.R1011W	ENST00000330684	NM_001134407.1	1011	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097101	11097101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	56	762	1	ENST00000344626.4:c.592G>A	p.Asp198Asn	p.D198N	ENST00000344626	NM_003072.3	198	Gac/Aac																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932055	36932055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	155	629	0	ENST00000361632.4:c.2414del	p.Pro805GlnfsTer45	p.P805Qfs*45	ENST00000361632		805	cCa/ca																																																																															
MPL	4352	MSKCC	GRCh37	1	43804989	43804989	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	80	411	0	ENST00000372470.3:c.439C>G	p.Pro147Ala	p.P147A	ENST00000372470	NM_005373.2	147	Cca/Gca																																																																															
ROS1	6098	MSKCC	GRCh37	6	117746745	117746746	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	113	325	0	ENST00000368508.3:c.74dup	p.Gln26AlafsTer7	p.Q26Afs*7	ENST00000368508	NM_002944.2	25	gtg/gtTg																																																																															
AR	367	MSKCC	GRCh37	X	66766381	66766381	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	74	99	0	ENST00000374690.3:c.1393G>T	p.Gly465Cys	p.G465C	ENST00000374690	NM_000044.3	465	Ggc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	115	474	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0041664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	311	467	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578378	7578395	+	inframe_deletion	In_Frame_Del	DEL	ATCTGAGCAGCGCTCATG	ATCTGAGCAGCGCTCATG	-			P-0041664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	154	731	0	ENST00000269305.4:c.535_552del	p.His179_Asp184del	p.H179_D184del	ENST00000269305	NM_001126112.2	179	CATGAGCGCTGCTCAGAT/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	36	446	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577497	7577497	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0041530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	97	743	0	ENST00000269305.4:c.782+2T>C		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
TGFBR1	7046	MSKCC	GRCh37	9	101900207	101900207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	24	411	0	ENST00000374994.4:c.641G>A	p.Gly214Asp	p.G214D	ENST00000374994	NM_004612.2	214	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	197	409	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0041543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	358	1029	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400777	72400777	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	75	268	0	ENST00000357731.5:c.394C>A	p.His132Asn	p.H132N	ENST00000357731	NM_173808.2	132	Cat/Aat																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910346	29910346	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	149	836	0	ENST00000376809.5:c.19delC	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000376809	NM_002116.7	6	Ccc/cc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468453	89468453	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	71	355	0	ENST00000336596.2:c.1987C>A	p.Gln663Lys	p.Q663K	ENST00000336596	NM_005233.5	663	Cag/Aag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376322	118376322	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	183	551	0	ENST00000534358.1:c.9715C>G	p.Pro3239Ala	p.P3239A	ENST00000534358	NM_005933.3	3239	Ccc/Gcc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549328	21549328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	136	845	2	ENST00000382592.4:c.2948G>A	p.Arg983Gln	p.R983Q	ENST00000382592	NM_014572.2	983	cGg/cAg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374908	45374908	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	215	523	0	ENST00000262160.6:c.935G>T	p.Cys312Phe	p.C312F	ENST00000262160	NM_005901.5	312	tGc/tTc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26029193	26029193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	40	358	0	ENST00000435504.4:c.157C>T	p.Leu53Phe	p.L53F	ENST00000435504		53	Ctt/Ttt																																																																															
BARD1	580	MSKCC	GRCh37	2	215645839	215645839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	106	595	0	ENST00000260947.4:c.759G>T	p.Gln253His	p.Q253H	ENST00000260947	NM_000465.2	253	caG/caT																																																																															
ATR	545	MSKCC	GRCh37	3	142211993	142211993	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	41	375	0	ENST00000350721.4:c.6059C>G	p.Ala2020Gly	p.A2020G	ENST00000350721	NM_001184.3	2020	gCa/gGa																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969991	161969991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	239	768	0	ENST00000366898.1:c.978G>T	p.Gln326His	p.Q326H	ENST00000366898	NM_004562.2	326	caG/caT																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231783	36231783	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1057519748		P-0041430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	9	433	0	ENST00000300305.3:c.601C>T	p.Arg201Ter	p.R201*	ENST00000300305		201	Cga/Tga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37646922	37646922	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	50	405	0	ENST00000447079.4:c.2048del	p.Pro683GlnfsTer70	p.P683Qfs*70	ENST00000447079	NM_015083.1	682	Ccc/cc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99482508	99482508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	118	415	0	ENST00000268035.6:c.3376C>A	p.Leu1126Ile	p.L1126I	ENST00000268035	NM_000875.3	1126	Ctc/Atc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144107	11144107	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	72	608	0	ENST00000344626.4:c.3688C>G	p.Gln1230Glu	p.Q1230E	ENST00000344626	NM_003072.3	1230	Cag/Gag																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005240	150005240	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	53	305	0	ENST00000253339.5:c.985C>G	p.Pro329Ala	p.P329A	ENST00000253339		329	Cca/Gca																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828126	243828126	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	372	390	0	ENST00000263826.5:c.232C>A	p.Gln78Lys	p.Q78K	ENST00000263826	NM_005465.4	78	Cag/Aag																																																																															
TET1	80312	MSKCC	GRCh37	10	70405356	70405356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	312	530	0	ENST00000373644.4:c.2870C>A	p.Pro957Gln	p.P957Q	ENST00000373644	NM_030625.2	957	cCa/cAa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39222369	39222369	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	377	634	0	ENST00000402219.2:c.3241A>G	p.Asn1081Asp	p.N1081D	ENST00000402219	NM_005633.3	1081	Aat/Gat																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27840051	27840051	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	230	373	0	ENST00000328488.2:c.43A>G	p.Lys15Glu	p.K15E	ENST00000328488	NM_003533.2	15	Aaa/Gaa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675400	30675400	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	96	545	0	ENST00000376406.3:c.2956T>C	p.Ser986Pro	p.S986P	ENST00000376406	NM_014641.2	986	Tct/Cct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0041628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	18	313	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720868	89720871	+	frameshift_variant	Frame_Shift_Del	DEL	ATTT	ATTT	-			P-0041628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	23	390	0	ENST00000371953.3:c.1019_1022del	p.Asn340IlefsTer3	p.N340Ifs*3	ENST00000371953	NM_000314.4	340	aATTTt/at																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061115	38061133	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGCCGCCCTTGGCGCC	CAGGGCCGCCCTTGGCGCC	-			P-0041628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	18	246	0	ENST00000250448.2:c.856_874del	p.Gly286ArgfsTer29	p.G286Rfs*29	ENST00000250448	NM_004496.3	286	GGCGCCAAGGGCGGCCCTGag/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	388	353	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	119	613	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
DICER1	23405	MSKCC	GRCh37	14	95574253	95574253	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149242330		P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	103	267	0	ENST00000343455.3:c.2614G>A	p.Ala872Thr	p.A872T	ENST00000343455	NM_177438.2	872	Gct/Act																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43772110	43772110	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	153	728	1	ENST00000382044.4:c.605C>A	p.Ser202Ter	p.S202*	ENST00000382044	NM_001141980.1	202	tCa/tAa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11272394	11272394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	105	417	0	ENST00000361445.4:c.3536C>T	p.Ser1179Leu	p.S1179L	ENST00000361445	NM_004958.3	1179	tCa/tTa																																																																															
PGR	5241	MSKCC	GRCh37	11	100909943	100909943	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	267	377	0	ENST00000325455.5:c.2706T>A	p.Ser902Arg	p.S902R	ENST00000325455	NM_001202474.3	902	agT/agA																																																																															
KDM5A	5927	MSKCC	GRCh37	12	459939	459939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	133	463	1	ENST00000399788.2:c.1156C>T	p.Pro386Ser	p.P386S	ENST00000399788	NM_001042603.1	386	Ccc/Tcc																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50492543	50492543	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	290	642	0	ENST00000394963.4:c.1439A>C	p.Glu480Ala	p.E480A	ENST00000394963	NM_003076.4	480	gAg/gCg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41239805	41239805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	315	636	1	ENST00000379561.5:c.545C>T	p.Thr182Met	p.T182M	ENST00000379561	NM_002015.3	182	aCg/aTg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046517	30046517	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	135	562	1	ENST00000331968.5:c.2666C>A	p.Ala889Asp	p.A889D	ENST00000331968	NM_002742.2	889	gCt/gAt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066958	30066958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	99	380	0	ENST00000331968.5:c.2173C>A	p.Leu725Ile	p.L725I	ENST00000331968	NM_002742.2	725	Ctt/Att																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675127	40675127	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	178	787	0	ENST00000249776.8:c.91T>A	p.Tyr31Asn	p.Y31N	ENST00000249776	NM_033286.3	31	Tac/Aac																																																																															
MGA	23269	MSKCC	GRCh37	15	42041429	42041429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	149	529	0	ENST00000219905.7:c.5624C>T	p.Ser1875Leu	p.S1875L	ENST00000219905	NM_001164273.1	1875	tCa/tTa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779676	3779676	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	286	642	0	ENST00000262367.5:c.5372del	p.Ser1791CysfsTer8	p.S1791Cfs*8	ENST00000262367	NM_004380.2	1791	tCg/tg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992511	72992511	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	516	779	0	ENST00000268489.5:c.1534G>T	p.Gly512Trp	p.G512W	ENST00000268489	NM_006885.3	512	Ggg/Tgg																																																																															
STK11	6794	MSKCC	GRCh37	19	1206987	1206987	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	351	687	0	ENST00000326873.7:c.75C>A	p.Phe25Leu	p.F25L	ENST00000326873	NM_000455.4	25	ttC/ttA																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303041	15303041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	385	820	2	ENST00000263388.2:c.409G>T	p.Gly137Trp	p.G137W	ENST00000263388	NM_000435.2	137	Ggg/Tgg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89462300	89462300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	86	366	0	ENST00000336596.2:c.1772C>T	p.Pro591Leu	p.P591L	ENST00000336596	NM_005233.5	591	cCa/cTa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106512982	106512982	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	127	187	1	ENST00000359195.3:c.1996G>C	p.Ala666Pro	p.A666P	ENST00000359195	NM_002649.2	666	Gct/Cct																																																																															
MET	4233	MSKCC	GRCh37	7	116380987	116380987	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	156	514	0	ENST00000397752.3:c.1609C>T	p.Gln537Ter	p.Q537*	ENST00000397752	NM_000245.2	537	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151835970	151835970	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	179	406	0	ENST00000262189.6:c.14554del	p.Ala4852HisfsTer9	p.A4852Hfs*9	ENST00000262189	NM_170606.2	4852	Gca/ca																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211538	98211538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	271	552	0	ENST00000331920.6:c.3617G>T	p.Arg1206Leu	p.R1206L	ENST00000331920	NM_000264.3	1206	cGc/cTc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793310	139793310	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	161	713	0	ENST00000247668.2:c.118G>T	p.Val40Phe	p.V40F	ENST00000247668	NM_021138.3	40	Gtc/Ttc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42840342	42840342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	70	432	0	ENST00000398585.3:c.1406G>A	p.Gly469Glu	p.G469E	ENST00000398585	NM_001135099.1	469	gGg/gAg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120510698	120510704	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ACCCATG	ACCCATG	-			P-0041631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	162	452	0	ENST00000256646.2:c.1260_1264+2del		p.X420_splice	ENST00000256646	NM_024408.3	420																																																																																
RET	5979	MSKCC	GRCh37	10	43623562	43623562	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0041631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	90	302	2	ENST00000355710.3:c.3190A>G	p.Met1064Val	p.M1064V	ENST00000355710	NM_020975.4	1064	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577069	7577069	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	247	764	0	ENST00000269305.4:c.869del	p.Arg290ProfsTer55	p.R290Pfs*55	ENST00000269305	NM_001126112.2	290	cGc/cc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0041429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	96	575	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650332	48650332	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200599207		P-0041429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	129	468	0	ENST00000376670.3:c.302C>T	p.Thr101Met	p.T101M	ENST00000376670	NM_002049.3	101	aCg/aTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147513	47147513	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	128	468	0	ENST00000409792.3:c.4813T>A	p.Tyr1605Asn	p.Y1605N	ENST00000409792	NM_014159.6	1605	Tat/Aat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447845	49447846	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	103	872	0	ENST00000301067.7:c.588dup	p.Cys197LeufsTer23	p.C197Lfs*23	ENST00000301067	NM_003482.3	196	-/C																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198262739	198262739	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	111	458	0	ENST00000335508.6:c.3236A>G	p.Asn1079Ser	p.N1079S	ENST00000335508	NM_012433.2	1079	aAc/aGc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256205	16256205	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	164	539	1	ENST00000375759.3:c.3475delA	p.Ile1159LeufsTer28	p.I1159Lfs*28	ENST00000375759	NM_015001.2	1157	gAa/ga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	179	530	7	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599302	28599302	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	311	729	2	ENST00000253063.3:c.748G>A	p.Gly250Arg	p.G250R	ENST00000253063	NM_031459.4	250	Ggg/Agg																																																																															
STK40	83931	MSKCC	GRCh37	1	36824368	36824368	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	196	573	0	ENST00000373129.3:c.168A>C	p.Lys56Asn	p.K56N	ENST00000373129	NM_032017.1	56	aaA/aaC																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843599	156843599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	298	815	0	ENST00000524377.1:c.1025G>A	p.Arg342Gln	p.R342Q	ENST00000524377	NM_002529.3	342	cGg/cAg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	155	266	1	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692826	89692826	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	63	161	0	ENST00000371953.3:c.313del	p.Cys105ValfsTer8	p.C105Vfs*8	ENST00000371953	NM_000314.4	104	Ttt/tt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	60	579	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946901	71946901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	242	802	0	ENST00000298229.2:c.2750G>A	p.Arg917His	p.R917H	ENST00000298229	NM_001567.3	917	cGc/cAc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94924639	94924639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	96	648	0	ENST00000536441.1:c.271C>T	p.Arg91Trp	p.R91W	ENST00000536441	NM_144665.3	91	Cgg/Tgg																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125499317	125499317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	75	326	0	ENST00000428830.2:c.386G>T	p.Arg129Met	p.R129M	ENST00000428830	NM_001114121.2	129	aGg/aTg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	136	417	2	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	111	504	7	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425184	49425184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	377	859	0	ENST00000301067.7:c.13304C>T	p.Ala4435Val	p.A4435V	ENST00000301067	NM_003482.3	4435	gCc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432396	49432396	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	341	828	0	ENST00000301067.7:c.8743C>T	p.Arg2915Ter	p.R2915*	ENST00000301067	NM_003482.3	2915	Cga/Tga																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856521	111856521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	154	348	0	ENST00000341259.2:c.572C>T	p.Pro191Leu	p.P191L	ENST00000341259	NM_005475.2	191	cCg/cTg																																																																															
MSI1	4440	MSKCC	GRCh37	12	120794796	120794797	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	312	875	0	ENST00000257552.2:c.560dup	p.Glu188GlyfsTer191	p.E188Gfs*191	ENST00000257552	NM_002442.3	187	aag/aaAg																																																																															
POLE	5426	MSKCC	GRCh37	12	133209298	133209298	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	240	692	1	ENST00000320574.5:c.6088delG	p.Ala2030ProfsTer18	p.A2030Pfs*18	ENST00000320574	NM_006231.2	2030	Gcc/cc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28674632	28674632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	44	36	0	ENST00000241453.7:c.16C>T	p.Arg6Cys	p.R6C	ENST00000241453	NM_004119.2	6	Cgc/Tgc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	121	348	1	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061649	38061649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	129	339	0	ENST00000250448.2:c.340G>A	p.Gly114Ser	p.G114S	ENST00000250448	NM_004496.3	114	Ggc/Agc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95563031	95563031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	101	259	0	ENST00000343455.3:c.4226C>T	p.Ala1409Val	p.A1409V	ENST00000343455	NM_177438.2	1409	gCg/gTg																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38631981	38631981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	108	515	2	ENST00000299084.4:c.471delT	p.Gln158SerfsTer16	p.Q158Sfs*16	ENST00000299084	NM_152594.2	156	cTt/ct																																																																															
MGA	23269	MSKCC	GRCh37	15	42028622	42028622	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	189	570	0	ENST00000219905.7:c.4160A>G	p.Asn1387Ser	p.N1387S	ENST00000219905	NM_001164273.1	1387	aAc/aGc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423598	88423598	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	169	574	0	ENST00000360948.2:c.2237A>C	p.Lys746Thr	p.K746T	ENST00000360948	NM_001012338.2	746	aAg/aCg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56867253	56867253	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	198	381	0	ENST00000308159.5:c.1472A>G	p.His491Arg	p.H491R	ENST00000308159	NM_014669.4	491	cAt/cGt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67655343	67655343	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	92	333	0	ENST00000264010.4:c.1208-2A>G		p.X403_splice	ENST00000264010	NM_006565.3	403																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72828251	72828251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	177	611	0	ENST00000268489.5:c.8330G>A	p.Ser2777Asn	p.S2777N	ENST00000268489	NM_006885.3	2777	aGt/aAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993013	72993014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	240	847	0	ENST00000268489.5:c.1031dup	p.Asn344LysfsTer13	p.N344Kfs*13	ENST00000268489	NM_006885.3	344	aac/aaAc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81957132	81957132	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	166	479	1	ENST00000359376.3:c.2350C>T	p.Arg784Ter	p.R784*	ENST00000359376	NM_002661.3	784	Cga/Tga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	85	290	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119703	17119703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	80	468	0	ENST00000285071.4:c.1291C>T	p.Leu431Phe	p.L431F	ENST00000285071	NM_144997.5	431	Ctc/Ttc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883774	37883774	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	285	809	1	ENST00000269571.5:c.3391delC	p.Leu1131Ter	p.L1131*	ENST00000269571		1129	gCc/gc																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804246	46804246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	260	727	1	ENST00000290295.7:c.761G>A	p.Ser254Asn	p.S254N	ENST00000290295	NM_006361.5	254	aGc/aAc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740450	58740450	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	156	570	0	ENST00000305921.3:c.1357del	p.Ser453GlnfsTer4	p.S453Qfs*4	ENST00000305921	NM_003620.3	452	gTt/gt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573505	48573506	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	50	270	0	ENST00000342988.3:c.94_95delAG	p.Ser32Ter	p.S32*	ENST00000342988	NM_005359.5	30	gGA/g																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767326		P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	47	258	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231539	5231539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	121	618	1	ENST00000357368.4:c.1937C>T	p.Thr646Met	p.T646M	ENST00000357368	NM_002850.3	646	aCg/aTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10260127	10260127	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	129	617	0	ENST00000340748.4:c.2538+2T>C		p.X846_splice	ENST00000340748		846																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15303246	15303246	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	142	881	0	ENST00000263388.2:c.282G>T	p.Gln94His	p.Q94H	ENST00000263388	NM_000435.2	94	caG/caT																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943456	17943456	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	138	764	0	ENST00000458235.1:c.2552T>C	p.Leu851Pro	p.L851P	ENST00000458235	NM_000215.3	851	cTg/cCg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17950470	17950470	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	135	685	0	ENST00000458235.1:c.1257C>A	p.Asn419Lys	p.N419K	ENST00000458235	NM_000215.3	419	aaC/aaA																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213376	36213376	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	296	885	1	ENST00000222270.7:c.2571+2T>C		p.X857_splice	ENST00000222270	NM_014727.1	857																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36229237	36229237	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	66	689	0	ENST00000222270.7:c.7927A>G	p.Met2643Val	p.M2643V	ENST00000222270	NM_014727.1	2643	Atg/Gtg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753887	42753887	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	542	797	2	ENST00000222329.4:c.377del	p.Gly126ValfsTer145	p.G126Vfs*145	ENST00000222329	NM_006494.2	126	gGt/gt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50916773	50916773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	351	625	2	ENST00000440232.2:c.2245G>A	p.Ala749Thr	p.A749T	ENST00000440232	NM_002691.3	749	Gcc/Acc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661129	227661129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781654199		P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	65	774	1	ENST00000305123.5:c.2326C>T	p.Arg776Cys	p.R776C	ENST00000305123	NM_005544.2	776	Cgc/Tgc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384651	31384651	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	241	751	2	ENST00000328111.2:c.1359del	p.Leu454SerfsTer136	p.L454Sfs*136	ENST00000328111	NM_006892.3	451	gaG/ga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827961	40827961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	210	506	0	ENST00000373198.4:c.2467G>A	p.Ala823Thr	p.A823T	ENST00000373198	NM_133170.3	823	Gcc/Acc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845396	42845396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	237	670	0	ENST00000398585.3:c.866G>A	p.Arg289His	p.R289H	ENST00000398585	NM_001135099.1	289	cGc/cAc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24167562	24167562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	220	608	0	ENST00000263121.7:c.946C>T	p.Arg316Trp	p.R316W	ENST00000263121	NM_003073.3	316	Cgg/Tgg																																																																															
EP300	2033	MSKCC	GRCh37	22	41574736	41574737	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	296	858	0	ENST00000263253.7:c.7025dup	p.Gln2343ThrfsTer36	p.Q2343Tfs*36	ENST00000263253	NM_001429.3	2341	tcc/tCcc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37090057	37090057	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	61	559	0	ENST00000231790.2:c.1946C>A	p.Pro649His	p.P649H	ENST00000231790	NM_000249.3	649	cCt/cAt																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99823088	99823088	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	96	390	0	ENST00000280892.6:c.124del	p.Thr42ArgfsTer41	p.T42Rfs*41	ENST00000280892	NM_001130678.1	42	Acg/cg																																																																															
TET2	54790	MSKCC	GRCh37	4	106197300	106197300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	57	333	0	ENST00000380013.4:c.5633G>A	p.Arg1878His	p.R1878H	ENST00000380013	NM_001127208.2	1878	cGt/cAt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38963111	38963111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	47	235	0	ENST00000357387.3:c.1433G>A	p.Arg478His	p.R478H	ENST00000357387	NM_152756.3	478	cGc/cAc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	301	519	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	65	341	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	73	209	1	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288620	33288620	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	90	392	0	ENST00000374542.5:c.932T>G	p.Leu311Arg	p.L311R	ENST00000374542	NM_001141970.1	311	cTc/cGc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152420001	152420001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	185	534	3	ENST00000206249.3:c.1688C>T	p.Thr563Met	p.T563M	ENST00000206249	NM_000125.3	563	aCg/aTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099427	157099432	+	inframe_deletion	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	rs1234257273		P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	57	313	0	ENST00000346085.5:c.381_386del	p.Gln130_Gln131del	p.Q130_Q131del	ENST00000346085	NM_020732.3	122	CAGCAG/-																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521969	157521969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs530430137		P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	54	549	0	ENST00000346085.5:c.4241C>T	p.Pro1414Leu	p.P1414L	ENST00000346085	NM_020732.3	1414	cCg/cTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55266558	55266558	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	149	420	0	ENST00000275493.2:c.2848+2T>C		p.X950_splice	ENST00000275493	NM_005228.3	950																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106508257	106508257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	99	337	1	ENST00000359195.3:c.251C>T	p.Ala84Val	p.A84V	ENST00000359195	NM_002649.2	84	gCg/gTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545783	106545783	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	202	474	0	ENST00000359195.3:c.3260T>C	p.Phe1087Ser	p.F1087S	ENST00000359195	NM_002649.2	1087	tTt/tCt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	129	351	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68930087	68930087	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	108	315	0	ENST00000288368.4:c.148T>G	p.Leu50Val	p.L50V	ENST00000288368	NM_024870.2	50	Tta/Gta																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249593	110249593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	366	908	1	ENST00000374672.4:c.1082C>T	p.Pro361Leu	p.P361L	ENST00000374672	NM_004235.4	361	cCg/cTg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128419934	128419934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	37	471	1	ENST00000265960.3:c.494G>A	p.Gly165Asp	p.G165D	ENST00000265960	NM_001006617.1	165	gGc/gAc																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128420046	128420047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	124	596	0	ENST00000265960.3:c.381dup	p.Ser128IlefsTer28	p.S128Ifs*28	ENST00000265960	NM_001006617.1	127	-/A																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413899	139413899	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	361	598	0	ENST00000277541.6:c.861G>A	p.Trp287Ter	p.W287*	ENST00000277541	NM_017617.3	287	tgG/tgA																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20153856	20153857	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	87	366	0	ENST00000379607.5:c.203dup	p.Val69GlyfsTer19	p.V69Gfs*19	ENST00000379607	NM_001412.3	68	aag/aaAg																																																																															
EP300	2033	MSKCC	GRCh37	22	41566524	41566525	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	47	458	1	ENST00000263253.7:c.4408dup	p.Met1470AsnfsTer3	p.M1470Nfs*3	ENST00000263253	NM_001429.3	1467	-/A																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526211	31526211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1117	190	1059	0	ENST00000344624.3:c.829C>T	p.Arg277Cys	p.R277C	ENST00000344624		277	Cgc/Tgc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165321	47165321	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	38	321	0	ENST00000409792.3:c.805C>T	p.Gln269Ter	p.Q269*	ENST00000409792	NM_014159.6	269	Caa/Taa																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20152079	20152079	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	12	203	0	ENST00000379607.5:c.251A>G	p.Tyr84Cys	p.Y84C	ENST00000379607	NM_001412.3	84	tAc/tGc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307484	118307484	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	48	642	0	ENST00000534358.1:c.257C>G	p.Ser86Trp	p.S86W	ENST00000534358	NM_005933.3	86	tCg/tGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0041546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	14	620	1	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	38	315	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	18	504	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	33	641	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120491716	120491716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	17	291	0	ENST00000256646.2:c.2513C>T	p.Ser838Phe	p.S838F	ENST00000256646	NM_024408.3	838	tCc/tTc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47084144	47084144	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	25	428	0	ENST00000409792.3:c.7145C>G	p.Ser2382Cys	p.S2382C	ENST00000409792	NM_014159.6	2382	tCt/tGt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164010	47164010	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	13	231	0	ENST00000409792.3:c.2116G>T	p.Glu706Ter	p.E706*	ENST00000409792	NM_014159.6	706	Gaa/Taa																																																																															
POLE	5426	MSKCC	GRCh37	12	133249236	133249236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	37	522	0	ENST00000320574.5:c.1663G>T	p.Asp555Tyr	p.D555Y	ENST00000320574	NM_006231.2	555	Gat/Tat																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67196068	67196068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	43	512	0	ENST00000312629.5:c.52G>A	p.Glu18Lys	p.E18K	ENST00000312629	NM_003952.2	18	Gag/Aag																																																																															
POLE	5426	MSKCC	GRCh37	12	133225976	133225976	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	55	695	0	ENST00000320574.5:c.3921C>G	p.Ile1307Met	p.I1307M	ENST00000320574	NM_006231.2	1307	atC/atG																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56780604	56780604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	17	428	0	ENST00000337432.4:c.619C>T	p.His207Tyr	p.H207Y	ENST00000337432	NM_058216.2	207	Cat/Tat																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627280	14627280	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	43	801	0	ENST00000254322.2:c.790G>A	p.Glu264Lys	p.E264K	ENST00000254322	NM_006145.1	264	Gag/Aag																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627553	14627553	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	35	513	0	ENST00000254322.2:c.517G>C	p.Glu173Gln	p.E173Q	ENST00000254322	NM_006145.1	173	Gaa/Caa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1918624	1918624	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	24	371	0	ENST00000382891.5:c.787C>G	p.His263Asp	p.H263D	ENST00000382891	NM_133335.3	263	Cac/Gac																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250644	26250644	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	31	510	0	ENST00000446824.2:c.190C>A	p.Arg64Ser	p.R64S	ENST00000446824	NM_021018.2	64	Cgc/Agc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005194	150005194	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	20	342	0	ENST00000253339.5:c.1031G>C	p.Arg344Thr	p.R344T	ENST00000253339		344	aGa/aCa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151864299	151864299	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	19	362	0	ENST00000262189.6:c.9682G>C	p.Glu3228Gln	p.E3228Q	ENST00000262189	NM_170606.2	3228	Gag/Cag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933488	39933488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	35	628	0	ENST00000378444.4:c.1111G>A	p.Ala371Thr	p.A371T	ENST00000378444	NM_001123385.1	371	Gcc/Acc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0041305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	113	409	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs780442292		P-0041305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	119	969	0	ENST00000269305.4:c.401T>G	p.Phe134Cys	p.F134C	ENST00000269305	NM_001126112.2	134	tTt/tGt																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112888165	112888165	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	63	664	1	ENST00000351677.2:c.181G>T	p.Asp61Tyr	p.D61Y	ENST00000351677	NM_002834.3	61	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0041307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	193	583	0	ENST00000269305.4:c.993+2T>C		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
APC	324	MSKCC	GRCh37	5	112176027	112176030	+	frameshift_variant	Frame_Shift_Del	DEL	TTAT	TTAT	-			P-0041307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	58	313	0	ENST00000257430.4:c.4738_4741del	p.Ile1580LeufsTer69	p.I1580Lfs*69	ENST00000257430	NM_000038.5	1579	aTTATt/at																																																																															
PMS1	5378	MSKCC	GRCh37	2	190682806	190682806	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	14	323	0	ENST00000441310.2:c.482C>A	p.Thr161Asn	p.T161N	ENST00000441310	NM_000534.4	161	aCt/aAt																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84384653	84384653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	54	495	0	ENST00000321945.7:c.790G>A	p.Ala264Thr	p.A264T	ENST00000321945	NM_139076.2	264	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112174269	112174279	+	frameshift_variant	Frame_Shift_Del	DEL	AGTTTTGCAGT	AGTTTTGCAGT	-			P-0041307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	12	320	0	ENST00000257430.4:c.2978_2988del	p.Lys993IlefsTer11	p.K993Ifs*11	ENST00000257430	NM_000038.5	993	aAGTTTTGCAGT/a																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93953197	93953197	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	34	392	0	ENST00000369303.4:c.2944C>A	p.Gln982Lys	p.Q982K	ENST00000369303	NM_004440.3	982	Cag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	376	514	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435251	49435251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	142	954	0	ENST00000301067.7:c.6302C>T	p.Ala2101Val	p.A2101V	ENST00000301067	NM_003482.3	2101	gCc/gTc																																																																															
MGA	23269	MSKCC	GRCh37	15	42059142	42059142	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	106	521	0	ENST00000219905.7:c.8864del	p.Pro2955LeufsTer15	p.P2955Lfs*15	ENST00000219905	NM_001164273.1	2954	ctC/ct																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778066	27778066	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	106	760	0	ENST00000369163.2:c.215T>A	p.Val72Glu	p.V72E	ENST00000369163	NM_003536.2	72	gTg/gAg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978470	70978470	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0041355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	75	438	0	ENST00000276594.2:c.1183G>T	p.Glu395Ter	p.E395*	ENST00000276594	NM_024504.3	395	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0041364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	197	755	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	157	318	1	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332875	152332875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	101	421	0	ENST00000206249.3:c.1181G>A	p.Arg394His	p.R394H	ENST00000206249	NM_000125.3	394	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175476	112175476	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	77	310	0	ENST00000257430.4:c.4188del	p.Phe1396LeufsTer19	p.F1396Lfs*19	ENST00000257430	NM_000038.5	1395	agT/ag																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56787223	56787223	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	118	407	0	ENST00000337432.4:c.709C>T	p.Arg237Ter	p.R237*	ENST00000337432	NM_058216.2	237	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0041370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	81	266	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68842405	68842405	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	192	462	0	ENST00000261769.5:c.466T>G	p.Trp156Gly	p.W156G	ENST00000261769	NM_004360.3	156	Tgg/Ggg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106536269	106536269	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1427730094		P-0041370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	166	380	0	ENST00000369096.4:c.236C>T	p.Ala79Val	p.A79V	ENST00000369096	NM_001198.3	79	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0041421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	419	320	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0041421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	319	617	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79965953	79965953	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0041421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	66	434	0	ENST00000265081.6:c.617C>G	p.Ser206Ter	p.S206*	ENST00000265081	NM_002439.4	206	tCa/tGa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162198	38162198	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	228	471	0	ENST00000317025.8:c.2518G>C	p.Val840Leu	p.V840L	ENST00000317025	NM_023034.1	840	Gta/Cta																																																																															
HRAS	3265	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28933406		P-0022426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			932	575	891	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600042	10600042	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs148641376		P-0022426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			543	209	789	0	ENST00000171111.5:c.1534G>A	p.Val512Ile	p.V512I	ENST00000171111	NM_203500.1	512	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0022426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	374	712	0	ENST00000269305.4:c.783-1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
TNFRSF14	8764	MSKCC	GRCh37	1	2491295	2491295	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022426-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			567	502	933	0	ENST00000355716.4:c.338G>C	p.Arg113Thr	p.R113T	ENST00000355716	NM_003820.2	113	aGg/aCg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0041190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	123	571	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363489	40363489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	121	656	0	ENST00000397332.2:c.740G>A	p.Arg247His	p.R247H	ENST00000397332	NM_001033082.2	247	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023747	27023747	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	109	509	0	ENST00000324856.7:c.853G>T	p.Gly285Ter	p.G285*	ENST00000324856	NM_006015.4	285	Gga/Tga																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949156	44949156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	95	455	0	ENST00000377967.4:c.3717G>T	p.Trp1239Cys	p.W1239C	ENST00000377967	NM_021140.2	1239	tgG/tgT																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115947	8115962	+	frameshift_variant	Frame_Shift_Del	DEL	ACCACACCACCCCTCC	ACCACACCACCCCTCC	-			P-0041190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	65	462	0	ENST00000346208.3:c.1294_1309del	p.Pro432AlafsTer38	p.P432Afs*38	ENST00000346208		431	ggACCACACCACCCCTCC/gg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663237	227663237	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	131	720	0	ENST00000305123.5:c.218A>G	p.Asn73Ser	p.N73S	ENST00000305123	NM_005544.2	73	aAc/aGc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400817	72400817	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0041240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	31	389	0	ENST00000357731.5:c.354T>A	p.Cys118Ter	p.C118*	ENST00000357731	NM_173808.2	118	tgT/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0041272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	196	155	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0041272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	151	101	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0041274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	317	143	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521120	187521120	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752997628		P-0041274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	123	464	0	ENST00000441802.2:c.12035C>T	p.Thr4012Met	p.T4012M	ENST00000441802	NM_005245.3	4012	aCg/aTg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1940200	1940200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	93	212	0	ENST00000382895.3:c.1697C>T	p.Thr566Met	p.T566M	ENST00000382895	NM_133330.2	566	aCg/aTg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25458575	25458575	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0041274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	64	253	0	ENST00000264709.3:c.2597+1G>T		p.X866_splice	ENST00000264709	NM_175629.2	866																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27023720	27023720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	153	306	0	ENST00000324856.7:c.826G>A	p.Gly276Arg	p.G276R	ENST00000324856	NM_006015.4	276	Gga/Aga																																																																															
PARP1	142	MSKCC	GRCh37	1	226555254	226555254	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	179	470	0	ENST00000366794.5:c.2333T>A	p.Leu778His	p.L778H	ENST00000366794	NM_001618.3	778	cTc/cAc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828168	243828168	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	163	90	0	ENST00000263826.5:c.190del	p.Thr64GlnfsTer10	p.T64Qfs*10	ENST00000263826	NM_005465.4	64	Aca/ca																																																																															
CTCF	10664	MSKCC	GRCh37	16	67662366	67662366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	163	564	0	ENST00000264010.4:c.1612C>T	p.Leu538Phe	p.L538F	ENST00000264010	NM_006565.3	538	Ctc/Ttc																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204732747	204732747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	126	370	0	ENST00000302823.3:c.82C>T	p.Leu28Phe	p.L28F	ENST00000302823	NM_005214.4	28	Ctt/Ttt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68999983	68999985	+	missense_variant	Missense_Mutation	ONP	TGA	TGA	CGT			P-0041274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	132	351	0	ENST00000288368.4:c.2052_2054delinsCGT	p.Asp685Val	p.D685V	ENST00000288368	NM_024870.2	684	gcTGAt/gcCGTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	42	337	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	83	544	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107136	27107137	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0039456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	60	441	0	ENST00000324856.7:c.6749_6750del	p.Glu2250ValfsTer27	p.E2250Vfs*27	ENST00000324856	NM_006015.4	2249	tcAGag/tcag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0039668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	109	437	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68857502	68857503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	112	410	0	ENST00000261769.5:c.2139dup	p.Leu714SerfsTer34	p.L714Sfs*34	ENST00000261769	NM_004360.3	713	att/aTtt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231872	36231872	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	139	436	0	ENST00000300305.3:c.512A>T	p.Lys171Ile	p.K171I	ENST00000300305		171	aAa/aTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945391	151945392	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0039668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	250	464	0	ENST00000262189.6:c.2127_2128del	p.Cys710SerfsTer2	p.C710Sfs*2	ENST00000262189	NM_170606.2	709	ttATgt/ttgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	151	811	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460354	149460354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	67	483	0	ENST00000286301.3:c.283G>A	p.Ala95Thr	p.A95T	ENST00000286301	NM_005211.3	95	Gcc/Acc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163642	32163642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	50	352	0	ENST00000375023.3:c.5584C>G	p.Arg1862Gly	p.R1862G	ENST00000375023	NM_004557.3	1862	Cgg/Ggg																																																																															
MYCL	4610	MSKCC	GRCh37	1	40367115	40367115	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	28	447	0	ENST00000397332.2:c.82G>A	p.Gly28Arg	p.G28R	ENST00000397332	NM_001033082.2	28	Gga/Aga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097802	8097802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	79	627	0	ENST00000346208.3:c.184C>T	p.Pro62Ser	p.P62S	ENST00000346208		62	Ccc/Tcc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115266560	115266560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	58	544	0	ENST00000438362.2:c.1955G>A	p.Arg652Lys	p.R652K	ENST00000438362	NM_001242891.1	652	aGg/aAg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416809	416809	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	74	405	0	ENST00000399788.2:c.3741G>T	p.Gln1247His	p.Q1247H	ENST00000399788	NM_001042603.1	1247	caG/caT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443958	49443958	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	101	763	1	ENST00000301067.7:c.3413del	p.Gly1138AspfsTer26	p.G1138Dfs*26	ENST00000301067	NM_003482.3	1138	gGa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	99	651	0	ENST00000269305.4:c.610delG	p.Glu204SerfsTer43	p.E204Sfs*43	ENST00000269305	NM_001126112.2	204	Gag/ag																																																																															
GNA11	2767	MSKCC	GRCh37	19	3113380	3113380	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	79	700	0	ENST00000078429.4:c.374A>T	p.Glu125Val	p.E125V	ENST00000078429	NM_002067.2	125	gAg/gTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610394	10610394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	47	751	0	ENST00000171111.5:c.316G>A	p.Val106Ile	p.V106I	ENST00000171111	NM_203500.1	106	Gtc/Atc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292540	15292540	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	83	801	0	ENST00000263388.2:c.2639C>A	p.Ala880Asp	p.A880D	ENST00000263388	NM_000435.2	880	gCc/gAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056341	180056341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	105	806	1	ENST00000261937.6:c.903C>A	p.Ser301Arg	p.S301R	ENST00000261937	NM_182925.4	301	agC/agA																																																																															
LYN	4067	MSKCC	GRCh37	8	56863315	56863315	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	65	482	0	ENST00000519728.1:c.459C>A	p.Phe153Leu	p.F153L	ENST00000519728	NM_002350.3	153	ttC/ttA																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974698	21974699	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	65	374	0	ENST00000304494.5:c.128_129del	p.Ser43IlefsTer76	p.S43Ifs*76	ENST00000304494	NM_000077.4	43	aGT/a																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405686	139405687	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	110	890	0	ENST00000277541.6:c.2504_2505insT	p.Ser836GlnfsTer16	p.S836Qfs*16	ENST00000277541	NM_017617.3	835	ccc/ccTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0040923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	78	332	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0040923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	271	702	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0040923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	90	427	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
CTCF	10664	MSKCC	GRCh37	16	67655380	67655380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	99	497	0	ENST00000264010.4:c.1243C>T	p.Arg415Trp	p.R415W	ENST00000264010	NM_006565.3	415	Cgg/Tgg																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225474	26225474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	105	352	0	ENST00000360408.1:c.92C>T	p.Pro31Leu	p.P31L	ENST00000360408	NM_003532.2	31	cCg/cTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55971127	55971127	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	132	547	0	ENST00000263923.4:c.1670C>A	p.Pro557His	p.P557H	ENST00000263923	NM_002253.2	557	cCt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175145	112175146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	57	204	0	ENST00000257430.4:c.3855dup	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1285	gat/gaTt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176722030	176722030	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	51	458	0	ENST00000439151.2:c.7661A>G	p.Gln2554Arg	p.Q2554R	ENST00000439151	NM_022455.4	2554	cAg/cGg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44928994	44928998	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCT	CCTCT	-			P-0040923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	152	504	0	ENST00000377967.4:c.2100_2104del	p.Ser701HisfsTer27	p.S701Hfs*27	ENST00000377967	NM_021140.2	698	caCCTCTcc/cacc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0041022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	86	511	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	78	524	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508955	106508955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	36	435	0	ENST00000359195.3:c.949G>A	p.Glu317Lys	p.E317K	ENST00000359195	NM_002649.2	317	Gag/Aag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248401	212248401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	36	256	0	ENST00000342788.4:c.3866C>T	p.Ser1289Phe	p.S1289F	ENST00000342788	NM_005235.2	1289	tCc/tTc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883959	37883959	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138611862		P-0041022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	92	676	0	ENST00000269571.5:c.3430G>C	p.Asp1144His	p.D1144H	ENST00000269571		1144	Gat/Cat																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210474	2210474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	40	723	1	ENST00000398665.3:c.1081G>A	p.Glu361Lys	p.E361K	ENST00000398665	NM_032482.2	361	Gag/Aag																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033959	48033959	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	24	298	0	ENST00000234420.5:c.4043A>G	p.Glu1348Gly	p.E1348G	ENST00000234420	NM_000179.2	1348	gAa/gGa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160564	56160564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	44	216	0	ENST00000399503.3:c.838C>A	p.Gln280Lys	p.Q280K	ENST00000399503	NM_005921.1	280	Cag/Aag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178367	56178400	+	frameshift_variant	Frame_Shift_Del	DEL	ACCCCAGTAGAGGAGAAATGCAGATTAGATGTCA	ACCCCAGTAGAGGAGAAATGCAGATTAGATGTCA	-			P-0041022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	26	279	0	ENST00000399503.3:c.3341_3374del	p.Thr1114IlefsTer23	p.T1114Ifs*23	ENST00000399503	NM_005921.1	1114	ACCCCAGTAGAGGAGAAATGCAGATTAGATGTCAat/at																																																																															
BRAF	673	MSKCC	GRCh37	7	140500172	140500172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	68	691	1	ENST00000288602.6:c.970G>T	p.Asp324Tyr	p.D324Y	ENST00000288602	NM_004333.4	324	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	247	548	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	86	480	0	ENST00000342988.3:c.1051G>C	p.Asp351His	p.D351H	ENST00000342988	NM_005359.5	351	Gat/Cat																																																																															
MGA	23269	MSKCC	GRCh37	15	41988555	41988555	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	91	558	0	ENST00000219905.7:c.1349del	p.Pro450HisfsTer12	p.P450Hfs*12	ENST00000219905	NM_001164273.1	449	agC/ag																																																																															
NF1	4763	MSKCC	GRCh37	17	29657370	29657370	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	77	609	0	ENST00000358273.4:c.5666A>T	p.Glu1889Val	p.E1889V	ENST00000358273	NM_001042492.2	1889	gAg/gTg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046386	128046386	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	87	460	0	ENST00000285398.2:c.877del	p.Ala293GlnfsTer18	p.A293Qfs*18	ENST00000285398	NM_000122.1	293	Gca/ca																																																																															
SETD2	29072	MSKCC	GRCh37	3	47108609	47108609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	79	296	0	ENST00000409792.3:c.6061-1G>C		p.X2021_splice	ENST00000409792	NM_014159.6	2021																																																																																
FOXP1	27086	MSKCC	GRCh37	3	71027114	71027114	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	84	584	0	ENST00000318789.4:c.1213C>G	p.His405Asp	p.H405D	ENST00000318789	NM_032682.5	405	Cat/Gat																																																																															
ATR	545	MSKCC	GRCh37	3	142280188	142280188	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	97	524	0	ENST00000350721.4:c.1246C>A	p.Gln416Lys	p.Q416K	ENST00000350721	NM_001184.3	416	Caa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936070	178936070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	36	415	0	ENST00000263967.3:c.1612G>A	p.Asp538Asn	p.D538N	ENST00000263967	NM_006218.2	538	Gat/Aat																																																																															
SDHA	6389	MSKCC	GRCh37	5	233660	233660	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	44	115	0	ENST00000264932.6:c.964C>T	p.Gln322Ter	p.Q322*	ENST00000264932	NM_004168.2	322	Caa/Taa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460555	149460555	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	117	788	0	ENST00000286301.3:c.82C>G	p.Pro28Ala	p.P28A	ENST00000286301	NM_005211.3	28	Cct/Gct																																																																															
PREX2	80243	MSKCC	GRCh37	8	68950455	68950455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	55	452	0	ENST00000288368.4:c.767C>G	p.Ser256Cys	p.S256C	ENST00000288368	NM_024870.2	256	tCt/tGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460567	8460567	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	75	374	0	ENST00000356435.5:c.3719T>A	p.Met1240Lys	p.M1240K	ENST00000356435		1240	aTg/aAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151892994	151892994	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0041118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			133	66	233	0	ENST00000262189.6:c.4376C>G	p.Ser1459Ter	p.S1459*	ENST00000262189	NM_170606.2	1459	tCa/tGa																																																																															
CDH1	999	MSKCC	GRCh37	16	68849484	68849484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			222	151	659	1	ENST00000261769.5:c.1387G>C	p.Glu463Gln	p.E463Q	ENST00000261769	NM_004360.3	463	Gag/Cag																																																																															
CBL	867	MSKCC	GRCh37	11	119144612	119144612	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			274	41	405	0	ENST00000264033.4:c.625C>G	p.Leu209Val	p.L209V	ENST00000264033	NM_005188.3	209	Cta/Gta																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128051204	128051204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			303	127	713	1	ENST00000285398.2:c.119C>T	p.Ser40Leu	p.S40L	ENST00000285398	NM_000122.1	40	tCg/tTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21968242	21968242	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0041118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			133	96	396	0	ENST00000304494.5:c.458-1G>C		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																																
TP53BP1	7158	MSKCC	GRCh37	15	43748582	43748582	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			428	176	944	0	ENST00000382044.4:c.2224G>T	p.Glu742Ter	p.E742*	ENST00000382044	NM_001141980.1	742	Gaa/Taa																																																																															
TET1	80312	MSKCC	GRCh37	10	70332307	70332307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			269	117	468	1	ENST00000373644.4:c.212G>T	p.Arg71Ile	p.R71I	ENST00000373644	NM_030625.2	71	aGa/aTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443534	49443534	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	115	697	0	ENST00000301067.7:c.3837C>G	p.Ile1279Met	p.I1279M	ENST00000301067	NM_003482.3	1279	atC/atG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443583	49443583	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0041118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			359	126	789	0	ENST00000301067.7:c.3788C>G	p.Ser1263Ter	p.S1263*	ENST00000301067	NM_003482.3	1263	tCa/tGa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966987	25966987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			391	130	834	0	ENST00000435504.4:c.2219C>T	p.Thr740Met	p.T740M	ENST00000435504		740	aCg/aTg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99136536	99136536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	122	789	1	ENST00000074304.5:c.25C>T	p.Arg9Cys	p.R9C	ENST00000074304	NM_001134224.1	9	Cgc/Tgc																																																																															
TET2	54790	MSKCC	GRCh37	4	106156003	106156003	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			295	36	316	0	ENST00000380013.4:c.904G>C	p.Asp302His	p.D302H	ENST00000380013	NM_001127208.2	302	Gat/Cat																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287454	33287475	+	frameshift_variant	Frame_Shift_Del	DEL	TTGCTTTCAGCATCTATGCTGG	TTGCTTTCAGCATCTATGCTGG	-			P-0041118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	113	654	0	ENST00000374542.5:c.1622_1643del	p.Ser541LeufsTer8	p.S541Lfs*8	ENST00000374542	NM_001141970.1	541	tCCAGCATAGATGCTGAAAGCAAt/tt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69058521	69058521	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			335	86	600	0	ENST00000288368.4:c.4165G>C	p.Glu1389Gln	p.E1389Q	ENST00000288368	NM_024870.2	1389	Gaa/Caa																																																																															
FANCC	2176	MSKCC	GRCh37	9	97864071	97864071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55939573		P-0041118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			283	132	631	1	ENST00000289081.3:c.1595G>A	p.Arg532Lys	p.R532K	ENST00000289081	NM_000136.2	532	aGa/aAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0041125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	64	385	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
BRAF	673	MSKCC	GRCh37	7	140477807	140477807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	84	511	0	ENST00000288602.6:c.1501G>A	p.Glu501Lys	p.E501K	ENST00000288602	NM_004333.4	501	Gaa/Aaa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11291488	11291488	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	66	497	0	ENST00000361445.4:c.2518G>T	p.Ala840Ser	p.A840S	ENST00000361445	NM_004958.3	840	Gct/Tct																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097657	8097657	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	70	432	0	ENST00000346208.3:c.39C>A	p.His13Gln	p.H13Q	ENST00000346208		13	caC/caA																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63759849	63759849	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0041125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	33	325	0	ENST00000279873.7:c.503-1G>C		p.X168_splice	ENST00000279873	NM_032199.2	168																																																																																
PDCD1	5133	MSKCC	GRCh37	2	242794889	242794889	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	132	937	0	ENST00000334409.5:c.320A>T	p.His107Leu	p.H107L	ENST00000334409	NM_005018.2	107	cAc/cTc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133621	55133621	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	76	502	0	ENST00000257290.5:c.925G>T	p.Val309Phe	p.V309F	ENST00000257290	NM_006206.4	309	Gtc/Ttc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149447870	149447870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1169	118	977	0	ENST00000286301.3:c.1534G>T	p.Glu512Ter	p.E512*	ENST00000286301	NM_005211.3	512	Gag/Tag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545811	106545811	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	65	448	0	ENST00000359195.3:c.3288A>T	p.Gln1096His	p.Q1096H	ENST00000359195	NM_002649.2	1096	caA/caT																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139404368	139404368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1203	137	949	0	ENST00000277541.6:c.2786C>T	p.Ala929Val	p.A929V	ENST00000277541	NM_017617.3	929	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0041186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	108	661	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108168020	108168020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	18	215	1	ENST00000278616.4:c.4916C>T	p.Pro1639Leu	p.P1639L	ENST00000278616	NM_000051.3	1639	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	24	337	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
TET2	54790	MSKCC	GRCh37	4	106193787	106193787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	17	257	0	ENST00000380013.4:c.4249G>A	p.Val1417Ile	p.V1417I	ENST00000380013	NM_001127208.2	1417	Gtt/Att																																																																															
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs121913370		P-0041197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	15	271	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267480	198267480	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	41	437	0	ENST00000335508.6:c.1877A>G	p.Asn626Ser	p.N626S	ENST00000335508	NM_012433.2	626	aAc/aGc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28624238	28624238	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	38	580	0	ENST00000241453.7:c.736A>G	p.Thr246Ala	p.T246A	ENST00000241453	NM_004119.2	246	Aca/Gca																																																																															
STK11	6794	MSKCC	GRCh37	19	1220706	1220706	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	56	714	0	ENST00000326873.7:c.724G>C	p.Gly242Arg	p.G242R	ENST00000326873	NM_000455.4	242	Ggg/Cgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610149	10610166	+	inframe_deletion	In_Frame_Del	DEL	GATGCCGATGGCATTGCT	GATGCCGATGGCATTGCT	-			P-0041197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	91	896	0	ENST00000171111.5:c.544_561del	p.Ser182_Ile187del	p.S182_I187del	ENST00000171111	NM_203500.1	182	AGCAATGCCATCGGCATC/-																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379763	17379763	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	75	994	0	ENST00000359435.4:c.148G>T	p.Glu50Ter	p.E50*	ENST00000359435	NM_001033549.1	50	Gag/Tag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198281487	198281488	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATC			P-0041197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	35	523	0	ENST00000335508.6:c.643_644insGAT	p.Lys214_Leu215insArg	p.K214_L215insR	ENST00000335508	NM_012433.2	215	cta/cGATta																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426647	212426647	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	39	574	0	ENST00000342788.4:c.2468G>T	p.Trp823Leu	p.W823L	ENST00000342788	NM_005235.2	823	tGg/tTg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673085	30673085	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	55	666	0	ENST00000376406.3:c.3875G>T	p.Arg1292Leu	p.R1292L	ENST00000376406	NM_014641.2	1292	cGg/cTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0041102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	110	639	2	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604796	48604798	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0041102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	46	449	0	ENST00000342988.3:c.1619_1621delTTC	p.Leu540del	p.L540del	ENST00000342988	NM_005359.5	540	CTT/-																																																																															
JAK1	3716	MSKCC	GRCh37	1	65307172	65307172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	42	573	0	ENST00000342505.4:c.2516G>A	p.Arg839Gln	p.R839Q	ENST00000342505	NM_002227.2	839	cGa/cAa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692779	89692780	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	24	532	0	ENST00000371953.3:c.264dup	p.Pro89SerfsTer3	p.P89Sfs*3	ENST00000371953	NM_000314.4	88	tat/taTt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475046	40475046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	143	754	0	ENST00000264657.5:c.1864A>G	p.Thr622Ala	p.T622A	ENST00000264657	NM_139276.2	622	Act/Gct																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871068	12871068	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	125	425	0	ENST00000228872.4:c.295T>A	p.Cys99Ser	p.C99S	ENST00000228872	NM_004064.3	99	Tgc/Agc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701142	43701142	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0041103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	127	669	0	ENST00000382044.4:c.5553T>A	p.Tyr1851Ter	p.Y1851*	ENST00000382044	NM_001141980.1	1851	taT/taA																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732399	74732399	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	157	542	0	ENST00000359995.5:c.510G>T	p.Lys170Asn	p.K170N	ENST00000359995	NM_001195427.1	170	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0040984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	181	722	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478817	56478817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	93	701	0	ENST00000267101.3:c.273G>A	p.Met91Ile	p.M91I	ENST00000267101	NM_001982.3	91	atG/atA																																																																															
STK11	6794	MSKCC	GRCh37	19	1222987	1222987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	170	677	0	ENST00000326873.7:c.924G>T	p.Trp308Cys	p.W308C	ENST00000326873	NM_000455.4	308	tgG/tgT																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624949	9624949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	74	268	0	ENST00000353224.5:c.28G>A	p.Glu10Lys	p.E10K	ENST00000353224	NM_177990.2	10	Gaa/Aaa																																																																															
TET1	80312	MSKCC	GRCh37	10	70406445	70406445	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	174	747	0	ENST00000373644.4:c.3959G>T	p.Arg1320Leu	p.R1320L	ENST00000373644	NM_030625.2	1320	cGg/cTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3801794	3801794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	109	512	0	ENST00000262367.5:c.3712G>A	p.Glu1238Lys	p.E1238K	ENST00000262367	NM_004380.2	1238	Gag/Aag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222249	2222249	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	228	1005	0	ENST00000398665.3:c.3082del	p.Leu1028CysfsTer40	p.L1028Cfs*40	ENST00000398665	NM_032482.2	1027	gaC/ga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610338	10610338	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	239	943	3	ENST00000171111.5:c.372del	p.Ile125LeufsTer32	p.I125Lfs*32	ENST00000171111	NM_203500.1	124	tcC/tc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546715	9546715	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	74	375	0	ENST00000353224.5:c.1307T>A	p.Leu436Gln	p.L436Q	ENST00000353224	NM_177990.2	436	cTg/cAg																																																																															
BCL6	604	MSKCC	GRCh37	3	187444673	187444673	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	119	392	0	ENST00000232014.4:c.1554C>G	p.Phe518Leu	p.F518L	ENST00000232014	NM_001130845.1	518	ttC/ttG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0040994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	63	566	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106687	27106687	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	114	709	0	ENST00000324856.7:c.6298C>T	p.Gln2100Ter	p.Q2100*	ENST00000324856	NM_006015.4	2100	Cag/Tag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325945	65325945	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0040994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	20	404	0	ENST00000342505.4:c.1177G>T	p.Glu393Ter	p.E393*	ENST00000342505	NM_002227.2	393	Gaa/Taa																																																																															
CDH1	999	MSKCC	GRCh37	16	68844139	68844139	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	89	657	0	ENST00000261769.5:c.727G>T	p.Glu243Ter	p.E243*	ENST00000261769	NM_004360.3	243	Gag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164995	47165003	+	inframe_deletion	In_Frame_Del	DEL	ATATTTATC	ATATTTATC	-			P-0040994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	33	318	0	ENST00000409792.3:c.1123_1131del	p.Asp375_Tyr377del	p.D375_Y377del	ENST00000409792	NM_014159.6	375	GATAAATAT/-																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026871	71026871	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0040994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	53	282	0	ENST00000318789.4:c.1351G>C	p.Asp451His	p.D451H	ENST00000318789	NM_032682.5	451	Gat/Cat																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169993022	169993022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	21	316	0	ENST00000295797.4:c.652C>T	p.Pro218Ser	p.P218S	ENST00000295797	NM_002740.5	218	Cca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782596		P-0040995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	228	751	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45856060	45856060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	132	720	3	ENST00000391945.4:c.1846C>T	p.Arg616Trp	p.R616W	ENST00000391945	NM_000400.3	616	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038614-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			550	73	397	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0038614-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			613	74	461	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110063	115110063	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0038614-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			900	98	936	1	ENST00000257566.3:c.1815C>G	p.Tyr605Ter	p.Y605*	ENST00000257566	NM_016569.3	605	taC/taG																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986960	36986961	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0038614-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			706	62	659	0	ENST00000354822.5:c.728_729delinsTT	p.Arg243Leu	p.R243L	ENST00000354822	NM_001079668.2	243	cGC/cTT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602581	10602581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	198	712	1	ENST00000171111.5:c.997G>T	p.Gly333Cys	p.G333C	ENST00000171111	NM_203500.1	333	Ggc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0041007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	59	353	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46733165	46733165	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	170	451	0	ENST00000371975.4:c.926A>T	p.Tyr309Phe	p.Y309F	ENST00000371975	NM_003579.3	309	tAc/tTc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40477043	40477043	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	142	446	0	ENST00000264657.5:c.1402T>G	p.Cys468Gly	p.C468G	ENST00000264657	NM_139276.2	468	Tgt/Ggt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374890	45374890	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	41	474	0	ENST00000262160.6:c.953A>G	p.Asn318Ser	p.N318S	ENST00000262160	NM_005901.5	318	aAt/aGt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220375	1220413	+	inframe_deletion	In_Frame_Del	DEL	CTTCTGTCAGCTGATTGACGGCCTGGAGTACCTGCATAG	CTTCTGTCAGCTGATTGACGGCCTGGAGTACCTGCATAG	-			P-0041007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	128	581	0	ENST00000326873.7:c.469_507del	p.Phe157_Ser169del	p.F157_S169del	ENST00000326873	NM_000455.4	156	taCTTCTGTCAGCTGATTGACGGCCTGGAGTACCTGCATAGc/tac																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876508	35876508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	92	476	0	ENST00000303115.3:c.1300G>T	p.Gly434Cys	p.G434C	ENST00000303115	NM_002185.3	434	Ggt/Tgt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106522604	106522604	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	58	349	0	ENST00000359195.3:c.2581G>T	p.Asp861Tyr	p.D861Y	ENST00000359195	NM_002649.2	861	Gat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112154827	112154828	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0041014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	78	509	0	ENST00000257430.4:c.1100_1101del	p.Ser367CysfsTer10	p.S367Cfs*10	ENST00000257430	NM_000038.5	366	gaCTct/gact																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175857	24175859	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0041014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	70	634	0	ENST00000263121.7:c.1091_1093del	p.Lys364del	p.K364del	ENST00000263121	NM_003073.3	362	gAGAag/gag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221947	1221947	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0041014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	109	907	0	ENST00000326873.7:c.863-1G>T		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																																
PTEN	5728	MSKCC	GRCh37	10	89711973	89711975	+	inframe_deletion	In_Frame_Del	DEL	GAT	GAT	-			P-0041014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	42	313	0	ENST00000371953.3:c.595_597del	p.Met199del	p.M199del	ENST00000371953	NM_000314.4	197	aaGATg/aag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81939091	81939091	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0041014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	80	606	0	ENST00000359376.3:c.1446C>G	p.Tyr482Ter	p.Y482*	ENST00000359376	NM_002661.3	482	taC/taG																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602676	10602690	+	frameshift_variant	Frame_Shift_Del	DEL	AGGTAGTCCTTGCAG	AGGTAGTCCTTGCAG	TA			P-0041014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	109	870	3	ENST00000171111.5:c.888_902delinsTA	p.Cys297ArgfsTer16	p.C297Rfs*16	ENST00000171111	NM_203500.1	296	cgCTGCAAGGACTACCTg/cgTAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76778800	76778800	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	56	247	0	ENST00000373344.5:c.6779A>T	p.His2260Leu	p.H2260L	ENST00000373344	NM_000489.3	2260	cAc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	26	332	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0041033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	55	683	3	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0041055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	19	306	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TET2	54790	MSKCC	GRCh37	4	106156951	106156958	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGCTTA	CAAGCTTA	-			P-0041055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	28	345	0	ENST00000380013.4:c.1854_1861del	p.Gln618HisfsTer17	p.Q618Hfs*17	ENST00000380013	NM_001127208.2	618	CAAGCTTAc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0040844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	735	871	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0040844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	116	394	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	180	390	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711879	89711879	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	61	483	0	ENST00000371953.3:c.497T>G	p.Val166Gly	p.V166G	ENST00000371953	NM_000314.4	166	gTa/gGa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829029	72829029	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	82	853	0	ENST00000268489.5:c.7552C>T	p.Gln2518Ter	p.Q2518*	ENST00000268489	NM_006885.3	2518	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578438	7578440	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0040754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	389	938	0	ENST00000269305.4:c.490_492del	p.Lys164del	p.K164del	ENST00000269305	NM_001126112.2	164	AAG/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0040808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	191	742	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	94	405	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152201798	152201798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	66	337	2	ENST00000206249.3:c.652G>A	p.Asp218Asn	p.D218N	ENST00000206249	NM_000125.3	218	Gac/Aac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922980	44922983	+	frameshift_variant	Frame_Shift_Del	DEL	CACT	CACT	-			P-0040808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	190	306	0	ENST00000377967.4:c.1846_1849del	p.Thr616TyrfsTer8	p.T616Yfs*8	ENST00000377967	NM_021140.2	614	gCACTc/gc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141552	11141552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	195	787	0	ENST00000344626.4:c.3529G>T	p.Asp1177Tyr	p.D1177Y	ENST00000344626	NM_003072.3	1177	Gac/Tac																																																																															
CASP8	841	MSKCC	GRCh37	2	202141611	202141611	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	87	450	0	ENST00000358485.4:c.899A>G	p.Asn300Ser	p.N300S	ENST00000358485	NM_001080125.1	300	aAt/aGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938790	178938790	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	52	467	0	ENST00000263967.3:c.2032A>G	p.Lys678Glu	p.K678E	ENST00000263967	NM_006218.2	678	Aaa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938812	178938812	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	37	318	0	ENST00000263967.3:c.2054G>T	p.Gly685Val	p.G685V	ENST00000263967	NM_006218.2	685	gGc/gTc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	241	903	0	ENST00000267101.3:c.310G>C	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ctg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73342969	73342969	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	68	383	0	ENST00000377767.4:c.1837C>G	p.Leu613Val	p.L613V	ENST00000377767	NM_014953.3	613	Ctg/Gtg																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0040814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	255	229	2	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
CBL	867	MSKCC	GRCh37	11	119148890	119148890	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	87	296	0	ENST00000264033.4:c.1110A>C	p.Leu370Phe	p.L370F	ENST00000264033	NM_005188.3	370	ttA/ttC																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175850	176175850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	215	316	1	ENST00000367669.3:c.265C>T	p.His89Tyr	p.H89Y	ENST00000367669	NM_022457.5	89	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577606	7577606	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0040814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	310	534	0	ENST00000269305.4:c.675delT	p.Gly226AlafsTer21	p.G226Afs*21	ENST00000269305	NM_001126112.2	225	gtT/gt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162123	47162123	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1216047088		P-0040816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	22	393	0	ENST00000409792.3:c.4003C>T	p.Arg1335Cys	p.R1335C	ENST00000409792	NM_014159.6	1335	Cgt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1219336	1219336	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031393-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			476	146	749	0	ENST00000326873.7:c.388G>T	p.Glu130Ter	p.E130*	ENST00000326873	NM_000455.4	130	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0031393-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	103	391	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610285	10610285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031393-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			543	195	942	2	ENST00000171111.5:c.425C>T	p.Thr142Met	p.T142M	ENST00000171111	NM_203500.1	142	aCg/aTg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026115	71026115	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031393-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			291	183	412	0	ENST00000318789.4:c.1507C>T	p.Arg503Ter	p.R503*	ENST00000318789	NM_032682.5	503	Cga/Tga																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30105508	30105508	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031393-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			516	106	642	0	ENST00000331968.5:c.1178A>T	p.Asn393Ile	p.N393I	ENST00000331968	NM_002742.2	393	aAc/aTc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30312944	30312944	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031393-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			491	130	541	0	ENST00000262643.3:c.747G>T	p.Trp249Cys	p.W249C	ENST00000262643	NM_001238.2	249	tgG/tgT																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685307	86685307	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031393-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			188	44	178	0	ENST00000274376.6:c.3023A>G	p.Glu1008Gly	p.E1008G	ENST00000274376	NM_002890.2	1008	gAa/gGa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039686	47039686	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031393-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			239	159	436	0	ENST00000329236.7:c.904G>T	p.Glu302Ter	p.E302*	ENST00000329236	NM_001204466.1	302	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039523-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	255	398	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0039523-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			536	516	599	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707579	176707579	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039523-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			841	46	421	0	ENST00000439151.2:c.5636T>C	p.Ile1879Thr	p.I1879T	ENST00000439151	NM_022455.4	1879	aTt/aCt																																																																															
APC	324	MSKCC	GRCh37	5	112157650	112157650	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	10	358	0	ENST00000257430.4:c.1370C>A	p.Ser457Ter	p.S457*	ENST00000257430	NM_000038.5	457	tCa/tAa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1920217	1920217	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200784805		P-0040668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	165	651	0	ENST00000382891.5:c.1277C>T	p.Thr426Met	p.T426M	ENST00000382891	NM_133335.3	426	aCg/aTg																																																																															
JUN	3725	MSKCC	GRCh37	1	59248394	59248394	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	84	367	0	ENST00000371222.2:c.349G>T	p.Ala117Ser	p.A117S	ENST00000371222	NM_002228.3	117	Gcc/Tcc																																																																															
APC	324	MSKCC	GRCh37	5	112175643	112175643	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	52	327	0	ENST00000257430.4:c.4353del	p.Val1452TyrfsTer21	p.V1452Yfs*21	ENST00000257430	NM_000038.5	1451	gAa/ga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426016	49426017	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTGTT			P-0040668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	139	803	0	ENST00000301067.7:c.12467_12471dup	p.Pro4158AsnfsTer5	p.P4158Nfs*5	ENST00000301067	NM_003482.3	4157	-/AACAG																																																																															
MST1R	4486	MSKCC	GRCh37	3	49935063	49935063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	108	716	0	ENST00000296474.3:c.1936G>T	p.Gly646Cys	p.G646C	ENST00000296474	NM_002447.2	646	Ggc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	261	480	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0040694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	205	564	1	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
RB1	5925	MSKCC	GRCh37	13	48955538	48955538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	210	411	1	ENST00000267163.4:c.1654C>T	p.Arg552Ter	p.R552*	ENST00000267163	NM_000321.2	552	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984016	2984016	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	266	691	0	ENST00000396946.4:c.514G>T	p.Glu172Ter	p.E172*	ENST00000396946	NM_032415.4	172	Gag/Tag																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733527	85733527	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200837308		P-0040694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	50	498	1	ENST00000370580.1:c.485C>T	p.Thr162Met	p.T162M	ENST00000370580	NM_003921.4	162	aCg/aTg																																																																															
AKT3	10000	MSKCC	GRCh37	1	244006426	244006426	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0040694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	277	581	0	ENST00000263826.5:c.46+1G>T		p.X16_splice	ENST00000263826	NM_005465.4	16																																																																																
BRCA2	675	MSKCC	GRCh37	13	32913492	32913492	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0040694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	127	571	0	ENST00000380152.3:c.5000C>G	p.Ser1667Ter	p.S1667*	ENST00000380152		1667	tCa/tGa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246584	41246584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	294	699	0	ENST00000357654.3:c.964G>T	p.Ala322Ser	p.A322S	ENST00000357654	NM_007294.3	322	Gct/Tct																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99152220	99152220	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	81	403	0	ENST00000074304.5:c.299G>C	p.Ser100Thr	p.S100T	ENST00000074304	NM_001134224.1	100	aGt/aCt																																																																															
APC	324	MSKCC	GRCh37	5	112174211	112174212	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0040694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	133	490	1	ENST00000257430.4:c.2920_2921delinsTT	p.Gly974Phe	p.G974F	ENST00000257430	NM_000038.5	974	GGt/TTt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69005873	69005873	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	54	517	0	ENST00000288368.4:c.2284G>T	p.Glu762Ter	p.E762*	ENST00000288368	NM_024870.2	762	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0040696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	102	493	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
BLM	641	MSKCC	GRCh37	15	91328178	91328178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	121	485	0	ENST00000355112.3:c.2690C>T	p.Ser897Phe	p.S897F	ENST00000355112	NM_000057.2	897	tCc/tTc																																																																															
AR	367	MSKCC	GRCh37	X	66765325	66765325	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	148	819	0	ENST00000374690.3:c.337G>T	p.Glu113Ter	p.E113*	ENST00000374690	NM_000044.3	113	Gaa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023191	27023191	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	31	145	0	ENST00000324856.7:c.298del	p.Leu100Ter	p.L100*	ENST00000324856	NM_006015.4	99	gaC/ga																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103508437	103508437	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	80	306	0	ENST00000355739.4:c.503G>C	p.Arg168Thr	p.R168T	ENST00000355739	NM_000123.3	168	aGa/aCa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434824	110434824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	117	686	3	ENST00000375856.3:c.3577G>A	p.Gly1193Ser	p.G1193S	ENST00000375856	NM_003749.2	1193	Ggc/Agc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005077	150005077	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	98	552	0	ENST00000253339.5:c.1148G>C	p.Gly383Ala	p.G383A	ENST00000253339		383	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0040699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	46	747	0	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	37	444	0	ENST00000257430.4:c.4199del	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912654		P-0040699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	71	828	3	ENST00000269305.4:c.469G>A	p.Val157Ile	p.V157I	ENST00000269305	NM_001126112.2	157	Gtc/Atc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	49	619	0	ENST00000347630.2:c.397T>C	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	Ttc/Ctc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913399		P-0040764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	14	414	0	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0040768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	52	233	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	319	638	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	228	424	1	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154812	2154812	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	192	897	0	ENST00000434045.2:c.409G>C	p.Glu137Gln	p.E137Q	ENST00000434045	NM_001127598.1	137	Gag/Cag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435436	18435436	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	25	286	0	ENST00000266497.5:c.421T>A	p.Phe141Ile	p.F141I	ENST00000266497		141	Ttc/Atc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719424	190719424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	37	218	0	ENST00000441310.2:c.1426G>C	p.Asp476His	p.D476H	ENST00000441310	NM_000534.4	476	Gat/Cat																																																																															
APC	324	MSKCC	GRCh37	5	112173452	112173452	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	27	256	0	ENST00000257430.4:c.2161G>T	p.Gly721Ter	p.G721*	ENST00000257430	NM_000038.5	721	Gga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0040769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	438	409	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273306	55273306	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35918369		P-0040769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	427	538	0	ENST00000275493.2:c.3629C>T	p.Ala1210Val	p.A1210V	ENST00000275493	NM_005228.3	1210	gCa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	935	1045	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
RET	5979	MSKCC	GRCh37	10	43612068	43612068	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	336	900	0	ENST00000355710.3:c.2173G>T	p.Val725Phe	p.V725F	ENST00000355710	NM_020975.4	725	Gtt/Ttt																																																																															
IGF2	3481	MSKCC	GRCh37	11	2156689	2156689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	307	934	0	ENST00000434045.2:c.233G>A	p.Cys78Tyr	p.C78Y	ENST00000434045	NM_001127598.1	78	tGc/tAc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125513723	125513723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	343	478	1	ENST00000428830.2:c.851C>T	p.Ser284Leu	p.S284L	ENST00000428830	NM_001114121.2	284	tCa/tTa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488689	212488689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	207	558	0	ENST00000342788.4:c.2160G>T	p.Arg720Ser	p.R720S	ENST00000342788	NM_005235.2	720	agG/agT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038074-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	96	382	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038074-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			345	74	402	0	ENST00000342988.3:c.1051G>A	p.Asp351Asn	p.D351N	ENST00000342988	NM_005359.5	351	Gat/Aat																																																																															
ATM	472	MSKCC	GRCh37	11	108114767	108114767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038074-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			380	37	414	0	ENST00000278616.4:c.584C>T	p.Thr195Ile	p.T195I	ENST00000278616	NM_000051.3	195	aCc/aTc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864537	57864537	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038074-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			660	210	698	0	ENST00000228682.2:c.2014G>T	p.Gly672Ter	p.G672*	ENST00000228682	NM_005269.2	672	Gga/Tga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937424	32937434	+	frameshift_variant	Frame_Shift_Del	DEL	ATTGAGCGCAA	ATTGAGCGCAA	-			P-0038074-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	191	432	0	ENST00000380152.3:c.8087_8097del	p.Leu2696TyrfsTer3	p.L2696Yfs*3	ENST00000380152		2695	tcATTGAGCGCAAat/tcat																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438169	56438169	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038074-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			712	196	711	0	ENST00000407977.2:c.824G>T	p.Cys275Phe	p.C275F	ENST00000407977		275	tGt/tTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604721	48604721	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038074-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			310	31	372	0	ENST00000342988.3:c.1543A>G	p.Arg515Gly	p.R515G	ENST00000342988	NM_005359.5	515	Aga/Gga																																																																															
ETV1	2115	MSKCC	GRCh37	7	13978838	13978838	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038074-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	81	412	0	ENST00000405192.2:c.269A>C	p.Lys90Thr	p.K90T	ENST00000405192	NM_001163147.1	90	aAa/aCa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878052	151878052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038074-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			452	31	362	0	ENST00000262189.6:c.6893C>A	p.Pro2298His	p.P2298H	ENST00000262189	NM_170606.2	2298	cCc/cAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412605	63412605	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038074-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			646	57	583	0	ENST00000330258.3:c.562G>T	p.Glu188Ter	p.E188*	ENST00000330258	NM_152424.3	188	Gag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711883	89711886	+	frameshift_variant	Frame_Shift_Del	DEL	TATT	TATT	-			P-0039648-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			182	201	364	0	ENST00000371953.3:c.501_504del	p.Ile168ProfsTer14	p.I168Pfs*14	ENST00000371953	NM_000314.4	167	acTATT/ac																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946199	71946201	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0039648-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			396	301	631	0	ENST00000298229.2:c.2457_2459del	p.Gln819del	p.Q819del	ENST00000298229	NM_001567.3	819	CAG/-																																																																															
RB1	5925	MSKCC	GRCh37	13	48878076	48878087	+	inframe_deletion	In_Frame_Del	DEL	GCCGCCACCGCC	GCCGCCACCGCC	-			P-0039648-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			182	364	125	0	ENST00000267163.4:c.33_44del	p.Thr12_Ala15del	p.T12_A15del	ENST00000267163	NM_000321.2	10	GCCGCCACCGCC/-																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434556	110434557	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCT			P-0039648-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			764	188	437	0	ENST00000375856.3:c.3842_3844dup	p.Lys1281dup	p.K1281dup	ENST00000375856	NM_003749.2	1281	agc/aAGAgc																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873716	35873717	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATCT			P-0039648-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			788	303	454	1	ENST00000216797.5:c.131_134dup	p.Met45IlefsTer42	p.M45Ifs*42	ENST00000216797	NM_020529.2	45	atg/atAGATg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437508	56437508	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0039648-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			299	278	540	0	ENST00000407977.2:c.952+2T>A		p.X318_splice	ENST00000407977		318																																																																																
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0040528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	62	804	0	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0040528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	89	860	2	ENST00000397752.3:c.3028+1G>A		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
SPOP	8405	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	120	613	0	ENST00000347630.2:c.393G>C	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgC																																																																															
APC	324	MSKCC	GRCh37	5	112175650	112175651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	35	391	0	ENST00000257430.4:c.4364dup	p.Asn1455LysfsTer2	p.N1455Kfs*2	ENST00000257430	NM_000038.5	1453	-/A																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	113	535	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604701	48604701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	251	569	0	ENST00000342988.3:c.1523G>A	p.Gly508Asp	p.G508D	ENST00000342988	NM_005359.5	508	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427250	49427251	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC			P-0040531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	129	994	0	ENST00000301067.7:c.11235_11237dup	p.Gln3745dup	p.Q3745dup	ENST00000301067	NM_003482.3	3745	cac/caGCAc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47700117	47700117	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	132	622	0	ENST00000347630.2:c.56C>G	p.Ala19Gly	p.A19G	ENST00000347630	NM_001007230.1	19	gCt/gGt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212311	36212311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	238	1138	0	ENST00000222270.7:c.2062C>T	p.Pro688Ser	p.P688S	ENST00000222270	NM_014727.1	688	Cca/Tca																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62290777	62290777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	202	428	0	ENST00000508582.2:c.22G>A	p.Gly8Ser	p.G8S	ENST00000508582		8	Ggt/Agt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657674	37657674	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	182	530	0	ENST00000447079.4:c.2591A>T	p.Asn864Ile	p.N864I	ENST00000447079	NM_015083.1	864	aAc/aTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	198	530	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577567	7577567	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	217	771	0	ENST00000269305.4:c.714T>G	p.Cys238Trp	p.C238W	ENST00000269305	NM_001126112.2	238	tgT/tgG																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041630	14041630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	159	571	0	ENST00000311895.7:c.2177G>A	p.Arg726His	p.R726H	ENST00000311895	NM_005236.2	726	cGc/cAc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88659599	88659599	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	363	745	0	ENST00000372037.3:c.382A>G	p.Asn128Asp	p.N128D	ENST00000372037	NM_004329.2	128	Aat/Gat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974787	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCCGTGGCCAGCCAGTC	CGGCCGTGGCCAGCCAGTC	-			P-0040582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	161	274	1	ENST00000304494.5:c.40_58del	p.Asp14ArgfsTer6	p.D14Rfs*6	ENST00000304494	NM_000077.4	14	GACTGGCTGGCCACGGCCGcg/cg																																																																															
MED12	9968	MSKCC	GRCh37	X	70342374	70342374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	221	397	0	ENST00000374080.3:c.1265G>A	p.Arg422Gln	p.R422Q	ENST00000374080		422	cGg/cAg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37676268	37676268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	1246	616	0	ENST00000447079.4:c.3023G>A	p.Arg1008Gln	p.R1008Q	ENST00000447079	NM_015083.1	1008	cGg/cAg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344782	118344783	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	158	342	0	ENST00000534358.1:c.2914dup	p.Thr972AsnfsTer26	p.T972Nfs*26	ENST00000534358	NM_005933.3	970	gaa/gAaa																																																																															
AXL	558	MSKCC	GRCh37	19	41726609	41726609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	399	733	0	ENST00000301178.4:c.154G>A	p.Gly52Ser	p.G52S	ENST00000301178	NM_021913.4	52	Ggc/Agc																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778045	27778045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	574	478	0	ENST00000369163.2:c.194A>G	p.Lys65Arg	p.K65R	ENST00000369163	NM_003536.2	65	aAg/aGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	42	464	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0040592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	69	805	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220707	1220707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	105	731	1	ENST00000326873.7:c.725G>T	p.Gly242Val	p.G242V	ENST00000326873	NM_000455.4	242	gGg/gTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500891	8500891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	75	568	0	ENST00000356435.5:c.1991G>T	p.Gly664Val	p.G664V	ENST00000356435		664	gGa/gTa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412656	63412656	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	55	769	0	ENST00000330258.3:c.511G>T	p.Gly171Cys	p.G171C	ENST00000330258	NM_152424.3	171	Ggc/Tgc																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858095	152858095	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	77	962	0	ENST00000406277.2:c.520del	p.Asp174ThrfsTer170	p.D174Tfs*170	ENST00000406277	NM_152274.4	174	Gac/ac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624274	89624274	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0040595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	53	523	0	ENST00000371953.3:c.48T>A	p.Tyr16Ter	p.Y16*	ENST00000371953	NM_000314.4	16	taT/taA																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190405	32190405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	59	994	0	ENST00000375023.3:c.334G>A	p.Glu112Lys	p.E112K	ENST00000375023	NM_004557.3	112	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577104	7577106	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0040595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	111	918	0	ENST00000269305.4:c.832_834del	p.Pro278del	p.P278del	ENST00000269305	NM_001126112.2	278	CCT/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	522	785	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88651917	88651917	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	87	517	0	ENST00000372037.3:c.264A>C	p.Glu88Asp	p.E88D	ENST00000372037	NM_004329.2	88	gaA/gaC																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061257	38061257	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	567	825	0	ENST00000250448.2:c.732G>A	p.Trp244Ter	p.W244*	ENST00000250448	NM_004496.3	244	tgG/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112162944	112162944	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0040597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	194	367	0	ENST00000257430.4:c.1548+1del		p.K516fs	ENST00000257430	NM_000038.5	516	aaG/aa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508137	106508137	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	78	324	0	ENST00000359195.3:c.131T>C	p.Leu44Pro	p.L44P	ENST00000359195	NM_002649.2	44	cTg/cCg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38189093	38189093	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	192	573	0	ENST00000317025.8:c.921A>T	p.Glu307Asp	p.E307D	ENST00000317025	NM_023034.1	307	gaA/gaT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597401	10597401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	322	786	0	ENST00000171111.5:c.1802G>T	p.Arg601Leu	p.R601L	ENST00000171111	NM_203500.1	601	cGg/cTg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022532	12022532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	106	707	0	ENST00000396373.4:c.638C>T	p.Ser213Phe	p.S213F	ENST00000396373	NM_001987.4	213	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	231	488	0	ENST00000269305.4:c.673-2A>C		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21974720	21974721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	189	405	0	ENST00000304494.5:c.106dupG	p.Ala36GlyfsTer8	p.A36Gfs*8	ENST00000304494	NM_000077.4	36	gcg/gGcg																																																																															
ACVR1	90	MSKCC	GRCh37	2	158634747	158634747	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	28	405	0	ENST00000263640.3:c.439C>T	p.Arg147Ter	p.R147*	ENST00000263640	NM_001105.4	147	Cga/Tga																																																																															
CCND2	894	MSKCC	GRCh37	12	4388017	4388017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	152	501	0	ENST00000261254.3:c.503C>A	p.Pro168His	p.P168H	ENST00000261254	NM_001759.3	168	cCc/cAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18715666	18715666	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	100	324	0	ENST00000266497.5:c.3497C>A	p.Pro1166His	p.P1166H	ENST00000266497		1166	cCt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49442528	49442529	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	170	485	0	ENST00000301067.7:c.4044dup	p.Ser1349GlnfsTer2	p.S1349Qfs*2	ENST00000301067	NM_003482.3	1348	-/C																																																																															
DICER1	23405	MSKCC	GRCh37	14	95556929	95556929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	84	576	0	ENST00000343455.3:c.5675G>A	p.Gly1892Asp	p.G1892D	ENST00000343455	NM_177438.2	1892	gGt/gAt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15964751	15964751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	80	569	0	ENST00000268712.3:c.5845G>A	p.Glu1949Lys	p.E1949K	ENST00000268712	NM_006311.3	1949	Gaa/Aaa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600333	10600333	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	115	629	0	ENST00000171111.5:c.1522A>C	p.Ser508Arg	p.S508R	ENST00000171111	NM_203500.1	508	Agc/Cgc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99162534	99162534	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	75	280	0	ENST00000074304.5:c.1052C>T	p.Ser351Leu	p.S351L	ENST00000074304	NM_001134224.1	351	tCa/tTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187535345	187535345	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	259	453	0	ENST00000441802.2:c.9229G>C	p.Gly3077Arg	p.G3077R	ENST00000441802	NM_005245.3	3077	Ggt/Cgt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187554917	187554917	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	292	541	0	ENST00000441802.2:c.4244A>G	p.Lys1415Arg	p.K1415R	ENST00000441802	NM_005245.3	1415	aAa/aGa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176665292	176665292	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	68	462	0	ENST00000439151.2:c.3976C>G	p.Gln1326Glu	p.Q1326E	ENST00000439151	NM_022455.4	1326	Cag/Gag																																																																															
EZH2	2146	MSKCC	GRCh37	7	148516774	148516774	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	59	317	0	ENST00000320356.2:c.913C>G	p.His305Asp	p.H305D	ENST00000320356	NM_004456.4	305	Cat/Gat																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38178602	38178602	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	185	464	0	ENST00000317025.8:c.1797C>G	p.Ile599Met	p.I599M	ENST00000317025	NM_023034.1	599	atC/atG																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341940	8341940	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	220	373	0	ENST00000356435.5:c.4700A>T	p.Asp1567Val	p.D1567V	ENST00000356435		1567	gAt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0040642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	280	577	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4110623	4110623	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201129499		P-0040642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	207	553	1	ENST00000262948.5:c.334C>T	p.Arg112Trp	p.R112W	ENST00000262948	NM_030662.3	112	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0040642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	84	286	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256751	16256751	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199784733		P-0040642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	145	529	1	ENST00000375759.3:c.4016G>A	p.Arg1339His	p.R1339H	ENST00000375759	NM_015001.2	1339	cGt/cAt																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965421	18965421	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	81	369	0	ENST00000262803.5:c.1168G>C	p.Glu390Gln	p.E390Q	ENST00000262803	NM_002911.3	390	Gag/Cag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89869687	89869687	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	73	510	0	ENST00000389301.3:c.772G>C	p.Glu258Gln	p.E258Q	ENST00000389301	NM_000135.2	258	Gag/Cag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18963805	18963806	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0040642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	22	356	0	ENST00000262803.5:c.982_983del	p.Asn328HisfsTer10	p.N328Hfs*10	ENST00000262803	NM_002911.3	328	AAc/c																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827951	40827951	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	94	500	0	ENST00000373198.4:c.2477C>A	p.Pro826His	p.P826H	ENST00000373198	NM_133170.3	826	cCc/cAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535306	66535306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	186	536	0	ENST00000273854.3:c.155C>T	p.Thr52Ile	p.T52I	ENST00000273854	NM_004439.5	52	aCc/aTc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740356	145740356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	284	695	0	ENST00000428558.2:c.1584G>T	p.Leu528Phe	p.L528F	ENST00000428558	NM_004260.3	528	ttG/ttT																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683697	162683697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	71	473	0	ENST00000366898.1:c.272C>T	p.Ala91Val	p.A91V	ENST00000366898	NM_004562.2	91	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	336	683	0	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242475	+	protein_altering_variant	In_Frame_Del	DEL	GAATTAAGAG	GAATTAAGAG	C			P-0040684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	388	420	1	ENST00000275493.2:c.2236_2245delinsC	p.Glu746_Glu749delinsGln	p.E746_E749delinsQ	ENST00000275493	NM_005228.3	746	GAATTAAGAGaa/Caa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367345	50367345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	64	427	0	ENST00000331340.3:c.152G>A	p.Arg51Lys	p.R51K	ENST00000331340	NM_006060.4	51	aGa/aAa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18534710	18534710	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	32	392	0	ENST00000266497.5:c.1768C>G	p.Leu590Val	p.L590V	ENST00000266497		590	Ctc/Gtc																																																																															
MGA	23269	MSKCC	GRCh37	15	42058213	42058213	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	49	266	0	ENST00000219905.7:c.7933T>G	p.Leu2645Val	p.L2645V	ENST00000219905	NM_001164273.1	2645	Tta/Gta																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0040685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	72	273	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0040685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	126	366	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119884	70119884	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	44	537	1	ENST00000245479.2:c.886C>T	p.Gln296Ter	p.Q296*	ENST00000245479	NM_000346.3	296	Cag/Tag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157469956	157469956	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	177	493	1	ENST00000346085.5:c.2754delC	p.Ser919ValfsTer20	p.S919Vfs*20	ENST00000346085	NM_020732.3	917	aCc/ac																																																																															
PGR	5241	MSKCC	GRCh37	11	100933481	100933481	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0040685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	38	180	0	ENST00000325455.5:c.1909C>G	p.Arg637Gly	p.R637G	ENST00000325455	NM_001202474.3	637	Cga/Gga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577113	7577114	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	268	640	0	ENST00000269305.4:c.824dup	p.Cys275TrpfsTer31	p.C275Wfs*31	ENST00000269305	NM_001126112.2	275	tgt/tgGt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489513	40489513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	54	536	0	ENST00000264657.5:c.737G>A	p.Arg246Gln	p.R246Q	ENST00000264657	NM_139276.2	246	cGg/cAg																																																																															
RB1	5925	MSKCC	GRCh37	13	48939047	48939047	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	18	173	0	ENST00000267163.4:c.879C>A	p.Phe293Leu	p.F293L	ENST00000267163	NM_000321.2	293	ttC/ttA																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127916015	127916015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	25	256	0	ENST00000373547.4:c.466G>A	p.Asp156Asn	p.D156N	ENST00000373547	NM_002721.4	156	Gat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0040652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	258	83	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16041510	16041510	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0040652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	78	187	0	ENST00000268712.3:c.1369A>T	p.Lys457Ter	p.K457*	ENST00000268712	NM_006311.3	457	Aaa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0040656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	87	233	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0040656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	157	502	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112174973	112174973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	175	70	0	ENST00000257430.4:c.3682C>T	p.Gln1228Ter	p.Q1228*	ENST00000257430	NM_000038.5	1228	Cag/Tag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43766907	43766907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	64	207	0	ENST00000382044.4:c.1144G>A	p.Val382Ile	p.V382I	ENST00000382044	NM_001141980.1	382	Gtt/Att																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561217	9561217	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	28	333	0	ENST00000353224.5:c.565A>G	p.Lys189Glu	p.K189E	ENST00000353224	NM_177990.2	189	Aaa/Gaa																																																																															
EP300	2033	MSKCC	GRCh37	22	41554496	41554496	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0040656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	320	101	0	ENST00000263253.7:c.3582C>G	p.Tyr1194Ter	p.Y1194*	ENST00000263253	NM_001429.3	1194	taC/taG																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405927	157405928	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	115	443	0	ENST00000346085.5:c.2170dup	p.Ala724GlyfsTer39	p.A724Gfs*39	ENST00000346085	NM_020732.3	723	-/G																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968137	68968137	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	46	449	0	ENST00000288368.4:c.1166T>A	p.Met389Lys	p.M389K	ENST00000288368	NM_024870.2	389	aTg/aAg																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	108	919	2	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	119	811	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	62	370	1	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	59	378	1	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	131	409	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	71	505	8	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968322	2968323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	98	772	0	ENST00000396946.4:c.1663dupC	p.Arg555ProfsTer38	p.R555Pfs*38	ENST00000396946	NM_032415.4	555	cgg/cCgg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	41	602	2	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	103	478	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144049	11144051	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	142	795	1	ENST00000344626.4:c.3634_3636del	p.Glu1212del	p.E1212del	ENST00000344626	NM_003072.3	1210	gtGGAg/gtg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14042043	14042043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	364	59	0	ENST00000311895.7:c.2590C>T	p.Arg864Cys	p.R864C	ENST00000311895	NM_005236.2	864	Cgc/Tgc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349641	89349641	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1064796815		P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	140	877	6	ENST00000301030.4:c.3309del	p.Asp1104MetfsTer214	p.D1104Mfs*214	ENST00000301030	NM_001256183.1	1103	aaA/aa																																																																															
CASP8	841	MSKCC	GRCh37	2	202149917	202149917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	129	668	1	ENST00000358485.4:c.1358C>T	p.Pro453Leu	p.P453L	ENST00000358485	NM_001080125.1	453	cCg/cTg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570292	87570292	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1463968979		P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	98	606	0	ENST00000277120.3:c.2032G>A	p.Ala678Thr	p.A678T	ENST00000277120		678	Gcg/Acg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257366	19257366	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	105	797	1	ENST00000162023.5:c.767delC	p.Pro256GlnfsTer?	p.P256Qfs*?	ENST00000162023		256	cCa/ca																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7989406	7989406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs8077661		P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	888	151	0	ENST00000319144.4:c.280G>A	p.Gly94Ser	p.G94S	ENST00000319144	NM_001139.2	94	Ggc/Agc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245795	5245795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	133	794	0	ENST00000357368.4:c.980C>T	p.Thr327Met	p.T327M	ENST00000357368	NM_002850.3	327	aCg/aTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89335037	89335037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	262	45	0	ENST00000301030.4:c.7841C>T	p.Ala2614Val	p.A2614V	ENST00000301030	NM_001256183.1	2614	gCg/gTg																																																																															
ERG	2078	MSKCC	GRCh37	21	39755427	39755427	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	69	616	2	ENST00000288319.7:c.1338delT	p.Phe446LeufsTer59	p.F446Lfs*59	ENST00000288319	NM_182918.3	446	ttT/tt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554356	63554357	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	109	678	0	ENST00000307078.5:c.382_383del	p.Leu128ThrfsTer12	p.L128Tfs*12	ENST00000307078	NM_004655.3	128	TTa/a																																																																															
MSH2	4436	MSKCC	GRCh37	2	47656969	47656969	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	56	400	0	ENST00000233146.2:c.1165C>T	p.Arg389Ter	p.R389*	ENST00000233146	NM_000251.2	389	Cga/Tga																																																																															
MGA	23269	MSKCC	GRCh37	15	42052632	42052632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	98	535	1	ENST00000219905.7:c.7303C>T	p.Arg2435Trp	p.R2435W	ENST00000219905	NM_001164273.1	2435	Cgg/Tgg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2954975	2954975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	123	764	0	ENST00000396946.4:c.2735G>A	p.Arg912Gln	p.R912Q	ENST00000396946	NM_032415.4	912	cGg/cAg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564755	139564755	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	124	884	1	ENST00000308874.7:c.549del	p.Arg184GlyfsTer13	p.R184Gfs*13	ENST00000308874		182	Ccc/cc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288998	33288998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	93	601	1	ENST00000374542.5:c.554G>A	p.Arg185Gln	p.R185Q	ENST00000374542	NM_001141970.1	185	cGg/cAg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2963988	2963988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	84	668	0	ENST00000396946.4:c.1819G>A	p.Glu607Lys	p.E607K	ENST00000396946	NM_032415.4	607	Gaa/Aaa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120529603	120529603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	91	542	2	ENST00000256646.2:c.854G>A	p.Arg285His	p.R285H	ENST00000256646	NM_024408.3	285	cGc/cAc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628072	90628072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	129	860	6	ENST00000330062.3:c.1247C>T	p.Ala416Val	p.A416V	ENST00000330062	NM_002168.2	416	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445500	49445500	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	114	919	1	ENST00000301067.7:c.1966delC	p.Leu656CysfsTer274	p.L656Cfs*274	ENST00000301067	NM_003482.3	656	Ctg/tg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468398	89468398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	30	285	0	ENST00000336596.2:c.1938delA	p.Glu647ArgfsTer9	p.E647Rfs*9	ENST00000336596	NM_005233.5	644	tcA/tc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	148	968	5	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795061	242795061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	137	1045	2	ENST00000334409.5:c.148G>A	p.Ala50Thr	p.A50T	ENST00000334409	NM_005018.2	50	Gcc/Acc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7982767	7982767	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	129	790	0	ENST00000319144.4:c.1018delC	p.Leu340SerfsTer12	p.L340Sfs*12	ENST00000319144	NM_001139.2	340	Ctc/tc																																																																															
B2M	567	MSKCC	GRCh37	15	45007752	45007753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	67	376	1	ENST00000558401.1:c.204dup	p.Val69SerfsTer21	p.V69Sfs*21	ENST00000558401	NM_004048.2	67	gaa/gAaa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99185045	99185045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	60	447	1	ENST00000074304.5:c.2447C>T	p.Thr816Met	p.T816M	ENST00000074304	NM_001134224.1	816	aCg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424970	49424970	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783691		P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	132	759	1	ENST00000301067.7:c.13518del	p.Ser4507AlafsTer12	p.S4507Afs*12	ENST00000301067	NM_003482.3	4506	ccC/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437711	49437713	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	100	767	0	ENST00000301067.7:c.5257_5259del	p.Lys1753del	p.K1753del	ENST00000301067	NM_003482.3	1753	AAG/-																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99478548	99478548	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	53	325	0	ENST00000268035.6:c.3190C>T	p.Arg1064Ter	p.R1064*	ENST00000268035	NM_000875.3	1064	Cga/Tga																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874166	155874166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	85	673	0	ENST00000368323.3:c.365G>A	p.Arg122Gln	p.R122Q	ENST00000368323	NM_006912.5	122	cGa/cAa																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169985727	169985727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	99	511	0	ENST00000295797.4:c.389G>A	p.Arg130His	p.R130H	ENST00000295797	NM_002740.5	130	cGc/cAc																																																																															
INSR	3643	MSKCC	GRCh37	19	7122996	7122996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	127	790	1	ENST00000302850.5:c.3263G>A	p.Arg1088His	p.R1088H	ENST00000302850	NM_000208.2	1088	cGc/cAc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117859930	117859930	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	25	218	0	ENST00000297338.2:c.1705C>T	p.Arg569Cys	p.R569C	ENST00000297338	NM_006265.2	569	Cgt/Tgt																																																																															
INSR	3643	MSKCC	GRCh37	19	7267470	7267470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	114	641	0	ENST00000302850.5:c.538G>A	p.Glu180Lys	p.E180K	ENST00000302850	NM_000208.2	180	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630906	187630906	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	99	544	0	ENST00000441802.2:c.76C>T	p.Arg26Ter	p.R26*	ENST00000441802	NM_005245.3	26	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229336	36229336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	93	663	1	ENST00000222270.7:c.8026G>A	p.Ala2676Thr	p.A2676T	ENST00000222270	NM_014727.1	2676	Gcc/Acc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40709549	40709549	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	71	558	1	ENST00000373198.4:c.4353G>T	p.Glu1451Asp	p.E1451D	ENST00000373198	NM_133170.3	1451	gaG/gaT																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701242	43701242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	91	638	0	ENST00000382044.4:c.5453G>A	p.Arg1818Gln	p.R1818Q	ENST00000382044	NM_001141980.1	1818	cGg/cAg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141551418	141551418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	78	660	0	ENST00000220592.5:c.1879G>A	p.Ala627Thr	p.A627T	ENST00000220592	NM_012154.3	627	Gcc/Acc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17117006	17117006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	95	700	2	ENST00000285071.4:c.1703C>T	p.Thr568Met	p.T568M	ENST00000285071	NM_144997.5	568	aCg/aTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868219	37868219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	126	696	0	ENST00000269571.5:c.940G>A	p.Val314Ile	p.V314I	ENST00000269571		314	Gtc/Atc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40456593	40456593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	131	781	1	ENST00000345506.4:c.1303G>A	p.Val435Met	p.V435M	ENST00000345506	NM_003152.3	435	Gtg/Atg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40468878	40468878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	71	393	1	ENST00000264657.5:c.2186G>A	p.Arg729His	p.R729H	ENST00000264657	NM_139276.2	729	cGc/cAc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554128	63554128	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	755	112	0	ENST00000307078.5:c.611del	p.Gly204GlufsTer7	p.G204Efs*7	ENST00000307078	NM_004655.3	204	gGa/ga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11151999	11151999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	70	572	0	ENST00000344626.4:c.4187C>T	p.Thr1396Met	p.T1396M	ENST00000344626	NM_003072.3	1396	aCg/aTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152170	11152170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	105	730	0	ENST00000344626.4:c.4358C>A	p.Pro1453His	p.P1453H	ENST00000344626	NM_003072.3	1453	cCt/cAt																																																																															
UPF1	5976	MSKCC	GRCh37	19	18971731	18971731	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	747	158	1	ENST00000262803.5:c.2397G>T	p.Gln799His	p.Q799H	ENST00000262803	NM_002911.3	799	caG/caT																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855888	45855888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	158	845	1	ENST00000391945.4:c.1922G>A	p.Arg641Gln	p.R641Q	ENST00000391945	NM_000400.3	641	cGg/cAg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25994394	25994394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	62	325	0	ENST00000435504.4:c.419C>T	p.Pro140Leu	p.P140L	ENST00000435504		140	cCg/cTg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561397	9561397	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	570	58	0	ENST00000353224.5:c.385T>A	p.Ser129Thr	p.S129T	ENST00000353224	NM_177990.2	129	Tcc/Acc																																																																															
SRC	6714	MSKCC	GRCh37	20	36012606	36012606	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	71	424	0	ENST00000358208.4:c.50G>T	p.Ser17Ile	p.S17I	ENST00000358208		17	aGc/aTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499430	89499430	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	69	513	1	ENST00000336596.2:c.2600A>G	p.Asn867Ser	p.N867S	ENST00000336596	NM_005233.5	867	aAc/aGc																																																																															
ATR	545	MSKCC	GRCh37	3	142257375	142257375	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	82	511	0	ENST00000350721.4:c.3674T>C	p.Ile1225Thr	p.I1225T	ENST00000350721	NM_001184.3	1225	aTc/aCc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185183639	185183641	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	81	402	0	ENST00000265026.3:c.1495_1497del	p.Glu499del	p.E499del	ENST00000265026	NM_004721.4	498	aAGGag/aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518873	187518873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	92	572	0	ENST00000441802.2:c.12331G>A	p.Ala4111Thr	p.A4111T	ENST00000441802	NM_005245.3	4111	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112102098	112102098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	29	288	0	ENST00000257430.4:c.211C>T	p.Arg71Cys	p.R71C	ENST00000257430	NM_000038.5	71	Cgt/Tgt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056387	26056387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	67	427	0	ENST00000343677.2:c.270G>T	p.Lys90Asn	p.K90N	ENST00000343677	NM_005319.3	90	aaG/aaT																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023181	150023181	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs191160444		P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	64	627	0	ENST00000253339.5:c.82C>T	p.Arg28Trp	p.R28W	ENST00000253339		28	Cgg/Tgg																																																																															
SMO	6608	MSKCC	GRCh37	7	128850934	128850934	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	672	101	0	ENST00000249373.3:c.1781T>C	p.Val594Ala	p.V594A	ENST00000249373	NM_005631.4	594	gTg/gCg																																																																															
BRAF	673	MSKCC	GRCh37	7	140500178	140500178	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762305547		P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1117	168	879	1	ENST00000288602.6:c.964G>A	p.Ala322Thr	p.A322T	ENST00000288602	NM_004333.4	322	Gcc/Acc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859843	151859845	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	49	392	0	ENST00000262189.6:c.10817_10819del	p.Arg3606del	p.R3606del	ENST00000262189	NM_170606.2	3606	aGAAca/aca																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38194865	38194865	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	721	103	0	ENST00000317025.8:c.868A>C	p.Ser290Arg	p.S290R	ENST00000317025	NM_023034.1	290	Agt/Cgt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38194927	38194927	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	742	133	2	ENST00000317025.8:c.806A>G	p.Gln269Arg	p.Q269R	ENST00000317025	NM_023034.1	269	cAg/cGg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135779093	135779093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	88	490	1	ENST00000298552.3:c.2153G>A	p.Arg718Gln	p.R718Q	ENST00000298552	NM_001162426.1	718	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			873	72	872	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			523	28	421	1	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602413	10602413	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			828	60	849	0	ENST00000171111.5:c.1165G>T	p.Asp389Tyr	p.D389Y	ENST00000171111	NM_203500.1	389	Gac/Tac																																																																															
MGA	23269	MSKCC	GRCh37	15	42041116	42041116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			653	39	613	0	ENST00000219905.7:c.5494C>T	p.Arg1832Trp	p.R1832W	ENST00000219905	NM_001164273.1	1832	Cgg/Tgg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838362	156838362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			901	65	939	1	ENST00000524377.1:c.640C>T	p.Arg214Trp	p.R214W	ENST00000524377	NM_002529.3	214	Cgg/Tgg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17743054	17743054	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			650	38	722	0	ENST00000250003.3:c.962G>C	p.Ter321SerextTer33	p.*321Sext*33	ENST00000250003	NM_002478.4	321	tGa/tCa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444304	49444304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	82	981	0	ENST00000301067.7:c.3067C>A	p.Gln1023Lys	p.Q1023K	ENST00000301067	NM_003482.3	1023	Cag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444475	49444475	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			807	49	735	0	ENST00000301067.7:c.2896del	p.Asp966ThrfsTer34	p.D966Tfs*34	ENST00000301067	NM_003482.3	966	Gac/ac																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863482	57863482	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			581	37	493	0	ENST00000228682.2:c.1576+1G>T		p.X526_splice	ENST00000228682	NM_005269.2	526																																																																																
GLI1	2735	MSKCC	GRCh37	12	57865257	57865257	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			860	52	769	0	ENST00000228682.2:c.2734G>C	p.Gly912Arg	p.G912R	ENST00000228682	NM_005269.2	912	Ggt/Cgt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857919	9857919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			776	42	691	0	ENST00000330684.3:c.3482G>T	p.Gly1161Val	p.G1161V	ENST00000330684	NM_001134407.1	1161	gGg/gTg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58700968	58700968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			827	136	714	0	ENST00000305921.3:c.559G>A	p.Val187Ile	p.V187I	ENST00000305921	NM_003620.3	187	Gta/Ata																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120182	70120182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			505	54	499	0	ENST00000245479.2:c.1184C>T	p.Thr395Met	p.T395M	ENST00000245479	NM_000346.3	395	aCg/aTg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39250094	39250094	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			659	55	629	0	ENST00000402219.2:c.1475A>C	p.Glu492Ala	p.E492A	ENST00000402219	NM_005633.3	492	gAa/gCa																																																																															
CASP8	841	MSKCC	GRCh37	2	202139654	202139654	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			470	35	387	0	ENST00000358485.4:c.815G>C	p.Arg272Thr	p.R272T	ENST00000358485	NM_001080125.1	272	aGa/aCa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295808	212295808	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			696	48	515	0	ENST00000342788.4:c.2505A>T	p.Glu835Asp	p.E835D	ENST00000342788	NM_005235.2	835	gaA/gaT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827976	40827976	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			638	41	600	2	ENST00000373198.4:c.2452G>T	p.Gly818Trp	p.G818W	ENST00000373198	NM_133170.3	818	Ggg/Tgg																																																																															
ATR	545	MSKCC	GRCh37	3	142269117	142269117	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			627	36	408	0	ENST00000350721.4:c.2833C>G	p.Gln945Glu	p.Q945E	ENST00000350721	NM_001184.3	945	Cag/Gag																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99823085	99823085	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			474	26	382	0	ENST00000280892.6:c.127G>C	p.Glu43Gln	p.E43Q	ENST00000280892	NM_001130678.1	43	Gaa/Caa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540194	187540194	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			642	36	621	0	ENST00000441802.2:c.7546A>T	p.Thr2516Ser	p.T2516S	ENST00000441802	NM_005245.3	2516	Act/Tct																																																																															
LYN	4067	MSKCC	GRCh37	8	56879313	56879313	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			896	144	794	0	ENST00000519728.1:c.830T>G	p.Leu277Arg	p.L277R	ENST00000519728	NM_002350.3	277	cTg/cGg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135801127	135801127	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			377	24	313	0	ENST00000298552.3:c.211-1G>A		p.X71_splice	ENST00000298552	NM_001162426.1	71																																																																																
ARAF	369	MSKCC	GRCh37	X	47430758	47430758	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			421	57	438	0	ENST00000377045.4:c.1723C>G	p.Pro575Ala	p.P575A	ENST00000377045	NM_001654.4	575	Ccc/Gcc																																																																															
ATRX	546	MSKCC	GRCh37	X	76938665	76938665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	39	339	0	ENST00000373344.5:c.2083G>A	p.Val695Met	p.V695M	ENST00000373344	NM_000489.3	695	Gtg/Atg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123224776	123224776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			307	90	285	1	ENST00000218089.9:c.3540G>A	p.Met1180Ile	p.M1180I	ENST00000218089	NM_001042749.1	1180	atG/atA																																																																															
PARK2	5071	MSKCC	GRCh37	6	161807867	161807867	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			599	35	607	0	ENST00000366898.1:c.1126del	p.Glu376SerfsTer59	p.E376Sfs*59	ENST00000366898	NM_004562.2	376	Gag/ag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602581	10602581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	213	809	0	ENST00000171111.5:c.997G>T	p.Gly333Cys	p.G333C	ENST00000171111	NM_203500.1	333	Ggc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42003545	42003545	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0040473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	34	418	0	ENST00000219905.7:c.3082C>G	p.Gln1028Glu	p.Q1028E	ENST00000219905	NM_001164273.1	1028	Caa/Gaa																																																																															
SRC	6714	MSKCC	GRCh37	20	36024580	36024580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	99	822	0	ENST00000358208.4:c.569C>T	p.Ser190Leu	p.S190L	ENST00000358208		190	tCa/tTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1221975	1221975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	157	745	0	ENST00000326873.7:c.890G>T	p.Arg297Met	p.R297M	ENST00000326873	NM_000455.4	297	aGg/aTg																																																																															
IGF2	3481	MSKCC	GRCh37	11	2161492	2161492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	42	652	0	ENST00000434045.2:c.35C>T	p.Ala12Val	p.A12V	ENST00000434045	NM_001127598.1	12	gCc/gTc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953133	81953133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	76	338	0	ENST00000359376.3:c.2099G>T	p.Arg700Leu	p.R700L	ENST00000359376	NM_002661.3	700	cGg/cTg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30325810	30325810	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	80	338	0	ENST00000322652.5:c.2008A>G	p.Ser670Gly	p.S670G	ENST00000322652	NM_015355.2	670	Agc/Ggc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40861956	40861956	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0040473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	27	394	0	ENST00000428826.2:c.1402-1G>A		p.X468_splice	ENST00000428826		468																																																																																
APC	324	MSKCC	GRCh37	5	112175211	112175211	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	57	239	0	ENST00000257430.4:c.3920T>G	p.Ile1307Arg	p.I1307R	ENST00000257430	NM_000038.5	1307	aTa/aGa																																																																															
APC	324	MSKCC	GRCh37	5	112175226	112175226	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	64	248	0	ENST00000257430.4:c.3935G>T	p.Gly1312Val	p.G1312V	ENST00000257430	NM_000038.5	1312	gGa/gTa																																																																															
STK19	8859	MSKCC	GRCh37	6	31939840	31939840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	136	805	2	ENST00000375331.2:c.67C>T	p.Arg23Trp	p.R23W	ENST00000375331	NM_004197.1	23	Cgg/Tgg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100003	157100003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	20	52	1	ENST00000346085.5:c.940G>A	p.Gly314Ser	p.G314S	ENST00000346085	NM_020732.3	314	Ggc/Agc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	53	388	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CD79A	973	MSKCC	GRCh37	19	42383707	42383707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	54	556	0	ENST00000221972.3:c.482C>T	p.Thr161Met	p.T161M	ENST00000221972	NM_021601.3	161	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822609	72822609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	51	567	0	ENST00000268489.5:c.9566C>T	p.Ala3189Val	p.A3189V	ENST00000268489	NM_006885.3	3189	gCg/gTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032377	10032377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	24	426	0	ENST00000330684.3:c.446C>T	p.Ala149Val	p.A149V	ENST00000330684	NM_001134407.1	149	gCg/gTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439922	56439923	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGGCACCGGATGC			P-0040607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	71	587	0	ENST00000407977.2:c.656_669dup	p.Pro224AlafsTer200	p.P224Afs*200	ENST00000407977		223	-/GCATCCGGTGCCGC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591924	48591924	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	37	410	0	ENST00000342988.3:c.1087T>G	p.Cys363Gly	p.C363G	ENST00000342988	NM_005359.5	363	Tgt/Ggt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164671	36164671	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	76	677	0	ENST00000300305.3:c.1204T>G	p.Ser402Ala	p.S402A	ENST00000300305		402	Tcc/Gcc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087555	27087555	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	79	688	1	ENST00000324856.7:c.2129G>T	p.Arg710Leu	p.R710L	ENST00000324856	NM_006015.4	710	cGc/cTc																																																																															
FH	2271	MSKCC	GRCh37	1	241665804	241665804	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	110	477	0	ENST00000366560.3:c.1175T>C	p.Val392Ala	p.V392A	ENST00000366560	NM_000143.3	392	gTt/gCt																																																																															
PGR	5241	MSKCC	GRCh37	11	100912720	100912720	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	51	434	0	ENST00000325455.5:c.2602C>G	p.Gln868Glu	p.Q868E	ENST00000325455	NM_001202474.3	868	Cag/Gag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435461	18435461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	158	281	0	ENST00000266497.5:c.446C>A	p.Thr149Lys	p.T149K	ENST00000266497		149	aCa/aAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	486	441	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112892484	112892484	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	48	373	0	ENST00000351677.2:c.642G>C	p.Gln214His	p.Q214H	ENST00000351677	NM_002834.3	214	caG/caC																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103528066	103528066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	195	379	1	ENST00000355739.4:c.3374G>T	p.Ser1125Ile	p.S1125I	ENST00000355739	NM_000123.3	1125	aGt/aTt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436252	110436252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	38	378	0	ENST00000375856.3:c.2149G>T	p.Gly717Cys	p.G717C	ENST00000375856	NM_003749.2	717	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	317	749	1	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523051	25523051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	93	740	0	ENST00000264709.3:c.134C>T	p.Ala45Val	p.A45V	ENST00000264709	NM_175629.2	45	gCa/gTa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010532	48010532	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	119	593	0	ENST00000234420.5:c.162del	p.Pro55LeufsTer26	p.P55Lfs*26	ENST00000234420	NM_000179.2	54	Ggg/gg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662127	227662127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	217	702	0	ENST00000305123.5:c.1328G>T	p.Arg443Leu	p.R443L	ENST00000305123	NM_005544.2	443	cGc/cTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448529	89448529	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	226	503	0	ENST00000336596.2:c.1493G>T	p.Ser498Ile	p.S498I	ENST00000336596	NM_005233.5	498	aGc/aTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244091	153244091	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	250	458	0	ENST00000281708.4:c.2066G>T	p.Arg689Leu	p.R689L	ENST00000281708	NM_033632.3	689	cGg/cTg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876137	35876138	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	222	512	1	ENST00000303115.3:c.929_930delinsTT	p.Arg310Ile	p.R310I	ENST00000303115	NM_002185.3	310	aGG/aTT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180951	32180951	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	326	686	1	ENST00000375023.3:c.2399C>A	p.Pro800Gln	p.P800Q	ENST00000375023	NM_004557.3	800	cCg/cAg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730031	41730032	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	203	613	0	ENST00000242208.4:c.497_498delinsAT	p.Arg166Asn	p.R166N	ENST00000242208	NM_002192.2	166	aGG/aAT																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38287391	38287391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	187	615	2	ENST00000425967.3:c.266G>A	p.Arg89Gln	p.R89Q	ENST00000425967	NM_001174067.1	89	cGg/cAg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372550	55372550	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	228	797	0	ENST00000297316.4:c.1240G>C	p.Val414Leu	p.V414L	ENST00000297316	NM_022454.3	414	Gtg/Ctg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376683	8376683	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	57	558	1	ENST00000356435.5:c.4430A>T	p.His1477Leu	p.H1477L	ENST00000356435		1477	cAc/cTc																																																																															
AR	367	MSKCC	GRCh37	X	66942741	66942741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	89	269	0	ENST00000374690.3:c.2522G>T	p.Arg841Leu	p.R841L	ENST00000374690	NM_000044.3	841	cGt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0040519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	483	182	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133574	55133574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	174	165	0	ENST00000257290.5:c.878G>A	p.Arg293His	p.R293H	ENST00000257290	NM_006206.4	293	cGc/cAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0040552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	71	240	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574035	7574035	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0040552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	78	359	0	ENST00000269305.4:c.994-2A>G		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40730882	40730882	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	99	447	0	ENST00000373198.4:c.3653T>C	p.Leu1218Pro	p.L1218P	ENST00000373198	NM_133170.3	1218	cTg/cCg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741608	17741608	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	23	219	0	ENST00000250003.3:c.279C>A	p.Cys93Ter	p.C93*	ENST00000250003	NM_002478.4	93	tgC/tgA																																																																															
CIC	23152	MSKCC	GRCh37	19	42795172	42795172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	78	624	0	ENST00000575354.2:c.2252G>T	p.Gly751Val	p.G751V	ENST00000575354	NM_015125.3	751	gGc/gTc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912898	50912898	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	75	529	0	ENST00000440232.2:c.2129A>T	p.Lys710Met	p.K710M	ENST00000440232	NM_002691.3	710	aAg/aTg																																																																															
ATR	545	MSKCC	GRCh37	3	142272795	142272795	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	35	244	0	ENST00000350721.4:c.2404G>T	p.Val802Leu	p.V802L	ENST00000350721	NM_001184.3	802	Gta/Tta																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31422988	31422988	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	54	366	0	ENST00000344624.3:c.3325G>T	p.Glu1109Ter	p.E1109*	ENST00000344624		1109	Gag/Tag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987236	2987236	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	37	363	0	ENST00000396946.4:c.193A>G	p.Met65Val	p.M65V	ENST00000396946	NM_032415.4	65	Atg/Gtg																																																																															
HGF	3082	MSKCC	GRCh37	7	81335062	81335062	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	80	224	0	ENST00000222390.5:c.1765G>C	p.Val589Leu	p.V589L	ENST00000222390	NM_000601.4	589	Gtc/Ctc																																																																															
SMO	6608	MSKCC	GRCh37	7	128852090	128852090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	123	536	0	ENST00000249373.3:c.2162C>T	p.Ala721Val	p.A721V	ENST00000249373	NM_005631.4	721	gCt/gTt																																																																															
RAD21	5885	MSKCC	GRCh37	8	117868980	117868980	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	36	234	0	ENST00000297338.2:c.719G>T	p.Gly240Val	p.G240V	ENST00000297338	NM_006265.2	240	gGt/gTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045137	47045137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	61	481	0	ENST00000329236.7:c.2144G>A	p.Arg715Gln	p.R715Q	ENST00000329236	NM_001204466.1	715	cGa/cAa																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650592	48650592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	40	541	1	ENST00000376670.3:c.562C>A	p.Pro188Thr	p.P188T	ENST00000376670	NM_002049.3	188	Ccc/Acc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696599	47696599	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	102	316	0	ENST00000347630.2:c.349A>G	p.Met117Val	p.M117V	ENST00000347630	NM_001007230.1	117	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0040327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	338	788	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922694	44922694	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	57	340	0	ENST00000377967.4:c.1555C>T	p.Arg519Ter	p.R519*	ENST00000377967	NM_021140.2	519	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487610	56487610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	106	633	0	ENST00000267101.3:c.1543G>T	p.Gly515Cys	p.G515C	ENST00000267101	NM_001982.3	515	Ggt/Tgt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046563	30046563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	530	561	1	ENST00000331968.5:c.2620G>T	p.Gly874Cys	p.G874C	ENST00000331968	NM_002742.2	874	Ggc/Tgc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005534	150005534	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	58	315	0	ENST00000253339.5:c.691G>T	p.Gly231Ter	p.G231*	ENST00000253339		231	Gga/Tga																																																																															
RHOA	387	MSKCC	GRCh37	3	49412905	49412905	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519951		P-0040334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	344	699	0	ENST00000418115.1:c.118G>C	p.Glu40Gln	p.E40Q	ENST00000418115	NM_001664.2	40	Gag/Cag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692830	89692830	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782343		P-0040334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	78	156	1	ENST00000371953.3:c.314G>A	p.Cys105Tyr	p.C105Y	ENST00000371953	NM_000314.4	105	tGt/tAt																																																																															
RB1	5925	MSKCC	GRCh37	13	48923118	48923127	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTGCTAAA	TGGTGCTAAA	-			P-0040334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	38	202	0	ENST00000267163.4:c.566_575del	p.Leu189Ter	p.L189*	ENST00000267163	NM_000321.2	189	tTGGTGCTAAAa/ta																																																																															
AKT1	207	MSKCC	GRCh37	14	105242114	105242142	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGATGGCGGTTGTCCACTCCTCCCTGCAG	GGATGGCGGTTGTCCACTCCTCCCTGCAG	-			P-0040334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	193	704	0	ENST00000349310.3:c.288-6_310del		p.X96_splice	ENST00000349310	NM_001014432.1	96																																																																																
TP53	7157	MSKCC	GRCh37	17	7577508	7577514	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAGTG	TCCAGTG	-			P-0040334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	202	706	0	ENST00000269305.4:c.767_773del	p.Thr256LysfsTer87	p.T256Kfs*87	ENST00000269305	NM_001126112.2	256	aCACTGGAa/aa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881440	37881440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	199	647	0	ENST00000269571.5:c.2632C>T	p.His878Tyr	p.H878Y	ENST00000269571		878	Cat/Tat																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	145	448	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881392	37881392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	222	793	0	ENST00000269571.5:c.2584A>G	p.Thr862Ala	p.T862A	ENST00000269571		862	Aca/Gca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	57	281	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0040345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	54	301	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112176018	112176018	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	38	194	0	ENST00000257430.4:c.4728del	p.Glu1577AsnfsTer73	p.E1577Nfs*73	ENST00000257430	NM_000038.5	1576	gAa/ga																																																																															
EP300	2033	MSKCC	GRCh37	22	41523494	41523494	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	65	241	1	ENST00000263253.7:c.910C>T	p.Gln304Ter	p.Q304*	ENST00000263253	NM_001429.3	304	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112173679	112173679	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0040345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	42	247	0	ENST00000257430.4:c.2388T>G	p.Tyr796Ter	p.Y796*	ENST00000257430	NM_000038.5	796	taT/taG																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	60	387	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591122	67591130	+	inframe_deletion	In_Frame_Del	DEL	AGCTGAGAA	AGCTGAGAA	-			P-0040458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	24	292	0	ENST00000274335.5:c.1717_1725delCTGAGAAAG	p.Leu573_Lys575del	p.L573_K575del	ENST00000274335		572	cAGCTGAGAAag/cag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32950930	32950930	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0040458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	35	375	0	ENST00000380152.3:c.8754+2T>G		p.X2918_splice	ENST00000380152		2918																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0040460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	14	333	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0040460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	17	246	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0040460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	307	349	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912580		P-0040460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	97	312	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885593	111885593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	197	727	1	ENST00000341259.2:c.1370G>A	p.Arg457Gln	p.R457Q	ENST00000341259	NM_005475.2	457	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579469	7579470	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGCGG			P-0040460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	151	667	0	ENST00000269305.4:c.217_218insCCGCG	p.Val73AlafsTer52	p.V73Afs*52	ENST00000269305	NM_001126112.2	73	gtg/gCCGCGtg																																																																															
NF1	4763	MSKCC	GRCh37	17	29663810	29663810	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	46	485	0	ENST00000358273.4:c.6305A>T	p.Tyr2102Phe	p.Y2102F	ENST00000358273	NM_001042492.2	2102	tAc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	240	324	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098815	178098815	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	570	607	4	ENST00000397062.3:c.230A>G	p.Asp77Gly	p.D77G	ENST00000397062	NM_006164.4	77	gAt/gGt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55153709	55153709	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0040483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	257	432	0	ENST00000257290.5:c.2674+1G>T		p.X892_splice	ENST00000257290	NM_006206.4	892																																																																																
SPRED1	161742	MSKCC	GRCh37	15	38631947	38631947	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	146	405	1	ENST00000299084.4:c.433G>T	p.Glu145Ter	p.E145*	ENST00000299084	NM_152594.2	145	Gag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29526904	29527465	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGCACTTTGGGAGGCTGAGGCAGAAGGATCACTTGAGCCCAGGGGTTCAAGACCAGCTTGGCCAACATGGTGAAATCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGCAGGCGCCTGTAAACCCAGCTACTCTGGAGGCTGAGGCGGGAGAATCGCTTGACCCTGGGAGGCAGAGGTTGCAATGAGCCAAGATCGTGCCTTTGTACTCCAGCCTGGGCAACAGAGGAAGACACCATCTTGGGAAAAAAAAAAAAAAGAAGTTCAGAAAACAGCTTGTTTGGGAAGGACTGTTTTTTGTATTCCTTTAATAATTCAATAAAGAAAATAGAAAAAGGATTTTTTTTAAATTTGAGAAACATTTAAATGATGACCACTACTTAAATTATGAAATTGAAAACCACAAATATAAATTATGCATTCTTTATAGTATGAGTTTTAGAGGCTGTTAATTTGCTATAATATTAGCTACATCTGGAATAGAAGAAACTTCATATATTATCTTATCGCTATATTTGAATTCTGTAGAAGTTATTTCTGGACAGTCTACGAAA	AGCACTTTGGGAGGCTGAGGCAGAAGGATCACTTGAGCCCAGGGGTTCAAGACCAGCTTGGCCAACATGGTGAAATCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGCAGGCGCCTGTAAACCCAGCTACTCTGGAGGCTGAGGCGGGAGAATCGCTTGACCCTGGGAGGCAGAGGTTGCAATGAGCCAAGATCGTGCCTTTGTACTCCAGCCTGGGCAACAGAGGAAGACACCATCTTGGGAAAAAAAAAAAAAAGAAGTTCAGAAAACAGCTTGTTTGGGAAGGACTGTTTTTTGTATTCCTTTAATAATTCAATAAAGAAAATAGAAAAAGGATTTTTTTTAAATTTGAGAAACATTTAAATGATGACCACTACTTAAATTATGAAATTGAAAACCACAAATATAAATTATGCATTCTTTATAGTATGAGTTTTAGAGGCTGTTAATTTGCTATAATATTAGCTACATCTGGAATAGAAGAAACTTCATATATTATCTTATCGCTATATTTGAATTCTGTAGAAGTTATTTCTGGACAGTCTACGAAA	-			P-0040483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1	209	0	0	ENST00000358273.4:c.889-533_917del		p.X297_splice	ENST00000358273	NM_001042492.2	297																																																																																
STK11	6794	MSKCC	GRCh37	19	1220656	1220656	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	527	828	2	ENST00000326873.7:c.675del	p.Asn226ThrfsTer61	p.N226Tfs*61	ENST00000326873	NM_000455.4	225	gCc/gc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217224	66217226	+	missense_variant	Missense_Mutation	ONP	CAC	CAC	ACA			P-0040483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	97	359	0	ENST00000273854.3:c.2389_2391delinsTGT	p.Val797Cys	p.V797C	ENST00000273854	NM_004439.5	797	GTG/TGT																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671313	30671313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0040483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	125	419	0	ENST00000376406.3:c.5564A>G	p.Asp1855Gly	p.D1855G	ENST00000376406	NM_014641.2	1855	gAt/gGt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170145	32170145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	281	830	2	ENST00000375023.3:c.3463C>A	p.Pro1155Thr	p.P1155T	ENST00000375023	NM_004557.3	1155	Cca/Aca																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738425	145738425	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	470	708	1	ENST00000428558.2:c.2560A>G	p.Thr854Ala	p.T854A	ENST00000428558	NM_004260.3	854	Acc/Gcc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0028711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	327	991	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577049	7577049	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	292	1140	0	ENST00000269305.4:c.889delC	p.His297ThrfsTer48	p.H297Tfs*48	ENST00000269305	NM_001126112.2	297	Cac/ac																																																																															
IRF4	3662	MSKCC	GRCh37	6	401642	401642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	79	848	0	ENST00000380956.4:c.964G>A	p.Asp322Asn	p.D322N	ENST00000380956	NM_001195286.1	322	Gac/Aac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151893043	151893043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	45	732	0	ENST00000262189.6:c.4327G>A	p.Asp1443Asn	p.D1443N	ENST00000262189	NM_170606.2	1443	Gac/Aac																																																																															
SESN3	143686	MSKCC	GRCh37	11	94924617	94924617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1236	86	1159	4	ENST00000536441.1:c.293G>A	p.Arg98His	p.R98H	ENST00000536441	NM_144665.3	98	cGc/cAc																																																																															
ALK	238	MSKCC	GRCh37	2	29432688	29432688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	91	940	0	ENST00000389048.3:c.3800A>G	p.Lys1267Arg	p.K1267R	ENST00000389048	NM_004304.4	1267	aAg/aGg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198262804	198262804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	70	683	0	ENST00000335508.6:c.3171G>T	p.Arg1057Ser	p.R1057S	ENST00000335508	NM_012433.2	1057	agG/agT																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72881634	72881634	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0028711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	39	664	0	ENST00000325599.8:c.487-2A>G		p.X163_splice	ENST00000325599	NM_018130.2	163																																																																																
ROS1	6098	MSKCC	GRCh37	6	117715831	117715839	+	inframe_deletion	In_Frame_Del	DEL	TAAATGTTT	TAAATGTTT	-			P-0028711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	58	778	0	ENST00000368508.3:c.919_927del	p.Lys307_Leu309del	p.K307_L309del	ENST00000368508	NM_002944.2	307	AAACATTTA/-																																																																															
MET	4233	MSKCC	GRCh37	7	116415160	116415160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	75	825	2	ENST00000397752.3:c.3254G>A	p.Gly1085Glu	p.G1085E	ENST00000397752	NM_000245.2	1085	gGa/gAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140477858	140477858	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	177	844	0	ENST00000288602.6:c.1450A>G	p.Met484Val	p.M484V	ENST00000288602	NM_004333.4	484	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0038472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	225	626	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916929	178916937	+	inframe_deletion	In_Frame_Del	DEL	GGCAACCGT	GGCAACCGT	-			P-0038472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	94	372	0	ENST00000263967.3:c.317_325delGCAACCGTG	p.Gly106_Arg108del	p.G106_R108del	ENST00000263967	NM_006218.2	106	GGCAACCGT/-																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046305	128046305	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	52	515	0	ENST00000285398.2:c.958C>G	p.Gln320Glu	p.Q320E	ENST00000285398	NM_000122.1	320	Cag/Gag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487214	56487214	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	175	614	0	ENST00000267101.3:c.1360A>G	p.Ile454Val	p.I454V	ENST00000267101	NM_001982.3	454	Atc/Gtc																																																																															
RB1	5925	MSKCC	GRCh37	13	49037934	49037935	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	15	301	0	ENST00000267163.4:c.2176dup	p.Thr726AsnfsTer25	p.T726Nfs*25	ENST00000267163	NM_000321.2	725	gta/gtAa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021133	31021133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	90	542	0	ENST00000375687.4:c.1132G>A	p.Glu378Lys	p.E378K	ENST00000375687	NM_015338.5	378	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0040131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	105	499	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0040131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	178	445	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
REL	5966	MSKCC	GRCh37	2	61149071	61149071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	76	449	0	ENST00000295025.8:c.1261C>T	p.Arg421Cys	p.R421C	ENST00000295025	NM_002908.2	421	Cgc/Tgc																																																																															
POLE	5426	MSKCC	GRCh37	12	133248877	133248878	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTGCAGCAGGAAGTCAAAG			P-0040131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	116	657	0	ENST00000320574.5:c.1698_1717dup	p.Arg573ProfsTer45	p.R573Pfs*45	ENST00000320574	NM_006231.2	573	cgg/cCTTTGACTTCCTGCTGCAGCgg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78935210	78935210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	69	637	0	ENST00000306801.3:c.3622C>T	p.Arg1208Trp	p.R1208W	ENST00000306801	NM_020761.2	1208	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0040132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	234	332	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112175755	112175755	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	81	301	0	ENST00000257430.4:c.4464del	p.Leu1488PhefsTer19	p.L1488Ffs*19	ENST00000257430	NM_000038.5	1488	ttA/tt																																																																															
ATM	472	MSKCC	GRCh37	11	108121649	108121649	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	247	440	2	ENST00000278616.4:c.1457A>C	p.Lys486Thr	p.K486T	ENST00000278616	NM_000051.3	486	aAa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578158	7578389	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCCAGTTGCAAACCAGACCTCAGGCGGCTCATAGGGCACCACCACACTATGTCGAAAAGTGTTTCTGTCATCCAAATACTCCACACGCAAATTTCCTTCCACTCGGATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCG	CCCCAGTTGCAAACCAGACCTCAGGCGGCTCATAGGGCACCACCACACTATGTCGAAAAGTGTTTCTGTCATCCAAATACTCCACACGCAAATTTCCTTCCACTCGGATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCG	-			P-0040132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	329	598	0	ENST00000269305.4:c.541_672+19del		p.X181_splice	ENST00000269305	NM_001126112.2	181																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153247265	153247265	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	308	321	0	ENST00000281708.4:c.1537A>T	p.Arg513Trp	p.R513W	ENST00000281708	NM_033632.3	513	Agg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112174013	112174014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTACCACTGAATTACATTGTGTGACAGATGAGAGAAATGCACTTAGAAGAAGCTCTGCTGCC			P-0040132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	61	336	0	ENST00000257430.4:c.2724_2785dup	p.His929LeufsTer8	p.H929Lfs*8	ENST00000257430	NM_000038.5	908	tct/tCTACCACTGAATTACATTGTGTGACAGATGAGAGAAATGCACTTAGAAGAAGCTCTGCTGCCct																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93964435	93964435	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	98	475	1	ENST00000369303.4:c.2462G>T	p.Ser821Ile	p.S821I	ENST00000369303	NM_004440.3	821	aGc/aTc																																																																															
TEK	7010	MSKCC	GRCh37	9	27192621	27192621	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0040132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	233	377	0	ENST00000380036.4:c.1624G>A	p.Gly542Arg	p.G542R	ENST00000380036	NM_000459.3	542	Gga/Aga																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843572	156843572	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	179	802	1	ENST00000524377.1:c.998T>A	p.Leu333Gln	p.L333Q	ENST00000524377	NM_002529.3	333	cTg/cAg																																																																															
MET	4233	MSKCC	GRCh37	7	116412008	116412023	+	protein_altering_variant	In_Frame_Del	DEL	ATGAATCTGTAGACTA	ATGAATCTGTAGACTA	G			P-0040161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	93	659	0	ENST00000397752.3:c.2993_3008delinsG	p.Asn998_Tyr1003delinsSer	p.N998_Y1003delinsS	ENST00000397752	NM_000245.2	998	aATGAATCTGTAGACTAc/aGc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0040225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	49	555	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0040225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	36	638	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061223	38061228	+	inframe_deletion	In_Frame_Del	DEL	TCTCGA	TCTCGA	-			P-0040293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	89	620	1	ENST00000250448.2:c.761_766del	p.Phe254_Asn256delinsTyr	p.F254_N256delinsY	ENST00000250448	NM_004496.3	254	tTCGAGAac/tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	51	394	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0040302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	62	705	1	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
FANCC	2176	MSKCC	GRCh37	9	97934360	97934360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	50	396	0	ENST00000289081.3:c.415G>A	p.Gly139Arg	p.G139R	ENST00000289081	NM_000136.2	139	Ggg/Agg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001207-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			262	436	387	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001207-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			430	214	635	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549724	187549724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001207-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			393	209	597	0	ENST00000441802.2:c.4517G>A	p.Arg1506His	p.R1506H	ENST00000441802	NM_005245.3	1506	cGt/cAt																																																																															
RARA	5914	MSKCC	GRCh37	17	38510610	38510610	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001207-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			931	290	621	0	ENST00000254066.5:c.864C>A	p.Asp288Glu	p.D288E	ENST00000254066	NM_000964.3	288	gaC/gaA																																																																															
AGO2	27161	MSKCC	GRCh37	8	141557668	141557668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001207-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			2199	480	839	0	ENST00000220592.5:c.1647G>A	p.Met549Ile	p.M549I	ENST00000220592	NM_012154.3	549	atG/atA																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341696	8341696	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001207-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			211	246	634	0	ENST00000356435.5:c.4944T>A	p.Phe1648Leu	p.F1648L	ENST00000356435		1648	ttT/ttA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004445-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			532	131	624	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187838	11187838	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004445-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			476	105	500	0	ENST00000361445.4:c.6059C>G	p.Ala2020Gly	p.A2020G	ENST00000361445	NM_004958.3	2020	gCc/gGc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56477631	56477631	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004445-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			521	156	604	0	ENST00000267101.3:c.179T>A	p.Met60Lys	p.M60K	ENST00000267101	NM_001982.3	60	aTg/aAg																																																																															
EP300	2033	MSKCC	GRCh37	22	41542803	41542803	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004445-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			549	39	415	0	ENST00000263253.7:c.2114G>C	p.Arg705Pro	p.R705P	ENST00000263253	NM_001429.3	705	cGa/cCa																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27840044	27840044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004445-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			338	71	369	0	ENST00000328488.2:c.50C>T	p.Pro17Leu	p.P17L	ENST00000328488	NM_003533.2	17	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	169	208	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0005200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	13	100	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0005200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	29	137	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0005200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	233	191	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138478043	138478043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	173	237	0	ENST00000289153.2:c.143G>A	p.Arg48Gln	p.R48Q	ENST00000289153	NM_006219.2	48	cGg/cAg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423646	88423646	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	27	144	0	ENST00000360948.2:c.2189C>G	p.Thr730Ser	p.T730S	ENST00000360948	NM_001012338.2	730	aCc/aGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604706	48604706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	142	210	0	ENST00000342988.3:c.1528G>A	p.Gly510Arg	p.G510R	ENST00000342988	NM_005359.5	510	Gga/Aga																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645922	67645922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	417	486	0	ENST00000264010.4:c.850C>T	p.His284Tyr	p.H284Y	ENST00000264010	NM_006565.3	284	Cac/Tac																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100436	8100436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	608	460	0	ENST00000346208.3:c.410C>T	p.Ser137Leu	p.S137L	ENST00000346208		137	tCg/tTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041713	47041713	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1593	236	589	0	ENST00000329236.7:c.1704G>C	p.Lys568Asn	p.K568N	ENST00000329236	NM_001204466.1	568	aaG/aaC																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653863	89653865	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TAA	TAA	-			P-0006558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1735	337	308	0	ENST00000371953.3:c.161_163del	p.Val54_Arg55delinsGly	p.V54_R55delinsG	ENST00000371953	NM_000314.4	54	gTAAgg/ggg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0006603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			17	302	438	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0006658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	46	542	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	188	355	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	276	405	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0006659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	176	391	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1311	297	567	3	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157488227	157488227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	267	438	0	ENST00000346085.5:c.2933C>A	p.Pro978His	p.P978H	ENST00000346085	NM_020732.3	978	cCc/cAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920392	114920392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1264	303	495	0	ENST00000543371.1:c.1333A>G	p.Lys445Glu	p.K445E	ENST00000543371	NM_001198531.1	445	Aag/Gag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912463	32912463	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1697	295	650	0	ENST00000380152.3:c.3971A>C	p.Tyr1324Ser	p.Y1324S	ENST00000380152		1324	tAt/tCt																																																																															
MGA	23269	MSKCC	GRCh37	15	42003095	42003095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	459	624	0	ENST00000219905.7:c.2632A>G	p.Ile878Val	p.I878V	ENST00000219905	NM_001164273.1	878	Att/Gtt																																																																															
APC	324	MSKCC	GRCh37	5	112175745	112175753	+	frameshift_variant	Frame_Shift_Del	DEL	CTGATACTT	CTGATACTT	A			P-0006659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	157	365	0	ENST00000257430.4:c.4454_4462delinsA	p.Ala1485AspfsTer26	p.A1485Dfs*26	ENST00000257430	NM_000038.5	1485	gCTGATACTTta/gAta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	160	174	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1222006	1222006	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0006878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	190	216	0	ENST00000326873.7:c.920+1G>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602488	10602488	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	179	203	0	ENST00000171111.5:c.1090G>T	p.Gly364Cys	p.G364C	ENST00000171111	NM_203500.1	364	Ggc/Tgc																																																																															
ATR	545	MSKCC	GRCh37	3	142257340	142257340	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	41	216	1	ENST00000350721.4:c.3709C>A	p.Leu1237Ile	p.L1237I	ENST00000350721	NM_001184.3	1237	Ctc/Atc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968187	15968187	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	104	253	0	ENST00000268712.3:c.5098C>G	p.Pro1700Ala	p.P1700A	ENST00000268712	NM_006311.3	1700	Cca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0026942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			300	357	377	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0026942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			561	244	295	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14628978	14628978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			620	95	299	0	ENST00000254322.2:c.184G>A	p.Glu62Lys	p.E62K	ENST00000254322	NM_006145.1	62	Gag/Aag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10246861	10246861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			656	128	417	0	ENST00000340748.4:c.4544G>A	p.Gly1515Glu	p.G1515E	ENST00000340748		1515	gGa/gAa																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858005	152858005	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			188	46	87	0	ENST00000406277.2:c.610G>C	p.Glu204Gln	p.E204Q	ENST00000406277	NM_152274.4	204	Gag/Cag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330590	65330590	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			574	101	287	0	ENST00000342505.4:c.1056G>C	p.Lys352Asn	p.K352N	ENST00000342505	NM_002227.2	352	aaG/aaC																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953210	81953210	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			409	73	217	0	ENST00000359376.3:c.2176T>A	p.Tyr726Asn	p.Y726N	ENST00000359376	NM_002661.3	726	Tac/Aac																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10246804	10246804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			632	121	378	0	ENST00000340748.4:c.4601G>A	p.Gly1534Asp	p.G1534D	ENST00000340748		1534	gGc/gAc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62319060	62319060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1280	118	443	1	ENST00000508582.2:c.1490G>A	p.Arg497His	p.R497H	ENST00000508582		497	cGc/cAc																																																																															
SDHA	6389	MSKCC	GRCh37	5	251205	251205	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	54	192	0	ENST00000264932.6:c.1650G>C	p.Lys550Asn	p.K550N	ENST00000264932	NM_004168.2	550	aaG/aaC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945111	151945111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			323	26	184	0	ENST00000262189.6:c.2408C>A	p.Ala803Asp	p.A803D	ENST00000262189	NM_170606.2	803	gCt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0030482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	138	249	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788618	3788618	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs398124146		P-0030482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	35	283	0	ENST00000262367.5:c.4336C>T	p.Arg1446Cys	p.R1446C	ENST00000262367	NM_004380.2	1446	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579310	7579310	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0030482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	95	325	0	ENST00000269305.4:c.375+2T>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
HOXB13	10481	MSKCC	GRCh37	17	46805371	46805371	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	2989	617	0	ENST00000290295.7:c.585G>C	p.Trp195Cys	p.W195C	ENST00000290295	NM_006361.5	195	tgG/tgC																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805399	46805400	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TA			P-0030482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	2968	658	2	ENST00000290295.7:c.556_557delinsTA	p.Gly186Ter	p.G186*	ENST00000290295	NM_006361.5	186	GGa/TAa																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805601	46805601	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	3417	572	0	ENST00000290295.7:c.355G>C	p.Glu119Gln	p.E119Q	ENST00000290295	NM_006361.5	119	Gag/Cag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688772	47688772	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	873	267	0	ENST00000347630.2:c.528G>C	p.Met176Ile	p.M176I	ENST00000347630	NM_001007230.1	176	atG/atC																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500339	99500339	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	203	616	0	ENST00000268035.6:c.3772T>G	p.Ser1258Ala	p.S1258A	ENST00000268035	NM_000875.3	1258	Tcc/Gcc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0031927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	218	558	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0031927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	159	396	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	222	630	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350248	15350248	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	89	855	0	ENST00000263377.2:c.3531G>T	p.Lys1177Asn	p.K1177N	ENST00000263377	NM_058243.2	1177	aaG/aaT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11094925	11094925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	31	844	1	ENST00000344626.4:c.98G>T	p.Gly33Val	p.G33V	ENST00000344626	NM_003072.3	33	gGt/gTt																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158474	26158475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	214	730	0	ENST00000289316.2:c.78dup	p.Gly27ArgfsTer117	p.G27Rfs*117	ENST00000289316	NM_138720.2	26	gac/gaCc																																																																															
NBN	4683	MSKCC	GRCh37	8	90983463	90983463	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	209	406	0	ENST00000265433.3:c.640G>T	p.Gly214Ter	p.G214*	ENST00000265433	NM_002485.4	214	Gga/Tga																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87549130	87549130	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	169	588	0	ENST00000277120.3:c.1687G>T	p.Gly563Ter	p.G563*	ENST00000277120		563	Gga/Tga																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127920662	127920662	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0032008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	136	366	1	ENST00000373547.4:c.238-1G>A		p.X80_splice	ENST00000373547	NM_002721.4	80																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0032053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	61	452	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578247	7578247	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0032053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	59	475	1	ENST00000269305.4:c.602T>A	p.Leu201Ter	p.L201*	ENST00000269305	NM_001126112.2	201	tTg/tAg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136926	64136932	+	frameshift_variant	Frame_Shift_Del	DEL	GTACCTG	GTACCTG	-			P-0032053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	38	352	0	ENST00000334205.4:c.1439_1445del	p.Tyr480SerfsTer36	p.Y480Sfs*36	ENST00000334205	NM_003942.2	479	acGTACCTG/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579550	7579550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	59	563	0	ENST00000269305.4:c.137C>A	p.Ser46Tyr	p.S46Y	ENST00000269305	NM_001126112.2	46	tCc/tAc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031196	11031196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	34	565	0	ENST00000327064.4:c.1281C>A	p.Phe427Leu	p.F427L	ENST00000327064	NM_199141.1	427	ttC/ttA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0032055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	33	480	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
AKT1	207	MSKCC	GRCh37	14	105239419	105239419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	110	467	0	ENST00000349310.3:c.968A>G	p.Asp323Gly	p.D323G	ENST00000349310	NM_001014432.1	323	gAc/gGc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871798	12871798	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	38	130	0	ENST00000228872.4:c.518delA	p.Asn173MetfsTer52	p.N173Mfs*52	ENST00000228872	NM_004064.3	172	gAa/ga																																																																															
KDR	3791	MSKCC	GRCh37	4	55962511	55962511	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0032068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	19	309	0	ENST00000263923.4:c.2615-2A>G		p.X872_splice	ENST00000263923	NM_002253.2	872																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44923063	44923063	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0032068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	17	188	0	ENST00000377967.4:c.1923+1G>A		p.X641_splice	ENST00000377967	NM_021140.2	641																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	8	397	0	ENST00000263967.3:c.3132T>A	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaA																																																																															
CDH1	999	MSKCC	GRCh37	16	68845613	68845619	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGACG	ACAGACG	-			P-0032139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	123	477	0	ENST00000261769.5:c.859_865del	p.Thr287ArgfsTer5	p.T287Rfs*5	ENST00000261769	NM_004360.3	287	ACAGACGcg/cg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629848	187629848	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	61	704	0	ENST00000441802.2:c.1134A>C	p.Glu378Asp	p.E378D	ENST00000441802	NM_005245.3	378	gaA/gaC																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0032154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	30	231	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0032154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	27	277	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11300570	11300570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	53	655	0	ENST00000361445.4:c.1576C>T	p.Arg526Cys	p.R526C	ENST00000361445	NM_004958.3	526	Cgt/Tgt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120713	115120731	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTCTTCGGGCTCCATGG	TCTTCTTCGGGCTCCATGG	-			P-0032154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	38	636	0	ENST00000257566.3:c.275_293del	p.Thr92ArgfsTer41	p.T92Rfs*41	ENST00000257566	NM_016569.3	92	aCCATGGAGCCCGAAGAAGAg/ag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061249	38061249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	111	526	0	ENST00000250448.2:c.740A>G	p.His247Arg	p.H247R	ENST00000250448	NM_004496.3	247	cAc/cGc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095620	178095620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	105	487	0	ENST00000397062.3:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000397062	NM_006164.4	571	Gaa/Aaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420637	49420637	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	115	522	0	ENST00000301067.7:c.15112G>T	p.Glu5038Ter	p.E5038*	ENST00000301067	NM_003482.3	5038	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7576250	7577272	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AACCTCATCTCTACTAAAAAAAAAAATAAATAAATAACAAAAAATTAGCTGGGCGTCGGGGCAGGTGCCTGTAATCCCAGCTACTCAGTGGGCTGAGGCAGGAGAATCGCTTGAACCCAGAAGGCGGAGGTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTCCAAAAAAAAAAAAAAAAAAAGCAGGCTAGGCTAAGCTATGATGTTCCTTAGATTAGGTGTATTAAATCCATTTTCAACTTACAATATTTTCAACTTACGACGAGTTTATCAGGAAGTAACACCATCGTAAGTCAAGTAGCATCTGTATCAGGCAAAGTCATAGAACCATTTTCATGCTCTCTTTAACAATTTTCTTTTTGAAAGCTGGTCTGGTCCTTTAAAATATATATTATGGTATAAGTTGGTGTTCTGAAGTTAGTTAGCTACAACCAGGAGCCATTGTCTTTGAGGCATCACTGCCCCCTGATGGCAAATGCCCCAATTGCAGGTAAAACAGTCAAGAAGAAAACGGCATTTTGAGTGTTAGACTGGAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCCTTGGTCTCCTCCACCGCTTCTTGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGGGCAGCTCGTGGTGAGGCTCCCCTTTCTTGCGGAGATTCTCTTCCTCTGTGCGCCGGTCTCTCCCAGGACAGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCACTACTCAGGATAGGAAAAGAGAAGCAAGAGGCAGTAAGGAAATCAGGTCCTACCTGTCCCATTTAAAAAACCAGGCTCCATCTACTCCCAACCACCCTTGTCCTTTCTGGAGCCTAA	AACCTCATCTCTACTAAAAAAAAAAATAAATAAATAACAAAAAATTAGCTGGGCGTCGGGGCAGGTGCCTGTAATCCCAGCTACTCAGTGGGCTGAGGCAGGAGAATCGCTTGAACCCAGAAGGCGGAGGTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTCCAAAAAAAAAAAAAAAAAAAGCAGGCTAGGCTAAGCTATGATGTTCCTTAGATTAGGTGTATTAAATCCATTTTCAACTTACAATATTTTCAACTTACGACGAGTTTATCAGGAAGTAACACCATCGTAAGTCAAGTAGCATCTGTATCAGGCAAAGTCATAGAACCATTTTCATGCTCTCTTTAACAATTTTCTTTTTGAAAGCTGGTCTGGTCCTTTAAAATATATATTATGGTATAAGTTGGTGTTCTGAAGTTAGTTAGCTACAACCAGGAGCCATTGTCTTTGAGGCATCACTGCCCCCTGATGGCAAATGCCCCAATTGCAGGTAAAACAGTCAAGAAGAAAACGGCATTTTGAGTGTTAGACTGGAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCCTTGGTCTCCTCCACCGCTTCTTGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGGGCAGCTCGTGGTGAGGCTCCCCTTTCTTGCGGAGATTCTCTTCCTCTGTGCGCCGGTCTCTCCCAGGACAGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCACTACTCAGGATAGGAAAAGAGAAGCAAGAGGCAGTAAGGAAATCAGGTCCTACCTGTCCCATTTAAAAAACCAGGCTCCATCTACTCCCAACCACCCTTGTCCTTTCTGGAGCCTAA	-			P-0032187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7	33	6	0	ENST00000269305.4:c.783-116_993+604del		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
PIK3R2	5296	MSKCC	GRCh37	19	18278061	18278061	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	128	577	0	ENST00000222254.8:c.1681A>T	p.Asn561Tyr	p.N561Y	ENST00000222254	NM_005027.3	561	Aac/Tac																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277990	41278077	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTAAGTAAAAAGGAACCAAAGCCTTTAGCAGATGTGTACATTGAAGTCTCAGTTTTTCCTCAAGGGCCTTTTTCTCCTTGTCTCTTA	GGTAAGTAAAAAGGAACCAAAGCCTTTAGCAGATGTGTACATTGAAGTCTCAGTTTTTCCTCAAGGGCCTTTTTCTCCTTGTCTCTTA	-			P-0032187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	61	373	0	ENST00000349496.5:c.1954+1_1955-1del		p.X652_splice	ENST00000349496	NM_001904.3	652																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41279567	41280589	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTATGTGTCTCATATTTCTCGATTAACTCCAGATCAAGCTAAAGTTCTAAAACTTTTATCAGAAGAGCCGGTTTGCTCATCTGGGAAACCAGTGTTGGCAGAAAAGTAGTGGCTTCAATTAAAAGCAGTTCTTAAATTCCAGTCAGCAACAGTATCTTTAATGGAGCACAGGGAATTCAGAGCCACACAATGAGTAGCAGTAGGATTACACCACCAACAAATACATGCTACTGCTAGGCCTCTGCAGTGCAGGATGTTACAATTTACCTGGCTTTTTATTCTCTTTTTGGCCAGAGGACTCATAATACCTTTGTCTACAAGCTACCCAAGGAAGATAGGAAAACTCCTGTTTCTAGGCTCAGATCTCGGGTGGGTTTTTACATAGTTGCATTATCATCAGGGTTTTCTTGAAAAGCTAATTTAAATCTGGGTAATGAACATGGAGGATGGCATAGACCACTAACAATTATAACTGTCTTACATTTATAACCGCATCTGCTTCTACCTAATTATGAAACCACTAAAGCGCAGATTCTTACTGTGAGAAATAACATGTCAACCCTAAGATAAAATATGTTGAGGTTTCATGGAAATAGTGCCTTTCCTTAGTACTTTTGTGGGTGTCACTTGGCCTTTTTGTCAAGATAGATTACACCTGCCAGACCTCATTATTGTCTTAATCCTCCTTCCCATGACTTCTCACTGCCTAGGTGGTCACACAGTAGATTCCTGCTTCTTCTCCTCGGGAACCCCAAGTCTCTTGACAGGGGTAAATGCAGAGTGTTCAGGGTTAGACTAATGATGTGACTAGGCCCTGCTGGTGTGCCTGTCTGATGGAAATAGATGTTATTTGTGTAGTCTCATGGGTGGCCTGGCACTGAGTAATTACTTGGCTAAAGAAAGCTGGAGGTTGAAGAGGCTAGAAAGCGTTGTTTTCTGACAAGTTTGCTGCTGAACTTTGGATGCCCTAACCTCAGTGTTAACGTCTATGTCTGCTTCTCTCCTCTCTCTTTTGCCTTCCT	GGTATGTGTCTCATATTTCTCGATTAACTCCAGATCAAGCTAAAGTTCTAAAACTTTTATCAGAAGAGCCGGTTTGCTCATCTGGGAAACCAGTGTTGGCAGAAAAGTAGTGGCTTCAATTAAAAGCAGTTCTTAAATTCCAGTCAGCAACAGTATCTTTAATGGAGCACAGGGAATTCAGAGCCACACAATGAGTAGCAGTAGGATTACACCACCAACAAATACATGCTACTGCTAGGCCTCTGCAGTGCAGGATGTTACAATTTACCTGGCTTTTTATTCTCTTTTTGGCCAGAGGACTCATAATACCTTTGTCTACAAGCTACCCAAGGAAGATAGGAAAACTCCTGTTTCTAGGCTCAGATCTCGGGTGGGTTTTTACATAGTTGCATTATCATCAGGGTTTTCTTGAAAAGCTAATTTAAATCTGGGTAATGAACATGGAGGATGGCATAGACCACTAACAATTATAACTGTCTTACATTTATAACCGCATCTGCTTCTACCTAATTATGAAACCACTAAAGCGCAGATTCTTACTGTGAGAAATAACATGTCAACCCTAAGATAAAATATGTTGAGGTTTCATGGAAATAGTGCCTTTCCTTAGTACTTTTGTGGGTGTCACTTGGCCTTTTTGTCAAGATAGATTACACCTGCCAGACCTCATTATTGTCTTAATCCTCCTTCCCATGACTTCTCACTGCCTAGGTGGTCACACAGTAGATTCCTGCTTCTTCTCCTCGGGAACCCCAAGTCTCTTGACAGGGGTAAATGCAGAGTGTTCAGGGTTAGACTAATGATGTGACTAGGCCCTGCTGGTGTGCCTGTCTGATGGAAATAGATGTTATTTGTGTAGTCTCATGGGTGGCCTGGCACTGAGTAATTACTTGGCTAAAGAAAGCTGGAGGTTGAAGAGGCTAGAAAGCGTTGTTTTCTGACAAGTTTGCTGCTGAACTTTGGATGCCCTAACCTCAGTGTTAACGTCTATGTCTGCTTCTCTCCTCTCTCTTTTGCCTTCCT	-			P-0032187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	56	440	0	ENST00000349496.5:c.2137_2138-36del		p.X713_splice	ENST00000349496	NM_001904.3	713																																																																																
FAT1	2195	MSKCC	GRCh37	4	187518086	187518086	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	109	538	0	ENST00000441802.2:c.12608G>T	p.Arg4203Leu	p.R4203L	ENST00000441802	NM_005245.3	4203	cGt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	51	399	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0032190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	32	547	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295222	1295222	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0032190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	41	218	0				ENST00000310581	NM_198253.2																																																																																	
AR	367	MSKCC	GRCh37	X	66765142	66765142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	49	139	0	ENST00000374690.3:c.154G>A	p.Ala52Thr	p.A52T	ENST00000374690	NM_000044.3	52	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0032191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	43	240	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0032191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	120	482	2	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735407	204735407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	80	309	0	ENST00000302823.3:c.208C>T	p.Arg70Trp	p.R70W	ENST00000302823	NM_005214.4	70	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	68	277	0	ENST00000342988.3:c.1255G>A	p.Gly419Arg	p.G419R	ENST00000342988	NM_005359.5	419	Ggg/Agg																																																																															
APC	324	MSKCC	GRCh37	5	112128175	112128175	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	32	295	0	ENST00000257430.4:c.679del	p.Asp227ThrfsTer66	p.D227Tfs*66	ENST00000257430	NM_000038.5	226	aaG/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	348	432	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0032195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	109	601	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0032195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	36	162	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604776	48604776	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	98	335	0	ENST00000342988.3:c.1598T>C	p.Leu533Pro	p.L533P	ENST00000342988	NM_005359.5	533	cTc/cCc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104893810		P-0032227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	22	329	1	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164508	47164508	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201756643		P-0032227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	31	420	0	ENST00000409792.3:c.1618C>T	p.Arg540Ter	p.R540*	ENST00000409792	NM_014159.6	540	Cga/Tga																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761468	59761468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	48	423	0	ENST00000259008.2:c.2939C>T	p.Ala980Val	p.A980V	ENST00000259008	NM_032043.2	980	gCa/gTa																																																																															
E2F3	1871	MSKCC	GRCh37	6	20490422	20490422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	20	430	0	ENST00000346618.3:c.1159C>T	p.His387Tyr	p.H387Y	ENST00000346618	NM_001949.4	387	Cat/Tat																																																																															
PGR	5241	MSKCC	GRCh37	11	100999161	100999161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	160	556	2	ENST00000325455.5:c.641C>T	p.Pro214Leu	p.P214L	ENST00000325455	NM_001202474.3	214	cCg/cTg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066901	30066901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	80	367	0	ENST00000331968.5:c.2230G>A	p.Val744Met	p.V744M	ENST00000331968	NM_002742.2	744	Gtg/Atg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061143	38061202	+	inframe_deletion	In_Frame_Del	DEL	GCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTG	GCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTG	-			P-0032250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	95	119	0	ENST00000250448.2:c.787_846del	p.Gln263_Ser282del	p.Q263_S282del	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGC/-																																																																															
PIM1	5292	MSKCC	GRCh37	6	37138997	37138997	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	178	624	0	ENST00000373509.5:c.337C>G	p.Pro113Ala	p.P113A	ENST00000373509	NM_002648.3	113	Ccc/Gcc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879525	151879526	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0032250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	124	328	0	ENST00000262189.6:c.5419_5420del	p.Gln1807GlufsTer20	p.Q1807Efs*20	ENST00000262189	NM_170606.2	1807	CAg/g																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061210	38061213	+	missense_variant	Missense_Mutation	ONP	AAGT	AAGT	GAGA			P-0032250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	105	391	0	ENST00000250448.2:c.776_779delinsTCTC	p.Tyr259_Leu260delinsPheSer	p.Y259_L260delinsFS	ENST00000250448	NM_004496.3	259	tACTTg/tTCTCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	95	360	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	261	656	0	ENST00000269305.4:c.451C>G	p.Pro151Ala	p.P151A	ENST00000269305	NM_001126112.2	151	Ccc/Gcc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696642	47696642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	115	553	0	ENST00000347630.2:c.306C>G	p.Phe102Leu	p.F102L	ENST00000347630	NM_001007230.1	102	ttC/ttG																																																																															
CDC73	79577	MSKCC	GRCh37	1	193094324	193094324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	129	476	0	ENST00000367435.3:c.214C>A	p.Pro72Thr	p.P72T	ENST00000367435	NM_024529.4	72	Cct/Act																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246117	46246117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	67	373	0	ENST00000334344.6:c.4211A>C	p.Gln1404Pro	p.Q1404P	ENST00000334344	NM_152641.2	1404	cAa/cCa																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495646	72495646	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0032314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	62	289	0	ENST00000477973.2:c.423+1G>C		p.X141_splice	ENST00000477973	NM_012234.5	141																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0032358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	4663	362	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0032358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	305	717	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112090657	112090657	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs145945630		P-0032358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	60	277	0	ENST00000257430.4:c.70C>T	p.Arg24Ter	p.R24*	ENST00000257430	NM_000038.5	24	Cga/Tga																																																																															
JUN	3725	MSKCC	GRCh37	1	59248526	59248526	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	315	554	0	ENST00000371222.2:c.217T>G	p.Ser73Ala	p.S73A	ENST00000371222	NM_002228.3	73	Tcg/Gcg																																																																															
RB1	5925	MSKCC	GRCh37	13	49037924	49037924	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	203	406	0	ENST00000267163.4:c.2167delA	p.Ile723SerfsTer3	p.I723Sfs*3	ENST00000267163	NM_000321.2	722	Aaa/aa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021290	31021290	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	91	486	0	ENST00000375687.4:c.1289C>G	p.Ser430Ter	p.S430*	ENST00000375687	NM_015338.5	430	tCa/tGa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32790075	32790075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	30	201	0	ENST00000374899.4:c.1953G>A	p.Met651Ile	p.M651I	ENST00000374899	NM_018833.2	651	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0032426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	93	611	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0032426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	101	434	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593502	48593502	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	27	256	0	ENST00000342988.3:c.1253del	p.Ala418ValfsTer18	p.A418Vfs*18	ENST00000342988	NM_005359.5	418	gCt/gt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	89	524	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0032448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	162	687	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0033791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	368	567	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624269	89624269	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0033791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	234	353	0	ENST00000371953.3:c.43A>T	p.Arg15Ter	p.R15*	ENST00000371953	NM_000314.4	15	Aga/Tga																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436102	110436102	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	51	794	0	ENST00000375856.3:c.2299C>G	p.Leu767Val	p.L767V	ENST00000375856	NM_003749.2	767	Ctc/Gtc																																																																															
BLM	641	MSKCC	GRCh37	15	91333931	91333931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	371	580	0	ENST00000355112.3:c.2876G>A	p.Arg959Gln	p.R959Q	ENST00000355112	NM_000057.2	959	cGa/cAa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63526144	63526144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	1218	642	0	ENST00000307078.5:c.2482C>T	p.Leu828Phe	p.L828F	ENST00000307078	NM_004655.3	828	Ctc/Ttc																																																																															
CASP8	841	MSKCC	GRCh37	2	202149705	202149705	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	338	588	0	ENST00000358485.4:c.1146C>G	p.Ile382Met	p.I382M	ENST00000358485	NM_001080125.1	382	atC/atG																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138474618	138474629	+	inframe_deletion	In_Frame_Del	DEL	TTTTGAGTCTAA	TTTTGAGTCTAA	-			P-0033791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	183	368	0	ENST00000289153.2:c.364_375del	p.Leu122_Lys125del	p.L122_K125del	ENST00000289153	NM_006219.2	122	TTAGACTCAAAA/-																																																																															
TP63	8626	MSKCC	GRCh37	3	189526261	189526261	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1374	296	631	0	ENST00000264731.3:c.525C>G	p.His175Gln	p.H175Q	ENST00000264731	NM_003722.4	175	caC/caG																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044850	47044850	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	385	782	0	ENST00000329236.7:c.1942C>G	p.Arg648Gly	p.R648G	ENST00000329236	NM_001204466.1	648	Cga/Gga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151842344	151842344	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037587-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			355	43	355	0	ENST00000262189.6:c.14068C>T	p.Arg4690Ter	p.R4690*	ENST00000262189	NM_170606.2	4690	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0037587-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			520	47	445	0	ENST00000256078.4:c.34_35delGGinsTA	p.Gly12Tyr	p.G12Y	ENST00000256078	NM_033360.2	12	GGt/TAt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28979956	28979956	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037587-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			519	44	560	1	ENST00000282397.4:c.1512C>A	p.Ser504Arg	p.S504R	ENST00000282397	NM_002019.4	504	agC/agA																																																																															
MGA	23269	MSKCC	GRCh37	15	42005641	42005641	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037587-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	60	380	0	ENST00000219905.7:c.3379del	p.Glu1127ArgfsTer6	p.E1127Rfs*6	ENST00000219905	NM_001164273.1	1126	aGg/ag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600426	10600426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037587-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			638	87	688	0	ENST00000171111.5:c.1429G>A	p.Gly477Ser	p.G477S	ENST00000171111	NM_203500.1	477	Ggc/Agc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143352321	143352321	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0037587-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			489	31	503	0	ENST00000262992.4:c.91+1del		p.X31_splice	ENST00000262992	NM_001101669.1	31																																																																																
EGFR	1956	MSKCC	GRCh37	7	55249016	55249017	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCCACG			P-0039995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	81	180	0	ENST00000275493.2:c.2315_2320dup	p.His773_Val774insAlaHis	p.H773_V774insAH	ENST00000275493	NM_005228.3	772	ccc/cCCCACGcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0040004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	155	749	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	123	984	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838350	156838350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	67	1025	0	ENST00000524377.1:c.628G>A	p.Asp210Asn	p.D210N	ENST00000524377	NM_002529.3	210	Gac/Aac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374999	118374999	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	60	478	0	ENST00000534358.1:c.8392G>C	p.Asp2798His	p.D2798H	ENST00000534358	NM_005933.3	2798	Gat/Cat																																																																															
E2F3	1871	MSKCC	GRCh37	6	20490518	20490518	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	74	727	0	ENST00000346618.3:c.1255G>C	p.Glu419Gln	p.E419Q	ENST00000346618	NM_001949.4	419	Gaa/Caa																																																																															
TEK	7010	MSKCC	GRCh37	9	27158109	27158109	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	50	586	0	ENST00000380036.4:c.333C>G	p.Ile111Met	p.I111M	ENST00000380036	NM_000459.3	111	atC/atG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0040011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	101	534	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604673	48604673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	24	435	0	ENST00000342988.3:c.1495T>C	p.Cys499Arg	p.C499R	ENST00000342988	NM_005359.5	499	Tgc/Cgc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	27	435	0	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657633	37657633	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0040011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	98	623	0	ENST00000447079.4:c.2550T>A	p.Cys850Ter	p.C850*	ENST00000447079	NM_015083.1	850	tgT/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112174412	112174413	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	37	320	0	ENST00000257430.4:c.3124dup	p.Ser1042LysfsTer6	p.S1042Kfs*6	ENST00000257430	NM_000038.5	1041	caa/cAaa																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27840091	27840091	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0040011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	63	407	0	ENST00000328488.2:c.3G>A	p.Met1?	p.M1?	ENST00000328488	NM_003533.2	1	atG/atA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	44	333	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0040162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	115	535	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0040162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	159	608	0	ENST00000269305.4:c.782+1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
DDR2	4921	MSKCC	GRCh37	1	162725069	162725069	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	33	404	0	ENST00000367921.3:c.541G>C	p.Glu181Gln	p.E181Q	ENST00000367921	NM_006182.2	181	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577505	7577505	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	168	610	0	ENST00000269305.4:c.776A>C	p.Asp259Ala	p.D259A	ENST00000269305	NM_001126112.2	259	gAc/gCc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48018257	48018257	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	39	462	0	ENST00000234420.5:c.452A>G	p.Tyr151Cys	p.Y151C	ENST00000234420	NM_000179.2	151	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112178376	112178376	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	12	411	0	ENST00000257430.4:c.7085G>T	p.Gly2362Val	p.G2362V	ENST00000257430	NM_000038.5	2362	gGa/gTa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410792	63410792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	56	639	1	ENST00000330258.3:c.2375C>T	p.Ser792Phe	p.S792F	ENST00000330258	NM_152424.3	792	tCt/tTt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46276041	46276044	+	protein_altering_variant	In_Frame_Del	DEL	CATG	CATG	T			P-0040162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	73	559	0	ENST00000371998.3:c.3477_3480delinsT	p.Met1160del	p.M1160del	ENST00000371998		1159	atCATG/atT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	169	288	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	107	452	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597431	10597431	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	162	447	1	ENST00000171111.5:c.1772G>A	p.Trp591Ter	p.W591*	ENST00000171111	NM_203500.1	591	tGg/tAg																																																																															
ALK	238	MSKCC	GRCh37	2	29419652	29419652	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	43	280	0	ENST00000389048.3:c.4148T>C	p.Ile1383Thr	p.I1383T	ENST00000389048	NM_004304.4	1383	aTt/aCt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31508850	31508850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	22	363	1	ENST00000344624.3:c.1465G>A	p.Glu489Lys	p.E489K	ENST00000344624		489	Gag/Aag																																																																															
LYN	4067	MSKCC	GRCh37	8	56863290	56863290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	131	380	0	ENST00000519728.1:c.434C>A	p.Ala145Glu	p.A145E	ENST00000519728	NM_002350.3	145	gCa/gAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0012895-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			747	112	610	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
MED12	9968	MSKCC	GRCh37	X	70343020	70343020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012895-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			696	225	642	0	ENST00000374080.3:c.1561C>T	p.Arg521Cys	p.R521C	ENST00000374080		521	Cgt/Tgt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660144	227660144	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012895-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			737	128	748	0	ENST00000305123.5:c.3311del	p.Phe1104SerfsTer22	p.F1104Sfs*22	ENST00000305123	NM_005544.2	1104	tTc/tc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045115	47045115	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0012895-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			625	201	770	1	ENST00000329236.7:c.2122C>T	p.Gln708Ter	p.Q708*	ENST00000329236	NM_001204466.1	708	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0040010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	62	491	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TET1	80312	MSKCC	GRCh37	10	70450882	70450882	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200074832		P-0040010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	97	644	0	ENST00000373644.4:c.5722G>T	p.Ala1908Ser	p.A1908S	ENST00000373644	NM_030625.2	1908	Gct/Tct																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0040054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	80	284	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0040054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	87	340	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66526498	66526498	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	266	388	0	ENST00000358598.2:c.1054C>T	p.Arg352Ter	p.R352*	ENST00000358598	NM_212471.2	352	Cga/Tga																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724766	43724766	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	46	486	0	ENST00000382044.4:c.3301G>T	p.Val1101Phe	p.V1101F	ENST00000382044	NM_001141980.1	1101	Gtc/Ttc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17125842	17125842	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	194	610	1	ENST00000285071.4:c.752G>A	p.Trp251Ter	p.W251*	ENST00000285071	NM_144997.5	251	tGg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112175136	112175136	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0040054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	83	159	0	ENST00000257430.4:c.3845C>G	p.Ser1282Ter	p.S1282*	ENST00000257430	NM_000038.5	1282	tCa/tGa																																																																															
APC	324	MSKCC	GRCh37	5	112177241	112177244	+	frameshift_variant	Frame_Shift_Del	DEL	AATG	AATG	-			P-0040054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	60	265	0	ENST00000257430.4:c.5952_5955del	p.Glu1985LeufsTer58	p.E1985Lfs*58	ENST00000257430	NM_000038.5	1984	AATGaa/aa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0040055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	169	267	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591891	48591891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28936394		P-0040055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	66	318	0	ENST00000342988.3:c.1054G>A	p.Gly352Arg	p.G352R	ENST00000342988	NM_005359.5	352	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	388	549	1	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46254724	46254743	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGTAAAAAGTAAATGGCAA	TTGTAAAAAGTAAATGGCAA	-			P-0040055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	147	184	0	ENST00000334344.6:c.4916_4922+13del		p.X1639_splice	ENST00000334344	NM_152641.2	1639																																																																																
APC	324	MSKCC	GRCh37	5	112163652	112163652	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	74	187	0	ENST00000257430.4:c.1575C>A	p.Cys525Ter	p.C525*	ENST00000257430	NM_000038.5	525	tgC/tgA																																																																															
MED12	9968	MSKCC	GRCh37	X	70340823	70340823	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0040055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	207	364	0	ENST00000374080.3:c.556T>C	p.Trp186Arg	p.W186R	ENST00000374080		186	Tgg/Cgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0040116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	114	338	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0040116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	291	659	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0040116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	73	411	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0040116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	72	182	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777676	9777676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	179	525	1	ENST00000377346.4:c.1012C>T	p.Arg338Trp	p.R338W	ENST00000377346	NM_005026.3	338	Cgg/Tgg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120469123	120469123	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0040116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	161	364	0	ENST00000256646.2:c.4004C>T	p.Pro1335Leu	p.P1335L	ENST00000256646	NM_024408.3	1335	cCg/cTg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94224036	94224036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	97	409	0	ENST00000323929.3:c.116C>T	p.Thr39Ile	p.T39I	ENST00000323929	NM_005591.3	39	aCa/aTa																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125499143	125499143	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	86	386	0	ENST00000428830.2:c.306G>T	p.Met102Ile	p.M102I	ENST00000428830	NM_001114121.2	102	atG/atT																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981632	70981632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1439	292	759	0	ENST00000276594.2:c.464C>T	p.Ala155Val	p.A155V	ENST00000276594	NM_024504.3	155	gCg/gTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0040200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	186	104	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	299	235	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577045	7577045	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	352	289	0	ENST00000269305.4:c.893del	p.Glu298GlyfsTer47	p.E298Gfs*47	ENST00000269305	NM_001126112.2	298	gAg/gg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922196	39922196	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	313	205	0	ENST00000378444.4:c.3976G>T	p.Glu1326Ter	p.E1326*	ENST00000378444	NM_001123385.1	1326	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	214	485	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	180	779	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839736	27839745	+	frameshift_variant	Frame_Shift_Del	DEL	TAGTGACGCG	TAGTGACGCG	CAC			P-0040202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	118	627	0	ENST00000328488.2:c.349_358delinsGTG	p.Arg117ValfsTer?	p.R117Vfs*?	ENST00000328488	NM_003533.2	117	CGCGTCACTAtt/GTGtt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115723	8115724	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAT			P-0040203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	114	489	0	ENST00000346208.3:c.1070_1071insCATA	p.Lys357AsnfsTer15	p.K357Nfs*15	ENST00000346208		357	aag/aACATag																																																																															
CBFB	865	MSKCC	GRCh37	16	67063360	67063375	+	frameshift_variant	Frame_Shift_Del	DEL	TTTTTAGGAAGCTGAG	TTTTTAGGAAGCTGAG	-			P-0040203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	127	513	0	ENST00000412916.2:c.50_65del	p.Phe17SerfsTer67	p.F17Sfs*67	ENST00000412916		17	tTTTTTAGGAAGCTGAGc/tc																																																																															
CASP8	841	MSKCC	GRCh37	2	202131345	202131345	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	157	691	0	ENST00000358485.4:c.313C>T	p.Gln105Ter	p.Q105*	ENST00000358485	NM_001080125.1	105	Cag/Tag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120611957	120611957	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	25	92	0	ENST00000256646.2:c.64C>G	p.Pro22Ala	p.P22A	ENST00000256646	NM_024408.3	22	Ccc/Gcc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562669	95562669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	127	536	0	ENST00000343455.3:c.4588C>A	p.Pro1530Thr	p.P1530T	ENST00000343455	NM_177438.2	1530	Cca/Aca																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600356	10600356	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1208	232	957	0	ENST00000171111.5:c.1499T>C	p.Ile500Thr	p.I500T	ENST00000171111	NM_203500.1	500	aTc/aCc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143129620	143129620	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	115	482	0	ENST00000262992.4:c.1030C>A	p.Leu344Ile	p.L344I	ENST00000262992	NM_001101669.1	344	Cta/Ata																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	21	266	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	131	316	0	ENST00000288602.6:c.1397G>C	p.Gly466Ala	p.G466A	ENST00000288602	NM_004333.4	466	gGa/gCa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132500	11132500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	113	634	0	ENST00000344626.4:c.2716C>T	p.Arg906Cys	p.R906C	ENST00000344626	NM_003072.3	906	Cgc/Tgc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844801	156844801	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	418	616	0	ENST00000524377.1:c.1354+1G>T		p.X452_splice	ENST00000524377	NM_002529.3	452																																																																																
PAK7	57144	MSKCC	GRCh37	20	9543537	9543537	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	63	327	0	ENST00000353224.5:c.1616+1G>T		p.X539_splice	ENST00000353224	NM_177990.2	539																																																																																
FH	2271	MSKCC	GRCh37	1	241672078	241672078	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	96	245	0	ENST00000366560.3:c.563A>G	p.Asn188Ser	p.N188S	ENST00000366560	NM_000143.3	188	aAt/aGt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932420	36932420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	221	562	0	ENST00000361632.4:c.2049C>A	p.Phe683Leu	p.F683L	ENST00000361632		683	ttC/ttA																																																																															
PGR	5241	MSKCC	GRCh37	11	100998952	100998952	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	200	510	0	ENST00000325455.5:c.850G>T	p.Glu284Ter	p.E284*	ENST00000325455	NM_001202474.3	284	Gag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112329	115112329	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	58	184	0	ENST00000257566.3:c.1411C>A	p.Arg471Ser	p.R471S	ENST00000257566	NM_016569.3	471	Cgc/Agc																																																																															
POLE	5426	MSKCC	GRCh37	12	133201397	133201397	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	103	559	0	ENST00000320574.5:c.6748-1G>T		p.X2250_splice	ENST00000320574	NM_006231.2	2250																																																																																
MGA	23269	MSKCC	GRCh37	15	42057119	42057119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	210	521	1	ENST00000219905.7:c.7780G>A	p.Ala2594Thr	p.A2594T	ENST00000219905	NM_001164273.1	2594	Gcc/Acc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923461	9923462	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	79	399	0	ENST00000330684.3:c.1825dup	p.Trp609LeufsTer7	p.W609Lfs*7	ENST00000330684	NM_001134407.1	609	tgg/tTgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29548868	29548868	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	59	522	0	ENST00000358273.4:c.1642G>T	p.Ala548Ser	p.A548S	ENST00000358273	NM_001042492.2	548	Gct/Tct																																																																															
NF1	4763	MSKCC	GRCh37	17	29548939	29548940	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	74	282	0	ENST00000358273.4:c.1713_1714delinsTT	p.Trp571_Glu572delinsCysTer	p.W571_E572delinsC*	ENST00000358273	NM_001042492.2	571	tgGGag/tgTTag																																																																															
EP300	2033	MSKCC	GRCh37	22	41536221	41536221	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	76	393	0	ENST00000263253.7:c.1838G>C	p.Arg613Pro	p.R613P	ENST00000263253	NM_001429.3	613	cGg/cCg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851557	134851557	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	53	338	0	ENST00000398015.3:c.963C>A	p.Ser321Arg	p.S321R	ENST00000398015	NM_004441.4	321	agC/agA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66468001	66468001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	27	203	0	ENST00000273854.3:c.268G>A	p.Asp90Asn	p.D90N	ENST00000273854	NM_004439.5	90	Gat/Aat																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681131	117681131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	139	343	1	ENST00000368508.3:c.3489G>T	p.Lys1163Asn	p.K1163N	ENST00000368508	NM_002944.2	1163	aaG/aaT																																																																															
HGF	3082	MSKCC	GRCh37	7	81355239	81355239	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200948659		P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	38	221	2	ENST00000222390.5:c.1135C>A	p.Gln379Lys	p.Q379K	ENST00000222390	NM_000601.4	379	Caa/Aaa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500864	8500864	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	63	388	0	ENST00000356435.5:c.2018T>A	p.Leu673His	p.L673H	ENST00000356435		673	cTt/cAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038749	47038749	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	107	686	0	ENST00000329236.7:c.525G>T	p.Arg175Ser	p.R175S	ENST00000329236	NM_001204466.1	175	agG/agT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411773	63411773	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	158	669	1	ENST00000330258.3:c.1394C>G	p.Pro465Arg	p.P465R	ENST00000330258	NM_152424.3	465	cCc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0039086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	163	652	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0039086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	52	262	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	65	192	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324496	31324496	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	11	321	0	ENST00000412585.2:c.312C>A	p.Asn104Lys	p.N104K	ENST00000412585	NM_005514.6	104	aaC/aaA																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857645	9857645	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	75	363	1	ENST00000330684.3:c.3756G>T	p.Gln1252His	p.Q1252H	ENST00000330684	NM_001134407.1	1252	caG/caT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72994041	72994041	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	128	521	0	ENST00000268489.5:c.4G>T	p.Glu2Ter	p.E2*	ENST00000268489	NM_006885.3	2	Gaa/Taa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93953170	93953170	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	46	313	0	ENST00000369303.4:c.2971T>A	p.Leu991Ile	p.L991I	ENST00000369303	NM_004440.3	991	Tta/Ata																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44923029	44923029	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	48	397	0	ENST00000377967.4:c.1890del	p.Glu630AspfsTer61	p.E630Dfs*61	ENST00000377967	NM_021140.2	630	gaG/ga																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918342	44918343	+	frameshift_variant	Frame_Shift_Ins	INS	TC	TC	CCA			P-0039882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	16	239	0	ENST00000377967.4:c.967_968delinsCCA	p.Ser323ProfsTer41	p.S323Pfs*41	ENST00000377967	NM_021140.2	323	TCa/CCAa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	131	485	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	167	533	0	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057936	27057937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0040001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	131	564	0	ENST00000324856.7:c.1649_1650dup	p.Tyr551ProfsTer69	p.Y551Pfs*69	ENST00000324856	NM_006015.4	548	-/CC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0040019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	44	327	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	53	651	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724460	162724460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	46	474	0	ENST00000367921.3:c.232G>A	p.Val78Met	p.V78M	ENST00000367921	NM_006182.2	78	Gtg/Atg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163318853	163318853	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	22	192	0	ENST00000271452.3:c.1243G>T	p.Glu415Ter	p.E415*	ENST00000271452	NM_145697.2	415	Gag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	41988511	41988511	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	55	405	0	ENST00000219905.7:c.1303A>C	p.Asn435His	p.N435H	ENST00000219905	NM_001164273.1	435	Aac/Cac																																																																															
BARD1	580	MSKCC	GRCh37	2	215645529	215645529	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	66	457	0	ENST00000260947.4:c.1069A>G	p.Ile357Val	p.I357V	ENST00000260947	NM_000465.2	357	Ata/Gta																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026858	6026858	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	96	584	0	ENST00000265849.7:c.1538G>T	p.Ser513Ile	p.S513I	ENST00000265849	NM_000535.5	513	aGt/aTt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69012040	69012040	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	79	319	0	ENST00000288368.4:c.2677A>G	p.Ile893Val	p.I893V	ENST00000288368	NM_024870.2	893	Att/Gtt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	132	381	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0040033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	269	713	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967263	134967263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	438	662	1	ENST00000398015.3:c.2602C>T	p.Arg868Trp	p.R868W	ENST00000398015	NM_004441.4	868	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	116	512	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0039947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	244	889	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023769	27023769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	401	488	0	ENST00000324856.7:c.879del	p.Thr294ProfsTer69	p.T294Pfs*69	ENST00000324856	NM_006015.4	292	aCc/ac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039420	47039420	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	196	333	0	ENST00000329236.7:c.812T>G	p.Ile271Ser	p.I271S	ENST00000329236	NM_001204466.1	271	aTc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934578		P-0036637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	66	652	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255016	16255016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	24	385	0	ENST00000375759.3:c.2281G>A	p.Asp761Asn	p.D761N	ENST00000375759	NM_015001.2	761	Gac/Aac																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255058	16255058	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	29	403	0	ENST00000375759.3:c.2323G>C	p.Glu775Gln	p.E775Q	ENST00000375759	NM_015001.2	775	Gag/Cag																																																																															
STAT3	6774	MSKCC	GRCh37	17	40467819	40467819	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0036637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	35	459	0	ENST00000264657.5:c.2258-1G>A		p.X753_splice	ENST00000264657	NM_139276.2	753																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56152446	56152447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	68	203	0	ENST00000399503.3:c.505dup	p.Thr169AsnfsTer10	p.T169Nfs*10	ENST00000399503	NM_005921.1	168	gaa/gAaa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106536224	106536224	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	49	510	0	ENST00000369096.4:c.191A>T	p.Asp64Val	p.D64V	ENST00000369096	NM_001198.3	64	gAc/gTc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922994	44922994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	43	602	0	ENST00000377967.4:c.1855C>T	p.His619Tyr	p.H619Y	ENST00000377967	NM_021140.2	619	Cat/Tat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603048	48603049	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCGGCTACTGCACAAGCTGCAGCAGCT			P-0036737-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	25	376	0	ENST00000342988.3:c.1351_1378dup	p.Ala460GlyfsTer43	p.A460Gfs*43	ENST00000342988	NM_005359.5	450	cag/caGGCGGCTACTGCACAAGCTGCAGCAGCTg																																																																															
APC	324	MSKCC	GRCh37	5	112175991	112175991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036737-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	30	285	0	ENST00000257430.4:c.4700C>T	p.Ser1567Leu	p.S1567L	ENST00000257430	NM_000038.5	1567	tCa/tTa																																																																															
CIC	23152	MSKCC	GRCh37	19	42796856	42796856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	106	855	0	ENST00000575354.2:c.3314C>T	p.Ser1105Leu	p.S1105L	ENST00000575354	NM_015125.3	1105	tCa/tTa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948665	71948665	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	66	742	0	ENST00000298229.2:c.3377T>C	p.Met1126Thr	p.M1126T	ENST00000298229	NM_001567.3	1126	aTg/aCg																																																																															
RET	5979	MSKCC	GRCh37	10	43623605	43623605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	60	415	0	ENST00000355710.3:c.3233C>T	p.Thr1078Met	p.T1078M	ENST00000355710	NM_020975.4	1078	aCg/aTg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56878417	56878417	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs190188561		P-0037494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	52	338	0	ENST00000308159.5:c.2356C>T	p.Arg786Ter	p.R786*	ENST00000308159	NM_014669.4	786	Cga/Tga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15971304	15971304	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	54	465	0	ENST00000268712.3:c.4645C>G	p.Pro1549Ala	p.P1549A	ENST00000268712	NM_006311.3	1549	Ccc/Gcc																																																																															
STK19	8859	MSKCC	GRCh37	6	31946698	31946698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	51	415	0	ENST00000375331.2:c.586G>A	p.Gly196Arg	p.G196R	ENST00000375331	NM_004197.1	196	Ggg/Agg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279815	46279850	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCA	-			P-0037494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	53	396	1	ENST00000371998.3:c.3756_3791del	p.Gln1265_Gln1276del	p.Q1265_Q1276del	ENST00000371998		1247	atGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAg/atg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0038053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	14	360	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326695	62326695	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs140411308		P-0038053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	13	963	0	ENST00000482936.1:c.3514G>A	p.Glu1172Lys	p.E1172K	ENST00000482936		1172	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0039474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	263	585	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	87	363	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47158198	47158198	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	93	367	0	ENST00000409792.3:c.4501T>C	p.Cys1501Arg	p.C1501R	ENST00000409792	NM_014159.6	1501	Tgt/Cgt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3860714	3860714	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	132	501	0	ENST00000262367.5:c.865G>T	p.Gly289Ter	p.G289*	ENST00000262367	NM_004380.2	289	Gga/Tga																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46256439	46256439	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	263	411	0	ENST00000371998.3:c.667A>T	p.Thr223Ser	p.T223S	ENST00000371998		223	Aca/Tca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0040081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	572	602	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913233		P-0040081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	1054	718	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416523	49416710	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTCCATTCGGTGCGCAGCCGCCGGTACTGAGATGACTTGGAGTGCACAAACTGCTTGCTGTAGGGGGTGTTGGTCTCGCCTGTGAAGGTGCTCTGATATGCCTTAGACATGCTGGTGCTGTTCAGGGTATGGGGCCTGGGAGGTGATATAATCCATGACAAGACAGCTCTCCCTCAGACCAAGTACA	CTTCCATTCGGTGCGCAGCCGCCGGTACTGAGATGACTTGGAGTGCACAAACTGCTTGCTGTAGGGGGTGTTGGTCTCGCCTGTGAAGGTGCTCTGATATGCCTTAGACATGCTGGTGCTGTTCAGGGTATGGGGCCTGGGAGGTGATATAATCCATGACAAGACAGCTCTCCCTCAGACCAAGTACA	-			P-0040081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	190	518	0	ENST00000301067.7:c.16053-52_16188del		p.X5351_splice	ENST00000301067	NM_003482.3	5351																																																																																
RB1	5925	MSKCC	GRCh37	13	48952978	48953737	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTGTTAGATATGCAGTCAGTTATTGACCAAAAACGTTGTTATGCGGTGCATGATTATATATGAGATTTTTGCTCTTAGTTTGGAAGGAAATAATATGGTGTGTGTTTATATTTCTAAAATTTGGTTATTCTTTCAAATAATGGGAACTAGTTATTTGGCTAAAACTTCTTGCTCATAAGGTCAGTTTGATCTGATTTTTGCCTGTGTCAGTTTTACTAAATTTATGGACAAAGACTGTCCTCTTAATCCTGGACAGCTATCTTGAAAATACATGTCCTAGGTCATGAGAAATGTTATATAAGGTACATAAAGTGCTTAAAATAGTACTGGGCACATAACCTATCTTTAGTATGAATGATATAAACTGAAATGGAGTTAAGGAAATCCAGGTACTGGACCTACCCTCTTGTTAATTTACTTGGGAATGTTAATCACCACTTAATACTTAAGTTGTGAGTTTTAGACAAGCTAGCTTTTGTGTTGTCTTGGCGGCCATATTTGTAAGAAGGGTGAGAAGTATGTTTTAAGAAAAGGCTTTTTAAAAAATTTTAGTAATTGTCAGCTGGGTATAGTGGTACATGCCTATAATCCCAGCCTCTTGGGAGGCCAAAGCAGGAGGATCTCTTGAGCCCAGGAGTGTGAAGGCCAGCCTGGGCAAAACAGTGAGACTCCATCTCAAAAAAAAAAAAAATTTCATAATTGTGATTTTCTAAAATAGCAGGCTCTTATTTTTCTTTTTGTTTGTTTGTAGCGATACAA	ACTGTTAGATATGCAGTCAGTTATTGACCAAAAACGTTGTTATGCGGTGCATGATTATATATGAGATTTTTGCTCTTAGTTTGGAAGGAAATAATATGGTGTGTGTTTATATTTCTAAAATTTGGTTATTCTTTCAAATAATGGGAACTAGTTATTTGGCTAAAACTTCTTGCTCATAAGGTCAGTTTGATCTGATTTTTGCCTGTGTCAGTTTTACTAAATTTATGGACAAAGACTGTCCTCTTAATCCTGGACAGCTATCTTGAAAATACATGTCCTAGGTCATGAGAAATGTTATATAAGGTACATAAAGTGCTTAAAATAGTACTGGGCACATAACCTATCTTTAGTATGAATGATATAAACTGAAATGGAGTTAAGGAAATCCAGGTACTGGACCTACCCTCTTGTTAATTTACTTGGGAATGTTAATCACCACTTAATACTTAAGTTGTGAGTTTTAGACAAGCTAGCTTTTGTGTTGTCTTGGCGGCCATATTTGTAAGAAGGGTGAGAAGTATGTTTTAAGAAAAGGCTTTTTAAAAAATTTTAGTAATTGTCAGCTGGGTATAGTGGTACATGCCTATAATCCCAGCCTCTTGGGAGGCCAAAGCAGGAGGATCTCTTGAGCCCAGGAGTGTGAAGGCCAGCCTGGGCAAAACAGTGAGACTCCATCTCAAAAAAAAAAAAAATTTCATAATTGTGATTTTCTAAAATAGCAGGCTCTTATTTTTCTTTTTGTTTGTTTGTAGCGATACAA	-			P-0040081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			0	70	0	0	ENST00000267163.4:c.1333-749_1343del		p.X445_splice	ENST00000267163	NM_000321.2	445																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72828969	72828979	+	frameshift_variant	Frame_Shift_Del	DEL	CCAACTTACAC	CCAACTTACAC	-			P-0040081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	455	691	0	ENST00000268489.5:c.7602_7612del	p.Gln2534HisfsTer6	p.Q2534Hfs*6	ENST00000268489	NM_006885.3	2534	caGTGTAAGTTGGca/caca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	108	184	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	384	180	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112175360	112175360	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	65	107	0	ENST00000257430.4:c.4069G>T	p.Gly1357Ter	p.G1357*	ENST00000257430	NM_000038.5	1357	Gga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851754	134851754	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56396912		P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	308	196	0	ENST00000398015.3:c.1160C>T	p.Thr387Met	p.T387M	ENST00000398015	NM_004441.4	387	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112174171	112174171	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	155	160	0	ENST00000257430.4:c.2882del	p.Asn961MetfsTer4	p.N961Mfs*4	ENST00000257430	NM_000038.5	960	tcA/tc																																																																															
INHA	3623	MSKCC	GRCh37	2	220439632	220439632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	530	268	0	ENST00000243786.2:c.485C>T	p.Pro162Leu	p.P162L	ENST00000243786	NM_002191.3	162	cCc/cTc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36938287	36938287	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	204	225	0	ENST00000361632.4:c.674T>A	p.Val225Glu	p.V225E	ENST00000361632		225	gTg/gAg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26923213	26923213	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	28	96	0	ENST00000381527.3:c.209T>G	p.Leu70Arg	p.L70R	ENST00000381527	NM_001260.1	70	cTt/cGt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28611324	28611324	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	213	140	0	ENST00000241453.7:c.1307G>A	p.Arg436Lys	p.R436K	ENST00000241453	NM_004119.2	436	aGa/aAa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457302	67457302	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	182	248	0	ENST00000327367.4:c.276G>C	p.Trp92Cys	p.W92C	ENST00000327367	NM_005902.3	92	tgG/tgC																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943340	17943340	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	197	205	0	ENST00000458235.1:c.2668A>C	p.Ser890Arg	p.S890R	ENST00000458235	NM_000215.3	890	Agc/Cgc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480328	89480328	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	83	83	0	ENST00000336596.2:c.2165A>T	p.Gln722Leu	p.Q722L	ENST00000336596	NM_005233.5	722	cAg/cTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55955930	55955930	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	111	193	0	ENST00000263923.4:c.3232T>G	p.Phe1078Val	p.F1078V	ENST00000263923	NM_002253.2	1078	Ttt/Gtt																																																																															
PIM1	5292	MSKCC	GRCh37	6	37140879	37140879	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	186	202	0	ENST00000373509.5:c.715G>T	p.Asp239Tyr	p.D239Y	ENST00000373509	NM_002648.3	239	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0040097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	52	142	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0040097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	83	103	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
MAX	4149	MSKCC	GRCh37	14	65544748	65544748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	71	134	0	ENST00000358664.4:c.178C>T	p.Arg60Trp	p.R60W	ENST00000358664	NM_002382.4	60	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108206648	108206648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	39	114	0	ENST00000278616.4:c.8228C>T	p.Thr2743Met	p.T2743M	ENST00000278616	NM_000051.3	2743	aCg/aTg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134652	41134652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	51	125	0	ENST00000379561.5:c.976G>T	p.Gly326Trp	p.G326W	ENST00000379561	NM_002015.3	326	Ggg/Tgg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986878	36986878	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	119	59	0	ENST00000354822.5:c.811G>T	p.Gly271Cys	p.G271C	ENST00000354822	NM_001079668.2	271	Ggc/Tgc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662299	227662299	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	171	181	0	ENST00000305123.5:c.1156G>C	p.Ala386Pro	p.A386P	ENST00000305123	NM_005544.2	386	Gcc/Ccc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264430	46264430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	54	115	0	ENST00000371998.3:c.1477G>A	p.Ala493Thr	p.A493T	ENST00000371998		493	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112163703	112163703	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0040097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	30	75	0	ENST00000257430.4:c.1626G>T	p.Gln542His	p.Q542H	ENST00000257430	NM_000038.5	542	caG/caT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056743	180056743	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	212	181	0	ENST00000261937.6:c.769G>C	p.Glu257Gln	p.E257Q	ENST00000261937	NM_182925.4	257	Gag/Cag																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450310	50450310	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	121	169	0	ENST00000331340.3:c.494A>T	p.Lys165Met	p.K165M	ENST00000331340	NM_006060.4	165	aAg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578528	7578528	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1210	183	1004	0	ENST00000269305.4:c.402T>A	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	ttT/ttA																																																																															
PGR	5241	MSKCC	GRCh37	11	100922154	100922154	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0040099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	45	329	0	ENST00000325455.5:c.2357+1G>A		p.X786_splice	ENST00000325455	NM_001202474.3	786																																																																																
GLI1	2735	MSKCC	GRCh37	12	57864717	57864717	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	124	984	0	ENST00000228682.2:c.2194T>C	p.Tyr732His	p.Y732H	ENST00000228682	NM_005269.2	732	Tat/Cat																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660544	227660544	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1801278		P-0040099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	110	686	1	ENST00000305123.5:c.2911G>T	p.Gly971Trp	p.G971W	ENST00000305123	NM_005544.2	971	Ggg/Tgg																																																																															
BTK	695	MSKCC	GRCh37	X	100608279	100608279	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	107	810	0	ENST00000308731.7:c.1811G>C	p.Ser604Thr	p.S604T	ENST00000308731	NM_000061.2	604	aGt/aCt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	199	453	1	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																															
NUF2	83540	MSKCC	GRCh37	1	163318754	163318755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	157	364	0	ENST00000271452.3:c.1150dup	p.Arg384LysfsTer6	p.R384Kfs*6	ENST00000271452	NM_145697.2	382	gaa/gAaa																																																																															
PARP1	142	MSKCC	GRCh37	1	226570793	226570793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	230	540	1	ENST00000366794.5:c.1103C>T	p.Thr368Met	p.T368M	ENST00000366794	NM_001618.3	368	aCg/aTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	166	358	7	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
WT1	7490	MSKCC	GRCh37	11	32417947	32417947	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	254	405	0	ENST00000332351.3:c.1105C>T	p.Arg369Ter	p.R369*	ENST00000332351	NM_024426.4	369	Cga/Tga																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	187	339	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																															
PGR	5241	MSKCC	GRCh37	11	100999062	100999062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	203	498	0	ENST00000325455.5:c.740C>T	p.Ala247Val	p.A247V	ENST00000325455	NM_001202474.3	247	gCg/gTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118371742	118371742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	30	238	0	ENST00000534358.1:c.6199C>T	p.Arg2067Cys	p.R2067C	ENST00000534358	NM_005933.3	2067	Cgc/Tgc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487211	56487211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	220	506	0	ENST00000267101.3:c.1357C>T	p.Arg453Cys	p.R453C	ENST00000267101	NM_001982.3	453	Cgt/Tgt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	341	777	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
POLE	5426	MSKCC	GRCh37	12	133214688	133214688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	250	531	0	ENST00000320574.5:c.5590A>G	p.Ile1864Val	p.I1864V	ENST00000320574	NM_006231.2	1864	Atc/Gtc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515036	103515036	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775996769		P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	134	278	0	ENST00000355739.4:c.1537G>A	p.Ala513Thr	p.A513T	ENST00000355739	NM_000123.3	513	Gca/Aca																																																																															
AKT1	207	MSKCC	GRCh37	14	105246478	105246478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	59	683	0	ENST00000349310.3:c.122G>A	p.Arg41Gln	p.R41Q	ENST00000349310	NM_001014432.1	41	cGg/cAg																																																																															
B2M	567	MSKCC	GRCh37	15	45007740	45007740	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	163	326	0	ENST00000558401.1:c.187G>T	p.Gly63Ter	p.G63*	ENST00000558401	NM_004048.2	63	Gga/Tga																																																																															
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	185	329	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640313	3640313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	377	885	0	ENST00000294008.3:c.3326G>A	p.Cys1109Tyr	p.C1109Y	ENST00000294008	NM_032444.2	1109	tGc/tAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820581	3820581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	317	643	0	ENST00000262367.5:c.2870C>T	p.Pro957Leu	p.P957L	ENST00000262367	NM_004380.2	957	cCt/cTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821343	72821344	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	94	372	0	ENST00000268489.5:c.10831dup	p.His3611ProfsTer55	p.H3611Pfs*55	ENST00000268489	NM_006885.3	3611	cac/cCac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828662	72828662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	326	584	0	ENST00000268489.5:c.7919G>A	p.Arg2640Lys	p.R2640K	ENST00000268489	NM_006885.3	2640	aGa/aAa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81925131	81925131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	159	479	1	ENST00000359376.3:c.922G>A	p.Ala308Thr	p.A308T	ENST00000359376	NM_002661.3	308	Gcg/Acg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7982763	7982763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	254	644	1	ENST00000319144.4:c.1022G>A	p.Cys341Tyr	p.C341Y	ENST00000319144	NM_001139.2	341	tGc/tAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29585444	29585444	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	43	465	0	ENST00000358273.4:c.4256T>C	p.Val1419Ala	p.V1419A	ENST00000358273	NM_001042492.2	1419	gTc/gCc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37864772	37864772	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	213	413	0	ENST00000269571.5:c.424C>A	p.Leu142Ile	p.L142I	ENST00000269571		142	Ctt/Att																																																																															
EZH1	2145	MSKCC	GRCh37	17	40858072	40858072	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	257	575	0	ENST00000428826.2:c.1792A>G	p.Lys598Glu	p.K598E	ENST00000428826		598	Aag/Gag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435162	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	298	660	0	ENST00000407977.2:c.1975_1976delGG	p.Gly659SerfsTer87	p.G659Sfs*87	ENST00000407977		659	GGt/t																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	204	492	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	308	696	1	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1623979	1623979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	49	607	0	ENST00000344749.5:c.520C>T	p.Arg174Trp	p.R174W	ENST00000344749	NM_001136139.2	174	Cgg/Tgg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4123835	4123835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	135	340	0	ENST00000262948.5:c.38C>T	p.Thr13Ile	p.T13I	ENST00000262948	NM_030662.3	13	aCc/aTc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222730	5222731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	40	449	1	ENST00000357368.4:c.3072dupC	p.Val1025ArgfsTer34	p.V1025Rfs*34	ENST00000357368	NM_002850.3	1024	-/C																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222936	5222936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	178	329	0	ENST00000357368.4:c.2867C>T	p.Ala956Val	p.A956V	ENST00000357368	NM_002850.3	956	gCc/gTc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10260622	10260622	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	218	458	0	ENST00000340748.4:c.2240A>G	p.Tyr747Cys	p.Y747C	ENST00000340748		747	tAt/tGt																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793280	33793280	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	83	140	2	ENST00000498907.2:c.41del	p.Pro14ArgfsTer2	p.P14Rfs*2	ENST00000498907	NM_004364.3	14	cCg/cg																																																																															
ALK	238	MSKCC	GRCh37	2	29449864	29449864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	340	892	0	ENST00000389048.3:c.2991G>T	p.Met997Ile	p.M997I	ENST00000389048	NM_004304.4	997	atG/atT																																																																															
ACVR1	90	MSKCC	GRCh37	2	158594993	158594993	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	190	431	0	ENST00000263640.3:c.1354C>T	p.Gln452Ter	p.Q452*	ENST00000263640	NM_001105.4	452	Caa/Taa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212587117	212587117	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	141	268	0	ENST00000342788.4:c.883+1G>A		p.X295_splice	ENST00000342788	NM_005235.2	295																																																																																
CUL3	8452	MSKCC	GRCh37	2	225339038	225339038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	200	385	0	ENST00000264414.4:c.2231G>A	p.Arg744His	p.R744H	ENST00000264414	NM_003590.4	744	cGt/cAt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31389156	31389156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	241	526	2	ENST00000328111.2:c.2069G>A	p.Arg690Gln	p.R690Q	ENST00000328111	NM_006892.3	690	cGg/cAg																																																																															
NF2	4771	MSKCC	GRCh37	22	30032801	30032801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	224	366	0	ENST00000338641.4:c.176C>T	p.Thr59Ile	p.T59I	ENST00000338641	NM_000268.3	59	aCc/aTc																																																																															
EP300	2033	MSKCC	GRCh37	22	41523722	41523722	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	240	678	0	ENST00000263253.7:c.1138A>G	p.Thr380Ala	p.T380A	ENST00000263253	NM_001429.3	380	Aca/Gca																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	164	318	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	137	254	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SDHA	6389	MSKCC	GRCh37	5	236708	236708	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	89	158	0	ENST00000264932.6:c.1426A>G	p.Arg476Gly	p.R476G	ENST00000264932	NM_004168.2	476	Agg/Ggg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161221	56161221	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781300314		P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	213	384	0	ENST00000399503.3:c.1090C>T	p.Arg364Trp	p.R364W	ENST00000399503	NM_005921.1	364	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112170772	112170772	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765557332		P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	240	532	1	ENST00000257430.4:c.1868G>A	p.Arg623Gln	p.R623Q	ENST00000257430	NM_000038.5	623	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	149	348	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	142	252	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
RAD50	10111	MSKCC	GRCh37	5	131953842	131953842	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	96	342	0	ENST00000265335.6:c.3245A>G	p.Glu1082Gly	p.E1082G	ENST00000265335		1082	gAa/gGa																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271534	26271534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	273	315	0	ENST00000305910.3:c.79C>T	p.Arg27Trp	p.R27W	ENST00000305910	NM_003534.2	27	Cgg/Tgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32191658	32191659	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGCAGC			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	230	683	0	ENST00000375023.3:c.42_47dup	p.Leu15_Leu16dup	p.L15_L16dup	ENST00000375023	NM_004557.3	15	cta/ctGCTGCTa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798477	32798477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	649	687	0	ENST00000374899.4:c.1379C>T	p.Ala460Val	p.A460V	ENST00000374899	NM_018833.2	460	gCc/gTc																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43749743	43749743	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376388064		P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	69	491	0	ENST00000523873.1:c.596C>T	p.Pro199Leu	p.P199L	ENST00000523873		199	cCg/cTg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129310	152129310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	251	548	0	ENST00000206249.3:c.263C>T	p.Ala88Val	p.A88V	ENST00000206249	NM_000125.3	88	gCg/gTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968322	2968323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	341	631	1	ENST00000396946.4:c.1663dupC	p.Arg555ProfsTer38	p.R555Pfs*38	ENST00000396946	NM_032415.4	555	cgg/cCgg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729384	41729384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	250	502	0	ENST00000242208.4:c.1145G>A	p.Ser382Asn	p.S382N	ENST00000242208	NM_002192.2	382	aGc/aAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	170	372	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882057	36882057	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	314	708	1	ENST00000358127.4:c.956T>C	p.Val319Ala	p.V319A	ENST00000358127	NM_001280556.1	319	gTc/gCc																																																																															
SYK	6850	MSKCC	GRCh37	9	93607789	93607789	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	159	352	2	ENST00000375746.1:c.496del	p.Met166CysfsTer18	p.M166Cfs*18	ENST00000375746	NM_001174167.1	164	gAa/ga																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139418253	139418253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	377	759	0	ENST00000277541.6:c.319C>A	p.Leu107Ile	p.L107I	ENST00000277541	NM_017617.3	107	Ctc/Atc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412473	63412473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	278	802	0	ENST00000330258.3:c.694del	p.Gln232LysfsTer50	p.Q232Kfs*50	ENST00000330258	NM_152424.3	232	Caa/aa																																																																															
ATRX	546	MSKCC	GRCh37	X	76763872	76763872	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	264	533	0	ENST00000373344.5:c.7436T>A	p.Met2479Lys	p.M2479K	ENST00000373344	NM_000489.3	2479	aTg/aAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76776354	76776354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	191	462	1	ENST00000373344.5:c.7112C>T	p.Ala2371Val	p.A2371V	ENST00000373344	NM_000489.3	2371	gCg/gTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0040108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	54	277	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577515	7577515	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000012-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			113	114	569	0	ENST00000269305.4:c.766A>C	p.Thr256Pro	p.T256P	ENST00000269305	NM_001126112.2	256	Aca/Cca																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521514	46521514	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			604	129	1243	0	ENST00000262741.5:c.894C>G	p.Ile298Met	p.I298M	ENST00000262741	NM_003629.3	298	atC/atG																																																																															
ATR	545	MSKCC	GRCh37	3	142178126	142178126	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			398	84	580	1	ENST00000350721.4:c.7292G>T	p.Arg2431Met	p.R2431M	ENST00000350721	NM_001184.3	2431	aGg/aTg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139732	55139732	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			454	116	811	0	ENST00000257290.5:c.1393T>A	p.Leu465Met	p.L465M	ENST00000257290	NM_006206.4	465	Ttg/Atg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249542	153249542	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			248	85	458	0	ENST00000281708.4:c.1237-1G>T		p.X413_splice	ENST00000281708	NM_033632.3	413																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153332775	153332775	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			440	130	908	0	ENST00000281708.4:c.181G>T	p.Gly61Ter	p.G61*	ENST00000281708	NM_033632.3	61	Gga/Tga																																																																															
SDHA	6389	MSKCC	GRCh37	5	240484	240484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			234	28	343	0	ENST00000264932.6:c.1444C>T	p.Pro482Ser	p.P482S	ENST00000264932	NM_004168.2	482	Cct/Tct																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160630	56160630	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			341	72	641	2	ENST00000399503.3:c.904G>T	p.Glu302Ter	p.E302*	ENST00000399503	NM_005921.1	302	Gag/Tag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56174930	56174930	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			227	57	427	0	ENST00000399503.3:c.2087+2T>G		p.X696_splice	ENST00000399503	NM_005921.1	696																																																																																
NSD1	64324	MSKCC	GRCh37	5	176696637	176696637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			249	60	763	0	ENST00000439151.2:c.5338G>T	p.Val1780Phe	p.V1780F	ENST00000439151	NM_022455.4	1780	Gtt/Ttt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056365	180056365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			193	42	788	0	ENST00000261937.6:c.879C>A	p.Ser293Arg	p.S293R	ENST00000261937	NM_182925.4	293	agC/agA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151871275	151871275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			437	95	897	0	ENST00000262189.6:c.9315A>T	p.Lys3105Asn	p.K3105N	ENST00000262189	NM_170606.2	3105	aaA/aaT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8436666	8436666	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			318	135	686	0	ENST00000356435.5:c.4012C>A	p.Pro1338Thr	p.P1338T	ENST00000356435		1338	Ccc/Acc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486074	8486074	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			439	94	921	0	ENST00000356435.5:c.2743G>T	p.Glu915Ter	p.E915*	ENST00000356435		915	Gaa/Taa																																																																															
RET	5979	MSKCC	GRCh37	10	43609039	43609039	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			196	46	480	0	ENST00000355710.3:c.1795C>A	p.Pro599Thr	p.P599T	ENST00000355710	NM_020975.4	599	Ccc/Acc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	472166	472166	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			316	87	835	0	ENST00000399788.2:c.635A>T	p.Asn212Ile	p.N212I	ENST00000399788	NM_001042603.1	212	aAc/aTc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18719971	18719971	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			351	112	627	0	ENST00000266497.5:c.3868G>T	p.Val1290Leu	p.V1290L	ENST00000266497		1290	Gta/Tta																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422025	81422025	+	start_lost	Translation_Start_Site	SNP	A	A	T			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			292	42	457	0	ENST00000298171.2:c.1A>T	p.Met1?	p.M1?	ENST00000298171	NM_000369.2	1	Atg/Ttg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778565	3778565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			203	67	640	0	ENST00000262367.5:c.6483G>T	p.Met2161Ile	p.M2161I	ENST00000262367	NM_004380.2	2161	atG/atT																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59876623	59876623	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			538	92	791	0	ENST00000259008.2:c.1178A>T	p.Asp393Val	p.D393V	ENST00000259008	NM_032043.2	393	gAt/gTt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534396	63534396	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			561	89	885	0	ENST00000307078.5:c.1125C>G	p.Ile375Met	p.I375M	ENST00000307078	NM_004655.3	375	atC/atG																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2207631	2207631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			324	61	958	0	ENST00000398665.3:c.915G>T	p.Trp305Cys	p.W305C	ENST00000398665	NM_032482.2	305	tgG/tgT																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5211674	5211674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			255	42	806	5	ENST00000357368.4:c.5161C>T	p.Arg1721Trp	p.R1721W	ENST00000357368	NM_002850.3	1721	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144050	11144050	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			313	82	894	4	ENST00000344626.4:c.3631G>T	p.Glu1211Ter	p.E1211*	ENST00000344626	NM_003072.3	1211	Gag/Tag																																																																															
CCNE1	898	MSKCC	GRCh37	19	30303904	30303904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			222	39	571	0	ENST00000262643.3:c.140C>T	p.Ala47Val	p.A47V	ENST00000262643	NM_001238.2	47	gCc/gTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739128	40739128	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			243	13	420	0	ENST00000373198.4:c.3157-1G>C		p.X1053_splice	ENST00000373198	NM_133170.3	1053																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40748610	40748610	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			380	63	769	0	ENST00000373198.4:c.2906G>T	p.Gly969Val	p.G969V	ENST00000373198	NM_133170.3	969	gGa/gTa																																																																															
ATRX	546	MSKCC	GRCh37	X	76937801	76937801	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			446	110	1451	0	ENST00000373344.5:c.2947A>T	p.Lys983Ter	p.K983*	ENST00000373344	NM_000489.3	983	Aag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81335719	81335719	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			505	83	655	0	ENST00000222390.5:c.1641del	p.Trp547CysfsTer35	p.W547Cfs*35	ENST00000222390	NM_000601.4	547	tgG/tg																																																																															
BLM	641	MSKCC	GRCh37	15	91298168	91298168	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			294	43	411	0	ENST00000355112.3:c.1087+1del		p.A363fs	ENST00000355112	NM_000057.2	363	Gct/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7579487	7579487	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000012-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			131	88	544	0	ENST00000269305.4:c.200del	p.Pro67GlnfsTer56	p.P67Qfs*56	ENST00000269305	NM_001126112.2	67	cCa/ca																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176132107	176132107	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			872	248	406	0	ENST00000367669.3:c.660G>T	p.Gln220His	p.Q220H	ENST00000367669	NM_022457.5	220	caG/caT																																																																															
REL	5966	MSKCC	GRCh37	2	61121637	61121637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			530	157	341	2	ENST00000295025.8:c.259G>T	p.Gly87Cys	p.G87C	ENST00000295025	NM_002908.2	87	Ggc/Tgc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660531	227660531	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	171	263	0	ENST00000305123.5:c.2924T>C	p.Ile975Thr	p.I975T	ENST00000305123	NM_005544.2	975	aTt/aCt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405633	139405635	+	missense_variant	Missense_Mutation	ONP	AAG	AAG	CTC			P-0000082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			629	144	424	0	ENST00000277541.6:c.2556_2558delinsGAG	p.Ser852_Phe853delinsArgSer	p.S852_F853delinsRS	ENST00000277541	NM_017617.3	852	agCTTc/agGAGc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413143	139413143	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			546	213	354	0	ENST00000277541.6:c.999C>G	p.Ser333Arg	p.S333R	ENST00000277541	NM_017617.3	333	agC/agG																																																																															
RET	5979	MSKCC	GRCh37	10	43597822	43597822	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0000082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			983	382	643	0	ENST00000355710.3:c.370A>T	p.Lys124Ter	p.K124*	ENST00000355710	NM_020975.4	124	Aag/Tag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18719941	18719941	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			750	213	474	0	ENST00000266497.5:c.3838C>G	p.Leu1280Val	p.L1280V	ENST00000266497		1280	Cta/Gta																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18762501	18762501	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			752	352	492	0	ENST00000266497.5:c.3997C>G	p.Gln1333Glu	p.Q1333E	ENST00000266497		1333	Cag/Gag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			812	343	465	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549284	21549285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0000082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	334	609	0	ENST00000382592.4:c.2991_2992delinsAT	p.Met997_Asp998delinsIleTyr	p.M997_D998delinsIY	ENST00000382592	NM_014572.2	997	atGGac/atATac																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134449	2134449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			637	174	565	0	ENST00000219476.3:c.4226G>A	p.Arg1409Gln	p.R1409Q	ENST00000219476	NM_000548.3	1409	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0000082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	171	294	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0000407-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			125	305	225	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425050	49425050	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000407-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	206	383	0	ENST00000301067.7:c.13438T>G	p.Ser4480Ala	p.S4480A	ENST00000301067	NM_003482.3	4480	Tcc/Gcc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473780	67473780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000407-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			232	59	203	0	ENST00000327367.4:c.860G>A	p.Arg287Gln	p.R287Q	ENST00000327367	NM_005902.3	287	cGg/cAg																																																																															
CIC	23152	MSKCC	GRCh37	19	42791346	42791346	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000407-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			149	180	279	0	ENST00000575354.2:c.406G>T	p.Gly136Ter	p.G136*	ENST00000575354	NM_015125.3	136	Gga/Tga																																																																															
STAG2	10735	MSKCC	GRCh37	X	123202444	123202444	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0000407-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	391	451	0	ENST00000218089.9:c.2296A>T	p.Arg766Ter	p.R766*	ENST00000218089	NM_001042749.1	766	Aga/Tga																																																																															
CDK8	1024	MSKCC	GRCh37	13	26911720	26911735	+	frameshift_variant	Frame_Shift_Del	DEL	TATGCTTTAAAACAAA	TATGCTTTAAAACAAA	-			P-0000407-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	103	263	0	ENST00000381527.3:c.147_162delTGCTTTAAAACAAATA	p.Tyr49Ter	p.Y49*	ENST00000381527	NM_001260.1	49	TATGCTTTAAAACAAAta/ta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000414-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			90	29	147	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382185	152382185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000414-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			162	57	385	0	ENST00000206249.3:c.1295C>T	p.Ser432Leu	p.S432L	ENST00000206249	NM_000125.3	432	tCa/tTa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252880	36252881	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000432-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			524	165	145	0	ENST00000300305.3:c.481dupC	p.Leu161ProfsTer52	p.L161Pfs*52	ENST00000300305		161	ctc/cCtc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			166	102	165	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	215	334	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259439	55259439	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			369	116	190	0	ENST00000275493.2:c.2497T>A	p.Leu833Met	p.L833M	ENST00000275493	NM_005228.3	833	Ttg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0000550-T05-IM3									Unknown	SOMATIC				MSK-IMPACT			785	46	457	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	223	405	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131915589	131915589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			70	179	135	0	ENST00000265335.6:c.587G>T	p.Arg196Leu	p.R196L	ENST00000265335		196	cGt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			97	153	499	1	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
PIK3CD	5293	MSKCC	GRCh37	1	9781596	9781596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			192	112	389	0	ENST00000377346.4:c.1906C>T	p.Arg636Trp	p.R636W	ENST00000377346	NM_005026.3	636	Cgg/Tgg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162722951	162722951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			235	128	411	0	ENST00000367921.3:c.149G>A	p.Ser50Asn	p.S50N	ENST00000367921	NM_006182.2	50	aGt/aAt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193107223	193107223	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	121	159	0	ENST00000367435.3:c.432G>T	p.Glu144Asp	p.E144D	ENST00000367435	NM_024529.4	144	gaG/gaT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566745	212566745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			300	175	342	0	ENST00000342788.4:c.1436G>T	p.Ser479Ile	p.S479I	ENST00000342788	NM_005235.2	479	aGc/aTc																																																																															
KIT	3815	MSKCC	GRCh37	4	55575633	55575633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	284	463	0	ENST00000288135.5:c.1159G>A	p.Gly387Arg	p.G387R	ENST00000288135	NM_000222.2	387	Gga/Aga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231742	66231742	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	120	371	0	ENST00000273854.3:c.1958C>A	p.Pro653Gln	p.P653Q	ENST00000273854	NM_004439.5	653	cCa/cAa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521865	157521865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	237	247	1	ENST00000346085.5:c.4137G>A	p.Met1379Ile	p.M1379I	ENST00000346085	NM_020732.3	1379	atG/atA																																																																															
IDH2	3418	MSKCC	GRCh37	15	90633783	90633783	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	198	440	0	ENST00000330062.3:c.301G>C	p.Ala101Pro	p.A101P	ENST00000330062	NM_002168.2	101	Gca/Cca																																																																															
STK11	6794	MSKCC	GRCh37	19	1220622	1220622	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			86	148	438	0	ENST00000326873.7:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000326873	NM_000455.4	214	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597395	10597395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	139	429	0	ENST00000171111.5:c.1808G>T	p.Gly603Val	p.G603V	ENST00000171111	NM_203500.1	603	gGg/gTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40899093	40899093	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	143	566	0	ENST00000373198.4:c.2177C>T	p.Ala726Val	p.A726V	ENST00000373198	NM_133170.3	726	gCa/gTa																																																																															
ATRX	546	MSKCC	GRCh37	X	76778801	76778801	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	124	664	0	ENST00000373344.5:c.6778C>A	p.His2260Asn	p.H2260N	ENST00000373344	NM_000489.3	2260	Cac/Aac																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081618	143081618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000909-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			397	61	316	0	ENST00000262992.4:c.1456C>T	p.Pro486Ser	p.P486S	ENST00000262992	NM_001101669.1	486	Ccc/Tcc																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032209	26032209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000909-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			130	17	80	0	ENST00000244661.2:c.80G>A	p.Arg27His	p.R27H	ENST00000244661	NM_003537.3	27	cGc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70347191	70347191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001332-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	396	201	1	ENST00000374080.3:c.2855G>A	p.Cys952Tyr	p.C952Y	ENST00000374080		952	tGt/tAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0001338-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			523	176	273	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0001338-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			374	350	436	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0001338-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			252	244	251	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
BARD1	580	MSKCC	GRCh37	2	215610560	215610560	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001340-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			969	85	363	0	ENST00000260947.4:c.1696A>G	p.Arg566Gly	p.R566G	ENST00000260947	NM_000465.2	566	Agg/Ggg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056541	26056541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001340-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			421	93	169	0	ENST00000343677.2:c.116C>T	p.Pro39Leu	p.P39L	ENST00000343677	NM_005319.3	39	cCg/cTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270504	98270504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001340-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			521	65	290	0	ENST00000331920.6:c.140G>A	p.Arg47Gln	p.R47Q	ENST00000331920	NM_000264.3	47	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0001340-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			603	56	367	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
NF1	4763	MSKCC	GRCh37	17	29663658	29663658	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001340-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			986	97	433	0	ENST00000358273.4:c.6153T>G	p.Ile2051Met	p.I2051M	ENST00000358273	NM_001042492.2	2051	atT/atG																																																																															
AXL	558	MSKCC	GRCh37	19	41763410	41763410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001340-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			927	84	538	0	ENST00000301178.4:c.2209G>A	p.Val737Met	p.V737M	ENST00000301178	NM_021913.4	737	Gtg/Atg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94201058	94201058	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0001341-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	151	504	0	ENST00000323929.3:c.1019T>C	p.Ile340Thr	p.I340T	ENST00000323929	NM_005591.3	340	aTt/aCt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16012157	16012157	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001341-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			202	338	550	0	ENST00000268712.3:c.2125C>T	p.Gln709Ter	p.Q709*	ENST00000268712	NM_006311.3	709	Cag/Tag																																																																															
ATRX	546	MSKCC	GRCh37	X	76812991	76812991	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001341-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	142	625	1	ENST00000373344.5:c.6630T>G	p.Phe2210Leu	p.F2210L	ENST00000373344	NM_000489.3	2210	ttT/ttG																																																																															
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001365-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	290	287	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																															
NF2	4771	MSKCC	GRCh37	22	30054221	30054221	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001365-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	381	446	1	ENST00000338641.4:c.643G>T	p.Glu215Ter	p.E215*	ENST00000338641	NM_000268.3	215	Gag/Tag																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794475	242794475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001365-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	327	355	0	ENST00000334409.5:c.467C>A	p.Pro156His	p.P156H	ENST00000334409	NM_005018.2	156	cCc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434531	49434531	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001365-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			109	206	173	0	ENST00000301067.7:c.7022A>G	p.Gln2341Arg	p.Q2341R	ENST00000301067	NM_003482.3	2341	cAg/cGg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748606	40748606	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001365-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	265	393	0	ENST00000373198.4:c.2910C>A	p.Tyr970Ter	p.Y970*	ENST00000373198	NM_133170.3	970	taC/taA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0001368-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	170	250	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001368-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			430	156	226	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP63	8626	MSKCC	GRCh37	3	189612029	189612029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			192	22	285	0	ENST00000264731.3:c.1781G>T	p.Arg594Leu	p.R594L	ENST00000264731	NM_003722.4	594	cGa/cTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151875096	151875096	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0001372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			68	43	101	0	ENST00000262189.6:c.7443-1G>T		p.X2481_splice	ENST00000262189	NM_170606.2	2481																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118352470	118352470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			145	30	189	0	ENST00000534358.1:c.3675G>T	p.Lys1225Asn	p.K1225N	ENST00000534358	NM_005933.3	1225	aaG/aaT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435931	49435931	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			262	46	586	0	ENST00000301067.7:c.6050C>G	p.Thr2017Ser	p.T2017S	ENST00000301067	NM_003482.3	2017	aCc/aGc																																																																															
MDM2	4193	MSKCC	GRCh37	12	69210676	69210676	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			548	39	294	0	ENST00000462284.1:c.259C>A	p.Leu87Ile	p.L87I	ENST00000462284	NM_002392.5	87	Ctt/Att																																																																															
MDM2	4193	MSKCC	GRCh37	12	69222562	69222562	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			476	43	296	0	ENST00000462284.1:c.535G>T	p.Asp179Tyr	p.D179Y	ENST00000462284	NM_002392.5	179	Gat/Tat																																																																															
TSC2	7249	MSKCC	GRCh37	16	2108765	2108765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			158	73	557	1	ENST00000219476.3:c.866C>T	p.Ala289Val	p.A289V	ENST00000219476	NM_000548.3	289	gCg/gTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70349200	70349200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	63	822	0	ENST00000374080.3:c.3612C>A	p.Asp1204Glu	p.D1204E	ENST00000374080		1204	gaC/gaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577146	7577147	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			152	86	467	0	ENST00000269305.4:c.791dup	p.Leu265ThrfsTer7	p.L265Tfs*7	ENST00000269305	NM_001126112.2	264	cta/ctTa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			574	33	274	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45800152	45800152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			570	93	472	0	ENST00000372115.3:c.68G>A	p.Gly23Glu	p.G23E	ENST00000372115	NM_001048171.1	23	gGa/gAa																																																																															
CUL3	8452	MSKCC	GRCh37	2	225360595	225360595	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			632	98	501	0	ENST00000264414.4:c.1796T>G	p.Met599Arg	p.M599R	ENST00000264414	NM_003590.4	599	aTg/aGg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201686	66201686	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			775	114	638	0	ENST00000273854.3:c.2816C>G	p.Pro939Arg	p.P939R	ENST00000273854	NM_004439.5	939	cCa/cGa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517807	187517807	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	61	299	0	ENST00000441802.2:c.12887G>T	p.Arg4296Leu	p.R4296L	ENST00000441802	NM_005245.3	4296	cGa/cTa																																																																															
HGF	3082	MSKCC	GRCh37	7	81334991	81334991	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			569	52	383	0	ENST00000222390.5:c.1836C>A	p.Cys612Ter	p.C612*	ENST00000222390	NM_000601.4	612	tgC/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913535		P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			682	290	479	0	ENST00000256078.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000256078	NM_033360.2	13	Ggc/Cgc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89882287	89882287	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			530	109	495	0	ENST00000389301.3:c.187G>C	p.Glu63Gln	p.E63Q	ENST00000389301	NM_000135.2	63	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			521	191	462	0	ENST00000269305.4:c.817C>G	p.Arg273Gly	p.R273G	ENST00000269305	NM_001126112.2	273	Cgt/Ggt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221947	1221947	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			515	120	359	0	ENST00000326873.7:c.863-1G>A		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10610154	10610154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			392	79	351	0	ENST00000171111.5:c.556G>T	p.Gly186Cys	p.G186C	ENST00000171111	NM_203500.1	186	Ggc/Tgc																																																																															
MED12	9968	MSKCC	GRCh37	X	70349664	70349664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			660	67	499	0	ENST00000374080.3:c.3826G>T	p.Asp1276Tyr	p.D1276Y	ENST00000374080		1276	Gat/Tat																																																																															
ATRX	546	MSKCC	GRCh37	X	76944336	76944336	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			806	99	729	0	ENST00000373344.5:c.569C>A	p.Pro190His	p.P190H	ENST00000373344	NM_000489.3	190	cCt/cAt																																																																															
SDHC	6391	MSKCC	GRCh37	1	161284210	161284210	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			763	137	515	0	ENST00000367975.2:c.15G>C	p.Leu5Phe	p.L5F	ENST00000367975	NM_003001.3	5	ttG/ttC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629517	187629517	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	95	458	0	ENST00000441802.2:c.1465G>T	p.Asp489Tyr	p.D489Y	ENST00000441802	NM_005245.3	489	Gac/Tac																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004345	150004345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	291	676	0	ENST00000253339.5:c.1880G>T	p.Arg627Met	p.R627M	ENST00000253339		627	aGg/aTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81336639	81336639	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	336	418	0	ENST00000222390.5:c.1583G>T	p.Trp528Leu	p.W528L	ENST00000222390	NM_000601.4	528	tGg/tTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845814	151845814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			139	236	458	0	ENST00000262189.6:c.13198C>T	p.Arg4400Trp	p.R4400W	ENST00000262189	NM_170606.2	4400	Cgg/Tgg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285506	38285506	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1146	215	486	0	ENST00000425967.3:c.647A>C	p.Asn216Thr	p.N216T	ENST00000425967	NM_001174067.1	216	aAc/aCc																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015192	37015192	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			270	87	421	0	ENST00000358127.4:c.213-1G>T		p.X71_splice	ENST00000358127	NM_001280556.1	71																																																																																
FLT1	2321	MSKCC	GRCh37	13	28897059	28897059	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	88	314	0	ENST00000282397.4:c.2821A>G	p.Lys941Glu	p.K941E	ENST00000282397	NM_002019.4	941	Aag/Gag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88690565	88690565	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			195	148	307	0	ENST00000360948.2:c.464+1G>A		p.X155_splice	ENST00000360948	NM_001012338.2	155																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3832771	3832771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			252	171	331	0	ENST00000262367.5:c.1487C>T	p.Pro496Leu	p.P496L	ENST00000262367	NM_004380.2	496	cCc/cTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29556173	29556173	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			131	73	162	0	ENST00000358273.4:c.2540T>G	p.Leu847Arg	p.L847R	ENST00000358273	NM_001042492.2	847	cTt/cGt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934037	39934037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	134	522	2	ENST00000378444.4:c.562C>T	p.Arg188Trp	p.R188W	ENST00000378444	NM_001123385.1	188	Cgg/Tgg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223431	53223431	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			244	98	494	0	ENST00000375401.3:c.3928G>T	p.Glu1310Ter	p.E1310*	ENST00000375401	NM_004187.3	1310	Gag/Tag																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80646037	80646037	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			145	106	245	0	ENST00000286548.4:c.115del	p.Glu39SerfsTer21	p.E39Sfs*21	ENST00000286548	NM_002072.3	39	Gag/ag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	341242	341243	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	120	424	0	ENST00000262320.3:c.2241_2242del	p.Pro748GlyfsTer33	p.P748Gfs*33	ENST00000262320	NM_003502.3	747	gcGCcg/gccg																																																																															
NF1	4763	MSKCC	GRCh37	17	29653027	29653028	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			497	298	613	0	ENST00000358273.4:c.5026_5027del	p.Ala1676SerfsTer5	p.A1676Sfs*5	ENST00000358273	NM_001042492.2	1675	tcCGca/tcca																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609620	81609621	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	187	417	0	ENST00000298171.2:c.1218_1219delinsAA	p.Asn406_Pro407delinsLysThr	p.N406_P407delinsKT	ENST00000298171	NM_000369.2	406	aaCCcg/aaAAcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0001599-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			346	29	228	0	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023312	27023312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001599-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			52	33	30	0	ENST00000324856.7:c.418G>A	p.Ala140Thr	p.A140T	ENST00000324856	NM_006015.4	140	Gcg/Acg																																																																															
ALK	238	MSKCC	GRCh37	2	29443574	29443574	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0001599-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			350	36	193	0	ENST00000389048.3:c.3643C>A	p.Pro1215Thr	p.P1215T	ENST00000389048	NM_004304.4	1215	Ccg/Acg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225422565	225422565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001599-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			349	40	189	0	ENST00000264414.4:c.75G>T	p.Met25Ile	p.M25I	ENST00000264414	NM_003590.4	25	atG/atT																																																																															
KDR	3791	MSKCC	GRCh37	4	55973981	55973981	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0001599-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			492	54	231	0	ENST00000263923.4:c.1335T>A	p.Cys445Ter	p.C445*	ENST00000263923	NM_002253.2	445	tgT/tgA																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459672	149459672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001599-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			531	75	318	0	ENST00000286301.3:c.535G>A	p.Ala179Thr	p.A179T	ENST00000286301	NM_005211.3	179	Gcc/Acc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001245	150001245	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001599-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			710	53	473	0	ENST00000253339.5:c.2359G>C	p.Gly787Arg	p.G787R	ENST00000253339		787	Ggg/Cgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579478	7579478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001599-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			328	36	229	0	ENST00000269305.4:c.209C>T	p.Ala70Val	p.A70V	ENST00000269305	NM_001126112.2	70	gCt/gTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29533309	29533309	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001599-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			477	62	324	0	ENST00000358273.4:c.1312G>T	p.Glu438Ter	p.E438*	ENST00000358273	NM_001042492.2	438	Gaa/Taa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645134	86645134	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0001599-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			348	25	282	0	ENST00000274376.6:c.1206T>A	p.Cys402Ter	p.C402*	ENST00000274376	NM_002890.2	402	tgT/tgA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0001613-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			467	326	408	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241677	55241677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001613-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			706	42	427	1	ENST00000275493.2:c.2125G>A	p.Glu709Lys	p.E709K	ENST00000275493	NM_005228.3	709	Gaa/Aaa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630504	47630504	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001613-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	28	404	0	ENST00000233146.2:c.174C>G	p.Phe58Leu	p.F58L	ENST00000233146	NM_000251.2	58	ttC/ttG																																																																															
CARD11	84433	MSKCC	GRCh37	7	2949706	2949706	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001613-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	36	456	0	ENST00000396946.4:c.3238G>C	p.Glu1080Gln	p.E1080Q	ENST00000396946	NM_032415.4	1080	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001613-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	35	367	0	ENST00000269305.4:c.711G>C	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atC																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027806	48027807	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001625-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			603	48	373	0	ENST00000234420.5:c.2690dup	p.Asn897LysfsTer3	p.N897Kfs*3	ENST00000234420	NM_000179.2	895	aca/acAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0001625-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			468	27	352	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001632-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			821	444	362	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151893024	151893024	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0001632-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			725	370	482	0	ENST00000262189.6:c.4346C>G	p.Ser1449Ter	p.S1449*	ENST00000262189	NM_170606.2	1449	tCa/tGa																																																																															
CDH1	999	MSKCC	GRCh37	16	68835596	68835596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001632-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	783	488	0	ENST00000261769.5:c.187C>T	p.Arg63Ter	p.R63*	ENST00000261769	NM_004360.3	63	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0001724-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	90	796	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098804	178098804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001724-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	201	904	0	ENST00000397062.3:c.241G>A	p.Gly81Ser	p.G81S	ENST00000397062	NM_006164.4	81	Ggt/Agt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628184	187628184	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001724-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			352	129	699	0	ENST00000441802.2:c.2798G>T	p.Arg933Leu	p.R933L	ENST00000441802	NM_005245.3	933	cGt/cTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220717	1220717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0001724-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			129	100	490	0	ENST00000326873.7:c.734+1G>T		p.X245_splice	ENST00000326873	NM_000455.4	245																																																																																
EIF1AX	1964	MSKCC	GRCh37	X	20156717	20156717	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001724-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			151	101	430	2	ENST00000379607.5:c.40A>G	p.Arg14Gly	p.R14G	ENST00000379607	NM_001412.3	14	Agg/Ggg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0001778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			820	181	687	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0001778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			300	174	454	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
ATM	472	MSKCC	GRCh37	11	108114679	108114679	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0001778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	165	317	0	ENST00000278616.4:c.497-1G>C		p.X166_splice	ENST00000278616	NM_000051.3	166																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49427377	49427377	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			680	69	560	0	ENST00000301067.7:c.11111T>G	p.Leu3704Arg	p.L3704R	ENST00000301067	NM_003482.3	3704	cTt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577107	7577107	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0001778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			354	328	684	2	ENST00000269305.4:c.831T>A	p.Cys277Ter	p.C277*	ENST00000269305	NM_001126112.2	277	tgT/tgA																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256748	19256748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			469	26	461	0	ENST00000162023.5:c.965G>A	p.Arg322His	p.R322H	ENST00000162023		322	cGc/cAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931634	39931634	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			563	42	335	0	ENST00000378444.4:c.2965A>C	p.Ser989Arg	p.S989R	ENST00000378444	NM_001123385.1	989	Agt/Cgt																																																																															
ATRX	546	MSKCC	GRCh37	X	76875982	76875982	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	276	375	0	ENST00000373344.5:c.5153G>T	p.Cys1718Phe	p.C1718F	ENST00000373344	NM_000489.3	1718	tGt/tTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001846-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			336	86	142	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187525110	187525110	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001846-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	54	101	0	ENST00000441802.2:c.10570C>G	p.Gln3524Glu	p.Q3524E	ENST00000441802	NM_005245.3	3524	Cag/Gag																																																																															
RB1	5925	MSKCC	GRCh37	13	49030367	49030368	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001846-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			416	120	204	0	ENST00000267163.4:c.1848dupA	p.Gly617ArgfsTer36	p.G617Rfs*36	ENST00000267163	NM_000321.2	614	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			450	174	341	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	137	318	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29533378	29533378	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			297	167	188	0	ENST00000358273.4:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000358273	NM_001042492.2	461	Cga/Tga																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551710	150551710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			197	67	98	0	ENST00000369026.2:c.297C>A	p.Phe99Leu	p.F99L	ENST00000369026	NM_021960.4	99	ttC/ttA																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25471043	25471043	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	170	314	2	ENST00000264709.3:c.718G>T	p.Glu240Ter	p.E240*	ENST00000264709	NM_175629.2	240	Gag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541541	187541541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	51	299	1	ENST00000441802.2:c.6199G>A	p.Val2067Met	p.V2067M	ENST00000441802	NM_005245.3	2067	Gtg/Atg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38952502	38952502	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	80	165	0	ENST00000357387.3:c.2923A>G	p.Ile975Val	p.I975V	ENST00000357387	NM_152756.3	975	Ata/Gta																																																																															
RET	5979	MSKCC	GRCh37	10	43615005	43615005	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	79	275	0	ENST00000355710.3:c.2419G>C	p.Ala807Pro	p.A807P	ENST00000355710	NM_020975.4	807	Gcc/Ccc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008226	29008226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	84	304	0	ENST00000282397.4:c.645G>T	p.Leu215Phe	p.L215F	ENST00000282397	NM_002019.4	215	ttG/ttT																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923390	9923390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			404	59	336	0	ENST00000330684.3:c.1897G>C	p.Val633Leu	p.V633L	ENST00000330684	NM_001134407.1	633	Gta/Cta																																																																															
STK11	6794	MSKCC	GRCh37	19	1220443	1220443	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	121	286	0	ENST00000326873.7:c.536C>A	p.Pro179Gln	p.P179Q	ENST00000326873	NM_000455.4	179	cCg/cAg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602871	10602871	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	144	256	0	ENST00000171111.5:c.707A>T	p.Asp236Val	p.D236V	ENST00000171111	NM_203500.1	236	gAc/gTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141495	11141495	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			358	139	291	0	ENST00000344626.4:c.3472G>C	p.Ala1158Pro	p.A1158P	ENST00000344626	NM_003072.3	1158	Gct/Cct																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276713	15276713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			354	134	302	0	ENST00000263388.2:c.5552G>T	p.Arg1851Leu	p.R1851L	ENST00000263388	NM_000435.2	1851	cGt/cTt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276768	15276768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			321	145	324	0	ENST00000263388.2:c.5497G>T	p.Ala1833Ser	p.A1833S	ENST00000263388	NM_000435.2	1833	Gca/Tca																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561552	9561552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			228	24	191	0	ENST00000353224.5:c.230G>T	p.Cys77Phe	p.C77F	ENST00000353224	NM_177990.2	77	tGc/tTc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513232	44513232	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	37	96	0	ENST00000291552.4:c.703G>C	p.Glu235Gln	p.E235Q	ENST00000291552	NM_006758.2	235	Gaa/Caa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001944-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			891	92	482	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628053	187628053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001944-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			778	99	518	0	ENST00000441802.2:c.2929G>T	p.Asp977Tyr	p.D977Y	ENST00000441802	NM_005245.3	977	Gat/Tat																																																																															
STK11	6794	MSKCC	GRCh37	19	1220371	1220371	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0001944-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			455	67	314	0	ENST00000326873.7:c.465-1G>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10597396	10597396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001944-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			486	57	438	0	ENST00000171111.5:c.1807G>T	p.Gly603Trp	p.G603W	ENST00000171111	NM_203500.1	603	Ggg/Tgg																																																																															
AR	367	MSKCC	GRCh37	X	66937319	66937319	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0001944-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			653	65	453	0	ENST00000374690.3:c.2174-1G>C		p.X725_splice	ENST00000374690	NM_000044.3	725																																																																																
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			700	112	515	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			908	192	473	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11301680	11301680	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			821	65	473	0	ENST00000361445.4:c.1471C>T	p.Arg491Ter	p.R491*	ENST00000361445	NM_004958.3	491	Cga/Tga																																																																															
SDHA	6389	MSKCC	GRCh37	5	224526	224526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	79	221	1	ENST00000264932.6:c.202G>T	p.Gly68Cys	p.G68C	ENST00000264932	NM_004168.2	68	Ggc/Tgc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030326	180030326	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150279372		P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			753	175	528	1	ENST00000261937.6:c.3958C>T	p.Arg1320Trp	p.R1320W	ENST00000261937	NM_182925.4	1320	Cgg/Tgg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680730	30680730	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			804	67	535	0	ENST00000376406.3:c.989A>G	p.Asp330Gly	p.D330G	ENST00000376406	NM_014641.2	330	gAc/gGc																																																																															
SYK	6850	MSKCC	GRCh37	9	93636564	93636564	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			606	66	343	0	ENST00000375746.1:c.994G>T	p.Ala332Ser	p.A332S	ENST00000375746	NM_001174167.1	332	Gca/Tca																																																																															
RET	5979	MSKCC	GRCh37	10	43620407	43620407	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			678	148	373	0	ENST00000355710.3:c.3016G>T	p.Glu1006Ter	p.E1006*	ENST00000355710	NM_020975.4	1006	Gag/Tag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88670436	88670436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			755	75	445	1	ENST00000360948.2:c.1250C>A	p.Pro417His	p.P417H	ENST00000360948	NM_001012338.2	417	cCt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			695	62	457	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15281164	15281164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			571	57	453	0	ENST00000263388.2:c.5092G>T	p.Gly1698Cys	p.G1698C	ENST00000263388	NM_000435.2	1698	Ggc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41408858	41408858	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			841	144	462	0	ENST00000373198.4:c.568A>T	p.Arg190Ter	p.R190*	ENST00000373198	NM_133170.3	190	Aga/Tga																																																																															
WT1	7490	MSKCC	GRCh37	11	32410700	32410700	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			761	50	504	0	ENST00000332351.3:c.1458del	p.Trp486CysfsTer14	p.W486Cfs*14	ENST00000332351	NM_024426.4	486	tgG/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0002028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			291	133	469	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112173538	112173538	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	134	384	2	ENST00000257430.4:c.2247G>T	p.Leu749Phe	p.L749F	ENST00000257430	NM_000038.5	749	ttG/ttT																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720649	89720649	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0002028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	61	88	0	ENST00000371953.3:c.802-2A>C		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																																
SMARCD1	6602	MSKCC	GRCh37	12	50479268	50479268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	103	191	0	ENST00000394963.4:c.116G>A	p.Arg39Gln	p.R39Q	ENST00000394963	NM_003076.4	39	cGa/cAa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39570459	39570459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			797	84	451	0	ENST00000262039.4:c.655G>A	p.Val219Ile	p.V219I	ENST00000262039	NM_002647.2	219	Gtt/Att																																																																															
NF2	4771	MSKCC	GRCh37	22	30057221	30057221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			579	159	451	1	ENST00000338641.4:c.703G>A	p.Gly235Arg	p.G235R	ENST00000338641	NM_000268.3	235	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002032-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			133	98	393	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0002032-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			139	334	306	1	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976745	2976745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002032-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			382	128	502	1	ENST00000396946.4:c.1267C>T	p.Arg423Trp	p.R423W	ENST00000396946	NM_032415.4	423	Cgg/Tgg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230571	46230571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002032-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	150	460	0	ENST00000334344.6:c.820C>T	p.Arg274Ter	p.R274*	ENST00000334344	NM_152641.2	274	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002032-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			177	325	375	0	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																															
AXL	558	MSKCC	GRCh37	19	41748914	41748914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002032-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			238	98	397	0	ENST00000301178.4:c.1439G>A	p.Arg480His	p.R480H	ENST00000301178	NM_021913.4	480	cGt/cAt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183322	56183323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002032-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			428	123	329	0	ENST00000399503.3:c.4232_4233insT	p.Thr1412AspfsTer8	p.T1412Dfs*8	ENST00000399503	NM_005921.1	1411	ggg/ggTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0002033-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			803	99	348	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217245	66217245	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002033-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			740	83	296	0	ENST00000273854.3:c.2370C>G	p.Tyr790Ter	p.Y790*	ENST00000273854	NM_004439.5	790	taC/taG																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032408	10032408	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0002033-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	38	89	0	ENST00000330684.3:c.415G>T	p.Asp139Tyr	p.D139Y	ENST00000330684	NM_001134407.1	139	Gat/Tat																																																																															
STK11	6794	MSKCC	GRCh37	19	1220370	1220370	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0002033-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			753	142	251	0	ENST00000326873.7:c.465-2A>G		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10610243	10610243	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002033-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			983	149	399	0	ENST00000171111.5:c.467T>C	p.Met156Thr	p.M156T	ENST00000171111	NM_203500.1	156	aTg/aCg																																																																															
NF1	4763	MSKCC	GRCh37	17	29557859	29557859	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0002033-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			330	44	131	0	ENST00000358273.4:c.3114del		p.X1038_splice	ENST00000358273	NM_001042492.2	1038																																																																																
APC	324	MSKCC	GRCh37	5	112174217	112174217	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002035-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			268	66	371	0	ENST00000257430.4:c.2926A>T	p.Arg976Ter	p.R976*	ENST00000257430	NM_000038.5	976	Aga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002035-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			108	53	208	0	ENST00000269305.4:c.511del	p.Glu171ArgfsTer3	p.E171Rfs*3	ENST00000269305	NM_001126112.2	171	Gag/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0002036-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	279	476	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002036-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			142	257	475	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38975702	38975702	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002038-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			656	61	337	0	ENST00000357387.3:c.826G>C	p.Asp276His	p.D276H	ENST00000357387	NM_152756.3	276	Gac/Cac																																																																															
TET1	80312	MSKCC	GRCh37	10	70442723	70442723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002038-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			508	68	423	0	ENST00000373644.4:c.5045G>T	p.Ser1682Ile	p.S1682I	ENST00000373644	NM_030625.2	1682	aGc/aTc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434214	121434214	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0002038-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	102	269	0	ENST00000257555.6:c.1105C>G	p.Leu369Val	p.L369V	ENST00000257555		369	Ctg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576863	7576863	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002038-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			511	106	353	0	ENST00000269305.4:c.983del	p.Phe328SerfsTer17	p.F328Sfs*17	ENST00000269305	NM_001126112.2	328	tTc/tc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242470	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC	rs397517096		P-0002038-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	113	347	0	ENST00000275493.2:c.2239_2240delinsCC	p.Leu747Pro	p.L747P	ENST00000275493	NM_005228.3	747	TTa/CCa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28578289	28578289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002408-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			691	151	316	2	ENST00000241453.7:c.2882G>A	p.Arg961His	p.R961H	ENST00000241453	NM_004119.2	961	cGt/cAt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71096159	71096160	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	AG			P-0002443-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			142	63	337	0	ENST00000318789.4:c.597_598delinsCT	p.Leu199_Gln200delinsPheTer	p.L199_Q200delinsF*	ENST00000318789	NM_032682.5	199	ttGCag/ttCTag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247366	71247366	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002443-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	65	304	0	ENST00000318789.4:c.167del	p.Gln56ArgfsTer26	p.Q56Rfs*26	ENST00000318789	NM_032682.5	56	cAg/cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			806	271	235	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643368	52643368	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			885	175	321	0	ENST00000394830.3:c.2528A>T	p.His843Leu	p.H843L	ENST00000394830	NM_018313.4	843	cAt/cTt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468500	89468501	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			515	154	200	0	ENST00000336596.2:c.2034_2035delinsAT	p.Asp678_His679delinsGluTyr	p.D678_H679delinsEY	ENST00000336596	NM_005233.5	678	gaCCac/gaATac																																																																															
KIT	3815	MSKCC	GRCh37	4	55602904	55602904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			549	246	216	0	ENST00000288135.5:c.2614G>A	p.Gly872Arg	p.G872R	ENST00000288135	NM_000222.2	872	Gga/Aga																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143191928	143191928	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			502	215	188	0	ENST00000262992.4:c.504-1G>A		p.X168_splice	ENST00000262992	NM_001101669.1	168																																																																																
CSF1R	1436	MSKCC	GRCh37	5	149433947	149433947	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			503	285	212	0	ENST00000286301.3:c.2701C>A	p.Pro901Thr	p.P901T	ENST00000286301	NM_005211.3	901	Ccc/Acc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8517973	8517973	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			467	279	319	0	ENST00000356435.5:c.1418A>T	p.Asp473Val	p.D473V	ENST00000356435		473	gAc/gTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971173	21971173	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			105	81	58	0	ENST00000304494.5:c.185T>C	p.Leu62Pro	p.L62P	ENST00000304494	NM_000077.4	62	cTg/cCg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346335	73346335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			592	144	245	0	ENST00000377767.4:c.1465G>A	p.Ala489Thr	p.A489T	ENST00000377767	NM_014953.3	489	Gct/Act																																																																															
PALB2	79728	MSKCC	GRCh37	16	23637632	23637632	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs78179744		P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			912	165	406	0	ENST00000261584.4:c.2673C>G	p.Cys891Trp	p.C891W	ENST00000261584	NM_024675.3	891	tgC/tgG																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78811722	78811722	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			664	254	249	0	ENST00000306801.3:c.1137G>T	p.Trp379Cys	p.W379C	ENST00000306801	NM_020761.2	379	tgG/tgT																																																																															
STK11	6794	MSKCC	GRCh37	19	1221995	1221995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	239	211	0	ENST00000326873.7:c.910C>T	p.Arg304Trp	p.R304W	ENST00000326873	NM_000455.4	304	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11100110	11100110	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	220	196	0	ENST00000344626.4:c.1237del	p.Gln413ArgfsTer88	p.Q413Rfs*88	ENST00000344626	NM_003072.3	412	ttC/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			790	296	240	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602564	10602565	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			324	166	192	0	ENST00000171111.5:c.1013_1014delinsTT	p.Ser338Phe	p.S338F	ENST00000171111	NM_203500.1	338	tCG/tTT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0002446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	321	443	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502651	149502651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	62	319	1	ENST00000261799.4:c.2137G>A	p.Ala713Thr	p.A713T	ENST00000261799	NM_002609.3	713	Gcg/Acg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738801	145738801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			503	68	291	0	ENST00000428558.2:c.2264G>A	p.Arg755Gln	p.R755Q	ENST00000428558	NM_004260.3	755	cGg/cAg																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981895	101981895	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	60	402	0	ENST00000282441.5:c.316C>G	p.Arg106Gly	p.R106G	ENST00000282441	NM_001130145.2	106	Cga/Gga																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524597	103524597	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			434	103	476	0	ENST00000355739.4:c.2728C>A	p.His910Asn	p.H910N	ENST00000355739	NM_000123.3	910	Cat/Aat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099920	27099921	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0002446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	147	346	0	ENST00000324856.7:c.3800_3801del	p.Gly1267AlafsTer19	p.G1267Afs*19	ENST00000324856	NM_006015.4	1267	GGg/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7574002	7574022	+	inframe_deletion	In_Frame_Del	DEL	CGGAACATCTCGAAGCGCTCA	CGGAACATCTCGAAGCGCTCA	-			P-0002446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	239	634	0	ENST00000269305.4:c.1005_1025del	p.Arg337_Glu343del	p.R337_E343del	ENST00000269305	NM_001126112.2	335	cgTGAGCGCTTCGAGATGTTCCGa/cga																																																																															
APC	324	MSKCC	GRCh37	5	112174202	112174202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002447-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			98	32	452	0	ENST00000257430.4:c.2911G>A	p.Asp971Asn	p.D971N	ENST00000257430	NM_000038.5	971	Gat/Aat																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552758	106552758	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002447-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			111	28	454	0	ENST00000369096.4:c.723G>C	p.Lys241Asn	p.K241N	ENST00000369096	NM_001198.3	241	aaG/aaC																																																																															
EP300	2033	MSKCC	GRCh37	22	41513558	41513558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002447-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			106	17	332	0	ENST00000263253.7:c.462G>A	p.Met154Ile	p.M154I	ENST00000263253	NM_001429.3	154	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0002451-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			159	192	240	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
RPTOR	57521	MSKCC	GRCh37	17	78681705	78681705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002451-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			622	122	436	0	ENST00000306801.3:c.413G>A	p.Arg138His	p.R138H	ENST00000306801	NM_020761.2	138	cGt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0002451-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			404	214	352	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913500		P-0002453-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	101	403	0	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt																																																																															
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765123636		P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			206	108	176	6	ENST00000369902.3:c.71dup	p.Ala25GlyfsTer23	p.A25Gfs*23	ENST00000369902	NM_016169.3	22	gcc/gCcc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	190	371	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	253	485	1	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			145	240	497	1	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	256	204	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
NF1	4763	MSKCC	GRCh37	17	29552144	29552144	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	273	419	2	ENST00000358273.4:c.1882delT	p.Tyr628ThrfsTer3	p.Y628Tfs*3	ENST00000358273	NM_001042492.2	626	cTt/ct																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149433673	149433673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	203	458	0	ENST00000286301.3:c.2878G>A	p.Ala960Thr	p.A960T	ENST00000286301	NM_005211.3	960	Gcc/Acc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436297	110436299	+	inframe_deletion	In_Frame_Del	DEL	CGG	CGG	-			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			122	45	59	2	ENST00000375856.3:c.2102_2104delCCG	p.Ala701del	p.A701del	ENST00000375856	NM_003749.2	701	gCCGtg/gtg																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			101	55	113	1	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001358	150001358	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	296	562	0	ENST00000253339.5:c.2246A>G	p.His749Arg	p.H749R	ENST00000253339		749	cAt/cGt																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			362	224	454	1	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			175	135	216	2	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			178	113	253	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	195	471	2	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9776561	9776561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	134	360	0	ENST00000377346.4:c.664C>T	p.Arg222Trp	p.R222W	ENST00000377346	NM_005026.3	222	Cgg/Tgg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11298067	11298067	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143201596		P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	201	322	0	ENST00000361445.4:c.2041G>A	p.Glu681Lys	p.E681K	ENST00000361445	NM_004958.3	681	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261372	16261372	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	160	350	0	ENST00000375759.3:c.8637C>G	p.Asn2879Lys	p.N2879K	ENST00000375759	NM_015001.2	2879	aaC/aaG																																																																															
SPEN	23013	MSKCC	GRCh37	1	16265840	16265840	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			336	231	479	0	ENST00000375759.3:c.10913A>G	p.His3638Arg	p.H3638R	ENST00000375759	NM_015001.2	3638	cAc/cGc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798458	45798458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	264	518	2	ENST00000372115.3:c.511C>T	p.Arg171Trp	p.R171W	ENST00000372115	NM_001048171.1	171	Cgg/Tgg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65309779	65309779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			354	232	398	0	ENST00000342505.4:c.2371G>A	p.Glu791Lys	p.E791K	ENST00000342505	NM_002227.2	791	Gag/Aag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464977	120464977	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			98	204	282	0	ENST00000256646.2:c.5095A>G	p.Met1699Val	p.M1699V	ENST00000256646	NM_024408.3	1699	Atg/Gtg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724626	162724626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			281	158	297	0	ENST00000367921.3:c.398G>A	p.Arg133Gln	p.R133Q	ENST00000367921	NM_006182.2	133	cGg/cAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027046	48027046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			341	234	294	0	ENST00000234420.5:c.1924T>C	p.Tyr642His	p.Y642H	ENST00000234420	NM_000179.2	642	Tat/Cat																																																																															
PMS1	5378	MSKCC	GRCh37	2	190738317	190738317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	202	290	0	ENST00000441310.2:c.2569A>G	p.Ile857Val	p.I857V	ENST00000441310	NM_000534.4	857	Ata/Gta																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383999	84383999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150371881		P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	153	242	0	ENST00000321945.7:c.853C>T	p.Arg285Trp	p.R285W	ENST00000321945	NM_139076.2	285	Cgg/Tgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521103	187521103	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs183364307		P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	247	352	0	ENST00000441802.2:c.12052G>A	p.Ala4018Thr	p.A4018T	ENST00000441802	NM_005245.3	4018	Gcc/Acc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755729	57755729	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			333	282	306	1	ENST00000274289.3:c.58C>T	p.Gln20Ter	p.Q20*	ENST00000274289	NM_006622.3	20	Cag/Tag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176662878	176662878	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			340	256	339	0	ENST00000439151.2:c.3853A>G	p.Thr1285Ala	p.T1285A	ENST00000439151	NM_022455.4	1285	Aca/Gca																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289107	33289107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			378	251	325	1	ENST00000374542.5:c.445G>A	p.Ala149Thr	p.A149T	ENST00000374542	NM_001141970.1	149	Gcc/Acc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106536164	106536164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	213	302	2	ENST00000369096.4:c.131C>T	p.Ala44Val	p.A44V	ENST00000369096	NM_001198.3	44	gCg/gTg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117683806	117683806	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	198	371	0	ENST00000368508.3:c.3341A>G	p.Gln1114Arg	p.Q1114R	ENST00000368508	NM_002944.2	1114	cAa/cGa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528720	157528720	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	240	337	0	ENST00000346085.5:c.6445A>G	p.Ile2149Val	p.I2149V	ENST00000346085	NM_020732.3	2149	Ata/Gta																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971238	13971238	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			410	237	398	0	ENST00000405192.2:c.691T>C	p.Tyr231His	p.Y231H	ENST00000405192	NM_001163147.1	231	Tac/Cac																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459530	50459530	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	182	284	0	ENST00000331340.3:c.819A>C	p.Lys273Asn	p.K273N	ENST00000331340	NM_006060.4	273	aaA/aaC																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467849	50467849	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			253	128	283	0	ENST00000331340.3:c.1084A>G	p.Asn362Asp	p.N362D	ENST00000331340	NM_006060.4	362	Aac/Gac																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739581	145739581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	413	298	0	ENST00000428558.2:c.1870G>A	p.Val624Ile	p.V624I	ENST00000428558	NM_004260.3	624	Gtc/Atc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636820	8636820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			405	227	318	0	ENST00000356435.5:c.89C>T	p.Pro30Leu	p.P30L	ENST00000356435		30	cCc/cTc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98268722	98268722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	280	491	0	ENST00000331920.6:c.361C>T	p.Leu121Phe	p.L121F	ENST00000331920	NM_000264.3	121	Ctc/Ttc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104353441	104353441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			293	208	304	2	ENST00000369902.3:c.646G>A	p.Gly216Arg	p.G216R	ENST00000369902	NM_016169.3	216	Ggg/Agg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67201682	67201682	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			354	213	543	0	ENST00000312629.5:c.983T>C	p.Phe328Ser	p.F328S	ENST00000312629	NM_003952.2	328	tTc/tCc																																																																															
EED	8726	MSKCC	GRCh37	11	85979574	85979574	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			458	274	342	0	ENST00000263360.6:c.937C>T	p.Arg313Ter	p.R313*	ENST00000263360	NM_003797.3	313	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374073	118374073	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			369	209	442	0	ENST00000534358.1:c.7466A>C	p.Lys2489Thr	p.K2489T	ENST00000534358	NM_005933.3	2489	aAg/aCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420448	49420448	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			581	83	282	0	ENST00000301067.7:c.15301A>G	p.Thr5101Ala	p.T5101A	ENST00000301067	NM_003482.3	5101	Acc/Gcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432375	49432375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			228	330	326	0	ENST00000301067.7:c.8764C>T	p.Arg2922Trp	p.R2922W	ENST00000301067	NM_003482.3	2922	Cgg/Tgg																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50483736	50483736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			705	266	407	0	ENST00000394963.4:c.841C>T	p.Arg281Trp	p.R281W	ENST00000394963	NM_003076.4	281	Cgg/Tgg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563021	21563021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			221	134	353	2	ENST00000382592.4:c.898G>A	p.Ala300Thr	p.A300T	ENST00000382592	NM_014572.2	300	Gcc/Acc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26978094	26978094	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	313	598	1	ENST00000381527.3:c.1271G>A	p.Arg424His	p.R424H	ENST00000381527	NM_001260.1	424	cGt/cAt																																																																															
MAX	4149	MSKCC	GRCh37	14	65543211	65543211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	629	416	0	ENST00000358664.4:c.466C>T	p.Arg156Trp	p.R156W	ENST00000358664	NM_002382.4	156	Cgg/Tgg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560394	95560394	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			616	47	206	0	ENST00000343455.3:c.5195T>C	p.Leu1732Pro	p.L1732P	ENST00000343455	NM_177438.2	1732	cTg/cCg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680686	88680686	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			278	183	455	0	ENST00000360948.2:c.571A>G	p.Asn191Asp	p.N191D	ENST00000360948	NM_001012338.2	191	Aac/Gac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15943797	15943797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			297	201	345	0	ENST00000268712.3:c.6691C>T	p.Pro2231Ser	p.P2231S	ENST00000268712	NM_006311.3	2231	Cca/Tca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439924	56439924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	131	163	0	ENST00000407977.2:c.668G>A	p.Arg223His	p.R223H	ENST00000407977		223	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5225809	5225809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	138	378	2	ENST00000357368.4:c.2423C>T	p.Thr808Met	p.T808M	ENST00000357368	NM_002850.3	808	aCg/aTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7117273	7117273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	219	468	0	ENST00000302850.5:c.3943G>A	p.Glu1315Lys	p.E1315K	ENST00000302850	NM_000208.2	1315	Gag/Aag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10270347	10270347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	182	392	2	ENST00000340748.4:c.1219C>A	p.Leu407Met	p.L407M	ENST00000340748		407	Ctg/Atg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170792	11170792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	98	284	1	ENST00000344626.4:c.4840C>T	p.Arg1614Trp	p.R1614W	ENST00000344626	NM_003072.3	1614	Cgg/Tgg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281523	15281523	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			190	113	405	0	ENST00000263388.2:c.4850T>C	p.Val1617Ala	p.V1617A	ENST00000263388	NM_000435.2	1617	gTg/gCg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945695	17945695	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			244	144	361	0	ENST00000458235.1:c.2165T>C	p.Val722Ala	p.V722A	ENST00000458235	NM_000215.3	722	gTc/gCc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279911	18279911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			286	158	355	0	ENST00000222254.8:c.1994C>T	p.Thr665Ile	p.T665I	ENST00000222254	NM_005027.3	665	aCc/aTc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31019408	31019408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			369	246	336	0	ENST00000375687.4:c.905G>A	p.Arg302His	p.R302H	ENST00000375687	NM_015338.5	302	cGt/cAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40709541	40709541	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			261	177	573	0	ENST00000373198.4:c.4361T>A	p.Leu1454Gln	p.L1454Q	ENST00000373198	NM_133170.3	1454	cTg/cAg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231812	36231812	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			361	219	312	0	ENST00000300305.3:c.572G>T	p.Arg191Ile	p.R191I	ENST00000300305		191	aGa/aTa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044992	47044992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			85	167	371	1	ENST00000329236.7:c.2084C>T	p.Ala695Val	p.A695V	ENST00000329236	NM_001204466.1	695	gCg/gTg																																																																															
ALK	238	MSKCC	GRCh37	2	30143045	30143045	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			297	147	486	0	ENST00000389048.3:c.481del	p.Ala161ArgfsTer25	p.A161Rfs*25	ENST00000389048	NM_004304.4	161	Gcg/cg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719640	190719640	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	107	244	0	ENST00000441310.2:c.1647del	p.Lys549AsnfsTer4	p.K549Nfs*4	ENST00000441310	NM_000534.4	548	Aaa/aa																																																																															
BARD1	580	MSKCC	GRCh37	2	215645983	215645984	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			385	207	469	0	ENST00000260947.4:c.614dup	p.Gln206AlafsTer8	p.Q206Afs*8	ENST00000260947	NM_000465.2	205	aag/aaAg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643943	52643943	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	178	304	0	ENST00000394830.3:c.1953delA	p.Lys651AsnfsTer5	p.K651Nfs*5	ENST00000394830	NM_018313.4	651	aaA/aa																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664989	138664989	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			77	41	56	0	ENST00000330315.3:c.576del	p.Lys193SerfsTer78	p.K193Sfs*78	ENST00000330315	NM_023067.3	192	ccC/cc																																																																															
BCL6	604	MSKCC	GRCh37	3	187447335	187447335	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			212	173	268	0	ENST00000232014.4:c.858del	p.Ser287GlnfsTer37	p.S287Qfs*37	ENST00000232014	NM_001130845.1	286	ccC/cc																																																																															
TET2	54790	MSKCC	GRCh37	4	106197506	106197506	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	269	503	1	ENST00000380013.4:c.5844del	p.Val1949Ter	p.V1949*	ENST00000380013	NM_001127208.2	1947	Aaa/aa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521299	187521299	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	228	591	1	ENST00000441802.2:c.11856delT	p.Phe3952LeufsTer31	p.F3952Lfs*31	ENST00000441802	NM_005245.3	3952	ttT/tt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542109	187542110	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	195	346	0	ENST00000441802.2:c.5630dup	p.Val1878CysfsTer8	p.V1878Cfs*8	ENST00000441802	NM_005245.3	1877	cct/ccCt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755670	57755670	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			336	243	311	1	ENST00000274289.3:c.117delC	p.Glu40ArgfsTer60	p.E40Rfs*60	ENST00000274289	NM_006622.3	39	ccC/cc																																																																															
APC	324	MSKCC	GRCh37	5	112176345	112176345	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			314	183	253	0	ENST00000257430.4:c.5058delA	p.Lys1686AsnfsTer23	p.K1686Nfs*23	ENST00000257430	NM_000038.5	1685	gAa/ga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099421	157099426	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			231	74	96	1	ENST00000346085.5:c.363_368del	p.Gln130_Gln131del	p.Q130_Q131del	ENST00000346085	NM_020732.3	120	CAGCAA/-																																																																															
PMS2	5395	MSKCC	GRCh37	7	6036958	6036958	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	234	434	0	ENST00000265849.7:c.802del	p.Tyr268ThrfsTer39	p.Y268Tfs*39	ENST00000265849	NM_000535.5	268	Tac/ac																																																																															
TET1	80312	MSKCC	GRCh37	10	70446284	70446284	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	235	545	0	ENST00000373644.4:c.5230del	p.Arg1744GlufsTer18	p.R1744Efs*18	ENST00000373644	NM_030625.2	1742	Aaa/aa																																																																															
NF1	4763	MSKCC	GRCh37	17	29556102	29556103	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			232	138	205	0	ENST00000358273.4:c.2471dup	p.Ser825IlefsTer6	p.S825Ifs*6	ENST00000358273	NM_001042492.2	823	-/G																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532517	63532517	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			241	162	268	0	ENST00000307078.5:c.2062delC	p.Leu688Ter	p.L688*	ENST00000307078	NM_004655.3	688	Ctg/tg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141540	11141541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	178	400	0	ENST00000344626.4:c.3522dup	p.Asp1175Ter	p.D1175*	ENST00000344626	NM_003072.3	1173	att/aTtt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	50	153	0	ENST00000375687.4:c.1933_1934dup	p.Gly646ValfsTer58	p.G646Vfs*58	ENST00000375687	NM_015338.5	642	-/GG																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934127	39934127	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			109	260	554	0	ENST00000378444.4:c.472del	p.Ser158ValfsTer3	p.S158Vfs*3	ENST00000378444	NM_001123385.1	158	Agt/gt																																																																															
MPL	4352	MSKCC	GRCh37	1	43812465	43812465	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			274	116	398	1	ENST00000372470.3:c.1168C>T	p.Arg390Cys	p.R390C	ENST00000372470	NM_005373.2	390	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			439	1070	554	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966995	25966996	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	120	559	1	ENST00000435504.4:c.2210_2211delinsTT	p.Arg737Ile	p.R737I	ENST00000435504		737	aGG/aTT																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096600	178096600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			580	141	449	0	ENST00000397062.3:c.731C>T	p.Pro244Leu	p.P244L	ENST00000397062	NM_006164.4	244	cCa/cTa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212576866	212576866	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			435	105	464	0	ENST00000342788.4:c.1033G>T	p.Ala345Ser	p.A345S	ENST00000342788	NM_005235.2	345	Gct/Tct																																																																															
ATR	545	MSKCC	GRCh37	3	142188333	142188333	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			536	249	633	0	ENST00000350721.4:c.6398T>C	p.Leu2133Ser	p.L2133S	ENST00000350721	NM_001184.3	2133	tTa/tCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187554966	187554966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			471	179	533	0	ENST00000441802.2:c.4195G>T	p.Asp1399Tyr	p.D1399Y	ENST00000441802	NM_005245.3	1399	Gac/Tac																																																																															
TERT	7015	MSKCC	GRCh37	5	1293621	1293621	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	197	389	0	ENST00000310581.5:c.1380G>T	p.Gln460His	p.Q460H	ENST00000310581	NM_198253.2	460	caG/caT																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56170866	56170866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			527	242	453	0	ENST00000399503.3:c.1694G>T	p.Gly565Val	p.G565V	ENST00000399503	NM_005921.1	565	gGa/gTa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468059	50468059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	171	378	0	ENST00000331340.3:c.1294C>A	p.His432Asn	p.H432N	ENST00000331340	NM_006060.4	432	Cac/Aac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945465	151945465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	202	446	1	ENST00000262189.6:c.2054C>T	p.Pro685Leu	p.P685L	ENST00000262189	NM_170606.2	685	cCa/cTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484339	8484339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			764	124	569	1	ENST00000356435.5:c.3193G>T	p.Gly1065Cys	p.G1065C	ENST00000356435		1065	Ggc/Tgc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528777	8528777	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			467	184	394	1	ENST00000356435.5:c.355G>T	p.Asp119Tyr	p.D119Y	ENST00000356435		119	Gat/Tat																																																																															
ATM	472	MSKCC	GRCh37	11	108213985	108213985	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			231	235	482	0	ENST00000278616.4:c.8305T>C	p.Trp2769Arg	p.W2769R	ENST00000278616	NM_000051.3	2769	Tgg/Cgg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527708	103527708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	167	462	0	ENST00000355739.4:c.3016G>C	p.Asp1006His	p.D1006H	ENST00000355739	NM_000123.3	1006	Gat/Cat																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88670428	88670428	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	208	581	0	ENST00000360948.2:c.1258A>T	p.Thr420Ser	p.T420S	ENST00000360948	NM_001012338.2	420	Act/Tct																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99473513	99473513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	86	346	0	ENST00000268035.6:c.2935G>A	p.Glu979Lys	p.E979K	ENST00000268035	NM_000875.3	979	Gag/Aag																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52705201	52705201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	130	601	0	ENST00000322088.6:c.83G>T	p.Arg28Leu	p.R28L	ENST00000322088	NM_014225.5	28	cGc/cTc																																																																															
BTK	695	MSKCC	GRCh37	X	100630232	100630232	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	107	733	0	ENST00000308731.7:c.41C>A	p.Ser14Tyr	p.S14Y	ENST00000308731	NM_000061.2	14	tCc/tAc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123179050	123179050	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	162	706	0	ENST00000218089.9:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000218089	NM_001042749.1	167	Cag/Tag																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561131	9561132	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	205	444	1	ENST00000353224.5:c.650_651insC	p.Trp217CysfsTer9	p.W217Cfs*9	ENST00000353224	NM_177990.2	217	tgg/tgCg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24133945	24133945	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	73	254	0	ENST00000263121.7:c.98del	p.Gly33GlufsTer22	p.G33Efs*22	ENST00000263121	NM_003073.3	32	gtG/gt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			678	224	501	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1064	376	600	1	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1017	356	563	1	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			699	222	434	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	124	189	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1432	138	644	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412375	139412375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	179	274	0	ENST00000277541.6:c.1270G>A	p.Glu424Lys	p.E424K	ENST00000277541	NM_017617.3	424	Gag/Aag																																																																															
ALK	238	MSKCC	GRCh37	2	29474110	29474110	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			579	212	403	0	ENST00000389048.3:c.2065G>T	p.Gly689Trp	p.G689W	ENST00000389048	NM_004304.4	689	Ggg/Tgg																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165831	118165831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			655	225	343	0	ENST00000369448.3:c.341G>A	p.Cys114Tyr	p.C114Y	ENST00000369448	NM_017709.3	114	tGt/tAt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724560	162724560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			843	294	427	0	ENST00000367921.3:c.332G>A	p.Gly111Asp	p.G111D	ENST00000367921	NM_006182.2	111	gGc/gAc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175956168	175956168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1073	118	595	0	ENST00000367669.3:c.2044A>G	p.Thr682Ala	p.T682A	ENST00000367669	NM_022457.5	682	Aca/Gca																																																																															
CDC73	79577	MSKCC	GRCh37	1	193104571	193104571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			919	319	478	0	ENST00000367435.3:c.358C>T	p.Arg120Ter	p.R120*	ENST00000367435	NM_024529.4	120	Cga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212293184	212293184	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			824	238	386	0	ENST00000342788.4:c.2668G>T	p.Glu890Ter	p.E890*	ENST00000342788	NM_005235.2	890	Gag/Tag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662389	227662389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			482	130	249	0	ENST00000305123.5:c.1066G>A	p.Ala356Thr	p.A356T	ENST00000305123	NM_005544.2	356	Gcc/Acc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119582380	119582380	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			814	107	409	0	ENST00000316626.5:c.1021C>T	p.Arg341Ter	p.R341*	ENST00000316626		341	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549916	187549916	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			650	215	291	0	ENST00000441802.2:c.4325T>C	p.Val1442Ala	p.V1442A	ENST00000441802	NM_005245.3	1442	gTa/gCa																																																																															
APC	324	MSKCC	GRCh37	5	112177725	112177725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			736	49	284	0	ENST00000257430.4:c.6434G>A	p.Gly2145Glu	p.G2145E	ENST00000257430	NM_000038.5	2145	gGa/gAa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435645	149435645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			836	302	477	0	ENST00000286301.3:c.2498C>T	p.Thr833Met	p.T833M	ENST00000286301	NM_005211.3	833	aCg/aTg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449504	149449504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			803	282	415	0	ENST00000286301.3:c.1442A>G	p.Gln481Arg	p.Q481R	ENST00000286301	NM_005211.3	481	cAa/cGa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515229	149515229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			860	270	476	0	ENST00000261799.4:c.253C>T	p.Leu85Phe	p.L85F	ENST00000261799	NM_002609.3	85	Ctc/Ttc																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158662	26158662	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			58	34	24	0	ENST00000289316.2:c.265A>G	p.Thr89Ala	p.T89A	ENST00000289316	NM_138720.2	89	Acc/Gcc																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015133	37015133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			928	251	614	0	ENST00000358127.4:c.271G>A	p.Ala91Thr	p.A91T	ENST00000358127	NM_001280556.1	91	Gcc/Acc																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80646042	80646042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	122	210	1	ENST00000286548.4:c.110G>A	p.Arg37His	p.R37H	ENST00000286548	NM_002072.3	37	cGc/cAc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249983	110249983	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			390	120	227	0	ENST00000374672.4:c.692T>A	p.Leu231Gln	p.L231Q	ENST00000374672	NM_004235.4	231	cTg/cAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413964	139413964	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			917	372	518	0	ENST00000277541.6:c.796T>G	p.Cys266Gly	p.C266G	ENST00000277541	NM_017617.3	266	Tgc/Ggc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123247618	123247618	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			866	268	486	0	ENST00000358487.5:c.1873C>T	p.Arg625Ter	p.R625*	ENST00000358487	NM_000141.4	625	Cga/Tga																																																																															
POLE	5426	MSKCC	GRCh37	12	133202788	133202788	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201165149		P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			985	240	443	0	ENST00000320574.5:c.6446G>A	p.Arg2149His	p.R2149H	ENST00000320574	NM_006231.2	2149	cGc/cAc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337696	73337696	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			958	316	505	0	ENST00000377767.4:c.2020G>T	p.Val674Phe	p.V674F	ENST00000377767	NM_014953.3	674	Gtt/Ttt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457322	67457322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1068	132	436	0	ENST00000327367.4:c.296G>A	p.Ser99Asn	p.S99N	ENST00000327367	NM_005902.3	99	aGc/aAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129668	2129668	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			670	256	427	0	ENST00000219476.3:c.3395C>T	p.Ser1132Leu	p.S1132L	ENST00000219476	NM_000548.3	1132	tCg/tTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68849631	68849631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			830	320	508	0	ENST00000261769.5:c.1534G>A	p.Glu512Lys	p.E512K	ENST00000261769	NM_004360.3	512	Gag/Aag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15960949	15960949	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199804512		P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			790	295	391	0	ENST00000268712.3:c.6271A>G	p.Thr2091Ala	p.T2091A	ENST00000268712	NM_006311.3	2091	Aca/Gca																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78704462	78704462	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			688	197	392	0	ENST00000306801.3:c.610A>G	p.Lys204Glu	p.K204E	ENST00000306801	NM_020761.2	204	Aag/Gag																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375038	45375038	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			540	382	320	0	ENST00000262160.6:c.805T>C	p.Ser269Pro	p.S269P	ENST00000262160	NM_005901.5	269	Tca/Cca																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226989	2226989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			469	192	261	0	ENST00000398665.3:c.4469G>A	p.Gly1490Asp	p.G1490D	ENST00000398665	NM_032482.2	1490	gGc/gAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5216740	5216740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			808	279	525	0	ENST00000357368.4:c.4087C>T	p.His1363Tyr	p.H1363Y	ENST00000357368	NM_002850.3	1363	Cac/Tac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145644	11145644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			562	206	310	0	ENST00000344626.4:c.4006C>T	p.Arg1336Cys	p.R1336C	ENST00000344626	NM_003072.3	1336	Cgc/Tgc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152065	11152065	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			631	191	329	0	ENST00000344626.4:c.4253A>G	p.Asp1418Gly	p.D1418G	ENST00000344626	NM_003072.3	1418	gAc/gGc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276202	15276202	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			755	254	497	0	ENST00000263388.2:c.5792A>T	p.Asp1931Val	p.D1931V	ENST00000263388	NM_000435.2	1931	gAt/gTt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302456	15302456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			688	281	444	0	ENST00000263388.2:c.815C>T	p.Thr272Met	p.T272M	ENST00000263388	NM_000435.2	272	aCg/aTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42795716	42795716	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			955	317	587	1	ENST00000575354.2:c.2705C>A	p.Ser902Ter	p.S902*	ENST00000575354	NM_015125.3	902	tCa/tAa																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855603	45855603	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			621	233	400	0	ENST00000391945.4:c.2054C>G	p.Ala685Gly	p.A685G	ENST00000391945	NM_000400.3	685	gCc/gGc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57478776	57478776	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			693	216	327	0	ENST00000371085.3:c.362A>G	p.Asn121Ser	p.N121S	ENST00000371085	NM_000516.4	121	aAc/aGc																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655447	45655447	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			368	119	190	0	ENST00000407780.3:c.407-2A>G		p.X136_splice	ENST00000407780	NM_001283052.1	136																																																																																
RFWD2	64326	MSKCC	GRCh37	1	176118141	176118142	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CT			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			747	262	433	0	ENST00000367669.3:c.830_831dup	p.Gln278SerfsTer10	p.Q278Sfs*10	ENST00000367669	NM_022457.5	277	-/AG																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403253	213403254	+	frameshift_variant,start_lost,start_retained_variant	Frame_Shift_Ins	INS	-	-	T			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			859	283	503	0	ENST00000342788.4:c.1dup	p.Met1?	p.M1?	ENST00000342788	NM_005235.2	1	atg/aAtg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			623	186	314	1	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056076	26056076	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			793	266	357	0	ENST00000343677.2:c.581del	p.Lys194SerfsTer?	p.K194Sfs*?	ENST00000343677	NM_005319.3	194	aAg/ag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636729	8636729	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			617	213	383	0	ENST00000356435.5:c.180del	p.Gly61GlufsTer11	p.G61Efs*11	ENST00000356435		60	aaA/aa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209616	98209617	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761353734		P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	120	179	0	ENST00000331920.6:c.3921dup	p.Arg1308GlnfsTer17	p.R1308Qfs*17	ENST00000331920	NM_000264.3	1307	-/C																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244454	46244454	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			991	595	548	0	ENST00000334344.6:c.2552del	p.Pro851HisfsTer4	p.P851Hfs*4	ENST00000334344	NM_152641.2	850	Ccc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420204	49420204	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			936	252	406	0	ENST00000301067.7:c.15545del	p.Gly5182AlafsTer61	p.G5182Afs*61	ENST00000301067	NM_003482.3	5182	gGc/gc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67459125	67459125	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1044	375	583	0	ENST00000327367.4:c.545del	p.Pro182LeufsTer4	p.P182Lfs*4	ENST00000327367	NM_005902.3	181	Ccc/cc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3832688	3832688	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			692	273	383	2	ENST00000262367.5:c.1570delC	p.Leu524TrpfsTer6	p.L524Wfs*6	ENST00000262367	NM_004380.2	524	Ctg/tg																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349090	11349090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	112	154	0	ENST00000332029.2:c.246del	p.Leu84Ter	p.L84*	ENST00000332029	NM_003745.1	82	ggG/gg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2223376	2223376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			932	354	560	3	ENST00000398665.3:c.3492del	p.Val1165CysfsTer8	p.V1165Cfs*8	ENST00000398665	NM_032482.2	1163	Ccc/cc																																																																															
ATRX	546	MSKCC	GRCh37	X	76938173	76938174	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1218	292	755	0	ENST00000373344.5:c.2574dup	p.Gly859ArgfsTer4	p.G859Rfs*4	ENST00000373344	NM_000489.3	858	-/A																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0002473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			354	82	170	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
TET2	54790	MSKCC	GRCh37	4	106156825	106156825	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			564	31	269	0	ENST00000380013.4:c.1726G>T	p.Glu576Ter	p.E576*	ENST00000380013	NM_001127208.2	576	Gaa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056280	27056281	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	55	184	0	ENST00000324856.7:c.1280dup	p.Gln428AlafsTer195	p.Q428Afs*195	ENST00000324856	NM_006015.4	426	acc/aCcc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111540	8111541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0002473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	189	268	0	ENST00000346208.3:c.1029_1030dup	p.Tyr344SerfsTer12	p.Y344Sfs*12	ENST00000346208		342	-/CT																																																																															
CBFB	865	MSKCC	GRCh37	16	67063715	67063717	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TCG	TCG	-			P-0002473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			110	106	108	0	ENST00000412916.2:c.165_165+2del		p.X55_splice	ENST00000412916		55																																																																																
NF1	4763	MSKCC	GRCh37	17	29654857	29654857	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0002473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			203	132	155	0	ENST00000358273.4:c.5609+1del		p.R1870fs	ENST00000358273	NM_001042492.2	1870	cGg/cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			643	295	466	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0002475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			515	295	318	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455075	50455075	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			587	301	330	0	ENST00000331340.3:c.622C>T	p.Arg208Ter	p.R208*	ENST00000331340	NM_006060.4	208	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0002475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	232	378	3	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118339539	118339539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1005	106	455	0	ENST00000534358.1:c.482G>T	p.Ser161Ile	p.S161I	ENST00000534358	NM_005933.3	161	aGt/aTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	252	425	0	ENST00000342988.3:c.1067C>A	p.Pro356His	p.P356H	ENST00000342988	NM_005359.5	356	cCt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593405	48593405	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			436	14	291	0	ENST00000342988.3:c.1156G>C	p.Gly386Arg	p.G386R	ENST00000342988	NM_005359.5	386	Ggt/Cgt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141502	11141502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			507	328	367	0	ENST00000344626.4:c.3479G>A	p.Gly1160Glu	p.G1160E	ENST00000344626	NM_003072.3	1160	gGg/gAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0002475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			587	353	468	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0002478-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			216	160	320	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685305	89685305	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002478-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			596	176	212	0	ENST00000371953.3:c.200T>C	p.Ile67Thr	p.I67T	ENST00000371953	NM_000314.4	67	aTa/aCa																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518562	69518562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002478-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			150	52	112	0	ENST00000294312.3:c.83C>T	p.Ser28Leu	p.S28L	ENST00000294312	NM_005117.2	28	tCg/tTg																																																																															
RARA	5914	MSKCC	GRCh37	17	38510710	38510713	+	missense_variant	Missense_Mutation	ONP	GATG	GATG	AATT			P-0002478-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			725	145	207	0	ENST00000254066.5:c.964_967delinsAATT	p.Asp322_Asp323delinsAsnTyr	p.D322_D323delinsNY	ENST00000254066	NM_000964.3	322	GATGat/AATTat																																																																															
RARA	5914	MSKCC	GRCh37	17	38511523	38511523	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002478-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			645	123	168	0	ENST00000254066.5:c.1021G>T	p.Asp341Tyr	p.D341Y	ENST00000254066	NM_000964.3	341	Gac/Tac																																																																															
RARA	5914	MSKCC	GRCh37	17	38511538	38511538	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002478-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			733	130	196	0	ENST00000254066.5:c.1036G>C	p.Asp346His	p.D346H	ENST00000254066	NM_000964.3	346	Gac/Cac																																																																															
CDH1	999	MSKCC	GRCh37	16	68849425	68849426	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002478-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	138	341	0	ENST00000261769.5:c.1332dup	p.Glu445Ter	p.E445*	ENST00000261769	NM_004360.3	443	gat/gaTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	107	374	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			502	37	390	0	ENST00000269305.4:c.467G>A	p.Arg156His	p.R156H	ENST00000269305	NM_001126112.2	156	cGc/cAc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683196	88683197	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	48	211	0	ENST00000372037.3:c.1407dup	p.Met470TyrfsTer3	p.M470Yfs*3	ENST00000372037	NM_004329.2	469	gat/gaTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0002488-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	447	318	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0002488-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			107	503	436	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0002488-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			73	587	354	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002488-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	179	365	1	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157192784	157192784	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0002488-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	221	400	0	ENST00000346085.5:c.1774T>G	p.Leu592Val	p.L592V	ENST00000346085	NM_020732.3	592	Ttg/Gtg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120226	70120226	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002488-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			100	561	314	1	ENST00000245479.2:c.1228C>T	p.Gln410Ter	p.Q410*	ENST00000245479	NM_000346.3	410	Cag/Tag																																																																															
GNA11	2767	MSKCC	GRCh37	19	3119325	3119325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002488-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			341	245	366	0	ENST00000078429.4:c.857C>T	p.Ser286Leu	p.S286L	ENST00000078429	NM_002067.2	286	tCg/tTg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31374390	31374390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002488-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			888	229	399	0	ENST00000328111.2:c.389G>A	p.Arg130His	p.R130H	ENST00000328111	NM_006892.3	130	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175068	112175069	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0002488-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			317	167	355	0	ENST00000257430.4:c.3778_3779del	p.Gln1260AspfsTer15	p.Q1260Dfs*15	ENST00000257430	NM_000038.5	1259	atACag/atag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0002499-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			606	94	428	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460354	149460354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002499-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	43	350	1	ENST00000286301.3:c.283G>A	p.Ala95Thr	p.A95T	ENST00000286301	NM_005211.3	95	Gcc/Acc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37676341	37676341	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0002499-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			679	71	412	0	ENST00000447079.4:c.3095+1G>A		p.X1032_splice	ENST00000447079	NM_015083.1	1032																																																																																
PDGFRA	5156	MSKCC	GRCh37	4	55141006	55141006	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0002514-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			106	33	408	0	ENST00000257290.5:c.1654-2A>G		p.X552_splice	ENST00000257290	NM_006206.4	552																																																																																
RPTOR	57521	MSKCC	GRCh37	17	78933971	78933971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002514-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			45	23	403	0	ENST00000306801.3:c.3571C>T	p.Arg1191Cys	p.R1191C	ENST00000306801	NM_020761.2	1191	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574011	7574012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGAAGCGCTCA			P-0002514-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			84	23	425	0	ENST00000269305.4:c.1005_1015dup	p.Glu339ValfsTer10	p.E339Vfs*10	ENST00000269305	NM_001126112.2	339	gag/gTGAGCGCTTCGag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002531-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			669	114	597	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002542-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			369	12	216	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002542-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			798	56	449	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002548-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1034	97	475	0	ENST00000369535.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caT																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143326410	143326410	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002548-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			802	69	388	0	ENST00000262992.4:c.204C>G	p.Ile68Met	p.I68M	ENST00000262992	NM_001101669.1	68	atC/atG																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001347	150001347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002548-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1077	94	614	0	ENST00000253339.5:c.2257G>A	p.Glu753Lys	p.E753K	ENST00000253339		753	Gag/Aag																																																																															
RET	5979	MSKCC	GRCh37	10	43615101	43615101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002548-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			851	72	416	0	ENST00000355710.3:c.2515G>A	p.Asp839Asn	p.D839N	ENST00000355710	NM_020975.4	839	Gac/Aac																																																																															
CDH1	999	MSKCC	GRCh37	16	68835584	68835584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002548-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			782	79	421	0	ENST00000261769.5:c.175G>A	p.Asp59Asn	p.D59N	ENST00000261769	NM_004360.3	59	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002548-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			762	84	322	0	ENST00000269305.4:c.451C>G	p.Pro151Ala	p.P151A	ENST00000269305	NM_001126112.2	151	Ccc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002548-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			775	70	336	0	ENST00000269305.4:c.438G>C	p.Trp146Cys	p.W146C	ENST00000269305	NM_001126112.2	146	tgG/tgC																																																																															
STK11	6794	MSKCC	GRCh37	19	1222986	1222986	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0002548-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	95	222	0	ENST00000326873.7:c.923G>T	p.Trp308Leu	p.W308L	ENST00000326873	NM_000455.4	308	tGg/tTg																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20152121	20152121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002548-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			549	99	310	0	ENST00000379607.5:c.209G>T	p.Trp70Leu	p.W70L	ENST00000379607	NM_001412.3	70	tGg/tTg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098951	178098953	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0002548-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			901	66	426	0	ENST00000397062.3:c.92_94del	p.Gly31del	p.G31del	ENST00000397062	NM_006164.4	31	gGAGta/gta																																																																															
MPL	4352	MSKCC	GRCh37	1	43803850	43803850	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			631	78	337	0	ENST00000372470.3:c.160G>T	p.Glu54Ter	p.E54*	ENST00000372470	NM_005373.2	54	Gag/Tag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270189	66270189	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	61	332	0	ENST00000273854.3:c.1693G>T	p.Ala565Ser	p.A565S	ENST00000273854	NM_004439.5	565	Gca/Tca																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170233	32170233	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			581	75	286	0	ENST00000375023.3:c.3375C>A	p.Cys1125Ter	p.C1125*	ENST00000375023	NM_004557.3	1125	tgC/tgA																																																																															
CARD11	84433	MSKCC	GRCh37	7	2954915	2954915	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			631	334	357	0	ENST00000396946.4:c.2795G>T	p.Arg932Leu	p.R932L	ENST00000396946	NM_032415.4	932	cGg/cTg																																																																															
ATM	472	MSKCC	GRCh37	11	108170461	108170462	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			632	139	376	1	ENST00000278616.4:c.5026_5027delinsTT	p.Gly1676Leu	p.G1676L	ENST00000278616	NM_000051.3	1676	GGa/TTa																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012483	29012483	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	53	299	0	ENST00000282397.4:c.389-1G>C		p.X130_splice	ENST00000282397	NM_002019.4	130																																																																																
DICER1	23405	MSKCC	GRCh37	14	95562971	95562971	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			560	90	449	0	ENST00000343455.3:c.4286G>T	p.Trp1429Leu	p.W1429L	ENST00000343455	NM_177438.2	1429	tGg/tTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95566234	95566234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			505	84	353	0	ENST00000343455.3:c.4089G>T	p.Lys1363Asn	p.K1363N	ENST00000343455	NM_177438.2	1363	aaG/aaT																																																																															
TSC2	7249	MSKCC	GRCh37	16	2125848	2125848	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			697	211	427	0	ENST00000219476.3:c.2594A>G	p.Tyr865Cys	p.Y865C	ENST00000219476	NM_000548.3	865	tAt/tGt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900342	3900342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			801	343	404	0	ENST00000262367.5:c.754G>T	p.Gly252Cys	p.G252C	ENST00000262367	NM_004380.2	252	Ggt/Tgt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916159	9916159	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			723	72	442	0	ENST00000330684.3:c.2130G>T	p.Gln710His	p.Q710H	ENST00000330684	NM_001134407.1	710	caG/caT																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763323	59763323	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			599	191	514	0	ENST00000259008.2:c.2779A>G	p.Ser927Gly	p.S927G	ENST00000259008	NM_032043.2	927	Agt/Ggt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	85	453	0	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955145	17955145	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			513	84	321	0	ENST00000458235.1:c.82G>T	p.Val28Leu	p.V28L	ENST00000458235	NM_000215.3	28	Gtg/Ttg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714370	40714370	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	73	286	0	ENST00000373198.4:c.4027C>T	p.Arg1343Trp	p.R1343W	ENST00000373198	NM_133170.3	1343	Cgg/Tgg																																																																															
ERG	2078	MSKCC	GRCh37	21	39795436	39795436	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			621	136	392	0	ENST00000288319.7:c.284del	p.Gly95AlafsTer8	p.G95Afs*8	ENST00000288319	NM_182918.3	95	gGc/gc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0002557-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			647	99	300	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0002557-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			628	28	368	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28623855	28623855	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002557-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			736	60	389	0	ENST00000241453.7:c.799C>A	p.Pro267Thr	p.P267T	ENST00000241453	NM_004119.2	267	Ccc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002559-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			587	227	431	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			382	113	435	0	ENST00000269305.4:c.808T>G	p.Phe270Val	p.F270V	ENST00000269305	NM_001126112.2	270	Ttt/Gtt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775780	9775780	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			330	25	263	0	ENST00000377346.4:c.323G>T	p.Arg108Leu	p.R108L	ENST00000377346	NM_005026.3	108	cGc/cTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255709	16255709	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	28	208	0	ENST00000375759.3:c.2974A>T	p.Asn992Tyr	p.N992Y	ENST00000375759	NM_015001.2	992	Aat/Tat																																																																															
ALK	238	MSKCC	GRCh37	2	30143226	30143226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	33	175	0	ENST00000389048.3:c.300G>T	p.Arg100Ser	p.R100S	ENST00000389048	NM_004304.4	100	agG/agT																																																																															
XPO1	7514	MSKCC	GRCh37	2	61708412	61708412	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	34	319	1	ENST00000401558.2:c.2977C>G	p.Gln993Glu	p.Q993E	ENST00000401558	NM_003400.3	993	Caa/Gaa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61729416	61729416	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			646	38	425	0	ENST00000401558.2:c.331A>G	p.Ile111Val	p.I111V	ENST00000401558	NM_003400.3	111	Atc/Gtc																																																																															
CASP8	841	MSKCC	GRCh37	2	202131354	202131354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	28	277	0	ENST00000358485.4:c.322C>T	p.Gln108Ter	p.Q108*	ENST00000358485	NM_001080125.1	108	Cag/Tag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212286731	212286731	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			377	62	257	0	ENST00000342788.4:c.2964+1G>T		p.X988_splice	ENST00000342788	NM_005235.2	988																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212295801	212295801	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			473	68	374	0	ENST00000342788.4:c.2512C>T	p.Arg838Ter	p.R838*	ENST00000342788	NM_005235.2	838	Cga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488692	212488692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			565	89	354	0	ENST00000342788.4:c.2157G>T	p.Lys719Asn	p.K719N	ENST00000342788	NM_005235.2	719	aaG/aaT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212587173	212587173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			549	89	396	0	ENST00000342788.4:c.828G>T	p.Glu276Asp	p.E276D	ENST00000342788	NM_005235.2	276	gaG/gaT																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715714	30715714	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			281	63	273	0	ENST00000359013.4:c.1447A>T	p.Thr483Ser	p.T483S	ENST00000359013	NM_001024847.2	483	Aca/Tca																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72897455	72897455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	33	291	0	ENST00000325599.8:c.37G>C	p.Asp13His	p.D13H	ENST00000325599	NM_018130.2	13	Gac/Cac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89457269	89457269	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			387	81	294	0	ENST00000336596.2:c.1750G>T	p.Gly584Cys	p.G584C	ENST00000336596	NM_005233.5	584	Ggc/Tgc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499382	89499382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	88	267	0	ENST00000336596.2:c.2552C>A	p.Ala851Asp	p.A851D	ENST00000336596	NM_005233.5	851	gCt/gAt																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664694	138664694	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			35	14	16	0	ENST00000330315.3:c.871C>A	p.His291Asn	p.H291N	ENST00000330315	NM_023067.3	291	Cac/Aac																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665244	138665244	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			471	46	477	0	ENST00000330315.3:c.321C>G	p.Ser107Arg	p.S107R	ENST00000330315	NM_023067.3	107	agC/agG																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007344	143007344	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			439	40	336	0	ENST00000262992.4:c.2440C>G	p.Gln814Glu	p.Q814E	ENST00000262992	NM_001101669.1	814	Caa/Gaa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449582	149449582	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			312	68	373	0	ENST00000286301.3:c.1364C>A	p.Pro455His	p.P455H	ENST00000286301	NM_005211.3	455	cCt/cAt																																																																															
NPM1	4869	MSKCC	GRCh37	5	170818789	170818789	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	66	225	0	ENST00000296930.5:c.338G>T	p.Gly113Val	p.G113V	ENST00000296930	NM_002520.6	113	gGa/gTa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176719036	176719036	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	151	303	0	ENST00000439151.2:c.6340A>T	p.Thr2114Ser	p.T2114S	ENST00000439151	NM_022455.4	2114	Aca/Tca																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790898	89790898	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	24	225	0	ENST00000336032.3:c.285G>C	p.Lys95Asn	p.K95N	ENST00000336032	NM_006813.2	95	aaG/aaC																																																																															
PMS2	5395	MSKCC	GRCh37	7	6029549	6029549	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			646	101	391	0	ENST00000265849.7:c.1026A>T	p.Gln342His	p.Q342H	ENST00000265849	NM_000535.5	342	caA/caT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509227	106509227	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	118	348	0	ENST00000359195.3:c.1221G>C	p.Glu407Asp	p.E407D	ENST00000359195	NM_002649.2	407	gaG/gaC																																																																															
EZH2	2146	MSKCC	GRCh37	7	148516738	148516738	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	26	270	0	ENST00000320356.2:c.949G>A	p.Glu317Lys	p.E317K	ENST00000320356	NM_004456.4	317	Gaa/Aaa																																																																															
EZH2	2146	MSKCC	GRCh37	7	148529808	148529808	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	114	342	0	ENST00000320356.2:c.281A>G	p.Gln94Arg	p.Q94R	ENST00000320356	NM_004456.4	94	cAa/cGa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836311	151836311	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	31	260	0	ENST00000262189.6:c.14494G>T	p.Asp4832Tyr	p.D4832Y	ENST00000262189	NM_170606.2	4832	Gac/Tac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874784	151874784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			262	111	289	0	ENST00000262189.6:c.7754C>T	p.Ser2585Phe	p.S2585F	ENST00000262189	NM_170606.2	2585	tCt/tTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879178	151879178	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	118	431	0	ENST00000262189.6:c.5767G>T	p.Val1923Leu	p.V1923L	ENST00000262189	NM_170606.2	1923	Gtg/Ttg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275466	38275466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			379	93	409	0	ENST00000425967.3:c.1567G>T	p.Val523Leu	p.V523L	ENST00000425967	NM_001174067.1	523	Gtg/Ttg																																																																															
NBN	4683	MSKCC	GRCh37	8	90958472	90958472	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			409	68	308	0	ENST00000265433.3:c.1966T>A	p.Leu656Met	p.L656M	ENST00000265433	NM_002485.4	656	Ttg/Atg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069158	5069158	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			409	41	360	0	ENST00000381652.3:c.1463C>G	p.Ser488Ter	p.S488*	ENST00000381652	NM_004972.3	488	tCa/tGa																																																																															
TET1	80312	MSKCC	GRCh37	10	70450613	70450613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			542	45	518	1	ENST00000373644.4:c.5453C>T	p.Pro1818Leu	p.P1818L	ENST00000373644	NM_030625.2	1818	cCc/cTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89725091	89725091	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			175	20	175	1	ENST00000371953.3:c.1074G>T	p.Glu358Asp	p.E358D	ENST00000371953	NM_000314.4	358	gaG/gaT																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741765	17741765	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	60	316	0	ENST00000250003.3:c.436A>G	p.Lys146Glu	p.K146E	ENST00000250003	NM_002478.4	146	Aag/Gag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344222	118344222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			368	31	274	0	ENST00000534358.1:c.2348C>T	p.Ser783Phe	p.S783F	ENST00000534358	NM_005933.3	783	tCt/tTt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246437	46246437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	82	413	0	ENST00000334344.6:c.4531G>A	p.Glu1511Lys	p.E1511K	ENST00000334344	NM_152641.2	1511	Gaa/Aaa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246473	46246473	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			523	73	374	0	ENST00000334344.6:c.4567G>C	p.Asp1523His	p.D1523H	ENST00000334344	NM_152641.2	1523	Gat/Cat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432521	49432521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	116	311	0	ENST00000301067.7:c.8618G>T	p.Gly2873Val	p.G2873V	ENST00000301067	NM_003482.3	2873	gGt/gTt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557681	21557681	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	109	482	0	ENST00000382592.4:c.2164G>T	p.Glu722Ter	p.E722*	ENST00000382592	NM_014572.2	722	Gag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32915256	32915256	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			370	89	278	2	ENST00000380152.3:c.6764C>A	p.Thr2255Lys	p.T2255K	ENST00000380152		2255	aCa/aAa																																																																															
AKT1	207	MSKCC	GRCh37	14	105237181	105237181	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			296	51	281	0	ENST00000349310.3:c.1264A>C	p.Ser422Arg	p.S422R	ENST00000349310	NM_001014432.1	422	Agc/Cgc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031852	10031852	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	35	278	0	ENST00000330684.3:c.971T>A	p.Met324Lys	p.M324K	ENST00000330684	NM_001134407.1	324	aTg/aAg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646639	23646639	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	64	244	0	ENST00000261584.4:c.1228G>T	p.Val410Phe	p.V410F	ENST00000261584	NM_024675.3	410	Gtt/Ttt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89882377	89882377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			446	35	407	1	ENST00000389301.3:c.97G>A	p.Glu33Lys	p.E33K	ENST00000389301	NM_000135.2	33	Gaa/Aaa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602932	10602932	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			277	90	291	0	ENST00000171111.5:c.646A>T	p.Lys216Ter	p.K216*	ENST00000171111	NM_203500.1	216	Aag/Tag																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31386335	31386335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	41	375	0	ENST00000328111.2:c.1560G>T	p.Glu520Asp	p.E520D	ENST00000328111	NM_006892.3	520	gaG/gaT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306625	41306625	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			411	26	354	0	ENST00000373198.4:c.1034A>G	p.Tyr345Cys	p.Y345C	ENST00000373198	NM_133170.3	345	tAt/tGt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419972	41419972	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			456	36	389	0	ENST00000373198.4:c.349C>A	p.Pro117Thr	p.P117T	ENST00000373198	NM_133170.3	117	Cca/Aca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419987	41419987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	28	383	0	ENST00000373198.4:c.334C>A	p.Arg112Ser	p.R112S	ENST00000373198	NM_133170.3	112	Cgt/Agt																																																																															
ARAF	369	MSKCC	GRCh37	X	47422699	47422699	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	26	372	0	ENST00000377045.4:c.171C>G	p.Asp57Glu	p.D57E	ENST00000377045	NM_001654.4	57	gaC/gaG																																																																															
ARAF	369	MSKCC	GRCh37	X	47430759	47430759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			474	26	460	0	ENST00000377045.4:c.1724C>A	p.Pro575His	p.P575H	ENST00000377045	NM_001654.4	575	cCc/cAc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239994	53239995	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	76	450	0	ENST00000375401.3:c.1446_1447delinsTT	p.Leu482_Glu483delinsPheTer	p.L482_E483delinsF*	ENST00000375401	NM_004187.3	482	ttGGaa/ttTTaa																																																																															
MED12	9968	MSKCC	GRCh37	X	70345298	70345298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	33	449	0	ENST00000374080.3:c.2324C>T	p.Thr775Ile	p.T775I	ENST00000374080		775	aCc/aTc																																																																															
ATRX	546	MSKCC	GRCh37	X	76937193	76937193	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	97	552	2	ENST00000373344.5:c.3555G>T	p.Lys1185Asn	p.K1185N	ENST00000373344	NM_000489.3	1185	aaG/aaT																																																																															
BTK	695	MSKCC	GRCh37	X	100617608	100617608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	78	436	0	ENST00000308731.7:c.461G>T	p.Cys154Phe	p.C154F	ENST00000308731	NM_000061.2	154	tGc/tTc																																																																															
ERG	2078	MSKCC	GRCh37	21	39764347	39764347	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	23	201	0	ENST00000288319.7:c.765del	p.Arg256GlyfsTer35	p.R256Gfs*35	ENST00000288319	NM_182918.3	255	ccC/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0002766-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			637	113	351	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610229	10610229	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002766-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			654	102	373	0	ENST00000171111.5:c.481A>G	p.Met161Val	p.M161V	ENST00000171111	NM_203500.1	161	Atg/Gtg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132522	11132522	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778175819		P-0002766-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			649	54	334	0	ENST00000344626.4:c.2738C>T	p.Pro913Leu	p.P913L	ENST00000344626	NM_003072.3	913	cCg/cTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0002766-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	28	264	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207077	1207077	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002766-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	110	316	0	ENST00000326873.7:c.169del	p.Glu57LysfsTer7	p.E57Kfs*7	ENST00000326873	NM_000455.4	55	ctG/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0002769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	182	264	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26911760	26911760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			740	50	352	0	ENST00000381527.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000381527	NM_001260.1	62	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0002835-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	338	467	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002835-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			160	519	379	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0002835-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	832	453	1	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699320	117699320	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002835-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1079	61	521	0	ENST00000369458.3:c.321A>C	p.Gln107His	p.Q107H	ENST00000369458	NM_024626.3	107	caA/caC																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280669	41280669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002835-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1012	365	524	0	ENST00000349496.5:c.2182G>A	p.Ala728Thr	p.A728T	ENST00000349496	NM_001904.3	728	Gcc/Acc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117687346	117687346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002835-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1069	396	513	0	ENST00000368508.3:c.2705G>A	p.Arg902Lys	p.R902K	ENST00000368508	NM_002944.2	902	aGg/aAg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563107	21563107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002835-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1300	276	383	0	ENST00000382592.4:c.812G>A	p.Arg271His	p.R271H	ENST00000382592	NM_014572.2	271	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575663	48575663	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0002835-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			358	27	364	0	ENST00000342988.3:c.425-2A>G		p.X142_splice	ENST00000342988	NM_005359.5	142																																																																																
APC	324	MSKCC	GRCh37	5	112175548	112175548	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002835-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			563	320	426	0	ENST00000257430.4:c.4260delC	p.Ser1421ValfsTer52	p.S1421Vfs*52	ENST00000257430	NM_000038.5	1419	agC/ag																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46532696	46532696	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			751	71	380	0	ENST00000262741.5:c.382C>G	p.Leu128Val	p.L128V	ENST00000262741	NM_003629.3	128	Ctg/Gtg																																																																															
FH	2271	MSKCC	GRCh37	1	241682971	241682971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	68	276	0	ENST00000366560.3:c.52C>T	p.Pro18Ser	p.P18S	ENST00000366560	NM_000143.3	18	Cca/Tca																																																																															
TP63	8626	MSKCC	GRCh37	3	189586425	189586425	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	43	203	0	ENST00000264731.3:c.1049G>C	p.Arg350Thr	p.R350T	ENST00000264731	NM_003722.4	350	aGa/aCa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38942417	38942417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			767	73	309	0	ENST00000357387.3:c.5116G>A	p.Ala1706Thr	p.A1706T	ENST00000357387	NM_152756.3	1706	Gct/Act																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557414	21557414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			772	42	457	0	ENST00000382592.4:c.2431G>A	p.Gly811Ser	p.G811S	ENST00000382592	NM_014572.2	811	Ggc/Agc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103789	47103789	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			682	131	554	0	ENST00000409792.3:c.6157del	p.Ala2053ProfsTer94	p.A2053Pfs*94	ENST00000409792	NM_014159.6	2053	Gcc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002912-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	8	446	0	ENST00000269305.4:c.596G>A	p.Gly199Glu	p.G199E	ENST00000269305	NM_001126112.2	199	gGa/gAa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721214	176721214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002912-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			428	50	285	0	ENST00000439151.2:c.6845C>A	p.Pro2282His	p.P2282H	ENST00000439151	NM_022455.4	2282	cCt/cAt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678409	88678409	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			518	49	792	0	ENST00000360948.2:c.1127A>G	p.Tyr376Cys	p.Y376C	ENST00000360948	NM_001012338.2	376	tAt/tGt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739031	40739031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			456	87	482	1	ENST00000373198.4:c.3253G>A	p.Val1085Ile	p.V1085I	ENST00000373198	NM_133170.3	1085	Gtc/Atc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0002916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			589	211	600	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			751	56	535	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0002996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			479	45	380	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			567	120	496	2	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag																																																																															
BCL6	604	MSKCC	GRCh37	3	187442833	187442833	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	43	378	0	ENST00000232014.4:c.1873A>T	p.Thr625Ser	p.T625S	ENST00000232014	NM_001130845.1	625	Act/Tct																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628055	187628055	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			730	74	600	0	ENST00000441802.2:c.2927T>C	p.Val976Ala	p.V976A	ENST00000441802	NM_005245.3	976	gTg/gCg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132839	152132839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			496	48	382	0	ENST00000262189.6:c.33G>T	p.Gln11His	p.Q11H	ENST00000262189	NM_170606.2	11	caG/caT																																																																															
FLT3	2322	MSKCC	GRCh37	13	28602355	28602355	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			749	42	599	2	ENST00000241453.7:c.2013C>A	p.His671Gln	p.H671Q	ENST00000241453	NM_004119.2	671	caC/caA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577595	7577595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	58	350	0	ENST00000269305.4:c.686G>A	p.Cys229Tyr	p.C229Y	ENST00000269305	NM_001126112.2	229	tGt/tAt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63537649	63537649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			756	50	551	0	ENST00000307078.5:c.983G>T	p.Gly328Val	p.G328V	ENST00000307078	NM_004655.3	328	gGc/gTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385223	41385223	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	117	525	0	ENST00000373198.4:c.738G>T	p.Arg246Ser	p.R246S	ENST00000373198	NM_133170.3	246	agG/agT																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811611	102811611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			847	101	840	0	ENST00000307046.8:c.573del	p.Gly194GlufsTer8	p.G194Efs*8	ENST00000307046	NM_001111285.1	191	ggC/gg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	233	504	0	ENST00000369535.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	290	369	1	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																															
INSRR	3645	MSKCC	GRCh37	1	156811916	156811916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	191	593	0	ENST00000368195.3:c.3385G>A	p.Val1129Ile	p.V1129I	ENST00000368195	NM_014215.2	1129	Gtc/Atc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49932747	49932747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144684048		P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	277	877	0	ENST00000296474.3:c.3124G>A	p.Asp1042Asn	p.D1042N	ENST00000296474	NM_002447.2	1042	Gat/Aat																																																																															
TET2	54790	MSKCC	GRCh37	4	106157893	106157893	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	149	485	0	ENST00000380013.4:c.2794G>C	p.Asp932His	p.D932H	ENST00000380013	NM_001127208.2	932	Gac/Cac																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753942	57753942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	237	507	0	ENST00000274289.3:c.682G>A	p.Ala228Thr	p.A228T	ENST00000274289	NM_006622.3	228	Gcc/Acc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562442	176562442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	672	530	0	ENST00000439151.2:c.338G>A	p.Cys113Tyr	p.C113Y	ENST00000439151	NM_022455.4	113	tGc/tAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180051032	180051032	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	134	436	0	ENST00000261937.6:c.1451C>A	p.Pro484Gln	p.P484Q	ENST00000261937	NM_182925.4	484	cCa/cAa																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858315	27858315	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1612	103	1125	0	ENST00000359303.2:c.256C>G	p.Gln86Glu	p.Q86E	ENST00000359303	NM_003535.2	86	Cag/Gag																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912174	29912174	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	103	133	0	ENST00000376809.5:c.895G>T	p.Glu299Ter	p.E299*	ENST00000376809	NM_002116.7	299	Gag/Tag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680887	30680887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	590	838	0	ENST00000376406.3:c.832G>T	p.Ala278Ser	p.A278S	ENST00000376406	NM_014641.2	278	Gca/Tca																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265487	152265487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	273	363	1	ENST00000206249.3:c.940C>A	p.Gln314Lys	p.Q314K	ENST00000206249	NM_000125.3	314	Cag/Aag																																																																															
AKT2	208	MSKCC	GRCh37	19	40762944	40762944	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	252	384	0	ENST00000392038.2:c.64T>C	p.Trp22Arg	p.W22R	ENST00000392038	NM_001626.4	22	Tgg/Cgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432347	49432347	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	396	433	0	ENST00000301067.7:c.8792del	p.Pro2931HisfsTer12	p.P2931Hfs*12	ENST00000301067	NM_003482.3	2931	cCa/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0003057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	172	328	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630000	187630000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	63	236	0	ENST00000441802.2:c.982C>A	p.His328Asn	p.H328N	ENST00000441802	NM_005245.3	328	Cat/Aat																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518715	176518715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	55	201	0	ENST00000292408.4:c.633G>A	p.Met211Ile	p.M211I	ENST00000292408	NM_213647.1	211	atG/atA																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056997	180056997	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	48	271	0	ENST00000261937.6:c.622A>G	p.Thr208Ala	p.T208A	ENST00000261937	NM_182925.4	208	Acc/Gcc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0003101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	148	165	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857047	9857047	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs568622613		P-0003101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	166	352	0	ENST00000330684.3:c.4354C>T	p.Arg1452Cys	p.R1452C	ENST00000330684	NM_001134407.1	1452	Cgc/Tgc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417868	138417868	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	155	344	0	ENST00000289153.2:c.1651T>C	p.Cys551Arg	p.C551R	ENST00000289153	NM_006219.2	551	Tgt/Cgt																																																																															
RB1	5925	MSKCC	GRCh37	13	48881505	48881505	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0003101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	141	231	0	ENST00000267163.4:c.227T>G	p.Leu76Ter	p.L76*	ENST00000267163	NM_000321.2	76	tTa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577043	7577046	+	frameshift_variant	Frame_Shift_Del	DEL	GCTC	GCTC	-			P-0003101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	143	271	0	ENST00000269305.4:c.892_895delGAGC	p.Glu298CysfsTer46	p.E298Cfs*46	ENST00000269305	NM_001126112.2	298	GAGCtg/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576910	7576910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	124	204	0	ENST00000269305.4:c.936delC	p.Ser313AlafsTer32	p.S313Afs*32	ENST00000269305	NM_001126112.2	312	acC/ac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0003425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	30	422	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0003425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	22	303	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52597493	52597493	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	15	296	0	ENST00000394830.3:c.3817C>T	p.Gln1273Ter	p.Q1273*	ENST00000394830	NM_018313.4	1273	Cag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044840	47044840	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0003425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	18	240	0	ENST00000329236.7:c.1933-1G>T		p.X645_splice	ENST00000329236	NM_001204466.1	645																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	-			P-0003425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	124	281	0	ENST00000275493.2:c.2237_2251del	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003455-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			435	21	392	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449595	149449595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003455-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			373	27	457	0	ENST00000286301.3:c.1351G>A	p.Asp451Asn	p.D451N	ENST00000286301	NM_005211.3	451	Gat/Aat																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444281	50444281	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003455-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			248	20	189	0	ENST00000331340.3:c.211T>C	p.Cys71Arg	p.C71R	ENST00000331340	NM_006060.4	71	Tgt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603042	48603042	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003455-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			238	17	205	0	ENST00000342988.3:c.1343del	p.Gln448ArgfsTer28	p.Q448Rfs*28	ENST00000342988	NM_005359.5	448	cAg/cg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984849	11984849	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0003481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	22	192	0	ENST00000353533.5:c.393+2T>A		p.X131_splice	ENST00000353533	NM_003010.3	131																																																																																
GATA3	2625	MSKCC	GRCh37	10	8115905	8115912	+	frameshift_variant	Frame_Shift_Del	DEL	CACGCCCA	CACGCCCA	-			P-0003481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	138	307	0	ENST00000346208.3:c.1252_1259del	p.Thr418AlafsTer86	p.T418Afs*86	ENST00000346208		417	acCACGCCCAcg/accg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577361	64577373	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCAGGCGGGT	CCGCCAGGCGGGT	-			P-0003481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	50	307	0	ENST00000337652.1:c.209_221del	p.Asp70AlafsTer45	p.D70Afs*45	ENST00000337652	NM_130803.2	70	gACCCGCCTGGCGGc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	349	328	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MDM4	4194	MSKCC	GRCh37	1	204515988	204515988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	83	309	0	ENST00000367182.3:c.886G>A	p.Val296Ile	p.V296I	ENST00000367182	NM_001278516.1	296	Gta/Ata																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086076	16086076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	190	318	1	ENST00000281043.3:c.1252G>A	p.Ala418Thr	p.A418T	ENST00000281043	NM_005378.4	418	Gcc/Acc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505524	25505524	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	243	366	0	ENST00000264709.3:c.234G>T	p.Met78Ile	p.M78I	ENST00000264709	NM_175629.2	78	atG/atT																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751390	57751390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	151	263	0	ENST00000274289.3:c.1601A>T	p.His534Leu	p.H534L	ENST00000274289	NM_006622.3	534	cAc/cTc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956610	93956610	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	232	506	1	ENST00000369303.4:c.2626G>T	p.Glu876Ter	p.E876*	ENST00000369303	NM_004440.3	876	Gag/Tag																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729688	41729688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	310	464	0	ENST00000242208.4:c.841G>A	p.Ala281Thr	p.A281T	ENST00000242208	NM_002192.2	281	Gca/Aca																																																																															
MYC	4609	MSKCC	GRCh37	8	128750701	128750701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	275	342	0	ENST00000377970.2:c.238C>T	p.Arg80Cys	p.R80C	ENST00000377970	NM_002467.4	80	Cgc/Tgc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5072573	5072573	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	254	243	0	ENST00000381652.3:c.1723G>T	p.Glu575Ter	p.E575*	ENST00000381652	NM_004972.3	575	Gaa/Taa																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741925	17741925	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			44	50	36	0	ENST00000250003.3:c.596C>A	p.Ala199Glu	p.A199E	ENST00000250003	NM_002478.4	199	gCg/gAg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28897004	28897004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	239	334	1	ENST00000282397.4:c.2876G>A	p.Ser959Asn	p.S959N	ENST00000282397	NM_002019.4	959	aGc/aAc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346338	73346338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	364	326	0	ENST00000377767.4:c.1462G>A	p.Asp488Asn	p.D488N	ENST00000377767	NM_014953.3	488	Gat/Aat																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576214	88576214	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	171	192	0	ENST00000360948.2:c.1459G>C	p.Gly487Arg	p.G487R	ENST00000360948	NM_001012338.2	487	Ggc/Cgc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610208	10610208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	239	360	0	ENST00000171111.5:c.502G>T	p.Val168Phe	p.V168F	ENST00000171111	NM_203500.1	168	Gtc/Ttc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459458	50459458	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	105	240	0	ENST00000331340.3:c.748del	p.Ala250GlnfsTer7	p.A250Qfs*7	ENST00000331340	NM_006060.4	249	atG/at																																																																															
STK11	6794	MSKCC	GRCh37	19	1220371	1220372	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	173	270	0	ENST00000326873.7:c.465-1_465delinsTT		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	510	213	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	33	266	0	ENST00000269305.4:c.497C>G	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tGa																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228613026	228613026	+	start_lost	Translation_Start_Site	SNP	T	T	C	rs146533230		P-0003627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	35	482	0	ENST00000366696.1:c.1A>G	p.Met1?	p.M1?	ENST00000366696	NM_003493.2	1	Atg/Gtg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136270	2136270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	19	408	0	ENST00000219476.3:c.4739G>A	p.Arg1580Gln	p.R1580Q	ENST00000219476	NM_000548.3	1580	cGg/cAg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0003656-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			184	103	562	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																															
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0003656-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			161	62	605	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157150547	157150547	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003656-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			132	59	231	0	ENST00000346085.5:c.1729C>T	p.Gln577Ter	p.Q577*	ENST00000346085	NM_020732.3	577	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692961	89692961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003656-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			73	70	289	0	ENST00000371953.3:c.445C>T	p.Gln149Ter	p.Q149*	ENST00000371953	NM_000314.4	149	Caa/Taa																																																																															
CDH1	999	MSKCC	GRCh37	16	68856020	68856020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003656-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			62	67	613	0	ENST00000261769.5:c.1828C>T	p.Gln610Ter	p.Q610*	ENST00000261769	NM_004360.3	610	Cag/Tag																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7982779	7982779	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003656-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			106	46	459	1	ENST00000319144.4:c.1006C>A	p.His336Asn	p.H336N	ENST00000319144	NM_001139.2	336	Cac/Aac																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24158967	24158967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003656-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			137	44	407	0	ENST00000263121.7:c.639G>A	p.Met213Ile	p.M213I	ENST00000263121	NM_003073.3	213	atG/atA																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176085811	176085811	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003656-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			299	71	413	0	ENST00000367669.3:c.975del	p.Ile326LeufsTer28	p.I326Lfs*28	ENST00000367669	NM_022457.5	325	atT/at																																																																															
EGFR	1956	MSKCC	GRCh37	7	55223621	55223621	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139429793		P-0003702-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			75	11	187	0	ENST00000275493.2:c.988G>A	p.Glu330Lys	p.E330K	ENST00000275493	NM_005228.3	330	Gaa/Aaa																																																																															
EED	8726	MSKCC	GRCh37	11	85956352	85956352	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003702-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			146	10	155	0	ENST00000263360.6:c.81G>C	p.Glu27Asp	p.E27D	ENST00000263360	NM_003797.3	27	gaG/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7573988	7573988	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003702-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			122	43	407	1	ENST00000269305.4:c.1039G>C	p.Ala347Pro	p.A347P	ENST00000269305	NM_001126112.2	347	Gcc/Ccc																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123505212	123505212	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003702-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			159	17	281	0	ENST00000371139.4:c.358G>C	p.Asp120His	p.D120H	ENST00000371139	NM_001114937.2	120	Gat/Cat																																																																															
INSR	3643	MSKCC	GRCh37	19	7152900	7152900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003702-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			179	11	252	0	ENST00000302850.5:c.2068G>A	p.Glu690Lys	p.E690K	ENST00000302850	NM_000208.2	690	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003933-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			618	301	248	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68856020	68856020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003933-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			317	359	479	0	ENST00000261769.5:c.1828C>T	p.Gln610Ter	p.Q610*	ENST00000261769	NM_004360.3	610	Cag/Tag																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851325	156851325	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201891311		P-0003933-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			618	161	296	2	ENST00000524377.1:c.2282G>A	p.Arg761Gln	p.R761Q	ENST00000524377	NM_002529.3	761	cGg/cAg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945694	38945694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003933-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			865	413	370	0	ENST00000357387.3:c.4532G>A	p.Gly1511Glu	p.G1511E	ENST00000357387	NM_152756.3	1511	gGa/gAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29657442	29657442	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003947-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			636	290	610	0	ENST00000358273.4:c.5738A>T	p.Lys1913Met	p.K1913M	ENST00000358273	NM_001042492.2	1913	aAg/aTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881414	37881414	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1131692237		P-0003947-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	137	295	2	ENST00000269571.5:c.2606T>G	p.Leu869Arg	p.L869R	ENST00000269571		869	cTg/cGg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061101	38061135	+	frameshift_variant	Frame_Shift_Del	DEL	GTCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGC	GTCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGC	-			P-0003947-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			77	19	63	0	ENST00000250448.2:c.854_888del	p.Ser285ThrfsTer6	p.S285Tfs*6	ENST00000250448	NM_004496.3	285	aGCGGCGCCAAGGGCGGCCCTGAGAGCCGCAAGGAC/a																																																																															
CDH1	999	MSKCC	GRCh37	16	68862143	68862144	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003947-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	230	482	0	ENST00000261769.5:c.2232dup	p.Glu745ArgfsTer3	p.E745Rfs*3	ENST00000261769	NM_004360.3	744	cca/ccAa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003958-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			286	26	486	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003958-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	144	502	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873888	151873888	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003958-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			836	82	802	0	ENST00000262189.6:c.8650C>T	p.Arg2884Ter	p.R2884*	ENST00000262189	NM_170606.2	2884	Cga/Tga																																																																															
CBFB	865	MSKCC	GRCh37	16	67100613	67100613	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003958-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			223	371	846	2	ENST00000412916.2:c.311A>G	p.Asn104Ser	p.N104S	ENST00000412916		104	aAt/aGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891104	151891104	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003958-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			802	54	528	0	ENST00000262189.6:c.4650del	p.His1551ThrfsTer12	p.H1551Tfs*12	ENST00000262189	NM_170606.2	1550	atA/at																																																																															
CDH1	999	MSKCC	GRCh37	16	68842343	68842344	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003958-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	333	983	0	ENST00000261769.5:c.406dup	p.Gln136ProfsTer32	p.Q136Pfs*32	ENST00000261769	NM_004360.3	135	atc/atCc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0003960-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			175	43	341	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860197	151860197	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003960-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	131	516	0	ENST00000262189.6:c.10465C>T	p.Gln3489Ter	p.Q3489*	ENST00000262189	NM_170606.2	3489	Caa/Taa																																																																															
CDH1	999	MSKCC	GRCh37	16	68842351	68842351	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003960-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	70	561	0	ENST00000261769.5:c.412G>T	p.Glu138Ter	p.E138*	ENST00000261769	NM_004360.3	138	Gaa/Taa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003961-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			412	231	472	0	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0004018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			237	422	430	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0004018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	247	463	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0004018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	216	278	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31369176	31369176	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	230	399	0	ENST00000328111.2:c.160C>T	p.Arg54Ter	p.R54*	ENST00000328111	NM_006892.3	54	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0004018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			262	134	138	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			267	263	436	2	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675646	30675646	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			543	215	678	0	ENST00000376406.3:c.2710C>G	p.Gln904Glu	p.Q904E	ENST00000376406	NM_014641.2	904	Caa/Gaa																																																																															
PAX5	5079	MSKCC	GRCh37	9	36840622	36840622	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			514	68	284	0	ENST00000358127.4:c.1111T>G	p.Tyr371Asp	p.Y371D	ENST00000358127	NM_001280556.1	371	Tat/Gat																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245795	5245795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	120	261	0	ENST00000357368.4:c.980C>T	p.Thr327Met	p.T327M	ENST00000357368	NM_002850.3	327	aCg/aTg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164616	36164616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			378	157	291	0	ENST00000300305.3:c.1259G>A	p.Gly420Asp	p.G420D	ENST00000300305		420	gGc/gAc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44514857	44514857	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			544	300	408	0	ENST00000291552.4:c.390G>C	p.Leu130Phe	p.L130F	ENST00000291552	NM_006758.2	130	ttG/ttC																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652398	48652398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			99	200	277	0	ENST00000376670.3:c.1069C>T	p.Pro357Ser	p.P357S	ENST00000376670	NM_002049.3	357	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0004072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	98	224	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	249	288	0	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259476	89259476	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	91	315	0	ENST00000336596.2:c.620A>G	p.Lys207Arg	p.K207R	ENST00000336596	NM_005233.5	207	aAg/aGg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169272	32169272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	135	188	0	ENST00000375023.3:c.3761C>A	p.Ala1254Asp	p.A1254D	ENST00000375023	NM_004557.3	1254	gCc/gAc																																																																															
MET	4233	MSKCC	GRCh37	7	116411930	116411930	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	172	244	0	ENST00000397752.3:c.2915A>C	p.Asp972Ala	p.D972A	ENST00000397752	NM_000245.2	972	gAt/gCt																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727454	66727454	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	17	276	0	ENST00000307102.5:c.170A>C	p.Lys57Thr	p.K57T	ENST00000307102	NM_002755.3	57	aAg/aCg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299062	15299062	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	177	315	0	ENST00000263388.2:c.1476C>G	p.Ser492Arg	p.S492R	ENST00000263388	NM_000435.2	492	agC/agG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952149	178952150	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTCA			P-0004072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	118	182	0	ENST00000263967.3:c.3205_3206insTCAT	p.Ter1069PhefsTer5	p.*1069Ffs*5	ENST00000263967	NM_006218.2	1068	-/TTCA																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245759	41245759	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004290-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			614	52	269	1	ENST00000357654.3:c.1789G>T	p.Glu597Ter	p.E597*	ENST00000357654	NM_007294.3	597	Gaa/Taa																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200046	128200046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004290-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			920	92	283	1	ENST00000341105.2:c.1259G>A	p.Cys420Tyr	p.C420Y	ENST00000341105	NM_032638.4	420	tGc/tAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0004454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	98	368	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0004454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	139	365	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0004454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	132	470	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944944	31944944	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144139961		P-0004454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	79	228	0	ENST00000340398.3:c.157C>T	p.Arg53Cys	p.R53C	ENST00000340398	NM_001013699.2	53	Cgt/Tgt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271913	18271913	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	99	223	0	ENST00000222254.8:c.516C>A	p.Asp172Glu	p.D172E	ENST00000222254	NM_005027.3	172	gaC/gaA																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492789	56492790	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACTCTGATAACAGCTTTCT			P-0004454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	114	370	0	ENST00000407977.2:c.149_150insAGAAAGCTGTTATCAGAGT	p.Ile51GlufsTer30	p.I51Efs*30	ENST00000407977		50	gtg/gtAGAAAGCTGTTATCAGAGTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004716-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			394	173	299	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0004716-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			217	260	361	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469507	25469507	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004716-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			351	174	489	0	ENST00000264709.3:c.1261G>C	p.Gly421Arg	p.G421R	ENST00000264709	NM_175629.2	421	Ggc/Cgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909231		P-0004716-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			121	125	182	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61213514	61213514	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004716-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			361	215	326	0	ENST00000301761.2:c.472C>A	p.Leu158Ile	p.L158I	ENST00000301761	NM_017841.2	158	Ctt/Att																																																																															
ATM	472	MSKCC	GRCh37	11	108143284	108143284	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004716-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			190	213	336	0	ENST00000278616.4:c.3103A>G	p.Ile1035Val	p.I1035V	ENST00000278616	NM_000051.3	1035	Ata/Gta																																																																															
ARID2	196528	MSKCC	GRCh37	12	46205217	46205217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004716-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			417	185	333	0	ENST00000334344.6:c.301G>A	p.Glu101Lys	p.E101K	ENST00000334344	NM_152641.2	101	Gag/Aag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807359	3807359	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004716-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			361	192	341	0	ENST00000262367.5:c.3628A>G	p.Thr1210Ala	p.T1210A	ENST00000262367	NM_004380.2	1210	Act/Gct																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004716-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			146	174	310	0	ENST00000342988.3:c.1255G>A	p.Gly419Arg	p.G419R	ENST00000342988	NM_005359.5	419	Ggg/Agg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53253974	53253974	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004716-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			446	291	533	0	ENST00000375401.3:c.98A>C	p.Lys33Thr	p.K33T	ENST00000375401	NM_004187.3	33	aAa/aCa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411818	63411818	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004716-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			533	254	624	0	ENST00000330258.3:c.1349del	p.Pro450LeufsTer5	p.P450Lfs*5	ENST00000330258	NM_152424.3	450	cCt/ct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0004729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	143	391	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0004729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	198	301	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0004729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	204	410	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61726905	61726905	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	139	439	0	ENST00000401558.2:c.533T>C	p.Val178Ala	p.V178A	ENST00000401558	NM_003400.3	178	gTa/gCa																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72861891	72861891	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	103	388	0	ENST00000325599.8:c.991T>G	p.Tyr331Asp	p.Y331D	ENST00000325599	NM_018130.2	331	Tac/Gac																																																																															
APC	324	MSKCC	GRCh37	5	112174682	112174682	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	133	432	1	ENST00000257430.4:c.3391C>T	p.Gln1131Ter	p.Q1131*	ENST00000257430	NM_000038.5	1131	Caa/Taa																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966554	36966554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	147	351	0	ENST00000358127.4:c.772C>A	p.Pro258Thr	p.P258T	ENST00000358127	NM_001280556.1	258	Ccc/Acc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56493736	56493736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	131	514	0	ENST00000267101.3:c.3052G>T	p.Glu1018Ter	p.E1018*	ENST00000267101	NM_001982.3	1018	Gag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112035	115112035	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	87	364	0	ENST00000257566.3:c.1705G>C	p.Gly569Arg	p.G569R	ENST00000257566	NM_016569.3	569	Gga/Cga																																																																															
MED12	9968	MSKCC	GRCh37	X	70340935	70340935	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	135	589	0	ENST00000374080.3:c.668C>A	p.Pro223His	p.P223H	ENST00000374080		223	cCc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604697	48604697	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	88	416	0	ENST00000342988.3:c.1521del	p.Gly508AlafsTer29	p.G508Afs*29	ENST00000342988	NM_005359.5	507	Aaa/aa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			210	354	418	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			126	242	369	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115111972	115111972	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			201	99	185	0	ENST00000257566.3:c.1768C>T	p.Gln590Ter	p.Q590*	ENST00000257566	NM_016569.3	590	Cag/Tag																																																																															
MPL	4352	MSKCC	GRCh37	1	43804268	43804268	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs763144679		P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			617	291	465	1	ENST00000372470.3:c.268C>T	p.Arg90Ter	p.R90*	ENST00000372470	NM_005373.2	90	Cga/Tga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65335081	65335081	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			623	288	466	0	ENST00000342505.4:c.560A>G	p.Asn187Ser	p.N187S	ENST00000342505	NM_002227.2	187	aAc/aGc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193091349	193091349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			373	188	302	0	ENST00000367435.3:c.19G>T	p.Val7Phe	p.V7F	ENST00000367435	NM_024529.4	7	Gtc/Ttc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965256	25965256	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			132	224	319	0	ENST00000435504.4:c.3950A>G	p.Tyr1317Cys	p.Y1317C	ENST00000435504		1317	tAt/tGt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968250	134968250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			544	303	476	0	ENST00000398015.3:c.2763C>A	p.Ser921Arg	p.S921R	ENST00000398015	NM_004441.4	921	agC/agA																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430429	181430429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			635	438	516	0	ENST00000325404.1:c.281C>T	p.Ala94Val	p.A94V	ENST00000325404	NM_003106.3	94	gCt/gTt																																																																															
TET2	54790	MSKCC	GRCh37	4	106164084	106164084	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			353	220	309	1	ENST00000380013.4:c.3594G>T	p.Trp1198Cys	p.W1198C	ENST00000380013	NM_001127208.2	1198	tgG/tgT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540003	187540003	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			474	276	427	0	ENST00000441802.2:c.7737C>A	p.Phe2579Leu	p.F2579L	ENST00000441802	NM_005245.3	2579	ttC/ttA																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750451	57750451	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			588	304	528	0	ENST00000274289.3:c.2017A>G	p.Met673Val	p.M673V	ENST00000274289	NM_006622.3	673	Atg/Gtg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750740	57750740	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			441	230	432	0	ENST00000274289.3:c.1864C>G	p.Gln622Glu	p.Q622E	ENST00000274289	NM_006622.3	622	Cag/Gag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048229	180048229	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			324	188	326	0	ENST00000261937.6:c.2044C>A	p.Gln682Lys	p.Q682K	ENST00000261937	NM_182925.4	682	Cag/Aag																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004912	150004912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			680	402	611	1	ENST00000253339.5:c.1313C>T	p.Ser438Phe	p.S438F	ENST00000253339		438	tCt/tTt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139403521	139403521	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			134	198	321	0	ENST00000277541.6:c.2972C>T	p.Ser991Phe	p.S991F	ENST00000277541	NM_017617.3	991	tCc/tTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133245035	133245035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			418	231	391	0	ENST00000320574.5:c.2080A>G	p.Lys694Glu	p.K694E	ENST00000320574	NM_006231.2	694	Aag/Gag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602370	10602370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			240	409	539	0	ENST00000171111.5:c.1208G>T	p.Trp403Leu	p.W403L	ENST00000171111	NM_203500.1	403	tGg/tTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145591	11145591	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			72	141	185	0	ENST00000344626.4:c.3953G>C	p.Arg1318Pro	p.R1318P	ENST00000344626	NM_003072.3	1318	cGc/cCc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953870	17953870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			166	304	451	0	ENST00000458235.1:c.532G>T	p.Ala178Ser	p.A178S	ENST00000458235	NM_000215.3	178	Gcc/Tcc																																																																															
ATRX	546	MSKCC	GRCh37	X	76889128	76889128	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			153	520	412	0	ENST00000373344.5:c.4882C>G	p.Leu1628Val	p.L1628V	ENST00000373344	NM_000489.3	1628	Ctt/Gtt																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665436	138665436	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			221	119	257	0	ENST00000330315.3:c.129del	p.Thr44GlnfsTer106	p.T44Qfs*106	ENST00000330315	NM_023067.3	43	ggG/gg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971082	21971083	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			74	125	207	0	ENST00000304494.5:c.275dup	p.Asp92GlufsTer28	p.D92Efs*28	ENST00000304494	NM_000077.4	92	gac/gaAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55154992	55154993	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			670	318	555	0	ENST00000257290.5:c.2702dup	p.Asp902GlyfsTer7	p.D902Gfs*7	ENST00000257290	NM_006206.4	901	gtg/gTtg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239840	53239856	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CCCCAGGGTCCCACTCA	CCCCAGGGTCCCACTCA	-			P-0004733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			125	326	273	0	ENST00000375401.3:c.1583+2_1583+18del		p.X528_splice	ENST00000375401	NM_004187.3	528																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	1114	262	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	119	283	0	ENST00000269305.4:c.532delC	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578528	7578528	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	66	333	0	ENST00000269305.4:c.402T>G	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	ttT/ttG																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45796231	45796231	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	337	455	0	ENST00000372115.3:c.1435-2A>C		p.X479_splice	ENST00000372115	NM_001048171.1	479																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52613145	52613145	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	83	433	0	ENST00000394830.3:c.3383A>G	p.Tyr1128Cys	p.Y1128C	ENST00000394830	NM_018313.4	1128	tAc/tGc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294142	1294142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	122	310	0	ENST00000310581.5:c.859G>T	p.Gly287Cys	p.G287C	ENST00000310581	NM_198253.2	287	Ggt/Tgt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138187	64138187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	153	307	0	ENST00000334205.4:c.2110G>A	p.Ala704Thr	p.A704T	ENST00000334205	NM_003942.2	704	Gcc/Acc																																																																															
ATM	472	MSKCC	GRCh37	11	108114790	108114790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	95	247	0	ENST00000278616.4:c.607G>A	p.Asp203Asn	p.D203N	ENST00000278616	NM_000051.3	203	Gac/Aac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109852	115109852	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	84	190	0	ENST00000257566.3:c.2026G>T	p.Ala676Ser	p.A676S	ENST00000257566	NM_016569.3	676	Gcc/Tcc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17949144	17949144	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	100	446	0	ENST00000458235.1:c.1497G>T	p.Leu499Phe	p.L499F	ENST00000458235	NM_000215.3	499	ttG/ttT																																																																															
AKT2	208	MSKCC	GRCh37	19	40748538	40748538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	92	432	1	ENST00000392038.2:c.344C>T	p.Pro115Leu	p.P115L	ENST00000392038	NM_001626.4	115	cCa/cTa																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664761	138664761	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	20	20	0	ENST00000330315.3:c.804del	p.Gly269AlafsTer2	p.G269Afs*2	ENST00000330315	NM_023067.3	268	ccC/cc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105684	27105688	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAG	AGAAG	C			P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	248	334	0	ENST00000324856.7:c.5295_5299delinsC	p.Glu1765AspfsTer4	p.E1765Dfs*4	ENST00000324856	NM_006015.4	1765	gaAGAAGaa/gaCaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0004897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	406	724	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0004897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	271	308	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851754	134851754	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56396912		P-0004897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	139	515	3	ENST00000398015.3:c.1160C>T	p.Thr387Met	p.T387M	ENST00000398015	NM_004441.4	387	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112111408	112111411	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0004897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	87	444	0	ENST00000257430.4:c.509_512del	p.Asp170ValfsTer4	p.D170Vfs*4	ENST00000257430	NM_000038.5	169	ATAGat/at																																																																															
CDK8	1024	MSKCC	GRCh37	13	26959351	26959351	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	87	321	0	ENST00000381527.3:c.518A>G	p.Asp173Gly	p.D173G	ENST00000381527	NM_001260.1	173	gAc/gGc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44515848	44515848	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	144	629	1	ENST00000291552.4:c.205G>T	p.Val69Leu	p.V69L	ENST00000291552	NM_006758.2	69	Gtg/Ttg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913125	32913126	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	142	825	1	ENST00000380152.3:c.4633_4634insG	p.Leu1545ArgfsTer3	p.L1545Rfs*3	ENST00000380152		1545	ctt/cGtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577576	7577578	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0005137-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			200	439	499	0	ENST00000269305.4:c.703_705del	p.Asn235del	p.N235del	ENST00000269305	NM_001126112.2	235	AAC/-																																																																															
APC	324	MSKCC	GRCh37	5	112175211	112175212	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005137-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			180	86	254	0	ENST00000257430.4:c.3924dup	p.Glu1309ArgfsTer6	p.E1309Rfs*6	ENST00000257430	NM_000038.5	1307	ata/atAa																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366982	40366982	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005137-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			141	208	471	0	ENST00000397332.2:c.215C>A	p.Ser72Ter	p.S72*	ENST00000397332	NM_001033082.2	72	tCg/tAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412464	63412464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005137-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			571	290	895	1	ENST00000330258.3:c.703C>T	p.Pro235Ser	p.P235S	ENST00000330258	NM_152424.3	235	Cct/Tct																																																																															
APC	324	MSKCC	GRCh37	5	112173502	112173506	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CAAGG	CAAGG	-			P-0005137-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			247	102	408	0	ENST00000257430.4:c.2211_2215del	p.Tyr737Ter	p.Y737*	ENST00000257430	NM_000038.5	737	taCAAGGat/taat																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576761	67576762	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005137-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			70	91	164	0	ENST00000274335.5:c.845dup	p.Asn282LysfsTer3	p.N282Kfs*3	ENST00000274335		281	-/A																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0005152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	215	237	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
PAK7	57144	MSKCC	GRCh37	20	9543627	9543627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	30	423	0	ENST00000353224.5:c.1527G>A	p.Met509Ile	p.M509I	ENST00000353224	NM_177990.2	509	atG/atA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411072	63411072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	48	468	0	ENST00000330258.3:c.2095C>T	p.Arg699Cys	p.R699C	ENST00000330258	NM_152424.3	699	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0005217-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			854	67	998	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061218	38061238	+	inframe_deletion	In_Frame_Del	DEL	GCCGTTCTCGAACATGTTGCC	GCCGTTCTCGAACATGTTGCC	-			P-0005217-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			862	111	621	0	ENST00000250448.2:c.751_771del	p.Gly251_Gly257del	p.G251_G257del	ENST00000250448	NM_004496.3	251	GGCAACATGTTCGAGAACGGC/-																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	137	641	7	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0005237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	71	635	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508805	106508805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	79	605	1	ENST00000359195.3:c.799G>A	p.Glu267Lys	p.E267K	ENST00000359195	NM_002649.2	267	Gaa/Aaa																																																																															
ALK	238	MSKCC	GRCh37	2	29432664	29432664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	44	569	1	ENST00000389048.3:c.3824G>A	p.Arg1275Gln	p.R1275Q	ENST00000389048	NM_004304.4	1275	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0005237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	123	605	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466324	120466324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	50	524	0	ENST00000256646.2:c.4795G>T	p.Ala1599Ser	p.A1599S	ENST00000256646	NM_024408.3	1599	Gct/Tct																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858467	27858467	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113019637		P-0005237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	80	918	0	ENST00000359303.2:c.104G>A	p.Gly35Asp	p.G35D	ENST00000359303	NM_003535.2	35	gGt/gAt																																																																															
PAX5	5079	MSKCC	GRCh37	9	36840565	36840565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	26	514	1	ENST00000358127.4:c.1168C>T	p.Arg390Cys	p.R390C	ENST00000358127	NM_001280556.1	390	Cgt/Tgt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864515	57864515	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	82	737	2	ENST00000228682.2:c.1992T>A	p.His664Gln	p.H664Q	ENST00000228682	NM_005269.2	664	caT/caA																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866663	37866663	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	103	619	1	ENST00000269571.5:c.830A>T	p.Asp277Val	p.D277V	ENST00000269571		277	gAc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0005240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	158	322	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448592	89448592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	455	519	0	ENST00000336596.2:c.1556C>T	p.Thr519Met	p.T519M	ENST00000336596	NM_005233.5	519	aCg/aTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953229	81953229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	163	696	0	ENST00000359376.3:c.2195G>A	p.Arg732His	p.R732H	ENST00000359376	NM_002661.3	732	cGc/cAc																																																																															
XIAP	331	MSKCC	GRCh37	X	123034385	123034385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	131	357	0	ENST00000355640.3:c.1142G>A	p.Arg381Gln	p.R381Q	ENST00000355640		381	cGa/cAa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38968098	38968098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1258	147	563	0	ENST00000357387.3:c.1007G>A	p.Arg336His	p.R336H	ENST00000357387	NM_152756.3	336	cGt/cAt																																																																															
IRF4	3662	MSKCC	GRCh37	6	394848	394848	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	95	428	0	ENST00000380956.4:c.244C>T	p.Arg82Ter	p.R82*	ENST00000380956	NM_001195286.1	82	Cga/Tga																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38315029	38315029	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	107	495	0	ENST00000425967.3:c.35A>T	p.Glu12Val	p.E12V	ENST00000425967	NM_001174067.1	12	gAg/gTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710517	114710517	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0005240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1324	328	599	0	ENST00000543371.1:c.2T>A	p.Met1?	p.M1?	ENST00000543371	NM_001198531.1	1	aTg/aAg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912541	32912541	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1861	205	823	0	ENST00000380152.3:c.4049A>G	p.His1350Arg	p.H1350R	ENST00000380152		1350	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112151245	112151246	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0005240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	333	567	0	ENST00000257430.4:c.893_894del	p.His298LeufsTer28	p.H298Lfs*28	ENST00000257430	NM_000038.5	296	agCAca/agca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0005541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	47	388	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
MET	4233	MSKCC	GRCh37	7	116340263	116340263	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	46	418	0	ENST00000397752.3:c.1125C>A	p.Asn375Lys	p.N375K	ENST00000397752	NM_000245.2	375	aaC/aaA																																																																															
BIRC3	330	MSKCC	GRCh37	11	102207533	102207533	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0005541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1287	81	608	0	ENST00000263464.3:c.1621+1G>T		p.X541_splice	ENST00000263464	NM_001165.4	541																																																																																
RPTOR	57521	MSKCC	GRCh37	17	78727894	78727894	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	61	419	0	ENST00000306801.3:c.739G>T	p.Glu247Ter	p.E247*	ENST00000306801	NM_020761.2	247	Gag/Tag																																																																															
ARAF	369	MSKCC	GRCh37	X	47424664	47424664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	42	348	0	ENST00000377045.4:c.472G>T	p.Val158Phe	p.V158F	ENST00000377045	NM_001654.4	158	Gtc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			467	73	434	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			494	56	308	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46532739	46532739	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200819515		P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			434	92	301	0	ENST00000262741.5:c.339A>G	p.Ile113Met	p.I113M	ENST00000262741	NM_003629.3	113	atA/atG																																																																															
PARP1	142	MSKCC	GRCh37	1	226561959	226561959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			530	93	428	0	ENST00000366794.5:c.2038G>A	p.Glu680Lys	p.E680K	ENST00000366794	NM_001618.3	680	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178948143	178948143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			525	89	261	0	ENST00000263967.3:c.2915C>T	p.Thr972Ile	p.T972I	ENST00000263967	NM_006218.2	972	aCa/aTa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6043638	6043638	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			400	26	257	0	ENST00000265849.7:c.215G>C	p.Gly72Ala	p.G72A	ENST00000265849	NM_000535.5	72	gGa/gCa																																																																															
CCND1	595	MSKCC	GRCh37	11	69456273	69456273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			482	49	273	0	ENST00000227507.2:c.192G>A	p.Met64Ile	p.M64I	ENST00000227507	NM_053056.2	64	atG/atA																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562168	21562168	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1264	173	669	0	ENST00000382592.4:c.1751G>T	p.Ser584Ile	p.S584I	ENST00000382592	NM_014572.2	584	aGc/aTc																																																																															
MGA	23269	MSKCC	GRCh37	15	41989018	41989018	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			866	180	728	0	ENST00000219905.7:c.1810C>T	p.Gln604Ter	p.Q604*	ENST00000219905	NM_001164273.1	604	Cag/Tag																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612340	1612340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			678	138	724	0	ENST00000344749.5:c.1679G>T	p.Arg560Leu	p.R560L	ENST00000344749	NM_001136139.2	560	cGg/cTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610239	10610239	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			693	127	631	0	ENST00000171111.5:c.471C>A	p.Asn157Lys	p.N157K	ENST00000171111	NM_203500.1	157	aaC/aaA																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164889	36164889	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1358657401		P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			339	36	275	0	ENST00000300305.3:c.986C>T	p.Ala329Val	p.A329V	ENST00000300305		329	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578470	7578471	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	A			P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			503	68	442	0	ENST00000269305.4:c.459_460delinsT	p.Gly154AlafsTer16	p.G154Afs*16	ENST00000269305	NM_001126112.2	153	ccCGgc/ccTgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005563-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			778	285	356	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0005563-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			693	328	471	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0005563-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			514	342	343	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
PARP1	142	MSKCC	GRCh37	1	226568861	226568861	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150379323		P-0005563-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			837	242	383	1	ENST00000366794.5:c.1208G>A	p.Arg403Gln	p.R403Q	ENST00000366794	NM_001618.3	403	cGg/cAg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032181	10032181	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005563-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			710	199	414	0	ENST00000330684.3:c.642G>T	p.Lys214Asn	p.K214N	ENST00000330684	NM_001134407.1	214	aaG/aaT																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287889	33287891	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0005563-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			848	131	355	0	ENST00000374542.5:c.1362_1364del	p.Glu457del	p.E457del	ENST00000374542	NM_001141970.1	454	gaAGAg/gag																																																																															
BAP1	8314	MSKCC	GRCh37	3	52443610	52443610	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	400	294	0	ENST00000460680.1:c.82C>T	p.Gln28Ter	p.Q28*	ENST00000460680	NM_004656.3	28	Caa/Taa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272113	15272113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	76	141	0	ENST00000263388.2:c.6326G>A	p.Arg2109Gln	p.R2109Q	ENST00000263388	NM_000435.2	2109	cGg/cAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76874410	76874410	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	127	440	0	ENST00000373344.5:c.5312G>C	p.Gly1771Ala	p.G1771A	ENST00000373344	NM_000489.3	1771	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0005622-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			260	117	415	0	ENST00000269305.4:c.686_687delGT	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																																																															
FLT4	2324	MSKCC	GRCh37	5	180052972	180052972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005622-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			418	159	657	0	ENST00000261937.6:c.1318C>T	p.Arg440Cys	p.R440C	ENST00000261937	NM_182925.4	440	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0005645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	264	223	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260036	16260036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	92	275	0	ENST00000375759.3:c.7301C>T	p.Pro2434Leu	p.P2434L	ENST00000375759	NM_015001.2	2434	cCt/cTt																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78433868	78433868	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	96	241	0	ENST00000370768.2:c.231A>T	p.Lys77Asn	p.K77N	ENST00000370768	NM_003902.3	77	aaA/aaT																																																																															
BCL6	604	MSKCC	GRCh37	3	187446862	187446862	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	114	286	0	ENST00000232014.4:c.1331G>T	p.Ser444Ile	p.S444I	ENST00000232014	NM_001130845.1	444	aGc/aTc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149505133	149505133	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	129	393	0	ENST00000261799.4:c.1682G>C	p.Arg561Pro	p.R561P	ENST00000261799	NM_002609.3	561	cGt/cCt																																																																															
ATM	472	MSKCC	GRCh37	11	108114835	108114835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	185	135	0	ENST00000278616.4:c.652C>T	p.Gln218Ter	p.Q218*	ENST00000278616	NM_000051.3	218	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984829	72984829	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	230	464	0	ENST00000268489.5:c.2755G>T	p.Gly919Cys	p.G919C	ENST00000268489	NM_006885.3	919	Ggc/Tgc																																																																															
MED12	9968	MSKCC	GRCh37	X	70342600	70342600	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	76	364	1	ENST00000374080.3:c.1361G>T	p.Gly454Val	p.G454V	ENST00000374080		454	gGa/gTa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0005697-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			538	153	352	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005697-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			332	175	407	0	ENST00000269305.4:c.770T>A	p.Leu257Gln	p.L257Q	ENST00000269305	NM_001126112.2	257	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0005734-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			470	70	299	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
RB1	5925	MSKCC	GRCh37	13	48947596	48947596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005734-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			296	50	223	0	ENST00000267163.4:c.1183C>T	p.Gln395Ter	p.Q395*	ENST00000267163	NM_000321.2	395	Caa/Taa																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794995	242794995	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005734-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			643	100	458	0	ENST00000334409.5:c.214C>A	p.Pro72Thr	p.P72T	ENST00000334409	NM_005018.2	72	Ccc/Acc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11169567	11169567	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0005734-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			326	53	297	0	ENST00000344626.4:c.4635+2T>A		p.X1545_splice	ENST00000344626	NM_003072.3	1545																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15288456	15288456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005734-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			316	59	191	1	ENST00000263388.2:c.4283G>A	p.Cys1428Tyr	p.C1428Y	ENST00000263388	NM_000435.2	1428	tGc/tAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15300195	15300195	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005734-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			554	96	450	0	ENST00000263388.2:c.1081C>G	p.His361Asp	p.H361D	ENST00000263388	NM_000435.2	361	Cac/Gac																																																																															
ATRX	546	MSKCC	GRCh37	X	76777859	76777859	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005734-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			188	41	173	0	ENST00000373344.5:c.6857C>G	p.Thr2286Ser	p.T2286S	ENST00000373344	NM_000489.3	2286	aCc/aGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005738-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			342	91	340	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0005739-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			475	28	405	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
ALK	238	MSKCC	GRCh37	2	29917797	29917797	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748854412		P-0005739-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			440	35	465	0	ENST00000389048.3:c.871C>T	p.Arg291Cys	p.R291C	ENST00000389048	NM_004304.4	291	Cgc/Tgc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0005739-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			499	129	315	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
TET2	54790	MSKCC	GRCh37	4	106164773	106164773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005739-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			513	36	387	0	ENST00000380013.4:c.3641G>A	p.Arg1214Gln	p.R1214Q	ENST00000380013	NM_001127208.2	1214	cGg/cAg																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538978	23538978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005739-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			429	40	428	0	ENST00000380871.4:c.461G>A	p.Arg154Gln	p.R154Q	ENST00000380871	NM_006167.3	154	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112174374	112174374	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005739-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			337	22	293	0	ENST00000257430.4:c.3083del	p.Ser1028IlefsTer9	p.S1028Ifs*9	ENST00000257430	NM_000038.5	1028	aGt/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0005743-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			308	68	564	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143003313	143003313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005743-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			479	60	338	0	ENST00000262992.4:c.2513G>A	p.Arg838His	p.R838H	ENST00000262992	NM_001101669.1	838	cGt/cAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346363	89346363	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005743-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			384	73	523	1	ENST00000301030.4:c.6587C>A	p.Ser2196Tyr	p.S2196Y	ENST00000301030	NM_001256183.1	2196	tCc/tAc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005771-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			333	279	265	0	ENST00000250448.2:c.781C>G	p.Arg261Gly	p.R261G	ENST00000250448	NM_004496.3	261	Cgc/Ggc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657645	37657645	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005771-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			333	571	460	0	ENST00000447079.4:c.2564delT	p.Phe855SerfsTer13	p.F855Sfs*13	ENST00000447079	NM_015083.1	854	aaT/aa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37676313	37676313	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005771-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			607	233	449	0	ENST00000447079.4:c.3068delT	p.Val1023AlafsTer34	p.V1023Afs*34	ENST00000447079	NM_015083.1	1023	gTc/gc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005773-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			736	378	798	0	ENST00000263967.3:c.316G>C	p.Gly106Arg	p.G106R	ENST00000263967	NM_006218.2	106	Ggc/Cgc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0005773-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			263	160	503	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
PARP1	142	MSKCC	GRCh37	1	226574091	226574091	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0005773-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			561	114	664	0	ENST00000366794.5:c.770C>G	p.Ser257Ter	p.S257*	ENST00000366794	NM_001618.3	257	tCa/tGa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095941	178095941	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005773-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			314	102	399	0	ENST00000397062.3:c.1390C>G	p.Leu464Val	p.L464V	ENST00000397062	NM_006164.4	464	Ctc/Gtc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884825	134884825	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005773-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			279	172	500	0	ENST00000398015.3:c.1601A>C	p.Glu534Ala	p.E534A	ENST00000398015	NM_004441.4	534	gAg/gCg																																																																															
ATR	545	MSKCC	GRCh37	3	142180886	142180886	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142918229		P-0005773-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			257	120	463	0	ENST00000350721.4:c.7088G>A	p.Arg2363Gln	p.R2363Q	ENST00000350721	NM_001184.3	2363	cGa/cAa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056533	26056533	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005773-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			203	75	206	0	ENST00000343677.2:c.124G>C	p.Glu42Gln	p.E42Q	ENST00000343677	NM_005319.3	42	Gag/Cag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929243	32929243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs398122578		P-0005773-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			428	192	892	0	ENST00000380152.3:c.7253G>A	p.Arg2418Lys	p.R2418K	ENST00000380152		2418	aGa/aAa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061478	38061478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005773-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			726	955	466	0	ENST00000250448.2:c.511C>T	p.Pro171Ser	p.P171S	ENST00000250448	NM_004496.3	171	Ccg/Tcg																																																																															
BTK	695	MSKCC	GRCh37	X	100625001	100625001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005773-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			204	91	287	0	ENST00000308731.7:c.376C>T	p.His126Tyr	p.H126Y	ENST00000308731	NM_000061.2	126	Cac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005868-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			506	256	356	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221320	1221320	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005868-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			435	106	444	0	ENST00000326873.7:c.843delG	p.Leu282SerfsTer5	p.L282Sfs*5	ENST00000326873	NM_000455.4	281	ccG/cc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602496	10602496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005868-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			322	106	364	0	ENST00000171111.5:c.1082C>T	p.Pro361Leu	p.P361L	ENST00000171111	NM_203500.1	361	cCg/cTg																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997780	149997780	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148506316		P-0005868-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			481	151	390	0	ENST00000253339.5:c.2687G>A	p.Arg896Gln	p.R896Q	ENST00000253339		896	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005881-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			586	71	406	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0005881-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			726	66	579	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145430	58145430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005881-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			702	53	452	1	ENST00000257904.6:c.71G>A	p.Arg24His	p.R24H	ENST00000257904	NM_000075.3	24	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101353	27101353	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005881-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			808	43	554	1	ENST00000324856.7:c.4635G>A	p.Trp1545Ter	p.W1545*	ENST00000324856	NM_006015.4	1545	tgG/tgA																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178023	56178023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005881-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			584	31	405	0	ENST00000399503.3:c.2996C>T	p.Thr999Ile	p.T999I	ENST00000399503	NM_005921.1	999	aCa/aTa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500395	99500395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005881-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			934	51	659	0	ENST00000268035.6:c.3828G>T	p.Glu1276Asp	p.E1276D	ENST00000268035	NM_000875.3	1276	gaG/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0006000-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			865	106	404	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225264		P-0006000-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			474	45	201	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																															
SRC	6714	MSKCC	GRCh37	20	36031697	36031697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006000-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	60	445	1	ENST00000358208.4:c.1526G>A	p.Arg509Gln	p.R509Q	ENST00000358208		509	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112174998	112174999	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0006000-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			542	47	271	0	ENST00000257430.4:c.3709_3710del	p.Gln1237GlufsTer2	p.Q1237Efs*2	ENST00000257430	NM_000038.5	1236	gCA/g																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572552	64572552	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	261	376	1	ENST00000337652.1:c.1319del	p.Gly440AlafsTer10	p.G440Afs*10	ENST00000337652	NM_130803.2	440	gGc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006023-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			489	132	334	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0006023-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			817	182	520	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0006023-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			436	66	409	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266970	18266970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006023-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			95	32	64	0	ENST00000222254.8:c.281G>A	p.Arg94His	p.R94H	ENST00000222254	NM_005027.3	94	cGc/cAc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484814	57484814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006023-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			522	933	477	0	ENST00000371085.3:c.794G>T	p.Arg265Leu	p.R265L	ENST00000371085	NM_000516.4	265	cGc/cTc																																																																															
AR	367	MSKCC	GRCh37	X	66766193	66766193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006023-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			117	173	142	1	ENST00000374690.3:c.1205C>T	p.Ala402Val	p.A402V	ENST00000374690	NM_000044.3	402	gCg/gTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557814	187557814	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006023-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			627	148	565	0	ENST00000441802.2:c.3897del	p.Lys1299AsnfsTer69	p.K1299Nfs*69	ENST00000441802	NM_005245.3	1299	aaA/aa																																																																															
APC	324	MSKCC	GRCh37	5	112176013	112176016	+	frameshift_variant	Frame_Shift_Del	DEL	ACTA	ACTA	-			P-0006023-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			359	92	357	0	ENST00000257430.4:c.4722_4725del	p.Ile1574MetfsTer75	p.I1574Mfs*75	ENST00000257430	NM_000038.5	1574	atACTA/at																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0006149-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			562	160	331	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013741	12013741	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0006149-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			442	35	309	0	ENST00000353533.5:c.683G>C	p.Arg228Thr	p.R228T	ENST00000353533	NM_003010.3	228	aGa/aCa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131939727	131939727	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006149-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			516	107	336	0	ENST00000265335.6:c.2513A>C	p.Lys838Thr	p.K838T	ENST00000265335		838	aAg/aCg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853050	151853050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006149-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			377	68	194	0	ENST00000262189.6:c.11905G>A	p.Val3969Ile	p.V3969I	ENST00000262189	NM_170606.2	3969	Gtt/Att																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0006261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	183	413	1	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	190	484	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174929	11174929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	178	561	0	ENST00000361445.4:c.7105G>A	p.Glu2369Lys	p.E2369K	ENST00000361445	NM_004958.3	2369	Gag/Aag																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154321	2154321	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150866176		P-0006261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	171	654	0	ENST00000434045.2:c.607G>A	p.Glu203Lys	p.E203K	ENST00000434045	NM_001127598.1	203	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	211	244	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517202		P-0006335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	322	442	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741707	145741707	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs543009701		P-0006335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	323	345	0	ENST00000428558.2:c.796G>A	p.Glu266Lys	p.E266K	ENST00000428558	NM_004260.3	266	Gag/Aag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115111972	115111972	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0006335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	312	234	0	ENST00000257566.3:c.1768C>T	p.Gln590Ter	p.Q590*	ENST00000257566	NM_016569.3	590	Cag/Tag																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012331	176012331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1278	176	474	0	ENST00000367669.3:c.1603G>A	p.Asp535Asn	p.D535N	ENST00000367669	NM_022457.5	535	Gat/Aat																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564677	86564677	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	341	343	0	ENST00000274376.6:c.409C>G	p.Leu137Val	p.L137V	ENST00000274376	NM_002890.2	137	Ctg/Gtg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860485	151860485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	295	402	1	ENST00000262189.6:c.10177G>T	p.Glu3393Ter	p.E3393*	ENST00000262189	NM_170606.2	3393	Gaa/Taa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865468	57865468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	341	693	0	ENST00000228682.2:c.2945C>T	p.Ser982Leu	p.S982L	ENST00000228682	NM_005269.2	982	tCa/tTa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913942	32913942	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	503	673	0	ENST00000380152.3:c.5450C>G	p.Ser1817Cys	p.S1817C	ENST00000380152		1817	tCt/tGt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937315	32937315	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	107	245	0	ENST00000380152.3:c.7977-1G>A		p.X2659_splice	ENST00000380152		2659																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3832769	3832769	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	291	511	0	ENST00000262367.5:c.1489C>T	p.Gln497Ter	p.Q497*	ENST00000262367	NM_004380.2	497	Cag/Tag																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40458263	40458263	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	300	595	0	ENST00000345506.4:c.1478G>C	p.Arg493Thr	p.R493T	ENST00000345506	NM_003152.3	493	aGg/aCg																																																																															
AR	367	MSKCC	GRCh37	X	66942707	66942707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	123	670	0	ENST00000374690.3:c.2488G>A	p.Glu830Lys	p.E830K	ENST00000374690	NM_000044.3	830	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68862138	68862139	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	359	476	0	ENST00000261769.5:c.2231dup	p.Glu745ArgfsTer3	p.E745Rfs*3	ENST00000261769	NM_004360.3	742	-/C																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39584426	39584440	+	inframe_deletion	In_Frame_Del	DEL	TGGAGCTGTTATCCT	TGGAGCTGTTATCCT	-			P-0006335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	336	446	0	ENST00000262039.4:c.1091_1105del	p.Leu364_Ser368del	p.L364_S368del	ENST00000262039	NM_002647.2	364	tTGGAGCTGTTATCCTct/tct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089765	27089772	+	frameshift_variant	Frame_Shift_Del	DEL	TATCCAAA	TATCCAAA	G			P-0006335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			39	276	144	0	ENST00000324856.7:c.2721_2728delinsG	p.Ile908ThrfsTer9	p.I908Tfs*9	ENST00000324856	NM_006015.4	907	tcTATCCAAAac/tcGac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0006504-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			607	466	583	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205077	128205077	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006504-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			793	346	486	2	ENST00000341105.2:c.364T>A	p.Ser122Thr	p.S122T	ENST00000341105	NM_032638.4	122	Tcc/Acc																																																																															
TET2	54790	MSKCC	GRCh37	4	106193892	106193892	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006504-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			431	122	489	0	ENST00000380013.4:c.4354C>T	p.Arg1452Ter	p.R1452*	ENST00000380013	NM_001127208.2	1452	Cga/Tga																																																																															
FYN	2534	MSKCC	GRCh37	6	111983114	111983114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006504-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1684	413	605	1	ENST00000368678.4:c.1433G>A	p.Arg478Gln	p.R478Q	ENST00000368678		478	cGa/cAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993434	72993434	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006504-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			873	291	749	0	ENST00000268489.5:c.611T>G	p.Phe204Cys	p.F204C	ENST00000268489	NM_006885.3	204	tTc/tGc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246466	41246476	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCATGGCAG	GAGCATGGCAG	T			P-0006504-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			373	359	537	0	ENST00000357654.3:c.1072_1082delinsA	p.Leu358LysfsTer13	p.L358Kfs*13	ENST00000357654	NM_007294.3	358	CTGCCATGCTCa/Aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	72	158	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285715	87285715	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	203	533	8	ENST00000277120.3:c.52T>C	p.Phe18Leu	p.F18L	ENST00000277120		18	Ttc/Ctc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28963936	28963936	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0006584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	287	502	0	ENST00000282397.4:c.1966A>T	p.Arg656Ter	p.R656*	ENST00000282397	NM_002019.4	656	Aga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578502	7578502	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	635	439	0	ENST00000269305.4:c.428T>C	p.Val143Ala	p.V143A	ENST00000269305	NM_001126112.2	143	gTg/gCg																																																																															
APC	324	MSKCC	GRCh37	5	112162804	112162804	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	109	311	0	ENST00000257430.4:c.1409-1G>A		p.X470_splice	ENST00000257430	NM_000038.5	470																																																																																
EP300	2033	MSKCC	GRCh37	22	41569733	41569733	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs144547088		P-0006592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	349	491	0	ENST00000263253.7:c.4724A>G	p.Asn1575Ser	p.N1575S	ENST00000263253	NM_001429.3	1575	aAt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	90	463	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0006646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	58	313	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
APC	324	MSKCC	GRCh37	5	112170777	112170777	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	89	586	2	ENST00000257430.4:c.1873C>T	p.Gln625Ter	p.Q625*	ENST00000257430	NM_000038.5	625	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912200	114912200	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0006646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	125	609	0	ENST00000543371.1:c.1269+1G>A		p.X423_splice	ENST00000543371	NM_001198531.1	423																																																																																
PAX5	5079	MSKCC	GRCh37	9	37015108	37015109	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	96	476	0	ENST00000358127.4:c.295dupA	p.Ile99AsnfsTer3	p.I99Nfs*3	ENST00000358127	NM_001280556.1	99	atc/aAtc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0006681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	151	238	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47129662	47129662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	324	635	1	ENST00000409792.3:c.5218C>T	p.Arg1740Trp	p.R1740W	ENST00000409792	NM_014159.6	1740	Cgg/Tgg																																																																															
B2M	567	MSKCC	GRCh37	15	45007901	45007901	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0006681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	158	241	0	ENST00000558401.1:c.346+2T>C		p.X116_splice	ENST00000558401	NM_004048.2	116																																																																																
TP53	7157	MSKCC	GRCh37	17	7577125	7577133	+	inframe_deletion	In_Frame_Del	DEL	CTCAAAGCT	CTCAAAGCT	-			P-0006681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	312	587	0	ENST00000269305.4:c.805_813del	p.Ser269_Glu271del	p.S269_E271del	ENST00000269305	NM_001126112.2	269	AGCTTTGAG/-																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0006683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	15	306	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0006683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	32	269	4	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0006683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	21	206	1	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679171	88679172	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0006683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	24	465	0	ENST00000360948.2:c.864_865dup	p.Val289AlafsTer5	p.V289Afs*5	ENST00000360948	NM_001012338.2	289	gtg/gCGtg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910830	114910830	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	69	679	0	ENST00000543371.1:c.950del	p.Pro317GlnfsTer34	p.P317Qfs*34	ENST00000543371	NM_001198531.1	317	Cca/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578422	7578424	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0006683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	43	323	2	ENST00000269305.4:c.506_508del	p.Met169del	p.M169del	ENST00000269305	NM_001126112.2	169	aTGAcg/acg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0006685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	233	471	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
SMAD3	4088	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs794727798		P-0006685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	184	450	1	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0006685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	68	274	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971367	13971367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	162	399	0	ENST00000405192.2:c.562C>T	p.Arg188Cys	p.R188C	ENST00000405192	NM_001163147.1	188	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112174982	112174983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	81	326	0	ENST00000257430.4:c.3692dup	p.His1232ProfsTer8	p.H1232Pfs*8	ENST00000257430	NM_000038.5	1231	ctc/cTtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006798-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			913	51	413	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006798-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			704	70	580	0	ENST00000269305.4:c.742del	p.Arg248GlyfsTer97	p.R248Gfs*97	ENST00000269305	NM_001126112.2	248	Cgg/gg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41268766	41268766	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006999-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			266	153	626	2	ENST00000349496.5:c.1004A>T	p.Lys335Ile	p.K335I	ENST00000349496	NM_001904.3	335	aAa/aTa																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0006999-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			116	81	356	1	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579592	7579592	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0006999-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			66	68	312	0	ENST00000269305.4:c.97-2A>T		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157522452	157522452	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006999-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			352	20	521	0	ENST00000346085.5:c.4724T>C	p.Leu1575Pro	p.L1575P	ENST00000346085	NM_020732.3	1575	cTg/cCg																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30128603	30128604	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	AT	AT	TG			P-0006999-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			377	87	683	0	ENST00000263025.4:c.778_779delinsCA	p.Ile260His	p.I260H	ENST00000263025	NM_002746.2	260	ATc/CAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	70	283	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	266	402	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0007079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	122	473	1	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
EED	8726	MSKCC	GRCh37	11	85961399	85961399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	144	612	0	ENST00000263360.6:c.176C>T	p.Thr59Met	p.T59M	ENST00000263360	NM_003797.3	59	aCg/aTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42795187	42795187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	153	532	0	ENST00000575354.2:c.2267C>T	p.Ala756Val	p.A756V	ENST00000575354	NM_015125.3	756	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175424	112175425	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	104	382	0	ENST00000257430.4:c.4135dup	p.Glu1379GlyfsTer7	p.E1379Gfs*7	ENST00000257430	NM_000038.5	1378	cag/caGg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177023	56177023	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	111	370	0	ENST00000399503.3:c.2293T>A	p.Leu765Met	p.L765M	ENST00000399503	NM_005921.1	765	Ttg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0007080-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			372	1093	451	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007080-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			633	599	451	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112154963	112154963	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007080-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			795	484	398	0	ENST00000257430.4:c.1234C>T	p.Gln412Ter	p.Q412*	ENST00000257430	NM_000038.5	412	Cag/Tag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972992	25972992	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007080-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1111	123	424	1	ENST00000435504.4:c.1433T>A	p.Leu478His	p.L478H	ENST00000435504		478	cTt/cAt																																																																															
ARAF	369	MSKCC	GRCh37	X	47429386	47429386	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007080-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			930	128	477	0	ENST00000377045.4:c.1514G>C	p.Gly505Ala	p.G505A	ENST00000377045	NM_001654.4	505	gGc/gCc																																																																															
APC	324	MSKCC	GRCh37	5	112174834	112174834	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007080-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			808	321	473	0	ENST00000257430.4:c.3546del	p.Lys1182AsnfsTer83	p.K1182Nfs*83	ENST00000257430	NM_000038.5	1181	ttA/tt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144589	55144589	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007080-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	142	465	0	ENST00000257290.5:c.2063A>C	p.Lys688Thr	p.K688T	ENST00000257290	NM_006206.4	688	aAg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0007081-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			349	471	655	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
NTRK2	4915	MSKCC	GRCh37	9	87482242	87482242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007081-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			579	447	641	0	ENST00000277120.3:c.1529C>T	p.Ser510Leu	p.S510L	ENST00000277120		510	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112175389	112175390	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGACAC			P-0007081-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			582	147	424	0	ENST00000257430.4:c.4100_4106dup	p.Lys1370AspfsTer7	p.K1370Dfs*7	ENST00000257430	NM_000038.5	1366	-/CAGACAC																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0007084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			89	55	141	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0007084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			112	47	178	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241726	55241726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			155	105	226	0	ENST00000275493.2:c.2174C>T	p.Thr725Met	p.T725M	ENST00000275493	NM_005228.3	725	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0007084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			313	86	372	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715625	30715625	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			324	49	276	0	ENST00000359013.4:c.1358A>G	p.Glu453Gly	p.E453G	ENST00000359013	NM_001024847.2	453	gAa/gGa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55087007	55087007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			82	75	190	0	ENST00000275493.2:c.37G>A	p.Ala13Thr	p.A13T	ENST00000275493	NM_005228.3	13	Gcg/Acg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38274934	38274934	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			191	30	324	0	ENST00000425967.3:c.1646C>T	p.Ser549Leu	p.S549L	ENST00000425967	NM_001174067.1	549	tCg/tTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905325	50905325	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			154	39	372	1	ENST00000440232.2:c.533G>T	p.Gly178Val	p.G178V	ENST00000440232	NM_002691.3	178	gGg/gTg																																																																															
MAX	4149	MSKCC	GRCh37	14	65560491	65560496	+	inframe_deletion	In_Frame_Del	DEL	TACGTT	TACGTT	-			P-0007084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			198	72	344	0	ENST00000358664.4:c.101_106del	p.Lys34_Arg35del	p.K34_R35del	ENST00000358664	NM_002382.4	34	aAACGTAgg/agg																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0007085-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			706	302	292	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175749	112175750	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007085-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			839	58	282	0	ENST00000257430.4:c.4459dup	p.Thr1487AsnfsTer27	p.T1487Nfs*27	ENST00000257430	NM_000038.5	1486	-/A																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056053	26056067	+	inframe_deletion	In_Frame_Del	DEL	CCTTGGGCTTAGCGG	CCTTGGGCTTAGCGG	-	rs756916945		P-0007085-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			663	231	168	0	ENST00000343677.2:c.590_604del	p.Ala197_Lys201del	p.A197_K201del	ENST00000343677	NM_005319.3	197	gCCGCTAAGCCCAAGGtt/gtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007085-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			492	227	245	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30325831	30325831	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007085-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1050	329	345	0	ENST00000322652.5:c.2029G>C	p.Ala677Pro	p.A677P	ENST00000322652	NM_015355.2	677	Gct/Cct																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027006	71027007	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007085-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			673	117	198	0	ENST00000318789.4:c.1320dup	p.Asp441ArgfsTer20	p.D441Rfs*20	ENST00000318789	NM_032682.5	440	-/A																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0007088-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			711	240	340	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0007088-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			569	396	264	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0007088-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			345	178	252	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
EGFR	1956	MSKCC	GRCh37	7	55241672	55241672	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007088-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			667	454	294	0	ENST00000275493.2:c.2120T>G	p.Leu707Trp	p.L707W	ENST00000275493	NM_005228.3	707	tTg/tGg																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154357	2154357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007088-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			292	430	301	0	ENST00000434045.2:c.571C>T	p.Arg191Cys	p.R191C	ENST00000434045	NM_001127598.1	191	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057936	27057937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007089-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			153	77	304	0	ENST00000324856.7:c.1650dupC	p.Tyr551LeufsTer72	p.Y551Lfs*72	ENST00000324856	NM_006015.4	548	-/C																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115888	8115889	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007089-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			295	161	432	1	ENST00000346208.3:c.1236dupC	p.Ser413GlnfsTer94	p.S413Qfs*94	ENST00000346208		412	tcc/tCcc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367867	15367867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007089-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			89	135	347	1	ENST00000263377.2:c.1459G>A	p.Asp487Asn	p.D487N	ENST00000263377	NM_058243.2	487	Gac/Aac																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739958	41739958	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007089-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			190	104	525	0	ENST00000242208.4:c.15G>C	p.Trp5Cys	p.W5C	ENST00000242208	NM_002192.2	5	tgG/tgC																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244722	46244722	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007089-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			234	231	542	0	ENST00000334344.6:c.2816A>C	p.Tyr939Ser	p.Y939S	ENST00000334344	NM_152641.2	939	tAt/tCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0007090-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			375	127	1324	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007090-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			902	179	932	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007090-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			592	117	654	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0007090-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			717	78	1034	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007090-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			521	57	878	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661035	227661035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007289-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			261	32	183	0	ENST00000305123.5:c.2420C>A	p.Ser807Tyr	p.S807Y	ENST00000305123	NM_005544.2	807	tCt/tAt																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73775219	73775219	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007289-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1162	247	454	0	ENST00000254810.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000254810	NM_005324.3	13	Ggt/Cgt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	30954226	30954226	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007289-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			533	129	333	0	ENST00000375687.4:c.97C>G	p.Gln33Glu	p.Q33E	ENST00000375687	NM_015338.5	33	Cag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7576926	7576947	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTAGGAAAGAGGCAAGGAAAG	GCTAGGAAAGAGGCAAGGAAAG	-			P-0007289-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			45	229	274	0	ENST00000269305.4:c.920-21_920del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
EIF4A2	1974	MSKCC	GRCh37	3	186507000	186507001	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GACTTTCT			P-0007289-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1220	194	527	0	ENST00000323963.5:c.1167_1174dup	p.Tyr392Ter	p.Y392*	ENST00000323963		389	gag/gaGACTTTCTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	217	434	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0007294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	212	476	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	259	431	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
FH	2271	MSKCC	GRCh37	1	241680531	241680531	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	225	491	0	ENST00000366560.3:c.218T>C	p.Val73Ala	p.V73A	ENST00000366560	NM_000143.3	73	gTg/gCg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523486	106523486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	129	345	0	ENST00000359195.3:c.2638G>A	p.Glu880Lys	p.E880K	ENST00000359195	NM_002649.2	880	Gag/Aag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120450	70120451	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	405	727	0	ENST00000245479.2:c.1456dupG	p.Val486GlyfsTer92	p.V486Gfs*92	ENST00000245479	NM_000346.3	484	-/G																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729147	66729147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	102	654	2	ENST00000307102.5:c.355C>T	p.His119Tyr	p.H119Y	ENST00000307102	NM_002755.3	119	Cat/Tat																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	132	659	7	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	166	526	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	163	534	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	100	182	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	156	562	3	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	81	512	2	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	117	542	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	101	591	5	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
NF1	4763	MSKCC	GRCh37	17	29654820	29654820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	89	380	1	ENST00000358273.4:c.5572G>A	p.Ala1858Thr	p.A1858T	ENST00000358273	NM_001042492.2	1858	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112173669	112173670	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	120	478	0	ENST00000257430.4:c.2379_2380del	p.Tyr796TrpfsTer2	p.Y796Wfs*2	ENST00000257430	NM_000038.5	793	cAA/c																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030326	180030326	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150279372		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	149	689	1	ENST00000261937.6:c.3958C>T	p.Arg1320Trp	p.R1320W	ENST00000261937	NM_182925.4	1320	Cgg/Tgg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	187	964	3	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	171	763	2	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	64	365	1	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	187	764	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	102	517	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165327	47165327	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs186148199		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	134	492	0	ENST00000409792.3:c.799G>A	p.Val267Ile	p.V267I	ENST00000409792	NM_014159.6	267	Gta/Ata																																																																															
HRAS	3265	MSKCC	GRCh37	11	533838	533838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	152	596	0	ENST00000311189.7:c.218G>A	p.Arg73His	p.R73H	ENST00000311189		73	cGc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779210	3779211	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	36	305	0	ENST00000262367.5:c.5837dup	p.Pro1947ThrfsTer19	p.P1947Tfs*19	ENST00000262367	NM_004380.2	1946	cca/ccCa																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	211	980	3	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180055919	180055919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	81	559	1	ENST00000261937.6:c.1066G>A	p.Val356Met	p.V356M	ENST00000261937	NM_182925.4	356	Gtg/Atg																																																																															
JUN	3725	MSKCC	GRCh37	1	59247894	59247894	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	272	888	1	ENST00000371222.2:c.849del	p.Val284Ter	p.V284*	ENST00000371222	NM_002228.3	283	aaA/aa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9783217	9783217	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140820694		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	110	536	0	ENST00000377346.4:c.2461C>T	p.Arg821Cys	p.R821C	ENST00000377346	NM_005026.3	821	Cgc/Tgc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11272533	11272533	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	23	305	0	ENST00000361445.4:c.3399-2A>G		p.X1133_splice	ENST00000361445	NM_004958.3	1133																																																																																
MTOR	2475	MSKCC	GRCh37	1	11300450	11300450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	156	531	0	ENST00000361445.4:c.1696G>A	p.Ala566Thr	p.A566T	ENST00000361445	NM_004958.3	566	Gcc/Acc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027071	48027071	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	35	615	0	ENST00000234420.5:c.1949G>A	p.Gly650Asp	p.G650D	ENST00000234420	NM_000179.2	650	gGc/gAc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661129	227661129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781654199		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	163	697	4	ENST00000305123.5:c.2326C>T	p.Arg776Cys	p.R776C	ENST00000305123	NM_005544.2	776	Cgc/Tgc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37053348	37053348	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	130	524	0	ENST00000231790.2:c.583A>T	p.Lys195Ter	p.K195*	ENST00000231790	NM_000249.3	195	Aaa/Taa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067170	37067170	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	87	415	0	ENST00000231790.2:c.1081A>T	p.Lys361Ter	p.K361*	ENST00000231790	NM_000249.3	361	Aaa/Taa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067474	37067474	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	112	438	0	ENST00000231790.2:c.1385G>T	p.Arg462Ile	p.R462I	ENST00000231790	NM_000249.3	462	aGa/aTa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247444	71247444	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	106	509	0	ENST00000318789.4:c.89G>T	p.Gly30Val	p.G30V	ENST00000318789	NM_032682.5	30	gGc/gTc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139841	55139841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	125	550	0	ENST00000257290.5:c.1502G>A	p.Cys501Tyr	p.C501Y	ENST00000257290	NM_006206.4	501	tGc/tAc																																																																															
SDHA	6389	MSKCC	GRCh37	5	236591	236591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	42	156	0	ENST00000264932.6:c.1309G>A	p.Ala437Thr	p.A437T	ENST00000264932	NM_004168.2	437	Gcc/Acc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86627257	86627257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	72	550	3	ENST00000274376.6:c.632G>A	p.Arg211Gln	p.R211Q	ENST00000274376	NM_002890.2	211	cGg/cAg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176671271	176671271	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	48	526	0	ENST00000439151.2:c.4378G>T	p.Gly1460Cys	p.G1460C	ENST00000439151	NM_022455.4	1460	Ggc/Tgc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910638	29910638	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	53	630	0	ENST00000376809.5:c.178T>C	p.Phe60Leu	p.F60L	ENST00000376809	NM_002116.7	60	Ttc/Ctc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910755	29910755	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	62	829	0	ENST00000376809.5:c.295C>T	p.Arg99Ter	p.R99*	ENST00000376809	NM_002116.7	99	Cga/Tga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180680	32180680	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	48	709	0	ENST00000375023.3:c.2447G>T	p.Arg816Met	p.R816M	ENST00000375023	NM_004557.3	816	aGg/aTg																																																																															
ABL1	25	MSKCC	GRCh37	9	133759976	133759976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	48	785	0	ENST00000318560.5:c.2299G>A	p.Ala767Thr	p.A767T	ENST00000318560	NM_005157.4	767	Gca/Aca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396942	139396942	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	34	142	0	ENST00000277541.6:c.5168-2A>G		p.X1723_splice	ENST00000277541	NM_017617.3	1723																																																																																
TET1	80312	MSKCC	GRCh37	10	70450964	70450964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	110	382	1	ENST00000373644.4:c.5804C>T	p.Thr1935Met	p.T1935M	ENST00000373644	NM_030625.2	1935	aCg/aTg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123325150	123325150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	178	523	1	ENST00000358487.5:c.178G>A	p.Val60Met	p.V60M	ENST00000358487	NM_000141.4	60	Gtg/Atg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138858	64138858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	78	376	2	ENST00000334205.4:c.2225G>A	p.Arg742His	p.R742H	ENST00000334205	NM_003942.2	742	cGc/cAc																																																																															
CCND2	894	MSKCC	GRCh37	12	4383301	4383301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	69	514	0	ENST00000261254.3:c.95C>T	p.Thr32Ile	p.T32I	ENST00000261254	NM_001759.3	32	aCc/aTc																																																																															
ETV6	2120	MSKCC	GRCh37	12	11905406	11905406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	39	422	0	ENST00000396373.4:c.56C>A	p.Pro19His	p.P19H	ENST00000396373	NM_001987.4	19	cCt/cAt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244911	46244911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	131	618	0	ENST00000334344.6:c.3005C>T	p.Thr1002Ile	p.T1002I	ENST00000334344	NM_152641.2	1002	aCt/aTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435998	49435998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	91	475	1	ENST00000301067.7:c.5983G>A	p.Gly1995Arg	p.G1995R	ENST00000301067	NM_003482.3	1995	Gga/Aga																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431367	121431367	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	72	491	0	ENST00000257555.6:c.571G>T	p.Gly191Cys	p.G191C	ENST00000257555		191	Ggt/Tgt																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30133315	30133315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	63	931	0	ENST00000263025.4:c.183C>A	p.Asp61Glu	p.D61E	ENST00000263025	NM_002746.2	61	gaC/gaA																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654610	67654610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	140	576	0	ENST00000264010.4:c.1097T>C	p.Leu366Ser	p.L366S	ENST00000264010	NM_006565.3	366	tTa/tCa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923666	72923666	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	170	765	0	ENST00000268489.5:c.3412A>T	p.Ile1138Phe	p.I1138F	ENST00000268489	NM_006885.3	1138	Atc/Ttc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348493	89348493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	157	969	0	ENST00000301030.4:c.4457G>A	p.Arg1486Gln	p.R1486Q	ENST00000301030	NM_001256183.1	1486	cGg/cAg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217629	7217629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	125	706	0	ENST00000380728.2:c.298C>T	p.Arg100Trp	p.R100W	ENST00000380728		100	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577093	7577093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	86	655	1	ENST00000269305.4:c.845G>T	p.Arg282Leu	p.R282L	ENST00000269305	NM_001126112.2	282	cGg/cTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29586143	29586143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	32	337	0	ENST00000358273.4:c.4426C>T	p.Arg1476Cys	p.R1476C	ENST00000358273	NM_001042492.2	1476	Cgc/Tgc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2214549	2214549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	205	789	1	ENST00000398665.3:c.1877T>C	p.Leu626Pro	p.L626P	ENST00000398665	NM_032482.2	626	cTg/cCg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10244923	10244923	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	153	725	0	ENST00000340748.4:c.4786A>G	p.Met1596Val	p.M1596V	ENST00000340748		1596	Atg/Gtg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10260539	10260539	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	141	634	1	ENST00000340748.4:c.2323T>C	p.Tyr775His	p.Y775H	ENST00000340748		775	Tat/Cat																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281592	15281592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	136	824	2	ENST00000263388.2:c.4781C>T	p.Ser1594Leu	p.S1594L	ENST00000263388	NM_000435.2	1594	tCg/tTg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19261495	19261495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	140	657	5	ENST00000162023.5:c.50G>A	p.Arg17Gln	p.R17Q	ENST00000162023		17	cGg/cAg																																																																															
CIC	23152	MSKCC	GRCh37	19	42791392	42791392	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1349864904		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	171	596	2	ENST00000575354.2:c.452C>T	p.Ala151Val	p.A151V	ENST00000575354	NM_015125.3	151	gCc/gTc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45856056	45856056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	34	502	0	ENST00000391945.4:c.1850C>T	p.Ala617Val	p.A617V	ENST00000391945	NM_000400.3	617	gCc/gTc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867286	45867286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	73	228	1	ENST00000391945.4:c.907G>A	p.Ala303Thr	p.A303T	ENST00000391945	NM_000400.3	303	Gcc/Acc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868176	45868176	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140175332		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	133	616	0	ENST00000391945.4:c.514G>A	p.Ala172Thr	p.A172T	ENST00000391945	NM_000400.3	172	Gct/Act																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868194	45868194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	77	573	2	ENST00000391945.4:c.496C>T	p.Arg166Cys	p.R166C	ENST00000391945	NM_000400.3	166	Cgt/Tgt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31389092	31389092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	127	441	0	ENST00000328111.2:c.2005G>T	p.Gly669Cys	p.G669C	ENST00000328111	NM_006892.3	669	Ggc/Tgc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29092948	29092948	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201206424		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	131	501	0	ENST00000328354.6:c.1036C>T	p.Arg346Cys	p.R346C	ENST00000328354	NM_007194.3	346	Cgt/Tgt																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20150318	20150318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	173	590	0	ENST00000379607.5:c.319G>A	p.Gly107Ser	p.G107S	ENST00000379607	NM_001412.3	107	Ggc/Agc																																																																															
ARAF	369	MSKCC	GRCh37	X	47430836	47430836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	102	666	0	ENST00000377045.4:c.1801G>A	p.Ala601Thr	p.A601T	ENST00000377045	NM_001654.4	601	Gca/Aca																																																																															
XIAP	331	MSKCC	GRCh37	X	123019820	123019820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	145	449	0	ENST00000355640.3:c.308C>T	p.Thr103Met	p.T103M	ENST00000355640		103	aCg/aTg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621851	1621852	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	35	679	0	ENST00000344749.5:c.940dup	p.Ala314GlyfsTer35	p.A314Gfs*35	ENST00000344749	NM_001136139.2	314	gcc/gGcc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720665	89720666	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	53	105	0	ENST00000371953.3:c.820dupT	p.Trp274LeufsTer24	p.W274Lfs*24	ENST00000371953	NM_000314.4	272	-/T																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099889	157099890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	201	668	0	ENST00000346085.5:c.831dup	p.Gly278ArgfsTer257	p.G278Rfs*257	ENST00000346085	NM_020732.3	276	gcc/gCcc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	464333	464334	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	44	726	0	ENST00000399788.2:c.860_861del	p.Ser287CysfsTer2	p.S287Cfs*2	ENST00000399788	NM_001042603.1	287	tCT/t																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31394066	31394066	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	37	497	0	ENST00000328111.2:c.2357del	p.Asn786ThrfsTer8	p.N786Tfs*8	ENST00000328111	NM_006892.3	785	Aaa/aa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271747	15271747	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	90	527	1	ENST00000263388.2:c.6692del	p.Pro2231GlnfsTer15	p.P2231Qfs*15	ENST00000263388	NM_000435.2	2231	cCa/ca																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			24	10	13	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
MET	4233	MSKCC	GRCh37	7	116403181	116403182	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	147	426	0	ENST00000397752.3:c.2442_2443insA	p.Leu815ThrfsTer18	p.L815Tfs*18	ENST00000397752	NM_000245.2	814	-/A																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157469772	157469772	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	163	636	0	ENST00000346085.5:c.2570del	p.Pro857GlnfsTer57	p.P857Qfs*57	ENST00000346085	NM_020732.3	856	Ccc/cc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665446	138665446	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	15	306	0	ENST00000330315.3:c.119del	p.Gly40ValfsTer110	p.G40Vfs*110	ENST00000330315	NM_023067.3	40	gGt/gt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615698	1615698	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	81	1152	1	ENST00000344749.5:c.1573delC	p.Arg525GlyfsTer18	p.R525Gfs*18	ENST00000344749	NM_001136139.2	525	Cgg/gg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29099524	29099525	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	49	561	1	ENST00000328354.6:c.876dupT	p.Asp293Ter	p.D293*	ENST00000328354	NM_007194.3	292	-/T																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845787	151845789	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	83	541	0	ENST00000262189.6:c.13223_13225del	p.Glu4408del	p.E4408del	ENST00000262189	NM_170606.2	4408	gAAGgt/ggt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138915	64138915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	44	333	0	ENST00000334205.4:c.2287delC	p.Arg763AlafsTer21	p.R763Afs*21	ENST00000334205	NM_003942.2	761	gCc/gc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081568	143081569	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	132	593	0	ENST00000262992.4:c.1505dup	p.Val503SerfsTer15	p.V503Sfs*15	ENST00000262992	NM_001101669.1	502	cca/ccCa																																																																															
FANCC	2176	MSKCC	GRCh37	9	98003011	98003011	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	90	440	3	ENST00000289081.3:c.265del	p.Ile89PhefsTer2	p.I89Ffs*2	ENST00000289081	NM_000136.2	89	Att/tt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510197	187510197	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	185	792	0	ENST00000441802.2:c.13316delC	p.Pro4439GlnfsTer48	p.P4439Qfs*48	ENST00000441802	NM_005245.3	4439	cCa/ca																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508725	106508725	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	128	449	0	ENST00000359195.3:c.723del	p.Gly242AlafsTer17	p.G242Afs*17	ENST00000359195	NM_002649.2	240	aCc/ac																																																																															
APC	324	MSKCC	GRCh37	5	112178033	112178033	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	170	639	0	ENST00000257430.4:c.6747del	p.Gly2250AlafsTer29	p.G2250Afs*29	ENST00000257430	NM_000038.5	2248	Aaa/aa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251912	153251912	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	94	523	0	ENST00000281708.4:c.1094G>A	p.Trp365Ter	p.W365*	ENST00000281708	NM_033632.3	365	tGg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577560	7577568	+	inframe_deletion	In_Frame_Del	DEL	AACTGTTAC	AACTGTTAC	-			P-0007334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	84	440	0	ENST00000269305.4:c.713_721del	p.Cys238_Ser240del	p.C238_S240del	ENST00000269305	NM_001126112.2	238	tGTAACAGTTcc/tcc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589617	67589628	+	inframe_deletion	In_Frame_Del	DEL	TCGAGAATATGA	TCGAGAATATGA	-			P-0007334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	56	366	0	ENST00000274335.5:c.1381_1392del	p.Glu462_Arg465del	p.E462_R465del	ENST00000274335		460	agTCGAGAATATGAt/agt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11958231	11958231	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	40	206	0	ENST00000353533.5:c.144del	p.Phe48LeufsTer14	p.F48Lfs*14	ENST00000353533	NM_003010.3	47	aaT/aa																																																																															
APC	324	MSKCC	GRCh37	5	112154967	112154968	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	222	494	0	ENST00000257430.4:c.1239dup	p.Arg414ThrfsTer5	p.R414Tfs*5	ENST00000257430	NM_000038.5	413	ata/atAa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0007368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	85	478	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0007368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	61	403	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0007368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	95	596	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519456	176519456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	92	602	0	ENST00000292408.4:c.862G>A	p.Val288Ile	p.V288I	ENST00000292408	NM_213647.1	288	Gtc/Atc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12037445	12037445	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	182	497	0	ENST00000396373.4:c.1076G>T	p.Arg359Leu	p.R359L	ENST00000396373	NM_001987.4	359	cGa/cTa																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	87	477	0	ENST00000257430.4:c.4285del	p.Gln1429LysfsTer44	p.Q1429Kfs*44	ENST00000257430	NM_000038.5	1429	Caa/aa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120114	70120115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0007368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			41	24	65	0	ENST00000245479.2:c.1120_1121dup	p.Gln375ArgfsTer9	p.Q375Rfs*9	ENST00000245479	NM_000346.3	372	-/CC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0007373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	92	454	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0007373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	130	500	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467500	66467500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	157	477	1	ENST00000273854.3:c.769G>A	p.Glu257Lys	p.E257K	ENST00000273854	NM_004439.5	257	Gaa/Aaa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245945	46245945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	113	425	0	ENST00000334344.6:c.4039C>A	p.Gln1347Lys	p.Q1347K	ENST00000334344	NM_152641.2	1347	Caa/Aaa																																																																															
AR	367	MSKCC	GRCh37	X	66765736	66765736	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	90	372	0	ENST00000374690.3:c.748G>T	p.Gly250Cys	p.G250C	ENST00000374690	NM_000044.3	250	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007377-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			49	452	371	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925316	114925317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769592153		P-0007377-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			258	753	718	19	ENST00000543371.1:c.1403dup	p.Cys469ValfsTer8	p.C469Vfs*8	ENST00000543371	NM_001198531.1	465	aga/agAa																																																																															
APC	324	MSKCC	GRCh37	5	112175756	112175756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007377-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			230	215	386	1	ENST00000257430.4:c.4466del	p.Leu1489TyrfsTer18	p.L1489Yfs*18	ENST00000257430	NM_000038.5	1489	Tta/ta																																																																															
APC	324	MSKCC	GRCh37	5	112155031	112155032	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007377-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			294	197	373	0	ENST00000257430.4:c.1307dup	p.Asn436LysfsTer8	p.N436Kfs*8	ENST00000257430	NM_000038.5	434	-/A																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445008	89445008	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007377-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			571	265	476	1	ENST00000336596.2:c.1328T>C	p.Ile443Thr	p.I443T	ENST00000336596	NM_005233.5	443	aTt/aCt																																																																															
HGF	3082	MSKCC	GRCh37	7	81350071	81350071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007377-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1138	286	594	0	ENST00000222390.5:c.1261G>T	p.Asp421Tyr	p.D421Y	ENST00000222390	NM_000601.4	421	Gac/Tac																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589692	69589692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007377-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			113	88	219	0	ENST00000168712.1:c.161C>T	p.Ser54Leu	p.S54L	ENST00000168712	NM_002007.2	54	tCg/tTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68835687	68835687	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007377-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			956	377	745	1	ENST00000261769.5:c.278A>G	p.Asn93Ser	p.N93S	ENST00000261769	NM_004360.3	93	aAc/aGc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17950432	17950432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007377-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			424	238	391	0	ENST00000458235.1:c.1295G>A	p.Arg432His	p.R432H	ENST00000458235	NM_000215.3	432	cGc/cAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31020700	31020700	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007377-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	215	410	1	ENST00000375687.4:c.997A>T	p.Met333Leu	p.M333L	ENST00000375687	NM_015338.5	333	Atg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0007483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	62	207	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175621	112175621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	126	319	1	ENST00000257430.4:c.4330C>T	p.Gln1444Ter	p.Q1444*	ENST00000257430	NM_000038.5	1444	Caa/Taa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11259328	11259328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	81	225	0	ENST00000361445.4:c.4240G>A	p.Glu1414Lys	p.E1414K	ENST00000361445	NM_004958.3	1414	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175449	112175449	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	58	163	0	ENST00000257430.4:c.4158A>T	p.Arg1386Ser	p.R1386S	ENST00000257430	NM_000038.5	1386	agA/agT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845262	151845262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	48	139	0	ENST00000262189.6:c.13750C>T	p.Arg4584Trp	p.R4584W	ENST00000262189	NM_170606.2	4584	Cgg/Tgg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401342	139401342	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	64	190	0	ENST00000277541.6:c.3727A>G	p.Thr1243Ala	p.T1243A	ENST00000277541	NM_017617.3	1243	Acc/Gcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434889	49434889	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	22	136	0	ENST00000301067.7:c.6664C>T	p.Gln2222Ter	p.Q2222*	ENST00000301067	NM_003482.3	2222	Cag/Tag																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223813	2223813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	49	203	0	ENST00000326181.6:c.1111C>T	p.Arg371Trp	p.R371W	ENST00000326181	NM_032271.2	371	Cgg/Tgg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561495	9561495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146341429		P-0007483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	103	159	1	ENST00000353224.5:c.287G>A	p.Arg96His	p.R96H	ENST00000353224	NM_177990.2	96	cGc/cAc																																																																															
AR	367	MSKCC	GRCh37	X	66765350	66765350	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	89	120	0	ENST00000374690.3:c.362C>A	p.Ser121Ter	p.S121*	ENST00000374690	NM_000044.3	121	tCg/tAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0007486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	108	217	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0007486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	101	152	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
MST1R	4486	MSKCC	GRCh37	3	49940127	49940127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	187	353	1	ENST00000296474.3:c.916C>T	p.Arg306Cys	p.R306C	ENST00000296474	NM_002447.2	306	Cgc/Tgc																																																																															
PGR	5241	MSKCC	GRCh37	11	100933389	100933389	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	56	457	1	ENST00000325455.5:c.2001A>T	p.Gln667His	p.Q667H	ENST00000325455	NM_001202474.3	667	caA/caT																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974936	15974936	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	169	279	0	ENST00000268712.3:c.3939del	p.Lys1313AsnfsTer48	p.K1313Nfs*48	ENST00000268712	NM_006311.3	1313	aaA/aa																																																																															
APC	324	MSKCC	GRCh37	5	112174590	112174590	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	155	276	0	ENST00000257430.4:c.3299del	p.Ser1100PhefsTer26	p.S1100Ffs*26	ENST00000257430	NM_000038.5	1100	tCt/tt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	11	122	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	39	237	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180038479	180038479	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0007488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	21	185	0	ENST00000261937.6:c.3538G>A	p.Glu1180Lys	p.E1180K	ENST00000261937	NM_182925.4	1180	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0007489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	154	491	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0007489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			43	113	243	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198264983	198264983	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	14	246	0	ENST00000335508.6:c.2894G>C	p.Cys965Ser	p.C965S	ENST00000335508	NM_012433.2	965	tGt/tCt																																																																															
POLE	5426	MSKCC	GRCh37	12	133226290	133226291	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0007489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	24	345	0	ENST00000320574.5:c.3767_3768del	p.Gly1256AlafsTer98	p.G1256Afs*98	ENST00000320574	NM_006231.2	1256	gGG/g																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593525	48593526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			33	65	220	0	ENST00000342988.3:c.1278dup	p.His427SerfsTer2	p.H427Sfs*2	ENST00000342988	NM_005359.5	426	gtt/gTtt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	98	270	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	45	223	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	63	244	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562363	21562363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	65	211	0	ENST00000382592.4:c.1556C>T	p.Pro519Leu	p.P519L	ENST00000382592	NM_014572.2	519	cCg/cTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411291	63411291	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	119	423	0	ENST00000330258.3:c.1876C>T	p.Arg626Ter	p.R626*	ENST00000330258	NM_152424.3	626	Cga/Tga																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737329	145737329	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	98	338	0	ENST00000428558.2:c.3358G>C	p.Glu1120Gln	p.E1120Q	ENST00000428558	NM_004260.3	1120	Gag/Cag																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41239868	41239868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	103	275	0	ENST00000379561.5:c.482G>A	p.Gly161Asp	p.G161D	ENST00000379561	NM_002015.3	161	gGc/gAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435312	56435312	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139405076		P-0007554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	92	195	0	ENST00000407977.2:c.1825C>T	p.Arg609Trp	p.R609W	ENST00000407977		609	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604731	48604731	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	94	289	0	ENST00000342988.3:c.1553T>A	p.Ile518Asn	p.I518N	ENST00000342988	NM_005359.5	518	aTc/aAc																																																																															
XIAP	331	MSKCC	GRCh37	X	123020108	123020108	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	170	467	0	ENST00000355640.3:c.596A>C	p.Gln199Pro	p.Q199P	ENST00000355640		199	cAg/cCg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118720	115118721	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0007554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	92	402	0	ENST00000257566.3:c.620_621del	p.Leu207GlnfsTer19	p.L207Qfs*19	ENST00000257566	NM_016569.3	207	cTG/c																																																																															
APC	324	MSKCC	GRCh37	5	112175686	112175686	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	74	325	0	ENST00000257430.4:c.4395del	p.Ser1465ArgfsTer8	p.S1465Rfs*8	ENST00000257430	NM_000038.5	1465	agT/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0007590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	89	355	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578213	7578214	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-	rs1131691030		P-0007590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	247	501	2	ENST00000269305.4:c.635_636del	p.Phe212SerfsTer3	p.F212Sfs*3	ENST00000269305	NM_001126112.2	212	tTT/t																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0007590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	118	279	1	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879673	151879673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	11	116	0	ENST00000262189.6:c.5272C>T	p.Arg1758Cys	p.R1758C	ENST00000262189	NM_170606.2	1758	Cgt/Tgt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967242	93967242	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0007590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	96	356	0	ENST00000369303.4:c.2111-1G>T		p.X704_splice	ENST00000369303	NM_004440.3	704																																																																																
HGF	3082	MSKCC	GRCh37	7	81355310	81355310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	180	371	0	ENST00000222390.5:c.1064G>A	p.Arg355Gln	p.R355Q	ENST00000222390	NM_000601.4	355	cGa/cAa																																																																															
POLE	5426	MSKCC	GRCh37	12	133252748	133252748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	93	362	0	ENST00000320574.5:c.952G>A	p.Glu318Lys	p.E318K	ENST00000320574	NM_006231.2	318	Gaa/Aaa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117957	70117957	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	69	127	0	ENST00000245479.2:c.425T>G	p.Leu142Arg	p.L142R	ENST00000245479	NM_000346.3	142	cTc/cGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	128	283	0	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0007591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	207	307	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0007591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	197	269	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0007591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	235	346	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14014221	14014221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	113	139	0	ENST00000311895.7:c.199G>A	p.Ala67Thr	p.A67T	ENST00000311895	NM_005236.2	67	Gcc/Acc																																																																															
MED12	9968	MSKCC	GRCh37	X	70347225	70347225	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1308	328	635	0	ENST00000374080.3:c.2889T>A	p.Asp963Glu	p.D963E	ENST00000374080		963	gaT/gaA																																																																															
ATRX	546	MSKCC	GRCh37	X	76918999	76918999	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	390	524	0	ENST00000373344.5:c.3992C>A	p.Ser1331Tyr	p.S1331Y	ENST00000373344	NM_000489.3	1331	tCt/tAt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0007592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	72	296	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0007592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	272	343	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0007592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	347	378	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	198	350	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0007592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	160	218	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112173656	112173656	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	176	332	0	ENST00000257430.4:c.2365C>T	p.Gln789Ter	p.Q789*	ENST00000257430	NM_000038.5	789	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114905771	114905771	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0007592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	303	529	3	ENST00000543371.1:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000543371	NM_001198531.1	264	Caa/Taa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552647	18552647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	285	490	0	ENST00000266497.5:c.2058T>A	p.Asn686Lys	p.N686K	ENST00000266497		686	aaT/aaA																																																																															
APC	324	MSKCC	GRCh37	5	112176024	112176024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	263	263	0	ENST00000257430.4:c.4733del	p.Cys1578LeufsTer72	p.C1578Lfs*72	ENST00000257430	NM_000038.5	1578	tGt/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	89	295	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	45	195	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0007593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	194	238	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519446	137519446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	37	180	1	ENST00000367739.4:c.1192C>T	p.His398Tyr	p.H398Y	ENST00000367739	NM_000416.2	398	Cac/Tac																																																																															
AR	367	MSKCC	GRCh37	X	66766238	66766238	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1327366080		P-0007593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	70	173	0	ENST00000374690.3:c.1250C>T	p.Ala417Val	p.A417V	ENST00000374690	NM_000044.3	417	gCg/gTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81346550	81346550	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs148293411		P-0007593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	58	276	0	ENST00000222390.5:c.1403G>A	p.Arg468His	p.R468H	ENST00000222390	NM_000601.4	468	cGt/cAt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468158	50468158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	93	190	0	ENST00000331340.3:c.1393G>A	p.Glu465Lys	p.E465K	ENST00000331340	NM_006060.4	465	Gaa/Aaa																																																																															
BCL6	604	MSKCC	GRCh37	3	187442854	187442854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867576130		P-0007593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	8	149	0	ENST00000232014.4:c.1852C>T	p.Arg618Cys	p.R618C	ENST00000232014	NM_001130845.1	618	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112174058	112174058	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	44	295	0	ENST00000257430.4:c.2767A>T	p.Arg923Ter	p.R923*	ENST00000257430	NM_000038.5	923	Aga/Tga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166872	32166872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	90	153	0	ENST00000375023.3:c.4366G>A	p.Gly1456Arg	p.G1456R	ENST00000375023	NM_004557.3	1456	Ggg/Agg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943692	9943692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	56	269	0	ENST00000330684.3:c.1249G>A	p.Val417Ile	p.V417I	ENST00000330684	NM_001134407.1	417	Gtc/Atc																																																																															
CIC	23152	MSKCC	GRCh37	19	42794655	42794655	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	42	241	0	ENST00000575354.2:c.1739del	p.Gly580ValfsTer148	p.G580Vfs*148	ENST00000575354	NM_015125.3	579	Ggg/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	82	226	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0007631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	319	311	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174670	112174670	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	210	404	0	ENST00000257430.4:c.3379C>T	p.Gln1127Ter	p.Q1127*	ENST00000257430	NM_000038.5	1127	Cag/Tag																																																																															
RAD50	10111	MSKCC	GRCh37	5	131923778	131923778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	98	300	0	ENST00000265335.6:c.1048C>T	p.Gln350Ter	p.Q350*	ENST00000265335		350	Cag/Tag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508461	106508461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	86	69	0	ENST00000359195.3:c.455G>A	p.Arg152Gln	p.R152Q	ENST00000359195	NM_002649.2	152	cGg/cAg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18747474	18747474	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs561351298		P-0007631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	106	350	0	ENST00000266497.5:c.3935C>G	p.Thr1312Arg	p.T1312R	ENST00000266497		1312	aCa/aGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1404	196	548	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	227	303	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161324	55161324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	152	424	0	ENST00000257290.5:c.3155C>T	p.Thr1052Met	p.T1052M	ENST00000257290	NM_006206.4	1052	aCg/aTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202149619	202149619	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	186	449	0	ENST00000358485.4:c.1060A>T	p.Ile354Phe	p.I354F	ENST00000358485	NM_001080125.1	354	Att/Ttt																																																																															
MYC	4609	MSKCC	GRCh37	8	128750765	128750765	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	272	359	0	ENST00000377970.2:c.302A>G	p.Asn101Ser	p.N101S	ENST00000377970	NM_002467.4	101	aAc/aGc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894992	101894992	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1160	252	530	0	ENST00000374994.4:c.545A>G	p.Tyr182Cys	p.Y182C	ENST00000374994	NM_004612.2	182	tAt/tGt																																																																															
ATM	472	MSKCC	GRCh37	11	108218035	108218035	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	393	460	0	ENST00000278616.4:c.8614C>G	p.His2872Asp	p.H2872D	ENST00000278616	NM_000051.3	2872	Cat/Gat																																																																															
GPS2	2874	MSKCC	GRCh37	17	7218300	7218300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	140	437	1	ENST00000380728.2:c.72G>A	p.Met24Ile	p.M24I	ENST00000380728		24	atG/atA																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51436101	51436101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	315	338	2	ENST00000262662.1:c.61C>T	p.Leu21Phe	p.L21F	ENST00000262662		21	Ctt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7572971	7572971	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	723	640	0	ENST00000269305.4:c.1138del	p.His380IlefsTer42	p.H380Ifs*42	ENST00000269305	NM_001126112.2	380	Cat/at																																																																															
APC	324	MSKCC	GRCh37	5	112175349	112175353	+	frameshift_variant	Frame_Shift_Del	DEL	AATTT	AATTT	-			P-0007669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	531	291	0	ENST00000257430.4:c.4058_4062del	p.Glu1353ValfsTer20	p.E1353Vfs*20	ENST00000257430	NM_000038.5	1353	gAATTT/g																																																																															
APC	324	MSKCC	GRCh37	5	112175343	112175344	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGGCACAA			P-0007669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	543	291	0	ENST00000257430.4:c.4052_4053insCAGGCACAA	p.Ala1351_Val1352insArgHisAsn	p.A1351_V1352insRHN	ENST00000257430	NM_000038.5	1351	gct/gcCAGGCACAAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42021542	42021543	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	TA			P-0007669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2023	143	695	2	ENST00000219905.7:c.3838_3839delinsTA	p.Ala1280Ter	p.A1280*	ENST00000219905	NM_001164273.1	1280	GCa/TAa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	95	264	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	57	409	0	ENST00000264010.4:c.2070delA	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	144	564	1	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	447	565	16	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	50	353	0	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	105	427	0	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988348	36988348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	19	118	1	ENST00000354822.5:c.305C>T	p.Ala102Val	p.A102V	ENST00000354822	NM_001079668.2	102	gCg/gTg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6043349	6043349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	47	204	0	ENST00000265849.7:c.325del	p.Glu109LysfsTer3	p.E109Kfs*3	ENST00000265849	NM_000535.5	109	Gaa/aa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11186733	11186733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	104	558	0	ENST00000361445.4:c.6472C>T	p.Pro2158Ser	p.P2158S	ENST00000361445	NM_004958.3	2158	Ccg/Tcg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747937	41747937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	59	310	1	ENST00000226382.2:c.832G>T	p.Gly278Cys	p.G278C	ENST00000226382	NM_003924.3	278	Ggc/Tgc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555104	106555104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	92	333	0	ENST00000369096.4:c.2221C>T	p.Arg741Trp	p.R741W	ENST00000369096	NM_001198.3	741	Cgg/Tgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151875067	151875067	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	56	219	0	ENST00000262189.6:c.7471A>G	p.Thr2491Ala	p.T2491A	ENST00000262189	NM_170606.2	2491	Acc/Gcc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417575	139417575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	78	465	2	ENST00000277541.6:c.469C>T	p.Pro157Ser	p.P157S	ENST00000277541	NM_017617.3	157	Ccc/Tcc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649849	88649849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	48	219	0	ENST00000372037.3:c.98C>T	p.Thr33Ile	p.T33I	ENST00000372037	NM_004329.2	33	aCt/aTt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625393	69625393	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	86	480	0	ENST00000334134.2:c.400T>C	p.Tyr134His	p.Y134H	ENST00000334134	NM_005247.2	134	Tac/Cac																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94211958	94211958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1105	168	525	1	ENST00000323929.3:c.487G>A	p.Asp163Asn	p.D163N	ENST00000323929	NM_005591.3	163	Gac/Aac																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56490875	56490875	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	105	440	0	ENST00000267101.3:c.2321T>C	p.Leu774Pro	p.L774P	ENST00000267101	NM_001982.3	774	cTg/cCg																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145108	58145108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	117	358	0	ENST00000257904.6:c.236C>T	p.Ala79Val	p.A79V	ENST00000257904	NM_000075.3	79	gCc/gTc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112329	115112329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	15	100	0	ENST00000257566.3:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000257566	NM_016569.3	471	Cgc/Tgc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29005402	29005402	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	197	406	0	ENST00000282397.4:c.859T>C	p.Ser287Pro	p.S287P	ENST00000282397	NM_002019.4	287	Tcc/Ccc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346401	73346401	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs143362001		P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	198	351	1	ENST00000377767.4:c.1399C>T	p.Arg467Ter	p.R467*	ENST00000377767	NM_014953.3	467	Cga/Tga																																																																															
CD276	80381	MSKCC	GRCh37	15	73994739	73994739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	79	526	1	ENST00000318443.5:c.223C>A	p.Leu75Met	p.L75M	ENST00000318443	NM_001024736.1	75	Ctg/Atg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56867238	56867238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	123	619	1	ENST00000308159.5:c.1457G>A	p.Arg486His	p.R486H	ENST00000308159	NM_014669.4	486	cGc/cAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68855952	68855952	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	131	591	0	ENST00000261769.5:c.1760A>G	p.Asp587Gly	p.D587G	ENST00000261769	NM_004360.3	587	gAt/gGt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615698	1615698	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	134	984	4	ENST00000344749.5:c.1573C>G	p.Arg525Gly	p.R525G	ENST00000344749	NM_001136139.2	525	Cgg/Ggg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273017	18273017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	117	486	0	ENST00000222254.8:c.907C>T	p.Pro303Ser	p.P303S	ENST00000222254	NM_005027.3	303	Ccg/Tcg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39935759	39935759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1257	261	814	1	ENST00000378444.4:c.113C>T	p.Ala38Val	p.A38V	ENST00000378444	NM_001123385.1	38	gCt/gTt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39914632	39914632	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1083	256	711	0	ENST00000378444.4:c.4730del	p.Lys1577SerfsTer3	p.K1577Sfs*3	ENST00000378444	NM_001123385.1	1577	aAg/ag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157222626	157222631	+	inframe_deletion	In_Frame_Del	DEL	GTCCCA	GTCCCA	-			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	66	304	0	ENST00000346085.5:c.1900_1905del	p.Ser634_Gln635del	p.S634_Q635del	ENST00000346085	NM_020732.3	631	ccGTCCCAg/ccg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830551	72830551	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1136	200	900	1	ENST00000268489.5:c.6030del	p.Pro2011LeufsTer22	p.P2011Lfs*22	ENST00000268489	NM_006885.3	2010	ttT/tt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100260	157100260	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	57	131	0	ENST00000346085.5:c.1202del	p.Gly401AlafsTer29	p.G401Afs*29	ENST00000346085	NM_020732.3	399	gcG/gc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098363	11098363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	124	476	0	ENST00000344626.4:c.885del	p.Thr296ArgfsTer7	p.T296Rfs*7	ENST00000344626	NM_003072.3	294	gCc/gc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615692	1615692	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	135	978	0	ENST00000344749.5:c.1579delC	p.Arg527GlyfsTer16	p.R527Gfs*16	ENST00000344749	NM_001136139.2	527	Cgg/gg																																																																															
TP63	8626	MSKCC	GRCh37	3	189526209	189526210	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	114	546	0	ENST00000264731.3:c.480_481delTC	p.Pro161IlefsTer36	p.P161Ifs*36	ENST00000264731	NM_003722.4	158	gCT/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	43	330	0	ENST00000269305.4:c.517del	p.Val173Ter	p.V173*	ENST00000269305	NM_001126112.2	173	Gtg/tg																																																																															
ATR	545	MSKCC	GRCh37	3	142217557	142217557	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	142	448	1	ENST00000350721.4:c.5440delA	p.Arg1814GlufsTer10	p.R1814Efs*10	ENST00000350721	NM_001184.3	1814	Aga/ga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0007868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	168	565	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0007868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	154	456	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
APC	324	MSKCC	GRCh37	5	112174720	112174720	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0007868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	98	416	0	ENST00000257430.4:c.3429T>G	p.Tyr1143Ter	p.Y1143*	ENST00000257430	NM_000038.5	1143	taT/taG																																																																															
APC	324	MSKCC	GRCh37	5	112175447	112175447	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	50	373	0	ENST00000257430.4:c.4156A>T	p.Arg1386Ter	p.R1386*	ENST00000257430	NM_000038.5	1386	Aga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108235939	108235939	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	30	350	0	ENST00000278616.4:c.8981A>G	p.Asn2994Ser	p.N2994S	ENST00000278616	NM_000051.3	2994	aAt/aGt																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867334	45867334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	64	204	0	ENST00000391945.4:c.859C>T	p.Arg287Cys	p.R287C	ENST00000391945	NM_000400.3	287	Cgt/Tgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713386	40713386	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	61	451	3	ENST00000373198.4:c.4129C>T	p.Arg1377Ter	p.R1377*	ENST00000373198	NM_133170.3	1377	Cga/Tga																																																																															
EP300	2033	MSKCC	GRCh37	22	41573381	41573381	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	28	564	1	ENST00000263253.7:c.5666G>T	p.Arg1889Met	p.R1889M	ENST00000263253	NM_001429.3	1889	aGg/aTg																																																																															
MAX	4149	MSKCC	GRCh37	14	65560500	65560500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	299	421	0	ENST00000358664.4:c.97C>T	p.Arg33Ter	p.R33*	ENST00000358664	NM_002382.4	33	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0007879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	417	349	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463289	25463289	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs147828672		P-0007879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	104	303	0	ENST00000264709.3:c.2204A>G	p.Tyr735Cys	p.Y735C	ENST00000264709	NM_175629.2	735	tAc/tGc																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873421	136873421	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			959	148	668	1	ENST00000241393.3:c.77A>T	p.Glu26Val	p.E26V	ENST00000241393	NM_003467.2	26	gAa/gTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542681	187542681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	321	488	0	ENST00000441802.2:c.5059G>T	p.Gly1687Trp	p.G1687W	ENST00000441802	NM_005245.3	1687	Ggg/Tgg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056437	26056437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	58	197	0	ENST00000343677.2:c.220G>A	p.Glu74Lys	p.E74K	ENST00000343677	NM_005319.3	74	Gag/Aag																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540386	23540386	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	48	86	0	ENST00000380871.4:c.17A>T	p.Glu6Val	p.E6V	ENST00000380871	NM_006167.3	6	gAg/gTg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891211	101891211	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	121	416	0	ENST00000374994.4:c.172G>T	p.Val58Phe	p.V58F	ENST00000374994	NM_004612.2	58	Gtc/Ttc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391998	139391998	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	59	309	0	ENST00000277541.6:c.6193C>G	p.Leu2065Val	p.L2065V	ENST00000277541	NM_017617.3	2065	Ctg/Gtg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041209	47041285	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTCTGCTCTCCCACCGGCTACCAGCCCCACTGCCCAGGAATCCTACAGCCAGTACCGTGAGTAGCCACAGCCTGTG	GTTCTGCTCTCCCACCGGCTACCAGCCCCACTGCCCAGGAATCCTACAGCCAGTACCGTGAGTAGCCACAGCCTGTG	-			P-0007879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	267	564	0	ENST00000329236.7:c.1404_1459+21del		p.X468_splice	ENST00000329236	NM_001204466.1	468																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	238	489	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55153609	55153609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1293	314	602	0	ENST00000257290.5:c.2575G>A	p.Val859Met	p.V859M	ENST00000257290	NM_006206.4	859	Gtg/Atg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515215	149515215	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1247	230	645	0	ENST00000261799.4:c.267C>A	p.Asn89Lys	p.N89K	ENST00000261799	NM_002609.3	89	aaC/aaA																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94068126	94068126	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1543	209	825	0	ENST00000369303.4:c.836G>T	p.Cys279Phe	p.C279F	ENST00000369303	NM_004440.3	279	tGt/tTt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522169	157522169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	121	318	1	ENST00000346085.5:c.4441C>T	p.Pro1481Ser	p.P1481S	ENST00000346085	NM_020732.3	1481	Cct/Tct																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646831	23646831	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0007911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1405	1102	781	1	ENST00000261584.4:c.1036A>T	p.Lys346Ter	p.K346*	ENST00000261584	NM_024675.3	346	Aaa/Taa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16042359	16042359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	285	613	0	ENST00000268712.3:c.1315G>A	p.Val439Ile	p.V439I	ENST00000268712	NM_006311.3	439	Gtt/Att																																																																															
EP300	2033	MSKCC	GRCh37	22	41564828	41564828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1097	145	482	1	ENST00000263253.7:c.4129C>T	p.His1377Tyr	p.H1377Y	ENST00000263253	NM_001429.3	1377	Cat/Tat																																																																															
MED12	9968	MSKCC	GRCh37	X	70354667	70354667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007926-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	135	617	0	ENST00000374080.3:c.4832G>A	p.Arg1611His	p.R1611H	ENST00000374080		1611	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576888	7576889	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007926-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	97	419	0	ENST00000269305.4:c.957_958insT	p.Lys320Ter	p.K320*	ENST00000269305	NM_001126112.2	319	-/T																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952149	178952150	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTT			P-0007926-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	102	221	0	ENST00000263967.3:c.3205_3206insTTTT	p.Ter1069PhefsTer5	p.*1069Ffs*5	ENST00000263967	NM_006218.2	1068	-/TTTT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0008022-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			366	177	297	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008022-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			318	289	334	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																															
ATM	472	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0008022-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			484	209	288	2	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589138	67589138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008022-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			493	177	286	0	ENST00000274335.5:c.1126G>A	p.Gly376Arg	p.G376R	ENST00000274335		376	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008022-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			326	167	295	0	ENST00000269305.4:c.392A>G	p.Asn131Ser	p.N131S	ENST00000269305	NM_001126112.2	131	aAc/aGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100976	27100976	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008022-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			386	142	306	0	ENST00000324856.7:c.4258C>T	p.Gln1420Ter	p.Q1420*	ENST00000324856	NM_006015.4	1420	Cag/Tag																																																																															
SRC	6714	MSKCC	GRCh37	20	36026147	36026147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008022-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			538	515	406	0	ENST00000358208.4:c.749C>T	p.Thr250Met	p.T250M	ENST00000358208		250	aCg/aTg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750778	57750778	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008162-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			854	53	793	0	ENST00000274289.3:c.1826A>G	p.Asp609Gly	p.D609G	ENST00000274289	NM_006622.3	609	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0008308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	337	493	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
MITF	4286	MSKCC	GRCh37	3	70014097	70014097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	231	802	0	ENST00000352241.4:c.1261G>A	p.Val421Ile	p.V421I	ENST00000352241	NM_198159.2	421	Gtt/Att																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710666	114710666	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	436	763	0	ENST00000543371.1:c.151G>T	p.Glu51Ter	p.E51*	ENST00000543371	NM_001198531.1	51	Gaa/Taa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2221281	2221281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	317	502	3	ENST00000326181.6:c.365C>T	p.Ala122Val	p.A122V	ENST00000326181	NM_032271.2	122	gCg/gTg																																																																															
AR	367	MSKCC	GRCh37	X	66941679	66941679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	446	403	0	ENST00000374690.3:c.2323C>T	p.Arg775Cys	p.R775C	ENST00000374690	NM_000044.3	775	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578266	7578267	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	323	523	0	ENST00000269305.4:c.582dup	p.Ile195TyrfsTer14	p.I195Yfs*14	ENST00000269305	NM_001126112.2	194	-/T																																																																															
APC	324	MSKCC	GRCh37	5	112175213	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0008308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	137	247	0	ENST00000257430.4:c.3925_3928del	p.Glu1309ArgfsTer11	p.E1309Rfs*11	ENST00000257430	NM_000038.5	1308	AAAGaa/aa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591892	48591894	+	inframe_deletion	In_Frame_Del	DEL	GAT	GAT	-			P-0008308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	456	630	0	ENST00000342988.3:c.1055_1057del	p.Gly352_Tyr353delinsAsp	p.G352_Y353delinsD	ENST00000342988	NM_005359.5	352	gGATac/gac																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			105	70	226	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604787	48604787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			84	40	261	0	ENST00000342988.3:c.1609G>T	p.Asp537Tyr	p.D537Y	ENST00000342988	NM_005359.5	537	Gac/Tac																																																																															
PMS1	5378	MSKCC	GRCh37	2	190682869	190682869	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			156	43	227	0	ENST00000441310.2:c.545T>G	p.Leu182Arg	p.L182R	ENST00000441310	NM_000534.4	182	cTt/cGt																																																																															
INHA	3623	MSKCC	GRCh37	2	220437275	220437275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			200	51	455	1	ENST00000243786.2:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000243786	NM_002191.3	60	cGa/cAa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66233142	66233142	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			126	49	282	0	ENST00000273854.3:c.1857G>A	p.Trp619Ter	p.W619*	ENST00000273854	NM_004439.5	619	tgG/tgA																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484372	8484372	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			97	26	194	0	ENST00000356435.5:c.3160T>C	p.Tyr1054His	p.Y1054H	ENST00000356435		1054	Tat/Cat																																																																															
POLE	5426	MSKCC	GRCh37	12	133201369	133201369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			87	38	289	0	ENST00000320574.5:c.6775C>T	p.Arg2259Trp	p.R2259W	ENST00000320574	NM_006231.2	2259	Cgg/Tgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29677306	29677306	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			64	44	270	0	ENST00000358273.4:c.7427A>T	p.Tyr2476Phe	p.Y2476F	ENST00000358273	NM_001042492.2	2476	tAt/tTt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435815	56435815	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			34	31	168	0	ENST00000407977.2:c.1322delC	p.Pro441LeufsTer61	p.P441Lfs*61	ENST00000407977		441	cCt/ct																																																																															
DIS3	22894	MSKCC	GRCh37	13	73342922	73342923	+	inframe_insertion,splice_region_variant	In_Frame_Ins	INS	-	-	CCT			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			177	61	283	0	ENST00000377767.4:c.1881_1883dup	p.Gly628dup	p.G628dup	ENST00000377767	NM_014953.3	628	ggg/ggAGGg																																																																															
PARP1	142	MSKCC	GRCh37	1	226570841	226570841	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			132	10	230	0	ENST00000366794.5:c.1055A>C	p.Lys352Thr	p.K352T	ENST00000366794	NM_001618.3	352	aAa/aCa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522403	157522403	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			142	11	263	0	ENST00000346085.5:c.4675T>G	p.Phe1559Val	p.F1559V	ENST00000346085	NM_020732.3	1559	Ttc/Gtc																																																																															
CCND1	595	MSKCC	GRCh37	11	69456108	69456108	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			113	10	281	0	ENST00000227507.2:c.27A>T	p.Glu9Asp	p.E9D	ENST00000227507	NM_053056.2	9	gaA/gaT																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350338	89350338	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			202	19	551	0	ENST00000301030.4:c.2612A>C	p.Asp871Ala	p.D871A	ENST00000301030	NM_001256183.1	871	gAc/gCc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120461135	120461135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008458-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			163	26	300	0	ENST00000256646.2:c.5823G>A	p.Met1941Ile	p.M1941I	ENST00000256646	NM_024408.3	1941	atG/atA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008458-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			94	11	309	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845956	151845956	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008458-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			113	34	389	0	ENST00000262189.6:c.13056G>A	p.Trp4352Ter	p.W4352*	ENST00000262189	NM_170606.2	4352	tgG/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0008458-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			91	14	343	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0008458-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			270	79	257	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
RNF43	54894	MSKCC	GRCh37	17	56435549	56435549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008458-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			343	59	424	1	ENST00000407977.2:c.1588C>T	p.Pro530Ser	p.P530S	ENST00000407977		530	Cct/Tct																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715688	30715689	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008458-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			117	22	295	0	ENST00000359013.4:c.1421_1422insT	p.Met475HisfsTer13	p.M475Hfs*13	ENST00000359013	NM_001024847.2	474	tcc/tcTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008464-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			540	14	297	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0008464-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			441	113	295	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274911	41274911	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs868651538		P-0008464-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			433	23	235	0	ENST00000349496.5:c.1161T>A	p.Asn387Lys	p.N387K	ENST00000349496	NM_001904.3	387	aaT/aaA																																																																															
AKT3	10000	MSKCC	GRCh37	1	243809240	243809240	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1460	97	641	0	ENST00000263826.5:c.384A>G	p.Ile128Met	p.I128M	ENST00000263826	NM_005465.4	128	atA/atG																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543861	212543861	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			876	55	380	0	ENST00000342788.4:c.1538G>T	p.Trp513Leu	p.W513L	ENST00000342788	NM_005235.2	513	tGg/tTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212576787	212576787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			934	158	441	1	ENST00000342788.4:c.1112C>A	p.Thr371Asn	p.T371N	ENST00000342788	NM_005235.2	371	aCt/aAt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498373	89498373	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			498	75	307	0	ENST00000336596.2:c.2347-2A>T		p.X783_splice	ENST00000336596	NM_005233.5	783																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134670841	134670841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			335	31	176	0	ENST00000398015.3:c.752G>T	p.Gly251Val	p.G251V	ENST00000398015	NM_004441.4	251	gGg/gTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134825298	134825298	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			719	65	368	0	ENST00000398015.3:c.814G>C	p.Ala272Pro	p.A272P	ENST00000398015	NM_004441.4	272	Gca/Cca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919111	178919111	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			694	53	302	0	ENST00000263967.3:c.596C>G	p.Ser199Cys	p.S199C	ENST00000263967	NM_006218.2	199	tCt/tGt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55151593	55151593	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1202	81	544	0	ENST00000257290.5:c.2379G>C	p.Leu793Phe	p.L793F	ENST00000257290	NM_006206.4	793	ttG/ttC																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007355	143007355	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			763	177	369	0	ENST00000262992.4:c.2429T>A	p.Leu810His	p.L810H	ENST00000262992	NM_001101669.1	810	cTt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517745	187517745	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			358	103	210	0	ENST00000441802.2:c.12949C>A	p.Pro4317Thr	p.P4317T	ENST00000441802	NM_005245.3	4317	Cct/Act																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			446	62	326	0				ENST00000310581	NM_198253.2																																																																																	
ARID1B	57492	MSKCC	GRCh37	6	157470075	157470075	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			210	21	102	0	ENST00000346085.5:c.2869G>T	p.Ala957Ser	p.A957S	ENST00000346085	NM_020732.3	957	Gca/Tca																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467792	50467792	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			786	61	474	1	ENST00000331340.3:c.1027G>T	p.Val343Phe	p.V343F	ENST00000331340	NM_006060.4	343	Gtc/Ttc																																																																															
HGF	3082	MSKCC	GRCh37	7	81335070	81335070	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			607	38	259	0	ENST00000222390.5:c.1758-1G>C		p.X586_splice	ENST00000222390	NM_000601.4	586																																																																																
MET	4233	MSKCC	GRCh37	7	116339283	116339283	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1447	99	544	0	ENST00000397752.3:c.145G>T	p.Glu49Ter	p.E49*	ENST00000397752	NM_000245.2	49	Gaa/Taa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8436685	8436685	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			756	59	367	0	ENST00000356435.5:c.3993G>C	p.Met1331Ile	p.M1331I	ENST00000356435		1331	atG/atC																																																																															
TSC1	7248	MSKCC	GRCh37	9	135780996	135780996	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1403	428	862	0	ENST00000298552.3:c.1969G>T	p.Ala657Ser	p.A657S	ENST00000298552	NM_001162426.1	657	Gca/Tca																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100747	8100748	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			684	106	326	0	ENST00000346208.3:c.721_722delinsTT	p.Gly241Phe	p.G241F	ENST00000346208		241	GGc/TTc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77066737	77066737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1174	173	558	0	ENST00000356341.3:c.748G>C	p.Asp250His	p.D250H	ENST00000356341	NM_002576.4	250	Gat/Cat																																																																															
YAP1	10413	MSKCC	GRCh37	11	102076656	102076656	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			494	185	303	0	ENST00000282441.5:c.835G>T	p.Val279Leu	p.V279L	ENST00000282441	NM_001130145.2	279	Gtg/Ttg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			677	226	402	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885884	111885884	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1703	149	825	1	ENST00000341259.2:c.1506T>A	p.Ser502Arg	p.S502R	ENST00000341259	NM_005475.2	502	agT/agA																																																																															
POLE	5426	MSKCC	GRCh37	12	133202738	133202738	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			835	191	543	0	ENST00000320574.5:c.6496G>T	p.Asp2166Tyr	p.D2166Y	ENST00000320574	NM_006231.2	2166	Gac/Tac																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608451	28608451	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			838	64	448	0	ENST00000241453.7:c.1691A>T	p.His564Leu	p.H564L	ENST00000241453	NM_004119.2	564	cAc/cTc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346365	73346365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			791	144	412	0	ENST00000377767.4:c.1435G>T	p.Asp479Tyr	p.D479Y	ENST00000377767	NM_014953.3	479	Gac/Tac																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103520576	103520576	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			944	135	513	0	ENST00000355739.4:c.2647G>T	p.Gly883Trp	p.G883W	ENST00000355739	NM_000123.3	883	Ggg/Tgg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576175	88576175	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			770	58	383	1	ENST00000360948.2:c.1498A>T	p.Thr500Ser	p.T500S	ENST00000360948	NM_001012338.2	500	Act/Tct																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680705	88680705	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			972	73	505	0	ENST00000360948.2:c.552C>A	p.Ser184Arg	p.S184R	ENST00000360948	NM_001012338.2	184	agC/agA																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88726685	88726685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			711	57	406	0	ENST00000360948.2:c.359C>A	p.Pro120His	p.P120H	ENST00000360948	NM_001012338.2	120	cCc/cAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943749	9943749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			544	114	368	0	ENST00000330684.3:c.1192G>T	p.Asp398Tyr	p.D398Y	ENST00000330684	NM_001134407.1	398	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			634	154	401	1	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016579	12016579	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			731	140	390	0	ENST00000353533.5:c.715A>T	p.Arg239Ter	p.R239*	ENST00000353533	NM_003010.3	239	Aga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29562942	29562942	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1133	185	550	3	ENST00000358273.4:c.3877G>T	p.Gly1293Cys	p.G1293C	ENST00000358273	NM_001042492.2	1293	Ggt/Tgt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41222955	41222955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1292	233	673	0	ENST00000357654.3:c.4976C>T	p.Pro1659Leu	p.P1659L	ENST00000357654	NM_007294.3	1659	cCa/cTa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243818	41243818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			724	131	385	0	ENST00000357654.3:c.3730C>T	p.His1244Tyr	p.H1244Y	ENST00000357654	NM_007294.3	1244	Cat/Tat																																																																															
STAG2	10735	MSKCC	GRCh37	X	123190081	123190081	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			640	71	280	0	ENST00000218089.9:c.1300A>C	p.Lys434Gln	p.K434Q	ENST00000218089	NM_001042749.1	434	Aaa/Caa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212578336	212578336	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			851	61	389	0	ENST00000342788.4:c.921del	p.Cys308AlafsTer8	p.C308Afs*8	ENST00000342788	NM_005235.2	307	gcC/gc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907073	101907073	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			709	148	383	0	ENST00000374994.4:c.1034del	p.Gly345GlufsTer8	p.G345Efs*8	ENST00000374994	NM_004612.2	345	Gga/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0008488-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			485	85	203	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																															
INHA	3623	MSKCC	GRCh37	2	220440222	220440222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008488-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1105	281	589	1	ENST00000243786.2:c.1075C>A	p.Leu359Ile	p.L359I	ENST00000243786	NM_002191.3	359	Ctc/Atc																																																																															
TERT	7015	MSKCC	GRCh37	5	1272334	1272334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008488-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			705	186	368	0	ENST00000310581.5:c.2348C>A	p.Thr783Asn	p.T783N	ENST00000310581	NM_198253.2	783	aCc/aAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3799652	3799652	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008488-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1170	69	429	0	ENST00000262367.5:c.3812A>G	p.Lys1271Arg	p.K1271R	ENST00000262367	NM_004380.2	1271	aAa/aGa																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867270	45867270	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008488-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			451	65	175	2	ENST00000391945.4:c.923C>A	p.Pro308His	p.P308H	ENST00000391945	NM_000400.3	308	cCc/cAc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841228	15841228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008488-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			851	207	373	0	ENST00000307771.7:c.1312G>T	p.Gly438Cys	p.G438C	ENST00000307771	NM_005089.3	438	Ggc/Tgc																																																																															
ATR	545	MSKCC	GRCh37	3	142268448	142268448	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008488-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			817	48	253	0	ENST00000350721.4:c.3044G>C	p.Arg1015Pro	p.R1015P	ENST00000350721	NM_001184.3	1015	cGa/cCa																																																																															
KDR	3791	MSKCC	GRCh37	4	55968577	55968577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008488-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	70	354	0	ENST00000263923.4:c.2086C>A	p.Pro696Thr	p.P696T	ENST00000263923	NM_002253.2	696	Cca/Aca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0008549-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			712	312	460	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193121548	193121548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008549-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1243	133	499	0	ENST00000367435.3:c.946C>T	p.His316Tyr	p.H316Y	ENST00000367435	NM_024529.4	316	Cat/Tat																																																																															
MTOR	2475	MSKCC	GRCh37	1	11184592	11184592	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008549-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			859	273	567	0	ENST00000361445.4:c.6625C>G	p.Leu2209Val	p.L2209V	ENST00000361445	NM_004958.3	2209	Ctg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0008761-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			519	640	719	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0008761-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			735	393	758	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
ALK	238	MSKCC	GRCh37	2	29416767	29416767	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201768549		P-0008761-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			366	279	384	0	ENST00000389048.3:c.4186G>A	p.Ala1396Thr	p.A1396T	ENST00000389048	NM_004304.4	1396	Gct/Act																																																																															
MET	4233	MSKCC	GRCh37	7	116418847	116418847	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008761-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			935	321	707	1	ENST00000397752.3:c.3358G>T	p.Glu1120Ter	p.E1120*	ENST00000397752	NM_000245.2	1120	Gaa/Taa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954283	32954283	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0008769-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			364	129	404	0	ENST00000380152.3:c.9256+1G>C		p.X3086_splice	ENST00000380152		3086																																																																																
BLM	641	MSKCC	GRCh37	15	91312710	91312725	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCGCCAGAAGTTTC	CTTCGCCAGAAGTTTC	-			P-0008769-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			704	193	522	0	ENST00000355112.3:c.2453_2468del	p.Arg818LeufsTer4	p.R818Lfs*4	ENST00000355112	NM_000057.2	817	CTTCGCCAGAAGTTTCct/ct																																																																															
CBL	867	MSKCC	GRCh37	11	119155712	119155712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008769-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			728	83	576	0	ENST00000264033.4:c.1465C>T	p.Pro489Ser	p.P489S	ENST00000264033	NM_005188.3	489	Cca/Tca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49449085	49449103	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGCCAGCTTCTGGCTGT	CCAGCCAGCTTCTGGCTGT	-			P-0008769-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			669	109	452	0	ENST00000301067.7:c.5_23del	p.Asp2ValfsTer122	p.D2Vfs*122	ENST00000301067	NM_003482.3	2	gACAGCCAGAAGCTGGCTGGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0009214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1282	199	579	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509312	106509312	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1142	84	404	0	ENST00000359195.3:c.1306G>T	p.Gly436Cys	p.G436C	ENST00000359195	NM_002649.2	436	Ggt/Tgt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691905	30691905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	85	335	0	ENST00000359013.4:c.482G>A	p.Cys161Tyr	p.C161Y	ENST00000359013	NM_001024847.2	161	tGt/tAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356152	66356152	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370633345		P-0009214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	57	449	0	ENST00000273854.3:c.1345G>A	p.Asp449Asn	p.D449N	ENST00000273854	NM_004439.5	449	Gac/Aac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361223	66361223	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	55	349	0	ENST00000273854.3:c.949C>A	p.Gln317Lys	p.Q317K	ENST00000273854	NM_004439.5	317	Cag/Aag																																																																															
RAB35	11021	MSKCC	GRCh37	12	120541733	120541733	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1572	194	680	0	ENST00000229340.5:c.124G>T	p.Gly42Ter	p.G42*	ENST00000229340	NM_006861.6	42	Gga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984514	72984514	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1626	91	769	0	ENST00000268489.5:c.3070G>T	p.Ala1024Ser	p.A1024S	ENST00000268489	NM_006885.3	1024	Gcc/Tcc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602581	10602582	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0009214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	109	323	0	ENST00000171111.5:c.996_997del	p.Gly333LeufsTer16	p.G333Lfs*16	ENST00000171111	NM_203500.1	332	ggCGgc/gggc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0009224-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			503	85	390	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0009224-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			727	225	464	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009224-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			445	81	263	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653807	89653807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009224-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			283	70	356	0	ENST00000371953.3:c.105G>A	p.Met35Ile	p.M35I	ENST00000371953	NM_000314.4	35	atG/atA																																																																															
REL	5966	MSKCC	GRCh37	2	61145742	61145742	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0009224-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			285	44	216	0	ENST00000295025.8:c.853+1G>A		p.X285_splice	ENST00000295025	NM_002908.2	285																																																																																
AMER1	139285	MSKCC	GRCh37	X	63412323	63412323	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009224-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			235	101	285	0	ENST00000330258.3:c.844G>T	p.Glu282Ter	p.E282*	ENST00000330258	NM_152424.3	282	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112170768	112170769	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0009224-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			722	54	517	0	ENST00000257430.4:c.1865dup	p.Tyr622Ter	p.Y622*	ENST00000257430	NM_000038.5	622	tac/tAac																																																																															
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009402-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			778	332	307	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061223	38061231	+	inframe_deletion	In_Frame_Del	DEL	TCTCGAACA	TCTCGAACA	-			P-0009402-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			433	228	505	0	ENST00000250448.2:c.758_766del	p.Met253_Glu255del	p.M253_E255del	ENST00000250448	NM_004496.3	253	aTGTTCGAGAac/aac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828767	72828767	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0009402-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			509	203	595	0	ENST00000268489.5:c.7814C>G	p.Ser2605Ter	p.S2605*	ENST00000268489	NM_006885.3	2605	tCa/tGa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619370	37619370	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0009402-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			261	125	286	0	ENST00000447079.4:c.1046+1del		p.S349fs	ENST00000447079	NM_015083.1	349	aGt/at																																																																															
CDK12	51755	MSKCC	GRCh37	17	37665974	37665975	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0009402-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			413	123	426	0	ENST00000447079.4:c.2626_2627delinsTT	p.Ala876Leu	p.A876L	ENST00000447079	NM_015083.1	876	GCa/TTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0009741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	216	418	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0009741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	314	472	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584497	48584497	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0009741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	189	262	1	ENST00000342988.3:c.670C>T	p.Gln224Ter	p.Q224*	ENST00000342988	NM_005359.5	224	Cag/Tag																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943724	17943724	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	36	261	0	ENST00000458235.1:c.2365T>G	p.Ser789Ala	p.S789A	ENST00000458235	NM_000215.3	789	Tca/Gca																																																																															
CCND2	894	MSKCC	GRCh37	12	4409115	4409122	+	frameshift_variant	Frame_Shift_Del	DEL	GTCGGAGG	GTCGGAGG	-			P-0009741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	181	455	1	ENST00000261254.3:c.810_817del	p.Ser271Ter	p.S271*	ENST00000261254	NM_001759.3	270	aaGTCGGAGGat/aaat																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120007	70120007	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	60	44	0	ENST00000245479.2:c.1009del	p.Ser337ProfsTer46	p.S337Pfs*46	ENST00000245479	NM_000346.3	337	Tcc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0010074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	140	575	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	88	444	1	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0010074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	55	482	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
RET	5979	MSKCC	GRCh37	10	43572717	43572717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	64	201	0	ENST00000355710.3:c.11C>A	p.Ala4Glu	p.A4E	ENST00000355710	NM_020975.4	4	gCg/gAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0010180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1753	189	894	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717699	89717699	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	179	646	0	ENST00000371953.3:c.724G>T	p.Glu242Ter	p.E242*	ENST00000371953	NM_000314.4	242	Gag/Tag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453187	140453187	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	35	494	0	ENST00000288602.6:c.1748T>G	p.Phe583Cys	p.F583C	ENST00000288602	NM_004333.4	583	tTt/tGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	391	471	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845367	151845367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			67	319	450	0	ENST00000262189.6:c.13645C>T	p.Arg4549Cys	p.R4549C	ENST00000262189	NM_170606.2	4549	Cgc/Tgc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115871	8115872	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0010234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	419	588	0	ENST00000346208.3:c.1219_1220delTC	p.Ser407AlafsTer99	p.S407Afs*99	ENST00000346208		406	aTC/a																																																																															
RAD51B	5890	MSKCC	GRCh37	14	69061276	69061276	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	10	104	0	ENST00000487270.1:c.1111C>T	p.Gln371Ter	p.Q371*	ENST00000487270	NM_133509.3	371	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	32	128	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	109	320	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																															
CDK6	1021	MSKCC	GRCh37	7	92462418	92462418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	55	329	0	ENST00000265734.4:c.220C>T	p.Pro74Ser	p.P74S	ENST00000265734	NM_001259.6	74	Ccc/Tcc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939103	36939103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1435	208	680	0	ENST00000361632.4:c.606G>T	p.Trp202Cys	p.W202C	ENST00000361632		202	tgG/tgT																																																																															
MYCL	4610	MSKCC	GRCh37	1	40367115	40367115	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	81	360	0	ENST00000397332.2:c.82G>A	p.Gly28Arg	p.G28R	ENST00000397332	NM_001033082.2	28	Gga/Aga																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429324	78429324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	55	378	1	ENST00000370768.2:c.1118C>T	p.Pro373Leu	p.P373L	ENST00000370768	NM_003902.3	373	cCt/cTt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212587235	212587235	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	45	342	0	ENST00000342788.4:c.766G>T	p.Gly256Ter	p.G256*	ENST00000342788	NM_005235.2	256	Gga/Tga																																																																															
BARD1	580	MSKCC	GRCh37	2	215645456	215645456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	95	687	0	ENST00000260947.4:c.1142G>A	p.Ser381Asn	p.S381N	ENST00000260947	NM_000465.2	381	aGt/aAt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442502	52442502	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	33	136	0	ENST00000460680.1:c.243C>G	p.Phe81Leu	p.F81L	ENST00000460680	NM_004656.3	81	ttC/ttG																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541364	187541364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	49	376	0	ENST00000441802.2:c.6376C>A	p.His2126Asn	p.H2126N	ENST00000441802	NM_005245.3	2126	Cac/Aac																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876278	35876278	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	40	292	0	ENST00000303115.3:c.1070C>G	p.Thr357Ser	p.T357S	ENST00000303115	NM_002185.3	357	aCt/aGt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876401	35876401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	34	230	0	ENST00000303115.3:c.1193C>A	p.Pro398His	p.P398H	ENST00000303115	NM_002185.3	398	cCt/cAt																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196966	138196966	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	35	168	0	ENST00000237289.4:c.628A>T	p.Ile210Phe	p.I210F	ENST00000237289	NM_001270507.1	210	Att/Ttt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729816	41729816	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1273	141	582	0	ENST00000242208.4:c.713T>A	p.Leu238Gln	p.L238Q	ENST00000242208	NM_002192.2	238	cTg/cAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521468	8521468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	52	257	0	ENST00000356435.5:c.770G>T	p.Cys257Phe	p.C257F	ENST00000356435		257	tGt/tTt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342871	87342871	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	16	135	0	ENST00000277120.3:c.1156G>C	p.Asp386His	p.D386H	ENST00000277120		386	Gat/Cat																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18534722	18534722	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	78	378	0	ENST00000266497.5:c.1780C>A	p.Leu594Met	p.L594M	ENST00000266497		594	Ctg/Atg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245844	46245844	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	66	322	0	ENST00000334344.6:c.3938A>T	p.Gln1313Leu	p.Q1313L	ENST00000334344	NM_152641.2	1313	cAa/cTa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610078	81610078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	50	339	2	ENST00000298171.2:c.1676G>T	p.Gly559Val	p.G559V	ENST00000298171	NM_000369.2	559	gGa/gTa																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7982728	7982728	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	66	267	0	ENST00000319144.4:c.1057C>A	p.Pro353Thr	p.P353T	ENST00000319144	NM_001139.2	353	Ccc/Acc																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33433430	33433430	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	47	206	0	ENST00000335858.7:c.215A>T	p.Glu72Val	p.E72V	ENST00000335858	NM_133629.2	72	gAg/gTg																																																																															
CD79B	974	MSKCC	GRCh37	17	62006684	62006684	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	75	341	0	ENST00000392795.3:c.595G>T	p.Gly199Cys	p.G199C	ENST00000392795	NM_001039933.1	199	Ggc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980783	40980783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	66	398	2	ENST00000373198.4:c.1703C>A	p.Ala568Asp	p.A568D	ENST00000373198	NM_133170.3	568	gCc/gAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933751	39933751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	94	460	0	ENST00000378444.4:c.848C>A	p.Ala283Glu	p.A283E	ENST00000378444	NM_001123385.1	283	gCa/gAa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63409937	63409937	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	145	560	1	ENST00000330258.3:c.3230C>A	p.Pro1077His	p.P1077H	ENST00000330258	NM_152424.3	1077	cCt/cAt																																																																															
AR	367	MSKCC	GRCh37	X	66765480	66765480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	69	276	0	ENST00000374690.3:c.492G>T	p.Leu164Phe	p.L164F	ENST00000374690	NM_000044.3	164	ttG/ttT																																																																															
AR	367	MSKCC	GRCh37	X	66937395	66937395	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1176	122	626	0	ENST00000374690.3:c.2249T>A	p.Met750Lys	p.M750K	ENST00000374690	NM_000044.3	750	aTg/aAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76776957	76776957	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	97	582	1	ENST00000373344.5:c.6995G>T	p.Arg2332Ile	p.R2332I	ENST00000373344	NM_000489.3	2332	aGa/aTa																																																																															
ATRX	546	MSKCC	GRCh37	X	77041467	77041467	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	128	469	0	ENST00000373344.5:c.20+1G>T		p.X7_splice	ENST00000373344	NM_000489.3	7																																																																																
STAG2	10735	MSKCC	GRCh37	X	123215294	123215294	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1133	107	598	0	ENST00000218089.9:c.2840G>C	p.Gly947Ala	p.G947A	ENST00000218089	NM_001042749.1	947	gGc/gCc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220201	1220383	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCAGGTGTGGCTCCCTGCTGGACCTAGCCTTTCCTCTGTCCTGTGTGCCTGGACTTCTGTGACTTCCCAGCTGGGCCTGTGGTGTTTGGGAGGCTCCCAGGCAGCTGCAAAGGGGACCCCTGTGAGGGGCAGGGAGGCCTCGGCCCCAGGACGGGTGTGTGCTGCCCGCAGGTACTTCTGTCA	GCAGGTGTGGCTCCCTGCTGGACCTAGCCTTTCCTCTGTCCTGTGTGCCTGGACTTCTGTGACTTCCCAGCTGGGCCTGTGGTGTTTGGGAGGCTCCCAGGCAGCTGCAAAGGGGACCCCTGTGAGGGGCAGGGAGGCCTCGGCCCCAGGACGGGTGTGTGCTGCCCGCAGGTACTTCTGTCA	-			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			42	52	23	0	ENST00000326873.7:c.465-169_478del		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212566781	212566782	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	50	464	0	ENST00000342788.4:c.1399dup	p.Cys467LeufsTer7	p.C467Lfs*7	ENST00000342788	NM_005235.2	467	tgt/tTgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610153	10610154	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	93	331	0	ENST00000171111.5:c.556_557delinsTT	p.Gly186Phe	p.G186F	ENST00000171111	NM_203500.1	186	GGc/TTc																																																																															
MED12	9968	MSKCC	GRCh37	X	70343060	70343062	+	frameshift_variant	Frame_Shift_Del	DEL	CGG	CGG	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	41	367	0	ENST00000374080.3:c.1601_1603delinsA	p.Ala534GlufsTer3	p.A534Efs*3	ENST00000374080		534	gCGGag/gAag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0011043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	19	246	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0011043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	121	398	0	ENST00000269305.4:c.376-1G>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32183162	32183162	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0011043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	58	420	0	ENST00000375023.3:c.1862G>A	p.Gly621Asp	p.G621D	ENST00000375023	NM_004557.3	621	gGc/gAc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66735696	66735696	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0011043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	97	434	0	ENST00000307102.5:c.516+1G>A		p.X172_splice	ENST00000307102	NM_002755.3	172																																																																																
EP300	2033	MSKCC	GRCh37	22	41527488	41527488	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1104	95	584	0	ENST00000263253.7:c.1379A>T	p.Asp460Val	p.D460V	ENST00000263253	NM_001429.3	460	gAt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0012426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	350	825	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0012426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	77	441	2	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
KDR	3791	MSKCC	GRCh37	4	55948198	55948198	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147627339		P-0012426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	153	558	2	ENST00000263923.4:c.3773C>T	p.Thr1258Met	p.T1258M	ENST00000263923	NM_002253.2	1258	aCg/aTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508932	106508932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	25	245	0	ENST00000359195.3:c.926C>T	p.Thr309Met	p.T309M	ENST00000359195	NM_002649.2	309	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175399	112175400	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0012426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	100	380	0	ENST00000257430.4:c.4110_4111del	p.Pro1372ThrfsTer2	p.P1372Tfs*2	ENST00000257430	NM_000038.5	1370	AAa/a																																																																															
MTOR	2475	MSKCC	GRCh37	1	11317042	11317042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	75	548	0	ENST00000361445.4:c.452G>A	p.Arg151Gln	p.R151Q	ENST00000361445	NM_004958.3	151	cGa/cAa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11307997	11307997	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			213	69	497	0	ENST00000361445.4:c.995G>T	p.Gly332Val	p.G332V	ENST00000361445	NM_004958.3	332	gGg/gTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254996	16254996	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			235	52	294	0	ENST00000375759.3:c.2261G>T	p.Arg754Met	p.R754M	ENST00000375759	NM_015001.2	754	aGg/aTg																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51436168	51436168	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	103	225	0	ENST00000262662.1:c.128A>C	p.Gln43Pro	p.Q43P	ENST00000262662		43	cAg/cCg																																																																															
BCL10	8915	MSKCC	GRCh37	1	85741996	85741996	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			664	196	571	0	ENST00000370580.1:c.40A>G	p.Thr14Ala	p.T14A	ENST00000370580	NM_003921.4	14	Act/Gct																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458276	120458276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			270	35	553	0	ENST00000256646.2:c.7069A>G	p.Met2357Val	p.M2357V	ENST00000256646	NM_024408.3	2357	Atg/Gtg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458452	120458452	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140832430		P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			184	60	463	0	ENST00000256646.2:c.6893G>A	p.Arg2298Gln	p.R2298Q	ENST00000256646	NM_024408.3	2298	cGg/cAg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163318779	163318779	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116669228		P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			221	38	338	1	ENST00000271452.3:c.1169G>A	p.Arg390Gln	p.R390Q	ENST00000271452	NM_145697.2	390	cGa/cAa																																																																															
TET1	80312	MSKCC	GRCh37	10	70441157	70441157	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			239	43	387	0	ENST00000373644.4:c.4832delA	p.Asn1611ThrfsTer13	p.N1611Tfs*13	ENST00000373644	NM_030625.2	1609	gAa/ga																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88635800	88635800	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			323	97	387	0	ENST00000372037.3:c.25A>G	p.Arg9Gly	p.R9G	ENST00000372037	NM_004329.2	9	Aga/Gga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			213	68	432	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625456	69625456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			253	88	659	0	ENST00000334134.2:c.337G>A	p.Ala113Thr	p.A113T	ENST00000334134	NM_005247.2	113	Gcc/Acc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948208	71948209	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			590	161	917	4	ENST00000298229.2:c.2927dupC	p.Pro977ThrfsTer7	p.P977Tfs*7	ENST00000298229	NM_001567.3	974	gcc/gCcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427411	49427411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			504	114	694	0	ENST00000301067.7:c.11077G>T	p.Ala3693Ser	p.A3693S	ENST00000301067	NM_003482.3	3693	Gct/Tct																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120621	115120621	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			564	197	699	0	ENST00000257566.3:c.385G>T	p.Gly129Ter	p.G129*	ENST00000257566	NM_016569.3	129	Gga/Tga																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			349	120	621	4	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																															
AKT1	207	MSKCC	GRCh37	14	105241504	105241504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			356	95	652	1	ENST00000349310.3:c.476G>A	p.Gly159Asp	p.G159D	ENST00000349310	NM_001014432.1	159	gGc/gAc																																																																															
BLM	641	MSKCC	GRCh37	15	91337481	91337481	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	147	481	0	ENST00000355112.3:c.3104A>G	p.Glu1035Gly	p.E1035G	ENST00000355112	NM_000057.2	1035	gAa/gGa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396724	396724	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			314	84	496	0	ENST00000262320.3:c.302T>C	p.Leu101Pro	p.L101P	ENST00000262320	NM_003502.3	101	cTg/cCg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23637567	23637567	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			286	64	510	0	ENST00000261584.4:c.2738A>G	p.His913Arg	p.H913R	ENST00000261584	NM_024675.3	913	cAc/cGc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993731	72993731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			161	59	453	0	ENST00000268489.5:c.314del	p.Pro105ArgfsTer4	p.P105Rfs*4	ENST00000268489	NM_006885.3	105	cCg/cg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89831344	89831345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			584	119	566	0	ENST00000389301.3:c.2730_2731dup	p.Trp911SerfsTer11	p.W911Sfs*11	ENST00000389301	NM_000135.2	911	tgg/tCTgg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16052823	16052823	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			260	86	327	0	ENST00000268712.3:c.851T>C	p.Val284Ala	p.V284A	ENST00000268712	NM_006311.3	284	gTg/gCg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			411	175	557	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			521	38	686	2	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119790	70119790	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			375	156	535	0	ENST00000245479.2:c.792A>T	p.Arg264Ser	p.R264S	ENST00000245479	NM_000346.3	264	agA/agT																																																																															
PMAIP1	5366	MSKCC	GRCh37	18	57567468	57567468	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			258	80	297	0	ENST00000316660.6:c.58+1G>A		p.X20_splice	ENST00000316660	NM_021127.2	20																																																																																
PIK3R2	5296	MSKCC	GRCh37	19	18271744	18271744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			786	148	648	0	ENST00000222254.8:c.431C>T	p.Ser144Phe	p.S144F	ENST00000222254	NM_005027.3	144	tCt/tTt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224130	36224130	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200908859		P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	73	701	0	ENST00000222270.7:c.6680C>T	p.Thr2227Met	p.T2227M	ENST00000222270	NM_014727.1	2227	aCg/aTg																																																																															
RRAS	6237	MSKCC	GRCh37	19	50138855	50138855	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			816	213	882	3	ENST00000246792.3:c.635del	p.Gly212AlafsTer22	p.G212Afs*22	ENST00000246792	NM_006270.3	212	gGc/gc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910258	50910258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	95	574	1	ENST00000440232.2:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000440232	NM_002691.3	505	Cgc/Tgc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918709	50918709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			202	47	435	0	ENST00000440232.2:c.2579C>T	p.Ala860Val	p.A860V	ENST00000440232	NM_002691.3	860	gCg/gTg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39294893	39294893	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			177	51	292	0	ENST00000402219.2:c.89T>C	p.Val30Ala	p.V30A	ENST00000402219	NM_005633.3	30	gTc/gCc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030613	48030613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	97	506	0	ENST00000234420.5:c.3227G>A	p.Arg1076His	p.R1076H	ENST00000234420	NM_000179.2	1076	cGc/cAc																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919674	96919674	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140860906		P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	83	471	1	ENST00000258439.3:c.589C>T	p.Arg197Cys	p.R197C	ENST00000258439	NM_001193304.2	197	Cgc/Tgc																																																																															
CASP8	841	MSKCC	GRCh37	2	202131228	202131228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			260	69	395	0	ENST00000358485.4:c.196C>A	p.Leu66Ile	p.L66I	ENST00000358485	NM_001080125.1	66	Ctt/Att																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31385064	31385064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			386	79	608	0	ENST00000328111.2:c.1449G>T	p.Glu483Asp	p.E483D	ENST00000328111	NM_006892.3	483	gaG/gaT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			125	22	390	0	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42840387	42840387	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			417	149	482	0	ENST00000398585.3:c.1361A>G	p.Asp454Gly	p.D454G	ENST00000398585	NM_001135099.1	454	gAc/gGc																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22160171	22160171	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			286	54	337	0	ENST00000215832.6:c.460A>G	p.Asn154Asp	p.N154D	ENST00000215832	NM_002745.4	154	Aac/Gac																																																																															
EP300	2033	MSKCC	GRCh37	22	41548348	41548348	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			259	47	271	0	ENST00000263253.7:c.3140delA	p.Lys1047ArgfsTer12	p.K1047Rfs*12	ENST00000263253	NM_001429.3	1046	Aaa/aa																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458270	12458270	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			507	132	562	1	ENST00000287820.6:c.892del	p.Leu298CysfsTer38	p.L298Cfs*38	ENST00000287820	NM_015869.4	296	aCc/ac																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940115	49940115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			475	170	640	0	ENST00000296474.3:c.928G>T	p.Gly310Trp	p.G310W	ENST00000296474	NM_002447.2	310	Ggg/Tgg																																																																															
ATR	545	MSKCC	GRCh37	3	142231210	142231211	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			389	93	506	0	ENST00000350721.4:c.4743_4744del	p.Phe1582LeufsTer4	p.F1582Lfs*4	ENST00000350721	NM_001184.3	1581	gtGTtc/gttc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			374	93	579	8	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681714	30681714	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			504	126	455	0	ENST00000376406.3:c.383G>T	p.Cys128Phe	p.C128F	ENST00000376406	NM_014641.2	128	tGc/tTc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323289	31323289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			147	13	130	0	ENST00000412585.2:c.700C>A	p.Pro234Thr	p.P234T	ENST00000412585	NM_005514.6	234	Cct/Act																																																																															
STK19	8859	MSKCC	GRCh37	6	31940100	31940100	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			837	189	719	0	ENST00000375331.2:c.242T>A	p.Val81Glu	p.V81E	ENST00000375331	NM_004197.1	81	gTa/gAa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864489	162864490	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			126	17	347	0	ENST00000366898.1:c.23dup	p.Asn8LysfsTer13	p.N8Kfs*13	ENST00000366898	NM_004562.2	8	aac/aaAc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	33	613	0	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			190	59	301	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879594	151879596	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			211	17	298	2	ENST00000262189.6:c.5349_5351del	p.Gln1787del	p.Q1787del	ENST00000262189	NM_170606.2	1783	caGCAa/caa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046323	69046323	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			184	38	472	0	ENST00000288368.4:c.3796G>T	p.Val1266Phe	p.V1266F	ENST00000288368	NM_024870.2	1266	Gtt/Ttt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485909	8485909	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			157	33	404	0	ENST00000356435.5:c.2908C>T	p.Gln970Ter	p.Q970*	ENST00000356435		970	Cag/Tag																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87359956	87359956	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137873897		P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			195	55	286	0	ENST00000277120.3:c.1264G>A	p.Val422Ile	p.V422I	ENST00000277120		422	Gtc/Atc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907165	101907165	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			155	29	306	0	ENST00000374994.4:c.1129del	p.Arg377GlyfsTer12	p.R377Gfs*12	ENST00000374994	NM_004612.2	375	acA/ac																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249927	110249927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	130	530	0	ENST00000374672.4:c.748G>A	p.Val250Ile	p.V250I	ENST00000374672	NM_004235.4	250	Gtc/Atc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417370	139417370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	161	644	1	ENST00000277541.6:c.674C>T	p.Ser225Leu	p.S225L	ENST00000277541	NM_017617.3	225	tCg/tTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53246393	53246393	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			345	93	741	0	ENST00000375401.3:c.589del	p.Leu197TyrfsTer37	p.L197Yfs*37	ENST00000375401	NM_004187.3	197	Cta/ta																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTTGTT			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			276	32	192	0	ENST00000375856.3:c.79_84dup	p.Asn27_Asn28dup	p.N27_N28dup	ENST00000375856	NM_003749.2	27	-/AACAAC																																																																															
PGR	5241	MSKCC	GRCh37	11	100962610	100962610	+	splice_region_variant,intron_variant	Splice_Region	DEL	A	A	-			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			194	37	337	0	ENST00000325455.5:c.1790-3del		p.X597_splice	ENST00000325455	NM_001202474.3	597																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151836879	151836879	+	splice_region_variant,intron_variant	Splice_Region	DEL	A	A	-			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			197	125	434	3	ENST00000262189.6:c.14344-3delT		p.X4782_splice	ENST00000262189	NM_170606.2	4782																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52676064	52676067	+	splice_region_variant,intron_variant	Splice_Region	DEL	ACAA	ACAA	-			P-0018118-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			151	40	267	0	ENST00000394830.3:c.996-6_996-3del		p.X332_splice	ENST00000394830	NM_018313.4	332																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	298	797	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MGA	23269	MSKCC	GRCh37	15	41988310	41988310	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	349	807	2	ENST00000219905.7:c.1102G>T	p.Ala368Ser	p.A368S	ENST00000219905	NM_001164273.1	368	Gcc/Tcc																																																																															
CBFB	865	MSKCC	GRCh37	16	67063316	67063319	+	missense_variant	Missense_Mutation	ONP	GCGC	GCGC	TCTG			P-0022602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	158	492	1	ENST00000412916.2:c.6_9delinsTCTG	p.Arg3Leu	p.R3L	ENST00000412916		2	ccGCGC/ccTCTG																																																																															
STK11	6794	MSKCC	GRCh37	19	1220579	1220579	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0022602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	362	908	0	ENST00000326873.7:c.598-1G>T		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																																
RUNX1	861	MSKCC	GRCh37	21	36259209	36259210	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0022602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	329	1048	3	ENST00000300305.3:c.281_282delinsAA	p.Ser94Lys	p.S94K	ENST00000300305		94	aGC/aAA																																																																															
NF2	4771	MSKCC	GRCh37	22	30054229	30054229	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	228	704	0	ENST00000338641.4:c.651C>A	p.Tyr217Ter	p.Y217*	ENST00000338641	NM_000268.3	217	taC/taA																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508950	106508950	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	210	523	1	ENST00000359195.3:c.944T>C	p.Leu315Pro	p.L315P	ENST00000359195	NM_002649.2	315	cTa/cCa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485897	8485897	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	186	501	0	ENST00000356435.5:c.2920C>A	p.Pro974Thr	p.P974T	ENST00000356435		974	Cca/Aca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913389		P-0022602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	282	760	1	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411315	63411315	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	342	1089	0	ENST00000330258.3:c.1852G>C	p.Ala618Pro	p.A618P	ENST00000330258	NM_152424.3	618	Gct/Cct																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0024657-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	154	302	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0024657-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			696	140	504	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319836	8319836	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024657-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	215	403	0	ENST00000356435.5:c.5665A>G	p.Thr1889Ala	p.T1889A	ENST00000356435		1889	Aca/Gca																																																																															
SMO	6608	MSKCC	GRCh37	7	128829195	128829195	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	31	212	0	ENST00000249373.3:c.203C>G	p.Ala68Gly	p.A68G	ENST00000249373	NM_005631.4	68	gCc/gGc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46733200	46733200	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	79	616	1	ENST00000371975.4:c.961G>T	p.Val321Leu	p.V321L	ENST00000371975	NM_003579.3	321	Gtg/Ttg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999645	100999645	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	137	939	0	ENST00000325455.5:c.157A>T	p.Ile53Phe	p.I53F	ENST00000325455	NM_001202474.3	53	Atc/Ttc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562919	21562919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	85	459	0	ENST00000382592.4:c.1000del	p.Arg334AlafsTer99	p.R334Afs*99	ENST00000382592	NM_014572.2	334	Cgc/gc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	335	464	0	ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0032363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	153	426	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
ATRX	546	MSKCC	GRCh37	X	76939999	76939999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	196	298	1	ENST00000373344.5:c.749G>A	p.Arg250Gln	p.R250Q	ENST00000373344	NM_000489.3	250	cGa/cAa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120707	115120707	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	126	679	0	ENST00000257566.3:c.299A>C	p.Glu100Ala	p.E100A	ENST00000257566	NM_016569.3	100	gAg/gCg																																																																															
APC	324	MSKCC	GRCh37	5	112175222	112175223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0032363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	46	222	0	ENST00000257430.4:c.3932_3933dup	p.Gly1312LeufsTer10	p.G1312Lfs*10	ENST00000257430	NM_000038.5	1311	att/aTTtt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945052	151945052	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	49	596	0	ENST00000262189.6:c.2467A>T	p.Ile823Phe	p.I823F	ENST00000262189	NM_170606.2	823	Att/Ttt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5066746	5066746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	63	347	0	ENST00000381652.3:c.1283G>A	p.Ser428Asn	p.S428N	ENST00000381652	NM_004972.3	428	aGt/aAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911614	114911614	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	CCGGC			P-0032363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	97	503	0	ENST00000543371.1:c.1132delinsCCGGC	p.Ala378ProfsTer46	p.A378Pfs*46	ENST00000543371	NM_001198531.1	378	Gcg/CCGGCcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	222	413	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587780070		P-0033222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	56	547	0	ENST00000269305.4:c.535C>A	p.His179Asn	p.H179N	ENST00000269305	NM_001126112.2	179	Cat/Aat																																																																															
RARA	5914	MSKCC	GRCh37	17	38512393	38512393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	49	562	0	ENST00000254066.5:c.1304G>A	p.Gly435Asp	p.G435D	ENST00000254066	NM_000964.3	435	gGt/gAt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553497	106553497	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	21	275	0	ENST00000369096.4:c.1462C>A	p.Leu488Ile	p.L488I	ENST00000369096	NM_001198.3	488	Ctt/Att																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0033683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	196	361	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	157	577	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
RARA	5914	MSKCC	GRCh37	17	38510620	38510620	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	196	544	0	ENST00000254066.5:c.874C>G	p.Leu292Val	p.L292V	ENST00000254066	NM_000964.3	292	Ctg/Gtg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399350	139399350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	49	578	1	ENST00000277541.6:c.4793G>A	p.Arg1598His	p.R1598H	ENST00000277541	NM_017617.3	1598	cGc/cAc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294603	1294603	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	16	170	0	ENST00000310581.5:c.398G>C	p.Gly133Ala	p.G133A	ENST00000310581	NM_198253.2	133	gGg/gCg																																																																															
TET1	80312	MSKCC	GRCh37	10	70446212	70446212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			482	83	608	0	ENST00000373644.4:c.5152G>A	p.Glu1718Lys	p.E1718K	ENST00000373644	NM_030625.2	1718	Gag/Aag																																																																															
NF2	4771	MSKCC	GRCh37	22	30035154	30035154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	206	606	0	ENST00000338641.4:c.316G>A	p.Glu106Lys	p.E106K	ENST00000338641	NM_000268.3	106	Gaa/Aaa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47058705	47058706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	237	540	0	ENST00000409792.3:c.7572dup	p.Lys2525Ter	p.K2525*	ENST00000409792	NM_014159.6	2524	-/T																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838389	156838389	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	85	755	0	ENST00000524377.1:c.667G>C	p.Glu223Gln	p.E223Q	ENST00000524377	NM_002529.3	223	Gag/Cag																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953288	17953288	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	153	704	1	ENST00000458235.1:c.698C>G	p.Ser233Trp	p.S233W	ENST00000458235	NM_000215.3	233	tCg/tGg																																																																															
PARP1	142	MSKCC	GRCh37	1	226568830	226568830	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	82	742	0	ENST00000366794.5:c.1239G>C	p.Glu413Asp	p.E413D	ENST00000366794	NM_001618.3	413	gaG/gaC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434211	49434211	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			799	291	968	0	ENST00000301067.7:c.7342G>C	p.Asp2448His	p.D2448H	ENST00000301067	NM_003482.3	2448	Gac/Cac																																																																															
MDM2	4193	MSKCC	GRCh37	12	69229748	69229748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			486	38	376	0	ENST00000462284.1:c.824C>T	p.Ser275Leu	p.S275L	ENST00000462284	NM_002392.5	275	tCa/tTa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346334	89346334	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	133	462	0	ENST00000301030.4:c.6616G>C	p.Glu2206Gln	p.E2206Q	ENST00000301030	NM_001256183.1	2206	Gag/Cag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40757422	40757422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			694	98	672	0	ENST00000373198.4:c.2876C>T	p.Ser959Phe	p.S959F	ENST00000373198	NM_133170.3	959	tCt/tTt																																																																															
EP300	2033	MSKCC	GRCh37	22	41525947	41525947	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			560	211	602	0	ENST00000263253.7:c.1222A>T	p.Arg408Ter	p.R408*	ENST00000263253	NM_001429.3	408	Aga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480346	89480346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			528	32	361	0	ENST00000336596.2:c.2183G>A	p.Arg728Gln	p.R728Q	ENST00000336596	NM_005233.5	728	cGa/cAa																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149375021	149375021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1294	130	816	0	ENST00000360632.3:c.73G>C	p.Asp25His	p.D25H	ENST00000360632	NM_015472.4	25	Gac/Cac																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185167750	185167750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			801	187	594	0	ENST00000265026.3:c.1073C>T	p.Ser358Phe	p.S358F	ENST00000265026	NM_004721.4	358	tCt/tTt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191235	185191235	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			660	149	518	0	ENST00000265026.3:c.2116G>C	p.Asp706His	p.D706H	ENST00000265026	NM_004721.4	706	Gac/Cac																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191361	185191361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			874	242	679	0	ENST00000265026.3:c.2242G>A	p.Ala748Thr	p.A748T	ENST00000265026	NM_004721.4	748	Gct/Act																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0034078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	290	424	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	247	433	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576101	88576101	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1351	147	838	0	ENST00000360948.2:c.1572C>G	p.His524Gln	p.H524Q	ENST00000360948	NM_001012338.2	524	caC/caG																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101709	27101751	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGGTAAGGAGATCTTCCTCATTCGGTTGCCTAATCTGCCCCT	TTGGTAAGGAGATCTTCCTCATTCGGTTGCCTAATCTGCCCCT	-			P-0034078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	208	900	0	ENST00000324856.7:c.4993_4993+42del		p.X1665_splice	ENST00000324856	NM_006015.4	1665																																																																																
KDM5A	5927	MSKCC	GRCh37	12	465703	465703	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0034078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	83	518	1	ENST00000399788.2:c.673T>A	p.Ser225Thr	p.S225T	ENST00000399788	NM_001042603.1	225	Tca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574004	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAACATCTCGAAGCT			P-0034078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	422	851	0	ENST00000269305.4:c.1023_1024insAGCTTCGAGATGTTC	p.Phe341_Arg342insSerPheGluMetPhe	p.F341_R342insSFEMF	ENST00000269305	NM_001126112.2	341	-/AGCTTCGAGATGTTC																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099277	4099277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	33	893	0	ENST00000262948.5:c.841C>T	p.Arg281Trp	p.R281W	ENST00000262948	NM_030662.3	281	Cgg/Tgg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867107	45867107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	226	656	0	ENST00000391945.4:c.1012G>A	p.Glu338Lys	p.E338K	ENST00000391945	NM_000400.3	338	Gag/Aag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545825	106545825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	50	475	0	ENST00000359195.3:c.3302C>T	p.Ser1101Leu	p.S1101L	ENST00000359195	NM_002649.2	1101	tCa/tTa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881103	37881103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3009	212	881	1	ENST00000269571.5:c.2432G>A	p.Arg811Gln	p.R811Q	ENST00000269571		811	cGg/cAg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922943	44922943	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	11	327	0	ENST00000377967.4:c.1805del	p.Gly602GlufsTer23	p.G602Efs*23	ENST00000377967	NM_021140.2	602	Gga/ga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061221	38061232	+	inframe_deletion	In_Frame_Del	DEL	GTTCTCGAACAT	GTTCTCGAACAT	-			P-0034300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	164	749	0	ENST00000250448.2:c.757_768del	p.Met253_Asn256del	p.M253_N256del	ENST00000250448	NM_004496.3	253	ATGTTCGAGAAC/-																																																																															
SMYD3	64754	MSKCC	GRCh37	1	245927408	245927408	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	412	695	0	ENST00000388985.4:c.1120A>G	p.Met374Val	p.M374V	ENST00000388985		374	Atg/Gtg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911964	32911964	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	205	749	0	ENST00000380152.3:c.3472G>T	p.Glu1158Ter	p.E1158*	ENST00000380152		1158	Gaa/Taa																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430853	181430853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	312	1128	3	ENST00000325404.1:c.705G>A	p.Met235Ile	p.M235I	ENST00000325404	NM_003106.3	235	atG/atA																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289512	33289512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	343	1153	0	ENST00000374542.5:c.191A>G	p.Glu64Gly	p.E64G	ENST00000374542	NM_001141970.1	64	gAg/gGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268987	55268987	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	291	887	0	ENST00000275493.2:c.3053T>A	p.Ile1018Asn	p.I1018N	ENST00000275493	NM_005228.3	1018	aTc/aAc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36923358	36923358	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	189	751	0	ENST00000358127.4:c.904G>T	p.Val302Leu	p.V302L	ENST00000358127	NM_001280556.1	302	Gtg/Ttg																																																																															
ABL1	25	MSKCC	GRCh37	9	133760448	133760448	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	158	823	0	ENST00000318560.5:c.2771G>C	p.Gly924Ala	p.G924A	ENST00000318560	NM_005157.4	924	gGg/gCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0034301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	435	954	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589619	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAGAATATGATA			P-0034301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	84	261	0	ENST00000274335.5:c.1384_1395dup	p.Glu462_Arg465dup	p.E462_R465dup	ENST00000274335		462	cga/cGAGAATATGATAga																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933162	36933162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	252	745	0	ENST00000361632.4:c.1955C>T	p.Pro652Leu	p.P652L	ENST00000361632		652	cCc/cTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161268	56161269	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0034301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	50	560	0	ENST00000399503.3:c.1138_1139delTT	p.Leu380LysfsTer4	p.L380Kfs*4	ENST00000399503	NM_005921.1	379	acTTta/acta																																																																															
RAD50	10111	MSKCC	GRCh37	5	131925428	131925428	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	144	271	0	ENST00000265335.6:c.1351A>G	p.Ser451Gly	p.S451G	ENST00000265335		451	Agt/Ggt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845367	151845367	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	139	875	0	ENST00000262189.6:c.13645del	p.Arg4549AlafsTer77	p.R4549Afs*77	ENST00000262189	NM_170606.2	4549	Cgc/gc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	150	520	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
RB1	5925	MSKCC	GRCh37	13	48939051	48939068	+	inframe_deletion	In_Frame_Del	DEL	AATTTTATACCTTTTATG	AATTTTATACCTTTTATG	-			P-0034351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	26	429	0	ENST00000267163.4:c.887_904del	p.Phe296_Asn301del	p.F296_N301del	ENST00000267163	NM_000321.2	295	AATTTTATACCTTTTATG/-																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	113	699	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	144	846	2	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845261	151845261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	94	506	0	ENST00000262189.6:c.13751G>A	p.Arg4584Gln	p.R4584Q	ENST00000262189	NM_170606.2	4584	cGg/cAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0034357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	104	304	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843595	156843595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139875058		P-0034357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	95	826	1	ENST00000524377.1:c.1021G>A	p.Val341Met	p.V341M	ENST00000524377	NM_002529.3	341	Gtg/Atg																																																																															
NF1	4763	MSKCC	GRCh37	17	29422337	29422337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	64	392	0	ENST00000358273.4:c.10C>T	p.His4Tyr	p.H4Y	ENST00000358273	NM_001042492.2	4	Cac/Tac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602679	10602679	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	124	805	0	ENST00000171111.5:c.899A>G	p.Tyr300Cys	p.Y300C	ENST00000171111	NM_203500.1	300	tAc/tGc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101834	11101841	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGGTGG	GGAGGTGG	-			P-0034357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	80	666	0	ENST00000344626.4:c.1254_1261del	p.Gln418HisfsTer17	p.Q418Hfs*17	ENST00000344626	NM_003072.3	418	caGGAGGTGGtg/catg																																																																															
TEK	7010	MSKCC	GRCh37	9	27206678	27206678	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	82	479	0	ENST00000380036.4:c.2463G>C	p.Trp821Cys	p.W821C	ENST00000380036	NM_000459.3	821	tgG/tgC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	235	395	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	326	515	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045016	47045016	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0034373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	135	279	0	ENST00000329236.7:c.2108C>G	p.Ser703Ter	p.S703*	ENST00000329236	NM_001204466.1	703	tCa/tGa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18576885	18576885	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	53	429	2	ENST00000266497.5:c.2293A>C	p.Lys765Gln	p.K765Q	ENST00000266497		765	Aag/Cag																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473618	67473618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	503	485	0	ENST00000327367.4:c.698G>T	p.Cys233Phe	p.C233F	ENST00000327367	NM_005902.3	233	tGc/tTc																																																																															
CIC	23152	MSKCC	GRCh37	19	42794449	42794449	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	377	683	0	ENST00000575354.2:c.1529T>A	p.Leu510Gln	p.L510Q	ENST00000575354	NM_015125.3	510	cTg/cAg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670774	134670774	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	226	396	1	ENST00000398015.3:c.685G>T	p.Ala229Ser	p.A229S	ENST00000398015	NM_004441.4	229	Gca/Tca																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880959	134880959	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	121	459	0	ENST00000398015.3:c.1522G>T	p.Ala508Ser	p.A508S	ENST00000398015	NM_004441.4	508	Gcc/Tcc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138431116	138431116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	214	334	0	ENST00000289153.2:c.1333G>T	p.Val445Phe	p.V445F	ENST00000289153	NM_006219.2	445	Gtt/Ttt																																																																															
TET2	54790	MSKCC	GRCh37	4	106193827	106193827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	191	299	0	ENST00000380013.4:c.4289G>T	p.Gly1430Val	p.G1430V	ENST00000380013	NM_001127208.2	1430	gGg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151876931	151876931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	147	256	0	ENST00000262189.6:c.7430C>T	p.Pro2477Leu	p.P2477L	ENST00000262189	NM_170606.2	2477	cCt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574026	7574026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	464	555	0	ENST00000269305.4:c.1001G>T	p.Gly334Val	p.G334V	ENST00000269305	NM_001126112.2	334	gGg/gTg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484634	57484634	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0034475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	417	493	0	ENST00000371085.3:c.718G>T	p.Asp240Tyr	p.D240Y	ENST00000371085	NM_000516.4	240	Gat/Tat																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735457	40735457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	66	669	0	ENST00000373198.4:c.3416G>A	p.Arg1139Gln	p.R1139Q	ENST00000373198	NM_133170.3	1139	cGg/cAg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028646	12028646	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	103	371	0	ENST00000353533.5:c.849del	p.Tyr284MetfsTer34	p.Y284Mfs*34	ENST00000353533	NM_003010.3	283	ggA/gg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061249	38061249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	287	522	1	ENST00000250448.2:c.740A>G	p.His247Arg	p.H247R	ENST00000250448	NM_004496.3	247	cAc/cGc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163749	152163760	+	protein_altering_variant	In_Frame_Del	DEL	GACGCCAGGGTG	GACGCCAGGGTG	CAC			P-0034496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	174	417	1	ENST00000206249.3:c.470_481delinsCAC	p.Arg157_Gly161delinsProArg	p.R157_G161delinsPR	ENST00000206249	NM_000125.3	157	cGACGCCAGGGTGgc/cCACgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0034502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	95	416	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	92	724	0	ENST00000269305.4:c.808T>G	p.Phe270Val	p.F270V	ENST00000269305	NM_001126112.2	270	Ttt/Gtt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692792	89692792	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	43	416	0	ENST00000371953.3:c.277del	p.His93IlefsTer6	p.H93Ifs*6	ENST00000371953	NM_000314.4	92	gaC/ga																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0034512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	235	479	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	124	573	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52724360	52724360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	53	453	1	ENST00000322088.6:c.1492C>T	p.Arg498Cys	p.R498C	ENST00000322088	NM_014225.5	498	Cgc/Tgc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155322	185155322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	121	393	0	ENST00000265026.3:c.563G>A	p.Arg188Gln	p.R188Q	ENST00000265026	NM_004721.4	188	cGg/cAg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131976443	131976443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	435	512	0	ENST00000265335.6:c.3698C>T	p.Pro1233Leu	p.P1233L	ENST00000265335		1233	cCa/cTa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139404194	139404194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	128	562	0	ENST00000277541.6:c.2960G>T	p.Cys987Phe	p.C987F	ENST00000277541	NM_017617.3	987	tGc/tTc																																																																															
TET1	80312	MSKCC	GRCh37	10	70405103	70405103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199844508		P-0034541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	150	462	0	ENST00000373644.4:c.2617G>A	p.Val873Ile	p.V873I	ENST00000373644	NM_030625.2	873	Gtt/Att																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	177	506	0	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0034541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	111	367	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092809	27092809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	317	512	0	ENST00000324856.7:c.2830C>T	p.Gln944Ter	p.Q944*	ENST00000324856	NM_006015.4	944	Cag/Tag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	138	359	0	ENST00000250448.2:c.798C>G	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttG																																																																															
AKT1	207	MSKCC	GRCh37	14	105239420	105239420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	310	465	0	ENST00000349310.3:c.967G>A	p.Asp323Asn	p.D323N	ENST00000349310	NM_001014432.1	323	Gac/Aac																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178143	56178143	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0034541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	202	309	0	ENST00000399503.3:c.3116C>G	p.Ser1039Ter	p.S1039*	ENST00000399503	NM_005921.1	1039	tCa/tGa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11314000	11314000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	349	562	0	ENST00000361445.4:c.736G>A	p.Asp246Asn	p.D246N	ENST00000361445	NM_004958.3	246	Gat/Aat																																																																															
PGR	5241	MSKCC	GRCh37	11	100999768	100999768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	184	524	0	ENST00000325455.5:c.34C>T	p.Pro12Ser	p.P12S	ENST00000325455	NM_001202474.3	12	Ccc/Tcc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21620105	21620105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	136	558	0	ENST00000382592.4:c.61G>A	p.Glu21Lys	p.E21K	ENST00000382592	NM_014572.2	21	Gag/Aag																																																																															
BLM	641	MSKCC	GRCh37	15	91292865	91292865	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	135	519	0	ENST00000355112.3:c.367C>G	p.Gln123Glu	p.Q123E	ENST00000355112	NM_000057.2	123	Caa/Gaa																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217638	7217638	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	173	511	0	ENST00000380728.2:c.289G>T	p.Glu97Ter	p.E97*	ENST00000380728		97	Gaa/Taa																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217855	7217858	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	-			P-0034541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	182	587	0	ENST00000380728.2:c.153_156del	p.Lys53ArgfsTer9	p.K53Rfs*9	ENST00000380728		51	agGAAG/ag																																																																															
NF1	4763	MSKCC	GRCh37	17	29667516	29667530	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGCCAGGACTCGCC	TTGCCAGGACTCGCC	-			P-0034541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	150	389	0	ENST00000358273.4:c.6922-6_6930del		p.X2308_splice	ENST00000358273	NM_001042492.2	2308																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5207935	5207935	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0034541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	134	522	0	ENST00000357368.4:c.5776G>T	p.Glu1926Ter	p.E1926*	ENST00000357368	NM_002850.3	1926	Gag/Tag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098742	178098742	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	163	513	0	ENST00000397062.3:c.303C>G	p.Asn101Lys	p.N101K	ENST00000397062	NM_006164.4	101	aaC/aaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0034543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	191	551	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70342597	70342597	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	99	592	0	ENST00000374080.3:c.1358T>C	p.Ile453Thr	p.I453T	ENST00000374080		453	aTt/aCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	171	488	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0034566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	194	603	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0034566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	86	331	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411735	63411735	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	132	354	0	ENST00000330258.3:c.1432G>T	p.Gly478Ter	p.G478*	ENST00000330258	NM_152424.3	478	Gga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	142	414	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501191		P-0034590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	11	479	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42860398	42860398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	27	503	0	ENST00000398585.3:c.479C>T	p.Ser160Leu	p.S160L	ENST00000398585	NM_001135099.1	160	tCa/tTa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35861085	35861085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	20	297	0	ENST00000303115.3:c.214G>A	p.Glu72Lys	p.E72K	ENST00000303115	NM_002185.3	72	Gaa/Aaa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600326	10600326	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0034605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	50	643	0	ENST00000171111.5:c.1529C>T	p.Ala510Val	p.A510V	ENST00000171111	NM_203500.1	510	gCa/gTa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971137	21971137	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	45	423	1	ENST00000304494.5:c.221A>G	p.Asp74Gly	p.D74G	ENST00000304494	NM_000077.4	74	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578503	7578503	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	228	856	0	ENST00000269305.4:c.427del	p.Val143CysfsTer27	p.V143Cfs*27	ENST00000269305	NM_001126112.2	143	Gtg/tg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437782	110437782	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	58	609	0	ENST00000375856.3:c.619C>G	p.Leu207Val	p.L207V	ENST00000375856	NM_003749.2	207	Ctg/Gtg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299049	15299049	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	57	567	0	ENST00000263388.2:c.1489T>C	p.Ser497Pro	p.S497P	ENST00000263388	NM_000435.2	497	Tcg/Ccg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845798	151845798	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	225	778	0	ENST00000262189.6:c.13214G>C	p.Cys4405Ser	p.C4405S	ENST00000262189	NM_170606.2	4405	tGt/tCt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411717	63411717	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	66	924	0	ENST00000330258.3:c.1450G>C	p.Gly484Arg	p.G484R	ENST00000330258	NM_152424.3	484	Ggt/Cgt																																																																															
ATRX	546	MSKCC	GRCh37	X	76855290	76855290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0034628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	116	214	0	ENST00000373344.5:c.5698-1G>A		p.X1900_splice	ENST00000373344	NM_000489.3	1900																																																																																
MEN1	4221	MSKCC	GRCh37	11	64574544	64574564	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAGGTTCCCTAAGGCCATG	GCCAGGTTCCCTAAGGCCATG	CCCAGGCCAT			P-0034628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	445	716	2	ENST00000337652.1:c.846_866delinsATGGCCTGGG	p.Met283TrpfsTer35	p.M283Wfs*35	ENST00000337652	NM_130803.2	282	ccCATGGCCTTAGGGAACCTGGCa/ccATGGCCTGGGa																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643399	38643399	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0034628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	189	608	0	ENST00000299084.4:c.869C>G	p.Ser290Ter	p.S290*	ENST00000299084	NM_152594.2	290	tCa/tGa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64574564	64574564	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	397	680	0	ENST00000337652.1:c.846del	p.Met283TrpfsTer3	p.M283Wfs*3	ENST00000337652	NM_130803.2	282	ccC/cc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910686	32910686	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	69	572	0	ENST00000380152.3:c.2194G>T	p.Glu732Ter	p.E732*	ENST00000380152		732	Gag/Tag																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004633	150004633	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	82	729	0	ENST00000253339.5:c.1592del	p.Pro531LeufsTer10	p.P531Lfs*10	ENST00000253339		531	cCt/ct																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319920	8319920	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	81	509	0	ENST00000356435.5:c.5581T>A	p.Leu1861Met	p.L1861M	ENST00000356435		1861	Ttg/Atg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390904	139390908	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGT	CAGGT	ACTG			P-0034634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	29	843	1	ENST00000277541.6:c.7283_7287delinsCAGT	p.His2428ProfsTer7	p.H2428Pfs*7	ENST00000277541	NM_017617.3	2428	cACCTG/cCAGT																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918596	44918597	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0034639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	191	279	0	ENST00000377967.4:c.1083_1084del	p.Tyr362Ter	p.Y362*	ENST00000377967	NM_021140.2	360	aCT/a																																																																															
APC	324	MSKCC	GRCh37	5	112175921	112175921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	52	226	0	ENST00000257430.4:c.4630G>T	p.Glu1544Ter	p.E1544*	ENST00000257430	NM_000038.5	1544	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0034639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	27	308	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	184	477	1	ENST00000347630.2:c.304T>A	p.Phe102Ile	p.F102I	ENST00000347630	NM_001007230.1	102	Ttc/Atc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47108606	47108606	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0034639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	140	311	0	ENST00000409792.3:c.6063G>C	p.Glu2021Asp	p.E2021D	ENST00000409792	NM_014159.6	2021	gaG/gaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	139	413	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0034641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	205	625	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24159112	24159112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	158	319	0	ENST00000263121.7:c.784G>A	p.Val262Ile	p.V262I	ENST00000263121	NM_003073.3	262	Gtc/Atc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132522	11132522	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778175819		P-0034644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	58	554	0	ENST00000344626.4:c.2738C>T	p.Pro913Leu	p.P913L	ENST00000344626	NM_003072.3	913	cCg/cTg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39742704	39742704	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	162	394	0	ENST00000361337.2:c.1547C>G	p.Pro516Arg	p.P516R	ENST00000361337	NM_003286.2	516	cCa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577540	7577554	+	inframe_deletion	In_Frame_Del	DEL	GTTCATGCCGCCCAT	GTTCATGCCGCCCAT	-			P-0034644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	387	604	0	ENST00000269305.4:c.727_741del	p.Met243_Asn247del	p.M243_N247del	ENST00000269305	NM_001126112.2	243	ATGGGCGGCATGAAC/-																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355107	15355107	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	231	788	0	ENST00000263377.2:c.2516T>C	p.Leu839Pro	p.L839P	ENST00000263377	NM_058243.2	839	cTg/cCg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607552	46607552	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	208	704	0	ENST00000263734.3:c.1741A>T	p.Ser581Cys	p.S581C	ENST00000263734	NM_001430.4	581	Agt/Tgt																																																																															
ATR	545	MSKCC	GRCh37	3	142177873	142177873	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	53	299	0	ENST00000350721.4:c.7430A>G	p.His2477Arg	p.H2477R	ENST00000350721	NM_001184.3	2477	cAt/cGt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55152071	55152071	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	177	564	0	ENST00000257290.5:c.2503T>G	p.Cys835Gly	p.C835G	ENST00000257290	NM_006206.4	835	Tgt/Ggt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630302	187630302	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	162	572	0	ENST00000441802.2:c.680G>T	p.Arg227Leu	p.R227L	ENST00000441802	NM_005245.3	227	cGt/cTt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372097	55372097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	334	431	1	ENST00000297316.4:c.787C>A	p.Pro263Thr	p.P263T	ENST00000297316	NM_022454.3	263	Ccg/Acg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0034645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	193	582	2	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913500		P-0034645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	77	307	1	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140481399	140481399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	106	382	0	ENST00000288602.6:c.1409C>T	p.Thr470Ile	p.T470I	ENST00000288602	NM_004333.4	470	aCa/aTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	306	534	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519922		P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	262	841	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	400	899	1	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44950005	44950005	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	70	293	0	ENST00000377967.4:c.3774G>A	p.Trp1258Ter	p.W1258*	ENST00000377967	NM_021140.2	1258	tgG/tgA																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926878	112926878	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	112	781	0	ENST00000351677.2:c.1498C>T	p.Gln500Ter	p.Q500*	ENST00000351677	NM_002834.3	500	Cag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41514570	41514570	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	45	461	0	ENST00000373198.4:c.91G>T	p.Gly31Cys	p.G31C	ENST00000373198	NM_133170.3	31	Ggc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259513	16259513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	72	491	0	ENST00000375759.3:c.6778G>A	p.Glu2260Lys	p.E2260K	ENST00000375759	NM_015001.2	2260	Gag/Aag																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518541	204518541	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	103	305	0	ENST00000367182.3:c.1204G>C	p.Glu402Gln	p.E402Q	ENST00000367182	NM_001278516.1	402	Gaa/Caa																																																																															
CBL	867	MSKCC	GRCh37	11	119144732	119144732	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	74	413	0	ENST00000264033.4:c.745C>T	p.Gln249Ter	p.Q249*	ENST00000264033	NM_005188.3	249	Cag/Tag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863463	57863463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	88	506	0	ENST00000228682.2:c.1558C>T	p.Pro520Ser	p.P520S	ENST00000228682	NM_005269.2	520	Ccc/Tcc																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68290324	68290324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	158	480	0	ENST00000487270.1:c.64C>A	p.His22Asn	p.H22N	ENST00000487270	NM_133509.3	22	Cat/Aat																																																																															
MGA	23269	MSKCC	GRCh37	15	42028438	42028438	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	132	476	1	ENST00000219905.7:c.3976del	p.Gln1326ArgfsTer10	p.Q1326Rfs*10	ENST00000219905	NM_001164273.1	1326	Cag/ag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829935	72829935	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	109	766	0	ENST00000268489.5:c.6646A>G	p.Ile2216Val	p.I2216V	ENST00000268489	NM_006885.3	2216	Atc/Gtc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341546	89341546	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	79	597	0	ENST00000301030.4:c.7524G>T	p.Gln2508His	p.Q2508H	ENST00000301030	NM_001256183.1	2508	caG/caT																																																																															
XPO1	7514	MSKCC	GRCh37	2	61711222	61711222	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	85	507	0	ENST00000401558.2:c.2527G>T	p.Glu843Ter	p.E843*	ENST00000401558	NM_003400.3	843	Gaa/Taa																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128015280	128015280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	46	502	1	ENST00000285398.2:c.2241G>A	p.Met747Ile	p.M747I	ENST00000285398	NM_000122.1	747	atG/atA																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41408903	41408904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	55	414	0	ENST00000373198.4:c.522dup	p.Gly175TrpfsTer49	p.G175Wfs*49	ENST00000373198	NM_133170.3	174	-/T																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31401618	31401618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	117	676	0	ENST00000344624.3:c.4046G>A	p.Arg1349Lys	p.R1349K	ENST00000344624		1349	aGa/aAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180513	56180513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	39	321	0	ENST00000399503.3:c.3842C>A	p.Ser1281Tyr	p.S1281Y	ENST00000399503	NM_005921.1	1281	tCt/tAt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517497	176517497	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	129	935	0	ENST00000292408.4:c.198G>C	p.Trp66Cys	p.W66C	ENST00000292408	NM_213647.1	66	tgG/tgC																																																																															
TAP1	6890	MSKCC	GRCh37	6	32820834	32820834	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	98	812	0	ENST00000354258.4:c.760G>T	p.Val254Leu	p.V254L	ENST00000354258	NM_000593.5	254	Gtg/Ttg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141570582	141570582	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	118	535	0	ENST00000220592.5:c.546C>G	p.Phe182Leu	p.F182L	ENST00000220592	NM_012154.3	182	ttC/ttG																																																																															
JAK2	3717	MSKCC	GRCh37	9	5055739	5055739	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	153	453	0	ENST00000381652.3:c.1007C>G	p.Ser336Ter	p.S336*	ENST00000381652	NM_004972.3	336	tCa/tGa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0034668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	20	524	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056349	27056349	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	23	304	0	ENST00000324856.7:c.1345C>T	p.Gln449Ter	p.Q449*	ENST00000324856	NM_006015.4	449	Cag/Tag																																																																															
CCND1	595	MSKCC	GRCh37	11	69456221	69456221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	63	540	0	ENST00000227507.2:c.140G>A	p.Cys47Tyr	p.C47Y	ENST00000227507	NM_053056.2	47	tGt/tAt																																																																															
CCND1	595	MSKCC	GRCh37	11	69456211	69456213	+	missense_variant	Missense_Mutation	ONP	TAC	TAC	CAG			P-0034668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	58	552	0	ENST00000227507.2:c.130_132delinsCAG	p.Tyr44Gln	p.Y44Q	ENST00000227507	NM_053056.2	44	TAC/CAG																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98240362	98240362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	164	432	0	ENST00000331920.6:c.1322G>A	p.Arg441His	p.R441H	ENST00000331920	NM_000264.3	441	cGc/cAc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874199	155874199	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	133	641	0	ENST00000368323.3:c.332T>A	p.Val111Asp	p.V111D	ENST00000368323	NM_006912.5	111	gTt/gAt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162749901	162749901	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0034676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	73	449	0	ENST00000367921.3:c.2434-1G>C		p.X812_splice	ENST00000367921	NM_006182.2	812																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	TCC			P-0034706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	114	413	2	ENST00000275493.2:c.2237_2251delinsTCC	p.Glu746_Thr751delinsValPro	p.E746_T751delinsVP	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gTCCca																																																																															
MSH3	4437	MSKCC	GRCh37	5	80168933	80168933	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0034706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	97	804	1	ENST00000265081.6:c.3131-2A>T		p.X1044_splice	ENST00000265081	NM_002439.4	1044																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0034711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	554	477	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0034711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	540	689	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0034711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	141	291	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164610	47164610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	144	380	0	ENST00000409792.3:c.1516A>G	p.Arg506Gly	p.R506G	ENST00000409792	NM_014159.6	506	Aga/Gga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532645	187532645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	109	487	0	ENST00000441802.2:c.9748C>T	p.Leu3250Phe	p.L3250F	ENST00000441802	NM_005245.3	3250	Ctt/Ttt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86682702	86682703	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	101	234	0	ENST00000274376.6:c.2912dup	p.Leu971PhefsTer3	p.L971Ffs*3	ENST00000274376	NM_002890.2	969	-/T																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	109	591	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579493	7579493	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	211	840	0	ENST00000269305.4:c.194del	p.Arg65LysfsTer58	p.R65Kfs*58	ENST00000269305	NM_001126112.2	65	aGa/aa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860125	151860125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	44	570	0	ENST00000262189.6:c.10537C>T	p.Pro3513Ser	p.P3513S	ENST00000262189	NM_170606.2	3513	Cct/Tct																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205644	38205644	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	158	986	0	ENST00000317025.8:c.46A>G	p.Ile16Val	p.I16V	ENST00000317025	NM_023034.1	16	Att/Gtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0034729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1231	112	732	1	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	40	315	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs760640852		P-0034729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	141	396	0	ENST00000304494.5:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000304494	NM_000077.4	74	Gac/Tac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390917	89390917	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	51	328	0	ENST00000336596.2:c.983C>A	p.Ser328Ter	p.S328*	ENST00000336596	NM_005233.5	328	tCa/tAa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174441	11174441	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	66	661	0	ENST00000361445.4:c.7234G>T	p.Asp2412Tyr	p.D2412Y	ENST00000361445	NM_004958.3	2412	Gac/Tac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247230	153247230	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	55	382	0	ENST00000281708.4:c.1572G>C	p.Lys524Asn	p.K524N	ENST00000281708	NM_033632.3	524	aaG/aaC																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275858	38275858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	74	506	0	ENST00000425967.3:c.1411G>A	p.Gly471Arg	p.G471R	ENST00000425967	NM_001174067.1	471	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0034752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1237	74	984	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
INSR	3643	MSKCC	GRCh37	19	7168066	7168066	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	46	596	0	ENST00000302850.5:c.1523C>G	p.Ser508Cys	p.S508C	ENST00000302850	NM_000208.2	508	tCt/tGt																																																																															
MYC	4609	MSKCC	GRCh37	8	128750897	128750897	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	123	667	1	ENST00000377970.2:c.434T>A	p.Ile145Asn	p.I145N	ENST00000377970	NM_002467.4	145	aTc/aAc																																																																															
MET	4233	MSKCC	GRCh37	7	116411895	116411919	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTTTAAGATCTGGGCAGTGAATTA	GTTTTAAGATCTGGGCAGTGAATTA	-			P-0034752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1312	334	1039	0	ENST00000397752.3:c.2888-5_2907del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0034753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	150	395	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0034753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	529	578	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	88	267	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781894		P-0034753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	200	519	1	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909231		P-0034753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	175	326	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	176	506	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046611	30046611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	252	663	0	ENST00000331968.5:c.2572C>T	p.Arg858Cys	p.R858C	ENST00000331968	NM_002742.2	858	Cgc/Tgc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609672	117609672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	144	447	1	ENST00000368508.3:c.7027G>A	p.Gly2343Arg	p.G2343R	ENST00000368508	NM_002944.2	2343	Gga/Aga																																																																															
NF1	4763	MSKCC	GRCh37	17	29560052	29560052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	133	316	0	ENST00000358273.4:c.3529G>A	p.Ala1177Thr	p.A1177T	ENST00000358273	NM_001042492.2	1177	Gct/Act																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	147	469	0	ENST00000346208.3:c.1275dupA	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843495	3843495	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	139	667	3	ENST00000262367.5:c.1108C>T	p.Arg370Ter	p.R370*	ENST00000262367	NM_004380.2	370	Cga/Tga																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156713	20156713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	147	668	0	ENST00000379607.5:c.44G>T	p.Gly15Val	p.G15V	ENST00000379607	NM_001412.3	15	gGt/gTt																																																																															
ATRX	546	MSKCC	GRCh37	X	76814153	76814153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	45	303	0	ENST00000373344.5:c.6491G>A	p.Arg2164Lys	p.R2164K	ENST00000373344	NM_000489.3	2164	aGg/aAg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47143020	47143020	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	50	474	0	ENST00000409792.3:c.4943T>A	p.Val1648Asp	p.V1648D	ENST00000409792	NM_014159.6	1648	gTt/gAt																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815419	32815419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	65	612	0	ENST00000354258.4:c.1954G>A	p.Gly652Arg	p.G652R	ENST00000354258	NM_000593.5	652	Gga/Aga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0034783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	66	383	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692816	89692817	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	167	292	0	ENST00000371953.3:c.301dup	p.Ile101AsnfsTer6	p.I101Nfs*6	ENST00000371953	NM_000314.4	100	-/A																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247361	71247361	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	258	522	0	ENST00000318789.4:c.172C>T	p.Gln58Ter	p.Q58*	ENST00000318789	NM_032682.5	58	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0034785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	229	428	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55223550	55223550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	293	542	1	ENST00000275493.2:c.917C>T	p.Ser306Leu	p.S306L	ENST00000275493	NM_005228.3	306	tCg/tTg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273793	18273793	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	152	466	0	ENST00000222254.8:c.1126A>G	p.Lys376Glu	p.K376E	ENST00000222254	NM_005027.3	376	Aag/Gag																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643663	38643663	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	145	661	0	ENST00000299084.4:c.1133A>G	p.His378Arg	p.H378R	ENST00000299084	NM_152594.2	378	cAt/cGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087944	27087944	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0034811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	217	649	0	ENST00000324856.7:c.2231C>G	p.Ser744Ter	p.S744*	ENST00000324856	NM_006015.4	744	tCa/tGa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	179	581	0	ENST00000206249.3:c.1607T>G	p.Leu536Arg	p.L536R	ENST00000206249	NM_000125.3	536	cTc/cGc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68942745	68942745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2030	127	415	1	ENST00000288368.4:c.557G>A	p.Arg186Gln	p.R186Q	ENST00000288368	NM_024870.2	186	cGg/cAg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65335072	65335072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	34	563	0	ENST00000342505.4:c.569T>C	p.Leu190Pro	p.L190P	ENST00000342505	NM_002227.2	190	cTa/cCa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339208	65339208	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0034811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	138	393	0	ENST00000342505.4:c.330-2A>T		p.X110_splice	ENST00000342505	NM_002227.2	110																																																																																
PDCD1	5133	MSKCC	GRCh37	2	242795102	242795102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	42	788	0	ENST00000334409.5:c.107C>T	p.Thr36Ile	p.T36I	ENST00000334409	NM_005018.2	36	aCc/aTc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562505	176562505	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	242	682	0	ENST00000439151.2:c.401A>C	p.Asn134Thr	p.N134T	ENST00000439151	NM_022455.4	134	aAc/aCc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117674320	117674320	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	34	492	0	ENST00000368508.3:c.4154T>C	p.Leu1385Pro	p.L1385P	ENST00000368508	NM_002944.2	1385	cTt/cCt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	327	557	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808870	1808870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	755	649	5	ENST00000260795.2:c.2302G>A	p.Glu768Lys	p.E768K	ENST00000260795		768	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	408	685	3	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562298	21562298	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	266	707	1	ENST00000382592.4:c.1621G>T	p.Glu541Ter	p.E541*	ENST00000382592	NM_014572.2	541	Gag/Tag																																																																															
TET1	80312	MSKCC	GRCh37	10	70412308	70412308	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	185	310	1	ENST00000373644.4:c.4418G>T	p.Gly1473Val	p.G1473V	ENST00000373644	NM_030625.2	1473	gGt/gTt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123681	46123682	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGAG			P-0034818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	324	306	0	ENST00000334344.6:c.64_67dup	p.Leu23ArgfsTer14	p.L23Rfs*14	ENST00000334344	NM_152641.2	21	gac/gaCGAGc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562031	21562031	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	285	907	0	ENST00000382592.4:c.1888G>C	p.Glu630Gln	p.E630Q	ENST00000382592	NM_014572.2	630	Gaa/Caa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434426	110434426	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	405	644	0	ENST00000375856.3:c.3975C>G	p.Phe1325Leu	p.F1325L	ENST00000375856	NM_003749.2	1325	ttC/ttG																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792651	33792651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	88	118	0	ENST00000498907.2:c.670C>T	p.His224Tyr	p.H224Y	ENST00000498907	NM_004364.3	224	Cac/Tac																																																																															
TERT	7015	MSKCC	GRCh37	5	1253896	1253896	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	72	537	0	ENST00000310581.5:c.3346G>C	p.Glu1116Gln	p.E1116Q	ENST00000310581	NM_198253.2	1116	Gag/Cag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123687	46123687	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	334	291	0	ENST00000334344.6:c.68T>G	p.Leu23Arg	p.L23R	ENST00000334344	NM_152641.2	23	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	58	706	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0034819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	27	263	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115723	8115723	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0034852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	135	296	0	ENST00000346208.3:c.1069A>T	p.Lys357Ter	p.K357*	ENST00000346208		357	Aag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112276	115112277	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGTCCGTCTGCACCGTGA			P-0034852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	27	55	0	ENST00000257566.3:c.1445_1463dup	p.Ala489HisfsTer209	p.A489Hfs*209	ENST00000257566	NM_016569.3	488	gcg/gcTCACGGTGCAGACGGACGCg																																																																															
CBFB	865	MSKCC	GRCh37	16	67100633	67100633	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0034852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	293	581	1	ENST00000412916.2:c.331A>T	p.Lys111Ter	p.K111*	ENST00000412916		111	Aaa/Taa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786494	135786494	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	109	427	0	ENST00000298552.3:c.1036C>G	p.Leu346Val	p.L346V	ENST00000298552	NM_001162426.1	346	Ctt/Gtt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	104	435	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0034854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	136	464	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502382	186502384	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0034854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	52	426	0	ENST00000323963.5:c.109_111del	p.Asp37del	p.D37del	ENST00000323963		35	ttTGAt/ttt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399128	139399128	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372830543		P-0034854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	149	500	0	ENST00000277541.6:c.5015G>A	p.Arg1672His	p.R1672H	ENST00000277541	NM_017617.3	1672	cGc/cAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118683	115118683	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0034854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	126	497	0	ENST00000257566.3:c.657+1G>T		p.X219_splice	ENST00000257566	NM_016569.3	219																																																																																
SOX9	6662	MSKCC	GRCh37	17	70119060	70119060	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	250	382	0	ENST00000245479.2:c.632C>A	p.Ser211Ter	p.S211*	ENST00000245479	NM_000346.3	211	tCg/tAg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933243	49933243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	183	664	1	ENST00000296474.3:c.2867G>A	p.Ser956Asn	p.S956N	ENST00000296474	NM_002447.2	956	aGc/aAc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0034875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	105	294	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175548	112175548	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	91	295	0	ENST00000257430.4:c.4260delC	p.Ser1421ValfsTer52	p.S1421Vfs*52	ENST00000257430	NM_000038.5	1419	agC/ag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119096	70119096	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	108	295	0	ENST00000245479.2:c.672del	p.Gly225AlafsTer28	p.G225Afs*28	ENST00000245479	NM_000346.3	223	tCc/tc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570101	95570101	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	209	492	0	ENST00000343455.3:c.3632T>C	p.Val1211Ala	p.V1211A	ENST00000343455	NM_177438.2	1211	gTg/gCg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965388	68965388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	245	665	0	ENST00000288368.4:c.1000G>A	p.Ala334Thr	p.A334T	ENST00000288368	NM_024870.2	334	Gca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	459	590	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0034877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	738	798	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0034877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	196	399	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	133	371	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175360	112175360	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	190	314	2	ENST00000257430.4:c.4069G>T	p.Gly1357Ter	p.G1357*	ENST00000257430	NM_000038.5	1357	Gga/Tga																																																																															
ALK	238	MSKCC	GRCh37	2	30143044	30143044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	414	895	4	ENST00000389048.3:c.482C>T	p.Ala161Val	p.A161V	ENST00000389048	NM_004304.4	161	gCg/gTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40757428	40757428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	1207	754	0	ENST00000373198.4:c.2870C>T	p.Pro957Leu	p.P957L	ENST00000373198	NM_133170.3	957	cCg/cTg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533755	63533760	+	inframe_deletion	In_Frame_Del	DEL	GGGAGC	GGGAGC	-			P-0034877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	583	631	5	ENST00000307078.5:c.1394_1399del	p.Arg465_Ser466del	p.R465_S466del	ENST00000307078	NM_004655.3	465	cGCTCCCcg/ccg																																																																															
BARD1	580	MSKCC	GRCh37	2	215661836	215661836	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	260	403	0	ENST00000260947.4:c.164A>T	p.Asn55Ile	p.N55I	ENST00000260947	NM_000465.2	55	aAc/aTc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162397	47162397	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	488	499	1	ENST00000409792.3:c.3729A>G	p.Ile1243Met	p.I1243M	ENST00000409792	NM_014159.6	1243	atA/atG																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515173	31515173	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	416	1036	0	ENST00000344624.3:c.1212A>T	p.Glu404Asp	p.E404D	ENST00000344624		404	gaA/gaT																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372215	55372215	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1056128511		P-0034877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	212	292	0	ENST00000297316.4:c.905C>T	p.Ser302Leu	p.S302L	ENST00000297316	NM_022454.3	302	tCg/tTg																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518418	69518418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	22	60	0	ENST00000294312.3:c.227C>T	p.Ala76Val	p.A76V	ENST00000294312	NM_005117.2	76	gCg/gTg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44920662	44920662	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0034890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	17	191	0	ENST00000377967.4:c.1423del	p.Gln475SerfsTer13	p.Q475Sfs*13	ENST00000377967	NM_021140.2	475	Cag/ag																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50484150	50484150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	57	593	0	ENST00000394963.4:c.1000C>T	p.Arg334Trp	p.R334W	ENST00000394963	NM_003076.4	334	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0034944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	84	270	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061274	38061274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	370	654	0	ENST00000250448.2:c.715G>A	p.Gly239Ser	p.G239S	ENST00000250448	NM_004496.3	239	Ggc/Agc																																																																															
NF1	4763	MSKCC	GRCh37	17	29663659	29663659	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	94	267	0	ENST00000358273.4:c.6154G>T	p.Gly2052Ter	p.G2052*	ENST00000358273	NM_001042492.2	2052	Gga/Tga																																																																															
FANCA	2175	MSKCC	GRCh37	16	89813027	89813027	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	122	642	0	ENST00000389301.3:c.3478C>T	p.Gln1160Ter	p.Q1160*	ENST00000389301	NM_000135.2	1160	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630803	187630803	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	287	614	0	ENST00000441802.2:c.179G>C	p.Gly60Ala	p.G60A	ENST00000441802	NM_005245.3	60	gGt/gCt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32172163	32172163	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	117	653	1	ENST00000375023.3:c.2869G>T	p.Ala957Ser	p.A957S	ENST00000375023	NM_004557.3	957	Gcc/Tcc																																																																															
XIAP	331	MSKCC	GRCh37	X	123026582	123026582	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0034944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	56	205	0	ENST00000355640.3:c.1058T>G	p.Val353Gly	p.V353G	ENST00000355640		353	gTa/gGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577126	+	protein_altering_variant	In_Frame_Del	DEL	CGCACCT	CGCACCT	A			P-0034944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	229	698	0	ENST00000269305.4:c.812_818delinsT	p.Glu271_Arg273delinsVal	p.E271_R273delinsV	ENST00000269305	NM_001126112.2	271	gAGGTGCGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	350	711	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600447	10600447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	354	696	0	ENST00000171111.5:c.1408C>T	p.Arg470Cys	p.R470C	ENST00000171111	NM_203500.1	470	Cgt/Tgt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93969137	93969137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	40	390	0	ENST00000369303.4:c.1859C>T	p.Ala620Val	p.A620V	ENST00000369303	NM_004440.3	620	gCt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106508	27106508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	125	635	0	ENST00000324856.7:c.6119G>A	p.Gly2040Glu	p.G2040E	ENST00000324856	NM_006015.4	2040	gGg/gAg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65311261	65311261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	139	512	0	ENST00000342505.4:c.2050G>T	p.Asp684Tyr	p.D684Y	ENST00000342505	NM_002227.2	684	Gat/Tat																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166577	118166577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	160	320	0	ENST00000369448.3:c.1087G>T	p.Val363Phe	p.V363F	ENST00000369448	NM_017709.3	363	Gtc/Ttc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431079	49431079	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	144	683	0	ENST00000301067.7:c.10060G>T	p.Gly3354Trp	p.G3354W	ENST00000301067	NM_003482.3	3354	Ggg/Tgg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89871793	89871793	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	247	508	0	ENST00000389301.3:c.604G>C	p.Asp202His	p.D202H	ENST00000389301	NM_000135.2	202	Gac/Cac																																																																															
SOS1	6654	MSKCC	GRCh37	2	39222348	39222348	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	235	665	0	ENST00000402219.2:c.3262A>T	p.Thr1088Ser	p.T1088S	ENST00000402219	NM_005633.3	1088	Aca/Tca																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212495267	212495267	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	70	335	0	ENST00000342788.4:c.1999G>C	p.Val667Leu	p.V667L	ENST00000342788	NM_005235.2	667	Gtg/Ctg																																																																															
MITF	4286	MSKCC	GRCh37	3	70005682	70005682	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	44	144	0	ENST00000352241.4:c.1013+1G>T		p.X338_splice	ENST00000352241	NM_198159.2	338																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89462330	89462330	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	76	296	0	ENST00000336596.2:c.1802C>A	p.Thr601Lys	p.T601K	ENST00000336596	NM_005233.5	601	aCa/aAa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55151604	55151604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	111	496	0	ENST00000257290.5:c.2390G>A	p.Ser797Asn	p.S797N	ENST00000257290	NM_006206.4	797	aGc/aAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562942	176562942	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	39	279	0	ENST00000439151.2:c.838G>C	p.Asp280His	p.D280H	ENST00000439151	NM_022455.4	280	Gat/Cat																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239759	53239759	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	270	504	0	ENST00000375401.3:c.1584-1G>T		p.X528_splice	ENST00000375401	NM_004187.3	528																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	79	296	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	117	331	1	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88659550	88659550	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	128	443	0	ENST00000372037.3:c.334-1G>T		p.X112_splice	ENST00000372037	NM_004329.2	112																																																																																
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	98	408	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	80	287	2	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	148	559	2	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																															
IRF4	3662	MSKCC	GRCh37	6	401528	401528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	129	347	1	ENST00000380956.4:c.850G>A	p.Ala284Thr	p.A284T	ENST00000380956	NM_001195286.1	284	Gcc/Acc																																																																															
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	145	500	2	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870985	12870986	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	84	341	0	ENST00000228872.4:c.215dupG	p.Lys73GlnfsTer52	p.K73Qfs*52	ENST00000228872	NM_004064.3	71	gag/gaGg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	134	470	14	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
CUL3	8452	MSKCC	GRCh37	2	225365174	225365174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	149	410	0	ENST00000264414.4:c.1516C>T	p.Arg506Trp	p.R506W	ENST00000264414	NM_003590.4	506	Cgg/Tgg																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652118	36652118	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	205	665	0	ENST00000244741.5:c.243del	p.Arg83GlyfsTer65	p.R83Gfs*65	ENST00000244741	NM_000389.4	80	acG/ac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391799	139391799	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	137	632	2	ENST00000277541.6:c.6392delG	p.Gly2131AlafsTer117	p.G2131Afs*117	ENST00000277541	NM_017617.3	2131	gGc/gc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771831816		P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	94	454	0	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345769	152345769	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	52	308	0	ENST00000359321.1:c.801del	p.Lys267AsnfsTer30	p.K267Nfs*30	ENST00000359321	NM_005431.1	267	aaA/aa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81972439	81972439	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	159	489	2	ENST00000359376.3:c.3232C>T	p.Arg1078Ter	p.R1078*	ENST00000359376	NM_002661.3	1078	Cga/Tga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302390	15302390	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146578114		P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	316	925	2	ENST00000263388.2:c.881C>T	p.Thr294Met	p.T294M	ENST00000263388	NM_000435.2	294	aCg/aTg																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811605	102811605	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	338	611	0	ENST00000307046.8:c.579delA	p.Gly194GlufsTer8	p.G194Efs*8	ENST00000307046	NM_001111285.1	193	aaA/aa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37053348	37053348	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	112	380	1	ENST00000231790.2:c.588delA	p.Lys196AsnfsTer6	p.K196Nfs*6	ENST00000231790	NM_000249.3	195	Aaa/aa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50920466	50920466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	355	643	1	ENST00000440232.2:c.3158G>A	p.Arg1053His	p.R1053H	ENST00000440232	NM_002691.3	1053	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087513	27087513	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	248	796	0	ENST00000324856.7:c.2090del	p.Pro697ArgfsTer45	p.P697Rfs*45	ENST00000324856	NM_006015.4	696	tCc/tc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	101	408	1	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	101	790	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	129	385	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200877	67200877	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	197	596	1	ENST00000312629.5:c.870delC	p.Tyr291ThrfsTer14	p.Y291Tfs*14	ENST00000312629	NM_003952.2	289	Ccc/cc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323362	31323363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	201	494	1	ENST00000412585.2:c.626dupC	p.Thr211AspfsTer10	p.T211Dfs*10	ENST00000412585	NM_005514.6	209	cca/ccCa																																																																															
NF1	4763	MSKCC	GRCh37	17	29701087	29701087	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	118	394	0	ENST00000358273.4:c.8434C>T	p.Arg2812Ter	p.R2812*	ENST00000358273	NM_001042492.2	2812	Cga/Tga																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646980	23646981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1060502767		P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	184	610	0	ENST00000261584.4:c.886dup	p.Met296AsnfsTer7	p.M296Nfs*7	ENST00000261584	NM_024675.3	296	atg/aAtg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302611	15302611	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	231	818	0	ENST00000263388.2:c.747delG	p.Thr250HisfsTer122	p.T250Hfs*122	ENST00000263388	NM_000435.2	249	ggG/gg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231215	98231215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	256	761	0	ENST00000331920.6:c.2068G>A	p.Val690Ile	p.V690I	ENST00000331920	NM_000264.3	690	Gtc/Atc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111167	193111167	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	57	281	1	ENST00000367435.3:c.700C>T	p.Arg234Ter	p.R234*	ENST00000367435	NM_024529.4	234	Cga/Tga																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988426	36988426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	85	240	0	ENST00000354822.5:c.227C>T	p.Ala76Val	p.A76V	ENST00000354822	NM_001079668.2	76	gCg/gTg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138127	64138127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	201	492	0	ENST00000334205.4:c.2050C>T	p.Pro684Ser	p.P684S	ENST00000334205	NM_003942.2	684	Ccg/Tcg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224532	36224532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759167832		P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1240	316	987	0	ENST00000222270.7:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000222270	NM_014727.1	2332	Cgt/Tgt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046022	180046022	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	43	90	0	ENST00000261937.6:c.2849C>T	p.Ala950Val	p.A950V	ENST00000261937	NM_182925.4	950	gCg/gTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944732	71944732	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	117	865	0	ENST00000298229.2:c.2160del	p.Val721CysfsTer37	p.V721Cfs*37	ENST00000298229	NM_001567.3	719	tCc/tc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99478609	99478609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	188	566	0	ENST00000268035.6:c.3251G>A	p.Arg1084Gln	p.R1084Q	ENST00000268035	NM_000875.3	1084	cGg/cAg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78435687	78435687	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	72	272	0	ENST00000370768.2:c.133del	p.Ile45LeufsTer9	p.I45Lfs*9	ENST00000370768	NM_003902.3	45	Att/tt																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599165	28599165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	274	906	0	ENST00000253063.3:c.611G>A	p.Cys204Tyr	p.C204Y	ENST00000253063	NM_031459.4	204	tGc/tAc																																																																															
MPL	4352	MSKCC	GRCh37	1	43805659	43805659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	168	472	0	ENST00000372470.3:c.715G>A	p.Gly239Arg	p.G239R	ENST00000372470	NM_005373.2	239	Gga/Aga																																																																															
LMO1	4004	MSKCC	GRCh37	11	8248636	8248636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	133	635	1	ENST00000335790.3:c.251C>T	p.Thr84Ile	p.T84I	ENST00000335790	NM_002315.2	84	aCc/aTc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94926640	94926640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	91	318	0	ENST00000536441.1:c.125C>T	p.Ala42Val	p.A42V	ENST00000536441	NM_144665.3	42	gCc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448379	49448379	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	189	651	0	ENST00000301067.7:c.332C>A	p.Pro111His	p.P111H	ENST00000301067	NM_003482.3	111	cCc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133225618	133225618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	43	632	1	ENST00000320574.5:c.4046C>T	p.Ala1349Val	p.A1349V	ENST00000320574	NM_006231.2	1349	gCg/gTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28896487	28896487	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149241190		P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	86	329	0	ENST00000282397.4:c.2963G>A	p.Gly988Asp	p.G988D	ENST00000282397	NM_002019.4	988	gGt/gAt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30194817	30194817	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	46	596	1	ENST00000331968.5:c.328T>A	p.Ser110Thr	p.S110T	ENST00000331968	NM_002742.2	110	Tct/Act																																																																															
MGA	23269	MSKCC	GRCh37	15	41989044	41989044	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	148	525	1	ENST00000219905.7:c.1840del	p.Arg614GlufsTer7	p.R614Efs*7	ENST00000219905	NM_001164273.1	612	ggA/gg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23632770	23632770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	45	467	1	ENST00000261584.4:c.3026del	p.Pro1009LeufsTer6	p.P1009Lfs*6	ENST00000261584	NM_024675.3	1009	cCt/ct																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	75	407	0	ENST00000268489.5:c.10214_10215dup	p.Gly3406ProfsTer80	p.G3406Pfs*80	ENST00000268489	NM_006885.3	3405	-/CC																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438293	56438293	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	148	744	0	ENST00000407977.2:c.700C>T	p.Gln234Ter	p.Q234*	ENST00000407977		234	Cag/Tag																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78921062	78921062	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	188	665	0	ENST00000306801.3:c.3176A>G	p.Tyr1059Cys	p.Y1059C	ENST00000306801	NM_020761.2	1059	tAt/tGt																																																																															
CCNE1	898	MSKCC	GRCh37	19	30311686	30311686	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	128	428	0	ENST00000262643.3:c.540A>C	p.Gln180His	p.Q180H	ENST00000262643	NM_001238.2	180	caA/caC																																																																															
AKT2	208	MSKCC	GRCh37	19	40741863	40741863	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	165	677	0	ENST00000392038.2:c.1109del	p.Pro370ArgfsTer205	p.P370Rfs*205	ENST00000392038	NM_001626.4	370	cCg/cg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25991710	25991710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	203	458	0	ENST00000435504.4:c.532C>A	p.Gln178Lys	p.Q178K	ENST00000435504		178	Cag/Aag																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30309744	30309744	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	46	650	0	ENST00000307677.4:c.278C>G	p.Ala93Gly	p.A93G	ENST00000307677	NM_138578.1	93	gCa/gGa																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928730	49928730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	121	919	1	ENST00000296474.3:c.3544G>A	p.Val1182Met	p.V1182M	ENST00000296474	NM_002447.2	1182	Gtg/Atg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430478	181430478	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	40	514	0	ENST00000325404.1:c.330C>A	p.Tyr110Ter	p.Y110*	ENST00000325404	NM_003106.3	110	taC/taA																																																																															
NSD1	64324	MSKCC	GRCh37	5	176719015	176719015	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1321310131		P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	80	306	0	ENST00000439151.2:c.6319C>T	p.Arg2107Cys	p.R2107C	ENST00000439151	NM_022455.4	2107	Cgc/Tgc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13949265	13949265	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	54	196	0	ENST00000405192.2:c.863A>G	p.Lys288Arg	p.K288R	ENST00000405192	NM_001163147.1	288	aAa/aGa																																																																															
MET	4233	MSKCC	GRCh37	7	116339164	116339164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	118	345	0	ENST00000397752.3:c.26C>T	p.Pro9Leu	p.P9L	ENST00000397752	NM_000245.2	9	cCt/cTt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69129910	69129910	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	45	303	0	ENST00000288368.4:c.4664C>A	p.Pro1555Gln	p.P1555Q	ENST00000288368	NM_024870.2	1555	cCa/cAa																																																																															
NBN	4683	MSKCC	GRCh37	8	90983427	90983427	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	72	211	0	ENST00000265433.3:c.676del	p.Thr226HisfsTer5	p.T226Hfs*5	ENST00000265433	NM_002485.4	226	Aca/ca																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5549536	5549536	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	235	740	0	ENST00000397747.3:c.563G>C	p.Arg188Thr	p.R188T	ENST00000397747	NM_025239.3	188	aGa/aCa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8633347	8633347	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	150	512	1	ENST00000356435.5:c.322A>G	p.Ser108Gly	p.S108G	ENST00000356435		108	Agt/Ggt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231272	98231272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	294	792	0	ENST00000331920.6:c.2011C>A	p.His671Asn	p.H671N	ENST00000331920	NM_000264.3	671	Cac/Aac																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0037479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	53	718	0	ENST00000397752.3:c.3028G>T	p.Asp1010Tyr	p.D1010Y	ENST00000397752	NM_000245.2	1010	Gat/Tat																																																																															
MTOR	2475	MSKCC	GRCh37	1	11181324	11181324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	94	526	0	ENST00000361445.4:c.6912G>T	p.Trp2304Cys	p.W2304C	ENST00000361445	NM_004958.3	2304	tgG/tgT																																																																															
ATM	472	MSKCC	GRCh37	11	108170461	108170461	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	54	306	0	ENST00000278616.4:c.5026G>T	p.Gly1676Ter	p.G1676*	ENST00000278616	NM_000051.3	1676	Gga/Tga																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18544137	18544137	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	60	291	0	ENST00000266497.5:c.1954G>T	p.Glu652Ter	p.E652*	ENST00000266497		652	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	75	379	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865032	57865032	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	136	828	0	ENST00000228682.2:c.2509C>A	p.Pro837Thr	p.P837T	ENST00000228682	NM_005269.2	837	Ccc/Acc																																																																															
POLE	5426	MSKCC	GRCh37	12	133210953	133210953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	57	516	0	ENST00000320574.5:c.5823G>C	p.Gln1941His	p.Q1941H	ENST00000320574	NM_006231.2	1941	caG/caC																																																																															
MGA	23269	MSKCC	GRCh37	15	42042100	42042100	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	45	529	0	ENST00000219905.7:c.6295C>T	p.Gln2099Ter	p.Q2099*	ENST00000219905	NM_001164273.1	2099	Caa/Taa																																																																															
MGA	23269	MSKCC	GRCh37	15	42054049	42054049	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	27	249	0	ENST00000219905.7:c.7510+1G>T		p.X2504_splice	ENST00000219905	NM_001164273.1	2504																																																																																
AXIN1	8312	MSKCC	GRCh37	16	339479	339479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	103	798	0	ENST00000262320.3:c.2423G>T	p.Gly808Val	p.G808V	ENST00000262320	NM_003502.3	808	gGc/gTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991913	72991913	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	146	509	0	ENST00000268489.5:c.2132C>G	p.Pro711Arg	p.P711R	ENST00000268489	NM_006885.3	711	cCc/cGc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243932	41243932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	154	583	0	ENST00000357654.3:c.3616G>A	p.Ala1206Thr	p.A1206T	ENST00000357654	NM_007294.3	1206	Gcc/Acc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965864	25965864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	93	618	0	ENST00000435504.4:c.3342G>T	p.Arg1114Ser	p.R1114S	ENST00000435504		1114	agG/agT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32183020	32183020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	88	651	0	ENST00000375023.3:c.2004C>A	p.His668Gln	p.H668Q	ENST00000375023	NM_004557.3	668	caC/caA																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797253	32797253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	147	847	1	ENST00000374899.4:c.1856G>T	p.Arg619Leu	p.R619L	ENST00000374899	NM_018833.2	619	cGg/cTg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907160	101907160	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	30	308	0	ENST00000374994.4:c.1120G>T	p.Gly374Ter	p.G374*	ENST00000374994	NM_004612.2	374	Gga/Tga																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249906	110249906	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	109	443	0	ENST00000374672.4:c.769G>T	p.Gly257Cys	p.G257C	ENST00000374672	NM_004235.4	257	Ggc/Tgc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841229	15841229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	82	167	0	ENST00000307771.7:c.1313G>A	p.Gly438Asp	p.G438D	ENST00000307771	NM_005089.3	438	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	81	495	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46740279	46740279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150315374		P-0039715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	111	514	0	ENST00000371975.4:c.1759C>T	p.Arg587Trp	p.R587W	ENST00000371975	NM_003579.3	587	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0039715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	70	393	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578195	7578197	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0039715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	181	660	0	ENST00000269305.4:c.652_654del	p.Val218del	p.V218del	ENST00000269305	NM_001126112.2	218	GTG/-																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106539	27106539	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	159	711	0	ENST00000324856.7:c.6150G>A	p.Trp2050Ter	p.W2050*	ENST00000324856	NM_006015.4	2050	tgG/tgA																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944471	40944471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	248	636	0	ENST00000373198.4:c.2031G>T	p.Gln677His	p.Q677H	ENST00000373198	NM_133170.3	677	caG/caT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0039716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	432	550	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576857	7576857	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	252	566	0	ENST00000269305.4:c.989T>G	p.Leu330Arg	p.L330R	ENST00000269305	NM_001126112.2	330	cTt/cGt																																																																															
HGF	3082	MSKCC	GRCh37	7	81358946	81358946	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1246	77	619	1	ENST00000222390.5:c.1015A>T	p.Met339Leu	p.M339L	ENST00000222390	NM_000601.4	339	Atg/Ttg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119978	70119979	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCGGCA			P-0000631-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			216	55	216	0	ENST00000245479.2:c.986_987insACCCGGC	p.Ser330ProfsTer250	p.S330Pfs*250	ENST00000245479	NM_000346.3	327	acc/acCCCGGCAc																																																																															
CIC	23152	MSKCC	GRCh37	19	42791853	42791853	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000631-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			560	209	950	0	ENST00000575354.2:c.739del	p.Gln247ArgfsTer10	p.Q247Rfs*10	ENST00000575354	NM_015125.3	247	Cag/ag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100379	157100379	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000631-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			201	34	143	0	ENST00000346085.5:c.1316A>G	p.Glu439Gly	p.E439G	ENST00000346085	NM_020732.3	439	gAg/gGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0022504-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			993	73	900	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022504-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			795	53	630	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDK8	1024	MSKCC	GRCh37	13	26974650	26974650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022504-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	62	843	0	ENST00000381527.3:c.994G>A	p.Asp332Asn	p.D332N	ENST00000381527	NM_001260.1	332	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0038752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	82	416	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1176	166	1014	0	ENST00000269305.4:c.400T>C	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	Ttt/Ctt																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46602960	46602960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	113	794	0	ENST00000263734.3:c.1018G>T	p.Val340Phe	p.V340F	ENST00000263734	NM_001430.4	340	Gtc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	13	653	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245994	46245994	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	16	347	0	ENST00000334344.6:c.4088A>T	p.Asp1363Val	p.D1363V	ENST00000334344	NM_152641.2	1363	gAt/gTt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112007	115112007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	77	668	0	ENST00000257566.3:c.1733T>C	p.Leu578Pro	p.L578P	ENST00000257566	NM_016569.3	578	cTg/cCg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678589	88678589	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	11	388	0	ENST00000360948.2:c.947G>C	p.Arg316Pro	p.R316P	ENST00000360948	NM_001012338.2	316	cGc/cCc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645219	67645219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	21	673	0	ENST00000264010.4:c.484G>A	p.Glu162Lys	p.E162K	ENST00000264010	NM_006565.3	162	Gaa/Aaa																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170013741	170013741	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	11	377	0	ENST00000295797.4:c.1460T>G	p.Val487Gly	p.V487G	ENST00000295797	NM_002740.5	487	gTa/gGa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157520007	157520007	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	18	600	0	ENST00000346085.5:c.4076G>C	p.Gly1359Ala	p.G1359A	ENST00000346085	NM_020732.3	1359	gGa/gCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0039746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	431	51	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0039746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	114	39	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962846	2962846	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	78	153	0	ENST00000396946.4:c.2062C>T	p.Arg688Ter	p.R688*	ENST00000396946	NM_032415.4	688	Cga/Tga																																																																															
FLT3	2322	MSKCC	GRCh37	13	28601353	28601353	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	95	47	0	ENST00000241453.7:c.2079C>G	p.Tyr693Ter	p.Y693*	ENST00000241453	NM_004119.2	693	taC/taG																																																																															
CDK6	1021	MSKCC	GRCh37	7	92462475	92462475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	71	115	0	ENST00000265734.4:c.163C>T	p.Pro55Ser	p.P55S	ENST00000265734	NM_001259.6	55	Ccg/Tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0039771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	138	856	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509828	106509828	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	116	649	0	ENST00000359195.3:c.1822T>C	p.Tyr608His	p.Y608H	ENST00000359195	NM_002649.2	608	Tac/Cac																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250155	110250156	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATAG			P-0039771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	47	797	0	ENST00000374672.4:c.516_519dup	p.Gly174LeufsTer84	p.G174Lfs*84	ENST00000374672	NM_004235.4	173	-/CTAT																																																																															
ATM	472	MSKCC	GRCh37	11	108202655	108202655	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	35	400	1	ENST00000278616.4:c.7679T>A	p.Ile2560Lys	p.I2560K	ENST00000278616	NM_000051.3	2560	aTa/aAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099397	27099397	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	90	684	0	ENST00000324856.7:c.3634C>T	p.Gln1212Ter	p.Q1212*	ENST00000324856	NM_006015.4	1212	Cag/Tag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65309866	65309866	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	173	520	0	ENST00000342505.4:c.2284G>C	p.Glu762Gln	p.E762Q	ENST00000342505	NM_002227.2	762	Gag/Cag																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429779	78429779	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	71	419	0	ENST00000370768.2:c.1009G>C	p.Glu337Gln	p.E337Q	ENST00000370768	NM_003902.3	337	Gaa/Caa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243708880	243708880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	60	441	0	ENST00000263826.5:c.1183G>A	p.Asp395Asn	p.D395N	ENST00000263826	NM_005465.4	395	Gat/Aat																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61197641	61197641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	177	568	0	ENST00000301761.2:c.23C>T	p.Ser8Leu	p.S8L	ENST00000301761	NM_017841.2	8	tCg/tTg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67196471	67196471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	155	689	0	ENST00000312629.5:c.97G>A	p.Glu33Lys	p.E33K	ENST00000312629	NM_003952.2	33	Gag/Aag																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200506	67200506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	167	791	0	ENST00000312629.5:c.700G>A	p.Glu234Lys	p.E234K	ENST00000312629	NM_003952.2	234	Gag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108172408	108172408	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	74	473	0	ENST00000278616.4:c.5211G>C	p.Leu1737Phe	p.L1737F	ENST00000278616	NM_000051.3	1737	ttG/ttC																																																																															
ATM	472	MSKCC	GRCh37	11	108202721	108202721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	54	387	0	ENST00000278616.4:c.7745G>A	p.Arg2582Lys	p.R2582K	ENST00000278616	NM_000051.3	2582	aGa/aAa																																																																															
ATM	472	MSKCC	GRCh37	11	108236120	108236120	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	137	626	0	ENST00000278616.4:c.9056G>C	p.Gly3019Ala	p.G3019A	ENST00000278616	NM_000051.3	3019	gGa/gCa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	432863	432863	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	130	586	0	ENST00000399788.2:c.2053C>G	p.Leu685Val	p.L685V	ENST00000399788	NM_001042603.1	685	Ctc/Gtc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	441043	441043	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	114	520	0	ENST00000399788.2:c.1715C>G	p.Ser572Cys	p.S572C	ENST00000399788	NM_001042603.1	572	tCt/tGt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245376	46245376	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	88	563	0	ENST00000334344.6:c.3470C>G	p.Ser1157Ter	p.S1157*	ENST00000334344	NM_152641.2	1157	tCa/tGa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49415831	49415831	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	119	451	0	ENST00000301067.7:c.16516G>C	p.Glu5506Gln	p.E5506Q	ENST00000301067	NM_003482.3	5506	Gag/Cag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49415882	49415882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	120	514	0	ENST00000301067.7:c.16465G>A	p.Asp5489Asn	p.D5489N	ENST00000301067	NM_003482.3	5489	Gac/Aac																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111855952	111855952	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	253	576	0	ENST00000341259.2:c.3G>A	p.Met1?	p.M1?	ENST00000341259	NM_005475.2	1	atG/atA																																																																															
RAB35	11021	MSKCC	GRCh37	12	120536716	120536716	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	188	841	0	ENST00000229340.5:c.376G>C	p.Glu126Gln	p.E126Q	ENST00000229340	NM_006861.6	126	Gag/Cag																																																																															
POLE	5426	MSKCC	GRCh37	12	133252685	133252685	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149029910		P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	29	564	0	ENST00000320574.5:c.1015G>A	p.Asp339Asn	p.D339N	ENST00000320574	NM_006231.2	339	Gat/Aat																																																																															
FLT3	2322	MSKCC	GRCh37	13	28597546	28597546	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	82	704	0	ENST00000241453.7:c.2359G>C	p.Asp787His	p.D787H	ENST00000241453	NM_004119.2	787	Gat/Cat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912304	32912304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	45	516	0	ENST00000380152.3:c.3812C>T	p.Ser1271Leu	p.S1271L	ENST00000380152		1271	tCa/tTa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32915220	32915220	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	77	708	0	ENST00000380152.3:c.6728C>G	p.Ser2243Cys	p.S2243C	ENST00000380152		2243	tCt/tGt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046637	30046637	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	150	565	0	ENST00000331968.5:c.2546G>C	p.Arg849Pro	p.R849P	ENST00000331968	NM_002742.2	849	cGa/cCa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061115	38061115	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	24	83	0	ENST00000250448.2:c.874G>T	p.Glu292Ter	p.E292*	ENST00000250448	NM_004496.3	292	Gag/Tag																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422130	81422130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	177	605	0	ENST00000298171.2:c.106G>T	p.Asp36Tyr	p.D36Y	ENST00000298171	NM_000369.2	36	Gac/Tac																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610315	81610315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	84	551	0	ENST00000298171.2:c.1913C>T	p.Ala638Val	p.A638V	ENST00000298171	NM_000369.2	638	gCc/gTc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90634818	90634818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	161	699	0	ENST00000330062.3:c.174G>A	p.Met58Ile	p.M58I	ENST00000330062	NM_002168.2	58	atG/atA																																																																															
IDH2	3418	MSKCC	GRCh37	15	90634838	90634838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	161	689	0	ENST00000330062.3:c.154G>A	p.Glu52Lys	p.E52K	ENST00000330062	NM_002168.2	52	Gag/Aag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639265	3639265	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	260	903	0	ENST00000294008.3:c.4374G>C	p.Met1458Ile	p.M1458I	ENST00000294008	NM_032444.2	1458	atG/atC																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346169	89346169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	84	310	0	ENST00000301030.4:c.6781G>A	p.Glu2261Lys	p.E2261K	ENST00000301030	NM_001256183.1	2261	Gaa/Aaa																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216889	7216889	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	118	595	0	ENST00000380728.2:c.632G>A	p.Arg211Lys	p.R211K	ENST00000380728		211	aGa/aAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578259	7578260	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTCGGATAAGATGCTG			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	125	743	0	ENST00000269305.4:c.574_589dup	p.Val197AlafsTer17	p.V197Afs*17	ENST00000269305	NM_001126112.2	197	gtg/gCAGCATCTTATCCGAGtg																																																																															
NF1	4763	MSKCC	GRCh37	17	29496952	29496952	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	47	405	0	ENST00000358273.4:c.523C>G	p.His175Asp	p.H175D	ENST00000358273	NM_001042492.2	175	Cat/Gat																																																																															
NF1	4763	MSKCC	GRCh37	17	29683977	29683977	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	78	512	0	ENST00000358273.4:c.7739-1G>A		p.X2580_splice	ENST00000358273	NM_001042492.2	2580																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37881588	37881588	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	270	780	0	ENST00000269571.5:c.2658C>G	p.Ile886Met	p.I886M	ENST00000269571		886	atC/atG																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37882913	37882913	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs112493843		P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	153	755	0	ENST00000269571.5:c.2970+1G>A		p.X990_splice	ENST00000269571		990																																																																																
HOXB13	10481	MSKCC	GRCh37	17	46804406	46804406	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	157	513	0	ENST00000290295.7:c.602-1G>T		p.X201_splice	ENST00000290295	NM_006361.5	201																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11118578	11118578	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	94	392	0	ENST00000344626.4:c.2002G>C	p.Glu668Gln	p.E668Q	ENST00000344626	NM_003072.3	668	Gag/Cag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11118653	11118653	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	269	804	0	ENST00000344626.4:c.2077C>G	p.Pro693Ala	p.P693A	ENST00000344626	NM_003072.3	693	Cca/Gca																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912096	50912096	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	281	1006	0	ENST00000440232.2:c.1830C>G	p.Ile610Met	p.I610M	ENST00000440232	NM_002691.3	610	atC/atG																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469041	25469041	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	51	810	0	ENST00000264709.3:c.1417G>T	p.Glu473Ter	p.E473*	ENST00000264709	NM_175629.2	473	Gag/Tag																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026971	48026971	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	69	446	0	ENST00000234420.5:c.1849C>G	p.Leu617Val	p.L617V	ENST00000234420	NM_000179.2	617	Ctt/Gtt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61725920	61725920	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	41	454	0	ENST00000401558.2:c.647C>G	p.Ser216Cys	p.S216C	ENST00000401558	NM_003400.3	216	tCt/tGt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812182	212812182	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	45	329	0	ENST00000342788.4:c.394C>G	p.Gln132Glu	p.Q132E	ENST00000342788	NM_005235.2	132	Caa/Gaa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560998	9560998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	138	461	0	ENST00000353224.5:c.784G>A	p.Asp262Asn	p.D262N	ENST00000353224	NM_177990.2	262	Gat/Aat																																																																															
ASXL1	171023	MSKCC	GRCh37	20	30946621	30946621	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	32	195	0	ENST00000375687.4:c.43G>C	p.Glu15Gln	p.E15Q	ENST00000375687	NM_015338.5	15	Gag/Cag																																																																															
TOP1	7150	MSKCC	GRCh37	20	39751917	39751917	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	132	491	0	ENST00000361337.2:c.2278G>C	p.Asp760His	p.D760H	ENST00000361337	NM_003286.2	760	Gat/Cat																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42860377	42860377	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	292	879	0	ENST00000398585.3:c.500C>G	p.Ser167Cys	p.S167C	ENST00000398585	NM_001135099.1	167	tCt/tGt																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22127167	22127167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	108	493	0	ENST00000215832.6:c.961G>A	p.Asp321Asn	p.D321N	ENST00000215832	NM_002745.4	321	Gac/Aac																																																																															
NF2	4771	MSKCC	GRCh37	22	30051626	30051626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	93	367	0	ENST00000338641.4:c.560G>A	p.Arg187Lys	p.R187K	ENST00000338641	NM_000268.3	187	aGa/aAa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138452271	138452271	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	49	423	0	ENST00000289153.2:c.982G>T	p.Glu328Ter	p.E328*	ENST00000289153	NM_006219.2	328	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	210	601	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185198132	185198132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	140	617	0	ENST00000265026.3:c.2614G>A	p.Glu872Lys	p.E872K	ENST00000265026	NM_004721.4	872	Gag/Aag																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186506980	186506980	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	51	357	0	ENST00000323963.5:c.1146G>C	p.Lys382Asn	p.K382N	ENST00000323963		382	aaG/aaC																																																																															
KDR	3791	MSKCC	GRCh37	4	55987277	55987277	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	52	467	0	ENST00000263923.4:c.148C>G	p.Gln50Glu	p.Q50E	ENST00000263923	NM_002253.2	50	Caa/Gaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280043	66280043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	66	317	0	ENST00000273854.3:c.1646G>A	p.Gly549Asp	p.G549D	ENST00000273854	NM_004439.5	549	gGt/gAt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143043324	143043324	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	61	461	0	ENST00000262992.4:c.2092G>T	p.Glu698Ter	p.E698*	ENST00000262992	NM_001101669.1	698	Gaa/Taa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542590	187542590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	50	565	0	ENST00000441802.2:c.5150G>A	p.Gly1717Glu	p.G1717E	ENST00000441802	NM_005245.3	1717	gGa/gAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56171105	56171105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	16	329	0	ENST00000399503.3:c.1933G>C	p.Asp645His	p.D645H	ENST00000399503	NM_005921.1	645	Gac/Cac																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67590490	67590490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	43	276	0	ENST00000274335.5:c.1552G>A	p.Glu518Lys	p.E518K	ENST00000274335		518	Gag/Aag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645088	86645088	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	60	421	0	ENST00000274376.6:c.1160C>A	p.Ser387Ter	p.S387*	ENST00000274376	NM_002890.2	387	tCa/tAa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176665482	176665482	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	207	507	0	ENST00000439151.2:c.4166C>G	p.Ser1389Cys	p.S1389C	ENST00000439151	NM_022455.4	1389	tCt/tGt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176678749	176678749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	102	446	0	ENST00000439151.2:c.4660G>A	p.Glu1554Lys	p.E1554K	ENST00000439151	NM_022455.4	1554	Gag/Aag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176718993	176718993	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	97	382	0	ENST00000439151.2:c.6297C>A	p.Phe2099Leu	p.F2099L	ENST00000439151	NM_022455.4	2099	ttC/ttA																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032205	26032205	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	86	408	0	ENST00000244661.2:c.84G>C	p.Lys28Asn	p.K28N	ENST00000244661	NM_003537.3	28	aaG/aaC																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680121	30680121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs117708355		P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	159	761	0	ENST00000376406.3:c.1598C>T	p.Ser533Leu	p.S533L	ENST00000376406	NM_014641.2	533	tCa/tTa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169887	32169887	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	231	861	0	ENST00000375023.3:c.3721G>C	p.Asp1241His	p.D1241H	ENST00000375023	NM_004557.3	1241	Gat/Cat																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170164	32170164	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	266	979	0	ENST00000375023.3:c.3444G>C	p.Glu1148Asp	p.E1148D	ENST00000375023	NM_004557.3	1148	gaG/gaC																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287239	33287239	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	156	693	0	ENST00000374542.5:c.1858C>G	p.His620Asp	p.H620D	ENST00000374542	NM_001141970.1	620	Cac/Gac																																																																															
SESN1	27244	MSKCC	GRCh37	6	109322556	109322556	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	105	677	0	ENST00000436639.2:c.481C>T	p.Gln161Ter	p.Q161*	ENST00000436639	NM_014454.2	161	Cag/Tag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129076	152129076	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	214	819	0	ENST00000206249.3:c.29C>G	p.Ser10Cys	p.S10C	ENST00000206249	NM_000125.3	10	tCt/tGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265364	152265364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	30	609	0	ENST00000206249.3:c.817G>A	p.Asp273Asn	p.D273N	ENST00000206249	NM_000125.3	273	Gat/Aat																																																																															
PMS2	5395	MSKCC	GRCh37	7	6048638	6048638	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	217	703	0	ENST00000265849.7:c.13G>C	p.Glu5Gln	p.E5Q	ENST00000265849	NM_000535.5	5	Gag/Cag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879331	151879331	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	115	552	1	ENST00000262189.6:c.5614C>T	p.Gln1872Ter	p.Q1872*	ENST00000262189	NM_170606.2	1872	Cag/Tag																																																																															
MYC	4609	MSKCC	GRCh37	8	128753178	128753178	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	89	361	0	ENST00000377970.2:c.1339G>C	p.Glu447Gln	p.E447Q	ENST00000377970	NM_002467.4	447	Gaa/Caa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5073724	5073724	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	41	354	0	ENST00000381652.3:c.1803G>T	p.Met601Ile	p.M601I	ENST00000381652	NM_004972.3	601	atG/atT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486089	8486089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	117	609	0	ENST00000356435.5:c.2728G>A	p.Glu910Lys	p.E910K	ENST00000356435		910	Gag/Aag																																																																															
TEK	7010	MSKCC	GRCh37	9	27173273	27173273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	182	784	0	ENST00000380036.4:c.814G>A	p.Glu272Lys	p.E272K	ENST00000380036	NM_000459.3	272	Gag/Aag																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128432184	128432184	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	20	426	0	ENST00000265960.3:c.262C>G	p.Gln88Glu	p.Q88E	ENST00000265960	NM_001006617.1	88	Caa/Gaa																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139563050	139563050	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	271	899	0	ENST00000308874.7:c.122C>G	p.Ser41Cys	p.S41C	ENST00000308874		41	tCc/tGc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410441	63410441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	170	810	0	ENST00000330258.3:c.2726C>T	p.Ser909Phe	p.S909F	ENST00000330258	NM_152424.3	909	tCc/tTc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123185066	123185066	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	70	596	0	ENST00000218089.9:c.1113C>G	p.Phe371Leu	p.F371L	ENST00000218089	NM_001042749.1	371	ttC/ttG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0039859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	145	545	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0039859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	12	468	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	298	930	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57470669	57470669	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0039859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	35	290	0	ENST00000371085.3:c.142G>T	p.Ala48Ser	p.A48S	ENST00000371085	NM_000516.4	48	Gct/Tct																																																																															
ROS1	6098	MSKCC	GRCh37	6	117708981	117708981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	31	585	0	ENST00000368508.3:c.1976C>G	p.Pro659Arg	p.P659R	ENST00000368508	NM_002944.2	659	cCc/cGc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435355	18435355	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	155	394	0	ENST00000266497.5:c.340T>G	p.Leu114Val	p.L114V	ENST00000266497		114	Tta/Gta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0039928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	59	822	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0039928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	113	715	3	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0039928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	90	452	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0039928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	133	433	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5211778	5211778	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	130	677	0	ENST00000357368.4:c.5057G>A	p.Arg1686Gln	p.R1686Q	ENST00000357368	NM_002850.3	1686	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0039970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	188	627	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0039970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	36	345	1	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851324	156851324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	94	741	0	ENST00000524377.1:c.2281C>T	p.Arg761Trp	p.R761W	ENST00000524377	NM_002529.3	761	Cgg/Tgg																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872969	136872969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	49	412	0	ENST00000241393.3:c.529G>A	p.Val177Ile	p.V177I	ENST00000241393	NM_003467.2	177	Gtc/Atc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40384105	40384105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	80	439	0	ENST00000293328.3:c.41C>G	p.Ala14Gly	p.A14G	ENST00000293328	NM_012448.3	14	gCc/gGc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158617538	158617538	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	63	529	0	ENST00000263640.3:c.1118A>C	p.Asn373Thr	p.N373T	ENST00000263640	NM_001105.4	373	aAt/aCt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067371	37067371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	29	486	0	ENST00000231790.2:c.1282G>A	p.Asp428Asn	p.D428N	ENST00000231790	NM_000249.3	428	Gat/Aat																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670595	134670595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	79	787	0	ENST00000398015.3:c.506C>A	p.Thr169Asn	p.T169N	ENST00000398015	NM_004441.4	169	aCt/aAt																																																																															
APC	324	MSKCC	GRCh37	5	112175343	112175344	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	30	229	0	ENST00000257430.4:c.4053dup	p.Val1352CysfsTer2	p.V1352Cfs*2	ENST00000257430	NM_000038.5	1351	gct/gcTt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288734	33288734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	36	464	0	ENST00000374542.5:c.818G>A	p.Arg273Gln	p.R273Q	ENST00000374542	NM_001141970.1	273	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0039973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	55	526	1	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
NFE2L2	4780	MSKCC	GRCh37	2	178098965	178098965	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	22	244	0	ENST00000397062.3:c.80A>G	p.Asp27Gly	p.D27G	ENST00000397062	NM_006164.4	27	gAt/gGt																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279522	123279522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	43	694	1	ENST00000358487.5:c.910G>A	p.Asp304Asn	p.D304N	ENST00000358487	NM_000141.4	304	Gac/Aac																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986973	36986973	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	48	497	1	ENST00000354822.5:c.716del	p.Phe239SerfsTer8	p.F239Sfs*8	ENST00000354822	NM_001079668.2	239	tTc/tc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987010	36987010	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	37	537	0	ENST00000354822.5:c.679del	p.Met227Ter	p.M227*	ENST00000354822	NM_001079668.2	227	Atg/tg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0039980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	245	339	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0039980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	28	333	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0039980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	146	749	1	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
INHA	3623	MSKCC	GRCh37	2	220439494	220439494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	114	530	0	ENST00000243786.2:c.347G>A	p.Arg116Gln	p.R116Q	ENST00000243786	NM_002191.3	116	cGg/cAg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986820	36986821	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	35	113	0	ENST00000354822.5:c.868dup	p.Val290GlyfsTer149	p.V290Gfs*149	ENST00000354822	NM_001079668.2	290	gtg/gGtg																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652087	36652087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	130	700	0	ENST00000244741.5:c.209G>A	p.Gly70Asp	p.G70D	ENST00000244741	NM_000389.4	70	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	52	404	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	319	920	0	ENST00000269305.4:c.403delT	p.Cys135AlafsTer35	p.C135Afs*35	ENST00000269305	NM_001126112.2	135	Tgc/gc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974762	21974763	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	72	294	0	ENST00000304494.5:c.64dup	p.Arg22ProfsTer22	p.R22Pfs*22	ENST00000304494	NM_000077.4	22	cgg/cCgg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64128983	64128984	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	73	793	0	ENST00000334205.4:c.618dup	p.Glu207ArgfsTer5	p.E207Rfs*5	ENST00000334205	NM_003942.2	205	gcc/gCcc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	107	668	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573229	64573229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	85	631	1	ENST00000337652.1:c.1078C>T	p.Arg360Trp	p.R360W	ENST00000337652	NM_130803.2	360	Cgg/Tgg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123258036	123258036	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	56	388	0	ENST00000358487.5:c.1645A>G	p.Asn549Asp	p.N549D	ENST00000358487	NM_000141.4	549	Aat/Gat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0039987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	103	478	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	338	946	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	250	630	0	ENST00000269305.4:c.730G>C	p.Gly244Arg	p.G244R	ENST00000269305	NM_001126112.2	244	Ggc/Cgc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69005852	69005852	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	157	349	0	ENST00000288368.4:c.2263C>A	p.Gln755Lys	p.Q755K	ENST00000288368	NM_024870.2	755	Caa/Aaa																																																																															
BRAF	673	MSKCC	GRCh37	7	140481403	140481403	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	165	414	0	ENST00000288602.6:c.1405G>C	p.Gly469Arg	p.G469R	ENST00000288602	NM_004333.4	469	Gga/Cga																																																																															
EZH2	2146	MSKCC	GRCh37	7	148529772	148529772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	134	398	0	ENST00000320356.2:c.317C>T	p.Ser106Leu	p.S106L	ENST00000320356	NM_004456.4	106	tCa/tTa																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797510	45797510	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	335	844	0	ENST00000372115.3:c.967G>T	p.Gly323Ter	p.G323*	ENST00000372115	NM_001048171.1	323	Gga/Tga																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46725723	46725723	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	201	521	0	ENST00000371975.4:c.359T>C	p.Leu120Pro	p.L120P	ENST00000371975	NM_003579.3	120	cTg/cCg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78414921	78414921	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	154	418	0	ENST00000370768.2:c.1845G>A	p.Trp615Ter	p.W615*	ENST00000370768	NM_003902.3	615	tgG/tgA																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206666681	206666681	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	239	761	0	ENST00000367120.3:c.2015C>G	p.Pro672Arg	p.P672R	ENST00000367120	NM_014002.3	672	cCc/cGc																																																																															
FH	2271	MSKCC	GRCh37	1	241667486	241667486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	124	281	0	ENST00000366560.3:c.964G>T	p.Val322Phe	p.V322F	ENST00000366560	NM_000143.3	322	Gtt/Ttt																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944761	31944761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	112	298	0	ENST00000340398.3:c.340G>T	p.Ala114Ser	p.A114S	ENST00000340398	NM_001013699.2	114	Gct/Tct																																																																															
CDK8	1024	MSKCC	GRCh37	13	26975477	26975477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	133	333	0	ENST00000381527.3:c.1103G>T	p.Gly368Val	p.G368V	ENST00000381527	NM_001260.1	368	gGa/gTa																																																																															
RB1	5925	MSKCC	GRCh37	13	48955568	48955568	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	43	275	0	ENST00000267163.4:c.1684G>T	p.Ala562Ser	p.A562S	ENST00000267163	NM_000321.2	562	Gca/Tca																																																																															
NUP93	9688	MSKCC	GRCh37	16	56871574	56871574	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	304	565	0	ENST00000308159.5:c.1954C>G	p.Gln652Glu	p.Q652E	ENST00000308159	NM_014669.4	652	Cag/Gag																																																																															
NF1	4763	MSKCC	GRCh37	17	29508800	29508800	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	91	360	0	ENST00000358273.4:c.727G>T	p.Ala243Ser	p.A243S	ENST00000358273	NM_001042492.2	243	Gct/Tct																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211193	2211193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	378	868	2	ENST00000398665.3:c.1447G>T	p.Ala483Ser	p.A483S	ENST00000398665	NM_032482.2	483	Gcg/Tcg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99170928	99170928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	260	718	0	ENST00000074304.5:c.1557G>T	p.Gln519His	p.Q519H	ENST00000074304	NM_001134224.1	519	caG/caT																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468393	89468394	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	80	218	1	ENST00000336596.2:c.1927_1928delinsAA	p.Pro643Asn	p.P643N	ENST00000336596	NM_005233.5	643	CCt/AAt																																																																															
ATR	545	MSKCC	GRCh37	3	142275285	142275285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	199	558	0	ENST00000350721.4:c.2018G>T	p.Ser673Ile	p.S673I	ENST00000350721	NM_001184.3	673	aGt/aTt																																																																															
TP63	8626	MSKCC	GRCh37	3	189582149	189582149	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	351	511	0	ENST00000264731.3:c.708C>G	p.His236Gln	p.H236Q	ENST00000264731	NM_003722.4	236	caC/caG																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129858	55129858	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	163	470	0	ENST00000257290.5:c.392T>C	p.Leu131Pro	p.L131P	ENST00000257290	NM_006206.4	131	cTa/cCa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55154981	55154981	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	135	529	0	ENST00000257290.5:c.2690C>A	p.Pro897His	p.P897H	ENST00000257290	NM_006206.4	897	cCc/cAc																																																																															
KDR	3791	MSKCC	GRCh37	4	55970810	55970810	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	164	418	0	ENST00000263923.4:c.1987G>T	p.Glu663Ter	p.E663*	ENST00000263923	NM_002253.2	663	Gag/Tag																																																																															
KDR	3791	MSKCC	GRCh37	4	55979595	55979595	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	182	487	0	ENST00000263923.4:c.852G>C	p.Glu284Asp	p.E284D	ENST00000263923	NM_002253.2	284	gaG/gaC																																																																															
SDHA	6389	MSKCC	GRCh37	5	236663	236663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	858	597	0	ENST00000264932.6:c.1381G>A	p.Val461Ile	p.V461I	ENST00000264932	NM_004168.2	461	Gtt/Att																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382159	152382159	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	122	343	0	ENST00000206249.3:c.1269G>T	p.Glu423Asp	p.E423D	ENST00000206249	NM_000125.3	423	gaG/gaT																																																																															
AGO2	27161	MSKCC	GRCh37	8	141559315	141559315	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	120	805	1	ENST00000220592.5:c.1486C>T	p.Gln496Ter	p.Q496*	ENST00000220592	NM_012154.3	496	Cag/Tag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518050	8518050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	139	424	0	ENST00000356435.5:c.1341G>T	p.Gln447His	p.Q447H	ENST00000356435		447	caG/caT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	95	283	3	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	64	326	0				ENST00000310581	NM_198253.2																																																																																	
SMAD3	4088	MSKCC	GRCh37	15	67477080	67477080	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	79	411	0	ENST00000327367.4:c.887T>G	p.Leu296Arg	p.L296R	ENST00000327367	NM_005902.3	296	cTc/cGc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482860	67482860	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	69	419	1	ENST00000327367.4:c.1264T>C	p.Ser422Pro	p.S422P	ENST00000327367	NM_005902.3	422	Tcc/Ccc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902657	50902657	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141319800		P-0039990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	144	728	0	ENST00000440232.2:c.232C>T	p.Arg78Cys	p.R78C	ENST00000440232	NM_002691.3	78	Cgc/Tgc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265608	41266240	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTCTGCTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTA	GCTCTGCTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTA	-			P-0039990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	87	246	0	ENST00000349496.5:c.13+39_240del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
RAD50	10111	MSKCC	GRCh37	5	131939021	131939021	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	36	262	0	ENST00000265335.6:c.2237A>G	p.Glu746Gly	p.E746G	ENST00000265335		746	gAa/gGa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0039044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	64	727	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0039049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	159	767	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	96	467	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112170682	112170682	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	71	487	0	ENST00000257430.4:c.1778G>A	p.Trp593Ter	p.W593*	ENST00000257430	NM_000038.5	593	tGg/tAg																																																																															
SESN1	27244	MSKCC	GRCh37	6	109311924	109311924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	75	660	0	ENST00000436639.2:c.1348G>A	p.Ala450Thr	p.A450T	ENST00000436639	NM_014454.2	450	Gca/Aca																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508616	106508616	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	61	587	0	ENST00000359195.3:c.610T>G	p.Ser204Ala	p.S204A	ENST00000359195	NM_002649.2	204	Tcc/Gcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0039475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	252	380	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120663	115120663	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	463	892	0	ENST00000257566.3:c.343C>T	p.Gln115Ter	p.Q115*	ENST00000257566	NM_016569.3	115	Cag/Tag																																																																															
RAD21	5885	MSKCC	GRCh37	8	117859878	117859878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	63	232	0	ENST00000297338.2:c.1757G>A	p.Arg586Gln	p.R586Q	ENST00000297338	NM_006265.2	586	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112102958	112102958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	154	428	0	ENST00000257430.4:c.293G>T	p.Ser98Ile	p.S98I	ENST00000257430	NM_000038.5	98	aGc/aTc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437684	52437685	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	576	729	0	ENST00000460680.1:c.1476_1477insG	p.Thr493AspfsTer6	p.T493Dfs*6	ENST00000460680	NM_004656.3	492	-/G																																																																															
JUN	3725	MSKCC	GRCh37	1	59248514	59248514	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	303	527	1	ENST00000371222.2:c.229G>T	p.Glu77Ter	p.E77*	ENST00000371222	NM_002228.3	77	Gag/Tag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375690	118375690	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	219	469	0	ENST00000534358.1:c.9083A>T	p.Asn3028Ile	p.N3028I	ENST00000534358	NM_005933.3	3028	aAc/aTc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32944575	32944575	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	301	481	1	ENST00000380152.3:c.8368A>T	p.Thr2790Ser	p.T2790S	ENST00000380152		2790	Acc/Tcc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032280	10032280	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	312	507	1	ENST00000330684.3:c.543G>T	p.Arg181Ser	p.R181S	ENST00000330684	NM_001134407.1	181	agG/agT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs397516435		P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	296	595	0	ENST00000269305.4:c.586C>G	p.Arg196Gly	p.R196G	ENST00000269305	NM_001126112.2	196	Cga/Gga																																																																															
NF1	4763	MSKCC	GRCh37	17	29533379	29533379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	130	188	0	ENST00000358273.4:c.1382G>A	p.Arg461Gln	p.R461Q	ENST00000358273	NM_001042492.2	461	cGa/cAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29576058	29576058	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	305	442	0	ENST00000358273.4:c.4031A>T	p.Glu1344Val	p.E1344V	ENST00000358273	NM_001042492.2	1344	gAa/gTa																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031789	11031789	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	275	636	2	ENST00000327064.4:c.1601A>T	p.Asn534Ile	p.N534I	ENST00000327064	NM_199141.1	534	aAc/aTc																																																																															
CALR	811	MSKCC	GRCh37	19	13051666	13051666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	254	510	0	ENST00000316448.5:c.925G>A	p.Asp309Asn	p.D309N	ENST00000316448	NM_004343.3	309	Gat/Aat																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943499	17943499	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	289	569	1	ENST00000458235.1:c.2509G>C	p.Glu837Gln	p.E837Q	ENST00000458235	NM_000215.3	837	Gag/Cag																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128038071	128038071	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	96	376	0	ENST00000285398.2:c.1479G>A	p.Trp493Ter	p.W493*	ENST00000285398	NM_000122.1	493	tgG/tgA																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499424	89499424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	226	379	0	ENST00000336596.2:c.2594G>C	p.Arg865Thr	p.R865T	ENST00000336596	NM_005233.5	865	aGg/aCg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138431121	138431121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	150	380	0	ENST00000289153.2:c.1328C>G	p.Thr443Arg	p.T443R	ENST00000289153	NM_006219.2	443	aCg/aGg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549435	187549435	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	335	529	0	ENST00000441802.2:c.4683G>T	p.Trp1561Cys	p.W1561C	ENST00000441802	NM_005245.3	1561	tgG/tgT																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670549	30670549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	239	471	0	ENST00000376406.3:c.5971C>T	p.Arg1991Trp	p.R1991W	ENST00000376406	NM_014641.2	1991	Cgg/Tgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170117	32170117	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	287	737	0	ENST00000375023.3:c.3491G>T	p.Ser1164Ile	p.S1164I	ENST00000375023	NM_004557.3	1164	aGc/aTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63409910	63409910	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	116	422	0	ENST00000330258.3:c.3257A>T	p.Gln1086Leu	p.Q1086L	ENST00000330258	NM_152424.3	1086	cAg/cTg																																																																															
AR	367	MSKCC	GRCh37	X	66863151	66863151	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	134	542	0	ENST00000374690.3:c.1670A>G	p.Gln557Arg	p.Q557R	ENST00000374690	NM_000044.3	557	cAg/cGg																																																																															
MED12	9968	MSKCC	GRCh37	X	70344013	70344013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	165	578	0	ENST00000374080.3:c.1749C>A	p.Asp583Glu	p.D583E	ENST00000374080		583	gaC/gaA																																																																															
MED12	9968	MSKCC	GRCh37	X	70348541	70348541	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	166	489	0	ENST00000374080.3:c.3448G>T	p.Ala1150Ser	p.A1150S	ENST00000374080		1150	Gct/Tct																																																																															
ATRX	546	MSKCC	GRCh37	X	76949370	76949370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	81	352	0	ENST00000373344.5:c.427G>T	p.Gly143Trp	p.G143W	ENST00000373344	NM_000489.3	143	Ggg/Tgg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123229223	123229223	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	92	267	0	ENST00000218089.9:c.3707C>A	p.Pro1236Gln	p.P1236Q	ENST00000218089	NM_001042749.1	1236	cCa/cAa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	33	587	0	ENST00000347630.2:c.392G>C	p.Trp131Ser	p.W131S	ENST00000347630	NM_001007230.1	131	tGg/tCg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060691	38060692	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	ACCT			P-0039689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	82	745	0	ENST00000250448.2:c.1297_1298insAGGT	p.Leu433Ter	p.L433*	ENST00000250448	NM_004496.3	433	ttg/tAGGTtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			599	66	514	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0039766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			847	178	1008	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0039766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			468	67	489	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593505	48593505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			399	76	414	0	ENST00000342988.3:c.1256G>A	p.Gly419Glu	p.G419E	ENST00000342988	NM_005359.5	419	gGg/gAg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223356	2223356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			832	132	1072	0	ENST00000326181.6:c.968C>T	p.Ser323Leu	p.S323L	ENST00000326181	NM_032271.2	323	tCg/tTg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204849	128204849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	98	1275	0	ENST00000341105.2:c.592G>A	p.Ala198Thr	p.A198T	ENST00000341105	NM_032638.4	198	Gcg/Acg																																																																															
APC	324	MSKCC	GRCh37	5	112174268	112174269	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGTTTTGC			P-0039766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	56	420	0	ENST00000257430.4:c.2982_2989dup	p.Tyr997PhefsTer11	p.Y997Ffs*11	ENST00000257430	NM_000038.5	993	aag/aAGTTTTGCag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	628	1192	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720711	89720712	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	65	219	0	ENST00000371953.3:c.867dup	p.Val290SerfsTer8	p.V290Sfs*8	ENST00000371953	NM_000314.4	288	gaa/gAaa																																																																															
ATM	472	MSKCC	GRCh37	11	108178642	108178642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	70	282	0	ENST00000278616.4:c.5693G>A	p.Arg1898Gln	p.R1898Q	ENST00000278616	NM_000051.3	1898	cGa/cAa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289871	15289871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	492	1239	1	ENST00000263388.2:c.3683G>A	p.Gly1228Glu	p.G1228E	ENST00000263388	NM_000435.2	1228	gGa/gAa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638917	176638917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	253	782	0	ENST00000439151.2:c.3517C>T	p.Arg1173Cys	p.R1173C	ENST00000439151	NM_022455.4	1173	Cgc/Tgc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163313565	163313565	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	79	371	0	ENST00000271452.3:c.712G>C	p.Glu238Gln	p.E238Q	ENST00000271452	NM_145697.2	238	Gag/Cag																																																																															
PARP1	142	MSKCC	GRCh37	1	226553743	226553743	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	118	396	0	ENST00000366794.5:c.2417G>C	p.Arg806Thr	p.R806T	ENST00000366794	NM_001618.3	806	aGa/aCa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115877	8115877	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	273	716	0	ENST00000346208.3:c.1223C>A	p.Pro408His	p.P408H	ENST00000346208		408	cCc/cAc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851418	63851418	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	217	666	0	ENST00000279873.7:c.2196G>C	p.Leu732Phe	p.L732F	ENST00000279873	NM_032199.2	732	ttG/ttC																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144069	11144069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	331	1060	0	ENST00000344626.4:c.3650C>T	p.Ala1217Val	p.A1217V	ENST00000344626	NM_003072.3	1217	gCa/gTa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960024	134960024	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	103	707	0	ENST00000398015.3:c.2381A>G	p.Glu794Gly	p.E794G	ENST00000398015	NM_004441.4	794	gAg/gGg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664918	138664918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	109	243	0	ENST00000330315.3:c.647C>G	p.Ala216Gly	p.A216G	ENST00000330315	NM_023067.3	216	gCc/gGc																																																																															
APC	324	MSKCC	GRCh37	5	112175401	112175406	+	inframe_deletion	In_Frame_Del	DEL	AAGTCC	AAGTCC	-			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	93	413	0	ENST00000257430.4:c.4111_4116del	p.Ser1371_Pro1372del	p.S1371_P1372del	ENST00000257430	NM_000038.5	1370	aaAAGTCCa/aaa																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910331	29910331	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	620	848	0	ENST00000376809.5:c.1A>G	p.Met1?	p.M1?	ENST00000376809	NM_002116.7	1	Atg/Gtg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671858	30671858	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	483	1077	1	ENST00000376406.3:c.5102A>C	p.Gln1701Pro	p.Q1701P	ENST00000376406	NM_014641.2	1701	cAa/cCa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683622	162683622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	254	696	0	ENST00000366898.1:c.347C>T	p.Ser116Phe	p.S116F	ENST00000366898	NM_004562.2	116	tCt/tTt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729472	41729472	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	553	814	1	ENST00000242208.4:c.1057G>C	p.Glu353Gln	p.E353Q	ENST00000242208	NM_002192.2	353	Gag/Cag																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139815652	139815652	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	235	730	0	ENST00000247668.2:c.1123G>T	p.Ala375Ser	p.A375S	ENST00000247668	NM_021138.3	375	Gcc/Tcc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111496	8111497	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0039809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	39	920	0	ENST00000346208.3:c.982_983delTG	p.Trp328GlufsTer23	p.W328Efs*23	ENST00000346208		328	TGg/g																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729743	162729743	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	94	582	0	ENST00000367921.3:c.829C>G	p.Arg277Gly	p.R277G	ENST00000367921	NM_006182.2	277	Cgc/Ggc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77054889	77054889	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	35	405	0	ENST00000356341.3:c.973C>G	p.Pro325Ala	p.P325A	ENST00000356341	NM_002576.4	325	Cca/Gca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	129	395	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230671	46230671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	101	397	0	ENST00000334344.6:c.920C>T	p.Ala307Val	p.A307V	ENST00000334344	NM_152641.2	307	gCa/gTa																																																																															
RB1	5925	MSKCC	GRCh37	13	49039494	49039494	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	61	441	0	ENST00000267163.4:c.2480del	p.Pro827GlnfsTer6	p.P827Qfs*6	ENST00000267163	NM_000321.2	827	Cca/ca																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40682108	40682108	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	93	547	0	ENST00000249776.8:c.663G>T	p.Leu221Phe	p.L221F	ENST00000249776	NM_033286.3	221	ttG/ttT																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40682117	40682117	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	93	526	0	ENST00000249776.8:c.672G>T	p.Lys224Asn	p.K224N	ENST00000249776	NM_033286.3	224	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	116	721	1	ENST00000269305.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000269305	NM_001126112.2	105	Ggc/Tgc																																																																															
INSR	3643	MSKCC	GRCh37	19	7170723	7170723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	39	784	1	ENST00000302850.5:c.1308G>T	p.Arg436Ser	p.R436S	ENST00000302850	NM_000208.2	436	agG/agT																																																																															
APC	324	MSKCC	GRCh37	5	112176538	112176538	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	32	301	0	ENST00000257430.4:c.5247G>T	p.Gln1749His	p.Q1749H	ENST00000257430	NM_000038.5	1749	caG/caT																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978575	70978575	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	127	563	0	ENST00000276594.2:c.1078C>G	p.Gln360Glu	p.Q360E	ENST00000276594	NM_024504.3	360	Caa/Gaa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742547	145742547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	159	697	0	ENST00000428558.2:c.241C>T	p.His81Tyr	p.H81Y	ENST00000428558	NM_004260.3	81	Cat/Tat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485860	8485860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	36	337	0	ENST00000356435.5:c.2957C>A	p.Pro986Gln	p.P986Q	ENST00000356435		986	cCa/cAa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98248118	98248118	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	72	488	0	ENST00000331920.6:c.433C>T	p.Gln145Ter	p.Q145*	ENST00000331920	NM_000264.3	145	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0039835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	246	349	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	455	965	1	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	301	420	0	ENST00000256078.4:c.436G>C	p.Ala146Pro	p.A146P	ENST00000256078	NM_033360.2	146	Gca/Cca																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411411	63411411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	296	387	0	ENST00000330258.3:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000330258	NM_152424.3	586	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604785	48604785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	92	406	2	ENST00000342988.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000342988	NM_005359.5	536	cTa/cCa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212639	36212639	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1318	152	998	0	ENST00000222270.7:c.2390A>G	p.Lys797Arg	p.K797R	ENST00000222270	NM_014727.1	797	aAg/aGg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702248	47702248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	207	518	1	ENST00000233146.2:c.1844C>T	p.Ala615Val	p.A615V	ENST00000233146	NM_000251.2	615	gCa/gTa																																																																															
BARD1	580	MSKCC	GRCh37	2	215593724	215593724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	49	231	0	ENST00000260947.4:c.2010G>T	p.Lys670Asn	p.K670N	ENST00000260947	NM_000465.2	670	aaG/aaT																																																																															
TP63	8626	MSKCC	GRCh37	3	189582100	189582100	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	278	416	0	ENST00000264731.3:c.659C>G	p.Pro220Arg	p.P220R	ENST00000264731	NM_003722.4	220	cCt/cGt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44894231	44894232	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0039835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	176	199	0	ENST00000377967.4:c.619+2dup		p.X207_splice	ENST00000377967	NM_021140.2	207																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs149680468		P-0039690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	12	399	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																															
NF1	4763	MSKCC	GRCh37	17	29553483	29553483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	99	519	0	ENST00000358273.4:c.2032C>A	p.Pro678Thr	p.P678T	ENST00000358273	NM_001042492.2	678	Ccg/Acg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828303	72828303	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	80	497	0	ENST00000268489.5:c.8278A>G	p.Met2760Val	p.M2760V	ENST00000268489	NM_006885.3	2760	Atg/Gtg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113368	209113368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	35	267	0	ENST00000345146.2:c.139G>A	p.Glu47Lys	p.E47K	ENST00000345146	NM_005896.2	47	Gag/Aag																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265016	46265016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	41	490	0	ENST00000371998.3:c.1886C>T	p.Ser629Phe	p.S629F	ENST00000371998		629	tCt/tTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162474	47162474	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	55	430	0	ENST00000409792.3:c.3652C>G	p.Gln1218Glu	p.Q1218E	ENST00000409792	NM_014159.6	1218	Caa/Gaa																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519422	137519422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	23	299	0	ENST00000367739.4:c.1216G>A	p.Asp406Asn	p.D406N	ENST00000367739	NM_000416.2	406	Gat/Aat																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38172230	38172230	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	70	399	0	ENST00000317025.8:c.2177A>T	p.His726Leu	p.H726L	ENST00000317025	NM_023034.1	726	cAc/cTc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141582964	141582964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	95	699	0	ENST00000220592.5:c.283G>A	p.Asp95Asn	p.D95N	ENST00000220592	NM_012154.3	95	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579417	7579426	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGGGGGCT	GGAGGGGGCT	-			P-0039690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	63	605	0	ENST00000269305.4:c.261_270del	p.Ala88GlyfsTer32	p.A88Gfs*32	ENST00000269305	NM_001126112.2	87	ccAGCCCCCTCC/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0039695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	531	546	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	154	420	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175344	112175344	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	237	277	0	ENST00000257430.4:c.4053del	p.Val1352LeufsTer63	p.V1352Lfs*63	ENST00000257430	NM_000038.5	1351	gcT/gc																																																																															
APC	324	MSKCC	GRCh37	5	112175985	112175985	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	110	259	0	ENST00000257430.4:c.4694del	p.Asp1565ValfsTer11	p.D1565Vfs*11	ENST00000257430	NM_000038.5	1565	gAt/gt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111499	8111500	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	104	813	0	ENST00000346208.3:c.987dup	p.Arg330GlufsTer22	p.R330Efs*22	ENST00000346208		329	agg/aGgg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082317	16082317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	9	1185	1	ENST00000281043.3:c.131C>A	p.Pro44His	p.P44H	ENST00000281043	NM_005378.4	44	cCc/cAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	67	442	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	37	446	0				ENST00000310581	NM_198253.2																																																																																	
JAK3	3718	MSKCC	GRCh37	19	17937619	17937619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1096	62	941	0	ENST00000458235.1:c.3308G>T	p.Arg1103Leu	p.R1103L	ENST00000458235	NM_000215.3	1103	cGg/cTg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163832	152163832	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	52	571	0	ENST00000206249.3:c.553T>A	p.Cys185Ser	p.C185S	ENST00000206249	NM_000125.3	185	Tgt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0039550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	106	574	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023090	27023090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	22	99	0	ENST00000324856.7:c.196C>A	p.Pro66Thr	p.P66T	ENST00000324856	NM_006015.4	66	Ccg/Acg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176722065	176722065	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	52	445	0	ENST00000439151.2:c.7696A>G	p.Thr2566Ala	p.T2566A	ENST00000439151	NM_022455.4	2566	Acc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0039553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	189	552	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026078	48026078	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs188252826		P-0039553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	60	364	0	ENST00000234420.5:c.956C>T	p.Thr319Met	p.T319M	ENST00000234420	NM_000179.2	319	aCg/aTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41513197	41513197	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	69	372	0	ENST00000263253.7:c.101G>C	p.Gly34Ala	p.G34A	ENST00000263253	NM_001429.3	34	gGc/gCc																																																																															
APC	324	MSKCC	GRCh37	5	112128212	112128213	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAACA			P-0039553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	41	306	0	ENST00000257430.4:c.716_720dup	p.Glu241GlnfsTer54	p.E241Qfs*54	ENST00000257430	NM_000038.5	239	gca/gCAACAca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0039557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	80	330	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0039557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	87	343	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	141	304	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577571	7577571	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	161	447	0	ENST00000269305.4:c.710T>A	p.Met237Lys	p.M237K	ENST00000269305	NM_001126112.2	237	aTg/aAg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851995	63851995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	96	448	1	ENST00000279873.7:c.2773G>A	p.Ala925Thr	p.A925T	ENST00000279873	NM_032199.2	925	Gct/Act																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280666	41280666	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1157	202	566	0	ENST00000349496.5:c.2179G>C	p.Asp727His	p.D727H	ENST00000349496	NM_001904.3	727	Gat/Cat																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45795022	45795022	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	312	618	1	ENST00000372115.3:c.1564C>G	p.His522Asp	p.H522D	ENST00000372115	NM_001048171.1	522	Cac/Gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577557	7577557	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	402	558	3	ENST00000269305.4:c.724T>A	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	Tgc/Agc																																																																															
RAD52	5893	MSKCC	GRCh37	12	1040433	1040433	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	438	610	0	ENST00000358495.3:c.139C>G	p.Leu47Val	p.L47V	ENST00000358495	NM_134424.2	47	Ctg/Gtg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186501425	186501425	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	93	282	0	ENST00000323963.5:c.26A>G	p.Asn9Ser	p.N9S	ENST00000323963		9	aAc/aGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151875002	151875012	+	frameshift_variant	Frame_Shift_Del	DEL	TGGAGAAACTC	TGGAGAAACTC	ATCTTCTTA			P-0039562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	87	226	1	ENST00000262189.6:c.7526_7536delinsTAAGAAGAT	p.Gly2509ValfsTer15	p.G2509Vfs*15	ENST00000262189	NM_170606.2	2509	gGAGTTTCTCCA/gTAAGAAGAT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0039565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	56	379	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0039566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	147	384	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
TET2	54790	MSKCC	GRCh37	4	106197347	106197347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	79	398	0	ENST00000380013.4:c.5680C>T	p.Pro1894Ser	p.P1894S	ENST00000380013	NM_001127208.2	1894	Ccc/Tcc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0039676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	168	592	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7574007	7574011	+	frameshift_variant	Frame_Shift_Del	DEL	CATCT	CATCT	-			P-0039676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	247	733	0	ENST00000269305.4:c.1016_1020del	p.Glu339ValfsTer6	p.E339Vfs*6	ENST00000269305	NM_001126112.2	339	gAGATG/g																																																																															
ALK	238	MSKCC	GRCh37	2	29416562	29416562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	69	558	0	ENST00000389048.3:c.4391G>A	p.Arg1464Gln	p.R1464Q	ENST00000389048	NM_004304.4	1464	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	434	388	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
EP300	2033	MSKCC	GRCh37	22	41547874	41547874	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	123	453	0	ENST00000263253.7:c.2855C>G	p.Ser952Ter	p.S952*	ENST00000263253	NM_001429.3	952	tCa/tGa																																																																															
SRC	6714	MSKCC	GRCh37	20	36024580	36024580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	193	678	0	ENST00000358208.4:c.569C>T	p.Ser190Leu	p.S190L	ENST00000358208		190	tCa/tTa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374298	138374298	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	143	580	0	ENST00000289153.2:c.3146T>G	p.Leu1049Arg	p.L1049R	ENST00000289153	NM_006219.2	1049	cTc/cGc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056617	26056617	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	60	273	0	ENST00000343677.2:c.40C>G	p.Pro14Ala	p.P14A	ENST00000343677	NM_005319.3	14	Cct/Gct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216664	36216664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	161	661	4	ENST00000222270.7:c.3830C>T	p.Pro1277Leu	p.P1277L	ENST00000222270	NM_014727.1	1277	cCg/cTg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28586412	28586412	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	132	471	0	ENST00000253063.3:c.54C>G	p.Phe18Leu	p.F18L	ENST00000253063	NM_031459.4	18	ttC/ttG																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156834168	156834168	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	185	701	0	ENST00000524377.1:c.235C>G	p.Leu79Val	p.L79V	ENST00000524377	NM_002529.3	79	Ctg/Gtg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552603	18552603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	125	327	0	ENST00000266497.5:c.2014G>A	p.Glu672Lys	p.E672K	ENST00000266497		672	Gaa/Aaa																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217824	7217824	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	180	536	0	ENST00000380728.2:c.187G>C	p.Glu63Gln	p.E63Q	ENST00000380728		63	Gag/Cag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246215	41246215	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	125	433	0	ENST00000357654.3:c.1333G>C	p.Glu445Gln	p.E445Q	ENST00000357654	NM_007294.3	445	Gaa/Caa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41247890	41247890	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	115	454	0	ENST00000357654.3:c.643G>T	p.Glu215Ter	p.E215*	ENST00000357654	NM_007294.3	215	Gaa/Taa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39250158	39250158	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	172	591	0	ENST00000402219.2:c.1411T>C	p.Cys471Arg	p.C471R	ENST00000402219	NM_005633.3	471	Tgt/Cgt																																																																															
TOP1	7150	MSKCC	GRCh37	20	39690058	39690058	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	56	207	0	ENST00000361337.2:c.83A>G	p.His28Arg	p.H28R	ENST00000361337	NM_003286.2	28	cAc/cGc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39746907	39746907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	111	344	0	ENST00000361337.2:c.1921G>A	p.Glu641Lys	p.E641K	ENST00000361337	NM_003286.2	641	Gag/Aag																																																																															
EP300	2033	MSKCC	GRCh37	22	41551011	41551011	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	97	380	0	ENST00000263253.7:c.3155A>C	p.Glu1052Ala	p.E1052A	ENST00000263253	NM_001429.3	1052	gAa/gCa																																																																															
EP300	2033	MSKCC	GRCh37	22	41551118	41551118	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	123	377	0	ENST00000263253.7:c.3261+1G>A		p.X1087_splice	ENST00000263253	NM_001429.3	1087																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178927388	178927388	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	93	261	0	ENST00000263967.3:c.1151A>G	p.Asn384Ser	p.N384S	ENST00000263967	NM_006218.2	384	aAt/aGt																																																																															
KDR	3791	MSKCC	GRCh37	4	55961036	55961036	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	129	598	0	ENST00000263923.4:c.2904T>G	p.Ser968Arg	p.S968R	ENST00000263923	NM_002253.2	968	agT/agG																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38967461	38967461	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	113	345	0	ENST00000357387.3:c.1129C>G	p.Leu377Val	p.L377V	ENST00000357387	NM_152756.3	377	Ctt/Gtt																																																																															
MSH3	4437	MSKCC	GRCh37	5	80171652	80171652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	110	446	0	ENST00000265081.6:c.3385G>A	p.Glu1129Lys	p.E1129K	ENST00000265081	NM_002439.4	1129	Gaa/Aaa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149505081	149505081	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	132	609	0	ENST00000261799.4:c.1734G>C	p.Glu578Asp	p.E578D	ENST00000261799	NM_002609.3	578	gaG/gaC																																																																															
LATS1	9113	MSKCC	GRCh37	6	150016339	150016339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	114	371	0	ENST00000253339.5:c.367C>T	p.Leu123Phe	p.L123F	ENST00000253339		123	Ctt/Ttt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527871	157527871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	116	413	0	ENST00000346085.5:c.5596G>A	p.Glu1866Lys	p.E1866K	ENST00000346085	NM_020732.3	1866	Gaa/Aaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151927394	151927394	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	18	49	0	ENST00000262189.6:c.2782G>C	p.Asp928His	p.D928H	ENST00000262189	NM_170606.2	928	Gat/Cat																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98218592	98218592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	139	484	0	ENST00000331920.6:c.3272G>T	p.Gly1091Val	p.G1091V	ENST00000331920	NM_000264.3	1091	gGc/gTc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248148	110248148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	180	553	0	ENST00000374672.4:c.1324G>A	p.Glu442Lys	p.E442K	ENST00000374672	NM_004235.4	442	Gaa/Aaa																																																																															
MED12	9968	MSKCC	GRCh37	X	70340908	70340908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	116	645	0	ENST00000374080.3:c.641G>A	p.Gly214Asp	p.G214D	ENST00000374080		214	gGc/gAc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123156514	123156514	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	80	259	0	ENST00000218089.9:c.37C>G	p.Leu13Val	p.L13V	ENST00000218089	NM_001042749.1	13	Cta/Gta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0039681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	294	614	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870969	12870970	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TCTG			P-0039681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	109	371	0	ENST00000228872.4:c.196_197insTCTG	p.Asn66IlefsTer2	p.N66Ifs*2	ENST00000228872	NM_004064.3	66	aat/aTCTGat																																																																															
CD276	80381	MSKCC	GRCh37	15	73996813	73996813	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	81	339	0	ENST00000318443.5:c.1369G>A	p.Gly457Arg	p.G457R	ENST00000318443	NM_001024736.1	457	Ggg/Agg																																																																															
APC	324	MSKCC	GRCh37	5	112173779	112173779	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	12	307	0	ENST00000257430.4:c.2488G>C	p.Val830Leu	p.V830L	ENST00000257430	NM_000038.5	830	Gtg/Ctg																																																																															
APC	324	MSKCC	GRCh37	5	112175189	112175204	+	frameshift_variant	Frame_Shift_Del	DEL	AATACCCTGCAAATAG	AATACCCTGCAAATAG	-			P-0039681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	12	179	0	ENST00000257430.4:c.3898_3913del	p.Asn1300GlnfsTer3	p.N1300Qfs*3	ENST00000257430	NM_000038.5	1300	AATACCCTGCAAATAGca/ca																																																																															
APC	324	MSKCC	GRCh37	5	112173804	112173806	+	frameshift_variant	Frame_Shift_Del	DEL	GAG	GAG	A			P-0039681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	14	303	0	ENST00000257430.4:c.2513_2515delinsA	p.Arg838LysfsTer5	p.R838Kfs*5	ENST00000257430	NM_000038.5	838	aGAGga/aAga																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856002	111856002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	55	533	0	ENST00000341259.2:c.53C>T	p.Ser18Phe	p.S18F	ENST00000341259	NM_005475.2	18	tCc/tTc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112497	115112497	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	194	714	0	ENST00000257566.3:c.1243C>A	p.His415Asn	p.H415N	ENST00000257566	NM_016569.3	415	Cac/Aac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023851	27023871	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCCAGGACGGGGGCGCCGG	GCCCCAGGACGGGGGCGCCGG	A			P-0039705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	110	268	0	ENST00000324856.7:c.957_977delinsA	p.Pro320GlnfsTer73	p.P320Qfs*73	ENST00000324856	NM_006015.4	319	ggGCCCCAGGACGGGGGCGCCGGc/ggAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0039785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	559	897	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821602	+	inframe_deletion	In_Frame_Del	DEL	GCCGCCGCC	GCCGCCGCC	-			P-0039785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	62	132	0	ENST00000268489.5:c.10573_10581delGGCGGCGGC	p.Gly3525_Gly3527del	p.G3525_G3527del	ENST00000268489	NM_006885.3	3525	GGCGGCGGC/-																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602322	10602322	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	573	848	0	ENST00000171111.5:c.1256G>T	p.Gly419Val	p.G419V	ENST00000171111	NM_203500.1	419	gGg/gTg																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194706	29194706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	185	803	0	ENST00000240100.2:c.1022C>T	p.Ala341Val	p.A341V	ENST00000240100	NM_001394.6	341	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431079	49431079	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	191	615	0	ENST00000301067.7:c.10060G>T	p.Gly3354Trp	p.G3354W	ENST00000301067	NM_003482.3	3354	Ggg/Tgg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175916356	175916356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	182	296	1	ENST00000367669.3:c.2153C>T	p.Ala718Val	p.A718V	ENST00000367669	NM_022457.5	718	gCt/gTt																																																																															
BLM	641	MSKCC	GRCh37	15	91312699	91312699	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	111	307	0	ENST00000355112.3:c.2438G>C	p.Arg813Thr	p.R813T	ENST00000355112	NM_000057.2	813	aGa/aCa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207142	1207243	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCAAGATCCTCAAGAAGAAGAAGTTGCGAAGGATCCCCAACGGGGAGGCCAACGTGAAGAAGTAAGTATGGCTTGCTGGGGTCGGGGCCGGGCCGGGCCAGT	TCAAGATCCTCAAGAAGAAGAAGTTGCGAAGGATCCCCAACGGGGAGGCCAACGTGAAGAAGTAAGTATGGCTTGCTGGGGTCGGGGCCGGGCCGGGCCAGT	-			P-0039785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	425	842	0	ENST00000326873.7:c.230_290+41del		p.X77_splice	ENST00000326873	NM_000455.4	77																																																																																
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	166	487	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129428	64129428	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61736650		P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	271	657	0	ENST00000334205.4:c.860C>T	p.Ala287Val	p.A287V	ENST00000334205	NM_003942.2	287	gCg/gTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041046	29041046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	47	262	0	ENST00000282397.4:c.382A>G	p.Ile128Val	p.I128V	ENST00000282397	NM_002019.4	128	Att/Gtt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86628366	86628366	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	72	164	0	ENST00000274376.6:c.739del	p.Ser247LeufsTer6	p.S247Lfs*6	ENST00000274376	NM_002890.2	245	cgT/cg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023603	27023603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	43	515	0	ENST00000324856.7:c.709G>A	p.Gly237Ser	p.G237S	ENST00000324856	NM_006015.4	237	Ggc/Agc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123239375	123239375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	20	302	0	ENST00000358487.5:c.2462C>A	p.Thr821Lys	p.T821K	ENST00000358487	NM_000141.4	821	aCa/aAa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129428	64129429	+	missense_variant	Missense_Mutation	DNP	CG	CG	TT			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	271	659	1	ENST00000334205.4:c.860_861delinsTT	p.Ala287Val	p.A287V	ENST00000334205	NM_003942.2	287	gCG/gTT																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245973	46245973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142127790		P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	86	232	1	ENST00000334344.6:c.4067C>T	p.Pro1356Leu	p.P1356L	ENST00000334344	NM_152641.2	1356	cCg/cTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974745	15974745	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	32	282	0	ENST00000268712.3:c.4130T>A	p.Ile1377Lys	p.I1377K	ENST00000268712	NM_006311.3	1377	aTa/aAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29687505	29687505	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	92	269	0	ENST00000358273.4:c.8161C>T	p.Gln2721Ter	p.Q2721*	ENST00000358273	NM_001042492.2	2721	Caa/Taa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687382	37687382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	28	425	0	ENST00000447079.4:c.4286C>T	p.Ser1429Phe	p.S1429F	ENST00000447079	NM_015083.1	1429	tCt/tTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602551	10602551	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	184	607	0	ENST00000171111.5:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000171111	NM_203500.1	343	Gag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628335	187628335	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	175	491	0	ENST00000441802.2:c.2647C>G	p.Leu883Val	p.L883V	ENST00000441802	NM_005245.3	883	Ctg/Gtg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32806006	32806006	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	121	486	1	ENST00000374899.4:c.5G>T	p.Arg2Leu	p.R2L	ENST00000374899	NM_018833.2	2	cGg/cTg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148516729	148516729	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	149	278	0	ENST00000320356.2:c.958C>G	p.Leu320Val	p.L320V	ENST00000320356	NM_004456.4	320	Cta/Gta																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	65	316	1	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	102	323	0	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	147	222	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	98	295	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	43	242	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	39	147	1	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	177	308	2	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	11	223	1	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	43	146	1	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	79	300	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097200	11097205	+	inframe_deletion	In_Frame_Del	DEL	GGCCCT	GGCCCT	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	54	294	1	ENST00000344626.4:c.708_713del	p.Gly243_Pro244del	p.G243_P244del	ENST00000344626	NM_003072.3	231	GGCCCT/-																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777898	3777898	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	130	402	0	ENST00000262367.5:c.7150del	p.His2384ThrfsTer12	p.H2384Tfs*12	ENST00000262367	NM_004380.2	2384	Cac/ac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	8	387	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287469	46287469	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	126	332	0	ENST00000334344.6:c.5333del	p.Asn1778IlefsTer13	p.N1778Ifs*13	ENST00000334344	NM_152641.2	1776	ttA/tt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222449	53222451	+	inframe_deletion	In_Frame_Del	DEL	CCG	CCG	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	84	354	2	ENST00000375401.3:c.4381_4383del	p.Arg1461del	p.R1461del	ENST00000375401	NM_004187.3	1461	CGG/-																																																																															
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	76	336	4	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528825	157528825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	86	268	1	ENST00000346085.5:c.6554del	p.Pro2185ArgfsTer8	p.P2185Rfs*8	ENST00000346085	NM_020732.3	2184	Ccc/cc																																																																															
KDR	3791	MSKCC	GRCh37	4	55979551	55979551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	79	326	0	ENST00000263923.4:c.896G>A	p.Arg299Gln	p.R299Q	ENST00000263923	NM_002253.2	299	cGg/cAg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	78	277	3	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911443	32911443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	34	280	0	ENST00000380152.3:c.2957del	p.Asn986IlefsTer5	p.N986Ifs*5	ENST00000380152		984	gAa/ga																																																																															
B2M	567	MSKCC	GRCh37	15	45003813	45003813	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	44	277	1	ENST00000558401.1:c.67+2T>C		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	13	42	1	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255142	16255143	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	89	203	0	ENST00000375759.3:c.2417_2418delGA	p.Arg806ThrfsTer14	p.R806Tfs*14	ENST00000375759	NM_015001.2	803	GAg/g																																																																															
POLE	5426	MSKCC	GRCh37	12	133245024	133245024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	173	330	2	ENST00000320574.5:c.2091del	p.Leu698CysfsTer94	p.L698Cfs*94	ENST00000320574	NM_006231.2	697	ccC/cc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	64	263	1	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56865794	56865794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	54	238	0	ENST00000308159.5:c.1126C>T	p.Arg376Cys	p.R376C	ENST00000308159	NM_014669.4	376	Cgt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829454	72829454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	93	338	0	ENST00000268489.5:c.7127C>T	p.Thr2376Met	p.T2376M	ENST00000268489	NM_006885.3	2376	aCg/aTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	38	342	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	70	310	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	108	450	1	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	45	322	2	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	109	363	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177984	56177986	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	79	271	0	ENST00000399503.3:c.2965_2967del	p.Ser989del	p.S989del	ENST00000399503	NM_005921.1	986	cCTTct/cct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	122	350	2	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591246	67591246	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	44	240	0	ENST00000274335.5:c.1746-2A>G		p.X582_splice	ENST00000274335		582																																																																																
POLD1	5424	MSKCC	GRCh37	19	50906370	50906370	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	79	365	0	ENST00000440232.2:c.1036del	p.Glu346SerfsTer47	p.E346Sfs*47	ENST00000440232	NM_002691.3	344	tGg/tg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	181	328	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38616977	38616977	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	67	280	0	ENST00000299084.4:c.395delA	p.Asn132MetfsTer20	p.N132Mfs*20	ENST00000299084	NM_152594.2	130	tcA/tc																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655248	45655248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	105	328	0	ENST00000407780.3:c.604G>A	p.Val202Met	p.V202M	ENST00000407780	NM_001283052.1	202	Gtg/Atg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1620979	1620979	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1329397192		P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	99	350	2	ENST00000344749.5:c.1081del	p.Gln361ArgfsTer33	p.Q361Rfs*33	ENST00000344749	NM_001136139.2	361	Cag/ag																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205092	38205092	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	74	368	5	ENST00000317025.8:c.598del	p.Ser200AlafsTer20	p.S200Afs*20	ENST00000317025	NM_023034.1	200	Agc/gc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860074	57860075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	88	331	1	ENST00000228682.2:c.821dupG	p.Cys275LeufsTer32	p.C275Lfs*32	ENST00000228682	NM_005269.2	272	tgg/tGgg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175996765	175996765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	21	320	0	ENST00000367669.3:c.1672G>T	p.Val558Leu	p.V558L	ENST00000367669	NM_022457.5	558	Gtg/Ttg																																																																															
RAB35	11021	MSKCC	GRCh37	12	120541733	120541733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	98	338	0	ENST00000229340.5:c.124G>A	p.Gly42Arg	p.G42R	ENST00000229340	NM_006861.6	42	Gga/Aga																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928893	49928893	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	106	358	0	ENST00000296474.3:c.3473A>G	p.His1158Arg	p.H1158R	ENST00000296474	NM_002447.2	1158	cAt/cGt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11303359	11303359	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	84	277	0	ENST00000361445.4:c.1226-2A>G		p.X409_splice	ENST00000361445	NM_004958.3	409																																																																																
SPEN	23013	MSKCC	GRCh37	1	16256107	16256108	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	87	299	0	ENST00000375759.3:c.3379_3380del	p.Glu1127ArgfsTer3	p.E1127Rfs*3	ENST00000375759	NM_015001.2	1124	ccAGag/ccag																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933741	36933741	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	97	358	0	ENST00000361632.4:c.1658A>G	p.Glu553Gly	p.E553G	ENST00000361632		553	gAg/gGg																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117690314	117690314	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	23	289	0	ENST00000369458.3:c.815T>C	p.Leu272Pro	p.L272P	ENST00000369458	NM_024626.3	272	cTt/cCt																																																																															
ATM	472	MSKCC	GRCh37	11	108183191	108183191	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	34	201	0	ENST00000278616.4:c.5977del	p.Ser1993ValfsTer7	p.S1993Vfs*7	ENST00000278616	NM_000051.3	1991	gAa/ga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	461421	461421	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	70	302	0	ENST00000399788.2:c.1099G>T	p.Gly367Ter	p.G367*	ENST00000399788	NM_001042603.1	367	Gga/Tga																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18650592	18650593	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	74	351	0	ENST00000266497.5:c.2805dup	p.Ile936TyrfsTer21	p.I936Yfs*21	ENST00000266497		935	ctt/cTtt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245882	46245882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	113	232	0	ENST00000334344.6:c.3976C>T	p.Pro1326Ser	p.P1326S	ENST00000334344	NM_152641.2	1326	Cca/Tca																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527868	103527868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	56	195	0	ENST00000355739.4:c.3176G>A	p.Gly1059Asp	p.G1059D	ENST00000355739	NM_000123.3	1059	gGc/gAc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986566	36986566	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	21	217	0	ENST00000354822.5:c.1123T>C	p.Ser375Pro	p.S375P	ENST00000354822	NM_001079668.2	375	Tcc/Ccc																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68353736	68353736	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	44	166	0	ENST00000487270.1:c.573-2A>G		p.X191_splice	ENST00000487270	NM_133509.3	191																																																																																
B2M	567	MSKCC	GRCh37	15	45007893	45007893	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	24	248	0	ENST00000558401.1:c.340A>T	p.Lys114Ter	p.K114*	ENST00000558401	NM_004048.2	114	Aag/Tag																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729210	66729210	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	24	352	0	ENST00000307102.5:c.418A>C	p.Ser140Arg	p.S140R	ENST00000307102	NM_002755.3	140	Agt/Cgt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434833	99434834	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	86	246	0	ENST00000268035.6:c.924dup	p.Ser309LeufsTer17	p.S309Lfs*17	ENST00000268035	NM_000875.3	307	tgc/tgCc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136361	2136361	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	95	329	0	ENST00000219476.3:c.4830G>A	p.Trp1610Ter	p.W1610*	ENST00000219476	NM_000548.3	1610	tgG/tgA																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778207	3778207	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	91	331	0	ENST00000262367.5:c.6841del	p.Ala2281GlnfsTer21	p.A2281Qfs*21	ENST00000262367	NM_004380.2	2281	Gca/ca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993735	72993735	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	101	244	0	ENST00000268489.5:c.310C>G	p.Pro104Ala	p.P104A	ENST00000268489	NM_006885.3	104	Ccc/Gcc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40462592	40462592	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	96	332	0	ENST00000345506.4:c.2290G>T	p.Val764Leu	p.V764L	ENST00000345506	NM_003152.3	764	Gtg/Ttg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435921	56435921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	67	258	0	ENST00000407977.2:c.1216G>A	p.Ala406Thr	p.A406T	ENST00000407977		406	Gca/Aca																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78854243	78854243	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs76608178		P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	98	335	0	ENST00000306801.3:c.1538A>C	p.Asn513Thr	p.N513T	ENST00000306801	NM_020761.2	513	aAc/aCc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56376790	56376790	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	40	218	0	ENST00000348428.3:c.828+2T>C		p.X276_splice	ENST00000348428	NM_006785.3	276																																																																																
INSR	3643	MSKCC	GRCh37	19	7267424	7267424	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	42	262	0	ENST00000302850.5:c.584A>G	p.Asn195Ser	p.N195S	ENST00000302850	NM_000208.2	195	aAc/aGc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288441	15288441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	62	198	0	ENST00000263388.2:c.4298G>A	p.Cys1433Tyr	p.C1433Y	ENST00000263388	NM_000435.2	1433	tGc/tAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227811	36227811	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	128	343	0	ENST00000222270.7:c.7298-2A>G		p.X2433_splice	ENST00000222270	NM_014727.1	2433																																																																																
ERF	2077	MSKCC	GRCh37	19	42753544	42753545	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	109	318	0	ENST00000222329.4:c.719dup	p.Gly241TrpfsTer3	p.G241Wfs*3	ENST00000222329	NM_006494.2	240	ggt/ggGt																																																																															
CIC	23152	MSKCC	GRCh37	19	42792089	42792089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	81	259	0	ENST00000575354.2:c.893G>A	p.Arg298Gln	p.R298Q	ENST00000575354	NM_015125.3	298	cGg/cAg																																																																															
BARD1	580	MSKCC	GRCh37	2	215645495	215645495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	100	366	0	ENST00000260947.4:c.1103G>A	p.Cys368Tyr	p.C368Y	ENST00000260947	NM_000465.2	368	tGc/tAc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39704816	39704817	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	37	102	0	ENST00000361337.2:c.162_163del	p.His54GlnfsTer4	p.H54Qfs*4	ENST00000361337	NM_003286.2	54	cAT/c																																																																															
EP300	2033	MSKCC	GRCh37	22	41546064	41546065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	101	314	0	ENST00000263253.7:c.2683dupC	p.Gln895ProfsTer14	p.Q895Pfs*14	ENST00000263253	NM_001429.3	893	-/C																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275323	41275323	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	17	282	0	ENST00000349496.5:c.1489C>G	p.Leu497Val	p.L497V	ENST00000349496	NM_001904.3	497	Ctc/Gtc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808651	1808651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	61	403	1	ENST00000260795.2:c.2264C>T	p.Thr755Met	p.T755M	ENST00000260795		755	aCg/aTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268222	153268222	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	63	137	0	ENST00000281708.4:c.586A>G	p.Thr196Ala	p.T196A	ENST00000281708	NM_033632.3	196	Acc/Gcc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294050	1294050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	72	370	0	ENST00000310581.5:c.951G>T	p.Trp317Cys	p.W317C	ENST00000310581	NM_198253.2	317	tgG/tgT																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38957774	38957775	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	43	276	0	ENST00000357387.3:c.2478dup	p.Gln827ThrfsTer15	p.Q827Tfs*15	ENST00000357387	NM_152756.3	826	-/A																																																																															
RASA1	5921	MSKCC	GRCh37	5	86659282	86659282	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	47	201	0	ENST00000274376.6:c.1571T>C	p.Val524Ala	p.V524A	ENST00000274376	NM_002890.2	524	gTa/gCa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176719025	176719025	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	68	206	0	ENST00000439151.2:c.6329A>G	p.Gln2110Arg	p.Q2110R	ENST00000439151	NM_022455.4	2110	cAg/cGg																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778216	27778216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	80	297	0	ENST00000369163.2:c.365C>T	p.Pro122Leu	p.P122L	ENST00000369163	NM_003536.2	122	cCc/cTc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468191	50468191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	94	305	0	ENST00000331340.3:c.1426A>G	p.Met476Val	p.M476V	ENST00000331340	NM_006060.4	476	Atg/Gtg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508538	106508538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	76	183	0	ENST00000359195.3:c.532C>T	p.Arg178Cys	p.R178C	ENST00000359195	NM_002649.2	178	Cgt/Tgt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740787	145740787	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	113	372	0	ENST00000428558.2:c.1313A>G	p.Gln438Arg	p.Q438R	ENST00000428558	NM_004260.3	438	cAa/cGa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245132	53245133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	80	307	0	ENST00000375401.3:c.807dup	p.Thr270HisfsTer20	p.T270Hfs*20	ENST00000375401	NM_004187.3	269	-/C																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412775	63412775	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	90	300	0	ENST00000330258.3:c.392A>G	p.Gln131Arg	p.Q131R	ENST00000330258	NM_152424.3	131	cAg/cGg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412839	63412839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	100	329	0	ENST00000330258.3:c.328G>A	p.Val110Ile	p.V110I	ENST00000330258	NM_152424.3	110	Gtc/Atc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0039235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	10	278	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	130	476	0	ENST00000250448.2:c.781C>T	p.Arg261Cys	p.R261C	ENST00000250448	NM_004496.3	261	Cgc/Tgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692791	89692791	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	73	308	0	ENST00000371953.3:c.275A>T	p.Asp92Val	p.D92V	ENST00000371953	NM_000314.4	92	gAc/gTc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907432	32907432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	69	270	0	ENST00000380152.3:c.1817C>T	p.Pro606Leu	p.P606L	ENST00000380152		606	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	5	302	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974770	21974775	+	inframe_deletion	In_Frame_Del	DEL	GGCCGT	GGCCGT	-			P-0039457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	15	266	0	ENST00000304494.5:c.52_57delACGGCC	p.Thr18_Ala19del	p.T18_A19del	ENST00000304494	NM_000077.4	18	ACGGCC/-																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0039469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	221	211	1	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38279438	38279438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2293	176	527	0	ENST00000425967.3:c.1051G>A	p.Asp351Asn	p.D351N	ENST00000425967	NM_001174067.1	351	Gac/Aac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828002	72828002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	726	771	0	ENST00000268489.5:c.8579G>A	p.Gly2860Glu	p.G2860E	ENST00000268489	NM_006885.3	2860	gGa/gAa																																																																															
CD79B	974	MSKCC	GRCh37	17	62007240	62007240	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	263	679	1	ENST00000392795.3:c.442A>T	p.Thr148Ser	p.T148S	ENST00000392795	NM_001039933.1	148	Acc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	83	343	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0039568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	131	570	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44945109	44945109	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0039568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	62	265	0	ENST00000377967.4:c.3434-1G>T		p.X1145_splice	ENST00000377967	NM_021140.2	1145																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49435267	49435267	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	147	685	0	ENST00000301067.7:c.6286A>G	p.Lys2096Glu	p.K2096E	ENST00000301067	NM_003482.3	2096	Aag/Gag																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56787266	56787266	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	122	496	0	ENST00000337432.4:c.752A>G	p.Asp251Gly	p.D251G	ENST00000337432	NM_058216.2	251	gAc/gGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115972	8115973	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	71	361	0	ENST00000346208.3:c.1320dup	p.Ala441ArgfsTer66	p.A441Rfs*66	ENST00000346208		440	acc/aCcc																																																																															
APC	324	MSKCC	GRCh37	5	112179432	112179432	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	48	482	0	ENST00000257430.4:c.8141G>C	p.Arg2714Pro	p.R2714P	ENST00000257430	NM_000038.5	2714	cGt/cCt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0039584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	139	513	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578188	7578188	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	397	805	0	ENST00000269305.4:c.661G>T	p.Glu221Ter	p.E221*	ENST00000269305	NM_001126112.2	221	Gag/Tag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2191199	2191199	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	53	893	0	ENST00000398665.3:c.453C>G	p.Ile151Met	p.I151M	ENST00000398665	NM_032482.2	151	atC/atG																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45422944	45422944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	21	372	0	ENST00000262160.6:c.184G>A	p.Glu62Lys	p.E62K	ENST00000262160	NM_005901.5	62	Gag/Aag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603047	48603047	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	30	386	0	ENST00000342988.3:c.1348C>T	p.Gln450Ter	p.Q450*	ENST00000342988	NM_005359.5	450	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	60	488	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133253176	133253176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	33	613	1	ENST00000320574.5:c.865G>A	p.Glu289Lys	p.E289K	ENST00000320574	NM_006231.2	289	Gag/Aag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420315	88420315	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	58	506	0	ENST00000360948.2:c.2371C>G	p.Arg791Gly	p.R791G	ENST00000360948	NM_001012338.2	791	Cgg/Ggg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561114	9561114	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	67	459	0	ENST00000353224.5:c.668C>A	p.Ser223Ter	p.S223*	ENST00000353224	NM_177990.2	223	tCg/tAg																																																																															
IRF4	3662	MSKCC	GRCh37	6	405093	405093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	280	659	0	ENST00000380956.4:c.1175C>G	p.Pro392Arg	p.P392R	ENST00000380956	NM_001195286.1	392	cCa/cGa																																																																															
AR	367	MSKCC	GRCh37	X	66765891	66765891	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	44	1264	0	ENST00000374690.3:c.903G>C	p.Lys301Asn	p.K301N	ENST00000374690	NM_000044.3	301	aaG/aaC																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427579	72427579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	106	398	0	ENST00000477973.2:c.909C>T	p.Thr304Met	p.T304M	ENST00000477973	NM_012234.5	304	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	106	501	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	98	533	5	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1185	62	844	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	138	540	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
B2M	567	MSKCC	GRCh37	15	45007620	45007620	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs111947448		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	59	260	0	ENST00000558401.1:c.68-1G>T		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	90	363	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273105	18273105	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	213	852	2	ENST00000222254.8:c.1000del	p.Asp334ThrfsTer7	p.D334Tfs*7	ENST00000222254	NM_005027.3	332	tGg/tg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17937659	17937659	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144968714		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	235	850	1	ENST00000458235.1:c.3268G>A	p.Ala1090Thr	p.A1090T	ENST00000458235	NM_000215.3	1090	Gcc/Acc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317461	1317461	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	204	827	0				ENST00000381566																																																																																		
MED12	9968	MSKCC	GRCh37	X	70343006	70343006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	188	371	1	ENST00000374080.3:c.1547G>A	p.Arg516His	p.R516H	ENST00000374080		516	cGt/cAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138521	11138521	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	165	778	0	ENST00000344626.4:c.3277C>T	p.Arg1093Ter	p.R1093*	ENST00000344626	NM_003072.3	1093	Cga/Tga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678509	88678509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	115	652	2	ENST00000360948.2:c.1027C>T	p.Arg343Trp	p.R343W	ENST00000360948	NM_001012338.2	343	Cgg/Tgg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	215	529	1	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																															
EP300	2033	MSKCC	GRCh37	22	41568502	41568502	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	89	416	0	ENST00000263253.7:c.4453-1G>T		p.X1485_splice	ENST00000263253	NM_001429.3	1485																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	90	429	0	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	94	379	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																															
CASP8	841	MSKCC	GRCh37	2	202149946	202149946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	149	773	0	ENST00000358485.4:c.1387G>A	p.Ala463Thr	p.A463T	ENST00000358485	NM_001080125.1	463	Gcc/Acc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	69	319	0	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132552	11132552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	226	1078	1	ENST00000344626.4:c.2768C>T	p.Ala923Val	p.A923V	ENST00000344626	NM_003072.3	923	gCg/gTg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181431010	181431010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	226	915	0	ENST00000325404.1:c.862G>A	p.Ala288Thr	p.A288T	ENST00000325404	NM_003106.3	288	Gcc/Acc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187947	32187947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	232	997	1	ENST00000375023.3:c.1274C>T	p.Ser425Leu	p.S425L	ENST00000375023	NM_004557.3	425	tCg/tTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528707	8528707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	103	450	1	ENST00000356435.5:c.425C>T	p.Thr142Met	p.T142M	ENST00000356435		142	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175541	112175541	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	32	342	0	ENST00000257430.4:c.4251del	p.Ile1418Ter	p.I1418*	ENST00000257430	NM_000038.5	1417	aTt/at																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290231	15290231	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1334	261	1183	0	ENST00000263388.2:c.3404del	p.Gly1135ValfsTer137	p.G1135Vfs*137	ENST00000263388	NM_000435.2	1135	gGt/gt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	149	916	3	ENST00000261937.6:c.89dupC	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578421	7578421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	235	922	0	ENST00000269305.4:c.509C>T	p.Thr170Met	p.T170M	ENST00000269305	NM_001126112.2	170	aCg/aTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68844112	68844112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	177	600	2	ENST00000261769.5:c.700G>A	p.Ala234Thr	p.A234T	ENST00000261769	NM_004360.3	234	Gct/Act																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271870	15271870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	228	1101	1	ENST00000263388.2:c.6569C>T	p.Ala2190Val	p.A2190V	ENST00000263388	NM_000435.2	2190	gCg/gTg																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841307	15841307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	178	362	1	ENST00000307771.7:c.1391G>A	p.Arg464His	p.R464H	ENST00000307771	NM_005089.3	464	cGt/cAt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	172	931	1	ENST00000337652.1:c.1561dupC	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38279324	38279324	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774768179		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	216	895	0	ENST00000425967.3:c.1165G>A	p.Val389Ile	p.V389I	ENST00000425967	NM_001174067.1	389	Gtt/Att																																																																															
NF2	4771	MSKCC	GRCh37	22	30074207	30074207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	117	630	0	ENST00000338641.4:c.1469C>T	p.Pro490Leu	p.P490L	ENST00000338641	NM_000268.3	490	cCg/cTg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643617	52643617	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199976998		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	155	590	2	ENST00000394830.3:c.2279G>A	p.Arg760His	p.R760H	ENST00000394830	NM_018313.4	760	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105676	27105678	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	104	474	3	ENST00000324856.7:c.5299_5301del	p.Glu1767del	p.E1767del	ENST00000324856	NM_006015.4	1763	GAA/-																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979986	7979987	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	167	899	2	ENST00000319144.4:c.1350dup	p.Leu451AlafsTer27	p.L451Afs*27	ENST00000319144	NM_001139.2	450	-/G																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15273335	15273335	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115582213		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	272	984	0	ENST00000263388.2:c.5854G>A	p.Val1952Met	p.V1952M	ENST00000263388	NM_000435.2	1952	Gtg/Atg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905974	50905974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	205	1109	0	ENST00000440232.2:c.946G>A	p.Asp316Asn	p.D316N	ENST00000440232	NM_002691.3	316	Gat/Aat																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748583	40748583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	93	523	0	ENST00000373198.4:c.2933C>T	p.Ala978Val	p.A978V	ENST00000373198	NM_133170.3	978	gCg/gTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	354	666	7	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643525	38643525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	153	675	0	ENST00000299084.4:c.995G>A	p.Arg332His	p.R332H	ENST00000299084	NM_152594.2	332	cGt/cAt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	221	999	4	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	120	549	2	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1299	255	1114	5	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420273	49420273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	233	958	1	ENST00000301067.7:c.15476G>A	p.Arg5159Gln	p.R5159Q	ENST00000301067	NM_003482.3	5159	cGg/cAg																																																																															
B2M	567	MSKCC	GRCh37	15	45007752	45007753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	91	408	0	ENST00000558401.1:c.204dup	p.Val69SerfsTer21	p.V69Sfs*21	ENST00000558401	NM_004048.2	67	gaa/gAaa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226684	2226684	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	190	989	0	ENST00000398665.3:c.4164G>T	p.Glu1388Asp	p.E1388D	ENST00000398665	NM_032482.2	1388	gaG/gaT																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81934267	81934267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	217	910	1	ENST00000359376.3:c.1244G>A	p.Arg415His	p.R415H	ENST00000359376	NM_002661.3	415	cGt/cAt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729964	41729964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	126	830	0	ENST00000242208.4:c.565G>A	p.Gly189Arg	p.G189R	ENST00000242208	NM_002192.2	189	Ggg/Agg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112323	115112324	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	56	266	1	ENST00000257566.3:c.1416_1417del	p.Leu473ProfsTer218	p.L473Pfs*218	ENST00000257566	NM_016569.3	472	gcGCtc/gctc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117674227	117674227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	145	640	0	ENST00000368508.3:c.4247C>T	p.Ala1416Val	p.A1416V	ENST00000368508	NM_002944.2	1416	gCc/gTc																																																																															
ALK	238	MSKCC	GRCh37	2	29917736	29917736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150966028		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1157	72	898	0	ENST00000389048.3:c.932G>A	p.Arg311His	p.R311H	ENST00000389048	NM_004304.4	311	cGt/cAt																																																																															
SMO	6608	MSKCC	GRCh37	7	128845574	128845574	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	184	691	0	ENST00000249373.3:c.871C>T	p.Arg291Ter	p.R291*	ENST00000249373	NM_005631.4	291	Cga/Tga																																																																															
CIC	23152	MSKCC	GRCh37	19	42794869	42794869	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	158	874	0	ENST00000575354.2:c.1953delC	p.Ala652ProfsTer76	p.A652Pfs*76	ENST00000575354	NM_015125.3	650	gCc/gc																																																																															
APC	324	MSKCC	GRCh37	5	112175211	112175211	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	46	258	1	ENST00000257430.4:c.3920del	p.Ile1307LysfsTer14	p.I1307Kfs*14	ENST00000257430	NM_000038.5	1307	aTa/aa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21630862	21630862	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202110155		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	129	709	1	ENST00000421138.2:c.742G>A	p.Ala248Thr	p.A248T	ENST00000421138		248	Gca/Aca																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411266	63411266	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778813513		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	192	544	0	ENST00000330258.3:c.1901G>A	p.Arg634His	p.R634H	ENST00000330258	NM_152424.3	634	cGt/cAt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGG			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1409	173	1227	0	ENST00000220592.5:c.1804_1806dup	p.Pro602dup	p.P602dup	ENST00000220592	NM_012154.3	602	-/CCC																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321399	1321399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	142	428	1	ENST00000381566.1:c.356C>A	p.Pro119His	p.P119H	ENST00000381566		119	cCc/cAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880926	134880926	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371083718		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	164	685	0	ENST00000398015.3:c.1489C>T	p.Arg497Trp	p.R497W	ENST00000398015	NM_004441.4	497	Cgg/Tgg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900206	101900206	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	101	383	0	ENST00000374994.4:c.640G>T	p.Gly214Cys	p.G214C	ENST00000374994	NM_004612.2	214	Ggt/Tgt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222199	2222199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1238	275	1171	0	ENST00000398665.3:c.3031C>T	p.Arg1011Trp	p.R1011W	ENST00000398665	NM_032482.2	1011	Cgg/Tgg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375463	15375463	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	231	1075	2	ENST00000263377.2:c.964C>T	p.Arg322Trp	p.R322W	ENST00000263377	NM_058243.2	322	Cgg/Tgg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128419995	128419995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	394	898	0	ENST00000265960.3:c.433C>T	p.Arg145Cys	p.R145C	ENST00000265960	NM_001006617.1	145	Cgc/Tgc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436549	110436549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	231	1092	0	ENST00000375856.3:c.1852G>A	p.Ala618Thr	p.A618T	ENST00000375856	NM_003749.2	618	Gcg/Acg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916193	9916193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	51	626	0	ENST00000330684.3:c.2096C>A	p.Pro699His	p.P699H	ENST00000330684	NM_001134407.1	699	cCc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817741	3817741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	134	573	0	ENST00000262367.5:c.3230C>A	p.Pro1077His	p.P1077H	ENST00000262367	NM_004380.2	1077	cCt/cAt																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2494606	2494606	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	62	871	0	ENST00000355716.4:c.746A>G	p.Glu249Gly	p.E249G	ENST00000355716	NM_003820.2	249	gAa/gGa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775749	9775749	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150205370		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	225	1036	0	ENST00000377346.4:c.292G>A	p.Val98Ile	p.V98I	ENST00000377346	NM_005026.3	98	Gtc/Atc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11294234	11294235	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	186	671	1	ENST00000361445.4:c.2296dup	p.Arg766ProfsTer24	p.R766Pfs*24	ENST00000361445	NM_004958.3	766	cga/cCga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260335	16260335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	144	612	0	ENST00000375759.3:c.7600C>A	p.Leu2534Met	p.L2534M	ENST00000375759	NM_015001.2	2534	Ctg/Atg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797846	45797846	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138089183		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	190	869	0	ENST00000372115.3:c.883C>T	p.Arg295Cys	p.R295C	ENST00000372115	NM_001048171.1	295	Cgc/Tgc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65323362	65323362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	144	610	1	ENST00000342505.4:c.1435G>A	p.Val479Ile	p.V479I	ENST00000342505	NM_002227.2	479	Gtc/Atc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120502048	120502048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	118	469	1	ENST00000256646.2:c.1993C>T	p.Arg665Cys	p.R665C	ENST00000256646	NM_024408.3	665	Cgc/Tgc																																																																															
FH	2271	MSKCC	GRCh37	1	241663754	241663754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	175	884	0	ENST00000366560.3:c.1373C>T	p.Ala458Val	p.A458V	ENST00000366560	NM_000143.3	458	gCt/gTt																																																																															
FH	2271	MSKCC	GRCh37	1	241675417	241675417	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	54	358	0	ENST00000366560.3:c.405T>G	p.His135Gln	p.H135Q	ENST00000366560	NM_000143.3	135	caT/caG																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100630	8100630	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	173	1180	0	ENST00000346208.3:c.604C>A	p.Arg202Ser	p.R202S	ENST00000346208		202	Cgt/Agt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741571	17741571	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	93	524	0	ENST00000250003.3:c.242T>C	p.Val81Ala	p.V81A	ENST00000250003	NM_002478.4	81	gTg/gCg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948208	71948208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1415	324	1321	0	ENST00000298229.2:c.2920G>C	p.Ala974Pro	p.A974P	ENST00000298229	NM_001567.3	974	Gcc/Ccc																																																																															
ATM	472	MSKCC	GRCh37	11	108143518	108143518	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	120	519	0	ENST00000278616.4:c.3223A>G	p.Thr1075Ala	p.T1075A	ENST00000278616	NM_000051.3	1075	Aca/Gca																																																																															
ATM	472	MSKCC	GRCh37	11	108190758	108190758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	79	429	0	ENST00000278616.4:c.6425C>T	p.Thr2142Ile	p.T2142I	ENST00000278616	NM_000051.3	2142	aCa/aTa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307295	118307295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	20	53	0	ENST00000534358.1:c.68G>A	p.Gly23Glu	p.G23E	ENST00000534358	NM_005933.3	23	gGg/gAg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118360547	118360547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	143	544	0	ENST00000534358.1:c.4520C>T	p.Pro1507Leu	p.P1507L	ENST00000534358	NM_005933.3	1507	cCt/cTt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18499668	18499669	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	140	605	2	ENST00000266497.5:c.1526dup	p.Asn509LysfsTer4	p.N509Kfs*4	ENST00000266497		508	gta/gtAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431180	49431180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	193	893	1	ENST00000301067.7:c.9959C>T	p.Ala3320Val	p.A3320V	ENST00000301067	NM_003482.3	3320	gCc/gTc																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50484308	50484308	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	184	696	3	ENST00000394963.4:c.1068G>T	p.Glu356Asp	p.E356D	ENST00000394963	NM_003076.4	356	gaG/gaT																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145109	58145109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	174	648	0	ENST00000257904.6:c.235G>A	p.Ala79Thr	p.A79T	ENST00000257904	NM_000075.3	79	Gcc/Acc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32890665	32890665	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	62	307	0	ENST00000380152.3:c.67+1G>A		p.X23_splice	ENST00000380152		23																																																																																
DICER1	23405	MSKCC	GRCh37	14	95557644	95557644	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	125	564	0	ENST00000343455.3:c.5423T>C	p.Met1808Thr	p.M1808T	ENST00000343455	NM_177438.2	1808	aTg/aCg																																																																															
MGA	23269	MSKCC	GRCh37	15	42054381	42054381	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	99	366	1	ENST00000219905.7:c.7565A>G	p.Gln2522Arg	p.Q2522R	ENST00000219905	NM_001164273.1	2522	cAa/cGa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43767868	43767868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	152	646	1	ENST00000382044.4:c.980C>T	p.Pro327Leu	p.P327L	ENST00000382044	NM_001141980.1	327	cCt/cTt																																																																															
CD276	80381	MSKCC	GRCh37	15	73996269	73996269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	11	62	0	ENST00000318443.5:c.1003G>A	p.Glu335Lys	p.E335K	ENST00000318443	NM_001024736.1	335	Gag/Aag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3832684	3832684	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	118	504	0	ENST00000262367.5:c.1573+1G>A		p.X525_splice	ENST00000262367	NM_004380.2	525																																																																																
CTCF	10664	MSKCC	GRCh37	16	67662297	67662297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	114	538	1	ENST00000264010.4:c.1543C>T	p.Arg515Cys	p.R515C	ENST00000264010	NM_006565.3	515	Cgc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832571	72832571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	98	452	0	ENST00000268489.5:c.4010G>T	p.Ser1337Ile	p.S1337I	ENST00000268489	NM_006885.3	1337	aGc/aTc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81925158	81925158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	141	658	0	ENST00000359376.3:c.949C>A	p.Pro317Thr	p.P317T	ENST00000359376	NM_002661.3	317	Ccc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7572962	7572963	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	123	527	0	ENST00000269305.4:c.1146dup	p.Leu383ThrfsTer9	p.L383Tfs*9	ENST00000269305	NM_001126112.2	382	-/A																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011114	12011114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	37	321	0	ENST00000353533.5:c.521G>A	p.Cys174Tyr	p.C174Y	ENST00000353533	NM_003010.3	174	tGt/tAt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011210	12011210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	36	303	0	ENST00000353533.5:c.617G>A	p.Gly206Asp	p.G206D	ENST00000353533	NM_003010.3	206	gGc/gAc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657589	37657589	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	152	659	0	ENST00000447079.4:c.2506A>G	p.Ile836Val	p.I836V	ENST00000447079	NM_015083.1	836	Atc/Gtc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682337	37682337	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	151	750	2	ENST00000447079.4:c.3528G>T	p.Glu1176Asp	p.E1176D	ENST00000447079	NM_015083.1	1176	gaG/gaT																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40461396	40461396	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	126	703	0	ENST00000345506.4:c.2116T>G	p.Phe706Val	p.F706V	ENST00000345506	NM_003152.3	706	Ttt/Gtt																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870634	40870634	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	144	584	0	ENST00000428826.2:c.769T>C	p.Tyr257His	p.Y257H	ENST00000428826		257	Tat/Cat																																																																															
SPOP	8405	MSKCC	GRCh37	17	47684666	47684666	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	176	601	0	ENST00000347630.2:c.783del	p.Lys262ArgfsTer24	p.K262Rfs*24	ENST00000347630	NM_001007230.1	261	ggG/gg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59857753	59857753	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	83	360	0	ENST00000259008.2:c.1804G>T	p.Asp602Tyr	p.D602Y	ENST00000259008	NM_032043.2	602	Gat/Tat																																																																															
CD79B	974	MSKCC	GRCh37	17	62006802	62006802	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	175	890	0	ENST00000392795.3:c.586A>G	p.Thr196Ala	p.T196A	ENST00000392795	NM_001039933.1	196	Acc/Gcc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120480	70120480	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1377	241	1182	0	ENST00000245479.2:c.1486del	p.Gln496SerfsTer27	p.Q496Sfs*27	ENST00000245479	NM_000346.3	494	agC/ag																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45377665	45377666	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	74	247	1	ENST00000262160.6:c.763dup	p.Ser255PhefsTer4	p.S255Ffs*4	ENST00000262160	NM_005901.5	255	tcc/tTcc																																																																															
BCL2	596	MSKCC	GRCh37	18	60795965	60795965	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	135	647	0	ENST00000333681.4:c.613A>C	p.Ser205Arg	p.S205R	ENST00000333681		205	Agc/Cgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210517	5210517	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	158	815	0	ENST00000357368.4:c.5450A>G	p.Gln1817Arg	p.Q1817R	ENST00000357368	NM_002850.3	1817	cAg/cGg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5258070	5258070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	138	721	0	ENST00000357368.4:c.664G>A	p.Ala222Thr	p.A222T	ENST00000357368	NM_002850.3	222	Gcc/Acc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10286284	10286284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	183	666	0	ENST00000340748.4:c.532C>T	p.Arg178Trp	p.R178W	ENST00000340748		178	Cgg/Tgg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11022882	11022882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1316	261	1167	1	ENST00000327064.4:c.581G>A	p.Gly194Asp	p.G194D	ENST00000327064	NM_199141.1	194	gGc/gAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121109	11121109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	224	917	0	ENST00000344626.4:c.2176C>T	p.Arg726Cys	p.R726C	ENST00000344626	NM_003072.3	726	Cgt/Tgt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291804	15291804	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1242	208	1156	2	ENST00000263388.2:c.2962T>C	p.Cys988Arg	p.C988R	ENST00000263388	NM_000435.2	988	Tgc/Cgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211930	36211930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1409	298	1230	2	ENST00000222270.7:c.1681C>T	p.Pro561Ser	p.P561S	ENST00000222270	NM_014727.1	561	Cct/Tct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224174	36224174	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368273689		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	200	883	0	ENST00000222270.7:c.6724G>A	p.Val2242Met	p.V2242M	ENST00000222270	NM_014727.1	2242	Gtg/Atg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52723490	52723490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	105	514	0	ENST00000322088.6:c.1351C>T	p.Leu451Phe	p.L451F	ENST00000322088	NM_014225.5	451	Ctt/Ttt																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30309720	30309720	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	162	731	0	ENST00000307677.4:c.302A>G	p.Tyr101Cys	p.Y101C	ENST00000307677	NM_138578.1	101	tAc/tGc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31369202	31369202	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	162	670	1	ENST00000328111.2:c.186T>G	p.Ser62Arg	p.S62R	ENST00000328111	NM_006892.3	62	agT/agG																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264199	46264199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	107	438	0	ENST00000371998.3:c.1246G>A	p.Ala416Thr	p.A416T	ENST00000371998		416	Gcc/Acc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513315	44513315	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	175	934	0	ENST00000291552.4:c.620G>T	p.Arg207Ile	p.R207I	ENST00000291552	NM_006758.2	207	aGa/aTa																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130433	29130434	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs876661156		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	170	724	0	ENST00000328354.6:c.276dup	p.Trp93LeufsTer15	p.W93Lfs*15	ENST00000328354	NM_007194.3	92	-/C																																																																															
NF2	4771	MSKCC	GRCh37	22	30070891	30070891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	168	901	0	ENST00000338641.4:c.1407G>T	p.Lys469Asn	p.K469N	ENST00000338641	NM_000268.3	469	aaG/aaT																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458474	12458474	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	198	807	0	ENST00000287820.6:c.1091A>C	p.Lys364Thr	p.K364T	ENST00000287820	NM_015869.4	364	aAa/aCa																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114684	73114684	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	112	565	0	ENST00000356692.5:c.1065G>T	p.Glu355Asp	p.E355D	ENST00000356692		355	gaG/gaT																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445112	89445112	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	71	367	0	ENST00000336596.2:c.1431+1G>A		p.X477_splice	ENST00000336596	NM_005233.5	477																																																																																
PIK3CB	5291	MSKCC	GRCh37	3	138456730	138456730	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	67	405	0	ENST00000289153.2:c.622-2A>G		p.X208_splice	ENST00000289153	NM_006219.2	208																																																																																
ATR	545	MSKCC	GRCh37	3	142212117	142212117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	93	543	1	ENST00000350721.4:c.5935G>A	p.Gly1979Ser	p.G1979S	ENST00000350721	NM_001184.3	1979	Ggt/Agt																																																																															
ATR	545	MSKCC	GRCh37	3	142232468	142232468	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	78	408	0	ENST00000350721.4:c.4516C>A	p.Leu1506Ile	p.L1506I	ENST00000350721	NM_001184.3	1506	Ctt/Att																																																																															
ATR	545	MSKCC	GRCh37	3	142281817	142281818	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	104	552	0	ENST00000350721.4:c.426dup	p.Gly143TrpfsTer12	p.G143Wfs*12	ENST00000350721	NM_001184.3	142	-/T																																																																															
BCL6	604	MSKCC	GRCh37	3	187442765	187442765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	119	645	1	ENST00000232014.4:c.1941C>A	p.Ser647Arg	p.S647R	ENST00000232014	NM_001130845.1	647	agC/agA																																																																															
TET2	54790	MSKCC	GRCh37	4	106156073	106156073	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	97	351	0	ENST00000380013.4:c.974A>G	p.Gln325Arg	p.Q325R	ENST00000380013	NM_001127208.2	325	cAa/cGa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950345	38950345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	122	475	0	ENST00000357387.3:c.3605G>T	p.Arg1202Met	p.R1202M	ENST00000357387	NM_152756.3	1202	aGg/aTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67593379	67593379	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	89	336	0	ENST00000274335.5:c.2125T>C	p.Ser709Pro	p.S709P	ENST00000274335		709	Tcc/Ccc																																																																															
MSH3	4437	MSKCC	GRCh37	5	80057481	80057481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	50	267	0	ENST00000265081.6:c.1880G>A	p.Ser627Asn	p.S627N	ENST00000265081	NM_002439.4	627	aGc/aAc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131923342	131923342	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	54	282	0	ENST00000265335.6:c.845T>C	p.Met282Thr	p.M282T	ENST00000265335		282	aTg/aCg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176720932	176720932	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	64	609	0	ENST00000439151.2:c.6563A>G	p.Glu2188Gly	p.E2188G	ENST00000439151	NM_022455.4	2188	gAa/gGa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180049785	180049785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	225	1011	0	ENST00000261937.6:c.1603G>A	p.Val535Met	p.V535M	ENST00000261937	NM_182925.4	535	Gtg/Atg																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402744	20402744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	87	487	0	ENST00000346618.3:c.281C>T	p.Thr94Ile	p.T94I	ENST00000346618	NM_001949.4	94	aCc/aTc																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839999	27839999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	66	579	0	ENST00000328488.2:c.95C>T	p.Ala32Val	p.A32V	ENST00000328488	NM_003533.2	32	gCc/gTc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679701	30679701	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	187	734	0	ENST00000376406.3:c.2018A>T	p.Glu673Val	p.E673V	ENST00000376406	NM_014641.2	673	gAg/gTg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287463	33287463	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	147	661	0	ENST00000374542.5:c.1634C>A	p.Ala545Asp	p.A545D	ENST00000374542	NM_001141970.1	545	gCt/gAt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117708997	117708997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	142	589	0	ENST00000368508.3:c.1960C>T	p.Pro654Ser	p.P654S	ENST00000368508	NM_002944.2	654	Cca/Tca																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005597	150005597	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	97	348	0	ENST00000253339.5:c.628G>T	p.Asp210Tyr	p.D210Y	ENST00000253339		210	Gat/Tat																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528772	157528772	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	164	710	0	ENST00000346085.5:c.6497G>T	p.Gly2166Val	p.G2166V	ENST00000346085	NM_020732.3	2166	gGg/gTg																																																																															
PARK2	5071	MSKCC	GRCh37	6	161807840	161807840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	116	429	0	ENST00000366898.1:c.1153G>A	p.Gly385Arg	p.G385R	ENST00000366898	NM_004562.2	385	Gga/Aga																																																																															
BRAF	673	MSKCC	GRCh37	7	140434564	140434564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	73	232	0	ENST00000288602.6:c.2134G>A	p.Ala712Thr	p.A712T	ENST00000288602	NM_004333.4	712	Gcc/Acc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151833939	151833939	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	129	614	0	ENST00000262189.6:c.14714A>G	p.Asn4905Ser	p.N4905S	ENST00000262189	NM_170606.2	4905	aAc/aGc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285890	38285890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	131	733	0	ENST00000425967.3:c.521C>T	p.Thr174Ile	p.T174I	ENST00000425967	NM_001174067.1	174	aCa/aTa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372396	55372396	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1219	255	1075	1	ENST00000297316.4:c.1086A>T	p.Glu362Asp	p.E362D	ENST00000297316	NM_022454.3	362	gaA/gaT																																																																															
AGO2	27161	MSKCC	GRCh37	8	141572612	141572612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	184	824	0	ENST00000220592.5:c.458G>A	p.Ser153Asn	p.S153N	ENST00000220592	NM_012154.3	153	aGc/aAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229404	98229404	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	64	301	2	ENST00000331920.6:c.2554C>A	p.Leu852Ile	p.L852I	ENST00000331920	NM_000264.3	852	Ctt/Att																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128268619	128268619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1169	485	1032	1	ENST00000265960.3:c.1036G>A	p.Ala346Thr	p.A346T	ENST00000265960	NM_001006617.1	346	Gca/Aca																																																																															
MED12	9968	MSKCC	GRCh37	X	70341566	70341566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	233	435	0	ENST00000374080.3:c.1001C>A	p.Pro334His	p.P334H	ENST00000374080		334	cCt/cAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70356751	70356751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	183	479	2	ENST00000374080.3:c.5423G>T	p.Arg1808Leu	p.R1808L	ENST00000374080		1808	cGg/cTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851694	134851694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	74	670	0	ENST00000398015.3:c.1100G>A	p.Arg367His	p.R367H	ENST00000398015	NM_004441.4	367	cGc/cAc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9525054	9525054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	84	543	0	ENST00000353224.5:c.1831G>A	p.Ala611Thr	p.A611T	ENST00000353224	NM_177990.2	611	Gcc/Acc																																																																															
TERT	7015	MSKCC	GRCh37	5	1271256	1271256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	27	520	0	ENST00000310581.5:c.2446C>T	p.His816Tyr	p.H816Y	ENST00000310581	NM_198253.2	816	Cac/Tac																																																																															
MET	4233	MSKCC	GRCh37	7	116411889	116411904	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCTCTGTTTTAAGAT	CTCTCTGTTTTAAGAT	GAA			P-0039591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	274	1021	1	ENST00000397752.3:c.2888-14_2889delinsGAA		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
EGFR	1956	MSKCC	GRCh37	7	55249015	55249016	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGT			P-0039598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	247	582	0	ENST00000275493.2:c.2313_2314insGGT	p.Asn771_Pro772insGly	p.N771_P772insG	ENST00000275493	NM_005228.3	771	-/GGT																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205368	38205368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	68	777	0	ENST00000317025.8:c.322C>T	p.Pro108Ser	p.P108S	ENST00000317025	NM_023034.1	108	Ccc/Tcc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575521	64575521	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	622	810	1	ENST00000337652.1:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000337652	NM_130803.2	171	Cag/Tag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374727	118374727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12	368	512	0	ENST00000534358.1:c.8120G>A	p.Arg2707Gln	p.R2707Q	ENST00000534358	NM_005933.3	2707	cGg/cAg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562719	21562719	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	606	794	1	ENST00000382592.4:c.1200C>A	p.Cys400Ter	p.C400*	ENST00000382592	NM_014572.2	400	tgC/tgA																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162720	47162720	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12	349	487	0	ENST00000409792.3:c.3406G>T	p.Gly1136Ter	p.G1136*	ENST00000409792	NM_014159.6	1136	Gga/Tga																																																																															
ROS1	6098	MSKCC	GRCh37	6	117642554	117642554	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	523	751	0	ENST00000368508.3:c.5645G>A	p.Trp1882Ter	p.W1882*	ENST00000368508	NM_002944.2	1882	tGg/tAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518351	8518351	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	252	330	0	ENST00000356435.5:c.1040A>C	p.Asn347Thr	p.N347T	ENST00000356435		347	aAc/aCc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589168	67589168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	44	410	0	ENST00000274335.5:c.1156C>T	p.Arg386Ter	p.R386*	ENST00000274335		386	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0039608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	79	432	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0039608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	137	935	1	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424695	49424695	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0039608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	95	814	2	ENST00000301067.7:c.13652T>A	p.Leu4551Ter	p.L4551*	ENST00000301067	NM_003482.3	4551	tTg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578448	7578449	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0039608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	276	1053	0	ENST00000269305.4:c.481_482del	p.Ala161HisfsTer19	p.A161Hfs*19	ENST00000269305	NM_001126112.2	161	GCc/c																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10252723	10252723	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1140	85	921	0	ENST00000340748.4:c.3242A>G	p.Asn1081Ser	p.N1081S	ENST00000340748		1081	aAc/aGc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678751	52678751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	38	426	0	ENST00000394830.3:c.868C>A	p.His290Asn	p.H290N	ENST00000394830	NM_018313.4	290	Cat/Aat																																																																															
RASA1	5921	MSKCC	GRCh37	5	86667956	86667957	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	38	365	1	ENST00000274376.6:c.1721dup	p.Phe575IlefsTer8	p.F575Ifs*8	ENST00000274376	NM_002890.2	574	gca/gCca																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683755	162683755	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	52	528	0	ENST00000366898.1:c.214A>G	p.Arg72Gly	p.R72G	ENST00000366898	NM_004562.2	72	Aga/Gga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0039642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	40	404	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0039642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	97	878	2	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0039642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	24	405	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ATM	472	MSKCC	GRCh37	11	108205807	108205807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	35	383	2	ENST00000278616.4:c.8122G>A	p.Asp2708Asn	p.D2708N	ENST00000278616	NM_000051.3	2708	Gat/Aat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041007	47041007	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	126	896	0	ENST00000329236.7:c.1303G>T	p.Glu435Ter	p.E435*	ENST00000329236	NM_001204466.1	435	Gag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29679408	29679408	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	60	441	0	ENST00000358273.4:c.7591C>T	p.Gln2531Ter	p.Q2531*	ENST00000358273	NM_001042492.2	2531	Cag/Tag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645064	86645064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	13	322	1	ENST00000274376.6:c.1136C>T	p.Ser379Leu	p.S379L	ENST00000274376	NM_002890.2	379	tCa/tTa																																																																															
PPARG	5468	MSKCC	GRCh37	3	12447499	12447499	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	88	625	0	ENST00000287820.6:c.738G>T	p.Leu246Phe	p.L246F	ENST00000287820	NM_015869.4	246	ttG/ttT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	73	371	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578519	7578520	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGTTGGCAA			P-0039646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	114	924	0	ENST00000269305.4:c.402_410dup	p.Cys135_Leu137dup	p.C135_L137dup	ENST00000269305	NM_001126112.2	135	ctg/ctTTGCCAACTg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39617739	39617739	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	18	365	0	ENST00000262039.4:c.1923A>T	p.Leu641Phe	p.L641F	ENST00000262039	NM_002647.2	641	ttA/ttT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0039651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	385	444	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923703	39923703	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	182	891	0	ENST00000378444.4:c.3388C>A	p.Leu1130Ile	p.L1130I	ENST00000378444	NM_001123385.1	1130	Ctc/Atc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99491840	99491840	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	207	556	2	ENST00000268035.6:c.3625G>T	p.Ala1209Ser	p.A1209S	ENST00000268035	NM_000875.3	1209	Gcc/Tcc																																																																															
NF1	4763	MSKCC	GRCh37	17	29508461	29508461	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	136	388	0	ENST00000358273.4:c.608C>G	p.Ala203Gly	p.A203G	ENST00000358273	NM_001042492.2	203	gCc/gGc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618832	37618832	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	263	656	0	ENST00000447079.4:c.508A>T	p.Ser170Cys	p.S170C	ENST00000447079	NM_015083.1	170	Agc/Tgc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761399	59761399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	104	479	0	ENST00000259008.2:c.3008C>T	p.Ser1003Leu	p.S1003L	ENST00000259008	NM_032043.2	1003	tCa/tTa																																																																															
ALK	238	MSKCC	GRCh37	2	29606604	29606604	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	221	395	0	ENST00000389048.3:c.1276A>T	p.Ser426Cys	p.S426C	ENST00000389048	NM_004304.4	426	Agt/Tgt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715735	30715735	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs144766594		P-0039651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	199	328	2	ENST00000359013.4:c.1468G>T	p.Gly490Ter	p.G490*	ENST00000359013	NM_001024847.2	490	Gga/Tga																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231287	98231287	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	260	795	1	ENST00000331920.6:c.1996A>T	p.Thr666Ser	p.T666S	ENST00000331920	NM_000264.3	666	Acg/Tcg																																																																															
XIAP	331	MSKCC	GRCh37	X	123025086	123025086	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0039651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	162	461	0	ENST00000355640.3:c.978-2A>T		p.X326_splice	ENST00000355640		326																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27106089	27106090	+	stop_gained	Nonsense_Mutation	DNP	TG	TG	AT			P-0037447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	89	406	2	ENST00000324856.7:c.5700_5701delinsAT	p.Asp1900_Gly1901delinsGluTer	p.D1900_G1901delinsE*	ENST00000324856	NM_006015.4	1900	gaTGga/gaATga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0037447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	299	417	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633486	3633486	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs181782315		P-0037447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	318	576	2	ENST00000294008.3:c.4765C>T	p.Arg1589Cys	p.R1589C	ENST00000294008	NM_032444.2	1589	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0037447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	317	478	5	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223251	5223251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	142	391	0	ENST00000357368.4:c.2552G>A	p.Arg851His	p.R851H	ENST00000357368	NM_002850.3	851	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0037447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	58	252	2	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0037447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	55	197	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	111	515	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0037712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	31	229	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0037712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	145	466	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374935	45374935	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	149	477	0	ENST00000262160.6:c.908C>G	p.Thr303Arg	p.T303R	ENST00000262160	NM_005901.5	303	aCa/aGa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249460	153249460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	151	481	1	ENST00000281708.4:c.1318G>A	p.Asp440Asn	p.D440N	ENST00000281708	NM_033632.3	440	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112174814	112174814	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	25	229	0	ENST00000257430.4:c.3523C>T	p.Gln1175Ter	p.Q1175*	ENST00000257430	NM_000038.5	1175	Cag/Tag																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793269	33793269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	53	109	0	ENST00000498907.2:c.52C>T	p.His18Tyr	p.H18Y	ENST00000498907	NM_004364.3	18	Cac/Tac																																																																															
MET	4233	MSKCC	GRCh37	7	116412022	116412022	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	221	633	1	ENST00000397752.3:c.3007T>A	p.Tyr1003Asn	p.Y1003N	ENST00000397752	NM_000245.2	1003	Tac/Aac																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72897386	72897386	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	30	270	0	ENST00000325599.8:c.106T>G	p.Ser36Ala	p.S36A	ENST00000325599	NM_018130.2	36	Tct/Gct																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	167	665	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	75	318	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350862	89350862	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	170	833	0	ENST00000301030.4:c.2088del	p.Glu697LysfsTer7	p.E697Kfs*7	ENST00000301030	NM_001256183.1	696	aaA/aa																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	209	771	10	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258485	16258485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	138	617	0	ENST00000375759.3:c.5750G>A	p.Arg1917His	p.R1917H	ENST00000375759	NM_015001.2	1917	cGc/cAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	233	424	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780711	9780711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	51	609	0	ENST00000377346.4:c.1513G>A	p.Glu505Lys	p.E505K	ENST00000377346	NM_005026.3	505	Gag/Aag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435128	110435129	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs772322568		P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	146	622	0	ENST00000375856.3:c.3272dup	p.Lys1092GlufsTer233	p.K1092Efs*233	ENST00000375856	NM_003749.2	1091	ccg/ccCg																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	113	423	1	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846336	156846336	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781209572		P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	185	592	1	ENST00000524377.1:c.1777C>T	p.Arg593Trp	p.R593W	ENST00000524377	NM_002529.3	593	Cgg/Tgg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53224538	53224538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	194	337	1	ENST00000375401.3:c.3175C>T	p.Arg1059Trp	p.R1059W	ENST00000375401	NM_004187.3	1059	Cgg/Tgg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974899	15974899	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	102	480	0	ENST00000268712.3:c.3976C>T	p.Arg1326Ter	p.R1326*	ENST00000268712	NM_006311.3	1326	Cga/Tga																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	130	600	0	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
ATRX	546	MSKCC	GRCh37	X	76812945	76812947	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	89	275	2	ENST00000373344.5:c.6674_6676del	p.Lys2225del	p.K2225del	ENST00000373344	NM_000489.3	2225	aAGAgg/agg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155325	185155325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	171	557	0	ENST00000265026.3:c.566C>T	p.Ala189Val	p.A189V	ENST00000265026	NM_004721.4	189	gCg/gTg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384650	31384651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756395138		P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	156	637	1	ENST00000328111.2:c.1359dup	p.Leu454AlafsTer11	p.L454Afs*11	ENST00000328111	NM_006892.3	451	gag/gaGg																																																																															
ACVR1	90	MSKCC	GRCh37	2	158622516	158622516	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs387906589		P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	115	517	0	ENST00000263640.3:c.983G>T	p.Gly328Val	p.G328V	ENST00000263640	NM_001105.4	328	gGg/gTg																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2494324	2494324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143033733		P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	170	645	0	ENST00000355716.4:c.715G>A	p.Val239Ile	p.V239I	ENST00000355716	NM_003820.2	239	Gtc/Atc																																																																															
BLM	641	MSKCC	GRCh37	15	91347446	91347446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	133	412	0	ENST00000355112.3:c.3608C>T	p.Ala1203Val	p.A1203V	ENST00000355112	NM_000057.2	1203	gCg/gTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	130	609	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	73	712	0	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255141	16255142	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	124	544	1	ENST00000375759.3:c.2417_2418dupGA	p.Arg807AspfsTer3	p.R807Dfs*3	ENST00000375759	NM_015001.2	802	-/GA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420204	49420204	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	194	648	0	ENST00000301067.7:c.15545del	p.Gly5182AlafsTer61	p.G5182Afs*61	ENST00000301067	NM_003482.3	5182	gGc/gc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261291	16261292	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	156	583	0	ENST00000375759.3:c.8558dup	p.Ser2854ValfsTer6	p.S2854Vfs*6	ENST00000375759	NM_015001.2	2852	-/A																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156834203	156834203	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	173	713	0	ENST00000524377.1:c.274delG	p.Glu92SerfsTer2	p.E92Sfs*2	ENST00000524377	NM_002529.3	90	ctG/ct																																																																															
GATA3	2625	MSKCC	GRCh37	10	8105983	8105983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	132	455	0	ENST00000346208.3:c.803C>A	p.Ala268Glu	p.A268E	ENST00000346208		268	gCa/gAa																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125497657	125497657	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	96	441	0	ENST00000428830.2:c.221G>T	p.Arg74Met	p.R74M	ENST00000428830	NM_001114121.2	74	aGg/aTg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81606151	81606151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	135	539	0	ENST00000298171.2:c.821G>A	p.Arg274Gln	p.R274Q	ENST00000298171	NM_000369.2	274	cGg/cAg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813705	50813705	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	83	646	0	ENST00000398568.2:c.1259T>C	p.Leu420Pro	p.L420P	ENST00000398568	NM_001042412.1	420	cTc/cCc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829272	72829272	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	189	717	0	ENST00000268489.5:c.7309del	p.Ser2437ValfsTer91	p.S2437Vfs*91	ENST00000268489	NM_006885.3	2437	Agt/gt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10286250	10286250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	185	594	0	ENST00000340748.4:c.566C>T	p.Ser189Leu	p.S189L	ENST00000340748		189	tCg/tTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224692	36224692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	203	763	0	ENST00000222270.7:c.7078C>T	p.Pro2360Ser	p.P2360S	ENST00000222270	NM_014727.1	2360	Cca/Tca																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170011257	170011257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	126	540	1	ENST00000295797.4:c.1378G>A	p.Asp460Asn	p.D460N	ENST00000295797	NM_002740.5	460	Gat/Aat																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143130126	143130126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	108	507	0	ENST00000262992.4:c.890G>A	p.Arg297Gln	p.R297Q	ENST00000262992	NM_001101669.1	297	cGa/cAa																																																																															
DAXX	1616	MSKCC	GRCh37	6	33286937	33286937	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	216	746	1	ENST00000374542.5:c.2000C>A	p.Pro667His	p.P667H	ENST00000374542	NM_001141970.1	667	cCc/cAc																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64290026	64290026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	114	470	1	ENST00000370651.3:c.469C>T	p.Arg157Trp	p.R157W	ENST00000370651	NM_003463.4	157	Cgg/Tgg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137309085	137309085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777558913		P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	214	777	2	ENST00000481739.1:c.692C>T	p.Pro231Leu	p.P231L	ENST00000481739	NM_002957.4	231	cCg/cTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70357413	70357413	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	140	339	0	ENST00000374080.3:c.5754T>G	p.Ser1918Arg	p.S1918R	ENST00000374080		1918	agT/agG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	292	484	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435125	18435125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	144	498	0	ENST00000266497.5:c.110G>T	p.Ser37Ile	p.S37I	ENST00000266497		37	aGt/aTt																																																																															
ATM	472	MSKCC	GRCh37	11	108180981	108180981	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	202	399	0	ENST00000278616.4:c.5857A>G	p.Thr1953Ala	p.T1953A	ENST00000278616	NM_000051.3	1953	Aca/Gca																																																																															
MGA	23269	MSKCC	GRCh37	15	41988873	41988882	+	frameshift_variant	Frame_Shift_Del	DEL	TATATCTGAC	TATATCTGAC	-			P-0039352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	194	594	0	ENST00000219905.7:c.1665_1674del	p.Asp555GlufsTer42	p.D555Efs*42	ENST00000219905	NM_001164273.1	555	gaTATATCTGAC/ga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2122357	2122357	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	494	614	1	ENST00000219476.3:c.2213G>T	p.Cys738Phe	p.C738F	ENST00000219476	NM_000548.3	738	tGc/tTc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143235875	143235875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	161	398	0	ENST00000262992.4:c.413C>T	p.Pro138Leu	p.P138L	ENST00000262992	NM_001101669.1	138	cCa/cTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341776	8341776	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	589	664	1	ENST00000356435.5:c.4864G>T	p.Ala1622Ser	p.A1622S	ENST00000356435		1622	Gct/Tct																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028875	47028875	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0039352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	425	551	0	ENST00000329236.7:c.179C>G	p.Ser60Ter	p.S60*	ENST00000329236	NM_001204466.1	60	tCa/tGa																																																																															
ATRX	546	MSKCC	GRCh37	X	76944337	76944337	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	267	572	1	ENST00000373344.5:c.568C>A	p.Pro190Thr	p.P190T	ENST00000373344	NM_000489.3	190	Cct/Act																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857977	9857977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	103	676	0	ENST00000330684.3:c.3424C>T	p.Pro1142Ser	p.P1142S	ENST00000330684	NM_001134407.1	1142	Ccc/Tcc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65323383	65323384	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0039354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	74	599	0	ENST00000342505.4:c.1413_1414del	p.Phe472Ter	p.F472*	ENST00000342505	NM_002227.2	471	gaCTtt/gatt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468263	50468263	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	93	640	0	ENST00000331340.3:c.1498C>T	p.Gln500Ter	p.Q500*	ENST00000331340	NM_006060.4	500	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0039355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1458	95	669	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
MED12	9968	MSKCC	GRCh37	X	70347265	70347265	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	67	629	0	ENST00000374080.3:c.2929G>C	p.Asp977His	p.D977H	ENST00000374080		977	Gat/Cat																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551681	150551681	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	64	471	0	ENST00000369026.2:c.326A>T	p.Glu109Val	p.E109V	ENST00000369026	NM_021960.4	109	gAg/gTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70333573	70333573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	43	539	0	ENST00000373644.4:c.1478C>T	p.Ala493Val	p.A493V	ENST00000373644	NM_030625.2	493	gCt/gTt																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872514	35872514	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	75	456	0	ENST00000216797.5:c.389T>A	p.Leu130His	p.L130H	ENST00000216797	NM_020529.2	130	cTt/cAt																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7982773	7982773	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	77	676	0	ENST00000319144.4:c.1012G>C	p.Ala338Pro	p.A338P	ENST00000319144	NM_001139.2	338	Gcc/Ccc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133851	55133851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	50	429	1	ENST00000257290.5:c.1064C>T	p.Thr355Ile	p.T355I	ENST00000257290	NM_006206.4	355	aCt/aTt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874559	35874559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	48	497	2	ENST00000303115.3:c.715G>T	p.Asp239Tyr	p.D239Y	ENST00000303115	NM_002185.3	239	Gat/Tat																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188395	32188395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	78	529	0	ENST00000375023.3:c.946G>T	p.Asp316Tyr	p.D316Y	ENST00000375023	NM_004557.3	316	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	114	472	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0039356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	158	695	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231357	5231357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	76	642	0	ENST00000357368.4:c.2119G>A	p.Glu707Lys	p.E707K	ENST00000357368	NM_002850.3	707	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0039461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	56	312	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	76	609	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0039461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	99	778	0	ENST00000304494.5:c.457+1G>A		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																																
ERCC2	2068	MSKCC	GRCh37	19	45855469	45855469	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	87	613	0	ENST00000391945.4:c.2188C>T	p.Arg730Trp	p.R730W	ENST00000391945	NM_000400.3	730	Cgg/Tgg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117706985	117706985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	54	495	0	ENST00000368508.3:c.2165C>T	p.Thr722Met	p.T722M	ENST00000368508	NM_002944.2	722	aCg/aTg																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650753	48650753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	48	679	0	ENST00000376670.3:c.622G>A	p.Gly208Arg	p.G208R	ENST00000376670	NM_002049.3	208	Gga/Aga																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864884	117864884	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	40	367	0	ENST00000297338.2:c.1225G>T	p.Glu409Ter	p.E409*	ENST00000297338	NM_006265.2	409	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	133	473	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73336068	73336068	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	59	232	0	ENST00000377767.4:c.2335A>T	p.Ile779Phe	p.I779F	ENST00000377767	NM_014953.3	779	Att/Ttt																																																																															
TET2	54790	MSKCC	GRCh37	4	106162529	106162529	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	111	308	0	ENST00000380013.4:c.3443A>G	p.Tyr1148Cys	p.Y1148C	ENST00000380013	NM_001127208.2	1148	tAt/tGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097763	8097763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	332	802	0	ENST00000346208.3:c.145G>A	p.Val49Met	p.V49M	ENST00000346208		49	Gtg/Atg																																																																															
MAX	4149	MSKCC	GRCh37	14	65543382	65543382	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0039647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	218	590	0	ENST00000358664.4:c.296-1G>C		p.X99_splice	ENST00000358664	NM_002382.4	99																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157100526	157100526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	23	162	0	ENST00000346085.5:c.1463C>T	p.Pro488Leu	p.P488L	ENST00000346085	NM_020732.3	488	cCg/cTg																																																																															
RET	5979	MSKCC	GRCh37	10	43598069	43598069	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	49	427	0	ENST00000355710.3:c.617T>A	p.Leu206His	p.L206H	ENST00000355710	NM_020975.4	206	cTc/cAc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149452934	149452934	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	48	449	0	ENST00000286301.3:c.1012T>C	p.Tyr338His	p.Y338H	ENST00000286301	NM_005211.3	338	Tac/Cac																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707605	176707605	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	58	407	0	ENST00000439151.2:c.5662G>C	p.Asp1888His	p.D1888H	ENST00000439151	NM_022455.4	1888	Gac/Cac																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32181030	32181030	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0039692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	52	393	0	ENST00000375023.3:c.2321-1G>A		p.X774_splice	ENST00000375023	NM_004557.3	774																																																																																
NBN	4683	MSKCC	GRCh37	8	90967595	90967595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	48	289	0	ENST00000265433.3:c.1313G>T	p.Ser438Ile	p.S438I	ENST00000265433	NM_002485.4	438	aGt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578484	7578487	+	protein_altering_variant	In_Frame_Del	DEL	GAAT	GAAT	A			P-0039692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	178	589	0	ENST00000269305.4:c.443_446delinsT	p.Asp148_Ser149delinsVal	p.D148_S149delinsV	ENST00000269305	NM_001126112.2	148	gATTCc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	64	317	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0005937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	100	527	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603023	48603023	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	69	258	2	ENST00000342988.3:c.1324C>T	p.Gln442Ter	p.Q442*	ENST00000342988	NM_005359.5	442	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106364	27106364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	68	393	0	ENST00000324856.7:c.5975C>T	p.Ser1992Leu	p.S1992L	ENST00000324856	NM_006015.4	1992	tCa/tTa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18443940	18443940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	41	279	0	ENST00000266497.5:c.913C>T	p.Pro305Ser	p.P305S	ENST00000266497		305	Cca/Tca																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562270	95562270	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	125	485	0	ENST00000343455.3:c.4987A>G	p.Ile1663Val	p.I1663V	ENST00000343455	NM_177438.2	1663	Ata/Gta																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20150381	20150381	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	36	301	0	ENST00000379607.5:c.256G>A	p.Asp86Asn	p.D86N	ENST00000379607	NM_001412.3	86	Gat/Aat																																																																															
BBC3	27113	MSKCC	GRCh37	19	47729821	47729856	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CCGCCGCTCGTACTGTGCGTTGAGGTCGTCCGCCAT	CCGCCGCTCGTACTGTGCGTTGAGGTCGTCCGCCAT	-			P-0005937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	63	456	0	ENST00000449228.1:c.533_568del	p.Asp178_Ala189del	p.D178_A189del	ENST00000449228	NM_001127240.2	178	gATGGCGGACGACCTCAACGCACAGTACGAGCGGCGGag/gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578226	7578226	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1464727668		P-0006286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	58	261	0	ENST00000269305.4:c.623A>T	p.Asp208Val	p.D208V	ENST00000269305	NM_001126112.2	208	gAc/gTc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148512029	148512029	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	24	137	0	ENST00000320356.2:c.1649A>C	p.Lys550Thr	p.K550T	ENST00000320356	NM_004456.4	550	aAg/aCg																																																																															
STK11	6794	MSKCC	GRCh37	19	1219401	1219401	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	49	229	0	ENST00000326873.7:c.454del	p.Gln152ArgfsTer9	p.Q152Rfs*9	ENST00000326873	NM_000455.4	151	tgC/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0006819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	127	605	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0006819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	88	435	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861838	57861838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	182	849	5	ENST00000228682.2:c.1139G>A	p.Arg380Gln	p.R380Q	ENST00000228682	NM_005269.2	380	cGa/cAa																																																																															
SMO	6608	MSKCC	GRCh37	7	128852264	128852264	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	101	525	0	ENST00000249373.3:c.2336A>T	p.Glu779Val	p.E779V	ENST00000249373	NM_005631.4	779	gAa/gTa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710706	114710706	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0006819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	208	607	0	ENST00000543371.1:c.189+2T>C		p.X63_splice	ENST00000543371	NM_001198531.1	63																																																																																
TBX3	6926	MSKCC	GRCh37	12	115117368	115117368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	73	694	0	ENST00000257566.3:c.806G>A	p.Arg269Gln	p.R269Q	ENST00000257566	NM_016569.3	269	cGg/cAg																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14629021	14629021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	298	626	0	ENST00000254322.2:c.141G>C	p.Glu47Asp	p.E47D	ENST00000254322	NM_006145.1	47	gaG/gaC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	105	217	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	184	362	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	166	334	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99163051	99163051	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	238	283	0	ENST00000074304.5:c.1057C>A	p.Gln353Lys	p.Q353K	ENST00000074304	NM_001134224.1	353	Cag/Aag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828538	72828538	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	250	630	0	ENST00000268489.5:c.8043G>C	p.Lys2681Asn	p.K2681N	ENST00000268489	NM_006885.3	2681	aaG/aaC																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061249	38061249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	217	570	0	ENST00000250448.2:c.740A>G	p.His247Arg	p.H247R	ENST00000250448	NM_004496.3	247	cAc/cGc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59937172	59937172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	91	481	0	ENST00000259008.2:c.190C>A	p.Gln64Lys	p.Q64K	ENST00000259008	NM_032043.2	64	Caa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112178891	112178903	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAGTCCTTCTA	GAAAGTCCTTCTA	-			P-0007005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	47	459	0	ENST00000257430.4:c.7602_7614del	p.Glu2534AspfsTer24	p.E2534Dfs*24	ENST00000257430	NM_000038.5	2534	GAAAGTCCTTCTAga/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	17	278	0	ENST00000269305.4:c.526T>G	p.Cys176Gly	p.C176G	ENST00000269305	NM_001126112.2	176	Tgc/Ggc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	32	1347	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
TERT	7015	MSKCC	GRCh37	5	1260675	1260675	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	50	1016	0	ENST00000310581.5:c.2884C>G	p.Arg962Gly	p.R962G	ENST00000310581	NM_198253.2	962	Cgc/Ggc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	259	359	0	ENST00000269305.4:c.742C>G	p.Arg248Gly	p.R248G	ENST00000269305	NM_001126112.2	248	Cgg/Ggg																																																																															
MDM4	4194	MSKCC	GRCh37	1	204513670	204513670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	270	217	0	ENST00000367182.3:c.680G>A	p.Gly227Asp	p.G227D	ENST00000367182	NM_001278516.1	227	gGt/gAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812314	212812314	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	278	318	0	ENST00000342788.4:c.262T>A	p.Leu88Ile	p.L88I	ENST00000342788	NM_005235.2	88	Tta/Ata																																																																															
ATR	545	MSKCC	GRCh37	3	142183982	142183982	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	352	425	0	ENST00000350721.4:c.6998G>T	p.Arg2333Ile	p.R2333I	ENST00000350721	NM_001184.3	2333	aGa/aTa																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020931	26020931	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1905	632	1278	0	ENST00000357647.3:c.214G>T	p.Val72Leu	p.V72L	ENST00000357647	NM_003529.2	72	Gtg/Ttg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845187	151845187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	314	414	0	ENST00000262189.6:c.13825C>T	p.Pro4609Ser	p.P4609S	ENST00000262189	NM_170606.2	4609	Cca/Tca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151960212	151960212	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	28	142	0	ENST00000262189.6:c.1188A>T	p.Gln396His	p.Q396H	ENST00000262189	NM_170606.2	396	caA/caT																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943717	17943717	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	379	271	0	ENST00000458235.1:c.2372C>G	p.Pro791Arg	p.P791R	ENST00000458235	NM_000215.3	791	cCc/cGc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39725893	39725893	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	287	297	0	ENST00000361337.2:c.764A>C	p.Glu255Ala	p.E255A	ENST00000361337	NM_003286.2	255	gAa/gCa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535453	66535453	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	70	135	0	ENST00000273854.3:c.8delG	p.Gly3AlafsTer59	p.G3Afs*59	ENST00000273854	NM_004439.5	3	gGc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0008583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	302	524	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112170788	112170788	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	137	460	1	ENST00000257430.4:c.1886del	p.Leu629Ter	p.L629*	ENST00000257430	NM_000038.5	628	acT/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G	rs587782272		P-0008970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	403	420	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
TSC1	7248	MSKCC	GRCh37	9	135797301	135797301	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	173	383	0	ENST00000298552.3:c.568del	p.Arg190AlafsTer20	p.R190Afs*20	ENST00000298552	NM_001162426.1	190	Cgc/gc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37035095	37035095	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	119	310	0	ENST00000231790.2:c.57C>G	p.Ile19Met	p.I19M	ENST00000231790	NM_000249.3	19	atC/atG																																																																															
CBFB	865	MSKCC	GRCh37	16	67100697	67100697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	370	400	0	ENST00000412916.2:c.395C>T	p.Ala132Val	p.A132V	ENST00000412916		132	gCc/gTc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961825	15961826	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	471	551	0	ENST00000268712.3:c.5969dup	p.Thr1991AspfsTer8	p.T1991Dfs*8	ENST00000268712	NM_006311.3	1990	cag/caAg																																																																															
CDH1	999	MSKCC	GRCh37	16	68847346	68847365	+	protein_altering_variant	In_Frame_Del	DEL	TTGTCGTCACCACAAATCCA	TTGTCGTCACCACAAATCCA	CG			P-0008970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	388	513	0	ENST00000261769.5:c.1268_1287delinsCG	p.Phe423_Pro429delinsSer	p.F423_P429delinsS	ENST00000261769	NM_004360.3	423	tTTGTCGTCACCACAAATCCA/tCG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0010537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	416	466	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11297992	11297992	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	446	456	0	ENST00000361445.4:c.2116G>C	p.Glu706Gln	p.E706Q	ENST00000361445	NM_004958.3	706	Gag/Cag																																																																															
RB1	5925	MSKCC	GRCh37	13	48919328	48919444	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGGAAAGGTAAAGTAAACATTTTATTAGGTTTACACTCTGATTTTTTATGTCATTGTTCACAATTAGATTCTGGGAATTATTTAACACATTTAGTAAAGTTAGTAAGTATTAATTC	TTGGAAAGGTAAAGTAAACATTTTATTAGGTTTACACTCTGATTTTTTATGTCATTGTTCACAATTAGATTCTGGGAATTATTTAACACATTTAGTAAAGTTAGTAAGTATTAATTC	-			P-0010537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	84	404	0	ENST00000267163.4:c.495_500+111del		p.X165_splice	ENST00000267163	NM_000321.2	165																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	772	403	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0011108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	722	523	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371683	55371683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	96	463	0	ENST00000297316.4:c.373C>T	p.Arg125Cys	p.R125C	ENST00000297316	NM_022454.3	125	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112116494	112116494	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0011108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	270	311	0	ENST00000257430.4:c.539T>G	p.Leu180Ter	p.L180*	ENST00000257430	NM_000038.5	180	tTa/tGa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459462	50459462	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	568	364	0	ENST00000331340.3:c.751G>T	p.Glu251Ter	p.E251*	ENST00000331340	NM_006060.4	251	Gaa/Taa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342789	87342789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	473	452	0	ENST00000277120.3:c.1074C>G	p.Asp358Glu	p.D358E	ENST00000277120		358	gaC/gaG																																																																															
HRAS	3265	MSKCC	GRCh37	11	532715	532715	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	775	683	0	ENST00000311189.7:c.491G>A	p.Arg164Gln	p.R164Q	ENST00000311189		164	cGg/cAg																																																																															
ATM	472	MSKCC	GRCh37	11	108143448	108143448	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0011108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	303	624	0	ENST00000278616.4:c.3154-1G>A		p.X1052_splice	ENST00000278616	NM_000051.3	1052																																																																																
ATM	472	MSKCC	GRCh37	11	108163500	108163500	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	230	483	0	ENST00000278616.4:c.4591C>T	p.Gln1531Ter	p.Q1531*	ENST00000278616	NM_000051.3	1531	Cag/Tag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0011400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	119	192	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0011400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1126	295	570	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	189	356	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0011400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1131	197	347	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120668	115120668	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1483	272	556	3	ENST00000257566.3:c.338G>A	p.Trp113Ter	p.W113*	ENST00000257566	NM_016569.3	113	tGg/tAg																																																																															
BARD1	580	MSKCC	GRCh37	2	215674175	215674175	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs71579841		P-0011400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	181	393	1	ENST00000260947.4:c.119C>T	p.Ala40Val	p.A40V	ENST00000260947	NM_000465.2	40	gCg/gTg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940889	49940889	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144338909		P-0011400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1412	222	657	0	ENST00000296474.3:c.154G>A	p.Gly52Arg	p.G52R	ENST00000296474	NM_002447.2	52	Gga/Aga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878785	151878785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	174	405	1	ENST00000262189.6:c.6160C>T	p.Gln2054Ter	p.Q2054*	ENST00000262189	NM_170606.2	2054	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717741	89717741	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	128	215	2	ENST00000371953.3:c.766G>T	p.Glu256Ter	p.E256*	ENST00000371953	NM_000314.4	256	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416554	49416554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	181	360	0	ENST00000301067.7:c.16157C>T	p.Ser5386Phe	p.S5386F	ENST00000301067	NM_003482.3	5386	tCt/tTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832025	72832025	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0011400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1341	301	658	0	ENST00000268489.5:c.4556C>G	p.Ser1519Ter	p.S1519*	ENST00000268489	NM_006885.3	1519	tCa/tGa																																																																															
IRF4	3662	MSKCC	GRCh37	6	393216	393216	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	99	498	0	ENST00000380956.4:c.64G>C	p.Gly22Arg	p.G22R	ENST00000380956	NM_001195286.1	22	Ggg/Cgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0011537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			38	469	315	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174379	11174379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	511	315	0	ENST00000361445.4:c.7296G>A	p.Met2432Ile	p.M2432I	ENST00000361445	NM_004958.3	2432	atG/atA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412187	63412187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	750	322	1	ENST00000330258.3:c.980G>A	p.Gly327Asp	p.G327D	ENST00000330258	NM_152424.3	327	gGt/gAt																																																																															
RB1	5925	MSKCC	GRCh37	13	49039133	49039134	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GA	GA	CC			P-0011537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			27	168	178	0	ENST00000267163.4:c.2212-1_2212delinsCC		p.X738_splice	ENST00000267163	NM_000321.2	738																																																																																
TP53	7157	MSKCC	GRCh37	17	7577111	7577111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	730	568	0	ENST00000269305.4:c.827C>G	p.Ala276Gly	p.A276G	ENST00000269305	NM_001126112.2	276	gCc/gGc																																																																															
NF1	4763	MSKCC	GRCh37	17	29559779	29559779	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	595	473	0	ENST00000358273.4:c.3376C>T	p.Gln1126Ter	p.Q1126*	ENST00000358273	NM_001042492.2	1126	Caa/Taa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538378	9538378	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	322	378	0	ENST00000353224.5:c.1620G>C	p.Met540Ile	p.M540I	ENST00000353224	NM_177990.2	540	atG/atC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	405	539	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
GREM1	26585	MSKCC	GRCh37	15	33023055	33023055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	169	669	0	ENST00000300177.4:c.164C>T	p.Ser55Phe	p.S55F	ENST00000300177	NM_001191322.1	55	tCc/tTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600324	10600324	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	377	561	0	ENST00000171111.5:c.1531G>T	p.Gly511Cys	p.G511C	ENST00000171111	NM_203500.1	511	Ggc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092801	27092801	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	166	579	0	ENST00000324856.7:c.2822T>C	p.Ile941Thr	p.I941T	ENST00000324856	NM_006015.4	941	aTc/aCc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156834576	156834576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	168	653	1	ENST00000524377.1:c.344C>A	p.Pro115His	p.P115H	ENST00000524377	NM_002529.3	115	cCt/cAt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724530	162724530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	131	508	0	ENST00000367921.3:c.302G>T	p.Gly101Val	p.G101V	ENST00000367921	NM_006182.2	101	gGg/gTg																																																																															
ACVR1	90	MSKCC	GRCh37	2	158637113	158637113	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	428	681	0	ENST00000263640.3:c.68-1G>C		p.X23_splice	ENST00000263640	NM_001105.4	23																																																																																
SF3B1	23451	MSKCC	GRCh37	2	198265576	198265576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	192	686	1	ENST00000335508.6:c.2581G>T	p.Ala861Ser	p.A861S	ENST00000335508	NM_012433.2	861	Gcc/Tcc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940103	49940103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	547	802	0	ENST00000296474.3:c.940G>T	p.Gly314Cys	p.G314C	ENST00000296474	NM_002447.2	314	Ggc/Tgc																																																																															
PARK2	5071	MSKCC	GRCh37	6	163148700	163148700	+	start_lost	Translation_Start_Site	SNP	T	T	C	rs772786691		P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	373	618	0	ENST00000366898.1:c.1A>G	p.Met1?	p.M1?	ENST00000366898	NM_004562.2	1	Atg/Gtg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509208	106509208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	188	596	1	ENST00000359195.3:c.1202C>A	p.Pro401His	p.P401H	ENST00000359195	NM_002649.2	401	cCc/cAc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5044488	5044488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	354	536	3	ENST00000381652.3:c.436G>T	p.Asp146Tyr	p.D146Y	ENST00000381652	NM_004972.3	146	Gat/Tat																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126786	5126786	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	236	393	0	ENST00000381652.3:c.3394G>T	p.Gly1132Ter	p.G1132*	ENST00000381652	NM_004972.3	1132	Gga/Tga																																																																															
CD274	29126	MSKCC	GRCh37	9	5463076	5463076	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	197	320	0	ENST00000381577.3:c.637A>T	p.Arg213Ter	p.R213*	ENST00000381577	NM_014143.3	213	Aga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8331695	8331695	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	479	572	0	ENST00000356435.5:c.5421C>A	p.Asp1807Glu	p.D1807E	ENST00000356435		1807	gaC/gaA																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912159	114912159	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	304	927	0	ENST00000543371.1:c.1229A>T	p.His410Leu	p.H410L	ENST00000543371	NM_001198531.1	410	cAt/cTt																																																																															
WT1	7490	MSKCC	GRCh37	11	32414301	32414301	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	100	449	1	ENST00000332351.3:c.1250G>T	p.Gly417Val	p.G417V	ENST00000332351	NM_024426.4	417	gGt/gTt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610261	81610261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	147	478	0	ENST00000298171.2:c.1859C>A	p.Thr620Asn	p.T620N	ENST00000298171	NM_000369.2	620	aCc/aAc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66679734	66679734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	218	635	0	ENST00000307102.5:c.49G>T	p.Gly17Cys	p.G17C	ENST00000307102	NM_002755.3	17	Ggc/Tgc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370277	40370277	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	813	945	3	ENST00000293328.3:c.1061T>C	p.Leu354Pro	p.L354P	ENST00000293328	NM_012448.3	354	cTg/cCg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288499	15288499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	64	267	0	ENST00000263388.2:c.4240G>T	p.Gly1414Cys	p.G1414C	ENST00000263388	NM_000435.2	1414	Ggc/Tgc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024416	31024416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	395	579	0	ENST00000375687.4:c.3901G>A	p.Gly1301Arg	p.G1301R	ENST00000375687	NM_015338.5	1301	Ggg/Agg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714442	40714442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	230	492	0	ENST00000373198.4:c.3955C>A	p.Gln1319Lys	p.Q1319K	ENST00000373198	NM_133170.3	1319	Cag/Aag																																																																															
FH	2271	MSKCC	GRCh37	1	241675375	241675376	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1359	153	553	0	ENST00000366560.3:c.446_447del	p.Thr149LysfsTer6	p.T149Kfs*6	ENST00000366560	NM_000143.3	149	aCA/a																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2494633	2494633	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	161	590	0	ENST00000355716.4:c.773del	p.Leu258ArgfsTer44	p.L258Rfs*44	ENST00000355716	NM_003820.2	258	cTg/cg																																																																															
SYK	6850	MSKCC	GRCh37	9	93624488	93624489	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GA	GA	TT			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	206	412	0	ENST00000375746.1:c.579_580delinsTT	p.Ile194Phe	p.I194F	ENST00000375746	NM_001174167.1	193	ctGAtc/ctTTtc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0012995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	173	540	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061147	38061203	+	inframe_deletion	In_Frame_Del	DEL	CCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGG	CCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGG	-			P-0012995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	360	213	0	ENST00000250448.2:c.786_842del	p.Gln263_Gly281del	p.Q263_G281del	ENST00000250448	NM_004496.3	262	cgCCAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGa/cga																																																																															
PAX5	5079	MSKCC	GRCh37	9	36923408	36923408	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	193	652	0	ENST00000358127.4:c.854C>A	p.Thr285Asn	p.T285N	ENST00000358127	NM_001280556.1	285	aCc/aAc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135785971	135785971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	259	578	1	ENST00000298552.3:c.1250C>T	p.Thr417Ile	p.T417I	ENST00000298552	NM_001162426.1	417	aCa/aTa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	247	764	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																																																															
MTOR	2475	MSKCC	GRCh37	1	11199604	11199604	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	283	767	0	ENST00000361445.4:c.4984A>C	p.Lys1662Gln	p.K1662Q	ENST00000361445	NM_004958.3	1662	Aag/Cag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3808940	3808940	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	259	740	0	ENST00000262367.5:c.3284T>C	p.Met1095Thr	p.M1095T	ENST00000262367	NM_004380.2	1095	aTg/aCg																																																																															
NBN	4683	MSKCC	GRCh37	8	90958378	90958379	+	missense_variant	Missense_Mutation	DNP	TT	TT	AA			P-0013000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	450	508	0	ENST00000265433.3:c.2059_2060inv	p.Lys687Leu	p.K687L	ENST00000265433	NM_002485.4	687	AAa/TTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	213	487	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0013144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	397	684	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	614	728	0	ENST00000269305.4:c.857A>T	p.Glu286Val	p.E286V	ENST00000269305	NM_001126112.2	286	gAa/gTa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411366	63411366	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	589	421	2	ENST00000330258.3:c.1801C>T	p.Arg601Ter	p.R601*	ENST00000330258	NM_152424.3	601	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173429	112173429	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	161	669	0	ENST00000257430.4:c.2138C>A	p.Ser713Ter	p.S713*	ENST00000257430	NM_000038.5	713	tCa/tAa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518014	176518014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	322	794	0	ENST00000292408.4:c.512G>A	p.Arg171His	p.R171H	ENST00000292408	NM_213647.1	171	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	99	217	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501191		P-0013173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	299	528	2	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466522	120466522	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	312	671	0	ENST00000256646.2:c.4597G>T	p.Asp1533Tyr	p.D1533Y	ENST00000256646	NM_024408.3	1533	Gac/Tac																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460545	149460545	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	198	416	0	ENST00000286301.3:c.92T>G	p.Val31Gly	p.V31G	ENST00000286301	NM_005211.3	31	gTc/gGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151846122	151846122	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	210	477	0	ENST00000262189.6:c.12890A>T	p.Glu4297Val	p.E4297V	ENST00000262189	NM_170606.2	4297	gAg/gTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18650659	18650659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	143	289	0	ENST00000266497.5:c.2870G>A	p.Cys957Tyr	p.C957Y	ENST00000266497		957	tGt/tAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426510	49426510	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	311	752	0	ENST00000301067.7:c.11978A>T	p.Gln3993Leu	p.Q3993L	ENST00000301067	NM_003482.3	3993	cAg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432165	49432165	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	228	607	0	ENST00000301067.7:c.8974G>T	p.Glu2992Ter	p.E2992*	ENST00000301067	NM_003482.3	2992	Gag/Tag																																																																															
FLT1	2321	MSKCC	GRCh37	13	28971147	28971147	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	158	425	0	ENST00000282397.4:c.1610C>A	p.Ala537Asp	p.A537D	ENST00000282397	NM_002019.4	537	gCt/gAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831324	72831324	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	258	704	1	ENST00000268489.5:c.5257C>T	p.Gln1753Ter	p.Q1753*	ENST00000268489	NM_006885.3	1753	Caa/Taa																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855822	45855822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	257	535	0	ENST00000391945.4:c.1988G>A	p.Cys663Tyr	p.C663Y	ENST00000391945	NM_000400.3	663	tGt/tAt																																																																															
SRC	6714	MSKCC	GRCh37	20	36028676	36028676	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	220	499	0	ENST00000358208.4:c.1018G>T	p.Val340Phe	p.V340F	ENST00000358208		340	Gtc/Ttc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	228	510	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0013258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	157	420	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155870214	155870214	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	376	884	0	ENST00000368323.3:c.625T>C	p.Ser209Pro	p.S209P	ENST00000368323	NM_006912.5	209	Tca/Cca																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166755	32166755	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	226	533	0	ENST00000375023.3:c.4483T>C	p.Ser1495Pro	p.S1495P	ENST00000375023	NM_004557.3	1495	Tca/Cca																																																																															
PARK2	5071	MSKCC	GRCh37	6	161771189	161771189	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	235	648	1	ENST00000366898.1:c.1340G>A	p.Trp447Ter	p.W447*	ENST00000366898	NM_004562.2	447	tGg/tAg																																																																															
SMO	6608	MSKCC	GRCh37	7	128845518	128845518	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748004767		P-0013258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	284	809	0	ENST00000249373.3:c.815C>T	p.Ala272Val	p.A272V	ENST00000249373	NM_005631.4	272	gCg/gTg																																																																															
BLM	641	MSKCC	GRCh37	15	91308526	91308526	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0013258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	312	651	0	ENST00000355112.3:c.2075G>T	p.Gly692Val	p.G692V	ENST00000355112	NM_000057.2	692	gGa/gTa																																																																															
BLM	641	MSKCC	GRCh37	15	91354511	91354511	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	195	548	0	ENST00000355112.3:c.3951G>C	p.Glu1317Asp	p.E1317D	ENST00000355112	NM_000057.2	1317	gaG/gaC																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0013572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	394	1176	0	ENST00000269571.5:c.2331_2339dupGGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61711081	61711081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	165	678	1	ENST00000401558.2:c.2668G>A	p.Ala890Thr	p.A890T	ENST00000401558	NM_003400.3	890	Gca/Aca																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259178	36259178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	200	742	1	ENST00000300305.3:c.313C>T	p.His105Tyr	p.H105Y	ENST00000300305		105	Cac/Tac																																																																															
CDH1	999	MSKCC	GRCh37	16	68857532	68857532	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	C			P-0013572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	70	465	0	ENST00000261769.5:c.2164+3A>C		p.X722_splice	ENST00000261769	NM_004360.3	722																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48593391	48593391	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0013572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	145	505	0	ENST00000342988.3:c.1142T>A	p.Leu381Ter	p.L381*	ENST00000342988	NM_005359.5	381	tTg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0013625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	496	689	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164237	47164247	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTTTTTTAA	AGCTTTTTTAA	-			P-0013625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	116	468	0	ENST00000409792.3:c.1879_1889del	p.Leu627ArgfsTer2	p.L627Rfs*2	ENST00000409792	NM_014159.6	627	TTAAAAAAGCTa/a																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0013709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	2253	556	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0013709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	344	725	5	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2135246	2135246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	255	643	4	ENST00000219476.3:c.4585C>T	p.Arg1529Trp	p.R1529W	ENST00000219476	NM_000548.3	1529	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	495	612	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ALK	238	MSKCC	GRCh37	2	30143341	30143341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	242	394	0	ENST00000389048.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000389048	NM_004304.4	62	tCg/tTg																																																																															
AXL	558	MSKCC	GRCh37	19	41727920	41727920	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138094666		P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	257	603	2	ENST00000301178.4:c.545C>T	p.Thr182Met	p.T182M	ENST00000301178	NM_021913.4	182	aCg/aTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919979	50919979	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	359	414	0	ENST00000440232.2:c.3066G>T	p.Gln1022His	p.Q1022H	ENST00000440232	NM_002691.3	1022	caG/caT																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257887	16257887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	70	246	0	ENST00000375759.3:c.5152G>T	p.Gly1718Cys	p.G1718C	ENST00000375759	NM_015001.2	1718	Ggt/Tgt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716239	243716239	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	127	379	0	ENST00000263826.5:c.955G>C	p.Glu319Gln	p.E319Q	ENST00000263826	NM_005465.4	319	Gaa/Caa																																																																															
ATM	472	MSKCC	GRCh37	11	108121513	108121513	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	87	282	2	ENST00000278616.4:c.1321C>T	p.Gln441Ter	p.Q441*	ENST00000278616	NM_000051.3	441	Cag/Tag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	498251	498251	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	162	256	0	ENST00000399788.2:c.7G>T	p.Gly3Cys	p.G3C	ENST00000399788	NM_001042603.1	3	Ggc/Tgc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18466979	18466979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	432	469	0	ENST00000266497.5:c.1118C>A	p.Pro373Gln	p.P373Q	ENST00000266497		373	cCa/cAa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112611	115112611	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	246	286	0	ENST00000257566.3:c.1129G>T	p.Ala377Ser	p.A377S	ENST00000257566	NM_016569.3	377	Gcc/Tcc																																																																															
RB1	5925	MSKCC	GRCh37	13	49037865	49037865	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	299	369	1	ENST00000267163.4:c.2107-2A>T		p.X703_splice	ENST00000267163	NM_000321.2	703																																																																																
IGF1R	3480	MSKCC	GRCh37	15	99251282	99251282	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	109	487	1	ENST00000268035.6:c.586A>T	p.Thr196Ser	p.T196S	ENST00000268035	NM_000875.3	196	Acc/Tcc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029446	14029446	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	204	365	0	ENST00000311895.7:c.1657A>G	p.Ile553Val	p.I553V	ENST00000311895	NM_005236.2	553	Atc/Gtc																																																																															
CBFB	865	MSKCC	GRCh37	16	67100669	67100669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	814	581	1	ENST00000412916.2:c.367G>T	p.Gly123Cys	p.G123C	ENST00000412916		123	Ggc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829757	72829757	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	1101	872	0	ENST00000268489.5:c.6824T>A	p.Leu2275His	p.L2275H	ENST00000268489	NM_006885.3	2275	cTc/cAc																																																																															
RARA	5914	MSKCC	GRCh37	17	38510683	38510683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	175	512	0	ENST00000254066.5:c.937G>T	p.Ala313Ser	p.A313S	ENST00000254066	NM_000964.3	313	Gcc/Tcc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58677924	58677924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	214	290	0	ENST00000305921.3:c.149C>T	p.Pro50Leu	p.P50L	ENST00000305921	NM_003620.3	50	cCt/cTt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39584351	39584351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	326	369	2	ENST00000262039.4:c.1016G>T	p.Trp339Leu	p.W339L	ENST00000262039	NM_002647.2	339	tGg/tTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602329	10602329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	579	487	0	ENST00000171111.5:c.1249G>T	p.Gly417Trp	p.G417W	ENST00000171111	NM_203500.1	417	Ggg/Tgg																																																																															
CD79A	973	MSKCC	GRCh37	19	42383080	42383080	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	547	604	1	ENST00000221972.3:c.100T>A	p.Trp34Arg	p.W34R	ENST00000221972	NM_021601.3	34	Tgg/Agg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659952	227659952	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	276	700	1	ENST00000305123.5:c.3503G>T	p.Gly1168Val	p.G1168V	ENST00000305123	NM_005544.2	1168	gGg/gTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770585	40770585	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	394	479	0	ENST00000373198.4:c.2797A>C	p.Asn933His	p.N933H	ENST00000373198	NM_133170.3	933	Aat/Cat																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944469	40944470	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1211	489	632	1	ENST00000373198.4:c.2032_2033delinsAT	p.Pro678Ile	p.P678I	ENST00000373198	NM_133170.3	678	CCa/ATa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264792	46264792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1630	720	893	1	ENST00000371998.3:c.1662G>A	p.Met554Ile	p.M554I	ENST00000371998		554	atG/atA																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163617	47163617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	311	311	0	ENST00000409792.3:c.2509G>C	p.Asp837His	p.D837H	ENST00000409792	NM_014159.6	837	Gat/Cat																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55153655	55153655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	385	661	0	ENST00000257290.5:c.2621C>T	p.Thr874Ile	p.T874I	ENST00000257290	NM_006206.4	874	aCa/aTa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155207	55155207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	132	501	0	ENST00000257290.5:c.2806G>T	p.Glu936Ter	p.E936*	ENST00000257290	NM_006206.4	936	Gag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249427	153249427	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	194	577	1	ENST00000281708.4:c.1351G>T	p.Gly451Ter	p.G451*	ENST00000281708	NM_033632.3	451	Gga/Tga																																																																															
IL7R	3575	MSKCC	GRCh37	5	35860999	35860999	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	280	392	0	ENST00000303115.3:c.128A>G	p.Tyr43Cys	p.Y43C	ENST00000303115	NM_002185.3	43	tAt/tGt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149441079	149441079	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	163	761	0	ENST00000286301.3:c.1833del	p.Lys612ArgfsTer4	p.K612Rfs*4	ENST00000286301	NM_005211.3	611	ctG/ct																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449484	149449484	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	136	529	0	ENST00000286301.3:c.1462C>A	p.His488Asn	p.H488N	ENST00000286301	NM_005211.3	488	Cac/Aac																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520274	176520275	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	83	413	1	ENST00000292408.4:c.1193_1194delinsTT	p.Arg398Leu	p.R398L	ENST00000292408	NM_213647.1	398	cGG/cTT																																																																															
ESR1	2099	MSKCC	GRCh37	6	152201868	152201868	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	316	357	0	ENST00000206249.3:c.722G>T	p.Arg241Leu	p.R241L	ENST00000206249	NM_000125.3	241	cGg/cTg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382244	152382244	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	406	404	0	ENST00000206249.3:c.1354A>G	p.Ile452Val	p.I452V	ENST00000206249	NM_000125.3	452	Att/Gtt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683682	162683682	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	243	535	0	ENST00000366898.1:c.287A>T	p.Glu96Val	p.E96V	ENST00000366898	NM_004562.2	96	gAg/gTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81346629	81346629	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	517	493	1	ENST00000222390.5:c.1324A>T	p.Asn442Tyr	p.N442Y	ENST00000222390	NM_000601.4	442	Aat/Tat																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106515195	106515195	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	300	436	1	ENST00000359195.3:c.2338C>A	p.Pro780Thr	p.P780T	ENST00000359195	NM_002649.2	780	Ccc/Acc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523498	106523498	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	223	341	0	ENST00000359195.3:c.2650G>C	p.Asp884His	p.D884H	ENST00000359195	NM_002649.2	884	Gac/Cac																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38282168	38282168	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1415	79	442	0	ENST00000425967.3:c.888A>T	p.Lys296Asn	p.K296N	ENST00000425967	NM_001174067.1	296	aaA/aaT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341122	8341122	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	133	464	0	ENST00000356435.5:c.5094T>A	p.Asp1698Glu	p.D1698E	ENST00000356435		1698	gaT/gaA																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8517846	8517846	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	179	562	0	ENST00000356435.5:c.1543+2T>A		p.X515_splice	ENST00000356435		515																																																																																
BCOR	54880	MSKCC	GRCh37	X	39934060	39934060	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	315	671	0	ENST00000378444.4:c.539A>G	p.Asn180Ser	p.N180S	ENST00000378444	NM_001123385.1	180	aAc/aGc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934290	39934290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	370	750	0	ENST00000378444.4:c.309G>T	p.Glu103Asp	p.E103D	ENST00000378444	NM_001123385.1	103	gaG/gaT																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44879967	44879967	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	350	528	0	ENST00000377967.4:c.556A>T	p.Ser186Cys	p.S186C	ENST00000377967	NM_021140.2	186	Agt/Tgt																																																																															
ARAF	369	MSKCC	GRCh37	X	47422634	47422634	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	351	797	1	ENST00000377045.4:c.106C>G	p.Arg36Gly	p.R36G	ENST00000377045	NM_001654.4	36	Cgg/Ggg																																																																															
ARAF	369	MSKCC	GRCh37	X	47430351	47430351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	291	758	2	ENST00000377045.4:c.1626G>T	p.Met542Ile	p.M542I	ENST00000377045	NM_001654.4	542	atG/atT																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53250099	53250099	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	362	610	0	ENST00000375401.3:c.151-1G>T		p.X51_splice	ENST00000375401	NM_004187.3	51																																																																																
AMER1	139285	MSKCC	GRCh37	X	63410342	63410342	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	345	830	0	ENST00000330258.3:c.2825G>C	p.Arg942Pro	p.R942P	ENST00000330258	NM_152424.3	942	cGa/cCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0013881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	352	680	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916836	178916836	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1227	618	1545	0	ENST00000263967.3:c.223C>G	p.Gln75Glu	p.Q75E	ENST00000263967	NM_006218.2	75	Caa/Gaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0013881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	382	749	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
APC	324	MSKCC	GRCh37	5	112175636	112175636	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	390	837	0	ENST00000257430.4:c.4346del	p.Lys1449SerfsTer24	p.K1449Sfs*24	ENST00000257430	NM_000038.5	1449	Aag/ag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	217	481	0	ENST00000342988.3:c.1255G>A	p.Gly419Arg	p.G419R	ENST00000342988	NM_005359.5	419	Ggg/Agg																																																																															
APC	324	MSKCC	GRCh37	5	112164585	112164585	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	160	364	0	ENST00000257430.4:c.1659G>A	p.Trp553Ter	p.W553*	ENST00000257430	NM_000038.5	553	tgG/tgA																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992076	72992076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	392	1031	1	ENST00000268489.5:c.1969G>A	p.Gly657Ser	p.G657S	ENST00000268489	NM_006885.3	657	Ggc/Agc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931925	39931925	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	TTT			P-0013881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	320	792	0	ENST00000378444.4:c.2674delinsAAA	p.Leu892LysfsTer2	p.L892Kfs*2	ENST00000378444	NM_001123385.1	892	Cta/AAAta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	55	995	1	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	85	1064	0	ENST00000244661.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000244661	NM_003537.3	106	Gag/Cag																																																																															
EP300	2033	MSKCC	GRCh37	22	41572904	41572904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	82	498	1	ENST00000263253.7:c.5189C>T	p.Ser1730Phe	p.S1730F	ENST00000263253	NM_001429.3	1730	tCt/tTt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2202742	2202742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	168	717	0	ENST00000398665.3:c.751C>T	p.His251Tyr	p.H251Y	ENST00000398665	NM_032482.2	251	Cac/Tac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276266	15276266	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	88	531	0	ENST00000263388.2:c.5728C>G	p.Leu1910Val	p.L1910V	ENST00000263388	NM_000435.2	1910	Ctg/Gtg																																																																															
PIM1	5292	MSKCC	GRCh37	6	37141805	37141805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	58	467	0	ENST00000373509.5:c.880C>T	p.Leu294Phe	p.L294F	ENST00000373509	NM_002648.3	294	Ctc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0014128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	478	503	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380282	25380282	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	445	498	0	ENST00000256078.4:c.176C>G	p.Ala59Gly	p.A59G	ENST00000256078	NM_033360.2	59	gCa/gGa																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125514046	125514046	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	403	730	0	ENST00000428830.2:c.984G>T	p.Trp328Cys	p.W328C	ENST00000428830	NM_001114121.2	328	tgG/tgT																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222389	2222389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			60	112	252	0	ENST00000398665.3:c.3221del	p.Asp1074AlafsTer26	p.D1074Afs*26	ENST00000398665	NM_032482.2	1074	gAc/gc																																																																															
ALK	238	MSKCC	GRCh37	2	29446364	29446364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	467	826	2	ENST00000389048.3:c.3203C>A	p.Ala1068Asp	p.A1068D	ENST00000389048	NM_004304.4	1068	gCc/gAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41400110	41400110	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	353	450	0	ENST00000373198.4:c.649G>T	p.Gly217Trp	p.G217W	ENST00000373198	NM_133170.3	217	Ggg/Tgg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52662909	52662910	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0014128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	396	408	1	ENST00000394830.3:c.1443_1443+1delinsTT		p.X481_splice	ENST00000394830	NM_018313.4	481																																																																																
PLK2	10769	MSKCC	GRCh37	5	57752826	57752826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	382	373	0	ENST00000274289.3:c.1102G>A	p.Ala368Thr	p.A368T	ENST00000274289	NM_006622.3	368	Gct/Act																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509174	106509174	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	138	527	2	ENST00000359195.3:c.1168G>T	p.Gly390Trp	p.G390W	ENST00000359195	NM_002649.2	390	Ggg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435254	49435254	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs199761931		P-0014244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	438	723	1	ENST00000301067.7:c.6299C>A	p.Pro2100Gln	p.P2100Q	ENST00000301067	NM_003482.3	2100	cCg/cAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347935	89347935	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	428	751	0	ENST00000301030.4:c.5015C>G	p.Ser1672Ter	p.S1672*	ENST00000301030	NM_001256183.1	1672	tCa/tGa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750824	57750824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	260	366	0	ENST00000274289.3:c.1780G>T	p.Asp594Tyr	p.D594Y	ENST00000274289	NM_006622.3	594	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	105	380	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	236	432	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220650	1220650	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	115	683	0	ENST00000326873.7:c.668A>T	p.Glu223Val	p.E223V	ENST00000326873	NM_000455.4	223	gAg/gTg																																																																															
GNA11	2767	MSKCC	GRCh37	19	3115048	3115048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	67	663	1	ENST00000078429.4:c.583G>A	p.Asp195Asn	p.D195N	ENST00000078429	NM_002067.2	195	Gac/Aac																																																																															
NUF2	83540	MSKCC	GRCh37	1	163307855	163307855	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	157	371	0	ENST00000271452.3:c.481G>A	p.Glu161Lys	p.E161K	ENST00000271452	NM_145697.2	161	Gag/Aag																																																																															
FH	2271	MSKCC	GRCh37	1	241682997	241682997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	141	406	0	ENST00000366560.3:c.26C>T	p.Ala9Val	p.A9V	ENST00000366560	NM_000143.3	9	gCg/gTg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998283	100998283	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	53	157	0	ENST00000325455.5:c.1519del	p.Ala507ArgfsTer39	p.A507Rfs*39	ENST00000325455	NM_001202474.3	507	Gcg/cg																																																																															
ATM	472	MSKCC	GRCh37	11	108139175	108139175	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	149	508	0	ENST00000278616.4:c.2677C>T	p.Gln893Ter	p.Q893*	ENST00000278616	NM_000051.3	893	Caa/Taa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914126	32914126	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	54	307	0	ENST00000380152.3:c.5634C>A	p.Asn1878Lys	p.N1878K	ENST00000380152		1878	aaC/aaA																																																																															
STK11	6794	MSKCC	GRCh37	19	1219323	1219336	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GTATATGGTGATGG	GTATATGGTGATGG	-			P-0014554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	44	520	0	ENST00000326873.7:c.375_388del	p.Met125IlefsTer33	p.M125Ifs*33	ENST00000326873	NM_000455.4	125	atGTATATGGTGATGGag/atag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410063	139410063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	81	779	1	ENST00000277541.6:c.1775G>T	p.Arg592Leu	p.R592L	ENST00000277541	NM_017617.3	592	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0014599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	552	739	1	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540230	23540235	+	inframe_deletion	In_Frame_Del	DEL	GGCTCC	GGCTCC	-			P-0014599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	58	533	3	ENST00000380871.4:c.168_173del	p.Pro62_Glu63del	p.P62_E63del	ENST00000380871	NM_006167.3	56	ccGGAGCCa/cca																																																																															
ROS1	6098	MSKCC	GRCh37	6	117725463	117725463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	94	655	0	ENST00000368508.3:c.418G>A	p.Gly140Arg	p.G140R	ENST00000368508	NM_002944.2	140	Gga/Aga																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64126867	64126867	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	164	796	0	ENST00000334205.4:c.73G>T	p.Glu25Ter	p.E25*	ENST00000334205	NM_003942.2	25	Gag/Tag																																																																															
FLT3	2322	MSKCC	GRCh37	13	28610137	28610138	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0014599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	180	635	0	ENST00000241453.7:c.1352_1353delinsAA	p.Ser451Ter	p.S451*	ENST00000241453	NM_004119.2	451	tCC/tAA																																																																															
SLX4	84464	MSKCC	GRCh37	16	3644516	3644516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	456	1125	0	ENST00000294008.3:c.2098G>A	p.Gly700Arg	p.G700R	ENST00000294008	NM_032444.2	700	Ggg/Agg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615765	1615767	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0014599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	160	904	0	ENST00000344749.5:c.1504_1506del	p.Lys502del	p.K502del	ENST00000344749	NM_001136139.2	502	AAG/-																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610227	10610227	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	344	945	0	ENST00000171111.5:c.483G>C	p.Met161Ile	p.M161I	ENST00000171111	NM_203500.1	161	atG/atC																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076868	41076868	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	173	579	0	ENST00000373198.4:c.1552C>A	p.Leu518Ile	p.L518I	ENST00000373198	NM_133170.3	518	Ctc/Atc																																																																															
KDR	3791	MSKCC	GRCh37	4	55970826	55970826	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	616	547	0	ENST00000263923.4:c.1971del	p.Arg657SerfsTer6	p.R657Sfs*6	ENST00000263923	NM_002253.2	657	agG/ag																																																																															
TERT	7015	MSKCC	GRCh37	5	1293849	1293849	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	168	1101	0	ENST00000310581.5:c.1152G>C	p.Gln384His	p.Q384H	ENST00000310581	NM_198253.2	384	caG/caC																																																																															
MSH3	4437	MSKCC	GRCh37	5	80074652	80074652	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	137	408	0	ENST00000265081.6:c.2432T>C	p.Leu811Pro	p.L811P	ENST00000265081	NM_002439.4	811	cTa/cCa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670416	30670416	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	312	692	0	ENST00000376406.3:c.6016G>C	p.Gly2006Arg	p.G2006R	ENST00000376406	NM_014641.2	2006	Gga/Cga																																																																															
PIM1	5292	MSKCC	GRCh37	6	37139054	37139054	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	128	584	0	ENST00000373509.5:c.394T>C	p.Phe132Leu	p.F132L	ENST00000373509	NM_002648.3	132	Ttc/Ctc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509826	106509826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	239	707	0	ENST00000359195.3:c.1820C>T	p.Thr607Ile	p.T607I	ENST00000359195	NM_002649.2	607	aCa/aTa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139403492	139403492	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	230	988	0	ENST00000277541.6:c.3001G>T	p.Gly1001Cys	p.G1001C	ENST00000277541	NM_017617.3	1001	Ggc/Tgc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841231	15841236	+	inframe_deletion	In_Frame_Del	DEL	AGCCGG	AGCCGG	-			P-0014599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	81	234	0	ENST00000307771.7:c.1338_1343delGAGCCG	p.Ser447_Arg448del	p.S447_R448del	ENST00000307771	NM_005089.3	439	AGCCGG/-																																																																															
TET1	80312	MSKCC	GRCh37	10	70446399	70446399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	325	501	0	ENST00000373644.4:c.5339G>A	p.Arg1780Gln	p.R1780Q	ENST00000373644	NM_030625.2	1780	cGa/cAa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953287	17953340	+	inframe_deletion	In_Frame_Del	DEL	CGAGTGCCGGTCTGCCTGGCAGGCGGCCACGCGGCGCAGGGCTCTGCGCACCGT	CGAGTGCCGGTCTGCCTGGCAGGCGGCCACGCGGCGCAGGGCTCTGCGCACCGT	-			P-0014629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	357	625	0	ENST00000458235.1:c.646_699del	p.Thr216_Ser233del	p.T216_S233del	ENST00000458235	NM_000215.3	216	ACGGTGCGCAGAGCCCTGCGCCGCGTGGCCGCCTGCCAGGCAGACCGGCACTCG/-																																																																															
GNAS	2778	MSKCC	GRCh37	20	57466722	57466857	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	AGGCCGCCCGCGCCCGCCGCCGCCGCAGCCCGGCCGCGCCCCGCCGCCGCCGCCGCCGCCATGGGCTGCCTCGGGAACAGTAAGACCGAGGACCAGCGCAACGAGGAGAAGGCGCAGCGTGAGGCCAACAAAAAGA	AGGCCGCCCGCGCCCGCCGCCGCCGCAGCCCGGCCGCGCCCCGCCGCCGCCGCCGCCGCCATGGGCTGCCTCGGGAACAGTAAGACCGAGGACCAGCGCAACGAGGAGAAGGCGCAGCGTGAGGCCAACAAAAAGA	-			P-0014629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			0	36	0	0	ENST00000371085.3:c.-60_76delAGGCCGCCCGCGCCCGCCGCCGCCGCAGCCCGGCCGCGCCCCGCCGCCGCCGCCGCCGCCATGGGCTGCCTCGGGAACAGTAAGACCGAGGACCAGCGCAACGAGGAGAAGGCGCAGCGTGAGGCCAACAAAAAGA		p.*20fs*	ENST00000371085	NM_000516.4																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0014634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	217	682	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67660481	67660482	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0014634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	182	451	0	ENST00000264010.4:c.1383dup	p.Tyr462LeufsTer3	p.Y462Lfs*3	ENST00000264010	NM_006565.3	461	tcc/tCcc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123171475	123171475	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0014634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	88	464	1	ENST00000218089.9:c.385+2T>A		p.X129_splice	ENST00000218089	NM_001042749.1	129																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	213	470	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	109	668	2	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271460	26271460	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	37	373	0	ENST00000305910.3:c.153G>C	p.Glu51Asp	p.E51D	ENST00000305910	NM_003534.2	51	gaG/gaC																																																																															
RB1	5925	MSKCC	GRCh37	13	48916747	48916747	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	73	430	0	ENST00000267163.4:c.277C>T	p.Gln93Ter	p.Q93*	ENST00000267163	NM_000321.2	93	Caa/Taa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81606131	81606131	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	123	668	0	ENST00000298171.2:c.801G>C	p.Leu267Phe	p.L267F	ENST00000298171	NM_000369.2	267	ttG/ttC																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202851	16202851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	92	592	1	ENST00000375759.3:c.559C>T	p.Arg187Trp	p.R187W	ENST00000375759	NM_015001.2	187	Cgg/Tgg																																																																															
POLE	5426	MSKCC	GRCh37	12	133218793	133218793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	73	589	2	ENST00000320574.5:c.5143G>A	p.Glu1715Lys	p.E1715K	ENST00000320574	NM_006231.2	1715	Gag/Aag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250731	10250731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	130	806	0	ENST00000340748.4:c.3749C>T	p.Ser1250Phe	p.S1250F	ENST00000340748		1250	tCc/tTc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026303	48026303	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	90	420	0	ENST00000234420.5:c.1181C>G	p.Ser394Cys	p.S394C	ENST00000234420	NM_000179.2	394	tCt/tGt																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793242	242793242	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	186	807	0	ENST00000334409.5:c.835C>G	p.Pro279Ala	p.P279A	ENST00000334409	NM_005018.2	279	Cct/Gct																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628694	187628694	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	128	724	0	ENST00000441802.2:c.2288G>T	p.Ser763Ile	p.S763I	ENST00000441802	NM_005245.3	763	aGt/aTt																																																																															
APC	324	MSKCC	GRCh37	5	112090627	112090627	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	51	426	0	ENST00000257430.4:c.40G>C	p.Glu14Gln	p.E14Q	ENST00000257430	NM_000038.5	14	Gag/Cag																																																																															
EZH2	2146	MSKCC	GRCh37	7	148526856	148526856	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	102	541	0	ENST00000320356.2:c.448A>G	p.Ile150Val	p.I150V	ENST00000320356	NM_004456.4	150	Ata/Gta																																																																															
TEK	7010	MSKCC	GRCh37	9	27202866	27202866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	77	656	0	ENST00000380036.4:c.1958C>T	p.Ser653Phe	p.S653F	ENST00000380036	NM_000459.3	653	tCc/tTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9928021	9928021	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	295	622	0	ENST00000330684.3:c.1718T>A	p.Val573Asp	p.V573D	ENST00000330684	NM_001134407.1	573	gTt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577017	7577017	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0014903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	445	812	0	ENST00000269305.4:c.919+2T>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
KLF4	9314	MSKCC	GRCh37	9	110249378	110249379	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-			P-0014903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	1351	1496	1	ENST00000374672.4:c.1194_1195del	p.Cys398Ter	p.C398*	ENST00000374672	NM_004235.4	398	tgTGat/tgat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	76	706	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0015064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	266	557	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
MGA	23269	MSKCC	GRCh37	15	42040972	42040972	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	177	570	0	ENST00000219905.7:c.5350G>T	p.Gly1784Ter	p.G1784*	ENST00000219905	NM_001164273.1	1784	Gga/Tga																																																																															
EZH2	2146	MSKCC	GRCh37	7	148506164	148506164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0015064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	75	441	0	ENST00000320356.2:c.2194A>G	p.Arg732Gly	p.R732G	ENST00000320356	NM_004456.4	732	Aga/Gga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	245	554	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SESN3	143686	MSKCC	GRCh37	11	94911005	94911007	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0020476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	277	1239	1	ENST00000536441.1:c.1123_1125del	p.Leu375del	p.L375del	ENST00000536441	NM_144665.3	375	CTT/-																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348962	11348962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	471	1191	0	ENST00000332029.2:c.374G>A	p.Ser125Asn	p.S125N	ENST00000332029	NM_003745.1	125	aGc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577061	7577062	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0020476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	392	1186	0	ENST00000269305.4:c.876_877del	p.Glu294AlafsTer11	p.E294Afs*11	ENST00000269305	NM_001126112.2	292	aaAGgg/aagg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026832	71026832	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	215	614	0	ENST00000318789.4:c.1390G>C	p.Val464Leu	p.V464L	ENST00000318789	NM_032682.5	464	Gtt/Ctt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0020685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	487	844	1	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598246	28598246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	178	897	1	ENST00000253063.3:c.218C>T	p.Ser73Phe	p.S73F	ENST00000253063	NM_031459.4	73	tCt/tTt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40747109	40747109	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	133	700	2	ENST00000373198.4:c.2973G>T	p.Trp991Cys	p.W991C	ENST00000373198	NM_133170.3	991	tgG/tgT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242482	55242506	+	protein_altering_variant	In_Frame_Del	DEL	CATCTCCGAAAGCCAACAAGGAAAT	CATCTCCGAAAGCCAACAAGGAAAT	A			P-0020685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	2437	656	0	ENST00000275493.2:c.2252_2276delinsA	p.Thr751_Ile759delinsAsn	p.T751_I759delinsN	ENST00000275493	NM_005228.3	751	aCATCTCCGAAAGCCAACAAGGAAATc/aAc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442567	52442567	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	40	805	5	ENST00000460680.1:c.178C>T	p.Arg60Ter	p.R60*	ENST00000460680	NM_004656.3	60	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0020950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	393	1028	1	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	301	723	2	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	284	1076	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1625652	1625652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	304	1204	1	ENST00000344749.5:c.422C>T	p.Ser141Leu	p.S141L	ENST00000344749	NM_001136139.2	141	tCg/tTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039404	47039404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	217	498	1	ENST00000329236.7:c.796C>T	p.Arg266Cys	p.R266C	ENST00000329236	NM_001204466.1	266	Cgc/Tgc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2964000	2964000	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	136	869	0	ENST00000396946.4:c.1808-1G>A		p.X603_splice	ENST00000396946	NM_032415.4	603																																																																																
NTRK1	4914	MSKCC	GRCh37	1	156846312	156846312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	235	1131	1	ENST00000524377.1:c.1753C>A	p.Leu585Met	p.L585M	ENST00000524377	NM_002529.3	585	Ctg/Atg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934627	9934627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	13	587	0	ENST00000330684.3:c.1528G>T	p.Gly510Cys	p.G510C	ENST00000330684	NM_001134407.1	510	Ggc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101134	41101134	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	138	905	0	ENST00000373198.4:c.1222G>C	p.Glu408Gln	p.E408Q	ENST00000373198	NM_133170.3	408	Gag/Cag																																																																															
EP300	2033	MSKCC	GRCh37	22	41556714	41556714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	196	701	0	ENST00000263253.7:c.3659C>T	p.Ser1220Phe	p.S1220F	ENST00000263253	NM_001429.3	1220	tCc/tTc																																																																															
MET	4233	MSKCC	GRCh37	7	116411871	116411920	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTAACAAGCTCTTTCTTTCTCTCTGTTTTAAGATCTGGGCAGTGAATTAG	TTAACAAGCTCTTTCTTTCTCTCTGTTTTAAGATCTGGGCAGTGAATTAG	-			P-0020950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	382	1340	0	ENST00000397752.3:c.2888-30_2907del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
TP53	7157	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	416	1226	0	ENST00000269305.4:c.389T>G	p.Leu130Arg	p.L130R	ENST00000269305	NM_001126112.2	130	cTc/cGc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073271	8073271	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0020984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	59	487	0	ENST00000377482.5:c.1388A>G	p.Ter463TrpextTer30	p.*463Wext*30	ENST00000377482	NM_018948.3	463	tAg/tGg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134644700	134644700	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	235	836	0	ENST00000398015.3:c.102del	p.Trp34Ter	p.W34*	ENST00000398015	NM_004441.4	34	tGg/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	264	844	0	ENST00000269305.4:c.568C>A	p.Pro190Thr	p.P190T	ENST00000269305	NM_001126112.2	190	Cct/Act																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942183	81942183	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	208	756	0	ENST00000359376.3:c.1720A>G	p.Thr574Ala	p.T574A	ENST00000359376	NM_002661.3	574	Acc/Gcc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091722	29091722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	42	137	2	ENST00000328354.6:c.1235G>A	p.Ser412Asn	p.S412N	ENST00000328354	NM_007194.3	412	aGt/aAt																																																																															
APC	324	MSKCC	GRCh37	5	112175271	112175271	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	213	398	0	ENST00000257430.4:c.3980C>G	p.Ser1327Ter	p.S1327*	ENST00000257430	NM_000038.5	1327	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0021297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	221	841	1	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81891937	81891937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	41	810	1	ENST00000359376.3:c.407C>T	p.Ala136Val	p.A136V	ENST00000359376	NM_002661.3	136	gCg/gTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400023	139400023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	243	879	0	ENST00000277541.6:c.4325C>T	p.Pro1442Leu	p.P1442L	ENST00000277541	NM_017617.3	1442	cCg/cTg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148511119	148511119	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	174	645	0	ENST00000320356.2:c.1783del	p.Ala595ProfsTer80	p.A595Pfs*80	ENST00000320356	NM_004456.4	595	Gcc/cc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72058569	72058569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	53	735	2	ENST00000357731.5:c.871C>T	p.His291Tyr	p.H291Y	ENST00000357731	NM_173808.2	291	Cac/Tac																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258744	115258744	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434596		P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	246	621	0	ENST00000369535.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000369535	NM_002524.4	13	gGt/gAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692919	89692919	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	152	660	0	ENST00000371953.3:c.403A>G	p.Ile135Val	p.I135V	ENST00000371953	NM_000314.4	135	Ata/Gta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	152	833	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858337	9858337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	223	541	2	ENST00000330684.3:c.3064C>T	p.Arg1022Cys	p.R1022C	ENST00000330684	NM_001134407.1	1022	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	467	857	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59821817	59821817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	145	796	0	ENST00000259008.2:c.2233G>A	p.Ala745Thr	p.A745T	ENST00000259008	NM_032043.2	745	Gca/Aca																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155411	185155411	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140970208		P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	33	499	2	ENST00000265026.3:c.652G>A	p.Ala218Thr	p.A218T	ENST00000265026	NM_004721.4	218	Gca/Aca																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957873	1957873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	327	734	1	ENST00000382891.5:c.2839C>T	p.Arg947Cys	p.R947C	ENST00000382891	NM_133335.3	947	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112174310	112174310	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	88	496	0	ENST00000257430.4:c.3022del	p.Ile1008TyrfsTer14	p.I1008Yfs*14	ENST00000257430	NM_000038.5	1007	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175802	112175802	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	114	439	0	ENST00000257430.4:c.4512del	p.Ser1505AlafsTer2	p.S1505Afs*2	ENST00000257430	NM_000038.5	1504	tCc/tc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180039570	180039570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	467	985	2	ENST00000261937.6:c.3473C>T	p.Ala1158Val	p.A1158V	ENST00000261937	NM_182925.4	1158	gCg/gTg																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158411	26158411	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1050932839		P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	366	973	2	ENST00000289316.2:c.14C>T	p.Thr5Ile	p.T5I	ENST00000289316	NM_138720.2	5	aCc/aTc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900200	101900200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	118	590	0	ENST00000374994.4:c.634G>A	p.Gly212Ser	p.G212S	ENST00000374994	NM_004612.2	212	Ggc/Agc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412391	63412392	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	CA			P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	389	994	1	ENST00000330258.3:c.775_776delinsTG	p.Glu259Ter	p.E259*	ENST00000330258	NM_152424.3	259	GAa/TGa																																																																															
STK11	6794	MSKCC	GRCh37	19	1221243	1221243	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	203	872	5	ENST00000326873.7:c.766G>T	p.Glu256Ter	p.E256*	ENST00000326873	NM_000455.4	256	Gaa/Taa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849872	156849872	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	330	868	1	ENST00000524377.1:c.2128G>T	p.Val710Leu	p.V710L	ENST00000524377	NM_002529.3	710	Gtg/Ttg																																																																															
POLE	5426	MSKCC	GRCh37	12	133214725	133214726	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0021521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	162	654	0	ENST00000320574.5:c.5553-1_5553delinsTT		p.X1851_splice	ENST00000320574	NM_006231.2	1851																																																																																
ERCC5	2073	MSKCC	GRCh37	13	103514650	103514650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	42	520	0	ENST00000355739.4:c.1151C>T	p.Ser384Leu	p.S384L	ENST00000355739	NM_000123.3	384	tCa/tTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55229197	55229197	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	95	410	1	ENST00000275493.2:c.1504A>G	p.Thr502Ala	p.T502A	ENST00000275493	NM_005228.3	502	Aca/Gca																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245151	53245151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	107	427	2	ENST00000375401.3:c.789G>T	p.Glu263Asp	p.E263D	ENST00000375401	NM_004187.3	263	gaG/gaT																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88679204	88679204	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	44	400	0	ENST00000372037.3:c.1144G>T	p.Gly382Cys	p.G382C	ENST00000372037	NM_004329.2	382	Ggc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262553	16262553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	79	594	0	ENST00000375759.3:c.9818C>T	p.Thr3273Ile	p.T3273I	ENST00000375759	NM_015001.2	3273	aCc/aTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591964	48591964	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	42	504	0	ENST00000342988.3:c.1127T>A	p.Ile376Asn	p.I376N	ENST00000342988	NM_005359.5	376	aTt/aAt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47710066	47710066	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	51	421	0	ENST00000233146.2:c.2783C>G	p.Ser928Ter	p.S928*	ENST00000233146	NM_000251.2	928	tCa/tGa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69050686	69050686	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	124	862	0	ENST00000288368.4:c.4021del	p.Ala1341HisfsTer37	p.A1341Hfs*37	ENST00000288368	NM_024870.2	1341	Gca/ca																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597475	10597490	+	frameshift_variant	Frame_Shift_Del	DEL	CGTGTGACCATCATAG	CGTGTGACCATCATAG	-			P-0021521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	130	921	0	ENST00000171111.5:c.1713_1728del	p.Tyr572SerfsTer18	p.Y572Sfs*18	ENST00000171111	NM_203500.1	571	ggCTATGATGGTCACACG/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	145	406	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0039428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	46	861	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																															
NF2	4771	MSKCC	GRCh37	22	30077427	30077427	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0039428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	25	203	0	ENST00000338641.4:c.1575-1G>C		p.X525_splice	ENST00000338641	NM_000268.3	525																																																																																
TERT	7015	MSKCC	GRCh37	5	1264625	1264625	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	39	805	0	ENST00000310581.5:c.2737G>T	p.Ala913Ser	p.A913S	ENST00000310581	NM_198253.2	913	Gcc/Tcc																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152857997	152857997	+	synonymous_variant	Silent	SNP	G	G	A	rs201983563		P-0039428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	11	156	0	ENST00000406277.2:c.618C>T	p.Pro206=	p.P206=	ENST00000406277	NM_152274.4	206	ccC/ccT																																																																															
IL10	3586	MSKCC	GRCh37	1	206945669	206945669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	34	475	0	ENST00000423557.1:c.112C>A	p.Pro38Thr	p.P38T	ENST00000423557	NM_000572.2	38	Cct/Act																																																																															
CYLD	1540	MSKCC	GRCh37	16	50785677	50785677	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	40	609	0	ENST00000398568.2:c.667A>G	p.Met223Val	p.M223V	ENST00000398568	NM_001042412.1	223	Atg/Gtg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610247	10610247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	34	728	0	ENST00000171111.5:c.463G>T	p.Val155Phe	p.V155F	ENST00000171111	NM_203500.1	155	Gtc/Ttc																																																																															
NF1	4763	MSKCC	GRCh37	17	29562628	29562628	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0039430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	10	327	0	ENST00000358273.4:c.3709-1G>A		p.X1237_splice	ENST00000358273	NM_001042492.2	1237																																																																																
STK11	6794	MSKCC	GRCh37	19	1221976	1221976	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1259	250	595	0	ENST00000326873.7:c.891G>T	p.Arg297Ser	p.R297S	ENST00000326873	NM_000455.4	297	agG/agT																																																																															
ERF	2077	MSKCC	GRCh37	19	42752723	42752724	+	missense_variant	Missense_Mutation	DNP	CG	CG	AT			P-0039430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1159	156	621	0	ENST00000222329.4:c.1540_1541delinsAT	p.Arg514Ile	p.R514I	ENST00000222329	NM_006494.2	514	CGt/ATt																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665329	138665329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	65	696	0	ENST00000330315.3:c.236G>T	p.Gly79Val	p.G79V	ENST00000330315	NM_023067.3	79	gGc/gTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	94	362	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99440129	99440129	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	75	356	1	ENST00000268035.6:c.1101delG	p.Asn368IlefsTer17	p.N368Ifs*17	ENST00000268035	NM_000875.3	366	cGg/cg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532653	63532654	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	165	672	0	ENST00000307078.5:c.1925dupA	p.Ala643GlyfsTer64	p.A643Gfs*64	ENST00000307078	NM_004655.3	642	aag/aaAg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	164	335	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
ALK	238	MSKCC	GRCh37	2	29451784	29451784	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772809305		P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	117	705	0	ENST00000389048.3:c.2781del	p.Cys928AlafsTer11	p.C928Afs*11	ENST00000389048	NM_004304.4	927	ggG/gg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518024	187518024	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147405100		P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	106	480	0	ENST00000441802.2:c.12670G>A	p.Ala4224Thr	p.A4224T	ENST00000441802	NM_005245.3	4224	Gct/Act																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	93	418	2	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026852	48026852	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376220212		P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	95	380	0	ENST00000234420.5:c.1730G>A	p.Arg577His	p.R577H	ENST00000234420	NM_000179.2	577	cGc/cAc																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519505	137519506	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs780346130		P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	83	304	3	ENST00000367739.4:c.1132_1133del	p.Ser378PhefsTer6	p.S378Ffs*6	ENST00000367739	NM_000416.2	378	AGt/t																																																																															
APC	324	MSKCC	GRCh37	5	112164585	112164585	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	88	268	0	ENST00000257430.4:c.1659G>A	p.Trp553Ter	p.W553*	ENST00000257430	NM_000038.5	553	tgG/tgA																																																																															
ATM	472	MSKCC	GRCh37	11	108173696	108173696	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	79	343	0	ENST00000278616.4:c.5441del	p.Leu1814TrpfsTer14	p.L1814Wfs*14	ENST00000278616	NM_000051.3	1812	gcT/gc																																																																															
ERG	2078	MSKCC	GRCh37	21	39755470	39755470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	113	461	1	ENST00000288319.7:c.1295C>T	p.Ala432Val	p.A432V	ENST00000288319	NM_182918.3	432	gCg/gTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	148	801	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	155	526	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	182	862	1	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231610	5231611	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	21	180	0	ENST00000357368.4:c.1865dup	p.Gln623SerfsTer4	p.Q623Sfs*4	ENST00000357368	NM_002850.3	622	cct/ccCt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135314	30135314	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	53	454	0	ENST00000331968.5:c.504G>T	p.Trp168Cys	p.W168C	ENST00000331968	NM_002742.2	168	tgG/tgT																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84393376	84393376	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	69	243	0	ENST00000321945.7:c.281del	p.Lys94ArgfsTer4	p.K94Rfs*4	ENST00000321945	NM_139076.2	94	aAg/ag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444808	49444809	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	190	851	0	ENST00000301067.7:c.2657dup	p.Gly887TrpfsTer16	p.G887Wfs*16	ENST00000301067	NM_003482.3	886	cct/ccCt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243809	41243809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	146	543	0	ENST00000357654.3:c.3739G>A	p.Val1247Ile	p.V1247I	ENST00000357654	NM_007294.3	1247	Gtt/Att																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779742	3779742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	143	674	0	ENST00000262367.5:c.5306G>A	p.Arg1769Gln	p.R1769Q	ENST00000262367	NM_004380.2	1769	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112176017	112176017	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	78	247	0	ENST00000257430.4:c.4726G>T	p.Glu1576Ter	p.E1576*	ENST00000257430	NM_000038.5	1576	Gaa/Taa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162749989	162749989	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	131	409	0	ENST00000367921.3:c.2521T>G	p.Ser841Ala	p.S841A	ENST00000367921	NM_006182.2	841	Tca/Gca																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982349	201982349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	240	866	0	ENST00000359651.3:c.728G>T	p.Gly243Val	p.G243V	ENST00000359651		243	gGg/gTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097655	8097655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	97	322	0	ENST00000346208.3:c.37C>T	p.His13Tyr	p.H13Y	ENST00000346208		13	Cac/Tac																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742823	17742823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	201	853	2	ENST00000250003.3:c.731C>T	p.Ala244Val	p.A244V	ENST00000250003	NM_002478.4	244	gCg/gTg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112893850	112893850	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	121	427	0	ENST00000351677.2:c.739T>G	p.Phe247Val	p.F247V	ENST00000351677	NM_002834.3	247	Ttt/Gtt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992834	72992834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	132	675	1	ENST00000268489.5:c.1211G>A	p.Gly404Asp	p.G404D	ENST00000268489	NM_006885.3	404	gGc/gAc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942084	81942084	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	102	605	2	ENST00000359376.3:c.1621A>T	p.Thr541Ser	p.T541S	ENST00000359376	NM_002661.3	541	Acg/Tcg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40461064	40461064	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	53	708	0	ENST00000345506.4:c.2063-1G>A		p.X688_splice	ENST00000345506	NM_003152.3	688																																																																																
RPTOR	57521	MSKCC	GRCh37	17	78727931	78727931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	125	551	0	ENST00000306801.3:c.776C>T	p.Pro259Leu	p.P259L	ENST00000306801	NM_020761.2	259	cCg/cTg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4117608	4117608	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	143	554	0	ENST00000262948.5:c.112C>T	p.Gln38Ter	p.Q38*	ENST00000262948	NM_030662.3	38	Cag/Tag																																																																															
CASP8	841	MSKCC	GRCh37	2	202149668	202149668	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	105	438	0	ENST00000358485.4:c.1109T>G	p.Ile370Ser	p.I370S	ENST00000358485	NM_001080125.1	370	aTc/aGc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509804	187509804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	52	273	0	ENST00000441802.2:c.13709G>A	p.Gly4570Asp	p.G4570D	ENST00000441802	NM_005245.3	4570	gGc/gAc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295394	1295394	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	45	191	0				ENST00000310581	NM_198253.2																																																																																	
PIK3R1	5295	MSKCC	GRCh37	5	67576801	67576801	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	78	313	0	ENST00000274335.5:c.883T>C	p.Ser295Pro	p.S295P	ENST00000274335		295	Tca/Cca																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527599	157527599	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	154	509	0	ENST00000346085.5:c.5324A>C	p.Lys1775Thr	p.K1775T	ENST00000346085	NM_020732.3	1775	aAg/aCg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187274	38187274	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	134	530	0	ENST00000317025.8:c.1203G>T	p.Glu401Asp	p.E401D	ENST00000317025	NM_023034.1	401	gaG/gaT																																																																															
ABL1	25	MSKCC	GRCh37	9	133759821	133759821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	116	613	1	ENST00000318560.5:c.2144G>A	p.Arg715His	p.R715H	ENST00000318560	NM_005157.4	715	cGc/cAc																																																																															
AR	367	MSKCC	GRCh37	X	66766079	66766079	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	180	414	0	ENST00000374690.3:c.1091A>G	p.Tyr364Cys	p.Y364C	ENST00000374690	NM_000044.3	364	tAc/tGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241677	55241677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1166	275	280	0	ENST00000275493.2:c.2125G>A	p.Glu709Lys	p.E709K	ENST00000275493	NM_005228.3	709	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0003107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	240	224	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874257	155874257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	67	256	0	ENST00000368323.3:c.274G>T	p.Ala92Ser	p.A92S	ENST00000368323	NM_006912.5	92	Gca/Tca																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423511	88423511	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	90	356	0	ENST00000360948.2:c.2324C>G	p.Ser775Ter	p.S775*	ENST00000360948	NM_001012338.2	775	tCa/tGa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534457	63534457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	63	134	0	ENST00000307078.5:c.1064C>T	p.Thr355Ile	p.T355I	ENST00000307078	NM_004655.3	355	aCc/aTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604699	48604699	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	178	275	0	ENST00000342988.3:c.1521A>C	p.Lys507Asn	p.K507N	ENST00000342988	NM_005359.5	507	aaA/aaC																																																																															
ESR1	2099	MSKCC	GRCh37	6	152420094	152420112	+	coding_sequence_variant,3_prime_UTR_variant	Frame_Shift_Del	DEL	CGGTCTGAGAGCTCCCTGG	CGGTCTGAGAGCTCCCTGG	-			P-0003107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	127	162	0	ENST00000206249.3:c.1782_*12delGGTCTGAGAGCTCCCTGGC		p.*594fs*	ENST00000206249	NM_000125.3	594																																																																																
ALK	238	MSKCC	GRCh37	2	30143341	30143341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	56	266	0	ENST00000389048.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000389048	NM_004304.4	62	tCg/tTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202139614	202139614	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0003206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	96	370	0	ENST00000358485.4:c.775G>T	p.Glu259Ter	p.E259*	ENST00000358485	NM_001080125.1	259	Gag/Tag																																																																															
MED12	9968	MSKCC	GRCh37	X	70342404	70342404	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	78	343	0	ENST00000374080.3:c.1295G>T	p.Gly432Val	p.G432V	ENST00000374080		432	gGa/gTa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123182867	123182867	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	103	434	1	ENST00000218089.9:c.832C>G	p.Gln278Glu	p.Q278E	ENST00000218089	NM_001042749.1	278	Caa/Gaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21994137	21994178	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CCTGGTCTTCTAGGAAGCGGCTGCTGCCCTAGACGCTGGCTC	CCTGGTCTTCTAGGAAGCGGCTGCTGCCCTAGACGCTGGCTC	-			P-0003206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	69	399	0	ENST00000361570.3:c.276_316+1delGAGCCAGCGTCTAGGGCAGCAGCCGCTTCCTAGAAGACCAGG		p.X92_splice	ENST00000361570	NM_058195.3	92																																																																																
MEN1	4221	MSKCC	GRCh37	11	64575440	64575444	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGC	TCTGC	-			P-0003206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	88	337	0	ENST00000337652.1:c.588_592del	p.Glu196AspfsTer3	p.E196Dfs*3	ENST00000337652	NM_130803.2	196	gaGCAGAca/gaca																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	237	170	0				ENST00000310581	NM_198253.2																																																																																	
CSF1R	1436	MSKCC	GRCh37	5	149459779	149459779	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	196	335	0	ENST00000286301.3:c.428T>A	p.Val143Glu	p.V143E	ENST00000286301	NM_005211.3	143	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0004091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	273	505	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29653210	29653210	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	167	278	0	ENST00000358273.4:c.5209del	p.Leu1737Ter	p.L1737*	ENST00000358273	NM_001042492.2	1736	gaC/ga																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	81	223	0				ENST00000310581	NM_198253.2																																																																																	
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0004679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	214	645	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	155	331	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0004679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	400	458	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247244	153247244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	258	764	0	ENST00000281708.4:c.1558G>A	p.Asp520Asn	p.D520N	ENST00000281708	NM_033632.3	520	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0024991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	599	722	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031919	26031919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	61	369	0	ENST00000244661.2:c.370G>A	p.Asp124Asn	p.D124N	ENST00000244661	NM_003537.3	124	Gac/Aac																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937893	36937893	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1431	250	1011	0	ENST00000361632.4:c.943C>A	p.Pro315Thr	p.P315T	ENST00000361632		315	Cct/Act																																																																															
ROS1	6098	MSKCC	GRCh37	6	117677924	117677924	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	99	436	0	ENST00000368508.3:c.4009A>C	p.Ser1337Arg	p.S1337R	ENST00000368508	NM_002944.2	1337	Agt/Cgt																																																																															
MET	4233	MSKCC	GRCh37	7	116422120	116422120	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	99	443	0	ENST00000397752.3:c.3601G>C	p.Val1201Leu	p.V1201L	ENST00000397752	NM_000245.2	1201	Gtc/Ctc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0038619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	312	736	2	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
KIT	3815	MSKCC	GRCh37	4	55599250	55599250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	61	405	0	ENST00000288135.5:c.2376C>A	p.Asp792Glu	p.D792E	ENST00000288135	NM_000222.2	792	gaC/gaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0039163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	523	735	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	346	427	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0039163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	342	361	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81957157	81957157	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202210217		P-0039163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	148	606	1	ENST00000359376.3:c.2375G>A	p.Arg792His	p.R792H	ENST00000359376	NM_002661.3	792	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112137078	112137078	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0039163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	117	357	0	ENST00000257430.4:c.832C>T	p.Gln278Ter	p.Q278*	ENST00000257430	NM_000038.5	278	Cag/Tag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412602	63412602	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	644	327	0	ENST00000330258.3:c.565C>T	p.Gln189Ter	p.Q189*	ENST00000330258	NM_152424.3	189	Caa/Taa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786733	3786734	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	465	668	0	ENST00000262367.5:c.4477dup	p.Ile1493AsnfsTer26	p.I1493Nfs*26	ENST00000262367	NM_004380.2	1493	ata/aAta																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118954	70118954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	587	783	2	ENST00000245479.2:c.526C>T	p.Pro176Ser	p.P176S	ENST00000245479	NM_000346.3	176	Ccg/Tcg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231708	66231708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	24	438	0	ENST00000273854.3:c.1992C>G	p.His664Gln	p.H664Q	ENST00000273854	NM_004439.5	664	caC/caG																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115744	8115744	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	209	564	0	ENST00000346208.3:c.1090A>G	p.Arg364Gly	p.R364G	ENST00000346208		364	Aga/Gga																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470596	25470601	+	inframe_deletion	In_Frame_Del	DEL	CCAATG	CCAATG	-			P-0039197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	136	985	0	ENST00000264709.3:c.873_878del	p.Ile292_Gly293del	p.I292_G293del	ENST00000264709	NM_175629.2	291	ggCATTGGg/ggg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260110	16260110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	199	583	0	ENST00000375759.3:c.7375G>A	p.Val2459Met	p.V2459M	ENST00000375759	NM_015001.2	2459	Gtg/Atg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16264040	16264040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	432	857	0	ENST00000375759.3:c.10409G>A	p.Gly3470Glu	p.G3470E	ENST00000375759	NM_015001.2	3470	gGa/gAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092753	27092753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	189	493	0	ENST00000324856.7:c.2774G>A	p.Gly925Glu	p.G925E	ENST00000324856	NM_006015.4	925	gGa/gAa																																																																															
JUN	3725	MSKCC	GRCh37	1	59248474	59248474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	228	622	0	ENST00000371222.2:c.269C>T	p.Thr90Ile	p.T90I	ENST00000371222	NM_002228.3	90	aCc/aTc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120483194	120483194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	130	449	1	ENST00000256646.2:c.3167C>T	p.Thr1056Ile	p.T1056I	ENST00000256646	NM_024408.3	1056	aCt/aTt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206667312	206667312	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781860835		P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	208	571	2	ENST00000367120.3:c.2105G>A	p.Arg702His	p.R702H	ENST00000367120	NM_014002.3	702	cGc/cAc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287480	46287480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	95	387	0	ENST00000334344.6:c.5339G>A	p.Gly1780Asp	p.G1780D	ENST00000334344	NM_152641.2	1780	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446476	49446476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	177	480	1	ENST00000301067.7:c.1129C>T	p.Pro377Ser	p.P377S	ENST00000301067	NM_003482.3	377	Cct/Tct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446828	49446828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	205	491	0	ENST00000301067.7:c.982G>A	p.Ala328Thr	p.A328T	ENST00000301067	NM_003482.3	328	Gcg/Acg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557503	21557503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	237	611	1	ENST00000382592.4:c.2342G>A	p.Ser781Asn	p.S781N	ENST00000382592	NM_014572.2	781	aGt/aAt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001359	29001359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	154	347	0	ENST00000282397.4:c.1373G>A	p.Gly458Asp	p.G458D	ENST00000282397	NM_002019.4	458	gGt/gAt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95556890	95556890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	200	399	0	ENST00000343455.3:c.5714C>T	p.Ala1905Val	p.A1905V	ENST00000343455	NM_177438.2	1905	gCa/gTa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95571571	95571571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	106	319	0	ENST00000343455.3:c.3106G>A	p.Glu1036Lys	p.E1036K	ENST00000343455	NM_177438.2	1036	Gaa/Aaa																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40678566	40678566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	193	546	1	ENST00000249776.8:c.308C>T	p.Thr103Ile	p.T103I	ENST00000249776	NM_033286.3	103	aCa/aTa																																																																															
MGA	23269	MSKCC	GRCh37	15	41988923	41988923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	147	526	0	ENST00000219905.7:c.1715C>T	p.Ser572Leu	p.S572L	ENST00000219905	NM_001164273.1	572	tCa/tTa																																																																															
MGA	23269	MSKCC	GRCh37	15	42026793	42026793	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	164	270	0	ENST00000219905.7:c.3916+1G>C		p.X1306_splice	ENST00000219905	NM_001164273.1	1306																																																																																
TP53BP1	7158	MSKCC	GRCh37	15	43748285	43748285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	237	796	0	ENST00000382044.4:c.2521C>T	p.Pro841Ser	p.P841S	ENST00000382044	NM_001141980.1	841	Cct/Tct																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457307	67457307	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	221	690	0	ENST00000327367.4:c.281G>A	p.Trp94Ter	p.W94*	ENST00000327367	NM_005902.3	94	tGg/tAg																																																																															
CD276	80381	MSKCC	GRCh37	15	73996309	73996309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	39	99	0	ENST00000318443.5:c.1043G>A	p.Gly348Asp	p.G348D	ENST00000318443	NM_001024736.1	348	gGc/gAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348208	348208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	291	760	0	ENST00000262320.3:c.1298G>A	p.Gly433Glu	p.G433E	ENST00000262320	NM_003502.3	433	gGg/gAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778605	3778605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	231	645	1	ENST00000262367.5:c.6443G>A	p.Gly2148Asp	p.G2148D	ENST00000262367	NM_004380.2	2148	gGc/gAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779440	3779440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	352	873	0	ENST00000262367.5:c.5608G>A	p.Ala1870Thr	p.A1870T	ENST00000262367	NM_004380.2	1870	Gcc/Acc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843479	3843479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	237	476	0	ENST00000262367.5:c.1124G>A	p.Gly375Glu	p.G375E	ENST00000262367	NM_004380.2	375	gGa/gAa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029395	16029395	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	85	374	0	ENST00000268712.3:c.1634+1G>A		p.X545_splice	ENST00000268712	NM_006311.3	545																																																																																
NF1	4763	MSKCC	GRCh37	17	29588817	29588817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	134	347	0	ENST00000358273.4:c.4666G>A	p.Asp1556Asn	p.D1556N	ENST00000358273	NM_001042492.2	1556	Gat/Aat																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37884005	37884005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	286	731	0	ENST00000269571.5:c.3476C>T	p.Ala1159Val	p.A1159V	ENST00000269571		1159	gCt/gTt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696668	47696668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	173	491	1	ENST00000347630.2:c.280C>T	p.Pro94Ser	p.P94S	ENST00000347630	NM_001007230.1	94	Cca/Tca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435594	56435594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	282	716	0	ENST00000407977.2:c.1543G>A	p.Gly515Arg	p.G515R	ENST00000407977		515	Ggg/Agg																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66511557	66511557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	106	280	0	ENST00000358598.2:c.17C>T	p.Thr6Ile	p.T6I	ENST00000358598	NM_212471.2	6	aCc/aTc																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66522054	66522054	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	84	202	0	ENST00000358598.2:c.708+1G>A		p.X236_splice	ENST00000358598	NM_212471.2	236																																																																																
RPTOR	57521	MSKCC	GRCh37	17	78796005	78796005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	218	543	0	ENST00000306801.3:c.895C>T	p.Pro299Ser	p.P299S	ENST00000306801	NM_020761.2	299	Cct/Tct																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2213861	2213861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	277	734	0	ENST00000398665.3:c.1673C>T	p.Ala558Val	p.A558V	ENST00000398665	NM_032482.2	558	gCg/gTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229660	5229660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	33	48	0	ENST00000357368.4:c.2191G>A	p.Ala731Thr	p.A731T	ENST00000357368	NM_002850.3	731	Gcg/Acg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170517	11170517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	300	781	0	ENST00000344626.4:c.4724G>A	p.Ser1575Asn	p.S1575N	ENST00000344626	NM_003072.3	1575	aGt/aAt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271723	15271723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	320	1030	1	ENST00000263388.2:c.6716C>T	p.Pro2239Leu	p.P2239L	ENST00000263388	NM_000435.2	2239	cCc/cTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291830	15291830	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1222604193		P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	263	879	2	ENST00000263388.2:c.2936C>T	p.Ala979Val	p.A979V	ENST00000263388	NM_000435.2	979	gCc/gTc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375315	15375315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	270	671	0	ENST00000263377.2:c.1112C>T	p.Ala371Val	p.A371V	ENST00000263377	NM_058243.2	371	gCc/gTc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273291	18273291	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	148	428	0	ENST00000222254.8:c.1084C>T	p.Gln362Ter	p.Q362*	ENST00000222254	NM_005027.3	362	Cag/Tag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18968337	18968337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	272	637	0	ENST00000262803.5:c.2177C>T	p.Thr726Ile	p.T726I	ENST00000262803	NM_002911.3	726	aCt/aTt																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257405	19257405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	334	860	1	ENST00000162023.5:c.728C>T	p.Pro243Leu	p.P243L	ENST00000162023		243	cCc/cTc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257429	19257429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	354	885	0	ENST00000162023.5:c.704C>T	p.Pro235Leu	p.P235L	ENST00000162023		235	cCc/cTc																																																																															
AXL	558	MSKCC	GRCh37	19	41725356	41725356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	266	829	1	ENST00000301178.4:c.59G>A	p.Cys20Tyr	p.C20Y	ENST00000301178	NM_021913.4	20	tGc/tAc																																																																															
AXL	558	MSKCC	GRCh37	19	41743885	41743885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	285	813	1	ENST00000301178.4:c.820G>A	p.Gly274Arg	p.G274R	ENST00000301178	NM_021913.4	274	Gga/Aga																																																																															
CIC	23152	MSKCC	GRCh37	19	42799332	42799332	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	131	329	0	ENST00000575354.2:c.4816A>G	p.Thr1606Ala	p.T1606A	ENST00000575354	NM_015125.3	1606	Aca/Gca																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45856036	45856036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	320	702	0	ENST00000391945.4:c.1870C>T	p.Pro624Ser	p.P624S	ENST00000391945	NM_000400.3	624	Ccc/Tcc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624933	9624933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	142	404	0	ENST00000353224.5:c.44C>T	p.Ser15Phe	p.S15F	ENST00000353224	NM_177990.2	15	tCc/tTc																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30253820	30253820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	250	550	0	ENST00000307677.4:c.634C>T	p.Arg212Cys	p.R212C	ENST00000307677	NM_138578.1	212	Cgc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40911147	40911147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	103	377	0	ENST00000373198.4:c.2158G>A	p.Val720Ile	p.V720I	ENST00000373198	NM_133170.3	720	Gtt/Att																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306665	41306665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	238	671	0	ENST00000373198.4:c.994G>A	p.Gly332Ser	p.G332S	ENST00000373198	NM_133170.3	332	Ggc/Agc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46275829	46275829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	146	435	0	ENST00000371998.3:c.3265G>A	p.Glu1089Lys	p.E1089K	ENST00000371998		1089	Gag/Aag																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62326482	62326482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1721	328	855	2	ENST00000508582.2:c.3479C>T	p.Thr1160Ile	p.T1160I	ENST00000508582		1160	aCc/aTc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36265248	36265248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	71	309	0	ENST00000300305.3:c.71G>A	p.Gly24Glu	p.G24E	ENST00000300305		24	gGa/gAa																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495753	72495753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	182	392	0	ENST00000477973.2:c.317C>T	p.Pro107Ser	p.P107S	ENST00000477973	NM_012234.5	107	Cct/Tct																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185165588	185165588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	17	310	0	ENST00000265026.3:c.863C>T	p.Thr288Ile	p.T288I	ENST00000265026	NM_004721.4	288	aCc/aTc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807494	1807494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	239	828	1	ENST00000260795.2:c.1663G>A	p.Val555Met	p.V555M	ENST00000260795		555	Gtg/Atg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189835	66189835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	136	388	0	ENST00000273854.3:c.3111G>T	p.Leu1037Phe	p.L1037F	ENST00000273854	NM_004439.5	1037	ttG/ttT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187554962	187554962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	117	326	0	ENST00000441802.2:c.4199G>A	p.Ser1400Asn	p.S1400N	ENST00000441802	NM_005245.3	1400	aGt/aAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584702	187584702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	166	460	0	ENST00000441802.2:c.3331G>A	p.Ala1111Thr	p.A1111T	ENST00000441802	NM_005245.3	1111	Gca/Aca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630750	187630750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	182	571	0	ENST00000441802.2:c.232G>A	p.Asp78Asn	p.D78N	ENST00000441802	NM_005245.3	78	Gac/Aac																																																																															
TERT	7015	MSKCC	GRCh37	5	1294589	1294589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	209	616	0	ENST00000310581.5:c.412G>A	p.Gly138Arg	p.G138R	ENST00000310581	NM_198253.2	138	Ggg/Agg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86633909	86633909	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	55	313	0	ENST00000274376.6:c.1017+1G>A		p.X339_splice	ENST00000274376	NM_002890.2	339																																																																																
CSF1R	1436	MSKCC	GRCh37	5	149436864	149436864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	162	586	0	ENST00000286301.3:c.2305C>T	p.Leu769Phe	p.L769F	ENST00000286301	NM_005211.3	769	Ctc/Ttc																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045714	26045714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	204	255	0	ENST00000540144.1:c.76G>A	p.Ala26Thr	p.A26T	ENST00000540144	NM_003531.2	26	Gcc/Acc																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27777945	27777945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	128	344	0	ENST00000369163.2:c.94G>A	p.Ala32Thr	p.A32T	ENST00000369163	NM_003536.2	32	Gcc/Acc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680494	30680494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	188	525	0	ENST00000376406.3:c.1225G>A	p.Glu409Lys	p.E409K	ENST00000376406	NM_014641.2	409	Gaa/Aaa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120341	94120341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	80	304	0	ENST00000369303.4:c.710G>A	p.Ser237Asn	p.S237N	ENST00000369303	NM_004440.3	237	aGt/aAt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710726	117710726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	114	353	0	ENST00000368508.3:c.1546G>A	p.Val516Ile	p.V516I	ENST00000368508	NM_002944.2	516	Gtc/Atc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520076	106520076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	65	207	0	ENST00000359195.3:c.2504G>A	p.Gly835Asp	p.G835D	ENST00000359195	NM_002649.2	835	gGt/gAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68982073	68982073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	103	567	0	ENST00000288368.4:c.1447G>A	p.Val483Ile	p.V483I	ENST00000288368	NM_024870.2	483	Gta/Ata																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045755	47045755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	275	810	1	ENST00000329236.7:c.2402G>T	p.Arg801Leu	p.R801L	ENST00000329236	NM_001204466.1	801	cGc/cTc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228207	53228207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	284	641	0	ENST00000375401.3:c.2195C>T	p.Ser732Phe	p.S732F	ENST00000375401	NM_004187.3	732	tCc/tTc																																																																															
MED12	9968	MSKCC	GRCh37	X	70352345	70352345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	231	605	0	ENST00000374080.3:c.4372G>A	p.Gly1458Ser	p.G1458S	ENST00000374080		1458	Ggt/Agt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257530	16257530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	125	406	0	ENST00000375759.3:c.4795G>A	p.Glu1599Lys	p.E1599K	ENST00000375759	NM_015001.2	1599	Gaa/Aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187525707	187525708	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	C			P-0039208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	138	351	0	ENST00000441802.2:c.10371_10372delinsG	p.Phe3457LeufsTer7	p.F3457Lfs*7	ENST00000441802	NM_005245.3	3457	ttCAgc/ttGgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	475	544	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	298	493	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577102	7577102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	413	741	1	ENST00000269305.4:c.836G>A	p.Gly279Glu	p.G279E	ENST00000269305	NM_001126112.2	279	gGg/gAg																																																																															
MED12	9968	MSKCC	GRCh37	X	70361743	70361744	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	426	410	1	ENST00000374080.3:c.6423dup	p.Leu2142AlafsTer23	p.L2142Afs*23	ENST00000374080		2140	cag/caGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0039389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	657	644	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175211	112175212	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	222	251	0	ENST00000257430.4:c.3924dup	p.Glu1309ArgfsTer6	p.E1309Rfs*6	ENST00000257430	NM_000038.5	1307	ata/atAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099397	27099397	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	162	590	0	ENST00000324856.7:c.3634C>T	p.Gln1212Ter	p.Q1212*	ENST00000324856	NM_006015.4	1212	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120016	70120016	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	183	152	0	ENST00000245479.2:c.1018C>T	p.Gln340Ter	p.Q340*	ENST00000245479	NM_000346.3	340	Cag/Tag																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115269668	115269668	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	137	597	0	ENST00000438362.2:c.1538A>T	p.Lys513Ile	p.K513I	ENST00000438362	NM_001242891.1	513	aAa/aTa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972683	25972683	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	495	480	0	ENST00000435504.4:c.1742G>T	p.Trp581Leu	p.W581L	ENST00000435504		581	tGg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	180	549	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0039390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	170	819	0	ENST00000269305.4:c.920-1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
STK40	83931	MSKCC	GRCh37	1	36823932	36823932	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs945529881		P-0039390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	94	822	2	ENST00000373129.3:c.250C>T	p.Arg84Trp	p.R84W	ENST00000373129	NM_032017.1	84	Cgg/Tgg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25964944	25964944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	153	617	0	ENST00000435504.4:c.4262G>T	p.Cys1421Phe	p.C1421F	ENST00000435504		1421	tGc/tTc																																																																															
IRF4	3662	MSKCC	GRCh37	6	393175	393175	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139884486		P-0039390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	140	581	0	ENST00000380956.4:c.23G>A	p.Arg8Gln	p.R8Q	ENST00000380956	NM_001195286.1	8	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0039399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	78	498	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120668	115120668	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	149	745	0	ENST00000257566.3:c.338G>C	p.Trp113Ser	p.W113S	ENST00000257566	NM_016569.3	113	tGg/tCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0039400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	49	523	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	93	596	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581275	48581306	+	frameshift_variant	Frame_Shift_Del	DEL	GACATACAGCACCCCAGCTCTGTTAGCCCCAT	GACATACAGCACCCCAGCTCTGTTAGCCCCAT	TTA			P-0039400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	50	505	2	ENST00000342988.3:c.579_610delinsTTA	p.Glu193AspfsTer3	p.E193Dfs*3	ENST00000342988	NM_005359.5	193	gaGACATACAGCACCCCAGCTCTGTTAGCCCCATct/gaTTAct																																																																															
BRAF	673	MSKCC	GRCh37	7	140507764	140507764	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	11	333	0	ENST00000288602.6:c.707A>C	p.Asn236Thr	p.N236T	ENST00000288602	NM_004333.4	236	aAc/aCc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86627234	86627238	+	frameshift_variant	Frame_Shift_Del	DEL	TTATC	TTATC	-			P-0039402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	87	398	0	ENST00000274376.6:c.613_617delCTTAT	p.Leu205LysfsTer4	p.L205Kfs*4	ENST00000274376	NM_002890.2	203	agTTATCtt/agtt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438067	49438067	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	104	685	1	ENST00000301067.7:c.5104C>T	p.Arg1702Ter	p.R1702*	ENST00000301067	NM_003482.3	1702	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720869	89720869	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	116	373	0	ENST00000371953.3:c.1023del	p.Phe341LeufsTer3	p.F341Lfs*3	ENST00000371953	NM_000314.4	340	aaT/aa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372252	55372252	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	119	633	0	ENST00000297316.4:c.942G>C	p.Gln314His	p.Q314H	ENST00000297316	NM_022454.3	314	caG/caC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	117	433	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	109	701	1	ENST00000269305.4:c.596G>A	p.Gly199Glu	p.G199E	ENST00000269305	NM_001126112.2	199	gGa/gAa																																																																															
ATM	472	MSKCC	GRCh37	11	108198384	108198384	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs148432863		P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	32	426	1	ENST00000278616.4:c.6988C>G	p.Leu2330Val	p.L2330V	ENST00000278616	NM_000051.3	2330	Cta/Gta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	175	762	0	ENST00000269305.4:c.880delG	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	294	Gag/ag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678476	88678476	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	47	643	1	ENST00000360948.2:c.1060C>A	p.Gln354Lys	p.Q354K	ENST00000360948	NM_001012338.2	354	Caa/Aaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49422910	49422910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	77	674	3	ENST00000301067.7:c.14185C>T	p.Arg4729Trp	p.R4729W	ENST00000301067	NM_003482.3	4729	Cgg/Tgg																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33446619	33446619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	39	601	0	ENST00000335858.7:c.14G>T	p.Arg5Met	p.R5M	ENST00000335858	NM_133629.2	5	aGg/aTg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749455	41749455	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	173	536	0	ENST00000226382.2:c.340G>T	p.Glu114Ter	p.E114*	ENST00000226382	NM_003924.3	114	Gaa/Taa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133901	55133901	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	28	339	0	ENST00000257290.5:c.1114G>T	p.Glu372Ter	p.E372*	ENST00000257290	NM_006206.4	372	Gaa/Taa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106547398	106547398	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	54	378	0	ENST00000369096.4:c.635A>T	p.Tyr212Phe	p.Y212F	ENST00000369096	NM_001198.3	212	tAt/tTt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163909	152163909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	41	481	1	ENST00000206249.3:c.630G>T	p.Lys210Asn	p.K210N	ENST00000206249	NM_000125.3	210	aaG/aaT																																																																															
CDK6	1021	MSKCC	GRCh37	7	92244602	92244602	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	38	286	0	ENST00000265734.4:c.835-2A>C		p.X279_splice	ENST00000265734	NM_001259.6	279																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8526641	8526641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	60	403	0	ENST00000356435.5:c.554G>T	p.Gly185Val	p.G185V	ENST00000356435		185	gGt/gTt																																																																															
BTK	695	MSKCC	GRCh37	X	100615121	100615121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	84	533	0	ENST00000308731.7:c.794C>A	p.Pro265His	p.P265H	ENST00000308731	NM_000061.2	265	cCt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	344	773	3	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0039427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	80	228	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	243	529	7	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112162834	112162834	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	148	370	0	ENST00000257430.4:c.1438C>T	p.Gln480Ter	p.Q480*	ENST00000257430	NM_000038.5	480	Caa/Taa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10248608	10248608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	290	688	10	ENST00000340748.4:c.4145C>T	p.Ser1382Leu	p.S1382L	ENST00000340748		1382	tCg/tTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573544	48573544	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	132	268	0	ENST00000342988.3:c.128T>G	p.Leu43Trp	p.L43W	ENST00000342988	NM_005359.5	43	tTg/tGg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	39	245	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0039473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	174	585	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
APC	324	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	19	423	0	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589663	67589663	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0039473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	34	272	0	ENST00000274335.5:c.1425+1G>T		p.X475_splice	ENST00000274335		475																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38061593	38061622	+	inframe_deletion	In_Frame_Del	DEL	GGCCGCGTAGGGGCCCAGGCCATTCATGGA	GGCCGCGTAGGGGCCCAGGCCATTCATGGA	-			P-0039473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	126	387	0	ENST00000250448.2:c.367_396del	p.Ser123_Ala132del	p.S123_A132del	ENST00000250448	NM_004496.3	123	TCCATGAATGGCCTGGGCCCCTACGCGGCC/-																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0039498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	69	394	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0039498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	154	917	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274045	10274045	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	56	1129	0	ENST00000330684.3:c.224A>T	p.Asn75Ile	p.N75I	ENST00000330684	NM_001134407.1	75	aAc/aTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183298	56183298	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	16	573	0	ENST00000399503.3:c.4208G>C	p.Gly1403Ala	p.G1403A	ENST00000399503	NM_005921.1	1403	gGa/gCa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061447	38061448	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0039499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	12	672	0	ENST00000250448.2:c.541_542del	p.Met181GlyfsTer45	p.M181Gfs*45	ENST00000250448	NM_004496.3	181	ATg/g																																																																															
RYBP	23429	MSKCC	GRCh37	3	72428401	72428401	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0039499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	36	481	0	ENST00000477973.2:c.600+1G>T		p.X200_splice	ENST00000477973	NM_012234.5	200																																																																																
KMT2C	58508	MSKCC	GRCh37	7	152132711	152132714	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TTCT	TTCT	-			P-0039499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	19	216	0	ENST00000262189.6:c.158_161del	p.Lys53AsnfsTer51	p.K53Nfs*51	ENST00000262189	NM_170606.2	53	aAGAAa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0039509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	208	865	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0039509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	194	806	0	ENST00000269305.4:c.919+1G>C		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0039510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	117	466	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974770	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCCGT			P-0039510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	33	294	0	ENST00000304494.5:c.52_57dup	p.Thr18_Ala19dup	p.T18_A19dup	ENST00000304494	NM_000077.4	18	-/ACGGCC																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435311	56435311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	138	658	1	ENST00000407977.2:c.1826G>A	p.Arg609Gln	p.R609Q	ENST00000407977		609	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0039510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	169	886	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713702	30713721	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTGGGAGGACCTGCGCAA	AGCTGGGAGGACCTGCGCAA	-			P-0039510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	105	601	0	ENST00000359013.4:c.1102_1121del	p.Ser368AlafsTer15	p.S368Afs*15	ENST00000359013	NM_001024847.2	368	AGCTGGGAGGACCTGCGCAAg/g																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002042-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	103	283	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023720	27023720	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002042-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			685	246	229	0	ENST00000324856.7:c.826G>T	p.Gly276Ter	p.G276*	ENST00000324856	NM_006015.4	276	Gga/Tga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643329	52643329	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002042-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	107	324	0	ENST00000394830.3:c.2567G>A	p.Arg856Gln	p.R856Q	ENST00000394830	NM_018313.4	856	cGg/cAg																																																																															
ATM	472	MSKCC	GRCh37	11	108202187	108202187	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002042-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	132	249	0	ENST00000278616.4:c.7532T>C	p.Ile2511Thr	p.I2511T	ENST00000278616	NM_000051.3	2511	aTt/aCt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12037441	12037441	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002042-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1072	216	286	0	ENST00000396373.4:c.1072A>G	p.Ile358Val	p.I358V	ENST00000396373	NM_001987.4	358	Atc/Gtc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421833	49421833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002042-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			972	57	342	1	ENST00000301067.7:c.14474G>A	p.Arg4825Gln	p.R4825Q	ENST00000301067	NM_003482.3	4825	cGg/cAg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473653	67473653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002042-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	284	367	0	ENST00000327367.4:c.733G>A	p.Gly245Arg	p.G245R	ENST00000327367	NM_005902.3	245	Ggg/Agg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220116	5220116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002042-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	72	244	0	ENST00000357368.4:c.3599G>A	p.Arg1200His	p.R1200H	ENST00000357368	NM_002850.3	1200	cGt/cAt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368195	45368206	+	coding_sequence_variant,3_prime_UTR_variant	In_Frame_Del	DEL	GCTTTATGACAT	GCTTTATGACAT	-			P-0002042-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	218	276	1	ENST00000262160.6:c.1396_*3delATGTCATAAAGC		p.*466*	ENST00000262160	NM_005901.5	466																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0002042-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			681	608	343	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431394	121431394	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193922598		P-0002273-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	110	278	0	ENST00000257555.6:c.598C>T	p.Arg200Trp	p.R200W	ENST00000257555		200	Cgg/Tgg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680740	88680740	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002273-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			471	81	449	0	ENST00000360948.2:c.517C>G	p.Leu173Val	p.L173V	ENST00000360948	NM_001012338.2	173	Ctc/Gtc																																																																															
ATM	472	MSKCC	GRCh37	11	108123639	108123639	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0002273-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	77	285	0	ENST00000278616.4:c.1898+1del		p.C633fs	ENST00000278616	NM_000051.3	633	tGt/tt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118354974	118354974	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	44	316	0	ENST00000534358.1:c.4163G>T	p.Ser1388Ile	p.S1388I	ENST00000534358	NM_005933.3	1388	aGt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	289	705	0	ENST00000269305.4:c.497C>A	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tAa																																																																															
TET1	80312	MSKCC	GRCh37	10	70451092	70451092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	221	547	0	ENST00000373644.4:c.5932G>A	p.Asp1978Asn	p.D1978N	ENST00000373644	NM_030625.2	1978	Gac/Aac																																																																															
WT1	7490	MSKCC	GRCh37	11	32456665	32456665	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	75	222	0	ENST00000332351.3:c.227T>A	p.Leu76Gln	p.L76Q	ENST00000332351	NM_024426.4	76	cTg/cAg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620451	52620451	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	93	357	0	ENST00000394830.3:c.3302A>G	p.Asn1101Ser	p.N1101S	ENST00000394830	NM_018313.4	1101	aAc/aGc																																																																															
BCL6	604	MSKCC	GRCh37	3	187443348	187443348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	155	342	0	ENST00000232014.4:c.1778C>T	p.Thr593Ile	p.T593I	ENST00000232014	NM_001130845.1	593	aCt/aTt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520262	176520262	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	188	610	0	ENST00000292408.4:c.1181C>G	p.Ala394Gly	p.A394G	ENST00000292408	NM_213647.1	394	gCg/gGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240748	55240748	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	168	711	0	ENST00000275493.2:c.1992C>G	p.Ile664Met	p.I664M	ENST00000275493	NM_005228.3	664	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0039118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	489	525	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425358	49425358	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	516	622	2	ENST00000301067.7:c.13130G>A	p.Trp4377Ter	p.W4377*	ENST00000301067	NM_003482.3	4377	tGg/tAg																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66511574	66511574	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	264	234	0	ENST00000358598.2:c.34G>T	p.Ala12Ser	p.A12S	ENST00000358598	NM_212471.2	12	Gca/Tca																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38148037	38148038	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	A			P-0039118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	390	480	0	ENST00000317025.8:c.3073_3074delinsT	p.Phe1026LeufsTer26	p.F1026Lfs*26	ENST00000317025	NM_023034.1	1025	AGc/Tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0039121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	31	463	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0039272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	83	644	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0039272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	55	542	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0039272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	32	278	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577579	7577579	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	54	630	0	ENST00000269305.4:c.702C>G	p.Tyr234Ter	p.Y234*	ENST00000269305	NM_001126112.2	234	taC/taG																																																																															
EP300	2033	MSKCC	GRCh37	22	41489040	41489040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	80	566	0	ENST00000263253.7:c.32C>T	p.Pro11Leu	p.P11L	ENST00000263253	NM_001429.3	11	cCt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0039274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	189	670	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0039274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	201	433	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952088	178952088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	201	433	1	ENST00000263967.3:c.3143A>G	p.His1048Arg	p.H1048R	ENST00000263967	NM_006218.2	1048	cAt/cGt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44732943	44732943	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	106	492	0	ENST00000377967.4:c.146T>G	p.Leu49Arg	p.L49R	ENST00000377967	NM_021140.2	49	cTc/cGc																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111907693	111907697	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAC	GAGAC	-			P-0039274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	100	447	0	ENST00000393256.3:c.470_474del	p.Asp157ValfsTer2	p.D157Vfs*2	ENST00000393256	NM_006538.4	156	gGAGAC/g																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	202	605	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
CIC	23152	MSKCC	GRCh37	19	42794583	42794583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	259	752	2	ENST00000575354.2:c.1663G>A	p.Gly555Arg	p.G555R	ENST00000575354	NM_015125.3	555	Gga/Aga																																																																															
JUN	3725	MSKCC	GRCh37	1	59248124	59248124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	74	198	0	ENST00000371222.2:c.619C>T	p.Pro207Ser	p.P207S	ENST00000371222	NM_002228.3	207	Ccg/Tcg																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246093197	246093197	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	343	565	0	ENST00000388985.4:c.574G>T	p.Glu192Ter	p.E192*	ENST00000388985		192	Gaa/Taa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111459	8111496	+	frameshift_variant	Frame_Shift_Del	DEL	GTCCTGTGCGAACTGTCAGACCACCACAACCACACTCT	GTCCTGTGCGAACTGTCAGACCACCACAACCACACTCT	-			P-0039276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	169	572	0	ENST00000346208.3:c.946_983del	p.Ser316GlufsTer23	p.S316Efs*23	ENST00000346208		315	acGTCCTGTGCGAACTGTCAGACCACCACAACCACACTCTgg/acgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913879	32914629	+	frameshift_variant	Frame_Shift_Del	DEL	ATGCAAATGCATACCCACAAACTGTAAATGAAGATATTTGCGTTGAGGAACTTGTGACTAGCTCTTCACCCTGCAAAAATAAAAATGCAGCCATTAAATTGTCCATATCTAATAGTAATAATTTTGAGGTAGGGCCACCTGCATTTAGGATAGCCAGTGGTAAAATCGTTTGTGTTTCACATGAAACAATTAAAAAAGTGAAAGACATATTTACAGACAGTTTCAGTAAAGTAATTAAGGAAAACAACGAGAATAAATCAAAAATTTGCCAAACGAAAATTATGGCAGGTTGTTACGAGGCATTGGATGATTCAGAGGATATTCTTCATAACTCTCTAGATAATGATGAATGTAGCACGCATTCACATAAGGTTTTTGCTGACATTCAGAGTGAAGAAATTTTACAACATAACCAAAATATGTCTGGATTGGAGAAAGTTTCTAAAATATCACCTTGTGATGTTAGTTTGGAAACTTCAGATATATGTAAATGTAGTATAGGGAAGCTTCATAAGTCAGTCTCATCTGCAAATACTTGTGGGATTTTTAGCACAGCAAGTGGAAAATCTGTCCAGGTATCAGATGCTTCATTACAAAACGCAAGACAAGTGTTTTCTGAAATAGAAGATAGTACCAAGCAAGTCTTTTCCAAAGTATTGTTTAAAAGTAACGAACATTCAGACCAGCTCACAAGAGAAGAAAATACTGCTATACGTACTCCAGAACATTTAATATCCCAAAAAGGCTTTTC	ATGCAAATGCATACCCACAAACTGTAAATGAAGATATTTGCGTTGAGGAACTTGTGACTAGCTCTTCACCCTGCAAAAATAAAAATGCAGCCATTAAATTGTCCATATCTAATAGTAATAATTTTGAGGTAGGGCCACCTGCATTTAGGATAGCCAGTGGTAAAATCGTTTGTGTTTCACATGAAACAATTAAAAAAGTGAAAGACATATTTACAGACAGTTTCAGTAAAGTAATTAAGGAAAACAACGAGAATAAATCAAAAATTTGCCAAACGAAAATTATGGCAGGTTGTTACGAGGCATTGGATGATTCAGAGGATATTCTTCATAACTCTCTAGATAATGATGAATGTAGCACGCATTCACATAAGGTTTTTGCTGACATTCAGAGTGAAGAAATTTTACAACATAACCAAAATATGTCTGGATTGGAGAAAGTTTCTAAAATATCACCTTGTGATGTTAGTTTGGAAACTTCAGATATATGTAAATGTAGTATAGGGAAGCTTCATAAGTCAGTCTCATCTGCAAATACTTGTGGGATTTTTAGCACAGCAAGTGGAAAATCTGTCCAGGTATCAGATGCTTCATTACAAAACGCAAGACAAGTGTTTTCTGAAATAGAAGATAGTACCAAGCAAGTCTTTTCCAAAGTATTGTTTAAAAGTAACGAACATTCAGACCAGCTCACAAGAGAAGAAAATACTGCTATACGTACTCCAGAACATTTAATATCCCAAAAAGGCTTTTC	-			P-0039276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	84	489	0	ENST00000380152.3:c.5389_6139del	p.Ala1797IlefsTer4	p.A1797Ifs*4	ENST00000380152		1796	gATGCAAATGCATACCCACAAACTGTAAATGAAGATATTTGCGTTGAGGAACTTGTGACTAGCTCTTCACCCTGCAAAAATAAAAATGCAGCCATTAAATTGTCCATATCTAATAGTAATAATTTTGAGGTAGGGCCACCTGCATTTAGGATAGCCAGTGGTAAAATCGTTTGTGTTTCACATGAAACAATTAAAAAAGTGAAAGACATATTTACAGACAGTTTCAGTAAAGTAATTAAGGAAAACAACGAGAATAAATCAAAAATTTGCCAAACGAAAATTATGGCAGGTTGTTACGAGGCATTGGATGATTCAGAGGATATTCTTCATAACTCTCTAGATAATGATGAATGTAGCACGCATTCACATAAGGTTTTTGCTGACATTCAGAGTGAAGAAATTTTACAACATAACCAAAATATGTCTGGATTGGAGAAAGTTTCTAAAATATCACCTTGTGATGTTAGTTTGGAAACTTCAGATATATGTAAATGTAGTATAGGGAAGCTTCATAAGTCAGTCTCATCTGCAAATACTTGTGGGATTTTTAGCACAGCAAGTGGAAAATCTGTCCAGGTATCAGATGCTTCATTACAAAACGCAAGACAAGTGTTTTCTGAAATAGAAGATAGTACCAAGCAAGTCTTTTCCAAAGTATTGTTTAAAAGTAACGAACATTCAGACCAGCTCACAAGAGAAGAAAATACTGCTATACGTACTCCAGAACATTTAATATCCCAAAAAGGCTTTTCa/ga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32915017	32915018	+	inframe_insertion	In_Frame_Ins	INS	-	-	AACAAA			P-0039276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	96	541	0	ENST00000380152.3:c.6529_6530insAAAACA	p.Asn2176_Ile2177insLysAsn	p.N2176_I2177insKN	ENST00000380152		2175	-/AACAAA																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066936	30066936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	134	454	0	ENST00000331968.5:c.2195G>A	p.Arg732Gln	p.R732Q	ENST00000331968	NM_002742.2	732	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603132	48603549	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAGCTCCAGCTATCAGTAAGTATGCTTTTCATTCTTTTTTAAAGGTATAATAGTTGATATTTTTATCTTGATTTACTCAGTTGATTAGTTTCTTTGAGCAGTAATAGAAATTAAAGTTTTTTTTTACTGGGATGATGACATTTTTGAATTGGTAAAATCTGTTCTTCTGTAATAGTTGCTTTTTGCCTATGACCCTGTTTGCATTCTTTTTGTATCAAAAATGGAGTATGGGATGAAGGAGAAAGGGGATGATTATTATATTATACTGTTCTATCTCCTCCTTTTTTGTTGATGCTTATTATAATTCTGCCTCACCAGCCAGGGTGGGTTGTAATCACTGAAGTGCTTGGCTTTATTCTAGTAAGGAAAGCATATTTCAATTTCAGAATTGGACACTTTTCCAATTTTTTTTTTAAAG	TAGCTCCAGCTATCAGTAAGTATGCTTTTCATTCTTTTTTAAAGGTATAATAGTTGATATTTTTATCTTGATTTACTCAGTTGATTAGTTTCTTTGAGCAGTAATAGAAATTAAAGTTTTTTTTTACTGGGATGATGACATTTTTGAATTGGTAAAATCTGTTCTTCTGTAATAGTTGCTTTTTGCCTATGACCCTGTTTGCATTCTTTTTGTATCAAAAATGGAGTATGGGATGAAGGAGAAAGGGGATGATTATTATATTATACTGTTCTATCTCCTCCTTTTTTGTTGATGCTTATTATAATTCTGCCTCACCAGCCAGGGTGGGTTGTAATCACTGAAGTGCTTGGCTTTATTCTAGTAAGGAAAGCATATTTCAATTTCAGAATTGGACACTTTTCCAATTTTTTTTTTAAAG	-			P-0039276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	111	532	0	ENST00000342988.3:c.1435_1447+405del		p.X479_splice	ENST00000342988	NM_005359.5	479																																																																																
RTEL1	51750	MSKCC	GRCh37	20	62321646	62321646	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0039276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	243	650	0	ENST00000508582.2:c.2338-1G>C		p.X780_splice	ENST00000508582		780																																																																																
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	355	588	1	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72076812	72076812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	113	404	0	ENST00000357731.5:c.685G>A	p.Glu229Lys	p.E229K	ENST00000357731	NM_173808.2	229	Gaa/Aaa																																																																															
RB1	5925	MSKCC	GRCh37	13	48919214	48919214	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0039277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	53	84	0	ENST00000267163.4:c.381-2A>T		p.X127_splice	ENST00000267163	NM_000321.2	127																																																																																
PTCH1	5727	MSKCC	GRCh37	9	98242701	98242701	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	321	433	0	ENST00000331920.6:c.916G>T	p.Ala306Ser	p.A306S	ENST00000331920	NM_000264.3	306	Gcc/Tcc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508424	106508424	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	94	319	0	ENST00000359195.3:c.418C>G	p.Arg140Gly	p.R140G	ENST00000359195	NM_002649.2	140	Cgg/Ggg																																																																															
TET2	54790	MSKCC	GRCh37	4	106156790	106156790	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	173	467	0	ENST00000380013.4:c.1691G>A	p.Trp564Ter	p.W564*	ENST00000380013	NM_001127208.2	564	tGg/tAg																																																																															
PGR	5241	MSKCC	GRCh37	11	100996746	100996746	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	76	428	0	ENST00000325455.5:c.1781C>A	p.Ala594Glu	p.A594E	ENST00000325455	NM_001202474.3	594	gCa/gAa																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36989309	36989309	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	165	475	0	ENST00000354822.5:c.26C>A	p.Ala9Glu	p.A9E	ENST00000354822	NM_001079668.2	9	gCg/gAg																																																																															
BLM	641	MSKCC	GRCh37	15	91304171	91304171	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	155	468	0	ENST00000355112.3:c.1568A>G	p.Asn523Ser	p.N523S	ENST00000355112	NM_000057.2	523	aAt/aGt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032222	10032222	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	197	654	0	ENST00000330684.3:c.601C>A	p.Gln201Lys	p.Q201K	ENST00000330684	NM_001134407.1	201	Cag/Aag																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99160440	99160440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	213	478	0	ENST00000074304.5:c.919G>C	p.Glu307Gln	p.E307Q	ENST00000074304	NM_001134224.1	307	Gag/Cag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098973	178098973	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	74	243	0	ENST00000397062.3:c.72G>T	p.Trp24Cys	p.W24C	ENST00000397062	NM_006164.4	24	tgG/tgT																																																																															
RAF1	5894	MSKCC	GRCh37	3	12647738	12647738	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	124	417	0	ENST00000251849.4:c.642G>T	p.Met214Ile	p.M214I	ENST00000251849	NM_002880.3	214	atG/atT																																																																															
TET2	54790	MSKCC	GRCh37	4	106164788	106164788	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	182	551	0	ENST00000380013.4:c.3656A>T	p.His1219Leu	p.H1219L	ENST00000380013	NM_001127208.2	1219	cAc/cTc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38982054	38982054	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	124	454	0	ENST00000357387.3:c.668T>C	p.Ile223Thr	p.I223T	ENST00000357387	NM_152756.3	223	aTa/aCa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879335	151879335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	153	455	0	ENST00000262189.6:c.5610G>T	p.Gln1870His	p.Q1870H	ENST00000262189	NM_170606.2	1870	caG/caT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	51	477	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89845356	89845356	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	166	811	0	ENST00000389301.3:c.1771C>G	p.Arg591Gly	p.R591G	ENST00000389301	NM_000135.2	591	Cga/Gga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960140	134960140	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0039278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	86	571	0	ENST00000398015.3:c.2496+1G>T		p.X832_splice	ENST00000398015	NM_004441.4	832																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31437397	31437397	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	111	659	0	ENST00000344624.3:c.2891A>G	p.His964Arg	p.H964R	ENST00000344624		964	cAc/cGc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039906	47039906	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0039278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	136	729	0	ENST00000329236.7:c.1014+1G>A		p.X338_splice	ENST00000329236	NM_001204466.1	338																																																																																
MET	4233	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0039279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	77	645	0	ENST00000397752.3:c.3028+3A>G		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0039282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	182	583	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589586	67589591	+	inframe_deletion	In_Frame_Del	DEL	ATGAAT	ATGAAT	-			P-0039282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	40	260	0	ENST00000274335.5:c.1351_1356del	p.Glu451_Tyr452del	p.E451_Y452del	ENST00000274335		450	cATGAATat/cat																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692886	89692886	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	43	347	0	ENST00000371953.3:c.370T>A	p.Cys124Ser	p.C124S	ENST00000371953	NM_000314.4	124	Tgt/Agt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685314	89685314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0039282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	75	278	0	ENST00000371953.3:c.209T>G	p.Leu70Arg	p.L70R	ENST00000371953	NM_000314.4	70	cTt/cGt																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281875	49281875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	192	589	0	ENST00000282018.3:c.922G>A	p.Ala308Thr	p.A308T	ENST00000282018	NM_020377.2	308	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7574033	7574033	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0039282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	194	565	0	ENST00000269305.4:c.994A>T	p.Ile332Phe	p.I332F	ENST00000269305	NM_001126112.2	332	Atc/Ttc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591860	48591861	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCTTCAAGCTGCCCTATTGTTACTGTTGATGGATACGTGGAC			P-0039282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	94	458	0	ENST00000342988.3:c.1029_1070dup	p.Ser344_Ser357dup	p.S344_S357dup	ENST00000342988	NM_005359.5	344	-/CCTTCAAGCTGCCCTATTGTTACTGTTGATGGATACGTGGAC																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197267	26197267	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	51	471	0	ENST00000356476.2:c.212T>A	p.Leu71Gln	p.L71Q	ENST00000356476		71	cTa/cAa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53230783	53230783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	193	723	0	ENST00000375401.3:c.2010G>A	p.Met670Ile	p.M670I	ENST00000375401	NM_004187.3	670	atG/atA																																																																															
XIAP	331	MSKCC	GRCh37	X	123020324	123020325	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	89	500	0	ENST00000355640.3:c.816dup	p.Gly273TrpfsTer8	p.G273Wfs*8	ENST00000355640		271	act/acTt																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152860076	152860076	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	63	713	0	ENST00000406277.2:c.352A>T	p.Ser118Cys	p.S118C	ENST00000406277	NM_152274.4	118	Agc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	85	375	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	108	289	1	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161222	56161222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	92	411	1	ENST00000399503.3:c.1091G>A	p.Arg364Gln	p.R364Q	ENST00000399503	NM_005921.1	364	cGg/cAg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332337	70332337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	79	445	0	ENST00000373644.4:c.242G>A	p.Arg81His	p.R81H	ENST00000373644	NM_030625.2	81	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	272	637	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65323365	65323365	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	116	480	0	ENST00000342505.4:c.1432A>G	p.Thr478Ala	p.T478A	ENST00000342505	NM_002227.2	478	Acc/Gcc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	100	351	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	138	649	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
ESR1	2099	MSKCC	GRCh37	6	152201874	152201874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	67	381	1	ENST00000206249.3:c.728G>A	p.Arg243His	p.R243H	ENST00000206249	NM_000125.3	243	cGt/cAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	90	515	1	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	142	550	4	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	61	655	1	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966688	36966688	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137870876		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	88	437	2	ENST00000358127.4:c.638C>T	p.Ser213Leu	p.S213L	ENST00000358127	NM_001280556.1	213	tCg/tTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	40	265	0	ENST00000375687.4:c.1933_1934dup	p.Gly646ValfsTer58	p.G646Vfs*58	ENST00000375687	NM_015338.5	642	-/GG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55211097	55211097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	100	471	0	ENST00000275493.2:c.340G>A	p.Glu114Lys	p.E114K	ENST00000275493	NM_005228.3	114	Gaa/Aaa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	125	657	2	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
CASP8	841	MSKCC	GRCh37	2	202141631	202141631	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs17860424		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	47	391	0	ENST00000358485.4:c.919C>T	p.Arg307Trp	p.R307W	ENST00000358485	NM_001080125.1	307	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578245	7578245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	139	554	0	ENST00000269305.4:c.604C>T	p.Arg202Cys	p.R202C	ENST00000269305	NM_001126112.2	202	Cgt/Tgt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778603	3778603	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147448293		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	113	489	0	ENST00000262367.5:c.6445G>A	p.Val2149Met	p.V2149M	ENST00000262367	NM_004380.2	2149	Gtg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822585	72822586	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	77	456	0	ENST00000268489.5:c.9589dupC	p.Gln3197ProfsTer42	p.Q3197Pfs*42	ENST00000268489	NM_006885.3	3197	cag/cCag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	144	578	1	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	116	402	3	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	86	423	4	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																															
ATRX	546	MSKCC	GRCh37	X	76939673	76939674	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	26	320	0	ENST00000373344.5:c.1074dupA	p.Leu359ThrfsTer3	p.L359Tfs*3	ENST00000373344	NM_000489.3	358	-/A																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	105	449	2	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81990331	81990331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	132	448	0	ENST00000359376.3:c.3602G>A	p.Arg1201His	p.R1201H	ENST00000359376	NM_002661.3	1201	cGc/cAc																																																																															
B2M	567	MSKCC	GRCh37	15	45007901	45007901	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	59	288	0	ENST00000558401.1:c.346+2T>C		p.X116_splice	ENST00000558401	NM_004048.2	116																																																																																
SOX17	64321	MSKCC	GRCh37	8	55371942	55371942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	93	353	1	ENST00000297316.4:c.632C>T	p.Ala211Val	p.A211V	ENST00000297316	NM_022454.3	211	gCg/gTg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885467	111885467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	90	507	0	ENST00000341259.2:c.1244G>A	p.Arg415His	p.R415H	ENST00000341259	NM_005475.2	415	cGc/cAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637121	176637122	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	112	482	0	ENST00000439151.2:c.1727dup	p.Asn576LysfsTer8	p.N576Kfs*8	ENST00000439151	NM_022455.4	574	gga/ggAa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67646013	67646014	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	91	364	4	ENST00000264010.4:c.950_951delCA	p.Thr317ArgfsTer91	p.T317Rfs*91	ENST00000264010	NM_006565.3	314	aAC/a																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435597	110435597	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762535630		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	99	413	0	ENST00000375856.3:c.2804C>T	p.Ala935Val	p.A935V	ENST00000375856	NM_003749.2	935	gCg/gTg																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858279	27858279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	112	509	0	ENST00000359303.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000359303	NM_003535.2	98	Gag/Aag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829454	72829454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	103	515	0	ENST00000268489.5:c.7127C>T	p.Thr2376Met	p.T2376M	ENST00000268489	NM_006885.3	2376	aCg/aTg																																																																															
GNA11	2767	MSKCC	GRCh37	19	3118954	3118954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	144	650	0	ENST00000078429.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000078429	NM_002067.2	213	cGg/cAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411416	63411416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	123	294	0	ENST00000330258.3:c.1751G>A	p.Arg584His	p.R584H	ENST00000330258	NM_152424.3	584	cGt/cAt																																																																															
STK40	83931	MSKCC	GRCh37	1	36821030	36821030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	110	455	0	ENST00000373129.3:c.347G>A	p.Arg116His	p.R116H	ENST00000373129	NM_032017.1	116	cGc/cAc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942125	81942125	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	125	552	0	ENST00000359376.3:c.1667del	p.Gly556AlafsTer42	p.G556Afs*42	ENST00000359376	NM_002661.3	554	acG/ac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827892	40827892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	95	417	0	ENST00000373198.4:c.2536G>A	p.Val846Ile	p.V846I	ENST00000373198	NM_133170.3	846	Gtc/Atc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	87	433	4	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	49	559	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39609394	39609394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	79	329	0	ENST00000262039.4:c.1696C>T	p.Arg566Cys	p.R566C	ENST00000262039	NM_002647.2	566	Cgt/Tgt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137075	64137075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	64	498	0	ENST00000334205.4:c.1586G>A	p.Arg529His	p.R529H	ENST00000334205	NM_003942.2	529	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	120	702	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84391358	84391358	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	48	472	0	ENST00000321945.7:c.474del	p.Gly159AspfsTer8	p.G159Dfs*8	ENST00000321945	NM_139076.2	158	aaA/aa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353974	15353974	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	35	185	0	ENST00000263377.2:c.2906A>T	p.Gln969Leu	p.Q969L	ENST00000263377	NM_058243.2	969	cAg/cTg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45651306	45651307	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	100	550	0	ENST00000407780.3:c.718_719delGA	p.Asp240GlnfsTer81	p.D240Qfs*81	ENST00000407780	NM_001283052.1	240	GAc/c																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808391	1808391	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17882190		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	110	765	2	ENST00000260795.2:c.2149G>A	p.Ala717Thr	p.A717T	ENST00000260795		717	Gcc/Acc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906394	50906394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	67	598	0	ENST00000440232.2:c.1055G>A	p.Arg352His	p.R352H	ENST00000440232	NM_002691.3	352	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56434942	56434942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	127	616	1	ENST00000407977.2:c.2195G>A	p.Arg732His	p.R732H	ENST00000407977		732	cGc/cAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11317189	11317189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	135	472	0	ENST00000361445.4:c.305C>T	p.Thr102Ile	p.T102I	ENST00000361445	NM_004958.3	102	aCc/aTc																																																																															
CCND2	894	MSKCC	GRCh37	12	4398043	4398043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	121	486	0	ENST00000261254.3:c.607G>A	p.Ala203Thr	p.A203T	ENST00000261254	NM_001759.3	203	Gca/Aca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187527348	187527348	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs184300563		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	57	414	0	ENST00000441802.2:c.10226C>T	p.Thr3409Met	p.T3409M	ENST00000441802	NM_005245.3	3409	aCg/aTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970916	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	117	537	0	ENST00000265081.6:c.1147_1148del	p.Lys383GlyfsTer20	p.K383Gfs*20	ENST00000265081	NM_002439.4	381	AAa/a																																																																															
AXIN1	8312	MSKCC	GRCh37	16	338208	338208	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	135	659	0	ENST00000262320.3:c.2503del	p.Val835TrpfsTer103	p.V835Wfs*103	ENST00000262320	NM_003502.3	835	Gtg/tg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108330	8108330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	106	570	0	ENST00000585124.1:c.894G>A	p.Met298Ile	p.M298I	ENST00000585124	NM_004217.3	298	atG/atA																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918709	50918709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	137	447	0	ENST00000440232.2:c.2579C>T	p.Ala860Val	p.A860V	ENST00000440232	NM_002691.3	860	gCg/gTg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	422242	422242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	105	465	0	ENST00000399788.2:c.3016G>A	p.Ala1006Thr	p.A1006T	ENST00000399788	NM_001042603.1	1006	Gct/Act																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654615	67654615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	129	410	1	ENST00000264010.4:c.1102C>T	p.Arg368Cys	p.R368C	ENST00000264010	NM_006565.3	368	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094450	27094450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	113	489	0	ENST00000324856.7:c.3158G>A	p.Arg1053His	p.R1053H	ENST00000324856	NM_006015.4	1053	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224183	36224183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	57	569	1	ENST00000222270.7:c.6733G>A	p.Val2245Met	p.V2245M	ENST00000222270	NM_014727.1	2245	Gtg/Atg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933047	39933047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	124	372	0	ENST00000378444.4:c.1552G>A	p.Glu518Lys	p.E518K	ENST00000378444	NM_001123385.1	518	Gaa/Aaa																																																																															
HRAS	3265	MSKCC	GRCh37	11	533536	533536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	137	650	0	ENST00000311189.7:c.367C>T	p.Arg123Cys	p.R123C	ENST00000311189		123	Cgc/Tgc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798439	32798439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	163	661	2	ENST00000374899.4:c.1417G>A	p.Val473Ile	p.V473I	ENST00000374899	NM_018833.2	473	Gtc/Atc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73335545	73335546	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	100	303	0	ENST00000377767.4:c.2625dup	p.Glu876Ter	p.E876*	ENST00000377767	NM_014953.3	875	-/T																																																																															
SMO	6608	MSKCC	GRCh37	7	128851985	128851985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	141	616	0	ENST00000249373.3:c.2057C>T	p.Ala686Val	p.A686V	ENST00000249373	NM_005631.4	686	gCg/gTg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14022037	14022037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	107	469	0	ENST00000311895.7:c.737C>T	p.Ser246Leu	p.S246L	ENST00000311895	NM_005236.2	246	tCg/tTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939788	71939788	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	67	568	0	ENST00000298229.2:c.419del	p.Pro140ArgfsTer39	p.P140Rfs*39	ENST00000298229	NM_001567.3	139	Ccc/cc																																																																															
RB1	5925	MSKCC	GRCh37	13	48941695	48941696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	48	263	0	ENST00000267163.4:c.1010dup	p.Leu337PhefsTer4	p.L337Ffs*4	ENST00000267163	NM_000321.2	335	-/T																																																																															
APC	324	MSKCC	GRCh37	5	112137003	112137003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	91	365	0	ENST00000257430.4:c.757G>A	p.Gly253Ser	p.G253S	ENST00000257430	NM_000038.5	253	Ggc/Agc																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538882	23538882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	107	431	0	ENST00000380871.4:c.557C>T	p.Ser186Leu	p.S186L	ENST00000380871	NM_006167.3	186	tCg/tTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254932	16254932	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138206879		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	85	457	0	ENST00000375759.3:c.2197C>T	p.Arg733Cys	p.R733C	ENST00000375759	NM_015001.2	733	Cgt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256529	16256529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	163	547	1	ENST00000375759.3:c.3794G>A	p.Arg1265Gln	p.R1265Q	ENST00000375759	NM_015001.2	1265	cGa/cAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056334	27056334	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs541301347		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	97	346	0	ENST00000324856.7:c.1330G>A	p.Gly444Ser	p.G444S	ENST00000324856	NM_006015.4	444	Ggc/Agc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100865	27100865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	124	481	0	ENST00000324856.7:c.4147C>T	p.Arg1383Trp	p.R1383W	ENST00000324856	NM_006015.4	1383	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	109	548	0	ENST00000324856.7:c.4550C>T	p.Ala1517Val	p.A1517V	ENST00000324856	NM_006015.4	1517	gCc/gTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105950	27105950	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	108	463	1	ENST00000324856.7:c.5561A>T	p.His1854Leu	p.H1854L	ENST00000324856	NM_006015.4	1854	cAt/cTt																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797105	45797105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	161	649	0	ENST00000372115.3:c.1268G>A	p.Arg423Gln	p.R423Q	ENST00000372115	NM_001048171.1	423	cGg/cAg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46740250	46740250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	89	406	0	ENST00000371975.4:c.1730G>A	p.Gly577Asp	p.G577D	ENST00000371975	NM_003579.3	577	gGc/gAc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462160	120462160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	108	493	0	ENST00000256646.2:c.5556G>T	p.Glu1852Asp	p.E1852D	ENST00000256646	NM_024408.3	1852	gaG/gaT																																																																															
WT1	7490	MSKCC	GRCh37	11	32421514	32421514	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	87	468	0	ENST00000332351.3:c.1078G>T	p.Gly360Cys	p.G360C	ENST00000332351	NM_024426.4	360	Ggt/Tgt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64135721	64135721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	98	589	1	ENST00000334205.4:c.1189G>A	p.Ala397Thr	p.A397T	ENST00000334205	NM_003942.2	397	Gct/Act																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941507	71941507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	80	553	1	ENST00000298229.2:c.1192G>A	p.Ala398Thr	p.A398T	ENST00000298229	NM_001567.3	398	Gcc/Acc																																																																															
ATM	472	MSKCC	GRCh37	11	108151837	108151837	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	110	359	0	ENST00000278616.4:c.3518T>C	p.Leu1173Ser	p.L1173S	ENST00000278616	NM_000051.3	1173	tTg/tCg																																																																															
RAD52	5893	MSKCC	GRCh37	12	1023695	1023695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199638457		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	87	371	1	ENST00000358495.3:c.869C>T	p.Ala290Val	p.A290V	ENST00000358495	NM_134424.2	290	gCg/gTg																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945076	31945076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	105	557	1	ENST00000340398.3:c.25C>T	p.Arg9Cys	p.R9C	ENST00000340398	NM_001013699.2	9	Cgt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436108	49436108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	51	333	0	ENST00000301067.7:c.5873G>A	p.Arg1958His	p.R1958H	ENST00000301067	NM_003482.3	1958	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445799	49445799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	145	833	1	ENST00000301067.7:c.1667C>T	p.Pro556Leu	p.P556L	ENST00000301067	NM_003482.3	556	cCg/cTg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134359	41134359	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	122	479	0	ENST00000379561.5:c.1269del	p.Lys423AsnfsTer9	p.K423Nfs*9	ENST00000379561	NM_002015.3	423	aaA/aa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435150	110435150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	108	524	0	ENST00000375856.3:c.3251C>T	p.Pro1084Leu	p.P1084L	ENST00000375856	NM_003749.2	1084	cCg/cTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436597	110436597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	151	673	0	ENST00000375856.3:c.1804C>T	p.Arg602Trp	p.R602W	ENST00000375856	NM_003749.2	602	Cgg/Tgg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437706	110437706	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	40	600	0	ENST00000375856.3:c.695A>G	p.Asn232Ser	p.N232S	ENST00000375856	NM_003749.2	232	aAc/aGc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222245	2222245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	139	658	0	ENST00000326181.6:c.529G>A	p.Val177Met	p.V177M	ENST00000326181	NM_032271.2	177	Gtg/Atg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639453	3639453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	125	645	1	ENST00000294008.3:c.4186G>A	p.Gly1396Arg	p.G1396R	ENST00000294008	NM_032444.2	1396	Gga/Aga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3832868	3832868	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	111	470	0	ENST00000262367.5:c.1390C>A	p.Gln464Lys	p.Q464K	ENST00000262367	NM_004380.2	464	Caa/Aaa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041882	14041882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	86	323	0	ENST00000311895.7:c.2429C>T	p.Ala810Val	p.A810V	ENST00000311895	NM_005236.2	810	gCg/gTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984481	72984481	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147374923		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	138	602	3	ENST00000268489.5:c.3103G>A	p.Gly1035Ser	p.G1035S	ENST00000268489	NM_006885.3	1035	Ggc/Agc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216160	7216161	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TG	TG	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	76	336	0	ENST00000380728.2:c.901-3_901-2del		p.X301_splice	ENST00000380728		301																																																																																
MAP2K4	6416	MSKCC	GRCh37	17	12011123	12011123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	47	299	0	ENST00000353533.5:c.530G>A	p.Cys177Tyr	p.C177Y	ENST00000353533	NM_003010.3	177	tGt/tAt																																																																															
FLCN	201163	MSKCC	GRCh37	17	17127393	17127393	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	126	570	0	ENST00000285071.4:c.461A>G	p.His154Arg	p.H154R	ENST00000285071	NM_144997.5	154	cAc/cGc																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33430295	33430295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	147	637	0	ENST00000335858.7:c.380G>T	p.Arg127Leu	p.R127L	ENST00000335858	NM_133629.2	127	cGg/cTg																																																																															
RARA	5914	MSKCC	GRCh37	17	38508272	38508272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	134	569	0	ENST00000254066.5:c.580G>A	p.Ala194Thr	p.A194T	ENST00000254066	NM_000964.3	194	Gcg/Acg																																																																															
RARA	5914	MSKCC	GRCh37	17	38511517	38511517	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	104	423	0	ENST00000254066.5:c.1015C>A	p.Arg339Ser	p.R339S	ENST00000254066	NM_000964.3	339	Cgc/Agc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492830	56492830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	110	439	0	ENST00000407977.2:c.109G>A	p.Glu37Lys	p.E37K	ENST00000407977		37	Gag/Aag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2164192	2164192	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	70	320	0	ENST00000398665.3:c.9G>T	p.Glu3Asp	p.E3D	ENST00000398665	NM_032482.2	3	gaG/gaT																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222898	5222898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	113	490	0	ENST00000357368.4:c.2905G>A	p.Val969Met	p.V969M	ENST00000357368	NM_002850.3	969	Gtg/Atg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5243936	5243937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	95	507	0	ENST00000357368.4:c.1545dup	p.Ile516HisfsTer111	p.I516Hfs*111	ENST00000357368	NM_002850.3	515	-/C																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244191	5244191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	133	544	1	ENST00000357368.4:c.1291C>T	p.Arg431Trp	p.R431W	ENST00000357368	NM_002850.3	431	Cgg/Tgg																																																																															
INSR	3643	MSKCC	GRCh37	19	7172389	7172389	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	126	473	0	ENST00000302850.5:c.1180T>C	p.Tyr394His	p.Y394H	ENST00000302850	NM_000208.2	394	Tat/Cat																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098410	11098410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	111	440	2	ENST00000344626.4:c.928C>T	p.Arg310Cys	p.R310C	ENST00000344626	NM_003072.3	310	Cgc/Tgc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101866	11101866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	132	630	1	ENST00000344626.4:c.1286C>T	p.Ala429Val	p.A429V	ENST00000344626	NM_003072.3	429	gCg/gTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11107218	11107218	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	152	601	0	ENST00000344626.4:c.1810G>A	p.Glu604Lys	p.E604K	ENST00000344626	NM_003072.3	604	Gag/Aag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288807	15288807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	49	181	0	ENST00000263388.2:c.3932C>T	p.Pro1311Leu	p.P1311L	ENST00000263388	NM_000435.2	1311	cCg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210770	36210770	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	233	678	0	ENST00000222270.7:c.521C>A	p.Pro174Gln	p.P174Q	ENST00000222270	NM_014727.1	174	cCa/cAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227663	36227663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	69	619	0	ENST00000222270.7:c.7232G>A	p.Gly2411Asp	p.G2411D	ENST00000222270	NM_014727.1	2411	gGc/gAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229342	36229342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	179	568	0	ENST00000222270.7:c.8032C>T	p.Arg2678Cys	p.R2678C	ENST00000222270	NM_014727.1	2678	Cgc/Tgc																																																																															
ERF	2077	MSKCC	GRCh37	19	42752694	42752694	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	189	620	0	ENST00000222329.4:c.1570C>G	p.Pro524Ala	p.P524A	ENST00000222329	NM_006494.2	524	Ccc/Gcc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464521	25464521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	147	607	0	ENST00000264709.3:c.1992G>T	p.Glu664Asp	p.E664D	ENST00000264709	NM_175629.2	664	gaG/gaT																																																																															
MSH2	4436	MSKCC	GRCh37	2	47657019	47657019	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	80	365	0	ENST00000233146.2:c.1215C>G	p.Tyr405Ter	p.Y405*	ENST00000233146	NM_000251.2	405	taC/taG																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99170738	99170738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	83	328	0	ENST00000074304.5:c.1367G>A	p.Arg456Gln	p.R456Q	ENST00000074304	NM_001134224.1	456	cGg/cAg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021673	31021673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	148	470	2	ENST00000375687.4:c.1672G>A	p.Glu558Lys	p.E558K	ENST00000375687	NM_015338.5	558	Gaa/Aaa																																																																															
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62317172	62317172	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs770158407		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	139	687	1	ENST00000482936.1:c.1295G>A	p.Arg432Gln	p.R432Q	ENST00000482936		432	cGg/cAg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656873	45656873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	126	546	1	ENST00000407780.3:c.283G>A	p.Asp95Asn	p.D95N	ENST00000407780	NM_001283052.1	95	Gac/Aac																																																																															
EP300	2033	MSKCC	GRCh37	22	41553308	41553308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	67	512	0	ENST00000263253.7:c.3397C>T	p.Arg1133Trp	p.R1133W	ENST00000263253	NM_001429.3	1133	Cgg/Tgg																																																																															
EP300	2033	MSKCC	GRCh37	22	41565553	41565553	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	98	386	0	ENST00000263253.7:c.4219A>G	p.Lys1407Glu	p.K1407E	ENST00000263253	NM_001429.3	1407	Aaa/Gaa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52438551	52438551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	136	488	0	ENST00000460680.1:c.1168C>A	p.Pro390Thr	p.P390T	ENST00000460680	NM_004656.3	390	Cca/Aca																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427784	72427784	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	41	302	0	ENST00000477973.2:c.704del	p.Arg236GlyfsTer2	p.R236Gfs*2	ENST00000477973	NM_012234.5	236	Cgg/gg																																																																															
ATR	545	MSKCC	GRCh37	3	142223982	142223982	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	39	432	0	ENST00000350721.4:c.5195A>G	p.Gln1732Arg	p.Q1732R	ENST00000350721	NM_001184.3	1732	cAg/cGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178948102	178948102	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	58	225	0	ENST00000263967.3:c.2874G>T	p.Gln958His	p.Q958H	ENST00000263967	NM_006218.2	958	caG/caT																																																																															
KIT	3815	MSKCC	GRCh37	4	55604674	55604674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	112	420	0	ENST00000288135.5:c.2882G>A	p.Gly961Asp	p.G961D	ENST00000288135	NM_000222.2	961	gGc/gAc																																																																															
KDR	3791	MSKCC	GRCh37	4	55955970	55955970	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	96	368	0	ENST00000263923.4:c.3193-1G>A		p.X1065_splice	ENST00000263923	NM_002253.2	1065																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153249412	153249412	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	91	494	0	ENST00000281708.4:c.1366A>G	p.Thr456Ala	p.T456A	ENST00000281708	NM_033632.3	456	Acc/Gcc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524677	187524677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	166	641	1	ENST00000441802.2:c.11003G>A	p.Arg3668Gln	p.R3668Q	ENST00000441802	NM_005245.3	3668	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112170712	112170712	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	104	467	1	ENST00000257430.4:c.1808A>G	p.Lys603Arg	p.K603R	ENST00000257430	NM_000038.5	603	aAa/aGa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721025	176721025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	92	508	0	ENST00000439151.2:c.6656G>A	p.Arg2219His	p.R2219H	ENST00000439151	NM_022455.4	2219	cGt/cAt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120433	94120433	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	70	360	0	ENST00000369303.4:c.618G>A	p.Trp206Ter	p.W206*	ENST00000369303	NM_004440.3	206	tgG/tgA																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129475	152129475	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	24	280	0	ENST00000206249.3:c.428A>G	p.Glu143Gly	p.E143G	ENST00000206249	NM_000125.3	143	gAg/gGg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962304	2962304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	147	616	0	ENST00000396946.4:c.2233G>T	p.Gly745Cys	p.G745C	ENST00000396946	NM_032415.4	745	Ggc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221845	55221845	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	135	626	0	ENST00000275493.2:c.889C>T	p.Arg297Cys	p.R297C	ENST00000275493	NM_005228.3	297	Cgt/Tgt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878272	151878272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	119	495	1	ENST00000262189.6:c.6673C>T	p.Pro2225Ser	p.P2225S	ENST00000262189	NM_170606.2	2225	Cca/Tca																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371924	55371924	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	31	336	0	ENST00000297316.4:c.614A>C	p.Asp205Ala	p.D205A	ENST00000297316	NM_022454.3	205	gAc/gCc																																																																															
LYN	4067	MSKCC	GRCh37	8	56912001	56912001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	130	464	2	ENST00000519728.1:c.1229C>T	p.Thr410Met	p.T410M	ENST00000519728	NM_002350.3	410	aCg/aTg																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80537076	80537076	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	107	372	0	ENST00000286548.4:c.321+1G>A		p.X107_splice	ENST00000286548	NM_002072.3	107																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53245029	53245029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	140	294	0	ENST00000375401.3:c.911C>A	p.Pro304His	p.P304H	ENST00000375401	NM_004187.3	304	cCc/cAc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123191765	123191765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	73	193	0	ENST00000218089.9:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000218089	NM_001042749.1	452	Gga/Aga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65303634	65303634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	78	710	0	ENST00000342505.4:c.3121C>T	p.Arg1041Trp	p.R1041W	ENST00000342505	NM_002227.2	1041	Cgg/Tgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29553477	29553477	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	56	673	0	ENST00000358273.4:c.2026A>C	p.Thr676Pro	p.T676P	ENST00000358273	NM_001042492.2	676	Acc/Ccc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279574	18279574	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	184	815	0	ENST00000222254.8:c.1847A>G	p.His616Arg	p.H616R	ENST00000222254	NM_005027.3	616	cAc/cGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115885	8115886	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	170	623	0	ENST00000346208.3:c.1232dup	p.His411GlnfsTer96	p.H411Qfs*96	ENST00000346208		411	cac/cAac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060868	38060869	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGAG			P-0039367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	204	719	0	ENST00000250448.2:c.1116_1120dup	p.His374ProfsTer17	p.H374Pfs*17	ENST00000250448	NM_004496.3	374	cac/cCTCTCac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	23	501	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988447	36988456	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAGCGGAG	GCCAGCGGAG	-			P-0039368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	37	701	0	ENST00000354822.5:c.197_206del	p.Ala66GlyfsTer32	p.A66Gfs*32	ENST00000354822	NM_001079668.2	66	gCTCCGCTGGCg/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0039374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	113	509	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0039374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	117	338	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0039374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	59	568	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577520	7577520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	251	679	0	ENST00000269305.4:c.761T>A	p.Ile254Asn	p.I254N	ENST00000269305	NM_001126112.2	254	aTc/aAc																																																																															
TET2	54790	MSKCC	GRCh37	4	106180838	106180838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	65	426	0	ENST00000380013.4:c.3866G>A	p.Cys1289Tyr	p.C1289Y	ENST00000380013	NM_001127208.2	1289	tGt/tAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212439	5212439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150241840		P-0039374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	264	853	1	ENST00000357368.4:c.4678G>A	p.Val1560Met	p.V1560M	ENST00000357368	NM_002850.3	1560	Gtg/Atg																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56787260	56787260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	89	684	0	ENST00000337432.4:c.746G>A	p.Arg249His	p.R249H	ENST00000337432	NM_058216.2	249	cGt/cAt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939133	36939133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	51	903	0	ENST00000361632.4:c.576C>A	p.His192Gln	p.H192Q	ENST00000361632		192	caC/caA																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128016984	128016984	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	119	760	0	ENST00000285398.2:c.2105C>G	p.Ala702Gly	p.A702G	ENST00000285398	NM_000122.1	702	gCg/gGg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120573	94120573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	70	454	0	ENST00000369303.4:c.478C>T	p.Leu160Phe	p.L160F	ENST00000369303	NM_004440.3	160	Ctt/Ttt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412308	139412308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	130	837	1	ENST00000277541.6:c.1337G>A	p.Gly446Asp	p.G446D	ENST00000277541	NM_017617.3	446	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577151	7577156	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TACCAC	TACCAC	-			P-0039416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	332	670	1	ENST00000269305.4:c.783-1_787del		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	protein_altering_variant	In_Frame_Ins	INS	-	-	GTT			P-0039416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	537	612	0	ENST00000275493.2:c.2308_2309insGTT	p.Asp770delinsGlyTyr	p.D770delinsGY	ENST00000275493	NM_005228.3	770	gac/gGTTac																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246490567	246490567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	127	554	1	ENST00000388985.4:c.467G>A	p.Arg156Lys	p.R156K	ENST00000388985		156	aGa/aAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	90	400	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0039418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	31	264	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0039418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	91	675	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806180	1806181	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775260779		P-0039418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	85	734	1	ENST00000260795.2:c.1206dup	p.Lys403GlnfsTer93	p.K403Qfs*93	ENST00000260795		400	agc/agCc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517532	176517532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200146267		P-0039418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	130	865	4	ENST00000292408.4:c.233G>A	p.Arg78His	p.R78H	ENST00000292408	NM_213647.1	78	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	134	386	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49415622	49415622	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	98	343	0	ENST00000301067.7:c.16555G>T	p.Asp5519Tyr	p.D5519Y	ENST00000301067	NM_003482.3	5519	Gat/Tat																																																																															
MAX	4149	MSKCC	GRCh37	14	65560489	65560490	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0039420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	126	467	0	ENST00000358664.4:c.107_108delinsCT	p.Arg36Thr	p.R36T	ENST00000358664	NM_002382.4	36	aGG/aCT																																																																															
MGA	23269	MSKCC	GRCh37	15	42041420	42041420	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	170	491	0	ENST00000219905.7:c.5615G>C	p.Gly1872Ala	p.G1872A	ENST00000219905	NM_001164273.1	1872	gGg/gCg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131267	17131267	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	267	818	0	ENST00000285071.4:c.185G>T	p.Ser62Ile	p.S62I	ENST00000285071	NM_144997.5	62	aGc/aTc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989580	212989580	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	112	328	0	ENST00000342788.4:c.131A>T	p.Gln44Leu	p.Q44L	ENST00000342788	NM_005235.2	44	cAg/cTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162111	47162111	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	116	344	0	ENST00000409792.3:c.4015G>T	p.Glu1339Ter	p.E1339*	ENST00000409792	NM_014159.6	1339	Gag/Tag																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204836	128204836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	249	878	3	ENST00000341105.2:c.605C>T	p.Ala202Val	p.A202V	ENST00000341105	NM_032638.4	202	gCa/gTa																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139566480	139566480	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	232	829	0	ENST00000308874.7:c.739C>G	p.Leu247Val	p.L247V	ENST00000308874		247	Ctc/Gtc																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152853826	152853826	+	synonymous_variant	Silent	SNP	G	G	T			P-0039420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	51	55	0	ENST00000406277.2:c.738C>A	p.Pro246=	p.P246=	ENST00000406277	NM_152274.4	246	ccC/ccA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	35	524	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	46	330	0	ENST00000397062.3:c.101G>A	p.Arg34Gln	p.R34Q	ENST00000397062	NM_006164.4	34	cGa/cAa																																																																															
ABL1	25	MSKCC	GRCh37	9	133760106	133760106	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2229071		P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	138	727	1	ENST00000318560.5:c.2429C>T	p.Pro810Leu	p.P810L	ENST00000318560	NM_005157.4	810	cCg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443703	49443703	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	95	686	0	ENST00000301067.7:c.3668C>G	p.Ser1223Ter	p.S1223*	ENST00000301067	NM_003482.3	1223	tCa/tGa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552921	106552921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	107	810	0	ENST00000369096.4:c.886C>T	p.Arg296Trp	p.R296W	ENST00000369096	NM_001198.3	296	Cgg/Tgg																																																																															
ATRX	546	MSKCC	GRCh37	X	76890189	76890189	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	23	402	0	ENST00000373344.5:c.4705C>T	p.Gln1569Ter	p.Q1569*	ENST00000373344	NM_000489.3	1569	Cag/Tag																																																																															
CDC73	79577	MSKCC	GRCh37	1	193218934	193218934	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	25	294	0	ENST00000367435.3:c.1492G>C	p.Glu498Gln	p.E498Q	ENST00000367435	NM_024529.4	498	Gaa/Caa																																																																															
ATM	472	MSKCC	GRCh37	11	108139193	108139193	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	53	549	0	ENST00000278616.4:c.2695G>C	p.Asp899His	p.D899H	ENST00000278616	NM_000051.3	899	Gac/Cac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434079	49434079	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	83	699	0	ENST00000301067.7:c.7474G>C	p.Gly2492Arg	p.G2492R	ENST00000301067	NM_003482.3	2492	Ggg/Cgg																																																																															
RB1	5925	MSKCC	GRCh37	13	48916767	48916780	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAATCTGTATCT	GGGAATCTGTATCT	-			P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	16	381	0	ENST00000267163.4:c.297_310del	p.Trp99CysfsTer6	p.W99Cfs*6	ENST00000267163	NM_000321.2	99	tgGGGAATCTGTATCTtt/tgtt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198285176	198285176	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	50	388	0	ENST00000335508.6:c.391G>C	p.Glu131Gln	p.E131Q	ENST00000335508	NM_012433.2	131	Gag/Cag																																																																															
EP300	2033	MSKCC	GRCh37	22	41554426	41554426	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	46	424	0	ENST00000263253.7:c.3512C>G	p.Ser1171Cys	p.S1171C	ENST00000263253	NM_001429.3	1171	tCt/tGt																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197395	26197395	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	39	333	0	ENST00000356476.2:c.84G>C	p.Lys28Asn	p.K28N	ENST00000356476		28	aaG/aaC																																																																															
BRCA1	672	MSKCC	GRCh37	17	41276095	41276098	+	missense_variant	Missense_Mutation	ONP	GAAG	GAAG	AAAA			P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	39	451	2	ENST00000357654.3:c.16_19delinsTTTT	p.Leu6_Arg7delinsPheCys	p.L6_R7delinsFC	ENST00000357654	NM_007294.3	6	CTTCgc/TTTTgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	28	423	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	12	677	0	ENST00000269305.4:c.949delC	p.Gln317SerfsTer28	p.Q317Sfs*28	ENST00000269305	NM_001126112.2	317	Cag/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	30	445	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0039442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	38	964	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0039442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	31	342	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851646	134851646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	28	594	1	ENST00000398015.3:c.1052G>A	p.Arg351Gln	p.R351Q	ENST00000398015	NM_004441.4	351	cGg/cAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624290	89624290	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	36	554	2	ENST00000371953.3:c.64G>T	p.Asp22Tyr	p.D22Y	ENST00000371953	NM_000314.4	22	Gac/Tac																																																																															
KIT	3815	MSKCC	GRCh37	4	55604658	55604658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	45	550	2	ENST00000288135.5:c.2866C>T	p.Arg956Trp	p.R956W	ENST00000288135	NM_000222.2	956	Cgg/Tgg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273297	18273297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	30	524	1	ENST00000222254.8:c.1090G>A	p.Glu364Lys	p.E364K	ENST00000222254	NM_005027.3	364	Gag/Aag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530159	212530159	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	20	339	0	ENST00000342788.4:c.1760C>G	p.Pro587Arg	p.P587R	ENST00000342788	NM_005235.2	587	cCa/cGa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891313	151891313	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0039442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	51	416	0	ENST00000262189.6:c.4540+1G>C		p.X1514_splice	ENST00000262189	NM_170606.2	1514																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	77	485	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	67	236	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427721	72427721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	114	433	1	ENST00000477973.2:c.767G>A	p.Val257Ile	p.V257I	ENST00000477973	NM_012234.5	257	Gtc/Atc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	354	908	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	136	620	3	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	62	317	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	60	332	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	66	268	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129374	64129374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142374327		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	197	887	2	ENST00000334205.4:c.806C>T	p.Ala269Val	p.A269V	ENST00000334205	NM_003942.2	269	gCg/gTg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808647	1808647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	202	1058	0	ENST00000260795.2:c.2260G>A	p.Val754Met	p.V754M	ENST00000260795		754	Gtg/Atg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	92	379	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	208	1045	8	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	103	497	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	129	499	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	127	632	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	115	479	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195289	102195289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs186307109		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	78	364	0	ENST00000263464.3:c.49G>A	p.Ala17Thr	p.A17T	ENST00000263464	NM_001165.4	17	Gcc/Acc																																																																															
CASP8	841	MSKCC	GRCh37	2	202150022	202150022	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	77	626	0	ENST00000358485.4:c.1463T>C	p.Leu488Pro	p.L488P	ENST00000358485	NM_001080125.1	488	cTg/cCg																																																																															
TET1	80312	MSKCC	GRCh37	10	70404693	70404693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	143	477	0	ENST00000373644.4:c.2207C>T	p.Ser736Leu	p.S736L	ENST00000373644	NM_030625.2	736	tCg/tTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966159	25966159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	160	746	0	ENST00000435504.4:c.3047C>T	p.Thr1016Met	p.T1016M	ENST00000435504		1016	aCg/aTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42041117	42041117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	155	616	0	ENST00000219905.7:c.5495G>A	p.Arg1832Gln	p.R1832Q	ENST00000219905	NM_001164273.1	1832	cGg/cAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711908	89711910	+	inframe_deletion	In_Frame_Del	DEL	TAT	TAT	-	rs587780711		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	55	423	0	ENST00000371953.3:c.532_534del	p.Tyr178del	p.Y178del	ENST00000371953	NM_000314.4	176	TAT/-																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981721	101981721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	70	329	1	ENST00000282441.5:c.147del	p.Ala50ProfsTer24	p.A50Pfs*24	ENST00000282441	NM_001130145.2	48	Ccc/cc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965736	93965736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	53	257	0	ENST00000369303.4:c.2192C>T	p.Thr731Ile	p.T731I	ENST00000369303	NM_004440.3	731	aCa/aTa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53246447	53246447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	131	695	0	ENST00000375401.3:c.535C>T	p.Arg179Cys	p.R179C	ENST00000375401	NM_004187.3	179	Cgt/Tgt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836386	89836386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	162	743	1	ENST00000389301.3:c.2363C>T	p.Ala788Val	p.A788V	ENST00000389301	NM_000135.2	788	gCc/gTc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250399	10250399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	81	627	0	ENST00000340748.4:c.3853C>T	p.Arg1285Cys	p.R1285C	ENST00000340748		1285	Cgc/Tgc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40376852	40376852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	161	722	0	ENST00000293328.3:c.320G>A	p.Arg107His	p.R107H	ENST00000293328	NM_012448.3	107	cGc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099427	157099432	+	inframe_deletion	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	rs1234257273		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	37	296	2	ENST00000346085.5:c.381_386del	p.Gln130_Gln131del	p.Q130_Q131del	ENST00000346085	NM_020732.3	122	CAGCAG/-																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816544	32816544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	213	966	2	ENST00000354258.4:c.1631G>A	p.Arg544His	p.R544H	ENST00000354258	NM_000593.5	544	cGc/cAc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468426	120468426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	91	661	0	ENST00000256646.2:c.4013C>T	p.Ser1338Phe	p.S1338F	ENST00000256646	NM_024408.3	1338	tCc/tTc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350882	89350882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	224	761	0	ENST00000301030.4:c.2068G>A	p.Asp690Asn	p.D690N	ENST00000301030	NM_001256183.1	690	Gat/Aat																																																																															
AGO2	27161	MSKCC	GRCh37	8	141595382	141595382	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	223	851	1	ENST00000220592.5:c.51del	p.Ile18SerfsTer121	p.I18Sfs*121	ENST00000220592	NM_012154.3	17	ccC/cc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458824	120458824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	191	787	0	ENST00000256646.2:c.6521G>A	p.Gly2174Glu	p.G2174E	ENST00000256646	NM_024408.3	2174	gGg/gAg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135798769	135798769	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	63	354	0	ENST00000298552.3:c.474del	p.Phe158LeufsTer9	p.F158Lfs*9	ENST00000298552	NM_001162426.1	158	ttT/tt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120094	70120094	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	16	73	0	ENST00000245479.2:c.1100delC	p.Pro367HisfsTer16	p.P367Hfs*16	ENST00000245479	NM_000346.3	366	Ccc/cc																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2647142	2647142	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	108	492	0	ENST00000342085.4:c.1420C>T	p.Arg474Ter	p.R474*	ENST00000342085	NM_002613.4	474	Cga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255775	16255775	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199847404		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	103	492	0	ENST00000375759.3:c.3040G>A	p.Val1014Met	p.V1014M	ENST00000375759	NM_015001.2	1014	Gtg/Atg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65301191	65301192	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TA	TA	-			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	45	211	0	ENST00000342505.4:c.3259-3_3259-2del		p.X1087_splice	ENST00000342505	NM_002227.2	1087																																																																																
PARP1	142	MSKCC	GRCh37	1	226552736	226552736	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	179	648	1	ENST00000366794.5:c.2625G>T	p.Gln875His	p.Q875H	ENST00000366794	NM_001618.3	875	caG/caT																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724708	112724708	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	70	442	0	ENST00000369452.4:c.592T>C	p.Tyr198His	p.Y198H	ENST00000369452	NM_007373.3	198	Tac/Cac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445229	49445229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	218	1058	0	ENST00000301067.7:c.2237G>A	p.Arg746Gln	p.R746Q	ENST00000301067	NM_003482.3	746	cGg/cAg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046610	30046610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	155	645	0	ENST00000331968.5:c.2573G>A	p.Arg858His	p.R858H	ENST00000331968	NM_002742.2	858	cGc/cAc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81528547	81528547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	44	110	0	ENST00000298171.2:c.226C>T	p.Pro76Ser	p.P76S	ENST00000298171	NM_000369.2	76	Ccc/Tcc																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2097758	2097758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	170	821	0	ENST00000219066.1:c.91G>A	p.Gly31Arg	p.G31R	ENST00000219066	NM_002528.5	31	Ggg/Agg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821200	72821200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	177	845	0	ENST00000268489.5:c.10975G>A	p.Asp3659Asn	p.D3659N	ENST00000268489	NM_006885.3	3659	Gac/Aac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984678	72984678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	218	824	4	ENST00000268489.5:c.2906G>A	p.Arg969His	p.R969H	ENST00000268489	NM_006885.3	969	cGc/cAc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89811380	89811380	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1219	109	1025	2	ENST00000389301.3:c.3613C>T	p.Gln1205Ter	p.Q1205*	ENST00000389301	NM_000135.2	1205	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120439	70120439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1212	239	1147	0	ENST00000245479.2:c.1441G>A	p.Ala481Thr	p.A481T	ENST00000245479	NM_000346.3	481	Gcc/Acc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210687	2210687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	222	1034	3	ENST00000398665.3:c.1184G>A	p.Arg395His	p.R395H	ENST00000398665	NM_032482.2	395	cGc/cAc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273315	18273315	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	89	443	1	ENST00000222254.8:c.1108A>G	p.Arg370Gly	p.R370G	ENST00000222254	NM_005027.3	370	Agg/Ggg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229355	36229355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	148	716	1	ENST00000222270.7:c.8045G>A	p.Arg2682His	p.R2682H	ENST00000222270	NM_014727.1	2682	cGt/cAt																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45856030	45856030	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139002770		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	221	904	2	ENST00000391945.4:c.1876G>A	p.Val626Ile	p.V626I	ENST00000391945	NM_000400.3	626	Gtc/Atc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082483	16082483	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	174	843	3	ENST00000281043.3:c.302del	p.Gly101AspfsTer30	p.G101Dfs*30	ENST00000281043	NM_005378.4	99	ctG/ct																																																																															
EP300	2033	MSKCC	GRCh37	22	41573881	41573881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	181	963	2	ENST00000263253.7:c.6166C>T	p.Arg2056Trp	p.R2056W	ENST00000263253	NM_001429.3	2056	Cgg/Tgg																																																																															
MSH3	4437	MSKCC	GRCh37	5	80149965	80149966	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	50	342	0	ENST00000265081.6:c.2838_2839dup	p.Lys947IlefsTer11	p.K947Ifs*11	ENST00000265081	NM_002439.4	944	aat/aATat																																																																															
APC	324	MSKCC	GRCh37	5	112102982	112102982	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201764637		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	109	534	0	ENST00000257430.4:c.317G>A	p.Arg106His	p.R106H	ENST00000257430	NM_000038.5	106	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112176661	112176661	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	59	213	0	ENST00000257430.4:c.5375del	p.Asn1792MetfsTer8	p.N1792Mfs*8	ENST00000257430	NM_000038.5	1790	agA/ag																																																																															
RAD50	10111	MSKCC	GRCh37	5	131926920	131926920	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776949511		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	35	165	0	ENST00000265335.6:c.1457G>A	p.Arg486His	p.R486H	ENST00000265335		486	cGt/cAt																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858420	27858420	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	121	578	0	ENST00000359303.2:c.151G>T	p.Glu51Ter	p.E51*	ENST00000359303	NM_003535.2	51	Gag/Tag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680619	30680619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	144	606	2	ENST00000376406.3:c.1100C>T	p.Ala367Val	p.A367V	ENST00000376406	NM_014641.2	367	gCc/gTc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800444	32800444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	264	1169	2	ENST00000374899.4:c.1103G>A	p.Arg368Gln	p.R368Q	ENST00000374899	NM_018833.2	368	cGg/cAg																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43748539	43748539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	139	538	0	ENST00000523873.1:c.493G>A	p.Val165Met	p.V165M	ENST00000523873		165	Gtg/Atg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100411	157100411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	23	84	0	ENST00000346085.5:c.1348C>T	p.Pro450Ser	p.P450S	ENST00000346085	NM_020732.3	450	Ccg/Tcg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508868	106508868	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	39	630	1	ENST00000359195.3:c.866del	p.Asn289ThrfsTer5	p.N289Tfs*5	ENST00000359195	NM_002649.2	288	Aaa/aa																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127951922	127951922	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	206	796	1	ENST00000373547.4:c.75+1G>A		p.X25_splice	ENST00000373547	NM_002721.4	25																																																																																
RXRA	6256	MSKCC	GRCh37	9	137300801	137300801	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	49	796	0	ENST00000481739.1:c.446T>C	p.Val149Ala	p.V149A	ENST00000481739	NM_002957.4	149	gTg/gCg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006837	47006837	+	5_prime_UTR_variant	5'UTR	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	224	919	0	ENST00000329236.7:c.-44G>A		p.*15*	ENST00000329236	NM_001204466.1																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0039445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	100	765	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	58	450	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938468	44938468	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	40	476	0	ENST00000377967.4:c.3016C>T	p.Gln1006Ter	p.Q1006*	ENST00000377967	NM_021140.2	1006	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	382	750	0	ENST00000269305.4:c.808T>C	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	Ttt/Ctt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579718	7579718	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	260	657	0	ENST00000269305.4:c.78delT	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	26	ctT/ct																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18524238	18524238	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	347	528	0	ENST00000266497.5:c.1751del	p.Pro584GlnfsTer14	p.P584Qfs*14	ENST00000266497		584	Cca/ca																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061206	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCGCAAGTAGCAGCCGTTCTCGAACATGTT	GCGCAAGTAGCAGCCGTTCTCGAACATGTT	-			P-0039446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	247	543	0	ENST00000250448.2:c.754_783del	p.Asn252_Arg261del	p.N252_R261del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTGCTACTTGCGC/-																																																																															
MGA	23269	MSKCC	GRCh37	15	42059169	42059170	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	223	462	0	ENST00000219905.7:c.8895dup	p.Thr2966HisfsTer33	p.T2966Hfs*33	ENST00000219905	NM_001164273.1	2963	-/C																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101867538	101867546	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-			P-0039508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	17	28	1	ENST00000374994.4:c.70_78delGCGGCGGCG	p.Ala24_Ala26del	p.A24_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCGGCg/ctg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89462360	89462360	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000604-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1181	98	343	0	ENST00000336596.2:c.1832A>C	p.Glu611Ala	p.E611A	ENST00000336596	NM_005233.5	611	gAg/gCg																																																																															
ABL1	25	MSKCC	GRCh37	9	133747572	133747572	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000604-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			643	55	273	0	ENST00000318560.5:c.879C>G	p.Ile293Met	p.I293M	ENST00000318560	NM_005157.4	293	atC/atG																																																																															
PAK1	5058	MSKCC	GRCh37	11	77090381	77090381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000604-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1332	148	493	1	ENST00000356341.3:c.344C>T	p.Ser115Leu	p.S115L	ENST00000356341	NM_002576.4	115	tCg/tTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877454	40877454	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000604-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			569	52	204	0	ENST00000373198.4:c.2242A>G	p.Thr748Ala	p.T748A	ENST00000373198	NM_133170.3	748	Acc/Gcc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259439	55259439	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs397517126		P-0031258-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			717	160	481	0	ENST00000275493.2:c.2497T>G	p.Leu833Val	p.L833V	ENST00000275493	NM_005228.3	833	Ttg/Gtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0031258-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			932	195	639	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913396		P-0031258-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			340	80	379	0	ENST00000349496.5:c.95A>G	p.Asp32Gly	p.D32G	ENST00000349496	NM_001904.3	32	gAc/gGc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905560	50905568	+	inframe_deletion	In_Frame_Del	DEL	GGCATCCGT	GGCATCCGT	-			P-0031258-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			978	227	968	0	ENST00000440232.2:c.689_697del	p.Gly230_Arg232del	p.G230_R232del	ENST00000440232	NM_002691.3	230	GGCATCCGT/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0038851-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	373	787	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654646	67654646	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038851-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	203	506	1	ENST00000264010.4:c.1133C>A	p.Pro378Gln	p.P378Q	ENST00000264010	NM_006565.3	378	cCg/cAg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922202	39922202	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038851-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			551	85	514	0	ENST00000378444.4:c.3970A>G	p.Ile1324Val	p.I1324V	ENST00000378444	NM_001123385.1	1324	Att/Gtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	212	551	0	ENST00000269305.4:c.734G>C	p.Gly245Ala	p.G245A	ENST00000269305	NM_001126112.2	245	gGc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0039164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	267	728	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	287	668	0	ENST00000326873.7:c.842dup	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggCc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123353315	123353315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	76	697	1	ENST00000358487.5:c.17G>A	p.Arg6His	p.R6H	ENST00000358487	NM_000141.4	6	cGt/cAt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729968	41729968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	180	659	0	ENST00000242208.4:c.561C>A	p.Asp187Glu	p.D187E	ENST00000242208	NM_002192.2	187	gaC/gaA																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400033	139400033	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200232299		P-0039164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	88	797	1	ENST00000277541.6:c.4315G>A	p.Asp1439Asn	p.D1439N	ENST00000277541	NM_017617.3	1439	Gac/Aac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600005	10600005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	357	783	0	ENST00000171111.5:c.1571G>T	p.Gly524Val	p.G524V	ENST00000171111	NM_203500.1	524	gGc/gTc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25990467	25990467	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	83	396	0	ENST00000435504.4:c.760G>C	p.Glu254Gln	p.E254Q	ENST00000435504		254	Gag/Cag																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246498674	246498674	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	147	419	0	ENST00000388985.4:c.331A>C	p.Lys111Gln	p.K111Q	ENST00000388985		111	Aaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578525	7578526	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0039164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1203	205	870	3	ENST00000269305.4:c.404_405delinsTT	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGC/tTT																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945459	17945459	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	335	737	0	ENST00000458235.1:c.2271A>T	p.Gln757His	p.Q757H	ENST00000458235	NM_000215.3	757	caA/caT																																																																															
ALK	238	MSKCC	GRCh37	2	29416182	29416196	+	inframe_deletion	In_Frame_Del	DEL	AGCCCTGTTGCTGGT	AGCCCTGTTGCTGGT	-			P-0039164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	47	565	0	ENST00000389048.3:c.4757_4771del	p.Tyr1586_Gly1590del	p.Y1586_G1590del	ENST00000389048	NM_004304.4	1586	tACCAGCAACAGGGCTtg/ttg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190742109	190742109	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	93	382	0	ENST00000441310.2:c.2746G>C	p.Val916Leu	p.V916L	ENST00000441310	NM_000534.4	916	Gtt/Ctt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164751	36164751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	464	772	0	ENST00000300305.3:c.1124C>A	p.Thr375Lys	p.T375K	ENST00000300305		375	aCg/aAg																																																																															
NF2	4771	MSKCC	GRCh37	22	30069411	30069411	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	236	627	1	ENST00000338641.4:c.1276A>T	p.Met426Leu	p.M426L	ENST00000338641	NM_000268.3	426	Atg/Ttg																																																																															
RYBP	23429	MSKCC	GRCh37	3	72428191	72428191	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0039164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	76	414	0	ENST00000477973.2:c.699G>T	p.Arg234Met	p.R234M	ENST00000477973	NM_012234.5	234	aGg/aTg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876094	35876094	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	128	313	0	ENST00000303115.3:c.886G>T	p.Val296Leu	p.V296L	ENST00000303115	NM_002185.3	296	Gtg/Ttg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242458	55242458	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	44	415	0	ENST00000275493.2:c.2228C>G	p.Ala743Gly	p.A743G	ENST00000275493	NM_005228.3	743	gCt/gGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	281	383	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	297	707	0	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288799	15288799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	138	201	0	ENST00000263388.2:c.3940G>A	p.Ala1314Thr	p.A1314T	ENST00000263388	NM_000435.2	1314	Gcc/Acc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713829	30713829	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	271	618	2	ENST00000359013.4:c.1229T>A	p.Ile410Asn	p.I410N	ENST00000359013	NM_001024847.2	410	aTc/aAc																																																																															
NBN	4683	MSKCC	GRCh37	8	90992975	90992975	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	137	362	0	ENST00000265433.3:c.467A>T	p.Lys156Ile	p.K156I	ENST00000265433	NM_002485.4	156	aAa/aTa																																																																															
ATRX	546	MSKCC	GRCh37	X	76855977	76855977	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	171	495	0	ENST00000373344.5:c.5623G>T	p.Asp1875Tyr	p.D1875Y	ENST00000373344	NM_000489.3	1875	Gat/Tat																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	166	508	2	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0039230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	204	407	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643297	38643297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	28	353	0	ENST00000299084.4:c.767G>A	p.Arg256His	p.R256H	ENST00000299084	NM_152594.2	256	cGt/cAt																																																																															
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	563	330	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057000	180057000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	97	805	0	ENST00000261937.6:c.619G>A	p.Glu207Lys	p.E207K	ENST00000261937	NM_182925.4	207	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	26	354	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0039319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	279	560	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	44	314	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
RET	5979	MSKCC	GRCh37	10	43615035	43615035	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142318626		P-0039319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	97	598	0	ENST00000355710.3:c.2449C>T	p.Arg817Cys	p.R817C	ENST00000355710	NM_020975.4	817	Cgc/Tgc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984024	2984024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	172	532	0	ENST00000396946.4:c.506C>T	p.Thr169Met	p.T169M	ENST00000396946	NM_032415.4	169	aCg/aTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419957	41419957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	115	524	0	ENST00000373198.4:c.364G>A	p.Val122Ile	p.V122I	ENST00000373198	NM_133170.3	122	Gtc/Atc																																																																															
KIT	3815	MSKCC	GRCh37	4	55564615	55564615	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149092990		P-0039319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	106	532	0	ENST00000288135.5:c.503C>T	p.Ala168Val	p.A168V	ENST00000288135	NM_000222.2	168	gCg/gTg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085824	16085824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	195	499	0	ENST00000281043.3:c.1000G>A	p.Ala334Thr	p.A334T	ENST00000281043	NM_005378.4	334	Gcc/Acc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3799677	3799677	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	25	263	0	ENST00000262367.5:c.3787T>G	p.Ser1263Ala	p.S1263A	ENST00000262367	NM_004380.2	1263	Tca/Gca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828584	72828584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	62	572	1	ENST00000268489.5:c.7997C>T	p.Pro2666Leu	p.P2666L	ENST00000268489	NM_006885.3	2666	cCg/cTg																																																																															
ALK	238	MSKCC	GRCh37	2	29543634	29543634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	98	533	0	ENST00000389048.3:c.1529G>A	p.Arg510Gln	p.R510Q	ENST00000389048	NM_004304.4	510	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112174555	112174556	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0039319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	61	420	0	ENST00000257430.4:c.3265_3266insAT	p.Phe1089TyrfsTer38	p.F1089Yfs*38	ENST00000257430	NM_000038.5	1088	-/TA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0039325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	66	449	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	93	554	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874286	155874286	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	90	444	0	ENST00000368323.3:c.245T>G	p.Phe82Cys	p.F82C	ENST00000368323	NM_006912.5	82	tTt/tGt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797330	135797337	+	frameshift_variant	Frame_Shift_Del	DEL	AGATGGAC	AGATGGAC	-			P-0039325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	18	348	0	ENST00000298552.3:c.532_539del	p.Val178ProfsTer37	p.V178Pfs*37	ENST00000298552	NM_001162426.1	178	GTCCATCTc/c																																																																															
ATRX	546	MSKCC	GRCh37	X	76938323	76938323	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	24	490	0	ENST00000373344.5:c.2425C>G	p.Gln809Glu	p.Q809E	ENST00000373344	NM_000489.3	809	Caa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0021525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	46	585	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0021525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	50	748	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
TET1	80312	MSKCC	GRCh37	10	70405078	70405078	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	71	772	0	ENST00000373644.4:c.2592T>A	p.Ser864Arg	p.S864R	ENST00000373644	NM_030625.2	864	agT/agA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151841892	151841892	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	117	615	0	ENST00000262189.6:c.14249A>C	p.Tyr4750Ser	p.Y4750S	ENST00000262189	NM_170606.2	4750	tAt/tCt																																																																															
EP300	2033	MSKCC	GRCh37	22	41573639	41573639	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	73	779	0	ENST00000263253.7:c.5924G>T	p.Gly1975Val	p.G1975V	ENST00000263253	NM_001429.3	1975	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175884	112175884	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	30	371	0	ENST00000257430.4:c.4593del	p.Asn1531LysfsTer34	p.N1531Kfs*34	ENST00000257430	NM_000038.5	1531	aaT/aa																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0021555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	174	383	1	ENST00000412916.2:c.165+1G>T		p.X55_splice	ENST00000412916		55																																																																																
GATA3	2625	MSKCC	GRCh37	10	8115712	8115715	+	frameshift_variant	Frame_Shift_Del	DEL	CCCT	CCCT	-			P-0021555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	120	453	0	ENST00000346208.3:c.1058_1061del	p.Pro353ArgfsTer3	p.P353Rfs*3	ENST00000346208		353	cCCCTg/cg																																																																															
RHEB	6009	MSKCC	GRCh37	7	151164299	151164299	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0021555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	247	659	1	ENST00000262187.5:c.463-2A>G		p.X155_splice	ENST00000262187	NM_005614.3	155																																																																																
IL7R	3575	MSKCC	GRCh37	5	35876449	35876449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2229232		P-0021561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	199	768	1	ENST00000303115.3:c.1241C>T	p.Thr414Met	p.T414M	ENST00000303115	NM_002185.3	414	aCg/aTg																																																																															
AR	367	MSKCC	GRCh37	X	66937371	66937371	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	220	401	0	ENST00000374690.3:c.2225G>T	p.Trp742Leu	p.W742L	ENST00000374690	NM_000044.3	742	tGg/tTg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061288	38061288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	493	769	0	ENST00000250448.2:c.701C>T	p.Ser234Phe	p.S234F	ENST00000250448	NM_004496.3	234	tCc/tTc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727451	66727451	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519729		P-0021563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	172	497	0	ENST00000307102.5:c.167A>C	p.Gln56Pro	p.Q56P	ENST00000307102	NM_002755.3	56	cAg/cCg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	528	528	0				ENST00000310581	NM_198253.2																																																																																	
SMAD4	4089	MSKCC	GRCh37	18	48604787	48604787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	191	499	1	ENST00000342988.3:c.1609G>T	p.Asp537Tyr	p.D537Y	ENST00000342988	NM_005359.5	537	Gac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112174119	112174119	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	183	401	0	ENST00000257430.4:c.2828C>A	p.Ser943Ter	p.S943*	ENST00000257430	NM_000038.5	943	tCa/tAa																																																																															
CIC	23152	MSKCC	GRCh37	19	42794941	42794941	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	283	753	0	ENST00000575354.2:c.2021A>G	p.Asn674Ser	p.N674S	ENST00000575354	NM_015125.3	674	aAt/aGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178937461	178937461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	222	551	0	ENST00000263967.3:c.1849C>T	p.Arg617Trp	p.R617W	ENST00000263967	NM_006218.2	617	Cgg/Tgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910882	114910882	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0021563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	170	485	0	ENST00000543371.1:c.1001C>A	p.Ser334Ter	p.S334*	ENST00000543371	NM_001198531.1	334	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578543	7578556	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GGCAGGGGAGTACT	GGCAGGGGAGTACT	-			P-0021563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	260	884	0	ENST00000269305.4:c.376-2_387del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
APC	324	MSKCC	GRCh37	5	112175609	112175609	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	149	383	0	ENST00000257430.4:c.4319delC	p.Pro1440HisfsTer33	p.P1440Hfs*33	ENST00000257430	NM_000038.5	1440	Cca/ca																																																																															
PRDM1	639	MSKCC	GRCh37	6	106534450	106534450	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	151	377	0	ENST00000369096.4:c.22A>C	p.Lys8Gln	p.K8Q	ENST00000369096	NM_001198.3	8	Aaa/Caa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6043414	6043414	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	22	66	0	ENST00000265849.7:c.260A>G	p.His87Arg	p.H87R	ENST00000265849	NM_000535.5	87	cAt/cGt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89816231	89816231	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	274	787	0	ENST00000389301.3:c.3146T>C	p.Phe1049Ser	p.F1049S	ENST00000389301	NM_000135.2	1049	tTt/tCt																																																																															
MED12	9968	MSKCC	GRCh37	X	70352340	70352343	+	missense_variant	Missense_Mutation	ONP	ACCT	ACCT	GCCG			P-0021564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	29	316	0	ENST00000374080.3:c.4367_4370delinsGCCG	p.His1456_Leu1457delinsArgArg	p.H1456_L1457delinsRR	ENST00000374080		1456	cACCTg/cGCCGg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	305	782	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	269	695	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060896	38061003	+	inframe_deletion	In_Frame_Del	DEL	CGGGCCCGGAGCTTATGGGGGGCGCAGTTGAGGAGGCTGGAGTCTTCAACTCCGAGGCGCCCCCTGTCGCCGTCGCCCCACTGTGGTCCAGAGTCTGGGGGCTGGCGG	CGGGCCCGGAGCTTATGGGGGGCGCAGTTGAGGAGGCTGGAGTCTTCAACTCCGAGGCGCCCCCTGTCGCCGTCGCCCCACTGTGGTCCAGAGTCTGGGGGCTGGCGG	-			P-0021603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	39	669	0	ENST00000250448.2:c.986_1093del	p.Ala329_Pro364del	p.A329_P364del	ENST00000250448	NM_004496.3	329	gCCGCCAGCCCCCAGACTCTGGACCACAGTGGGGCGACGGCGACAGGGGGCGCCTCGGAGTTGAAGACTCCAGCCTCCTCAACTGCGCCCCCCATAAGCTCCGGGCCCGgg/ggg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712892	43712893	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	280	713	0	ENST00000382044.4:c.4291dup	p.Ser1431PhefsTer3	p.S1431Ffs*3	ENST00000382044	NM_001141980.1	1431	tca/tTca																																																																															
ERF	2077	MSKCC	GRCh37	19	42753292	42753292	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	381	1136	2	ENST00000222329.4:c.972C>A	p.Tyr324Ter	p.Y324*	ENST00000222329	NM_006494.2	324	taC/taA																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0021609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	147	549	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061225	38061225	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	154	692	0	ENST00000250448.2:c.764A>G	p.Glu255Gly	p.E255G	ENST00000250448	NM_004496.3	255	gAg/gGg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	49	704	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	89	945	1	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42040746	42041483	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTGTCTTAAAAAATATTATGAATACTTTTTTTTCCTACGTGTGTTAAAGGGGAATTTGGGTACCATGTTTCCATTTCCTGTTTTTCAGAAAATGCTGCTCAAATTCCAGTGGCTACTCCACAGGTCTCTCCTAACACAGTGAAACGTGCTGGACCTCGATTGTTGTTGATTCCAGTGCAGCAGGGTTCTCCTACTCTTAGACCTGTCTCAAACACACAACTTCAGGGACATCGGATGGTCTTGCAGCCTGTTAGGAGTCCAAGTGGAATGAACTTATTCAGGCACCCTAATGGGCAGATTGTCCAGCTTCTACCTTTGCATCAGCTTCGAGGCTCTAATACCCAGCCCAACTTACAGCCTGTCATGTTTCGGAACCCAGGTATAAAGTTCTTTTTTATGAACTTTTCTTTTGTTGAATCACTTGGCCATATGGTATGTTAATACACCAAGATTGTTTTTCTTCATCTCTTAAGAGTTACTTTTCCAAAAAGAAAAGCAAACATTGGAAGTCTTGATATGGGCAGTCATGATTTAAAAATTTCTCTCTTATTTTTTAAACCAGGGTCTGTGATGGGAATCCGGTTACCTGCTCCTTCCAAACCCTCTGAGACTCCGCCATCTTCCACTTCGTCCTCTGCTTTCTCTGTCATGAATCCTGTAATTCAAGCTGTTGGGTCTTCTTCAGCAGTGAATGTTATCACTCAGGCACCATCATTGCTTTCCTCTGGAGCTAGTTT	TGTGTCTTAAAAAATATTATGAATACTTTTTTTTCCTACGTGTGTTAAAGGGGAATTTGGGTACCATGTTTCCATTTCCTGTTTTTCAGAAAATGCTGCTCAAATTCCAGTGGCTACTCCACAGGTCTCTCCTAACACAGTGAAACGTGCTGGACCTCGATTGTTGTTGATTCCAGTGCAGCAGGGTTCTCCTACTCTTAGACCTGTCTCAAACACACAACTTCAGGGACATCGGATGGTCTTGCAGCCTGTTAGGAGTCCAAGTGGAATGAACTTATTCAGGCACCCTAATGGGCAGATTGTCCAGCTTCTACCTTTGCATCAGCTTCGAGGCTCTAATACCCAGCCCAACTTACAGCCTGTCATGTTTCGGAACCCAGGTATAAAGTTCTTTTTTATGAACTTTTCTTTTGTTGAATCACTTGGCCATATGGTATGTTAATACACCAAGATTGTTTTTCTTCATCTCTTAAGAGTTACTTTTCCAAAAAGAAAAGCAAACATTGGAAGTCTTGATATGGGCAGTCATGATTTAAAAATTTCTCTCTTATTTTTTAAACCAGGGTCTGTGATGGGAATCCGGTTACCTGCTCCTTCCAAACCCTCTGAGACTCCGCCATCTTCCACTTCGTCCTCTGCTTTCTCTGTCATGAATCCTGTAATTCAAGCTGTTGGGTCTTCTTCAGCAGTGAATGTTATCACTCAGGCACCATCATTGCTTTCCTCTGGAGCTAGTTT	-			P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	18	109	0	ENST00000219905.7:c.5213-82_5685del		p.X1738_splice	ENST00000219905	NM_001164273.1	1738																																																																																
PALB2	79728	MSKCC	GRCh37	16	23641323	23641323	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	53	1008	0	ENST00000261584.4:c.2152A>T	p.Arg718Trp	p.R718W	ENST00000261584	NM_024675.3	718	Agg/Tgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29496990	29496990	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	212	546	0	ENST00000358273.4:c.561T>A	p.Cys187Ter	p.C187*	ENST00000358273	NM_001042492.2	187	tgT/tgA																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868180	37868180	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	31	885	0	ENST00000269571.5:c.902-1G>C		p.X301_splice	ENST00000269571		301																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11105628	11105628	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	26	1028	0	ENST00000344626.4:c.1544A>C	p.Gln515Pro	p.Q515P	ENST00000344626	NM_003072.3	515	cAg/cCg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965411	25965411	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	90	972	1	ENST00000435504.4:c.3795A>T	p.Leu1265Phe	p.L1265F	ENST00000435504		1265	ttA/ttT																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198260818	198260818	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	53	832	0	ENST00000335508.6:c.3501T>A	p.Tyr1167Ter	p.Y1167*	ENST00000335508	NM_012433.2	1167	taT/taA																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62320850	62320866	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTAGGCCAGCGAGGGG	CCTAGGCCAGCGAGGGG	AGGGAGGGA			P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	44	1139	3	ENST00000508582.2:c.1951-5_1962delinsAGGGAGGGA		p.X651_splice	ENST00000508582		651																																																																																
SETD2	29072	MSKCC	GRCh37	3	47084162	47084162	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	51	738	0	ENST00000409792.3:c.7127T>C	p.Leu2376Ser	p.L2376S	ENST00000409792	NM_014159.6	2376	tTg/tCg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505033	186505033	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	22	455	0	ENST00000323963.5:c.889G>C	p.Asp297His	p.D297H	ENST00000323963		297	Gac/Cac																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289203	33289203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	35	674	0	ENST00000374542.5:c.349C>T	p.Arg117Trp	p.R117W	ENST00000374542	NM_001141970.1	117	Cgg/Tgg																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145472	58145474	+	missense_variant	Missense_Mutation	ONP	GCC	GCC	CCA			P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	75	670	0	ENST00000257904.6:c.27_29delinsTGG	p.Ala10Gly	p.A10G	ENST00000257904	NM_000075.3	9	gtGGCt/gtTGGt																																																																															
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	145	283	1	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991933	72991933	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	44	682	0	ENST00000268489.5:c.2112C>A	p.Cys704Ter	p.C704*	ENST00000268489	NM_006885.3	704	tgC/tgA																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442896	52443586	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGAGAAGAAAAGCTGGAACTGAGGGCCAAGGATGGGACAGGGTAGGAACACAAAGTAAGACAAGAACAAAAACTCTGATGAGGAACTGAGGCACTCCTTCTCACTTGTGGGCCCCAATGCAGTCAGGAAAGCAAATGAACACCCACACCAGTCTCTTTTGTTCCAGGAAATTAAAGTAGACTTCTTGGTTCAGTCACGGTTGCTACTGTTGCTACTCTCTTACACATCTATTCTGCAGGACCACTGGGAAAAGACTCTAAGTGTGGGCACCCAGGAGGGGCCTTGTCACCCCAACCAATCAATACAGGATGACTTTGTGTCAGGATTAAAGCCAAGGACACATGGGCACACTAAAATTAATACATTACACAACTGCACAAAAGACATTGTGTGACCGGGGTCTTCCCGCTGCAAGGCCAGGAAAGCAGCTGAACCAAAGGATGCTTAGGGGTGGGGAGGGGGCTGCTACAAAAAGGGAAGCGCTAAGGAAAGTTTGGGAGAAAAGAAAGTATCAGTTTGATCAGGAGCGGGCACTCAGAGAGCAAGGCTGCTGCTTTCTGTGAGATTTTACAACGTAGGGTTCCTGGCACTGTCTTCCCTAAGGGGCCCTGTTCTCTGGGACCTTCCCCAGCACTCTGGGTGTAAGGGGCAGCCCTGGTGTACAGCCACTCACCCCTGACATTTGCTCTG	AAGAGAAGAAAAGCTGGAACTGAGGGCCAAGGATGGGACAGGGTAGGAACACAAAGTAAGACAAGAACAAAAACTCTGATGAGGAACTGAGGCACTCCTTCTCACTTGTGGGCCCCAATGCAGTCAGGAAAGCAAATGAACACCCACACCAGTCTCTTTTGTTCCAGGAAATTAAAGTAGACTTCTTGGTTCAGTCACGGTTGCTACTGTTGCTACTCTCTTACACATCTATTCTGCAGGACCACTGGGAAAAGACTCTAAGTGTGGGCACCCAGGAGGGGCCTTGTCACCCCAACCAATCAATACAGGATGACTTTGTGTCAGGATTAAAGCCAAGGACACATGGGCACACTAAAATTAATACATTACACAACTGCACAAAAGACATTGTGTGACCGGGGTCTTCCCGCTGCAAGGCCAGGAAAGCAGCTGAACCAAAGGATGCTTAGGGGTGGGGAGGGGGCTGCTACAAAAAGGGAAGCGCTAAGGAAAGTTTGGGAGAAAAGAAAGTATCAGTTTGATCAGGAGCGGGCACTCAGAGAGCAAGGCTGCTGCTTTCTGTGAGATTTTACAACGTAGGGTTCCTGGCACTGTCTTCCCTAAGGGGCCCTGTTCTCTGGGACCTTCCCCAGCACTCTGGGTGTAAGGGGCAGCCCTGGTGTACAGCCACTCACCCCTGACATTTGCTCTG	-			P-0036900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	13	15	0	ENST00000460680.1:c.106_123-274del		p.X36_splice	ENST00000460680	NM_004656.3	36																																																																																
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0038440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	185	363	4	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	343	644	5	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106532	27106532	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	322	647	3	ENST00000324856.7:c.6143G>A	p.Trp2048Ter	p.W2048*	ENST00000324856	NM_006015.4	2048	tGg/tAg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175956084	175956084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	72	257	0	ENST00000367669.3:c.2128G>A	p.Asp710Asn	p.D710N	ENST00000367669	NM_022457.5	710	Gat/Aat																																																																															
ALK	238	MSKCC	GRCh37	2	29416499	29416499	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	272	596	7	ENST00000389048.3:c.4454C>A	p.Pro1485His	p.P1485H	ENST00000389048	NM_004304.4	1485	cCt/cAt																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733444	85733444	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	174	359	4	ENST00000370580.1:c.568A>T	p.Thr190Ser	p.T190S	ENST00000370580	NM_003921.4	190	Act/Tct																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120506209	120506209	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	108	269	4	ENST00000256646.2:c.1903C>G	p.Pro635Ala	p.P635A	ENST00000256646	NM_024408.3	635	Cca/Gca																																																																															
SESN3	143686	MSKCC	GRCh37	11	94911052	94911052	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	167	408	1	ENST00000536441.1:c.1078G>T	p.Gly360Trp	p.G360W	ENST00000536441	NM_144665.3	360	Ggg/Tgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610498	10610498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	357	564	6	ENST00000171111.5:c.212G>A	p.Arg71Gln	p.R71Q	ENST00000171111	NM_203500.1	71	cGg/cAg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11019846	11019846	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	289	472	9	ENST00000327064.4:c.521G>T	p.Arg174Leu	p.R174L	ENST00000327064	NM_199141.1	174	cGc/cTc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61722744	61722744	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	121	273	5	ENST00000401558.2:c.893T>C	p.Leu298Pro	p.L298P	ENST00000401558	NM_003400.3	298	cTt/cCt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31388054	31388054	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	164	260	0	ENST00000328111.2:c.1855G>T	p.Glu619Ter	p.E619*	ENST00000328111	NM_006892.3	619	Gag/Tag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021826	71021826	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0038440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	109	150	3	ENST00000318789.4:c.1532A>C	p.Asn511Thr	p.N511T	ENST00000318789	NM_032682.5	511	aAt/aCt																																																																															
IRF4	3662	MSKCC	GRCh37	6	401495	401495	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	347	291	7	ENST00000380956.4:c.817G>T	p.Gly273Cys	p.G273C	ENST00000380956	NM_001195286.1	273	Ggc/Tgc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6045544	6045544	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	153	229	5	ENST00000265849.7:c.142G>T	p.Asp48Tyr	p.D48Y	ENST00000265849	NM_000535.5	48	Gat/Tat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971035	21971035	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	144	367	3	ENST00000304494.5:c.323A>T	p.Asp108Val	p.D108V	ENST00000304494	NM_000077.4	108	gAt/gTt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061139	38061168	+	inframe_deletion	In_Frame_Del	DEL	CCCCGCTTCCGCTCCCGCCCCCGCCGCCGG	CCCCGCTTCCGCTCCCGCCCCCGCCGCCGG	-			P-0038440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	17	196	0	ENST00000250448.2:c.821_850del	p.Ala274_Gly283del	p.A274_G283del	ENST00000250448	NM_004496.3	274	gCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGgc/ggc																																																																															
HGF	3082	MSKCC	GRCh37	7	81339492	81339496	+	missense_variant	Missense_Mutation	ONP	GTTTG	GTTTG	TTTTT			P-0038440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	79	332	3	ENST00000222390.5:c.1508_1512delinsAAAAA	p.Thr503_Asn504delinsLysLys	p.T503_N504delinsKK	ENST00000222390	NM_000601.4	503	aCAAAC/aAAAAA																																																																															
TP53	7157	MSKCC	GRCh37	17	7579442	7579442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	66	859	0	ENST00000269305.4:c.245del	p.Pro82ArgfsTer41	p.P82Rfs*41	ENST00000269305	NM_001126112.2	82	cCg/cg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0039211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	18	238	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519896		P-0039211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	23	234	1	ENST00000281708.4:c.1514G>A	p.Arg505His	p.R505H	ENST00000281708	NM_033632.3	505	cGc/cAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858403	9858403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	33	322	0	ENST00000330684.3:c.2998G>A	p.Val1000Met	p.V1000M	ENST00000330684	NM_001134407.1	1000	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs878854073		P-0039211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	36	315	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
FOXP1	27086	MSKCC	GRCh37	3	71102861	71102861	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	27	223	0	ENST00000318789.4:c.346del	p.Leu116SerfsTer6	p.L116Sfs*6	ENST00000318789	NM_032682.5	116	Ctc/tc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0039223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	43	477	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
PGR	5241	MSKCC	GRCh37	11	100933432	100933432	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	37	375	1	ENST00000325455.5:c.1958C>A	p.Ala653Asp	p.A653D	ENST00000325455	NM_001202474.3	653	gCt/gAt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163913	152163913	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	28	442	0	ENST00000206249.3:c.634A>T	p.Ser212Cys	p.S212C	ENST00000206249	NM_000125.3	212	Agt/Tgt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111509	8111510	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAATGGGGACCCTGTCTGCAATGCCTGTGGGCTCTACTACAAGCTT			P-0039225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	97	572	0	ENST00000346208.3:c.998_1043dup	p.His348GlnfsTer19	p.H348Qfs*19	ENST00000346208		332	gcc/gcCAATGGGGACCCTGTCTGCAATGCCTGTGGGCTCTACTACAAGCTTc																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26046034	26046035	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	41	267	0	ENST00000540144.1:c.400dupG	p.Glu134GlyfsTer?	p.E134Gfs*?	ENST00000540144	NM_003531.2	132	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0039226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	235	807	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073680	8073680	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	64	431	0	ENST00000377482.5:c.979C>G	p.Pro327Ala	p.P327A	ENST00000377482	NM_018948.3	327	Ccg/Gcg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937863	36937868	+	inframe_deletion	In_Frame_Del	DEL	GGCTGG	GGCTGG	-			P-0039226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	283	1064	0	ENST00000361632.4:c.968_973del	p.Pro323_Ser324del	p.P323_S324del	ENST00000361632		323	cCCAGCCtg/ctg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061186	38061186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	137	396	1	ENST00000250448.2:c.803G>A	p.Cys268Tyr	p.C268Y	ENST00000250448	NM_004496.3	268	tGc/tAc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43705430	43705430	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	113	855	0	ENST00000382044.4:c.5192A>G	p.Lys1731Arg	p.K1731R	ENST00000382044	NM_001141980.1	1731	aAg/aGg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246559	41246559	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	206	658	0	ENST00000357654.3:c.989del	p.Asp330ValfsTer11	p.D330Vfs*11	ENST00000357654	NM_007294.3	330	gAt/gt																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870996	12870996	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039247-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	125	343	0	ENST00000228872.4:c.223G>T	p.Glu75Ter	p.E75*	ENST00000228872	NM_004064.3	75	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0039248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	62	302	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0039248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	219	648	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	28	166	0	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa																																																																															
ATRX	546	MSKCC	GRCh37	X	76763832	76763832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	39	400	1	ENST00000373344.5:c.7476G>A	p.Met2492Ile	p.M2492I	ENST00000373344	NM_000489.3	2492	atG/atA																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17384968	17384968	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	97	625	0	ENST00000359435.4:c.518T>A	p.Leu173Gln	p.L173Q	ENST00000359435	NM_001033549.1	173	cTg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	10	319	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584593	48584593	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	27	319	0	ENST00000342988.3:c.766C>T	p.Gln256Ter	p.Q256*	ENST00000342988	NM_005359.5	256	Cag/Tag																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14300947	14300947	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	18	280	0	ENST00000256196.4:c.551C>G	p.Pro184Arg	p.P184R	ENST00000256196		184	cCt/cGt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464578	25464578	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0039271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	26	444	0	ENST00000264709.3:c.1937-2A>T		p.X646_splice	ENST00000264709	NM_175629.2	646																																																																																
TP53	7157	MSKCC	GRCh37	17	7578485	7578487	+	inframe_deletion	In_Frame_Del	DEL	AAT	AAT	-			P-0039300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	325	599	0	ENST00000269305.4:c.443_445del	p.Asp148_Ser149delinsAla	p.D148_S149delinsA	ENST00000269305	NM_001126112.2	148	gATTcc/gcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	133	306	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0039306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	183	309	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0039306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	168	360	0	ENST00000269305.4:c.993+2T>C		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118370116	118370116	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	137	249	0	ENST00000534358.1:c.6060A>C	p.Glu2020Asp	p.E2020D	ENST00000534358	NM_005933.3	2020	gaA/gaC																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636799	176636799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	125	379	0	ENST00000439151.2:c.1399G>A	p.Glu467Lys	p.E467K	ENST00000439151	NM_022455.4	467	Gaa/Aaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0039307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	82	272	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918582	44918582	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	23	179	0	ENST00000377967.4:c.1065G>A	p.Trp355Ter	p.W355*	ENST00000377967	NM_021140.2	355	tgG/tgA																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	139	519	0	ENST00000269571.5:c.2329G>C	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ctg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022535	12022535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	132	469	1	ENST00000396373.4:c.641C>T	p.Pro214Leu	p.P214L	ENST00000396373	NM_001987.4	214	cCg/cTg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285754	87285754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	107	398	2	ENST00000277120.3:c.91G>A	p.Ala31Thr	p.A31T	ENST00000277120		31	Gcc/Acc																																																																															
BARD1	580	MSKCC	GRCh37	2	215595140	215595140	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	51	240	0	ENST00000260947.4:c.1996C>T	p.Gln666Ter	p.Q666*	ENST00000260947	NM_000465.2	666	Cag/Tag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715688	30715688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	32	269	0	ENST00000359013.4:c.1421C>T	p.Ser474Phe	p.S474F	ENST00000359013	NM_001024847.2	474	tCc/tTc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324203	31324203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	59	271	0	ENST00000412585.2:c.360G>C	p.Gln120His	p.Q120H	ENST00000412585	NM_005514.6	120	caG/caC																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341742	8341742	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	96	372	0	ENST00000356435.5:c.4898C>A	p.Thr1633Lys	p.T1633K	ENST00000356435		1633	aCa/aAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0039142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	127	684	0	ENST00000269305.4:c.365_366delTG	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	63	492	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0039143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	174	976	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0039143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	71	514	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770587	40770587	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776338672		P-0039143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	49	579	0	ENST00000373198.4:c.2795G>A	p.Arg932His	p.R932H	ENST00000373198	NM_133170.3	932	cGc/cAc																																																																															
GNA11	2767	MSKCC	GRCh37	19	3121008	3121008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	68	924	1	ENST00000078429.4:c.911C>T	p.Ala304Val	p.A304V	ENST00000078429	NM_002067.2	304	gCg/gTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	116	775	0	ENST00000304494.5:c.247del	p.His83ThrfsTer63	p.H83Tfs*63	ENST00000304494	NM_000077.4	83	Cac/ac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0039146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	300	635	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241672	55241672	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	367	848	0	ENST00000275493.2:c.2120T>G	p.Leu707Trp	p.L707W	ENST00000275493	NM_005228.3	707	tTg/tGg																																																																															
RB1	5925	MSKCC	GRCh37	13	48919239	48919239	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	43	181	0	ENST00000267163.4:c.404T>C	p.Leu135Pro	p.L135P	ENST00000267163	NM_000321.2	135	cTa/cCa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164484	47164484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	76	390	0	ENST00000409792.3:c.1642C>T	p.His548Tyr	p.H548Y	ENST00000409792	NM_014159.6	548	Cat/Tat																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209319	98209319	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56161606		P-0039146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	55	883	0	ENST00000331920.6:c.4219G>A	p.Gly1407Ser	p.G1407S	ENST00000331920	NM_000264.3	1407	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	139	336	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0039147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	20	492	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0039147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	38	691	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0039147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	308	764	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
APC	324	MSKCC	GRCh37	5	112174241	112174241	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	94	392	1	ENST00000257430.4:c.2950G>T	p.Glu984Ter	p.E984*	ENST00000257430	NM_000038.5	984	Gaa/Taa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440716	56440716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	30	590	0	ENST00000407977.2:c.502G>A	p.Asp168Asn	p.D168N	ENST00000407977		168	Gac/Aac																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724277	112724277	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	167	528	0	ENST00000369452.4:c.161A>T	p.Lys54Met	p.K54M	ENST00000369452	NM_007373.3	54	aAg/aTg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867155	45867155	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	283	777	0	ENST00000391945.4:c.964T>C	p.Ser322Pro	p.S322P	ENST00000391945	NM_000400.3	322	Tcc/Ccc																																																																															
APC	324	MSKCC	GRCh37	5	112175572	112175573	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGACAAACCATGCCACCAAGCA			P-0039147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	73	370	0	ENST00000257430.4:c.4283_4304dup	p.Ser1436ThrfsTer9	p.S1436Tfs*9	ENST00000257430	NM_000038.5	1427	-/GGACAAACCATGCCACCAAGCA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879610	151879610	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	111	296	0	ENST00000262189.6:c.5335G>T	p.Glu1779Ter	p.E1779*	ENST00000262189	NM_170606.2	1779	Gag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151896362	151896362	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0039147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	171	381	0	ENST00000262189.6:c.4273+2T>G		p.X1425_splice	ENST00000262189	NM_170606.2	1425																																																																																
TSHR	7253	MSKCC	GRCh37	14	81574753	81574753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	23	311	0	ENST00000298171.2:c.649G>A	p.Asp217Asn	p.D217N	ENST00000298171	NM_000369.2	217	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578509	7578509	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	240	945	0	ENST00000269305.4:c.421del	p.Cys141AlafsTer29	p.C141Afs*29	ENST00000269305	NM_001126112.2	141	Tgc/gc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244421	5244421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	43	857	2	ENST00000357368.4:c.1061C>T	p.Ser354Leu	p.S354L	ENST00000357368	NM_002850.3	354	tCg/tTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713398	40713398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	33	753	1	ENST00000373198.4:c.4117C>A	p.Leu1373Ile	p.L1373I	ENST00000373198	NM_133170.3	1373	Ctc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112137041	112137042	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0039175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	73	495	0	ENST00000257430.4:c.797_798dup	p.Gly267TrpfsTer27	p.G267Wfs*27	ENST00000257430	NM_000038.5	265	-/GT																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401203	139401203	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	142	830	1	ENST00000277541.6:c.3866A>G	p.Asn1289Ser	p.N1289S	ENST00000277541	NM_017617.3	1289	aAt/aGt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123200089	123200089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	90	284	1	ENST00000218089.9:c.2161G>A	p.Glu721Lys	p.E721K	ENST00000218089	NM_001042749.1	721	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0039177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	35	219	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0039177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	54	327	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	100	626	0	ENST00000269305.4:c.332T>A	p.Leu111Gln	p.L111Q	ENST00000269305	NM_001126112.2	111	cTg/cAg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741443	145741443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	64	750	1	ENST00000428558.2:c.1060G>A	p.Val354Ile	p.V354I	ENST00000428558	NM_004260.3	354	Gta/Ata																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524363	187524363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	29	366	0	ENST00000441802.2:c.11317C>T	p.Arg3773Cys	p.R3773C	ENST00000441802	NM_005245.3	3773	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	102	255	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0039187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	75	365	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120151	70120152	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0039187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	135	303	1	ENST00000245479.2:c.1154_1155dup	p.Ser386Ter	p.S386*	ENST00000245479	NM_000346.3	385	ctg/cTGtg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955186	17955186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	178	775	2	ENST00000458235.1:c.41G>A	p.Arg14His	p.R14H	ENST00000458235	NM_000215.3	14	cGt/cAt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714731	52714731	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	119	557	0	ENST00000322088.6:c.489G>C	p.Lys163Asn	p.K163N	ENST00000322088	NM_014225.5	163	aaG/aaC																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070400	37070400	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	53	305	0	ENST00000231790.2:c.1535A>C	p.Glu512Ala	p.E512A	ENST00000231790	NM_000249.3	512	gAa/gCa																																																																															
RHOA	387	MSKCC	GRCh37	3	49399935	49399935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	87	392	1	ENST00000418115.1:c.402G>A	p.Met134Ile	p.M134I	ENST00000418115	NM_001664.2	134	atG/atA																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71015209	71015210	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TG	TG	-			P-0039187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	25	192	0	ENST00000318789.4:c.1723-3_1723-2del		p.X575_splice	ENST00000318789	NM_032682.5	575																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0039124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	106	833	3	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0039124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	146	557	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112175466	112175466	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs786204170		P-0039124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	78	391	0	ENST00000257430.4:c.4175C>A	p.Ser1392Ter	p.S1392*	ENST00000257430	NM_000038.5	1392	tCa/tAa																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983127	149983127	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	50	722	0	ENST00000253339.5:c.3131del	p.Pro1044LeufsTer14	p.P1044Lfs*14	ENST00000253339		1044	cCt/ct																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426830	121426830	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201934320		P-0039129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	36	500	0	ENST00000257555.6:c.521C>T	p.Ala174Val	p.A174V	ENST00000257555		174	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576885	7576885	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0039129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	124	692	0	ENST00000269305.4:c.961A>T	p.Lys321Ter	p.K321*	ENST00000269305	NM_001126112.2	321	Aaa/Taa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	33	315	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0039129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	219	581	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021817	71021817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	11	212	0	ENST00000318789.4:c.1541G>A	p.Arg514His	p.R514H	ENST00000318789	NM_032682.5	514	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0039131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	36	725	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285570	46285570	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs78222561		P-0039131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	20	289	0	ENST00000334344.6:c.4930C>T	p.Gln1644Ter	p.Q1644*	ENST00000334344	NM_152641.2	1644	Cag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29679299	29679299	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	38	378	0	ENST00000358273.4:c.7482G>A	p.Trp2494Ter	p.W2494*	ENST00000358273	NM_001042492.2	2494	tgG/tgA																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831999	72831999	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0039131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	13	687	0	ENST00000268489.5:c.4582A>T	p.Arg1528Ter	p.R1528*	ENST00000268489	NM_006885.3	1528	Aga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29679315	29679315	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	40	419	0	ENST00000358273.4:c.7498T>G	p.Ser2500Ala	p.S2500A	ENST00000358273	NM_001042492.2	2500	Tct/Gct																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	216	468	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370945	55370945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	202	725	1	ENST00000297316.4:c.247C>T	p.Arg83Cys	p.R83C	ENST00000297316	NM_022454.3	83	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	389	841	0	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213843	66213843	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	79	491	0	ENST00000273854.3:c.2587A>T	p.Ser863Cys	p.S863C	ENST00000273854	NM_004439.5	863	Agt/Tgt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21636409	21636409	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	194	597	0	ENST00000421138.2:c.601A>G	p.Met201Val	p.M201V	ENST00000421138		201	Atg/Gtg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292411	15292411	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	290	831	0	ENST00000263388.2:c.2768A>C	p.Gln923Pro	p.Q923P	ENST00000263388	NM_000435.2	923	cAg/cCg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264671	46264671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	172	376	0	ENST00000371998.3:c.1541G>T	p.Gly514Val	p.G514V	ENST00000371998		514	gGg/gTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251974	153251974	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	92	560	0	ENST00000281708.4:c.1032del	p.Gly345ValfsTer32	p.G345Vfs*32	ENST00000281708	NM_033632.3	344	ccA/cc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576459	67576459	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	112	351	0	ENST00000274335.5:c.740del	p.Phe247SerfsTer13	p.F247Sfs*13	ENST00000274335		246	caT/ca																																																																															
APC	324	MSKCC	GRCh37	5	112137018	112137019	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	220	487	0	ENST00000257430.4:c.773dup	p.Arg259AlafsTer4	p.R259Afs*4	ENST00000257430	NM_000038.5	258	gag/gAag																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056399	26056399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	67	377	0	ENST00000343677.2:c.258C>A	p.Ser86Arg	p.S86R	ENST00000343677	NM_005319.3	86	agC/agA																																																																															
PREX2	80243	MSKCC	GRCh37	8	68984737	68984737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	74	338	1	ENST00000288368.4:c.1501G>T	p.Asp501Tyr	p.D501Y	ENST00000288368	NM_024870.2	501	Gat/Tat																																																																															
ATRX	546	MSKCC	GRCh37	X	76939030	76939030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	193	664	0	ENST00000373344.5:c.1718G>A	p.Gly573Asp	p.G573D	ENST00000373344	NM_000489.3	573	gGt/gAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0039046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	50	541	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	159	302	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094455	27094456	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	141	460	0	ENST00000324856.7:c.3164_3165delAT	p.Tyr1055CysfsTer49	p.Y1055Cfs*49	ENST00000324856	NM_006015.4	1055	TAt/t																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944864	31944864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	89	564	0	ENST00000340398.3:c.237C>A	p.Asn79Lys	p.N79K	ENST00000340398	NM_001013699.2	79	aaC/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	359	496	0	ENST00000269305.4:c.375+1delG		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
H3F3C	440093	MSKCC	GRCh37	12	31944836	31944836	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148314204		P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1217	134	763	0	ENST00000340398.3:c.265G>A	p.Val89Ile	p.V89I	ENST00000340398	NM_001013699.2	89	Gtc/Atc																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944789	31944789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	119	517	0	ENST00000340398.3:c.312G>C	p.Leu104Phe	p.L104F	ENST00000340398	NM_001013699.2	104	ttG/ttC																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944989	31944990	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTT			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	127	766	0	ENST00000340398.3:c.109_111dup	p.Lys37dup	p.K37dup	ENST00000340398	NM_001013699.2	37	-/AAG																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945001	31945001	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1154	125	772	0	ENST00000340398.3:c.100T>G	p.Cys34Gly	p.C34G	ENST00000340398	NM_001013699.2	34	Tgc/Ggc																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945013	31945013	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	107	753	0	ENST00000340398.3:c.88A>G	p.Thr30Ala	p.T30A	ENST00000340398	NM_001013699.2	30	Acc/Gcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443860	49443861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	210	735	0	ENST00000301067.7:c.3509_3510dup	p.Glu1171ProfsTer42	p.E1171Pfs*42	ENST00000301067	NM_003482.3	1170	-/CC																																																																															
POLE	5426	MSKCC	GRCh37	12	133249853	133249853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	127	442	0	ENST00000320574.5:c.1370C>T	p.Thr457Met	p.T457M	ENST00000320574	NM_006231.2	457	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829102	72829102	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	240	557	0	ENST00000268489.5:c.7479del	p.Leu2494TyrfsTer34	p.L2494Yfs*34	ENST00000268489	NM_006885.3	2493	ccC/cc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610364	10610364	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	283	686	0	ENST00000171111.5:c.346C>G	p.Arg116Gly	p.R116G	ENST00000171111	NM_203500.1	116	Cgg/Ggg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561333	9561333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	134	387	0	ENST00000353224.5:c.449G>T	p.Ser150Ile	p.S150I	ENST00000353224	NM_177990.2	150	aGt/aTt																																																																															
KIT	3815	MSKCC	GRCh37	4	55564521	55564521	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	146	495	0	ENST00000288135.5:c.409C>G	p.Pro137Ala	p.P137A	ENST00000288135	NM_000222.2	137	Cct/Gct																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876452	35876452	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	378	550	0	ENST00000303115.3:c.1244T>A	p.Leu415Gln	p.L415Q	ENST00000303115	NM_002185.3	415	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0039050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	399	490	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
RB1	5925	MSKCC	GRCh37	13	49030485	49030485	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	200	260	0	ENST00000267163.4:c.1960G>A	p.Val654Met	p.V654M	ENST00000267163	NM_000321.2	654	Gtg/Atg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170102	32170102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1293	478	805	2	ENST00000375023.3:c.3506G>A	p.Arg1169Gln	p.R1169Q	ENST00000375023	NM_004557.3	1169	cGg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242484	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAGCAACAT	TTAAGAGAAGCAACAT	CAAC			P-0039050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1199	5730	342	1	ENST00000275493.2:c.2239_2254delinsCAAC	p.Leu747_Ser752delinsGlnPro	p.L747_S752delinsQP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAACATct/CAACct																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53241009	53241009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	390	297	0	ENST00000375401.3:c.1202C>T	p.Ala401Val	p.A401V	ENST00000375401	NM_004187.3	401	gCc/gTc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	150	482	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63817028	63817028	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	86	280	0	ENST00000279873.7:c.999A>C	p.Lys333Asn	p.K333N	ENST00000279873	NM_032199.2	333	aaA/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0039055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	195	721	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112175248	112175249	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0039055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	33	232	0	ENST00000257430.4:c.3959_3960delTG	p.Val1320GlufsTer11	p.V1320Efs*11	ENST00000257430	NM_000038.5	1319	ccTGtg/cctg																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0039055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	36	344	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434953	110434953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	51	604	0	ENST00000375856.3:c.3448G>A	p.Glu1150Lys	p.E1150K	ENST00000375856	NM_003749.2	1150	Gag/Aag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212450	5212450	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1196839847		P-0039055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	202	651	0	ENST00000357368.4:c.4667C>T	p.Pro1556Leu	p.P1556L	ENST00000357368	NM_002850.3	1556	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	4	312	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0039085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	13	292	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0039088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	40	316	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175324	112175324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	62	180	0	ENST00000257430.4:c.4033G>T	p.Glu1345Ter	p.E1345*	ENST00000257430	NM_000038.5	1345	Gaa/Taa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210796	5210796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	88	543	2	ENST00000357368.4:c.5255C>T	p.Ala1752Val	p.A1752V	ENST00000357368	NM_002850.3	1752	gCg/gTg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265544	152265544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	66	429	1	ENST00000206249.3:c.997C>T	p.Pro333Ser	p.P333S	ENST00000206249	NM_000125.3	333	Cct/Tct																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	83	318	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448310	56448310	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	214	569	0	ENST00000407977.2:c.337C>T	p.Arg113Ter	p.R113*	ENST00000407977		113	Cga/Tga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105561	11105561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	202	550	1	ENST00000344626.4:c.1477G>A	p.Val493Ile	p.V493I	ENST00000344626	NM_003072.3	493	Gtc/Atc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89831345	89831346	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0039092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	178	519	2	ENST00000389301.3:c.2730_2731del	p.Trp911AspfsTer31	p.W911Dfs*31	ENST00000389301	NM_000135.2	910	ctCTgg/ctgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873120	151873280	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCGTCTCAAAACAAAACAAACAAACTCCTCAAGGAGGAATAGAAAAACTCAGTGCTTTATTCCAACTGTAATTCTAATAATAAAATCTTATAAGCATATCGCATGCCACTCTAATACCCATAGTAATATACGTTGAGACTCAAGAAAACTCCTACCAATA	TCCGTCTCAAAACAAAACAAACAAACTCCTCAAGGAGGAATAGAAAAACTCAGTGCTTTATTCCAACTGTAATTCTAATAATAAAATCTTATAAGCATATCGCATGCCACTCTAATACCCATAGTAATATACGTTGAGACTCAAGAAAACTCCTACCAATA	-			P-0039092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	32	38	0	ENST00000262189.6:c.9258_9262+156del		p.X3086_splice	ENST00000262189	NM_170606.2	3086																																																																																
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0039209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	561	517	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	53	317	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0039209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	321	457	1	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223023	5223023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	238	744	2	ENST00000357368.4:c.2780C>T	p.Thr927Met	p.T927M	ENST00000357368	NM_002850.3	927	aCg/aTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509966	106509966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	254	485	0	ENST00000359195.3:c.1960G>A	p.Asp654Asn	p.D654N	ENST00000359195	NM_002649.2	654	Gat/Aat																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627710	37627710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1144	135	678	0	ENST00000447079.4:c.1625C>A	p.Thr542Asn	p.T542N	ENST00000447079	NM_015083.1	542	aCt/aAt																																																																															
APC	324	MSKCC	GRCh37	5	112170863	112170863	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0039209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	144	350	1	ENST00000257430.4:c.1958+1G>T		p.X653_splice	ENST00000257430	NM_000038.5	653																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157099423	157099424	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	TT			P-0039209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	325	261	0	ENST00000346085.5:c.360_361delinsTT	p.Gln120_Gln121delinsHisTer	p.Q120_Q121delinsH*	ENST00000346085	NM_020732.3	120	caGCaa/caTTaa																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	179	506	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513451	149513451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	54	474	0	ENST00000261799.4:c.752G>A	p.Arg251His	p.R251H	ENST00000261799	NM_002609.3	251	cGc/cAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874713	151874713	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	54	344	2	ENST00000262189.6:c.7825C>T	p.Arg2609Ter	p.R2609*	ENST00000262189	NM_170606.2	2609	Cga/Tga																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741556	17741556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	44	367	1	ENST00000250003.3:c.227G>A	p.Arg76His	p.R76H	ENST00000250003	NM_002478.4	76	cGt/cAt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468409	89468409	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	50	229	0	ENST00000336596.2:c.1943T>G	p.Ile648Ser	p.I648S	ENST00000336596	NM_005233.5	648	aTt/aGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	114	344	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EED	8726	MSKCC	GRCh37	11	85967458	85967458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	89	309	0	ENST00000263360.6:c.456G>T	p.Trp152Cys	p.W152C	ENST00000263360	NM_003797.3	152	tgG/tgT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602926	10602926	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	287	658	1	ENST00000171111.5:c.652G>T	p.Glu218Ter	p.E218*	ENST00000171111	NM_203500.1	218	Gag/Tag																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881686	111881686	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	110	508	0	ENST00000393256.3:c.364C>T	p.Gln122Ter	p.Q122*	ENST00000393256	NM_006538.4	122	Cag/Tag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675666	30675666	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	260	630	1	ENST00000376406.3:c.2690C>A	p.Ser897Tyr	p.S897Y	ENST00000376406	NM_014641.2	897	tCt/tAt																																																																															
BTK	695	MSKCC	GRCh37	X	100611146	100611146	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	198	265	1	ENST00000308731.7:c.1460G>C	p.Arg487Thr	p.R487T	ENST00000308731	NM_000061.2	487	aGg/aCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	27	257	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779451	3779451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	93	962	1	ENST00000262367.5:c.5597G>A	p.Arg1866His	p.R1866H	ENST00000262367	NM_004380.2	1866	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	89	724	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584753	48584753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	44	289	0	ENST00000342988.3:c.831del	p.Pro278LeufsTer58	p.P278Lfs*58	ENST00000342988	NM_005359.5	277	acA/ac																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120231	94120231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	25	166	0	ENST00000369303.4:c.820G>A	p.Asp274Asn	p.D274N	ENST00000369303	NM_004440.3	274	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	9	345	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101342	27101342	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	54	713	1	ENST00000324856.7:c.4624G>T	p.Glu1542Ter	p.E1542*	ENST00000324856	NM_006015.4	1542	Gaa/Taa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15284969	15284969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	75	1025	2	ENST00000263388.2:c.4646C>T	p.Ala1549Val	p.A1549V	ENST00000263388	NM_000435.2	1549	gCg/gTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40747086	40747086	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	38	564	0	ENST00000373198.4:c.2996C>A	p.Ser999Tyr	p.S999Y	ENST00000373198	NM_133170.3	999	tCc/tAc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654633	67654633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	35	379	0	ENST00000264010.4:c.1120A>G	p.Thr374Ala	p.T374A	ENST00000264010	NM_006565.3	374	Act/Gct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578254	7578259	+	inframe_deletion	In_Frame_Del	DEL	CTTCCA	CTTCCA	-			P-0039027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	48	647	0	ENST00000269305.4:c.590_595del	p.Val197_Glu198del	p.V197_E198del	ENST00000269305	NM_001126112.2	197	gTGGAAGga/gga																																																																															
ALK	238	MSKCC	GRCh37	2	29446232	29446232	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	37	525	1	ENST00000389048.3:c.3335C>A	p.Pro1112Gln	p.P1112Q	ENST00000389048	NM_004304.4	1112	cCg/cAg																																																																															
ALK	238	MSKCC	GRCh37	2	29940519	29940519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	27	376	0	ENST00000389048.3:c.712C>T	p.Pro238Ser	p.P238S	ENST00000389048	NM_004304.4	238	Cct/Tct																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46602941	46602941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	56	695	1	ENST00000263734.3:c.999G>T	p.Gln333His	p.Q333H	ENST00000263734	NM_001430.4	333	caG/caT																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382259	152382259	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0039027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	18	239	0	ENST00000206249.3:c.1369G>T	p.Gly457Ter	p.G457*	ENST00000206249	NM_000125.3	457	Gga/Tga																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390704	139390704	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	89	972	0	ENST00000277541.6:c.7487A>G	p.Asn2496Ser	p.N2496S	ENST00000277541	NM_017617.3	2496	aAc/aGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0039029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	137	458	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241678	55241678	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs397517085		P-0039029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	165	653	0	ENST00000275493.2:c.2126A>C	p.Glu709Ala	p.E709A	ENST00000275493	NM_005228.3	709	gAa/gCa																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872909	35872909	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	39	324	0	ENST00000216797.5:c.323A>G	p.Asn108Ser	p.N108S	ENST00000216797	NM_020529.2	108	aAc/aGc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030557	48030557	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0039029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	21	222	0	ENST00000234420.5:c.3173-2A>T		p.X1058_splice	ENST00000234420	NM_000179.2	1058																																																																																
APC	324	MSKCC	GRCh37	5	112175746	112175746	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	19	192	2	ENST00000257430.4:c.4455del	p.Asp1486IlefsTer21	p.D1486Ifs*21	ENST00000257430	NM_000038.5	1485	gcT/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	90	347	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0039042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	265	580	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0039042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	270	471	2	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	190	228	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9783347	9783347	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148984508		P-0039042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	229	433	1	ENST00000377346.4:c.2591C>T	p.Pro864Leu	p.P864L	ENST00000377346	NM_005026.3	864	cCg/cTg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561571	9561571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	246	351	2	ENST00000353224.5:c.211G>A	p.Val71Ile	p.V71I	ENST00000353224	NM_177990.2	71	Gtt/Att																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226252097	226252099	+	missense_variant	Missense_Mutation	ONP	AGC	AGC	CGT			P-0039042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	35	76	0	ENST00000366813.1:c.45_47delinsCGT	p.Lys15_Ala16delinsAsnVal	p.K15_A16delinsNV	ENST00000366813		15	aaAGCa/aaCGTa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	102	332	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	457	557	1	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175536	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	83	291	0	ENST00000257430.4:c.4245del	p.Ser1415ArgfsTer4	p.S1415Rfs*4	ENST00000257430	NM_000038.5	1415	agT/ag																																																																															
APC	324	MSKCC	GRCh37	5	112173730	112173730	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	64	279	0	ENST00000257430.4:c.2442del	p.Phe814LeufsTer6	p.F814Lfs*6	ENST00000257430	NM_000038.5	813	aaT/aa																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114546	73114547	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0039058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	41	201	0	ENST00000356692.5:c.929_930del		p.X310_splice	ENST00000356692		310																																																																																
KNSTRN	90417	MSKCC	GRCh37	15	40675097	40675097	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	193	673	1	ENST00000249776.8:c.61G>T	p.Glu21Ter	p.E21*	ENST00000249776	NM_033286.3	21	Gag/Tag																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473726	67473726	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	223	531	0	ENST00000327367.4:c.806T>C	p.Phe269Ser	p.F269S	ENST00000327367	NM_005902.3	269	tTc/tCc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251986	153251986	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	115	391	0	ENST00000281708.4:c.1020del	p.Val341Ter	p.V341*	ENST00000281708	NM_033632.3	340	aaA/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0039061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	210	499	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032155	26032155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	77	367	0	ENST00000244661.2:c.134G>T	p.Gly45Val	p.G45V	ENST00000244661	NM_003537.3	45	gGc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426253	49426253	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	139	799	0	ENST00000301067.7:c.12235C>T	p.Gln4079Ter	p.Q4079*	ENST00000301067	NM_003482.3	4079	Caa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29664433	29664433	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	127	428	0	ENST00000358273.4:c.6477del	p.Lys2160AsnfsTer40	p.K2160Nfs*40	ENST00000358273	NM_001042492.2	2159	Ccc/cc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78897417	78897417	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	227	614	0	ENST00000306801.3:c.2752C>G	p.Pro918Ala	p.P918A	ENST00000306801	NM_020761.2	918	Cct/Gct																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584615	48584615	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0039063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	27	339	0	ENST00000342988.3:c.787+1G>A		p.X263_splice	ENST00000342988	NM_005359.5	263																																																																																
MSH3	4437	MSKCC	GRCh37	5	80024718	80024718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	19	378	0	ENST00000265081.6:c.1502G>A	p.Cys501Tyr	p.C501Y	ENST00000265081	NM_002439.4	501	tGc/tAc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265551	152265551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	93	441	1	ENST00000206249.3:c.1004G>T	p.Arg335Ile	p.R335I	ENST00000206249	NM_000125.3	335	aGa/aTa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739896	41739896	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	41	402	0	ENST00000242208.4:c.77C>A	p.Ser26Tyr	p.S26Y	ENST00000242208	NM_002192.2	26	tCc/tAc																																																																															
HGF	3082	MSKCC	GRCh37	7	81359076	81359076	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	35	327	0	ENST00000222390.5:c.885C>A	p.Asp295Glu	p.D295E	ENST00000222390	NM_000601.4	295	gaC/gaA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0039065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	125	471	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0039065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	129	573	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578218	7578218	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	77	650	0	ENST00000269305.4:c.631A>G	p.Thr211Ala	p.T211A	ENST00000269305	NM_001126112.2	211	Act/Gct																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47612304	47612304	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0039065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	29	315	0	ENST00000263735.4:c.859-1G>T		p.X287_splice	ENST00000263735	NM_002354.2	287																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	238	401	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0038811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	285	433	2	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	452	769	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
RB1	5925	MSKCC	GRCh37	13	49039430	49039430	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0038811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	297	505	0	ENST00000267163.4:c.2415T>G	p.Tyr805Ter	p.Y805*	ENST00000267163	NM_000321.2	805	taT/taG																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151846152	151846152	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0038811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	268	469	0	ENST00000262189.6:c.12860T>A	p.Leu4287Ter	p.L4287*	ENST00000262189	NM_170606.2	4287	tTg/tAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8633425	8633425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	176	391	0	ENST00000356435.5:c.244C>T	p.Leu82Phe	p.L82F	ENST00000356435		82	Ctc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0038813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	49	268	1	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520155	9520155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	56	365	0	ENST00000353224.5:c.2114C>A	p.Pro705Gln	p.P705Q	ENST00000353224	NM_177990.2	705	cCa/cAa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222061	2222061	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	142	694	0	ENST00000398665.3:c.2893T>A	p.Leu965Met	p.L965M	ENST00000398665	NM_032482.2	965	Ttg/Atg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38953635	38953635	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0038813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	30	123	0	ENST00000357387.3:c.2718T>A	p.Cys906Ter	p.C906*	ENST00000357387	NM_152756.3	906	tgT/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0038815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	22	421	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
STK11	6794	MSKCC	GRCh37	19	1207065	1207065	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	54	764	0	ENST00000326873.7:c.157delG	p.Asp53ThrfsTer11	p.D53Tfs*11	ENST00000326873	NM_000455.4	51	atG/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	220	385	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913324		P-0038821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	325	719	1	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	279	679	0	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180037025	180037025	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0038821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	173	556	0	ENST00000261937.6:c.3687G>T	p.Arg1229Ser	p.R1229S	ENST00000261937	NM_182925.4	1229	agG/agT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55210101	55210101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	44	363	0	ENST00000275493.2:c.211C>G	p.Gln71Glu	p.Q71E	ENST00000275493	NM_005228.3	71	Cag/Gag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69009287	69009287	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	320	401	0	ENST00000288368.4:c.2404G>C	p.Asp802His	p.D802H	ENST00000288368	NM_024870.2	802	Gat/Cat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486014	8486014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	173	506	0	ENST00000356435.5:c.2803G>T	p.Val935Phe	p.V935F	ENST00000356435		935	Gtc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0038825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	129	532	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112174784	112174784	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0038825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	54	290	0	ENST00000257430.4:c.3493A>T	p.Lys1165Ter	p.K1165*	ENST00000257430	NM_000038.5	1165	Aaa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	150	524	2	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646279	3646279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1136	95	803	1	ENST00000294008.3:c.1799C>T	p.Pro600Leu	p.P600L	ENST00000294008	NM_032444.2	600	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112174533	112174533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	67	339	0	ENST00000257430.4:c.3242G>A	p.Ser1081Asn	p.S1081N	ENST00000257430	NM_000038.5	1081	aGc/aAc																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0038827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	90	319	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398287	25398288	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTC			P-0038827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	104	369	0	ENST00000256078.4:c.29_31dup	p.Gly10dup	p.G10dup	ENST00000256078	NM_033360.2	10	gct/gGAGct																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274899	41274899	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	120	348	0	ENST00000349496.5:c.1149G>T	p.Trp383Cys	p.W383C	ENST00000349496	NM_001904.3	383	tgG/tgT																																																																															
BARD1	580	MSKCC	GRCh37	2	215595191	215595191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	51	300	0	ENST00000260947.4:c.1945G>A	p.Glu649Lys	p.E649K	ENST00000260947	NM_000465.2	649	Gaa/Aaa																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797721	45797721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	247	706	0	ENST00000372115.3:c.929C>T	p.Ser310Leu	p.S310L	ENST00000372115	NM_001048171.1	310	tCg/tTg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193219805	193219805	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0038827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	45	204	0	ENST00000367435.3:c.1560-1G>T		p.X520_splice	ENST00000367435	NM_024529.4	520																																																																																
SOX9	6662	MSKCC	GRCh37	17	70119952	70119953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	100	431	0	ENST00000245479.2:c.955dup	p.Tyr319LeufsTer259	p.Y319Lfs*259	ENST00000245479	NM_000346.3	318	-/T																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593388	48593408	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GGTTGCACATAGGCAAAGGTG	GGTTGCACATAGGCAAAGGTG	-			P-0038827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	68	258	0	ENST00000342988.3:c.1140-1_1159del		p.X380_splice	ENST00000342988	NM_005359.5	380																																																																																
APC	324	MSKCC	GRCh37	5	112174607	112174607	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	133	356	0	ENST00000257430.4:c.3316G>T	p.Gly1106Ter	p.G1106*	ENST00000257430	NM_000038.5	1106	Gga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	75	357	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0038852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	11	443	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602869	10602869	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	99	815	0	ENST00000171111.5:c.709C>G	p.Leu237Val	p.L237V	ENST00000171111	NM_203500.1	237	Ctg/Gtg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47088006	47088007	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	72	447	0	ENST00000409792.3:c.7068dup	p.Ala2357CysfsTer12	p.A2357Cfs*12	ENST00000409792	NM_014159.6	2356	-/T																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0038856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	59	576	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0038856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	74	465	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690801	89690801	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0038856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	47	242	1	ENST00000371953.3:c.210-2A>T		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																																
MGA	23269	MSKCC	GRCh37	15	42041565	42041566	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	80	470	1	ENST00000219905.7:c.5764dup	p.Ile1922AsnfsTer4	p.I1922Nfs*4	ENST00000219905	NM_001164273.1	1920	-/A																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830775	72830778	+	frameshift_variant	Frame_Shift_Del	DEL	TGCG	TGCG	-			P-0038856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	84	495	0	ENST00000268489.5:c.5803_5806del	p.Arg1935LeufsTer61	p.R1935Lfs*61	ENST00000268489	NM_006885.3	1935	CGCAtt/tt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15975464	15975464	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	76	387	0	ENST00000268712.3:c.3890T>C	p.Met1297Thr	p.M1297T	ENST00000268712	NM_006311.3	1297	aTg/aCg																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110315	3110315	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	89	520	0	ENST00000078429.4:c.305A>T	p.Lys102Met	p.K102M	ENST00000078429	NM_002067.2	102	aAg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55269429	55269429	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	104	703	1	ENST00000275493.2:c.3116G>A	p.Ser1039Asn	p.S1039N	ENST00000275493	NM_005228.3	1039	aGt/aAt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38137058	38137058	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	40	416	1	ENST00000317025.8:c.3760G>A	p.Gly1254Arg	p.G1254R	ENST00000317025	NM_023034.1	1254	Ggg/Agg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	25	267	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1218439	1218439	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0038858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	43	463	0	ENST00000326873.7:c.314T>A	p.Leu105Ter	p.L105*	ENST00000326873	NM_000455.4	105	tTa/tAa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096881	11096881	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	66	691	0	ENST00000344626.4:c.374del	p.Gly125ValfsTer178	p.G125Vfs*178	ENST00000344626	NM_003072.3	124	ctG/ct																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467531	66467532	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0038858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	26	232	1	ENST00000273854.3:c.737_738delinsAA	p.Thr246Lys	p.T246K	ENST00000273854	NM_004439.5	246	aCC/aAA																																																																															
ARID2	196528	MSKCC	GRCh37	12	46125006	46125006	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	51	227	0	ENST00000334344.6:c.193G>T	p.Glu65Ter	p.E65*	ENST00000334344	NM_152641.2	65	Gag/Tag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11217299	11217299	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	127	656	0	ENST00000361445.4:c.4379T>C	p.Leu1460Pro	p.L1460P	ENST00000361445	NM_004958.3	1460	cTt/cCt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46125036	46125036	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	55	231	0	ENST00000334344.6:c.223G>C	p.Glu75Gln	p.E75Q	ENST00000334344	NM_152641.2	75	Gag/Cag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812170	212812170	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	74	269	0	ENST00000342788.4:c.406T>G	p.Leu136Val	p.L136V	ENST00000342788	NM_005235.2	136	Tta/Gta																																																																															
KIT	3815	MSKCC	GRCh37	4	55594078	55594078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	158	335	1	ENST00000288135.5:c.1864G>T	p.Val622Leu	p.V622L	ENST00000288135	NM_000222.2	622	Gta/Tta																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444308	50444308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	133	313	3	ENST00000331340.3:c.238G>A	p.Glu80Lys	p.E80K	ENST00000331340	NM_006060.4	80	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0038904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	73	377	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0038909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	242	405	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RB1	5925	MSKCC	GRCh37	13	49039374	49039374	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	60	623	0	ENST00000267163.4:c.2359C>T	p.Arg787Ter	p.R787*	ENST00000267163	NM_000321.2	787	Cga/Tga																																																																															
MSH2	4436	MSKCC	GRCh37	2	47635601	47635603	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0038909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	127	441	0	ENST00000233146.2:c.279_281del	p.Leu94del	p.L94del	ENST00000233146	NM_000251.2	91	gaTCTt/gat																																																																															
WT1	7490	MSKCC	GRCh37	11	32410700	32410702	+	inframe_deletion	In_Frame_Del	DEL	CCA	CCA	-			P-0038909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	213	413	0	ENST00000332351.3:c.1456_1458del	p.Trp486del	p.W486del	ENST00000332351	NM_024426.4	486	TGG/-																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008278	29008286	+	inframe_deletion	In_Frame_Del	DEL	GTTGCATTT	GTTGCATTT	-			P-0038909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	81	351	2	ENST00000282397.4:c.585_593del	p.Asn196_Thr198del	p.N196_T198del	ENST00000282397	NM_002019.4	195	tcAAATGCAACg/tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579470	7579482	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGGGGAGCAGC	CGGGGGGAGCAGC	-			P-0038909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	589	741	0	ENST00000269305.4:c.205_217del	p.Ala69TrpfsTer50	p.A69Wfs*50	ENST00000269305	NM_001126112.2	69	GCTGCTCCCCCCGtg/tg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18966850	18966850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1231	93	769	0	ENST00000262803.5:c.1661C>T	p.Ser554Phe	p.S554F	ENST00000262803	NM_002911.3	554	tCc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	44	263	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266512	198266512	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	38	211	0	ENST00000335508.6:c.2324G>T	p.Arg775Leu	p.R775L	ENST00000335508	NM_012433.2	775	cGa/cTa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0038945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	17	212	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045533	47045533	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0038945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	62	198	0	ENST00000329236.7:c.2266A>T	p.Lys756Ter	p.K756*	ENST00000329236	NM_001204466.1	756	Aag/Tag																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39322619	39322619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	57	360	0	ENST00000373001.3:c.373G>T	p.Asp125Tyr	p.D125Y	ENST00000373001	NM_022157.3	125	Gac/Tac																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933246	49933246	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	63	482	1	ENST00000296474.3:c.2864A>G	p.Gln955Arg	p.Q955R	ENST00000296474	NM_002447.2	955	cAg/cGg																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1325493	1325493	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0038945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	49	301	0	ENST00000381566.1:c.183-1G>T		p.X61_splice	ENST00000381566		61																																																																																
TP53	7157	MSKCC	GRCh37	17	7578490	7578490	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	124	518	1	ENST00000269305.4:c.440T>A	p.Val147Asp	p.V147D	ENST00000269305	NM_001126112.2	147	gTt/gAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29588835	29588836	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0038950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	43	238	0	ENST00000358273.4:c.4685_4686dup	p.Asn1563LeufsTer12	p.N1563Lfs*12	ENST00000358273	NM_001042492.2	1562	ctt/cTTtt																																																																															
MED12	9968	MSKCC	GRCh37	X	70345986	70345986	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	19	219	0	ENST00000374080.3:c.2523A>C	p.Gln841His	p.Q841H	ENST00000374080		841	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0031102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			349	233	527	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0031102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			245	113	339	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175141	112175141	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			121	25	183	0	ENST00000257430.4:c.3850G>T	p.Glu1284Ter	p.E1284*	ENST00000257430	NM_000038.5	1284	Gaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108201068	108201068	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			206	57	306	0	ENST00000278616.4:c.7435G>T	p.Glu2479Ter	p.E2479*	ENST00000278616	NM_000051.3	2479	Gaa/Taa																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	103	489	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63817057	63817057	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	44	229	0	ENST00000279873.7:c.1028C>G	p.Pro343Arg	p.P343R	ENST00000279873	NM_032199.2	343	cCc/cGc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765123636		P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	40	231	3	ENST00000369902.3:c.71dup	p.Ala25GlyfsTer23	p.A25Gfs*23	ENST00000369902	NM_016169.3	22	gcc/gCcc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	85	328	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	100	481	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	61	361	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	70	316	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
MITF	4286	MSKCC	GRCh37	3	70005681	70005681	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	48	316	0	ENST00000352241.4:c.1013C>T	p.Pro338Leu	p.P338L	ENST00000352241	NM_198159.2	338	cCa/cTa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	61	346	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	158	623	1	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161718	47161718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	48	287	0	ENST00000409792.3:c.4408C>T	p.Pro1470Ser	p.P1470S	ENST00000409792	NM_014159.6	1470	Cca/Tca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916845	178916845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	59	522	0	ENST00000263967.3:c.232G>A	p.Glu78Lys	p.E78K	ENST00000263967	NM_006218.2	78	Gaa/Aaa																																																																															
CASP8	841	MSKCC	GRCh37	2	202150022	202150022	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	133	473	0	ENST00000358485.4:c.1463T>C	p.Leu488Pro	p.L488P	ENST00000358485	NM_001080125.1	488	cTg/cCg																																																																															
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	52	339	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																															
SRC	6714	MSKCC	GRCh37	20	36026147	36026147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	131	659	0	ENST00000358208.4:c.749C>T	p.Thr250Met	p.T250M	ENST00000358208		250	aCg/aTg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265049	46265049	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	155	407	0	ENST00000371998.3:c.1924del	p.Leu642Ter	p.L642*	ENST00000371998		640	tCc/tc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998128	169998128	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs753143066		P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	79	564	5	ENST00000295797.4:c.826del	p.Thr276GlnfsTer7	p.T276Qfs*7	ENST00000295797	NM_002740.5	273	ttA/tt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830807	72830807	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	100	550	0	ENST00000268489.5:c.5774del	p.Gly1925ValfsTer72	p.G1925Vfs*72	ENST00000268489	NM_006885.3	1925	gGt/gt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	229	592	7	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8111056	8111056	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	150	601	0	ENST00000585124.1:c.151G>T	p.Ala51Ser	p.A51S	ENST00000585124	NM_004217.3	51	Gct/Tct																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520704	176520704	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs574060950		P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	124	590	0	ENST00000292408.4:c.1447C>T	p.Arg483Cys	p.R483C	ENST00000292408	NM_213647.1	483	Cgt/Tgt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435162	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	113	594	0	ENST00000407977.2:c.1975_1976delGG	p.Gly659SerfsTer87	p.G659Sfs*87	ENST00000407977		659	GGt/t																																																																															
RIT1	6016	MSKCC	GRCh37	1	155880271	155880271	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	62	353	0	ENST00000368323.3:c.133C>T	p.Arg45Ter	p.R45*	ENST00000368323	NM_006912.5	45	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426730	49426735	+	inframe_deletion	In_Frame_Del	DEL	GCTGCT	GCTGCT	-	rs1227360953		P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	40	288	0	ENST00000301067.7:c.11753_11758del	p.Gln3918_Gln3919del	p.Q3918_Q3919del	ENST00000301067	NM_003482.3	3918	cAGCAGCta/cta																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937249	36937249	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	86	581	0	ENST00000361632.4:c.1072-2A>G		p.X358_splice	ENST00000361632		358																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49433994	49433994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	115	594	1	ENST00000301067.7:c.7559G>A	p.Arg2520Gln	p.R2520Q	ENST00000301067	NM_003482.3	2520	cGg/cAg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678458	88678458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	103	586	0	ENST00000360948.2:c.1078G>A	p.Glu360Lys	p.E360K	ENST00000360948	NM_001012338.2	360	Gag/Aag																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615692	1615692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	297	701	1	ENST00000344749.5:c.1579C>T	p.Arg527Trp	p.R527W	ENST00000344749	NM_001136139.2	527	Cgg/Tgg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45871985	45871985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	104	464	0	ENST00000391945.4:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000391945	NM_000400.3	88	cGa/cAa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803187	1803187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	115	601	2	ENST00000260795.2:c.539G>A	p.Gly180Asp	p.G180D	ENST00000260795		180	gGc/gAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535457	66535457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	104	376	0	ENST00000273854.3:c.4C>T	p.Arg2Trp	p.R2W	ENST00000273854	NM_004439.5	2	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112177620	112177620	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	27	335	0	ENST00000257430.4:c.6329C>A	p.Ser2110Tyr	p.S2110Y	ENST00000257430	NM_000038.5	2110	tCc/tAc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149505058	149505058	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	85	524	0	ENST00000261799.4:c.1757A>G	p.Gln586Arg	p.Q586R	ENST00000261799	NM_002609.3	586	cAg/cGg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138197301	138197301	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	80	253	0	ENST00000237289.4:c.803C>T	p.Pro268Leu	p.P268L	ENST00000237289	NM_001270507.1	268	cCt/cTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151843732	151843732	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	73	355	0	ENST00000262189.6:c.13983G>T	p.Glu4661Asp	p.E4661D	ENST00000262189	NM_170606.2	4661	gaG/gaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	17	354	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0038958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	203	389	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
CDH1	999	MSKCC	GRCh37	16	68772299	68772299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	153	943	0	ENST00000261769.5:c.148C>T	p.Arg50Cys	p.R50C	ENST00000261769	NM_004360.3	50	Cgc/Tgc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175762	176175762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	218	886	0	ENST00000367669.3:c.353C>T	p.Pro118Leu	p.P118L	ENST00000367669	NM_022457.5	118	cCc/cTc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63845553	63845553	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	71	306	0	ENST00000279873.7:c.1292A>G	p.Glu431Gly	p.E431G	ENST00000279873	NM_032199.2	431	gAa/gGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	153	422	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0038963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	414	724	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	104	238	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc																																																																															
APC	324	MSKCC	GRCh37	5	112174494	112174494	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	95	270	0	ENST00000257430.4:c.3203C>G	p.Ser1068Ter	p.S1068*	ENST00000257430	NM_000038.5	1068	tCa/tGa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2107145	2107145	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373818076		P-0038968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	113	910	2	ENST00000219476.3:c.814G>A	p.Ala272Thr	p.A272T	ENST00000219476	NM_000548.3	272	Gcc/Acc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	245912888	245912888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	21	412	1	ENST00000388985.4:c.1264G>A	p.Asp422Asn	p.D422N	ENST00000388985		422	Gac/Aac																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515195	31515195	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	95	801	0	ENST00000344624.3:c.1190C>G	p.Pro397Arg	p.P397R	ENST00000344624		397	cCt/cGt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44919335	44919335	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	49	264	0	ENST00000377967.4:c.1264del	p.Ala422ArgfsTer17	p.A422Rfs*17	ENST00000377967	NM_021140.2	421	gaG/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	326	387	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0038978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	154	533	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	202	535	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245939	46245939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	126	371	0	ENST00000334344.6:c.4033G>A	p.Asp1345Asn	p.D1345N	ENST00000334344	NM_152641.2	1345	Gac/Aac																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023702	31023702	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	242	621	0	ENST00000375687.4:c.3187C>T	p.Gln1063Ter	p.Q1063*	ENST00000375687	NM_015338.5	1063	Cag/Tag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246352	41246352	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780794		P-0038978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	113	546	0	ENST00000357654.3:c.1196A>G	p.His399Arg	p.H399R	ENST00000357654	NM_007294.3	399	cAt/cGt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73340135	73340135	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	99	297	0	ENST00000377767.4:c.1945A>G	p.Ile649Val	p.I649V	ENST00000377767	NM_014953.3	649	Ata/Gta																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288333	33288333	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200104639		P-0038978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	88	505	0	ENST00000374542.5:c.1075C>T	p.Arg359Trp	p.R359W	ENST00000374542	NM_001141970.1	359	Cgg/Tgg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65313292	65313292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	164	561	0	ENST00000342505.4:c.1822G>A	p.Asp608Asn	p.D608N	ENST00000342505	NM_002227.2	608	Gac/Aac																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612890	228612890	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	285	604	0	ENST00000366696.1:c.137C>A	p.Thr46Lys	p.T46K	ENST00000366696	NM_003493.2	46	aCg/aAg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683460	88683460	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	15	28	0	ENST00000372037.3:c.1583A>T	p.Gln528Leu	p.Q528L	ENST00000372037	NM_004329.2	528	cAa/cTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447773	49447773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	168	435	0	ENST00000301067.7:c.661G>A	p.Ala221Thr	p.A221T	ENST00000301067	NM_003482.3	221	Gct/Act																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437507	110437507	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	222	587	0	ENST00000375856.3:c.894C>G	p.Phe298Leu	p.F298L	ENST00000375856	NM_003749.2	298	ttC/ttG																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858094	9858094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	78	539	0	ENST00000330684.3:c.3307C>G	p.Arg1103Gly	p.R1103G	ENST00000330684	NM_001134407.1	1103	Cgc/Ggc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520235	9520235	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	144	426	0	ENST00000353224.5:c.2034C>G	p.Asp678Glu	p.D678E	ENST00000353224	NM_177990.2	678	gaC/gaG																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390074	89390075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	86	256	0	ENST00000336596.2:c.823_824insA	p.Pro275HisfsTer10	p.P275Hfs*10	ENST00000336596	NM_005233.5	275	cca/cAca																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390979	89390980	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	156	480	0	ENST00000336596.2:c.1046dup	p.Asp350GlyfsTer15	p.D350Gfs*15	ENST00000336596	NM_005233.5	349	ctg/cTtg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390981	89390982	+	frameshift_variant	Frame_Shift_Ins	INS	GG	GG	TAT			P-0038978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	156	482	2	ENST00000336596.2:c.1047_1048delinsTAT	p.Asp350IlefsTer15	p.D350Ifs*15	ENST00000336596	NM_005233.5	349	ctGGac/ctTATac																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31508834	31508834	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	197	539	0	ENST00000344624.3:c.1481C>G	p.Ser494Cys	p.S494C	ENST00000344624		494	tCt/tGt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509561	106509561	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	88	581	1	ENST00000359195.3:c.1555C>A	p.Leu519Ile	p.L519I	ENST00000359195	NM_002649.2	519	Ctt/Att																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275872	38275872	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	187	547	0	ENST00000425967.3:c.1397C>A	p.Ala466Glu	p.A466E	ENST00000425967	NM_001174067.1	466	gCa/gAa																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139815592	139815592	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	132	656	0	ENST00000247668.2:c.1063A>C	p.Ile355Leu	p.I355L	ENST00000247668	NM_021138.3	355	Atc/Ctc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039328	47039329	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	T			P-0038978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	250	390	0	ENST00000329236.7:c.720_721delinsT	p.Ala242ProfsTer16	p.A242Pfs*16	ENST00000329236	NM_001204466.1	240	ctGGgg/ctTgg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11024584	11024584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	119	525	0	ENST00000327064.4:c.701G>A	p.Arg234His	p.R234H	ENST00000327064	NM_199141.1	234	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0038981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	160	563	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
TEK	7010	MSKCC	GRCh37	9	27204924	27204924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	116	428	0	ENST00000380036.4:c.2225G>A	p.Gly742Glu	p.G742E	ENST00000380036	NM_000459.3	742	gGa/gAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914995	32914995	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	76	441	0	ENST00000380152.3:c.6503G>T	p.Gly2168Val	p.G2168V	ENST00000380152		2168	gGa/gTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540853	187540853	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	98	319	0	ENST00000441802.2:c.6887C>G	p.Ser2296Cys	p.S2296C	ENST00000441802	NM_005245.3	2296	tCt/tGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936083	178936083	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519927		P-0038983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	123	427	1	ENST00000263967.3:c.1625A>T	p.Glu542Val	p.E542V	ENST00000263967	NM_006218.2	542	gAa/gTa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115956	8115957	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCT			P-0038983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	131	301	0	ENST00000346208.3:c.1305_1308dup	p.Ser437LeufsTer71	p.S437Lfs*71	ENST00000346208		434	-/CCCT																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	120	260	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912660		P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	125	718	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	67	387	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76939457	76939457	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	90	619	0	ENST00000373344.5:c.1291G>T	p.Glu431Ter	p.E431*	ENST00000373344	NM_000489.3	431	Gag/Tag																																																																															
STK19	8859	MSKCC	GRCh37	6	31948302	31948302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	78	619	0	ENST00000375331.2:c.878G>T	p.Arg293Ile	p.R293I	ENST00000375331	NM_004197.1	293	aGa/aTa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11182156	11182156	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	104	651	0	ENST00000361445.4:c.6690A>T	p.Leu2230Phe	p.L2230F	ENST00000361445	NM_004958.3	2230	ttA/ttT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118352428	118352428	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	42	201	0	ENST00000534358.1:c.3635-2A>T		p.X1212_splice	ENST00000534358	NM_005933.3	1212																																																																																
PRKD1	5587	MSKCC	GRCh37	14	30135320	30135320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	102	407	0	ENST00000331968.5:c.498G>T	p.Met166Ile	p.M166I	ENST00000331968	NM_002742.2	166	atG/atT																																																																															
NF1	4763	MSKCC	GRCh37	17	29685544	29685544	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	61	457	0	ENST00000358273.4:c.8017C>T	p.Gln2673Ter	p.Q2673*	ENST00000358273	NM_001042492.2	2673	Caa/Taa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39584409	39584409	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	52	377	0	ENST00000262039.4:c.1074G>T	p.Met358Ile	p.M358I	ENST00000262039	NM_002647.2	358	atG/atT																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615740	1615740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	109	742	2	ENST00000344749.5:c.1531G>A	p.Ala511Thr	p.A511T	ENST00000344749	NM_001136139.2	511	Gct/Act																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033768	48033768	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	58	319	0	ENST00000234420.5:c.3979A>T	p.Asn1327Tyr	p.N1327Y	ENST00000234420	NM_000179.2	1327	Aat/Tat																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99156032	99156032	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	93	598	1	ENST00000074304.5:c.712A>T	p.Thr238Ser	p.T238S	ENST00000074304	NM_001134224.1	238	Act/Tct																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212495264	212495264	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	65	423	0	ENST00000342788.4:c.2002G>T	p.Gly668Cys	p.G668C	ENST00000342788	NM_005235.2	668	Ggt/Tgt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023778	31023778	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	102	598	0	ENST00000375687.4:c.3263A>T	p.Gln1088Leu	p.Q1088L	ENST00000375687	NM_015338.5	1088	cAg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827970	40827970	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	81	447	0	ENST00000373198.4:c.2458G>T	p.Val820Leu	p.V820L	ENST00000373198	NM_133170.3	820	Gtg/Ttg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445085	89445085	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	57	325	0	ENST00000336596.2:c.1405G>C	p.Asp469His	p.D469H	ENST00000336596	NM_005233.5	469	Gac/Cac																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670340	134670340	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	78	406	0	ENST00000398015.3:c.251G>T	p.Arg84Leu	p.R84L	ENST00000398015	NM_004441.4	84	cGc/cTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030346	180030346	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	125	703	0	ENST00000261937.6:c.3938C>G	p.Pro1313Arg	p.P1313R	ENST00000261937	NM_182925.4	1313	cCt/cGt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117686791	117686791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	43	431	0	ENST00000368508.3:c.2926G>T	p.Asp976Tyr	p.D976Y	ENST00000368508	NM_002944.2	976	Gac/Tac																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739969	41739969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	67	389	0	ENST00000242208.4:c.4C>A	p.Pro2Thr	p.P2T	ENST00000242208	NM_002192.2	2	Ccc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	154	436	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0038985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	189	323	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0038985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	217	635	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	49	243	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	70	230	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
CIC	23152	MSKCC	GRCh37	19	42790944	42790944	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367972487		P-0038985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	255	670	1	ENST00000575354.2:c.89G>A	p.Arg30His	p.R30H	ENST00000575354	NM_015125.3	30	cGc/cAc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323991	31323991	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1050692		P-0038985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	18	434	2	ENST00000412585.2:c.572G>C	p.Trp191Ser	p.W191S	ENST00000412585	NM_005514.6	191	tGg/tCg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324049	31324049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	18	543	0	ENST00000412585.2:c.514G>A	p.Glu172Lys	p.E172K	ENST00000412585	NM_005514.6	172	Gag/Aag																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729841	41729841	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	95	417	0	ENST00000242208.4:c.688T>A	p.Leu230Met	p.L230M	ENST00000242208	NM_002192.2	230	Ttg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0038990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	406	722	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112162803	112162803	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0038990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	156	285	1	ENST00000257430.4:c.1409-2A>G		p.X470_splice	ENST00000257430	NM_000038.5	470																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	88	523	1	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478916	56478916	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	375	783	0	ENST00000267101.3:c.372C>A	p.Asn124Lys	p.N124K	ENST00000267101	NM_001982.3	124	aaC/aaA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593388	48593388	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0038990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	123	275	0	ENST00000342988.3:c.1140-1G>T		p.X380_splice	ENST00000342988	NM_005359.5	380																																																																																
DNMT3A	1788	MSKCC	GRCh37	2	25467161	25467161	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	80	574	1	ENST00000264709.3:c.1714G>T	p.Ala572Ser	p.A572S	ENST00000264709	NM_175629.2	572	Gcc/Tcc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	66	329	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	321	754	1	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81528563	81528563	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0038991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	82	221	0	ENST00000298171.2:c.242T>C	p.Ile81Thr	p.I81T	ENST00000298171	NM_000369.2	81	aTc/aCc																																																																															
NF1	4763	MSKCC	GRCh37	17	29553475	29553475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	294	585	0	ENST00000358273.4:c.2024G>T	p.Gly675Val	p.G675V	ENST00000358273	NM_001042492.2	675	gGa/gTa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264332	46264332	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	72	393	0	ENST00000371998.3:c.1379G>C	p.Gly460Ala	p.G460A	ENST00000371998		460	gGg/gCg																																																																															
HRAS	3265	MSKCC	GRCh37	11	533812	533812	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	91	758	0	ENST00000311189.7:c.244T>G	p.Phe82Val	p.F82V	ENST00000311189		82	Ttt/Gtt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061140	38061146	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCTT	CCCGCTT	-			P-0039071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	32	326	0	ENST00000250448.2:c.843_849del	p.Ser282AlafsTer37	p.S282Afs*37	ENST00000250448	NM_004496.3	281	ggAAGCGGG/gg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296400	15296400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	72	960	2	ENST00000263388.2:c.2042G>A	p.Cys681Tyr	p.C681Y	ENST00000263388	NM_000435.2	681	tGc/tAc																																																																															
ALK	238	MSKCC	GRCh37	2	29754809	29754830	+	frameshift_variant	Frame_Shift_Del	DEL	GGATCTCTCTTGCAGCCTCGTT	GGATCTCTCTTGCAGCCTCGTT	-			P-0039071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	27	441	0	ENST00000389048.3:c.1105_1126del	p.Asn369SerfsTer2	p.N369Sfs*2	ENST00000389048	NM_004304.4	369	AACGAGGCTGCAAGAGAGATCCtc/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	25	403	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	33	623	0	ENST00000269305.4:c.731G>T	p.Gly244Val	p.G244V	ENST00000269305	NM_001126112.2	244	gGc/gTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220706	1220706	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	55	746	0	ENST00000326873.7:c.727del	p.Val243SerfsTer44	p.V243Sfs*44	ENST00000326873	NM_000455.4	242	Ggg/gg																																																																															
ATM	472	MSKCC	GRCh37	11	108196270	108196270	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0039077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	21	256	0	ENST00000278616.4:c.6806A>T	p.Gln2269Leu	p.Q2269L	ENST00000278616	NM_000051.3	2269	cAg/cTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145653	11145653	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	60	829	2	ENST00000344626.4:c.4015G>T	p.Glu1339Ter	p.E1339*	ENST00000344626	NM_003072.3	1339	Gag/Tag																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576377	67576377	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	15	159	0	ENST00000274335.5:c.656A>G	p.Tyr219Cys	p.Y219C	ENST00000274335		219	tAt/tGt																																																																															
SMO	6608	MSKCC	GRCh37	7	128852201	128852201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	52	869	0	ENST00000249373.3:c.2273G>T	p.Trp758Leu	p.W758L	ENST00000249373	NM_005631.4	758	tGg/tTg																																																																															
SUFU	51684	MSKCC	GRCh37	10	104356969	104356969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	84	734	0	ENST00000369902.3:c.829G>A	p.Asp277Asn	p.D277N	ENST00000369902	NM_016169.3	277	Gac/Aac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912453	32912453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	61	416	0	ENST00000380152.3:c.3961G>A	p.Asp1321Asn	p.D1321N	ENST00000380152		1321	Gat/Aat																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30133048	30133048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	71	501	1	ENST00000331968.5:c.553C>T	p.His185Tyr	p.H185Y	ENST00000331968	NM_002742.2	185	Cat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7574002	7574002	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	243	932	0	ENST00000269305.4:c.1025G>C	p.Arg342Pro	p.R342P	ENST00000269305	NM_001126112.2	342	cGa/cCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	197	306	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0038790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	489	589	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045024	47045024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	180	293	0	ENST00000329236.7:c.2116C>T	p.His706Tyr	p.H706Y	ENST00000329236	NM_001204466.1	706	Cac/Tac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27098999	27098999	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	139	409	0	ENST00000324856.7:c.3415G>T	p.Gly1139Ter	p.G1139*	ENST00000324856	NM_006015.4	1139	Gga/Tga																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246387	46246387	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	198	280	0	ENST00000334344.6:c.4483del	p.His1495IlefsTer21	p.H1495Ifs*21	ENST00000334344	NM_152641.2	1494	tCc/tc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610560	81610560	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	218	313	0	ENST00000298171.2:c.2158C>A	p.Gln720Lys	p.Q720K	ENST00000298171	NM_000369.2	720	Cag/Aag																																																																															
ERG	2078	MSKCC	GRCh37	21	39817493	39817493	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	144	457	0	ENST00000288319.7:c.70G>T	p.Gly24Ter	p.G24*	ENST00000288319	NM_182918.3	24	Gga/Tga																																																																															
ATR	545	MSKCC	GRCh37	3	142177816	142177816	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	155	227	0	ENST00000350721.4:c.7487A>G	p.Asn2496Ser	p.N2496S	ENST00000350721	NM_001184.3	2496	aAt/aGt																																																																															
PMS2	5395	MSKCC	GRCh37	7	6036983	6036983	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0038790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	279	416	0	ENST00000265849.7:c.777T>A	p.Cys259Ter	p.C259*	ENST00000265849	NM_000535.5	259	tgT/tgA																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508617	106508617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	236	373	0	ENST00000359195.3:c.611C>G	p.Ser204Cys	p.S204C	ENST00000359195	NM_002649.2	204	tCc/tGc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340351	8340351	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	248	361	0	ENST00000356435.5:c.5245A>C	p.Met1749Leu	p.M1749L	ENST00000356435		1749	Atg/Ctg																																																																															
ABL1	25	MSKCC	GRCh37	9	133738186	133738186	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	252	364	0	ENST00000318560.5:c.586G>T	p.Ala196Ser	p.A196S	ENST00000318560	NM_005157.4	196	Gcc/Tcc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18943113	18943113	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	102	310	2	ENST00000262803.5:c.95A>T	p.Glu32Val	p.E32V	ENST00000262803	NM_002911.3	32	gAg/gTg																																																																															
KIT	3815	MSKCC	GRCh37	4	55593611	55593667	+	inframe_deletion	In_Frame_Del	DEL	TGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGACCCAACACAACTTCCTTA	TGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGACCCAACACAACTTCCTTA	-			P-0038792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	176	397	1	ENST00000288135.5:c.1679_1735del	p.Val560_Tyr578del	p.V560_Y578del	ENST00000288135	NM_000222.2	559	gtTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGACCCAACACAACTTCCTTAt/gtt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	91	327	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971035	21971035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	72	445	0	ENST00000304494.5:c.323A>G	p.Asp108Gly	p.D108G	ENST00000304494	NM_000077.4	108	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577504	7577524	+	inframe_deletion	In_Frame_Del	DEL	GTCTTCCAGTGTGATGATGGT	GTCTTCCAGTGTGATGATGGT	-			P-0038795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	114	561	0	ENST00000269305.4:c.757_777del	p.Thr253_Asp259del	p.T253_D259del	ENST00000269305	NM_001126112.2	253	ACCATCATCACACTGGAAGAC/-																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435739	56435740	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0038795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	90	464	0	ENST00000407977.2:c.1397_1398del	p.Ser466Ter	p.S466*	ENST00000407977		466	tCC/t																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0038796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	91	425	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
CBFB	865	MSKCC	GRCh37	16	67063248	67063336	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	CAGCCAGCGGGTGCCCGCGCAAGCCCCGAGCGCGGCCGGCCGGCGCGGCCTCAGGGCGGGAAGATGCCGCGCGTCGTGCCCGACCAGAG	CAGCCAGCGGGTGCCCGCGCAAGCCCCGAGCGCGGCCGGCCGGCGCGGCCTCAGGGCGGGAAGATGCCGCGCGTCGTGCCCGACCAGAG	-			P-0038796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	60	5	0	ENST00000412916.2:c.-63_26del		p.*21*	ENST00000412916																																																																																		
MITF	4286	MSKCC	GRCh37	3	70014035	70014035	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	77	323	0	ENST00000352241.4:c.1199T>G	p.Leu400Arg	p.L400R	ENST00000352241	NM_198159.2	400	cTt/cGt																																																																															
AR	367	MSKCC	GRCh37	X	66765146	66765158	+	frameshift_variant	Frame_Shift_Del	DEL	GTTTGCTGCTGCT	GTTTGCTGCTGCT	-			P-0038796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	33	331	0	ENST00000374690.3:c.159_171del	p.Leu54SerfsTer117	p.L54Sfs*117	ENST00000374690	NM_000044.3	53	aGTTTGCTGCTGCTg/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0038802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	21	329	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0038802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	17	511	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653820	89653821	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	25	307	0	ENST00000371953.3:c.121dup	p.Arg41LysfsTer3	p.R41Kfs*3	ENST00000371953	NM_000314.4	40	gaa/gAaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711993	89711999	+	frameshift_variant	Frame_Shift_Del	DEL	CAATGTT	CAATGTT	-			P-0038806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	25	241	0	ENST00000371953.3:c.613_619del	p.Met205ValfsTer14	p.M205Vfs*14	ENST00000371953	NM_000314.4	204	cCAATGTTc/cc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591134	67591135	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAATCCAGCTGA			P-0038806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	26	264	0	ENST00000274335.5:c.1727_1728insCAATCCAGCTGA	p.Thr576_Arg577insAsnProAlaGlu	p.T576_R577insNPAE	ENST00000274335		576	acg/acCAATCCAGCTGAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782144		P-0038808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	166	70	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624242	89624272	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGAGATCGTTAGCAGAAACAAAAGGAGAT	AAAGAGATCGTTAGCAGAAACAAAAGGAGAT	-			P-0038808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	23	21	0	ENST00000371953.3:c.17_47del	p.Lys6IlefsTer8	p.K6Ifs*8	ENST00000371953	NM_000314.4	6	AAAGAGATCGTTAGCAGAAACAAAAGGAGATat/at																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980744	40980744	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199751250		P-0038808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	82	49	0	ENST00000373198.4:c.1742G>A	p.Arg581Gln	p.R581Q	ENST00000373198	NM_133170.3	581	cGg/cAg																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2491355	2491355	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	97	853	0	ENST00000355716.4:c.398A>G	p.Asp133Gly	p.D133G	ENST00000355716	NM_003820.2	133	gAc/gGc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11199670	11199670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	111	558	1	ENST00000361445.4:c.4918C>T	p.Arg1640Trp	p.R1640W	ENST00000361445	NM_004958.3	1640	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254717	16254717	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	84	624	0	ENST00000375759.3:c.1982G>T	p.Trp661Leu	p.W661L	ENST00000375759	NM_015001.2	661	tGg/tTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	24	84	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087372	27087373	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	86	550	0	ENST00000324856.7:c.1950dup	p.Met651HisfsTer25	p.M651Hfs*25	ENST00000324856	NM_006015.4	649	ctc/ctCc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100862	27100862	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	89	527	0	ENST00000324856.7:c.4144A>G	p.Lys1382Glu	p.K1382E	ENST00000324856	NM_006015.4	1382	Aag/Gag																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46715736	46715736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	138	586	1	ENST00000371975.4:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000371975	NM_003579.3	52	cGg/cAg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	54	379	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65321194	65321194	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	51	331	0	ENST00000342505.4:c.1646G>A	p.Arg549Gln	p.R549Q	ENST00000342505	NM_002227.2	549	cGa/cAa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	32	359	1	ENST00000342505.4:c.1016delA	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																															
NRAS	4893	MSKCC	GRCh37	1	115251216	115251216	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	68	500	0	ENST00000369535.4:c.510del	p.Lys170AsnfsTer19	p.K170Nfs*19	ENST00000369535	NM_002524.4	170	aaA/aa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120491682	120491683	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	55	339	0	ENST00000256646.2:c.2546_2547del	p.Lys849ArgfsTer6	p.K849Rfs*6	ENST00000256646	NM_024408.3	849	aAA/a																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551757	150551757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	46	157	0	ENST00000369026.2:c.250G>A	p.Ala84Thr	p.A84T	ENST00000369026	NM_021960.4	84	Gcc/Acc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206648211	206648211	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202128741		P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	47	383	0	ENST00000367120.3:c.232G>A	p.Gly78Arg	p.G78R	ENST00000367120	NM_014002.3	78	Gga/Aga																																																																															
TET1	80312	MSKCC	GRCh37	10	70333597	70333597	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	61	471	0	ENST00000373644.4:c.1502A>G	p.Lys501Arg	p.K501R	ENST00000373644	NM_030625.2	501	aAg/aGg																																																																															
TET1	80312	MSKCC	GRCh37	10	70446447	70446447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	85	436	0	ENST00000373644.4:c.5387C>T	p.Ser1796Leu	p.S1796L	ENST00000373644	NM_030625.2	1796	tCg/tTg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88672029	88672029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	107	421	1	ENST00000372037.3:c.563G>A	p.Arg188His	p.R188H	ENST00000372037	NM_004329.2	188	cGt/cAt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741343	17741343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	75	656	2	ENST00000250003.3:c.14C>T	p.Ser5Leu	p.S5L	ENST00000250003	NM_002478.4	5	tCg/tTg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741526	17741526	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	67	513	1	ENST00000250003.3:c.197C>A	p.Pro66His	p.P66H	ENST00000250003	NM_002478.4	66	cCc/cAc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138840	64138840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	117	643	1	ENST00000334205.4:c.2207G>A	p.Arg736Gln	p.R736Q	ENST00000334205	NM_003942.2	736	cGg/cAg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577330	64577333	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	105	749	0	ENST00000337652.1:c.249_252delGTCT	p.Ile85SerfsTer33	p.I85Sfs*33	ENST00000337652	NM_130803.2	83	ctGTCT/ct																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67201947	67201947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	168	669	1	ENST00000312629.5:c.1147G>A	p.Ala383Thr	p.A383T	ENST00000312629	NM_003952.2	383	Gcc/Acc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94201032	94201032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	27	346	0	ENST00000323929.3:c.1045C>T	p.Arg349Trp	p.R349W	ENST00000323929	NM_005591.3	349	Cgg/Tgg																																																																															
SESN3	143686	MSKCC	GRCh37	11	94963966	94963966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	56	297	0	ENST00000536441.1:c.59G>A	p.Cys20Tyr	p.C20Y	ENST00000536441	NM_144665.3	20	tGc/tAc																																																																															
PGR	5241	MSKCC	GRCh37	11	100920786	100920786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	30	308	2	ENST00000325455.5:c.2362C>T	p.Arg788Trp	p.R788W	ENST00000325455	NM_001202474.3	788	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108142096	108142096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	55	513	0	ENST00000278616.4:c.3040G>A	p.Ala1014Thr	p.A1014T	ENST00000278616	NM_000051.3	1014	Gct/Act																																																																															
ATM	472	MSKCC	GRCh37	11	108168020	108168020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	45	286	0	ENST00000278616.4:c.4916C>T	p.Pro1639Leu	p.P1639L	ENST00000278616	NM_000051.3	1639	cCg/cTg																																																																															
ATM	472	MSKCC	GRCh37	11	108173696	108173696	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	28	410	0	ENST00000278616.4:c.5441del	p.Leu1814TrpfsTer14	p.L1814Wfs*14	ENST00000278616	NM_000051.3	1812	gcT/gc																																																																															
CCND2	894	MSKCC	GRCh37	12	4409089	4409089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	59	412	0	ENST00000261254.3:c.784C>A	p.Arg262Ser	p.R262S	ENST00000261254	NM_001759.3	262	Cgt/Agt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894365		P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	95	372	0	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426990	49426990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	83	639	0	ENST00000301067.7:c.11498G>A	p.Arg3833Gln	p.R3833Q	ENST00000301067	NM_003482.3	3833	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	93	837	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446488	49446488	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	85	440	0	ENST00000301067.7:c.1117del	p.Ser373HisfsTer29	p.S373Hfs*29	ENST00000301067	NM_003482.3	373	Tca/ca																																																																															
CDK8	1024	MSKCC	GRCh37	13	26967543	26967543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	61	348	0	ENST00000381527.3:c.686C>T	p.Thr229Met	p.T229M	ENST00000381527	NM_001260.1	229	aCg/aTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877353	28877353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	154	453	0	ENST00000282397.4:c.3968C>T	p.Pro1323Leu	p.P1323L	ENST00000282397	NM_002019.4	1323	cCg/cTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435300	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-	rs765493638		P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	53	163	6	ENST00000375856.3:c.3099_3101del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1033	ccACCg/ccg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987138	36987138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	73	690	1	ENST00000354822.5:c.551C>T	p.Ala184Val	p.A184V	ENST00000354822	NM_001079668.2	184	gCc/gTc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81534643	81534645	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	27	367	0	ENST00000298171.2:c.290_292del	p.Phe97del	p.F97del	ENST00000298171	NM_000369.2	96	tcCTTc/tcc																																																																															
MGA	23269	MSKCC	GRCh37	15	42000020	42000020	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	77	640	1	ENST00000219905.7:c.2287del	p.Trp763GlyfsTer54	p.W763Gfs*54	ENST00000219905	NM_001164273.1	761	ccT/cc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88690584	88690584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	53	454	0	ENST00000360948.2:c.446C>T	p.Thr149Met	p.T149M	ENST00000360948	NM_001012338.2	149	aCg/aTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2130288	2130288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	100	748	0	ENST00000219476.3:c.3520C>T	p.Arg1174Trp	p.R1174W	ENST00000219476	NM_000548.3	1174	Cgg/Tgg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2220703	2220703	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	70	448	0	ENST00000326181.6:c.320T>G	p.Phe107Cys	p.F107C	ENST00000326181	NM_032271.2	107	tTc/tGc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857680	9857680	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1303700994		P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	98	449	1	ENST00000330684.3:c.3721C>T	p.Arg1241Trp	p.R1241W	ENST00000330684	NM_001134407.1	1241	Cgg/Tgg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646308	23646308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	72	586	1	ENST00000261584.4:c.1559G>A	p.Cys520Tyr	p.C520Y	ENST00000261584	NM_024675.3	520	tGc/tAc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50810143	50810143	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	53	535	0	ENST00000398568.2:c.967G>C	p.Val323Leu	p.V323L	ENST00000398568	NM_001042412.1	323	Gtt/Ctt																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813627	50813627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	126	632	0	ENST00000398568.2:c.1181G>A	p.Arg394His	p.R394H	ENST00000398568	NM_001042412.1	394	cGt/cAt																																																																															
NUP93	9688	MSKCC	GRCh37	16	56872937	56872937	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	53	327	0	ENST00000308159.5:c.2097delT	p.Phe699LeufsTer19	p.F699Lfs*19	ENST00000308159	NM_014669.4	698	Ttt/tt																																																																															
CDH1	999	MSKCC	GRCh37	16	68863643	68863643	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	90	655	0	ENST00000261769.5:c.2386del	p.Arg796GlyfsTer20	p.R796Gfs*20	ENST00000261769	NM_004360.3	794	gtC/gt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829463	72829471	+	inframe_deletion	In_Frame_Del	DEL	TCCATGGCA	TCCATGGCA	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	64	567	0	ENST00000268489.5:c.7110_7118del	p.Asp2370_Met2372del	p.D2370_M2372del	ENST00000268489	NM_006885.3	2370	gaTGCCATGGAa/gaa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845896	72845896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	39	462	0	ENST00000268489.5:c.3571G>A	p.Ala1191Thr	p.A1191T	ENST00000268489	NM_006885.3	1191	Gca/Aca																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348658	89348658	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	174	827	0	ENST00000301030.4:c.4292del	p.Asn1431MetfsTer11	p.N1431Mfs*11	ENST00000301030	NM_001256183.1	1431	aAt/at																																																																															
NF1	4763	MSKCC	GRCh37	17	29562668	29562668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	55	495	1	ENST00000358273.4:c.3748C>T	p.Arg1250Trp	p.R1250W	ENST00000358273	NM_001042492.2	1250	Cgg/Tgg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264325	30264326	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	18	70	0	ENST00000322652.5:c.65dup	p.Gly23ArgfsTer60	p.G23Rfs*60	ENST00000322652	NM_015355.2	20	-/G																																																																															
RARA	5914	MSKCC	GRCh37	17	38487554	38487554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	111	676	0	ENST00000254066.5:c.89delC	p.Pro30LeufsTer12	p.P30Lfs*12	ENST00000254066	NM_000964.3	28	ttC/tt																																																																															
RARA	5914	MSKCC	GRCh37	17	38512270	38512270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	169	756	0	ENST00000254066.5:c.1181G>A	p.Arg394Gln	p.R394Q	ENST00000254066	NM_000964.3	394	cGg/cAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	139	738	3	ENST00000407977.2:c.349delC	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492694	56492694	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	118	456	0	ENST00000407977.2:c.245del	p.Leu82Ter	p.L82*	ENST00000407977		82	tTa/ta																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533938	63533939	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	54	452	0	ENST00000307078.5:c.1214_1215dup	p.Gly406ArgfsTer53	p.G406Rfs*53	ENST00000307078	NM_004655.3	405	-/AG																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63537586	63537587	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	126	484	0	ENST00000307078.5:c.1045_1046del	p.Leu349ThrfsTer24	p.L349Tfs*24	ENST00000307078	NM_004655.3	349	CTa/a																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63553975	63553976	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	107	532	0	ENST00000307078.5:c.763_764del	p.Leu255GlufsTer13	p.L255Efs*13	ENST00000307078	NM_004655.3	255	CTg/g																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66518957	66518957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	64	455	0	ENST00000358598.2:c.238G>A	p.Asp80Asn	p.D80N	ENST00000358598	NM_212471.2	80	Gat/Aat																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2191069	2191069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	89	593	0	ENST00000398665.3:c.323G>A	p.Arg108His	p.R108H	ENST00000398665	NM_032482.2	108	cGc/cAc																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110242	3110242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	114	778	0	ENST00000078429.4:c.232C>T	p.Leu78Phe	p.L78F	ENST00000078429	NM_002067.2	78	Ctc/Ttc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210500	5210500	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	60	610	0	ENST00000357368.4:c.5467T>C	p.Phe1823Leu	p.F1823L	ENST00000357368	NM_002850.3	1823	Ttc/Ctc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	147	626	2	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291083	10291084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755889652		P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	81	752	1	ENST00000340748.4:c.387dup	p.Lys130GlnfsTer19	p.K130Qfs*19	ENST00000340748		129	-/C																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610610	10610610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	84	712	1	ENST00000171111.5:c.100G>A	p.Ala34Thr	p.A34T	ENST00000171111	NM_203500.1	34	Gcc/Acc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144149	11144149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	98	674	0	ENST00000344626.4:c.3730C>T	p.Arg1244Cys	p.R1244C	ENST00000344626	NM_003072.3	1244	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210689	36210689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	89	594	0	ENST00000222270.7:c.440G>A	p.Arg147Gln	p.R147Q	ENST00000222270	NM_014727.1	147	cGa/cAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	136	903	2	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918231	50918231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	96	661	0	ENST00000440232.2:c.2548C>T	p.Arg850Cys	p.R850C	ENST00000440232	NM_002691.3	850	Cgc/Tgc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	97	448	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99170773	99170773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	65	458	0	ENST00000074304.5:c.1402G>A	p.Ala468Thr	p.A468T	ENST00000074304	NM_001134224.1	468	Gcc/Acc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046441	128046441	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	73	355	0	ENST00000285398.2:c.823-1G>A		p.X275_splice	ENST00000285398	NM_000122.1	275																																																																																
BARD1	580	MSKCC	GRCh37	2	215645975	215645975	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	50	475	0	ENST00000260947.4:c.623delA	p.Lys208ArgfsTer4	p.K208Rfs*4	ENST00000260947	NM_000465.2	208	aAg/ag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023445	31023445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	61	588	0	ENST00000375687.4:c.2930A>C	p.Gln977Pro	p.Q977P	ENST00000375687	NM_015338.5	977	cAg/cCg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730910	40730910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	115	578	1	ENST00000373198.4:c.3625C>T	p.Arg1209Trp	p.R1209W	ENST00000373198	NM_133170.3	1209	Cgg/Tgg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12647737	12647737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	49	355	2	ENST00000251849.4:c.643C>T	p.Arg215Cys	p.R215C	ENST00000251849	NM_002880.3	215	Cgt/Tgt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468398	89468398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	36	254	0	ENST00000336596.2:c.1938delA	p.Glu647ArgfsTer9	p.E647Rfs*9	ENST00000336596	NM_005233.5	644	tcA/tc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204842	128204842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1169	82	908	2	ENST00000341105.2:c.599del	p.Gly200ValfsTer18	p.G200Vfs*18	ENST00000341105	NM_032638.4	200	gGt/gt																																																																															
ATR	545	MSKCC	GRCh37	3	142172007	142172007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	55	541	0	ENST00000350721.4:c.7724C>T	p.Ala2575Val	p.A2575V	ENST00000350721	NM_001184.3	2575	gCg/gTg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998128	169998128	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs753143066		P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	86	666	5	ENST00000295797.4:c.826del	p.Thr276GlnfsTer7	p.T276Qfs*7	ENST00000295797	NM_002740.5	273	ttA/tt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803450	1803450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	146	696	0	ENST00000260795.2:c.719C>T	p.Thr240Met	p.T240M	ENST00000260795		240	aCg/aTg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1920288	1920288	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	108	683	1	ENST00000382891.5:c.1348C>T	p.Arg450Ter	p.R450*	ENST00000382891	NM_133335.3	450	Cga/Tga																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1976593	1976593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	85	642	0	ENST00000382891.5:c.3376C>T	p.Arg1126Cys	p.R1126C	ENST00000382891	NM_133335.3	1126	Cgt/Tgt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201815	66201815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	92	425	0	ENST00000273854.3:c.2687G>A	p.Arg896His	p.R896H	ENST00000273854	NM_004439.5	896	cGt/cAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286238	66286238	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	35	339	0	ENST00000273854.3:c.1448del	p.Asn483ThrfsTer18	p.N483Tfs*18	ENST00000273854	NM_004439.5	483	aAc/ac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250856	153250858	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	49	343	0	ENST00000281708.4:c.1202_1204delACA	p.Asn401del	p.N401del	ENST00000281708	NM_033632.3	401	aACAct/act																																																																															
TERT	7015	MSKCC	GRCh37	5	1268636	1268636	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	94	684	0	ENST00000310581.5:c.2581G>A	p.Gly861Arg	p.G861R	ENST00000310581	NM_198253.2	861	Ggg/Agg																																																																															
TERT	7015	MSKCC	GRCh37	5	1279527	1279527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	202	880	0	ENST00000310581.5:c.2009C>T	p.Ala670Val	p.A670V	ENST00000310581	NM_198253.2	670	gCg/gTg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38963112	38963112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	38	255	0	ENST00000357387.3:c.1432C>T	p.Arg478Cys	p.R478C	ENST00000357387	NM_152756.3	478	Cgc/Tgc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161690	56161690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	44	395	0	ENST00000399503.3:c.1187G>A	p.Arg396His	p.R396H	ENST00000399503	NM_005921.1	396	cGt/cAt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753011	57753012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	64	347	7	ENST00000274289.3:c.1004dupT	p.Leu335PhefsTer12	p.L335Ffs*12	ENST00000274289	NM_006622.3	335	ttg/ttTg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753950	57753950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	34	369	0	ENST00000274289.3:c.674G>A	p.Gly225Asp	p.G225D	ENST00000274289	NM_006622.3	225	gGt/gAt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	165	600	8	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564366	86564366	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	67	535	0	ENST00000274376.6:c.98T>C	p.Val33Ala	p.V33A	ENST00000274376	NM_002890.2	33	gTg/gCg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931451	131931452	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	46	433	0	ENST00000265335.6:c.2164_2165dup	p.Glu723ArgfsTer14	p.E723Rfs*14	ENST00000265335		719	cta/ctAAa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562442	176562442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	77	736	0	ENST00000439151.2:c.338G>A	p.Cys113Tyr	p.C113Y	ENST00000439151	NM_022455.4	113	tGc/tAc																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020979	26020979	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	61	442	0	ENST00000357647.3:c.262T>C	p.Ser88Pro	p.S88P	ENST00000357647	NM_003529.2	88	Tcc/Ccc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672177	30672177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	114	776	0	ENST00000376406.3:c.4783C>T	p.Arg1595Trp	p.R1595W	ENST00000376406	NM_014641.2	1595	Cgg/Tgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178537	32178537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	48	547	0	ENST00000375023.3:c.2857C>A	p.Leu953Ile	p.L953I	ENST00000375023	NM_004557.3	953	Ctc/Atc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288240	33288240	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	63	504	0	ENST00000374542.5:c.1168G>A	p.Glu390Lys	p.E390K	ENST00000374542	NM_001141970.1	390	Gag/Aag																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202351	138202351	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	84	586	1	ENST00000237289.4:c.2274del	p.Lys759SerfsTer57	p.K759Sfs*57	ENST00000237289	NM_001270507.1	756	gaC/ga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157488275	157488275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	62	395	3	ENST00000346085.5:c.2981C>T	p.Ala994Val	p.A994V	ENST00000346085	NM_020732.3	994	gCg/gTg																																																																															
PARK2	5071	MSKCC	GRCh37	6	161771166	161771166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	84	691	0	ENST00000366898.1:c.1363C>T	p.Arg455Cys	p.R455C	ENST00000366898	NM_004562.2	455	Cgc/Tgc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864403	162864403	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148990138		P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	87	461	1	ENST00000366898.1:c.110C>T	p.Pro37Leu	p.P37L	ENST00000366898	NM_004562.2	37	cCg/cTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2958168	2958168	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs928782717		P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	78	767	1	ENST00000396946.4:c.2564G>A	p.Arg855Gln	p.R855Q	ENST00000396946	NM_032415.4	855	cGg/cAg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508673	106508673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	158	540	0	ENST00000359195.3:c.667G>A	p.Val223Ile	p.V223I	ENST00000359195	NM_002649.2	223	Gtc/Atc																																																																															
MET	4233	MSKCC	GRCh37	7	116411880	116411883	+	intron_variant	Intron	DEL	TCTT	TCTT	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1160	141	914	0	ENST00000397752.3:c.2888-16_2888-13delTTCT		p.*963*	ENST00000397752	NM_000245.2																																																																																	
KMT2C	58508	MSKCC	GRCh37	7	151843748	151843748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	58	399	1	ENST00000262189.6:c.13967C>T	p.Ala4656Val	p.A4656V	ENST00000262189	NM_170606.2	4656	gCg/gTg																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	66	326	1	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5022033	5022033	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	54	431	0	ENST00000381652.3:c.46A>G	p.Thr16Ala	p.T16A	ENST00000381652	NM_004972.3	16	Acc/Gcc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	130	614	3	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231105	98231105	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	114	568	0	ENST00000331920.6:c.2178delC	p.Cys727ValfsTer19	p.C727Vfs*19	ENST00000331920	NM_000264.3	726	ccC/cc																																																																															
ABL1	25	MSKCC	GRCh37	9	133760231	133760232	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	83	582	0	ENST00000318560.5:c.2559dup	p.Thr854HisfsTer30	p.T854Hfs*30	ENST00000318560	NM_005157.4	852	acc/aCcc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300040	137300040	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	83	769	3	ENST00000481739.1:c.331del	p.Leu111TrpfsTer57	p.L111Wfs*57	ENST00000481739	NM_002957.4	109	Ccc/cc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197044	123197044	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	37	206	0	ENST00000218089.9:c.1810C>T	p.Arg604Ter	p.R604*	ENST00000218089	NM_001042749.1	604	Cga/Tga																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803386	1803386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	90	768	0	ENST00000260795.2:c.655G>A	p.Val219Met	p.V219M	ENST00000260795		219	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577571	7577571	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037734-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			316	201	646	0	ENST00000269305.4:c.710T>A	p.Met237Lys	p.M237K	ENST00000269305	NM_001126112.2	237	aTg/aAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604765	48604766	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0037734-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			258	58	412	1	ENST00000342988.3:c.1589_1590del	p.His530ProfsTer46	p.H530Pfs*46	ENST00000342988	NM_005359.5	529	ttACac/ttac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TG			P-0037734-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			488	163	480	0	ENST00000256078.4:c.180_181delinsCA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggCAaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356230	66356230	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037734-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			326	154	559	2	ENST00000273854.3:c.1267A>C	p.Asn423His	p.N423H	ENST00000273854	NM_004439.5	423	Aac/Cac																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562256	176562256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037734-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			554	212	675	0	ENST00000439151.2:c.152C>T	p.Ser51Leu	p.S51L	ENST00000439151	NM_022455.4	51	tCg/tTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76952094	76952104	+	frameshift_variant	Frame_Shift_Del	DEL	TTTTCTGAATT	TTTTCTGAATT	-			P-0037866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	13	98	0	ENST00000373344.5:c.331_341del	p.Asn111Ter	p.N111*	ENST00000373344	NM_000489.3	111	AATTCAGAAAAt/t																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	55	431	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0038557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	31	264	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0038557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	53	604	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971099	+	missense_variant	Missense_Mutation	ONP	CCCG	CCCG	TCCA			P-0038557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	27	458	0	ENST00000304494.5:c.259_262delinsTGGA	p.Arg87_Glu88delinsTrpLys	p.R87_E88delinsWK	ENST00000304494	NM_000077.4	87	CGGGag/TGGAag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720833	89720836	+	frameshift_variant	Frame_Shift_Del	DEL	AAAT	AAAT	-			P-0038560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	154	263	0	ENST00000371953.3:c.987_990delTAAA	p.Asn329LysfsTer14	p.N329Kfs*14	ENST00000371953	NM_000314.4	328	gcAAAT/gc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940237	71940238	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCGTAC			P-0038560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	85	704	0	ENST00000298229.2:c.625_631dup	p.Leu211ProfsTer13	p.L211Pfs*13	ENST00000298229	NM_001567.3	208	acc/aCCCGTACcc																																																																															
NF1	4763	MSKCC	GRCh37	17	29559149	29559149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	30	281	0	ENST00000358273.4:c.3256C>T	p.Gln1086Ter	p.Q1086*	ENST00000358273	NM_001042492.2	1086	Cag/Tag																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	147	703	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850786	63850786	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	53	439	0	ENST00000279873.7:c.1564C>T	p.Gln522Ter	p.Q522*	ENST00000279873	NM_032199.2	522	Caa/Taa																																																																															
MGA	23269	MSKCC	GRCh37	15	42041351	42041352	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0038563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	47	559	0	ENST00000219905.7:c.5547_5548insTT	p.Glu1850LeufsTer16	p.E1850Lfs*16	ENST00000219905	NM_001164273.1	1849	tct/tcTTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29559860	29559860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	21	264	0	ENST00000358273.4:c.3457C>A	p.Leu1153Ile	p.L1153I	ENST00000358273	NM_001042492.2	1153	Ctc/Atc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46602902	46602902	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	56	749	0	ENST00000263734.3:c.960G>T	p.Glu320Asp	p.E320D	ENST00000263734	NM_001430.4	320	gaG/gaT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539012	187539012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	47	439	0	ENST00000441802.2:c.8728G>A	p.Asp2910Asn	p.D2910N	ENST00000441802	NM_005245.3	2910	Gat/Aat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0038566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	119	566	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	40	312	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221743	55221743	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	75	503	0	ENST00000275493.2:c.787A>C	p.Thr263Pro	p.T263P	ENST00000275493	NM_005228.3	263	Acc/Ccc																																																																															
RARA	5914	MSKCC	GRCh37	17	38510609	38510609	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	35	597	1	ENST00000254066.5:c.863A>G	p.Asp288Gly	p.D288G	ENST00000254066	NM_000964.3	288	gAc/gGc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59793426	59793460	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TAATAATTTTAAAATATATTTAAAAAATTAGTAGA	TAATAATTTTAAAATATATTTAAAAAATTAGTAGA	-			P-0038566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	29	279	0	ENST00000259008.2:c.2380-36_2380-2del		p.X794_splice	ENST00000259008	NM_032043.2	794																																																																																
PAK7	57144	MSKCC	GRCh37	20	9561231	9561231	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	27	397	0	ENST00000353224.5:c.551A>T	p.Glu184Val	p.E184V	ENST00000353224	NM_177990.2	184	gAg/gTg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739858	145739858	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	239	742	0	ENST00000428558.2:c.1672A>G	p.Thr558Ala	p.T558A	ENST00000428558	NM_004260.3	558	Acc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0038567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	528	727	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212456	5212456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	131	745	3	ENST00000357368.4:c.4661C>T	p.Ala1554Val	p.A1554V	ENST00000357368	NM_002850.3	1554	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175193	112175193	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	58	233	0	ENST00000257430.4:c.3904delC	p.Leu1302CysfsTer3	p.L1302Cfs*3	ENST00000257430	NM_000038.5	1301	aCc/ac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061439	38061439	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	214	561	0	ENST00000250448.2:c.550del	p.Gln184SerfsTer10	p.Q184Sfs*10	ENST00000250448	NM_004496.3	184	Cag/ag																																																																															
CARM1	10498	MSKCC	GRCh37	19	11024679	11024679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	129	524	0	ENST00000327064.4:c.796G>A	p.Glu266Lys	p.E266K	ENST00000327064	NM_199141.1	266	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	65	419	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782645	9782645	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	149	787	0	ENST00000377346.4:c.2407C>A	p.Gln803Lys	p.Q803K	ENST00000377346	NM_005026.3	803	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579573	7579585	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGGACGGCAAG	TTGGGACGGCAAG	-			P-0038625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	90	694	0	ENST00000269305.4:c.102_114del	p.Leu35GlnfsTer5	p.L35Qfs*5	ENST00000269305	NM_001126112.2	34	ccCTTGCCGTCCCAA/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	68	483	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0038626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	122	1020	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857910	9857910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	76	573	1	ENST00000330684.3:c.3491C>T	p.Thr1164Met	p.T1164M	ENST00000330684	NM_001134407.1	1164	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175271	112175271	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	77	273	0	ENST00000257430.4:c.3980C>G	p.Ser1327Ter	p.S1327*	ENST00000257430	NM_000038.5	1327	tCa/tGa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584725	48584725	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	74	450	0	ENST00000342988.3:c.803G>A	p.Trp268Ter	p.W268*	ENST00000342988	NM_005359.5	268	tGg/tAg																																																																															
IGF1	3479	MSKCC	GRCh37	12	102869492	102869492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	73	585	1	ENST00000307046.8:c.149C>T	p.Pro50Leu	p.P50L	ENST00000307046	NM_001111285.1	50	cCg/cTg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59876491	59876491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	69	477	0	ENST00000259008.2:c.1310C>T	p.Pro437Leu	p.P437L	ENST00000259008	NM_032043.2	437	cCc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	335	424	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0038627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	492	553	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	304	605	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871145	12871146	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0038627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	132	319	0	ENST00000228872.4:c.374_375del	p.Ser125Ter	p.S125*	ENST00000228872	NM_004064.3	124	aaCTct/aact																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799734	72799734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	274	660	0	ENST00000325599.8:c.1435G>A	p.Glu479Lys	p.E479K	ENST00000325599	NM_018130.2	479	Gaa/Aaa																																																																															
AXL	558	MSKCC	GRCh37	19	41727880	41727880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	94	929	1	ENST00000301178.4:c.505G>A	p.Val169Met	p.V169M	ENST00000301178	NM_021913.4	169	Gtg/Atg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67650768	67650768	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	292	542	0	ENST00000264010.4:c.1073A>G	p.Tyr358Cys	p.Y358C	ENST00000264010	NM_006565.3	358	tAc/tGc																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873077	136873077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	109	487	0	ENST00000241393.3:c.421G>T	p.Ala141Ser	p.A141S	ENST00000241393	NM_003467.2	141	Gcc/Tcc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010560	48010560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	119	645	0	ENST00000234420.5:c.188C>T	p.Ser63Phe	p.S63F	ENST00000234420	NM_000179.2	63	tCc/tTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343132	118343132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	52	347	0	ENST00000534358.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000534358	NM_005933.3	420	Cgg/Tgg																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166026	118166026	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	93	453	0	ENST00000369448.3:c.536T>A	p.Phe179Tyr	p.F179Y	ENST00000369448	NM_017709.3	179	tTc/tAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18466934	18466934	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	161	413	0	ENST00000266497.5:c.1073A>G	p.Asp358Gly	p.D358G	ENST00000266497		358	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579565	7579583	+	frameshift_variant	Frame_Shift_Del	DEL	TCCATTGCTTGGGACGGCA	TCCATTGCTTGGGACGGCA	CCC			P-0038630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	192	759	3	ENST00000269305.4:c.104_122delinsGGG	p.Leu35TrpfsTer4	p.L35Wfs*4	ENST00000269305	NM_001126112.2	35	tTGCCGTCCCAAGCAATGGAt/tGGGt																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46597047	46597047	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	91	496	0	ENST00000263734.3:c.861G>C	p.Glu287Asp	p.E287D	ENST00000263734	NM_001430.4	287	gaG/gaC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860221	151860221	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	179	483	1	ENST00000262189.6:c.10441C>T	p.Gln3481Ter	p.Q3481*	ENST00000262189	NM_170606.2	3481	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0038636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	242	741	2	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0038636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	212	826	2	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
SRC	6714	MSKCC	GRCh37	20	36012701	36012701	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	48	177	1	ENST00000358208.4:c.145G>T	p.Gly49Cys	p.G49C	ENST00000358208		49	Ggc/Tgc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876566	35876566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	92	540	0	ENST00000303115.3:c.1358C>A	p.Ser453Tyr	p.S453Y	ENST00000303115	NM_002185.3	453	tCc/tAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151902221	151902221	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	62	593	0	ENST00000262189.6:c.3931A>G	p.Ile1311Val	p.I1311V	ENST00000262189	NM_170606.2	1311	Att/Gtt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	160	408	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0038642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	126	512	1	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	414	873	0	ENST00000269305.4:c.434T>G	p.Leu145Arg	p.L145R	ENST00000269305	NM_001126112.2	145	cTg/cGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425125	49425125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	434	837	0	ENST00000301067.7:c.13363C>T	p.Arg4455Cys	p.R4455C	ENST00000301067	NM_003482.3	4455	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	78	444	3	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0038647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	751	790	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0038647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	247	383	3	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748596	40748596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	172	513	1	ENST00000373198.4:c.2920C>T	p.Arg974Trp	p.R974W	ENST00000373198	NM_133170.3	974	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575150	48575150	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	85	396	1	ENST00000342988.3:c.344G>C	p.Cys115Ser	p.C115S	ENST00000342988	NM_005359.5	115	tGt/tCt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916924	178916924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225060		P-0038647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	91	565	4	ENST00000263967.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000263967	NM_006218.2	104	cCa/cTa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411441	63411441	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	732	446	4	ENST00000330258.3:c.1726G>T	p.Glu576Ter	p.E576*	ENST00000330258	NM_152424.3	576	Gag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880997	37880998	+	protein_altering_variant	In_Frame_Ins	INS	-	-	CTGTGGGCT			P-0001758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			820	351	396	0	ENST00000269571.5:c.2326_2327insCTGTGGGCT	p.Gly776delinsAlaValGlyCys	p.G776delinsAVGC	ENST00000269571		776	ggt/gCTGTGGGCTgt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880997	37880998	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TGT			P-0002320-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1217	1254	369	0	ENST00000269571.5:c.2326_2327insTGT	p.Gly776delinsValCys	p.G776delinsVC	ENST00000269571		776	ggt/gTGTgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002320-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1201	170	382	0	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543896	212543896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002320-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1343	105	361	0	ENST00000342788.4:c.1503G>A	p.Met501Ile	p.M501I	ENST00000342788	NM_005235.2	501	atG/atA																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950694	38950694	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002320-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1759	146	480	0	ENST00000357387.3:c.3256C>G	p.Pro1086Ala	p.P1086A	ENST00000357387	NM_152756.3	1086	Cct/Gct																																																																															
PAK1	5058	MSKCC	GRCh37	11	77103412	77103412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002320-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1747	177	467	0	ENST00000356341.3:c.154G>A	p.Asp52Asn	p.D52N	ENST00000356341	NM_002576.4	52	Gac/Aac																																																																															
CDK12	51755	MSKCC	GRCh37	17	37649132	37649132	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002320-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1345	91	248	0	ENST00000447079.4:c.2237A>G	p.Asp746Gly	p.D746G	ENST00000447079	NM_015083.1	746	gAc/gGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	166	236	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0006162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	345	492	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	270	322	1	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417865	138417865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	52	450	1	ENST00000289153.2:c.1654G>A	p.Glu552Lys	p.E552K	ENST00000289153	NM_006219.2	552	Gaa/Aaa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001539	150001539	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	197	255	0	ENST00000253339.5:c.2065G>C	p.Glu689Gln	p.E689Q	ENST00000253339		689	Gaa/Caa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265533	152265533	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	191	334	0	ENST00000206249.3:c.986C>A	p.Ser329Tyr	p.S329Y	ENST00000206249	NM_000125.3	329	tCc/tAc																																																																															
BTK	695	MSKCC	GRCh37	X	100611806	100611806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	388	559	1	ENST00000308731.7:c.1315G>A	p.Glu439Lys	p.E439K	ENST00000308731	NM_000061.2	439	Gaa/Aaa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463300	25463301	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TTT			P-0006162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	206	346	0	ENST00000264709.3:c.2192_2193insAAA	p.Phe731delinsLeuAsn	p.F731delinsLN	ENST00000264709	NM_175629.2	731	ttc/ttAAAc																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2489217	2489217	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	287	642	0	ENST00000355716.4:c.122C>A	p.Ser41Tyr	p.S41Y	ENST00000355716	NM_003820.2	41	tCc/tAc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073341	8073341	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	480	893	0	ENST00000377482.5:c.1318G>T	p.Asp440Tyr	p.D440Y	ENST00000377482	NM_018948.3	440	Gac/Tac																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073460	8073460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1080	497	1119	1	ENST00000377482.5:c.1199G>A	p.Arg400Gln	p.R400Q	ENST00000377482	NM_018948.3	400	cGa/cAa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16246013	16246013	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	320	535	0	ENST00000375759.3:c.1635+1G>A		p.X545_splice	ENST00000375759	NM_015001.2	545																																																																																
SPEN	23013	MSKCC	GRCh37	1	16255346	16255346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151043425		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	431	732	1	ENST00000375759.3:c.2611C>T	p.Arg871Cys	p.R871C	ENST00000375759	NM_015001.2	871	Cgc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256547	16256547	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	277	590	0	ENST00000375759.3:c.3812A>G	p.Glu1271Gly	p.E1271G	ENST00000375759	NM_015001.2	1271	gAa/gGa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257770	16257770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	197	385	0	ENST00000375759.3:c.5035G>A	p.Val1679Ile	p.V1679I	ENST00000375759	NM_015001.2	1679	Gtc/Atc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260257	16260257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	117	238	1	ENST00000375759.3:c.7522C>T	p.Pro2508Ser	p.P2508S	ENST00000375759	NM_015001.2	2508	Cca/Tca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056224	27056224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	297	527	0	ENST00000324856.7:c.1220C>T	p.Pro407Leu	p.P407L	ENST00000324856	NM_006015.4	407	cCt/cTt																																																																															
JUN	3725	MSKCC	GRCh37	1	59248451	59248451	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	51	462	0	ENST00000371222.2:c.292C>A	p.Leu98Met	p.L98M	ENST00000371222	NM_002228.3	98	Ctg/Atg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458467	120458467	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	131	371	0	ENST00000256646.2:c.6878A>G	p.His2293Arg	p.H2293R	ENST00000256646	NM_024408.3	2293	cAc/cGc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466432	120466432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	313	588	1	ENST00000256646.2:c.4687C>T	p.Arg1563Cys	p.R1563C	ENST00000256646	NM_024408.3	1563	Cgc/Tgc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162735790	162735790	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	257	489	1	ENST00000367921.3:c.1100-1G>T		p.X367_splice	ENST00000367921	NM_006182.2	367																																																																																
DDR2	4921	MSKCC	GRCh37	1	162742026	162742026	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	306	548	0	ENST00000367921.3:c.1717C>T	p.Gln573Ter	p.Q573*	ENST00000367921	NM_006182.2	573	Cag/Tag																																																																															
MDM4	4194	MSKCC	GRCh37	1	204513673	204513673	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	39	378	0	ENST00000367182.3:c.683C>A	p.Thr228Asn	p.T228N	ENST00000367182	NM_001278516.1	228	aCt/aAt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206658404	206658404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	242	501	0	ENST00000367120.3:c.1498C>T	p.Arg500Trp	p.R500W	ENST00000367120	NM_014002.3	500	Cgg/Tgg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206665012	206665012	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	335	514	0	ENST00000367120.3:c.1765C>A	p.Leu589Met	p.L589M	ENST00000367120	NM_014002.3	589	Ctg/Atg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470027	25470027	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	180	370	0	ENST00000264709.3:c.1015G>A	p.Val339Met	p.V339M	ENST00000264709	NM_175629.2	339	Gtg/Atg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965935	25965935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	284	580	2	ENST00000435504.4:c.3271G>A	p.Ala1091Thr	p.A1091T	ENST00000435504		1091	Gct/Act																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25978956	25978956	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	333	536	0	ENST00000435504.4:c.967A>C	p.Asn323His	p.N323H	ENST00000435504		323	Aat/Cat																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25991736	25991736	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs530632623		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	199	388	0	ENST00000435504.4:c.506C>T	p.Ala169Val	p.A169V	ENST00000435504		169	gCg/gTg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026852	48026852	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376220212		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	266	563	0	ENST00000234420.5:c.1730G>A	p.Arg577His	p.R577H	ENST00000234420	NM_000179.2	577	cGc/cAc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027043	48027043	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	252	508	0	ENST00000234420.5:c.1921G>T	p.Glu641Ter	p.E641*	ENST00000234420	NM_000179.2	641	Gaa/Taa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48028265	48028265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	147	487	1	ENST00000234420.5:c.3143A>G	p.Gln1048Arg	p.Q1048R	ENST00000234420	NM_000179.2	1048	cAg/cGg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033753	48033753	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	234	506	0	ENST00000234420.5:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000234420	NM_000179.2	1322	Gaa/Taa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61715401	61715401	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	115	423	0	ENST00000401558.2:c.2212A>C	p.Met738Leu	p.M738L	ENST00000401558	NM_003400.3	738	Atg/Ctg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99172215	99172215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	271	544	0	ENST00000074304.5:c.1781C>T	p.Ser594Phe	p.S594F	ENST00000074304	NM_001134224.1	594	tCc/tTc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99189362	99189362	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	244	488	0	ENST00000074304.5:c.2618A>C	p.Asn873Thr	p.N873T	ENST00000074304	NM_001134224.1	873	aAc/aCc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128047800	128047800	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	301	579	0	ENST00000285398.2:c.521G>T	p.Arg174Ile	p.R174I	ENST00000285398	NM_000122.1	174	aGa/aTa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095520	178095520	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	221	423	0	ENST00000397062.3:c.1811A>C	p.Lys604Thr	p.K604T	ENST00000397062	NM_006164.4	604	aAa/aCa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198268346	198268346	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	279	504	0	ENST00000335508.6:c.1682A>T	p.Tyr561Phe	p.Y561F	ENST00000335508	NM_012433.2	561	tAc/tTc																																																																															
CASP8	841	MSKCC	GRCh37	2	202136238	202136238	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	253	515	0	ENST00000358485.4:c.483-1G>T		p.X161_splice	ENST00000358485	NM_001080125.1	161																																																																																
CTLA4	1493	MSKCC	GRCh37	2	204735458	204735458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	279	519	0	ENST00000302823.3:c.259G>A	p.Ala87Thr	p.A87T	ENST00000302823	NM_005214.4	87	Gca/Aca																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543829	212543829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	273	460	0	ENST00000342788.4:c.1570C>T	p.Arg524Cys	p.R524C	ENST00000342788	NM_005235.2	524	Cgc/Tgc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212578349	212578349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	179	375	1	ENST00000342788.4:c.908C>A	p.Ser303Tyr	p.S303Y	ENST00000342788	NM_005235.2	303	tCt/tAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812251	212812251	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	72	506	0	ENST00000342788.4:c.325A>C	p.Lys109Gln	p.K109Q	ENST00000342788	NM_005235.2	109	Aaa/Caa																																																																															
BARD1	580	MSKCC	GRCh37	2	215593434	215593434	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	39	457	0	ENST00000260947.4:c.2300T>C	p.Val767Ala	p.V767A	ENST00000260947	NM_000465.2	767	gTg/gCg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659832	227659832	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	95	163	0	ENST00000305123.5:c.3623A>G	p.His1208Arg	p.H1208R	ENST00000305123	NM_005544.2	1208	cAt/cGt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662924	227662924	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	338	628	1	ENST00000305123.5:c.531G>T	p.Lys177Asn	p.K177N	ENST00000305123	NM_005544.2	177	aaG/aaT																																																																															
RAF1	5894	MSKCC	GRCh37	3	12633244	12633244	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	127	570	1	ENST00000251849.4:c.1156C>T	p.Gln386Ter	p.Q386*	ENST00000251849	NM_002880.3	386	Caa/Taa																																																																															
RAF1	5894	MSKCC	GRCh37	3	12650355	12650355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	338	569	1	ENST00000251849.4:c.491G>A	p.Arg164Gln	p.R164Q	ENST00000251849	NM_002880.3	164	cGa/cAa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274877	41274877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	238	490	1	ENST00000349496.5:c.1127G>A	p.Arg376His	p.R376H	ENST00000349496	NM_001904.3	376	cGt/cAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162449	47162449	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	285	521	0	ENST00000409792.3:c.3677C>A	p.Pro1226Gln	p.P1226Q	ENST00000409792	NM_014159.6	1226	cCa/cAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162783	47162783	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	127	381	1	ENST00000409792.3:c.3343G>T	p.Glu1115Ter	p.E1115*	ENST00000409792	NM_014159.6	1115	Gaa/Taa																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934752	49934752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	369	704	1	ENST00000296474.3:c.2144G>A	p.Arg715Gln	p.R715Q	ENST00000296474	NM_002447.2	715	cGg/cAg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436399	52436399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	240	457	3	ENST00000460680.1:c.2095C>T	p.Arg699Trp	p.R699W	ENST00000460680	NM_004656.3	699	Cgg/Tgg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	206	402	0	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643540	52643540	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	310	580	0	ENST00000394830.3:c.2356T>G	p.Phe786Val	p.F786V	ENST00000394830	NM_018313.4	786	Ttt/Gtt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643768	52643768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	249	541	1	ENST00000394830.3:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000394830	NM_018313.4	710	Cga/Tga																																																																															
MITF	4286	MSKCC	GRCh37	3	69987148	69987148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	235	462	0	ENST00000352241.4:c.530C>T	p.Ala177Val	p.A177V	ENST00000352241	NM_198159.2	177	gCa/gTa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71008489	71008489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	172	592	0	ENST00000318789.4:c.1943C>T	p.Pro648Leu	p.P648L	ENST00000318789	NM_032682.5	648	cCc/cTc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247463	71247463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	292	479	0	ENST00000318789.4:c.70A>G	p.Asn24Asp	p.N24D	ENST00000318789	NM_032682.5	24	Aac/Gac																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72890203	72890203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	264	570	0	ENST00000325599.8:c.479G>A	p.Arg160Gln	p.R160Q	ENST00000325599	NM_018130.2	160	cGg/cAg																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72891469	72891469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	76	444	0	ENST00000325599.8:c.293G>T	p.Arg98Ile	p.R98I	ENST00000325599	NM_018130.2	98	aGa/aTa																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72891538	72891538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	210	443	2	ENST00000325599.8:c.224G>A	p.Arg75His	p.R75H	ENST00000325599	NM_018130.2	75	cGc/cAc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448624	89448624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	247	527	2	ENST00000336596.2:c.1588C>T	p.Pro530Ser	p.P530S	ENST00000336596	NM_005233.5	530	Cca/Tca																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119562107	119562107	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139402886		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	251	493	0	ENST00000316626.5:c.1229C>T	p.Ala410Val	p.A410V	ENST00000316626		410	gCg/gTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911523	134911523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	67	601	0	ENST00000398015.3:c.1988G>A	p.Arg663Gln	p.R663Q	ENST00000398015	NM_004441.4	663	cGg/cAg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138409931	138409931	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	300	454	1	ENST00000289153.2:c.1947G>T	p.Glu649Asp	p.E649D	ENST00000289153	NM_006219.2	649	gaG/gaT																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138478146	138478146	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	307	516	0	ENST00000289153.2:c.40A>C	p.Ile14Leu	p.I14L	ENST00000289153	NM_006219.2	14	Atc/Ctc																																																																															
ATR	545	MSKCC	GRCh37	3	142185236	142185236	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	165	598	0	ENST00000350721.4:c.6827C>A	p.Thr2276Asn	p.T2276N	ENST00000350721	NM_001184.3	2276	aCc/aAc																																																																															
ATR	545	MSKCC	GRCh37	3	142278201	142278201	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	173	382	0	ENST00000350721.4:c.1624A>C	p.Lys542Gln	p.K542Q	ENST00000350721	NM_001184.3	542	Aaa/Caa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178948056	178948056	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	237	439	0	ENST00000263967.3:c.2828A>C	p.Lys943Thr	p.K943T	ENST00000263967	NM_006218.2	943	aAa/aCa																																																																															
TP63	8626	MSKCC	GRCh37	3	189526194	189526194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	320	580	2	ENST00000264731.3:c.458G>T	p.Ser153Ile	p.S153I	ENST00000264731	NM_003722.4	153	aGc/aTc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808862	1808862	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140211846		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	147	623	1	ENST00000260795.2:c.2294C>T	p.Ala765Val	p.A765V	ENST00000260795		765	gCg/gTg																																																																															
FIP1L1	81608	MSKCC	GRCh37	4	54280854	54280854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	362	592	0	ENST00000337488.6:c.888G>T	p.Gln296His	p.Q296H	ENST00000337488	NM_030917.3	296	caG/caT																																																																															
KDR	3791	MSKCC	GRCh37	4	55962398	55962398	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	293	646	0	ENST00000263923.4:c.2726G>A	p.Gly909Glu	p.G909E	ENST00000263923	NM_002253.2	909	gGa/gAa																																																																															
KDR	3791	MSKCC	GRCh37	4	55991433	55991433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	220	555	1	ENST00000263923.4:c.28G>A	p.Ala10Thr	p.A10T	ENST00000263923	NM_002253.2	10	Gcc/Acc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231680	66231680	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	264	555	0	ENST00000273854.3:c.2020T>C	p.Cys674Arg	p.C674R	ENST00000273854	NM_004439.5	674	Tgt/Cgt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270122	66270122	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140536477		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	330	633	0	ENST00000273854.3:c.1760C>T	p.Ala587Val	p.A587V	ENST00000273854	NM_004439.5	587	gCa/gTa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467697	66467697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	39	474	0	ENST00000273854.3:c.572G>A	p.Arg191His	p.R191H	ENST00000273854	NM_004439.5	191	cGt/cAt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143350344	143350344	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	111	324	0	ENST00000262992.4:c.118C>T	p.Gln40Ter	p.Q40*	ENST00000262992	NM_001101669.1	40	Cag/Tag																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143350355	143350355	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	22	307	0	ENST00000262992.4:c.107C>A	p.Pro36Gln	p.P36Q	ENST00000262992	NM_001101669.1	36	cCa/cAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	273	427	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247174	153247174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	219	497	0	ENST00000281708.4:c.1628G>A	p.Arg543Lys	p.R543K	ENST00000281708	NM_033632.3	543	aGa/aAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534377	187534377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	259	574	1	ENST00000441802.2:c.9349G>A	p.Asp3117Asn	p.D3117N	ENST00000441802	NM_005245.3	3117	Gat/Aat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538862	187538862	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	37	362	0	ENST00000441802.2:c.8878G>T	p.Gly2960Ter	p.G2960*	ENST00000441802	NM_005245.3	2960	Gga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540027	187540027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	124	557	0	ENST00000441802.2:c.7713G>T	p.Lys2571Asn	p.K2571N	ENST00000441802	NM_005245.3	2571	aaG/aaT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549707	187549707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	82	545	1	ENST00000441802.2:c.4534G>A	p.Gly1512Ser	p.G1512S	ENST00000441802	NM_005245.3	1512	Ggc/Agc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557302	187557302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	339	580	1	ENST00000441802.2:c.4060G>A	p.Glu1354Lys	p.E1354K	ENST00000441802	NM_005245.3	1354	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629619	187629619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	50	476	1	ENST00000441802.2:c.1363G>T	p.Gly455Cys	p.G455C	ENST00000441802	NM_005245.3	455	Ggt/Tgt																																																																															
SDHA	6389	MSKCC	GRCh37	5	251567	251567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	58	514	0	ENST00000264932.6:c.1778C>T	p.Ala593Val	p.A593V	ENST00000264932	NM_004168.2	593	gCc/gTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1278854	1278854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	54	503	3	ENST00000310581.5:c.2188G>A	p.Ala730Thr	p.A730T	ENST00000310581	NM_198253.2	730	Gcc/Acc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38944623	38944623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	211	485	0	ENST00000357387.3:c.4838G>A	p.Arg1613His	p.R1613H	ENST00000357387	NM_152756.3	1613	cGc/cAc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39002730	39002730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	321	444	0	ENST00000357387.3:c.299G>A	p.Arg100Gln	p.R100Q	ENST00000357387	NM_152756.3	100	cGa/cAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181765	56181765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	189	368	4	ENST00000399503.3:c.3989C>T	p.Ser1330Leu	p.S1330L	ENST00000399503	NM_005921.1	1330	tCg/tTg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86659288	86659288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	77	544	1	ENST00000274376.6:c.1577C>A	p.Ser526Tyr	p.S526Y	ENST00000274376	NM_002890.2	526	tCt/tAt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86665672	86665672	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	167	376	0	ENST00000274376.6:c.1653A>C	p.Glu551Asp	p.E551D	ENST00000274376	NM_002890.2	551	gaA/gaC																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672844	86672844	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	184	289	0	ENST00000274376.6:c.2331A>C	p.Glu777Asp	p.E777D	ENST00000274376	NM_002890.2	777	gaA/gaC																																																																															
APC	324	MSKCC	GRCh37	5	112173647	112173647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	226	479	0	ENST00000257430.4:c.2356C>T	p.Arg786Cys	p.R786C	ENST00000257430	NM_000038.5	786	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	337	666	2	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	191	429	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149505025	149505025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	244	453	0	ENST00000261799.4:c.1790G>A	p.Arg597Gln	p.R597Q	ENST00000261799	NM_002609.3	597	cGg/cAg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518782	176518782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	272	488	0	ENST00000292408.4:c.700C>T	p.Arg234Cys	p.R234C	ENST00000292408	NM_213647.1	234	Cgc/Tgc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523357	176523357	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	221	532	0	ENST00000292408.4:c.2014G>A	p.Val672Met	p.V672M	ENST00000292408	NM_213647.1	672	Gtg/Atg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047965	180047965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	230	549	0	ENST00000261937.6:c.2210G>A	p.Arg737His	p.R737H	ENST00000261937	NM_182925.4	737	cGc/cAc																																																																															
IRF4	3662	MSKCC	GRCh37	6	394896	394896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	113	442	1	ENST00000380956.4:c.292C>T	p.Arg98Trp	p.R98W	ENST00000380956	NM_001195286.1	98	Cgg/Tgg																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225539	26225539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1180	605	1148	0	ENST00000360408.1:c.157C>T	p.Arg53Cys	p.R53C	ENST00000360408	NM_003532.2	53	Cgt/Tgt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912857	29912857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	38	296	0	ENST00000376809.5:c.1034C>T	p.Thr345Ile	p.T345I	ENST00000376809	NM_002116.7	345	aCt/aTt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670344	30670344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	432	680	0	ENST00000376406.3:c.6088C>T	p.Pro2030Ser	p.P2030S	ENST00000376406	NM_014641.2	2030	Cct/Tct																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673724	30673724	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61733207		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	300	575	1	ENST00000376406.3:c.3236G>A	p.Arg1079His	p.R1079H	ENST00000376406	NM_014641.2	1079	cGt/cAt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681476	30681476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	314	561	2	ENST00000376406.3:c.536G>A	p.Arg179His	p.R179H	ENST00000376406	NM_014641.2	179	cGt/cAt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93968000	93968000	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	307	550	1	ENST00000369303.4:c.1927G>T	p.Glu643Ter	p.E643*	ENST00000369303	NM_004440.3	643	Gaa/Taa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93969189	93969189	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	345	658	0	ENST00000369303.4:c.1807C>A	p.Pro603Thr	p.P603T	ENST00000369303	NM_004440.3	603	Cca/Aca																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979215	93979215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	365	712	1	ENST00000369303.4:c.1613C>T	p.Ala538Val	p.A538V	ENST00000369303	NM_004440.3	538	gCt/gTt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553011	106553011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	220	463	1	ENST00000369096.4:c.976C>T	p.Arg326Cys	p.R326C	ENST00000369096	NM_001198.3	326	Cgc/Tgc																																																																															
FYN	2534	MSKCC	GRCh37	6	112029156	112029156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1251	116	777	1	ENST00000368678.4:c.412G>A	p.Val138Met	p.V138M	ENST00000368678		138	Gtg/Atg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117629975	117629975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	209	498	0	ENST00000368508.3:c.6551G>T	p.Arg2184Ile	p.R2184I	ENST00000368508	NM_002944.2	2184	aGa/aTa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117708052	117708052	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	235	517	0	ENST00000368508.3:c.2125G>T	p.Asp709Tyr	p.D709Y	ENST00000368508	NM_002944.2	709	Gac/Tac																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519291	137519291	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	125	489	0	ENST00000367739.4:c.1347A>G	p.Ile449Met	p.I449M	ENST00000367739	NM_000416.2	449	atA/atG																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997697	149997697	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs145871963		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	213	422	0	ENST00000253339.5:c.2770C>T	p.Arg924Ter	p.R924*	ENST00000253339		924	Cga/Tga																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001176	150001176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	346	667	0	ENST00000253339.5:c.2428G>A	p.Ala810Thr	p.A810T	ENST00000253339		810	Gca/Aca																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005300	150005300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	346	597	0	ENST00000253339.5:c.925C>T	p.Pro309Ser	p.P309S	ENST00000253339		309	Ccc/Tcc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023019	150023019	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	362	648	1	ENST00000253339.5:c.244C>T	p.Arg82Ter	p.R82*	ENST00000253339		82	Cga/Tga																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023160	150023160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	311	584	2	ENST00000253339.5:c.103C>T	p.Arg35Trp	p.R35W	ENST00000253339		35	Cgg/Tgg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265353	152265353	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188957694		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	289	592	0	ENST00000206249.3:c.806G>A	p.Arg269His	p.R269H	ENST00000206249	NM_000125.3	269	cGc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100605	157100605	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	193	412	0	ENST00000346085.5:c.1542G>T	p.Gln514His	p.Q514H	ENST00000346085	NM_020732.3	514	caG/caT																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157517397	157517397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	377	581	0	ENST00000346085.5:c.3961C>A	p.Leu1321Met	p.L1321M	ENST00000346085	NM_020732.3	1321	Ctg/Atg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527797	157527797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	225	395	1	ENST00000346085.5:c.5522C>T	p.Pro1841Leu	p.P1841L	ENST00000346085	NM_020732.3	1841	cCt/cTt																																																																															
PARK2	5071	MSKCC	GRCh37	6	161807903	161807903	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	232	434	0	ENST00000366898.1:c.1090T>G	p.Phe364Val	p.F364V	ENST00000366898	NM_004562.2	364	Ttc/Gtc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976831	2976831	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753594488		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	283	568	0	ENST00000396946.4:c.1181C>T	p.Ser394Leu	p.S394L	ENST00000396946	NM_032415.4	394	tCg/tTg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935661	13935661	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	45	516	0	ENST00000405192.2:c.1195T>C	p.Phe399Leu	p.F399L	ENST00000405192	NM_001163147.1	399	Ttc/Ctc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946171	13946171	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	210	474	0	ENST00000405192.2:c.925C>T	p.Arg309Ter	p.R309*	ENST00000405192	NM_001163147.1	309	Cga/Tga																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946222	13946222	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	97	273	1	ENST00000405192.2:c.874G>T	p.Asp292Tyr	p.D292Y	ENST00000405192	NM_001163147.1	292	Gac/Tac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242511	55242511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	281	394	0	ENST00000275493.2:c.2281G>A	p.Asp761Asn	p.D761N	ENST00000275493	NM_005228.3	761	Gat/Aat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259469	55259469	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146795390		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	48	554	2	ENST00000275493.2:c.2527G>A	p.Val843Ile	p.V843I	ENST00000275493	NM_005228.3	843	Gta/Ata																																																																															
HGF	3082	MSKCC	GRCh37	7	81372746	81372746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	294	568	2	ENST00000222390.5:c.788C>T	p.Pro263Leu	p.P263L	ENST00000222390	NM_000601.4	263	cCc/cTc																																																																															
HGF	3082	MSKCC	GRCh37	7	81374361	81374361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	371	506	2	ENST00000222390.5:c.701G>A	p.Arg234His	p.R234H	ENST00000222390	NM_000601.4	234	cGc/cAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836323	151836323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	277	398	1	ENST00000262189.6:c.14482C>T	p.Arg4828Cys	p.R4828C	ENST00000262189	NM_170606.2	4828	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845244	151845244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	98	527	0	ENST00000262189.6:c.13768C>T	p.Arg4590Cys	p.R4590C	ENST00000262189	NM_170606.2	4590	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845763	151845763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	425	565	2	ENST00000262189.6:c.13249G>A	p.Ala4417Thr	p.A4417T	ENST00000262189	NM_170606.2	4417	Gca/Aca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874052	151874052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	348	563	0	ENST00000262189.6:c.8486C>T	p.Pro2829Leu	p.P2829L	ENST00000262189	NM_170606.2	2829	cCa/cTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874626	151874626	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	288	530	0	ENST00000262189.6:c.7912T>G	p.Ser2638Ala	p.S2638A	ENST00000262189	NM_170606.2	2638	Tct/Gct																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152055755	152055755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	186	390	0	ENST00000262189.6:c.167G>A	p.Arg56Gln	p.R56Q	ENST00000262189	NM_170606.2	56	cGa/cAa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271174	38271174	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	139	339	0	ENST00000425967.3:c.2534T>G	p.Leu845Arg	p.L845R	ENST00000425967	NM_001174067.1	845	cTt/cGt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38287397	38287397	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145315779		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	252	515	0	ENST00000425967.3:c.260G>A	p.Arg87His	p.R87H	ENST00000425967	NM_001174067.1	87	cGc/cAc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117870684	117870684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	69	813	0	ENST00000297338.2:c.388G>A	p.Ala130Thr	p.A130T	ENST00000297338	NM_006265.2	130	Gcc/Acc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738064	145738064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	52	690	1	ENST00000428558.2:c.2846G>A	p.Cys949Tyr	p.C949Y	ENST00000428558	NM_004260.3	949	tGc/tAc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5072504	5072504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	158	307	0	ENST00000381652.3:c.1654G>A	p.Gly552Ser	p.G552S	ENST00000381652	NM_004972.3	552	Ggc/Agc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319950	8319950	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	308	398	0	ENST00000356435.5:c.5551A>G	p.Thr1851Ala	p.T1851A	ENST00000356435		1851	Act/Gct																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404576	8404576	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146844299		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	363	558	1	ENST00000356435.5:c.4171G>A	p.Ala1391Thr	p.A1391T	ENST00000356435		1391	Gca/Aca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8733794	8733794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	386	520	1	ENST00000356435.5:c.50G>A	p.Arg17His	p.R17H	ENST00000356435		17	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974798	21974798	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	35	150	0	ENST00000304494.5:c.29A>T	p.Glu10Val	p.E10V	ENST00000304494	NM_000077.4	10	gAg/gTg																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80343580	80343580	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	320	274	0	ENST00000286548.4:c.739C>T	p.Arg247Ter	p.R247*	ENST00000286548	NM_002072.3	247	Cga/Tga																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80646130	80646130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			62	18	42	0	ENST00000286548.4:c.22G>T	p.Ala8Ser	p.A8S	ENST00000286548	NM_002072.3	8	Gcg/Tcg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87482158	87482158	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs149694868		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	210	444	0	ENST00000277120.3:c.1445G>A	p.Gly482Asp	p.G482D	ENST00000277120		482	gGc/gAc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635252	87635252	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	332	399	0	ENST00000277120.3:c.2304G>T	p.Gln768His	p.Q768H	ENST00000277120		768	caG/caT																																																																															
SYK	6850	MSKCC	GRCh37	9	93637049	93637049	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	321	563	1	ENST00000375746.1:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000375746	NM_001174167.1	367	Cga/Tga																																																																															
SYK	6850	MSKCC	GRCh37	9	93639903	93639903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	91	461	0	ENST00000375746.1:c.1232C>T	p.Pro411Leu	p.P411L	ENST00000375746	NM_001174167.1	411	cCc/cTc																																																																															
SYK	6850	MSKCC	GRCh37	9	93650128	93650128	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1164	78	577	0	ENST00000375746.1:c.1679T>C	p.Val560Ala	p.V560A	ENST00000375746	NM_001174167.1	560	gTg/gCg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239912	98239912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	261	477	0	ENST00000331920.6:c.1420G>A	p.Val474Ile	p.V474I	ENST00000331920	NM_000264.3	474	Gtc/Atc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98248055	98248055	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	652	638	0	ENST00000331920.6:c.496G>T	p.Gly166Cys	p.G166C	ENST00000331920	NM_000264.3	166	Ggt/Tgt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270571	98270571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	79	86	0	ENST00000331920.6:c.73G>A	p.Gly25Arg	p.G25R	ENST00000331920	NM_000264.3	25	Gga/Aga																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891287	101891287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	550	537	1	ENST00000374994.4:c.248C>T	p.Pro83Leu	p.P83L	ENST00000374994	NM_004612.2	83	cCg/cTg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900171	101900171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	241	449	0	ENST00000374994.4:c.605C>T	p.Ala202Val	p.A202V	ENST00000374994	NM_004612.2	202	gCg/gTg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907074	101907074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	256	471	0	ENST00000374994.4:c.1034G>A	p.Gly345Glu	p.G345E	ENST00000374994	NM_004612.2	345	gGa/gAa																																																																															
ABL1	25	MSKCC	GRCh37	9	133730245	133730245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	278	543	2	ENST00000318560.5:c.311C>T	p.Thr104Ile	p.T104I	ENST00000318560	NM_005157.4	104	aCc/aTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396512	139396512	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	238	528	0	ENST00000277541.6:c.5413C>A	p.Leu1805Ile	p.L1805I	ENST00000277541	NM_017617.3	1805	Ctc/Atc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412717	139412717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	288	623	2	ENST00000277541.6:c.1127G>A	p.Cys376Tyr	p.C376Y	ENST00000277541	NM_017617.3	376	tGc/tAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417436	139417436	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182763411		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	165	604	1	ENST00000277541.6:c.608G>A	p.Arg203His	p.R203H	ENST00000277541	NM_017617.3	203	cGc/cAc																																																																															
RET	5979	MSKCC	GRCh37	10	43610186	43610186	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	296	801	0	ENST00000355710.3:c.2136+2T>C		p.X712_splice	ENST00000355710	NM_020975.4	712																																																																																
TET1	80312	MSKCC	GRCh37	10	70412277	70412277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	270	635	0	ENST00000373644.4:c.4387G>A	p.Ala1463Thr	p.A1463T	ENST00000373644	NM_030625.2	1463	Gca/Aca																																																																															
TET1	80312	MSKCC	GRCh37	10	70446203	70446203	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	45	530	0	ENST00000373644.4:c.5143G>T	p.Asp1715Tyr	p.D1715Y	ENST00000373644	NM_030625.2	1715	Gac/Tac																																																																															
TET1	80312	MSKCC	GRCh37	10	70446272	70446272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	233	394	0	ENST00000373644.4:c.5212G>T	p.Ala1738Ser	p.A1738S	ENST00000373644	NM_030625.2	1738	Gca/Tca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89693000	89693000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	144	274	0	ENST00000371953.3:c.484G>T	p.Asp162Tyr	p.D162Y	ENST00000371953	NM_000314.4	162	Gac/Tac																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123246935	123246935	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113014479		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	240	528	2	ENST00000358487.5:c.1990C>T	p.Arg664Trp	p.R664W	ENST00000358487	NM_000141.4	664	Cgg/Tgg																																																																															
IGF2	3481	MSKCC	GRCh37	11	2156668	2156668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	52	663	0	ENST00000434045.2:c.254G>A	p.Ser85Asn	p.S85N	ENST00000434045	NM_001127598.1	85	aGt/aAt																																																																															
LMO1	4004	MSKCC	GRCh37	11	8251961	8251961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	267	671	2	ENST00000335790.3:c.116C>T	p.Ala39Val	p.A39V	ENST00000335790	NM_002315.2	39	gCa/gTa																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741493	17741493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	243	436	0	ENST00000250003.3:c.164C>T	p.Ala55Val	p.A55V	ENST00000250003	NM_002478.4	55	gCg/gTg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137020	64137020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	274	479	0	ENST00000334205.4:c.1531C>T	p.Arg511Cys	p.R511C	ENST00000334205	NM_003942.2	511	Cgc/Tgc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202630	67202630	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	33	330	1	ENST00000312629.5:c.1439C>A	p.Pro480Gln	p.P480Q	ENST00000312629	NM_003952.2	480	cCa/cAa																																																																															
PAK1	5058	MSKCC	GRCh37	11	77090300	77090300	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	335	589	0	ENST00000356341.3:c.425A>G	p.Tyr142Cys	p.Y142C	ENST00000356341	NM_002576.4	142	tAc/tGc																																																																															
EED	8726	MSKCC	GRCh37	11	85975226	85975226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	211	417	0	ENST00000263360.6:c.647G>A	p.Arg216Gln	p.R216Q	ENST00000263360	NM_003797.3	216	cGa/cAa																																																																															
EED	8726	MSKCC	GRCh37	11	85988124	85988124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	45	555	0	ENST00000263360.6:c.1069G>A	p.Asp357Asn	p.D357N	ENST00000263360	NM_003797.3	357	Gat/Aat																																																																															
PGR	5241	MSKCC	GRCh37	11	100933432	100933432	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	360	666	0	ENST00000325455.5:c.1958C>A	p.Ala653Asp	p.A653D	ENST00000325455	NM_001202474.3	653	gCt/gAt																																																																															
ATM	472	MSKCC	GRCh37	11	108196243	108196243	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	100	406	0	ENST00000278616.4:c.6779T>C	p.Ile2260Thr	p.I2260T	ENST00000278616	NM_000051.3	2260	aTa/aCa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344723	118344723	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	109	523	0	ENST00000534358.1:c.2849T>C	p.Leu950Pro	p.L950P	ENST00000534358	NM_005933.3	950	cTt/cCt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376306	118376306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	445	785	2	ENST00000534358.1:c.9699G>T	p.Lys3233Asn	p.K3233N	ENST00000534358	NM_005933.3	3233	aaG/aaT																																																																															
KDM5A	5927	MSKCC	GRCh37	12	441088	441088	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	370	593	0	ENST00000399788.2:c.1670A>T	p.Gln557Leu	p.Q557L	ENST00000399788	NM_001042603.1	557	cAg/cTg																																																																															
RAD52	5893	MSKCC	GRCh37	12	1023137	1023137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	299	590	4	ENST00000358495.3:c.1118G>A	p.Ser373Asn	p.S373N	ENST00000358495	NM_134424.2	373	aGc/aAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18439865	18439865	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	65	357	0	ENST00000266497.5:c.761+2T>C		p.X254_splice	ENST00000266497		254																																																																																
PIK3C2G	5288	MSKCC	GRCh37	12	18446850	18446850	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	159	342	0	ENST00000266497.5:c.935A>G	p.Lys312Arg	p.K312R	ENST00000266497		312	aAa/aGa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641499	18641499	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	328	558	0	ENST00000266497.5:c.2498A>C	p.Lys833Thr	p.K833T	ENST00000266497		833	aAa/aCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	147	431	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398253	25398253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	294	503	0	ENST00000256078.4:c.66G>T	p.Gln22His	p.Q22H	ENST00000256078	NM_033360.2	22	caG/caT																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246324	46246324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	249	415	1	ENST00000334344.6:c.4418C>A	p.Ser1473Tyr	p.S1473Y	ENST00000334344	NM_152641.2	1473	tCt/tAt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246470	46246470	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	329	632	0	ENST00000334344.6:c.4564A>G	p.Thr1522Ala	p.T1522A	ENST00000334344	NM_152641.2	1522	Act/Gct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427014	49427014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	34	417	1	ENST00000301067.7:c.11474G>T	p.Arg3825Ile	p.R3825I	ENST00000301067	NM_003482.3	3825	aGa/aTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434244	49434244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	445	849	3	ENST00000301067.7:c.7309C>T	p.Pro2437Ser	p.P2437S	ENST00000301067	NM_003482.3	2437	Cca/Tca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434664	49434664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	248	465	0	ENST00000301067.7:c.6889C>T	p.Pro2297Ser	p.P2297S	ENST00000301067	NM_003482.3	2297	Cct/Tct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440420	49440420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	48	430	1	ENST00000301067.7:c.4390G>A	p.Val1464Ile	p.V1464I	ENST00000301067	NM_003482.3	1464	Gtc/Atc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446350	49446350	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	278	450	0	ENST00000301067.7:c.1255C>A	p.Leu419Ile	p.L419I	ENST00000301067	NM_003482.3	419	Cta/Ata																																																																															
GLI1	2735	MSKCC	GRCh37	12	57857520	57857520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	60	714	1	ENST00000228682.2:c.46C>T	p.Pro16Ser	p.P16S	ENST00000228682	NM_005269.2	16	Ccc/Tcc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856365	111856365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	67	127	0	ENST00000341259.2:c.416G>A	p.Arg139His	p.R139H	ENST00000341259	NM_005475.2	139	cGc/cAc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856529	111856529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	47	305	2	ENST00000341259.2:c.580G>A	p.Glu194Lys	p.E194K	ENST00000341259	NM_005475.2	194	Gag/Aag																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885484	111885484	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs925290350		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	408	632	1	ENST00000341259.2:c.1261C>T	p.Arg421Trp	p.R421W	ENST00000341259	NM_005475.2	421	Cgg/Tgg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112891154	112891154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	268	532	1	ENST00000351677.2:c.488G>A	p.Gly163Asp	p.G163D	ENST00000351677	NM_002834.3	163	gGc/gAc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112893854	112893854	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	216	463	0	ENST00000351677.2:c.743G>A	p.Trp248Ter	p.W248*	ENST00000351677	NM_002834.3	248	tGg/tAg																																																																															
POLE	5426	MSKCC	GRCh37	12	133220026	133220026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	218	563	0	ENST00000320574.5:c.4411C>T	p.Arg1471Cys	p.R1471C	ENST00000320574	NM_006231.2	1471	Cgc/Tgc																																																																															
POLE	5426	MSKCC	GRCh37	12	133244105	133244105	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	117	462	0	ENST00000320574.5:c.2303T>C	p.Phe768Ser	p.F768S	ENST00000320574	NM_006231.2	768	tTc/tCc																																																																															
POLE	5426	MSKCC	GRCh37	12	133252340	133252340	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	258	544	0	ENST00000320574.5:c.1087A>G	p.Asn363Asp	p.N363D	ENST00000320574	NM_006231.2	363	Aac/Gac																																																																															
POLE	5426	MSKCC	GRCh37	12	133257725	133257725	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	86	414	0	ENST00000320574.5:c.203C>A	p.Pro68His	p.P68H	ENST00000320574	NM_006231.2	68	cCt/cAt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28623788	28623788	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	291	541	0	ENST00000241453.7:c.866A>G	p.Asn289Ser	p.N289S	ENST00000241453	NM_004119.2	289	aAc/aGc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28963948	28963948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	305	579	0	ENST00000282397.4:c.1954G>A	p.Glu652Lys	p.E652K	ENST00000282397	NM_002019.4	652	Gaa/Aaa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32905116	32905116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	203	415	0	ENST00000380152.3:c.742G>A	p.Ala248Thr	p.A248T	ENST00000380152		248	Gct/Act																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912807	32912807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	536	857	5	ENST00000380152.3:c.4315G>A	p.Ala1439Thr	p.A1439T	ENST00000380152		1439	Gcc/Acc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913182	32913182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	472	945	0	ENST00000380152.3:c.4690G>A	p.Ala1564Thr	p.A1564T	ENST00000380152		1564	Gca/Aca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913215	32913215	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	425	970	1	ENST00000380152.3:c.4723G>T	p.Asp1575Tyr	p.D1575Y	ENST00000380152		1575	Gac/Tac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32915232	32915232	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	447	895	2	ENST00000380152.3:c.6740G>T	p.Ser2247Ile	p.S2247I	ENST00000380152		2247	aGt/aTt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929375	32929375	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	393	849	0	ENST00000380152.3:c.7385C>A	p.Ser2462Tyr	p.S2462Y	ENST00000380152		2462	tCc/tAc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41239736	41239736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	331	637	2	ENST00000379561.5:c.614G>A	p.Ser205Asn	p.S205N	ENST00000379561	NM_002015.3	205	aGc/aAc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41239785	41239785	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	313	640	0	ENST00000379561.5:c.565T>C	p.Trp189Arg	p.W189R	ENST00000379561	NM_002015.3	189	Tgg/Cgg																																																																															
RB1	5925	MSKCC	GRCh37	13	48881516	48881516	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	211	492	0	ENST00000267163.4:c.238A>T	p.Lys80Ter	p.K80*	ENST00000267163	NM_000321.2	80	Aaa/Taa																																																																															
RB1	5925	MSKCC	GRCh37	13	48941657	48941657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	187	390	1	ENST00000267163.4:c.967G>T	p.Glu323Ter	p.E323*	ENST00000267163	NM_000321.2	323	Gaa/Taa																																																																															
RB1	5925	MSKCC	GRCh37	13	48954342	48954342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	174	337	0	ENST00000267163.4:c.1463C>T	p.Ala488Val	p.A488V	ENST00000267163	NM_000321.2	488	gCg/gTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515220	103515220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	279	538	0	ENST00000355739.4:c.1721C>A	p.Ala574Asp	p.A574D	ENST00000355739	NM_000123.3	574	gCt/gAt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435130	110435130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	204	382	0	ENST00000375856.3:c.3271C>T	p.Pro1091Ser	p.P1091S	ENST00000375856	NM_003749.2	1091	Ccg/Tcg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435522	110435522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	107	209	1	ENST00000375856.3:c.2879C>T	p.Ser960Leu	p.S960L	ENST00000375856	NM_003749.2	960	tCa/tTa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437478	110437478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	224	438	0	ENST00000375856.3:c.923C>T	p.Ser308Leu	p.S308L	ENST00000375856	NM_003749.2	308	tCg/tTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560364	95560364	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	246	504	0	ENST00000343455.3:c.5225A>G	p.Asn1742Ser	p.N1742S	ENST00000343455	NM_177438.2	1742	aAc/aGc																																																																															
AKT1	207	MSKCC	GRCh37	14	105240286	105240286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	187	564	2	ENST00000349310.3:c.665G>A	p.Arg222His	p.R222H	ENST00000349310	NM_001014432.1	222	cGc/cAc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246530	105246530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	103	511	0	ENST00000349310.3:c.70C>T	p.Pro24Ser	p.P24S	ENST00000349310	NM_001014432.1	24	Cca/Tca																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023446	33023446	+	stop_lost	Nonstop_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	498	900	0	ENST00000300177.4:c.555A>C	p.Ter185TyrextTer29	p.*185Yext*29	ENST00000300177	NM_001191322.1	185	taA/taC																																																																															
MGA	23269	MSKCC	GRCh37	15	42003414	42003414	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1269317379		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	409	845	2	ENST00000219905.7:c.2951G>A	p.Arg984His	p.R984H	ENST00000219905	NM_001164273.1	984	cGc/cAc																																																																															
B2M	567	MSKCC	GRCh37	15	45003779	45003779	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	115	508	0	ENST00000558401.1:c.35T>C	p.Leu12Pro	p.L12P	ENST00000558401	NM_004048.2	12	cTa/cCa																																																																															
B2M	567	MSKCC	GRCh37	15	45003799	45003799	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	83	459	0	ENST00000558401.1:c.55G>T	p.Glu19Ter	p.E19*	ENST00000558401	NM_004048.2	19	Gag/Tag																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457244	67457244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	48	368	0	ENST00000327367.4:c.218G>A	p.Gly73Asp	p.G73D	ENST00000327367	NM_005902.3	73	gGc/gAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347908	347908	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146189916		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	316	784	1	ENST00000262320.3:c.1598G>A	p.Arg533Gln	p.R533Q	ENST00000262320	NM_003502.3	533	cGa/cAa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2221577	2221577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	308	545	2	ENST00000326181.6:c.446C>T	p.Thr149Met	p.T149M	ENST00000326181	NM_032271.2	149	aCg/aTg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225320	2225320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	40	596	0	ENST00000326181.6:c.1405C>A	p.Leu469Met	p.L469M	ENST00000326181	NM_032271.2	469	Ctg/Atg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779019	3779019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	20	344	0	ENST00000262367.5:c.6029G>A	p.Gly2010Glu	p.G2010E	ENST00000262367	NM_004380.2	2010	gGg/gAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786682	3786682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	432	704	6	ENST00000262367.5:c.4529C>T	p.Ala1510Val	p.A1510V	ENST00000262367	NM_004380.2	1510	gCg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820732	3820732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	343	610	1	ENST00000262367.5:c.2719C>T	p.Pro907Ser	p.P907S	ENST00000262367	NM_004380.2	907	Ccc/Tcc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857200	9857200	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	400	781	0	ENST00000330684.3:c.4201C>A	p.Leu1401Ile	p.L1401I	ENST00000330684	NM_001134407.1	1401	Ctt/Att																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641750	23641750	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	193	479	0	ENST00000261584.4:c.1725G>A	p.Trp575Ter	p.W575*	ENST00000261584	NM_024675.3	575	tgG/tgA																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646683	23646683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	209	473	0	ENST00000261584.4:c.1184C>A	p.Ser395Tyr	p.S395Y	ENST00000261584	NM_024675.3	395	tCt/tAt																																																																															
NUP93	9688	MSKCC	GRCh37	16	56865888	56865888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	454	786	2	ENST00000308159.5:c.1220C>T	p.Ala407Val	p.A407V	ENST00000308159	NM_014669.4	407	gCg/gTg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56875638	56875638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	73	635	0	ENST00000308159.5:c.2242G>A	p.Val748Met	p.V748M	ENST00000308159	NM_014669.4	748	Gtg/Atg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645489	67645489	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	208	396	2	ENST00000264010.4:c.754C>A	p.Pro252Thr	p.P252T	ENST00000264010	NM_006565.3	252	Cca/Aca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828777	72828777	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	453	890	0	ENST00000268489.5:c.7804A>G	p.Thr2602Ala	p.T2602A	ENST00000268489	NM_006885.3	2602	Act/Gct																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828915	72828915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	487	896	2	ENST00000268489.5:c.7666G>A	p.Ala2556Thr	p.A2556T	ENST00000268489	NM_006885.3	2556	Gcg/Acg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829200	72829200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	333	919	2	ENST00000268489.5:c.7381G>A	p.Glu2461Lys	p.E2461K	ENST00000268489	NM_006885.3	2461	Gag/Aag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81819752	81819752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	412	716	0	ENST00000359376.3:c.158C>T	p.Ala53Val	p.A53V	ENST00000359376	NM_002661.3	53	gCc/gTc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81991597	81991597	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1284	76	834	0	ENST00000359376.3:c.3792C>A	p.Tyr1264Ter	p.Y1264*	ENST00000359376	NM_002661.3	1264	taC/taA																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347863	89347863	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	293	725	0	ENST00000301030.4:c.5087A>G	p.Asp1696Gly	p.D1696G	ENST00000301030	NM_001256183.1	1696	gAc/gGc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348610	89348610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1170	297	973	2	ENST00000301030.4:c.4340C>A	p.Pro1447His	p.P1447H	ENST00000301030	NM_001256183.1	1447	cCt/cAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357447	89357447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	292	708	2	ENST00000301030.4:c.371C>T	p.Thr124Met	p.T124M	ENST00000301030	NM_001256183.1	124	aCg/aTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89807231	89807231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	376	653	0	ENST00000389301.3:c.3809C>T	p.Ser1270Leu	p.S1270L	ENST00000389301	NM_000135.2	1270	tCg/tTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89809275	89809275	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs545742908		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	351	621	3	ENST00000389301.3:c.3698C>T	p.Ala1233Val	p.A1233V	ENST00000389301	NM_000135.2	1233	gCg/gTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836633	89836633	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	271	540	0	ENST00000389301.3:c.2257A>G	p.Met753Val	p.M753V	ENST00000389301	NM_000135.2	753	Atg/Gtg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89839685	89839685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	277	594	1	ENST00000389301.3:c.2008C>T	p.Arg670Cys	p.R670C	ENST00000389301	NM_000135.2	670	Cgt/Tgt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89851371	89851371	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	117	430	0	ENST00000389301.3:c.1361C>T	p.Ala454Val	p.A454V	ENST00000389301	NM_000135.2	454	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	213	436	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	212	496	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579400	7579400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	109	476	0	ENST00000269305.4:c.287C>A	p.Ser96Tyr	p.S96Y	ENST00000269305	NM_001126112.2	96	tCt/tAt																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7980034	7980034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	306	527	0	ENST00000319144.4:c.1303G>A	p.Val435Ile	p.V435I	ENST00000319144	NM_001139.2	435	Gtc/Atc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15964969	15964969	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	276	618	0	ENST00000268712.3:c.5627G>T	p.Arg1876Ile	p.R1876I	ENST00000268712	NM_006311.3	1876	aGa/aTa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968823	15968823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	163	506	0	ENST00000268712.3:c.4927G>A	p.Gly1643Ser	p.G1643S	ENST00000268712	NM_006311.3	1643	Ggt/Agt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974781	15974781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	50	525	0	ENST00000268712.3:c.4094G>A	p.Arg1365Gln	p.R1365Q	ENST00000268712	NM_006311.3	1365	cGg/cAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004727	16004727	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	303	648	0	ENST00000268712.3:c.2527G>T	p.Glu843Ter	p.E843*	ENST00000268712	NM_006311.3	843	Gaa/Taa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131282	17131282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	316	592	0	ENST00000285071.4:c.170G>A	p.Arg57Gln	p.R57Q	ENST00000285071	NM_144997.5	57	cGg/cAg																																																																															
NF1	4763	MSKCC	GRCh37	17	29541468	29541468	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	16	131	0	ENST00000358273.4:c.1393-1G>A		p.X465_splice	ENST00000358273	NM_001042492.2	465																																																																																
NF1	4763	MSKCC	GRCh37	17	29653140	29653140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	261	415	0	ENST00000358273.4:c.5138G>A	p.Gly1713Glu	p.G1713E	ENST00000358273	NM_001042492.2	1713	gGg/gAg																																																																															
RARA	5914	MSKCC	GRCh37	17	38511667	38511667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	220	478	2	ENST00000254066.5:c.1165G>A	p.Ala389Thr	p.A389T	ENST00000254066	NM_000964.3	389	Gcc/Acc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245300	41245300	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	266	486	1	ENST00000357654.3:c.2248C>A	p.Leu750Ile	p.L750I	ENST00000357654	NM_007294.3	750	Ctc/Atc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696419	47696419	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	45	511	0	ENST00000347630.2:c.404A>C	p.Lys135Thr	p.K135T	ENST00000347630	NM_001007230.1	135	aAa/aCa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437609	56437609	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	41	431	0	ENST00000407977.2:c.853C>A	p.Leu285Ile	p.L285I	ENST00000407977		285	Cta/Ata																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58711228	58711228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	376	639	0	ENST00000305921.3:c.716C>A	p.Ser239Tyr	p.S239Y	ENST00000305921	NM_003620.3	239	tCt/tAt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59924463	59924463	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	221	508	0	ENST00000259008.2:c.626A>G	p.Lys209Arg	p.K209R	ENST00000259008	NM_032043.2	209	aAa/aGa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59934512	59934512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	387	656	0	ENST00000259008.2:c.286A>G	p.Thr96Ala	p.T96A	ENST00000259008	NM_032043.2	96	Aca/Gca																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59937169	59937169	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	277	506	0	ENST00000259008.2:c.193C>G	p.Gln65Glu	p.Q65E	ENST00000259008	NM_032043.2	65	Caa/Gaa																																																																															
CD79B	974	MSKCC	GRCh37	17	62006627	62006627	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1063625		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	259	581	0	ENST00000392795.3:c.652G>A	p.Glu218Lys	p.E218K	ENST00000392795	NM_001039933.1	218	Gaa/Aaa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533760	63533760	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764640447		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	230	470	1	ENST00000307078.5:c.1394G>A	p.Arg465His	p.R465H	ENST00000307078	NM_004655.3	465	cGc/cAc																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66511551	66511551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	154	248	0	ENST00000358598.2:c.11G>A	p.Gly4Asp	p.G4D	ENST00000358598	NM_212471.2	4	gGc/gAc																																																																															
YES1	7525	MSKCC	GRCh37	18	724456	724456	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	213	520	0	ENST00000314574.4:c.1600G>T	p.Glu534Ter	p.E534*	ENST00000314574	NM_005433.3	534	Gag/Tag																																																																															
MALT1	10892	MSKCC	GRCh37	18	56400748	56400748	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	399	802	1	ENST00000348428.3:c.1342T>G	p.Leu448Val	p.L448V	ENST00000348428	NM_006785.3	448	Ttg/Gtg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216994	2216994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	310	557	1	ENST00000398665.3:c.2449C>T	p.Pro817Ser	p.P817S	ENST00000398665	NM_032482.2	817	Ccc/Tcc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2223431	2223431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	253	469	0	ENST00000398665.3:c.3542C>T	p.Ser1181Phe	p.S1181F	ENST00000398665	NM_032482.2	1181	tCc/tTc																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110203	3110203	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147528229		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	276	595	0	ENST00000078429.4:c.193G>A	p.Ala65Thr	p.A65T	ENST00000078429	NM_002067.2	65	Gcc/Acc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4117445	4117445	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	65	293	0	ENST00000262948.5:c.275G>T	p.Arg92Ile	p.R92I	ENST00000262948	NM_030662.3	92	aGa/aTa																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4123817	4123817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	269	406	2	ENST00000262948.5:c.56C>T	p.Ala19Val	p.A19V	ENST00000262948	NM_030662.3	19	gCc/gTc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5215601	5215601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	87	417	0	ENST00000357368.4:c.4102C>T	p.Leu1368Phe	p.L1368F	ENST00000357368	NM_002850.3	1368	Ctt/Ttt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221131	5221131	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201447856		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	34	586	1	ENST00000357368.4:c.3335C>T	p.Thr1112Met	p.T1112M	ENST00000357368	NM_002850.3	1112	aCg/aTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7141827	7141827	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	123	473	2	ENST00000302850.5:c.2543C>T	p.Ala848Val	p.A848V	ENST00000302850	NM_000208.2	848	gCc/gTc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10249230	10249230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	209	538	0	ENST00000340748.4:c.3952G>A	p.Ala1318Thr	p.A1318T	ENST00000340748		1318	Gcg/Acg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10259684	10259684	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	213	393	0	ENST00000340748.4:c.2548G>T	p.Asp850Tyr	p.D850Y	ENST00000340748		850	Gat/Tat																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10260191	10260191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	48	531	0	ENST00000340748.4:c.2476T>C	p.Ser826Pro	p.S826P	ENST00000340748		826	Tca/Cca																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11094867	11094867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	149	607	0	ENST00000344626.4:c.40C>T	p.Pro14Ser	p.P14S	ENST00000344626	NM_003072.3	14	Cca/Tca																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098566	11098566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	284	571	3	ENST00000344626.4:c.1084G>A	p.Asp362Asn	p.D362N	ENST00000344626	NM_003072.3	362	Gac/Aac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101970	11101970	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	248	520	1	ENST00000344626.4:c.1390C>T	p.Gln464Ter	p.Q464*	ENST00000344626	NM_003072.3	464	Cag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121068	11121068	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	57	732	0	ENST00000344626.4:c.2135A>G	p.Gln712Arg	p.Q712R	ENST00000344626	NM_003072.3	712	cAa/cGa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11168978	11168978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	259	598	0	ENST00000344626.4:c.4472G>A	p.Arg1491Gln	p.R1491Q	ENST00000344626	NM_003072.3	1491	cGa/cAa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15273295	15273295	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	244	558	0	ENST00000263388.2:c.5894A>C	p.Lys1965Thr	p.K1965T	ENST00000263388	NM_000435.2	1965	aAg/aCg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276687	15276687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	249	601	2	ENST00000263388.2:c.5578G>A	p.Asp1860Asn	p.D1860N	ENST00000263388	NM_000435.2	1860	Gat/Aat																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299969	15299969	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	43	560	0	ENST00000263388.2:c.1209G>T	p.Glu403Asp	p.E403D	ENST00000263388	NM_000435.2	403	gaG/gaT																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366309	15366309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	196	516	1	ENST00000263377.2:c.1846C>T	p.Arg616Trp	p.R616W	ENST00000263377	NM_058243.2	616	Cgg/Tgg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17952321	17952321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	238	494	1	ENST00000458235.1:c.1019C>T	p.Ser340Leu	p.S340L	ENST00000458235	NM_000215.3	340	tCg/tTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955187	17955187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	294	620	2	ENST00000458235.1:c.40C>T	p.Arg14Cys	p.R14C	ENST00000458235	NM_000215.3	14	Cgt/Tgt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273283	18273283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	56	602	2	ENST00000222254.8:c.1076G>A	p.Ser359Asn	p.S359N	ENST00000222254	NM_005027.3	359	aGc/aAc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257967	19257967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	48	572	0	ENST00000162023.5:c.419C>A	p.Pro140Gln	p.P140Q	ENST00000162023		140	cCa/cAa																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308069	30308069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	301	470	1	ENST00000262643.3:c.206C>T	p.Ala69Val	p.A69V	ENST00000262643	NM_001238.2	69	gCa/gTa																																																																															
AXL	558	MSKCC	GRCh37	19	41727935	41727935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	258	526	0	ENST00000301178.4:c.560G>A	p.Gly187Asp	p.G187D	ENST00000301178	NM_021913.4	187	gGc/gAc																																																																															
AXL	558	MSKCC	GRCh37	19	41737100	41737100	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	301	601	0	ENST00000301178.4:c.680A>C	p.Gln227Pro	p.Q227P	ENST00000301178	NM_021913.4	227	cAg/cCg																																																																															
CIC	23152	MSKCC	GRCh37	19	42793393	42793393	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	77	351	1	ENST00000575354.2:c.1195G>T	p.Gly399Ter	p.G399*	ENST00000575354	NM_015125.3	399	Gga/Tga																																																																															
CIC	23152	MSKCC	GRCh37	19	42795033	42795033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	295	529	0	ENST00000575354.2:c.2113G>A	p.Ala705Thr	p.A705T	ENST00000575354	NM_015125.3	705	Gca/Aca																																																																															
CIC	23152	MSKCC	GRCh37	19	42797266	42797266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	183	443	0	ENST00000575354.2:c.3628C>A	p.Pro1210Thr	p.P1210T	ENST00000575354	NM_015125.3	1210	Cct/Act																																																																															
CIC	23152	MSKCC	GRCh37	19	42798364	42798364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	266	539	1	ENST00000575354.2:c.4235G>A	p.Arg1412His	p.R1412H	ENST00000575354	NM_015125.3	1412	cGc/cAc																																																																															
CIC	23152	MSKCC	GRCh37	19	42798990	42798990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	60	506	0	ENST00000575354.2:c.4474G>A	p.Ala1492Thr	p.A1492T	ENST00000575354	NM_015125.3	1492	Gcc/Acc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45872188	45872188	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	293	524	0	ENST00000391945.4:c.246G>T	p.Lys82Asn	p.K82N	ENST00000391945	NM_000400.3	82	aaG/aaT																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906383	50906383	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	440	641	0	ENST00000440232.2:c.1044G>T	p.Glu348Asp	p.E348D	ENST00000440232	NM_002691.3	348	gaG/gaT																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918105	50918105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	142	693	2	ENST00000440232.2:c.2422C>T	p.Arg808Cys	p.R808C	ENST00000440232	NM_002691.3	808	Cgc/Tgc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714597	52714597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	226	635	0	ENST00000322088.6:c.355C>T	p.His119Tyr	p.H119Y	ENST00000322088	NM_014225.5	119	Cac/Tac																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520162	9520162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	308	520	0	ENST00000353224.5:c.2107G>A	p.Ala703Thr	p.A703T	ENST00000353224	NM_177990.2	703	Gca/Aca																																																																															
ASXL1	171023	MSKCC	GRCh37	20	30954254	30954254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	54	576	1	ENST00000375687.4:c.125G>A	p.Gly42Glu	p.G42E	ENST00000375687	NM_015338.5	42	gGa/gAa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023949	31023949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	257	575	0	ENST00000375687.4:c.3434G>A	p.Gly1145Asp	p.G1145D	ENST00000375687	NM_015338.5	1145	gGc/gAc																																																																															
SRC	6714	MSKCC	GRCh37	20	36030050	36030050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	253	553	2	ENST00000358208.4:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000358208		362	cGg/cAg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39746809	39746809	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	149	349	1	ENST00000361337.2:c.1823C>T	p.Pro608Leu	p.P608L	ENST00000361337	NM_003286.2	608	cCg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419951	41419951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	59	620	1	ENST00000373198.4:c.370G>A	p.Val124Met	p.V124M	ENST00000373198	NM_133170.3	124	Gtg/Atg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41420025	41420025	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	270	623	0	ENST00000373198.4:c.296A>G	p.Asp99Gly	p.D99G	ENST00000373198	NM_133170.3	99	gAc/gGc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264640	46264640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	101	579	2	ENST00000371998.3:c.1510C>T	p.His504Tyr	p.H504Y	ENST00000371998		504	Cac/Tac																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46266528	46266528	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	37	592	1	ENST00000371998.3:c.2512+1G>A		p.X838_splice	ENST00000371998		838																																																																																
NCOA3	8202	MSKCC	GRCh37	20	46268465	46268465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	353	811	0	ENST00000371998.3:c.2852G>T	p.Arg951Ile	p.R951I	ENST00000371998		951	aGa/aTa																																																																															
AURKA	6790	MSKCC	GRCh37	20	54948603	54948603	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	178	367	0	ENST00000312783.6:c.715G>T	p.Glu239Ter	p.E239*	ENST00000312783	NM_198436.1	239	Gaa/Taa																																																																															
AURKA	6790	MSKCC	GRCh37	20	54958084	54958084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	101	421	0	ENST00000312783.6:c.523G>A	p.Glu175Lys	p.E175K	ENST00000312783	NM_198436.1	175	Gag/Aag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57480483	57480483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	258	434	0	ENST00000371085.3:c.478C>T	p.Arg160Cys	p.R160C	ENST00000371085	NM_000516.4	160	Cgt/Tgt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164781	36164781	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	44	630	0	ENST00000300305.3:c.1094G>T	p.Gly365Val	p.G365V	ENST00000300305		365	gGc/gTc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42839812	42839812	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	188	334	0	ENST00000398585.3:c.1427G>A	p.Gly476Asp	p.G476D	ENST00000398585	NM_001135099.1	476	gGt/gAt																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866328	42866328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150389990		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	32	367	2	ENST00000398585.3:c.304G>A	p.Val102Ile	p.V102I	ENST00000398585	NM_001135099.1	102	Gtc/Atc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44520566	44520566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	308	445	1	ENST00000291552.4:c.196C>T	p.Arg66Cys	p.R66C	ENST00000291552	NM_006758.2	66	Cgc/Tgc																																																																															
NF2	4771	MSKCC	GRCh37	22	30064376	30064376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	345	668	0	ENST00000338641.4:c.940G>A	p.Asp314Asn	p.D314N	ENST00000338641	NM_000268.3	314	Gat/Aat																																																																															
EP300	2033	MSKCC	GRCh37	22	41547987	41547987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	167	659	1	ENST00000263253.7:c.2968G>A	p.Ala990Thr	p.A990T	ENST00000263253	NM_001429.3	990	Gca/Aca																																																																															
EP300	2033	MSKCC	GRCh37	22	41572256	41572256	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	237	376	0	ENST00000263253.7:c.4785C>A	p.Phe1595Leu	p.F1595L	ENST00000263253	NM_001429.3	1595	ttC/ttA																																																																															
EP300	2033	MSKCC	GRCh37	22	41574502	41574502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	231	546	1	ENST00000263253.7:c.6787C>T	p.Arg2263Ter	p.R2263*	ENST00000263253	NM_001429.3	2263	Cga/Tga																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1331455	1331455	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	179	660	0	ENST00000381566.1:c.73G>T	p.Gly25Ter	p.G25*	ENST00000381566		25	Gga/Tga																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938543	44938543	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	57	285	0	ENST00000377967.4:c.3091A>G	p.Thr1031Ala	p.T1031A	ENST00000377967	NM_021140.2	1031	Aca/Gca																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045463	47045463	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	91	274	1	ENST00000329236.7:c.2197-1G>T		p.X733_splice	ENST00000329236	NM_001204466.1	733																																																																																
ARAF	369	MSKCC	GRCh37	X	47424197	47424197	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	287	285	0	ENST00000377045.4:c.202C>T	p.Arg68Ter	p.R68*	ENST00000377045	NM_001654.4	68	Cga/Tga																																																																															
ARAF	369	MSKCC	GRCh37	X	47430276	47430276	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	51	383	0	ENST00000377045.4:c.1552-1G>T		p.X518_splice	ENST00000377045	NM_001654.4	518																																																																																
GATA1	2623	MSKCC	GRCh37	X	48651642	48651642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	343	379	1	ENST00000376670.3:c.808C>T	p.Arg270Trp	p.R270W	ENST00000376670	NM_002049.3	270	Cgg/Tgg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245265	53245265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	61	360	1	ENST00000375401.3:c.772C>T	p.Arg258Trp	p.R258W	ENST00000375401	NM_004187.3	258	Cgg/Tgg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53246450	53246450	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	48	312	0	ENST00000375401.3:c.532A>G	p.Thr178Ala	p.T178A	ENST00000375401	NM_004187.3	178	Aca/Gca																																																																															
AMER1	139285	MSKCC	GRCh37	X	63409822	63409822	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	102	356	0	ENST00000330258.3:c.3345G>T	p.Glu1115Asp	p.E1115D	ENST00000330258	NM_152424.3	1115	gaG/gaT																																																																															
AR	367	MSKCC	GRCh37	X	66765579	66765579	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	103	397	0	ENST00000374690.3:c.591G>T	p.Gln197His	p.Q197H	ENST00000374690	NM_000044.3	197	caG/caT																																																																															
MED12	9968	MSKCC	GRCh37	X	70356811	70356811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	89	379	0	ENST00000374080.3:c.5483C>T	p.Ser1828Phe	p.S1828F	ENST00000374080		1828	tCt/tTt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123181221	123181221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	183	347	0	ENST00000218089.9:c.685G>A	p.Ala229Thr	p.A229T	ENST00000218089	NM_001042749.1	229	Gct/Act																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197867	123197867	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	656	335	0	ENST00000218089.9:c.1991A>C	p.Lys664Thr	p.K664T	ENST00000218089	NM_001042749.1	664	aAa/aCa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123211868	123211868	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	638	390	1	ENST00000218089.9:c.2735A>C	p.Lys912Thr	p.K912T	ENST00000218089	NM_001042749.1	912	aAa/aCa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39647436	39647437	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	247	563	0	ENST00000262039.4:c.2613dup	p.Ala872CysfsTer77	p.A872Cfs*77	ENST00000262039	NM_002647.2	870	ctt/cTtt																																																																															
KIT	3815	MSKCC	GRCh37	4	55603379	55603380	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	282	640	0	ENST00000288135.5:c.2740dup	p.Arg914LysfsTer12	p.R914Kfs*12	ENST00000288135	NM_000222.2	912	cta/ctAa																																																																															
ATR	545	MSKCC	GRCh37	3	142185232	142185232	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	341	607	0	ENST00000350721.4:c.6831del	p.His2277GlnfsTer38	p.H2277Qfs*38	ENST00000350721	NM_001184.3	2277	caT/ca																																																																															
NBN	4683	MSKCC	GRCh37	8	90965660	90965660	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	264	537	0	ENST00000265433.3:c.1657del	p.Met553TrpfsTer6	p.M553Wfs*6	ENST00000265433	NM_002485.4	553	Atg/tg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	59	240	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	252	463	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584560	48584560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	278	420	0	ENST00000342988.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000342988	NM_005359.5	245	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520017		P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	316	580	2	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610380	10610380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	339	509	1	ENST00000171111.5:c.330G>T	p.Met110Ile	p.M110I	ENST00000171111	NM_203500.1	110	atG/atT																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458746	120458746	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	96	463	0	ENST00000256646.2:c.6599C>G	p.Ser2200Cys	p.S2200C	ENST00000256646	NM_024408.3	2200	tCt/tGt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436887	52436887	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	48	377	0	ENST00000460680.1:c.1891G>C	p.Glu631Gln	p.E631Q	ENST00000460680	NM_004656.3	631	Gag/Cag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670760	134670760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	115	407	0	ENST00000398015.3:c.671C>A	p.Thr224Lys	p.T224K	ENST00000398015	NM_004441.4	224	aCa/aAa																																																																															
TP63	8626	MSKCC	GRCh37	3	189612221	189612221	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	286	407	0	ENST00000264731.3:c.1973G>A	p.Trp658Ter	p.W658*	ENST00000264731	NM_003722.4	658	tGg/tAg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38953574	38953574	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	165	354	0	ENST00000357387.3:c.2779C>G	p.Leu927Val	p.L927V	ENST00000357387	NM_152756.3	927	Ctt/Gtt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151917617	151917617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	40	290	0	ENST00000262189.6:c.3703G>A	p.Asp1235Asn	p.D1235N	ENST00000262189	NM_170606.2	1235	Gat/Aat																																																																															
MYC	4609	MSKCC	GRCh37	8	128752935	128752935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	94	409	0	ENST00000377970.2:c.1096G>A	p.Glu366Lys	p.E366K	ENST00000377970	NM_002467.4	366	Gag/Aag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114159	115114159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	173	633	0	ENST00000257566.3:c.1058C>T	p.Ser353Phe	p.S353F	ENST00000257566	NM_016569.3	353	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578456	7578482	+	inframe_deletion	In_Frame_Del	DEL	GCGGACGCGGGTGCCGGGCGGGGGTGT	GCGGACGCGGGTGCCGGGCGGGGGTGT	-			P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	312	491	0	ENST00000269305.4:c.448_474del	p.Thr150_Arg158del	p.T150_R158del	ENST00000269305	NM_001126112.2	150	ACACCCCCGCCCGGCACCCGCGTCCGC/-																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0011308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	1523	350	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149495360	149495360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs114435947		P-0011308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	58	283	0	ENST00000261799.4:c.3287C>T	p.Ala1096Val	p.A1096V	ENST00000261799	NM_002609.3	1096	gCg/gTg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73347943	73347943	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	53	247	0	ENST00000377767.4:c.1118T>C	p.Phe373Ser	p.F373S	ENST00000377767	NM_014953.3	373	tTt/tCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578470	+	protein_altering_variant	In_Frame_Ins	INS	-	-	GGG			P-0011308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	128	347	0	ENST00000269305.4:c.460_461insCCC	p.Gly154delinsAlaArg	p.G154delinsAR	ENST00000269305	NM_001126112.2	154	ggc/gCCCgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	protein_altering_variant	In_Frame_Ins	INS	-	-	GCACAC			P-0012196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	23	513	0	ENST00000275493.2:c.2308_2309insGCACAC	p.Asp770delinsGlyThrHis	p.D770delinsGTH	ENST00000275493	NM_005228.3	770	gac/gGCACACac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	187	296	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TERT	7015	MSKCC	GRCh37	5	1294665	1294665	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	32	102	0	ENST00000310581.5:c.336del	p.Glu113ArgfsTer15	p.E113Rfs*15	ENST00000310581	NM_198253.2	112	ccC/cc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	170	642	0	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742463	17742463	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	145	624	1	ENST00000250003.3:c.650delC	p.Pro217ArgfsTer33	p.P217Rfs*33	ENST00000250003	NM_002478.4	215	ggC/gg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964077	28964077	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	150	550	0	ENST00000282397.4:c.1825del	p.Met609TrpfsTer16	p.M609Wfs*16	ENST00000282397	NM_002019.4	609	Atg/tg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	152	422	2	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100998	41100998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	142	417	1	ENST00000373198.4:c.1358G>A	p.Arg453His	p.R453H	ENST00000373198	NM_133170.3	453	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112176206	112176206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	134	502	1	ENST00000257430.4:c.4915C>T	p.Pro1639Ser	p.P1639S	ENST00000257430	NM_000038.5	1639	Cca/Tca																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149516594	149516594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150173975		P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	203	546	1	ENST00000261799.4:c.17C>T	p.Ala6Val	p.A6V	ENST00000261799	NM_002609.3	6	gCg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101690	27101690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	133	446	2	ENST00000324856.7:c.4972C>T	p.Arg1658Trp	p.R1658W	ENST00000324856	NM_006015.4	1658	Cgg/Tgg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99203983	99203983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	107	406	0	ENST00000074304.5:c.2846G>A	p.Arg949His	p.R949H	ENST00000074304	NM_001134224.1	949	cGc/cAc																																																																															
TP63	8626	MSKCC	GRCh37	3	189587119	189587119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	163	400	1	ENST00000264731.3:c.1136G>A	p.Arg379His	p.R379H	ENST00000264731	NM_003722.4	379	cGt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332496	153332496	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138477494		P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	176	608	0	ENST00000281708.4:c.460G>A	p.Val154Ile	p.V154I	ENST00000281708	NM_033632.3	154	Gtt/Att																																																																															
APC	324	MSKCC	GRCh37	5	112179453	112179453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1015	198	659	0	ENST00000257430.4:c.8162G>A	p.Arg2721His	p.R2721H	ENST00000257430	NM_000038.5	2721	cGc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240806	55240806	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	80	332	0	ENST00000275493.2:c.2050C>T	p.Gln684Ter	p.Q684*	ENST00000275493	NM_005228.3	684	Cag/Tag																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38287297	38287297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	178	630	0	ENST00000425967.3:c.360G>T	p.Glu120Asp	p.E120D	ENST00000425967	NM_001174067.1	120	gaG/gaT																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123324952	123324952	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	152	556	0	ENST00000358487.5:c.376G>T	p.Asp126Tyr	p.D126Y	ENST00000358487	NM_000141.4	126	Gat/Tat																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94211942	94211942	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	129	435	0	ENST00000323929.3:c.503T>C	p.Leu168Ser	p.L168S	ENST00000323929	NM_005591.3	168	tTg/tCg																																																																															
ATM	472	MSKCC	GRCh37	11	108224507	108224507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	116	371	0	ENST00000278616.4:c.8686C>T	p.Gln2896Ter	p.Q2896*	ENST00000278616	NM_000051.3	2896	Cag/Tag																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570038	95570038	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	56	498	0	ENST00000343455.3:c.3695G>C	p.Ser1232Thr	p.S1232T	ENST00000343455	NM_177438.2	1232	aGc/aCc																																																																															
MGA	23269	MSKCC	GRCh37	15	42040904	42040904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1114	211	711	0	ENST00000219905.7:c.5282G>A	p.Arg1761Gln	p.R1761Q	ENST00000219905	NM_001164273.1	1761	cGa/cAa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2126085	2126085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	199	709	1	ENST00000219476.3:c.2656G>A	p.Val886Met	p.V886M	ENST00000219476	NM_000548.3	886	Gtg/Atg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89816139	89816139	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	159	580	0	ENST00000389301.3:c.3238C>T	p.Arg1080Trp	p.R1080W	ENST00000389301	NM_000135.2	1080	Cgg/Tgg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89857923	89857923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	134	405	2	ENST00000389301.3:c.1247C>T	p.Ala416Val	p.A416V	ENST00000389301	NM_000135.2	416	gCc/gTc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984839	11984839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	105	258	0	ENST00000353533.5:c.385G>A	p.Ala129Thr	p.A129T	ENST00000353533	NM_003010.3	129	Gca/Aca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298797	15298797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	144	417	0	ENST00000263388.2:c.1501G>A	p.Gly501Ser	p.G501S	ENST00000263388	NM_000435.2	501	Ggc/Agc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299827	15299827	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	175	489	0	ENST00000263388.2:c.1351G>T	p.Gly451Cys	p.G451C	ENST00000263388	NM_000435.2	451	Ggc/Tgc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942128	17942128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	143	481	1	ENST00000458235.1:c.2887G>A	p.Val963Ile	p.V963I	ENST00000458235	NM_000215.3	963	Gtc/Atc																																																																															
AXL	558	MSKCC	GRCh37	19	41762385	41762385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	61	596	1	ENST00000301178.4:c.2065G>A	p.Ala689Thr	p.A689T	ENST00000301178	NM_021913.4	689	Gcg/Acg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918548	44918548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	204	616	0	ENST00000377967.4:c.1031C>T	p.Ala344Val	p.A344V	ENST00000377967	NM_021140.2	344	gCt/gTt																																																																															
ARAF	369	MSKCC	GRCh37	X	47428212	47428212	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	211	680	0	ENST00000377045.4:c.1172A>G	p.Tyr391Cys	p.Y391C	ENST00000377045	NM_001654.4	391	tAc/tGc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403254	213403254	+	frameshift_variant,start_lost	Frame_Shift_Del	DEL	T	T	-			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	145	550	0	ENST00000342788.4:c.1delA	p.Met1?	p.M1?	ENST00000342788	NM_005235.2	1	Atg/tg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686961	37686962	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	158	516	0	ENST00000447079.4:c.3871dup	p.Gln1291ProfsTer19	p.Q1291Pfs*19	ENST00000447079	NM_015083.1	1289	gcc/gCcc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907261	32907263	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	121	431	0	ENST00000380152.3:c.1650_1652del	p.Glu550del	p.E550del	ENST00000380152		549	aAGGag/aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524589	187524589	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	144	372	0	ENST00000441802.2:c.11091del	p.Phe3697LeufsTer2	p.F3697Lfs*2	ENST00000441802	NM_005245.3	3697	ttT/tt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11924269	11924269	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	28	92	0	ENST00000353533.5:c.69del	p.Val24Ter	p.V24*	ENST00000353533	NM_003010.3	22	ggC/gg																																																																															
KIT	3815	MSKCC	GRCh37	4	55561901	55561901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	113	381	0	ENST00000288135.5:c.291del	p.Cys97Ter	p.C97*	ENST00000288135	NM_000222.2	97	tgC/tg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16265339	16265341	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	147	577	0	ENST00000375759.3:c.10835_10837del	p.Ile3612del	p.I3612del	ENST00000375759	NM_015001.2	3611	ATC/-																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0012406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	24	494	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376124	118376124	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	74	510	0	ENST00000534358.1:c.9517C>T	p.Gln3173Ter	p.Q3173*	ENST00000534358	NM_005933.3	3173	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579359	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TTT			P-0012406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	77	566	0	ENST00000269305.4:c.328_329insAAA	p.Arg110delinsGlnSer	p.R110delinsQS	ENST00000269305	NM_001126112.2	110	cgt/cAAAgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0013342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	137	575	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259442	55259442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	99	421	1	ENST00000275493.2:c.2500G>T	p.Val834Leu	p.V834L	ENST00000275493	NM_005228.3	834	Gtg/Ttg																																																																															
KIT	3815	MSKCC	GRCh37	4	55575597	55575606	+	frameshift_variant	Frame_Shift_Del	DEL	AGTGAACTTC	AGTGAACTTC	-			P-0013342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	100	567	0	ENST00000288135.5:c.1124_1133del	p.Ser375IlefsTer2	p.S375Ifs*2	ENST00000288135	NM_000222.2	375	AGTGAACTTCat/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	304	590	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029437	16029439	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0017812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	93	493	1	ENST00000268712.3:c.1591_1593delGAA	p.Glu531del	p.E531del	ENST00000268712	NM_006311.3	531	GAA/-																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964333	70964333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	89	357	0	ENST00000276594.2:c.1695G>A	p.Met565Ile	p.M565I	ENST00000276594	NM_024504.3	565	atG/atA																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598812	28598812	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	162	663	0	ENST00000253063.3:c.372G>C	p.Gln124His	p.Q124H	ENST00000253063	NM_031459.4	124	caG/caC																																																																															
SLX4	84464	MSKCC	GRCh37	16	3644561	3644561	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	115	846	0	ENST00000294008.3:c.2053G>C	p.Val685Leu	p.V685L	ENST00000294008	NM_032444.2	685	Gtc/Ctc																																																																															
KIT	3815	MSKCC	GRCh37	4	55589840	55589841	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0017812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	69	436	0	ENST00000288135.5:c.1326_1327dup	p.Cys443PhefsTer21	p.C443Ffs*21	ENST00000288135	NM_000222.2	441	tat/taTTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	160	460	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	193	704	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579384	7579387	+	frameshift_variant	Frame_Shift_Del	DEL	TTTC	TTTC	-			P-0024793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	121	806	0	ENST00000269305.4:c.300_303del	p.Lys101ProfsTer21	p.K101Pfs*21	ENST00000269305	NM_001126112.2	100	caGAAA/ca																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281940	39281940	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	75	377	0	ENST00000402219.2:c.535G>C	p.Asp179His	p.D179H	ENST00000402219	NM_005633.3	179	Gat/Cat																																																																															
KIT	3815	MSKCC	GRCh37	4	55561789	55561793	+	frameshift_variant	Frame_Shift_Del	DEL	ATCCG	ATCCG	TTA			P-0024793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	88	441	1	ENST00000288135.5:c.179_183delinsTTA	p.Asp60ValfsTer9	p.D60Vfs*9	ENST00000288135	NM_000222.2	60	gATCCG/gTTA																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	200	283	0	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	325	473	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	161	263	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	156	275	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100425	8100425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	358	533	0	ENST00000346208.3:c.404delC	p.Pro135ArgfsTer60	p.P135Rfs*60	ENST00000346208		133	taC/ta																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255500	16255500	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140341054		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	210	401	0	ENST00000375759.3:c.2765C>T	p.Thr922Met	p.T922M	ENST00000375759	NM_015001.2	922	aCg/aTg																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	525	650	2	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	339	580	2	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
TERT	7015	MSKCC	GRCh37	5	1293457	1293457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	372	478	0	ENST00000310581.5:c.1544G>A	p.Arg515Gln	p.R515Q	ENST00000310581	NM_198253.2	515	cGg/cAg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	467	545	0	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279825	46279836	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAA	CAGCAGCAGCAA	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	59	287	3	ENST00000371998.3:c.3762_3773delACAGCAGCAGCA	p.Gln1273_Gln1276del	p.Q1273_Q1276del	ENST00000371998		1251	CAGCAGCAGCAA/-																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255883	16255883	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	213	305	0	ENST00000375759.3:c.3154delA	p.Ile1052SerfsTer40	p.I1052Sfs*40	ENST00000375759	NM_015001.2	1050	Aaa/aa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	194	344	8	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281250	15281250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1184522923		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	502	648	0	ENST00000263388.2:c.5006G>A	p.Arg1669His	p.R1669H	ENST00000263388	NM_000435.2	1669	cGc/cAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	248	286	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276722	15276722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	402	525	2	ENST00000263388.2:c.5543G>A	p.Arg1848His	p.R1848H	ENST00000263388	NM_000435.2	1848	cGt/cAt																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	500	342	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	151	404	7	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131924382	131924382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	83	200	0	ENST00000265335.6:c.1055G>A	p.Arg352His	p.R352H	ENST00000265335		352	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112137039	112137039	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	199	358	0	ENST00000257430.4:c.793G>T	p.Gly265Ter	p.G265*	ENST00000257430	NM_000038.5	265	Gga/Tga																																																																															
RARA	5914	MSKCC	GRCh37	17	38510723	38510723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	250	309	0	ENST00000254066.5:c.977C>T	p.Thr326Met	p.T326M	ENST00000254066	NM_000964.3	326	aCg/aTg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564530	86564530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	78	390	0	ENST00000274376.6:c.266del	p.Gly89GlufsTer7	p.G89Efs*7	ENST00000274376	NM_002890.2	88	Ggg/gg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411411	63411411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	359	254	0	ENST00000330258.3:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000330258	NM_152424.3	586	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244155	153244156	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	282	388	0	ENST00000281708.4:c.2001dup	p.Ser668GlufsTer26	p.S668Efs*26	ENST00000281708	NM_033632.3	667	-/G																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	213	294	0	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753011	57753012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	105	256	6	ENST00000274289.3:c.1004dupT	p.Leu335PhefsTer12	p.L335Ffs*12	ENST00000274289	NM_006622.3	335	ttg/ttTg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070361	37070361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	206	311	0	ENST00000231790.2:c.1496G>T	p.Arg499Met	p.R499M	ENST00000231790	NM_000249.3	499	aGg/aTg																																																																															
ATM	472	MSKCC	GRCh37	11	108173696	108173696	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	89	288	0	ENST00000278616.4:c.5441del	p.Leu1814TrpfsTer14	p.L1814Wfs*14	ENST00000278616	NM_000051.3	1812	gcT/gc																																																																															
EP300	2033	MSKCC	GRCh37	22	41574679	41574679	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	473	612	2	ENST00000263253.7:c.6970delC	p.His2324ThrfsTer29	p.H2324Tfs*29	ENST00000263253	NM_001429.3	2322	Ccc/cc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780181	9780181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	366	442	0	ENST00000377346.4:c.1351G>A	p.Glu451Lys	p.E451K	ENST00000377346	NM_005026.3	451	Gag/Aag																																																																															
MALT1	10892	MSKCC	GRCh37	18	56348561	56348561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	112	198	0	ENST00000348428.3:c.374del	p.Pro125GlnfsTer3	p.P125Qfs*3	ENST00000348428	NM_006785.3	123	agC/ag																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940112	49940112	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	301	540	2	ENST00000296474.3:c.931del	p.Ala311ProfsTer27	p.A311Pfs*27	ENST00000296474	NM_002447.2	311	Gcc/cc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	341	495	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	418	457	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396886	139396886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	175	419	1	ENST00000277541.6:c.5222C>T	p.Ala1741Val	p.A1741V	ENST00000277541	NM_017617.3	1741	gCg/gTg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	107	301	2	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																															
MET	4233	MSKCC	GRCh37	7	116339280	116339280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	52	249	0	ENST00000397752.3:c.142G>A	p.Ala48Thr	p.A48T	ENST00000397752	NM_000245.2	48	Gcg/Acg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39728847	39728847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	149	257	0	ENST00000361337.2:c.1127G>A	p.Arg376Gln	p.R376Q	ENST00000361337	NM_003286.2	376	cGa/cAa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779743	3779743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	292	452	0	ENST00000262367.5:c.5305C>T	p.Arg1769Trp	p.R1769W	ENST00000262367	NM_004380.2	1769	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	282	641	1	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																															
PARP1	142	MSKCC	GRCh37	1	226576366	226576366	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	199	383	0	ENST00000366794.5:c.708del	p.Ala237ProfsTer2	p.A237Pfs*2	ENST00000366794	NM_001618.3	236	aaA/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	442	653	2	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
RET	5979	MSKCC	GRCh37	10	43597883	43597883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	438	603	1	ENST00000355710.3:c.431G>A	p.Arg144His	p.R144H	ENST00000355710	NM_020975.4	144	cGc/cAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048787	180048787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	312	632	2	ENST00000261937.6:c.1775G>A	p.Arg592His	p.R592H	ENST00000261937	NM_182925.4	592	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214866	36214866	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	519	625	3	ENST00000222270.7:c.3296del	p.Gly1099AlafsTer83	p.G1099Afs*83	ENST00000222270	NM_014727.1	1098	Ggg/gg																																																																															
INSR	3643	MSKCC	GRCh37	19	7184610	7184610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	225	241	0	ENST00000302850.5:c.691G>A	p.Glu231Lys	p.E231K	ENST00000302850	NM_000208.2	231	Gaa/Aaa																																																																															
MED12	9968	MSKCC	GRCh37	X	70361086	70361091	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	106	143	0	ENST00000374080.3:c.6285_6290del	p.Gln2114_Gln2115del	p.Q2114_Q2115del	ENST00000374080		2092	CAGCAA/-																																																																															
CASP8	841	MSKCC	GRCh37	2	202136268	202136268	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	206	397	0	ENST00000358485.4:c.512T>C	p.Val171Ala	p.V171A	ENST00000358485	NM_001080125.1	171	gTg/gCg																																																																															
MED12	9968	MSKCC	GRCh37	X	70361092	70361100	+	inframe_deletion	In_Frame_Del	DEL	CAGCAACAG	CAGCAACAG	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	21	152	0	ENST00000374080.3:c.6285_6293del	p.Gln2113_Gln2115del	p.Q2113_Q2115del	ENST00000374080		2094	CAGCAACAG/-																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46267849	46267849	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	226	439	1	ENST00000371998.3:c.2615del	p.Asn872IlefsTer20	p.N872Ifs*20	ENST00000371998		870	gtA/gt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969978	81969978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	203	273	0	ENST00000359376.3:c.3047C>T	p.Thr1016Met	p.T1016M	ENST00000359376	NM_002661.3	1016	aCg/aTg																																																																															
YAP1	10413	MSKCC	GRCh37	11	102033228	102033228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	416	425	0	ENST00000282441.5:c.614C>T	p.Ala205Val	p.A205V	ENST00000282441	NM_001130145.2	205	gCc/gTc																																																																															
REL	5966	MSKCC	GRCh37	2	61145678	61145678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	158	375	0	ENST00000295025.8:c.790C>T	p.Arg264Trp	p.R264W	ENST00000295025	NM_002908.2	264	Cgg/Tgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190344	32190344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146490163		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	318	459	1	ENST00000375023.3:c.395G>A	p.Arg132His	p.R132H	ENST00000375023	NM_004557.3	132	cGc/cAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89355061	89355061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	330	424	0	ENST00000301030.4:c.619G>A	p.Glu207Lys	p.E207K	ENST00000301030	NM_001256183.1	207	Gag/Aag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227816	36227816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	469	578	0	ENST00000222270.7:c.7301C>T	p.Ala2434Val	p.A2434V	ENST00000222270	NM_014727.1	2434	gCg/gTg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143159144	143159144	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	81	222	0	ENST00000262992.4:c.709A>G	p.Lys237Glu	p.K237E	ENST00000262992	NM_001101669.1	237	Aaa/Gaa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123260445	123260445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	275	392	0	ENST00000358487.5:c.1456C>T	p.Pro486Ser	p.P486S	ENST00000358487	NM_000141.4	486	Ccc/Tcc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780881	9780881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	420	596	0	ENST00000377346.4:c.1603C>T	p.Arg535Trp	p.R535W	ENST00000377346	NM_005026.3	535	Cgg/Tgg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781541	9781541	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	284	388	0	ENST00000377346.4:c.1851G>T	p.Gln617His	p.Q617H	ENST00000377346	NM_005026.3	617	caG/caT																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466341	120466341	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	97	382	0	ENST00000256646.2:c.4778A>G	p.Tyr1593Cys	p.Y1593C	ENST00000256646	NM_024408.3	1593	tAt/tGt																																																																															
SUFU	51684	MSKCC	GRCh37	10	104359302	104359302	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	286	328	0	ENST00000369902.3:c.1022+1G>A		p.X341_splice	ENST00000369902	NM_016169.3	341																																																																																
RECQL	5965	MSKCC	GRCh37	12	21629872	21629872	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	134	379	0	ENST00000421138.2:c.922A>G	p.Ile308Val	p.I308V	ENST00000421138		308	Att/Gtt																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944698	31944701	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	17	40	0	ENST00000340398.3:c.400_403del	p.Arg134LeufsTer3	p.R134Lfs*3	ENST00000340398	NM_001013699.2	134	AGAGct/ct																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562394	21562394	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	380	406	0	ENST00000382592.4:c.1525C>A	p.Pro509Thr	p.P509T	ENST00000382592	NM_014572.2	509	Cca/Aca																																																																															
BLM	641	MSKCC	GRCh37	15	91358330	91358331	+	splice_acceptor_variant	Splice_Site	INS	-	-	G			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	140	244	0	ENST00000355112.3:c.4080dup		p.X1360_splice	ENST00000355112	NM_000057.2	1360																																																																																
IGF1R	3480	MSKCC	GRCh37	15	99250907	99250907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	301	371	0	ENST00000268035.6:c.211C>A	p.Arg71Ser	p.R71S	ENST00000268035	NM_000875.3	71	Cgc/Agc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99482454	99482454	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	271	355	0	ENST00000268035.6:c.3322A>C	p.Ser1108Arg	p.S1108R	ENST00000268035	NM_000875.3	1108	Agc/Cgc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2124201	2124201	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	299	383	0	ENST00000219476.3:c.2356C>T	p.Arg786Cys	p.R786C	ENST00000219476	NM_000548.3	786	Cgc/Tgc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2133731	2133731	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62642481		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	115	605	0	ENST00000219476.3:c.3919G>A	p.Glu1307Lys	p.E1307K	ENST00000219476	NM_000548.3	1307	Gag/Aag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779749	3779749	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	315	464	0	ENST00000262367.5:c.5299T>A	p.Ser1767Thr	p.S1767T	ENST00000262367	NM_004380.2	1767	Tca/Aca																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3929878	3929878	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	284	399	1	ENST00000262367.5:c.40del	p.Arg14GlufsTer31	p.R14Efs*31	ENST00000262367	NM_004380.2	14	Aga/ga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984391	72984391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	278	342	0	ENST00000268489.5:c.3193G>A	p.Glu1065Lys	p.E1065K	ENST00000268489	NM_006885.3	1065	Gag/Aag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16062081	16062083	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	201	262	0	ENST00000268712.3:c.723_725del	p.Asp241del	p.D241del	ENST00000268712	NM_006311.3	241	gaTGAg/gag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16097774	16097774	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	271	397	0	ENST00000268712.3:c.108+2T>C		p.X36_splice	ENST00000268712	NM_006311.3	36																																																																																
SUZ12	23512	MSKCC	GRCh37	17	30321667	30321667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	196	463	1	ENST00000322652.5:c.1522C>T	p.Arg508Cys	p.R508C	ENST00000322652	NM_015355.2	508	Cgc/Tgc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37646884	37646884	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	355	505	2	ENST00000447079.4:c.2006T>C	p.Leu669Pro	p.L669P	ENST00000447079	NM_015083.1	669	cTt/cCt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604770	48604770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	244	278	0	ENST00000342988.3:c.1592G>A	p.Arg531Gln	p.R531Q	ENST00000342988	NM_005359.5	531	cGg/cAg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1627406	1627407	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	470	574	1	ENST00000344749.5:c.317dup	p.Ala107ArgfsTer85	p.A107Rfs*85	ENST00000344749	NM_001136139.2	106	ggc/ggGc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5239011	5239011	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	421	579	1	ENST00000357368.4:c.1768T>C	p.Tyr590His	p.Y590H	ENST00000357368	NM_002850.3	590	Tac/Cac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281364	15281364	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	300	505	0	ENST00000263388.2:c.4892G>A	p.Gly1631Glu	p.G1631E	ENST00000263388	NM_000435.2	1631	gGg/gAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210892	36210893	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	351	627	0	ENST00000222270.7:c.649dupC	p.Arg217ProfsTer35	p.R217Pfs*35	ENST00000222270	NM_014727.1	215	acc/aCcc																																																																															
AKT2	208	MSKCC	GRCh37	19	40761168	40761168	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	324	390	0	ENST00000392038.2:c.184C>A	p.Leu62Met	p.L62M	ENST00000392038	NM_001626.4	62	Ctg/Atg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467502	25467502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	370	489	1	ENST00000264709.3:c.1574C>T	p.Ala525Val	p.A525V	ENST00000264709	NM_175629.2	525	gCg/gTg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99189344	99189344	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	382	415	0	ENST00000074304.5:c.2600A>G	p.His867Arg	p.H867R	ENST00000074304	NM_001134224.1	867	cAt/cGt																																																																															
CASP8	841	MSKCC	GRCh37	2	202137425	202137425	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	203	334	0	ENST00000358485.4:c.653T>C	p.Ile218Thr	p.I218T	ENST00000358485	NM_001080125.1	218	aTc/aCc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660772	227660772	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	280	428	0	ENST00000305123.5:c.2683del	p.Glu895AsnfsTer48	p.E895Nfs*48	ENST00000305123	NM_005544.2	895	Gaa/aa																																																																															
AURKA	6790	MSKCC	GRCh37	20	54958233	54958233	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	145	254	0	ENST00000312783.6:c.375-1G>A		p.X125_splice	ENST00000312783	NM_198436.1	125																																																																																
GNAS	2778	MSKCC	GRCh37	20	57484242	57484242	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	244	302	0	ENST00000371085.3:c.556A>G	p.Lys186Glu	p.K186E	ENST00000371085	NM_000516.4	186	Aag/Gag																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62321659	62321660	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	355	484	0	ENST00000508582.2:c.2356dup	p.Arg786ProfsTer29	p.R786Pfs*29	ENST00000508582		784	gcc/gCcc																																																																															
EP300	2033	MSKCC	GRCh37	22	41574269	41574269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	376	516	0	ENST00000263253.7:c.6554G>A	p.Arg2185Gln	p.R2185Q	ENST00000263253	NM_001429.3	2185	cGa/cAa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439909	52439909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	77	346	0	ENST00000460680.1:c.803C>T	p.Pro268Leu	p.P268L	ENST00000460680	NM_004656.3	268	cCa/cTa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440867	52440867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	402	462	0	ENST00000460680.1:c.637C>T	p.Arg213Cys	p.R213C	ENST00000460680	NM_004656.3	213	Cgt/Tgt																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749379	41749379	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	163	223	0	ENST00000226382.2:c.416A>C	p.Glu139Ala	p.E139A	ENST00000226382	NM_003924.3	139	gAg/gCg																																																																															
KIT	3815	MSKCC	GRCh37	4	55564559	55564559	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	301	429	0	ENST00000288135.5:c.450del	p.Cys151AlafsTer10	p.C151Afs*10	ENST00000288135	NM_000222.2	149	aaG/aa																																																																															
TERT	7015	MSKCC	GRCh37	5	1293760	1293760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	442	602	0	ENST00000310581.5:c.1241C>T	p.Pro414Leu	p.P414L	ENST00000310581	NM_198253.2	414	cCg/cTg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518050	176518050	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149737957		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	454	524	3	ENST00000292408.4:c.548G>A	p.Arg183His	p.R183H	ENST00000292408	NM_213647.1	183	cGc/cAc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910704	29910704	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	353	704	0	ENST00000376809.5:c.244G>T	p.Glu82Ter	p.E82*	ENST00000376809	NM_002116.7	82	Gag/Tag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163553	32163554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	112	406	0	ENST00000375023.3:c.5671_5672dup	p.Gly1892AlafsTer13	p.G1892Afs*13	ENST00000375023	NM_004557.3	1891	ggc/ggGGc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815832	32815832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	383	465	0	ENST00000354258.4:c.1784C>T	p.Ala595Val	p.A595V	ENST00000354258	NM_000593.5	595	gCg/gTg																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43748504	43748504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	318	358	1	ENST00000523873.1:c.458G>A	p.Arg153Gln	p.R153Q	ENST00000523873		153	cGa/cAa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2952951	2952951	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	433	452	0	ENST00000396946.4:c.2989G>T	p.Gly997Cys	p.G997C	ENST00000396946	NM_032415.4	997	Ggt/Tgt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959181	2959181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	395	486	0	ENST00000396946.4:c.2335C>T	p.Arg779Trp	p.R779W	ENST00000396946	NM_032415.4	779	Cgg/Tgg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968238	2968238	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	461	507	0	ENST00000396946.4:c.1748A>G	p.His583Arg	p.H583R	ENST00000396946	NM_032415.4	583	cAt/cGt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5064973	5064973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	98	288	0	ENST00000381652.3:c.1147C>T	p.Leu383Phe	p.L383F	ENST00000381652	NM_004972.3	383	Ctc/Ttc																																																																															
SYK	6850	MSKCC	GRCh37	9	93606412	93606412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	348	481	1	ENST00000375746.1:c.232G>A	p.Gly78Ser	p.G78S	ENST00000375746	NM_001174167.1	78	Ggt/Agt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209582	98209582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	330	474	1	ENST00000331920.6:c.3956G>A	p.Arg1319His	p.R1319H	ENST00000331920	NM_000264.3	1319	cGc/cAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139403510	139403510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	387	513	0	ENST00000277541.6:c.2983G>A	p.Gly995Ser	p.G995S	ENST00000277541	NM_017617.3	995	Ggt/Agt																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139563106	139563106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	331	443	1	ENST00000308874.7:c.178C>T	p.Arg60Trp	p.R60W	ENST00000308874		60	Cgg/Tgg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411302	63411302	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	368	271	0	ENST00000330258.3:c.1865A>G	p.Glu622Gly	p.E622G	ENST00000330258	NM_152424.3	622	gAg/gGg																																																																															
MED12	9968	MSKCC	GRCh37	X	70360645	70360647	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	10	150	0	ENST00000374080.3:c.6207_6209del	p.Gln2076del	p.Q2076del	ENST00000374080		2069	CAA/-																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2491272	2491273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0034350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	54	733	0	ENST00000355716.4:c.316dup	p.Arg106ProfsTer128	p.R106Pfs*128	ENST00000355716	NM_003820.2	105	-/C																																																																															
TP53	7157	MSKCC	GRCh37	17	7579361	7579364	+	frameshift_variant	Frame_Shift_Del	DEL	AAAC	AAAC	-			P-0034350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	78	761	0	ENST00000269305.4:c.323_326del	p.Gly108AlafsTer14	p.G108Afs*14	ENST00000269305	NM_001126112.2	108	gGTTTc/gc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095869	178095869	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	84	606	0	ENST00000397062.3:c.1462G>C	p.Glu488Gln	p.E488Q	ENST00000397062	NM_006164.4	488	Gag/Cag																																																																															
KIT	3815	MSKCC	GRCh37	4	55561754	55561754	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	39	417	0	ENST00000288135.5:c.145del	p.Arg49AlafsTer55	p.R49Afs*55	ENST00000288135	NM_000222.2	48	gtC/gt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38963019	38963019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	20	439	1	ENST00000357387.3:c.1525G>A	p.Asp509Asn	p.D509N	ENST00000357387	NM_152756.3	509	Gat/Aat																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004865	150004865	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	123	626	0	ENST00000253339.5:c.1360T>G	p.Trp454Gly	p.W454G	ENST00000253339		454	Tgg/Ggg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747342068		P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	594	708	0	ENST00000269305.4:c.394A>G	p.Lys132Glu	p.K132E	ENST00000269305	NM_001126112.2	132	Aag/Gag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347852	347852	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	68	762	0	ENST00000262320.3:c.1654G>C	p.Ala552Pro	p.A552P	ENST00000262320	NM_003502.3	552	Gcc/Ccc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582849	95582849	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	50	357	0	ENST00000343455.3:c.1693G>T	p.Asp565Tyr	p.D565Y	ENST00000343455	NM_177438.2	565	Gat/Tat																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786069	3786069	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	365	573	0	ENST00000262367.5:c.4696G>T	p.Glu1566Ter	p.E1566*	ENST00000262367	NM_004380.2	1566	Gaa/Taa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350181	89350181	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	74	834	0	ENST00000301030.4:c.2769G>C	p.Gln923His	p.Q923H	ENST00000301030	NM_001256183.1	923	caG/caC																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78727938	78727948	+	frameshift_variant	Frame_Shift_Del	DEL	CCTATTCACCT	CCTATTCACCT	-			P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	45	444	0	ENST00000306801.3:c.786_796del	p.Phe263ProfsTer45	p.F263Pfs*45	ENST00000306801	NM_020761.2	261	gaCCTATTCACCTcc/gacc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599903	10599903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	502	578	0	ENST00000171111.5:c.1673G>T	p.Gly558Val	p.G558V	ENST00000171111	NM_203500.1	558	gGg/gTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11113822	11113822	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	124	475	0	ENST00000344626.4:c.1930G>C	p.Glu644Gln	p.E644Q	ENST00000344626	NM_003072.3	644	Gag/Cag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247382	71247382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	218	454	0	ENST00000318789.4:c.151C>T	p.Leu51Phe	p.L51F	ENST00000318789	NM_032682.5	51	Ctc/Ttc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417913	138417913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	96	368	0	ENST00000289153.2:c.1606C>T	p.Pro536Ser	p.P536S	ENST00000289153	NM_006219.2	536	Cct/Tct																																																																															
KIT	3815	MSKCC	GRCh37	4	55561796	55561809	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTGTCAAATGGA	CTTTGTCAAATGGA	-			P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	154	355	0	ENST00000288135.5:c.190_203del	p.Val64Ter	p.V64*	ENST00000288135	NM_000222.2	62	ggCTTTGTCAAATGGAct/ggct																																																																															
TEK	7010	MSKCC	GRCh37	9	27229161	27229161	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	290	491	0	ENST00000380036.4:c.3306C>A	p.Tyr1102Ter	p.Y1102*	ENST00000380036	NM_000459.3	1102	taC/taA																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417343	139417352	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCAGGTGC	CGGCAGGTGC	-			P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	24	389	0	ENST00000277541.6:c.692_701del	p.Gly231AlafsTer43	p.G231Afs*43	ENST00000277541	NM_017617.3	231	gGCACCTGCCGc/gc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786795	3786795	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	106	316	1	ENST00000262367.5:c.4416G>T	p.Trp1472Cys	p.W1472C	ENST00000262367	NM_004380.2	1472	tgG/tgT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1912	91	520	0	ENST00000269305.4:c.811G>C	p.Glu271Gln	p.E271Q	ENST00000269305	NM_001126112.2	271	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs786201057		P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1474	269	434	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627330	37627330	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	40	435	0	ENST00000447079.4:c.1245G>T	p.Met415Ile	p.M415I	ENST00000447079	NM_015083.1	415	atG/atT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141499	11141499	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1733	412	586	2	ENST00000344626.4:c.3476G>T	p.Gly1159Val	p.G1159V	ENST00000344626	NM_003072.3	1159	gGg/gTg																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14629038	14629038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2105	177	370	0	ENST00000254322.2:c.124G>A	p.Glu42Lys	p.E42K	ENST00000254322	NM_006145.1	42	Gag/Aag																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14629122	14629122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2263	219	320	2	ENST00000254322.2:c.40G>A	p.Gly14Ser	p.G14S	ENST00000254322	NM_006145.1	14	Ggc/Agc																																																																															
IDH1	3417	MSKCC	GRCh37	2	209110081	209110081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	10	444	0	ENST00000345146.2:c.482G>A	p.Gly161Glu	p.G161E	ENST00000345146	NM_005896.2	161	gGa/gAa																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748111	41748111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	160	104	0	ENST00000226382.2:c.658C>A	p.Pro220Thr	p.P220T	ENST00000226382	NM_003924.3	220	Ccg/Acg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155576	56155576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	97	279	0	ENST00000399503.3:c.668C>T	p.Ser223Phe	p.S223F	ENST00000399503	NM_005921.1	223	tCt/tTt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188963	32188963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2131	303	609	0	ENST00000375023.3:c.591G>T	p.Glu197Asp	p.E197D	ENST00000375023	NM_004557.3	197	gaG/gaT																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528930	157528930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1398	223	425	0	ENST00000346085.5:c.6655G>A	p.Glu2219Lys	p.E2219K	ENST00000346085	NM_020732.3	2219	Gag/Aag																																																																															
MED12	9968	MSKCC	GRCh37	X	70349167	70349167	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	256	442	1	ENST00000374080.3:c.3579C>A	p.Asn1193Lys	p.N1193K	ENST00000374080		1193	aaC/aaA																																																																															
ATRX	546	MSKCC	GRCh37	X	76938752	76938752	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	19	535	0	ENST00000373344.5:c.1996C>G	p.Arg666Gly	p.R666G	ENST00000373344	NM_000489.3	666	Cga/Gga																																																																															
ATRX	546	MSKCC	GRCh37	X	76939036	76939036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	23	422	0	ENST00000373344.5:c.1712G>C	p.Arg571Thr	p.R571T	ENST00000373344	NM_000489.3	571	aGa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	20	465	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	224	320	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	474	545	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	464	586	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906958	32906958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	115	309	0	ENST00000380152.3:c.1343G>A	p.Arg448His	p.R448H	ENST00000380152		448	cGt/cAt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67655391	67655391	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	391	416	0	ENST00000264010.4:c.1254A>T	p.Gln418His	p.Q418H	ENST00000264010	NM_006565.3	418	caA/caT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610078	10610078	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	399	452	0	ENST00000171111.5:c.632T>A	p.Phe211Tyr	p.F211Y	ENST00000171111	NM_203500.1	211	tTt/tAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151917703	151917703	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0038443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	185	232	0	ENST00000262189.6:c.3617T>A	p.Leu1206Ter	p.L1206*	ENST00000262189	NM_170606.2	1206	tTg/tAg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38157097	38157097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	153	439	0	ENST00000317025.8:c.2623C>A	p.Gln875Lys	p.Q875K	ENST00000317025	NM_023034.1	875	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0038501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	125	660	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579408	7579430	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGCCAGGAGGGGGCTGGTG	CAGGGGCCAGGAGGGGGCTGGTG	-			P-0038501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	128	682	0	ENST00000269305.4:c.257_279delCACCAGCCCCCTCCTGGCCCCTG	p.Ala86ValfsTer55	p.A86Vfs*55	ENST00000269305	NM_001126112.2	86	gCACCAGCCCCCTCCTGGCCCCTG/g																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502287	157502287	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	69	530	0	ENST00000346085.5:c.3320T>G	p.Val1107Gly	p.V1107G	ENST00000346085	NM_020732.3	1107	gTc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0038502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	332	736	1	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	77	370	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc																																																																															
BRAF	673	MSKCC	GRCh37	7	140481397	140481397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	93	401	0	ENST00000288602.6:c.1411G>T	p.Val471Phe	p.V471F	ENST00000288602	NM_004333.4	471	Gtc/Ttc																																																																															
APC	324	MSKCC	GRCh37	5	112175944	112175945	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0038502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	38	288	0	ENST00000257430.4:c.4655_4656del	p.Glu1552GlyfsTer6	p.E1552Gfs*6	ENST00000257430	NM_000038.5	1551	aaAGag/aaag																																																																															
APC	324	MSKCC	GRCh37	5	112116529	112116529	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	79	393	1	ENST00000257430.4:c.574G>T	p.Glu192Ter	p.E192*	ENST00000257430	NM_000038.5	192	Gaa/Taa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162622235	162622235	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0038502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	193	520	0	ENST00000366898.1:c.462T>A	p.Cys154Ter	p.C154*	ENST00000366898	NM_004562.2	154	tgT/tgA																																																																															
JAK2	3717	MSKCC	GRCh37	9	5078325	5078325	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	19	403	0	ENST00000381652.3:c.2012A>C	p.His671Pro	p.H671P	ENST00000381652	NM_004972.3	671	cAt/cCt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	405	540	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0038510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	121	451	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921551	178921551	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	82	466	0	ENST00000263967.3:c.1033A>C	p.Asn345His	p.N345H	ENST00000263967	NM_006218.2	345	Aat/Cat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088715	27088716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCT			P-0038510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	176	810	0	ENST00000324856.7:c.2325_2328dup	p.Ser777AlafsTer41	p.S777Afs*41	ENST00000324856	NM_006015.4	775	cag/caGCCTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1271250	1271250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	95	455	1	ENST00000310581.5:c.2452G>A	p.Val818Met	p.V818M	ENST00000310581	NM_198253.2	818	Gtg/Atg																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43749818	43749818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	70	503	0	ENST00000523873.1:c.671C>A	p.Thr224Asn	p.T224N	ENST00000523873		224	aCt/aAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	43	778	0	ENST00000269305.4:c.833C>A	p.Pro278His	p.P278H	ENST00000269305	NM_001126112.2	278	cCt/cAt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489556	40489569	+	frameshift_variant	Frame_Shift_Del	DEL	GCACGTACTCCATC	GCACGTACTCCATC	-			P-0038536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	28	592	0	ENST00000264657.5:c.681_694del	p.Met228GlufsTer10	p.M228Efs*10	ENST00000264657	NM_139276.2	227	gcGATGGAGTACGTGCag/gcag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679649	30679649	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0038536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	42	610	0	ENST00000376406.3:c.2068+2T>C		p.X690_splice	ENST00000376406	NM_014641.2	690																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	134	457	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RB1	5925	MSKCC	GRCh37	13	48955383	48955383	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	27	231	0	ENST00000267163.4:c.1499G>A	p.Arg500Lys	p.R500K	ENST00000267163	NM_000321.2	500	aGa/aAa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150016359	150016359	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0038539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	76	381	0	ENST00000253339.5:c.349-2A>C		p.X117_splice	ENST00000253339		117																																																																																
IKZF1	10320	MSKCC	GRCh37	7	50455151	50455151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	27	399	0	ENST00000331340.3:c.698C>T	p.Pro233Leu	p.P233L	ENST00000331340	NM_006060.4	233	cCg/cTg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135804175	135804175	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	114	482	0	ENST00000298552.3:c.85T>G	p.Phe29Val	p.F29V	ENST00000298552	NM_001162426.1	29	Ttt/Gtt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	275	332	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0038541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	536	755	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0038541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	374	534	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793211	139793212	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	206	724	1	ENST00000247668.2:c.26dup	p.Gly10TrpfsTer70	p.G10Wfs*70	ENST00000247668	NM_021138.3	7	acc/aCcc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913711	32913714	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	TAAG	TAAG	AAA			P-0038541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	314	368	0	ENST00000380152.3:c.5219_5222delinsAAA	p.Leu1740Ter	p.L1740*	ENST00000380152		1740	tTAAGt/tAAAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	44	337	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	267	769	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	25	238	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508083	106508083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	14	239	0	ENST00000359195.3:c.77G>A	p.Arg26His	p.R26H	ENST00000359195	NM_002649.2	26	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	127	371	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	47	346	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	93	344	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830925	72830925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	48	481	0	ENST00000268489.5:c.5656G>A	p.Glu1886Lys	p.E1886K	ENST00000268489	NM_006885.3	1886	Gaa/Aaa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419897	41419897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	67	532	1	ENST00000373198.4:c.424G>A	p.Val142Ile	p.V142I	ENST00000373198	NM_133170.3	142	Gtc/Atc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372254	55372254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1358462345		P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	40	476	0	ENST00000297316.4:c.944C>T	p.Pro315Leu	p.P315L	ENST00000297316	NM_022454.3	315	cCg/cTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088795	27088795	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	71	562	0	ENST00000324856.7:c.2404C>T	p.Gln802Ter	p.Q802*	ENST00000324856	NM_006015.4	802	Cag/Tag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134644703	134644703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	64	446	0	ENST00000398015.3:c.104C>T	p.Thr35Met	p.T35M	ENST00000398015	NM_004441.4	35	aCg/aTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528243	157528243	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	111	553	0	ENST00000346085.5:c.5968C>T	p.Arg1990Ter	p.R1990*	ENST00000346085	NM_020732.3	1990	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903709	114903712	+	frameshift_variant	Frame_Shift_Del	DEL	ATAT	ATAT	-			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	151	553	0	ENST00000543371.1:c.715_718del	p.Ile239ProfsTer11	p.I239Pfs*11	ENST00000543371	NM_001198531.1	238	gATATa/ga																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119706	17119706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	53	519	0	ENST00000285071.4:c.1288G>A	p.Val430Met	p.V430M	ENST00000285071	NM_144997.5	430	Gtg/Atg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	42	380	0	ENST00000349496.5:c.1982G>C	p.Arg661Pro	p.R661P	ENST00000349496	NM_001904.3	661	cGa/cCa																																																																															
APC	324	MSKCC	GRCh37	5	112175460	112175464	+	frameshift_variant	Frame_Shift_Del	DEL	TCAGT	TCAGT	-			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	28	293	0	ENST00000257430.4:c.4172_4176del	p.Ser1391ThrfsTer2	p.S1391Tfs*2	ENST00000257430	NM_000038.5	1390	gTCAGT/g																																																																															
SESN1	27244	MSKCC	GRCh37	6	109415113	109415113	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	138	751	0	ENST00000436639.2:c.164del	p.Asn55IlefsTer8	p.N55Ifs*8	ENST00000436639	NM_014454.2	55	aAt/at																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0038552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	110	468	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0038552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	61	237	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																																
ATR	545	MSKCC	GRCh37	3	142218544	142218544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	132	343	0	ENST00000350721.4:c.5305G>A	p.Glu1769Lys	p.E1769K	ENST00000350721	NM_001184.3	1769	Gaa/Aaa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95583975	95583975	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	114	257	0	ENST00000343455.3:c.1493T>G	p.Phe498Cys	p.F498C	ENST00000343455	NM_177438.2	498	tTc/tGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874923	151874923	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	128	274	0	ENST00000262189.6:c.7615C>T	p.Gln2539Ter	p.Q2539*	ENST00000262189	NM_170606.2	2539	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878118	151878118	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	133	479	0	ENST00000262189.6:c.6827del	p.Pro2276LeufsTer29	p.P2276Lfs*29	ENST00000262189	NM_170606.2	2276	cCt/ct																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188513	11188513	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	92	428	0	ENST00000361445.4:c.5908del	p.Gln1970ArgfsTer7	p.Q1970Rfs*7	ENST00000361445	NM_004958.3	1970	Cag/ag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190747	11190747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	148	711	0	ENST00000361445.4:c.5452C>T	p.Arg1818Cys	p.R1818C	ENST00000361445	NM_004958.3	1818	Cgt/Tgt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11259654	11259654	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	123	504	0	ENST00000361445.4:c.4051G>A	p.Ala1351Thr	p.A1351T	ENST00000361445	NM_004958.3	1351	Gct/Act																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256367	16256367	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	125	525	0	ENST00000375759.3:c.3632T>C	p.Val1211Ala	p.V1211A	ENST00000375759	NM_015001.2	1211	gTa/gCa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023498	27023498	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	116	473	0	ENST00000324856.7:c.604T>A	p.Ser202Thr	p.S202T	ENST00000324856	NM_006015.4	202	Tct/Act																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101057	27101057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	172	707	0	ENST00000324856.7:c.4339C>T	p.Pro1447Ser	p.P1447S	ENST00000324856	NM_006015.4	1447	Cca/Tca																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598846	28598846	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	182	793	0	ENST00000253063.3:c.406T>C	p.Phe136Leu	p.F136L	ENST00000253063	NM_031459.4	136	Ttt/Ctt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115261305	115261305	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	128	443	0	ENST00000438362.2:c.2416A>G	p.Ile806Val	p.I806V	ENST00000438362	NM_001242891.1	806	Atc/Gtc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843709	156843709	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	202	946	0	ENST00000524377.1:c.1135A>C	p.Met379Leu	p.M379L	ENST00000524377	NM_002529.3	379	Atg/Ctg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982424	201982424	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	74	764	0	ENST00000359651.3:c.803A>G	p.His268Arg	p.H268R	ENST00000359651		268	cAc/cGc																																																																															
PARP1	142	MSKCC	GRCh37	1	226568891	226568891	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	33	386	0	ENST00000366794.5:c.1178T>C	p.Met393Thr	p.M393T	ENST00000366794	NM_001618.3	393	aTg/aCg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243778402	243778402	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	50	316	0	ENST00000263826.5:c.623del	p.Leu208Ter	p.L208*	ENST00000263826	NM_005465.4	208	tTa/ta																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	76	377	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																																																															
TET1	80312	MSKCC	GRCh37	10	70404669	70404669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	32	550	0	ENST00000373644.4:c.2183C>T	p.Ala728Val	p.A728V	ENST00000373644	NM_030625.2	728	gCt/gTt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925318	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	97	427	0	ENST00000543371.1:c.1402_1403del	p.Lys468ValfsTer8	p.K468Vfs*8	ENST00000543371	NM_001198531.1	465	agAAaa/agaa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138915	64138915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	109	511	0	ENST00000334205.4:c.2287delC	p.Arg763AlafsTer21	p.R763Afs*21	ENST00000334205	NM_003942.2	761	gCc/gc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	70	686	6	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71945661	71945661	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	121	409	0	ENST00000298229.2:c.2415+2T>C		p.X805_splice	ENST00000298229	NM_001567.3	805																																																																																
EED	8726	MSKCC	GRCh37	11	85988074	85988074	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	54	243	0	ENST00000263360.6:c.1019T>C	p.Ile340Thr	p.I340T	ENST00000263360	NM_003797.3	340	aTa/aCa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343597	118343597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	108	399	0	ENST00000534358.1:c.1723G>A	p.Ala575Thr	p.A575T	ENST00000534358	NM_005933.3	575	Gcc/Acc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	117	450	3	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	85	338	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427234	49427234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	166	768	0	ENST00000301067.7:c.11254G>A	p.Ala3752Thr	p.A3752T	ENST00000301067	NM_003482.3	3752	Gca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445512	49445512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	188	857	0	ENST00000301067.7:c.1954C>T	p.Arg652Cys	p.R652C	ENST00000301067	NM_003482.3	652	Cgc/Tgc																																																																															
MSI1	4440	MSKCC	GRCh37	12	120784098	120784098	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	192	907	2	ENST00000257552.2:c.887delC	p.Pro296LeufsTer57	p.P296Lfs*57	ENST00000257552	NM_002442.3	296	cCt/ct																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	150	732	7	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
POLE	5426	MSKCC	GRCh37	12	133201368	133201368	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	147	763	0	ENST00000320574.5:c.6776G>T	p.Arg2259Leu	p.R2259L	ENST00000320574	NM_006231.2	2259	cGg/cTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133245024	133245024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	179	801	3	ENST00000320574.5:c.2091del	p.Leu698CysfsTer94	p.L698Cfs*94	ENST00000320574	NM_006231.2	697	ccC/cc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012432	29012432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	106	499	0	ENST00000282397.4:c.439C>T	p.His147Tyr	p.H147Y	ENST00000282397	NM_002019.4	147	Cac/Tac																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041262	29041262	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	82	348	0	ENST00000282397.4:c.166delG	p.Glu56LysfsTer12	p.E56Kfs*12	ENST00000282397	NM_002019.4	56	Gaa/aa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32915089	32915090	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	90	496	0	ENST00000380152.3:c.6600_6601del	p.Ser2201Ter	p.S2201*	ENST00000380152		2199	acTTtt/actt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	80	261	7	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066844	30066844	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	109	514	0	ENST00000331968.5:c.2287T>C	p.Ser763Pro	p.S763P	ENST00000331968	NM_002742.2	763	Tct/Cct																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066865	30066865	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	111	542	0	ENST00000331968.5:c.2266A>T	p.Arg756Trp	p.R756W	ENST00000331968	NM_002742.2	756	Agg/Tgg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560242	95560242	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	15	289	0	ENST00000343455.3:c.5347C>T	p.Gln1783Ter	p.Q1783*	ENST00000343455	NM_177438.2	1783	Caa/Taa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43714075	43714075	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs773155828		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	177	686	2	ENST00000382044.4:c.4078C>T	p.Arg1360Ter	p.R1360*	ENST00000382044	NM_001141980.1	1360	Cga/Tga																																																																															
B2M	567	MSKCC	GRCh37	15	45003747	45003747	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	106	434	0	ENST00000558401.1:c.3G>T	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	atG/atT																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	117	456	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
B2M	567	MSKCC	GRCh37	15	45007896	45007897	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	88	299	0	ENST00000558401.1:c.346+1dup		p.W115fs	ENST00000558401	NM_004048.2	115	tgg/tGgg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	177	772	3	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2104393	2104393	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	164	700	0	ENST00000219476.3:c.433G>C	p.Ala145Pro	p.A145P	ENST00000219476	NM_000548.3	145	Gcc/Ccc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351327	89351327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	197	914	0	ENST00000301030.4:c.1623G>T	p.Gln541His	p.Q541H	ENST00000301030	NM_001256183.1	541	caG/caT																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15965000	15965002	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	48	507	1	ENST00000268712.3:c.5594_5596del	p.Gln1865del	p.Q1865del	ENST00000268712	NM_006311.3	1865	cAGCta/cta																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	129	563	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
NF1	4763	MSKCC	GRCh37	17	29552144	29552144	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	59	213	1	ENST00000358273.4:c.1882delT	p.Tyr628ThrfsTer3	p.Y628Tfs*3	ENST00000358273	NM_001042492.2	626	cTt/ct																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	29	507	2	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59885980	59885980	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	113	420	0	ENST00000259008.2:c.766A>T	p.Ile256Phe	p.I256F	ENST00000259008	NM_032043.2	256	Att/Ttt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78936338	78936338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	134	717	0	ENST00000306801.3:c.3770C>T	p.Thr1257Met	p.T1257M	ENST00000306801	NM_020761.2	1257	aCg/aTg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56348561	56348561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	66	252	0	ENST00000348428.3:c.374del	p.Pro125GlnfsTer3	p.P125Qfs*3	ENST00000348428	NM_006785.3	123	agC/ag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222058	2222058	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	165	798	0	ENST00000398665.3:c.2890A>G	p.Thr964Ala	p.T964A	ENST00000398665	NM_032482.2	964	Acc/Gcc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210754	5210754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	158	693	0	ENST00000357368.4:c.5297G>A	p.Arg1766His	p.R1766H	ENST00000357368	NM_002850.3	1766	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	17	171	1	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11095029	11095029	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	193	847	0	ENST00000344626.4:c.202A>G	p.Asn68Asp	p.N68D	ENST00000344626	NM_003072.3	68	Aac/Gac																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627694	14627694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	147	680	0	ENST00000254322.2:c.376G>A	p.Asp126Asn	p.D126N	ENST00000254322	NM_006145.1	126	Gac/Aac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296358	15296358	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	91	821	0	ENST00000263388.2:c.2084del	p.Pro695ArgfsTer165	p.P695Rfs*165	ENST00000263388	NM_000435.2	695	cCg/cg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	181	885	4	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	184	777	2	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868346	45868346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	187	850	0	ENST00000391945.4:c.431C>T	p.Ala144Val	p.A144V	ENST00000391945	NM_000400.3	144	gCg/gTg																																																																															
BBC3	27113	MSKCC	GRCh37	19	47735772	47735772	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	143	613	0	ENST00000449228.1:c.88G>A	p.Gly30Ser	p.G30S	ENST00000449228	NM_001127240.2	30	Ggc/Agc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716302	52716302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	142	630	0	ENST00000322088.6:c.746G>A	p.Arg249His	p.R249H	ENST00000322088	NM_014225.5	249	cGc/cAc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26022301	26022301	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	124	497	0	ENST00000435504.4:c.356A>G	p.Asp119Gly	p.D119G	ENST00000435504		119	gAt/gGt																																																																															
ALK	238	MSKCC	GRCh37	2	30143336	30143336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	149	650	0	ENST00000389048.3:c.190T>C	p.Phe64Leu	p.F64L	ENST00000389048	NM_004304.4	64	Ttc/Ctc																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47606178	47606181	+	frameshift_variant	Frame_Shift_Del	DEL	TTAT	TTAT	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	67	316	0	ENST00000263735.4:c.644_647del	p.Tyr215LeufsTer18	p.Y215Lfs*18	ENST00000263735	NM_002354.2	214	taTTAT/ta																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99179993	99179993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	155	701	0	ENST00000074304.5:c.1936G>A	p.Asp646Asn	p.D646N	ENST00000074304	NM_001134224.1	646	Gac/Aac																																																																															
CASP8	841	MSKCC	GRCh37	2	202131193	202131193	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	64	296	0	ENST00000358485.4:c.161T>G	p.Leu54Arg	p.L54R	ENST00000358485	NM_001080125.1	54	cTc/cGc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812292	212812292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	95	268	0	ENST00000342788.4:c.284G>A	p.Arg95His	p.R95H	ENST00000342788	NM_005235.2	95	cGt/cAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403254	213403254	+	frameshift_variant,start_lost	Frame_Shift_Del	DEL	T	T	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	66	405	1	ENST00000342788.4:c.1delA	p.Met1?	p.M1?	ENST00000342788	NM_005235.2	1	Atg/tg																																																																															
INHA	3623	MSKCC	GRCh37	2	220437223	220437223	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	171	901	0	ENST00000243786.2:c.132del	p.Ala45ArgfsTer2	p.A45Rfs*2	ENST00000243786	NM_002191.3	43	Ccc/cc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	58	345	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	111	528	0	ENST00000373198.4:c.3281C>T	p.Pro1094Leu	p.P1094L	ENST00000373198	NM_133170.3	1094	cCg/cTg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42842590	42842590	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	151	644	1	ENST00000398585.3:c.1267delG	p.Ala423ProfsTer12	p.A423Pfs*12	ENST00000398585	NM_001135099.1	423	Gcc/cc																																																																															
EP300	2033	MSKCC	GRCh37	22	41573608	41573608	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	179	853	0	ENST00000263253.7:c.5893A>G	p.Met1965Val	p.M1965V	ENST00000263253	NM_001429.3	1965	Atg/Gtg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	185	332	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
MLH1	4292	MSKCC	GRCh37	3	37090432	37090432	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	84	505	0	ENST00000231790.2:c.2027T>A	p.Leu676His	p.L676H	ENST00000231790	NM_000249.3	676	cTc/cAc																																																																															
MYD88	4615	MSKCC	GRCh37	3	38180365	38180365	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	52	818	0	ENST00000396334.3:c.213C>G	p.Tyr71Ter	p.Y71*	ENST00000396334	NM_002468.4	71	taC/taG																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934752	49934752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	154	719	1	ENST00000296474.3:c.2144G>A	p.Arg715Gln	p.R715Q	ENST00000296474	NM_002447.2	715	cGg/cAg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52597387	52597389	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	113	541	0	ENST00000394830.3:c.3921_3923del	p.Glu1307del	p.E1307del	ENST00000394830	NM_018313.4	1307	gaAGAt/gat																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52649393	52649393	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	129	543	0	ENST00000394830.3:c.1898A>G	p.Asp633Gly	p.D633G	ENST00000394830	NM_018313.4	633	gAc/gGc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52663007	52663007	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	55	268	0	ENST00000394830.3:c.1346A>G	p.Glu449Gly	p.E449G	ENST00000394830	NM_018313.4	449	gAg/gGg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682400	52682400	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	64	266	0	ENST00000394830.3:c.773del	p.Asn258MetfsTer25	p.N258Mfs*25	ENST00000394830	NM_018313.4	258	aAt/at																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502404	186502405	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	80	355	0	ENST00000323963.5:c.131_132delTC	p.Leu44ProfsTer10	p.L44Pfs*10	ENST00000323963		43	TCt/t																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1962801	1962801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	108	481	0	ENST00000382891.5:c.3295G>A	p.Glu1099Lys	p.E1099K	ENST00000382891	NM_133335.3	1099	Gag/Aag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	105	405	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521091	187521091	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	107	435	0	ENST00000441802.2:c.12064T>G	p.Cys4022Gly	p.C4022G	ENST00000441802	NM_005245.3	4022	Tgc/Ggc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630605	187630605	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	128	560	0	ENST00000441802.2:c.377del	p.Asn126IlefsTer20	p.N126Ifs*20	ENST00000441802	NM_005245.3	126	aAt/at																																																																															
TERT	7015	MSKCC	GRCh37	5	1264618	1264618	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	137	757	0	ENST00000310581.5:c.2744del	p.Gly915ValfsTer66	p.G915Vfs*66	ENST00000310581	NM_198253.2	915	gGt/gt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161240	56161240	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	73	371	1	ENST00000399503.3:c.1109C>A	p.Pro370His	p.P370H	ENST00000399503	NM_005921.1	370	cCt/cAt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56176582	56176582	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	109	346	0	ENST00000399503.3:c.2132A>G	p.Lys711Arg	p.K711R	ENST00000399503	NM_005921.1	711	aAa/aGa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79966113	79966114	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	83	357	0	ENST00000265081.6:c.781dup	p.Glu261GlyfsTer43	p.E261Gfs*43	ENST00000265081	NM_002439.4	259	-/G																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	96	377	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175969	112175970	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	41	259	0	ENST00000257430.4:c.4682dupA	p.Asp1562GlyfsTer5	p.D1562Gfs*5	ENST00000257430	NM_000038.5	1560	gaa/gAaa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	151	768	6	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681766	30681766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	149	604	0	ENST00000376406.3:c.331del	p.Val111Ter	p.V111*	ENST00000376406	NM_014641.2	111	Gtg/tg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166275	32166275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	150	682	0	ENST00000375023.3:c.4679C>T	p.Ala1560Val	p.A1560V	ENST00000375023	NM_004557.3	1560	gCg/gTg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	168	821	2	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
SESN1	27244	MSKCC	GRCh37	6	109415236	109415236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	171	620	0	ENST00000436639.2:c.41G>A	p.Cys14Tyr	p.C14Y	ENST00000436639	NM_014454.2	14	tGc/tAc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117706922	117706922	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	105	440	0	ENST00000368508.3:c.2228C>A	p.Pro743His	p.P743H	ENST00000368508	NM_002944.2	743	cCc/cAc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	133	693	4	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13949264	13949264	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	61	244	0	ENST00000405192.2:c.864del	p.Lys288AsnfsTer32	p.K288Nfs*32	ENST00000405192	NM_001163147.1	288	aaA/aa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467637	50467637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	86	406	2	ENST00000331340.3:c.872C>T	p.Thr291Met	p.T291M	ENST00000331340	NM_006060.4	291	aCg/aTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140482926	140482927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs777474487		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	88	520	0	ENST00000288602.6:c.1208dup	p.Ala404CysfsTer9	p.A404Cfs*9	ENST00000288602	NM_004333.4	403	cct/ccCt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151851177	151851177	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141966811		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	75	306	0	ENST00000262189.6:c.12194C>T	p.Ala4065Val	p.A4065V	ENST00000262189	NM_170606.2	4065	gCg/gTg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370885	55370885	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	126	639	0	ENST00000297316.4:c.187A>G	p.Lys63Glu	p.K63E	ENST00000297316	NM_022454.3	63	Aag/Gag																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	67	258	3	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971196	21971198	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	89	357	0	ENST00000304494.5:c.160_162delATG	p.Met54del	p.M54del	ENST00000304494	NM_000077.4	54	ATG/-																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231257	98231257	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	169	657	0	ENST00000331920.6:c.2026T>C	p.Tyr676His	p.Y676H	ENST00000331920	NM_000264.3	676	Tac/Cac																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127912128	127912128	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	70	309	0	ENST00000373547.4:c.742T>C	p.Phe248Leu	p.F248L	ENST00000373547	NM_002721.4	248	Ttt/Ctt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028857	47028857	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	124	682	1	ENST00000329236.7:c.161A>G	p.Lys54Arg	p.K54R	ENST00000329236	NM_001204466.1	54	aAg/aGg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	180	843	0	ENST00000220592.5:c.1807G>C	p.Ala603Pro	p.A603P	ENST00000220592	NM_012154.3	603	Gcc/Ccc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026450	6026450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	21	78	0	ENST00000265849.7:c.1946G>T	p.Arg649Met	p.R649M	ENST00000265849	NM_000535.5	649	aGg/aTg																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15833927	15833927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	10	40	0	ENST00000307771.7:c.685G>A	p.Glu229Lys	p.E229K	ENST00000307771	NM_005089.3	229	Gag/Aag																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554343	141554344	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	169	843	0	ENST00000220592.5:c.1807_1808insA	p.Ala603AspfsTer71	p.A603Dfs*71	ENST00000220592	NM_012154.3	603	gcc/gAcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0038555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	38	426	1	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	24	621	0	ENST00000269305.4:c.645T>G	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380262	25380262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	39	439	0	ENST00000256078.4:c.196G>T	p.Ala66Ser	p.A66S	ENST00000256078	NM_033360.2	66	Gca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0038556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	284	657	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279573	123279573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	201	630	0	ENST00000358487.5:c.859C>T	p.His287Tyr	p.H287Y	ENST00000358487	NM_000141.4	287	Cac/Tac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343547	118343547	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	83	343	0	ENST00000534358.1:c.1673C>A	p.Ser558Tyr	p.S558Y	ENST00000534358	NM_005933.3	558	tCc/tAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133219414	133219414	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	435	697	0	ENST00000320574.5:c.4720G>T	p.Ala1574Ser	p.A1574S	ENST00000320574	NM_006231.2	1574	Gcc/Tcc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984532	72984532	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	178	666	1	ENST00000268489.5:c.3052A>G	p.Ile1018Val	p.I1018V	ENST00000268489	NM_006885.3	1018	Atc/Gtc																																																																															
GNA11	2767	MSKCC	GRCh37	19	3119034	3119034	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	114	651	0	ENST00000078429.4:c.718G>C	p.Val240Leu	p.V240L	ENST00000078429	NM_002067.2	240	Gtg/Ctg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599884	10599884	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	338	735	0	ENST00000171111.5:c.1692del	p.Arg565GlufsTer30	p.R565Efs*30	ENST00000171111	NM_203500.1	564	ggG/gg																																																																															
NF2	4771	MSKCC	GRCh37	22	30035203	30035203	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0038556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	55	414	0	ENST00000338641.4:c.363+2T>C		p.X121_splice	ENST00000338641	NM_000268.3	121																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178928010	178928010	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	27	332	1	ENST00000263967.3:c.1288T>C	p.Phe430Leu	p.F430L	ENST00000263967	NM_006218.2	430	Ttt/Ctt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332838	153332838	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	277	360	0	ENST00000281708.4:c.118G>T	p.Glu40Ter	p.E40*	ENST00000281708	NM_033632.3	40	Gaa/Taa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679879	30679879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	294	447	0	ENST00000376406.3:c.1840G>A	p.Val614Ile	p.V614I	ENST00000376406	NM_014641.2	614	Gtt/Att																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969906	161969906	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	283	516	0	ENST00000366898.1:c.1063G>T	p.Gly355Cys	p.G355C	ENST00000366898	NM_004562.2	355	Ggc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	78	421	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	17	301	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0038684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	13	560	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395776	45395776	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	28	365	0	ENST00000262160.6:c.358C>T	p.Arg120Ter	p.R120*	ENST00000262160	NM_005901.5	120	Cga/Tga																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981167	201981168	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	148	841	0	ENST00000359651.3:c.248dup	p.Asn83LysfsTer9	p.N83Kfs*9	ENST00000359651		82	-/A																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562621	21562621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	202	394	0	ENST00000382592.4:c.1298C>T	p.Thr433Met	p.T433M	ENST00000382592	NM_014572.2	433	aCg/aTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119871	70119872	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	131	743	0	ENST00000245479.2:c.875dup	p.Asn292LysfsTer4	p.N292Kfs*4	ENST00000245479	NM_000346.3	291	-/A																																																																															
APC	324	MSKCC	GRCh37	5	112173597	112173597	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0038684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	64	271	0	ENST00000257430.4:c.2306T>G	p.Leu769Ter	p.L769*	ENST00000257430	NM_000038.5	769	tTa/tGa																																																																															
APC	324	MSKCC	GRCh37	5	112175763	112175764	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	G			P-0038684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	40	340	0	ENST00000257430.4:c.4472_4473delinsG	p.Phe1491TrpfsTer16	p.F1491Wfs*16	ENST00000257430	NM_000038.5	1491	tTT/tG																																																																															
FLT3	2322	MSKCC	GRCh37	13	28578254	28578254	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs191501493		P-0038724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	198	636	1	ENST00000241453.7:c.2917C>T	p.Arg973Ter	p.R973*	ENST00000241453	NM_004119.2	973	Cga/Tga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	144	420	0	ENST00000250448.2:c.781C>G	p.Arg261Gly	p.R261G	ENST00000250448	NM_004496.3	261	Cgc/Ggc																																																																															
CDH1	999	MSKCC	GRCh37	16	68867222	68867223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	193	623	0	ENST00000261769.5:c.2470dupG	p.Ala824GlyfsTer5	p.A824Gfs*5	ENST00000261769	NM_004360.3	823	-/G																																																																															
YES1	7525	MSKCC	GRCh37	18	743029	743029	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	220	694	0	ENST00000314574.4:c.949T>G	p.Phe317Val	p.F317V	ENST00000314574	NM_005433.3	317	Ttc/Gtc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928219	178928219	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	315	518	0	ENST00000263967.3:c.1405G>A	p.Glu469Lys	p.E469K	ENST00000263967	NM_006218.2	469	Gaa/Aaa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	183	724	1	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636777	8636777	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	203	693	0	ENST00000356435.5:c.132C>G	p.Ile44Met	p.I44M	ENST00000356435		44	atC/atG																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0038726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	43	374	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121913255		P-0038726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	159	720	0	ENST00000369535.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0038726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	157	822	0	ENST00000269305.4:c.919+1G>C		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
SOX9	6662	MSKCC	GRCh37	17	70120100	70120100	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	13	76	0	ENST00000245479.2:c.1102C>T	p.Gln368Ter	p.Q368*	ENST00000245479	NM_000346.3	368	Cag/Tag																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87636257	87636257	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	125	644	1	ENST00000277120.3:c.2422C>T	p.Arg808Ter	p.R808*	ENST00000277120		808	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591246	67591246	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0038740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	28	412	1	ENST00000274335.5:c.1746-2A>G		p.X582_splice	ENST00000274335		582																																																																																
ELF3	1999	MSKCC	GRCh37	1	201984340	201984340	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	214	635	0	ENST00000359651.3:c.1005C>A	p.Tyr335Ter	p.Y335*	ENST00000359651		335	taC/taA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860349	151860349	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	101	573	0	ENST00000262189.6:c.10313G>C	p.Gly3438Ala	p.G3438A	ENST00000262189	NM_170606.2	3438	gGc/gCc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5068999	5069071	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTTATAATTAAACTTATACAGCGAGAAAATGTCATTGAATATAAACACTGTTTGATTACAAAAAATGAGAA	TCTTTATAATTAAACTTATACAGCGAGAAAATGTCATTGAATATAAACACTGTTTGATTACAAAAAATGAGAA	-			P-0038740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	34	213	0	ENST00000381652.3:c.1327-22_1377del		p.X443_splice	ENST00000381652	NM_004972.3	443																																																																																
TP53	7157	MSKCC	GRCh37	17	7579309	7579320	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACCGTGCAAGT	GACCGTGCAAGT	-			P-0038740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	222	604	0	ENST00000269305.4:c.368_375+4del		p.X123_splice	ENST00000269305	NM_001126112.2	123																																																																																
TP53	7157	MSKCC	GRCh37	17	7578437	7578438	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0038743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1115	94	885	1	ENST00000269305.4:c.492_493del	p.Gln165ValfsTer15	p.Q165Vfs*15	ENST00000269305	NM_001126112.2	164	aaGCag/aaag																																																																															
HGF	3082	MSKCC	GRCh37	7	81346592	81346592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	168	485	0	ENST00000222390.5:c.1361C>T	p.Thr454Met	p.T454M	ENST00000222390	NM_000601.4	454	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578448	7578448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	345	963	0	ENST00000269305.4:c.482C>A	p.Ala161Asp	p.A161D	ENST00000269305	NM_001126112.2	161	gCc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	104	379	0	ENST00000257430.4:c.4063del	p.Ser1355LeufsTer60	p.S1355Lfs*60	ENST00000257430	NM_000038.5	1354	Ttt/tt																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2489802	2489802	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	338	830	0	ENST00000355716.4:c.199T>A	p.Cys67Ser	p.C67S	ENST00000355716	NM_003820.2	67	Tgc/Agc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640323	3640323	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200057338		P-0038747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1487	185	1018	0	ENST00000294008.3:c.3316G>A	p.Val1106Met	p.V1106M	ENST00000294008	NM_032444.2	1106	Gtg/Atg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0038753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	217	543	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0038753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	190	325	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778488	3778488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	122	864	0	ENST00000262367.5:c.6560C>T	p.Pro2187Leu	p.P2187L	ENST00000262367	NM_004380.2	2187	cCa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577125	7577126	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	295	693	0	ENST00000269305.4:c.812dup	p.Val272GlyfsTer34	p.V272Gfs*34	ENST00000269305	NM_001126112.2	271	gag/gaAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711259	114711259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	71	361	1	ENST00000543371.1:c.274G>A	p.Gly92Arg	p.G92R	ENST00000543371	NM_001198531.1	92	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0038757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	127	694	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0038757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	95	510	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528739	157528770	+	frameshift_variant	Frame_Shift_Del	DEL	GCATTGGAAACTTGATAAGCTTCCTAGAGGAT	GCATTGGAAACTTGATAAGCTTCCTAGAGGAT	-			P-0038757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	100	599	0	ENST00000346085.5:c.6465_6496del	p.Ser2155ArgfsTer26	p.S2155Rfs*26	ENST00000346085	NM_020732.3	2155	aGCATTGGAAACTTGATAAGCTTCCTAGAGGAT/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0038760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	256	613	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14303242	14303242	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	59	619	0	ENST00000256196.4:c.433T>G	p.Leu145Val	p.L145V	ENST00000256196		145	Tta/Gta																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141470	11141475	+	inframe_deletion	In_Frame_Del	DEL	CTTCAT	CTTCAT	-			P-0038760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	73	616	0	ENST00000344626.4:c.3451_3456del	p.Ile1151_Phe1152del	p.I1151_F1152del	ENST00000344626	NM_003072.3	1149	taCTTCATc/tac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524879	187524879	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	211	611	0	ENST00000441802.2:c.10801G>T	p.Ala3601Ser	p.A3601S	ENST00000441802	NM_005245.3	3601	Gca/Tca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405249	139405269	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTCTGCCCTGCGGGGCAGG	AGGTCTGCCCTGCGGGGCAGG	-			P-0038760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	57	516	0	ENST00000277541.6:c.2588-12_2596del		p.X863_splice	ENST00000277541	NM_017617.3	863																																																																																
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0038763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	151	665	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032092	10032092	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201674066		P-0038763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	118	744	0	ENST00000330684.3:c.731G>A	p.Arg244His	p.R244H	ENST00000330684	NM_001134407.1	244	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108196051	108196051	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	68	436	0	ENST00000278616.4:c.6587G>C	p.Arg2196Thr	p.R2196T	ENST00000278616	NM_000051.3	2196	aGa/aCa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891296	101891296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	156	748	0	ENST00000374994.4:c.257G>A	p.Cys86Tyr	p.C86Y	ENST00000374994	NM_004612.2	86	tGt/tAt																																																																															
ALK	238	MSKCC	GRCh37	2	29443631	29443631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	178	657	1	ENST00000389048.3:c.3586C>A	p.Leu1196Met	p.L1196M	ENST00000389048	NM_004304.4	1196	Ctg/Atg																																																																															
CIC	23152	MSKCC	GRCh37	19	42794598	42794598	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	72	748	0	ENST00000575354.2:c.1678C>T	p.Gln560Ter	p.Q560*	ENST00000575354	NM_015125.3	560	Cag/Tag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118352625	118352625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	66	477	1	ENST00000534358.1:c.3830C>T	p.Ser1277Leu	p.S1277L	ENST00000534358	NM_005933.3	1277	tCg/tTg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665410	138665410	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	102	721	0	ENST00000330315.3:c.155C>A	p.Ala52Glu	p.A52E	ENST00000330315	NM_023067.3	52	gCg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0038774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	415	695	1	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
RB1	5925	MSKCC	GRCh37	13	48947585	48947585	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	75	386	0	ENST00000267163.4:c.1172C>G	p.Ser391Ter	p.S391*	ENST00000267163	NM_000321.2	391	tCa/tGa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221785	55221787	+	missense_variant	Missense_Mutation	ONP	ATG	ATG	GAA			P-0038774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	2421	696	0	ENST00000275493.2:c.829_831delinsGAA	p.Met277Glu	p.M277E	ENST00000275493	NM_005228.3	277	ATG/GAA																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339207	65339207	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0038833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	22	303	0	ENST00000342505.4:c.330-1G>C		p.X110_splice	ENST00000342505	NM_002227.2	110																																																																																
STK11	6794	MSKCC	GRCh37	19	1223049	1223634	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGACCGGTGGCGCAGCATGACTGTGGTGCCGTACTTGGAGGACCTGCACGGCGCGGACGAGGACGAGGACCTCTTCGACATCGAGGATGACATCATCTACACTCAGGACTTCACGGTGCCCGGTGAGTCTGGCGGGGGCCCCTGCCCGGCTCTGCTGACTCGGCCAGGATGTCCCACGGGAGCAGGGTGCCTGCCTGTCTGCAACAAGGACAGCTTCTGCCCTCTGGTGGCCAATCCCACGTCCCCAAAGCCTCCAGCCCACCTGCAGGCTGCCTCCGCCCTGCGGGCCGCTGGGACATGGCTGAAAGGTGTGGGGTCAGCGGGGGCACCAGCCCAGGCCTGTCTGGCCAGGAGGGTTCCTCAGGCGTCTCTCCGGGTGCTGCCCAGCCAGGCACCACCCACCGGCCTTGGCCTGAGTCCCAGCAGGAGCAGGCGGGGGAGCCCCAGGGTCGGGGGAGGGTAGGTGAGAGTCAGGGTGCAGGGTGGCCCCTCAGACAGCTGGCATGAGAGAGGGTCCAGTGGCCCTCCCTCCCGTCGTCCCTGAGGCCTGCCCGCTGGCCCTGATGCCGGCCGCCCTTCTTCCCT	AGGACCGGTGGCGCAGCATGACTGTGGTGCCGTACTTGGAGGACCTGCACGGCGCGGACGAGGACGAGGACCTCTTCGACATCGAGGATGACATCATCTACACTCAGGACTTCACGGTGCCCGGTGAGTCTGGCGGGGGCCCCTGCCCGGCTCTGCTGACTCGGCCAGGATGTCCCACGGGAGCAGGGTGCCTGCCTGTCTGCAACAAGGACAGCTTCTGCCCTCTGGTGGCCAATCCCACGTCCCCAAAGCCTCCAGCCCACCTGCAGGCTGCCTCCGCCCTGCGGGCCGCTGGGACATGGCTGAAAGGTGTGGGGTCAGCGGGGGCACCAGCCCAGGCCTGTCTGGCCAGGAGGGTTCCTCAGGCGTCTCTCCGGGTGCTGCCCAGCCAGGCACCACCCACCGGCCTTGGCCTGAGTCCCAGCAGGAGCAGGCGGGGGAGCCCCAGGGTCGGGGGAGGGTAGGTGAGAGTCAGGGTGCAGGGTGGCCCCTCAGACAGCTGGCATGAGAGAGGGTCCAGTGGCCCTCCCTCCCGTCGTCCCTGAGGCCTGCCCGCTGGCCCTGATGCCGGCCGCCCTTCTTCCCT	-			P-0038833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	90	616	0	ENST00000326873.7:c.989_1108+466del		p.X330_splice	ENST00000326873	NM_000455.4	330																																																																																
TCF3	6929	MSKCC	GRCh37	19	1611829	1611829	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	74	548	0	ENST00000344749.5:c.1833A>T	p.Lys611Asn	p.K611N	ENST00000344749	NM_001136139.2	611	aaA/aaT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600038	10600066	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGACGCCTAAAGGGCACCATGCAGAGAA	CAGACGCCTAAAGGGCACCATGCAGAGAA	-			P-0038833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	182	570	0	ENST00000171111.5:c.1532-22_1538del		p.X511_splice	ENST00000171111	NM_203500.1	511																																																																																
PIK3R2	5296	MSKCC	GRCh37	19	18266826	18266826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	62	490	0	ENST00000222254.8:c.137G>T	p.Gly46Val	p.G46V	ENST00000222254	NM_005027.3	46	gGt/gTt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733240	40733240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	61	529	0	ENST00000373198.4:c.3566C>A	p.Thr1189Lys	p.T1189K	ENST00000373198	NM_133170.3	1189	aCa/aAa																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72897431	72897431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	49	362	0	ENST00000325599.8:c.61G>C	p.Val21Leu	p.V21L	ENST00000325599	NM_018130.2	21	Gtg/Ctg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31495424	31495424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	43	527	0	ENST00000344624.3:c.1724G>A	p.Arg575Gln	p.R575Q	ENST00000344624		575	cGg/cAg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867505	35867505	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	22	292	0	ENST00000303115.3:c.319A>G	p.Ile107Val	p.I107V	ENST00000303115	NM_002185.3	107	Ata/Gta																																																																															
PMS2	5395	MSKCC	GRCh37	7	6037056	6037056	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0038833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	25	285	0	ENST00000265849.7:c.706-2A>C		p.X236_splice	ENST00000265849	NM_000535.5	236																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0038834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	109	493	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627438	37627447	+	frameshift_variant	Frame_Shift_Del	DEL	AAAATTGGAA	AAAATTGGAA	-			P-0038834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	74	464	0	ENST00000447079.4:c.1356_1365del	p.Lys452AsnfsTer9	p.K452Nfs*9	ENST00000447079	NM_015083.1	451	gtAAAATTGGAA/gt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267260	41267260	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	42	325	0	ENST00000349496.5:c.844A>T	p.Met282Leu	p.M282L	ENST00000349496	NM_001904.3	282	Atg/Ttg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44920597	44920597	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	72	308	0	ENST00000377967.4:c.1358A>T	p.His453Leu	p.H453L	ENST00000377967	NM_021140.2	453	cAt/cTt																																																																															
MYC	4609	MSKCC	GRCh37	8	128750924	128750924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029272-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			466	421	648	0	ENST00000377970.2:c.461C>T	p.Ser154Leu	p.S154L	ENST00000377970	NM_002467.4	154	tCg/tTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786705	3786705	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029272-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			532	472	751	0	ENST00000262367.5:c.4506G>C	p.Trp1502Cys	p.W1502C	ENST00000262367	NM_004380.2	1502	tgG/tgC																																																																															
TSC2	7249	MSKCC	GRCh37	16	2104325	2104327	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0029272-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			422	411	624	0	ENST00000219476.3:c.369_371del	p.Phe124del	p.F124del	ENST00000219476	NM_000548.3	122	cTCTtc/ctc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779826	3779826	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029272-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			525	517	791	0	ENST00000262367.5:c.5222A>T	p.Lys1741Met	p.K1741M	ENST00000262367	NM_004380.2	1741	aAg/aTg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575147	64575147	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029272-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			429	383	531	0	ENST00000337652.1:c.675G>C	p.Trp225Cys	p.W225C	ENST00000337652	NM_130803.2	225	tgG/tgC																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514385	103514385	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029272-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			389	193	264	0	ENST00000355739.4:c.886C>G	p.Gln296Glu	p.Q296E	ENST00000355739	NM_000123.3	296	Caa/Gaa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046477	30046477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029272-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			849	364	595	0	ENST00000331968.5:c.2706G>C	p.Met902Ile	p.M902I	ENST00000331968	NM_002742.2	902	atG/atC																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713480	40713480	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029272-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			934	448	703	0	ENST00000373198.4:c.4035G>C	p.Gln1345His	p.Q1345H	ENST00000373198	NM_133170.3	1345	caG/caC																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729885	30729886	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029272-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			308	229	408	0	ENST00000359013.4:c.1483dup	p.Tyr495LeufsTer2	p.Y495Lfs*2	ENST00000359013	NM_001024847.2	494	gat/gaTt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289211	33289211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029272-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			455	384	598	0	ENST00000374542.5:c.341del	p.Ser114PhefsTer30	p.S114Ffs*30	ENST00000374542	NM_001141970.1	114	tCt/tt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			259	112	435	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			313	71	651	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948385	71948385	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138023922		P-0033490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			355	129	1003	1	ENST00000298229.2:c.3097C>T	p.Arg1033Cys	p.R1033C	ENST00000298229	NM_001567.3	1033	Cgt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254718	16254718	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			440	166	812	0	ENST00000375759.3:c.1983G>A	p.Trp661Ter	p.W661*	ENST00000375759	NM_015001.2	661	tgG/tgA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874981	151874982	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0033490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			212	90	325	0	ENST00000262189.6:c.7556_7557del	p.Ser2519CysfsTer5	p.S2519Cfs*5	ENST00000262189	NM_170606.2	2519	tCT/t																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	649	457	3	ENST00000250448.2:c.781C>T	p.Arg261Cys	p.R261C	ENST00000250448	NM_004496.3	261	Cgc/Tgc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026308	48026308	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	210	453	0	ENST00000234420.5:c.1186C>G	p.Leu396Val	p.L396V	ENST00000234420	NM_000179.2	396	Ctc/Gtc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426656	121426656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	279	754	0	ENST00000257555.6:c.347C>T	p.Ala116Val	p.A116V	ENST00000257555		116	gCg/gTg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37646847	37646847	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	286	632	1	ENST00000447079.4:c.1969G>T	p.Glu657Ter	p.E657*	ENST00000447079	NM_015083.1	657	Gag/Tag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657663	37657671	+	inframe_deletion	In_Frame_Del	DEL	TAAGTGTTC	TAAGTGTTC	-			P-0038404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	410	531	0	ENST00000447079.4:c.2583_2591del	p.Lys861_Ser863del	p.K861_S863del	ENST00000447079	NM_015083.1	860	atTAAGTGTTCt/att																																																																															
PAX5	5079	MSKCC	GRCh37	9	37002738	37002738	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	264	578	7	ENST00000358127.4:c.511A>G	p.Ser171Gly	p.S171G	ENST00000358127	NM_001280556.1	171	Agc/Ggc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	57	475	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044541	47044548	+	frameshift_variant	Frame_Shift_Del	DEL	CGAGATGA	CGAGATGA	-			P-0038428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	57	892	0	ENST00000329236.7:c.1809_1816del	p.Asp603GlufsTer36	p.D603Efs*36	ENST00000329236	NM_001204466.1	602	CGAGATGAc/c																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048168	180048168	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	71	900	1	ENST00000261937.6:c.2105C>A	p.Ala702Asp	p.A702D	ENST00000261937	NM_182925.4	702	gCc/gAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120753	115120753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	58	715	0	ENST00000257566.3:c.253G>A	p.Ala85Thr	p.A85T	ENST00000257566	NM_016569.3	85	Gcg/Acg																																																																															
ATM	472	MSKCC	GRCh37	11	108198421	108198422	+	missense_variant	Missense_Mutation	DNP	GC	GC	AG			P-0038428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	49	541	2	ENST00000278616.4:c.7025_7026delinsAG	p.Gly2342Glu	p.G2342E	ENST00000278616	NM_000051.3	2342	gGC/gAG																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112892378	112892378	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	47	568	0	ENST00000351677.2:c.536A>T	p.Tyr179Phe	p.Y179F	ENST00000351677	NM_002834.3	179	tAc/tTc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134326	41134326	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	43	642	0	ENST00000379561.5:c.1302G>T	p.Leu434Phe	p.L434F	ENST00000379561	NM_002015.3	434	ttG/ttT																																																																															
ALK	238	MSKCC	GRCh37	2	29448372	29448372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	93	984	0	ENST00000389048.3:c.3127G>T	p.Ala1043Ser	p.A1043S	ENST00000389048	NM_004304.4	1043	Gcc/Tcc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561170	9561170	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	41	535	0	ENST00000353224.5:c.612C>A	p.Asp204Glu	p.D204E	ENST00000353224	NM_177990.2	204	gaC/gaA																																																																															
PPARG	5468	MSKCC	GRCh37	3	12421279	12421279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	94	808	0	ENST00000287820.6:c.159G>T	p.Met53Ile	p.M53I	ENST00000287820	NM_015869.4	53	atG/atT																																																																															
KDR	3791	MSKCC	GRCh37	4	55946287	55946287	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	51	432	0	ENST00000263923.4:c.3892G>T	p.Gly1298Cys	p.G1298C	ENST00000263923	NM_002253.2	1298	Ggc/Tgc																																																																															
TET2	54790	MSKCC	GRCh37	4	106157972	106157972	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	46	439	1	ENST00000380013.4:c.2873A>T	p.Gln958Leu	p.Q958L	ENST00000380013	NM_001127208.2	958	cAg/cTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638653	176638653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	86	840	0	ENST00000439151.2:c.3253C>T	p.Pro1085Ser	p.P1085S	ENST00000439151	NM_022455.4	1085	Cct/Tct																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652238	48652238	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	53	827	1	ENST00000376670.3:c.909G>T	p.Gln303His	p.Q303H	ENST00000376670	NM_002049.3	303	caG/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0038429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	89	817	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	180	548	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0038429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	77	805	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0038429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	310	909	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952152	178952152	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0038429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	107	306	0	ENST00000263967.3:c.3207A>G	p.Ter1069TrpextTer4	p.*1069Wext*4	ENST00000263967	NM_006218.2	1069	tgA/tgG																																																																															
APC	324	MSKCC	GRCh37	5	112175818	112175893	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGG	GAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGG	-			P-0038429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	220	363	0	ENST00000257430.4:c.4527_4602del	p.Ser1510MetfsTer30	p.S1510Mfs*30	ENST00000257430	NM_000038.5	1509	ctGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGG/ct																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056053	26056067	+	inframe_deletion	In_Frame_Del	DEL	CCTTGGGCTTAGCGG	CCTTGGGCTTAGCGG	-	rs756916945		P-0038433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	118	497	0	ENST00000343677.2:c.590_604del	p.Ala197_Lys201del	p.A197_K201del	ENST00000343677	NM_005319.3	197	gCCGCTAAGCCCAAGGtt/gtt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25964923	25964923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	150	594	0	ENST00000435504.4:c.4283G>A	p.Cys1428Tyr	p.C1428Y	ENST00000435504		1428	tGc/tAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49439852	49439889	+	frameshift_variant	Frame_Shift_Del	DEL	AGGCTTTACCACGTAGGGCTGGCAGGAGACACAGTCAA	AGGCTTTACCACGTAGGGCTGGCAGGAGACACAGTCAA	-			P-0038437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	356	858	0	ENST00000301067.7:c.4652_4689del	p.Phe1551CysfsTer39	p.F1551Cfs*39	ENST00000301067	NM_003482.3	1551	tTTGACTGTGTCTCCTGCCAGCCCTACGTGGTAAAGCCT/t																																																																															
BRCA2	675	MSKCC	GRCh37	13	32950922	32950922	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	362	684	0	ENST00000380152.3:c.8748C>G	p.Tyr2916Ter	p.Y2916*	ENST00000380152		2916	taC/taG																																																																															
TP53	7157	MSKCC	GRCh37	17	7579484	7579491	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGGCAT	TCTGGCAT	-			P-0038437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	231	873	0	ENST00000269305.4:c.196_203del	p.Met66GlyfsTer80	p.M66Gfs*80	ENST00000269305	NM_001126112.2	66	ATGCCAGAg/g																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11136172	11136172	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	410	822	0	ENST00000344626.4:c.3156C>G	p.Phe1052Leu	p.F1052L	ENST00000344626	NM_003072.3	1052	ttC/ttG																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288653	15288864	+	frameshift_variant	Frame_Shift_Del	DEL	AGCGCAGCGGAAGAAGGGCGCGAGCGGCGCGGGGCGGCAGGAGCCCCCGTGGAGACAGGGGGCGGCCGCGCAGCTGGCGTTGCTGGCCCCCGGCGGCGACCCCGGGAAGCTGCGGCAGGAGGGTCCCGACAACCCTGGGGGGCAGGCGCAGCGCGGCCCGCGGGGCGTCTGCTGGCATGGGACGCCCACCGGGCACTGCAGCTCCCGGCAGG	AGCGCAGCGGAAGAAGGGCGCGAGCGGCGCGGGGCGGCAGGAGCCCCCGTGGAGACAGGGGGCGGCCGCGCAGCTGGCGTTGCTGGCCCCCGGCGGCGACCCCGGGAAGCTGCGGCAGGAGGGTCCCGACAACCCTGGGGGGCAGGCGCAGCGCGGCCCGCGGGGCGTCTGCTGGCATGGGACGCCCACCGGGCACTGCAGCTCCCGGCAGG	-			P-0038437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			0	57	20	0	ENST00000263388.2:c.3875_4086del	p.Ser1292LeufsTer200	p.S1292Lfs*200	ENST00000263388	NM_000435.2	1292	tCCTGCCGGGAGCTGCAGTGCCCGGTGGGCGTCCCATGCCAGCAGACGCCCCGCGGGCCGCGCTGCGCCTGCCCCCCAGGGTTGTCGGGACCCTCCTGCCGCAGCTTCCCGGGGTCGCCGCCGGGGGCCAGCAACGCCAGCTGCGCGGCCGCCCCCTGTCTCCACGGGGGCTCCTGCCGCCCCGCGCCGCTCGCGCCCTTCTTCCGCTGCGCT/t																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138376596	138376596	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	342	752	0	ENST00000289153.2:c.2878C>G	p.Leu960Val	p.L960V	ENST00000289153	NM_006219.2	960	Ctt/Gtt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0038484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	112	321	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120469187	120469187	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	159	514	0	ENST00000256646.2:c.3940C>G	p.Leu1314Val	p.L1314V	ENST00000256646	NM_024408.3	1314	Ctg/Gtg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717733	89717733	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	46	426	0	ENST00000371953.3:c.758T>C	p.Ile253Thr	p.I253T	ENST00000371953	NM_000314.4	253	aTc/aCc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24167533	24167533	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	190	574	0	ENST00000263121.7:c.917A>G	p.Glu306Gly	p.E306G	ENST00000263121	NM_003073.3	306	gAg/gGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	98	628	0	ENST00000269305.4:c.568C>T	p.Pro190Ser	p.P190S	ENST00000269305	NM_001126112.2	190	Cct/Tct																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52702552	52702552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	72	421	0	ENST00000394830.3:c.346T>C	p.Phe116Leu	p.F116L	ENST00000394830	NM_018313.4	116	Ttc/Ctc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710650	117710650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	71	347	0	ENST00000368508.3:c.1622G>T	p.Gly541Val	p.G541V	ENST00000368508	NM_002944.2	541	gGg/gTg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922749	44922750	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	90	213	0	ENST00000377967.4:c.1611dup	p.Val538SerfsTer15	p.V538Sfs*15	ENST00000377967	NM_021140.2	537	tca/tcAa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0038585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	65	304	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519886		P-0038585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	17	311	0	ENST00000349496.5:c.97T>C	p.Ser33Pro	p.S33P	ENST00000349496	NM_001904.3	33	Tct/Cct																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938400	44938400	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	54	151	0	ENST00000377967.4:c.2951del	p.Phe984SerfsTer15	p.F984Sfs*15	ENST00000377967	NM_021140.2	983	cTt/ct																																																																															
MED12	9968	MSKCC	GRCh37	X	70349257	70349258	+	missense_variant	Missense_Mutation	DNP	TC	TC	GT			P-0038585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	55	325	0	ENST00000374080.3:c.3669_3670delinsGT	p.Leu1224Phe	p.L1224F	ENST00000374080		1223	gtTCtc/gtGTtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	62	594	1	ENST00000269305.4:c.734G>C	p.Gly245Ala	p.G245A	ENST00000269305	NM_001126112.2	245	gGc/gCc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221162	5221162	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	44	684	0	ENST00000357368.4:c.3304C>G	p.Arg1102Gly	p.R1102G	ENST00000357368	NM_002850.3	1102	Cgc/Ggc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18274087	18274087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	45	555	0	ENST00000222254.8:c.1305G>T	p.Lys435Asn	p.K435N	ENST00000222254	NM_005027.3	435	aaG/aaT																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111695	56111695	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	25	137	0	ENST00000399503.3:c.295G>C	p.Ala99Pro	p.A99P	ENST00000399503	NM_005921.1	99	Gcg/Ccg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123179209	123179209	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	17	349	0	ENST00000218089.9:c.658A>T	p.Thr220Ser	p.T220S	ENST00000218089	NM_001042749.1	220	Acc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0038656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	64	451	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	74	444	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0038656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	105	715	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
RPS6KB2	6199	MSKCC	GRCh37	11	67198986	67198986	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	60	393	1	ENST00000312629.5:c.457G>A	p.Gly153Ser	p.G153S	ENST00000312629	NM_003952.2	153	Ggt/Agt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974762	21974768	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGCCG	CGGGCCG	-			P-0038656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	61	278	0	ENST00000304494.5:c.59_65del	p.Ala20GlyfsTer4	p.A20Gfs*4	ENST00000304494	NM_000077.4	20	gCGGCCCGg/gg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0038658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	98	231	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0038658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	401	208	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31374390	31374390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	48	211	0	ENST00000328111.2:c.389G>A	p.Arg130His	p.R130H	ENST00000328111	NM_006892.3	130	cGc/cAc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523285	9523285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	87	247	0	ENST00000353224.5:c.1952C>T	p.Ala651Val	p.A651V	ENST00000353224	NM_177990.2	651	gCg/gTg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63819026	63819026	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	34	174	0	ENST00000279873.7:c.1073C>G	p.Ala358Gly	p.A358G	ENST00000279873	NM_032199.2	358	gCt/gGt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608225	28608225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	75	250	0	ENST00000241453.7:c.1831G>A	p.Glu611Lys	p.E611K	ENST00000241453	NM_004119.2	611	Gag/Aag																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004489	150004489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	131	252	0	ENST00000253339.5:c.1736C>T	p.Pro579Leu	p.P579L	ENST00000253339		579	cCt/cTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0038661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	69	455	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732533	74732533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	19	251	0	ENST00000359995.5:c.376C>T	p.Arg126Cys	p.R126C	ENST00000359995	NM_001195427.1	126	Cgc/Tgc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061621	38061621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	53	400	0	ENST00000250448.2:c.368C>T	p.Ser123Phe	p.S123F	ENST00000250448	NM_004496.3	123	tCc/tTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160643	56160658	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGTGTTAACAAAGT	GCCGTGTTAACAAAGT	-			P-0038661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	50	481	0	ENST00000399503.3:c.918_933del	p.Arg307CysfsTer11	p.R307Cfs*11	ENST00000399503	NM_005921.1	306	cGCCGTGTTAACAAAGTg/cg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184057	56184057	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	64	344	0	ENST00000399503.3:c.4262T>G	p.Leu1421Arg	p.L1421R	ENST00000399503	NM_005921.1	1421	cTa/cGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0038664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	86	384	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68857311	68857312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	60	396	0	ENST00000261769.5:c.1947dup	p.Ile650TyrfsTer13	p.I650Yfs*13	ENST00000261769	NM_004360.3	649	tct/tcTt																																																																															
TET1	80312	MSKCC	GRCh37	10	70333432	70333432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	68	745	0	ENST00000373644.4:c.1337C>T	p.Pro446Leu	p.P446L	ENST00000373644	NM_030625.2	446	cCt/cTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0038675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	50	337	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0038675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	79	796	1	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747342068		P-0038679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	524	848	0	ENST00000269305.4:c.394A>G	p.Lys132Glu	p.K132E	ENST00000269305	NM_001126112.2	132	Aag/Gag																																																																															
WT1	7490	MSKCC	GRCh37	11	32439124	32439124	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	247	488	0	ENST00000332351.3:c.949G>A	p.Gly317Arg	p.G317R	ENST00000332351	NM_024426.4	317	Gga/Aga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254807	16254807	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	339	565	0	ENST00000375759.3:c.2072A>G	p.Asp691Gly	p.D691G	ENST00000375759	NM_015001.2	691	gAt/gGt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210505	5210505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	45	625	0	ENST00000357368.4:c.5462G>A	p.Arg1821Gln	p.R1821Q	ENST00000357368	NM_002850.3	1821	cGa/cAa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259229	89259229	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	141	420	0	ENST00000336596.2:c.373A>G	p.Met125Val	p.M125V	ENST00000336596	NM_005233.5	125	Atg/Gtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0038681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	48	399	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	90	668	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	44	409	0	ENST00000263967.3:c.1034A>C	p.Asn345Thr	p.N345T	ENST00000263967	NM_006218.2	345	aAt/aCt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119741	70119741	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	35	872	0	ENST00000245479.2:c.743G>C	p.Gly248Ala	p.G248A	ENST00000245479	NM_000346.3	248	gGc/gCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	50	385	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0038682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	45	480	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	42	610	2	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
CD79A	973	MSKCC	GRCh37	19	42383144	42383144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	30	699	1	ENST00000221972.3:c.164C>T	p.Pro55Leu	p.P55L	ENST00000221972	NM_021601.3	55	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112175749	112175756	+	frameshift_variant	Frame_Shift_Del	DEL	TACTTTAT	TACTTTAT	-			P-0038682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	22	287	0	ENST00000257430.4:c.4461_4468delTTTATTAC	p.Leu1488PhefsTer23	p.L1488Ffs*23	ENST00000257430	NM_000038.5	1486	gaTACTTTATta/gata																																																																															
ESR1	2099	MSKCC	GRCh37	6	152201873	152201873	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779180038		P-0038682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	21	354	0	ENST00000206249.3:c.727C>T	p.Arg243Cys	p.R243C	ENST00000206249	NM_000125.3	243	Cgt/Tgt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910854	114910854	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	48	483	0	ENST00000543371.1:c.973C>T	p.Gln325Ter	p.Q325*	ENST00000543371	NM_001198531.1	325	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119406	70119725	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCACCCCAAAAGCACACACAGGGCTCTTACACAAGTAGCAATTAGGTCTTCCGGACCCTCCGGGCCCCAGACCCTCCCCTGATAAAAGGGGGCTGTCCAGTGTGTACCGGCGGGTTAATCATTGGGCGACTTATCTCCGGTGCAGCGCGCCTCTTGCGCGGGTGCGGGCCCTTATTACACTTTAGCAGCGAGGGAGGGTCCCCGGAGGGTGCCTAAGACTAGGGCGTCTGCACAGCCCTTGTTGATTTTCTCGTGCTTGTTCTTTTATTGTCCACAGGGCAATCCCAGGGCCCACCGACCCCACCCACCACCCCCAAAA	CCCACCCCAAAAGCACACACAGGGCTCTTACACAAGTAGCAATTAGGTCTTCCGGACCCTCCGGGCCCCAGACCCTCCCCTGATAAAAGGGGGCTGTCCAGTGTGTACCGGCGGGTTAATCATTGGGCGACTTATCTCCGGTGCAGCGCGCCTCTTGCGCGGGTGCGGGCCCTTATTACACTTTAGCAGCGAGGGAGGGTCCCCGGAGGGTGCCTAAGACTAGGGCGTCTGCACAGCCCTTGTTGATTTTCTCGTGCTTGTTCTTTTATTGTCCACAGGGCAATCCCAGGGCCCACCGACCCCACCCACCACCCCCAAAA	-			P-0038682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			5	133	44	0	ENST00000245479.2:c.686-276_729del		p.X229_splice	ENST00000245479	NM_000346.3	229																																																																																
TGFBR2	7048	MSKCC	GRCh37	3	30715656	30715656	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	21	272	0	ENST00000359013.4:c.1389T>A	p.Asn463Lys	p.N463K	ENST00000359013	NM_001024847.2	463	aaT/aaA																																																																															
APC	324	MSKCC	GRCh37	5	112174263	112174263	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	20	298	0	ENST00000257430.4:c.2974del	p.Ser992ValfsTer13	p.S992Vfs*13	ENST00000257430	NM_000038.5	991	gAa/ga																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199963	138199963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	54	479	0	ENST00000237289.4:c.1381C>T	p.Pro461Ser	p.P461S	ENST00000237289	NM_001270507.1	461	Cca/Tca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0038507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1160	100	772	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0038507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	70	544	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	175	810	0	ENST00000269305.4:c.596del	p.Gly199GlufsTer48	p.G199Efs*48	ENST00000269305	NM_001126112.2	199	gGa/ga																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117695884	117695884	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1143	67	870	0	ENST00000369458.3:c.553G>T	p.Val185Phe	p.V185F	ENST00000369458	NM_024626.3	185	Gtt/Ttt																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40353827	40353827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1197	104	805	0	ENST00000293328.3:c.2293G>A	p.Val765Ile	p.V765I	ENST00000293328	NM_012448.3	765	Gta/Ata																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213005	39213005	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1344	116	905	0	ENST00000402219.2:c.3962G>C	p.Arg1321Thr	p.R1321T	ENST00000402219	NM_005633.3	1321	aGa/aCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	51	565	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057947	27057948	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	378	688	0	ENST00000324856.7:c.1656dupA	p.Gln553ThrfsTer70	p.Q553Tfs*70	ENST00000324856	NM_006015.4	552	tca/tcAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573537	48573537	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	22	391	0	ENST00000342988.3:c.121G>T	p.Glu41Ter	p.E41*	ENST00000342988	NM_005359.5	41	Gaa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27022983	27022984	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	40	28	0	ENST00000324856.7:c.90dup	p.Gln31AlafsTer80	p.Q31Afs*80	ENST00000324856	NM_006015.4	30	cag/caGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446409	49446409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	224	820	0	ENST00000301067.7:c.1196G>A	p.Gly399Glu	p.G399E	ENST00000301067	NM_003482.3	399	gGg/gAg																																																																															
HGF	3082	MSKCC	GRCh37	7	81381528	81381528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	31	438	0	ENST00000222390.5:c.533G>A	p.Arg178Gln	p.R178Q	ENST00000222390	NM_000601.4	178	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	651	1003	0	ENST00000269305.4:c.401T>C	p.Phe134Ser	p.F134S	ENST00000269305	NM_001126112.2	134	tTt/tCt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115268890	115268890	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	278	741	0	ENST00000438362.2:c.1720G>T	p.Asp574Tyr	p.D574Y	ENST00000438362	NM_001242891.1	574	Gat/Tat																																																																															
IL10	3586	MSKCC	GRCh37	1	206945719	206945719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	485	724	1	ENST00000423557.1:c.62G>T	p.Gly21Val	p.G21V	ENST00000423557	NM_000572.2	21	gGc/gTc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125514016	125514016	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	306	604	0	ENST00000428830.2:c.954G>C	p.Gln318His	p.Q318H	ENST00000428830	NM_001114121.2	318	caG/caC																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856344	111856344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	33	118	0	ENST00000341259.2:c.395C>T	p.Pro132Leu	p.P132L	ENST00000341259	NM_005475.2	132	cCc/cTc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557441	21557441	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	220	723	0	ENST00000382592.4:c.2404G>C	p.Asp802His	p.D802H	ENST00000382592	NM_014572.2	802	Gat/Cat																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40679408	40679408	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0038513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	206	713	0	ENST00000249776.8:c.485+1G>T		p.X162_splice	ENST00000249776	NM_033286.3	162																																																																																
FANCA	2175	MSKCC	GRCh37	16	89857860	89857860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	322	884	1	ENST00000389301.3:c.1310C>T	p.Ala437Val	p.A437V	ENST00000389301	NM_000135.2	437	gCa/gTa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220152	5220152	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	210	809	0	ENST00000357368.4:c.3563T>C	p.Ile1188Thr	p.I1188T	ENST00000357368	NM_002850.3	1188	aTc/aCc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484583	57484583	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	537	724	0	ENST00000371085.3:c.667G>C	p.Asp223His	p.D223H	ENST00000371085	NM_000516.4	223	Gac/Cac																																																																															
ATRX	546	MSKCC	GRCh37	X	76912072	76912072	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	232	559	0	ENST00000373344.5:c.4192G>C	p.Asp1398His	p.D1398H	ENST00000373344	NM_000489.3	1398	Gat/Cat																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	356	445	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
CBFB	865	MSKCC	GRCh37	16	67063672	67063672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	133	258	0	ENST00000412916.2:c.121C>T	p.Gln41Ter	p.Q41*	ENST00000412916		41	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115711	8115711	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	210	283	1	ENST00000346208.3:c.1060delC	p.Leu354Ter	p.L354*	ENST00000346208		353	Ccc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0004883-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			432	404	461	2	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577587	7577587	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004883-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	203	698	2	ENST00000269305.4:c.694A>T	p.Ile232Phe	p.I232F	ENST00000269305	NM_001126112.2	232	Atc/Ttc																																																																															
APC	324	MSKCC	GRCh37	5	112175772	112175772	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004883-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			228	96	356	0	ENST00000257430.4:c.4483del	p.Ser1495ValfsTer12	p.S1495Vfs*12	ENST00000257430	NM_000038.5	1494	gAa/ga																																																																															
MGA	23269	MSKCC	GRCh37	15	42005445	42005445	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004883-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			758	236	748	0	ENST00000219905.7:c.3181C>G	p.Leu1061Val	p.L1061V	ENST00000219905	NM_001164273.1	1061	Cta/Gta																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27777868	27777868	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004883-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			363	131	428	0	ENST00000369163.2:c.17A>C	p.Gln6Pro	p.Q6P	ENST00000369163	NM_003536.2	6	cAg/cCg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346319	89346319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018948-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	117	560	0	ENST00000301030.4:c.6631C>T	p.Pro2211Ser	p.P2211S	ENST00000301030	NM_001256183.1	2211	Cca/Tca																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46733199	46733220	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGCTCATCTCCGGAACTCCC	GGTGCTCATCTCCGGAACTCCC	-			P-0018948-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			684	87	666	0	ENST00000371975.4:c.960_981del	p.Val321SerfsTer20	p.V321Sfs*20	ENST00000371975	NM_003579.3	320	cgGGTGCTCATCTCCGGAACTCCC/cg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593529	48593529	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018948-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			303	49	315	0	ENST00000342988.3:c.1280A>G	p.His427Arg	p.H427R	ENST00000342988	NM_005359.5	427	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936092	+	missense_variant	Missense_Mutation	DNP	GA	GA	AG			P-0018948-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			541	241	704	4	ENST00000263967.3:c.1633_1634delinsAG	p.Glu545Arg	p.E545R	ENST00000263967	NM_006218.2	545	GAg/AGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020057-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			296	59	824	0	ENST00000269305.4:c.764T>G	p.Ile255Ser	p.I255S	ENST00000269305	NM_001126112.2	255	aTc/aGc																																																																															
CDH1	999	MSKCC	GRCh37	16	68847312	68847313	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020057-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			224	12	704	0	ENST00000261769.5:c.1235dup	p.Tyr413IlefsTer6	p.Y413Ifs*6	ENST00000261769	NM_004360.3	412	gta/gTta																																																																															
CDH1	999	MSKCC	GRCh37	16	68844115	68844116	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTT			P-0020057-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			176	45	620	0	ENST00000261769.5:c.706_707insTTGT	p.Ser236PhefsTer9	p.S236Ffs*9	ENST00000261769	NM_004360.3	235	gtg/gTGTTtg																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0036804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	129	264	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579419	7579420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	241	602	0	ENST00000269305.4:c.267dup	p.Ser90LeufsTer59	p.S90Lfs*59	ENST00000269305	NM_001126112.2	89	-/C																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0038412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	410	896	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913558	32913559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1265028174		P-0038412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	182	577	2	ENST00000380152.3:c.5073dup	p.Trp1692MetfsTer3	p.W1692Mfs*3	ENST00000380152		1689	gca/gcAa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858503	57858523	+	inframe_deletion	In_Frame_Del	DEL	CGGGCACTGTCCATCTCACCT	CGGGCACTGTCCATCTCACCT	-			P-0038412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	51	897	0	ENST00000228682.2:c.242_262del	p.Arg81_Pro87del	p.R81_P87del	ENST00000228682	NM_005269.2	81	CGGGCACTGTCCATCTCACCT/-																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643216	38643216	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0038412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	137	385	0	ENST00000299084.4:c.686T>C	p.Val229Ala	p.V229A	ENST00000299084	NM_152594.2	229	gTc/gCc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141456	11141456	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	362	979	0	ENST00000344626.4:c.3433C>A	p.Pro1145Thr	p.P1145T	ENST00000344626	NM_003072.3	1145	Ccc/Acc																																																																															
HGF	3082	MSKCC	GRCh37	7	81381555	81381555	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	44	365	0	ENST00000222390.5:c.506G>T	p.Gly169Val	p.G169V	ENST00000222390	NM_000601.4	169	gGt/gTt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155196	55155196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	66	721	1	ENST00000257290.5:c.2795G>A	p.Cys932Tyr	p.C932Y	ENST00000257290	NM_006206.4	932	tGc/tAc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78704450	78704450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	65	679	0	ENST00000306801.3:c.598G>A	p.Gly200Ser	p.G200S	ENST00000306801	NM_020761.2	200	Ggc/Agc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978404	2978404	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	66	1022	0	ENST00000396946.4:c.926G>C	p.Arg309Pro	p.R309P	ENST00000396946	NM_032415.4	309	cGc/cCc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319853	8319853	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	67	471	0	ENST00000356435.5:c.5648G>C	p.Arg1883Pro	p.R1883P	ENST00000356435		1883	cGa/cCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	100	933	0	ENST00000269305.4:c.645T>G	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agG																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798483	32798483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200271380		P-0038418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	52	955	2	ENST00000374899.4:c.1373C>T	p.Thr458Met	p.T458M	ENST00000374899	NM_018833.2	458	aCg/aTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0038420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	135	383	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984663	11984678	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTTTAACAGAGAGAG	ATTTTAACAGAGAGAG	-			P-0038420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	63	396	0	ENST00000353533.5:c.219-9_225del		p.X73_splice	ENST00000353533	NM_003010.3	73																																																																																
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0038422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	563	777	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258744	115258744	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121434596		P-0038423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	203	555	0	ENST00000369535.4:c.38G>T	p.Gly13Val	p.G13V	ENST00000369535	NM_002524.4	13	gGt/gTt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	178	555	0	ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720735	89720736	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	38	226	0	ENST00000371953.3:c.887dup	p.Cys296TrpfsTer2	p.C296Wfs*2	ENST00000371953	NM_000314.4	296	tgt/tGgt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741897	17741897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	76	155	0	ENST00000250003.3:c.568G>A	p.Gly190Ser	p.G190S	ENST00000250003	NM_002478.4	190	Ggc/Agc																																																																															
ATM	472	MSKCC	GRCh37	11	108117833	108117833	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	87	448	0	ENST00000278616.4:c.1044G>C	p.Leu348Phe	p.L348F	ENST00000278616	NM_000051.3	348	ttG/ttC																																																																															
CDK8	1024	MSKCC	GRCh37	13	26967567	26967567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	119	550	0	ENST00000381527.3:c.710G>A	p.Arg237Gln	p.R237Q	ENST00000381527	NM_001260.1	237	cGa/cAa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068433	26068433	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0038423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	105	421	0	ENST00000435504.4:c.58-1G>C		p.X20_splice	ENST00000435504		20																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67591145	67591145	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	88	461	0	ENST00000274335.5:c.1738T>G	p.Tyr580Asp	p.Y580D	ENST00000274335		580	Tac/Gac																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0038423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	130	539	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175780	112175780	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	111	390	0	ENST00000257430.4:c.4490del	p.Pro1497GlnfsTer10	p.P1497Qfs*10	ENST00000257430	NM_000038.5	1497	Cca/ca																																																																															
ATRX	546	MSKCC	GRCh37	X	76764088	76764088	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	110	643	0	ENST00000373344.5:c.7220G>C	p.Arg2407Pro	p.R2407P	ENST00000373344	NM_000489.3	2407	cGa/cCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	30	350	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0038465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	43	643	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036694-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			695	332	538	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482592	56482592	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036694-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			792	419	655	1	ENST00000267101.3:c.1049G>T	p.Gly350Val	p.G350V	ENST00000267101	NM_001982.3	350	gGa/gTa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112458	115112478	+	inframe_deletion	In_Frame_Del	DEL	GCCGCCCGCTGTCCCGGGGCC	GCCGCCCGCTGTCCCGGGGCC	-			P-0036694-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	354	575	0	ENST00000257566.3:c.1262_1282del	p.Arg421_Arg427del	p.R421_R427del	ENST00000257566	NM_016569.3	421	cGGCCCCGGGACAGCGGGCGGCtg/ctg																																																																															
IDH2	3418	MSKCC	GRCh37	15	90645622	90645622	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0036694-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			305	87	129	0	ENST00000330062.3:c.1A>T	p.Met1?	p.M1?	ENST00000330062	NM_002168.2	1	Atg/Ttg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138403629	138403629	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036694-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			538	271	402	0	ENST00000289153.2:c.2153A>G	p.Lys718Arg	p.K718R	ENST00000289153	NM_006219.2	718	aAg/aGg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131915615	131915615	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036694-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	177	281	0	ENST00000265335.6:c.613G>T	p.Glu205Ter	p.E205*	ENST00000265335		205	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578464	7578464	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	241	937	0	ENST00000269305.4:c.466delC	p.Arg156AlafsTer14	p.R156Afs*14	ENST00000269305	NM_001126112.2	156	Cgc/gc																																																																															
TERT	7015	MSKCC	GRCh37	5	1278779	1278779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	171	728	0	ENST00000310581.5:c.2263G>A	p.Val755Ile	p.V755I	ENST00000310581	NM_198253.2	755	Gtc/Atc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914234	32914234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	64	522	0	ENST00000380152.3:c.5742C>A	p.Ser1914Arg	p.S1914R	ENST00000380152		1914	agC/agA																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991508	72991508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755878058		P-0038166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	194	827	0	ENST00000268489.5:c.2537G>A	p.Arg846His	p.R846H	ENST00000268489	NM_006885.3	846	cGc/cAc																																																																															
PGR	5241	MSKCC	GRCh37	11	100999693	100999693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	271	1079	0	ENST00000325455.5:c.109C>A	p.Pro37Thr	p.P37T	ENST00000325455	NM_001202474.3	37	Ccg/Acg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760962	59760962	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	218	691	0	ENST00000259008.2:c.3445C>G	p.Leu1149Val	p.L1149V	ENST00000259008	NM_032043.2	1149	Cta/Gta																																																																															
KDR	3791	MSKCC	GRCh37	4	55980411	55980411	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	105	326	0	ENST00000263923.4:c.680T>G	p.Val227Gly	p.V227G	ENST00000263923	NM_002253.2	227	gTt/gGt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117683801	117683801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	146	458	0	ENST00000368508.3:c.3346G>A	p.Glu1116Lys	p.E1116K	ENST00000368508	NM_002944.2	1116	Gaa/Aaa																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983305	149983305	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	191	591	0	ENST00000253339.5:c.2953A>T	p.Ile985Phe	p.I985F	ENST00000253339		985	Att/Ttt																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30309769	30309769	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	34	580	0	ENST00000307677.4:c.253G>T	p.Ala85Ser	p.A85S	ENST00000307677	NM_138578.1	85	Gca/Tca																																																																															
ATRX	546	MSKCC	GRCh37	X	76939244	76939244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	37	418	0	ENST00000373344.5:c.1504C>T	p.Pro502Ser	p.P502S	ENST00000373344	NM_000489.3	502	Cct/Tct																																																																															
TP63	8626	MSKCC	GRCh37	3	189586470	189586470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	72	419	0	ENST00000264731.3:c.1094C>T	p.Ser365Leu	p.S365L	ENST00000264731	NM_003722.4	365	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	901	429	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0038172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	271	752	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038874	12038874	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	150	327	0	ENST00000396373.4:c.1167G>T	p.Met389Ile	p.M389I	ENST00000396373	NM_001987.4	389	atG/atT																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986531	36986532	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	254	668	0	ENST00000354822.5:c.1157dup	p.Asp386GlufsTer53	p.D386Efs*53	ENST00000354822	NM_001079668.2	386	gac/gaAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0038369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	265	755	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682384	37682384	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	327	645	0	ENST00000447079.4:c.3575del	p.Ala1192GlufsTer23	p.A1192Efs*23	ENST00000447079	NM_015083.1	1192	gCa/ga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216504	36216504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	201	791	0	ENST00000222270.7:c.3767G>A	p.Gly1256Glu	p.G1256E	ENST00000222270	NM_014727.1	1256	gGa/gAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	162	459	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0038371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	234	481	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876660825		P-0038371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	249	674	0	ENST00000269305.4:c.569C>G	p.Pro190Arg	p.P190R	ENST00000269305	NM_001126112.2	190	cCt/cGt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257170	16257170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	63	551	0	ENST00000375759.3:c.4435G>A	p.Asp1479Asn	p.D1479N	ENST00000375759	NM_015001.2	1479	Gat/Aat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584543	48584544	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0038371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	259	506	0	ENST00000342988.3:c.717_718del	p.Gln239HisfsTer24	p.Q239Hfs*24	ENST00000342988	NM_005359.5	239	cAG/c																																																																															
AGO2	27161	MSKCC	GRCh37	8	141566300	141566300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	175	483	0	ENST00000220592.5:c.1112C>T	p.Ser371Leu	p.S371L	ENST00000220592	NM_012154.3	371	tCg/tTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971192	21971193	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GCCCATCATC			P-0038371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	189	499	0	ENST00000361570.3:c.322_331dup	p.Gln111ArgfsTer2	p.Q111Rfs*2	ENST00000361570	NM_058195.3	111	cag/cGATGATGGGCag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0038375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	139	375	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	177	663	0	ENST00000269305.4:c.643A>C	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	Agt/Cgt																																																																															
RB1	5925	MSKCC	GRCh37	13	48923144	48923144	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	51	287	0	ENST00000267163.4:c.596delT	p.Leu199TyrfsTer2	p.L199Yfs*2	ENST00000267163	NM_000321.2	198	Ttt/tt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243800998	243800998	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	33	533	0	ENST00000263826.5:c.476T>A	p.Phe159Tyr	p.F159Y	ENST00000263826	NM_005465.4	159	tTt/tAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	82	385	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391024	89391024	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	111	551	0	ENST00000336596.2:c.1095delA	p.Lys365AsnfsTer6	p.K365Nfs*6	ENST00000336596	NM_005233.5	364	Aaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	134	616	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	68	344	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16042434	16042434	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	91	458	0	ENST00000268712.3:c.1240C>T	p.Arg414Ter	p.R414*	ENST00000268712	NM_006311.3	414	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	90	444	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	87	495	1	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	54	268	0	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	277	662	2	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
ATRX	546	MSKCC	GRCh37	X	76890149	76890150	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	88	427	0	ENST00000373344.5:c.4744dup	p.Thr1582AsnfsTer19	p.T1582Nfs*19	ENST00000373344	NM_000489.3	1582	aca/aAca																																																																															
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	77	418	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																															
B2M	567	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	32	268	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11097624	11097625	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1165714406		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	134	726	0	ENST00000344626.4:c.810dup	p.Gly271ArgfsTer16	p.G271Rfs*16	ENST00000344626	NM_003072.3	268	-/C																																																																															
INSR	3643	MSKCC	GRCh37	19	7125379	7125379	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778982272		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	125	668	1	ENST00000302850.5:c.3173C>T	p.Thr1058Met	p.T1058M	ENST00000302850	NM_000208.2	1058	aCg/aTg																																																																															
ERG	2078	MSKCC	GRCh37	21	39772564	39772564	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	71	360	0	ENST00000288319.7:c.677delG	p.Gly226ValfsTer65	p.G226Vfs*65	ENST00000288319	NM_182918.3	226	gGt/gt																																																																															
RHOA	387	MSKCC	GRCh37	3	49412898	49412898	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	110	671	0	ENST00000418115.1:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000418115	NM_001664.2	42	tAt/tGt																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	58	453	1	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346391	73346391	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	49	279	0	ENST00000377767.4:c.1409T>C	p.Leu470Pro	p.L470P	ENST00000377767	NM_014953.3	470	cTg/cCg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18524120	18524120	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	49	338	0	ENST00000266497.5:c.1635del	p.Glu548LysfsTer2	p.E548Kfs*2	ENST00000266497		544	aaT/aa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	12	93	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175957465	175957465	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	85	415	0	ENST00000367669.3:c.1931del	p.Asn644ThrfsTer3	p.N644Tfs*3	ENST00000367669	NM_022457.5	644	aAc/ac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913558	32913559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1265028174		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	70	455	0	ENST00000380152.3:c.5073dup	p.Trp1692MetfsTer3	p.W1692Mfs*3	ENST00000380152		1689	gca/gcAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332699	153332699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	89	402	0	ENST00000281708.4:c.257C>T	p.Ser86Leu	p.S86L	ENST00000281708	NM_033632.3	86	tCg/tTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	105	681	5	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	114	536	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	96	638	0	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143181675	143181675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	104	418	0	ENST00000262992.4:c.658G>A	p.Gly220Arg	p.G220R	ENST00000262992	NM_001101669.1	220	Gga/Aga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153271193	153271193	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	37	222	0	ENST00000281708.4:c.584+1G>A		p.X195_splice	ENST00000281708	NM_033632.3	195																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	217	618	1	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39709868	39709870	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	48	277	0	ENST00000361337.2:c.504_506del	p.Glu169del	p.E169del	ENST00000361337	NM_003286.2	165	ctAGAa/cta																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31405819	31405819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	64	240	1	ENST00000344624.3:c.3959C>T	p.Ala1320Val	p.A1320V	ENST00000344624		1320	gCg/gTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81973526	81973526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	89	487	0	ENST00000359376.3:c.3343C>T	p.Pro1115Ser	p.P1115S	ENST00000359376	NM_002661.3	1115	Cca/Tca																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25536847	25536847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	91	562	0	ENST00000264709.3:c.7G>A	p.Ala3Thr	p.A3T	ENST00000264709	NM_175629.2	3	Gcc/Acc																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345760	152345760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	65	241	1	ENST00000359321.1:c.810del	p.Phe270LeufsTer27	p.F270Lfs*27	ENST00000359321	NM_005431.1	270	ttT/tt																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792437	33792437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	115	537	1	ENST00000498907.2:c.884C>T	p.Ala295Val	p.A295V	ENST00000498907	NM_004364.3	295	gCg/gTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420327	88420327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	60	405	1	ENST00000360948.2:c.2359C>T	p.Arg787Cys	p.R787C	ENST00000360948	NM_001012338.2	787	Cgt/Tgt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1620979	1620979	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1329397192		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	91	675	5	ENST00000344749.5:c.1081del	p.Gln361ArgfsTer33	p.Q361Rfs*33	ENST00000344749	NM_001136139.2	361	Cag/ag																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94197307	94197308	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	67	426	0	ENST00000323929.3:c.1196dup	p.Arg400GlnfsTer3	p.R400Qfs*3	ENST00000323929	NM_005591.3	399	ttc/ttTc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163315547	163315547	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	65	432	0	ENST00000271452.3:c.887A>G	p.Tyr296Cys	p.Y296C	ENST00000271452	NM_145697.2	296	tAt/tGt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243675627	243675627	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	62	211	0	ENST00000263826.5:c.1353del	p.Lys451AsnfsTer55	p.K451Nfs*55	ENST00000263826	NM_005465.4	451	aaA/aa																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205580	61205580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	86	396	0	ENST00000301761.2:c.365C>T	p.Ala122Val	p.A122V	ENST00000301761	NM_017841.2	122	gCc/gTc																																																																															
ATM	472	MSKCC	GRCh37	11	108224603	108224603	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	59	331	0	ENST00000278616.4:c.8782A>G	p.Arg2928Gly	p.R2928G	ENST00000278616	NM_000051.3	2928	Aga/Gga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2113013	2113013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	139	624	2	ENST00000219476.3:c.1402G>A	p.Val468Met	p.V468M	ENST00000219476	NM_000548.3	468	Gtg/Atg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858561	9858561	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	114	493	0	ENST00000330684.3:c.2840G>T	p.Arg947Met	p.R947M	ENST00000330684	NM_001134407.1	947	aGg/aTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348494	89348494	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs189656772		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	130	661	0	ENST00000301030.4:c.4456C>T	p.Arg1486Trp	p.R1486W	ENST00000301030	NM_001256183.1	1486	Cgg/Tgg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117882	70117882	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	102	501	1	ENST00000245479.2:c.350A>G	p.Gln117Arg	p.Q117R	ENST00000245479	NM_000346.3	117	cAg/cGg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216587	2216587	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	153	643	0	ENST00000398665.3:c.2231A>G	p.Asp744Gly	p.D744G	ENST00000398665	NM_032482.2	744	gAc/gGc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244269	5244269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	118	619	0	ENST00000357368.4:c.1213G>A	p.Val405Ile	p.V405I	ENST00000357368	NM_002850.3	405	Gtc/Atc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600036	10600036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	137	579	0	ENST00000171111.5:c.1540G>A	p.Val514Ile	p.V514I	ENST00000171111	NM_203500.1	514	Gtc/Atc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123724	11123724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	122	568	0	ENST00000344626.4:c.2374C>T	p.Leu792Phe	p.L792F	ENST00000344626	NM_003072.3	792	Ctc/Ttc																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627645	14627645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	125	538	0	ENST00000254322.2:c.425C>T	p.Thr142Ile	p.T142I	ENST00000254322	NM_006145.1	142	aCc/aTc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026891	48026891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	88	407	1	ENST00000234420.5:c.1769C>A	p.Pro590His	p.P590H	ENST00000234420	NM_000179.2	590	cCc/cAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41545790	41545790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	134	558	0	ENST00000263253.7:c.2405C>T	p.Pro802Leu	p.P802L	ENST00000263253	NM_001429.3	802	cCg/cTg																																																																															
SDHA	6389	MSKCC	GRCh37	5	231052	231052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	74	346	0	ENST00000264932.6:c.832G>T	p.Ala278Ser	p.A278S	ENST00000264932	NM_004168.2	278	Gcc/Tcc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181757	56181758	+	splice_acceptor_variant	Splice_Site	INS	-	-	G			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	45	272	0	ENST00000399503.3:c.3986dup		p.X1329_splice	ENST00000399503	NM_005921.1	1329																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67588186	67588186	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	53	285	1	ENST00000274335.5:c.1016C>A	p.Ser339Ter	p.S339*	ENST00000274335		339	tCg/tAg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048241	180048241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	128	591	0	ENST00000261937.6:c.2032C>T	p.Pro678Ser	p.P678S	ENST00000261937	NM_182925.4	678	Cct/Tct																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730017	41730017	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	86	561	0	ENST00000242208.4:c.512T>C	p.Val171Ala	p.V171A	ENST00000242208	NM_002192.2	171	gTc/gCc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741961	145741961	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	102	609	0	ENST00000428558.2:c.542A>G	p.Gln181Arg	p.Q181R	ENST00000428558	NM_004260.3	181	cAg/cGg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63409841	63409841	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	62	481	0	ENST00000330258.3:c.3326T>C	p.Leu1109Pro	p.L1109P	ENST00000330258	NM_152424.3	1109	cTg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0038383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	105	587	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	60	439	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0038383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	50	401	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521481	8521481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	113	544	0	ENST00000356435.5:c.757G>A	p.Val253Ile	p.V253I	ENST00000356435		253	Gtt/Att																																																																															
APC	324	MSKCC	GRCh37	5	112175879	112175880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	40	269	0	ENST00000257430.4:c.4592dup	p.Asn1531LysfsTer2	p.N1531Kfs*2	ENST00000257430	NM_000038.5	1530	gaa/gAaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	94	399	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579312	7579313	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GT			P-0038594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	91	644	0	ENST00000269305.4:c.373_374dup	p.Tyr126ArgfsTer45	p.Y126Rfs*45	ENST00000269305	NM_001126112.2	125	acg/acACg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332838	153332841	+	frameshift_variant	Frame_Shift_Del	DEL	CCTC	CCTC	-			P-0038594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	73	405	0	ENST00000281708.4:c.115_118del	p.Glu39AsnfsTer23	p.E39Nfs*23	ENST00000281708	NM_033632.3	39	GAGGaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0038616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	76	239	1	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553668	106553668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	69	427	1	ENST00000369096.4:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000369096	NM_001198.3	545	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577520	7577520	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	119	638	0	ENST00000269305.4:c.761T>C	p.Ile254Thr	p.I254T	ENST00000269305	NM_001126112.2	254	aTc/aCc																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127912046	127912046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	60	367	0	ENST00000373547.4:c.824A>G	p.Lys275Arg	p.K275R	ENST00000373547	NM_002721.4	275	aAa/aGa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	51	357	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920325	134920325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	26	311	0	ENST00000398015.3:c.2140G>A	p.Gly714Arg	p.G714R	ENST00000398015	NM_004441.4	714	Ggg/Agg																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612879	228612879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	37	597	0	ENST00000366696.1:c.148C>T	p.Arg50Cys	p.R50C	ENST00000366696	NM_003493.2	50	Cgc/Tgc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961295	15961295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	59	454	0	ENST00000268712.3:c.6094C>T	p.Pro2032Ser	p.P2032S	ENST00000268712	NM_006311.3	2032	Cct/Tct																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440698	56440698	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	58	538	1	ENST00000407977.2:c.520del	p.Glu174SerfsTer11	p.E174Sfs*11	ENST00000407977		174	Gag/ag																																																																															
ERF	2077	MSKCC	GRCh37	19	42753539	42753539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	56	650	0	ENST00000222329.4:c.725C>A	p.Pro242His	p.P242H	ENST00000222329	NM_006494.2	242	cCt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250928	153250928	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	24	204	0	ENST00000281708.4:c.1132G>T	p.Gly378Ter	p.G378*	ENST00000281708	NM_033632.3	378	Gga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743924	40743924	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199514226		P-0038691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	169	426	1	ENST00000373198.4:c.3071C>T	p.Thr1024Met	p.T1024M	ENST00000373198	NM_133170.3	1024	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112151245	112151246	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0038691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	111	375	0	ENST00000257430.4:c.893_894del	p.His298LeufsTer28	p.H298Lfs*28	ENST00000257430	NM_000038.5	296	agCAca/agca																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925328	114925328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	135	463	0	ENST00000543371.1:c.1406G>A	p.Cys469Tyr	p.C469Y	ENST00000543371	NM_001198531.1	469	tGc/tAc																																																																															
ATM	472	MSKCC	GRCh37	11	108202221	108202221	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	104	397	0	ENST00000278616.4:c.7566A>T	p.Gln2522His	p.Q2522H	ENST00000278616	NM_000051.3	2522	caA/caT																																																																															
ATM	472	MSKCC	GRCh37	11	108121634	108121634	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0038691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	151	408	0	ENST00000278616.4:c.1442T>G	p.Leu481Ter	p.L481*	ENST00000278616	NM_000051.3	481	tTa/tGa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913791	32913791	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0038691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	146	373	0	ENST00000380152.3:c.5299A>T	p.Lys1767Ter	p.K1767*	ENST00000380152		1767	Aaa/Taa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11114074	11114075	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0038691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	177	422	0	ENST00000344626.4:c.2001+2dup		p.X667_splice	ENST00000344626	NM_003072.3	667																																																																																
APC	324	MSKCC	GRCh37	5	112174370	112174371	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0038691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	70	223	0	ENST00000257430.4:c.3081_3082del	p.Tyr1027Ter	p.Y1027*	ENST00000257430	NM_000038.5	1027	TAt/t																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243472	46243472	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	111	378	0	ENST00000334344.6:c.1825C>T	p.Gln609Ter	p.Q609*	ENST00000334344	NM_152641.2	609	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653815	89653815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	30	367	0	ENST00000371953.3:c.113C>T	p.Pro38Leu	p.P38L	ENST00000371953	NM_000314.4	38	cCt/cTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100208	27100208	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0038692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	100	433	0	ENST00000324856.7:c.4004+1del		p.R1335fs	ENST00000324856	NM_006015.4	1335	cGa/ca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100383	27100395	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACAGCAGGTGAGG	ACAGCAGGTGAGG	-			P-0038692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	61	486	0	ENST00000324856.7:c.4096_4101+7del		p.X1366_splice	ENST00000324856	NM_006015.4	1366																																																																																
GATA3	2625	MSKCC	GRCh37	10	8111496	8111497	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGAG			P-0038692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	153	638	0	ENST00000346208.3:c.984_987dupGAGG	p.Arg330GlufsTer23	p.R330Efs*23	ENST00000346208		328	tgg/tGGAGgg																																																																															
ATR	545	MSKCC	GRCh37	3	142185210	142185210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	102	522	0	ENST00000350721.4:c.6853C>T	p.Pro2285Ser	p.P2285S	ENST00000350721	NM_001184.3	2285	Cca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0011283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	160	767	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114917779	114917779	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0011283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	167	482	0	ENST00000543371.1:c.1270-1G>A		p.X424_splice	ENST00000543371	NM_001198531.1	424																																																																																
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0011283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	138	283	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212537975	212537975	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267599192		P-0011283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	156	423	1	ENST00000342788.4:c.1630C>T	p.Arg544Trp	p.R544W	ENST00000342788	NM_005235.2	544	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0037987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	194	717	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0037987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	170	614	1	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868325	56868325	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	58	407	0	ENST00000308159.5:c.1708G>T	p.Val570Leu	p.V570L	ENST00000308159	NM_014669.4	570	Gtg/Ttg																																																																															
APC	324	MSKCC	GRCh37	5	112175617	112175617	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	113	409	0	ENST00000257430.4:c.4326del	p.Pro1443LeufsTer30	p.P1443Lfs*30	ENST00000257430	NM_000038.5	1442	ccT/cc																																																																															
APC	324	MSKCC	GRCh37	5	112175658	112175658	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	109	399	0	ENST00000257430.4:c.4367A>T	p.Lys1456Ile	p.K1456I	ENST00000257430	NM_000038.5	1456	aAa/aTa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	243	545	0	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2954933	2954933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	310	610	0	ENST00000396946.4:c.2777C>T	p.Pro926Leu	p.P926L	ENST00000396946	NM_032415.4	926	cCg/cTg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135787720	135787720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	417	572	0	ENST00000298552.3:c.862C>T	p.Arg288Cys	p.R288C	ENST00000298552	NM_001162426.1	288	Cgt/Tgt																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72893564	72893564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	187	466	2	ENST00000325599.8:c.154C>T	p.Pro52Ser	p.P52S	ENST00000325599	NM_018130.2	52	Cct/Tct																																																																															
APC	324	MSKCC	GRCh37	5	112175450	112175451	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0038388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	213	390	0	ENST00000257430.4:c.4159_4160insA	p.Cys1387Ter	p.C1387*	ENST00000257430	NM_000038.5	1387	tgt/tAgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	133	485	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81916879	81916879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	173	806	0	ENST00000359376.3:c.698C>T	p.Thr233Ile	p.T233I	ENST00000359376	NM_002661.3	233	aCt/aTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29556484	29556484	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	90	333	0	ENST00000358273.4:c.2850+1G>T		p.X950_splice	ENST00000358273	NM_001042492.2	950																																																																																
HLA-A	3105	MSKCC	GRCh37	6	29912175	29912175	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	44	328	0	ENST00000376809.5:c.895+1G>T		p.X299_splice	ENST00000376809	NM_002116.7	299																																																																																
IKBKE	9641	MSKCC	GRCh37	1	206658560	206658560	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	142	567	0	ENST00000367120.3:c.1533A>T	p.Gln511His	p.Q511H	ENST00000367120	NM_014002.3	511	caA/caT																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228613002	228613002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147766330		P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	221	506	0	ENST00000366696.1:c.25C>T	p.Arg9Cys	p.R9C	ENST00000366696	NM_003493.2	9	Cgc/Tgc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633616	69633616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	29	54	2	ENST00000334134.2:c.86C>T	p.Ala29Val	p.A29V	ENST00000334134	NM_005247.2	29	gCg/gTg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856655	111856655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	88	359	0	ENST00000341259.2:c.706G>T	p.Val236Leu	p.V236L	ENST00000341259	NM_005475.2	236	Gtg/Ttg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916193	9916193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	162	647	0	ENST00000330684.3:c.2096C>A	p.Pro699His	p.P699H	ENST00000330684	NM_001134407.1	699	cCc/cAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29657356	29657356	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	174	653	0	ENST00000358273.4:c.5652T>A	p.Phe1884Leu	p.F1884L	ENST00000358273	NM_001042492.2	1884	ttT/ttA																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485873	57485873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	124	422	0	ENST00000371085.3:c.1174G>A	p.Glu392Lys	p.E392K	ENST00000371085	NM_000516.4	392	Gag/Aag																																																																															
ERG	2078	MSKCC	GRCh37	21	39772567	39772567	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	85	457	0	ENST00000288319.7:c.674G>T	p.Gly225Val	p.G225V	ENST00000288319	NM_182918.3	225	gGg/gTg																																																																															
ATR	545	MSKCC	GRCh37	3	142238524	142238524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	68	338	0	ENST00000350721.4:c.4369C>A	p.His1457Asn	p.H1457N	ENST00000350721	NM_001184.3	1457	Cat/Aat																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374707	149374708	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	159	662	0	ENST00000360632.3:c.386dup	p.Trp130LeufsTer27	p.W130Lfs*27	ENST00000360632	NM_015472.4	129	ggc/ggGc																																																																															
TP63	8626	MSKCC	GRCh37	3	189584471	189584471	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	123	382	0	ENST00000264731.3:c.767G>T	p.Gly256Val	p.G256V	ENST00000264731	NM_003722.4	256	gGa/gTa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	142950058	142950058	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	104	407	0	ENST00000262992.4:c.2652C>A	p.Cys884Ter	p.C884*	ENST00000262992	NM_001101669.1	884	tgC/tgA																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729375	41729375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	179	707	0	ENST00000242208.4:c.1154C>T	p.Ala385Val	p.A385V	ENST00000242208	NM_002192.2	385	gCc/gTc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251243	99251243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	160	771	1	ENST00000268035.6:c.547C>T	p.Pro183Ser	p.P183S	ENST00000268035	NM_000875.3	183	Cca/Tca																																																																															
NPM1	4869	MSKCC	GRCh37	5	170827925	170827925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	57	681	1	ENST00000296930.5:c.665C>T	p.Ser222Leu	p.S222L	ENST00000296930	NM_002520.6	222	tCa/tTa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168997	32168997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	130	894	2	ENST00000375023.3:c.4036C>T	p.Arg1346Trp	p.R1346W	ENST00000375023	NM_004557.3	1346	Cgg/Tgg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932515	39932515	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	145	455	1	ENST00000378444.4:c.2084A>T	p.His695Leu	p.H695L	ENST00000378444	NM_001123385.1	695	cAc/cTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	100	165	0				ENST00000310581	NM_198253.2																																																																																	
CDK12	51755	MSKCC	GRCh37	17	37682342	37682342	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			6499	345	600	0	ENST00000447079.4:c.3533C>G	p.Ser1178Cys	p.S1178C	ENST00000447079	NM_015083.1	1178	tCt/tGt																																																																															
MED12	9968	MSKCC	GRCh37	X	70352324	70352324	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	277	677	0	ENST00000374080.3:c.4351T>A	p.Leu1451Met	p.L1451M	ENST00000374080		1451	Ttg/Atg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692911	89692911	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909241		P-0038328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	108	569	0	ENST00000371953.3:c.395G>A	p.Gly132Asp	p.G132D	ENST00000371953	NM_000314.4	132	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs28934873		P-0038328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	319	914	0	ENST00000269305.4:c.398T>C	p.Met133Thr	p.M133T	ENST00000269305	NM_001126112.2	133	aTg/aCg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2207621	2207621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	265	750	0	ENST00000398665.3:c.905C>T	p.Ser302Leu	p.S302L	ENST00000398665	NM_032482.2	302	tCg/tTg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267491	198267491	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	92	361	0	ENST00000335508.6:c.1866G>T	p.Glu622Asp	p.E622D	ENST00000335508	NM_012433.2	622	gaG/gaT																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30323896	30323896	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0038328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	72	271	0	ENST00000322652.5:c.1874G>C	p.Gly625Ala	p.G625A	ENST00000322652	NM_015355.2	625	gGg/gCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	363	329	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920413	114920413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	96	435	0	ENST00000543371.1:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000543371	NM_001198531.1	452	Ggg/Agg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856098	111856098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	76	266	0	ENST00000341259.2:c.149G>A	p.Arg50Gln	p.R50Q	ENST00000341259	NM_005475.2	50	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175248	112175249	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTGA			P-0038331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	96	206	0	ENST00000257430.4:c.3959_3962dup	p.Val1323ArgfsTer10	p.V1323Rfs*10	ENST00000257430	NM_000038.5	1319	-/GTGA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577574	+	protein_altering_variant	In_Frame_Del	DEL	CACATGT	CACATGT	A			P-0038331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	224	497	1	ENST00000269305.4:c.707_713delinsT	p.Tyr236_Cys238delinsPhe	p.Y236_C238delinsF	ENST00000269305	NM_001126112.2	236	tACATGTGt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0038335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	238	625	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0038335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	123	413	0	ENST00000256078.4:c.34_35delGGinsCT	p.Gly12Leu	p.G12L	ENST00000256078	NM_033360.2	12	GGt/CTt																																																																															
CIC	23152	MSKCC	GRCh37	19	42797278	42797278	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs968289754		P-0038277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	66	498	0	ENST00000575354.2:c.3640C>T	p.Arg1214Ter	p.R1214*	ENST00000575354	NM_015125.3	1214	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874012	151874013	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	39	248	0	ENST00000262189.6:c.8525dup	p.Asn2842LysfsTer2	p.N2842Kfs*2	ENST00000262189	NM_170606.2	2842	aat/aaAt																																																																															
TET1	80312	MSKCC	GRCh37	10	70451459	70451459	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	85	333	0	ENST00000373644.4:c.6299A>T	p.Glu2100Val	p.E2100V	ENST00000373644	NM_030625.2	2100	gAa/gTa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871112	12871112	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	35	180	0	ENST00000228872.4:c.341del	p.Pro114ArgfsTer5	p.P114Rfs*5	ENST00000228872	NM_004064.3	113	cgC/cg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845361	151845361	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	77	361	0	ENST00000262189.6:c.13651G>C	p.Gly4551Arg	p.G4551R	ENST00000262189	NM_170606.2	4551	Ggt/Cgt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0038278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	32	244	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	23	518	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242494	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAGCAACATCTCCGAAAGC	TTAAGAGAAGCAACATCTCCGAAAGC	GCCAA			P-0038282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	16	343	1	ENST00000275493.2:c.2239_2264delinsGCCAA	p.Leu747_Ala755delinsAlaAsn	p.L747_A755delinsAN	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAACATCTCCGAAAGCc/GCCAAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47084144	47084144	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	48	279	0	ENST00000409792.3:c.7145C>G	p.Ser2382Cys	p.S2382C	ENST00000409792	NM_014159.6	2382	tCt/tGt																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799737	72799737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	34	355	0	ENST00000325599.8:c.1432G>C	p.Asp478His	p.D478H	ENST00000325599	NM_018130.2	478	Gat/Cat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221820	55221822	+	missense_variant	Missense_Mutation	ONP	TGC	TGC	GTA			P-0038283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	144	482	1	ENST00000275493.2:c.864_866delinsGTA	p.Ala289Tyr	p.A289Y	ENST00000275493	NM_005228.3	288	ggTGCc/ggGTAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98224209	98224209	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	53	224	0	ENST00000331920.6:c.2632G>T	p.Asp878Tyr	p.D878Y	ENST00000331920	NM_000264.3	878	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0038288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	85	1107	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46125094	46125095	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	32	201	0	ENST00000334344.6:c.282dup	p.Arg95AlafsTer16	p.R95Afs*16	ENST00000334344	NM_152641.2	94	ttg/ttGg																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514236	69514236	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	85	968	0	ENST00000294312.3:c.445A>G	p.Lys149Glu	p.K149E	ENST00000294312	NM_005117.2	149	Aaa/Gaa																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197196	26197196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	94	522	0	ENST00000356476.2:c.283G>A	p.Glu95Lys	p.E95K	ENST00000356476		95	Gag/Aag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0038289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	396	805	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060939	38060940	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1421	163	568	0	ENST00000250448.2:c.1049dup	p.Thr351AspfsTer64	p.T351Dfs*64	ENST00000250448	NM_004496.3	350	aag/aaAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7573977	7574014	+	frameshift_variant	Frame_Shift_Del	DEL	GAGTTCCAAGGCCTCATTCAGCTCTCGGAACATCTCGA	GAGTTCCAAGGCCTCATTCAGCTCTCGGAACATCTCGA	CAGT			P-0038289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	308	929	2	ENST00000269305.4:c.1013_1050delinsACTG	p.Phe338TyrfsTer2	p.F338Yfs*2	ENST00000269305	NM_001126112.2	338	tTCGAGATGTTCCGAGAGCTGAATGAGGCCTTGGAACTC/tACTG																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166298	32166298	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	101	880	3	ENST00000375023.3:c.4656G>A	p.Trp1552Ter	p.W1552*	ENST00000375023	NM_004557.3	1552	tgG/tgA																																																																															
PREX2	80243	MSKCC	GRCh37	8	69005944	69005944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	35	545	0	ENST00000288368.4:c.2355C>A	p.Asp785Glu	p.D785E	ENST00000288368	NM_024870.2	785	gaC/gaA																																																																															
BTK	695	MSKCC	GRCh37	X	100630203	100630203	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	95	251	0	ENST00000308731.7:c.70A>C	p.Asn24His	p.N24H	ENST00000308731	NM_000061.2	24	Aac/Cac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	16	455	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	22	452	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0038290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	32	226	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
AR	367	MSKCC	GRCh37	X	66765403	66765403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	62	432	2	ENST00000374690.3:c.415G>A	p.Val139Met	p.V139M	ENST00000374690	NM_000044.3	139	Gtg/Atg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86668007	86668007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	27	267	0	ENST00000274376.6:c.1771C>T	p.Arg591Cys	p.R591C	ENST00000274376	NM_002890.2	591	Cgt/Tgt																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139818391	139818393	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0038290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	70	897	0	ENST00000247668.2:c.1230_1232delCTT	p.Phe411del	p.F411del	ENST00000247668	NM_021138.3	409	cTCTtc/ctc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	45	428	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0038292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	68	875	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0038299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	11	512	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0038299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	13	489	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260150	149260150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	64	395	1	ENST00000360632.3:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000360632	NM_015472.4	248	cGa/cAa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858476	57858476	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199685332		P-0038312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	121	538	1	ENST00000228682.2:c.214C>T	p.Arg72Trp	p.R72W	ENST00000228682	NM_005269.2	72	Cgg/Tgg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0038312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	98	467	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967146	25967146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	79	363	0	ENST00000435504.4:c.2060G>A	p.Gly687Glu	p.G687E	ENST00000435504		687	gGa/gAa																																																																															
ATM	472	MSKCC	GRCh37	11	108199873	108199873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	43	166	0	ENST00000278616.4:c.7215G>A	p.Met2405Ile	p.M2405I	ENST00000278616	NM_000051.3	2405	atG/atA																																																																															
APC	324	MSKCC	GRCh37	5	112178747	112178747	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	106	370	0	ENST00000257430.4:c.7457del	p.Pro2486LeufsTer30	p.P2486Lfs*30	ENST00000257430	NM_000038.5	2486	Cct/ct																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672594	30672596	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0038312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	118	597	0	ENST00000376406.3:c.4364_4366del	p.Leu1455del	p.L1455del	ENST00000376406	NM_014641.2	1455	cTCCag/cag																																																																															
ATRX	546	MSKCC	GRCh37	X	76938617	76938617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	167	497	0	ENST00000373344.5:c.2131C>T	p.Pro711Ser	p.P711S	ENST00000373344	NM_000489.3	711	Cct/Tct																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026810	6026810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	70	342	0	ENST00000265849.7:c.1586C>T	p.Ser529Leu	p.S529L	ENST00000265849	NM_000535.5	529	tCg/tTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444204	49444204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	140	901	2	ENST00000301067.7:c.3167G>A	p.Ser1056Asn	p.S1056N	ENST00000301067	NM_003482.3	1056	aGt/aAt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098024	178098024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	62	349	0	ENST00000397062.3:c.356G>A	p.Cys119Tyr	p.C119Y	ENST00000397062	NM_006164.4	119	tGc/tAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249445	153249445	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	155	535	0	ENST00000281708.4:c.1333G>C	p.Val445Leu	p.V445L	ENST00000281708	NM_033632.3	445	Gtg/Ctg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	54	457	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ATR	545	MSKCC	GRCh37	3	142215224	142215224	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	70	386	0	ENST00000350721.4:c.5877G>T	p.Arg1959Ser	p.R1959S	ENST00000350721	NM_001184.3	1959	agG/agT																																																																															
STAG2	10735	MSKCC	GRCh37	X	123184119	123184119	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	46	361	0	ENST00000218089.9:c.977A>G	p.Asp326Gly	p.D326G	ENST00000218089	NM_001042749.1	326	gAc/gGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	56	437	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589584	67589589	+	inframe_deletion	In_Frame_Del	DEL	ACATGA	ACATGA	-			P-0038347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	34	275	0	ENST00000274335.5:c.1348_1353del	p.His450_Glu451del	p.H450_E451del	ENST00000274335		449	ttACATGAa/tta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0038347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	230	855	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
DICER1	23405	MSKCC	GRCh37	14	95598956	95598956	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	88	416	0	ENST00000343455.3:c.203C>A	p.Ser68Ter	p.S68*	ENST00000343455	NM_177438.2	68	tCa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112173728	112173728	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	135	354	0	ENST00000257430.4:c.2438del	p.Asn813IlefsTer7	p.N813Ifs*7	ENST00000257430	NM_000038.5	813	Aat/at																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411492	63411493	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	226	449	0	ENST00000330258.3:c.1674dup	p.Glu559ArgfsTer21	p.E559Rfs*21	ENST00000330258	NM_152424.3	558	-/A																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	114	578	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	39	570	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																															
SDHA	6389	MSKCC	GRCh37	5	226017	226017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	27	179	1	ENST00000264932.6:c.476C>T	p.Pro159Leu	p.P159L	ENST00000264932	NM_004168.2	159	cCg/cTg																																																																															
PARP1	142	MSKCC	GRCh37	1	226570793	226570793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	83	655	0	ENST00000366794.5:c.1103C>T	p.Thr368Met	p.T368M	ENST00000366794	NM_001618.3	368	aCg/aTg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71090575	71090575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	35	588	1	ENST00000318789.4:c.773G>A	p.Cys258Tyr	p.C258Y	ENST00000318789	NM_032682.5	258	tGt/tAt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129157	152129157	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	67	859	0	ENST00000206249.3:c.110G>C	p.Arg37Pro	p.R37P	ENST00000206249	NM_000125.3	37	cGg/cCg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	68	283	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28611336	28611336	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201905189		P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	64	319	0	ENST00000241453.7:c.1295C>T	p.Thr432Met	p.T432M	ENST00000241453	NM_004119.2	432	aCg/aTg																																																																															
ATM	472	MSKCC	GRCh37	11	108216476	108216477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	24	166	0	ENST00000278616.4:c.8432dupA	p.Ser2812ValfsTer3	p.S2812Vfs*3	ENST00000278616	NM_000051.3	2809	caa/cAaa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588981	67588981	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	32	214	0	ENST00000274335.5:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000274335		358	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108183190	108183191	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	26	202	0	ENST00000278616.4:c.5977dupA	p.Ser1993LysfsTer2	p.S1993Kfs*2	ENST00000278616	NM_000051.3	1991	gaa/gAaa																																																																															
PGR	5241	MSKCC	GRCh37	11	100962543	100962544	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	115	362	0	ENST00000325455.5:c.1853dup	p.Asn618LysfsTer8	p.N618Kfs*8	ENST00000325455	NM_001202474.3	618	aac/aaAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156540	55156540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	138	437	1	ENST00000257290.5:c.2941C>T	p.Arg981Cys	p.R981C	ENST00000257290	NM_006206.4	981	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106036	27106037	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	116	448	0	ENST00000324856.7:c.5648dup	p.Thr1884AsnfsTer17	p.T1884Nfs*17	ENST00000324856	NM_006015.4	1883	aca/aCca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106746	27106746	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	196	541	0	ENST00000324856.7:c.6358del	p.Glu2120LysfsTer15	p.E2120Kfs*15	ENST00000324856	NM_006015.4	2119	ttG/tt																																																																															
CARM1	10498	MSKCC	GRCh37	19	11018787	11018787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	265	691	0	ENST00000327064.4:c.419G>A	p.Arg140Gln	p.R140Q	ENST00000327064	NM_199141.1	140	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211853	36211853	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs527331134		P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	276	768	1	ENST00000222270.7:c.1604G>A	p.Arg535His	p.R535H	ENST00000222270	NM_014727.1	535	cGc/cAc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665078	138665078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	98	192	0	ENST00000330315.3:c.487G>A	p.Gly163Ser	p.G163S	ENST00000330315	NM_023067.3	163	Ggc/Agc																																																																															
ATR	545	MSKCC	GRCh37	3	142185363	142185363	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	34	213	0	ENST00000350721.4:c.6700A>T	p.Ser2234Cys	p.S2234C	ENST00000350721	NM_001184.3	2234	Agt/Tgt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430434	181430434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	254	635	1	ENST00000325404.1:c.286C>T	p.Arg96Trp	p.R96W	ENST00000325404	NM_003106.3	96	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0038224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	203	647	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0038224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	57	258	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	10	555	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940222	49940222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	58	738	2	ENST00000296474.3:c.821G>A	p.Ser274Asn	p.S274N	ENST00000296474	NM_002447.2	274	aGt/aAt																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867041	45867041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	243	571	0	ENST00000391945.4:c.1078G>A	p.Gly360Ser	p.G360S	ENST00000391945	NM_000400.3	360	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	302	940	0	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441436	52441436	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	55	492	0	ENST00000460680.1:c.416del	p.Lys139ArgfsTer48	p.K139Rfs*48	ENST00000460680	NM_004656.3	139	aAg/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	197	437	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0038260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	230	705	1	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044967	47044967	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	227	708	0	ENST00000329236.7:c.2059C>T	p.Arg687Ter	p.R687*	ENST00000329236	NM_001204466.1	687	Cga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1223057	1223063	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCGCA	TGGCGCA	GGGCG			P-0038260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	310	700	2	ENST00000326873.7:c.994_1000delinsGGGCG	p.Trp332GlyfsTer27	p.W332Gfs*27	ENST00000326873	NM_000455.4	332	TGGCGCAgc/GGGCGgc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602417	10602418	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	308	762	0	ENST00000171111.5:c.1160dup	p.Asn387LysfsTer28	p.N387Kfs*28	ENST00000171111	NM_203500.1	387	aac/aaAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0038266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	445	406	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579494	7579494	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0038266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	666	756	2	ENST00000269305.4:c.193A>T	p.Arg65Ter	p.R65*	ENST00000269305	NM_001126112.2	65	Aga/Tga																																																																															
RB1	5925	MSKCC	GRCh37	13	48878151	48878151	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	59	118	1	ENST00000267163.4:c.103C>T	p.Gln35Ter	p.Q35*	ENST00000267163	NM_000321.2	35	Cag/Tag																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27777925	27777925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	154	372	0	ENST00000369163.2:c.74C>T	p.Ala25Val	p.A25V	ENST00000369163	NM_003536.2	25	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540652		P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	130	532	2	ENST00000269305.4:c.743G>C	p.Arg248Pro	p.R248P	ENST00000269305	NM_001126112.2	248	cGg/cCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	30	427	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539513	187539513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	29	379	0	ENST00000441802.2:c.8227C>T	p.Pro2743Ser	p.P2743S	ENST00000441802	NM_005245.3	2743	Cca/Tca																																																																															
STK11	6794	MSKCC	GRCh37	19	1220506	1220506	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	75	635	0	ENST00000326873.7:c.597+2T>A		p.X199_splice	ENST00000326873	NM_000455.4	199																																																																																
DNMT1	1786	MSKCC	GRCh37	19	10249229	10249229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	80	593	0	ENST00000340748.4:c.3953C>T	p.Ala1318Val	p.A1318V	ENST00000340748		1318	gCg/gTg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739391	46739391	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	60	445	0	ENST00000371975.4:c.1582C>G	p.Leu528Val	p.L528V	ENST00000371975	NM_003579.3	528	Ctc/Gtc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610369	10610369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	118	689	1	ENST00000171111.5:c.341G>T	p.Gly114Val	p.G114V	ENST00000171111	NM_203500.1	114	gGg/gTg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45871956	45871956	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	60	620	0	ENST00000391945.4:c.292G>T	p.Glu98Ter	p.E98*	ENST00000391945	NM_000400.3	98	Gag/Tag																																																																															
ALK	238	MSKCC	GRCh37	2	30142950	30142950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	90	695	0	ENST00000389048.3:c.576G>T	p.Glu192Asp	p.E192D	ENST00000389048	NM_004304.4	192	gaG/gaT																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561250	9561250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	70	471	0	ENST00000353224.5:c.532G>T	p.Gly178Trp	p.G178W	ENST00000353224	NM_177990.2	178	Ggg/Tgg																																																																															
EP300	2033	MSKCC	GRCh37	22	41533686	41533686	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	65	522	0	ENST00000263253.7:c.1652C>G	p.Pro551Arg	p.P551R	ENST00000263253	NM_001429.3	551	cCc/cGc																																																																															
ATR	545	MSKCC	GRCh37	3	142272756	142272756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	56	513	0	ENST00000350721.4:c.2443G>T	p.Asp815Tyr	p.D815Y	ENST00000350721	NM_001184.3	815	Gat/Tat																																																																															
ATRX	546	MSKCC	GRCh37	X	76939030	76939030	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	53	550	0	ENST00000373344.5:c.1718G>T	p.Gly573Val	p.G573V	ENST00000373344	NM_000489.3	573	gGt/gTt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	147	438	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	123	294	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	94	300	1	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
APC	324	MSKCC	GRCh37	5	112175970	112175970	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	58	230	0	ENST00000257430.4:c.4682delA	p.Lys1561ArgfsTer4	p.K1561Rfs*4	ENST00000257430	NM_000038.5	1560	gAa/ga																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	128	362	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	96	227	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	36	110	0	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238958	5238958	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	99	396	0	ENST00000357368.4:c.1821delC	p.Val608TrpfsTer30	p.V608Wfs*30	ENST00000357368	NM_002850.3	607	ccC/cc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	205	611	2	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59885956	59885956	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28997569		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	160	401	0	ENST00000259008.2:c.790C>T	p.Arg264Trp	p.R264W	ENST00000259008	NM_032043.2	264	Cgg/Tgg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	83	568	5	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	178	498	2	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	80	323	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	138	431	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
CASP8	841	MSKCC	GRCh37	2	202149917	202149917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	145	522	1	ENST00000358485.4:c.1358C>T	p.Pro453Leu	p.P453L	ENST00000358485	NM_001080125.1	453	cCg/cTg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40375459	40375459	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	52	482	0	ENST00000293328.3:c.491del	p.Lys164SerfsTer17	p.K164Sfs*17	ENST00000293328	NM_012448.3	164	aAg/ag																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905055	50905055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	111	412	0	ENST00000440232.2:c.342delG	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	113	Ggg/gg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117854	70117854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	53	424	0	ENST00000245479.2:c.322C>T	p.Pro108Ser	p.P108S	ENST00000245479	NM_000346.3	108	Ccc/Tcc																																																																															
POLE	5426	MSKCC	GRCh37	12	133220098	133220099	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	155	548	2	ENST00000320574.5:c.4337_4338dup	p.Val1447TrpfsTer7	p.V1447Wfs*7	ENST00000320574	NM_006231.2	1446	-/TG																																																																															
CIC	23152	MSKCC	GRCh37	19	42799131	42799131	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	157	592	0	ENST00000575354.2:c.4620delC	p.Thr1541LeufsTer79	p.T1541Lfs*79	ENST00000575354	NM_015125.3	1539	Ccc/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821620	72821620	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751386892		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	20	50	0	ENST00000268489.5:c.10555G>A	p.Gly3519Ser	p.G3519S	ENST00000268489	NM_006885.3	3519	Ggt/Agt																																																																															
ATR	545	MSKCC	GRCh37	3	142269072	142269072	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	148	305	0	ENST00000350721.4:c.2878C>T	p.Arg960Ter	p.R960*	ENST00000350721	NM_001184.3	960	Cga/Tga																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324892	31324892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs765875917		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	82	160	0	ENST00000412585.2:c.44del	p.Ala15GlyfsTer5	p.A15Gfs*5	ENST00000412585	NM_005514.6	15	gCg/gg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	187	655	5	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	152	400	10	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	171	616	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120148	70120148	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	61	221	0	ENST00000245479.2:c.1150A>G	p.Thr384Ala	p.T384A	ENST00000245479	NM_000346.3	384	Acg/Gcg																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733223	74733223	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	127	439	0	ENST00000359995.5:c.20del	p.Pro7LeufsTer7	p.P7Lfs*7	ENST00000359995	NM_001195427.1	7	cCt/ct																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998128	169998128	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs753143066		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	174	574	4	ENST00000295797.4:c.826del	p.Thr276GlnfsTer7	p.T276Qfs*7	ENST00000295797	NM_002740.5	273	ttA/tt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569955	95569955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	91	329	0	ENST00000343455.3:c.3778G>A	p.Val1260Ile	p.V1260I	ENST00000343455	NM_177438.2	1260	Gta/Ata																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425124	49425124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	221	602	0	ENST00000301067.7:c.13364G>A	p.Arg4455His	p.R4455H	ENST00000301067	NM_003482.3	4455	cGc/cAc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39726940	39726940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	83	202	0	ENST00000361337.2:c.938C>T	p.Thr313Met	p.T313M	ENST00000361337	NM_003286.2	313	aCg/aTg																																																																															
ABL1	25	MSKCC	GRCh37	9	133756012	133756012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	144	409	1	ENST00000318560.5:c.1639G>A	p.Val547Met	p.V547M	ENST00000318560	NM_005157.4	547	Gtg/Atg																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84393376	84393376	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	91	242	0	ENST00000321945.7:c.281del	p.Lys94ArgfsTer4	p.K94Rfs*4	ENST00000321945	NM_139076.2	94	aAg/ag																																																																															
LYN	4067	MSKCC	GRCh37	8	56863053	56863054	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	88	421	0	ENST00000519728.1:c.327dup	p.Glu110ArgfsTer40	p.E110Rfs*40	ENST00000519728	NM_002350.3	107	aca/acAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953633	32953633	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	99	337	0	ENST00000380152.3:c.8940del	p.Glu2981LysfsTer7	p.E2981Kfs*7	ENST00000380152		2978	tcA/tc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148507423	148507423	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	85	238	0	ENST00000320356.2:c.2029+2T>C		p.X677_splice	ENST00000320356	NM_004456.4	677																																																																																
RTEL1	51750	MSKCC	GRCh37	20	62325754	62325754	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145335410		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	145	470	0	ENST00000508582.2:c.3094G>A	p.Val1032Met	p.V1032M	ENST00000508582		1032	Gtg/Atg																																																																															
INSR	3643	MSKCC	GRCh37	19	7117191	7117191	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	151	532	0	ENST00000302850.5:c.4025del	p.Gly1342AlafsTer23	p.G1342Afs*23	ENST00000302850	NM_000208.2	1342	gGc/gc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41249283	41249283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	189	299	0	ENST00000357654.3:c.571G>A	p.Val191Ile	p.V191I	ENST00000357654	NM_007294.3	191	Gtt/Att																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9778894	9778894	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	168	479	0	ENST00000377346.4:c.1165del	p.Arg389ValfsTer9	p.R389Vfs*9	ENST00000377346	NM_005026.3	388	gCc/gc																																																																															
MPL	4352	MSKCC	GRCh37	1	43812238	43812238	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	109	426	0	ENST00000372470.3:c.1103T>C	p.Val368Ala	p.V368A	ENST00000372470	NM_005373.2	368	gTg/gCg																																																																															
PARP1	142	MSKCC	GRCh37	1	226590047	226590047	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	138	487	0	ENST00000366794.5:c.154T>C	p.Tyr52His	p.Y52H	ENST00000366794	NM_001618.3	52	Tac/Cac																																																																															
SUFU	51684	MSKCC	GRCh37	10	104353782	104353782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	138	424	0	ENST00000369902.3:c.716G>A	p.Arg239Gln	p.R239Q	ENST00000369902	NM_016169.3	239	cGg/cAg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999149	100999149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	127	598	1	ENST00000325455.5:c.653C>T	p.Ala218Val	p.A218V	ENST00000325455	NM_001202474.3	218	gCg/gTg																																																																															
ATM	472	MSKCC	GRCh37	11	108139213	108139213	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	171	471	1	ENST00000278616.4:c.2717del	p.Leu906CysfsTer3	p.L906Cfs*3	ENST00000278616	NM_000051.3	905	tgT/tg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	498103	498103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	125	327	0	ENST00000399788.2:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000399788	NM_001042603.1	52	cGg/cAg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641409	18641409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	29	182	0	ENST00000266497.5:c.2408C>T	p.Ala803Val	p.A803V	ENST00000266497		803	gCt/gTt																																																																															
POLE	5426	MSKCC	GRCh37	12	133249393	133249393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	151	396	0	ENST00000320574.5:c.1506G>T	p.Glu502Asp	p.E502D	ENST00000320574	NM_006231.2	502	gaG/gaT																																																																															
MGA	23269	MSKCC	GRCh37	15	42052627	42052627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	175	341	0	ENST00000219905.7:c.7298G>A	p.Arg2433Gln	p.R2433Q	ENST00000219905	NM_001164273.1	2433	cGg/cAg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40481600	40481600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	44	451	0	ENST00000264657.5:c.1205G>A	p.Gly402Asp	p.G402D	ENST00000264657	NM_139276.2	402	gGc/gAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435761	56435761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	114	371	0	ENST00000407977.2:c.1376C>T	p.Ala459Val	p.A459V	ENST00000407977		459	gCa/gTa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119815	70119816	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	165	497	0	ENST00000245479.2:c.818dup	p.Asp274GlyfsTer22	p.D274Gfs*22	ENST00000245479	NM_000346.3	273	gtg/gTtg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229609	5229609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	22	46	0	ENST00000357368.4:c.2242C>T	p.Arg748Trp	p.R748W	ENST00000357368	NM_002850.3	748	Cgg/Tgg																																																																															
EP300	2033	MSKCC	GRCh37	22	41556645	41556645	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	116	293	0	ENST00000263253.7:c.3591-1G>A		p.X1197_splice	ENST00000263253	NM_001429.3	1197																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266877	41266877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	29	292	0	ENST00000349496.5:c.548C>T	p.Ala183Val	p.A183V	ENST00000349496	NM_001904.3	183	gCt/gTt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93969147	93969147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	86	286	0	ENST00000369303.4:c.1849C>T	p.Pro617Ser	p.P617S	ENST00000369303	NM_004440.3	617	Cca/Tca																																																																															
FYN	2534	MSKCC	GRCh37	6	112015614	112015614	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	136	326	0	ENST00000368678.4:c.1228C>T	p.Arg410Ter	p.R410*	ENST00000368678		410	Cga/Tga																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271764	38271764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	153	624	0	ENST00000425967.3:c.2185G>A	p.Gly729Ser	p.G729S	ENST00000425967	NM_001174067.1	729	Ggc/Agc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36923410	36923410	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	188	575	0	ENST00000358127.4:c.852del	p.Thr285ProfsTer18	p.T285Pfs*18	ENST00000358127	NM_001280556.1	284	ccC/cc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393629	139393629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	195	622	1	ENST00000277541.6:c.6017C>T	p.Ala2006Val	p.A2006V	ENST00000277541	NM_017617.3	2006	gCc/gTc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	85	544	0	ENST00000347630.2:c.392G>T	p.Trp131Leu	p.W131L	ENST00000347630	NM_001007230.1	131	tGg/tTg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45371857	45371857	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0038160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	53	348	1	ENST00000262160.6:c.1136-2A>G		p.X379_splice	ENST00000262160	NM_005901.5	379																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	224	393	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346365	73346365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	58	304	0	ENST00000377767.4:c.1435G>T	p.Asp479Tyr	p.D479Y	ENST00000377767	NM_014953.3	479	Gac/Tac																																																																															
CUL3	8452	MSKCC	GRCh37	2	225378306	225378306	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	74	310	0	ENST00000264414.4:c.589G>T	p.Gly197Ter	p.G197*	ENST00000264414	NM_003590.4	197	Gga/Tga																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324509	31324509	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs41553715		P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	12	50	0	ENST00000412585.2:c.299A>T	p.Glu100Val	p.E100V	ENST00000412585	NM_005514.6	100	gAg/gTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295755	212295755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	52	463	0	ENST00000342788.4:c.2558C>T	p.Ser853Phe	p.S853F	ENST00000342788	NM_005235.2	853	tCt/tTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006897	47006897	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	186	705	0	ENST00000329236.7:c.17G>T	p.Arg6Leu	p.R6L	ENST00000329236	NM_001204466.1	6	cGt/cTt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115266549	115266549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	184	528	0	ENST00000438362.2:c.1966C>T	p.Pro656Ser	p.P656S	ENST00000438362	NM_001242891.1	656	Cca/Tca																																																																															
ARID2	196528	MSKCC	GRCh37	12	46240663	46240663	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	46	302	0	ENST00000334344.6:c.1523A>C	p.His508Pro	p.H508P	ENST00000334344	NM_152641.2	508	cAt/cCt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437508	49437508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	247	631	0	ENST00000301067.7:c.5377G>T	p.Gly1793Trp	p.G1793W	ENST00000301067	NM_003482.3	1793	Ggg/Tgg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061009	38061009	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	226	351	0	ENST00000250448.2:c.980G>T	p.Gly327Val	p.G327V	ENST00000250448	NM_004496.3	327	gGg/gTg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609565	81609565	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	72	529	0	ENST00000298171.2:c.1163C>G	p.Thr388Ser	p.T388S	ENST00000298171	NM_000369.2	388	aCc/aGc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609626	81609626	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	89	576	0	ENST00000298171.2:c.1224T>A	p.Cys408Ter	p.C408*	ENST00000298171	NM_000369.2	408	tgT/tgA																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88669536	88669536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	57	490	0	ENST00000360948.2:c.1362C>A	p.Asn454Lys	p.N454K	ENST00000360948	NM_001012338.2	454	aaC/aaA																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923449	9923449	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	170	575	0	ENST00000330684.3:c.1838T>A	p.Phe613Tyr	p.F613Y	ENST00000330684	NM_001134407.1	613	tTc/tAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923773	72923773	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	111	620	0	ENST00000268489.5:c.3305A>T	p.Asn1102Ile	p.N1102I	ENST00000268489	NM_006885.3	1102	aAc/aTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29528428	29528428	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	118	327	0	ENST00000358273.4:c.1186-1G>C		p.X396_splice	ENST00000358273	NM_001042492.2	396																																																																																
NF1	4763	MSKCC	GRCh37	17	29684345	29684345	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	84	464	0	ENST00000358273.4:c.7928T>A	p.Leu2643Ter	p.L2643*	ENST00000358273	NM_001042492.2	2643	tTa/tAa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965713	25965713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	197	664	0	ENST00000435504.4:c.3493G>T	p.Asp1165Tyr	p.D1165Y	ENST00000435504		1165	Gac/Tac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521664	89521664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	151	493	0	ENST00000336596.2:c.2741G>T	p.Arg914Leu	p.R914L	ENST00000336596	NM_005233.5	914	cGc/cTc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134898726	134898726	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	105	318	0	ENST00000398015.3:c.1784T>C	p.Ile595Thr	p.I595T	ENST00000398015	NM_004441.4	595	aTt/aCt																																																																															
ATR	545	MSKCC	GRCh37	3	142185376	142185376	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	57	264	0	ENST00000350721.4:c.6688-1G>T		p.X2230_splice	ENST00000350721	NM_001184.3	2230																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66467487	66467487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	143	339	0	ENST00000273854.3:c.782C>A	p.Ser261Tyr	p.S261Y	ENST00000273854	NM_004439.5	261	tCc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112173667	112173667	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	93	355	0	ENST00000257430.4:c.2376del	p.Lys792AsnfsTer28	p.K792Nfs*28	ENST00000257430	NM_000038.5	792	aaG/aa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486227	8486227	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	132	399	0	ENST00000356435.5:c.2590G>C	p.Asp864His	p.D864H	ENST00000356435		864	Gat/Cat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032557	47032557	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	146	658	1	ENST00000329236.7:c.232C>T	p.Gln78Ter	p.Q78*	ENST00000329236	NM_001204466.1	78	Caa/Taa																																																																															
XIAP	331	MSKCC	GRCh37	X	123026618	123026618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	143	486	0	ENST00000355640.3:c.1094G>T	p.Arg365Ile	p.R365I	ENST00000355640		365	aGa/aTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	125	384	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0038168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	107	229	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	28	363	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250883	153250883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	117	331	2	ENST00000281708.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000281708	NM_033632.3	393	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	88	211	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	216	412	4	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	267	700	1	ENST00000269305.4:c.388del	p.Leu130SerfsTer40	p.L130Sfs*40	ENST00000269305	NM_001126112.2	130	Ctc/tc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127460	55127460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	252	446	7	ENST00000257290.5:c.248C>T	p.Thr83Met	p.T83M	ENST00000257290	NM_006206.4	83	aCg/aTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245462	153245462	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	199	425	1	ENST00000281708.4:c.1729T>G	p.Leu577Val	p.L577V	ENST00000281708	NM_033632.3	577	Tta/Gta																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478927	56478927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	360	539	1	ENST00000267101.3:c.383G>T	p.Ser128Ile	p.S128I	ENST00000267101	NM_001982.3	128	aGc/aTc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	334	696	0	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	368	408	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99185041	99185041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	146	540	0	ENST00000074304.5:c.2443G>A	p.Asp815Asn	p.D815N	ENST00000074304	NM_001134224.1	815	Gat/Aat																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852565	63852565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	233	629	0	ENST00000279873.7:c.3343C>T	p.Leu1115Phe	p.L1115F	ENST00000279873	NM_032199.2	1115	Ctc/Ttc																																																																															
RARA	5914	MSKCC	GRCh37	17	38508661	38508661	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	295	884	0	ENST00000254066.5:c.709A>G	p.Ile237Val	p.I237V	ENST00000254066	NM_000964.3	237	Att/Gtt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435814	56435832	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGGGCCTGGCCCGGCGT	AGGGGGCCTGGCCCGGCGT	-			P-0038190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	224	680	0	ENST00000407977.2:c.1305_1323del	p.Arg436ThrfsTer60	p.R436Tfs*60	ENST00000407977		435	ctACGCCGGGCCAGGCCCCCT/ct																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987254	2987254	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	372	684	0	ENST00000396946.4:c.175G>C	p.Glu59Gln	p.E59Q	ENST00000396946	NM_032415.4	59	Gaa/Caa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	536	638	0	ENST00000369535.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000369535	NM_002524.4	12	gGt/gCt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285694	87285694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	771	824	0	ENST00000277120.3:c.31G>A	p.Ala11Thr	p.A11T	ENST00000277120		11	Gcc/Acc																																																																															
SMO	6608	MSKCC	GRCh37	7	128845590	128845590	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772693769		P-0038195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	734	766	5	ENST00000249373.3:c.887G>A	p.Arg296His	p.R296H	ENST00000249373	NM_005631.4	296	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577477	7577502	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGGTGGCAAGTGGCTCCTGACCTGG	AGGGTGGCAAGTGGCTCCTGACCTGG	-			P-0038195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	334	703	0	ENST00000269305.4:c.779_782+22del		p.X260_splice	ENST00000269305	NM_001126112.2	260																																																																																
MALT1	10892	MSKCC	GRCh37	18	56400691	56400691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	168	509	4	ENST00000348428.3:c.1285G>T	p.Asp429Tyr	p.D429Y	ENST00000348428	NM_006785.3	429	Gat/Tat																																																																															
EP300	2033	MSKCC	GRCh37	22	41574814	41574814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	511	916	2	ENST00000263253.7:c.7099C>A	p.Pro2367Thr	p.P2367T	ENST00000263253	NM_001429.3	2367	Ccg/Acg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39937133	39937133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1195	123	540	0	ENST00000378444.4:c.50G>T	p.Ser17Ile	p.S17I	ENST00000378444	NM_001123385.1	17	aGc/aTc																																																																															
APC	324	MSKCC	GRCh37	5	112175477	112175479	+	frameshift_variant	Frame_Shift_Del	DEL	TTT	TTT	A			P-0038195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	349	480	0	ENST00000257430.4:c.4186_4188delinsA	p.Phe1396ArgfsTer12	p.F1396Rfs*12	ENST00000257430	NM_000038.5	1396	TTT/A																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851574	134851574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	206	680	0	ENST00000398015.3:c.980G>A	p.Arg327His	p.R327H	ENST00000398015	NM_004441.4	327	cGc/cAc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50921167	50921167	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1322	301	944	2	ENST00000440232.2:c.3287T>A	p.Leu1096Gln	p.L1096Q	ENST00000440232	NM_002691.3	1096	cTg/cAg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31395598	31395598	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	264	895	0	ENST00000328111.2:c.2451C>G	p.Asp817Glu	p.D817E	ENST00000328111	NM_006892.3	817	gaC/gaG																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67593331	67593331	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	166	514	0	ENST00000274335.5:c.2077G>T	p.Glu693Ter	p.E693*	ENST00000274335		693	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175940	112175940	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	240	394	0	ENST00000257430.4:c.4649del	p.Glu1550GlyfsTer15	p.E1550Gfs*15	ENST00000257430	NM_000038.5	1550	gAg/gg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0038202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	185	465	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0038202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	143	508	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0038202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	511	837	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0038202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	107	390	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467748	50467748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	144	679	0	ENST00000331340.3:c.983G>A	p.Arg328His	p.R328H	ENST00000331340	NM_006060.4	328	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175681	112175682	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	137	479	0	ENST00000257430.4:c.4391dupA	p.Ser1465GlufsTer4	p.S1465Efs*4	ENST00000257430	NM_000038.5	1464	gag/gAag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411786	63411786	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	476	936	1	ENST00000330258.3:c.1381C>T	p.Gln461Ter	p.Q461*	ENST00000330258	NM_152424.3	461	Caa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0038205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	317	306	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0038205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	260	620	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
KIT	3815	MSKCC	GRCh37	4	55561767	55561767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	59	289	0	ENST00000288135.5:c.157G>A	p.Glu53Lys	p.E53K	ENST00000288135	NM_000222.2	53	Gag/Aag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637115	176637115	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	134	562	0	ENST00000439151.2:c.1715C>G	p.Ser572Cys	p.S572C	ENST00000439151	NM_022455.4	572	tCc/tGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0038206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	9	317	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044699	47044699	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0038206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	28	378	0	ENST00000329236.7:c.1867-2A>T		p.X623_splice	ENST00000329236	NM_001204466.1	623																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0038207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	207	662	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0038207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	260	473	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78867632	78867632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	218	733	1	ENST00000306801.3:c.2368G>A	p.Ala790Thr	p.A790T	ENST00000306801	NM_020761.2	790	Gcc/Acc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	493220	493220	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	106	368	0	ENST00000399788.2:c.343C>G	p.Leu115Val	p.L115V	ENST00000399788	NM_001042603.1	115	Ctg/Gtg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435889	56435889	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	156	514	1	ENST00000407977.2:c.1248G>A	p.Trp416Ter	p.W416*	ENST00000407977		416	tgG/tgA																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272335	15272335	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	189	844	0	ENST00000263388.2:c.6104del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2035	gGt/gt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	202	305	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	198	485	0	ENST00000269305.4:c.730G>C	p.Gly244Arg	p.G244R	ENST00000269305	NM_001126112.2	244	Ggc/Cgc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948654	71948655	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0038208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	121	695	1	ENST00000298229.2:c.3366_3367delinsTT	p.Val1123Leu	p.V1123L	ENST00000298229	NM_001567.3	1122	tcGGtg/tcTTtg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118345013	118345013	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	21	218	0	ENST00000534358.1:c.3139G>T	p.Asp1047Tyr	p.D1047Y	ENST00000534358	NM_005933.3	1047	Gac/Tac																																																																															
MGA	23269	MSKCC	GRCh37	15	42040835	42040835	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0038208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	62	304	0	ENST00000219905.7:c.5213A>C	p.Glu1738Ala	p.E1738A	ENST00000219905	NM_001164273.1	1738	gAa/gCa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467927	50467927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	78	471	0	ENST00000331340.3:c.1162G>A	p.Ala388Thr	p.A388T	ENST00000331340	NM_006060.4	388	Gcg/Acg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102206751	102206753	+	missense_variant	Missense_Mutation	ONP	GTG	GTG	TTT			P-0038208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	50	338	0	ENST00000263464.3:c.1379_1381delinsTTT	p.Cys460_Val461delinsPheLeu	p.C460_V461delinsFL	ENST00000263464	NM_001165.4	460	tGTGta/tTTTta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	65	330	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0038210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	100	469	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81332010	81332010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	47	289	0	ENST00000222390.5:c.2074G>T	p.Val692Phe	p.V692F	ENST00000222390	NM_000601.4	692	Gtt/Ttt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593357	48593397	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGATAAAATGTAATTTCTTTTTTCTTCCTAAGGTTGCACAT	AGATAAAATGTAATTTCTTTTTTCTTCCTAAGGTTGCACAT	-			P-0038210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	43	165	0	ENST00000342988.3:c.1140-30_1150del		p.X380_splice	ENST00000342988	NM_005359.5	380																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48593405	48593406	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0038210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	16	275	0	ENST00000342988.3:c.1160_1161dup	p.Gln388CysfsTer28	p.Q388Cfs*28	ENST00000342988	NM_005359.5	386	ggt/gGTgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0038213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	54	297	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0038213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	21	700	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0038213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	34	652	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68844246	68844246	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0038213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	66	455	0	ENST00000261769.5:c.832+2T>C		p.X278_splice	ENST00000261769	NM_004360.3	278																																																																																
RB1	5925	MSKCC	GRCh37	13	48934208	48934208	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0038213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	38	322	1	ENST00000267163.4:c.663T>A	p.Cys221Ter	p.C221*	ENST00000267163	NM_000321.2	221	tgT/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0038236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	239	769	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0038236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	75	371	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0038236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	80	304	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911548	114911548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	73	533	0	ENST00000543371.1:c.1066G>A	p.Ala356Thr	p.A356T	ENST00000543371	NM_001198531.1	356	Gca/Aca																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031954	10031954	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199528312		P-0038236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	119	752	1	ENST00000330684.3:c.869C>T	p.Ala290Val	p.A290V	ENST00000330684	NM_001134407.1	290	gCg/gTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161846	47161846	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	87	402	0	ENST00000409792.3:c.4280T>G	p.Val1427Gly	p.V1427G	ENST00000409792	NM_014159.6	1427	gTt/gGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112276	115112292	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGTCCGTCTGCACCG	CGCGTCCGTCTGCACCG	-			P-0038237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	73	182	0	ENST00000257566.3:c.1448_1464del	p.Thr483SerfsTer203	p.T483Sfs*203	ENST00000257566	NM_016569.3	483	aCGGTGCAGACGGACGCG/a																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15978934	15978935	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0038237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	229	546	0	ENST00000268712.3:c.3583_3584del	p.Ser1195GlnfsTer3	p.S1195Qfs*3	ENST00000268712	NM_006311.3	1195	AGc/c																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0038241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	29	483	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
RHOA	387	MSKCC	GRCh37	3	49397740	49397740	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	49	657	0	ENST00000418115.1:c.484A>G	p.Lys162Glu	p.K162E	ENST00000418115	NM_001664.2	162	Aag/Gag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732930	30732931	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0038241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	23	412	0	ENST00000359013.4:c.1620_1621del	p.Glu540AspfsTer4	p.E540Dfs*4	ENST00000359013	NM_001024847.2	540	GAg/g																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0038246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	151	490	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0038246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	63	780	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	109	426	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0038246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	106	482	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332739	153332739	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	157	524	0	ENST00000281708.4:c.217C>T	p.Gln73Ter	p.Q73*	ENST00000281708	NM_033632.3	73	Cag/Tag																																																																															
CYLD	1540	MSKCC	GRCh37	16	50785525	50785525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	151	579	0	ENST00000398568.2:c.515G>A	p.Arg172His	p.R172H	ENST00000398568	NM_001042412.1	172	cGt/cAt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120279	70120280	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0038246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	214	749	0	ENST00000245479.2:c.1282_1283dup	p.Ser429ThrfsTer42	p.S429Tfs*42	ENST00000245479	NM_000346.3	427	-/TA																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45371723	45371723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	117	421	0	ENST00000262160.6:c.1268G>A	p.Gly423Glu	p.G423E	ENST00000262160	NM_005901.5	423	gGa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112174685	112174685	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	100	382	0	ENST00000257430.4:c.3394G>T	p.Glu1132Ter	p.E1132*	ENST00000257430	NM_000038.5	1132	Gaa/Taa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056032	26056032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	98	388	0	ENST00000343677.2:c.625G>A	p.Ala209Thr	p.A209T	ENST00000343677	NM_005319.3	209	Gcg/Acg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0030094-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			652	54	701	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030094-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			741	86	826	0	ENST00000269305.4:c.823T>C	p.Cys275Arg	p.C275R	ENST00000269305	NM_001126112.2	275	Tgt/Cgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199364	16199364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030094-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			564	30	495	0	ENST00000375759.3:c.137G>T	p.Gly46Val	p.G46V	ENST00000375759	NM_015001.2	46	gGa/gTa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176104215	176104215	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030094-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			405	47	362	0	ENST00000367669.3:c.899G>C	p.Ser300Thr	p.S300T	ENST00000367669	NM_022457.5	300	aGt/aCt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865641	57865641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030094-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			811	45	940	0	ENST00000228682.2:c.3118C>A	p.Leu1040Ile	p.L1040I	ENST00000228682	NM_005269.2	1040	Ctt/Att																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281393	49281393	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030094-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			786	43	930	1	ENST00000282018.3:c.440T>A	p.Leu147Gln	p.L147Q	ENST00000282018	NM_020377.2	147	cTg/cAg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986589	36986589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030094-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			529	110	459	0	ENST00000354822.5:c.1100C>T	p.Pro367Leu	p.P367L	ENST00000354822	NM_001079668.2	367	cCc/cTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991701	72991701	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030094-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			334	27	442	0	ENST00000268489.5:c.2344G>C	p.Ala782Pro	p.A782P	ENST00000268489	NM_006885.3	782	Gcg/Ccg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40879774	40879774	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030094-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			569	54	537	2	ENST00000428826.2:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000428826		42	tAt/tGt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638641	176638641	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030094-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			825	59	890	0	ENST00000439151.2:c.3244del	p.Ala1082GlnfsTer12	p.A1082Qfs*12	ENST00000439151	NM_022455.4	1081	Ggg/gg																																																																															
SMO	6608	MSKCC	GRCh37	7	128829066	128829066	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs41304185		P-0038129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	18	13	1	ENST00000249373.3:c.74A>G	p.Asp25Gly	p.D25G	ENST00000249373	NM_005631.4	25	gAc/gGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916940	178916948	+	inframe_deletion	In_Frame_Del	DEL	AGAAAAGAT	AGAAAAGAT	-			P-0038129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	1616	478	0	ENST00000263967.3:c.327_335del	p.Glu109_Ile112delinsAsp	p.E109_I112delinsD	ENST00000263967	NM_006218.2	109	gaAGAAAAGATc/gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579702	7579703	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	242	631	0	ENST00000269305.4:c.93_94insA	p.Leu32ThrfsTer11	p.L32Tfs*11	ENST00000269305	NM_001126112.2	31	-/A																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11924315	11924315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	90	150	0	ENST00000353533.5:c.112C>T	p.Gln38Ter	p.Q38*	ENST00000353533	NM_003010.3	38	Cag/Tag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021631	31021631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	364	588	0	ENST00000375687.4:c.1630G>T	p.Asp544Tyr	p.D544Y	ENST00000375687	NM_015338.5	544	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	312	504	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	585	762	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																															
RB1	5925	MSKCC	GRCh37	13	48951053	48951053	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	57	276	0	ENST00000267163.4:c.1216-1G>T		p.X406_splice	ENST00000267163	NM_000321.2	406																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120480538	120480538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	153	600	0	ENST00000256646.2:c.3279G>T	p.Trp1093Cys	p.W1093C	ENST00000256646	NM_024408.3	1093	tgG/tgT																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245873	41245873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	138	644	0	ENST00000357654.3:c.1675G>T	p.Gly559Cys	p.G559C	ENST00000357654	NM_007294.3	559	Ggt/Tgt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81888171	81888171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	213	628	0	ENST00000359376.3:c.316C>T	p.Leu106Phe	p.L106F	ENST00000359376	NM_002661.3	106	Ctc/Ttc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324917	31324917	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	82	639	0	ENST00000412585.2:c.19C>T	p.Arg7Ter	p.R7*	ENST00000412585	NM_005514.6	7	Cga/Tga																																																																															
PARP1	142	MSKCC	GRCh37	1	226549779	226549779	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	105	508	0	ENST00000366794.5:c.2854G>T	p.Gly952Cys	p.G952C	ENST00000366794	NM_001618.3	952	Ggc/Tgc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21639413	21639413	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	110	342	0	ENST00000421138.2:c.501G>T	p.Lys167Asn	p.K167N	ENST00000421138		167	aaG/aaT																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245527	46245527	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	190	485	0	ENST00000334344.6:c.3621G>C	p.Gln1207His	p.Q1207H	ENST00000334344	NM_152641.2	1207	caG/caC																																																																															
FLT1	2321	MSKCC	GRCh37	13	28959024	28959024	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	138	401	2	ENST00000282397.4:c.2114C>T	p.Pro705Leu	p.P705L	ENST00000282397	NM_002019.4	705	cCt/cTt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423568	88423568	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	251	721	0	ENST00000360948.2:c.2267T>A	p.Phe756Tyr	p.F756Y	ENST00000360948	NM_001012338.2	756	tTc/tAc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78923341	78923341	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	212	519	0	ENST00000306801.3:c.3364A>T	p.Thr1122Ser	p.T1122S	ENST00000306801	NM_020761.2	1122	Acg/Tcg																																																																															
YES1	7525	MSKCC	GRCh37	18	739760	739760	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	210	634	0	ENST00000314574.4:c.1112C>A	p.Pro371Gln	p.P371Q	ENST00000314574	NM_005433.3	371	cCa/cAa																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4101142	4101142	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	68	727	0	ENST00000262948.5:c.581-1G>C		p.X194_splice	ENST00000262948	NM_030662.3	194																																																																																
CIC	23152	MSKCC	GRCh37	19	42798089	42798089	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	249	741	0	ENST00000575354.2:c.4043G>C	p.Arg1348Thr	p.R1348T	ENST00000575354	NM_015125.3	1348	aGg/aCg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45860551	45860551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	199	725	0	ENST00000391945.4:c.1456G>T	p.Ala486Ser	p.A486S	ENST00000391945	NM_000400.3	486	Gca/Tca																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659953	227659953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	359	785	0	ENST00000305123.5:c.3502G>A	p.Gly1168Arg	p.G1168R	ENST00000305123	NM_005544.2	1168	Ggg/Agg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663018	227663018	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	314	708	2	ENST00000305123.5:c.437G>T	p.Gly146Val	p.G146V	ENST00000305123	NM_005544.2	146	gGg/gTg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561004	9561004	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	243	511	0	ENST00000353224.5:c.778A>T	p.Ser260Cys	p.S260C	ENST00000353224	NM_177990.2	260	Agc/Tgc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130427	29130427	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	160	649	0	ENST00000328354.6:c.283C>G	p.Arg95Gly	p.R95G	ENST00000328354	NM_007194.3	95	Cga/Gga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390992	89390992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	198	627	0	ENST00000336596.2:c.1058G>T	p.Gly353Val	p.G353V	ENST00000336596	NM_005233.5	353	gGc/gTc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119585459	119585459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	169	440	0	ENST00000316626.5:c.926G>A	p.Gly309Glu	p.G309E	ENST00000316626		309	gGa/gAa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1941462	1941462	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	65	619	0	ENST00000382891.5:c.1838T>C	p.Phe613Ser	p.F613S	ENST00000382891	NM_133335.3	613	tTt/tCt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356349	66356349	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	188	576	0	ENST00000273854.3:c.1148C>G	p.Thr383Ser	p.T383S	ENST00000273854	NM_004439.5	383	aCt/aGt																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84406222	84406222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	88	314	0	ENST00000321945.7:c.4G>A	p.Glu2Lys	p.E2K	ENST00000321945	NM_139076.2	2	Gag/Aag																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143159146	143159146	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	55	371	0	ENST00000262992.4:c.707G>C	p.Cys236Ser	p.C236S	ENST00000262992	NM_001101669.1	236	tGt/tCt																																																																															
NPM1	4869	MSKCC	GRCh37	5	170827906	170827907	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAT			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	121	587	0	ENST00000296930.5:c.652_654dup	p.Ser218dup	p.S218dup	ENST00000296930	NM_002520.6	218	cca/cCATca																																																																															
MDC1	9656	MSKCC	GRCh37	6	30668411	30668411	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	141	555	0	ENST00000376406.3:c.6103-2A>T		p.X2035_splice	ENST00000376406	NM_014641.2	2035																																																																																
PARK2	5071	MSKCC	GRCh37	6	162206824	162206824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	205	582	0	ENST00000366898.1:c.851G>T	p.Gly284Val	p.G284V	ENST00000366898	NM_004562.2	284	gGc/gTc																																																																															
HGF	3082	MSKCC	GRCh37	7	81358929	81358929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	278	552	0	ENST00000222390.5:c.1032C>A	p.Phe344Leu	p.F344L	ENST00000222390	NM_000601.4	344	ttC/ttA																																																																															
HGF	3082	MSKCC	GRCh37	7	81374356	81374356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	160	465	2	ENST00000222390.5:c.706G>T	p.Asp236Tyr	p.D236Y	ENST00000222390	NM_000601.4	236	Gat/Tat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521421	8521421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	57	772	0	ENST00000356435.5:c.817G>A	p.Ala273Thr	p.A273T	ENST00000356435		273	Gca/Aca																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342670	87342670	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	253	711	2	ENST00000277120.3:c.955T>C	p.Tyr319His	p.Y319H	ENST00000277120		319	Tat/Cat																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239956	98239956	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	248	573	0	ENST00000331920.6:c.1376G>T	p.Arg459Leu	p.R459L	ENST00000331920	NM_000264.3	459	cGc/cTc																																																																															
ATRX	546	MSKCC	GRCh37	X	76918903	76918903	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	177	701	0	ENST00000373344.5:c.4088A>T	p.His1363Leu	p.H1363L	ENST00000373344	NM_000489.3	1363	cAt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	174	582	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	79	314	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161949	47161949	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	161	456	0	ENST00000409792.3:c.4177T>G	p.Leu1393Val	p.L1393V	ENST00000409792	NM_014159.6	1393	Tta/Gta																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747945	41747945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	99	196	0	ENST00000226382.2:c.824C>A	p.Pro275His	p.P275H	ENST00000226382	NM_003924.3	275	cCc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70345907	70345907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	150	476	0	ENST00000374080.3:c.2444G>A	p.Arg815Gln	p.R815Q	ENST00000374080		815	cGg/cAg																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281768	49281768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	103	921	0	ENST00000282018.3:c.815C>A	p.Thr272Lys	p.T272K	ENST00000282018	NM_020377.2	272	aCg/aAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578195	7578199	+	frameshift_variant	Frame_Shift_Del	DEL	CACCA	CACCA	-			P-0038151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	175	777	0	ENST00000269305.4:c.650_654del	p.Val217AlafsTer3	p.V217Afs*3	ENST00000269305	NM_001126112.2	217	gTGGTG/g																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16005051	16005051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	165	705	0	ENST00000268712.3:c.2203G>A	p.Glu735Lys	p.E735K	ENST00000268712	NM_006311.3	735	Gag/Aag																																																																															
PMS1	5378	MSKCC	GRCh37	2	190742126	190742126	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	103	454	0	ENST00000441310.2:c.2763T>G	p.Phe921Leu	p.F921L	ENST00000441310	NM_000534.4	921	ttT/ttG																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965644	93965644	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	137	578	0	ENST00000369303.4:c.2284C>G	p.Arg762Gly	p.R762G	ENST00000369303	NM_004440.3	762	Cgc/Ggc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69011960	69011960	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1242	108	735	0	ENST00000288368.4:c.2597A>G	p.Asn866Ser	p.N866S	ENST00000288368	NM_024870.2	866	aAc/aGc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197014	123197014	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	98	454	0	ENST00000218089.9:c.1780T>A	p.Tyr594Asn	p.Y594N	ENST00000218089	NM_001042749.1	594	Tac/Aac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845580	151845580	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1287135873		P-0038157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	82	834	1	ENST00000262189.6:c.13432C>T	p.Arg4478Ter	p.R4478*	ENST00000262189	NM_170606.2	4478	Cga/Tga																																																																															
CDH1	999	MSKCC	GRCh37	16	68844215	68844216	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	133	815	0	ENST00000261769.5:c.807dup	p.Ser270ValfsTer23	p.S270Vfs*23	ENST00000261769	NM_004360.3	268	aag/aaGg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028689	12028689	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0038157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	45	492	0	ENST00000353533.5:c.891+1G>C		p.X297_splice	ENST00000353533	NM_003010.3	297																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	11	603	3	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	136	277	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578441	7578441	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	443	966	0	ENST00000269305.4:c.489C>A	p.Tyr163Ter	p.Y163*	ENST00000269305	NM_001126112.2	163	taC/taA																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724530	162724530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	250	551	0	ENST00000367921.3:c.302G>T	p.Gly101Val	p.G101V	ENST00000367921	NM_006182.2	101	gGg/gTg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28605715	28605715	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	279	715	0	ENST00000253063.3:c.1319A>G	p.Tyr440Cys	p.Y440C	ENST00000253063	NM_031459.4	440	tAc/tGc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166098	118166098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	71	402	0	ENST00000369448.3:c.608C>T	p.Ser203Phe	p.S203F	ENST00000369448	NM_017709.3	203	tCt/tTt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671197	30671197	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0038080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	243	754	0	ENST00000376406.3:c.5680A>T	p.Lys1894Ter	p.K1894*	ENST00000376406	NM_014641.2	1894	Aaa/Taa																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127920606	127920606	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	134	538	0	ENST00000373547.4:c.293C>A	p.Ala98Glu	p.A98E	ENST00000373547	NM_002721.4	98	gCa/gAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	28	494	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832394	72832394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	55	533	0	ENST00000268489.5:c.4187G>A	p.Arg1396His	p.R1396H	ENST00000268489	NM_006885.3	1396	cGc/cAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044955	47044955	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1450	127	1070	0	ENST00000329236.7:c.2047T>C	p.Cys683Arg	p.C683R	ENST00000329236	NM_001204466.1	683	Tgt/Cgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	72	399	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0038090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	139	635	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
ALK	238	MSKCC	GRCh37	2	29473987	29473987	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	99	682	0	ENST00000389048.3:c.2188G>T	p.Ala730Ser	p.A730S	ENST00000389048	NM_004304.4	730	Gcc/Tcc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135782188	135782189	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	82	429	0	ENST00000298552.3:c.1367dup	p.Ser457LysfsTer2	p.S457Kfs*2	ENST00000298552	NM_001162426.1	456	cta/ctTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	57	953	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158617419	158617419	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	33	471	0	ENST00000263640.3:c.1237del	p.Glu413LysfsTer7	p.E413Kfs*7	ENST00000263640	NM_001105.4	413	Gaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112154719	112154719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	89	495	0	ENST00000257430.4:c.990G>A	p.Met330Ile	p.M330I	ENST00000257430	NM_000038.5	330	atG/atA																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0038091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	107	403	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486221	8486221	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	30	428	0	ENST00000356435.5:c.2596G>C	p.Glu866Gln	p.E866Q	ENST00000356435		866	Gag/Cag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0038095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	115	567	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0038095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	90	500	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14038613	14038613	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	31	334	0	ENST00000311895.7:c.1938A>T	p.Arg646Ser	p.R646S	ENST00000311895	NM_005236.2	646	agA/agT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993216	72993216	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	138	717	1	ENST00000268489.5:c.829A>G	p.Lys277Glu	p.K277E	ENST00000268489	NM_006885.3	277	Aag/Gag																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933468	49933468	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	47	708	0	ENST00000296474.3:c.2722G>T	p.Glu908Ter	p.E908*	ENST00000296474	NM_002447.2	908	Gag/Tag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117658464	117658464	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	40	519	1	ENST00000368508.3:c.5119A>G	p.Ser1707Gly	p.S1707G	ENST00000368508	NM_002944.2	1707	Agc/Ggc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521531	8521531	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	40	408	0	ENST00000356435.5:c.707C>G	p.Pro236Arg	p.P236R	ENST00000356435		236	cCa/cGa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913324		P-0038099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	120	721	0	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0038099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	29	401	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11095002	11095002	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	107	878	0	ENST00000344626.4:c.175C>T	p.Gln59Ter	p.Q59*	ENST00000344626	NM_003072.3	59	Cag/Tag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713522	30713522	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	44	530	0	ENST00000359013.4:c.922G>T	p.Glu308Ter	p.E308*	ENST00000359013	NM_001024847.2	308	Gag/Tag																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743580	46743580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	71	685	0	ENST00000371975.4:c.1961G>A	p.Arg654His	p.R654H	ENST00000371975	NM_003579.3	654	cGc/cAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602413	10602413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	76	789	2	ENST00000171111.5:c.1165G>A	p.Asp389Asn	p.D389N	ENST00000171111	NM_203500.1	389	Gac/Aac																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29197685	29197685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	85	706	0	ENST00000240100.2:c.509C>T	p.Pro170Leu	p.P170L	ENST00000240100	NM_001394.6	170	cCg/cTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0038100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	29	331	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984680	11984681	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGAGAACACACAGCAT			P-0038100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	14	279	1	ENST00000353533.5:c.231_246dup	p.Ser83AsnfsTer5	p.S83Nfs*5	ENST00000353533	NM_003010.3	76	ctg/cTGAGAACACACAGCATtg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696452	47696452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	54	476	0	ENST00000347630.2:c.371G>A	p.Arg124Lys	p.R124K	ENST00000347630	NM_001007230.1	124	aGg/aAg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	191	506	9	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	100	325	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	59	246	0	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
BTK	695	MSKCC	GRCh37	X	100624988	100624988	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	63	152	2	ENST00000308731.7:c.389del	p.Asn130ThrfsTer2	p.N130Tfs*2	ENST00000308731	NM_000061.2	130	aAc/ac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088788	27088788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	85	434	1	ENST00000324856.7:c.2402del	p.Gly801ValfsTer32	p.G801Vfs*32	ENST00000324856	NM_006015.4	799	caG/ca																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	51	202	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821596	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs767179754		P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	13	92	1	ENST00000268489.5:c.10579_10581del	p.Gly3527del	p.G3527del	ENST00000268489	NM_006885.3	3527	GGC/-																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	83	300	2	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	37	354	0	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111921737	111921737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	77	221	0	ENST00000393256.3:c.526G>A	p.Glu176Lys	p.E176K	ENST00000393256	NM_006538.4	176	Gaa/Aaa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138461543	138461543	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	100	332	1	ENST00000289153.2:c.478del	p.Ile160SerfsTer13	p.I160Sfs*13	ENST00000289153	NM_006219.2	160	Atc/tc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	47	294	0	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	79	417	6	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	93	323	2	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934243	49934243	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1407832113		P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	61	505	5	ENST00000296474.3:c.2264del	p.Gly755ValfsTer19	p.G755Vfs*19	ENST00000296474	NM_002447.2	755	gGt/gt																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	33	305	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	13	58	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14026116	14026116	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	21	178	0	ENST00000311895.7:c.1081delA	p.Met361TrpfsTer15	p.M361Wfs*15	ENST00000311895	NM_005236.2	359	gAa/ga																																																																															
PIM1	5292	MSKCC	GRCh37	6	37140870	37140870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	44	391	0	ENST00000373509.5:c.706G>A	p.Val236Met	p.V236M	ENST00000373509	NM_002648.3	236	Gtg/Atg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910684	29910684	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	130	835	0	ENST00000376809.5:c.224G>A	p.Trp75Ter	p.W75*	ENST00000376809	NM_002116.7	75	tGg/tAg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	82	598	4	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	216	439	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23539104	23539104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	72	367	0	ENST00000380871.4:c.335C>T	p.Ala112Val	p.A112V	ENST00000380871	NM_006167.3	112	gCc/gTc																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56811497	56811497	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	80	258	0	ENST00000337432.4:c.1045A>G	p.Thr349Ala	p.T349A	ENST00000337432	NM_058216.2	349	Act/Gct																																																																															
MED12	9968	MSKCC	GRCh37	X	70352784	70352784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	124	253	0	ENST00000374080.3:c.4505C>T	p.Ser1502Phe	p.S1502F	ENST00000374080		1502	tCc/tTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	213	507	3	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412647	63412648	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	84	221	0	ENST00000330258.3:c.519dupT	p.Ser174Ter	p.S174*	ENST00000330258	NM_152424.3	173	-/T																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883774	37883774	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	132	627	2	ENST00000269571.5:c.3391delC	p.Leu1131Ter	p.L1131*	ENST00000269571		1129	gCc/gc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324596	31324596	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	69	401	1	ENST00000412585.2:c.212C>A	p.Pro71Gln	p.P71Q	ENST00000412585	NM_005514.6	71	cCg/cAg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1620979	1620979	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1329397192		P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	83	697	1	ENST00000344749.5:c.1081del	p.Gln361ArgfsTer33	p.Q361Rfs*33	ENST00000344749	NM_001136139.2	361	Cag/ag																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31322882	31322882	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	51	419	0	ENST00000412585.2:c.1012+2T>C		p.X338_splice	ENST00000412585	NM_005514.6	338																																																																																
CTCF	10664	MSKCC	GRCh37	16	67654615	67654615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	81	281	0	ENST00000264010.4:c.1102C>T	p.Arg368Cys	p.R368C	ENST00000264010	NM_006565.3	368	Cgt/Tgt																																																																															
TP63	8626	MSKCC	GRCh37	3	189526271	189526271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	86	329	3	ENST00000264731.3:c.535G>A	p.Val179Met	p.V179M	ENST00000264731	NM_003722.4	179	Gtg/Atg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347111	347111	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	148	604	0	ENST00000262320.3:c.1900C>T	p.Gln634Ter	p.Q634*	ENST00000262320	NM_003502.3	634	Cag/Tag																																																																															
KIT	3815	MSKCC	GRCh37	4	55594228	55594228	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	55	259	0	ENST00000288135.5:c.1931T>C	p.Leu644Pro	p.L644P	ENST00000288135	NM_000222.2	644	cTg/cCg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118901	70118901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	139	550	0	ENST00000245479.2:c.473C>T	p.Ala158Val	p.A158V	ENST00000245479	NM_000346.3	158	gCg/gTg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784041	9784041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	106	486	0	ENST00000377346.4:c.2609G>A	p.Arg870Gln	p.R870Q	ENST00000377346	NM_005026.3	870	cGa/cAa																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46736401	46736401	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	84	356	0	ENST00000371975.4:c.1113G>T	p.Glu371Asp	p.E371D	ENST00000371975	NM_003579.3	371	gaG/gaT																																																																															
ELF3	1999	MSKCC	GRCh37	1	201980427	201980427	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	96	462	0	ENST00000359651.3:c.163G>T	p.Glu55Ter	p.E55*	ENST00000359651		55	Gag/Tag																																																																															
PARP1	142	MSKCC	GRCh37	1	226567709	226567709	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	21	415	0	ENST00000366794.5:c.1457A>C	p.Lys486Thr	p.K486T	ENST00000366794	NM_001618.3	486	aAg/aCg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88659802	88659802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	77	296	0	ENST00000372037.3:c.449G>A	p.Ser150Asn	p.S150N	ENST00000372037	NM_004329.2	150	aGc/aAc																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14317322	14317322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	74	257	2	ENST00000256196.4:c.188G>A	p.Arg63Gln	p.R63Q	ENST00000256196		63	cGg/cAg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741603	17741603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	25	338	0	ENST00000250003.3:c.274C>T	p.Arg92Cys	p.R92C	ENST00000250003	NM_002478.4	92	Cgc/Tgc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200258	67200258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	48	497	0	ENST00000312629.5:c.566G>A	p.Gly189Asp	p.G189D	ENST00000312629	NM_003952.2	189	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433980	49433980	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	131	596	0	ENST00000301067.7:c.7573G>T	p.Gly2525Cys	p.G2525C	ENST00000301067	NM_003482.3	2525	Ggt/Tgt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779515	3779515	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	155	721	0	ENST00000262367.5:c.5533A>G	p.Asn1845Asp	p.N1845D	ENST00000262367	NM_004380.2	1845	Aac/Gac																																																																															
NUP93	9688	MSKCC	GRCh37	16	56852610	56852610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	89	343	0	ENST00000308159.5:c.524G>A	p.Arg175Gln	p.R175Q	ENST00000308159	NM_014669.4	175	cGa/cAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829269	72829269	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200921039		P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	55	527	0	ENST00000268489.5:c.7312G>A	p.Ala2438Thr	p.A2438T	ENST00000268489	NM_006885.3	2438	Gca/Aca																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217646	7217647	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	67	310	0	ENST00000380728.2:c.280_281del	p.Leu94ThrfsTer2	p.L94Tfs*2	ENST00000380728		94	TTa/a																																																																															
CDK12	51755	MSKCC	GRCh37	17	37676297	37676297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	119	400	0	ENST00000447079.4:c.3052G>A	p.Asp1018Asn	p.D1018N	ENST00000447079	NM_015083.1	1018	Gac/Aac																																																																															
STAT3	6774	MSKCC	GRCh37	17	40477012	40477012	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	75	414	0	ENST00000264657.5:c.1433T>G	p.Leu478Arg	p.L478R	ENST00000264657	NM_139276.2	478	cTg/cGg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41228547	41228547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	110	413	0	ENST00000357654.3:c.4442C>T	p.Ala1481Val	p.A1481V	ENST00000357654	NM_007294.3	1481	gCa/gTa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246874	41246874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	45	197	0	ENST00000357654.3:c.674C>T	p.Ala225Val	p.A225V	ENST00000357654	NM_007294.3	225	gCt/gTt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211194	2211194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	114	584	0	ENST00000398665.3:c.1448C>T	p.Ala483Val	p.A483V	ENST00000398665	NM_032482.2	483	gCg/gTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291625	15291625	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	113	624	0	ENST00000263388.2:c.3009G>A	p.Trp1003Ter	p.W1003*	ENST00000263388	NM_000435.2	1003	tgG/tgA																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943697	17943697	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	118	535	0	ENST00000458235.1:c.2392C>G	p.Pro798Ala	p.P798A	ENST00000458235	NM_000215.3	798	Cct/Gct																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279544	18279544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	87	442	2	ENST00000222254.8:c.1817C>T	p.Ala606Val	p.A606V	ENST00000222254	NM_005027.3	606	gCa/gTa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905567	50905567	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	125	639	0	ENST00000440232.2:c.695G>T	p.Arg232Leu	p.R232L	ENST00000440232	NM_002691.3	232	cGt/cTt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026161	48026161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	49	251	0	ENST00000234420.5:c.1039G>A	p.Glu347Lys	p.E347K	ENST00000234420	NM_000179.2	347	Gaa/Aaa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99180068	99180068	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	93	445	0	ENST00000074304.5:c.2011C>T	p.Gln671Ter	p.Q671*	ENST00000074304	NM_001134224.1	671	Cag/Tag																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182583	99182583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	45	375	0	ENST00000074304.5:c.2386C>T	p.Pro796Ser	p.P796S	ENST00000074304	NM_001134224.1	796	Ccc/Tcc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790170	40790170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	73	289	0	ENST00000373198.4:c.2561G>A	p.Arg854His	p.R854H	ENST00000373198	NM_133170.3	854	cGc/cAc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713309	30713309	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	63	279	0	ENST00000359013.4:c.709T>C	p.Phe237Leu	p.F237L	ENST00000359013	NM_001024847.2	237	Ttc/Ctc																																																																															
TET2	54790	MSKCC	GRCh37	4	106196325	106196325	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	20	163	0	ENST00000380013.4:c.4658A>G	p.Gln1553Arg	p.Q1553R	ENST00000380013	NM_001127208.2	1553	cAg/cGg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627885	187627885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	130	489	1	ENST00000441802.2:c.3097G>A	p.Val1033Met	p.V1033M	ENST00000441802	NM_005245.3	1033	Gtg/Atg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202370	138202370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	55	477	0	ENST00000237289.4:c.2287C>T	p.Arg763Trp	p.R763W	ENST00000237289	NM_001270507.1	763	Cgg/Tgg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205354	38205356	+	inframe_deletion	In_Frame_Del	DEL	ATA	ATA	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	123	559	0	ENST00000317025.8:c.334_336del	p.Tyr112del	p.Y112del	ENST00000317025	NM_023034.1	112	TAT/-																																																																															
AGO2	27161	MSKCC	GRCh37	8	141551418	141551418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	86	491	1	ENST00000220592.5:c.1879G>A	p.Ala627Thr	p.A627T	ENST00000220592	NM_012154.3	627	Gcc/Acc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741463	145741463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	159	636	1	ENST00000428558.2:c.1040G>A	p.Arg347His	p.R347H	ENST00000428558	NM_004260.3	347	cGc/cAc																																																																															
AR	367	MSKCC	GRCh37	X	66765110	66765111	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	79	252	0	ENST00000374690.3:c.125dup	p.Glu43ArgfsTer41	p.E43Rfs*41	ENST00000374690	NM_000044.3	41	cac/caCc																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0038036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	75	305	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578441	7578441	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	215	916	0	ENST00000269305.4:c.489C>A	p.Tyr163Ter	p.Y163*	ENST00000269305	NM_001126112.2	163	taC/taA																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0038036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	72	581	1	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																															
ATR	545	MSKCC	GRCh37	3	142277482	142277482	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	17	291	0	ENST00000350721.4:c.1869G>C	p.Arg623Ser	p.R623S	ENST00000350721	NM_001184.3	623	agG/agC																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467845	66467845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	15	324	0	ENST00000273854.3:c.424G>A	p.Gly142Arg	p.G142R	ENST00000273854	NM_004439.5	142	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0038038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	161	823	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	33	265	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0038038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	69	294	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0038038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	59	370	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112173995	112173995	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	59	329	0	ENST00000257430.4:c.2704G>T	p.Glu902Ter	p.E902*	ENST00000257430	NM_000038.5	902	Gaa/Taa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374935	45374935	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	167	467	0	ENST00000262160.6:c.908C>G	p.Thr303Arg	p.T303R	ENST00000262160	NM_005901.5	303	aCa/aGa																																																																															
APC	324	MSKCC	GRCh37	5	112102044	112102044	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	28	279	0	ENST00000257430.4:c.158del	p.Gly53GlufsTer17	p.G53Efs*17	ENST00000257430	NM_000038.5	53	Gga/ga																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482804	67482804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	82	654	0	ENST00000327367.4:c.1208C>T	p.Pro403Leu	p.P403L	ENST00000327367	NM_005902.3	403	cCt/cTt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0038043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	20	485	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0038043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	22	702	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0038052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	71	463	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0038052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	86	570	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593417	48593417	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	80	458	0	ENST00000342988.3:c.1168G>T	p.Glu390Ter	p.E390*	ENST00000342988	NM_005359.5	390	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	129	752	0	ENST00000269305.4:c.773A>G	p.Glu258Gly	p.E258G	ENST00000269305	NM_001126112.2	258	gAa/gGa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971053	21971053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	93	614	0	ENST00000304494.5:c.305C>T	p.Ala102Val	p.A102V	ENST00000304494	NM_000077.4	102	gCg/gTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691809	30691809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	42	592	0	ENST00000359013.4:c.386C>T	p.Pro129Leu	p.P129L	ENST00000359013	NM_001024847.2	129	cCc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033735-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			765	119	439	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ATM	472	MSKCC	GRCh37	11	108114773	108114773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033735-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			972	239	581	0	ENST00000278616.4:c.590G>A	p.Gly197Glu	p.G197E	ENST00000278616	NM_000051.3	197	gGa/gAa																																																																															
CDK8	1024	MSKCC	GRCh37	13	26974649	26974649	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033735-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			798	48	641	0	ENST00000381527.3:c.993G>C	p.Gln331His	p.Q331H	ENST00000381527	NM_001260.1	331	caG/caC																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38614539	38614539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033735-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			910	159	671	0	ENST00000299084.4:c.305C>T	p.Thr102Met	p.T102M	ENST00000299084	NM_152594.2	102	aCg/aTg																																																																															
MYD88	4615	MSKCC	GRCh37	3	38180417	38180417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033735-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	72	873	0	ENST00000396334.3:c.265G>A	p.Asp89Asn	p.D89N	ENST00000396334	NM_002468.4	89	Gac/Aac																																																																															
PARK2	5071	MSKCC	GRCh37	6	161781232	161781232	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033735-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			720	48	658	0	ENST00000366898.1:c.1173C>A	p.Tyr391Ter	p.Y391*	ENST00000366898	NM_004562.2	391	taC/taA																																																																															
TEK	7010	MSKCC	GRCh37	9	27197411	27197411	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033735-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	103	746	0	ENST00000380036.4:c.1723T>C	p.Tyr575His	p.Y575H	ENST00000380036	NM_000459.3	575	Tat/Cat																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87636315	87636315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033735-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			802	53	750	1	ENST00000277120.3:c.2480C>T	p.Ala827Val	p.A827V	ENST00000277120		827	gCc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0037003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	1062	311	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0037003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	656	638	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
RB1	5925	MSKCC	GRCh37	13	49027244	49027244	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	226	312	0	ENST00000267163.4:c.1811A>G	p.Asp604Gly	p.D604G	ENST00000267163	NM_000321.2	604	gAt/gGt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291915	15291915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	701	962	3	ENST00000263388.2:c.2851C>T	p.Arg951Cys	p.R951C	ENST00000263388	NM_000435.2	951	Cgt/Tgt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588174	67588174	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	109	329	0	ENST00000274335.5:c.1004G>A	p.Trp335Ter	p.W335*	ENST00000274335		335	tGg/tAg																																																																															
AKT1	207	MSKCC	GRCh37	14	105243048	105243048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	351	838	1	ENST00000349310.3:c.235C>A	p.Gln79Lys	p.Q79K	ENST00000349310	NM_001014432.1	79	Cag/Aag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11217230	11217230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	123	525	0	ENST00000361445.4:c.4448G>A	p.Cys1483Tyr	p.C1483Y	ENST00000361445	NM_004958.3	1483	tGc/tAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445246	49445250	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCT	CCCCT	-			P-0037871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	194	906	0	ENST00000301067.7:c.2216_2220del	p.Glu739AlafsTer8	p.E739Afs*8	ENST00000301067	NM_003482.3	739	gAGGGG/g																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640279	3640279	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	192	945	1	ENST00000294008.3:c.3360A>C	p.Lys1120Asn	p.K1120N	ENST00000294008	NM_032444.2	1120	aaA/aaC																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829212	72829212	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	176	689	0	ENST00000268489.5:c.7369del	p.Gln2457LysfsTer71	p.Q2457Kfs*71	ENST00000268489	NM_006885.3	2457	Caa/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	117	301	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	193	473	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	167	246	0	ENST00000257430.4:c.4364delA	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646335	3646335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	289	721	0	ENST00000294008.3:c.1743G>T	p.Glu581Asp	p.E581D	ENST00000294008	NM_032444.2	581	gaG/gaT																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116189	209116189	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	57	288	0	ENST00000345146.2:c.87A>T	p.Lys29Asn	p.K29N	ENST00000345146	NM_005896.2	29	aaA/aaT																																																																															
APC	324	MSKCC	GRCh37	5	112154842	112154842	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	101	357	0	ENST00000257430.4:c.1115del	p.Asn372IlefsTer82	p.N372Ifs*82	ENST00000257430	NM_000038.5	371	ggA/gg																																																																															
CDH1	999	MSKCC	GRCh37	16	68842703	68842703	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	201	282	1	ENST00000261769.5:c.639G>A	p.Trp213Ter	p.W213*	ENST00000261769	NM_004360.3	213	tgG/tgA																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256313	16256314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGT			P-0037981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	192	337	0	ENST00000375759.3:c.3580_3583dup	p.Pro1195GlnfsTer3	p.P1195Qfs*3	ENST00000375759	NM_015001.2	1193	ggc/ggCAGTc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575361	64575361	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0037981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	242	519	0	ENST00000337652.1:c.669+2T>C		p.X223_splice	ENST00000337652	NM_130803.2	223																																																																																
ERCC2	2068	MSKCC	GRCh37	19	45860532	45860532	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	368	767	0	ENST00000391945.4:c.1475C>G	p.Pro492Arg	p.P492R	ENST00000391945	NM_000400.3	492	cCt/cGt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11292504	11292504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	63	466	0	ENST00000361445.4:c.2503G>T	p.Ala835Ser	p.A835S	ENST00000361445	NM_004958.3	835	Gcc/Tcc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246498766	246498766	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	82	523	1	ENST00000388985.4:c.239G>A	p.Trp80Ter	p.W80*	ENST00000388985		80	tGg/tAg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114197	115114198	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	228	738	1	ENST00000257566.3:c.1019_1020delinsAA	p.Ser340Ter	p.S340*	ENST00000257566	NM_016569.3	340	tCC/tAA																																																																															
POLE	5426	MSKCC	GRCh37	12	133256598	133256598	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	185	577	1	ENST00000320574.5:c.365A>T	p.Lys122Met	p.K122M	ENST00000320574	NM_006231.2	122	aAg/aTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937579	32937579	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	185	619	0	ENST00000380152.3:c.8240T>A	p.Val2747Asp	p.V2747D	ENST00000380152		2747	gTt/gAt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781368	3781368	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	146	957	0	ENST00000262367.5:c.4997C>G	p.Ala1666Gly	p.A1666G	ENST00000262367	NM_004380.2	1666	gCc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578404	+	missense_variant	Missense_Mutation	DNP	CA	CA	AC			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	219	813	0	ENST00000269305.4:c.526_527delinsGT	p.Cys176Val	p.C176V	ENST00000269305	NM_001126112.2	176	TGc/GTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29557319	29557320	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	54	331	0	ENST00000358273.4:c.3037dup	p.Thr1013AsnfsTer8	p.T1013Nfs*8	ENST00000358273	NM_001042492.2	1011	ata/atAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29683525	29683525	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	57	369	0	ENST00000358273.4:c.7663A>T	p.Lys2555Ter	p.K2555*	ENST00000358273	NM_001042492.2	2555	Aaa/Taa																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735634	204735634	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	139	464	0	ENST00000302823.3:c.435C>G	p.Asn145Lys	p.N145K	ENST00000302823	NM_005214.4	145	aaC/aaG																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212483916	212483916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	60	528	0	ENST00000342788.4:c.2287G>A	p.Val763Met	p.V763M	ENST00000342788	NM_005235.2	763	Gtg/Atg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39721121	39721121	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	85	482	0	ENST00000361337.2:c.624A>T	p.Glu208Asp	p.E208D	ENST00000361337	NM_003286.2	208	gaA/gaT																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143033764	143033764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	204	441	0	ENST00000262992.4:c.2207G>T	p.Gly736Val	p.G736V	ENST00000262992	NM_001101669.1	736	gGa/gTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540425	187540425	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	157	478	0	ENST00000441802.2:c.7315G>T	p.Val2439Phe	p.V2439F	ENST00000441802	NM_005245.3	2439	Gtc/Ttc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542306	187542307	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	146	403	0	ENST00000441802.2:c.5433dup	p.Val1812CysfsTer2	p.V1812Cfs*2	ENST00000441802	NM_005245.3	1811	-/T																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120648	94120648	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	89	447	0	ENST00000369303.4:c.403G>C	p.Gly135Arg	p.G135R	ENST00000369303	NM_004440.3	135	Ggc/Cgc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332890	152332890	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	63	454	0	ENST00000206249.3:c.1196C>A	p.Pro399Gln	p.P399Q	ENST00000206249	NM_000125.3	399	cCa/cAa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50358686	50358686	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	97	261	0	ENST00000331340.3:c.31del	p.Gln11LysfsTer10	p.Q11Kfs*10	ENST00000331340	NM_006060.4	10	tCc/tc																																																																															
HGF	3082	MSKCC	GRCh37	7	81350081	81350081	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	130	406	0	ENST00000222390.5:c.1251G>T	p.Lys417Asn	p.K417N	ENST00000222390	NM_000601.4	417	aaG/aaT																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913355		P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	153	392	0	ENST00000288602.6:c.1406G>T	p.Gly469Val	p.G469V	ENST00000288602	NM_004333.4	469	gGa/gTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945134	151945134	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	18	422	0	ENST00000262189.6:c.2385C>A	p.Asp795Glu	p.D795E	ENST00000262189	NM_170606.2	795	gaC/gaA																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507429	8507429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	176	290	0	ENST00000356435.5:c.1549G>T	p.Gly517Trp	p.G517W	ENST00000356435		517	Ggg/Tgg																																																																															
AR	367	MSKCC	GRCh37	X	66765413	66765413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	120	901	0	ENST00000374690.3:c.425G>A	p.Ser142Asn	p.S142N	ENST00000374690	NM_000044.3	142	aGc/aAc																																																																															
AR	367	MSKCC	GRCh37	X	66765802	66765802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	298	1138	0	ENST00000374690.3:c.814C>A	p.Leu272Ile	p.L272I	ENST00000374690	NM_000044.3	272	Ctt/Att																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154432	2154432	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	115	903	1	ENST00000434045.2:c.496del	p.Val166TrpfsTer49	p.V166Wfs*49	ENST00000434045	NM_001127598.1	166	Gtg/tg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	21	197	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	43	262	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028657	12028657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	48	298	0	ENST00000353533.5:c.860G>A	p.Arg287His	p.R287H	ENST00000353533	NM_003010.3	287	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	28	226	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2979448	2979448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	61	445	0	ENST00000396946.4:c.799C>A	p.Leu267Met	p.L267M	ENST00000396946	NM_032415.4	267	Ctg/Atg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845433	156845433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	60	605	0	ENST00000524377.1:c.1476G>T	p.Glu492Asp	p.E492D	ENST00000524377	NM_002529.3	492	gaG/gaT																																																																															
ALK	238	MSKCC	GRCh37	2	29606679	29606679	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs865931787		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	88	396	0	ENST00000389048.3:c.1201C>T	p.Arg401Ter	p.R401*	ENST00000389048	NM_004304.4	401	Cga/Tga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86686647	86686647	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	11	169	0	ENST00000274376.6:c.3091G>T	p.Glu1031Ter	p.E1031*	ENST00000274376	NM_002890.2	1031	Gaa/Taa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123224793	123224793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	13	162	0	ENST00000218089.9:c.3557G>A	p.Arg1186Gln	p.R1186Q	ENST00000218089	NM_001042749.1	1186	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	84	422	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs879255270		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	112	387	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919203	178919203	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	10	166	0	ENST00000263967.3:c.688C>T	p.Arg230Ter	p.R230*	ENST00000263967	NM_006218.2	230	Cga/Tga																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013719	12013719	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	40	168	0	ENST00000353533.5:c.661G>T	p.Glu221Ter	p.E221*	ENST00000353533	NM_003010.3	221	Gaa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240785	55240785	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1417155613		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	136	626	1	ENST00000275493.2:c.2029C>T	p.Arg677Cys	p.R677C	ENST00000275493	NM_005228.3	677	Cgc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108141989	108141989	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	20	232	0	ENST00000278616.4:c.2933C>A	p.Ser978Tyr	p.S978Y	ENST00000278616	NM_000051.3	978	tCt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	39	266	0	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157525044	157525044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	26	195	0	ENST00000346085.5:c.4939C>A	p.Leu1647Ile	p.L1647I	ENST00000346085	NM_020732.3	1647	Ctt/Att																																																																															
APC	324	MSKCC	GRCh37	5	112175457	112175457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	34	243	0	ENST00000257430.4:c.4166C>A	p.Ser1389Tyr	p.S1389Y	ENST00000257430	NM_000038.5	1389	tCt/tAt																																																																															
ATM	472	MSKCC	GRCh37	11	108216568	108216568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	39	193	0	ENST00000278616.4:c.8517C>A	p.Phe2839Leu	p.F2839L	ENST00000278616	NM_000051.3	2839	ttC/ttA																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209264	98209264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	107	500	1	ENST00000331920.6:c.4274C>T	p.Ser1425Leu	p.S1425L	ENST00000331920	NM_000264.3	1425	tCg/tTg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28622457	28622457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	37	333	0	ENST00000241453.7:c.1160G>A	p.Arg387Gln	p.R387Q	ENST00000241453	NM_004119.2	387	cGa/cAa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	41	192	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																															
MSH2	4436	MSKCC	GRCh37	2	47693887	47693887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	23	207	0	ENST00000233146.2:c.1601G>A	p.Arg534His	p.R534H	ENST00000233146	NM_000251.2	534	cGt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584684	187584684	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149295542		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	36	341	1	ENST00000441802.2:c.3349G>A	p.Val1117Met	p.V1117M	ENST00000441802	NM_005245.3	1117	Gtg/Atg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	11	384	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112174119	112174119	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	31	240	0	ENST00000257430.4:c.2828C>A	p.Ser943Ter	p.S943*	ENST00000257430	NM_000038.5	943	tCa/tAa																																																																															
AXL	558	MSKCC	GRCh37	19	41765576	41765576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	29	516	1	ENST00000301178.4:c.2452G>A	p.Glu818Lys	p.E818K	ENST00000301178	NM_021913.4	818	Gaa/Aaa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87482242	87482242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	57	434	0	ENST00000277120.3:c.1529C>T	p.Ser510Leu	p.S510L	ENST00000277120		510	tCg/tTg																																																																															
ATR	545	MSKCC	GRCh37	3	142168429	142168429	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	47	230	0	ENST00000350721.4:c.7777C>A	p.Leu2593Ile	p.L2593I	ENST00000350721	NM_001184.3	2593	Ctt/Att																																																																															
EZH2	2146	MSKCC	GRCh37	7	148513849	148513849	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	18	290	0	ENST00000320356.2:c.1432G>T	p.Glu478Ter	p.E478*	ENST00000320356	NM_004456.4	478	Gaa/Taa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98232137	98232137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	14	301	0	ENST00000331920.6:c.1805G>A	p.Arg602Gln	p.R602Q	ENST00000331920	NM_000264.3	602	cGa/cAa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37667784	37667784	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	35	273	0	ENST00000447079.4:c.2669G>A	p.Arg890His	p.R890H	ENST00000447079	NM_015083.1	890	cGc/cAc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856181	111856181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	47	214	2	ENST00000341259.2:c.232G>A	p.Glu78Lys	p.E78K	ENST00000341259	NM_005475.2	78	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542861	187542861	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1340793072		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	22	217	0	ENST00000441802.2:c.4879C>T	p.Arg1627Ter	p.R1627*	ENST00000441802	NM_005245.3	1627	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604707	48604707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	15	301	0	ENST00000342988.3:c.1529G>A	p.Gly510Glu	p.G510E	ENST00000342988	NM_005359.5	510	gGa/gAa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86649005	86649005	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	14	205	0	ENST00000274376.6:c.1285G>T	p.Glu429Ter	p.E429*	ENST00000274376	NM_002890.2	429	Gaa/Taa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160663	56160663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	52	288	0	ENST00000399503.3:c.937C>T	p.Arg313Trp	p.R313W	ENST00000399503	NM_005921.1	313	Cgg/Tgg																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346284	152346284	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	36	358	0	ENST00000359321.1:c.286C>A	p.Leu96Ile	p.L96I	ENST00000359321	NM_005431.1	96	Ctt/Att																																																																															
RB1	5925	MSKCC	GRCh37	13	49030396	49030396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	26	276	0	ENST00000267163.4:c.1871C>A	p.Ser624Tyr	p.S624Y	ENST00000267163	NM_000321.2	624	tCt/tAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42050032	42050032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	47	232	0	ENST00000219905.7:c.7186C>T	p.Arg2396Ter	p.R2396*	ENST00000219905	NM_001164273.1	2396	Cga/Tga																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99203950	99203950	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755469992		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	20	203	0	ENST00000074304.5:c.2813G>A	p.Arg938Gln	p.R938Q	ENST00000074304	NM_001134224.1	938	cGa/cAa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918695	44918695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	13	142	0	ENST00000377967.4:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000377967	NM_021140.2	393	cGa/cAa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176709529	176709529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	10	204	0	ENST00000439151.2:c.5956C>T	p.Arg1986Cys	p.R1986C	ENST00000439151	NM_022455.4	1986	Cgc/Tgc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135796804	135796804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	70	185	0	ENST00000298552.3:c.683G>A	p.Arg228Gln	p.R228Q	ENST00000298552	NM_001162426.1	228	cGa/cAa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94201000	94201000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	20	257	0	ENST00000323929.3:c.1077G>T	p.Glu359Asp	p.E359D	ENST00000323929	NM_005591.3	359	gaG/gaT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830958	72830958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	58	324	0	ENST00000268489.5:c.5623G>A	p.Glu1875Lys	p.E1875K	ENST00000268489	NM_006885.3	1875	Gaa/Aaa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827900	40827900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	84	358	1	ENST00000373198.4:c.2528C>A	p.Ser843Tyr	p.S843Y	ENST00000373198	NM_133170.3	843	tCt/tAt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027511	48027511	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	40	242	0	ENST00000234420.5:c.2389G>T	p.Asp797Tyr	p.D797Y	ENST00000234420	NM_000179.2	797	Gac/Tac																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164855	47164855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	29	207	0	ENST00000409792.3:c.1271G>A	p.Arg424Gln	p.R424Q	ENST00000409792	NM_014159.6	424	cGa/cAa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026290	48026290	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147737737		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	15	253	0	ENST00000234420.5:c.1168G>A	p.Asp390Asn	p.D390N	ENST00000234420	NM_000179.2	390	Gat/Aat																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030293	180030293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	65	552	0	ENST00000261937.6:c.3991G>T	p.Val1331Leu	p.V1331L	ENST00000261937	NM_182925.4	1331	Gtg/Ttg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710593	117710593	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145765584		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	70	209	0	ENST00000368508.3:c.1679G>A	p.Arg560His	p.R560H	ENST00000368508	NM_002944.2	560	cGc/cAc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645910	67645910	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	49	355	0	ENST00000264010.4:c.838A>C	p.Asn280His	p.N280H	ENST00000264010	NM_006565.3	280	Aat/Cat																																																																															
IRF4	3662	MSKCC	GRCh37	6	394902	394902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	86	363	0	ENST00000380956.4:c.298G>A	p.Ala100Thr	p.A100T	ENST00000380956	NM_001195286.1	100	Gct/Act																																																																															
TOP1	7150	MSKCC	GRCh37	20	39728847	39728847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	61	237	0	ENST00000361337.2:c.1127G>A	p.Arg376Gln	p.R376Q	ENST00000361337	NM_003286.2	376	cGa/cAa																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62319887	62319887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	112	500	0	ENST00000508582.2:c.1801G>A	p.Asp601Asn	p.D601N	ENST00000508582		601	Gac/Aac																																																																															
CIC	23152	MSKCC	GRCh37	19	42794394	42794394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	45	595	0	ENST00000575354.2:c.1474C>T	p.Arg492Trp	p.R492W	ENST00000575354	NM_015125.3	492	Cgg/Tgg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001395	150001395	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	18	384	0	ENST00000253339.5:c.2209C>T	p.Arg737Ter	p.R737*	ENST00000253339		737	Cga/Tga																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56787287	56787287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	54	371	0	ENST00000337432.4:c.773G>A	p.Arg258His	p.R258H	ENST00000337432	NM_058216.2	258	cGt/cAt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58711261	58711261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	19	413	0	ENST00000305921.3:c.749G>A	p.Arg250Gln	p.R250Q	ENST00000305921	NM_003620.3	250	cGa/cAa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729889	41729889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	76	385	0	ENST00000242208.4:c.640C>T	p.Arg214Trp	p.R214W	ENST00000242208	NM_002192.2	214	Cgg/Tgg																																																																															
CASP8	841	MSKCC	GRCh37	2	202131421	202131421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	50	342	0	ENST00000358485.4:c.389G>T	p.Arg130Ile	p.R130I	ENST00000358485	NM_001080125.1	130	aGa/aTa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673482	30673482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	70	377	1	ENST00000376406.3:c.3478C>T	p.Pro1160Ser	p.P1160S	ENST00000376406	NM_014641.2	1160	Cca/Tca																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983784	15983784	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150513105		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	65	354	0	ENST00000268712.3:c.3338G>A	p.Arg1113Gln	p.R1113Q	ENST00000268712	NM_006311.3	1113	cGa/cAa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231239	98231239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	127	489	0	ENST00000331920.6:c.2044C>T	p.Arg682Cys	p.R682C	ENST00000331920	NM_000264.3	682	Cgc/Tgc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807914	3807914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	72	352	0	ENST00000262367.5:c.3505C>T	p.Arg1169Cys	p.R1169C	ENST00000262367	NM_004380.2	1169	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112173365	112173365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	26	223	0	ENST00000257430.4:c.2074C>T	p.Pro692Ser	p.P692S	ENST00000257430	NM_000038.5	692	Cct/Tct																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383654	84383654	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	21	327	0	ENST00000321945.7:c.1198T>G	p.Phe400Val	p.F400V	ENST00000321945	NM_139076.2	400	Ttt/Gtt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276798	15276798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	116	553	0	ENST00000263388.2:c.5467G>A	p.Asp1823Asn	p.D1823N	ENST00000263388	NM_000435.2	1823	Gac/Aac																																																																															
TEK	7010	MSKCC	GRCh37	9	27172623	27172623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	18	340	0	ENST00000380036.4:c.638C>T	p.Ala213Val	p.A213V	ENST00000380036	NM_000459.3	213	gCc/gTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286215	66286215	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	14	244	0	ENST00000273854.3:c.1471G>T	p.Glu491Ter	p.E491*	ENST00000273854	NM_004439.5	491	Gaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108199878	108199878	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	14	128	0	ENST00000278616.4:c.7220C>A	p.Ser2407Ter	p.S2407*	ENST00000278616	NM_000051.3	2407	tCa/tAa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66233141	66233141	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	43	230	1	ENST00000273854.3:c.1858C>T	p.Arg620Trp	p.R620W	ENST00000273854	NM_004439.5	620	Cgg/Tgg																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38614469	38614469	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	35	293	0	ENST00000299084.4:c.235G>T	p.Asp79Tyr	p.D79Y	ENST00000299084	NM_152594.2	79	Gac/Tac																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818213	32818213	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs143800384		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	135	473	0	ENST00000354258.4:c.1312C>T	p.Arg438Ter	p.R438*	ENST00000354258	NM_000593.5	438	Cga/Tga																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546618	9546618	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	66	369	0	ENST00000353224.5:c.1404G>T	p.Glu468Asp	p.E468D	ENST00000353224	NM_177990.2	468	gaG/gaT																																																																															
TET1	80312	MSKCC	GRCh37	10	70411605	70411605	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	33	217	0	ENST00000373644.4:c.4279C>T	p.Arg1427Ter	p.R1427*	ENST00000373644	NM_030625.2	1427	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447841	49447841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	72	487	1	ENST00000301067.7:c.593C>T	p.Ala198Val	p.A198V	ENST00000301067	NM_003482.3	198	gCg/gTg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28631537	28631537	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	37	217	0	ENST00000241453.7:c.431T>G	p.Phe144Cys	p.F144C	ENST00000241453	NM_004119.2	144	tTt/tGt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31472277	31472277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	64	359	0	ENST00000344624.3:c.2134G>A	p.Ala712Thr	p.A712T	ENST00000344624		712	Gcc/Acc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134644715	134644715	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	66	345	0	ENST00000398015.3:c.116C>T	p.Ala39Val	p.A39V	ENST00000398015	NM_004441.4	39	gCg/gTg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814756	139814756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	99	558	0	ENST00000247668.2:c.749C>T	p.Ser250Leu	p.S250L	ENST00000247668	NM_021138.3	250	tCg/tTg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63526195	63526195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	105	420	0	ENST00000307078.5:c.2431G>A	p.Glu811Lys	p.E811K	ENST00000307078	NM_004655.3	811	Gag/Aag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688800	47688800	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	20	230	0	ENST00000347630.2:c.500C>A	p.Ser167Tyr	p.S167Y	ENST00000347630	NM_001007230.1	167	tCt/tAt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243927	41243927	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	17	392	0	ENST00000357654.3:c.3621G>T	p.Lys1207Asn	p.K1207N	ENST00000357654	NM_007294.3	1207	aaG/aaT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444026	49444026	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	40	472	0	ENST00000301067.7:c.3345C>A	p.Phe1115Leu	p.F1115L	ENST00000301067	NM_003482.3	1115	ttC/ttA																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026853	71026853	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	34	189	0	ENST00000318789.4:c.1369G>T	p.Glu457Ter	p.E457*	ENST00000318789	NM_032682.5	457	Gaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108122680	108122680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	30	285	0	ENST00000278616.4:c.1724C>T	p.Ser575Leu	p.S575L	ENST00000278616	NM_000051.3	575	tCa/tTa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192435	138192435	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	39	201	0	ENST00000237289.4:c.71G>T	p.Arg24Ile	p.R24I	ENST00000237289	NM_001270507.1	24	aGa/aTa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435382	18435382	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	25	232	0	ENST00000266497.5:c.367G>T	p.Glu123Ter	p.E123*	ENST00000266497		123	Gaa/Taa																																																																															
ATRX	546	MSKCC	GRCh37	X	76953080	76953080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	45	190	0	ENST00000373344.5:c.233G>A	p.Arg78Gln	p.R78Q	ENST00000373344	NM_000489.3	78	cGa/cAa																																																																															
SDHB	6390	MSKCC	GRCh37	1	17354361	17354361	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	21	172	0	ENST00000375499.3:c.424-1G>T		p.X142_splice	ENST00000375499	NM_003000.2	142																																																																																
RAD54L	8438	MSKCC	GRCh37	1	46739368	46739368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	79	376	0	ENST00000371975.4:c.1559C>T	p.Ser520Leu	p.S520L	ENST00000371975	NM_003579.3	520	tCg/tTg																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166274	118166274	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	51	270	0	ENST00000369448.3:c.784G>T	p.Glu262Ter	p.E262*	ENST00000369448	NM_017709.3	262	Gaa/Taa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120496301	120496301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	20	204	0	ENST00000256646.2:c.2230C>A	p.Leu744Ile	p.L744I	ENST00000256646	NM_024408.3	744	Ctc/Atc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155870306	155870306	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	77	372	0	ENST00000368323.3:c.533T>G	p.Leu178Arg	p.L178R	ENST00000368323	NM_006912.5	178	cTt/cGt																																																																															
FH	2271	MSKCC	GRCh37	1	241667455	241667455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	44	236	0	ENST00000366560.3:c.995C>T	p.Ala332Val	p.A332V	ENST00000366560	NM_000143.3	332	gCc/gTc																																																																															
RET	5979	MSKCC	GRCh37	10	43596047	43596047	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	93	514	0	ENST00000355710.3:c.214C>A	p.Leu72Ile	p.L72I	ENST00000355710	NM_020975.4	72	Ctc/Atc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850697	63850697	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	27	240	0	ENST00000279873.7:c.1475A>C	p.Asp492Ala	p.D492A	ENST00000279873	NM_032199.2	492	gAc/gCc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88635831	88635831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	13	299	0	ENST00000372037.3:c.56C>A	p.Ser19Tyr	p.S19Y	ENST00000372037	NM_004329.2	19	tCt/tAt																																																																															
WT1	7490	MSKCC	GRCh37	11	32449530	32449530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	58	531	0	ENST00000332351.3:c.844G>A	p.Ala282Thr	p.A282T	ENST00000332351	NM_024426.4	282	Gct/Act																																																																															
EED	8726	MSKCC	GRCh37	11	85988112	85988112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	35	240	0	ENST00000263360.6:c.1057C>A	p.Leu353Ile	p.L353I	ENST00000263360	NM_003797.3	353	Ctt/Att																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94194195	94194195	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	35	212	0	ENST00000323929.3:c.1233G>T	p.Glu411Asp	p.E411D	ENST00000323929	NM_005591.3	411	gaG/gaT																																																																															
ATM	472	MSKCC	GRCh37	11	108098563	108098563	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3218684		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	18	181	0	ENST00000278616.4:c.133C>T	p.Arg45Trp	p.R45W	ENST00000278616	NM_000051.3	45	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108163347	108163347	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	22	258	0	ENST00000278616.4:c.4438C>T	p.Pro1480Ser	p.P1480S	ENST00000278616	NM_000051.3	1480	Cct/Tct																																																																															
ATM	472	MSKCC	GRCh37	11	108188130	108188130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	27	187	0	ENST00000278616.4:c.6229C>A	p.Leu2077Ile	p.L2077I	ENST00000278616	NM_000051.3	2077	Ctt/Att																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343697	118343697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	42	300	0	ENST00000534358.1:c.1823G>A	p.Arg608Gln	p.R608Q	ENST00000534358	NM_005933.3	608	cGa/cAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118380757	118380757	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	42	287	0	ENST00000534358.1:c.10995G>T	p.Glu3665Asp	p.E3665D	ENST00000534358	NM_005933.3	3665	gaG/gaT																																																																															
CBL	867	MSKCC	GRCh37	11	119103249	119103249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	45	289	0	ENST00000264033.4:c.287G>A	p.Arg96His	p.R96H	ENST00000264033	NM_005188.3	96	cGt/cAt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	417093	417093	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	16	217	0	ENST00000399788.2:c.3457A>C	p.Thr1153Pro	p.T1153P	ENST00000399788	NM_001042603.1	1153	Aca/Cca																																																																															
KDM5A	5927	MSKCC	GRCh37	12	475224	475224	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	37	382	0	ENST00000399788.2:c.413A>C	p.Lys138Thr	p.K138T	ENST00000399788	NM_001042603.1	138	aAa/aCa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435250	18435250	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	20	253	0	ENST00000266497.5:c.235A>C	p.Asn79His	p.N79H	ENST00000266497		79	Aat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378706	25378706	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	19	171	0	ENST00000256078.4:c.292G>T	p.Glu98Ter	p.E98*	ENST00000256078	NM_033360.2	98	Gaa/Taa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246617	46246617	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	15	139	1	ENST00000334344.6:c.4711G>T	p.Glu1571Ter	p.E1571*	ENST00000334344	NM_152641.2	1571	Gaa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425221	49425221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	53	663	0	ENST00000301067.7:c.13267C>T	p.Pro4423Ser	p.P4423S	ENST00000301067	NM_003482.3	4423	Cca/Tca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443712	49443712	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	66	546	0	ENST00000301067.7:c.3659T>G	p.Phe1220Cys	p.F1220C	ENST00000301067	NM_003482.3	1220	tTt/tGt																																																																															
MSI1	4440	MSKCC	GRCh37	12	120806669	120806669	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	31	186	0	ENST00000257552.2:c.67T>G	p.Phe23Val	p.F23V	ENST00000257552	NM_002442.3	23	Ttc/Gtc																																																																															
POLE	5426	MSKCC	GRCh37	12	133250189	133250189	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	95	410	0	ENST00000320574.5:c.1331T>A	p.Met444Lys	p.M444K	ENST00000320574	NM_006231.2	444	aTg/aAg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28886195	28886195	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	45	338	0	ENST00000282397.4:c.3427G>T	p.Glu1143Ter	p.E1143*	ENST00000282397	NM_002019.4	1143	Gaa/Taa																																																																															
RB1	5925	MSKCC	GRCh37	13	48955551	48955551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	12	246	0	ENST00000267163.4:c.1667G>A	p.Arg556Gln	p.R556Q	ENST00000267163	NM_000321.2	556	cGa/cAa																																																																															
MGA	23269	MSKCC	GRCh37	15	42003117	42003117	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	15	440	1	ENST00000219905.7:c.2654C>A	p.Ser885Tyr	p.S885Y	ENST00000219905	NM_001164273.1	885	tCt/tAt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749187	43749187	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	55	492	0	ENST00000382044.4:c.1619G>T	p.Arg540Ile	p.R540I	ENST00000382044	NM_001141980.1	540	aGa/aTa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420199	88420199	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	77	339	0	ENST00000360948.2:c.2487G>T	p.Lys829Asn	p.K829N	ENST00000360948	NM_001012338.2	829	aaG/aaT																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2636680	2636680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	61	317	1	ENST00000342085.4:c.1129G>T	p.Asp377Tyr	p.D377Y	ENST00000342085	NM_002613.4	377	Gac/Tac																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645270	67645270	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	74	428	0	ENST00000264010.4:c.535G>T	p.Glu179Ter	p.E179*	ENST00000264010	NM_006565.3	179	Gaa/Taa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992719	72992719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	66	514	0	ENST00000268489.5:c.1326G>T	p.Glu442Asp	p.E442D	ENST00000268489	NM_006885.3	442	gaG/gaT																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89337244	89337244	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	129	443	0	ENST00000301030.4:c.7787A>G	p.Asp2596Gly	p.D2596G	ENST00000301030	NM_001256183.1	2596	gAc/gGc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7218340	7218340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	123	407	1	ENST00000380728.2:c.32C>T	p.Ser11Phe	p.S11F	ENST00000380728		11	tCc/tTc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16001809	16001809	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	25	272	0	ENST00000268712.3:c.2692A>C	p.Met898Leu	p.M898L	ENST00000268712	NM_006311.3	898	Atg/Ctg																																																																															
NF1	4763	MSKCC	GRCh37	17	29684049	29684049	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	35	365	0	ENST00000358273.4:c.7810C>A	p.Leu2604Ile	p.L2604I	ENST00000358273	NM_001042492.2	2604	Ctc/Atc																																																																															
NF1	4763	MSKCC	GRCh37	17	29685996	29685996	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	25	187	0	ENST00000358273.4:c.8123T>G	p.Phe2708Cys	p.F2708C	ENST00000358273	NM_001042492.2	2708	tTt/tGt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489867	40489867	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	39	334	0	ENST00000264657.5:c.559G>T	p.Asp187Tyr	p.D187Y	ENST00000264657	NM_139276.2	187	Gat/Tat																																																																															
BRCA1	672	MSKCC	GRCh37	17	41234450	41234450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	28	338	0	ENST00000357654.3:c.4328G>A	p.Arg1443Gln	p.R1443Q	ENST00000357654	NM_007294.3	1443	cGa/cAa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47684678	47684678	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	69	339	0	ENST00000347630.2:c.771C>A	p.Phe257Leu	p.F257L	ENST00000347630	NM_001007230.1	257	ttC/ttA																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58734177	58734177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	39	316	0	ENST00000305921.3:c.1235C>T	p.Ser412Phe	p.S412F	ENST00000305921	NM_003620.3	412	tCc/tTc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117851	70117851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	43	379	0	ENST00000245479.2:c.319C>T	p.Arg107Trp	p.R107W	ENST00000245479	NM_000346.3	107	Cgg/Tgg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374867	45374867	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	33	338	0	ENST00000262160.6:c.976G>T	p.Glu326Ter	p.E326*	ENST00000262160	NM_005901.5	326	Gaa/Taa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45394784	45394784	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	34	197	0	ENST00000262160.6:c.565G>T	p.Glu189Ter	p.E189*	ENST00000262160	NM_005901.5	189	Gaa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573637	48573637	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	17	254	0	ENST00000342988.3:c.221T>C	p.Ile74Thr	p.I74T	ENST00000342988	NM_005359.5	74	aTa/aCa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291617	15291617	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150941674		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	28	560	0	ENST00000263388.2:c.3017G>A	p.Arg1006His	p.R1006H	ENST00000263388	NM_000435.2	1006	cGc/cAc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976479	18976479	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	132	647	0	ENST00000262803.5:c.3129T>G	p.Asp1043Glu	p.D1043E	ENST00000262803	NM_002911.3	1043	gaT/gaG																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19258614	19258614	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138148108		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	94	543	0	ENST00000162023.5:c.286G>A	p.Asp96Asn	p.D96N	ENST00000162023		96	Gat/Aat																																																																															
CIC	23152	MSKCC	GRCh37	19	42798413	42798413	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	114	538	2	ENST00000575354.2:c.4284G>T	p.Lys1428Asn	p.K1428N	ENST00000575354	NM_015125.3	1428	aaG/aaT																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45872210	45872210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	82	515	0	ENST00000391945.4:c.224G>T	p.Arg75Ile	p.R75I	ENST00000391945	NM_000400.3	75	aGa/aTa																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52705261	52705261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	31	317	0	ENST00000322088.6:c.143G>A	p.Arg48Gln	p.R48Q	ENST00000322088	NM_014225.5	48	cGa/cAa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068390	26068390	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	18	229	0	ENST00000435504.4:c.100A>C	p.Ile34Leu	p.I34L	ENST00000435504		34	Att/Ctt																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46588129	46588129	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	28	492	0	ENST00000263734.3:c.679G>T	p.Glu227Ter	p.E227*	ENST00000263734	NM_001430.4	227	Gaa/Taa																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46611713	46611713	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	106	551	0	ENST00000263734.3:c.2527G>T	p.Asp843Tyr	p.D843Y	ENST00000263734	NM_001430.4	843	Gac/Tac																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637284	47637284	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	77	402	0	ENST00000233146.2:c.418G>T	p.Asp140Tyr	p.D140Y	ENST00000233146	NM_000251.2	140	Gat/Tat																																																																															
MSH2	4436	MSKCC	GRCh37	2	47643558	47643558	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	36	312	0	ENST00000233146.2:c.1066A>C	p.Ile356Leu	p.I356L	ENST00000233146	NM_000251.2	356	Ata/Cta																																																																															
MSH2	4436	MSKCC	GRCh37	2	47693878	47693878	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	22	213	0	ENST00000233146.2:c.1592A>C	p.Lys531Thr	p.K531T	ENST00000233146	NM_000251.2	531	aAa/aCa																																																																															
REL	5966	MSKCC	GRCh37	2	61147198	61147198	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	45	228	0	ENST00000295025.8:c.876G>T	p.Lys292Asn	p.K292N	ENST00000295025	NM_002908.2	292	aaG/aaT																																																																															
XPO1	7514	MSKCC	GRCh37	2	61726852	61726852	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	23	208	0	ENST00000401558.2:c.586G>T	p.Asp196Tyr	p.D196Y	ENST00000401558	NM_003400.3	196	Gac/Tac																																																																															
ACVR1	90	MSKCC	GRCh37	2	158637027	158637027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	71	358	1	ENST00000263640.3:c.153G>T	p.Gln51His	p.Q51H	ENST00000263640	NM_001105.4	51	caG/caT																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198270150	198270150	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1421809024		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	72	288	0	ENST00000335508.6:c.1286G>A	p.Arg429Gln	p.R429Q	ENST00000335508	NM_012433.2	429	cGa/cAa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212495224	212495224	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	10	278	0	ENST00000342788.4:c.2042A>C	p.Lys681Thr	p.K681T	ENST00000342788	NM_005235.2	681	aAa/aCa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730788	40730788	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	75	427	0	ENST00000373198.4:c.3747T>G	p.Asn1249Lys	p.N1249K	ENST00000373198	NM_133170.3	1249	aaT/aaG																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980728	40980728	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	45	316	0	ENST00000373198.4:c.1758T>G	p.Ile586Met	p.I586M	ENST00000373198	NM_133170.3	586	atT/atG																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206833	36206833	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	88	335	0	ENST00000300305.3:c.679G>T	p.Glu227Ter	p.E227*	ENST00000300305		227	Gaa/Taa																																																																															
NF2	4771	MSKCC	GRCh37	22	30032808	30032808	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	96	303	0	ENST00000338641.4:c.183C>A	p.Phe61Leu	p.F61L	ENST00000338641	NM_000268.3	61	ttC/ttA																																																																															
EP300	2033	MSKCC	GRCh37	22	41513615	41513615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	32	480	0	ENST00000263253.7:c.519G>T	p.Met173Ile	p.M173I	ENST00000263253	NM_001429.3	173	atG/atT																																																																															
EP300	2033	MSKCC	GRCh37	22	41574278	41574278	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	77	506	0	ENST00000263253.7:c.6563T>C	p.Met2188Thr	p.M2188T	ENST00000263253	NM_001429.3	2188	aTg/aCg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12627220	12627220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	59	319	0	ENST00000251849.4:c.1496C>A	p.Ser499Tyr	p.S499Y	ENST00000251849	NM_002880.3	499	tCt/tAt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37090071	37090071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	24	346	0	ENST00000231790.2:c.1960C>T	p.Pro654Ser	p.P654S	ENST00000231790	NM_000249.3	654	Cct/Tct																																																																															
SETD2	29072	MSKCC	GRCh37	3	47108598	47108598	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	22	208	0	ENST00000409792.3:c.6071G>T	p.Arg2024Leu	p.R2024L	ENST00000409792	NM_014159.6	2024	cGa/cTa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161991	47161991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	29	261	0	ENST00000409792.3:c.4135G>T	p.Asp1379Tyr	p.D1379Y	ENST00000409792	NM_014159.6	1379	Gac/Tac																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162333	47162333	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	12	263	0	ENST00000409792.3:c.3793G>T	p.Glu1265Ter	p.E1265*	ENST00000409792	NM_014159.6	1265	Gaa/Taa																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72873590	72873590	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	23	259	0	ENST00000325599.8:c.712A>C	p.Asn238His	p.N238H	ENST00000325599	NM_018130.2	238	Aat/Cat																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89156963	89156963	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	95	381	0	ENST00000336596.2:c.65T>G	p.Leu22Arg	p.L22R	ENST00000336596	NM_005233.5	22	cTg/cGg																																																																															
ATR	545	MSKCC	GRCh37	3	142274944	142274944	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	35	272	0	ENST00000350721.4:c.2116G>T	p.Glu706Ter	p.E706*	ENST00000350721	NM_001184.3	706	Gaa/Taa																																																																															
ATR	545	MSKCC	GRCh37	3	142281302	142281302	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	62	342	0	ENST00000350721.4:c.942A>C	p.Glu314Asp	p.E314D	ENST00000350721	NM_001184.3	314	gaA/gaC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952012	178952012	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	33	254	0	ENST00000263967.3:c.3067C>T	p.Arg1023Ter	p.R1023*	ENST00000263967	NM_006218.2	1023	Cga/Tga																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182665348	182665348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	22	151	0	ENST00000292782.4:c.593A>C	p.Lys198Thr	p.K198T	ENST00000292782	NM_020640.2	198	aAa/aCa																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182681676	182681676	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	36	246	0	ENST00000292782.4:c.382G>T	p.Glu128Ter	p.E128*	ENST00000292782	NM_020640.2	128	Gaa/Taa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155354	185155354	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	53	340	0	ENST00000265026.3:c.595G>T	p.Glu199Ter	p.E199*	ENST00000265026	NM_004721.4	199	Gaa/Taa																																																																															
BCL6	604	MSKCC	GRCh37	3	187442741	187442741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	38	252	0	ENST00000232014.4:c.1965G>T	p.Glu655Asp	p.E655D	ENST00000232014	NM_001130845.1	655	gaG/gaT																																																																															
TP63	8626	MSKCC	GRCh37	3	189607164	189607164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	28	498	0	ENST00000264731.3:c.1543G>T	p.Asp515Tyr	p.D515Y	ENST00000264731	NM_003722.4	515	Gac/Tac																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1978263	1978263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	93	567	0	ENST00000382895.3:c.3683G>A	p.Arg1228His	p.R1228H	ENST00000382895	NM_133330.2	1228	cGc/cAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133455	55133455	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	39	291	0	ENST00000257290.5:c.760-1G>A		p.X254_splice	ENST00000257290	NM_006206.4	254																																																																																
PDGFRA	5156	MSKCC	GRCh37	4	55156540	55156540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	55	383	0	ENST00000257290.5:c.2941C>T	p.Arg981Cys	p.R981C	ENST00000257290	NM_006206.4	981	Cgt/Tgt																																																																															
KIT	3815	MSKCC	GRCh37	4	55565835	55565835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	44	388	0	ENST00000288135.5:c.659G>T	p.Ser220Ile	p.S220I	ENST00000288135	NM_000222.2	220	aGc/aTc																																																																															
KDR	3791	MSKCC	GRCh37	4	55972933	55972933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	10	286	0	ENST00000263923.4:c.1457G>T	p.Arg486Ile	p.R486I	ENST00000263923	NM_002253.2	486	aGa/aTa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467748	66467748	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	21	224	0	ENST00000273854.3:c.521T>G	p.Ile174Ser	p.I174S	ENST00000273854	NM_004439.5	174	aTt/aGt																																																																															
TET2	54790	MSKCC	GRCh37	4	106156426	106156426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	19	270	0	ENST00000380013.4:c.1327A>G	p.Thr443Ala	p.T443A	ENST00000380013	NM_001127208.2	443	Aca/Gca																																																																															
TET2	54790	MSKCC	GRCh37	4	106183003	106183003	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	10	147	0	ENST00000380013.4:c.4042C>A	p.Gln1348Lys	p.Q1348K	ENST00000380013	NM_001127208.2	1348	Cag/Aag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250828	153250828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	30	262	0	ENST00000281708.4:c.1232G>A	p.Gly411Asp	p.G411D	ENST00000281708	NM_033632.3	411	gGc/gAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517885	187517885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	34	299	0	ENST00000441802.2:c.12809G>A	p.Arg4270Gln	p.R4270Q	ENST00000441802	NM_005245.3	4270	cGa/cAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187525683	187525683	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	17	292	0	ENST00000441802.2:c.10396G>T	p.Asp3466Tyr	p.D3466Y	ENST00000441802	NM_005245.3	3466	Gat/Tat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534451	187534451	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	40	270	0	ENST00000441802.2:c.9275T>C	p.Val3092Ala	p.V3092A	ENST00000441802	NM_005245.3	3092	gTt/gCt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542918	187542918	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	22	137	0	ENST00000441802.2:c.4822A>C	p.Asn1608His	p.N1608H	ENST00000441802	NM_005245.3	1608	Aat/Cat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628899	187628899	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	83	403	0	ENST00000441802.2:c.2083A>T	p.Asn695Tyr	p.N695Y	ENST00000441802	NM_005245.3	695	Aac/Tac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629270	187629270	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	80	417	0	ENST00000441802.2:c.1712A>C	p.Lys571Thr	p.K571T	ENST00000441802	NM_005245.3	571	aAa/aCa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86633900	86633900	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	13	207	0	ENST00000274376.6:c.1009G>T	p.Glu337Ter	p.E337*	ENST00000274376	NM_002890.2	337	Gaa/Taa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645079	86645079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	48	212	1	ENST00000274376.6:c.1151G>A	p.Gly384Asp	p.G384D	ENST00000274376	NM_002890.2	384	gGc/gAc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672056	30672056	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	39	497	0	ENST00000376406.3:c.4904C>A	p.Ser1635Tyr	p.S1635Y	ENST00000376406	NM_014641.2	1635	tCt/tAt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190436	32190436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	74	622	2	ENST00000375023.3:c.303C>A	p.Phe101Leu	p.F101L	ENST00000375023	NM_004557.3	101	ttC/ttA																																																																															
TAP1	6890	MSKCC	GRCh37	6	32820952	32820952	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	137	652	0	ENST00000354258.4:c.642G>A	p.Trp214Ter	p.W214*	ENST00000354258	NM_000593.5	214	tgG/tgA																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967945	93967945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	20	302	1	ENST00000369303.4:c.1982C>T	p.Ala661Val	p.A661V	ENST00000369303	NM_004440.3	661	gCa/gTa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982028	93982028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	42	229	0	ENST00000369303.4:c.1437G>T	p.Lys479Asn	p.K479N	ENST00000369303	NM_004440.3	479	aaG/aaT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120442	94120442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	26	240	0	ENST00000369303.4:c.609G>T	p.Lys203Asn	p.K203N	ENST00000369303	NM_004440.3	203	aaG/aaT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117663635	117663635	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	45	281	0	ENST00000368508.3:c.4597A>C	p.Lys1533Gln	p.K1533Q	ENST00000368508	NM_002944.2	1533	Aaa/Caa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117725561	117725561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	46	287	0	ENST00000368508.3:c.320C>T	p.Ala107Val	p.A107V	ENST00000368508	NM_002944.2	107	gCt/gTt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419939	152419939	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	100	403	0	ENST00000206249.3:c.1626G>T	p.Glu542Asp	p.E542D	ENST00000206249	NM_000125.3	542	gaG/gaT																																																																															
ETV1	2115	MSKCC	GRCh37	7	13978836	13978836	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	57	296	0	ENST00000405192.2:c.271G>T	p.Glu91Ter	p.E91*	ENST00000405192	NM_001163147.1	91	Gaa/Taa																																																																															
HGF	3082	MSKCC	GRCh37	7	81335663	81335663	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	24	341	0	ENST00000222390.5:c.1697A>G	p.Asn566Ser	p.N566S	ENST00000222390	NM_000601.4	566	aAt/aGt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508803	106508803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	41	434	0	ENST00000359195.3:c.797G>T	p.Ser266Ile	p.S266I	ENST00000359195	NM_002649.2	266	aGc/aTc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148512039	148512039	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	28	253	0	ENST00000320356.2:c.1639T>G	p.Phe547Val	p.F547V	ENST00000320356	NM_004456.4	547	Ttt/Gtt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873742	151873742	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	54	365	0	ENST00000262189.6:c.8796T>G	p.Ile2932Met	p.I2932M	ENST00000262189	NM_170606.2	2932	atT/atG																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38272107	38272107	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	101	417	0	ENST00000425967.3:c.2111T>G	p.Phe704Cys	p.F704C	ENST00000425967	NM_001174067.1	704	tTt/tGt																																																																															
LYN	4067	MSKCC	GRCh37	8	56864548	56864548	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	55	356	0	ENST00000519728.1:c.511G>T	p.Asp171Tyr	p.D171Y	ENST00000519728	NM_002350.3	171	Gac/Tac																																																																															
TCEB1	6921	MSKCC	GRCh37	8	74858960	74858960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	40	291	1	ENST00000284811.8:c.244C>T	p.Arg82Cys	p.R82C	ENST00000284811		82	Cgc/Tgc																																																																															
TEK	7010	MSKCC	GRCh37	9	27158053	27158053	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	72	465	1	ENST00000380036.4:c.277G>T	p.Ala93Ser	p.A93S	ENST00000380036	NM_000459.3	93	Gct/Tct																																																																															
TEK	7010	MSKCC	GRCh37	9	27202881	27202881	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	44	331	0	ENST00000380036.4:c.1973C>A	p.Ser658Tyr	p.S658Y	ENST00000380036	NM_000459.3	658	tCt/tAt																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1331500	1331500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	100	383	0	ENST00000381566.1:c.28G>A	p.Ala10Thr	p.A10T	ENST00000381566		10	Gct/Act																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933989	39933989	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	53	266	0	ENST00000378444.4:c.610T>G	p.Tyr204Asp	p.Y204D	ENST00000378444	NM_001123385.1	204	Tac/Gac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44945125	44945125	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	35	138	0	ENST00000377967.4:c.3449A>G	p.Asn1150Ser	p.N1150S	ENST00000377967	NM_021140.2	1150	aAc/aGc																																																																															
MGA	23269	MSKCC	GRCh37	15	41989087	41989087	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	120	360	0	ENST00000219905.7:c.1879C>T	p.Arg627Ter	p.R627*	ENST00000219905	NM_001164273.1	627	Cga/Tga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686961	37686961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	118	314	0	ENST00000447079.4:c.3865G>A	p.Ala1289Thr	p.A1289T	ENST00000447079	NM_015083.1	1289	Gcc/Acc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374882	45374882	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs776149698		P-0037900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	86	335	0	ENST00000262160.6:c.961C>T	p.Arg321Ter	p.R321*	ENST00000262160	NM_005901.5	321	Cga/Tga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52584526	52584526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	135	380	0	ENST00000394830.3:c.4487G>A	p.Arg1496Gln	p.R1496Q	ENST00000394830	NM_018313.4	1496	cGg/cAg																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724421	112724421	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0037900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	99	395	0	ENST00000369452.4:c.305C>G	p.Ser102Ter	p.S102*	ENST00000369452	NM_007373.3	102	tCa/tGa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572604	64572604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	160	489	1	ENST00000337652.1:c.1267G>A	p.Asp423Asn	p.D423N	ENST00000337652	NM_130803.2	423	Gac/Aac																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36989289	36989289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	49	379	0	ENST00000354822.5:c.46G>A	p.Ala16Thr	p.A16T	ENST00000354822	NM_001079668.2	16	Gcg/Acg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238990	5238990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	141	351	0	ENST00000357368.4:c.1789C>T	p.Arg597Cys	p.R597C	ENST00000357368	NM_002850.3	597	Cgc/Tgc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528079	157528079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	83	410	0	ENST00000346085.5:c.5804C>T	p.Ala1935Val	p.A1935V	ENST00000346085	NM_020732.3	1935	gCg/gTg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871873	12871873	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	128	161	0	ENST00000228872.4:c.592del	p.Thr198ArgfsTer27	p.T198Rfs*27	ENST00000228872	NM_004064.3	197	cAa/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	582	600	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62319369	62319369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1154	276	937	1	ENST00000508582.2:c.1633G>A	p.Asp545Asn	p.D545N	ENST00000508582		545	Gat/Aat																																																																															
MED12	9968	MSKCC	GRCh37	X	70344973	70344973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	77	623	1	ENST00000374080.3:c.2203G>A	p.Ala735Thr	p.A735T	ENST00000374080		735	Gcc/Acc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65332884	65332884	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	84	191	0	ENST00000342505.4:c.655C>T	p.Arg219Ter	p.R219*	ENST00000342505	NM_002227.2	219	Cga/Tga																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980726	70980726	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	141	596	0	ENST00000276594.2:c.742C>T	p.Gln248Ter	p.Q248*	ENST00000276594	NM_024504.3	248	Caa/Taa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2110704	2110704	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	269	821	0	ENST00000219476.3:c.1009G>C	p.Glu337Gln	p.E337Q	ENST00000219476	NM_000548.3	337	Gag/Cag																																																																															
IL7R	3575	MSKCC	GRCh37	5	35861085	35861085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	71	283	0	ENST00000303115.3:c.214G>A	p.Glu72Lys	p.E72K	ENST00000303115	NM_002185.3	72	Gaa/Aaa																																																																															
RET	5979	MSKCC	GRCh37	10	43622086	43622086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	103	412	0	ENST00000355710.3:c.3103G>A	p.Glu1035Lys	p.E1035K	ENST00000355710	NM_020975.4	1035	Gag/Aag																																																																															
JUN	3725	MSKCC	GRCh37	1	59248117	59248117	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	65	201	0	ENST00000371222.2:c.626A>C	p.His209Pro	p.H209P	ENST00000371222	NM_002228.3	209	cAc/cCc																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145018	58145018	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	395	564	0	ENST00000257904.6:c.326del	p.Pro109HisfsTer12	p.P109Hfs*12	ENST00000257904	NM_000075.3	109	cCa/ca																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30132919	30132919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	282	513	0	ENST00000331968.5:c.682G>T	p.Asp228Tyr	p.D228Y	ENST00000331968	NM_002742.2	228	Gat/Tat																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858291	9858291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	113	432	0	ENST00000330684.3:c.3110C>T	p.Ala1037Val	p.A1037V	ENST00000330684	NM_001134407.1	1037	gCa/gTa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600446	10600446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	652	829	1	ENST00000171111.5:c.1409G>T	p.Arg470Leu	p.R470L	ENST00000171111	NM_203500.1	470	cGt/cTt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138461527	138461528	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	129	455	0	ENST00000289153.2:c.493_494delinsTT	p.Gly165Leu	p.G165L	ENST00000289153	NM_006219.2	165	GGa/TTa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467410	66467410	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	61	237	0	ENST00000273854.3:c.859G>T	p.Gly287Trp	p.G287W	ENST00000273854	NM_004439.5	287	Ggg/Tgg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86681162	86681162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	79	255	0	ENST00000274376.6:c.2803A>T	p.Lys935Ter	p.K935*	ENST00000274376	NM_002890.2	935	Aaa/Taa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521544	8521544	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	115	450	1	ENST00000356435.5:c.694C>A	p.Arg232Ser	p.R232S	ENST00000356435		232	Cgc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0037964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	338	451	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120787	115120787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	184	631	0	ENST00000257566.3:c.219G>T	p.Glu73Asp	p.E73D	ENST00000257566	NM_016569.3	73	gaG/gaT																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262126	10262126	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	213	786	0	ENST00000340748.4:c.2165A>G	p.Lys722Arg	p.K722R	ENST00000340748		722	aAg/aGg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52623236	52623236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	152	416	0	ENST00000394830.3:c.2815G>A	p.Gly939Ser	p.G939S	ENST00000394830	NM_018313.4	939	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112174031	112174032	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0037964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	326	480	0	ENST00000257430.4:c.2744_2745del	p.Val915AspfsTer3	p.V915Dfs*3	ENST00000257430	NM_000038.5	914	TGt/t																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0037964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	141	452	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0037966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	152	714	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	117	375	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591114	67591124	+	protein_altering_variant	In_Frame_Del	DEL	CCTTATCCAGC	CCTTATCCAGC	TA			P-0037966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	45	437	1	ENST00000274335.5:c.1707_1717delinsTA	p.Leu570_Leu573delinsMet	p.L570_L573delinsM	ENST00000274335		569	gaCCTTATCCAGCtg/gaTAtg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117683812	117683812	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	104	578	2	ENST00000368508.3:c.3335C>A	p.Ser1112Tyr	p.S1112Y	ENST00000368508	NM_002944.2	1112	tCt/tAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	18	441	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0037971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	28	543	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0037971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	173	398	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0037971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	200	434	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302801	15302801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	263	759	0	ENST00000263388.2:c.649G>A	p.Asp217Asn	p.D217N	ENST00000263388	NM_000435.2	217	Gac/Aac																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514277	69514277	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	243	731	0	ENST00000294312.3:c.404G>T	p.Arg135Leu	p.R135L	ENST00000294312	NM_005117.2	135	cGa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579318	7579325	+	frameshift_variant	Frame_Shift_Del	DEL	AGTCACAG	AGTCACAG	-			P-0037971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	268	596	0	ENST00000269305.4:c.362_369del	p.Ser121LeufsTer25	p.S121Lfs*25	ENST00000269305	NM_001126112.2	121	tCTGTGACT/t																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534428	63534429	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	204	634	0	ENST00000307078.5:c.1092dup	p.Val365ArgfsTer9	p.V365Rfs*9	ENST00000307078	NM_004655.3	364	-/C																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0037975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	354	797	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982416	201982417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	129	739	0	ENST00000359651.3:c.796dup	p.Ser266LysfsTer35	p.S266Kfs*35	ENST00000359651		265	-/A																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560248	95560248	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	95	444	1	ENST00000343455.3:c.5341G>T	p.Glu1781Ter	p.E1781*	ENST00000343455	NM_177438.2	1781	Gaa/Taa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324684	31324684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	121	549	0	ENST00000412585.2:c.124G>A	p.Gly42Arg	p.G42R	ENST00000412585	NM_005514.6	42	Ggg/Agg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197803	123197803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	67	281	1	ENST00000218089.9:c.1927G>A	p.Glu643Lys	p.E643K	ENST00000218089	NM_001042749.1	643	Gag/Aag																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0038012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	255	451	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443499	49443499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	106	441	1	ENST00000301067.7:c.3872G>A	p.Arg1291Gln	p.R1291Q	ENST00000301067	NM_003482.3	1291	cGg/cAg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647122	23647123	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	98	674	0	ENST00000261584.4:c.744dup	p.Pro249SerfsTer8	p.P249Sfs*8	ENST00000261584	NM_024675.3	248	-/T																																																																															
EP300	2033	MSKCC	GRCh37	22	41513242	41513242	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	79	403	0	ENST00000263253.7:c.146A>G	p.Asn49Ser	p.N49S	ENST00000263253	NM_001429.3	49	aAc/aGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0037803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	83	426	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0037803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	48	309	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285816	46285816	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	53	474	0	ENST00000334344.6:c.5086del	p.Leu1696TyrfsTer5	p.L1696Yfs*5	ENST00000334344	NM_152641.2	1695	gCc/gc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3831203	3831225	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ACTTTGTGGCCCCCAGGGAAGTC	ACTTTGTGGCCCCCAGGGAAGTC	-			P-0037803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	46	301	0	ENST00000262367.5:c.1656_1676+2del		p.X552_splice	ENST00000262367	NM_004380.2	552																																																																																
TP53	7157	MSKCC	GRCh37	17	7579335	7579336	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	54	681	0	ENST00000269305.4:c.351_352insC	p.Thr118HisfsTer31	p.T118Hfs*31	ENST00000269305	NM_001126112.2	117	-/C																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62325749	62325749	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	55	723	0	ENST00000508582.2:c.3089T>C	p.Leu1030Pro	p.L1030P	ENST00000508582		1030	cTg/cCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	174	583	2	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	131	396	0	ENST00000263967.3:c.333G>T	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaT																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479811	67479811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	158	557	0	ENST00000327367.4:c.1118G>A	p.Arg373His	p.R373H	ENST00000327367	NM_005902.3	373	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	126	424	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273297	55273297	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	141	416	0	ENST00000275493.2:c.3620T>G	p.Phe1207Cys	p.F1207C	ENST00000275493	NM_005228.3	1207	tTt/tGt																																																																															
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	186	537	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457303	67457303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	169	617	2	ENST00000327367.4:c.277C>T	p.Arg93Ter	p.R93*	ENST00000327367	NM_005902.3	93	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	168	568	2	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																															
B2M	567	MSKCC	GRCh37	15	45007681	45007681	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	35	467	0	ENST00000558401.1:c.128T>G	p.Leu43Arg	p.L43R	ENST00000558401	NM_004048.2	43	cTg/cGg																																																																															
NF1	4763	MSKCC	GRCh37	17	29663722	29663722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	224	581	1	ENST00000358273.4:c.6217C>T	p.Leu2073Phe	p.L2073F	ENST00000358273	NM_001042492.2	2073	Ctt/Ttt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374245	138374245	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	170	578	0	ENST00000289153.2:c.3199G>T	p.Asp1067Tyr	p.D1067Y	ENST00000289153	NM_006219.2	1067	Gac/Tac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857127	9857127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	116	384	1	ENST00000330684.3:c.4274C>T	p.Ser1425Leu	p.S1425L	ENST00000330684	NM_001134407.1	1425	tCg/tTg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	243	591	0	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	172	468	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149495372	149495372	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146614144		P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	123	567	1	ENST00000261799.4:c.3275C>T	p.Ser1092Leu	p.S1092L	ENST00000261799	NM_002609.3	1092	tCg/tTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101170	41101170	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41279256		P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	32	650	0	ENST00000373198.4:c.1186G>A	p.Val396Ile	p.V396I	ENST00000373198	NM_133170.3	396	Gta/Ata																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011200	12011200	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	142	434	0	ENST00000353533.5:c.607G>T	p.Glu203Ter	p.E203*	ENST00000353533	NM_003010.3	203	Gaa/Taa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591076	67591076	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	108	293	0	ENST00000274335.5:c.1669C>T	p.Arg557Ter	p.R557*	ENST00000274335		557	Cga/Tga																																																																															
EZH2	2146	MSKCC	GRCh37	7	148525883	148525883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	306	541	2	ENST00000320356.2:c.574G>A	p.Asp192Asn	p.D192N	ENST00000320356	NM_004456.4	192	Gat/Aat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832265	72832265	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	154	534	1	ENST00000268489.5:c.4316G>A	p.Arg1439Gln	p.R1439Q	ENST00000268489	NM_006885.3	1439	cGa/cAa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001395	150001395	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	211	666	2	ENST00000253339.5:c.2209C>T	p.Arg737Ter	p.R737*	ENST00000253339		737	Cga/Tga																																																																															
B2M	567	MSKCC	GRCh37	15	45007752	45007753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	165	483	0	ENST00000558401.1:c.204dup	p.Val69SerfsTer21	p.V69Sfs*21	ENST00000558401	NM_004048.2	67	gaa/gAaa																																																																															
CASP8	841	MSKCC	GRCh37	2	202131421	202131421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	141	507	2	ENST00000358485.4:c.389G>T	p.Arg130Ile	p.R130I	ENST00000358485	NM_001080125.1	130	aGa/aTa																																																																															
B2M	567	MSKCC	GRCh37	15	45003779	45003779	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	32	528	0	ENST00000558401.1:c.35T>G	p.Leu12Arg	p.L12R	ENST00000558401	NM_004048.2	12	cTa/cGa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251901	153251901	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	43	561	0	ENST00000281708.4:c.1105G>T	p.Glu369Ter	p.E369*	ENST00000281708	NM_033632.3	369	Gaa/Taa																																																																															
B2M	567	MSKCC	GRCh37	15	45007672	45007672	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	161	463	0	ENST00000558401.1:c.119C>A	p.Ser40Ter	p.S40*	ENST00000558401	NM_004048.2	40	tCa/tAa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911435	134911435	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	151	531	1	ENST00000398015.3:c.1900T>C	p.Tyr634His	p.Y634H	ENST00000398015	NM_004441.4	634	Tac/Cac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433373	49433373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	190	654	0	ENST00000301067.7:c.8074C>T	p.Arg2692Trp	p.R2692W	ENST00000301067	NM_003482.3	2692	Cgg/Tgg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027887	48027887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	30	350	0	ENST00000234420.5:c.2765G>A	p.Arg922Gln	p.R922Q	ENST00000234420	NM_000179.2	922	cGa/cAa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808966	1808966	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	96	492	0	ENST00000260795.2:c.2398A>G	p.Ser800Gly	p.S800G	ENST00000260795		800	Agc/Ggc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419841	41419841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	87	399	3	ENST00000373198.4:c.480C>A	p.Phe160Leu	p.F160L	ENST00000373198	NM_133170.3	160	ttC/ttA																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395710	45395710	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	186	478	1	ENST00000262160.6:c.424G>T	p.Glu142Ter	p.E142*	ENST00000262160	NM_005901.5	142	Gaa/Taa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412196	63412196	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	228	424	0	ENST00000330258.3:c.971C>A	p.Ser324Ter	p.S324*	ENST00000330258	NM_152424.3	324	tCa/tAa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59926518	59926518	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	273	726	0	ENST00000259008.2:c.479G>T	p.Arg160Ile	p.R160I	ENST00000259008	NM_032043.2	160	aGa/aTa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998919	11998919	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	112	346	1	ENST00000353533.5:c.421G>T	p.Glu141Ter	p.E141*	ENST00000353533	NM_003010.3	141	Gaa/Taa																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073637	8073637	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	205	510	0	ENST00000377482.5:c.1022A>G	p.Tyr341Cys	p.Y341C	ENST00000377482	NM_018948.3	341	tAc/tGc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11210264	11210264	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	34	556	0	ENST00000361445.4:c.4489T>C	p.Cys1497Arg	p.C1497R	ENST00000361445	NM_004958.3	1497	Tgc/Cgc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46527623	46527623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	231	539	0	ENST00000262741.5:c.742G>A	p.Gly248Arg	p.G248R	ENST00000262741	NM_003629.3	248	Ggg/Agg																																																																															
JUN	3725	MSKCC	GRCh37	1	59248740	59248740	+	start_lost	Translation_Start_Site	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	39	703	0	ENST00000371222.2:c.3G>T	p.Met1?	p.M1?	ENST00000371222	NM_002228.3	1	atG/atT																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176054937	176054937	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	136	497	0	ENST00000367669.3:c.1116T>G	p.Phe372Leu	p.F372L	ENST00000367669	NM_022457.5	372	ttT/ttG																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692997	89692997	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	109	374	0	ENST00000371953.3:c.481A>G	p.Arg161Gly	p.R161G	ENST00000371953	NM_000314.4	161	Aga/Gga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711999	89711999	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	137	288	0	ENST00000371953.3:c.617T>C	p.Phe206Ser	p.F206S	ENST00000371953	NM_000314.4	206	tTc/tCc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104356918	104356918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	193	572	0	ENST00000369902.3:c.778G>A	p.Glu260Lys	p.E260K	ENST00000369902	NM_016169.3	260	Gag/Aag																																																																															
LMO1	4004	MSKCC	GRCh37	11	8246247	8246247	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	123	425	0	ENST00000335790.3:c.387C>A	p.Phe129Leu	p.F129L	ENST00000335790	NM_002315.2	129	ttC/ttA																																																																															
WT1	7490	MSKCC	GRCh37	11	32439136	32439136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	153	678	0	ENST00000332351.3:c.937G>A	p.Ala313Thr	p.A313T	ENST00000332351	NM_024426.4	313	Gcc/Acc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944790	71944790	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	37	618	1	ENST00000298229.2:c.2212+2T>C		p.X738_splice	ENST00000298229	NM_001567.3	738																																																																																
EED	8726	MSKCC	GRCh37	11	85977174	85977174	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	126	466	2	ENST00000263360.6:c.776C>A	p.Ser259Tyr	p.S259Y	ENST00000263360	NM_003797.3	259	tCt/tAt																																																																															
SESN3	143686	MSKCC	GRCh37	11	94918552	94918552	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	38	590	0	ENST00000536441.1:c.630T>G	p.Ser210Arg	p.S210R	ENST00000536441	NM_144665.3	210	agT/agG																																																																															
PGR	5241	MSKCC	GRCh37	11	100933474	100933474	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	88	316	1	ENST00000325455.5:c.1916T>G	p.Phe639Cys	p.F639C	ENST00000325455	NM_001202474.3	639	tTt/tGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118850	115118850	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	184	486	0	ENST00000257566.3:c.491A>C	p.Lys164Thr	p.K164T	ENST00000257566	NM_016569.3	164	aAa/aCa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28588621	28588621	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	173	478	2	ENST00000241453.7:c.2827T>G	p.Leu943Val	p.L943V	ENST00000241453	NM_004119.2	943	Tta/Gta																																																																															
FLT3	2322	MSKCC	GRCh37	13	28644627	28644627	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	206	568	0	ENST00000241453.7:c.165+1G>A		p.X55_splice	ENST00000241453	NM_004119.2	55																																																																																
FLT1	2321	MSKCC	GRCh37	13	29041120	29041120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	282	761	1	ENST00000282397.4:c.308G>A	p.Gly103Asp	p.G103D	ENST00000282397	NM_002019.4	103	gGc/gAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910767	32910767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	143	403	0	ENST00000380152.3:c.2275C>A	p.Leu759Ile	p.L759I	ENST00000380152		759	Ctt/Att																																																																															
RB1	5925	MSKCC	GRCh37	13	48919228	48919228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	72	201	1	ENST00000267163.4:c.393C>A	p.Phe131Leu	p.F131L	ENST00000267163	NM_000321.2	131	ttC/ttA																																																																															
RB1	5925	MSKCC	GRCh37	13	49039490	49039490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	186	541	0	ENST00000267163.4:c.2475G>T	p.Met825Ile	p.M825I	ENST00000267163	NM_000321.2	825	atG/atT																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281262	49281262	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	53	864	0	ENST00000282018.3:c.309T>G	p.Asn103Lys	p.N103K	ENST00000282018	NM_020377.2	103	aaT/aaG																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346835	73346835	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	22	241	0	ENST00000377767.4:c.1382A>C	p.Glu461Ala	p.E461A	ENST00000377767	NM_014953.3	461	gAa/gCa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30093363	30093363	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	201	584	0	ENST00000331968.5:c.1900C>A	p.Leu634Ile	p.L634I	ENST00000331968	NM_002742.2	634	Cta/Ata																																																																															
MGA	23269	MSKCC	GRCh37	15	42003288	42003288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	219	701	0	ENST00000219905.7:c.2825C>A	p.Ser942Tyr	p.S942Y	ENST00000219905	NM_001164273.1	942	tCt/tAt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43707910	43707910	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	226	743	0	ENST00000382044.4:c.4971G>T	p.Lys1657Asn	p.K1657N	ENST00000382044	NM_001141980.1	1657	aaG/aaT																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43738647	43738647	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	241	604	0	ENST00000382044.4:c.2978G>T	p.Arg993Ile	p.R993I	ENST00000382044	NM_001141980.1	993	aGa/aTa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482863	67482863	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	156	458	0	ENST00000327367.4:c.1267A>C	p.Ser423Arg	p.S423R	ENST00000327367	NM_005902.3	423	Agt/Cgt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3841993	3841993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	180	444	1	ENST00000262367.5:c.1319G>A	p.Arg440Gln	p.R440Q	ENST00000262367	NM_004380.2	440	cGa/cAa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81904512	81904512	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	103	390	0	ENST00000359376.3:c.620A>C	p.Lys207Thr	p.K207T	ENST00000359376	NM_002661.3	207	aAa/aCa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350695	89350695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	69	943	1	ENST00000301030.4:c.2255C>T	p.Ser752Phe	p.S752F	ENST00000301030	NM_001256183.1	752	tCt/tTt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89813065	89813065	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	143	541	0	ENST00000389301.3:c.3440A>C	p.Asp1147Ala	p.D1147A	ENST00000389301	NM_000135.2	1147	gAc/gCc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89818606	89818606	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	174	463	0	ENST00000389301.3:c.3006A>C	p.Glu1002Asp	p.E1002D	ENST00000389301	NM_000135.2	1002	gaA/gaC																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15971372	15971372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	194	643	0	ENST00000268712.3:c.4577G>T	p.Arg1526Met	p.R1526M	ENST00000268712	NM_006311.3	1526	aGg/aTg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30322615	30322615	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	38	542	0	ENST00000322652.5:c.1628T>G	p.Phe543Cys	p.F543C	ENST00000322652	NM_015355.2	543	tTt/tGt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618830	37618830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	182	453	1	ENST00000447079.4:c.506G>A	p.Ser169Asn	p.S169N	ENST00000447079	NM_015083.1	169	aGc/aAc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243902	41243902	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	203	641	0	ENST00000357654.3:c.3646T>G	p.Leu1216Val	p.L1216V	ENST00000357654	NM_007294.3	1216	Tta/Gta																																																																															
BRCA1	672	MSKCC	GRCh37	17	41256254	41256254	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	170	435	0	ENST00000357654.3:c.326A>G	p.Lys109Arg	p.K109R	ENST00000357654	NM_007294.3	109	aAa/aGa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59858223	59858223	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	205	495	0	ENST00000259008.2:c.1772T>C	p.Phe591Ser	p.F591S	ENST00000259008	NM_032043.2	591	tTt/tCt																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626891	14626891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	46	630	0	ENST00000254322.2:c.884G>A	p.Arg295Gln	p.R295Q	ENST00000254322	NM_006145.1	295	cGa/cAa																																																																															
ALK	238	MSKCC	GRCh37	2	29754974	29754974	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	31	463	0	ENST00000389048.3:c.961C>A	p.Leu321Ile	p.L321I	ENST00000389048	NM_004304.4	321	Ctc/Atc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39250088	39250088	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	260	712	0	ENST00000402219.2:c.1481T>G	p.Phe494Cys	p.F494C	ENST00000402219	NM_005633.3	494	tTt/tGt																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728733	190728733	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	105	326	1	ENST00000441310.2:c.2121A>C	p.Lys707Asn	p.K707N	ENST00000441310	NM_000534.4	707	aaA/aaC																																																																															
CASP8	841	MSKCC	GRCh37	2	202149929	202149929	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	41	636	0	ENST00000358485.4:c.1370A>C	p.Asp457Ala	p.D457A	ENST00000358485	NM_001080125.1	457	gAc/gCc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225422537	225422537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	126	411	0	ENST00000264414.4:c.103G>A	p.Asp35Asn	p.D35N	ENST00000264414	NM_003590.4	35	Gac/Aac																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538308	9538308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	237	619	1	ENST00000353224.5:c.1690G>A	p.Val564Met	p.V564M	ENST00000353224	NM_177990.2	564	Gtg/Atg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538359	9538359	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	166	540	0	ENST00000353224.5:c.1639A>G	p.Thr547Ala	p.T547A	ENST00000353224	NM_177990.2	547	Act/Gct																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31385039	31385039	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	41	598	1	ENST00000328111.2:c.1424A>C	p.Gln475Pro	p.Q475P	ENST00000328111	NM_006892.3	475	cAg/cCg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980849	40980849	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	161	552	0	ENST00000373198.4:c.1637G>T	p.Arg546Leu	p.R546L	ENST00000373198	NM_133170.3	546	cGg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101174	41101174	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	124	637	0	ENST00000373198.4:c.1182A>C	p.Glu394Asp	p.E394D	ENST00000373198	NM_133170.3	394	gaA/gaC																																																																															
EP300	2033	MSKCC	GRCh37	22	41574576	41574576	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	221	739	2	ENST00000263253.7:c.6861T>G	p.Asn2287Lys	p.N2287K	ENST00000263253	NM_001429.3	2287	aaT/aaG																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164310	47164310	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	161	424	0	ENST00000409792.3:c.1816A>C	p.Asn606His	p.N606H	ENST00000409792	NM_014159.6	606	Aat/Cat																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610660	52610660	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	35	545	1	ENST00000394830.3:c.3513C>A	p.Phe1171Leu	p.F1171L	ENST00000394830	NM_018313.4	1171	ttC/ttA																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89176383	89176383	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	110	379	0	ENST00000336596.2:c.113T>C	p.Ile38Thr	p.I38T	ENST00000336596	NM_005233.5	38	aTt/aCt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541967	187541967	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	226	582	0	ENST00000441802.2:c.5773G>C	p.Glu1925Gln	p.E1925Q	ENST00000441802	NM_005245.3	1925	Gag/Cag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630731	187630731	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	50	692	0	ENST00000441802.2:c.251A>G	p.Lys84Arg	p.K84R	ENST00000441802	NM_005245.3	84	aAa/aGa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526439	31526439	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	54	860	0	ENST00000344624.3:c.601A>C	p.Ser201Arg	p.S201R	ENST00000344624		201	Agt/Cgt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38959416	38959416	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	20	365	0	ENST00000357387.3:c.2059A>C	p.Asn687His	p.N687H	ENST00000357387	NM_152756.3	687	Aat/Cat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178044	56178044	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	32	403	0	ENST00000399503.3:c.3017T>G	p.Leu1006Arg	p.L1006R	ENST00000399503	NM_005921.1	1006	cTt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112154938	112154938	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	209	609	0	ENST00000257430.4:c.1209A>C	p.Glu403Asp	p.E403D	ENST00000257430	NM_000038.5	403	gaA/gaC																																																																															
APC	324	MSKCC	GRCh37	5	112176017	112176017	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	115	340	1	ENST00000257430.4:c.4726G>T	p.Glu1576Ter	p.E1576*	ENST00000257430	NM_000038.5	1576	Gaa/Taa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120633	94120633	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	124	524	0	ENST00000369303.4:c.418G>T	p.Glu140Ter	p.E140*	ENST00000369303	NM_004440.3	140	Gaa/Taa																																																																															
SESN1	27244	MSKCC	GRCh37	6	109319879	109319879	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	178	642	0	ENST00000436639.2:c.809C>A	p.Ser270Tyr	p.S270Y	ENST00000436639	NM_014454.2	270	tCt/tAt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609778	117609778	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	190	613	0	ENST00000368508.3:c.6921G>T	p.Lys2307Asn	p.K2307N	ENST00000368508	NM_002944.2	2307	aaG/aaT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117642492	117642492	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	187	695	0	ENST00000368508.3:c.5707G>T	p.Asp1903Tyr	p.D1903Y	ENST00000368508	NM_002944.2	1903	Gac/Tac																																																																															
ROS1	6098	MSKCC	GRCh37	6	117663633	117663633	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	225	579	1	ENST00000368508.3:c.4599A>C	p.Lys1533Asn	p.K1533N	ENST00000368508	NM_002944.2	1533	aaA/aaC																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508373	106508373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	17	352	0	ENST00000359195.3:c.367C>T	p.Arg123Cys	p.R123C	ENST00000359195	NM_002649.2	123	Cgc/Tgc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148515072	148515072	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	368	569	0	ENST00000320356.2:c.1137A>C	p.Glu379Asp	p.E379D	ENST00000320356	NM_004456.4	379	gaA/gaC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860075	151860075	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	228	447	0	ENST00000262189.6:c.10587T>G	p.Phe3529Leu	p.F3529L	ENST00000262189	NM_170606.2	3529	ttT/ttG																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020361	69020361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	30	495	2	ENST00000288368.4:c.2733G>T	p.Lys911Asn	p.K911N	ENST00000288368	NM_024870.2	911	aaG/aaT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69028080	69028080	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	167	604	0	ENST00000288368.4:c.3239G>T	p.Arg1080Ile	p.R1080I	ENST00000288368	NM_024870.2	1080	aGa/aTa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70970968	70970968	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	103	723	0	ENST00000276594.2:c.1293A>C	p.Lys431Asn	p.K431N	ENST00000276594	NM_024504.3	431	aaA/aaC																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70971015	70971015	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	271	720	0	ENST00000276594.2:c.1246G>T	p.Asp416Tyr	p.D416Y	ENST00000276594	NM_024504.3	416	Gat/Tat																																																																															
AGO2	27161	MSKCC	GRCh37	8	141559216	141559216	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	26	544	0	ENST00000220592.5:c.1585T>C	p.Tyr529His	p.Y529H	ENST00000220592	NM_012154.3	529	Tac/Cac																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249847	110249847	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	35	652	0	ENST00000374672.4:c.828G>T	p.Lys276Asn	p.K276N	ENST00000374672	NM_004235.4	276	aaG/aaT																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127912136	127912136	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	81	412	0	ENST00000373547.4:c.734A>C	p.Lys245Thr	p.K245T	ENST00000373547	NM_002721.4	245	aAa/aCa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	133	620	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857336	9857336	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	41	555	0	ENST00000330684.3:c.4065G>T	p.Lys1355Asn	p.K1355N	ENST00000330684	NM_001134407.1	1355	aaG/aaT																																																																															
TSC1	7248	MSKCC	GRCh37	9	135776195	135776195	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	68	478	0	ENST00000298552.3:c.2532G>C	p.Gln844His	p.Q844H	ENST00000298552	NM_001162426.1	844	caG/caC																																																																															
TSC1	7248	MSKCC	GRCh37	9	135776201	135776201	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	65	463	0	ENST00000298552.3:c.2526G>C	p.Gln842His	p.Q842H	ENST00000298552	NM_001162426.1	842	caG/caC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0037818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	47	386	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	212	906	0	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt																																																																															
CBFB	865	MSKCC	GRCh37	16	67070631	67070631	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0037818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	139	235	0	ENST00000412916.2:c.255T>A	p.Tyr85Ter	p.Y85*	ENST00000412916		85	taT/taA																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58734016	58734016	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	140	554	0	ENST00000305921.3:c.1074G>C	p.Trp358Cys	p.W358C	ENST00000305921	NM_003620.3	358	tgG/tgC																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58734074	58734074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	127	718	0	ENST00000305921.3:c.1132G>A	p.Glu378Lys	p.E378K	ENST00000305921	NM_003620.3	378	Gaa/Aaa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58734107	58734107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	115	758	0	ENST00000305921.3:c.1165G>A	p.Asp389Asn	p.D389N	ENST00000305921	NM_003620.3	389	Gat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	1956	320	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MGA	23269	MSKCC	GRCh37	15	41988352	41988353	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0038013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	126	385	0	ENST00000219905.7:c.1145_1146del	p.Lys382ArgfsTer6	p.K382Rfs*6	ENST00000219905	NM_001164273.1	382	AAa/a																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671216	30671216	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	118	573	0	ENST00000376406.3:c.5661C>G	p.Asn1887Lys	p.N1887K	ENST00000376406	NM_014641.2	1887	aaC/aaG																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552921	106552921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	172	618	0	ENST00000369096.4:c.886C>T	p.Arg296Trp	p.R296W	ENST00000369096	NM_001198.3	296	Cgg/Tgg																																																																															
TEK	7010	MSKCC	GRCh37	9	27169513	27169513	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	196	417	0	ENST00000380036.4:c.514G>C	p.Asp172His	p.D172H	ENST00000380036	NM_000459.3	172	Gat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	9	701	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	27	732	0	ENST00000269305.4:c.824G>C	p.Cys275Ser	p.C275S	ENST00000269305	NM_001126112.2	275	tGt/tCt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591878	48591883	+	inframe_deletion	In_Frame_Del	DEL	TGTTAC	TGTTAC	-			P-0023743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	17	618	1	ENST00000342988.3:c.1045_1050del	p.Thr349_Val350del	p.T349_V350del	ENST00000342988	NM_005359.5	347	atTGTTACt/att																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519997		P-0034299-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			196	57	875	0	ENST00000269305.4:c.332T>C	p.Leu111Pro	p.L111P	ENST00000269305	NM_001126112.2	111	cTg/cCg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878959	151878959	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0034299-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			48	32	641	2	ENST00000262189.6:c.5986A>T	p.Lys1996Ter	p.K1996*	ENST00000262189	NM_170606.2	1996	Aaa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444797	49444797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034299-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			191	32	1052	0	ENST00000301067.7:c.2669C>T	p.Ser890Phe	p.S890F	ENST00000301067	NM_003482.3	890	tCc/tTc																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22221661	22221661	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034299-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			182	11	172	0	ENST00000215832.6:c.70C>A	p.Arg24Ser	p.R24S	ENST00000215832	NM_002745.4	24	Cgc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0035518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	353	448	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115712	8115712	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	62	253	0	ENST00000346208.3:c.1058C>A	p.Pro353His	p.P353H	ENST00000346208		353	cCc/cAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953965	32953965	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	51	342	1	ENST00000380152.3:c.9032T>G	p.Leu3011Arg	p.L3011R	ENST00000380152		3011	cTt/cGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603622	48604644	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTAAAATTGAACTGTGTGCCAGGTTTCACACTGATGGGGAATTTTTTACTGCAGAGTTAAACTCCTGACTATAGACTTTTATGATGGAAACACGTGGCACCCATCTTCCACGTCTGAAGGCATAACTAGTGATTCATTCAACCCCTGTTCTTAACCTCTTCAGTGTGGTAAGCAAATCACACTGGCTAAGAAAACTGCAGTGGCCCTGCAGGTTTCTCTACAGTACATGCAAATTCCTCCCATTAGTTTCATTGTAATATTGATGAATGCAGATGGACTATATGACTGTATGTTCTGACTGGAAAATTAGATGCAGTCTCCATTGTGACTTATGTTCAGGAGTTTACAATTTAGAGGTAGATTAGGCATATTCATTGAGAGAATTTGATTTTTTAAAATTTGGGGTGATACCATTAATTTGCTGGTTTCAGTGTTATAAACATGCTTTTACTGAAGAATCCAGAACTATTATTAAGTTTCATATTCTCATCAGTTGCCACCACTGAGTAATAGTGTATTACTCTGTTACACTTTGAAATTGAGAGAGAGACTTCATCTCGGTCATCTAAGAGGTCTTAGTGGAACTAAGAATATTAACTGCTTCATTATTAGTTATGTCTTATTCTGAACTAGGCTGTTTAGACAGTAAGGTTTTTAGAAGCAACCTGTGGACACGCACTACCTCTTAAAAACAAGTTGTTTCTTATCCCTTCACCTCCACTTCTAAAGAAAAAAATAGGTGAGGTGTTGGTGGATTGTGGTAATTTACTTTATAATTGGTTGTAGCTAGAAGACACATGTGAAATGTAAAGTTCCTTAACCAAAAGTGTGCAGCTTGTTGATAAAGTTTAGATCTACTGTTACTTCTTGGCACTTTAGCAGAGAAGTTATATGCTGAGGAGAATGAAATACAGAAAGCTGGTCACTTGATTAATTTAGAATGTAGGGAGGATGGGAAGAGATCACCCTGTCCCTCTGATGTCTTCCAAATCTTTTCTGTTAGGTCTGTCAGCTGCTGCTGG	GGTAAAATTGAACTGTGTGCCAGGTTTCACACTGATGGGGAATTTTTTACTGCAGAGTTAAACTCCTGACTATAGACTTTTATGATGGAAACACGTGGCACCCATCTTCCACGTCTGAAGGCATAACTAGTGATTCATTCAACCCCTGTTCTTAACCTCTTCAGTGTGGTAAGCAAATCACACTGGCTAAGAAAACTGCAGTGGCCCTGCAGGTTTCTCTACAGTACATGCAAATTCCTCCCATTAGTTTCATTGTAATATTGATGAATGCAGATGGACTATATGACTGTATGTTCTGACTGGAAAATTAGATGCAGTCTCCATTGTGACTTATGTTCAGGAGTTTACAATTTAGAGGTAGATTAGGCATATTCATTGAGAGAATTTGATTTTTTAAAATTTGGGGTGATACCATTAATTTGCTGGTTTCAGTGTTATAAACATGCTTTTACTGAAGAATCCAGAACTATTATTAAGTTTCATATTCTCATCAGTTGCCACCACTGAGTAATAGTGTATTACTCTGTTACACTTTGAAATTGAGAGAGAGACTTCATCTCGGTCATCTAAGAGGTCTTAGTGGAACTAAGAATATTAACTGCTTCATTATTAGTTATGTCTTATTCTGAACTAGGCTGTTTAGACAGTAAGGTTTTTAGAAGCAACCTGTGGACACGCACTACCTCTTAAAAACAAGTTGTTTCTTATCCCTTCACCTCCACTTCTAAAGAAAAAAATAGGTGAGGTGTTGGTGGATTGTGGTAATTTACTTTATAATTGGTTGTAGCTAGAAGACACATGTGAAATGTAAAGTTCCTTAACCAAAAGTGTGCAGCTTGTTGATAAAGTTTAGATCTACTGTTACTTCTTGGCACTTTAGCAGAGAAGTTATATGCTGAGGAGAATGAAATACAGAAAGCTGGTCACTTGATTAATTTAGAATGTAGGGAGGATGGGAAGAGATCACCCTGTCCCTCTGATGTCTTCCAAATCTTTTCTGTTAGGTCTGTCAGCTGCTGCTGG	-			P-0035518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2	81	0	0	ENST00000342988.3:c.1447+476_1466del		p.X483_splice	ENST00000342988	NM_005359.5	483																																																																																
WWTR1	25937	MSKCC	GRCh37	3	149260186	149260186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	272	496	1	ENST00000360632.3:c.707G>A	p.Arg236Gln	p.R236Q	ENST00000360632	NM_015472.4	236	cGg/cAg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821404	32821404	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	268	595	0	ENST00000354258.4:c.190T>G	p.Ser64Ala	p.S64A	ENST00000354258	NM_000593.5	64	Tct/Gct																																																																															
BCOR	54880	MSKCC	GRCh37	X	39935769	39935769	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	194	508	0	ENST00000378444.4:c.103G>C	p.Asp35His	p.D35H	ENST00000378444	NM_001123385.1	35	Gat/Cat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045946	47045946	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	252	567	0	ENST00000329236.7:c.2507A>C	p.Tyr836Ser	p.Y836S	ENST00000329236	NM_001204466.1	836	tAc/tCc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45871940	45871940	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142462393		P-0037742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	157	626	0	ENST00000391945.4:c.308C>T	p.Pro103Leu	p.P103L	ENST00000391945	NM_000400.3	103	cCg/cTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916205	9916205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	125	481	1	ENST00000330684.3:c.2084G>A	p.Arg695Gln	p.R695Q	ENST00000330684	NM_001134407.1	695	cGg/cAg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103528215	103528215	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	84	335	0	ENST00000355739.4:c.3523A>C	p.Lys1175Gln	p.K1175Q	ENST00000355739	NM_000123.3	1175	Aaa/Caa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52443861	52443861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	161	610	0	ENST00000460680.1:c.34C>T	p.Pro12Ser	p.P12S	ENST00000460680	NM_004656.3	12	Cca/Tca																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0037747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	36	609	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115708	8115708	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	26	429	0	ENST00000346208.3:c.1054A>G	p.Arg352Gly	p.R352G	ENST00000346208		352	Aga/Gga																																																																															
CDH1	999	MSKCC	GRCh37	16	68857466	68857466	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	244	647	1	ENST00000261769.5:c.2101del	p.Val701SerfsTer21	p.V701Sfs*21	ENST00000261769	NM_004360.3	701	Gtc/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	238	313	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044853	47044853	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	110	795	0	ENST00000329236.7:c.1945G>T	p.Gly649Ter	p.G649*	ENST00000329236	NM_001204466.1	649	Gga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108203511	108203511	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	39	211	0	ENST00000278616.4:c.7811G>C	p.Arg2604Thr	p.R2604T	ENST00000278616	NM_000051.3	2604	aGa/aCa																																																																															
POLE	5426	MSKCC	GRCh37	12	133263856	133263856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	34	172	0	ENST00000320574.5:c.46G>A	p.Asp16Asn	p.D16N	ENST00000320574	NM_006231.2	16	Gat/Aat																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599926	28599926	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	113	647	1	ENST00000253063.3:c.808G>T	p.Glu270Ter	p.E270*	ENST00000253063	NM_031459.4	270	Gag/Tag																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123263359	123263359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	91	446	0	ENST00000358487.5:c.1384G>T	p.Gly462Trp	p.G462W	ENST00000358487	NM_000141.4	462	Ggg/Tgg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77066848	77066848	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	33	336	0	ENST00000356341.3:c.637C>G	p.Pro213Ala	p.P213A	ENST00000356341	NM_002576.4	213	Cca/Gca																																																																															
ATM	472	MSKCC	GRCh37	11	108203561	108203561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	59	273	0	ENST00000278616.4:c.7861G>A	p.Glu2621Lys	p.E2621K	ENST00000278616	NM_000051.3	2621	Gag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108218013	108218013	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	52	207	0	ENST00000278616.4:c.8592C>A	p.Tyr2864Ter	p.Y2864*	ENST00000278616	NM_000051.3	2864	taC/taA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577055	7577067	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCCCCTTTCTT	GCTCCCCTTTCTT	-			P-0037831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	188	766	0	ENST00000269305.4:c.871_883del	p.Lys291LeufsTer50	p.K291Lfs*50	ENST00000269305	NM_001126112.2	291	AAGAAAGGGGAGCct/ct																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22161984	22161984	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	49	431	0	ENST00000215832.6:c.271C>G	p.Arg91Gly	p.R91G	ENST00000215832	NM_002745.4	91	Cga/Gga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467686	66467686	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	46	300	0	ENST00000273854.3:c.583C>A	p.Leu195Met	p.L195M	ENST00000273854	NM_004439.5	195	Ctg/Atg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178313	56178313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	58	258	0	ENST00000399503.3:c.3286G>A	p.Gly1096Ser	p.G1096S	ENST00000399503	NM_005921.1	1096	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112177253	112177253	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	97	293	0	ENST00000257430.4:c.5962A>G	p.Lys1988Glu	p.K1988E	ENST00000257430	NM_000038.5	1988	Aaa/Gaa																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020847	26020847	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138723860		P-0037831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	32	387	0	ENST00000357647.3:c.130C>T	p.Pro44Ser	p.P44S	ENST00000357647	NM_003529.2	44	Ccg/Tcg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165272	32165272	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	205	769	0	ENST00000375023.3:c.4856T>G	p.Leu1619Arg	p.L1619R	ENST00000375023	NM_004557.3	1619	cTg/cGg																																																																															
HGF	3082	MSKCC	GRCh37	7	81339523	81339523	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	78	368	0	ENST00000222390.5:c.1481G>T	p.Arg494Leu	p.R494L	ENST00000222390	NM_000601.4	494	cGa/cTa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87475993	87475993	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	87	801	0	ENST00000277120.3:c.1435C>T	p.Gln479Ter	p.Q479*	ENST00000277120		479	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	124	391	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
IGF2	3481	MSKCC	GRCh37	11	2156609	2156609	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	55	736	0	ENST00000434045.2:c.313G>T	p.Gly105Cys	p.G105C	ENST00000434045	NM_001127598.1	105	Ggc/Tgc																																																																															
BTK	695	MSKCC	GRCh37	X	100626628	100626628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	55	379	0	ENST00000308731.7:c.302C>A	p.Pro101His	p.P101H	ENST00000308731	NM_000061.2	101	cCc/cAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098795	47098795	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	64	834	0	ENST00000409792.3:c.6479del	p.Pro2160ArgfsTer88	p.P2160Rfs*88	ENST00000409792	NM_014159.6	2160	cCg/cg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47087982	47087982	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	40	418	0	ENST00000409792.3:c.7093C>T	p.Gln2365Ter	p.Q2365*	ENST00000409792	NM_014159.6	2365	Cag/Tag																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29195912	29195912	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	77	859	0	ENST00000240100.2:c.686C>G	p.Ser229Cys	p.S229C	ENST00000240100	NM_001394.6	229	tCc/tGc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045547	47045547	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	56	678	0	ENST00000329236.7:c.2280C>A	p.Tyr760Ter	p.Y760*	ENST00000329236	NM_001204466.1	760	taC/taA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0037767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	39	580	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396746	396746	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	26	579	0	ENST00000262320.3:c.280G>T	p.Asp94Tyr	p.D94Y	ENST00000262320	NM_003502.3	94	Gat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0036703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	201	255	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056104	26056104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	225	474	0	ENST00000343677.2:c.553G>A	p.Ala185Thr	p.A185T	ENST00000343677	NM_005319.3	185	Gct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0019138-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			410	44	387	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488657	212488657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019138-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	41	311	0	ENST00000342788.4:c.2192C>T	p.Thr731Met	p.T731M	ENST00000342788	NM_005235.2	731	aCg/aTg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135409	30135409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019138-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	32	206	0	ENST00000331968.5:c.409G>A	p.Ala137Thr	p.A137T	ENST00000331968	NM_002742.2	137	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	88	420	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0036525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	86	455	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175951	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	57	212	0	ENST00000257430.4:c.4660G>T	p.Glu1554Ter	p.E1554*	ENST00000257430	NM_000038.5	1554	Gaa/Taa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076862	41076862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	151	389	0	ENST00000373198.4:c.1558G>A	p.Glu520Lys	p.E520K	ENST00000373198	NM_133170.3	520	Gag/Aag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	258	365	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11184592	11184592	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	112	542	0	ENST00000361445.4:c.6625C>G	p.Leu2209Val	p.L2209V	ENST00000361445	NM_004958.3	2209	Ctg/Gtg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198274610	198274610	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139577219		P-0036525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	236	551	0	ENST00000335508.6:c.788C>T	p.Ala263Val	p.A263V	ENST00000335508	NM_012433.2	263	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112173531	112173531	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0036525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	57	314	0	ENST00000257430.4:c.2240C>G	p.Ser747Ter	p.S747*	ENST00000257430	NM_000038.5	747	tCa/tGa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59886111	59886111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	83	342	0	ENST00000259008.2:c.635G>A	p.Gly212Asp	p.G212D	ENST00000259008	NM_032043.2	212	gGc/gAc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918753	50918753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	102	670	0	ENST00000440232.2:c.2623C>T	p.Arg875Cys	p.R875C	ENST00000440232	NM_002691.3	875	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	256	553	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	73	632	0	ENST00000269305.4:c.731G>T	p.Gly244Val	p.G244V	ENST00000269305	NM_001126112.2	244	gGc/gTc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163297333	163297333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	30	577	1	ENST00000271452.3:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000271452	NM_145697.2	60	cGa/cAa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123256158	123256158	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	26	598	0	ENST00000358487.5:c.1751T>A	p.Met584Lys	p.M584K	ENST00000358487	NM_000141.4	584	aTg/aAg																																																																															
CBL	867	MSKCC	GRCh37	11	119103203	119103203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	41	563	0	ENST00000264033.4:c.241C>T	p.Pro81Ser	p.P81S	ENST00000264033	NM_005188.3	81	Cca/Tca																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060939	38060939	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	46	394	0	ENST00000250448.2:c.1050G>C	p.Lys350Asn	p.K350N	ENST00000250448	NM_004496.3	350	aaG/aaC																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58677800	58677800	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	79	604	3	ENST00000305921.3:c.25G>T	p.Val9Leu	p.V9L	ENST00000305921	NM_003620.3	9	Gtg/Ttg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610526	10610526	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	87	785	0	ENST00000171111.5:c.184C>T	p.Gln62Ter	p.Q62*	ENST00000171111	NM_203500.1	62	Cag/Tag																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18274088	18274088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	45	537	1	ENST00000222254.8:c.1306G>A	p.Glu436Lys	p.E436K	ENST00000222254	NM_005027.3	436	Gag/Aag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661749	227661749	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	44	638	1	ENST00000305123.5:c.1706C>A	p.Pro569Gln	p.P569Q	ENST00000305123	NM_005544.2	569	cCg/cAg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662158	227662158	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	45	628	0	ENST00000305123.5:c.1297T>C	p.Ser433Pro	p.S433P	ENST00000305123	NM_005544.2	433	Tcc/Ccc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799468	72799468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	61	756	0	ENST00000325599.8:c.1701G>T	p.Gln567His	p.Q567H	ENST00000325599	NM_018130.2	567	caG/caT																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156709	55156709	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	27	369	1	ENST00000257290.5:c.3110G>C	p.Arg1037Thr	p.R1037T	ENST00000257290	NM_006206.4	1037	aGg/aCg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280128	66280128	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	40	420	0	ENST00000273854.3:c.1561A>C	p.Lys521Gln	p.K521Q	ENST00000273854	NM_004439.5	521	Aaa/Caa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007296	143007296	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	54	524	0	ENST00000262992.4:c.2487+1G>T		p.X829_splice	ENST00000262992	NM_001101669.1	829																																																																																
FAT1	2195	MSKCC	GRCh37	4	187509966	187509966	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	62	545	0	ENST00000441802.2:c.13547A>G	p.His4516Arg	p.H4516R	ENST00000441802	NM_005245.3	4516	cAt/cGt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79966110	79966110	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	82	545	0	ENST00000265081.6:c.774C>A	p.Phe258Leu	p.F258L	ENST00000265081	NM_002439.4	258	ttC/ttA																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933121	39933121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	60	847	0	ENST00000378444.4:c.1478G>T	p.Gly493Val	p.G493V	ENST00000378444	NM_001123385.1	493	gGt/gTt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165349	32165399	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGACATCAGGGGTGTCACCCCATCTGTTGGTAAGACAGAGTAATGGGTCAA	TGACATCAGGGGTGTCACCCCATCTGTTGGTAAGACAGAGTAATGGGTCAA	CACGCCTGGCTAATTTTGTAGAGAGGGGGTTTTGCCATG			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	98	709	0	ENST00000375023.3:c.4757-28_4779delinsCATGGCAAAACCCCCTCTCTACAAAATTAGCCAGGCGTG		p.X1586_splice	ENST00000375023	NM_004557.3	1586																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602872	10602872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	298	967	1	ENST00000171111.5:c.706G>A	p.Asp236Asn	p.D236N	ENST00000171111	NM_203500.1	236	Gac/Aac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480306	89480306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	42	314	0	ENST00000336596.2:c.2143G>T	p.Asp715Tyr	p.D715Y	ENST00000336596	NM_005233.5	715	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0037222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	189	475	1	ENST00000269305.4:c.96+1G>A		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49438225	49438225	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	203	767	0	ENST00000301067.7:c.5044G>T	p.Glu1682Ter	p.E1682*	ENST00000301067	NM_003482.3	1682	Gag/Tag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438364	110438364	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	29	144	0	ENST00000375856.3:c.37G>T	p.Ala13Ser	p.A13S	ENST00000375856	NM_003749.2	13	Gcg/Tcg																																																																															
EP300	2033	MSKCC	GRCh37	22	41566487	41566487	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	65	450	0	ENST00000263253.7:c.4364A>G	p.Gln1455Arg	p.Q1455R	ENST00000263253	NM_001429.3	1455	cAg/cGg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86667969	86667969	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0037222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	101	340	0	ENST00000274376.6:c.1733T>G	p.Leu578Ter	p.L578*	ENST00000274376	NM_002890.2	578	tTa/tGa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012425	152012425	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0037222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	76	306	0	ENST00000262189.6:c.390-2A>G		p.X130_splice	ENST00000262189	NM_170606.2	130																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139396891	139396892	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	160	534	0	ENST00000277541.6:c.5216dup	p.Ala1740GlyfsTer32	p.A1740Gfs*32	ENST00000277541	NM_017617.3	1739	gtg/gtTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70354951	70354951	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	94	293	0	ENST00000374080.3:c.4873G>T	p.Gly1625Trp	p.G1625W	ENST00000374080		1625	Ggg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	190	486	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111877	56111878	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	11	13	0	ENST00000399503.3:c.478dup	p.Ala160GlyfsTer4	p.A160Gfs*4	ENST00000399503	NM_005921.1	159	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	346	623	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672758	86672758	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	118	353	0	ENST00000274376.6:c.2245C>T	p.Arg749Ter	p.R749*	ENST00000274376	NM_002890.2	749	Cga/Tga																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932274	36932274	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	381	689	1	ENST00000361632.4:c.2195A>T	p.Asp732Val	p.D732V	ENST00000361632		732	gAc/gTc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332741	70332741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	283	466	0	ENST00000373644.4:c.646G>T	p.Gly216Trp	p.G216W	ENST00000373644	NM_030625.2	216	Ggg/Tgg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77064582	77064582	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0037306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	272	467	0	ENST00000356341.3:c.835G>T	p.Gly279Cys	p.G279C	ENST00000356341	NM_002576.4	279	Ggt/Tgt																																																																															
AKT1	207	MSKCC	GRCh37	14	105239420	105239420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	496	533	0	ENST00000349310.3:c.967G>T	p.Asp323Tyr	p.D323Y	ENST00000349310	NM_001014432.1	323	Gac/Tac																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81819735	81819735	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	294	464	0	ENST00000359376.3:c.141G>C	p.Met47Ile	p.M47I	ENST00000359376	NM_002661.3	47	atG/atC																																																																															
NF1	4763	MSKCC	GRCh37	17	29670120	29670120	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	232	454	0	ENST00000358273.4:c.7156T>A	p.Phe2386Ile	p.F2386I	ENST00000358273	NM_001042492.2	2386	Ttt/Att																																																																															
APC	324	MSKCC	GRCh37	5	112176194	112176194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	226	379	0	ENST00000257430.4:c.4903G>T	p.Gly1635Trp	p.G1635W	ENST00000257430	NM_000038.5	1635	Ggg/Tgg																																																																															
MYC	4609	MSKCC	GRCh37	8	128752965	128752965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	104	377	0	ENST00000377970.2:c.1126G>A	p.Val376Ile	p.V376I	ENST00000377970	NM_002467.4	376	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	470	582	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	238	561	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
ATRX	546	MSKCC	GRCh37	X	76940000	76940000	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	123	288	0	ENST00000373344.5:c.748C>T	p.Arg250Ter	p.R250*	ENST00000373344	NM_000489.3	250	Cga/Tga																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740098	162740098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	100	305	0	ENST00000367921.3:c.1300C>T	p.Arg434Trp	p.R434W	ENST00000367921	NM_006182.2	434	Cgg/Tgg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753752	42753757	+	inframe_deletion	In_Frame_Del	DEL	GAAGAT	GAAGAT	-			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	60	723	0	ENST00000222329.4:c.507_512del	p.Ser170_Ser171del	p.S170_S171del	ENST00000222329	NM_006494.2	169	tcATCTTCc/tcc																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271209	26271209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	135	332	0	ENST00000305910.3:c.404G>A	p.Arg135Lys	p.R135K	ENST00000305910	NM_003534.2	135	aGa/aAa																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115276633	115276633	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	126	541	0	ENST00000438362.2:c.826G>C	p.Glu276Gln	p.E276Q	ENST00000438362	NM_001242891.1	276	Gaa/Caa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983065	201983065	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	303	652	0	ENST00000359651.3:c.914T>C	p.Phe305Ser	p.F305S	ENST00000359651		305	tTc/tCc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37649115	37649115	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	73	342	0	ENST00000447079.4:c.2220A>T	p.Gln740His	p.Q740H	ENST00000447079	NM_015083.1	740	caA/caT																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72873575	72873575	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	23	380	0	ENST00000325599.8:c.727G>C	p.Val243Leu	p.V243L	ENST00000325599	NM_018130.2	243	Gtg/Ctg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231668	66231668	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	62	428	0	ENST00000273854.3:c.2032G>C	p.Glu678Gln	p.E678Q	ENST00000273854	NM_004439.5	678	Gag/Cag																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39021200	39021200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	97	405	2	ENST00000357387.3:c.136G>T	p.Ala46Ser	p.A46S	ENST00000357387	NM_152756.3	46	Gcc/Tcc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411182	63411182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	231	328	0	ENST00000330258.3:c.1985C>T	p.Ser662Leu	p.S662L	ENST00000330258	NM_152424.3	662	tCa/tTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0037370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	76	363	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576870	7576870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs876659384		P-0037370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	98	548	0	ENST00000269305.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000269305	NM_001126112.2	326	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0037370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	36	268	2	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111012	193111012	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	30	164	0	ENST00000367435.3:c.545T>A	p.Ile182Asn	p.I182N	ENST00000367435	NM_024529.4	182	aTt/aAt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3795351	3795351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201874248		P-0037370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	34	241	1	ENST00000262367.5:c.3841G>A	p.Val1281Ile	p.V1281I	ENST00000262367	NM_004380.2	1281	Gtt/Att																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3808911	3808911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	107	491	0	ENST00000262367.5:c.3313G>T	p.Asp1105Tyr	p.D1105Y	ENST00000262367	NM_004380.2	1105	Gac/Tac																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205019	128205019	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	53	548	0	ENST00000341105.2:c.422A>G	p.Tyr141Cys	p.Y141C	ENST00000341105	NM_032638.4	141	tAc/tGc																																																																															
ATR	545	MSKCC	GRCh37	3	142204115	142204115	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201091477		P-0037370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	56	363	0	ENST00000350721.4:c.6088G>A	p.Ala2030Thr	p.A2030T	ENST00000350721	NM_001184.3	2030	Gcg/Acg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557967	187557967	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	24	380	0	ENST00000441802.2:c.3744del	p.Lys1248AsnfsTer28	p.K1248Nfs*28	ENST00000441802	NM_005245.3	1248	aaG/aa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913324		P-0037149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	124	464	0	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24133958	24133958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	17	218	0	ENST00000263121.7:c.109C>T	p.Arg37Cys	p.R37C	ENST00000263121	NM_003073.3	37	Cgt/Tgt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106547198	106547198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	54	233	0	ENST00000369096.4:c.435C>A	p.His145Gln	p.H145Q	ENST00000369096	NM_001198.3	145	caC/caA																																																																															
FYN	2534	MSKCC	GRCh37	6	112017597	112017597	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	45	459	0	ENST00000368678.4:c.916del	p.Glu306AsnfsTer10	p.E306Nfs*10	ENST00000368678		306	Gaa/aa																																																																															
FANCC	2176	MSKCC	GRCh37	9	97934393	97934393	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	20	270	0	ENST00000289081.3:c.382G>C	p.Asp128His	p.D128H	ENST00000289081	NM_000136.2	128	Gat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0037161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	260	550	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
AKT3	10000	MSKCC	GRCh37	1	243675668	243675668	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	46	445	0	ENST00000263826.5:c.1312G>T	p.Glu438Ter	p.E438*	ENST00000263826	NM_005465.4	438	Gaa/Taa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88726671	88726671	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	39	417	0	ENST00000360948.2:c.373A>G	p.Lys125Glu	p.K125E	ENST00000360948	NM_001012338.2	125	Aag/Gag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044985	47044985	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	73	364	0	ENST00000329236.7:c.2079del	p.Glu694ArgfsTer30	p.E694Rfs*30	ENST00000329236	NM_001204466.1	693	Aaa/aa																																																																															
AR	367	MSKCC	GRCh37	X	66931504	66931504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3852	3066	370	1	ENST00000374690.3:c.2146G>A	p.Val716Met	p.V716M	ENST00000374690	NM_000044.3	716	Gtg/Atg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464410	120464421	+	inframe_deletion	In_Frame_Del	DEL	CTGAGACTTGCA	CTGAGACTTGCA	-			P-0017169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	109	734	0	ENST00000256646.2:c.5225_5236del	p.Val1742_Ser1745del	p.V1742_S1745del	ENST00000256646	NM_024408.3	1742	gTGCAAGTCTCAGaa/gaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431254	49431258	+	frameshift_variant	Frame_Shift_Del	DEL	CATGG	CATGG	-			P-0017169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	173	445	0	ENST00000301067.7:c.9881_9885del	p.Ala3294ValfsTer5	p.A3294Vfs*5	ENST00000301067	NM_003482.3	3294	gCCATG/g																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274157	10274158	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0017169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	196	566	0	ENST00000330684.3:c.111_112delinsTT	p.Val38Leu	p.V38L	ENST00000330684	NM_001134407.1	37	gcGGtg/gcTTtg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056353	26056353	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	55	391	0	ENST00000343677.2:c.304del	p.Ser102LeufsTer65	p.S102Lfs*65	ENST00000343677	NM_005319.3	102	Tct/ct																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188758	32188758	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	138	613	0	ENST00000375023.3:c.796C>A	p.Pro266Thr	p.P266T	ENST00000375023	NM_004557.3	266	Cca/Aca																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0026589-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			333	49	283	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
SESN3	143686	MSKCC	GRCh37	11	94917634	94917635	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0026589-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			559	114	598	0	ENST00000536441.1:c.886_887del	p.Glu296LysfsTer19	p.E296Kfs*19	ENST00000536441	NM_144665.3	296	GAa/a																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0036883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	129	465	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	231	775	0	ENST00000374672.4:c.1225A>C	p.Lys409Gln	p.K409Q	ENST00000374672	NM_004235.4	409	Aag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578415	7578415	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	175	624	0	ENST00000269305.4:c.515T>A	p.Val172Asp	p.V172D	ENST00000269305	NM_001126112.2	172	gTt/gAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878749	151878749	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1211949081		P-0036883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	139	484	1	ENST00000262189.6:c.6196C>T	p.Arg2066Ter	p.R2066*	ENST00000262189	NM_170606.2	2066	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974676	21974676	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0036883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	172	386	0	ENST00000304494.5:c.150+1G>T		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																																
RBM10	8241	MSKCC	GRCh37	X	47006836	47006836	+	5_prime_UTR_variant	5'UTR	SNP	C	C	T			P-0036870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	76	330	1	ENST00000329236.7:c.-45C>T		p.*15*	ENST00000329236	NM_001204466.1	15																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31022903	31022903	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	31	622	0	ENST00000375687.4:c.2388G>A	p.Trp796Ter	p.W796*	ENST00000375687	NM_015338.5	796	tgG/tgA																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027051	71027051	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	CTG			P-0036870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	109	587	0	ENST00000318789.4:c.1276delinsCAG	p.Thr426GlnfsTer49	p.T426Qfs*49	ENST00000318789	NM_032682.5	426	Acc/CAGcc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021785	71021785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs112795301		P-0006908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	391	316	2	ENST00000318789.4:c.1573C>T	p.Arg525Ter	p.R525*	ENST00000318789	NM_032682.5	525	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922364	178922364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012601-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	9	313	0	ENST00000263967.3:c.1133G>T	p.Cys378Phe	p.C378F	ENST00000263967	NM_006218.2	378	tGt/tTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0012601-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	44	356	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0013297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	312	725	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206892	36206892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	45	269	0	ENST00000300305.3:c.620G>A	p.Arg207Gln	p.R207Q	ENST00000300305		207	cGg/cAg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965736	93965736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1312	339	743	1	ENST00000369303.4:c.2192C>T	p.Thr731Ile	p.T731I	ENST00000369303	NM_004440.3	731	aCa/aTa																																																																															
CBFB	865	MSKCC	GRCh37	16	67063718	67063719	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TA	TA	-			P-0013297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	74	275	0	ENST00000412916.2:c.165+2_165+3del		p.X55_splice	ENST00000412916		55																																																																																
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0014378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	379	488	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372117	55372118	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0014378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	264	194	147	ENST00000297316.4:c.807_808delinsAT	p.Met270Leu	p.M270L	ENST00000297316	NM_022454.3	269	ccCAtg/ccATtg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022853	31022853	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	169	406	0	ENST00000375687.4:c.2338C>T	p.Gln780Ter	p.Q780*	ENST00000375687	NM_015338.5	780	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115711	8115711	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	118	390	1	ENST00000346208.3:c.1060delC	p.Leu354Ter	p.L354*	ENST00000346208		353	Ccc/cc																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0014378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	219	209	0	ENST00000412916.2:c.165+1G>A		p.X55_splice	ENST00000412916		55																																																																																
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0014384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	203	530	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0014384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	183	730	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																															
CDH1	999	MSKCC	GRCh37	16	68844247	68844247	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0014384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	83	522	0	ENST00000261769.5:c.832+3A>G		p.X278_splice	ENST00000261769	NM_004360.3	278																																																																																
TET2	54790	MSKCC	GRCh37	4	106162505	106162505	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	48	294	0	ENST00000380013.4:c.3419T>C	p.Ile1140Thr	p.I1140T	ENST00000380013	NM_001127208.2	1140	aTt/aCt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69058476	69058476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	148	573	0	ENST00000288368.4:c.4120C>T	p.Arg1374Trp	p.R1374W	ENST00000288368	NM_024870.2	1374	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0015435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	364	497	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217909	2217909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	354	521	1	ENST00000398665.3:c.2683G>A	p.Glu895Lys	p.E895K	ENST00000398665	NM_032482.2	895	Gag/Aag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99192881	99192881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	174	268	0	ENST00000268035.6:c.71C>T	p.Ser24Leu	p.S24L	ENST00000268035	NM_000875.3	24	tCg/tTg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138403538	138403538	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	79	458	0	ENST00000289153.2:c.2244G>C	p.Gln748His	p.Q748H	ENST00000289153	NM_006219.2	748	caG/caC																																																																															
KDM5A	5927	MSKCC	GRCh37	12	420158	420158	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	289	326	0	ENST00000399788.2:c.3109C>G	p.Leu1037Val	p.L1037V	ENST00000399788	NM_001042603.1	1037	Ctt/Gtt																																																																															
MDM2	4193	MSKCC	GRCh37	12	69230464	69230464	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	190	292	0	ENST00000462284.1:c.853A>C	p.Thr285Pro	p.T285P	ENST00000462284	NM_002392.5	285	Act/Cct																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001425	29001425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	151	215	0	ENST00000282397.4:c.1307C>T	p.Ser436Leu	p.S436L	ENST00000282397	NM_002019.4	436	tCa/tTa																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082546	16082546	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	253	372	0	ENST00000281043.3:c.360C>G	p.Phe120Leu	p.F120L	ENST00000281043	NM_005378.4	120	ttC/ttG																																																																															
GNAS	2778	MSKCC	GRCh37	20	57480468	57480468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	198	280	2	ENST00000371085.3:c.463G>A	p.Glu155Lys	p.E155K	ENST00000371085	NM_000516.4	155	Gag/Aag																																																																															
PPARG	5468	MSKCC	GRCh37	3	12447410	12447410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	234	399	0	ENST00000287820.6:c.649G>A	p.Glu217Lys	p.E217K	ENST00000287820	NM_015869.4	217	Gag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879643	151879643	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	111	147	0	ENST00000262189.6:c.5302G>T	p.Glu1768Ter	p.E1768*	ENST00000262189	NM_170606.2	1768	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	271	666	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	261	635	0	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0015760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	2761	746	2	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584693	187584693	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	176	756	0	ENST00000441802.2:c.3340C>T	p.Gln1114Ter	p.Q1114*	ENST00000441802	NM_005245.3	1114	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830412	72830412	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	56	300	0	ENST00000268489.5:c.6169C>T	p.Gln2057Ter	p.Q2057*	ENST00000268489	NM_006885.3	2057	Cag/Tag																																																																															
RARA	5914	MSKCC	GRCh37	17	38487561	38487561	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	171	680	0	ENST00000254066.5:c.91A>G	p.Met31Val	p.M31V	ENST00000254066	NM_000964.3	31	Atg/Gtg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59934581	59934581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	532	321	0	ENST00000259008.2:c.217G>A	p.Asp73Asn	p.D73N	ENST00000259008	NM_032043.2	73	Gat/Aat																																																																															
BRD4	23476	MSKCC	GRCh37	19	15378237	15378237	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	270	596	0	ENST00000263377.2:c.549G>C	p.Arg183Ser	p.R183S	ENST00000263377	NM_058243.2	183	agG/agC																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004998	150004998	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	84	456	0	ENST00000253339.5:c.1227G>C	p.Met409Ile	p.M409I	ENST00000253339		409	atG/atC																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	105	609	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257071	16257071	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	89	732	0	ENST00000375759.3:c.4336G>A	p.Ala1446Thr	p.A1446T	ENST00000375759	NM_015001.2	1446	Gct/Act																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061132	38061183	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCT	CCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCT	GC			P-0015793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	91	410	2	ENST00000250448.2:c.806_857delinsGC	p.Glu269GlyfsTer7	p.E269Gfs*7	ENST00000250448	NM_004496.3	269	gAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGc/gGCc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831946	72831946	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	71	788	0	ENST00000268489.5:c.4635C>A	p.Tyr1545Ter	p.Y1545*	ENST00000268489	NM_006885.3	1545	taC/taA																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068418	26068418	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	55	481	0	ENST00000435504.4:c.72C>A	p.Tyr24Ter	p.Y24*	ENST00000435504		24	taC/taA																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591076	67591076	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	127	410	0	ENST00000274335.5:c.1669C>G	p.Arg557Gly	p.R557G	ENST00000274335		557	Cga/Gga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717710	89717714	+	protein_altering_variant	In_Frame_Ins	INS	GCCGT	GCCGT	AGTACATGAATATC			P-0015793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	63	544	0	ENST00000371953.3:c.735_739delinsAGTACATGAATATC	p.Pro246delinsValHisGluTyr	p.P246delinsVHEY	ENST00000371953	NM_000314.4	245	caGCCGTta/caAGTACATGAATATCta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019831-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			615	269	690	0	ENST00000269305.4:c.842A>G	p.Asp281Gly	p.D281G	ENST00000269305	NM_001126112.2	281	gAc/gGc																																																																															
APC	324	MSKCC	GRCh37	5	112174835	112174835	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0019831-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			292	104	256	0	ENST00000257430.4:c.3544A>T	p.Lys1182Ter	p.K1182*	ENST00000257430	NM_000038.5	1182	Aaa/Taa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17122518	17122518	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019831-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			527	216	650	0	ENST00000285071.4:c.877G>T	p.Glu293Ter	p.E293*	ENST00000285071	NM_144997.5	293	Gaa/Taa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98221909	98221909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019831-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			618	152	583	0	ENST00000331920.6:c.2860G>T	p.Asp954Tyr	p.D954Y	ENST00000331920	NM_000264.3	954	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0020021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	921	411	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11273604	11273604	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	393	260	0	ENST00000361445.4:c.3137C>G	p.Thr1046Ser	p.T1046S	ENST00000361445	NM_004958.3	1046	aCc/aGc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258338	16258338	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0020021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	814	475	0	ENST00000375759.3:c.5603T>A	p.Leu1868Ter	p.L1868*	ENST00000375759	NM_015001.2	1868	tTg/tAg																																																																															
RB1	5925	MSKCC	GRCh37	13	48936841	48936948	+	splice_region_variant,intron_variant	Splice_Region	DEL	AGTAGTAGAATGTTACCAAGATTATTTTTGACCTAAGTTATAGTTAGAATACTTCATTATTTTATATGATGGATGTACAATTGTTCTTATCTAATTTACCACTTTTAC	AGTAGTAGAATGTTACCAAGATTATTTTTGACCTAAGTTATAGTTAGAATACTTCATTATTTTATATGATGGATGTACAATTGTTCTTATCTAATTTACCACTTTTAC	-			P-0020021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	151	48	0	ENST00000267163.4:c.719-108_719-1del		p.X240_splice	ENST00000267163	NM_000321.2	240																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32163678	32163678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	263	306	0	ENST00000375023.3:c.5548G>A	p.Val1850Met	p.V1850M	ENST00000375023	NM_004557.3	1850	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	48	757	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0020672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	18	564	3	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			43	25	587	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			25	24	294	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832398	72832398	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			225	67	393	0	ENST00000268489.5:c.4183G>C	p.Asp1395His	p.D1395H	ENST00000268489	NM_006885.3	1395	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577596	7577597	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0023748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			159	101	472	0	ENST00000269305.4:c.683_684dup	p.Cys229ThrfsTer19	p.C229Tfs*19	ENST00000269305	NM_001126112.2	228	-/AC																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526700	106526700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			64	22	345	2	ENST00000359195.3:c.2993C>T	p.Ser998Phe	p.S998F	ENST00000359195	NM_002649.2	998	tCt/tTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	99	702	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155725	56155726	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0024332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	188	496	0	ENST00000399503.3:c.819_820delAG	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	273	AGa/a																																																																															
TET2	54790	MSKCC	GRCh37	4	106180845	106180845	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	22	544	0	ENST00000380013.4:c.3873G>C	p.Trp1291Cys	p.W1291C	ENST00000380013	NM_001127208.2	1291	tgG/tgC																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794132	242794132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	10	883	0	ENST00000334409.5:c.596C>A	p.Thr199Lys	p.T199K	ENST00000334409	NM_005018.2	199	aCa/aAa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643726	52643726	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	113	885	0	ENST00000394830.3:c.2170A>G	p.Met724Val	p.M724V	ENST00000394830	NM_018313.4	724	Atg/Gtg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435234	110435234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	53	397	1	ENST00000375856.3:c.3167C>T	p.Pro1056Leu	p.P1056L	ENST00000375856	NM_003749.2	1056	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579545	7579546	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0027409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	210	739	0	ENST00000269305.4:c.141_142del	p.Asp48ArgfsTer3	p.D48Rfs*3	ENST00000269305	NM_001126112.2	47	ccGGac/ccac																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46254130	46254130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	104	517	0	ENST00000371998.3:c.262A>C	p.Thr88Pro	p.T88P	ENST00000371998		88	Act/Cct																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484267	8484267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	160	613	0	ENST00000356435.5:c.3265G>A	p.Gly1089Arg	p.G1089R	ENST00000356435		1089	Gga/Aga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0028925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	55	470	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836985	89836985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	11	529	0	ENST00000389301.3:c.2209G>A	p.Ala737Thr	p.A737T	ENST00000389301	NM_000135.2	737	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7578421	7578421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	10	548	0	ENST00000269305.4:c.509C>T	p.Thr170Met	p.T170M	ENST00000269305	NM_001126112.2	170	aCg/aTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0028925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	100	576	2	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
RAB35	11021	MSKCC	GRCh37	12	120536873	120536873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	15	628	1	ENST00000229340.5:c.313G>A	p.Glu105Lys	p.E105K	ENST00000229340	NM_006861.6	105	Gaa/Aaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115940	8115940	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	145	404	0	ENST00000346208.3:c.1287del	p.Phe430LeufsTer45	p.F430Lfs*45	ENST00000346208		429	tCc/tc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118352538	118352538	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	109	599	0	ENST00000534358.1:c.3743del	p.Ala1248GlufsTer108	p.A1248Efs*108	ENST00000534358	NM_005933.3	1248	gCa/ga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351844	89351844	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	10	743	1	ENST00000301030.4:c.1106A>G	p.Lys369Arg	p.K369R	ENST00000301030	NM_001256183.1	369	aAg/aGg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177762	56177763	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	47	382	0	ENST00000399503.3:c.2739dup	p.Gly914ArgfsTer16	p.G914Rfs*16	ENST00000399503	NM_005921.1	912	gga/ggAa																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27777996	27777996	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	125	533	0	ENST00000369163.2:c.145C>G	p.Leu49Val	p.L49V	ENST00000369163	NM_003536.2	49	Ctc/Gtc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151841834	151841834	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	57	314	0	ENST00000262189.6:c.14307G>A	p.Trp4769Ter	p.W4769*	ENST00000262189	NM_170606.2	4769	tgG/tgA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060992	38061010	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGGCTGGCGGCGGGCCC	GGGGGCTGGCGGCGGGCCC	-			P-0029875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	45	271	0	ENST00000250448.2:c.979_997del	p.Gly327ArgfsTer17	p.G327Rfs*17	ENST00000250448	NM_004496.3	327	GGGCCCGCCGCCAGCCCCCag/ag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0030053-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			330	306	427	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998756	100998756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030053-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			444	96	459	1	ENST00000325455.5:c.1046C>T	p.Ser349Leu	p.S349L	ENST00000325455	NM_001202474.3	349	tCg/tTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259442	55259442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030053-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	218	344	0	ENST00000275493.2:c.2500G>T	p.Val834Leu	p.V834L	ENST00000275493	NM_005228.3	834	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0030053-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			47	269	503	1	ENST00000269305.4:c.559+1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
MCL1	4170	MSKCC	GRCh37	1	150550938	150550938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030053-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			736	124	354	0	ENST00000369026.2:c.718G>A	p.Glu240Lys	p.E240K	ENST00000369026	NM_021960.4	240	Gaa/Aaa																																																																															
RB1	5925	MSKCC	GRCh37	13	48942698	48942701	+	frameshift_variant	Frame_Shift_Del	DEL	TTGA	TTGA	-			P-0030053-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			37	177	293	0	ENST00000267163.4:c.1086_1089del	p.Asp363LysfsTer3	p.D363Kfs*3	ENST00000267163	NM_000321.2	362	cTTGAt/ct																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500777	149500777	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030053-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			519	240	414	0	ENST00000261799.4:c.2453C>A	p.Ala818Asp	p.A818D	ENST00000261799	NM_002609.3	818	gCc/gAc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520432	176520432	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030053-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			439	343	643	0	ENST00000292408.4:c.1277G>T	p.Gly426Val	p.G426V	ENST00000292408	NM_213647.1	426	gGc/gTc																																																																															
RAC1	5879	MSKCC	GRCh37	7	6442022	6442022	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030053-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			128	197	185	0	ENST00000356142.4:c.581C>G	p.Ala194Gly	p.A194G	ENST00000356142	NM_018890.3	194	gCa/gGa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52668811	52668811	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030053-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			186	27	331	0	ENST00000394830.3:c.1108G>C	p.Glu370Gln	p.E370Q	ENST00000394830	NM_018313.4	370	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0030305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	238	693	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111494	8111495	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTGGAGG			P-0030305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	414	615	0	ENST00000346208.3:c.981_987dupCTGGAGG	p.Arg330LeufsTer24	p.R330Lfs*24	ENST00000346208		327	ctc/ctCTGGAGGc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251601	212251601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	148	437	0	ENST00000342788.4:c.3458C>T	p.Pro1153Leu	p.P1153L	ENST00000342788	NM_005235.2	1153	cCt/cTt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0031823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	242	575	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871249	12871249	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0031823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	15	132	1	ENST00000228872.4:c.475+1G>A		p.X159_splice	ENST00000228872	NM_004064.3	159																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38061463	38061463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	225	579	0	ENST00000250448.2:c.526A>G	p.Ile176Val	p.I176V	ENST00000250448	NM_004496.3	176	Atc/Gtc																																																																															
IL10	3586	MSKCC	GRCh37	1	206944257	206944257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	68	423	0	ENST00000423557.1:c.373C>T	p.Arg125Cys	p.R125C	ENST00000423557	NM_000572.2	125	Cgc/Tgc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178151	56178152	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	12	378	0	ENST00000399503.3:c.3127dup	p.Ser1043PhefsTer14	p.S1043Ffs*14	ENST00000399503	NM_005921.1	1042	ctt/cTtt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44733235	44733235	+	splice_donor_variant	Splice_Site	DEL	T	T	-			P-0031823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	51	416	0	ENST00000377967.4:c.225+2del		p.X75_splice	ENST00000377967	NM_021140.2	75																																																																																
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0032228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	49	560	2	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	18	714	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46511750	46511750	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	54	526	2	ENST00000262741.5:c.1027A>T	p.Ile343Phe	p.I343F	ENST00000262741	NM_003629.3	343	Atc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578500	7578501	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	AA			P-0032228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	79	804	0	ENST00000269305.4:c.429_430delinsTT	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	143	gtGCag/gtTTag																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0032318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	150	533	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727483	66727483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	12	489	0	ENST00000307102.5:c.199G>A	p.Asp67Asn	p.D67N	ENST00000307102	NM_002755.3	67	Gac/Aac																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162860	47162860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	10	440	0	ENST00000409792.3:c.3266G>A	p.Arg1089Gln	p.R1089Q	ENST00000409792	NM_014159.6	1089	cGg/cAg																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	115	770	1	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045522	47045522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	109	597	0	ENST00000329236.7:c.2255C>T	p.Pro752Leu	p.P752L	ENST00000329236	NM_001204466.1	752	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0032489-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			92	71	195	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40828000	40828000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032489-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			480	66	447	0	ENST00000373198.4:c.2428C>A	p.Gln810Lys	p.Q810K	ENST00000373198	NM_133170.3	810	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0032489-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	249	674	0	ENST00000269305.4:c.672+1G>C		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0032490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	78	350	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850991	63850991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	41	518	0	ENST00000279873.7:c.1769C>T	p.Pro590Leu	p.P590L	ENST00000279873	NM_032199.2	590	cCc/cTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692949	89692949	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	246	560	0	ENST00000371953.3:c.433T>G	p.Phe145Val	p.F145V	ENST00000371953	NM_000314.4	145	Ttt/Gtt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779623	3779623	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	219	749	0	ENST00000262367.5:c.5425A>C	p.Lys1809Gln	p.K1809Q	ENST00000262367	NM_004380.2	1809	Aaa/Caa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027198	48027198	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	130	603	0	ENST00000234420.5:c.2076A>T	p.Lys692Asn	p.K692N	ENST00000234420	NM_000179.2	692	aaA/aaT																																																																															
EP300	2033	MSKCC	GRCh37	22	41573282	41573282	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	44	743	0	ENST00000263253.7:c.5567C>G	p.Thr1856Arg	p.T1856R	ENST00000263253	NM_001429.3	1856	aCg/aGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916860	178916863	+	missense_variant	Missense_Mutation	ONP	TTTG	TTTG	AAGA			P-0032490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	186	672	2	ENST00000263967.3:c.247_250delinsAAGA	p.Phe83_Asp84delinsLysAsn	p.F83_D84delinsKN	ENST00000263967	NM_006218.2	83	TTTGat/AAGAat																																																																															
APC	324	MSKCC	GRCh37	5	112174840	112174840	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0032490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	10	334	0	ENST00000257430.4:c.3549T>G	p.Tyr1183Ter	p.Y1183*	ENST00000257430	NM_000038.5	1183	taT/taG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577523	7577524	+	protein_altering_variant	In_Frame_Ins	INS	-	-	CAT			P-0032490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	212	637	0	ENST00000269305.4:c.757_758insATG	p.Thr253delinsAsnAla	p.T253delinsNA	ENST00000269305	NM_001126112.2	253	acc/aATGcc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23634449	23634449	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	63	424	0	ENST00000261584.4:c.2837C>T	p.Ala946Val	p.A946V	ENST00000261584	NM_024675.3	946	gCa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0032492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	272	687	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31016126	31016126	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0032492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	119	635	1	ENST00000375687.4:c.374-2A>G		p.X125_splice	ENST00000375687	NM_015338.5	125																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0032492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	111	462	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0032492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	88	416	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175388	112175389	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	54	350	0	ENST00000257430.4:c.4098dup	p.Gln1367SerfsTer8	p.Q1367Sfs*8	ENST00000257430	NM_000038.5	1366	gct/gcTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151864361	151864361	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	85	609	0	ENST00000262189.6:c.9620A>C	p.Lys3207Thr	p.K3207T	ENST00000262189	NM_170606.2	3207	aAa/aCa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	169	303	0				ENST00000310581	NM_198253.2																																																																																	
ARID1A	8289	MSKCC	GRCh37	1	27106562	27106562	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	245	557	0	ENST00000324856.7:c.6176del	p.Asn2059ThrfsTer76	p.N2059Tfs*76	ENST00000324856	NM_006015.4	2058	gAa/ga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604697	48604697	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	35	327	0	ENST00000342988.3:c.1519A>G	p.Lys507Glu	p.K507E	ENST00000342988	NM_005359.5	507	Aaa/Gaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970979	21970979	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	95	611	0	ENST00000304494.5:c.379del	p.Ala127HisfsTer19	p.A127Hfs*19	ENST00000304494	NM_000077.4	127	Gca/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0032511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	104	732	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242469	55242495	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAGCAACATCTCCGAAAGCC	TTAAGAGAAGCAACATCTCCGAAAGCC	GCAACA			P-0032511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	30	338	1	ENST00000275493.2:c.2239_2265delinsGCAACA	p.Leu747_Ala755delinsAlaThr	p.L747_A755delinsAT	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAACATCTCCGAAAGCC/GCAACA																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509734	106509734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	85	439	2	ENST00000359195.3:c.1728G>T	p.Trp576Cys	p.W576C	ENST00000359195	NM_002649.2	576	tgG/tgT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	42	637	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	68	760	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0032535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	19	401	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0032569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	50	547	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0032569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	276	596	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
PARP1	142	MSKCC	GRCh37	1	226555216	226555216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	45	508	1	ENST00000366794.5:c.2371G>A	p.Asp791Asn	p.D791N	ENST00000366794	NM_001618.3	791	Gat/Aat																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771831816		P-0032569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	135	431	0	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161398	55161398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	245	443	0	ENST00000257290.5:c.3229G>A	p.Gly1077Ser	p.G1077S	ENST00000257290	NM_006206.4	1077	Ggc/Agc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624275	89624275	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	37	390	1	ENST00000371953.3:c.49C>T	p.Gln17Ter	p.Q17*	ENST00000371953	NM_000314.4	17	Caa/Taa																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78435689	78435690	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	C			P-0032601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	16	390	0	ENST00000370768.2:c.130_131delinsG	p.Lys44GlufsTer10	p.K44Efs*10	ENST00000370768	NM_003902.3	44	AAa/Ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0032609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	160	352	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MSI1	4440	MSKCC	GRCh37	12	120794800	120794800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	588	859	1	ENST00000257552.2:c.557C>T	p.Pro186Leu	p.P186L	ENST00000257552	NM_002442.3	186	cCa/cTa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449790	149449790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	412	592	1	ENST00000286301.3:c.1274C>T	p.Pro425Leu	p.P425L	ENST00000286301	NM_005211.3	425	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0032612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	223	718	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0032612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	39	319	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0032612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	75	559	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	26	216	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31025008	31025008	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150119795		P-0032612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	341	567	0	ENST00000375687.4:c.4493C>T	p.Thr1498Met	p.T1498M	ENST00000375687	NM_015338.5	1498	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829895	72829895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	111	737	0	ENST00000268489.5:c.6686C>T	p.Pro2229Leu	p.P2229L	ENST00000268489	NM_006885.3	2229	cCt/cTt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682173	37682173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	181	597	0	ENST00000447079.4:c.3364C>A	p.Leu1122Met	p.L1122M	ENST00000447079	NM_015083.1	1122	Ctg/Atg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910785	29910785	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	80	738	0	ENST00000376809.5:c.325T>A	p.Tyr109Asn	p.Y109N	ENST00000376809	NM_002116.7	109	Tac/Aac																																																																															
SMO	6608	MSKCC	GRCh37	7	128852272	128852272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	142	736	0	ENST00000249373.3:c.2344G>T	p.Asp782Tyr	p.D782Y	ENST00000249373	NM_005631.4	782	Gat/Tat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044952	47044952	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	167	477	1	ENST00000329236.7:c.2044G>T	p.Ala682Ser	p.A682S	ENST00000329236	NM_001204466.1	682	Gcc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	50	423	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	35	329	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106197443	106197443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	34	259	0	ENST00000380013.4:c.5776C>T	p.Arg1926Cys	p.R1926C	ENST00000380013	NM_001127208.2	1926	Cgt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108196879	108196880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	58	356	0	ENST00000278616.4:c.6908dupA	p.Glu2304GlyfsTer69	p.E2304Gfs*69	ENST00000278616	NM_000051.3	2301	gca/gcAa																																																																															
ATM	472	MSKCC	GRCh37	11	108124712	108124712	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	40	403	1	ENST00000278616.4:c.2071del	p.Asp691IlefsTer12	p.D691Ifs*12	ENST00000278616	NM_000051.3	690	ctG/ct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	122	656	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524486	44524486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	22	300	0	ENST00000291552.4:c.71T>C	p.Ile24Thr	p.I24T	ENST00000291552	NM_006758.2	24	aTt/aCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	111	861	0	ENST00000269305.4:c.772del	p.Glu258LysfsTer87	p.E258Kfs*87	ENST00000269305	NM_001126112.2	258	Gaa/aa																																																																															
CCND1	595	MSKCC	GRCh37	11	69465886	69465886	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0032631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1772	117	745	0	ENST00000227507.2:c.724G>T	p.Asp242Tyr	p.D242Y	ENST00000227507	NM_053056.2	242	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380328	25380328	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	87	512	0	ENST00000256078.4:c.130G>C	p.Val44Leu	p.V44L	ENST00000256078	NM_033360.2	44	Gta/Cta																																																																															
XPO1	7514	MSKCC	GRCh37	2	61715828	61715828	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	28	567	0	ENST00000401558.2:c.2101G>C	p.Ala701Pro	p.A701P	ENST00000401558	NM_003400.3	701	Gct/Cct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	149	469	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0032633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	142	517	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0032633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	96	335	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411276	63411276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	481	886	1	ENST00000330258.3:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000330258	NM_152424.3	631	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119974	70120026	+	frameshift_variant	Frame_Shift_Del	DEL	GCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAGGCGCCGCC	GCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAGGCGCCGCC	-			P-0032633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	44	288	0	ENST00000245479.2:c.984_1036del	p.Ser330AlafsTer230	p.S330Afs*230	ENST00000245479	NM_000346.3	326	GCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAGGCGCCGCCg/g																																																																															
APC	324	MSKCC	GRCh37	5	112162813	112162813	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	97	405	0	ENST00000257430.4:c.1417C>T	p.Gln473Ter	p.Q473*	ENST00000257430	NM_000038.5	473	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0032667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	285	916	3	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0032667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	73	357	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0032667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	194	525	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117715847	117715847	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	59	486	0	ENST00000368508.3:c.911G>T	p.Arg304Ile	p.R304I	ENST00000368508	NM_002944.2	304	aGa/aTa																																																																															
APC	324	MSKCC	GRCh37	5	112175547	112175548	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	67	378	1	ENST00000257430.4:c.4260dup	p.Ser1421GlnfsTer2	p.S1421Qfs*2	ENST00000257430	NM_000038.5	1419	agc/agCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	41	520	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0032669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	28	623	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0032669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	43	707	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	16	352	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0032669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	18	338	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
WT1	7490	MSKCC	GRCh37	11	32455870	32456600	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTGGCGTTTCCTTAATTAACAAAACTCTCCCCAAGGCAGAGCCAGACACTGCGCCGGTCTCCTGGTTCCACTCCCGTGGGGACTAGCAGTCCCGGAATCTCTCGGACTCTAAGGGGCCCCAGACGCCCTCCCGGCTCTTGCGAACAGTCAGGCTCCTAGCTCTGCCTGGCTTTGGAGGATGTCGGGGGCCAGTGCCTGCGTGCACTCCCACTCTCCGGCCTCCTCCCCAGCCGCCGCTTCCGCTATCCTCACGGCCCTTGGGAAGCAGCTGGGTAAGAGCTGCGGTCAAAAGGGGTAGGAGAGGGGGGTGTCCTAGAGCGGAGAGTCCCTGGCGCCACTGCCCCGCGCGTAGGGGGCGCTCCCCGGCCTACTTACCCTGATTGCGAATAGCGGGCTGGCTCTCGAGGCAGCTGGGCAGGTAGGGCGCGTTAGGAAACATCCTGGCCTGGCCGGATGACGCCTGGCTGGGCGGAGGAGGACCGAAGGGCCCGTAGCGACAGGCTCCGGCTGTGCCAGTGAACTGGCCGGAAAAGTGGACAGTGAAGGCGCTCAGGCACTGCTCCTCGTGCGGCTCCGCGCCGCCCCAGCTCGGCTCCTGTTTGATGAAGGAGTGAGGCGGCGGCGGCGGGGGTGGCGGCGGAGCCGGTGGCGGCGCGGGGCCGCCCAACGACCCGTAAGCCGAAGCGCCCGGGGGCGCAAAGTCCAGCACCGGCGCCCACTGCGCCGCGCC	TTTGGCGTTTCCTTAATTAACAAAACTCTCCCCAAGGCAGAGCCAGACACTGCGCCGGTCTCCTGGTTCCACTCCCGTGGGGACTAGCAGTCCCGGAATCTCTCGGACTCTAAGGGGCCCCAGACGCCCTCCCGGCTCTTGCGAACAGTCAGGCTCCTAGCTCTGCCTGGCTTTGGAGGATGTCGGGGGCCAGTGCCTGCGTGCACTCCCACTCTCCGGCCTCCTCCCCAGCCGCCGCTTCCGCTATCCTCACGGCCCTTGGGAAGCAGCTGGGTAAGAGCTGCGGTCAAAAGGGGTAGGAGAGGGGGGTGTCCTAGAGCGGAGAGTCCCTGGCGCCACTGCCCCGCGCGTAGGGGGCGCTCCCCGGCCTACTTACCCTGATTGCGAATAGCGGGCTGGCTCTCGAGGCAGCTGGGCAGGTAGGGCGCGTTAGGAAACATCCTGGCCTGGCCGGATGACGCCTGGCTGGGCGGAGGAGGACCGAAGGGCCCGTAGCGACAGGCTCCGGCTGTGCCAGTGAACTGGCCGGAAAAGTGGACAGTGAAGGCGCTCAGGCACTGCTCCTCGTGCGGCTCCGCGCCGCCCCAGCTCGGCTCCTGTTTGATGAAGGAGTGAGGCGGCGGCGGCGGGGGTGGCGGCGGAGCCGGTGGCGGCGCGGGGCCGCCCAACGACCCGTAAGCCGAAGCGCCCGGGGGCGCAAAGTCCAGCACCGGCGCCCACTGCGCCGCGCC	-			P-0032669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			0	22	11	0	ENST00000332351.3:c.292_646+376del		p.X98_splice	ENST00000332351	NM_024426.4	98																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153244227	153244227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	41	455	0	ENST00000281708.4:c.1930G>A	p.Gly644Arg	p.G644R	ENST00000281708	NM_033632.3	644	Gga/Aga																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730008	41730008	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	84	680	1	ENST00000242208.4:c.521G>T	p.Arg174Leu	p.R174L	ENST00000242208	NM_002192.2	174	cGc/cTc																																																																															
JUN	3725	MSKCC	GRCh37	1	59247813	59247814	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTTTAAGCTG			P-0032674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1264	72	968	0	ENST00000371222.2:c.919_929dup	p.Gln310HisfsTer8	p.Q310Hfs*8	ENST00000371222	NM_002228.3	310	cag/caCAGCTTAAACAg																																																																															
ATM	472	MSKCC	GRCh37	11	108180949	108180949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	35	347	1	ENST00000278616.4:c.5825C>T	p.Ala1942Val	p.A1942V	ENST00000278616	NM_000051.3	1942	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0032688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	149	632	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0032688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	78	477	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0032688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	100	474	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	54	227	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0032688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	72	333	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720699	89720699	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	21	114	0	ENST00000371953.3:c.850G>T	p.Glu284Ter	p.E284*	ENST00000371953	NM_000314.4	284	Gag/Tag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63531763	63531763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	123	582	0	ENST00000307078.5:c.2218C>T	p.Pro740Ser	p.P740S	ENST00000307078	NM_004655.3	740	Cca/Tca																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268138	153268138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1406877044		P-0032688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	211	337	0	ENST00000281708.4:c.670C>T	p.Arg224Ter	p.R224*	ENST00000281708	NM_033632.3	224	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911625	114911625	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	96	378	0	ENST00000543371.1:c.1143C>G	p.Asn381Lys	p.N381K	ENST00000543371	NM_001198531.1	381	aaC/aaG																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104636	69104636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	157	600	0	ENST00000288368.4:c.4480C>T	p.Arg1494Cys	p.R1494C	ENST00000288368	NM_024870.2	1494	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0032719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	76	299	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0032719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	306	517	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713171	30713171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	167	401	0	ENST00000359013.4:c.571C>T	p.Gln191Ter	p.Q191*	ENST00000359013	NM_001024847.2	191	Caa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29576091	29576091	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	134	520	0	ENST00000358273.4:c.4064C>G	p.Ser1355Ter	p.S1355*	ENST00000358273	NM_001042492.2	1355	tCa/tGa																																																																															
BCL6	604	MSKCC	GRCh37	3	187446249	187446249	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	293	571	0	ENST00000232014.4:c.1439C>G	p.Ser480Cys	p.S480C	ENST00000232014	NM_001130845.1	480	tCt/tGt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458050	120458050	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	233	515	0	ENST00000256646.2:c.7295C>G	p.Ser2432Cys	p.S2432C	ENST00000256646	NM_024408.3	2432	tCt/tGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29576105	29576105	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	125	511	0	ENST00000358273.4:c.4078C>A	p.Gln1360Lys	p.Q1360K	ENST00000358273	NM_001042492.2	1360	Caa/Aaa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58701007	58701007	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	65	541	0	ENST00000305921.3:c.598C>G	p.Gln200Glu	p.Q200E	ENST00000305921	NM_003620.3	200	Cag/Gag																																																																															
AXL	558	MSKCC	GRCh37	19	41754509	41754509	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	240	525	0	ENST00000301178.4:c.1628G>T	p.Gly543Val	p.G543V	ENST00000301178	NM_021913.4	543	gGa/gTa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713217	30713217	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	198	381	0	ENST00000359013.4:c.617C>G	p.Ser206Cys	p.S206C	ENST00000359013	NM_001024847.2	206	tCt/tGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178547	56178550	+	frameshift_variant	Frame_Shift_Del	DEL	AATC	AATC	-			P-0032719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	63	232	0	ENST00000399503.3:c.3522_3525del	p.Asn1174LysfsTer15	p.N1174Kfs*15	ENST00000399503	NM_005921.1	1174	AATCaa/aa																																																																															
NBN	4683	MSKCC	GRCh37	8	90995048	90995048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	74	458	0	ENST00000265433.3:c.73G>A	p.Val25Ile	p.V25I	ENST00000265433	NM_002485.4	25	Gtt/Att																																																																															
JAK2	3717	MSKCC	GRCh37	9	5066725	5066725	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	63	397	0	ENST00000381652.3:c.1262G>C	p.Gly421Ala	p.G421A	ENST00000381652	NM_004972.3	421	gGa/gCa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0032722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	259	373	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348930	11348930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	254	379	0	ENST00000332029.2:c.406C>T	p.His136Tyr	p.H136Y	ENST00000332029	NM_003745.1	136	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	116	608	1	ENST00000269305.4:c.596G>A	p.Gly199Glu	p.G199E	ENST00000269305	NM_001126112.2	199	gGa/gAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	206	449	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	122	631	0	ENST00000269305.4:c.587G>C	p.Arg196Pro	p.R196P	ENST00000269305	NM_001126112.2	196	cGa/cCa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030645	48030645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	160	531	0	ENST00000234420.5:c.3259C>T	p.Pro1087Ser	p.P1087S	ENST00000234420	NM_000179.2	1087	Ccc/Tcc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729958	30729973	+	frameshift_variant	Frame_Shift_Del	DEL	AGATCGAGGGCGACCA	AGATCGAGGGCGACCA	-			P-0032725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	114	367	0	ENST00000359013.4:c.1554_1569del	p.Asp519LysfsTer19	p.D519Kfs*19	ENST00000359013	NM_001024847.2	518	agAGATCGAGGGCGACCA/ag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971205	21971206	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GA	GA	AT			P-0032725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	122	360	0	ENST00000304494.5:c.152_153delinsAT	p.Val51Asp	p.V51D	ENST00000304494	NM_000077.4	51	gTC/gAT																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572556	64572556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	81	468	1	ENST00000337652.1:c.1315G>A	p.Val439Met	p.V439M	ENST00000337652	NM_130803.2	439	Gtg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436390	49436390	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	81	423	0	ENST00000301067.7:c.5821A>G	p.Met1941Val	p.M1941V	ENST00000301067	NM_003482.3	1941	Atg/Gtg																																																																															
CDH1	999	MSKCC	GRCh37	16	68846150	68846171	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTCAATCCCACCACGGTAAT	TCTTCAATCCCACCACGGTAAT	-			P-0032738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	42	485	0	ENST00000261769.5:c.1124_1137+8del		p.X375_splice	ENST00000261769	NM_004360.3	375																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0032754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	79	296	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0032754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	121	509	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	14	392	1	ENST00000288602.6:c.1397G>A	p.Gly466Glu	p.G466E	ENST00000288602	NM_004333.4	466	gGa/gAa																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046356	128046356	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	34	394	0	ENST00000285398.2:c.907A>C	p.Asn303His	p.N303H	ENST00000285398	NM_000122.1	303	Aac/Cac																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660087	227660087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	66	430	0	ENST00000305123.5:c.3368C>A	p.Ala1123Glu	p.A1123E	ENST00000305123	NM_005544.2	1123	gCa/gAa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081573	143081573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	16	455	0	ENST00000262992.4:c.1501C>T	p.Pro501Ser	p.P501S	ENST00000262992	NM_001101669.1	501	Ccc/Tcc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	29	520	4	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121242	29121242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	35	679	0	ENST00000328354.6:c.433C>T	p.Arg145Trp	p.R145W	ENST00000328354	NM_007194.3	145	Cgg/Tgg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482437	56482437	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	26	488	0	ENST00000267101.3:c.985A>G	p.Lys329Glu	p.K329E	ENST00000267101	NM_001982.3	329	Aaa/Gaa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	24	396	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	51	614	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
WT1	7490	MSKCC	GRCh37	11	32421519	32421519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	32	524	0	ENST00000332351.3:c.1073C>T	p.Thr358Met	p.T358M	ENST00000332351	NM_024426.4	358	aCg/aTg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56864491	56864491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	40	547	0	ENST00000308159.5:c.979C>T	p.Arg327Cys	p.R327C	ENST00000308159	NM_014669.4	327	Cgc/Tgc																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2493197	2493197	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145758620		P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	36	579	0	ENST00000355716.4:c.637G>A	p.Val213Ile	p.V213I	ENST00000355716	NM_003820.2	213	Gtc/Atc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538941	187538941	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	29	408	2	ENST00000441802.2:c.8799delA	p.Gly2934ValfsTer3	p.G2934Vfs*3	ENST00000441802	NM_005245.3	2933	caA/ca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907420	32907421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1253401667		P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	16	295	0	ENST00000380152.3:c.1813dup	p.Ile605AsnfsTer11	p.I605Nfs*11	ENST00000380152		602	gga/ggAa																																																																															
LYN	4067	MSKCC	GRCh37	8	56910960	56910960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	46	566	0	ENST00000519728.1:c.1106G>A	p.Arg369Gln	p.R369Q	ENST00000519728	NM_002350.3	369	cGa/cAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29683558	29683558	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	13	295	0	ENST00000358273.4:c.7701del	p.Met2569Ter	p.M2569*	ENST00000358273	NM_001042492.2	2566	Ccc/cc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38272115	38272115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	38	563	0	ENST00000425967.3:c.2103G>T	p.Glu701Asp	p.E701D	ENST00000425967	NM_001174067.1	701	gaG/gaT																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300039	137300040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755912201		P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	44	661	4	ENST00000481739.1:c.331dup	p.Leu111ProfsTer70	p.L111Pfs*70	ENST00000481739	NM_002957.4	108	-/C																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732986	74732986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	26	339	0	ENST00000359995.5:c.257G>T	p.Arg86Leu	p.R86L	ENST00000359995	NM_001195427.1	86	cGg/cTg																																																																															
HRAS	3265	MSKCC	GRCh37	11	533595	533595	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	34	654	0	ENST00000311189.7:c.308T>C	p.Val103Ala	p.V103A	ENST00000311189		103	gTg/gCg																																																																															
MCL1	4170	MSKCC	GRCh37	1	150550901	150550901	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	38	430	0	ENST00000369026.2:c.755A>G	p.His252Arg	p.H252R	ENST00000369026	NM_021960.4	252	cAt/cGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420972	49420972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	25	371	1	ENST00000301067.7:c.14777C>T	p.Ala4926Val	p.A4926V	ENST00000301067	NM_003482.3	4926	gCc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433136	49433136	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	40	594	0	ENST00000301067.7:c.8235G>T	p.Lys2745Asn	p.K2745N	ENST00000301067	NM_003482.3	2745	aaG/aaT																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110108	115110108	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	34	634	0	ENST00000257566.3:c.1771-1G>T		p.X591_splice	ENST00000257566	NM_016569.3	591																																																																																
SETD8	387893	MSKCC	GRCh37	12	123880898	123880898	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	26	329	0	ENST00000330479.4:c.516A>C	p.Gln172His	p.Q172H	ENST00000330479	NM_020382.3	172	caA/caC																																																																															
FLT3	2322	MSKCC	GRCh37	13	28611427	28611427	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	27	344	0	ENST00000241453.7:c.1206-2A>C		p.X402_splice	ENST00000241453	NM_004119.2	402																																																																																
FLT1	2321	MSKCC	GRCh37	13	29008234	29008234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	27	500	0	ENST00000282397.4:c.637G>T	p.Gly213Trp	p.G213W	ENST00000282397	NM_002019.4	213	Ggg/Tgg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066864	30066864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	33	494	0	ENST00000331968.5:c.2267G>T	p.Arg756Met	p.R756M	ENST00000331968	NM_002742.2	756	aGg/aTg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500289	99500289	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	37	512	0	ENST00000268035.6:c.3723-1G>T		p.X1241_splice	ENST00000268035	NM_000875.3	1241																																																																																
NUP93	9688	MSKCC	GRCh37	16	56870512	56870512	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	17	328	0	ENST00000308159.5:c.1783-1G>T		p.X595_splice	ENST00000308159	NM_014669.4	595																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37863243	37863243	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	60	478	0	ENST00000269571.5:c.74T>C	p.Val25Ala	p.V25A	ENST00000269571		25	gTg/gCg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271478	15271478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	48	865	0	ENST00000263388.2:c.6961G>A	p.Ala2321Thr	p.A2321T	ENST00000263388	NM_000435.2	2321	Gcc/Acc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290259	15290259	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	44	749	0	ENST00000263388.2:c.3376T>C	p.Cys1126Arg	p.C1126R	ENST00000263388	NM_000435.2	1126	Tgt/Cgt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367884	15367884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	42	645	1	ENST00000263377.2:c.1442C>T	p.Ala481Val	p.A481V	ENST00000263377	NM_058243.2	481	gCc/gTc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902121	50902121	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs9282830		P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	23	420	1	ENST00000440232.2:c.13C>T	p.Arg5Trp	p.R5W	ENST00000440232	NM_002691.3	5	Cgg/Tgg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48028154	48028154	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	20	352	0	ENST00000234420.5:c.3032T>C	p.Ile1011Thr	p.I1011T	ENST00000234420	NM_000179.2	1011	aTt/aCt																																																																															
CASP8	841	MSKCC	GRCh37	2	202149925	202149925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	36	591	1	ENST00000358485.4:c.1366G>T	p.Ala456Ser	p.A456S	ENST00000358485	NM_001080125.1	456	Gct/Tct																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40911130	40911130	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	20	378	0	ENST00000373198.4:c.2175del	p.Ala726HisfsTer8	p.A726Hfs*8	ENST00000373198	NM_133170.3	725	aaA/aa																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62324324	62324324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	36	602	0	ENST00000508582.2:c.2891C>A	p.Ala964Asp	p.A964D	ENST00000508582		964	gCt/gAt																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656816	45656816	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	28	482	0	ENST00000407780.3:c.340C>A	p.Leu114Met	p.L114M	ENST00000407780	NM_001283052.1	114	Ctg/Atg																																																																															
EP300	2033	MSKCC	GRCh37	22	41513293	41513293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	31	519	1	ENST00000263253.7:c.197C>T	p.Thr66Ile	p.T66I	ENST00000263253	NM_001429.3	66	aCa/aTa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185190790	185190790	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	36	547	0	ENST00000265026.3:c.1674del	p.Thr559ProfsTer48	p.T559Pfs*48	ENST00000265026	NM_004721.4	557	atC/at																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55151555	55151555	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	28	494	0	ENST00000257290.5:c.2341C>A	p.Leu781Ile	p.L781I	ENST00000257290	NM_006206.4	781	Ctc/Atc																																																																															
TET2	54790	MSKCC	GRCh37	4	106158352	106158352	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	19	304	0	ENST00000380013.4:c.3253A>G	p.Thr1085Ala	p.T1085A	ENST00000380013	NM_001127208.2	1085	Aca/Gca																																																																															
TERT	7015	MSKCC	GRCh37	5	1278878	1278878	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	38	574	0	ENST00000310581.5:c.2164del	p.Gln722ArgfsTer45	p.Q722Rfs*45	ENST00000310581	NM_198253.2	722	Cag/ag																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754226	57754226	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	29	369	0	ENST00000274289.3:c.625G>T	p.Gly209Trp	p.G209W	ENST00000274289	NM_006622.3	209	Ggg/Tgg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67590490	67590490	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	15	174	0	ENST00000274335.5:c.1552G>T	p.Glu518Ter	p.E518*	ENST00000274335		518	Gag/Tag																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449570	149449570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	44	587	0	ENST00000286301.3:c.1376G>T	p.Ser459Ile	p.S459I	ENST00000286301	NM_005211.3	459	aGc/aTc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265394	152265394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	29	385	1	ENST00000206249.3:c.847G>A	p.Ala283Thr	p.A283T	ENST00000206249	NM_000125.3	283	Gct/Act																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978318	2978318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	30	506	0	ENST00000396946.4:c.1012G>A	p.Asp338Asn	p.D338N	ENST00000396946	NM_032415.4	338	Gac/Aac																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935668	13935668	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	35	417	0	ENST00000405192.2:c.1188A>C	p.Glu396Asp	p.E396D	ENST00000405192	NM_001163147.1	396	gaA/gaC																																																																															
ETV1	2115	MSKCC	GRCh37	7	13940442	13940442	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	37	392	0	ENST00000405192.2:c.1064A>G	p.Gln355Arg	p.Q355R	ENST00000405192	NM_001163147.1	355	cAg/cGg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148512628	148512628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	19	269	0	ENST00000320356.2:c.1516G>A	p.Ala506Thr	p.A506T	ENST00000320356	NM_004456.4	506	Gca/Aca																																																																															
TEK	7010	MSKCC	GRCh37	9	27180318	27180318	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	29	491	0	ENST00000380036.4:c.982G>T	p.Gly328Ter	p.G328*	ENST00000380036	NM_000459.3	328	Gga/Tga																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300870	137300870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	40	644	1	ENST00000481739.1:c.515G>A	p.Arg172His	p.R172H	ENST00000481739	NM_002957.4	172	cGc/cAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390535	139390535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	46	671	0	ENST00000277541.6:c.7656G>T	p.Glu2552Asp	p.E2552D	ENST00000277541	NM_017617.3	2552	gaG/gaT																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169953136	169953136	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	68	372	0	ENST00000295797.4:c.220G>T	p.Glu74Ter	p.E74*	ENST00000295797	NM_002740.5	74	Gaa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860622	151860622	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	48	499	0	ENST00000262189.6:c.10040A>G	p.Asn3347Ser	p.N3347S	ENST00000262189	NM_170606.2	3347	aAt/aGt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746032	162746032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	81	328	0	ENST00000367921.3:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000367921	NM_006182.2	719	Ggt/Agt																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112915753	112915753	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	38	318	0	ENST00000351677.2:c.1026G>A	p.Trp342Ter	p.W342*	ENST00000351677	NM_002834.3	342	tgG/tgA																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66735644	66735644	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	110	377	1	ENST00000307102.5:c.465del	p.Lys156ArgfsTer11	p.K156Rfs*11	ENST00000307102	NM_002755.3	155	ctG/ct																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900720	3900720	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	33	488	0	ENST00000262367.5:c.376G>T	p.Gly126Ter	p.G126*	ENST00000262367	NM_004380.2	126	Gga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577585	7577600	+	frameshift_variant	Frame_Shift_Del	DEL	GATGGTGGTACAGTCA	GATGGTGGTACAGTCA	-			P-0032814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	32	419	0	ENST00000269305.4:c.681_696del	p.Asp228ThrfsTer14	p.D228Tfs*14	ENST00000269305	NM_001126112.2	227	tcTGACTGTACCACCATC/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	438	408	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0032824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	410	479	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591931	48591931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	179	446	0	ENST00000342988.3:c.1094G>A	p.Gly365Asp	p.G365D	ENST00000342988	NM_005359.5	365	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175951	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	88	176	0	ENST00000257430.4:c.4660G>T	p.Glu1554Ter	p.E1554*	ENST00000257430	NM_000038.5	1554	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	110	305	1	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859658	57859658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	192	401	0	ENST00000228682.2:c.712C>T	p.Arg238Cys	p.R238C	ENST00000228682	NM_005269.2	238	Cgt/Tgt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119941	70119942	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0032824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	266	337	0	ENST00000245479.2:c.944dup	p.Tyr315Ter	p.Y315*	ENST00000245479	NM_000346.3	315	tac/tAac																																																																															
MSH2	4436	MSKCC	GRCh37	2	47707946	47707946	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	216	431	0	ENST00000233146.2:c.2570T>C	p.Ile857Thr	p.I857T	ENST00000233146	NM_000251.2	857	aTt/aCt																																																																															
IDH1	3417	MSKCC	GRCh37	2	209101885	209101885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	96	348	0	ENST00000345146.2:c.1163G>A	p.Arg388His	p.R388H	ENST00000345146	NM_005896.2	388	cGt/cAt																																																																															
KDR	3791	MSKCC	GRCh37	4	55991418	55991418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	118	573	2	ENST00000263923.4:c.43G>A	p.Val15Met	p.V15M	ENST00000263923	NM_002253.2	15	Gtg/Atg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202420	138202420	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	99	562	1	ENST00000237289.4:c.2337C>A	p.Cys779Ter	p.C779*	ENST00000237289	NM_001270507.1	779	tgC/tgA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411622	63411622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	471	639	2	ENST00000330258.3:c.1545del	p.Glu516ArgfsTer25	p.E516Rfs*25	ENST00000330258	NM_152424.3	515	ctT/ct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	257	325	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	346	791	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
RB1	5925	MSKCC	GRCh37	13	48954327	48954328	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	153	333	0	ENST00000267163.4:c.1450_1451del	p.Met484ValfsTer8	p.M484Vfs*8	ENST00000267163	NM_000321.2	483	cAT/c																																																																															
APC	324	MSKCC	GRCh37	5	112178355	112178355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	80	386	0	ENST00000257430.4:c.7064C>T	p.Ser2355Leu	p.S2355L	ENST00000257430	NM_000038.5	2355	tCa/tTa																																																																															
APC	324	MSKCC	GRCh37	5	112173600	112173600	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	61	300	0	ENST00000257430.4:c.2309C>G	p.Ser770Ter	p.S770*	ENST00000257430	NM_000038.5	770	tCa/tGa																																																																															
APC	324	MSKCC	GRCh37	5	112175842	112175842	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	41	236	0	ENST00000257430.4:c.4551G>C	p.Gln1517His	p.Q1517H	ENST00000257430	NM_000038.5	1517	caG/caC																																																																															
APC	324	MSKCC	GRCh37	5	112177323	112177323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	60	309	0	ENST00000257430.4:c.6032C>T	p.Ser2011Leu	p.S2011L	ENST00000257430	NM_000038.5	2011	tCa/tTa																																																																															
APC	324	MSKCC	GRCh37	5	112173275	112173275	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	45	158	0	ENST00000257430.4:c.1984C>G	p.Leu662Val	p.L662V	ENST00000257430	NM_000038.5	662	Cta/Gta																																																																															
APC	324	MSKCC	GRCh37	5	112173642	112173642	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	53	316	0	ENST00000257430.4:c.2351C>G	p.Ser784Cys	p.S784C	ENST00000257430	NM_000038.5	784	tCt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112173836	112173836	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	59	312	0	ENST00000257430.4:c.2545G>C	p.Asp849His	p.D849H	ENST00000257430	NM_000038.5	849	Gat/Cat																																																																															
APC	324	MSKCC	GRCh37	5	112173992	112173992	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	66	291	0	ENST00000257430.4:c.2701C>G	p.Gln901Glu	p.Q901E	ENST00000257430	NM_000038.5	901	Cag/Gag																																																																															
APC	324	MSKCC	GRCh37	5	112174979	112174979	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	59	236	0	ENST00000257430.4:c.3688C>G	p.Gln1230Glu	p.Q1230E	ENST00000257430	NM_000038.5	1230	Cag/Gag																																																																															
APC	324	MSKCC	GRCh37	5	112175502	112175502	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	113	332	0	ENST00000257430.4:c.4211C>G	p.Ser1404Cys	p.S1404C	ENST00000257430	NM_000038.5	1404	tCc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112175537	112175537	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	96	299	0	ENST00000257430.4:c.4246G>C	p.Gly1416Arg	p.G1416R	ENST00000257430	NM_000038.5	1416	Ggc/Cgc																																																																															
APC	324	MSKCC	GRCh37	5	112175878	112175878	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	36	207	0	ENST00000257430.4:c.4587G>C	p.Gln1529His	p.Q1529H	ENST00000257430	NM_000038.5	1529	caG/caC																																																																															
APC	324	MSKCC	GRCh37	5	112175885	112175885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	41	203	0	ENST00000257430.4:c.4594G>A	p.Asp1532Asn	p.D1532N	ENST00000257430	NM_000038.5	1532	Gac/Aac																																																																															
APC	324	MSKCC	GRCh37	5	112176234	112176234	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	107	346	0	ENST00000257430.4:c.4943C>G	p.Pro1648Arg	p.P1648R	ENST00000257430	NM_000038.5	1648	cCt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112176269	112176269	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	67	320	0	ENST00000257430.4:c.4978C>G	p.Leu1660Val	p.L1660V	ENST00000257430	NM_000038.5	1660	Cta/Gta																																																																															
APC	324	MSKCC	GRCh37	5	112176285	112176287	+	frameshift_variant	Frame_Shift_Del	DEL	CTC	CTC	TT			P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	56	295	0	ENST00000257430.4:c.4994_4996delinsTT	p.Pro1665LeufsTer5	p.P1665Lfs*5	ENST00000257430	NM_000038.5	1665	cCTCca/cTTca																																																																															
APC	324	MSKCC	GRCh37	5	112176774	112176774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	49	272	1	ENST00000257430.4:c.5483C>T	p.Pro1828Leu	p.P1828L	ENST00000257430	NM_000038.5	1828	cCa/cTa																																																																															
APC	324	MSKCC	GRCh37	5	112178385	112178385	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	71	363	0	ENST00000257430.4:c.7094C>G	p.Ser2365Ter	p.S2365*	ENST00000257430	NM_000038.5	2365	tCa/tGa																																																																															
APC	324	MSKCC	GRCh37	5	112178562	112178562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	55	264	0	ENST00000257430.4:c.7271C>T	p.Ser2424Leu	p.S2424L	ENST00000257430	NM_000038.5	2424	tCa/tTa																																																																															
APC	324	MSKCC	GRCh37	5	112178633	112178633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	57	332	0	ENST00000257430.4:c.7342C>T	p.Pro2448Ser	p.P2448S	ENST00000257430	NM_000038.5	2448	Cca/Tca																																																																															
APC	324	MSKCC	GRCh37	5	112178753	112178753	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	120	436	0	ENST00000257430.4:c.7462C>G	p.Leu2488Val	p.L2488V	ENST00000257430	NM_000038.5	2488	Ctt/Gtt																																																																															
APC	324	MSKCC	GRCh37	5	112179591	112179591	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	102	333	0	ENST00000257430.4:c.8300C>G	p.Ser2767Ter	p.S2767*	ENST00000257430	NM_000038.5	2767	tCa/tGa																																																																															
ATRX	546	MSKCC	GRCh37	X	76907702	76907702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	83	569	0	ENST00000373344.5:c.4459G>A	p.Asp1487Asn	p.D1487N	ENST00000373344	NM_000489.3	1487	Gat/Aat																																																																															
ATM	472	MSKCC	GRCh37	11	108198455	108198455	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	19	409	0	ENST00000278616.4:c.7059del	p.Ala2354ArgfsTer8	p.A2354Rfs*8	ENST00000278616	NM_000051.3	2353	ccT/cc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923438	9923438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	35	619	0	ENST00000330684.3:c.1849G>A	p.Val617Met	p.V617M	ENST00000330684	NM_001134407.1	617	Gtg/Atg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0032851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	115	553	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	66	497	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0032851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	96	492	2	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028638	12028638	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	69	413	1	ENST00000353533.5:c.841C>T	p.Arg281Ter	p.R281*	ENST00000353533	NM_003010.3	281	Cga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120639	115120639	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	120	677	0	ENST00000257566.3:c.367A>G	p.Met123Val	p.M123V	ENST00000257566	NM_016569.3	123	Atg/Gtg																																																																															
APC	324	MSKCC	GRCh37	5	112173672	112173690	+	frameshift_variant	Frame_Shift_Del	DEL	GTCTCTATGGTGATTATGT	GTCTCTATGGTGATTATGT	-			P-0032851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	42	363	0	ENST00000257430.4:c.2381_2399del	p.Ser794IlefsTer20	p.S794Ifs*20	ENST00000257430	NM_000038.5	794	aGTCTCTATGGTGATTATGTt/at																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662481	227662481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	62	484	0	ENST00000305123.5:c.974G>A	p.Arg325His	p.R325H	ENST00000305123	NM_005544.2	325	cGt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	67	382	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175419	112175420	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	44	345	0	ENST00000257430.4:c.4129_4130del	p.Val1377SerfsTer8	p.V1377Sfs*8	ENST00000257430	NM_000038.5	1376	taTGtt/tatt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786204041		P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	176	630	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609957	81609957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	27	379	0	ENST00000298171.2:c.1555C>T	p.Arg519Cys	p.R519C	ENST00000298171	NM_000369.2	519	Cgc/Tgc																																																																															
IL10	3586	MSKCC	GRCh37	1	206945777	206945777	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	38	553	0	ENST00000423557.1:c.4C>G	p.His2Asp	p.H2D	ENST00000423557	NM_000572.2	2	Cac/Gac																																																																															
RET	5979	MSKCC	GRCh37	10	43615533	43615533	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	57	512	0	ENST00000355710.3:c.2612T>C	p.Val871Ala	p.V871A	ENST00000355710	NM_020975.4	871	gTt/gCt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440097	49440097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	54	691	1	ENST00000301067.7:c.4529G>A	p.Cys1510Tyr	p.C1510Y	ENST00000301067	NM_003482.3	1510	tGt/tAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911298	32911301	+	frameshift_variant	Frame_Shift_Del	DEL	AAAC	AAAC	-			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	90	528	0	ENST00000380152.3:c.2808_2811delACAA	p.Ala938ProfsTer21	p.A938Pfs*21	ENST00000380152		936	AAACaa/aa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251886	153251891	+	stop_gained,inframe_deletion,splice_region_variant	Nonsense_Mutation	DEL	TAGGAG	TAGGAG	-			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	122	518	0	ENST00000281708.4:c.1115_1120del	p.Ser372_Lys374delinsTer	p.S372_K374delins*	ENST00000281708	NM_033632.3	372	tCTCCTAag/tag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562922	176562922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	83	504	0	ENST00000439151.2:c.818C>T	p.Ser273Leu	p.S273L	ENST00000439151	NM_022455.4	273	tCa/tTa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372544	55372544	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	209	780	0	ENST00000297316.4:c.1234C>G	p.Pro412Ala	p.P412A	ENST00000297316	NM_022454.3	412	Cct/Gct																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8517908	8517918	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCCAGGACT	AAGCCAGGACT	-			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	76	396	0	ENST00000356435.5:c.1473_1483del	p.Lys491AsnfsTer12	p.K491Nfs*12	ENST00000356435		491	aaAGTCCTGGCTTtt/aatt																																																																															
ATRX	546	MSKCC	GRCh37	X	76889133	76889133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	43	436	1	ENST00000373344.5:c.4877G>A	p.Cys1626Tyr	p.C1626Y	ENST00000373344	NM_000489.3	1626	tGt/tAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	249	401	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0032860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	175	553	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0032860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	102	291	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0032860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	111	341	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604773	48604773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	56	327	0	ENST00000342988.3:c.1595C>A	p.Ala532Asp	p.A532D	ENST00000342988	NM_005359.5	532	gCc/gAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5243975	5243975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	234	525	2	ENST00000357368.4:c.1507G>A	p.Ala503Thr	p.A503T	ENST00000357368	NM_002850.3	503	Gcc/Acc																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839930	27839930	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	85	638	0	ENST00000328488.2:c.164A>G	p.Tyr55Cys	p.Y55C	ENST00000328488	NM_003533.2	55	tAc/tGc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188866	32188866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	88	568	0	ENST00000375023.3:c.688C>T	p.Arg230Cys	p.R230C	ENST00000375023	NM_004557.3	230	Cgt/Tgt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	219	331	0	ENST00000346208.3:c.878T>G	p.Met293Arg	p.M293R	ENST00000346208		293	aTg/aGg																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518634	204518634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	52	224	0	ENST00000367182.3:c.1297C>A	p.Leu433Ile	p.L433I	ENST00000367182	NM_001278516.1	433	Ctc/Atc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060817	38060818	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	290	479	0	ENST00000250448.2:c.1171dup	p.Asp391GlyfsTer24	p.D391Gfs*24	ENST00000250448	NM_004496.3	391	gac/gGac																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214573	5214573	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	230	385	0	ENST00000357368.4:c.4493G>A	p.Arg1498Gln	p.R1498Q	ENST00000357368	NM_002850.3	1498	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0032890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	191	440	2	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																															
RB1	5925	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0032890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	44	228	1	ENST00000267163.4:c.1215+1G>T		p.X405_splice	ENST00000267163	NM_000321.2	405																																																																																
BRCA1	672	MSKCC	GRCh37	17	41226539	41226539	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0032890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	83	262	2	ENST00000357654.3:c.4485-1G>T		p.X1495_splice	ENST00000357654	NM_007294.3	1495																																																																																
BIRC3	330	MSKCC	GRCh37	11	102207658	102207658	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	53	287	2	ENST00000263464.3:c.1640A>G	p.Gln547Arg	p.Q547R	ENST00000263464	NM_001165.4	547	cAa/cGa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287250	46287250	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	58	350	1	ENST00000334344.6:c.5195C>G	p.Ala1732Gly	p.A1732G	ENST00000334344	NM_152641.2	1732	gCc/gGc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396504	30396504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	276	255	4	ENST00000331968.5:c.215A>G	p.Tyr72Cys	p.Y72C	ENST00000331968	NM_002742.2	72	tAc/tGc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680676	88680676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	165	417	2	ENST00000360948.2:c.581G>A	p.Gly194Asp	p.G194D	ENST00000360948	NM_001012338.2	194	gGc/gAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350276	89350276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	135	603	0	ENST00000301030.4:c.2674A>T	p.Ser892Cys	p.S892C	ENST00000301030	NM_001256183.1	892	Agc/Tgc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295690	212295690	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	125	361	3	ENST00000342788.4:c.2623T>A	p.Tyr875Asn	p.Y875N	ENST00000342788	NM_005235.2	875	Tac/Aac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426718	212426718	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	127	387	3	ENST00000342788.4:c.2397G>T	p.Met799Ile	p.M799I	ENST00000342788	NM_005235.2	799	atG/atT																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659783	227659783	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	120	341	2	ENST00000305123.5:c.3672G>T	p.Glu1224Asp	p.E1224D	ENST00000305123	NM_005544.2	1224	gaG/gaT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40747048	40747048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	143	404	0	ENST00000373198.4:c.3034G>A	p.Gly1012Ser	p.G1012S	ENST00000373198	NM_133170.3	1012	Ggc/Agc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12641241	12641241	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	78	337	0	ENST00000251849.4:c.1057A>G	p.Thr353Ala	p.T353A	ENST00000251849	NM_002880.3	353	Act/Gct																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670372	134670372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	169	314	3	ENST00000398015.3:c.283G>A	p.Asp95Asn	p.D95N	ENST00000398015	NM_004441.4	95	Gac/Aac																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969968	161969968	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	136	331	1	ENST00000366898.1:c.1001del	p.Arg334ProfsTer101	p.R334Pfs*101	ENST00000366898	NM_004562.2	334	cGc/cc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55229216	55229216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	92	263	6	ENST00000275493.2:c.1523C>T	p.Ala508Val	p.A508V	ENST00000275493	NM_005228.3	508	gCc/gTc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938408	44938408	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	72	172	0	ENST00000377967.4:c.2956A>G	p.Thr986Ala	p.T986A	ENST00000377967	NM_021140.2	986	Act/Gct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	373	397	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247280	153247280	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	190	262	0	ENST00000281708.4:c.1522C>T	p.Gln508Ter	p.Q508*	ENST00000281708	NM_033632.3	508	Caa/Taa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257459	16257459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	106	342	0	ENST00000375759.3:c.4724C>A	p.Ser1575Tyr	p.S1575Y	ENST00000375759	NM_015001.2	1575	tCc/tAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111490	8111490	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	298	383	0	ENST00000346208.3:c.976A>G	p.Thr326Ala	p.T326A	ENST00000346208		326	Aca/Gca																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679838	88679838	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	162	275	0	ENST00000360948.2:c.625C>A	p.Leu209Ile	p.L209I	ENST00000360948	NM_001012338.2	209	Ctt/Att																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857044	9857044	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201707833		P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	65	239	0	ENST00000330684.3:c.4357G>T	p.Val1453Leu	p.V1453L	ENST00000330684	NM_001134407.1	1453	Gtg/Ttg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760778	59760778	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs112214651		P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	111	505	0	ENST00000259008.2:c.3629A>G	p.Asp1210Gly	p.D1210G	ENST00000259008	NM_032043.2	1210	gAt/gGt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211188	2211188	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	402	490	0	ENST00000398665.3:c.1442C>A	p.Pro481Gln	p.P481Q	ENST00000398665	NM_032482.2	481	cCg/cAg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17948775	17948775	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	458	552	0	ENST00000458235.1:c.1667A>G	p.Lys556Arg	p.K556R	ENST00000458235	NM_000215.3	556	aAg/aGg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42860357	42860357	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	359	394	0	ENST00000398585.3:c.520T>A	p.Ser174Thr	p.S174T	ENST00000398585	NM_001135099.1	174	Tca/Aca																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89462353	89462353	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	66	402	0	ENST00000336596.2:c.1825G>C	p.Val609Leu	p.V609L	ENST00000336596	NM_005233.5	609	Gtt/Ctt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100000	157100008	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGA	GGCGGCGGA	-			P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	39	49	1	ENST00000346085.5:c.939_947del	p.Gly317_Gly319del	p.G317_G319del	ENST00000346085	NM_020732.3	313	GGCGGCGGA/-																																																																															
RAC1	5879	MSKCC	GRCh37	7	6431629	6431631	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	48	243	0	ENST00000356142.4:c.186_188del	p.Glu62del	p.E62del	ENST00000356142	NM_018890.3	61	cAAGaa/caa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376087	8376087	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	153	207	0	ENST00000356435.5:c.4510G>C	p.Gly1504Arg	p.G1504R	ENST00000356435		1504	Ggt/Cgt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562850	21562850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	471	405	0	ENST00000382592.4:c.1069G>A	p.Val357Met	p.V357M	ENST00000382592	NM_014572.2	357	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0032934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	205	514	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ATM	472	MSKCC	GRCh37	11	108121561	108121561	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	96	515	0	ENST00000278616.4:c.1369C>T	p.Arg457Ter	p.R457*	ENST00000278616	NM_000051.3	457	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108121466	108121467	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	128	392	0	ENST00000278616.4:c.1276dup	p.Ser426LysfsTer4	p.S426Kfs*4	ENST00000278616	NM_000051.3	425	gca/gcAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447099	49447099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	127	470	0	ENST00000301067.7:c.845C>T	p.Pro282Leu	p.P282L	ENST00000301067	NM_003482.3	282	cCt/cTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098369	47098369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	124	563	0	ENST00000409792.3:c.6905G>T	p.Cys2302Phe	p.C2302F	ENST00000409792	NM_014159.6	2302	tGt/tTt																																																																															
APC	324	MSKCC	GRCh37	5	112175319	112175320	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	157	268	0	ENST00000257430.4:c.4030dup	p.Ser1344PhefsTer10	p.S1344Ffs*10	ENST00000257430	NM_000038.5	1343	tct/tcTt																																																																															
TEK	7010	MSKCC	GRCh37	9	27205020	27205020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	46	559	0	ENST00000380036.4:c.2321G>A	p.Arg774Lys	p.R774K	ENST00000380036	NM_000459.3	774	aGg/aAg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520027	106520027	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370034420		P-0032961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	95	252	1	ENST00000359195.3:c.2455G>A	p.Asp819Asn	p.D819N	ENST00000359195	NM_002649.2	819	Gat/Aat																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120247	70120247	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	614	611	0	ENST00000245479.2:c.1249C>T	p.Gln417Ter	p.Q417*	ENST00000245479	NM_000346.3	417	Cag/Tag																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431969	121431969	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	177	490	0	ENST00000257555.6:c.716C>T	p.Ala239Val	p.A239V	ENST00000257555		239	gCg/gTg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49932705	49932705	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	262	607	0	ENST00000296474.3:c.3166T>G	p.Ser1056Ala	p.S1056A	ENST00000296474	NM_002447.2	1056	Tcc/Gcc																																																																															
APC	324	MSKCC	GRCh37	5	112174183	112174183	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	95	313	0	ENST00000257430.4:c.2894del	p.Asn965IlefsTer15	p.N965Ifs*15	ENST00000257430	NM_000038.5	964	ttA/tt																																																																															
ATR	545	MSKCC	GRCh37	3	142178199	142178199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033018-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			184	79	270	0	ENST00000350721.4:c.7219C>T	p.Arg2407Cys	p.R2407C	ENST00000350721	NM_001184.3	2407	Cgc/Tgc																																																																															
YES1	7525	MSKCC	GRCh37	18	732848	732848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033018-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			219	39	572	1	ENST00000314574.4:c.1409G>A	p.Arg470Gln	p.R470Q	ENST00000314574	NM_005433.3	470	cGa/cAa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748093	43748093	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033018-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			186	73	408	0	ENST00000382044.4:c.2713A>G	p.Ser905Gly	p.S905G	ENST00000382044	NM_001141980.1	905	Agt/Ggt																																																																															
NBN	4683	MSKCC	GRCh37	8	90993094	90993094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033018-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			485	32	317	0	ENST00000265433.3:c.348C>G	p.Cys116Trp	p.C116W	ENST00000265433	NM_002485.4	116	tgC/tgG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	75	460	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	190	311	0	ENST00000397062.3:c.92G>C	p.Gly31Ala	p.G31A	ENST00000397062	NM_006164.4	31	gGa/gCa																																																																															
TET2	54790	MSKCC	GRCh37	4	106164916	106164916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	44	343	0	ENST00000380013.4:c.3784C>T	p.Arg1262Trp	p.R1262W	ENST00000380013	NM_001127208.2	1262	Cgg/Tgg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010455	48010455	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	55	315	0	ENST00000234420.5:c.83C>A	p.Ser28Ter	p.S28*	ENST00000234420	NM_000179.2	28	tCa/tAa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004574	16004574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	47	394	1	ENST00000268712.3:c.2680G>A	p.Glu894Lys	p.E894K	ENST00000268712	NM_006311.3	894	Gag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877084	151877084	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	45	467	0	ENST00000262189.6:c.7277A>G	p.Glu2426Gly	p.E2426G	ENST00000262189	NM_170606.2	2426	gAg/gGg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257690	16257690	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	105	433	0	ENST00000375759.3:c.4955C>G	p.Ser1652Ter	p.S1652*	ENST00000375759	NM_015001.2	1652	tCa/tGa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36941233	36941233	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	133	596	0	ENST00000361632.4:c.106G>T	p.Val36Phe	p.V36F	ENST00000361632		36	Gtc/Ttc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246498772	246498772	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	64	463	0	ENST00000388985.4:c.233A>T	p.Lys78Ile	p.K78I	ENST00000388985		78	aAa/aTa																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200084	67200084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	61	497	0	ENST00000312629.5:c.471C>A	p.Phe157Leu	p.F157L	ENST00000312629	NM_003952.2	157	ttC/ttA																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631131	69631131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	113	602	0	ENST00000334134.2:c.281G>T	p.Gly94Val	p.G94V	ENST00000334134	NM_005247.2	94	gGg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579461	7579462	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	112	621	1	ENST00000269305.4:c.225dup	p.Ala76CysfsTer73	p.A76Cfs*73	ENST00000269305	NM_001126112.2	75	-/T																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626850	14626850	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	85	691	0	ENST00000254322.2:c.925G>C	p.Glu309Gln	p.E309Q	ENST00000254322	NM_006145.1	309	Gag/Cag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15297919	15297919	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	444	606	1	ENST00000263388.2:c.1837A>T	p.Thr613Ser	p.T613S	ENST00000263388	NM_000435.2	613	Aca/Tca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299079	15299079	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	76	545	0	ENST00000263388.2:c.1459C>G	p.Arg487Gly	p.R487G	ENST00000263388	NM_000435.2	487	Cga/Gga																																																																															
JAK3	3718	MSKCC	GRCh37	19	17952229	17952229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	62	623	0	ENST00000458235.1:c.1111G>A	p.Glu371Lys	p.E371K	ENST00000458235	NM_000215.3	371	Gaa/Aaa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25466819	25466819	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	61	536	0	ENST00000264709.3:c.1884del	p.Glu629ArgfsTer22	p.E629Rfs*22	ENST00000264709	NM_175629.2	628	gcT/gc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056417	180056417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	41	437	0	ENST00000261937.6:c.827G>T	p.Gly276Val	p.G276V	ENST00000261937	NM_182925.4	276	gGt/gTt																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045874	26045874	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	120	425	0	ENST00000540144.1:c.236T>A	p.Phe79Tyr	p.F79Y	ENST00000540144	NM_003531.2	79	tTc/tAc																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271255	26271255	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	112	478	0	ENST00000305910.3:c.358A>G	p.Ile120Val	p.I120V	ENST00000305910	NM_003534.2	120	Atc/Gtc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188304	32188304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	132	688	1	ENST00000375023.3:c.1037G>T	p.Gly346Val	p.G346V	ENST00000375023	NM_004557.3	346	gGc/gTc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555194	106555194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	48	449	0	ENST00000369096.4:c.2311G>T	p.Gly771Cys	p.G771C	ENST00000369096	NM_001198.3	771	Ggc/Tgc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962373	2962373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	155	648	0	ENST00000396946.4:c.2164G>A	p.Glu722Lys	p.E722K	ENST00000396946	NM_032415.4	722	Gag/Aag																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455101	50455101	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	117	282	0	ENST00000331340.3:c.648A>T	p.Leu216Phe	p.L216F	ENST00000331340	NM_006060.4	216	ttA/ttT																																																																															
HGF	3082	MSKCC	GRCh37	7	81332052	81332052	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	35	260	1	ENST00000222390.5:c.2032G>T	p.Val678Phe	p.V678F	ENST00000222390	NM_000601.4	678	Gtt/Ttt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859492	151859492	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	64	501	0	ENST00000262189.6:c.11170G>C	p.Glu3724Gln	p.E3724Q	ENST00000262189	NM_170606.2	3724	Gag/Cag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945357	151945357	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	42	217	0	ENST00000262189.6:c.2162A>T	p.Gln721Leu	p.Q721L	ENST00000262189	NM_170606.2	721	cAa/cTa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117870603	117870603	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	118	314	0	ENST00000297338.2:c.469G>C	p.Glu157Gln	p.E157Q	ENST00000297338	NM_006265.2	157	Gaa/Caa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285787	87285787	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	135	588	0	ENST00000277120.3:c.124C>G	p.Arg42Gly	p.R42G	ENST00000277120		42	Cgg/Ggg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931926	39931926	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	148	675	0	ENST00000378444.4:c.2673C>A	p.Asn891Lys	p.N891K	ENST00000378444	NM_001123385.1	891	aaC/aaA																																																																															
STAG2	10735	MSKCC	GRCh37	X	123224583	123224583	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	111	486	1	ENST00000218089.9:c.3436A>T	p.Thr1146Ser	p.T1146S	ENST00000218089	NM_001042749.1	1146	Act/Tct																																																																															
STAG2	10735	MSKCC	GRCh37	X	123224762	123224762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	114	556	0	ENST00000218089.9:c.3526G>A	p.Glu1176Lys	p.E1176K	ENST00000218089	NM_001042749.1	1176	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	360	663	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907047	101907047	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0033038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	80	382	0	ENST00000374994.4:c.1007C>G	p.Ser336Ter	p.S336*	ENST00000374994	NM_004612.2	336	tCa/tGa																																																																															
RET	5979	MSKCC	GRCh37	10	43614987	43614987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	76	582	0	ENST00000355710.3:c.2401C>T	p.Leu801Phe	p.L801F	ENST00000355710	NM_020975.4	801	Ctc/Ttc																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117695760	117695760	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	122	488	0	ENST00000369458.3:c.677T>C	p.Met226Thr	p.M226T	ENST00000369458	NM_024626.3	226	aTg/aCg																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166100	118166100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	26	407	0	ENST00000369448.3:c.610G>C	p.Glu204Gln	p.E204Q	ENST00000369448	NM_017709.3	204	Gag/Cag																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206658640	206658640	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	36	464	0	ENST00000367120.3:c.1613G>C	p.Arg538Thr	p.R538T	ENST00000367120	NM_014002.3	538	aGa/aCa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426790	121426790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	123	524	1	ENST00000257555.6:c.481G>T	p.Ala161Ser	p.A161S	ENST00000257555		161	Gcc/Tcc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781797	3781797	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	129	528	0	ENST00000262367.5:c.4870A>G	p.Thr1624Ala	p.T1624A	ENST00000262367	NM_004380.2	1624	Acc/Gcc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81892744	81892744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	116	456	1	ENST00000359376.3:c.455C>T	p.Ser152Phe	p.S152F	ENST00000359376	NM_002661.3	152	tCt/tTt																																																																															
LYN	4067	MSKCC	GRCh37	8	56912085	56912085	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	102	662	0	ENST00000519728.1:c.1313C>A	p.Thr438Asn	p.T438N	ENST00000519728	NM_002350.3	438	aCc/aAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	77	512	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0033041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	73	717	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140501279	140501279	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	19	393	0	ENST00000288602.6:c.793G>C	p.Gly265Arg	p.G265R	ENST00000288602	NM_004333.4	265	Ggt/Cgt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343512	343512	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	46	786	0	ENST00000262320.3:c.2162C>G	p.Ala721Gly	p.A721G	ENST00000262320	NM_003502.3	721	gCc/gGc																																																																															
APC	324	MSKCC	GRCh37	5	112174337	112174337	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	17	284	0	ENST00000257430.4:c.3046G>C	p.Asp1016His	p.D1016H	ENST00000257430	NM_000038.5	1016	Gat/Cat																																																																															
FLT4	2324	MSKCC	GRCh37	5	180036949	180036949	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	140	522	0	ENST00000261937.6:c.3763T>G	p.Phe1255Val	p.F1255V	ENST00000261937	NM_182925.4	1255	Ttt/Gtt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206661310	206661310	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	113	418	0	ENST00000367120.3:c.1676A>T	p.Lys559Met	p.K559M	ENST00000367120	NM_014002.3	559	aAg/aTg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217003	7217003	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	95	420	0	ENST00000380728.2:c.518G>C	p.Gly173Ala	p.G173A	ENST00000380728		173	gGg/gCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578261	7578262	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGA			P-0033055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	271	507	0	ENST00000269305.4:c.584_587dup	p.Val197ProfsTer13	p.V197Pfs*13	ENST00000269305	NM_001126112.2	196	cga/cgTCCGa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538298	9538298	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	143	465	0	ENST00000353224.5:c.1700G>C	p.Arg567Thr	p.R567T	ENST00000353224	NM_177990.2	567	aGg/aCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	121	449	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	19	458	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	117	351	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0033060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	95	320	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0033060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	113	333	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625218	69625218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	162	634	0	ENST00000334134.2:c.575G>A	p.Arg192Gln	p.R192Q	ENST00000334134	NM_005247.2	192	cGg/cAg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805351	89805351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149851163		P-0033060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	174	492	0	ENST00000389301.3:c.4199G>A	p.Arg1400His	p.R1400H	ENST00000389301	NM_000135.2	1400	cGt/cAt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95596505	95596505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	62	289	0	ENST00000343455.3:c.463G>A	p.Ala155Thr	p.A155T	ENST00000343455	NM_177438.2	155	Gcc/Acc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0033076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	16	439	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426733	121426736	+	protein_altering_variant	In_Frame_Del	DEL	TCCC	TCCC	G			P-0033076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	176	504	0	ENST00000257555.6:c.424_427delinsG	p.Ser142_His143delinsAsp	p.S142_H143delinsD	ENST00000257555		142	TCCCac/Gac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	293	419	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0033081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	505	671	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228801	36228801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	193	709	0	ENST00000222270.7:c.7700G>A	p.Arg2567His	p.R2567H	ENST00000222270	NM_014727.1	2567	cGt/cAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89335072	89335074	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTG	CTG	-			P-0033081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	115	385	0	ENST00000301030.4:c.7807-3_7807-1del		p.X2603_splice	ENST00000301030	NM_001256183.1	2603																																																																																
YES1	7525	MSKCC	GRCh37	18	732846	732846	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	239	705	0	ENST00000314574.4:c.1411G>C	p.Val471Leu	p.V471L	ENST00000314574	NM_005433.3	471	Gtg/Ctg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189416	56189416	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	251	652	0	ENST00000399503.3:c.4448A>G	p.Asp1483Gly	p.D1483G	ENST00000399503	NM_005921.1	1483	gAt/gGt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528945	157528945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	42	562	1	ENST00000346085.5:c.6670G>A	p.Asp2224Asn	p.D2224N	ENST00000346085	NM_020732.3	2224	Gat/Aat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0033085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	162	472	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	264	709	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574021	7574026	+	inframe_deletion	In_Frame_Del	DEL	CACGCC	CACGCC	-			P-0033085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	139	655	0	ENST00000269305.4:c.1001_1006del	p.Gly334_Arg335del	p.G334_R335del	ENST00000269305	NM_001126112.2	334	gGGCGTGag/gag																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073804	8073804	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	67	423	2	ENST00000377482.5:c.855del	p.Arg286GlufsTer9	p.R286Efs*9	ENST00000377482	NM_018948.3	285	ccC/cc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256640	16256640	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	85	560	0	ENST00000375759.3:c.3905T>C	p.Val1302Ala	p.V1302A	ENST00000375759	NM_015001.2	1302	gTc/gCc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258454	16258454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	98	630	0	ENST00000375759.3:c.5719G>A	p.Val1907Ile	p.V1907I	ENST00000375759	NM_015001.2	1907	Gtc/Atc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	47	284	0	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39305247	39305247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	117	659	1	ENST00000373001.3:c.1178G>A	p.Gly393Asp	p.G393D	ENST00000373001	NM_022157.3	393	gGc/gAc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429978	78429978	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	56	562	0	ENST00000370768.2:c.901del	p.Ile301TyrfsTer22	p.I301Yfs*22	ENST00000370768	NM_003902.3	301	Ata/ta																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851429	156851429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	88	768	0	ENST00000524377.1:c.2386G>A	p.Gly796Ser	p.G796S	ENST00000524377	NM_002529.3	796	Ggc/Agc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	61	305	4	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683247	88683247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	119	685	0	ENST00000372037.3:c.1457G>A	p.Arg486Gln	p.R486Q	ENST00000372037	NM_004329.2	486	cGg/cAg																																																																															
SUFU	51684	MSKCC	GRCh37	10	104359271	104359271	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141359583		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	64	444	2	ENST00000369902.3:c.992G>A	p.Arg331Gln	p.R331Q	ENST00000369902	NM_016169.3	331	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	117	629	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942053	71942053	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	105	754	0	ENST00000298229.2:c.1322delA	p.Asn441ThrfsTer2	p.N441Tfs*2	ENST00000298229	NM_001567.3	439	ccA/cc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344599	118344599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	93	592	1	ENST00000534358.1:c.2725G>T	p.Gly909Cys	p.G909C	ENST00000534358	NM_005933.3	909	Ggt/Tgt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118368739	118368739	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	113	648	0	ENST00000534358.1:c.5753A>G	p.Asp1918Gly	p.D1918G	ENST00000534358	NM_005933.3	1918	gAc/gGc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	63	476	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	72	591	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	26	590	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244077	46244077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	102	626	0	ENST00000334344.6:c.2171C>T	p.Pro724Leu	p.P724L	ENST00000334344	NM_152641.2	724	cCc/cTc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245712	46245712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	79	462	0	ENST00000334344.6:c.3806C>T	p.Pro1269Leu	p.P1269L	ENST00000334344	NM_152641.2	1269	cCg/cTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	130	776	0	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865044	57865044	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	118	803	1	ENST00000228682.2:c.2525del	p.Pro842HisfsTer104	p.P842Hfs*104	ENST00000228682	NM_005269.2	841	Ccc/cc																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233090	69233090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	41	428	0	ENST00000462284.1:c.961delC	p.Leu321PhefsTer52	p.L321Ffs*52	ENST00000462284	NM_002392.5	319	Ccc/cc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434356	121434356	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	110	654	1	ENST00000257555.6:c.1124del	p.Gly375AlafsTer9	p.G375Afs*9	ENST00000257555		374	Ggg/gg																																																																															
POLE	5426	MSKCC	GRCh37	12	133245435	133245435	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	56	649	2	ENST00000320574.5:c.1885delG	p.Ala629ProfsTer8	p.A629Pfs*8	ENST00000320574	NM_006231.2	629	Gcc/cc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477077	67477077	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	69	505	1	ENST00000327367.4:c.884G>T	p.Arg295Leu	p.R295L	ENST00000327367	NM_005902.3	295	cGg/cTg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99482514	99482514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	109	642	2	ENST00000268035.6:c.3382G>A	p.Ala1128Thr	p.A1128T	ENST00000268035	NM_000875.3	1128	Gcc/Acc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2224005	2224005	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	110	858	0	ENST00000326181.6:c.1219A>G	p.Met407Val	p.M407V	ENST00000326181	NM_032271.2	407	Atg/Gtg																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30129042	30129042	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745793573		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	120	671	0	ENST00000263025.4:c.724C>T	p.Arg242Trp	p.R242W	ENST00000263025	NM_002746.2	242	Cgg/Tgg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	76	444	1	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827511	72827511	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	94	808	0	ENST00000268489.5:c.9070del	p.Thr3024GlnfsTer52	p.T3024Qfs*52	ENST00000268489	NM_006885.3	3024	Aca/ca																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	126	488	1	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
NF1	4763	MSKCC	GRCh37	17	29508736	29508736	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	78	619	1	ENST00000358273.4:c.663G>T	p.Trp221Cys	p.W221C	ENST00000358273	NM_001042492.2	221	tgG/tgT																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243835	41243835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	129	757	1	ENST00000357654.3:c.3713C>A	p.Pro1238His	p.P1238H	ENST00000357654	NM_007294.3	1238	cCt/cAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	206	675	10	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	221	720	0	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	102	730	6	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575123	48575123	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	91	492	1	ENST00000342988.3:c.317A>G	p.Lys106Arg	p.K106R	ENST00000342988	NM_005359.5	106	aAa/aGa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	71	449	3	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231610	5231611	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	13	160	0	ENST00000357368.4:c.1865dup	p.Gln623SerfsTer4	p.Q623Sfs*4	ENST00000357368	NM_002850.3	622	cct/ccCt																																																																															
INSR	3643	MSKCC	GRCh37	19	7174729	7174729	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	84	467	0	ENST00000302850.5:c.988C>A	p.Pro330Thr	p.P330T	ENST00000302850	NM_000208.2	330	Cca/Aca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299864	15299864	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	116	797	0	ENST00000263388.2:c.1314del	p.Cys440AlafsTer11	p.C440Afs*11	ENST00000263388	NM_000435.2	438	ggG/gg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17387698	17387698	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199960321		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	83	605	1	ENST00000359435.4:c.766G>A	p.Glu256Lys	p.E256K	ENST00000359435	NM_001033549.1	256	Gag/Aag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214025	36214025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	127	794	0	ENST00000222270.7:c.2851C>T	p.Arg951Cys	p.R951C	ENST00000222270	NM_014727.1	951	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224124	36224124	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	59	691	0	ENST00000222270.7:c.6678delC	p.Thr2227ArgfsTer34	p.T2227Rfs*34	ENST00000222270	NM_014727.1	2225	tCc/tc																																																																															
CIC	23152	MSKCC	GRCh37	19	42799050	42799050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	146	884	1	ENST00000575354.2:c.4534C>T	p.Arg1512Cys	p.R1512C	ENST00000575354	NM_015125.3	1512	Cgt/Tgt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902265	50902265	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	136	852	0	ENST00000440232.2:c.157C>G	p.Gln53Glu	p.Q53E	ENST00000440232	NM_002691.3	53	Cag/Gag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467065	25467065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	110	646	0	ENST00000264709.3:c.1810C>T	p.Arg604Trp	p.R604W	ENST00000264709	NM_175629.2	604	Cgg/Tgg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982440	25982440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	96	534	0	ENST00000435504.4:c.850C>T	p.Arg284Ter	p.R284*	ENST00000435504		284	Cga/Tga																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204732730	204732730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	83	596	3	ENST00000302823.3:c.65G>A	p.Cys22Tyr	p.C22Y	ENST00000302823	NM_005214.4	22	tGc/tAc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793290	242793291	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	78	787	0	ENST00000334409.5:c.786dup	p.Ala263ArgfsTer7	p.A263Rfs*7	ENST00000334409	NM_005018.2	262	-/C																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	103	752	6	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560913	9560913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	85	620	2	ENST00000353224.5:c.869C>T	p.Ser290Leu	p.S290L	ENST00000353224	NM_177990.2	290	tCg/tTg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	93	639	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266927	41266927	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139085081		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	107	569	0	ENST00000349496.5:c.598C>T	p.Arg200Cys	p.R200C	ENST00000349496	NM_001904.3	200	Cgt/Tgt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	107	572	9	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																															
RHOA	387	MSKCC	GRCh37	3	49405962	49405962	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	122	598	0	ENST00000418115.1:c.176A>G	p.Asp59Gly	p.D59G	ENST00000418115	NM_001664.2	59	gAc/gGc																																																																															
MITF	4286	MSKCC	GRCh37	3	70001016	70001016	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	81	502	1	ENST00000352241.4:c.920delA	p.Lys307ArgfsTer6	p.K307Rfs*6	ENST00000352241	NM_198159.2	306	Aaa/aa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413710	138413710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	65	460	3	ENST00000289153.2:c.1810delC	p.Arg604GlyfsTer4	p.R604Gfs*4	ENST00000289153	NM_006219.2	604	Cgg/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	13	770	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919312	178919312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	40	303	0	ENST00000263967.3:c.797C>A	p.Pro266His	p.P266H	ENST00000263967	NM_006218.2	266	cCt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	20	451	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950763	38950763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	43	360	0	ENST00000357387.3:c.3187G>A	p.Asp1063Asn	p.D1063N	ENST00000357387	NM_152756.3	1063	Gat/Aat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177608	56177608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	101	469	0	ENST00000399503.3:c.2581G>T	p.Asp861Tyr	p.D861Y	ENST00000399503	NM_005921.1	861	Gat/Tat																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	139	653	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645099	86645099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	63	464	0	ENST00000274376.6:c.1171C>T	p.Arg391Trp	p.R391W	ENST00000274376	NM_002890.2	391	Cgg/Tgg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131930612	131930612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	51	469	0	ENST00000265335.6:c.1849del	p.Arg617GlufsTer26	p.R617Efs*26	ENST00000265335		615	ctA/ct																																																																															
NSD1	64324	MSKCC	GRCh37	5	176694718	176694718	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	64	448	0	ENST00000439151.2:c.5302A>G	p.Arg1768Gly	p.R1768G	ENST00000439151	NM_022455.4	1768	Agg/Ggg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176700778	176700779	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	65	359	0	ENST00000439151.2:c.5618_5619delTA	p.Ile1873LysfsTer18	p.I1873Kfs*18	ENST00000439151	NM_022455.4	1872	cAT/c																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225789	26225789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	64	381	1	ENST00000360408.1:c.407C>T	p.Ala136Val	p.A136V	ENST00000360408	NM_003532.2	136	gCg/gTg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673037	30673037	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201814179		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	117	774	1	ENST00000376406.3:c.3923G>A	p.Arg1308Gln	p.R1308Q	ENST00000376406	NM_014641.2	1308	cGg/cAg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821533	32821533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	74	701	0	ENST00000354258.4:c.61C>T	p.Pro21Ser	p.P21S	ENST00000354258	NM_000593.5	21	Ccc/Tcc																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43745376	43745376	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	121	685	0	ENST00000523873.1:c.289A>G	p.Thr97Ala	p.T97A	ENST00000523873		97	Act/Gct																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946173	13946173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	120	662	0	ENST00000405192.2:c.923G>A	p.Arg308Gln	p.R308Q	ENST00000405192	NM_001163147.1	308	cGg/cAg																																																																															
MET	4233	MSKCC	GRCh37	7	116340178	116340178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	96	356	0	ENST00000397752.3:c.1040C>T	p.Ala347Val	p.A347V	ENST00000397752	NM_000245.2	347	gCa/gTa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38273432	38273432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	83	888	0	ENST00000425967.3:c.1903G>A	p.Ala635Thr	p.A635T	ENST00000425967	NM_001174067.1	635	Gcc/Acc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054648	5054648	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765286468		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	64	447	0	ENST00000381652.3:c.700C>T	p.Arg234Cys	p.R234C	ENST00000381652	NM_004972.3	234	Cgc/Tgc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933594	39933594	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	84	288	0	ENST00000378444.4:c.1005del	p.Ser336ArgfsTer42	p.S336Rfs*42	ENST00000378444	NM_001123385.1	335	ccC/cc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123181284	123181284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	61	206	0	ENST00000218089.9:c.748G>A	p.Ala250Thr	p.A250T	ENST00000218089	NM_001042749.1	250	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0033101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	169	550	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581229	48581229	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0033101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	156	431	0	ENST00000342988.3:c.533C>G	p.Ser178Ter	p.S178*	ENST00000342988	NM_005359.5	178	tCa/tGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0033101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	143	423	1	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0033101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	177	464	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0033101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	203	304	0	ENST00000257430.4:c.4128T>A	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057955	27057955	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	117	517	1	ENST00000324856.7:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000324856	NM_006015.4	555	Cag/Tag																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480430	50480430	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	149	405	0	ENST00000394963.4:c.392A>G	p.Lys131Arg	p.K131R	ENST00000394963	NM_003076.4	131	aAa/aGa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119775	70119776	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	159	459	0	ENST00000245479.2:c.779dup	p.Glu261ArgfsTer35	p.E261Rfs*35	ENST00000245479	NM_000346.3	259	-/C																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98221944	98221944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	43	494	0	ENST00000331920.6:c.2825G>A	p.Arg942Gln	p.R942Q	ENST00000331920	NM_000264.3	942	cGg/cAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039708	47039708	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	375	603	1	ENST00000329236.7:c.926G>A	p.Arg309Lys	p.R309K	ENST00000329236	NM_001204466.1	309	aGg/aAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114901018	114901020	+	frameshift_variant	Frame_Shift_Del	DEL	CAC	CAC	A			P-0033101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	168	446	1	ENST00000543371.1:c.628_630delinsA	p.His210IlefsTer117	p.H210Ifs*117	ENST00000543371	NM_001198531.1	210	CAC/A																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	170	465	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	187	518	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	76	548	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136799	2136799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	141	758	1	ENST00000219476.3:c.4916G>A	p.Arg1639His	p.R1639H	ENST00000219476	NM_000548.3	1639	cGc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3830754	3830754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	82	445	0	ENST00000262367.5:c.1802G>A	p.Arg601Gln	p.R601Q	ENST00000262367	NM_004380.2	601	cGg/cAg																																																																															
CCND2	894	MSKCC	GRCh37	12	4409146	4409146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	140	366	0	ENST00000261254.3:c.841C>T	p.Pro281Ser	p.P281S	ENST00000261254	NM_001759.3	281	Cct/Tct																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903736	114903736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	71	502	0	ENST00000543371.1:c.740C>T	p.Pro247Leu	p.P247L	ENST00000543371	NM_001198531.1	247	cCt/cTt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117861	70117861	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	125	446	1	ENST00000245479.2:c.329A>G	p.Asn110Ser	p.N110S	ENST00000245479	NM_000346.3	110	aAc/aGc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374931	45374931	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	69	525	0	ENST00000262160.6:c.912C>G	p.Asp304Glu	p.D304E	ENST00000262160	NM_005901.5	304	gaC/gaG																																																																															
ALK	238	MSKCC	GRCh37	2	29448363	29448363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	97	921	0	ENST00000389048.3:c.3136G>A	p.Ala1046Thr	p.A1046T	ENST00000389048	NM_004304.4	1046	Gcc/Acc																																																																															
EP300	2033	MSKCC	GRCh37	22	41568576	41568576	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	88	664	0	ENST00000263253.7:c.4526G>C	p.Trp1509Ser	p.W1509S	ENST00000263253	NM_001429.3	1509	tGg/tCg																																																																															
APC	324	MSKCC	GRCh37	5	112175199	112175199	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	84	243	0	ENST00000257430.4:c.3910del	p.Ile1304Ter	p.I1304*	ENST00000257430	NM_000038.5	1303	cAa/ca																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467831	50467831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	53	390	0	ENST00000331340.3:c.1066G>A	p.Glu356Lys	p.E356K	ENST00000331340	NM_006060.4	356	Gag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877870	151877870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	90	438	0	ENST00000262189.6:c.7075G>A	p.Val2359Met	p.V2359M	ENST00000262189	NM_170606.2	2359	Gtg/Atg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864280	117864283	+	frameshift_variant	Frame_Shift_Del	DEL	GCTG	GCTG	-			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	67	522	0	ENST00000297338.2:c.1374_1377del	p.Ser459GlufsTer4	p.S459Efs*4	ENST00000297338	NM_006265.2	458	gcCAGC/gc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211545	98211545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	74	507	1	ENST00000331920.6:c.3610G>A	p.Val1204Met	p.V1204M	ENST00000331920	NM_000264.3	1204	Gtg/Atg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0033200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	109	446	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112174956	112174956	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	191	202	0	ENST00000257430.4:c.3665C>A	p.Ser1222Ter	p.S1222*	ENST00000257430	NM_000038.5	1222	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579521	7579528	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CAGTGAAC	CAGTGAAC	-			P-0033200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	765	634	0	ENST00000269305.4:c.159_166del	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgGTTCACTGaa/tgaa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437669	52437669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	364	534	1	ENST00000460680.1:c.1492G>A	p.Glu498Lys	p.E498K	ENST00000460680	NM_004656.3	498	Gag/Aag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44941858	44941858	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0033200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	124	176	0	ENST00000377967.4:c.3182C>G	p.Ser1061Ter	p.S1061*	ENST00000377967	NM_021140.2	1061	tCa/tGa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562918	95562918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	179	340	0	ENST00000343455.3:c.4339C>G	p.Gln1447Glu	p.Q1447E	ENST00000343455	NM_177438.2	1447	Cag/Gag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120483325	120483325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	183	317	0	ENST00000256646.2:c.3036G>T	p.Leu1012Phe	p.L1012F	ENST00000256646	NM_024408.3	1012	ttG/ttT																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745597	162745630	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCTAATTCTTCCTCCAGCGATGTACGCACTGT	CCCCTAATTCTTCCTCCAGCGATGTACGCACTGT	-			P-0033200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	125	389	0	ENST00000367921.3:c.2013_2046del	p.Pro672ValfsTer5	p.P672Vfs*5	ENST00000367921	NM_006182.2	671	cCCCCTAATTCTTCCTCCAGCGATGTACGCACTGTc/cc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121437424	121437424	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	235	465	0	ENST00000257555.6:c.1762C>A	p.Pro588Thr	p.P588T	ENST00000257555		588	Ccc/Acc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964094	28964094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	211	507	0	ENST00000282397.4:c.1808G>A	p.Ser603Asn	p.S603N	ENST00000282397	NM_002019.4	603	aGt/aAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29554272	29554272	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	702	468	0	ENST00000358273.4:c.2288T>C	p.Leu763Pro	p.L763P	ENST00000358273	NM_001042492.2	763	cTg/cCg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46583399	46583399	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	251	394	0	ENST00000263734.3:c.327C>G	p.Ile109Met	p.I109M	ENST00000263734	NM_001430.4	109	atC/atG																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182192	99182192	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	207	456	0	ENST00000074304.5:c.2257G>T	p.Ala753Ser	p.A753S	ENST00000074304	NM_001134224.1	753	Gcc/Tcc																																																																															
MITF	4286	MSKCC	GRCh37	3	70008471	70008471	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	172	231	0	ENST00000352241.4:c.1061A>C	p.Tyr354Ser	p.Y354S	ENST00000352241	NM_198159.2	354	tAt/tCt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919155	178919155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	91	238	0	ENST00000263967.3:c.640G>T	p.Asp214Tyr	p.D214Y	ENST00000263967	NM_006218.2	214	Gac/Tac																																																																															
RASA1	5921	MSKCC	GRCh37	5	86674350	86674351	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0033200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	99	312	1	ENST00000274376.6:c.2484_2485del	p.Cys828Ter	p.C828*	ENST00000274376	NM_002890.2	828	TGt/t																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056745	180056745	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	693	634	1	ENST00000261937.6:c.767C>A	p.Ala256Asp	p.A256D	ENST00000261937	NM_182925.4	256	gCt/gAt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001033	150001033	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	107	362	0	ENST00000253339.5:c.2571C>G	p.His857Gln	p.H857Q	ENST00000253339		857	caC/caG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	147	418	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578207	7578215	+	inframe_deletion	In_Frame_Del	DEL	ATGTCGAAA	ATGTCGAAA	-			P-0033201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	210	620	0	ENST00000269305.4:c.634_642del	p.Phe212_His214del	p.F212_H214del	ENST00000269305	NM_001126112.2	212	TTTCGACAT/-																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16097858	16097858	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	142	320	0	ENST00000268712.3:c.26A>G	p.Asn9Ser	p.N9S	ENST00000268712	NM_006311.3	9	aAc/aGc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971175	21971207	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTCCGCCACTCGGGCGCTGCCCATCATCATGAC	CTCCGCCACTCGGGCGCTGCCCATCATCATGAC	-			P-0033201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	91	295	0	ENST00000304494.5:c.151_183del	p.Val51_Glu61del	p.V51_E61del	ENST00000304494	NM_000077.4	51	GTCATGATGATGGGCAGCGCCCGAGTGGCGGAG/-																																																																															
ABL1	25	MSKCC	GRCh37	9	133759366	133759376	+	frameshift_variant	Frame_Shift_Del	DEL	CCATGAGCCTG	CCATGAGCCTG	-			P-0033201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	128	553	0	ENST00000318560.5:c.1691_1701del	p.His564ArgfsTer19	p.H564Rfs*19	ENST00000318560	NM_005157.4	563	gaCCATGAGCCTGcc/gacc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	40	556	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																																																															
CDH1	999	MSKCC	GRCh37	16	68835633	68835643	+	frameshift_variant	Frame_Shift_Del	DEL	TCAAAGTGGGC	TCAAAGTGGGC	-			P-0033220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	45	622	1	ENST00000261769.5:c.224_234del	p.Phe75TyrfsTer15	p.F75Yfs*15	ENST00000261769	NM_004360.3	75	tTCAAAGTGGGC/t																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31376708	31376708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	35	470	0	ENST00000328111.2:c.703G>C	p.Gly235Arg	p.G235R	ENST00000328111	NM_006892.3	235	Ggc/Cgc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938535	44938535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	35	492	0	ENST00000377967.4:c.3083C>T	p.Ser1028Phe	p.S1028F	ENST00000377967	NM_021140.2	1028	tCt/tTt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325846	65325846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	75	315	1	ENST00000342505.4:c.1276G>A	p.Asp426Asn	p.D426N	ENST00000342505	NM_002227.2	426	Gac/Aac																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	67	364	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120459215	120459215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	177	381	1	ENST00000256646.2:c.6130C>T	p.Arg2044Cys	p.R2044C	ENST00000256646	NM_024408.3	2044	Cgt/Tgt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120497699	120497699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	149	303	0	ENST00000256646.2:c.2183C>T	p.Pro728Leu	p.P728L	ENST00000256646	NM_024408.3	728	cCc/cTc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849128	156849128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	225	661	0	ENST00000524377.1:c.2020G>A	p.Asp674Asn	p.D674N	ENST00000524377	NM_002529.3	674	Gat/Aat																																																																															
RET	5979	MSKCC	GRCh37	10	43597801	43597801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	108	501	0	ENST00000355710.3:c.349C>T	p.Pro117Ser	p.P117S	ENST00000355710	NM_020975.4	117	Ccc/Tcc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572587	64572587	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	273	432	0	ENST00000337652.1:c.1284G>A	p.Trp428Ter	p.W428*	ENST00000337652	NM_130803.2	428	tgG/tgA																																																																															
PAK1	5058	MSKCC	GRCh37	11	77043873	77043873	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	224	546	0	ENST00000356341.3:c.1453C>T	p.Gln485Ter	p.Q485*	ENST00000356341	NM_002576.4	485	Cag/Tag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374666	118374666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	162	288	0	ENST00000534358.1:c.8059T>C	p.Phe2687Leu	p.F2687L	ENST00000534358	NM_005933.3	2687	Ttc/Ctc																																																																															
CBL	867	MSKCC	GRCh37	11	119149247	119149247	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	219	419	0	ENST00000264033.4:c.1255T>A	p.Cys419Ser	p.C419S	ENST00000264033	NM_005188.3	419	Tgc/Agc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641487	18641487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	37	318	0	ENST00000266497.5:c.2486C>T	p.Ser829Phe	p.S829F	ENST00000266497		829	tCc/tTc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18747427	18747427	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	78	250	0	ENST00000266497.5:c.3889-1G>A		p.X1297_splice	ENST00000266497		1297																																																																																
ARID2	196528	MSKCC	GRCh37	12	46230405	46230405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	48	323	0	ENST00000334344.6:c.739C>T	p.Arg247Cys	p.R247C	ENST00000334344	NM_152641.2	247	Cgt/Tgt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56491600	56491600	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	201	341	0	ENST00000267101.3:c.2492T>G	p.Val831Gly	p.V831G	ENST00000267101	NM_001982.3	831	gTg/gGg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120621	115120621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	321	524	0	ENST00000257566.3:c.385G>A	p.Gly129Arg	p.G129R	ENST00000257566	NM_016569.3	129	Gga/Aga																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608060	28608060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	164	470	0	ENST00000241453.7:c.1906G>A	p.Gly636Arg	p.G636R	ENST00000241453	NM_004119.2	636	Gga/Aga																																																																															
FLT3	2322	MSKCC	GRCh37	13	28622440	28622440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	122	418	0	ENST00000241453.7:c.1177G>A	p.Glu393Lys	p.E393K	ENST00000241453	NM_004119.2	393	Gag/Aag																																																																															
FLT1	2321	MSKCC	GRCh37	13	28893589	28893589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	120	295	1	ENST00000282397.4:c.3257G>A	p.Gly1086Glu	p.G1086E	ENST00000282397	NM_002019.4	1086	gGa/gAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32918761	32918761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	49	193	0	ENST00000380152.3:c.6908C>T	p.Ser2303Phe	p.S2303F	ENST00000380152		2303	tCc/tTc																																																																															
RB1	5925	MSKCC	GRCh37	13	48951120	48951120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	77	264	0	ENST00000267163.4:c.1282G>A	p.Glu428Lys	p.E428K	ENST00000267163	NM_000321.2	428	Gag/Aag																																																																															
RB1	5925	MSKCC	GRCh37	13	48955563	48955563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	71	234	0	ENST00000267163.4:c.1679C>T	p.Ser560Phe	p.S560F	ENST00000267163	NM_000321.2	560	tCc/tTc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437754	110437755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	190	468	1	ENST00000375856.3:c.646dup	p.Val216GlyfsTer90	p.V216Gfs*90	ENST00000375856	NM_003749.2	216	gtg/gGtg																																																																															
B2M	567	MSKCC	GRCh37	15	45007681	45007681	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	118	309	1	ENST00000558401.1:c.128T>C	p.Leu43Pro	p.L43P	ENST00000558401	NM_004048.2	43	cTg/cCg																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	263	706	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396349	396349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	113	616	1	ENST00000262320.3:c.677C>T	p.Ser226Phe	p.S226F	ENST00000262320	NM_003502.3	226	tCt/tTt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3828063	3828063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	177	432	0	ENST00000262367.5:c.2062C>T	p.Pro688Ser	p.P688S	ENST00000262367	NM_004380.2	688	Ccg/Tcg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900518	3900518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	244	597	2	ENST00000262367.5:c.578C>T	p.Ser193Phe	p.S193F	ENST00000262367	NM_004380.2	193	tCt/tTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858784	9858784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	31	198	0	ENST00000330684.3:c.2617G>A	p.Gly873Arg	p.G873R	ENST00000330684	NM_001134407.1	873	Gga/Aga																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81941310	81941310	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	136	465	0	ENST00000359376.3:c.1488C>G	p.Cys496Trp	p.C496W	ENST00000359376	NM_002661.3	496	tgC/tgG																																																																															
FANCA	2175	MSKCC	GRCh37	16	89831297	89831297	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	77	380	0	ENST00000389301.3:c.2778+1G>A		p.X926_splice	ENST00000389301	NM_000135.2	926																																																																																
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	308	495	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29586051	29586051	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	22	291	0	ENST00000358273.4:c.4334T>G	p.Ile1445Arg	p.I1445R	ENST00000358273	NM_001042492.2	1445	aTa/aGa																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804277	46804277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	106	478	0	ENST00000290295.7:c.730G>A	p.Asp244Asn	p.D244N	ENST00000290295	NM_006361.5	244	Gac/Aac																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532460	63532460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	81	470	0	ENST00000307078.5:c.2119G>T	p.Val707Leu	p.V707L	ENST00000307078	NM_004655.3	707	Gtg/Ttg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573505	48573505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	33	211	0	ENST00000342988.3:c.89G>A	p.Gly30Glu	p.G30E	ENST00000342988	NM_005359.5	30	gGa/gAa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226931	2226931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	114	356	0	ENST00000398665.3:c.4411G>A	p.Gly1471Arg	p.G1471R	ENST00000398665	NM_032482.2	1471	Gga/Aga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15273319	15273319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	239	544	0	ENST00000263388.2:c.5870C>T	p.Ala1957Val	p.A1957V	ENST00000263388	NM_000435.2	1957	gCc/gTc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353986	15353986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	93	138	0	ENST00000263377.2:c.2894C>T	p.Ser965Phe	p.S965F	ENST00000263377	NM_058243.2	965	tCt/tTt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17941028	17941028	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	287	462	0	ENST00000458235.1:c.3097-1G>A		p.X1033_splice	ENST00000458235	NM_000215.3	1033																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36220154	36220154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	193	524	0	ENST00000222270.7:c.4874C>T	p.Ser1625Phe	p.S1625F	ENST00000222270	NM_014727.1	1625	tCc/tTc																																																																															
AXL	558	MSKCC	GRCh37	19	41759589	41759589	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	195	416	0	ENST00000301178.4:c.2012G>C	p.Arg671Pro	p.R671P	ENST00000301178	NM_021913.4	671	cGg/cCg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295786	212295786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	132	407	0	ENST00000342788.4:c.2527G>A	p.Asp843Asn	p.D843N	ENST00000342788	NM_005235.2	843	Gat/Aat																																																																															
INHA	3623	MSKCC	GRCh37	2	220440206	220440206	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	368	584	0	ENST00000243786.2:c.1059G>C	p.Glu353Asp	p.E353D	ENST00000243786	NM_002191.3	353	gaG/gaC																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659979	227659979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	173	402	0	ENST00000305123.5:c.3476C>T	p.Ala1159Val	p.A1159V	ENST00000305123	NM_005544.2	1159	gCc/gTc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561450	9561450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	170	398	0	ENST00000353224.5:c.332G>A	p.Gly111Glu	p.G111E	ENST00000353224	NM_177990.2	111	gGa/gAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730799	40730799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	203	446	0	ENST00000373198.4:c.3736G>A	p.Glu1246Lys	p.E1246K	ENST00000373198	NM_133170.3	1246	Gaa/Aaa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743942	40743942	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868489194		P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	51	422	0	ENST00000373198.4:c.3053G>A	p.Arg1018Gln	p.R1018Q	ENST00000373198	NM_133170.3	1018	cGa/cAa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46256317	46256317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	34	216	0	ENST00000371998.3:c.545C>T	p.Ser182Phe	p.S182F	ENST00000371998		182	tCc/tTc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264737	46264737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	78	257	0	ENST00000371998.3:c.1607C>T	p.Ser536Phe	p.S536F	ENST00000371998		536	tCc/tTc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436635	52436635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	91	463	0	ENST00000460680.1:c.2039C>T	p.Ser680Phe	p.S680F	ENST00000460680	NM_004656.3	680	tCc/tTc																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149238714	149238714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	267	625	0	ENST00000360632.3:c.1081C>T	p.Leu361Phe	p.L361F	ENST00000360632	NM_015472.4	361	Ctt/Ttt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916863	178916863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	78	481	1	ENST00000263967.3:c.250G>A	p.Asp84Asn	p.D84N	ENST00000263967	NM_006218.2	84	Gat/Aat																																																																															
TP63	8626	MSKCC	GRCh37	3	189612140	189612140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	142	436	0	ENST00000264731.3:c.1892G>A	p.Ser631Asn	p.S631N	ENST00000264731	NM_003722.4	631	aGt/aAt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127289	55127289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	73	412	1	ENST00000257290.5:c.77C>T	p.Ser26Leu	p.S26L	ENST00000257290	NM_006206.4	26	tCa/tTa																																																																															
TET2	54790	MSKCC	GRCh37	4	106193721	106193721	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	25	138	0	ENST00000380013.4:c.4183G>A	p.Val1395Ile	p.V1395I	ENST00000380013	NM_001127208.2	1395	Gta/Ata																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539277	187539277	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	54	307	0	ENST00000441802.2:c.8463C>G	p.Asn2821Lys	p.N2821K	ENST00000441802	NM_005245.3	2821	aaC/aaG																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	48	238	0				ENST00000310581	NM_198253.2																																																																																	
IL7R	3575	MSKCC	GRCh37	5	35871312	35871312	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	62	211	0	ENST00000303115.3:c.534G>A	p.Trp178Ter	p.W178*	ENST00000303115	NM_002185.3	178	tgG/tgA																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873675	35873675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	98	249	0	ENST00000303115.3:c.631C>T	p.His211Tyr	p.H211Y	ENST00000303115	NM_002185.3	211	Cac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112116563	112116563	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	64	242	0	ENST00000257430.4:c.609del	p.Gln203HisfsTer2	p.Q203Hfs*2	ENST00000257430	NM_000038.5	203	cAa/ca																																																																															
APC	324	MSKCC	GRCh37	5	112128185	112128185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	81	264	0	ENST00000257430.4:c.688C>T	p.Arg230Cys	p.R230C	ENST00000257430	NM_000038.5	230	Cgt/Tgt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149514520	149514520	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	170	403	0	ENST00000261799.4:c.424A>T	p.Ile142Leu	p.I142L	ENST00000261799	NM_002609.3	142	Ata/Tta																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149514556	149514556	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	136	329	0	ENST00000261799.4:c.388A>G	p.Asn130Asp	p.N130D	ENST00000261799	NM_002609.3	130	Aat/Gat																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520211	176520211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	144	588	0	ENST00000292408.4:c.1130C>T	p.Ser377Phe	p.S377F	ENST00000292408	NM_213647.1	377	tCc/tTc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520497	176520498	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	224	583	1	ENST00000292408.4:c.1342_1343delinsAA	p.Gly448Asn	p.G448N	ENST00000292408	NM_213647.1	448	GGc/AAc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056611	26056611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	76	122	0	ENST00000343677.2:c.46G>A	p.Glu16Lys	p.E16K	ENST00000343677	NM_005319.3	16	Gag/Aag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168678	32168678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	110	483	0	ENST00000375023.3:c.4245G>A	p.Met1415Ile	p.M1415I	ENST00000375023	NM_004557.3	1415	atG/atA																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187552	32187552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	180	418	0	ENST00000375023.3:c.1327C>T	p.Pro443Ser	p.P443S	ENST00000375023	NM_004557.3	443	Cca/Tca																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287233	33287233	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	187	438	0	ENST00000374542.5:c.1864T>C	p.Trp622Arg	p.W622R	ENST00000374542	NM_001141970.1	622	Tgg/Cgg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956682	93956682	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	42	281	0	ENST00000369303.4:c.2554G>T	p.Gly852Cys	p.G852C	ENST00000369303	NM_004440.3	852	Ggt/Tgt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553594	106553594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	72	232	0	ENST00000369096.4:c.1559G>A	p.Gly520Glu	p.G520E	ENST00000369096	NM_001198.3	520	gGa/gAa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864464	162864464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	102	311	0	ENST00000366898.1:c.49G>A	p.Val17Ile	p.V17I	ENST00000366898	NM_004562.2	17	Gtc/Atc																																																																															
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519874		P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	123	466	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444362	50444362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	80	286	0	ENST00000331340.3:c.292G>A	p.Asp98Asn	p.D98N	ENST00000331340	NM_006060.4	98	Gac/Aac																																																																															
MET	4233	MSKCC	GRCh37	7	116409831	116409831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	98	252	0	ENST00000397752.3:c.2716G>A	p.Glu906Lys	p.E906K	ENST00000397752	NM_000245.2	906	Gag/Aag																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38172261	38172261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	54	264	1	ENST00000317025.8:c.2146C>T	p.Pro716Ser	p.P716S	ENST00000317025	NM_023034.1	716	Cct/Tct																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992692	68992692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	39	470	0	ENST00000288368.4:c.1657G>A	p.Glu553Lys	p.E553K	ENST00000288368	NM_024870.2	553	Gaa/Aaa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090902	5090902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	29	95	0	ENST00000381652.3:c.3050C>T	p.Pro1017Leu	p.P1017L	ENST00000381652	NM_004972.3	1017	cCc/cTc																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5549574	5549574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	179	471	0	ENST00000397747.3:c.601G>A	p.Glu201Lys	p.E201K	ENST00000397747	NM_025239.3	201	Gaa/Aaa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484293	8484293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	134	432	0	ENST00000356435.5:c.3239C>T	p.Ser1080Leu	p.S1080L	ENST00000356435		1080	tCa/tTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500886	8500886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	183	426	0	ENST00000356435.5:c.1996C>T	p.Pro666Ser	p.P666S	ENST00000356435		666	Cct/Tct																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521528	8521528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	165	373	0	ENST00000356435.5:c.710G>A	p.Arg237Lys	p.R237K	ENST00000356435		237	aGa/aAa																																																																															
TEK	7010	MSKCC	GRCh37	9	27168576	27168576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	82	443	0	ENST00000380036.4:c.448G>A	p.Glu150Lys	p.E150K	ENST00000380036	NM_000459.3	150	Gaa/Aaa																																																																															
TEK	7010	MSKCC	GRCh37	9	27213548	27213548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	187	408	0	ENST00000380036.4:c.2944G>A	p.Asp982Asn	p.D982N	ENST00000380036	NM_000459.3	982	Gat/Aat																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87482167	87482167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	94	490	1	ENST00000277120.3:c.1454C>T	p.Ser485Phe	p.S485F	ENST00000277120		485	tCc/tTc																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127915924	127915924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	156	424	0	ENST00000373547.4:c.557C>T	p.Pro186Leu	p.P186L	ENST00000373547	NM_002721.4	186	cCt/cTt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137293556	137293556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	242	696	0	ENST00000481739.1:c.107C>T	p.Ser36Phe	p.S36F	ENST00000481739	NM_002957.4	36	tCc/tTc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0033252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	124	408	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0033252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	49	141	0	ENST00000412916.2:c.165+1G>T		p.X55_splice	ENST00000412916		55																																																																																
CDH1	999	MSKCC	GRCh37	16	68772227	68772228	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	142	583	0	ENST00000261769.5:c.77dup	p.Pro27AlafsTer7	p.P27Afs*7	ENST00000261769	NM_004360.3	26	gag/gAag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	13	531	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0033299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	26	666	4	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0033313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	513	290	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0033313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	764	698	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214612	5214612	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139132124		P-0033313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	132	734	1	ENST00000357368.4:c.4454C>T	p.Ala1485Val	p.A1485V	ENST00000357368	NM_002850.3	1485	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	101	422	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
WT1	7490	MSKCC	GRCh37	11	32456555	32456555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	16	24	0	ENST00000332351.3:c.337G>A	p.Ala113Thr	p.A113T	ENST00000332351	NM_024426.4	113	Gct/Act																																																																															
JUN	3725	MSKCC	GRCh37	1	59247865	59247865	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	146	883	0	ENST00000371222.2:c.878A>G	p.Glu293Gly	p.E293G	ENST00000371222	NM_002228.3	293	gAg/gGg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982401	201982402	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0033414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	195	635	0	ENST00000359651.3:c.782_783del	p.Leu261ArgfsTer39	p.L261Rfs*39	ENST00000359651		260	tgTCtc/tgtc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851764	63851764	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	42	519	0	ENST00000279873.7:c.2542C>G	p.Leu848Val	p.L848V	ENST00000279873	NM_032199.2	848	Ctt/Gtt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28903831	28903831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	135	556	0	ENST00000282397.4:c.2628G>T	p.Met876Ile	p.M876I	ENST00000282397	NM_002019.4	876	atG/atT																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675061	40675061	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	115	639	0	ENST00000249776.8:c.25C>A	p.Leu9Met	p.L9M	ENST00000249776	NM_033286.3	9	Ctg/Atg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566819	212566819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	53	318	1	ENST00000342788.4:c.1362C>A	p.Ser454Arg	p.S454R	ENST00000342788	NM_005235.2	454	agC/agA																																																																															
BARD1	580	MSKCC	GRCh37	2	215657156	215657156	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	55	275	0	ENST00000260947.4:c.229G>T	p.Asp77Tyr	p.D77Y	ENST00000260947	NM_000465.2	77	Gac/Tac																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437594	52437600	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGCT	CAGGGCT	-			P-0033414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	109	633	0	ENST00000460680.1:c.1561_1567del	p.Val523ProfsTer46	p.V523Pfs*46	ENST00000460680	NM_004656.3	521	AGCCCTGtc/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0033420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	177	689	1	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016603	12016603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	151	440	0	ENST00000353533.5:c.739G>A	p.Asp247Asn	p.D247N	ENST00000353533	NM_003010.3	247	Gac/Aac																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591118	67591150	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ATCCAGCTGAGAAAGACGAGAGACCAATACTTG	ATCCAGCTGAGAAAGACGAGAGACCAATACTTG	-			P-0033420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	57	284	0	ENST00000274335.5:c.1713_1745del	p.Ile571_Leu581del	p.I571_L581del	ENST00000274335		571	ATCCAGCTGAGAAAGACGAGAGACCAATACTTG/-																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592170	67592170	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0033420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	65	200	1	ENST00000274335.5:c.1985+1G>A		p.X662_splice	ENST00000274335		662																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	36	436	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220717	1220717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0033441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	50	407	0	ENST00000326873.7:c.734+1G>T		p.X245_splice	ENST00000326873	NM_000455.4	245																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602581	10602581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	66	447	0	ENST00000171111.5:c.997G>A	p.Gly333Ser	p.G333S	ENST00000171111	NM_203500.1	333	Ggc/Agc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739114	40739115	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0033441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	37	400	1	ENST00000373198.4:c.3169_3170delinsTT	p.Glu1057Leu	p.E1057L	ENST00000373198	NM_133170.3	1057	GAg/TTg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170011171	170011171	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0033441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	47	446	0	ENST00000295797.4:c.1292G>T	p.Gly431Val	p.G431V	ENST00000295797	NM_002740.5	431	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0033466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	304	709	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189455	94189455	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	55	551	0	ENST00000323929.3:c.1550A>C	p.Asp517Ala	p.D517A	ENST00000323929	NM_005591.3	517	gAt/gCt																																																																															
CBL	867	MSKCC	GRCh37	11	119148993	119150015	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTACATCCTGGCAGGTACGGATCTAAACAGCGACTTTTTTCAGCTATGTAATAACCTTGGAAAATTCGGTATTATATAGCCTTTACTGATACAAGGGGTGGCCTGGCTTTTGGGGTTAGGTTTAAACTTTTACTTTTTTTTGATCTCTAGGAAATGTATTTTCTAGTAGATTAATATTTTAAGTATTTTCAGATGCATCTGTTACTATCTTTTGCTTCTTCTGCAGGAATCAGAAGGTCAGGGCTGTCCTTTCTGCCGATGTGAAATTAAAGGTACTGAACCCATCGTGGTAGATCCGTTTGATCCTAGAGGGAGTGGCAGCCTGTTGAGGCAAGGAGCAGAGGGAGCTCCCTCCCCAAATTATGATGATGATGATGATGAACGAGCTGATGATACTCTCTTCATGATGAAGGAATTGGCTGGTGCCAAGGTAAGATGGCAGTTTAGGAGACTGGCAAAATCCATTGTGAGTTGTCTTCTAAAGCCGTAAAACACTTAACGATATCCAAACTACAATGATAGGTAGTATTAATAGCTAATATTTATTGAGCATTTACTATATGACAGATATTGTGTTAAGCACTTTACTTGTTTTTTACTCAATCTTTACTACAGCCCTATGAGTACATACTACTATTATCCTTATTTAACAGATGAAGAAACTGAGGCACAAAGAGGTTAAGGAATTTGCCGAAGACCACACAGCTAGTAGGTTGAAGCATCTGTGAGCTGCATCTATGACCAGGCATTCCAGCTTAAGGCCCATGTTCTTACTGTCTGTATTTTTTAGGACTAAGACTTTATTCATATCTGTTGGTGGAGAATATGAGGGAGAAATAAAAGAACTGGACCCTCTTTTGCTAATGCAACTAGAATAAGTTCTGTTCCCTTTTTTTTTTTTTATTTTAATGGAGTCTTGGCATTAGAAGGTTGGGGCTGGGCATGCCCATAGCTCATGCCTATAATCCCAGTACTTTGGGACGTTGAGGCTGGAGGATCAGTTGAGCCCAGTTTGAGGCCAG	CTTACATCCTGGCAGGTACGGATCTAAACAGCGACTTTTTTCAGCTATGTAATAACCTTGGAAAATTCGGTATTATATAGCCTTTACTGATACAAGGGGTGGCCTGGCTTTTGGGGTTAGGTTTAAACTTTTACTTTTTTTTGATCTCTAGGAAATGTATTTTCTAGTAGATTAATATTTTAAGTATTTTCAGATGCATCTGTTACTATCTTTTGCTTCTTCTGCAGGAATCAGAAGGTCAGGGCTGTCCTTTCTGCCGATGTGAAATTAAAGGTACTGAACCCATCGTGGTAGATCCGTTTGATCCTAGAGGGAGTGGCAGCCTGTTGAGGCAAGGAGCAGAGGGAGCTCCCTCCCCAAATTATGATGATGATGATGATGAACGAGCTGATGATACTCTCTTCATGATGAAGGAATTGGCTGGTGCCAAGGTAAGATGGCAGTTTAGGAGACTGGCAAAATCCATTGTGAGTTGTCTTCTAAAGCCGTAAAACACTTAACGATATCCAAACTACAATGATAGGTAGTATTAATAGCTAATATTTATTGAGCATTTACTATATGACAGATATTGTGTTAAGCACTTTACTTGTTTTTTACTCAATCTTTACTACAGCCCTATGAGTACATACTACTATTATCCTTATTTAACAGATGAAGAAACTGAGGCACAAAGAGGTTAAGGAATTTGCCGAAGACCACACAGCTAGTAGGTTGAAGCATCTGTGAGCTGCATCTATGACCAGGCATTCCAGCTTAAGGCCCATGTTCTTACTGTCTGTATTTTTTAGGACTAAGACTTTATTCATATCTGTTGGTGGAGAATATGAGGGAGAAATAAAAGAACTGGACCCTCTTTTGCTAATGCAACTAGAATAAGTTCTGTTCCCTTTTTTTTTTTTTATTTTAATGGAGTCTTGGCATTAGAAGGTTGGGGCTGGGCATGCCCATAGCTCATGCCTATAATCCCAGTACTTTGGGACGTTGAGGCTGGAGGATCAGTTGAGCCCAGTTTGAGGCCAG	-			P-0033466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	106	560	0	ENST00000264033.4:c.1214_1431+593del		p.X405_splice	ENST00000264033	NM_005188.3	405																																																																																
FANCA	2175	MSKCC	GRCh37	16	89881018	89881018	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	151	470	0	ENST00000389301.3:c.193G>C	p.Glu65Gln	p.E65Q	ENST00000389301	NM_000135.2	65	Gaa/Caa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222777	5222777	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	188	655	0	ENST00000357368.4:c.3026A>C	p.Gln1009Pro	p.Q1009P	ENST00000357368	NM_002850.3	1009	cAa/cCa																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379803	17379804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	367	917	0	ENST00000359435.4:c.189dup	p.Asn64GlnfsTer8	p.N64Qfs*8	ENST00000359435	NM_001033549.1	63	ctc/ctCc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976392	18976392	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	197	872	0	ENST00000262803.5:c.3042G>C	p.Lys1014Asn	p.K1014N	ENST00000262803	NM_002911.3	1014	aaG/aaC																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31015950	31015950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	181	409	0	ENST00000375687.4:c.272C>A	p.Ser91Tyr	p.S91Y	ENST00000375687	NM_015338.5	91	tCt/tAt																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119720924	119720924	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	123	612	0	ENST00000316626.5:c.251T>A	p.Ile84Asn	p.I84N	ENST00000316626		84	aTc/aAc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99459223	99459257	+	frameshift_variant	Frame_Shift_Del	DEL	CATCGAACTCCTCTTCTCAGTTAATCGTGAAGTGG	CATCGAACTCCTCTTCTCAGTTAATCGTGAAGTGG	T			P-0033466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	253	789	0	ENST00000268035.6:c.1859_1893delinsT	p.Ala620ValfsTer11	p.A620Vfs*11	ENST00000268035	NM_000875.3	620	gCATCGAACTCCTCTTCTCAGTTAATCGTGAAGTGG/gT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319853	8319853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	129	568	0	ENST00000356435.5:c.5648G>A	p.Arg1883Gln	p.R1883Q	ENST00000356435		1883	cGa/cAa																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156734	20156734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	152	550	0	ENST00000379607.5:c.23G>A	p.Gly8Glu	p.G8E	ENST00000379607	NM_001412.3	8	gGa/gAa																																																																															
SESN3	143686	MSKCC	GRCh37	11	94924708	94924708	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	258	828	1	ENST00000536441.1:c.202A>T	p.Thr68Ser	p.T68S	ENST00000536441	NM_144665.3	68	Aca/Tca																																																																															
ALK	238	MSKCC	GRCh37	2	29543685	29543693	+	inframe_deletion	In_Frame_Del	DEL	GTGCCTTGG	GTGCCTTGG	-			P-0033513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	204	658	0	ENST00000389048.3:c.1470_1478del	p.Gln491_Thr493del	p.Q491_T493del	ENST00000389048	NM_004304.4	490	acCCAAGGCACa/aca																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31472316	31472316	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	256	682	0	ENST00000344624.3:c.2095A>G	p.Met699Val	p.M699V	ENST00000344624		699	Atg/Gtg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149509533	149509533	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0033513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	142	487	0	ENST00000261799.4:c.1368-2A>G		p.X456_splice	ENST00000261799	NM_002609.3	456																																																																																
ATM	472	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0033565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	17	352	0	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453132	140453132	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	32	247	0	ENST00000288602.6:c.1803A>T	p.Lys601Asn	p.K601N	ENST00000288602	NM_004333.4	601	aaA/aaT																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646981	23646981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs587776408		P-0033565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	60	691	3	ENST00000261584.4:c.886del	p.Met296Ter	p.M296*	ENST00000261584	NM_024675.3	296	Atg/tg																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	34	356	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561465	9561465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	37	440	0	ENST00000353224.5:c.317C>A	p.Pro106His	p.P106H	ENST00000353224	NM_177990.2	106	cCc/cAc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932289	36932289	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	50	631	0	ENST00000361632.4:c.2180A>G	p.Tyr727Cys	p.Y727C	ENST00000361632		727	tAt/tGt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117921	70117922	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	29	317	0	ENST00000245479.2:c.390dup	p.His131AlafsTer121	p.H131Afs*121	ENST00000245479	NM_000346.3	130	ttg/ttGg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37090446	37090446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	52	338	0	ENST00000231790.2:c.2041G>A	p.Ala681Thr	p.A681T	ENST00000231790	NM_000249.3	681	Gct/Act																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004882	150004882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	41	459	0	ENST00000253339.5:c.1343G>A	p.Gly448Glu	p.G448E	ENST00000253339		448	gGg/gAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	62	441	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068375	26068375	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	65	464	0	ENST00000435504.4:c.115C>T	p.Gln39Ter	p.Q39*	ENST00000435504		39	Cag/Tag																																																																															
AR	367	MSKCC	GRCh37	X	66765121	66765121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	58	500	1	ENST00000374690.3:c.133G>A	p.Ala45Thr	p.A45T	ENST00000374690	NM_000044.3	45	Gcg/Acg																																																																															
RET	5979	MSKCC	GRCh37	10	43610135	43610135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	71	785	0	ENST00000355710.3:c.2087C>T	p.Ser696Leu	p.S696L	ENST00000355710	NM_020975.4	696	tCg/tTg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26927926	26927926	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	38	356	0	ENST00000381527.3:c.365A>T	p.Gln122Leu	p.Q122L	ENST00000381527	NM_001260.1	122	cAg/cTg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226385	2226385	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0033599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	82	794	0	ENST00000326181.6:c.1998G>T	p.Lys666Asn	p.K666N	ENST00000326181	NM_032271.2	666	aaG/aaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	379	444	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0033609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	344	506	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198257104	198257104	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs759773104		P-0033609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	106	450	0	ENST00000335508.6:c.3838C>G	p.Leu1280Val	p.L1280V	ENST00000335508	NM_012433.2	1280	Ctc/Gtc																																																																															
PARP1	142	MSKCC	GRCh37	1	226573362	226573362	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	188	367	0	ENST00000366794.5:c.854A>T	p.Asp285Val	p.D285V	ENST00000366794	NM_001618.3	285	gAt/gTt																																																																															
AXL	558	MSKCC	GRCh37	19	41744035	41744035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1302	283	514	0	ENST00000301178.4:c.970C>A	p.Leu324Ile	p.L324I	ENST00000301178	NM_021913.4	324	Ctt/Att																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155257	185155257	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	79	306	0	ENST00000265026.3:c.498G>T	p.Glu166Asp	p.E166D	ENST00000265026	NM_004721.4	166	gaG/gaT																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638006	176638006	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs756688297		P-0033609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	195	513	0	ENST00000439151.2:c.2606A>T	p.Tyr869Phe	p.Y869F	ENST00000439151	NM_022455.4	869	tAc/tTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412743	63412743	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0033609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	223	475	0	ENST00000330258.3:c.424A>T	p.Arg142Ter	p.R142*	ENST00000330258	NM_152424.3	142	Aga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0033617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	441	688	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	285	474	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175324	112175324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	171	254	0	ENST00000257430.4:c.4033G>T	p.Glu1345Ter	p.E1345*	ENST00000257430	NM_000038.5	1345	Gaa/Taa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295801	212295801	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	121	492	0	ENST00000342788.4:c.2512C>T	p.Arg838Ter	p.R838*	ENST00000342788	NM_005235.2	838	Cga/Tga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346157	89346158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	41	290	0	ENST00000301030.4:c.6792dup	p.Ala2265ArgfsTer8	p.A2265Rfs*8	ENST00000301030	NM_001256183.1	2264	-/C																																																																															
SMO	6608	MSKCC	GRCh37	7	128845063	128845063	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	175	655	0	ENST00000249373.3:c.557A>T	p.Lys186Met	p.K186M	ENST00000249373	NM_005631.4	186	aAg/aTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247364	153247366	+	missense_variant	Missense_Mutation	ONP	CTC	CTC	TTT			P-0033617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	78	255	0	ENST00000281708.4:c.1436_1438delinsAAA	p.Arg479_Asp480delinsGlnAsn	p.R479_D480delinsQN	ENST00000281708	NM_033632.3	479	cGAGat/cAAAat																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0033644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	346	400	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	155	503	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0033644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	213	594	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
RB1	5925	MSKCC	GRCh37	13	48947596	48947596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	125	313	0	ENST00000267163.4:c.1183C>T	p.Gln395Ter	p.Q395*	ENST00000267163	NM_000321.2	395	Caa/Taa																																																																															
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0033644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	248	535	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																															
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	104	196	0	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111433	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0033644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	113	298	0	ENST00000346208.3:c.922-3C>T		p.X308_splice	ENST00000346208		308																																																																																
POLE	5426	MSKCC	GRCh37	12	133210837	133210837	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	203	560	0	ENST00000320574.5:c.5939G>A	p.Trp1980Ter	p.W1980*	ENST00000320574	NM_006231.2	1980	tGg/tAg																																																																															
CDH1	999	MSKCC	GRCh37	16	68842378	68842378	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	196	434	1	ENST00000261769.5:c.440del	p.Pro147LeufsTer68	p.P147Lfs*68	ENST00000261769	NM_004360.3	147	Cct/ct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	102	280	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	256	476	0	ENST00000349310.3:c.155T>A	p.Leu52His	p.L52H	ENST00000349310	NM_001014432.1	52	cTc/cAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0033672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	167	285	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
CTCF	10664	MSKCC	GRCh37	16	67644826	67644826	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	161	305	0	ENST00000264010.4:c.95delG	p.Gly32AlafsTer30	p.G32Afs*30	ENST00000264010	NM_006565.3	31	Ggg/gg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31451746	31451746	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0033672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	71	186	0	ENST00000344624.3:c.2576A>G	p.His859Arg	p.H859R	ENST00000344624		859	cAt/cGt																																																																															
ABL1	25	MSKCC	GRCh37	9	133738311	133738311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	24	372	0	ENST00000318560.5:c.711G>A	p.Met237Ile	p.M237I	ENST00000318560	NM_005157.4	237	atG/atA																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099406	157099426	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAGCAA	CAGCAGCAGCAGCAGCAGCAA	-	rs775084783		P-0033675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	60	202	0	ENST00000346085.5:c.363_383del	p.Gln125_Gln131del	p.Q125_Q131del	ENST00000346085	NM_020732.3	115	CAGCAGCAGCAGCAGCAGCAA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0033675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	275	589	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	155	335	0	ENST00000369535.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000369535	NM_002524.4	12	Ggt/Agt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604656	48604656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	137	269	0	ENST00000342988.3:c.1478A>G	p.Asp493Gly	p.D493G	ENST00000342988	NM_005359.5	493	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112173912	112173913	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	96	261	0	ENST00000257430.4:c.2624dup	p.Arg876AlafsTer36	p.R876Afs*36	ENST00000257430	NM_000038.5	874	tca/tcAa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117600	70117601	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	176	400	1	ENST00000245479.2:c.72dup	p.Thr25HisfsTer227	p.T25Hfs*227	ENST00000245479	NM_000346.3	23	agc/agCc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911624	114911624	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	263	306	0	ENST00000543371.1:c.1142A>T	p.Asn381Ile	p.N381I	ENST00000543371	NM_001198531.1	381	aAc/aTc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661996	227661996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	82	426	0	ENST00000305123.5:c.1459C>T	p.Arg487Trp	p.R487W	ENST00000305123	NM_005544.2	487	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	120	368	0	ENST00000263967.3:c.3062A>T	p.Tyr1021Phe	p.Y1021F	ENST00000263967	NM_006218.2	1021	tAc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0033723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	37	732	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098816	178098816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	10	768	0	ENST00000397062.3:c.229G>C	p.Asp77His	p.D77H	ENST00000397062	NM_006164.4	77	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0033723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	23	511	1	ENST00000269305.4:c.673-2A>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
TP53BP1	7158	MSKCC	GRCh37	15	43714075	43714075	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs773155828		P-0033723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	17	682	0	ENST00000382044.4:c.4078C>T	p.Arg1360Ter	p.R1360*	ENST00000382044	NM_001141980.1	1360	Cga/Tga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120484228	120484228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	10	672	3	ENST00000256646.2:c.2902G>A	p.Val968Ile	p.V968I	ENST00000256646	NM_024408.3	968	Gtc/Atc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134055	41134055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	19	575	0	ENST00000379561.5:c.1573C>T	p.Pro525Ser	p.P525S	ENST00000379561	NM_002015.3	525	Cct/Tct																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098961	+	inframe_insertion	In_Frame_Ins	INS	-	-	TAT			P-0033723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	10	384	0	ENST00000397062.3:c.82_84dupATA	p.Ile28dup	p.I28dup	ENST00000397062	NM_006164.4	28	-/ATA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66233134	66233134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	35	568	1	ENST00000273854.3:c.1865G>T	p.Gly622Val	p.G622V	ENST00000273854	NM_004439.5	622	gGc/gTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484254	8484254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	22	591	0	ENST00000356435.5:c.3278G>T	p.Gly1093Val	p.G1093V	ENST00000356435		1093	gGt/gTt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395119	139395119	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	53	659	0	ENST00000277541.6:c.5819G>T	p.Arg1940Leu	p.R1940L	ENST00000277541	NM_017617.3	1940	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	71	694	3	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0033741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	21	643	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0033741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	719	657	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																															
NF1	4763	MSKCC	GRCh37	17	29652872	29652873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	91	281	0	ENST00000358273.4:c.4871dup	p.Tyr1625IlefsTer16	p.Y1625Ifs*16	ENST00000358273	NM_001042492.2	1624	ata/aTta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	188	465	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0033760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	150	518	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	43	294	0	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs878854073		P-0033760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	139	410	1	ENST00000269305.4:c.673-1G>A		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
ALK	238	MSKCC	GRCh37	2	29451749	29451749	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0033760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	53	462	0	ENST00000389048.3:c.2815+1G>T		p.X939_splice	ENST00000389048	NM_004304.4	939																																																																																
ROS1	6098	MSKCC	GRCh37	6	117662615	117662615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	48	430	1	ENST00000368508.3:c.4850G>T	p.Arg1617Met	p.R1617M	ENST00000368508	NM_002944.2	1617	aGg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0033764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	569	499	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0033764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	439	813	2	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396464	396464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	150	795	0	ENST00000262320.3:c.562G>A	p.Glu188Lys	p.E188K	ENST00000262320	NM_003502.3	188	Gaa/Aaa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056244	26056244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	93	515	0	ENST00000343677.2:c.413C>T	p.Pro138Leu	p.P138L	ENST00000343677	NM_005319.3	138	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0033768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	202	517	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	72	311	2	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0033768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	44	399	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81819651	81819651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	76	491	0	ENST00000359376.3:c.57G>T	p.Lys19Asn	p.K19N	ENST00000359376	NM_002661.3	19	aaG/aaT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0033796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	321	498	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2983970	2983970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	119	826	0	ENST00000396946.4:c.560G>A	p.Arg187Gln	p.R187Q	ENST00000396946	NM_032415.4	187	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	42	508	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CIC	23152	MSKCC	GRCh37	19	42796756	42796756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	91	680	0	ENST00000575354.2:c.3214G>A	p.Val1072Met	p.V1072M	ENST00000575354	NM_015125.3	1072	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0033803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	53	221	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs770248150		P-0033803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	107	490	1	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																																																															
ATM	472	MSKCC	GRCh37	11	108115594	108115594	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	63	437	1	ENST00000278616.4:c.742C>T	p.Arg248Ter	p.R248*	ENST00000278616	NM_000051.3	248	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	233	666	1	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	24	186	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89693009	89693010	+	splice_donor_variant	Splice_Site	INS	-	-	TTGT			P-0033803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	10	229	0	ENST00000371953.3:c.492+2_492+3insTGTT		p.X164_splice	ENST00000371953	NM_000314.4	164																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0033809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	65	448	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0033809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	69	788	1	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034422	47034438	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCCGGGGCTTCGCCT	GAGCCGGGGCTTCGCCT	-			P-0033809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	108	360	0	ENST00000329236.7:c.276_292del	p.Gln92HisfsTer5	p.Q92Hfs*5	ENST00000329236	NM_001204466.1	92	caGAGCCGGGGCTTCGCCTtc/catc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	79	521	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	65	366	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	144	670	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																																																															
ATR	545	MSKCC	GRCh37	3	142243013	142243013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	85	441	0	ENST00000350721.4:c.3974G>A	p.Ser1325Asn	p.S1325N	ENST00000350721	NM_001184.3	1325	aGt/aAt																																																																															
KDR	3791	MSKCC	GRCh37	4	55970962	55970962	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	103	572	0	ENST00000263923.4:c.1835T>G	p.Leu612Trp	p.L612W	ENST00000263923	NM_002253.2	612	tTg/tGg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169929	32169929	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	156	735	0	ENST00000375023.3:c.3679G>T	p.Gly1227Trp	p.G1227W	ENST00000375023	NM_004557.3	1227	Ggg/Tgg																																																																															
ATRX	546	MSKCC	GRCh37	X	76952063	76952063	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0033816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	46	440	0	ENST00000373344.5:c.370+2T>A		p.X124_splice	ENST00000373344	NM_000489.3	124																																																																																
STK11	6794	MSKCC	GRCh37	19	1207042	1207097	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCTCATCGGCAAGTACCTGATGGGGGACCTGCTGGGGGAAGGCTCTTACGGCAA	AAGCTCATCGGCAAGTACCTGATGGGGGACCTGCTGGGGGAAGGCTCTTACGGCAA	-			P-0033850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	25	578	0	ENST00000326873.7:c.130_185del	p.Lys44GlyfsTer100	p.K44Gfs*100	ENST00000326873	NM_000455.4	44	AAGCTCATCGGCAAGTACCTGATGGGGGACCTGCTGGGGGAAGGCTCTTACGGCAAg/g																																																																															
RAD50	10111	MSKCC	GRCh37	5	131976451	131976451	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	15	456	0	ENST00000265335.6:c.3706A>G	p.Asn1236Asp	p.N1236D	ENST00000265335		1236	Aat/Gat																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3794887	3794903	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAACTTACTCTTAGCAC	AAACTTACTCTTAGCAC	G			P-0033850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	17	390	0	ENST00000262367.5:c.3974_3982+8delinsC		p.X1325_splice	ENST00000262367	NM_004380.2	1325																																																																																
BRIP1	83990	MSKCC	GRCh37	17	59761014	59761017	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0033885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	65	267	0	ENST00000259008.2:c.3390_3393delCTAT	p.Tyr1131LeufsTer18	p.Y1131Lfs*18	ENST00000259008	NM_032043.2	1130	atCTAT/at																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252994	36252995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	187	397	0	ENST00000300305.3:c.367dupG	p.Asp123GlyfsTer15	p.D123Gfs*15	ENST00000300305		123	gat/gGat																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720857	89720857	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0033885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	152	165	0	ENST00000371953.3:c.1008C>G	p.Tyr336Ter	p.Y336*	ENST00000371953	NM_000314.4	336	taC/taG																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279674	123279674	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	21	305	0	ENST00000358487.5:c.758C>G	p.Pro253Arg	p.P253R	ENST00000358487	NM_000141.4	253	cCt/cGt																																																																															
TET1	80312	MSKCC	GRCh37	10	70404534	70404534	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	149	350	0	ENST00000373644.4:c.2048A>G	p.Gln683Arg	p.Q683R	ENST00000373644	NM_030625.2	683	cAa/cGa																																																																															
CDH1	999	MSKCC	GRCh37	16	68857388	68857388	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0033885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	176	465	0	ENST00000261769.5:c.2023A>T	p.Lys675Ter	p.K675*	ENST00000261769	NM_004360.3	675	Aaa/Taa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155236	55155236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	12	482	0	ENST00000257290.5:c.2835C>A	p.His945Gln	p.H945Q	ENST00000257290	NM_006206.4	945	caC/caA																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004907	16004907	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	11	649	1	ENST00000268712.3:c.2347del	p.Gln783ArgfsTer2	p.Q783Rfs*2	ENST00000268712	NM_006311.3	783	Cag/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	35	664	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
LYN	4067	MSKCC	GRCh37	8	56922593	56922593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	50	609	0	ENST00000519728.1:c.1463C>T	p.Pro488Leu	p.P488L	ENST00000519728	NM_002350.3	488	cCa/cTa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933061	39933062	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0033929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	50	920	1	ENST00000378444.4:c.1537_1538delinsCT	p.Gly513Leu	p.G513L	ENST00000378444	NM_001123385.1	513	GGg/CTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0033941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	123	657	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0033941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	152	590	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577578	7577578	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	323	613	0	ENST00000269305.4:c.703A>G	p.Asn235Asp	p.N235D	ENST00000269305	NM_001126112.2	235	Aac/Gac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922097	39922097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	170	409	1	ENST00000378444.4:c.4075G>A	p.Gly1359Arg	p.G1359R	ENST00000378444	NM_001123385.1	1359	Ggg/Agg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884908	134884908	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202034365		P-0033941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	120	572	2	ENST00000398015.3:c.1684G>A	p.Val562Ile	p.V562I	ENST00000398015	NM_004441.4	562	Gtc/Atc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45795037	45795037	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	107	553	0	ENST00000372115.3:c.1549A>G	p.Asn517Asp	p.N517D	ENST00000372115	NM_001048171.1	517	Aat/Gat																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710658	114710659	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0033941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	233	385	0	ENST00000543371.1:c.143_144del	p.Leu48ArgfsTer3	p.L48Rfs*3	ENST00000543371	NM_001198531.1	48	cTA/c																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40375407	40375407	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	267	528	0	ENST00000293328.3:c.543G>T	p.Arg181Ser	p.R181S	ENST00000293328	NM_012448.3	181	agG/agT																																																																															
APC	324	MSKCC	GRCh37	5	112174132	112174132	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0033941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	93	427	0	ENST00000257430.4:c.2841T>A	p.Cys947Ter	p.C947*	ENST00000257430	NM_000038.5	947	tgT/tgA																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819326	3819326	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	420	577	0	ENST00000262367.5:c.2909A>C	p.Asn970Thr	p.N970T	ENST00000262367	NM_004380.2	970	aAc/aCc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	483	603	0	ENST00000171111.5:c.959G>A	p.Arg320Gln	p.R320Q	ENST00000171111	NM_203500.1	320	cGg/cAg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371634	225371634	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	232	563	0	ENST00000264414.4:c.970C>T	p.Gln324Ter	p.Q324*	ENST00000264414	NM_003590.4	324	Caa/Taa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507374	8507374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	268	368	1	ENST00000356435.5:c.1604C>T	p.Ser535Phe	p.S535F	ENST00000356435		535	tCt/tTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0033952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	348	317	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0033954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	211	678	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0033954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	235	715	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0033954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	73	243	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0033954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	116	427	0	ENST00000307078.5:c.1214_1215delAG	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																																																															
SOX2	6657	MSKCC	GRCh37	3	181431018	181431018	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	168	619	0	ENST00000325404.1:c.870C>A	p.Ser290Arg	p.S290R	ENST00000325404	NM_003106.3	290	agC/agA																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922974	44922974	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	85	258	0	ENST00000377967.4:c.1835G>T	p.Arg612Leu	p.R612L	ENST00000377967	NM_021140.2	612	cGa/cTa																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	34	242	1	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061249	38061249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	124	521	0	ENST00000250448.2:c.740A>G	p.His247Arg	p.H247R	ENST00000250448	NM_004496.3	247	cAc/cGc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864193	57864193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	69	558	1	ENST00000228682.2:c.1670G>A	p.Arg557His	p.R557H	ENST00000228682	NM_005269.2	557	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	41	332	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	50	499	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949096	44949096	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	25	447	0	ENST00000377967.4:c.3657G>A	p.Trp1219Ter	p.W1219*	ENST00000377967	NM_021140.2	1219	tgG/tgA																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612933	228612933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	79	481	0	ENST00000366696.1:c.94G>A	p.Ala32Thr	p.A32T	ENST00000366696	NM_003493.2	32	Gcc/Acc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115752	8115752	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	135	485	0	ENST00000346208.3:c.1102del	p.Met368CysfsTer36	p.M368Cfs*36	ENST00000346208		366	cgA/cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	115	599	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0033986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	161	461	0	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
RAD51C	5889	MSKCC	GRCh37	17	56787260	56787260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	113	758	0	ENST00000337432.4:c.746G>A	p.Arg249His	p.R249H	ENST00000337432	NM_058216.2	249	cGt/cAt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763317	59763317	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	87	864	0	ENST00000259008.2:c.2785C>G	p.Leu929Val	p.L929V	ENST00000259008	NM_032043.2	929	Cta/Gta																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62326114	62326114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	92	593	0	ENST00000508582.2:c.3202C>A	p.Gln1068Lys	p.Q1068K	ENST00000508582		1068	Cag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175191	112175192	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	58	274	0	ENST00000257430.4:c.3901dup	p.Thr1301AsnfsTer14	p.T1301Nfs*14	ENST00000257430	NM_000038.5	1300	-/A																																																																															
FYN	2534	MSKCC	GRCh37	6	112025282	112025282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	91	621	0	ENST00000368678.4:c.467G>A	p.Arg156Gln	p.R156Q	ENST00000368678		156	cGa/cAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151868387	151868387	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	88	576	0	ENST00000262189.6:c.9415A>T	p.Ser3139Cys	p.S3139C	ENST00000262189	NM_170606.2	3139	Agt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0034031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	412	507	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46277807	46277807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	66	328	0	ENST00000371998.3:c.3605G>A	p.Gly1202Asp	p.G1202D	ENST00000371998		1202	gGt/gAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541045	187541045	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	118	298	0	ENST00000441802.2:c.6695del	p.Asn2232IlefsTer8	p.N2232Ifs*8	ENST00000441802	NM_005245.3	2232	aAt/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	44	423	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0034033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	84	569	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200104	67200104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	151	477	0	ENST00000312629.5:c.491G>T	p.Gly164Val	p.G164V	ENST00000312629	NM_003952.2	164	gGc/gTc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061132	38061197	+	protein_altering_variant	In_Frame_Del	DEL	CCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGC	CCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGC	GTT			P-0034039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	133	253	2	ENST00000250448.2:c.792_857delinsAAC	p.Arg265_Gly286delinsThr	p.R265_G286delinsT	ENST00000250448	NM_004496.3	264	aaGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGc/aaAACc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3790454	3790454	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	228	388	0	ENST00000262367.5:c.4079G>C	p.Arg1360Pro	p.R1360P	ENST00000262367	NM_004380.2	1360	cGa/cCa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618800	37618801	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	80	297	0	ENST00000447079.4:c.477dup	p.Asp160Ter	p.D160*	ENST00000447079	NM_015083.1	159	gat/gaTt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37673746	37673746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	77	481	0	ENST00000447079.4:c.2900C>T	p.Pro967Leu	p.P967L	ENST00000447079	NM_015083.1	967	cCc/cTc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176720981	176720981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	82	347	0	ENST00000439151.2:c.6612G>C	p.Glu2204Asp	p.E2204D	ENST00000439151	NM_022455.4	2204	gaG/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0034088-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			200	241	568	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0034088-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			145	46	196	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034088-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			233	145	446	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46587863	46587863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034088-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	62	360	2	ENST00000263734.3:c.541C>T	p.Arg181Cys	p.R181C	ENST00000263734	NM_001430.4	181	Cgt/Tgt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15942874	15942875	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0034088-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			167	182	408	0	ENST00000268712.3:c.6827_6828del	p.Asp2276GlyfsTer4	p.D2276Gfs*4	ENST00000268712	NM_006311.3	2276	gAT/g																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212587142	212587142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034088-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			353	57	419	0	ENST00000342788.4:c.859G>A	p.Ala287Thr	p.A287T	ENST00000342788	NM_005235.2	287	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAAT			P-0034088-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			135	61	193	0	ENST00000257430.4:c.3920_3923dup	p.Lys1308AsnfsTer8	p.K1308Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAAATaa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70982010	70982011	+	missense_variant	Missense_Mutation	DNP	TA	TA	GT			P-0034088-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			980	102	628	0	ENST00000276594.2:c.85_86delinsAC	p.Tyr29Thr	p.Y29T	ENST00000276594	NM_024504.3	29	TAc/ACc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	79	913	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117888	70117888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	71	586	0	ENST00000245479.2:c.356C>A	p.Ala119Glu	p.A119E	ENST00000245479	NM_000346.3	119	gCg/gAg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588988	67588988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	11	344	1	ENST00000274335.5:c.1079C>T	p.Ala360Val	p.A360V	ENST00000274335		360	gCg/gTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42796883	42796883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	50	1168	1	ENST00000575354.2:c.3347del	p.Pro1116GlnfsTer45	p.P1116Qfs*45	ENST00000575354	NM_015125.3	1114	gCc/gc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023327	27023327	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	23	304	0	ENST00000324856.7:c.437del	p.Pro146GlnfsTer86	p.P146Qfs*86	ENST00000324856	NM_006015.4	145	Ccc/cc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273105	18273105	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	11	771	3	ENST00000222254.8:c.1000del	p.Asp334ThrfsTer7	p.D334Tfs*7	ENST00000222254	NM_005027.3	332	tGg/tg																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	15	1072	2	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794422	242794422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	39	964	0	ENST00000334409.5:c.520G>A	p.Val174Met	p.V174M	ENST00000334409	NM_005018.2	174	Gtg/Atg																																																																															
TERT	7015	MSKCC	GRCh37	5	1278854	1278854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	26	906	5	ENST00000310581.5:c.2188G>A	p.Ala730Thr	p.A730T	ENST00000310581	NM_198253.2	730	Gcc/Acc																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881363	111881363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	27	501	1	ENST00000393256.3:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000393256	NM_006538.4	14	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922363	178922363	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	24	445	0	ENST00000263967.3:c.1132T>C	p.Cys378Arg	p.C378R	ENST00000263967	NM_006218.2	378	Tgt/Cgt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231783	36231783	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	32	840	0	ENST00000300305.3:c.601del	p.Arg201GlufsTer10	p.R201Efs*10	ENST00000300305		201	Cga/ga																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266175	198266175	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	17	643	2	ENST00000335508.6:c.2445delT	p.Phe815LeufsTer19	p.F815Lfs*19	ENST00000335508	NM_012433.2	815	ttT/tt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210893	36210893	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	43	1003	4	ENST00000222270.7:c.649del	p.Arg217GlyfsTer22	p.R217Gfs*22	ENST00000222270	NM_014727.1	215	aCc/ac																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981546	201981547	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	66	1071	0	ENST00000359651.3:c.461dup	p.Asp155ArgfsTer6	p.D155Rfs*6	ENST00000359651		154	cta/cTta																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109962	115109962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	133	1129	0	ENST00000257566.3:c.1916G>A	p.Arg639His	p.R639H	ENST00000257566	NM_016569.3	639	cGc/cAc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610239	81610239	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	10	570	0	ENST00000298171.2:c.1837T>C	p.Tyr613His	p.Y613H	ENST00000298171	NM_000369.2	613	Tac/Cac																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225323	2225323	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	34	868	0	ENST00000326181.6:c.1408C>T	p.Gln470Ter	p.Q470*	ENST00000326181	NM_032271.2	470	Cag/Tag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633402	3633402	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	52	1199	0	ENST00000294008.3:c.4849T>C	p.Ser1617Pro	p.S1617P	ENST00000294008	NM_032444.2	1617	Tca/Cca																																																																															
CTCF	10664	MSKCC	GRCh37	16	67650698	67650698	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	22	704	1	ENST00000264010.4:c.1003G>T	p.Gly335Ter	p.G335*	ENST00000264010	NM_006565.3	335	Gga/Tga																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216588	2216588	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	31	1125	0	ENST00000398665.3:c.2232C>G	p.Asp744Glu	p.D744E	ENST00000398665	NM_032482.2	744	gaC/gaG																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4101034	4101034	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	19	609	0	ENST00000262948.5:c.688A>G	p.Thr230Ala	p.T230A	ENST00000262948	NM_030662.3	230	Acg/Gcg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183349	56183349	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	18	421	0	ENST00000399503.3:c.4257+2T>C		p.X1419_splice	ENST00000399503	NM_005921.1	1419																																																																																
APC	324	MSKCC	GRCh37	5	112175710	112175711	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTGCAGTTCAGAG			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	34	416	0	ENST00000257430.4:c.4421_4434dup	p.Val1479LeufsTer33	p.V1479Lfs*33	ENST00000257430	NM_000038.5	1473	-/GCTGCAGTTCAGAG																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020851	26020851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	43	479	0	ENST00000357647.3:c.134G>A	p.Gly45Asp	p.G45D	ENST00000357647	NM_003529.2	45	gGc/gAc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6042269	6042270	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TG	TG	-			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	21	453	0	ENST00000265849.7:c.354-3_354-2del		p.X118_splice	ENST00000265849	NM_000535.5	118																																																																																
SOX17	64321	MSKCC	GRCh37	8	55371909	55371909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	20	454	0	ENST00000297316.4:c.599G>A	p.Gly200Asp	p.G200D	ENST00000297316	NM_022454.3	200	gGc/gAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76776356	76776356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	29	421	0	ENST00000373344.5:c.7110G>T	p.Gln2370His	p.Q2370H	ENST00000373344	NM_000489.3	2370	caG/caT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306599	41306599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	64	753	0	ENST00000373198.4:c.1060G>A	p.Val354Ile	p.V354I	ENST00000373198	NM_133170.3	354	Gtt/Att																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115888	8115889	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0034110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	104	587	0	ENST00000346208.3:c.1236dupC	p.Ser413GlnfsTer94	p.S413Qfs*94	ENST00000346208		412	tcc/tCcc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627773	187627773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200050180		P-0034110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	136	548	0	ENST00000441802.2:c.3209G>A	p.Arg1070Gln	p.R1070Q	ENST00000441802	NM_005245.3	1070	cGa/cAa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	264	646	3	ENST00000337652.1:c.1561dupC	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971137	21971137	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	153	312	0	ENST00000304494.5:c.221A>G	p.Asp74Gly	p.D74G	ENST00000304494	NM_000077.4	74	gAc/gGc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026675	48026675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	85	480	1	ENST00000234420.5:c.1553C>T	p.Thr518Ile	p.T518I	ENST00000234420	NM_000179.2	518	aCc/aTc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115727	8115727	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	57	375	0	ENST00000346208.3:c.1073A>C	p.Lys358Thr	p.K358T	ENST00000346208		358	aAg/aCg																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873404	136873404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	86	469	1	ENST00000241393.3:c.94G>A	p.Glu32Lys	p.E32K	ENST00000241393	NM_003467.2	32	Gaa/Aaa																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458381	12458381	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	180	796	0	ENST00000287820.6:c.998G>C	p.Gly333Ala	p.G333A	ENST00000287820	NM_015869.4	333	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	222	846	1	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
TET2	54790	MSKCC	GRCh37	4	106197149	106197149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	32	370	0	ENST00000380013.4:c.5482C>T	p.Gln1828Ter	p.Q1828*	ENST00000380013	NM_001127208.2	1828	Cag/Tag																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72076726	72076726	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	106	555	0	ENST00000357731.5:c.771G>A	p.Trp257Ter	p.W257*	ENST00000357731	NM_173808.2	257	tgG/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112128142	112128142	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0034114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	53	279	0	ENST00000257430.4:c.646-1G>T		p.X216_splice	ENST00000257430	NM_000038.5	216																																																																																
APC	324	MSKCC	GRCh37	5	112162946	112162946	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0034114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	49	368	0	ENST00000257430.4:c.1548+2T>C		p.X516_splice	ENST00000257430	NM_000038.5	516																																																																																
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0034137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	288	478	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	199	255	2	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0034137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	330	539	3	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653789	89653789	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0034137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	255	306	0	ENST00000371953.3:c.87T>G	p.Tyr29Ter	p.Y29*	ENST00000371953	NM_000314.4	29	taT/taG																																																																															
STK40	83931	MSKCC	GRCh37	1	36809504	36809504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	172	563	4	ENST00000373129.3:c.961G>A	p.Ala321Thr	p.A321T	ENST00000373129	NM_032017.1	321	Gcc/Acc																																																																															
FH	2271	MSKCC	GRCh37	1	241665799	241665799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	143	429	0	ENST00000366560.3:c.1180G>T	p.Val394Phe	p.V394F	ENST00000366560	NM_000143.3	394	Gtc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	165	623	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0034162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	108	645	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0034162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	133	427	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0034162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	39	306	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604673	48604673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	29	512	0	ENST00000342988.3:c.1495T>C	p.Cys499Arg	p.C499R	ENST00000342988	NM_005359.5	499	Tgc/Cgc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119808	70119808	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	112	705	0	ENST00000245479.2:c.811del	p.Arg271AlafsTer8	p.R271Afs*8	ENST00000245479	NM_000346.3	270	ttC/tt																																																																															
BRAF	673	MSKCC	GRCh37	7	140476811	140476811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	123	723	1	ENST00000288602.6:c.1595G>A	p.Cys532Tyr	p.C532Y	ENST00000288602	NM_004333.4	532	tGt/tAt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982404	201982407	+	frameshift_variant	Frame_Shift_Ins	INS	CGAG	CGAG	TCGAA			P-0034162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	118	786	3	ENST00000359651.3:c.783_786delinsTCGAA	p.Glu262ArgfsTer39	p.E262Rfs*39	ENST00000359651		261	ctCGAG/ctTCGAA																																																																															
ATM	472	MSKCC	GRCh37	11	108205824	108205825	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAG			P-0034162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	62	477	0	ENST00000278616.4:c.8141_8143dup	p.Gln2714dup	p.Q2714dup	ENST00000278616	NM_000051.3	2714	-/CAG																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103506646	103506650	+	frameshift_variant	Frame_Shift_Del	DEL	CACTA	CACTA	-			P-0034162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	24	252	0	ENST00000355739.4:c.390_394del	p.Leu131GlnfsTer30	p.L131Qfs*30	ENST00000355739	NM_000123.3	130	gCACTA/g																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119830	70119863	+	frameshift_variant	Frame_Shift_Del	DEL	CTGAGCAGCGACGTCATCTCCAACATCGAGACCT	CTGAGCAGCGACGTCATCTCCAACATCGAGACCT	AG			P-0034162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	42	794	2	ENST00000245479.2:c.832_865delinsAG	p.Leu278SerfsTer7	p.L278Sfs*7	ENST00000245479	NM_000346.3	278	CTGAGCAGCGACGTCATCTCCAACATCGAGACCTtc/AGtc																																																																															
CENPA	1058	MSKCC	GRCh37	2	27016121	27016121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	100	634	0	ENST00000335756.4:c.397C>T	p.Arg133Trp	p.R133W	ENST00000335756	NM_001809.3	133	Cgg/Tgg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178097176	178097176	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	104	511	0	ENST00000397062.3:c.538A>G	p.Met180Val	p.M180V	ENST00000397062	NM_006164.4	180	Atg/Gtg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143130105	143130105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	42	803	0	ENST00000262992.4:c.911G>A	p.Cys304Tyr	p.C304Y	ENST00000262992	NM_001101669.1	304	tGt/tAt																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793566	89793566	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	18	399	0	ENST00000336032.3:c.635A>T	p.Asn212Ile	p.N212I	ENST00000336032	NM_006813.2	212	aAc/aTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0034166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	222	390	0				ENST00000310581	NM_198253.2																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0034166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	200	384	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181843	56181843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	237	450	0	ENST00000399503.3:c.4067G>A	p.Gly1356Asp	p.G1356D	ENST00000399503	NM_005921.1	1356	gGc/gAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	318	519	0	ENST00000371953.3:c.389delG	p.Arg130GlnfsTer4	p.R130Qfs*4	ENST00000371953	NM_000314.4	130	cGa/ca																																																																															
RARA	5914	MSKCC	GRCh37	17	38512315	38512317	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0034166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	339	656	0	ENST00000254066.5:c.1228_1230del	p.Ile410del	p.I410del	ENST00000254066	NM_000964.3	409	cTCAtc/ctc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061261	38061265	+	missense_variant	Missense_Mutation	ONP	TAGGA	TAGGA	CAGGC			P-0034166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	491	701	0	ENST00000250448.2:c.724_728delinsGCCTG	p.Ser242_Tyr243delinsAlaCys	p.S242_Y243delinsAC	ENST00000250448	NM_004496.3	242	TCCTAc/GCCTGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	172	634	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	28	479	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0034167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	67	356	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577518	7577519	+	inframe_insertion	In_Frame_Ins	INS	-	-	GATGGTGAG			P-0034167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	95	854	1	ENST00000269305.4:c.754_762dup	p.Leu252_Ile254dup	p.L252_I254dup	ENST00000269305	NM_001126112.2	252	-/CTCACCATC																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5208381	5208381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	97	725	1	ENST00000357368.4:c.5509C>T	p.Arg1837Trp	p.R1837W	ENST00000357368	NM_002850.3	1837	Cgg/Tgg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155211	55155211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	84	663	1	ENST00000257290.5:c.2810C>T	p.Pro937Leu	p.P937L	ENST00000257290	NM_006206.4	937	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112175513	112175514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0034167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	169	445	0	ENST00000257430.4:c.4222_4223insTT	p.Glu1408ValfsTer8	p.E1408Vfs*8	ENST00000257430	NM_000038.5	1408	gaa/gTTaa																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0034175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	51	470	2	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0034175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	46	465	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032288	26032288	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0034175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	30	326	0	ENST00000244661.2:c.1A>G	p.Met1?	p.M1?	ENST00000244661	NM_003537.3	1	Atg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	92	501	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858337	9858337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	30	513	0	ENST00000330684.3:c.3064C>T	p.Arg1022Cys	p.R1022C	ENST00000330684	NM_001134407.1	1022	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0034182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	160	621	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032481	12032481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	74	343	0	ENST00000353533.5:c.917C>T	p.Pro306Leu	p.P306L	ENST00000353533	NM_003010.3	306	cCt/cTt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678783	52678784	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	97	407	0	ENST00000394830.3:c.835dupA	p.Ile279AsnfsTer8	p.I279Nfs*8	ENST00000394830	NM_018313.4	279	ata/aAta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0034182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	88	339	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0034182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	96	358	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933586	39933586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	134	605	0	ENST00000378444.4:c.1013G>A	p.Arg338Gln	p.R338Q	ENST00000378444	NM_001123385.1	338	cGg/cAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411915	63411931	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGATACATTTGGGCA	GTGGATACATTTGGGCA	-			P-0034182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	220	941	0	ENST00000330258.3:c.1236_1252del	p.Met415TyrfsTer20	p.M415Yfs*20	ENST00000330258	NM_152424.3	412	acTGCCCAAATGTATCCACgg/acgg																																																																															
ERG	2078	MSKCC	GRCh37	21	39764303	39764303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	182	756	0	ENST00000288319.7:c.809C>T	p.Ser270Leu	p.S270L	ENST00000288319	NM_182918.3	270	tCg/tTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843622	3843623	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	144	592	0	ENST00000262367.5:c.980_981insT	p.Gln327HisfsTer23	p.Q327Hfs*23	ENST00000262367	NM_004380.2	327	cag/caTg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38173543	38173543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1953	127	564	1	ENST00000317025.8:c.1873G>T	p.Asp625Tyr	p.D625Y	ENST00000317025	NM_023034.1	625	Gat/Tat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	23	740	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0034188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	16	416	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0034189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	40	630	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0034189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	59	522	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112175751	112175752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTAT			P-0034189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	24	406	0	ENST00000257430.4:c.4462_4466dup	p.Leu1489PhefsTer20	p.L1489Ffs*20	ENST00000257430	NM_000038.5	1487	act/acTTTATt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0034213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	167	429	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	226	716	0	ENST00000269305.4:c.712T>G	p.Cys238Gly	p.C238G	ENST00000269305	NM_001126112.2	238	Tgt/Ggt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41408878	41408878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	37	419	0	ENST00000373198.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000373198	NM_133170.3	183	cGg/cAg																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84391389	84391389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	195	858	0	ENST00000321945.7:c.443G>A	p.Arg148Gln	p.R148Q	ENST00000321945	NM_139076.2	148	cGa/cAa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9928076	9928076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	35	300	0	ENST00000330684.3:c.1663G>A	p.Ala555Thr	p.A555T	ENST00000330684	NM_001134407.1	555	Gcc/Acc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987076	36987076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	163	756	0	ENST00000354822.5:c.613G>A	p.Glu205Lys	p.E205K	ENST00000354822	NM_001079668.2	205	Gag/Aag																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246670360	246670360	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	59	348	0	ENST00000388985.4:c.160C>G	p.Leu54Val	p.L54V	ENST00000388985		54	Ctc/Gtc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18650683	18650683	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0034213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	43	466	0	ENST00000266497.5:c.2893+1G>A		p.X965_splice	ENST00000266497		965																																																																																
IRS1	3667	MSKCC	GRCh37	2	227661015	227661015	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201133410		P-0034213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	132	608	0	ENST00000305123.5:c.2440G>A	p.Asp814Asn	p.D814N	ENST00000305123	NM_005544.2	814	Gac/Aac																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120610	94120610	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	50	526	0	ENST00000369303.4:c.441C>G	p.Asp147Glu	p.D147E	ENST00000369303	NM_004440.3	147	gaC/gaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7572932	7572933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	377	662	0	ENST00000269305.4:c.1176dupA	p.Asp393ArgfsTer78	p.D393Rfs*78	ENST00000269305	NM_001126112.2	392	-/A																																																																															
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520017		P-0034214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	628	939	1	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220640	1220640	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	656	971	2	ENST00000326873.7:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000326873	NM_000455.4	220	Cag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044850	47044850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	178	965	0	ENST00000329236.7:c.1942C>T	p.Arg648Ter	p.R648*	ENST00000329236	NM_001204466.1	648	Cga/Tga																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256784	19256784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	482	424	0	ENST00000162023.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000162023		310	tCc/tTc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849883	156849883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	287	876	0	ENST00000524377.1:c.2139C>A	p.Phe713Leu	p.F713L	ENST00000524377	NM_002529.3	713	ttC/ttA																																																																															
FH	2271	MSKCC	GRCh37	1	241669430	241669430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	53	491	0	ENST00000366560.3:c.777G>A	p.Met259Ile	p.M259I	ENST00000366560	NM_000143.3	259	atG/atA																																																																															
FLT3	2322	MSKCC	GRCh37	13	28609656	28609656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	186	658	0	ENST00000241453.7:c.1573G>C	p.Glu525Gln	p.E525Q	ENST00000241453	NM_004119.2	525	Gag/Cag																																																																															
SOS1	6654	MSKCC	GRCh37	2	39234206	39234206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	235	700	0	ENST00000402219.2:c.2639C>T	p.Ser880Leu	p.S880L	ENST00000402219	NM_005633.3	880	tCa/tTa																																																																															
STK19	8859	MSKCC	GRCh37	6	31948302	31948302	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	406	960	2	ENST00000375331.2:c.878G>C	p.Arg293Thr	p.R293T	ENST00000375331	NM_004197.1	293	aGa/aCa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001068	150001068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	151	550	0	ENST00000253339.5:c.2536G>A	p.Asp846Asn	p.D846N	ENST00000253339		846	Gac/Aac																																																																															
ABL1	25	MSKCC	GRCh37	9	133748316	133748316	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	128	671	0	ENST00000318560.5:c.977A>G	p.Tyr326Cys	p.Y326C	ENST00000318560	NM_005157.4	326	tAc/tGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0034231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	883	421	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	130	703	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433754	49433754	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	62	965	0	ENST00000301067.7:c.7799C>A	p.Ser2600Tyr	p.S2600Y	ENST00000301067	NM_003482.3	2600	tCc/tAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637781	176637781	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	172	675	0	ENST00000439151.2:c.2381A>T	p.His794Leu	p.H794L	ENST00000439151	NM_022455.4	794	cAc/cTc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117874101	117874101	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	85	425	0	ENST00000297338.2:c.353A>G	p.Asp118Gly	p.D118G	ENST00000297338	NM_006265.2	118	gAt/gGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0034232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	72	634	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793663		P-0034232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	115	646	1	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0034232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	56	408	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	51	390	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
KDR	3791	MSKCC	GRCh37	4	55956221	55956221	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	128	626	0	ENST00000263923.4:c.3094C>T	p.Arg1032Ter	p.R1032*	ENST00000263923	NM_002253.2	1032	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922328	178922328	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	71	469	0	ENST00000263967.3:c.1097C>G	p.Pro366Arg	p.P366R	ENST00000263967	NM_006218.2	366	cCc/cGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573428	48573428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	26	213	0	ENST00000342988.3:c.12G>A	p.Met4Ile	p.M4I	ENST00000342988	NM_005359.5	4	atG/atA																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	36	563	0	ENST00000347630.2:c.305T>C	p.Phe102Ser	p.F102S	ENST00000347630	NM_001007230.1	102	tTc/tCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	60	512	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0034264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	44	274	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103498674	103498674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	59	362	0	ENST00000355739.4:c.58G>A	p.Glu20Lys	p.E20K	ENST00000355739	NM_000123.3	20	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578264	7578265	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATA			P-0034264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	88	459	0	ENST00000269305.4:c.582_584dup	p.Ile195dup	p.I195dup	ENST00000269305	NM_001126112.2	195	atc/atTATc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372423	55372423	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	115	714	2	ENST00000297316.4:c.1113C>A	p.Cys371Ter	p.C371*	ENST00000297316	NM_022454.3	371	tgC/tgA																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817729	3817729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	58	458	0	ENST00000262367.5:c.3242G>A	p.Arg1081His	p.R1081H	ENST00000262367	NM_004380.2	1081	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	31	569	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0034297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	34	372	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	135	608	0	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593466	48593466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	71	485	2	ENST00000342988.3:c.1217C>T	p.Ala406Val	p.A406V	ENST00000342988	NM_005359.5	406	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112174430	112174430	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	15	307	0	ENST00000257430.4:c.3139G>T	p.Glu1047Ter	p.E1047*	ENST00000257430	NM_000038.5	1047	Gaa/Taa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120132	70120133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0034297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	77	259	0	ENST00000245479.2:c.1137_1138dupGC	p.His380ArgfsTer4	p.H380Rfs*4	ENST00000245479	NM_000346.3	378	-/GC																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214866	36214866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	194	945	1	ENST00000222270.7:c.3292G>A	p.Gly1098Arg	p.G1098R	ENST00000222270	NM_014727.1	1098	Ggg/Agg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528243	157528243	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	88	636	1	ENST00000346085.5:c.5968C>T	p.Arg1990Ter	p.R1990*	ENST00000346085	NM_020732.3	1990	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0034342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			603	237	615	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0034342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	294	740	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28644632	28644632	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			672	93	695	1	ENST00000241453.7:c.161C>A	p.Pro54His	p.P54H	ENST00000241453	NM_004119.2	54	cCc/cAc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748096	41748096	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			70	11	83	0	ENST00000226382.2:c.673G>T	p.Gly225Trp	p.G225W	ENST00000226382	NM_003924.3	225	Ggg/Tgg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192432	138192432	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			331	68	382	0	ENST00000237289.4:c.68A>G	p.Glu23Gly	p.E23G	ENST00000237289	NM_001270507.1	23	gAg/gGg																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0034368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	368	627	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827732	72827732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	170	504	1	ENST00000268489.5:c.8849G>A	p.Arg2950His	p.R2950H	ENST00000268489	NM_006885.3	2950	cGc/cAc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867291	45867291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	159	599	1	ENST00000391945.4:c.902C>T	p.Thr301Met	p.T301M	ENST00000391945	NM_000400.3	301	aCg/aTg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115263331	115263331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	85	501	0	ENST00000438362.2:c.2019G>A	p.Met673Ile	p.M673I	ENST00000438362	NM_001242891.1	673	atG/atA																																																																															
INSR	3643	MSKCC	GRCh37	19	7172404	7172404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	81	459	1	ENST00000302850.5:c.1165G>A	p.Glu389Lys	p.E389K	ENST00000302850	NM_000208.2	389	Gaa/Aaa																																																																															
BARD1	580	MSKCC	GRCh37	2	215645900	215645900	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	138	612	0	ENST00000260947.4:c.698A>C	p.Glu233Ala	p.E233A	ENST00000260947	NM_000465.2	233	gAg/gCg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161825	47161825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	91	409	0	ENST00000409792.3:c.4301G>A	p.Gly1434Glu	p.G1434E	ENST00000409792	NM_014159.6	1434	gGa/gAa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98240446	98240446	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	77	361	0	ENST00000331920.6:c.1238A>G	p.Gln413Arg	p.Q413R	ENST00000331920	NM_000264.3	413	cAg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578289	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AGATGCTGAGGAGGGGCCAGAC	AGATGCTGAGGAGGGGCCAGAC	GGTCTT			P-0034376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	279	461	1	ENST00000269305.4:c.560_581delinsAAGACC	p.Gly187GlufsTer55	p.G187Efs*55	ENST00000269305	NM_001126112.2	187	gGTCTGGCCCCTCCTCAGCATCTt/gAAGACCt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011192	12011192	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	206	290	1	ENST00000353533.5:c.599T>C	p.Ile200Thr	p.I200T	ENST00000353533	NM_003010.3	200	aTt/aCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0034381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	23	653	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	581	619	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	141	257	1	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465600	8465600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	686	602	1	ENST00000356435.5:c.3580G>A	p.Ala1194Thr	p.A1194T	ENST00000356435		1194	Gct/Act																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670674	134670674	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	376	730	0	ENST00000398015.3:c.585G>C	p.Lys195Asn	p.K195N	ENST00000398015	NM_004441.4	195	aaG/aaC																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67593315	67593317	+	inframe_deletion	In_Frame_Del	DEL	GTA	GTA	-			P-0034431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	74	342	0	ENST00000274335.5:c.2061_2063del	p.Leu687_Tyr688delinsPhe	p.L687_Y688delinsF	ENST00000274335		687	ttGTAc/ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	110	451	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0034447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	76	648	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
SESN2	83667	MSKCC	GRCh37	1	28605681	28605681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	64	523	0	ENST00000253063.3:c.1285G>A	p.Ala429Thr	p.A429T	ENST00000253063	NM_031459.4	429	Gcc/Acc																																																																															
CENPA	1058	MSKCC	GRCh37	2	27016034	27016034	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	58	559	0	ENST00000335756.4:c.310C>A	p.His104Asn	p.H104N	ENST00000335756	NM_001809.3	104	Cat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	122	551	0	ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465043	120465043	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	45	349	0	ENST00000256646.2:c.5029C>G	p.Gln1677Glu	p.Q1677E	ENST00000256646	NM_024408.3	1677	Cag/Gag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47108559	47108559	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0034450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	67	404	1	ENST00000409792.3:c.6109+1G>A		p.X2037_splice	ENST00000409792	NM_014159.6	2037																																																																																
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0034469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	69	594	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	82	443	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	308	716	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916944	+	inframe_deletion	In_Frame_Del	DEL	GTGAAGAAA	GTGAAGAAA	-			P-0034473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	125	415	0	ENST00000263967.3:c.323_331del	p.Arg108_Lys111delinsGln	p.R108_K111delinsQ	ENST00000263967	NM_006218.2	108	cGTGAAGAAAag/cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	339	626	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0034478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	79	325	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115916	8115916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	217	473	0	ENST00000346208.3:c.1262C>T	p.Pro421Leu	p.P421L	ENST00000346208		421	cCg/cTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106164779	106164779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	120	507	0	ENST00000380013.4:c.3647G>A	p.Arg1216Gln	p.R1216Q	ENST00000380013	NM_001127208.2	1216	cGa/cAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419987	41419987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	120	515	1	ENST00000373198.4:c.334C>T	p.Arg112Cys	p.R112C	ENST00000373198	NM_133170.3	112	Cgt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420871	49420871	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	133	656	2	ENST00000301067.7:c.14878C>T	p.Arg4960Ter	p.R4960*	ENST00000301067	NM_003482.3	4960	Cga/Tga																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375560	15375560	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1296	83	796	0	ENST00000263377.2:c.867G>C	p.Lys289Asn	p.K289N	ENST00000263377	NM_058243.2	289	aaG/aaC																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023727	31023727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	205	724	1	ENST00000375687.4:c.3212C>T	p.Ala1071Val	p.A1071V	ENST00000375687	NM_015338.5	1071	gCg/gTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098490	47098490	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	42	520	0	ENST00000409792.3:c.6784C>G	p.Pro2262Ala	p.P2262A	ENST00000409792	NM_014159.6	2262	Ccc/Gcc																																																																															
TET1	80312	MSKCC	GRCh37	10	70405955	70405955	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	92	494	1	ENST00000373644.4:c.3469G>C	p.Asp1157His	p.D1157H	ENST00000373644	NM_030625.2	1157	Gat/Cat																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64132894	64132894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	70	609	0	ENST00000334205.4:c.1028C>T	p.Ser343Leu	p.S343L	ENST00000334205	NM_003942.2	343	tCa/tTa																																																																															
ATM	472	MSKCC	GRCh37	11	108236220	108236220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	105	518	1	ENST00000278616.4:c.9156G>T	p.Trp3052Cys	p.W3052C	ENST00000278616	NM_000051.3	3052	tgG/tgT																																																																															
POLE	5426	MSKCC	GRCh37	12	133248872	133248872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	133	552	2	ENST00000320574.5:c.1723G>A	p.Glu575Lys	p.E575K	ENST00000320574	NM_006231.2	575	Gag/Aag																																																																															
RAD51	5888	MSKCC	GRCh37	15	41022050	41022050	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0034503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	81	532	0	ENST00000267868.3:c.775-1G>C		p.X259_splice	ENST00000267868	NM_002875.4	259																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3801803	3801803	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	62	414	0	ENST00000262367.5:c.3703C>G	p.His1235Asp	p.H1235D	ENST00000262367	NM_004380.2	1235	Cat/Gat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832607	72832607	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0034503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	94	251	0	ENST00000268489.5:c.3974C>G	p.Ser1325Ter	p.S1325*	ENST00000268489	NM_006885.3	1325	tCa/tGa																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805552	46805552	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769634543		P-0034503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	72	745	1	ENST00000290295.7:c.404G>A	p.Gly135Glu	p.G135E	ENST00000290295	NM_006361.5	135	gGa/gAa																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770065	56770065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	61	435	0	ENST00000337432.4:c.61C>T	p.Pro21Ser	p.P21S	ENST00000337432	NM_058216.2	21	Cca/Tca																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59926549	59926549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	157	594	0	ENST00000259008.2:c.448G>A	p.Glu150Lys	p.E150K	ENST00000259008	NM_032043.2	150	Gaa/Aaa																																																																															
CALR	811	MSKCC	GRCh37	19	13054656	13054656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	59	485	0	ENST00000316448.5:c.1183G>A	p.Glu395Lys	p.E395K	ENST00000316448	NM_004343.3	395	Gag/Aag																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520009		P-0034503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	46	457	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99156122	99156122	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	53	472	0	ENST00000074304.5:c.802G>C	p.Glu268Gln	p.E268Q	ENST00000074304	NM_001134224.1	268	Gag/Cag																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664519	138664519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	18	185	0	ENST00000330315.3:c.1046G>A	p.Arg349Gln	p.R349Q	ENST00000330315	NM_023067.3	349	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	128	551	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163533	32163533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	100	434	1	ENST00000375023.3:c.5693G>A	p.Arg1898Gln	p.R1898Q	ENST00000375023	NM_004557.3	1898	cGg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845205	151845205	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	118	468	0	ENST00000262189.6:c.13807G>T	p.Glu4603Ter	p.E4603*	ENST00000262189	NM_170606.2	4603	Gag/Tag																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5557620	5557620	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0034503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	94	468	0	ENST00000397747.3:c.634C>T	p.Gln212Ter	p.Q212*	ENST00000397747	NM_025239.3	212	Cag/Tag																																																																															
BTK	695	MSKCC	GRCh37	X	100626688	100626688	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0034503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	36	386	0	ENST00000308731.7:c.242G>A	p.Arg81Lys	p.R81K	ENST00000308731	NM_000061.2	81	aGa/aAa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123195078	123195078	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	95	350	0	ENST00000218089.9:c.1421A>G	p.His474Arg	p.H474R	ENST00000218089	NM_001042749.1	474	cAt/cGt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37092008	37092009	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0034503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	51	457	0	ENST00000231790.2:c.2135_2136delinsA	p.Trp712Ter	p.W712*	ENST00000231790	NM_000249.3	712	tGG/tA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	33	546	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0034504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	90	605	1	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0034504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	15	291	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11924303	11924303	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	12	39	0	ENST00000353533.5:c.100G>T	p.Val34Phe	p.V34F	ENST00000353533	NM_003010.3	34	Gtc/Ttc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437530	56437531	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	91	539	0	ENST00000407977.2:c.931dup	p.Leu311ProfsTer132	p.L311Pfs*132	ENST00000407977		311	ctc/cCtc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55151650	55151651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AATGTAAGTTCAAGGAACACAGACCTTTTTAGACCCAGATTTC			P-0034504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	18	587	0	ENST00000257290.5:c.2438_2439+41dup		p.-812fs	ENST00000257290	NM_006206.4	812	-/AATGTAAGTTCAAGGAACACAGACCTTTTTAGACCCAGATTTC																																																																															
APC	324	MSKCC	GRCh37	5	112175895	112176051	+	frameshift_variant	Frame_Shift_Del	DEL	ATGAAACAGAATCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTC	ATGAAACAGAATCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTC	-			P-0034504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	25	249	0	ENST00000257430.4:c.4606_4762del	p.Glu1536HisfsTer62	p.E1536Hfs*62	ENST00000257430	NM_000038.5	1535	aATGAAACAGAATCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTCa/aa																																																																															
AR	367	MSKCC	GRCh37	X	66931337	66931337	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	92	249	0	ENST00000374690.3:c.1979T>G	p.Leu660Arg	p.L660R	ENST00000374690	NM_000044.3	660	cTg/cGg																																																																															
AR	367	MSKCC	GRCh37	X	66765448	66765450	+	missense_variant	Missense_Mutation	ONP	GAC	GAC	AAA			P-0034504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	24	284	0	ENST00000374690.3:c.460_462delinsAAA	p.Asp154Lys	p.D154K	ENST00000374690	NM_000044.3	154	GAC/AAA																																																																															
MYC	4609	MSKCC	GRCh37	8	128752673	128752675	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0034514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	34	168	0	ENST00000377970.2:c.838_840delGTT	p.Val280del	p.V280del	ENST00000377970	NM_002467.4	278	gaTGTt/gat																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865356	57865356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	485	582	1	ENST00000228682.2:c.2833G>A	p.Val945Met	p.V945M	ENST00000228682	NM_005269.2	945	Gtg/Atg																																																																															
CD79A	973	MSKCC	GRCh37	19	42381403	42381403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	257	497	0	ENST00000221972.3:c.29C>T	p.Ala10Val	p.A10V	ENST00000221972	NM_021601.3	10	gCt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	56	415	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0034560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	149	604	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76939279	76939279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	81	684	0	ENST00000373344.5:c.1469G>T	p.Gly490Val	p.G490V	ENST00000373344	NM_000489.3	490	gGt/gTt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867469	35867469	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs191585195		P-0034560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	19	268	0	ENST00000303115.3:c.283G>A	p.Glu95Lys	p.E95K	ENST00000303115	NM_002185.3	95	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs878854073		P-0034560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	87	461	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27100896	27100896	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	96	482	0	ENST00000324856.7:c.4178A>T	p.Tyr1393Phe	p.Y1393F	ENST00000324856	NM_006015.4	1393	tAc/tTc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609601	81609601	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	98	536	0	ENST00000298171.2:c.1199C>G	p.Pro400Arg	p.P400R	ENST00000298171	NM_000369.2	400	cCc/cGc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472644	88472644	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	43	319	0	ENST00000360948.2:c.1911G>T	p.Met637Ile	p.M637I	ENST00000360948	NM_001012338.2	637	atG/atT																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647510	23647510	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	91	574	0	ENST00000261584.4:c.357A>T	p.Gln119His	p.Q119H	ENST00000261584	NM_024675.3	119	caA/caT																																																																															
SPOP	8405	MSKCC	GRCh37	17	47684713	47684713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	63	410	0	ENST00000347630.2:c.736G>T	p.Val246Leu	p.V246L	ENST00000347630	NM_001007230.1	246	Gtg/Ttg																																																																															
CALR	811	MSKCC	GRCh37	19	13051651	13051651	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	170	511	0	ENST00000316448.5:c.910A>T	p.Ser304Cys	p.S304C	ENST00000316448	NM_004343.3	304	Agt/Tgt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61710148	61710148	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	17	338	0	ENST00000401558.2:c.2756T>G	p.Phe919Cys	p.F919C	ENST00000401558	NM_003400.3	919	tTt/tGt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57470707	57470707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	40	314	0	ENST00000371085.3:c.180G>T	p.Met60Ile	p.M60I	ENST00000371085	NM_000516.4	60	atG/atT																																																																															
ATR	545	MSKCC	GRCh37	3	142204121	142204121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	73	396	0	ENST00000350721.4:c.6082G>T	p.Val2028Leu	p.V2028L	ENST00000350721	NM_001184.3	2028	Gtg/Ttg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169980	32169980	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	66	682	0	ENST00000375023.3:c.3628C>A	p.Pro1210Thr	p.P1210T	ENST00000375023	NM_004557.3	1210	Ccc/Acc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859649	151859649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	55	454	0	ENST00000262189.6:c.11013G>T	p.Met3671Ile	p.M3671I	ENST00000262189	NM_170606.2	3671	atG/atT																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372223	55372223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	93	290	0	ENST00000297316.4:c.913G>A	p.Ala305Thr	p.A305T	ENST00000297316	NM_022454.3	305	Gcg/Acg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8633315	8633315	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0034560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	53	400	0	ENST00000356435.5:c.352+2T>G		p.X118_splice	ENST00000356435		118																																																																																
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0034574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	502	592	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262639	16262639	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	211	314	0	ENST00000375759.3:c.9904C>G	p.Leu3302Val	p.L3302V	ENST00000375759	NM_015001.2	3302	Ctg/Gtg																																																																															
INSR	3643	MSKCC	GRCh37	19	7142889	7142889	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	223	632	0	ENST00000302850.5:c.2480A>G	p.Gln827Arg	p.Q827R	ENST00000302850	NM_000208.2	827	cAg/cGg																																																																															
CDK6	1021	MSKCC	GRCh37	7	92244459	92244459	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	118	322	0	ENST00000265734.4:c.976G>C	p.Ala326Pro	p.A326P	ENST00000265734	NM_001259.6	326	Gcc/Ccc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0034578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	20	566	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	11	348	0	ENST00000263967.3:c.3127A>T	p.Met1043Leu	p.M1043L	ENST00000263967	NM_006218.2	1043	Atg/Ttg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0034578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	242	649	1	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
RARA	5914	MSKCC	GRCh37	17	38512309	38512309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	59	634	0	ENST00000254066.5:c.1220C>A	p.Pro407Gln	p.P407Q	ENST00000254066	NM_000964.3	407	cCg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0034581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	219	272	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
FLT3	2322	MSKCC	GRCh37	13	28578214	28578214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1305	111	535	1	ENST00000241453.7:c.2957C>T	p.Pro986Leu	p.P986L	ENST00000241453	NM_004119.2	986	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0034581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	458	684	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39321517	39321517	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	96	492	0	ENST00000373001.3:c.504C>A	p.Asn168Lys	p.N168K	ENST00000373001	NM_022157.3	168	aaC/aaA																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	42	217	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0034640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	256	658	1	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112174998	112174999	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0034640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	24	165	0	ENST00000257430.4:c.3709_3710del	p.Gln1237GlufsTer2	p.Q1237Efs*2	ENST00000257430	NM_000038.5	1236	gCA/g																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115415	115115415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	119	644	0	ENST00000257566.3:c.911G>A	p.Arg304Gln	p.R304Q	ENST00000257566	NM_016569.3	304	cGg/cAg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57480442	57480442	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	92	233	0	ENST00000371085.3:c.437T>C	p.Phe146Ser	p.F146S	ENST00000371085	NM_000516.4	146	tTc/tCc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134977891	134977891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	36	435	0	ENST00000398015.3:c.2884C>T	p.Gln962Ter	p.Q962*	ENST00000398015	NM_004441.4	962	Cag/Tag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53231130	53231130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	183	506	0	ENST00000375401.3:c.1772G>A	p.Gly591Glu	p.G591E	ENST00000375401	NM_004187.3	591	gGa/gAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0034646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	112	259	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578446	7578446	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	412	714	0	ENST00000269305.4:c.484A>T	p.Ile162Phe	p.I162F	ENST00000269305	NM_001126112.2	162	Atc/Ttc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98220390	98220390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	197	360	0	ENST00000331920.6:c.3073C>T	p.Arg1025Cys	p.R1025C	ENST00000331920	NM_000264.3	1025	Cgc/Tgc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986936	36986936	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	3359	518	0	ENST00000354822.5:c.753G>C	p.Lys251Asn	p.K251N	ENST00000354822	NM_001079668.2	251	aaG/aaC																																																																															
DICER1	23405	MSKCC	GRCh37	14	95598885	95598885	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	55	369	0	ENST00000343455.3:c.274A>C	p.Asn92His	p.N92H	ENST00000343455	NM_177438.2	92	Aat/Cat																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66520161	66520161	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	257	520	0	ENST00000358598.2:c.445A>G	p.Ile149Val	p.I149V	ENST00000358598	NM_212471.2	149	Att/Gtt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602758	10602758	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	458	809	1	ENST00000171111.5:c.820del	p.His274ThrfsTer3	p.H274Tfs*3	ENST00000171111	NM_203500.1	274	Cac/ac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40710527	40710527	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	281	572	0	ENST00000373198.4:c.4324A>G	p.Thr1442Ala	p.T1442A	ENST00000373198	NM_133170.3	1442	Acc/Gcc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143094821	143094821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	60	367	0	ENST00000262992.4:c.1323C>A	p.Asp441Glu	p.D441E	ENST00000262992	NM_001101669.1	441	gaC/gaA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0034652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	61	296	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0034652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1136	108	960	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																															
CDH1	999	MSKCC	GRCh37	16	68853221	68853221	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	85	547	2	ENST00000261769.5:c.1605del	p.Asn536IlefsTer21	p.N536Ifs*21	ENST00000261769	NM_004360.3	535	aTt/at																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639252	3639252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	125	846	0	ENST00000294008.3:c.4387G>A	p.Asp1463Asn	p.D1463N	ENST00000294008	NM_032444.2	1463	Gac/Aac																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096625	178096625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	58	397	0	ENST00000397062.3:c.706G>A	p.Glu236Lys	p.E236K	ENST00000397062	NM_006164.4	236	Gaa/Aaa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686247	30686247	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	59	371	0	ENST00000359013.4:c.178G>C	p.Asp60His	p.D60H	ENST00000359013	NM_001024847.2	60	Gac/Cac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139403373	139403373	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	106	773	0	ENST00000277541.6:c.3120C>A	p.Cys1040Ter	p.C1040*	ENST00000277541	NM_017617.3	1040	tgC/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	298	515	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0034670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	205	746	2	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843595	156843595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139875058		P-0034670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	165	893	0	ENST00000524377.1:c.1021G>A	p.Val341Met	p.V341M	ENST00000524377	NM_002529.3	341	Gtg/Atg																																																																															
CCND3	896	MSKCC	GRCh37	6	41903745	41903746	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	51	699	0	ENST00000372991.4:c.811dupC	p.Arg271ProfsTer53	p.R271Pfs*53	ENST00000372991	NM_001760.3	271	cgg/cCgg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061679	38061679	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	23	272	0	ENST00000250448.2:c.310A>T	p.Met104Leu	p.M104L	ENST00000250448	NM_004496.3	104	Atg/Ttg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89345514	89345514	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	60	429	0	ENST00000301030.4:c.7436A>T	p.Asp2479Val	p.D2479V	ENST00000301030	NM_001256183.1	2479	gAc/gTc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99170818	99170825	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTCCAA	GCCTCCAA	-			P-0034670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	60	548	0	ENST00000074304.5:c.1448_1455del	p.Ala483GlyfsTer7	p.A483Gfs*7	ENST00000074304	NM_001134224.1	483	GCCTCCAAg/g																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143350324	143350324	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0034670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	66	255	0	ENST00000262992.4:c.136+2T>C		p.X46_splice	ENST00000262992	NM_001101669.1	46																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67589553	67589585	+	inframe_deletion	In_Frame_Del	DEL	AAGATAATATTGAAGCTGTAGGGAAAAAATTAC	AAGATAATATTGAAGCTGTAGGGAAAAAATTAC	-			P-0034670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	59	206	0	ENST00000274335.5:c.1317_1349del	p.Glu439_His450delinsAsp	p.E439_H450delinsD	ENST00000274335		439	gAAGATAATATTGAAGCTGTAGGGAAAAAATTACat/gat																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106515237	106515237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	88	364	1	ENST00000359195.3:c.2380G>A	p.Gly794Arg	p.G794R	ENST00000359195	NM_002649.2	794	Gga/Aga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0034702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	617	379	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741688	17741688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	160	406	2	ENST00000250003.3:c.359G>A	p.Arg120His	p.R120H	ENST00000250003	NM_002478.4	120	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576865	7576865	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0034702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	243	578	0	ENST00000269305.4:c.981T>A	p.Tyr327Ter	p.Y327*	ENST00000269305	NM_001126112.2	327	taT/taA																																																																															
LATS2	26524	MSKCC	GRCh37	13	21555610	21555610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	348	495	1	ENST00000382592.4:c.2660G>A	p.Arg887His	p.R887H	ENST00000382592	NM_014572.2	887	cGc/cAc																																																																															
RB1	5925	MSKCC	GRCh37	13	48937025	48937025	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0034702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	253	279	0	ENST00000267163.4:c.793A>T	p.Lys265Ter	p.K265*	ENST00000267163	NM_000321.2	265	Aaa/Taa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643743	52643743	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	218	570	0	ENST00000394830.3:c.2153A>G	p.Tyr718Cys	p.Y718C	ENST00000394830	NM_018313.4	718	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	104	479	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0034709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	131	656	2	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
SETD8	387893	MSKCC	GRCh37	12	123875214	123875214	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	75	352	1	ENST00000330479.4:c.170A>G	p.Tyr57Cys	p.Y57C	ENST00000330479	NM_020382.3	57	tAc/tGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425218	49425219	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGCTCTTCCCGAGGTTCCTGCT			P-0034709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1316	105	919	0	ENST00000301067.7:c.13247_13269dup	p.Cys4424SerfsTer16	p.C4424Sfs*16	ENST00000301067	NM_003482.3	4423	-/AGCAGGAACCTCGGGAAGAGCCA																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134885835	134885835	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	43	464	0	ENST00000398015.3:c.1746C>A	p.Tyr582Ter	p.Y582*	ENST00000398015	NM_004441.4	582	taC/taA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0034713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	491	739	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0034713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	257	312	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631132	69631132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	246	623	0	ENST00000334134.2:c.280G>A	p.Gly94Arg	p.G94R	ENST00000334134	NM_005247.2	94	Ggg/Agg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117674218	117674218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	51	597	0	ENST00000368508.3:c.4256C>T	p.Ser1419Phe	p.S1419F	ENST00000368508	NM_002944.2	1419	tCc/tTc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176050348	176050348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	11	421	0	ENST00000367669.3:c.1217G>T	p.Arg406Leu	p.R406L	ENST00000367669	NM_022457.5	406	cGa/cTa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17946849	17946849	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	130	552	0	ENST00000458235.1:c.1798C>T	p.Gln600Ter	p.Q600*	ENST00000458235	NM_000215.3	600	Cag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251982	153251986	+	frameshift_variant	Frame_Shift_Del	DEL	TTACT	TTACT	-			P-0034713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	35	622	0	ENST00000281708.4:c.1020_1024del	p.Lys340AsnfsTer21	p.K340Nfs*21	ENST00000281708	NM_033632.3	340	aaAGTAAta/aata																																																																															
RAD51	5888	MSKCC	GRCh37	15	41001285	41001285	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	53	455	0	ENST00000267868.3:c.406A>G	p.Ile136Val	p.I136V	ENST00000267868	NM_002875.4	136	Atc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577122	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0034736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	184	588	1	ENST00000269305.4:c.816_817delinsTT	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	272	gtGCgt/gtTTgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	46	442	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0034773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	9	240	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578213	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	77	552	0	ENST00000269305.4:c.636dup	p.Arg213SerfsTer3	p.R213Sfs*3	ENST00000269305	NM_001126112.2	212	-/T																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713582	30713583	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAT			P-0034773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	43	403	0	ENST00000359013.4:c.985_988dup	p.Leu330HisfsTer8	p.L330Hfs*8	ENST00000359013	NM_001024847.2	328	aac/aACATac																																																																															
AR	367	MSKCC	GRCh37	X	66931306	66931306	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	11	236	0	ENST00000374690.3:c.1948A>G	p.Thr650Ala	p.T650A	ENST00000374690	NM_000044.3	650	Acc/Gcc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0034774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	123	414	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175529	112175530	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGTAA			P-0034774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	96	344	0	ENST00000257430.4:c.4240_4244dupGTAAG	p.Ser1415ArgfsTer2	p.S1415Rfs*2	ENST00000257430	NM_000038.5	1413	atg/atGGTAAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs28934873		P-0034777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	462	819	0	ENST00000269305.4:c.398T>C	p.Met133Thr	p.M133T	ENST00000269305	NM_001126112.2	133	aTg/aCg																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27777915	27777915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	39	351	0	ENST00000369163.2:c.64G>A	p.Ala22Thr	p.A22T	ENST00000369163	NM_003536.2	22	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0034782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	266	328	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0034782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	104	338	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664915	138664915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	26	252	0	ENST00000330315.3:c.650C>T	p.Ser217Phe	p.S217F	ENST00000330315	NM_023067.3	217	tCc/tTc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114905857	114905857	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0034782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	314	502	0	ENST00000543371.1:c.875+1G>C		p.X292_splice	ENST00000543371	NM_001198531.1	292																																																																																
PHOX2B	8929	MSKCC	GRCh37	4	41748146	41748146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	21	348	0	ENST00000226382.2:c.623G>T	p.Cys208Phe	p.C208F	ENST00000226382	NM_003924.3	208	tGc/tTc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	68	469	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	57	313	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584514	48584514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	50	631	1	ENST00000342988.3:c.692delG	p.Gly231AlafsTer10	p.G231Afs*10	ENST00000342988	NM_005359.5	229	ctG/ct																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	146	430	0	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806176	1806176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	346	773	0	ENST00000260795.2:c.1195C>T	p.Arg399Cys	p.R399C	ENST00000260795		399	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	40	671	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
ALK	238	MSKCC	GRCh37	2	29456453	29456453	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	237	667	0	ENST00000389048.3:c.2465del	p.Gly822ValfsTer9	p.G822Vfs*9	ENST00000389048	NM_004304.4	822	gGt/gt																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871052	12871053	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	64	226	0	ENST00000228872.4:c.285dup	p.Lys96GlnfsTer29	p.K96Qfs*29	ENST00000228872	NM_004064.3	93	-/C																																																																															
AXL	558	MSKCC	GRCh37	19	41744385	41744385	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	185	594	0	ENST00000301178.4:c.1010delC	p.Pro337LeufsTer29	p.P337Lfs*29	ENST00000301178	NM_021913.4	335	ggC/gg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867149	45867149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	251	714	0	ENST00000391945.4:c.970C>T	p.Arg324Cys	p.R324C	ENST00000391945	NM_000400.3	324	Cgc/Tgc																																																																															
TP63	8626	MSKCC	GRCh37	3	189586503	189586503	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs143591434		P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	124	299	0	ENST00000264731.3:c.1127G>A	p.Arg376His	p.R376H	ENST00000264731	NM_003722.4	376	cGc/cAc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321390	1321390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	41	380	1	ENST00000381566.1:c.365C>T	p.Pro122Leu	p.P122L	ENST00000381566		122	cCg/cTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118895	115118895	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	205	433	0	ENST00000257566.3:c.446A>G	p.Tyr149Cys	p.Y149C	ENST00000257566	NM_016569.3	149	tAc/tGc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919007	50919007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	234	619	0	ENST00000440232.2:c.2744C>T	p.Ala915Val	p.A915V	ENST00000440232	NM_002691.3	915	gCg/gTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508856	106508856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	157	424	0	ENST00000359195.3:c.850G>A	p.Glu284Lys	p.E284K	ENST00000359195	NM_002649.2	284	Gaa/Aaa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905288	50905288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	53	861	0	ENST00000440232.2:c.496C>T	p.Arg166Trp	p.R166W	ENST00000440232	NM_002691.3	166	Cgg/Tgg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730074	41730074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	71	551	0	ENST00000242208.4:c.455G>A	p.Arg152His	p.R152H	ENST00000242208	NM_002192.2	152	cGt/cAt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9783245	9783245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	253	556	0	ENST00000377346.4:c.2489G>A	p.Arg830His	p.R830H	ENST00000377346	NM_005026.3	830	cGt/cAt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259480	16259480	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	181	411	2	ENST00000375759.3:c.6750del	p.Ala2251GlnfsTer102	p.A2251Qfs*102	ENST00000375759	NM_015001.2	2249	Ccc/cc																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346220	152346220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	237	584	4	ENST00000359321.1:c.350del	p.Leu117TrpfsTer17	p.L117Wfs*17	ENST00000359321	NM_005431.1	117	tTg/tg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200267	138200267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	62	442	0	ENST00000237289.4:c.1685G>A	p.Arg562His	p.R562H	ENST00000237289	NM_001270507.1	562	cGt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438211	49438211	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	86	810	1	ENST00000301067.7:c.5058delA	p.Lys1686AsnfsTer36	p.K1686Nfs*36	ENST00000301067	NM_003482.3	1686	aaA/aa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137075	64137075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	241	443	1	ENST00000334205.4:c.1586G>A	p.Arg529His	p.R529H	ENST00000334205	NM_003942.2	529	cGc/cAc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639245	3639245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	143	870	0	ENST00000294008.3:c.4394G>A	p.Arg1465His	p.R1465H	ENST00000294008	NM_032444.2	1465	cGt/cAt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15383774	15383774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	226	637	0	ENST00000263377.2:c.137C>T	p.Pro46Leu	p.P46L	ENST00000263377	NM_058243.2	46	cCg/cTg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206651144	206651144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	338	728	0	ENST00000367120.3:c.754C>T	p.Arg252Trp	p.R252W	ENST00000367120	NM_014002.3	252	Cgg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100975	41100975	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	193	537	1	ENST00000373198.4:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000373198	NM_133170.3	461	Cga/Tga																																																																															
STAT3	6774	MSKCC	GRCh37	17	40498610	40498610	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	231	471	0	ENST00000264657.5:c.250C>T	p.Arg84Ter	p.R84*	ENST00000264657	NM_139276.2	84	Cga/Tga																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793797	89793799	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	189	480	0	ENST00000336032.3:c.868_870del	p.Pro290del	p.P290del	ENST00000336032	NM_006813.2	289	tCTCct/tct																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291061	10291061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	249	655	1	ENST00000340748.4:c.410C>T	p.Thr137Met	p.T137M	ENST00000340748		137	aCg/aTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692783	89692783	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	104	416	0	ENST00000371953.3:c.270delT	p.Phe90LeufsTer9	p.F90Lfs*9	ENST00000371953	NM_000314.4	89	ccT/cc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11269500	11269500	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	144	447	0	ENST00000361445.4:c.3670G>T	p.Asp1224Tyr	p.D1224Y	ENST00000361445	NM_004958.3	1224	Gat/Tat																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262237	16262237	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	111	213	0	ENST00000375759.3:c.9502C>T	p.Arg3168Ter	p.R3168*	ENST00000375759	NM_015001.2	3168	Cga/Tga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325840	65325840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	185	420	2	ENST00000342505.4:c.1282G>A	p.Ala428Thr	p.A428T	ENST00000342505	NM_002227.2	428	Gcc/Acc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206667311	206667311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	220	612	0	ENST00000367120.3:c.2104C>T	p.Arg702Cys	p.R702C	ENST00000367120	NM_014002.3	702	Cgc/Tgc																																																																															
FH	2271	MSKCC	GRCh37	1	241675280	241675280	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	199	517	0	ENST00000366560.3:c.542T>C	p.Val181Ala	p.V181A	ENST00000366560	NM_000143.3	181	gTt/gCt																																																																															
CCND1	595	MSKCC	GRCh37	11	69465887	69465887	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	220	548	0	ENST00000227507.2:c.725A>G	p.Asp242Gly	p.D242G	ENST00000227507	NM_053056.2	242	gAc/gGc																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518052	69518052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	250	750	3	ENST00000294312.3:c.313G>A	p.Ala105Thr	p.A105T	ENST00000294312	NM_005117.2	105	Gcc/Acc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939788	71939788	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	76	689	0	ENST00000298229.2:c.419del	p.Pro140ArgfsTer39	p.P140Rfs*39	ENST00000298229	NM_001567.3	139	Ccc/cc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	402077	402077	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	147	584	0	ENST00000399788.2:c.4714A>G	p.Lys1572Glu	p.K1572E	ENST00000399788	NM_001042603.1	1572	Aaa/Gaa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12037492	12037492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	137	334	0	ENST00000396373.4:c.1123G>A	p.Gly375Arg	p.G375R	ENST00000396373	NM_001987.4	375	Gga/Aga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424729	49424729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	342	647	0	ENST00000301067.7:c.13618C>T	p.Arg4540Trp	p.R4540W	ENST00000301067	NM_003482.3	4540	Cgg/Tgg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562904	21562904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	284	570	1	ENST00000382592.4:c.1015G>A	p.Ala339Thr	p.A339T	ENST00000382592	NM_014572.2	339	Gcc/Acc																																																																															
CD276	80381	MSKCC	GRCh37	15	73994859	73994859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	12	40	0	ENST00000318443.5:c.343G>A	p.Ala115Thr	p.A115T	ENST00000318443	NM_001024736.1	115	Gcg/Acg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	341247	341247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	321	678	0	ENST00000262320.3:c.2237G>A	p.Cys746Tyr	p.C746Y	ENST00000262320	NM_003502.3	746	tGc/tAc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56867129	56867129	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	198	504	0	ENST00000308159.5:c.1348G>A	p.Glu450Lys	p.E450K	ENST00000308159	NM_014669.4	450	Gag/Aag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821148	72821148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	279	642	0	ENST00000268489.5:c.11027C>T	p.Ala3676Val	p.A3676V	ENST00000268489	NM_006885.3	3676	gCg/gTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993669	72993669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	94	598	0	ENST00000268489.5:c.376G>A	p.Val126Met	p.V126M	ENST00000268489	NM_006885.3	126	Gtg/Atg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210735	5210735	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	285	752	0	ENST00000357368.4:c.5316T>G	p.Asn1772Lys	p.N1772K	ENST00000357368	NM_002850.3	1772	aaT/aaG																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10260302	10260302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	184	520	0	ENST00000340748.4:c.2365G>A	p.Gly789Arg	p.G789R	ENST00000340748		789	Ggg/Agg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11022897	11022897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1132	159	867	1	ENST00000327064.4:c.596C>T	p.Ser199Leu	p.S199L	ENST00000327064	NM_199141.1	199	tCg/tTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130307	11130307	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1213692147		P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	249	529	1	ENST00000344626.4:c.2546G>A	p.Arg849Gln	p.R849Q	ENST00000344626	NM_003072.3	849	cGg/cAg																																																																															
CIC	23152	MSKCC	GRCh37	19	42797191	42797191	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587778202		P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	146	828	1	ENST00000575354.2:c.3553G>A	p.Ala1185Thr	p.A1185T	ENST00000575354	NM_015125.3	1185	Gcc/Acc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714732	52714732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	110	597	0	ENST00000322088.6:c.490G>A	p.Ala164Thr	p.A164T	ENST00000322088	NM_014225.5	164	Gcg/Acg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47709983	47709985	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	148	287	0	ENST00000233146.2:c.2704_2706del	p.Glu902del	p.E902del	ENST00000233146	NM_000251.2	900	tcAGAa/tca																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62319093	62319093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	266	735	0	ENST00000508582.2:c.1523C>T	p.Pro508Leu	p.P508L	ENST00000508582		508	cCg/cTg																																																																															
NF2	4771	MSKCC	GRCh37	22	30069292	30069292	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	203	628	2	ENST00000338641.4:c.1160del	p.Lys387ArgfsTer39	p.K387Rfs*39	ENST00000338641	NM_000268.3	386	gAa/ga																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434123	12434123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	129	373	0	ENST00000287820.6:c.491G>A	p.Arg164Gln	p.R164Q	ENST00000287820	NM_015869.4	164	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178943828	178943828	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	80	351	0	ENST00000263967.3:c.2495G>A	p.Arg832Gln	p.R832Q	ENST00000263967	NM_006218.2	832	cGa/cAa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980598	1980598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	223	474	0	ENST00000382891.5:c.4060C>T	p.Arg1354Trp	p.R1354W	ENST00000382891	NM_133335.3	1354	Cgg/Tgg																																																																															
TET2	54790	MSKCC	GRCh37	4	106156519	106156519	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	155	368	0	ENST00000380013.4:c.1420C>A	p.Pro474Thr	p.P474T	ENST00000380013	NM_001127208.2	474	Ccg/Acg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38960610	38960610	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	95	221	0	ENST00000357387.3:c.1741del	p.Tyr581ThrfsTer24	p.Y581Tfs*24	ENST00000357387	NM_152756.3	581	Tac/ac																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450251	50450251	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	53	458	0	ENST00000331340.3:c.435C>G	p.Phe145Leu	p.F145L	ENST00000331340	NM_006060.4	145	ttC/ttG																																																																															
MET	4233	MSKCC	GRCh37	7	116340043	116340043	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	106	281	0	ENST00000397752.3:c.908del	p.Lys303ArgfsTer31	p.K303Rfs*31	ENST00000397752	NM_000245.2	302	gAa/ga																																																																															
EZH2	2146	MSKCC	GRCh37	7	148515092	148515092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	264	532	0	ENST00000320356.2:c.1117C>A	p.Pro373Thr	p.P373T	ENST00000320356	NM_004456.4	373	Ccc/Acc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162894	38162894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	98	639	0	ENST00000317025.8:c.2312G>A	p.Gly771Glu	p.G771E	ENST00000317025	NM_023034.1	771	gGg/gAg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187060	38187060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	222	856	0	ENST00000317025.8:c.1417G>A	p.Ala473Thr	p.A473T	ENST00000317025	NM_023034.1	473	Gcg/Acg																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006101	22006101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	230	549	0	ENST00000276925.6:c.302G>A	p.Arg101Gln	p.R101Q	ENST00000276925	NM_004936.3	101	cGg/cAg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564080	139564080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	160	689	0	ENST00000308874.7:c.220C>T	p.Arg74Cys	p.R74C	ENST00000308874		74	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	86	630	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575505	64575505	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs607969		P-0034847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	10	512	0	ENST00000337652.1:c.527G>A	p.Arg176Gln	p.R176Q	ENST00000337652	NM_130803.2	176	cGg/cAg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170271	32170271	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148269570		P-0034847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	28	749	0	ENST00000375023.3:c.3337C>T	p.Arg1113Cys	p.R1113C	ENST00000375023	NM_004557.3	1113	Cgc/Tgc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279674	123279674	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	25	348	0	ENST00000358487.5:c.758C>G	p.Pro253Arg	p.P253R	ENST00000358487	NM_000141.4	253	cCt/cGt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844694	156844697	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CCAG	CCAG	-			P-0034847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	23	845	0	ENST00000524377.1:c.1252-4_1252-1del		p.X418_splice	ENST00000524377	NM_002529.3	418																																																																																
TET1	80312	MSKCC	GRCh37	10	70332900	70332900	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	36	707	0	ENST00000373644.4:c.805C>A	p.Gln269Lys	p.Q269K	ENST00000373644	NM_030625.2	269	Cag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108098539	108098539	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	58	366	0	ENST00000278616.4:c.109C>A	p.Pro37Thr	p.P37T	ENST00000278616	NM_000051.3	37	Cct/Act																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031982	10031982	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	16	667	1	ENST00000330684.3:c.841T>C	p.Tyr281His	p.Y281H	ENST00000330684	NM_001134407.1	281	Tac/Cac																																																																															
ERG	2078	MSKCC	GRCh37	21	39755675	39755675	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0034847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	14	780	1	ENST00000288319.7:c.1090A>T	p.Lys364Ter	p.K364*	ENST00000288319	NM_182918.3	364	Aag/Tag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	155	541	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	172	567	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
WT1	7490	MSKCC	GRCh37	11	32417910	32417910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	123	528	1	ENST00000332351.3:c.1142C>T	p.Ser381Leu	p.S381L	ENST00000332351	NM_024426.4	381	tCg/tTg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223532	2223532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	136	778	0	ENST00000326181.6:c.1063C>T	p.Arg355Trp	p.R355W	ENST00000326181	NM_032271.2	355	Cgg/Tgg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1632084	1632084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	131	725	1	ENST00000344749.5:c.251C>T	p.Ser84Leu	p.S84L	ENST00000344749	NM_001136139.2	84	tCg/tTg																																																																															
MET	4233	MSKCC	GRCh37	7	116340339	116340339	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0034850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	87	262	0	ENST00000397752.3:c.1200+1G>C		p.X400_splice	ENST00000397752	NM_000245.2	400																																																																																
INSR	3643	MSKCC	GRCh37	19	7126648	7126648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	34	520	0	ENST00000302850.5:c.2960C>T	p.Pro987Leu	p.P987L	ENST00000302850	NM_000208.2	987	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574004	7574005	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	AACATCTCGAAGCGCTCAC			P-0034902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	166	690	0	ENST00000269305.4:c.1004_1022dup	p.Phe341LeufsTer2	p.F341Lfs*2	ENST00000269305	NM_001126112.2	341	ttc/ttGTGAGCGCTTCGAGATGTTc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026744	6026744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	50	404	0	ENST00000265849.7:c.1652G>A	p.Cys551Tyr	p.C551Y	ENST00000265849	NM_000535.5	551	tGc/tAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	120	387	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108126889	108126943	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TATACTAAATTATTTATGAAATATATATATTTTTATTTGTGGTTTACTTTAAGAT	TATACTAAATTATTTATGAAATATATATATTTTTATTTGTGGTTTACTTTAAGAT	-			P-0034928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	31	182	0	ENST00000278616.4:c.2125-51_2128del		p.X709_splice	ENST00000278616	NM_000051.3	709																																																																																
MAX	4149	MSKCC	GRCh37	14	65544669	65544674	+	inframe_deletion	In_Frame_Del	DEL	TCAATA	TCAATA	-			P-0034928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	74	680	0	ENST00000358664.4:c.252_257del	p.Ile85_Asp86del	p.I85_D86del	ENST00000358664	NM_002382.4	84	gaTATTGAc/gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578224	7578224	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	71	556	0	ENST00000269305.4:c.625del	p.Arg209GlufsTer38	p.R209Efs*38	ENST00000269305	NM_001126112.2	209	Aga/ga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176684069	176684069	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	46	619	0	ENST00000439151.2:c.4883T>C	p.Met1628Thr	p.M1628T	ENST00000439151	NM_022455.4	1628	aTg/aCg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066503	94066503	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	26	297	0	ENST00000369303.4:c.1256A>T	p.Asn419Ile	p.N419I	ENST00000369303	NM_004440.3	419	aAt/aTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974775	21974775	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	40	230	0	ENST00000304494.5:c.52A>C	p.Thr18Pro	p.T18P	ENST00000304494	NM_000077.4	18	Acg/Ccg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	173	435	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0034937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	391	766	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346365	73346365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	139	396	0	ENST00000377767.4:c.1435G>T	p.Asp479Tyr	p.D479Y	ENST00000377767	NM_014953.3	479	Gac/Tac																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013744	12013744	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0034937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	84	274	0	ENST00000353533.5:c.685+1G>T		p.X229_splice	ENST00000353533	NM_003010.3	229																																																																																
RARA	5914	MSKCC	GRCh37	17	38511668	38511668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	84	406	0	ENST00000254066.5:c.1166C>T	p.Ala389Val	p.A389V	ENST00000254066	NM_000964.3	389	gCc/gTc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686391	30686391	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	164	327	0	ENST00000359013.4:c.322G>T	p.Val108Phe	p.V108F	ENST00000359013	NM_001024847.2	108	Gtc/Ttc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31401654	31401667	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	ATCTGGGGAAAATT	ATCTGGGGAAAATT	-			P-0034937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	77	410	1	ENST00000344624.3:c.3997_4010del	p.Asn1333GlyfsTer31	p.N1333Gfs*31	ENST00000344624		1333	AATTTTCCCCAGATg/g																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285901	38285901	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	129	516	0	ENST00000425967.3:c.510G>C	p.Glu170Asp	p.E170D	ENST00000425967	NM_001174067.1	170	gaG/gaC																																																																															
JAK2	3717	MSKCC	GRCh37	9	5073738	5073738	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	161	367	2	ENST00000381652.3:c.1817A>T	p.His606Leu	p.H606L	ENST00000381652	NM_004972.3	606	cAc/cTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0034970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	41	507	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0034970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	52	428	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0034970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	104	580	1	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604656	48604656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	42	294	0	ENST00000342988.3:c.1478A>G	p.Asp493Gly	p.D493G	ENST00000342988	NM_005359.5	493	gAt/gGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	49	437	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	131	619	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913535		P-0035002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	122	401	0	ENST00000256078.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000256078	NM_033360.2	13	Ggc/Cgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1219336	1219336	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	167	617	0	ENST00000326873.7:c.388G>T	p.Glu130Ter	p.E130*	ENST00000326873	NM_000455.4	130	Gag/Tag																																																																															
LMO1	4004	MSKCC	GRCh37	11	8246235	8246235	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	90	486	0	ENST00000335790.3:c.399C>A	p.Asn133Lys	p.N133K	ENST00000335790	NM_002315.2	133	aaC/aaA																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125497701	125497702	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0035002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	103	475	0	ENST00000428830.2:c.265_266delinsTT	p.Gly89Leu	p.G89L	ENST00000428830	NM_001114121.2	89	GGa/TTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398267	25398267	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	139	447	0	ENST00000256078.4:c.52G>T	p.Ala18Ser	p.A18S	ENST00000256078	NM_033360.2	18	Gcc/Tcc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437110	110437110	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	25	74	0	ENST00000375856.3:c.1291A>T	p.Met431Leu	p.M431L	ENST00000375856	NM_003749.2	431	Atg/Ttg																																																																															
BLM	641	MSKCC	GRCh37	15	91341555	91341555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	126	513	0	ENST00000355112.3:c.3346G>A	p.Asp1116Asn	p.D1116N	ENST00000355112	NM_000057.2	1116	Gac/Aac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602890	10602890	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	198	746	0	ENST00000171111.5:c.688del	p.Thr230ProfsTer8	p.T230Pfs*8	ENST00000171111	NM_203500.1	230	Acc/cc																																																																															
EP300	2033	MSKCC	GRCh37	22	41556727	41556727	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0035002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	72	325	0	ENST00000263253.7:c.3671+1G>T		p.X1224_splice	ENST00000263253	NM_001429.3	1224																																																																																
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0035018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	72	506	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101612	27101612	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	50	572	0	ENST00000324856.7:c.4899del	p.Met1634Ter	p.M1634*	ENST00000324856	NM_006015.4	1632	Ccc/cc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100375	27100380	+	inframe_deletion	In_Frame_Del	DEL	CAACAG	CAACAG	-			P-0035018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	58	396	0	ENST00000324856.7:c.4095_4100del	p.Gln1366_Gln1367del	p.Q1366_Q1367del	ENST00000324856	NM_006015.4	1363	CAACAG/-																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115275311	115275311	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	321	806	0	ENST00000438362.2:c.1102A>G	p.Thr368Ala	p.T368A	ENST00000438362	NM_001242891.1	368	Aca/Gca																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577567	64577568	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0035025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	146	308	0	ENST00000337652.1:c.14_15del	p.Ala5GlyfsTer111	p.A5Gfs*111	ENST00000337652	NM_130803.2	5	gCC/g																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939458	71939469	+	inframe_deletion	In_Frame_Del	DEL	CCCAACCAGGGC	CCCAACCAGGGC	-			P-0035025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	337	1077	0	ENST00000298229.2:c.314_325del	p.Pro105_Gly108del	p.P105_G108del	ENST00000298229	NM_001567.3	105	CCCAACCAGGGC/-																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992792	72992792	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	170	662	1	ENST00000268489.5:c.1253del	p.Val418AlafsTer39	p.V418Afs*39	ENST00000268489	NM_006885.3	418	gTc/gc																																																																															
ATRX	546	MSKCC	GRCh37	X	76912114	76912117	+	frameshift_variant	Frame_Shift_Del	DEL	AATC	AATC	-			P-0035025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	150	478	0	ENST00000373344.5:c.4147_4150del	p.Asp1383PhefsTer106	p.D1383Ffs*106	ENST00000373344	NM_000489.3	1383	GATTtt/tt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0035068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	111	354	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0035068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	107	313	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
CDH1	999	MSKCC	GRCh37	16	68867298	68867299	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0035068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	156	538	0	ENST00000261769.5:c.2545_2546del	p.Asn849LeufsTer11	p.N849Lfs*11	ENST00000261769	NM_004360.3	849	AAc/c																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816483	32816483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	228	852	0	ENST00000354258.4:c.1692G>T	p.Gln564His	p.Q564H	ENST00000354258	NM_000593.5	564	caG/caT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152008896	152008897	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAGG			P-0035068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	118	411	0	ENST00000262189.6:c.722_725dup	p.Leu242PhefsTer4	p.L242Ffs*4	ENST00000262189	NM_170606.2	242	tta/ttCCTTa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696601	47696601	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	109	486	0	ENST00000347630.2:c.347C>G	p.Ala116Gly	p.A116G	ENST00000347630	NM_001007230.1	116	gCt/gGt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1961360	1961360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	213	607	1	ENST00000382891.5:c.3148G>A	p.Glu1050Lys	p.E1050K	ENST00000382891	NM_133335.3	1050	Gag/Aag																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143114262	143114262	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	84	419	0	ENST00000262992.4:c.1159A>G	p.Arg387Gly	p.R387G	ENST00000262992	NM_001101669.1	387	Aga/Gga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176618884	176618884	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0035070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	86	441	0	ENST00000439151.2:c.928-1G>A		p.X310_splice	ENST00000439151	NM_022455.4	310																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0035072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	538	704	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879604	37879604	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1196929947		P-0035072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	634	899	0	ENST00000269571.5:c.1979G>A	p.Gly660Asp	p.G660D	ENST00000269571		660	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578251	7578251	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	246	708	0	ENST00000269305.4:c.598A>T	p.Asn200Tyr	p.N200Y	ENST00000269305	NM_001126112.2	200	Aat/Tat																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247174	153247174	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	111	325	0	ENST00000281708.4:c.1628G>C	p.Arg543Thr	p.R543T	ENST00000281708	NM_033632.3	543	aGa/aCa																																																																															
APC	324	MSKCC	GRCh37	5	112175389	112175392	+	frameshift_variant	Frame_Shift_Del	DEL	TCAG	TCAG	GC			P-0035072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	88	273	1	ENST00000257430.4:c.4098_4101delinsGC	p.Gln1367HisfsTer7	p.Q1367Hfs*7	ENST00000257430	NM_000038.5	1366	gcTCAG/gcGC																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323002	31323002	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0035072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	226	842	0	ENST00000412585.2:c.896-2A>G		p.X299_splice	ENST00000412585	NM_005514.6	299																																																																																
ATRX	546	MSKCC	GRCh37	X	76849314	76849314	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	166	410	0	ENST00000373344.5:c.5962G>T	p.Ala1988Ser	p.A1988S	ENST00000373344	NM_000489.3	1988	Gct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	27	404	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578467	7578467	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1517	284	724	0	ENST00000269305.4:c.463A>C	p.Thr155Pro	p.T155P	ENST00000269305	NM_001126112.2	155	Acc/Ccc																																																																															
SRC	6714	MSKCC	GRCh37	20	36031750	36031750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	202	527	1	ENST00000358208.4:c.1579G>A	p.Glu527Lys	p.E527K	ENST00000358208		527	Gag/Aag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307414	118307416	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-			P-0035079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	10	17	0	ENST00000534358.1:c.200_202delCGG	p.Ala67del	p.A67del	ENST00000534358	NM_005933.3	63	GCG/-																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31395698	31395698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	136	356	0	ENST00000328111.2:c.2551G>A	p.Ala851Thr	p.A851T	ENST00000328111	NM_006892.3	851	Gca/Aca																																																																															
ATM	472	MSKCC	GRCh37	11	108235935	108235935	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs770641163		P-0035080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	114	409	0	ENST00000278616.4:c.8977C>T	p.Arg2993Ter	p.R2993*	ENST00000278616	NM_000051.3	2993	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	136	514	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434170	121434170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	308	692	1	ENST00000257555.6:c.1061C>A	p.Thr354Lys	p.T354K	ENST00000257555		354	aCg/aAg																																																																															
MGA	23269	MSKCC	GRCh37	15	42042345	42042345	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	120	530	0	ENST00000219905.7:c.6543del	p.Leu2182Ter	p.L2182*	ENST00000219905	NM_001164273.1	2180	ggC/gg																																																																															
NF1	4763	MSKCC	GRCh37	17	29679351	29679351	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	139	414	0	ENST00000358273.4:c.7535del	p.Gly2512AlafsTer11	p.G2512Afs*11	ENST00000358273	NM_001042492.2	2512	Ggc/gc																																																																															
ARAF	369	MSKCC	GRCh37	X	47428224	47428228	+	missense_variant	Missense_Mutation	ONP	ATGTG	ATGTG	GTGTT			P-0035080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	92	835	0	ENST00000377045.4:c.1184_1188delinsGTGTT	p.His395Arg	p.H395R	ENST00000377045	NM_001654.4	395	cATGTG/cGTGTT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	65	468	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0035083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	147	766	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	96	478	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs757274881		P-0035105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	294	932	1	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023258	27023265	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCGG	GGCGGCGG	C			P-0035105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	61	160	0	ENST00000324856.7:c.364_371delinsC	p.Gly122ProfsTer108	p.G122Pfs*108	ENST00000324856	NM_006015.4	122	GGCGGCGGc/Cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0035106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	336	713	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
ATR	545	MSKCC	GRCh37	3	142215244	142215244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	131	473	1	ENST00000350721.4:c.5857G>A	p.Ala1953Thr	p.A1953T	ENST00000350721	NM_001184.3	1953	Gct/Act																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959064	2959064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	334	668	1	ENST00000396946.4:c.2452C>T	p.Arg818Trp	p.R818W	ENST00000396946	NM_032415.4	818	Cgg/Tgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874945	151874945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	169	410	1	ENST00000262189.6:c.7593G>T	p.Met2531Ile	p.M2531I	ENST00000262189	NM_170606.2	2531	atG/atT																																																																															
APC	324	MSKCC	GRCh37	5	112175189	112175189	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	91	254	0	ENST00000257430.4:c.3899del	p.Asn1300IlefsTer5	p.N1300Ifs*5	ENST00000257430	NM_000038.5	1300	Aat/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0035119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	277	548	0	ENST00000269305.4:c.560-1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37866098	37866098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	583	670	0	ENST00000269571.5:c.607C>T	p.Arg203Cys	p.R203C	ENST00000269571		203	Cgc/Tgc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061113	38061185	+	frameshift_variant	Frame_Shift_Del	DEL	CTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCG	CTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCG	-			P-0035119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	434	110	1	ENST00000250448.2:c.804_876del	p.Cys268Ter	p.C268*	ENST00000250448	NM_004496.3	268	tgCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGCGGCCCTGAG/tg																																																																															
HGF	3082	MSKCC	GRCh37	7	81399235	81399249	+	inframe_deletion	In_Frame_Del	DEL	TGCAGGAGGACATGC	TGCAGGAGGACATGC	-			P-0035119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1206	193	596	0	ENST00000222390.5:c.39_53del	p.Gln13_Leu17del	p.Q13_L17del	ENST00000222390	NM_000601.4	13	caGCATGTCCTCCTGCAt/cat																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187288	38187288	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0035119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	90	744	0	ENST00000317025.8:c.1189A>T	p.Lys397Ter	p.K397*	ENST00000317025	NM_023034.1	397	Aaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	169	560	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0035165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	110	370	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578428	7578429	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	79	859	0	ENST00000269305.4:c.501_502insT	p.His168SerfsTer13	p.H168Sfs*13	ENST00000269305	NM_001126112.2	167	-/T																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099405	4099405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	44	724	0	ENST00000262948.5:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000262948	NM_030662.3	238	cGg/cAg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905462	50905462	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0035165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	251	809	0	ENST00000440232.2:c.590G>C	p.Ser197Thr	p.S197T	ENST00000440232	NM_002691.3	197	aGc/aCc																																																																															
EP300	2033	MSKCC	GRCh37	22	41547970	41547970	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	220	664	0	ENST00000263253.7:c.2951T>A	p.Val984Glu	p.V984E	ENST00000263253	NM_001429.3	984	gTg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112151191	112151191	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0035165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	124	395	0	ENST00000257430.4:c.836del		p.X279_splice	ENST00000257430	NM_000038.5	279																																																																																
AMER1	139285	MSKCC	GRCh37	X	63411813	63411813	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	264	454	0	ENST00000330258.3:c.1354del	p.Glu452AsnfsTer3	p.E452Nfs*3	ENST00000330258	NM_152424.3	452	Gaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0035170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	20	617	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
RB1	5925	MSKCC	GRCh37	13	49030403	49030403	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	159	372	0	ENST00000267163.4:c.1880del	p.Asn627MetfsTer16	p.N627Mfs*16	ENST00000267163	NM_000321.2	626	gcA/gc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157150448	157150448	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	220	497	0	ENST00000346085.5:c.1630C>G	p.Pro544Ala	p.P544A	ENST00000346085	NM_020732.3	544	Ccg/Gcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0035208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	351	684	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	255	482	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624107	89624283	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	GAGCGAGGGGCATCAGCTACCGCCAAGTCCAGAGCCATTTCCATCCTGCAGAAGAAGCCCCGCCACCAGCAGCTTCTGCCATCTCTCTCCTCCTTTTTCTTCAGCCACAGGCTCCCAGACATGACAGCCATCATCAAAGAGATCGTTAGCAGAAACAAAAGGAGATATCAAGAGGAT	GAGCGAGGGGCATCAGCTACCGCCAAGTCCAGAGCCATTTCCATCCTGCAGAAGAAGCCCCGCCACCAGCAGCTTCTGCCATCTCTCTCCTCCTTTTTCTTCAGCCACAGGCTCCCAGACATGACAGCCATCATCAAAGAGATCGTTAGCAGAAACAAAAGGAGATATCAAGAGGAT	-			P-0035208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	27	99	0	ENST00000371953.3:c.-119_58del		p.*40*	ENST00000371953	NM_000314.4	40																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38061006	38061033	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCCGGGGGCCGGCGCGCCCTCTAGCT	GGCCCGGGGGCCGGCGCGCCCTCTAGCT	-			P-0035208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	174	344	0	ENST00000250448.2:c.956_983del	p.Gln319ProfsTer22	p.Q319Pfs*22	ENST00000250448	NM_004496.3	319	cAGCTAGAGGGCGCGCCGGCCCCCGGGCCc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0035214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	436	691	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0035214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	32	238	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
CDH1	999	MSKCC	GRCh37	16	68845649	68845649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	63	557	1	ENST00000261769.5:c.895G>A	p.Ala299Thr	p.A299T	ENST00000261769	NM_004360.3	299	Gcc/Acc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793418	242793419	+	missense_variant	Missense_Mutation	DNP	GA	GA	TC			P-0035214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	322	637	0	ENST00000334409.5:c.658_659inv	p.Ser220Asp	p.S220D	ENST00000334409	NM_005018.2	220	TCt/GAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0035221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	84	511	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0035265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	20	253	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																															
CDH1	999	MSKCC	GRCh37	16	68845698	68845698	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	36	229	0	ENST00000261769.5:c.944A>G	p.Asn315Ser	p.N315S	ENST00000261769	NM_004360.3	315	aAt/aGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115111969	115111969	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0035265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	40	208	0	ENST00000257566.3:c.1770+1G>A		p.X590_splice	ENST00000257566	NM_016569.3	590																																																																																
CBFB	865	MSKCC	GRCh37	16	67100604	67100604	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	33	168	0	ENST00000412916.2:c.302del	p.Met101ArgfsTer3	p.M101Rfs*3	ENST00000412916		101	aTg/ag																																																																															
ERF	2077	MSKCC	GRCh37	19	42753323	42753323	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	118	504	0	ENST00000222329.4:c.941T>A	p.Leu314Gln	p.L314Q	ENST00000222329	NM_006494.2	314	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0035266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	134	502	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69028091	69028091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	36	397	0	ENST00000288368.4:c.3250C>T	p.Arg1084Trp	p.R1084W	ENST00000288368	NM_024870.2	1084	Cgg/Tgg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844722	156844722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	89	644	2	ENST00000524377.1:c.1276G>A	p.Val426Ile	p.V426I	ENST00000524377	NM_002529.3	426	Gtc/Atc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467134	25467134	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	126	463	0	ENST00000264709.3:c.1741T>A	p.Trp581Arg	p.W581R	ENST00000264709	NM_175629.2	581	Tgg/Agg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396919	139396919	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	72	282	0	ENST00000277541.6:c.5189C>G	p.Pro1730Arg	p.P1730R	ENST00000277541	NM_017617.3	1730	cCg/cGg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111498	8111502	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGA	GAGGA	-			P-0035277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	254	513	0	ENST00000346208.3:c.985_989del	p.Arg329GlufsTer21	p.R329Efs*21	ENST00000346208		328	tgGAGGAgg/tggg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441259	52441259	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	54	459	0	ENST00000460680.1:c.511G>T	p.Val171Phe	p.V171F	ENST00000460680	NM_004656.3	171	Gtc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0035289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	285	733	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PARP1	142	MSKCC	GRCh37	1	226567782	226567782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	607	638	0	ENST00000366794.5:c.1384G>A	p.Val462Ile	p.V462I	ENST00000366794	NM_001618.3	462	Gtc/Atc																																																																															
NF1	4763	MSKCC	GRCh37	17	29701075	29701075	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	373	312	0	ENST00000358273.4:c.8422T>C	p.Cys2808Arg	p.C2808R	ENST00000358273	NM_001042492.2	2808	Tgt/Cgt																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170015131	170015131	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	653	639	0	ENST00000295797.4:c.1537T>A	p.Phe513Ile	p.F513I	ENST00000295797	NM_002740.5	513	Ttt/Att																																																																															
TSC1	7248	MSKCC	GRCh37	9	135798806	135798806	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	202	248	0	ENST00000298552.3:c.437C>G	p.Ser146Cys	p.S146C	ENST00000298552	NM_001162426.1	146	tCt/tGt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137323775	137323775	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	10856	824	0	ENST00000481739.1:c.1068G>C	p.Lys356Asn	p.K356N	ENST00000481739	NM_002957.4	356	aaG/aaC																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115711	8115712	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCT			P-0035295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	74	293	0	ENST00000346208.3:c.1058_1061dup	p.Thr355ProfsTer17	p.T355Pfs*17	ENST00000346208		353	ccc/cCCCTcc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870865	12870875	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTCTTCGGC	ACCTCTTCGGC	-			P-0035295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	62	166	0	ENST00000228872.4:c.92_102del	p.Asn31ThrfsTer90	p.N31Tfs*90	ENST00000228872	NM_004064.3	31	aACCTCTTCGGC/a																																																																															
CBFB	865	MSKCC	GRCh37	16	67063666	67063666	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	96	321	0	ENST00000412916.2:c.115G>T	p.Glu39Ter	p.E39*	ENST00000412916		39	Gaa/Taa																																																																															
ATRX	546	MSKCC	GRCh37	X	76938347	76938347	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	59	656	1	ENST00000373344.5:c.2401T>A	p.Ser801Thr	p.S801T	ENST00000373344	NM_000489.3	801	Tct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	177	466	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	63	240	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593466	48593466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	110	409	0	ENST00000342988.3:c.1217C>T	p.Ala406Val	p.A406V	ENST00000342988	NM_005359.5	406	gCg/gTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604769	48604769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	78	396	0	ENST00000342988.3:c.1591C>T	p.Arg531Trp	p.R531W	ENST00000342988	NM_005359.5	531	Cgg/Tgg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533883	63533884	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	97	462	0	ENST00000307078.5:c.1270_1271del	p.Ser424ProfsTer37	p.S424Pfs*37	ENST00000307078	NM_004655.3	424	TCc/c																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412647	63412648	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	209	584	0	ENST00000330258.3:c.519dupT	p.Ser174Ter	p.S174*	ENST00000330258	NM_152424.3	173	-/T																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14024724	14024724	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	111	453	1	ENST00000311895.7:c.954del	p.Ala319LeufsTer19	p.A319Lfs*19	ENST00000311895	NM_005236.2	317	gAa/ga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349775	89349775	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	334	717	0	ENST00000301030.4:c.3175A>G	p.Lys1059Glu	p.K1059E	ENST00000301030	NM_001256183.1	1059	Aaa/Gaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604797	48604797	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	72	351	0	ENST00000342988.3:c.1619T>C	p.Leu540Pro	p.L540P	ENST00000342988	NM_005359.5	540	cTt/cCt																																																																															
BBC3	27113	MSKCC	GRCh37	19	47724984	47724984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	139	661	1	ENST00000449228.1:c.760G>A	p.Ala254Thr	p.A254T	ENST00000449228	NM_001127240.2	254	Gcg/Acg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591117	+	inframe_deletion	In_Frame_Del	DEL	AACAGCATTAAACCAGACCTT	AACAGCATTAAACCAGACCTT	-			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	124	241	0	ENST00000274335.5:c.1691_1711del	p.Asn564_Leu570del	p.N564_L570del	ENST00000274335		564	AACAGCATTAAACCAGACCTT/-																																																																															
APC	324	MSKCC	GRCh37	5	112175554	112175555	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	144	332	1	ENST00000257430.4:c.4263_4264delinsCT	p.Asp1422Tyr	p.D1422Y	ENST00000257430	NM_000038.5	1421	agTGat/agCTat																																																																															
APC	324	MSKCC	GRCh37	5	112175561	112175570	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGATAGCC	CCAGATAGCC	-			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	142	325	0	ENST00000257430.4:c.4271_4280del	p.Pro1424LeufsTer46	p.P1424Lfs*46	ENST00000257430	NM_000038.5	1424	CCAGATAGCCct/ct																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923090	39923090	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	134	703	0	ENST00000378444.4:c.3618A>T	p.Lys1206Asn	p.K1206N	ENST00000378444	NM_001123385.1	1206	aaA/aaT																																																																															
RB1	5925	MSKCC	GRCh37	13	48937001	48937001	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	83	391	0	ENST00000267163.4:c.769C>T	p.Gln257Ter	p.Q257*	ENST00000267163	NM_000321.2	257	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692985	89692985	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	84	379	0	ENST00000371953.3:c.469G>T	p.Glu157Ter	p.E157*	ENST00000371953	NM_000314.4	157	Gaa/Taa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120461945	120461945	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	119	493	0	ENST00000256646.2:c.5771G>C	p.Gly1924Ala	p.G1924A	ENST00000256646	NM_024408.3	1924	gGt/gCt																																																																															
LYN	4067	MSKCC	GRCh37	8	56922574	56922574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	140	472	0	ENST00000519728.1:c.1444G>A	p.Glu482Lys	p.E482K	ENST00000519728	NM_002350.3	482	Gaa/Aaa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14014146	14014146	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	133	505	0	ENST00000311895.7:c.124G>C	p.Asp42His	p.D42H	ENST00000311895	NM_005236.2	42	Gac/Cac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	302	434	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	270	332	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	103	489	4	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022403	31022425	+	frameshift_variant	Frame_Shift_Del	DEL	CACCACTGCCATAGAGAGGCGGC	CACCACTGCCATAGAGAGGCGGC	-			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	129	317	0	ENST00000375687.4:c.1900_1922delAGAGAGGCGGCCACCACTGCCAT	p.Glu635ArgfsTer15	p.E635Rfs*15	ENST00000375687	NM_015338.5	630	CACCACTGCCATAGAGAGGCGGCc/c																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	249	552	1	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577112	7577112	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	466	787	0	ENST00000269305.4:c.826G>C	p.Ala276Pro	p.A276P	ENST00000269305	NM_001126112.2	276	Gcc/Ccc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729888	41729888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	89	593	0	ENST00000242208.4:c.641G>A	p.Arg214Gln	p.R214Q	ENST00000242208	NM_002192.2	214	cGg/cAg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249393	110249393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1322	251	944	1	ENST00000374672.4:c.1180G>A	p.Ala394Thr	p.A394T	ENST00000374672	NM_004235.4	394	Gcc/Acc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738280	145738280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1584	161	914	0	ENST00000428558.2:c.2705G>A	p.Arg902Gln	p.R902Q	ENST00000428558	NM_004260.3	902	cGg/cAg																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225789	26225789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	43	383	0	ENST00000360408.1:c.407C>T	p.Ala136Val	p.A136V	ENST00000360408	NM_003532.2	136	gCg/gTg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108698	8108698	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	263	558	0	ENST00000585124.1:c.697A>G	p.Met233Val	p.M233V	ENST00000585124	NM_004217.3	233	Atg/Gtg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137321073	137321073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	36	526	0	ENST00000481739.1:c.1030G>A	p.Ala344Thr	p.A344T	ENST00000481739	NM_002957.4	344	Gcc/Acc																																																																															
BARD1	580	MSKCC	GRCh37	2	215645336	215645336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	50	622	0	ENST00000260947.4:c.1262C>T	p.Ala421Val	p.A421V	ENST00000260947	NM_000465.2	421	gCt/gTt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509084	66509085	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	13	335	0	ENST00000273854.3:c.242dupA	p.Asn81LysfsTer8	p.N81Kfs*8	ENST00000273854	NM_004439.5	81	aat/aaAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827419	72827419	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	433	852	0	ENST00000268489.5:c.9162C>A	p.Asp3054Glu	p.D3054E	ENST00000268489	NM_006885.3	3054	gaC/gaA																																																																															
BRAF	673	MSKCC	GRCh37	7	140476811	140476811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	78	601	0	ENST00000288602.6:c.1595G>A	p.Cys532Tyr	p.C532Y	ENST00000288602	NM_004333.4	532	tGt/tAt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912061	50912061	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149569984		P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1086	83	793	0	ENST00000440232.2:c.1795G>A	p.Ala599Thr	p.A599T	ENST00000440232	NM_002691.3	599	Gcc/Acc																																																																															
EP300	2033	MSKCC	GRCh37	22	41572357	41572357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1155	75	782	2	ENST00000263253.7:c.4886C>T	p.Ala1629Val	p.A1629V	ENST00000263253	NM_001429.3	1629	gCg/gTg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175957444	175957444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs201905141		P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	263	506	0	ENST00000367669.3:c.1952A>G	p.Asn651Ser	p.N651S	ENST00000367669	NM_022457.5	651	aAt/aGt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683168	88683168	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	27	467	0	ENST00000372037.3:c.1378A>G	p.Met460Val	p.M460V	ENST00000372037	NM_004329.2	460	Atg/Gtg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444702	49444702	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	518	816	1	ENST00000301067.7:c.2764del	p.Glu922SerfsTer8	p.E922Sfs*8	ENST00000301067	NM_003482.3	922	Gag/ag																																																																															
RAB35	11021	MSKCC	GRCh37	12	120536623	120536623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	378	727	0	ENST00000229340.5:c.469G>T	p.Val157Leu	p.V157L	ENST00000229340	NM_006861.6	157	Gtg/Ttg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435001	110435001	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	411	649	0	ENST00000375856.3:c.3400A>T	p.Lys1134Ter	p.K1134*	ENST00000375856	NM_003749.2	1134	Aag/Tag																																																																															
CYLD	1540	MSKCC	GRCh37	16	50815298	50815298	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	101	742	0	ENST00000398568.2:c.1651C>G	p.Gln551Glu	p.Q551E	ENST00000398568	NM_001042412.1	551	Cag/Gag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991352	72991352	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	84	684	0	ENST00000268489.5:c.2693C>A	p.Pro898His	p.P898H	ENST00000268489	NM_006885.3	898	cCc/cAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602645	10602645	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	448	726	0	ENST00000171111.5:c.933C>G	p.His311Gln	p.H311Q	ENST00000171111	NM_203500.1	311	caC/caG																																																																															
XPO1	7514	MSKCC	GRCh37	2	61753559	61753559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	310	345	0	ENST00000401558.2:c.224C>T	p.Thr75Met	p.T75M	ENST00000401558	NM_003400.3	75	aCg/aTg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209108290	209108290	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	70	569	0	ENST00000345146.2:c.559A>G	p.Lys187Glu	p.K187E	ENST00000345146	NM_005896.2	187	Aag/Gag																																																																															
MLH1	4292	MSKCC	GRCh37	3	37048481	37048481	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	259	350	0	ENST00000231790.2:c.381-1G>C		p.X127_splice	ENST00000231790	NM_000249.3	127																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31526376	31526376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	553	1023	2	ENST00000344624.3:c.664C>T	p.Pro222Ser	p.P222S	ENST00000344624		222	Cca/Tca																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755686	57755686	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	474	676	0	ENST00000274289.3:c.101G>C	p.Arg34Pro	p.R34P	ENST00000274289	NM_006622.3	34	cGg/cCg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131976493	131976493	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	334	569	0	ENST00000265335.6:c.3748G>C	p.Val1250Leu	p.V1250L	ENST00000265335		1250	Gtt/Ctt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934046	39934046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	143	405	0	ENST00000378444.4:c.553A>G	p.Ser185Gly	p.S185G	ENST00000378444	NM_001123385.1	185	Agt/Ggt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0035389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	136	541	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610288	10610288	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	260	741	0	ENST00000171111.5:c.422A>G	p.Tyr141Cys	p.Y141C	ENST00000171111	NM_203500.1	141	tAc/tGc																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439649	51439649	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	80	404	0	ENST00000262662.1:c.214G>T	p.Ala72Ser	p.A72S	ENST00000262662		72	Gct/Tct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446821	49446821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	94	516	1	ENST00000301067.7:c.989C>T	p.Ser330Leu	p.S330L	ENST00000301067	NM_003482.3	330	tCa/tTa																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872499	35872499	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	73	504	0	ENST00000216797.5:c.404G>C	p.Cys135Ser	p.C135S	ENST00000216797	NM_020529.2	135	tGt/tCt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991794	72991794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	46	541	0	ENST00000268489.5:c.2251C>T	p.Leu751Phe	p.L751F	ENST00000268489	NM_006885.3	751	Ctc/Ttc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119086	70119086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	49	332	0	ENST00000245479.2:c.658G>A	p.Glu220Lys	p.E220K	ENST00000245479	NM_000346.3	220	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916882	178916882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	137	573	0	ENST00000263967.3:c.269G>T	p.Cys90Phe	p.C90F	ENST00000263967	NM_006218.2	90	tGt/tTt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86682643	86682643	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	48	332	1	ENST00000274376.6:c.2848G>A	p.Glu950Lys	p.E950K	ENST00000274376	NM_002890.2	950	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	21	272	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
HRAS	3265	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28933406		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	321	675	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																															
RAD50	10111	MSKCC	GRCh37	5	131911514	131911514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143802516		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	180	399	0	ENST00000265335.6:c.259C>T	p.Arg87Cys	p.R87C	ENST00000265335		87	Cgt/Tgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	57	496	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	131	311	0	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982356	25982356	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	178	245	0	ENST00000435504.4:c.934C>T	p.Arg312Ter	p.R312*	ENST00000435504		312	Cga/Tga																																																																															
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	192	510	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95572534	95572534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	110	276	0	ENST00000343455.3:c.2831G>A	p.Arg944Gln	p.R944Q	ENST00000343455	NM_177438.2	944	cGa/cAa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16237633	16237633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	190	412	0	ENST00000375759.3:c.1080G>T	p.Lys360Asn	p.K360N	ENST00000375759	NM_015001.2	360	aaG/aaT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117706936	117706936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	167	494	0	ENST00000368508.3:c.2214G>T	p.Glu738Asp	p.E738D	ENST00000368508	NM_002944.2	738	gaG/gaT																																																																															
KDM5A	5927	MSKCC	GRCh37	12	441077	441077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	172	293	0	ENST00000399788.2:c.1681G>A	p.Glu561Lys	p.E561K	ENST00000399788	NM_001042603.1	561	Gag/Aag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65335079	65335079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	138	481	1	ENST00000342505.4:c.562G>A	p.Glu188Lys	p.E188K	ENST00000342505	NM_002227.2	188	Gag/Aag																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176118155	176118155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	106	292	0	ENST00000367669.3:c.818G>T	p.Arg273Ile	p.R273I	ENST00000367669	NM_022457.5	273	aGa/aTa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25468901	25468901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	207	602	0	ENST00000264709.3:c.1462C>T	p.Arg488Trp	p.R488W	ENST00000264709	NM_175629.2	488	Cgg/Tgg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25976476	25976476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	46	456	0	ENST00000435504.4:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000435504		357	Cga/Tga																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561352	9561352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	80	467	0	ENST00000353224.5:c.430G>A	p.Glu144Lys	p.E144K	ENST00000353224	NM_177990.2	144	Gaa/Aaa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	231	490	0	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32899248	32899248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	136	295	0	ENST00000380152.3:c.352C>T	p.Arg118Cys	p.R118C	ENST00000380152		118	Cgc/Tgc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98232138	98232138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	94	315	0	ENST00000331920.6:c.1804C>T	p.Arg602Ter	p.R602*	ENST00000331920	NM_000264.3	602	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108216568	108216568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	151	408	0	ENST00000278616.4:c.8517C>A	p.Phe2839Leu	p.F2839L	ENST00000278616	NM_000051.3	2839	ttC/ttA																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166192	118166192	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	138	321	1	ENST00000369448.3:c.702G>T	p.Lys234Asn	p.K234N	ENST00000369448	NM_017709.3	234	aaG/aaT																																																																															
CASP8	841	MSKCC	GRCh37	2	202131412	202131412	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1339962485		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	33	419	0	ENST00000358485.4:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000358485	NM_001080125.1	127	cGa/cAa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149495372	149495372	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146614144		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	153	610	2	ENST00000261799.4:c.3275C>T	p.Ser1092Leu	p.S1092L	ENST00000261799	NM_002609.3	1092	tCg/tTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280068	66280068	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	26	338	0	ENST00000273854.3:c.1621C>T	p.Arg541Ter	p.R541*	ENST00000273854	NM_004439.5	541	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685281	89685281	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	88	210	0	ENST00000371953.3:c.176C>A	p.Ser59Ter	p.S59*	ENST00000371953	NM_000314.4	59	tCa/tAa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57480495	57480495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	75	257	0	ENST00000371085.3:c.490G>A	p.Glu164Lys	p.E164K	ENST00000371085	NM_000516.4	164	Gaa/Aaa																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52724361	52724361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	161	397	0	ENST00000322088.6:c.1493G>A	p.Arg498His	p.R498H	ENST00000322088	NM_014225.5	498	cGc/cAc																																																																															
MPL	4352	MSKCC	GRCh37	1	43812205	43812205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	191	476	0	ENST00000372470.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000372470	NM_005373.2	357	cGa/cAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911354	32911354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	155	349	0	ENST00000380152.3:c.2862G>T	p.Glu954Asp	p.E954D	ENST00000380152		954	gaG/gaT																																																																															
CIC	23152	MSKCC	GRCh37	19	42797910	42797910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	280	708	2	ENST00000575354.2:c.3962G>A	p.Arg1321His	p.R1321H	ENST00000575354	NM_015125.3	1321	cGc/cAc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576178	88576178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	40	519	1	ENST00000360948.2:c.1495G>A	p.Asp499Asn	p.D499N	ENST00000360948	NM_001012338.2	499	Gac/Aac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827580	72827580	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	37	682	0	ENST00000268489.5:c.9001G>T	p.Glu3001Ter	p.E3001*	ENST00000268489	NM_006885.3	3001	Gaa/Taa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788637	3788637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	146	284	0	ENST00000262367.5:c.4317C>A	p.Phe1439Leu	p.F1439L	ENST00000262367	NM_004380.2	1439	ttC/ttA																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81902892	81902892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	23	468	0	ENST00000359376.3:c.553G>T	p.Asp185Tyr	p.D185Y	ENST00000359376	NM_002661.3	185	Gat/Tat																																																																															
TOP1	7150	MSKCC	GRCh37	20	39713150	39713150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	95	205	0	ENST00000361337.2:c.556C>T	p.Pro186Ser	p.P186S	ENST00000361337	NM_003286.2	186	Cct/Tct																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164118	47164118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	143	335	0	ENST00000409792.3:c.2008G>T	p.Glu670Ter	p.E670*	ENST00000409792	NM_014159.6	670	Gaa/Taa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32920979	32920979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	153	358	1	ENST00000380152.3:c.6953G>A	p.Arg2318Gln	p.R2318Q	ENST00000380152		2318	cGa/cAa																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872795	136872795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	82	361	0	ENST00000241393.3:c.703C>T	p.Arg235Cys	p.R235C	ENST00000241393	NM_003467.2	235	Cgc/Tgc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871196	35871196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	94	286	1	ENST00000303115.3:c.418C>T	p.Arg140Trp	p.R140W	ENST00000303115	NM_002185.3	140	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112178781	112178781	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141010008		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	150	388	1	ENST00000257430.4:c.7490C>T	p.Ser2497Leu	p.S2497L	ENST00000257430	NM_000038.5	2497	tCg/tTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956771	68956771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	114	621	1	ENST00000288368.4:c.889C>T	p.Arg297Cys	p.R297C	ENST00000288368	NM_024870.2	297	Cgt/Tgt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30108091	30108091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80271647		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	92	507	2	ENST00000331968.5:c.716C>T	p.Ser239Leu	p.S239L	ENST00000331968	NM_002742.2	239	tCg/tTg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199821	138199821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	154	408	0	ENST00000237289.4:c.1239G>T	p.Lys413Asn	p.K413N	ENST00000237289	NM_001270507.1	413	aaG/aaT																																																																															
SYK	6850	MSKCC	GRCh37	9	93624558	93624558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	79	341	0	ENST00000375746.1:c.649C>T	p.Arg217Cys	p.R217C	ENST00000375746	NM_001174167.1	217	Cgc/Tgc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58711261	58711261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	248	528	0	ENST00000305921.3:c.749G>A	p.Arg250Gln	p.R250Q	ENST00000305921	NM_003620.3	250	cGa/cAa																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80409422	80409422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	126	342	1	ENST00000286548.4:c.692C>T	p.Ala231Val	p.A231V	ENST00000286548	NM_002072.3	231	gCg/gTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515335	103515335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	68	259	0	ENST00000355739.4:c.1836G>T	p.Glu612Asp	p.E612D	ENST00000355739	NM_000123.3	612	gaG/gaT																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638731	176638731	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151165525		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	229	628	1	ENST00000439151.2:c.3331G>A	p.Asp1111Asn	p.D1111N	ENST00000439151	NM_022455.4	1111	Gat/Aat																																																																															
MET	4233	MSKCC	GRCh37	7	116395478	116395478	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45602940		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	98	382	0	ENST00000397752.3:c.1771C>T	p.Arg591Trp	p.R591W	ENST00000397752	NM_000245.2	591	Cgg/Tgg																																																																															
MET	4233	MSKCC	GRCh37	7	116395569	116395569	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	108	338	0	ENST00000397752.3:c.1862C>T	p.Thr621Ile	p.T621I	ENST00000397752	NM_000245.2	621	aCa/aTa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751213	57751213	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	143	299	0	ENST00000274289.3:c.1654C>T	p.Gln552Ter	p.Q552*	ENST00000274289	NM_006622.3	552	Caa/Taa																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62319939	62319939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	215	580	0	ENST00000508582.2:c.1853G>A	p.Ser618Asn	p.S618N	ENST00000508582		618	aGc/aAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356412	66356412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	108	308	0	ENST00000273854.3:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000273854	NM_004439.5	362	cGg/cAg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59857686	59857686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	132	356	1	ENST00000259008.2:c.1871C>T	p.Ser624Leu	p.S624L	ENST00000259008	NM_032043.2	624	tCg/tTg																																																																															
RB1	5925	MSKCC	GRCh37	13	48923133	48923133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	132	273	0	ENST00000267163.4:c.581C>A	p.Ser194Tyr	p.S194Y	ENST00000267163	NM_000321.2	194	tCt/tAt																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56801452	56801452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	26	402	1	ENST00000337432.4:c.956G>A	p.Arg319Gln	p.R319Q	ENST00000337432	NM_058216.2	319	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178943755	178943755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200671228		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	127	273	0	ENST00000263967.3:c.2422C>T	p.Arg808Trp	p.R808W	ENST00000263967	NM_006218.2	808	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105688	27105688	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	126	293	0	ENST00000324856.7:c.5299G>T	p.Glu1767Ter	p.E1767*	ENST00000324856	NM_006015.4	1767	Gaa/Taa																																																																															
SESN3	143686	MSKCC	GRCh37	11	94906445	94906445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	150	464	0	ENST00000536441.1:c.1453C>T	p.Arg485Cys	p.R485C	ENST00000536441	NM_144665.3	485	Cgt/Tgt																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40447715	40447715	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	160	591	0	ENST00000345506.4:c.454C>T	p.Arg152Ter	p.R152*	ENST00000345506	NM_003152.3	152	Cga/Tga																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865216	57865216	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	185	740	0	ENST00000228682.2:c.2693T>C	p.Val898Ala	p.V898A	ENST00000228682	NM_005269.2	898	gTg/gCg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43707863	43707863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	264	697	0	ENST00000382044.4:c.5018G>T	p.Arg1673Ile	p.R1673I	ENST00000382044	NM_001141980.1	1673	aGa/aTa																																																																															
STK40	83931	MSKCC	GRCh37	1	36808981	36808981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	212	603	2	ENST00000373129.3:c.1073C>T	p.Ala358Val	p.A358V	ENST00000373129	NM_032017.1	358	gCg/gTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518653	103518653	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	75	227	0	ENST00000355739.4:c.2241G>T	p.Gln747His	p.Q747H	ENST00000355739	NM_000123.3	747	caG/caT																																																																															
CDH1	999	MSKCC	GRCh37	16	68863690	68863690	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	119	339	0	ENST00000261769.5:c.2429T>G	p.Phe810Cys	p.F810C	ENST00000261769	NM_004360.3	810	tTt/tGt																																																																															
ATR	545	MSKCC	GRCh37	3	142238616	142238616	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	107	196	0	ENST00000350721.4:c.4277C>A	p.Ser1426Tyr	p.S1426Y	ENST00000350721	NM_001184.3	1426	tCt/tAt																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519596	137519596	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	34	407	0	ENST00000367739.4:c.1042G>T	p.Glu348Ter	p.E348*	ENST00000367739	NM_000416.2	348	Gaa/Taa																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30321667	30321667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	220	568	2	ENST00000322652.5:c.1522C>T	p.Arg508Cys	p.R508C	ENST00000322652	NM_015355.2	508	Cgc/Tgc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383182	42383182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	181	552	1	ENST00000221972.3:c.202C>T	p.Arg68Cys	p.R68C	ENST00000221972	NM_021601.3	68	Cgc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510219	187510219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	87	444	0	ENST00000441802.2:c.13294G>A	p.Glu4432Lys	p.E4432K	ENST00000441802	NM_005245.3	4432	Gaa/Aaa																																																																															
VHL	7428	MSKCC	GRCh37	3	10191635	10191635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	62	471	0	ENST00000256474.2:c.628C>T	p.Arg210Trp	p.R210W	ENST00000256474	NM_000551.3	210	Cgg/Tgg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190738302	190738302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	120	307	0	ENST00000441310.2:c.2554G>A	p.Glu852Lys	p.E852K	ENST00000441310	NM_000534.4	852	Gaa/Aaa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573220	64573220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	259	666	0	ENST00000337652.1:c.1087G>A	p.Glu363Lys	p.E363K	ENST00000337652	NM_130803.2	363	Gag/Aag																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522657	67522657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	143	283	0	ENST00000274335.5:c.154G>T	p.Glu52Ter	p.E52*	ENST00000274335		52	Gaa/Taa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118391571	118391571	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	143	317	1	ENST00000534358.1:c.11484G>T	p.Lys3828Asn	p.K3828N	ENST00000534358	NM_005933.3	3828	aaG/aaT																																																																															
CDC42	998	MSKCC	GRCh37	1	22417932	22417932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	97	228	0	ENST00000344548.3:c.498G>T	p.Lys166Asn	p.K166N	ENST00000344548	NM_001039802.1	166	aaG/aaT																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70982004	70982004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	156	821	1	ENST00000276594.2:c.92C>T	p.Thr31Met	p.T31M	ENST00000276594	NM_024504.3	31	aCg/aTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100824	27100824	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	104	359	0	ENST00000324856.7:c.4106A>G	p.Tyr1369Cys	p.Y1369C	ENST00000324856	NM_006015.4	1369	tAc/tGc																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599185	28599185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	236	832	2	ENST00000253063.3:c.631G>A	p.Val211Met	p.V211M	ENST00000253063	NM_031459.4	211	Gtg/Atg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65309798	65309798	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	150	556	0	ENST00000342505.4:c.2352G>A	p.Trp784Ter	p.W784*	ENST00000342505	NM_002227.2	784	tgG/tgA																																																																															
JAK1	3716	MSKCC	GRCh37	1	65321352	65321352	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	161	549	0	ENST00000342505.4:c.1488G>T	p.Lys496Asn	p.K496N	ENST00000342505	NM_002227.2	496	aaG/aaT																																																																															
JAK1	3716	MSKCC	GRCh37	1	65332642	65332642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	116	330	0	ENST00000342505.4:c.897G>T	p.Met299Ile	p.M299I	ENST00000342505	NM_002227.2	299	atG/atT																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115280642	115280642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	198	604	0	ENST00000438362.2:c.389C>T	p.Ala130Val	p.A130V	ENST00000438362	NM_001242891.1	130	gCt/gTt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120510239	120510239	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	162	357	0	ENST00000256646.2:c.1270A>G	p.Ser424Gly	p.S424G	ENST00000256646	NM_024408.3	424	Agc/Ggc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162737018	162737018	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	147	407	1	ENST00000367921.3:c.1163-1G>T		p.X388_splice	ENST00000367921	NM_006182.2	388																																																																																
DDR2	4921	MSKCC	GRCh37	1	162737079	162737079	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	187	551	0	ENST00000367921.3:c.1223T>C	p.Ile408Thr	p.I408T	ENST00000367921	NM_006182.2	408	aTc/aCc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745465	162745465	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	145	331	0	ENST00000367921.3:c.1880A>T	p.Lys627Met	p.K627M	ENST00000367921	NM_006182.2	627	aAg/aTg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981197	201981197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	325	778	0	ENST00000359651.3:c.276C>A	p.Phe92Leu	p.F92L	ENST00000359651		92	ttC/ttA																																																																															
MDM4	4194	MSKCC	GRCh37	1	204513804	204513804	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	84	196	0	ENST00000367182.3:c.814G>T	p.Asp272Tyr	p.D272Y	ENST00000367182	NM_001278516.1	272	Gac/Tac																																																																															
TET1	80312	MSKCC	GRCh37	10	70333547	70333547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	140	485	0	ENST00000373644.4:c.1452G>T	p.Glu484Asp	p.E484D	ENST00000373644	NM_030625.2	484	gaG/gaT																																																																															
TET1	80312	MSKCC	GRCh37	10	70404659	70404659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	187	394	0	ENST00000373644.4:c.2173G>A	p.Asp725Asn	p.D725N	ENST00000373644	NM_030625.2	725	Gat/Aat																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123260350	123260350	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	129	507	0	ENST00000358487.5:c.1551G>T	p.Lys517Asn	p.K517N	ENST00000358487	NM_000141.4	517	aaG/aaT																																																																															
WT1	7490	MSKCC	GRCh37	11	32414253	32414253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	50	433	0	ENST00000332351.3:c.1298C>A	p.Ser433Tyr	p.S433Y	ENST00000332351	NM_024426.4	433	tCt/tAt																																																																															
CCND1	595	MSKCC	GRCh37	11	69465963	69465963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	165	586	0	ENST00000227507.2:c.801C>A	p.Asp267Glu	p.D267E	ENST00000227507	NM_053056.2	267	gaC/gaA																																																																															
SESN3	143686	MSKCC	GRCh37	11	94918635	94918635	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	114	347	0	ENST00000536441.1:c.547A>C	p.Asn183His	p.N183H	ENST00000536441	NM_144665.3	183	Aat/Cat																																																																															
PGR	5241	MSKCC	GRCh37	11	100998977	100998977	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	22	486	0	ENST00000325455.5:c.825C>A	p.Phe275Leu	p.F275L	ENST00000325455	NM_001202474.3	275	ttC/ttA																																																																															
ATM	472	MSKCC	GRCh37	11	108106420	108106420	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	80	165	0	ENST00000278616.4:c.355G>T	p.Glu119Ter	p.E119*	ENST00000278616	NM_000051.3	119	Gaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108199917	108199917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	15	156	0	ENST00000278616.4:c.7259C>T	p.Ala2420Val	p.A2420V	ENST00000278616	NM_000051.3	2420	gCc/gTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342500	118342500	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	71	155	0	ENST00000534358.1:c.626A>G	p.Lys209Arg	p.K209R	ENST00000534358	NM_005933.3	209	aAg/aGg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374685	118374685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	118	356	0	ENST00000534358.1:c.8078C>A	p.Ser2693Tyr	p.S2693Y	ENST00000534358	NM_005933.3	2693	tCt/tAt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118377244	118377244	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	116	345	0	ENST00000534358.1:c.10637T>C	p.Phe3546Ser	p.F3546S	ENST00000534358	NM_005933.3	3546	tTt/tCt																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125497683	125497683	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	183	456	0	ENST00000428830.2:c.247T>G	p.Phe83Val	p.F83V	ENST00000428830	NM_001114121.2	83	Ttt/Gtt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	430160	430160	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	76	253	0	ENST00000399788.2:c.2541+1G>A		p.X847_splice	ENST00000399788	NM_001042603.1	847																																																																																
PIK3C2G	5288	MSKCC	GRCh37	12	18446939	18446939	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	72	344	0	ENST00000266497.5:c.1024T>A	p.Phe342Ile	p.F342I	ENST00000266497		342	Ttt/Att																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552725	18552725	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	122	522	0	ENST00000266497.5:c.2136T>G	p.Ile712Met	p.I712M	ENST00000266497		712	atT/atG																																																																															
RECQL	5965	MSKCC	GRCh37	12	21639514	21639514	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	55	208	0	ENST00000421138.2:c.400A>G	p.Thr134Ala	p.T134A	ENST00000421138		134	Aca/Gca																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231397	46231397	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	155	422	0	ENST00000334344.6:c.1237C>G	p.Leu413Val	p.L413V	ENST00000334344	NM_152641.2	413	Ctg/Gtg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246660	46246660	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	67	143	0	ENST00000334344.6:c.4754T>C	p.Val1585Ala	p.V1585A	ENST00000334344	NM_152641.2	1585	gTa/gCa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445802	49445802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	393	949	0	ENST00000301067.7:c.1664C>T	p.Ser555Phe	p.S555F	ENST00000301067	NM_003482.3	555	tCc/tTc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495835	56495835	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140679673		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	107	292	0	ENST00000267101.3:c.4025C>T	p.Thr1342Met	p.T1342M	ENST00000267101	NM_001982.3	1342	aCg/aTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865735	57865735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	232	622	1	ENST00000228682.2:c.3212C>A	p.Ser1071Tyr	p.S1071Y	ENST00000228682	NM_005269.2	1071	tCt/tAt																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233134	69233134	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	21	326	0	ENST00000462284.1:c.999G>T	p.Glu333Asp	p.E333D	ENST00000462284	NM_002392.5	333	gaG/gaT																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813310	102813310	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	156	417	0	ENST00000307046.8:c.379A>G	p.Thr127Ala	p.T127A	ENST00000307046	NM_001111285.1	127	Acc/Gcc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120722	115120722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	270	650	0	ENST00000257566.3:c.284C>T	p.Pro95Leu	p.P95L	ENST00000257566	NM_016569.3	95	cCc/cTc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431327	121431327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	28	301	0	ENST00000257555.6:c.531C>A	p.Phe177Leu	p.F177L	ENST00000257555		177	ttC/ttA																																																																															
POLE	5426	MSKCC	GRCh37	12	133202820	133202820	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	180	479	1	ENST00000320574.5:c.6414C>A	p.Phe2138Leu	p.F2138L	ENST00000320574	NM_006231.2	2138	ttC/ttA																																																																															
LATS2	26524	MSKCC	GRCh37	13	21620068	21620068	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139154828		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	234	642	0	ENST00000382592.4:c.98C>T	p.Ser33Leu	p.S33L	ENST00000382592	NM_014572.2	33	tCg/tTg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28601304	28601304	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	91	386	0	ENST00000241453.7:c.2128T>A	p.Phe710Ile	p.F710I	ENST00000241453	NM_004119.2	710	Ttt/Att																																																																															
FLT1	2321	MSKCC	GRCh37	13	29005371	29005371	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	95	556	0	ENST00000282397.4:c.890C>A	p.Thr297Asn	p.T297N	ENST00000282397	NM_002019.4	297	aCt/aAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913900	32913900	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	39	432	0	ENST00000380152.3:c.5408C>A	p.Thr1803Asn	p.T1803N	ENST00000380152		1803	aCt/aAt																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281656	49281656	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	200	791	0	ENST00000282018.3:c.703G>T	p.Glu235Ter	p.E235*	ENST00000282018	NM_020377.2	235	Gaa/Taa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107764	30107764	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	193	514	0	ENST00000331968.5:c.916T>G	p.Phe306Val	p.F306V	ENST00000331968	NM_002742.2	306	Ttc/Gtc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610191	81610191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	99	376	1	ENST00000298171.2:c.1789G>A	p.Val597Ile	p.V597I	ENST00000298171	NM_000369.2	597	Gtc/Atc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643692	38643692	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	153	694	0	ENST00000299084.4:c.1162T>C	p.Ser388Pro	p.S388P	ENST00000299084	NM_152594.2	388	Tct/Cct																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43699633	43699633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	208	561	0	ENST00000382044.4:c.5882G>T	p.Arg1961Ile	p.R1961I	ENST00000382044	NM_001141980.1	1961	aGa/aTa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423571	88423571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	135	527	0	ENST00000360948.2:c.2264G>A	p.Ser755Asn	p.S755N	ENST00000360948	NM_001012338.2	755	aGc/aAc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88670415	88670415	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	65	285	0	ENST00000360948.2:c.1271A>G	p.Lys424Arg	p.K424R	ENST00000360948	NM_001012338.2	424	aAa/aGa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819305	3819305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	49	586	0	ENST00000262367.5:c.2930C>T	p.Ser977Leu	p.S977L	ENST00000262367	NM_004380.2	977	tCg/tTg																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349099	11349099	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	93	286	0	ENST00000332029.2:c.237C>A	p.Phe79Leu	p.F79L	ENST00000332029	NM_003745.1	79	ttC/ttA																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813766	50813766	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	147	593	1	ENST00000398568.2:c.1320G>T	p.Gln440His	p.Q440H	ENST00000398568	NM_001042412.1	440	caG/caT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828296	72828296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	160	572	0	ENST00000268489.5:c.8285G>A	p.Gly2762Glu	p.G2762E	ENST00000268489	NM_006885.3	2762	gGa/gAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830513	72830513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	160	614	0	ENST00000268489.5:c.6068G>T	p.Arg2023Ile	p.R2023I	ENST00000268489	NM_006885.3	2023	aGa/aTa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81888129	81888129	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	81	437	1	ENST00000359376.3:c.274G>T	p.Glu92Ter	p.E92*	ENST00000359376	NM_002661.3	92	Gaa/Taa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81973581	81973581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	106	562	0	ENST00000359376.3:c.3398G>A	p.Arg1133His	p.R1133H	ENST00000359376	NM_002661.3	1133	cGc/cAc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7984028	7984028	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	93	334	1	ENST00000319144.4:c.598C>A	p.Leu200Ile	p.L200I	ENST00000319144	NM_001139.2	200	Ctc/Atc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15950311	15950311	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	227	702	1	ENST00000268712.3:c.6633G>T	p.Glu2211Asp	p.E2211D	ENST00000268712	NM_006311.3	2211	gaG/gaT																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687473	37687473	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	20	216	0	ENST00000447079.4:c.4377G>T	p.Trp1459Cys	p.W1459C	ENST00000447079	NM_015083.1	1459	tgG/tgT																																																																															
EZH1	2145	MSKCC	GRCh37	17	40872306	40872306	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	253	692	0	ENST00000428826.2:c.649C>T	p.Arg217Ter	p.R217*	ENST00000428826		217	Cga/Tga																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59820424	59820424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	162	401	2	ENST00000259008.2:c.2329C>T	p.Arg777Cys	p.R777C	ENST00000259008	NM_032043.2	777	Cgt/Tgt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554147	63554147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	167	655	0	ENST00000307078.5:c.592G>A	p.Glu198Lys	p.E198K	ENST00000307078	NM_004655.3	198	Gaa/Aaa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39567850	39567850	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	57	221	0	ENST00000262039.4:c.606A>C	p.Glu202Asp	p.E202D	ENST00000262039	NM_002647.2	202	gaA/gaC																																																																															
MALT1	10892	MSKCC	GRCh37	18	56412984	56412984	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	171	369	0	ENST00000348428.3:c.1998T>G	p.His666Gln	p.H666Q	ENST00000348428	NM_006785.3	666	caT/caG																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10283825	10283825	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	189	568	0	ENST00000340748.4:c.661G>T	p.Glu221Ter	p.E221*	ENST00000340748		221	Gaa/Taa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11100009	11100009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	187	501	0	ENST00000344626.4:c.1135G>A	p.Ala379Thr	p.A379T	ENST00000344626	NM_003072.3	379	Gca/Aca																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19261533	19261533	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	223	566	0	ENST00000162023.5:c.12A>C	p.Lys4Asn	p.K4N	ENST00000162023		4	aaA/aaC																																																																															
CIC	23152	MSKCC	GRCh37	19	42790984	42790984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	232	592	1	ENST00000575354.2:c.129C>A	p.Phe43Leu	p.F43L	ENST00000575354	NM_015125.3	43	ttC/ttA																																																																															
ALK	238	MSKCC	GRCh37	2	29551328	29551328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	69	502	0	ENST00000389048.3:c.1302G>T	p.Lys434Asn	p.K434N	ENST00000389048	NM_004304.4	434	aaG/aaT																																																																															
SOS1	6654	MSKCC	GRCh37	2	39224114	39224115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	260	575	0	ENST00000402219.2:c.3029dup	p.Asn1011GlnfsTer12	p.N1011Qfs*12	ENST00000402219	NM_005633.3	1010	ttc/ttTc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033448	48033448	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	150	505	1	ENST00000234420.5:c.3752C>A	p.Ser1251Ter	p.S1251*	ENST00000234420	NM_000179.2	1251	tCa/tAa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033789	48033789	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	88	258	0	ENST00000234420.5:c.4000C>T	p.Arg1334Trp	p.R1334W	ENST00000234420	NM_000179.2	1334	Cgg/Tgg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719204	61719204	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	32	364	1	ENST00000401558.2:c.1853T>G	p.Ile618Ser	p.I618S	ENST00000401558	NM_003400.3	618	aTt/aGt																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96920736	96920736	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	96	258	0	ENST00000258439.3:c.245-1G>A		p.X82_splice	ENST00000258439	NM_001193304.2	82																																																																																
CXCR4	7852	MSKCC	GRCh37	2	136872777	136872777	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	98	371	0	ENST00000241393.3:c.721A>G	p.Thr241Ala	p.T241A	ENST00000241393	NM_003467.2	241	Aca/Gca																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095913	178095913	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	193	472	0	ENST00000397062.3:c.1418T>G	p.Ile473Ser	p.I473S	ENST00000397062	NM_006164.4	473	aTc/aGc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719632	190719632	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	74	164	0	ENST00000441310.2:c.1634C>A	p.Ser545Ter	p.S545*	ENST00000441310	NM_000534.4	545	tCa/tAa																																																																															
CUL3	8452	MSKCC	GRCh37	2	225422503	225422503	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs190453078		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	215	525	0	ENST00000264414.4:c.137G>A	p.Arg46His	p.R46H	ENST00000264414	NM_003590.4	46	cGt/cAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877425	40877425	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	118	471	0	ENST00000373198.4:c.2271G>T	p.Glu757Asp	p.E757D	ENST00000373198	NM_133170.3	757	gaG/gaT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161912	47161912	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	177	423	0	ENST00000409792.3:c.4214A>C	p.Lys1405Thr	p.K1405T	ENST00000409792	NM_014159.6	1405	aAa/aCa																																																																															
MST1	4485	MSKCC	GRCh37	3	49723626	49723626	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	72	202	0	ENST00000449682.2:c.1017-1G>T		p.X339_splice	ENST00000449682	NM_020998.3	339																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52661288	52661288	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	169	382	0	ENST00000394830.3:c.1541+1G>A		p.X514_splice	ENST00000394830	NM_018313.4	514																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134920479	134920479	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	103	605	0	ENST00000398015.3:c.2294T>C	p.Leu765Pro	p.L765P	ENST00000398015	NM_004441.4	765	cTc/cCc																																																																															
TP63	8626	MSKCC	GRCh37	3	189585701	189585701	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	183	490	0	ENST00000264731.3:c.962T>G	p.Ile321Ser	p.I321S	ENST00000264731	NM_003722.4	321	aTt/aGt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902664	1902664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	234	575	1	ENST00000382891.5:c.283G>T	p.Asp95Tyr	p.D95Y	ENST00000382891	NM_133335.3	95	Gat/Tat																																																																															
KDR	3791	MSKCC	GRCh37	4	55955933	55955933	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	38	399	1	ENST00000263923.4:c.3229A>C	p.Ile1077Leu	p.I1077L	ENST00000263923	NM_002253.2	1077	Att/Ctt																																																																															
KDR	3791	MSKCC	GRCh37	4	55972865	55972865	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	83	405	1	ENST00000263923.4:c.1525G>T	p.Gly509Ter	p.G509*	ENST00000263923	NM_002253.2	509	Gga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361225	66361225	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs150719652		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	21	286	0	ENST00000273854.3:c.947T>C	p.Ile316Thr	p.I316T	ENST00000273854	NM_004439.5	316	aTc/aCc																																																																															
TET2	54790	MSKCC	GRCh37	4	106156588	106156588	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	22	275	0	ENST00000380013.4:c.1489A>G	p.Thr497Ala	p.T497A	ENST00000380013	NM_001127208.2	497	Act/Gct																																																																															
TET2	54790	MSKCC	GRCh37	4	106157856	106157856	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	17	248	0	ENST00000380013.4:c.2757C>A	p.Tyr919Ter	p.Y919*	ENST00000380013	NM_001127208.2	919	taC/taA																																																																															
TET2	54790	MSKCC	GRCh37	4	106158407	106158407	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	17	278	0	ENST00000380013.4:c.3308A>C	p.Asn1103Thr	p.N1103T	ENST00000380013	NM_001127208.2	1103	aAt/aCt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532900	187532900	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	21	349	0	ENST00000441802.2:c.9493A>C	p.Ile3165Leu	p.I3165L	ENST00000441802	NM_005245.3	3165	Att/Ctt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515625	31515625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	103	398	0	ENST00000344624.3:c.994G>A	p.Glu332Lys	p.E332K	ENST00000344624		332	Gaa/Aaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56152446	56152446	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	67	164	0	ENST00000399503.3:c.502G>T	p.Glu168Ter	p.E168*	ENST00000399503	NM_005921.1	168	Gaa/Taa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155672	56155672	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	115	278	0	ENST00000399503.3:c.764A>T	p.Asn255Ile	p.N255I	ENST00000399503	NM_005921.1	255	aAc/aTc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754273	57754273	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	41	466	0	ENST00000274289.3:c.578T>G	p.Leu193Arg	p.L193R	ENST00000274289	NM_006622.3	193	cTg/cGg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149450108	149450108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	196	660	0	ENST00000286301.3:c.1109G>A	p.Arg370His	p.R370H	ENST00000286301	NM_005211.3	370	cGc/cAc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460453	149460453	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	168	633	0	ENST00000286301.3:c.184T>G	p.Ser62Ala	p.S62A	ENST00000286301	NM_005211.3	62	Tct/Gct																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149509454	149509454	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	188	664	0	ENST00000261799.4:c.1445A>G	p.Tyr482Cys	p.Y482C	ENST00000261799	NM_002609.3	482	tAc/tGc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562133	176562133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	43	538	1	ENST00000439151.2:c.29G>T	p.Arg10Ile	p.R10I	ENST00000439151	NM_022455.4	10	aGa/aTa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638065	176638065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	170	588	0	ENST00000439151.2:c.2665C>A	p.Leu889Ile	p.L889I	ENST00000439151	NM_022455.4	889	Ctt/Att																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638068	176638068	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	47	591	0	ENST00000439151.2:c.2668T>G	p.Phe890Val	p.F890V	ENST00000439151	NM_022455.4	890	Ttc/Gtc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675679	30675679	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	381	871	0	ENST00000376406.3:c.2677G>T	p.Glu893Ter	p.E893*	ENST00000376406	NM_014641.2	893	Gaa/Taa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188932	32188932	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	41	741	0	ENST00000375023.3:c.622G>T	p.Gly208Cys	p.G208C	ENST00000375023	NM_004557.3	208	Ggc/Tgc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106547204	106547204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	99	235	0	ENST00000369096.4:c.441C>A	p.Phe147Leu	p.F147L	ENST00000369096	NM_001198.3	147	ttC/ttA																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026402	6026402	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	120	419	0	ENST00000265849.7:c.1994G>T	p.Arg665Ile	p.R665I	ENST00000265849	NM_000535.5	665	aGa/aTa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026547	6026547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	356	974	1	ENST00000265849.7:c.1849C>T	p.Pro617Ser	p.P617S	ENST00000265849	NM_000535.5	617	Ccc/Tcc																																																																															
ETV1	2115	MSKCC	GRCh37	7	14028674	14028674	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	128	333	0	ENST00000405192.2:c.4G>T	p.Asp2Tyr	p.D2Y	ENST00000405192	NM_001163147.1	2	Gat/Tat																																																																															
MET	4233	MSKCC	GRCh37	7	116339235	116339235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	84	342	0	ENST00000397752.3:c.97T>C	p.Ser33Pro	p.S33P	ENST00000397752	NM_000245.2	33	Tcc/Ccc																																																																															
BRAF	673	MSKCC	GRCh37	7	140482825	140482825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	186	522	1	ENST00000288602.6:c.1310G>A	p.Arg437Gln	p.R437Q	ENST00000288602	NM_004333.4	437	cGa/cAa																																																																															
EZH2	2146	MSKCC	GRCh37	7	148514413	148514413	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	40	482	0	ENST00000320356.2:c.1311G>A	p.Trp437Ter	p.W437*	ENST00000320356	NM_004456.4	437	tgG/tgA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874046	151874046	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	123	572	0	ENST00000262189.6:c.8492C>A	p.Ser2831Tyr	p.S2831Y	ENST00000262189	NM_170606.2	2831	tCt/tAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152008888	152008888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	107	312	0	ENST00000262189.6:c.734C>A	p.Ser245Tyr	p.S245Y	ENST00000262189	NM_170606.2	245	tCt/tAt																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345930	152345930	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	51	554	0	ENST00000359321.1:c.640C>T	p.Arg214Ter	p.R214*	ENST00000359321	NM_005431.1	214	Cga/Tga																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346247	152346247	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	150	549	0	ENST00000359321.1:c.323T>G	p.Ile108Ser	p.I108S	ENST00000359321	NM_005431.1	108	aTc/aGc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133268	38133268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	51	502	1	ENST00000317025.8:c.4205G>A	p.Arg1402His	p.R1402H	ENST00000317025	NM_023034.1	1402	cGc/cAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68939540	68939540	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	48	307	0	ENST00000288368.4:c.525G>T	p.Lys175Asn	p.K175N	ENST00000288368	NM_024870.2	175	aaG/aaT																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968198	68968198	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	29	570	0	ENST00000288368.4:c.1227C>A	p.Cys409Ter	p.C409*	ENST00000288368	NM_024870.2	409	tgC/tgA																																																																															
PREX2	80243	MSKCC	GRCh37	8	69028055	69028055	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	100	464	0	ENST00000288368.4:c.3214G>T	p.Asp1072Tyr	p.D1072Y	ENST00000288368	NM_024870.2	1072	Gac/Tac																																																																															
MYC	4609	MSKCC	GRCh37	8	128750813	128750813	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	151	529	0	ENST00000377970.2:c.350T>C	p.Val117Ala	p.V117A	ENST00000377970	NM_002467.4	117	gTg/gCg																																																																															
MYC	4609	MSKCC	GRCh37	8	128752662	128752662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	67	212	0	ENST00000377970.2:c.823G>A	p.Glu275Lys	p.E275K	ENST00000377970	NM_002467.4	275	Gaa/Aaa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911481	101911481	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	71	246	0	ENST00000374994.4:c.1406A>C	p.Lys469Thr	p.K469T	ENST00000374994	NM_004612.2	469	aAa/aCa																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127916212	127916212	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	212	517	0	ENST00000373547.4:c.432A>C	p.Lys144Asn	p.K144N	ENST00000373547	NM_002721.4	144	aaA/aaC																																																																															
RXRA	6256	MSKCC	GRCh37	9	137328356	137328356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	146	693	0	ENST00000481739.1:c.1285G>A	p.Gly429Arg	p.G429R	ENST00000481739	NM_002957.4	429	Ggg/Agg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44937668	44937668	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	211	251	0	ENST00000377967.4:c.2856C>A	p.Phe952Leu	p.F952L	ENST00000377967	NM_021140.2	952	ttC/ttA																																																																															
ATRX	546	MSKCC	GRCh37	X	76938995	76938995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	30	294	0	ENST00000373344.5:c.1753G>A	p.Glu585Lys	p.E585K	ENST00000373344	NM_000489.3	585	Gaa/Aaa																																																																															
ATRX	546	MSKCC	GRCh37	X	76939158	76939158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	207	281	0	ENST00000373344.5:c.1590G>T	p.Glu530Asp	p.E530D	ENST00000373344	NM_000489.3	530	gaG/gaT																																																																															
XIAP	331	MSKCC	GRCh37	X	123020327	123020327	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	22	221	0	ENST00000355640.3:c.815T>G	p.Phe272Cys	p.F272C	ENST00000355640		272	tTt/tGt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123182890	123182890	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	23	147	0	ENST00000218089.9:c.855G>T	p.Met285Ile	p.M285I	ENST00000218089	NM_001042749.1	285	atG/atT																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123480631	123480631	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	15	192	0	ENST00000371139.4:c.137+2T>C		p.X46_splice	ENST00000371139	NM_001114937.2	46																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0035434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	90	567	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577599	7577600	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0035434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	121	558	0	ENST00000269305.4:c.680_681dup	p.Asp228LeufsTer20	p.D228Lfs*20	ENST00000269305	NM_001126112.2	227	-/CT																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0035445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	23	298	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
RB1	5925	MSKCC	GRCh37	13	48939029	48939029	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0035445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	96	314	0	ENST00000267163.4:c.862-1G>A		p.X288_splice	ENST00000267163	NM_000321.2	288																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49420655	49420655	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	33	556	0	ENST00000301067.7:c.15094T>A	p.Cys5032Ser	p.C5032S	ENST00000301067	NM_003482.3	5032	Tgc/Agc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724415	43724415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	266	784	1	ENST00000382044.4:c.3652G>A	p.Asp1218Asn	p.D1218N	ENST00000382044	NM_001141980.1	1218	Gat/Aat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164995	47164995	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0035445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	159	413	0	ENST00000409792.3:c.1131T>G	p.Tyr377Ter	p.Y377*	ENST00000409792	NM_014159.6	377	taT/taG																																																																															
XPO1	7514	MSKCC	GRCh37	2	61725860	61725860	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	45	496	0	ENST00000401558.2:c.707T>A	p.Ile236Asn	p.I236N	ENST00000401558	NM_003400.3	236	aTt/aAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	23	507	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SRC	6714	MSKCC	GRCh37	20	36031750	36031750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	29	525	1	ENST00000358208.4:c.1579G>A	p.Glu527Lys	p.E527K	ENST00000358208		527	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971188	21971189	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0035486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	26	366	0	ENST00000304494.5:c.169_170del	p.Ala57ProfsTer62	p.A57Pfs*62	ENST00000304494	NM_000077.4	57	GCc/c																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952076	178952076	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1064793838		P-0035486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	16	334	0	ENST00000263967.3:c.3131A>G	p.Asn1044Ser	p.N1044S	ENST00000263967	NM_006218.2	1044	aAt/aGt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111012	193111012	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	23	199	0	ENST00000367435.3:c.545T>C	p.Ile182Thr	p.I182T	ENST00000367435	NM_024529.4	182	aTt/aCt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575109	48575109	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	19	387	1	ENST00000342988.3:c.303G>A	p.Trp101Ter	p.W101*	ENST00000342988	NM_005359.5	101	tgG/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	21	511	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453148	140453148	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	24	367	0	ENST00000288602.6:c.1787G>T	p.Gly596Val	p.G596V	ENST00000288602	NM_004333.4	596	gGt/gTt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468231	120468231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	31	660	1	ENST00000256646.2:c.4208C>A	p.Ala1403Asp	p.A1403D	ENST00000256646	NM_024408.3	1403	gCc/gAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984507	72984508	+	missense_variant	Missense_Mutation	DNP	TC	TC	AG			P-0035487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	32	799	2	ENST00000268489.5:c.3076_3077delinsCT	p.Glu1026Leu	p.E1026L	ENST00000268489	NM_006885.3	1026	GAg/CTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163822	47163823	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0035487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	31	578	0	ENST00000409792.3:c.2303_2304del	p.Val768GlyfsTer8	p.V768Gfs*8	ENST00000409792	NM_014159.6	768	gTG/g																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101904823	101904823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	20	387	0	ENST00000374994.4:c.811G>A	p.Gly271Ser	p.G271S	ENST00000374994	NM_004612.2	271	Ggt/Agt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0035489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	384	345	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	275	632	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																															
BCL10	8915	MSKCC	GRCh37	1	85741985	85741985	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	237	626	0	ENST00000370580.1:c.51G>C	p.Lys17Asn	p.K17N	ENST00000370580	NM_003921.4	17	aaG/aaC																																																																															
SESN3	143686	MSKCC	GRCh37	11	94923077	94923077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	68	606	0	ENST00000536441.1:c.391G>A	p.Glu131Lys	p.E131K	ENST00000536441	NM_144665.3	131	Gaa/Aaa																																																																															
HGF	3082	MSKCC	GRCh37	7	81334776	81334776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	67	508	0	ENST00000222390.5:c.1940G>A	p.Arg647Gln	p.R647Q	ENST00000222390	NM_000601.4	647	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	161	543	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273958	10273958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	176	720	0	ENST00000330684.3:c.311C>T	p.Thr104Met	p.T104M	ENST00000330684	NM_001134407.1	104	aCg/aTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56170877	56170877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	170	361	0	ENST00000399503.3:c.1705G>A	p.Val569Ile	p.V569I	ENST00000399503	NM_005921.1	569	Gtt/Att																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160706	56160706	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	98	330	0	ENST00000399503.3:c.980T>C	p.Phe327Ser	p.F327S	ENST00000399503	NM_005921.1	327	tTc/tCc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	120	309	3	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	260	605	14	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	196	455	6	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	130	369	2	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189926	66189926	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145811811		P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	93	302	0	ENST00000273854.3:c.3020G>A	p.Arg1007Gln	p.R1007Q	ENST00000273854	NM_004439.5	1007	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	79	240	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251754	212251754	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	22	318	0	ENST00000342788.4:c.3305T>G	p.Phe1102Cys	p.F1102C	ENST00000342788	NM_005235.2	1102	tTt/tGt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18699320	18699320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	22	293	0	ENST00000266497.5:c.3421C>A	p.Leu1141Ile	p.L1141I	ENST00000266497		1141	Ctt/Att																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641280	3641280	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140600202		P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	309	638	2	ENST00000294008.3:c.2359G>A	p.Glu787Lys	p.E787K	ENST00000294008	NM_032444.2	787	Gaa/Aaa																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134255	41134255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	77	387	0	ENST00000379561.5:c.1373C>T	p.Ala458Val	p.A458V	ENST00000379561	NM_002015.3	458	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	98	275	3	ENST00000257430.4:c.2805del	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/ta																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526672	106526672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	155	411	0	ENST00000359195.3:c.2965C>T	p.Pro989Ser	p.P989S	ENST00000359195	NM_002649.2	989	Cct/Tct																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652278	48652278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	518	587	13	ENST00000376670.3:c.949C>T	p.Arg317Trp	p.R317W	ENST00000376670	NM_002049.3	317	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	171	527	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0035534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	341	725	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0035534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	117	330	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	81	393	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508824	106508824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	216	485	0	ENST00000359195.3:c.818G>A	p.Arg273His	p.R273H	ENST00000359195	NM_002649.2	273	cGc/cAc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111097	193111099	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0035534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	67	298	0	ENST00000367435.3:c.633_635del	p.Arg211del	p.R211del	ENST00000367435	NM_024529.4	210	caGAGg/cag																																																																															
CIC	23152	MSKCC	GRCh37	19	42791587	42791587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	229	553	0	ENST00000575354.2:c.568C>T	p.Arg190Cys	p.R190C	ENST00000575354	NM_015125.3	190	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0035548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	154	554	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	17	539	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934578		P-0035548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	140	848	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112174868	112174868	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	34	338	0	ENST00000257430.4:c.3577C>T	p.Gln1193Ter	p.Q1193*	ENST00000257430	NM_000038.5	1193	Cag/Tag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992720	68992720	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182978151		P-0035548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	102	728	0	ENST00000288368.4:c.1685G>A	p.Arg562His	p.R562H	ENST00000288368	NM_024870.2	562	cGt/cAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274171	10274171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	53	591	0	ENST00000330684.3:c.98C>T	p.Ala33Val	p.A33V	ENST00000330684	NM_001134407.1	33	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175589	112175592	+	frameshift_variant	Frame_Shift_Del	DEL	CAAG	CAAG	-			P-0035548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	60	355	0	ENST00000257430.4:c.4300_4303del	p.Ser1434GlufsTer38	p.S1434Efs*38	ENST00000257430	NM_000038.5	1433	cCAAGc/cc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0035553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	199	505	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591145	67591154	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TACTTGATGT	TACTTGATGT	-			P-0035553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	119	296	0	ENST00000274335.5:c.1738_1745+2delTACTTGATGT		p.X580_splice	ENST00000274335		580																																																																																
RUNX1	861	MSKCC	GRCh37	21	36259321	36259321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	95	425	0	ENST00000300305.3:c.170C>T	p.Pro57Leu	p.P57L	ENST00000300305		57	cCg/cTg																																																																															
CBFB	865	MSKCC	GRCh37	16	67063648	67063663	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGACCGGCCCCACG	AGGGACCGGCCCCACG	-			P-0035553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	68	388	0	ENST00000412916.2:c.100_115del	p.Asp34AsnfsTer50	p.D34Nfs*50	ENST00000412916		33	AGGGACCGGCCCCACGag/ag																																																																															
NF1	4763	MSKCC	GRCh37	17	29559870	29559870	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	56	298	0	ENST00000358273.4:c.3467A>G	p.Asn1156Ser	p.N1156S	ENST00000358273	NM_001042492.2	1156	aAc/aGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873797	151873797	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	103	460	0	ENST00000262189.6:c.8741C>A	p.Ser2914Ter	p.S2914*	ENST00000262189	NM_170606.2	2914	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578247	7578247	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	104	606	0	ENST00000269305.4:c.602delT	p.Leu201CysfsTer46	p.L201Cfs*46	ENST00000269305	NM_001126112.2	201	tTg/tg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641214	3641214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	65	908	0	ENST00000294008.3:c.2425G>A	p.Glu809Lys	p.E809K	ENST00000294008	NM_032444.2	809	Gaa/Aaa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28644632	28644632	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	48	581	0	ENST00000241453.7:c.161C>A	p.Pro54His	p.P54H	ENST00000241453	NM_004119.2	54	cCc/cAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	224	449	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178685	56178685	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	101	229	0	ENST00000399503.3:c.3658C>T	p.Gln1220Ter	p.Q1220*	ENST00000399503	NM_005921.1	1220	Caa/Taa																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793008	33793010	+	inframe_deletion	In_Frame_Del	DEL	CGC	CGC	-			P-0035630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	10	65	1	ENST00000498907.2:c.311_313del	p.Gly104del	p.G104del	ENST00000498907	NM_004364.3	104	gGCGac/gac																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56167789	56167790	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGA			P-0035630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	440	435	0	ENST00000399503.3:c.1356_1359dup	p.Glu454Ter	p.E454*	ENST00000399503	NM_005921.1	452	gat/gATGAat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	261	538	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0035918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	103	361	2	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0035918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	177	530	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473779	67473779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	170	502	0	ENST00000327367.4:c.859C>T	p.Arg287Trp	p.R287W	ENST00000327367	NM_005902.3	287	Cgg/Tgg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88681326	88681326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	136	383	0	ENST00000372037.3:c.1216C>T	p.Arg406Cys	p.R406C	ENST00000372037	NM_004329.2	406	Cgc/Tgc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710590	114710610	+	inframe_deletion	In_Frame_Del	DEL	CGAACAGGAGGAGAAGAGCTC	CGAACAGGAGGAGAAGAGCTC	-			P-0035918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	146	350	0	ENST00000543371.1:c.79_99del	p.Gln27_Glu33del	p.Q27_E33del	ENST00000543371	NM_001198531.1	25	ggCGAACAGGAGGAGAAGAGCTCc/ggc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223356	2223356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	234	670	2	ENST00000326181.6:c.968C>T	p.Ser323Leu	p.S323L	ENST00000326181	NM_032271.2	323	tCg/tTg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374935	45374935	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	254	594	0	ENST00000262160.6:c.908C>A	p.Thr303Lys	p.T303K	ENST00000262160	NM_005901.5	303	aCa/aAa																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169985763	169985763	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	62	591	0	ENST00000295797.4:c.425C>G	p.Thr142Ser	p.T142S	ENST00000295797	NM_002740.5	142	aCt/aGt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0036367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	51	421	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
STAG2	10735	MSKCC	GRCh37	X	123200209	123200209	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	54	476	0	ENST00000218089.9:c.2188del	p.Val730LeufsTer11	p.V730Lfs*11	ENST00000218089	NM_001042749.1	730	Gtt/tt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0036506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	96	434	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
MGA	23269	MSKCC	GRCh37	15	42021422	42021422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	26	338	0	ENST00000219905.7:c.3718C>T	p.Arg1240Ter	p.R1240*	ENST00000219905	NM_001164273.1	1240	Cga/Tga																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99136557	99136557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	104	493	1	ENST00000074304.5:c.46G>A	p.Ala16Thr	p.A16T	ENST00000074304	NM_001134224.1	16	Gca/Aca																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138400816	138400816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	54	255	0	ENST00000289153.2:c.2497G>C	p.Asp833His	p.D833H	ENST00000289153	NM_006219.2	833	Gat/Cat																																																																															
TEK	7010	MSKCC	GRCh37	9	27172676	27172676	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	116	450	1	ENST00000380036.4:c.691G>T	p.Gly231Cys	p.G231C	ENST00000380036	NM_000459.3	231	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0036616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	71	473	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0036616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	193	556	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0036616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	194	574	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151842334	151842334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	56	217	0	ENST00000262189.6:c.14078G>A	p.Arg4693Gln	p.R4693Q	ENST00000262189	NM_170606.2	4693	cGa/cAa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434581	99434581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	109	458	1	ENST00000268035.6:c.668C>T	p.Ala223Val	p.A223V	ENST00000268035	NM_000875.3	223	gCg/gTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17946820	17946820	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	349	608	0	ENST00000458235.1:c.1827C>A	p.Asp609Glu	p.D609E	ENST00000458235	NM_000215.3	609	gaC/gaA																																																																															
APC	324	MSKCC	GRCh37	5	112175764	112175770	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCACG	TGCCACG	CCCACC			P-0036616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	39	265	0	ENST00000257430.4:c.4473_4479delinsCCCACC	p.Ala1492ProfsTer15	p.A1492Pfs*15	ENST00000257430	NM_000038.5	1491	ttTGCCACG/ttCCCACC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			589	396	465	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108143521	108143521	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			521	203	611	0	ENST00000278616.4:c.3226C>T	p.Gln1076Ter	p.Q1076*	ENST00000278616	NM_000051.3	1076	Caa/Taa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348199	348199	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			504	166	689	0	ENST00000262320.3:c.1307A>T	p.His436Leu	p.H436L	ENST00000262320	NM_003502.3	436	cAc/cTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220702	1220703	+	missense_variant	Missense_Mutation	DNP	GG	GG	TC			P-0036687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			348	146	554	0	ENST00000326873.7:c.720_721delinsTC	p.Ala241Pro	p.A241P	ENST00000326873	NM_000455.4	240	tcGGct/tcTCct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0036713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	173	372	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0036713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	91	651	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152130	11152130	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	57	509	0	ENST00000344626.4:c.4318C>T	p.Gln1440Ter	p.Q1440*	ENST00000344626	NM_003072.3	1440	Cag/Tag																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185181372	185181374	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0036713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	53	278	0	ENST00000265026.3:c.1316_1318del	p.Lys439del	p.K439del	ENST00000265026	NM_004721.4	438	gAGAag/gag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251927	153251927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	27	559	0	ENST00000281708.4:c.1079G>A	p.Arg360Lys	p.R360K	ENST00000281708	NM_033632.3	360	aGa/aAa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	288	473	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021818	71021818	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs869025203		P-0036714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	133	216	0	ENST00000318789.4:c.1540C>T	p.Arg514Cys	p.R514C	ENST00000318789	NM_032682.5	514	Cgt/Tgt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416663	416663	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	175	356	0	ENST00000399788.2:c.3887T>C	p.Ile1296Thr	p.I1296T	ENST00000399788	NM_001042603.1	1296	aTc/aCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0036723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	66	463	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0036723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	208	567	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	70	342	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023141	27023143	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0036723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	10	28	0	ENST00000324856.7:c.258_260del	p.Gly87del	p.G87del	ENST00000324856	NM_006015.4	83	GGC/-																																																																															
BRAF	673	MSKCC	GRCh37	7	140477837	140477851	+	inframe_deletion	In_Frame_Del	DEL	TAGGTGCTGTCACAT	TAGGTGCTGTCACAT	-			P-0036723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	35	523	0	ENST00000288602.6:c.1457_1471del	p.Asn486_Pro490del	p.N486_P490del	ENST00000288602	NM_004333.4	486	aATGTGACAGCACCTAca/aca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0036723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	84	199	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	70	349	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	166	573	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971035	21971035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	83	540	0	ENST00000304494.5:c.323A>G	p.Asp108Gly	p.D108G	ENST00000304494	NM_000077.4	108	gAt/gGt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998919	11998919	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	56	238	0	ENST00000353533.5:c.421G>T	p.Glu141Ter	p.E141*	ENST00000353533	NM_003010.3	141	Gaa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584533	48584533	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	57	331	0	ENST00000342988.3:c.706G>T	p.Gly236Ter	p.G236*	ENST00000342988	NM_005359.5	236	Gga/Tga																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0036749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	101	267	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220612	1220612	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	263	675	1	ENST00000326873.7:c.630C>A	p.Cys210Ter	p.C210*	ENST00000326873	NM_000455.4	210	tgC/tgA																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53230844	53230844	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	58	396	0	ENST00000375401.3:c.1949A>G	p.Lys650Arg	p.K650R	ENST00000375401	NM_004187.3	650	aAg/aGg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222144	5222144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	153	588	0	ENST00000357368.4:c.3191C>T	p.Thr1064Ile	p.T1064I	ENST00000357368	NM_002850.3	1064	aCa/aTa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624260	89624284	+	frameshift_variant	Frame_Shift_Del	DEL	AACAAAAGGAGATATCAAGAGGATG	AACAAAAGGAGATATCAAGAGGATG	-			P-0036757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	71	301	0	ENST00000371953.3:c.34_58del	p.Asn12AspfsTer4	p.N12Dfs*4	ENST00000371953	NM_000314.4	12	AACAAAAGGAGATATCAAGAGGATGga/ga																																																																															
ATM	472	MSKCC	GRCh37	11	108224522	108224523	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0036757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	105	289	1	ENST00000278616.4:c.8701_8702delinsTT	p.Pro2901Phe	p.P2901F	ENST00000278616	NM_000051.3	2901	CCt/TTt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005728	150005728	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0036757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	34	293	0	ENST00000253339.5:c.497G>C	p.Gly166Ala	p.G166A	ENST00000253339		166	gGg/gCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	201	348	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	48	181	0	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920434	114920434	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	173	431	0	ENST00000543371.1:c.1375T>C	p.Trp459Arg	p.W459R	ENST00000543371	NM_001198531.1	459	Tgg/Cgg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0036760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	112	294	0				ENST00000310581	NM_198253.2																																																																																	
CSDE1	7812	MSKCC	GRCh37	1	115276456	115276456	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	158	537	0	ENST00000438362.2:c.872T>C	p.Val291Ala	p.V291A	ENST00000438362	NM_001242891.1	291	gTc/gCc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911621	114911621	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	152	332	0	ENST00000543371.1:c.1139T>A	p.Ile380Asn	p.I380N	ENST00000543371	NM_001198531.1	380	aTc/aAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212483957	212483957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	23	443	0	ENST00000342788.4:c.2246C>T	p.Ala749Val	p.A749V	ENST00000342788	NM_005235.2	749	gCt/gTt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871197	35871197	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200373233		P-0036760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	93	277	1	ENST00000303115.3:c.419G>A	p.Arg140Gln	p.R140Q	ENST00000303115	NM_002185.3	140	cGg/cAg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020536	69020536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	469	469	0	ENST00000288368.4:c.2908C>T	p.His970Tyr	p.H970Y	ENST00000288368	NM_024870.2	970	Cat/Tat																																																																															
AR	367	MSKCC	GRCh37	X	66766112	66766112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	61	541	0	ENST00000374690.3:c.1124C>T	p.Pro375Leu	p.P375L	ENST00000374690	NM_000044.3	375	cCg/cTg																																																																															
TP63	8626	MSKCC	GRCh37	3	189587118	189587118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	82	272	0	ENST00000264731.3:c.1135C>T	p.Arg379Cys	p.R379C	ENST00000264731	NM_003722.4	379	Cgt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108198428	108198428	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	108	345	0	ENST00000278616.4:c.7032G>A	p.Trp2344Ter	p.W2344*	ENST00000278616	NM_000051.3	2344	tgG/tgA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060786	38060787	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATC			P-0036791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	173	743	0	ENST00000250448.2:c.1202_1203insGATG	p.Ile402MetfsTer14	p.I402Mfs*14	ENST00000250448	NM_004496.3	401	tcc/tcGATGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0036806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	105	582	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
STK40	83931	MSKCC	GRCh37	1	36820014	36820014	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	89	624	0	ENST00000373129.3:c.574A>C	p.Asn192His	p.N192H	ENST00000373129	NM_032017.1	192	Aat/Cat																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81927340	81927340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	100	606	0	ENST00000359376.3:c.1013G>A	p.Ser338Asn	p.S338N	ENST00000359376	NM_002661.3	338	aGc/aAc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202704	128202704	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0036806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	113	692	0	ENST00000341105.2:c.1016T>A	p.Leu339Gln	p.L339Q	ENST00000341105	NM_032638.4	339	cTg/cAg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131923617	131923617	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0036806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	33	243	0	ENST00000265335.6:c.891del	p.Gln298LysfsTer7	p.Q298Kfs*7	ENST00000265335		296	gTt/gt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	66	304	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	36	363	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	202	615	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465373	120465373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	98	494	0	ENST00000256646.2:c.4888C>T	p.Arg1630Cys	p.R1630C	ENST00000256646	NM_024408.3	1630	Cgc/Tgc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	120	494	0	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139831	55139831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	118	375	1	ENST00000257290.5:c.1492G>A	p.Ala498Thr	p.A498T	ENST00000257290	NM_006206.4	498	Gcc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092815	27092815	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	49	501	0	ENST00000324856.7:c.2840delC	p.Pro947HisfsTer21	p.P947Hfs*21	ENST00000324856	NM_006015.4	946	Ccc/cc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914070	32914070	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	29	448	0	ENST00000380152.3:c.5583delA	p.Val1862Ter	p.V1862*	ENST00000380152		1860	Aaa/aa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040630	47040630	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	68	419	0	ENST00000329236.7:c.1031A>G	p.Glu344Gly	p.E344G	ENST00000329236	NM_001204466.1	344	gAg/gGg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	25	477	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	44	485	0	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																																																															
BRAF	673	MSKCC	GRCh37	7	140482926	140482927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs777474487		P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	68	526	0	ENST00000288602.6:c.1208dup	p.Ala404CysfsTer9	p.A404Cfs*9	ENST00000288602	NM_004333.4	403	cct/ccCt																																																																															
JUN	3725	MSKCC	GRCh37	1	59247894	59247894	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	209	842	0	ENST00000371222.2:c.849del	p.Val284Ter	p.V284*	ENST00000371222	NM_002228.3	283	aaA/aa																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841231	15841236	+	inframe_deletion	In_Frame_Del	DEL	AGCCGG	AGCCGG	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	54	328	0	ENST00000307771.7:c.1338_1343delGAGCCG	p.Ser447_Arg448del	p.S447_R448del	ENST00000307771	NM_005089.3	439	AGCCGG/-																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434182	12434182	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1187529076		P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	88	449	0	ENST00000287820.6:c.556del	p.Ser186ValfsTer47	p.S186Vfs*47	ENST00000287820	NM_015869.4	184	Aaa/aa																																																																															
ATM	472	MSKCC	GRCh37	11	108196143	108196143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	85	501	0	ENST00000278616.4:c.6679C>T	p.Arg2227Cys	p.R2227C	ENST00000278616	NM_000051.3	2227	Cgc/Tgc																																																																															
FH	2271	MSKCC	GRCh37	1	241667492	241667492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	18	247	0	ENST00000366560.3:c.958G>A	p.Ala320Thr	p.A320T	ENST00000366560	NM_000143.3	320	Gct/Act																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346270	89346270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	57	351	0	ENST00000301030.4:c.6680C>T	p.Pro2227Leu	p.P2227L	ENST00000301030	NM_001256183.1	2227	cCg/cTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291084	10291084	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	55	648	0	ENST00000340748.4:c.387del	p.Lys130AsnfsTer129	p.K130Nfs*129	ENST00000340748		129	ccC/cc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348443	89348443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	57	701	1	ENST00000301030.4:c.4507G>A	p.Ala1503Thr	p.A1503T	ENST00000301030	NM_001256183.1	1503	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	37	694	0	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127915852	127915852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	73	479	0	ENST00000373547.4:c.629G>A	p.Arg210Gln	p.R210Q	ENST00000373547	NM_002721.4	210	cGa/cAa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120043	70120043	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	14	39	0	ENST00000245479.2:c.1049del	p.Pro350HisfsTer33	p.P350Hfs*33	ENST00000245479	NM_000346.3	349	Ccc/cc																																																																															
ARAF	369	MSKCC	GRCh37	X	47424713	47424713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	40	545	1	ENST00000377045.4:c.521G>A	p.Arg174His	p.R174H	ENST00000377045	NM_001654.4	174	cGc/cAc																																																																															
MSI2	124540	MSKCC	GRCh37	17	55693419	55693419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	70	572	0	ENST00000284073.2:c.626C>T	p.Ala209Val	p.A209V	ENST00000284073	NM_138962.2	209	gCg/gTg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31322882	31322882	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	44	535	0	ENST00000412585.2:c.1012+2T>C		p.X338_splice	ENST00000412585	NM_005514.6	338																																																																																
HLA-B	3106	MSKCC	GRCh37	6	31323268	31323268	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	28	279	1	ENST00000412585.2:c.721T>C	p.Trp241Arg	p.W241R	ENST00000412585	NM_005514.6	241	Tgg/Cgg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11303204	11303204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	102	514	1	ENST00000361445.4:c.1379G>A	p.Arg460Gln	p.R460Q	ENST00000361445	NM_004958.3	460	cGa/cAa																																																																															
CDC42	998	MSKCC	GRCh37	1	22412996	22412996	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	13	174	0	ENST00000344548.3:c.247delT	p.Ser83GlnfsTer11	p.S83Qfs*11	ENST00000344548	NM_001039802.1	81	tgT/tg																																																																															
SDHC	6391	MSKCC	GRCh37	1	161310397	161310397	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	32	514	0	ENST00000367975.2:c.193A>G	p.Met65Val	p.M65V	ENST00000367975	NM_003001.3	65	Atg/Gtg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625161	69625161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	131	642	0	ENST00000334134.2:c.632G>A	p.Arg211Gln	p.R211Q	ENST00000334134	NM_005247.2	211	cGg/cAg																																																																															
RAD52	5893	MSKCC	GRCh37	12	1040432	1040432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	109	663	0	ENST00000358495.3:c.140T>G	p.Leu47Arg	p.L47R	ENST00000358495	NM_134424.2	47	cTg/cGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445222	49445222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	51	747	2	ENST00000301067.7:c.2244G>T	p.Glu748Asp	p.E748D	ENST00000301067	NM_003482.3	748	gaG/gaT																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514713	103514713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	25	304	1	ENST00000355739.4:c.1214C>T	p.Ala405Val	p.A405V	ENST00000355739	NM_000123.3	405	gCt/gTt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678367	88678367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	62	814	0	ENST00000360948.2:c.1169C>T	p.Thr390Ile	p.T390I	ENST00000360948	NM_001012338.2	390	aCc/aTc																																																																															
CDH1	999	MSKCC	GRCh37	16	68849586	68849586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	67	553	1	ENST00000261769.5:c.1489G>A	p.Glu497Lys	p.E497K	ENST00000261769	NM_004360.3	497	Gag/Aag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822585	72822586	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	57	507	0	ENST00000268489.5:c.9588_9589dup	p.Gln3197ProfsTer45	p.Q3197Pfs*45	ENST00000268489	NM_006885.3	3197	cag/cCCag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993508	72993509	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	85	596	0	ENST00000268489.5:c.536dup	p.Lys180GlnfsTer30	p.K180Qfs*30	ENST00000268489	NM_006885.3	179	ggc/ggGc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349045	89349045	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	159	838	0	ENST00000301030.4:c.3905A>C	p.Glu1302Ala	p.E1302A	ENST00000301030	NM_001256183.1	1302	gAg/gCg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573564	48573564	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	23	276	0	ENST00000342988.3:c.153del	p.Asp52MetfsTer6	p.D52Mfs*6	ENST00000342988	NM_005359.5	50	Aaa/aa																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260057	19260057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	118	711	2	ENST00000162023.5:c.236G>A	p.Arg79His	p.R79H	ENST00000162023		79	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222937	36222938	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	84	799	1	ENST00000222270.7:c.5572dup	p.Arg1858ProfsTer114	p.R1858Pfs*114	ENST00000222270	NM_014727.1	1856	gcc/gCcc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26029096	26029096	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	39	303	0	ENST00000435504.4:c.252+2T>C		p.X84_splice	ENST00000435504		84																																																																																
XPO1	7514	MSKCC	GRCh37	2	61706017	61706017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	79	654	1	ENST00000401558.2:c.3154C>T	p.Arg1052Cys	p.R1052C	ENST00000401558	NM_003400.3	1052	Cgt/Tgt																																																																															
CASP8	841	MSKCC	GRCh37	2	202149571	202149571	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	79	423	0	ENST00000358485.4:c.1012T>G	p.Phe338Val	p.F338V	ENST00000358485	NM_001080125.1	338	Ttt/Gtt																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204737525	204737525	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	37	248	1	ENST00000302823.3:c.662C>A	p.Pro221His	p.P221H	ENST00000302823	NM_005214.4	221	cCc/cAc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46277816	46277816	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	90	358	0	ENST00000371998.3:c.3614T>G	p.Val1205Gly	p.V1205G	ENST00000371998		1205	gTg/gGg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134885846	134885846	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs770834786		P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	56	380	0	ENST00000398015.3:c.1757G>A	p.Arg586Gln	p.R586Q	ENST00000398015	NM_004441.4	586	cGa/cAa																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430402	181430402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	156	582	1	ENST00000325404.1:c.254C>T	p.Thr85Met	p.T85M	ENST00000325404	NM_003106.3	85	aCg/aTg																																																																															
BCL6	604	MSKCC	GRCh37	3	187447010	187447010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	151	705	0	ENST00000232014.4:c.1183C>T	p.Pro395Ser	p.P395S	ENST00000232014	NM_001130845.1	395	Cct/Tct																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803346	1803346	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	94	616	0	ENST00000260795.2:c.616-1G>A		p.X206_splice	ENST00000260795		206																																																																																
FAT1	2195	MSKCC	GRCh37	4	187524141	187524141	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	111	403	0	ENST00000441802.2:c.11398C>A	p.Pro3800Thr	p.P3800T	ENST00000441802	NM_005245.3	3800	Cct/Act																																																																															
TERT	7015	MSKCC	GRCh37	5	1295023	1295023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	33	46	0	ENST00000310581.5:c.82G>A	p.Val28Met	p.V28M	ENST00000310581	NM_198253.2	28	Gtg/Atg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176618957	176618957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	63	503	1	ENST00000439151.2:c.1000C>T	p.Arg334Cys	p.R334C	ENST00000439151	NM_022455.4	334	Cgc/Tgc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911080	29911081	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	178	707	0	ENST00000376809.5:c.380dup	p.Ser129ValfsTer48	p.S129Vfs*48	ENST00000376809	NM_002116.7	127	gtg/gTtg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020438	69020438	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	140	590	0	ENST00000288368.4:c.2810A>G	p.Asn937Ser	p.N937S	ENST00000288368	NM_024870.2	937	aAc/aGc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8331686	8331686	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	58	440	0	ENST00000356435.5:c.5430G>T	p.Glu1810Asp	p.E1810D	ENST00000356435		1810	gaG/gaT																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907095	101907095	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	49	369	0	ENST00000374994.4:c.1055T>C	p.Leu352Ser	p.L352S	ENST00000374994	NM_004612.2	352	tTa/tCa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101910053	101910053	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	37	238	0	ENST00000374994.4:c.1374del	p.Trp458CysfsTer7	p.W458Cfs*7	ENST00000374994	NM_004612.2	458	tGg/tg																																																																															
ABL1	25	MSKCC	GRCh37	9	133760804	133760804	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs138480160		P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	98	585	0	ENST00000318560.5:c.3127A>G	p.Ile1043Val	p.I1043V	ENST00000318560	NM_005157.4	1043	Atc/Gtc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44820633	44820633	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	34	359	0	ENST00000377967.4:c.333del	p.Ala112HisfsTer68	p.A112Hfs*68	ENST00000377967	NM_021140.2	110	ccA/cc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045778	47045778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	138	692	2	ENST00000329236.7:c.2425C>T	p.Pro809Ser	p.P809S	ENST00000329236	NM_001204466.1	809	Cct/Tct																																																																															
AR	367	MSKCC	GRCh37	X	66863117	66863117	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	42	642	1	ENST00000374690.3:c.1636C>A	p.His546Asn	p.H546N	ENST00000374690	NM_000044.3	546	Cat/Aat																																																																															
MED12	9968	MSKCC	GRCh37	X	70353058	70353058	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	40	421	0	ENST00000374080.3:c.4613A>G	p.Asn1538Ser	p.N1538S	ENST00000374080		1538	aAc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	201	760	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0036848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	69	340	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584708	48584708	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0036848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	119	417	0	ENST00000342988.3:c.788-2A>T		p.X263_splice	ENST00000342988	NM_005359.5	263																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27023903	27023904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	30	111	0	ENST00000324856.7:c.1015dup	p.Ala339GlyfsTer61	p.A339Gfs*61	ENST00000324856	NM_006015.4	337	tgg/tGgg																																																																															
SMYD3	64754	MSKCC	GRCh37	1	245912913	245912913	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	150	459	0	ENST00000388985.4:c.1239T>G	p.Asp413Glu	p.D413E	ENST00000388985		413	gaT/gaG																																																																															
FLT3	2322	MSKCC	GRCh37	13	28623790	28623790	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs200102131		P-0036848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	42	620	0	ENST00000241453.7:c.864A>C	p.Glu288Asp	p.E288D	ENST00000241453	NM_004119.2	288	gaA/gaC																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528147	157528147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	143	609	1	ENST00000346085.5:c.5872G>A	p.Val1958Met	p.V1958M	ENST00000346085	NM_020732.3	1958	Gtg/Atg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945049	151945049	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	24	641	1	ENST00000262189.6:c.2470G>T	p.Gly824Cys	p.G824C	ENST00000262189	NM_170606.2	824	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0036876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	285	658	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106164061	106164061	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	58	358	0	ENST00000380013.4:c.3571C>G	p.Gln1191Glu	p.Q1191E	ENST00000380013	NM_001127208.2	1191	Cag/Gag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830976	72830976	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	55	558	0	ENST00000268489.5:c.5605C>T	p.Gln1869Ter	p.Q1869*	ENST00000268489	NM_006885.3	1869	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629120	187629120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	68	570	0	ENST00000441802.2:c.1862C>T	p.Ser621Leu	p.S621L	ENST00000441802	NM_005245.3	621	tCg/tTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829754	72829754	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	91	729	0	ENST00000268489.5:c.6827C>G	p.Ser2276Cys	p.S2276C	ENST00000268489	NM_006885.3	2276	tCt/tGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830987	72830987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	59	561	0	ENST00000268489.5:c.5594C>T	p.Ser1865Phe	p.S1865F	ENST00000268489	NM_006885.3	1865	tCt/tTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831842	72831842	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	106	832	0	ENST00000268489.5:c.4739C>A	p.Ser1580Ter	p.S1580*	ENST00000268489	NM_006885.3	1580	tCa/tAa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751601	57751601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	36	261	2	ENST00000274289.3:c.1390G>A	p.Glu464Lys	p.E464K	ENST00000274289	NM_006622.3	464	Gaa/Aaa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180041078	180041078	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	78	692	0	ENST00000261937.6:c.3321C>G	p.Ile1107Met	p.I1107M	ENST00000261937	NM_182925.4	1107	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0036881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	104	745	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0036881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	95	438	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0036881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	148	575	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
MITF	4286	MSKCC	GRCh37	3	69990481	69990481	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs201247895		P-0036881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	41	501	0	ENST00000352241.4:c.761C>T	p.Thr254Met	p.T254M	ENST00000352241	NM_198159.2	254	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112090657	112090657	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs145945630		P-0036881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	78	372	1	ENST00000257430.4:c.70C>T	p.Arg24Ter	p.R24*	ENST00000257430	NM_000038.5	24	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224532	36224532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759167832		P-0036881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	149	965	2	ENST00000222270.7:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000222270	NM_014727.1	2332	Cgt/Tgt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851561	63851561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	130	683	0	ENST00000279873.7:c.2339G>A	p.Arg780Gln	p.R780Q	ENST00000279873	NM_032199.2	780	cGa/cAa																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43745205	43745205	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0036881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	111	606	0	ENST00000523873.1:c.119-1G>A		p.X40_splice	ENST00000523873		40																																																																																
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0036909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	236	767	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	231	610	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242470	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	160	426	0	ENST00000275493.2:c.2240T>C	p.Leu747Ser	p.L747S	ENST00000275493	NM_005228.3	747	tTa/tCa																																																																															
RARA	5914	MSKCC	GRCh37	17	38510648	38510648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	238	635	1	ENST00000254066.5:c.902G>T	p.Gly301Val	p.G301V	ENST00000254066	NM_000964.3	301	gGc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0036923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	51	494	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0036923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	25	380	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0036969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	602	514	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0036969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	217	661	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5208016	5208016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	11	699	1	ENST00000357368.4:c.5695C>T	p.Arg1899Trp	p.R1899W	ENST00000357368	NM_002850.3	1899	Cgg/Tgg																																																																															
ALK	238	MSKCC	GRCh37	2	30143188	30143188	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	20	367	0	ENST00000389048.3:c.338G>T	p.Gly113Val	p.G113V	ENST00000389048	NM_004304.4	113	gGt/gTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045469	47045470	+	stop_gained	Nonsense_Mutation	DNP	GA	GA	AT			P-0036969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	64	240	0	ENST00000329236.7:c.2202_2203delinsAT	p.Met734_Lys735delinsIleTer	p.M734_K735delinsI*	ENST00000329236	NM_001204466.1	734	atGAag/atATag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	27	502	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0036976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	37	690	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492817	56492817	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	56	570	0	ENST00000407977.2:c.122C>A	p.Ser41Ter	p.S41*	ENST00000407977		41	tCa/tAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	166	437	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0036999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	101	274	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7577531	7577531	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	378	604	0	ENST00000269305.4:c.750delC	p.Ile251SerfsTer94	p.I251Sfs*94	ENST00000269305	NM_001126112.2	250	ccC/cc																																																																															
ATM	472	MSKCC	GRCh37	11	108151895	108151895	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0036999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	121	306	0	ENST00000278616.4:c.3576G>C	p.Lys1192Asn	p.K1192N	ENST00000278616	NM_000051.3	1192	aaG/aaC																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146710	185146710	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	201	582	0	ENST00000265026.3:c.341A>G	p.Glu114Gly	p.E114G	ENST00000265026	NM_004721.4	114	gAa/gGa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526390	31526390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1273	86	868	0	ENST00000344624.3:c.650G>C	p.Ser217Thr	p.S217T	ENST00000344624		217	aGt/aCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	16	417	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112173387	112173387	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	38	286	0	ENST00000257430.4:c.2096G>A	p.Trp699Ter	p.W699*	ENST00000257430	NM_000038.5	699	tGg/tAg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610119	81610119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	55	417	0	ENST00000298171.2:c.1717G>A	p.Asp573Asn	p.D573N	ENST00000298171	NM_000369.2	573	Gac/Aac																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202968	16202968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	189	339	1	ENST00000375759.3:c.676C>T	p.Arg226Trp	p.R226W	ENST00000375759	NM_015001.2	226	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255718	16255718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	26	229	0	ENST00000375759.3:c.2983G>A	p.Ala995Thr	p.A995T	ENST00000375759	NM_015001.2	995	Gca/Aca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260395	16260395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	163	357	0	ENST00000375759.3:c.7660G>A	p.Val2554Ile	p.V2554I	ENST00000375759	NM_015001.2	2554	Gtc/Atc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36938264	36938264	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150616658		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	263	523	0	ENST00000361632.4:c.697C>T	p.Arg233Trp	p.R233W	ENST00000361632		233	Cgg/Tgg																																																																															
BCL10	8915	MSKCC	GRCh37	1	85736510	85736511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs387906351		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	109	262	2	ENST00000370580.1:c.136dup	p.Ile46AsnfsTer4	p.I46Nfs*4	ENST00000370580	NM_003921.4	46	ata/aAta																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849069	156849069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	302	566	0	ENST00000524377.1:c.1961G>A	p.Arg654His	p.R654H	ENST00000524377	NM_002529.3	654	cGc/cAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	333	273	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633626	69633626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	52	51	0	ENST00000334134.2:c.76C>T	p.Arg26Trp	p.R26W	ENST00000334134	NM_005247.2	26	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108196879	108196880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	125	259	0	ENST00000278616.4:c.6908dupA	p.Glu2304GlyfsTer69	p.E2304Gfs*69	ENST00000278616	NM_000051.3	2301	gca/gcAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307394	118307394	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	18	23	0	ENST00000534358.1:c.173del	p.Pro58ArgfsTer92	p.P58Rfs*92	ENST00000534358	NM_005933.3	56	tCc/tc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871044	12871044	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	126	183	0	ENST00000228872.4:c.275delC	p.Pro92ArgfsTer27	p.P92Rfs*27	ENST00000228872	NM_004064.3	91	Ccc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	120	316	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432375	49432375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	283	522	0	ENST00000301067.7:c.8764C>T	p.Arg2922Trp	p.R2922W	ENST00000301067	NM_003482.3	2922	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	285	512	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482363	56482363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	218	420	0	ENST00000267101.3:c.911C>T	p.Ala304Val	p.A304V	ENST00000267101	NM_001982.3	304	gCc/gTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133233793	133233794	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	246	526	0	ENST00000320574.5:c.3510dup	p.Leu1171ThrfsTer6	p.L1171Tfs*6	ENST00000320574	NM_006231.2	1170	-/A																																																																															
POLE	5426	MSKCC	GRCh37	12	133253208	133253208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	176	373	0	ENST00000320574.5:c.833C>T	p.Thr278Met	p.T278M	ENST00000320574	NM_006231.2	278	aCg/aTg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609958	81609958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	100	261	0	ENST00000298171.2:c.1556G>A	p.Arg519His	p.R519H	ENST00000298171	NM_000369.2	519	cGc/cAc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570459	95570459	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	17	197	0	ENST00000343455.3:c.3274C>A	p.Pro1092Thr	p.P1092T	ENST00000343455	NM_177438.2	1092	Cct/Act																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	101	299	11	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2221325	2221325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	270	496	0	ENST00000326181.6:c.409G>A	p.Val137Ile	p.V137I	ENST00000326181	NM_032271.2	137	Gtc/Atc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779727	3779727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	207	439	0	ENST00000262367.5:c.5321G>A	p.Arg1774His	p.R1774H	ENST00000262367	NM_004380.2	1774	cGc/cAc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30134428	30134428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	288	455	0	ENST00000263025.4:c.103C>T	p.Pro35Ser	p.P35S	ENST00000263025	NM_002746.2	35	Ccg/Tcg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782295	56782295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	170	309	0	ENST00000308159.5:c.136C>T	p.Arg46Cys	p.R46C	ENST00000308159	NM_014669.4	46	Cgt/Tgt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	133	269	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832557	72832557	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141100730		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	180	301	0	ENST00000268489.5:c.4024G>A	p.Gly1342Arg	p.G1342R	ENST00000268489	NM_006885.3	1342	Gga/Aga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845477	72845477	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	175	346	0	ENST00000268489.5:c.3863C>T	p.Thr1288Met	p.T1288M	ENST00000268489	NM_006885.3	1288	aCg/aTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81979857	81979857	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764693069		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	178	305	0	ENST00000359376.3:c.3559C>T	p.Arg1187Trp	p.R1187W	ENST00000359376	NM_002661.3	1187	Cgg/Tgg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350411	89350411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	276	573	0	ENST00000301030.4:c.2539G>A	p.Asp847Asn	p.D847N	ENST00000301030	NM_001256183.1	847	Gat/Aat																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351703	89351703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	349	522	0	ENST00000301030.4:c.1247C>T	p.Ala416Val	p.A416V	ENST00000301030	NM_001256183.1	416	gCg/gTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805104	89805104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	213	338	0	ENST00000389301.3:c.4273C>T	p.Arg1425Cys	p.R1425C	ENST00000389301	NM_000135.2	1425	Cgt/Tgt																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110597	8110597	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	257	404	0	ENST00000585124.1:c.295A>G	p.Ser99Gly	p.S99G	ENST00000585124	NM_004217.3	99	Agc/Ggc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41251830	41251830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	214	478	0	ENST00000357654.3:c.509G>A	p.Arg170Gln	p.R170Q	ENST00000357654	NM_007294.3	170	cGg/cAg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47677762	47677762	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1380705599		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	119	266	0	ENST00000347630.2:c.1103G>A	p.Arg368His	p.R368H	ENST00000347630	NM_001007230.1	368	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	247	453	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440904	56440904	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1458799446		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	290	464	1	ENST00000407977.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000407977		145	Cga/Tga																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58725428	58725429	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	23	362	0	ENST00000305921.3:c.1008dup	p.Tyr337IlefsTer5	p.Y337Ifs*5	ENST00000305921	NM_003620.3	334	-/A																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	273	579	1	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	149	339	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	175	334	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
INSR	3643	MSKCC	GRCh37	19	7117245	7117245	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	255	520	0	ENST00000302850.5:c.3971T>C	p.Met1324Thr	p.M1324T	ENST00000302850	NM_000208.2	1324	aTg/aCg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610591	10610591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	266	477	0	ENST00000171111.5:c.119C>T	p.Ala40Val	p.A40V	ENST00000171111	NM_203500.1	40	gCg/gTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955118	17955118	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	332	548	0	ENST00000458235.1:c.109C>G	p.Pro37Ala	p.P37A	ENST00000458235	NM_000215.3	37	Ccc/Gcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213945	36213945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	270	579	0	ENST00000222270.7:c.2771G>A	p.Arg924Gln	p.R924Q	ENST00000222270	NM_014727.1	924	cGg/cAg																																																																															
AKT2	208	MSKCC	GRCh37	19	40740960	40740960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	264	572	0	ENST00000392038.2:c.1358del	p.Pro453LeufsTer122	p.P453Lfs*122	ENST00000392038	NM_001626.4	453	cCt/ct																																																																															
AXL	558	MSKCC	GRCh37	19	41743883	41743883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	314	511	0	ENST00000301178.4:c.818C>T	p.Ala273Val	p.A273V	ENST00000301178	NM_021913.4	273	gCg/gTg																																																																															
CD79A	973	MSKCC	GRCh37	19	42383692	42383692	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202097187		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	248	393	0	ENST00000221972.3:c.467C>T	p.Ala156Val	p.A156V	ENST00000221972	NM_021601.3	156	gCg/gTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42794686	42794686	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202152564		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	209	543	0	ENST00000575354.2:c.1766G>A	p.Arg589Gln	p.R589Q	ENST00000575354	NM_015125.3	589	cGg/cAg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918992	50918992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	214	417	1	ENST00000440232.2:c.2729G>A	p.Arg910Gln	p.R910Q	ENST00000440232	NM_002691.3	910	cGg/cAg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965131	25965131	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	211	407	0	ENST00000435504.4:c.4075T>C	p.Ser1359Pro	p.S1359P	ENST00000435504		1359	Tca/Cca																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966872	25966873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	191	460	0	ENST00000435504.4:c.2333dupC	p.Val779SerfsTer25	p.V779Sfs*25	ENST00000435504		778	cca/ccCa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC	rs1361078163		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	110	343	0	ENST00000234420.5:c.3260_3261dup	p.Phe1088ProfsTer3	p.F1088Pfs*3	ENST00000234420	NM_000179.2	1085	acc/aCCcc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033352	48033352	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs63750949		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	117	319	0	ENST00000234420.5:c.3656C>T	p.Thr1219Ile	p.T1219I	ENST00000234420	NM_000179.2	1219	aCt/aTt																																																																															
CASP8	841	MSKCC	GRCh37	2	202137461	202137461	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	125	280	0	ENST00000358485.4:c.689T>C	p.Leu230Pro	p.L230P	ENST00000358485	NM_001080125.1	230	cTg/cCg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021181	31021181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	188	356	0	ENST00000375687.4:c.1180C>T	p.Arg394Cys	p.R394C	ENST00000375687	NM_015338.5	394	Cgt/Tgt																																																																															
CRKL	1399	MSKCC	GRCh37	22	21304065	21304065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	215	333	0	ENST00000354336.3:c.844C>T	p.Arg282Cys	p.R282C	ENST00000354336	NM_005207.3	282	Cgc/Tgc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163376	47163377	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	117	275	0	ENST00000409792.3:c.2749dup	p.Ser917LysfsTer18	p.S917Kfs*18	ENST00000409792	NM_014159.6	917	agt/aAgt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204992	128204992	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	114	532	0	ENST00000341105.2:c.449del	p.Gly150GlufsTer68	p.G150Efs*68	ENST00000341105	NM_032638.4	150	gGa/ga																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138403608	138403608	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	42	402	0	ENST00000289153.2:c.2174T>C	p.Leu725Ser	p.L725S	ENST00000289153	NM_006219.2	725	tTa/tCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517762	187517762	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	71	160	0	ENST00000441802.2:c.12932del	p.Pro4311HisfsTer38	p.P4311Hfs*38	ENST00000441802	NM_005245.3	4311	cCa/ca																																																																															
TERT	7015	MSKCC	GRCh37	5	1254582	1254582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	66	452	0	ENST00000310581.5:c.3196C>T	p.Pro1066Ser	p.P1066S	ENST00000310581	NM_198253.2	1066	Ccc/Tcc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048238	180048238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	251	558	1	ENST00000261937.6:c.2035C>T	p.Arg679Trp	p.R679W	ENST00000261937	NM_182925.4	679	Cgg/Tgg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053143	180053143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	250	541	0	ENST00000261937.6:c.1226G>A	p.Arg409Lys	p.R409K	ENST00000261937	NM_182925.4	409	aGg/aAg																																																																															
IRF4	3662	MSKCC	GRCh37	6	405042	405042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	146	300	0	ENST00000380956.4:c.1124G>A	p.Gly375Asp	p.G375D	ENST00000380956	NM_001195286.1	375	gGc/gAc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32185819	32185819	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145916093		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	257	520	2	ENST00000375023.3:c.1577C>T	p.Ala526Val	p.A526V	ENST00000375023	NM_004557.3	526	gCg/gTg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93964394	93964394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	101	301	0	ENST00000369303.4:c.2503A>G	p.Arg835Gly	p.R835G	ENST00000369303	NM_004440.3	835	Aga/Gga																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94068121	94068121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149408123		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	55	154	1	ENST00000369303.4:c.841C>T	p.Arg281Cys	p.R281C	ENST00000369303	NM_004440.3	281	Cgt/Tgt																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137524803	137524803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	91	286	0	ENST00000367739.4:c.566C>T	p.Thr189Met	p.T189M	ENST00000367739	NM_000416.2	189	aCg/aTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157150533	157150533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	168	300	0	ENST00000346085.5:c.1715G>A	p.Gly572Glu	p.G572E	ENST00000346085	NM_020732.3	572	gGa/gAa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528715	157528715	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	35	353	0	ENST00000346085.5:c.6440G>T	p.Arg2147Met	p.R2147M	ENST00000346085	NM_020732.3	2147	aGg/aTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508860	106508860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	176	318	0	ENST00000359195.3:c.854C>T	p.Thr285Met	p.T285M	ENST00000359195	NM_002649.2	285	aCg/aTg																																																																															
MET	4233	MSKCC	GRCh37	7	116414203	116414203	+	intron_variant	Intron	SNP	T	T	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	159	433	0	ENST00000397752.3:c.3029-732T>A		p.*1010*	ENST00000397752	NM_000245.2	1010																																																																																
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	13	421	0	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128268598	128268598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	277	528	1	ENST00000265960.3:c.1057C>T	p.Arg353Cys	p.R353C	ENST00000265960	NM_001006617.1	353	Cgc/Tgc																																																																															
ABL1	25	MSKCC	GRCh37	9	133759781	133759781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	169	373	0	ENST00000318560.5:c.2104G>A	p.Glu702Lys	p.E702K	ENST00000318560	NM_005157.4	702	Gag/Aag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931673	39931673	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	274	274	0	ENST00000378444.4:c.2926C>T	p.Arg976Ter	p.R976*	ENST00000378444	NM_001123385.1	976	Cga/Tga																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436297	110436297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	160	225	0	ENST00000375856.3:c.2104G>A	p.Val702Met	p.V702M	ENST00000375856	NM_003749.2	702	Gtg/Atg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151902312	151902312	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	13	184	0	ENST00000262189.6:c.3842-2A>T		p.X1281_splice	ENST00000262189	NM_170606.2	1281																																																																																
SLX4	84464	MSKCC	GRCh37	16	3656483	3656483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201117707		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	244	580	1	ENST00000294008.3:c.752C>T	p.Ala251Val	p.A251V	ENST00000294008	NM_032444.2	251	gCg/gTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162660	47162660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	141	312	0	ENST00000409792.3:c.3466C>T	p.Arg1156Cys	p.R1156C	ENST00000409792	NM_014159.6	1156	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0036939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	95	357	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175925	112175925	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	43	176	0	ENST00000257430.4:c.4634C>A	p.Ser1545Ter	p.S1545*	ENST00000257430	NM_000038.5	1545	tCa/tAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099968	27099968	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	105	387	0	ENST00000324856.7:c.3847G>C	p.Gly1283Arg	p.G1283R	ENST00000324856	NM_006015.4	1283	Ggt/Cgt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682571	37682593	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TAAACAGACCGGTCATGAATCTC	TAAACAGACCGGTCATGAATCTC	-			P-0036939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	54	144	0	ENST00000447079.4:c.3760+2_3760+24del		p.X1254_splice	ENST00000447079	NM_015083.1	1254																																																																																
DOT1L	84444	MSKCC	GRCh37	19	2216321	2216321	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	139	549	0	ENST00000398665.3:c.1965G>T	p.Glu655Asp	p.E655D	ENST00000398665	NM_032482.2	655	gaG/gaT																																																																															
APC	324	MSKCC	GRCh37	5	112170810	112170810	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	110	463	0	ENST00000257430.4:c.1906G>C	p.Gly636Arg	p.G636R	ENST00000257430	NM_000038.5	636	Ggt/Cgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0036477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			175	586	637	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610348	10610349	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			217	164	844	0	ENST00000171111.5:c.361dup	p.Glu121GlyfsTer6	p.E121Gfs*6	ENST00000171111	NM_203500.1	121	gag/gGag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861900	57861900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			305	159	593	0	ENST00000228682.2:c.1201G>C	p.Gly401Arg	p.G401R	ENST00000228682	NM_005269.2	401	Ggc/Cgc																																																																															
SETD8	387893	MSKCC	GRCh37	12	123889498	123889498	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			69	34	155	0	ENST00000330479.4:c.725T>C	p.Val242Ala	p.V242A	ENST00000330479	NM_020382.3	242	gTg/gCg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610638	81610638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			233	80	428	0	ENST00000298171.2:c.2236C>A	p.His746Asn	p.H746N	ENST00000298171	NM_000369.2	746	Cat/Aat																																																																															
YES1	7525	MSKCC	GRCh37	18	736958	736958	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			147	126	463	0	ENST00000314574.4:c.1141G>T	p.Ala381Ser	p.A381S	ENST00000314574	NM_005433.3	381	Gct/Tct																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683689	162683689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	141	614	0	ENST00000366898.1:c.280G>A	p.Gly94Ser	p.G94S	ENST00000366898	NM_004562.2	94	Ggc/Agc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739634	41739634	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	119	666	0	ENST00000242208.4:c.339G>C	p.Met113Ile	p.M113I	ENST00000242208	NM_002192.2	113	atG/atC																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045022	47045022	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			93	145	364	0	ENST00000329236.7:c.2114del	p.Leu705ProfsTer19	p.L705Pfs*19	ENST00000329236	NM_001204466.1	705	cTc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0036729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	173	677	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29562746	29562746	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	93	426	0	ENST00000358273.4:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000358273	NM_001042492.2	1276	Cga/Tga																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94203792	94203792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	23	189	0	ENST00000323929.3:c.862C>T	p.Arg288Cys	p.R288C	ENST00000323929	NM_005591.3	288	Cgt/Tgt																																																																															
CDH1	999	MSKCC	GRCh37	16	68845689	68845689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	176	537	0	ENST00000261769.5:c.935C>T	p.Pro312Leu	p.P312L	ENST00000261769	NM_004360.3	312	cCt/cTt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982419	25982419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	106	332	0	ENST00000435504.4:c.871A>G	p.Thr291Ala	p.T291A	ENST00000435504		291	Aca/Gca																																																																															
MST1	4485	MSKCC	GRCh37	3	49723603	49723620	+	inframe_deletion	In_Frame_Del	DEL	GGCAGAAGTTCTCCCGAA	GGCAGAAGTTCTCCCGAA	-			P-0036729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	35	121	0	ENST00000449682.2:c.1022_1039del	p.Leu341_Cys346del	p.L341_C346del	ENST00000449682	NM_020998.3	341	cTTCGGGAGAACTTCTGCCgg/cgg																																																																															
APC	324	MSKCC	GRCh37	5	112173394	112173394	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	24	258	1	ENST00000257430.4:c.2107del	p.Ala703GlnfsTer15	p.A703Qfs*15	ENST00000257430	NM_000038.5	701	atG/at																																																																															
HGF	3082	MSKCC	GRCh37	7	81335062	81335062	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	83	281	0	ENST00000222390.5:c.1765G>T	p.Val589Phe	p.V589F	ENST00000222390	NM_000601.4	589	Gtc/Ttc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034465	47034465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	203	615	2	ENST00000329236.7:c.319G>A	p.Ala107Thr	p.A107T	ENST00000329236	NM_001204466.1	107	Gct/Act																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs879499034		P-0036734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	47	427	1	ENST00000250448.2:c.798C>A	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttA																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618629	37618629	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	26	405	0	ENST00000447079.4:c.305C>A	p.Ser102Ter	p.S102*	ENST00000447079	NM_015083.1	102	tCa/tAa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95572456	95572458	+	missense_variant	Missense_Mutation	ONP	TCT	TCT	AAG			P-0036734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	16	407	0	ENST00000343455.3:c.2907_2909delinsCTT	p.Glu970Leu	p.E970L	ENST00000343455	NM_177438.2	969	gcAGAa/gcCTTa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657673	37657673	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	26	427	0	ENST00000447079.4:c.2590A>G	p.Asn864Asp	p.N864D	ENST00000447079	NM_015083.1	864	Aac/Gac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	130	458	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NF1	4763	MSKCC	GRCh37	17	29528104	29528105	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGATGTGGATCTAATGATTGACTGCCTTGTTT			P-0036810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	65	453	1	ENST00000358273.4:c.1113_1144dup	p.Ser382Ter	p.S382*	ENST00000358273	NM_001042492.2	371	gca/gcAGATGTGGATCTAATGATTGACTGCCTTGTTTa																																																																															
RARA	5914	MSKCC	GRCh37	17	38510569	38510569	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	116	452	0	ENST00000254066.5:c.823A>C	p.Thr275Pro	p.T275P	ENST00000254066	NM_000964.3	275	Acg/Ccg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	190	626	0	ENST00000171111.5:c.959G>C	p.Arg320Pro	p.R320P	ENST00000171111	NM_203500.1	320	cGg/cCg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247453	71247453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	113	522	0	ENST00000318789.4:c.80T>C	p.Leu27Pro	p.L27P	ENST00000318789	NM_032682.5	27	cTa/cCa																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345750	152345750	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	87	249	1	ENST00000359321.1:c.820G>T	p.Glu274Ter	p.E274*	ENST00000359321	NM_005431.1	274	Gaa/Taa																																																																															
AKT1	207	MSKCC	GRCh37	14	105243047	105243048	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCAGGCAGCGGATGATGAAGGTGTTGGGCCGGGGCC			P-0036833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	65	865	0	ENST00000349310.3:c.200_235dup	p.Arg67_Leu78dup	p.R67_L78dup	ENST00000349310	NM_001014432.1	67	cag/cGGCCCCGGCCCAACACCTTCATCATCCGCTGCCTGCag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036857-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			296	81	462	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0036857-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			428	88	561	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0036857-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			213	130	365	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178948044	178948044	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036857-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			300	56	290	0	ENST00000263967.3:c.2816A>G	p.Asp939Gly	p.D939G	ENST00000263967	NM_006218.2	939	gAt/gGt																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919820	96919820	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036857-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			483	49	432	0	ENST00000258439.3:c.443A>G	p.Tyr148Cys	p.Y148C	ENST00000258439	NM_001193304.2	148	tAt/tGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0036890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	73	521	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579433	7579433	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1064793279		P-0036890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	60	626	0	ENST00000269305.4:c.254del	p.Pro85LeufsTer38	p.P85Lfs*38	ENST00000269305	NM_001126112.2	85	cCt/ct																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138198246	138198246	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200840068		P-0036890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	75	369	0	ENST00000237289.4:c.839G>A	p.Arg280Gln	p.R280Q	ENST00000237289	NM_001270507.1	280	cGg/cAg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95574314	95574314	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	43	434	0	ENST00000343455.3:c.2553G>C	p.Gln851His	p.Q851H	ENST00000343455	NM_177438.2	851	caG/caC																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138198240	138198240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	77	361	1	ENST00000237289.4:c.833G>A	p.Arg278Lys	p.R278K	ENST00000237289	NM_001270507.1	278	aGa/aAa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412727	63412727	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	14	584	0	ENST00000330258.3:c.440T>C	p.Val147Ala	p.V147A	ENST00000330258	NM_152424.3	147	gTg/gCg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0036891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	36	218	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0036891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	31	278	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732946	30732946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	21	183	0	ENST00000359013.4:c.1634G>T	p.Cys545Phe	p.C545F	ENST00000359013	NM_001024847.2	545	tGc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	32	402	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0036892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	18	399	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0036892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	66	332	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0036892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	86	320	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554630	63554630	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	110	367	0	ENST00000307078.5:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000307078	NM_004655.3	37	Cag/Tag																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589527	69589527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	15	52	0	ENST00000168712.1:c.326C>T	p.Ala109Val	p.A109V	ENST00000168712	NM_002007.2	109	gCg/gTg																																																																															
ERG	2078	MSKCC	GRCh37	21	39755506	39755506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	22	355	0	ENST00000288319.7:c.1259C>T	p.Ser420Phe	p.S420F	ENST00000288319	NM_182918.3	420	tCc/tTc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3808938	3808938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	138	441	0	ENST00000262367.5:c.3286C>T	p.Pro1096Ser	p.P1096S	ENST00000262367	NM_004380.2	1096	Cca/Tca																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028656	12028656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	85	383	0	ENST00000353533.5:c.859C>T	p.Arg287Cys	p.R287C	ENST00000353533	NM_003010.3	287	Cgc/Tgc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707606	176707606	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	115	408	0	ENST00000439151.2:c.5663A>G	p.Asp1888Gly	p.D1888G	ENST00000439151	NM_022455.4	1888	gAc/gGc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176722132	176722132	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	41	370	0	ENST00000439151.2:c.7763A>T	p.Gln2588Leu	p.Q2588L	ENST00000439151	NM_022455.4	2588	cAa/cTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	19	205	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	37	137	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	171	353	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654642	67654642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	30	319	2	ENST00000264010.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000264010	NM_006565.3	377	Cgt/Tgt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	28	354	0	ENST00000206249.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000206249	NM_000125.3	536	cTc/cCc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78796080	78796080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	132	258	0	ENST00000306801.3:c.970G>A	p.Ala324Thr	p.A324T	ENST00000306801	NM_020761.2	324	Gcg/Acg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874601	35874601	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	27	359	0	ENST00000303115.3:c.757G>C	p.Val253Leu	p.V253L	ENST00000303115	NM_002185.3	253	Gtc/Ctc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771903	135771903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	30	327	0	ENST00000298552.3:c.3214G>T	p.Ala1072Ser	p.A1072S	ENST00000298552	NM_001162426.1	1072	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	108	404	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120181	70120182	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0036936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	68	202	0	ENST00000245479.2:c.1185_1186dup	p.His396ArgfsTer8	p.H396Rfs*8	ENST00000245479	NM_000346.3	395	acg/aCGcg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	33	371	0	ENST00000342988.3:c.1051G>C	p.Asp351His	p.D351H	ENST00000342988	NM_005359.5	351	Gat/Cat																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32184830	32184830	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150609093		P-0036936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	33	316	0	ENST00000375023.3:c.1753C>T	p.Arg585Cys	p.R585C	ENST00000375023	NM_004557.3	585	Cgc/Tgc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114724367	114724368	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	53	307	0	ENST00000543371.1:c.436dup	p.Gln146ProfsTer15	p.Q146Pfs*15	ENST00000543371	NM_001198531.1	145	cac/caCc																																																																															
APC	324	MSKCC	GRCh37	5	112154977	112154977	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0036936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	102	389	0	ENST00000257430.4:c.1248C>G	p.Tyr416Ter	p.Y416*	ENST00000257430	NM_000038.5	416	taC/taG																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528648	157528648	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	35	363	0	ENST00000346085.5:c.6373C>A	p.Pro2125Thr	p.P2125T	ENST00000346085	NM_020732.3	2125	Cca/Aca																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114724370	114724370	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	53	303	0	ENST00000543371.1:c.437A>G	p.Gln146Arg	p.Q146R	ENST00000543371	NM_001198531.1	146	cAg/cGg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948284	71948284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	206	586	0	ENST00000298229.2:c.2996C>T	p.Pro999Leu	p.P999L	ENST00000298229	NM_001567.3	999	cCg/cTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436354	110436354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	82	210	1	ENST00000375856.3:c.2047G>A	p.Val683Met	p.V683M	ENST00000375856	NM_003749.2	683	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	61	690	0	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29207468	29207468	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	14	339	0	ENST00000240100.2:c.328G>C	p.Glu110Gln	p.E110Q	ENST00000240100	NM_001394.6	110	Gag/Cag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11107018	11107018	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	55	432	0	ENST00000344626.4:c.1723C>T	p.Gln575Ter	p.Q575*	ENST00000344626	NM_003072.3	575	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600006	10600006	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	51	644	0	ENST00000171111.5:c.1570G>T	p.Gly524Cys	p.G524C	ENST00000171111	NM_203500.1	524	Ggc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221327	1221327	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	46	496	0	ENST00000326873.7:c.850G>C	p.Asp284His	p.D284H	ENST00000326873	NM_000455.4	284	Gac/Cac																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222152	2222152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	52	792	1	ENST00000398665.3:c.2984G>T	p.Arg995Leu	p.R995L	ENST00000398665	NM_032482.2	995	cGg/cTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17950291	17950291	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	31	516	1	ENST00000458235.1:c.1436C>A	p.Pro479His	p.P479H	ENST00000458235	NM_000215.3	479	cCc/cAc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17952244	17952244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	45	548	1	ENST00000458235.1:c.1096C>T	p.Pro366Ser	p.P366S	ENST00000458235	NM_000215.3	366	Ccg/Tcg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211130	36211130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	87	751	0	ENST00000222270.7:c.881G>T	p.Gly294Val	p.G294V	ENST00000222270	NM_014727.1	294	gGc/gTc																																																																															
CIC	23152	MSKCC	GRCh37	19	42795499	42795499	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	49	573	0	ENST00000575354.2:c.2579C>G	p.Thr860Ser	p.T860S	ENST00000575354	NM_015125.3	860	aCc/aGc																																																																															
HGF	3082	MSKCC	GRCh37	7	81399266	81399266	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	66	560	0	ENST00000222390.5:c.22C>A	p.Pro8Thr	p.P8T	ENST00000222390	NM_000601.4	8	Cca/Aca																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038524	47038524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	28	531	1	ENST00000329236.7:c.455G>T	p.Arg152Leu	p.R152L	ENST00000329236	NM_001204466.1	152	cGc/cTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0036065-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			486	91	542	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0036065-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			783	78	708	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																															
NF2	4771	MSKCC	GRCh37	22	30035169	30035169	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036065-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			508	40	480	0	ENST00000338641.4:c.331C>T	p.Gln111Ter	p.Q111*	ENST00000338641	NM_000268.3	111	Cag/Tag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453149	140453149	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036065-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			295	68	324	0	ENST00000288602.6:c.1786G>C	p.Gly596Arg	p.G596R	ENST00000288602	NM_004333.4	596	Ggt/Cgt																																																																															
PARP1	142	MSKCC	GRCh37	1	226551719	226551719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036065-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			608	51	513	0	ENST00000366794.5:c.2711G>T	p.Ser904Ile	p.S904I	ENST00000366794	NM_001618.3	904	aGt/aTt																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811766	102811766	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036065-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			602	52	583	0	ENST00000307046.8:c.418A>T	p.Thr140Ser	p.T140S	ENST00000307046	NM_001111285.1	140	Acc/Tcc																																																																															
TERT	7015	MSKCC	GRCh37	5	1279438	1279438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036065-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			852	48	782	1	ENST00000310581.5:c.2098C>A	p.Gln700Lys	p.Q700K	ENST00000310581	NM_198253.2	700	Cag/Aag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028894	47028894	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036065-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			434	30	454	0	ENST00000329236.7:c.199del	p.Glu67ArgfsTer18	p.E67Rfs*18	ENST00000329236	NM_001204466.1	66	gcG/gc																																																																															
MET	4233	MSKCC	GRCh37	7	116411876	116411890	+	intron_variant	Intron	DEL	AAGCTCTTTCTTTCT	AAGCTCTTTCTTTCT	-			P-0036249-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			595	2700	975	0	ENST00000397752.3:c.2888-27_2888-13del		p.*963*	ENST00000397752	NM_000245.2	963																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	242	321	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	64	570	0	ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0036612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	78	532	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	117	362	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057520005		P-0036615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	112	485	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																															
SRC	6714	MSKCC	GRCh37	20	36031269	36031269	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	55	439	0	ENST00000358208.4:c.1388G>T	p.Arg463Leu	p.R463L	ENST00000358208		463	cGg/cTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830534	72830534	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	35	610	0	ENST00000268489.5:c.6047A>T	p.Glu2016Val	p.E2016V	ENST00000268489	NM_006885.3	2016	gAg/gTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610389	10610389	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	112	602	0	ENST00000171111.5:c.321del	p.Phe107LeufsTer50	p.F107Lfs*50	ENST00000171111	NM_203500.1	107	ttC/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	76	371	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FH	2271	MSKCC	GRCh37	1	241682980	241682980	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	92	336	0	ENST00000366560.3:c.43G>T	p.Val15Leu	p.V15L	ENST00000366560	NM_000143.3	15	Gtg/Ttg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793489	18793489	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	66	248	0	ENST00000266497.5:c.4185+1G>T		p.X1395_splice	ENST00000266497		1395																																																																																
NTRK1	4914	MSKCC	GRCh37	1	156845410	156845410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	150	739	0	ENST00000524377.1:c.1453G>A	p.Gly485Arg	p.G485R	ENST00000524377	NM_002529.3	485	Ggg/Agg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436425	110436425	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	193	571	0	ENST00000375856.3:c.1976G>T	p.Gly659Val	p.G659V	ENST00000375856	NM_003749.2	659	gGc/gTc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647549	23647549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	102	567	0	ENST00000261584.4:c.318del	p.Phe107LeufsTer70	p.F107Lfs*70	ENST00000261584	NM_024675.3	106	tcC/tc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602443	10602445	+	frameshift_variant	Frame_Shift_Del	DEL	CGC	CGC	GG			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	155	597	1	ENST00000171111.5:c.1133_1135delinsCC	p.Gly378AlafsTer22	p.G378Afs*22	ENST00000171111	NM_203500.1	378	gGCGgc/gCCgc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123760	11123864	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGCCCTTCCTCATCATCGTGCCTCTCTCGTGAGTACCCGCTGCCAGCAACATCCCACACGCCGCTCACACGCTCCTGTGTTTGTTTCCTAAGTTTGCCGCAGTA	GGGCCCTTCCTCATCATCGTGCCTCTCTCGTGAGTACCCGCTGCCAGCAACATCCCACACGCCGCTCACACGCTCCTGTGTTTGTTTCCTAAGTTTGCCGCAGTA	-			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	55	513	0	ENST00000344626.4:c.2411_2438+77del		p.X804_splice	ENST00000344626	NM_003072.3	804																																																																																
BARD1	580	MSKCC	GRCh37	2	215646111	215646111	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	74	511	0	ENST00000260947.4:c.487G>T	p.Val163Leu	p.V163L	ENST00000260947	NM_000465.2	163	Gtg/Ttg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67569241	67569241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	59	432	0	ENST00000274335.5:c.358G>A	p.Glu120Lys	p.E120K	ENST00000274335		120	Gag/Aag																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367336	50367336	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	85	304	0	ENST00000331340.3:c.143A>T	p.Lys48Met	p.K48M	ENST00000331340	NM_006060.4	48	aAg/aTg																																																																															
SMO	6608	MSKCC	GRCh37	7	128843259	128843259	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	129	641	0	ENST00000249373.3:c.366C>G	p.Ile122Met	p.I122M	ENST00000249373	NM_005631.4	122	atC/atG																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054828	5054828	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	56	280	0	ENST00000381652.3:c.880G>T	p.Gly294Cys	p.G294C	ENST00000381652	NM_004972.3	294	Ggt/Tgt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98221976	98221976	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	84	389	0	ENST00000331920.6:c.2793del	p.Val932SerfsTer30	p.V932Sfs*30	ENST00000331920	NM_000264.3	931	ccC/cc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039633	47039644	+	inframe_deletion	In_Frame_Del	DEL	TCCTGCAGGCCC	TCCTGCAGGCCC	-			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	122	586	0	ENST00000329236.7:c.852_863del	p.Ile284_Leu288delinsMet	p.I284_L288delinsM	ENST00000329236	NM_001204466.1	284	aTCCTGCAGGCCCtg/atg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412141	63412141	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	128	845	1	ENST00000330258.3:c.1026C>A	p.Asp342Glu	p.D342E	ENST00000330258	NM_152424.3	342	gaC/gaA																																																																															
ATRX	546	MSKCC	GRCh37	X	76949391	76949391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	57	390	0	ENST00000373344.5:c.406G>A	p.Glu136Lys	p.E136K	ENST00000373344	NM_000489.3	136	Gaa/Aaa																																																																															
XIAP	331	MSKCC	GRCh37	X	123020374	123020374	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	33	328	0	ENST00000355640.3:c.862G>T	p.Gly288Ter	p.G288*	ENST00000355640		288	Gga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0036621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	40	201	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	41	198	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0036621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	36	234	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	58	255	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593466	48593466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	68	285	0	ENST00000342988.3:c.1217C>T	p.Ala406Val	p.A406V	ENST00000342988	NM_005359.5	406	gCg/gTg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448601	89448601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	72	387	0	ENST00000336596.2:c.1565G>A	p.Arg522His	p.R522H	ENST00000336596	NM_005233.5	522	cGc/cAc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67655378	67655378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	82	364	0	ENST00000264010.4:c.1241C>T	p.Ala414Val	p.A414V	ENST00000264010	NM_006565.3	414	gCt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	14	534	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112174742	112174742	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	69	304	0	ENST00000257430.4:c.3451G>T	p.Glu1151Ter	p.E1151*	ENST00000257430	NM_000038.5	1151	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	105	382	1	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578179	7578179	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0036678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	53	567	0	ENST00000269305.4:c.670G>T	p.Glu224Ter	p.E224*	ENST00000269305	NM_001126112.2	224	Gag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	96	320	0	ENST00000281708.4:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000281708	NM_033632.3	545	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	208	644	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65348972	65348972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	130	331	0	ENST00000342505.4:c.193G>T	p.Ala65Ser	p.A65S	ENST00000342505	NM_002227.2	65	Gca/Tca																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243362	46243362	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0036678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	99	266	0	ENST00000334344.6:c.1716-1G>T		p.X572_splice	ENST00000334344	NM_152641.2	572																																																																																
NTRK3	4916	MSKCC	GRCh37	15	88670394	88670394	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	102	394	0	ENST00000360948.2:c.1292G>A	p.Gly431Glu	p.G431E	ENST00000360948	NM_001012338.2	431	gGg/gAg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55140778	55140778	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs139219072		P-0036678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	107	587	0	ENST00000257290.5:c.1639G>T	p.Val547Phe	p.V547F	ENST00000257290	NM_006206.4	547	Gtc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	132	489	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578530	7578533	+	frameshift_variant	Frame_Shift_Del	DEL	ACAT	ACAT	-			P-0036679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	115	803	0	ENST00000269305.4:c.397_400del	p.Met133PhefsTer36	p.M133Ffs*36	ENST00000269305	NM_001126112.2	133	ATGTtt/tt																																																																															
CBL	867	MSKCC	GRCh37	11	119167680	119167680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	57	530	2	ENST00000264033.4:c.2089G>T	p.Asp697Tyr	p.D697Y	ENST00000264033	NM_005188.3	697	Gac/Tac																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670503	134670503	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	39	685	0	ENST00000398015.3:c.414C>G	p.Asp138Glu	p.D138E	ENST00000398015	NM_004441.4	138	gaC/gaG																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143045818	143045818	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	64	540	0	ENST00000262992.4:c.1816C>A	p.Leu606Ile	p.L606I	ENST00000262992	NM_001101669.1	606	Ctc/Atc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081638	143081638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	51	478	0	ENST00000262992.4:c.1436G>T	p.Gly479Val	p.G479V	ENST00000262992	NM_001101669.1	479	gGa/gTa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527943	157527943	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	47	540	0	ENST00000346085.5:c.5668G>C	p.Glu1890Gln	p.E1890Q	ENST00000346085	NM_020732.3	1890	Gaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0036681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	330	712	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0036681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	216	481	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0036681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	49	233	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0036681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	53	393	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541630	187541630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	27	365	0	ENST00000441802.2:c.6110C>T	p.Thr2037Met	p.T2037M	ENST00000441802	NM_005245.3	2037	aCg/aTg																																																																															
IGF2	3481	MSKCC	GRCh37	11	2156674	2156674	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1356855570		P-0036681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	225	562	0	ENST00000434045.2:c.248G>A	p.Arg83His	p.R83H	ENST00000434045	NM_001127598.1	83	cGc/cAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911217	32911217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	66	551	0	ENST00000380152.3:c.2725C>T	p.Leu909Phe	p.L909F	ENST00000380152		909	Ctt/Ttt																																																																															
APC	324	MSKCC	GRCh37	5	112175755	112175759	+	frameshift_variant	Frame_Shift_Del	DEL	ATTAC	ATTAC	GTT			P-0036681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	109	351	1	ENST00000257430.4:c.4464_4468delinsGTT	p.His1490PhefsTer23	p.H1490Ffs*23	ENST00000257430	NM_000038.5	1488	ttATTACat/ttGTTat																																																																															
ATRX	546	MSKCC	GRCh37	X	76854960	76854960	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	371	703	2	ENST00000373344.5:c.5876A>T	p.Asn1959Ile	p.N1959I	ENST00000373344	NM_000489.3	1959	aAt/aTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0036710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	40	346	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028669	12028669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	52	471	0	ENST00000353533.5:c.872G>T	p.Trp291Leu	p.W291L	ENST00000353533	NM_003010.3	291	tGg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	78	352	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	130	598	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244155	153244156	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	45	441	0	ENST00000281708.4:c.2001dup	p.Ser668GlufsTer26	p.S668Efs*26	ENST00000281708	NM_033632.3	667	-/G																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907161	101907161	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	55	267	0	ENST00000374994.4:c.1121G>C	p.Gly374Ala	p.G374A	ENST00000374994	NM_004612.2	374	gGa/gCa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822099	72822099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	34	483	0	ENST00000268489.5:c.10076C>T	p.Ser3359Phe	p.S3359F	ENST00000268489	NM_006885.3	3359	tCc/tTc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435734	56435734	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	58	466	0	ENST00000407977.2:c.1403C>G	p.Ser468Ter	p.S468*	ENST00000407977		468	tCa/tGa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436137	56436137	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	45	450	0	ENST00000407977.2:c.1000G>T	p.Glu334Ter	p.E334*	ENST00000407977		334	Gaa/Taa																																																																															
BARD1	580	MSKCC	GRCh37	2	215633977	215633977	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	41	318	0	ENST00000260947.4:c.1374C>A	p.Asp458Glu	p.D458E	ENST00000260947	NM_000465.2	458	gaC/gaA																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713129	30713129	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	21	243	0	ENST00000359013.4:c.530-1G>A		p.X177_splice	ENST00000359013	NM_001024847.2	177																																																																																
TGFBR2	7048	MSKCC	GRCh37	3	30713408	30713408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	39	410	0	ENST00000359013.4:c.808G>A	p.Glu270Lys	p.E270K	ENST00000359013	NM_001024847.2	270	Gag/Aag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715713	30715713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	44	296	0	ENST00000359013.4:c.1446G>A	p.Met482Ile	p.M482I	ENST00000359013	NM_001024847.2	482	atG/atA																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732961	30732961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	20	284	1	ENST00000359013.4:c.1649C>T	p.Pro550Leu	p.P550L	ENST00000359013	NM_001024847.2	550	cCa/cTa																																																																															
SYK	6850	MSKCC	GRCh37	9	93641147	93641147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	155	506	0	ENST00000375746.1:c.1493G>A	p.Arg498Lys	p.R498K	ENST00000375746	NM_001174167.1	498	aGa/aAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	248	683	0	ENST00000269305.4:c.949delC	p.Gln317SerfsTer28	p.Q317Sfs*28	ENST00000269305	NM_001126112.2	317	Cag/ag																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0036769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	38	223	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
APC	324	MSKCC	GRCh37	5	112174872	112174872	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	89	241	0	ENST00000257430.4:c.3581C>A	p.Ser1194Ter	p.S1194*	ENST00000257430	NM_000038.5	1194	tCa/tAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	125	516	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	43	804	4	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	53	618	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175600	112175600	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	68	454	0	ENST00000257430.4:c.4312delA	p.Thr1438HisfsTer35	p.T1438Hfs*35	ENST00000257430	NM_000038.5	1437	Aaa/aa																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748272	41748272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	179	993	0	ENST00000226382.2:c.497C>T	p.Ala166Val	p.A166V	ENST00000226382	NM_003924.3	166	gCg/gTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	277	955	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	76	788	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	70	560	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	126	550	2	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	154	782	9	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																															
ALK	238	MSKCC	GRCh37	2	29451784	29451784	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772809305		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	124	916	0	ENST00000389048.3:c.2781del	p.Cys928AlafsTer11	p.C928Afs*11	ENST00000389048	NM_004304.4	927	ggG/gg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	164	924	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088788	27088788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	95	710	3	ENST00000324856.7:c.2402del	p.Gly801ValfsTer32	p.G801Vfs*32	ENST00000324856	NM_006015.4	799	caG/ca																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99456467	99456467	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56248469		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	75	529	1	ENST00000268035.6:c.1784G>A	p.Arg595His	p.R595H	ENST00000268035	NM_000875.3	595	cGt/cAt																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19261529	19261529	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	166	904	1	ENST00000162023.5:c.16del	p.Ile6SerfsTer14	p.I6Sfs*14	ENST00000162023		6	Atc/tc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39937104	39937104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	166	490	0	ENST00000378444.4:c.79G>A	p.Glu27Lys	p.E27K	ENST00000378444	NM_001123385.1	27	Gaa/Aaa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871053	12871053	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	70	346	1	ENST00000228872.4:c.285del	p.Gly97ValfsTer22	p.G97Vfs*22	ENST00000228872	NM_004064.3	94	Ccc/cc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245586	41245587	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	165	1193	9	ENST00000357654.3:c.1961dup	p.Tyr655ValfsTer18	p.Y655Vfs*18	ENST00000357654	NM_007294.3	654	aag/aaAg																																																																															
BRAF	673	MSKCC	GRCh37	7	140482926	140482927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs777474487		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	87	885	6	ENST00000288602.6:c.1208dup	p.Ala404CysfsTer9	p.A404Cfs*9	ENST00000288602	NM_004333.4	403	cct/ccCt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259729	16259729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	69	628	0	ENST00000375759.3:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000375759	NM_015001.2	2332	Cgc/Tgc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117861247	117861247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	101	670	0	ENST00000297338.2:c.1642G>A	p.Asp548Asn	p.D548N	ENST00000297338	NM_006265.2	548	Gat/Aat																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966873	25966873	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	147	891	5	ENST00000435504.4:c.2333del	p.Pro778GlnfsTer21	p.P778Qfs*21	ENST00000435504		778	cCa/ca																																																																															
CUL3	8452	MSKCC	GRCh37	2	225368387	225368388	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	73	722	0	ENST00000264414.4:c.1358dupA	p.Asn453LysfsTer5	p.N453Kfs*5	ENST00000264414	NM_003590.4	453	aac/aaAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	168	1060	4	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	119	922	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112347	115112347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	37	508	1	ENST00000257566.3:c.1393G>A	p.Ala465Thr	p.A465T	ENST00000257566	NM_016569.3	465	Gcc/Acc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434959	49434959	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	116	676	1	ENST00000301067.7:c.6594del	p.Tyr2199IlefsTer65	p.Y2199Ifs*65	ENST00000301067	NM_003482.3	2198	ccC/cc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291084	10291084	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	162	995	4	ENST00000340748.4:c.387del	p.Lys130AsnfsTer129	p.K130Nfs*129	ENST00000340748		129	ccC/cc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1287	177	1195	4	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661663	227661664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	45	782	0	ENST00000305123.5:c.1790_1791dup	p.His598GlyfsTer39	p.H598Gfs*39	ENST00000305123	NM_005544.2	597	-/GG																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849914	156849914	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763122825		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	183	958	2	ENST00000524377.1:c.2170G>A	p.Gly724Ser	p.G724S	ENST00000524377	NM_002529.3	724	Ggc/Agc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527886	157527886	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	112	644	1	ENST00000346085.5:c.5614del	p.Ser1872AlafsTer3	p.S1872Afs*3	ENST00000346085	NM_020732.3	1871	Aaa/aa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731149	162731149	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147483979		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	126	709	1	ENST00000367921.3:c.1004C>T	p.Thr335Met	p.T335M	ENST00000367921	NM_006182.2	335	aCg/aTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41562637	41562637	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	161	637	0	ENST00000263253.7:c.3841C>T	p.Arg1281Ter	p.R1281*	ENST00000263253	NM_001429.3	1281	Cga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100727	8100727	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	108	832	0	ENST00000346208.3:c.701T>C	p.Phe234Ser	p.F234S	ENST00000346208		234	tTc/tCc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117423	115117423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	181	571	1	ENST00000257566.3:c.751C>T	p.Arg251Trp	p.R251W	ENST00000257566	NM_016569.3	251	Cgg/Tgg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741825	17741825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	104	385	0	ENST00000250003.3:c.496G>A	p.Asp166Asn	p.D166N	ENST00000250003	NM_002478.4	166	Gac/Aac																																																																															
WT1	7490	MSKCC	GRCh37	11	32456619	32456621	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	82	380	0	ENST00000332351.3:c.271_273del	p.Gly91del	p.G91del	ENST00000332351	NM_024426.4	91	GGC/-																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976896	18976896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	57	805	1	ENST00000262803.5:c.3281C>T	p.Ala1094Val	p.A1094V	ENST00000262803	NM_002911.3	1094	gCg/gTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42797191	42797191	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587778202		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	215	1135	2	ENST00000575354.2:c.3553G>A	p.Ala1185Thr	p.A1185T	ENST00000575354	NM_015125.3	1185	Gcc/Acc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639102	3639102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	183	1056	0	ENST00000294008.3:c.4537G>A	p.Val1513Ile	p.V1513I	ENST00000294008	NM_032444.2	1513	Gtt/Att																																																																															
CDC42	998	MSKCC	GRCh37	1	22412941	22412941	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	22	256	0	ENST00000344548.3:c.188A>T	p.Asp63Val	p.D63V	ENST00000344548	NM_001039802.1	63	gAt/gTt																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551550	150551550	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	202	1002	0	ENST00000369026.2:c.457A>G	p.Asn153Asp	p.N153D	ENST00000369026	NM_021960.4	153	Aac/Gac																																																																															
RIT1	6016	MSKCC	GRCh37	1	155870410	155870410	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	78	523	1	ENST00000368323.3:c.430-1G>T		p.X144_splice	ENST00000368323	NM_006912.5	144																																																																																
IKBKE	9641	MSKCC	GRCh37	1	206666684	206666684	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	147	907	0	ENST00000367120.3:c.2018G>T	p.Ser673Ile	p.S673I	ENST00000367120	NM_014002.3	673	aGc/aTc																																																																															
TET1	80312	MSKCC	GRCh37	10	70446283	70446284	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	102	688	0	ENST00000373644.4:c.5229_5230dup	p.Arg1744LysfsTer19	p.R1744Kfs*19	ENST00000373644	NM_030625.2	1741	-/AA																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137238	64137238	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	199	1052	0	ENST00000334205.4:c.1670T>C	p.Leu557Ser	p.L557S	ENST00000334205	NM_003942.2	557	tTg/tCg																																																																															
ATM	472	MSKCC	GRCh37	11	108129797	108129797	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	83	627	0	ENST00000278616.4:c.2461A>G	p.Ser821Gly	p.S821G	ENST00000278616	NM_000051.3	821	Agt/Ggt																																																																															
ATM	472	MSKCC	GRCh37	11	108199814	108199814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	38	381	0	ENST00000278616.4:c.7156G>A	p.Ala2386Thr	p.A2386T	ENST00000278616	NM_000051.3	2386	Gca/Aca																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118392702	118392702	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	108	834	0	ENST00000534358.1:c.11734T>G	p.Cys3912Gly	p.C3912G	ENST00000534358	NM_005933.3	3912	Tgt/Ggt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46125076	46125076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	42	366	0	ENST00000334344.6:c.263C>T	p.Ala88Val	p.A88V	ENST00000334344	NM_152641.2	88	gCt/gTt																																																																															
SETD8	387893	MSKCC	GRCh37	12	123892084	123892084	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	133	392	0	ENST00000330479.4:c.893A>T	p.Asn298Ile	p.N298I	ENST00000330479	NM_020382.3	298	aAt/aTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858133	9858133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	157	1065	1	ENST00000330684.3:c.3268G>A	p.Val1090Met	p.V1090M	ENST00000330684	NM_001134407.1	1090	Gtg/Atg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348059	89348059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1229	209	1516	3	ENST00000301030.4:c.4891C>T	p.Arg1631Trp	p.R1631W	ENST00000301030	NM_001256183.1	1631	Cgg/Tgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29550542	29550542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	40	555	0	ENST00000358273.4:c.1802G>A	p.Arg601Gln	p.R601Q	ENST00000358273	NM_001042492.2	601	cGg/cAg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40860057	40860057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	159	924	0	ENST00000428826.2:c.1579C>T	p.Pro527Ser	p.P527S	ENST00000428826		527	Cca/Tca																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119011	70119011	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	150	874	1	ENST00000245479.2:c.583C>T	p.Gln195Ter	p.Q195*	ENST00000245479	NM_000346.3	195	Cag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11169536	11169536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	143	800	3	ENST00000344626.4:c.4606G>A	p.Ala1536Thr	p.A1536T	ENST00000344626	NM_003072.3	1536	Gca/Aca																																																																															
JAK3	3718	MSKCC	GRCh37	19	17948759	17948759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	173	1179	0	ENST00000458235.1:c.1683G>T	p.Lys561Asn	p.K561N	ENST00000458235	NM_000215.3	561	aaG/aaT																																																																															
ERF	2077	MSKCC	GRCh37	19	42753887	42753887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	109	1046	0	ENST00000222329.4:c.377G>A	p.Gly126Asp	p.G126D	ENST00000222329	NM_006494.2	126	gGt/gAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42791254	42791254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	102	876	1	ENST00000575354.2:c.314G>T	p.Ser105Ile	p.S105I	ENST00000575354	NM_015125.3	105	aGc/aTc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912160	50912160	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	156	929	2	ENST00000440232.2:c.1892+2T>C		p.X631_splice	ENST00000440232	NM_002691.3	631																																																																																
ASXL2	55252	MSKCC	GRCh37	2	25966879	25966879	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	162	892	0	ENST00000435504.4:c.2327C>A	p.Thr776Asn	p.T776N	ENST00000435504		776	aCc/aAc																																																																															
ALK	238	MSKCC	GRCh37	2	29416399	29416400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	169	1151	0	ENST00000389048.3:c.4553dup	p.Asn1519GlufsTer2	p.N1519Efs*2	ENST00000389048	NM_004304.4	1518	aag/aaAg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266464	198266464	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	62	524	0	ENST00000335508.6:c.2370+2T>C		p.X790_splice	ENST00000335508	NM_012433.2	790																																																																																
CASP8	841	MSKCC	GRCh37	2	202137452	202137452	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	84	603	1	ENST00000358485.4:c.680A>T	p.Asn227Ile	p.N227I	ENST00000358485	NM_001080125.1	227	aAc/aTc																																																																															
BARD1	580	MSKCC	GRCh37	2	215609814	215609814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	77	542	0	ENST00000260947.4:c.1880G>A	p.Gly627Glu	p.G627E	ENST00000260947	NM_000465.2	627	gGa/gAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714369	40714369	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	107	643	1	ENST00000373198.4:c.4028G>A	p.Arg1343Gln	p.R1343Q	ENST00000373198	NM_133170.3	1343	cGg/cAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41400095	41400095	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	97	692	1	ENST00000373198.4:c.664C>A	p.His222Asn	p.H222N	ENST00000373198	NM_133170.3	222	Cat/Aat																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46267848	46267849	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	137	880	0	ENST00000371998.3:c.2615dup	p.Asn872LysfsTer23	p.N872Kfs*23	ENST00000371998		870	gta/gtAa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52661365	52661365	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs145261114		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	107	542	0	ENST00000394830.3:c.1465A>G	p.Arg489Gly	p.R489G	ENST00000394830	NM_018313.4	489	Agg/Ggg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430506	181430506	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	166	914	0	ENST00000325404.1:c.358A>G	p.Met120Val	p.M120V	ENST00000325404	NM_003106.3	120	Atg/Gtg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186503835	186503835	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	97	709	0	ENST00000323963.5:c.512A>G	p.Tyr171Cys	p.Y171C	ENST00000323963		171	tAc/tGc																																																																															
BCL6	604	MSKCC	GRCh37	3	187447652	187447652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	117	760	1	ENST00000232014.4:c.541G>A	p.Ala181Thr	p.A181T	ENST00000232014	NM_001130845.1	181	Gcc/Acc																																																																															
TP63	8626	MSKCC	GRCh37	3	189607174	189607174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	147	1038	0	ENST00000264731.3:c.1553G>A	p.Gly518Glu	p.G518E	ENST00000264731	NM_003722.4	518	gGa/gAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549491	187549491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	86	648	0	ENST00000441802.2:c.4627C>T	p.Arg1543Cys	p.R1543C	ENST00000441802	NM_005245.3	1543	Cgc/Tgc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149498364	149498364	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	144	963	2	ENST00000261799.4:c.2850del	p.Phe951SerfsTer28	p.F951Sfs*28	ENST00000261799	NM_002609.3	950	ccC/cc																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158400	26158400	+	start_lost	Translation_Start_Site	SNP	G	G	A	rs140899305		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	154	1055	2	ENST00000289316.2:c.3G>A	p.Met1?	p.M1?	ENST00000289316	NM_138720.2	1	atG/atA																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815835	32815835	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs192572056		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	144	797	4	ENST00000354258.4:c.1781C>T	p.Thr594Met	p.T594M	ENST00000354258	NM_000593.5	594	aCg/aTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528267	157528267	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	164	876	0	ENST00000346085.5:c.5992G>T	p.Glu1998Ter	p.E1998*	ENST00000346085	NM_020732.3	1998	Gag/Tag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2969704	2969705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	149	916	0	ENST00000396946.4:c.1574dup	p.His527AlafsTer11	p.H527Afs*11	ENST00000396946	NM_032415.4	525	aag/aaAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845997	151845997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	242	843	0	ENST00000262189.6:c.13015C>T	p.His4339Tyr	p.H4339Y	ENST00000262189	NM_170606.2	4339	Cat/Tat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859731	151859731	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	204	592	5	ENST00000262189.6:c.10931C>A	p.Pro3644His	p.P3644H	ENST00000262189	NM_170606.2	3644	cCt/cAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931783	68931783	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	145	641	0	ENST00000288368.4:c.214-1G>T		p.X72_splice	ENST00000288368	NM_024870.2	72																																																																																
PREX2	80243	MSKCC	GRCh37	8	68989665	68989665	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	260	868	0	ENST00000288368.4:c.1603T>C	p.Phe535Leu	p.F535L	ENST00000288368	NM_024870.2	535	Ttt/Ctt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981407	70981407	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	306	1026	1	ENST00000276594.2:c.689delC	p.Pro230GlnfsTer64	p.P230Qfs*64	ENST00000276594	NM_024504.3	230	cCa/ca																																																																															
FANCC	2176	MSKCC	GRCh37	9	97863996	97863996	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	110	729	1	ENST00000289081.3:c.1670A>G	p.Gln557Arg	p.Q557R	ENST00000289081	NM_000136.2	557	cAa/cGa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969436	44969436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	101	384	0	ENST00000377967.4:c.4118T>C	p.Val1373Ala	p.V1373A	ENST00000377967	NM_021140.2	1373	gTg/gCg																																																																															
AR	367	MSKCC	GRCh37	X	66765299	66765299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	135	433	0	ENST00000374690.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000374690	NM_000044.3	104	cCc/cTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534374	187534374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	102	877	0	ENST00000441802.2:c.9352G>A	p.Val3118Met	p.V3118M	ENST00000441802	NM_005245.3	3118	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587782082		P-0036854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	271	678	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256435	16256435	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199763346		P-0036854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	111	550	0	ENST00000375759.3:c.3700G>A	p.Asp1234Asn	p.D1234N	ENST00000375759	NM_015001.2	1234	Gat/Aat																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78414884	78414884	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	84	401	0	ENST00000370768.2:c.1882C>T	p.Gln628Ter	p.Q628*	ENST00000370768	NM_003902.3	628	Cag/Tag																																																																															
EP300	2033	MSKCC	GRCh37	22	41566457	41566457	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	161	454	0	ENST00000263253.7:c.4334A>C	p.Asp1445Ala	p.D1445A	ENST00000263253	NM_001429.3	1445	gAt/gCt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	103	393	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																															
RHOA	387	MSKCC	GRCh37	3	49412969	49412969	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	144	753	0	ENST00000418115.1:c.54G>C	p.Lys18Asn	p.K18N	ENST00000418115	NM_001664.2	18	aaG/aaC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445170	49445170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	36	795	0	ENST00000301067.7:c.2296G>A	p.Glu766Lys	p.E766K	ENST00000301067	NM_003482.3	766	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445521	49445521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	30	833	0	ENST00000301067.7:c.1945G>A	p.Glu649Lys	p.E649K	ENST00000301067	NM_003482.3	649	Gag/Aag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271978	15271978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	101	699	1	ENST00000263388.2:c.6461G>T	p.Gly2154Val	p.G2154V	ENST00000263388	NM_000435.2	2154	gGa/gTa																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933647	49933647	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	88	908	0	ENST00000296474.3:c.2630A>G	p.Glu877Gly	p.E877G	ENST00000296474	NM_002447.2	877	gAg/gGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916938	+	inframe_deletion	In_Frame_Del	DEL	GTG	GTG	-			P-0036863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	81	479	0	ENST00000263967.3:c.323_325del	p.Arg108_Glu109delinsGln	p.R108_E109delinsQ	ENST00000263967	NM_006218.2	108	cGTGaa/caa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151864390	151864390	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0036863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	149	595	1	ENST00000262189.6:c.9591T>A	p.Tyr3197Ter	p.Y3197*	ENST00000262189	NM_170606.2	3197	taT/taA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0036902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	42	479	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0036902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	191	861	1	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573738	64573738	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	31	632	2	ENST00000337652.1:c.1030C>T	p.Gln344Ter	p.Q344*	ENST00000337652	NM_130803.2	344	Cag/Tag																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289016	33289016	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	271	685	0	ENST00000374542.5:c.536del	p.Pro179GlnfsTer50	p.P179Qfs*50	ENST00000374542	NM_001141970.1	179	cCa/ca																																																																															
MEN1	4221	MSKCC	GRCh37	11	64574514	64574534	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGGGGTGGGCTCCAGCTCC	CCAGGGGTGGGCTCCAGCTCC	A			P-0036906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	169	695	0	ENST00000337652.1:c.876_896delinsT	p.Glu292AspfsTer23	p.E292Dfs*23	ENST00000337652	NM_130803.2	292	gaGGAGCTGGAGCCCACCCCTGGc/gaTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0036916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	8	219	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0036916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	70	317	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0036916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	86	222	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782596		P-0036916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	73	301	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435907	49435907	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	35	333	0	ENST00000301067.7:c.6074A>G	p.Asn2025Ser	p.N2025S	ENST00000301067	NM_003482.3	2025	aAc/aGc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247224	153247224	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	43	253	0	ENST00000281708.4:c.1578G>T	p.Trp526Cys	p.W526C	ENST00000281708	NM_033632.3	526	tgG/tgT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117718145	117718145	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	24	349	0	ENST00000368508.3:c.712A>C	p.Lys238Gln	p.K238Q	ENST00000368508	NM_002944.2	238	Aaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	27	469	2	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242483	55242506	+	inframe_deletion	In_Frame_Del	DEL	ATCTCCGAAAGCCAACAAGGAAAT	ATCTCCGAAAGCCAACAAGGAAAT	-			P-0036917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	12	372	0	ENST00000275493.2:c.2253_2276del	p.Ser752_Ile759del	p.S752_I759del	ENST00000275493	NM_005228.3	751	acATCTCCGAAAGCCAACAAGGAAATc/acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057911	27057911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	21	461	2	ENST00000324856.7:c.1619C>T	p.Thr540Met	p.T540M	ENST00000324856	NM_006015.4	540	aCg/aTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0036921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	11	372	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0036921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	78	505	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0036921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	84	344	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0036921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	85	485	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0036921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	67	354	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535309	66535309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	54	382	0	ENST00000273854.3:c.152G>A	p.Arg51Gln	p.R51Q	ENST00000273854	NM_004439.5	51	cGg/cAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040640	47040640	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	82	490	0	ENST00000329236.7:c.1041G>A	p.Trp347Ter	p.W347*	ENST00000329236	NM_001204466.1	347	tgG/tgA																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479838	67479838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	71	457	2	ENST00000327367.4:c.1145C>T	p.Ala382Val	p.A382V	ENST00000327367	NM_005902.3	382	gCg/gTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273029	55273029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	82	540	1	ENST00000275493.2:c.3352G>A	p.Ala1118Thr	p.A1118T	ENST00000275493	NM_005228.3	1118	Gcg/Acg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717690	89717691	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTACTT			P-0036921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	51	447	0	ENST00000371953.3:c.718_724dup	p.Glu242ValfsTer3	p.E242Vfs*3	ENST00000371953	NM_000314.4	239	atg/aTGTACTTtg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118390719	118390719	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	87	410	0	ENST00000534358.1:c.11369A>C	p.Gln3790Pro	p.Q3790P	ENST00000534358	NM_005933.3	3790	cAg/cCg																																																																															
NF1	4763	MSKCC	GRCh37	17	29663896	29663896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	92	483	0	ENST00000358273.4:c.6391C>T	p.His2131Tyr	p.H2131Y	ENST00000358273	NM_001042492.2	2131	Cac/Tac																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0034045-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			370	59	441	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034045-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			483	77	458	0	ENST00000347630.2:c.397T>C	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	Ttc/Ctc																																																																															
APC	324	MSKCC	GRCh37	5	112175977	112175977	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034045-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			156	27	201	0	ENST00000257430.4:c.4687del	p.Leu1563TyrfsTer2	p.L1563Yfs*2	ENST00000257430	NM_000038.5	1562	gaC/ga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0034772-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			352	13	285	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0035991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	89	759	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245279	41245279	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	109	890	0	ENST00000357654.3:c.2269del	p.Val757PhefsTer8	p.V757Ffs*8	ENST00000357654	NM_007294.3	757	Gtt/tt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28588631	28588631	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	57	463	0	ENST00000241453.7:c.2817G>C	p.Leu939Phe	p.L939F	ENST00000241453	NM_004119.2	939	ttG/ttC																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59858266	59858266	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	60	724	0	ENST00000259008.2:c.1729A>C	p.Lys577Gln	p.K577Q	ENST00000259008	NM_032043.2	577	Aag/Cag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965959	25965959	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	99	744	0	ENST00000435504.4:c.3247G>T	p.Val1083Leu	p.V1083L	ENST00000435504		1083	Gtg/Ttg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928946	49928946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	87	875	0	ENST00000296474.3:c.3420C>A	p.His1140Gln	p.H1140Q	ENST00000296474	NM_002447.2	1140	caC/caA																																																																															
APC	324	MSKCC	GRCh37	5	112177566	112177566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	27	388	0	ENST00000257430.4:c.6275T>C	p.Leu2092Pro	p.L2092P	ENST00000257430	NM_000038.5	2092	cTa/cCa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151866334	151866334	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0035991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	20	343	0	ENST00000262189.6:c.9454G>C	p.Asp3152His	p.D3152H	ENST00000262189	NM_170606.2	3152	Gat/Cat																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508169	106508169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	18	177	0	ENST00000359195.3:c.163G>A	p.Glu55Lys	p.E55K	ENST00000359195	NM_002649.2	55	Gaa/Aaa																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45649954	45649954	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs186459476		P-0036507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	27	407	2	ENST00000407780.3:c.881C>T	p.Pro294Leu	p.P294L	ENST00000407780	NM_001283052.1	294	cCg/cTg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266510	198266510	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	39	322	0	ENST00000335508.6:c.2326G>C	p.Glu776Gln	p.E776Q	ENST00000335508	NM_012433.2	776	Gaa/Caa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117601	70117602	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	38	557	0	ENST00000245479.2:c.69_70insT	p.Pro24SerfsTer228	p.P24Sfs*228	ENST00000245479	NM_000346.3	23	-/T																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201777	66201777	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	49	435	0	ENST00000273854.3:c.2725C>T	p.Gln909Ter	p.Q909*	ENST00000273854	NM_004439.5	909	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540238	187540238	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	47	414	0	ENST00000441802.2:c.7502T>G	p.Leu2501Arg	p.L2501R	ENST00000441802	NM_005245.3	2501	cTa/cGa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287234	46287234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	26	345	0	ENST00000334344.6:c.5179C>A	p.Pro1727Thr	p.P1727T	ENST00000334344	NM_152641.2	1727	Cct/Act																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061212	38061232	+	inframe_deletion	In_Frame_Del	DEL	GTAGCAGCCGTTCTCGAACAT	GTAGCAGCCGTTCTCGAACAT	-			P-0036511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	29	447	0	ENST00000250448.2:c.757_777delATGTTCGAGAACGGCTGCTAC	p.Met253_Tyr259del	p.M253_Y259del	ENST00000250448	NM_004496.3	253	ATGTTCGAGAACGGCTGCTAC/-																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871865	12871865	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	23	124	0	ENST00000228872.4:c.583del	p.Arg195AspfsTer30	p.R195Dfs*30	ENST00000228872	NM_004064.3	194	agA/ag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25978967	25978967	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0036511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	22	335	0	ENST00000435504.4:c.956T>A	p.Leu319Ter	p.L319*	ENST00000435504		319	tTa/tAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922294	178922294	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	18	276	0	ENST00000263967.3:c.1063T>C	p.Tyr355His	p.Y355H	ENST00000263967	NM_006218.2	355	Tat/Cat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0036513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	11	352	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0036513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	66	500	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313149	30313149	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0036513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	38	543	0	ENST00000262643.3:c.843del	p.Leu282TrpfsTer31	p.L282Wfs*31	ENST00000262643	NM_001238.2	281	ctG/ct																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	186	408	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372098	55372098	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62642516		P-0036514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	102	390	0	ENST00000297316.4:c.788C>T	p.Pro263Leu	p.P263L	ENST00000297316	NM_022454.3	263	cCg/cTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157256708	157256708	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	84	148	0	ENST00000346085.5:c.2035C>T	p.Pro679Ser	p.P679S	ENST00000346085	NM_020732.3	679	Cca/Tca																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177395	56177399	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	ONP	AGGTA	AGGTA	CGGTG			P-0036514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	93	266	0	ENST00000399503.3:c.2370-2_2372delinsCGGTG		p.X790_splice	ENST00000399503	NM_005921.1	790																																																																																
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0036555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	119	452	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2194565	2194565	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	30	305	0	ENST00000398665.3:c.640G>T	p.Ala214Ser	p.A214S	ENST00000398665	NM_032482.2	214	Gca/Tca																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197139	26197139	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	98	379	0	ENST00000356476.2:c.340C>G	p.His114Asp	p.H114D	ENST00000356476		114	Cac/Gac																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023150	31023150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	112	499	0	ENST00000375687.4:c.2635G>A	p.Asp879Asn	p.D879N	ENST00000375687	NM_015338.5	879	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	133	466	0	ENST00000269305.4:c.747G>C	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agC																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252884	36252885	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	60	290	0	ENST00000300305.3:c.477dup	p.Asp160Ter	p.D160*	ENST00000300305		159	-/T																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881414	37881414	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1131692237		P-0036561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	530	574	0	ENST00000269571.5:c.2606T>G	p.Leu869Arg	p.L869R	ENST00000269571		869	cTg/cGg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350006	89350006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	56	598	0	ENST00000301030.4:c.2944G>A	p.Glu982Lys	p.E982K	ENST00000301030	NM_001256183.1	982	Gag/Aag																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518532	204518532	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	62	218	0	ENST00000367182.3:c.1195C>G	p.His399Asp	p.H399D	ENST00000367182	NM_001278516.1	399	Cac/Gac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112474	115112478	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCC	GGGCC	-			P-0036561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	145	544	0	ENST00000257566.3:c.1262_1266del	p.Arg421ProfsTer16	p.R421Pfs*16	ENST00000257566	NM_016569.3	421	cGGCCC/c																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022484	31022484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	45	241	0	ENST00000375687.4:c.1969G>A	p.Glu657Lys	p.E657K	ENST00000375687	NM_015338.5	657	Gag/Aag																																																																															
FANCC	2176	MSKCC	GRCh37	9	97912283	97912283	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	77	338	0	ENST00000289081.3:c.608T>A	p.Leu203His	p.L203H	ENST00000289081	NM_000136.2	203	cTc/cAc																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128321983	128321988	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGCC	GAAGCC	A			P-0036561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	81	486	0	ENST00000265960.3:c.772_777delinsT	p.Gly258Ter	p.G258*	ENST00000265960	NM_001006617.1	258	GGCTTC/T																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61197647	61197647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	62	444	0	ENST00000301761.2:c.29C>T	p.Ser10Leu	p.S10L	ENST00000301761	NM_017841.2	10	tCg/tTg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0036632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	46	585	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0036742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	124	380	1	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976745	2976745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	98	639	0	ENST00000396946.4:c.1267C>T	p.Arg423Trp	p.R423W	ENST00000396946	NM_032415.4	423	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175771	112175771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	38	286	0	ENST00000257430.4:c.4480G>A	p.Glu1494Lys	p.E1494K	ENST00000257430	NM_000038.5	1494	Gaa/Aaa																																																																															
ATM	472	MSKCC	GRCh37	11	108153542	108153542	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	143	341	0	ENST00000278616.4:c.3682G>T	p.Glu1228Ter	p.E1228*	ENST00000278616	NM_000051.3	1228	Gaa/Taa																																																																															
TOP1	7150	MSKCC	GRCh37	20	39745032	39745032	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0036742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	76	381	0	ENST00000361337.2:c.1822C>G	p.Pro608Ala	p.P608A	ENST00000361337	NM_003286.2	608	Ccg/Gcg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169999732	169999732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	75	343	0	ENST00000295797.4:c.1043G>A	p.Arg348Lys	p.R348K	ENST00000295797	NM_002740.5	348	aGa/aAa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228235	53228235	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	206	563	0	ENST00000375401.3:c.2167G>T	p.Asp723Tyr	p.D723Y	ENST00000375401	NM_004187.3	723	Gac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112175769	112175770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	38	285	0	ENST00000257430.4:c.4478_4479insA	p.Glu1494GlyfsTer20	p.E1494Gfs*20	ENST00000257430	NM_000038.5	1493	acg/acAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	19	368	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220400	1220400	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	42	638	1	ENST00000326873.7:c.493G>T	p.Glu165Ter	p.E165*	ENST00000326873	NM_000455.4	165	Gag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044472	47044472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	39	266	0	ENST00000329236.7:c.1735C>T	p.Arg579Cys	p.R579C	ENST00000329236	NM_001204466.1	579	Cgc/Tgc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65301158	65301158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	42	193	0	ENST00000342505.4:c.3290G>T	p.Gly1097Val	p.G1097V	ENST00000342505	NM_002227.2	1097	gGc/gTc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65313328	65313328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	93	416	0	ENST00000342505.4:c.1786C>T	p.His596Tyr	p.H596Y	ENST00000342505	NM_002227.2	596	Cac/Tac																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098759	47098759	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	67	564	0	ENST00000409792.3:c.6515C>G	p.Pro2172Arg	p.P2172R	ENST00000409792	NM_014159.6	2172	cCc/cGc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0036753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	81	283	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578224	7578224	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0036753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	133	599	0	ENST00000269305.4:c.625A>T	p.Arg209Ter	p.R209*	ENST00000269305	NM_001126112.2	209	Aga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105682	27105682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	80	310	0	ENST00000324856.7:c.5293G>A	p.Glu1765Lys	p.E1765K	ENST00000324856	NM_006015.4	1765	Gaa/Aaa																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206650052	206650052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	34	506	1	ENST00000367120.3:c.572G>A	p.Arg191Gln	p.R191Q	ENST00000367120	NM_014002.3	191	cGa/cAa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457707	67457707	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	130	434	1	ENST00000327367.4:c.517C>T	p.Gln173Ter	p.Q173*	ENST00000327367	NM_005902.3	173	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0036754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	62	384	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132542	11132542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	68	607	2	ENST00000344626.4:c.2758G>A	p.Glu920Lys	p.E920K	ENST00000344626	NM_003072.3	920	Gag/Aag																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514631	103514631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	41	272	0	ENST00000355739.4:c.1132G>T	p.Val378Leu	p.V378L	ENST00000355739	NM_000123.3	378	Gta/Tta																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560409	95560409	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	55	465	0	ENST00000343455.3:c.5180A>G	p.His1727Arg	p.H1727R	ENST00000343455	NM_177438.2	1727	cAc/cGc																																																																															
STK11	6794	MSKCC	GRCh37	19	1222992	1222993	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0036754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	76	451	0	ENST00000326873.7:c.929_930del	p.Arg310GlnfsTer7	p.R310Qfs*7	ENST00000326873	NM_000455.4	310	cGG/c																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602292	10602292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	74	621	0	ENST00000171111.5:c.1286G>A	p.Gly429Asp	p.G429D	ENST00000171111	NM_203500.1	429	gGc/gAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412508	63412508	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202069335		P-0036754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	92	308	0	ENST00000330258.3:c.659C>T	p.Thr220Ile	p.T220I	ENST00000330258	NM_152424.3	220	aCc/aTc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28897068	28897068	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs35549791		P-0036789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	58	416	0	ENST00000282397.4:c.2812A>G	p.Met938Val	p.M938V	ENST00000282397	NM_002019.4	938	Atg/Gtg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775676	9775676	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	269	714	0	ENST00000377346.4:c.219C>G	p.Ile73Met	p.I73M	ENST00000377346	NM_005026.3	73	atC/atG																																																																															
ATRX	546	MSKCC	GRCh37	X	76909631	76909632	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	72	591	0	ENST00000373344.5:c.4273dup	p.Arg1425LysfsTer5	p.R1425Kfs*5	ENST00000373344	NM_000489.3	1425	agg/aAgg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231295	46231295	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	361	501	0	ENST00000334344.6:c.1135G>T	p.Gly379Ter	p.G379*	ENST00000334344	NM_152641.2	379	Gga/Tga																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609889	81609889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	248	401	1	ENST00000298171.2:c.1487C>T	p.Thr496Met	p.T496M	ENST00000298171	NM_000369.2	496	aCg/aTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121829	2121829	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	111	670	0	ENST00000219476.3:c.1991C>G	p.Ser664Cys	p.S664C	ENST00000219476	NM_000548.3	664	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577604	7577610	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	CCAACCT	CCAACCT	-			P-0036789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	377	500	0	ENST00000269305.4:c.673-2_677del		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
SRC	6714	MSKCC	GRCh37	20	36022395	36022395	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	83	608	1	ENST00000358208.4:c.448G>A	p.Glu150Lys	p.E150K	ENST00000358208		150	Gag/Aag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89176380	89176380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	58	375	0	ENST00000336596.2:c.110C>A	p.Thr37Lys	p.T37K	ENST00000336596	NM_005233.5	37	aCa/aAa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259389	89259389	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	219	524	0	ENST00000336596.2:c.533G>T	p.Gly178Val	p.G178V	ENST00000336596	NM_005233.5	178	gGa/gTa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048734	180048734	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	100	772	0	ENST00000261937.6:c.1828T>C	p.Cys610Arg	p.C610R	ENST00000261937	NM_182925.4	610	Tgc/Cgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0036547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	36	331	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0036547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	47	444	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0036547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	86	446	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	55	293	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436553	49436553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	286	731	0	ENST00000301067.7:c.5753G>A	p.Arg1918His	p.R1918H	ENST00000301067	NM_003482.3	1918	cGt/cAt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11264751	11264751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	135	560	0	ENST00000361445.4:c.3811G>A	p.Ala1271Thr	p.A1271T	ENST00000361445	NM_004958.3	1271	Gct/Act																																																																															
RB1	5925	MSKCC	GRCh37	13	48934229	48934229	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	43	420	0	ENST00000267163.4:c.684A>C	p.Lys228Asn	p.K228N	ENST00000267163	NM_000321.2	228	aaA/aaC																																																																															
APC	324	MSKCC	GRCh37	5	112175399	112175399	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	45	280	0	ENST00000257430.4:c.4111del	p.Ser1371ValfsTer44	p.S1371Vfs*44	ENST00000257430	NM_000038.5	1370	Aaa/aa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5044425	5044425	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	91	469	0	ENST00000381652.3:c.373T>C	p.Cys125Arg	p.C125R	ENST00000381652	NM_004972.3	125	Tgc/Cgc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900180	101900180	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	44	294	0	ENST00000374994.4:c.614T>G	p.Ile205Ser	p.I205S	ENST00000374994	NM_004612.2	205	aTt/aGt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911492	101911492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	35	279	0	ENST00000374994.4:c.1417G>A	p.Glu473Lys	p.E473K	ENST00000374994	NM_004612.2	473	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0036433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	40	414	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0036433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	16	244	0	ENST00000412916.2:c.165+1G>T		p.X55_splice	ENST00000412916		55																																																																																
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0036433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	58	444	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151896399	151896400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	67	598	0	ENST00000262189.6:c.4237dup	p.Ser1413LysfsTer16	p.S1413Kfs*16	ENST00000262189	NM_170606.2	1413	agt/aAgt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033245	69033245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	17	534	0	ENST00000288368.4:c.3685G>A	p.Val1229Ile	p.V1229I	ENST00000288368	NM_024870.2	1229	Gtc/Atc																																																																															
HRAS	3265	MSKCC	GRCh37	11	534289	534289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	299	422	0	ENST00000311189.7:c.34G>T	p.Gly12Cys	p.G12C	ENST00000311189		12	Ggc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057979	27057979	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	180	512	0	ENST00000324856.7:c.1687C>T	p.Gln563Ter	p.Q563*	ENST00000324856	NM_006015.4	563	Cag/Tag																																																																															
RB1	5925	MSKCC	GRCh37	13	49027168	49027168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	116	343	0	ENST00000267163.4:c.1735C>T	p.Arg579Ter	p.R579*	ENST00000267163	NM_000321.2	579	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717607	89717614	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGATCCT	CAGATCCT	-			P-0036529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	87	298	0	ENST00000371953.3:c.635_642del		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																																
TP53	7157	MSKCC	GRCh37	17	7577082	7577090	+	inframe_deletion	In_Frame_Del	DEL	CCTCTGTGC	CCTCTGTGC	-			P-0036529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	178	620	0	ENST00000269305.4:c.848_856del	p.Arg283_Glu286delinsGln	p.R283_E286delinsQ	ENST00000269305	NM_001126112.2	283	cGCACAGAGGaa/caa																																																																															
BARD1	580	MSKCC	GRCh37	2	215645944	215645945	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0036529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	103	484	0	ENST00000260947.4:c.653_654delinsCT	p.Trp218Ser	p.W218S	ENST00000260947	NM_000465.2	218	tGG/tCT																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661789	227661789	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	160	573	0	ENST00000305123.5:c.1666C>A	p.Pro556Thr	p.P556T	ENST00000305123	NM_005544.2	556	Cct/Act																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671451	30671451	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	150	655	0	ENST00000376406.3:c.5509G>C	p.Val1837Leu	p.V1837L	ENST00000376406	NM_014641.2	1837	Gtg/Ctg																																																																															
AR	367	MSKCC	GRCh37	X	66766305	66766305	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	57	299	0	ENST00000374690.3:c.1317C>A	p.Phe439Leu	p.F439L	ENST00000374690	NM_000044.3	439	ttC/ttA																																																																															
ATRX	546	MSKCC	GRCh37	X	76855227	76855227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	105	432	0	ENST00000373344.5:c.5760G>T	p.Met1920Ile	p.M1920I	ENST00000373344	NM_000489.3	1920	atG/atT																																																																															
STAG2	10735	MSKCC	GRCh37	X	123227882	123227882	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	90	301	0	ENST00000218089.9:c.3593G>C	p.Ser1198Thr	p.S1198T	ENST00000218089	NM_001042749.1	1198	aGc/aCc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421909	49421909	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	138	527	5	ENST00000301067.7:c.14398A>T	p.Met4800Leu	p.M4800L	ENST00000301067	NM_003482.3	4800	Atg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0036564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	26	715	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856178	111856178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	29	410	1	ENST00000341259.2:c.229C>T	p.Arg77Cys	p.R77C	ENST00000341259	NM_005475.2	77	Cgc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55229255	55229255	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs2227983		P-0036564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	27	518	0	ENST00000275493.2:c.1562G>T	p.Arg521Met	p.R521M	ENST00000275493	NM_005228.3	521	aGg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	129	434	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	217	703	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	36	227	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
BCL6	604	MSKCC	GRCh37	3	187451406	187451406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	38	402	1	ENST00000232014.4:c.76C>T	p.Arg26Trp	p.R26W	ENST00000232014	NM_001130845.1	26	Cgg/Tgg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729560	41729560	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	167	528	0	ENST00000242208.4:c.969G>T	p.Lys323Asn	p.K323N	ENST00000242208	NM_002192.2	323	aaG/aaT																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945097	31945097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	66	550	0	ENST00000340398.3:c.4G>T	p.Ala2Ser	p.A2S	ENST00000340398	NM_001013699.2	2	Gcc/Tcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431339	49431339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	49	528	0	ENST00000301067.7:c.9800C>T	p.Ser3267Leu	p.S3267L	ENST00000301067	NM_003482.3	3267	tCa/tTa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28963990	28963990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	54	403	0	ENST00000282397.4:c.1912G>A	p.Ala638Thr	p.A638T	ENST00000282397	NM_002019.4	638	Gcc/Acc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500316	99500316	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	90	623	1	ENST00000268035.6:c.3749A>T	p.Gln1250Leu	p.Q1250L	ENST00000268035	NM_000875.3	1250	cAg/cTg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182174	99182174	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	153	490	0	ENST00000074304.5:c.2239A>T	p.Thr747Ser	p.T747S	ENST00000074304	NM_001134224.1	747	Act/Tct																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098786	47098786	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	189	650	1	ENST00000409792.3:c.6488C>A	p.Pro2163His	p.P2163H	ENST00000409792	NM_014159.6	2163	cCc/cAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127579	55127579	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	45	238	0	ENST00000257290.5:c.367G>T	p.Asp123Tyr	p.D123Y	ENST00000257290	NM_006206.4	123	Gac/Tac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230763	66230763	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	55	341	0	ENST00000273854.3:c.2208C>G	p.Ile736Met	p.I736M	ENST00000273854	NM_004439.5	736	atC/atG																																																																															
INPP4B	8821	MSKCC	GRCh37	4	142949992	142949992	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	152	523	0	ENST00000262992.4:c.2718G>T	p.Met906Ile	p.M906I	ENST00000262992	NM_001101669.1	906	atG/atT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630275	187630275	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	98	559	0	ENST00000441802.2:c.707G>T	p.Gly236Val	p.G236V	ENST00000441802	NM_005245.3	236	gGc/gTc																																																																															
SDHA	6389	MSKCC	GRCh37	5	225630	225630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	140	458	2	ENST00000264932.6:c.409G>T	p.Asp137Tyr	p.D137Y	ENST00000264932	NM_004168.2	137	Gat/Tat																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32183043	32183043	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	249	665	0	ENST00000375023.3:c.1981C>A	p.Pro661Thr	p.P661T	ENST00000375023	NM_004557.3	661	Cct/Act																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971329	13971329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	111	371	1	ENST00000405192.2:c.600G>T	p.Leu200Phe	p.L200F	ENST00000405192	NM_001163147.1	200	ttG/ttT																																																																															
HGF	3082	MSKCC	GRCh37	7	81334710	81334710	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	136	504	0	ENST00000222390.5:c.2006G>C	p.Cys669Ser	p.C669S	ENST00000222390	NM_000601.4	669	tGt/tCt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486232	8486232	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs142397137		P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	51	337	0	ENST00000356435.5:c.2585G>T	p.Arg862Leu	p.R862L	ENST00000356435		862	cGc/cTc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934310	39934310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	175	590	0	ENST00000378444.4:c.289G>T	p.Gly97Cys	p.G97C	ENST00000378444	NM_001123385.1	97	Ggc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	215	474	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	771	686	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741757	17741757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	195	562	1	ENST00000250003.3:c.428G>A	p.Arg143Gln	p.R143Q	ENST00000250003	NM_002478.4	143	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175754	112175755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	98	354	0	ENST00000257430.4:c.4464dup	p.Leu1489IlefsTer25	p.L1489Ifs*25	ENST00000257430	NM_000038.5	1488	tta/ttAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32921012	32921031	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CGATTACCTGTGTACCCTTT	CGATTACCTGTGTACCCTTT	-			P-0036572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	95	430	0	ENST00000380152.3:c.6988_7007del	p.Ile2330HisfsTer3	p.I2330Hfs*3	ENST00000380152		2329	cCGATTACCTGTGTACCCTTT/c																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518083	103518083	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	63	264	0	ENST00000355739.4:c.2021C>G	p.Ser674Cys	p.S674C	ENST00000355739	NM_000123.3	674	tCc/tGc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40469203	40469220	+	inframe_deletion	In_Frame_Del	DEL	GTCACACAGATAAACTTG	GTCACACAGATAAACTTG	-			P-0036572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	185	271	0	ENST00000264657.5:c.2124_2141del	p.Lys709_Thr714del	p.K709_T714del	ENST00000264657	NM_139276.2	708	acCAAGTTTATCTGTGTGACa/aca																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468390	89468390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	92	212	0	ENST00000336596.2:c.1924C>A	p.Leu642Ile	p.L642I	ENST00000336596	NM_005233.5	642	Ctt/Att																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066525	94066525	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	172	346	0	ENST00000369303.4:c.1234A>C	p.Thr412Pro	p.T412P	ENST00000369303	NM_004440.3	412	Act/Cct																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913396		P-0036594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	11	297	0	ENST00000349496.5:c.95A>G	p.Asp32Gly	p.D32G	ENST00000349496	NM_001904.3	32	gAc/gGc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0036594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	231	532	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619219	37619241	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAGATCTGTCAGTCCCTATAG	CAGAGATCTGTCAGTCCCTATAG	-			P-0036594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	152	460	0	ENST00000447079.4:c.898_920del	p.Arg300GlufsTer43	p.R300Efs*43	ENST00000447079	NM_015083.1	299	CAGAGATCTGTCAGTCCCTATAGc/c																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	121	457	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	221	804	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495040	56495040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	117	733	0	ENST00000267101.3:c.3397C>T	p.His1133Tyr	p.H1133Y	ENST00000267101	NM_001982.3	1133	Cat/Tat																																																																															
MPL	4352	MSKCC	GRCh37	1	43805049	43805049	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	117	725	0	ENST00000372470.3:c.499T>C	p.Tyr167His	p.Y167H	ENST00000372470	NM_005373.2	167	Tac/Cac																																																																															
MSI1	4440	MSKCC	GRCh37	12	120789170	120789170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	167	508	1	ENST00000257552.2:c.767C>T	p.Ala256Val	p.A256V	ENST00000257552	NM_002442.3	256	gCc/gTc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610504	81610504	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758957398		P-0036595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	173	520	0	ENST00000298171.2:c.2102G>A	p.Arg701His	p.R701H	ENST00000298171	NM_000369.2	701	cGc/cAc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370186	40370186	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	273	945	0	ENST00000293328.3:c.1152G>T	p.Lys384Asn	p.K384N	ENST00000293328	NM_012448.3	384	aaG/aaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0036597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	93	693	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	48	787	0	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367348	50367348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	23	362	0	ENST00000331340.3:c.155T>G	p.Val52Gly	p.V52G	ENST00000331340	NM_006060.4	52	gTc/gGc																																																																															
APC	324	MSKCC	GRCh37	5	112175378	112175378	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0036598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	75	238	0	ENST00000257430.4:c.4087A>T	p.Lys1363Ter	p.K1363*	ENST00000257430	NM_000038.5	1363	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174793	112174793	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	80	229	0	ENST00000257430.4:c.3502G>T	p.Glu1168Ter	p.E1168*	ENST00000257430	NM_000038.5	1168	Gaa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087448	27087448	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	520	641	5	ENST00000324856.7:c.2022del	p.Ser674ArgfsTer68	p.S674Rfs*68	ENST00000324856	NM_006015.4	674	agT/ag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857323	9857323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	124	397	1	ENST00000330684.3:c.4078G>T	p.Asp1360Tyr	p.D1360Y	ENST00000330684	NM_001134407.1	1360	Gac/Tac																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118922	70118922	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	236	611	0	ENST00000245479.2:c.494A>G	p.His165Arg	p.H165R	ENST00000245479	NM_000346.3	165	cAc/cGc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119798	70119799	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	215	522	2	ENST00000245479.2:c.801dup	p.Ile268TyrfsTer28	p.I268Yfs*28	ENST00000245479	NM_000346.3	267	cct/ccTt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101908830	101908841	+	inframe_deletion	In_Frame_Del	DEL	TGCTGACATCTA	TGCTGACATCTA	-			P-0036598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	203	570	5	ENST00000374994.4:c.1197_1208del	p.Asp400_Ala403del	p.D400_A403del	ENST00000374994	NM_004612.2	398	cgTGCTGACATCTAt/cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0036665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	204	587	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	160	439	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25457288	25457288	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0036665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	118	404	1	ENST00000264709.3:c.2599G>T	p.Val867Leu	p.V867L	ENST00000264709	NM_175629.2	867	Gta/Tta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	34	693	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0036666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	43	405	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0036666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	63	569	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730876	40730876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	60	682	0	ENST00000373198.4:c.3659G>A	p.Arg1220Gln	p.R1220Q	ENST00000373198	NM_133170.3	1220	cGg/cAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117614	70117614	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	122	623	0	ENST00000245479.2:c.82G>T	p.Glu28Ter	p.E28*	ENST00000245479	NM_000346.3	28	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577497	7577497	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0036666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	59	649	0	ENST00000269305.4:c.782+2T>G		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134911573	134911573	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	64	574	0	ENST00000398015.3:c.2038A>G	p.Ile680Val	p.I680V	ENST00000398015	NM_004441.4	680	Atc/Gtc																																																																															
RB1	5925	MSKCC	GRCh37	13	48953729	48953729	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0035896-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			296	25	279	0	ENST00000267163.4:c.1333-1G>A		p.X445_splice	ENST00000267163	NM_000321.2	445																																																																																
MET	4233	MSKCC	GRCh37	7	116412033	116412058	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTCCAGAAGGTATATTTCAGTTTA	TTTTCCAGAAGGTATATTTCAGTTTA	-			P-0035896-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			741	123	890	0	ENST00000397752.3:c.3020_3028+17del		p.X1007_splice	ENST00000397752	NM_000245.2	1007																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118373870	118373870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035896-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			298	26	350	0	ENST00000534358.1:c.7263G>A	p.Met2421Ile	p.M2421I	ENST00000534358	NM_005933.3	2421	atG/atA																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149441370	149441370	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035896-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			685	108	729	0	ENST00000286301.3:c.1669G>T	p.Glu557Ter	p.E557*	ENST00000286301	NM_005211.3	557	Gag/Tag																																																																															
FYN	2534	MSKCC	GRCh37	6	112017516	112017516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035896-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			443	31	454	0	ENST00000368678.4:c.997G>A	p.Glu333Lys	p.E333K	ENST00000368678		333	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0036287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	25	408	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	123	552	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0036289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	118	625	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857047	9857047	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs568622613		P-0036289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	58	404	0	ENST00000330684.3:c.4354C>T	p.Arg1452Cys	p.R1452C	ENST00000330684	NM_001134407.1	1452	Cgc/Tgc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	90	519	0	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																															
JUN	3725	MSKCC	GRCh37	1	59248339	59248351	+	frameshift_variant	Frame_Shift_Del	DEL	TGCGCCGCCGACG	TGCGCCGCCGACG	-			P-0036289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	30	174	0	ENST00000371222.2:c.392_404del	p.Thr131SerfsTer13	p.T131Sfs*13	ENST00000371222	NM_002228.3	131	aCGTCGGCGGCGCAg/ag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285676	46285676	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	57	491	0	ENST00000334344.6:c.5037del	p.Ser1681LeufsTer20	p.S1681Lfs*20	ENST00000334344	NM_152641.2	1679	cGg/cg																																																																															
APC	324	MSKCC	GRCh37	5	112174831	112174831	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	90	330	0	ENST00000257430.4:c.3542del	p.Leu1181Ter	p.L1181*	ENST00000257430	NM_000038.5	1180	agT/ag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711927	89711928	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	325	500	0	ENST00000371953.3:c.548dup	p.Asn184GlufsTer6	p.N184Efs*6	ENST00000371953	NM_000314.4	182	tta/ttAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55210058	55210058	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	187	630	0	ENST00000275493.2:c.168T>G	p.Asn56Lys	p.N56K	ENST00000275493	NM_005228.3	56	aaT/aaG																																																																															
SPEN	23013	MSKCC	GRCh37	1	16245933	16245933	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	254	411	0	ENST00000375759.3:c.1556T>A	p.Val519Glu	p.V519E	ENST00000375759	NM_015001.2	519	gTg/gAg																																																																															
SMO	6608	MSKCC	GRCh37	7	128829066	128829066	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs41304185		P-0036301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	14	14	0	ENST00000249373.3:c.74A>G	p.Asp25Gly	p.D25G	ENST00000249373	NM_005631.4	25	gAc/gGc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281359	49281359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	538	833	2	ENST00000282018.3:c.406C>T	p.Arg136Cys	p.R136C	ENST00000282018	NM_020377.2	136	Cgt/Tgt																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46543255	46543255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	334	551	1	ENST00000262741.5:c.246G>T	p.Met82Ile	p.M82I	ENST00000262741	NM_003629.3	82	atG/atT																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52613205	52613207	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0036301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	133	606	0	ENST00000394830.3:c.3321_3323del	p.Glu1107del	p.E1107del	ENST00000394830	NM_018313.4	1107	gaAGAt/gat																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111499	8111522	+	frameshift_variant	Frame_Shift_Del	DEL	AGGAGGAATGCCAATGGGGACCCT	AGGAGGAATGCCAATGGGGACCCT	TCCTCCTCCA			P-0036301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	263	581	2	ENST00000346208.3:c.985_1008delinsTCCTCCTCCA	p.Arg329SerfsTer18	p.R329Sfs*18	ENST00000346208		329	AGGAGGAATGCCAATGGGGACCCT/TCCTCCTCCA																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	78	276	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	146	624	3	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437565	56437566	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	151	502	0	ENST00000407977.2:c.896_897delTG	p.Val299GlyfsTer143	p.V299Gfs*143	ENST00000407977		299	gTG/g																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	93	355	2	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44950066	44950066	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	125	262	0	ENST00000377967.4:c.3835C>T	p.Arg1279Ter	p.R1279*	ENST00000377967	NM_021140.2	1279	Cga/Tga																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	83	445	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	323	643	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	14	42	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																															
TP63	8626	MSKCC	GRCh37	3	189612175	189612175	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	109	482	1	ENST00000264731.3:c.1927C>T	p.Arg643Ter	p.R643*	ENST00000264731	NM_003722.4	643	Cga/Tga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	207	372	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289271	33289271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	111	379	2	ENST00000374542.5:c.281G>A	p.Arg94His	p.R94H	ENST00000374542	NM_001141970.1	94	cGt/cAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	150	424	2	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	75	293	1	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
CIC	23152	MSKCC	GRCh37	19	42799098	42799098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	197	816	4	ENST00000575354.2:c.4586delC	p.Pro1529LeufsTer91	p.P1529Lfs*91	ENST00000575354	NM_015125.3	1528	Ccc/cc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	108	383	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	105	488	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																															
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	282	694	3	ENST00000575354.2:c.3743delC	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030692	48030692	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	105	364	1	ENST00000234420.5:c.3312delT	p.Phe1104LeufsTer11	p.F1104Lfs*11	ENST00000234420	NM_000179.2	1102	acT/ac																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39629562	39629562	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	78	313	0	ENST00000262039.4:c.2260del	p.Thr754GlnfsTer7	p.T754Qfs*7	ENST00000262039	NM_002647.2	752	acA/ac																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89337296	89337296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	107	497	0	ENST00000301030.4:c.7735C>T	p.Arg2579Cys	p.R2579C	ENST00000301030	NM_001256183.1	2579	Cgc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630938	187630938	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	86	474	0	ENST00000441802.2:c.44T>G	p.Phe15Cys	p.F15C	ENST00000441802	NM_005245.3	15	tTc/tGc																																																																															
TET2	54790	MSKCC	GRCh37	4	106158187	106158187	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	79	348	1	ENST00000380013.4:c.3088C>T	p.Gln1030Ter	p.Q1030*	ENST00000380013	NM_001127208.2	1030	Cag/Tag																																																																															
ALK	238	MSKCC	GRCh37	2	30143440	30143440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	73	241	0	ENST00000389048.3:c.86C>T	p.Ala29Val	p.A29V	ENST00000389048	NM_004304.4	29	gCg/gTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262680	16262680	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	74	304	3	ENST00000375759.3:c.9950delC	p.Pro3317ArgfsTer83	p.P3317Rfs*83	ENST00000375759	NM_015001.2	3315	caC/ca																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162414	47162414	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	118	461	0	ENST00000409792.3:c.3712del	p.Ser1238LeufsTer21	p.S1238Lfs*21	ENST00000409792	NM_014159.6	1238	Tct/ct																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432117	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	58	591	0	ENST00000257555.6:c.864_865del	p.Pro291ArgfsTer25	p.P291Rfs*25	ENST00000257555		288	ggGCcc/ggcc																																																																															
ALK	238	MSKCC	GRCh37	2	30143052	30143052	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	135	614	1	ENST00000389048.3:c.474del	p.Glu160ArgfsTer26	p.E160Rfs*26	ENST00000389048	NM_004304.4	158	ccC/cc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099468	157099470	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-	rs1429292576		P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	50	202	0	ENST00000346085.5:c.413_415del	p.Asn138del	p.N138del	ENST00000346085	NM_020732.3	135	tcCAAc/tcc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905324	50905324	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	181	808	1	ENST00000440232.2:c.537del	p.Arg180GlyfsTer3	p.R180Gfs*3	ENST00000440232	NM_002691.3	178	Ggg/gg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120199	70120199	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	109	502	1	ENST00000245479.2:c.1201C>T	p.Gln401Ter	p.Q401*	ENST00000245479	NM_000346.3	401	Cag/Tag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508473	106508473	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1370328855		P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	34	183	0	ENST00000359195.3:c.467C>T	p.Ala156Val	p.A156V	ENST00000359195	NM_002649.2	156	gCg/gTg																																																																															
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	140	558	1	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448480	49448480	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	69	505	0	ENST00000301067.7:c.231del	p.His77GlnfsTer53	p.H77Qfs*53	ENST00000301067	NM_003482.3	77	caC/ca																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204992	128204992	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	117	591	0	ENST00000341105.2:c.449del	p.Gly150GlufsTer68	p.G150Efs*68	ENST00000341105	NM_032638.4	150	gGa/ga																																																																															
SESN3	143686	MSKCC	GRCh37	11	94924618	94924618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	172	600	0	ENST00000536441.1:c.292C>T	p.Arg98Cys	p.R98C	ENST00000536441	NM_144665.3	98	Cgc/Tgc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376683	118376683	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149340870		P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	42	415	0	ENST00000534358.1:c.10076C>T	p.Ala3359Val	p.A3359V	ENST00000534358	NM_005933.3	3359	gCg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223967	36223967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	195	767	0	ENST00000222270.7:c.6517C>T	p.Arg2173Trp	p.R2173W	ENST00000222270	NM_014727.1	2173	Cgg/Tgg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987117	36987117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	125	560	0	ENST00000354822.5:c.572G>A	p.Arg191His	p.R191H	ENST00000354822	NM_001079668.2	191	cGc/cAc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970916	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	127	492	0	ENST00000265081.6:c.1147_1148del	p.Lys383GlyfsTer20	p.K383Gfs*20	ENST00000265081	NM_002439.4	381	AAa/a																																																																															
ATRX	546	MSKCC	GRCh37	X	76764100	76764100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	32	216	0	ENST00000373344.5:c.7208G>A	p.Ser2403Asn	p.S2403N	ENST00000373344	NM_000489.3	2403	aGc/aAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779184	3779184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	100	503	0	ENST00000262367.5:c.5864C>T	p.Ala1955Val	p.A1955V	ENST00000262367	NM_004380.2	1955	gCg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778371	3778371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	83	593	2	ENST00000262367.5:c.6677C>T	p.Ala2226Val	p.A2226V	ENST00000262367	NM_004380.2	2226	gCg/gTg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4117578	4117578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	150	575	0	ENST00000262948.5:c.142G>A	p.Glu48Lys	p.E48K	ENST00000262948	NM_030662.3	48	Gag/Aag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11308079	11308079	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	181	728	1	ENST00000361445.4:c.913G>T	p.Gly305Cys	p.G305C	ENST00000361445	NM_004958.3	305	Ggc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258976	16258976	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	140	492	0	ENST00000375759.3:c.6241C>T	p.Arg2081Ter	p.R2081*	ENST00000375759	NM_015001.2	2081	Cga/Tga																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932076	36932076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	120	538	0	ENST00000361632.4:c.2393G>T	p.Gly798Val	p.G798V	ENST00000361632		798	gGg/gTg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176054953	176054953	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	147	511	0	ENST00000367669.3:c.1100T>C	p.Leu367Ser	p.L367S	ENST00000367669	NM_022457.5	367	tTg/tCg																																																																															
FH	2271	MSKCC	GRCh37	1	241671901	241671901	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	98	368	0	ENST00000366560.3:c.738+2T>C		p.X246_splice	ENST00000366560	NM_000143.3	246																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71943988	71943988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	178	594	0	ENST00000298229.2:c.1921C>T	p.Arg641Trp	p.R641W	ENST00000298229	NM_001567.3	641	Cgg/Tgg																																																																															
POLE	5426	MSKCC	GRCh37	12	133209309	133209309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	143	584	1	ENST00000320574.5:c.6077G>T	p.Arg2026Met	p.R2026M	ENST00000320574	NM_006231.2	2026	aGg/aTg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563231	21563231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	155	722	0	ENST00000382592.4:c.688C>T	p.His230Tyr	p.H230Y	ENST00000382592	NM_014572.2	230	Cac/Tac																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563345	21563345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	208	931	0	ENST00000382592.4:c.574G>A	p.Glu192Lys	p.E192K	ENST00000382592	NM_014572.2	192	Gag/Aag																																																																															
MGA	23269	MSKCC	GRCh37	15	42058859	42058859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	97	353	0	ENST00000219905.7:c.8579G>A	p.Arg2860Gln	p.R2860Q	ENST00000219905	NM_001164273.1	2860	cGg/cAg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678391	88678391	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	195	855	3	ENST00000360948.2:c.1145del	p.Asn382ThrfsTer32	p.N382Tfs*32	ENST00000360948	NM_001012338.2	382	aAc/ac																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354362	354362	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	164	670	1	ENST00000262320.3:c.1196T>C	p.Val399Ala	p.V399A	ENST00000262320	NM_003502.3	399	gTg/gCg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134963	2134963	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	196	761	0	ENST00000219476.3:c.4505T>C	p.Leu1502Pro	p.L1502P	ENST00000219476	NM_000548.3	1502	cTg/cCg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15938115	15938115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	82	276	0	ENST00000268712.3:c.7099C>T	p.Pro2367Ser	p.P2367S	ENST00000268712	NM_006311.3	2367	Cca/Tca																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40364201	40364201	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	211	1000	0	ENST00000293328.3:c.1481T>C	p.Val494Ala	p.V494A	ENST00000293328	NM_012448.3	494	gTg/gCg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40371795	40371795	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	14	233	0	ENST00000293328.3:c.616C>T	p.Gln206Ter	p.Q206*	ENST00000293328	NM_012448.3	206	Cag/Tag																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59924499	59924499	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	127	386	0	ENST00000259008.2:c.590C>A	p.Ser197Tyr	p.S197Y	ENST00000259008	NM_032043.2	197	tCt/tAt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117927	70117927	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	60	287	0	ENST00000245479.2:c.395A>G	p.Asn132Ser	p.N132S	ENST00000245479	NM_000346.3	132	aAc/aGc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610562	10610562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	193	717	0	ENST00000171111.5:c.148C>T	p.Arg50Cys	p.R50C	ENST00000171111	NM_203500.1	50	Cgc/Tgc																																																																															
ERF	2077	MSKCC	GRCh37	19	42752787	42752787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	175	756	1	ENST00000222329.4:c.1477C>T	p.Arg493Cys	p.R493C	ENST00000222329	NM_006494.2	493	Cgc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419834	41419834	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	56	258	0	ENST00000373198.4:c.486+1G>T		p.X162_splice	ENST00000373198	NM_133170.3	162																																																																																
ERG	2078	MSKCC	GRCh37	21	39817459	39817459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	124	459	1	ENST00000288319.7:c.104C>T	p.Ala35Val	p.A35V	ENST00000288319	NM_182918.3	35	gCg/gTg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665333	138665333	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	153	781	1	ENST00000330315.3:c.232T>C	p.Ser78Pro	p.S78P	ENST00000330315	NM_023067.3	78	Tcc/Ccc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919293	178919293	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	55	193	0	ENST00000263967.3:c.778T>C	p.Tyr260His	p.Y260H	ENST00000263967	NM_006218.2	260	Tac/Cac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629493	187629493	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	117	614	1	ENST00000441802.2:c.1489T>C	p.Tyr497His	p.Y497H	ENST00000441802	NM_005245.3	497	Tac/Cac																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522614	176522614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	150	703	0	ENST00000292408.4:c.1711G>A	p.Asp571Asn	p.D571N	ENST00000292408	NM_213647.1	571	Gac/Aac																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523655	176523655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	151	745	0	ENST00000292408.4:c.2066C>T	p.Pro689Leu	p.P689L	ENST00000292408	NM_213647.1	689	cCg/cTg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200345	138200345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	119	414	1	ENST00000237289.4:c.1763C>T	p.Ala588Val	p.A588V	ENST00000237289	NM_001270507.1	588	gCt/gTt																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200369	138200369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	89	444	0	ENST00000237289.4:c.1787G>A	p.Arg596Gln	p.R596Q	ENST00000237289	NM_001270507.1	596	cGg/cAg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005591	150005591	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	88	312	0	ENST00000253339.5:c.634G>T	p.Gly212Ter	p.G212*	ENST00000253339		212	Gga/Tga																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969982	161969983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	98	518	1	ENST00000366898.1:c.986dup	p.Val330ArgfsTer17	p.V330Rfs*17	ENST00000366898	NM_004562.2	329	ggc/ggGc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69129931	69129931	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	30	270	0	ENST00000288368.4:c.4685C>A	p.Ala1562Asp	p.A1562D	ENST00000288368	NM_024870.2	1562	gCt/gAt																																																																															
NBN	4683	MSKCC	GRCh37	8	90995032	90995032	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	100	454	0	ENST00000265433.3:c.89A>G	p.Asn30Ser	p.N30S	ENST00000265433	NM_002485.4	30	aAc/aGc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376641	8376641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	88	437	0	ENST00000356435.5:c.4472C>T	p.Ala1491Val	p.A1491V	ENST00000356435		1491	gCc/gTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412624	139412624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	149	652	1	ENST00000277541.6:c.1220C>T	p.Pro407Leu	p.P407L	ENST00000277541	NM_017617.3	407	cCg/cTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041612	47041612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	171	303	1	ENST00000329236.7:c.1603C>T	p.Arg535Trp	p.R535W	ENST00000329236	NM_001204466.1	535	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178947827	178947827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	43	308	0	ENST00000263967.3:c.2702G>T	p.Cys901Phe	p.C901F	ENST00000263967	NM_006218.2	901	tGt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0036370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	117	493	0	ENST00000269305.4:c.782+1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
GATA3	2625	MSKCC	GRCh37	10	8111511	8111512	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	136	475	0	ENST00000346208.3:c.997_998insC	p.Asn333ThrfsTer19	p.N333Tfs*19	ENST00000346208		333	aat/aCat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152055670	152055670	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0036371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	179	655	0	ENST00000262189.6:c.250+2T>C		p.X84_splice	ENST00000262189	NM_170606.2	84																																																																																
NTRK1	4914	MSKCC	GRCh37	1	156838020	156838020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	189	704	0	ENST00000524377.1:c.553C>T	p.His185Tyr	p.H185Y	ENST00000524377	NM_002529.3	185	Cac/Tac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830824	72830824	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	249	680	0	ENST00000268489.5:c.5757del	p.Glu1920SerfsTer77	p.E1920Sfs*77	ENST00000268489	NM_006885.3	1919	aaA/aa																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156720	20156720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	25	229	0	ENST00000379607.5:c.37C>T	p.Arg13Cys	p.R13C	ENST00000379607	NM_001412.3	13	Cgc/Tgc																																																																															
MET	4233	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0036387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	51	703	0	ENST00000397752.3:c.3028+2T>G		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0036388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	123	355	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578192	7578192	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	75	458	0	ENST00000269305.4:c.657delC	p.Tyr220MetfsTer27	p.Y220Mfs*27	ENST00000269305	NM_001126112.2	219	ccC/cc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100049	157100049	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	12	65	1	ENST00000346085.5:c.986C>G	p.Ala329Gly	p.A329G	ENST00000346085	NM_020732.3	329	gCa/gGa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	33	317	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068283	30068283	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	34	343	0	ENST00000331968.5:c.2116G>T	p.Asp706Tyr	p.D706Y	ENST00000331968	NM_002742.2	706	Gac/Tac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435924	56435925	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0036389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	39	377	0	ENST00000407977.2:c.1211_1212dup	p.Leu405AlafsTer15	p.L405Afs*15	ENST00000407977		404	-/GC																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484233	8484233	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200684369		P-0036389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	52	517	0	ENST00000356435.5:c.3299C>T	p.Thr1100Met	p.T1100M	ENST00000356435		1100	aCg/aTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70342671	70342671	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	77	316	0	ENST00000374080.3:c.1432G>C	p.Asp478His	p.D478H	ENST00000374080		478	Gac/Cac																																																																															
SDHB	6390	MSKCC	GRCh37	1	17359612	17359612	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	153	392	0	ENST00000375499.3:c.229A>G	p.Ile77Val	p.I77V	ENST00000375499	NM_003000.2	77	Atc/Gtc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30103665	30103665	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	46	604	0	ENST00000331968.5:c.1273A>G	p.Lys425Glu	p.K425E	ENST00000331968	NM_002742.2	425	Aaa/Gaa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107749	30107749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	37	529	0	ENST00000331968.5:c.931C>T	p.Arg311Cys	p.R311C	ENST00000331968	NM_002742.2	311	Cgt/Tgt																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813954	50813954	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0036392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	55	408	2	ENST00000398568.2:c.1508T>C	p.Leu503Pro	p.L503P	ENST00000398568	NM_001042412.1	503	cTg/cCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822340	72822340	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	120	855	0	ENST00000268489.5:c.9835A>G	p.Met3279Val	p.M3279V	ENST00000268489	NM_006885.3	3279	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	243	659	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17118398	17118398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	221	698	0	ENST00000285071.4:c.1439C>T	p.Pro480Leu	p.P480L	ENST00000285071	NM_144997.5	480	cCc/cTc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436143	56436143	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	188	515	0	ENST00000407977.2:c.994del	p.Tyr332ThrfsTer87	p.Y332Tfs*87	ENST00000407977		332	Tac/ac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0036392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	102	438	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57478739	57478739	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	121	346	0	ENST00000371085.3:c.325G>T	p.Ala109Ser	p.A109S	ENST00000371085	NM_000516.4	109	Gcc/Tcc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	45	291	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
AR	367	MSKCC	GRCh37	X	66766405	66766405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	10	113	0	ENST00000374690.3:c.1417G>A	p.Gly473Ser	p.G473S	ENST00000374690	NM_000044.3	473	Ggc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242480	55242503	+	inframe_deletion	In_Frame_Del	DEL	AACATCTCCGAAAGCCAACAAGGA	AACATCTCCGAAAGCCAACAAGGA	-			P-0036397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	13	316	0	ENST00000275493.2:c.2252_2275del	p.Thr751_Glu758del	p.T751_E758del	ENST00000275493	NM_005228.3	750	gcAACATCTCCGAAAGCCAACAAGGAa/gca																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190826	11190826	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	44	316	0	ENST00000361445.4:c.5373T>G	p.His1791Gln	p.H1791Q	ENST00000361445	NM_004958.3	1791	caT/caG																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255338	16255338	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200134542		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	32	325	1	ENST00000375759.3:c.2603C>T	p.Ala868Val	p.A868V	ENST00000375759	NM_015001.2	868	gCg/gTg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599988	28599988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	35	537	0	ENST00000253063.3:c.870G>T	p.Glu290Asp	p.E290D	ENST00000253063	NM_031459.4	290	gaG/gaT																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932400	36932400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	52	541	0	ENST00000361632.4:c.2069C>T	p.Thr690Met	p.T690M	ENST00000361632		690	aCg/aTg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748102	72748102	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	118	382	0	ENST00000357731.5:c.76T>G	p.Cys26Gly	p.C26G	ENST00000357731	NM_173808.2	26	Tgc/Ggc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155880485	155880485	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	30	392	0	ENST00000368323.3:c.68A>C	p.Lys23Thr	p.K23T	ENST00000368323	NM_006912.5	23	aAa/aCa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740212	162740212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	56	387	0	ENST00000367921.3:c.1414G>A	p.Asp472Asn	p.D472N	ENST00000367921	NM_006182.2	472	Gat/Aat																																																																															
DDR2	4921	MSKCC	GRCh37	1	162743288	162743288	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	12	167	0	ENST00000367921.3:c.1758A>C	p.Glu586Asp	p.E586D	ENST00000367921	NM_006182.2	586	gaA/gaC																																																																															
CDC73	79577	MSKCC	GRCh37	1	193099338	193099338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	67	326	0	ENST00000367435.3:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000367435	NM_024529.4	91	cGa/cAa																																																																															
IL10	3586	MSKCC	GRCh37	1	206942067	206942067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	89	291	0	ENST00000423557.1:c.451G>A	p.Glu151Lys	p.E151K	ENST00000423557	NM_000572.2	151	Gag/Aag																																																																															
RET	5979	MSKCC	GRCh37	10	43606911	43606911	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	62	647	0	ENST00000355710.3:c.1520C>A	p.Ser507Ter	p.S507*	ENST00000355710	NM_020975.4	507	tCa/tAa																																																																															
RET	5979	MSKCC	GRCh37	10	43607663	43607663	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	191	685	1	ENST00000355710.3:c.1639G>T	p.Asp547Tyr	p.D547Y	ENST00000355710	NM_020975.4	547	Gat/Tat																																																																															
TET1	80312	MSKCC	GRCh37	10	70332565	70332565	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs185830524		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	96	393	0	ENST00000373644.4:c.470C>T	p.Ser157Leu	p.S157L	ENST00000373644	NM_030625.2	157	tCg/tTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70450904	70450904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	38	379	0	ENST00000373644.4:c.5744C>T	p.Ala1915Val	p.A1915V	ENST00000373644	NM_030625.2	1915	gCt/gTt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683424	88683424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	51	181	0	ENST00000372037.3:c.1547G>T	p.Arg516Ile	p.R516I	ENST00000372037	NM_004329.2	516	aGa/aTa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	21	348	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920404	114920404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	42	398	0	ENST00000543371.1:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000543371	NM_001198531.1	449	Gca/Aca																																																																															
LMO1	4004	MSKCC	GRCh37	11	8251853	8251853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	152	474	0	ENST00000335790.3:c.224G>A	p.Arg75Gln	p.R75Q	ENST00000335790	NM_002315.2	75	cGa/cAa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94170371	94170371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	23	292	0	ENST00000323929.3:c.1898G>A	p.Arg633Gln	p.R633Q	ENST00000323929	NM_005591.3	633	cGa/cAa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180586	94180586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	75	314	0	ENST00000323929.3:c.1582G>A	p.Ala528Thr	p.A528T	ENST00000323929	NM_005591.3	528	Gca/Aca																																																																															
SESN3	143686	MSKCC	GRCh37	11	94908780	94908780	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	88	419	0	ENST00000536441.1:c.1274T>G	p.Val425Gly	p.V425G	ENST00000536441	NM_144665.3	425	gTt/gGt																																																																															
ATM	472	MSKCC	GRCh37	11	108142026	108142026	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	71	392	0	ENST00000278616.4:c.2970T>G	p.Ile990Met	p.I990M	ENST00000278616	NM_000051.3	990	atT/atG																																																																															
CBL	867	MSKCC	GRCh37	11	119149251	119149251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	12	455	1	ENST00000264033.4:c.1259G>A	p.Arg420Gln	p.R420Q	ENST00000264033	NM_005188.3	420	cGa/cAa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	419112	419112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	27	243	0	ENST00000399788.2:c.3235G>A	p.Asp1079Asn	p.D1079N	ENST00000399788	NM_001042603.1	1079	Gac/Aac																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793390	18793390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	17	361	1	ENST00000266497.5:c.4087G>A	p.Ala1363Thr	p.A1363T	ENST00000266497		1363	Gca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378649	25378649	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	75	346	0	ENST00000256078.4:c.349A>C	p.Lys117Gln	p.K117Q	ENST00000256078	NM_033360.2	117	Aaa/Caa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894365		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	25	360	0	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1424958105		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	12	388	0	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436643	49436643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	141	475	0	ENST00000301067.7:c.5663C>T	p.Ser1888Phe	p.S1888F	ENST00000301067	NM_003482.3	1888	tCc/tTc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487277	56487277	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1035001455		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	95	407	0	ENST00000267101.3:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000267101	NM_001982.3	475	Cgg/Tgg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864148	57864148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	40	389	0	ENST00000228682.2:c.1625G>A	p.Arg542His	p.R542H	ENST00000228682	NM_005269.2	542	cGc/cAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118902	115118903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	69	260	0	ENST00000257566.3:c.438dup	p.Ala147SerfsTer13	p.A147Sfs*13	ENST00000257566	NM_016569.3	146	-/A																																																																															
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	109	395	0	ENST00000320574.5:c.1231G>C	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ctg																																																																															
POLE	5426	MSKCC	GRCh37	12	133257249	133257249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	32	389	2	ENST00000320574.5:c.229C>T	p.Arg77Cys	p.R77C	ENST00000320574	NM_006231.2	77	Cgc/Tgc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26911760	26911760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	15	309	0	ENST00000381527.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000381527	NM_001260.1	62	tCg/tTg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26967528	26967528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	13	244	0	ENST00000381527.3:c.671T>G	p.Phe224Cys	p.F224C	ENST00000381527	NM_001260.1	224	tTt/tGt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28602426	28602426	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	37	340	0	ENST00000241453.7:c.1943-1G>A		p.X648_splice	ENST00000241453	NM_004119.2	648																																																																																
FLT1	2321	MSKCC	GRCh37	13	28979966	28979966	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs61763181		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	19	508	0	ENST00000282397.4:c.1502G>T	p.Arg501Ile	p.R501I	ENST00000282397	NM_002019.4	501	aGa/aTa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910615	32910615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	14	298	0	ENST00000380152.3:c.2123C>A	p.Ser708Tyr	p.S708Y	ENST00000380152		708	tCt/tAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913065	32913065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	66	340	0	ENST00000380152.3:c.4573C>A	p.His1525Asn	p.H1525N	ENST00000380152		1525	Cat/Aat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32944627	32944627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	98	441	0	ENST00000380152.3:c.8420C>T	p.Ser2807Leu	p.S2807L	ENST00000380152		2807	tCg/tTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972596	32972596	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	68	327	0	ENST00000380152.3:c.9946G>T	p.Glu3316Ter	p.E3316*	ENST00000380152		3316	Gaa/Taa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73335850	73335850	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	37	337	0	ENST00000377767.4:c.2445A>C	p.Lys815Asn	p.K815N	ENST00000377767	NM_014953.3	815	aaA/aaC																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68353761	68353761	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	15	248	0	ENST00000487270.1:c.596T>G	p.Ile199Ser	p.I199S	ENST00000487270	NM_133509.3	199	aTt/aGt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562587	95562587	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	75	245	0	ENST00000343455.3:c.4670A>C	p.Lys1557Thr	p.K1557T	ENST00000343455	NM_177438.2	1557	aAa/aCa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95571510	95571510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	42	298	0	ENST00000343455.3:c.3167G>A	p.Ser1056Asn	p.S1056N	ENST00000343455	NM_177438.2	1056	aGc/aAc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95584041	95584041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	23	394	0	ENST00000343455.3:c.1427G>A	p.Ser476Asn	p.S476N	ENST00000343455	NM_177438.2	476	aGc/aAc																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023066	33023066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	71	267	0	ENST00000300177.4:c.175G>A	p.Gly59Arg	p.G59R	ENST00000300177	NM_001191322.1	59	Ggg/Agg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88670452	88670452	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143617169		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	64	221	0	ENST00000360948.2:c.1234G>A	p.Glu412Lys	p.E412K	ENST00000360948	NM_001012338.2	412	Gaa/Aaa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641249	3641249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	224	646	2	ENST00000294008.3:c.2390G>A	p.Gly797Asp	p.G797D	ENST00000294008	NM_032444.2	797	gGc/gAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778758	3778758	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	72	745	0	ENST00000262367.5:c.6290T>C	p.Met2097Thr	p.M2097T	ENST00000262367	NM_004380.2	2097	aTg/aCg																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349000	11349000	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	35	408	0	ENST00000332029.2:c.336T>G	p.Phe112Leu	p.F112L	ENST00000332029	NM_003745.1	112	ttT/ttG																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30133307	30133307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	41	481	0	ENST00000263025.4:c.191G>A	p.Arg64His	p.R64H	ENST00000263025	NM_002746.2	64	cGc/cAc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81888076	81888076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	31	291	0	ENST00000359376.3:c.221G>A	p.Arg74His	p.R74H	ENST00000359376	NM_002661.3	74	cGc/cAc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81957097	81957097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	82	314	0	ENST00000359376.3:c.2315G>T	p.Arg772Ile	p.R772I	ENST00000359376	NM_002661.3	772	aGa/aTa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81968055	81968055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	31	259	0	ENST00000359376.3:c.2761G>A	p.Glu921Lys	p.E921K	ENST00000359376	NM_002661.3	921	Gag/Aag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89371746	89371746	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	28	401	0	ENST00000301030.4:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000301030	NM_001256183.1	32	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	23	505	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7983112	7983112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	42	423	1	ENST00000319144.4:c.902G>A	p.Gly301Glu	p.G301E	ENST00000319144	NM_001139.2	301	gGa/gAa																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110655	8110655	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	48	409	0	ENST00000585124.1:c.237T>G	p.Ile79Met	p.I79M	ENST00000585124	NM_004217.3	79	atT/atG																																																																															
NF1	4763	MSKCC	GRCh37	17	29533316	29533316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	17	189	0	ENST00000358273.4:c.1319G>A	p.Arg440Gln	p.R440Q	ENST00000358273	NM_001042492.2	440	cGa/cAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29663484	29663484	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	32	336	0	ENST00000358273.4:c.6140C>A	p.Ser2047Ter	p.S2047*	ENST00000358273	NM_001042492.2	2047	tCa/tAa																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30320971	30320971	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	23	461	0	ENST00000322652.5:c.1381T>C	p.Tyr461His	p.Y461H	ENST00000322652	NM_015355.2	461	Tat/Cat																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245303	41245303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	32	603	0	ENST00000357654.3:c.2245G>T	p.Asp749Tyr	p.D749Y	ENST00000357654	NM_007294.3	749	Gat/Tat																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58701094	58701094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	31	403	0	ENST00000305921.3:c.685G>A	p.Glu229Lys	p.E229K	ENST00000305921	NM_003620.3	229	Gaa/Aaa																																																																															
YES1	7525	MSKCC	GRCh37	18	736915	736915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	94	430	0	ENST00000314574.4:c.1184G>A	p.Arg395Gln	p.R395Q	ENST00000314574	NM_005433.3	395	cGa/cAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	46	367	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604736	48604736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	22	308	0	ENST00000342988.3:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000342988	NM_005359.5	520	Gaa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604755	48604755	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	91	301	0	ENST00000342988.3:c.1577A>C	p.Glu526Ala	p.E526A	ENST00000342988	NM_005359.5	526	gAa/gCa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244223	5244223	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199851847		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	58	477	0	ENST00000357368.4:c.1259G>A	p.Arg420His	p.R420H	ENST00000357368	NM_002850.3	420	cGc/cAc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265724	10265724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	45	356	0	ENST00000340748.4:c.1453G>A	p.Glu485Lys	p.E485K	ENST00000340748		485	Gaa/Aaa																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19261504	19261504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	84	473	0	ENST00000162023.5:c.41A>G	p.Gln14Arg	p.Q14R	ENST00000162023		14	cAa/cGa																																																																															
AXL	558	MSKCC	GRCh37	19	41765576	41765576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	55	473	0	ENST00000301178.4:c.2452G>A	p.Glu818Lys	p.E818K	ENST00000301178	NM_021913.4	818	Gaa/Aaa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972919	25972919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	21	340	0	ENST00000435504.4:c.1506G>T	p.Glu502Asp	p.E502D	ENST00000435504		502	gaG/gaT																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26029109	26029109	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	19	255	0	ENST00000435504.4:c.241T>C	p.Tyr81His	p.Y81H	ENST00000435504		81	Tat/Cat																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068357	26068357	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	43	396	0	ENST00000435504.4:c.133G>T	p.Glu45Ter	p.E45*	ENST00000435504		45	Gaa/Taa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025841	48025841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	15	186	0	ENST00000234420.5:c.719G>A	p.Arg240Gln	p.R240Q	ENST00000234420	NM_000179.2	240	cGa/cAa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99136593	99136593	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770686205		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	38	397	0	ENST00000074304.5:c.82G>A	p.Asp28Asn	p.D28N	ENST00000074304	NM_001134224.1	28	Gac/Aac																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266478	198266478	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	38	261	0	ENST00000335508.6:c.2358A>C	p.Lys786Asn	p.K786N	ENST00000335508	NM_012433.2	786	aaA/aaC																																																																															
CASP8	841	MSKCC	GRCh37	2	202131357	202131357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	40	337	0	ENST00000358485.4:c.325G>A	p.Glu109Lys	p.E109K	ENST00000358485	NM_001080125.1	109	Gaa/Aaa																																																																															
IDH1	3417	MSKCC	GRCh37	2	209108194	209108194	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	80	347	0	ENST00000345146.2:c.655T>G	p.Tyr219Asp	p.Y219D	ENST00000345146	NM_005896.2	219	Tat/Gat																																																																															
BARD1	580	MSKCC	GRCh37	2	215645637	215645637	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	28	462	0	ENST00000260947.4:c.961A>C	p.Lys321Gln	p.K321Q	ENST00000260947	NM_000465.2	321	Aaa/Caa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730910	40730910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	35	401	1	ENST00000373198.4:c.3625C>T	p.Arg1209Trp	p.R1209W	ENST00000373198	NM_133170.3	1209	Cgg/Tgg																																																																															
AURKA	6790	MSKCC	GRCh37	20	54959339	54959339	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	26	328	0	ENST00000312783.6:c.361G>T	p.Glu121Ter	p.E121*	ENST00000312783	NM_198436.1	121	Gaa/Taa																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42843742	42843742	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	139	387	0	ENST00000398585.3:c.1177A>C	p.Thr393Pro	p.T393P	ENST00000398585	NM_001135099.1	393	Act/Cct																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	34	219	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41268823	41268823	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	74	395	0	ENST00000349496.5:c.1061A>C	p.Lys354Thr	p.K354T	ENST00000349496	NM_001904.3	354	aAg/aCg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275123	41275123	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	69	288	0	ENST00000349496.5:c.1289A>C	p.Asn430Thr	p.N430T	ENST00000349496	NM_001904.3	430	aAt/aCt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163731	47163731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	24	341	0	ENST00000409792.3:c.2395G>A	p.Asp799Asn	p.D799N	ENST00000409792	NM_014159.6	799	Gat/Aat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164855	47164855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	72	249	0	ENST00000409792.3:c.1271G>A	p.Arg424Gln	p.R424Q	ENST00000409792	NM_014159.6	424	cGa/cAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164922	47164922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	50	218	2	ENST00000409792.3:c.1204C>T	p.Arg402Trp	p.R402W	ENST00000409792	NM_014159.6	402	Cgg/Tgg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164999	47164999	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	26	291	0	ENST00000409792.3:c.1127A>C	p.Lys376Thr	p.K376T	ENST00000409792	NM_014159.6	376	aAa/aCa																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119720928	119720928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	28	387	0	ENST00000316626.5:c.247G>A	p.Ala83Thr	p.A83T	ENST00000316626		83	Gcc/Acc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670327	134670327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	88	294	0	ENST00000398015.3:c.238C>T	p.Arg80Trp	p.R80W	ENST00000398015	NM_004441.4	80	Cgg/Tgg																																																																															
ATR	545	MSKCC	GRCh37	3	142242880	142242880	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	108	387	0	ENST00000350721.4:c.4107A>C	p.Leu1369Phe	p.L1369F	ENST00000350721	NM_001184.3	1369	ttA/ttC																																																																															
ATR	545	MSKCC	GRCh37	3	142281484	142281484	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	104	489	0	ENST00000350721.4:c.760G>T	p.Glu254Ter	p.E254*	ENST00000350721	NM_001184.3	254	Gaa/Taa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191328	185191328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	127	438	0	ENST00000265026.3:c.2209C>T	p.Pro737Ser	p.P737S	ENST00000265026	NM_004721.4	737	Cca/Tca																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186506987	186506987	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	23	223	0	ENST00000323963.5:c.1153C>A	p.Leu385Ile	p.L385I	ENST00000323963		385	Ctt/Att																																																																															
KDR	3791	MSKCC	GRCh37	4	55981522	55981522	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	38	352	0	ENST00000263923.4:c.415A>C	p.Thr139Pro	p.T139P	ENST00000263923	NM_002253.2	139	Act/Cct																																																																															
TET2	54790	MSKCC	GRCh37	4	106196213	106196213	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	15	173	0	ENST00000380013.4:c.4546C>T	p.Arg1516Ter	p.R1516*	ENST00000380013	NM_001127208.2	1516	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332915	153332915	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200698994		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	87	334	0	ENST00000281708.4:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000281708	NM_033632.3	14	cGa/cAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524651	187524651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	172	505	1	ENST00000441802.2:c.11029G>A	p.Asp3677Asn	p.D3677N	ENST00000441802	NM_005245.3	3677	Gac/Aac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524834	187524834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	80	525	1	ENST00000441802.2:c.10846G>A	p.Val3616Ile	p.V3616I	ENST00000441802	NM_005245.3	3616	Gta/Ata																																																																															
TERT	7015	MSKCC	GRCh37	5	1282547	1282547	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	36	332	0	ENST00000310581.5:c.1766T>G	p.Ile589Ser	p.I589S	ENST00000310581	NM_198253.2	589	aTc/aGc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56176913	56176913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	56	251	1	ENST00000399503.3:c.2183C>T	p.Ser728Phe	p.S728F	ENST00000399503	NM_005921.1	728	tCc/tTc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591085	67591085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	18	178	0	ENST00000274335.5:c.1678G>T	p.Asp560Tyr	p.D560Y	ENST00000274335		560	Gac/Tac																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591303	67591303	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	20	209	0	ENST00000274335.5:c.1801G>T	p.Glu601Ter	p.E601*	ENST00000274335		601	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112151211	112151211	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs201093383		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	84	304	0	ENST00000257430.4:c.854A>G	p.Asp285Gly	p.D285G	ENST00000257430	NM_000038.5	285	gAc/gGc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	68	232	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	51	204	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112176873	112176873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	17	269	0	ENST00000257430.4:c.5582C>A	p.Ser1861Tyr	p.S1861Y	ENST00000257430	NM_000038.5	1861	tCt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112179452	112179452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	74	303	0	ENST00000257430.4:c.8161C>T	p.Arg2721Cys	p.R2721C	ENST00000257430	NM_000038.5	2721	Cgc/Tgc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931321	131931321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	28	381	0	ENST00000265335.6:c.2026G>A	p.Glu676Lys	p.E676K	ENST00000265335		676	Gaa/Aaa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515193	149515193	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	36	493	0	ENST00000261799.4:c.289G>T	p.Glu97Ter	p.E97*	ENST00000261799	NM_002609.3	97	Gaa/Taa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057663	180057663	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	78	721	0	ENST00000261937.6:c.292C>A	p.Leu98Met	p.L98M	ENST00000261937	NM_182925.4	98	Ctg/Atg																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271393	26271393	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	25	325	0	ENST00000305910.3:c.220G>T	p.Glu74Ter	p.E74*	ENST00000305910	NM_003534.2	74	Gaa/Taa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803500	32803500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	210	452	1	ENST00000374899.4:c.659G>A	p.Arg220Gln	p.R220Q	ENST00000374899	NM_018833.2	220	cGa/cAa																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288569	33288569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	33	323	1	ENST00000374542.5:c.983G>A	p.Arg328His	p.R328H	ENST00000374542	NM_001141970.1	328	cGt/cAt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120505	94120505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	54	287	0	ENST00000369303.4:c.546C>A	p.Phe182Leu	p.F182L	ENST00000369303	NM_004440.3	182	ttC/ttA																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710904	117710904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	40	301	0	ENST00000368508.3:c.1368G>T	p.Lys456Asn	p.K456N	ENST00000368508	NM_002944.2	456	aaG/aaT																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997454	149997454	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	107	405	0	ENST00000253339.5:c.2825A>G	p.Glu942Gly	p.E942G	ENST00000253339		942	gAa/gGa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023019	150023019	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	142	479	0	ENST00000253339.5:c.244C>T	p.Arg82Ter	p.R82*	ENST00000253339		82	Cga/Tga																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683734	162683734	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	38	413	0	ENST00000366898.1:c.235G>T	p.Glu79Ter	p.E79*	ENST00000366898	NM_004562.2	79	Gaa/Taa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739875	41739875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	43	308	0	ENST00000242208.4:c.98C>A	p.Pro33His	p.P33H	ENST00000242208	NM_002192.2	33	cCc/cAc																																																																															
HGF	3082	MSKCC	GRCh37	7	81350062	81350062	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs759145490		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	15	253	0	ENST00000222390.5:c.1270C>T	p.Arg424Cys	p.R424C	ENST00000222390	NM_000601.4	424	Cgt/Tgt																																																																															
MET	4233	MSKCC	GRCh37	7	116403225	116403225	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	120	437	0	ENST00000397752.3:c.2486A>C	p.Lys829Thr	p.K829T	ENST00000397752	NM_000245.2	829	aAa/aCa																																																																															
SMO	6608	MSKCC	GRCh37	7	128848686	128848686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	164	432	0	ENST00000249373.3:c.1351C>T	p.Arg451Cys	p.R451C	ENST00000249373	NM_005631.4	451	Cgc/Tgc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148506185	148506185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	39	297	0	ENST00000320356.2:c.2173G>A	p.Glu725Lys	p.E725K	ENST00000320356	NM_004456.4	725	Gaa/Aaa																																																																															
EZH2	2146	MSKCC	GRCh37	7	148526853	148526853	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	75	346	0	ENST00000320356.2:c.451A>C	p.Lys151Gln	p.K151Q	ENST00000320356	NM_004456.4	151	Aaa/Caa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980570	70980570	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	60	472	0	ENST00000276594.2:c.807C>A	p.Phe269Leu	p.F269L	ENST00000276594	NM_024504.3	269	ttC/ttA																																																																															
TEK	7010	MSKCC	GRCh37	9	27212815	27212815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	161	490	1	ENST00000380036.4:c.2797G>A	p.Ala933Thr	p.A933T	ENST00000380036	NM_000459.3	933	Gcg/Acg																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80412494	80412494	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	16	242	0	ENST00000286548.4:c.547C>T	p.Arg183Ter	p.R183*	ENST00000286548	NM_002072.3	183	Cga/Tga																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239929	98239929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	27	332	0	ENST00000331920.6:c.1403C>G	p.Ala468Gly	p.A468G	ENST00000331920	NM_000264.3	468	gCc/gGc																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128201272	128201272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	111	399	1	ENST00000265960.3:c.1463C>T	p.Ser488Leu	p.S488L	ENST00000265960	NM_001006617.1	488	tCg/tTg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135802643	135802643	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	84	290	0	ENST00000298552.3:c.155C>G	p.Thr52Ser	p.T52S	ENST00000298552	NM_001162426.1	52	aCc/aGc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034472	47034472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	17	262	0	ENST00000329236.7:c.326G>A	p.Arg109Gln	p.R109Q	ENST00000329236	NM_001204466.1	109	cGa/cAa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412029	63412029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	26	296	0	ENST00000330258.3:c.1138G>A	p.Glu380Lys	p.E380K	ENST00000330258	NM_152424.3	380	Gag/Aag																																																																															
ATRX	546	MSKCC	GRCh37	X	76907795	76907795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	61	124	0	ENST00000373344.5:c.4366G>A	p.Glu1456Lys	p.E1456K	ENST00000373344	NM_000489.3	1456	Gag/Aag																																																																															
ATRX	546	MSKCC	GRCh37	X	76953080	76953080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	25	210	0	ENST00000373344.5:c.233G>A	p.Arg78Gln	p.R78Q	ENST00000373344	NM_000489.3	78	cGa/cAa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123215244	123215244	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	45	143	0	ENST00000218089.9:c.2790G>T	p.Met930Ile	p.M930I	ENST00000218089	NM_001042749.1	930	atG/atT																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161392	55161392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	32	311	0	ENST00000257290.5:c.3223G>A	p.Asp1075Asn	p.D1075N	ENST00000257290	NM_006206.4	1075	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0036492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	222	514	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
MPL	4352	MSKCC	GRCh37	1	43804305	43804305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	180	397	0	ENST00000372470.3:c.305G>A	p.Arg102His	p.R102H	ENST00000372470	NM_005373.2	102	cGt/cAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356256	66356256	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	73	442	0	ENST00000273854.3:c.1241A>G	p.Tyr414Cys	p.Y414C	ENST00000273854	NM_004439.5	414	tAc/tGc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0036432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	20	618	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	55	550	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	103	775	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087360	27087360	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	67	545	0	ENST00000324856.7:c.1934C>A	p.Ser645Ter	p.S645*	ENST00000324856	NM_006015.4	645	tCa/tAa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715678	30715678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	44	401	0	ENST00000359013.4:c.1411G>A	p.Asp471Asn	p.D471N	ENST00000359013	NM_001024847.2	471	Gat/Aat																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363358	40363358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	54	685	1	ENST00000397332.2:c.871G>A	p.Glu291Lys	p.E291K	ENST00000397332	NM_001033082.2	291	Gaa/Aaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061211	38061240	+	inframe_deletion	In_Frame_Del	DEL	AGTAGCAGCCGTTCTCGAACATGTTGCCGG	AGTAGCAGCCGTTCTCGAACATGTTGCCGG	-			P-0035578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	121	443	0	ENST00000250448.2:c.749_778del	p.Ser250_Tyr259del	p.S250_Y259del	ENST00000250448	NM_004496.3	250	tCCGGCAACATGTTCGAGAACGGCTGCTACTtg/ttg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	128	484	0	ENST00000347630.2:c.304T>A	p.Phe102Ile	p.F102I	ENST00000347630	NM_001007230.1	102	Ttc/Atc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119582349	119582349	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0035578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	308	347	0	ENST00000316626.5:c.1052C>G	p.Ser351Ter	p.S351*	ENST00000316626		351	tCa/tGa																																																																															
CD274	29126	MSKCC	GRCh37	9	5457181	5457181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	15	336	0	ENST00000381577.3:c.155C>T	p.Ala52Val	p.A52V	ENST00000381577	NM_014143.3	52	gCa/gTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1222983	1222983	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs398123406		P-0036200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	191	436	0	ENST00000326873.7:c.921-1G>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																																
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	300	624	0	ENST00000269305.4:c.817C>G	p.Arg273Gly	p.R273G	ENST00000269305	NM_001126112.2	273	Cgt/Ggt																																																																															
ALK	238	MSKCC	GRCh37	2	29606708	29606708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	174	503	0	ENST00000389048.3:c.1172G>T	p.Gly391Val	p.G391V	ENST00000389048	NM_004304.4	391	gGa/gTa																																																																															
TET1	80312	MSKCC	GRCh37	10	70332595	70332595	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	217	531	0	ENST00000373644.4:c.500C>G	p.Pro167Arg	p.P167R	ENST00000373644	NM_030625.2	167	cCt/cGt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881118	37881118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	343	615	1	ENST00000269571.5:c.2447G>A	p.Arg816His	p.R816H	ENST00000269571		816	cGc/cAc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533484	63533484	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	306	625	0	ENST00000307078.5:c.1670G>T	p.Ser557Ile	p.S557I	ENST00000307078	NM_004655.3	557	aGc/aTc																																																																															
CENPA	1058	MSKCC	GRCh37	2	27009117	27009118	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0036200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	45	128	1	ENST00000335756.4:c.53_54delinsAA	p.Pro18Gln	p.P18Q	ENST00000335756	NM_001809.3	18	cCG/cAA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197780	66197780	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	192	470	0	ENST00000273854.3:c.2919G>T	p.Trp973Cys	p.W973C	ENST00000273854	NM_004439.5	973	tgG/tgT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467538	66467539	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0036200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	133	374	0	ENST00000273854.3:c.730_731delinsAA	p.Pro244Asn	p.P244N	ENST00000273854	NM_004439.5	244	CCt/AAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532656	187532656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	36	502	0	ENST00000441802.2:c.9737G>A	p.Gly3246Glu	p.G3246E	ENST00000441802	NM_005245.3	3246	gGa/gAa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021776	69021776	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	214	538	1	ENST00000288368.4:c.3064A>T	p.Thr1022Ser	p.T1022S	ENST00000288368	NM_024870.2	1022	Acc/Tcc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101904830	101904830	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	33	377	0	ENST00000374994.4:c.818G>A	p.Trp273Ter	p.W273*	ENST00000374994	NM_004612.2	273	tGg/tAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0036206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	69	368	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089766	27089767	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	97	366	0	ENST00000324856.7:c.2723dup	p.Gln909ProfsTer27	p.Q909Pfs*27	ENST00000324856	NM_006015.4	908	atc/aTtc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117411	115117412	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	110	368	0	ENST00000257566.3:c.762dup	p.Val255CysfsTer5	p.V255Cfs*5	ENST00000257566	NM_016569.3	254	-/T																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645874	67645874	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	113	441	0	ENST00000264010.4:c.802T>A	p.Cys268Ser	p.C268S	ENST00000264010	NM_006565.3	268	Tgt/Agt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15995348	15995349	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	65	385	0	ENST00000268712.3:c.2844dup	p.Pro949ThrfsTer17	p.P949Tfs*17	ENST00000268712	NM_006311.3	948	-/A																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56167736	56167736	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0036206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	80	329	0	ENST00000399503.3:c.1302-1G>A		p.X434_splice	ENST00000399503	NM_005921.1	434																																																																																
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0036207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	334	550	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0036207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	28	228	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
POLE	5426	MSKCC	GRCh37	12	133250211	133250211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	261	473	0	ENST00000320574.5:c.1309G>A	p.Val437Met	p.V437M	ENST00000320574	NM_006231.2	437	Gtg/Atg																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62292679	62292679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1472	85	457	0	ENST00000508582.2:c.131C>T	p.Thr44Met	p.T44M	ENST00000508582		44	aCg/aTg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749407	43749408	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	125	345	0	ENST00000382044.4:c.1398dup	p.Ile467TyrfsTer12	p.I467Yfs*12	ENST00000382044	NM_001141980.1	466	-/T																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448495	89448495	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	147	304	0	ENST00000336596.2:c.1459C>G	p.Leu487Val	p.L487V	ENST00000336596	NM_005233.5	487	Ctg/Gtg																																																																															
APC	324	MSKCC	GRCh37	5	112174867	112174868	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0036207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	130	264	0	ENST00000257430.4:c.3577_3578del	p.Gln1193ValfsTer14	p.Q1193Vfs*14	ENST00000257430	NM_000038.5	1192	aaACag/aaag																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437848	52437848	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	123	656	2	ENST00000460680.1:c.1313C>A	p.Ser438Ter	p.S438*	ENST00000460680	NM_004656.3	438	tCa/tAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	250	578	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0036243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	165	557	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0036243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	254	545	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
CCND1	595	MSKCC	GRCh37	11	69466019	69466019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	62	496	0	ENST00000227507.2:c.857C>A	p.Thr286Lys	p.T286K	ENST00000227507	NM_053056.2	286	aCa/aAa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193091424	193091424	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	55	359	0	ENST00000367435.3:c.94T>G	p.Trp32Gly	p.W32G	ENST00000367435	NM_024529.4	32	Tgg/Ggg																																																																															
NF1	4763	MSKCC	GRCh37	17	29483072	29483072	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	54	405	0	ENST00000358273.4:c.132C>G	p.Ile44Met	p.I44M	ENST00000358273	NM_001042492.2	44	atC/atG																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341888	8341888	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	198	494	1	ENST00000356435.5:c.4752T>A	p.His1584Gln	p.H1584Q	ENST00000356435		1584	caT/caA																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53244013	53244013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	69	423	0	ENST00000375401.3:c.980G>T	p.Cys327Phe	p.C327F	ENST00000375401	NM_004187.3	327	tGc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	133	482	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584560	48584560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	128	549	0	ENST00000342988.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000342988	NM_005359.5	245	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	129	658	0	ENST00000269305.4:c.538G>T	p.Glu180Ter	p.E180*	ENST00000269305	NM_001126112.2	180	Gag/Tag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941889	71941889	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	150	692	0	ENST00000298229.2:c.1247C>G	p.Ser416Cys	p.S416C	ENST00000298229	NM_001567.3	416	tCc/tGc																																																																															
ATM	472	MSKCC	GRCh37	11	108121480	108121481	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0036244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	83	414	0	ENST00000278616.4:c.1290_1291del	p.Cys430Ter	p.C430*	ENST00000278616	NM_000051.3	430	TGt/t																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066749	30066749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	134	560	0	ENST00000331968.5:c.2382G>T	p.Gln794His	p.Q794H	ENST00000331968	NM_002742.2	794	caG/caT																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472422	88472422	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0036244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	86	474	0	ENST00000360948.2:c.2133G>T	p.Arg711Ser	p.R711S	ENST00000360948	NM_001012338.2	711	agG/agT																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59934578	59934578	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	85	363	0	ENST00000259008.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000259008	NM_032043.2	74	Gag/Cag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25990511	25990511	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	110	573	0	ENST00000435504.4:c.716A>C	p.Glu239Ala	p.E239A	ENST00000435504		239	gAa/gCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630495	187630495	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	154	707	1	ENST00000441802.2:c.487G>T	p.Ala163Ser	p.A163S	ENST00000441802	NM_005245.3	163	Gct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	147	603	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507384	8507384	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	35	446	0	ENST00000356435.5:c.1594A>G	p.Ile532Val	p.I532V	ENST00000356435		532	Att/Gtt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0036401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	503	437	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0036401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	231	801	2	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156841505	156841505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	82	709	0	ENST00000524377.1:c.808G>T	p.Asp270Tyr	p.D270Y	ENST00000524377	NM_002529.3	270	Gat/Tat																																																																															
CDH1	999	MSKCC	GRCh37	16	68863677	68863677	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	114	392	0	ENST00000261769.5:c.2416G>T	p.Glu806Ter	p.E806*	ENST00000261769	NM_004360.3	806	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0036402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	101	678	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151876936	151876936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	39	299	0	ENST00000262189.6:c.7425G>A	p.Met2475Ile	p.M2475I	ENST00000262189	NM_170606.2	2475	atG/atA																																																																															
FLT3	2322	MSKCC	GRCh37	13	28599030	28599030	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	54	652	0	ENST00000241453.7:c.2258C>A	p.Ser753Ter	p.S753*	ENST00000241453	NM_004119.2	753	tCa/tAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828122	72828122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	80	799	1	ENST00000268489.5:c.8459C>T	p.Ser2820Leu	p.S2820L	ENST00000268489	NM_006885.3	2820	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	385	605	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																															
APC	324	MSKCC	GRCh37	5	112175536	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	82	327	0	ENST00000257430.4:c.4245del	p.Ser1415ArgfsTer4	p.S1415Rfs*4	ENST00000257430	NM_000038.5	1415	agT/ag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857020	9857020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	41	249	0	ENST00000330684.3:c.4381G>A	p.Glu1461Lys	p.E1461K	ENST00000330684	NM_001134407.1	1461	Gaa/Aaa																																																																															
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs199469669		P-0036407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	469	249	0	ENST00000374080.3:c.130G>C	p.Gly44Arg	p.G44R	ENST00000374080		44	Ggt/Cgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039344	47039344	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	705	352	0	ENST00000329236.7:c.736T>G	p.Tyr246Asp	p.Y246D	ENST00000329236	NM_001204466.1	246	Tac/Gac																																																																															
KIT	3815	MSKCC	GRCh37	4	55564575	55564575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	186	521	1	ENST00000288135.5:c.463C>T	p.Pro155Ser	p.P155S	ENST00000288135	NM_000222.2	155	Cct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	62	598	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0036423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	157	814	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37680932	37680932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	75	489	1	ENST00000447079.4:c.3101C>T	p.Pro1034Leu	p.P1034L	ENST00000447079	NM_015083.1	1034	cCc/cTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11094856	11094857	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1094	148	991	0	ENST00000344626.4:c.31dup	p.Thr11AsnfsTer21	p.T11Nfs*21	ENST00000344626	NM_003072.3	10	gga/ggAa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727454	66727454	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	14	524	0	ENST00000307102.5:c.170A>C	p.Lys57Thr	p.K57T	ENST00000307102	NM_002755.3	57	aAg/aCg																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156729	20156729	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	300	509	0	ENST00000379607.5:c.28A>G	p.Lys10Glu	p.K10E	ENST00000379607	NM_001412.3	10	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0036439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	93	723	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711874	89711874	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0036439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	39	457	0	ENST00000371953.3:c.493-1G>A		p.X165_splice	ENST00000371953	NM_000314.4	165																																																																																
ARAF	369	MSKCC	GRCh37	X	47428265	47428265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	29	357	0	ENST00000377045.4:c.1225G>A	p.Val409Met	p.V409M	ENST00000377045	NM_001654.4	409	Gtg/Atg																																																																															
RET	5979	MSKCC	GRCh37	10	43609967	43609967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	95	870	0	ENST00000355710.3:c.1919C>T	p.Ala640Val	p.A640V	ENST00000355710	NM_020975.4	640	gCc/gTc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894991	101894991	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	43	344	0	ENST00000374994.4:c.544T>A	p.Tyr182Asn	p.Y182N	ENST00000374994	NM_004612.2	182	Tat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0036443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	76	630	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0036443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	83	630	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767326		P-0036443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	58	391	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578476	7578476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	285	732	0	ENST00000269305.4:c.454C>T	p.Pro152Ser	p.P152S	ENST00000269305	NM_001126112.2	152	Ccg/Tcg																																																																															
KDR	3791	MSKCC	GRCh37	4	55961013	55961013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	236	602	0	ENST00000263923.4:c.2927G>T	p.Gly976Val	p.G976V	ENST00000263923	NM_002253.2	976	gGa/gTa																																																																															
APC	324	MSKCC	GRCh37	5	112175486	112175487	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	158	475	0	ENST00000257430.4:c.4196dup	p.Ser1400PhefsTer9	p.S1400Ffs*9	ENST00000257430	NM_000038.5	1399	cgt/cGgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0036445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	256	390	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	263	690	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573150	64573150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	75	442	0	ENST00000337652.1:c.1157G>A	p.Ser386Asn	p.S386N	ENST00000337652	NM_130803.2	386	aGc/aAc																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22123507	22123507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	139	434	2	ENST00000215832.6:c.1069G>A	p.Gly357Arg	p.G357R	ENST00000215832	NM_002745.4	357	Gga/Aga																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807569	1807569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	122	607	1	ENST00000260795.2:c.1738G>A	p.Asp580Asn	p.D580N	ENST00000260795		580	Gac/Aac																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912175	29912175	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0036445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	57	208	0	ENST00000376809.5:c.895+1G>T		p.X299_splice	ENST00000376809	NM_002116.7	299																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	105	463	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578217	7578217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	190	558	1	ENST00000269305.4:c.632C>T	p.Thr211Ile	p.T211I	ENST00000269305	NM_001126112.2	211	aCt/aTt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0036450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	101	396	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
APC	324	MSKCC	GRCh37	5	112175346	112175356	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAATTTTCT	TTGAATTTTCT	-			P-0036450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	129	256	0	ENST00000257430.4:c.4056_4066del	p.Glu1353ArgfsTer18	p.E1353Rfs*18	ENST00000257430	NM_000038.5	1352	gTTGAATTTTCT/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	47	380	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0036451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	42	504	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45394820	45394820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	14	234	1	ENST00000262160.6:c.529C>T	p.Pro177Ser	p.P177S	ENST00000262160	NM_005901.5	177	Cca/Tca																																																																															
CDC73	79577	MSKCC	GRCh37	1	193172923	193172923	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0036451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	18	209	0	ENST00000367435.3:c.973-2A>T		p.X325_splice	ENST00000367435	NM_024529.4	325																																																																																
PIK3C2G	5288	MSKCC	GRCh37	12	18719888	18719888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	31	260	0	ENST00000266497.5:c.3785C>A	p.Pro1262His	p.P1262H	ENST00000266497		1262	cCt/cAt																																																																															
EP300	2033	MSKCC	GRCh37	22	41525896	41525896	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0036451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	17	305	0	ENST00000263253.7:c.1171G>T	p.Ala391Ser	p.A391S	ENST00000263253	NM_001429.3	391	Gca/Tca																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157517297	157517297	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0036451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	19	280	0	ENST00000346085.5:c.3863-2A>T		p.X1288_splice	ENST00000346085	NM_020732.3	1288																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	87	445	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579472	7579473	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0036454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	56	645	0	ENST00000269305.4:c.214_215delinsG	p.Pro72AlafsTer51	p.P72Afs*51	ENST00000269305	NM_001126112.2	72	CCc/Gc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118360862	118360862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	26	383	0	ENST00000534358.1:c.4594C>T	p.Arg1532Cys	p.R1532C	ENST00000534358	NM_005933.3	1532	Cgc/Tgc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56348536	56348536	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	42	328	0	ENST00000348428.3:c.344A>G	p.His115Arg	p.H115R	ENST00000348428	NM_006785.3	115	cAc/cGc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143067004	143067004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	29	338	0	ENST00000262992.4:c.1709C>T	p.Ser570Phe	p.S570F	ENST00000262992	NM_001101669.1	570	tCt/tTt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187405	32187405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	60	611	0	ENST00000375023.3:c.1474G>A	p.Asp492Asn	p.D492N	ENST00000375023	NM_004557.3	492	Gac/Aac																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289629	33289629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	39	538	0	ENST00000374542.5:c.74C>T	p.Ser25Phe	p.S25F	ENST00000374542	NM_001141970.1	25	tCc/tTc																																																																															
CDK6	1021	MSKCC	GRCh37	7	92462476	92462476	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	61	478	0	ENST00000265734.4:c.162G>T	p.Met54Ile	p.M54I	ENST00000265734	NM_001259.6	54	atG/atT																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401426	139401426	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0036454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	53	539	0	ENST00000277541.6:c.3644-1G>T		p.X1215_splice	ENST00000277541	NM_017617.3	1215																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53227821	53227821	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0036454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	66	297	0	ENST00000375401.3:c.2369-2A>T		p.X790_splice	ENST00000375401	NM_004187.3	790																																																																																
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0036459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	11	439	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0036459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	140	392	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0036459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	59	502	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0036459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	26	449	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951964	178951964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	60	496	0	ENST00000263967.3:c.3019G>C	p.Gly1007Arg	p.G1007R	ENST00000263967	NM_006218.2	1007	Ggc/Cgc																																																																															
ATM	472	MSKCC	GRCh37	11	108142001	108142001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	92	387	1	ENST00000278616.4:c.2945G>A	p.Arg982His	p.R982H	ENST00000278616	NM_000051.3	982	cGt/cAt																																																																															
SRC	6714	MSKCC	GRCh37	20	36012597	36012597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	46	309	0	ENST00000358208.4:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000358208		14	cGg/cAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266051	41266631	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	AGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCA	AGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCA	-			P-0036459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	90	244	0	ENST00000349496.5:c.51_431del		p.X17_splice	ENST00000349496	NM_001904.3	17	ccAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAa/cca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	260	619	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0036480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	34	288	1	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287446	46287446	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	19	414	0	ENST00000334344.6:c.5305C>T	p.Arg1769Ter	p.R1769*	ENST00000334344	NM_152641.2	1769	Cga/Tga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532438	63532438	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	49	532	0	ENST00000307078.5:c.2141G>A	p.Arg714Gln	p.R714Q	ENST00000307078	NM_004655.3	714	cGg/cAg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939876	71939876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	80	759	0	ENST00000298229.2:c.503C>T	p.Ala168Val	p.A168V	ENST00000298229	NM_001567.3	168	gCt/gTt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343892	118343892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	90	491	0	ENST00000534358.1:c.2018C>T	p.Ala673Val	p.A673V	ENST00000534358	NM_005933.3	673	gCt/gTt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246553	41246553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	57	767	1	ENST00000357654.3:c.995G>A	p.Arg332Gln	p.R332Q	ENST00000357654	NM_007294.3	332	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221666	36221666	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	45	723	0	ENST00000222270.7:c.5335C>T	p.Arg1779Ter	p.R1779*	ENST00000222270	NM_014727.1	1779	Cga/Tga																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1977089	1977089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	69	741	0	ENST00000382891.5:c.3583G>A	p.Ala1195Thr	p.A1195T	ENST00000382891	NM_133335.3	1195	Gcc/Acc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117866591	117866591	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	19	563	0	ENST00000297338.2:c.1054G>T	p.Asp352Tyr	p.D352Y	ENST00000297338	NM_006265.2	352	Gat/Tat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0036532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	83	453	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123788	11123788	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	51	494	0	ENST00000344626.4:c.2438C>T	p.Ser813Leu	p.S813L	ENST00000344626	NM_003072.3	813	tCa/tTa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589557	67589562	+	inframe_deletion	In_Frame_Del	DEL	TAATAT	TAATAT	-			P-0036532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	14	140	0	ENST00000274335.5:c.1321_1326del	p.Asn441_Ile442del	p.N441_I442del	ENST00000274335		440	gaTAATATt/gat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	53	506	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971170	21971170	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	40	309	0	ENST00000304494.5:c.188T>A	p.Leu63Gln	p.L63Q	ENST00000304494	NM_000077.4	63	cTg/cAg																																																																															
POLE	5426	MSKCC	GRCh37	12	133233744	133233744	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	60	495	0	ENST00000320574.5:c.3560T>G	p.Phe1187Cys	p.F1187C	ENST00000320574	NM_006231.2	1187	tTc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578374	7578375	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	55	594	0	ENST00000269305.4:c.555dup	p.Asp186ArgfsTer23	p.D186Rfs*23	ENST00000269305	NM_001126112.2	185	-/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	143	451	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	47	223	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481882	56481882	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	142	609	0	ENST00000267101.3:c.810C>G	p.Phe270Leu	p.F270L	ENST00000267101	NM_001982.3	270	ttC/ttG																																																																															
SDHA	6389	MSKCC	GRCh37	5	225669	225669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	145	687	1	ENST00000264932.6:c.448G>A	p.Val150Met	p.V150M	ENST00000264932	NM_004168.2	150	Gtg/Atg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711367	114711367	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0036534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	66	136	0	ENST00000543371.1:c.381+1G>C		p.X127_splice	ENST00000543371	NM_001198531.1	127																																																																																
TOP1	7150	MSKCC	GRCh37	20	39726924	39726924	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	37	203	0	ENST00000361337.2:c.922T>C	p.Tyr308His	p.Y308H	ENST00000361337	NM_003286.2	308	Tat/Cat																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747836	41747836	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	83	328	0	ENST00000226382.2:c.933C>A	p.Ser311Arg	p.S311R	ENST00000226382	NM_003924.3	311	agC/agA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0036377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	79	505	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
NF1	4763	MSKCC	GRCh37	17	29684323	29684323	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	40	372	0	ENST00000358273.4:c.7906C>T	p.Gln2636Ter	p.Q2636*	ENST00000358273	NM_001042492.2	2636	Caa/Taa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870927	12870929	+	frameshift_variant	Frame_Shift_Del	DEL	ATG	ATG	CT			P-0036377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	34	197	0	ENST00000228872.4:c.154_156delinsCT	p.Met52LeufsTer19	p.M52Lfs*19	ENST00000228872	NM_004064.3	52	ATG/CT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874067	151874068	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	62	478	0	ENST00000262189.6:c.8470dup	p.Thr2824AsnfsTer9	p.T2824Nfs*9	ENST00000262189	NM_170606.2	2824	acg/aAcg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	53	333	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	27	459	0	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	238	683	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	96	469	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	46	350	4	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	75	390	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
WT1	7490	MSKCC	GRCh37	11	32417886	32417886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	36	498	2	ENST00000332351.3:c.1166G>A	p.Arg389His	p.R389H	ENST00000332351	NM_024426.4	389	cGc/cAc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	142	795	3	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	140	510	5	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	78	548	1	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154241	2154242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	79	681	1	ENST00000434045.2:c.686dup	p.Glu230ArgfsTer50	p.E230Rfs*50	ENST00000434045	NM_001127598.1	229	cca/ccCa																																																																															
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	82	429	1	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																															
ATRX	546	MSKCC	GRCh37	X	76938776	76938776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	90	668	1	ENST00000373344.5:c.1972C>T	p.Arg658Cys	p.R658C	ENST00000373344	NM_000489.3	658	Cgt/Tgt																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225408	26225408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	35	172	0	ENST00000360408.1:c.26G>A	p.Arg9His	p.R9H	ENST00000360408	NM_003532.2	9	cGt/cAt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120199	70120199	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	106	597	0	ENST00000245479.2:c.1201C>T	p.Gln401Ter	p.Q401*	ENST00000245479	NM_000346.3	401	Cag/Tag																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656846	45656846	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	96	576	0	ENST00000407780.3:c.310A>G	p.Thr104Ala	p.T104A	ENST00000407780	NM_001283052.1	104	Acc/Gcc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212259	5212259	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	86	633	0	ENST00000357368.4:c.4772C>T	p.Ala1591Val	p.A1591V	ENST00000357368	NM_002850.3	1591	gCc/gTc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5243963	5243963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	109	576	0	ENST00000357368.4:c.1519G>A	p.Val507Ile	p.V507I	ENST00000357368	NM_002850.3	507	Gtc/Atc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	76	401	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
AXIN1	8312	MSKCC	GRCh37	16	359972	359972	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	179	600	2	ENST00000262320.3:c.1116+1G>A		p.X372_splice	ENST00000262320	NM_003502.3	372																																																																																
KDM5A	5927	MSKCC	GRCh37	12	432249	432249	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	65	337	0	ENST00000399788.2:c.2274del	p.Asp759IlefsTer2	p.D759Ifs*2	ENST00000399788	NM_001042603.1	758	aaA/aa																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428251	33428251	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150134822		P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	91	532	1	ENST00000335858.7:c.536G>A	p.Arg179His	p.R179H	ENST00000335858	NM_133629.2	179	cGc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70360679	70360680	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	18	168	0	ENST00000374080.3:c.6256_6258dup	p.Gln2086dup	p.Q2086dup	ENST00000374080		2086	cgg/cgGCAg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16237614	16237614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	51	408	0	ENST00000375759.3:c.1061G>A	p.Gly354Asp	p.G354D	ENST00000375759	NM_015001.2	354	gGc/gAc																																																																															
ATM	472	MSKCC	GRCh37	11	108115748	108115748	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	15	199	1	ENST00000278616.4:c.900del	p.Gly301ValfsTer19	p.G301Vfs*19	ENST00000278616	NM_000051.3	299	gAa/ga																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246312	46246312	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	33	361	0	ENST00000334344.6:c.4406T>G	p.Val1469Gly	p.V1469G	ENST00000334344	NM_152641.2	1469	gTc/gGc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90630484	90630484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	90	575	0	ENST00000330062.3:c.827C>T	p.Thr276Ile	p.T276I	ENST00000330062	NM_002168.2	276	aCc/aTc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89354977	89354977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	149	669	0	ENST00000301030.4:c.703G>A	p.Asp235Asn	p.D235N	ENST00000301030	NM_001256183.1	235	Gac/Aac																																																																															
AURKB	9212	MSKCC	GRCh37	17	8113500	8113500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	99	674	0	ENST00000585124.1:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000585124	NM_004217.3	15	Cag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29546030	29546030	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	63	291	0	ENST00000358273.4:c.1535G>T	p.Arg512Ile	p.R512I	ENST00000358273	NM_001042492.2	512	aGa/aTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29664399	29664399	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	67	441	0	ENST00000358273.4:c.6441A>C	p.Gln2147His	p.Q2147H	ENST00000358273	NM_001042492.2	2147	caA/caC																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435108	56435108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	31	657	0	ENST00000407977.2:c.2029G>A	p.Ala677Thr	p.A677T	ENST00000407977		677	Gct/Act																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39550304	39550304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	31	219	0	ENST00000262039.4:c.415G>A	p.Gly139Arg	p.G139R	ENST00000262039	NM_002647.2	139	Ggg/Agg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2213574	2213576	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	127	761	0	ENST00000398665.3:c.1597_1599del	p.Leu533del	p.L533del	ENST00000398665	NM_032482.2	532	CTC/-																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10260574	10260575	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	72	552	0	ENST00000340748.4:c.2287_2288del	p.Val763LeufsTer6	p.V763Lfs*6	ENST00000340748		763	GTc/c																																																																															
BBC3	27113	MSKCC	GRCh37	19	47724985	47724985	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	116	807	0	ENST00000449228.1:c.759C>A	p.Ser253Arg	p.S253R	ENST00000449228	NM_001127240.2	253	agC/agA																																																																															
BARD1	580	MSKCC	GRCh37	2	215645634	215645634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	60	620	0	ENST00000260947.4:c.964C>T	p.Arg322Cys	p.R322C	ENST00000260947	NM_000465.2	322	Cgt/Tgt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661341	227661341	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	103	675	0	ENST00000305123.5:c.2114delG	p.Gly705AlafsTer29	p.G705Afs*29	ENST00000305123	NM_005544.2	705	gGc/gc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662351	227662352	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	93	534	0	ENST00000305123.5:c.1103dup	p.Leu369AlafsTer28	p.L369Afs*28	ENST00000305123	NM_005544.2	368	ccg/ccCg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40747062	40747062	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	86	618	0	ENST00000373198.4:c.3020del	p.Asn1007ThrfsTer8	p.N1007Tfs*8	ENST00000373198	NM_133170.3	1007	aAc/ac																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526792	31526792	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	101	613	0	ENST00000344624.3:c.248del	p.Pro83HisfsTer25	p.P83Hfs*25	ENST00000344624		83	cCa/ca																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911164	29911164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	64	318	2	ENST00000376809.5:c.463C>A	p.Arg155Ser	p.R155S	ENST00000376809	NM_002116.7	155	Cgc/Agc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911183	29911183	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	31	147	0	ENST00000376809.5:c.482A>C	p.Asp161Ala	p.D161A	ENST00000376809	NM_002116.7	161	gAc/gCc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324534	31324534	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	50	864	0	ENST00000412585.2:c.274A>G	p.Lys92Glu	p.K92E	ENST00000412585	NM_005514.6	92	Aag/Gag																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288359	33288359	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	57	364	0	ENST00000374542.5:c.1049C>A	p.Pro350His	p.P350H	ENST00000374542	NM_001141970.1	350	cCt/cAt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93969107	93969107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	46	325	0	ENST00000369303.4:c.1889C>T	p.Ala630Val	p.A630V	ENST00000369303	NM_004440.3	630	gCc/gTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55233129	55233129	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	68	435	0	ENST00000275493.2:c.1879G>T	p.Gly627Ter	p.G627*	ENST00000275493	NM_005228.3	627	Gga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273148	55273148	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	125	612	2	ENST00000275493.2:c.3471G>A	p.Trp1157Ter	p.W1157*	ENST00000275493	NM_005228.3	1157	tgG/tgA																																																																															
BRAF	673	MSKCC	GRCh37	7	140476752	140476752	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	58	441	0	ENST00000288602.6:c.1654A>C	p.Lys552Gln	p.K552Q	ENST00000288602	NM_004333.4	552	Aaa/Caa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873309	151873309	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145953124		P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	43	340	1	ENST00000262189.6:c.9229C>T	p.Arg3077Cys	p.R3077C	ENST00000262189	NM_170606.2	3077	Cgt/Tgt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101908835	101908835	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	24	569	0	ENST00000374994.4:c.1199A>G	p.Asp400Gly	p.D400G	ENST00000374994	NM_004612.2	400	gAc/gGc																																																																															
KIT	3815	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	40	338	0	ENST00000288135.5:c.1676T>C	p.Val559Ala	p.V559A	ENST00000288135	NM_000222.2	559	gTt/gCt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549752	187549752	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	181	357	0	ENST00000441802.2:c.4489A>G	p.Arg1497Gly	p.R1497G	ENST00000441802	NM_005245.3	1497	Aga/Gga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	257	535	0	ENST00000269305.4:c.643A>G	p.Ser215Gly	p.S215G	ENST00000269305	NM_001126112.2	215	Agt/Ggt																																																																															
KIT	3815	MSKCC	GRCh37	4	55599320	55599320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	14	463	0	ENST00000288135.5:c.2446G>T	p.Asp816Tyr	p.D816Y	ENST00000288135	NM_000222.2	816	Gac/Tac																																																																															
TET2	54790	MSKCC	GRCh37	4	106156439	106156439	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	107	252	0	ENST00000380013.4:c.1342del	p.Glu448LysfsTer2	p.E448Kfs*2	ENST00000380013	NM_001127208.2	447	aGg/ag																																																																															
PGR	5241	MSKCC	GRCh37	11	100998386	100998386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	18	91	0	ENST00000325455.5:c.1416G>T	p.Gln472His	p.Q472H	ENST00000325455	NM_001202474.3	472	caG/caT																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216782	7216783	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	96	338	0	ENST00000380728.2:c.640dup	p.Ser214PhefsTer47	p.S214Ffs*47	ENST00000380728		214	tcg/tTcg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39542515	39542515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	39	286	0	ENST00000262039.4:c.319G>A	p.Ala107Thr	p.A107T	ENST00000262039	NM_002647.2	107	Gcc/Acc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176666861	176666861	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	39	225	1	ENST00000439151.2:c.4297A>C	p.Lys1433Gln	p.K1433Q	ENST00000439151	NM_022455.4	1433	Aaa/Caa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399341	139399342	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			P-0036052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	78	643	0	ENST00000277541.6:c.4799_4801dup	p.Leu1600dup	p.L1600dup	ENST00000277541	NM_017617.3	1600	cac/cTGCac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0036157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	49	459	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0036157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	32	697	3	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	24	547	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	53	663	0	ENST00000269305.4:c.713G>C	p.Cys238Ser	p.C238S	ENST00000269305	NM_001126112.2	238	tGt/tCt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974737	21974838	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	CGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGC	CGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGC	-			P-0036158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	22	302	0	ENST00000304494.5:c.-12_90del		p.*4*	ENST00000304494	NM_000077.4	4																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178947827	178947827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	40	425	0	ENST00000263967.3:c.2702G>T	p.Cys901Phe	p.C901F	ENST00000263967	NM_006218.2	901	tGt/tTt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	53	537	0	ENST00000347630.2:c.304T>A	p.Phe102Ile	p.F102I	ENST00000347630	NM_001007230.1	102	Ttc/Atc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753681	42753681	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	56	745	0	ENST00000222329.4:c.583G>T	p.Glu195Ter	p.E195*	ENST00000222329	NM_006494.2	195	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0036164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	84	500	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692851	89692851	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	52	194	0	ENST00000371953.3:c.335T>G	p.Leu112Arg	p.L112R	ENST00000371953	NM_000314.4	112	cTa/cGa																																																																															
ATM	472	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0036166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	144	524	1	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0036166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	209	407	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0036166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	59	301	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0036166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	269	607	1	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
UPF1	5976	MSKCC	GRCh37	19	18967059	18967059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	160	747	0	ENST00000262803.5:c.1774G>A	p.Glu592Lys	p.E592K	ENST00000262803	NM_002911.3	592	Gag/Aag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376920	118376920	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782425634		P-0036166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	233	459	1	ENST00000534358.1:c.10313C>T	p.Thr3438Met	p.T3438M	ENST00000534358	NM_005933.3	3438	aCg/aTg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71090632	71090632	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	236	614	0	ENST00000318789.4:c.716A>G	p.His239Arg	p.H239R	ENST00000318789	NM_032682.5	239	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	87	921	0	ENST00000269305.4:c.395A>C	p.Lys132Thr	p.K132T	ENST00000269305	NM_001126112.2	132	aAg/aCg																																																																															
TET2	54790	MSKCC	GRCh37	4	106156381	106156381	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	29	470	0	ENST00000380013.4:c.1282G>C	p.Gly428Arg	p.G428R	ENST00000380013	NM_001127208.2	428	Ggt/Cgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241614	55241614	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	66	930	0	ENST00000275493.2:c.2062C>T	p.Leu688Phe	p.L688F	ENST00000275493	NM_005228.3	688	Ctt/Ttt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737950	145738056	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCAGGGAAAAAGGGACATGTGGCCAACAGCCCTGATTCTCCAACCTCGTCTCCAACTGGGCAGGGCGTGCTTACCTGTGGGCCAGGGCCTGGAGCTGGGCAGGGCC	CCCAGGGAAAAAGGGACATGTGGCCAACAGCCCTGATTCTCCAACCTCGTCTCCAACTGGGCAGGGCGTGCTTACCTGTGGGCCAGGGCCTGGAGCTGGGCAGGGCC	-			P-0036173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	56	807	0	ENST00000428558.2:c.2854_2886-6del		p.X952_splice	ENST00000428558	NM_004260.3	952																																																																																
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0036176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	225	892	5	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
BRAF	673	MSKCC	GRCh37	7	140434522	140434522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	194	474	0	ENST00000288602.6:c.2176C>T	p.Arg726Cys	p.R726C	ENST00000288602	NM_004333.4	726	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	157	635	0	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42053981	42053981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	34	341	0	ENST00000219905.7:c.7443G>C	p.Leu2481Phe	p.L2481F	ENST00000219905	NM_001164273.1	2481	ttG/ttC																																																																															
JAK1	3716	MSKCC	GRCh37	1	65332780	65333214	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTGTTAAATTCCTTTAGGAAATCCTTGAAAACATTATTTATCCGCATCCTGGTGAGAAGGTTCCTCTGTCTGATGGACTTATTCAATGTTTCTGGAATATATCGCTTGTAGCTAAAAGACAGTAGAAAAGTACATCTCCTTTTCATGTACAGGTTAGGAGAAAATAGTTTAGAAACAAATCTAAGTCCATGAATCCACATGTTGCCAAATGGGAAAGGGAGATCTATTCCCAGAGGACGTTAGATGGAGTTAGCACTGAAGATGACCATCATAAGGAGATGCAGGTGAATAGAAACTGGGAAAGAAAAGCAAAGCACATGCTCCACAGATTTCACTGAAATGGGAATTGCTACAAGTATTGCCCAATTTTCTGGGTCACCAAGGCAGGGCATCTACATTTTTGCTTGCTAGCTTCACCATTCTTGTGCACATTA	GTTGTTAAATTCCTTTAGGAAATCCTTGAAAACATTATTTATCCGCATCCTGGTGAGAAGGTTCCTCTGTCTGATGGACTTATTCAATGTTTCTGGAATATATCGCTTGTAGCTAAAAGACAGTAGAAAAGTACATCTCCTTTTCATGTACAGGTTAGGAGAAAATAGTTTAGAAACAAATCTAAGTCCATGAATCCACATGTTGCCAAATGGGAAAGGGAGATCTATTCCCAGAGGACGTTAGATGGAGTTAGCACTGAAGATGACCATCATAAGGAGATGCAGGTGAATAGAAACTGGGAAAGAAAAGCAAAGCACATGCTCCACAGATTTCACTGAAATGGGAATTGCTACAAGTATTGCCCAATTTTCTGGGTCACCAAGGCAGGGCATCTACATTTTTGCTTGCTAGCTTCACCATTCTTGTGCACATTA	-			P-0036179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	20	516	0	ENST00000342505.4:c.648-323_759del		p.X216_splice	ENST00000342505	NM_002227.2	216																																																																																
HNF1A	6927	MSKCC	GRCh37	12	121431505	121431505	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	34	554	0	ENST00000257555.6:c.709A>C	p.Asn237His	p.N237H	ENST00000257555		237	Aat/Cat																																																																															
GNA11	2767	MSKCC	GRCh37	19	3119290	3119290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	51	745	0	ENST00000078429.4:c.822C>A	p.Asn274Lys	p.N274K	ENST00000078429	NM_002067.2	274	aaC/aaA																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716030	52716030	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	50	731	0	ENST00000322088.6:c.595G>C	p.Asp199His	p.D199H	ENST00000322088	NM_014225.5	199	Gac/Cac																																																																															
MSH2	4436	MSKCC	GRCh37	2	47693887	47693887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	46	412	1	ENST00000233146.2:c.1601G>T	p.Arg534Leu	p.R534L	ENST00000233146	NM_000251.2	534	cGt/cTt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69002831	69002831	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	37	296	0	ENST00000288368.4:c.2131G>T	p.Ala711Ser	p.A711S	ENST00000288368	NM_024870.2	711	Gct/Tct																																																																															
AR	367	MSKCC	GRCh37	X	66765757	66765757	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	65	894	0	ENST00000374690.3:c.769C>G	p.Leu257Val	p.L257V	ENST00000374690	NM_000044.3	257	Ctg/Gtg																																																																															
AR	367	MSKCC	GRCh37	X	66765919	66765919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	60	799	1	ENST00000374690.3:c.931C>A	p.Pro311Thr	p.P311T	ENST00000374690	NM_000044.3	311	Cct/Act																																																																															
AR	367	MSKCC	GRCh37	X	66766259	66766259	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	44	241	0	ENST00000374690.3:c.1271C>A	p.Ser424Tyr	p.S424Y	ENST00000374690	NM_000044.3	424	tCt/tAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0036181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	260	627	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
BLM	641	MSKCC	GRCh37	15	91352387	91352387	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	141	418	0	ENST00000355112.3:c.3772G>C	p.Glu1258Gln	p.E1258Q	ENST00000355112	NM_000057.2	1258	Gag/Cag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16097791	16097791	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	228	627	0	ENST00000268712.3:c.93C>A	p.Asn31Lys	p.N31K	ENST00000268712	NM_006311.3	31	aaC/aaA																																																																															
NF1	4763	MSKCC	GRCh37	17	29657369	29657369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	234	676	0	ENST00000358273.4:c.5665G>A	p.Glu1889Lys	p.E1889K	ENST00000358273	NM_001042492.2	1889	Gag/Aag																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792278	33792278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	207	669	2	ENST00000498907.2:c.1043G>A	p.Ser348Asn	p.S348N	ENST00000498907	NM_004364.3	348	aGc/aAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	177	470	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0036323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	114	318	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984024	2984024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	125	583	1	ENST00000396946.4:c.506C>T	p.Thr169Met	p.T169M	ENST00000396946	NM_032415.4	169	aCg/aTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411071	63411071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	247	636	0	ENST00000330258.3:c.2096G>A	p.Arg699His	p.R699H	ENST00000330258	NM_152424.3	699	cGt/cAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874751	151874751	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149388680		P-0036323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	154	393	0	ENST00000262189.6:c.7787G>A	p.Arg2596Gln	p.R2596Q	ENST00000262189	NM_170606.2	2596	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114905777	114905777	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	229	475	0	ENST00000543371.1:c.796C>T	p.Gln266Ter	p.Q266*	ENST00000543371	NM_001198531.1	266	Caa/Taa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243378	46243378	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	110	283	0	ENST00000334344.6:c.1731T>A	p.Asn577Lys	p.N577K	ENST00000334344	NM_152641.2	577	aaT/aaA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435148	49435148	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	173	464	0	ENST00000301067.7:c.6405G>T	p.Leu2135Phe	p.L2135F	ENST00000301067	NM_003482.3	2135	ttG/ttT																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46252684	46252684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	67	309	0	ENST00000371998.3:c.113G>A	p.Arg38Gln	p.R38Q	ENST00000371998		38	cGg/cAg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2972215	2972215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	231	527	1	ENST00000396946.4:c.1524G>T	p.Gln508His	p.Q508H	ENST00000396946	NM_032415.4	508	caG/caT																																																																															
HGF	3082	MSKCC	GRCh37	7	81355280	81355280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	76	409	1	ENST00000222390.5:c.1094G>A	p.Cys365Tyr	p.C365Y	ENST00000222390	NM_000601.4	365	tGt/tAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0036324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	198	674	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0036324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	381	670	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0036324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	87	260	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175193	112175193	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	90	202	0	ENST00000257430.4:c.3904delC	p.Leu1302CysfsTer3	p.L1302Cfs*3	ENST00000257430	NM_000038.5	1301	aCc/ac																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120291	70120292	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	440	934	0	ENST00000245479.2:c.1294dup	p.Tyr432LeufsTer146	p.Y432Lfs*146	ENST00000245479	NM_000346.3	431	-/T																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911491	114911491	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	79	172	0	ENST00000543371.1:c.1009C>T	p.Gln337Ter	p.Q337*	ENST00000543371	NM_001198531.1	337	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	107	542	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MYD88	4615	MSKCC	GRCh37	3	38181402	38181402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	38	433	0	ENST00000396334.3:c.415G>A	p.Glu139Lys	p.E139K	ENST00000396334	NM_002468.4	139	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	92	738	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119789	70119789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	47	572	0	ENST00000245479.2:c.791G>A	p.Arg264Lys	p.R264K	ENST00000245479	NM_000346.3	264	aGa/aAa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185190894	185190894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	56	688	0	ENST00000265026.3:c.1775G>A	p.Arg592Gln	p.R592Q	ENST00000265026	NM_004721.4	592	cGa/cAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521385	187521385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	37	551	1	ENST00000441802.2:c.11770C>T	p.Arg3924Cys	p.R3924C	ENST00000441802	NM_005245.3	3924	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874893	151874893	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	32	465	0	ENST00000262189.6:c.7645C>T	p.Gln2549Ter	p.Q2549*	ENST00000262189	NM_170606.2	2549	Cag/Tag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118368699	118368702	+	frameshift_variant	Frame_Shift_Del	DEL	AATT	AATT	-			P-0036327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	78	555	0	ENST00000534358.1:c.5713_5716del	p.Asn1905ValfsTer16	p.N1905Vfs*16	ENST00000534358	NM_005933.3	1905	AATTgt/gt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18762498	18762498	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	47	429	1	ENST00000266497.5:c.3994G>C	p.Val1332Leu	p.V1332L	ENST00000266497		1332	Gtg/Ctg																																																																															
NF1	4763	MSKCC	GRCh37	17	29585424	29585424	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	100	658	0	ENST00000358273.4:c.4236A>T	p.Arg1412Ser	p.R1412S	ENST00000358273	NM_001042492.2	1412	agA/agT																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643389	52643389	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	68	548	0	ENST00000394830.3:c.2507G>T	p.Arg836Leu	p.R836L	ENST00000394830	NM_018313.4	836	cGg/cTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256546	16256546	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	36	546	0	ENST00000375759.3:c.3811G>T	p.Glu1271Ter	p.E1271*	ENST00000375759	NM_015001.2	1271	Gaa/Taa																																																																															
PGR	5241	MSKCC	GRCh37	11	100922287	100922288	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	124	266	0	ENST00000325455.5:c.2224_2225insA	p.Leu742TyrfsTer4	p.L742Yfs*4	ENST00000325455	NM_001202474.3	742	tta/tAta																																																																															
ATM	472	MSKCC	GRCh37	11	108150308	108150308	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	37	376	0	ENST00000278616.4:c.3375G>C	p.Leu1125Phe	p.L1125F	ENST00000278616	NM_000051.3	1125	ttG/ttC																																																																															
POLE	5426	MSKCC	GRCh37	12	133241901	133241901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	173	562	0	ENST00000320574.5:c.2455G>A	p.Val819Ile	p.V819I	ENST00000320574	NM_006231.2	819	Gtc/Atc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968085	68968085	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	139	494	0	ENST00000288368.4:c.1114C>T	p.Gln372Ter	p.Q372*	ENST00000288368	NM_024870.2	372	Caa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099103	27099103	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	137	363	1	ENST00000324856.7:c.3524del	p.Pro1175HisfsTer5	p.P1175Hfs*5	ENST00000324856	NM_006015.4	1173	atC/at																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	174	446	2	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
MPL	4352	MSKCC	GRCh37	1	43812532	43812532	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	174	438	0	ENST00000372470.3:c.1235A>G	p.His412Arg	p.H412R	ENST00000372470	NM_005373.2	412	cAc/cGc																																																																															
JUN	3725	MSKCC	GRCh37	1	59248166	59248166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	36	76	0	ENST00000371222.2:c.577G>A	p.Ala193Thr	p.A193T	ENST00000371222	NM_002228.3	193	Gcc/Acc																																																																															
PARP1	142	MSKCC	GRCh37	1	226567647	226567647	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	197	578	1	ENST00000366794.5:c.1519delA	p.Ser507AlafsTer17	p.S507Afs*17	ENST00000366794	NM_001618.3	507	Agc/gc																																																																															
RET	5979	MSKCC	GRCh37	10	43609122	43609122	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	256	619	0	ENST00000355710.3:c.1878G>T	p.Gln626His	p.Q626H	ENST00000355710	NM_020975.4	626	caG/caT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342917	118342917	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	107	251	0	ENST00000534358.1:c.1043T>C	p.Val348Ala	p.V348A	ENST00000534358	NM_005933.3	348	gTc/gCc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343502	118343502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	167	356	0	ENST00000534358.1:c.1628C>T	p.Thr543Met	p.T543M	ENST00000534358	NM_005933.3	543	aCg/aTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	245	631	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118367017	118367017	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	207	453	0	ENST00000534358.1:c.5603delC	p.Pro1868GlnfsTer3	p.P1868Qfs*3	ENST00000534358	NM_005933.3	1867	Ccc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433394	49433394	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	424	661	0	ENST00000301067.7:c.8053C>T	p.Arg2685Ter	p.R2685*	ENST00000301067	NM_003482.3	2685	Cga/Tga																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	512	658	5	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112250	115112250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	86	186	0	ENST00000257566.3:c.1490C>T	p.Pro497Leu	p.P497L	ENST00000257566	NM_016569.3	497	cCc/cTc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008324	29008324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	131	367	0	ENST00000282397.4:c.547C>T	p.Arg183Cys	p.R183C	ENST00000282397	NM_002019.4	183	Cgc/Tgc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041210	29041210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	250	686	1	ENST00000282397.4:c.218G>T	p.Arg73Met	p.R73M	ENST00000282397	NM_002019.4	73	aGg/aTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103528185	103528185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	118	240	1	ENST00000355739.4:c.3493G>A	p.Ala1165Thr	p.A1165T	ENST00000355739	NM_000123.3	1165	Gcc/Acc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435333	110435333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	119	307	0	ENST00000375856.3:c.3068C>T	p.Ala1023Val	p.A1023V	ENST00000375856	NM_003749.2	1023	gCg/gTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436297	110436302	+	inframe_deletion	In_Frame_Del	DEL	CGGCGG	CGGCGG	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	81	176	0	ENST00000375856.3:c.2099_2104del	p.Ala700_Ala701del	p.A700_A701del	ENST00000375856	NM_003749.2	700	gCCGCCGtg/gtg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437436	110437436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	271	429	0	ENST00000375856.3:c.965C>T	p.Ala322Val	p.A322V	ENST00000375856	NM_003749.2	322	gCg/gTg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609984	81609984	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765367813		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	108	268	0	ENST00000298171.2:c.1582C>T	p.Arg528Cys	p.R528C	ENST00000298171	NM_000369.2	528	Cgc/Tgc																																																																															
RAD51	5888	MSKCC	GRCh37	15	41011090	41011090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	207	491	0	ENST00000267868.3:c.523G>A	p.Ala175Thr	p.A175T	ENST00000267868	NM_002875.4	175	Gct/Act																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712824	43712824	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	241	671	0	ENST00000382044.4:c.4360C>T	p.Arg1454Ter	p.R1454*	ENST00000382044	NM_001141980.1	1454	Cga/Tga																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	152	438	2	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354374	354374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	259	634	2	ENST00000262320.3:c.1184G>A	p.Arg395His	p.R395H	ENST00000262320	NM_003502.3	395	cGc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786719	3786719	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	287	722	0	ENST00000262367.5:c.4492C>T	p.Arg1498Ter	p.R1498*	ENST00000262367	NM_004380.2	1498	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789591	3789591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	130	320	3	ENST00000262367.5:c.4268delC	p.Pro1423LeufsTer36	p.P1423Lfs*36	ENST00000262367	NM_004380.2	1423	cCt/ct																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	100	400	1	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346157	89346158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	40	267	1	ENST00000301030.4:c.6792dup	p.Ala2265ArgfsTer8	p.A2265Rfs*8	ENST00000301030	NM_001256183.1	2264	-/C																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961790	15961790	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762874617		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	177	470	0	ENST00000268712.3:c.6005C>T	p.Ala2002Val	p.A2002V	ENST00000268712	NM_006311.3	2002	gCg/gTg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	263	590	2	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244970	41244970	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	293	783	0	ENST00000357654.3:c.2578A>G	p.Thr860Ala	p.T860A	ENST00000357654	NM_007294.3	860	Aca/Gca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771831816		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	126	376	0	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	192	576	0	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	196	443	0	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740726	58740726	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	228	496	0	ENST00000305921.3:c.1631G>C	p.Gly544Ala	p.G544A	ENST00000305921	NM_003620.3	544	gGc/gCc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59820415	59820415	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	147	393	0	ENST00000259008.2:c.2338A>G	p.Ile780Val	p.I780V	ENST00000259008	NM_032043.2	780	Ata/Gta																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732385	74732385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	115	324	0	ENST00000359995.5:c.524C>T	p.Ser175Leu	p.S175L	ENST00000359995	NM_001195427.1	175	tCg/tTg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612320	1612320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	314	781	0	ENST00000344749.5:c.1699C>T	p.Arg567Trp	p.R567W	ENST00000344749	NM_001136139.2	567	Cgg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244243	5244243	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	227	592	0	ENST00000357368.4:c.1239delC	p.Ser414AlafsTer30	p.S414Afs*30	ENST00000357368	NM_002850.3	413	ccC/cc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376248	15376248	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	153	516	4	ENST00000263377.2:c.766delC	p.Gln256SerfsTer27	p.Q256Sfs*27	ENST00000263377	NM_058243.2	256	Cag/ag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223175	36223175	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	271	896	2	ENST00000222270.7:c.5730del	p.Arg1911AspfsTer23	p.R1911Dfs*23	ENST00000222270	NM_014727.1	1909	Ccc/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224111	36224111	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	255	740	2	ENST00000222270.7:c.6666del	p.Thr2223ProfsTer38	p.T2223Pfs*38	ENST00000222270	NM_014727.1	2221	Ccc/cc																																																																															
AXL	558	MSKCC	GRCh37	19	41745212	41745212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	146	488	0	ENST00000301178.4:c.1278G>T	p.Trp426Cys	p.W426C	ENST00000301178	NM_021913.4	426	tgG/tgT																																																																															
CIC	23152	MSKCC	GRCh37	19	42797933	42797935	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	256	761	0	ENST00000575354.2:c.3988_3990del	p.Lys1330del	p.K1330del	ENST00000575354	NM_015125.3	1329	AAG/-																																																																															
ALK	238	MSKCC	GRCh37	2	29445400	29445400	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	249	727	0	ENST00000389048.3:c.3433del	p.Leu1145CysfsTer5	p.L1145Cfs*5	ENST00000389048	NM_004304.4	1145	Ctg/tg																																																																															
ALK	238	MSKCC	GRCh37	2	30142910	30142910	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141093002		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	260	705	1	ENST00000389048.3:c.616G>A	p.Ala206Thr	p.A206T	ENST00000389048	NM_004304.4	206	Gcg/Acg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47705459	47705459	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	126	331	0	ENST00000233146.2:c.2260del	p.Thr754LeufsTer9	p.T754Lfs*9	ENST00000233146	NM_000251.2	753	ggA/gg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	230	424	16	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99172161	99172161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	181	448	0	ENST00000074304.5:c.1727C>T	p.Pro576Leu	p.P576L	ENST00000074304	NM_001134224.1	576	cCg/cTg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128028933	128028933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	188	580	0	ENST00000285398.2:c.1924C>T	p.Arg642Trp	p.R642W	ENST00000285398	NM_000122.1	642	Cgg/Tgg																																																																															
CASP8	841	MSKCC	GRCh37	2	202149799	202149799	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	206	579	1	ENST00000358485.4:c.1245delT	p.Phe415LeufsTer26	p.F415Lfs*26	ENST00000358485	NM_001080125.1	414	Ttt/tt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021461	31021461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	160	427	0	ENST00000375687.4:c.1460C>T	p.Ala487Val	p.A487V	ENST00000375687	NM_015338.5	487	gCt/gTt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31372649	31372649	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200902224		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	179	451	0	ENST00000328111.2:c.290G>A	p.Arg97His	p.R97H	ENST00000328111	NM_006892.3	97	cGt/cAt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31376726	31376726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	195	474	0	ENST00000328111.2:c.721G>A	p.Ala241Thr	p.A241T	ENST00000328111	NM_006892.3	241	Gcc/Acc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39744972	39744972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	157	395	0	ENST00000361337.2:c.1762G>A	p.Val588Ile	p.V588I	ENST00000361337	NM_003286.2	588	Gta/Ata																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877391	40877391	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372713520		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	208	578	0	ENST00000373198.4:c.2305G>A	p.Val769Met	p.V769M	ENST00000373198	NM_133170.3	769	Gtg/Atg																																																																															
RAC2	5880	MSKCC	GRCh37	22	37637694	37637694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	251	578	0	ENST00000249071.6:c.40G>A	p.Val14Met	p.V14M	ENST00000249071	NM_002872.4	14	Gtg/Atg																																																																															
EP300	2033	MSKCC	GRCh37	22	41573155	41573155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	246	614	0	ENST00000263253.7:c.5440C>T	p.Arg1814Trp	p.R1814W	ENST00000263253	NM_001429.3	1814	Cgg/Tgg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47084146	47084146	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	230	485	0	ENST00000409792.3:c.7143del	p.Ser2382LeufsTer29	p.S2382Lfs*29	ENST00000409792	NM_014159.6	2381	ccC/cc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49932636	49932636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	208	596	0	ENST00000296474.3:c.3235C>T	p.Arg1079Trp	p.R1079W	ENST00000296474	NM_002447.2	1079	Cgg/Tgg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1959681	1959681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	82	225	1	ENST00000382891.5:c.2903G>A	p.Arg968His	p.R968H	ENST00000382891	NM_133335.3	968	cGt/cAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356229	66356229	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	240	600	0	ENST00000273854.3:c.1268delA	p.Asn423ThrfsTer5	p.N423Tfs*5	ENST00000273854	NM_004439.5	423	aAc/ac																																																																															
SDHA	6389	MSKCC	GRCh37	5	224548	224548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	205	492	0	ENST00000264932.6:c.224G>A	p.Arg75Gln	p.R75Q	ENST00000264932	NM_004168.2	75	cGa/cAa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	439	564	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112170861	112170861	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	160	432	0	ENST00000257430.4:c.1957A>G	p.Arg653Gly	p.R653G	ENST00000257430	NM_000038.5	653	Agg/Ggg																																																																															
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	105	286	0	ENST00000257430.4:c.4393_4394dupAG	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931451	131931452	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	72	316	1	ENST00000265335.6:c.2164_2165dup	p.Glu723ArgfsTer14	p.E723Rfs*14	ENST00000265335		719	cta/ctAAa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	65	170	2	ENST00000265335.6:c.2801delA	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459840	149459840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	208	631	2	ENST00000286301.3:c.367G>A	p.Ala123Thr	p.A123T	ENST00000286301	NM_005211.3	123	Gca/Aca																																																																															
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	138	253	0	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839847	27839847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	204	503	0	ENST00000328488.2:c.247C>A	p.Leu83Met	p.L83M	ENST00000328488	NM_003533.2	83	Ctg/Atg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166206	32166206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	279	640	0	ENST00000375023.3:c.4748G>A	p.Arg1583His	p.R1583H	ENST00000375023	NM_004557.3	1583	cGt/cAt																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43742094	43742094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	280	720	2	ENST00000523873.1:c.83C>A	p.Pro28His	p.P28H	ENST00000523873		28	cCc/cAc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117631301	117631301	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199882276		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	164	441	0	ENST00000368508.3:c.6377G>A	p.Arg2126Gln	p.R2126Q	ENST00000368508	NM_002944.2	2126	cGg/cAg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117718162	117718162	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	253	568	0	ENST00000368508.3:c.695T>C	p.Leu232Pro	p.L232P	ENST00000368508	NM_002944.2	232	cTg/cCg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152201873	152201873	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779180038		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	126	341	0	ENST00000206249.3:c.727C>T	p.Arg243Cys	p.R243C	ENST00000206249	NM_000125.3	243	Cgt/Tgt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522598	157522598	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	194	507	0	ENST00000346085.5:c.4870C>T	p.Arg1624Ter	p.R1624*	ENST00000346085	NM_020732.3	1624	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987423	2987423	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	110	444	0	ENST00000396946.4:c.8-2del		p.X3_splice	ENST00000396946	NM_032415.4	3																																																																																
WHSC1L1	54904	MSKCC	GRCh37	8	38205092	38205092	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	154	736	7	ENST00000317025.8:c.598del	p.Ser200AlafsTer20	p.S200Afs*20	ENST00000317025	NM_023034.1	200	Agc/gc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	189	561	1	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499823	8499823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	162	404	1	ENST00000356435.5:c.2146C>T	p.Arg716Cys	p.R716C	ENST00000356435		716	Cgc/Tgc																																																																															
TEK	7010	MSKCC	GRCh37	9	27213564	27213564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	180	531	0	ENST00000380036.4:c.2960G>A	p.Arg987Gln	p.R987Q	ENST00000380036	NM_000459.3	987	cGa/cAa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223563	53223563	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	180	257	0	ENST00000375401.3:c.3796C>T	p.Gln1266Ter	p.Q1266*	ENST00000375401	NM_004187.3	1266	Cag/Tag																																																																															
BTK	695	MSKCC	GRCh37	X	100608310	100608310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	247	343	2	ENST00000308731.7:c.1780G>T	p.Gly594Trp	p.G594W	ENST00000308731	NM_000061.2	594	Ggg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	53	419	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	101	384	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175720	112175720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	98	314	0	ENST00000257430.4:c.4429C>T	p.Gln1477Ter	p.Q1477*	ENST00000257430	NM_000038.5	1477	Cag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117361	115117368	+	frameshift_variant	Frame_Shift_Del	DEL	GTATGTCC	GTATGTCC	-			P-0036347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	33	380	0	ENST00000257566.3:c.806_813del	p.Arg269LeufsTer6	p.R269Lfs*6	ENST00000257566	NM_016569.3	269	cGGACATAC/c																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10246826	10246826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	50	720	1	ENST00000340748.4:c.4579G>A	p.Val1527Ile	p.V1527I	ENST00000340748		1527	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	167	869	1	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720828	89720828	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0036352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	20	395	0	ENST00000371953.3:c.979A>T	p.Lys327Ter	p.K327*	ENST00000371953	NM_000314.4	327	Aaa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845119	151845122	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TTTA	TTTA	-			P-0036352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	34	461	0	ENST00000262189.6:c.13890_13893del	p.Lys4631ValfsTer13	p.K4631Vfs*13	ENST00000262189	NM_170606.2	4630	ccTAAA/cc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	44	400	1	ENST00000380152.3:c.5351delA	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672323	86672323	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	49	360	1	ENST00000274376.6:c.2125C>T	p.Arg709Ter	p.R709*	ENST00000274376	NM_002890.2	709	Cga/Tga																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	135	560	21	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	67	493	2	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	90	388	6	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	213	765	30	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279861	46279866	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	52	475	1	ENST00000371998.3:c.3810_3815delACAGCA	p.Gln1275_Gln1276del	p.Q1275_Q1276del	ENST00000371998		1263	CAGCAA/-																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012465	29012465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	67	485	0	ENST00000282397.4:c.406G>A	p.Val136Ile	p.V136I	ENST00000282397	NM_002019.4	136	Gta/Ata																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	46	595	4	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																															
APC	324	MSKCC	GRCh37	5	112174783	112174783	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	76	242	1	ENST00000257430.4:c.3495del	p.Lys1165AsnfsTer17	p.K1165Nfs*17	ENST00000257430	NM_000038.5	1164	atA/at																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	168	395	20	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
APC	324	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	61	375	0	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga																																																																															
CALR	811	MSKCC	GRCh37	19	13054650	13054658	+	inframe_deletion	In_Frame_Del	DEL	GAGGATGAG	GAGGATGAG	-	rs550353351		P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	49	471	0	ENST00000316448.5:c.1191_1199del	p.Glu398_Asp400del	p.E398_D400del	ENST00000316448	NM_004343.3	393	GAGGATGAG/-																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	78	534	3	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056262	27056262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	122	429	7	ENST00000324856.7:c.1258C>T	p.Gln420Ter	p.Q420*	ENST00000324856	NM_006015.4	420	Cag/Tag																																																																															
RET	5979	MSKCC	GRCh37	10	43597879	43597879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1141	123	894	0	ENST00000355710.3:c.427G>A	p.Ala143Thr	p.A143T	ENST00000355710	NM_020975.4	143	Gcc/Acc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165282	47165283	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	128	431	1	ENST00000409792.3:c.843dupA	p.Glu282ArgfsTer9	p.E282Rfs*9	ENST00000409792	NM_014159.6	281	-/A																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50482355	50482355	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	103	531	3	ENST00000394963.4:c.711del	p.Phe237LeufsTer5	p.F237Lfs*5	ENST00000394963	NM_003076.4	236	Ttt/tt																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029072	14029072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	46	255	0	ENST00000311895.7:c.1283C>T	p.Ala428Val	p.A428V	ENST00000311895	NM_005236.2	428	gCg/gTg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549116	21549116	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	80	559	0	ENST00000382592.4:c.3160C>T	p.Arg1054Ter	p.R1054*	ENST00000382592	NM_014572.2	1054	Cga/Tga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303304	15303304	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145069047		P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	238	774	22	ENST00000263388.2:c.224G>A	p.Arg75Gln	p.R75Q	ENST00000263388	NM_000435.2	75	cGg/cAg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070324	37070324	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63749795		P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	151	315	18	ENST00000231790.2:c.1459C>T	p.Arg487Ter	p.R487*	ENST00000231790	NM_000249.3	487	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946340	2946340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1170	121	941	0	ENST00000396946.4:c.3397C>T	p.Arg1133Cys	p.R1133C	ENST00000396946	NM_032415.4	1133	Cgc/Tgc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	85	397	13	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022295	31022295	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	30	353	0	ENST00000375687.4:c.1780T>C	p.Cys594Arg	p.C594R	ENST00000375687	NM_015338.5	594	Tgc/Cgc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509084	66509085	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	20	255	3	ENST00000273854.3:c.242dupA	p.Asn81LysfsTer8	p.N81Kfs*8	ENST00000273854	NM_004439.5	81	aat/aaAt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	113	669	10	ENST00000382891.5:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382891	NM_133335.3	1341	Ccc/cc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	143	916	2	ENST00000294008.3:c.1406delC	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304140	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	40	478	1	ENST00000355112.3:c.1543_1544del	p.Asn515Ter	p.N515*	ENST00000355112	NM_000057.2	512	ggAAaa/ggaa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78899231	78899231	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200514795		P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	81	571	0	ENST00000306801.3:c.2870C>T	p.Thr957Met	p.T957M	ENST00000306801	NM_020761.2	957	aCg/aTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5211779	5211779	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	85	684	0	ENST00000357368.4:c.5056C>T	p.Arg1686Trp	p.R1686W	ENST00000357368	NM_002850.3	1686	Cgg/Tgg																																																																															
SESN3	143686	MSKCC	GRCh37	11	94908685	94908685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	173	665	24	ENST00000536441.1:c.1369C>T	p.Arg457Trp	p.R457W	ENST00000536441	NM_144665.3	457	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919194	178919194	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	25	232	2	ENST00000263967.3:c.685del	p.Thr229LeufsTer11	p.T229Lfs*11	ENST00000263967	NM_006218.2	227	Aaa/aa																																																																															
INSR	3643	MSKCC	GRCh37	19	7117191	7117191	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	63	657	4	ENST00000302850.5:c.4025del	p.Gly1342AlafsTer23	p.G1342Afs*23	ENST00000302850	NM_000208.2	1342	gGc/gc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30102133	30102133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	68	610	0	ENST00000331968.5:c.1334G>A	p.Arg445Lys	p.R445K	ENST00000331968	NM_002742.2	445	aGa/aAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373548	118373548	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	44	380	0	ENST00000534358.1:c.6941T>C	p.Leu2314Pro	p.L2314P	ENST00000534358	NM_005933.3	2314	cTg/cCg																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480130	50480130	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	51	387	0	ENST00000394963.4:c.364A>G	p.Asn122Asp	p.N122D	ENST00000394963	NM_003076.4	122	Aat/Gat																																																																															
POLE	5426	MSKCC	GRCh37	12	133218359	133218359	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	107	793	2	ENST00000320574.5:c.5252C>G	p.Ala1751Gly	p.A1751G	ENST00000320574	NM_006231.2	1751	gCc/gGc																																																																															
POLE	5426	MSKCC	GRCh37	12	133220501	133220501	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	104	677	0	ENST00000320574.5:c.4212G>T	p.Glu1404Asp	p.E1404D	ENST00000320574	NM_006231.2	1404	gaG/gaT																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778545	3778545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	155	901	0	ENST00000262367.5:c.6503G>A	p.Gly2168Asp	p.G2168D	ENST00000262367	NM_004380.2	2168	gGc/gAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781449	3781449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	121	393	9	ENST00000262367.5:c.4916C>T	p.Ala1639Val	p.A1639V	ENST00000262367	NM_004380.2	1639	gCt/gTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992370	72992370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	262	927	34	ENST00000268489.5:c.1675G>A	p.Val559Ile	p.V559I	ENST00000268489	NM_006885.3	559	Gtt/Att																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217036	7217036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	79	441	1	ENST00000380728.2:c.485G>A	p.Arg162Gln	p.R162Q	ENST00000380728		162	cGg/cAg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612386	1612386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	142	844	1	ENST00000344749.5:c.1633C>T	p.Arg545Trp	p.R545W	ENST00000344749	NM_001136139.2	545	Cgg/Tgg																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627774	14627774	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	71	635	9	ENST00000254322.2:c.296A>G	p.His99Arg	p.H99R	ENST00000254322	NM_006145.1	99	cAt/cGt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311647	15311647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	16	47	1	ENST00000263388.2:c.70G>A	p.Val24Met	p.V24M	ENST00000263388	NM_000435.2	24	Gtg/Atg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224699	36224699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1221	124	1056	2	ENST00000222270.7:c.7085C>T	p.Pro2362Leu	p.P2362L	ENST00000222270	NM_014727.1	2362	cCg/cTg																																																																															
AXL	558	MSKCC	GRCh37	19	41749577	41749577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	104	614	2	ENST00000301178.4:c.1502G>A	p.Arg501His	p.R501H	ENST00000301178	NM_021913.4	501	cGc/cAc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48028240	48028241	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	75	428	0	ENST00000234420.5:c.3119_3120del	p.Phe1040Ter	p.F1040*	ENST00000234420	NM_000179.2	1040	TTt/t																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098705	47098705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	257	657	17	ENST00000409792.3:c.6569C>T	p.Pro2190Leu	p.P2190L	ENST00000409792	NM_014159.6	2190	cCc/cTc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880915	134880915	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	84	560	0	ENST00000398015.3:c.1478T>G	p.Ile493Ser	p.I493S	ENST00000398015	NM_004441.4	493	aTt/aGt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535280	66535280	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	70	608	0	ENST00000273854.3:c.181G>T	p.Val61Leu	p.V61L	ENST00000273854	NM_004439.5	61	Gtg/Ttg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56176909	56176909	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	36	266	0	ENST00000399503.3:c.2180-1G>T		p.X727_splice	ENST00000399503	NM_005921.1	727																																																																																
PLK2	10769	MSKCC	GRCh37	5	57755669	57755670	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	200	745	14	ENST00000274289.3:c.117dupC	p.Glu40ArgfsTer66	p.E40Rfs*66	ENST00000274289	NM_006622.3	39	-/C																																																																															
APC	324	MSKCC	GRCh37	5	112179589	112179589	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	80	316	9	ENST00000257430.4:c.8298C>A	p.Ser2766Arg	p.S2766R	ENST00000257430	NM_000038.5	2766	agC/agA																																																																															
IRF4	3662	MSKCC	GRCh37	6	394891	394891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	66	414	0	ENST00000380956.4:c.287G>A	p.Arg96His	p.R96H	ENST00000380956	NM_001195286.1	96	cGc/cAc																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839769	27839769	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	151	537	19	ENST00000328488.2:c.325A>G	p.Asn109Asp	p.N109D	ENST00000328488	NM_003533.2	109	Aac/Gac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968244	2968244	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1161484391		P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	89	784	0	ENST00000396946.4:c.1742C>T	p.Ala581Val	p.A581V	ENST00000396946	NM_032415.4	581	gCg/gTg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5072538	5072538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	38	340	0	ENST00000381652.3:c.1688T>C	p.Val563Ala	p.V563A	ENST00000381652	NM_004972.3	563	gTa/gCa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227670	53227670	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	68	267	0	ENST00000375401.3:c.2516+2T>C		p.X839_splice	ENST00000375401	NM_004187.3	839																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	33	543	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843510	3843510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	45	676	2	ENST00000262367.5:c.1093C>T	p.His365Tyr	p.H365Y	ENST00000262367	NM_004380.2	365	Cat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7572936	7572948	+	frameshift_variant	Frame_Shift_Del	DEL	GTCAGGCCCTTCT	GTCAGGCCCTTCT	-			P-0036312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	40	601	0	ENST00000269305.4:c.1161_1173del	p.Glu388GlnfsTer30	p.E388Qfs*30	ENST00000269305	NM_001126112.2	387	acAGAAGGGCCTGAC/ac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0028391-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			562	4477	619	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0028391-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			639	4396	645	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028391-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			400	486	701	1	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0036215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	80	571	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133250284	133250284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	56	482	0	ENST00000320574.5:c.1236G>C	p.Lys412Asn	p.K412N	ENST00000320574	NM_006231.2	412	aaG/aaC																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217849	7217850	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	59	607	0	ENST00000380728.2:c.161dupA	p.Glu55GlyfsTer42	p.E55Gfs*42	ENST00000380728		54	aag/aaAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878782	151878782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	66	506	0	ENST00000262189.6:c.6163G>A	p.Asp2055Asn	p.D2055N	ENST00000262189	NM_170606.2	2055	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0036223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	122	674	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584534	187584534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	88	657	0	ENST00000441802.2:c.3499G>T	p.Asp1167Tyr	p.D1167Y	ENST00000441802	NM_005245.3	1167	Gat/Tat																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858281	27858281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	44	655	0	ENST00000359303.2:c.290G>A	p.Cys97Tyr	p.C97Y	ENST00000359303	NM_003535.2	97	tGc/tAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115758	8115846	+	frameshift_variant	Frame_Shift_Del	DEL	GTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCA	GTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCA	-			P-0036237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	249	480	0	ENST00000346208.3:c.1105_1193del	p.Ser369ThrfsTer108	p.S369Tfs*108	ENST00000346208		368	atGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAga/atga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720804	89720804	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	156	213	0	ENST00000371953.3:c.955del	p.Thr319LeufsTer2	p.T319Lfs*2	ENST00000371953	NM_000314.4	319	Act/ct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0036262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	43	500	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs757274881		P-0036262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	57	743	0	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584607	48584607	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	42	485	0	ENST00000342988.3:c.781delC	p.His261IlefsTer75	p.H261Ifs*75	ENST00000342988	NM_005359.5	260	taC/ta																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639102	3639102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	46	720	1	ENST00000294008.3:c.4537G>A	p.Val1513Ile	p.V1513I	ENST00000294008	NM_032444.2	1513	Gtt/Att																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099982	157099982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	25	139	0	ENST00000346085.5:c.919G>A	p.Gly307Ser	p.G307S	ENST00000346085	NM_020732.3	307	Ggc/Agc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6029479	6029479	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	69	468	0	ENST00000265849.7:c.1096G>C	p.Asp366His	p.D366H	ENST00000265849	NM_000535.5	366	Gat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0036263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	69	403	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	75	296	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	69	485	1	ENST00000269305.4:c.800G>A	p.Arg267Gln	p.R267Q	ENST00000269305	NM_001126112.2	267	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519896		P-0036263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	62	282	0	ENST00000281708.4:c.1514G>T	p.Arg505Leu	p.R505L	ENST00000281708	NM_033632.3	505	cGc/cTc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45422959	45422959	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	57	362	2	ENST00000262160.6:c.169C>T	p.Arg57Ter	p.R57*	ENST00000262160	NM_005901.5	57	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101006	27101006	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	58	552	0	ENST00000324856.7:c.4288C>T	p.Gln1430Ter	p.Q1430*	ENST00000324856	NM_006015.4	1430	Cag/Tag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117631271	117631271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	53	365	0	ENST00000368508.3:c.6407G>A	p.Gly2136Glu	p.G2136E	ENST00000368508	NM_002944.2	2136	gGa/gAa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482864	67482864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	115	370	1	ENST00000327367.4:c.1268G>A	p.Ser423Asn	p.S423N	ENST00000327367	NM_005902.3	423	aGt/aAt																																																																															
HGF	3082	MSKCC	GRCh37	7	81334828	81334828	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs769585774		P-0036263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	116	370	0	ENST00000222390.5:c.1888C>T	p.Arg630Ter	p.R630*	ENST00000222390	NM_000601.4	630	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119787	70119788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	68	456	0	ENST00000245479.2:c.790dup	p.Arg264LysfsTer32	p.R264Kfs*32	ENST00000245479	NM_000346.3	263	-/A																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45422986	45422986	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	51	365	0	ENST00000262160.6:c.142C>G	p.Leu48Val	p.L48V	ENST00000262160	NM_005901.5	48	Ctg/Gtg																																																																															
HGF	3082	MSKCC	GRCh37	7	81355321	81355321	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	72	288	0	ENST00000222390.5:c.1053A>C	p.Glu351Asp	p.E351D	ENST00000222390	NM_000601.4	351	gaA/gaC																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841000	15841000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	177	272	0	ENST00000307771.7:c.1084G>A	p.Glu362Lys	p.E362K	ENST00000307771	NM_005089.3	362	Gaa/Aaa																																																																															
ATM	472	MSKCC	GRCh37	11	108123635	108123635	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	130	389	0	ENST00000278616.4:c.1894G>C	p.Glu632Gln	p.E632Q	ENST00000278616	NM_000051.3	632	Gaa/Caa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444206	49444206	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	212	790	0	ENST00000301067.7:c.3165G>C	p.Leu1055Phe	p.L1055F	ENST00000301067	NM_003482.3	1055	ttG/ttC																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176145127	176145127	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	151	401	0	ENST00000367669.3:c.484C>T	p.Gln162Ter	p.Q162*	ENST00000367669	NM_022457.5	162	Cag/Tag																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982105	201982105	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0036264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	265	634	0	ENST00000359651.3:c.629C>G	p.Ser210Ter	p.S210*	ENST00000359651		210	tCa/tGa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982137	201982137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	273	631	0	ENST00000359651.3:c.661C>T	p.Pro221Ser	p.P221S	ENST00000359651		221	Ccc/Tcc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120663	115120663	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	208	714	0	ENST00000257566.3:c.343C>G	p.Gln115Glu	p.Q115E	ENST00000257566	NM_016569.3	115	Cag/Gag																																																																															
SETD8	387893	MSKCC	GRCh37	12	123889456	123889456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	107	344	0	ENST00000330479.4:c.683G>A	p.Arg228Lys	p.R228K	ENST00000330479	NM_020382.3	228	aGg/aAg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600380	10600380	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	234	702	0	ENST00000171111.5:c.1475C>G	p.Pro492Arg	p.P492R	ENST00000171111	NM_203500.1	492	cCa/cGa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661300	227661300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	243	708	0	ENST00000305123.5:c.2155G>A	p.Glu719Lys	p.E719K	ENST00000305123	NM_005544.2	719	Gag/Aag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93955158	93955158	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	128	476	0	ENST00000369303.4:c.2740C>G	p.Leu914Val	p.L914V	ENST00000369303	NM_004440.3	914	Ctt/Gtt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040680	47040680	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	240	346	0	ENST00000329236.7:c.1081C>T	p.Gln361Ter	p.Q361*	ENST00000329236	NM_001204466.1	361	Caa/Taa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0036267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	28	344	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931588		P-0036267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	10	362	1	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0036267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	68	421	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0036268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	141	448	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0036268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	229	597	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2956956	2956956	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	274	491	0	ENST00000396946.4:c.2671C>T	p.Arg891Ter	p.R891*	ENST00000396946	NM_032415.4	891	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120175	70120175	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	114	363	0	ENST00000245479.2:c.1177C>T	p.Gln393Ter	p.Q393*	ENST00000245479	NM_000346.3	393	Cag/Tag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11272449	11272449	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	146	461	0	ENST00000361445.4:c.3481C>T	p.Arg1161Ter	p.R1161*	ENST00000361445	NM_004958.3	1161	Cga/Tga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289953	15289953	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772172068		P-0036268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	208	685	0	ENST00000263388.2:c.3601C>T	p.Arg1201Cys	p.R1201C	ENST00000263388	NM_000435.2	1201	Cgc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221226	1221226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	179	553	2	ENST00000326873.7:c.749C>T	p.Thr250Met	p.T250M	ENST00000326873	NM_000455.4	250	aCg/aTg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102196203	102196203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	131	352	0	ENST00000263464.3:c.860G>A	p.Ser287Asn	p.S287N	ENST00000263464	NM_001165.4	287	aGt/aAt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554681	63554681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	148	440	0	ENST00000307078.5:c.58G>T	p.Asp20Tyr	p.D20Y	ENST00000307078	NM_004655.3	20	Gat/Tat																																																																															
KDR	3791	MSKCC	GRCh37	4	55972106	55972106	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0036268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	122	334	0	ENST00000263923.4:c.1538C>G	p.Thr513Ser	p.T513S	ENST00000263923	NM_002253.2	513	aCt/aGt																																																																															
APC	324	MSKCC	GRCh37	5	112173531	112173532	+	stop_gained	Nonsense_Mutation	DNP	CA	CA	AG			P-0036268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	101	302	0	ENST00000257430.4:c.2240_2241delinsAG	p.Ser747Ter	p.S747*	ENST00000257430	NM_000038.5	747	tCA/tAG																																																																															
APC	324	MSKCC	GRCh37	5	112175634	112175634	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	107	301	0	ENST00000257430.4:c.4344del	p.Lys1449SerfsTer24	p.K1449Sfs*24	ENST00000257430	NM_000038.5	1448	aCc/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	86	470	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591889	48591889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	127	536	1	ENST00000342988.3:c.1052A>G	p.Asp351Gly	p.D351G	ENST00000342988	NM_005359.5	351	gAt/gGt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741958	145741958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	58	641	0	ENST00000428558.2:c.545G>A	p.Arg182Gln	p.R182Q	ENST00000428558	NM_004260.3	182	cGg/cAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351803	89351803	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	214	852	0	ENST00000301030.4:c.1147A>G	p.Ile383Val	p.I383V	ENST00000301030	NM_001256183.1	383	Ata/Gta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0036270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	143	490	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715678	30715678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	123	402	0	ENST00000359013.4:c.1411G>A	p.Asp471Asn	p.D471N	ENST00000359013	NM_001024847.2	471	Gat/Aat																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210506	5210506	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	75	647	0	ENST00000357368.4:c.5461C>T	p.Arg1821Ter	p.R1821*	ENST00000357368	NM_002850.3	1821	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0036276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	176	363	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0036276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	58	598	1	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22127164	22127164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	24	476	0	ENST00000215832.6:c.964G>A	p.Glu322Lys	p.E322K	ENST00000215832	NM_002745.4	322	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	90	672	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																															
CDH1	999	MSKCC	GRCh37	16	68835794	68835794	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0036276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	212	481	0	ENST00000261769.5:c.385C>T	p.Gln129Ter	p.Q129*	ENST00000261769	NM_004360.3	129	Cag/Tag																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	42	389	0	ENST00000244661.2:c.316G>A	p.Glu106Lys	p.E106K	ENST00000244661	NM_003537.3	106	Gag/Aag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	241	512	1	ENST00000371085.3:c.602G>T	p.Arg201Leu	p.R201L	ENST00000371085	NM_000516.4	201	cGt/cTt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678735	52678735	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0036276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	43	572	0	ENST00000394830.3:c.884C>G	p.Ser295Ter	p.S295*	ENST00000394830	NM_018313.4	295	tCa/tGa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28959097	28959097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	147	501	0	ENST00000282397.4:c.2041G>C	p.Asp681His	p.D681H	ENST00000282397	NM_002019.4	681	Gac/Cac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106238	27106238	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	199	657	0	ENST00000324856.7:c.5850del	p.Asn1951ThrfsTer5	p.N1951Tfs*5	ENST00000324856	NM_006015.4	1950	cGg/cg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061087	38061190	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGCGCCAGAGGGGTCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTT	GAGGCGCCAGAGGGGTCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTT	-			P-0036276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	258	211	0	ENST00000250448.2:c.799_902del	p.Lys267Ter	p.K267*	ENST00000250448	NM_004496.3	267	AAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGCGGCCCTGAGAGCCGCAAGGACCCCTCTGGCGCCTCt/t																																																																															
MGA	23269	MSKCC	GRCh37	15	42041125	42041125	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	214	533	0	ENST00000219905.7:c.5503G>A	p.Gly1835Arg	p.G1835R	ENST00000219905	NM_001164273.1	1835	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579558	7579558	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	85	673	1	ENST00000269305.4:c.129G>C	p.Leu43Phe	p.L43F	ENST00000269305	NM_001126112.2	43	ttG/ttC																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004666	16004666	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	91	635	0	ENST00000268712.3:c.2588C>G	p.Ala863Gly	p.A863G	ENST00000268712	NM_006311.3	863	gCt/gGt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16041519	16041519	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	28	323	0	ENST00000268712.3:c.1360C>T	p.Gln454Ter	p.Q454*	ENST00000268712	NM_006311.3	454	Cag/Tag																																																																															
GNA11	2767	MSKCC	GRCh37	19	3121021	3121021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	37	626	0	ENST00000078429.4:c.924C>A	p.Phe308Leu	p.F308L	ENST00000078429	NM_002067.2	308	ttC/ttA																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281173	15281173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1231	565	775	0	ENST00000263388.2:c.5083G>A	p.Glu1695Lys	p.E1695K	ENST00000263388	NM_000435.2	1695	Gaa/Aaa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26022258	26022258	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	71	616	0	ENST00000435504.4:c.399G>C	p.Arg133Ser	p.R133S	ENST00000435504		133	agG/agC																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	99	409	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	120	541	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121909224		P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	64	460	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	50	521	1	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	90	517	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	117	645	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519942		P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	25	406	0	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	116	627	6	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164828	47164828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	73	371	0	ENST00000409792.3:c.1298G>A	p.Arg433His	p.R433H	ENST00000409792	NM_014159.6	433	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	78	518	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	62	448	1	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	132	654	5	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	23	142	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	59	574	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
ATM	472	MSKCC	GRCh37	11	108216546	108216546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	48	503	0	ENST00000278616.4:c.8495G>A	p.Arg2832His	p.R2832H	ENST00000278616	NM_000051.3	2832	cGt/cAt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877366	28877366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	75	448	1	ENST00000282397.4:c.3955G>A	p.Ala1319Thr	p.A1319T	ENST00000282397	NM_002019.4	1319	Gcg/Acg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	100	495	6	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134898755	134898755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	84	422	0	ENST00000398015.3:c.1813G>A	p.Glu605Lys	p.E605K	ENST00000398015	NM_004441.4	605	Gaa/Aaa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602335	10602335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	105	698	1	ENST00000171111.5:c.1243C>T	p.Arg415Cys	p.R415C	ENST00000171111	NM_203500.1	415	Cgc/Tgc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28919631	28919631	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200840674		P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	69	494	1	ENST00000282397.4:c.2306C>T	p.Ala769Val	p.A769V	ENST00000282397	NM_002019.4	769	gCg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781375	3781375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	117	633	1	ENST00000262367.5:c.4990C>T	p.Arg1664Cys	p.R1664C	ENST00000262367	NM_004380.2	1664	Cgc/Tgc																																																																															
ALK	238	MSKCC	GRCh37	2	30143440	30143440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	82	356	1	ENST00000389048.3:c.86C>T	p.Ala29Val	p.A29V	ENST00000389048	NM_004304.4	29	gCg/gTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827201	72827201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	87	517	1	ENST00000268489.5:c.9380C>T	p.Pro3127Leu	p.P3127L	ENST00000268489	NM_006885.3	3127	cCg/cTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42799131	42799131	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	140	688	2	ENST00000575354.2:c.4620delC	p.Thr1541LeufsTer79	p.T1541Lfs*79	ENST00000575354	NM_015125.3	1539	Ccc/cc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492894	56492894	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	81	345	0	ENST00000407977.2:c.45G>A	p.Trp15Ter	p.W15*	ENST00000407977		15	tgG/tgA																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413710	138413710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	98	374	2	ENST00000289153.2:c.1810delC	p.Arg604GlyfsTer4	p.R604Gfs*4	ENST00000289153	NM_006219.2	604	Cgg/gg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487212	56487212	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144549266		P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	92	565	0	ENST00000267101.3:c.1358G>A	p.Arg453His	p.R453H	ENST00000267101	NM_001982.3	453	cGt/cAt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481648	56481648	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	146	725	0	ENST00000267101.3:c.683A>G	p.His228Arg	p.H228R	ENST00000267101	NM_001982.3	228	cAt/cGt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	71	514	8	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119096	70119096	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	56	315	1	ENST00000245479.2:c.672del	p.Gly225AlafsTer28	p.G225Afs*28	ENST00000245479	NM_000346.3	223	tCc/tc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324917	31324917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	109	494	0	ENST00000412585.2:c.19delC	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000412585	NM_005514.6	7	Cga/ga																																																																															
YES1	7525	MSKCC	GRCh37	18	751705	751705	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	47	457	0	ENST00000314574.4:c.371C>T	p.Thr124Met	p.T124M	ENST00000314574	NM_005433.3	124	aCg/aTg																																																																															
E2F3	1871	MSKCC	GRCh37	6	20481637	20481637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	42	257	0	ENST00000346618.3:c.710del	p.Asn237ThrfsTer27	p.N237Tfs*27	ENST00000346618	NM_001949.4	236	Aaa/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444933	49444933	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	97	469	4	ENST00000301067.7:c.2533del	p.Arg845GlyfsTer85	p.R845Gfs*85	ENST00000301067	NM_003482.3	845	Cgg/gg																																																																															
HGF	3082	MSKCC	GRCh37	7	81350138	81350138	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	63	461	0	ENST00000222390.5:c.1194T>A	p.Asn398Lys	p.N398K	ENST00000222390	NM_000601.4	398	aaT/aaA																																																																															
WT1	7490	MSKCC	GRCh37	11	32456302	32456302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	115	666	0	ENST00000332351.3:c.590C>A	p.Pro197His	p.P197H	ENST00000332351	NM_024426.4	197	cCt/cAt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941317	71941317	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	110	558	0	ENST00000298229.2:c.1090+2T>C		p.X364_splice	ENST00000298229	NM_001567.3	364																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118343133	118343133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	66	424	0	ENST00000534358.1:c.1259G>A	p.Arg420Gln	p.R420Q	ENST00000534358	NM_005933.3	420	cGg/cAg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21628473	21628473	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	61	626	0	ENST00000421138.2:c.1145A>G	p.Asp382Gly	p.D382G	ENST00000421138		382	gAt/gGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120624	115120624	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	102	649	0	ENST00000257566.3:c.382T>C	p.Ser128Pro	p.S128P	ENST00000257566	NM_016569.3	128	Tcg/Ccg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99456316	99456316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	71	374	0	ENST00000268035.6:c.1633G>A	p.Gly545Ser	p.G545S	ENST00000268035	NM_000875.3	545	Ggc/Agc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3860612	3860612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	128	626	2	ENST00000262367.5:c.967C>T	p.Pro323Ser	p.P323S	ENST00000262367	NM_004380.2	323	Cca/Tca																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274219	10274219	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	61	360	0	ENST00000330684.3:c.50T>C	p.Val17Ala	p.V17A	ENST00000330684	NM_001134407.1	17	gTc/gCc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944228	81944228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	123	574	0	ENST00000359376.3:c.1837C>A	p.Leu613Ile	p.L613I	ENST00000359376	NM_002661.3	613	Ctc/Atc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351769	89351769	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	178	842	4	ENST00000301030.4:c.1181del	p.Asn394IlefsTer33	p.N394Ifs*33	ENST00000301030	NM_001256183.1	394	aAt/at																																																																															
NF1	4763	MSKCC	GRCh37	17	29588766	29588771	+	inframe_deletion	In_Frame_Del	DEL	ATGGCA	ATGGCA	-			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	55	320	0	ENST00000358273.4:c.4616_4621del	p.Met1539_Ala1540del	p.M1539_A1540del	ENST00000358273	NM_001042492.2	1539	ATGGCA/-																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30322711	30322711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	48	497	0	ENST00000322652.5:c.1724G>A	p.Arg575His	p.R575H	ENST00000322652	NM_015355.2	575	cGt/cAt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627360	37627361	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	88	580	0	ENST00000447079.4:c.1280dup	p.Leu427PhefsTer3	p.L427Ffs*3	ENST00000447079	NM_015083.1	425	-/T																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883986	37883986	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	137	644	0	ENST00000269571.5:c.3457C>T	p.Arg1153Ter	p.R1153*	ENST00000269571		1153	Cga/Tga																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25459827	25459827	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	114	525	0	ENST00000264709.3:c.2456T>C	p.Leu819Pro	p.L819P	ENST00000264709	NM_175629.2	819	cTg/cCg																																																																															
CASP8	841	MSKCC	GRCh37	2	202149583	202149583	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	84	495	0	ENST00000358485.4:c.1027del	p.His343ThrfsTer6	p.H343Tfs*6	ENST00000358485	NM_001080125.1	342	Ccc/cc																																																																															
BARD1	580	MSKCC	GRCh37	2	215610500	215610500	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	71	491	0	ENST00000260947.4:c.1756A>G	p.Ser586Gly	p.S586G	ENST00000260947	NM_000465.2	586	Agt/Ggt																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45651200	45651200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	136	561	0	ENST00000407780.3:c.825G>T	p.Trp275Cys	p.W275C	ENST00000407780	NM_001283052.1	275	tgG/tgT																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434176	12434176	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	77	486	0	ENST00000287820.6:c.544A>G	p.Ile182Val	p.I182V	ENST00000287820	NM_015869.4	182	Atc/Gtc																																																																															
APC	324	MSKCC	GRCh37	5	112176516	112176516	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199775075		P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	55	302	0	ENST00000257430.4:c.5225G>A	p.Arg1742His	p.R1742H	ENST00000257430	NM_000038.5	1742	cGt/cAt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721924	176721924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	104	566	0	ENST00000439151.2:c.7555G>A	p.Ala2519Thr	p.A2519T	ENST00000439151	NM_022455.4	2519	Gca/Aca																																																																															
FYN	2534	MSKCC	GRCh37	6	112029224	112029224	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	58	316	0	ENST00000368678.4:c.345-1G>T		p.X115_splice	ENST00000368678		115																																																																																
CARD11	84433	MSKCC	GRCh37	7	2979549	2979549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	162	503	0	ENST00000396946.4:c.698A>G	p.Lys233Arg	p.K233R	ENST00000396946	NM_032415.4	233	aAg/aGg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141566264	141566264	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	103	437	0	ENST00000220592.5:c.1146+2T>C		p.X382_splice	ENST00000220592	NM_012154.3	382																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8500816	8500816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	127	501	1	ENST00000356435.5:c.2066C>T	p.Ala689Val	p.A689V	ENST00000356435		689	gCc/gTc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793313	139793313	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	174	639	0	ENST00000247668.2:c.121C>A	p.Leu41Ile	p.L41I	ENST00000247668	NM_021138.3	41	Ctc/Atc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15821895	15821896	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	36	368	0	ENST00000307771.7:c.294dup	p.Arg99ThrfsTer46	p.R99Tfs*46	ENST00000307771	NM_005089.3	96	-/A																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006827	47006827	+	5_prime_UTR_variant	5'UTR	SNP	C	C	T			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	122	663	2	ENST00000329236.7:c.-54C>T		p.*18*	ENST00000329236	NM_001204466.1	18																																																																																
RBM10	8241	MSKCC	GRCh37	X	47040620	47040621	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	77	391	0	ENST00000329236.7:c.1023dup	p.Gly342ArgfsTer23	p.G342Rfs*23	ENST00000329236	NM_001204466.1	341	caa/cAaa																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652440	48652440	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	142	709	1	ENST00000376670.3:c.1111G>T	p.Val371Leu	p.V371L	ENST00000376670	NM_002049.3	371	Gtg/Ttg																																																																															
AR	367	MSKCC	GRCh37	X	66905929	66905929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	64	523	1	ENST00000374690.3:c.1846C>T	p.Arg616Cys	p.R616C	ENST00000374690	NM_000044.3	616	Cgt/Tgt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	172	635	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584624	187584624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1192	114	583	5	ENST00000441802.2:c.3409C>T	p.Pro1137Ser	p.P1137S	ENST00000441802	NM_005245.3	1137	Cca/Tca																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437122	110437122	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	17	80	0	ENST00000375856.3:c.1279C>A	p.His427Asn	p.H427N	ENST00000375856	NM_003749.2	427	Cac/Aac																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458328	12458329	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGCTC			P-0036286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	374	756	7	ENST00000287820.6:c.948_952dup	p.Val318AlafsTer20	p.V318Afs*20	ENST00000287820	NM_015869.4	315	-/CGCTC																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395221	139395221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	195	792	3	ENST00000277541.6:c.5717C>T	p.Ala1906Val	p.A1906V	ENST00000277541	NM_017617.3	1906	gCg/gTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	68	638	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71161692	71161692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	17	486	0	ENST00000318789.4:c.277C>T	p.Leu93Phe	p.L93F	ENST00000318789	NM_032682.5	93	Ctt/Ttt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79952294	79952294	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	12	447	0	ENST00000265081.6:c.302del	p.Val101GlufsTer25	p.V101Efs*25	ENST00000265081	NM_002439.4	101	gTa/ga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118366956	118366984	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGAGTCTTTTGGATTTCAAGGTACTGATA	GGAGTCTTTTGGATTTCAAGGTACTGATA	-			P-0036316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	10	420	0	ENST00000534358.1:c.5558-14_5572del		p.X1853_splice	ENST00000534358	NM_005933.3	1853																																																																																
STAT3	6774	MSKCC	GRCh37	17	40468806	40468850	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CCAAACTGCCCTCCTGCTGAGGGTTCAGCACCTTCACCATTATTT	CCAAACTGCCCTCCTGCTGAGGGTTCAGCACCTTCACCATTATTT	-			P-0036316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	13	515	0	ENST00000264657.5:c.2214_2257+1del		p.X738_splice	ENST00000264657	NM_139276.2	738																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0036319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	304	597	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482607	56482607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	200	910	0	ENST00000267101.3:c.1064C>T	p.Thr355Ile	p.T355I	ENST00000267101	NM_001982.3	355	aCc/aTc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	207	772	0	ENST00000206249.3:c.1138G>A	p.Glu380Lys	p.E380K	ENST00000206249	NM_000125.3	380	Gaa/Aaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257359	16257359	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	268	774	1	ENST00000375759.3:c.4624C>T	p.Arg1542Ter	p.R1542*	ENST00000375759	NM_015001.2	1542	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0036322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	345	779	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0036322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3137	2014	437	0	ENST00000269571.5:c.2305G>C	p.Asp769His	p.D769H	ENST00000269571		769	Gac/Cac																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736287	243736287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	176	532	0	ENST00000263826.5:c.760G>A	p.Glu254Lys	p.E254K	ENST00000263826	NM_005465.4	254	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	101	582	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	82	419	0	ENST00000342988.3:c.1157G>T	p.Gly386Val	p.G386V	ENST00000342988	NM_005359.5	386	gGt/gTt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805698	89805698	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0036116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	60	553	0	ENST00000389301.3:c.4011-1G>C		p.X1337_splice	ENST00000389301	NM_000135.2	1337																																																																																
FANCA	2175	MSKCC	GRCh37	16	89858933	89858933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	74	574	0	ENST00000389301.3:c.1029G>T	p.Gln343His	p.Q343H	ENST00000389301	NM_000135.2	343	caG/caT																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591792	48591792	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0036116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	73	511	0	ENST00000342988.3:c.956-1G>T		p.X319_splice	ENST00000342988	NM_005359.5	319																																																																																
IDH1	3417	MSKCC	GRCh37	2	209110121	209110121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	128	643	2	ENST00000345146.2:c.442G>T	p.Gly148Trp	p.G148W	ENST00000345146	NM_005896.2	148	Ggg/Tgg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149440515	149440515	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0036116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	40	692	0	ENST00000286301.3:c.1879A>T	p.Lys627Ter	p.K627*	ENST00000286301	NM_005211.3	627	Aag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006883	47006883	+	start_lost	Translation_Start_Site	SNP	G	G	C			P-0036116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	82	435	0	ENST00000329236.7:c.3G>C	p.Met1?	p.M1?	ENST00000329236	NM_001204466.1	1	atG/atC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	115	741	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	52	522	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	194	726	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	332	597	3	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11259348	11259348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	88	825	0	ENST00000361445.4:c.4220G>A	p.Gly1407Asp	p.G1407D	ENST00000361445	NM_004958.3	1407	gGc/gAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115748	8115748	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	98	491	0	ENST00000346208.3:c.1094A>G	p.Asn365Ser	p.N365S	ENST00000346208		365	aAc/aGc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245109	46245109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	161	617	3	ENST00000334344.6:c.3203G>A	p.Arg1068His	p.R1068H	ENST00000334344	NM_152641.2	1068	cGt/cAt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589223	67589223	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0036125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	100	366	1	ENST00000274335.5:c.1211T>G	p.Leu404Ter	p.L404*	ENST00000274335		404	tTa/tGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	159	530	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	76	310	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	126	466	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575671	48575671	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	40	610	0	ENST00000342988.3:c.431C>G	p.Ser144Ter	p.S144*	ENST00000342988	NM_005359.5	144	tCa/tGa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16001793	16001793	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	112	498	0	ENST00000268712.3:c.2708C>G	p.Ser903Ter	p.S903*	ENST00000268712	NM_006311.3	903	tCa/tGa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604787	48604787	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	12	386	0	ENST00000342988.3:c.1609G>C	p.Asp537His	p.D537H	ENST00000342988	NM_005359.5	537	Gac/Cac																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673595	30673595	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	108	772	0	ENST00000376406.3:c.3365C>G	p.Ser1122Cys	p.S1122C	ENST00000376406	NM_014641.2	1122	tCt/tGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061264	38061264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	37	590	1	ENST00000250448.2:c.725C>T	p.Ser242Phe	p.S242F	ENST00000250448	NM_004496.3	242	tCc/tTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29528086	29528086	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	61	344	0	ENST00000358273.4:c.1094C>G	p.Ser365Ter	p.S365*	ENST00000358273	NM_001042492.2	365	tCa/tGa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061226	38061226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	127	505	0	ENST00000250448.2:c.763G>A	p.Glu255Lys	p.E255K	ENST00000250448	NM_004496.3	255	Gag/Aag																																																																															
ALK	238	MSKCC	GRCh37	2	29498304	29498304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	103	569	0	ENST00000389048.3:c.1876G>A	p.Asp626Asn	p.D626N	ENST00000389048	NM_004304.4	626	Gac/Aac																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250440	26250440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	95	481	0	ENST00000446824.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000446824	NM_021018.2	132	Cgc/Tgc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180943	32180943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	82	578	0	ENST00000375023.3:c.2407G>A	p.Glu803Lys	p.E803K	ENST00000375023	NM_004557.3	803	Gag/Aag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342971	118342971	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	51	257	0	ENST00000534358.1:c.1097G>C	p.Arg366Thr	p.R366T	ENST00000534358	NM_005933.3	366	aGg/aCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445077	49445077	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	132	599	0	ENST00000301067.7:c.2389C>G	p.Leu797Val	p.L797V	ENST00000301067	NM_003482.3	797	Ctg/Gtg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445343	49445343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	191	913	0	ENST00000301067.7:c.2123C>T	p.Ser708Phe	p.S708F	ENST00000301067	NM_003482.3	708	tCc/tTc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437376	110437376	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776945626		P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	26	52	0	ENST00000375856.3:c.1025C>T	p.Ser342Leu	p.S342L	ENST00000375856	NM_003749.2	342	tCg/tTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713377	40713377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	111	662	0	ENST00000373198.4:c.4138G>A	p.Glu1380Lys	p.E1380K	ENST00000373198	NM_133170.3	1380	Gag/Aag																																																																															
SDHC	6391	MSKCC	GRCh37	1	161293444	161293444	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	110	525	0	ENST00000367975.2:c.61C>A	p.Gln21Lys	p.Q21K	ENST00000367975	NM_003001.3	21	Cag/Aag																																																																															
BIRC3	330	MSKCC	GRCh37	11	102201970	102201970	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	33	197	0	ENST00000263464.3:c.1322C>T	p.Ser441Leu	p.S441L	ENST00000263464	NM_001165.4	441	tCa/tTa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343074	118343074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	63	352	0	ENST00000534358.1:c.1200G>C	p.Lys400Asn	p.K400N	ENST00000534358	NM_005933.3	400	aaG/aaC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443919	49443919	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	165	702	0	ENST00000301067.7:c.3452C>G	p.Ser1151Cys	p.S1151C	ENST00000301067	NM_003482.3	1151	tCc/tGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445068	49445068	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	132	597	0	ENST00000301067.7:c.2398C>T	p.Gln800Ter	p.Q800*	ENST00000301067	NM_003482.3	800	Cag/Tag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061723	38061723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	21	296	0	ENST00000250448.2:c.266C>T	p.Ser89Leu	p.S89L	ENST00000250448	NM_004496.3	89	tCg/tTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983772	15983772	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	126	521	0	ENST00000268712.3:c.3350C>G	p.Ser1117Ter	p.S1117*	ENST00000268712	NM_006311.3	1117	tCa/tGa																																																																															
ALK	238	MSKCC	GRCh37	2	30143004	30143004	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	132	761	0	ENST00000389048.3:c.522C>G	p.Phe174Leu	p.F174L	ENST00000389048	NM_004304.4	174	ttC/ttG																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663163	227663163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	125	723	0	ENST00000305123.5:c.292G>A	p.Asp98Asn	p.D98N	ENST00000305123	NM_005544.2	98	Gac/Aac																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794369	242794369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	115	705	0	ENST00000334409.5:c.573C>G	p.Ile191Met	p.I191M	ENST00000334409	NM_005018.2	191	atC/atG																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24158956	24158956	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	96	609	0	ENST00000263121.7:c.629-1G>C		p.X210_splice	ENST00000263121	NM_003073.3	210																																																																																
RYBP	23429	MSKCC	GRCh37	3	72427764	72427764	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	72	338	0	ENST00000477973.2:c.724G>C	p.Arg242Ser	p.R242S	ENST00000477973	NM_012234.5	242	agG/agC																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31421411	31421411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	99	494	0	ENST00000344624.3:c.3493C>T	p.His1165Tyr	p.H1165Y	ENST00000344624		1165	Cat/Tat																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592087	67592087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	114	258	0	ENST00000274335.5:c.1903G>A	p.Glu635Lys	p.E635K	ENST00000274335		635	Gaa/Aaa																																																																															
CCND3	896	MSKCC	GRCh37	6	41908182	41908182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	138	812	1	ENST00000372991.4:c.340C>T	p.Arg114Cys	p.R114C	ENST00000372991	NM_001760.3	114	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877129	151877129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	109	479	0	ENST00000262189.6:c.7232C>T	p.Ser2411Leu	p.S2411L	ENST00000262189	NM_170606.2	2411	tCa/tTa																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15838400	15838400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	113	455	0	ENST00000307771.7:c.898G>A	p.Glu300Lys	p.E300K	ENST00000307771	NM_005089.3	300	Gaa/Aaa																																																																															
MED12	9968	MSKCC	GRCh37	X	70352707	70352707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	83	492	0	ENST00000374080.3:c.4428G>T	p.Leu1476Phe	p.L1476F	ENST00000374080		1476	ttG/ttT																																																																															
MED12	9968	MSKCC	GRCh37	X	70353006	70353006	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	137	609	0	ENST00000374080.3:c.4561G>C	p.Asp1521His	p.D1521H	ENST00000374080		1521	Gat/Cat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0036051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	116	359	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743515	46743516	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AT			P-0036051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	72	337	0	ENST00000371975.4:c.1896_1897delinsAT	p.Phe632_Gln633delinsLeuTer	p.F632_Q633delinsL*	ENST00000371975	NM_003579.3	632	ttCCag/ttATag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041349	47041349	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0036051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	96	227	0	ENST00000329236.7:c.1460-1G>C		p.X487_splice	ENST00000329236	NM_001204466.1	487																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	482	381	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0036053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	330	411	1	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423548	88423548	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	92	472	0	ENST00000360948.2:c.2287A>T	p.Ile763Phe	p.I763F	ENST00000360948	NM_001012338.2	763	Atc/Ttc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591930	48591930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	116	359	0	ENST00000342988.3:c.1093G>A	p.Gly365Ser	p.G365S	ENST00000342988	NM_005359.5	365	Ggt/Agt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31374393	31374393	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	48	337	0	ENST00000328111.2:c.392A>G	p.Asn131Ser	p.N131S	ENST00000328111	NM_006892.3	131	aAc/aGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	746	316	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057730	27057730	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	234	565	0	ENST00000324856.7:c.1438C>T	p.Gln480Ter	p.Q480*	ENST00000324856	NM_006015.4	480	Cag/Tag																																																																															
ETV6	2120	MSKCC	GRCh37	12	12006363	12006363	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	114	269	0	ENST00000396373.4:c.331G>A	p.Asp111Asn	p.D111N	ENST00000396373	NM_001987.4	111	Gat/Aat																																																																															
AXIN1	8312	MSKCC	GRCh37	16	339607	339607	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0036059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	53	359	0	ENST00000262320.3:c.2295G>C	p.Glu765Asp	p.E765D	ENST00000262320	NM_003502.3	765	gaG/gaC																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222997	5222997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	155	462	0	ENST00000357368.4:c.2806G>A	p.Glu936Lys	p.E936K	ENST00000357368	NM_002850.3	936	Gag/Aag																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702235	47702235	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	202	384	0	ENST00000233146.2:c.1831G>C	p.Val611Leu	p.V611L	ENST00000233146	NM_000251.2	611	Gtg/Ctg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31372595	31372595	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	149	333	0	ENST00000328111.2:c.236G>T	p.Gly79Val	p.G79V	ENST00000328111	NM_006892.3	79	gGg/gTg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808301	1808301	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	208	616	0	ENST00000260795.2:c.2059A>G	p.Ile687Val	p.I687V	ENST00000260795		687	Atc/Gtc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729711	41729711	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	128	378	1	ENST00000242208.4:c.818G>T	p.Gly273Val	p.G273V	ENST00000242208	NM_002192.2	273	gGc/gTc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742464	145742470	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCTGC	CCGCTGC	-			P-0036059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	240	581	0	ENST00000428558.2:c.318_324del	p.Gln107SerfsTer5	p.Q107Sfs*5	ENST00000428558	NM_004260.3	106	ggGCAGCGG/gg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53224470	53224470	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	191	502	0	ENST00000375401.3:c.3243G>C	p.Trp1081Cys	p.W1081C	ENST00000375401	NM_004187.3	1081	tgG/tgC																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226316	2226318	+	missense_variant	Missense_Mutation	ONP	GGG	GGG	TGT			P-0036059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	316	586	0	ENST00000326181.6:c.1929_1931delinsTGT	p.Gln643_Gly644delinsHisVal	p.Q643_G644delinsHV	ENST00000326181	NM_032271.2	643	caGGGc/caTGTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	73	469	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643430	38643434	+	frameshift_variant	Frame_Shift_Del	DEL	TAAGT	TAAGT	-			P-0036108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	82	561	0	ENST00000299084.4:c.906_910del	p.Leu302PhefsTer9	p.L302Ffs*9	ENST00000299084	NM_152594.2	300	acTAAGTta/acta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	66	597	0	ENST00000269305.4:c.580C>G	p.Leu194Val	p.L194V	ENST00000269305	NM_001126112.2	194	Ctt/Gtt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163791	47163792	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0036108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	64	519	0	ENST00000409792.3:c.2334_2335del	p.Val779Ter	p.V779*	ENST00000409792	NM_014159.6	778	ccAGtt/cctt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575049	48575083	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCTAGGTGGCTGGTCGGAAAGGATTTCCTCATG	TTTCTAGGTGGCTGGTCGGAAAGGATTTCCTCATG	-			P-0036108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	21	293	0	ENST00000342988.3:c.250-6_278del		p.X84_splice	ENST00000342988	NM_005359.5	84																																																																																
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0036109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	336	665	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
SMO	6608	MSKCC	GRCh37	7	128829066	128829066	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs41304185		P-0036109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	31	7	0	ENST00000249373.3:c.74A>G	p.Asp25Gly	p.D25G	ENST00000249373	NM_005631.4	25	gAc/gGc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41256906	41256906	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	265	617	1	ENST00000357654.3:c.280C>T	p.Gln94Ter	p.Q94*	ENST00000357654	NM_007294.3	94	Cag/Tag																																																																															
PRDM1	639	MSKCC	GRCh37	6	106543508	106543508	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0036109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	136	285	0	ENST00000369096.4:c.310A>T	p.Lys104Ter	p.K104*	ENST00000369096	NM_001198.3	104	Aaa/Taa																																																																															
TEK	7010	MSKCC	GRCh37	9	27158099	27158099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	183	528	0	ENST00000380036.4:c.323G>A	p.Gly108Glu	p.G108E	ENST00000380036	NM_000459.3	108	gGa/gAa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060573	38060573	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	27	767	0	ENST00000250448.2:c.1416delC	p.Ter473SerfsTer11	p.*473Sfs*11	ENST00000250448	NM_004496.3	472	tcC/tc																																																																															
STK11	6794	MSKCC	GRCh37	19	1218500	1218500	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0036112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	32	414	0	ENST00000326873.7:c.374+1A>G		p.X125_splice	ENST00000326873	NM_000455.4	125																																																																																
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	40	637	0	ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602611	10602611	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	50	683	1	ENST00000171111.5:c.967A>G	p.Lys323Glu	p.K323E	ENST00000171111	NM_203500.1	323	Aag/Gag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946798	71946798	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0036112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	32	684	0	ENST00000298229.2:c.2738+1G>T		p.X913_splice	ENST00000298229	NM_001567.3	913																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56481850	56481850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	32	659	1	ENST00000267101.3:c.778C>T	p.Pro260Ser	p.P260S	ENST00000267101	NM_001982.3	260	Cca/Tca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923831	72923831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	39	521	2	ENST00000268489.5:c.3247G>T	p.Gly1083Cys	p.G1083C	ENST00000268489	NM_006885.3	1083	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578281	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0036112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	17	642	1	ENST00000269305.4:c.568_569delinsAT	p.Pro190Ile	p.P190I	ENST00000269305	NM_001126112.2	190	CCt/ATt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131973853	131973853	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	24	346	0	ENST00000265335.6:c.3556G>T	p.Val1186Leu	p.V1186L	ENST00000265335		1186	Gtg/Ttg																																																																															
HGF	3082	MSKCC	GRCh37	7	81381478	81381478	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	21	353	1	ENST00000222390.5:c.583G>T	p.Glu195Ter	p.E195*	ENST00000222390	NM_000601.4	195	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	145	452	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604655	48604655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	69	325	0	ENST00000342988.3:c.1477G>A	p.Asp493Asn	p.D493N	ENST00000342988	NM_005359.5	493	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577128	7577128	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	110	610	0	ENST00000269305.4:c.810T>A	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	ttT/ttA																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971024	21971024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	115	533	0	ENST00000304494.5:c.334del	p.Arg112ValfsTer34	p.R112Vfs*34	ENST00000304494	NM_000077.4	112	Cgt/gt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	155	412	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	52	630	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856506	111856506	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs183913232		P-0036085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	11	221	1	ENST00000341259.2:c.557G>T	p.Ser186Ile	p.S186I	ENST00000341259	NM_005475.2	186	aGc/aTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628707	187628707	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	47	712	0	ENST00000441802.2:c.2275G>T	p.Gly759Ter	p.G759*	ENST00000441802	NM_005245.3	759	Gga/Tga																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876425	35876425	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	41	601	2	ENST00000303115.3:c.1217T>G	p.Leu406Arg	p.L406R	ENST00000303115	NM_002185.3	406	cTt/cGt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11317085	11317085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	51	590	1	ENST00000361445.4:c.409G>A	p.Gly137Arg	p.G137R	ENST00000361445	NM_004958.3	137	Ggg/Agg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599954	28599954	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	25	697	0	ENST00000253063.3:c.836C>G	p.Ser279Cys	p.S279C	ENST00000253063	NM_031459.4	279	tCc/tGc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241857	72241857	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0036085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	25	294	0	ENST00000357731.5:c.533C>A	p.Ser178Ter	p.S178*	ENST00000357731	NM_173808.2	178	tCa/tAa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828121	243828122	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0036085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	16	537	1	ENST00000263826.5:c.236_237delinsAA	p.Trp79Ter	p.W79*	ENST00000263826	NM_005465.4	79	tGG/tAA																																																																															
PGR	5241	MSKCC	GRCh37	11	100933385	100933385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	44	544	0	ENST00000325455.5:c.2005C>A	p.Leu669Ile	p.L669I	ENST00000325455	NM_001202474.3	669	Cta/Ata																																																																															
DIS3	22894	MSKCC	GRCh37	13	73336187	73336187	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	27	222	0	ENST00000377767.4:c.2216T>C	p.Leu739Pro	p.L739P	ENST00000377767	NM_014953.3	739	cTg/cCg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920391	134920391	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	50	540	0	ENST00000398015.3:c.2206G>T	p.Ala736Ser	p.A736S	ENST00000398015	NM_004441.4	736	Gct/Tct																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980508	70980508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	81	728	1	ENST00000276594.2:c.869C>A	p.Ala290Asp	p.A290D	ENST00000276594	NM_024504.3	290	gCc/gAc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53253992	53253992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	21	625	0	ENST00000375401.3:c.80C>T	p.Pro27Leu	p.P27L	ENST00000375401	NM_004187.3	27	cCt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0036087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	266	705	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	62	508	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0036087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	51	598	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	86	619	1	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637539	52637540	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	34	491	0	ENST00000394830.3:c.2776dup	p.Arg926LysfsTer4	p.R926Kfs*4	ENST00000394830	NM_018313.4	926	aga/aAga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099108	27099109	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	145	413	0	ENST00000324856.7:c.3525dup	p.Leu1176IlefsTer17	p.L1176Ifs*17	ENST00000324856	NM_006015.4	1175	cca/ccAa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2185874	2185874	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	81	664	1	ENST00000398665.3:c.146C>A	p.Pro49Gln	p.P49Q	ENST00000398665	NM_032482.2	49	cCg/cAg																																																																															
AKT2	208	MSKCC	GRCh37	19	40747910	40747910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	228	726	0	ENST00000392038.2:c.508C>T	p.Arg170Trp	p.R170W	ENST00000392038	NM_001626.4	170	Cgg/Tgg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966088	25966088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	94	708	0	ENST00000435504.4:c.3118T>C	p.Ser1040Pro	p.S1040P	ENST00000435504		1040	Tca/Cca																																																																															
APC	324	MSKCC	GRCh37	5	112173848	112173849	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0036087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	92	337	0	ENST00000257430.4:c.2563_2564del	p.Glu855ThrfsTer56	p.E855Tfs*56	ENST00000257430	NM_000038.5	853	GAg/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	38	418	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	34	622	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0036093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	70	532	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0036093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	28	607	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578429	7578430	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0036093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	77	851	0	ENST00000269305.4:c.499_500dup	p.Gln167HisfsTer4	p.Q167Hfs*4	ENST00000269305	NM_001126112.2	167	cag/caCAg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738074	145738074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	43	865	3	ENST00000428558.2:c.2836C>T	p.Arg946Cys	p.R946C	ENST00000428558	NM_004260.3	946	Cgt/Tgt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852482	63852483	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	43	584	0	ENST00000279873.7:c.3261dup	p.Asn1088Ter	p.N1088*	ENST00000279873	NM_032199.2	1087	tgt/tgTt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864144	57864144	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	72	674	0	ENST00000228682.2:c.1621C>A	p.Arg541Ser	p.R541S	ENST00000228682	NM_005269.2	541	Cgc/Agc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370874	55370874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	85	685	0	ENST00000297316.4:c.176C>T	p.Ala59Val	p.A59V	ENST00000297316	NM_022454.3	59	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0036094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	9	524	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0036094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	44	726	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861886	57861886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	35	536	1	ENST00000228682.2:c.1187G>A	p.Arg396Gln	p.R396Q	ENST00000228682	NM_005269.2	396	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	57	446	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0036096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	21	191	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745588	162745588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	56	446	1	ENST00000367921.3:c.2003G>A	p.Arg668His	p.R668H	ENST00000367921	NM_006182.2	668	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173964	112173968	+	frameshift_variant	Frame_Shift_Del	DEL	GGAAG	GGAAG	-			P-0036096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	38	293	2	ENST00000257430.4:c.2673_2677del	p.Met891IlefsTer19	p.M891Ifs*19	ENST00000257430	NM_000038.5	891	atGGAAGaa/ataa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635201	87635201	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	79	475	0	ENST00000277120.3:c.2253C>A	p.Asp751Glu	p.D751E	ENST00000277120		751	gaC/gaA																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120527	70120527	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0036126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	56	714	0	ENST00000245479.2:c.1529G>C	p.Ter510SerextTer49	p.*510Sext*49	ENST00000245479	NM_000346.3	510	tGa/tCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	388	755	0	ENST00000269305.4:c.470T>G	p.Val157Gly	p.V157G	ENST00000269305	NM_001126112.2	157	gTc/gGc																																																																															
RB1	5925	MSKCC	GRCh37	13	48955538	48955538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	89	391	0	ENST00000267163.4:c.1654C>T	p.Arg552Ter	p.R552*	ENST00000267163	NM_000321.2	552	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692793	89692793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	97	374	0	ENST00000371953.3:c.277C>T	p.His93Tyr	p.H93Y	ENST00000371953	NM_000314.4	93	Cat/Tat																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233341	69233343	+	frameshift_variant	Frame_Shift_Del	DEL	GCC	GCC	A			P-0036126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	17	283	0	ENST00000462284.1:c.1206_1208delinsA	p.Pro403IlefsTer4	p.P403Ifs*4	ENST00000462284	NM_002392.5	402	caGCCa/caAa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727482	88727482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	28	681	0	ENST00000360948.2:c.297G>A	p.Met99Ile	p.M99I	ENST00000360948	NM_001012338.2	99	atG/atA																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3794916	3794916	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	42	623	0	ENST00000262367.5:c.3961G>C	p.Glu1321Gln	p.E1321Q	ENST00000262367	NM_004380.2	1321	Gaa/Caa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916214	9916214	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	18	564	0	ENST00000330684.3:c.2075G>C	p.Arg692Thr	p.R692T	ENST00000330684	NM_001134407.1	692	aGa/aCa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271535	38271535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	24	759	0	ENST00000425967.3:c.2286G>A	p.Met762Ile	p.M762I	ENST00000425967	NM_001174067.1	762	atG/atA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	88	501	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0036130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	131	768	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	101	602	0	ENST00000342988.3:c.1081C>A	p.Arg361Ser	p.R361S	ENST00000342988	NM_005359.5	361	Cgc/Agc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438169	56438169	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	136	884	0	ENST00000407977.2:c.824G>C	p.Cys275Ser	p.C275S	ENST00000407977		275	tGt/tCt																																																																															
IRF4	3662	MSKCC	GRCh37	6	401499	401499	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	30	359	0	ENST00000380956.4:c.821G>C	p.Cys274Ser	p.C274S	ENST00000380956	NM_001195286.1	274	tGc/tCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0036134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	85	686	1	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	394	1019	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0036134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	144	291	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs926053251		P-0036134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	200	625	1	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																																																															
INHA	3623	MSKCC	GRCh37	2	220439778	220439778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	291	968	0	ENST00000243786.2:c.631G>A	p.Ala211Thr	p.A211T	ENST00000243786	NM_002191.3	211	Gcc/Acc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125514129	125514129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	72	639	0	ENST00000428830.2:c.1067A>G	p.Asn356Ser	p.N356S	ENST00000428830	NM_001114121.2	356	aAt/aGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	198	570	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563033	21563033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	98	1024	0	ENST00000382592.4:c.886G>A	p.Gly296Arg	p.G296R	ENST00000382592	NM_014572.2	296	Gga/Aga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828222	72828222	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	41	804	0	ENST00000268489.5:c.8359C>A	p.Pro2787Thr	p.P2787T	ENST00000268489	NM_006885.3	2787	Cct/Act																																																																															
BRCA1	672	MSKCC	GRCh37	17	41276086	41276086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	51	666	0	ENST00000357654.3:c.28G>A	p.Glu10Lys	p.E10K	ENST00000357654	NM_007294.3	10	Gaa/Aaa																																																																															
NF2	4771	MSKCC	GRCh37	22	30038274	30038274	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0036008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	30	495	0	ENST00000338641.4:c.447G>C	p.Lys149Asn	p.K149N	ENST00000338641	NM_000268.3	149	aaG/aaC																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185161283	185161283	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	64	913	0	ENST00000265026.3:c.710C>G	p.Ala237Gly	p.A237G	ENST00000265026	NM_004721.4	237	gCc/gGc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748173	41748173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	51	753	0	ENST00000226382.2:c.596G>T	p.Gly199Val	p.G199V	ENST00000226382	NM_003924.3	199	gGt/gTt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508092	106508092	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	28	254	0	ENST00000359195.3:c.86C>G	p.Ala29Gly	p.A29G	ENST00000359195	NM_002649.2	29	gCg/gGg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209643	98209643	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	55	669	0	ENST00000331920.6:c.3895G>T	p.Gly1299Cys	p.G1299C	ENST00000331920	NM_000264.3	1299	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0036001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	177	523	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46511750	46511750	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	168	490	0	ENST00000262741.5:c.1027A>G	p.Ile343Val	p.I343V	ENST00000262741	NM_003629.3	343	Atc/Gtc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739902	145739902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	47	521	1	ENST00000428558.2:c.1628G>A	p.Gly543Asp	p.G543D	ENST00000428558	NM_004260.3	543	gGc/gAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0036002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	33	477	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576857	7576857	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032859-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			627	107	668	0	ENST00000269305.4:c.989T>G	p.Leu330Arg	p.L330R	ENST00000269305	NM_001126112.2	330	cTt/cGt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89335055	89335055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032859-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			354	41	406	0	ENST00000301030.4:c.7823G>A	p.Arg2608Gln	p.R2608Q	ENST00000301030	NM_001256183.1	2608	cGg/cAg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64132776	64132776	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032859-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			630	51	582	0	ENST00000334205.4:c.910C>A	p.Leu304Ile	p.L304I	ENST00000334205	NM_003942.2	304	Ctc/Atc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441813	49441813	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032859-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			601	52	535	0	ENST00000301067.7:c.4171G>C	p.Glu1391Gln	p.E1391Q	ENST00000301067	NM_003482.3	1391	Gag/Cag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100050	30100050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032859-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			685	86	807	0	ENST00000331968.5:c.1570G>A	p.Val524Ile	p.V524I	ENST00000331968	NM_002742.2	524	Gtt/Att																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11106922	11106922	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032859-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			703	70	771	0	ENST00000344626.4:c.1627G>C	p.Asp543His	p.D543H	ENST00000344626	NM_003072.3	543	Gac/Cac																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004475	150004475	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032859-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			659	44	652	0	ENST00000253339.5:c.1750C>T	p.Gln584Ter	p.Q584*	ENST00000253339		584	Cag/Tag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522305	157522305	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032859-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			773	83	776	1	ENST00000346085.5:c.4577C>G	p.Ser1526Ter	p.S1526*	ENST00000346085	NM_020732.3	1526	tCa/tGa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259448	55259448	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032859-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			479	41	433	0	ENST00000275493.2:c.2506C>G	p.Arg836Gly	p.R836G	ENST00000275493	NM_005228.3	836	Cgc/Ggc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401047	139401047	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032859-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			829	158	934	0	ENST00000277541.6:c.3946T>G	p.Cys1316Gly	p.C1316G	ENST00000277541	NM_017617.3	1316	Tgc/Ggc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0036006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	161	686	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	208	495	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920402	114920402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	101	511	1	ENST00000543371.1:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000543371	NM_001198531.1	448	cGg/cAg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879794	37879794	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	97	478	0	ENST00000269571.5:c.2089G>T	p.Val697Leu	p.V697L	ENST00000269571		697	Gtg/Ttg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	25	403	0	ENST00000397062.3:c.100C>T	p.Arg34Ter	p.R34*	ENST00000397062	NM_006164.4	34	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591102	67591113	+	inframe_deletion	In_Frame_Del	DEL	CATTAAACCAGA	CATTAAACCAGA	-			P-0036006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	48	300	0	ENST00000274335.5:c.1696_1707del	p.Ile566_Asp569del	p.I566_D569del	ENST00000274335		565	agCATTAAACCAGAc/agc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241872	72241872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	87	314	0	ENST00000357731.5:c.518G>A	p.Arg173Gln	p.R173Q	ENST00000357731	NM_173808.2	173	cGa/cAa																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257169	19257169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	119	541	0	ENST00000162023.5:c.794C>A	p.Pro265Gln	p.P265Q	ENST00000162023		265	cCg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175411	112175412	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AACA			P-0036006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	53	280	0	ENST00000257430.4:c.4121_4124dup	p.His1375GlnfsTer12	p.H1375Qfs*12	ENST00000257430	NM_000038.5	1374	gaa/gAACAaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	23	502	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0036010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	55	822	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112891035	112891035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	23	372	0	ENST00000351677.2:c.369G>T	p.Glu123Asp	p.E123D	ENST00000351677	NM_002834.3	123	gaG/gaT																																																																															
ATM	472	MSKCC	GRCh37	11	108186757	108186757	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	31	460	0	ENST00000278616.4:c.6115G>T	p.Glu2039Ter	p.E2039*	ENST00000278616	NM_000051.3	2039	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	186	908	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	108	424	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945033	31945033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	189	1003	1	ENST00000340398.3:c.68C>T	p.Thr23Met	p.T23M	ENST00000340398	NM_001013699.2	23	aCg/aTg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929412	44929415	+	frameshift_variant	Frame_Shift_Del	DEL	ACAA	ACAA	-			P-0036012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	155	360	0	ENST00000377967.4:c.2515_2518del	p.Asn839ValfsTer27	p.N839Vfs*27	ENST00000377967	NM_021140.2	838	ACAAac/ac																																																																															
APC	324	MSKCC	GRCh37	5	112155032	112155032	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	131	534	0	ENST00000257430.4:c.1307del	p.Asn436IlefsTer18	p.N436Ifs*18	ENST00000257430	NM_000038.5	435	Aaa/aa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11107210	11107210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	192	657	0	ENST00000344626.4:c.1802C>T	p.Pro601Leu	p.P601L	ENST00000344626	NM_003072.3	601	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	32	461	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194859	29194859	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	58	931	1	ENST00000240100.2:c.869T>A	p.Ile290Asn	p.I290N	ENST00000240100	NM_001394.6	290	aTc/aAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0036023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	471	640	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0036023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	591	819	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0036023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	162	365	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	477	480	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906331	50906331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	349	807	0	ENST00000440232.2:c.992G>A	p.Arg331Gln	p.R331Q	ENST00000440232	NM_002691.3	331	cGg/cAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	90	616	3	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	91	623	1	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	219	646	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	38	942	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332337	70332337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	193	528	0	ENST00000373644.4:c.242G>A	p.Arg81His	p.R81H	ENST00000373644	NM_030625.2	81	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	453	835	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589610	67589612	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	54	260	0	ENST00000274335.5:c.1376_1378delAAA	p.Lys459del	p.K459del	ENST00000274335		458	gAAAaa/gaa																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	105	659	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
ALK	238	MSKCC	GRCh37	2	30143383	30143383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	89	692	0	ENST00000389048.3:c.143G>A	p.Arg48His	p.R48H	ENST00000389048	NM_004304.4	48	cGc/cAc																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	121	434	5	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913294		P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	79	670	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	136	767	5	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	187	673	8	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	141	987	4	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468185	120468185	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	260	739	3	ENST00000256646.2:c.4254delC	p.Ser1419AlafsTer8	p.S1419Afs*8	ENST00000256646	NM_024408.3	1418	ccC/cc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	204	578	14	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907421	32907421	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	71	339	5	ENST00000380152.3:c.1813delA	p.Ile605TyrfsTer9	p.I605Yfs*9	ENST00000380152		602	ggA/gg																																																																															
CD276	80381	MSKCC	GRCh37	15	73994854	73994854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	33	126	0	ENST00000318443.5:c.338G>A	p.Arg113His	p.R113H	ENST00000318443	NM_001024736.1	113	cGt/cAt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508725	106508725	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	228	607	0	ENST00000359195.3:c.723del	p.Gly242AlafsTer17	p.G242Afs*17	ENST00000359195	NM_002649.2	240	aCc/ac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962854	2962854	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	89	884	2	ENST00000396946.4:c.2054delG	p.Gly685AlafsTer31	p.G685Afs*31	ENST00000396946	NM_032415.4	685	gGc/gc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199945	138199945	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	136	480	0	ENST00000237289.4:c.1368delG	p.Pro457LeufsTer20	p.P457Lfs*20	ENST00000237289	NM_001270507.1	455	Ggg/gg																																																																															
BBC3	27113	MSKCC	GRCh37	19	47725018	47725019	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	355	967	0	ENST00000449228.1:c.725dupG	p.Arg243GlnfsTer7	p.R243Qfs*7	ENST00000449228	NM_001127240.2	242	ggc/ggGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100312	27100312	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	295	847	2	ENST00000324856.7:c.4024C>T	p.Gln1342Ter	p.Q1342*	ENST00000324856	NM_006015.4	1342	Cag/Tag																																																																															
B2M	567	MSKCC	GRCh37	15	45007741	45007742	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	61	497	0	ENST00000558401.1:c.194_195delGA	p.Arg65AsnfsTer2	p.R65Nfs*2	ENST00000558401	NM_004048.2	63	gGA/g																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	360	880	5	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	184	514	4	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739691	145739691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	263	799	1	ENST00000428558.2:c.1760C>T	p.Ala587Val	p.A587V	ENST00000428558	NM_004260.3	587	gCg/gTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509927	187509927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	63	451	1	ENST00000441802.2:c.13586C>T	p.Ala4529Val	p.A4529V	ENST00000441802	NM_005245.3	4529	gCg/gTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851591	134851591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	210	659	0	ENST00000398015.3:c.997G>A	p.Val333Ile	p.V333I	ENST00000398015	NM_004441.4	333	Gtc/Atc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250244	110250244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	239	832	0	ENST00000374672.4:c.431C>T	p.Ala144Val	p.A144V	ENST00000374672	NM_004235.4	144	gCg/gTg																																																																															
ATR	545	MSKCC	GRCh37	3	142176560	142176560	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151162347		P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	129	560	0	ENST00000350721.4:c.7541G>A	p.Arg2514His	p.R2514H	ENST00000350721	NM_001184.3	2514	cGc/cAc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78857228	78857228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	125	801	0	ENST00000306801.3:c.1594C>T	p.Arg532Trp	p.R532W	ENST00000306801	NM_020761.2	532	Cgg/Tgg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133981	38133981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	287	859	0	ENST00000317025.8:c.3905del	p.Asn1302MetfsTer4	p.N1302Mfs*4	ENST00000317025	NM_023034.1	1302	aAt/at																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376248	15376248	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	144	613	2	ENST00000263377.2:c.766delC	p.Gln256SerfsTer27	p.Q256Sfs*27	ENST00000263377	NM_058243.2	256	Cag/ag																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78519468	78519468	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	67	555	0	ENST00000306801.3:c.43del	p.Glu15ArgfsTer17	p.E15Rfs*17	ENST00000306801	NM_020761.2	13	ctG/ct																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517474	176517474	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200344385		P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	172	936	1	ENST00000292408.4:c.175C>T	p.Arg59Trp	p.R59W	ENST00000292408	NM_213647.1	59	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228761	36228761	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	273	881	1	ENST00000222270.7:c.7660C>T	p.Arg2554Cys	p.R2554C	ENST00000222270	NM_014727.1	2554	Cgt/Tgt																																																																															
FH	2271	MSKCC	GRCh37	1	241661204	241661204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	98	847	1	ENST00000366560.3:c.1457C>T	p.Ala486Val	p.A486V	ENST00000366560	NM_000143.3	486	gCt/gTt																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199861	138199861	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	106	522	0	ENST00000237289.4:c.1279C>A	p.Pro427Thr	p.P427T	ENST00000237289	NM_001270507.1	427	Cct/Act																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099117	27099117	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	162	411	0	ENST00000324856.7:c.3533G>T	p.Gly1178Val	p.G1178V	ENST00000324856	NM_006015.4	1178	gGc/gTc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845423	156845423	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	367	1027	0	ENST00000524377.1:c.1466A>G	p.His489Arg	p.H489R	ENST00000524377	NM_002529.3	489	cAc/cGc																																																																															
TET1	80312	MSKCC	GRCh37	10	70405043	70405043	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	163	645	2	ENST00000373644.4:c.2557G>T	p.Gly853Cys	p.G853C	ENST00000373644	NM_030625.2	853	Ggt/Tgt																																																																															
TET1	80312	MSKCC	GRCh37	10	70451534	70451535	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	307	813	2	ENST00000373644.4:c.6380_6381dup	p.Val2128ThrfsTer53	p.V2128Tfs*53	ENST00000373644	NM_030625.2	2125	ctc/ctCAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420067	49420067	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	60	742	0	ENST00000301067.7:c.15682T>C	p.Tyr5228His	p.Y5228H	ENST00000301067	NM_003482.3	5228	Tat/Cat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49422959	49422959	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	287	845	0	ENST00000301067.7:c.14136G>T	p.Glu4712Asp	p.E4712D	ENST00000301067	NM_003482.3	4712	gaG/gaT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427680	49427682	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	164	722	0	ENST00000301067.7:c.10806_10808del	p.Gln3612del	p.Q3612del	ENST00000301067	NM_003482.3	3602	caACAg/cag																																																																															
MSI1	4440	MSKCC	GRCh37	12	120806636	120806636	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	164	282	0	ENST00000257552.2:c.100G>T	p.Glu34Ter	p.E34*	ENST00000257552	NM_002442.3	34	Gaa/Taa																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68353790	68353790	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	76	491	0	ENST00000487270.1:c.625C>A	p.Leu209Ile	p.L209I	ENST00000487270	NM_133509.3	209	Ctt/Att																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43705382	43705382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	95	1072	0	ENST00000382044.4:c.5240G>A	p.Ser1747Asn	p.S1747N	ENST00000382044	NM_001141980.1	1747	aGt/aAt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2131672	2131672	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	137	964	0	ENST00000219476.3:c.3687G>T	p.Gln1229His	p.Q1229H	ENST00000219476	NM_000548.3	1229	caG/caT																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632378	3632378	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	137	1068	0	ENST00000294008.3:c.5470C>T	p.Gln1824Ter	p.Q1824*	ENST00000294008	NM_032444.2	1824	Cag/Tag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641113	3641113	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	498	1337	1	ENST00000294008.3:c.2526T>G	p.Asp842Glu	p.D842E	ENST00000294008	NM_032444.2	842	gaT/gaG																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349260	11349260	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	140	339	0	ENST00000332029.2:c.76T>C	p.Ser26Pro	p.S26P	ENST00000332029	NM_003745.1	26	Tcc/Ccc																																																																															
CDH1	999	MSKCC	GRCh37	16	68853308	68853308	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	243	623	0	ENST00000261769.5:c.1691T>C	p.Leu564Pro	p.L564P	ENST00000261769	NM_004360.3	564	cTa/cCa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217874	2217874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	120	1045	0	ENST00000398665.3:c.2648T>C	p.Ile883Thr	p.I883T	ENST00000398665	NM_032482.2	883	aTt/aCt																																																																															
INSR	3643	MSKCC	GRCh37	19	7184573	7184573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	137	511	0	ENST00000302850.5:c.728G>A	p.Cys243Tyr	p.C243Y	ENST00000302850	NM_000208.2	243	tGt/tAt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15295228	15295228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	421	1134	3	ENST00000263388.2:c.2444C>T	p.Ala815Val	p.A815V	ENST00000263388	NM_000435.2	815	gCt/gTt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311605	15311605	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1445073298		P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	42	111	0	ENST00000263388.2:c.112del	p.Ala38LeufsTer198	p.A38Lfs*198	ENST00000263388	NM_000435.2	38	Gct/ct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214812	36214812	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1014637026		P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	239	793	0	ENST00000222270.7:c.3238G>A	p.Val1080Ile	p.V1080I	ENST00000222270	NM_014727.1	1080	Gtc/Atc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31511249	31511249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	316	967	1	ENST00000344624.3:c.1325G>A	p.Arg442His	p.R442H	ENST00000344624		442	cGt/cAt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515636	31515636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	160	564	0	ENST00000344624.3:c.983G>A	p.Gly328Glu	p.G328E	ENST00000344624		328	gGa/gAa																																																																															
MSH3	4437	MSKCC	GRCh37	5	80063767	80063769	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	135	495	0	ENST00000265081.6:c.1917_1919del	p.Phe639del	p.F639del	ENST00000265081	NM_002439.4	638	TTC/-																																																																															
APC	324	MSKCC	GRCh37	5	112162856	112162856	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	145	562	0	ENST00000257430.4:c.1460G>T	p.Gly487Val	p.G487V	ENST00000257430	NM_000038.5	487	gGg/gTg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671699	30671699	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	274	823	0	ENST00000376406.3:c.5261G>T	p.Arg1754Met	p.R1754M	ENST00000376406	NM_014641.2	1754	aGg/aTg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324073	31324073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	43	306	0	ENST00000412585.2:c.490G>A	p.Ala164Thr	p.A164T	ENST00000412585	NM_005514.6	164	Gct/Act																																																																															
STK19	8859	MSKCC	GRCh37	6	31947212	31947212	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	328	760	0	ENST00000375331.2:c.685C>T	p.Arg229Ter	p.R229*	ENST00000375331	NM_004197.1	229	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140434521	140434521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	103	384	0	ENST00000288602.6:c.2177G>A	p.Arg726His	p.R726H	ENST00000288602	NM_004333.4	726	cGc/cAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945103	151945103	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	48	742	0	ENST00000262189.6:c.2416T>C	p.Ser806Pro	p.S806P	ENST00000262189	NM_170606.2	806	Tcc/Ccc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69005900	69005900	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	203	677	0	ENST00000288368.4:c.2311T>C	p.Ser771Pro	p.S771P	ENST00000288368	NM_024870.2	771	Tct/Cct																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739319	145739319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	45	848	0	ENST00000428558.2:c.2051C>T	p.Thr684Ile	p.T684I	ENST00000428558	NM_004260.3	684	aCa/aTa																																																																															
TEK	7010	MSKCC	GRCh37	9	27220097	27220097	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	320	740	0	ENST00000380036.4:c.3157del	p.Gln1053ArgfsTer9	p.Q1053Rfs*9	ENST00000380036	NM_000459.3	1052	Ccc/cc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402544	139402544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	363	945	2	ENST00000277541.6:c.3373G>A	p.Ala1125Thr	p.A1125T	ENST00000277541	NM_017617.3	1125	Gcg/Acg																																																																															
AR	367	MSKCC	GRCh37	X	66931346	66931346	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	109	651	0	ENST00000374690.3:c.1988C>A	p.Ser663Ter	p.S663*	ENST00000374690	NM_000044.3	663	tCa/tAa																																																																															
ATRX	546	MSKCC	GRCh37	X	76763976	76763976	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	306	865	0	ENST00000373344.5:c.7332G>C	p.Leu2444Phe	p.L2444F	ENST00000373344	NM_000489.3	2444	ttG/ttC																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266714	198266714	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	43	495	0	ENST00000335508.6:c.2218G>C	p.Gly740Arg	p.G740R	ENST00000335508	NM_012433.2	740	Gga/Cga																																																																															
BRAF	673	MSKCC	GRCh37	7	140476833	140476833	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	30	673	0	ENST00000288602.6:c.1573C>G	p.Leu525Val	p.L525V	ENST00000288602	NM_004333.4	525	Ctg/Gtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0036032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	68	627	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78820364	78820364	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	56	748	0	ENST00000306801.3:c.1304T>C	p.Ile435Thr	p.I435T	ENST00000306801	NM_020761.2	435	aTc/aCc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47142948	47142948	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	40	401	0	ENST00000409792.3:c.5015G>A	p.Gly1672Glu	p.G1672E	ENST00000409792	NM_014159.6	1672	gGa/gAa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045540	47045581	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGAAGTACGGCGGCATATCCACAGCCTCTGTGTGAGTGGCTG	GGAAGTACGGCGGCATATCCACAGCCTCTGTGTGAGTGGCTG	-			P-0036032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	37	733	0	ENST00000329236.7:c.2275_2303+13del		p.X759_splice	ENST00000329236	NM_001204466.1	759																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	239	830	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0036033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	190	675	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
B2M	567	MSKCC	GRCh37	15	45007711	45007711	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	69	508	0	ENST00000558401.1:c.158C>A	p.Ser53Tyr	p.S53Y	ENST00000558401	NM_004048.2	53	tCc/tAc																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22153321	22153321	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	173	524	0	ENST00000215832.6:c.589G>C	p.Glu197Gln	p.E197Q	ENST00000215832	NM_002745.4	197	Gaa/Caa																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645789	12645789	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0036033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	47	373	0	ENST00000251849.4:c.681-1G>C		p.X227_splice	ENST00000251849	NM_002880.3	227																																																																																
RICTOR	253260	MSKCC	GRCh37	5	38955776	38955776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	44	430	0	ENST00000357387.3:c.2530G>A	p.Glu844Lys	p.E844K	ENST00000357387	NM_152756.3	844	Gag/Aag																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73113186	73113186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	10	102	0	ENST00000356692.5:c.527C>T	p.Pro176Leu	p.P176L	ENST00000356692		176	cCa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579349	7579349	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	253	714	0	ENST00000269305.4:c.338T>G	p.Phe113Cys	p.F113C	ENST00000269305	NM_001126112.2	113	tTc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0036035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	100	303	0	ENST00000257430.4:c.4128T>A	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taA																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870778	12870778	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	46	106	0	ENST00000228872.4:c.5C>A	p.Ser2Ter	p.S2*	ENST00000228872	NM_004064.3	2	tCa/tAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906957	32906957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	317	403	0	ENST00000380152.3:c.1342C>T	p.Arg448Cys	p.R448C	ENST00000380152		448	Cgt/Tgt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89838148	89838148	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	242	685	0	ENST00000389301.3:c.2089G>T	p.Val697Phe	p.V697F	ENST00000389301	NM_000135.2	697	Gtt/Ttt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5219479	5219479	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0036035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	196	635	0	ENST00000357368.4:c.3766-1G>C		p.X1256_splice	ENST00000357368	NM_002850.3	1256																																																																																
APC	324	MSKCC	GRCh37	5	112173696	112173696	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	172	341	0	ENST00000257430.4:c.2405del	p.Asp802AlafsTer18	p.D802Afs*18	ENST00000257430	NM_000038.5	802	gAc/gc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	311	519	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831201	72831201	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	229	441	0	ENST00000268489.5:c.5380C>T	p.Gln1794Ter	p.Q1794*	ENST00000268489	NM_006885.3	1794	Cag/Tag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061211	38061211	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	806	496	0	ENST00000250448.2:c.778T>G	p.Leu260Val	p.L260V	ENST00000250448	NM_004496.3	260	Ttg/Gtg																																																																															
ATRX	546	MSKCC	GRCh37	X	76954101	76954122	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAACCACTGATTTTATCTAAA	AGAACCACTGATTTTATCTAAA	-			P-0035765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	401	224	0	ENST00000373344.5:c.134-5_150del		p.X45_splice	ENST00000373344	NM_000489.3	45																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0035962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	165	857	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	92	605	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517202		P-0035962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	92	539	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0035962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	159	378	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045136	47045136	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	317	360	0	ENST00000329236.7:c.2143C>T	p.Arg715Ter	p.R715*	ENST00000329236	NM_001204466.1	715	Cga/Tga																																																																															
FLT1	2321	MSKCC	GRCh37	13	28931822	28931822	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0035964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	88	421	0	ENST00000282397.4:c.2117del	p.Gly706GlufsTer4	p.G706Efs*4	ENST00000282397	NM_002019.4	706	gGa/ga																																																																															
MGA	23269	MSKCC	GRCh37	15	41988430	41988430	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	140	601	0	ENST00000219905.7:c.1222G>C	p.Asp408His	p.D408H	ENST00000219905	NM_001164273.1	408	Gat/Cat																																																																															
CDH1	999	MSKCC	GRCh37	16	68853197	68853197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	112	564	0	ENST00000261769.5:c.1580G>A	p.Arg527Lys	p.R527K	ENST00000261769	NM_004360.3	527	aGa/aAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828513	72828513	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	37	867	0	ENST00000268489.5:c.8068C>T	p.Gln2690Ter	p.Q2690*	ENST00000268489	NM_006885.3	2690	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	1011	635	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653824	89653824	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	195	545	0	ENST00000371953.3:c.122G>C	p.Arg41Thr	p.R41T	ENST00000371953	NM_000314.4	41	aGa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579304	7579322	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAACTGACCGTGCAAGTCA	CAACTGACCGTGCAAGTCA	-			P-0035973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	152	497	0	ENST00000269305.4:c.365_375+8del		p.X122_splice	ENST00000269305	NM_001126112.2	122																																																																																
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0002372-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			372	195	433	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002372-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			87	63	219	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TOP1	7150	MSKCC	GRCh37	20	39742679	39742679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002372-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			335	166	355	0	ENST00000361337.2:c.1522C>T	p.Arg508Cys	p.R508C	ENST00000361337	NM_003286.2	508	Cgt/Tgt																																																																															
RYBP	23429	MSKCC	GRCh37	3	72428573	72428573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002372-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	151	335	0	ENST00000477973.2:c.429C>T	p.Pro144Leu	p.P144L	ENST00000477973	NM_012234.5	144	cCt/cTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0035244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	92	307	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221821	55221821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	121	397	0	ENST00000275493.2:c.865G>A	p.Ala289Thr	p.A289T	ENST00000275493	NM_005228.3	289	Gcc/Acc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861786	57861786	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	33	330	0	ENST00000228682.2:c.1087G>T	p.Val363Leu	p.V363L	ENST00000228682	NM_005269.2	363	Gta/Tta																																																																															
CDK8	1024	MSKCC	GRCh37	13	26923264	26923264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	33	304	0	ENST00000381527.3:c.260C>T	p.Ser87Phe	p.S87F	ENST00000381527	NM_001260.1	87	tCt/tTt																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858095	152858095	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	103	412	0	ENST00000406277.2:c.520G>C	p.Asp174His	p.D174H	ENST00000406277	NM_152274.4	174	Gac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0035769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	119	674	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0035769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	625	487	1	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949157	71949157	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	114	822	0	ENST00000298229.2:c.3624C>G	p.Ile1208Met	p.I1208M	ENST00000298229	NM_001567.3	1208	atC/atG																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291097	10291097	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	40	758	0	ENST00000340748.4:c.374C>G	p.Ala125Gly	p.A125G	ENST00000340748		125	gCc/gGc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375213	15375213	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0035769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	56	511	0	ENST00000263377.2:c.1212+2T>G		p.X404_splice	ENST00000263377	NM_058243.2	404																																																																																
RTEL1	51750	MSKCC	GRCh37	20	62319707	62319707	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	111	856	0	ENST00000508582.2:c.1762C>A	p.Pro588Thr	p.P588T	ENST00000508582		588	Cct/Act																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061218	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCCGTTCTCGAACATGTT	GCCGTTCTCGAACATGTT	-			P-0035807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	315	551	0	ENST00000250448.2:c.754_771del	p.Asn252_Gly257del	p.N252_G257del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGC/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578507	7578507	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	365	674	0	ENST00000269305.4:c.423C>A	p.Cys141Ter	p.C141*	ENST00000269305	NM_001126112.2	141	tgC/tgA																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943786	71943786	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	249	616	0	ENST00000298229.2:c.1829A>T	p.Tyr610Phe	p.Y610F	ENST00000298229	NM_001567.3	610	tAc/tTc																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020824	26020824	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	35	281	0	ENST00000357647.3:c.107T>A	p.Val36Glu	p.V36E	ENST00000357647	NM_003529.2	36	gTg/gAg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929592	44929592	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	94	111	0	ENST00000377967.4:c.2693del	p.Lys898ArgfsTer6	p.K898Rfs*6	ENST00000377967	NM_021140.2	898	Aag/ag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465637	99465637	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	115	473	0	ENST00000268035.6:c.2462T>A	p.Val821Asp	p.V821D	ENST00000268035	NM_000875.3	821	gTc/gAc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185161259	185161259	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	197	669	0	ENST00000265026.3:c.686A>C	p.Tyr229Ser	p.Y229S	ENST00000265026	NM_004721.4	229	tAt/tCt																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0035816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	106	232	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0035816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	34	535	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
ATM	472	MSKCC	GRCh37	11	108121601	108121601	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0035816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	144	400	0	ENST00000278616.4:c.1409C>G	p.Ser470Ter	p.S470*	ENST00000278616	NM_000051.3	470	tCa/tGa																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	102	642	1	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	34	407	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	123	662	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	112	622	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	65	644	1	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	125	603	3	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913253	39913253	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	58	218	0	ENST00000378444.4:c.4862delC	p.Pro1621GlnfsTer53	p.P1621Qfs*53	ENST00000378444	NM_001123385.1	1621	cCa/ca																																																																															
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	24	386	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287446	46287446	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	20	359	1	ENST00000334344.6:c.5305C>T	p.Arg1769Ter	p.R1769*	ENST00000334344	NM_152641.2	1769	Cga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528596	8528596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	19	311	0	ENST00000356435.5:c.536G>A	p.Arg179Gln	p.R179Q	ENST00000356435		179	cGa/cAa																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652078	36652078	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45548832		P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	125	721	2	ENST00000244741.5:c.200G>A	p.Arg67His	p.R67H	ENST00000244741	NM_000389.4	67	cGt/cAt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532654	63532654	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	39	679	1	ENST00000307078.5:c.1925del	p.Lys642ArgfsTer47	p.K642Rfs*47	ENST00000307078	NM_004655.3	642	aAg/ag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845477	72845477	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	76	458	0	ENST00000268489.5:c.3863C>T	p.Thr1288Met	p.T1288M	ENST00000268489	NM_006885.3	1288	aCg/aTg																																																																															
WT1	7490	MSKCC	GRCh37	11	32417943	32417943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	72	427	0	ENST00000332351.3:c.1109G>A	p.Arg370His	p.R370H	ENST00000332351	NM_024426.4	370	cGt/cAt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145736828	145736828	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	94	505	0	ENST00000428558.2:c.3613C>T	p.Gln1205Ter	p.Q1205*	ENST00000428558	NM_004260.3	1205	Cag/Tag																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1314993	1314993	+	downstream_gene_variant	3'Flank	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	93	489	1				ENST00000381566																																																																																		
WT1	7490	MSKCC	GRCh37	11	32456461	32456461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	43	448	0	ENST00000332351.3:c.431C>T	p.Pro144Leu	p.P144L	ENST00000332351	NM_024426.4	144	cCg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420670	49420670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	73	550	0	ENST00000301067.7:c.15079C>T	p.Arg5027Ter	p.R5027*	ENST00000301067	NM_003482.3	5027	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	113	672	1	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																																																															
ATR	545	MSKCC	GRCh37	3	142178067	142178067	+	splice_donor_variant	Splice_Site	SNP	A	A	G	rs200556378		P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	13	245	0	ENST00000350721.4:c.7349+2T>C		p.X2450_splice	ENST00000350721	NM_001184.3	2450																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36228164	36228164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	86	587	0	ENST00000222270.7:c.7550G>A	p.Arg2517Gln	p.R2517Q	ENST00000222270	NM_014727.1	2517	cGg/cAg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748962	43748962	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141222111		P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	39	866	2	ENST00000382044.4:c.1844C>T	p.Thr615Met	p.T615M	ENST00000382044	NM_001141980.1	615	aCg/aTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2133780	2133780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	94	612	0	ENST00000219476.3:c.3968C>T	p.Ala1323Val	p.A1323V	ENST00000219476	NM_000548.3	1323	gCg/gTg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38955709	38955709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	17	296	0	ENST00000357387.3:c.2597G>A	p.Arg866Gln	p.R866Q	ENST00000357387	NM_152756.3	866	cGg/cAg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861951	57861951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	76	373	0	ENST00000228682.2:c.1252C>T	p.Arg418Trp	p.R418W	ENST00000228682	NM_005269.2	418	Cgg/Tgg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966157	25966157	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	105	632	1	ENST00000435504.4:c.3049C>T	p.Gln1017Ter	p.Q1017*	ENST00000435504		1017	Cag/Tag																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374825	149374825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	44	385	1	ENST00000360632.3:c.269C>T	p.Ser90Leu	p.S90L	ENST00000360632	NM_015472.4	90	tCg/tTg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400830	72400830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	36	321	0	ENST00000357731.5:c.341G>A	p.Gly114Asp	p.G114D	ENST00000357731	NM_173808.2	114	gGc/gAc																																																																															
SESN2	83667	MSKCC	GRCh37	1	28601513	28601513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	87	712	0	ENST00000253063.3:c.1198G>A	p.Val400Ile	p.V400I	ENST00000253063	NM_031459.4	400	Gtc/Atc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36940986	36940986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	82	509	1	ENST00000361632.4:c.353G>A	p.Arg118His	p.R118H	ENST00000361632		118	cGc/cAc																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612878	228612878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	94	579	0	ENST00000366696.1:c.149G>A	p.Arg50His	p.R50H	ENST00000366696	NM_003493.2	50	cGc/cAc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456516	32456516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	31	159	0	ENST00000332351.3:c.376C>T	p.Pro126Ser	p.P126S	ENST00000332351	NM_024426.4	126	Ccg/Tcg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118363835	118363835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	67	414	0	ENST00000534358.1:c.5068G>A	p.Glu1690Lys	p.E1690K	ENST00000534358	NM_005933.3	1690	Gaa/Aaa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18656304	18656304	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	22	391	1	ENST00000266497.5:c.2987del	p.Lys996SerfsTer9	p.K996Sfs*9	ENST00000266497		995	Aaa/aa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244167	46244167	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	61	358	0	ENST00000334344.6:c.2262del	p.Thr755GlnfsTer3	p.T755Qfs*3	ENST00000334344	NM_152641.2	754	gTt/gt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81914521	81914521	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	56	404	0	ENST00000359376.3:c.655G>A	p.Asp219Asn	p.D219N	ENST00000359376	NM_002661.3	219	Gat/Aat																																																																															
MSI2	124540	MSKCC	GRCh37	17	55693427	55693428	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	86	530	0	ENST00000284073.2:c.636dup	p.Gly213TrpfsTer147	p.G213Wfs*147	ENST00000284073	NM_138962.2	212	ctt/cTtt																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770069	56770069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	73	505	0	ENST00000337432.4:c.65C>T	p.Ala22Val	p.A22V	ENST00000337432	NM_058216.2	22	gCg/gTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10257153	10257153	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	88	441	1	ENST00000340748.4:c.2720T>A	p.Ile907Asn	p.I907N	ENST00000340748		907	aTc/aAc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919657	50919657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	121	712	0	ENST00000440232.2:c.2825C>T	p.Pro942Leu	p.P942L	ENST00000440232	NM_002691.3	942	cCg/cTg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47693909	47693909	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	26	332	0	ENST00000233146.2:c.1623del	p.Val542Ter	p.V542*	ENST00000233146	NM_000251.2	541	acT/ac																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52677264	52677264	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	54	538	2	ENST00000394830.3:c.995G>A	p.Arg332His	p.R332H	ENST00000394830	NM_018313.4	332	cGt/cAt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204830	128204830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	106	853	0	ENST00000341105.2:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000341105	NM_032638.4	204	cGa/cAa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519336	176519336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	30	469	0	ENST00000292408.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000292408	NM_213647.1	248	Cgg/Tgg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288942	33288942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	63	384	2	ENST00000374542.5:c.610C>T	p.Arg204Trp	p.R204W	ENST00000374542	NM_001141970.1	204	Cgg/Tgg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953017	2953017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	147	751	1	ENST00000396946.4:c.2923C>T	p.Arg975Trp	p.R975W	ENST00000396946	NM_032415.4	975	Cgg/Tgg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900330	101900330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	15	330	0	ENST00000374994.4:c.764G>A	p.Arg255His	p.R255H	ENST00000374994	NM_004612.2	255	cGt/cAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417517	139417517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	117	941	0	ENST00000277541.6:c.527G>A	p.Arg176Gln	p.R176Q	ENST00000277541	NM_017617.3	176	cGg/cAg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426675	47426675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	89	323	0	ENST00000377045.4:c.920C>A	p.Pro307His	p.P307H	ENST00000377045	NM_001654.4	307	cCc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70342188	70342188	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	76	238	0	ENST00000374080.3:c.1240A>G	p.Thr414Ala	p.T414A	ENST00000374080		414	Act/Gct																																																																															
BTK	695	MSKCC	GRCh37	X	100604925	100604925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	22	211	0	ENST00000308731.7:c.1928C>T	p.Thr643Ile	p.T643I	ENST00000308731	NM_000061.2	643	aCt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0035818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	444	863	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32905070	32905070	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12	75	231	0	ENST00000380152.3:c.700del	p.Ser234ProfsTer7	p.S234Pfs*7	ENST00000380152		232	taT/ta																																																																															
RB1	5925	MSKCC	GRCh37	13	48881407	48881444	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTTGGTAGGCTTGAGTTTGAAGAAACAGAAGAACCTG	ATTTGGTAGGCTTGAGTTTGAAGAAACAGAAGAACCTG	-			P-0035818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12	43	174	0	ENST00000267163.4:c.138-5_170del		p.X46_splice	ENST00000267163	NM_000321.2	46																																																																																
CCNE1	898	MSKCC	GRCh37	19	30313204	30313204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	69	838	0	ENST00000262643.3:c.898G>A	p.Ala300Thr	p.A300T	ENST00000262643	NM_001238.2	300	Gct/Act																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	108	647	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913476		P-0035820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	122	570	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097802	27097802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	44	336	0	ENST00000324856.7:c.3391C>T	p.Gln1131Ter	p.Q1131*	ENST00000324856	NM_006015.4	1131	Cag/Tag																																																																															
RET	5979	MSKCC	GRCh37	10	43623566	43623566	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0035820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	35	360	0	ENST00000355710.3:c.3194C>G	p.Ser1065Ter	p.S1065*	ENST00000355710	NM_020975.4	1065	tCa/tGa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56493770	56493770	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	89	381	1	ENST00000267101.3:c.3086C>A	p.Ser1029Tyr	p.S1029Y	ENST00000267101	NM_001982.3	1029	tCc/tAc																																																																															
SMO	6608	MSKCC	GRCh37	7	128845577	128845577	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	98	556	0	ENST00000249373.3:c.874G>C	p.Glu292Gln	p.E292Q	ENST00000249373	NM_005631.4	292	Gag/Cag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	173	381	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0035836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	337	598	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																															
RET	5979	MSKCC	GRCh37	10	43610099	43610099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	255	581	0	ENST00000355710.3:c.2051C>A	p.Pro684Gln	p.P684Q	ENST00000355710	NM_020975.4	684	cCg/cAg																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589785	69589785	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	160	16	0	ENST00000168712.1:c.68G>T	p.Trp23Leu	p.W23L	ENST00000168712	NM_002007.2	23	tGg/tTg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40459646	40459646	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	137	575	0	ENST00000345506.4:c.1811A>T	p.His604Leu	p.H604L	ENST00000345506	NM_003152.3	604	cAc/cTc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546700	9546700	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	124	376	0	ENST00000353224.5:c.1322G>T	p.Ser441Ile	p.S441I	ENST00000353224	NM_177990.2	441	aGc/aTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045768	47045768	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	146	314	0	ENST00000329236.7:c.2415del	p.Ile806LeufsTer2	p.I806Lfs*2	ENST00000329236	NM_001204466.1	805	ggC/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	141	572	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578477	+	inframe_deletion	In_Frame_Del	DEL	GGG	GGG	-			P-0035865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	253	806	0	ENST00000269305.4:c.453_455del	p.Pro153del	p.P153del	ENST00000269305	NM_001126112.2	151	ccCCCg/ccg																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182683417	182683417	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	67	607	0	ENST00000292782.4:c.128A>G	p.Asn43Ser	p.N43S	ENST00000292782	NM_020640.2	43	aAt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577563	7577563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	334	555	0	ENST00000269305.4:c.718A>G	p.Ser240Gly	p.S240G	ENST00000269305	NM_001126112.2	240	Agt/Ggt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44923045	44923048	+	frameshift_variant	Frame_Shift_Del	DEL	CTAT	CTAT	-			P-0035911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	437	216	0	ENST00000377967.4:c.1909_1912del	p.Ser637ThrfsTer53	p.S637Tfs*53	ENST00000377967	NM_021140.2	636	CTATct/ct																																																																															
POLE	5426	MSKCC	GRCh37	12	133218408	133218408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	176	660	2	ENST00000320574.5:c.5203G>A	p.Ala1735Thr	p.A1735T	ENST00000320574	NM_006231.2	1735	Gcc/Acc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061200	38061201	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCGGCGCAAG			P-0035912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	171	455	0	ENST00000250448.2:c.777_788dup	p.Arg262_Gln263insHisLeuArgArg	p.R262_Q263insHLRR	ENST00000250448	NM_004496.3	263	cag/caCTTGCGCCGCCAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	271	594	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440707	56440707	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0035913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	313	624	0	ENST00000407977.2:c.511A>T	p.Lys171Ter	p.K171*	ENST00000407977		171	Aag/Tag																																																																															
CIC	23152	MSKCC	GRCh37	19	42795592	42795593	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	91	812	0	ENST00000575354.2:c.2673dup	p.Val892CysfsTer39	p.V892Cfs*39	ENST00000575354	NM_015125.3	891	tct/tcTt																																																																															
MED12	9968	MSKCC	GRCh37	X	70349247	70349247	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	138	371	0	ENST00000374080.3:c.3659T>A	p.Val1220Glu	p.V1220E	ENST00000374080		1220	gTg/gAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945058	151945058	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	55	669	0	ENST00000262189.6:c.2461C>G	p.Pro821Ala	p.P821A	ENST00000262189	NM_170606.2	821	Cca/Gca																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44820601	44820601	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	27	261	0	ENST00000377967.4:c.298G>C	p.Gly100Arg	p.G100R	ENST00000377967	NM_021140.2	100	Ggt/Cgt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046534	30046534	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	226	623	0	ENST00000331968.5:c.2649C>G	p.His883Gln	p.H883Q	ENST00000331968	NM_002742.2	883	caC/caG																																																																															
MGA	23269	MSKCC	GRCh37	15	42041855	42041855	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	211	451	0	ENST00000219905.7:c.6050C>G	p.Ser2017Ter	p.S2017*	ENST00000219905	NM_001164273.1	2017	tCa/tGa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66679749	66679749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	145	363	0	ENST00000307102.5:c.64G>A	p.Gly22Arg	p.G22R	ENST00000307102	NM_002755.3	22	Ggg/Agg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778383	3778383	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	254	673	0	ENST00000262367.5:c.6665C>A	p.Ala2222Asp	p.A2222D	ENST00000262367	NM_004380.2	2222	gCt/gAt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647536	23647536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	265	625	0	ENST00000261584.4:c.331G>A	p.Asp111Asn	p.D111N	ENST00000261584	NM_024675.3	111	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579374	7579375	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	230	675	0	ENST00000269305.4:c.312_313delinsTT	p.Gln104_Gly105delinsHisCys	p.Q104_G105delinsHC	ENST00000269305	NM_001126112.2	104	caGGgc/caTTgc																																																																															
NF1	4763	MSKCC	GRCh37	17	29553624	29553624	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	207	493	0	ENST00000358273.4:c.2173G>T	p.Glu725Ter	p.E725*	ENST00000358273	NM_001042492.2	725	Gaa/Taa																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110280	3110280	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	243	731	0	ENST00000078429.4:c.270G>C	p.Met90Ile	p.M90I	ENST00000078429	NM_002067.2	90	atG/atC																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36209098	36209098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	29	88	0	ENST00000222270.7:c.178G>A	p.Glu60Lys	p.E60K	ENST00000222270	NM_014727.1	60	Gag/Aag																																																																															
CIC	23152	MSKCC	GRCh37	19	42796616	42796616	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	211	632	0	ENST00000575354.2:c.3173C>A	p.Ser1058Ter	p.S1058*	ENST00000575354	NM_015125.3	1058	tCa/tAa																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086164	16086164	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	349	434	0	ENST00000281043.3:c.1340T>C	p.Leu447Ser	p.L447S	ENST00000281043	NM_005378.4	447	tTg/tCg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685282	86685282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	71	202	0	ENST00000274376.6:c.2998G>A	p.Glu1000Lys	p.E1000K	ENST00000274376	NM_002890.2	1000	Gag/Aag																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981728	70981728	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	282	796	0	ENST00000276594.2:c.368G>T	p.Gly123Val	p.G123V	ENST00000276594	NM_024504.3	123	gGt/gTt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141559373	141559373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	243	629	0	ENST00000220592.5:c.1428G>T	p.Lys476Asn	p.K476N	ENST00000220592	NM_012154.3	476	aaG/aaT																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5563174	5563174	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	175	399	0	ENST00000397747.3:c.779G>C	p.Arg260Thr	p.R260T	ENST00000397747	NM_025239.3	260	aGa/aCa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485863	8485863	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	151	365	0	ENST00000356435.5:c.2954A>T	p.Lys985Ile	p.K985I	ENST00000356435		985	aAa/aTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0035917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	341	541	2	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0035917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	151	344	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	124	515	0	ENST00000361445.4:c.5930C>G	p.Thr1977Arg	p.T1977R	ENST00000361445	NM_004958.3	1977	aCa/aGa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245380	153245380	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	304	638	0	ENST00000281708.4:c.1811A>C	p.Lys604Thr	p.K604T	ENST00000281708	NM_033632.3	604	aAa/aCa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119791	70119791	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	141	643	0	ENST00000245479.2:c.793C>T	p.Gln265Ter	p.Q265*	ENST00000245479	NM_000346.3	265	Cag/Tag																																																																															
CIC	23152	MSKCC	GRCh37	19	42795334	42795334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	87	630	0	ENST00000575354.2:c.2414C>T	p.Pro805Leu	p.P805L	ENST00000575354	NM_015125.3	805	cCa/cTa																																																																															
MST1	4485	MSKCC	GRCh37	3	49723366	49723366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	92	490	0	ENST00000449682.2:c.1177C>T	p.Arg393Cys	p.R393C	ENST00000449682	NM_020998.3	393	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860314	151860314	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	101	513	0	ENST00000262189.6:c.10348C>A	p.Gln3450Lys	p.Q3450K	ENST00000262189	NM_170606.2	3450	Cag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68842642	68842642	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	367	538	0	ENST00000261769.5:c.578C>G	p.Thr193Ser	p.T193S	ENST00000261769	NM_004360.3	193	aCt/aGt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054652	5054652	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	104	271	0	ENST00000381652.3:c.704G>C	p.Arg235Thr	p.R235T	ENST00000381652	NM_004972.3	235	aGa/aCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0035922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	85	656	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0035922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	101	727	1	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47612306	47612309	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TTAT	TTAT	-			P-0035922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	46	417	0	ENST00000263735.4:c.862_865del	p.Ile288ProfsTer14	p.I288Pfs*14	ENST00000263735	NM_002354.2	287	gTTATt/gt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52598124	52598125	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	153	760	0	ENST00000394830.3:c.3741dup	p.Gly1248ArgfsTer10	p.G1248Rfs*10	ENST00000394830	NM_018313.4	1247	-/A																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040940	47040941	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0035922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	97	1050	0	ENST00000329236.7:c.1239_1240del	p.Ser414AspfsTer25	p.S414Dfs*25	ENST00000329236	NM_001204466.1	412	tcTGtg/tctg																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246670404	246670404	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	58	653	0	ENST00000388985.4:c.116C>G	p.Thr39Arg	p.T39R	ENST00000388985		39	aCg/aGg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28636121	28636121	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	78	729	0	ENST00000241453.7:c.251A>T	p.Asp84Val	p.D84V	ENST00000241453	NM_004119.2	84	gAt/gTt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011109	12011109	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0035924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	150	472	0	ENST00000353533.5:c.516delT	p.Asp173ThrfsTer24	p.D173Tfs*24	ENST00000353533	NM_003010.3	172	ggT/gg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30322768	30322768	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	87	362	0	ENST00000322652.5:c.1786del	p.Thr596ProfsTer18	p.T596Pfs*18	ENST00000322652	NM_015355.2	594	gAa/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0035927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	62	822	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0035927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	536	818	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	242	291	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790156	40790156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1238	124	583	0	ENST00000373198.4:c.2575C>A	p.Gln859Lys	p.Q859K	ENST00000373198	NM_133170.3	859	Cag/Aag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435658	18435658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143896492		P-0035927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	59	289	0	ENST00000266497.5:c.643G>A	p.Gly215Arg	p.G215R	ENST00000266497		215	Gga/Aga																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62325812	62325812	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141782041		P-0035927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1309	191	580	0	ENST00000508582.2:c.3152C>T	p.Pro1051Leu	p.P1051L	ENST00000508582		1051	cCc/cTc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416769	416769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	94	400	0	ENST00000399788.2:c.3781C>T	p.Arg1261Trp	p.R1261W	ENST00000399788	NM_001042603.1	1261	Cgg/Tgg																																																																															
AR	367	MSKCC	GRCh37	X	66765653	66765653	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1731	113	961	0	ENST00000374690.3:c.665A>T	p.Lys222Met	p.K222M	ENST00000374690	NM_000044.3	222	aAg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	50	758	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37665978	37665978	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	58	458	0	ENST00000447079.4:c.2630A>G	p.Asp877Gly	p.D877G	ENST00000447079	NM_015083.1	877	gAt/gGt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37672062	37672062	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0035824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	57	416	0	ENST00000447079.4:c.2846+1G>T		p.X949_splice	ENST00000447079	NM_015083.1	949																																																																																
MYD88	4615	MSKCC	GRCh37	3	38180374	38180374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	132	639	0	ENST00000396334.3:c.222C>G	p.Ile74Met	p.I74M	ENST00000396334	NM_002468.4	74	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7576853	7576853	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs11575996		P-0035827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	154	598	0	ENST00000269305.4:c.993G>T	p.Gln331His	p.Q331H	ENST00000269305	NM_001126112.2	331	caG/caT																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18691186	18691186	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	18	427	0	ENST00000266497.5:c.3297C>A	p.Cys1099Ter	p.C1099*	ENST00000266497		1099	tgC/tgA																																																																															
INSR	3643	MSKCC	GRCh37	19	7123001	7123001	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	53	670	1	ENST00000302850.5:c.3259-1G>T		p.X1087_splice	ENST00000302850	NM_000208.2	1087																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15290009	15290009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	53	847	0	ENST00000263388.2:c.3545G>A	p.Cys1182Tyr	p.C1182Y	ENST00000263388	NM_000435.2	1182	tGc/tAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76889108	76889108	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	10	317	0	ENST00000373344.5:c.4902G>C	p.Trp1634Cys	p.W1634C	ENST00000373344	NM_000489.3	1634	tgG/tgC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	48	502	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0035833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	86	604	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981550	201981551	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0035833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	100	743	0	ENST00000359651.3:c.466_467dup	p.Gly157GlnfsTer98	p.G157Qfs*98	ENST00000359651		155	gac/gaCCc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974766	21974766	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	14	124	0	ENST00000304494.5:c.61G>C	p.Ala21Pro	p.A21P	ENST00000304494	NM_000077.4	21	Gcc/Ccc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	200	499	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0035839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	206	433	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
SLX4	84464	MSKCC	GRCh37	16	3634780	3634780	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1296	311	679	0	ENST00000294008.3:c.4729G>T	p.Glu1577Ter	p.E1577*	ENST00000294008	NM_032444.2	1577	Gaa/Taa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061462	38061462	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	82	489	0	ENST00000250448.2:c.527T>C	p.Ile176Thr	p.I176T	ENST00000250448	NM_004496.3	176	aTc/aCc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120506330	120506330	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	78	554	0	ENST00000256646.2:c.1782C>G	p.Ile594Met	p.I594M	ENST00000256646	NM_024408.3	594	atC/atG																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120506380	120506380	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	77	565	0	ENST00000256646.2:c.1732C>A	p.Pro578Thr	p.P578T	ENST00000256646	NM_024408.3	578	Cct/Act																																																																															
CDH1	999	MSKCC	GRCh37	16	68842720	68842727	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTGGAT	CTCTGGAT	-			P-0035842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	157	584	0	ENST00000261769.5:c.656_663del	p.Pro219GlnfsTer22	p.P219Qfs*22	ENST00000261769	NM_004360.3	219	cCTCTGGAT/c																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804379	46804379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	91	490	0	ENST00000290295.7:c.628G>A	p.Ala210Thr	p.A210T	ENST00000290295	NM_006361.5	210	Gcc/Acc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115405	115115429	+	protein_altering_variant	In_Frame_Del	DEL	TCCAGTGTCCCGGAAACCTTTTGCA	TCCAGTGTCCCGGAAACCTTTTGCA	C			P-0035842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	66	629	0	ENST00000257566.3:c.897_921delinsG	p.Phe299_Gly307delinsLeu	p.F299_G307delinsL	ENST00000257566	NM_016569.3	299	ttTGCAAAAGGTTTCCGGGACACTGGA/ttG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0035848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	637	647	8	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0035851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	2171	611	2	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0035851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	2017	618	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246002	41246002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	204	834	0	ENST00000357654.3:c.1546G>T	p.Asp516Tyr	p.D516Y	ENST00000357654	NM_007294.3	516	Gat/Tat																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31521249	31521250	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0035851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	151	666	0	ENST00000344624.3:c.926_927dup	p.Glu310LysfsTer43	p.E310Kfs*43	ENST00000344624		309	-/AA																																																																															
BCL6	604	MSKCC	GRCh37	3	187447715	187447715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	69	603	1	ENST00000232014.4:c.478C>T	p.Arg160Cys	p.R160C	ENST00000232014	NM_001130845.1	160	Cgt/Tgt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0035853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	123	628	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578507	7578507	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	474	834	0	ENST00000269305.4:c.423C>A	p.Cys141Ter	p.C141*	ENST00000269305	NM_001126112.2	141	tgC/tgA																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562142	21562142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	539	989	0	ENST00000382592.4:c.1777C>T	p.Arg593Cys	p.R593C	ENST00000382592	NM_014572.2	593	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012317	152012317	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	342	660	1	ENST00000262189.6:c.496C>T	p.Gln166Ter	p.Q166*	ENST00000262189	NM_170606.2	166	Caa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0035855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	142	361	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916946	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0035855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	194	375	0	ENST00000263967.3:c.332_334delAGA	p.Lys111del	p.K111del	ENST00000263967	NM_006218.2	111	AAG/-																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0035855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	39	169	1	ENST00000412916.2:c.165+1G>A		p.X55_splice	ENST00000412916		55																																																																																
TBX3	6926	MSKCC	GRCh37	12	115115450	115115451	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAA			P-0035855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	146	554	0	ENST00000257566.3:c.875_876insTTT	p.Gln291_Leu292insPhe	p.Q291_L292insF	ENST00000257566	NM_016569.3	292	tta/ttTTTa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177727	56177727	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	83	404	0	ENST00000399503.3:c.2701del	p.Ser901ProfsTer8	p.S901Pfs*8	ENST00000399503	NM_005921.1	900	agT/ag																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520009		P-0035864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	79	481	2	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	224	542	1	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198270162	198270162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	155	389	0	ENST00000335508.6:c.1274G>A	p.Arg425Gln	p.R425Q	ENST00000335508	NM_012433.2	425	cGa/cAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845360	151845360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	274	657	1	ENST00000262189.6:c.13652G>A	p.Gly4551Asp	p.G4551D	ENST00000262189	NM_170606.2	4551	gGt/gAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151849907	151849907	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	188	410	0	ENST00000262189.6:c.12409G>T	p.Glu4137Ter	p.E4137*	ENST00000262189	NM_170606.2	4137	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	835	684	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	432	732	0	ENST00000171111.5:c.959G>T	p.Arg320Leu	p.R320L	ENST00000171111	NM_203500.1	320	cGg/cTg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278061	18278061	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	187	632	0	ENST00000222254.8:c.1681A>G	p.Asn561Asp	p.N561D	ENST00000222254	NM_005027.3	561	Aac/Gac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789646	3789646	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	157	511	0	ENST00000262367.5:c.4213G>T	p.Val1405Leu	p.V1405L	ENST00000262367	NM_004380.2	1405	Gtg/Ttg																																																																															
JUN	3725	MSKCC	GRCh37	1	59248649	59248650	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	208	858	0	ENST00000371222.2:c.93dup	p.Lys32GlnfsTer75	p.K32Qfs*75	ENST00000371222	NM_002228.3	31	-/C																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72076794	72076794	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145840571		P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	285	538	0	ENST00000357731.5:c.703G>A	p.Val235Met	p.V235M	ENST00000357731	NM_173808.2	235	Gtg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49439703	49439703	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	371	636	0	ENST00000301067.7:c.4741G>T	p.Glu1581Ter	p.E1581*	ENST00000301067	NM_003482.3	1581	Gag/Tag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288885	15288885	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	57	176	0	ENST00000263388.2:c.3854G>C	p.Arg1285Pro	p.R1285P	ENST00000263388	NM_000435.2	1285	cGt/cCt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488750	212488750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	151	532	0	ENST00000342788.4:c.2099C>A	p.Pro700His	p.P700H	ENST00000342788	NM_005235.2	700	cCc/cAc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79974863	79974863	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	284	564	1	ENST00000265081.6:c.1291G>T	p.Ala431Ser	p.A431S	ENST00000265081	NM_002439.4	431	Gcc/Tcc																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64289996	64289996	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	279	468	0	ENST00000370651.3:c.439C>G	p.Leu147Val	p.L147V	ENST00000370651	NM_003463.4	147	Ctg/Gtg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523609	106523609	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	75	287	0	ENST00000359195.3:c.2760+1G>T		p.X920_splice	ENST00000359195	NM_002649.2	920																																																																																
MYC	4609	MSKCC	GRCh37	8	128751191	128751191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	149	434	0	ENST00000377970.2:c.728A>G	p.Glu243Gly	p.E243G	ENST00000377970	NM_002467.4	243	gAg/gGg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	152	658	0	ENST00000349310.3:c.155T>G	p.Leu52Arg	p.L52R	ENST00000349310	NM_001014432.1	52	cTc/cGc																																																																															
PARP1	142	MSKCC	GRCh37	1	226561959	226561959	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	37	603	0	ENST00000366794.5:c.2038G>C	p.Glu680Gln	p.E680Q	ENST00000366794	NM_001618.3	680	Gaa/Caa																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154776	2154776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	63	777	1	ENST00000434045.2:c.445G>A	p.Asp149Asn	p.D149N	ENST00000434045	NM_001127598.1	149	Gac/Aac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023008	27023010	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	11	37	0	ENST00000324856.7:c.126_128delGGC	p.Ala45del	p.A45del	ENST00000324856	NM_006015.4	38	gaGGCg/gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	47	597	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
XPO1	7514	MSKCC	GRCh37	2	61721187	61721187	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	45	370	0	ENST00000401558.2:c.1087A>G	p.Thr363Ala	p.T363A	ENST00000401558	NM_003400.3	363	Act/Gct																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212652820	212652820	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	52	493	1	ENST00000342788.4:c.486T>A	p.His162Gln	p.H162Q	ENST00000342788	NM_005235.2	162	caT/caA																																																																															
INHA	3623	MSKCC	GRCh37	2	220439886	220439886	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	74	613	1	ENST00000243786.2:c.739C>A	p.Arg247Ser	p.R247S	ENST00000243786	NM_002191.3	247	Cgc/Agc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468494	89468494	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	104	487	0	ENST00000336596.2:c.2028G>T	p.Gln676His	p.Q676H	ENST00000336596	NM_005233.5	676	caG/caT																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133578	55133578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	24	383	0	ENST00000257290.5:c.882G>T	p.Gln294His	p.Q294H	ENST00000257290	NM_006206.4	294	caG/caT																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197202	26197202	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1118	105	950	0	ENST00000356476.2:c.277C>G	p.Leu93Val	p.L93V	ENST00000356476		93	Ctg/Gtg																																																																															
HGF	3082	MSKCC	GRCh37	7	81359019	81359019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	42	589	0	ENST00000222390.5:c.942G>T	p.Arg314Ser	p.R314S	ENST00000222390	NM_000601.4	314	agG/agT																																																																															
CDK6	1021	MSKCC	GRCh37	7	92404082	92404082	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	83	414	0	ENST00000265734.4:c.297A>T	p.Glu99Asp	p.E99D	ENST00000265734	NM_001259.6	99	gaA/gaT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509528	106509528	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	73	384	0	ENST00000359195.3:c.1522C>A	p.Pro508Thr	p.P508T	ENST00000359195	NM_002649.2	508	Cca/Aca																																																																															
BRAF	673	MSKCC	GRCh37	7	140453075	140453075	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	102	303	0	ENST00000288602.6:c.1860G>T	p.Met620Ile	p.M620I	ENST00000288602	NM_004333.4	620	atG/atT																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94178979	94178979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	55	380	0	ENST00000323929.3:c.1864G>T	p.Asp622Tyr	p.D622Y	ENST00000323929	NM_005591.3	622	Gat/Tat																																																																															
PGR	5241	MSKCC	GRCh37	11	100998288	100998288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	23	161	1	ENST00000325455.5:c.1514C>T	p.Ala505Val	p.A505V	ENST00000325455	NM_001202474.3	505	gCc/gTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991608	72991608	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	50	591	0	ENST00000268489.5:c.2437A>T	p.Thr813Ser	p.T813S	ENST00000268489	NM_006885.3	813	Acc/Tcc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438279	56438279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	99	421	0	ENST00000407977.2:c.714G>T	p.Trp238Cys	p.W238C	ENST00000407977		238	tgG/tgT																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59934592	59934592	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	40	270	2	ENST00000259008.2:c.206G>T	p.Gly69Val	p.G69V	ENST00000259008	NM_032043.2	69	gGg/gTg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39567792	39567792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	30	360	0	ENST00000262039.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000262039	NM_002647.2	183	cGa/cAa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210472	2210472	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	72	374	2	ENST00000398665.3:c.1079C>A	p.Pro360Gln	p.P360Q	ENST00000398665	NM_032482.2	360	cCa/cAa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096009	11096009	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	129	556	1	ENST00000344626.4:c.283G>T	p.Gly95Ter	p.G95*	ENST00000344626	NM_003072.3	95	Gga/Tga																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520212	9520212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	65	488	0	ENST00000353224.5:c.2057C>A	p.Ser686Tyr	p.S686Y	ENST00000353224	NM_177990.2	686	tCt/tAt																																																																															
NF2	4771	MSKCC	GRCh37	22	30064329	30064329	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	116	494	0	ENST00000338641.4:c.893A>T	p.Gln298Leu	p.Q298L	ENST00000338641	NM_000268.3	298	cAg/cTg																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123480571	123480571	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	32	225	0	ENST00000371139.4:c.79G>T	p.Gly27Cys	p.G27C	ENST00000371139	NM_001114937.2	27	Ggc/Tgc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	40	181	0				ENST00000310581	NM_198253.2																																																																																	
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	122	541	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	206	724	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
SMO	6608	MSKCC	GRCh37	7	128829321	128829321	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	118	493	0	ENST00000249373.3:c.329C>T	p.Ser110Leu	p.S110L	ENST00000249373	NM_005631.4	110	tCg/tTg																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197163	26197163	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	41	473	0	ENST00000356476.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000356476		106	Gag/Cag																																																																															
TET2	54790	MSKCC	GRCh37	4	106182988	106182988	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	19	252	0	ENST00000380013.4:c.4027G>C	p.Asp1343His	p.D1343H	ENST00000380013	NM_001127208.2	1343	Gat/Cat																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430381	78430381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	78	477	0	ENST00000370768.2:c.787G>A	p.Glu263Lys	p.E263K	ENST00000370768	NM_003902.3	263	Gaa/Aaa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243858938	243858938	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	96	443	0	ENST00000263826.5:c.127C>G	p.Gln43Glu	p.Q43E	ENST00000263826	NM_005465.4	43	Caa/Gaa																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67201875	67201875	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	41	554	0	ENST00000312629.5:c.1075G>C	p.Asp359His	p.D359H	ENST00000312629	NM_003952.2	359	Gat/Cat																																																																															
PGR	5241	MSKCC	GRCh37	11	100998944	100998944	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	77	451	1	ENST00000325455.5:c.858C>A	p.Asp286Glu	p.D286E	ENST00000325455	NM_001202474.3	286	gaC/gaA																																																																															
PGR	5241	MSKCC	GRCh37	11	100998958	100998958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	71	456	0	ENST00000325455.5:c.844C>A	p.Leu282Met	p.L282M	ENST00000325455	NM_001202474.3	282	Ctg/Atg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374313	118374313	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	28	355	0	ENST00000534358.1:c.7706G>T	p.Gly2569Val	p.G2569V	ENST00000534358	NM_005933.3	2569	gGa/gTa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100212	30100212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	55	391	0	ENST00000331968.5:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000331968	NM_002742.2	470	Gaa/Aaa																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872976	35872976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	89	417	0	ENST00000216797.5:c.256G>A	p.Glu86Lys	p.E86K	ENST00000216797	NM_020529.2	86	Gaa/Aaa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004922	16004922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	56	642	0	ENST00000268712.3:c.2332G>A	p.Glu778Lys	p.E778K	ENST00000268712	NM_006311.3	778	Gaa/Aaa																																																																															
EZH1	2145	MSKCC	GRCh37	17	40858074	40858074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	55	652	1	ENST00000428826.2:c.1790G>A	p.Cys597Tyr	p.C597Y	ENST00000428826		597	tGc/tAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440936	56440936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	47	542	0	ENST00000407977.2:c.401C>T	p.Ala134Val	p.A134V	ENST00000407977		134	gCc/gTc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2191170	2191170	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	184	636	0	ENST00000398665.3:c.424G>C	p.Asp142His	p.D142H	ENST00000398665	NM_032482.2	142	Gac/Cac																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965178	25965178	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	38	595	0	ENST00000435504.4:c.4028C>G	p.Ser1343Cys	p.S1343C	ENST00000435504		1343	tCt/tGt																																																																															
ALK	238	MSKCC	GRCh37	2	29551243	29551243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	127	516	1	ENST00000389048.3:c.1387C>A	p.Gln463Lys	p.Q463K	ENST00000389048	NM_004304.4	463	Cag/Aag																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872950	136872950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	53	317	1	ENST00000241393.3:c.548G>A	p.Arg183Lys	p.R183K	ENST00000241393	NM_003467.2	183	aGa/aAa																																																																															
CASP8	841	MSKCC	GRCh37	2	202149751	202149751	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	49	634	0	ENST00000358485.4:c.1192C>G	p.Gln398Glu	p.Q398E	ENST00000358485	NM_001080125.1	398	Cag/Gag																																																																															
TOP1	7150	MSKCC	GRCh37	20	39741503	39741503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	30	281	0	ENST00000361337.2:c.1390G>T	p.Asp464Tyr	p.D464Y	ENST00000361337	NM_003286.2	464	Gac/Tac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89444986	89444986	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	52	325	0	ENST00000336596.2:c.1307-1G>T		p.X436_splice	ENST00000336596	NM_005233.5	436																																																																																
KIT	3815	MSKCC	GRCh37	4	55575593	55575593	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	28	353	0	ENST00000288135.5:c.1119C>A	p.Tyr373Ter	p.Y373*	ENST00000288135	NM_000222.2	373	taC/taA																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517753	176517753	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	48	620	0	ENST00000292408.4:c.363G>C	p.Leu121Phe	p.L121F	ENST00000292408	NM_213647.1	121	ttG/ttC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151896531	151896531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	20	255	0	ENST00000262189.6:c.4106G>T	p.Gly1369Val	p.G1369V	ENST00000262189	NM_170606.2	1369	gGa/gTa																																																																															
TEK	7010	MSKCC	GRCh37	9	27206652	27206652	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	51	480	0	ENST00000380036.4:c.2437C>G	p.Pro813Ala	p.P813A	ENST00000380036	NM_000459.3	813	Cct/Gct																																																																															
AMER1	139285	MSKCC	GRCh37	X	63409911	63409911	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	18	207	0	ENST00000330258.3:c.3256C>T	p.Gln1086Ter	p.Q1086*	ENST00000330258	NM_152424.3	1086	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115750	8115750	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	83	396	0	ENST00000346208.3:c.1096C>T	p.Arg366Ter	p.R366*	ENST00000346208		366	Cga/Tga																																																																															
RB1	5925	MSKCC	GRCh37	13	49047495	49047495	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			13	11	128	0	ENST00000267163.4:c.2490-1G>T		p.X830_splice	ENST00000267163	NM_000321.2	830																																																																																
CBFB	865	MSKCC	GRCh37	16	67063312	67063312	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0035596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	81	122	0	ENST00000412916.2:c.2T>A	p.Met1?	p.M1?	ENST00000412916		1	aTg/aAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	32	405	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274121	10274121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	95	642	0	ENST00000330684.3:c.148G>A	p.Glu50Lys	p.E50K	ENST00000330684	NM_001134407.1	50	Gaa/Aaa																																																																															
AR	367	MSKCC	GRCh37	X	66863125	66863125	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs139524801		P-0035625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	30	343	0	ENST00000374690.3:c.1644G>T	p.Leu548Phe	p.L548F	ENST00000374690	NM_000044.3	548	ttG/ttT																																																																															
ATM	472	MSKCC	GRCh37	11	108153469	108153469	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0035625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	178	611	0	ENST00000278616.4:c.3609T>A	p.Tyr1203Ter	p.Y1203*	ENST00000278616	NM_000051.3	1203	taT/taA																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25973179	25973179	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	101	521	0	ENST00000435504.4:c.1246G>T	p.Glu416Ter	p.E416*	ENST00000435504		416	Gag/Tag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518148	8518148	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	72	529	0	ENST00000356435.5:c.1243C>A	p.Gln415Lys	p.Q415K	ENST00000356435		415	Caa/Aaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0035635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	161	516	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0035635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	376	579	6	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727453	66727453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	259	437	0	ENST00000307102.5:c.169A>G	p.Lys57Glu	p.K57E	ENST00000307102	NM_002755.3	57	Aag/Gag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554408	63554408	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	453	641	1	ENST00000307078.5:c.331T>C	p.Trp111Arg	p.W111R	ENST00000307078	NM_004655.3	111	Tgg/Cgg																																																																															
APC	324	MSKCC	GRCh37	5	112175219	112175219	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0035635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	208	246	1	ENST00000257430.4:c.3928A>T	p.Lys1310Ter	p.K1310*	ENST00000257430	NM_000038.5	1310	Aag/Tag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047963	180047963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	413	626	0	ENST00000261937.6:c.2212G>A	p.Val738Met	p.V738M	ENST00000261937	NM_182925.4	738	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	334	605	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600378	10600378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	380	738	1	ENST00000171111.5:c.1477G>A	p.Glu493Lys	p.E493K	ENST00000171111	NM_203500.1	493	Gag/Aag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250862	153250862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	136	397	0	ENST00000281708.4:c.1198G>A	p.Asp400Asn	p.D400N	ENST00000281708	NM_033632.3	400	Gac/Aac																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246078861	246078861	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	175	620	0	ENST00000388985.4:c.784G>C	p.Asp262His	p.D262H	ENST00000388985		262	Gac/Cac																																																																															
CCND2	894	MSKCC	GRCh37	12	4388040	4388040	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	459	408	0	ENST00000261254.3:c.526C>G	p.Leu176Val	p.L176V	ENST00000261254	NM_001759.3	176	Ctg/Gtg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346289	89346289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	33	347	2	ENST00000301030.4:c.6661G>A	p.Val2221Met	p.V2221M	ENST00000301030	NM_001256183.1	2221	Gtg/Atg																																																																															
NF1	4763	MSKCC	GRCh37	17	29661995	29661995	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	103	422	0	ENST00000358273.4:c.5952T>A	p.Asn1984Lys	p.N1984K	ENST00000358273	NM_001042492.2	1984	aaT/aaA																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37873714	37873714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	129	537	0	ENST00000269571.5:c.1879C>T	p.Pro627Ser	p.P627S	ENST00000269571		627	Ccc/Tcc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56367740	56367740	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	251	457	0	ENST00000348428.3:c.566T>G	p.Val189Gly	p.V189G	ENST00000348428	NM_006785.3	189	gTc/gGc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24135778	24135778	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	221	418	0	ENST00000263121.7:c.265A>T	p.Thr89Ser	p.T89S	ENST00000263121	NM_003073.3	89	Acc/Tcc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259546	89259546	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	221	418	0	ENST00000336596.2:c.690T>G	p.Cys230Trp	p.C230W	ENST00000336596	NM_005233.5	230	tgT/tgG																																																																															
BCL6	604	MSKCC	GRCh37	3	187449709	187449709	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	343	357	0	ENST00000232014.4:c.171C>G	p.Phe57Leu	p.F57L	ENST00000232014	NM_001130845.1	57	ttC/ttG																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541607	187541608	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	212	380	0	ENST00000441802.2:c.6132_6133delinsTT	p.Gln2044_Glu2045delinsHisTer	p.Q2044_E2045delinsH*	ENST00000441802	NM_005245.3	2044	caGGag/caTTag																																																																															
PMS2	5395	MSKCC	GRCh37	7	6043125	6043328	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTATTTGCTTCATTTCATTCATTTATTGCTCACATTTCAGAAGTACTATGACTTAGATTGGCAGCGAGACAAAACAGAATTCAGAAGCTAGAAGTTGAGATGTTGAGATAGAAAACTGAAAATAATAATGATTCCAATTAATTTTCAGAGAGGTTTCTCTAAGGGGTCAAGTGAGTGGATAAAAATATTGTATCACCTCAGTGC	CTATTTGCTTCATTTCATTCATTTATTGCTCACATTTCAGAAGTACTATGACTTAGATTGGCAGCGAGACAAAACAGAATTCAGAAGCTAGAAGTTGAGATGTTGAGATAGAAAACTGAAAATAATAATGATTCCAATTAATTTTCAGAGAGGTTTCTCTAAGGGGTCAAGTGAGTGGATAAAAATATTGTATCACCTCAGTGC	-			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	69	33	0	ENST00000265849.7:c.346_353+196del		p.X116_splice	ENST00000265849	NM_000535.5	116																																																																																
AR	367	MSKCC	GRCh37	X	66931447	66931447	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	279	238	0	ENST00000374690.3:c.2089T>A	p.Ser697Thr	p.S697T	ENST00000374690	NM_000044.3	697	Tcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	24	437	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692790	89692790	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	90	351	0	ENST00000371953.3:c.274G>C	p.Asp92His	p.D92H	ENST00000371953	NM_000314.4	92	Gac/Cac																																																																															
PREX2	80243	MSKCC	GRCh37	8	68981315	68981315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	22	330	0	ENST00000288368.4:c.1387C>T	p.Arg463Cys	p.R463C	ENST00000288368	NM_024870.2	463	Cgc/Tgc																																																																															
ARAF	369	MSKCC	GRCh37	X	47424706	47424706	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	79	581	0	ENST00000377045.4:c.514T>A	p.Ser172Thr	p.S172T	ENST00000377045	NM_001654.4	172	Tcg/Acg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499841	8499841	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	48	306	0	ENST00000356435.5:c.2129-1G>T		p.X710_splice	ENST00000356435		710																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	225	589	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0035662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	347	696	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0035662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	180	353	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584560	48584560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	227	411	0	ENST00000342988.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000342988	NM_005359.5	245	Cag/Tag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923684	39923684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	331	629	0	ENST00000378444.4:c.3407G>A	p.Arg1136His	p.R1136H	ENST00000378444	NM_001123385.1	1136	cGc/cAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151882717	151882717	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0035662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	147	218	0	ENST00000262189.6:c.5009-1G>A		p.X1670_splice	ENST00000262189	NM_170606.2	1670																																																																																
SPRED1	161742	MSKCC	GRCh37	15	38632026	38632026	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0035662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	197	601	0	ENST00000299084.4:c.512C>G	p.Ser171Ter	p.S171*	ENST00000299084	NM_152594.2	171	tCa/tGa																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551889	150551889	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	142	251	0	ENST00000369026.2:c.118A>G	p.Lys40Glu	p.K40E	ENST00000369026	NM_021960.4	40	Aag/Gag																																																																															
CDK8	1024	MSKCC	GRCh37	13	26927934	26927934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	185	397	0	ENST00000381527.3:c.373C>T	p.Arg125Trp	p.R125W	ENST00000381527	NM_001260.1	125	Cgg/Tgg																																																																															
CDH1	999	MSKCC	GRCh37	16	68846043	68846043	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	332	568	2	ENST00000261769.5:c.1016delC	p.Pro339LeufsTer17	p.P339Lfs*17	ENST00000261769	NM_004360.3	338	ttC/tt																																																																															
NF1	4763	MSKCC	GRCh37	17	29496932	29496932	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0035662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	180	359	0	ENST00000358273.4:c.503C>G	p.Ser168Ter	p.S168*	ENST00000358273	NM_001042492.2	168	tCa/tGa																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453318	40453318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	293	739	0	ENST00000345506.4:c.1015C>A	p.Pro339Thr	p.P339T	ENST00000345506	NM_003152.3	339	Cct/Act																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245802	5245802	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	377	671	0	ENST00000357368.4:c.973C>T	p.Gln325Ter	p.Q325*	ENST00000357368	NM_002850.3	325	Cag/Tag																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627325	14627328	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0035662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	430	819	1	ENST00000254322.2:c.742_745del	p.Lys248GlufsTer23	p.K248Efs*23	ENST00000254322	NM_006145.1	248	AAGAga/ga																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627477	14627477	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	327	538	0	ENST00000254322.2:c.593G>T	p.Arg198Leu	p.R198L	ENST00000254322	NM_006145.1	198	cGa/cTa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99189388	99189388	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	163	481	1	ENST00000074304.5:c.2644G>A	p.Glu882Lys	p.E882K	ENST00000074304	NM_001134224.1	882	Gag/Aag																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164621	36164633	+	frameshift_variant	Frame_Shift_Del	DEL	CATGGAGAACTGG	CATGGAGAACTGG	-			P-0035662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	217	474	1	ENST00000300305.3:c.1242_1254del	p.Tyr414Ter	p.Y414*	ENST00000300305		414	taCCAGTTCTCCATG/ta																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900291	101900291	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	177	359	0	ENST00000374994.4:c.725G>A	p.Trp242Ter	p.W242*	ENST00000374994	NM_004612.2	242	tGg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	49	296	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RET	5979	MSKCC	GRCh37	10	43598018	43598018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	76	440	1	ENST00000355710.3:c.566G>A	p.Arg189His	p.R189H	ENST00000355710	NM_020975.4	189	cGc/cAc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0035692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	114	338	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0035692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	28	161	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0035692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	61	150	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	169	468	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920412	134920412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	140	437	1	ENST00000398015.3:c.2227C>T	p.Arg743Trp	p.R743W	ENST00000398015	NM_004441.4	743	Cgg/Tgg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485280	8485280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	34	228	0	ENST00000356435.5:c.3100G>A	p.Val1034Met	p.V1034M	ENST00000356435		1034	Gtg/Atg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123196768	123196770	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0035692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	49	139	0	ENST00000218089.9:c.1661_1663del	p.Lys554del	p.K554del	ENST00000218089	NM_001042749.1	552	gAGAag/gag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437515	49437515	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	138	390	0	ENST00000301067.7:c.5370del	p.Phe1790LeufsTer12	p.F1790Lfs*12	ENST00000301067	NM_003482.3	1790	ttT/tt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041576	47041576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	117	456	0	ENST00000329236.7:c.1567C>T	p.Gln523Ter	p.Q523*	ENST00000329236	NM_001204466.1	523	Cag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257167	16257167	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	97	600	0	ENST00000375759.3:c.4432A>G	p.Lys1478Glu	p.K1478E	ENST00000375759	NM_015001.2	1478	Aaa/Gaa																																																																															
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	44	275	0	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123243246	123243246	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	160	1055	0	ENST00000358487.5:c.2267A>G	p.Asp756Gly	p.D756G	ENST00000358487	NM_000141.4	756	gAc/gGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	150	1019	2	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912023	32912023	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	98	776	0	ENST00000380152.3:c.3531C>G	p.Asp1177Glu	p.D1177E	ENST00000380152		1177	gaC/gaG																																																																															
BLM	641	MSKCC	GRCh37	15	91354604	91354604	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	84	535	1	ENST00000355112.3:c.4048del	p.Thr1350LeufsTer56	p.T1350Lfs*56	ENST00000355112	NM_000057.2	1348	agA/ag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274211	10274211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	55	475	0	ENST00000330684.3:c.58G>A	p.Gly20Ser	p.G20S	ENST00000330684	NM_001134407.1	20	Ggt/Agt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	95	601	5	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998898	11998898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	42	225	0	ENST00000353533.5:c.400C>T	p.Arg134Trp	p.R134W	ENST00000353533	NM_003010.3	134	Cgg/Tgg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	31	353	0	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40456401	40456401	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	96	781	0	ENST00000345506.4:c.1211A>C	p.Glu404Ala	p.E404A	ENST00000345506	NM_003152.3	404	gAg/gCg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437569	56437569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	92	750	0	ENST00000407977.2:c.893G>A	p.Cys298Tyr	p.C298Y	ENST00000407977		298	tGt/tAt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662571	227662571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	44	634	0	ENST00000305123.5:c.884G>A	p.Ser295Asn	p.S295N	ENST00000305123	NM_005544.2	295	aGc/aAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022443	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	35	321	0	ENST00000375687.4:c.1933_1934del	p.Gly645TrpfsTer12	p.G645Wfs*12	ENST00000375687	NM_015338.5	643	GGg/g																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265049	46265049	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	76	605	0	ENST00000371998.3:c.1924del	p.Leu642Ter	p.L642*	ENST00000371998		640	tCc/tc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37042540	37042540	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	79	483	0	ENST00000231790.2:c.302G>T	p.Gly101Val	p.G101V	ENST00000231790	NM_000249.3	101	gGt/gTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125635	47125635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	95	549	0	ENST00000409792.3:c.5635C>T	p.Arg1879Cys	p.R1879C	ENST00000409792	NM_014159.6	1879	Cgc/Tgc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439783	52439783	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	92	694	0	ENST00000460680.1:c.929C>T	p.Thr310Ile	p.T310I	ENST00000460680	NM_004656.3	310	aCa/aTa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801064	1801064	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	150	1275	3	ENST00000260795.2:c.197delG	p.Gly66ValfsTer32	p.G66Vfs*32	ENST00000260795		65	Ggg/gg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803444	1803444	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199944818		P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	92	799	1	ENST00000260795.2:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000260795		238	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	29	346	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	45	318	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	55	373	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112178781	112178781	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141010008		P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	83	549	0	ENST00000257430.4:c.7490C>T	p.Ser2497Leu	p.S2497L	ENST00000257430	NM_000038.5	2497	tCg/tTg																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26021082	26021082	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	76	508	0	ENST00000357647.3:c.365C>A	p.Pro122His	p.P122H	ENST00000357647	NM_003529.2	122	cCc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527697	157527697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	91	771	1	ENST00000346085.5:c.5422C>T	p.Arg1808Cys	p.R1808C	ENST00000346085	NM_020732.3	1808	Cgt/Tgt																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	26	361	1	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949775	151949775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	79	479	0	ENST00000262189.6:c.1325G>A	p.Gly442Asp	p.G442D	ENST00000262189	NM_170606.2	442	gGc/gAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390656	139390656	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	136	1075	0	ENST00000277541.6:c.7535del	p.Pro2512ArgfsTer77	p.P2512Rfs*77	ENST00000277541	NM_017617.3	2512	cCg/cg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417349	139417349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	123	867	0	ENST00000277541.6:c.695C>T	p.Thr232Ile	p.T232I	ENST00000277541	NM_017617.3	232	aCc/aTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	79	873	1	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
ATRX	546	MSKCC	GRCh37	X	76937362	76937362	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	50	430	0	ENST00000373344.5:c.3386T>G	p.Leu1129Arg	p.L1129R	ENST00000373344	NM_000489.3	1129	cTg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	88	356	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ATM	472	MSKCC	GRCh37	11	108143548	108143548	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	83	342	0	ENST00000278616.4:c.3253G>C	p.Val1085Leu	p.V1085L	ENST00000278616	NM_000051.3	1085	Gtt/Ctt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582953	95582953	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	97	290	0	ENST00000343455.3:c.1589A>C	p.Lys530Thr	p.K530T	ENST00000343455	NM_177438.2	530	aAa/aCa																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675094	40675094	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	196	561	0	ENST00000249776.8:c.58A>G	p.Thr20Ala	p.T20A	ENST00000249776	NM_033286.3	20	Aca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578318	7578884	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAAGCAACTGGAAGACGGCAGCAAAGAAACAAACATGCGTAAGCACCTCCTGCAACCCACTAGCGAGCTAGAGAGAGTTGGCGTCTACACCTCAGGAGCTTTTCTTTTTTTTTTTTTTTTTTGAGATAGGGTCTTGCTCTGTCACTCAGGCTGGAGCACAGTGGTGTGATCACAGCTCACTGCAGCCTCCATCTCCTGGCCTCAAGTGATCTTCCCACCTCAGCCTCCTAAGTGGCTGGGACTATAGGTGTGCACCACCATGCCTGGCTAATTTTTT	CCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAAGCAACTGGAAGACGGCAGCAAAGAAACAAACATGCGTAAGCACCTCCTGCAACCCACTAGCGAGCTAGAGAGAGTTGGCGTCTACACCTCAGGAGCTTTTCTTTTTTTTTTTTTTTTTTGAGATAGGGTCTTGCTCTGTCACTCAGGCTGGAGCACAGTGGTGTGATCACAGCTCACTGCAGCCTCCATCTCCTGGCCTCAAGTGATCTTCCCACCTCAGCCTCCTAAGTGGCTGGGACTATAGGTGTGCACCACCATGCCTGGCTAATTTTTT	-			P-0035718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	77	388	0	ENST00000269305.4:c.376-330_560-29del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
TSC1	7248	MSKCC	GRCh37	9	135786421	135786421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	114	379	0	ENST00000298552.3:c.1109C>T	p.Ser370Leu	p.S370L	ENST00000298552	NM_001162426.1	370	tCa/tTa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405630	139405630	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	182	647	0	ENST00000277541.6:c.2561C>G	p.Ser854Cys	p.S854C	ENST00000277541	NM_017617.3	854	tCc/tGc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1314912	1314912	+	downstream_gene_variant	3'Flank	SNP	G	G	C			P-0035718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	90	314	0				ENST00000381566																																																																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	138	345	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113272	209113272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	200	375	0	ENST00000345146.2:c.235G>A	p.Asp79Asn	p.D79N	ENST00000345146	NM_005896.2	79	Gat/Aat																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45423008	45423008	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	145	362	0	ENST00000262160.6:c.120G>A	p.Trp40Ter	p.W40*	ENST00000262160	NM_005901.5	40	tgG/tgA																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238969	5238969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144851217		P-0035723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	19	299	0	ENST00000357368.4:c.1810G>A	p.Ala604Thr	p.A604T	ENST00000357368	NM_002850.3	604	Gcc/Acc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5239055	5239055	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185326821		P-0035723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	264	452	0	ENST00000357368.4:c.1724C>T	p.Pro575Leu	p.P575L	ENST00000357368	NM_002850.3	575	cCg/cTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960062	134960062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	130	476	0	ENST00000398015.3:c.2419G>A	p.Val807Ile	p.V807I	ENST00000398015	NM_004441.4	807	Gtt/Att																																																																															
APC	324	MSKCC	GRCh37	5	112175172	112175172	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	133	179	0	ENST00000257430.4:c.3881delA	p.Gln1294ArgfsTer11	p.Q1294Rfs*11	ENST00000257430	NM_000038.5	1294	cAg/cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	175	461	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0035724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	98	289	0	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
ATM	472	MSKCC	GRCh37	11	108143462	108143462	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0035724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	109	443	0	ENST00000278616.4:c.3167C>G	p.Ser1056Ter	p.S1056*	ENST00000278616	NM_000051.3	1056	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0035725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	26	611	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247190	153247190	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	22	303	0	ENST00000281708.4:c.1612C>T	p.Gln538Ter	p.Q538*	ENST00000281708	NM_033632.3	538	Cag/Tag																																																																															
RB1	5925	MSKCC	GRCh37	13	49054168	49054168	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	15	272	0	ENST00000267163.4:c.2748G>C	p.Met916Ile	p.M916I	ENST00000267163	NM_000321.2	916	atG/atC																																																																															
AR	367	MSKCC	GRCh37	X	66765265	66765265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	14	248	0	ENST00000374690.3:c.277G>A	p.Glu93Lys	p.E93K	ENST00000374690	NM_000044.3	93	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0035727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	184	267	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68845608	68845610	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0035727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	482	408	0	ENST00000261769.5:c.855_857del	p.Ala286del	p.A286del	ENST00000261769	NM_004360.3	285	aCAGcc/acc																																																																															
BTK	695	MSKCC	GRCh37	X	100613307	100613307	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	68	385	0	ENST00000308731.7:c.1093A>T	p.Asn365Tyr	p.N365Y	ENST00000308731	NM_000061.2	365	Aac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0035728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	246	583	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991706	72991706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	116	146	1	ENST00000268489.5:c.2339C>T	p.Ala780Val	p.A780V	ENST00000268489	NM_006885.3	780	gCg/gTg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675668	86675668	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0035728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	36	226	1	ENST00000274376.6:c.2603+1G>A		p.X868_splice	ENST00000274376	NM_002890.2	868																																																																																
APC	324	MSKCC	GRCh37	5	112175331	112175332	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGG			P-0035728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	76	200	0	ENST00000257430.4:c.4043_4046dup	p.His1349GlnfsTer6	p.H1349Qfs*6	ENST00000257430	NM_000038.5	1347	gcc/gcCAGGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0035733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	96	492	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0035733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	84	761	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041657	47041657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	96	329	0	ENST00000329236.7:c.1648G>T	p.Glu550Ter	p.E550*	ENST00000329236	NM_001204466.1	550	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0035737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	616	478	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0035737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	378	773	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673671	30673671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	174	772	0	ENST00000376406.3:c.3289G>A	p.Glu1097Lys	p.E1097K	ENST00000376406	NM_014641.2	1097	Gag/Aag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448571	89448571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	196	485	2	ENST00000336596.2:c.1535G>A	p.Arg512Gln	p.R512Q	ENST00000336596	NM_005233.5	512	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175720	112175720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	154	316	0	ENST00000257430.4:c.4429C>T	p.Gln1477Ter	p.Q1477*	ENST00000257430	NM_000038.5	1477	Cag/Tag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061228	38061228	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	210	553	0	ENST00000250448.2:c.761del	p.Phe254SerfsTer67	p.F254Sfs*67	ENST00000250448	NM_004496.3	254	tTc/tc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456351	32456351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	279	719	1	ENST00000332351.3:c.541G>A	p.Gly181Ser	p.G181S	ENST00000332351	NM_024426.4	181	Ggt/Agt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911544	32911544	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0035746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	86	338	0	ENST00000380152.3:c.3052A>T	p.Lys1018Ter	p.K1018*	ENST00000380152		1018	Aag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0035748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	135	717	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0035748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	455	384	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29496924	29496927	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-			P-0035748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	107	410	0	ENST00000358273.4:c.499_502delTGTT	p.Cys167GlnfsTer10	p.C167Qfs*10	ENST00000358273	NM_001042492.2	165	acTGTT/ac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827956	72827956	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	68	979	0	ENST00000268489.5:c.8625G>C	p.Leu2875Phe	p.L2875F	ENST00000268489	NM_006885.3	2875	ttG/ttC																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828038	72828038	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	89	1009	0	ENST00000268489.5:c.8543G>C	p.Gly2848Ala	p.G2848A	ENST00000268489	NM_006885.3	2848	gGa/gCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	101	536	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0035751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	124	648	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
AR	367	MSKCC	GRCh37	X	66905930	66905930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	55	551	0	ENST00000374690.3:c.1847G>A	p.Arg616His	p.R616H	ENST00000374690	NM_000044.3	616	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	80	267	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120528	70120528	+	stop_lost	Nonstop_Mutation	SNP	A	A	C			P-0035751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	91	814	0	ENST00000245479.2:c.1530A>C	p.Ter510CysextTer49	p.*510Cext*49	ENST00000245479	NM_000346.3	510	tgA/tgC																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185167732	185167732	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	127	598	0	ENST00000265026.3:c.1055C>G	p.Pro352Arg	p.P352R	ENST00000265026	NM_004721.4	352	cCt/cGt																																																																															
EZH2	2146	MSKCC	GRCh37	7	148525919	148525919	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	77	620	1	ENST00000320356.2:c.538C>T	p.Gln180Ter	p.Q180*	ENST00000320356	NM_004456.4	180	Caa/Taa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25994410	25994410	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	14	323	0	ENST00000435504.4:c.404-1G>T		p.X135_splice	ENST00000435504		135																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	253	405	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	150	802	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	222	665	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	131	685	2	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	218	1080	11	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	222	1022	0	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	43	603	1	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716032	243716032	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	109	643	0	ENST00000263826.5:c.1162C>T	p.Arg388Cys	p.R388C	ENST00000263826	NM_005465.4	388	Cgc/Tgc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	65	646	4	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178095	56178095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	114	393	0	ENST00000399503.3:c.3068G>A	p.Arg1023His	p.R1023H	ENST00000399503	NM_005921.1	1023	cGc/cAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	208	525	9	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099579	157099579	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	29	90	0	ENST00000346085.5:c.521del	p.Pro174ArgfsTer6	p.P174Rfs*6	ENST00000346085	NM_020732.3	172	gaC/ga																																																																															
TET2	54790	MSKCC	GRCh37	4	106162524	106162524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	119	351	1	ENST00000380013.4:c.3442delT	p.Tyr1148IlefsTer4	p.Y1148Ifs*4	ENST00000380013	NM_001127208.2	1146	ccT/cc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	218	562	8	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	15	85	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202909	16202909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	164	629	0	ENST00000375759.3:c.617G>A	p.Arg206His	p.R206H	ENST00000375759	NM_015001.2	206	cGc/cAc																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27840049	27840049	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	136	549	0	ENST00000328488.2:c.45A>T	p.Lys15Asn	p.K15N	ENST00000328488	NM_003533.2	15	aaA/aaT																																																																															
CDC73	79577	MSKCC	GRCh37	1	193094309	193094309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	149	654	1	ENST00000367435.3:c.199G>A	p.Val67Met	p.V67M	ENST00000367435	NM_024529.4	67	Gtg/Atg																																																																															
NF2	4771	MSKCC	GRCh37	22	30050708	30050708	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	113	449	0	ENST00000338641.4:c.514del	p.Arg172GlyfsTer2	p.R172Gfs*2	ENST00000338641	NM_000268.3	170	ccA/cc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257899	19257899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	174	1038	4	ENST00000162023.5:c.487G>A	p.Ala163Thr	p.A163T	ENST00000162023		163	Gcc/Acc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324892	31324892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs765875917		P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	55	397	0	ENST00000412585.2:c.44del	p.Ala15GlyfsTer5	p.A15Gfs*5	ENST00000412585	NM_005514.6	15	gCg/gg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	218	854	7	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	205	866	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30099946	30099946	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	84	512	0	ENST00000331968.5:c.1672+2T>C		p.X558_splice	ENST00000331968	NM_002742.2	558																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	129	981	2	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779419	3779419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	164	1069	2	ENST00000262367.5:c.5629G>A	p.Val1877Met	p.V1877M	ENST00000262367	NM_004380.2	1877	Gtg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	121	799	3	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38631981	38631981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	76	790	1	ENST00000299084.4:c.471delT	p.Gln158SerfsTer16	p.Q158Sfs*16	ENST00000299084	NM_152594.2	156	cTt/ct																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933438	49933438	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	139	853	1	ENST00000296474.3:c.2752delC	p.Leu918CysfsTer18	p.L918Cfs*18	ENST00000296474	NM_002447.2	918	Ctg/tg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286238	66286238	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	162	623	0	ENST00000273854.3:c.1448del	p.Asn483ThrfsTer18	p.N483Tfs*18	ENST00000273854	NM_004439.5	483	aAc/ac																																																																															
B2M	567	MSKCC	GRCh37	15	45007681	45007681	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	180	565	1	ENST00000558401.1:c.128T>C	p.Leu43Pro	p.L43P	ENST00000558401	NM_004048.2	43	cTg/cCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445149	49445149	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	175	873	4	ENST00000301067.7:c.2317delC	p.Gln773SerfsTer157	p.Q773Sfs*157	ENST00000301067	NM_003482.3	773	Cag/ag																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978662	70978662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	138	915	0	ENST00000276594.2:c.991G>A	p.Ala331Thr	p.A331T	ENST00000276594	NM_024504.3	331	Gcc/Acc																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983136	149983136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	245	853	1	ENST00000253339.5:c.3122C>T	p.Pro1041Leu	p.P1041L	ENST00000253339		1041	cCt/cTt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864218	57864218	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	124	678	0	ENST00000228682.2:c.1700del	p.Pro567LeufsTer46	p.P567Lfs*46	ENST00000228682	NM_005269.2	565	ttC/tt																																																																															
CASP8	841	MSKCC	GRCh37	2	202151315	202151315	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	106	491	0	ENST00000358485.4:c.1615T>C	p.Ter539ArgextTer88	p.*539Rext*88	ENST00000358485	NM_001080125.1	539	Tga/Cga																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026115	71026115	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	199	569	0	ENST00000318789.4:c.1507C>T	p.Arg503Ter	p.R503*	ENST00000318789	NM_032682.5	503	Cga/Tga																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793888	89793888	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	149	433	0	ENST00000336032.3:c.961del	p.Thr321ArgfsTer16	p.T321Rfs*16	ENST00000336032	NM_006813.2	319	ttA/tt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821889	72821890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	82	400	1	ENST00000268489.5:c.10285dup	p.Arg3429ProfsTer2	p.R3429Pfs*2	ENST00000268489	NM_006885.3	3429	cgt/cCgt																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225480	26225480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	90	409	0	ENST00000360408.1:c.98C>T	p.Thr33Met	p.T33M	ENST00000360408	NM_003532.2	33	aCg/aTg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532613	63532613	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	201	964	0	ENST00000307078.5:c.1966C>T	p.Arg656Ter	p.R656*	ENST00000307078	NM_004655.3	656	Cga/Tga																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621901	1621901	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	137	890	0	ENST00000344749.5:c.891del	p.Gly298GlufsTer96	p.G298Efs*96	ENST00000344749	NM_001136139.2	297	ccC/cc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174884	11174884	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	175	677	0	ENST00000361445.4:c.7150A>G	p.Thr2384Ala	p.T2384A	ENST00000361445	NM_004958.3	2384	Acc/Gcc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023462	27023462	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	158	688	2	ENST00000324856.7:c.572del	p.Gly191AlafsTer41	p.G191Afs*41	ENST00000324856	NM_006015.4	190	Ggg/gg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845453	156845453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	142	979	0	ENST00000524377.1:c.1496A>G	p.Asp499Gly	p.D499G	ENST00000524377	NM_002529.3	499	gAt/gGt																																																																															
NUF2	83540	MSKCC	GRCh37	1	163318827	163318827	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	149	452	0	ENST00000271452.3:c.1217A>G	p.Gln406Arg	p.Q406R	ENST00000271452	NM_145697.2	406	cAa/cGa																																																																															
TET1	80312	MSKCC	GRCh37	10	70412348	70412348	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	81	323	0	ENST00000373644.4:c.4458G>C	p.Lys1486Asn	p.K1486N	ENST00000373644	NM_030625.2	1486	aaG/aaC																																																																															
WT1	7490	MSKCC	GRCh37	11	32417817	32417817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	128	518	0	ENST00000332351.3:c.1235G>A	p.Ser412Asn	p.S412N	ENST00000332351	NM_024426.4	412	aGc/aAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347134	347134	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200996293		P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	188	1140	3	ENST00000262320.3:c.1877C>T	p.Ala626Val	p.A626V	ENST00000262320	NM_003502.3	626	gCg/gTg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396838	396838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	50	772	1	ENST00000262320.3:c.188G>A	p.Arg63His	p.R63H	ENST00000262320	NM_003502.3	63	cGc/cAc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647828	3647828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	135	958	2	ENST00000294008.3:c.1336G>A	p.Ala446Thr	p.A446T	ENST00000294008	NM_032444.2	446	Gcc/Acc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67670697	67670697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	118	520	0	ENST00000264010.4:c.1942G>A	p.Ala648Thr	p.A648T	ENST00000264010	NM_006565.3	648	Gcc/Acc																																																																															
CDH1	999	MSKCC	GRCh37	16	68856089	68856089	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	141	704	0	ENST00000261769.5:c.1900del	p.Ala634ArgfsTer19	p.A634Rfs*19	ENST00000261769	NM_004360.3	633	Ggg/gg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831848	72831848	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	84	1162	1	ENST00000268489.5:c.4733A>G	p.Gln1578Arg	p.Q1578R	ENST00000268489	NM_006885.3	1578	cAa/cGa																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7990690	7990690	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs201575829		P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	205	821	0	ENST00000319144.4:c.71T>C	p.Leu24Pro	p.L24P	ENST00000319144	NM_001139.2	24	cTg/cCg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961331	15961331	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	210	712	0	ENST00000268712.3:c.6058C>T	p.Gln2020Ter	p.Q2020*	ENST00000268712	NM_006311.3	2020	Cag/Tag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15995271	15995271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	84	695	0	ENST00000268712.3:c.2922G>T	p.Glu974Asp	p.E974D	ENST00000268712	NM_006311.3	974	gaG/gaT																																																																															
NF1	4763	MSKCC	GRCh37	17	29552242	29552242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	224	656	0	ENST00000358273.4:c.1975C>T	p.Arg659Trp	p.R659W	ENST00000358273	NM_001042492.2	659	Cgg/Tgg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63553964	63553964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	156	539	0	ENST00000307078.5:c.775G>A	p.Ala259Thr	p.A259T	ENST00000307078	NM_004655.3	259	Gcg/Acg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39620649	39620649	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	186	563	0	ENST00000262039.4:c.2047C>T	p.Gln683Ter	p.Q683*	ENST00000262039	NM_002647.2	683	Cag/Tag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2214480	2214480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	43	729	3	ENST00000398665.3:c.1808G>A	p.Arg603His	p.R603H	ENST00000398665	NM_032482.2	603	cGc/cAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152036	11152038	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	81	531	0	ENST00000344626.4:c.4228_4230del	p.Ser1410del	p.S1410del	ENST00000344626	NM_003072.3	1408	aaATCa/aaa																																																																															
ALK	238	MSKCC	GRCh37	2	30143219	30143219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	48	758	0	ENST00000389048.3:c.307G>A	p.Gly103Arg	p.G103R	ENST00000389048	NM_004304.4	103	Ggg/Agg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702208	47702208	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	174	626	0	ENST00000233146.2:c.1804C>G	p.Leu602Val	p.L602V	ENST00000233146	NM_000251.2	602	Cta/Gta																																																																															
CASP8	841	MSKCC	GRCh37	2	202131424	202131424	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	153	608	0	ENST00000358485.4:c.392T>C	p.Leu131Pro	p.L131P	ENST00000358485	NM_001080125.1	131	cTg/cCg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225343002	225343002	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1221	95	886	0	ENST00000264414.4:c.2090A>T	p.Asp697Val	p.D697V	ENST00000264414	NM_003590.4	697	gAc/gTc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37059035	37059036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	329	574	0	ENST00000231790.2:c.832dup	p.Thr278AsnfsTer29	p.T278Nfs*29	ENST00000231790	NM_000249.3	277	gaa/gAaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41268763	41268763	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	221	588	0	ENST00000349496.5:c.1005del	p.Lys335AsnfsTer10	p.K335Nfs*10	ENST00000349496	NM_001904.3	334	gAa/ga																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933508	49933509	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	190	1155	0	ENST00000296474.3:c.2681_2682del	p.Val894GlyfsTer9	p.V894Gfs*9	ENST00000296474	NM_002447.2	894	gTG/g																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916660	178916660	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	144	446	0	ENST00000263967.3:c.47T>C	p.Met16Thr	p.M16T	ENST00000263967	NM_006218.2	16	aTg/aCg																																																																															
KDR	3791	MSKCC	GRCh37	4	55964878	55964878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	96	438	0	ENST00000263923.4:c.2359C>T	p.Arg787Trp	p.R787W	ENST00000263923	NM_002253.2	787	Cgg/Tgg																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84390219	84390219	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	195	611	0	ENST00000321945.7:c.562T>A	p.Ser188Thr	p.S188T	ENST00000321945	NM_139076.2	188	Tcc/Acc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629490	187629490	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200350035		P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	281	838	1	ENST00000441802.2:c.1492G>A	p.Val498Met	p.V498M	ENST00000441802	NM_005245.3	498	Gtg/Atg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79968633	79968633	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201336852		P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	169	560	1	ENST00000265081.6:c.983G>A	p.Arg328Gln	p.R328Q	ENST00000265081	NM_002439.4	328	cGg/cAg																																																																															
SESN1	27244	MSKCC	GRCh37	6	109311961	109311961	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	187	783	0	ENST00000436639.2:c.1311del	p.Lys437AsnfsTer38	p.K437Nfs*38	ENST00000436639	NM_014454.2	437	aaA/aa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005399	150005399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	70	780	0	ENST00000253339.5:c.826C>T	p.Arg276Cys	p.R276C	ENST00000253339		276	Cgc/Tgc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522481	157522481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	170	874	0	ENST00000346085.5:c.4753C>T	p.Pro1585Ser	p.P1585S	ENST00000346085	NM_020732.3	1585	Ccc/Tcc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877042	151877042	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	34	519	0	ENST00000262189.6:c.7319C>A	p.Pro2440His	p.P2440H	ENST00000262189	NM_170606.2	2440	cCt/cAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877794	151877794	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	104	372	0	ENST00000262189.6:c.7149+2T>C		p.X2383_splice	ENST00000262189	NM_170606.2	2383																																																																																
AMER1	139285	MSKCC	GRCh37	X	63412427	63412427	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	32	588	0	ENST00000330258.3:c.740C>A	p.Pro247Gln	p.P247Q	ENST00000330258	NM_152424.3	247	cCa/cAa																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	161	688	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42860345	42860345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	201	721	0	ENST00000398585.3:c.532G>A	p.Gly178Ser	p.G178S	ENST00000398585	NM_001135099.1	178	Ggc/Agc																																																																															
TET1	80312	MSKCC	GRCh37	10	70333041	70333041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	225	799	0	ENST00000373644.4:c.946G>T	p.Ala316Ser	p.A316S	ENST00000373644	NM_030625.2	316	Gct/Tct																																																																															
ATM	472	MSKCC	GRCh37	11	108127041	108127041	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0035756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	164	555	0	ENST00000278616.4:c.2224A>T	p.Lys742Ter	p.K742*	ENST00000278616	NM_000051.3	742	Aag/Tag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434584	99434585	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0035756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	130	563	2	ENST00000268035.6:c.671_672delinsTT	p.Cys224Phe	p.C224F	ENST00000268035	NM_000875.3	224	tGC/tTT																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25973220	25973220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	151	488	0	ENST00000435504.4:c.1205A>G	p.Lys402Arg	p.K402R	ENST00000435504		402	aAg/aGg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520257	9520257	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	118	420	0	ENST00000353224.5:c.2012C>A	p.Ser671Ter	p.S671*	ENST00000353224	NM_177990.2	671	tCa/tAa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0035785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	66	747	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	41	723	0	ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625159	69625159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	43	846	1	ENST00000334134.2:c.634C>T	p.Arg212Trp	p.R212W	ENST00000334134	NM_005247.2	212	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492794	56492794	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	48	701	0	ENST00000407977.2:c.145A>G	p.Arg49Gly	p.R49G	ENST00000407977		49	Aga/Gga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974744	21974770	+	inframe_deletion	In_Frame_Del	DEL	ACCTCCTCTACCCGACCCCGGGCCGCG	ACCTCCTCTACCCGACCCCGGGCCGCG	-			P-0035785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	14	383	0	ENST00000304494.5:c.57_83del	p.Ala20_Val28del	p.A20_V28del	ENST00000304494	NM_000077.4	19	gcCGCGGCCCGGGGTCGGGTAGAGGAGGTg/gcg																																																																															
ATM	472	MSKCC	GRCh37	11	108175549	108175549	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	132	440	0	ENST00000278616.4:c.5644C>T	p.Arg1882Ter	p.R1882*	ENST00000278616	NM_000051.3	1882	Cga/Tga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2124282	2124282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	245	1018	1	ENST00000219476.3:c.2437G>A	p.Val813Met	p.V813M	ENST00000219476	NM_000548.3	813	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	205	938	0	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101026	41101026	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	72	757	0	ENST00000373198.4:c.1330T>G	p.Ser444Ala	p.S444A	ENST00000373198	NM_133170.3	444	Tcc/Gcc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0035789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	101	389	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099762	157099762	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0035789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	63	418	0	ENST00000346085.5:c.699C>G	p.Tyr233Ter	p.Y233*	ENST00000346085	NM_020732.3	233	taC/taG																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38172206	38172206	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0035789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	386	522	0	ENST00000317025.8:c.2201C>G	p.Ser734Ter	p.S734*	ENST00000317025	NM_023034.1	734	tCa/tGa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399222	139399222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	95	950	0	ENST00000277541.6:c.4921C>T	p.Pro1641Ser	p.P1641S	ENST00000277541	NM_017617.3	1641	Cct/Tct																																																																															
STK11	6794	MSKCC	GRCh37	19	1221995	1221995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	77	521	0	ENST00000326873.7:c.910C>T	p.Arg304Trp	p.R304W	ENST00000326873	NM_000455.4	304	Cgg/Tgg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390793	139390793	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	83	684	0	ENST00000277541.6:c.7398delG	p.Ser2467ArgfsTer10	p.S2467Rfs*10	ENST00000277541	NM_017617.3	2466	acG/ac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399474	139399474	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	122	672	0	ENST00000277541.6:c.4669G>T	p.Asp1557Tyr	p.D1557Y	ENST00000277541	NM_017617.3	1557	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0035707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	276	548	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0035707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	111	252	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0035707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	187	445	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112924344	112924344	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	130	442	0	ENST00000351677.2:c.1290C>A	p.Ser430Arg	p.S430R	ENST00000351677	NM_002834.3	430	agC/agA																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482864	67482864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	198	474	0	ENST00000327367.4:c.1268G>C	p.Ser423Thr	p.S423T	ENST00000327367	NM_005902.3	423	aGt/aCt																																																																															
BLM	641	MSKCC	GRCh37	15	91358405	91358405	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	153	583	0	ENST00000355112.3:c.4150C>G	p.His1384Asp	p.H1384D	ENST00000355112	NM_000057.2	1384	Cat/Gat																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372034	45372034	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	298	442	0	ENST00000262160.6:c.1135G>A	p.Gly379Ser	p.G379S	ENST00000262160	NM_005901.5	379	Ggc/Agc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256820	19256820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	50	250	0	ENST00000162023.5:c.893G>A	p.Ser298Asn	p.S298N	ENST00000162023		298	aGc/aAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214710	36214710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	202	464	0	ENST00000222270.7:c.3136C>T	p.Arg1046Cys	p.R1046C	ENST00000222270	NM_014727.1	1046	Cgc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510127	187510127	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	100	419	0	ENST00000441802.2:c.13386C>G	p.Ile4462Met	p.I4462M	ENST00000441802	NM_005245.3	4462	atC/atG																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271388	26271388	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	177	441	0	ENST00000305910.3:c.225C>G	p.Ile75Met	p.I75M	ENST00000305910	NM_003534.2	75	atC/atG																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412196	63412196	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	295	418	0	ENST00000330258.3:c.971C>A	p.Ser324Ter	p.S324*	ENST00000330258	NM_152424.3	324	tCa/tAa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0035713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	24	368	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916929	178916937	+	inframe_deletion	In_Frame_Del	DEL	GGCAACCGT	GGCAACCGT	-			P-0035714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	75	462	0	ENST00000263967.3:c.317_325delGCAACCGTG	p.Gly106_Arg108del	p.G106_R108del	ENST00000263967	NM_006218.2	106	GGCAACCGT/-																																																																															
CBFB	865	MSKCC	GRCh37	16	67063669	67063669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	152	348	0	ENST00000412916.2:c.118C>T	p.Arg40Cys	p.R40C	ENST00000412916		40	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859690	151859690	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	79	403	0	ENST00000262189.6:c.10972C>T	p.Gln3658Ter	p.Q3658*	ENST00000262189	NM_170606.2	3658	Caa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151864343	151864344	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	433	606	0	ENST00000262189.6:c.9637dup	p.Ser3213PhefsTer3	p.S3213Ffs*3	ENST00000262189	NM_170606.2	3213	tca/tTca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	124	450	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0035735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	100	332	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0035735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	181	619	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29508439	29508439	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0035735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	17	243	0	ENST00000358273.4:c.587-1G>C		p.X196_splice	ENST00000358273	NM_001042492.2	196																																																																																
CHEK2	11200	MSKCC	GRCh37	22	29115464	29115464	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	112	349	0	ENST00000328354.6:c.602T>G	p.Phe201Cys	p.F201C	ENST00000328354	NM_007194.3	201	tTt/tGt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620464	52620464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	127	491	1	ENST00000394830.3:c.3289G>A	p.Glu1097Lys	p.E1097K	ENST00000394830	NM_018313.4	1097	Gaa/Aaa																																																																															
TET2	54790	MSKCC	GRCh37	4	106157132	106157132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	113	409	0	ENST00000380013.4:c.2033G>T	p.Gly678Val	p.G678V	ENST00000380013	NM_001127208.2	678	gGc/gTc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754604	57754604	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	140	458	0	ENST00000274289.3:c.443A>G	p.Tyr148Cys	p.Y148C	ENST00000274289	NM_006622.3	148	tAc/tGc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207132	1207134	+	frameshift_variant	Frame_Shift_Ins	INS	AGG	AGG	CTCC			P-0035735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	163	751	0	ENST00000326873.7:c.220_222delinsCTCC	p.Arg74LeufsTer89	p.R74Lfs*89	ENST00000326873	NM_000455.4	74	AGG/CTCC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	96	574	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0035739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	62	389	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0035739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	320	769	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0035739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	63	383	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453150	140453150	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	73	406	0	ENST00000288602.6:c.1785T>G	p.Phe595Leu	p.F595L	ENST00000288602	NM_004333.4	595	ttT/ttG																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115262339	115262339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	107	412	0	ENST00000438362.2:c.2215G>A	p.Gly739Arg	p.G739R	ENST00000438362	NM_001242891.1	739	Gga/Aga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	495130	495130	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	95	452	0	ENST00000399788.2:c.176C>G	p.Pro59Arg	p.P59R	ENST00000399788	NM_001042603.1	59	cCt/cGt																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281935	49281935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	338	817	0	ENST00000282018.3:c.982G>A	p.Ala328Thr	p.A328T	ENST00000282018	NM_020377.2	328	Gca/Aca																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805772	46805772	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	299	672	0	ENST00000290295.7:c.184C>T	p.Gln62Ter	p.Q62*	ENST00000290295	NM_006361.5	62	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	84	765	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673359	30673359	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs143258964		P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	62	973	0	ENST00000376406.3:c.3601A>C	p.Thr1201Pro	p.T1201P	ENST00000376406	NM_014641.2	1201	Aca/Cca																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068357	26068357	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	53	556	0	ENST00000435504.4:c.133G>T	p.Glu45Ter	p.E45*	ENST00000435504		45	Gaa/Taa																																																																															
ALK	238	MSKCC	GRCh37	2	29606679	29606679	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs865931787		P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	32	651	0	ENST00000389048.3:c.1201C>T	p.Arg401Ter	p.R401*	ENST00000389048	NM_004304.4	401	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	28	570	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
MET	4233	MSKCC	GRCh37	7	116418997	116418997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	21	316	0	ENST00000397752.3:c.3508C>T	p.Arg1170Ter	p.R1170*	ENST00000397752	NM_000245.2	1170	Cga/Tga																																																																															
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	77	570	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	38	802	0	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa																																																																															
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519945		P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	39	608	0	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473635	67473635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	84	721	0	ENST00000327367.4:c.715G>A	p.Glu239Lys	p.E239K	ENST00000327367	NM_005902.3	239	Gag/Aag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680780	88680780	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	57	768	0	ENST00000360948.2:c.477G>T	p.Gln159His	p.Q159H	ENST00000360948	NM_001012338.2	159	caG/caT																																																																															
RET	5979	MSKCC	GRCh37	10	43615593	43615593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	39	687	1	ENST00000355710.3:c.2672C>T	p.Ser891Leu	p.S891L	ENST00000355710	NM_020975.4	891	tCg/tTg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149447833	149447833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	45	792	0	ENST00000286301.3:c.1571C>T	p.Ser524Phe	p.S524F	ENST00000286301	NM_005211.3	524	tCc/tTc																																																																															
ATR	545	MSKCC	GRCh37	3	142281952	142281952	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	32	390	0	ENST00000350721.4:c.293-1G>T		p.X98_splice	ENST00000350721	NM_001184.3	98																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134670340	134670340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	30	512	2	ENST00000398015.3:c.251G>A	p.Arg84His	p.R84H	ENST00000398015	NM_004441.4	84	cGc/cAc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054649	5054649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	32	384	0	ENST00000381652.3:c.701G>A	p.Arg234His	p.R234H	ENST00000381652	NM_004972.3	234	cGc/cAc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45371711	45371711	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	41	481	0	ENST00000262160.6:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000262160	NM_005901.5	427	cGa/cAa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437463	110437463	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	49	775	2	ENST00000375856.3:c.938C>T	p.Ala313Val	p.A313V	ENST00000375856	NM_003749.2	313	gCc/gTc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81968046	81968046	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	23	382	0	ENST00000359376.3:c.2752A>C	p.Lys918Gln	p.K918Q	ENST00000359376	NM_002661.3	918	Aag/Cag																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40458326	40458326	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	12	256	0	ENST00000345506.4:c.1541A>C	p.Lys514Thr	p.K514T	ENST00000345506	NM_003152.3	514	aAa/aCa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761400	59761400	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	39	596	0	ENST00000259008.2:c.3007T>C	p.Ser1003Pro	p.S1003P	ENST00000259008	NM_032043.2	1003	Tca/Cca																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245519	153245519	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	31	488	0	ENST00000281708.4:c.1672T>C	p.Ser558Pro	p.S558P	ENST00000281708	NM_033632.3	558	Tct/Cct																																																																															
APC	324	MSKCC	GRCh37	5	112178904	112178904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	27	388	0	ENST00000257430.4:c.7613G>A	p.Arg2538Lys	p.R2538K	ENST00000257430	NM_000038.5	2538	aGa/aAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140508700	140508700	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	40	625	0	ENST00000288602.6:c.600T>G	p.Ile200Met	p.I200M	ENST00000288602	NM_004333.4	200	atT/atG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0035571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	74	334	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222198	5222198	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	122	580	0	ENST00000357368.4:c.3137T>A	p.Met1046Lys	p.M1046K	ENST00000357368	NM_002850.3	1046	aTg/aAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	183	503	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0035573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	253	709	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
RET	5979	MSKCC	GRCh37	10	43615035	43615035	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142318626		P-0035573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	72	664	1	ENST00000355710.3:c.2449C>T	p.Arg817Cys	p.R817C	ENST00000355710	NM_020975.4	817	Cgc/Tgc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913920	32913920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	174	516	0	ENST00000380152.3:c.5428G>A	p.Val1810Ile	p.V1810I	ENST00000380152		1810	Gtt/Att																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670664	134670664	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	163	752	1	ENST00000398015.3:c.575T>C	p.Phe192Ser	p.F192S	ENST00000398015	NM_004441.4	192	tTc/tCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0015218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	25	479	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0015218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1298	52	740	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52637598	52637601	+	frameshift_variant	Frame_Shift_Del	DEL	TCTC	TCTC	-			P-0015218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	42	348	0	ENST00000394830.3:c.2715_2718del	p.Glu908AsnfsTer6	p.E908Nfs*6	ENST00000394830	NM_018313.4	905	gaGAGA/ga																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522551	176522551	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774571806		P-0016986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	11	644	1	ENST00000292408.4:c.1648G>A	p.Val550Met	p.V550M	ENST00000292408	NM_213647.1	550	Gtg/Atg																																																																															
ATM	472	MSKCC	GRCh37	11	108200939	108200939	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0016986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	79	265	0	ENST00000278616.4:c.7308-2A>G		p.X2436_splice	ENST00000278616	NM_000051.3	2436																																																																																
ERF	2077	MSKCC	GRCh37	19	42752938	42752941	+	frameshift_variant	Frame_Shift_Del	DEL	GTCA	GTCA	-			P-0016986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	218	982	0	ENST00000222329.4:c.1323_1326del	p.Asp442SerfsTer88	p.D442Sfs*88	ENST00000222329	NM_006494.2	441	acTGAC/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	557	569	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0017058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	176	747	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439907	56439907	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0017058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	264	463	0	ENST00000407977.2:c.685C>T	p.Pro229Ser	p.P229S	ENST00000407977		229	Ccg/Tcg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603132	48603133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0017058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	108	432	0	ENST00000342988.3:c.1434_1435dup	p.Ala479GlufsTer26	p.A479Efs*26	ENST00000342988	NM_005359.5	478	ata/atAGa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857925	9857925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	28	783	0	ENST00000330684.3:c.3476G>A	p.Arg1159His	p.R1159H	ENST00000330684	NM_001134407.1	1159	cGc/cAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024614	31024614	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147456014		P-0021894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	30	765	1	ENST00000375687.4:c.4099G>A	p.Val1367Ile	p.V1367I	ENST00000375687	NM_015338.5	1367	Gtc/Atc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061168	38061195	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCCCGGCTGCTTCTCGCACTTGAAGC	GCCCCCGGCTGCTTCTCGCACTTGAAGC	-			P-0021894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	27	331	0	ENST00000250448.2:c.794_821del	p.Arg265ProfsTer47	p.R265Pfs*47	ENST00000250448	NM_004496.3	265	cGCTTCAAGTGCGAGAAGCAGCCGGGGGCc/cc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47705557	47705561	+	frameshift_variant	Frame_Shift_Del	DEL	AACTT	AACTT	-			P-0021894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	24	629	0	ENST00000233146.2:c.2358_2362del	p.Glu786AspfsTer11	p.E786Dfs*11	ENST00000233146	NM_000251.2	786	gAACTT/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	388	581	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	32	110	0	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7579558	7579559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAAT			P-0021967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	200	666	0	ENST00000269305.4:c.125_128dup	p.Met44PhefsTer9	p.M44Ffs*9	ENST00000269305	NM_001126112.2	43	ttg/ttATTTg																																																																															
SMO	6608	MSKCC	GRCh37	7	128851930	128851930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	84	719	0	ENST00000249373.3:c.2002C>T	p.Arg668Cys	p.R668C	ENST00000249373	NM_005631.4	668	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	486	717	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0022102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	357	693	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023769	27023769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	405	722	0	ENST00000324856.7:c.879del	p.Thr294ProfsTer69	p.T294Pfs*69	ENST00000324856	NM_006015.4	292	aCc/ac																																																																															
BLM	641	MSKCC	GRCh37	15	91358343	91358343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	132	539	0	ENST00000355112.3:c.4088C>T	p.Thr1363Ile	p.T1363I	ENST00000355112	NM_000057.2	1363	aCa/aTa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	30954186	30954186	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0022102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	174	364	0	ENST00000375687.4:c.58-1G>A		p.X20_splice	ENST00000375687	NM_015338.5	20																																																																																
ATRX	546	MSKCC	GRCh37	X	76931760	76931760	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	345	343	0	ENST00000373344.5:c.3770C>G	p.Thr1257Arg	p.T1257R	ENST00000373344	NM_000489.3	1257	aCa/aGa																																																																															
APC	324	MSKCC	GRCh37	5	112175858	112175858	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0022114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	169	297	1	ENST00000257430.4:c.4567A>T	p.Arg1523Ter	p.R1523*	ENST00000257430	NM_000038.5	1523	Aga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175875	112175905	+	frameshift_variant	Frame_Shift_Del	DEL	TCAGGAAAATGACAATGGGAATGAAACAGAA	TCAGGAAAATGACAATGGGAATGAAACAGAA	-			P-0022114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	133	282	0	ENST00000257430.4:c.4588_4618del	p.Glu1530SerfsTer25	p.E1530Sfs*25	ENST00000257430	NM_000038.5	1528	gtTCAGGAAAATGACAATGGGAATGAAACAGAA/gt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671946	30671946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	415	764	0	ENST00000376406.3:c.5014C>A	p.Pro1672Thr	p.P1672T	ENST00000376406	NM_014641.2	1672	Cct/Act																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523534	106523534	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	33	348	0	ENST00000359195.3:c.2686G>T	p.Val896Leu	p.V896L	ENST00000359195	NM_002649.2	896	Gtg/Ttg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	630	918	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NEGR1	257194	MSKCC	GRCh37	1	71873161	71873161	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	115	648	0	ENST00000357731.5:c.1033A>G	p.Ile345Val	p.I345V	ENST00000357731	NM_173808.2	345	Ata/Gta																																																																															
POLE	5426	MSKCC	GRCh37	12	133245035	133245036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0022402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	150	1174	0	ENST00000320574.5:c.2079_2080insCT	p.Lys694LeufsTer99	p.K694Lfs*99	ENST00000320574	NM_006231.2	693	-/CT																																																																															
NUP93	9688	MSKCC	GRCh37	16	56867201	56867201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	323	863	0	ENST00000308159.5:c.1420G>A	p.Ala474Thr	p.A474T	ENST00000308159	NM_014669.4	474	Gca/Aca																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230918	66230918	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	47	586	0	ENST00000273854.3:c.2053G>A	p.Glu685Lys	p.E685K	ENST00000273854	NM_004439.5	685	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578409	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTGGGGGCAGCGCC	TGGTGGGGGCAGCGCC	-			P-0022402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	327	913	0	ENST00000269305.4:c.521_536del	p.Arg174MetfsTer68	p.R174Mfs*68	ENST00000269305	NM_001126112.2	174	aGGCGCTGCCCCCACCAt/at																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324690	31324690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	44	255	12	ENST00000412585.2:c.118G>A	p.Gly40Ser	p.G40S	ENST00000412585	NM_005514.6	40	Ggc/Agc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324674	31324674	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11546719		P-0022746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	24	293	6	ENST00000412585.2:c.134G>A	p.Arg45His	p.R45H	ENST00000412585	NM_005514.6	45	cGc/cAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2122251	2122251	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	277	720	0	ENST00000219476.3:c.2107T>A	p.Trp703Arg	p.W703R	ENST00000219476	NM_000548.3	703	Tgg/Agg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541699	187541699	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	107	546	0	ENST00000441802.2:c.6041A>C	p.Tyr2014Ser	p.Y2014S	ENST00000441802	NM_005245.3	2014	tAt/tCt																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031885	26031885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	52	313	0	ENST00000244661.2:c.404G>T	p.Arg135Ile	p.R135I	ENST00000244661	NM_003537.3	135	aGa/aTa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323286	31323286	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146555925		P-0022746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	13	168	0	ENST00000412585.2:c.703G>A	p.Ala235Thr	p.A235T	ENST00000412585	NM_005514.6	235	Gcg/Acg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289323	33289323	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	105	467	0	ENST00000374542.5:c.229C>T	p.Gln77Ter	p.Q77*	ENST00000374542	NM_001141970.1	77	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	434	969	0	ENST00000269305.4:c.725G>C	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	tGc/tCc																																																																															
APC	324	MSKCC	GRCh37	5	112175531	112175532	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	75	401	0	ENST00000257430.4:c.4241dup	p.Ser1415LysfsTer8	p.S1415Kfs*8	ENST00000257430	NM_000038.5	1414	gta/gTta																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125497638	125497638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	108	704	0	ENST00000428830.2:c.202G>A	p.Val68Ile	p.V68I	ENST00000428830	NM_001114121.2	68	Gta/Ata																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153253747	153253747	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0022889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	49	509	0	ENST00000281708.4:c.985+1G>T		p.X329_splice	ENST00000281708	NM_033632.3	329																																																																																
APC	324	MSKCC	GRCh37	5	112111417	112111417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	39	406	0	ENST00000257430.4:c.514C>T	p.Leu172Phe	p.L172F	ENST00000257430	NM_000038.5	172	Ctt/Ttt																																																																															
APC	324	MSKCC	GRCh37	5	112174188	112174189	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	76	561	0	ENST00000257430.4:c.2898dup	p.Val967CysfsTer3	p.V967Cfs*3	ENST00000257430	NM_000038.5	966	agt/agTt																																																																															
MET	4233	MSKCC	GRCh37	7	116371888	116371888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	108	648	3	ENST00000397752.3:c.1367G>A	p.Gly456Glu	p.G456E	ENST00000397752	NM_000245.2	456	gGg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	228	818	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	474	853	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0022989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	338	298	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864471	57864471	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	292	754	1	ENST00000228682.2:c.1948G>T	p.Ala650Ser	p.A650S	ENST00000228682	NM_005269.2	650	Gct/Tct																																																																															
CDK8	1024	MSKCC	GRCh37	13	26959408	26959408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	447	683	0	ENST00000381527.3:c.575C>T	p.Pro192Leu	p.P192L	ENST00000381527	NM_001260.1	192	cCa/cTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29701168	29701168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	128	391	0	ENST00000358273.4:c.8515G>A	p.Val2839Met	p.V2839M	ENST00000358273	NM_001042492.2	2839	Gtg/Atg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526558	31526558	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760078843		P-0022989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	263	860	0	ENST00000344624.3:c.482C>T	p.Pro161Leu	p.P161L	ENST00000344624		161	cCg/cTg																																																																															
TEK	7010	MSKCC	GRCh37	9	27206739	27206739	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147231791		P-0022989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	245	728	0	ENST00000380036.4:c.2524C>T	p.Arg842Cys	p.R842C	ENST00000380036	NM_000459.3	842	Cgc/Tgc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	331	649	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	248	766	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	68	553	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061317	38061317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	197	888	1	ENST00000250448.2:c.672C>A	p.Phe224Leu	p.F224L	ENST00000250448	NM_004496.3	224	ttC/ttA																																																																															
CASP8	841	MSKCC	GRCh37	2	202131490	202131490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	46	543	1	ENST00000358485.4:c.458G>A	p.Gly153Asp	p.G153D	ENST00000358485	NM_001080125.1	153	gGc/gAc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589753	69589753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	74	212	0	ENST00000168712.1:c.100G>A	p.Ala34Thr	p.A34T	ENST00000168712	NM_002007.2	34	Gca/Aca																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885919	111885934	+	frameshift_variant	Frame_Shift_Del	DEL	GTCTCCCAGGGCGATC	GTCTCCCAGGGCGATC	AT			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	153	671	3	ENST00000341259.2:c.1541_1556delinsAT	p.Gly514AspfsTer27	p.G514Dfs*27	ENST00000341259	NM_005475.2	514	gGTCTCCCAGGGCGATCc/gATc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107727	30107727	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	237	700	0	ENST00000331968.5:c.953A>G	p.Asn318Ser	p.N318S	ENST00000331968	NM_002742.2	318	aAc/aGc																																																																															
MAX	4149	MSKCC	GRCh37	14	65560425	65560425	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	101	380	1	ENST00000358664.4:c.171+1G>A		p.X57_splice	ENST00000358664	NM_002382.4	57																																																																																
FLCN	201163	MSKCC	GRCh37	17	17122332	17122332	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	108	446	1	ENST00000285071.4:c.1062+1G>A		p.X354_splice	ENST00000285071	NM_144997.5	354																																																																																
JAK3	3718	MSKCC	GRCh37	19	17955129	17955129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	235	883	2	ENST00000458235.1:c.98G>A	p.Arg33Gln	p.R33Q	ENST00000458235	NM_000215.3	33	cGg/cAg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18972915	18972915	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	236	844	1	ENST00000262803.5:c.2558del	p.Leu853Ter	p.L853*	ENST00000262803	NM_002911.3	852	Ttt/tt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26022405	26022405	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	134	499	0	ENST00000435504.4:c.253-1G>T		p.X85_splice	ENST00000435504		85																																																																																
IRS1	3667	MSKCC	GRCh37	2	227662116	227662116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	180	643	0	ENST00000305123.5:c.1339C>T	p.Pro447Ser	p.P447S	ENST00000305123	NM_005544.2	447	Ccg/Tcg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170013713	170013713	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	123	668	0	ENST00000295797.4:c.1432C>T	p.Gln478Ter	p.Q478*	ENST00000295797	NM_002740.5	478	Caa/Taa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902696	1902696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	241	832	0	ENST00000382891.5:c.315G>A	p.Met105Ile	p.M105I	ENST00000382891	NM_133335.3	105	atG/atA																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27777891	27777891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	79	461	1	ENST00000369163.2:c.40G>A	p.Gly14Ser	p.G14S	ENST00000369163	NM_003536.2	14	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	425	897	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0023385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	218	863	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372025	55372025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	163	821	4	ENST00000297316.4:c.715G>A	p.Ala239Thr	p.A239T	ENST00000297316	NM_022454.3	239	Gcc/Acc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873885	151873885	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	208	627	1	ENST00000262189.6:c.8653G>T	p.Glu2885Ter	p.E2885*	ENST00000262189	NM_170606.2	2885	Gaa/Taa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971023	21971024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	152	724	0	ENST00000304494.5:c.334dup	p.Arg112ProfsTer8	p.R112Pfs*8	ENST00000304494	NM_000077.4	112	cgt/cCgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576870	7576870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs876659384		P-0023529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	154	685	0	ENST00000269305.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000269305	NM_001126112.2	326	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0023529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	180	613	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630876	187630876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	53	535	0	ENST00000441802.2:c.106C>T	p.His36Tyr	p.H36Y	ENST00000441802	NM_005245.3	36	Cac/Tac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332645	153332645	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	25	600	0	ENST00000281708.4:c.311A>T	p.His104Leu	p.H104L	ENST00000281708	NM_033632.3	104	cAt/cTt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117679018	117679018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	36	553	0	ENST00000368508.3:c.3803T>C	p.Ile1268Thr	p.I1268T	ENST00000368508	NM_002944.2	1268	aTt/aCt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971098	+	stop_gained	Nonsense_Mutation	ONP	CCC	CCC	ACA			P-0023529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	245	536	0	ENST00000304494.5:c.260_262delinsTGT	p.Arg87_Glu88delinsLeuTer	p.R87_E88delinsL*	ENST00000304494	NM_000077.4	87	cGGGag/cTGTag																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250354	110250354	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	TCT			P-0023529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	459	768	0	ENST00000374672.4:c.321delinsAGA	p.Phe107LeufsTer8	p.F107Lfs*8	ENST00000374672	NM_004235.4	107	ttT/ttAGA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	404	710	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	156	664	0	ENST00000342988.3:c.1051G>T	p.Asp351Tyr	p.D351Y	ENST00000342988	NM_005359.5	351	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	206	754	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970969	21970969	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	199	623	0	ENST00000304494.5:c.389T>A	p.Leu130Gln	p.L130Q	ENST00000304494	NM_000077.4	130	cTg/cAg																																																																															
ATM	472	MSKCC	GRCh37	11	108160492	108160492	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	196	693	1	ENST00000278616.4:c.4400A>T	p.Asp1467Val	p.D1467V	ENST00000278616	NM_000051.3	1467	gAc/gTc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502167	157502203	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAGAGAAAGCTCTGGGTCGACCGATACCTCACCTT	CAGAGAGAAAGCTCTGGGTCGACCGATACCTCACCTT	-			P-0023635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	139	517	0	ENST00000346085.5:c.3202_3238del	p.Glu1068TrpfsTer50	p.E1068Wfs*50	ENST00000346085	NM_020732.3	1067	cCAGAGAGAAAGCTCTGGGTCGACCGATACCTCACCTTc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	145	571	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0023914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	158	351	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0023914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	49	377	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577552	7577553	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGCAGGA			P-0023914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	143	449	0	ENST00000269305.4:c.721_728dup	p.Met243IlefsTer7	p.M243Ifs*7	ENST00000269305	NM_001126112.2	243	atg/atTCCTGCATg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69032509	69032509	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	122	495	0	ENST00000288368.4:c.3583C>T	p.Arg1195Ter	p.R1195*	ENST00000288368	NM_024870.2	1195	Cga/Tga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061221	38061232	+	inframe_deletion	In_Frame_Del	DEL	GTTCTCGAACAT	GTTCTCGAACAT	-			P-0024117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	236	585	0	ENST00000250448.2:c.757_768del	p.Met253_Asn256del	p.M253_N256del	ENST00000250448	NM_004496.3	253	ATGTTCGAGAAC/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0024117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	243	621	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151841843	151841843	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	99	584	0	ENST00000262189.6:c.14298A>C	p.Lys4766Asn	p.K4766N	ENST00000262189	NM_170606.2	4766	aaA/aaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	645	950	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0024358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	343	924	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131923329	131923329	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	29	459	1	ENST00000265335.6:c.832C>T	p.Arg278Ter	p.R278*	ENST00000265335		278	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	138	242	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0024443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	158	605	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581243	48581243	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	277	571	0	ENST00000342988.3:c.547C>T	p.Gln183Ter	p.Q183*	ENST00000342988	NM_005359.5	183	Cag/Tag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	332	802	1	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579394	7579394	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	375	757	1	ENST00000269305.4:c.293del	p.Pro98LeufsTer25	p.P98Lfs*25	ENST00000269305	NM_001126112.2	98	cCt/ct																																																																															
STK40	83931	MSKCC	GRCh37	1	36814310	36814310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	140	499	0	ENST00000373129.3:c.730G>A	p.Val244Met	p.V244M	ENST00000373129	NM_032017.1	244	Gtg/Atg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40727105	40727105	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	260	576	0	ENST00000373198.4:c.3859A>G	p.Asn1287Asp	p.N1287D	ENST00000373198	NM_133170.3	1287	Aac/Gac																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71015123	71015123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	234	396	1	ENST00000318789.4:c.1807C>T	p.Arg603Trp	p.R603W	ENST00000318789	NM_032682.5	603	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112173971	112173972	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0024443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	94	384	0	ENST00000257430.4:c.2682_2683del	p.Ala896HisfsTer15	p.A896Hfs*15	ENST00000257430	NM_000038.5	894	GTg/g																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069031	5069031	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	56	287	1	ENST00000381652.3:c.1336G>T	p.Val446Phe	p.V446F	ENST00000381652	NM_004972.3	446	Gtc/Ttc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577375	64577375	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	310	726	0	ENST00000337652.1:c.207del	p.Asp70ThrfsTer49	p.D70Tfs*49	ENST00000337652	NM_130803.2	69	ccC/cc																																																																															
ATM	472	MSKCC	GRCh37	11	108196789	108196789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	165	308	0	ENST00000278616.4:c.6812C>G	p.Pro2271Arg	p.P2271R	ENST00000278616	NM_000051.3	2271	cCt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	66	583	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PAK1	5058	MSKCC	GRCh37	11	77066776	77066776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	32	492	0	ENST00000356341.3:c.709C>T	p.Arg237Trp	p.R237W	ENST00000356341	NM_002576.4	237	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108163450	108163450	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	38	608	0	ENST00000278616.4:c.4544del	p.Asn1515ThrfsTer28	p.N1515Tfs*28	ENST00000278616	NM_000051.3	1514	gAa/ga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533833	63533833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	29	497	1	ENST00000307078.5:c.1321G>A	p.Asp441Asn	p.D441N	ENST00000307078	NM_004655.3	441	Gat/Aat																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967912	93967912	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	44	553	0	ENST00000369303.4:c.2015C>G	p.Thr672Arg	p.T672R	ENST00000369303	NM_004440.3	672	aCa/aGa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061215	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCAGCCGTTCTCGAACATGTT	GCAGCCGTTCTCGAACATGTT	-			P-0025276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	132	507	0	ENST00000250448.2:c.754_774delAACATGTTCGAGAACGGCTGC	p.Asn252_Cys258del	p.N252_C258del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTGC/-																																																																															
PGR	5241	MSKCC	GRCh37	11	100922293	100922293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149186732		P-0025276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	132	370	0	ENST00000325455.5:c.2219G>A	p.Arg740Gln	p.R740Q	ENST00000325455	NM_001202474.3	740	cGa/cAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912277	32912277	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	168	519	0	ENST00000380152.3:c.3785C>A	p.Ser1262Ter	p.S1262*	ENST00000380152		1262	tCa/tAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29685997	29685997	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	157	452	0	ENST00000358273.4:c.8124T>G	p.Phe2708Leu	p.F2708L	ENST00000358273	NM_001042492.2	2708	ttT/ttG																																																																															
KDR	3791	MSKCC	GRCh37	4	55971046	55971046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	174	554	0	ENST00000263923.4:c.1751A>G	p.Tyr584Cys	p.Y584C	ENST00000263923	NM_002253.2	584	tAc/tGc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964454	70964454	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	373	625	0	ENST00000276594.2:c.1574C>G	p.Ser525Cys	p.S525C	ENST00000276594	NM_024504.3	525	tCt/tGt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964534	70964534	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	347	535	0	ENST00000276594.2:c.1494C>A	p.Phe498Leu	p.F498L	ENST00000276594	NM_024504.3	498	ttC/ttA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	597	953	0	ENST00000269305.4:c.398T>A	p.Met133Lys	p.M133K	ENST00000269305	NM_001126112.2	133	aTg/aAg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32945129	32945129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	46	255	0	ENST00000380152.3:c.8524C>T	p.Arg2842Cys	p.R2842C	ENST00000380152		2842	Cgc/Tgc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266063	41266316	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATA	GGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATA	-			P-0028706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	37	297	0	ENST00000349496.5:c.60_241+72del		p.X20_splice	ENST00000349496	NM_001904.3	20																																																																																
STK11	6794	MSKCC	GRCh37	19	1207203	1207203	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0029599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	494	615	0	ENST00000326873.7:c.290+1G>T		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																																
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0029599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	194	368	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
MGA	23269	MSKCC	GRCh37	15	42057117	42057117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	112	552	0	ENST00000219905.7:c.7778C>T	p.Ser2593Phe	p.S2593F	ENST00000219905	NM_001164273.1	2593	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0008077-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			566	291	701	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243484	46243484	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008077-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			373	190	483	0	ENST00000334344.6:c.1837C>T	p.Gln613Ter	p.Q613*	ENST00000334344	NM_152641.2	613	Cag/Tag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741454	145741454	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008077-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			828	501	1039	2	ENST00000428558.2:c.1049G>T	p.Arg350Met	p.R350M	ENST00000428558	NM_004260.3	350	aGg/aTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29667601	29667601	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008077-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			535	298	769	0	ENST00000358273.4:c.7000G>C	p.Gly2334Arg	p.G2334R	ENST00000358273	NM_001042492.2	2334	Ggt/Cgt																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868166	45868166	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008077-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			814	438	1028	1	ENST00000391945.4:c.524A>G	p.Tyr175Cys	p.Y175C	ENST00000391945	NM_000400.3	175	tAc/tGc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21627866	21627866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008077-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			763	80	862	0	ENST00000421138.2:c.1264G>A	p.Asp422Asn	p.D422N	ENST00000421138		422	Gat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	856	457	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0015210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	295	359	2	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439674	51439674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	164	299	0	ENST00000262662.1:c.239C>T	p.Ala80Val	p.A80V	ENST00000262662		80	gCa/gTa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278091	41278111	+	inframe_deletion	In_Frame_Del	DEL	CTGCTGTTTTGTTCCGAATGT	CTGCTGTTTTGTTCCGAATGT	-			P-0015210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	110	306	0	ENST00000349496.5:c.1970_1990del	p.Ala657_Ser663del	p.A657_S663del	ENST00000349496	NM_001904.3	656	gCTGCTGTTTTGTTCCGAATGTct/gct																																																																															
APC	324	MSKCC	GRCh37	5	112173668	112173668	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	238	290	0	ENST00000257430.4:c.2377C>T	p.Gln793Ter	p.Q793*	ENST00000257430	NM_000038.5	793	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0015323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	232	649	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0015323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	210	643	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175365	112175366	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	145	272	0	ENST00000257430.4:c.4077dup	p.Ser1360IlefsTer15	p.S1360Ifs*15	ENST00000257430	NM_000038.5	1358	-/A																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916926	178916937	+	inframe_deletion	In_Frame_Del	DEL	GTAGGCAACCGT	GTAGGCAACCGT	-			P-0016441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	120	664	0	ENST00000263967.3:c.314_325del	p.Val105_Arg108del	p.V105_R108del	ENST00000263967	NM_006218.2	105	GTAGGCAACCGT/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0016441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	111	420	0	ENST00000269305.4:c.782+1G>C		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
BRCA1	672	MSKCC	GRCh37	17	41246695	41246695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	121	479	0	ENST00000357654.3:c.853C>T	p.His285Tyr	p.H285Y	ENST00000357654	NM_007294.3	285	Cat/Tat																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440695	56440696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	127	678	0	ENST00000407977.2:c.522dup	p.Phe175ValfsTer13	p.F175Vfs*13	ENST00000407977		174	-/G																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581343	48581344	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATT			P-0016441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	95	474	0	ENST00000342988.3:c.649_652dup	p.Pro218HisfsTer18	p.P218Hfs*18	ENST00000342988	NM_005359.5	216	aac/aaCATTc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918712	44918712	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0016441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	106	230	0	ENST00000377967.4:c.1194+1G>C		p.X398_splice	ENST00000377967	NM_021140.2	398																																																																																
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0016809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			132	103	612	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39249810	39249810	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			112	112	371	0	ENST00000402219.2:c.1759A>G	p.Ile587Val	p.I587V	ENST00000402219	NM_005633.3	587	Ata/Gta																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945675	54945675	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			107	67	319	0	ENST00000312783.6:c.895G>C	p.Glu299Gln	p.E299Q	ENST00000312783	NM_198436.1	299	Gaa/Caa																																																																															
ATRX	546	MSKCC	GRCh37	X	76888844	76888844	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			104	75	436	0	ENST00000373344.5:c.4985C>A	p.Pro1662His	p.P1662H	ENST00000373344	NM_000489.3	1662	cCt/cAt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118347553	118347553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	56	349	0	ENST00000534358.1:c.3190C>T	p.Arg1064Ter	p.R1064*	ENST00000534358	NM_005933.3	1064	Cga/Tga																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944842	31944842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1344	164	708	0	ENST00000340398.3:c.259G>A	p.Ala87Thr	p.A87T	ENST00000340398	NM_001013699.2	87	Gca/Aca																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231289	98231289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139705799		P-0017019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	66	424	2	ENST00000331920.6:c.1994G>A	p.Arg665His	p.R665H	ENST00000331920	NM_000264.3	665	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0017063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	333	577	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
TCF3	6929	MSKCC	GRCh37	19	1620991	1620991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	175	661	4	ENST00000344749.5:c.1069G>A	p.Val357Met	p.V357M	ENST00000344749	NM_001136139.2	357	Gtg/Atg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17948009	17948009	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	50	571	0	ENST00000458235.1:c.1715C>G	p.Ala572Gly	p.A572G	ENST00000458235	NM_000215.3	572	gCa/gGa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38953142	38953142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	85	352	0	ENST00000357387.3:c.2842G>A	p.Val948Met	p.V948M	ENST00000357387	NM_152756.3	948	Gtg/Atg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519459	176519459	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	421	618	0	ENST00000292408.4:c.865A>G	p.Ile289Val	p.I289V	ENST00000292408	NM_213647.1	289	Atc/Gtc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	201	401	0				ENST00000310581	NM_198253.2																																																																																	
TCF7L2	6934	MSKCC	GRCh37	10	114920402	114920402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	468	439	1	ENST00000543371.1:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000543371	NM_001198531.1	448	cGg/cAg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030223	180030223	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200835339		P-0017489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	331	621	3	ENST00000261937.6:c.4061G>A	p.Arg1354His	p.R1354H	ENST00000261937	NM_182925.4	1354	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	156	283	0	ENST00000257430.4:c.4063dup	p.Ser1355PhefsTer20	p.S1355Ffs*20	ENST00000257430	NM_000038.5	1353	-/T																																																																															
SESN2	83667	MSKCC	GRCh37	1	28601376	28601376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	147	544	1	ENST00000253063.3:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000253063	NM_031459.4	354	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576862	7576863	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	339	596	0	ENST00000269305.4:c.983dupT	p.Thr329HisfsTer8	p.T329Hfs*8	ENST00000269305	NM_001126112.2	328	ttc/ttTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153259012	153259013	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0017808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	75	373	0	ENST00000281708.4:c.802_803delAT	p.Met268AspfsTer18	p.M268Dfs*18	ENST00000281708	NM_033632.3	268	ATg/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0017808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	360	733	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	196	494	0	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9776541	9776541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	295	710	0	ENST00000377346.4:c.644C>T	p.Ala215Val	p.A215V	ENST00000377346	NM_005026.3	215	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175371	112175372	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	209	256	0	ENST00000257430.4:c.4083dup	p.Ser1362LeufsTer13	p.S1362Lfs*13	ENST00000257430	NM_000038.5	1360	-/C																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0018070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	32	625	3	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11169374	11169374	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	68	966	0	ENST00000361445.4:c.7501A>T	p.Ile2501Phe	p.I2501F	ENST00000361445	NM_004958.3	2501	Att/Ttt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953258	81953258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	45	389	0	ENST00000359376.3:c.2224C>T	p.Arg742Cys	p.R742C	ENST00000359376	NM_002661.3	742	Cgc/Tgc																																																																															
ERG	2078	MSKCC	GRCh37	21	39795356	39795356	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	55	695	0	ENST00000288319.7:c.364G>T	p.Glu122Ter	p.E122*	ENST00000288319	NM_182918.3	122	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112173210	112173308	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTGTGACCTTAATTTTGTGATCTCTTGATTTTATTTCAGGCAAATCCTAAGAGAGAACAACTGTCTACAAACTTTATTACAACACTTAAAATCTCATA	ATTGTGACCTTAATTTTGTGATCTCTTGATTTTATTTCAGGCAAATCCTAAGAGAGAACAACTGTCTACAAACTTTATTACAACACTTAAAATCTCATA	-			P-0018070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	23	177	0	ENST00000257430.4:c.1959-40_2017delATTGTGACCTTAATTTTGTGATCTCTTGATTTTATTTCAGGCAAATCCTAAGAGAGAACAACTGTCTACAAACTTTATTACAACACTTAAAATCTCATA		p.X653_splice	ENST00000257430	NM_000038.5	653																																																																																
CDK6	1021	MSKCC	GRCh37	7	92244481	92244481	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	76	410	0	ENST00000265734.4:c.954G>T	p.Gln318His	p.Q318H	ENST00000265734	NM_001259.6	318	caG/caT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	156	748	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0019267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	106	876	1	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																															
PAK1	5058	MSKCC	GRCh37	11	77047314	77047314	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	96	468	0	ENST00000356341.3:c.1230C>A	p.Phe410Leu	p.F410L	ENST00000356341	NM_002576.4	410	ttC/ttA																																																																															
SLX4	84464	MSKCC	GRCh37	16	3652204	3652204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	92	917	3	ENST00000294008.3:c.865G>A	p.Glu289Lys	p.E289K	ENST00000294008	NM_032444.2	289	Gag/Aag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117878	70117888	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCAGGCGGC	GCGCAGGCGGC	-			P-0019267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	92	479	1	ENST00000245479.2:c.353_363del	p.Ala118GlufsTer130	p.A118Efs*130	ENST00000245479	NM_000346.3	116	GCGCAGGCGGCg/g																																																																															
SDHA	6389	MSKCC	GRCh37	5	225669	225669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	66	865	1	ENST00000264932.6:c.448G>A	p.Val150Met	p.V150M	ENST00000264932	NM_004168.2	150	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	200	784	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0019587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	94	599	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0019587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	15	705	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0019587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	30	845	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115261272	115261273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAGGCGA			P-0019587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	99	831	0	ENST00000438362.2:c.2442_2448dup	p.Met817SerfsTer13	p.M817Sfs*13	ENST00000438362	NM_001242891.1	816	-/TCGCCTA																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115446	115115446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	279	680	0	ENST00000257566.3:c.880del	p.Ile294Ter	p.I294*	ENST00000257566	NM_016569.3	294	Ata/ta																																																																															
FANCA	2175	MSKCC	GRCh37	16	89877386	89877386	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139160837		P-0019587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	103	845	0	ENST00000389301.3:c.377C>T	p.Thr126Met	p.T126M	ENST00000389301	NM_000135.2	126	aCg/aTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221060	5221060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140049694		P-0019587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	111	809	0	ENST00000357368.4:c.3406G>A	p.Gly1136Ser	p.G1136S	ENST00000357368	NM_002850.3	1136	Ggc/Agc																																																																															
CIC	23152	MSKCC	GRCh37	19	42793100	42793100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	146	1018	3	ENST00000575354.2:c.992C>T	p.Pro331Leu	p.P331L	ENST00000575354	NM_015125.3	331	cCg/cTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543845	212543845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	78	621	0	ENST00000342788.4:c.1554C>A	p.Asp518Glu	p.D518E	ENST00000342788	NM_005235.2	518	gaC/gaA																																																																															
APC	324	MSKCC	GRCh37	5	112174374	112174374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	74	483	0	ENST00000257430.4:c.3083G>A	p.Ser1028Asn	p.S1028N	ENST00000257430	NM_000038.5	1028	aGt/aAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0019594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	176	540	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0019594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	450	812	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0019594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	248	528	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0019594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	175	361	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																															
IL7R	3575	MSKCC	GRCh37	5	35860962	35860962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	61	330	0	ENST00000303115.3:c.91G>A	p.Glu31Lys	p.E31K	ENST00000303115	NM_002185.3	31	Gaa/Aaa																																																																															
MET	4233	MSKCC	GRCh37	7	116423497	116423497	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	157	381	0	ENST00000397752.3:c.3772C>T	p.Gln1258Ter	p.Q1258*	ENST00000397752	NM_000245.2	1258	Caa/Taa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0019699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	273	697	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807914	3807914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	200	660	3	ENST00000262367.5:c.3505C>T	p.Arg1169Cys	p.R1169C	ENST00000262367	NM_004380.2	1169	Cgc/Tgc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180045902	180045902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	183	610	0	ENST00000261937.6:c.2869C>T	p.Arg957Cys	p.R957C	ENST00000261937	NM_182925.4	957	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577123	+	missense_variant	Missense_Mutation	ONP	CGCA	CGCA	AGCG			P-0019699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	444	967	2	ENST00000269305.4:c.815_818delinsCGCT	p.Val272_Arg273delinsAlaLeu	p.V272_R273delinsAL	ENST00000269305	NM_001126112.2	272	gTGCGt/gCGCTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0019780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	155	580	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0019780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	159	772	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0019780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	233	613	7	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562282	21562282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	792	1008	1	ENST00000382592.4:c.1637C>T	p.Ala546Val	p.A546V	ENST00000382592	NM_014572.2	546	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0019780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	377	748	0	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																																
SOX2	6657	MSKCC	GRCh37	3	181430363	181430363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	590	760	0	ENST00000325404.1:c.215G>A	p.Ser72Asn	p.S72N	ENST00000325404	NM_003106.3	72	aGc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0020634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	189	900	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63700048	63700048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	42	287	0	ENST00000279873.7:c.383C>T	p.Pro128Leu	p.P128L	ENST00000279873	NM_032199.2	128	cCa/cTa																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885339	111885452	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATAGCCAAGGTATGGGGTGGGGTGGGGTGGGGTGGGGCAGGCAGGACCGTGCCACCCCTCTCCACTGGAGTTCAGGGTCCTAGAGGGACAGCCCGAGCCCACCATCCTCTCCT	GATAGCCAAGGTATGGGGTGGGGTGGGGTGGGGTGGGGCAGGCAGGACCGTGCCACCCCTCTCCACTGGAGTTCAGGGTCCTAGAGGGACAGCCCGAGCCCACCATCCTCTCCT	-			P-0020634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	42	369	0	ENST00000341259.2:c.1227_1237-8del		p.X409_splice	ENST00000341259	NM_005475.2	409																																																																																
TSC2	7249	MSKCC	GRCh37	16	2134980	2134980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1535	94	1243	2	ENST00000219476.3:c.4522C>T	p.Pro1508Ser	p.P1508S	ENST00000219476	NM_000548.3	1508	Ccc/Tcc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900954	3900954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1404	159	1009	0	ENST00000262367.5:c.142G>A	p.Gly48Arg	p.G48R	ENST00000262367	NM_004380.2	48	Gga/Aga																																																																															
SMO	6608	MSKCC	GRCh37	7	128852056	128852056	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1448	110	1214	0	ENST00000249373.3:c.2128C>A	p.Gln710Lys	p.Q710K	ENST00000249373	NM_005631.4	710	Cag/Aag																																																																															
SYK	6850	MSKCC	GRCh37	9	93637029	93637029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	40	464	0	ENST00000375746.1:c.1079C>T	p.Pro360Leu	p.P360L	ENST00000375746	NM_001174167.1	360	cCc/cTc																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20148678	20148678	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1117	63	948	0	ENST00000379607.5:c.385A>C	p.Ile129Leu	p.I129L	ENST00000379607	NM_001412.3	129	Att/Ctt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	230	644	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0020642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	322	838	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767326		P-0020642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	115	306	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624184	89624232	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	GCCATCTCTCTCCTCCTTTTTCTTCAGCCACAGGCTCCCAGACATGACA	GCCATCTCTCTCCTCCTTTTTCTTCAGCCACAGGCTCCCAGACATGACA	-			P-0020642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	80	106	0	ENST00000371953.3:c.-37_12delTCTCTCCTCCTTTTTCTTCAGCCACAGGCTCCCAGACATGACAGCCATC		p.*13fs*	ENST00000371953	NM_000314.4	13																																																																																
NTRK3	4916	MSKCC	GRCh37	15	88472460	88472460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	144	664	0	ENST00000360948.2:c.2095G>A	p.Gly699Ser	p.G699S	ENST00000360948	NM_001012338.2	699	Ggc/Agc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266074	41266266	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTG	ACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTG	-			P-0020642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	99	316	0	ENST00000349496.5:c.71_241+22del		p.X24_splice	ENST00000349496	NM_001904.3	24																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	283	876	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	220	374	1	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1206165503		P-0021325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	456	1180	0	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																															
WT1	7490	MSKCC	GRCh37	11	32456756	32456756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	363	925	4	ENST00000332351.3:c.136G>A	p.Ala46Thr	p.A46T	ENST00000332351	NM_024426.4	46	Gcc/Acc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222886	5222886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	98	917	1	ENST00000357368.4:c.2917G>A	p.Gly973Ser	p.G973S	ENST00000357368	NM_002850.3	973	Ggt/Agt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640512	3640512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	372	980	0	ENST00000294008.3:c.3127G>A	p.Gly1043Arg	p.G1043R	ENST00000294008	NM_032444.2	1043	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579576	7579640	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGACGGCAAGGGGGACTGTAGATGGGTGAAAAGAGCAGTCAGAGGACCAGGTCCTCAGCCCCCCA	GGACGGCAAGGGGGACTGTAGATGGGTGAAAAGAGCAGTCAGAGGACCAGGTCCTCAGCCCCCCA	-			P-0021325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	218	870	0	ENST00000269305.4:c.97-50_111del		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48584781	48584782	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATCTTCA			P-0021325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	212	727	0	ENST00000342988.3:c.860_866dup	p.His290SerfsTer20	p.H290Sfs*20	ENST00000342988	NM_005359.5	287	cat/cATCTTCAat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0021397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	336	836	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0021397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	74	398	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0021397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	53	462	1	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588981	67588981	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	23	500	1	ENST00000274335.5:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000274335		358	Cga/Tga																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726267	46726267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	110	645	0	ENST00000371975.4:c.461G>A	p.Arg154Gln	p.R154Q	ENST00000371975	NM_003579.3	154	cGg/cAg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56414940	56414940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	116	680	1	ENST00000348428.3:c.2341C>T	p.Arg781Trp	p.R781W	ENST00000348428	NM_006785.3	781	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0021843-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			787	190	696	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221782	55221786	+	missense_variant	Missense_Mutation	ONP	CAGAT	CAGAT	AGAGA			P-0021843-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			838	164	616	3	ENST00000275493.2:c.826_830delinsAGAGA	p.Gln276_Met277delinsArgGlu	p.Q276_M277delinsRE	ENST00000275493	NM_005228.3	276	CAGATg/AGAGAg																																																																															
ATM	472	MSKCC	GRCh37	11	108143298	108143310	+	frameshift_variant	Frame_Shift_Del	DEL	AATGGCCCTAGTA	AATGGCCCTAGTA	-			P-0021843-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			589	103	462	0	ENST00000278616.4:c.3120_3132del	p.Met1040IlefsTer20	p.M1040Ifs*20	ENST00000278616	NM_000051.3	1039	agAATGGCCCTAGTA/ag																																																																															
MGA	23269	MSKCC	GRCh37	15	41988916	41988916	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0021843-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			534	118	436	1	ENST00000219905.7:c.1708A>T	p.Lys570Ter	p.K570*	ENST00000219905	NM_001164273.1	570	Aag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0022329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	163	640	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577525	7577527	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0022329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	130	790	0	ENST00000269305.4:c.754_756del	p.Leu252del	p.L252del	ENST00000269305	NM_001126112.2	252	CTC/-																																																																															
BCOR	54880	MSKCC	GRCh37	X	39914723	39914723	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	89	325	1	ENST00000378444.4:c.4639C>T	p.Arg1547Ter	p.R1547*	ENST00000378444	NM_001123385.1	1547	Cga/Tga																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944172	71944172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	78	724	1	ENST00000298229.2:c.2005G>A	p.Asp669Asn	p.D669N	ENST00000298229	NM_001567.3	669	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578270	7578270	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	13	739	0	ENST00000269305.4:c.579T>G	p.His193Gln	p.H193Q	ENST00000269305	NM_001126112.2	193	caT/caG																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24167448	24167448	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	34	889	0	ENST00000263121.7:c.832C>T	p.Gln278Ter	p.Q278*	ENST00000263121	NM_003073.3	278	Cag/Tag																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430210	181430226	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCGGCAACTCCACC	GCGGCGGCAACTCCACC	-			P-0022329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	33	417	0	ENST00000325404.1:c.70_86del	p.Asn24GlyfsTer66	p.N24Gfs*66	ENST00000325404	NM_003106.3	21	gGCGGCGGCAACTCCACC/g																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509763	106509763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	54	583	0	ENST00000359195.3:c.1757C>T	p.Pro586Leu	p.P586L	ENST00000359195	NM_002649.2	586	cCa/cTa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139407844	139407844	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	66	626	1	ENST00000277541.6:c.2353G>A	p.Gly785Ser	p.G785S	ENST00000277541	NM_017617.3	785	Ggt/Agt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0022555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	233	811	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0022555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	91	632	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0022555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	164	753	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0022555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	68	481	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735467	40735467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	188	1030	1	ENST00000373198.4:c.3406C>T	p.Arg1136Cys	p.R1136C	ENST00000373198	NM_133170.3	1136	Cgt/Tgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133257751	133257751	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	176	935	1	ENST00000320574.5:c.177G>T	p.Lys59Asn	p.K59N	ENST00000320574	NM_006231.2	59	aaG/aaT																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437908	110437908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	11	36	0	ENST00000375856.3:c.493G>A	p.Ala165Thr	p.A165T	ENST00000375856	NM_003749.2	165	Gcc/Acc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632618	3632618	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	96	1203	1	ENST00000294008.3:c.5230C>T	p.Gln1744Ter	p.Q1744*	ENST00000294008	NM_032444.2	1744	Cag/Tag																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646641	23646641	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	35	702	0	ENST00000261584.4:c.1226A>C	p.Tyr409Ser	p.Y409S	ENST00000261584	NM_024675.3	409	tAt/tCt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538254	9538254	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0022555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	130	868	2	ENST00000353224.5:c.1743+1del		p.X581_splice	ENST00000353224	NM_177990.2	581																																																																																
APC	324	MSKCC	GRCh37	5	112175944	112175945	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0022555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	77	322	0	ENST00000257430.4:c.4655_4656del	p.Glu1552GlyfsTer6	p.E1552Gfs*6	ENST00000257430	NM_000038.5	1551	aaAGag/aaag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	177	763	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0022614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	74	438	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591925	48591925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	61	585	0	ENST00000342988.3:c.1088G>T	p.Cys363Phe	p.C363F	ENST00000342988	NM_005359.5	363	tGt/tTt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879903	37879903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	372	1090	2	ENST00000269571.5:c.2198C>T	p.Thr733Ile	p.T733I	ENST00000269571		733	aCa/aTa																																																																															
PARK2	5071	MSKCC	GRCh37	6	161807855	161807855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	124	752	4	ENST00000366898.1:c.1138G>A	p.Val380Ile	p.V380I	ENST00000366898	NM_004562.2	380	Gta/Ata																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39644726	39644726	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	54	453	0	ENST00000262039.4:c.2455T>G	p.Leu819Val	p.L819V	ENST00000262039	NM_002647.2	819	Ttg/Gtg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39347488	39347488	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1226	139	864	0	ENST00000402219.2:c.76G>T	p.Ala26Ser	p.A26S	ENST00000402219	NM_005633.3	26	Gcg/Tcg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278082	41278082	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	104	420	0	ENST00000349496.5:c.1958C>A	p.Thr653Lys	p.T653K	ENST00000349496	NM_001904.3	653	aCa/aAa																																																																															
MITF	4286	MSKCC	GRCh37	3	69928358	69928358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	200	527	0	ENST00000352241.4:c.178C>T	p.Arg60Cys	p.R60C	ENST00000352241	NM_198159.2	60	Cgc/Tgc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467644	66467644	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	74	576	4	ENST00000273854.3:c.625G>C	p.Gly209Arg	p.G209R	ENST00000273854	NM_004439.5	209	Gga/Cga																																																																															
APC	324	MSKCC	GRCh37	5	112151191	112151191	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0022614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	76	488	0	ENST00000257430.4:c.836del		p.X279_splice	ENST00000257430	NM_000038.5	279																																																																																
AMER1	139285	MSKCC	GRCh37	X	63412634	63412634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	561	864	7	ENST00000330258.3:c.533G>A	p.Arg178His	p.R178H	ENST00000330258	NM_152424.3	178	cGt/cAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	96	652	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
RB1	5925	MSKCC	GRCh37	13	49030479	49030479	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	88	480	0	ENST00000267163.4:c.1959delA	p.Val654CysfsTer4	p.V654Cfs*4	ENST00000267163	NM_000321.2	652	Aaa/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs387906846		P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	62	443	0	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272337	15272337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs776990686		P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	98	740	5	ENST00000263388.2:c.6102del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2034	ccC/cc																																																																															
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	61	398	1	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630605	187630605	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	104	710	0	ENST00000441802.2:c.377del	p.Asn126IlefsTer20	p.N126Ifs*20	ENST00000441802	NM_005245.3	126	aAt/at																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355347	15355347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	76	468	0	ENST00000263377.2:c.2276C>T	p.Pro759Leu	p.P759L	ENST00000263377	NM_058243.2	759	cCg/cTg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216419	7216419	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	93	701	0	ENST00000380728.2:c.829del	p.Gln277ArgfsTer68	p.Q277Rfs*68	ENST00000380728		277	Cag/ag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900138	151900138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	93	419	0	ENST00000262189.6:c.3973C>T	p.Gln1325Ter	p.Q1325*	ENST00000262189	NM_170606.2	1325	Cag/Tag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210893	36210893	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	95	660	2	ENST00000222270.7:c.649del	p.Arg217GlyfsTer22	p.R217Gfs*22	ENST00000222270	NM_014727.1	215	aCc/ac																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258607	16258607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	69	557	1	ENST00000375759.3:c.5872C>T	p.Arg1958Trp	p.R1958W	ENST00000375759	NM_015001.2	1958	Cgg/Tgg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946376	71946376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	113	752	0	ENST00000298229.2:c.2540G>A	p.Ser847Asn	p.S847N	ENST00000298229	NM_001567.3	847	aGc/aAc																																																																															
ATM	472	MSKCC	GRCh37	11	108172415	108172415	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	117	616	0	ENST00000278616.4:c.5218A>G	p.Ile1740Val	p.I1740V	ENST00000278616	NM_000051.3	1740	Att/Gtt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344392	118344393	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	46	367	0	ENST00000534358.1:c.2522dup	p.Gly842ArgfsTer5	p.G842Rfs*5	ENST00000534358	NM_005933.3	840	acc/aCcc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492628	56492628	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	97	593	1	ENST00000267101.3:c.2782del	p.Glu928SerfsTer16	p.E928Sfs*16	ENST00000267101	NM_001982.3	926	aaG/aa																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2097749	2097749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	67	570	1	ENST00000219066.1:c.100G>A	p.Glu34Lys	p.E34K	ENST00000219066	NM_002528.5	34	Gag/Aag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351149	89351149	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs772229371		P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	38	602	0	ENST00000301030.4:c.1801C>T	p.Arg601Ter	p.R601*	ENST00000301030	NM_001256183.1	601	Cga/Tga																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246806	41246806	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	91	613	0	ENST00000357654.3:c.742A>G	p.Thr248Ala	p.T248A	ENST00000357654	NM_007294.3	248	Acc/Gcc																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66526547	66526547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	74	478	1	ENST00000358598.2:c.1103G>A	p.Arg368Gln	p.R368Q	ENST00000358598	NM_212471.2	368	cGa/cAa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56401610	56401610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	109	562	0	ENST00000348428.3:c.1472C>T	p.Ala491Val	p.A491V	ENST00000348428	NM_006785.3	491	gCc/gTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748595	40748595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	78	507	0	ENST00000373198.4:c.2921G>A	p.Arg974Gln	p.R974Q	ENST00000373198	NM_133170.3	974	cGg/cAg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936113	49936113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	82	557	0	ENST00000296474.3:c.1557G>T	p.Gln519His	p.Q519H	ENST00000296474	NM_002447.2	519	caG/caT																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52613086	52613086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	65	452	1	ENST00000394830.3:c.3442C>T	p.Arg1148Cys	p.R1148C	ENST00000394830	NM_018313.4	1148	Cgt/Tgt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803443	1803443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	104	819	0	ENST00000260795.2:c.712C>T	p.Arg238Trp	p.R238W	ENST00000260795		238	Cgg/Tgg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133821	55133821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	66	519	0	ENST00000257290.5:c.1034C>T	p.Pro345Leu	p.P345L	ENST00000257290	NM_006206.4	345	cCc/cTc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638352	176638353	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	97	682	0	ENST00000439151.2:c.2954_2955del	p.Ser985CysfsTer25	p.S985Cfs*25	ENST00000439151	NM_022455.4	984	gaCTct/gact																																																																															
RXRA	6256	MSKCC	GRCh37	9	137320974	137320974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	78	768	1	ENST00000481739.1:c.931G>A	p.Ala311Thr	p.A311T	ENST00000481739	NM_002957.4	311	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0024204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	186	838	4	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0024204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	55	390	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0024204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	126	801	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198265579	198265579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	157	792	2	ENST00000335508.6:c.2578G>A	p.Glu860Lys	p.E860K	ENST00000335508	NM_012433.2	860	Gaa/Aaa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354055	15354055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	103	638	0	ENST00000263377.2:c.2825C>T	p.Thr942Met	p.T942M	ENST00000263377	NM_058243.2	942	aCg/aTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900395	32900395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	51	579	0	ENST00000380152.3:c.492G>C	p.Leu164Phe	p.L164F	ENST00000380152		164	ttG/ttC																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120135	70120136	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	48	258	0	ENST00000245479.2:c.1138dup	p.His380ProfsTer198	p.H380Pfs*198	ENST00000245479	NM_000346.3	379	-/C																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266074	41266112	+	inframe_deletion	In_Frame_Del	DEL	ACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATT	ACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATT	-			P-0024204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	94	390	0	ENST00000349496.5:c.71_109del	p.His24_Ser37delinsPro	p.H24_S37delinsP	ENST00000349496	NM_001904.3	24	cACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTct/cct																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138277	2138277	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TCT			P-0024204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	175	978	0	ENST00000219476.3:c.5210delinsTCT	p.Pro1737LeufsTer90	p.P1737Lfs*90	ENST00000219476	NM_000548.3	1737	cCc/cTCTc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562477	21562477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	18	235	1	ENST00000382592.4:c.1442C>T	p.Ala481Val	p.A481V	ENST00000382592	NM_014572.2	481	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0024575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	140	737	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48604778	48604778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767383		P-0024575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	44	683	0	ENST00000342988.3:c.1600C>T	p.Gln534Ter	p.Q534*	ENST00000342988	NM_005359.5	534	Cag/Tag																																																																															
ATR	545	MSKCC	GRCh37	3	142281516	142281516	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	65	946	0	ENST00000350721.4:c.728A>T	p.Lys243Ile	p.K243I	ENST00000350721	NM_001184.3	243	aAa/aTa																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	65	608	1	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175516	112175516	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	69	597	0	ENST00000257430.4:c.4225C>G	p.Pro1409Ala	p.P1409A	ENST00000257430	NM_000038.5	1409	Cca/Gca																																																																															
STK19	8859	MSKCC	GRCh37	6	31940177	31940177	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0024575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	76	1130	1	ENST00000375331.2:c.319A>T	p.Lys107Ter	p.K107*	ENST00000375331	NM_004197.1	107	Aaa/Taa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32183098	32183098	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	84	1231	0	ENST00000375023.3:c.1926C>G	p.Asp642Glu	p.D642E	ENST00000375023	NM_004557.3	642	gaC/gaG																																																																															
SMO	6608	MSKCC	GRCh37	7	128850951	128850951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	75	753	1	ENST00000249373.3:c.1798G>A	p.Val600Met	p.V600M	ENST00000249373	NM_005631.4	600	Gtg/Atg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68930087	68930087	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	25	671	0	ENST00000288368.4:c.148T>G	p.Leu50Val	p.L50V	ENST00000288368	NM_024870.2	50	Tta/Gta																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390649	139390650	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0025186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	81	529	0	ENST00000277541.6:c.7541_7542delCT	p.Pro2514ArgfsTer4	p.P2514Rfs*4	ENST00000277541	NM_017617.3	2514	cCT/c																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261740	16261740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	35	365	0	ENST00000375759.3:c.9005C>T	p.Pro3002Leu	p.P3002L	ENST00000375759	NM_015001.2	3002	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574013	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	77	457	0	ENST00000269305.4:c.1014_1015insT	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	338	-/T																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157470038	157470048	+	stop_gained	Nonsense_Mutation	ONP	GGCAGCCGCAG	GGCAGCCGCAG	ACCGTAAGGCA			P-0025186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	32	284	1	ENST00000346085.5:c.2832_2842delinsACCGTAAGGCA	p.Ala945_Ala948delinsProTerGlyThr	p.A945_A948delinsP*GT	ENST00000346085	NM_020732.3	944	gaGGCAGCCGCAGca/gaACCGTAAGGCAca																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44950073	44950073	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	60	391	1	ENST00000377967.4:c.3842T>A	p.Ile1281Asn	p.I1281N	ENST00000377967	NM_021140.2	1281	aTc/aAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	232	431	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489545	40489546	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0025909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	403	558	1	ENST00000264657.5:c.704_705del	p.Leu235HisfsTer7	p.L235Hfs*7	ENST00000264657	NM_139276.2	235	cTC/c																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602788	10602788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	576	783	0	ENST00000171111.5:c.790G>T	p.Val264Phe	p.V264F	ENST00000171111	NM_203500.1	264	Gtc/Ttc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0029112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	343	726	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0029112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	89	821	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241654	55241654	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	347	857	0	ENST00000275493.2:c.2102A>T	p.Gln701Leu	p.Q701L	ENST00000275493	NM_005228.3	701	cAa/cTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	179	569	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087503	27087503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	48	564	4	ENST00000324856.7:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000324856	NM_006015.4	693	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11217330	11217330	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	133	560	0	ENST00000361445.4:c.4348T>G	p.Tyr1450Asp	p.Y1450D	ENST00000361445	NM_004958.3	1450	Tat/Gat																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910883	114910883	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0030293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	185	484	1	ENST00000543371.1:c.1001+1G>A		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602404	10602404	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1432914621		P-0030293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	224	684	0	ENST00000171111.5:c.1174G>A	p.Ala392Thr	p.A392T	ENST00000171111	NM_203500.1	392	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112174265	112174275	+	frameshift_variant	Frame_Shift_Del	DEL	AGTAAGTTTTG	AGTAAGTTTTG	-			P-0030293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	149	485	0	ENST00000257430.4:c.2974_2984del	p.Ser992GlnfsTer12	p.S992Qfs*12	ENST00000257430	NM_000038.5	992	AGTAAGTTTTGc/c																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0031083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	28	334	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	36	514	0	ENST00000269305.4:c.532delC	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509060	106509060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	25	433	0	ENST00000359195.3:c.1054G>A	p.Val352Met	p.V352M	ENST00000359195	NM_002649.2	352	Gtg/Atg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661671	227661671	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369611716		P-0031083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	23	402	0	ENST00000305123.5:c.1784G>A	p.Arg595Gln	p.R595Q	ENST00000305123	NM_005544.2	595	cGg/cAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440764	56440764	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	26	346	0	ENST00000407977.2:c.454C>T	p.Gln152Ter	p.Q152*	ENST00000407977		152	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591855	48591855	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	28	326	0	ENST00000342988.3:c.1018A>T	p.Lys340Ter	p.K340*	ENST00000342988	NM_005359.5	340	Aag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974691	21974691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	23	309	0	ENST00000304494.5:c.136C>T	p.Arg46Trp	p.R46W	ENST00000304494	NM_000077.4	46	Cgg/Tgg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426151	47426151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	31	581	0	ENST00000377045.4:c.671C>T	p.Thr224Met	p.T224M	ENST00000377045	NM_001654.4	224	aCg/aTg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115263213	115263213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	121	496	1	ENST00000438362.2:c.2137G>A	p.Ala713Thr	p.A713T	ENST00000438362	NM_001242891.1	713	Gct/Act																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176153806	176153806	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	50	312	0	ENST00000367669.3:c.430G>C	p.Glu144Gln	p.E144Q	ENST00000367669	NM_022457.5	144	Gaa/Caa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193099299	193099354	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTAGACTGAAAATATTCCTGTGGTTAGAAGACCTGATCGAAAAGATCTACTTGGA	TTTAGACTGAAAATATTCCTGTGGTTAGAAGACCTGATCGAAAAGATCTACTTGGA	GGAAATACAAATTCTCTTCCCTCTAATCAT			P-0031621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	35	416	2	ENST00000367435.3:c.238-5_288delinsGGAAATACAAATTCTCTTCCCTCTAATCAT		p.X80_splice	ENST00000367435	NM_024529.4	80																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114711241	114711241	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0031621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	34	243	0	ENST00000543371.1:c.257-1G>C		p.X86_splice	ENST00000543371	NM_001198531.1	86																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118343868	118343868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	67	422	1	ENST00000534358.1:c.1994C>T	p.Ser665Phe	p.S665F	ENST00000534358	NM_005933.3	665	tCt/tTt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712767	43712767	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	88	590	0	ENST00000382044.4:c.4417C>T	p.Gln1473Ter	p.Q1473*	ENST00000382044	NM_001141980.1	1473	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0031621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	215	427	1	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266745	18266745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	68	404	0	ENST00000222254.8:c.56G>A	p.Arg19Gln	p.R19Q	ENST00000222254	NM_005027.3	19	cGg/cAg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19258560	19258560	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372543417		P-0031621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	76	557	2	ENST00000162023.5:c.340C>T	p.Arg114Trp	p.R114W	ENST00000162023		114	Cgg/Tgg																																																																															
NF2	4771	MSKCC	GRCh37	22	30035106	30035106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	45	384	2	ENST00000338641.4:c.268G>A	p.Glu90Lys	p.E90K	ENST00000338641	NM_000268.3	90	Gaa/Aaa																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665360	138665360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	66	500	0	ENST00000330315.3:c.205G>A	p.Glu69Lys	p.E69K	ENST00000330315	NM_023067.3	69	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0031621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	129	359	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540874	187540874	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs562612394		P-0031621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	51	351	2	ENST00000441802.2:c.6866C>T	p.Ala2289Val	p.A2289V	ENST00000441802	NM_005245.3	2289	gCg/gTg																																																																															
FYN	2534	MSKCC	GRCh37	6	112041083	112041083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	48	366	2	ENST00000368678.4:c.172G>A	p.Gly58Ser	p.G58S	ENST00000368678		58	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	78	357	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0032013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	19	291	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0032013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	82	457	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0032013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	288	593	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
DOT1L	84444	MSKCC	GRCh37	19	2193766	2193766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	69	526	1	ENST00000398665.3:c.572C>T	p.Pro191Leu	p.P191L	ENST00000398665	NM_032482.2	191	cCg/cTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919312	178919313	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0032013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	18	218	0	ENST00000263967.3:c.799_800del	p.Leu267GlufsTer4	p.L267Efs*4	ENST00000263967	NM_006218.2	266	cCT/c																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	158	437	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	422	664	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	98	384	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223251	5223251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	184	615	0	ENST00000357368.4:c.2552G>A	p.Arg851His	p.R851H	ENST00000357368	NM_002850.3	851	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	70	330	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																															
APC	324	MSKCC	GRCh37	5	112173607	112173607	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	86	324	13	ENST00000257430.4:c.2319del	p.Phe773LeufsTer4	p.F773Lfs*4	ENST00000257430	NM_000038.5	772	acT/ac																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457304	67457304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	272	590	1	ENST00000327367.4:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000327367	NM_005902.3	93	cGa/cAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106869	27106871	+	frameshift_variant	Frame_Shift_Del	DEL	CCC	CCC	AG			P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	164	486	2	ENST00000324856.7:c.6480_6482delinsAG	p.Asn2160LysfsTer40	p.N2160Kfs*40	ENST00000324856	NM_006015.4	2160	aaCCCg/aaAGg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983018	201983019	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	204	742	0	ENST00000359651.3:c.869_870dupAG	p.Gly291ArgfsTer4	p.G291Rfs*4	ENST00000359651		289	-/GA																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870825	12870825	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	13	133	0	ENST00000228872.4:c.52G>T	p.Ala18Ser	p.A18S	ENST00000228872	NM_004064.3	18	Gcc/Tcc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119806	70119806	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	346	560	0	ENST00000245479.2:c.809del	p.Phe270SerfsTer9	p.F270Sfs*9	ENST00000245479	NM_000346.3	270	Ttc/tc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368200	45368200	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	91	363	0	ENST00000262160.6:c.1402T>C	p.Ter468GlnextTer8	p.*468Qext*8	ENST00000262160	NM_005901.5	468	Taa/Caa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249382	153249382	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	143	510	0	ENST00000281708.4:c.1396T>C	p.Cys466Arg	p.C466R	ENST00000281708	NM_033632.3	466	Tgt/Cgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0032126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	58	663	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MGA	23269	MSKCC	GRCh37	15	42000307	42000307	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	38	515	0	ENST00000219905.7:c.2326G>T	p.Gly776Ter	p.G776*	ENST00000219905	NM_001164273.1	776	Gga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1220673	1220673	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	61	876	0	ENST00000326873.7:c.692del	p.Phe231SerfsTer56	p.F231Sfs*56	ENST00000326873	NM_000455.4	231	Ttc/tc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11114073	11114073	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0032126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	62	584	0	ENST00000344626.4:c.2001+1del		p.E667fs	ENST00000344626	NM_003072.3	667	gaG/ga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52623152	52623152	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	67	726	1	ENST00000394830.3:c.2899G>T	p.Glu967Ter	p.E967*	ENST00000394830	NM_018313.4	967	Gaa/Taa																																																																															
TERT	7015	MSKCC	GRCh37	5	1280394	1280394	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	67	784	0	ENST00000310581.5:c.1829G>T	p.Arg610Leu	p.R610L	ENST00000310581	NM_198253.2	610	cGg/cTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55211050	55211050	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	51	680	0	ENST00000275493.2:c.293G>T	p.Arg98Leu	p.R98L	ENST00000275493	NM_005228.3	98	cGa/cTa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041045	47041046	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0032126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	57	799	2	ENST00000329236.7:c.1341_1341+1delinsTT		p.X447_splice	ENST00000329236	NM_001204466.1	447																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0032391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	25	352	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0032391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	90	538	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497347	149497347	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140261309		P-0032391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	69	580	1	ENST00000261799.4:c.2971C>T	p.Arg991Cys	p.R991C	ENST00000261799	NM_002609.3	991	Cgc/Tgc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920402	114920402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	80	552	0	ENST00000543371.1:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000543371	NM_001198531.1	448	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175608	112175608	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	34	353	0	ENST00000257430.4:c.4317del	p.Pro1440HisfsTer33	p.P1440Hfs*33	ENST00000257430	NM_000038.5	1439	ccT/cc																																																																															
APC	324	MSKCC	GRCh37	5	112173560	112173560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	40	349	0	ENST00000257430.4:c.2269C>T	p.Gln757Ter	p.Q757*	ENST00000257430	NM_000038.5	757	Caa/Taa																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88676898	88676900	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0032391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	73	634	0	ENST00000372037.3:c.683_685del	p.Arg228_Thr229delinsPro	p.R228_T229delinsP	ENST00000372037	NM_004329.2	228	cGAAct/cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578514	7578550	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGG	TTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGG	-			P-0032391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	42	928	0	ENST00000269305.4:c.380_416del	p.Ser127Ter	p.S127*	ENST00000269305	NM_001126112.2	127	tCCCCTGCCCTCAACAAGATGTTTTGCCAACTGGCCAAg/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0032447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	346	740	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959063	2959063	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41497250		P-0032447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	59	658	0	ENST00000396946.4:c.2453G>A	p.Arg818Gln	p.R818Q	ENST00000396946	NM_032415.4	818	cGg/cAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821640	72821640	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			15	91	65	0	ENST00000268489.5:c.10535G>T	p.Gly3512Val	p.G3512V	ENST00000268489	NM_006885.3	3512	gGc/gTc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11024616	11024616	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	251	513	0	ENST00000327064.4:c.733G>C	p.Val245Leu	p.V245L	ENST00000327064	NM_199141.1	245	Gtg/Ctg																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182665399	182665399	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	195	297	0	ENST00000292782.4:c.542A>G	p.Tyr181Cys	p.Y181C	ENST00000292782	NM_020640.2	181	tAc/tGc																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045710	26045710	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	157	277	0	ENST00000540144.1:c.72A>T	p.Lys24Asn	p.K24N	ENST00000540144	NM_003531.2	24	aaA/aaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0032530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	338	479	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0032530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	256	381	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268084	153268084	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0032530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	134	266	0	ENST00000281708.4:c.724C>T	p.Gln242Ter	p.Q242*	ENST00000281708	NM_033632.3	242	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175531	112175532	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	99	303	0	ENST00000257430.4:c.4241dup	p.Ser1415LysfsTer8	p.S1415Kfs*8	ENST00000257430	NM_000038.5	1414	gta/gTta																																																																															
APC	324	MSKCC	GRCh37	5	112174405	112174406	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	81	280	0	ENST00000257430.4:c.3116dup	p.Arg1040LysfsTer8	p.R1040Kfs*8	ENST00000257430	NM_000038.5	1038	-/G																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740243	162740243	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	275	375	0	ENST00000367921.3:c.1445A>G	p.Gln482Arg	p.Q482R	ENST00000367921	NM_006182.2	482	cAg/cGg																																																																															
ATM	472	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	168	494	0	ENST00000278616.4:c.9022C>G	p.Arg3008Gly	p.R3008G	ENST00000278616	NM_000051.3	3008	Cgt/Ggt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562213	21562213	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	242	612	2	ENST00000382592.4:c.1706A>T	p.Asp569Val	p.D569V	ENST00000382592	NM_014572.2	569	gAt/gTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48955557	48955567	+	frameshift_variant	Frame_Shift_Del	DEL	TGGAATCCCTT	TGGAATCCCTT	-			P-0032530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	58	361	0	ENST00000267163.4:c.1673_1683del	p.Met558SerfsTer10	p.M558Sfs*10	ENST00000267163	NM_000321.2	558	aTGGAATCCCTT/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0032538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	437	560	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584560	48584560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	273	523	0	ENST00000342988.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000342988	NM_005359.5	245	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175175	112175175	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	113	276	0	ENST00000257430.4:c.3885del	p.Ala1296GlnfsTer9	p.A1296Qfs*9	ENST00000257430	NM_000038.5	1295	gAa/ga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0032538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	192	353	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120502	70120503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	369	639	0	ENST00000245479.2:c.1505dup	p.Tyr503LeufsTer75	p.Y503Lfs*75	ENST00000245479	NM_000346.3	502	gtc/gTtc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25978935	25978935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	55	432	0	ENST00000435504.4:c.988G>A	p.Glu330Lys	p.E330K	ENST00000435504		330	Gaa/Aaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111494	8111495	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTGGAGG			P-0032553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	88	414	0	ENST00000346208.3:c.981_987dupCTGGAGG	p.Arg330LeufsTer24	p.R330Lfs*24	ENST00000346208		327	ctc/ctCTGGAGGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057945	27057958	+	frameshift_variant	Frame_Shift_Del	DEL	CTCACAGCCACAGG	CTCACAGCCACAGG	-			P-0032553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	123	475	0	ENST00000324856.7:c.1657_1670del	p.Gln553ValfsTer65	p.Q553Vfs*65	ENST00000324856	NM_006015.4	551	taCTCACAGCCACAGGct/tact																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032567	12032567	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	186	390	0	ENST00000353533.5:c.1003G>T	p.Glu335Ter	p.E335*	ENST00000353533	NM_003010.3	335	Gaa/Taa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004980	150004980	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	69	478	0	ENST00000253339.5:c.1245del	p.Asn415LysfsTer46	p.N415Kfs*46	ENST00000253339		415	aaT/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	121	558	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	49	535	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457303	67457303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	136	615	1	ENST00000327367.4:c.277C>T	p.Arg93Ter	p.R93*	ENST00000327367	NM_005902.3	93	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7576865	7576865	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	121	714	0	ENST00000269305.4:c.981T>G	p.Tyr327Ter	p.Y327*	ENST00000269305	NM_001126112.2	327	taT/taG																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	100	485	2	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175907	112175907	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	38	266	0	ENST00000257430.4:c.4616C>G	p.Ser1539Ter	p.S1539*	ENST00000257430	NM_000038.5	1539	tCa/tGa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711033	114711033	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	33	149	0	ENST00000543371.1:c.256+1G>C		p.X86_splice	ENST00000543371	NM_001198531.1	86																																																																																
PARP1	142	MSKCC	GRCh37	1	226576454	226576454	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	100	463	0	ENST00000366794.5:c.620A>C	p.Lys207Thr	p.K207T	ENST00000366794	NM_001618.3	207	aAg/aCg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679823	88679823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	83	450	1	ENST00000360948.2:c.640G>A	p.Val214Met	p.V214M	ENST00000360948	NM_001012338.2	214	Gtg/Atg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3860747	3860747	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	70	434	0	ENST00000262367.5:c.832C>T	p.Gln278Ter	p.Q278*	ENST00000262367	NM_004380.2	278	Cag/Tag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67663437	67663437	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	23	212	0	ENST00000264010.4:c.1837+1G>T		p.X613_splice	ENST00000264010	NM_006565.3	613																																																																																
KDR	3791	MSKCC	GRCh37	4	55981449	55981449	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	59	407	0	ENST00000263923.4:c.488C>A	p.Ala163Glu	p.A163E	ENST00000263923	NM_002253.2	163	gCa/gAa																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345769	152345769	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	58	346	0	ENST00000359321.1:c.801A>C	p.Lys267Asn	p.K267N	ENST00000359321	NM_005431.1	267	aaA/aaC																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874286	155874286	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	338	525	0	ENST00000368323.3:c.245T>G	p.Phe82Cys	p.F82C	ENST00000368323	NM_006912.5	82	tTt/tGt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376106	225376106	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	138	694	0	ENST00000264414.4:c.848G>T	p.Gly283Val	p.G283V	ENST00000264414	NM_003590.4	283	gGg/gTg																																																																															
RET	5979	MSKCC	GRCh37	10	43597987	43597987	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	117	831	0	ENST00000355710.3:c.535A>T	p.Asn179Tyr	p.N179Y	ENST00000355710	NM_020975.4	179	Aac/Tac																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38591669	38591669	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	124	644	1	ENST00000299084.4:c.128C>G	p.Thr43Ser	p.T43S	ENST00000299084	NM_152594.2	43	aCt/aGt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602613	10602613	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	122	638	0	ENST00000171111.5:c.965C>G	p.Pro322Arg	p.P322R	ENST00000171111	NM_203500.1	322	cCc/cGc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221250	1221250	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	GT			P-0033020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	153	744	0	ENST00000326873.7:c.773delinsGT	p.Asp258GlyfsTer8	p.D258Gfs*8	ENST00000326873	NM_000455.4	258	gAc/gGTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599988	10599988	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	223	653	0	ENST00000171111.5:c.1588C>T	p.Gln530Ter	p.Q530*	ENST00000171111	NM_203500.1	530	Cag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121151	11121152	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	185	642	0	ENST00000344626.4:c.2223_2224del	p.Arg741SerfsTer82	p.R741Sfs*82	ENST00000344626	NM_003072.3	740	GAg/g																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023736	27023736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	90	309	0	ENST00000324856.7:c.842C>T	p.Ala281Val	p.A281V	ENST00000324856	NM_006015.4	281	gCg/gTg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72058550	72058550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	151	467	0	ENST00000357731.5:c.890G>T	p.Cys297Phe	p.C297F	ENST00000357731	NM_173808.2	297	tGt/tTt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984386	201984390	+	frameshift_variant	Frame_Shift_Del	DEL	GTCTA	GTCTA	-			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	150	519	0	ENST00000359651.3:c.1051_1055del	p.Val351GlnfsTer118	p.V351Qfs*118	ENST00000359651		351	GTCTAc/c																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446810	49446810	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	147	459	0	ENST00000301067.7:c.1000A>T	p.Asn334Tyr	p.N334Y	ENST00000301067	NM_003482.3	334	Aat/Tat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913248	32913248	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	153	472	0	ENST00000380152.3:c.4756A>G	p.Thr1586Ala	p.T1586A	ENST00000380152		1586	Aca/Gca																																																																															
STK11	6794	MSKCC	GRCh37	19	1220450	1220461	+	inframe_deletion	In_Frame_Del	DEL	CCTGCTGCTCAC	CCTGCTGCTCAC	-			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	150	746	0	ENST00000326873.7:c.544_555del	p.Leu182_Thr185del	p.L182_T185del	ENST00000326873	NM_000455.4	181	aaCCTGCTGCTCACc/aac																																																																															
STK11	6794	MSKCC	GRCh37	19	1220451	1220466	+	protein_altering_variant	In_Frame_Del	DEL	CTGCTGCTCACCACCG	CTGCTGCTCACCACCG	ACCC			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	150	743	5	ENST00000326873.7:c.544_559delinsACCC	p.Leu182_Gly187delinsThrArg	p.L182_G187delinsTR	ENST00000326873	NM_000455.4	182	CTGCTGCTCACCACCGgt/ACCCgt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2207577	2207582	+	inframe_deletion	In_Frame_Del	DEL	CGGCAC	CGGCAC	-			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	117	383	0	ENST00000398665.3:c.862_867del	p.Gly288_Thr289del	p.G288_T289del	ENST00000398665	NM_032482.2	287	atCGGCACc/atc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980883	40980883	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	127	425	1	ENST00000373198.4:c.1603C>A	p.Leu535Ile	p.L535I	ENST00000373198	NM_133170.3	535	Ctc/Atc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101908876	101908876	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	194	599	0	ENST00000374994.4:c.1240C>T	p.Arg414Ter	p.R414*	ENST00000374994	NM_004612.2	414	Cga/Tga																																																																															
ABL1	25	MSKCC	GRCh37	9	133750311	133750311	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	173	522	0	ENST00000318560.5:c.1142A>T	p.Asp381Val	p.D381V	ENST00000318560	NM_005157.4	381	gAt/gTt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983088	201983098	+	frameshift_variant	Frame_Shift_Del	DEL	CAACTATGGGG	CAACTATGGGG	A			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	165	525	0	ENST00000359651.3:c.937_947delinsA	p.Gln313ThrfsTer9	p.Q313Tfs*9	ENST00000359651		313	CAACTATGGGGc/Ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	391	497	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	169	260	0	ENST00000257430.4:c.4063dup	p.Ser1355PhefsTer20	p.S1355Ffs*20	ENST00000257430	NM_000038.5	1353	-/T																																																																															
ATM	472	MSKCC	GRCh37	11	108124767	108124767	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0033858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	76	281	0	ENST00000278616.4:c.2124+1G>A		p.X708_splice	ENST00000278616	NM_000051.3	708																																																																																
BRIP1	83990	MSKCC	GRCh37	17	59820385	59820385	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	36	449	0	ENST00000259008.2:c.2368A>G	p.Lys790Glu	p.K790E	ENST00000259008	NM_032043.2	790	Aaa/Gaa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500337	8500815	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCATCAATGTCTCTGAAATATGTAAGACAAAAAGGCAACAAAAAGGTAAGAAGGTAGTTTTGAAAAGTTAACTTCAAAATGTAAAAGAAGTGACTACAAAAAGCCAAGAAAAACACAGAAGACTTTAGATGGAGGCACAGAGACGGGCTGGACTGCAAGACCATAGGAGCCAACAGTTCTTTTAAAGAGAAGCAAATTACTGCATTGAGATTGAAAAAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAGGCTGTAGCAAAGACAAGTCTTTGGCAAAAATACTAAAGTAACAGCAATGCTGGGTAAAAAGATGAGCAGAGAAAAAAGATTACTGTGAGCCTATTGAAAGACAGCAGATCAAGACTGTGTCAGAAGGGTGCAAACTGACGTAGCGGAGGCAACATACCATCTTCATTGGTTCGAATCAACACGGACAAGCTCTCAGGGCCAGGGCCGACATCTGTATGG	GCATCAATGTCTCTGAAATATGTAAGACAAAAAGGCAACAAAAAGGTAAGAAGGTAGTTTTGAAAAGTTAACTTCAAAATGTAAAAGAAGTGACTACAAAAAGCCAAGAAAAACACAGAAGACTTTAGATGGAGGCACAGAGACGGGCTGGACTGCAAGACCATAGGAGCCAACAGTTCTTTTAAAGAGAAGCAAATTACTGCATTGAGATTGAAAAAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAGGCTGTAGCAAAGACAAGTCTTTGGCAAAAATACTAAAGTAACAGCAATGCTGGGTAAAAAGATGAGCAGAGAAAAAAGATTACTGTGAGCCTATTGAAAGACAGCAGATCAAGACTGTGTCAGAAGGGTGCAAACTGACGTAGCGGAGGCAACATACCATCTTCATTGGTTCGAATCAACACGGACAAGCTCTCAGGGCCAGGGCCGACATCTGTATGG	-			P-0033858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	76	1	0	ENST00000356435.5:c.2067_2128+417del		p.X689_splice	ENST00000356435		689																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	372	738	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0034093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	58	290	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
NUP93	9688	MSKCC	GRCh37	16	56875738	56875738	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147381896		P-0034093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	187	407	0	ENST00000308159.5:c.2342G>A	p.Arg781His	p.R781H	ENST00000308159	NM_014669.4	781	cGc/cAc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480306	89480306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	71	276	0	ENST00000336596.2:c.2143G>T	p.Asp715Tyr	p.D715Y	ENST00000336596	NM_005233.5	715	Gat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112111364	112111364	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	87	195	1	ENST00000257430.4:c.465del	p.Asp156ThrfsTer14	p.D156Tfs*14	ENST00000257430	NM_000038.5	154	gAa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0034143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	287	503	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11169741	11169741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	65	438	1	ENST00000361445.4:c.7412C>T	p.Thr2471Met	p.T2471M	ENST00000361445	NM_004958.3	2471	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112176027	112176030	+	frameshift_variant	Frame_Shift_Del	DEL	TTAT	TTAT	-			P-0034143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	56	247	0	ENST00000257430.4:c.4738_4741del	p.Ile1580LeufsTer69	p.I1580Lfs*69	ENST00000257430	NM_000038.5	1579	aTTATt/at																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710592	114710592	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	115	310	0	ENST00000543371.1:c.78del	p.Glu26AspfsTer16	p.E26Dfs*16	ENST00000543371	NM_001198531.1	26	gAa/ga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15295726	15295726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	48	532	1	ENST00000263388.2:c.2401G>A	p.Gly801Ser	p.G801S	ENST00000263388	NM_000435.2	801	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112174079	112174080	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0034143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	48	317	0	ENST00000257430.4:c.2791_2792del	p.His931PhefsTer8	p.H931Ffs*8	ENST00000257430	NM_000038.5	930	ACa/a																																																																															
STK11	6794	MSKCC	GRCh37	19	1220502	1220502	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0034908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	500	688	0	ENST00000326873.7:c.595G>T	p.Glu199Ter	p.E199*	ENST00000326873	NM_000455.4	199	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	597	835	1	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578548	7578548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	598	823	1	ENST00000269305.4:c.382C>T	p.Pro128Ser	p.P128S	ENST00000269305	NM_001126112.2	128	Cct/Tct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088799	27088799	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	293	398	0	ENST00000324856.7:c.2408A>G	p.Tyr803Cys	p.Y803C	ENST00000324856	NM_006015.4	803	tAt/tGt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843498	3843498	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0034908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	444	586	0	ENST00000262367.5:c.1105A>T	p.Arg369Ter	p.R369*	ENST00000262367	NM_004380.2	369	Aga/Tga																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62305393	62305393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	438	668	0	ENST00000508582.2:c.938C>T	p.Ala313Val	p.A313V	ENST00000508582		313	gCa/gTa																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182670	38182670	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	583	432	0	ENST00000396334.3:c.823A>G	p.Lys275Glu	p.K275E	ENST00000396334	NM_002468.4	275	Aaa/Gaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0034988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	116	478	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0034988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	99	414	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10248648	10248648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	128	549	0	ENST00000340748.4:c.4105G>A	p.Asp1369Asn	p.D1369N	ENST00000340748		1369	Gac/Aac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114905777	114905777	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	119	505	0	ENST00000543371.1:c.796C>T	p.Gln266Ter	p.Q266*	ENST00000543371	NM_001198531.1	266	Caa/Taa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131244	17131244	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	190	907	0	ENST00000285071.4:c.208G>T	p.Glu70Ter	p.E70*	ENST00000285071	NM_144997.5	70	Gag/Tag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86676359	86676359	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	71	317	0	ENST00000274376.6:c.2637A>C	p.Lys879Asn	p.K879N	ENST00000274376	NM_002890.2	879	aaA/aaC																																																																															
APC	324	MSKCC	GRCh37	5	112175249	112175249	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	134	294	0	ENST00000257430.4:c.3958del	p.Val1320Ter	p.V1320*	ENST00000257430	NM_000038.5	1320	Gtg/tg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137309090	137309090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	185	1037	0	ENST00000481739.1:c.697G>C	p.Glu233Gln	p.E233Q	ENST00000481739	NM_002957.4	233	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786204041		P-0035127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	209	714	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0035127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	141	720	1	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259578	89259578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	95	449	0	ENST00000336596.2:c.722G>A	p.Arg241Lys	p.R241K	ENST00000336596	NM_005233.5	241	aGg/aAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	432	724	2	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087587	27087587	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0035127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	134	567	0	ENST00000324856.7:c.2161G>T	p.Gly721Cys	p.G721C	ENST00000324856	NM_006015.4	721	Ggc/Tgc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251805	212251805	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	87	402	0	ENST00000342788.4:c.3254C>G	p.Thr1085Ser	p.T1085S	ENST00000342788	NM_005235.2	1085	aCt/aGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55231434	55231434	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	162	628	0	ENST00000275493.2:c.1640G>A	p.Arg547Lys	p.R547K	ENST00000275493	NM_005228.3	547	aGg/aAg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139566379	139566379	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0035127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	154	652	0	ENST00000308874.7:c.638A>C	p.Lys213Thr	p.K213T	ENST00000308874		213	aAg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	231	734	0	ENST00000269305.4:c.772G>C	p.Glu258Gln	p.E258Q	ENST00000269305	NM_001126112.2	258	Gaa/Caa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593491	48593494	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0035154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	75	384	0	ENST00000342988.3:c.1245_1248del	p.Asp415GlufsTer20	p.D415Efs*20	ENST00000342988	NM_005359.5	414	ttAGAC/tt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520087	106520087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	52	331	1	ENST00000359195.3:c.2515C>T	p.Arg839Cys	p.R839C	ENST00000359195	NM_002649.2	839	Cgc/Tgc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324509	31324509	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs41553715		P-0035154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	20	433	6	ENST00000412585.2:c.299A>T	p.Glu100Val	p.E100V	ENST00000412585	NM_005514.6	100	gAg/gTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971150	21971173	+	inframe_deletion	In_Frame_Del	DEL	GCTCCGCGCCGTGGAGCAGCAGCA	GCTCCGCGCCGTGGAGCAGCAGCA	-			P-0035154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	88	429	0	ENST00000304494.5:c.185_208del	p.Leu62_Glu69del	p.L62_E69del	ENST00000304494	NM_000077.4	62	cTGCTGCTGCTCCACGGCGCGGAGCcc/ccc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619810	1619810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	154	717	1	ENST00000344749.5:c.1136C>T	p.Ser379Leu	p.S379L	ENST00000344749	NM_001136139.2	379	tCg/tTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120740	115120740	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	168	672	0	ENST00000257566.3:c.266C>A	p.Pro89His	p.P89H	ENST00000257566	NM_016569.3	89	cCt/cAt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266058	41266274	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTG	AAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTG	-			P-0035154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	60	348	0	ENST00000349496.5:c.59_241+34del		p.X20_splice	ENST00000349496	NM_001904.3	20																																																																																
INPP4B	8821	MSKCC	GRCh37	4	142950045	142950045	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	96	553	0	ENST00000262992.4:c.2665G>C	p.Val889Leu	p.V889L	ENST00000262992	NM_001101669.1	889	Gta/Cta																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589547	67589582	+	inframe_deletion	In_Frame_Del	DEL	TCAAAGAAGATAATATTGAAGCTGTAGGGAAAAAAT	TCAAAGAAGATAATATTGAAGCTGTAGGGAAAAAAT	-			P-0035154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	45	229	0	ENST00000274335.5:c.1311_1346del	p.Lys438_Leu449del	p.K438_L449del	ENST00000274335		437	gTCAAAGAAGATAATATTGAAGCTGTAGGGAAAAAATta/gta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0035175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	245	691	5	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411216	63411216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	101	668	2	ENST00000330258.3:c.1951G>A	p.Val651Ile	p.V651I	ENST00000330258	NM_152424.3	651	Gtc/Atc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0035175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	193	568	2	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782071	9782071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	118	700	4	ENST00000377346.4:c.2094C>A	p.Phe698Leu	p.F698L	ENST00000377346	NM_005026.3	698	ttC/ttA																																																																															
PGR	5241	MSKCC	GRCh37	11	100999732	100999732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	223	685	4	ENST00000325455.5:c.70G>A	p.Gly24Arg	p.G24R	ENST00000325455	NM_001202474.3	24	Gga/Aga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492904	56492905	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0035175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	187	328	2	ENST00000407977.2:c.33_34dup	p.Leu12ProfsTer7	p.L12Pfs*7	ENST00000407977		12	ctc/cCCtc																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17389843	17389843	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	26	816	0	ENST00000359435.4:c.976G>C	p.Glu326Gln	p.E326Q	ENST00000359435	NM_001033549.1	326	Gag/Cag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165684	47165684	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	60	659	0	ENST00000409792.3:c.442C>G	p.Leu148Val	p.L148V	ENST00000409792	NM_014159.6	148	Ctg/Gtg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851565	134851565	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0035175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	37	501	0	ENST00000398015.3:c.971C>G	p.Ser324Ter	p.S324*	ENST00000398015	NM_004441.4	324	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0035209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	58	804	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795019	242795019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	52	1045	1	ENST00000334409.5:c.190G>A	p.Val64Met	p.V64M	ENST00000334409	NM_005018.2	64	Gtg/Atg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476388	88476388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	36	538	0	ENST00000360948.2:c.1744C>T	p.Arg582Trp	p.R582W	ENST00000360948	NM_001012338.2	582	Cgg/Tgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188187	32188187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	63	612	3	ENST00000375023.3:c.1154G>A	p.Arg385His	p.R385H	ENST00000375023	NM_004557.3	385	cGc/cAc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472558	88472558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	29	599	1	ENST00000360948.2:c.1997G>A	p.Gly666Asp	p.G666D	ENST00000360948	NM_001012338.2	666	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574035	7574035	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0035209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	90	625	0	ENST00000269305.4:c.994-2A>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0035549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	235	827	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0035549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	39	323	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	105	419	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332607	153332607	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	257	467	0	ENST00000281708.4:c.349G>T	p.Glu117Ter	p.E117*	ENST00000281708	NM_033632.3	117	Gag/Tag																																																																															
CDK8	1024	MSKCC	GRCh37	13	26967567	26967567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	821	530	1	ENST00000381527.3:c.710G>A	p.Arg237Gln	p.R237Q	ENST00000381527	NM_001260.1	237	cGa/cAa																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633551	69633551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	38	335	1	ENST00000334134.2:c.151G>A	p.Ala51Thr	p.A51T	ENST00000334134	NM_005247.2	51	Gcc/Acc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857779	9857779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	126	633	0	ENST00000330684.3:c.3622C>T	p.Arg1208Trp	p.R1208W	ENST00000330684	NM_001134407.1	1208	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	140	430	1	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
CCND2	894	MSKCC	GRCh37	12	4383252	4383252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	54	355	3	ENST00000261254.3:c.46C>T	p.Arg16Trp	p.R16W	ENST00000261254	NM_001759.3	16	Cgg/Tgg																																																																															
NF2	4771	MSKCC	GRCh37	22	30061031	30061031	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	164	442	0	ENST00000338641.4:c.863C>G	p.Ser288Ter	p.S288*	ENST00000338641	NM_000268.3	288	tCa/tGa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098380	11098380	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	76	573	1	ENST00000344626.4:c.898C>T	p.Gln300Ter	p.Q300*	ENST00000344626	NM_003072.3	300	Cag/Tag																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18274166	18274166	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	56	433	0	ENST00000222254.8:c.1384C>T	p.Gln462Ter	p.Q462*	ENST00000222254	NM_005027.3	462	Cag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259540	16259540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	67	417	0	ENST00000375759.3:c.6805G>A	p.Val2269Ile	p.V2269I	ENST00000375759	NM_015001.2	2269	Gta/Ata																																																																															
ARID2	196528	MSKCC	GRCh37	12	46125006	46125006	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	50	274	0	ENST00000334344.6:c.193G>C	p.Glu65Gln	p.E65Q	ENST00000334344	NM_152641.2	65	Gag/Cag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121912	2121912	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	99	827	2	ENST00000219476.3:c.2074G>T	p.Val692Phe	p.V692F	ENST00000219476	NM_000548.3	692	Gtc/Ttc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225924	2225927	+	frameshift_variant	Frame_Shift_Del	DEL	TGTC	TGTC	-			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	73	731	0	ENST00000326181.6:c.1719_1722del	p.Cys574AlafsTer59	p.C574Afs*59	ENST00000326181	NM_032271.2	572	atTGTC/at																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273900	10273901	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	92	700	2	ENST00000330684.3:c.368_369delinsAA	p.Pro123Gln	p.P123Q	ENST00000330684	NM_001134407.1	123	cCC/cAA																																																																															
STK11	6794	MSKCC	GRCh37	19	1207131	1207131	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	104	752	0	ENST00000326873.7:c.219del	p.Cys73Ter	p.C73*	ENST00000326873	NM_000455.4	73	tgC/tg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602562	10602562	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	69	657	0	ENST00000171111.5:c.1016T>C	p.Leu339Pro	p.L339P	ENST00000171111	NM_203500.1	339	cTc/cCc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098392	11098392	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	72	545	0	ENST00000344626.4:c.910C>G	p.Pro304Ala	p.P304A	ENST00000344626	NM_003072.3	304	Ccc/Gcc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287202	33287202	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	81	530	0	ENST00000374542.5:c.1895C>G	p.Ser632Cys	p.S632C	ENST00000374542	NM_001141970.1	632	tCt/tGt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289085	33289085	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	104	645	0	ENST00000374542.5:c.467C>G	p.Ser156Cys	p.S156C	ENST00000374542	NM_001141970.1	156	tCt/tGt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932895	39932896	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	63	619	3	ENST00000378444.4:c.1703_1704delinsTT	p.Ala568Val	p.A568V	ENST00000378444	NM_001123385.1	568	gCC/gTT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039323	47039350	+	frameshift_variant	Frame_Shift_Del	DEL	ATCCTGGGGGCCCTGGCACCCTACGCGG	ATCCTGGGGGCCCTGGCACCCTACGCGG	-			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	102	709	0	ENST00000329236.7:c.715_742del	p.Ile239CysfsTer10	p.I239Cfs*10	ENST00000329236	NM_001204466.1	239	ATCCTGGGGGCCCTGGCACCCTACGCGGtg/tg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410546	63410546	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	88	722	1	ENST00000330258.3:c.2621del	p.Gly874AspfsTer102	p.G874Dfs*102	ENST00000330258	NM_152424.3	874	gGa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	93	431	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0035590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	61	238	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578446	7578446	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	66	643	0	ENST00000269305.4:c.484A>T	p.Ile162Phe	p.I162F	ENST00000269305	NM_001126112.2	162	Atc/Ttc																																																																															
MAX	4149	MSKCC	GRCh37	14	65544682	65544682	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	138	647	0	ENST00000358664.4:c.244C>T	p.Gln82Ter	p.Q82*	ENST00000358664	NM_002382.4	82	Cag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109908	115109908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	69	235	0	ENST00000257566.3:c.1970C>A	p.Thr657Asn	p.T657N	ENST00000257566	NM_016569.3	657	aCc/aAc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39746901	39746901	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	24	266	0	ENST00000361337.2:c.1915A>T	p.Thr639Ser	p.T639S	ENST00000361337	NM_003286.2	639	Act/Tct																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46256341	46256341	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	24	343	0	ENST00000371998.3:c.569A>T	p.Gln190Leu	p.Q190L	ENST00000371998		190	cAa/cTa																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72890317	72890317	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	116	376	0	ENST00000325599.8:c.365A>T	p.Asp122Val	p.D122V	ENST00000325599	NM_018130.2	122	gAt/gTt																																																																															
ATR	545	MSKCC	GRCh37	3	142277521	142277521	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	42	355	0	ENST00000350721.4:c.1830G>C	p.Leu610Phe	p.L610F	ENST00000350721	NM_001184.3	610	ttG/ttC																																																																															
ATR	545	MSKCC	GRCh37	3	142280253	142280253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	59	320	0	ENST00000350721.4:c.1181G>A	p.Gly394Asp	p.G394D	ENST00000350721	NM_001184.3	394	gGc/gAc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056364	26056364	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	42	362	0	ENST00000343677.2:c.293G>T	p.Gly98Val	p.G98V	ENST00000343677	NM_005319.3	98	gGc/gTc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0035592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	130	544	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28631508	28631508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	89	464	0	ENST00000241453.7:c.460A>G	p.Ile154Val	p.I154V	ENST00000241453	NM_004119.2	154	Ata/Gta																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061197	38061235	+	inframe_deletion	In_Frame_Del	DEL	CTTCTGGCGGCGCAAGTAGCAGCCGTTCTCGAACATGTT	CTTCTGGCGGCGCAAGTAGCAGCCGTTCTCGAACATGTT	-			P-0035592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	202	383	0	ENST00000250448.2:c.754_792del	p.Asn252_Lys264del	p.N252_K264del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTGCTACTTGCGCCGCCAGAAG/-																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505516	25505516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	145	763	1	ENST00000264709.3:c.242A>G	p.Asp81Gly	p.D81G	ENST00000264709	NM_175629.2	81	gAc/gGc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46211626	46211626	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	69	645	0	ENST00000334344.6:c.592A>T	p.Lys198Ter	p.K198*	ENST00000334344	NM_152641.2	198	Aaa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0034677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	381	587	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0034677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	125	334	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0034677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	335	398	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519980		P-0034677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	248	589	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552822		P-0034677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	145	351	3	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249091	55249091	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519861		P-0034677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1255	228	625	0	ENST00000275493.2:c.2389T>A	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	Tgc/Agc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221107	5221107	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	206	586	0	ENST00000357368.4:c.3359A>G	p.Asn1120Ser	p.N1120S	ENST00000357368	NM_002850.3	1120	aAc/aGc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1920322	1920322	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	264	667	1	ENST00000382891.5:c.1382T>C	p.Leu461Ser	p.L461S	ENST00000382891	NM_133335.3	461	tTg/tCg																																																																															
KIT	3815	MSKCC	GRCh37	4	55575700	55575700	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	26	342	0	ENST00000288135.5:c.1226T>C	p.Val409Ala	p.V409A	ENST00000288135	NM_000222.2	409	gTg/gCg																																																																															
RARA	5914	MSKCC	GRCh37	17	38512270	38512270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	104	712	0	ENST00000254066.5:c.1181G>A	p.Arg394Gln	p.R394Q	ENST00000254066	NM_000964.3	394	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	88	620	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602354	10602354	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	220	1063	1	ENST00000171111.5:c.1224del	p.Met409Ter	p.M409*	ENST00000171111	NM_203500.1	408	ccC/cc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	216	507	0	ENST00000329236.7:c.1459+1G>A		p.X487_splice	ENST00000329236	NM_001204466.1	487																																																																																
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	128	575	0	ENST00000269305.4:c.375+1delG		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
TBX3	6926	MSKCC	GRCh37	12	115112197	115112197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	98	550	0	ENST00000257566.3:c.1543G>T	p.Gly515Trp	p.G515W	ENST00000257566	NM_016569.3	515	Ggg/Tgg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46583304	46583304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	127	402	1	ENST00000263734.3:c.232G>A	p.Glu78Lys	p.E78K	ENST00000263734	NM_001430.4	78	Gag/Aag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942049	81942049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	79	560	0	ENST00000359376.3:c.1586G>A	p.Gly529Glu	p.G529E	ENST00000359376	NM_002661.3	529	gGg/gAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971206	21971206	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	94	375	0	ENST00000304494.5:c.152T>A	p.Val51Asp	p.V51D	ENST00000304494	NM_000077.4	51	gTc/gAc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752341	57752341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	45	573	0	ENST00000274289.3:c.1232C>T	p.Pro411Leu	p.P411L	ENST00000274289	NM_006622.3	411	cCc/cTc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28636186	28636186	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	135	578	0	ENST00000241453.7:c.186C>A	p.Asp62Glu	p.D62E	ENST00000241453	NM_004119.2	62	gaC/gaA																																																																															
MITF	4286	MSKCC	GRCh37	3	70014070	70014070	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	126	641	0	ENST00000352241.4:c.1234G>T	p.Val412Leu	p.V412L	ENST00000352241	NM_198159.2	412	Gtg/Ttg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55138680	55138680	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	100	482	0	ENST00000257290.5:c.1357A>C	p.Ile453Leu	p.I453L	ENST00000257290	NM_006206.4	453	Att/Ctt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176709571	176709571	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	71	457	0	ENST00000439151.2:c.5998A>T	p.Thr2000Ser	p.T2000S	ENST00000439151	NM_022455.4	2000	Acc/Tcc																																																																															
ABL1	25	MSKCC	GRCh37	9	133738155	133738155	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	50	493	0	ENST00000318560.5:c.555C>A	p.Tyr185Ter	p.Y185*	ENST00000318560	NM_005157.4	185	taC/taA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	390	413	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243858956	243858957	+	stop_gained	Nonsense_Mutation	DNP	CT	CT	AC			P-0035575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	69	396	1	ENST00000263826.5:c.108_109delinsGT	p.Ile36_Gly37delinsMetTer	p.I36_G37delinsM*	ENST00000263826	NM_005465.4	36	atAGga/atGTga																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137199	64137199	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	168	367	0	ENST00000334205.4:c.1631G>T	p.Gly544Val	p.G544V	ENST00000334205	NM_003942.2	544	gGg/gTg																																																																															
ATM	472	MSKCC	GRCh37	11	108204637	108204637	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	98	189	0	ENST00000278616.4:c.7952A>G	p.Gln2651Arg	p.Q2651R	ENST00000278616	NM_000051.3	2651	cAg/cGg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123888	46123909	+	frameshift_variant	Frame_Shift_Del	DEL	ACCAGAGTCACTACTTTAGGCG	ACCAGAGTCACTACTTTAGGCG	-			P-0035575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	37	210	0	ENST00000334344.6:c.154_175del	p.Thr52AspfsTer31	p.T52Dfs*31	ENST00000334344	NM_152641.2	52	ACCAGAGTCACTACTTTAGGCGga/ga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868668	37868668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1303	103	417	0	ENST00000269571.5:c.1115G>A	p.Gly372Glu	p.G372E	ENST00000269571		372	gGg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921571	178921571	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	56	256	0	ENST00000263967.3:c.1053T>G	p.Ile351Met	p.I351M	ENST00000263967	NM_006218.2	351	atT/atG																																																																															
KDR	3791	MSKCC	GRCh37	4	55955043	55955043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	73	327	0	ENST00000263923.4:c.3502G>A	p.Ala1168Thr	p.A1168T	ENST00000263923	NM_002253.2	1168	Gct/Act																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188754	32188754	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0035575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	73	364	0	ENST00000375023.3:c.799+1G>T		p.X267_splice	ENST00000375023	NM_004557.3	267																																																																																
TAP1	6890	MSKCC	GRCh37	6	32821139	32821139	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	266	457	1	ENST00000354258.4:c.455G>A	p.Trp152Ter	p.W152*	ENST00000354258	NM_000593.5	152	tGg/tAg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932735	39932735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	129	652	0	ENST00000378444.4:c.1864C>A	p.Pro622Thr	p.P622T	ENST00000378444	NM_001123385.1	622	Cca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	8	445	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0035579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	37	683	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0035579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	217	330	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
NPM1	4869	MSKCC	GRCh37	5	170827907	170827909	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0035579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	10	572	0	ENST00000296930.5:c.652_654del	p.Ser218del	p.S218del	ENST00000296930	NM_002520.6	216	cCATca/cca																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420314	88420314	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767941638		P-0035579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	12	431	3	ENST00000360948.2:c.2372G>A	p.Arg791Gln	p.R791Q	ENST00000360948	NM_001012338.2	791	cGg/cAg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17118613	17118613	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	13	430	0	ENST00000285071.4:c.1318G>C	p.Glu440Gln	p.E440Q	ENST00000285071	NM_144997.5	440	Gag/Cag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639354	3639355	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0035579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	11	770	0	ENST00000294008.3:c.4284_4285insTG	p.His1429CysfsTer22	p.H1429Cfs*22	ENST00000294008	NM_032444.2	1428	-/TG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	145	492	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0035620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	173	360	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
BRAF	673	MSKCC	GRCh37	7	140477807	140477807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	193	530	0	ENST00000288602.6:c.1501G>A	p.Glu501Lys	p.E501K	ENST00000288602	NM_004333.4	501	Gaa/Aaa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56480335	56480335	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	156	483	0	ENST00000267101.3:c.442T>C	p.Tyr148His	p.Y148H	ENST00000267101	NM_001982.3	148	Tat/Cat																																																																															
TEK	7010	MSKCC	GRCh37	9	27180321	27180327	+	frameshift_variant	Frame_Shift_Ins	INS	TGTCTCT	TGTCTCT	AGCGATCACAGGATGGCAGGG			P-0035620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	154	541	0	ENST00000380036.4:c.985_991delinsAGCGATCACAGGATGGCAGGG	p.Cys329SerfsTer25	p.C329Sfs*25	ENST00000380036	NM_000459.3	329	TGTCTCTgc/AGCGATCACAGGATGGCAGGGgc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248528	212248528	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	184	650	1	ENST00000342788.4:c.3739C>A	p.Leu1247Met	p.L1247M	ENST00000342788	NM_005235.2	1247	Ctg/Atg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434426	110434426	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	49	485	0	ENST00000375856.3:c.3975C>G	p.Phe1325Leu	p.F1325L	ENST00000375856	NM_003749.2	1325	ttC/ttG																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949198	71949198	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	58	766	0	ENST00000298229.2:c.3665G>A	p.Trp1222Ter	p.W1222*	ENST00000298229	NM_001567.3	1222	tGg/tAg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793433	18793433	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	115	518	0	ENST00000266497.5:c.4130G>C	p.Arg1377Pro	p.R1377P	ENST00000266497		1377	cGt/cCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577087	7577114	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCGCCGGTCTCTCCCAGGACAGGCAC	GTGCGCCGGTCTCTCCCAGGACAGGCAC	-			P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	99	743	1	ENST00000269305.4:c.824_851del	p.Cys275Ter	p.C275*	ENST00000269305	NM_001126112.2	275	tGTGCCTGTCCTGGGAGAGACCGGCGCACa/ta																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379742	17379742	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	91	752	0	ENST00000359435.4:c.127G>T	p.Ala43Ser	p.A43S	ENST00000359435	NM_001033549.1	43	Gcc/Tcc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25466830	25466830	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	112	539	0	ENST00000264709.3:c.1873C>G	p.Pro625Ala	p.P625A	ENST00000264709	NM_175629.2	625	Cct/Gct																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22221657	22221657	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	40	134	0	ENST00000215832.6:c.74A>T	p.Tyr25Phe	p.Y25F	ENST00000215832	NM_002745.4	25	tAc/tTc																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182679134	182679134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	145	565	0	ENST00000292782.4:c.400A>G	p.Ile134Val	p.I134V	ENST00000292782	NM_020640.2	134	Ata/Gta																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056602	26056602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	52	255	0	ENST00000343677.2:c.55C>T	p.Pro19Ser	p.P19S	ENST00000343677	NM_005319.3	19	Cct/Tct																																																																															
JAK2	3717	MSKCC	GRCh37	9	5078442	5078442	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	73	431	0	ENST00000381652.3:c.2129A>T	p.Asp710Val	p.D710V	ENST00000381652	NM_004972.3	710	gAc/gTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521355	8521355	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200703886		P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	123	647	1	ENST00000356435.5:c.883A>G	p.Arg295Gly	p.R295G	ENST00000356435		295	Aga/Gga																																																																															
MED12	9968	MSKCC	GRCh37	X	70352801	70352801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	70	328	0	ENST00000374080.3:c.4522C>T	p.His1508Tyr	p.H1508Y	ENST00000374080		1508	Cac/Tac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005813-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			329	353	108	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
DICER1	23405	MSKCC	GRCh37	14	95571448	95571448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005813-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			319	42	120	0	ENST00000343455.3:c.3229G>A	p.Asp1077Asn	p.D1077N	ENST00000343455	NM_177438.2	1077	Gat/Aat																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467380	66467380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005813-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			194	35	76	0	ENST00000273854.3:c.889G>A	p.Glu297Lys	p.E297K	ENST00000273854	NM_004439.5	297	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115701	8115701	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0005813-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			99	38	80	1	ENST00000346208.3:c.1048-1G>A		p.X350_splice	ENST00000346208		350																																																																																
TP53	7157	MSKCC	GRCh37	17	7578524	7578541	+	inframe_deletion	In_Frame_Del	DEL	GGCAAAACATCTTGTTGA	GGCAAAACATCTTGTTGA	-			P-0005813-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			551	49	424	0	ENST00000269305.4:c.389_406del	p.Leu130_Cys135del	p.L130_C135del	ENST00000269305	NM_001126112.2	130	cTCAACAAGATGTTTTGCCaa/caa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0035481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	109	267	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
GATA1	2623	MSKCC	GRCh37	X	48651631	48651631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	84	671	1	ENST00000376670.3:c.797C>T	p.Thr266Met	p.T266M	ENST00000376670	NM_002049.3	266	aCg/aTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157510805	157510806	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0035481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	67	520	0	ENST00000346085.5:c.3586dup	p.Gln1196ProfsTer14	p.Q1196Pfs*14	ENST00000346085	NM_020732.3	1194	acc/aCcc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600447	10600447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	102	732	3	ENST00000171111.5:c.1408C>T	p.Arg470Cys	p.R470C	ENST00000171111	NM_203500.1	470	Cgt/Tgt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522416	176522416	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	214	747	0	ENST00000292408.4:c.1605C>G	p.Asn535Lys	p.N535K	ENST00000292408	NM_213647.1	535	aaC/aaG																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22127167	22127167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	74	510	0	ENST00000215832.6:c.961G>A	p.Asp321Asn	p.D321N	ENST00000215832	NM_002745.4	321	Gac/Aac																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197187	26197187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	65	545	0	ENST00000356476.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000356476		98	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68844139	68844139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	86	636	0	ENST00000261769.5:c.727G>A	p.Glu243Lys	p.E243K	ENST00000261769	NM_004360.3	243	Gag/Aag																																																																															
INHA	3623	MSKCC	GRCh37	2	220440114	220440114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	110	859	0	ENST00000243786.2:c.967G>A	p.Gly323Arg	p.G323R	ENST00000243786	NM_002191.3	323	Ggg/Agg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504433	186504433	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0035481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	72	413	0	ENST00000323963.5:c.770A>G	p.Glu257Gly	p.E257G	ENST00000323963		257	gAg/gGg																																																																															
MET	4233	MSKCC	GRCh37	7	116435793	116435793	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	101	632	0	ENST00000397752.3:c.3883T>C	p.Tyr1295His	p.Y1295H	ENST00000397752	NM_000245.2	1295	Tac/Cac																																																																															
SETD2	29072	MSKCC	GRCh37	3	47142964	47142964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	31	480	0	ENST00000409792.3:c.4999C>G	p.Gln1667Glu	p.Q1667E	ENST00000409792	NM_014159.6	1667	Cag/Gag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943737	71943737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	145	824	0	ENST00000298229.2:c.1780G>T	p.Asp594Tyr	p.D594Y	ENST00000298229	NM_001567.3	594	Gac/Tac																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2491309	2491309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	152	739	0	ENST00000355716.4:c.352G>A	p.Val118Met	p.V118M	ENST00000355716	NM_003820.2	118	Gtg/Atg																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073804	8073804	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	88	362	0	ENST00000377482.5:c.855del	p.Arg286GlufsTer9	p.R286Efs*9	ENST00000377482	NM_018948.3	285	ccC/cc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257968	16257968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	23	473	0	ENST00000375759.3:c.5233G>A	p.Ala1745Thr	p.A1745T	ENST00000375759	NM_015001.2	1745	Gca/Aca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16264487	16264487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	37	485	2	ENST00000375759.3:c.10690G>A	p.Ala3564Thr	p.A3564T	ENST00000375759	NM_015001.2	3564	Gcc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056211	27056211	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	32	450	0	ENST00000324856.7:c.1207C>T	p.Gln403Ter	p.Q403*	ENST00000324856	NM_006015.4	403	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27058018	27058018	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	115	462	0	ENST00000324856.7:c.1726C>T	p.Gln576Ter	p.Q576*	ENST00000324856	NM_006015.4	576	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100946	27100946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	106	530	1	ENST00000324856.7:c.4228C>T	p.Pro1410Ser	p.P1410S	ENST00000324856	NM_006015.4	1410	Ccc/Tcc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106105	27106105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	33	479	1	ENST00000324856.7:c.5716C>T	p.Arg1906Trp	p.R1906W	ENST00000324856	NM_006015.4	1906	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107159	27107159	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	51	603	0	ENST00000324856.7:c.6770G>T	p.Arg2257Leu	p.R2257L	ENST00000324856	NM_006015.4	2257	cGg/cTg																																																																															
STK40	83931	MSKCC	GRCh37	1	36809476	36809476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	35	605	1	ENST00000373129.3:c.989C>T	p.Ala330Val	p.A330V	ENST00000373129	NM_032017.1	330	gCc/gTc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935319	36935319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	153	759	0	ENST00000361632.4:c.1408G>A	p.Ala470Thr	p.A470T	ENST00000361632		470	Gcg/Acg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726435	46726435	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142433634		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	35	425	0	ENST00000371975.4:c.514C>T	p.Arg172Cys	p.R172C	ENST00000371975	NM_003579.3	172	Cgc/Tgc																																																																															
JUN	3725	MSKCC	GRCh37	1	59247938	59247938	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	155	731	0	ENST00000371222.2:c.805T>C	p.Cys269Arg	p.C269R	ENST00000371222	NM_002228.3	269	Tgc/Cgc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65349076	65349076	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	134	584	0	ENST00000342505.4:c.89A>G	p.Glu30Gly	p.E30G	ENST00000342505	NM_002227.2	30	gAg/gGg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258681	115258681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	79	308	0	ENST00000369535.4:c.101C>A	p.Pro34His	p.P34H	ENST00000369535	NM_002524.4	34	cCc/cAc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115268831	115268831	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	106	514	3	ENST00000438362.2:c.1778+1G>A		p.X593_splice	ENST00000438362	NM_001242891.1	593																																																																																
FAM46C	54855	MSKCC	GRCh37	1	118166296	118166296	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	82	327	0	ENST00000369448.3:c.806A>G	p.Tyr269Cys	p.Y269C	ENST00000369448	NM_017709.3	269	tAc/tGc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120459239	120459239	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	105	473	1	ENST00000256646.2:c.6106C>T	p.Arg2036Ter	p.R2036*	ENST00000256646	NM_024408.3	2036	Cga/Tga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120508081	120508081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	62	301	0	ENST00000256646.2:c.1676C>T	p.Ala559Val	p.A559V	ENST00000256646	NM_024408.3	559	gCc/gTc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729614	162729614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	31	457	0	ENST00000367921.3:c.700G>A	p.Asp234Asn	p.D234N	ENST00000367921	NM_006182.2	234	Gat/Aat																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175916376	175916376	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	14	296	0	ENST00000367669.3:c.2134-1G>A		p.X712_splice	ENST00000367669	NM_022457.5	712																																																																																
RFWD2	64326	MSKCC	GRCh37	1	176104161	176104161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	22	378	0	ENST00000367669.3:c.953C>A	p.Pro318His	p.P318H	ENST00000367669	NM_022457.5	318	cCt/cAt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206646592	206646592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	47	790	0	ENST00000367120.3:c.22C>A	p.Leu8Met	p.L8M	ENST00000367120	NM_014002.3	8	Ctg/Atg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206652302	206652302	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	125	634	0	ENST00000367120.3:c.1009G>T	p.Glu337Ter	p.E337*	ENST00000367120	NM_014002.3	337	Gag/Tag																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612776	228612776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	142	663	0	ENST00000366696.1:c.251G>A	p.Arg84His	p.R84H	ENST00000366696	NM_003493.2	84	cGc/cAc																																																																															
FH	2271	MSKCC	GRCh37	1	241669413	241669413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	131	434	4	ENST00000366560.3:c.794C>T	p.Ala265Val	p.A265V	ENST00000366560	NM_000143.3	265	gCc/gTc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097820	8097820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	30	541	0	ENST00000346208.3:c.202G>A	p.Val68Ile	p.V68I	ENST00000346208		68	Gtc/Atc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106003	8106003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	121	398	0	ENST00000346208.3:c.823C>T	p.Arg275Trp	p.R275W	ENST00000346208		275	Cgg/Tgg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63661933	63661933	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	100	361	0	ENST00000279873.7:c.37T>C	p.Cys13Arg	p.C13R	ENST00000279873	NM_032199.2	13	Tgt/Cgt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852217	63852217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	39	511	1	ENST00000279873.7:c.2995C>T	p.Arg999Trp	p.R999W	ENST00000279873	NM_032199.2	999	Cgg/Tgg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332152	70332153	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	36	222	0	ENST00000373644.4:c.65dup	p.Lys23GlufsTer37	p.K23Efs*37	ENST00000373644	NM_030625.2	19	-/A																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649890	88649890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	38	402	0	ENST00000372037.3:c.139G>A	p.Gly47Arg	p.G47R	ENST00000372037	NM_004329.2	47	Gga/Aga																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88672119	88672119	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	102	517	1	ENST00000372037.3:c.653G>T	p.Ser218Ile	p.S218I	ENST00000372037	NM_004329.2	218	aGt/aTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	47	521	0	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89712007	89712007	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	15	319	0	ENST00000371953.3:c.625G>T	p.Gly209Ter	p.G209*	ENST00000371953	NM_000314.4	209	Gga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89725076	89725076	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	28	166	0	ENST00000371953.3:c.1059G>T	p.Glu353Asp	p.E353D	ENST00000371953	NM_000314.4	353	gaG/gaT																																																																															
SUFU	51684	MSKCC	GRCh37	10	104356980	104356981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1477199832		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	34	527	0	ENST00000369902.3:c.846dup	p.Glu283ArgfsTer3	p.E283Rfs*3	ENST00000369902	NM_016169.3	280	-/C																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741382	17741382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	74	837	1	ENST00000250003.3:c.53G>A	p.Gly18Asp	p.G18D	ENST00000250003	NM_002478.4	18	gGc/gAc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137271	64137271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	196	628	0	ENST00000334205.4:c.1703C>T	p.Thr568Met	p.T568M	ENST00000334205	NM_003942.2	568	aCg/aTg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631162	69631162	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	89	603	0	ENST00000334134.2:c.250G>T	p.Gly84Cys	p.G84C	ENST00000334134	NM_005247.2	84	Ggc/Tgc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939791	71939791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	120	726	0	ENST00000298229.2:c.418C>T	p.Pro140Ser	p.P140S	ENST00000298229	NM_001567.3	140	Ccg/Tcg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948250	71948250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	49	949	1	ENST00000298229.2:c.2962G>A	p.Val988Ile	p.V988I	ENST00000298229	NM_001567.3	988	Gtc/Atc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948745	71948745	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	37	709	2	ENST00000298229.2:c.3457C>T	p.Gln1153Ter	p.Q1153*	ENST00000298229	NM_001567.3	1153	Cag/Tag																																																																															
SESN3	143686	MSKCC	GRCh37	11	94910884	94910884	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	27	412	0	ENST00000536441.1:c.1246A>G	p.Arg416Gly	p.R416G	ENST00000536441	NM_144665.3	416	Agg/Ggg																																																																															
PGR	5241	MSKCC	GRCh37	11	100920723	100920723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	149	523	0	ENST00000325455.5:c.2425G>T	p.Val809Phe	p.V809F	ENST00000325455	NM_001202474.3	809	Gtc/Ttc																																																																															
YAP1	10413	MSKCC	GRCh37	11	102033189	102033189	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	43	466	0	ENST00000282441.5:c.575A>G	p.His192Arg	p.H192R	ENST00000282441	NM_001130145.2	192	cAc/cGc																																																																															
ATM	472	MSKCC	GRCh37	11	108151894	108151894	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	101	293	0	ENST00000278616.4:c.3575A>G	p.Lys1192Arg	p.K1192R	ENST00000278616	NM_000051.3	1192	aAg/aGg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343871	118343871	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	44	503	0	ENST00000534358.1:c.1997G>T	p.Gly666Val	p.G666V	ENST00000534358	NM_005933.3	666	gGt/gTt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118348835	118348835	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	66	309	0	ENST00000534358.1:c.3488T>C	p.Val1163Ala	p.V1163A	ENST00000534358	NM_005933.3	1163	gTg/gCg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118366606	118366606	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	82	324	1	ENST00000534358.1:c.5555T>C	p.Leu1852Ser	p.L1852S	ENST00000534358	NM_005933.3	1852	tTg/tCg																																																																															
CBL	867	MSKCC	GRCh37	11	119146721	119146721	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	30	536	0	ENST00000264033.4:c.884T>C	p.Leu295Pro	p.L295P	ENST00000264033	NM_005188.3	295	cTg/cCg																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125503194	125503194	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	58	405	0	ENST00000428830.2:c.561A>C	p.Glu187Asp	p.E187D	ENST00000428830	NM_001114121.2	187	gaA/gaC																																																																															
KDM5A	5927	MSKCC	GRCh37	12	401925	401925	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	22	349	0	ENST00000399788.2:c.4866G>T	p.Lys1622Asn	p.K1622N	ENST00000399788	NM_001042603.1	1622	aaG/aaT																																																																															
KDM5A	5927	MSKCC	GRCh37	12	402086	402086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	107	599	0	ENST00000399788.2:c.4705G>A	p.Ala1569Thr	p.A1569T	ENST00000399788	NM_001042603.1	1569	Gct/Act																																																																															
KDM5A	5927	MSKCC	GRCh37	12	406317	406318	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	37	497	0	ENST00000399788.2:c.4123dup	p.Cys1375LeufsTer2	p.C1375Lfs*2	ENST00000399788	NM_001042603.1	1375	tgt/tTgt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	432317	432317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	33	406	2	ENST00000399788.2:c.2206G>A	p.Ala736Thr	p.A736T	ENST00000399788	NM_001042603.1	736	Gca/Aca																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022447	12022447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	50	806	2	ENST00000396373.4:c.553C>T	p.Pro185Ser	p.P185S	ENST00000396373	NM_001987.4	185	Cct/Tct																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435238	18435238	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	60	323	1	ENST00000266497.5:c.223G>T	p.Gly75Trp	p.G75W	ENST00000266497		75	Ggg/Tgg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18524149	18524149	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	87	449	0	ENST00000266497.5:c.1661G>T	p.Arg554Met	p.R554M	ENST00000266497		554	aGg/aTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18534753	18534753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	83	434	0	ENST00000266497.5:c.1811C>T	p.Pro604Leu	p.P604L	ENST00000266497		604	cCc/cTc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18650580	18650580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	27	523	0	ENST00000266497.5:c.2791C>T	p.Leu931Phe	p.L931F	ENST00000266497		931	Ctt/Ttt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21630876	21630876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	43	522	0	ENST00000421138.2:c.728G>A	p.Arg243Gln	p.R243Q	ENST00000421138		243	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25368455	25368455	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs200186819		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	102	418	0	ENST00000256078.4:c.490C>T	p.Arg164Ter	p.R164*	ENST00000256078	NM_033360.2	164	Cga/Tga																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945049	31945049	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	153	711	0	ENST00000340398.3:c.52del	p.Arg18AlafsTer19	p.R18Afs*19	ENST00000340398	NM_001013699.2	18	Cgc/gc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244773	46244773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	59	598	0	ENST00000334344.6:c.2867C>T	p.Ala956Val	p.A956V	ENST00000334344	NM_152641.2	956	gCt/gTt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285701	46285701	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	75	403	0	ENST00000334344.6:c.5061G>T	p.Gln1687His	p.Q1687H	ENST00000334344	NM_152641.2	1687	caG/caT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49418727	49418727	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	122	361	0	ENST00000301067.7:c.15787G>A	p.Val5263Met	p.V5263M	ENST00000301067	NM_003482.3	5263	Gtg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420528	49420528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	37	648	1	ENST00000301067.7:c.15221G>A	p.Gly5074Asp	p.G5074D	ENST00000301067	NM_003482.3	5074	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420748	49420748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	35	572	0	ENST00000301067.7:c.15001G>T	p.Gly5001Trp	p.G5001W	ENST00000301067	NM_003482.3	5001	Ggg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433554	49433554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	192	960	0	ENST00000301067.7:c.7999C>A	p.Pro2667Thr	p.P2667T	ENST00000301067	NM_003482.3	2667	Cca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434849	49434849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	208	824	2	ENST00000301067.7:c.6704G>A	p.Arg2235Lys	p.R2235K	ENST00000301067	NM_003482.3	2235	aGa/aAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435032	49435032	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	23	462	0	ENST00000301067.7:c.6521A>G	p.Gln2174Arg	p.Q2174R	ENST00000301067	NM_003482.3	2174	cAg/cGg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56493968	56493968	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	138	538	0	ENST00000267101.3:c.3140T>G	p.Leu1047Arg	p.L1047R	ENST00000267101	NM_001982.3	1047	cTt/cGt																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112915695	112915695	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	34	482	0	ENST00000351677.2:c.968C>A	p.Pro323His	p.P323H	ENST00000351677	NM_002834.3	323	cCc/cAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112017	115112017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	109	636	2	ENST00000257566.3:c.1723G>A	p.Ala575Thr	p.A575T	ENST00000257566	NM_016569.3	575	Gcg/Acg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112326	115112326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	45	214	0	ENST00000257566.3:c.1414G>A	p.Ala472Thr	p.A472T	ENST00000257566	NM_016569.3	472	Gcg/Acg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416574	121416574	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	33	497	1	ENST00000257555.6:c.3G>T	p.Met1?	p.M1?	ENST00000257555		1	atG/atT																																																																															
SETD8	387893	MSKCC	GRCh37	12	123868748	123868748	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	30	602	0	ENST00000330479.4:c.3G>T	p.Met1?	p.M1?	ENST00000330479	NM_020382.3	1	atG/atT																																																																															
POLE	5426	MSKCC	GRCh37	12	133210855	133210855	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	156	733	0	ENST00000320574.5:c.5921A>G	p.Asp1974Gly	p.D1974G	ENST00000320574	NM_006231.2	1974	gAt/gGt																																																																															
POLE	5426	MSKCC	GRCh37	12	133214612	133214612	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	88	423	0	ENST00000320574.5:c.5666A>G	p.Tyr1889Cys	p.Y1889C	ENST00000320574	NM_006231.2	1889	tAc/tGc																																																																															
POLE	5426	MSKCC	GRCh37	12	133215886	133215886	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	18	356	0	ENST00000320574.5:c.5379-2A>G		p.X1793_splice	ENST00000320574	NM_006231.2	1793																																																																																
POLE	5426	MSKCC	GRCh37	12	133219579	133219579	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs542430685		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	69	422	2	ENST00000320574.5:c.4555C>T	p.Arg1519Cys	p.R1519C	ENST00000320574	NM_006231.2	1519	Cgc/Tgc																																																																															
POLE	5426	MSKCC	GRCh37	12	133226035	133226035	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200398117		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	96	624	1	ENST00000320574.5:c.3862G>A	p.Ala1288Thr	p.A1288T	ENST00000320574	NM_006231.2	1288	Gcc/Acc																																																																															
POLE	5426	MSKCC	GRCh37	12	133236097	133236097	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	18	338	0	ENST00000320574.5:c.3061-2A>G		p.X1021_splice	ENST00000320574	NM_006231.2	1021																																																																																
POLE	5426	MSKCC	GRCh37	12	133238237	133238237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	89	426	0	ENST00000320574.5:c.2740G>A	p.Ala914Thr	p.A914T	ENST00000320574	NM_006231.2	914	Gct/Act																																																																															
POLE	5426	MSKCC	GRCh37	12	133240730	133240730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	132	564	0	ENST00000320574.5:c.2566C>T	p.Pro856Ser	p.P856S	ENST00000320574	NM_006231.2	856	Ccc/Tcc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21555788	21555788	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	41	548	0	ENST00000382592.4:c.2483-1G>A		p.X828_splice	ENST00000382592	NM_014572.2	828																																																																																
LATS2	26524	MSKCC	GRCh37	13	21562215	21562215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	188	906	1	ENST00000382592.4:c.1704G>T	p.Lys568Asn	p.K568N	ENST00000382592	NM_014572.2	568	aaG/aaT																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562789	21562789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	120	594	1	ENST00000382592.4:c.1130G>A	p.Arg377His	p.R377H	ENST00000382592	NM_014572.2	377	cGc/cAc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26978093	26978093	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	114	565	4	ENST00000381527.3:c.1270C>T	p.Arg424Cys	p.R424C	ENST00000381527	NM_001260.1	424	Cgt/Tgt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589320	28589320	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	74	424	0	ENST00000241453.7:c.2727T>A	p.Asp909Glu	p.D909E	ENST00000241453	NM_004119.2	909	gaT/gaA																																																																															
FLT3	2322	MSKCC	GRCh37	13	28610143	28610143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	123	453	0	ENST00000241453.7:c.1347G>T	p.Gln449His	p.Q449H	ENST00000241453	NM_004119.2	449	caG/caT																																																																															
FLT1	2321	MSKCC	GRCh37	13	28896975	28896975	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	135	536	0	ENST00000282397.4:c.2905T>C	p.Ser969Pro	p.S969P	ENST00000282397	NM_002019.4	969	Tcc/Ccc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964143	28964143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766569666		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	85	514	0	ENST00000282397.4:c.1759G>A	p.Val587Ile	p.V587I	ENST00000282397	NM_002019.4	587	Gtt/Att																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914994	32914994	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	63	483	0	ENST00000380152.3:c.6502G>T	p.Gly2168Ter	p.G2168*	ENST00000380152		2168	Gga/Tga																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133787	41133787	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	67	366	0	ENST00000379561.5:c.1841T>C	p.Met614Thr	p.M614T	ENST00000379561	NM_002015.3	614	aTg/aCg																																																																															
RB1	5925	MSKCC	GRCh37	13	48953751	48953751	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	91	268	0	ENST00000267163.4:c.1354T>A	p.Leu452Met	p.L452M	ENST00000267163	NM_000321.2	452	Ttg/Atg																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281278	49281278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	35	798	0	ENST00000282018.3:c.325C>A	p.Leu109Met	p.L109M	ENST00000282018	NM_020377.2	109	Ctg/Atg																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281701	49281701	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	44	853	0	ENST00000282018.3:c.748A>G	p.Ile250Val	p.I250V	ENST00000282018	NM_020377.2	250	Atc/Gtc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518082	103518082	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	36	253	0	ENST00000355739.4:c.2020T>C	p.Ser674Pro	p.S674P	ENST00000355739	NM_000123.3	674	Tcc/Ccc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435135	110435135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	35	684	0	ENST00000375856.3:c.3266C>T	p.Ala1089Val	p.A1089V	ENST00000375856	NM_003749.2	1089	gCc/gTc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068315	30068315	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141649026		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	86	328	0	ENST00000331968.5:c.2084G>A	p.Arg695Gln	p.R695Q	ENST00000331968	NM_002742.2	695	cGg/cAg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068902	30068902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	110	742	1	ENST00000331968.5:c.2027G>A	p.Gly676Asp	p.G676D	ENST00000331968	NM_002742.2	676	gGc/gAc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396469	30396469	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	76	394	0	ENST00000331968.5:c.250A>G	p.Ile84Val	p.I84V	ENST00000331968	NM_002742.2	84	Att/Gtt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061474	38061474	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	101	495	0	ENST00000250448.2:c.515C>A	p.Pro172His	p.P172H	ENST00000250448	NM_004496.3	172	cCc/cAc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610483	81610483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	26	391	0	ENST00000298171.2:c.2081G>A	p.Ser694Asn	p.S694N	ENST00000298171	NM_000369.2	694	aGc/aAc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570006	95570006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	91	547	0	ENST00000343455.3:c.3727C>T	p.Leu1243Phe	p.L1243F	ENST00000343455	NM_177438.2	1243	Ctt/Ttt																																																																															
AKT1	207	MSKCC	GRCh37	14	105241276	105241276	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	35	648	0	ENST00000349310.3:c.632C>T	p.Thr211Ile	p.T211I	ENST00000349310	NM_001014432.1	211	aCa/aTa																																																																															
MGA	23269	MSKCC	GRCh37	15	41991125	41991125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	37	570	0	ENST00000219905.7:c.2078C>T	p.Thr693Ile	p.T693I	ENST00000219905	NM_001164273.1	693	aCc/aTc																																																																															
MGA	23269	MSKCC	GRCh37	15	42003228	42003228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	112	633	1	ENST00000219905.7:c.2765C>A	p.Pro922His	p.P922H	ENST00000219905	NM_001164273.1	922	cCt/cAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42019595	42019596	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	71	436	0	ENST00000219905.7:c.3650dup	p.Asn1217LysfsTer17	p.N1217Kfs*17	ENST00000219905	NM_001164273.1	1216	-/A																																																																															
MGA	23269	MSKCC	GRCh37	15	42032257	42032257	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	34	591	0	ENST00000219905.7:c.4441T>C	p.Ser1481Pro	p.S1481P	ENST00000219905	NM_001164273.1	1481	Tcc/Ccc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712701	43712701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	130	769	3	ENST00000382044.4:c.4483C>T	p.Arg1495Cys	p.R1495C	ENST00000382044	NM_001141980.1	1495	Cgt/Tgt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749040	43749040	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	245	922	0	ENST00000382044.4:c.1766A>T	p.Asp589Val	p.D589V	ENST00000382044	NM_001141980.1	589	gAc/gTc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749099	43749100	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	152	858	0	ENST00000382044.4:c.1706dup	p.Asn569LysfsTer2	p.N569Kfs*2	ENST00000382044	NM_001141980.1	569	aat/aaAt																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66781568	66781568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	125	604	1	ENST00000307102.5:c.976C>T	p.Pro326Ser	p.P326S	ENST00000307102	NM_002755.3	326	Ccc/Tcc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457274	67457274	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	103	641	2	ENST00000327367.4:c.248T>C	p.Leu83Pro	p.L83P	ENST00000327367	NM_005902.3	83	cTc/cCc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88690581	88690581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	24	352	0	ENST00000360948.2:c.449T>C	p.Leu150Pro	p.L150P	ENST00000360948	NM_001012338.2	150	cTg/cCg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727513	88727513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374069724		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	32	457	0	ENST00000360948.2:c.266G>A	p.Arg89His	p.R89H	ENST00000360948	NM_001012338.2	89	cGc/cAc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628112	90628112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	44	746	1	ENST00000330062.3:c.1207G>A	p.Val403Met	p.V403M	ENST00000330062	NM_002168.2	403	Gtg/Atg																																																																															
BLM	641	MSKCC	GRCh37	15	91303410	91303410	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	96	376	0	ENST00000355112.3:c.1121A>G	p.His374Arg	p.H374R	ENST00000355112	NM_000057.2	374	cAt/cGt																																																																															
BLM	641	MSKCC	GRCh37	15	91304000	91304000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	124	655	0	ENST00000355112.3:c.1397G>T	p.Gly466Val	p.G466V	ENST00000355112	NM_000057.2	466	gGg/gTg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99192878	99192878	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	83	317	0	ENST00000268035.6:c.68T>C	p.Leu23Pro	p.L23P	ENST00000268035	NM_000875.3	23	cTc/cCc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99451944	99451944	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	29	335	1	ENST00000268035.6:c.1278G>T	p.Gln426His	p.Q426H	ENST00000268035	NM_000875.3	426	caG/caT																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465471	99465471	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	25	412	0	ENST00000268035.6:c.2296A>C	p.Thr766Pro	p.T766P	ENST00000268035	NM_000875.3	766	Acc/Ccc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467227	99467227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	16	288	0	ENST00000268035.6:c.2608G>A	p.Gly870Arg	p.G870R	ENST00000268035	NM_000875.3	870	Gga/Aga																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347078	347078	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	49	758	0	ENST00000262320.3:c.1933A>G	p.Arg645Gly	p.R645G	ENST00000262320	NM_003502.3	645	Agg/Ggg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396466	396466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	41	872	0	ENST00000262320.3:c.560C>T	p.Thr187Ile	p.T187I	ENST00000262320	NM_003502.3	187	aCc/aTc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2106687	2106687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	156	737	0	ENST00000219476.3:c.691C>A	p.Leu231Met	p.L231M	ENST00000219476	NM_000548.3	231	Ctg/Atg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2108863	2108863	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	34	689	0	ENST00000219476.3:c.964T>C	p.Ser322Pro	p.S322P	ENST00000219476	NM_000548.3	322	Tca/Cca																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136258	2136258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	111	588	0	ENST00000219476.3:c.4727C>T	p.Thr1576Met	p.T1576M	ENST00000219476	NM_000548.3	1576	aCg/aTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138532	2138532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	44	643	1	ENST00000219476.3:c.5345C>T	p.Ala1782Val	p.A1782V	ENST00000219476	NM_000548.3	1782	gCc/gTc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2213947	2213947	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	161	605	0	ENST00000326181.6:c.26A>G	p.Tyr9Cys	p.Y9C	ENST00000326181	NM_032271.2	9	tAc/tGc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223834	2223834	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	136	880	0	ENST00000326181.6:c.1132G>T	p.Gly378Cys	p.G378C	ENST00000326181	NM_032271.2	378	Ggc/Tgc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3642800	3642800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	136	653	0	ENST00000294008.3:c.2227G>A	p.Val743Met	p.V743M	ENST00000294008	NM_032444.2	743	Gtg/Atg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807966	3807966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	37	635	0	ENST00000262367.5:c.3453G>T	p.Trp1151Cys	p.W1151C	ENST00000262367	NM_004380.2	1151	tgG/tgT																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3828051	3828051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	46	597	0	ENST00000262367.5:c.2074C>T	p.Pro692Ser	p.P692S	ENST00000262367	NM_004380.2	692	Ccc/Tcc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3831226	3831226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	168	450	0	ENST00000262367.5:c.1655C>T	p.Pro552Leu	p.P552L	ENST00000262367	NM_004380.2	552	cCg/cTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858417	9858417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	82	509	0	ENST00000330684.3:c.2984C>T	p.Thr995Met	p.T995M	ENST00000330684	NM_001134407.1	995	aCg/aTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862922	9862922	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	95	568	0	ENST00000330684.3:c.2381T>C	p.Leu794Pro	p.L794P	ENST00000330684	NM_001134407.1	794	cTg/cCg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892161	9892161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	25	473	0	ENST00000330684.3:c.2329C>A	p.Leu777Met	p.L777M	ENST00000330684	NM_001134407.1	777	Ctg/Atg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934854	9934854	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	119	608	0	ENST00000330684.3:c.1436T>C	p.Leu479Pro	p.L479P	ENST00000330684	NM_001134407.1	479	cTg/cCg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943787	9943787	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	86	446	1	ENST00000330684.3:c.1154T>C	p.Leu385Pro	p.L385P	ENST00000330684	NM_001134407.1	385	cTg/cCg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031919	10031919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	132	607	1	ENST00000330684.3:c.904G>A	p.Ala302Thr	p.A302T	ENST00000330684	NM_001134407.1	302	Gct/Act																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30128989	30128989	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	86	477	0	ENST00000263025.4:c.775+2T>C		p.X259_splice	ENST00000263025	NM_002746.2	259																																																																																
NUP93	9688	MSKCC	GRCh37	16	56867184	56867184	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	34	624	0	ENST00000308159.5:c.1403T>C	p.Leu468Pro	p.L468P	ENST00000308159	NM_014669.4	468	cTg/cCg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	77	355	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
CTCF	10664	MSKCC	GRCh37	16	67663337	67663337	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	80	410	0	ENST00000264010.4:c.1738C>A	p.Pro580Thr	p.P580T	ENST00000264010	NM_006565.3	580	Cca/Aca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991503	72991503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	153	778	1	ENST00000268489.5:c.2542C>A	p.Leu848Met	p.L848M	ENST00000268489	NM_006885.3	848	Ctg/Atg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942115	81942115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	33	549	0	ENST00000359376.3:c.1652G>A	p.Cys551Tyr	p.C551Y	ENST00000359376	NM_002661.3	551	tGc/tAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347627	89347627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	84	578	0	ENST00000301030.4:c.5323G>A	p.Ala1775Thr	p.A1775T	ENST00000301030	NM_001256183.1	1775	Gcc/Acc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89858914	89858914	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150290184		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	139	547	1	ENST00000389301.3:c.1048C>T	p.Arg350Trp	p.R350W	ENST00000389301	NM_000135.2	350	Cgg/Tgg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11958286	11958286	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	64	379	0	ENST00000353533.5:c.196A>C	p.Thr66Pro	p.T66P	ENST00000353533	NM_003010.3	66	Aca/Cca																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028685	12028686	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	32	389	0	ENST00000353533.5:c.890dup	p.Leu297PhefsTer3	p.L297Ffs*3	ENST00000353533	NM_003010.3	296	-/T																																																																															
FLCN	201163	MSKCC	GRCh37	17	17125975	17125975	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	83	415	0	ENST00000285071.4:c.619G>A	p.Val207Met	p.V207M	ENST00000285071	NM_144997.5	207	Gtg/Atg																																																																															
NF1	4763	MSKCC	GRCh37	17	29652959	29652959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	95	497	0	ENST00000358273.4:c.4957C>T	p.Arg1653Cys	p.R1653C	ENST00000358273	NM_001042492.2	1653	Cgc/Tgc																																																																															
NF1	4763	MSKCC	GRCh37	17	29653115	29653115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	28	364	0	ENST00000358273.4:c.5113A>G	p.Arg1705Gly	p.R1705G	ENST00000358273	NM_001042492.2	1705	Agg/Ggg																																																																															
NF1	4763	MSKCC	GRCh37	17	29667663	29667663	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	25	433	0	ENST00000358273.4:c.7062G>T	p.Lys2354Asn	p.K2354N	ENST00000358273	NM_001042492.2	2354	aaG/aaT																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627811	37627811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	133	677	0	ENST00000447079.4:c.1726G>A	p.Val576Ile	p.V576I	ENST00000447079	NM_015083.1	576	Gtt/Att																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682211	37682211	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	113	540	0	ENST00000447079.4:c.3402G>T	p.Met1134Ile	p.M1134I	ENST00000447079	NM_015083.1	1134	atG/atT																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682349	37682349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	93	580	0	ENST00000447079.4:c.3540G>T	p.Lys1180Asn	p.K1180N	ENST00000447079	NM_015083.1	1180	aaG/aaT																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	56	665	2	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370244	40370244	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	111	699	1	ENST00000293328.3:c.1094A>C	p.Asn365Thr	p.N365T	ENST00000293328	NM_012448.3	365	aAc/aCc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40375562	40375562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	89	486	0	ENST00000293328.3:c.388G>A	p.Ala130Thr	p.A130T	ENST00000293328	NM_012448.3	130	Gct/Act																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805918	46805918	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	83	318	0	ENST00000290295.7:c.38A>G	p.Lys13Arg	p.K13R	ENST00000290295	NM_006361.5	13	aAg/aGg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696602	47696602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	79	460	0	ENST00000347630.2:c.346G>T	p.Ala116Ser	p.A116S	ENST00000347630	NM_001007230.1	116	Gct/Tct																																																																															
RNF43	54894	MSKCC	GRCh37	17	56432348	56432348	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	86	360	0	ENST00000407977.2:c.2309-1G>T		p.X770_splice	ENST00000407977		770																																																																																
PPM1D	8493	MSKCC	GRCh37	17	58677917	58677917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	63	339	0	ENST00000305921.3:c.142C>T	p.Pro48Ser	p.P48S	ENST00000305921	NM_003620.3	48	Ccg/Tcg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740542	58740542	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	46	550	0	ENST00000305921.3:c.1447A>G	p.Thr483Ala	p.T483A	ENST00000305921	NM_003620.3	483	Act/Gct																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740809	58740809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	193	437	0	ENST00000305921.3:c.1714C>T	p.Arg572Ter	p.R572*	ENST00000305921	NM_003620.3	572	Cga/Tga																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761130	59761130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	94	634	0	ENST00000259008.2:c.3277C>A	p.Leu1093Ile	p.L1093I	ENST00000259008	NM_032043.2	1093	Ctc/Atc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59853773	59853773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	56	360	0	ENST00000259008.2:c.2086C>T	p.Pro696Ser	p.P696S	ENST00000259008	NM_032043.2	696	Cca/Tca																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59885827	59885827	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	37	370	0	ENST00000259008.2:c.918+1G>A		p.X306_splice	ENST00000259008	NM_032043.2	306																																																																																
PRKAR1A	5573	MSKCC	GRCh37	17	66518934	66518934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	72	305	1	ENST00000358598.2:c.215G>A	p.Gly72Asp	p.G72D	ENST00000358598	NM_212471.2	72	gGc/gAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117918	70117918	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	88	369	0	ENST00000245479.2:c.386A>G	p.His129Arg	p.H129R	ENST00000245479	NM_000346.3	129	cAc/cGc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78829307	78829307	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	143	622	0	ENST00000306801.3:c.1358T>A	p.Leu453His	p.L453H	ENST00000306801	NM_020761.2	453	cTt/cAt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78857650	78857650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	107	663	1	ENST00000306801.3:c.1720C>T	p.Arg574Cys	p.R574C	ENST00000306801	NM_020761.2	574	Cgc/Tgc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78857725	78857725	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	99	635	0	ENST00000306801.3:c.1795A>G	p.Ser599Gly	p.S599G	ENST00000306801	NM_020761.2	599	Agc/Ggc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604661	48604661	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	23	350	0	ENST00000342988.3:c.1483C>A	p.Leu495Ile	p.L495I	ENST00000342988	NM_005359.5	495	Ctt/Att																																																																															
BCL2	596	MSKCC	GRCh37	18	60795959	60795959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	96	430	0	ENST00000333681.4:c.619C>T	p.Arg207Trp	p.R207W	ENST00000333681		207	Cgg/Tgg																																																																															
STK11	6794	MSKCC	GRCh37	19	1226569	1226569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	46	565	0	ENST00000326873.7:c.1225C>T	p.Arg409Trp	p.R409W	ENST00000326873	NM_000455.4	409	Cgg/Tgg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622318	1622318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	111	694	1	ENST00000344749.5:c.646G>A	p.Val216Met	p.V216M	ENST00000344749	NM_001136139.2	216	Gtg/Atg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217048	2217048	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	115	651	1	ENST00000398665.3:c.2503C>A	p.Pro835Thr	p.P835T	ENST00000398665	NM_032482.2	835	Cct/Act																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226323	2226323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	180	886	1	ENST00000398665.3:c.3803G>A	p.Ser1268Asn	p.S1268N	ENST00000398665	NM_032482.2	1268	aGc/aAc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226704	2226704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	131	677	0	ENST00000398665.3:c.4184C>T	p.Pro1395Leu	p.P1395L	ENST00000398665	NM_032482.2	1395	cCg/cTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226883	2226883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	19	282	1	ENST00000398665.3:c.4363G>A	p.Ala1455Thr	p.A1455T	ENST00000398665	NM_032482.2	1455	Gcg/Acg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4110554	4110554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	125	610	0	ENST00000262948.5:c.403G>T	p.Gly135Trp	p.G135W	ENST00000262948	NM_030662.3	135	Ggg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210778	5210778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	121	675	1	ENST00000357368.4:c.5273C>T	p.Ala1758Val	p.A1758V	ENST00000357368	NM_002850.3	1758	gCg/gTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212242	5212242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	112	563	0	ENST00000357368.4:c.4789G>T	p.Gly1597Cys	p.G1597C	ENST00000357368	NM_002850.3	1597	Ggc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220117	5220117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	125	510	0	ENST00000357368.4:c.3598C>T	p.Arg1200Cys	p.R1200C	ENST00000357368	NM_002850.3	1200	Cgt/Tgt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245891	5245891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	152	836	1	ENST00000357368.4:c.884G>A	p.Arg295Gln	p.R295Q	ENST00000357368	NM_002850.3	295	cGg/cAg																																																																															
INSR	3643	MSKCC	GRCh37	19	7120676	7120676	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	132	709	0	ENST00000302850.5:c.3614C>A	p.Pro1205Gln	p.P1205Q	ENST00000302850	NM_000208.2	1205	cCg/cAg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10254557	10254557	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	118	628	0	ENST00000340748.4:c.2953C>A	p.Leu985Met	p.L985M	ENST00000340748		985	Ctg/Atg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262088	10262088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	46	657	1	ENST00000340748.4:c.2203G>A	p.Gly735Arg	p.G735R	ENST00000340748		735	Gga/Aga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599907	10599907	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	45	667	0	ENST00000171111.5:c.1669C>A	p.Leu557Met	p.L557M	ENST00000171111	NM_203500.1	557	Ctg/Atg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600479	10600479	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145311080		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	132	625	1	ENST00000171111.5:c.1376G>A	p.Arg459Gln	p.R459Q	ENST00000171111	NM_203500.1	459	cGa/cAa																																																																															
CARM1	10498	MSKCC	GRCh37	19	11022965	11022965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	117	580	0	ENST00000327064.4:c.664G>A	p.Ala222Thr	p.A222T	ENST00000327064	NM_199141.1	222	Gct/Act																																																																															
CALR	811	MSKCC	GRCh37	19	13049552	13049552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	117	744	0	ENST00000316448.5:c.59C>T	p.Ala20Val	p.A20V	ENST00000316448	NM_004343.3	20	gCc/gTc																																																																															
CALR	811	MSKCC	GRCh37	19	13051105	13051105	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	41	442	0	ENST00000316448.5:c.541A>G	p.Thr181Ala	p.T181A	ENST00000316448	NM_004343.3	181	Acc/Gcc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289723	15289723	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	153	742	3	ENST00000263388.2:c.3748T>C	p.Cys1250Arg	p.C1250R	ENST00000263388	NM_000435.2	1250	Tgc/Cgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15300082	15300082	+	splice_donor_variant	Splice_Site	SNP	A	A	G	rs112788166		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	74	578	0	ENST00000263388.2:c.1192+2T>C		p.X398_splice	ENST00000263388	NM_000435.2	398																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15303224	15303224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	160	814	1	ENST00000263388.2:c.304G>A	p.Ala102Thr	p.A102T	ENST00000263388	NM_000435.2	102	Gcc/Acc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965815	18965815	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	97	573	0	ENST00000262803.5:c.1393G>T	p.Ala465Ser	p.A465S	ENST00000262803	NM_002911.3	465	Gcg/Tcg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18974297	18974297	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	96	549	0	ENST00000262803.5:c.2651T>C	p.Leu884Pro	p.L884P	ENST00000262803	NM_002911.3	884	cTc/cCc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19258587	19258587	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	56	794	1	ENST00000162023.5:c.313G>T	p.Gly105Trp	p.G105W	ENST00000162023		105	Ggg/Tgg																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792794	33792794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	44	158	0	ENST00000498907.2:c.527C>T	p.Ala176Val	p.A176V	ENST00000498907	NM_004364.3	176	gCc/gTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218066	36218066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	84	357	0	ENST00000222270.7:c.4013G>A	p.Cys1338Tyr	p.C1338Y	ENST00000222270	NM_014727.1	1338	tGc/tAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219002	36219002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	126	612	0	ENST00000222270.7:c.4501C>A	p.Leu1501Ile	p.L1501I	ENST00000222270	NM_014727.1	1501	Cta/Ata																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222925	36222925	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746346674		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	172	929	2	ENST00000222270.7:c.5554G>A	p.Ala1852Thr	p.A1852T	ENST00000222270	NM_014727.1	1852	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223562	36223562	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	108	902	0	ENST00000222270.7:c.6112C>A	p.Pro2038Thr	p.P2038T	ENST00000222270	NM_014727.1	2038	Cct/Act																																																																															
AXL	558	MSKCC	GRCh37	19	41754720	41754720	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	178	557	0	ENST00000301178.4:c.1706T>C	p.Met569Thr	p.M569T	ENST00000301178	NM_021913.4	569	aTg/aCg																																																																															
CIC	23152	MSKCC	GRCh37	19	42791393	42791393	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	115	677	1	ENST00000575354.2:c.452+1G>A		p.X151_splice	ENST00000575354	NM_015125.3	151																																																																																
CIC	23152	MSKCC	GRCh37	19	42795620	42795620	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	50	776	0	ENST00000575354.2:c.2698+2T>C		p.X900_splice	ENST00000575354	NM_015125.3	900																																																																																
CIC	23152	MSKCC	GRCh37	19	42797278	42797278	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs968289754		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	175	672	0	ENST00000575354.2:c.3640C>T	p.Arg1214Ter	p.R1214*	ENST00000575354	NM_015125.3	1214	Cga/Tga																																																																															
POLD1	5424	MSKCC	GRCh37	19	50917108	50917108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	136	838	0	ENST00000440232.2:c.2360C>A	p.Pro787Gln	p.P787Q	ENST00000440232	NM_002691.3	787	cCg/cAg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918759	50918759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	201	730	0	ENST00000440232.2:c.2629G>A	p.Asp877Asn	p.D877N	ENST00000440232	NM_002691.3	877	Gat/Aat																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919734	50919734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	145	709	0	ENST00000440232.2:c.2902C>T	p.Arg968Cys	p.R968C	ENST00000440232	NM_002691.3	968	Cgc/Tgc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52709291	52709291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	76	477	0	ENST00000322088.6:c.245G>A	p.Gly82Asp	p.G82D	ENST00000322088	NM_014225.5	82	gGc/gAc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464483	25464483	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	106	551	0	ENST00000264709.3:c.2030A>G	p.His677Arg	p.H677R	ENST00000264709	NM_175629.2	677	cAc/cGc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469540	25469540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	113	700	0	ENST00000264709.3:c.1228G>A	p.Ala410Thr	p.A410T	ENST00000264709	NM_175629.2	410	Gcc/Acc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523052	25523052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	43	677	0	ENST00000264709.3:c.133G>A	p.Ala45Thr	p.A45T	ENST00000264709	NM_175629.2	45	Gca/Aca																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982389	25982389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	70	375	0	ENST00000435504.4:c.901C>T	p.Gln301Ter	p.Q301*	ENST00000435504		301	Caa/Taa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26029183	26029183	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	27	404	0	ENST00000435504.4:c.167T>C	p.Leu56Pro	p.L56P	ENST00000435504		56	cTg/cCg																																																																															
ALK	238	MSKCC	GRCh37	2	29416406	29416406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	224	803	0	ENST00000389048.3:c.4547C>T	p.Thr1516Ile	p.T1516I	ENST00000389048	NM_004304.4	1516	aCc/aTc																																																																															
ALK	238	MSKCC	GRCh37	2	29443655	29443655	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	27	621	3	ENST00000389048.3:c.3562C>T	p.Gln1188Ter	p.Q1188*	ENST00000389048	NM_004304.4	1188	Caa/Taa																																																																															
ALK	238	MSKCC	GRCh37	2	30143421	30143421	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	26	452	0	ENST00000389048.3:c.105del	p.Pro36ArgfsTer45	p.P36Rfs*45	ENST00000389048	NM_004304.4	35	ggG/gg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607420	46607420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	119	735	2	ENST00000263734.3:c.1609G>A	p.Gly537Arg	p.G537R	ENST00000263734	NM_001430.4	537	Ggg/Agg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61709561	61709561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	34	402	0	ENST00000401558.2:c.2926G>A	p.Glu976Lys	p.E976K	ENST00000401558	NM_003400.3	976	Gaa/Aaa																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96930969	96930969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	174	554	0	ENST00000258439.3:c.151C>T	p.Pro51Ser	p.P51S	ENST00000258439	NM_001193304.2	51	Ccc/Tcc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128016984	128016984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	110	555	2	ENST00000285398.2:c.2105C>T	p.Ala702Val	p.A702V	ENST00000285398	NM_000122.1	702	gCg/gTg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128017001	128017001	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	101	542	0	ENST00000285398.2:c.2088G>T	p.Met696Ile	p.M696I	ENST00000285398	NM_000122.1	696	atG/atT																																																																															
ACVR1	90	MSKCC	GRCh37	2	158622571	158622571	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	124	546	1	ENST00000263640.3:c.928C>A	p.Leu310Met	p.L310M	ENST00000263640	NM_001105.4	310	Ctg/Atg																																																																															
ACVR1	90	MSKCC	GRCh37	2	158634710	158634710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	104	381	0	ENST00000263640.3:c.476C>A	p.Pro159His	p.P159H	ENST00000263640	NM_001105.4	159	cCc/cAc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098061	178098061	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	76	309	0	ENST00000397062.3:c.319C>A	p.His107Asn	p.H107N	ENST00000397062	NM_006164.4	107	Cac/Aac																																																																															
CASP8	841	MSKCC	GRCh37	2	202131282	202131282	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	25	453	1	ENST00000358485.4:c.250C>A	p.Leu84Met	p.L84M	ENST00000358485	NM_001080125.1	84	Ctg/Atg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913500		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	72	308	1	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285224	212285224	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	43	496	1	ENST00000342788.4:c.3077A>G	p.Gln1026Arg	p.Q1026R	ENST00000342788	NM_005235.2	1026	cAg/cGg																																																																															
BARD1	580	MSKCC	GRCh37	2	215610551	215610551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	84	468	0	ENST00000260947.4:c.1705C>T	p.Pro569Ser	p.P569S	ENST00000260947	NM_000465.2	569	Cct/Tct																																																																															
INHA	3623	MSKCC	GRCh37	2	220439518	220439518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	117	647	0	ENST00000243786.2:c.371G>T	p.Arg124Leu	p.R124L	ENST00000243786	NM_002191.3	124	cGc/cTc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225368487	225368487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	32	471	0	ENST00000264414.4:c.1259G>T	p.Arg420Met	p.R420M	ENST00000264414	NM_003590.4	420	aGg/aTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662521	227662521	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	52	492	0	ENST00000305123.5:c.934T>C	p.Ser312Pro	p.S312P	ENST00000305123	NM_005544.2	312	Tcc/Ccc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561289	9561289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	85	496	1	ENST00000353224.5:c.493G>A	p.Ala165Thr	p.A165T	ENST00000353224	NM_177990.2	165	Gca/Aca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40979293	40979293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	58	582	1	ENST00000373198.4:c.1840G>A	p.Ala614Thr	p.A614T	ENST00000373198	NM_133170.3	614	Gct/Act																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306793	41306793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	21	290	0	ENST00000373198.4:c.866C>T	p.Pro289Leu	p.P289L	ENST00000373198	NM_133170.3	289	cCc/cTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419887	41419887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	120	479	0	ENST00000373198.4:c.434G>T	p.Gly145Val	p.G145V	ENST00000373198	NM_133170.3	145	gGc/gTc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265048	46265049	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	71	495	0	ENST00000371998.3:c.1924dup	p.Leu642ProfsTer6	p.L642Pfs*6	ENST00000371998		640	tcc/tCcc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46277793	46277793	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	29	403	0	ENST00000371998.3:c.3591C>A	p.Asn1197Lys	p.N1197K	ENST00000371998		1197	aaC/aaA																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62303913	62303913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	102	551	2	ENST00000508582.2:c.776G>A	p.Arg259His	p.R259H	ENST00000508582		259	cGc/cAc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44527574	44527574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	67	455	0	ENST00000291552.4:c.31A>G	p.Thr11Ala	p.T11A	ENST00000291552	NM_006758.2	11	Acc/Gcc																																																																															
RAC2	5880	MSKCC	GRCh37	22	37627421	37627421	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	40	674	0	ENST00000249071.6:c.298G>T	p.Glu100Ter	p.E100*	ENST00000249071	NM_002872.4	100	Gaa/Taa																																																																															
EP300	2033	MSKCC	GRCh37	22	41523630	41523630	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	46	657	0	ENST00000263253.7:c.1046A>G	p.His349Arg	p.H349R	ENST00000263253	NM_001429.3	349	cAc/cGc																																																																															
EP300	2033	MSKCC	GRCh37	22	41533739	41533739	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	43	518	0	ENST00000263253.7:c.1705A>G	p.Lys569Glu	p.K569E	ENST00000263253	NM_001429.3	569	Aaa/Gaa																																																																															
EP300	2033	MSKCC	GRCh37	22	41568502	41568502	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	42	357	0	ENST00000263253.7:c.4453-1G>T		p.X1485_splice	ENST00000263253	NM_001429.3	1485																																																																																
EP300	2033	MSKCC	GRCh37	22	41569711	41569711	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	61	285	0	ENST00000263253.7:c.4702A>G	p.Lys1568Glu	p.K1568E	ENST00000263253	NM_001429.3	1568	Aag/Gag																																																																															
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	46	848	5	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																															
RAF1	5894	MSKCC	GRCh37	3	12641700	12641700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	51	534	0	ENST00000251849.4:c.941C>T	p.Ala314Val	p.A314V	ENST00000251849	NM_002880.3	314	gCa/gTa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267350	41267350	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	50	234	0	ENST00000349496.5:c.934A>G	p.Lys312Glu	p.K312E	ENST00000349496	NM_001904.3	312	Aag/Gag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098956	47098957	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	114	552	0	ENST00000409792.3:c.6317dup	p.Lys2107GlufsTer5	p.K2107Efs*5	ENST00000409792	NM_014159.6	2106	aag/aaAg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47127765	47127765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	179	437	0	ENST00000409792.3:c.5317C>T	p.Arg1773Cys	p.R1773C	ENST00000409792	NM_014159.6	1773	Cgt/Tgt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163333	47163333	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	91	449	0	ENST00000409792.3:c.2793A>T	p.Glu931Asp	p.E931D	ENST00000409792	NM_014159.6	931	gaA/gaT																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928639	49928639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	47	657	0	ENST00000296474.3:c.3635G>A	p.Arg1212Gln	p.R1212Q	ENST00000296474	NM_002447.2	1212	cGg/cAg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940064	49940064	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200757776		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	185	648	1	ENST00000296474.3:c.979G>A	p.Ala327Thr	p.A327T	ENST00000296474	NM_002447.2	327	Gct/Act																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436380	52436380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	36	639	0	ENST00000460680.1:c.2114G>A	p.Ser705Asn	p.S705N	ENST00000460680	NM_004656.3	705	aGc/aAc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439792	52439792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	36	542	0	ENST00000460680.1:c.920G>A	p.Gly307Asp	p.G307D	ENST00000460680	NM_004656.3	307	gGc/gAc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643716	52643716	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	39	654	0	ENST00000394830.3:c.2180A>G	p.Asp727Gly	p.D727G	ENST00000394830	NM_018313.4	727	gAc/gGc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799640	72799640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	32	602	1	ENST00000325599.8:c.1529G>A	p.Arg510His	p.R510H	ENST00000325599	NM_018130.2	510	cGc/cAc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72891455	72891455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	40	513	1	ENST00000325599.8:c.307G>A	p.Ala103Thr	p.A103T	ENST00000325599	NM_018130.2	103	Gca/Aca																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73112898	73112898	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	85	370	0	ENST00000356692.5:c.494G>A	p.Arg165Lys	p.R165K	ENST00000356692		165	aGg/aAg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119634966	119634966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	53	231	0	ENST00000316626.5:c.533G>A	p.Cys178Tyr	p.C178Y	ENST00000316626		178	tGc/tAc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204639	128204639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	125	618	0	ENST00000341105.2:c.802G>A	p.Gly268Arg	p.G268R	ENST00000341105	NM_032638.4	268	Gga/Aga																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205017	128205017	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	150	611	0	ENST00000341105.2:c.424C>A	p.Pro142Thr	p.P142T	ENST00000341105	NM_032638.4	142	Cca/Aca																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670774	134670774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	87	433	0	ENST00000398015.3:c.685G>A	p.Ala229Thr	p.A229T	ENST00000398015	NM_004441.4	229	Gca/Aca																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134825361	134825361	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	83	442	0	ENST00000398015.3:c.877T>C	p.Ser293Pro	p.S293P	ENST00000398015	NM_004441.4	293	Tcc/Ccc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134881006	134881006	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	136	450	0	ENST00000398015.3:c.1569C>A	p.Phe523Leu	p.F523L	ENST00000398015	NM_004441.4	523	ttC/ttA																																																																															
ATR	545	MSKCC	GRCh37	3	142272236	142272236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	25	291	0	ENST00000350721.4:c.2638G>A	p.Ala880Thr	p.A880T	ENST00000350721	NM_001184.3	880	Gca/Aca																																																																															
ATR	545	MSKCC	GRCh37	3	142286929	142286929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	150	449	0	ENST00000350721.4:c.127C>T	p.Arg43Trp	p.R43W	ENST00000350721	NM_001184.3	43	Cgg/Tgg																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374825	149374825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	69	367	0	ENST00000360632.3:c.269C>T	p.Ser90Leu	p.S90L	ENST00000360632	NM_015472.4	90	tCg/tTg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169953109	169953109	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	99	503	1	ENST00000295797.4:c.193C>A	p.Leu65Ile	p.L65I	ENST00000295797	NM_002740.5	65	Ctc/Atc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952075	178952075	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	24	375	0	ENST00000263967.3:c.3130A>G	p.Asn1044Asp	p.N1044D	ENST00000263967	NM_006218.2	1044	Aat/Gat																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182662910	182662910	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	65	570	0	ENST00000292782.4:c.752T>A	p.Ile251Asn	p.I251N	ENST00000292782	NM_020640.2	251	aTt/aAt																																																																															
BCL6	604	MSKCC	GRCh37	3	187446953	187446953	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	166	687	0	ENST00000232014.4:c.1240T>A	p.Cys414Ser	p.C414S	ENST00000232014	NM_001130845.1	414	Tgc/Agc																																																																															
BCL6	604	MSKCC	GRCh37	3	187447519	187447519	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	92	549	0	ENST00000232014.4:c.674C>A	p.Pro225His	p.P225H	ENST00000232014	NM_001130845.1	225	cCc/cAc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801184	1801184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	166	779	1	ENST00000260795.2:c.313G>C	p.Gly105Arg	p.G105R	ENST00000260795		105	Ggg/Cgg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747964	41747964	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	11	179	0	ENST00000226382.2:c.805C>A	p.Pro269Thr	p.P269T	ENST00000226382	NM_003924.3	269	Cct/Act																																																																															
KIT	3815	MSKCC	GRCh37	4	55592204	55592204	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	26	493	0	ENST00000288135.5:c.1528G>T	p.Gly510Cys	p.G510C	ENST00000288135	NM_000222.2	510	Ggt/Tgt																																																																															
KDR	3791	MSKCC	GRCh37	4	55962494	55962494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	93	454	1	ENST00000263923.4:c.2630G>A	p.Ser877Asn	p.S877N	ENST00000263923	NM_002253.2	877	aGt/aAt																																																																															
KDR	3791	MSKCC	GRCh37	4	55979515	55979515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	171	574	0	ENST00000263923.4:c.932G>A	p.Ser311Asn	p.S311N	ENST00000263923	NM_002253.2	311	aGt/aAt																																																																															
KDR	3791	MSKCC	GRCh37	4	55987273	55987273	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	103	472	0	ENST00000263923.4:c.152T>A	p.Ile51Asn	p.I51N	ENST00000263923	NM_002253.2	51	aTt/aAt																																																																															
TET2	54790	MSKCC	GRCh37	4	106156355	106156355	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	64	285	0	ENST00000380013.4:c.1256C>A	p.Pro419His	p.P419H	ENST00000380013	NM_001127208.2	419	cCt/cAt																																																																															
TET2	54790	MSKCC	GRCh37	4	106157665	106157665	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	15	254	0	ENST00000380013.4:c.2566G>T	p.Gly856Ter	p.G856*	ENST00000380013	NM_001127208.2	856	Gga/Tga																																																																															
TET2	54790	MSKCC	GRCh37	4	106194022	106194022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	101	238	0	ENST00000380013.4:c.4484C>T	p.Ala1495Val	p.A1495V	ENST00000380013	NM_001127208.2	1495	gCc/gTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	22	252	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540628	187540628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	105	355	0	ENST00000441802.2:c.7112G>A	p.Ser2371Asn	p.S2371N	ENST00000441802	NM_005245.3	2371	aGc/aAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630465	187630465	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1439256953		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	179	748	1	ENST00000441802.2:c.517G>A	p.Ala173Thr	p.A173T	ENST00000441802	NM_005245.3	173	Gcc/Acc																																																																															
SDHA	6389	MSKCC	GRCh37	5	233651	233651	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	42	223	0	ENST00000264932.6:c.955A>G	p.Ile319Val	p.I319V	ENST00000264932	NM_004168.2	319	Att/Gtt																																																																															
TERT	7015	MSKCC	GRCh37	5	1253917	1253917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	92	621	0	ENST00000310581.5:c.3325G>T	p.Gly1109Trp	p.G1109W	ENST00000310581	NM_198253.2	1109	Ggg/Tgg																																																																															
TERT	7015	MSKCC	GRCh37	5	1278878	1278878	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	125	600	0	ENST00000310581.5:c.2164C>T	p.Gln722Ter	p.Q722*	ENST00000310581	NM_198253.2	722	Cag/Tag																																																																															
TERT	7015	MSKCC	GRCh37	5	1293833	1293833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	58	945	5	ENST00000310581.5:c.1168C>T	p.Arg390Trp	p.R390W	ENST00000310581	NM_198253.2	390	Cgg/Tgg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526216	31526216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	207	839	0	ENST00000344624.3:c.824C>A	p.Pro275Gln	p.P275Q	ENST00000344624		275	cCa/cAa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867520	35867520	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	50	251	0	ENST00000303115.3:c.334G>T	p.Gly112Ter	p.G112*	ENST00000303115	NM_002185.3	112	Gga/Tga																																																																															
IL7R	3575	MSKCC	GRCh37	5	35875622	35875622	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	51	325	0	ENST00000303115.3:c.809C>A	p.Pro270His	p.P270H	ENST00000303115	NM_002185.3	270	cCt/cAt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38953120	38953120	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	18	271	0	ENST00000357387.3:c.2864T>G	p.Leu955Arg	p.L955R	ENST00000357387	NM_152756.3	955	cTt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160664	56160664	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200705994		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	127	340	0	ENST00000399503.3:c.938G>A	p.Arg313Gln	p.R313Q	ENST00000399503	NM_005921.1	313	cGg/cAg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178664	56178664	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	19	205	0	ENST00000399503.3:c.3637G>T	p.Gly1213Ter	p.G1213*	ENST00000399503	NM_005921.1	1213	Gga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576486	67576487	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	31	359	0	ENST00000274335.5:c.770dup	p.Asn257LysfsTer10	p.N257Kfs*10	ENST00000274335		255	-/A																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588928	67588928	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	14	247	0	ENST00000274335.5:c.1020-1G>T		p.X340_splice	ENST00000274335		340																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67591007	67591007	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	18	174	1	ENST00000274335.5:c.1600C>T	p.Arg534Ter	p.R534*	ENST00000274335		534	Cga/Tga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675570	86675571	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	53	247	0	ENST00000274376.6:c.2513dup	p.Asn838LysfsTer2	p.N838Kfs*2	ENST00000274376	NM_002890.2	836	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	103	283	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	84	293	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112178717	112178717	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	82	495	0	ENST00000257430.4:c.7426A>G	p.Arg2476Gly	p.R2476G	ENST00000257430	NM_000038.5	2476	Agg/Ggg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131911514	131911514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143802516		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	33	413	0	ENST00000265335.6:c.259C>T	p.Arg87Cys	p.R87C	ENST00000265335		87	Cgt/Tgt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131915589	131915589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	10	240	0	ENST00000265335.6:c.587G>A	p.Arg196His	p.R196H	ENST00000265335		196	cGt/cAt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502737	149502737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	32	537	0	ENST00000261799.4:c.2051G>A	p.Cys684Tyr	p.C684Y	ENST00000261799	NM_002609.3	684	tGc/tAc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149504289	149504289	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	114	545	0	ENST00000261799.4:c.1912+1G>A		p.X638_splice	ENST00000261799	NM_002609.3	638																																																																																
PDGFRB	5159	MSKCC	GRCh37	5	149504328	149504328	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	115	585	0	ENST00000261799.4:c.1874C>A	p.Ser625Tyr	p.S625Y	ENST00000261799	NM_002609.3	625	tCt/tAt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149506081	149506081	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	80	522	0	ENST00000261799.4:c.1674+2T>C		p.X558_splice	ENST00000261799	NM_002609.3	558																																																																																
PDGFRB	5159	MSKCC	GRCh37	5	149512472	149512472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	78	483	1	ENST00000261799.4:c.968G>A	p.Gly323Asp	p.G323D	ENST00000261799	NM_002609.3	323	gGc/gAc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176516650	176516650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	108	604	0	ENST00000292408.4:c.47G>T	p.Gly16Val	p.G16V	ENST00000292408	NM_213647.1	16	gGg/gTg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517612	176517612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	129	900	2	ENST00000292408.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000292408	NM_213647.1	105	Ggc/Tgc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522596	176522596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	120	701	0	ENST00000292408.4:c.1693C>T	p.Arg565Trp	p.R565W	ENST00000292408	NM_213647.1	565	Cgg/Tgg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636644	176636644	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	27	293	0	ENST00000439151.2:c.1244A>G	p.Gln415Arg	p.Q415R	ENST00000439151	NM_022455.4	415	cAg/cGg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638953	176638953	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	44	498	0	ENST00000439151.2:c.3553T>C	p.Cys1185Arg	p.C1185R	ENST00000439151	NM_022455.4	1185	Tgt/Cgt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030325	180030325	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115824945		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	167	717	2	ENST00000261937.6:c.3959G>A	p.Arg1320Gln	p.R1320Q	ENST00000261937	NM_182925.4	1320	cGg/cAg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180045804	180045804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	118	681	1	ENST00000261937.6:c.2967G>T	p.Glu989Asp	p.E989D	ENST00000261937	NM_182925.4	989	gaG/gaT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047694	180047694	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	36	554	0	ENST00000261937.6:c.2321T>C	p.Met774Thr	p.M774T	ENST00000261937	NM_182925.4	774	aTg/aCg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057736	180057736	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	42	630	0	ENST00000261937.6:c.219G>T	p.Lys73Asn	p.K73N	ENST00000261937	NM_182925.4	73	aaG/aaT																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056274	26056274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	128	523	0	ENST00000343677.2:c.383C>A	p.Pro128His	p.P128H	ENST00000343677	NM_005319.3	128	cCt/cAt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911136	29911136	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	31	533	1	ENST00000376809.5:c.435G>T	p.Lys145Asn	p.K145N	ENST00000376809	NM_002116.7	145	aaG/aaT																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672782	30672782	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	141	787	0	ENST00000376406.3:c.4178G>T	p.Arg1393Met	p.R1393M	ENST00000376406	NM_014641.2	1393	aGg/aTg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673724	30673724	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61733207		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	45	632	0	ENST00000376406.3:c.3236G>A	p.Arg1079His	p.R1079H	ENST00000376406	NM_014641.2	1079	cGt/cAt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680192	30680192	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	167	779	2	ENST00000376406.3:c.1527C>A	p.His509Gln	p.H509Q	ENST00000376406	NM_014641.2	509	caC/caA																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324165	31324165	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	36	267	0	ENST00000412585.2:c.398T>C	p.Leu133Pro	p.L133P	ENST00000412585	NM_005514.6	133	cTc/cCc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32185034	32185034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	91	537	0	ENST00000375023.3:c.1634G>A	p.Gly545Asp	p.G545D	ENST00000375023	NM_004557.3	545	gGc/gAc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188850	32188850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	29	624	0	ENST00000375023.3:c.704C>T	p.Ala235Val	p.A235V	ENST00000375023	NM_004557.3	235	gCa/gTa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800429	32800429	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750440758		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	284	844	3	ENST00000374899.4:c.1118G>A	p.Arg373His	p.R373H	ENST00000374899	NM_018833.2	373	cGc/cAc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816544	32816544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	58	786	1	ENST00000354258.4:c.1631G>A	p.Arg544His	p.R544H	ENST00000354258	NM_000593.5	544	cGc/cAc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32820999	32820999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	49	900	1	ENST00000354258.4:c.595G>A	p.Ala199Thr	p.A199T	ENST00000354258	NM_000593.5	199	Gcc/Acc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287212	33287213	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	109	523	1	ENST00000374542.5:c.1884dup	p.Cys629LeufsTer29	p.C629Lfs*29	ENST00000374542	NM_001141970.1	628	-/C																																																																															
PIM1	5292	MSKCC	GRCh37	6	37139163	37139163	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	32	435	0	ENST00000373509.5:c.503T>C	p.Ile168Thr	p.I168T	ENST00000373509	NM_002648.3	168	aTc/aCc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982076	93982076	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	112	488	0	ENST00000369303.4:c.1389G>A	p.Trp463Ter	p.W463*	ENST00000369303	NM_004440.3	463	tgG/tgA																																																																															
FYN	2534	MSKCC	GRCh37	6	112015606	112015606	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	42	491	0	ENST00000368678.4:c.1236A>G	p.Ile412Met	p.I412M	ENST00000368678		412	atA/atG																																																																															
ROS1	6098	MSKCC	GRCh37	6	117642471	117642471	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	245	691	0	ENST00000368508.3:c.5728C>T	p.Arg1910Ter	p.R1910*	ENST00000368508	NM_002944.2	1910	Cga/Tga																																																																															
ROS1	6098	MSKCC	GRCh37	6	117663697	117663697	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	51	372	0	ENST00000368508.3:c.4535A>T	p.Asp1512Val	p.D1512V	ENST00000368508	NM_002944.2	1512	gAc/gTc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117674333	117674333	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	58	373	0	ENST00000368508.3:c.4142-1G>A		p.X1381_splice	ENST00000368508	NM_002944.2	1381																																																																																
ROS1	6098	MSKCC	GRCh37	6	117681061	117681061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	93	534	0	ENST00000368508.3:c.3559G>A	p.Val1187Ile	p.V1187I	ENST00000368508	NM_002944.2	1187	Gtt/Att																																																																															
ROS1	6098	MSKCC	GRCh37	6	117725441	117725441	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	75	458	0	ENST00000368508.3:c.438+2T>C		p.X146_splice	ENST00000368508	NM_002944.2	146																																																																																
TNFAIP3	7128	MSKCC	GRCh37	6	138199820	138199820	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	97	425	1	ENST00000237289.4:c.1238A>G	p.Lys413Arg	p.K413R	ENST00000237289	NM_001270507.1	413	aAg/aGg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202200	138202200	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3734553		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	30	426	0	ENST00000237289.4:c.2117G>A	p.Arg706Gln	p.R706Q	ENST00000237289	NM_001270507.1	706	cGa/cAa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001241	150001241	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	36	585	0	ENST00000253339.5:c.2363del	p.Gly788ValfsTer3	p.G788Vfs*3	ENST00000253339		788	gGt/gt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023204	150023204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	34	684	1	ENST00000253339.5:c.59C>T	p.Ala20Val	p.A20V	ENST00000253339		20	gCc/gTc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129417	152129417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	77	380	0	ENST00000206249.3:c.370C>T	p.His124Tyr	p.H124Y	ENST00000206249	NM_000125.3	124	Cac/Tac																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265307	152265307	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	53	248	0	ENST00000206249.3:c.761-1G>T		p.X254_splice	ENST00000206249	NM_000125.3	254																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157150545	157150545	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	31	374	0	ENST00000346085.5:c.1727C>A	p.Pro576His	p.P576H	ENST00000346085	NM_020732.3	576	cCt/cAt																																																																															
PARK2	5071	MSKCC	GRCh37	6	161781239	161781239	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	43	440	0	ENST00000366898.1:c.1168-2A>G		p.X390_splice	ENST00000366898	NM_004562.2	390																																																																																
PARK2	5071	MSKCC	GRCh37	6	162683713	162683713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	171	548	0	ENST00000366898.1:c.256G>A	p.Asp86Asn	p.D86N	ENST00000366898	NM_004562.2	86	Gac/Aac																																																																															
PARK2	5071	MSKCC	GRCh37	6	163148694	163148694	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	26	485	0	ENST00000366898.1:c.7G>T	p.Val3Leu	p.V3L	ENST00000366898	NM_004562.2	3	Gtg/Ttg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953016	2953016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	216	704	1	ENST00000396946.4:c.2924G>A	p.Arg975Gln	p.R975Q	ENST00000396946	NM_032415.4	975	cGg/cAg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450369	50450369	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	133	404	0	ENST00000331340.3:c.553A>G	p.Arg185Gly	p.R185G	ENST00000331340	NM_006060.4	185	Agg/Ggg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468014	50468014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	24	480	0	ENST00000331340.3:c.1249C>T	p.His417Tyr	p.H417Y	ENST00000331340	NM_006060.4	417	Cac/Tac																																																																															
MET	4233	MSKCC	GRCh37	7	116340234	116340234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	33	321	0	ENST00000397752.3:c.1096C>A	p.Pro366Thr	p.P366T	ENST00000397752	NM_000245.2	366	Cct/Act																																																																															
SMO	6608	MSKCC	GRCh37	7	128849213	128849213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	141	583	2	ENST00000249373.3:c.1441G>A	p.Glu481Lys	p.E481K	ENST00000249373	NM_005631.4	481	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140481389	140481389	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	21	410	0	ENST00000288602.6:c.1419G>T	p.Lys473Asn	p.K473N	ENST00000288602	NM_004333.4	473	aaG/aaT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151842373	151842373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	17	164	0	ENST00000262189.6:c.14039G>T	p.Gly4680Val	p.G4680V	ENST00000262189	NM_170606.2	4680	gGg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845352	151845352	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	46	595	0	ENST00000262189.6:c.13660A>G	p.Ile4554Val	p.I4554V	ENST00000262189	NM_170606.2	4554	Atc/Gtc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	142	673	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151871294	151871294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	95	482	0	ENST00000262189.6:c.9296C>T	p.Ala3099Val	p.A3099V	ENST00000262189	NM_170606.2	3099	gCc/gTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873531	151873531	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	37	597	0	ENST00000262189.6:c.9007A>G	p.Ser3003Gly	p.S3003G	ENST00000262189	NM_170606.2	3003	Agt/Ggt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877114	151877114	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	32	447	0	ENST00000262189.6:c.7247A>G	p.His2416Arg	p.H2416R	ENST00000262189	NM_170606.2	2416	cAt/cGt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187129	38187129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	265	784	0	ENST00000317025.8:c.1348C>T	p.His450Tyr	p.H450Y	ENST00000317025	NM_023034.1	450	Cat/Tat																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38273414	38273414	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	163	864	2	ENST00000425967.3:c.1921G>T	p.Gly641Cys	p.G641C	ENST00000425967	NM_001174067.1	641	Ggc/Tgc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38314984	38314984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	210	813	0	ENST00000425967.3:c.80C>T	p.Thr27Ile	p.T27I	ENST00000425967	NM_001174067.1	27	aCc/aTc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	38	642	3	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964443	70964443	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	112	617	0	ENST00000276594.2:c.1585C>A	p.His529Asn	p.H529N	ENST00000276594	NM_024504.3	529	Cat/Aat																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978681	70978681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	140	600	0	ENST00000276594.2:c.972G>T	p.Trp324Cys	p.W324C	ENST00000276594	NM_024504.3	324	tgG/tgT																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981933	70981933	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	36	768	2	ENST00000276594.2:c.163C>T	p.Gln55Ter	p.Q55*	ENST00000276594	NM_024504.3	55	Cag/Tag																																																																															
NBN	4683	MSKCC	GRCh37	8	90955551	90955551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	36	516	0	ENST00000265433.3:c.2114G>T	p.Gly705Val	p.G705V	ENST00000265433	NM_002485.4	705	gGa/gTa																																																																															
NBN	4683	MSKCC	GRCh37	8	90967689	90967689	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	87	428	0	ENST00000265433.3:c.1219T>C	p.Cys407Arg	p.C407R	ENST00000265433	NM_002485.4	407	Tgc/Cgc																																																																															
NBN	4683	MSKCC	GRCh37	8	90996756	90996756	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	133	470	0	ENST00000265433.3:c.34G>T	p.Gly12Ter	p.G12*	ENST00000265433	NM_002485.4	12	Gga/Tga																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864938	117864938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	124	342	0	ENST00000297338.2:c.1171C>T	p.Arg391Cys	p.R391C	ENST00000297338	NM_006265.2	391	Cgc/Tgc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117869671	117869671	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	77	448	0	ENST00000297338.2:c.523A>G	p.Ser175Gly	p.S175G	ENST00000297338	NM_006265.2	175	Agt/Ggt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742084	145742084	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	140	630	0	ENST00000428558.2:c.419del	p.Pro140GlnfsTer40	p.P140Qfs*40	ENST00000428558	NM_004260.3	140	cCa/ca																																																																															
JAK2	3717	MSKCC	GRCh37	9	5022168	5022168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	87	568	0	ENST00000381652.3:c.181G>A	p.Glu61Lys	p.E61K	ENST00000381652	NM_004972.3	61	Gag/Aag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8375939	8375939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	18	246	1	ENST00000356435.5:c.4658G>A	p.Cys1553Tyr	p.C1553Y	ENST00000356435		1553	tGc/tAc																																																																															
TEK	7010	MSKCC	GRCh37	9	27203012	27203012	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	53	561	0	ENST00000380036.4:c.2104C>A	p.Leu702Ile	p.L702I	ENST00000380036	NM_000459.3	702	Cta/Ata																																																																															
TEK	7010	MSKCC	GRCh37	9	27205046	27205046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	99	498	0	ENST00000380036.4:c.2347C>A	p.Gln783Lys	p.Q783K	ENST00000380036	NM_000459.3	783	Caa/Aaa																																																																															
PAX5	5079	MSKCC	GRCh37	9	37006523	37006523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	29	424	0	ENST00000358127.4:c.422C>T	p.Thr141Ile	p.T141I	ENST00000358127	NM_001280556.1	141	aCa/aTa																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80336430	80336430	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	64	328	0	ENST00000286548.4:c.890-1G>T		p.X297_splice	ENST00000286548	NM_002072.3	297																																																																																
NTRK2	4915	MSKCC	GRCh37	9	87338486	87338486	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	74	374	0	ENST00000277120.3:c.584-2A>G		p.X195_splice	ENST00000277120		195																																																																																
NTRK2	4915	MSKCC	GRCh37	9	87635188	87635188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	151	472	1	ENST00000277120.3:c.2240C>T	p.Thr747Met	p.T747M	ENST00000277120		747	aCg/aTg																																																																															
SYK	6850	MSKCC	GRCh37	9	93641094	93641094	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	106	569	2	ENST00000375746.1:c.1440G>T	p.Met480Ile	p.M480I	ENST00000375746	NM_001174167.1	480	atG/atT																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229496	98229496	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	43	503	0	ENST00000331920.6:c.2462A>G	p.Asp821Gly	p.D821G	ENST00000331920	NM_000264.3	821	gAc/gGc																																																																															
ABL1	25	MSKCC	GRCh37	9	133738156	133738156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	77	401	0	ENST00000318560.5:c.556G>A	p.Val186Ile	p.V186I	ENST00000318560	NM_005157.4	186	Gtc/Atc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135787818	135787818	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	24	410	0	ENST00000298552.3:c.764T>C	p.Val255Ala	p.V255A	ENST00000298552	NM_001162426.1	255	gTt/gCt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797313	135797313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	27	219	1	ENST00000298552.3:c.556G>A	p.Ala186Thr	p.A186T	ENST00000298552	NM_001162426.1	186	Gca/Aca																																																																															
RXRA	6256	MSKCC	GRCh37	9	137309069	137309069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	121	825	0	ENST00000481739.1:c.676G>A	p.Ala226Thr	p.A226T	ENST00000481739	NM_002957.4	226	Gcc/Acc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139418430	139418430	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	94	551	0	ENST00000277541.6:c.142T>C	p.Cys48Arg	p.C48R	ENST00000277541	NM_017617.3	48	Tgt/Cgt																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793255	139793255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	46	669	1	ENST00000247668.2:c.63G>T	p.Lys21Asn	p.K21N	ENST00000247668	NM_021138.3	21	aaG/aaT																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814714	139814714	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	37	492	0	ENST00000247668.2:c.707A>G	p.Glu236Gly	p.E236G	ENST00000247668	NM_021138.3	236	gAg/gGg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932060	39932060	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	61	384	0	ENST00000378444.4:c.2539C>T	p.Gln847Ter	p.Q847*	ENST00000378444	NM_001123385.1	847	Cag/Tag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922690	44922690	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	81	170	0	ENST00000377967.4:c.1551G>T	p.Gln517His	p.Q517H	ENST00000377967	NM_021140.2	517	caG/caT																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44945109	44945109	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	104	212	1	ENST00000377967.4:c.3434-1G>T		p.X1145_splice	ENST00000377967	NM_021140.2	1145																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53247025	53247025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	56	323	0	ENST00000375401.3:c.475C>T	p.Arg159Cys	p.R159C	ENST00000375401	NM_004187.3	159	Cgc/Tgc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412044	63412044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	32	418	0	ENST00000330258.3:c.1123C>T	p.Pro375Ser	p.P375S	ENST00000330258	NM_152424.3	375	Cca/Tca																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	216	462	0	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																															
MED12	9968	MSKCC	GRCh37	X	70343505	70343505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	165	328	0	ENST00000374080.3:c.1679C>T	p.Ala560Val	p.A560V	ENST00000374080		560	gCt/gTt																																																																															
MED12	9968	MSKCC	GRCh37	X	70347277	70347277	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	20	271	0	ENST00000374080.3:c.2941T>C	p.Ser981Pro	p.S981P	ENST00000374080		981	Tcc/Ccc																																																																															
MED12	9968	MSKCC	GRCh37	X	70351421	70351421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	183	341	0	ENST00000374080.3:c.4069C>T	p.Arg1357Cys	p.R1357C	ENST00000374080		1357	Cgc/Tgc																																																																															
ATRX	546	MSKCC	GRCh37	X	76938134	76938134	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	212	387	0	ENST00000373344.5:c.2614C>G	p.Gln872Glu	p.Q872E	ENST00000373344	NM_000489.3	872	Caa/Gaa																																																																															
ATRX	546	MSKCC	GRCh37	X	76938538	76938538	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	46	332	0	ENST00000373344.5:c.2210T>C	p.Ile737Thr	p.I737T	ENST00000373344	NM_000489.3	737	aTc/aCc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123196978	123196978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	76	226	0	ENST00000218089.9:c.1744G>A	p.Ala582Thr	p.A582T	ENST00000218089	NM_001042749.1	582	Gca/Aca																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78599563	78599563	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	43	510	1	ENST00000306801.3:c.235A>G	p.Thr79Ala	p.T79A	ENST00000306801	NM_020761.2	79	Acg/Gcg																																																																															
RB1	5925	MSKCC	GRCh37	13	48941653	48941653	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0033384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	38	224	0	ENST00000267163.4:c.963C>G	p.Tyr321Ter	p.Y321*	ENST00000267163	NM_000321.2	321	taC/taG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	278	916	0	ENST00000269305.4:c.535C>G	p.His179Asp	p.H179D	ENST00000269305	NM_001126112.2	179	Cat/Gat																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	121	657	0	ENST00000346208.3:c.1220_1221insA	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcAg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110073	115110073	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	223	1145	0	ENST00000257566.3:c.1805del	p.Pro602LeufsTer30	p.P602Lfs*30	ENST00000257566	NM_016569.3	602	cCt/ct																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806242	1806242	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	140	986	0	ENST00000260795.2:c.1261C>T	p.Arg421Ter	p.R421*	ENST00000260795		421	Cga/Tga																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73047240	73047246	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGGAA	GGGGGAA	AG			P-0033384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	59	541	2	ENST00000356692.5:c.47_53delinsAG	p.Arg16LysfsTer29	p.R16Kfs*29	ENST00000356692		16	aGGGGGAAa/aAGa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0035026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	122	585	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55210075	55210075	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	158	614	0	ENST00000275493.2:c.185T>G	p.Leu62Arg	p.L62R	ENST00000275493	NM_005228.3	62	cTt/cGt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86627249	86627249	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	53	371	0	ENST00000274376.6:c.624G>C	p.Glu208Asp	p.E208D	ENST00000274376	NM_002890.2	208	gaG/gaC																																																																															
ID3	3399	MSKCC	GRCh37	1	23885511	23885512	+	splice_acceptor_variant	Splice_Site	INS	-	-	TGAT			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	98	383	0	ENST00000374561.5:c.301-5_301-2dup		p.X101_splice	ENST00000374561	NM_002167.4	101																																																																																
CSDE1	7812	MSKCC	GRCh37	1	115261356	115261357	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	92	330	0	ENST00000438362.2:c.2364dup	p.Lys789GlnfsTer9	p.K789Qfs*9	ENST00000438362	NM_001242891.1	788	-/C																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	77	290	1	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	101	436	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244913	46244913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	136	563	0	ENST00000334344.6:c.3007G>A	p.Val1003Ile	p.V1003I	ENST00000334344	NM_152641.2	1003	Gtc/Atc																																																																															
CDK4	1019	MSKCC	GRCh37	12	58142976	58142976	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	165	684	0	ENST00000257904.6:c.808C>T	p.Gln270Ter	p.Q270*	ENST00000257904	NM_000075.3	270	Cag/Tag																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856094	111856094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	125	304	0	ENST00000341259.2:c.145G>A	p.Ala49Thr	p.A49T	ENST00000341259	NM_005475.2	49	Gcc/Acc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954273	32954273	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	68	464	3	ENST00000380152.3:c.9253delA	p.Thr3085GlnfsTer19	p.T3085Qfs*19	ENST00000380152		3083	Aaa/aa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2135029	2135029	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	168	698	0	ENST00000219476.3:c.4569+2T>C		p.X1523_splice	ENST00000219476	NM_000548.3	1523																																																																																
TP53	7157	MSKCC	GRCh37	17	7579370	7579376	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCCCT	CTGCCCT	-			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	311	665	0	ENST00000269305.4:c.311_317del	p.Gln104ProfsTer17	p.Q104Pfs*17	ENST00000269305	NM_001126112.2	104	cAGGGCAGc/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229009	36229009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	209	805	2	ENST00000222270.7:c.7789G>A	p.Ala2597Thr	p.A2597T	ENST00000222270	NM_014727.1	2597	Gcg/Acg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967065	25967071	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCCTC	CTGCCTC	-			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	170	578	0	ENST00000435504.4:c.2135_2141del	p.Gly712ValfsTer85	p.G712Vfs*85	ENST00000435504		712	gGAGGCAGt/gt																																																																															
ACVR1	90	MSKCC	GRCh37	2	158637068	158637069	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-	rs141073095		P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	126	567	5	ENST00000263640.3:c.111_112del	p.Cys37Ter	p.C37*	ENST00000263640	NM_001105.4	37	tgTGaa/tgaa																																																																															
EP300	2033	MSKCC	GRCh37	22	41572924	41572924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	91	651	1	ENST00000263253.7:c.5209C>T	p.Arg1737Cys	p.R1737C	ENST00000263253	NM_001429.3	1737	Cgc/Tgc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37056036	37056036	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	164	242	0	ENST00000231790.2:c.790+1G>A		p.X264_splice	ENST00000231790	NM_000249.3	264																																																																																
SETD2	29072	MSKCC	GRCh37	3	47163377	47163377	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	62	344	0	ENST00000409792.3:c.2749del	p.Ser917ValfsTer5	p.S917Vfs*5	ENST00000409792	NM_014159.6	917	Agt/gt																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	70	328	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174775	112174776	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	46	215	0	ENST00000257430.4:c.3485dup	p.Tyr1162Ter	p.Y1162*	ENST00000257430	NM_000038.5	1162	tat/tAat																																																																															
ROS1	6098	MSKCC	GRCh37	6	117704481	117704481	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	80	276	2	ENST00000368508.3:c.2495del	p.Lys832ArgfsTer2	p.K832Rfs*2	ENST00000368508	NM_002944.2	832	aAg/ag																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978602	70978602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	136	633	0	ENST00000276594.2:c.1051G>A	p.Glu351Lys	p.E351K	ENST00000276594	NM_024504.3	351	Gag/Aag																																																																															
TSC1	7248	MSKCC	GRCh37	9	135776976	135776977	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	116	411	0	ENST00000298552.3:c.2501dup	p.Leu835AlafsTer5	p.L835Afs*5	ENST00000298552	NM_001162426.1	834	aag/aaAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63409904	63409904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	105	201	0	ENST00000330258.3:c.3263C>T	p.Pro1088Leu	p.P1088L	ENST00000330258	NM_152424.3	1088	cCc/cTc																																																																															
AR	367	MSKCC	GRCh37	X	66765796	66765797	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	192	482	0	ENST00000374690.3:c.812dup	p.Leu272ThrfsTer33	p.L272Tfs*33	ENST00000374690	NM_000044.3	270	gcc/gCcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	20	468	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420108	49420108	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	26	550	0	ENST00000301067.7:c.15641G>C	p.Arg5214Pro	p.R5214P	ENST00000301067	NM_003482.3	5214	cGc/cCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178937440	178937440	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	21	365	0	ENST00000263967.3:c.1828A>G	p.Met610Val	p.M610V	ENST00000263967	NM_006218.2	610	Atg/Gtg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86676338	86676338	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0035505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	11	173	0	ENST00000274376.6:c.2616T>A	p.Tyr872Ter	p.Y872*	ENST00000274376	NM_002890.2	872	taT/taA																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120338	94120338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	23	306	0	ENST00000369303.4:c.713C>T	p.Ala238Val	p.A238V	ENST00000369303	NM_004440.3	238	gCa/gTa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324674	31324674	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11546719		P-0035506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	10	220	2	ENST00000412585.2:c.134G>A	p.Arg45His	p.R45H	ENST00000412585	NM_005514.6	45	cGc/cAc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851512	63851512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	23	516	0	ENST00000279873.7:c.2290G>A	p.Glu764Lys	p.E764K	ENST00000279873	NM_032199.2	764	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	215	526	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	130	261	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	203	498	0	ENST00000263967.3:c.3012G>A	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atA																																																																															
JUN	3725	MSKCC	GRCh37	1	59248409	59248409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	197	419	0	ENST00000371222.2:c.334G>A	p.Glu112Lys	p.E112K	ENST00000371222	NM_002228.3	112	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023380	27023389	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCGCCGCG	CGCCGCCGCG	-			P-0035508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	36	325	0	ENST00000324856.7:c.486_495del	p.Ala163ProfsTer66	p.A163Pfs*66	ENST00000324856	NM_006015.4	162	gcCGCCGCCGCG/gc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023452	27023452	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	121	538	1	ENST00000324856.7:c.558del	p.Ser186ArgfsTer46	p.S186Rfs*46	ENST00000324856	NM_006015.4	186	agC/ag																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577348	64577349	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0035508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	259	575	0	ENST00000337652.1:c.233_234del	p.Phe78SerfsTer38	p.F78Sfs*38	ENST00000337652	NM_130803.2	78	tTT/t																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43767812	43767812	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	183	443	0	ENST00000382044.4:c.1036C>G	p.Leu346Val	p.L346V	ENST00000382044	NM_001141980.1	346	Ctc/Gtc																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805489	46805489	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	318	788	0	ENST00000290295.7:c.467G>C	p.Gly156Ala	p.G156A	ENST00000290295	NM_006361.5	156	gGa/gCa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138403474	138403474	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	181	422	0	ENST00000289153.2:c.2308G>C	p.Glu770Gln	p.E770Q	ENST00000289153	NM_006219.2	770	Gaa/Caa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177654	56177655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0035508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	147	366	0	ENST00000399503.3:c.2629_2630dup	p.Leu877PhefsTer33	p.L877Ffs*33	ENST00000399503	NM_005921.1	876	act/acTTt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180036979	180036979	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	266	610	0	ENST00000261937.6:c.3733G>C	p.Glu1245Gln	p.E1245Q	ENST00000261937	NM_182925.4	1245	Gag/Cag																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001099	150001099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	188	470	0	ENST00000253339.5:c.2505G>C	p.Leu835Phe	p.L835F	ENST00000253339		835	ttG/ttC																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	248	563	0	ENST00000206249.3:c.1138G>A	p.Glu380Lys	p.E380K	ENST00000206249	NM_000125.3	380	Gaa/Aaa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572516	64572516	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	143	568	1	ENST00000337652.1:c.1355T>C	p.Phe452Ser	p.F452S	ENST00000337652	NM_130803.2	452	tTt/tCt																																																																															
ATM	472	MSKCC	GRCh37	11	108218021	108218021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	153	325	0	ENST00000278616.4:c.8600G>A	p.Gly2867Glu	p.G2867E	ENST00000278616	NM_000051.3	2867	gGa/gAa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0035510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	17	530	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0035510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	69	757	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775782	9775782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	50	758	0	ENST00000377346.4:c.325G>A	p.Val109Met	p.V109M	ENST00000377346	NM_005026.3	109	Gtg/Atg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217247	7217248	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	67	738	0	ENST00000380728.2:c.457dup	p.Met153AsnfsTer53	p.M153Nfs*53	ENST00000380728		153	atg/aAtg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011212	12011212	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	26	403	0	ENST00000353533.5:c.622del	p.Ile208SerfsTer3	p.I208Sfs*3	ENST00000353533	NM_003010.3	207	Aaa/aa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46275994	46275994	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	38	663	0	ENST00000371998.3:c.3430C>T	p.Gln1144Ter	p.Q1144*	ENST00000371998		1144	Cag/Tag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026853	71026853	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	29	427	0	ENST00000318789.4:c.1369G>T	p.Glu457Ter	p.E457*	ENST00000318789	NM_032682.5	457	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	59	485	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034475	47034475	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	109	675	0	ENST00000329236.7:c.329G>A	p.Trp110Ter	p.W110*	ENST00000329236	NM_001204466.1	110	tGg/tAg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509915	106509915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	76	649	0	ENST00000359195.3:c.1909G>T	p.Asp637Tyr	p.D637Y	ENST00000359195	NM_002649.2	637	Gat/Tat																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363090	40363090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	62	574	1	ENST00000397332.2:c.1139G>T	p.Arg380Leu	p.R380L	ENST00000397332	NM_001033082.2	380	cGg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743859	40743859	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	63	506	0	ENST00000373198.4:c.3136del	p.Arg1046AlafsTer54	p.R1046Afs*54	ENST00000373198	NM_133170.3	1046	Cgc/gc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727441	66727441	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	108	285	1	ENST00000307102.5:c.157T>C	p.Phe53Leu	p.F53L	ENST00000307102	NM_002755.3	53	Ttt/Ctt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145662	11145662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	218	479	0	ENST00000344626.4:c.4024G>A	p.Glu1342Lys	p.E1342K	ENST00000344626	NM_003072.3	1342	Gag/Aag																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843699	156843699	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	334	653	0	ENST00000524377.1:c.1125G>C	p.Met375Ile	p.M375I	ENST00000524377	NM_002529.3	375	atG/atC																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56488220	56488220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	176	383	1	ENST00000267101.3:c.1739G>T	p.Arg580Leu	p.R580L	ENST00000267101	NM_001982.3	580	cGa/cTa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2106676	2106676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	270	594	0	ENST00000219476.3:c.680G>A	p.Cys227Tyr	p.C227Y	ENST00000219476	NM_000548.3	227	tGc/tAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600448	10600448	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	102	542	0	ENST00000171111.5:c.1407T>A	p.Asn469Lys	p.N469K	ENST00000171111	NM_203500.1	469	aaT/aaA																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133803	55133804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	141	310	0	ENST00000257290.5:c.1017dup	p.Arg340AlafsTer19	p.R340Afs*19	ENST00000257290	NM_006206.4	339	gtg/gtGg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444424	50444424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	141	274	0	ENST00000331340.3:c.354G>C	p.Lys118Asn	p.K118N	ENST00000331340	NM_006060.4	118	aaG/aaC																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737166	145737166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1474	217	464	0	ENST00000428558.2:c.3400G>A	p.Asp1134Asn	p.D1134N	ENST00000428558	NM_004260.3	1134	Gat/Aat																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410145	63410145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	228	550	0	ENST00000330258.3:c.3022C>A	p.Pro1008Thr	p.P1008T	ENST00000330258	NM_152424.3	1008	Cca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0035140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	118	567	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
STK11	6794	MSKCC	GRCh37	19	1221315	1221316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	45	565	1	ENST00000326873.7:c.838_839insT	p.Pro280LeufsTer5	p.P280Lfs*5	ENST00000326873	NM_000455.4	280	ccc/cTcc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039440	47039440	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	T			P-0035140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	50	259	0	ENST00000329236.7:c.828+4G>T		p.X276_splice	ENST00000329236	NM_001204466.1	276																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0035156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	211	464	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578419	7578420	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AG			P-0035156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	31	685	1	ENST00000269305.4:c.510_511delinsCT	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	170	acGGag/acCTag																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513346	44513346	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	42	442	0	ENST00000291552.4:c.589T>G	p.Ser197Ala	p.S197A	ENST00000291552	NM_006758.2	197	Tcc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0035340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	147	761	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221322	1221322	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	74	637	0	ENST00000326873.7:c.845T>G	p.Leu282Arg	p.L282R	ENST00000326873	NM_000455.4	282	cTc/cGc																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2494637	2494637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	76	661	1	ENST00000355716.4:c.777G>T	p.Gln259His	p.Q259H	ENST00000355716	NM_003820.2	259	caG/caT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431922	49431922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	70	780	0	ENST00000301067.7:c.9217G>A	p.Val3073Ile	p.V3073I	ENST00000301067	NM_003482.3	3073	Gta/Ata																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112464	115112464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	71	542	1	ENST00000257566.3:c.1276G>T	p.Gly426Trp	p.G426W	ENST00000257566	NM_016569.3	426	Ggg/Tgg																																																																															
SDHA	6389	MSKCC	GRCh37	5	251135	251135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	22	176	0	ENST00000264932.6:c.1580G>T	p.Arg527Leu	p.R527L	ENST00000264932	NM_004168.2	527	cGt/cTt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141568600	141568600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	45	569	0	ENST00000220592.5:c.862C>T	p.Pro288Ser	p.P288S	ENST00000220592	NM_012154.3	288	Ccc/Tcc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0035488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	63	433	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034492	47034492	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0035488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	178	529	1	ENST00000329236.7:c.345+1G>A		p.X115_splice	ENST00000329236	NM_001204466.1	115																																																																																
CD276	80381	MSKCC	GRCh37	15	74000805	74000805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	109	456	0	ENST00000318443.5:c.1495G>A	p.Glu499Lys	p.E499K	ENST00000318443	NM_001024736.1	499	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692902	89692902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	88	482	0	ENST00000371953.3:c.386G>A	p.Gly129Glu	p.G129E	ENST00000371953	NM_000314.4	129	gGa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579368	7579368	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	304	641	0	ENST00000269305.4:c.319del	p.Tyr107ThrfsTer16	p.Y107Tfs*16	ENST00000269305	NM_001126112.2	107	Tac/ac																																																																															
PMS2	5395	MSKCC	GRCh37	7	6042149	6042149	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	60	439	0	ENST00000265849.7:c.472A>T	p.Ser158Cys	p.S158C	ENST00000265849	NM_000535.5	158	Agc/Tgc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849801	156849801	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	99	436	0	ENST00000524377.1:c.2057G>T	p.Arg686Leu	p.R686L	ENST00000524377	NM_002529.3	686	cGc/cTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599910	10599910	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	220	627	0	ENST00000171111.5:c.1666G>T	p.Ala556Ser	p.A556S	ENST00000171111	NM_203500.1	556	Gcc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	182	417	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NF1	4763	MSKCC	GRCh37	17	29592251	29592251	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	20	160	0	ENST00000358273.4:c.4729C>T	p.Gln1577Ter	p.Q1577*	ENST00000358273	NM_001042492.2	1577	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578197	7578197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	117	605	1	ENST00000269305.4:c.652G>A	p.Val218Met	p.V218M	ENST00000269305	NM_001126112.2	218	Gtg/Atg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72163733	72163733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	112	553	0	ENST00000357731.5:c.625G>A	p.Val209Met	p.V209M	ENST00000357731	NM_173808.2	209	Gtg/Atg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573730	64573730	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	151	505	0	ENST00000337652.1:c.1038G>A	p.Trp346Ter	p.W346*	ENST00000337652	NM_130803.2	346	tgG/tgA																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38591749	38591749	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	73	314	0	ENST00000299084.4:c.207+1G>T		p.X69_splice	ENST00000299084	NM_152594.2	69																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3777819	3777819	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	181	930	0	ENST00000262367.5:c.7229C>G	p.Pro2410Arg	p.P2410R	ENST00000262367	NM_004380.2	2410	cCc/cGc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9928000	9928000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	66	368	0	ENST00000330684.3:c.1739G>A	p.Ser580Asn	p.S580N	ENST00000330684	NM_001134407.1	580	aGc/aAc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17129578	17129578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	141	717	2	ENST00000285071.4:c.308C>A	p.Ser103Tyr	p.S103Y	ENST00000285071	NM_144997.5	103	tCc/tAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603033	48603033	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	68	373	0	ENST00000342988.3:c.1334G>T	p.Arg445Leu	p.R445L	ENST00000342988	NM_005359.5	445	cGa/cTa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096100	178096100	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	97	439	0	ENST00000397062.3:c.1231C>T	p.Gln411Ter	p.Q411*	ENST00000397062	NM_006164.4	411	Cag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89176402	89176402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	62	259	0	ENST00000336596.2:c.132G>C	p.Trp44Cys	p.W44C	ENST00000336596	NM_005233.5	44	tgG/tgC																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200041	128200041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	131	740	1	ENST00000341105.2:c.1264C>A	p.Gln422Lys	p.Q422K	ENST00000341105	NM_032638.4	422	Cag/Aag																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169953120	169953120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	104	365	0	ENST00000295797.4:c.204G>A	p.Met68Ile	p.M68I	ENST00000295797	NM_002740.5	68	atG/atA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630533	187630533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	150	648	0	ENST00000441802.2:c.449C>T	p.Ser150Leu	p.S150L	ENST00000441802	NM_005245.3	150	tCa/tTa																																																																															
SESN1	27244	MSKCC	GRCh37	6	109312026	109312026	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	81	367	0	ENST00000436639.2:c.1246G>T	p.Glu416Ter	p.E416*	ENST00000436639	NM_014454.2	416	Gaa/Taa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864827	117864827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	57	485	0	ENST00000297338.2:c.1282G>A	p.Glu428Lys	p.E428K	ENST00000297338	NM_006265.2	428	Gag/Aag																																																																															
AR	367	MSKCC	GRCh37	X	66766086	66766086	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	117	693	0	ENST00000374690.3:c.1098C>G	p.Asn366Lys	p.N366K	ENST00000374690	NM_000044.3	366	aaC/aaG																																																																															
MED12	9968	MSKCC	GRCh37	X	70357054	70357054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	89	659	0	ENST00000374080.3:c.5569C>T	p.Pro1857Ser	p.P1857S	ENST00000374080		1857	Cca/Tca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	157	471	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	100	547	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0035515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	100	572	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112174119	112174119	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	109	270	0	ENST00000257430.4:c.2828C>A	p.Ser943Ter	p.S943*	ENST00000257430	NM_000038.5	943	tCa/tAa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480469	89480469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	29	276	0	ENST00000336596.2:c.2306G>A	p.Arg769His	p.R769H	ENST00000336596	NM_005233.5	769	cGt/cAt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396278	396278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	207	703	0	ENST00000262320.3:c.748G>T	p.Asp250Tyr	p.D250Y	ENST00000262320	NM_003502.3	250	Gac/Tac																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520168	9520168	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0035522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	149	354	0	ENST00000353224.5:c.2101A>T	p.Lys701Ter	p.K701*	ENST00000353224	NM_177990.2	701	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0035522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	272	539	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
NF1	4763	MSKCC	GRCh37	17	29684301	29684302	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	219	416	0	ENST00000358273.4:c.7885dup	p.Tyr2629LeufsTer5	p.Y2629Lfs*5	ENST00000358273	NM_001042492.2	2628	-/T																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591899	48591911	+	frameshift_variant	Frame_Shift_Del	DEL	GGACCCTTCTGGA	GGACCCTTCTGGA	-			P-0035522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	142	367	0	ENST00000342988.3:c.1065_1077del	p.Asp355GlufsTer25	p.D355Efs*25	ENST00000342988	NM_005359.5	354	gtGGACCCTTCTGGA/gt																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504430	186504430	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	176	450	0	ENST00000323963.5:c.767G>C	p.Arg256Thr	p.R256T	ENST00000323963		256	aGa/aCa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53231062	53231062	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	208	441	0	ENST00000375401.3:c.1840G>T	p.Ala614Ser	p.A614S	ENST00000375401	NM_004187.3	614	Gct/Tct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936094	+	missense_variant	Missense_Mutation	ONP	AGC	AGC	GGA			P-0035522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	338	452	0	ENST00000263967.3:c.1634_1636delinsGGA	p.Glu545_Gln546delinsGlyLys	p.E545_Q546delinsGK	ENST00000263967	NM_006218.2	545	gAGCag/gGGAag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	66	502	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0035524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	81	660	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0035524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	46	495	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11999013	11999013	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0035524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	46	289	0	ENST00000353533.5:c.513+2T>C		p.X171_splice	ENST00000353533	NM_003010.3	171																																																																																
PARP1	142	MSKCC	GRCh37	1	226556023	226556023	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0035524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	37	289	0	ENST00000366794.5:c.2155-1G>A		p.X719_splice	ENST00000366794	NM_001618.3	719																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971140	21971159	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCAGTTGGGCTCCGCGCC	GCGCAGTTGGGCTCCGCGCC	-			P-0035524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	37	429	0	ENST00000304494.5:c.199_218del	p.Gly67ArgfsTer46	p.G67Rfs*46	ENST00000304494	NM_000077.4	67	GGCGCGGAGCCCAACTGCGCc/c																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	159	469	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578547	7578552	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GGGGAG	GGGGAG	-			P-0035525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	183	813	0	ENST00000269305.4:c.378_383del	p.Ser127_Pro128del	p.S127_P128del	ENST00000269305	NM_001126112.2	126	taCTCCCCt/tat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573530	48573530	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	95	315	0	ENST00000342988.3:c.114del	p.Ala39GlnfsTer6	p.A39Qfs*6	ENST00000342988	NM_005359.5	38	agA/ag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974774	21974783	+	protein_altering_variant	In_Frame_Del	DEL	GTGGCCAGCC	GTGGCCAGCC	A			P-0035525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	79	156	0	ENST00000304494.5:c.44_53delinsT	p.Trp15_Thr18delinsLeu	p.W15_T18delinsL	ENST00000304494	NM_000077.4	15	tGGCTGGCCACg/tTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	73	673	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0035041-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	154	535	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0035041-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	132	667	1	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740709	145740709	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0035041-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			506	29	544	0	ENST00000428558.2:c.1390+1G>A		p.X464_splice	ENST00000428558	NM_004260.3	464																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44966730	44966730	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035041-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			233	106	459	0	ENST00000377967.4:c.3954A>G	p.Ile1318Met	p.I1318M	ENST00000377967	NM_021140.2	1318	atA/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0035333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	330	620	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	202	467	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	53	382	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916947	178916947	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	62	399	0	ENST00000263967.3:c.334A>T	p.Ile112Phe	p.I112F	ENST00000263967	NM_006218.2	112	Atc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	361	678	1	ENST00000269305.4:c.523C>T	p.Arg175Cys	p.R175C	ENST00000269305	NM_001126112.2	175	Cgc/Tgc																																																																															
BARD1	580	MSKCC	GRCh37	2	215674186	215674186	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	98	526	0	ENST00000260947.4:c.108C>G	p.His36Gln	p.H36Q	ENST00000260947	NM_000465.2	36	caC/caG																																																																															
CBL	867	MSKCC	GRCh37	11	119142584	119142584	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	37	318	0	ENST00000264033.4:c.583G>T	p.Gly195Trp	p.G195W	ENST00000264033	NM_005188.3	195	Ggg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	283	445	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29002038	29002038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	53	411	0	ENST00000282397.4:c.1127C>T	p.Ala376Val	p.A376V	ENST00000282397	NM_002019.4	376	gCg/gTg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724782	43724783	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	90	650	0	ENST00000382044.4:c.3284dup	p.Met1095IlefsTer5	p.M1095Ifs*5	ENST00000382044	NM_001141980.1	1095	atg/atTg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217667	7217667	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	174	499	2	ENST00000380728.2:c.260T>C	p.Phe87Ser	p.F87S	ENST00000380728		87	tTc/tCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578262	7578263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	185	587	3	ENST00000269305.4:c.586_587insT	p.Arg196LeufsTer13	p.R196Lfs*13	ENST00000269305	NM_001126112.2	196	cga/cTga																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66526546	66526546	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	61	381	1	ENST00000358598.2:c.1102C>T	p.Arg368Ter	p.R368*	ENST00000358598	NM_212471.2	368	Cga/Tga																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794982	242794982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	196	844	10	ENST00000334409.5:c.227C>T	p.Thr76Met	p.T76M	ENST00000334409	NM_005018.2	76	aCg/aTg																																																																															
ERG	2078	MSKCC	GRCh37	21	39775482	39775482	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	77	607	1	ENST00000288319.7:c.538A>G	p.Thr180Ala	p.T180A	ENST00000288319	NM_182918.3	180	Acc/Gcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	168	524	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55131146	55131146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	140	566	1	ENST00000257290.5:c.689C>T	p.Thr230Met	p.T230M	ENST00000257290	NM_006206.4	230	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	68	243	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158619	26158682	+	frameshift_variant	Frame_Shift_Del	DEL	CGCAGGCGAGGCTTCCCGCCTGGCGCATTACAACAAGCGCTCGACCATCACCTCCAGGGAGATC	CGCAGGCGAGGCTTCCCGCCTGGCGCATTACAACAAGCGCTCGACCATCACCTCCAGGGAGATC	-			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	58	212	0	ENST00000289316.2:c.223_286del	p.Ala75ArgfsTer39	p.A75Rfs*39	ENST00000289316	NM_138720.2	74	atCGCAGGCGAGGCTTCCCGCCTGGCGCATTACAACAAGCGCTCGACCATCACCTCCAGGGAGATC/at																																																																															
PARK2	5071	MSKCC	GRCh37	6	162475192	162475192	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	50	352	0	ENST00000366898.1:c.549G>A	p.Trp183Ter	p.W183*	ENST00000366898	NM_004562.2	183	tgG/tgA																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953088	2953088	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	102	660	0	ENST00000396946.4:c.2852A>C	p.Glu951Ala	p.E951A	ENST00000396946	NM_032415.4	951	gAg/gCg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372279	55372280	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	58	360	0	ENST00000297316.4:c.969_970delinsAA	p.His323_Gln324delinsGlnLys	p.H323_Q324delinsQK	ENST00000297316	NM_022454.3	323	caCCag/caAAag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0035339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	249	622	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63537592	63537592	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	65	539	0	ENST00000307078.5:c.1040T>C	p.Val347Ala	p.V347A	ENST00000307078	NM_004655.3	347	gTg/gCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	157	477	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	20	284	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	36	680	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573628	48573628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	27	386	1	ENST00000342988.3:c.212G>T	p.Cys71Phe	p.C71F	ENST00000342988	NM_005359.5	71	tGt/tTt																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518781	204518781	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	16	319	0	ENST00000367182.3:c.1444C>G	p.Gln482Glu	p.Q482E	ENST00000367182	NM_001278516.1	482	Cag/Gag																																																																															
RET	5979	MSKCC	GRCh37	10	43617449	43617449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	49	549	0	ENST00000355710.3:c.2786C>T	p.Thr929Ile	p.T929I	ENST00000355710	NM_020975.4	929	aCc/aTc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589793	28589793	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	39	505	0	ENST00000241453.7:c.2587G>T	p.Gly863Cys	p.G863C	ENST00000241453	NM_004119.2	863	Ggc/Tgc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348112	348112	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	48	825	1	ENST00000262320.3:c.1394A>C	p.Glu465Ala	p.E465A	ENST00000262320	NM_003502.3	465	gAg/gCg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945741	17945741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	61	761	0	ENST00000458235.1:c.2119G>T	p.Asp707Tyr	p.D707Y	ENST00000458235	NM_000215.3	707	Gac/Tac																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278041	18278041	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	57	694	0	ENST00000222254.8:c.1661G>C	p.Arg554Thr	p.R554T	ENST00000222254	NM_005027.3	554	aGa/aCa																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308353	30308353	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	47	571	0	ENST00000262643.3:c.367A>G	p.Lys123Glu	p.K123E	ENST00000262643	NM_001238.2	123	Aag/Gag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268891	55268891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	53	772	0	ENST00000275493.2:c.2957G>A	p.Arg986Lys	p.R986K	ENST00000275493	NM_005228.3	986	aGa/aAa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227682	53227682	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	42	599	0	ENST00000375401.3:c.2506C>T	p.Gln836Ter	p.Q836*	ENST00000375401	NM_004187.3	836	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	85	530	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876449	35876449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2229232		P-0035444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	83	687	1	ENST00000303115.3:c.1241C>T	p.Thr414Met	p.T414M	ENST00000303115	NM_002185.3	414	aCg/aTg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39241093	39241093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	86	587	0	ENST00000402219.2:c.1978C>T	p.Arg660Cys	p.R660C	ENST00000402219	NM_005633.3	660	Cgc/Tgc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	231	467	6	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	231	535	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	109	341	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	133	293	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	476	676	9	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	153	623	0	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	45	226	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	321	522	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099402	157099403	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAG			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	20	171	0	ENST00000346085.5:c.360_362dupGCA	p.Gln131dup	p.Q131dup	ENST00000346085	NM_020732.3	131	-/CAG																																																																															
CIC	23152	MSKCC	GRCh37	19	42796883	42796883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	352	866	2	ENST00000575354.2:c.3347del	p.Pro1116GlnfsTer45	p.P1116Qfs*45	ENST00000575354	NM_015125.3	1114	gCc/gc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	31	400	2	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	87	297	2	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	33	162	1	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	320	702	2	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069060	5069060	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	100	240	0	ENST00000381652.3:c.1370del	p.Asn457MetfsTer22	p.N457Mfs*22	ENST00000381652	NM_004972.3	455	acA/ac																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287469	46287469	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	165	389	0	ENST00000334344.6:c.5333del	p.Asn1778IlefsTer13	p.N1778Ifs*13	ENST00000334344	NM_152641.2	1776	ttA/tt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	262	655	3	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204842	128204842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	191	785	3	ENST00000341105.2:c.599del	p.Gly200ValfsTer18	p.G200Vfs*18	ENST00000341105	NM_032638.4	200	gGt/gt																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	303	616	2	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
INSR	3643	MSKCC	GRCh37	19	7172331	7172331	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758151117		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	203	400	1	ENST00000302850.5:c.1238G>A	p.Arg413His	p.R413H	ENST00000302850	NM_000208.2	413	cGt/cAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	159	369	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	232	323	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	233	453	14	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2131719	2131719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	103	751	0	ENST00000219476.3:c.3734G>A	p.Arg1245Gln	p.R1245Q	ENST00000219476	NM_000548.3	1245	cGg/cAg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740467	58740467	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	234	565	0	ENST00000305921.3:c.1372C>T	p.Arg458Ter	p.R458*	ENST00000305921	NM_003620.3	458	Cga/Tga																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73774681	73774682	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	32	101	0	ENST00000254810.4:c.405_406delAG	p.Arg135SerfsTer12	p.R135Sfs*12	ENST00000254810	NM_005324.3	135	agAGct/agct																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	59	378	1	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																															
ATR	545	MSKCC	GRCh37	3	142269009	142269009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	202	387	4	ENST00000350721.4:c.2941G>A	p.Val981Ile	p.V981I	ENST00000350721	NM_001184.3	981	Gtt/Att																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370927	55370927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	318	533	2	ENST00000297316.4:c.229G>A	p.Val77Met	p.V77M	ENST00000297316	NM_022454.3	77	Gtg/Atg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264985	46264985	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	215	432	0	ENST00000371998.3:c.1860del	p.Lys620AsnfsTer18	p.K620Nfs*18	ENST00000371998		619	Aaa/aa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346157	89346158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	53	184	0	ENST00000301030.4:c.6792dup	p.Ala2265ArgfsTer8	p.A2265Rfs*8	ENST00000301030	NM_001256183.1	2264	-/C																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37882874	37882874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	272	758	0	ENST00000269571.5:c.2932C>T	p.Arg978Cys	p.R978C	ENST00000269571		978	Cgc/Tgc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	108	429	1	ENST00000245479.2:c.916delG	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
GNA11	2767	MSKCC	GRCh37	19	3114952	3114952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	283	619	0	ENST00000078429.4:c.487G>A	p.Asp163Asn	p.D163N	ENST00000078429	NM_002067.2	163	Gac/Aac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946319	2946319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	384	817	0	ENST00000396946.4:c.3418G>A	p.Gly1140Ser	p.G1140S	ENST00000396946	NM_032415.4	1140	Ggc/Agc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296203	15296204	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	257	699	3	ENST00000263388.2:c.2160_2161del	p.Cys720Ter	p.C720*	ENST00000263388	NM_000435.2	720	tgTGag/tgag																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	433	496	7	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	166	753	0	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	29	451	1	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	378	825	2	ENST00000294008.3:c.1406delC	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250676	26250676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	194	571	0	ENST00000446824.2:c.158G>A	p.Arg53His	p.R53H	ENST00000446824	NM_021018.2	53	cGc/cAc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200877	67200877	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	247	526	0	ENST00000312629.5:c.870delC	p.Tyr291ThrfsTer14	p.Y291Tfs*14	ENST00000312629	NM_003952.2	289	Ccc/cc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467736	50467736	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	119	448	0	ENST00000331340.3:c.971C>G	p.Ala324Gly	p.A324G	ENST00000331340	NM_006060.4	324	gCc/gGc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165657	118165657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	185	342	0	ENST00000369448.3:c.167G>A	p.Arg56His	p.R56H	ENST00000369448	NM_017709.3	56	cGc/cAc																																																																															
ATR	545	MSKCC	GRCh37	3	142242899	142242899	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750252420		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	230	474	0	ENST00000350721.4:c.4088C>T	p.Ala1363Val	p.A1363V	ENST00000350721	NM_001184.3	1363	gCg/gTg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324463	31324463	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	103	560	0	ENST00000412585.2:c.343+2T>C		p.X115_splice	ENST00000412585	NM_005514.6	115																																																																																
POLD1	5424	MSKCC	GRCh37	19	50910259	50910259	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1043752384		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	272	614	0	ENST00000440232.2:c.1514G>A	p.Arg505His	p.R505H	ENST00000440232	NM_002691.3	505	cGc/cAc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803500	32803500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	339	638	1	ENST00000374899.4:c.659G>A	p.Arg220Gln	p.R220Q	ENST00000374899	NM_018833.2	220	cGa/cAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444933	49444933	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	139	480	4	ENST00000301067.7:c.2533del	p.Arg845GlyfsTer85	p.R845Gfs*85	ENST00000301067	NM_003482.3	845	Cgg/gg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151849873	151849873	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141718495		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	163	325	1	ENST00000262189.6:c.12443C>T	p.Pro4148Leu	p.P4148L	ENST00000262189	NM_170606.2	4148	cCg/cTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244233	5244233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	75	643	0	ENST00000357368.4:c.1249G>A	p.Val417Met	p.V417M	ENST00000357368	NM_002850.3	417	Gtg/Atg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31464435	31464435	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	81	726	0	ENST00000344624.3:c.2482delA	p.Ile828TyrfsTer7	p.I828Yfs*7	ENST00000344624		828	Ata/ta																																																																															
TET1	80312	MSKCC	GRCh37	10	70405373	70405373	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	110	528	0	ENST00000373644.4:c.2887A>G	p.Ser963Gly	p.S963G	ENST00000373644	NM_030625.2	963	Agt/Ggt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741574	17741574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	48	192	0	ENST00000250003.3:c.245G>A	p.Arg82His	p.R82H	ENST00000250003	NM_002478.4	82	cGc/cAc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94212014	94212014	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	148	348	0	ENST00000323929.3:c.431T>C	p.Leu144Ser	p.L144S	ENST00000323929	NM_005591.3	144	tTa/tCa																																																																															
ATM	472	MSKCC	GRCh37	11	108216524	108216525	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	74	367	0	ENST00000278616.4:c.8477dup	p.Asn2826LysfsTer22	p.N2826Kfs*22	ENST00000278616	NM_000051.3	2825	caa/cAaa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245921	46245921	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	101	305	0	ENST00000334344.6:c.4015C>T	p.Gln1339Ter	p.Q1339*	ENST00000334344	NM_152641.2	1339	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431576	49431576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	194	570	1	ENST00000301067.7:c.9563C>T	p.Thr3188Met	p.T3188M	ENST00000301067	NM_003482.3	3188	aCg/aTg																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50492534	50492534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	296	630	1	ENST00000394963.4:c.1430G>A	p.Arg477His	p.R477H	ENST00000394963	NM_003076.4	477	cGc/cAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112229	115112229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	136	235	1	ENST00000257566.3:c.1511C>T	p.Ala504Val	p.A504V	ENST00000257566	NM_016569.3	504	gCc/gTc																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800903	120800903	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	209	691	1	ENST00000257552.2:c.345del	p.Leu116CysfsTer3	p.L116Cfs*3	ENST00000257552	NM_002442.3	115	ggG/gg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355756	73355756	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	106	363	0	ENST00000377767.4:c.215T>A	p.Val72Glu	p.V72E	ENST00000377767	NM_014953.3	72	gTg/gAg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81606144	81606144	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	247	456	0	ENST00000298171.2:c.814C>A	p.Leu272Ile	p.L272I	ENST00000298171	NM_000369.2	272	Ctc/Atc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95572081	95572081	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	220	573	0	ENST00000343455.3:c.3027del	p.Ala1011ArgfsTer4	p.A1011Rfs*4	ENST00000343455	NM_177438.2	1009	ggG/gg																																																																															
MGA	23269	MSKCC	GRCh37	15	42053989	42053989	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	16	278	0	ENST00000219905.7:c.7451A>T	p.Gln2484Leu	p.Q2484L	ENST00000219905	NM_001164273.1	2484	cAg/cTg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43771722	43771722	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	377	517	1	ENST00000382044.4:c.661A>T	p.Ile221Phe	p.I221F	ENST00000382044	NM_001141980.1	221	Att/Ttt																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041606	14041606	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	226	462	0	ENST00000311895.7:c.2153T>A	p.Leu718His	p.L718H	ENST00000311895	NM_005236.2	718	cTc/cAc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641061	23641061	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	126	742	0	ENST00000261584.4:c.2414T>C	p.Val805Ala	p.V805A	ENST00000261584	NM_024675.3	805	gTc/gCc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822112	72822112	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	37	500	0	ENST00000268489.5:c.10063C>A	p.Leu3355Met	p.L3355M	ENST00000268489	NM_006885.3	3355	Ctg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828399	72828399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	256	578	0	ENST00000268489.5:c.8182G>A	p.Ala2728Thr	p.A2728T	ENST00000268489	NM_006885.3	2728	Gct/Act																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830402	72830402	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	25	340	0	ENST00000268489.5:c.6179C>A	p.Ser2060Tyr	p.S2060Y	ENST00000268489	NM_006885.3	2060	tCc/tAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350806	89350806	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1179	241	955	0	ENST00000301030.4:c.2144A>G	p.Glu715Gly	p.E715G	ENST00000301030	NM_001256183.1	715	gAa/gGa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16062155	16062157	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	286	517	0	ENST00000268712.3:c.649_651del	p.Pro217del	p.P217del	ENST00000268712	NM_006311.3	217	CCT/-																																																																															
BRCA1	672	MSKCC	GRCh37	17	41215948	41215948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	143	355	0	ENST00000357654.3:c.5095C>T	p.Arg1699Trp	p.R1699W	ENST00000357654	NM_007294.3	1699	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437588	56437588	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	172	450	0	ENST00000407977.2:c.874C>A	p.His292Asn	p.H292N	ENST00000407977		292	Cat/Aat																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66525011	66525011	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	97	249	0	ENST00000358598.2:c.770A>T	p.Glu257Val	p.E257V	ENST00000358598	NM_212471.2	257	gAg/gTg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753479	42753479	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	48	700	0	ENST00000222329.4:c.785del	p.Pro262LeufsTer9	p.P262Lfs*9	ENST00000222329	NM_006494.2	262	cCt/ct																																																																															
CIC	23152	MSKCC	GRCh37	19	42796772	42796772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	320	768	0	ENST00000575354.2:c.3230G>A	p.Ser1077Asn	p.S1077N	ENST00000575354	NM_015125.3	1077	aGt/aAt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39214661	39214661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	134	564	0	ENST00000402219.2:c.3463C>T	p.Pro1155Ser	p.P1155S	ENST00000402219	NM_005633.3	1155	Cca/Tca																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46611734	46611734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	289	661	1	ENST00000263734.3:c.2548G>A	p.Val850Met	p.V850M	ENST00000263734	NM_001430.4	850	Gtg/Atg																																																																															
CASP8	841	MSKCC	GRCh37	2	202149611	202149611	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	256	455	0	ENST00000358485.4:c.1052T>A	p.Ile351Asn	p.I351N	ENST00000358485	NM_001080125.1	351	aTc/aAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212587118	212587118	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs74898139		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	136	325	0	ENST00000342788.4:c.883C>T	p.His295Tyr	p.H295Y	ENST00000342788	NM_005235.2	295	Cat/Tat																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538286	9538286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	233	515	1	ENST00000353224.5:c.1712G>A	p.Ser571Asn	p.S571N	ENST00000353224	NM_177990.2	571	aGt/aAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790011	40790011	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	228	493	0	ENST00000373198.4:c.2720G>T	p.Gly907Val	p.G907V	ENST00000373198	NM_133170.3	907	gGg/gTg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46268568	46268568	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	112	268	0	ENST00000371998.3:c.2953+2T>C		p.X985_splice	ENST00000371998		985																																																																																
RTEL1	51750	MSKCC	GRCh37	20	62292834	62292834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	135	264	0	ENST00000508582.2:c.286G>A	p.Ala96Thr	p.A96T	ENST00000508582		96	Gct/Act																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30648436	30648436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	122	455	1	ENST00000359013.4:c.61G>A	p.Ala21Thr	p.A21T	ENST00000359013	NM_001024847.2	21	Gcc/Acc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138478152	138478152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	173	395	0	ENST00000289153.2:c.34G>A	p.Ala12Thr	p.A12T	ENST00000289153	NM_006219.2	12	Gca/Aca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178947131	178947131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	177	315	0	ENST00000263967.3:c.2567C>A	p.Thr856Asn	p.T856N	ENST00000263967	NM_006218.2	856	aCt/aAt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1955081	1955081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	340	739	0	ENST00000382891.5:c.2168G>A	p.Ser723Asn	p.S723N	ENST00000382891	NM_133335.3	723	aGc/aAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244200	153244200	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	43	456	1	ENST00000281708.4:c.1957del	p.Thr653ArgfsTer8	p.T653Rfs*8	ENST00000281708	NM_033632.3	653	Acg/cg																																																																															
TERT	7015	MSKCC	GRCh37	5	1264594	1264594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	284	654	1	ENST00000310581.5:c.2768C>T	p.Pro923Leu	p.P923L	ENST00000310581	NM_198253.2	923	cCg/cTg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31421419	31421419	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	60	487	0	ENST00000344624.3:c.3485T>C	p.Leu1162Ser	p.L1162S	ENST00000344624		1162	tTa/tCa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871174	35871174	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	61	301	0	ENST00000303115.3:c.399del	p.Phe133LeufsTer3	p.F133Lfs*3	ENST00000303115	NM_002185.3	132	ccT/cc																																																																															
IRF4	3662	MSKCC	GRCh37	6	395919	395919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	169	395	0	ENST00000380956.4:c.476C>A	p.Pro159His	p.P159H	ENST00000380956	NM_001195286.1	159	cCt/cAt																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816536	32816536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	389	684	1	ENST00000354258.4:c.1639C>T	p.Arg547Cys	p.R547C	ENST00000354258	NM_000593.5	547	Cgc/Tgc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2983866	2983866	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	318	616	0	ENST00000396946.4:c.664A>G	p.Ser222Gly	p.S222G	ENST00000396946	NM_032415.4	222	Agc/Ggc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836296	151836296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	240	447	0	ENST00000262189.6:c.14509G>A	p.Ala4837Thr	p.A4837T	ENST00000262189	NM_170606.2	4837	Gcg/Acg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38315000	38315000	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200766494		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	365	674	0	ENST00000425967.3:c.64G>A	p.Gly22Arg	p.G22R	ENST00000425967	NM_001174067.1	22	Gga/Aga																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104574	69104574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	346	670	0	ENST00000288368.4:c.4418T>C	p.Met1473Thr	p.M1473T	ENST00000288368	NM_024870.2	1473	aTg/aCg																																																																															
TEK	7010	MSKCC	GRCh37	9	27204926	27204926	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	30	378	0	ENST00000380036.4:c.2232del	p.Lys745ArgfsTer5	p.K745Rfs*5	ENST00000380036	NM_000459.3	743	Ggg/gg																																																																															
FANCC	2176	MSKCC	GRCh37	9	97864065	97864065	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	54	608	0	ENST00000289081.3:c.1601A>C	p.Asn534Thr	p.N534T	ENST00000289081	NM_000136.2	534	aAt/aCt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209366	98209366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	185	502	0	ENST00000331920.6:c.4172G>A	p.Arg1391Gln	p.R1391Q	ENST00000331920	NM_000264.3	1391	cGg/cAg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900369	101900371	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	AAG	AAG	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	79	219	0	ENST00000374994.4:c.803_805del	p.Lys268_Asp269delinsAsn	p.K268_D269delinsN	ENST00000374994	NM_004612.2	268	aAAGac/aac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395216	139395216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	167	788	1	ENST00000277541.6:c.5722G>A	p.Ala1908Thr	p.A1908T	ENST00000277541	NM_017617.3	1908	Gcc/Acc																																																																															
ARAF	369	MSKCC	GRCh37	X	47428988	47428988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	147	308	0	ENST00000377045.4:c.1351G>A	p.Ala451Thr	p.A451T	ENST00000377045	NM_001654.4	451	Gcc/Acc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53246353	53246353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	35	271	0	ENST00000375401.3:c.629G>A	p.Gly210Asp	p.G210D	ENST00000375401	NM_004187.3	210	gGc/gAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411979	63411979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	257	370	0	ENST00000330258.3:c.1188G>T	p.Glu396Asp	p.E396D	ENST00000330258	NM_152424.3	396	gaG/gaT																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696438	47696438	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	199	567	0	ENST00000347630.2:c.385A>G	p.Lys129Glu	p.K129E	ENST00000347630	NM_001007230.1	129	Aaa/Gaa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385152	41385152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	190	632	1	ENST00000373198.4:c.809G>A	p.Arg270His	p.R270H	ENST00000373198	NM_133170.3	270	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579477	7579477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	254	715	0	ENST00000269305.4:c.210del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	70	gcT/gc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827820	72827821	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	209	708	0	ENST00000268489.5:c.8760dup	p.Ala2921CysfsTer19	p.A2921Cfs*19	ENST00000268489	NM_006885.3	2920	-/T																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249350	110249350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	365	1114	0	ENST00000374672.4:c.1223C>T	p.Thr408Ile	p.T408I	ENST00000374672	NM_004235.4	408	aCa/aTa																																																																															
ATM	472	MSKCC	GRCh37	11	108121565	108121566	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031268-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			570	168	534	0	ENST00000278616.4:c.1375dup	p.Leu459ProfsTer28	p.L459Pfs*28	ENST00000278616	NM_000051.3	458	tgc/tgCc																																																																															
BARD1	580	MSKCC	GRCh37	2	215645415	215645415	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031268-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			834	273	777	0	ENST00000260947.4:c.1183C>A	p.Pro395Thr	p.P395T	ENST00000260947	NM_000465.2	395	Cca/Aca																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622162	1622162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	74	384	0	ENST00000344749.5:c.713C>T	p.Pro238Leu	p.P238L	ENST00000344749	NM_001136139.2	238	cCc/cTc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372040	45372040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	73	327	0	ENST00000262160.6:c.1129C>T	p.Pro377Ser	p.P377S	ENST00000262160	NM_005901.5	377	Cca/Tca																																																																															
ROS1	6098	MSKCC	GRCh37	6	117686267	117686267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	38	230	1	ENST00000368508.3:c.3074G>A	p.Gly1025Glu	p.G1025E	ENST00000368508	NM_002944.2	1025	gGa/gAa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58701074	58701074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	87	406	0	ENST00000305921.3:c.665C>T	p.Pro222Leu	p.P222L	ENST00000305921	NM_003620.3	222	cCc/cTc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136004	64136004	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	91	460	0	ENST00000334205.4:c.1265T>G	p.Phe422Cys	p.F422C	ENST00000334205	NM_003942.2	422	tTt/tGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445230	49445230	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201896284		P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	83	571	2	ENST00000301067.7:c.2236C>T	p.Arg746Trp	p.R746W	ENST00000301067	NM_003482.3	746	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579312	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	115	312	1	ENST00000269305.4:c.375_375+1delinsAA		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
TMPRSS2	7113	MSKCC	GRCh37	21	42866441	42866441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	98	622	0	ENST00000398585.3:c.191C>T	p.Pro64Leu	p.P64L	ENST00000398585	NM_001135099.1	64	cCc/cTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	60	230	0				ENST00000310581	NM_198253.2																																																																																	
STK19	8859	MSKCC	GRCh37	6	31940093	31940093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	78	432	0	ENST00000375331.2:c.235G>A	p.Glu79Lys	p.E79K	ENST00000375331	NM_004197.1	79	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16263863	16263864	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	83	447	1	ENST00000375759.3:c.10232_10233delinsAA	p.Arg3411Lys	p.R3411K	ENST00000375759	NM_015001.2	3411	aGG/aAA																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46532596	46532596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	66	255	0	ENST00000262741.5:c.482C>T	p.Ser161Phe	p.S161F	ENST00000262741	NM_003629.3	161	tCc/tTc																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551637	150551637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	71	310	0	ENST00000369026.2:c.370G>A	p.Glu124Lys	p.E124K	ENST00000369026	NM_021960.4	124	Gag/Aag																																																																															
RET	5979	MSKCC	GRCh37	10	43606815	43606816	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	94	517	1	ENST00000355710.3:c.1424_1425delinsAA	p.Arg475Gln	p.R475Q	ENST00000355710	NM_020975.4	475	cGG/cAA																																																																															
RET	5979	MSKCC	GRCh37	10	43615126	43615126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	114	481	1	ENST00000355710.3:c.2540C>T	p.Thr847Ile	p.T847I	ENST00000355710	NM_020975.4	847	aCc/aTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342599	118342599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	46	160	0	ENST00000534358.1:c.725C>T	p.Ser242Leu	p.S242L	ENST00000534358	NM_005933.3	242	tCa/tTa																																																																															
CBL	867	MSKCC	GRCh37	11	119155963	119155963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	91	412	0	ENST00000264033.4:c.1628C>T	p.Pro543Leu	p.P543L	ENST00000264033	NM_005188.3	543	cCa/cTa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748789	43748790	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	94	613	1	ENST00000382044.4:c.2016_2017delinsTT	p.Pro673Ser	p.P673S	ENST00000382044	NM_001141980.1	672	atCCct/atTTct																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934839	9934839	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	85	422	0	ENST00000330684.3:c.1451A>T	p.Lys484Met	p.K484M	ENST00000330684	NM_001134407.1	484	aAg/aTg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23649442	23649442	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	51	222	0	ENST00000261584.4:c.57G>C	p.Glu19Asp	p.E19D	ENST00000261584	NM_024675.3	19	gaG/gaC																																																																															
CBFB	865	MSKCC	GRCh37	16	67132631	67132631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	92	372	0	ENST00000412916.2:c.514C>T	p.Pro172Ser	p.P172S	ENST00000412916		172	Cct/Tct																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992456	72992456	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	88	611	0	ENST00000268489.5:c.1589T>G	p.Ile530Ser	p.I530S	ENST00000268489	NM_006885.3	530	aTt/aGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29687598	29687598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	94	458	0	ENST00000358273.4:c.8254G>A	p.Glu2752Lys	p.E2752K	ENST00000358273	NM_001042492.2	2752	Gaa/Aaa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245092	41245092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	94	637	0	ENST00000357654.3:c.2456C>T	p.Ser819Phe	p.S819F	ENST00000357654	NM_007294.3	819	tCc/tTc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39584495	39584496	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	51	218	0	ENST00000262039.4:c.1160_1161delinsTT	p.Ala387Val	p.A387V	ENST00000262039	NM_002647.2	387	gCC/gTT																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919719	96919719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	140	342	0	ENST00000258439.3:c.544G>A	p.Gly182Arg	p.G182R	ENST00000258439	NM_001193304.2	182	Gga/Aga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164277	47164277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	57	322	0	ENST00000409792.3:c.1849C>T	p.Pro617Ser	p.P617S	ENST00000409792	NM_014159.6	617	Cca/Tca																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445016	89445016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	60	316	1	ENST00000336596.2:c.1336G>A	p.Asp446Asn	p.D446N	ENST00000336596	NM_005233.5	446	Gat/Aat																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1961237	1961237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	75	298	0	ENST00000382891.5:c.3025G>A	p.Asp1009Asn	p.D1009N	ENST00000382891	NM_133335.3	1009	Gat/Aat																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638204	176638204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	90	463	0	ENST00000439151.2:c.2804C>T	p.Ser935Phe	p.S935F	ENST00000439151	NM_022455.4	935	tCt/tTt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066608	94066608	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	62	357	0	ENST00000369303.4:c.1151G>C	p.Ser384Thr	p.S384T	ENST00000369303	NM_004440.3	384	aGt/aCt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023060	150023060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	70	558	0	ENST00000253339.5:c.203C>T	p.Pro68Leu	p.P68L	ENST00000253339		68	cCa/cTa																																																																															
EZH2	2146	MSKCC	GRCh37	7	148515111	148515111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	64	354	0	ENST00000320356.2:c.1098C>A	p.Asn366Lys	p.N366K	ENST00000320356	NM_004456.4	366	aaC/aaA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151882704	151882704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	17	263	0	ENST00000262189.6:c.5021G>A	p.Arg1674Lys	p.R1674K	ENST00000262189	NM_170606.2	1674	aGa/aAa																																																																															
LYN	4067	MSKCC	GRCh37	8	56912066	56912066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	108	538	1	ENST00000519728.1:c.1294C>T	p.Leu432Phe	p.L432F	ENST00000519728	NM_002350.3	432	Ctc/Ttc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98220410	98220410	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	80	372	0	ENST00000331920.6:c.3053G>A	p.Trp1018Ter	p.W1018*	ENST00000331920	NM_000264.3	1018	tGg/tAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76874407	76874407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	84	199	0	ENST00000373344.5:c.5315C>T	p.Ser1772Phe	p.S1772F	ENST00000373344	NM_000489.3	1772	tCc/tTc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11182133	11182133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1429	88	537	3	ENST00000361445.4:c.6713G>A	p.Gly2238Asp	p.G2238D	ENST00000361445	NM_004958.3	2238	gGc/gAc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15378248	15378248	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	44	598	0	ENST00000263377.2:c.538G>T	p.Gly180Ter	p.G180*	ENST00000263377	NM_058243.2	180	Gga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0035123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	64	742	0	ENST00000269305.4:c.497C>G	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tGa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111498	8111499	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	88	575	0	ENST00000346208.3:c.985dup	p.Arg329LysfsTer23	p.R329Kfs*23	ENST00000346208		328	-/A																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0035217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	73	272	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0035217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	253	561	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	84	191	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057627	180057627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	272	707	0	ENST00000261937.6:c.328G>A	p.Val110Ile	p.V110I	ENST00000261937	NM_182925.4	110	Gtc/Atc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711993	89711993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	140	275	0	ENST00000371953.3:c.611C>T	p.Pro204Leu	p.P204L	ENST00000371953	NM_000314.4	204	cCa/cTa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73336253	73336253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	39	147	0	ENST00000377767.4:c.2150C>A	p.Thr717Lys	p.T717K	ENST00000377767	NM_014953.3	717	aCa/aAa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989562	212989562	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	56	253	0	ENST00000342788.4:c.149G>T	p.Arg50Leu	p.R50L	ENST00000342788	NM_005235.2	50	cGc/cTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944557	40944557	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	140	351	0	ENST00000373198.4:c.1945C>A	p.Pro649Thr	p.P649T	ENST00000373198	NM_133170.3	649	Ccc/Acc																																																																															
LYN	4067	MSKCC	GRCh37	8	56912090	56912090	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	644	498	0	ENST00000519728.1:c.1320del	p.Ile442PhefsTer11	p.I442Ffs*11	ENST00000519728	NM_002350.3	440	Ggg/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0035268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	47	245	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	14	400	0	ENST00000263967.3:c.3012G>A	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577069	7577069	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55819519		P-0035268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	9	618	1	ENST00000269305.4:c.869G>A	p.Arg290His	p.R290H	ENST00000269305	NM_001126112.2	290	cGc/cAc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061288	38061288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	62	472	2	ENST00000250448.2:c.701C>T	p.Ser234Phe	p.S234F	ENST00000250448	NM_004496.3	234	tCc/tTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177896	56177896	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	42	335	0	ENST00000399503.3:c.2869C>T	p.Gln957Ter	p.Q957*	ENST00000399503	NM_005921.1	957	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	9	293	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438532	49438532	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	204	430	3	ENST00000301067.7:c.4958del	p.Gly1653ValfsTer69	p.G1653Vfs*69	ENST00000301067	NM_003482.3	1653	gGt/gt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118673	115118692	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATGAAACTTACAAATCCATG	ATGAAACTTACAAATCCATG	-			P-0035274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	142	325	0	ENST00000257566.3:c.649_657+11del		p.X217_splice	ENST00000257566	NM_016569.3	217																																																																																
FLT3	2322	MSKCC	GRCh37	13	28608129	28608129	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0035274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	81	378	0	ENST00000241453.7:c.1838-1G>C		p.X613_splice	ENST00000241453	NM_004119.2	613																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31449456	31449456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	138	393	1	ENST00000344624.3:c.2753C>T	p.Ser918Phe	p.S918F	ENST00000344624		918	tCt/tTt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786457	135786457	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	150	350	3	ENST00000298552.3:c.1073C>A	p.Pro358His	p.P358H	ENST00000298552	NM_001162426.1	358	cCt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	133	483	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	149	675	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	183	722	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180459	94180459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	164	692	0	ENST00000323929.3:c.1709G>A	p.Arg570Lys	p.R570K	ENST00000323929	NM_005591.3	570	aGa/aAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29687583	29687583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	93	627	0	ENST00000358273.4:c.8239G>A	p.Asp2747Asn	p.D2747N	ENST00000358273	NM_001042492.2	2747	Gat/Aat																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546725	9546725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	72	345	1	ENST00000353224.5:c.1297C>T	p.Arg433Trp	p.R433W	ENST00000353224	NM_177990.2	433	Cgg/Tgg																																																																															
RAC2	5880	MSKCC	GRCh37	22	37622769	37622769	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	205	813	0	ENST00000249071.6:c.523G>T	p.Ala175Ser	p.A175S	ENST00000249071	NM_002872.4	175	Gcc/Tcc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781645	9781645	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	68	680	0	ENST00000377346.4:c.1955G>T	p.Arg652Leu	p.R652L	ENST00000377346	NM_005026.3	652	cGc/cTc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937868	36937868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	173	973	0	ENST00000361632.4:c.968C>T	p.Pro323Leu	p.P323L	ENST00000361632		323	cCc/cTc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100792	8100792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	59	611	0	ENST00000346208.3:c.766C>T	p.Arg256Trp	p.R256W	ENST00000346208		256	Cgg/Tgg																																																																															
WT1	7490	MSKCC	GRCh37	11	32449596	32449596	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	93	692	0	ENST00000332351.3:c.778C>T	p.Gln260Ter	p.Q260*	ENST00000332351	NM_024426.4	260	Cag/Tag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	359999	359999	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	198	766	1	ENST00000262320.3:c.1090G>T	p.Gly364Trp	p.G364W	ENST00000262320	NM_003502.3	364	Ggg/Tgg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223335	2223335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	136	736	0	ENST00000326181.6:c.947G>T	p.Arg316Leu	p.R316L	ENST00000326181	NM_032271.2	316	cGc/cTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845809	72845809	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	57	592	0	ENST00000268489.5:c.3658G>C	p.Glu1220Gln	p.E1220Q	ENST00000268489	NM_006885.3	1220	Gag/Cag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214701	36214701	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	56	698	0	ENST00000222270.7:c.3127C>G	p.Pro1043Ala	p.P1043A	ENST00000222270	NM_014727.1	1043	Cca/Gca																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505431	25505431	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	112	650	1	ENST00000264709.3:c.327delG	p.Gln110ArgfsTer52	p.Q110Rfs*52	ENST00000264709	NM_175629.2	109	ggG/gg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30648460	30648460	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	52	439	0	ENST00000359013.4:c.85C>G	p.Gln29Glu	p.Q29E	ENST00000359013	NM_001024847.2	29	Cag/Gag																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957850	1957850	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	163	674	0	ENST00000382891.5:c.2816A>T	p.Tyr939Phe	p.Y939F	ENST00000382891	NM_133335.3	939	tAc/tTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151896469	151896469	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	42	430	0	ENST00000262189.6:c.4168G>C	p.Gly1390Arg	p.G1390R	ENST00000262189	NM_170606.2	1390	Gga/Cga																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346399	152346399	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	86	615	0	ENST00000359321.1:c.171G>T	p.Met57Ile	p.M57I	ENST00000359321	NM_005431.1	57	atG/atT																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29207488	29207488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	70	337	0	ENST00000240100.2:c.308C>T	p.Ser103Leu	p.S103L	ENST00000240100	NM_001394.6	103	tCg/tTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95574237	95574242	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTAT	CAGTAT	A			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	63	333	0	ENST00000343455.3:c.2625_2630delinsT	p.Tyr876CysfsTer5	p.Y876Cfs*5	ENST00000343455	NM_177438.2	875	gcATACTGt/gcTt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575470	64575470	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	213	608	0	ENST00000337652.1:c.562T>A	p.Trp188Arg	p.W188R	ENST00000337652	NM_130803.2	188	Tgg/Agg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164937	47164937	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	76	297	0	ENST00000409792.3:c.1189G>T	p.Glu397Ter	p.E397*	ENST00000409792	NM_014159.6	397	Gaa/Taa																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288369	33288369	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0035279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	141	361	0	ENST00000374542.5:c.1040-1G>A		p.X347_splice	ENST00000374542	NM_001141970.1	347																																																																																
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0035280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	213	630	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																															
CUL3	8452	MSKCC	GRCh37	2	225360568	225360568	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	43	162	0	ENST00000264414.4:c.1823G>C	p.Arg608Thr	p.R608T	ENST00000264414	NM_003590.4	608	aGa/aCa																																																																															
WT1	7490	MSKCC	GRCh37	11	32456342	32456342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	108	1031	2	ENST00000332351.3:c.550C>A	p.Pro184Thr	p.P184T	ENST00000332351	NM_024426.4	184	Ccg/Acg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004226	150004226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	57	257	1	ENST00000253339.5:c.1999G>A	p.Glu667Lys	p.E667K	ENST00000253339		667	Gaa/Aaa																																																																															
MET	4233	MSKCC	GRCh37	7	116411682	116411682	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1134	200	752	0	ENST00000397752.3:c.2861G>A	p.Trp954Ter	p.W954*	ENST00000397752	NM_000245.2	954	tGg/tAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0035287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	32	594	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434768	49434768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	37	574	0	ENST00000301067.7:c.6785G>T	p.Gly2262Val	p.G2262V	ENST00000301067	NM_003482.3	2262	gGg/gTg																																																																															
MET	4233	MSKCC	GRCh37	7	116411865	116411901	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CCGTCTTTAACAAGCTCTTTCTTTCTCTCTGTTTTAA	CCGTCTTTAACAAGCTCTTTCTTTCTCTCTGTTTTAA	-			P-0035293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	71	816	0	ENST00000397752.3:c.2888-38_2888-2del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
MET	4233	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	C			P-0035293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	27	630	1	ENST00000397752.3:c.3028+3A>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	525	418	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	277	585	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	197	397	0	ENST00000368323.3:c.270G>C	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atC																																																																															
TERT	7015	MSKCC	GRCh37	5	1260674	1260674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	84	477	1	ENST00000310581.5:c.2885G>A	p.Arg962His	p.R962H	ENST00000310581	NM_198253.2	962	cGc/cAc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464947	120464947	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	195	398	0	ENST00000256646.2:c.5125C>G	p.Leu1709Val	p.L1709V	ENST00000256646	NM_024408.3	1709	Ctc/Gtc																																																																															
WT1	7490	MSKCC	GRCh37	11	32449599	32449599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	200	507	0	ENST00000332351.3:c.775C>A	p.Gln259Lys	p.Q259K	ENST00000332351	NM_024426.4	259	Cag/Aag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18747471	18747471	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	208	307	0	ENST00000266497.5:c.3934del	p.Thr1312GlnfsTer10	p.T1312Qfs*10	ENST00000266497		1311	cAa/ca																																																																															
MGA	23269	MSKCC	GRCh37	15	42005607	42005607	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	173	356	0	ENST00000219905.7:c.3343G>T	p.Gly1115Ter	p.G1115*	ENST00000219905	NM_001164273.1	1115	Gga/Tga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476343	88476343	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	232	492	0	ENST00000360948.2:c.1789C>G	p.His597Asp	p.H597D	ENST00000360948	NM_001012338.2	597	Cat/Gat																																																																															
ERF	2077	MSKCC	GRCh37	19	42753089	42753089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	230	572	0	ENST00000222329.4:c.1175G>T	p.Gly392Val	p.G392V	ENST00000222329	NM_006494.2	392	gGg/gTg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719221	61719221	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	179	342	0	ENST00000401558.2:c.1836T>A	p.Asp612Glu	p.D612E	ENST00000401558	NM_003400.3	612	gaT/gaA																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155021	55155021	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	147	377	0	ENST00000257290.5:c.2730G>T	p.Lys910Asn	p.K910N	ENST00000257290	NM_006206.4	910	aaG/aaT																																																																															
KIT	3815	MSKCC	GRCh37	4	55595501	55595501	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	65	326	0	ENST00000288135.5:c.1991G>T	p.Gly664Val	p.G664V	ENST00000288135	NM_000222.2	664	gGg/gTg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876106	35876106	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	256	377	0	ENST00000303115.3:c.898C>A	p.Pro300Thr	p.P300T	ENST00000303115	NM_002185.3	300	Cct/Act																																																																															
MSH3	4437	MSKCC	GRCh37	5	80071569	80071569	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	141	294	0	ENST00000265081.6:c.2310G>T	p.Lys770Asn	p.K770N	ENST00000265081	NM_002439.4	770	aaG/aaT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376678	8376678	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	513	373	0	ENST00000356435.5:c.4435C>A	p.Leu1479Ile	p.L1479I	ENST00000356435		1479	Ctc/Atc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465658	8465659	+	stop_gained	Nonsense_Mutation	DNP	AG	AG	TT			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	365	378	0	ENST00000356435.5:c.3521_3522delinsAA	p.Ser1174Ter	p.S1174*	ENST00000356435		1174	tCT/tAA																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8733793	8733794	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	77	386	0	ENST00000356435.5:c.50_51delinsTT	p.Arg17Leu	p.R17L	ENST00000356435		17	cGC/cTT																																																																															
TEK	7010	MSKCC	GRCh37	9	27203076	27203076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	260	419	0	ENST00000380036.4:c.2168C>A	p.Pro723Gln	p.P723Q	ENST00000380036	NM_000459.3	723	cCa/cAa																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1314936	1314936	+	downstream_gene_variant	3'Flank	SNP	A	A	T			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	238	431	0				ENST00000381566																																																																																		
GATA1	2623	MSKCC	GRCh37	X	48652345	48652345	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	310	811	0	ENST00000376670.3:c.1016G>T	p.Gly339Val	p.G339V	ENST00000376670	NM_002049.3	339	gGg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	53	519	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0035323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	47	525	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	44	433	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244652	46244652	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	62	535	0	ENST00000334344.6:c.2746C>T	p.Gln916Ter	p.Q916*	ENST00000334344	NM_152641.2	916	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	161	627	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259439	55259439	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs397517126		P-0035324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	908	454	0	ENST00000275493.2:c.2497T>G	p.Leu833Val	p.L833V	ENST00000275493	NM_005228.3	833	Ttg/Gtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0035324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	1152	593	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022824	31022824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	58	532	0	ENST00000375687.4:c.2309C>T	p.Ser770Leu	p.S770L	ENST00000375687	NM_015338.5	770	tCa/tTa																																																																															
TP63	8626	MSKCC	GRCh37	3	189612157	189612157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	64	602	0	ENST00000264731.3:c.1909C>T	p.Arg637Cys	p.R637C	ENST00000264731	NM_003722.4	637	Cgt/Tgt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40497608	40497608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	79	638	0	ENST00000264657.5:c.341G>A	p.Arg114His	p.R114H	ENST00000264657	NM_139276.2	114	cGc/cAc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99440002	99440002	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	52	348	0	ENST00000268035.6:c.970T>A	p.Cys324Ser	p.C324S	ENST00000268035	NM_000875.3	324	Tgt/Agt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969782	81969782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	44	461	0	ENST00000359376.3:c.2851G>T	p.Asp951Tyr	p.D951Y	ENST00000359376	NM_002661.3	951	Gac/Tac																																																																															
CIC	23152	MSKCC	GRCh37	19	42793352	42793352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	91	695	0	ENST00000575354.2:c.1154C>T	p.Ser385Leu	p.S385L	ENST00000575354	NM_015125.3	385	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0035326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	298	591	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0035326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	246	524	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	231	435	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001374	150001376	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs753305883		P-0035326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	240	666	0	ENST00000253339.5:c.2228_2230del	p.Leu743del	p.L743del	ENST00000253339		743	cTTCga/cga																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479833	67479833	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	340	499	1	ENST00000327367.4:c.1140G>A	p.Trp380Ter	p.W380*	ENST00000327367	NM_005902.3	380	tgG/tgA																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45371711	45371711	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	160	479	0	ENST00000262160.6:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000262160	NM_005901.5	427	cGa/cAa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	193	370	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65344781	65344781	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0035366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	60	247	0	ENST00000342505.4:c.256A>T	p.Lys86Ter	p.K86*	ENST00000342505	NM_002227.2	86	Aag/Tag																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14024632	14024632	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	226	332	0	ENST00000311895.7:c.858G>C	p.Gln286His	p.Q286H	ENST00000311895	NM_005236.2	286	caG/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0035367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	456	745	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	240	560	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112174091	112174094	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0035367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	92	351	0	ENST00000257430.4:c.2802_2805delTTAC	p.Tyr935IlefsTer19	p.Y935Ifs*19	ENST00000257430	NM_000038.5	934	ACTTac/ac																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31380572	31380572	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	53	385	0	ENST00000328111.2:c.1062A>T	p.Gln354His	p.Q354H	ENST00000328111	NM_006892.3	354	caA/caT																																																																															
APC	324	MSKCC	GRCh37	5	112175522	112175577	+	frameshift_variant	Frame_Shift_Del	DEL	AGTGGAATGGTAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACA	AGTGGAATGGTAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACA	-			P-0035367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	58	419	0	ENST00000257430.4:c.4232_4287del	p.Ser1411AsnfsTer8	p.S1411Nfs*8	ENST00000257430	NM_000038.5	1411	AGTGGAATGGTAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACAa/a																																																																															
NSD1	64324	MSKCC	GRCh37	5	176666812	176666812	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	17	279	0	ENST00000439151.2:c.4248T>A	p.Asn1416Lys	p.N1416K	ENST00000439151	NM_022455.4	1416	aaT/aaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	285	567	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	72	367	1	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986988	36986988	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	174	482	1	ENST00000354822.5:c.701A>T	p.Gln234Leu	p.Q234L	ENST00000354822	NM_001079668.2	234	cAg/cTg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683183	88683183	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	58	359	0	ENST00000372037.3:c.1393C>G	p.Pro465Ala	p.P465A	ENST00000372037	NM_004329.2	465	Ccg/Gcg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118348741	118348741	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	67	409	1	ENST00000534358.1:c.3394A>G	p.Ile1132Val	p.I1132V	ENST00000534358	NM_005933.3	1132	Att/Gtt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	447	538	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	335	716	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575671	48575671	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	159	256	0	ENST00000342988.3:c.431C>A	p.Ser144Ter	p.S144*	ENST00000342988	NM_005359.5	144	tCa/tAa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149516579	149516579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	374	676	1	ENST00000261799.4:c.32C>T	p.Ala11Val	p.A11V	ENST00000261799	NM_002609.3	11	gCc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	396	573	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0035375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	272	706	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0035375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	164	445	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	433	464	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0035375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	379	859	1	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11015696	11015696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	283	707	0	ENST00000327064.4:c.290C>T	p.Ser97Phe	p.S97F	ENST00000327064	NM_199141.1	97	tCc/tTc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482809	67482809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	283	651	0	ENST00000327367.4:c.1213C>T	p.Gln405Ter	p.Q405*	ENST00000327367	NM_005902.3	405	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120291	70120292	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	423	911	0	ENST00000245479.2:c.1294dup	p.Tyr432LeufsTer146	p.Y432Lfs*146	ENST00000245479	NM_000346.3	431	-/T																																																																															
MALT1	10892	MSKCC	GRCh37	18	56378178	56378196	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACTGAAGGTAGTGTAAGT	CACTGAAGGTAGTGTAAGT	-			P-0035375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	124	543	0	ENST00000348428.3:c.952_958+12del		p.X318_splice	ENST00000348428	NM_006785.3	318																																																																																
RICTOR	253260	MSKCC	GRCh37	5	38962663	38962663	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	196	443	0	ENST00000357387.3:c.1592A>C	p.Asn531Thr	p.N531T	ENST00000357387	NM_152756.3	531	aAc/aCc																																																																															
SMO	6608	MSKCC	GRCh37	7	128845590	128845590	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772693769		P-0035375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	255	668	0	ENST00000249373.3:c.887G>A	p.Arg296His	p.R296H	ENST00000249373	NM_005631.4	296	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	86	449	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427899	49427899	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	348	826	0	ENST00000301067.7:c.10691del	p.Leu3564ProfsTer94	p.L3564Pfs*94	ENST00000301067	NM_003482.3	3564	cTc/cc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060867	38060868	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	442	668	0	ENST00000250448.2:c.1121dup	p.His374GlnfsTer41	p.H374Qfs*41	ENST00000250448	NM_004496.3	374	cac/caAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68849475	68849476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0035385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	381	743	0	ENST00000261769.5:c.1379_1380dup	p.Pro461TyrfsTer21	p.P461Yfs*21	ENST00000261769	NM_004360.3	460	gta/gTAta																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178501	56178501	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	84	326	0	ENST00000399503.3:c.3474del	p.Glu1159LysfsTer13	p.E1159Kfs*13	ENST00000399503	NM_005921.1	1158	ccT/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	74	418	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0035388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	107	582	1	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435306	49435306	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	114	569	1	ENST00000301067.7:c.6247C>T	p.Gln2083Ter	p.Q2083*	ENST00000301067	NM_003482.3	2083	Cag/Tag																																																																															
CBFB	865	MSKCC	GRCh37	16	67070600	67070601	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0035388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	78	297	0	ENST00000412916.2:c.226_227delGA	p.Glu76ThrfsTer6	p.E76Tfs*6	ENST00000412916		75	gGA/g																																																																															
CDH1	999	MSKCC	GRCh37	16	68857526	68857526	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	101	450	0	ENST00000261769.5:c.2161C>G	p.Leu721Val	p.L721V	ENST00000261769	NM_004360.3	721	Cta/Gta																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	112	304	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	97	438	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	70	260	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004217	150004217	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	69	371	0	ENST00000253339.5:c.2008C>T	p.Arg670Trp	p.R670W	ENST00000253339		670	Cgg/Tgg																																																																															
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	127	484	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	111	486	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	59	350	1	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	21	275	1	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39644793	39644793	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	63	267	0	ENST00000262039.4:c.2522A>G	p.Lys841Arg	p.K841R	ENST00000262039	NM_002647.2	841	aAg/aGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	106	506	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	82	263	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971292	13971292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	56	429	0	ENST00000405192.2:c.637C>T	p.Arg213Cys	p.R213C	ENST00000405192	NM_001163147.1	213	Cgc/Tgc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	108	643	2	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	108	402	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117594	70117594	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	88	539	1	ENST00000245479.2:c.66del	p.Ser23AlafsTer38	p.S23Afs*38	ENST00000245479	NM_000346.3	21	gCc/gc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121266	29121266	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	49	746	0	ENST00000328354.6:c.409C>T	p.Arg137Ter	p.R137*	ENST00000328354	NM_007194.3	137	Cga/Tga																																																																															
AXL	558	MSKCC	GRCh37	19	41743896	41743896	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	87	791	1	ENST00000301178.4:c.836delC	p.Pro279GlnfsTer18	p.P279Qfs*18	ENST00000301178	NM_021913.4	277	gaC/ga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	122	406	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612344	1612344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	134	801	1	ENST00000344749.5:c.1675G>A	p.Val559Met	p.V559M	ENST00000344749	NM_001136139.2	559	Gtg/Atg																																																																															
FANCC	2176	MSKCC	GRCh37	9	97912349	97912349	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182879858		P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	45	349	0	ENST00000289081.3:c.542C>T	p.Ala181Val	p.A181V	ENST00000289081	NM_000136.2	181	gCg/gTg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430936	181430936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	50	731	0	ENST00000325404.1:c.788C>T	p.Ala263Val	p.A263V	ENST00000325404	NM_003106.3	263	gCg/gTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	33	302	2				ENST00000310581	NM_198253.2																																																																																	
KMT2C	58508	MSKCC	GRCh37	7	151878530	151878530	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	45	608	0	ENST00000262189.6:c.6415C>T	p.Arg2139Ter	p.R2139*	ENST00000262189	NM_170606.2	2139	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210893	36210893	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	43	702	3	ENST00000222270.7:c.649del	p.Arg217GlyfsTer22	p.R217Gfs*22	ENST00000222270	NM_014727.1	215	aCc/ac																																																																															
RXRA	6256	MSKCC	GRCh37	9	137309141	137309141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	74	796	1	ENST00000481739.1:c.748G>A	p.Val250Met	p.V250M	ENST00000481739	NM_002957.4	250	Gtg/Atg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933561	36933561	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	46	647	4	ENST00000361632.4:c.1726G>A	p.Ala576Thr	p.A576T	ENST00000361632		576	Gcc/Acc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65312344	65312344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	46	430	0	ENST00000342505.4:c.1975C>T	p.Arg659Cys	p.R659C	ENST00000342505	NM_002227.2	659	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210431	36210431	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	91	621	0	ENST00000222270.7:c.424C>T	p.Arg142Ter	p.R142*	ENST00000222270	NM_014727.1	142	Cga/Tga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120480611	120480611	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	69	397	0	ENST00000256646.2:c.3206G>T	p.Arg1069Leu	p.R1069L	ENST00000256646	NM_024408.3	1069	cGg/cTg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193099332	193099332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	99	352	0	ENST00000367435.3:c.266C>A	p.Pro89His	p.P89H	ENST00000367435	NM_024529.4	89	cCt/cAt																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514056	69514056	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138132534		P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	93	584	0	ENST00000294312.3:c.625G>A	p.Val209Met	p.V209M	ENST00000294312	NM_005117.2	209	Gtg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426625	49426633	+	inframe_deletion	In_Frame_Del	DEL	GCTGCTGTT	GCTGCTGTT	-			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	41	582	1	ENST00000301067.7:c.11855_11863del	p.Gln3952_Gln3954del	p.Q3952_Q3954del	ENST00000301067	NM_003482.3	3952	cAACAGCAGCta/cta																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434351	49434351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	83	716	1	ENST00000301067.7:c.7202G>A	p.Arg2401His	p.R2401H	ENST00000301067	NM_003482.3	2401	cGc/cAc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554443	63554443	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	175	593	0	ENST00000307078.5:c.296T>C	p.Leu99Pro	p.L99P	ENST00000307078	NM_004655.3	99	cTg/cCg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2206761	2206761	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201645007		P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	91	567	0	ENST00000398665.3:c.821C>A	p.Pro274His	p.P274H	ENST00000398665	NM_032482.2	274	cCt/cAt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716287	52716287	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	21	631	0	ENST00000322088.6:c.731T>C	p.Val244Ala	p.V244A	ENST00000322088	NM_014225.5	244	gTg/gCg																																																																															
SRC	6714	MSKCC	GRCh37	20	36031619	36031619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	81	632	0	ENST00000358208.4:c.1448G>A	p.Arg483Gln	p.R483Q	ENST00000358208		483	cGg/cAg																																																																															
RAC2	5880	MSKCC	GRCh37	22	37622733	37622733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	50	681	1	ENST00000249071.6:c.559C>T	p.Arg187Cys	p.R187C	ENST00000249071	NM_002872.4	187	Cgc/Tgc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801196	1801196	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	89	799	0	ENST00000260795.2:c.325T>G	p.Cys109Gly	p.C109G	ENST00000260795		109	Tgc/Ggc																																																																															
APC	324	MSKCC	GRCh37	5	112163630	112163630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	18	233	0	ENST00000257430.4:c.1553C>T	p.Thr518Met	p.T518M	ENST00000257430	NM_000038.5	518	aCg/aTg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497191	149497192	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	42	502	0	ENST00000261799.4:c.3126dup	p.Ser1043GlnfsTer9	p.S1043Qfs*9	ENST00000261799	NM_002609.3	1042	-/C																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197242	26197242	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	190	431	0	ENST00000356476.2:c.237C>A	p.Phe79Leu	p.F79L	ENST00000356476		79	ttC/ttA																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162158	38162158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	55	471	0	ENST00000317025.8:c.2558G>A	p.Arg853Gln	p.R853Q	ENST00000317025	NM_023034.1	853	cGg/cAg																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966698	36966698	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	40	373	0	ENST00000358127.4:c.628A>G	p.Asn210Asp	p.N210D	ENST00000358127	NM_001280556.1	210	Aac/Gac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	251	608	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793008	33793010	+	inframe_deletion	In_Frame_Del	DEL	CGC	CGC	-			P-0035102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	11	100	1	ENST00000498907.2:c.311_313del	p.Gly104del	p.G104del	ENST00000498907	NM_004364.3	104	gGCGac/gac																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733218	74733218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	79	601	0	ENST00000359995.5:c.25G>A	p.Asp9Asn	p.D9N	ENST00000359995	NM_001195427.1	9	Gat/Aat																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933311	39933311	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	117	773	0	ENST00000378444.4:c.1288C>T	p.Gln430Ter	p.Q430*	ENST00000378444	NM_001123385.1	430	Cag/Tag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465542	8465542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	103	657	0	ENST00000356435.5:c.3638G>A	p.Gly1213Glu	p.G1213E	ENST00000356435		1213	gGa/gAa																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733140	74733140	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	63	592	0	ENST00000359995.5:c.103G>C	p.Glu35Gln	p.E35Q	ENST00000359995	NM_001195427.1	35	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579503	7579503	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	92	735	0	ENST00000269305.4:c.184G>T	p.Glu62Ter	p.E62*	ENST00000269305	NM_001126112.2	62	Gaa/Taa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851627	134851627	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	59	530	0	ENST00000398015.3:c.1033C>G	p.Pro345Ala	p.P345A	ENST00000398015	NM_004441.4	345	Cca/Gca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260068	16260068	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	71	519	0	ENST00000375759.3:c.7333C>T	p.Gln2445Ter	p.Q2445*	ENST00000375759	NM_015001.2	2445	Caa/Taa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8105964	8105964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	54	422	0	ENST00000346208.3:c.784G>C	p.Glu262Gln	p.E262Q	ENST00000346208		262	Gag/Cag																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112760301	112760301	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0035102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	48	254	0	ENST00000369452.4:c.970G>C	p.Glu324Gln	p.E324Q	ENST00000369452	NM_007373.3	324	Gag/Cag																																																																															
ATM	472	MSKCC	GRCh37	11	108122706	108122706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	78	454	0	ENST00000278616.4:c.1750C>A	p.Gln584Lys	p.Q584K	ENST00000278616	NM_000051.3	584	Cag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68842666	68842667	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	126	587	0	ENST00000261769.5:c.603dup	p.Val202CysfsTer7	p.V202Cfs*7	ENST00000261769	NM_004360.3	201	cct/ccTt																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46608737	46608737	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0035102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	79	628	0	ENST00000263734.3:c.2048C>A	p.Ser683Tyr	p.S683Y	ENST00000263734	NM_001430.4	683	tCt/tAt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37035134	37035134	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	44	334	0	ENST00000231790.2:c.96C>G	p.Ile32Met	p.I32M	ENST00000231790	NM_000249.3	32	atC/atG																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72890252	72890252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	87	457	1	ENST00000325599.8:c.430C>T	p.Pro144Ser	p.P144S	ENST00000325599	NM_018130.2	144	Ccg/Tcg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149498385	149498385	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	82	560	0	ENST00000261799.4:c.2829G>C	p.Glu943Asp	p.E943D	ENST00000261799	NM_002609.3	943	gaG/gaC																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858546	27858546	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	34	363	0	ENST00000359303.2:c.25C>G	p.Arg9Gly	p.R9G	ENST00000359303	NM_003535.2	9	Cgc/Ggc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555174	106555174	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	59	468	0	ENST00000369096.4:c.2291G>C	p.Arg764Thr	p.R764T	ENST00000369096	NM_001198.3	764	aGa/aCa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859228	151859228	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	88	443	1	ENST00000262189.6:c.11434G>T	p.Glu3812Ter	p.E3812*	ENST00000262189	NM_170606.2	3812	Gag/Tag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44732894	44732894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	52	441	0	ENST00000377967.4:c.97G>A	p.Glu33Lys	p.E33K	ENST00000377967	NM_021140.2	33	Gag/Aag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743943	40743943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	254	469	0	ENST00000373198.4:c.3052C>T	p.Arg1018Ter	p.R1018*	ENST00000373198	NM_133170.3	1018	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	189	373	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929041	32929041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	265	559	0	ENST00000380152.3:c.7051G>A	p.Ala2351Thr	p.A2351T	ENST00000380152		2351	Gca/Aca																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911534	101911534	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111426349		P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	62	406	0	ENST00000374994.4:c.1459C>T	p.Arg487Trp	p.R487W	ENST00000374994	NM_004612.2	487	Cgg/Tgg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259477	89259477	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200567888		P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	255	569	0	ENST00000336596.2:c.621G>T	p.Lys207Asn	p.K207N	ENST00000336596	NM_005233.5	207	aaG/aaT																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138426123	138426123	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1217537873		P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	247	420	0	ENST00000289153.2:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000289153	NM_006219.2	470	Gaa/Aaa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138453486	138453486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	236	393	0	ENST00000289153.2:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000289153	NM_006219.2	321	cGa/cAa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66242774	66242774	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151302542		P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	67	222	0	ENST00000273854.3:c.1798G>A	p.Glu600Lys	p.E600K	ENST00000273854	NM_004439.5	600	Gaa/Aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509796	187509796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	54	278	1	ENST00000441802.2:c.13717G>A	p.Glu4573Lys	p.E4573K	ENST00000441802	NM_005245.3	4573	Gaa/Aaa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591278	67591278	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	75	374	0	ENST00000274335.5:c.1776G>T	p.Lys592Asn	p.K592N	ENST00000274335		592	aaG/aaT																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15971393	15971393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	316	604	0	ENST00000268712.3:c.4556C>T	p.Ser1519Leu	p.S1519L	ENST00000268712	NM_006311.3	1519	tCg/tTg																																																																															
ATM	472	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	81	615	0	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	154	288	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112177203	112177203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	174	343	0	ENST00000257430.4:c.5912C>A	p.Ser1971Tyr	p.S1971Y	ENST00000257430	NM_000038.5	1971	tCt/tAt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740264	162740264	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756149068		P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	140	340	0	ENST00000367921.3:c.1466G>A	p.Arg489Gln	p.R489Q	ENST00000367921	NM_006182.2	489	cGa/cAa																																																																															
KIT	3815	MSKCC	GRCh37	4	55598084	55598084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	77	451	0	ENST00000288135.5:c.2281G>A	p.Glu761Lys	p.E761K	ENST00000288135	NM_000222.2	761	Gag/Aag																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126757	5126757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	165	414	0	ENST00000381652.3:c.3365G>A	p.Arg1122Gln	p.R1122Q	ENST00000381652	NM_004972.3	1122	cGa/cAa																																																																															
ATRX	546	MSKCC	GRCh37	X	76938406	76938406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	154	429	0	ENST00000373344.5:c.2342G>A	p.Arg781Gln	p.R781Q	ENST00000373344	NM_000489.3	781	cGa/cAa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117718123	117718123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	341	633	0	ENST00000368508.3:c.734G>T	p.Arg245Ile	p.R245I	ENST00000368508	NM_002944.2	245	aGa/aTa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710666	114710666	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	166	330	0	ENST00000543371.1:c.151G>T	p.Glu51Ter	p.E51*	ENST00000543371	NM_001198531.1	51	Gaa/Taa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095626	178095626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	103	545	0	ENST00000397062.3:c.1705C>T	p.Arg569Cys	p.R569C	ENST00000397062	NM_006164.4	569	Cgt/Tgt																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841000	15841000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	93	271	0	ENST00000307771.7:c.1084G>A	p.Glu362Lys	p.E362K	ENST00000307771	NM_005089.3	362	Gaa/Aaa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589618	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519838		P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	106	223	1	ENST00000274335.5:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000274335		461	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624245	89624245	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	139	216	0	ENST00000371953.3:c.19G>T	p.Glu7Ter	p.E7*	ENST00000371953	NM_000314.4	7	Gag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27059183	27059183	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	233	416	0	ENST00000324856.7:c.1820C>A	p.Ser607Ter	p.S607*	ENST00000324856	NM_006015.4	607	tCa/tAa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004349	150004349	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	317	550	0	ENST00000253339.5:c.1876C>T	p.Arg626Ter	p.R626*	ENST00000253339		626	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934864	9934864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	283	610	0	ENST00000330684.3:c.1426G>A	p.Asp476Asn	p.D476N	ENST00000330684	NM_001134407.1	476	Gac/Aac																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455151	50455151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	116	282	0	ENST00000331340.3:c.698C>T	p.Pro233Leu	p.P233L	ENST00000331340	NM_006060.4	233	cCg/cTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435088	18435088	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	301	355	0	ENST00000266497.5:c.73C>A	p.Leu25Ile	p.L25I	ENST00000266497		25	Ctc/Atc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661672	227661672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	50	601	1	ENST00000305123.5:c.1783C>T	p.Arg595Trp	p.R595W	ENST00000305123	NM_005544.2	595	Cgg/Tgg																																																																															
TET1	80312	MSKCC	GRCh37	10	70426835	70426835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	163	394	0	ENST00000373644.4:c.4495C>A	p.Leu1499Ile	p.L1499I	ENST00000373644	NM_030625.2	1499	Ctt/Att																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39609349	39609349	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201418439		P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	71	368	0	ENST00000262039.4:c.1651C>T	p.Arg551Trp	p.R551W	ENST00000262039	NM_002647.2	551	Cgg/Tgg																																																																															
POLE	5426	MSKCC	GRCh37	12	133249857	133249857	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	307	357	0	ENST00000320574.5:c.1366G>C	p.Ala456Pro	p.A456P	ENST00000320574	NM_006231.2	456	Gcc/Ccc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650879	37650879	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs191899574		P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	123	647	1	ENST00000447079.4:c.2351G>A	p.Arg784Gln	p.R784Q	ENST00000447079	NM_015083.1	784	cGa/cAa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185167750	185167750	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	85	496	0	ENST00000265026.3:c.1073C>A	p.Ser358Tyr	p.S358Y	ENST00000265026	NM_004721.4	358	tCt/tAt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	404837	404837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	116	530	0	ENST00000399788.2:c.4357G>A	p.Asp1453Asn	p.D1453N	ENST00000399788	NM_001042603.1	1453	Gat/Aat																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582935	95582935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	58	471	0	ENST00000343455.3:c.1607G>A	p.Arg536His	p.R536H	ENST00000343455	NM_177438.2	536	cGt/cAt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521884	157521884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	247	435	0	ENST00000346085.5:c.4156C>T	p.Arg1386Cys	p.R1386C	ENST00000346085	NM_020732.3	1386	Cgc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255845	16255845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	50	359	0	ENST00000375759.3:c.3110G>A	p.Arg1037Lys	p.R1037K	ENST00000375759	NM_015001.2	1037	aGa/aAa																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66520200	66520200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	287	588	0	ENST00000358598.2:c.484G>A	p.Glu162Lys	p.E162K	ENST00000358598	NM_212471.2	162	Gag/Aag																																																																															
MGA	23269	MSKCC	GRCh37	15	41961459	41961459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	304	552	0	ENST00000219905.7:c.367C>A	p.Leu123Ile	p.L123I	ENST00000219905	NM_001164273.1	123	Ctt/Att																																																																															
ATM	472	MSKCC	GRCh37	11	108165729	108165729	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	66	399	0	ENST00000278616.4:c.4852C>T	p.Arg1618Ter	p.R1618*	ENST00000278616	NM_000051.3	1618	Cga/Tga																																																																															
ROS1	6098	MSKCC	GRCh37	6	117631341	117631341	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	72	435	0	ENST00000368508.3:c.6337G>T	p.Asp2113Tyr	p.D2113Y	ENST00000368508	NM_002944.2	2113	Gat/Tat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952013	178952013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	68	475	1	ENST00000263967.3:c.3068G>A	p.Arg1023Gln	p.R1023Q	ENST00000263967	NM_006218.2	1023	cGa/cAa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980735	70980735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	43	580	0	ENST00000276594.2:c.733G>T	p.Asp245Tyr	p.D245Y	ENST00000276594	NM_024504.3	245	Gac/Tac																																																																															
PREX2	80243	MSKCC	GRCh37	8	69031691	69031691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	82	566	0	ENST00000288368.4:c.3446G>A	p.Arg1149His	p.R1149H	ENST00000288368	NM_024870.2	1149	cGc/cAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911655	134911655	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	67	381	0	ENST00000398015.3:c.2120C>A	p.Ser707Tyr	p.S707Y	ENST00000398015	NM_004441.4	707	tCt/tAt																																																																															
CBFB	865	MSKCC	GRCh37	16	67132676	67132676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	285	521	0	ENST00000412916.2:c.559C>T	p.Arg187Cys	p.R187C	ENST00000412916		187	Cgt/Tgt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152027747	152027747	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	455	771	0	ENST00000262189.6:c.328C>T	p.Arg110Ter	p.R110*	ENST00000262189	NM_170606.2	110	Cga/Tga																																																																															
PGR	5241	MSKCC	GRCh37	11	100922251	100922251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	60	378	2	ENST00000325455.5:c.2261C>A	p.Ser754Tyr	p.S754Y	ENST00000325455	NM_001202474.3	754	tCt/tAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350734	89350734	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146294483		P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1637	99	995	0	ENST00000301030.4:c.2216C>T	p.Ser739Leu	p.S739L	ENST00000301030	NM_001256183.1	739	tCg/tTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827388	72827388	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	126	861	0	ENST00000268489.5:c.9193G>T	p.Glu3065Ter	p.E3065*	ENST00000268489	NM_006885.3	3065	Gaa/Taa																																																																															
CBL	867	MSKCC	GRCh37	11	119103322	119103322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	243	510	1	ENST00000264033.4:c.360G>T	p.Glu120Asp	p.E120D	ENST00000264033	NM_005188.3	120	gaG/gaT																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749297	43749297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	425	721	0	ENST00000382044.4:c.1509G>T	p.Lys503Asn	p.K503N	ENST00000382044	NM_001141980.1	503	aaG/aaT																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465526	99465526	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	89	528	0	ENST00000268035.6:c.2351A>G	p.Asn784Ser	p.N784S	ENST00000268035	NM_000875.3	784	aAc/aGc																																																																															
TET1	80312	MSKCC	GRCh37	10	70450609	70450609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	213	377	0	ENST00000373644.4:c.5449G>A	p.Glu1817Lys	p.E1817K	ENST00000373644	NM_030625.2	1817	Gaa/Aaa																																																																															
ATRX	546	MSKCC	GRCh37	X	76907822	76907822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	56	154	0	ENST00000373344.5:c.4339G>A	p.Glu1447Lys	p.E1447K	ENST00000373344	NM_000489.3	1447	Gag/Aag																																																																															
KDR	3791	MSKCC	GRCh37	4	55956198	55956198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	86	556	0	ENST00000263923.4:c.3117G>T	p.Lys1039Asn	p.K1039N	ENST00000263923	NM_002253.2	1039	aaG/aaT																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112566	115112566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1298	142	807	0	ENST00000257566.3:c.1174G>A	p.Ala392Thr	p.A392T	ENST00000257566	NM_016569.3	392	Gcg/Acg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812165	212812165	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	45	363	0	ENST00000342788.4:c.411G>T	p.Lys137Asn	p.K137N	ENST00000342788	NM_005235.2	137	aaG/aaT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117647553	117647553	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	108	644	0	ENST00000368508.3:c.5391G>T	p.Gln1797His	p.Q1797H	ENST00000368508	NM_002944.2	1797	caG/caT																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1961360	1961360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	74	586	0	ENST00000382891.5:c.3148G>A	p.Glu1050Lys	p.E1050K	ENST00000382891	NM_133335.3	1050	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255367	16255367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	138	459	0	ENST00000375759.3:c.2632G>A	p.Val878Met	p.V878M	ENST00000375759	NM_015001.2	878	Gtg/Atg																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39321554	39321554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	156	446	0	ENST00000373001.3:c.467G>T	p.Arg156Ile	p.R156I	ENST00000373001	NM_022157.3	156	aGa/aTa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162749975	162749975	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147604927		P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	89	519	0	ENST00000367921.3:c.2507C>T	p.Thr836Met	p.T836M	ENST00000367921	NM_006182.2	836	aCg/aTg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193104684	193104684	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	130	388	0	ENST00000367435.3:c.388G>T	p.Glu130Ter	p.E130*	ENST00000367435	NM_024529.4	130	Gaa/Taa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736239	243736239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	49	336	0	ENST00000263826.5:c.808C>T	p.Arg270Cys	p.R270C	ENST00000263826	NM_005465.4	270	Cgt/Tgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711913	89711913	+	stop_gained	Nonsense_Mutation	SNP	T	T	G	rs878853012		P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	165	652	0	ENST00000371953.3:c.531T>G	p.Tyr177Ter	p.Y177*	ENST00000371953	NM_000314.4	177	taT/taG																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112769098	112769098	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	84	452	0	ENST00000369452.4:c.1377A>C	p.Lys459Asn	p.K459N	ENST00000369452	NM_007373.3	459	aaA/aaC																																																																															
WT1	7490	MSKCC	GRCh37	11	32414232	32414232	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	230	441	0	ENST00000332351.3:c.1319G>T	p.Arg440Ile	p.R440I	ENST00000332351	NM_024426.4	440	aGa/aTa																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205313	61205313	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	305	562	0	ENST00000301761.2:c.253C>A	p.Leu85Ile	p.L85I	ENST00000301761	NM_017841.2	85	Ctt/Att																																																																															
EED	8726	MSKCC	GRCh37	11	85988119	85988119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	266	510	0	ENST00000263360.6:c.1064G>A	p.Arg355Gln	p.R355Q	ENST00000263360	NM_003797.3	355	cGa/cAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118361991	118361991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	98	395	0	ENST00000534358.1:c.4777C>T	p.Arg1593Cys	p.R1593C	ENST00000534358	NM_005933.3	1593	Cgc/Tgc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431455	121431455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	106	542	0	ENST00000257555.6:c.659G>A	p.Arg220Lys	p.R220K	ENST00000257555		220	aGg/aAg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012447	29012447	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	60	522	0	ENST00000282397.4:c.424A>C	p.Ile142Leu	p.I142L	ENST00000282397	NM_002019.4	142	Atc/Ctc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337737	73337737	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	137	214	0	ENST00000377767.4:c.1979A>G	p.Asn660Ser	p.N660S	ENST00000377767	NM_014953.3	660	aAt/aGt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068968	30068968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	316	637	0	ENST00000331968.5:c.1961G>T	p.Arg654Ile	p.R654I	ENST00000331968	NM_002742.2	654	aGa/aTa																																																																															
AKT1	207	MSKCC	GRCh37	14	105236736	105236736	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	236	679	0	ENST00000349310.3:c.1385A>G	p.Asp462Gly	p.D462G	ENST00000349310	NM_001014432.1	462	gAc/gGc																																																																															
MGA	23269	MSKCC	GRCh37	15	41988603	41988603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	169	488	0	ENST00000219905.7:c.1395G>T	p.Lys465Asn	p.K465N	ENST00000219905	NM_001164273.1	465	aaG/aaT																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701157	43701157	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	280	563	0	ENST00000382044.4:c.5538G>T	p.Gln1846His	p.Q1846H	ENST00000382044	NM_001141980.1	1846	caG/caT																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43708548	43708548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	409	754	0	ENST00000382044.4:c.4748G>T	p.Arg1583Ile	p.R1583I	ENST00000382044	NM_001141980.1	1583	aGa/aTa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748582	43748582	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	502	1071	0	ENST00000382044.4:c.2224G>T	p.Glu742Ter	p.E742*	ENST00000382044	NM_001141980.1	742	Gaa/Taa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483943	88483943	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	105	680	0	ENST00000360948.2:c.1627G>T	p.Glu543Ter	p.E543*	ENST00000360948	NM_001012338.2	543	Gaa/Taa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465378	99465378	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	52	297	0	ENST00000268035.6:c.2203C>T	p.Pro735Ser	p.P735S	ENST00000268035	NM_000875.3	735	Cct/Tct																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81925121	81925121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	76	539	1	ENST00000359376.3:c.912G>T	p.Glu304Asp	p.E304D	ENST00000359376	NM_002661.3	304	gaG/gaT																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350669	89350669	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1764	217	1090	0	ENST00000301030.4:c.2281T>G	p.Tyr761Asp	p.Y761D	ENST00000301030	NM_001256183.1	761	Tac/Gac																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7990631	7990631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	300	570	0	ENST00000319144.4:c.130G>T	p.Asp44Tyr	p.D44Y	ENST00000319144	NM_001139.2	44	Gac/Tac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15967469	15967469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	59	547	0	ENST00000268712.3:c.5134G>A	p.Ala1712Thr	p.A1712T	ENST00000268712	NM_006311.3	1712	Gct/Act																																																																															
NF1	4763	MSKCC	GRCh37	17	29586089	29586089	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	189	550	0	ENST00000358273.4:c.4372G>T	p.Glu1458Ter	p.E1458*	ENST00000358273	NM_001042492.2	1458	Gaa/Taa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243927	41243927	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	357	729	0	ENST00000357654.3:c.3621G>T	p.Lys1207Asn	p.K1207N	ENST00000357654	NM_007294.3	1207	aaG/aaT																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244942	41244942	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1192	142	786	0	ENST00000357654.3:c.2606T>G	p.Phe869Cys	p.F869C	ENST00000357654	NM_007294.3	869	tTt/tGt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374971	45374971	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	99	563	0	ENST00000262160.6:c.872A>G	p.His291Arg	p.H291R	ENST00000262160	NM_005901.5	291	cAt/cGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584519	48584519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	68	403	0	ENST00000342988.3:c.692G>A	p.Gly231Asp	p.G231D	ENST00000342988	NM_005359.5	231	gGc/gAc																																																																															
ALK	238	MSKCC	GRCh37	2	29917840	29917840	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	193	700	0	ENST00000389048.3:c.828T>G	p.Tyr276Ter	p.Y276*	ENST00000389048	NM_004304.4	276	taT/taG																																																																															
SOS1	6654	MSKCC	GRCh37	2	39347481	39347481	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	72	416	0	ENST00000402219.2:c.83A>C	p.Lys28Thr	p.K28T	ENST00000402219	NM_005633.3	28	aAa/aCa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095884	178095884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	91	591	1	ENST00000397062.3:c.1447G>A	p.Glu483Lys	p.E483K	ENST00000397062	NM_006164.4	483	Gaa/Aaa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267451	198267451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	87	441	0	ENST00000335508.6:c.1906G>A	p.Ala636Thr	p.A636T	ENST00000335508	NM_012433.2	636	Gcc/Acc																																																																															
CASP8	841	MSKCC	GRCh37	2	202122998	202122998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	73	466	0	ENST00000358485.4:c.44G>T	p.Arg15Ile	p.R15I	ENST00000358485	NM_001080125.1	15	aGa/aTa																																																																															
IDH1	3417	MSKCC	GRCh37	2	209108234	209108234	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	93	579	0	ENST00000345146.2:c.615G>A	p.Trp205Ter	p.W205*	ENST00000345146	NM_005896.2	205	tgG/tgA																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523334	9523334	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	250	492	0	ENST00000353224.5:c.1903G>T	p.Glu635Ter	p.E635*	ENST00000353224	NM_177990.2	635	Gaa/Taa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743866	40743866	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	328	587	0	ENST00000373198.4:c.3129C>A	p.Tyr1043Ter	p.Y1043*	ENST00000373198	NM_133170.3	1043	taC/taA																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944557	40944557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	57	484	0	ENST00000373198.4:c.1945C>T	p.Pro649Ser	p.P649S	ENST00000373198	NM_133170.3	649	Ccc/Tcc																																																																															
ERG	2078	MSKCC	GRCh37	21	39772513	39772513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	74	537	0	ENST00000288319.7:c.728G>T	p.Arg243Ile	p.R243I	ENST00000288319	NM_182918.3	243	aGa/aTa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275276	41275276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	220	436	0	ENST00000349496.5:c.1442C>T	p.Ala481Val	p.A481V	ENST00000349496	NM_001904.3	481	gCc/gTc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162677	47162677	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	88	522	0	ENST00000409792.3:c.3449G>T	p.Arg1150Ile	p.R1150I	ENST00000409792	NM_014159.6	1150	aGa/aTa																																																																															
MST1R	4486	MSKCC	GRCh37	3	49929245	49929245	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	361	764	1	ENST00000296474.3:c.3298G>T	p.Glu1100Ter	p.E1100*	ENST00000296474	NM_002447.2	1100	Gaa/Taa																																																																															
ATR	545	MSKCC	GRCh37	3	142257331	142257331	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	236	440	0	ENST00000350721.4:c.3718G>T	p.Glu1240Ter	p.E1240*	ENST00000350721	NM_001184.3	1240	Gaa/Taa																																																																															
ATR	545	MSKCC	GRCh37	3	142279115	142279115	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	72	399	0	ENST00000350721.4:c.1531A>C	p.Asn511His	p.N511H	ENST00000350721	NM_001184.3	511	Aac/Cac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919111	178919111	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	29	310	0	ENST00000263967.3:c.596C>A	p.Ser199Tyr	p.S199Y	ENST00000263967	NM_006218.2	199	tCt/tAt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191451	185191451	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	144	717	1	ENST00000265026.3:c.2332G>T	p.Glu778Ter	p.E778*	ENST00000265026	NM_004721.4	778	Gaa/Taa																																																																															
KDR	3791	MSKCC	GRCh37	4	55981172	55981172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	98	561	0	ENST00000263923.4:c.527G>T	p.Arg176Ile	p.R176I	ENST00000263923	NM_002253.2	176	aGa/aTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539736	187539736	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	172	510	1	ENST00000441802.2:c.8004C>A	p.Phe2668Leu	p.F2668L	ENST00000441802	NM_005245.3	2668	ttC/ttA																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950571	38950571	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	120	622	0	ENST00000357387.3:c.3379A>G	p.Ser1127Gly	p.S1127G	ENST00000357387	NM_152756.3	1127	Agc/Ggc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56176993	56176993	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	95	457	0	ENST00000399503.3:c.2263C>A	p.Leu755Ile	p.L755I	ENST00000399503	NM_005921.1	755	Ctt/Att																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753027	57753027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	202	427	0	ENST00000274289.3:c.989G>A	p.Arg330Gln	p.R330Q	ENST00000274289	NM_006622.3	330	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112090654	112090654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	90	291	0	ENST00000257430.4:c.67C>A	p.Leu23Ile	p.L23I	ENST00000257430	NM_000038.5	23	Ctt/Att																																																																															
APC	324	MSKCC	GRCh37	5	112116529	112116529	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	165	286	1	ENST00000257430.4:c.574G>T	p.Glu192Ter	p.E192*	ENST00000257430	NM_000038.5	192	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112177403	112177403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	53	338	0	ENST00000257430.4:c.6112C>A	p.Leu2038Met	p.L2038M	ENST00000257430	NM_000038.5	2038	Ctg/Atg																																																																															
IRF4	3662	MSKCC	GRCh37	6	401593	401593	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	71	493	0	ENST00000380956.4:c.915G>T	p.Glu305Asp	p.E305D	ENST00000380956	NM_001195286.1	305	gaG/gaT																																																																															
IRF4	3662	MSKCC	GRCh37	6	405061	405061	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	236	466	0	ENST00000380956.4:c.1143C>A	p.Phe381Leu	p.F381L	ENST00000380956	NM_001195286.1	381	ttC/ttA																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93964441	93964441	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	97	647	0	ENST00000369303.4:c.2456T>C	p.Val819Ala	p.V819A	ENST00000369303	NM_004440.3	819	gTa/gCa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117683872	117683872	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	205	639	0	ENST00000368508.3:c.3275G>T	p.Ser1092Ile	p.S1092I	ENST00000368508	NM_002944.2	1092	aGt/aTt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117708103	117708103	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	227	505	0	ENST00000368508.3:c.2074A>C	p.Asn692His	p.N692H	ENST00000368508	NM_002944.2	692	Aat/Cat																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997741	149997741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	255	427	0	ENST00000253339.5:c.2726C>A	p.Ser909Tyr	p.S909Y	ENST00000253339		909	tCt/tAt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001560	150001560	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	258	515	0	ENST00000253339.5:c.2044A>G	p.Arg682Gly	p.R682G	ENST00000253339		682	Aga/Gga																																																																															
RHEB	6009	MSKCC	GRCh37	7	151174437	151174437	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	66	381	0	ENST00000262187.5:c.257C>A	p.Ser86Tyr	p.S86Y	ENST00000262187	NM_005614.3	86	tCt/tAt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38178654	38178654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	121	574	0	ENST00000317025.8:c.1745G>T	p.Arg582Ile	p.R582I	ENST00000317025	NM_023034.1	582	aGa/aTa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68995501	68995501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	115	608	0	ENST00000288368.4:c.1905G>T	p.Lys635Asn	p.K635N	ENST00000288368	NM_024870.2	635	aaG/aaT																																																																															
TEK	7010	MSKCC	GRCh37	9	27202911	27202911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	321	650	0	ENST00000380036.4:c.2003C>T	p.Ser668Phe	p.S668F	ENST00000380036	NM_000459.3	668	tCt/tTt																																																																															
TEK	7010	MSKCC	GRCh37	9	27206730	27206730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	88	578	1	ENST00000380036.4:c.2515C>A	p.Leu839Ile	p.L839I	ENST00000380036	NM_000459.3	839	Ctt/Att																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209460	98209460	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	260	603	0	ENST00000331920.6:c.4078T>A	p.Ser1360Thr	p.S1360T	ENST00000331920	NM_000264.3	1360	Tcc/Acc																																																																															
ATRX	546	MSKCC	GRCh37	X	76939692	76939692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	121	365	0	ENST00000373344.5:c.1056G>T	p.Met352Ile	p.M352I	ENST00000373344	NM_000489.3	352	atG/atT																																																																															
XIAP	331	MSKCC	GRCh37	X	123041020	123041020	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	37	67	0	ENST00000355640.3:c.1483T>G	p.Phe495Val	p.F495V	ENST00000355640		495	Ttt/Gtt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	56	467	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	39	389	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175755	112175755	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	23	248	0	ENST00000257430.4:c.4464del	p.Leu1488PhefsTer19	p.L1488Ffs*19	ENST00000257430	NM_000038.5	1488	ttA/tt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	29	361	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	66	309	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
APC	324	MSKCC	GRCh37	5	112173730	112173730	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	27	294	1	ENST00000257430.4:c.2442del	p.Phe814LeufsTer6	p.F814Lfs*6	ENST00000257430	NM_000038.5	813	aaT/aa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481620	56481620	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	78	565	0	ENST00000267101.3:c.655T>C	p.Phe219Leu	p.F219L	ENST00000267101	NM_001982.3	219	Ttt/Ctt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223325	2223325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	51	538	2	ENST00000326181.6:c.937G>A	p.Ala313Thr	p.A313T	ENST00000326181	NM_032271.2	313	Gcc/Acc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982987	201982987	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	93	552	0	ENST00000359651.3:c.836T>C	p.Ile279Thr	p.I279T	ENST00000359651		279	aTc/aCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579732	7579873	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAGCAGAAAGTCAGTCCCATGGAATTTTCGCTTCCCACAGGTCTCTGCTAGGGGGCTGGGGTTGGGGTGGGGGTGGTGGGCCTGCCCTTCCAATGGATCCACTCACAGTTTCCATAGGTCTGAAAATGTTTCCTGACTCAG	AGAGCAGAAAGTCAGTCCCATGGAATTTTCGCTTCCCACAGGTCTCTGCTAGGGGGCTGGGGTTGGGGTGGGGGTGGTGGGCCTGCCCTTCCAATGGATCCACTCACAGTTTCCATAGGTCTGAAAATGTTTCCTGACTCAG	-			P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	34	450	0	ENST00000269305.4:c.40_75-11del		p.X14_splice	ENST00000269305	NM_001126112.2	14																																																																																
SOX9	6662	MSKCC	GRCh37	17	70117677	70117677	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	142	507	2	ENST00000245479.2:c.145C>T	p.Gln49Ter	p.Q49*	ENST00000245479	NM_000346.3	49	Cag/Tag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530132	212530132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	40	335	0	ENST00000342788.4:c.1787G>T	p.Gly596Val	p.G596V	ENST00000342788	NM_005235.2	596	gGc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112173388	112173388	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	20	228	0	ENST00000257430.4:c.2097G>A	p.Trp699Ter	p.W699*	ENST00000257430	NM_000038.5	699	tgG/tgA																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944382	131944385	+	frameshift_variant	Frame_Shift_Del	DEL	AAAA	AAAA	-			P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	19	189	0	ENST00000265335.6:c.2798_2801del	p.Lys933IlefsTer6	p.K933Ifs*6	ENST00000265335		932	AAAAaa/aa																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910659	29910659	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	78	729	0	ENST00000376809.5:c.199C>T	p.Gln67Ter	p.Q67*	ENST00000376809	NM_002116.7	67	Cag/Tag																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0035145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	74	746	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93973590	93973590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	36	410	2	ENST00000369303.4:c.1786C>A	p.Leu596Ile	p.L596I	ENST00000369303	NM_004440.3	596	Ctt/Att																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	257	452	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	141	403	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0035155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	88	468	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0035155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	125	345	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928067	178928067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	58	580	0	ENST00000263967.3:c.1345C>T	p.Pro449Ser	p.P449S	ENST00000263967	NM_006218.2	449	Cct/Tct																																																																															
MSH2	4436	MSKCC	GRCh37	2	47709954	47709954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	196	328	1	ENST00000233146.2:c.2671G>A	p.Val891Met	p.V891M	ENST00000233146	NM_000251.2	891	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175641	112175641	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	234	305	0	ENST00000257430.4:c.4350del	p.Glu1451LysfsTer22	p.E1451Kfs*22	ENST00000257430	NM_000038.5	1450	cgA/cg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020566	69020566	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	47	433	0	ENST00000288368.4:c.2938G>A	p.Gly980Arg	p.G980R	ENST00000288368	NM_024870.2	980	Ggg/Agg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742835	145742835	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	24	294	0	ENST00000428558.2:c.176T>C	p.Leu59Pro	p.L59P	ENST00000428558	NM_004260.3	59	cTc/cCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0035157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	63	320	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	101	540	2	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
SRC	6714	MSKCC	GRCh37	20	36014525	36014525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	91	498	0	ENST00000358208.4:c.298G>A	p.Glu100Lys	p.E100K	ENST00000358208		100	Gag/Aag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15935630	15935630	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	54	375	0	ENST00000268712.3:c.7303del	p.Leu2435CysfsTer56	p.L2435Cfs*56	ENST00000268712	NM_006311.3	2435	Ctg/tg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61717905	61717912	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TATGAACC	TATGAACC	-			P-0035157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	87	400	0	ENST00000401558.2:c.1888-1_1894del		p.X630_splice	ENST00000401558	NM_003400.3	630																																																																																
CDK6	1021	MSKCC	GRCh37	7	92247444	92247444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	52	282	0	ENST00000265734.4:c.776C>T	p.Ala259Val	p.A259V	ENST00000265734	NM_001259.6	259	gCc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	44	491	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0035210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	43	406	0				ENST00000310581	NM_198253.2																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	101	486	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188188	32188188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	75	532	0	ENST00000375023.3:c.1153C>T	p.Arg385Cys	p.R385C	ENST00000375023	NM_004557.3	385	Cgc/Tgc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911579	134911579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	98	583	0	ENST00000398015.3:c.2044C>T	p.Arg682Cys	p.R682C	ENST00000398015	NM_004441.4	682	Cgc/Tgc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0035210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	148	479	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591846	48591846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	68	560	0	ENST00000342988.3:c.1009G>A	p.Glu337Lys	p.E337K	ENST00000342988	NM_005359.5	337	Gag/Aag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119031	70119032	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCAT			P-0035210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	75	622	1	ENST00000245479.2:c.604_608dup	p.Ile203MetfsTer18	p.I203Mfs*18	ENST00000245479	NM_000346.3	201	-/GCCAT																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593505	48593505	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	55	347	0	ENST00000342988.3:c.1256G>C	p.Gly419Ala	p.G419A	ENST00000342988	NM_005359.5	419	gGg/gCg																																																																															
APC	324	MSKCC	GRCh37	5	112174108	112174112	+	frameshift_variant	Frame_Shift_Del	DEL	GTCGG	GTCGG	-			P-0035210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	28	328	0	ENST00000257430.4:c.2817_2821del	p.Ser940LysfsTer4	p.S940Kfs*4	ENST00000257430	NM_000038.5	939	aaGTCGGaa/aaaa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180051003	180051003	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs307826		P-0000041-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			241	14	897	0	ENST00000261937.6:c.1480A>G	p.Thr494Ala	p.T494A	ENST00000261937	NM_182925.4	494	Acg/Gcg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178570	32178570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs17604492		P-0000041-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	23	767	0	ENST00000375023.3:c.2824G>A	p.Gly942Arg	p.G942R	ENST00000375023	NM_004557.3	942	Ggg/Agg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212576777	212576777	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C	rs76603692		P-0000041-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			305	26	901	0	ENST00000342788.4:c.1122T>G	p.His374Gln	p.H374Q	ENST00000342788	NM_005235.2	374	caT/caG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000041-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	229	751	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143067053	143067053	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61733152		P-0000041-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	26	1067	0	ENST00000262992.4:c.1660G>A	p.Gly554Ser	p.G554S	ENST00000262992	NM_001101669.1	554	Ggc/Agc																																																																															
HGF	3082	MSKCC	GRCh37	7	81359051	81359051	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs5745687		P-0000041-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	28	1063	0	ENST00000222390.5:c.910G>A	p.Glu304Lys	p.E304K	ENST00000222390	NM_000601.4	304	Gaa/Aaa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435220	18435220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201018498		P-0000041-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			637	39	1005	0	ENST00000266497.5:c.205C>T	p.Pro69Ser	p.P69S	ENST00000266497		69	Cca/Tca																																																																															
POLE	5426	MSKCC	GRCh37	12	133201381	133201381	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs73155056		P-0000041-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	17	846	0	ENST00000320574.5:c.6763A>T	p.Ile2255Phe	p.I2255F	ENST00000320574	NM_006231.2	2255	Atc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579300	7579313	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGGCAACTGACCG	AGGGCAACTGACCG	-			P-0000041-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			133	109	577	0	ENST00000269305.4:c.374_375+12del		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
NF2	4771	MSKCC	GRCh37	22	30038229	30038229	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000041-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	24	1165	0	ENST00000338641.4:c.402del	p.Pro135LeufsTer39	p.P135Lfs*39	ENST00000338641	NM_000268.3	134	ccT/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579369	7579369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			70	200	1029	0	ENST00000269305.4:c.318C>G	p.Ser106Arg	p.S106R	ENST00000269305	NM_001126112.2	106	agC/agG																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030323	180030323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			285	120	2007	0	ENST00000261937.6:c.3961C>T	p.Arg1321Trp	p.R1321W	ENST00000261937	NM_182925.4	1321	Cgg/Tgg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287461	33287461	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	97	950	0	ENST00000374542.5:c.1636G>C	p.Glu546Gln	p.E546Q	ENST00000374542	NM_001141970.1	546	Gaa/Caa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153259012	153259013	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0000969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			177	220	1540	0	ENST00000281708.4:c.802_803delAT	p.Met268AspfsTer18	p.M268Dfs*18	ENST00000281708	NM_033632.3	268	ATg/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0006724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	304	297	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057520005		P-0006724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	492	392	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106833	27106833	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0006724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	404	278	0	ENST00000324856.7:c.6444T>A	p.Tyr2148Ter	p.Y2148*	ENST00000324856	NM_006015.4	2148	taT/taA																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967051	25967051	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	326	255	0	ENST00000435504.4:c.2155A>G	p.Arg719Gly	p.R719G	ENST00000435504		719	Aga/Gga																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873212	136873212	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	617	597	0	ENST00000241393.3:c.286G>C	p.Val96Leu	p.V96L	ENST00000241393	NM_003467.2	96	Gtt/Ctt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198263186	198263186	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0006724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	140	284	0	ENST00000335508.6:c.3133A>T	p.Arg1045Trp	p.R1045W	ENST00000335508	NM_012433.2	1045	Agg/Tgg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212576902	212576902	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0006724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	129	251	0	ENST00000342788.4:c.998-1G>T		p.X333_splice	ENST00000342788	NM_005235.2	333																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89499435	89499435	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	398	334	0	ENST00000336596.2:c.2605C>A	p.Pro869Thr	p.P869T	ENST00000336596	NM_005233.5	869	Ccc/Acc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671946	30671946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	454	408	0	ENST00000376406.3:c.5014C>T	p.Pro1672Ser	p.P1672S	ENST00000376406	NM_014641.2	1672	Cct/Tct																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673274	30673274	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	445	424	0	ENST00000376406.3:c.3686G>T	p.Arg1229Met	p.R1229M	ENST00000376406	NM_014641.2	1229	aGg/aTg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93974325	93974325	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	426	461	0	ENST00000369303.4:c.1729A>G	p.Ile577Val	p.I577V	ENST00000369303	NM_004440.3	577	Atc/Gtc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508682	106508682	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	313	282	0	ENST00000359195.3:c.676C>G	p.Arg226Gly	p.R226G	ENST00000359195	NM_002649.2	226	Cgc/Ggc																																																																															
MET	4233	MSKCC	GRCh37	7	116395458	116395458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	376	389	1	ENST00000397752.3:c.1751G>T	p.Cys584Phe	p.C584F	ENST00000397752	NM_000245.2	584	tGt/tTt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625197	69625197	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	358	325	0	ENST00000334134.2:c.596C>A	p.Pro199His	p.P199H	ENST00000334134	NM_005247.2	199	cCc/cAc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998526	100998526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	326	259	0	ENST00000325455.5:c.1276C>T	p.Pro426Ser	p.P426S	ENST00000325455	NM_001202474.3	426	Ccg/Tcg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061775	38061775	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	375	290	0	ENST00000250448.2:c.214G>T	p.Gly72Cys	p.G72C	ENST00000250448	NM_004496.3	72	Ggc/Tgc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609339	81609339	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	403	453	0	ENST00000298171.2:c.937A>C	p.Lys313Gln	p.K313Q	ENST00000298171	NM_000369.2	313	Aaa/Caa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992901	72992901	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	539	486	0	ENST00000268489.5:c.1144G>T	p.Gly382Cys	p.G382C	ENST00000268489	NM_006885.3	382	Ggc/Tgc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58677950	58677950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	422	175	0	ENST00000305921.3:c.175C>T	p.Pro59Ser	p.P59S	ENST00000305921	NM_003620.3	59	Ccc/Tcc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11107057	11107057	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0006724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	265	207	0	ENST00000344626.4:c.1761+1G>C		p.X587_splice	ENST00000344626	NM_003072.3	587																																																																																
CIC	23152	MSKCC	GRCh37	19	42791838	42791838	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	322	287	0	ENST00000575354.2:c.724G>C	p.Gly242Arg	p.G242R	ENST00000575354	NM_015125.3	242	Ggg/Cgg																																																																															
NF2	4771	MSKCC	GRCh37	22	30077459	30077459	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	408	285	2	ENST00000338641.4:c.1606C>T	p.Gln536Ter	p.Q536*	ENST00000338641	NM_000268.3	536	Cag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097625	11097625	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	412	362	3	ENST00000344626.4:c.810delC	p.Met272CysfsTer31	p.M272Cfs*31	ENST00000344626	NM_003072.3	269	Ccc/cc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423602	88423602	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	335	322	0	ENST00000360948.2:c.2233del	p.Arg745GlyfsTer14	p.R745Gfs*14	ENST00000360948	NM_001012338.2	745	Cgg/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033487-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			697	263	857	0	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872460	35872461	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033487-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			525	204	563	0	ENST00000216797.5:c.442_443insA	p.Leu148HisfsTer6	p.L148Hfs*6	ENST00000216797	NM_020529.2	148	cta/cAta																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095616	178095616	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033487-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			580	149	519	0	ENST00000397062.3:c.1715A>G	p.Asp572Gly	p.D572G	ENST00000397062	NM_006164.4	572	gAt/gGt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86676334	86676334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033487-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			193	65	263	0	ENST00000274376.6:c.2612G>T	p.Arg871Ile	p.R871I	ENST00000274376	NM_002890.2	871	aGa/aTa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117704495	117704495	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033487-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			303	87	359	0	ENST00000368508.3:c.2481G>C	p.Trp827Cys	p.W827C	ENST00000368508	NM_002944.2	827	tgG/tgC																																																																															
ETV1	2115	MSKCC	GRCh37	7	13940374	13940374	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033487-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			422	115	413	0	ENST00000405192.2:c.1132A>T	p.Ile378Phe	p.I378F	ENST00000405192	NM_001163147.1	378	Att/Ttt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877057	151877061	+	frameshift_variant	Frame_Shift_Del	DEL	GGTCT	GGTCT	-			P-0033487-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			513	115	460	0	ENST00000262189.6:c.7300_7304del	p.Arg2434ProfsTer9	p.R2434Pfs*9	ENST00000262189	NM_170606.2	2434	AGACCc/c																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371806	55371806	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033487-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			292	156	240	0	ENST00000297316.4:c.496G>C	p.Ala166Pro	p.A166P	ENST00000297316	NM_022454.3	166	Gcg/Ccg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782596		P-0034905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	10	767	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692791	89692791	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	90	336	0	ENST00000371953.3:c.275A>T	p.Asp92Val	p.D92V	ENST00000371953	NM_000314.4	92	gAc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	494	1040	1	ENST00000269305.4:c.434T>A	p.Leu145Gln	p.L145Q	ENST00000269305	NM_001126112.2	145	cTg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938931	178938931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	99	402	0	ENST00000263967.3:c.2173G>A	p.Asp725Asn	p.D725N	ENST00000263967	NM_006218.2	725	Gat/Aat																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259116	89259117	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0034905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	104	345	0	ENST00000336596.2:c.264dup	p.Arg89GlnfsTer20	p.R89Qfs*20	ENST00000336596	NM_005233.5	87	gtc/gtCc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67593258	67593258	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	114	276	0	ENST00000274335.5:c.2004del	p.Lys668AsnfsTer5	p.K668Nfs*5	ENST00000274335		668	aaG/aa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	119	698	0	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307243	118307243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	28	222	2	ENST00000534358.1:c.16C>T	p.Arg6Trp	p.R6W	ENST00000534358	NM_005933.3	6	Cgg/Tgg																																																																															
CALR	811	MSKCC	GRCh37	19	13051240	13051240	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	49	398	0	ENST00000316448.5:c.676G>C	p.Asp226His	p.D226H	ENST00000316448	NM_004343.3	226	Gat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0035132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	35	541	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0035135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	282	509	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	170	602	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	26	588	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	27	838	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17129606	17129606	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	43	734	0	ENST00000285071.4:c.280G>T	p.Gly94Ter	p.G94*	ENST00000285071	NM_144997.5	94	Gga/Tga																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231103	46231103	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	32	422	0	ENST00000334344.6:c.1024-1G>T		p.X342_splice	ENST00000334344	NM_152641.2	342																																																																																
TP53	7157	MSKCC	GRCh37	17	7577557	7577557	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	38	613	2	ENST00000269305.4:c.724T>A	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	Tgc/Agc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176665451	176665451	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	15	482	0	ENST00000439151.2:c.4135C>G	p.Pro1379Ala	p.P1379A	ENST00000439151	NM_022455.4	1379	Ccg/Gcg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470594	25470594	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	21	651	0	ENST00000264709.3:c.880G>T	p.Glu294Ter	p.E294*	ENST00000264709	NM_175629.2	294	Gag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099344	27099344	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	17	605	0	ENST00000324856.7:c.3581G>C	p.Gly1194Ala	p.G1194A	ENST00000324856	NM_006015.4	1194	gGa/gCa																																																																															
LMO1	4004	MSKCC	GRCh37	11	8251899	8251899	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	29	663	0	ENST00000335790.3:c.178G>T	p.Glu60Ter	p.E60*	ENST00000335790	NM_002315.2	60	Gag/Tag																																																																															
MDM2	4193	MSKCC	GRCh37	12	69207402	69207402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	14	348	0	ENST00000462284.1:c.168G>C	p.Met56Ile	p.M56I	ENST00000462284	NM_002392.5	56	atG/atC																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112482	115112482	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	23	634	0	ENST00000257566.3:c.1258G>T	p.Glu420Ter	p.E420*	ENST00000257566	NM_016569.3	420	Gag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831714	72831714	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	32	671	0	ENST00000268489.5:c.4867A>G	p.Lys1623Glu	p.K1623E	ENST00000268489	NM_006885.3	1623	Aag/Gag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968852	15968852	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	22	581	0	ENST00000268712.3:c.4898G>C	p.Arg1633Thr	p.R1633T	ENST00000268712	NM_006311.3	1633	aGa/aCa																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40441516	40441516	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	39	738	1	ENST00000345506.4:c.87G>T	p.Glu29Asp	p.E29D	ENST00000345506	NM_003152.3	29	gaG/gaT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419981	41419981	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	20	522	0	ENST00000373198.4:c.340A>T	p.Arg114Trp	p.R114W	ENST00000373198	NM_133170.3	114	Agg/Tgg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713335	30713335	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	29	442	0	ENST00000359013.4:c.736del	p.Glu246LysfsTer43	p.E246Kfs*43	ENST00000359013	NM_001024847.2	245	ctG/ct																																																																															
CCND3	896	MSKCC	GRCh37	6	41903760	41903760	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142862109		P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	18	620	0	ENST00000372991.4:c.797C>T	p.Ala266Val	p.A266V	ENST00000372991	NM_001760.3	266	gCg/gTg																																																																															
MET	4233	MSKCC	GRCh37	7	116340184	116340184	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	36	329	1	ENST00000397752.3:c.1046G>T	p.Ser349Ile	p.S349I	ENST00000397752	NM_000245.2	349	aGc/aTc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978544	70978544	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	21	570	0	ENST00000276594.2:c.1109A>T	p.Tyr370Phe	p.Y370F	ENST00000276594	NM_024504.3	370	tAt/tTt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391352	139391352	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	13	706	0	ENST00000277541.6:c.6839C>G	p.Ser2280Cys	p.S2280C	ENST00000277541	NM_017617.3	2280	tCt/tGt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413096	63413096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	25	378	0	ENST00000330258.3:c.71C>T	p.Thr24Ile	p.T24I	ENST00000330258	NM_152424.3	24	aCa/aTa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115931	8115947	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGCCTGTCCTTTGGA	CCAGCCTGTCCTTTGGA	-			P-0035176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	121	412	0	ENST00000346208.3:c.1280_1296del	p.Ser427ThrfsTer74	p.S427Tfs*74	ENST00000346208		426	tCCAGCCTGTCCTTTGGA/t																																																																															
CD276	80381	MSKCC	GRCh37	15	73996167	73996167	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149869002		P-0035176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	187	771	0	ENST00000318443.5:c.901C>T	p.Arg301Trp	p.R301W	ENST00000318443	NM_001024736.1	301	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	199	526	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222319	53222319	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	309	742	0	ENST00000375401.3:c.4513G>T	p.Glu1505Ter	p.E1505*	ENST00000375401	NM_004187.3	1505	Gag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244136	153244136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	272	522	1	ENST00000281708.4:c.2021G>A	p.Arg674Gln	p.R674Q	ENST00000281708	NM_033632.3	674	cGg/cAg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913476		P-0035177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	316	566	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																															
MALT1	10892	MSKCC	GRCh37	18	56376768	56376768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	143	380	0	ENST00000348428.3:c.808G>A	p.Glu270Lys	p.E270K	ENST00000348428	NM_006785.3	270	Gag/Aag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155721	56155722	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0035177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	320	317	0	ENST00000399503.3:c.816_817del	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	271	agAAaa/agaa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827589	72827589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	598	634	3	ENST00000268489.5:c.8992C>T	p.Arg2998Trp	p.R2998W	ENST00000268489	NM_006885.3	2998	Cgg/Tgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831117	72831118	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	520	540	0	ENST00000268489.5:c.5463dup	p.Leu1822ThrfsTer107	p.L1822Tfs*107	ENST00000268489	NM_006885.3	1821	-/A																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15960927	15960927	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0035177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	213	395	0	ENST00000268712.3:c.6293C>G	p.Ser2098Ter	p.S2098*	ENST00000268712	NM_006311.3	2098	tCa/tGa																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33433424	33433424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	249	635	1	ENST00000335858.7:c.221G>A	p.Arg74Gln	p.R74Q	ENST00000335858	NM_133629.2	74	cGa/cAa																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29095912	29095912	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	257	488	0	ENST00000328354.6:c.922G>C	p.Glu308Gln	p.E308Q	ENST00000328354	NM_007194.3	308	Gag/Cag																																																																															
MST1R	4486	MSKCC	GRCh37	3	49924945	49924945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	298	596	0	ENST00000296474.3:c.3998C>T	p.Thr1333Ile	p.T1333I	ENST00000296474	NM_002447.2	1333	aCc/aTc																																																																															
BCL6	604	MSKCC	GRCh37	3	187447721	187447721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	280	513	0	ENST00000232014.4:c.472C>T	p.Arg158Trp	p.R158W	ENST00000232014	NM_001130845.1	158	Cgg/Tgg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38944592	38944592	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	151	404	0	ENST00000357387.3:c.4869G>C	p.Leu1623Phe	p.L1623F	ENST00000357387	NM_152756.3	1623	ttG/ttC																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38944618	38944618	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	156	429	0	ENST00000357387.3:c.4843G>C	p.Glu1615Gln	p.E1615Q	ENST00000357387	NM_152756.3	1615	Gaa/Caa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56176969	56176969	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	242	413	1	ENST00000399503.3:c.2239G>T	p.Glu747Ter	p.E747*	ENST00000399503	NM_005921.1	747	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175021	112175021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	128	238	0	ENST00000257430.4:c.3730C>G	p.Gln1244Glu	p.Q1244E	ENST00000257430	NM_000038.5	1244	Caa/Gaa																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64288863	64288863	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	316	620	0	ENST00000370651.3:c.259C>G	p.Leu87Val	p.L87V	ENST00000370651	NM_003463.4	87	Ctt/Gtt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004481	150004481	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	359	675	0	ENST00000253339.5:c.1744G>C	p.Glu582Gln	p.E582Q	ENST00000253339		582	Gag/Cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	100	335	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	58	553	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
TET1	80312	MSKCC	GRCh37	10	70432801	70432801	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0034926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	39	298	0	ENST00000373644.4:c.4823A>G	p.His1608Arg	p.H1608R	ENST00000373644	NM_030625.2	1608	cAt/cGt																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67196711	67196711	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0034926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	31	269	0	ENST00000312629.5:c.240G>T	p.Lys80Asn	p.K80N	ENST00000312629	NM_003952.2	80	aaG/aaT																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231141	46231141	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	73	364	0	ENST00000334344.6:c.1061T>C	p.Leu354Pro	p.L354P	ENST00000334344	NM_152641.2	354	cTg/cCg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73335928	73335929	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0034926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	69	268	0	ENST00000377767.4:c.2366_2367delinsTT	p.Arg789Leu	p.R789L	ENST00000377767	NM_014953.3	789	cGG/cTT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600002	10600002	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	88	590	0	ENST00000171111.5:c.1574A>C	p.Tyr525Ser	p.Y525S	ENST00000171111	NM_203500.1	525	tAt/tCt																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182683483	182683483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	47	434	0	ENST00000292782.4:c.62C>A	p.Ser21Tyr	p.S21Y	ENST00000292782	NM_020640.2	21	tCt/tAt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729618	41729618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	45	442	0	ENST00000242208.4:c.911C>T	p.Pro304Leu	p.P304L	ENST00000242208	NM_002192.2	304	cCt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0034931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	34	522	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0034931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	42	305	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0034931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	46	213	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578456	7578457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGACGCGGGTGC			P-0034931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	159	719	0	ENST00000269305.4:c.461_473dup	p.Ala159HisfsTer26	p.A159Hfs*26	ENST00000269305	NM_001126112.2	158	cgc/cgGCACCCGCGTCCGc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166782	32166782	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	200	644	1	ENST00000375023.3:c.4456G>T	p.Gly1486Cys	p.G1486C	ENST00000375023	NM_004557.3	1486	Ggt/Tgt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099587	157099588	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0034931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	26	68	0	ENST00000346085.5:c.527dup	p.Pro177AlafsTer55	p.P177Afs*55	ENST00000346085	NM_020732.3	175	ggc/ggCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578473	7578473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	22	751	1	ENST00000269305.4:c.457C>T	p.Pro153Ser	p.P153S	ENST00000269305	NM_001126112.2	153	Ccc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	29	420	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0034932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1451	83	728	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	77	505	0	ENST00000304494.5:c.242C>G	p.Pro81Arg	p.P81R	ENST00000304494	NM_000077.4	81	cCc/cGc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082216	16082216	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1643	113	877	0	ENST00000281043.3:c.32del	p.Gly11AlafsTer2	p.G11Afs*2	ENST00000281043	NM_005378.4	10	ccG/cc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702367	47702367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	38	281	0	ENST00000233146.2:c.1963G>A	p.Val655Ile	p.V655I	ENST00000233146	NM_000251.2	655	Gta/Ata																																																																															
MSI1	4440	MSKCC	GRCh37	12	120794713	120794713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	133	495	0	ENST00000257552.2:c.644G>A	p.Gly215Asp	p.G215D	ENST00000257552	NM_002442.3	215	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579557	7579558	+	frameshift_variant	Frame_Shift_Ins	INS	TC	TC	AAA			P-0034934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	228	602	2	ENST00000269305.4:c.129_130delinsTTT	p.Leu43PhefsTer9	p.L43Ffs*9	ENST00000269305	NM_001126112.2	43	ttGAtg/ttTTTtg																																																																															
SMO	6608	MSKCC	GRCh37	7	128850297	128850297	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	58	644	0	ENST00000249373.3:c.1560del	p.Asn521ThrfsTer12	p.N521Tfs*12	ENST00000249373	NM_005631.4	520	atC/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0034939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	443	417	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0034939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	299	548	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0034939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	307	564	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528741	8528741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	134	277	0	ENST00000356435.5:c.391G>A	p.Gly131Ser	p.G131S	ENST00000356435		131	Ggc/Agc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151848528	151848528	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0034939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	121	250	0	ENST00000262189.6:c.12665del	p.Lys4222ArgfsTer10	p.K4222Rfs*10	ENST00000262189	NM_170606.2	4222	aAg/ag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0034971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	32	372	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911579	134911579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	20	541	1	ENST00000398015.3:c.2044C>T	p.Arg682Cys	p.R682C	ENST00000398015	NM_004441.4	682	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578175	7578175	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0034971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	17	630	1	ENST00000269305.4:c.672+2T>G		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	190	526	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	99	684	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	14	527	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	87	575	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	63	389	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129399	2129399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	120	611	0	ENST00000219476.3:c.3254C>T	p.Ser1085Leu	p.S1085L	ENST00000219476	NM_000548.3	1085	tCg/tTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216476	36216476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	396	935	1	ENST00000222270.7:c.3739C>T	p.Arg1247Cys	p.R1247C	ENST00000222270	NM_014727.1	1247	Cgt/Tgt																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66518973	66518973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	78	425	0	ENST00000358598.2:c.254C>G	p.Pro85Arg	p.P85R	ENST00000358598	NM_212471.2	85	cCt/cGt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120214	70120215	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	ACTA			P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	144	626	0	ENST00000245479.2:c.1217_1220dupACTA	p.Tyr407Ter	p.Y407*	ENST00000245479	NM_000346.3	406	cac/cACTAac																																																																															
MST1R	4486	MSKCC	GRCh37	3	49932788	49932788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	123	833	0	ENST00000296474.3:c.3083G>T	p.Gly1028Val	p.G1028V	ENST00000296474	NM_002447.2	1028	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175799	112175799	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	67	338	0	ENST00000257430.4:c.4508del	p.Ser1503TyrfsTer4	p.S1503Yfs*4	ENST00000257430	NM_000038.5	1503	tCa/ta																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910657	29910676	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAGAGGATGGAGCCGCGG	GCCAGAGGATGGAGCCGCGG	-			P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	43	1050	0	ENST00000376809.5:c.199_218del	p.Gln67AlafsTer25	p.Q67Afs*25	ENST00000376809	NM_002116.7	66	aGCCAGAGGATGGAGCCGCGG/a																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528740	8528740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	69	455	0	ENST00000356435.5:c.392G>A	p.Gly131Asp	p.G131D	ENST00000356435		131	gGc/gAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0034977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	51	274	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0034977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	61	390	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68845757	68845757	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	81	331	0	ENST00000261769.5:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000261769	NM_004360.3	335	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685305	89685305	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	64	182	0	ENST00000371953.3:c.200T>G	p.Ile67Arg	p.I67R	ENST00000371953	NM_000314.4	67	aTa/aGa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682275	37682275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	112	424	0	ENST00000447079.4:c.3466T>A	p.Ser1156Thr	p.S1156T	ENST00000447079	NM_015083.1	1156	Tcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0035024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	107	316	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952088	178952088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	106	318	0	ENST00000263967.3:c.3143A>G	p.His1048Arg	p.H1048R	ENST00000263967	NM_006218.2	1048	cAt/cGt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522416	176522416	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	343	755	0	ENST00000292408.4:c.1605C>G	p.Asn535Lys	p.N535K	ENST00000292408	NM_213647.1	535	aaC/aaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0035024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	309	676	0	ENST00000269305.4:c.993+2T>C		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
NKX2-1	7080	MSKCC	GRCh37	14	36988516	36988516	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	200	794	0	ENST00000354822.5:c.137T>G	p.Ile46Ser	p.I46S	ENST00000354822	NM_001079668.2	46	aTc/aGc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169080	32169080	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	292	811	0	ENST00000375023.3:c.3953T>C	p.Val1318Ala	p.V1318A	ENST00000375023	NM_004557.3	1318	gTg/gCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	224	594	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0035027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	199	379	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0035027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	85	435	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625434	69625434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	186	899	3	ENST00000334134.2:c.359G>A	p.Arg120Gln	p.R120Q	ENST00000334134	NM_005247.2	120	cGg/cAg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46240655	46240656	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	T			P-0035027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	82	436	0	ENST00000334344.6:c.1515_1516delinsT	p.Ala506ArgfsTer10	p.A506Rfs*10	ENST00000334344	NM_152641.2	505	gtAGcg/gtTcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	116	492	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971110	21971110	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	48	308	0	ENST00000304494.5:c.248A>G	p.His83Arg	p.H83R	ENST00000304494	NM_000077.4	83	cAc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0035029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	227	880	0	ENST00000269305.4:c.376T>A	p.Tyr126Asn	p.Y126N	ENST00000269305	NM_001126112.2	126	Tac/Aac																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341328	89341328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	105	494	0	ENST00000301030.4:c.7607G>A	p.Arg2536Gln	p.R2536Q	ENST00000301030	NM_001256183.1	2536	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0032626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	104	498	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0032626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	15	407	1	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347957	347957	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149849071		P-0032626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	116	772	1	ENST00000262320.3:c.1549G>A	p.Val517Ile	p.V517I	ENST00000262320	NM_003502.3	517	Gta/Ata																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437376	110437376	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776945626		P-0032626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	35	136	0	ENST00000375856.3:c.1025C>T	p.Ser342Leu	p.S342L	ENST00000375856	NM_003749.2	342	tCg/tTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341583	89341583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	39	364	0	ENST00000301030.4:c.7487C>T	p.Ser2496Phe	p.S2496F	ENST00000301030	NM_001256183.1	2496	tCc/tTc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217257	7217258	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0032626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	197	502	0	ENST00000380728.2:c.447_448delAG	p.Arg149SerfsTer56	p.R149Sfs*56	ENST00000380728		149	agAGcc/agcc																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379775	17379775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	59	686	0	ENST00000359435.4:c.160G>A	p.Glu54Lys	p.E54K	ENST00000359435	NM_001033549.1	54	Gag/Aag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188386	32188386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	69	453	0	ENST00000375023.3:c.955G>A	p.Glu319Lys	p.E319K	ENST00000375023	NM_004557.3	319	Gag/Aag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410763	63410763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	31	544	0	ENST00000330258.3:c.2404G>A	p.Glu802Lys	p.E802K	ENST00000330258	NM_152424.3	802	Gag/Aag																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735431	204735431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	14	310	0	ENST00000302823.3:c.232G>A	p.Asp78Asn	p.D78N	ENST00000302823	NM_005214.4	78	Gac/Aac																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156732	20156732	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	181	389	0	ENST00000379607.5:c.25G>C	p.Gly9Arg	p.G9R	ENST00000379607	NM_001412.3	9	Ggt/Cgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106248	27106249	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	180	455	0	ENST00000324856.7:c.5860dup	p.Ile1954AsnfsTer9	p.I1954Nfs*9	ENST00000324856	NM_006015.4	1953	-/A																																																																															
ATM	472	MSKCC	GRCh37	11	108202221	108202221	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	108	365	0	ENST00000278616.4:c.7566A>T	p.Gln2522His	p.Q2522H	ENST00000278616	NM_000051.3	2522	caA/caT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	149	277	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0034859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	304	447	1	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974715	21974732	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCCCCCGCCTCCA	GCAGCGCCCCCGCCTCCA	-			P-0034859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	89	220	0	ENST00000304494.5:c.95_112delTGGAGGCGGGGGCGCTGC	p.Leu32_Leu37del	p.L32_L37del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCcc/ccc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44870205	44870205	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0034859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	128	196	0	ENST00000377967.4:c.385-1G>T		p.X129_splice	ENST00000377967	NM_021140.2	129																																																																																
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	265	666	0	ENST00000269305.4:c.731G>T	p.Gly244Val	p.G244V	ENST00000269305	NM_001126112.2	244	gGc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576863	7576863	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	91	654	0	ENST00000269305.4:c.983del	p.Phe328SerfsTer17	p.F328Sfs*17	ENST00000269305	NM_001126112.2	328	tTc/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	116	477	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0034992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	57	283	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520017		P-0034992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	121	462	0	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953369	17953369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	134	653	0	ENST00000458235.1:c.617G>A	p.Ser206Asn	p.S206N	ENST00000458235	NM_000215.3	206	aGc/aAc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250350	110250358	+	frameshift_variant	Frame_Shift_Del	DEL	GAATAAAGT	GAATAAAGT	AAAAAAGG			P-0034992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	131	635	3	ENST00000374672.4:c.317_325delinsCCTTTTTT	p.Asp106AlafsTer8	p.D106Afs*8	ENST00000374672	NM_004235.4	106	gACTTTATTCtc/gCCTTTTTTtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	372	472	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600392	10600392	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	402	759	1	ENST00000171111.5:c.1463A>T	p.Glu488Val	p.E488V	ENST00000171111	NM_203500.1	488	gAg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087358	27087363	+	frameshift_variant	Frame_Shift_Del	DEL	TTCAAT	TTCAAT	CGTG			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	132	457	1	ENST00000324856.7:c.1932_1937delinsCGTG	p.Ser645ValfsTer3	p.S645Vfs*3	ENST00000324856	NM_006015.4	644	ggTTCAATa/ggCGTGa																																																																															
WT1	7490	MSKCC	GRCh37	11	32449546	32449546	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	123	573	0	ENST00000332351.3:c.828C>G	p.Ser276Arg	p.S276R	ENST00000332351	NM_024426.4	276	agC/agG																																																																															
ATM	472	MSKCC	GRCh37	11	108235836	108235836	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	221	428	0	ENST00000278616.4:c.8878T>G	p.Trp2960Gly	p.W2960G	ENST00000278616	NM_000051.3	2960	Tgg/Ggg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118355592	118355592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	269	499	0	ENST00000534358.1:c.4234G>A	p.Glu1412Lys	p.E1412K	ENST00000534358	NM_005933.3	1412	Gaa/Aaa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435415	110435415	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	216	424	0	ENST00000375856.3:c.2986G>T	p.Gly996Cys	p.G996C	ENST00000375856	NM_003749.2	996	Ggc/Tgc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560224	95560225	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	71	214	0	ENST00000343455.3:c.5364_5364+1delinsTT		p.X1788_splice	ENST00000343455	NM_177438.2	1788																																																																																
ERCC4	2072	MSKCC	GRCh37	16	14041861	14041861	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	91	340	0	ENST00000311895.7:c.2408G>T	p.Cys803Phe	p.C803F	ENST00000311895	NM_005236.2	803	tGc/tTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29527613	29527613	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	92	462	0	ENST00000358273.4:c.1062G>C	p.Lys354Asn	p.K354N	ENST00000358273	NM_001042492.2	354	aaG/aaC																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99149845	99149845	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	165	312	0	ENST00000074304.5:c.157A>T	p.Ser53Cys	p.S53C	ENST00000074304	NM_001134224.1	53	Agt/Tgt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480437	89480438	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	175	326	0	ENST00000336596.2:c.2274_2275del	p.Leu758PhefsTer3	p.L758Ffs*3	ENST00000336596	NM_005233.5	758	ttGGtg/tttg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911563	134911563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	124	452	0	ENST00000398015.3:c.2028C>A	p.Asp676Glu	p.D676E	ENST00000398015	NM_004441.4	676	gaC/gaA																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969937	161969937	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	219	433	0	ENST00000366898.1:c.1032G>C	p.Glu344Asp	p.E344D	ENST00000366898	NM_004562.2	344	gaG/gaC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55229299	55229299	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	219	432	2	ENST00000275493.2:c.1606G>T	p.Val536Leu	p.V536L	ENST00000275493	NM_005228.3	536	Gtg/Ttg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508823	106508823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	146	407	0	ENST00000359195.3:c.817C>A	p.Arg273Ser	p.R273S	ENST00000359195	NM_002649.2	273	Cgc/Agc																																																																															
MET	4233	MSKCC	GRCh37	7	116411659	116411659	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	364	703	0	ENST00000397752.3:c.2838del	p.Leu946PhefsTer10	p.L946Ffs*10	ENST00000397752	NM_000245.2	946	ttA/tt																																																																															
SMO	6608	MSKCC	GRCh37	7	128852087	128852087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	329	599	0	ENST00000249373.3:c.2159G>A	p.Gly720Glu	p.G720E	ENST00000249373	NM_005631.4	720	gGa/gAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949766	151949766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	98	427	0	ENST00000262189.6:c.1334C>T	p.Ser445Phe	p.S445F	ENST00000262189	NM_170606.2	445	tCt/tTt																																																																															
LYN	4067	MSKCC	GRCh37	8	56863339	56863339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	147	276	0	ENST00000519728.1:c.486del	p.Gly163GlufsTer45	p.G163Efs*45	ENST00000519728	NM_002350.3	161	ttA/tt																																																																															
NBN	4683	MSKCC	GRCh37	8	90992995	90992995	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	236	439	0	ENST00000265433.3:c.447C>G	p.His149Gln	p.H149Q	ENST00000265433	NM_002485.4	149	caC/caG																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864210	117864210	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	229	515	0	ENST00000297338.2:c.1447del	p.Ile483LeufsTer6	p.I483Lfs*6	ENST00000297338	NM_006265.2	483	Att/tt																																																																															
ABL1	25	MSKCC	GRCh37	9	133738291	133738291	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	230	409	0	ENST00000318560.5:c.691A>G	p.Asn231Asp	p.N231D	ENST00000318560	NM_005157.4	231	Aac/Gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0035009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	267	379	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176145058	176145058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	156	226	0	ENST00000367669.3:c.553C>T	p.Pro185Ser	p.P185S	ENST00000367669	NM_022457.5	185	Cct/Tct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427299	49427341	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTGCATACGTTGCTGCTGCAGCTGCAGCTGCCTTTCCTGTA	AGCTGCATACGTTGCTGCTGCAGCTGCAGCTGCCTTTCCTGTA	-			P-0035009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	150	365	0	ENST00000301067.7:c.11147_11189del	p.Leu3716TrpfsTer19	p.L3716Wfs*19	ENST00000301067	NM_003482.3	3716	tTACAGGAAAGGCAGCTGCAGCTGCAGCAGCAACGTATGCAGCTg/tg																																																																															
AKT1	207	MSKCC	GRCh37	14	105236690	105236690	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	177	412	0	ENST00000349310.3:c.1431C>A	p.Ser477Arg	p.S477R	ENST00000349310	NM_001014432.1	477	agC/agA																																																																															
EZH1	2145	MSKCC	GRCh37	17	40855772	40855772	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	223	374	0	ENST00000428826.2:c.2084A>C	p.Asn695Thr	p.N695T	ENST00000428826		695	aAc/aCc																																																																															
ATR	545	MSKCC	GRCh37	3	142275285	142275285	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	195	315	0	ENST00000350721.4:c.2018G>C	p.Ser673Thr	p.S673T	ENST00000350721	NM_001184.3	673	aGt/aCt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971122	21971123	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0035009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	145	302	0	ENST00000304494.5:c.235_236delAC	p.Thr79ProfsTer40	p.T79Pfs*40	ENST00000304494	NM_000077.4	79	ACc/c																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650569	48650569	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	161	212	0	ENST00000376670.3:c.539T>C	p.Leu180Pro	p.L180P	ENST00000376670	NM_002049.3	180	cTc/cCc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0035014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	48	330	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CBFB	865	MSKCC	GRCh37	16	67063358	67063359	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	77	177	0	ENST00000412916.2:c.54dupT	p.Arg19Ter	p.R19*	ENST00000412916		16	-/T																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929412	44929415	+	frameshift_variant	Frame_Shift_Del	DEL	ACAA	ACAA	-			P-0035014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	111	474	0	ENST00000377967.4:c.2515_2518del	p.Asn839ValfsTer27	p.N839Vfs*27	ENST00000377967	NM_021140.2	838	ACAAac/ac																																																																															
CDH1	999	MSKCC	GRCh37	16	68849663	68849663	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0035014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	78	292	0	ENST00000261769.5:c.1565+1G>T		p.X522_splice	ENST00000261769	NM_004360.3	522																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66356332	66356332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	79	357	0	ENST00000273854.3:c.1165G>A	p.Val389Met	p.V389M	ENST00000273854	NM_004439.5	389	Gtg/Atg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023267	27023286	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGGCGGCAGCAGCGATGG	GGTGGCGGCAGCAGCGATGG	-			P-0035014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	30	136	0	ENST00000324856.7:c.378_397del	p.Ser128AlafsTer265	p.S128Afs*265	ENST00000324856	NM_006015.4	125	GGTGGCGGCAGCAGCGATGGg/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0035017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	179	361	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0035017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	396	493	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912149	114912149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	109	381	1	ENST00000543371.1:c.1219C>T	p.Arg407Ter	p.R407*	ENST00000543371	NM_001198531.1	407	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175758	112175765	+	frameshift_variant	Frame_Shift_Del	DEL	ACATTTTG	ACATTTTG	-			P-0035017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	54	274	0	ENST00000257430.4:c.4467_4474del	p.Leu1489PhefsTer22	p.L1489Ffs*22	ENST00000257430	NM_000038.5	1489	ttACATTTTGcc/ttcc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0035021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	72	313	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526755	31526755	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	11	536	0	ENST00000344624.3:c.285del	p.Cys96AlafsTer12	p.C96Afs*12	ENST00000344624		95	ccC/cc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782612	9782612	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	15	440	0	ENST00000377346.4:c.2374C>T	p.Gln792Ter	p.Q792*	ENST00000377346	NM_005026.3	792	Cag/Tag																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115272932	115272933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	11	559	0	ENST00000438362.2:c.1440dup	p.Glu481ArgfsTer8	p.E481Rfs*8	ENST00000438362	NM_001242891.1	480	-/A																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446827	49446827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	10	400	0	ENST00000301067.7:c.983C>T	p.Ala328Val	p.A328V	ENST00000301067	NM_003482.3	328	gCg/gTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610403	10610403	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	14	550	0	ENST00000171111.5:c.307T>C	p.Ser103Pro	p.S103P	ENST00000171111	NM_203500.1	103	Tcc/Ccc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540560	187540560	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	10	282	0	ENST00000441802.2:c.7180A>T	p.Ile2394Phe	p.I2394F	ENST00000441802	NM_005245.3	2394	Att/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577519	7577519	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			731	145	412	2	ENST00000269305.4:c.762delC	p.Ile255SerfsTer90	p.I255Sfs*90	ENST00000269305	NM_001126112.2	254	atC/at																																																																															
TERT	7015	MSKCC	GRCh37	5	1278782	1278782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			698	269	536	0	ENST00000310581.5:c.2260C>A	p.His754Asn	p.H754N	ENST00000310581	NM_198253.2	754	Cac/Aac																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876364	35876364	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			607	193	497	0	ENST00000303115.3:c.1156A>T	p.Arg386Trp	p.R386W	ENST00000303115	NM_002185.3	386	Agg/Tgg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570404	87570404	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			729	52	565	0	ENST00000277120.3:c.2144G>C	p.Arg715Pro	p.R715P	ENST00000277120		715	cGg/cCg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410603	63410603	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			851	133	602	0	ENST00000330258.3:c.2564A>G	p.His855Arg	p.H855R	ENST00000330258	NM_152424.3	855	cAt/cGt																																																																															
CBL	867	MSKCC	GRCh37	11	119148875	119148876	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GG	GG	T			P-0026552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			464	57	268	1	ENST00000264033.4:c.1096-1_1096delinsT		p.X366_splice	ENST00000264033	NM_005188.3	366																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	225	470	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0031335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	49	542	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0031335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	63	381	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0031335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	169	488	3	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	175	697	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39937104	39937104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	311	534	2	ENST00000378444.4:c.79G>A	p.Glu27Lys	p.E27K	ENST00000378444	NM_001123385.1	27	Gaa/Aaa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	316	728	2	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981241	201981241	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	280	747	0	ENST00000359651.3:c.320T>G	p.Leu107Arg	p.L107R	ENST00000359651		107	cTt/cGt																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813715	50813715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	144	742	0	ENST00000398568.2:c.1269G>A	p.Met423Ile	p.M423I	ENST00000398568	NM_001042412.1	423	atG/atA																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11113747	11113747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	112	581	0	ENST00000344626.4:c.1855G>A	p.Val619Met	p.V619M	ENST00000344626	NM_003072.3	619	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175656	112175656	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	127	392	0	ENST00000257430.4:c.4365del	p.Asn1455LysfsTer18	p.N1455Kfs*18	ENST00000257430	NM_000038.5	1455	aaT/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	177	513	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579419	7579420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	89	734	0	ENST00000269305.4:c.267dup	p.Ser90LeufsTer59	p.S90Lfs*59	ENST00000269305	NM_001126112.2	89	-/C																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543825	212543825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	54	432	0	ENST00000342788.4:c.1574G>A	p.Arg525His	p.R525H	ENST00000342788	NM_005235.2	525	cGc/cAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449745	8449745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	45	491	2	ENST00000356435.5:c.3968G>A	p.Arg1323His	p.R1323H	ENST00000356435		1323	cGc/cAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860098	151860098	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	104	504	0	ENST00000262189.6:c.10564A>G	p.Ile3522Val	p.I3522V	ENST00000262189	NM_170606.2	3522	Atc/Gtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	99	486	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0031393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	61	445	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099479	27099479	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0031393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	91	401	0	ENST00000324856.7:c.3715+1G>A		p.X1239_splice	ENST00000324856	NM_006015.4	1239																																																																																
TP53	7157	MSKCC	GRCh37	17	7578232	7578232	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	108	619	0	ENST00000269305.4:c.617delT	p.Leu206TrpfsTer41	p.L206Wfs*41	ENST00000269305	NM_001126112.2	206	tTg/tg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440207	49440207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0031393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	50	529	0	ENST00000301067.7:c.4419G>T	p.Trp1473Cys	p.W1473C	ENST00000301067	NM_003482.3	1473	tgG/tgT																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867355	45867365	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGCTCGTCT	GCTGCTCGTCT	-			P-0031393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	65	582	0	ENST00000391945.4:c.828_838del	p.Asp277ProfsTer97	p.D277Pfs*97	ENST00000391945	NM_000400.3	276	acAGACGAGCAGCgc/acgc																																																																															
APC	324	MSKCC	GRCh37	5	112116500	112116500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	49	337	0	ENST00000257430.4:c.545C>T	p.Thr182Ile	p.T182I	ENST00000257430	NM_000038.5	182	aCa/aTa																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	332	648	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
AR	367	MSKCC	GRCh37	X	66765159	66765185	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCA	-			P-0031403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	37	319	0	ENST00000374690.3:c.213_239del	p.Gln72_Gln80del	p.Q72_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874163	155874163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	128	610	1	ENST00000368323.3:c.368G>A	p.Arg123His	p.R123H	ENST00000368323	NM_006912.5	123	cGt/cAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874893	151874893	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	133	339	0	ENST00000262189.6:c.7645C>T	p.Gln2549Ter	p.Q2549*	ENST00000262189	NM_170606.2	2549	Cag/Tag																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42870101	42870102	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	139	626	0	ENST00000398585.3:c.70dup	p.Ser24PhefsTer11	p.S24Ffs*11	ENST00000398585	NM_001135099.1	24	tcc/tTcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0031432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	70	532	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs149680468		P-0031432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	31	318	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371799	55371820	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCCGCGCTGGGCCCCGAG	GGCGGCCGCGCTGGGCCCCGAG	-			P-0031432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	59	185	0	ENST00000297316.4:c.499_520del	p.Leu167TrpfsTer213	p.L167Wfs*213	ENST00000297316	NM_022454.3	163	caGGCGGCCGCGCTGGGCCCCGAG/ca																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631671	90631671	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	79	440	0	ENST00000330062.3:c.598G>C	p.Asp200His	p.D200H	ENST00000330062	NM_002168.2	200	Gat/Cat																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597451	10597451	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0031432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	91	538	0	ENST00000171111.5:c.1752C>G	p.Tyr584Ter	p.Y584*	ENST00000171111	NM_203500.1	584	taC/taG																																																																															
BRD4	23476	MSKCC	GRCh37	19	15383649	15383649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	51	304	1	ENST00000263377.2:c.262G>T	p.Asp88Tyr	p.D88Y	ENST00000263377	NM_058243.2	88	Gat/Tat																																																																															
AR	367	MSKCC	GRCh37	X	66765040	66765040	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	132	578	0	ENST00000374690.3:c.52A>G	p.Thr18Ala	p.T18A	ENST00000374690	NM_000044.3	18	Acc/Gcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	81	468	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175240	112175240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	25	243	0	ENST00000257430.4:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000257430	NM_000038.5	1317	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112136975	112136975	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0031454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	54	355	0	ENST00000257430.4:c.730-1G>A		p.X244_splice	ENST00000257430	NM_000038.5	244																																																																																
RUNX1	861	MSKCC	GRCh37	21	36206809	36206809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	42	422	0	ENST00000300305.3:c.703G>A	p.Ala235Thr	p.A235T	ENST00000300305		235	Gcc/Acc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119794	70119794	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	104	634	0	ENST00000245479.2:c.800del	p.Pro267LeufsTer12	p.P267Lfs*12	ENST00000245479	NM_000346.3	266	Ccc/cc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8633319	8633319	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0031454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	38	442	0	ENST00000356435.5:c.350G>A	p.Arg117Gln	p.R117Q	ENST00000356435		117	cGg/cAg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69129868	69129868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	58	245	1	ENST00000288368.4:c.4622C>T	p.Thr1541Met	p.T1541M	ENST00000288368	NM_024870.2	1541	aCg/aTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048590	180048590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	120	672	1	ENST00000261937.6:c.1972C>T	p.Arg658Trp	p.R658W	ENST00000261937	NM_182925.4	658	Cgg/Tgg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44923021	44923021	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	184	554	0	ENST00000377967.4:c.1882G>T	p.Ala628Ser	p.A628S	ENST00000377967	NM_021140.2	628	Gca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0031465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	203	557	1	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	118	346	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508682	106508682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	129	469	1	ENST00000359195.3:c.676C>T	p.Arg226Cys	p.R226C	ENST00000359195	NM_002649.2	226	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175256	112175265	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTTCCAGC	AAGTTCCAGC	TTT			P-0031465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	119	305	0	ENST00000257430.4:c.3965_3974delinsTTT	p.Glu1322ValfsTer2	p.E1322Vfs*2	ENST00000257430	NM_000038.5	1322	gAAGTTCCAGCa/gTTTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0031467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	183	653	1	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0031467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	44	512	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398123121		P-0031467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	67	285	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120003	70120003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	86	177	0	ENST00000245479.2:c.1005G>A	p.Trp335Ter	p.W335*	ENST00000245479	NM_000346.3	335	tgG/tgA																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633500	69633500	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	77	302	1	ENST00000334134.2:c.202C>A	p.Leu68Met	p.L68M	ENST00000334134	NM_005247.2	68	Ctg/Atg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191523	185191523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	306	624	0	ENST00000265026.3:c.2404C>T	p.Pro802Ser	p.P802S	ENST00000265026	NM_004721.4	802	Cct/Tct																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249390	153249390	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	120	574	0	ENST00000281708.4:c.1388C>G	p.Thr463Ser	p.T463S	ENST00000281708	NM_033632.3	463	aCt/aGt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs149680468		P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	277	400	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																															
BARD1	580	MSKCC	GRCh37	2	215593478	215593478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	189	297	0	ENST00000260947.4:c.2256G>T	p.Gln752His	p.Q752H	ENST00000260947	NM_000465.2	752	caG/caT																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021757	71021757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	298	382	0	ENST00000318789.4:c.1601G>T	p.Trp534Leu	p.W534L	ENST00000318789	NM_032682.5	534	tGg/tTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258832	16258832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	326	556	2	ENST00000375759.3:c.6097G>A	p.Ala2033Thr	p.A2033T	ENST00000375759	NM_015001.2	2033	Gct/Act																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259153	16259153	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	345	550	0	ENST00000375759.3:c.6418G>C	p.Asp2140His	p.D2140H	ENST00000375759	NM_015001.2	2140	Gat/Cat																																																																															
TET1	80312	MSKCC	GRCh37	10	70405171	70405171	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	345	507	0	ENST00000373644.4:c.2685G>T	p.Glu895Asp	p.E895D	ENST00000373644	NM_030625.2	895	gaG/gaT																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94211952	94211952	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	254	534	1	ENST00000323929.3:c.493A>T	p.Ser165Cys	p.S165C	ENST00000323929	NM_005591.3	165	Agt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434055	49434055	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	322	552	0	ENST00000301067.7:c.7498G>T	p.Ala2500Ser	p.A2500S	ENST00000301067	NM_003482.3	2500	Gcg/Tcg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32893213	32893213	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	101	262	0	ENST00000380152.3:c.68-1G>C		p.X23_splice	ENST00000380152		23																																																																																
SLX4	84464	MSKCC	GRCh37	16	3632627	3632627	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	227	727	0	ENST00000294008.3:c.5221A>G	p.Ser1741Gly	p.S1741G	ENST00000294008	NM_032444.2	1741	Agt/Ggt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521516	187521516	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	196	316	0	ENST00000441802.2:c.11641-2A>G		p.X3881_splice	ENST00000441802	NM_005245.3	3881																																																																																
TERT	7015	MSKCC	GRCh37	5	1295204	1295204	+	upstream_gene_variant	5'Flank	DEL	G	G	-			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	231	348	0				ENST00000310581	NM_198253.2																																																																																	
NSD1	64324	MSKCC	GRCh37	5	176721585	176721585	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	375	503	0	ENST00000439151.2:c.7216C>A	p.Pro2406Thr	p.P2406T	ENST00000439151	NM_022455.4	2406	Cct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0031600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	439	518	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0031600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	146	353	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175282	112175282	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	86	215	0	ENST00000257430.4:c.3991A>T	p.Arg1331Ter	p.R1331*	ENST00000257430	NM_000038.5	1331	Aga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976744	2976744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	241	516	0	ENST00000396946.4:c.1268G>A	p.Arg423Gln	p.R423Q	ENST00000396946	NM_032415.4	423	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112137030	112137030	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	172	476	0	ENST00000257430.4:c.784G>T	p.Glu262Ter	p.E262*	ENST00000257430	NM_000038.5	262	Gaa/Taa																																																																															
POLE	5426	MSKCC	GRCh37	12	133234534	133234534	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	194	355	0	ENST00000320574.5:c.3298C>G	p.Gln1100Glu	p.Q1100E	ENST00000320574	NM_006231.2	1100	Caa/Gaa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514655	103514655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	303	343	0	ENST00000355739.4:c.1156C>T	p.Arg386Trp	p.R386W	ENST00000355739	NM_000123.3	386	Cgg/Tgg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	164	441	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998934	11998934	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	269	282	0	ENST00000353533.5:c.436del	p.Met147TrpfsTer5	p.M147Wfs*5	ENST00000353533	NM_003010.3	146	Ctt/tt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55260478	55260478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	130	417	0	ENST00000275493.2:c.2645C>A	p.Ala882Glu	p.A882E	ENST00000275493	NM_005228.3	882	gCa/gAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425694	49425694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	105	672	0	ENST00000301067.7:c.12794G>A	p.Gly4265Asp	p.G4265D	ENST00000301067	NM_003482.3	4265	gGc/gAc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112939993	112939993	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	244	539	0	ENST00000351677.2:c.1645C>G	p.Leu549Val	p.L549V	ENST00000351677	NM_002834.3	549	Cta/Gta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	194	682	0	ENST00000269305.4:c.643A>G	p.Ser215Gly	p.S215G	ENST00000269305	NM_001126112.2	215	Agt/Ggt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578467	7578467	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	257	767	0	ENST00000269305.4:c.463A>C	p.Thr155Pro	p.T155P	ENST00000269305	NM_001126112.2	155	Acc/Ccc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047888	180047888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	287	844	0	ENST00000261937.6:c.2287G>A	p.Val763Met	p.V763M	ENST00000261937	NM_182925.4	763	Gtg/Atg																																																																															
FH	2271	MSKCC	GRCh37	1	241671940	241671940	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	190	570	0	ENST00000366560.3:c.701C>G	p.Thr234Ser	p.T234S	ENST00000366560	NM_000143.3	234	aCt/aGt																																																																															
MSH3	4437	MSKCC	GRCh37	5	80088574	80088574	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	170	517	0	ENST00000265081.6:c.2566A>G	p.Lys856Glu	p.K856E	ENST00000265081	NM_002439.4	856	Aaa/Gaa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026705	6026705	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1152	303	944	1	ENST00000265849.7:c.1691T>G	p.Val564Gly	p.V564G	ENST00000265849	NM_000535.5	564	gTt/gGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55225394	55225394	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	407	582	1	ENST00000275493.2:c.1246G>T	p.Asp416Tyr	p.D416Y	ENST00000275493	NM_005228.3	416	Gac/Tac																																																																															
HGF	3082	MSKCC	GRCh37	7	81399202	81399202	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0031665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	338	603	0	ENST00000222390.5:c.86C>A	p.Ala29Glu	p.A29E	ENST00000222390	NM_000601.4	29	gCa/gAa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526738	106526738	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0031665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	135	381	0	ENST00000359195.3:c.3030+1G>A		p.X1010_splice	ENST00000359195	NM_002649.2	1010																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151873361	151873361	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	142	381	0	ENST00000262189.6:c.9177G>C	p.Leu3059Phe	p.L3059F	ENST00000262189	NM_170606.2	3059	ttG/ttC																																																																															
CDH1	999	MSKCC	GRCh37	16	68857304	68857304	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0031743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	72	429	0	ENST00000261769.5:c.1939C>T	p.Gln647Ter	p.Q647*	ENST00000261769	NM_004360.3	647	Caa/Taa																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085897	16085897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	119	673	2	ENST00000281043.3:c.1073C>T	p.Pro358Leu	p.P358L	ENST00000281043	NM_005378.4	358	cCg/cTg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191119	185191119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	138	666	0	ENST00000265026.3:c.2000C>T	p.Ala667Val	p.A667V	ENST00000265026	NM_004721.4	667	gCc/gTc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517394	176517394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	31	461	0	ENST00000292408.4:c.95C>T	p.Pro32Leu	p.P32L	ENST00000292408	NM_213647.1	32	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0031802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	156	474	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112888189	112888189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	148	495	0	ENST00000351677.2:c.205G>A	p.Glu69Lys	p.E69K	ENST00000351677	NM_002834.3	69	Gag/Aag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0031802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	99	303	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0031802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	73	367	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	83	219	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175352	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0031802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	25	205	0	ENST00000257430.4:c.4062_4063del	p.Ser1355PhefsTer19	p.S1355Ffs*19	ENST00000257430	NM_000038.5	1354	TTt/t																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0031802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	191	544	0	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	151	565	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522416	176522416	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	272	650	0	ENST00000292408.4:c.1605C>G	p.Asn535Lys	p.N535K	ENST00000292408	NM_213647.1	535	aaC/aaG																																																																															
APC	324	MSKCC	GRCh37	5	112175072	112175072	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	58	170	0	ENST00000257430.4:c.3781A>C	p.Thr1261Pro	p.T1261P	ENST00000257430	NM_000038.5	1261	Act/Cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0031803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	133	582	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398255	25398255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	21	396	0	ENST00000256078.4:c.64C>A	p.Gln22Lys	p.Q22K	ENST00000256078	NM_033360.2	22	Cag/Aag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277230	41277230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	38	246	0	ENST00000349496.5:c.1699G>A	p.Glu567Lys	p.E567K	ENST00000349496	NM_001904.3	567	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0031803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	30	315	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18699324	18699324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	15	303	0	ENST00000266497.5:c.3425G>A	p.Arg1142His	p.R1142H	ENST00000266497		1142	cGt/cAt																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51436108	51436108	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	55	350	0	ENST00000262662.1:c.68G>C	p.Ser23Thr	p.S23T	ENST00000262662		23	aGt/aCt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865611	57865611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	113	633	0	ENST00000228682.2:c.3088G>A	p.Glu1030Lys	p.E1030K	ENST00000228682	NM_005269.2	1030	Gaa/Aaa																																																																															
AKT1	207	MSKCC	GRCh37	14	105241496	105241496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	99	555	0	ENST00000349310.3:c.484G>A	p.Gly162Ser	p.G162S	ENST00000349310	NM_001014432.1	162	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0031832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	154	589	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	85	468	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	88	328	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114917829	114917829	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0031832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	106	456	0	ENST00000543371.1:c.1318+1G>A		p.X440_splice	ENST00000543371	NM_001198531.1	440																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71949133	71949141	+	inframe_deletion	In_Frame_Del	DEL	CATGAGTGC	CATGAGTGC	-			P-0031832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	213	711	0	ENST00000298229.2:c.3601_3609del	p.Met1201_Ala1203del	p.M1201_A1203del	ENST00000298229	NM_001567.3	1200	ggCATGAGTGCc/ggc																																																																															
APC	324	MSKCC	GRCh37	5	112173860	112173860	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	42	268	0	ENST00000257430.4:c.2569G>T	p.Gly857Ter	p.G857*	ENST00000257430	NM_000038.5	857	Gga/Tga																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967972	93967972	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	49	450	0	ENST00000369303.4:c.1955T>G	p.Leu652Trp	p.L652W	ENST00000369303	NM_004440.3	652	tTg/tGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0031859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	26	459	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0031859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	36	825	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0031940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	31	521	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0031940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	48	622	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0031999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	170	619	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185183540	185183540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	43	395	1	ENST00000265026.3:c.1394C>T	p.Ala465Val	p.A465V	ENST00000265026	NM_004721.4	465	gCg/gTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246116	46246116	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	94	399	0	ENST00000334344.6:c.4210C>T	p.Gln1404Ter	p.Q1404*	ENST00000334344	NM_152641.2	1404	Caa/Taa																																																																															
SDHC	6391	MSKCC	GRCh37	1	161310416	161310416	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	73	567	0	ENST00000367975.2:c.212A>G	p.His71Arg	p.H71R	ENST00000367975	NM_003001.3	71	cAc/cGc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350040	15350040	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1231	121	1050	0	ENST00000263377.2:c.3612C>G	p.Ser1204Arg	p.S1204R	ENST00000263377	NM_058243.2	1204	agC/agG																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891328	101891328	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	115	702	0	ENST00000374994.4:c.289A>C	p.Thr97Pro	p.T97P	ENST00000374994	NM_004612.2	97	Aca/Cca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	97	470	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	161	385	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0032056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	271	583	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
TET2	54790	MSKCC	GRCh37	4	106182928	106182928	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	105	258	0	ENST00000380013.4:c.3967G>T	p.Glu1323Ter	p.E1323*	ENST00000380013	NM_001127208.2	1323	Gag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593478	48593479	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0032056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	114	313	0	ENST00000342988.3:c.1231_1232del	p.Ser411LeufsTer17	p.S411Lfs*17	ENST00000342988	NM_005359.5	410	cAG/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0032073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	149	630	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29002008	29002008	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141378173		P-0032073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	92	445	0	ENST00000282397.4:c.1157G>A	p.Arg386His	p.R386H	ENST00000282397	NM_002019.4	386	cGt/cAt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285139	15285141	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0032073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	1176	794	0	ENST00000263388.2:c.4474_4476del	p.Glu1492del	p.E1492del	ENST00000263388	NM_000435.2	1492	GAG/-																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638467	176638467	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	54	663	2	ENST00000439151.2:c.3067C>T	p.Arg1023Ter	p.R1023*	ENST00000439151	NM_022455.4	1023	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0032124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	156	617	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99454561	99454561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	43	570	1	ENST00000268035.6:c.1480C>T	p.His494Tyr	p.H494Y	ENST00000268035	NM_000875.3	494	Cat/Tat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032542	47032542	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	178	643	0	ENST00000329236.7:c.217C>T	p.Gln73Ter	p.Q73*	ENST00000329236	NM_001204466.1	73	Cag/Tag																																																																															
ARAF	369	MSKCC	GRCh37	X	47422649	47422649	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	41	636	0	ENST00000377045.4:c.121G>T	p.Val41Phe	p.V41F	ENST00000377045	NM_001654.4	41	Gtc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	101	483	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0032182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	984	528	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0032182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	220	621	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5239059	5239059	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	155	634	0	ENST00000357368.4:c.1720G>C	p.Asp574His	p.D574H	ENST00000357368	NM_002850.3	574	Gac/Cac																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508725	106508725	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	72	520	0	ENST00000359195.3:c.719C>A	p.Thr240Asn	p.T240N	ENST00000359195	NM_002649.2	240	aCc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	627	645	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
HGF	3082	MSKCC	GRCh37	7	81359014	81359014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	156	465	1	ENST00000222390.5:c.947C>A	p.Thr316Asn	p.T316N	ENST00000222390	NM_000601.4	316	aCt/aAt																																																																															
MITF	4286	MSKCC	GRCh37	3	70014176	70014176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	96	461	0	ENST00000352241.4:c.1340G>A	p.Gly447Asp	p.G447D	ENST00000352241	NM_198159.2	447	gGc/gAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292580	15292580	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867505691		P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	138	620	0	ENST00000263388.2:c.2599G>A	p.Gly867Ser	p.G867S	ENST00000263388	NM_000435.2	867	Ggc/Agc																																																																															
NF1	4763	MSKCC	GRCh37	17	29679396	29679396	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	53	350	0	ENST00000358273.4:c.7579G>T	p.Gly2527Trp	p.G2527W	ENST00000358273	NM_001042492.2	2527	Ggg/Tgg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245225	46245225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	45	406	1	ENST00000334344.6:c.3319G>A	p.Ala1107Thr	p.A1107T	ENST00000334344	NM_152641.2	1107	Gca/Aca																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949104	71949104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	326	505	2	ENST00000298229.2:c.3571G>T	p.Gly1191Trp	p.G1191W	ENST00000298229	NM_001567.3	1191	Ggg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108151877	108151877	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	128	284	0	ENST00000278616.4:c.3558A>T	p.Glu1186Asp	p.E1186D	ENST00000278616	NM_000051.3	1186	gaA/gaT																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436703	110436703	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	120	737	0	ENST00000375856.3:c.1698C>A	p.Asp566Glu	p.D566E	ENST00000375856	NM_003749.2	566	gaC/gaA																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029555	14029555	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	76	281	0	ENST00000311895.7:c.1767del	p.Gln590SerfsTer14	p.Q590Sfs*14	ENST00000311895	NM_005236.2	589	cGg/cg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198268489	198268489	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	108	333	0	ENST00000335508.6:c.1540-1G>C		p.X514_splice	ENST00000335508	NM_012433.2	514																																																																																
SETD2	29072	MSKCC	GRCh37	3	47163932	47163932	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	75	360	0	ENST00000409792.3:c.2194T>G	p.Leu732Val	p.L732V	ENST00000409792	NM_014159.6	732	Ttg/Gtg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499326	89499326	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	54	303	0	ENST00000336596.2:c.2497-1G>T		p.X833_splice	ENST00000336596	NM_005233.5	833																																																																																
WWTR1	25937	MSKCC	GRCh37	3	149243914	149243914	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	66	341	0	ENST00000360632.3:c.906-2A>T		p.X302_splice	ENST00000360632	NM_015472.4	302																																																																																
KDR	3791	MSKCC	GRCh37	4	55960974	55960974	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	220	349	0	ENST00000263923.4:c.2966A>T	p.Glu989Val	p.E989V	ENST00000263923	NM_002253.2	989	gAg/gTg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056039	26056039	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs61742488		P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	57	358	0	ENST00000343677.2:c.618G>C	p.Lys206Asn	p.K206N	ENST00000343677	NM_005319.3	206	aaG/aaC																																																																															
PARK2	5071	MSKCC	GRCh37	6	161771157	161771157	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	266	498	0	ENST00000366898.1:c.1372A>T	p.Met458Leu	p.M458L	ENST00000366898	NM_004562.2	458	Atg/Ttg																																																																															
PARK2	5071	MSKCC	GRCh37	6	161990386	161990386	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	93	326	0	ENST00000366898.1:c.933+1G>T		p.X311_splice	ENST00000366898	NM_004562.2	311																																																																																
ETV1	2115	MSKCC	GRCh37	7	13975456	13975456	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	386	341	0	ENST00000405192.2:c.431del	p.Pro144GlnfsTer111	p.P144Qfs*111	ENST00000405192	NM_001163147.1	144	cCa/ca																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345971	152345971	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	185	463	0	ENST00000359321.1:c.599A>C	p.Gln200Pro	p.Q200P	ENST00000359321	NM_005431.1	200	cAg/cCg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228340	53228340	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	251	442	1	ENST00000375401.3:c.2062G>T	p.Gly688Cys	p.G688C	ENST00000375401	NM_004187.3	688	Ggt/Tgt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412500	63412500	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	95	610	0	ENST00000330258.3:c.667G>T	p.Ala223Ser	p.A223S	ENST00000330258	NM_152424.3	223	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577571	7577571	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	57	504	0	ENST00000269305.4:c.710T>A	p.Met237Lys	p.M237K	ENST00000269305	NM_001126112.2	237	aTg/aAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0032401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	290	384	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	255	522	1	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907432	32907432	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	85	230	0	ENST00000380152.3:c.1817C>A	p.Pro606Gln	p.P606Q	ENST00000380152		606	cCg/cAg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437892	110437892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	38	76	0	ENST00000375856.3:c.509C>A	p.Ala170Asp	p.A170D	ENST00000375856	NM_003749.2	170	gCc/gAc																																																																															
BLM	641	MSKCC	GRCh37	15	91295124	91295124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	122	322	0	ENST00000355112.3:c.907C>T	p.Pro303Ser	p.P303S	ENST00000355112	NM_000057.2	303	Cct/Tct																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439897	56439908	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGCTCACCGGC	CTGCTCACCGGC	-			P-0032401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	171	358	0	ENST00000407977.2:c.684_687+8del		p.X228_splice	ENST00000407977		228																																																																																
DDR2	4921	MSKCC	GRCh37	1	162746028	162746028	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	37	269	0	ENST00000367921.3:c.2151A>T	p.Leu717Phe	p.L717F	ENST00000367921	NM_006182.2	717	ttA/ttT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	253	404	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075301	16075301	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	33	273	0	ENST00000268712.3:c.251A>G	p.Glu84Gly	p.E84G	ENST00000268712	NM_006311.3	84	gAa/gGa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	69	97	2	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	202	319	0	ENST00000342988.3:c.1157G>T	p.Gly386Val	p.G386V	ENST00000342988	NM_005359.5	386	gGt/gTt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26022394	26022394	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	264	351	2	ENST00000435504.4:c.263C>A	p.Pro88Gln	p.P88Q	ENST00000435504		88	cCg/cAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010449	48010451	+	inframe_deletion	In_Frame_Del	DEL	GGG	GGG	-			P-0032462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	110	344	0	ENST00000234420.5:c.77_79del	p.Arg26_Ala27delinsThr	p.R26_A27delinsT	ENST00000234420	NM_000179.2	26	aGGGcc/acc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248599	212248599	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1281587425		P-0032462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	43	451	0	ENST00000342788.4:c.3668A>G	p.Lys1223Arg	p.K1223R	ENST00000342788	NM_005235.2	1223	aAg/aGg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332853	153332853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	178	417	0	ENST00000281708.4:c.103C>T	p.Arg35Cys	p.R35C	ENST00000281708	NM_033632.3	35	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0032462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	101	241	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175360	112175360	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	127	207	0	ENST00000257430.4:c.4069G>T	p.Gly1357Ter	p.G1357*	ENST00000257430	NM_000038.5	1357	Gga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112178544	112178544	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	71	265	0	ENST00000257430.4:c.7253G>T	p.Arg2418Ile	p.R2418I	ENST00000257430	NM_000038.5	2418	aGa/aTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376670	8376670	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	131	376	0	ENST00000356435.5:c.4443A>C	p.Gln1481His	p.Q1481H	ENST00000356435		1481	caA/caC																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564131	139564131	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs117990760		P-0032462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	193	471	2	ENST00000308874.7:c.271G>T	p.Gly91Cys	p.G91C	ENST00000308874		91	Ggc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0032466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	290	677	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579585	7579585	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	297	588	0	ENST00000269305.4:c.102del	p.Leu35CysfsTer9	p.L35Cfs*9	ENST00000269305	NM_001126112.2	34	ccC/cc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937670	36937670	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	301	762	0	ENST00000361632.4:c.1068G>C	p.Trp356Cys	p.W356C	ENST00000361632		356	tgG/tgC																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726969	46726969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	107	654	0	ENST00000371975.4:c.803C>T	p.Ser268Phe	p.S268F	ENST00000371975	NM_003579.3	268	tCt/tTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446079	49446079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	217	983	1	ENST00000301067.7:c.1387G>A	p.Glu463Lys	p.E463K	ENST00000301067	NM_003482.3	463	Gag/Aag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43714152	43714152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	170	812	0	ENST00000382044.4:c.4001G>A	p.Ser1334Asn	p.S1334N	ENST00000382044	NM_001141980.1	1334	aGc/aAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349651	89349651	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	201	900	0	ENST00000301030.4:c.3299C>G	p.Ser1100Cys	p.S1100C	ENST00000301030	NM_001256183.1	1100	tCt/tGt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164850	47164850	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	33	344	0	ENST00000409792.3:c.1276C>G	p.His426Asp	p.H426D	ENST00000409792	NM_014159.6	426	Cat/Gat																																																																															
ATR	545	MSKCC	GRCh37	3	142184017	142184017	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	40	555	0	ENST00000350721.4:c.6963C>G	p.Phe2321Leu	p.F2321L	ENST00000350721	NM_001184.3	2321	ttC/ttG																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149433730	149433730	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	288	722	0	ENST00000286301.3:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000286301	NM_005211.3	941	Gag/Tag																																																																															
MET	4233	MSKCC	GRCh37	7	116397813	116397813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	88	703	1	ENST00000397752.3:c.2087C>T	p.Thr696Ile	p.T696I	ENST00000397752	NM_000245.2	696	aCa/aTa																																																																															
BTK	695	MSKCC	GRCh37	X	100611828	100611828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	126	707	0	ENST00000308731.7:c.1293G>A	p.Met431Ile	p.M431I	ENST00000308731	NM_000061.2	431	atG/atA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0032479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	143	488	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0032479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	56	722	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949351	71949351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	62	584	0	ENST00000298229.2:c.3731C>T	p.Pro1244Leu	p.P1244L	ENST00000298229	NM_001567.3	1244	cCg/cTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290235	15290235	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	51	691	0	ENST00000263388.2:c.3400G>T	p.Gly1134Trp	p.G1134W	ENST00000263388	NM_000435.2	1134	Ggg/Tgg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155052	55155052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	40	375	0	ENST00000257290.5:c.2761G>T	p.Ala921Ser	p.A921S	ENST00000257290	NM_006206.4	921	Gct/Tct																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149499127	149499127	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0032479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	33	513	0	ENST00000261799.4:c.2701G>T	p.Gly901Cys	p.G901C	ENST00000261799	NM_002609.3	901	Ggc/Tgc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911584	101911584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	35	372	0	ENST00000374994.4:c.1509G>A	p.Met503Ile	p.M503I	ENST00000374994	NM_004612.2	503	atG/atA																																																																															
MED12	9968	MSKCC	GRCh37	X	70356216	70356216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	73	712	0	ENST00000374080.3:c.5111G>T	p.Trp1704Leu	p.W1704L	ENST00000374080		1704	tGg/tTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038781	47038783	+	stop_gained	Nonsense_Mutation	ONP	GGG	GGG	TGT			P-0032479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	57	685	0	ENST00000329236.7:c.557_559delinsTGT	p.Arg186_Glu187delinsLeuTer	p.R186_E187delinsL*	ENST00000329236	NM_001204466.1	186	cGGGag/cTGTag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0032572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	219	732	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779056	3779056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	135	626	0	ENST00000262367.5:c.5992G>A	p.Val1998Met	p.V1998M	ENST00000262367	NM_004380.2	1998	Gtg/Atg																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39321509	39321509	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	130	580	0	ENST00000373001.3:c.512T>C	p.Met171Thr	p.M171T	ENST00000373001	NM_022157.3	171	aTg/aCg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347165	347165	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	232	843	1	ENST00000262320.3:c.1846A>G	p.Ser616Gly	p.S616G	ENST00000262320	NM_003502.3	616	Agc/Ggc																																																																															
CASP8	841	MSKCC	GRCh37	2	202141677	202141677	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	81	281	0	ENST00000358485.4:c.965C>A	p.Thr322Lys	p.T322K	ENST00000358485	NM_001080125.1	322	aCa/aAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0032632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	14	478	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
APC	324	MSKCC	GRCh37	5	112154907	112154907	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	29	665	0	ENST00000257430.4:c.1178C>G	p.Ser393Ter	p.S393*	ENST00000257430	NM_000038.5	393	tCa/tGa																																																																															
RARA	5914	MSKCC	GRCh37	17	38510560	38510560	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	30	487	0	ENST00000254066.5:c.814C>G	p.Arg272Gly	p.R272G	ENST00000254066	NM_000964.3	272	Cgg/Ggg																																																																															
TET1	80312	MSKCC	GRCh37	10	70451518	70451518	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	29	690	0	ENST00000373644.4:c.6358G>C	p.Val2120Leu	p.V2120L	ENST00000373644	NM_030625.2	2120	Gtg/Ctg																																																																															
ATM	472	MSKCC	GRCh37	11	108127045	108127045	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	10	465	0	ENST00000278616.4:c.2228C>A	p.Ser743Ter	p.S743*	ENST00000278616	NM_000051.3	743	tCa/tAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373623	118373623	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	13	483	0	ENST00000534358.1:c.7016A>G	p.His2339Arg	p.H2339R	ENST00000534358	NM_005933.3	2339	cAt/cGt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719492	61719492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	14	584	0	ENST00000401558.2:c.1691C>G	p.Thr564Ser	p.T564S	ENST00000401558	NM_003400.3	564	aCt/aGt																																																																															
ATRX	546	MSKCC	GRCh37	X	76888739	76888739	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	15	320	0	ENST00000373344.5:c.5090G>C	p.Ser1697Thr	p.S1697T	ENST00000373344	NM_000489.3	1697	aGt/aCt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0032634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	19	509	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0032634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	24	447	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	54	486	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0032671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	80	843	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0032676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	66	311	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47084145	47084146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	110	489	0	ENST00000409792.3:c.7143dupC	p.Ser2382LeufsTer47	p.S2382Lfs*47	ENST00000409792	NM_014159.6	2381	-/C																																																																															
MTOR	2475	MSKCC	GRCh37	1	11292537	11292537	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	32	365	0	ENST00000361445.4:c.2470A>G	p.Ile824Val	p.I824V	ENST00000361445	NM_004958.3	824	Atc/Gtc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162722920	162722920	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	37	626	0	ENST00000367921.3:c.118C>T	p.Gln40Ter	p.Q40*	ENST00000367921	NM_006182.2	40	Cag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098922	47098924	+	frameshift_variant	Frame_Shift_Del	DEL	TAG	TAG	AC			P-0032676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	141	670	2	ENST00000409792.3:c.6350_6352delinsGT	p.Ser2117CysfsTer30	p.S2117Cfs*30	ENST00000409792	NM_014159.6	2117	tCTAca/tGTca																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0032694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	41	536	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0032694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	98	388	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115437	115115437	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	178	710	0	ENST00000257566.3:c.889A>C	p.Asn297His	p.N297H	ENST00000257566	NM_016569.3	297	Aac/Cac																																																																															
SUFU	51684	MSKCC	GRCh37	10	104353406	104353407	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0032694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	82	772	1	ENST00000369902.3:c.611_612delinsTT	p.Cys204Phe	p.C204F	ENST00000369902	NM_016169.3	204	tGC/tTT																																																																															
CDH1	999	MSKCC	GRCh37	16	68772310	68772316	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CAGAGGT	CAGAGGT	-			P-0032694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	86	634	0	ENST00000261769.5:c.159_163+2del		p.X53_splice	ENST00000261769	NM_004360.3	53																																																																																
EP300	2033	MSKCC	GRCh37	22	41565596	41565596	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	68	502	0	ENST00000263253.7:c.4262A>G	p.Tyr1421Cys	p.Y1421C	ENST00000263253	NM_001429.3	1421	tAt/tGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106434	27106434	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	190	499	1	ENST00000324856.7:c.6046del	p.Leu2016CysfsTer14	p.L2016Cfs*14	ENST00000324856	NM_006015.4	2015	atC/at																																																																															
MGA	23269	MSKCC	GRCh37	15	41989018	41989018	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	157	493	0	ENST00000219905.7:c.1810C>T	p.Gln604Ter	p.Q604*	ENST00000219905	NM_001164273.1	604	Cag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42042395	42042395	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	201	473	0	ENST00000219905.7:c.6590del	p.Ala2197GlufsTer5	p.A2197Efs*5	ENST00000219905	NM_001164273.1	2197	gCa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0032743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	103	455	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	154	329	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519930		P-0032743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	115	434	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																															
CIC	23152	MSKCC	GRCh37	19	42791757	42791757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	93	519	0	ENST00000575354.2:c.643C>T	p.Arg215Trp	p.R215W	ENST00000575354	NM_015125.3	215	Cgg/Tgg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0032743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	67	402	2	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877391	40877391	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372713520		P-0032743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	137	550	0	ENST00000373198.4:c.2305G>A	p.Val769Met	p.V769M	ENST00000373198	NM_133170.3	769	Gtg/Atg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26828881	26828881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	33	270	0	ENST00000381527.3:c.103G>A	p.Val35Ile	p.V35I	ENST00000381527	NM_001260.1	35	Gtc/Atc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724436	43724436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	172	664	0	ENST00000382044.4:c.3631C>A	p.Pro1211Thr	p.P1211T	ENST00000382044	NM_001141980.1	1211	Cca/Aca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821615	72821638	+	inframe_deletion	In_Frame_Del	DEL	GCCACCGCCGCCGCCGCCGCCACT	GCCACCGCCGCCGCCGCCGCCACT	-			P-0032743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	23	45	0	ENST00000268489.5:c.10537_10560del	p.Ser3513_Gly3520del	p.S3513_G3520del	ENST00000268489	NM_006885.3	3513	AGTGGCGGCGGCGGCGGCGGTGGC/-																																																																															
APC	324	MSKCC	GRCh37	5	112175511	112175511	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	154	332	0	ENST00000257430.4:c.4220G>T	p.Ser1407Ile	p.S1407I	ENST00000257430	NM_000038.5	1407	aGt/aTt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056509	26056509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	45	211	0	ENST00000343677.2:c.148G>A	p.Ala50Thr	p.A50T	ENST00000343677	NM_005319.3	50	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	310	511	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0032747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	324	742	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
RB1	5925	MSKCC	GRCh37	13	48934152	48934152	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0032747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	103	348	0	ENST00000267163.4:c.610delG		p.X204_splice	ENST00000267163	NM_000321.2	204																																																																																
BRCA2	675	MSKCC	GRCh37	13	32893231	32893231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	12	318	0	ENST00000380152.3:c.85C>T	p.Leu29Phe	p.L29F	ENST00000380152		29	Ctt/Ttt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993723	72993723	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	126	554	0	ENST00000268489.5:c.322C>G	p.Leu108Val	p.L108V	ENST00000268489	NM_006885.3	108	Ctg/Gtg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913384		P-0032817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	136	322	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602314	10602314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	203	745	0	ENST00000171111.5:c.1264G>A	p.Asp422Asn	p.D422N	ENST00000171111	NM_203500.1	422	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs878854073		P-0032817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	253	443	0	ENST00000269305.4:c.673-1G>A		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
TET2	54790	MSKCC	GRCh37	4	106156840	106156840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	64	350	0	ENST00000380013.4:c.1741C>T	p.Arg581Cys	p.R581C	ENST00000380013	NM_001127208.2	581	Cgt/Tgt																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246078863	246078863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	212	616	0	ENST00000388985.4:c.782G>T	p.Cys261Phe	p.C261F	ENST00000388985		261	tGt/tTt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929117	32929117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	130	488	0	ENST00000380152.3:c.7127C>T	p.Ala2376Val	p.A2376V	ENST00000380152		2376	gCa/gTa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15278210	15278210	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	138	561	0	ENST00000263388.2:c.5212G>C	p.Gly1738Arg	p.G1738R	ENST00000263388	NM_000435.2	1738	Ggc/Cgc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2979403	2979403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	157	601	0	ENST00000396946.4:c.844G>A	p.Glu282Lys	p.E282K	ENST00000396946	NM_032415.4	282	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	145	486	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221243	1221243	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	205	612	0	ENST00000326873.7:c.766G>T	p.Glu256Ter	p.E256*	ENST00000326873	NM_000455.4	256	Gaa/Taa																																																																															
RET	5979	MSKCC	GRCh37	10	43608310	43608311	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0032823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	171	993	1	ENST00000355710.3:c.1658_1659delinsTT	p.Arg553Ile	p.R553I	ENST00000355710	NM_020975.4	553	aGG/aTT																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741924	17741924	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	65	157	0	ENST00000250003.3:c.595G>C	p.Ala199Pro	p.A199P	ENST00000250003	NM_002478.4	199	Gcg/Ccg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348125	348126	+	missense_variant	Missense_Mutation	DNP	CC	CC	TG			P-0032823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	211	765	1	ENST00000262320.3:c.1380_1381delinsCA	p.Asp461Asn	p.D461N	ENST00000262320	NM_003502.3	460	cgGGat/cgCAat																																																																															
FLCN	201163	MSKCC	GRCh37	17	17122347	17122347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	67	489	0	ENST00000285071.4:c.1048C>T	p.Arg350Trp	p.R350W	ENST00000285071	NM_144997.5	350	Cgg/Tgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610441	10610442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	255	730	0	ENST00000171111.5:c.268dup	p.Ala90GlyfsTer37	p.A90Gfs*37	ENST00000171111	NM_203500.1	90	gcc/gGcc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661202	227661202	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	170	823	0	ENST00000305123.5:c.2253C>A	p.Tyr751Ter	p.Y751*	ENST00000305123	NM_005544.2	751	taC/taA																																																																															
ATR	545	MSKCC	GRCh37	3	142231194	142231194	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	69	608	0	ENST00000350721.4:c.4760A>G	p.His1587Arg	p.H1587R	ENST00000350721	NM_001184.3	1587	cAt/cGt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671646	30671646	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	358	766	0	ENST00000376406.3:c.5314G>T	p.Glu1772Ter	p.E1772*	ENST00000376406	NM_014641.2	1772	Gag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0033110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	19	525	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576858	7576858	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	84	733	8	ENST00000269305.4:c.988del	p.Leu330PhefsTer15	p.L330Ffs*15	ENST00000269305	NM_001126112.2	330	Ctt/tt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519972		P-0033135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	197	496	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023750	27023750	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	133	343	0	ENST00000324856.7:c.856A>T	p.Thr286Ser	p.T286S	ENST00000324856	NM_006015.4	286	Act/Tct																																																																															
ATM	472	MSKCC	GRCh37	11	108121516	108121516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	165	401	1	ENST00000278616.4:c.1324C>T	p.Leu442Phe	p.L442F	ENST00000278616	NM_000051.3	442	Ctt/Ttt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163408	32163408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	255	636	0	ENST00000375023.3:c.5818C>T	p.Arg1940Cys	p.R1940C	ENST00000375023	NM_004557.3	1940	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	332	751	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417337	139417337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	261	677	0	ENST00000277541.6:c.707C>T	p.Thr236Met	p.T236M	ENST00000277541	NM_017617.3	236	aCg/aTg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926888	112926888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	436	630	2	ENST00000351677.2:c.1508G>T	p.Gly503Val	p.G503V	ENST00000351677	NM_002834.3	503	gGg/gTg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249315	110249315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	423	850	0	ENST00000374672.4:c.1258C>T	p.His420Tyr	p.H420Y	ENST00000374672	NM_004235.4	420	Cac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112164604	112164604	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	224	445	0	ENST00000257430.4:c.1682delA	p.Lys561ArgfsTer9	p.K561Rfs*9	ENST00000257430	NM_000038.5	560	Aaa/aa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023288	31023288	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	290	602	0	ENST00000375687.4:c.2773C>T	p.Gln925Ter	p.Q925*	ENST00000375687	NM_015338.5	925	Cag/Tag																																																																															
SDHB	6390	MSKCC	GRCh37	1	17380502	17380502	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	297	576	0	ENST00000375499.3:c.13G>T	p.Val5Phe	p.V5F	ENST00000375499	NM_003000.2	5	Gtc/Ttc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163306620	163306620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	285	450	0	ENST00000271452.3:c.417G>A	p.Met139Ile	p.M139I	ENST00000271452	NM_145697.2	139	atG/atA																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940144	71940144	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	305	680	0	ENST00000298229.2:c.529G>T	p.Gly177Trp	p.G177W	ENST00000298229	NM_001567.3	177	Ggg/Tgg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	441001	441001	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	229	422	0	ENST00000399788.2:c.1757T>G	p.Phe586Cys	p.F586C	ENST00000399788	NM_001042603.1	586	tTc/tGc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29005332	29005332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	368	724	2	ENST00000282397.4:c.929C>A	p.Thr310Asn	p.T310N	ENST00000282397	NM_002019.4	310	aCt/aAt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103528044	103528044	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	206	437	0	ENST00000355739.4:c.3352G>C	p.Ala1118Pro	p.A1118P	ENST00000355739	NM_000123.3	1118	Gct/Cct																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610304	10610304	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	404	814	0	ENST00000171111.5:c.406del	p.Leu136SerfsTer21	p.L136Sfs*21	ENST00000171111	NM_203500.1	136	Ctc/tc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225360629	225360632	+	frameshift_variant	Frame_Shift_Del	DEL	GTGT	GTGT	-			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	301	528	0	ENST00000264414.4:c.1759_1762del	p.Thr587GlyfsTer12	p.T587Gfs*12	ENST00000264414	NM_003590.4	587	ACACgg/gg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561088	9561088	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	230	520	0	ENST00000353224.5:c.694T>A	p.Phe232Ile	p.F232I	ENST00000353224	NM_177990.2	232	Ttc/Atc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390109	89390109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	238	447	0	ENST00000336596.2:c.858G>T	p.Lys286Asn	p.K286N	ENST00000336596	NM_005233.5	286	aaG/aaT																																																																															
KDR	3791	MSKCC	GRCh37	4	55968529	55968529	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	275	525	0	ENST00000263923.4:c.2134G>T	p.Gly712Cys	p.G712C	ENST00000263923	NM_002253.2	712	Ggc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112174590	112174590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	295	538	0	ENST00000257430.4:c.3299C>T	p.Ser1100Phe	p.S1100F	ENST00000257430	NM_000038.5	1100	tCt/tTt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056715	180056715	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	208	619	0	ENST00000261937.6:c.797G>C	p.Trp266Ser	p.W266S	ENST00000261937	NM_182925.4	266	tGg/tCg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818288	32818288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	269	586	1	ENST00000354258.4:c.1237G>A	p.Glu413Lys	p.E413K	ENST00000354258	NM_000593.5	413	Gaa/Aaa																																																																															
SESN1	27244	MSKCC	GRCh37	6	109309858	109309858	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	427	671	0	ENST00000436639.2:c.1457A>T	p.Gln486Leu	p.Q486L	ENST00000436639	NM_014454.2	486	cAg/cTg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141549486	141549486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	220	569	0	ENST00000220592.5:c.2102G>A	p.Gly701Glu	p.G701E	ENST00000220592	NM_012154.3	701	gGg/gAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486065	8486065	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	301	681	0	ENST00000356435.5:c.2752C>A	p.Pro918Thr	p.P918T	ENST00000356435		918	Cca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0033171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	128	630	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	168	476	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42794583	42794583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	63	803	1	ENST00000575354.2:c.1663G>A	p.Gly555Arg	p.G555R	ENST00000575354	NM_015125.3	555	Gga/Aga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971095	21971095	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	42	436	0	ENST00000304494.5:c.263del	p.Glu88GlyfsTer58	p.E88Gfs*58	ENST00000304494	NM_000077.4	88	gAg/gg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137293675	137293675	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	124	751	0	ENST00000481739.1:c.226T>G	p.Ser76Ala	p.S76A	ENST00000481739	NM_002957.4	76	Tcc/Gcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0033183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	79	533	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	125	778	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991697	72991699	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0033183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	11	153	1	ENST00000268489.5:c.2346_2348del	p.Ala784del	p.A784del	ENST00000268489	NM_006885.3	782	gcGGCa/gca																																																																															
APC	324	MSKCC	GRCh37	5	112173956	112173957	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0033183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	66	339	0	ENST00000257430.4:c.2666_2667del	p.Lys889SerfsTer22	p.K889Sfs*22	ENST00000257430	NM_000038.5	889	AAa/a																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602367	10602367	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	142	705	3	ENST00000171111.5:c.1211C>A	p.Ser404Ter	p.S404*	ENST00000171111	NM_203500.1	404	tCg/tAg																																																																															
YAP1	10413	MSKCC	GRCh37	11	102080285	102080286	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0033183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	93	483	0	ENST00000282441.5:c.1022_1023del	p.Pro341GlnfsTer9	p.P341Qfs*9	ENST00000282441	NM_001130145.2	341	cCA/c																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912810	32912811	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0033183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	72	432	0	ENST00000380152.3:c.4319_4320del	p.Lys1440ArgfsTer4	p.K1440Rfs*4	ENST00000380152		1440	AAa/a																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620583	52620583	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0033183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	126	540	0	ENST00000394830.3:c.3170C>G	p.Ser1057Ter	p.S1057*	ENST00000394830	NM_018313.4	1057	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	212	741	0	ENST00000269305.4:c.398T>A	p.Met133Lys	p.M133K	ENST00000269305	NM_001126112.2	133	aTg/aAg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509127	66509127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	20	257	0	ENST00000273854.3:c.200G>C	p.Arg67Pro	p.R67P	ENST00000273854	NM_004439.5	67	cGc/cCc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983148	201983148	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	75	389	0	ENST00000359651.3:c.997A>G	p.Met333Val	p.M333V	ENST00000359651		333	Atg/Gtg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206651113	206651113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	76	565	0	ENST00000367120.3:c.723G>T	p.Lys241Asn	p.K241N	ENST00000367120	NM_014002.3	241	aaG/aaT																																																																															
CCND2	894	MSKCC	GRCh37	12	4409092	4409092	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	70	271	0	ENST00000261254.3:c.787C>T	p.Gln263Ter	p.Q263*	ENST00000261254	NM_001759.3	263	Cag/Tag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246497	46246497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	28	230	0	ENST00000334344.6:c.4591C>T	p.Pro1531Ser	p.P1531S	ENST00000334344	NM_152641.2	1531	Cca/Tca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49439712	49439712	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	74	506	0	ENST00000301067.7:c.4732A>G	p.Lys1578Glu	p.K1578E	ENST00000301067	NM_003482.3	1578	Aaa/Gaa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89857825	89857825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	69	481	0	ENST00000389301.3:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000389301	NM_000135.2	449	Gca/Aca																																																																															
RASA1	5921	MSKCC	GRCh37	5	86642488	86642488	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0033202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	34	302	0	ENST00000274376.6:c.1050-1G>C		p.X350_splice	ENST00000274376	NM_002890.2	350																																																																																
EPHA7	2045	MSKCC	GRCh37	6	93965668	93965668	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	47	382	0	ENST00000369303.4:c.2260T>C	p.Tyr754His	p.Y754H	ENST00000369303	NM_004440.3	754	Tat/Cat																																																																															
PREX2	80243	MSKCC	GRCh37	8	68995517	68995517	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	93	574	1	ENST00000288368.4:c.1921G>T	p.Gly641Cys	p.G641C	ENST00000288368	NM_024870.2	641	Ggt/Tgt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900243	101900243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	57	291	0	ENST00000374994.4:c.677G>T	p.Gly226Val	p.G226V	ENST00000374994	NM_004612.2	226	gGa/gTa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	31	283	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	92	666	1	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376262	225376262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	77	380	0	ENST00000264414.4:c.692C>T	p.Ser231Leu	p.S231L	ENST00000264414	NM_003590.4	231	tCa/tTa																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376271	225376271	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	69	339	0	ENST00000264414.4:c.683A>G	p.Asn228Ser	p.N228S	ENST00000264414	NM_003590.4	228	aAt/aGt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143159038	143159038	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	26	287	0	ENST00000262992.4:c.815A>G	p.His272Arg	p.H272R	ENST00000262992	NM_001101669.1	272	cAc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0033320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	560	871	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0033320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	1509	447	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518264	204518271	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGAAAT	CAAGAAAT	-			P-0033320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	485	455	0	ENST00000367182.3:c.927_934del	p.Lys310Ter	p.K310*	ENST00000367182	NM_001278516.1	309	tgCAAGAAATtt/tgtt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118391571	118391571	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	43	344	1	ENST00000534358.1:c.11484G>T	p.Lys3828Asn	p.K3828N	ENST00000534358	NM_005933.3	3828	aaG/aaT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144467	11144467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	135	679	0	ENST00000344626.4:c.3799G>A	p.Gly1267Ser	p.G1267S	ENST00000344626	NM_003072.3	1267	Ggc/Agc																																																																															
AKT2	208	MSKCC	GRCh37	19	40741019	40741020	+	missense_variant	Missense_Mutation	DNP	CT	CT	AC			P-0033320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	144	824	1	ENST00000392038.2:c.1298_1299delinsGT	p.Glu433Gly	p.E433G	ENST00000392038	NM_001626.4	433	gAG/gGT																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72890197	72890197	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0033320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	58	380	0	ENST00000325599.8:c.485A>T	p.Gln162Leu	p.Q162L	ENST00000325599	NM_018130.2	162	cAg/cTg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0033323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	59	508	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468289	50468289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	45	472	0	ENST00000331340.3:c.1524C>A	p.His508Gln	p.H508Q	ENST00000331340	NM_006060.4	508	caC/caA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	1194	395	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0033356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	557	823	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100425	8100425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	570	831	2	ENST00000346208.3:c.404delC	p.Pro135ArgfsTer60	p.P135Rfs*60	ENST00000346208		133	taC/ta																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987067	36987067	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	917	867	2	ENST00000354822.5:c.622C>T	p.Arg208Ter	p.R208*	ENST00000354822	NM_001079668.2	208	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0033356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	374	311	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
MYOD1	4654	MSKCC	GRCh37	11	17741739	17741739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	204	696	2	ENST00000250003.3:c.410C>T	p.Ser137Leu	p.S137L	ENST00000250003	NM_002478.4	137	tCg/tTg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30303934	30303934	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	187	490	0	ENST00000262643.3:c.170G>T	p.Cys57Phe	p.C57F	ENST00000262643	NM_001238.2	57	tGt/tTt																																																																															
CENPA	1058	MSKCC	GRCh37	2	27009147	27009147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	150	103	1	ENST00000335756.4:c.83G>A	p.Arg28Gln	p.R28Q	ENST00000335756	NM_001809.3	28	cGg/cAg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279815	46279847	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCA	-			P-0033356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1359	294	614	0	ENST00000371998.3:c.3759_3791del	p.Gln1266_Gln1276del	p.Q1266_Q1276del	ENST00000371998		1247	atGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAg/atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0033380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	26	539	1	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987196	36987199	+	frameshift_variant	Frame_Shift_Del	DEL	TGCC	TGCC	GCA			P-0033380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	54	1173	2	ENST00000354822.5:c.490_493delinsTGC	p.Gly164CysfsTer2	p.G164Cfs*2	ENST00000354822	NM_001079668.2	164	GGCAtg/TGCtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	63	164	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624260	89624260	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	29	158	0	ENST00000371953.3:c.34A>C	p.Asn12His	p.N12H	ENST00000371953	NM_000314.4	12	Aac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	76	678	0	ENST00000269305.4:c.734G>C	p.Gly245Ala	p.G245A	ENST00000269305	NM_001126112.2	245	gGc/gCc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0033491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	83	850	2	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118390494	118390494	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	26	473	0	ENST00000534358.1:c.11308G>T	p.Glu3770Ter	p.E3770*	ENST00000534358	NM_005933.3	3770	Gaa/Taa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713444	30713444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	36	623	0	ENST00000359013.4:c.844G>A	p.Glu282Lys	p.E282K	ENST00000359013	NM_001024847.2	282	Gag/Aag																																																																															
MET	4233	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0033584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	258	850	0	ENST00000397752.3:c.3028+3A>G		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
NSD1	64324	MSKCC	GRCh37	5	176721462	176721462	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	125	503	0	ENST00000439151.2:c.7093A>G	p.Ile2365Val	p.I2365V	ENST00000439151	NM_022455.4	2365	Ata/Gta																																																																															
MET	4233	MSKCC	GRCh37	7	116412031	116412038	+	frameshift_variant	Frame_Shift_Del	DEL	ACTTTTCC	ACTTTTCC	-			P-0033584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	238	856	0	ENST00000397752.3:c.3017_3024del	p.Thr1006ArgfsTer6	p.T1006Rfs*6	ENST00000397752	NM_000245.2	1006	ACTTTTCCa/a																																																																															
MED12	9968	MSKCC	GRCh37	X	70352389	70352389	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0033584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	95	424	0	ENST00000374080.3:c.4415+1G>T		p.X1472_splice	ENST00000374080		1472																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0033612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	84	403	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112111345	112111345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	23	129	0	ENST00000257430.4:c.442C>T	p.Leu148Phe	p.L148F	ENST00000257430	NM_000038.5	148	Ctt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578518	7578518	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs28934875		P-0033660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	519	685	0	ENST00000269305.4:c.412G>C	p.Ala138Pro	p.A138P	ENST00000269305	NM_001126112.2	138	Gcc/Ccc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450367	50450367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	123	373	1	ENST00000331340.3:c.551G>A	p.Arg184Gln	p.R184Q	ENST00000331340	NM_006060.4	184	cGg/cAg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056199	26056210	+	inframe_deletion	In_Frame_Del	DEL	TTCTTAGCGCTC	TTCTTAGCGCTC	-			P-0033660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	282	439	0	ENST00000343677.2:c.447_458del	p.Ser150_Lys153del	p.S150_K153del	ENST00000343677	NM_005319.3	149	aaGAGCGCTAAGAAa/aaa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65332734	65332734	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0033660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	140	366	0	ENST00000342505.4:c.805A>T	p.Lys269Ter	p.K269*	ENST00000342505	NM_002227.2	269	Aaa/Taa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	431694	431694	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	40	508	0	ENST00000399788.2:c.2315A>T	p.Asp772Val	p.D772V	ENST00000399788	NM_001042603.1	772	gAt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519985		P-0033667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	11	533	0	ENST00000269305.4:c.857A>G	p.Glu286Gly	p.E286G	ENST00000269305	NM_001126112.2	286	gAa/gGa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16247477	16247477	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0033667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	24	158	0	ENST00000375759.3:c.1748A>G	p.Lys583Arg	p.K583R	ENST00000375759	NM_015001.2	583	aAg/aGg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778083	3778084	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0033667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	80	747	0	ENST00000262367.5:c.6964_6965del	p.Ser2322ArgfsTer18	p.S2322Rfs*18	ENST00000262367	NM_004380.2	2322	TCa/a																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115261278	115261278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	354	558	0	ENST00000438362.2:c.2443C>T	p.Arg815Cys	p.R815C	ENST00000438362	NM_001242891.1	815	Cgc/Tgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89724870	89725106	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTAAGAAGAGGGTCATTTAAAAGGCCTCTTAAAGATCATGTTTGTTACAGTGCTTAAAAATTAATATGTTCATCTGCAAAATGGAATAAAAAATCTGTTAAAAATATATTTCACTAAATAGTTTAAGATGAGTCATATTTGTGGGTTTTCATTTTAAATTTTCTTTCTCTAGGTGAAGCTGTACTTCACAAAAACAGTAGAGGAGCCGTCAAATCCAGAGGCTAGCAGTTCAACT	TCTTAAGAAGAGGGTCATTTAAAAGGCCTCTTAAAGATCATGTTTGTTACAGTGCTTAAAAATTAATATGTTCATCTGCAAAATGGAATAAAAAATCTGTTAAAAATATATTTCACTAAATAGTTTAAGATGAGTCATATTTGTGGGTTTTCATTTTAAATTTTCTTTCTCTAGGTGAAGCTGTACTTCACAAAAACAGTAGAGGAGCCGTCAAATCCAGAGGCTAGCAGTTCAACT	-			P-0033767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			6	90	58	0	ENST00000371953.3:c.1027-171_1092del		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																																
RRAS2	22800	MSKCC	GRCh37	11	14316349	14316350	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0033767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	331	572	0	ENST00000256196.4:c.255_256delinsCT	p.Gly86Cys	p.G86C	ENST00000256196		85	acTGgc/acCTgc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798103	32798105	+	frameshift_variant	Frame_Shift_Del	DEL	GTC	GTC	TT			P-0033767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	226	707	1	ENST00000374899.4:c.1574_1576delinsAA	p.Gly525GlufsTer36	p.G525Efs*36	ENST00000374899	NM_018833.2	525	gGACag/gAAag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681118	117681118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	202	453	0	ENST00000368508.3:c.3502G>T	p.Asp1168Tyr	p.D1168Y	ENST00000368508	NM_002944.2	1168	Gat/Tat																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	205	404	0	ENST00000346208.3:c.878T>G	p.Met293Arg	p.M293R	ENST00000346208		293	aTg/aGg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061508	38061508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	68	300	0	ENST00000250448.2:c.481A>G	p.Thr161Ala	p.T161A	ENST00000250448	NM_004496.3	161	Acg/Gcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	299	549	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412375	139412375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	175	542	0	ENST00000277541.6:c.1270G>A	p.Glu424Lys	p.E424K	ENST00000277541	NM_017617.3	424	Gag/Aag																																																																															
PAX5	5079	MSKCC	GRCh37	9	36846865	36846865	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	97	400	0	ENST00000358127.4:c.1074G>A	p.Trp358Ter	p.W358*	ENST00000358127	NM_001280556.1	358	tgG/tgA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629589	187629589	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	149	613	0	ENST00000441802.2:c.1393C>T	p.Gln465Ter	p.Q465*	ENST00000441802	NM_005245.3	465	Cag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42042616	42042616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	240	373	0	ENST00000219905.7:c.6811C>T	p.Gln2271Ter	p.Q2271*	ENST00000219905	NM_001164273.1	2271	Cag/Tag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641487	18641487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	106	320	0	ENST00000266497.5:c.2486C>T	p.Ser829Phe	p.S829F	ENST00000266497		829	tCc/tTc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678406	88678406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	486	779	0	ENST00000360948.2:c.1130C>T	p.Thr377Ile	p.T377I	ENST00000360948	NM_001012338.2	377	aCc/aTc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28980009	28980009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	117	515	0	ENST00000282397.4:c.1459G>A	p.Glu487Lys	p.E487K	ENST00000282397	NM_002019.4	487	Gaa/Aaa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133538	55133538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	126	367	0	ENST00000257290.5:c.842C>T	p.Thr281Met	p.T281M	ENST00000257290	NM_006206.4	281	aCg/aTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202131410	202131411	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	125	416	0	ENST00000358485.4:c.378_379delinsTT	p.Arg127Ter	p.R127*	ENST00000358485	NM_001080125.1	126	ttCCga/ttTTga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444849	49444849	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	187	652	0	ENST00000301067.7:c.2617C>T	p.Gln873Ter	p.Q873*	ENST00000301067	NM_003482.3	873	Caa/Taa																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839984	27839984	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	46	447	0	ENST00000328488.2:c.110A>T	p.Lys37Met	p.K37M	ENST00000328488	NM_003533.2	37	aAg/aTg																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073454	8073455	+	missense_variant	Missense_Mutation	DNP	GG	GG	AC			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	121	478	1	ENST00000377482.5:c.1204_1205delinsGT	p.Pro402Val	p.P402V	ENST00000377482	NM_018948.3	402	CCa/GTa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258953	16258953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	146	471	0	ENST00000375759.3:c.6218C>T	p.Ser2073Phe	p.S2073F	ENST00000375759	NM_015001.2	2073	tCc/tTc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726935	46726935	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	129	413	0	ENST00000371975.4:c.769G>A	p.Gly257Arg	p.G257R	ENST00000371975	NM_003579.3	257	Gga/Aga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120484246	120484246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	147	457	0	ENST00000256646.2:c.2884G>A	p.Gly962Arg	p.G962R	ENST00000256646	NM_024408.3	962	Ggg/Agg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631107	69631107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	142	499	0	ENST00000334134.2:c.305G>A	p.Arg102Lys	p.R102K	ENST00000334134	NM_005247.2	102	aGg/aAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424091	49424092	+	missense_variant	Missense_Mutation	DNP	AG	AG	GA			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	191	701	0	ENST00000301067.7:c.13970_13971delinsTC	p.Ser4657Phe	p.S4657F	ENST00000301067	NM_003482.3	4657	tCT/tTC																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562757	21562758	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	140	412	0	ENST00000382592.4:c.1161_1162delinsAA	p.Ala388Thr	p.A388T	ENST00000382592	NM_014572.2	387	gaGGcg/gaAAcg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3830870	3830870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	121	470	0	ENST00000262367.5:c.1686G>A	p.Met562Ile	p.M562I	ENST00000262367	NM_004380.2	562	atG/atA																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858232	9858232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	133	463	1	ENST00000330684.3:c.3169G>A	p.Ala1057Thr	p.A1057T	ENST00000330684	NM_001134407.1	1057	Gcc/Acc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89809309	89809310	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	128	489	1	ENST00000389301.3:c.3663_3664delinsAA	p.Asn1221_Pro1222delinsLysThr	p.N1221_P1222delinsKT	ENST00000389301	NM_000135.2	1221	aaCCcg/aaAAcg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244458	5244458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	212	770	0	ENST00000357368.4:c.1024G>A	p.Glu342Lys	p.E342K	ENST00000357368	NM_002850.3	342	Gag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170803	11170804	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	137	533	1	ENST00000344626.4:c.4851_4852delinsTT	p.Arg1618Ter	p.R1618*	ENST00000344626	NM_003072.3	1617	agCCga/agTTga																																																																															
BBC3	27113	MSKCC	GRCh37	19	47725044	47725044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	200	681	0	ENST00000449228.1:c.700C>T	p.Pro234Ser	p.P234S	ENST00000449228	NM_001127240.2	234	Ccg/Tcg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082362	16082362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	235	715	0	ENST00000281043.3:c.176C>T	p.Pro59Leu	p.P59L	ENST00000281043	NM_005378.4	59	cCc/cTc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966142	25966142	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	146	586	0	ENST00000435504.4:c.3064A>G	p.Lys1022Glu	p.K1022E	ENST00000435504		1022	Aaa/Gaa																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62323149	62323150	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	97	400	0	ENST00000508582.2:c.2683_2684delinsTT	p.Pro895Leu	p.P895L	ENST00000508582		895	CCg/TTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41573121	41573122	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	122	678	1	ENST00000263253.7:c.5406_5407delinsAA	p.Val1803Met	p.V1803M	ENST00000263253	NM_001429.3	1802	ccGGtg/ccAAtg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49932929	49932930	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	113	734	0	ENST00000296474.3:c.3014_3015delinsTT	p.Ala1005Val	p.A1005V	ENST00000296474	NM_002447.2	1005	gCC/gTT																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521672	89521672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	156	412	0	ENST00000336596.2:c.2749G>A	p.Gly917Ser	p.G917S	ENST00000336596	NM_005233.5	917	Ggt/Agt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539093	187539093	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	150	567	0	ENST00000441802.2:c.8647T>C	p.Tyr2883His	p.Y2883H	ENST00000441802	NM_005245.3	2883	Tac/Cac																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31449510	31449510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	88	294	0	ENST00000344624.3:c.2699C>T	p.Pro900Leu	p.P900L	ENST00000344624		900	cCa/cTa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176718972	176718973	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	51	167	1	ENST00000439151.2:c.6276_6277delinsAA	p.Glu2093Lys	p.E2093K	ENST00000439151	NM_022455.4	2092	acGGaa/acAAaa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979317	93979317	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	157	396	0	ENST00000369303.4:c.1511A>T	p.Asn504Ile	p.N504I	ENST00000369303	NM_004440.3	504	aAt/aTt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117679033	117679033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	205	472	1	ENST00000368508.3:c.3788C>T	p.Pro1263Leu	p.P1263L	ENST00000368508	NM_002944.2	1263	cCc/cTc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157469821	157469822	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	186	592	0	ENST00000346085.5:c.2615_2616delinsTT	p.Pro872Leu	p.P872L	ENST00000346085	NM_020732.3	872	cCC/cTT																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146931	38146931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	212	695	0	ENST00000317025.8:c.3211C>T	p.Pro1071Ser	p.P1071S	ENST00000317025	NM_023034.1	1071	Cct/Tct																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741687	145741688	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	201	698	2	ENST00000428558.2:c.815_816delinsTT	p.Pro272Leu	p.P272L	ENST00000428558	NM_004260.3	272	cCC/cTT																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98220311	98220311	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	85	264	0	ENST00000331920.6:c.3152G>A	p.Trp1051Ter	p.W1051*	ENST00000331920	NM_000264.3	1051	tGg/tAg																																																																															
ABL1	25	MSKCC	GRCh37	9	133760962	133760963	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	159	635	2	ENST00000318560.5:c.3285_3286delinsAA	p.Glu1096Lys	p.E1096K	ENST00000318560	NM_005157.4	1095	cgGGag/cgAAag																																																																															
BTK	695	MSKCC	GRCh37	X	100626635	100626635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	118	182	0	ENST00000308731.7:c.295C>T	p.Pro99Ser	p.P99S	ENST00000308731	NM_000061.2	99	Cct/Tct																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170804	11170804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	137	533	0	ENST00000344626.4:c.4852C>T	p.Arg1618Ter	p.R1618*	ENST00000344626	NM_003072.3	1618	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0033822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	71	546	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0033822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	235	623	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125496724	125496724	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	67	370	0	ENST00000428830.2:c.62del	p.Gly21GlufsTer7	p.G21Efs*7	ENST00000428830	NM_001114121.2	21	Gga/ga																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62305351	62305351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	109	785	1	ENST00000508582.2:c.896G>A	p.Gly299Glu	p.G299E	ENST00000508582		299	gGa/gAa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0033834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	124	531	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
ATM	472	MSKCC	GRCh37	11	108115681	108115681	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	72	414	0	ENST00000278616.4:c.829G>T	p.Glu277Ter	p.E277*	ENST00000278616	NM_000051.3	277	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112170746	112170747	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	98	692	0	ENST00000257430.4:c.1847dup	p.Leu616PhefsTer18	p.L616Ffs*18	ENST00000257430	NM_000038.5	614	-/T																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922321	178922321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	226	358	0	ENST00000263967.3:c.1090G>A	p.Gly364Arg	p.G364R	ENST00000263967	NM_006218.2	364	Gga/Aga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115462	115115462	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0033888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	230	461	0	ENST00000257566.3:c.865-1G>C		p.X289_splice	ENST00000257566	NM_016569.3	289																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0033900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	197	565	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68771330	68771330	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	70	273	0	ENST00000261769.5:c.12G>A	p.Trp4Ter	p.W4*	ENST00000261769	NM_004360.3	4	tgG/tgA																																																																															
AR	367	MSKCC	GRCh37	X	66766561	66766561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	49	646	0	ENST00000374690.3:c.1573G>A	p.Gly525Ser	p.G525S	ENST00000374690	NM_000044.3	525	Ggc/Agc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012385	152012386	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	127	344	0	ENST00000262189.6:c.427dup	p.Ser143LysfsTer27	p.S143Kfs*27	ENST00000262189	NM_170606.2	143	agt/aAgt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696637	47696637	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	46	655	0	ENST00000347630.2:c.311T>G	p.Phe104Cys	p.F104C	ENST00000347630	NM_001007230.1	104	tTc/tGc																																																																															
MGA	23269	MSKCC	GRCh37	15	42019411	42019411	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	23	704	2	ENST00000219905.7:c.3464G>T	p.Arg1155Leu	p.R1155L	ENST00000219905	NM_001164273.1	1155	cGa/cTa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061018	38061033	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGCGCCCTCTAGCT	GGCGCGCCCTCTAGCT	-			P-0034085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	29	157	0	ENST00000250448.2:c.956_971del	p.Gln319ArgfsTer26	p.Q319Rfs*26	ENST00000250448	NM_004496.3	319	cAGCTAGAGGGCGCGCCg/cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	48	675	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0034100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	32	868	1	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	86	446	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1223059	1223059	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	170	670	0	ENST00000326873.7:c.996G>A	p.Trp332Ter	p.W332*	ENST00000326873	NM_000455.4	332	tgG/tgA																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006897	47006897	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0034111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	113	763	2	ENST00000329236.7:c.17G>A	p.Arg6His	p.R6H	ENST00000329236	NM_001204466.1	6	cGt/cAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29508804	29508804	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0034111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	57	420	0	ENST00000358273.4:c.730+1G>T		p.X244_splice	ENST00000358273	NM_001042492.2	244																																																																																
ELF3	1999	MSKCC	GRCh37	1	201982309	201982309	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0034111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	287	641	0	ENST00000359651.3:c.689-1G>T		p.X230_splice	ENST00000359651		230																																																																																
GATA3	2625	MSKCC	GRCh37	10	8100321	8100321	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	147	731	0	ENST00000346208.3:c.296del	p.Gly99AlafsTer96	p.G99Afs*96	ENST00000346208		99	Ggc/gc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701847	43701847	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0034111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	74	285	0	ENST00000382044.4:c.5398C>T	p.Gln1800Ter	p.Q1800*	ENST00000382044	NM_001141980.1	1800	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610288	10610301	+	frameshift_variant	Frame_Shift_Del	DEL	TAGGCGAATTCAAT	TAGGCGAATTCAAT	-			P-0034111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	181	839	0	ENST00000171111.5:c.409_422del	p.Ile137HisfsTer32	p.I137Hfs*32	ENST00000171111	NM_203500.1	137	ATTGAATTCGCCTAc/c																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121204	11121204	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0034111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	144	565	0	ENST00000344626.4:c.2271C>G	p.Tyr757Ter	p.Y757*	ENST00000344626	NM_003072.3	757	taC/taG																																																																															
AXL	558	MSKCC	GRCh37	19	41726610	41726610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	136	574	0	ENST00000301178.4:c.155G>T	p.Gly52Val	p.G52V	ENST00000301178	NM_021913.4	52	gGc/gTc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855600	45855600	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	95	564	0	ENST00000391945.4:c.2057G>T	p.Arg686Leu	p.R686L	ENST00000391945	NM_000400.3	686	cGt/cTt																																																																															
ALK	238	MSKCC	GRCh37	2	30143348	30143348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	89	454	1	ENST00000389048.3:c.178G>T	p.Val60Leu	p.V60L	ENST00000389048	NM_004304.4	60	Gtg/Ttg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32184794	32184794	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	108	543	0	ENST00000375023.3:c.1789C>A	p.Pro597Thr	p.P597T	ENST00000375023	NM_004557.3	597	Cca/Aca																																																																															
CARD11	84433	MSKCC	GRCh37	7	2972183	2972183	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	117	682	0	ENST00000396946.4:c.1556C>A	p.Thr519Lys	p.T519K	ENST00000396946	NM_032415.4	519	aCa/aAa																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248120	110248120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	85	474	0	ENST00000374672.4:c.1352C>A	p.Thr451Lys	p.T451K	ENST00000374672	NM_004235.4	451	aCg/aAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63409887	63409887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	60	438	2	ENST00000330258.3:c.3280C>A	p.His1094Asn	p.H1094N	ENST00000330258	NM_152424.3	1094	Cac/Aac																																																																															
AR	367	MSKCC	GRCh37	X	66766042	66766042	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	141	795	0	ENST00000374690.3:c.1054G>T	p.Ala352Ser	p.A352S	ENST00000374690	NM_000044.3	352	Gca/Tca																																																																															
STAG2	10735	MSKCC	GRCh37	X	123184095	123184095	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	82	518	0	ENST00000218089.9:c.953T>C	p.Met318Thr	p.M318T	ENST00000218089	NM_001042749.1	318	aTg/aCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	61	393	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	139	413	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175749	112175756	+	frameshift_variant	Frame_Shift_Del	DEL	TACTTTAT	TACTTTAT	-			P-0034138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	71	305	0	ENST00000257430.4:c.4461_4468delTTTATTAC	p.Leu1488PhefsTer23	p.L1488Ffs*23	ENST00000257430	NM_000038.5	1486	gaTACTTTATta/gata																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476286	88476286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	30	482	0	ENST00000360948.2:c.1846G>A	p.Val616Ile	p.V616I	ENST00000360948	NM_001012338.2	616	Gtc/Atc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	30	187	0	ENST00000281708.4:c.1436G>T	p.Arg479Leu	p.R479L	ENST00000281708	NM_033632.3	479	cGa/cTa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	26	443	0	ENST00000342988.3:c.1081del	p.Arg361AlafsTer23	p.R361Afs*23	ENST00000342988	NM_005359.5	361	Cgc/gc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212397	5212397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	41	609	0	ENST00000357368.4:c.4720G>T	p.Val1574Phe	p.V1574F	ENST00000357368	NM_002850.3	1574	Gtc/Ttc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223060	5223060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	55	447	0	ENST00000357368.4:c.2743G>A	p.Glu915Lys	p.E915K	ENST00000357368	NM_002850.3	915	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112155004	112155010	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTCAT	AGCTCAT	-			P-0034138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	59	442	0	ENST00000257430.4:c.1275_1281del	p.Ala426AsnfsTer26	p.A426Nfs*26	ENST00000257430	NM_000038.5	425	gaAGCTCAT/ga																																																																															
CDH1	999	MSKCC	GRCh37	16	68845699	68845700	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	64	702	1	ENST00000261769.5:c.946dup	p.Met316AsnfsTer5	p.M316Nfs*5	ENST00000261769	NM_004360.3	315	-/A																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380254	25380254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	392	726	1	ENST00000256078.4:c.204G>T	p.Arg68Ser	p.R68S	ENST00000256078	NM_033360.2	68	agG/agT																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851558	134851558	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs770155473		P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	162	562	0	ENST00000398015.3:c.964G>A	p.Val322Ile	p.V322I	ENST00000398015	NM_004441.4	322	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747342068		P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	326	1018	0	ENST00000269305.4:c.394A>G	p.Lys132Glu	p.K132E	ENST00000269305	NM_001126112.2	132	Aag/Gag																																																																															
NF1	4763	MSKCC	GRCh37	17	29662034	29662034	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	128	513	0	ENST00000358273.4:c.5991G>A	p.Trp1997Ter	p.W1997*	ENST00000358273	NM_001042492.2	1997	tgG/tgA																																																																															
INSR	3643	MSKCC	GRCh37	19	7122771	7122771	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202160383		P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	79	657	0	ENST00000302850.5:c.3383G>A	p.Arg1128His	p.R1128H	ENST00000302850	NM_000208.2	1128	cGc/cAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37864713	37864713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	94	714	0	ENST00000269571.5:c.365C>T	p.Pro122Leu	p.P122L	ENST00000269571		122	cCg/cTg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729316	41729316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	273	662	0	ENST00000242208.4:c.1213G>A	p.Asp405Asn	p.D405N	ENST00000242208	NM_002192.2	405	Gat/Aat																																																																															
ATRX	546	MSKCC	GRCh37	X	76763927	76763927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	107	767	0	ENST00000373344.5:c.7381C>A	p.Gln2461Lys	p.Q2461K	ENST00000373344	NM_000489.3	2461	Cag/Aag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18800882	18800882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	77	632	1	ENST00000266497.5:c.4258G>T	p.Val1420Leu	p.V1420L	ENST00000266497		1420	Gtg/Ttg																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281840	49281840	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	116	861	0	ENST00000282018.3:c.887C>A	p.Ala296Asp	p.A296D	ENST00000282018	NM_020377.2	296	gCc/gAc																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66519958	66519958	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	320	577	0	ENST00000358598.2:c.440+1G>A		p.X147_splice	ENST00000358598	NM_212471.2	147																																																																																
INHBA	3624	MSKCC	GRCh37	7	41729271	41729271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	94	579	0	ENST00000242208.4:c.1258G>T	p.Val420Leu	p.V420L	ENST00000242208	NM_002192.2	420	Gtg/Ttg																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652216	48652216	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	74	593	0	ENST00000376670.3:c.887C>G	p.Thr296Ser	p.T296S	ENST00000376670	NM_002049.3	296	aCc/aGc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652428	48652428	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	305	906	0	ENST00000376670.3:c.1099C>G	p.Leu367Val	p.L367V	ENST00000376670	NM_002049.3	367	Ctg/Gtg																																																																															
BTK	695	MSKCC	GRCh37	X	100611131	100611131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	122	774	0	ENST00000308731.7:c.1475G>T	p.Arg492Leu	p.R492L	ENST00000308731	NM_000061.2	492	cGc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	161	670	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0034222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	104	879	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
POLE	5426	MSKCC	GRCh37	12	133202741	133202741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	139	559	0	ENST00000320574.5:c.6493C>T	p.Arg2165Cys	p.R2165C	ENST00000320574	NM_006231.2	2165	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	223	788	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	102	831	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55138642	55138642	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143344944		P-0034255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	92	675	1	ENST00000257290.5:c.1319C>T	p.Thr440Met	p.T440M	ENST00000257290	NM_006206.4	440	aCg/aTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	149	820	2	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821601	72821618	+	inframe_deletion	In_Frame_Del	DEL	CCGCCGCCGCCGCCGCCA	CCGCCGCCGCCGCCGCCA	-			P-0034255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	16	96	0	ENST00000268489.5:c.10557_10574delTGGCGGCGGCGGCGGCGG	p.Gly3522_Gly3527del	p.G3522_G3527del	ENST00000268489	NM_006885.3	3519	ggTGGCGGCGGCGGCGGCGGc/ggc																																																																															
CIC	23152	MSKCC	GRCh37	19	42793521	42793521	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	195	934	1	ENST00000575354.2:c.1323G>A	p.Met441Ile	p.M441I	ENST00000575354	NM_015125.3	441	atG/atA																																																																															
CIC	23152	MSKCC	GRCh37	19	42792029	42792029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	126	742	0	ENST00000575354.2:c.833G>T	p.Ser278Ile	p.S278I	ENST00000575354	NM_015125.3	278	aGc/aTc																																																																															
CIC	23152	MSKCC	GRCh37	19	42793120	42793120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	193	890	4	ENST00000575354.2:c.1012G>A	p.Ala338Thr	p.A338T	ENST00000575354	NM_015125.3	338	Gca/Aca																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266057	41266360	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGC	AAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGC	-			P-0034255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	24	367	0	ENST00000349496.5:c.56_242-83del		p.X19_splice	ENST00000349496	NM_001904.3	19																																																																																
TRAF2	7186	MSKCC	GRCh37	9	139814891	139814891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	144	792	0	ENST00000247668.2:c.884G>A	p.Arg295Lys	p.R295K	ENST00000247668	NM_021138.3	295	aGg/aAg																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858176	152858176	+	synonymous_variant	Silent	SNP	G	G	A			P-0034255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	150	546	0	ENST00000406277.2:c.439C>T	p.Leu147=	p.L147=	ENST00000406277	NM_152274.4	147	Ctg/Ttg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	264	554	0	ENST00000347630.2:c.397T>A	p.Phe133Ile	p.F133I	ENST00000347630	NM_001007230.1	133	Ttc/Atc																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39305242	39305242	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	270	537	0	ENST00000373001.3:c.1183C>G	p.Pro395Ala	p.P395A	ENST00000373001	NM_022157.3	395	Cca/Gca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692815	89692815	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	40	309	0	ENST00000371953.3:c.299T>G	p.Leu100Arg	p.L100R	ENST00000371953	NM_000314.4	100	cTt/cGt																																																																															
MGA	23269	MSKCC	GRCh37	15	42041753	42041753	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	22	388	0	ENST00000219905.7:c.5948C>A	p.Ser1983Ter	p.S1983*	ENST00000219905	NM_001164273.1	1983	tCa/tAa																																																																															
MGA	23269	MSKCC	GRCh37	15	42057151	42057179	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCACCCTAAAAGGTCCCCTATTCTCAG	GCTCACCCTAAAAGGTCCCCTATTCTCAG	-			P-0034289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	54	652	0	ENST00000219905.7:c.7813_7841del	p.Leu2605ThrfsTer8	p.L2605Tfs*8	ENST00000219905	NM_001164273.1	2604	ttGCTCACCCTAAAAGGTCCCCTATTCTCAGga/ttga																																																																															
TSC1	7248	MSKCC	GRCh37	9	135800974	135800975	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	TTGAGACA			P-0034289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	100	309	0	ENST00000298552.3:c.355_362dup	p.Lys121AsnfsTer19	p.K121Nfs*19	ENST00000298552	NM_001162426.1	121	aag/aaTGTCTCAAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76891480	76891480	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	355	375	0	ENST00000373344.5:c.4625A>G	p.Asp1542Gly	p.D1542G	ENST00000373344	NM_000489.3	1542	gAt/gGt																																																																															
MGA	23269	MSKCC	GRCh37	15	42059454	42059465	+	frameshift_variant	Frame_Shift_Del	DEL	CTCACCAAGTTC	CTCACCAAGTTC	G			P-0034289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	65	347	0	ENST00000219905.7:c.9174_9185delinsG	p.Ser3059CysfsTer19	p.S3059Cfs*19	ENST00000219905	NM_001164273.1	3058	gcCTCACCAAGTTCt/gcGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	101	452	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0034293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	205	685	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0034293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	10	198	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
ALK	238	MSKCC	GRCh37	2	30143164	30143164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	140	677	0	ENST00000389048.3:c.362G>A	p.Arg121Gln	p.R121Q	ENST00000389048	NM_004304.4	121	cGg/cAg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146788	185146788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	177	576	1	ENST00000265026.3:c.419C>T	p.Pro140Leu	p.P140L	ENST00000265026	NM_004721.4	140	cCt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112151285	112151286	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0034293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	76	299	0	ENST00000257430.4:c.930dup	p.Lys311GlnfsTer16	p.K311Qfs*16	ENST00000257430	NM_000038.5	310	acc/aCcc																																																																															
APC	324	MSKCC	GRCh37	5	112173535	112173547	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGCCATCTCTT	CTTGCCATCTCTT	-			P-0034293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	22	318	0	ENST00000257430.4:c.2245_2257del	p.Leu749MetfsTer8	p.L749Mfs*8	ENST00000257430	NM_000038.5	748	agCTTGCCATCTCTT/ag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176709479	176709479	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	47	333	0	ENST00000439151.2:c.5906A>G	p.Asn1969Ser	p.N1969S	ENST00000439151	NM_022455.4	1969	aAt/aGt																																																																															
PIM1	5292	MSKCC	GRCh37	6	37140810	37140810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	149	477	0	ENST00000373509.5:c.646C>T	p.His216Tyr	p.H216Y	ENST00000373509	NM_002648.3	216	Cat/Tat																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561418	9561418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	185	686	0	ENST00000353224.5:c.364G>A	p.Glu122Lys	p.E122K	ENST00000353224	NM_177990.2	122	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55233127	55233127	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	672	657	0	ENST00000275493.2:c.1877A>G	p.Tyr626Cys	p.Y626C	ENST00000275493	NM_005228.3	626	tAc/tGc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458822	120458822	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	30	827	0	ENST00000256646.2:c.6523A>G	p.Ile2175Val	p.I2175V	ENST00000256646	NM_024408.3	2175	Atc/Gtc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0034352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	281	380	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1222006	1222006	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0034352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	572	545	0	ENST00000326873.7:c.920+1G>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																																
TBX3	6926	MSKCC	GRCh37	12	115114192	115114192	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	247	808	0	ENST00000257566.3:c.1025A>G	p.Glu342Gly	p.E342G	ENST00000257566	NM_016569.3	342	gAa/gGa																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023096	33023097	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0034352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	117	394	1	ENST00000300177.4:c.205_206delinsAA	p.Pro69Asn	p.P69N	ENST00000300177	NM_001191322.1	69	CCc/AAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577017	7577017	+	splice_donor_variant	Splice_Site	DEL	A	A	-			P-0034352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	592	744	2	ENST00000269305.4:c.919+2del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212251788	212251788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	125	359	0	ENST00000342788.4:c.3271G>T	p.Ala1091Ser	p.A1091S	ENST00000342788	NM_005235.2	1091	Gct/Tct																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445055	89445055	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	137	471	0	ENST00000336596.2:c.1375G>T	p.Glu459Ter	p.E459*	ENST00000336596	NM_005233.5	459	Gaa/Taa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285801	87285801	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	221	712	0	ENST00000277120.3:c.138C>A	p.Ser46Arg	p.S46R	ENST00000277120		46	agC/agA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410538	63410538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	268	394	1	ENST00000330258.3:c.2629G>A	p.Gly877Ser	p.G877S	ENST00000330258	NM_152424.3	877	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	147	653	1	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048662	180048662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	64	549	0	ENST00000261937.6:c.1900G>A	p.Ala634Thr	p.A634T	ENST00000261937	NM_182925.4	634	Gcc/Acc																																																																															
ATR	545	MSKCC	GRCh37	3	142268379	142268380	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	37	362	0	ENST00000350721.4:c.3112dup	p.Ser1038PhefsTer11	p.S1038Ffs*11	ENST00000350721	NM_001184.3	1038	tct/tTct																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	52	413	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624263	89624263	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	29	299	0	ENST00000371953.3:c.37A>T	p.Lys13Ter	p.K13*	ENST00000371953	NM_000314.4	13	Aaa/Taa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135776220	135776220	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	37	333	0	ENST00000298552.3:c.2507C>G	p.Ser836Ter	p.S836*	ENST00000298552	NM_001162426.1	836	tCa/tGa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967087	25967087	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	56	507	0	ENST00000435504.4:c.2119G>T	p.Gly707Trp	p.G707W	ENST00000435504		707	Ggg/Tgg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813907	50813907	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	47	456	0	ENST00000398568.2:c.1461G>T	p.Trp487Cys	p.W487C	ENST00000398568	NM_001042412.1	487	tgG/tgT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8492907	8492907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	83	534	2	ENST00000356435.5:c.2422G>A	p.Asp808Asn	p.D808N	ENST00000356435		808	Gat/Aat																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390980	139390980	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	71	706	0	ENST00000277541.6:c.7211A>T	p.Gln2404Leu	p.Q2404L	ENST00000277541	NM_017617.3	2404	cAg/cTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106197245	106197245	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	55	326	0	ENST00000380013.4:c.5582del	p.Gly1861GlufsTer26	p.G1861Efs*26	ENST00000380013	NM_001127208.2	1860	Ggg/gg																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30253850	30253850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	50	456	0	ENST00000307677.4:c.604G>A	p.Glu202Lys	p.E202K	ENST00000307677	NM_138578.1	202	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711876	89711876	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	53	399	0	ENST00000371953.3:c.494G>T	p.Gly165Val	p.G165V	ENST00000371953	NM_000314.4	165	gGa/gTa																																																																															
TET1	80312	MSKCC	GRCh37	10	70412311	70412311	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	24	265	0	ENST00000373644.4:c.4421A>T	p.Lys1474Ile	p.K1474I	ENST00000373644	NM_030625.2	1474	aAa/aTa																																																																															
NUF2	83540	MSKCC	GRCh37	1	163297295	163297295	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	71	435	0	ENST00000271452.3:c.141G>C	p.Met47Ile	p.M47I	ENST00000271452	NM_145697.2	47	atG/atC																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717694	89717694	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	49	396	0	ENST00000371953.3:c.719A>G	p.Tyr240Cys	p.Y240C	ENST00000371953	NM_000314.4	240	tAc/tGc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104375050	104375050	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	34	455	0	ENST00000369902.3:c.1048G>T	p.Asp350Tyr	p.D350Y	ENST00000369902	NM_016169.3	350	Gac/Tac																																																																															
LMO1	4004	MSKCC	GRCh37	11	8248544	8248544	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs201874026		P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	36	507	0	ENST00000335790.3:c.343G>C	p.Ala115Pro	p.A115P	ENST00000335790	NM_002315.2	115	Gcc/Ccc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589554	69589554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	19	145	0	ENST00000168712.1:c.299C>A	p.Pro100His	p.P100H	ENST00000168712	NM_002007.2	100	cCc/cAc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77051785	77051785	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	100	405	0	ENST00000356341.3:c.1022G>A	p.Trp341Ter	p.W341*	ENST00000356341	NM_002576.4	341	tGg/tAg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102206942	102206942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	26	306	0	ENST00000263464.3:c.1570C>A	p.His524Asn	p.H524N	ENST00000263464	NM_001165.4	524	Cat/Aat																																																																															
ATM	472	MSKCC	GRCh37	11	108143554	108143554	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	53	441	0	ENST00000278616.4:c.3259A>T	p.Met1087Leu	p.M1087L	ENST00000278616	NM_000051.3	1087	Atg/Ttg																																																																															
ATM	472	MSKCC	GRCh37	11	108202225	108202225	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	38	420	0	ENST00000278616.4:c.7570G>T	p.Ala2524Ser	p.A2524S	ENST00000278616	NM_000051.3	2524	Gct/Tct																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373407	118373407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	80	442	0	ENST00000534358.1:c.6800C>T	p.Ser2267Leu	p.S2267L	ENST00000534358	NM_005933.3	2267	tCa/tTa																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125499135	125499135	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	68	515	0	ENST00000428830.2:c.298A>T	p.Ile100Leu	p.I100L	ENST00000428830	NM_001114121.2	100	Ata/Tta																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433749	49433749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	78	718	1	ENST00000301067.7:c.7804G>T	p.Gly2602Trp	p.G2602W	ENST00000301067	NM_003482.3	2602	Ggg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447076	49447076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	73	508	0	ENST00000301067.7:c.868G>T	p.Val290Phe	p.V290F	ENST00000301067	NM_003482.3	290	Gtt/Ttt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114169	115114169	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	86	563	0	ENST00000257566.3:c.1048G>T	p.Ala350Ser	p.A350S	ENST00000257566	NM_016569.3	350	Gcc/Tcc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281513	49281513	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	75	625	0	ENST00000282018.3:c.560G>T	p.Cys187Phe	p.C187F	ENST00000282018	NM_020377.2	187	tGc/tTc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524625	103524625	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	34	289	0	ENST00000355739.4:c.2756G>C	p.Arg919Pro	p.R919P	ENST00000355739	NM_000123.3	919	cGg/cCg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435772	110435772	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	23	105	0	ENST00000375856.3:c.2629C>A	p.Pro877Thr	p.P877T	ENST00000375856	NM_003749.2	877	Ccg/Acg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610581	81610581	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	36	331	0	ENST00000298171.2:c.2179G>C	p.Glu727Gln	p.E727Q	ENST00000298171	NM_000369.2	727	Gag/Cag																																																																															
MGA	23269	MSKCC	GRCh37	15	42059011	42059011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	40	405	0	ENST00000219905.7:c.8731G>A	p.Glu2911Lys	p.E2911K	ENST00000219905	NM_001164273.1	2911	Gag/Aag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2122875	2122876	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	63	521	0	ENST00000219476.3:c.2246_2247del	p.Arg749ProfsTer12	p.R749Pfs*12	ENST00000219476	NM_000548.3	749	cGG/c																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857708	9857708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	42	457	0	ENST00000330684.3:c.3693G>T	p.Arg1231Ser	p.R1231S	ENST00000330684	NM_001134407.1	1231	agG/agT																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934560	9934560	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	51	387	0	ENST00000330684.3:c.1595G>T	p.Gly532Val	p.G532V	ENST00000330684	NM_001134407.1	532	gGa/gTa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041798	14041798	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	45	499	0	ENST00000311895.7:c.2345A>G	p.Asn782Ser	p.N782S	ENST00000311895	NM_005236.2	782	aAt/aGt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028665	12028665	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	78	412	0	ENST00000353533.5:c.868G>T	p.Val290Phe	p.V290F	ENST00000353533	NM_003010.3	290	Gtc/Ttc																																																																															
NF1	4763	MSKCC	GRCh37	17	29562698	29562698	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	119	471	0	ENST00000358273.4:c.3778A>T	p.Met1260Leu	p.M1260L	ENST00000358273	NM_001042492.2	1260	Atg/Ttg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30302714	30302714	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	83	445	0	ENST00000322652.5:c.805G>C	p.Glu269Gln	p.E269Q	ENST00000322652	NM_015355.2	269	Gaa/Caa																																																																															
RARA	5914	MSKCC	GRCh37	17	38511673	38511673	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	51	441	0	ENST00000254066.5:c.1171G>T	p.Gly391Trp	p.G391W	ENST00000254066	NM_000964.3	391	Ggg/Tgg																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732917	74732917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	34	176	0	ENST00000359995.5:c.326G>T	p.Arg109Met	p.R109M	ENST00000359995	NM_001195427.1	109	aGg/aTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573553	48573553	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	38	241	0	ENST00000342988.3:c.137A>T	p.Lys46Met	p.K46M	ENST00000342988	NM_005359.5	46	aAg/aTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602463	10602463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	92	561	0	ENST00000171111.5:c.1115G>T	p.Gly372Val	p.G372V	ENST00000171111	NM_203500.1	372	gGg/gTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955048	17955048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	93	635	0	ENST00000458235.1:c.179C>A	p.Ala60Asp	p.A60D	ENST00000458235	NM_000215.3	60	gCc/gAc																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792385	33792385	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	38	570	1	ENST00000498907.2:c.936G>T	p.Gln312His	p.Q312H	ENST00000498907	NM_004364.3	312	caG/caT																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082536	16082536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	55	497	0	ENST00000281043.3:c.350G>T	p.Trp117Leu	p.W117L	ENST00000281043	NM_005378.4	117	tGg/tTg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469622	25469622	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	52	608	0	ENST00000264709.3:c.1146G>C	p.Lys382Asn	p.K382N	ENST00000264709	NM_175629.2	382	aaG/aaC																																																																															
ALK	238	MSKCC	GRCh37	2	29446286	29446286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	80	638	0	ENST00000389048.3:c.3281C>A	p.Pro1094His	p.P1094H	ENST00000389048	NM_004304.4	1094	cCc/cAc																																																																															
ALK	238	MSKCC	GRCh37	2	29473971	29473971	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	36	535	0	ENST00000389048.3:c.2204G>C	p.Ser735Thr	p.S735T	ENST00000389048	NM_004304.4	735	aGc/aCc																																																																															
ALK	238	MSKCC	GRCh37	2	29474077	29474077	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	40	578	0	ENST00000389048.3:c.2098C>T	p.Gln700Ter	p.Q700*	ENST00000389048	NM_004304.4	700	Cag/Tag																																																																															
ALK	238	MSKCC	GRCh37	2	30143423	30143423	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	51	311	0	ENST00000389048.3:c.103G>T	p.Gly35Trp	p.G35W	ENST00000389048	NM_004304.4	35	Ggg/Tgg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99181134	99181134	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	55	516	0	ENST00000074304.5:c.2075A>T	p.Lys692Met	p.K692M	ENST00000074304	NM_001134224.1	692	aAg/aTg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376233	225376233	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	78	446	0	ENST00000264414.4:c.721A>G	p.Ile241Val	p.I241V	ENST00000264414	NM_003590.4	241	Att/Gtt																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794431	242794431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	53	612	0	ENST00000334409.5:c.511G>T	p.Val171Phe	p.V171F	ENST00000334409	NM_005018.2	171	Gtt/Ttt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017842	31017842	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	66	571	1	ENST00000375687.4:c.704G>T	p.Arg235Leu	p.R235L	ENST00000375687	NM_015338.5	235	cGg/cTg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384628	31384628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	72	569	0	ENST00000328111.2:c.1330G>T	p.Val444Leu	p.V444L	ENST00000328111	NM_006892.3	444	Gtg/Ttg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31394054	31394054	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	82	330	0	ENST00000328111.2:c.2341A>G	p.Ile781Val	p.I781V	ENST00000328111	NM_006892.3	781	Atc/Gtc																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961561	54961561	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	30	388	0	ENST00000312783.6:c.71G>T	p.Arg24Leu	p.R24L	ENST00000312783	NM_198436.1	24	cGt/cTt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57478617	57478617	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	55	438	0	ENST00000371085.3:c.289A>T	p.Asn97Tyr	p.N97Y	ENST00000371085	NM_000516.4	97	Aac/Tac																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484255	57484255	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	108	400	0	ENST00000371085.3:c.569A>C	p.Tyr190Ser	p.Y190S	ENST00000371085	NM_000516.4	190	tAt/tCt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147497	47147497	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	86	444	0	ENST00000409792.3:c.4829A>G	p.Lys1610Arg	p.K1610R	ENST00000409792	NM_014159.6	1610	aAg/aGg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52623272	52623272	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	33	238	0	ENST00000394830.3:c.2780-1G>A		p.X927_splice	ENST00000394830	NM_018313.4	927																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52649433	52649433	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	100	600	0	ENST00000394830.3:c.1858G>T	p.Glu620Ter	p.E620*	ENST00000394830	NM_018313.4	620	Gag/Tag																																																																															
KIT	3815	MSKCC	GRCh37	4	55524249	55524249	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	83	396	0	ENST00000288135.5:c.67+1G>T		p.X23_splice	ENST00000288135	NM_000222.2	23																																																																																
TET2	54790	MSKCC	GRCh37	4	106155876	106155876	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	70	435	0	ENST00000380013.4:c.777G>T	p.Glu259Asp	p.E259D	ENST00000380013	NM_001127208.2	259	gaG/gaT																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38953183	38953183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	57	255	1	ENST00000357387.3:c.2801G>T	p.Gly934Val	p.G934V	ENST00000357387	NM_152756.3	934	gGc/gTc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056560	26056560	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	24	225	0	ENST00000343677.2:c.97C>A	p.Arg33Ser	p.R33S	ENST00000343677	NM_005319.3	33	Cgt/Agt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056576	26056576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	51	228	0	ENST00000343677.2:c.81G>T	p.Lys27Asn	p.K27N	ENST00000343677	NM_005319.3	27	aaG/aaT																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197463	26197463	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	55	248	0	ENST00000356476.2:c.16C>A	p.Gln6Lys	p.Q6K	ENST00000356476		6	Cag/Aag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168659	32168659	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	124	501	0	ENST00000375023.3:c.4264G>T	p.Glu1422Ter	p.E1422*	ENST00000375023	NM_004557.3	1422	Gag/Tag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178542	32178542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	91	429	0	ENST00000375023.3:c.2852G>T	p.Gly951Val	p.G951V	ENST00000375023	NM_004557.3	951	gGg/gTg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94128982	94128982	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	36	325	0	ENST00000369303.4:c.78G>T	p.Glu26Asp	p.E26D	ENST00000369303	NM_004440.3	26	gaG/gaT																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38139077	38139077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	108	506	0	ENST00000317025.8:c.3526G>T	p.Gly1176Cys	p.G1176C	ENST00000317025	NM_023034.1	1176	Ggt/Tgt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68984783	68984783	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	62	367	0	ENST00000288368.4:c.1547T>A	p.Leu516Gln	p.L516Q	ENST00000288368	NM_024870.2	516	cTg/cAg																																																																															
NBN	4683	MSKCC	GRCh37	8	90993699	90993699	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	30	293	0	ENST00000265433.3:c.224G>T	p.Gly75Val	p.G75V	ENST00000265433	NM_002485.4	75	gGt/gTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449734	8449734	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	54	452	0	ENST00000356435.5:c.3979C>G	p.Gln1327Glu	p.Q1327E	ENST00000356435		1327	Caa/Gaa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485981	8485981	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	72	494	0	ENST00000356435.5:c.2836G>T	p.Glu946Ter	p.E946*	ENST00000356435		946	Gag/Tag																																																																															
TEK	7010	MSKCC	GRCh37	9	27157971	27157971	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	51	490	0	ENST00000380036.4:c.195G>C	p.Met65Ile	p.M65I	ENST00000380036	NM_000459.3	65	atG/atC																																																																															
PAX5	5079	MSKCC	GRCh37	9	37006527	37006527	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	46	364	0	ENST00000358127.4:c.418C>G	p.Arg140Gly	p.R140G	ENST00000358127	NM_001280556.1	140	Cgg/Ggg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250028	110250028	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	56	534	0	ENST00000374672.4:c.647A>T	p.Gln216Leu	p.Q216L	ENST00000374672	NM_004235.4	216	cAg/cTg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139562798	139562798	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	59	640	0	ENST00000308874.7:c.64C>G	p.His22Asp	p.H22D	ENST00000308874		22	Cac/Gac																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239954	53239954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	88	272	0	ENST00000375401.3:c.1487G>T	p.Gly496Val	p.G496V	ENST00000375401	NM_004187.3	496	gGc/gTc																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50492758	50492760	+	missense_variant	Missense_Mutation	ONP	AAG	AAG	CAT			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	70	500	0	ENST00000394963.4:c.1523_1525delinsCAT	p.Gln508_Ala509delinsProSer	p.Q508_A509delinsPS	ENST00000394963	NM_003076.4	508	cAAGcc/cCATcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	113	356	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	230	658	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	148	489	0	ENST00000324856.7:c.3977dupC	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	161	421	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																															
BRAF	673	MSKCC	GRCh37	7	140494148	140494148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	278	875	0	ENST00000288602.6:c.1100C>T	p.Pro367Leu	p.P367L	ENST00000288602	NM_004333.4	367	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	228	652	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21968242	21968242	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	138	404	0	ENST00000304494.5:c.458-1G>T		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49440489	49440501	+	frameshift_variant	Frame_Shift_Del	DEL	GTGAGGGGTCGGA	GTGAGGGGTCGGA	-			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	251	691	0	ENST00000301067.7:c.4309_4321del	p.Ser1437AlafsTer65	p.S1437Afs*65	ENST00000301067	NM_003482.3	1437	TCCGACCCCTCACgc/gc																																																																															
NF2	4771	MSKCC	GRCh37	22	29999988	29999988	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	74	243	0	ENST00000338641.4:c.1A>G	p.Met1?	p.M1?	ENST00000338641	NM_000268.3	1	Atg/Gtg																																																																															
APC	324	MSKCC	GRCh37	5	112137003	112137003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	80	413	0	ENST00000257430.4:c.758del	p.Gly253AlafsTer40	p.G253Afs*40	ENST00000257430	NM_000038.5	253	Ggc/gc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117714402	117714402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	37	534	0	ENST00000368508.3:c.1247C>T	p.Ala416Val	p.A416V	ENST00000368508	NM_002944.2	416	gCt/gTt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001034	150001034	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	67	482	0	ENST00000253339.5:c.2570A>G	p.His857Arg	p.H857R	ENST00000253339		857	cAc/cGc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450257	50450257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	158	427	0	ENST00000331340.3:c.441C>G	p.Cys147Trp	p.C147W	ENST00000331340	NM_006060.4	147	tgC/tgG																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508424	106508424	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	70	275	0	ENST00000359195.3:c.418C>G	p.Arg140Gly	p.R140G	ENST00000359195	NM_002649.2	140	Cgg/Ggg																																																																															
MET	4233	MSKCC	GRCh37	7	116339818	116339818	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	219	576	0	ENST00000397752.3:c.680T>C	p.Met227Thr	p.M227T	ENST00000397752	NM_000245.2	227	aTg/aCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	88	427	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238758086		P-0034554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	28	577	1	ENST00000358026.2:c.2729C>T	p.Thr910Met	p.T910M	ENST00000358026	NM_001128849.1	910	aCg/aTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954272	32954273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs886038189		P-0034554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	12	350	1	ENST00000380152.3:c.9253dup	p.Thr3085AsnfsTer26	p.T3085Nfs*26	ENST00000380152		3082	-/A																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610409	10610409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	207	610	0	ENST00000171111.5:c.301G>A	p.Ala101Thr	p.A101T	ENST00000171111	NM_203500.1	101	Gcc/Acc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16245932	16245932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	43	315	0	ENST00000375759.3:c.1555G>T	p.Val519Leu	p.V519L	ENST00000375759	NM_015001.2	519	Gtg/Ttg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40481781	40481781	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	90	349	0	ENST00000264657.5:c.1123G>T	p.Val375Phe	p.V375F	ENST00000264657	NM_139276.2	375	Gtt/Ttt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206807	162206807	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	40	265	0	ENST00000366898.1:c.868G>T	p.Val290Leu	p.V290L	ENST00000366898	NM_004562.2	290	Gtg/Ttg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78796929	78796929	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	83	530	0	ENST00000306801.3:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000306801	NM_020761.2	348	Cga/Tga																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175942	176175942	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs964768927		P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	11	64	0	ENST00000367669.3:c.173C>T	p.Ser58Leu	p.S58L	ENST00000367669	NM_022457.5	58	tCg/tTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295220	1295220	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	73	210	0				ENST00000310581	NM_198253.2																																																																																	
GNA11	2767	MSKCC	GRCh37	19	3119022	3119022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	128	600	5	ENST00000078429.4:c.706G>A	p.Asp236Asn	p.D236N	ENST00000078429	NM_002067.2	236	Gac/Aac																																																																															
MPL	4352	MSKCC	GRCh37	1	43814566	43814566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	230	339	0	ENST00000372470.3:c.1361G>A	p.Arg454Gln	p.R454Q	ENST00000372470	NM_005373.2	454	cGa/cAa																																																																															
ATM	472	MSKCC	GRCh37	11	108199939	108199947	+	inframe_deletion	In_Frame_Del	DEL	TAGGGAACA	TAGGGAACA	-			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	115	133	0	ENST00000278616.4:c.7283_7291del	p.Arg2428_His2430del	p.R2428_H2430del	ENST00000278616	NM_000051.3	2427	ctTAGGGAACAt/ctt																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281488	49281488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	98	595	0	ENST00000282018.3:c.535G>A	p.Glu179Lys	p.E179K	ENST00000282018	NM_020377.2	179	Gag/Aag																																																																															
MGA	23269	MSKCC	GRCh37	15	42041037	42041037	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	322	540	0	ENST00000219905.7:c.5415del	p.Asn1805LysfsTer33	p.N1805Kfs*33	ENST00000219905	NM_001164273.1	1805	aaT/aa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857178	9857178	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	62	345	0	ENST00000330684.3:c.4223C>A	p.Thr1408Lys	p.T1408K	ENST00000330684	NM_001134407.1	1408	aCg/aAg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271919	15271919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	113	527	0	ENST00000263388.2:c.6520C>T	p.Arg2174Trp	p.R2174W	ENST00000263388	NM_000435.2	2174	Cgg/Tgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539216	187539216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	89	419	0	ENST00000441802.2:c.8524G>T	p.Gly2842Cys	p.G2842C	ENST00000441802	NM_005245.3	2842	Ggc/Tgc																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197318	26197318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	48	323	0	ENST00000356476.2:c.161G>A	p.Arg54His	p.R54H	ENST00000356476		54	cGc/cAc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979257	93979257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	70	307	0	ENST00000369303.4:c.1571G>T	p.Gly524Val	p.G524V	ENST00000369303	NM_004440.3	524	gGa/gTa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120828	94120828	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	117	519	0	ENST00000369303.4:c.223C>T	p.Gln75Ter	p.Q75*	ENST00000369303	NM_004440.3	75	Caa/Taa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39911407	39911407	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	138	424	0	ENST00000378444.4:c.5223del	p.Glu1742SerfsTer26	p.E1742Sfs*26	ENST00000378444	NM_001123385.1	1741	gtA/gt																																																																															
ATRX	546	MSKCC	GRCh37	X	76937702	76937702	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	163	475	0	ENST00000373344.5:c.3046A>T	p.Thr1016Ser	p.T1016S	ENST00000373344	NM_000489.3	1016	Act/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	121	404	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243777010	243777010	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200428825		P-0034580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	40	373	0	ENST00000263826.5:c.659G>A	p.Arg220His	p.R220H	ENST00000263826	NM_005465.4	220	cGt/cAt																																																																															
UPF1	5976	MSKCC	GRCh37	19	18964135	18964135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	44	438	0	ENST00000262803.5:c.1132G>T	p.Gly378Cys	p.G378C	ENST00000262803	NM_002911.3	378	Ggc/Tgc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24129414	24129414	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	47	347	0	ENST00000263121.7:c.58G>C	p.Glu20Gln	p.E20Q	ENST00000263121	NM_003073.3	20	Gag/Cag																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317476	1317476	+	downstream_gene_variant	3'Flank	SNP	C	C	G			P-0034580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	66	643	0				ENST00000381566																																																																																		
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0034604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	59	472	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
CRKL	1399	MSKCC	GRCh37	22	21272398	21272398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	138	839	1	ENST00000354336.3:c.176C>T	p.Ser59Phe	p.S59F	ENST00000354336	NM_005207.3	59	tCc/tTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199562	16199562	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	109	589	0	ENST00000375759.3:c.335G>T	p.Gly112Val	p.G112V	ENST00000375759	NM_015001.2	112	gGa/gTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242445	55242445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	68	474	0	ENST00000275493.2:c.2215A>C	p.Lys739Gln	p.K739Q	ENST00000275493	NM_005228.3	739	Aaa/Caa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859597	151859597	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	128	649	0	ENST00000262189.6:c.11065T>C	p.Phe3689Leu	p.F3689L	ENST00000262189	NM_170606.2	3689	Ttc/Ctc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0034643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	94	422	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589663	67589663	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0034643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	54	188	0	ENST00000274335.5:c.1425+1G>T		p.X475_splice	ENST00000274335		475																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56180645	56180645	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	108	333	0	ENST00000399503.3:c.3974G>C	p.Trp1325Ser	p.W1325S	ENST00000399503	NM_005921.1	1325	tGg/tCg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044973	47044995	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTTCCCCAGCAAAGAGGCGCT	CAGTTCCCCAGCAAAGAGGCGCT	-			P-0034643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	208	396	0	ENST00000329236.7:c.2067_2089del	p.Gln689HisfsTer15	p.Q689Hfs*15	ENST00000329236	NM_001204466.1	689	CAGTTCCCCAGCAAAGAGGCGCTc/c																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	28	598	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123247516	123247516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	54	578	0	ENST00000358487.5:c.1975A>G	p.Lys659Glu	p.K659E	ENST00000358487	NM_000141.4	659	Aag/Gag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109993	115109993	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	61	765	1	ENST00000257566.3:c.1885del	p.Leu629SerfsTer3	p.L629Sfs*3	ENST00000257566	NM_016569.3	629	Ctc/tc																																																																															
CDH1	999	MSKCC	GRCh37	16	68772253	68772263	+	frameshift_variant	Frame_Shift_Del	DEL	CGAGAGCTACA	CGAGAGCTACA	-			P-0034647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	105	833	0	ENST00000261769.5:c.104_114del	p.Glu35ValfsTer20	p.E35Vfs*20	ENST00000261769	NM_004360.3	34	gcCGAGAGCTACAcg/gccg																																																																															
CALR	811	MSKCC	GRCh37	19	13051217	13051217	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	49	329	0	ENST00000316448.5:c.653A>T	p.Asp218Val	p.D218V	ENST00000316448	NM_004343.3	218	gAc/gTc																																																																															
MYD88	4615	MSKCC	GRCh37	3	38181432	38181432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	52	429	0	ENST00000396334.3:c.445A>C	p.Ser149Arg	p.S149R	ENST00000396334	NM_002468.4	149	Agc/Cgc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508683	106508683	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1490061702		P-0034647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	65	449	0	ENST00000359195.3:c.677G>A	p.Arg226His	p.R226H	ENST00000359195	NM_002649.2	226	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	209	578	0	ENST00000269305.4:c.578A>C	p.His193Pro	p.H193P	ENST00000269305	NM_001126112.2	193	cAt/cCt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300837	137300837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	210	688	2	ENST00000481739.1:c.482G>A	p.Arg161Gln	p.R161Q	ENST00000481739	NM_002957.4	161	cGg/cAg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138474614	138474614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	172	504	0	ENST00000289153.2:c.379G>A	p.Gly127Arg	p.G127R	ENST00000289153	NM_006219.2	127	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	85	996	1	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468490	89468490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	54	339	0	ENST00000336596.2:c.2024G>T	p.Gly675Val	p.G675V	ENST00000336596	NM_005233.5	675	gGa/gTa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141502	11141502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	74	818	0	ENST00000344626.4:c.3479G>T	p.Gly1160Val	p.G1160V	ENST00000344626	NM_003072.3	1160	gGg/gTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174485	11174485	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	72	754	0	ENST00000361445.4:c.7190G>T	p.Arg2397Ile	p.R2397I	ENST00000361445	NM_004958.3	2397	aGa/aTa																																																																															
WT1	7490	MSKCC	GRCh37	11	32439188	32439188	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	37	638	1	ENST00000332351.3:c.885C>A	p.Tyr295Ter	p.Y295*	ENST00000332351	NM_024426.4	295	taC/taA																																																																															
POLE	5426	MSKCC	GRCh37	12	133233826	133233826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	65	846	1	ENST00000320574.5:c.3478C>T	p.Arg1160Cys	p.R1160C	ENST00000320574	NM_006231.2	1160	Cgt/Tgt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557822	21557822	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	84	977	1	ENST00000382592.4:c.2023G>T	p.Gly675Trp	p.G675W	ENST00000382592	NM_014572.2	675	Ggg/Tgg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046467	30046467	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	69	765	0	ENST00000331968.5:c.2716G>T	p.Gly906Cys	p.G906C	ENST00000331968	NM_002742.2	906	Ggt/Tgt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81606049	81606049	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	64	569	0	ENST00000298171.2:c.719C>A	p.Ala240Asp	p.A240D	ENST00000298171	NM_000369.2	240	gCc/gAc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95593048	95593048	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	48	578	0	ENST00000343455.3:c.772G>T	p.Gly258Ter	p.G258*	ENST00000343455	NM_177438.2	258	Gga/Tga																																																																															
AKT1	207	MSKCC	GRCh37	14	105243056	105243056	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	68	988	0	ENST00000349310.3:c.227G>C	p.Arg76Pro	p.R76P	ENST00000349310	NM_001014432.1	76	cGc/cCc																																																																															
MGA	23269	MSKCC	GRCh37	15	42003170	42003170	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	46	840	1	ENST00000219905.7:c.2707A>T	p.Arg903Ter	p.R903*	ENST00000219905	NM_001164273.1	903	Aga/Tga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097200	11097200	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	67	809	0	ENST00000344626.4:c.691G>T	p.Gly231Cys	p.G231C	ENST00000344626	NM_003072.3	231	Ggc/Tgc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17952331	17952331	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	96	949	1	ENST00000458235.1:c.1009G>T	p.Glu337Ter	p.E337*	ENST00000458235	NM_000215.3	337	Gag/Tag																																																																															
ALK	238	MSKCC	GRCh37	2	29940470	29940470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	31	502	0	ENST00000389048.3:c.761C>T	p.Pro254Leu	p.P254L	ENST00000389048	NM_004304.4	254	cCt/cTt																																																																															
AURKA	6790	MSKCC	GRCh37	20	54948551	54948551	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	165	547	0	ENST00000312783.6:c.767A>T	p.Asp256Val	p.D256V	ENST00000312783	NM_198436.1	256	gAc/gTc																																																																															
KIT	3815	MSKCC	GRCh37	4	55575613	55575613	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	42	520	0	ENST00000288135.5:c.1139C>G	p.Thr380Arg	p.T380R	ENST00000288135	NM_000222.2	380	aCg/aGg																																																																															
KDR	3791	MSKCC	GRCh37	4	55984875	55984875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	66	728	0	ENST00000263923.4:c.254G>A	p.Cys85Tyr	p.C85Y	ENST00000263923	NM_002253.2	85	tGt/tAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66218805	66218805	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	39	387	0	ENST00000273854.3:c.2253C>G	p.Ile751Met	p.I751M	ENST00000273854	NM_004439.5	751	atC/atG																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230803	66230803	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	30	563	0	ENST00000273854.3:c.2168G>C	p.Gly723Ala	p.G723A	ENST00000273854	NM_004439.5	723	gGt/gCt																																																																															
SDHA	6389	MSKCC	GRCh37	5	228396	228396	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	48	714	0	ENST00000264932.6:c.718G>T	p.Glu240Ter	p.E240*	ENST00000264932	NM_004168.2	240	Gag/Tag																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524615	176524615	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	64	1150	0	ENST00000292408.4:c.2347A>T	p.Ser783Cys	p.S783C	ENST00000292408	NM_213647.1	783	Agc/Tgc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176618991	176618991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	56	687	2	ENST00000439151.2:c.1034C>A	p.Pro345Gln	p.P345Q	ENST00000439151	NM_022455.4	345	cCg/cAg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453074	140453074	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	27	371	1	ENST00000288602.6:c.1860+1G>A		p.X620_splice	ENST00000288602	NM_004333.4	620																																																																																
PRDM14	63978	MSKCC	GRCh37	8	70981575	70981575	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	61	1247	0	ENST00000276594.2:c.521C>A	p.Pro174His	p.P174H	ENST00000276594	NM_024504.3	174	cCc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974820	21974820	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	37	78	0	ENST00000304494.5:c.7C>A	p.Pro3Thr	p.P3T	ENST00000304494	NM_000077.4	3	Ccg/Acg																																																																															
MED12	9968	MSKCC	GRCh37	X	70357446	70357446	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	93	542	1	ENST00000374080.3:c.5787G>T	p.Gln1929His	p.Q1929H	ENST00000374080		1929	caG/caT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	143	535	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0034817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	76	484	0	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178928100	178928100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	76	539	0	ENST00000263967.3:c.1378G>A	p.Gly460Ser	p.G460S	ENST00000263967	NM_006218.2	460	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0032542-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			494	40	972	0	ENST00000269305.4:c.919+1G>C		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9943749	9943749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	299	673	0	ENST00000330684.3:c.1192G>A	p.Asp398Asn	p.D398N	ENST00000330684	NM_001134407.1	398	Gac/Aac																																																																															
ATM	472	MSKCC	GRCh37	11	108196170	108196170	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	294	596	0	ENST00000278616.4:c.6706G>T	p.Glu2236Ter	p.E2236*	ENST00000278616	NM_000051.3	2236	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	373	468	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0034411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	372	608	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0034411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	134	255	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094360	27094360	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	42	468	0	ENST00000324856.7:c.3068G>A	p.Trp1023Ter	p.W1023*	ENST00000324856	NM_006015.4	1023	tGg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	50	232	0	ENST00000257430.4:c.4063del	p.Ser1355LeufsTer60	p.S1355Lfs*60	ENST00000257430	NM_000038.5	1354	Ttt/tt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460389	149460389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	112	487	0	ENST00000286301.3:c.248G>A	p.Arg83His	p.R83H	ENST00000286301	NM_005211.3	83	cGc/cAc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18971135	18971135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	63	515	0	ENST00000262803.5:c.2188C>T	p.Arg730Cys	p.R730C	ENST00000262803	NM_002911.3	730	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576913	7576914	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	68	527	0	ENST00000269305.4:c.932dupA	p.Asn311LysfsTer26	p.N311Kfs*26	ENST00000269305	NM_001126112.2	311	aac/aaAc																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64288422	64288423	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATCC			P-0034411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	43	319	0	ENST00000370651.3:c.189_192dup	p.Val65ProfsTer4	p.V65Pfs*4	ENST00000370651	NM_003463.4	62	-/ATCC																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0034413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	258	404	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0034413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	90	423	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844187	156844187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	192	618	3	ENST00000524377.1:c.1190C>T	p.Pro397Leu	p.P397L	ENST00000524377	NM_002529.3	397	cCg/cTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922301	178922301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	84	314	0	ENST00000263967.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000263967	NM_006218.2	357	cGa/cAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604754	48604754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	144	363	0	ENST00000342988.3:c.1576G>A	p.Glu526Lys	p.E526K	ENST00000342988	NM_005359.5	526	Gaa/Aaa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643942	52643943	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	138	427	0	ENST00000394830.3:c.1953dup	p.Ser652IlefsTer13	p.S652Ifs*13	ENST00000394830	NM_018313.4	651	-/A																																																																															
APC	324	MSKCC	GRCh37	5	112175452	112175452	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0034413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	280	325	0	ENST00000257430.4:c.4161T>A	p.Cys1387Ter	p.C1387*	ENST00000257430	NM_000038.5	1387	tgT/tgA																																																																															
ELF3	1999	MSKCC	GRCh37	1	201980307	201980307	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	196	610	0	ENST00000359651.3:c.43T>G	p.Phe15Val	p.F15V	ENST00000359651		15	Ttc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578379	7578380	+	missense_variant	Missense_Mutation	DNP	TC	TC	CA			P-0034413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	141	504	0	ENST00000269305.4:c.550_551delinsTG	p.Asp184Cys	p.D184C	ENST00000269305	NM_001126112.2	184	GAt/TGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578386	7578401	+	frameshift_variant	Frame_Shift_Del	DEL	AGCGCTCATGGTGGGG	AGCGCTCATGGTGGGG	-			P-0034413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	149	509	1	ENST00000269305.4:c.529_544del	p.Pro177AlafsTer65	p.P177Afs*65	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTgc/gc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274034	10274034	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	249	667	0	ENST00000330684.3:c.235C>T	p.Pro79Ser	p.P79S	ENST00000330684	NM_001134407.1	79	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0034419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	290	669	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	271	677	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0034472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	164	328	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913233		P-0034472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	475	836	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519961		P-0034472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	222	498	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061317	38061317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	452	787	0	ENST00000250448.2:c.672C>A	p.Phe224Leu	p.F224L	ENST00000250448	NM_004496.3	224	ttC/ttA																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026193	71026193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0034472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	230	473	0	ENST00000318789.4:c.1429G>C	p.Ala477Pro	p.A477P	ENST00000318789	NM_032682.5	477	Gcc/Ccc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0034279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	24	322	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0034279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	34	366	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30128053	30128053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	33	698	0	ENST00000263025.4:c.1076G>A	p.Arg359Gln	p.R359Q	ENST00000263025	NM_002746.2	359	cGg/cAg																																																																															
ALK	238	MSKCC	GRCh37	2	29416189	29416189	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	26	535	0	ENST00000389048.3:c.4764A>C	p.Gln1588His	p.Q1588H	ENST00000389048	NM_004304.4	1588	caA/caC																																																																															
XPO1	7514	MSKCC	GRCh37	2	61715744	61715744	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	26	328	0	ENST00000401558.2:c.2185T>G	p.Ser729Ala	p.S729A	ENST00000401558	NM_003400.3	729	Tct/Gct																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168727	56168727	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	35	395	0	ENST00000399503.3:c.1583del	p.Leu528TrpfsTer29	p.L528Wfs*29	ENST00000399503	NM_005921.1	527	ccT/cc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635121	87635121	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0034279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	19	321	0	ENST00000277120.3:c.2173G>C	p.Val725Leu	p.V725L	ENST00000277120		725	Gtc/Ctc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0034380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	47	438	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	104	633	0	ENST00000269305.4:c.820G>C	p.Val274Leu	p.V274L	ENST00000269305	NM_001126112.2	274	Gtt/Ctt																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	30	312	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0034380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	41	378	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513309	44513309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	78	540	3	ENST00000291552.4:c.626G>A	p.Arg209His	p.R209H	ENST00000291552	NM_006758.2	209	cGt/cAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42003452	42003452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	19	473	0	ENST00000219905.7:c.2989G>A	p.Asp997Asn	p.D997N	ENST00000219905	NM_001164273.1	997	Gac/Aac																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0034390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	143	527	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0034390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	99	427	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
CTCF	10664	MSKCC	GRCh37	16	67654615	67654615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	136	485	0	ENST00000264010.4:c.1102C>T	p.Arg368Cys	p.R368C	ENST00000264010	NM_006565.3	368	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	250	537	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372320	55372320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	164	579	0	ENST00000297316.4:c.1010C>T	p.Pro337Leu	p.P337L	ENST00000297316	NM_022454.3	337	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0034257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	54	254	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175749	112175756	+	frameshift_variant	Frame_Shift_Del	DEL	TACTTTAT	TACTTTAT	-			P-0034257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	107	234	0	ENST00000257430.4:c.4461_4468delTTTATTAC	p.Leu1488PhefsTer23	p.L1488Ffs*23	ENST00000257430	NM_000038.5	1486	gaTACTTTATta/gata																																																																															
ARAF	369	MSKCC	GRCh37	X	47426725	47426725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	263	323	0	ENST00000377045.4:c.970G>A	p.Val324Met	p.V324M	ENST00000377045	NM_001654.4	324	Gtg/Atg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138198390	138198390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	73	282	0	ENST00000237289.4:c.983C>G	p.Ala328Gly	p.A328G	ENST00000237289	NM_001270507.1	328	gCa/gGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0034260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	159	474	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39613837	39613837	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	58	428	0	ENST00000262039.4:c.1755G>T	p.Leu585Phe	p.L585F	ENST00000262039	NM_002647.2	585	ttG/ttT																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900767	3900767	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	64	480	0	ENST00000262367.5:c.329C>G	p.Ala110Gly	p.A110G	ENST00000262367	NM_004380.2	110	gCt/gGt																																																																															
CBFB	865	MSKCC	GRCh37	16	67070644	67070644	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0034260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	61	160	0	ENST00000412916.2:c.268A>T	p.Arg90Ter	p.R90*	ENST00000412916		90	Aga/Tga																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66519897	66519897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	32	371	0	ENST00000358598.2:c.380C>T	p.Ala127Val	p.A127V	ENST00000358598	NM_212471.2	127	gCt/gTt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9547023	9547023	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	34	182	0	ENST00000353224.5:c.999C>A	p.Tyr333Ter	p.Y333*	ENST00000353224	NM_177990.2	333	taC/taA																																																																															
ATRX	546	MSKCC	GRCh37	X	76938718	76938718	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	93	620	0	ENST00000373344.5:c.2030C>A	p.Ser677Ter	p.S677*	ENST00000373344	NM_000489.3	677	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0034261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	248	776	4	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	194	550	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	173	453	0	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs17849781		P-0034280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	150	568	0	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015151	37015151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	106	538	0	ENST00000358127.4:c.253G>A	p.Gly85Arg	p.G85R	ENST00000358127	NM_001280556.1	85	Gga/Aga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117383	115117383	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	71	375	0	ENST00000257566.3:c.791del	p.Pro264LeufsTer18	p.P264Lfs*18	ENST00000257566	NM_016569.3	264	cCt/ct																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291560	15291560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	110	585	0	ENST00000263388.2:c.3074C>T	p.Pro1025Leu	p.P1025L	ENST00000263388	NM_000435.2	1025	cCc/cTc																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872433	35872433	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	123	538	0	ENST00000216797.5:c.470T>A	p.Leu157Gln	p.L157Q	ENST00000216797	NM_020529.2	157	cTg/cAg																																																																															
CDH1	999	MSKCC	GRCh37	16	68842371	68842374	+	frameshift_variant	Frame_Shift_Del	DEL	CTCC	CTCC	-			P-0034280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	123	499	0	ENST00000261769.5:c.432_435del	p.Ser145LeufsTer69	p.S145Lfs*69	ENST00000261769	NM_004360.3	144	aaCTCC/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	284	783	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0034240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	144	355	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	91	218	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220147	5220147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	195	677	0	ENST00000357368.4:c.3568C>T	p.Arg1190Trp	p.R1190W	ENST00000357368	NM_002850.3	1190	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101923	11101923	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060502063		P-0034240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	173	795	1	ENST00000344626.4:c.1343G>A	p.Arg448His	p.R448H	ENST00000344626	NM_003072.3	448	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220965	36220965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	91	506	0	ENST00000222270.7:c.5015G>A	p.Cys1672Tyr	p.C1672Y	ENST00000222270	NM_014727.1	1672	tGc/tAc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198273152	198273152	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	361	772	0	ENST00000335508.6:c.1058T>A	p.Leu353Gln	p.L353Q	ENST00000335508	NM_012433.2	353	cTg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245375	153245375	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	347	677	0	ENST00000281708.4:c.1816T>A	p.Trp606Arg	p.W606R	ENST00000281708	NM_033632.3	606	Tgg/Agg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164769	36164769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	39	859	0	ENST00000300305.3:c.1106C>T	p.Ser369Leu	p.S369L	ENST00000300305		369	tCg/tTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123891	46123891	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0034141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	121	272	0	ENST00000334344.6:c.157A>T	p.Arg53Ter	p.R53*	ENST00000334344	NM_152641.2	53	Aga/Tga																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42839735	42839735	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	59	422	0	ENST00000398585.3:c.1504T>C	p.Cys502Arg	p.C502R	ENST00000398585	NM_001135099.1	502	Tgt/Cgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	48	556	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221998	1221998	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	63	711	0	ENST00000326873.7:c.913C>T	p.Gln305Ter	p.Q305*	ENST00000326873	NM_000455.4	305	Cag/Tag																																																																															
RAD50	10111	MSKCC	GRCh37	5	131977959	131977959	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	63	530	0	ENST00000265335.6:c.3842A>T	p.Glu1281Val	p.E1281V	ENST00000265335		1281	gAa/gTa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39249806	39249806	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	57	681	0	ENST00000402219.2:c.1763T>A	p.Phe588Tyr	p.F588Y	ENST00000402219	NM_005633.3	588	tTt/tAt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981748	70981748	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	89	967	1	ENST00000276594.2:c.348C>G	p.Ser116Arg	p.S116R	ENST00000276594	NM_024504.3	116	agC/agG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0034217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	298	378	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KDR	3791	MSKCC	GRCh37	4	55968633	55968633	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200338299		P-0034217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	256	702	1	ENST00000263923.4:c.2030C>T	p.Thr677Met	p.T677M	ENST00000263923	NM_002253.2	677	aCg/aTg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625330	69625331	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTACCACA			P-0034217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	227	808	0	ENST00000334134.2:c.455_462dup	p.Val155CysfsTer6	p.V155Cfs*6	ENST00000334134	NM_005247.2	154	-/TGTGGTAC																																																																															
POLE	5426	MSKCC	GRCh37	12	133220099	133220100	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0034217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	289	754	14	ENST00000320574.5:c.4337_4338delTG	p.Val1446GlyfsTer3	p.V1446Gfs*3	ENST00000320574	NM_006231.2	1446	gTG/g																																																																															
RB1	5925	MSKCC	GRCh37	13	48881435	48881435	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	18	254	0	ENST00000267163.4:c.157G>T	p.Glu53Ter	p.E53*	ENST00000267163	NM_000321.2	53	Gaa/Taa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463546	25463546	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	237	553	1	ENST00000264709.3:c.2136C>A	p.Asp712Glu	p.D712E	ENST00000264709	NM_175629.2	712	gaC/gaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0034221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	515	608	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
TCF3	6929	MSKCC	GRCh37	19	1625601	1625601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	596	787	2	ENST00000344749.5:c.473G>A	p.Arg158Gln	p.R158Q	ENST00000344749	NM_001136139.2	158	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0034225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	273	730	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579442	7579442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	8	652	0	ENST00000269305.4:c.245C>T	p.Pro82Leu	p.P82L	ENST00000269305	NM_001126112.2	82	cCg/cTg																																																																															
TEK	7010	MSKCC	GRCh37	9	27228259	27228259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	99	549	0	ENST00000380036.4:c.3256G>T	p.Ala1086Ser	p.A1086S	ENST00000380036	NM_000459.3	1086	Gcc/Tcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0034032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	24	313	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	75	345	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168771	56168771	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	110	370	0	ENST00000399503.3:c.1625del	p.Thr542IlefsTer15	p.T542Ifs*15	ENST00000399503	NM_005921.1	542	aCt/at																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56174843	56174862	+	frameshift_variant	Frame_Shift_Del	DEL	CACAGTTTAGCGGAAAGAAT	CACAGTTTAGCGGAAAGAAT	-			P-0034032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	57	332	0	ENST00000399503.3:c.2004_2023del	p.His668GlnfsTer22	p.H668Qfs*22	ENST00000399503	NM_005921.1	668	CACAGTTTAGCGGAAAGAATc/c																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	62	279	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0034142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	49	459	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68856020	68856020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	59	477	0	ENST00000261769.5:c.1828C>T	p.Gln610Ter	p.Q610*	ENST00000261769	NM_004360.3	610	Cag/Tag																																																																															
INSR	3643	MSKCC	GRCh37	19	7184588	7184588	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	42	370	0	ENST00000302850.5:c.713A>G	p.Glu238Gly	p.E238G	ENST00000302850	NM_000208.2	238	gAg/gGg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610154	10610154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	95	612	1	ENST00000171111.5:c.556G>A	p.Gly186Ser	p.G186S	ENST00000171111	NM_203500.1	186	Ggc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242474	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGA	GAATTAAGA	-			P-0033851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	212	325	0	ENST00000275493.2:c.2239_2247delTTAAGAGAA	p.Leu747_Glu749del	p.L747_E749del	ENST00000275493	NM_005228.3	746	GAATTAAGA/-																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041719	14041719	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201501958		P-0033851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	53	438	0	ENST00000311895.7:c.2266G>A	p.Val756Met	p.V756M	ENST00000311895	NM_005236.2	756	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577129	7577143	+	inframe_deletion	In_Frame_Del	DEL	AAGCTGTTCCGTCCC	AAGCTGTTCCGTCCC	-			P-0033851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	431	570	0	ENST00000269305.4:c.795_809del	p.Gly266_Phe270del	p.G266_F270del	ENST00000269305	NM_001126112.2	265	ctGGGACGGAACAGCTTt/ctt																																																																															
HGF	3082	MSKCC	GRCh37	7	81335684	81335684	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	58	428	0	ENST00000222390.5:c.1676A>C	p.Glu559Ala	p.E559A	ENST00000222390	NM_000601.4	559	gAg/gCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	36	456	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0033886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	28	635	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748278	41748278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	27	669	2	ENST00000226382.2:c.491C>T	p.Ala164Val	p.A164V	ENST00000226382	NM_003924.3	164	gCg/gTg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52705255	52705255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	26	422	0	ENST00000322088.6:c.137G>A	p.Arg46Lys	p.R46K	ENST00000322088	NM_014225.5	46	aGg/aAg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17951127	17951127	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	38	572	0	ENST00000458235.1:c.1166T>A	p.Leu389His	p.L389H	ENST00000458235	NM_000215.3	389	cTc/cAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396452	396452	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	56	797	2	ENST00000262320.3:c.574A>G	p.Thr192Ala	p.T192A	ENST00000262320	NM_003502.3	192	Act/Gct																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846342	156846342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	37	650	1	ENST00000524377.1:c.1783G>T	p.Gly595Trp	p.G595W	ENST00000524377	NM_002529.3	595	Ggg/Tgg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28624257	28624257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	32	623	1	ENST00000241453.7:c.717G>T	p.Arg239Ser	p.R239S	ENST00000241453	NM_004119.2	239	agG/agT																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396364	396364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	43	729	0	ENST00000262320.3:c.662G>A	p.Cys221Tyr	p.C221Y	ENST00000262320	NM_003502.3	221	tGt/tAt																																																																															
RARA	5914	MSKCC	GRCh37	17	38504699	38504699	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	30	586	0	ENST00000254066.5:c.310G>T	p.Ala104Ser	p.A104S	ENST00000254066	NM_000964.3	104	Gcc/Tcc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245921	41245921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	23	787	0	ENST00000357654.3:c.1627G>T	p.Gly543Cys	p.G543C	ENST00000357654	NM_007294.3	543	Ggt/Tgt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78935211	78935211	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	33	552	0	ENST00000306801.3:c.3623G>T	p.Arg1208Leu	p.R1208L	ENST00000306801	NM_020761.2	1208	cGg/cTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50916762	50916762	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	30	453	0	ENST00000440232.2:c.2234A>G	p.Tyr745Cys	p.Y745C	ENST00000440232	NM_002691.3	745	tAc/tGc																																																																															
ALK	238	MSKCC	GRCh37	2	29455208	29455208	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	23	579	0	ENST00000389048.3:c.2594C>A	p.Ser865Tyr	p.S865Y	ENST00000389048	NM_004304.4	865	tCc/tAc																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99812455	99812455	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	15	428	0	ENST00000280892.6:c.214A>G	p.Lys72Glu	p.K72E	ENST00000280892	NM_001130678.1	72	Aaa/Gaa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117687362	117687362	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	20	443	0	ENST00000368508.3:c.2689T>C	p.Trp897Arg	p.W897R	ENST00000368508	NM_002944.2	897	Tgg/Cgg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683631	162683631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	26	469	0	ENST00000366898.1:c.338C>T	p.Pro113Leu	p.P113L	ENST00000366898	NM_004562.2	113	cCa/cTa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0033889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	20	291	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097859	8097859	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0033889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	17	292	0	ENST00000346208.3:c.241G>T	p.Gly81Trp	p.G81W	ENST00000346208		81	Ggg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0033892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	339	706	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430953	181430953	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	417	652	1	ENST00000325404.1:c.805G>T	p.Asp269Tyr	p.D269Y	ENST00000325404	NM_003106.3	269	Gac/Tac																																																																															
NF1	4763	MSKCC	GRCh37	17	29554613	29554613	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	42	247	0	ENST00000358273.4:c.2398G>T	p.Glu800Ter	p.E800*	ENST00000358273	NM_001042492.2	800	Gaa/Taa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974816	15974816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	49	473	0	ENST00000268712.3:c.4059G>C	p.Glu1353Asp	p.E1353D	ENST00000268712	NM_006311.3	1353	gaG/gaC																																																																															
NF1	4763	MSKCC	GRCh37	17	29684328	29684328	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	226	573	0	ENST00000358273.4:c.7912del	p.Ile2638PhefsTer6	p.I2638Ffs*6	ENST00000358273	NM_001042492.2	2637	cgA/cg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299114	15299114	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	292	662	0	ENST00000263388.2:c.1424G>C	p.Ser475Thr	p.S475T	ENST00000263388	NM_000435.2	475	aGt/aCt																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873183	136873183	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	67	376	0	ENST00000241393.3:c.315del	p.Asn106ThrfsTer62	p.N106Tfs*62	ENST00000241393	NM_003467.2	105	ggG/gg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728665	190728665	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	59	394	0	ENST00000441310.2:c.2053C>G	p.Gln685Glu	p.Q685E	ENST00000441310	NM_000534.4	685	Caa/Gaa																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22153387	22153387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	34	412	0	ENST00000215832.6:c.523G>T	p.Asp175Tyr	p.D175Y	ENST00000215832	NM_002745.4	175	Gat/Tat																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524316	176524316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	1413	691	0	ENST00000292408.4:c.2177G>T	p.Trp726Leu	p.W726L	ENST00000292408	NM_213647.1	726	tGg/tTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2958189	2958189	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	104	531	0	ENST00000396946.4:c.2543G>A	p.Arg848His	p.R848H	ENST00000396946	NM_032415.4	848	cGc/cAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410941	63410941	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	132	628	0	ENST00000330258.3:c.2226G>T	p.Arg742Ser	p.R742S	ENST00000330258	NM_152424.3	742	agG/agT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	602	421	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0033894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	399	693	1	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134977852	134977852	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0033894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	278	298	0	ENST00000398015.3:c.2847-2A>G		p.X949_splice	ENST00000398015	NM_004441.4	949																																																																																
TP53	7157	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	180	488	0	ENST00000269305.4:c.587G>T	p.Arg196Leu	p.R196L	ENST00000269305	NM_001126112.2	196	cGa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576898	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0033894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	194	603	0	ENST00000269305.4:c.948_949del	p.Gln317AlafsTer19	p.Q317Afs*19	ENST00000269305	NM_001126112.2	316	ccCCag/ccag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115252323	115252323	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	213	369	0	ENST00000369535.4:c.317C>A	p.Ser106Ter	p.S106*	ENST00000369535	NM_002524.4	106	tCg/tAg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115263308	115263309	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0033894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	157	544	1	ENST00000438362.2:c.2041_2042delinsTT	p.Gly681Phe	p.G681F	ENST00000438362	NM_001242891.1	681	GGc/TTc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115280667	115280667	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	155	521	0	ENST00000438362.2:c.364G>T	p.Asp122Tyr	p.D122Y	ENST00000438362	NM_001242891.1	122	Gac/Tac																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741944	17741944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	49	193	0	ENST00000250003.3:c.615C>A	p.Asn205Lys	p.N205K	ENST00000250003	NM_002478.4	205	aaC/aaA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061261	38061262	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	275	532	1	ENST00000250448.2:c.727dup	p.Tyr243LeufsTer50	p.Y243Lfs*50	ENST00000250448	NM_004496.3	243	tac/tTac																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379820	17379820	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	228	671	1	ENST00000359435.4:c.205G>T	p.Gly69Cys	p.G69C	ENST00000359435	NM_001033549.1	69	Ggc/Tgc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31368136	31368136	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	134	484	1	ENST00000328111.2:c.7G>T	p.Gly3Ter	p.G3*	ENST00000328111	NM_006892.3	3	Gga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332593	153332593	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	266	437	0	ENST00000281708.4:c.363G>C	p.Glu121Asp	p.E121D	ENST00000281708	NM_033632.3	121	gaG/gaC																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31410892	31410892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	159	601	0	ENST00000344624.3:c.3628G>A	p.Val1210Met	p.V1210M	ENST00000344624		1210	Gtg/Atg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180035992	180035992	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1262	163	625	0	ENST00000261937.6:c.3869G>T	p.Arg1290Met	p.R1290M	ENST00000261937	NM_182925.4	1290	aGg/aTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047629	180047629	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	496	465	0	ENST00000261937.6:c.2386A>T	p.Ile796Phe	p.I796F	ENST00000261937	NM_182925.4	796	Atc/Ttc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455118	50455118	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	131	296	0	ENST00000331340.3:c.665G>T	p.Arg222Leu	p.R222L	ENST00000331340	NM_006060.4	222	cGc/cTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151902259	151902259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	153	290	0	ENST00000262189.6:c.3893C>T	p.Thr1298Ile	p.T1298I	ENST00000262189	NM_170606.2	1298	aCc/aTc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372253	55372253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	136	440	3	ENST00000297316.4:c.943C>T	p.Pro315Ser	p.P315S	ENST00000297316	NM_022454.3	315	Ccg/Tcg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228342	53228342	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0033894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	143	444	0	ENST00000375401.3:c.2062-2A>G		p.X688_splice	ENST00000375401	NM_004187.3	688																																																																																
ATRX	546	MSKCC	GRCh37	X	76764011	76764011	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	623	701	0	ENST00000373344.5:c.7297C>G	p.Leu2433Val	p.L2433V	ENST00000373344	NM_000489.3	2433	Ctg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	115	302	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0034059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	105	542	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	110	481	0	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443536	49443536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	90	437	0	ENST00000301067.7:c.3835del	p.Ile1279SerfsTer51	p.I1279Sfs*51	ENST00000301067	NM_003482.3	1279	Atc/tc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562387	95562387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	77	317	0	ENST00000343455.3:c.4870G>T	p.Ala1624Ser	p.A1624S	ENST00000343455	NM_177438.2	1624	Gct/Tct																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573556	48573556	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	28	192	0	ENST00000342988.3:c.140T>C	p.Leu47Pro	p.L47P	ENST00000342988	NM_005359.5	47	cTg/cCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	148	663	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30134512	30134512	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	54	316	0	ENST00000263025.4:c.19C>A	p.Gln7Lys	p.Q7K	ENST00000263025	NM_002746.2	7	Cag/Aag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221320	1221320	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	196	723	0	ENST00000326873.7:c.843delG	p.Leu282SerfsTer5	p.L282Sfs*5	ENST00000326873	NM_000455.4	281	ccG/cc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610358	10610358	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	232	952	2	ENST00000171111.5:c.352C>T	p.Gln118Ter	p.Q118*	ENST00000171111	NM_203500.1	118	Cag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390995	89390995	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	116	671	0	ENST00000336596.2:c.1061G>T	p.Arg354Leu	p.R354L	ENST00000336596	NM_005233.5	354	cGg/cTg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	60	671	0	ENST00000347630.2:c.392G>C	p.Trp131Ser	p.W131S	ENST00000347630	NM_001007230.1	131	tGg/tCg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0034191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	134	389	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0034191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	507	654	5	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112174490	112174493	+	frameshift_variant	Frame_Shift_Del	DEL	CAAT	CAAT	-	rs1267727476		P-0034191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	104	357	0	ENST00000257430.4:c.3202_3205del	p.Ser1068GlyfsTer57	p.S1068Gfs*57	ENST00000257430	NM_000038.5	1067	CAATca/ca																																																																															
APC	324	MSKCC	GRCh37	5	112175650	112175651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	157	340	0	ENST00000257430.4:c.4364dup	p.Asn1455LysfsTer2	p.N1455Kfs*2	ENST00000257430	NM_000038.5	1453	-/A																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112283	115112283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	102	247	0	ENST00000257566.3:c.1457C>T	p.Thr486Met	p.T486M	ENST00000257566	NM_016569.3	486	aCg/aTg																																																																															
RB1	5925	MSKCC	GRCh37	13	49039183	49039183	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	87	464	0	ENST00000267163.4:c.2261T>C	p.Val754Ala	p.V754A	ENST00000267163	NM_000321.2	754	gTa/gCa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222371	2222371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	167	619	0	ENST00000326181.6:c.655C>T	p.Arg219Trp	p.R219W	ENST00000326181	NM_032271.2	219	Cgg/Tgg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58734200	58734200	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0034191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	150	476	0	ENST00000305921.3:c.1258A>C	p.Lys420Gln	p.K420Q	ENST00000305921	NM_003620.3	420	Aag/Cag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732923	30732924	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTGTGTGAGACGTTGACTGAGTGCTGGGACCAC			P-0034191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	52	287	0	ENST00000359013.4:c.1613_1645dup	p.Val538_His548dup	p.V538_H548dup	ENST00000359013	NM_001024847.2	538	-/GTGTGTGAGACGTTGACTGAGTGCTGGGACCAC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0034192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	344	573	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0034192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	172	446	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
MPL	4352	MSKCC	GRCh37	1	43812204	43812204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	380	348	0	ENST00000372470.3:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000372470	NM_005373.2	357	Cga/Tga																																																																															
RIT1	6016	MSKCC	GRCh37	1	155880497	155880497	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	37	340	0	ENST00000368323.3:c.56C>A	p.Ser19Ter	p.S19*	ENST00000368323	NM_006912.5	19	tCa/tAa																																																																															
ATR	545	MSKCC	GRCh37	3	142286983	142286983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	218	254	0	ENST00000350721.4:c.73G>A	p.Glu25Lys	p.E25K	ENST00000350721	NM_001184.3	25	Gaa/Aaa																																																																															
KDR	3791	MSKCC	GRCh37	4	55972041	55972041	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	138	275	0	ENST00000263923.4:c.1603A>G	p.Lys535Glu	p.K535E	ENST00000263923	NM_002253.2	535	Aaa/Gaa																																																																															
TERT	7015	MSKCC	GRCh37	5	1294125	1294127	+	missense_variant	Missense_Mutation	ONP	CGT	CGT	AGG			P-0004263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	77	230	0	ENST00000310581.5:c.874_876delinsCCT	p.Thr292Pro	p.T292P	ENST00000310581	NM_198253.2	292	ACG/CCT																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645162	86645162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	316	191	0	ENST00000274376.6:c.1234G>A	p.Gly412Arg	p.G412R	ENST00000274376	NM_002890.2	412	Gga/Aga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419910	152419910	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778116774		P-0004263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	205	201	0	ENST00000206249.3:c.1597G>A	p.Val533Met	p.V533M	ENST00000206249	NM_000125.3	533	Gtg/Atg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157150455	157150455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	253	275	0	ENST00000346085.5:c.1637C>T	p.Pro546Leu	p.P546L	ENST00000346085	NM_020732.3	546	cCa/cTa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444491	50444492	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0004263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	107	45	0	ENST00000331340.3:c.421_421+1delinsTT		p.X141_splice	ENST00000331340	NM_006060.4	141																																																																																
SMARCD1	6602	MSKCC	GRCh37	12	50490686	50490686	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	376	322	0	ENST00000394963.4:c.1323G>T	p.Met441Ile	p.M441I	ENST00000394963	NM_003076.4	441	atG/atT																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109773	115109773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199572544		P-0004263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	171	277	0	ENST00000257566.3:c.2105G>A	p.Ser702Asn	p.S702N	ENST00000257566	NM_016569.3	702	aGc/aAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28963995	28963995	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	236	318	0	ENST00000282397.4:c.1907G>T	p.Cys636Phe	p.C636F	ENST00000282397	NM_002019.4	636	tGc/tTc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99454619	99454619	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	355	262	0	ENST00000268035.6:c.1538G>T	p.Arg513Leu	p.R513L	ENST00000268035	NM_000875.3	513	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0004263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	246	196	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246014	41246014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	295	278	0	ENST00000357654.3:c.1534C>T	p.Leu512Phe	p.L512F	ENST00000357654	NM_007294.3	512	Ctt/Ttt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740677	58740677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	231	580	0	ENST00000305921.3:c.1582A>T	p.Arg528Ter	p.R528*	ENST00000305921	NM_003620.3	528	Aga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1220443	1220443	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786202466		P-0004263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	255	384	0	ENST00000326873.7:c.536C>T	p.Pro179Leu	p.P179L	ENST00000326873	NM_000455.4	179	cCg/cTg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9543551	9543551	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	310	327	0	ENST00000353224.5:c.1603G>C	p.Val535Leu	p.V535L	ENST00000353224	NM_177990.2	535	Gtg/Ctg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9543586	9543586	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	365	387	1	ENST00000353224.5:c.1568T>A	p.Met523Lys	p.M523K	ENST00000353224	NM_177990.2	523	aTg/aAg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46256753	46256753	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	772	446	0	ENST00000371998.3:c.809G>C	p.Arg270Thr	p.R270T	ENST00000371998		270	aGa/aCa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11129670	11129671	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	195	293	0	ENST00000344626.4:c.2481dup	p.Ser828LeufsTer117	p.S828Lfs*117	ENST00000344626	NM_003072.3	826	gcc/gCcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	288	447	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577555	7577555	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs375874539		P-0008854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	139	356	0	ENST00000269305.4:c.726C>G	p.Cys242Trp	p.C242W	ENST00000269305	NM_001126112.2	242	tgC/tgG																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576214	88576214	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	53	287	0	ENST00000360948.2:c.1459G>C	p.Gly487Arg	p.G487R	ENST00000360948	NM_001012338.2	487	Ggc/Cgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259640	16259640	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	85	392	0	ENST00000375759.3:c.6905G>T	p.Arg2302Ile	p.R2302I	ENST00000375759	NM_015001.2	2302	aGa/aTa																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086081	16086081	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	130	385	1	ENST00000281043.3:c.1257G>T	p.Lys419Asn	p.K419N	ENST00000281043	NM_005378.4	419	aaG/aaT																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871236	35871236	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	205	478	0	ENST00000303115.3:c.458C>A	p.Ser153Ter	p.S153*	ENST00000303115	NM_002185.3	153	tCa/tAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177899	56177899	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	138	425	0	ENST00000399503.3:c.2872A>T	p.Thr958Ser	p.T958S	ENST00000399503	NM_005921.1	958	Aca/Tca																																																																															
APC	324	MSKCC	GRCh37	5	112175538	112175538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	42	343	1	ENST00000257430.4:c.4247G>A	p.Gly1416Asp	p.G1416D	ENST00000257430	NM_000038.5	1416	gGc/gAc																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43748582	43748582	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1335	136	563	0	ENST00000523873.1:c.536C>G	p.Pro179Arg	p.P179R	ENST00000523873		179	cCt/cGt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729267	41729267	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1867	123	621	0	ENST00000242208.4:c.1262A>T	p.Glu421Val	p.E421V	ENST00000242208	NM_002192.2	421	gAg/gTg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372500	55372500	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	118	447	0	ENST00000297316.4:c.1190C>A	p.Ser397Ter	p.S397*	ENST00000297316	NM_022454.3	397	tCg/tAg																																																																															
SUFU	51684	MSKCC	GRCh37	10	104353818	104353818	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	77	344	0	ENST00000369902.3:c.752T>G	p.Leu251Arg	p.L251R	ENST00000369902	NM_016169.3	251	cTg/cGg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26828905	26828905	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0008854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	54	333	0	ENST00000381527.3:c.127G>T	p.Gly43Trp	p.G43W	ENST00000381527	NM_001260.1	43	Ggg/Tgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906828	32906828	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	72	519	0	ENST00000380152.3:c.1213G>T	p.Gly405Ter	p.G405*	ENST00000380152		405	Gga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3795339	3795339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	91	411	0	ENST00000262367.5:c.3853G>A	p.Glu1285Lys	p.E1285K	ENST00000262367	NM_004380.2	1285	Gag/Aag																																																																															
NUP93	9688	MSKCC	GRCh37	16	56864541	56864541	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1344	142	643	0	ENST00000308159.5:c.1029C>G	p.His343Gln	p.H343Q	ENST00000308159	NM_014669.4	343	caC/caG																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644891	67644891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	106	433	3	ENST00000264010.4:c.156G>T	p.Gln52His	p.Q52H	ENST00000264010	NM_006565.3	52	caG/caT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993572	72993572	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1128	123	563	0	ENST00000268489.5:c.473G>T	p.Gly158Val	p.G158V	ENST00000268489	NM_006885.3	158	gGg/gTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245841	5245841	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	95	433	1	ENST00000357368.4:c.934G>T	p.Val312Leu	p.V312L	ENST00000357368	NM_002850.3	312	Gtg/Ttg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413151	63413151	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	63	269	0	ENST00000330258.3:c.16G>C	p.Asp6His	p.D6H	ENST00000330258	NM_152424.3	6	Gat/Cat																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231723	66231723	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	88	493	0	ENST00000273854.3:c.1977del	p.Asn660IlefsTer11	p.N660Ifs*11	ENST00000273854	NM_004439.5	659	ccC/cc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133812	55133816	+	missense_variant	Missense_Mutation	ONP	ACCCA	ACCCA	GCCCT			P-0008854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	76	467	0	ENST00000257290.5:c.1025_1029delinsGCCCT	p.Tyr342Cys	p.Y342C	ENST00000257290	NM_006206.4	342	tACCCA/tGCCCT																																																																															
PMS1	5378	MSKCC	GRCh37	2	190742131	190742131	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	366	198	0	ENST00000441310.2:c.2768A>G	p.His923Arg	p.H923R	ENST00000441310	NM_000534.4	923	cAt/cGt																																																																															
BARD1	580	MSKCC	GRCh37	2	215617274	215617274	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	345	202	0	ENST00000260947.4:c.1574T>G	p.Ile525Arg	p.I525R	ENST00000260947	NM_000465.2	525	aTa/aGa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662124	227662124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	475	325	0	ENST00000305123.5:c.1331G>T	p.Ser444Ile	p.S444I	ENST00000305123	NM_005544.2	444	aGt/aTt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176683978	176683978	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	1317	527	0	ENST00000439151.2:c.4792C>T	p.Gln1598Ter	p.Q1598*	ENST00000439151	NM_022455.4	1598	Cag/Tag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508049	106508049	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	211	176	0	ENST00000359195.3:c.43G>T	p.Asp15Tyr	p.D15Y	ENST00000359195	NM_002649.2	15	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	412	273	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864360	57864360	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	1039	627	0	ENST00000228682.2:c.1837G>T	p.Gly613Cys	p.G613C	ENST00000228682	NM_005269.2	613	Ggt/Tgt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88726665	88726665	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	228	324	1	ENST00000360948.2:c.379C>A	p.Pro127Thr	p.P127T	ENST00000360948	NM_001012338.2	127	Ccc/Acc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692990	89692990	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	391	180	0	ENST00000371953.3:c.475del	p.Arg159GlyfsTer8	p.R159Gfs*8	ENST00000371953	NM_000314.4	158	gtA/gt																																																																															
MGA	23269	MSKCC	GRCh37	15	42021480	42021480	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1063	553	610	0	ENST00000219905.7:c.3779del	p.Pro1260HisfsTer31	p.P1260Hfs*31	ENST00000219905	NM_001164273.1	1259	tCc/tc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	68	327	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TET1	80312	MSKCC	GRCh37	10	70406064	70406064	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	183	543	1	ENST00000373644.4:c.3578C>A	p.Ser1193Ter	p.S1193*	ENST00000373644	NM_030625.2	1193	tCg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	141	644	1	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	42	218	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913283		P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	96	309	0	ENST00000263967.3:c.3129G>T	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atT																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793710	89793710	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	101	319	0	ENST00000336032.3:c.779A>C	p.Lys260Thr	p.K260T	ENST00000336032	NM_006813.2	260	aAa/aCa																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	49	179	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911181	32911181	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	24	405	0	ENST00000380152.3:c.2689G>T	p.Glu897Ter	p.E897*	ENST00000380152		897	Gaa/Taa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520000	106520000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	64	231	0	ENST00000359195.3:c.2428C>A	p.Pro810Thr	p.P810T	ENST00000359195	NM_002649.2	810	Cca/Aca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913155	32913155	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	93	382	0	ENST00000380152.3:c.4663G>T	p.Glu1555Ter	p.E1555*	ENST00000380152		1555	Gaa/Taa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681733	30681733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	146	516	0	ENST00000376406.3:c.364C>A	p.Leu122Ile	p.L122I	ENST00000376406	NM_014641.2	122	Ctc/Atc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332849	152332849	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	143	510	0	ENST00000206249.3:c.1155G>T	p.Glu385Asp	p.E385D	ENST00000206249	NM_000125.3	385	gaG/gaT																																																																															
SPEN	23013	MSKCC	GRCh37	1	16247393	16247393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	55	215	0	ENST00000375759.3:c.1664C>T	p.Ala555Val	p.A555V	ENST00000375759	NM_015001.2	555	gCc/gTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276860	15276861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs753725730		P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	134	670	3	ENST00000263388.2:c.5404dup	p.Ala1802GlyfsTer8	p.A1802Gfs*8	ENST00000263388	NM_000435.2	1802	gct/gGct																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910435	32910435	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	95	358	0	ENST00000380152.3:c.1943C>A	p.Ser648Ter	p.S648*	ENST00000380152		648	tCa/tAa																																																																															
ATM	472	MSKCC	GRCh37	11	108205711	108205711	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	58	287	0	ENST00000278616.4:c.8026G>T	p.Glu2676Ter	p.E2676*	ENST00000278616	NM_000051.3	2676	Gaa/Taa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231757	66231757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	39	397	0	ENST00000273854.3:c.1943G>T	p.Arg648Ile	p.R648I	ENST00000273854	NM_004439.5	648	aGa/aTa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739790	41739790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	44	595	0	ENST00000242208.4:c.183C>A	p.His61Gln	p.H61Q	ENST00000242208	NM_002192.2	61	caC/caA																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922867	39922867	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	142	278	0	ENST00000378444.4:c.3841G>T	p.Glu1281Ter	p.E1281*	ENST00000378444	NM_001123385.1	1281	Gaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108150330	108150330	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	103	343	0	ENST00000278616.4:c.3397G>T	p.Glu1133Ter	p.E1133*	ENST00000278616	NM_000051.3	1133	Gaa/Taa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56176614	56176614	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	111	336	0	ENST00000399503.3:c.2164G>T	p.Glu722Ter	p.E722*	ENST00000399503	NM_005921.1	722	Gaa/Taa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610715	52610715	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	27	297	0	ENST00000394830.3:c.3459-1G>T		p.X1153_splice	ENST00000394830	NM_018313.4	1153																																																																																
ARID2	196528	MSKCC	GRCh37	12	46246158	46246158	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	25	390	0	ENST00000334344.6:c.4252G>T	p.Gly1418Ter	p.G1418*	ENST00000334344	NM_152641.2	1418	Gga/Tga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32915295	32915295	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	140	606	0	ENST00000380152.3:c.6803G>T	p.Arg2268Ile	p.R2268I	ENST00000380152		2268	aGa/aTa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056420	180056420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	81	473	0	ENST00000261937.6:c.824G>A	p.Arg275Gln	p.R275Q	ENST00000261937	NM_182925.4	275	cGg/cAg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259479	16259480	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	27	424	1	ENST00000375759.3:c.6750dupC	p.Ala2251ArgfsTer10	p.A2251Rfs*10	ENST00000375759	NM_015001.2	2248	-/C																																																																															
JAK1	3716	MSKCC	GRCh37	1	65304224	65304224	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	144	422	0	ENST00000342505.4:c.2891T>G	p.Leu964Arg	p.L964R	ENST00000342505	NM_002227.2	964	cTt/cGt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162743292	162743292	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	96	324	0	ENST00000367921.3:c.1762T>A	p.Phe588Ile	p.F588I	ENST00000367921	NM_006182.2	588	Ttc/Atc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163317623	163317623	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	80	221	0	ENST00000271452.3:c.1019C>A	p.Ser340Ter	p.S340*	ENST00000271452	NM_145697.2	340	tCg/tAg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193202172	193202172	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	104	268	0	ENST00000367435.3:c.1204G>T	p.Glu402Ter	p.E402*	ENST00000367435	NM_024529.4	402	Gaa/Taa																																																																															
PARP1	142	MSKCC	GRCh37	1	226576395	226576395	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	51	528	0	ENST00000366794.5:c.679G>T	p.Glu227Ter	p.E227*	ENST00000366794	NM_001618.3	227	Gaa/Taa																																																																															
FH	2271	MSKCC	GRCh37	1	241680556	241680556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	136	577	0	ENST00000366560.3:c.193G>T	p.Asp65Tyr	p.D65Y	ENST00000366560	NM_000143.3	65	Gat/Tat																																																																															
PGR	5241	MSKCC	GRCh37	11	100912704	100912704	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	36	447	0	ENST00000325455.5:c.2618T>G	p.Leu873Arg	p.L873R	ENST00000325455	NM_001202474.3	873	cTt/cGt																																																																															
ATM	472	MSKCC	GRCh37	11	108236180	108236180	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	38	602	0	ENST00000278616.4:c.9116C>A	p.Ala3039Asp	p.A3039D	ENST00000278616	NM_000051.3	3039	gCc/gAc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505413	125505413	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	24	293	2	ENST00000428830.2:c.703G>T	p.Asp235Tyr	p.D235Y	ENST00000428830	NM_001114121.2	235	Gat/Tat																																																																															
KDM5A	5927	MSKCC	GRCh37	12	417122	417122	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	124	395	0	ENST00000399788.2:c.3428C>A	p.Ser1143Tyr	p.S1143Y	ENST00000399788	NM_001042603.1	1143	tCt/tAt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641509	18641509	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	74	391	0	ENST00000266497.5:c.2508A>C	p.Lys836Asn	p.K836N	ENST00000266497		836	aaA/aaC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435178	49435178	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	24	414	0	ENST00000301067.7:c.6375C>A	p.Phe2125Leu	p.F2125L	ENST00000301067	NM_003482.3	2125	ttC/ttA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437468	49437468	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	126	565	0	ENST00000301067.7:c.5417C>A	p.Ala1806Asp	p.A1806D	ENST00000301067	NM_003482.3	1806	gCc/gAc																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233086	69233086	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	69	310	0	ENST00000462284.1:c.951G>T	p.Met317Ile	p.M317I	ENST00000462284	NM_002392.5	317	atG/atT																																																																															
MSI1	4440	MSKCC	GRCh37	12	120785302	120785302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	71	541	0	ENST00000257552.2:c.806C>A	p.Ala269Asp	p.A269D	ENST00000257552	NM_002442.3	269	gCc/gAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133252691	133252691	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	26	475	0	ENST00000320574.5:c.1009G>T	p.Glu337Ter	p.E337*	ENST00000320574	NM_006231.2	337	Gaa/Taa																																																																															
RB1	5925	MSKCC	GRCh37	13	48955403	48955403	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	77	295	0	ENST00000267163.4:c.1519G>T	p.Asp507Tyr	p.D507Y	ENST00000267163	NM_000321.2	507	Gat/Tat																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068922	30068922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	126	689	0	ENST00000331968.5:c.2007G>T	p.Met669Ile	p.M669I	ENST00000331968	NM_002742.2	669	atG/atT																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100166	30100166	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	202	562	0	ENST00000331968.5:c.1454A>T	p.Asn485Ile	p.N485I	ENST00000331968	NM_002742.2	485	aAt/aTt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562226	95562226	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	152	371	0	ENST00000343455.3:c.5031C>A	p.Phe1677Leu	p.F1677L	ENST00000343455	NM_177438.2	1677	ttC/ttA																																																																															
MGA	23269	MSKCC	GRCh37	15	41999995	41999995	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	78	658	0	ENST00000219905.7:c.2258C>A	p.Pro753His	p.P753H	ENST00000219905	NM_001164273.1	753	cCt/cAt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482814	67482814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	137	628	1	ENST00000327367.4:c.1218G>T	p.Trp406Cys	p.W406C	ENST00000327367	NM_005902.3	406	tgG/tgT																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354334	354334	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	36	692	0	ENST00000262320.3:c.1224G>T	p.Lys408Asn	p.K408N	ENST00000262320	NM_003502.3	408	aaG/aaT																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647697	3647697	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	108	654	0	ENST00000294008.3:c.1367-1G>T		p.X456_splice	ENST00000294008	NM_032444.2	456																																																																																
PALB2	79728	MSKCC	GRCh37	16	23641575	23641575	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	38	628	0	ENST00000261584.4:c.1900C>A	p.Pro634Thr	p.P634T	ENST00000261584	NM_024675.3	634	Cca/Aca																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645377	67645377	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	115	376	0	ENST00000264010.4:c.642T>G	p.Tyr214Ter	p.Y214*	ENST00000264010	NM_006565.3	214	taT/taG																																																																															
CTCF	10664	MSKCC	GRCh37	16	67650662	67650662	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	31	453	0	ENST00000264010.4:c.967A>G	p.Lys323Glu	p.K323E	ENST00000264010	NM_006565.3	323	Aag/Gag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671652	67671652	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	50	473	0	ENST00000264010.4:c.2061A>T	p.Glu687Asp	p.E687D	ENST00000264010	NM_006565.3	687	gaA/gaT																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346627	89346627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	66	452	0	ENST00000301030.4:c.6323G>T	p.Gly2108Val	p.G2108V	ENST00000301030	NM_001256183.1	2108	gGc/gTc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348410	89348410	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	211	765	1	ENST00000301030.4:c.4540C>A	p.Leu1514Ile	p.L1514I	ENST00000301030	NM_001256183.1	1514	Ctc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7573997	7573997	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	41	686	0	ENST00000269305.4:c.1030C>A	p.Leu344Met	p.L344M	ENST00000269305	NM_001126112.2	344	Ctg/Atg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961030	15961030	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	136	373	0	ENST00000268712.3:c.6190G>T	p.Ala2064Ser	p.A2064S	ENST00000268712	NM_006311.3	2064	Gct/Tct																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40461433	40461433	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	58	696	0	ENST00000345506.4:c.2153C>A	p.Ala718Asp	p.A718D	ENST00000345506	NM_003152.3	718	gCc/gAc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40477068	40477068	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	93	440	2	ENST00000264657.5:c.1377G>T	p.Leu459Phe	p.L459F	ENST00000264657	NM_139276.2	459	ttG/ttT																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59885860	59885860	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	136	480	0	ENST00000259008.2:c.886G>T	p.Glu296Ter	p.E296*	ENST00000259008	NM_032043.2	296	Gag/Tag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63526218	63526218	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	153	465	0	ENST00000307078.5:c.2408A>G	p.Tyr803Cys	p.Y803C	ENST00000307078	NM_004655.3	803	tAt/tGt																																																																															
PMAIP1	5366	MSKCC	GRCh37	18	57569903	57569903	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	57	258	0	ENST00000316660.6:c.83A>G	p.Gln28Arg	p.Q28R	ENST00000316660	NM_021127.2	28	cAa/cGa																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4097329	4097329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	27	451	0	ENST00000262948.5:c.932A>G	p.Asp311Gly	p.D311G	ENST00000262948	NM_030662.3	311	gAt/gGt																																																																															
CARM1	10498	MSKCC	GRCh37	19	11015629	11015629	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	108	432	0	ENST00000327064.4:c.223G>T	p.Glu75Ter	p.E75*	ENST00000327064	NM_199141.1	75	Gaa/Taa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39237792	39237792	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	167	464	1	ENST00000402219.2:c.2443G>T	p.Glu815Ter	p.E815*	ENST00000402219	NM_005633.3	815	Gaa/Taa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39241033	39241033	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	137	483	0	ENST00000402219.2:c.2038G>T	p.Glu680Ter	p.E680*	ENST00000402219	NM_005633.3	680	Gaa/Taa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39250011	39250011	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	145	597	0	ENST00000402219.2:c.1558G>C	p.Asp520His	p.D520H	ENST00000402219	NM_005633.3	520	Gat/Cat																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872974	136872974	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	84	381	0	ENST00000241393.3:c.524C>A	p.Ala175Asp	p.A175D	ENST00000241393	NM_003467.2	175	gCc/gAc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158595035	158595035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	145	425	0	ENST00000263640.3:c.1312G>T	p.Asp438Tyr	p.D438Y	ENST00000263640	NM_001105.4	438	Gac/Tac																																																																															
CASP8	841	MSKCC	GRCh37	2	202141693	202141693	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	27	264	0	ENST00000358485.4:c.979+2T>C		p.X327_splice	ENST00000358485	NM_001080125.1	327																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212570050	212570050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	97	445	0	ENST00000342788.4:c.1191G>T	p.Glu397Asp	p.E397D	ENST00000342788	NM_005235.2	397	gaG/gaT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812165	212812165	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	59	294	0	ENST00000342788.4:c.411G>T	p.Lys137Asn	p.K137N	ENST00000342788	NM_005235.2	137	aaG/aaT																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660757	227660757	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	93	547	0	ENST00000305123.5:c.2698G>T	p.Glu900Ter	p.E900*	ENST00000305123	NM_005544.2	900	Gaa/Taa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31020757	31020757	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	41	216	0	ENST00000375687.4:c.1054G>T	p.Glu352Ter	p.E352*	ENST00000375687	NM_015338.5	352	Gaa/Taa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31020765	31020765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	55	205	0	ENST00000375687.4:c.1062C>A	p.Phe354Leu	p.F354L	ENST00000375687	NM_015338.5	354	ttC/ttA																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164731	36164731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	151	617	0	ENST00000300305.3:c.1144C>T	p.Pro382Ser	p.P382S	ENST00000300305		382	Ccg/Tcg																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288524	21288524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	134	574	2	ENST00000354336.3:c.769G>T	p.Ala257Ser	p.A257S	ENST00000354336	NM_005207.3	257	Gca/Tca																																																																															
EP300	2033	MSKCC	GRCh37	22	41523732	41523732	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	42	662	0	ENST00000263253.7:c.1148A>G	p.Gln383Arg	p.Q383R	ENST00000263253	NM_001429.3	383	cAg/cGg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626671	12626671	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	126	519	0	ENST00000251849.4:c.1618G>T	p.Glu540Ter	p.E540*	ENST00000251849	NM_002880.3	540	Gaa/Taa																																																																															
MST1R	4486	MSKCC	GRCh37	3	49924769	49924769	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	152	637	0	ENST00000296474.3:c.4174C>A	p.Pro1392Thr	p.P1392T	ENST00000296474	NM_002447.2	1392	Cca/Aca																																																																															
MITF	4286	MSKCC	GRCh37	3	69987202	69987202	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	89	345	0	ENST00000352241.4:c.582+2T>A		p.X194_splice	ENST00000352241	NM_198159.2	194																																																																																
SHQ1	55164	MSKCC	GRCh37	3	72799734	72799734	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	174	628	0	ENST00000325599.8:c.1435G>T	p.Glu479Ter	p.E479*	ENST00000325599	NM_018130.2	479	Gaa/Taa																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72891457	72891457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	143	466	0	ENST00000325599.8:c.305C>T	p.Thr102Ile	p.T102I	ENST00000325599	NM_018130.2	102	aCa/aTa																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73047278	73047278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	143	439	0	ENST00000356692.5:c.85C>A	p.Leu29Ile	p.L29I	ENST00000356692		29	Ctt/Att																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138431122	138431122	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	147	352	0	ENST00000289153.2:c.1327A>C	p.Thr443Pro	p.T443P	ENST00000289153	NM_006219.2	443	Acg/Ccg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664867	138664867	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	15	99	0	ENST00000330315.3:c.698C>A	p.Ala233Asp	p.A233D	ENST00000330315	NM_023067.3	233	gCc/gAc																																																																															
ATR	545	MSKCC	GRCh37	3	142215241	142215241	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	27	439	0	ENST00000350721.4:c.5860G>T	p.Glu1954Ter	p.E1954*	ENST00000350721	NM_001184.3	1954	Gaa/Taa																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430749	181430749	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	46	590	0	ENST00000325404.1:c.601G>T	p.Asp201Tyr	p.D201Y	ENST00000325404	NM_003106.3	201	Gac/Tac																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504340	186504340	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	18	231	0	ENST00000323963.5:c.677A>C	p.Lys226Thr	p.K226T	ENST00000323963		226	aAa/aCa																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186506949	186506949	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	19	270	0	ENST00000323963.5:c.1115T>C	p.Val372Ala	p.V372A	ENST00000323963		372	gTg/gCg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806182	1806182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	140	655	0	ENST00000260795.2:c.1201C>A	p.Pro401Thr	p.P401T	ENST00000260795		401	Ccc/Acc																																																																															
KDR	3791	MSKCC	GRCh37	4	55971117	55971117	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	136	593	0	ENST00000263923.4:c.1680G>T	p.Gln560His	p.Q560H	ENST00000263923	NM_002253.2	560	caG/caT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509932	187509932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	105	381	3	ENST00000441802.2:c.13581C>A	p.Phe4527Leu	p.F4527L	ENST00000441802	NM_005245.3	4527	ttC/ttA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524798	187524798	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	87	679	0	ENST00000441802.2:c.10882A>G	p.Thr3628Ala	p.T3628A	ENST00000441802	NM_005245.3	3628	Aca/Gca																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38943046	38943046	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	40	279	0	ENST00000357387.3:c.4941T>A	p.Phe1647Leu	p.F1647L	ENST00000357387	NM_152756.3	1647	ttT/ttA																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38944618	38944618	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	37	426	0	ENST00000357387.3:c.4843G>T	p.Glu1615Ter	p.E1615*	ENST00000357387	NM_152756.3	1615	Gaa/Taa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945785	38945785	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	17	296	0	ENST00000357387.3:c.4441C>A	p.His1481Asn	p.H1481N	ENST00000357387	NM_152756.3	1481	Cac/Aac																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752361	57752361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	99	422	0	ENST00000274289.3:c.1212G>T	p.Lys404Asn	p.K404N	ENST00000274289	NM_006622.3	404	aaG/aaT																																																																															
MSH3	4437	MSKCC	GRCh37	5	80083394	80083394	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	56	598	1	ENST00000265081.6:c.2446G>T	p.Glu816Ter	p.E816*	ENST00000265081	NM_002439.4	816	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112157678	112157678	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	29	431	0	ENST00000257430.4:c.1398G>T	p.Met466Ile	p.M466I	ENST00000257430	NM_000038.5	466	atG/atT																																																																															
APC	324	MSKCC	GRCh37	5	112175806	112175806	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	69	278	0	ENST00000257430.4:c.4515C>A	p.Ser1505Arg	p.S1505R	ENST00000257430	NM_000038.5	1505	agC/agA																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638539	176638539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	140	621	0	ENST00000439151.2:c.3139G>T	p.Ala1047Ser	p.A1047S	ENST00000439151	NM_022455.4	1047	Gcc/Tcc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721984	176721984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	38	470	0	ENST00000439151.2:c.7615C>A	p.Leu2539Ile	p.L2539I	ENST00000439151	NM_022455.4	2539	Ctt/Att																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190323	32190323	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	51	445	0	ENST00000375023.3:c.416G>C	p.Gly139Ala	p.G139A	ENST00000375023	NM_004557.3	139	gGc/gCc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798492	32798492	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	169	720	0	ENST00000374899.4:c.1364C>A	p.Ser455Ter	p.S455*	ENST00000374899	NM_018833.2	455	tCa/tAa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800496	32800496	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	160	784	0	ENST00000374899.4:c.1051G>T	p.Glu351Ter	p.E351*	ENST00000374899	NM_018833.2	351	Gaa/Taa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120887	94120887	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	61	389	0	ENST00000369303.4:c.164G>T	p.Trp55Leu	p.W55L	ENST00000369303	NM_004440.3	55	tGg/tTg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555065	106555065	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	154	482	0	ENST00000369096.4:c.2182G>T	p.Glu728Ter	p.E728*	ENST00000369096	NM_001198.3	728	Gaa/Taa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555216	106555216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	96	466	0	ENST00000369096.4:c.2333G>T	p.Arg778Ile	p.R778I	ENST00000369096	NM_001198.3	778	aGa/aTa																																																																															
SESN1	27244	MSKCC	GRCh37	6	109415129	109415129	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	186	855	0	ENST00000436639.2:c.148T>A	p.Ser50Thr	p.S50T	ENST00000436639	NM_014454.2	50	Tca/Aca																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001072	150001072	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	106	474	0	ENST00000253339.5:c.2532G>T	p.Leu844Phe	p.L844F	ENST00000253339		844	ttG/ttT																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004238	150004238	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	109	350	0	ENST00000253339.5:c.1987C>A	p.Gln663Lys	p.Q663K	ENST00000253339		663	Caa/Aaa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150022982	150022982	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	60	642	0	ENST00000253339.5:c.281C>A	p.Ser94Tyr	p.S94Y	ENST00000253339		94	tCt/tAt																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026395	6026395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	28	401	0	ENST00000265849.7:c.2001G>T	p.Glu667Asp	p.E667D	ENST00000265849	NM_000535.5	667	gaG/gaT																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739888	41739888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	89	357	1	ENST00000242208.4:c.85C>A	p.His29Asn	p.H29N	ENST00000242208	NM_002192.2	29	Cac/Aac																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50358679	50358679	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	57	251	0	ENST00000331340.3:c.22G>T	p.Asp8Tyr	p.D8Y	ENST00000331340	NM_006060.4	8	Gac/Tac																																																																															
HGF	3082	MSKCC	GRCh37	7	81334756	81334756	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	150	552	0	ENST00000222390.5:c.1960G>T	p.Glu654Ter	p.E654*	ENST00000222390	NM_000601.4	654	Gag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81388044	81388044	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	70	452	0	ENST00000222390.5:c.331G>T	p.Glu111Ter	p.E111*	ENST00000222390	NM_000601.4	111	Gaa/Taa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508531	106508531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	44	261	0	ENST00000359195.3:c.525C>A	p.Phe175Leu	p.F175L	ENST00000359195	NM_002649.2	175	ttC/ttA																																																																															
MET	4233	MSKCC	GRCh37	7	116371905	116371905	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	137	462	0	ENST00000397752.3:c.1384T>A	p.Phe462Ile	p.F462I	ENST00000397752	NM_000245.2	462	Ttc/Atc																																																																															
MET	4233	MSKCC	GRCh37	7	116415062	116415062	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	36	553	0	ENST00000397752.3:c.3156C>G	p.His1052Gln	p.H1052Q	ENST00000397752	NM_000245.2	1052	caC/caG																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133997	38133997	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	51	516	0	ENST00000317025.8:c.3889G>T	p.Glu1297Ter	p.E1297*	ENST00000317025	NM_023034.1	1297	Gaa/Taa																																																																															
RP11-513D5.2	0	MSKCC	GRCh37	8	38194840	38194840	+	splice_acceptor_variant,non_coding_transcript_variant	Splice_Site	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	165	467	0	ENST00000527912.1:n.206-1G>T		p.X69_splice	ENST00000527912		69																																																																																
RAD21	5885	MSKCC	GRCh37	8	117864899	117864899	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	35	477	0	ENST00000297338.2:c.1210A>G	p.Arg404Gly	p.R404G	ENST00000297338	NM_006265.2	404	Agg/Ggg																																																																															
MYC	4609	MSKCC	GRCh37	8	128750835	128750835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	25	553	0	ENST00000377970.2:c.372C>A	p.Asp124Glu	p.D124E	ENST00000377970	NM_002467.4	124	gaC/gaA																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740578	145740578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	38	656	0	ENST00000428558.2:c.1439C>A	p.Ala480Asp	p.A480D	ENST00000428558	NM_004260.3	480	gCc/gAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484185	8484185	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	39	577	0	ENST00000356435.5:c.3347G>T	p.Gly1116Val	p.G1116V	ENST00000356435		1116	gGg/gTg																																																																															
FANCC	2176	MSKCC	GRCh37	9	97912370	97912370	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	102	265	0	ENST00000289081.3:c.522-1G>T		p.X174_splice	ENST00000289081	NM_000136.2	174																																																																																
TGFBR1	7046	MSKCC	GRCh37	9	101891336	101891336	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	144	557	0	ENST00000374994.4:c.297T>A	p.Tyr99Ter	p.Y99*	ENST00000374994	NM_004612.2	99	taT/taA																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101904821	101904821	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	40	348	0	ENST00000374994.4:c.809A>T	p.Asn270Ile	p.N270I	ENST00000374994	NM_004612.2	270	aAt/aTt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101908816	101908816	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	130	445	0	ENST00000374994.4:c.1180G>T	p.Glu394Ter	p.E394*	ENST00000374994	NM_004612.2	394	Gaa/Taa																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127912019	127912019	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	76	382	0	ENST00000373547.4:c.851T>G	p.Leu284Ter	p.L284*	ENST00000373547	NM_002721.4	284	tTa/tGa																																																																															
ABL1	25	MSKCC	GRCh37	9	133750333	133750333	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	53	527	0	ENST00000318560.5:c.1164G>T	p.Met388Ile	p.M388I	ENST00000318560	NM_005157.4	388	atG/atT																																																																															
ABL1	25	MSKCC	GRCh37	9	133759501	133759501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	148	589	0	ENST00000318560.5:c.1824G>T	p.Lys608Asn	p.K608N	ENST00000318560	NM_005157.4	608	aaG/aaT																																																																															
ABL1	25	MSKCC	GRCh37	9	133760859	133760859	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	120	719	0	ENST00000318560.5:c.3182A>C	p.Lys1061Thr	p.K1061T	ENST00000318560	NM_005157.4	1061	aAa/aCa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933976	39933976	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	175	348	1	ENST00000378444.4:c.623A>T	p.Asp208Val	p.D208V	ENST00000378444	NM_001123385.1	208	gAc/gTc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77043904	77043995	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTACAAGGCCTGGCAATAAAAATGGTGAATCACCTTGAGCTCCAAATGAGGCTCTCTCTTGTTCCCCATATACAAGTTCTAGAAATATGGTC	GTACAAGGCCTGGCAATAAAAATGGTGAATCACCTTGAGCTCCAAATGAGGCTCTCTCTTGTTCCCCATATACAAGTTCTAGAAATATGGTC	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	65	601	0	ENST00000356341.3:c.1414-83_1422delinsA		p.X472_splice	ENST00000356341	NM_002576.4	472																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	169	387	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	240	554	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987039	36987039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	18	529	0	ENST00000354822.5:c.650C>T	p.Ser217Leu	p.S217L	ENST00000354822	NM_001079668.2	217	tCg/tTg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141549428	141549428	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	40	237	0	ENST00000220592.5:c.2160G>C	p.Lys720Asn	p.K720N	ENST00000220592	NM_012154.3	720	aaG/aaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	103	429	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710540	114710540	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	59	278	0	ENST00000543371.1:c.28del	p.Asp10MetfsTer3	p.D10Mfs*3	ENST00000543371	NM_001198531.1	9	Ggg/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577529	7577529	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	195	613	0	ENST00000269305.4:c.752T>C	p.Ile251Thr	p.I251T	ENST00000269305	NM_001126112.2	251	aTc/aCc																																																																															
APC	324	MSKCC	GRCh37	5	112174389	112174389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	34	212	0	ENST00000257430.4:c.3098del	p.Asp1033ValfsTer4	p.D1033Vfs*4	ENST00000257430	NM_000038.5	1033	gAt/gt																																																																															
IRF4	3662	MSKCC	GRCh37	6	407582	407582	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	26	351	0	ENST00000380956.4:c.1340C>G	p.Ser447Cys	p.S447C	ENST00000380956	NM_001195286.1	447	tCc/tGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0034067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	203	468	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	126	553	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241678	55241678	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs397517085		P-0034067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	256	536	0	ENST00000275493.2:c.2126A>C	p.Glu709Ala	p.E709A	ENST00000275493	NM_005228.3	709	gAa/gCa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193121527	193121527	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	36	241	0	ENST00000367435.3:c.925A>G	p.Ile309Val	p.I309V	ENST00000367435	NM_024529.4	309	Att/Gtt																																																																															
CBFB	865	MSKCC	GRCh37	16	67063684	67063684	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	52	253	0	ENST00000412916.2:c.133C>T	p.Gln45Ter	p.Q45*	ENST00000412916		45	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0034068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	70	303	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	54	422	1	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	382	307	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	104	282	3	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339111	65339111	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	91	308	2	ENST00000342505.4:c.425delA	p.Lys142ArgfsTer26	p.K142Rfs*26	ENST00000342505	NM_002227.2	142	aAg/ag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	145	368	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	24	286	0	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
AR	367	MSKCC	GRCh37	X	66931247	66931247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	93	115	0	ENST00000374690.3:c.1889G>A	p.Arg630Gln	p.R630Q	ENST00000374690	NM_000044.3	630	cGg/cAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	15	104	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262117	10262119	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	167	508	0	ENST00000340748.4:c.2172_2174del	p.Lys725del	p.K725del	ENST00000340748		724	aaGAAa/aaa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	125	349	7	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																															
RARA	5914	MSKCC	GRCh37	17	38508182	38508184	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	18	236	0	ENST00000254066.5:c.499_501delAAG	p.Lys167del	p.K167del	ENST00000254066	NM_000964.3	164	AAG/-																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654643	67654643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	123	348	0	ENST00000264010.4:c.1130G>A	p.Arg377His	p.R377H	ENST00000264010	NM_006565.3	377	cGt/cAt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40497584	40497584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	37	399	1	ENST00000264657.5:c.365C>T	p.Ala122Val	p.A122V	ENST00000264657	NM_139276.2	122	gCg/gTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120178	70120178	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057518216		P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	108	306	0	ENST00000245479.2:c.1180C>T	p.Arg394Ter	p.R394*	ENST00000245479	NM_000346.3	394	Cga/Tga																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10247836	10247836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	206	509	0	ENST00000340748.4:c.4366C>T	p.Arg1456Trp	p.R1456W	ENST00000340748		1456	Cgg/Tgg																																																																															
PARP1	142	MSKCC	GRCh37	1	226567647	226567647	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	116	382	2	ENST00000366794.5:c.1519delA	p.Ser507AlafsTer17	p.S507Afs*17	ENST00000366794	NM_001618.3	507	Agc/gc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612346	1612346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	193	577	0	ENST00000344749.5:c.1673G>A	p.Arg558His	p.R558H	ENST00000344749	NM_001136139.2	558	cGc/cAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41574679	41574679	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	170	610	4	ENST00000263253.7:c.6970delC	p.His2324ThrfsTer29	p.H2324Tfs*29	ENST00000263253	NM_001429.3	2322	Ccc/cc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171732	36171732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	85	235	0	ENST00000300305.3:c.833C>T	p.Pro278Leu	p.P278L	ENST00000300305		278	cCg/cTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65313315	65313315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	25	355	0	ENST00000342505.4:c.1799G>A	p.Gly600Glu	p.G600E	ENST00000342505	NM_002227.2	600	gGg/gAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023290	27023290	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	37	85	0	ENST00000324856.7:c.400del	p.Ala134ArgfsTer98	p.A134Rfs*98	ENST00000324856	NM_006015.4	132	gtG/gt																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	38	564	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853077	151853077	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	125	259	1	ENST00000262189.6:c.11878C>T	p.Arg3960Ter	p.R3960*	ENST00000262189	NM_170606.2	3960	Cga/Tga																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625345	69625345	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200088042		P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	103	445	0	ENST00000334134.2:c.448G>A	p.Glu150Lys	p.E150K	ENST00000334134	NM_005247.2	150	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426774	49426774	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1334139538		P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	70	246	2	ENST00000301067.7:c.11714A>T	p.Gln3905Leu	p.Q3905L	ENST00000301067	NM_003482.3	3905	cAg/cTg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39726940	39726940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	59	121	0	ENST00000361337.2:c.938C>T	p.Thr313Met	p.T313M	ENST00000361337	NM_003286.2	313	aCg/aTg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71037144	71037144	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	64	258	0	ENST00000318789.4:c.1146+1G>A		p.X382_splice	ENST00000318789	NM_032682.5	382																																																																																
PMS1	5378	MSKCC	GRCh37	2	190732617	190732617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	117	319	0	ENST00000441310.2:c.2435G>A	p.Arg812His	p.R812H	ENST00000441310	NM_000534.4	812	cGt/cAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29661917	29661917	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	118	382	0	ENST00000358273.4:c.5878del	p.Cys1960AlafsTer19	p.C1960Afs*19	ENST00000358273	NM_001042492.2	1958	cgT/cg																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62326690	62326690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	170	536	0	ENST00000508582.2:c.3581G>A	p.Arg1194Gln	p.R1194Q	ENST00000508582		1194	cGg/cAg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099211	4099211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	124	362	0	ENST00000262948.5:c.907C>T	p.Arg303Cys	p.R303C	ENST00000262948	NM_030662.3	303	Cgc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15300216	15300216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	144	468	0	ENST00000263388.2:c.1060G>A	p.Ala354Thr	p.A354T	ENST00000263388	NM_000435.2	354	Gcc/Acc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47693856	47693856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	109	223	0	ENST00000233146.2:c.1570C>T	p.Arg524Cys	p.R524C	ENST00000233146	NM_000251.2	524	Cgt/Tgt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934994	49934994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	121	480	1	ENST00000296474.3:c.2005C>T	p.Arg669Trp	p.R669W	ENST00000296474	NM_002447.2	669	Cgg/Tgg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289862	15289862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	138	549	0	ENST00000263388.2:c.3692G>A	p.Arg1231His	p.R1231H	ENST00000263388	NM_000435.2	1231	cGt/cAt																																																																															
SUFU	51684	MSKCC	GRCh37	10	104263982	104263982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	76	205	0	ENST00000369902.3:c.73G>A	p.Ala25Thr	p.A25T	ENST00000369902	NM_016169.3	25	Gcc/Acc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21628438	21628438	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	178	417	0	ENST00000421138.2:c.1180T>A	p.Ser394Thr	p.S394T	ENST00000421138		394	Tcc/Acc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427428	49427428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	170	494	1	ENST00000301067.7:c.11060G>A	p.Gly3687Asp	p.G3687D	ENST00000301067	NM_003482.3	3687	gGt/gAt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28578254	28578254	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs191501493		P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	70	246	0	ENST00000241453.7:c.2917C>T	p.Arg973Ter	p.R973*	ENST00000241453	NM_004119.2	973	Cga/Tga																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023064	33023064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	27	252	0	ENST00000300177.4:c.173G>A	p.Arg58Gln	p.R58Q	ENST00000300177	NM_001191322.1	58	cGg/cAg																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66782084	66782084	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	98	244	0	ENST00000307102.5:c.1051G>C	p.Asp351His	p.D351H	ENST00000307102	NM_002755.3	351	Gat/Cat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827157	72827157	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	24	274	0	ENST00000268489.5:c.9424A>G	p.Thr3142Ala	p.T3142A	ENST00000268489	NM_006885.3	3142	Aca/Gca																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2191212	2191212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	129	447	0	ENST00000398665.3:c.466G>A	p.Asp156Asn	p.D156N	ENST00000398665	NM_032482.2	156	Gac/Aac																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214613	5214613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	157	515	1	ENST00000357368.4:c.4453G>A	p.Ala1485Thr	p.A1485T	ENST00000357368	NM_002850.3	1485	Gcg/Acg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10252730	10252730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	137	416	1	ENST00000340748.4:c.3235G>A	p.Gly1079Ser	p.G1079S	ENST00000340748		1079	Ggc/Agc																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17389781	17389781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	212	533	0	ENST00000359435.4:c.914G>A	p.Arg305Gln	p.R305Q	ENST00000359435	NM_001033549.1	305	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223502	36223502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	164	542	2	ENST00000222270.7:c.6052G>A	p.Gly2018Arg	p.G2018R	ENST00000222270	NM_014727.1	2018	Ggg/Agg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469969	25469969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	144	436	1	ENST00000264709.3:c.1073C>T	p.Thr358Met	p.T358M	ENST00000264709	NM_175629.2	358	aCg/aTg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095765	178095767	+	inframe_deletion	In_Frame_Del	DEL	TAT	TAT	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	127	331	0	ENST00000397062.3:c.1564_1566del	p.Ile522del	p.I522del	ENST00000397062	NM_006164.4	522	ATA/-																																																																															
BARD1	580	MSKCC	GRCh37	2	215657077	215657077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	34	296	0	ENST00000260947.4:c.308G>T	p.Ser103Ile	p.S103I	ENST00000260947	NM_000465.2	103	aGc/aTc																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22161960	22161960	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	125	320	1	ENST00000215832.6:c.295A>G	p.Lys99Glu	p.K99E	ENST00000215832	NM_002745.4	99	Aaa/Gaa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162429	47162429	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	27	278	0	ENST00000409792.3:c.3697del	p.Thr1233GlnfsTer3	p.T1233Qfs*3	ENST00000409792	NM_014159.6	1233	Aca/ca																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114287	73114287	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	43	130	0	ENST00000356692.5:c.923A>C	p.Glu308Ala	p.E308A	ENST00000356692		308	gAa/gCa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332665	153332667	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	30	337	0	ENST00000281708.4:c.289_291del	p.Glu97del	p.E97del	ENST00000281708	NM_033632.3	97	GAA/-																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627782	187627782	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	26	344	0	ENST00000441802.2:c.3200G>T	p.Gly1067Val	p.G1067V	ENST00000441802	NM_005245.3	1067	gGg/gTg																																																																															
NPM1	4869	MSKCC	GRCh37	5	170827870	170827870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	101	239	0	ENST00000296930.5:c.610G>A	p.Ala204Thr	p.A204T	ENST00000296930	NM_002520.6	204	Gca/Aca																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729442	41729442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	121	399	0	ENST00000242208.4:c.1087G>A	p.Gly363Arg	p.G363R	ENST00000242208	NM_002192.2	363	Ggg/Agg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55223603	55223603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	75	310	0	ENST00000275493.2:c.970C>T	p.Arg324Cys	p.R324C	ENST00000275493	NM_005228.3	324	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900086	151900086	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	154	304	0	ENST00000262189.6:c.4025A>G	p.Glu1342Gly	p.E1342G	ENST00000262189	NM_170606.2	1342	gAa/gGa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132815	152132815	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	45	406	0	ENST00000262189.6:c.57del	p.Glu20ArgfsTer85	p.E20Rfs*85	ENST00000262189	NM_170606.2	19	ccC/cc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738476	145738476	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	142	457	0	ENST00000428558.2:c.2509A>G	p.Thr837Ala	p.T837A	ENST00000428558	NM_004260.3	837	Acg/Gcg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499681	8499681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	176	331	1	ENST00000356435.5:c.2288C>A	p.Pro763His	p.P763H	ENST00000356435		763	cCc/cAc																																																																															
ABL1	25	MSKCC	GRCh37	9	133759676	133759676	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	25	441	1	ENST00000318560.5:c.2002del	p.Val668SerfsTer26	p.V668Sfs*26	ENST00000318560	NM_005157.4	667	Ggg/gg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139563037	139563037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	163	535	1	ENST00000308874.7:c.109G>A	p.Gly37Arg	p.G37R	ENST00000308874		37	Ggg/Agg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0034071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	76	256	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0034071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	103	612	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12044449	12044466	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCAATTTTCTTGCAGAAA	TCAATTTTCTTGCAGAAA	-			P-0034071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	39	200	0	ENST00000353533.5:c.1087-15_1089del		p.X363_splice	ENST00000353533	NM_003010.3	363																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0027600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	409	614	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0027600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	527	718	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
TET1	80312	MSKCC	GRCh37	10	70406211	70406211	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	395	695	0	ENST00000373644.4:c.3725T>A	p.Ile1242Lys	p.I1242K	ENST00000373644	NM_030625.2	1242	aTa/aAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991914	72991914	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	289	535	0	ENST00000268489.5:c.2131C>G	p.Pro711Ala	p.P711A	ENST00000268489	NM_006885.3	711	Ccc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0033961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	408	668	19	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519972		P-0033961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	330	578	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112891078	112891078	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	158	525	0	ENST00000351677.2:c.412C>T	p.Arg138Ter	p.R138*	ENST00000351677	NM_002834.3	138	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	13	362	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976745	2976745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	18	768	2	ENST00000396946.4:c.1267C>T	p.Arg423Trp	p.R423W	ENST00000396946	NM_032415.4	423	Cgg/Tgg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225422419	225422419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	28	635	0	ENST00000264414.4:c.221A>G	p.Tyr74Cys	p.Y74C	ENST00000264414	NM_003590.4	74	tAc/tGc																																																																															
SESN1	27244	MSKCC	GRCh37	6	109321818	109321818	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	151	725	0	ENST00000436639.2:c.605A>T	p.His202Leu	p.H202L	ENST00000436639	NM_014454.2	202	cAt/cTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0033987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	64	605	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111491	8111492	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	113	748	0	ENST00000346208.3:c.978dup	p.Leu327ThrfsTer25	p.L327Tfs*25	ENST00000346208		326	aca/acAa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0033989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	110	707	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630794	187630794	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	161	842	0	ENST00000441802.2:c.188T>G	p.Ile63Ser	p.I63S	ENST00000441802	NM_005245.3	63	aTt/aGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	230	621	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0033991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	178	479	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710518	114710518	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0033991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	157	279	0	ENST00000543371.1:c.3G>A	p.Met1?	p.M1?	ENST00000543371	NM_001198531.1	1	atG/atA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088669	27088669	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	300	797	0	ENST00000324856.7:c.2281del	p.Gln761SerfsTer72	p.Q761Sfs*72	ENST00000324856	NM_006015.4	760	Ccc/cc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151849997	151849997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	119	368	0	ENST00000262189.6:c.12319G>A	p.Val4107Ile	p.V4107I	ENST00000262189	NM_170606.2	4107	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	104	385	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579346	7579346	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	237	708	0	ENST00000269305.4:c.341del	p.Leu114CysfsTer9	p.L114Cfs*9	ENST00000269305	NM_001126112.2	114	tTg/tg																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0033994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	67	467	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16021243	16021243	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	172	436	0	ENST00000268712.3:c.2014C>T	p.Arg672Ter	p.R672*	ENST00000268712	NM_006311.3	672	Cga/Tga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120483242	120483242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	116	489	0	ENST00000256646.2:c.3119G>T	p.Cys1040Phe	p.C1040F	ENST00000256646	NM_024408.3	1040	tGt/tTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29687589	29687589	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	110	718	0	ENST00000358273.4:c.8245G>T	p.Glu2749Ter	p.E2749*	ENST00000358273	NM_001042492.2	2749	Gaa/Taa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576431	67576431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	142	549	1	ENST00000274335.5:c.710G>A	p.Trp237Ter	p.W237*	ENST00000274335		237	tGg/tAg																																																																															
BRAF	673	MSKCC	GRCh37	7	140534492	140534492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	94	551	0	ENST00000288602.6:c.421C>G	p.Pro141Ala	p.P141A	ENST00000288602	NM_004333.4	141	Ccc/Gcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004985-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			400	11	563	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004985-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			307	15	621	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346222	89346222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004985-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			117	10	362	0	ENST00000301030.4:c.6728C>T	p.Pro2243Leu	p.P2243L	ENST00000301030	NM_001256183.1	2243	cCc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	184	372	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0033823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	123	490	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	37	328	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	92	494	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65349050	65349050	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	135	459	0	ENST00000342505.4:c.115A>G	p.Ile39Val	p.I39V	ENST00000342505	NM_002227.2	39	Atc/Gtc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111510	8111511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AATGGGGACCCTGTCTGCAATGCCTGTGGGCTCTACTACA			P-0033825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	91	467	0	ENST00000346208.3:c.998_1037dup	p.Leu347TrpfsTer18	p.L347Wfs*18	ENST00000346208		332	-/AATGGGGACCCTGTCTGCAATGCCTGTGGGCTCTACTACA																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0033958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	97	254	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0033958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	247	547	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	241	546	0	ENST00000369535.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caT																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675170	30675172	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0033958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	229	484	0	ENST00000376406.3:c.3073_3075delAAG	p.Lys1025del	p.K1025del	ENST00000376406	NM_014641.2	1025	AAG/-																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100645	8100645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	116	589	0	ENST00000346208.3:c.619G>A	p.Ala207Thr	p.A207T	ENST00000346208		207	Gcc/Acc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111884785	111884785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	211	434	1	ENST00000341259.2:c.874G>A	p.Glu292Lys	p.E292K	ENST00000341259	NM_005475.2	292	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112173601	112173601	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	137	315	0	ENST00000257430.4:c.2310del	p.Glu771LysfsTer6	p.E771Kfs*6	ENST00000257430	NM_000038.5	770	tcA/tc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0033792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	71	550	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0033792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	101	425	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249092	55249092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	51	611	0	ENST00000275493.2:c.2390G>C	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	tGc/tCc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	364595	364595	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	29	723	0	ENST00000262320.3:c.967C>T	p.Gln323Ter	p.Q323*	ENST00000262320	NM_003502.3	323	Cag/Tag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222867	5222867	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1193352037		P-0033792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	11	369	0	ENST00000357368.4:c.2936G>A	p.Arg979Gln	p.R979Q	ENST00000357368	NM_002850.3	979	cGa/cAa																																																																															
AURKA	6790	MSKCC	GRCh37	20	54956508	54956508	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	21	369	0	ENST00000312783.6:c.686A>T	p.Asp229Val	p.D229V	ENST00000312783	NM_198436.1	229	gAt/gTt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	432289	432289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	119	481	0	ENST00000399788.2:c.2234G>A	p.Arg745His	p.R745H	ENST00000399788	NM_001042603.1	745	cGt/cAt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	360011	360011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	155	663	1	ENST00000262320.3:c.1078G>A	p.Val360Met	p.V360M	ENST00000262320	NM_003502.3	360	Gtg/Atg																																																																															
AKT2	208	MSKCC	GRCh37	19	40741245	40741245	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	122	580	0	ENST00000392038.2:c.1188del	p.Ser398AlafsTer177	p.S398Afs*177	ENST00000392038	NM_001626.4	396	ggG/gg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255818	16255818	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	153	284	0	ENST00000375759.3:c.3084del	p.Leu1029CysfsTer2	p.L1029Cfs*2	ENST00000375759	NM_015001.2	1028	aTt/at																																																																															
AKT2	208	MSKCC	GRCh37	19	40741252	40741252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	126	567	1	ENST00000392038.2:c.1181G>T	p.Gly394Val	p.G394V	ENST00000392038	NM_001626.4	394	gGt/gTt																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156741	20156787	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTGATGGTTTAAAAAAAAGAAAAGGAGGTAAATGACATTAATTATCT	CTGATGGTTTAAAAAAAAGAAAAGGAGGTAAATGACATTAATTATCT	-			P-0033794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	70	463	0	ENST00000379607.5:c.17-47_17-1del		p.X6_splice	ENST00000379607	NM_001412.3	6																																																																																
CDH1	999	MSKCC	GRCh37	16	68842658	68842659	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	310	618	1	ENST00000261769.5:c.595dupA	p.Thr199AsnfsTer10	p.T199Nfs*10	ENST00000261769	NM_004360.3	198	-/A																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	59	376	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	114	520	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864663	68864663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	92	197	0	ENST00000288368.4:c.34G>A	p.Glu12Lys	p.E12K	ENST00000288368	NM_024870.2	12	Gag/Aag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2207627	2207627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	210	532	1	ENST00000398665.3:c.911C>T	p.Ser304Leu	p.S304L	ENST00000398665	NM_032482.2	304	tCg/tTg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123247554	123247554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	186	619	0	ENST00000358487.5:c.1937G>T	p.Gly646Val	p.G646V	ENST00000358487	NM_000141.4	646	gGa/gTa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900956	3900956	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	182	550	0	ENST00000262367.5:c.140A>G	p.Asn47Ser	p.N47S	ENST00000262367	NM_004380.2	47	aAt/aGt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532484	63532484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	101	643	0	ENST00000307078.5:c.2095G>A	p.Glu699Lys	p.E699K	ENST00000307078	NM_004655.3	699	Gag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144848	11144848	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	177	411	0	ENST00000344626.4:c.3923G>T	p.Arg1308Leu	p.R1308L	ENST00000344626	NM_003072.3	1308	cGg/cTg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148511132	148511133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	79	391	0	ENST00000320356.2:c.1769dup	p.Cys590TrpfsTer8	p.C590Wfs*8	ENST00000320356	NM_004456.4	590	tgt/tgGt																																																																															
TEK	7010	MSKCC	GRCh37	9	27212732	27212732	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	287	624	2	ENST00000380036.4:c.2714C>A	p.Ala905Glu	p.A905E	ENST00000380036	NM_000459.3	905	gCg/gAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412155	63412155	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	440	857	0	ENST00000330258.3:c.1012del	p.Asp338ThrfsTer3	p.D338Tfs*3	ENST00000330258	NM_152424.3	338	Gac/ac																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0033807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	110	580	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0033807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	187	604	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0033807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	59	296	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175789	112175789	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	69	266	0	ENST00000257430.4:c.4501del	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1500	Ttt/tt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593496	48593496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	113	256	1	ENST00000342988.3:c.1247G>A	p.Arg416Lys	p.R416K	ENST00000342988	NM_005359.5	416	aGa/aAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0033815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	148	418	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	59	638	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984856	72984856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	101	310	0	ENST00000268489.5:c.2728G>A	p.Glu910Lys	p.E910K	ENST00000268489	NM_006885.3	910	Gag/Aag																																																																															
RAD52	5893	MSKCC	GRCh37	12	1040454	1040454	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	93	651	0	ENST00000358495.3:c.118C>G	p.Gln40Glu	p.Q40E	ENST00000358495	NM_134424.2	40	Cag/Gag																																																																															
RB1	5925	MSKCC	GRCh37	13	48936995	48936995	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587778842		P-0033832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	79	409	0	ENST00000267163.4:c.763C>T	p.Arg255Ter	p.R255*	ENST00000267163	NM_000321.2	255	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	484	770	0	ENST00000269305.4:c.745del	p.Arg249GlyfsTer96	p.R249Gfs*96	ENST00000269305	NM_001126112.2	249	Agg/gg																																																																															
APC	324	MSKCC	GRCh37	5	112175256	112175256	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	61	267	0	ENST00000257430.4:c.3966del	p.Val1323PhefsTer92	p.V1323Ffs*92	ENST00000257430	NM_000038.5	1322	gAa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	57	542	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0033926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	32	314	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925432	114925432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	67	587	0	ENST00000543371.1:c.1510C>T	p.Pro504Ser	p.P504S	ENST00000543371	NM_001198531.1	504	Ccc/Tcc																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944926	31944926	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	21	298	0	ENST00000340398.3:c.175G>T	p.Glu59Ter	p.E59*	ENST00000340398	NM_001013699.2	59	Gag/Tag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724720	43724720	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	63	760	0	ENST00000382044.4:c.3347G>T	p.Gly1116Val	p.G1116V	ENST00000382044	NM_001141980.1	1116	gGg/gTg																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72873703	72873703	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0033926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	45	325	0	ENST00000325599.8:c.600-1G>T		p.X200_splice	ENST00000325599	NM_018130.2	200																																																																																
TGFBR1	7046	MSKCC	GRCh37	9	101907069	101907069	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	41	413	0	ENST00000374994.4:c.1029G>T	p.Lys343Asn	p.K343N	ENST00000374994	NM_004612.2	343	aaG/aaT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47035979	47035979	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	55	638	0	ENST00000329236.7:c.426C>A	p.Cys142Ter	p.C142*	ENST00000329236	NM_001204466.1	142	tgC/tgA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410427	63410427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	57	646	0	ENST00000330258.3:c.2740G>T	p.Gly914Cys	p.G914C	ENST00000330258	NM_152424.3	914	Ggc/Tgc																																																																															
ATRX	546	MSKCC	GRCh37	X	76938909	76938909	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	64	706	1	ENST00000373344.5:c.1839T>A	p.Asp613Glu	p.D613E	ENST00000373344	NM_000489.3	613	gaT/gaA																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0033931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	108	599	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
MED12	9968	MSKCC	GRCh37	X	70357768	70357768	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	111	726	0	ENST00000374080.3:c.6019G>T	p.Gly2007Ter	p.G2007*	ENST00000374080		2007	Gga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	170	589	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TSC1	7248	MSKCC	GRCh37	9	135796754	135796754	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	102	412	1	ENST00000298552.3:c.733C>T	p.Arg245Ter	p.R245*	ENST00000298552	NM_001162426.1	245	Cga/Tga																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64128044	64128044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	38	779	0	ENST00000334205.4:c.442G>A	p.Ala148Thr	p.A148T	ENST00000334205	NM_003942.2	148	Gcc/Acc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438266	49438266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	166	656	1	ENST00000301067.7:c.5003G>T	p.Gly1668Val	p.G1668V	ENST00000301067	NM_003482.3	1668	gGc/gTc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291070	10291070	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	125	676	0	ENST00000340748.4:c.401A>T	p.Lys134Ile	p.K134I	ENST00000340748		134	aAa/aTa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89462377	89462377	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	140	613	0	ENST00000336596.2:c.1849G>C	p.Asp617His	p.D617H	ENST00000336596	NM_005233.5	617	Gat/Cat																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515439	149515439	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs148853962		P-0033939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	40	455	0	ENST00000261799.4:c.43G>A	p.Glu15Lys	p.E15K	ENST00000261799	NM_002609.3	15	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0033974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	29	560	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207037	1207037	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	24	678	0	ENST00000326873.7:c.127del	p.Ala43ProfsTer8	p.A43Pfs*8	ENST00000326873	NM_000455.4	42	cGg/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	347	416	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348239	348239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	261	509	0	ENST00000262320.3:c.1267G>A	p.Glu423Lys	p.E423K	ENST00000262320	NM_003502.3	423	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023471	27023471	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	229	210	0	ENST00000324856.7:c.577G>T	p.Glu193Ter	p.E193*	ENST00000324856	NM_006015.4	193	Gag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141551	11141551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	72	411	0	ENST00000344626.4:c.3528C>A	p.Ser1176Arg	p.S1176R	ENST00000344626	NM_003072.3	1176	agC/agA																																																																															
MTOR	2475	MSKCC	GRCh37	1	11307684	11307684	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	217	313	0	ENST00000361445.4:c.1223C>G	p.Thr408Arg	p.T408R	ENST00000361445	NM_004958.3	408	aCa/aGa																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72163744	72163744	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	212	504	0	ENST00000357731.5:c.614C>A	p.Ala205Glu	p.A205E	ENST00000357731	NM_173808.2	205	gCg/gAg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112511	115112511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	207	448	0	ENST00000257566.3:c.1229C>T	p.Pro410Leu	p.P410L	ENST00000257566	NM_016569.3	410	cCc/cTc																																																																															
RB1	5925	MSKCC	GRCh37	13	48955434	48955434	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	156	296	0	ENST00000267163.4:c.1551del	p.Leu518Ter	p.L518*	ENST00000267163	NM_000321.2	517	aTt/at																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226893	2226893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	57	92	0	ENST00000398665.3:c.4373C>A	p.Ala1458Asp	p.A1458D	ENST00000398665	NM_032482.2	1458	gCc/gAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602473	10602473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	179	315	0	ENST00000171111.5:c.1105G>A	p.Val369Met	p.V369M	ENST00000171111	NM_203500.1	369	Gtg/Atg																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881699	111881699	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	101	376	0	ENST00000393256.3:c.377A>T	p.His126Leu	p.H126L	ENST00000393256	NM_006538.4	126	cAc/cTc																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434135	12434135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	33	257	0	ENST00000287820.6:c.503G>A	p.Arg168Lys	p.R168K	ENST00000287820	NM_015869.4	168	aGa/aAa																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197229	26197229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	137	258	0	ENST00000356476.2:c.250C>T	p.Arg84Cys	p.R84C	ENST00000356476		84	Cgt/Tgt																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839876	27839876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	96	295	0	ENST00000328488.2:c.218G>T	p.Arg73Leu	p.R73L	ENST00000328488	NM_003533.2	73	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	23	284	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RB1	5925	MSKCC	GRCh37	13	49047527	49047527	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0033978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	13	188	0	ENST00000267163.4:c.2520+1G>T		p.X840_splice	ENST00000267163	NM_000321.2	840																																																																																
JAK2	3717	MSKCC	GRCh37	9	5089672	5089672	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0033978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	15	130	0	ENST00000381652.3:c.2572-2A>T		p.X858_splice	ENST00000381652	NM_004972.3	858																																																																																
JAK3	3718	MSKCC	GRCh37	19	17945969	17945969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758959409		P-0033981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	12	550	0	ENST00000458235.1:c.1970G>A	p.Arg657Gln	p.R657Q	ENST00000458235	NM_000215.3	657	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023501	27023502	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	133	212	0	ENST00000324856.7:c.608dup	p.His203GlnfsTer197	p.H203Qfs*197	ENST00000324856	NM_006015.4	203	cac/cAac																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463509	25463509	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0033981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	10	311	0	ENST00000264709.3:c.2173G>A	p.Glu725Lys	p.E725K	ENST00000264709	NM_175629.2	725	Gag/Aag																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514631	103514631	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	21	229	0	ENST00000355739.4:c.1132G>C	p.Val378Leu	p.V378L	ENST00000355739	NM_000123.3	378	Gta/Cta																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368299	45368299	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	25	284	0	ENST00000262160.6:c.1303C>G	p.Pro435Ala	p.P435A	ENST00000262160	NM_005901.5	435	Cct/Gct																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919027	50919027	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775310798		P-0033981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	10	422	0	ENST00000440232.2:c.2764G>A	p.Val922Ile	p.V922I	ENST00000440232	NM_002691.3	922	Gtc/Atc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027721-T06-IM6									Unknown	SOMATIC				MSK-IMPACT			303	57	503	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0032953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	157	586	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0032953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	129	571	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584514	48584514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	19	347	2	ENST00000342988.3:c.692delG	p.Gly231AlafsTer10	p.G231Afs*10	ENST00000342988	NM_005359.5	229	ctG/ct																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806119	1806119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	55	716	1	ENST00000260795.2:c.1138G>A	p.Gly380Arg	p.G380R	ENST00000260795		380	Ggg/Agg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781417	3781417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	53	445	0	ENST00000262367.5:c.4948G>A	p.Val1650Ile	p.V1650I	ENST00000262367	NM_004380.2	1650	Gtc/Atc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720733	89720734	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0032953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	12	158	0	ENST00000371953.3:c.885_886del	p.Cys296Ter	p.C296*	ENST00000371953	NM_000314.4	295	cTA/c																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023290	27023290	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	20	53	0	ENST00000324856.7:c.400del	p.Ala134ArgfsTer98	p.A134Rfs*98	ENST00000324856	NM_006015.4	132	gtG/gt																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998128	169998128	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs753143066		P-0032953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	141	578	3	ENST00000295797.4:c.826del	p.Thr276GlnfsTer7	p.T276Qfs*7	ENST00000295797	NM_002740.5	273	ttA/tt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348964	89348964	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	162	659	0	ENST00000301030.4:c.3986del	p.Pro1329LeufsTer16	p.P1329Lfs*16	ENST00000301030	NM_001256183.1	1329	cCt/ct																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46282157	46282157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	64	279	0	ENST00000371998.3:c.4271G>A	p.Cys1424Tyr	p.C1424Y	ENST00000371998		1424	tGc/tAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436278	110436278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	14	121	1	ENST00000375856.3:c.2123C>T	p.Ala708Val	p.A708V	ENST00000375856	NM_003749.2	708	gCg/gTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115848	8115849	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0032953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	122	502	0	ENST00000346208.3:c.1197_1198del	p.Met400ValfsTer106	p.M400Vfs*106	ENST00000346208		398	agACac/agac																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500591	99500591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	80	350	0	ENST00000268035.6:c.4024G>A	p.Glu1342Lys	p.E1342K	ENST00000268035	NM_000875.3	1342	Gag/Aag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347447	89347447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	110	474	2	ENST00000301030.4:c.5503C>A	p.Leu1835Met	p.L1835M	ENST00000301030	NM_001256183.1	1835	Ctg/Atg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250417	10250417	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	24	412	0	ENST00000340748.4:c.3835G>C	p.Val1279Leu	p.V1279L	ENST00000340748		1279	Gtc/Ctc																																																																															
SRC	6714	MSKCC	GRCh37	20	36026108	36026108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	139	647	0	ENST00000358208.4:c.710C>T	p.Ala237Val	p.A237V	ENST00000358208		237	gCc/gTc																																																																															
MYD88	4615	MSKCC	GRCh37	3	38181471	38181471	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	104	473	0	ENST00000396334.3:c.484A>G	p.Thr162Ala	p.T162A	ENST00000396334	NM_002468.4	162	Aca/Gca																																																																															
TP63	8626	MSKCC	GRCh37	3	189456492	189456492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	118	389	0	ENST00000264731.3:c.253G>A	p.Ala85Thr	p.A85T	ENST00000264731	NM_003722.4	85	Gcg/Acg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710999	117710999	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	49	190	0	ENST00000368508.3:c.1273T>C	p.Tyr425His	p.Y425H	ENST00000368508	NM_002944.2	425	Tac/Cac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0033785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	24	422	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539564	187539564	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	15	534	1	ENST00000441802.2:c.8176C>T	p.Arg2726Ter	p.R2726*	ENST00000441802	NM_005245.3	2726	Cga/Tga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188977	32188977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	58	832	1	ENST00000375023.3:c.577C>T	p.Arg193Cys	p.R193C	ENST00000375023	NM_004557.3	193	Cgt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610525	10610525	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	66	948	0	ENST00000171111.5:c.185A>C	p.Gln62Pro	p.Q62P	ENST00000171111	NM_203500.1	62	cAg/cCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	75	558	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	77	507	0	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	59	410	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	33	342	0	ENST00000244661.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000244661	NM_003537.3	106	Gag/Cag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	83	474	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																															
INHA	3623	MSKCC	GRCh37	2	220440078	220440078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	47	860	0	ENST00000243786.2:c.931C>T	p.Pro311Ser	p.P311S	ENST00000243786	NM_002191.3	311	Ccc/Tcc																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22160206	22160206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	38	337	0	ENST00000215832.6:c.425C>T	p.Ser142Leu	p.S142L	ENST00000215832	NM_002745.4	142	tCa/tTa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061226	38061226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	45	465	1	ENST00000250448.2:c.763G>A	p.Glu255Lys	p.E255K	ENST00000250448	NM_004496.3	255	Gag/Aag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638363	176638363	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	92	642	0	ENST00000439151.2:c.2963C>G	p.Ser988Cys	p.S988C	ENST00000439151	NM_022455.4	988	tCt/tGt																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200485	67200485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	65	599	0	ENST00000312629.5:c.679C>T	p.His227Tyr	p.H227Y	ENST00000312629	NM_003952.2	227	Cac/Tac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344472	118344472	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	20	254	0	ENST00000534358.1:c.2598G>C	p.Lys866Asn	p.K866N	ENST00000534358	NM_005933.3	866	aaG/aaC																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344704	118344704	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	30	383	0	ENST00000534358.1:c.2830G>C	p.Asp944His	p.D944H	ENST00000534358	NM_005933.3	944	Gat/Cat																																																																															
KDM5A	5927	MSKCC	GRCh37	12	431671	431671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	47	613	0	ENST00000399788.2:c.2338C>T	p.Leu780Phe	p.L780F	ENST00000399788	NM_001042603.1	780	Ctc/Ttc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144853	11144853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	26	503	1	ENST00000344626.4:c.3928G>A	p.Glu1310Lys	p.E1310K	ENST00000344626	NM_003072.3	1310	Gag/Aag																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719187	61719187	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	64	365	0	ENST00000401558.2:c.1870G>C	p.Asp624His	p.D624H	ENST00000401558	NM_003400.3	624	Gat/Cat																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198288623	198288623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	89	594	0	ENST00000335508.6:c.104C>G	p.Ser35Cys	p.S35C	ENST00000335508	NM_012433.2	35	tCt/tGt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166754	32166754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	84	745	1	ENST00000375023.3:c.4484C>T	p.Ser1495Leu	p.S1495L	ENST00000375023	NM_004557.3	1495	tCa/tTa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117632274	117632274	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	50	398	0	ENST00000368508.3:c.6142G>T	p.Gly2048Cys	p.G2048C	ENST00000368508	NM_002944.2	2048	Ggt/Tgt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949801	151949801	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0033837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	61	296	0	ENST00000262189.6:c.1300-1G>C		p.X434_splice	ENST00000262189	NM_170606.2	434																																																																																
CD274	29126	MSKCC	GRCh37	9	5456116	5456116	+	start_lost	Translation_Start_Site	SNP	G	G	A	rs111401207		P-0033837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	58	349	1	ENST00000381577.3:c.3G>A	p.Met1?	p.M1?	ENST00000381577	NM_014143.3	1	atG/atA																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15821840	15821840	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	43	260	0	ENST00000307771.7:c.233G>C	p.Arg78Thr	p.R78T	ENST00000307771	NM_005089.3	78	aGa/aCa																																																																															
IL10	3586	MSKCC	GRCh37	1	206943239	206943239	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0033841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	162	302	0	ENST00000423557.1:c.379C>G	p.His127Asp	p.H127D	ENST00000423557	NM_000572.2	127	Cat/Gat																																																																															
TET1	80312	MSKCC	GRCh37	10	70450669	70450669	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs146039331		P-0033841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	43	394	0	ENST00000373644.4:c.5509G>T	p.Ala1837Ser	p.A1837S	ENST00000373644	NM_030625.2	1837	Gct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	134	385	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858233	9858233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	57	468	0	ENST00000330684.3:c.3168G>A	p.Met1056Ile	p.M1056I	ENST00000330684	NM_001134407.1	1056	atG/atA																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15965470	15965470	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	104	387	0	ENST00000268712.3:c.5336A>G	p.Asn1779Ser	p.N1779S	ENST00000268712	NM_006311.3	1779	aAt/aGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29533299	29533299	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0033841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	55	314	0	ENST00000358273.4:c.1302T>A	p.Cys434Ter	p.C434*	ENST00000358273	NM_001042492.2	434	tgT/tgA																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807309	1807309	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	145	551	0	ENST00000260795.2:c.1558T>A	p.Ser520Thr	p.S520T	ENST00000260795		520	Tcg/Acg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520214	176520214	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	137	664	0	ENST00000292408.4:c.1133T>A	p.Leu378Gln	p.L378Q	ENST00000292408	NM_213647.1	378	cTg/cAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411612	63411612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	137	680	0	ENST00000330258.3:c.1555C>A	p.Pro519Thr	p.P519T	ENST00000330258	NM_152424.3	519	Cca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0033751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	20	410	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	13	529	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0033786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	63	641	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0033786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	48	629	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242511	55242511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0033786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	23	285	0	ENST00000275493.2:c.2281G>T	p.Asp761Tyr	p.D761Y	ENST00000275493	NM_005228.3	761	Gat/Tat																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39321381	39321381	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0033786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	68	471	0	ENST00000373001.3:c.640del	p.Ser214AlafsTer4	p.S214Afs*4	ENST00000373001	NM_022157.3	214	Agc/gc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523315	9523315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	56	577	0	ENST00000353224.5:c.1922C>A	p.Pro641His	p.P641H	ENST00000353224	NM_177990.2	641	cCc/cAc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42852430	42852430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	62	637	0	ENST00000398585.3:c.656G>C	p.Arg219Pro	p.R219P	ENST00000398585	NM_001135099.1	219	cGg/cCg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091779	29091779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	64	514	0	ENST00000328354.6:c.1178C>T	p.Pro393Leu	p.P393L	ENST00000328354	NM_007194.3	393	cCt/cTt																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127951915	127951925	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGCTCACCTT	GGGCTCACCTT	-			P-0033786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	88	553	0	ENST00000373547.4:c.73_75+8del		p.X25_splice	ENST00000373547	NM_002721.4	25																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	49	490	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584787	48584787	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	13	550	0	ENST00000342988.3:c.865C>T	p.Gln289Ter	p.Q289*	ENST00000342988	NM_005359.5	289	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	32	853	0	ENST00000269305.4:c.737T>A	p.Met246Lys	p.M246K	ENST00000269305	NM_001126112.2	246	aTg/aAg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984364	201984365	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	36	703	0	ENST00000359651.3:c.1030dup	p.Arg344ProfsTer127	p.R344Pfs*127	ENST00000359651		343	-/C																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43773136	43773136	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	22	769	0	ENST00000382044.4:c.456A>T	p.Glu152Asp	p.E152D	ENST00000382044	NM_001141980.1	152	gaA/gaT																																																																															
NF1	4763	MSKCC	GRCh37	17	29664465	29664465	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	14	717	0	ENST00000358273.4:c.6507A>T	p.Lys2169Asn	p.K2169N	ENST00000358273	NM_001042492.2	2169	aaA/aaT																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291058	10291058	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	16	716	0	ENST00000340748.4:c.413C>G	p.Pro138Arg	p.P138R	ENST00000340748		138	cCc/cGc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505414	25505414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	16	729	0	ENST00000264709.3:c.344C>T	p.Pro115Leu	p.P115L	ENST00000264709	NM_175629.2	115	cCa/cTa																																																																															
ALK	238	MSKCC	GRCh37	2	29473997	29473998	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	15	1005	0	ENST00000389048.3:c.2177_2178delinsAT	p.Trp726Tyr	p.W726Y	ENST00000389048	NM_004304.4	726	tGG/tAT																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138400821	138400822	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	12	384	3	ENST00000289153.2:c.2491_2492delinsTT	p.Gly831Phe	p.G831F	ENST00000289153	NM_006219.2	831	GGt/TTt																																																																															
KDR	3791	MSKCC	GRCh37	4	55980379	55980379	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	20	502	0	ENST00000263923.4:c.712G>T	p.Val238Phe	p.V238F	ENST00000263923	NM_002253.2	238	Gtt/Ttt																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99809063	99809063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	23	199	0	ENST00000280892.6:c.322G>T	p.Gly108Cys	p.G108C	ENST00000280892	NM_001130678.1	108	Ggc/Tgc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143045815	143045815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	26	690	1	ENST00000262992.4:c.1819C>T	p.Leu607Phe	p.L607F	ENST00000262992	NM_001101669.1	607	Ctt/Ttt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449799	8449799	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	24	704	0	ENST00000356435.5:c.3914C>G	p.Pro1305Arg	p.P1305R	ENST00000356435		1305	cCg/cGg																																																																															
TEK	7010	MSKCC	GRCh37	9	27190572	27190572	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	29	902	1	ENST00000380036.4:c.1373A>T	p.His458Leu	p.H458L	ENST00000380036	NM_000459.3	458	cAt/cTt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260875	16260875	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	331	364	0	ENST00000375759.3:c.8140A>T	p.Thr2714Ser	p.T2714S	ENST00000375759	NM_015001.2	2714	Acg/Tcg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175996735	175996735	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	695	372	0	ENST00000367669.3:c.1702A>G	p.Arg568Gly	p.R568G	ENST00000367669	NM_022457.5	568	Aga/Gga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375575	118375575	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	199	207	0	ENST00000534358.1:c.8968G>T	p.Gly2990Cys	p.G2990C	ENST00000534358	NM_005933.3	2990	Ggc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428422	49428422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	369	538	0	ENST00000301067.7:c.10383G>T	p.Arg3461Ser	p.R3461S	ENST00000301067	NM_003482.3	3461	agG/agT																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478817	56478817	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	356	582	0	ENST00000267101.3:c.273G>C	p.Met91Ile	p.M91I	ENST00000267101	NM_001982.3	91	atG/atC																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	145	392	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
POLE	5426	MSKCC	GRCh37	12	133226451	133226451	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	97	358	0	ENST00000320574.5:c.3607G>C	p.Asp1203His	p.D1203H	ENST00000320574	NM_006231.2	1203	Gac/Cac																																																																															
RB1	5925	MSKCC	GRCh37	13	48951140	48951141	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AT			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	192	314	0	ENST00000267163.4:c.1302_1303delinsAT	p.Gly435Ter	p.G435*	ENST00000267163	NM_000321.2	434	gtGGga/gtATga																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986947	36986947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	263	442	0	ENST00000354822.5:c.742C>T	p.Arg248Cys	p.R248C	ENST00000354822	NM_001079668.2	248	Cgc/Tgc																																																																															
AKT1	207	MSKCC	GRCh37	14	105242099	105242099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	515	581	1	ENST00000349310.3:c.325G>A	p.Gly109Ser	p.G109S	ENST00000349310	NM_001014432.1	109	Ggc/Agc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472469	88472469	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	149	457	0	ENST00000360948.2:c.2086G>C	p.Gly696Arg	p.G696R	ENST00000360948	NM_001012338.2	696	Ggg/Cgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	329	523	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59876531	59876531	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	305	415	0	ENST00000259008.2:c.1270A>T	p.Ser424Cys	p.S424C	ENST00000259008	NM_032043.2	424	Agt/Tgt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216495	2216495	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	306	593	0	ENST00000398665.3:c.2139G>C	p.Met713Ile	p.M713I	ENST00000398665	NM_032482.2	713	atG/atC																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097641	11097641	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	381	654	0	ENST00000344626.4:c.821G>T	p.Gly274Val	p.G274V	ENST00000344626	NM_003072.3	274	gGc/gTc																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17382451	17382451	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	355	503	0	ENST00000359435.4:c.331G>T	p.Glu111Ter	p.E111*	ENST00000359435	NM_001033549.1	111	Gag/Tag																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735395	204735395	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	73	294	0	ENST00000302823.3:c.196del	p.Ala66ProfsTer6	p.A66Pfs*6	ENST00000302823	NM_005214.4	66	Gcc/cc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660381	227660381	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	46	342	0	ENST00000305123.5:c.3074G>C	p.Ser1025Thr	p.S1025T	ENST00000305123	NM_005544.2	1025	aGc/aCc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793290	242793290	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143359677		P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	162	589	0	ENST00000334409.5:c.787G>A	p.Ala263Thr	p.A263T	ENST00000334409	NM_005018.2	263	Gcc/Acc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267198	41267198	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	269	362	0	ENST00000349496.5:c.782A>G	p.Asn261Ser	p.N261S	ENST00000349496	NM_001904.3	261	aAc/aGc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164198	47164198	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	195	342	0	ENST00000409792.3:c.1928A>G	p.His643Arg	p.H643R	ENST00000409792	NM_014159.6	643	cAt/cGt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021817	71021817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	154	193	0	ENST00000318789.4:c.1541G>T	p.Arg514Leu	p.R514L	ENST00000318789	NM_032682.5	514	cGt/cTt																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665360	138665360	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	88	577	0	ENST00000330315.3:c.205G>C	p.Glu69Gln	p.E69Q	ENST00000330315	NM_023067.3	69	Gag/Cag																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170015099	170015099	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	176	480	0	ENST00000295797.4:c.1505A>T	p.Lys502Met	p.K502M	ENST00000295797	NM_002740.5	502	aAg/aTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55948138	55948138	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	128	367	0	ENST00000263923.4:c.3833T>A	p.Leu1278Ter	p.L1278*	ENST00000263923	NM_002253.2	1278	tTa/tAa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356150	66356150	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	274	432	0	ENST00000273854.3:c.1347C>A	p.Asp449Glu	p.D449E	ENST00000273854	NM_004439.5	449	gaC/gaA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542826	187542826	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	215	376	0	ENST00000441802.2:c.4914A>T	p.Lys1638Asn	p.K1638N	ENST00000441802	NM_005245.3	1638	aaA/aaT																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683656	162683656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	142	376	0	ENST00000366898.1:c.313G>C	p.Val105Leu	p.V105L	ENST00000366898	NM_004562.2	105	Gtg/Ctg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289853	15289854	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	T			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	165	593	0	ENST00000263388.2:c.3700_3701delinsA	p.Cys1234IlefsTer38	p.C1234Ifs*38	ENST00000263388	NM_000435.2	1234	TGt/At																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916143	9916143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	35	415	0	ENST00000330684.3:c.2146G>A	p.Ala716Thr	p.A716T	ENST00000330684	NM_001134407.1	716	Gcc/Acc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589223	67589225	+	inframe_deletion	In_Frame_Del	DEL	TAA	TAA	-			P-0033763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	78	249	0	ENST00000274335.5:c.1214_1216del	p.Ile405del	p.I405del	ENST00000274335		404	tTAAta/tta																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061357	38061358	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGTTCTGCC			P-0033763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	148	473	0	ENST00000250448.2:c.623_631dup	p.Arg208_Asn210dup	p.R208_N210dup	ENST00000250448	NM_004496.3	208	cag/cGGCAGAACCag																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	168	643	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108163375	108163375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	39	539	0	ENST00000278616.4:c.4466G>A	p.Arg1489His	p.R1489H	ENST00000278616	NM_000051.3	1489	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	97	261	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	112	328	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436009	110436009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	152	538	1	ENST00000375856.3:c.2392G>A	p.Val798Ile	p.V798I	ENST00000375856	NM_003749.2	798	Gtt/Att																																																																															
RET	5979	MSKCC	GRCh37	10	43601863	43601863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	145	488	1	ENST00000355710.3:c.907G>A	p.Val303Met	p.V303M	ENST00000355710	NM_020975.4	303	Gtg/Atg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246482	105246482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	111	472	1	ENST00000349310.3:c.118G>A	p.Glu40Lys	p.E40K	ENST00000349310	NM_001014432.1	40	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	126	334	1	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	142	169	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																															
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	73	224	1	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	146	470	1	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056427	26056427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	101	307	0	ENST00000343677.2:c.230A>G	p.Asn77Ser	p.N77S	ENST00000343677	NM_005319.3	77	aAc/aGc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	197	564	1	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294078	1294078	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	175	709	0	ENST00000310581.5:c.923del	p.Pro308HisfsTer43	p.P308Hfs*43	ENST00000310581	NM_198253.2	308	cCa/ca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255883	16255883	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	96	309	1	ENST00000375759.3:c.3154delA	p.Ile1052SerfsTer40	p.I1052Sfs*40	ENST00000375759	NM_015001.2	1050	Aaa/aa																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453398	40453399	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs773909918		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	96	626	2	ENST00000345506.4:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000345506	NM_003152.3	365	-/C																																																																															
MTOR	2475	MSKCC	GRCh37	1	11264661	11264661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	45	501	0	ENST00000361445.4:c.3901C>T	p.Arg1301Cys	p.R1301C	ENST00000361445	NM_004958.3	1301	Cgc/Tgc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	160	382	1	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																															
KDR	3791	MSKCC	GRCh37	4	55984813	55984813	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200544155		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	151	403	0	ENST00000263923.4:c.316C>T	p.Arg106Trp	p.R106W	ENST00000263923	NM_002253.2	106	Cgg/Tgg																																																																															
SYK	6850	MSKCC	GRCh37	9	93606273	93606273	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	167	505	2	ENST00000375746.1:c.98delG	p.Gly33AlafsTer2	p.G33Afs*2	ENST00000375746	NM_001174167.1	31	caG/ca																																																																															
ATM	472	MSKCC	GRCh37	11	108224583	108224583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	81	268	0	ENST00000278616.4:c.8762C>T	p.Thr2921Met	p.T2921M	ENST00000278616	NM_000051.3	2921	aCg/aTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7125296	7125296	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	276	424	0	ENST00000302850.5:c.3256G>A	p.Val1086Met	p.V1086M	ENST00000302850	NM_000208.2	1086	Gtg/Atg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971080	21971080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	115	269	0	ENST00000304494.5:c.278C>T	p.Thr93Met	p.T93M	ENST00000304494	NM_000077.4	93	aCg/aTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	242	476	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	187	640	1	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532556	63532556	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	183	568	1	ENST00000307078.5:c.2023delC	p.Arg675ValfsTer14	p.R675Vfs*14	ENST00000307078	NM_004655.3	675	Cgt/gt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	193	538	2	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424970	49424970	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783691		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	170	541	0	ENST00000301067.7:c.13518del	p.Ser4507AlafsTer12	p.S4507Afs*12	ENST00000301067	NM_003482.3	4506	ccC/cc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518197	187518197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	28	307	0	ENST00000441802.2:c.12497C>T	p.Ala4166Val	p.A4166V	ENST00000441802	NM_005245.3	4166	gCg/gTg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43707977	43707977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	190	592	0	ENST00000382044.4:c.4904G>A	p.Arg1635His	p.R1635H	ENST00000382044	NM_001141980.1	1635	cGc/cAc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646980	23646981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1060502767		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	163	571	1	ENST00000261584.4:c.886dup	p.Met296AsnfsTer7	p.M296Nfs*7	ENST00000261584	NM_024675.3	296	atg/aAtg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440712	56440712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	163	429	0	ENST00000407977.2:c.506C>T	p.Ala169Val	p.A169V	ENST00000407977		169	gCt/gTt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99181169	99181169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	161	430	0	ENST00000074304.5:c.2110C>T	p.Arg704Cys	p.R704C	ENST00000074304	NM_001134224.1	704	Cgc/Tgc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39617690	39617690	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141329274		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	132	343	1	ENST00000262039.4:c.1874C>T	p.Thr625Met	p.T625M	ENST00000262039	NM_002647.2	625	aCg/aTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905959	50905959	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201010746		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	197	550	1	ENST00000440232.2:c.931C>T	p.Arg311Cys	p.R311C	ENST00000440232	NM_002691.3	311	Cgc/Tgc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970951	21970951	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	40	424	0	ENST00000304494.5:c.407del	p.Gly136AlafsTer10	p.G136Afs*10	ENST00000304494	NM_000077.4	136	gGc/gc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9543659	9543659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	42	360	0	ENST00000353224.5:c.1495C>T	p.Arg499Trp	p.R499W	ENST00000353224	NM_177990.2	499	Cgg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140454004	140454004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	75	216	0	ENST00000288602.6:c.1724G>A	p.Arg575Lys	p.R575K	ENST00000288602	NM_004333.4	575	aGa/aAa																																																																															
SRC	6714	MSKCC	GRCh37	20	36012710	36012710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	27	50	0	ENST00000358208.4:c.154G>A	p.Ala52Thr	p.A52T	ENST00000358208		52	Gcg/Acg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257220	16257221	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	154	376	0	ENST00000375759.3:c.4490dup	p.Lys1498GlufsTer4	p.K1498Efs*4	ENST00000375759	NM_015001.2	1495	-/A																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984444	201984444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	118	314	1	ENST00000359651.3:c.1109G>A	p.Arg370Gln	p.R370Q	ENST00000359651		370	cGg/cAg																																																																															
PARP1	142	MSKCC	GRCh37	1	226552824	226552824	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	147	456	0	ENST00000366794.5:c.2537A>G	p.Gln846Arg	p.Q846R	ENST00000366794	NM_001618.3	846	cAg/cGg																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981838	101981838	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	141	460	0	ENST00000282441.5:c.259A>G	p.Arg87Gly	p.R87G	ENST00000282441	NM_001130145.2	87	Agg/Ggg																																																																															
ATM	472	MSKCC	GRCh37	11	108200974	108200974	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	108	337	0	ENST00000278616.4:c.7341G>T	p.Leu2447Phe	p.L2447F	ENST00000278616	NM_000051.3	2447	ttG/ttT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426652	49426652	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	100	296	0	ENST00000301067.7:c.11836C>T	p.Gln3946Ter	p.Q3946*	ENST00000301067	NM_003482.3	3946	Caa/Taa																																																																															
CDK8	1024	MSKCC	GRCh37	13	26970451	26970451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	29	111	0	ENST00000381527.3:c.820C>T	p.Pro274Ser	p.P274S	ENST00000381527	NM_001260.1	274	Cct/Tct																																																																															
RB1	5925	MSKCC	GRCh37	13	48923102	48923102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	93	289	0	ENST00000267163.4:c.550G>A	p.Glu184Lys	p.E184K	ENST00000267163	NM_000321.2	184	Gaa/Aaa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436575	110436575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	197	531	0	ENST00000375856.3:c.1826C>T	p.Ala609Val	p.A609V	ENST00000375856	NM_003749.2	609	gCg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817763	3817763	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	188	596	0	ENST00000262367.5:c.3208A>T	p.Thr1070Ser	p.T1070S	ENST00000262367	NM_004380.2	1070	Aca/Tca																																																																															
PALB2	79728	MSKCC	GRCh37	16	23632708	23632708	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	134	406	0	ENST00000261584.4:c.3088A>G	p.Thr1030Ala	p.T1030A	ENST00000261584	NM_024675.3	1030	Act/Gct																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89371689	89371691	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	204	523	0	ENST00000301030.4:c.149_151del	p.Glu50del	p.E50del	ENST00000301030	NM_001256183.1	50	gAGGtg/gtg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15967427	15967427	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1468999160		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	129	434	0	ENST00000268712.3:c.5176C>T	p.Arg1726Trp	p.R1726W	ENST00000268712	NM_006311.3	1726	Cgg/Tgg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37865601	37865601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	192	595	0	ENST00000269571.5:c.470G>A	p.Arg157Gln	p.R157Q	ENST00000269571		157	cGg/cAg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40369264	40369264	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	130	462	1	ENST00000293328.3:c.1294del	p.Ala432GlnfsTer4	p.A432Qfs*4	ENST00000293328	NM_012448.3	432	Gca/ca																																																																															
STAT3	6774	MSKCC	GRCh37	17	40500428	40500428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	124	375	0	ENST00000264657.5:c.107C>A	p.Pro36His	p.P36H	ENST00000264657	NM_139276.2	36	cCt/cAt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761412	59761415	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	161	385	0	ENST00000259008.2:c.2992_2995delAAGA	p.Lys998GlufsTer60	p.K998Efs*60	ENST00000259008	NM_032043.2	998	AAGAga/ga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022455	31022455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	72	220	0	ENST00000375687.4:c.1940C>T	p.Pro647Leu	p.P647L	ENST00000375687	NM_015338.5	647	cCg/cTg																																																																															
NF2	4771	MSKCC	GRCh37	22	30032757	30032757	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	102	334	0	ENST00000338641.4:c.132G>T	p.Lys44Asn	p.K44N	ENST00000338641	NM_000268.3	44	aaG/aaT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47139458	47139458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	141	441	0	ENST00000409792.3:c.5129G>A	p.Arg1710His	p.R1710H	ENST00000409792	NM_014159.6	1710	cGt/cAt																																																																															
TP63	8626	MSKCC	GRCh37	3	189582123	189582123	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	101	375	0	ENST00000264731.3:c.682A>G	p.Met228Val	p.M228V	ENST00000264731	NM_003722.4	228	Atg/Gtg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1955186	1955186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	149	485	0	ENST00000382891.5:c.2273G>A	p.Arg758His	p.R758H	ENST00000382891	NM_133335.3	758	cGc/cAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133529	55133529	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	107	387	0	ENST00000257290.5:c.833C>A	p.Pro278His	p.P278H	ENST00000257290	NM_006206.4	278	cCc/cAc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31401568	31401569	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	171	531	0	ENST00000344624.3:c.4094_4095dup	p.Pro1366SerfsTer24	p.P1366Sfs*24	ENST00000344624		1365	-/AG																																																																															
RASA1	5921	MSKCC	GRCh37	5	86629124	86629124	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	82	234	0	ENST00000274376.6:c.869A>G	p.Tyr290Cys	p.Y290C	ENST00000274376	NM_002890.2	290	tAc/tGc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149509478	149509478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	189	568	1	ENST00000261799.4:c.1421G>A	p.Ser474Asn	p.S474N	ENST00000261799	NM_002609.3	474	aGc/aAc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6027062	6027062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	98	342	0	ENST00000265849.7:c.1334G>A	p.Ser445Asn	p.S445N	ENST00000265849	NM_000535.5	445	aGc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0033651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	195	835	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29654770	29654772	+	frameshift_variant	Frame_Shift_Del	DEL	AAC	AAC	T			P-0033651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	92	405	0	ENST00000358273.4:c.5522_5524delinsT	p.Gln1841LeufsTer20	p.Q1841Lfs*20	ENST00000358273	NM_001042492.2	1841	cAACac/cTac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0033740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	288	410	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069158	5069158	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0033740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	194	269	0	ENST00000381652.3:c.1463C>G	p.Ser488Ter	p.S488*	ENST00000381652	NM_004972.3	488	tCa/tGa																																																																															
PGR	5241	MSKCC	GRCh37	11	100999210	100999210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	328	470	0	ENST00000325455.5:c.592C>A	p.Pro198Thr	p.P198T	ENST00000325455	NM_001202474.3	198	Ccg/Acg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602745	10602745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	505	602	0	ENST00000171111.5:c.833C>T	p.Pro278Leu	p.P278L	ENST00000171111	NM_203500.1	278	cCg/cTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135067	11135067	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	477	592	0	ENST00000344626.4:c.3034C>T	p.Gln1012Ter	p.Q1012*	ENST00000344626	NM_003072.3	1012	Cag/Tag																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073755	8073756	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	328	331	0	ENST00000377482.5:c.903dup	p.Ser302ValfsTer10	p.S302Vfs*10	ENST00000377482	NM_018948.3	301	-/G																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633568	69633568	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	57	130	0	ENST00000334134.2:c.134G>C	p.Arg45Pro	p.R45P	ENST00000334134	NM_005247.2	45	cGc/cCc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2105515	2105515	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	186	429	2	ENST00000219476.3:c.594G>T	p.Met198Ile	p.M198I	ENST00000219476	NM_000548.3	198	atG/atT																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15284978	15284978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	459	558	3	ENST00000263388.2:c.4637G>A	p.Arg1546His	p.R1546H	ENST00000263388	NM_000435.2	1546	cGc/cAc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910623	50910623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	578	598	0	ENST00000440232.2:c.1726G>C	p.Glu576Gln	p.E576Q	ENST00000440232	NM_002691.3	576	Gag/Cag																																																																															
ATR	545	MSKCC	GRCh37	3	142274791	142274791	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	260	402	0	ENST00000350721.4:c.2269C>T	p.Gln757Ter	p.Q757*	ENST00000350721	NM_001184.3	757	Caa/Taa																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749554	41749554	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0033740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	123	331	0	ENST00000226382.2:c.242-1G>T		p.X81_splice	ENST00000226382	NM_003924.3	81																																																																																
KDR	3791	MSKCC	GRCh37	4	55971022	55971023	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0033740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	149	484	0	ENST00000263923.4:c.1774_1775delinsAA	p.Pro592Lys	p.P592K	ENST00000263923	NM_002253.2	592	CCa/AAa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515306	149515306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	176	462	0	ENST00000261799.4:c.176C>A	p.Pro59Gln	p.P59Q	ENST00000261799	NM_002609.3	59	cCg/cAg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2951891	2951891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	320	564	0	ENST00000396946.4:c.3059C>A	p.Thr1020Lys	p.T1020K	ENST00000396946	NM_032415.4	1020	aCg/aAg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2963866	2963866	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0033740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	259	410	0	ENST00000396946.4:c.1940+1G>T		p.X647_splice	ENST00000396946	NM_032415.4	647																																																																																
WHSC1	7468	MSKCC	GRCh37	4	1902592	1902592	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	250	699	0	ENST00000382891.5:c.211C>G	p.Leu71Val	p.L71V	ENST00000382891	NM_133335.3	71	Ctg/Gtg																																																																															
IRF4	3662	MSKCC	GRCh37	6	407567	407567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	85	382	1	ENST00000380956.4:c.1325G>A	p.Arg442Lys	p.R442K	ENST00000380956	NM_001195286.1	442	aGa/aAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0033579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	221	543	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	167	427	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0033581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	45	373	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951994	178951994	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	70	521	0	ENST00000263967.3:c.3049G>C	p.Asp1017His	p.D1017H	ENST00000263967	NM_006218.2	1017	Gat/Cat																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81990375	81990375	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	68	548	0	ENST00000359376.3:c.3646C>G	p.Leu1216Val	p.L1216V	ENST00000359376	NM_002661.3	1216	Ctg/Gtg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223667	36223667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	78	854	1	ENST00000222270.7:c.6217G>A	p.Glu2073Lys	p.E2073K	ENST00000222270	NM_014727.1	2073	Gag/Aag																																																																															
ATRX	546	MSKCC	GRCh37	X	76845313	76845313	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	160	461	0	ENST00000373344.5:c.6208A>C	p.Ile2070Leu	p.I2070L	ENST00000373344	NM_000489.3	2070	Att/Ctt																																																																															
ATRX	546	MSKCC	GRCh37	X	76889054	76889054	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0033581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	120	388	0	ENST00000373344.5:c.4956G>T	p.Glu1652Asp	p.E1652D	ENST00000373344	NM_000489.3	1652	gaG/gaT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0033643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	302	427	2	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0033643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	272	575	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0033643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	131	278	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0033643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	166	414	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742473	17742473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	96	405	0	ENST00000250003.3:c.655G>A	p.Gly219Ser	p.G219S	ENST00000250003	NM_002478.4	219	Ggc/Agc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276256	15276256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	128	543	0	ENST00000263388.2:c.5738C>T	p.Ala1913Val	p.A1913V	ENST00000263388	NM_000435.2	1913	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175551	112175552	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0033643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	126	267	0	ENST00000257430.4:c.4260_4261del	p.Ser1421Ter	p.S1421*	ENST00000257430	NM_000038.5	1420	ccCAgt/ccgt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226802	2226803	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0033643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	116	453	0	ENST00000398665.3:c.4286_4287dup	p.Ala1430LeufsTer89	p.A1430Lfs*89	ENST00000398665	NM_032482.2	1428	atc/aTCtc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916640	178916669	+	inframe_deletion	In_Frame_Del	DEL	ACTGTGGGGCATCCACTTGATGCCCCCAAG	ACTGTGGGGCATCCACTTGATGCCCCCAAG	-			P-0033643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	226	238	0	ENST00000263967.3:c.28_57del	p.Leu10_Arg19del	p.L10_R19del	ENST00000263967	NM_006218.2	9	gaACTGTGGGGCATCCACTTGATGCCCCCAAGa/gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577533	7577534	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0033582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	209	763	1	ENST00000269305.4:c.747_748delinsTT	p.Arg249_Pro250delinsSerSer	p.R249_P250delinsSS	ENST00000269305	NM_001126112.2	249	agGCcc/agTTcc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78933885	78933885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	115	677	1	ENST00000306801.3:c.3485C>T	p.Pro1162Leu	p.P1162L	ENST00000306801	NM_020761.2	1162	cCt/cTt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0033670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	14	213	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0033670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	60	546	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0033670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	88	421	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576183	88576183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	29	496	0	ENST00000360948.2:c.1490G>T	p.Gly497Val	p.G497V	ENST00000360948	NM_001012338.2	497	gGg/gTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11291440	11291440	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	56	412	0	ENST00000361445.4:c.2566G>T	p.Glu856Ter	p.E856*	ENST00000361445	NM_004958.3	856	Gag/Tag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162735810	162735810	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	36	482	0	ENST00000367921.3:c.1119C>A	p.Asn373Lys	p.N373K	ENST00000367921	NM_006182.2	373	aaC/aaA																																																																															
TET1	80312	MSKCC	GRCh37	10	70404720	70404720	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	32	360	1	ENST00000373644.4:c.2234del	p.Arg745GlnfsTer12	p.R745Qfs*12	ENST00000373644	NM_030625.2	745	cGa/ca																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702349	47702349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	33	338	0	ENST00000233146.2:c.1945G>T	p.Ala649Ser	p.A649S	ENST00000233146	NM_000251.2	649	Gca/Tca																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500450	149500450	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0033670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	26	395	0	ENST00000261799.4:c.2586+1G>T		p.X862_splice	ENST00000261799	NM_002609.3	862																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8331636	8331636	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	37	446	0	ENST00000356435.5:c.5480T>A	p.Val1827Asp	p.V1827D	ENST00000356435		1827	gTc/gAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	60	519	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952088	178952088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	36	317	0	ENST00000263967.3:c.3143A>G	p.His1048Arg	p.H1048R	ENST00000263967	NM_006218.2	1048	cAt/cGt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38944588	38944588	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	169	378	0	ENST00000357387.3:c.4873del	p.Ser1625ValfsTer13	p.S1625Vfs*13	ENST00000357387	NM_152756.3	1625	Agt/gt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs879499034		P-0023770-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	226	645	1	ENST00000250448.2:c.798C>A	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060782	38060784	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0023770-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			928	458	1649	0	ENST00000250448.2:c.1205_1207del	p.Ile402del	p.I402del	ENST00000250448	NM_004496.3	402	aTCAac/aac																																																																															
CTCF	10664	MSKCC	GRCh37	16	67650654	67650654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023770-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			296	30	516	0	ENST00000264010.4:c.959G>A	p.Arg320His	p.R320H	ENST00000264010	NM_006565.3	320	cGt/cAt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44923045	44923048	+	frameshift_variant	Frame_Shift_Del	DEL	CTAT	CTAT	-			P-0033316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	72	252	0	ENST00000377967.4:c.1909_1912del	p.Ser637ThrfsTer53	p.S637Tfs*53	ENST00000377967	NM_021140.2	636	CTATct/ct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	83	504	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	47	451	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	23	371	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	154	547	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692902	89692902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	18	359	0	ENST00000371953.3:c.386G>A	p.Gly129Glu	p.G129E	ENST00000371953	NM_000314.4	129	gGa/gAa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509249	106509249	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	49	532	0	ENST00000359195.3:c.1243G>C	p.Glu415Gln	p.E415Q	ENST00000359195	NM_002649.2	415	Gag/Cag																																																																															
RHOA	387	MSKCC	GRCh37	3	49405978	49405978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	92	442	0	ENST00000418115.1:c.160G>A	p.Glu54Lys	p.E54K	ENST00000418115	NM_001664.2	54	Gag/Aag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347299	89347299	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	45	552	0	ENST00000301030.4:c.5651C>G	p.Ser1884Ter	p.S1884*	ENST00000301030	NM_001256183.1	1884	tCa/tGa																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858351	27858351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	35	541	0	ENST00000359303.2:c.220G>A	p.Glu74Lys	p.E74K	ENST00000359303	NM_003535.2	74	Gaa/Aaa																																																																															
NUF2	83540	MSKCC	GRCh37	1	163306627	163306627	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	35	246	0	ENST00000271452.3:c.424C>G	p.Leu142Val	p.L142V	ENST00000271452	NM_145697.2	142	Ctt/Gtt																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281040	49281040	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	22	561	0	ENST00000282018.3:c.87G>T	p.Arg29Ser	p.R29S	ENST00000282018	NM_020377.2	29	agG/agT																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348277	89348277	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	99	958	0	ENST00000301030.4:c.4673C>G	p.Ser1558Cys	p.S1558C	ENST00000301030	NM_001256183.1	1558	tCc/tGc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213896	36213896	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	54	584	0	ENST00000222270.7:c.2723-1G>A		p.X908_splice	ENST00000222270	NM_014727.1	908																																																																																
PDGFRB	5159	MSKCC	GRCh37	5	149513233	149513233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	66	627	0	ENST00000261799.4:c.850G>A	p.Glu284Lys	p.E284K	ENST00000261799	NM_002609.3	284	Gaa/Aaa																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858480	27858480	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	21	372	0	ENST00000359303.2:c.91C>G	p.Pro31Ala	p.P31A	ENST00000359303	NM_003535.2	31	Cca/Gca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860875	151860875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	31	354	0	ENST00000262189.6:c.9787G>A	p.Glu3263Lys	p.E3263K	ENST00000262189	NM_170606.2	3263	Gaa/Aaa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028871	47028871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	31	520	0	ENST00000329236.7:c.175G>A	p.Asp59Asn	p.D59N	ENST00000329236	NM_001204466.1	59	Gac/Aac																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222759	53222759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	109	887	1	ENST00000375401.3:c.4177G>A	p.Glu1393Lys	p.E1393K	ENST00000375401	NM_004187.3	1393	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	415	622	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	171	557	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31019279	31019279	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	151	411	0	ENST00000375687.4:c.874G>C	p.Asp292His	p.D292H	ENST00000375687	NM_015338.5	292	Gac/Cac																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30134479	30134479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	180	406	0	ENST00000263025.4:c.52G>A	p.Glu18Lys	p.E18K	ENST00000263025	NM_002746.2	18	Gag/Aag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845926	72845926	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	136	463	3	ENST00000268489.5:c.3541C>T	p.Gln1181Ter	p.Q1181*	ENST00000268489	NM_006885.3	1181	Caa/Taa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610405	10610405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	157	689	0	ENST00000171111.5:c.305C>T	p.Ser102Leu	p.S102L	ENST00000171111	NM_203500.1	102	tCa/tTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1221260	1221260	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0033325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	259	646	0	ENST00000326873.7:c.783C>G	p.Tyr261Ter	p.Y261*	ENST00000326873	NM_000455.4	261	taC/taG																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742468	17742468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	79	472	0	ENST00000250003.3:c.650C>A	p.Pro217Gln	p.P217Q	ENST00000250003	NM_002478.4	217	cCg/cAg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244426	41244426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	117	637	0	ENST00000357654.3:c.3122C>T	p.Ser1041Leu	p.S1041L	ENST00000357654	NM_007294.3	1041	tCa/tTa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71008510	71008510	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	78	321	0	ENST00000318789.4:c.1922A>T	p.Asp641Val	p.D641V	ENST00000318789	NM_032682.5	641	gAt/gTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140439614	140439614	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0033325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	120	566	0	ENST00000288602.6:c.2125C>A	p.Gln709Lys	p.Q709K	ENST00000288602	NM_004333.4	709	Caa/Aaa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8517995	8517995	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	29	393	0	ENST00000356435.5:c.1396T>A	p.Trp466Arg	p.W466R	ENST00000356435		466	Tgg/Agg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	124	421	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0033329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	151	479	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0033329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	223	668	2	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88726655	88726655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	118	417	0	ENST00000360948.2:c.389G>A	p.Arg130His	p.R130H	ENST00000360948	NM_001012338.2	130	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591821	48591821	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	122	452	0	ENST00000342988.3:c.984C>A	p.Tyr328Ter	p.Y328*	ENST00000342988	NM_005359.5	328	taC/taA																																																																															
MDM4	4194	MSKCC	GRCh37	1	204511944	204511945	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	93	322	0	ENST00000367182.3:c.547dup	p.Thr183AsnfsTer3	p.T183Nfs*3	ENST00000367182	NM_001278516.1	182	gaa/gAaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	28	351	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913288		P-0033343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	24	278	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0033359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	100	1003	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624242	89624243	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0033359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	18	245	0	ENST00000371953.3:c.17_18del	p.Lys6ArgfsTer4	p.K6Rfs*4	ENST00000371953	NM_000314.4	6	AAa/a																																																																															
CDH1	999	MSKCC	GRCh37	16	68772216	68772222	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAGGA	GCCAGGA	-			P-0033359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	104	1157	0	ENST00000261769.5:c.68_74del	p.Gln23ArgfsTer31	p.Q23Rfs*31	ENST00000261769	NM_004360.3	22	tGCCAGGAg/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501191		P-0033375-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			673	107	562	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0033375-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			848	21	525	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690847	89690847	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0033375-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			377	35	275	0	ENST00000371953.3:c.253+1G>T		p.X85_splice	ENST00000371953	NM_000314.4	85																																																																																
MEN1	4221	MSKCC	GRCh37	11	64573217	64573217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033375-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			820	69	635	0	ENST00000337652.1:c.1090G>A	p.Glu364Lys	p.E364K	ENST00000337652	NM_130803.2	364	Gag/Aag																																																																															
ATR	545	MSKCC	GRCh37	3	142226827	142226827	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033375-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			622	61	362	0	ENST00000350721.4:c.4977A>C	p.Glu1659Asp	p.E1659D	ENST00000350721	NM_001184.3	1659	gaA/gaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	105	509	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519947		P-0033379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	119	676	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519997		P-0033379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	150	814	0	ENST00000269305.4:c.332T>G	p.Leu111Arg	p.L111R	ENST00000269305	NM_001126112.2	111	cTg/cGg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971132	21971133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	139	691	0	ENST00000304494.5:c.225dupC	p.Ala76ArgfsTer44	p.A76Rfs*44	ENST00000304494	NM_000077.4	75	-/C																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	133	728	1	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	591	1881	0	ENST00000374672.4:c.1225A>C	p.Lys409Gln	p.K409Q	ENST00000374672	NM_004235.4	409	Aag/Cag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	417152	417152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	57	369	1	ENST00000399788.2:c.3398G>A	p.Arg1133Gln	p.R1133Q	ENST00000399788	NM_001042603.1	1133	cGg/cAg																																																																															
NF1	4763	MSKCC	GRCh37	17	29684303	29684303	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	222	597	0	ENST00000358273.4:c.7886del	p.Tyr2629LeufsTer15	p.Y2629Lfs*15	ENST00000358273	NM_001042492.2	2629	tAt/tt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40468861	40468861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	95	532	0	ENST00000264657.5:c.2203A>G	p.Met735Val	p.M735V	ENST00000264657	NM_139276.2	735	Atg/Gtg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9778759	9778759	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	299	693	0	ENST00000377346.4:c.1028T>C	p.Val343Ala	p.V343A	ENST00000377346	NM_005026.3	343	gTg/gCg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11313919	11313919	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	428	825	0	ENST00000361445.4:c.817C>T	p.Arg273Ter	p.R273*	ENST00000361445	NM_004958.3	273	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106078	27106078	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	266	510	0	ENST00000324856.7:c.5693delC	p.Pro1898HisfsTer25	p.P1898Hfs*25	ENST00000324856	NM_006015.4	1897	Ccc/cc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36938276	36938276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	457	976	1	ENST00000361632.4:c.685C>T	p.Pro229Ser	p.P229S	ENST00000361632		229	Ccc/Tcc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65313339	65313339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	351	543	0	ENST00000342505.4:c.1775G>A	p.Gly592Asp	p.G592D	ENST00000342505	NM_002227.2	592	gGc/gAc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325846	65325846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	272	450	0	ENST00000342505.4:c.1276G>A	p.Asp426Asn	p.D426N	ENST00000342505	NM_002227.2	426	Gac/Aac																																																																															
RET	5979	MSKCC	GRCh37	10	43617398	43617398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	251	522	0	ENST00000355710.3:c.2735G>A	p.Arg912Gln	p.R912Q	ENST00000355710	NM_020975.4	912	cGg/cAg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332820	70332820	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	367	684	1	ENST00000373644.4:c.725T>A	p.Met242Lys	p.M242K	ENST00000373644	NM_030625.2	242	aTg/aAg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138055	64138055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	514	1173	0	ENST00000334205.4:c.1978G>A	p.Ala660Thr	p.A660T	ENST00000334205	NM_003942.2	660	Gcc/Acc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	110	467	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																															
ATM	472	MSKCC	GRCh37	11	108186743	108186743	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3218670		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	213	409	1	ENST00000278616.4:c.6101G>A	p.Arg2034Gln	p.R2034Q	ENST00000278616	NM_000051.3	2034	cGa/cAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	350	720	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	498139	498139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	319	498	0	ENST00000399788.2:c.119G>A	p.Arg40Gln	p.R40Q	ENST00000399788	NM_001042603.1	40	cGg/cAg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18473957	18473957	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	125	374	0	ENST00000266497.5:c.1199A>C	p.Lys400Thr	p.K400T	ENST00000266497		400	aAa/aCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	293	555	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230571	46230571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	257	489	1	ENST00000334344.6:c.820C>T	p.Arg274Ter	p.R274*	ENST00000334344	NM_152641.2	274	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446710	49446710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	272	537	0	ENST00000301067.7:c.1100C>T	p.Pro367Leu	p.P367L	ENST00000301067	NM_003482.3	367	cCg/cTg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489534	56489534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	311	616	1	ENST00000267101.3:c.1999C>T	p.Arg667Cys	p.R667C	ENST00000267101	NM_001982.3	667	Cgt/Tgt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	451	973	3	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
MSI1	4440	MSKCC	GRCh37	12	120805863	120805863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	586	1205	3	ENST00000257552.2:c.215C>T	p.Ala72Val	p.A72V	ENST00000257552	NM_002442.3	72	gCg/gTg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432064	121432064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	586	1096	2	ENST00000257555.6:c.811C>T	p.Arg271Trp	p.R271W	ENST00000257555		271	Cgg/Tgg																																																																															
POLE	5426	MSKCC	GRCh37	12	133244145	133244145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	366	685	0	ENST00000320574.5:c.2263G>A	p.Val755Met	p.V755M	ENST00000320574	NM_006231.2	755	Gtg/Atg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562607	21562607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	215	456	1	ENST00000382592.4:c.1312G>A	p.Ala438Thr	p.A438T	ENST00000382592	NM_014572.2	438	Gcg/Acg																																																																															
RB1	5925	MSKCC	GRCh37	13	48921986	48921986	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	199	351	0	ENST00000267163.4:c.526C>T	p.Gln176Ter	p.Q176*	ENST00000267163	NM_000321.2	176	Caa/Taa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337651	73337651	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	168	280	0	ENST00000377767.4:c.2065C>T	p.Arg689Ter	p.R689*	ENST00000377767	NM_014953.3	689	Cga/Tga																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	172	272	7	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95566251	95566251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	277	493	0	ENST00000343455.3:c.4072C>T	p.Arg1358Cys	p.R1358C	ENST00000343455	NM_177438.2	1358	Cgc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42028430	42028430	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	25	416	0	ENST00000219905.7:c.3968A>G	p.Tyr1323Cys	p.Y1323C	ENST00000219905	NM_001164273.1	1323	tAt/tGt																																																																															
MGA	23269	MSKCC	GRCh37	15	42032393	42032393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	291	457	0	ENST00000219905.7:c.4577G>A	p.Arg1526Gln	p.R1526Q	ENST00000219905	NM_001164273.1	1526	cGg/cAg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88690584	88690584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	197	409	1	ENST00000360948.2:c.446C>T	p.Thr149Met	p.T149M	ENST00000360948	NM_001012338.2	149	aCg/aTg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99250908	99250908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	346	608	0	ENST00000268035.6:c.212G>A	p.Arg71His	p.R71H	ENST00000268035	NM_000875.3	71	cGc/cAc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3652269	3652269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	403	835	0	ENST00000294008.3:c.800C>T	p.Ala267Val	p.A267V	ENST00000294008	NM_032444.2	267	gCg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779810	3779810	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	513	1165	0	ENST00000262367.5:c.5238del	p.Leu1747TrpfsTer24	p.L1747Wfs*24	ENST00000262367	NM_004380.2	1746	ggG/gg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274101	10274102	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	377	911	0	ENST00000330684.3:c.167dup	p.Glu58ArgfsTer80	p.E58Rfs*80	ENST00000330684	NM_001134407.1	56	ggc/ggGc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14024573	14024573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	222	392	0	ENST00000311895.7:c.799C>T	p.Arg267Cys	p.R267C	ENST00000311895	NM_005236.2	267	Cgc/Tgc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30128084	30128084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	519	957	2	ENST00000263025.4:c.1045G>A	p.Ala349Thr	p.A349T	ENST00000263025	NM_002746.2	349	Gcc/Acc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829974	72829974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	447	933	2	ENST00000268489.5:c.6607C>T	p.Arg2203Cys	p.R2203C	ENST00000268489	NM_006885.3	2203	Cgt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992274	72992274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	579	1277	2	ENST00000268489.5:c.1771G>A	p.Ala591Thr	p.A591T	ENST00000268489	NM_006885.3	591	Gct/Act																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993509	72993509	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	351	850	5	ENST00000268489.5:c.536delG	p.Gly179AlafsTer22	p.G179Afs*22	ENST00000268489	NM_006885.3	179	gGc/gc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341353	89341353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	464	947	2	ENST00000301030.4:c.7582G>A	p.Val2528Ile	p.V2528I	ENST00000301030	NM_001256183.1	2528	Gta/Ata																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349526	89349526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	546	1109	0	ENST00000301030.4:c.3424G>A	p.Asp1142Asn	p.D1142N	ENST00000301030	NM_001256183.1	1142	Gac/Aac																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108238	8108238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	372	799	0	ENST00000585124.1:c.986C>T	p.Ala329Val	p.A329V	ENST00000585124	NM_004217.3	329	gCc/gTc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	231	683	3	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131402	17131402	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs398124537		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	437	825	2	ENST00000285071.4:c.50G>A	p.Arg17His	p.R17H	ENST00000285071	NM_144997.5	17	cGc/cAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29654671	29654671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	187	309	0	ENST00000358273.4:c.5423C>T	p.Thr1808Met	p.T1808M	ENST00000358273	NM_001042492.2	1808	aCg/aTg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37665977	37665977	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	248	455	0	ENST00000447079.4:c.2629G>T	p.Asp877Tyr	p.D877Y	ENST00000447079	NM_015083.1	877	Gat/Tat																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489585	40489585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	362	675	0	ENST00000264657.5:c.665C>T	p.Ala222Val	p.A222V	ENST00000264657	NM_139276.2	222	gCg/gTg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244679	41244679	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	308	1020	0	ENST00000357654.3:c.2869C>T	p.Gln957Ter	p.Q957*	ENST00000357654	NM_007294.3	957	Cag/Tag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	405	803	10	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492686	56492686	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	281	495	1	ENST00000407977.2:c.252+1G>A		p.X84_splice	ENST00000407977		84																																																																																
PIK3C3	5289	MSKCC	GRCh37	18	39609313	39609313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	207	359	0	ENST00000262039.4:c.1615C>T	p.Arg539Cys	p.R539C	ENST00000262039	NM_002647.2	539	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	276	546	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
BCL2	596	MSKCC	GRCh37	18	60985569	60985569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	277	470	0	ENST00000333681.4:c.331G>A	p.Asp111Asn	p.D111N	ENST00000333681		111	Gac/Aac																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099265	4099265	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150369301		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	561	1167	1	ENST00000262948.5:c.853G>A	p.Asp285Asn	p.D285N	ENST00000262948	NM_030662.3	285	Gac/Aac																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5215345	5215345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	328	748	0	ENST00000357368.4:c.4273G>A	p.Val1425Ile	p.V1425I	ENST00000357368	NM_002850.3	1425	Gtc/Atc																																																																															
INSR	3643	MSKCC	GRCh37	19	7152776	7152776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	485	818	0	ENST00000302850.5:c.2192C>T	p.Thr731Met	p.T731M	ENST00000302850	NM_000208.2	731	aCg/aTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10259611	10259611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	479	871	2	ENST00000340748.4:c.2621C>T	p.Ala874Val	p.A874V	ENST00000340748		874	gCg/gTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276696	15276696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	478	1070	3	ENST00000263388.2:c.5569C>T	p.Arg1857Trp	p.R1857W	ENST00000263388	NM_000435.2	1857	Cgg/Tgg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350825	15350825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	325	684	1	ENST00000263377.2:c.3178C>T	p.Arg1060Cys	p.R1060C	ENST00000263377	NM_058243.2	1060	Cgc/Tgc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18962999	18962999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	641	1166	0	ENST00000262803.5:c.866C>T	p.Pro289Leu	p.P289L	ENST00000262803	NM_002911.3	289	cCg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36209081	36209081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	59	123	0	ENST00000222270.7:c.161C>T	p.Thr54Met	p.T54M	ENST00000222270	NM_014727.1	54	aCg/aTg																																																																															
BBC3	27113	MSKCC	GRCh37	19	47725076	47725076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	685	1317	0	ENST00000449228.1:c.668G>A	p.Arg223Gln	p.R223Q	ENST00000449228	NM_001127240.2	223	cGa/cAa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467488	25467488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	392	835	0	ENST00000264709.3:c.1588G>A	p.Asp530Asn	p.D530N	ENST00000264709	NM_175629.2	530	Gac/Aac																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607487	46607487	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	484	1181	4	ENST00000263734.3:c.1681delC	p.Gln561SerfsTer7	p.Q561Sfs*7	ENST00000263734	NM_001430.4	559	aCc/ac																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702257	47702258	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	356	597	0	ENST00000233146.2:c.1854dup	p.Tyr619IlefsTer25	p.Y619Ifs*25	ENST00000233146	NM_000251.2	618	cca/ccAa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61721053	61721053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	253	452	0	ENST00000401558.2:c.1221G>T	p.Gln407His	p.Q407H	ENST00000401558	NM_003400.3	407	caG/caT																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198265140	198265140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	251	391	0	ENST00000335508.6:c.2737G>A	p.Gly913Ser	p.G913S	ENST00000335508	NM_012433.2	913	Ggc/Agc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023718	31023718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	413	869	2	ENST00000375687.4:c.3203G>A	p.Arg1068Gln	p.R1068Q	ENST00000375687	NM_015338.5	1068	cGa/cAa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46256365	46256365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	242	430	0	ENST00000371998.3:c.593G>A	p.Arg198His	p.R198H	ENST00000371998		198	cGt/cAt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441235	52441235	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs910211860		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	275	524	0	ENST00000460680.1:c.535C>T	p.Arg179Trp	p.R179W	ENST00000460680	NM_004656.3	179	Cgg/Tgg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643348	52643348	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	247	489	0	ENST00000394830.3:c.2548C>T	p.Arg850Ter	p.R850*	ENST00000394830	NM_018313.4	850	Cga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390945	89390945	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	185	444	0	ENST00000336596.2:c.1011C>G	p.Asn337Lys	p.N337K	ENST00000336596	NM_005233.5	337	aaC/aaG																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480396	89480396	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	227	357	0	ENST00000336596.2:c.2233C>T	p.Arg745Ter	p.R745*	ENST00000336596	NM_005233.5	745	Cga/Tga																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202786	128202786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	438	983	2	ENST00000341105.2:c.934G>A	p.Gly312Ser	p.G312S	ENST00000341105	NM_032638.4	312	Ggc/Agc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170013719	170013719	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1388201066		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	292	509	0	ENST00000295797.4:c.1438C>T	p.Arg480Cys	p.R480C	ENST00000295797	NM_002740.5	480	Cgc/Tgc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807543	1807543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	612	1244	1	ENST00000260795.2:c.1712G>A	p.Arg571Gln	p.R571Q	ENST00000260795		571	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	123	346	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540295	187540296	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	260	483	0	ENST00000441802.2:c.7444_7445del	p.Val2482AsnfsTer16	p.V2482Nfs*16	ENST00000441802	NM_005245.3	2482	GTa/a																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542779	187542779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	293	534	2	ENST00000441802.2:c.4961G>A	p.Arg1654His	p.R1654H	ENST00000441802	NM_005245.3	1654	cGt/cAt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526754	31526754	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	272	714	0	ENST00000344624.3:c.286del	p.Cys96AlafsTer12	p.C96Afs*12	ENST00000344624		96	Tgc/gc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67590452	67590452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	92	177	0	ENST00000274335.5:c.1514G>A	p.Ser505Asn	p.S505N	ENST00000274335		505	aGc/aAc																																																																															
APC	324	MSKCC	GRCh37	5	112116593	112116593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	152	261	0	ENST00000257430.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000257430	NM_000038.5	213	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112176192	112176192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	162	445	0	ENST00000257430.4:c.4901C>T	p.Pro1634Leu	p.P1634L	ENST00000257430	NM_000038.5	1634	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112178001	112178001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	43	384	1	ENST00000257430.4:c.6710G>A	p.Arg2237Gln	p.R2237Q	ENST00000257430	NM_000038.5	2237	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112179333	112179333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182456139		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	218	387	0	ENST00000257430.4:c.8042C>T	p.Pro2681Leu	p.P2681L	ENST00000257430	NM_000038.5	2681	cCg/cTg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149440505	149440505	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	369	793	0	ENST00000286301.3:c.1889T>C	p.Leu630Pro	p.L630P	ENST00000286301	NM_005211.3	630	cTc/cCc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522601	176522601	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	556	1118	4	ENST00000292408.4:c.1703delC	p.Pro568GlnfsTer53	p.P568Qfs*53	ENST00000292408	NM_213647.1	566	cgC/cg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	470	1347	5	ENST00000261937.6:c.1267dupC	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																															
IRF4	3662	MSKCC	GRCh37	6	394981	394981	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	223	439	0	ENST00000380956.4:c.377G>T	p.Arg126Met	p.R126M	ENST00000380956	NM_001195286.1	126	aGg/aTg																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225402	26225402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	102	206	0	ENST00000360408.1:c.20C>T	p.Thr7Met	p.T7M	ENST00000360408	NM_003532.2	7	aCg/aTg																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271224	26271224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	40	483	3	ENST00000305910.3:c.389G>A	p.Arg130His	p.R130H	ENST00000305910	NM_003534.2	130	cGc/cAc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552984	106552984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	369	747	0	ENST00000369096.4:c.949G>A	p.Gly317Arg	p.G317R	ENST00000369096	NM_001198.3	317	Ggg/Agg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004798	150004798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	284	521	0	ENST00000253339.5:c.1427C>T	p.Ser476Phe	p.S476F	ENST00000253339		476	tCt/tTt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099835	157099835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	476	907	0	ENST00000346085.5:c.772C>T	p.Gln258Ter	p.Q258*	ENST00000346085	NM_020732.3	258	Caa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55214367	55214367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778252		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	362	779	2	ENST00000275493.2:c.493C>T	p.Arg165Trp	p.R165W	ENST00000275493	NM_005228.3	165	Cgg/Tgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878749	151878749	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1211949081		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	214	484	0	ENST00000262189.6:c.6196C>T	p.Arg2066Ter	p.R2066*	ENST00000262189	NM_170606.2	2066	Cga/Tga																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275752	38275752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	336	594	1	ENST00000425967.3:c.1517G>A	p.Arg506Gln	p.R506Q	ENST00000425967	NM_001174067.1	506	cGg/cAg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38287325	38287325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	305	968	4	ENST00000425967.3:c.332G>A	p.Arg111His	p.R111H	ENST00000425967	NM_001174067.1	111	cGc/cAc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371918	55371918	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	168	619	0	ENST00000297316.4:c.608A>T	p.Tyr203Phe	p.Y203F	ENST00000297316	NM_022454.3	203	tAc/tTc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931890	68931890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	295	645	0	ENST00000288368.4:c.320C>T	p.Thr107Ile	p.T107I	ENST00000288368	NM_024870.2	107	aCc/aTc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738861	145738861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	574	1248	0	ENST00000428558.2:c.2204G>A	p.Arg735His	p.R735H	ENST00000428558	NM_004260.3	735	cGt/cAt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126343	5126343	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41316003		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	179	297	0	ENST00000381652.3:c.3188G>A	p.Arg1063His	p.R1063H	ENST00000381652	NM_004972.3	1063	cGt/cAt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636793	8636793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	249	568	0	ENST00000356435.5:c.116G>A	p.Gly39Glu	p.G39E	ENST00000356435		39	gGa/gAa																																																																															
TEK	7010	MSKCC	GRCh37	9	27169538	27169538	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	401	780	0	ENST00000380036.4:c.539A>G	p.His180Arg	p.H180R	ENST00000380036	NM_000459.3	180	cAt/cGt																																																																															
FANCC	2176	MSKCC	GRCh37	9	97873744	97873744	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	41	549	0	ENST00000289081.3:c.1329+1G>T		p.X443_splice	ENST00000289081	NM_000136.2	443																																																																																
ABL1	25	MSKCC	GRCh37	9	133760702	133760702	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	646	1356	0	ENST00000318560.5:c.3025C>T	p.Arg1009Ter	p.R1009*	ENST00000318560	NM_005157.4	1009	Cga/Tga																																																																															
STAG2	10735	MSKCC	GRCh37	X	123205089	123205089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	366	638	0	ENST00000218089.9:c.2449C>A	p.Pro817Thr	p.P817T	ENST00000218089	NM_001042749.1	817	Cct/Act																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8497249	8497249	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	34	231	0	ENST00000356435.5:c.2342C>A	p.Thr781Asn	p.T781N	ENST00000356435		781	aCt/aAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0033395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	128	703	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0033395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	35	243	0	ENST00000412916.2:c.165+1del		p.X55_splice	ENST00000412916		55																																																																																
ANKRD11	29123	MSKCC	GRCh37	16	89347055	89347056	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0033395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	44	482	0	ENST00000301030.4:c.5893_5894dup	p.Thr1966AlafsTer7	p.T1966Afs*7	ENST00000301030	NM_001256183.1	1965	ggc/ggGGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268959	55268959	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148019583		P-0033395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	94	628	0	ENST00000275493.2:c.3025G>A	p.Asp1009Asn	p.D1009N	ENST00000275493	NM_005228.3	1009	Gac/Aac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845743	151845743	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	47	602	0	ENST00000262189.6:c.13269C>A	p.Asp4423Glu	p.D4423E	ENST00000262189	NM_170606.2	4423	gaC/gaA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151875059	151875060	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	32	183	0	ENST00000262189.6:c.7478_7479insT	p.Ser2494GlufsTer31	p.S2494Efs*31	ENST00000262189	NM_170606.2	2493	ccg/ccTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880997	37880998	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0033395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	100	705	0	ENST00000269571.5:c.2326_2327insTT	p.Gly776ValfsTer16	p.G776Vfs*16	ENST00000269571		776	ggt/gTTgt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	119	426	0	ENST00000346208.3:c.1275dupA	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47699358	47699358	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1248	238	503	0	ENST00000347630.2:c.150A>C	p.Glu50Asp	p.E50D	ENST00000347630	NM_001007230.1	50	gaA/gaC																																																																															
GNA11	2767	MSKCC	GRCh37	19	3119038	3119038	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	82	714	0	ENST00000078429.4:c.722A>T	p.Glu241Val	p.E241V	ENST00000078429	NM_002067.2	241	gAg/gTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140434563	140434563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	14	200	0	ENST00000288602.6:c.2135C>T	p.Ala712Val	p.A712V	ENST00000288602	NM_004333.4	712	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0033405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	375	639	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0033405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	1304	521	1	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44950082	44950082	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0033405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	110	264	1	ENST00000377967.4:c.3851C>G	p.Ser1284Ter	p.S1284*	ENST00000377967	NM_021140.2	1284	tCa/tGa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393677	139393677	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	207	759	0	ENST00000277541.6:c.5969C>A	p.Ala1990Asp	p.A1990D	ENST00000277541	NM_017617.3	1990	gCc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	58	390	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25368492	25368492	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0033406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	66	289	0	ENST00000256078.4:c.453A>T	p.Arg151Ser	p.R151S	ENST00000256078	NM_033360.2	151	agA/agT																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986615	36986616	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	43	224	0	ENST00000354822.5:c.1073_1074insA	p.Asp359GlyfsTer80	p.D359Gfs*80	ENST00000354822	NM_001079668.2	358	ccg/ccAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460544	8460544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	43	314	0	ENST00000356435.5:c.3742G>A	p.Asp1248Asn	p.D1248N	ENST00000356435		1248	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	68	491	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	80	824	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0033408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	32	530	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0033408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	17	179	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
RET	5979	MSKCC	GRCh37	10	43597850	43597850	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138265837		P-0033408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	48	804	3	ENST00000355710.3:c.398G>A	p.Arg133His	p.R133H	ENST00000355710	NM_020975.4	133	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	199	825	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0033412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	41	304	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
APC	324	MSKCC	GRCh37	5	112170777	112170780	+	frameshift_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0033412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	121	644	0	ENST00000257430.4:c.1875_1878del	p.Asn627LeufsTer2	p.N627Lfs*2	ENST00000257430	NM_000038.5	625	CAGAca/ca																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610299	81610299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	31	413	0	ENST00000298171.2:c.1897G>A	p.Asp633Asn	p.D633N	ENST00000298171	NM_000369.2	633	Gac/Aac																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784959	9784959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	58	541	0	ENST00000377346.4:c.2962G>A	p.Glu988Lys	p.E988K	ENST00000377346	NM_005026.3	988	Gag/Aag																																																																															
MSH3	4437	MSKCC	GRCh37	5	80168956	80168956	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	73	749	0	ENST00000265081.6:c.3152A>G	p.Asp1051Gly	p.D1051G	ENST00000265081	NM_002439.4	1051	gAt/gGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	25	417	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104893810		P-0033428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	30	286	1	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73774928	73774928	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	39	493	0	ENST00000254810.4:c.245del	p.Asp82AlafsTer2	p.D82Afs*2	ENST00000254810	NM_005324.3	82	gAc/gc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	38	487	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	96	406	0	ENST00000263967.3:c.316G>C	p.Gly106Arg	p.G106R	ENST00000263967	NM_006218.2	106	Ggc/Cgc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061463	38061463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	56	364	0	ENST00000250448.2:c.526A>G	p.Ile176Val	p.I176V	ENST00000250448	NM_004496.3	176	Atc/Gtc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347299	89347299	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0033482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	41	499	0	ENST00000301030.4:c.5651C>G	p.Ser1884Ter	p.S1884*	ENST00000301030	NM_001256183.1	1884	tCa/tGa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023630	27023630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	10	203	0	ENST00000324856.7:c.736G>A	p.Ala246Thr	p.A246T	ENST00000324856	NM_006015.4	246	Gct/Act																																																																															
EED	8726	MSKCC	GRCh37	11	85968615	85968615	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	44	350	0	ENST00000263360.6:c.611A>T	p.Asn204Ile	p.N204I	ENST00000263360	NM_003797.3	204	aAt/aTt																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216083	7216083	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	56	322	0	ENST00000380728.2:c.976del	p.His326ThrfsTer19	p.H326Tfs*19	ENST00000380728		326	Cac/ac																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664823	138664823	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	40	89	0	ENST00000330315.3:c.742C>A	p.Leu248Met	p.L248M	ENST00000330315	NM_023067.3	248	Ctg/Atg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541528	187541528	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	33	422	0	ENST00000441802.2:c.6212T>C	p.Val2071Ala	p.V2071A	ENST00000441802	NM_005245.3	2071	gTa/gCa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123210196	123210196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	61	455	0	ENST00000218089.9:c.2548G>A	p.Asp850Asn	p.D850N	ENST00000218089	NM_001042749.1	850	Gat/Aat																																																																															
MTOR	2475	MSKCC	GRCh37	1	11300565	11300565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	19	908	0	ENST00000361445.4:c.1581G>T	p.Gln527His	p.Q527H	ENST00000361445	NM_004958.3	527	caG/caT																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115722	8115723	+	stop_gained	Nonsense_Mutation	DNP	GA	GA	AT			P-0033483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	27	465	1	ENST00000346208.3:c.1068_1069delinsAT	p.Met356_Lys357delinsIleTer	p.M356_K357delinsI*	ENST00000346208		356	atGAag/atATag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166842	32166842	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	16	799	3	ENST00000375023.3:c.4396C>A	p.Leu1466Ile	p.L1466I	ENST00000375023	NM_004557.3	1466	Ctc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	97	680	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0033485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	152	940	0	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27106138	27106138	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	39	559	0	ENST00000324856.7:c.5749A>G	p.Thr1917Ala	p.T1917A	ENST00000324856	NM_006015.4	1917	Act/Gct																																																																															
TCF3	6929	MSKCC	GRCh37	19	1650231	1650231	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	37	699	0	ENST00000344749.5:c.17G>C	p.Arg6Thr	p.R6T	ENST00000344749	NM_001136139.2	6	aGg/aCg																																																																															
MET	4233	MSKCC	GRCh37	7	116371809	116371809	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	45	587	0	ENST00000397752.3:c.1289del	p.Phe430SerfsTer10	p.F430Sfs*10	ENST00000397752	NM_000245.2	430	Ttc/tc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717735	89717739	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGT	AAAGT	-			P-0033488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	136	573	0	ENST00000371953.3:c.761_765del	p.Lys254ArgfsTer42	p.K254Rfs*42	ENST00000371953	NM_000314.4	254	AAAGTa/a																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	99	310	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098815	178098815	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1162	110	680	0	ENST00000397062.3:c.230A>T	p.Asp77Val	p.D77V	ENST00000397062	NM_006164.4	77	gAt/gTt																																																																															
LMO1	4004	MSKCC	GRCh37	11	8246143	8246172	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	TGGAGGCCAGGCGCCGGGCGTTACTGAACT	TGGAGGCCAGGCGCCGGGCGTTACTGAACT	-			P-0033489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	55	452	0	ENST00000335790.3:c.462_*20del		p.*154*	ENST00000335790	NM_002315.2	154																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10610331	10610331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	91	917	0	ENST00000171111.5:c.379G>T	p.Gly127Cys	p.G127C	ENST00000171111	NM_203500.1	127	Ggt/Tgt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134270	11134270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs797045981		P-0033489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	65	605	1	ENST00000344626.4:c.2936G>A	p.Arg979Gln	p.R979Q	ENST00000344626	NM_003072.3	979	cGa/cAa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390911	89390911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	34	381	0	ENST00000336596.2:c.977C>T	p.Pro326Leu	p.P326L	ENST00000336596	NM_005233.5	326	cCa/cTa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459840	149459840	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	91	773	0	ENST00000286301.3:c.367G>T	p.Ala123Ser	p.A123S	ENST00000286301	NM_005211.3	123	Gca/Tca																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609881	117609881	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	110	640	0	ENST00000368508.3:c.6818A>T	p.Asn2273Ile	p.N2273I	ENST00000368508	NM_002944.2	2273	aAc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0033498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	38	632	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0033498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	151	520	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0033498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	14	648	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0033498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	27	622	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0033498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	15	563	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52725373	52725374	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGA			P-0033498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	77	523	0	ENST00000322088.6:c.1541_1544dup	p.Asp515GlufsTer46	p.D515Efs*46	ENST00000322088	NM_014225.5	514	cag/cAGGAag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	45	550	0	ENST00000346208.3:c.1220_1221insA	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcAg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	113	611	0	ENST00000349310.3:c.155T>G	p.Leu52Arg	p.L52R	ENST00000349310	NM_001014432.1	52	cTc/cGc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257158	16257158	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	153	568	0	ENST00000375759.3:c.4423C>T	p.Arg1475Ter	p.R1475*	ENST00000375759	NM_015001.2	1475	Cga/Tga																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639941	3639941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	43	681	0	ENST00000294008.3:c.3698G>A	p.Gly1233Glu	p.G1233E	ENST00000294008	NM_032444.2	1233	gGg/gAg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52584526	52584526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	63	593	1	ENST00000394830.3:c.4487G>A	p.Arg1496Gln	p.R1496Q	ENST00000394830	NM_018313.4	1496	cGg/cAg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160711	56160711	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	62	412	0	ENST00000399503.3:c.985A>T	p.Ile329Phe	p.I329F	ENST00000399503	NM_005921.1	329	Att/Ttt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0033500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	109	432	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
MAP2K4	6416	MSKCC	GRCh37	17	12032515	12032515	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	83	401	0	ENST00000353533.5:c.952del	p.Thr318HisfsTer4	p.T318Hfs*4	ENST00000353533	NM_003010.3	317	ctA/ct																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485837	8485837	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	21	420	0	ENST00000356435.5:c.2980G>C	p.Val994Leu	p.V994L	ENST00000356435		994	Gta/Cta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577533	7577541	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTCCGGT	GCCTCCGGT	C			P-0033500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	115	615	0	ENST00000269305.4:c.740_748delinsG	p.Asn247SerfsTer14	p.N247Sfs*14	ENST00000269305	NM_001126112.2	247	aACCGGAGGCcc/aGcc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11293469	11293469	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	102	746	0	ENST00000361445.4:c.2407G>T	p.Gly803Ter	p.G803*	ENST00000361445	NM_004958.3	803	Gga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258927	16258928	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	93	692	1	ENST00000375759.3:c.6198dup	p.Pro2067ThrfsTer4	p.P2067Tfs*4	ENST00000375759	NM_015001.2	2064	-/A																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087886	27087886	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	131	641	0	ENST00000324856.7:c.2174del	p.Pro725HisfsTer17	p.P725Hfs*17	ENST00000324856	NM_006015.4	725	Cca/ca																																																																															
RET	5979	MSKCC	GRCh37	10	43597990	43597990	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	128	750	3	ENST00000355710.3:c.538C>T	p.Arg180Ter	p.R180*	ENST00000355710	NM_020975.4	180	Cga/Tga																																																																															
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765123636		P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	29	218	4	ENST00000369902.3:c.71dup	p.Ala25GlyfsTer23	p.A25Gfs*23	ENST00000369902	NM_016169.3	22	gcc/gCcc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	36	544	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																															
SESN3	143686	MSKCC	GRCh37	11	94910926	94910926	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145434950		P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	122	656	1	ENST00000536441.1:c.1204C>T	p.Arg402Cys	p.R402C	ENST00000536441	NM_144665.3	402	Cgc/Tgc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998796	100998796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	46	548	0	ENST00000325455.5:c.1006G>A	p.Ala336Thr	p.A336T	ENST00000325455	NM_001202474.3	336	Gcc/Acc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195839	102195839	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	79	527	1	ENST00000263464.3:c.599G>T	p.Gly200Val	p.G200V	ENST00000263464	NM_001165.4	200	gGa/gTa																																																																															
RAD52	5893	MSKCC	GRCh37	12	1036330	1036330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	308	610	0	ENST00000358495.3:c.448G>A	p.Gly150Arg	p.G150R	ENST00000358495	NM_134424.2	150	Ggg/Agg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	176	586	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1144	163	855	1	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56486569	56486569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	289	602	0	ENST00000267101.3:c.1148A>G	p.Lys383Arg	p.K383R	ENST00000267101	NM_001982.3	383	aAg/aGg																																																																															
MGA	23269	MSKCC	GRCh37	15	41989087	41989087	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	86	561	1	ENST00000219905.7:c.1879C>T	p.Arg627Ter	p.R627*	ENST00000219905	NM_001164273.1	627	Cga/Tga																																																																															
MGA	23269	MSKCC	GRCh37	15	42000305	42000305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	60	474	0	ENST00000219905.7:c.2324C>T	p.Ala775Val	p.A775V	ENST00000219905	NM_001164273.1	775	gCg/gTg																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2097756	2097756	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	33	541	0	ENST00000219066.1:c.93del	p.Cys32ValfsTer24	p.C32Vfs*24	ENST00000219066	NM_002528.5	31	ggG/gg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67660508	67660508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	88	589	0	ENST00000264010.4:c.1408C>T	p.Arg470Cys	p.R470C	ENST00000264010	NM_006565.3	470	Cgt/Tgt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347765	89347765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	101	565	0	ENST00000301030.4:c.5185G>A	p.Ala1729Thr	p.A1729T	ENST00000301030	NM_001256183.1	1729	Gcc/Acc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15964935	15964935	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	112	686	0	ENST00000268712.3:c.5661del	p.Pro1888GlnfsTer11	p.P1888Qfs*11	ENST00000268712	NM_006311.3	1887	ttT/tt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	127	734	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	88	595	4	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78857255	78857255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	108	608	2	ENST00000306801.3:c.1621G>A	p.Val541Met	p.V541M	ENST00000306801	NM_020761.2	541	Gtg/Atg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214871	36214871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	329	744	3	ENST00000222270.7:c.3302del	p.Pro1101LeufsTer81	p.P1101Lfs*81	ENST00000222270	NM_014727.1	1099	ggC/gg																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	157	408	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467200	25467200	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	30	479	1	ENST00000264709.3:c.1675del	p.Cys559AlafsTer92	p.C559Afs*92	ENST00000264709	NM_175629.2	559	Tgc/gc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128030517	128030517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	120	543	2	ENST00000285398.2:c.1751C>T	p.Thr584Met	p.T584M	ENST00000285398	NM_000122.1	584	aCg/aTg																																																																															
BARD1	580	MSKCC	GRCh37	2	215610562	215610562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146946984		P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	34	573	0	ENST00000260947.4:c.1694G>A	p.Arg565His	p.R565H	ENST00000260947	NM_000465.2	565	cGt/cAt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662544	227662544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	43	522	0	ENST00000305123.5:c.911G>A	p.Arg304His	p.R304H	ENST00000305123	NM_005544.2	304	cGc/cAc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715612	30715612	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	24	346	0	ENST00000359013.4:c.1345T>C	p.Tyr449His	p.Y449H	ENST00000359013	NM_001024847.2	449	Tac/Cac																																																																															
MLH1	4292	MSKCC	GRCh37	3	37038119	37038119	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	48	244	0	ENST00000231790.2:c.129del	p.Lys43AsnfsTer7	p.K43Nfs*7	ENST00000231790	NM_000249.3	42	gcA/gc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37091981	37091981	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	92	516	0	ENST00000231790.2:c.2109del	p.Val704CysfsTer79	p.V704Cfs*79	ENST00000231790	NM_000249.3	703	gAa/ga																																																																															
MST1	4485	MSKCC	GRCh37	3	49723037	49723037	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767971831		P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	72	300	0	ENST00000449682.2:c.1379G>A	p.Arg460Gln	p.R460Q	ENST00000449682	NM_020998.3	460	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112170823	112170823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	85	606	1	ENST00000257430.4:c.1919G>A	p.Arg640Gln	p.R640Q	ENST00000257430	NM_000038.5	640	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	130	339	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910371	29910372	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	37	471	0	ENST00000376809.5:c.46dupG	p.Ala16GlyfsTer83	p.A16Gfs*83	ENST00000376809	NM_002116.7	14	tcg/tcGg																																																																															
STK19	8859	MSKCC	GRCh37	6	31939801	31939801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	127	659	0	ENST00000375331.2:c.28G>A	p.Asp10Asn	p.D10N	ENST00000375331	NM_004197.1	10	Gat/Aat																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287213	33287213	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	39	617	0	ENST00000374542.5:c.1884delC	p.Cys629AlafsTer16	p.C629Afs*16	ENST00000374542	NM_001141970.1	628	ccC/cc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935615	13935615	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	45	564	0	ENST00000405192.2:c.1241A>T	p.Asp414Val	p.D414V	ENST00000405192	NM_001163147.1	414	gAc/gTc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508395	106508395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	99	282	0	ENST00000359195.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000359195	NM_002649.2	130	cGg/cAg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508725	106508725	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	102	574	2	ENST00000359195.3:c.723del	p.Gly242AlafsTer17	p.G242Afs*17	ENST00000359195	NM_002649.2	240	aCc/ac																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	96	712	0	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
BRAF	673	MSKCC	GRCh37	7	140494163	140494163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	291	862	0	ENST00000288602.6:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000288602	NM_004333.4	362	cGa/cAa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786922	135786922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	89	473	0	ENST00000298552.3:c.947G>A	p.Arg316Gln	p.R316Q	ENST00000298552	NM_001162426.1	316	cGg/cAg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938475	44938475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	29	268	0	ENST00000377967.4:c.3023C>T	p.Ala1008Val	p.A1008V	ENST00000377967	NM_021140.2	1008	gCa/gTa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411366	63411366	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	224	353	0	ENST00000330258.3:c.1801C>T	p.Arg601Ter	p.R601*	ENST00000330258	NM_152424.3	601	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411777	63411777	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	235	402	1	ENST00000330258.3:c.1390G>A	p.Ala464Thr	p.A464T	ENST00000330258	NM_152424.3	464	Gcc/Acc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0033508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	110	443	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0033508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	17	308	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125514077	125514077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	167	563	0	ENST00000428830.2:c.1015G>A	p.Val339Ile	p.V339I	ENST00000428830	NM_001114121.2	339	Gta/Ata																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943671	9943671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	53	652	0	ENST00000330684.3:c.1270C>T	p.Pro424Ser	p.P424S	ENST00000330684	NM_001134407.1	424	Ccc/Tcc																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0033516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	127	484	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0033516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	33	261	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	227	774	0	ENST00000269305.4:c.880delG	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	294	Gag/ag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920381	114920381	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	134	538	0	ENST00000543371.1:c.1322C>A	p.Ala441Glu	p.A441E	ENST00000543371	NM_001198531.1	441	gCa/gAa																																																																															
MGA	23269	MSKCC	GRCh37	15	41961256	41961256	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	91	624	0	ENST00000219905.7:c.164C>A	p.Ser55Ter	p.S55*	ENST00000219905	NM_001164273.1	55	tCa/tAa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2098751	2098752	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0033516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	143	568	0	ENST00000219476.3:c.138_138+1del		p.LR45fs	ENST00000219476	NM_000548.3	45	ctGAga/ctga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247344	153247344	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	163	356	1	ENST00000281708.4:c.1458G>T	p.Trp486Cys	p.W486C	ENST00000281708	NM_033632.3	486	tgG/tgT																																																																															
APC	324	MSKCC	GRCh37	5	112174511	112174511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	86	376	0	ENST00000257430.4:c.3220A>G	p.Thr1074Ala	p.T1074A	ENST00000257430	NM_000038.5	1074	Act/Gct																																																																															
TSC1	7248	MSKCC	GRCh37	9	135778096	135778096	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	196	630	0	ENST00000298552.3:c.2287C>T	p.Gln763Ter	p.Q763*	ENST00000298552	NM_001162426.1	763	Cag/Tag																																																																															
STK40	83931	MSKCC	GRCh37	1	36807460	36807460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	123	703	0	ENST00000373129.3:c.1204C>T	p.Arg402Trp	p.R402W	ENST00000373129	NM_032017.1	402	Cgg/Tgg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562837	95562837	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	159	381	0	ENST00000343455.3:c.4420A>T	p.Thr1474Ser	p.T1474S	ENST00000343455	NM_177438.2	1474	Acc/Tcc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892267	9892267	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	76	457	0	ENST00000330684.3:c.2223G>C	p.Arg741Ser	p.R741S	ENST00000330684	NM_001134407.1	741	agG/agC																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273988	10273988	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	144	766	0	ENST00000330684.3:c.281G>T	p.Arg94Leu	p.R94L	ENST00000330684	NM_001134407.1	94	cGc/cTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992326	72992326	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	102	810	0	ENST00000268489.5:c.1719C>G	p.Asn573Lys	p.N573K	ENST00000268489	NM_006885.3	573	aaC/aaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578209	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0033525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	216	650	0	ENST00000269305.4:c.640_641del	p.His214Ter	p.H214*	ENST00000269305	NM_001126112.2	214	CAt/t																																																																															
ALK	238	MSKCC	GRCh37	2	30143485	30143485	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	34	241	0	ENST00000389048.3:c.41T>C	p.Leu14Pro	p.L14P	ENST00000389048	NM_004304.4	14	cTt/cCt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31407021	31407021	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	80	495	0	ENST00000344624.3:c.3886C>T	p.Arg1296Ter	p.R1296*	ENST00000344624		1296	Cga/Tga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86627301	86627301	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	48	346	0	ENST00000274376.6:c.676G>C	p.Val226Leu	p.V226L	ENST00000274376	NM_002890.2	226	Gtt/Ctt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	38	343	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971110	21971110	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	46	349	0	ENST00000304494.5:c.248A>G	p.His83Arg	p.H83R	ENST00000304494	NM_000077.4	83	cAc/cGc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220489	1220489	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	80	565	0	ENST00000326873.7:c.582C>A	p.Asp194Glu	p.D194E	ENST00000326873	NM_000455.4	194	gaC/gaA																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039620	47039620	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	64	584	0	ENST00000329236.7:c.838C>T	p.Gln280Ter	p.Q280*	ENST00000329236	NM_001204466.1	280	Cag/Tag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713685	30713685	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	66	371	0	ENST00000359013.4:c.1085T>C	p.Leu362Pro	p.L362P	ENST00000359013	NM_001024847.2	362	cTg/cCg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144170	55144170	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	50	338	0	ENST00000257290.5:c.1999T>A	p.Ser667Thr	p.S667T	ENST00000257290	NM_006206.4	667	Tca/Aca																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057657	180057657	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	110	864	0	ENST00000261937.6:c.298G>T	p.Glu100Ter	p.E100*	ENST00000261937	NM_182925.4	100	Gag/Tag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508538	106508538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	21	241	0	ENST00000359195.3:c.532C>A	p.Arg178Ser	p.R178S	ENST00000359195	NM_002649.2	178	Cgt/Agt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460540	8460540	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	50	363	0	ENST00000356435.5:c.3746C>A	p.Pro1249His	p.P1249H	ENST00000356435		1249	cCc/cAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602799	10602799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1182	199	915	0	ENST00000171111.5:c.779G>T	p.Arg260Leu	p.R260L	ENST00000171111	NM_203500.1	260	cGa/cTa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937900	36937900	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	181	944	0	ENST00000361632.4:c.936G>T	p.Trp312Cys	p.W312C	ENST00000361632		312	tgG/tgT																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858133	9858133	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	120	737	0	ENST00000330684.3:c.3268G>C	p.Val1090Leu	p.V1090L	ENST00000330684	NM_001134407.1	1090	Gtg/Ctg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858149	9858149	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	121	715	0	ENST00000330684.3:c.3252C>A	p.Asp1084Glu	p.D1084E	ENST00000330684	NM_001134407.1	1084	gaC/gaA																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821601	72821642	+	inframe_deletion	In_Frame_Del	DEL	CCGCCGCCGCCGCCGCCACCGCCGCCGCCGCCGCCACTGCCA	CCGCCGCCGCCGCCGCCACCGCCGCCGCCGCCGCCACTGCCA	-			P-0033603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	42	85	0	ENST00000268489.5:c.10533_10574del	p.Ser3513_Gly3526del	p.S3513_G3526del	ENST00000268489	NM_006885.3	3511	ggTGGCAGTGGCGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGGc/ggc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220588	1220595	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGTTCG	CCCGTTCG	-			P-0033603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	143	660	0	ENST00000326873.7:c.607_614del	p.Pro203GlyfsTer60	p.P203Gfs*60	ENST00000326873	NM_000455.4	202	caCCCGTTCGcg/cacg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47155459	47155459	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	54	454	0	ENST00000409792.3:c.4622A>T	p.Asn1541Ile	p.N1541I	ENST00000409792	NM_014159.6	1541	aAt/aTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165654	47165654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	57	561	0	ENST00000409792.3:c.472G>T	p.Ala158Ser	p.A158S	ENST00000409792	NM_014159.6	158	Gct/Tct																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128420028	128420028	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	131	774	0	ENST00000265960.3:c.400C>A	p.Pro134Thr	p.P134T	ENST00000265960	NM_001006617.1	134	Cca/Aca																																																																															
RXRA	6256	MSKCC	GRCh37	9	137325955	137325955	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	143	622	0	ENST00000481739.1:c.1143G>C	p.Lys381Asn	p.K381N	ENST00000481739	NM_002957.4	381	aaG/aaC																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11129621	11129637	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGTTCCATCAGAACGC	TTGTTCCATCAGAACGC	G			P-0033603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	97	550	0	ENST00000344626.4:c.2439-12_2443delinsG		p.X813_splice	ENST00000344626	NM_003072.3	813																																																																																
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	49	643	0	ENST00000269305.4:c.746G>A	p.Arg249Lys	p.R249K	ENST00000269305	NM_001126112.2	249	aGg/aAg																																																																															
CDH1	999	MSKCC	GRCh37	16	68849462	68849463	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0033628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	41	576	0	ENST00000261769.5:c.1367_1368dup	p.Thr457Ter	p.T457*	ENST00000261769	NM_004360.3	455	-/GT																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112615	115112617	+	frameshift_variant	Frame_Shift_Del	DEL	GCT	GCT	A			P-0033628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1254	405	765	2	ENST00000257566.3:c.1123_1125delinsT	p.Ser375Ter	p.S375*	ENST00000257566	NM_016569.3	375	AGC/T																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118943	115118944	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	C			P-0033628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	53	260	0	ENST00000257566.3:c.397_398delinsG	p.Phe133ValfsTer6	p.F133Vfs*6	ENST00000257566	NM_016569.3	133	TTt/Gt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	24	490	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588210	69588210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	57	688	0	ENST00000168712.1:c.488C>A	p.Pro163His	p.P163H	ENST00000168712	NM_002007.2	163	cCc/cAc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986552	36986553	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	69	741	0	ENST00000354822.5:c.1136dup	p.His379GlnfsTer60	p.H379Qfs*60	ENST00000354822	NM_001079668.2	379	cac/caAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	320	589	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797906	45797906	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	334	414	0	ENST00000372115.3:c.823G>T	p.Val275Leu	p.V275L	ENST00000372115	NM_001048171.1	275	Gtg/Ttg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0033296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	298	747	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41197781	41197781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	61	927	0	ENST00000357654.3:c.5506G>A	p.Glu1836Lys	p.E1836K	ENST00000357654	NM_007294.3	1836	Gag/Aag																																																																															
RUNX1	861	MSKCC	GRCh37	21	36421175	36421175	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	53	355	0	ENST00000300305.3:c.22G>C	p.Glu8Gln	p.E8Q	ENST00000300305		8	Gag/Cag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420127	49420127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	75	743	0	ENST00000301067.7:c.15622G>A	p.Val5208Met	p.V5208M	ENST00000301067	NM_003482.3	5208	Gtg/Atg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355084	73355084	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	70	610	0	ENST00000377767.4:c.286C>T	p.Gln96Ter	p.Q96*	ENST00000377767	NM_014953.3	96	Caa/Taa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435321	110435321	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	37	489	0	ENST00000375856.3:c.3080C>A	p.Ser1027Ter	p.S1027*	ENST00000375856	NM_003749.2	1027	tCg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577044	7577045	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	488	1102	0	ENST00000269305.4:c.893dup	p.Leu299AlafsTer7	p.L299Afs*7	ENST00000269305	NM_001126112.2	298	gag/gaAg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40874924	40874924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	73	747	0	ENST00000428826.2:c.376G>A	p.Glu126Lys	p.E126K	ENST00000428826		126	Gag/Aag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696408	47696408	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0033296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	277	673	0	ENST00000347630.2:c.415A>T	p.Arg139Ter	p.R139*	ENST00000347630	NM_001007230.1	139	Aga/Tga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129372	152129372	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	143	718	0	ENST00000206249.3:c.325A>C	p.Met109Leu	p.M109L	ENST00000206249	NM_000125.3	109	Atg/Ctg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099130	157099130	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	37	354	0	ENST00000346085.5:c.67G>C	p.Ala23Pro	p.A23P	ENST00000346085	NM_020732.3	23	Gcg/Ccg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864693	68864693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	59	619	0	ENST00000288368.4:c.64C>T	p.Arg22Cys	p.R22C	ENST00000288368	NM_024870.2	22	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952117	178952117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	118	301	0	ENST00000263967.3:c.3172A>C	p.Ile1058Leu	p.I1058L	ENST00000263967	NM_006218.2	1058	Atc/Ctc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368229	45368229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	44	442	0	ENST00000262160.6:c.1373C>T	p.Ser458Phe	p.S458F	ENST00000262160	NM_005901.5	458	tCc/tTc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50920506	50920506	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	192	673	0	ENST00000440232.2:c.3198C>G	p.His1066Gln	p.H1066Q	ENST00000440232	NM_002691.3	1066	caC/caG																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024384	31024384	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	217	766	0	ENST00000375687.4:c.3869C>G	p.Ala1290Gly	p.A1290G	ENST00000375687	NM_015338.5	1290	gCc/gGc																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73096508	73096508	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0033357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	106	232	0	ENST00000356692.5:c.287+1G>T		p.X96_splice	ENST00000356692		96																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27022914	27022942	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCGCCGCCAGCAGCCTGGGCAACCCG	CCGCCGCCGCCAGCAGCCTGGGCAACCCG	-			P-0029576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	14	39	0	ENST00000324856.7:c.31_59del	p.Ser11AlafsTer90	p.S11Afs*90	ENST00000324856	NM_006015.4	7	cCCGCCGCCGCCAGCAGCCTGGGCAACCCG/c																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155654	56155654	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	123	381	0	ENST00000399503.3:c.746del	p.Arg249ProfsTer14	p.R249Pfs*14	ENST00000399503	NM_005921.1	249	cGc/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0033210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	260	627	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549364	187549364	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs111886222		P-0033210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	211	557	0	ENST00000441802.2:c.4754C>T	p.Thr1585Met	p.T1585M	ENST00000441802	NM_005245.3	1585	aCg/aTg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252878	36252878	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	150	382	0	ENST00000300305.3:c.484A>T	p.Arg162Trp	p.R162W	ENST00000300305		162	Agg/Tgg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115722	8115727	+	inframe_deletion	In_Frame_Del	DEL	GAAGAA	GAAGAA	-			P-0033210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	105	275	0	ENST00000346208.3:c.1069_1074del	p.Lys357_Lys358del	p.K357_K358del	ENST00000346208		356	atGAAGAAg/atg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645934	67645934	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	187	524	0	ENST00000264010.4:c.862C>G	p.His288Asp	p.H288D	ENST00000264010	NM_006565.3	288	Cac/Gac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	209	433	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0032981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	161	572	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40459418	40459418	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0032981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	286	392	0	ENST00000345506.4:c.1681-2A>C		p.X561_splice	ENST00000345506	NM_003152.3	561																																																																																
PALB2	79728	MSKCC	GRCh37	16	23634294	23634294	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	127	530	0	ENST00000261584.4:c.2992G>C	p.Gly998Arg	p.G998R	ENST00000261584	NM_024675.3	998	Gga/Cga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053133	180053133	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020943-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			342	222	594	0	ENST00000261937.6:c.1236C>G	p.Ile412Met	p.I412M	ENST00000261937	NM_182925.4	412	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0033172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	145	763	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395108	139395108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	10	761	1	ENST00000277541.6:c.5830G>A	p.Ala1944Thr	p.A1944T	ENST00000277541	NM_017617.3	1944	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	10	232	1	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226677	2226677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	11	818	0	ENST00000398665.3:c.4157G>A	p.Gly1386Asp	p.G1386D	ENST00000398665	NM_032482.2	1386	gGc/gAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993104	72993104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	20	928	0	ENST00000268489.5:c.941G>A	p.Arg314Gln	p.R314Q	ENST00000268489	NM_006885.3	314	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112174559	112174559	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	29	465	0	ENST00000257430.4:c.3268C>T	p.Gln1090Ter	p.Q1090*	ENST00000257430	NM_000038.5	1090	Caa/Taa																																																																															
PGR	5241	MSKCC	GRCh37	11	100998450	100998450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	72	404	1	ENST00000325455.5:c.1352C>T	p.Ala451Val	p.A451V	ENST00000325455	NM_001202474.3	451	gCg/gTg																																																																															
ATM	472	MSKCC	GRCh37	11	108155153	108155153	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	28	584	0	ENST00000278616.4:c.3946A>G	p.Thr1316Ala	p.T1316A	ENST00000278616	NM_000051.3	1316	Acc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0033174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	283	840	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0033174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	78	512	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
APC	324	MSKCC	GRCh37	5	112175758	112175758	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	31	352	0	ENST00000257430.4:c.4467del	p.Leu1489PhefsTer18	p.L1489Ffs*18	ENST00000257430	NM_000038.5	1489	ttA/tt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821596	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs767179754		P-0033174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	10	116	1	ENST00000268489.5:c.10579_10581del	p.Gly3527del	p.G3527del	ENST00000268489	NM_006885.3	3527	GGC/-																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119928	70119929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	120	438	0	ENST00000245479.2:c.932dup	p.Gln312ProfsTer266	p.Q312Pfs*266	ENST00000245479	NM_000346.3	310	-/G																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117878	70117888	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCAGGCGGC	GCGCAGGCGGC	-			P-0033174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	28	427	0	ENST00000245479.2:c.353_363del	p.Ala118GlufsTer130	p.A118Efs*130	ENST00000245479	NM_000346.3	116	GCGCAGGCGGCg/g																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858744	9858744	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	33	404	0	ENST00000330684.3:c.2657A>G	p.Asn886Ser	p.N886S	ENST00000330684	NM_001134407.1	886	aAt/aGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604758	48604759	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCACTTACACCGGGCCCTCCAGCTCCTAG			P-0033174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	70	417	0	ENST00000342988.3:c.1581_1609dup	p.Asp537ValfsTer10	p.D537Vfs*10	ENST00000342988	NM_005359.5	527	att/atTCACTTACACCGGGCCCTCCAGCTCCTAGt																																																																															
APC	324	MSKCC	GRCh37	5	112174348	112174348	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	10	244	0	ENST00000257430.4:c.3057del	p.Glu1020AsnfsTer2	p.E1020Nfs*2	ENST00000257430	NM_000038.5	1019	ggA/gg																																																																															
PARP1	142	MSKCC	GRCh37	1	226568869	226568869	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	49	561	0	ENST00000366794.5:c.1200G>T	p.Lys400Asn	p.K400N	ENST00000366794	NM_001618.3	400	aaG/aaT																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851287	63851287	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	144	581	0	ENST00000279873.7:c.2065C>G	p.Pro689Ala	p.P689A	ENST00000279873	NM_032199.2	689	Cca/Gca																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741493	17741493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	183	438	1	ENST00000250003.3:c.164C>A	p.Ala55Glu	p.A55E	ENST00000250003	NM_002478.4	55	gCg/gAg																																																																															
YAP1	10413	MSKCC	GRCh37	11	102033252	102033252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	108	518	2	ENST00000282441.5:c.638C>T	p.Thr213Ile	p.T213I	ENST00000282441	NM_001130145.2	213	aCa/aTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446856	49446856	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0033186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	88	394	0	ENST00000301067.7:c.955-1G>T		p.X319_splice	ENST00000301067	NM_003482.3	319																																																																																
FANCA	2175	MSKCC	GRCh37	16	89831472	89831472	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0033186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	65	426	0	ENST00000389301.3:c.2604T>G	p.Phe868Leu	p.F868L	ENST00000389301	NM_000135.2	868	ttT/ttG																																																																															
NF1	4763	MSKCC	GRCh37	17	29560179	29560179	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	28	335	0	ENST00000358273.4:c.3656G>T	p.Gly1219Val	p.G1219V	ENST00000358273	NM_001042492.2	1219	gGa/gTa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222179	2222179	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1237	223	751	0	ENST00000398665.3:c.3011A>G	p.His1004Arg	p.H1004R	ENST00000398665	NM_032482.2	1004	cAc/cGc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212578352	212578352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	19	365	0	ENST00000342788.4:c.905G>A	p.Ser302Asn	p.S302N	ENST00000342788	NM_005235.2	302	aGt/aAt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932222	39932222	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	123	514	0	ENST00000378444.4:c.2377C>T	p.Gln793Ter	p.Q793*	ENST00000378444	NM_001123385.1	793	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0033194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	253	479	2	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211491	98211491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	371	342	1	ENST00000331920.6:c.3664G>A	p.Asp1222Asn	p.D1222N	ENST00000331920	NM_000264.3	1222	Gac/Aac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	124	527	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	57	255	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	90	207	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	37	215	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	197	387	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100385	8100385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	129	558	0	ENST00000346208.3:c.359C>T	p.Thr120Met	p.T120M	ENST00000346208		120	aCg/aTg																																																																															
ATM	472	MSKCC	GRCh37	11	108123629	108123629	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148191382		P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	67	300	1	ENST00000278616.4:c.1888G>A	p.Val630Met	p.V630M	ENST00000278616	NM_000051.3	630	Gtg/Atg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28602396	28602396	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	120	365	0	ENST00000241453.7:c.1972C>A	p.Leu658Ile	p.L658I	ENST00000241453	NM_004119.2	658	Ctc/Atc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554543	63554543	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	25	415	0	ENST00000307078.5:c.196G>C	p.Glu66Gln	p.E66Q	ENST00000307078	NM_004655.3	66	Gag/Cag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251789	212251789	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	34	258	0	ENST00000342788.4:c.3270A>C	p.Glu1090Asp	p.E1090D	ENST00000342788	NM_005235.2	1090	gaA/gaC																																																																															
EP300	2033	MSKCC	GRCh37	22	41523747	41523747	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	116	452	0	ENST00000263253.7:c.1163G>T	p.Cys388Phe	p.C388F	ENST00000263253	NM_001429.3	388	tGc/tTc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143033768	143033768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	105	391	0	ENST00000262992.4:c.2203G>A	p.Glu735Lys	p.E735K	ENST00000262992	NM_001101669.1	735	Gaa/Aaa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32181937	32181937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	133	557	0	ENST00000375023.3:c.2117G>A	p.Cys706Tyr	p.C706Y	ENST00000375023	NM_004557.3	706	tGc/tAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340420	8340420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	54	394	0	ENST00000356435.5:c.5176G>A	p.Glu1726Lys	p.E1726K	ENST00000356435		1726	Gaa/Aaa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44966769	44966769	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	287	510	0	ENST00000377967.4:c.3993T>G	p.Cys1331Trp	p.C1331W	ENST00000377967	NM_021140.2	1331	tgT/tgG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	20	383	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TET1	80312	MSKCC	GRCh37	10	70405847	70405847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	47	439	1	ENST00000373644.4:c.3361G>A	p.Gly1121Ser	p.G1121S	ENST00000373644	NM_030625.2	1121	Ggc/Agc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38591612	38591612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	68	373	0	ENST00000299084.4:c.71G>T	p.Arg24Leu	p.R24L	ENST00000299084	NM_152594.2	24	cGa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	127	487	0	ENST00000269305.4:c.538G>T	p.Glu180Ter	p.E180*	ENST00000269305	NM_001126112.2	180	Gag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221302	1221302	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	89	427	2	ENST00000326873.7:c.827del	p.Gly276AlafsTer11	p.G276Afs*11	ENST00000326873	NM_000455.4	275	ccG/cc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15295780	15295781	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	58	697	2	ENST00000263388.2:c.2346_2347delinsCT	p.Gly783Trp	p.G783W	ENST00000263388	NM_000435.2	782	caTGgg/caCTgg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561320	9561320	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	57	429	0	ENST00000353224.5:c.462T>A	p.Asp154Glu	p.D154E	ENST00000353224	NM_177990.2	154	gaT/gaA																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31380450	31380450	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	76	341	0	ENST00000328111.2:c.940G>T	p.Gly314Cys	p.G314C	ENST00000328111	NM_006892.3	314	Ggc/Tgc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430642	181430642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	60	327	0	ENST00000325404.1:c.494G>C	p.Gly165Ala	p.G165A	ENST00000325404	NM_003106.3	165	gGc/gCc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541039	187541039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	34	256	0	ENST00000441802.2:c.6701G>A	p.Gly2234Glu	p.G2234E	ENST00000441802	NM_005245.3	2234	gGa/gAa																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045717	26045717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	49	202	0	ENST00000540144.1:c.79C>T	p.Arg27Cys	p.R27C	ENST00000540144	NM_003531.2	27	Cgt/Tgt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945120	151945120	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	67	483	0	ENST00000262189.6:c.2399A>T	p.Tyr800Phe	p.Y800F	ENST00000262189	NM_170606.2	800	tAc/tTc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226961	53226961	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	72	474	0	ENST00000375401.3:c.2614G>T	p.Asp872Tyr	p.D872Y	ENST00000375401	NM_004187.3	872	Gat/Tat																																																																															
MED12	9968	MSKCC	GRCh37	X	70342984	70342984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	72	460	0	ENST00000374080.3:c.1525G>A	p.Glu509Lys	p.E509K	ENST00000374080		509	Gaa/Aaa																																																																															
BTK	695	MSKCC	GRCh37	X	100625035	100625035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	63	430	0	ENST00000308731.7:c.342C>A	p.Phe114Leu	p.F114L	ENST00000308731	NM_000061.2	114	ttC/ttA																																																																															
STAG2	10735	MSKCC	GRCh37	X	123196968	123196968	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	54	364	0	ENST00000218089.9:c.1734C>A	p.Tyr578Ter	p.Y578*	ENST00000218089	NM_001042749.1	578	taC/taA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	76	332	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0033239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	178	380	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	118	308	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578520	7578520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	296	591	1	ENST00000269305.4:c.410T>A	p.Leu137Gln	p.L137Q	ENST00000269305	NM_001126112.2	137	cTg/cAg																																																																															
CALR	811	MSKCC	GRCh37	19	13049949	13049949	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0033255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	25	242	0	ENST00000316448.5:c.93C>G	p.Asp31Glu	p.D31E	ENST00000316448	NM_004343.3	31	gaC/gaG																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42851168	42851168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	80	380	1	ENST00000398585.3:c.725G>A	p.Gly242Glu	p.G242E	ENST00000398585	NM_001135099.1	242	gGa/gAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268197	153268197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	100	199	0	ENST00000281708.4:c.611C>T	p.Ala204Val	p.A204V	ENST00000281708	NM_033632.3	204	gCa/gTa																																																																															
MSH3	4437	MSKCC	GRCh37	5	80109427	80109427	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	79	311	0	ENST00000265081.6:c.2680A>G	p.Ile894Val	p.I894V	ENST00000265081	NM_002439.4	894	Att/Gtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578469	+	frameshift_variant	Frame_Shift_Del	DEL	CGGACGCGGGTGC	CGGACGCGGGTGC	-			P-0033219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	196	412	0	ENST00000269305.4:c.461_473del	p.Gly154AlafsTer12	p.G154Afs*12	ENST00000269305	NM_001126112.2	154	gGCACCCGCGTCCGc/gc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874012	151874012	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	140	404	0	ENST00000262189.6:c.8526T>G	p.Asn2842Lys	p.N2842K	ENST00000262189	NM_170606.2	2842	aaT/aaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	163	835	0	ENST00000269305.4:c.487T>A	p.Tyr163Asn	p.Y163N	ENST00000269305	NM_001126112.2	163	Tac/Aac																																																																															
NF1	4763	MSKCC	GRCh37	17	29667635	29667638	+	frameshift_variant	Frame_Shift_Del	DEL	TAGA	TAGA	-			P-0032995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	118	591	0	ENST00000358273.4:c.7037_7040del	p.Asp2346ValfsTer49	p.D2346Vfs*49	ENST00000358273	NM_001042492.2	2345	tTAGAt/tt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436986	110436986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	10	33	0	ENST00000375856.3:c.1415C>T	p.Pro472Leu	p.P472L	ENST00000375856	NM_003749.2	472	cCg/cTg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246550	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	TC	TC	CG			P-0032995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	265	544	0	ENST00000349310.3:c.49_50delinsCG	p.Glu17Arg	p.E17R	ENST00000349310	NM_001014432.1	17	GAg/CGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0033056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	85	838	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246091235	246091235	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0033056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	28	419	0	ENST00000388985.4:c.700G>T	p.Glu234Ter	p.E234*	ENST00000388985		234	Gag/Tag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231588	5231588	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	37	256	1	ENST00000357368.4:c.1888G>T	p.Val630Leu	p.V630L	ENST00000357368	NM_002850.3	630	Gtg/Ttg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11107018	11107018	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	54	537	0	ENST00000344626.4:c.1723C>T	p.Gln575Ter	p.Q575*	ENST00000344626	NM_003072.3	575	Cag/Tag																																																																															
BCL6	604	MSKCC	GRCh37	3	187444571	187444571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	66	678	0	ENST00000232014.4:c.1656G>T	p.Gln552His	p.Q552H	ENST00000232014	NM_001130845.1	552	caG/caT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662564	117662564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0033056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	44	499	2	ENST00000368508.3:c.4901A>T	p.Lys1634Met	p.K1634M	ENST00000368508	NM_002944.2	1634	aAg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853062	151853062	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	53	514	0	ENST00000262189.6:c.11893G>T	p.Gly3965Cys	p.G3965C	ENST00000262189	NM_170606.2	3965	Ggc/Tgc																																																																															
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018607-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			478	33	269	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018607-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			490	59	406	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018607-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			345	88	570	0	ENST00000269305.4:c.613T>C	p.Tyr205His	p.Y205H	ENST00000269305	NM_001126112.2	205	Tat/Cat																																																																															
AR	367	MSKCC	GRCh37	X	66765159	66765200	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	-			P-0018607-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			178	125	93	0	ENST00000374690.3:c.198_239del	p.Gln67_Gln80del	p.Q67_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573983	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0018607-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			460	31	617	1	ENST00000269305.4:c.1044_1045delinsTT	p.Leu348_Glu349delinsPheTer	p.L348_E349delinsF*	ENST00000269305	NM_001126112.2	348	ttGGaa/ttTTaa																																																																															
MGA	23269	MSKCC	GRCh37	15	42026794	42026794	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0018607-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			305	162	310	0	ENST00000219905.7:c.3916+2T>A		p.X1306_splice	ENST00000219905	NM_001164273.1	1306																																																																																
TCF3	6929	MSKCC	GRCh37	19	1615695	1615695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018607-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			469	283	672	0	ENST00000344749.5:c.1576G>A	p.Ala526Thr	p.A526T	ENST00000344749	NM_001136139.2	526	Gcc/Acc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0033141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	34	465	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0033141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	57	628	1	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
MPL	4352	MSKCC	GRCh37	1	43803817	43803817	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs148434485		P-0033141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	45	639	1	ENST00000372470.3:c.127C>T	p.Arg43Ter	p.R43*	ENST00000372470	NM_005373.2	43	Cga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114116	115114116	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0033141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	36	431	0	ENST00000257566.3:c.1099+2T>G		p.X367_splice	ENST00000257566	NM_016569.3	367																																																																																
SMAD3	4088	MSKCC	GRCh37	15	67477161	67477161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	38	490	0	ENST00000327367.4:c.968G>A	p.Arg323His	p.R323H	ENST00000327367	NM_005902.3	323	cGc/cAc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391121	89391121	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	42	451	0	ENST00000336596.2:c.1187T>C	p.Val396Ala	p.V396A	ENST00000336596	NM_005233.5	396	gTg/gCg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86674219	86674219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	28	256	0	ENST00000274376.6:c.2351C>T	p.Ala784Val	p.A784V	ENST00000274376	NM_002890.2	784	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	99	795	1	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGTG			P-0033156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	111	552	0	ENST00000275493.2:c.2303_2304insTGTGGCCAG	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGTGtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006143-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			618	26	488	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0006143-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			173	24	457	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0006143-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			656	55	625	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	75	422	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0033030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	77	513	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133250243	133250244	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	63	482	0	ENST00000320574.5:c.1276dup	p.Ala426GlyfsTer10	p.A426Gfs*10	ENST00000320574	NM_006231.2	426	gcg/gGcg																																																																															
APC	324	MSKCC	GRCh37	5	112175738	112175738	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	90	269	0	ENST00000257430.4:c.4448del	p.Pro1483GlnfsTer24	p.P1483Qfs*24	ENST00000257430	NM_000038.5	1483	Cca/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	129	428	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39620648	39620648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	46	507	0	ENST00000262039.4:c.2046G>A	p.Met682Ile	p.M682I	ENST00000262039	NM_002647.2	682	atG/atA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0033039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	58	442	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0033039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	114	373	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0033039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	53	227	0	ENST00000257430.4:c.4037C>G	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tGa																																																																															
APC	324	MSKCC	GRCh37	5	112178561	112178607	+	frameshift_variant	Frame_Shift_Del	DEL	TCAAGTGGAAGTGAATCTGATAGATCAGAAAGACCTGTATTAGTACG	TCAAGTGGAAGTGAATCTGATAGATCAGAAAGACCTGTATTAGTACG	-			P-0033039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	29	320	0	ENST00000257430.4:c.7270_7316del	p.Ser2424ProfsTer24	p.S2424Pfs*24	ENST00000257430	NM_000038.5	2424	TCAAGTGGAAGTGAATCTGATAGATCAGAAAGACCTGTATTAGTACGc/c																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001529	150001529	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	97	619	0	ENST00000253339.5:c.2075A>G	p.Tyr692Cys	p.Y692C	ENST00000253339		692	tAc/tGc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	51	358	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47061249	47061249	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0033068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	69	535	0	ENST00000409792.3:c.7431+1G>T		p.X2477_splice	ENST00000409792	NM_014159.6	2477																																																																																
INSR	3643	MSKCC	GRCh37	19	7170632	7170632	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	51	702	0	ENST00000302850.5:c.1399del	p.His467ThrfsTer20	p.H467Tfs*20	ENST00000302850	NM_000208.2	467	Cac/ac																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129917	55129917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	87	589	0	ENST00000257290.5:c.451C>T	p.Arg151Cys	p.R151C	ENST00000257290	NM_006206.4	151	Cgc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0033075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	25	497	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28908205	28908205	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	17	589	0	ENST00000282397.4:c.2550G>C	p.Lys850Asn	p.K850N	ENST00000282397	NM_002019.4	850	aaG/aaC																																																																															
TSC2	7249	MSKCC	GRCh37	16	2103421	2103421	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	19	614	0	ENST00000219476.3:c.304C>A	p.Leu102Met	p.L102M	ENST00000219476	NM_000548.3	102	Ctg/Atg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738456	145738456	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	14	612	0	ENST00000428558.2:c.2529G>C	p.Lys843Asn	p.K843N	ENST00000428558	NM_004260.3	843	aaG/aaC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0033078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	370	517	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0033078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	283	822	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
MSH3	4437	MSKCC	GRCh37	5	79950697	79950705	+	inframe_deletion	In_Frame_Del	DEL	GCTGCAGCG	GCTGCAGCG	-			P-0033078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	27	218	1	ENST00000265081.6:c.162_170delTGCAGCGGC	p.Ala60_Ala62del	p.A60_A62del	ENST00000265081	NM_002439.4	51	GCTGCAGCG/-																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14024607	14024607	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	164	622	0	ENST00000311895.7:c.833G>C	p.Gly278Ala	p.G278A	ENST00000311895	NM_005236.2	278	gGa/gCa																																																																															
CDH1	999	MSKCC	GRCh37	16	68847366	68847366	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	253	684	1	ENST00000261769.5:c.1288G>T	p.Val430Leu	p.V430L	ENST00000261769	NM_004360.3	430	Gtg/Ttg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89842153	89842153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	227	611	0	ENST00000389301.3:c.1897G>T	p.Glu633Ter	p.E633*	ENST00000389301	NM_000135.2	633	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0033079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	364	575	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	306	519	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797934	45797934	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	351	603	0	ENST00000372115.3:c.795C>G	p.Asn265Lys	p.N265K	ENST00000372115	NM_001048171.1	265	aaC/aaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	118	671	0	ENST00000269305.4:c.581T>C	p.Leu194Pro	p.L194P	ENST00000269305	NM_001126112.2	194	cTt/cCt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0033082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	50	476	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																															
MPL	4352	MSKCC	GRCh37	1	43805762	43805762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	66	720	0	ENST00000372470.3:c.818C>G	p.Ser273Cys	p.S273C	ENST00000372470	NM_005373.2	273	tCc/tGc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464953	120464953	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	103	592	0	ENST00000256646.2:c.5119G>T	p.Gly1707Cys	p.G1707C	ENST00000256646	NM_024408.3	1707	Ggc/Tgc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149433730	149433730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	64	808	0	ENST00000286301.3:c.2821G>A	p.Glu941Lys	p.E941K	ENST00000286301	NM_005211.3	941	Gag/Aag																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127915901	127915901	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	139	683	0	ENST00000373547.4:c.580C>A	p.Leu194Met	p.L194M	ENST00000373547	NM_002721.4	194	Ctg/Atg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123176493	123176493	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	25	181	0	ENST00000218089.9:c.460G>A	p.Glu154Lys	p.E154K	ENST00000218089	NM_001042749.1	154	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0033093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	544	494	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0033093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	114	756	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767326		P-0033093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	47	480	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39595510	39595510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	18	370	0	ENST00000262039.4:c.1396C>T	p.Pro466Ser	p.P466S	ENST00000262039	NM_002647.2	466	Cca/Tca																																																																															
RB1	5925	MSKCC	GRCh37	13	48942662	48942662	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0033093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	41	355	2	ENST00000267163.4:c.1050-1G>T		p.X350_splice	ENST00000267163	NM_000321.2	350																																																																																
SDHA	6389	MSKCC	GRCh37	5	236684	236684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	44	362	0	ENST00000264932.6:c.1402G>A	p.Ala468Thr	p.A468T	ENST00000264932	NM_004168.2	468	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	47	602	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0033102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	57	690	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	32	638	1	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770576	40770576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	45	591	2	ENST00000373198.4:c.2806C>T	p.Arg936Ter	p.R936*	ENST00000373198	NM_133170.3	936	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	61	404	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0033127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	66	736	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53246390	53246390	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	88	757	0	ENST00000375401.3:c.592C>T	p.Arg198Ter	p.R198*	ENST00000375401	NM_004187.3	198	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439925	56439925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	80	512	1	ENST00000407977.2:c.667C>T	p.Arg223Cys	p.R223C	ENST00000407977		223	Cgc/Tgc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46254641	46254641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	51	543	0	ENST00000334344.6:c.4831C>T	p.Gln1611Ter	p.Q1611*	ENST00000334344	NM_152641.2	1611	Cag/Tag																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622362	1622362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	47	653	2	ENST00000344749.5:c.602C>T	p.Pro201Leu	p.P201L	ENST00000344749	NM_001136139.2	201	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112175483	112175483	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	32	442	1	ENST00000257430.4:c.4192del	p.Ser1398ValfsTer17	p.S1398Vfs*17	ENST00000257430	NM_000038.5	1398	Agt/gt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374741	118374741	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	267	380	0	ENST00000534358.1:c.8134T>C	p.Cys2712Arg	p.C2712R	ENST00000534358	NM_005933.3	2712	Tgt/Cgt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21555632	21555636	+	frameshift_variant	Frame_Shift_Del	DEL	TGTAG	TGTAG	-			P-0030953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	216	518	0	ENST00000382592.4:c.2634_2638del	p.Tyr879ArgfsTer15	p.Y879Rfs*15	ENST00000382592	NM_014572.2	878	aaCTACAtc/aatc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95572415	95572415	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	123	445	0	ENST00000343455.3:c.2950A>C	p.Asn984His	p.N984H	ENST00000343455	NM_177438.2	984	Aac/Cac																																																																															
FANCA	2175	MSKCC	GRCh37	16	89866048	89866048	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0030953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	137	433	0	ENST00000389301.3:c.793-2A>T		p.X265_splice	ENST00000389301	NM_000135.2	265																																																																																
EP300	2033	MSKCC	GRCh37	22	41573806	41573806	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	645	737	0	ENST00000263253.7:c.6091C>G	p.Pro2031Ala	p.P2031A	ENST00000263253	NM_001429.3	2031	Cca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7576888	7576888	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0032646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	109	820	0	ENST00000269305.4:c.958A>T	p.Lys320Ter	p.K320*	ENST00000269305	NM_001126112.2	320	Aag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42034782	42034782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	79	533	0	ENST00000219905.7:c.4624G>A	p.Val1542Met	p.V1542M	ENST00000219905	NM_001164273.1	1542	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0032649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	313	750	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	247	505	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945533	151945534	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0032649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	196	509	0	ENST00000262189.6:c.1985_1986del	p.Val662AlafsTer12	p.V662Afs*12	ENST00000262189	NM_170606.2	662	gTG/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0032658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	235	761	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
RAC1	5879	MSKCC	GRCh37	7	6442009	6442009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	24	320	1	ENST00000356142.4:c.568G>A	p.Glu190Lys	p.E190K	ENST00000356142	NM_018890.3	190	Gaa/Aaa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828143	243828143	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	120	612	0	ENST00000263826.5:c.215T>A	p.Phe72Tyr	p.F72Y	ENST00000263826	NM_005465.4	72	tTt/tAt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246033	41246033	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	23	822	0	ENST00000357654.3:c.1515A>C	p.Lys505Asn	p.K505N	ENST00000357654	NM_007294.3	505	aaA/aaC																																																																															
CUL3	8452	MSKCC	GRCh37	2	225338978	225338978	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	80	542	0	ENST00000264414.4:c.2291A>G	p.Tyr764Cys	p.Y764C	ENST00000264414	NM_003590.4	764	tAc/tGc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499325	89499325	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0032658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	59	368	0	ENST00000336596.2:c.2497-2A>T		p.X833_splice	ENST00000336596	NM_005233.5	833																																																																																
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0032717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	853	633	4	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0032717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	86	306	1	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426771	49426772	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			P-0032717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	249	372	2	ENST00000301067.7:c.11714_11716dup	p.Gln3905dup	p.Q3905dup	ENST00000301067	NM_003482.3	3905	ctg/cAGCtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	187	405	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0032744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	75	463	0	ENST00000269305.4:c.560-1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0032811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	86	264	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87636204	87636204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	83	333	0	ENST00000277120.3:c.2369G>A	p.Arg790Gln	p.R790Q	ENST00000277120		790	cGa/cAa																																																																															
CDH1	999	MSKCC	GRCh37	16	68842683	68842684	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	167	519	0	ENST00000261769.5:c.621dup	p.Glu208Ter	p.E208*	ENST00000261769	NM_004360.3	207	att/aTtt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0032822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	2472	462	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0032822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	56	343	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0032822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	492	645	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044898	47044898	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	409	398	0	ENST00000329236.7:c.1990C>T	p.Gln664Ter	p.Q664*	ENST00000329236	NM_001204466.1	664	Cag/Tag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748421	162748421	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	75	436	0	ENST00000367921.3:c.2335G>T	p.Glu779Ter	p.E779*	ENST00000367921	NM_006182.2	779	Gag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153271269	153271269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	26	209	0	ENST00000281708.4:c.509G>A	p.Arg170Lys	p.R170K	ENST00000281708	NM_033632.3	170	aGa/aAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	268	502	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0032825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	358	637	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112154942	112154942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	345	612	1	ENST00000257430.4:c.1213C>T	p.Arg405Ter	p.R405*	ENST00000257430	NM_000038.5	405	Cga/Tga																																																																															
MDM2	4193	MSKCC	GRCh37	12	69207357	69207357	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	252	460	0	ENST00000462284.1:c.123G>T	p.Leu41Phe	p.L41F	ENST00000462284	NM_002392.5	41	ttG/ttT																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56774157	56774158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	369	526	2	ENST00000337432.4:c.509dup	p.Asp171ArgfsTer32	p.D171Rfs*32	ENST00000337432	NM_058216.2	170	gta/gTta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0032894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	311	570	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29560085	29560085	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	124	251	0	ENST00000358273.4:c.3562C>T	p.Gln1188Ter	p.Q1188*	ENST00000358273	NM_001042492.2	1188	Caa/Taa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15952272	15952272	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	52	450	0	ENST00000268712.3:c.6423C>G	p.His2141Gln	p.H2141Q	ENST00000268712	NM_006311.3	2141	caC/caG																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3790400	3790400	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0032894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	372	262	0	ENST00000262367.5:c.4133G>C	p.Arg1378Pro	p.R1378P	ENST00000262367	NM_004380.2	1378	cGg/cCg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046509	69046509	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0032894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	191	410	0	ENST00000288368.4:c.3982T>G	p.Leu1328Val	p.L1328V	ENST00000288368	NM_024870.2	1328	Ttg/Gtg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427730	49427732	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0032894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	282	541	0	ENST00000301067.7:c.10756_10758del	p.Lys3586del	p.K3586del	ENST00000301067	NM_003482.3	3586	AAG/-																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107906	30107906	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	189	329	0	ENST00000331968.5:c.901T>C	p.Cys301Arg	p.C301R	ENST00000331968	NM_002742.2	301	Tgc/Cgc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225422504	225422504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	55	455	0	ENST00000264414.4:c.136C>T	p.Arg46Cys	p.R46C	ENST00000264414	NM_003590.4	46	Cgt/Tgt																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665549	138665549	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	136	188	0	ENST00000330315.3:c.16C>A	p.Pro6Thr	p.P6T	ENST00000330315	NM_023067.3	6	Ccc/Acc																																																																															
BCL6	604	MSKCC	GRCh37	3	187444666	187444666	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1141	178	309	0	ENST00000232014.4:c.1561A>C	p.Asn521His	p.N521H	ENST00000232014	NM_001130845.1	521	Aat/Cat																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139829	55139829	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	51	306	0	ENST00000257290.5:c.1490T>C	p.Ile497Thr	p.I497T	ENST00000257290	NM_006206.4	497	aTc/aCc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0032900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	85	306	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587782082		P-0032900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	497	513	1	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0032900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	168	274	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	111	250	1	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143003202	143003202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	162	406	0	ENST00000262992.4:c.2624C>T	p.Ala875Val	p.A875V	ENST00000262992	NM_001101669.1	875	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7573998	7573999	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0032900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	473	557	4	ENST00000269305.4:c.1028_1029delAG	p.Glu343AlafsTer3	p.E343Afs*3	ENST00000269305	NM_001126112.2	343	gAG/g																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862737	9862737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	85	368	0	ENST00000330684.3:c.2566C>T	p.Arg856Trp	p.R856W	ENST00000330684	NM_001134407.1	856	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260775	16260775	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	265	430	1	ENST00000375759.3:c.8040A>T	p.Lys2680Asn	p.K2680N	ENST00000375759	NM_015001.2	2680	aaA/aaT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023213	27023222	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGGCCCTA	GCGGGCCCTA	-			P-0032900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	57	61	0	ENST00000324856.7:c.320_329del	p.Ala107GlyfsTer4	p.A107Gfs*4	ENST00000324856	NM_006015.4	107	GCGGGCCCTAgg/gg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119751	70119752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0032900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	375	449	2	ENST00000245479.2:c.754_755dup	p.Lys253Ter	p.K253*	ENST00000245479	NM_000346.3	251	-/CT																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591946	48591946	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	237	352	0	ENST00000342988.3:c.1109T>G	p.Val370Gly	p.V370G	ENST00000342988	NM_005359.5	370	gTc/gGc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	132	546	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	121	516	0	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524541	176524541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	58	720	0	ENST00000292408.4:c.2273G>A	p.Arg758His	p.R758H	ENST00000292408	NM_213647.1	758	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912654		P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	140	691	0	ENST00000269305.4:c.469G>A	p.Val157Ile	p.V157I	ENST00000269305	NM_001126112.2	157	Gtc/Atc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137328332	137328332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	121	533	1	ENST00000481739.1:c.1261C>T	p.Arg421Cys	p.R421C	ENST00000481739	NM_002957.4	421	Cgc/Tgc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117859878	117859878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	29	237	0	ENST00000297338.2:c.1757G>A	p.Arg586Gln	p.R586Q	ENST00000297338	NM_006265.2	586	cGa/cAa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2112990	2112990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	50	522	0	ENST00000219476.3:c.1379C>T	p.Ala460Val	p.A460V	ENST00000219476	NM_000548.3	460	gCc/gTc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944567	71944567	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	124	511	0	ENST00000298229.2:c.2122+1G>A		p.X708_splice	ENST00000298229	NM_001567.3	708																																																																																
KDM5A	5927	MSKCC	GRCh37	12	402031	402031	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	78	463	0	ENST00000399788.2:c.4760del	p.Lys1587ArgfsTer37	p.K1587Rfs*37	ENST00000399788	NM_001042603.1	1587	aAg/ag																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563060	21563060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	55	674	1	ENST00000382592.4:c.859G>A	p.Ala287Thr	p.A287T	ENST00000382592	NM_014572.2	287	Gcc/Acc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28893590	28893590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	60	363	1	ENST00000282397.4:c.3256G>A	p.Gly1086Arg	p.G1086R	ENST00000282397	NM_002019.4	1086	Gga/Aga																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988389	36988390	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	72	244	0	ENST00000354822.5:c.263dup	p.His90AlafsTer349	p.H90Afs*349	ENST00000354822	NM_001079668.2	88	gtg/gtTg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712797	43712797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	152	683	0	ENST00000382044.4:c.4387C>T	p.Arg1463Cys	p.R1463C	ENST00000382044	NM_001141980.1	1463	Cgt/Tgt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2106685	2106685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	143	648	3	ENST00000219476.3:c.689G>A	p.Cys230Tyr	p.C230Y	ENST00000219476	NM_000548.3	230	tGc/tAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134712	2134712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	41	548	0	ENST00000219476.3:c.4489C>T	p.Pro1497Ser	p.P1497S	ENST00000219476	NM_000548.3	1497	Ccc/Tcc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37649018	37649018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	21	285	0	ENST00000447079.4:c.2123G>A	p.Arg708His	p.R708H	ENST00000447079	NM_015083.1	708	cGt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222826	36222826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	84	726	0	ENST00000222270.7:c.5455G>A	p.Asp1819Asn	p.D1819N	ENST00000222270	NM_014727.1	1819	Gac/Aac																																																																															
RRAS	6237	MSKCC	GRCh37	19	50139022	50139022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	96	718	2	ENST00000246792.3:c.541G>A	p.Glu181Lys	p.E181K	ENST00000246792	NM_006270.3	181	Gag/Aag																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703574	47703574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	138	592	0	ENST00000233146.2:c.2074G>A	p.Gly692Arg	p.G692R	ENST00000233146	NM_000251.2	692	Ggg/Agg																																																																															
KDR	3791	MSKCC	GRCh37	4	55962446	55962446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	33	486	0	ENST00000263923.4:c.2678G>A	p.Gly893Asp	p.G893D	ENST00000263923	NM_002253.2	893	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112173527	112173527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	23	289	0	ENST00000257430.4:c.2236G>A	p.Gly746Ser	p.G746S	ENST00000257430	NM_000038.5	746	Ggc/Agc																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032023	26032023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	64	248	0	ENST00000244661.2:c.266C>T	p.Ala89Val	p.A89V	ENST00000244661	NM_003537.3	89	gCg/gTg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911261	29911261	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3129018		P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	14	211	0	ENST00000376809.5:c.560C>T	p.Thr187Met	p.T187M	ENST00000376809	NM_002116.7	187	aCg/aTg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288833	33288833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	78	356	0	ENST00000374542.5:c.719G>A	p.Cys240Tyr	p.C240Y	ENST00000374542	NM_001141970.1	240	tGt/tAt																																																																															
ABL1	25	MSKCC	GRCh37	9	133759937	133759937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	35	601	0	ENST00000318560.5:c.2260G>A	p.Gly754Arg	p.G754R	ENST00000318560	NM_005157.4	754	Ggg/Agg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223602	53223602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	18	244	0	ENST00000375401.3:c.3757C>T	p.Pro1253Ser	p.P1253S	ENST00000375401	NM_004187.3	1253	Ccg/Tcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	171	440	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	237	587	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175876	112175876	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	41	207	0	ENST00000257430.4:c.4585C>T	p.Gln1529Ter	p.Q1529*	ENST00000257430	NM_000038.5	1529	Cag/Tag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489571	56489571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	279	395	0	ENST00000267101.3:c.2036G>A	p.Arg679Gln	p.R679Q	ENST00000267101	NM_001982.3	679	cGa/cAa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8471048	8471048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	86	385	0	ENST00000356435.5:c.3451C>T	p.Arg1151Cys	p.R1151C	ENST00000356435		1151	Cgc/Tgc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138403604	138403604	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	105	551	0	ENST00000289153.2:c.2178C>G	p.Ile726Met	p.I726M	ENST00000289153	NM_006219.2	726	atC/atG																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112352	115112352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	325	240	0	ENST00000257566.3:c.1388C>T	p.Ala463Val	p.A463V	ENST00000257566	NM_016569.3	463	gCg/gTg																																																																															
CD276	80381	MSKCC	GRCh37	15	73996078	73996078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	245	728	0	ENST00000318443.5:c.812C>T	p.Ser271Phe	p.S271F	ENST00000318443	NM_001024736.1	271	tCc/tTc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347459	89347459	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	168	494	0	ENST00000301030.4:c.5491G>C	p.Asp1831His	p.D1831H	ENST00000301030	NM_001256183.1	1831	Gac/Cac																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10283780	10283780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	189	671	1	ENST00000340748.4:c.706G>A	p.Glu236Lys	p.E236K	ENST00000340748		236	Gaa/Aaa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10283819	10283819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	183	600	0	ENST00000340748.4:c.667G>A	p.Glu223Lys	p.E223K	ENST00000340748		223	Gaa/Aaa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138403515	138403515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	140	551	0	ENST00000289153.2:c.2267C>T	p.Ser756Phe	p.S756F	ENST00000289153	NM_006219.2	756	tCt/tTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831378	72831378	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	140	364	0	ENST00000268489.5:c.5203C>T	p.Gln1735Ter	p.Q1735*	ENST00000268489	NM_006885.3	1735	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	1260	791	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	437	1031	0	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716352	52716352	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	188	758	1	ENST00000322088.6:c.796A>T	p.Lys266Ter	p.K266*	ENST00000322088	NM_014225.5	266	Aag/Tag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436560	110436560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	368	981	2	ENST00000375856.3:c.1841C>T	p.Pro614Leu	p.P614L	ENST00000375856	NM_003749.2	614	cCg/cTg																																																																															
SETD8	387893	MSKCC	GRCh37	12	123874011	123874013	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs780061449		P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	10	78	0	ENST00000330479.4:c.62_64del	p.Ala21del	p.A21del	ENST00000330479	NM_020382.3	14	gaGGCg/gag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812317	212812317	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs143662416		P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	165	481	0	ENST00000342788.4:c.259G>T	p.Val87Leu	p.V87L	ENST00000342788	NM_005235.2	87	Gtg/Ttg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105657	11105657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	356	794	0	ENST00000344626.4:c.1573G>T	p.Glu525Ter	p.E525*	ENST00000344626	NM_003072.3	525	Gag/Tag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11272419	11272419	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	143	700	1	ENST00000361445.4:c.3511T>A	p.Ser1171Thr	p.S1171T	ENST00000361445	NM_004958.3	1171	Tcc/Acc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78444643	78444643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	263	640	0	ENST00000370768.2:c.46G>A	p.Gly16Ser	p.G16S	ENST00000370768	NM_003902.3	16	Ggt/Agt																																																																															
RET	5979	MSKCC	GRCh37	10	43600466	43600466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	282	742	0	ENST00000355710.3:c.692G>T	p.Arg231Leu	p.R231L	ENST00000355710	NM_020975.4	231	cGc/cTc																																																																															
TET1	80312	MSKCC	GRCh37	10	70406112	70406112	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	165	831	0	ENST00000373644.4:c.3626T>A	p.Val1209Glu	p.V1209E	ENST00000373644	NM_030625.2	1209	gTa/gAa																																																																															
TET1	80312	MSKCC	GRCh37	10	70450871	70450871	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	228	681	0	ENST00000373644.4:c.5711T>G	p.Leu1904Arg	p.L1904R	ENST00000373644	NM_030625.2	1904	cTt/cGt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18715635	18715635	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	134	359	0	ENST00000266497.5:c.3468-2A>T		p.X1156_splice	ENST00000266497		1156																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49438295	49438295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	148	701	0	ENST00000301067.7:c.4974G>T	p.Glu1658Asp	p.E1658D	ENST00000301067	NM_003482.3	1658	gaG/gaT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445377	49445377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	255	1290	0	ENST00000301067.7:c.2089C>T	p.Pro697Ser	p.P697S	ENST00000301067	NM_003482.3	697	Ccc/Tcc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30093449	30093449	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	105	653	0	ENST00000331968.5:c.1814C>A	p.Thr605Lys	p.T605K	ENST00000331968	NM_002742.2	605	aCa/aAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591953	48591953	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	82	525	0	ENST00000342988.3:c.1116G>C	p.Arg372Ser	p.R372S	ENST00000342988	NM_005359.5	372	agG/agC																																																																															
STK11	6794	MSKCC	GRCh37	19	1221316	1221317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	358	891	1	ENST00000326873.7:c.839_840insT	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	280	ccc/ccTc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661668	227661668	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	102	645	1	ENST00000305123.5:c.1787G>T	p.Gly596Val	p.G596V	ENST00000305123	NM_005544.2	596	gGg/gTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1264519	1264519	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	101	481	0	ENST00000310581.5:c.2843G>T	p.Ser948Ile	p.S948I	ENST00000310581	NM_198253.2	948	aGc/aTc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755536	57755536	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	167	868	1	ENST00000274289.3:c.251G>T	p.Arg84Leu	p.R84L	ENST00000274289	NM_006622.3	84	cGg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112173499	112173499	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	110	495	0	ENST00000257430.4:c.2208G>T	p.Lys736Asn	p.K736N	ENST00000257430	NM_000038.5	736	aaG/aaT																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149450100	149450100	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	183	952	0	ENST00000286301.3:c.1117C>A	p.Pro373Thr	p.P373T	ENST00000286301	NM_005211.3	373	Ccc/Acc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180605	32180605	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	101	609	1	ENST00000375023.3:c.2522G>T	p.Cys841Phe	p.C841F	ENST00000375023	NM_004557.3	841	tGc/tTc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468102	50468102	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	90	527	0	ENST00000331340.3:c.1337A>T	p.Gln446Leu	p.Q446L	ENST00000331340	NM_006060.4	446	cAg/cTg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70971078	70971078	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	353	973	0	ENST00000276594.2:c.1184-1G>T		p.X395_splice	ENST00000276594	NM_024504.3	395																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8521444	8521444	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	200	845	1	ENST00000356435.5:c.794C>A	p.Pro265His	p.P265H	ENST00000356435		265	cCt/cAt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772828	135772828	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	186	904	0	ENST00000298552.3:c.2795A>T	p.Asp932Val	p.D932V	ENST00000298552	NM_001162426.1	932	gAt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	219	585	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	222	579	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	215	557	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52692244	52692244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	181	448	0	ENST00000394830.3:c.616G>A	p.Glu206Lys	p.E206K	ENST00000394830	NM_018313.4	206	Gaa/Aaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970893	21970905	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTCCTCACCTGAG	GTCCTCACCTGAG	-			P-0023571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	262	719	0	ENST00000304494.5:c.453_457+8del		p.X151_splice	ENST00000304494	NM_000077.4	151																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	58	697	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0023646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	39	863	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40872305	40872305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	39	969	0	ENST00000428826.2:c.650G>A	p.Arg217Gln	p.R217Q	ENST00000428826		217	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031020-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			707	66	308	1	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
JUN	3725	MSKCC	GRCh37	1	59248525	59248525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031020-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			571	42	259	0	ENST00000371222.2:c.218C>T	p.Ser73Leu	p.S73L	ENST00000371222	NM_002228.3	73	tCg/tTg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28626752	28626752	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031020-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			641	38	306	0	ENST00000241453.7:c.544C>G	p.Leu182Val	p.L182V	ENST00000241453	NM_004119.2	182	Ctg/Gtg																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374844	149374844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031020-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			365	21	132	0	ENST00000360632.3:c.250C>T	p.His84Tyr	p.H84Y	ENST00000360632	NM_015472.4	84	Cat/Tat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884476	151884476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031020-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	42	219	1	ENST00000262189.6:c.4879G>A	p.Asp1627Asn	p.D1627N	ENST00000262189	NM_170606.2	1627	Gac/Aac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0032802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	86	454	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs879253911		P-0032802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	178	428	0	ENST00000269305.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000269305	NM_001126112.2	180	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111494	8111495	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTGG			P-0032802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	151	423	0	ENST00000346208.3:c.981_984dup	p.Arg329LeufsTer24	p.R329Lfs*24	ENST00000346208		327	ctc/ctCTGGc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717615	89717616	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	122	276	0	ENST00000371953.3:c.641dup	p.Phe215ValfsTer28	p.F215Vfs*28	ENST00000371953	NM_000314.4	214	cag/cAag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244604	46244604	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	170	367	0	ENST00000334344.6:c.2698C>G	p.Pro900Ala	p.P900A	ENST00000334344	NM_152641.2	900	Cct/Gct																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687120	37687120	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	130	356	0	ENST00000447079.4:c.4024G>C	p.Asp1342His	p.D1342H	ENST00000447079	NM_015083.1	1342	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	30	567	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057706	27057706	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	68	649	0	ENST00000324856.7:c.1414A>G	p.Asn472Asp	p.N472D	ENST00000324856	NM_006015.4	472	Aac/Gac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0032855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	210	454	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423565	88423565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	97	646	0	ENST00000360948.2:c.2270G>T	p.Gly757Val	p.G757V	ENST00000360948	NM_001012338.2	757	gGg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577526	7577526	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	116	676	0	ENST00000269305.4:c.755T>C	p.Leu252Pro	p.L252P	ENST00000269305	NM_001126112.2	252	cTc/cCc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220612	1220612	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	104	601	0	ENST00000326873.7:c.630C>A	p.Cys210Ter	p.C210*	ENST00000326873	NM_000455.4	210	tgC/tgA																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0032855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	40	331	0				ENST00000310581	NM_198253.2																																																																																	
IFNGR1	3459	MSKCC	GRCh37	6	137522134	137522134	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	59	188	0	ENST00000367739.4:c.745A>C	p.Ile249Leu	p.I249L	ENST00000367739	NM_000416.2	249	Att/Ctt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100441	8100442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	128	642	0	ENST00000346208.3:c.417dup	p.Ser140LeufsTer163	p.S140Lfs*163	ENST00000346208		139	tcc/tCcc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0032868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	344	207	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061317	38061317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	336	426	0	ENST00000250448.2:c.672C>A	p.Phe224Leu	p.F224L	ENST00000250448	NM_004496.3	224	ttC/ttA																																																																															
MPL	4352	MSKCC	GRCh37	1	43805149	43805149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	75	466	0	ENST00000372470.3:c.599C>T	p.Pro200Leu	p.P200L	ENST00000372470	NM_005373.2	200	cCt/cTt																																																																															
PARP1	142	MSKCC	GRCh37	1	226567721	226567721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	52	517	0	ENST00000366794.5:c.1445G>A	p.Gly482Glu	p.G482E	ENST00000366794	NM_001618.3	482	gGg/gAg																																																																															
RET	5979	MSKCC	GRCh37	10	43608331	43608331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	61	774	0	ENST00000355710.3:c.1679C>T	p.Pro560Leu	p.P560L	ENST00000355710	NM_020975.4	560	cCc/cTc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63810754	63810754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	270	352	0	ENST00000279873.7:c.841G>A	p.Ala281Thr	p.A281T	ENST00000279873	NM_032199.2	281	Gcc/Acc																																																																															
TET1	80312	MSKCC	GRCh37	10	70406146	70406146	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	36	518	0	ENST00000373644.4:c.3660G>A	p.Trp1220Ter	p.W1220*	ENST00000373644	NM_030625.2	1220	tgG/tgA																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129442	64129442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	55	584	0	ENST00000334205.4:c.874G>A	p.Ala292Thr	p.A292T	ENST00000334205	NM_003942.2	292	Gca/Aca																																																																															
MEN1	4221	MSKCC	GRCh37	11	64574687	64574687	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	296	489	0	ENST00000337652.1:c.803T>C	p.Leu268Pro	p.L268P	ENST00000337652	NM_130803.2	268	cTg/cCg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482351	56482351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	54	500	1	ENST00000267101.3:c.899C>T	p.Ser300Phe	p.S300F	ENST00000267101	NM_001982.3	300	tCc/tTc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56490384	56490384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	49	333	0	ENST00000267101.3:c.2153G>A	p.Gly718Asp	p.G718D	ENST00000267101	NM_001982.3	718	gGt/gAt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495508	56495508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	47	496	0	ENST00000267101.3:c.3698C>T	p.Ala1233Val	p.A1233V	ENST00000267101	NM_001982.3	1233	gCc/gTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133202244	133202244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	50	573	0	ENST00000320574.5:c.6644C>T	p.Thr2215Ile	p.T2215I	ENST00000320574	NM_006231.2	2215	aCc/aTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133220027	133220027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	59	547	0	ENST00000320574.5:c.4410G>A	p.Met1470Ile	p.M1470I	ENST00000320574	NM_006231.2	1470	atG/atA																																																																															
POLE	5426	MSKCC	GRCh37	12	133256601	133256602	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	83	364	0	ENST00000320574.5:c.361_362del	p.Ser121GlnfsTer82	p.S121Qfs*82	ENST00000320574	NM_006231.2	121	TCc/c																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563153	21563153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	371	633	0	ENST00000382592.4:c.766C>T	p.Pro256Ser	p.P256S	ENST00000382592	NM_014572.2	256	Ccg/Tcg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436879	110436879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	67	537	0	ENST00000375856.3:c.1522G>A	p.Gly508Ser	p.G508S	ENST00000375856	NM_003749.2	508	Ggc/Agc																																																																															
MGA	23269	MSKCC	GRCh37	15	41988952	41988952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	29	425	0	ENST00000219905.7:c.1744G>A	p.Asp582Asn	p.D582N	ENST00000219905	NM_001164273.1	582	Gac/Aac																																																																															
TSC2	7249	MSKCC	GRCh37	16	2130373	2130373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	58	553	0	ENST00000219476.3:c.3605C>T	p.Pro1202Leu	p.P1202L	ENST00000219476	NM_000548.3	1202	cCc/cTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827969	72827969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	72	736	0	ENST00000268489.5:c.8612C>T	p.Pro2871Leu	p.P2871L	ENST00000268489	NM_006885.3	2871	cCc/cTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832355	72832355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	57	491	0	ENST00000268489.5:c.4226C>T	p.Ala1409Val	p.A1409V	ENST00000268489	NM_006885.3	1409	gCc/gTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993300	72993300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	47	746	0	ENST00000268489.5:c.745G>A	p.Gly249Ser	p.G249S	ENST00000268489	NM_006885.3	249	Ggt/Agt																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108239	8108239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	53	546	1	ENST00000585124.1:c.985G>A	p.Ala329Thr	p.A329T	ENST00000585124	NM_004217.3	329	Gcc/Acc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619277	37619277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	33	385	1	ENST00000447079.4:c.953C>T	p.Ser318Phe	p.S318F	ENST00000447079	NM_015083.1	318	tCt/tTt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37873598	37873598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	64	631	0	ENST00000269571.5:c.1763C>T	p.Ala588Val	p.A588V	ENST00000269571		588	gCc/gTc																																																																															
RARA	5914	MSKCC	GRCh37	17	38487508	38487508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	38	437	0	ENST00000254066.5:c.38G>A	p.Gly13Asp	p.G13D	ENST00000254066	NM_000964.3	13	gGc/gAc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216629	2216629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	54	690	0	ENST00000398665.3:c.2273C>T	p.Pro758Leu	p.P758L	ENST00000398665	NM_032482.2	758	cCg/cTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7125503	7125503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	55	529	0	ENST00000302850.5:c.3049G>A	p.Glu1017Lys	p.E1017K	ENST00000302850	NM_000208.2	1017	Gag/Aag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10249152	10249152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	59	592	1	ENST00000340748.4:c.4030G>A	p.Val1344Met	p.V1344M	ENST00000340748		1344	Gtg/Atg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17946809	17946809	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1257320432		P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	53	656	1	ENST00000458235.1:c.1838G>A	p.Arg613Gln	p.R613Q	ENST00000458235	NM_000215.3	613	cGa/cAa																																																																															
UPF1	5976	MSKCC	GRCh37	19	18974278	18974278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	62	492	0	ENST00000262803.5:c.2632G>A	p.Ala878Thr	p.A878T	ENST00000262803	NM_002911.3	878	Gca/Aca																																																																															
UPF1	5976	MSKCC	GRCh37	19	18974411	18974411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	34	387	0	ENST00000262803.5:c.2765C>T	p.Thr922Ile	p.T922I	ENST00000262803	NM_002911.3	922	aCt/aTt																																																																															
CIC	23152	MSKCC	GRCh37	19	42796745	42796745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	56	645	0	ENST00000575354.2:c.3203G>A	p.Gly1068Asp	p.G1068D	ENST00000575354	NM_015125.3	1068	gGt/gAt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523052	25523052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	54	590	1	ENST00000264709.3:c.133G>A	p.Ala45Thr	p.A45T	ENST00000264709	NM_175629.2	45	Gca/Aca																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033729	48033729	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	33	297	0	ENST00000234420.5:c.3940C>T	p.Gln1314Ter	p.Q1314*	ENST00000234420	NM_000179.2	1314	Caa/Taa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248612	212248612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	38	552	0	ENST00000342788.4:c.3655G>A	p.Ala1219Thr	p.A1219T	ENST00000342788	NM_005235.2	1219	Gct/Act																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267219	41267219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	39	409	0	ENST00000349496.5:c.803G>A	p.Gly268Glu	p.G268E	ENST00000349496	NM_001904.3	268	gGa/gAa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275654	41275654	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	44	480	0	ENST00000349496.5:c.1549C>T	p.Leu517Phe	p.L517F	ENST00000349496	NM_001904.3	517	Ctt/Ttt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498438	89498438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	40	357	0	ENST00000336596.2:c.2410G>A	p.Ala804Thr	p.A804T	ENST00000336596	NM_005233.5	804	Gcc/Acc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960089	134960089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	50	585	1	ENST00000398015.3:c.2446G>A	p.Glu816Lys	p.E816K	ENST00000398015	NM_004441.4	816	Gaa/Aaa																																																																															
ATR	545	MSKCC	GRCh37	3	142281495	142281495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	54	589	0	ENST00000350721.4:c.749G>A	p.Ser250Asn	p.S250N	ENST00000350721	NM_001184.3	250	aGc/aAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178942603	178942603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	35	251	1	ENST00000263967.3:c.2410G>A	p.Gly804Arg	p.G804R	ENST00000263967	NM_006218.2	804	Ggg/Agg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980628	1980628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	27	333	0	ENST00000382891.5:c.4090G>A	p.Gly1364Ser	p.G1364S	ENST00000382891	NM_133335.3	1364	Ggc/Agc																																																																															
KIT	3815	MSKCC	GRCh37	4	55594057	55594057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	49	452	2	ENST00000288135.5:c.1843G>A	p.Asp615Asn	p.D615N	ENST00000288135	NM_000222.2	615	Gat/Aat																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244197	153244197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	46	436	1	ENST00000281708.4:c.1960G>A	p.Gly654Ser	p.G654S	ENST00000281708	NM_033632.3	654	Ggt/Agt																																																																															
TERT	7015	MSKCC	GRCh37	5	1294598	1294598	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200843534		P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	36	307	0	ENST00000310581.5:c.403G>A	p.Gly135Arg	p.G135R	ENST00000310581	NM_198253.2	135	Ggg/Agg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520306	176520306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	56	559	1	ENST00000292408.4:c.1225C>T	p.Leu409Phe	p.L409F	ENST00000292408	NM_213647.1	409	Ctc/Ttc																																																																															
IRF4	3662	MSKCC	GRCh37	6	401646	401646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	38	407	0	ENST00000380956.4:c.968G>A	p.Gly323Glu	p.G323E	ENST00000380956	NM_001195286.1	323	gGg/gAg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956610	93956610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	26	420	0	ENST00000369303.4:c.2626G>A	p.Glu876Lys	p.E876K	ENST00000369303	NM_004440.3	876	Gag/Aag																																																																															
FYN	2534	MSKCC	GRCh37	6	112041059	112041059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	25	441	1	ENST00000368678.4:c.196G>A	p.Gly66Ser	p.G66S	ENST00000368678		66	Ggt/Agt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55210074	55210074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	66	561	0	ENST00000275493.2:c.184C>T	p.Leu62Phe	p.L62F	ENST00000275493	NM_005228.3	62	Ctt/Ttt																																																																															
MET	4233	MSKCC	GRCh37	7	116435966	116435966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	53	548	1	ENST00000397752.3:c.3961C>T	p.His1321Tyr	p.H1321Y	ENST00000397752	NM_000245.2	1321	Cac/Tac																																																																															
RHEB	6009	MSKCC	GRCh37	7	151164230	151164230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	17	195	0	ENST00000262187.5:c.530G>A	p.Gly177Asp	p.G177D	ENST00000262187	NM_005614.3	177	gGc/gAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956748	68956748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	63	561	0	ENST00000288368.4:c.866C>T	p.Thr289Ile	p.T289I	ENST00000288368	NM_024870.2	289	aCa/aTa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635254	87635254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	48	401	0	ENST00000277120.3:c.2306C>T	p.Pro769Leu	p.P769L	ENST00000277120		769	cCc/cTc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250196	110250196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	63	546	0	ENST00000374672.4:c.479C>T	p.Pro160Leu	p.P160L	ENST00000374672	NM_004235.4	160	cCg/cTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395300	139395300	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	52	518	0	ENST00000277541.6:c.5639-1G>A		p.X1880_splice	ENST00000277541	NM_017617.3	1880																																																																																
ARAF	369	MSKCC	GRCh37	X	47422398	47422398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	34	193	0	ENST00000377045.4:c.32G>A	p.Gly11Glu	p.G11E	ENST00000377045	NM_001654.4	11	gGg/gAg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53240692	53240692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	40	274	0	ENST00000375401.3:c.1388C>T	p.Thr463Ile	p.T463I	ENST00000375401	NM_004187.3	463	aCc/aTc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197837	123197837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	49	235	0	ENST00000218089.9:c.1961G>A	p.Arg654Lys	p.R654K	ENST00000218089	NM_001042749.1	654	aGa/aAa																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112919912	112919912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	16	125	0	ENST00000351677.2:c.1127C>T	p.Ala376Val	p.A376V	ENST00000351677	NM_002834.3	376	gCt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0032874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	89	466	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0032874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	188	421	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
AC004906.3	0	MSKCC	GRCh37	7	2984143	2984143	+	splice_donor_variant,non_coding_transcript_variant	Splice_Site	SNP	G	G	C			P-0032874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	74	327	0	ENST00000423194.1:n.474+1G>C		p.X158_splice	ENST00000423194		158																																																																																
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0032875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	99	653	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0032875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	30	321	1	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112888273	112888273	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	42	378	0	ENST00000351677.2:c.289G>C	p.Glu97Gln	p.E97Q	ENST00000351677	NM_002834.3	97	Gag/Cag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484197	8484198	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0032875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	72	497	0	ENST00000356435.5:c.3334_3335del	p.Pro1112CysfsTer18	p.P1112Cfs*18	ENST00000356435		1112	CCt/t																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	19	446	1	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs587782289		P-0016662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	29	458	0	ENST00000269305.4:c.706T>A	p.Tyr236Asn	p.Y236N	ENST00000269305	NM_001126112.2	236	Tac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0030642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	154	549	0	ENST00000269305.4:c.782+1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
NTRK1	4914	MSKCC	GRCh37	1	156841422	156841422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	20	398	0	ENST00000524377.1:c.725G>A	p.Gly242Glu	p.G242E	ENST00000524377	NM_002529.3	242	gGg/gAg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17125855	17125855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	94	584	2	ENST00000285071.4:c.739G>A	p.Asp247Asn	p.D247N	ENST00000285071	NM_144997.5	247	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0032644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	126	697	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0032644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	109	458	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0032645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	48	474	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044850	47044850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	72	384	1	ENST00000329236.7:c.1942C>T	p.Arg648Ter	p.R648*	ENST00000329236	NM_001204466.1	648	Cga/Tga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600042	10600042	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs148641376		P-0032701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	24	677	0	ENST00000171111.5:c.1534G>A	p.Val512Ile	p.V512I	ENST00000171111	NM_203500.1	512	Gtc/Atc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0032701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	12	562	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727483	66727483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	11	496	0	ENST00000307102.5:c.199G>A	p.Asp67Asn	p.D67N	ENST00000307102	NM_002755.3	67	Gac/Aac																																																																															
ERF	2077	MSKCC	GRCh37	19	42754535	42754535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	29	869	1	ENST00000222329.4:c.205G>A	p.Val69Ile	p.V69I	ENST00000222329	NM_006494.2	69	Gtt/Att																																																																															
RB1	5925	MSKCC	GRCh37	13	49050932	49050933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	15	284	0	ENST00000267163.4:c.2622dup	p.Leu875ThrfsTer4	p.L875Tfs*4	ENST00000267163	NM_000321.2	872	-/A																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245318	46245318	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	19	466	0	ENST00000334344.6:c.3416delG	p.Gly1139GlufsTer17	p.G1139Efs*17	ENST00000334344	NM_152641.2	1138	Ggg/gg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913831	32913831	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	18	444	0	ENST00000380152.3:c.5339A>G	p.Glu1780Gly	p.E1780G	ENST00000380152		1780	gAa/gGa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11094954	11094954	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	24	767	0	ENST00000344626.4:c.127A>T	p.Met43Leu	p.M43L	ENST00000344626	NM_003072.3	43	Atg/Ttg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630338	47630355	+	frameshift_variant	Frame_Shift_Del	DEL	TGCAGCCGAAGGAGACGC	TGCAGCCGAAGGAGACGC	ACGG			P-0032701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	19	609	2	ENST00000233146.2:c.8_25delinsACGG	p.Val3AspfsTer74	p.V3Dfs*74	ENST00000233146	NM_000251.2	3	gTGCAGCCGAAGGAGACGCtg/gACGGtg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807542	1807542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	22	665	3	ENST00000260795.2:c.1711C>T	p.Arg571Trp	p.R571W	ENST00000260795		571	Cgg/Tgg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526993	31526993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	21	700	0	ENST00000344624.3:c.47G>A	p.Arg16Gln	p.R16Q	ENST00000344624		16	cGa/cAa																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0032673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	322	595	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68856020	68856020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	73	583	0	ENST00000261769.5:c.1828C>T	p.Gln610Ter	p.Q610*	ENST00000261769	NM_004360.3	610	Cag/Tag																																																																															
CDH1	999	MSKCC	GRCh37	16	68771344	68771344	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	30	271	0	ENST00000261769.5:c.26C>A	p.Ser9Ter	p.S9*	ENST00000261769	NM_004360.3	9	tCg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578371	7578371	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs776167460		P-0032673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	151	748	0	ENST00000269305.4:c.559G>A	p.Gly187Ser	p.G187S	ENST00000269305	NM_001126112.2	187	Ggt/Agt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32944614	32944614	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	93	764	1	ENST00000380152.3:c.8407C>A	p.Leu2803Met	p.L2803M	ENST00000380152		2803	Ctg/Atg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32944624	32944624	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	100	746	0	ENST00000380152.3:c.8417C>A	p.Ser2806Ter	p.S2806*	ENST00000380152		2806	tCa/tAa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998913	11998913	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	81	263	1	ENST00000353533.5:c.415del	p.Glu139LysfsTer13	p.E139Kfs*13	ENST00000353533	NM_003010.3	139	Gaa/aa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218849	36218849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	169	750	0	ENST00000222270.7:c.4460G>A	p.Arg1487His	p.R1487H	ENST00000222270	NM_014727.1	1487	cGc/cAc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138375052	138375052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	58	489	0	ENST00000289153.2:c.3007C>T	p.Leu1003Phe	p.L1003F	ENST00000289153	NM_006219.2	1003	Ctc/Ttc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250104	110250104	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	67	741	0	ENST00000374672.4:c.571A>T	p.Asn191Tyr	p.N191Y	ENST00000374672	NM_004235.4	191	Aac/Tac																																																																															
STAG2	10735	MSKCC	GRCh37	X	123184154	123184154	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	50	430	0	ENST00000218089.9:c.1012G>T	p.Asp338Tyr	p.D338Y	ENST00000218089	NM_001042749.1	338	Gat/Tat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	143	249	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0006671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	330	384	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0006671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	204	431	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660508	227660508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	31	189	1	ENST00000305123.5:c.2947C>T	p.Pro983Ser	p.P983S	ENST00000305123	NM_005544.2	983	Ccc/Tcc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200001	128200001	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	68	428	0	ENST00000341105.2:c.1304G>T	p.Gly435Val	p.G435V	ENST00000341105	NM_032638.4	435	gGa/gTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542642	187542642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1193	76	566	0	ENST00000441802.2:c.5098G>A	p.Glu1700Lys	p.E1700K	ENST00000441802	NM_005245.3	1700	Gaa/Aaa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86679544	86679544	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	35	293	0	ENST00000274376.6:c.2705T>C	p.Leu902Pro	p.L902P	ENST00000274376	NM_002890.2	902	cTt/cCt																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020734	26020734	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1781	119	817	0	ENST00000357647.3:c.17A>T	p.Gln6Leu	p.Q6L	ENST00000357647	NM_003529.2	6	cAa/cTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485234	8485234	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	60	458	0	ENST00000356435.5:c.3146C>A	p.Pro1049His	p.P1049H	ENST00000356435		1049	cCt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443490	49443490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	55	301	1	ENST00000301067.7:c.3881C>A	p.Ser1294Tyr	p.S1294Y	ENST00000301067	NM_003482.3	1294	tCc/tAc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514499	103514499	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	40	259	0	ENST00000355739.4:c.1000G>T	p.Glu334Ter	p.E334*	ENST00000355739	NM_000123.3	334	Gag/Tag																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103520541	103520541	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs772219063		P-0009110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1156	68	508	1	ENST00000355739.4:c.2612G>T	p.Cys871Phe	p.C871F	ENST00000355739	NM_000123.3	871	tGt/tTt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225398	2225398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	57	390	0	ENST00000326181.6:c.1483G>T	p.Gly495Cys	p.G495C	ENST00000326181	NM_032271.2	495	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576853	7576853	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs11575996		P-0009110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	126	370	0	ENST00000269305.4:c.993G>T	p.Gln331His	p.Q331H	ENST00000269305	NM_001126112.2	331	caG/caT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602340	10602340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	90	483	0	ENST00000171111.5:c.1238G>A	p.Arg413His	p.R413H	ENST00000171111	NM_203500.1	413	cGt/cAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121151	11121151	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1153	86	525	0	ENST00000344626.4:c.2218G>T	p.Glu740Ter	p.E740*	ENST00000344626	NM_003072.3	740	Gag/Tag																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909559	50909559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1513	104	608	0	ENST00000440232.2:c.1363G>T	p.Val455Leu	p.V455L	ENST00000440232	NM_002691.3	455	Gtg/Ttg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739036	40739036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	48	333	0	ENST00000373198.4:c.3248G>C	p.Gly1083Ala	p.G1083A	ENST00000373198	NM_133170.3	1083	gGc/gCc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295810	212295810	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	79	392	0	ENST00000342788.4:c.2503del	p.Glu835LysfsTer16	p.E835Kfs*16	ENST00000342788	NM_005235.2	835	Gaa/aa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41223028	41223029	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0009110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1503	151	611	0	ENST00000357654.3:c.4902_4903delinsTT	p.Arg1634_Glu1635delinsSerTer	p.R1634_E1635delinsS*	ENST00000357654	NM_007294.3	1634	agGGag/agTTag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0013145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	331	668	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
CDH1	999	MSKCC	GRCh37	16	68856122	68856122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	251	558	0	ENST00000261769.5:c.1930G>A	p.Asp644Asn	p.D644N	ENST00000261769	NM_004360.3	644	Gac/Aac																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591051	67591072	+	protein_altering_variant	In_Frame_Del	DEL	CTTGAAGAAGCAGGCAGCTGAG	CTTGAAGAAGCAGGCAGCTGAG	T			P-0013145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	109	297	0	ENST00000274335.5:c.1644_1665delinsT	p.Leu549_Glu555del	p.L549_E555del	ENST00000274335		548	gaCTTGAAGAAGCAGGCAGCTGAG/gaT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0026821-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			509	329	692	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976742	2976742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026821-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	63	796	1	ENST00000396946.4:c.1270C>T	p.Arg424Trp	p.R424W	ENST00000396946	NM_032415.4	424	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	56	385	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	41	626	0	ENST00000269305.4:c.503A>T	p.His168Leu	p.H168L	ENST00000269305	NM_001126112.2	168	cAc/cTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057685	27057685	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	45	622	0	ENST00000324856.7:c.1393C>T	p.Gln465Ter	p.Q465*	ENST00000324856	NM_006015.4	465	Cag/Tag																																																																															
CIC	23152	MSKCC	GRCh37	19	42795612	42795612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	65	807	0	ENST00000575354.2:c.2692C>T	p.Pro898Ser	p.P898S	ENST00000575354	NM_015125.3	898	Ccc/Tcc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356160	66356160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	71	468	0	ENST00000273854.3:c.1337G>T	p.Gly446Val	p.G446V	ENST00000273854	NM_004439.5	446	gGa/gTa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239954	53239954	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	64	638	0	ENST00000375401.3:c.1487G>C	p.Gly496Ala	p.G496A	ENST00000375401	NM_004187.3	496	gGc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs878854073		P-0030311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	193	327	0	ENST00000269305.4:c.673-1G>A		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71945418	71945422	+	frameshift_variant	Frame_Shift_Del	DEL	TCTAC	TCTAC	-			P-0030370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	159	569	0	ENST00000298229.2:c.2311_2315del	p.Ser771LeufsTer10	p.S771Lfs*10	ENST00000298229	NM_001567.3	769	tTCTAC/t																																																																															
CDH1	999	MSKCC	GRCh37	16	68867255	68867256	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	173	486	0	ENST00000261769.5:c.2503dup	p.Tyr835LeufsTer2	p.Y835Lfs*2	ENST00000261769	NM_004360.3	834	-/T																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			277	98	201	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954172	32954172	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			488	134	359	0	ENST00000380152.3:c.9146A>G	p.Tyr3049Cys	p.Y3049C	ENST00000380152		3049	tAc/tGc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89383342	89383342	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0030465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	41	504	2	ENST00000301030.4:c.86del	p.Lys29ArgfsTer8	p.K29Rfs*8	ENST00000301030	NM_001256183.1	29	aAg/ag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15989699	15989699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	23	326	0	ENST00000268712.3:c.3074C>T	p.Pro1025Leu	p.P1025L	ENST00000268712	NM_006311.3	1025	cCg/cTg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47709917	47709917	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0030465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	22	424	0	ENST00000233146.2:c.2635-1G>A		p.X879_splice	ENST00000233146	NM_000251.2	879																																																																																
TET2	54790	MSKCC	GRCh37	4	106155680	106155680	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	26	437	0	ENST00000380013.4:c.581A>T	p.Asp194Val	p.D194V	ENST00000380013	NM_001127208.2	194	gAc/gTc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522740	67522741	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	19	288	0	ENST00000274335.5:c.244dupA	p.Ile82AsnfsTer24	p.I82Nfs*24	ENST00000274335		79	-/A																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486247	8486247	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139171396		P-0030465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	28	351	0	ENST00000356435.5:c.2570G>A	p.Arg857His	p.R857H	ENST00000356435		857	cGt/cAt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	192	466	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
JUN	3725	MSKCC	GRCh37	1	59248550	59248550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	120	606	0	ENST00000371222.2:c.193G>T	p.Asp65Tyr	p.D65Y	ENST00000371222	NM_002228.3	65	Gac/Tac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557353	187557353	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	69	481	0	ENST00000441802.2:c.4009T>G	p.Ser1337Ala	p.S1337A	ENST00000441802	NM_005245.3	1337	Tca/Gca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0030565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	121	344	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602340	10602340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	400	664	0	ENST00000171111.5:c.1238G>T	p.Arg413Leu	p.R413L	ENST00000171111	NM_203500.1	413	cGt/cTt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52712520	52712520	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	137	334	0	ENST00000394830.3:c.232C>T	p.Arg78Ter	p.R78*	ENST00000394830	NM_018313.4	78	Cga/Tga																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714601	52714601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	300	494	0	ENST00000322088.6:c.359C>T	p.Ser120Leu	p.S120L	ENST00000322088	NM_014225.5	120	tCg/tTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466569	120466569	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	108	428	0	ENST00000256646.2:c.4550A>T	p.His1517Leu	p.H1517L	ENST00000256646	NM_024408.3	1517	cAc/cTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49422940	49422940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	157	526	0	ENST00000301067.7:c.14155G>A	p.Ala4719Thr	p.A4719T	ENST00000301067	NM_003482.3	4719	Gcc/Acc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220494	1220506	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	GCGTGGCCGAGGT	GCGTGGCCGAGGT	ATA			P-0030565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	313	515	3	ENST00000326873.7:c.587_597+2delinsATA		p.X196_splice	ENST00000326873	NM_000455.4	196																																																																																
DOT1L	84444	MSKCC	GRCh37	19	2222458	2222458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	293	439	2	ENST00000398665.3:c.3290C>T	p.Pro1097Leu	p.P1097L	ENST00000398665	NM_032482.2	1097	cCc/cTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272297	15272297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	335	563	0	ENST00000263388.2:c.6142G>A	p.Ala2048Thr	p.A2048T	ENST00000263388	NM_000435.2	2048	Gcc/Acc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753081	57753081	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	123	357	0	ENST00000274289.3:c.935C>G	p.Ala312Gly	p.A312G	ENST00000274289	NM_006622.3	312	gCt/gGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	194	469	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807537	1807537	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146672976		P-0030701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	182	549	0	ENST00000260795.2:c.1706C>T	p.Ala569Val	p.A569V	ENST00000260795		569	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0030701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	58	339	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	350	713	0	ENST00000269305.4:c.613T>C	p.Tyr205His	p.Y205H	ENST00000269305	NM_001126112.2	205	Tat/Cat																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176329	24176329	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	193	645	0	ENST00000263121.7:c.1120C>T	p.Arg374Trp	p.R374W	ENST00000263121	NM_003073.3	374	Cgg/Tgg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50827561	50827561	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	271	534	0	ENST00000398568.2:c.2446A>G	p.Thr816Ala	p.T816A	ENST00000398568	NM_001042412.1	816	Acc/Gcc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347347	89347347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	78	773	0	ENST00000301030.4:c.5603C>A	p.Pro1868Gln	p.P1868Q	ENST00000301030	NM_001256183.1	1868	cCa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112173817	112173820	+	frameshift_variant	Frame_Shift_Del	DEL	TAGT	TAGT	-			P-0030701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	255	515	0	ENST00000257430.4:c.2527_2530del	p.Ser843LeufsTer17	p.S843Lfs*17	ENST00000257430	NM_000038.5	842	gaTAGT/ga																																																																															
STAG2	10735	MSKCC	GRCh37	X	123179114	123179114	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	261	310	0	ENST00000218089.9:c.563A>G	p.Tyr188Cys	p.Y188C	ENST00000218089	NM_001042749.1	188	tAt/tGt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120457996	120457996	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	68	448	1	ENST00000256646.2:c.7349G>T	p.Gly2450Val	p.G2450V	ENST00000256646	NM_024408.3	2450	gGa/gTa																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741883	17741883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	18	37	0	ENST00000250003.3:c.554C>A	p.Pro185His	p.P185H	ENST00000250003	NM_002478.4	185	cCc/cAc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94169065	94169065	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0030893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	29	321	0	ENST00000323929.3:c.1927G>T	p.Val643Leu	p.V643L	ENST00000323929	NM_005591.3	643	Gtg/Ttg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28931779	28931779	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	100	371	1	ENST00000282397.4:c.2160A>T	p.Arg720Ser	p.R720S	ENST00000282397	NM_002019.4	720	agA/agT																																																																															
CTCF	10664	MSKCC	GRCh37	16	67663299	67663300	+	splice_acceptor_variant	Splice_Site	DNP	AG	AG	TT			P-0030893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	67	379	0	ENST00000264010.4:c.1702-2_1702-1delinsTT		p.X568_splice	ENST00000264010	NM_006565.3	568																																																																																
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0030893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	191	591	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29556993	29556993	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0030893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	22	149	0	ENST00000358273.4:c.2990+1G>A		p.X997_splice	ENST00000358273	NM_001042492.2	997																																																																																
NF1	4763	MSKCC	GRCh37	17	29663772	29663773	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	224	523	0	ENST00000358273.4:c.6269dup	p.Asn2091GlnfsTer5	p.N2091Qfs*5	ENST00000358273	NM_001042492.2	2089	-/T																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602289	10602289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	156	504	0	ENST00000171111.5:c.1289G>A	p.Gly430Asp	p.G430D	ENST00000171111	NM_203500.1	430	gGc/gAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161988	47161988	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	52	369	0	ENST00000409792.3:c.4138A>T	p.Thr1380Ser	p.T1380S	ENST00000409792	NM_014159.6	1380	Act/Tct																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468192	50468192	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	52	496	0	ENST00000331340.3:c.1427T>A	p.Met476Lys	p.M476K	ENST00000331340	NM_006060.4	476	aTg/aAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			602	94	710	2	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			405	19	398	0	ENST00000397062.3:c.101G>C	p.Arg34Pro	p.R34P	ENST00000397062	NM_006164.4	34	cGa/cCa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64571924	64571924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			889	110	945	0	ENST00000337652.1:c.1730C>T	p.Ser577Leu	p.S577L	ENST00000337652	NM_130803.2	577	tCg/tTg																																																																															
ETV6	2120	MSKCC	GRCh37	12	11992142	11992142	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	42	392	0	ENST00000396373.4:c.232T>A	p.Ser78Thr	p.S78T	ENST00000396373	NM_001987.4	78	Tct/Act																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440141	49440141	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			539	77	580	0	ENST00000301067.7:c.4485C>A	p.Tyr1495Ter	p.Y1495*	ENST00000301067	NM_003482.3	1495	taC/taA																																																																															
TERT	7015	MSKCC	GRCh37	5	1293884	1293884	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			864	103	891	0	ENST00000310581.5:c.1117C>G	p.Pro373Ala	p.P373A	ENST00000310581	NM_198253.2	373	Cca/Gca																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39002738	39002738	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			327	35	376	0	ENST00000357387.3:c.291del	p.Glu98LysfsTer24	p.E98Kfs*24	ENST00000357387	NM_152756.3	97	aaA/aa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372273	55372273	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			472	87	600	0	ENST00000297316.4:c.963C>A	p.His321Gln	p.H321Q	ENST00000297316	NM_022454.3	321	caC/caA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0031245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	103	485	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	166	856	3	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713559	30713559	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	92	580	0	ENST00000359013.4:c.959C>G	p.Ser320Ter	p.S320*	ENST00000359013	NM_001024847.2	320	tCa/tGa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604736	48604736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	106	541	0	ENST00000342988.3:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000342988	NM_005359.5	520	Gaa/Taa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129377	2129377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	138	709	0	ENST00000219476.3:c.3232C>T	p.Arg1078Trp	p.R1078W	ENST00000219476	NM_000548.3	1078	Cgg/Tgg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87317275	87317275	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	141	525	0	ENST00000277120.3:c.300T>G	p.Asp100Glu	p.D100E	ENST00000277120		100	gaT/gaG																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120483254	120483254	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	53	593	0	ENST00000256646.2:c.3107A>G	p.Asn1036Ser	p.N1036S	ENST00000256646	NM_024408.3	1036	aAt/aGt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111118	193111118	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	62	583	0	ENST00000367435.3:c.651G>T	p.Glu217Asp	p.E217D	ENST00000367435	NM_024529.4	217	gaG/gaT																																																																															
RET	5979	MSKCC	GRCh37	10	43609104	43609104	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	145	818	0	ENST00000355710.3:c.1860C>A	p.Cys620Ter	p.C620*	ENST00000355710	NM_020975.4	620	tgC/tgA																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118347657	118347657	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	114	621	1	ENST00000534358.1:c.3294G>A	p.Trp1098Ter	p.W1098*	ENST00000534358	NM_005933.3	1098	tgG/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	268	591	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
REL	5966	MSKCC	GRCh37	2	61149438	61149438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	47	532	0	ENST00000295025.8:c.1628G>T	p.Ser543Ile	p.S543I	ENST00000295025	NM_002908.2	543	aGt/aTt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851595	134851595	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	61	647	0	ENST00000398015.3:c.1001A>T	p.Asn334Ile	p.N334I	ENST00000398015	NM_004441.4	334	aAt/aTt																																																																															
ATR	545	MSKCC	GRCh37	3	142279177	142279177	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	63	730	0	ENST00000350721.4:c.1469T>C	p.Leu490Ser	p.L490S	ENST00000350721	NM_001184.3	490	tTa/tCa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526390	31526390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	170	974	1	ENST00000344624.3:c.650G>T	p.Ser217Ile	p.S217I	ENST00000344624		217	aGt/aTt																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946195	13946195	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	231	635	0	ENST00000405192.2:c.901C>G	p.Arg301Gly	p.R301G	ENST00000405192	NM_001163147.1	301	Cgg/Ggg																																																																															
NBN	4683	MSKCC	GRCh37	8	90971011	90971011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	47	545	0	ENST00000265433.3:c.1066G>A	p.Ala356Thr	p.A356T	ENST00000265433	NM_002485.4	356	Gcc/Acc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410915	63410915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	59	758	0	ENST00000330258.3:c.2252C>A	p.Pro751His	p.P751H	ENST00000330258	NM_152424.3	751	cCt/cAt																																																																															
BTK	695	MSKCC	GRCh37	X	100625028	100625028	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	119	738	2	ENST00000308731.7:c.349A>T	p.Thr117Ser	p.T117S	ENST00000308731	NM_000061.2	117	Act/Tct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0031862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	87	584	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0031862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	211	679	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68771344	68771344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	87	306	0	ENST00000261769.5:c.26C>T	p.Ser9Leu	p.S9L	ENST00000261769	NM_004360.3	9	tCg/tTg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36941189	36941189	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	149	601	0	ENST00000361632.4:c.150G>C	p.Gln50His	p.Q50H	ENST00000361632		50	caG/caC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152009018	152009018	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	88	312	0	ENST00000262189.6:c.604C>T	p.Gln202Ter	p.Q202*	ENST00000262189	NM_170606.2	202	Cag/Tag																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162233	38162233	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2179	120	354	0	ENST00000317025.8:c.2483C>G	p.Ser828Cys	p.S828C	ENST00000317025	NM_023034.1	828	tCt/tGt																																																																															
SDHB	6390	MSKCC	GRCh37	1	17359597	17359597	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	227	491	0	ENST00000375499.3:c.244G>T	p.Glu82Ter	p.E82*	ENST00000375499	NM_003000.2	82	Gaa/Taa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175996780	175996780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	116	442	0	ENST00000367669.3:c.1657G>A	p.Glu553Lys	p.E553K	ENST00000367669	NM_022457.5	553	Gag/Aag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43767884	43767884	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	105	297	0	ENST00000382044.4:c.964G>C	p.Asp322His	p.D322H	ENST00000382044	NM_001141980.1	322	Gat/Cat																																																																															
SPOP	8405	MSKCC	GRCh37	17	47699410	47699410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	89	322	0	ENST00000347630.2:c.98C>T	p.Ser33Phe	p.S33F	ENST00000347630	NM_001007230.1	33	tCc/tTc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25990467	25990467	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	91	418	0	ENST00000435504.4:c.760G>C	p.Glu254Gln	p.E254Q	ENST00000435504		254	Gag/Cag																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413661	138413661	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	105	370	0	ENST00000289153.2:c.1859G>C	p.Arg620Pro	p.R620P	ENST00000289153	NM_006219.2	620	cGa/cCa																																																																															
ATRX	546	MSKCC	GRCh37	X	76938311	76938311	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	158	613	0	ENST00000373344.5:c.2437G>C	p.Glu813Gln	p.E813Q	ENST00000373344	NM_000489.3	813	Gag/Cag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11269392	11269392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	265	428	0	ENST00000361445.4:c.3778G>A	p.Val1260Ile	p.V1260I	ENST00000361445	NM_004958.3	1260	Gtc/Atc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254839	16254839	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	160	323	0	ENST00000375759.3:c.2104C>T	p.Arg702Ter	p.R702*	ENST00000375759	NM_015001.2	702	Cga/Tga																																																																															
MPL	4352	MSKCC	GRCh37	1	43804359	43804359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	295	312	1	ENST00000372470.3:c.359G>A	p.Arg120Gln	p.R120Q	ENST00000372470	NM_005373.2	120	cGg/cAg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120461980	120461980	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	236	400	0	ENST00000256646.2:c.5736T>A	p.Cys1912Ter	p.C1912*	ENST00000256646	NM_024408.3	1912	tgT/tgA																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518503	204518503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	125	263	0	ENST00000367182.3:c.1166G>A	p.Cys389Tyr	p.C389Y	ENST00000367182	NM_001278516.1	389	tGc/tAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100420	8100420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	278	499	1	ENST00000346208.3:c.394G>A	p.Val132Ile	p.V132I	ENST00000346208		132	Gtc/Atc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63845561	63845565	+	frameshift_variant	Frame_Shift_Del	DEL	AACAA	AACAA	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	90	139	0	ENST00000279873.7:c.1307_1311del	p.Thr436SerfsTer10	p.T436Sfs*10	ENST00000279873	NM_032199.2	434	AACAAa/a																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	134	231	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	180	393	1	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																															
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	111	179	2	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690828	89690828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202004587		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	19	199	0	ENST00000371953.3:c.235G>A	p.Ala79Thr	p.A79T	ENST00000371953	NM_000314.4	79	Gcc/Acc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920402	114920402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	297	333	0	ENST00000543371.1:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000543371	NM_001198531.1	448	cGg/cAg																																																																															
HRAS	3265	MSKCC	GRCh37	11	532700	532700	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142218590		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	396	549	0	ENST00000311189.7:c.506G>A	p.Arg169Gln	p.R169Q	ENST00000311189		169	cGg/cAg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741936	17741936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	126	140	0	ENST00000250003.3:c.607C>T	p.Arg203Cys	p.R203C	ENST00000250003	NM_002478.4	203	Cgc/Tgc																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205157	61205157	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144867876		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	200	480	0	ENST00000301761.2:c.97C>T	p.Arg33Cys	p.R33C	ENST00000301761	NM_017841.2	33	Cgc/Tgc																																																																															
CCND1	595	MSKCC	GRCh37	11	69458660	69458660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	208	260	0	ENST00000227507.2:c.475G>A	p.Asp159Asn	p.D159N	ENST00000227507	NM_053056.2	159	Gat/Aat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424970	49424970	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783691		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	387	495	0	ENST00000301067.7:c.13518del	p.Ser4507AlafsTer12	p.S4507Afs*12	ENST00000301067	NM_003482.3	4506	ccC/cc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112388	115112388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	206	335	0	ENST00000257566.3:c.1352C>T	p.Ala451Val	p.A451V	ENST00000257566	NM_016569.3	451	gCg/gTg																																																																															
RB1	5925	MSKCC	GRCh37	13	48941657	48941657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	98	140	0	ENST00000267163.4:c.967G>T	p.Glu323Ter	p.E323*	ENST00000267163	NM_000321.2	323	Gaa/Taa																																																																															
MAX	4149	MSKCC	GRCh37	14	65560464	65560465	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	279	311	0	ENST00000358664.4:c.132_133del	p.His44GlnfsTer42	p.H44Qfs*42	ENST00000358664	NM_002382.4	44	caCAgt/cagt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562799	95562799	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	181	347	0	ENST00000343455.3:c.4458delA	p.Lys1486AsnfsTer4	p.K1486Nfs*4	ENST00000343455	NM_177438.2	1486	aaA/aa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569817	95569817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	107	233	0	ENST00000343455.3:c.3916G>A	p.Ala1306Thr	p.A1306T	ENST00000343455	NM_177438.2	1306	Gct/Act																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482869	67482869	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	216	292	0	ENST00000327367.4:c.1273T>C	p.Ser425Pro	p.S425P	ENST00000327367	NM_005902.3	425	Tct/Cct																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	172	332	7	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641103	3641103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	543	767	0	ENST00000294008.3:c.2536G>T	p.Val846Leu	p.V846L	ENST00000294008	NM_032444.2	846	Gtg/Ttg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	203	343	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3841994	3841994	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	179	245	2	ENST00000262367.5:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000262367	NM_004380.2	440	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	168	361	0	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	240	453	0	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831357	72831358	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTG	rs552138038		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	150	350	1	ENST00000268489.5:c.5221_5223dup	p.Gln1741dup	p.Q1741dup	ENST00000268489	NM_006885.3	1741	-/CAA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	394	454	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	214	321	8	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883642	37883642	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	373	517	0	ENST00000269571.5:c.3254T>C	p.Val1085Ala	p.V1085A	ENST00000269571		1085	gTa/gCa																																																																															
EZH1	2145	MSKCC	GRCh37	17	40865346	40865346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	320	388	1	ENST00000428826.2:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000428826		362	cGg/cAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	548	494	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437606	56437606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886926322		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	200	262	0	ENST00000407977.2:c.856C>T	p.Arg286Trp	p.R286W	ENST00000407977		286	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440643	56440643	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	338	403	0	ENST00000407977.2:c.575del	p.Pro192ArgfsTer11	p.P192Rfs*11	ENST00000407977		192	cCg/cg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	258	388	1	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	30	36	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78896542	78896542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	374	515	0	ENST00000306801.3:c.2539C>T	p.Pro847Ser	p.P847S	ENST00000306801	NM_020761.2	847	Ccg/Tcg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621908	1621910	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	329	548	1	ENST00000344749.5:c.882_884delCTC	p.Ser295del	p.S295del	ENST00000344749	NM_001136139.2	294	tcCTCa/tca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	322	594	1	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224532	36224532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759167832		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	101	646	0	ENST00000222270.7:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000222270	NM_014727.1	2332	Cgt/Tgt																																																																															
ERF	2077	MSKCC	GRCh37	19	42753728	42753728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	337	562	1	ENST00000222329.4:c.536G>A	p.Arg179His	p.R179H	ENST00000222329	NM_006494.2	179	cGc/cAc																																																																															
CIC	23152	MSKCC	GRCh37	19	42791282	42791282	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	314	464	0	ENST00000575354.2:c.346del	p.Val116TrpfsTer89	p.V116Wfs*89	ENST00000575354	NM_015125.3	114	ttG/tt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919865	50919866	+	splice_acceptor_variant	Splice_Site	INS	-	-	G	rs756872503		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	261	468	1	ENST00000440232.2:c.2959dup		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
PPP2R1A	5518	MSKCC	GRCh37	19	52714552	52714552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	221	405	0	ENST00000322088.6:c.310G>A	p.Val104Met	p.V104M	ENST00000322088	NM_014225.5	104	Gtg/Atg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967180	25967180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	210	320	0	ENST00000435504.4:c.2026G>A	p.Ala676Thr	p.A676T	ENST00000435504		676	Gct/Act																																																																															
XPO1	7514	MSKCC	GRCh37	2	61720105	61720105	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	225	271	0	ENST00000401558.2:c.1329A>T	p.Glu443Asp	p.E443D	ENST00000401558	NM_003400.3	443	gaA/gaT																																																																															
CASP8	841	MSKCC	GRCh37	2	202149734	202149734	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	298	432	0	ENST00000358485.4:c.1175T>A	p.Ile392Asn	p.I392N	ENST00000358485	NM_001080125.1	392	aTc/aAc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793362	242793362	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137861407		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	376	529	0	ENST00000334409.5:c.715G>A	p.Val239Met	p.V239M	ENST00000334409	NM_005018.2	239	Gtg/Atg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	62	209	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713414	40713414	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	261	418	0	ENST00000373198.4:c.4101del	p.Ser1368ProfsTer31	p.S1368Pfs*31	ENST00000373198	NM_133170.3	1367	ccC/cc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	187	370	0	ENST00000371085.3:c.601C>A	p.Arg201Ser	p.R201S	ENST00000371085	NM_000516.4	201	Cgt/Agt																																																																															
ERG	2078	MSKCC	GRCh37	21	39775477	39775477	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	311	397	0	ENST00000288319.7:c.543del	p.Ser182AlafsTer22	p.S182Afs*22	ENST00000288319	NM_182918.3	181	ccC/cc																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655272	45655272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	399	519	0	ENST00000407780.3:c.580C>T	p.Arg194Trp	p.R194W	ENST00000407780	NM_001283052.1	194	Cgg/Tgg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	332	230	8	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
MLH1	4292	MSKCC	GRCh37	3	37053348	37053348	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	36	309	0	ENST00000231790.2:c.588delA	p.Lys196AsnfsTer6	p.K196Nfs*6	ENST00000231790	NM_000249.3	195	Aaa/aa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47143009	47143010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	214	215	0	ENST00000409792.3:c.4953dup	p.Thr1652TyrfsTer14	p.T1652Yfs*14	ENST00000409792	NM_014159.6	1651	-/T																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165636	47165636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	280	415	0	ENST00000409792.3:c.490G>A	p.Ala164Thr	p.A164T	ENST00000409792	NM_014159.6	164	Gca/Aca																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119582302	119582302	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	191	244	1	ENST00000316626.5:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000316626		367	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134885834	134885834	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	184	286	0	ENST00000398015.3:c.1745A>G	p.Tyr582Cys	p.Y582C	ENST00000398015	NM_004441.4	582	tAc/tGc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138474610	138474610	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	38	301	0	ENST00000289153.2:c.383T>G	p.Val128Gly	p.V128G	ENST00000289153	NM_006219.2	128	gTc/gGc																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182662919	182662919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	236	350	0	ENST00000292782.4:c.743G>A	p.Arg248His	p.R248H	ENST00000292782	NM_020640.2	248	cGc/cAc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747967	41747967	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	82	87	0	ENST00000226382.2:c.802G>T	p.Gly268Cys	p.G268C	ENST00000226382	NM_003924.3	268	Ggc/Tgc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244151	153244151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	301	342	0	ENST00000281708.4:c.2006G>T	p.Gly669Val	p.G669V	ENST00000281708	NM_033632.3	669	gGg/gTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268144	153268144	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs920052554		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	239	253	0	ENST00000281708.4:c.664C>T	p.Arg222Ter	p.R222*	ENST00000281708	NM_033632.3	222	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541928	187541928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	301	370	0	ENST00000441802.2:c.5812G>A	p.Val1938Ile	p.V1938I	ENST00000441802	NM_005245.3	1938	Gtc/Atc																																																																															
SDHA	6389	MSKCC	GRCh37	5	224527	224527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	196	213	0	ENST00000264932.6:c.203G>A	p.Gly68Asp	p.G68D	ENST00000264932	NM_004168.2	68	gGc/gAc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294577	1294577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	231	238	0	ENST00000310581.5:c.424C>T	p.Arg142Cys	p.R142C	ENST00000310581	NM_198253.2	142	Cgc/Tgc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38958801	38958801	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	78	206	0	ENST00000357387.3:c.2311C>A	p.Leu771Ile	p.L771I	ENST00000357387	NM_152756.3	771	Ctt/Att																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	304	294	7	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576819	67576819	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	138	254	0	ENST00000274335.5:c.901C>T	p.Arg301Ter	p.R301*	ENST00000274335		301	Cga/Tga																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	296	302	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047927	180047927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	303	590	0	ENST00000261937.6:c.2248G>A	p.Val750Met	p.V750M	ENST00000261937	NM_182925.4	750	Gtg/Atg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048560	180048560	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	309	509	0	ENST00000261937.6:c.2002A>T	p.Lys668Ter	p.K668*	ENST00000261937	NM_182925.4	668	Aag/Tag																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402540	20402540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	209	232	0	ENST00000346618.3:c.77C>T	p.Ala26Val	p.A26V	ENST00000346618	NM_001949.4	26	gCc/gTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166743	32166743	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	364	561	2	ENST00000375023.3:c.4495C>T	p.Arg1499Ter	p.R1499*	ENST00000375023	NM_004557.3	1499	Cga/Tga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521957	157521957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	158	291	0	ENST00000346085.5:c.4229C>T	p.Ser1410Phe	p.S1410F	ENST00000346085	NM_020732.3	1410	tCc/tTc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2956939	2956939	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	258	303	1	ENST00000396946.4:c.2688del	p.Phe896LeufsTer18	p.F896Lfs*18	ENST00000396946	NM_032415.4	896	ttT/tt																																																																															
HGF	3082	MSKCC	GRCh37	7	81392132	81392132	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	140	211	0	ENST00000222390.5:c.145A>G	p.Thr49Ala	p.T49A	ENST00000222390	NM_000601.4	49	Acc/Gcc																																																																															
MET	4233	MSKCC	GRCh37	7	116422053	116422053	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	175	232	0	ENST00000397752.3:c.3537del	p.Asp1180IlefsTer9	p.D1180Ifs*9	ENST00000397752	NM_000245.2	1178	gtA/gt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	186	220	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187195	38187195	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	430	608	0	ENST00000317025.8:c.1282A>G	p.Thr428Ala	p.T428A	ENST00000317025	NM_023034.1	428	Act/Gct																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	252	356	1	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87359975	87359975	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752393508		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	109	154	0	ENST00000277120.3:c.1283G>A	p.Arg428Gln	p.R428Q	ENST00000277120		428	cGg/cAg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98232166	98232166	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	150	234	0	ENST00000331920.6:c.1776del	p.Pro593LeufsTer30	p.P593Lfs*30	ENST00000331920	NM_000264.3	592	ttT/tt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137321073	137321073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	201	361	1	ENST00000481739.1:c.1030G>A	p.Ala344Thr	p.A344T	ENST00000481739	NM_002957.4	344	Gcc/Acc																																																																															
BTK	695	MSKCC	GRCh37	X	100615679	100615679	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	364	445	4	ENST00000308731.7:c.653del	p.Lys218ArgfsTer11	p.K218Rfs*11	ENST00000308731	NM_000061.2	218	aAg/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0032067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	160	518	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913558	32913559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1265028174		P-0032067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	92	360	1	ENST00000380152.3:c.5073dup	p.Trp1692MetfsTer3	p.W1692Mfs*3	ENST00000380152		1689	gca/gcAa																																																																															
B2M	567	MSKCC	GRCh37	15	45007818	45007818	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	49	357	0	ENST00000558401.1:c.265G>T	p.Glu89Ter	p.E89*	ENST00000558401	NM_004048.2	89	Gaa/Taa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784944	9784960	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCAGGCCTGCCTGA	GCGGCAGGCCTGCCTGA	-			P-0032067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	130	585	0	ENST00000377346.4:c.2949_2965del	p.Ala984GlnfsTer31	p.A984Qfs*31	ENST00000377346	NM_005026.3	983	GCGGCAGGCCTGCCTGAg/g																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939081	36939081	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	76	610	1	ENST00000361632.4:c.628G>T	p.Gly210Trp	p.G210W	ENST00000361632		210	Ggg/Tgg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14015946	14015946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	42	229	0	ENST00000311895.7:c.266C>A	p.Thr89Lys	p.T89K	ENST00000311895	NM_005236.2	89	aCa/aAa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281355	15281355	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	51	470	0	ENST00000263388.2:c.4901T>C	p.Leu1634Pro	p.L1634P	ENST00000263388	NM_000435.2	1634	cTg/cCg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29099525	29099525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	74	251	0	ENST00000328354.6:c.876del	p.Phe292LeufsTer12	p.F292Lfs*12	ENST00000328354	NM_007194.3	292	ttT/tt																																																																															
EP300	2033	MSKCC	GRCh37	22	41513561	41513561	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	93	426	0	ENST00000263253.7:c.465C>G	p.Asn155Lys	p.N155K	ENST00000263253	NM_001429.3	155	aaC/aaG																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748122	41748133	+	inframe_deletion	In_Frame_Del	DEL	CCGCCGCCGCCT	CCGCCGCCGCCT	-			P-0032067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	77	148	0	ENST00000226382.2:c.636_647del	p.Gly214_Gly217del	p.G214_G217del	ENST00000226382	NM_003924.3	212	ggAGGCGGCGGCGGc/ggc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249407	110249407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	247	816	0	ENST00000374672.4:c.1166C>T	p.Pro389Leu	p.P389L	ENST00000374672	NM_004235.4	389	cCc/cTc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864184	57864189	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTCA	CTGTCA	T			P-0032067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	108	460	0	ENST00000228682.2:c.1661_1666delinsT	p.Thr554MetfsTer86	p.T554Mfs*86	ENST00000228682	NM_005269.2	554	aCTGTCAgc/aTgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0032070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	128	596	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0032070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	97	270	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0032070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	42	453	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18699293	18699293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	49	337	1	ENST00000266497.5:c.3394C>A	p.Gln1132Lys	p.Q1132K	ENST00000266497		1132	Caa/Aaa																																																																															
MDM2	4193	MSKCC	GRCh37	12	69218339	69218339	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	47	403	0	ENST00000462284.1:c.431T>A	p.Leu144His	p.L144H	ENST00000462284	NM_002392.5	144	cTt/cAt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026150	48026150	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	63	332	0	ENST00000234420.5:c.1028C>A	p.Pro343His	p.P343H	ENST00000234420	NM_000179.2	343	cCt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	32	377	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0032078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	32	137	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522188	157522188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	46	457	1	ENST00000346085.5:c.4460C>T	p.Ala1487Val	p.A1487V	ENST00000346085	NM_020732.3	1487	gCg/gTg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193202184	193202184	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	19	296	0	ENST00000367435.3:c.1216C>G	p.Gln406Glu	p.Q406E	ENST00000367435	NM_024529.4	406	Caa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577125	7577126	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	99	561	0	ENST00000269305.4:c.812dup	p.Val272GlyfsTer34	p.V272Gfs*34	ENST00000269305	NM_001126112.2	271	gag/gaAg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028668	12028668	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	41	360	0	ENST00000353533.5:c.871T>A	p.Trp291Arg	p.W291R	ENST00000353533	NM_003010.3	291	Tgg/Agg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618667	37618667	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	73	409	0	ENST00000447079.4:c.343C>T	p.Gln115Ter	p.Q115*	ENST00000447079	NM_015083.1	115	Cag/Tag																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2494665	2494665	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	63	543	0	ENST00000355716.4:c.805G>C	p.Val269Leu	p.V269L	ENST00000355716	NM_003820.2	269	Gtg/Ctg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115252204	115252204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	79	360	0	ENST00000369535.4:c.436G>T	p.Ala146Ser	p.A146S	ENST00000369535	NM_002524.4	146	Gcc/Tcc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115261293	115261293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	41	500	0	ENST00000438362.2:c.2428G>T	p.Asp810Tyr	p.D810Y	ENST00000438362	NM_001242891.1	810	Gat/Tat																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246518396	246518396	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	129	399	0	ENST00000388985.4:c.165del	p.Lys56ArgfsTer4	p.K56Rfs*4	ENST00000388985		55	ggG/gg																																																																															
RET	5979	MSKCC	GRCh37	10	43607639	43607639	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	83	745	0	ENST00000355710.3:c.1615G>C	p.Gly539Arg	p.G539R	ENST00000355710	NM_020975.4	539	Ggc/Cgc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104263928	104263928	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	17	176	0	ENST00000369902.3:c.19A>G	p.Ser7Gly	p.S7G	ENST00000369902	NM_016169.3	7	Agc/Ggc																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154769	2154769	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	64	589	0	ENST00000434045.2:c.452C>A	p.Ser151Ter	p.S151*	ENST00000434045	NM_001127598.1	151	tCg/tAg																																																																															
ATM	472	MSKCC	GRCh37	11	108235809	108235809	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	32	323	0	ENST00000278616.4:c.8851G>A	p.Val2951Ile	p.V2951I	ENST00000278616	NM_000051.3	2951	Gtc/Atc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18446861	18446861	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	56	202	0	ENST00000266497.5:c.946del	p.Ala316GlnfsTer19	p.A316Qfs*19	ENST00000266497		316	Gca/ca																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18491415	18491415	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	34	162	0	ENST00000266497.5:c.1328G>T	p.Cys443Phe	p.C443F	ENST00000266497		443	tGt/tTt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678503	88678503	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	28	456	0	ENST00000360948.2:c.1033T>G	p.Ser345Ala	p.S345A	ENST00000360948	NM_001012338.2	345	Tcc/Gcc																																																																															
NF1	4763	MSKCC	GRCh37	17	29592246	29592246	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	36	99	0	ENST00000358273.4:c.4725-1G>T		p.X1575_splice	ENST00000358273	NM_001042492.2	1575																																																																																
BRIP1	83990	MSKCC	GRCh37	17	59861709	59861709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	118	212	0	ENST00000259008.2:c.1550C>T	p.Pro517Leu	p.P517L	ENST00000259008	NM_032043.2	517	cCt/cTt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10283839	10283839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	49	469	0	ENST00000340748.4:c.647C>T	p.Pro216Leu	p.P216L	ENST00000340748		216	cCg/cTg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46611660	46611660	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	92	695	0	ENST00000263734.3:c.2474G>T	p.Arg825Leu	p.R825L	ENST00000263734	NM_001430.4	825	cGg/cTg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99155430	99155430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	32	369	0	ENST00000074304.5:c.656C>G	p.Thr219Ser	p.T219S	ENST00000074304	NM_001134224.1	219	aCt/aGt																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128047336	128047337	+	missense_variant	Missense_Mutation	DNP	CT	CT	TC			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	87	487	1	ENST00000285398.2:c.585_586delinsGA	p.Glu196Lys	p.E196K	ENST00000285398	NM_000122.1	195	cgAGaa/cgGAaa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523308	9523308	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	55	499	1	ENST00000353224.5:c.1929C>A	p.Tyr643Ter	p.Y643*	ENST00000353224	NM_177990.2	643	taC/taA																																																																															
EP300	2033	MSKCC	GRCh37	22	41527599	41527600	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	27	415	0	ENST00000263253.7:c.1490_1491delinsTT	p.Gly497Val	p.G497V	ENST00000263253	NM_001429.3	497	gGG/gTT																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645698	12645700	+	inframe_deletion	In_Frame_Del	DEL	CGA	CGA	-			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	33	304	0	ENST00000251849.4:c.769_771del	p.Ser257del	p.S257del	ENST00000251849	NM_002880.3	257	TCG/-																																																																															
ATR	545	MSKCC	GRCh37	3	142281380	142281380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	66	485	0	ENST00000350721.4:c.864G>T	p.Leu288Phe	p.L288F	ENST00000350721	NM_001184.3	288	ttG/ttT																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430971	181430971	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	72	556	0	ENST00000325404.1:c.823A>C	p.Ser275Arg	p.S275R	ENST00000325404	NM_003106.3	275	Agc/Cgc																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99823030	99823030	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	25	365	0	ENST00000280892.6:c.182A>T	p.Asn61Ile	p.N61I	ENST00000280892	NM_001130678.1	61	aAc/aTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034492	47034492	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	74	276	0	ENST00000329236.7:c.345+1G>T		p.X115_splice	ENST00000329236	NM_001204466.1	115																																																																																
STAG2	10735	MSKCC	GRCh37	X	123195080	123195080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	62	195	0	ENST00000218089.9:c.1423G>A	p.Glu475Lys	p.E475K	ENST00000218089	NM_001042749.1	475	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0032127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	100	626	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0032127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	131	624	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138400860	138400860	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	113	558	0	ENST00000289153.2:c.2453A>T	p.Gln818Leu	p.Q818L	ENST00000289153	NM_006219.2	818	cAa/cTa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152415654	152415654	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	111	581	1	ENST00000206249.3:c.1504C>T	p.Gln502Ter	p.Q502*	ENST00000206249	NM_000125.3	502	Cag/Tag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18691238	18691238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	48	365	0	ENST00000266497.5:c.3349C>A	p.Leu1117Met	p.L1117M	ENST00000266497		1117	Ctg/Atg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59820495	59820495	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0032127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	85	372	0	ENST00000259008.2:c.2258A>T	p.Asp753Val	p.D753V	ENST00000259008	NM_032043.2	753	gAt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207114	1207129	+	frameshift_variant	Frame_Shift_Del	DEL	GACTCGGAGACGCTGT	GACTCGGAGACGCTGT	-			P-0032127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	113	773	0	ENST00000326873.7:c.203_218del	p.Asp68AlafsTer23	p.D68Afs*23	ENST00000326873	NM_000455.4	68	GACTCGGAGACGCTGTgc/gc																																																																															
RAC2	5880	MSKCC	GRCh37	22	37628031	37628031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	117	645	0	ENST00000249071.6:c.229G>A	p.Val77Ile	p.V77I	ENST00000249071	NM_002872.4	77	Gtc/Atc																																																																															
FYN	2534	MSKCC	GRCh37	6	112015731	112015731	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	90	562	0	ENST00000368678.4:c.1111G>A	p.Val371Met	p.V371M	ENST00000368678		371	Gtg/Atg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372343	55372343	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	196	577	0	ENST00000297316.4:c.1034del	p.Gly345AlafsTer42	p.G345Afs*42	ENST00000297316	NM_022454.3	345	Ggc/gc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376682	8376682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	49	553	1	ENST00000356435.5:c.4431C>A	p.His1477Gln	p.H1477Q	ENST00000356435		1477	caC/caA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412722	63412722	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	54	663	0	ENST00000330258.3:c.445G>T	p.Gly149Ter	p.G149*	ENST00000330258	NM_152424.3	149	Gga/Tga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602829	10602831	+	stop_gained	Nonsense_Mutation	ONP	ATG	ATG	TTT			P-0032127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	184	819	0	ENST00000171111.5:c.747_749delinsAAA	p.Cys249_Ile250delinsTer	p.C249_I250delins*	ENST00000171111	NM_203500.1	249	tgCATc/tgAAAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0032129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	56	893	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0032129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	149	535	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	167	744	1	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0032129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	152	361	1	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	72	484	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600446	10600446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	22	888	2	ENST00000171111.5:c.1409G>A	p.Arg470His	p.R470H	ENST00000171111	NM_203500.1	470	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092756	27092757	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	199	667	0	ENST00000324856.7:c.2777_2778insA	p.Gly927TrpfsTer9	p.G927Wfs*9	ENST00000324856	NM_006015.4	926	act/acAt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88659558	88659558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	47	642	0	ENST00000372037.3:c.341C>T	p.Pro114Leu	p.P114L	ENST00000372037	NM_004329.2	114	cCa/cTa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56477631	56477631	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	209	859	0	ENST00000267101.3:c.179T>G	p.Met60Arg	p.M60R	ENST00000267101	NM_001982.3	60	aTg/aGg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30315474	30315474	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	174	638	0	ENST00000322652.5:c.1159C>T	p.Gln387Ter	p.Q387*	ENST00000322652	NM_015355.2	387	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119043	70119044	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0032129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	181	657	0	ENST00000245479.2:c.618_619dup	p.Leu207ArgfsTer13	p.L207Rfs*13	ENST00000245479	NM_000346.3	205	-/GC																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11129634	11129634	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0032129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	228	811	0	ENST00000344626.4:c.2440A>G	p.Thr814Ala	p.T814A	ENST00000344626	NM_003072.3	814	Acg/Gcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	226	504	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0032137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	296	568	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	321	324	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538323	9538323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	72	549	0	ENST00000353224.5:c.1675C>T	p.Leu559Phe	p.L559F	ENST00000353224	NM_177990.2	559	Ctt/Ttt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0032151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	92	437	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509433	106509433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	72	454	0	ENST00000359195.3:c.1427G>A	p.Arg476His	p.R476H	ENST00000359195	NM_002649.2	476	cGc/cAc																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111921774	111921774	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150291943		P-0032153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	81	390	0	ENST00000393256.3:c.563G>A	p.Arg188His	p.R188H	ENST00000393256	NM_006538.4	188	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0032153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	217	582	1	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
BIRC3	330	MSKCC	GRCh37	11	102195365	102195365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	179	442	0	ENST00000263464.3:c.125G>T	p.Gly42Val	p.G42V	ENST00000263464	NM_001165.4	42	gGg/gTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89880984	89880984	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	158	467	0	ENST00000389301.3:c.227A>G	p.Lys76Arg	p.K76R	ENST00000389301	NM_000135.2	76	aAa/aGa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0032170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	13	511	0	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																															
STK40	83931	MSKCC	GRCh37	1	36824350	36824350	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	89	521	0	ENST00000373129.3:c.186del	p.Tyr63IlefsTer3	p.Y63Ifs*3	ENST00000373129	NM_032017.1	62	ttC/tt																																																																															
ATRX	546	MSKCC	GRCh37	X	76855210	76855211	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	35	261	0	ENST00000373344.5:c.5776dup	p.Asp1926GlyfsTer16	p.D1926Gfs*16	ENST00000373344	NM_000489.3	1926	gat/gGat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587782082		P-0032174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	189	596	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0032175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	93	574	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	178	672	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112111358	112111358	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	13	206	0	ENST00000257430.4:c.458del	p.Lys153ArgfsTer17	p.K153Rfs*17	ENST00000257430	NM_000038.5	152	gAa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	188	481	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	22	229	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	52	246	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	177	661	1	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27102083	27102083	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	119	546	0	ENST00000324856.7:c.5009G>T	p.Trp1670Leu	p.W1670L	ENST00000324856	NM_006015.4	1670	tGg/tTg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243858994	243858995	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	38	408	0	ENST00000263826.5:c.70_71delinsAG	p.Pro24Arg	p.P24R	ENST00000263826	NM_005465.4	24	CCa/AGa																																																																															
POLE	5426	MSKCC	GRCh37	12	133226463	133226463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	32	406	0	ENST00000320574.5:c.3595G>A	p.Glu1199Lys	p.E1199K	ENST00000320574	NM_006231.2	1199	Gag/Aag																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40684218	40684218	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	99	438	0	ENST00000249776.8:c.816G>T	p.Glu272Asp	p.E272D	ENST00000249776	NM_033286.3	272	gaG/gaT																																																																															
MGA	23269	MSKCC	GRCh37	15	41999981	41999982	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	123	716	2	ENST00000219905.7:c.2244_2245delinsTT	p.Leu748_Gly749delinsPheTer	p.L748_G749delinsF*	ENST00000219905	NM_001164273.1	748	ttGGga/ttTTga																																																																															
FANCA	2175	MSKCC	GRCh37	16	89865620	89865620	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	123	506	0	ENST00000389301.3:c.847G>T	p.Ala283Ser	p.A283S	ENST00000389301	NM_000135.2	283	Gct/Tct																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58678059	58678059	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	66	197	0	ENST00000305921.3:c.284G>C	p.Arg95Pro	p.R95P	ENST00000305921	NM_003620.3	95	cGt/cCt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211848	36211848	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	304	911	0	ENST00000222270.7:c.1599T>G	p.Ser533Arg	p.S533R	ENST00000222270	NM_014727.1	533	agT/agG																																																																															
ATR	545	MSKCC	GRCh37	3	142242879	142242879	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	41	495	0	ENST00000350721.4:c.4108G>C	p.Asp1370His	p.D1370H	ENST00000350721	NM_001184.3	1370	Gat/Cat																																																																															
TP63	8626	MSKCC	GRCh37	3	189608667	189608667	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	63	470	0	ENST00000264731.3:c.1742T>C	p.Met581Thr	p.M581T	ENST00000264731	NM_003722.4	581	aTg/aCg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524595	187524595	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	287	673	1	ENST00000441802.2:c.11085A>T	p.Leu3695Phe	p.L3695F	ENST00000441802	NM_005245.3	3695	ttA/ttT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538353	187538353	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	124	340	0	ENST00000441802.2:c.8881G>T	p.Gly2961Trp	p.G2961W	ENST00000441802	NM_005245.3	2961	Ggg/Tgg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370829	55370829	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	76	242	0	ENST00000297316.4:c.131T>A	p.Val44Glu	p.V44E	ENST00000297316	NM_022454.3	44	gTg/gAg																																																																															
AR	367	MSKCC	GRCh37	X	66765919	66765919	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	91	820	0	ENST00000374690.3:c.931C>G	p.Pro311Ala	p.P311A	ENST00000374690	NM_000044.3	311	Cct/Gct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	248	542	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31386450	31386450	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	76	425	0	ENST00000328111.2:c.1674+1G>C		p.X558_splice	ENST00000328111	NM_006892.3	558																																																																																
GATA3	2625	MSKCC	GRCh37	10	8100403	8100403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	88	544	0	ENST00000346208.3:c.377C>A	p.Ser126Tyr	p.S126Y	ENST00000346208		126	tCc/tAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670880	134670880	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	59	292	1	ENST00000398015.3:c.791G>T	p.Ser264Ile	p.S264I	ENST00000398015	NM_004441.4	264	aGc/aTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507321	8507321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	117	329	0	ENST00000356435.5:c.1657G>A	p.Asp553Asn	p.D553N	ENST00000356435		553	Gat/Aat																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187817	11187817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	87	414	1	ENST00000361445.4:c.6080G>T	p.Trp2027Leu	p.W2027L	ENST00000361445	NM_004958.3	2027	tGg/tTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11316145	11316145	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	93	436	0	ENST00000361445.4:c.609G>C	p.Gln203His	p.Q203H	ENST00000361445	NM_004958.3	203	caG/caC																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175996765	175996765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	74	399	1	ENST00000367669.3:c.1672G>T	p.Val558Leu	p.V558L	ENST00000367669	NM_022457.5	558	Gtg/Ttg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94192687	94192710	+	inframe_deletion	In_Frame_Del	DEL	CCACAAATTCTTGTACTGCTTCAC	CCACAAATTCTTGTACTGCTTCAC	-			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	187	470	0	ENST00000323929.3:c.1364_1387del	p.Gly455_Val462del	p.G455_V462del	ENST00000323929	NM_005591.3	455	gGTGAAGCAGTACAAGAATTTGTGGac/gac																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94204761	94204761	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	80	377	0	ENST00000323929.3:c.824C>A	p.Ser275Tyr	p.S275Y	ENST00000323929	NM_005591.3	275	tCc/tAc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125497576	125497576	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	126	265	0	ENST00000428830.2:c.140A>G	p.Asp47Gly	p.D47G	ENST00000428830	NM_001114121.2	47	gAc/gGc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337660	73337660	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	45	266	0	ENST00000377767.4:c.2056G>C	p.Ala686Pro	p.A686P	ENST00000377767	NM_014953.3	686	Gct/Cct																																																																															
MAX	4149	MSKCC	GRCh37	14	65544683	65544684	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	210	553	0	ENST00000358664.4:c.242_243del	p.His81ProfsTer5	p.H81Pfs*5	ENST00000358664	NM_002382.4	81	cAC/c																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43772156	43772156	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	118	529	0	ENST00000382044.4:c.559G>C	p.Glu187Gln	p.E187Q	ENST00000382044	NM_001141980.1	187	Gag/Cag																																																																															
PALB2	79728	MSKCC	GRCh37	16	23614983	23614983	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	148	285	0	ENST00000261584.4:c.3358G>T	p.Glu1120Ter	p.E1120*	ENST00000261584	NM_024675.3	1120	Gaa/Taa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56867141	56867141	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	233	453	0	ENST00000308159.5:c.1360A>T	p.Thr454Ser	p.T454S	ENST00000308159	NM_014669.4	454	Acg/Tcg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435602	56435602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	113	534	0	ENST00000407977.2:c.1535G>T	p.Ser512Ile	p.S512I	ENST00000407977		512	aGc/aTc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226361	2226361	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	254	588	1	ENST00000398665.3:c.3841G>T	p.Glu1281Ter	p.E1281*	ENST00000398665	NM_032482.2	1281	Gag/Tag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18964065	18964065	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	186	367	0	ENST00000262803.5:c.1062G>T	p.Met354Ile	p.M354I	ENST00000262803	NM_002911.3	354	atG/atT																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794361	242794361	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200312345		P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	107	511	0	ENST00000334409.5:c.581G>A	p.Arg194Gln	p.R194Q	ENST00000334409	NM_005018.2	194	cGg/cAg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52649469	52649469	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	81	384	0	ENST00000394830.3:c.1822T>G	p.Tyr608Asp	p.Y608D	ENST00000394830	NM_018313.4	608	Tat/Gat																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137522018	137522018	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	74	174	0	ENST00000367739.4:c.861G>C	p.Leu287Phe	p.L287F	ENST00000367739	NM_000416.2	287	ttG/ttC																																																																															
PREX2	80243	MSKCC	GRCh37	8	69103970	69103970	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	103	473	0	ENST00000288368.4:c.4360G>T	p.Asp1454Tyr	p.D1454Y	ENST00000288368	NM_024870.2	1454	Gac/Tac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974719	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	CGC	CGC	GG			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	126	284	0	ENST00000304494.5:c.106_108delinsCC	p.Ala36ProfsTer17	p.A36Pfs*17	ENST00000304494	NM_000077.4	36	GCG/CC																																																																															
ABL1	25	MSKCC	GRCh37	9	133748425	133748425	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	143	284	0	ENST00000318560.5:c.1085+1G>T		p.X362_splice	ENST00000318560	NM_005157.4	362																																																																																
BTK	695	MSKCC	GRCh37	X	100617573	100617574	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0032183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	96	282	0	ENST00000308731.7:c.495_496delinsAA	p.Cys165_Gln166delinsTer	p.C165_Q166delins*	ENST00000308731	NM_000061.2	165	tgCCaa/tgAAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	168	537	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
MST1	4485	MSKCC	GRCh37	3	49725264	49725264	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142358513		P-0032194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	78	137	3	ENST00000449682.2:c.161C>T	p.Ala54Val	p.A54V	ENST00000449682	NM_020998.3	54	gCg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151902229	151902229	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0032194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	203	377	5	ENST00000262189.6:c.3923C>G	p.Ser1308Ter	p.S1308*	ENST00000262189	NM_170606.2	1308	tCa/tGa																																																																															
PGR	5241	MSKCC	GRCh37	11	100998745	100998745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	281	493	3	ENST00000325455.5:c.1057G>T	p.Val353Phe	p.V353F	ENST00000325455	NM_001202474.3	353	Gtc/Ttc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670279	134670279	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	95	340	0	ENST00000398015.3:c.190T>A	p.Phe64Ile	p.F64I	ENST00000398015	NM_004441.4	64	Ttc/Atc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417861	138417861	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	248	428	3	ENST00000289153.2:c.1658A>T	p.Asn553Ile	p.N553I	ENST00000289153	NM_006219.2	553	aAt/aTt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	87	534	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																															
AR	367	MSKCC	GRCh37	X	66943553	66943553	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	39	220	0	ENST00000374690.3:c.2633C>G	p.Thr878Ser	p.T878S	ENST00000374690	NM_000044.3	878	aCt/aGt																																																																															
SYK	6850	MSKCC	GRCh37	9	93606505	93606505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	104	710	0	ENST00000375746.1:c.325C>T	p.Arg109Trp	p.R109W	ENST00000375746	NM_001174167.1	109	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0032218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	47	497	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0032218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	53	701	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	124	502	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178550	56178550	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	53	216	0	ENST00000399503.3:c.3523C>G	p.Gln1175Glu	p.Q1175E	ENST00000399503	NM_005921.1	1175	Caa/Gaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900040	151900040	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	88	515	0	ENST00000262189.6:c.4071A>C	p.Glu1357Asp	p.E1357D	ENST00000262189	NM_170606.2	1357	gaA/gaC																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649861	88649861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	24	278	2	ENST00000372037.3:c.110C>T	p.Ser37Leu	p.S37L	ENST00000372037	NM_004329.2	37	tCa/tTa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177950	56177950	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	95	459	0	ENST00000399503.3:c.2923C>G	p.His975Asp	p.H975D	ENST00000399503	NM_005921.1	975	Cat/Gat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0032226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	125	334	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115940	8115940	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	126	353	0	ENST00000346208.3:c.1287del	p.Phe430LeufsTer45	p.F430Lfs*45	ENST00000346208		429	tCc/tc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859492	151859492	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	287	544	0	ENST00000262189.6:c.11170G>T	p.Glu3724Ter	p.E3724*	ENST00000262189	NM_170606.2	3724	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	66	431	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562246	21562246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	140	754	3	ENST00000382592.4:c.1673G>A	p.Arg558His	p.R558H	ENST00000382592	NM_014572.2	558	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0032229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	80	471	1	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492875	56492875	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	106	341	1	ENST00000407977.2:c.64C>T	p.Gln22Ter	p.Q22*	ENST00000407977		22	Cag/Tag																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0032229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	29	254	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0032231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	882	394	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0032231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	147	501	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28891641	28891642	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0032231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	30	445	1	ENST00000282397.4:c.3379_3380delinsAA	p.Pro1127Asn	p.P1127N	ENST00000282397	NM_002019.4	1127	CCt/AAt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514757	103514757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	42	246	1	ENST00000355739.4:c.1258C>T	p.Arg420Cys	p.R420C	ENST00000355739	NM_000123.3	420	Cgt/Tgt																																																																															
CBFB	865	MSKCC	GRCh37	16	67116203	67116203	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	53	346	1	ENST00000412916.2:c.487G>T	p.Glu163Ter	p.E163*	ENST00000412916		163	Gaa/Taa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0032238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	269	574	3	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0032238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	239	426	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	284	654	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																															
FLCN	201163	MSKCC	GRCh37	17	17122346	17122346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs190786280		P-0032238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	181	426	0	ENST00000285071.4:c.1049G>A	p.Arg350Gln	p.R350Q	ENST00000285071	NM_144997.5	350	cGg/cAg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17117118	17117118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	90	582	0	ENST00000285071.4:c.1591G>A	p.Asp531Asn	p.D531N	ENST00000285071	NM_144997.5	531	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0032278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	233	603	1	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118377337	118377337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	40	255	0	ENST00000534358.1:c.10730C>T	p.Thr3577Met	p.T3577M	ENST00000534358	NM_005933.3	3577	aCg/aTg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266246	198266246	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	24	353	0	ENST00000335508.6:c.2374G>T	p.Val792Leu	p.V792L	ENST00000335508	NM_012433.2	792	Gta/Tta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	312	771	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0032311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	170	273	1	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0032311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	192	564	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969968	161969968	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746215864		P-0032311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	269	577	2	ENST00000366898.1:c.1001G>A	p.Arg334His	p.R334H	ENST00000366898	NM_004562.2	334	cGc/cAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251635	212251635	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	172	554	0	ENST00000342788.4:c.3424C>T	p.Arg1142Ter	p.R1142*	ENST00000342788	NM_005235.2	1142	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134881022	134881022	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	178	527	2	ENST00000398015.3:c.1585G>A	p.Asp529Asn	p.D529N	ENST00000398015	NM_004441.4	529	Gat/Aat																																																																															
CALR	811	MSKCC	GRCh37	19	13050017	13050017	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	201	512	0	ENST00000316448.5:c.161G>T	p.Gly54Val	p.G54V	ENST00000316448	NM_004343.3	54	gGc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0032312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	13	567	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0032312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	8	540	3	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0032312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	25	787	2	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711978	89711980	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0032334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	132	390	0	ENST00000371953.3:c.597_599del	p.Met199_Phe200delinsIle	p.M199_F200delinsI	ENST00000371953	NM_000314.4	199	aTGTtt/att																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	140	420	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807301	3807301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	93	332	0	ENST00000262367.5:c.3686G>A	p.Ser1229Asn	p.S1229N	ENST00000262367	NM_004380.2	1229	aGc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	179	620	2	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30325846	30325846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	48	315	0	ENST00000322652.5:c.2044C>T	p.Arg682Cys	p.R682C	ENST00000322652	NM_015355.2	682	Cgt/Tgt																																																																															
CD79B	974	MSKCC	GRCh37	17	62006635	62006635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	73	668	0	ENST00000392795.3:c.644G>A	p.Arg215Gln	p.R215Q	ENST00000392795	NM_001039933.1	215	cGg/cAg																																																																															
SRC	6714	MSKCC	GRCh37	20	36031599	36031599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	70	531	0	ENST00000358208.4:c.1428C>A	p.Asp476Glu	p.D476E	ENST00000358208		476	gaC/gaA																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	27	211	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175520	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAGTGAACCATG	CAGAGTGAACCATG	-			P-0032334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	59	329	0	ENST00000257430.4:c.4219_4232del	p.Ser1407TrpfsTer11	p.S1407Wfs*11	ENST00000257430	NM_000038.5	1406	CAGAGTGAACCATGc/c																																																																															
PREX2	80243	MSKCC	GRCh37	8	68930124	68930132	+	frameshift_variant	Frame_Shift_Del	DEL	ACAAAAATG	ACAAAAATG	CCAAAATA			P-0032334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	46	323	0	ENST00000288368.4:c.185_193delinsCCAAAATA	p.Asp62AlafsTer4	p.D62Afs*4	ENST00000288368	NM_024870.2	62	gACAAAAATGtg/gCCAAAATAtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0032388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	36	332	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	13	212	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	27	579	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3652140	3652140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	111	593	0	ENST00000294008.3:c.929G>A	p.Arg310Gln	p.R310Q	ENST00000294008	NM_032444.2	310	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	142	395	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	323	625	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	27	198	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0032395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	110	308	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371633	55371633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	322	581	1	ENST00000297316.4:c.323C>T	p.Ala108Val	p.A108V	ENST00000297316	NM_022454.3	108	gCg/gTg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40458460	40458460	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	585	813	0	ENST00000345506.4:c.1675A>G	p.Asn559Asp	p.N559D	ENST00000345506	NM_003152.3	559	Aac/Gac																																																																															
AXL	558	MSKCC	GRCh37	19	41745096	41745096	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	149	581	0	ENST00000301178.4:c.1162G>T	p.Glu388Ter	p.E388*	ENST00000301178	NM_021913.4	388	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112102954	112102954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	74	346	0	ENST00000257430.4:c.289G>A	p.Gly97Arg	p.G97R	ENST00000257430	NM_000038.5	97	Gga/Aga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878743	151878743	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	62	352	0	ENST00000262189.6:c.6202T>C	p.Ser2068Pro	p.S2068P	ENST00000262189	NM_170606.2	2068	Tct/Cct																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0032402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	139	544	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188177	11188177	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	90	377	0	ENST00000361445.4:c.5917A>T	p.Ile1973Phe	p.I1973F	ENST00000361445	NM_004958.3	1973	Atc/Ttc																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0032402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	37	169	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21555685	21555685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	131	585	0	ENST00000382592.4:c.2585G>A	p.Arg862Gln	p.R862Q	ENST00000382592	NM_014572.2	862	cGg/cAg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230625	46230625	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	101	495	0	ENST00000334344.6:c.874A>G	p.Ile292Val	p.I292V	ENST00000334344	NM_152641.2	292	Att/Gtt																																																																															
APC	324	MSKCC	GRCh37	5	112174781	112174785	+	frameshift_variant	Frame_Shift_Del	DEL	ATAAA	ATAAA	-			P-0032402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	37	215	0	ENST00000257430.4:c.3493_3497del	p.Lys1165Ter	p.K1165*	ENST00000257430	NM_000038.5	1164	ATAAAa/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0032403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	158	558	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0032403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	102	381	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	125	400	0	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	89	391	0	ENST00000263967.3:c.316G>C	p.Gly106Arg	p.G106R	ENST00000263967	NM_006218.2	106	Ggc/Cgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604785	48604785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	75	297	0	ENST00000342988.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000342988	NM_005359.5	536	cTa/cCa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57470682	57470683	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTT			P-0032403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	86	275	0	ENST00000371085.3:c.156_157insTTTT	p.Lys53PhefsTer2	p.K53Ffs*2	ENST00000371085	NM_000516.4	52	ggt/ggTTTTt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	235	526	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057874	27057874	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	229	663	0	ENST00000324856.7:c.1582C>T	p.Gln528Ter	p.Q528*	ENST00000324856	NM_006015.4	528	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057835	27057835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	166	782	0	ENST00000324856.7:c.1543C>T	p.Gln515Ter	p.Q515*	ENST00000324856	NM_006015.4	515	Cag/Tag																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	335	677	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162807	47162807	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	48	358	0	ENST00000409792.3:c.3319G>T	p.Glu1107Ter	p.E1107*	ENST00000409792	NM_014159.6	1107	Gag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748583	40748583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	31	310	0	ENST00000373198.4:c.2933C>T	p.Ala978Val	p.A978V	ENST00000373198	NM_133170.3	978	gCg/gTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29527459	29527459	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	45	329	0	ENST00000358273.4:c.908T>C	p.Leu303Pro	p.L303P	ENST00000358273	NM_001042492.2	303	cTa/cCa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189938	66189938	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0032406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	30	251	0	ENST00000273854.3:c.3009-1G>A		p.X1003_splice	ENST00000273854	NM_004439.5	1003																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971163	21971808	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTGTGAGGCACGGGCAAAATAGCAAAGGGGCAGGGACAGACTGACTTTTACTCCAGGCTAACTTCCTGTATTTCCCCTGAGATACAACTACTGAAATTTCTTCCTGAAATTATGTTAGGCCTGGAGATTTTTTTTTTTTTTTTTGTTCACTGCTGTATATCCAAGCGCAGAATGTGGTAATTGTTAAAAAGAGAAAACTTGTTTGTTTGTTAAAACAAATTCTCACAAAACTTTTAAGTTACACTTAGCTTCTGGGAATGTTGAACTTCAATTTCTTTTTCATTATATTAGTTTTAAAATTATATATTGGGATAGTACAGTTGTATATATTTATGTGGTACAATATGAAGTTATGATCTTT	GAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTGTGAGGCACGGGCAAAATAGCAAAGGGGCAGGGACAGACTGACTTTTACTCCAGGCTAACTTCCTGTATTTCCCCTGAGATACAACTACTGAAATTTCTTCCTGAAATTATGTTAGGCCTGGAGATTTTTTTTTTTTTTTTTGTTCACTGCTGTATATCCAAGCGCAGAATGTGGTAATTGTTAAAAAGAGAAAACTTGTTTGTTTGTTAAAACAAATTCTCACAAAACTTTTAAGTTACACTTAGCTTCTGGGAATGTTGAACTTCAATTTCTTTTTCATTATATTAGTTTTAAAATTATATATTGGGATAGTACAGTTGTATATATTTATGTGGTACAATATGAAGTTATGATCTTT	-			P-0032406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	20	283	0	ENST00000304494.5:c.151-601_195del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
SETD2	29072	MSKCC	GRCh37	3	47164505	47164505	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	44	372	0	ENST00000409792.3:c.1621C>T	p.Arg541Ter	p.R541*	ENST00000409792	NM_014159.6	541	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0032411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	468	408	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120506257	120506257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	153	313	0	ENST00000256646.2:c.1855G>A	p.Asp619Asn	p.D619N	ENST00000256646	NM_024408.3	619	Gat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0032427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	342	310	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579344	7579351	+	frameshift_variant	Frame_Shift_Del	DEL	GCAAGAAG	GCAAGAAG	-			P-0032427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	312	494	0	ENST00000269305.4:c.336_343del	p.Leu114TrpfsTer32	p.L114Wfs*32	ENST00000269305	NM_001126112.2	112	ggCTTCTTGCat/ggat																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656789	45656789	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	232	438	0	ENST00000407780.3:c.367C>A	p.Gln123Lys	p.Q123K	ENST00000407780	NM_001283052.1	123	Cag/Aag																																																																															
GATA1	2623	MSKCC	GRCh37	X	48651663	48651803	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCGTGTGCAATGCCTGCGGCCTCTACTACAAGCTACACCAGGTGACGCCCTGCCCCTTGGAGCCACCCCTCTGCTTTCCCTGTCTTCATGCCACACTGCCCCCCACTCTGTTCCTGTTCTACCTCTCTCTTCCCCCACAA	CCCGTGTGCAATGCCTGCGGCCTCTACTACAAGCTACACCAGGTGACGCCCTGCCCCTTGGAGCCACCCCTCTGCTTTCCCTGTCTTCATGCCACACTGCCCCCCACTCTGTTCCTGTTCTACCTCTCTCTTCCCCCACAA	-			P-0032427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	94	502	0	ENST00000376670.3:c.832_870+102del		p.X278_splice	ENST00000376670	NM_002049.3	278																																																																																
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0032438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	175	644	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589168	67589168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	65	305	0	ENST00000274335.5:c.1156C>T	p.Arg386Ter	p.R386*	ENST00000274335		386	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173299	112173299	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0032438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	96	222	0	ENST00000257430.4:c.2008A>T	p.Lys670Ter	p.K670*	ENST00000257430	NM_000038.5	670	Aaa/Taa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176015350	176015350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	45	377	0	ENST00000367669.3:c.1388C>T	p.Pro463Leu	p.P463L	ENST00000367669	NM_022457.5	463	cCt/cTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1226567	1226567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	155	506	0	ENST00000326873.7:c.1223G>A	p.Gly408Asp	p.G408D	ENST00000326873	NM_000455.4	408	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0032439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	38	409	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	170	591	0	ENST00000269305.4:c.613dup	p.Tyr205LeufsTer4	p.Y205Lfs*4	ENST00000269305	NM_001126112.2	205	tat/tTat																																																																															
APC	324	MSKCC	GRCh37	5	112175735	112175751	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCCAGATGCTGATAC	CTTCCAGATGCTGATAC	-			P-0032439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	45	339	0	ENST00000257430.4:c.4444_4460del	p.Leu1482PhefsTer26	p.L1482Ffs*26	ENST00000257430	NM_000038.5	1482	CTTCCAGATGCTGATACt/t																																																																															
NBN	4683	MSKCC	GRCh37	8	90971001	90971001	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	117	433	1	ENST00000265433.3:c.1076A>T	p.Asn359Ile	p.N359I	ENST00000265433	NM_002485.4	359	aAc/aTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	131	544	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0032440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	440	650	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	114	229	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591931	48591931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	141	500	0	ENST00000342988.3:c.1094G>A	p.Gly365Asp	p.G365D	ENST00000342988	NM_005359.5	365	gGt/gAt																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134823	41134823	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	525	475	0	ENST00000379561.5:c.805C>T	p.Arg269Ter	p.R269*	ENST00000379561	NM_002015.3	269	Cga/Tga																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182213	99182213	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs984538193		P-0032440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	196	571	0	ENST00000074304.5:c.2278G>A	p.Val760Ile	p.V760I	ENST00000074304	NM_001134224.1	760	Gtc/Atc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391103	89391103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	167	621	3	ENST00000336596.2:c.1169C>A	p.Thr390Asn	p.T390N	ENST00000336596	NM_005233.5	390	aCc/aAc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859707	57859707	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0032440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	95	321	0	ENST00000228682.2:c.761A>G	p.His254Arg	p.H254R	ENST00000228682	NM_005269.2	254	cAc/cGc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1325332	1325332	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	149	445	0	ENST00000381566.1:c.343T>G	p.Tyr115Asp	p.Y115D	ENST00000381566		115	Tat/Gat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577587	7577587	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	382	539	0	ENST00000269305.4:c.694A>T	p.Ile232Phe	p.I232F	ENST00000269305	NM_001126112.2	232	Atc/Ttc																																																																															
INHA	3623	MSKCC	GRCh37	2	220439769	220439769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	114	640	0	ENST00000243786.2:c.622C>T	p.Arg208Trp	p.R208W	ENST00000243786	NM_002191.3	208	Cgg/Tgg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746055	162746056	+	missense_variant	Missense_Mutation	DNP	AG	AG	TT			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	113	374	0	ENST00000367921.3:c.2178_2179delinsTT	p.Ala727Ser	p.A727S	ENST00000367921	NM_006182.2	726	atAGct/atTTct																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012328	176012328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	149	383	0	ENST00000367669.3:c.1606G>A	p.Ala536Thr	p.A536T	ENST00000367669	NM_022457.5	536	Gca/Aca																																																																															
FLT1	2321	MSKCC	GRCh37	13	29005335	29005335	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	96	651	0	ENST00000282397.4:c.926A>G	p.Tyr309Cys	p.Y309C	ENST00000282397	NM_002019.4	309	tAt/tGt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602263	10602276	+	frameshift_variant	Frame_Shift_Del	DEL	TGTTGTGGTGGATG	TGTTGTGGTGGATG	-			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	302	542	0	ENST00000171111.5:c.1302_1315del	p.Cys434TrpfsTer6	p.C434Wfs*6	ENST00000171111	NM_203500.1	434	tgCATCCACCACAACAgt/tggt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198264976	198264976	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	67	343	0	ENST00000335508.6:c.2901G>T	p.Glu967Asp	p.E967D	ENST00000335508	NM_012433.2	967	gaG/gaT																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116272	209116272	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	58	260	0	ENST00000345146.2:c.4T>G	p.Ser2Ala	p.S2A	ENST00000345146	NM_005896.2	2	Tcc/Gcc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022479	31022479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	43	227	0	ENST00000375687.4:c.1964C>A	p.Thr655Asn	p.T655N	ENST00000375687	NM_015338.5	655	aCc/aAc																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656908	45656908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	86	581	0	ENST00000407780.3:c.248G>A	p.Arg83Gln	p.R83Q	ENST00000407780	NM_001283052.1	83	cGa/cAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147546	47147546	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	138	422	0	ENST00000409792.3:c.4780A>T	p.Lys1594Ter	p.K1594*	ENST00000409792	NM_014159.6	1594	Aag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89156968	89156968	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	91	443	0	ENST00000336596.2:c.71del	p.Pro24ArgfsTer59	p.P24Rfs*59	ENST00000336596	NM_005233.5	24	Ccg/cg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664690	138664690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	179	79	0	ENST00000330315.3:c.875C>T	p.Pro292Leu	p.P292L	ENST00000330315	NM_023067.3	292	cCg/cTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55955575	55955575	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	225	550	0	ENST00000263923.4:c.3370A>G	p.Arg1124Gly	p.R1124G	ENST00000263923	NM_002253.2	1124	Aga/Gga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564675	86564675	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	108	655	0	ENST00000274376.6:c.407C>G	p.Pro136Arg	p.P136R	ENST00000274376	NM_002890.2	136	cCt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0032463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	410	715	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
SMO	6608	MSKCC	GRCh37	7	128845086	128845086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1600	141	658	0	ENST00000249373.3:c.580G>A	p.Glu194Lys	p.E194K	ENST00000249373	NM_005631.4	194	Gaa/Aaa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191448	185191448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	114	639	1	ENST00000265026.3:c.2329G>A	p.Glu777Lys	p.E777K	ENST00000265026	NM_004721.4	777	Gaa/Aaa																																																																															
RB1	5925	MSKCC	GRCh37	13	48881511	48881511	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	144	364	0	ENST00000267163.4:c.233G>A	p.Trp78Ter	p.W78*	ENST00000267163	NM_000321.2	78	tGg/tAg																																																																															
MCL1	4170	MSKCC	GRCh37	1	150549885	150549885	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	73	341	0	ENST00000369026.2:c.1019G>C	p.Gly340Ala	p.G340A	ENST00000369026	NM_021960.4	340	gGa/gCa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948248	71948248	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1195	130	814	0	ENST00000298229.2:c.2960A>G	p.Tyr987Cys	p.Y987C	ENST00000298229	NM_001567.3	987	tAc/tGc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880991	37880992	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCGTGGCTGGTG			P-0032463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	339	692	0	ENST00000269571.5:c.2324_2325insCAGCGTGGCTGGTGTGGC	p.Ala775_Gly776insSerValAlaGlyValAla	p.A775_G776insSVAGVA	ENST00000269571		774	atg/aTGGCCAGCGTGGCTGGTGtg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484852	57484852	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	74	432	0	ENST00000371085.3:c.832A>C	p.Asn278His	p.N278H	ENST00000371085	NM_000516.4	278	Aac/Cac																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786896	135786896	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	172	406	0	ENST00000298552.3:c.973C>T	p.Gln325Ter	p.Q325*	ENST00000298552	NM_001162426.1	325	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	226	610	5	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5215339	5215339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs114545401		P-0032464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	121	531	0	ENST00000357368.4:c.4279G>A	p.Ala1427Thr	p.A1427T	ENST00000357368	NM_002850.3	1427	Gcc/Acc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482369	56482369	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	239	560	2	ENST00000267101.3:c.917C>G	p.Pro306Arg	p.P306R	ENST00000267101	NM_001982.3	306	cCt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0032464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	150	458	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3828054	3828054	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	109	557	1	ENST00000262367.5:c.2071C>T	p.Gln691Ter	p.Q691*	ENST00000262367	NM_004380.2	691	Cag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261131	16261131	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	86	360	1	ENST00000375759.3:c.8396A>T	p.Asp2799Val	p.D2799V	ENST00000375759	NM_015001.2	2799	gAc/gTc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161906	47161907	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	160	408	1	ENST00000409792.3:c.4219dup	p.Arg1407LysfsTer8	p.R1407Kfs*8	ENST00000409792	NM_014159.6	1407	agg/aAgg																																																																															
APC	324	MSKCC	GRCh37	5	112175558	112175558	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	213	250	4	ENST00000257430.4:c.4267del	p.Leu1423PhefsTer50	p.L1423Ffs*50	ENST00000257430	NM_000038.5	1423	Ctt/tt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647356	23647356	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	215	721	0	ENST00000261584.4:c.511T>G	p.Leu171Val	p.L171V	ENST00000261584	NM_024675.3	171	Ttg/Gtg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949924	44950016	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTGGTACTTTGGGTTGCTTTATAACTGTTTTTTTTTTTCCTAGCCTGCCAGTATAAATTGGCAGTGGAACGGTACGAATGGAACAAATTGCA	TTTGGTACTTTGGGTTGCTTTATAACTGTTTTTTTTTTTCCTAGCCTGCCAGTATAAATTGGCAGTGGAACGGTACGAATGGAACAAATTGCA	-			P-0032465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	100	190	0	ENST00000377967.4:c.3737-44_3785del		p.X1246_splice	ENST00000377967	NM_021140.2	1246																																																																																
TP53	7157	MSKCC	GRCh37	17	7579334	7579344	+	frameshift_variant	Frame_Shift_Del	DEL	GTCCCAGAATG	GTCCCAGAATG	C			P-0032465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	168	521	0	ENST00000269305.4:c.343_353delinsG	p.His115GlufsTer5	p.H115Efs*5	ENST00000269305	NM_001126112.2	115	CATTCTGGGACa/Ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0032473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	37	397	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0032473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	42	514	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468442	89468442	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	56	351	0	ENST00000336596.2:c.1976A>C	p.Tyr659Ser	p.Y659S	ENST00000336596	NM_005233.5	659	tAc/tCc																																																																															
SDHA	6389	MSKCC	GRCh37	5	226022	226065	+	frameshift_variant	Frame_Shift_Del	DEL	AGCAGAACTGAAGATGGGAAGATTTATCAGCGTGCATTTGGTGG	AGCAGAACTGAAGATGGGAAGATTTATCAGCGTGCATTTGGTGG	-			P-0032476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	18	96	0	ENST00000264932.6:c.482_525del	p.Ser161ThrfsTer19	p.S161Tfs*19	ENST00000264932	NM_004168.2	161	AGCAGAACTGAAGATGGGAAGATTTATCAGCGTGCATTTGGTGGa/a																																																																															
MET	4233	MSKCC	GRCh37	7	116412039	116412057	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAAGGTATATTTCAGTTT	AGAAGGTATATTTCAGTTT	-			P-0032476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	130	900	0	ENST00000397752.3:c.3025_3028+15del		p.X1009_splice	ENST00000397752	NM_000245.2	1009																																																																																
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0032482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	204	534	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	288	695	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115451	115115451	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0032482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	54	663	0	ENST00000257566.3:c.875T>G	p.Leu292Ter	p.L292*	ENST00000257566	NM_016569.3	292	tTa/tGa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16265814	16265814	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	54	679	0	ENST00000375759.3:c.10889del	p.Pro3630ArgfsTer29	p.P3630Rfs*29	ENST00000375759	NM_015001.2	3629	ttC/tt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859467	151859488	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTGGCCTGGGCAGGACTCTG	TCTTGGCCTGGGCAGGACTCTG	-			P-0032499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	43	601	0	ENST00000262189.6:c.11174_11195del	p.Thr3725ArgfsTer13	p.T3725Rfs*13	ENST00000262189	NM_170606.2	3725	aCAGAGTCCTGCCCAGGCCAAGAg/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0032505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	66	407	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0032505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	53	477	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0032505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	32	281	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
BAP1	8314	MSKCC	GRCh37	3	52443864	52443864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	113	817	1	ENST00000460680.1:c.31G>A	p.Asp11Asn	p.D11N	ENST00000460680	NM_004656.3	11	Gac/Aac																																																																															
ATM	472	MSKCC	GRCh37	11	108122567	108122567	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	61	388	0	ENST00000278616.4:c.1611del	p.Ala538GlnfsTer5	p.A538Qfs*5	ENST00000278616	NM_000051.3	537	ccT/cc																																																																															
ATR	545	MSKCC	GRCh37	3	142215227	142215238	+	inframe_deletion	In_Frame_Del	DEL	TTCCACGTACAG	TTCCACGTACAG	-			P-0032505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	49	410	0	ENST00000350721.4:c.5863_5874del	p.Leu1955_Glu1958del	p.L1955_E1958del	ENST00000350721	NM_001184.3	1955	CTGTACGTGGAA/-																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0032510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	185	367	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	136	292	0	ENST00000346208.3:c.1300dup	p.His434ProfsTer73	p.H434Pfs*73	ENST00000346208		433	cac/caCc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860667	151860667	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0032510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	209	478	0	ENST00000262189.6:c.9995T>A	p.Leu3332Ter	p.L3332*	ENST00000262189	NM_170606.2	3332	tTa/tAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0032513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	86	357	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9783226	9783226	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	39	436	0	ENST00000377346.4:c.2470C>G	p.Leu824Val	p.L824V	ENST00000377346	NM_005026.3	824	Ctc/Gtc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89813048	89813051	+	frameshift_variant	Frame_Shift_Del	DEL	CGAC	CGAC	-			P-0032513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	41	561	0	ENST00000389301.3:c.3454_3457del	p.Val1152ThrfsTer13	p.V1152Tfs*13	ENST00000389301	NM_000135.2	1152	GTCGac/ac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602802	10602814	+	frameshift_variant	Frame_Shift_Del	DEL	TGTTCGCAGTCGT	TGTTCGCAGTCGT	-			P-0032513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	144	836	0	ENST00000171111.5:c.764_776del	p.Tyr255CysfsTer18	p.Y255Cfs*18	ENST00000171111	NM_203500.1	255	tACGACTGCGAACAg/tg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910603	50910603	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	77	679	0	ENST00000440232.2:c.1706T>C	p.Leu569Pro	p.L569P	ENST00000440232	NM_002691.3	569	cTg/cCg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905524	50905524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1350	117	904	1	ENST00000440232.2:c.652C>T	p.Arg218Cys	p.R218C	ENST00000440232	NM_002691.3	218	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945469	151945469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1568	127	1119	0	ENST00000262189.6:c.2050C>T	p.Pro684Ser	p.P684S	ENST00000262189	NM_170606.2	684	Cct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	355	457	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0032523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	672	906	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467823	50467823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	45	483	1	ENST00000331340.3:c.1058C>T	p.Pro353Leu	p.P353L	ENST00000331340	NM_006060.4	353	cCg/cTg																																																																															
ATR	545	MSKCC	GRCh37	3	142168389	142168389	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199948706		P-0032523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	102	505	0	ENST00000350721.4:c.7817G>A	p.Arg2606Gln	p.R2606Q	ENST00000350721	NM_001184.3	2606	cGa/cAa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043407	180043407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	341	866	0	ENST00000261937.6:c.3179G>A	p.Arg1060Gln	p.R1060Q	ENST00000261937	NM_182925.4	1060	cGg/cAg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598383	28598383	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0032523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	183	713	0	ENST00000253063.3:c.354+1G>A		p.X118_splice	ENST00000253063	NM_031459.4	118																																																																																
GATA3	2625	MSKCC	GRCh37	10	8100598	8100598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	121	717	0	ENST00000346208.3:c.572C>T	p.Pro191Leu	p.P191L	ENST00000346208		191	cCc/cTc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143130153	143130153	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	48	584	0	ENST00000262992.4:c.863A>G	p.Glu288Gly	p.E288G	ENST00000262992	NM_001101669.1	288	gAg/gGg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584725	187584725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	60	420	0	ENST00000441802.2:c.3308C>T	p.Ser1103Phe	p.S1103F	ENST00000441802	NM_005245.3	1103	tCc/tTc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39074458	39074458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	348	520	0	ENST00000357387.3:c.22C>G	p.Arg8Gly	p.R8G	ENST00000357387	NM_152756.3	8	Cgc/Ggc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910644	29910645	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	149	1045	0	ENST00000376809.5:c.185dup	p.Ser62ArgfsTer37	p.S62Rfs*37	ENST00000376809	NM_002116.7	62	agc/aGgc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31322895	31322896	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCCT			P-0032523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	74	685	0	ENST00000412585.2:c.997_1000dup	p.Arg334LysfsTer25	p.R334Kfs*25	ENST00000412585	NM_005514.6	334	agg/aAGGAgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0032526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	337	497	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
DIS3	22894	MSKCC	GRCh37	13	73350221	73350221	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	17	271	0	ENST00000377767.4:c.664G>C	p.Glu222Gln	p.E222Q	ENST00000377767	NM_014953.3	222	Gaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578262	7578268	+	frameshift_variant	Frame_Shift_Del	DEL	CGGATAA	CGGATAA	-			P-0032526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	340	626	1	ENST00000269305.4:c.581_587del	p.Leu194GlnfsTer51	p.L194Qfs*51	ENST00000269305	NM_001126112.2	194	cTTATCCGa/ca																																																																															
NF1	4763	MSKCC	GRCh37	17	29686004	29686004	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	324	348	0	ENST00000358273.4:c.8132del	p.Leu2711CysfsTer28	p.L2711Cfs*28	ENST00000358273	NM_001042492.2	2711	Ttg/tg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59937165	59937165	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	192	286	0	ENST00000259008.2:c.197C>G	p.Ser66Cys	p.S66C	ENST00000259008	NM_032043.2	66	tCt/tGt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31020719	31020719	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	168	221	0	ENST00000375687.4:c.1016A>G	p.Gln339Arg	p.Q339R	ENST00000375687	NM_015338.5	339	cAg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0032532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	23	500	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0032532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	24	499	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
CBL	867	MSKCC	GRCh37	11	119144591	119144591	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	21	407	0	ENST00000264033.4:c.604T>C	p.Trp202Arg	p.W202R	ENST00000264033	NM_005188.3	202	Tgg/Cgg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58678217	58678217	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	29	616	0	ENST00000305921.3:c.442G>T	p.Ala148Ser	p.A148S	ENST00000305921	NM_003620.3	148	Gct/Tct																																																																															
ALK	238	MSKCC	GRCh37	2	30143219	30143219	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	15	329	0	ENST00000389048.3:c.307G>T	p.Gly103Trp	p.G103W	ENST00000389048	NM_004304.4	103	Ggg/Tgg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460458	149460458	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	22	718	1	ENST00000286301.3:c.179T>C	p.Leu60Pro	p.L60P	ENST00000286301	NM_005211.3	60	cTg/cCg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523291	176523291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	23	621	0	ENST00000292408.4:c.1948C>A	p.Arg650Ser	p.R650S	ENST00000292408	NM_213647.1	650	Cgc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	161	590	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0032534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	25	499	0	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																																
ETV6	2120	MSKCC	GRCh37	12	12043879	12043879	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	38	411	0	ENST00000396373.4:c.1258A>T	p.Met420Leu	p.M420L	ENST00000396373	NM_001987.4	420	Atg/Ttg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211694	36211694	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	53	599	2	ENST00000222270.7:c.1445G>T	p.Arg482Leu	p.R482L	ENST00000222270	NM_014727.1	482	cGg/cTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55971006	55971006	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	50	668	0	ENST00000263923.4:c.1791G>C	p.Glu597Asp	p.E597D	ENST00000263923	NM_002253.2	597	gaG/gaC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518845	187518845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	27	458	0	ENST00000441802.2:c.12359G>T	p.Arg4120Met	p.R4120M	ENST00000441802	NM_005245.3	4120	aGg/aTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0032552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	103	447	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382152	152382154	+	inframe_deletion	In_Frame_Del	DEL	TGG	TGG	-			P-0032552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	159	493	0	ENST00000206249.3:c.1265_1267del	p.Val422del	p.V422del	ENST00000206249	NM_000125.3	421	aTGGtg/atg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160759	56160759	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0032552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	117	351	0	ENST00000399503.3:c.1033C>T	p.Gln345Ter	p.Q345*	ENST00000399503	NM_005921.1	345	Cag/Tag																																																																															
TET2	54790	MSKCC	GRCh37	4	106157119	106157119	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	196	467	2	ENST00000380013.4:c.2020C>T	p.Gln674Ter	p.Q674*	ENST00000380013	NM_001127208.2	674	Cag/Tag																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805369	32805369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	179	468	1	ENST00000374899.4:c.553G>A	p.Asp185Asn	p.D185N	ENST00000374899	NM_018833.2	185	Gac/Aac																																																																															
NF1	4763	MSKCC	GRCh37	17	29553529	29553536	+	frameshift_variant	Frame_Shift_Del	DEL	TGTTTCTG	TGTTTCTG	-			P-0032552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	73	380	0	ENST00000358273.4:c.2080_2087del	p.Phe694GlufsTer3	p.F694Efs*3	ENST00000358273	NM_001042492.2	693	aTGTTTCTG/a																																																																															
NF1	4763	MSKCC	GRCh37	17	29576084	29576085	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCTCCTC			P-0032552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	67	580	0	ENST00000358273.4:c.4058_4064dup	p.Glu1356LeufsTer26	p.E1356Lfs*26	ENST00000358273	NM_001042492.2	1353	tcc/tCCTCCTCcc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619125	1619125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	156	536	0	ENST00000344749.5:c.1435C>T	p.Pro479Ser	p.P479S	ENST00000344749	NM_001136139.2	479	Ccc/Tcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218360	36218360	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	227	713	0	ENST00000222270.7:c.4139C>G	p.Ser1380Ter	p.S1380*	ENST00000222270	NM_014727.1	1380	tCa/tGa																																																																															
MYC	4609	MSKCC	GRCh37	8	128752659	128752659	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	68	235	0	ENST00000377970.2:c.820G>T	p.Glu274Ter	p.E274*	ENST00000377970	NM_002467.4	274	Gag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711913	89711913	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0032565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	77	621	0	ENST00000371953.3:c.531T>A	p.Tyr177Ter	p.Y177*	ENST00000371953	NM_000314.4	177	taT/taA																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864158	57864158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	44	593	0	ENST00000228682.2:c.1635C>A	p.Ser545Arg	p.S545R	ENST00000228682	NM_005269.2	545	agC/agA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	75	801	0	ENST00000269305.4:c.455C>G	p.Pro152Arg	p.P152R	ENST00000269305	NM_001126112.2	152	cCg/cGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420493	49420493	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs727503979		P-0032566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	77	622	0	ENST00000301067.7:c.15256C>T	p.Arg5086Ter	p.R5086*	ENST00000301067	NM_003482.3	5086	Cga/Tga																																																																															
RB1	5925	MSKCC	GRCh37	13	48934155	48934155	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0032566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	33	301	1	ENST00000267163.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000267163	NM_000321.2	204	Gaa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087480	27087480	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	75	666	0	ENST00000324856.7:c.2054C>G	p.Thr685Ser	p.T685S	ENST00000324856	NM_006015.4	685	aCc/aGc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929126	32929126	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	67	426	0	ENST00000380152.3:c.7136G>C	p.Gly2379Ala	p.G2379A	ENST00000380152		2379	gGa/gCa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89371731	89371731	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	58	515	0	ENST00000301030.4:c.109A>T	p.Thr37Ser	p.T37S	ENST00000301030	NM_001256183.1	37	Acc/Tcc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138461563	138461563	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	90	475	0	ENST00000289153.2:c.458del	p.Arg153ProfsTer20	p.R153Pfs*20	ENST00000289153	NM_006219.2	153	cGc/cc																																																																															
KDR	3791	MSKCC	GRCh37	4	55987285	55987285	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	51	469	0	ENST00000263923.4:c.140N>A	p.Thr47Lys	p.T47K	ENST00000263923	NM_002253.2	47	aCa/aAa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046328	180046328	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	63	503	0	ENST00000261937.6:c.2686del	p.Glu896SerfsTer30	p.E896Sfs*30	ENST00000261937	NM_182925.4	896	Gag/ag																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975390	13975390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	50	403	0	ENST00000405192.2:c.497C>T	p.Pro166Leu	p.P166L	ENST00000405192	NM_001163147.1	166	cCa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577113	7577113	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	174	725	0	ENST00000269305.4:c.825T>G	p.Cys275Trp	p.C275W	ENST00000269305	NM_001126112.2	275	tgT/tgG																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057682	27057682	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	171	720	0	ENST00000324856.7:c.1390C>T	p.Gln464Ter	p.Q464*	ENST00000324856	NM_006015.4	464	Caa/Taa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967203	134967203	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	232	455	0	ENST00000398015.3:c.2542G>T	p.Asp848Tyr	p.D848Y	ENST00000398015	NM_004441.4	848	Gac/Tac																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967301	134967301	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	228	477	2	ENST00000398015.3:c.2640G>C	p.Lys880Asn	p.K880N	ENST00000398015	NM_004441.4	880	aaG/aaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	127	584	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0032620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	84	336	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	221	946	0	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226253401	226253401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	39	206	0	ENST00000366813.1:c.173C>T	p.Ser58Phe	p.S58F	ENST00000366813		58	tCc/tTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432581	49432581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	189	852	0	ENST00000301067.7:c.8558C>T	p.Pro2853Leu	p.P2853L	ENST00000301067	NM_003482.3	2853	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112173766	112173766	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	69	449	0	ENST00000257430.4:c.2477del	p.Leu826Ter	p.L826*	ENST00000257430	NM_000038.5	825	taT/ta																																																																															
EGFR	1956	MSKCC	GRCh37	7	55223523	55223523	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	188	863	0	ENST00000275493.2:c.890G>A	p.Arg297His	p.R297H	ENST00000275493	NM_005228.3	297	cGt/cAt																																																																															
ARAF	369	MSKCC	GRCh37	X	47426043	47426043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	166	773	0	ENST00000377045.4:c.563G>A	p.Arg188His	p.R188H	ENST00000377045	NM_001654.4	188	cGc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0032630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	71	455	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247190	153247190	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	57	324	0	ENST00000281708.4:c.1612C>A	p.Gln538Lys	p.Q538K	ENST00000281708	NM_033632.3	538	Cag/Aag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028828	47028855	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTCGCGAGTATGGCAGCCAGGAGGGC	TCCTCGCGAGTATGGCAGCCAGGAGGGC	-			P-0032630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	134	693	0	ENST00000329236.7:c.132_159del	p.Tyr44Ter	p.Y44*	ENST00000329236	NM_001204466.1	44	taTCCTCGCGAGTATGGCAGCCAGGAGGGC/ta																																																																															
AR	367	MSKCC	GRCh37	X	66765779	66765779	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	70	1023	0	ENST00000374690.3:c.791G>T	p.Arg264Leu	p.R264L	ENST00000374690	NM_000044.3	264	cGg/cTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0032635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	194	350	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0032635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	194	597	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243505	46243526	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGTTGTTCGTGTTGATTCTG	TCTGTTGTTCGTGTTGATTCTG	-			P-0032635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	94	370	0	ENST00000334344.6:c.1859_1880del	p.Ser620PhefsTer20	p.S620Ffs*20	ENST00000334344	NM_152641.2	620	TCTGTTGTTCGTGTTGATTCTGtt/tt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0032670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	450	566	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0032670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	543	864	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
B2M	567	MSKCC	GRCh37	15	45007818	45007818	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	119	477	0	ENST00000558401.1:c.265G>T	p.Glu89Ter	p.E89*	ENST00000558401	NM_004048.2	89	Gaa/Taa																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197187	26197187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	107	614	0	ENST00000356476.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000356476		98	Gag/Aag																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39074437	39074437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	275	480	0	ENST00000357387.3:c.43G>A	p.Val15Ile	p.V15I	ENST00000357387	NM_152756.3	15	Gta/Ata																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343250	118343250	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	69	363	0	ENST00000534358.1:c.1376C>G	p.Ser459Cys	p.S459C	ENST00000534358	NM_005933.3	459	tCt/tGt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343259	118343259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	68	368	0	ENST00000534358.1:c.1385C>T	p.Ser462Leu	p.S462L	ENST00000534358	NM_005933.3	462	tCa/tTa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343271	118343271	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	64	368	1	ENST00000534358.1:c.1397del	p.Ser466PhefsTer101	p.S466Ffs*101	ENST00000534358	NM_005933.3	466	tCt/tt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109708	115109709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0032670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	193	990	0	ENST00000257566.3:c.2168_2169dup	p.Ile724AlafsTer166	p.I724Afs*166	ENST00000257566	NM_016569.3	723	-/GC																																																																															
MSH2	4436	MSKCC	GRCh37	2	47657012	47657012	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	96	334	0	ENST00000233146.2:c.1208A>C	p.Asp403Ala	p.D403A	ENST00000233146	NM_000251.2	403	gAt/gCt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719840	61719840	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	182	619	0	ENST00000401558.2:c.1428G>C	p.Met476Ile	p.M476I	ENST00000401558	NM_003400.3	476	atG/atC																																																																															
IDH1	3417	MSKCC	GRCh37	2	209104718	209104718	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	68	320	0	ENST00000345146.2:c.860C>G	p.Ser287Cys	p.S287C	ENST00000345146	NM_005896.2	287	tCt/tGt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056240	26056240	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	157	628	0	ENST00000343677.2:c.417G>T	p.Lys139Asn	p.K139N	ENST00000343677	NM_005319.3	139	aaG/aaT																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73774840	73774926	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGGGGAGCGGAAACCGCCCAGCCCTCCCCCGGCTCCAGGCCTTTGTCTTACCTGCAGCGCACCGATGGCTGCGCTCTGAAACCTCAG	CGGGGAGCGGAAACCGCCCAGCCCTCCCCCGGCTCCAGGCCTTTGTCTTACCTGCAGCGCACCGATGGCTGCGCTCTGAAACCTCAG	T			P-0032670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	128	790	0	ENST00000254810.4:c.247_283-36delinsA		p.X83_splice	ENST00000254810	NM_005324.3	83																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	168	511	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0032677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	134	726	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
PGR	5241	MSKCC	GRCh37	11	100962529	100962529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	90	557	1	ENST00000325455.5:c.1868G>A	p.Arg623His	p.R623H	ENST00000325455	NM_001202474.3	623	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0032683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	23	659	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770071	56770071	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	34	479	0	ENST00000337432.4:c.67G>T	p.Val23Leu	p.V23L	ENST00000337432	NM_058216.2	23	Gtg/Ttg																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770083	56770083	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	33	480	0	ENST00000337432.4:c.79C>G	p.Leu27Val	p.L27V	ENST00000337432	NM_058216.2	27	Ctg/Gtg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287280	33287280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	52	501	1	ENST00000374542.5:c.1817G>A	p.Gly606Asp	p.G606D	ENST00000374542	NM_001141970.1	606	gGc/gAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76845334	76845334	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	34	388	0	ENST00000373344.5:c.6187G>C	p.Glu2063Gln	p.E2063Q	ENST00000373344	NM_000489.3	2063	Gaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0032689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	87	569	1	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044901	47044901	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	108	863	0	ENST00000329236.7:c.1993G>T	p.Glu665Ter	p.E665*	ENST00000329236	NM_001204466.1	665	Gag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056140	27056140	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0032689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	29	349	0	ENST00000324856.7:c.1138-2A>T		p.X380_splice	ENST00000324856	NM_006015.4	380																																																																																
NUF2	83540	MSKCC	GRCh37	1	163309260	163309260	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	34	318	0	ENST00000271452.3:c.599A>C	p.Gln200Pro	p.Q200P	ENST00000271452	NM_145697.2	200	cAa/cCa																																																																															
IGF2	3481	MSKCC	GRCh37	11	2156639	2156640	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0032689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	67	565	2	ENST00000434045.2:c.282_283delinsCT	p.Asp95Tyr	p.D95Y	ENST00000434045	NM_001127598.1	94	gtGGac/gtCTac																																																																															
FLT3	2322	MSKCC	GRCh37	13	28623550	28623550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	69	450	2	ENST00000241453.7:c.1007C>A	p.Pro336His	p.P336H	ENST00000241453	NM_004119.2	336	cCc/cAc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95571442	95571442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	30	243	0	ENST00000343455.3:c.3235G>A	p.Gly1079Ser	p.G1079S	ENST00000343455	NM_177438.2	1079	Ggc/Agc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119706	17119706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	44	436	0	ENST00000285071.4:c.1288G>T	p.Val430Leu	p.V430L	ENST00000285071	NM_144997.5	430	Gtg/Ttg																																																																															
TP63	8626	MSKCC	GRCh37	3	189586483	189586483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	52	359	0	ENST00000264731.3:c.1107G>T	p.Lys369Asn	p.K369N	ENST00000264731	NM_003722.4	369	aaG/aaT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542629	187542629	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	34	503	1	ENST00000441802.2:c.5111G>T	p.Gly1704Val	p.G1704V	ENST00000441802	NM_005245.3	1704	gGa/gTa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589161	67589161	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	18	284	0	ENST00000274335.5:c.1149A>G	p.Ile383Met	p.I383M	ENST00000274335		383	atA/atG																																																																															
STK11	6794	MSKCC	GRCh37	19	1207038	1207039	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	T			P-0032689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	80	618	0	ENST00000326873.7:c.126_127delinsT	p.Ala43ProfsTer8	p.A43Pfs*8	ENST00000326873	NM_000455.4	42	cgGGcc/cgTcc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162077	47162078	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	51	341	0	ENST00000409792.3:c.4048dup	p.Ser1350PhefsTer6	p.S1350Ffs*6	ENST00000409792	NM_014159.6	1350	tca/tTca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	141	528	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	243	622	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																																																															
BLM	641	MSKCC	GRCh37	15	91298115	91298115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	116	330	0	ENST00000355112.3:c.1034C>A	p.Pro345His	p.P345H	ENST00000355112	NM_000057.2	345	cCt/cAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40757401	40757401	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1240	181	616	0	ENST00000373198.4:c.2897A>G	p.Tyr966Cys	p.Y966C	ENST00000373198	NM_133170.3	966	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112175749	112175750	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0032696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	93	334	0	ENST00000257430.4:c.4459_4460dup	p.Leu1489TyrfsTer19	p.L1489Yfs*19	ENST00000257430	NM_000038.5	1486	-/AC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	256	535	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968867	15968867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	103	443	0	ENST00000268712.3:c.4883G>A	p.Arg1628His	p.R1628H	ENST00000268712	NM_006311.3	1628	cGt/cAt																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086205	16086205	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	31	352	0	ENST00000281043.3:c.1381G>T	p.Ala461Ser	p.A461S	ENST00000281043	NM_005378.4	461	Gct/Tct																																																																															
POLE	5426	MSKCC	GRCh37	12	133201565	133201565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	136	490	0	ENST00000320574.5:c.6673C>T	p.Arg2225Cys	p.R2225C	ENST00000320574	NM_006231.2	2225	Cgc/Tgc																																																																															
NF1	4763	MSKCC	GRCh37	17	29667552	29667552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	111	484	0	ENST00000358273.4:c.6951G>T	p.Trp2317Cys	p.W2317C	ENST00000358273	NM_001042492.2	2317	tgG/tgT																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198273279	198273279	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	43	390	0	ENST00000335508.6:c.931G>C	p.Ala311Pro	p.A311P	ENST00000335508	NM_012433.2	311	Gct/Cct																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212587152	212587152	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	61	450	0	ENST00000342788.4:c.849C>A	p.Tyr283Ter	p.Y283*	ENST00000342788	NM_005235.2	283	taC/taA																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204655	128204655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	66	480	0	ENST00000341105.2:c.786C>A	p.Ser262Arg	p.S262R	ENST00000341105	NM_032638.4	262	agC/agA																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149495468	149495468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	143	639	0	ENST00000261799.4:c.3179G>A	p.Cys1060Tyr	p.C1060Y	ENST00000261799	NM_002609.3	1060	tGt/tAt																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43745355	43745355	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	138	506	0	ENST00000523873.1:c.268G>T	p.Glu90Ter	p.E90*	ENST00000523873		90	Gag/Tag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393703	139393703	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	32	459	0	ENST00000277541.6:c.5943C>G	p.Ile1981Met	p.I1981M	ENST00000277541	NM_017617.3	1981	atC/atG																																																																															
MED12	9968	MSKCC	GRCh37	X	70348454	70348454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	35	479	0	ENST00000374080.3:c.3361G>T	p.Asp1121Tyr	p.D1121Y	ENST00000374080		1121	Gac/Tac																																																																															
MTOR	2475	MSKCC	GRCh37	1	11303273	11303276	+	missense_variant	Missense_Mutation	ONP	AGGG	AGGG	CGGC			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	64	497	0	ENST00000361445.4:c.1307_1310delinsGCCG	p.Ala436_Leu437delinsGlyArg	p.A436_L437delinsGR	ENST00000361445	NM_004958.3	436	gCCCTg/gGCCGg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061854	38061862	+	inframe_deletion	In_Frame_Del	DEL	GTTCATGGA	GTTCATGGA	-			P-0032757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	109	575	0	ENST00000250448.2:c.127_135delTCCATGAAC	p.Ser43_Asn45del	p.S43_N45del	ENST00000250448	NM_004496.3	43	TCCATGAAC/-																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061232	38061234	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0032757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	109	392	0	ENST00000250448.2:c.755_757del	p.Asn252del	p.N252del	ENST00000250448	NM_004496.3	252	aACAtg/atg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222501	2222501	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	113	547	0	ENST00000326181.6:c.695G>C	p.Arg232Pro	p.R232P	ENST00000326181	NM_032271.2	232	cGg/cCg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19261498	19261498	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	117	483	0	ENST00000162023.5:c.47A>T	p.Asn16Ile	p.N16I	ENST00000162023		16	aAt/aTt																																																																															
AXL	558	MSKCC	GRCh37	19	41745212	41745212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	85	416	0	ENST00000301178.4:c.1278G>T	p.Trp426Cys	p.W426C	ENST00000301178	NM_021913.4	426	tgG/tgT																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375181	31375181	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	99	480	0	ENST00000328111.2:c.578A>T	p.Gln193Leu	p.Q193L	ENST00000328111	NM_006892.3	193	cAg/cTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155571	56155571	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	67	284	0	ENST00000399503.3:c.663T>G	p.Asp221Glu	p.D221E	ENST00000399503	NM_005921.1	221	gaT/gaG																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156737	20156737	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	108	410	0	ENST00000379607.5:c.20A>G	p.Lys7Arg	p.K7R	ENST00000379607	NM_001412.3	7	aAa/aGa																																																																															
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	93	276	0	ENST00000257430.4:c.2805C>G	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taG																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248153	110248153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	58	384	0	ENST00000374672.4:c.1319C>T	p.Ser440Leu	p.S440L	ENST00000374672	NM_004235.4	440	tCa/tTa																																																																															
TET1	80312	MSKCC	GRCh37	10	70446282	70446282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	128	376	0	ENST00000373644.4:c.5222G>T	p.Arg1741Leu	p.R1741L	ENST00000373644	NM_030625.2	1741	cGc/cTc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38967262	38967262	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0032784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	31	172	0	ENST00000357387.3:c.1218+1G>T		p.X406_splice	ENST00000357387	NM_152756.3	406																																																																																
RPTOR	57521	MSKCC	GRCh37	17	78811796	78811796	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0032784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	54	364	0	ENST00000306801.3:c.1212+1del		p.R404fs	ENST00000306801	NM_020761.2	404	cGg/cg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220380	1220380	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	124	443	1	ENST00000326873.7:c.473del	p.Cys158PhefsTer3	p.C158Ffs*3	ENST00000326873	NM_000455.4	158	tGt/tt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39222462	39222462	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	60	575	0	ENST00000402219.2:c.3148A>G	p.Met1050Val	p.M1050V	ENST00000402219	NM_005633.3	1050	Atg/Gtg																																																																															
MED12	9968	MSKCC	GRCh37	X	70352982	70352982	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	53	409	0	ENST00000374080.3:c.4537A>G	p.Asn1513Asp	p.N1513D	ENST00000374080		1513	Aat/Gat																																																																															
MET	4233	MSKCC	GRCh37	7	116411902	116411902	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0019023-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			841	162	796	0	ENST00000397752.3:c.2888-1G>A		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0031962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	48	668	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	99	713	0	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0031962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	54	385	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910883	114910883	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0031962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	84	449	0	ENST00000543371.1:c.1001+1G>A		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																																
ATM	472	MSKCC	GRCh37	11	108121648	108121648	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	92	485	0	ENST00000278616.4:c.1456A>G	p.Lys486Glu	p.K486E	ENST00000278616	NM_000051.3	486	Aaa/Gaa																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29099520	29099520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	52	293	5	ENST00000328354.6:c.881C>T	p.Ala294Val	p.A294V	ENST00000328354	NM_007194.3	294	gCa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0031968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	292	720	4	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552922	106552922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	85	689	0	ENST00000369096.4:c.887G>A	p.Arg296Gln	p.R296Q	ENST00000369096	NM_001198.3	296	cGg/cAg																																																																															
IL10	3586	MSKCC	GRCh37	1	206944759	206944759	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0031968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	59	413	0	ENST00000423557.1:c.167A>G	p.Gln56Arg	p.Q56R	ENST00000423557	NM_000572.2	56	cAa/cGa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549247	21549247	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	112	789	0	ENST00000382592.4:c.3029del	p.Pro1010LeufsTer62	p.P1010Lfs*62	ENST00000382592	NM_014572.2	1010	cCt/ct																																																																															
APC	324	MSKCC	GRCh37	5	112174236	112174236	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	183	311	0	ENST00000257430.4:c.2945C>A	p.Ser982Ter	p.S982*	ENST00000257430	NM_000038.5	982	tCg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	135	537	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0031988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	220	651	1	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867343	45867343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	151	546	1	ENST00000391945.4:c.850G>A	p.Glu284Lys	p.E284K	ENST00000391945	NM_000400.3	284	Gag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061313	38061313	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	100	750	0	ENST00000250448.2:c.676G>T	p.Asp226Tyr	p.D226Y	ENST00000250448	NM_004496.3	226	Gac/Tac																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260845	16260845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	62	573	0	ENST00000375759.3:c.8110G>T	p.Val2704Leu	p.V2704L	ENST00000375759	NM_015001.2	2704	Gtg/Ttg																																																																															
POLE	5426	MSKCC	GRCh37	12	133241910	133241912	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0031990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	88	582	0	ENST00000320574.5:c.2444_2446del	p.Phe815del	p.F815del	ENST00000320574	NM_006231.2	815	tTCTat/tat																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119969	70119969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	25	257	0	ENST00000245479.2:c.971C>T	p.Thr324Ile	p.T324I	ENST00000245479	NM_000346.3	324	aCc/aTc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37649122	37649122	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	194	338	0	ENST00000447079.4:c.2229del	p.Ala744ProfsTer9	p.A744Pfs*9	ENST00000447079	NM_015083.1	743	Aaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0032003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	185	682	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55138667	55138667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	50	446	0	ENST00000257290.5:c.1344G>A	p.Met448Ile	p.M448I	ENST00000257290	NM_006206.4	448	atG/atA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0032004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	360	716	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	464	777	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	370	842	1	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120510849	120510849	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	48	434	0	ENST00000256646.2:c.1115T>G	p.Leu372Arg	p.L372R	ENST00000256646	NM_024408.3	372	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0032010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	28	594	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0032010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	85	705	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0032010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	60	494	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs778405030		P-0032010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	42	313	0	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395643	45395643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	61	395	1	ENST00000262160.6:c.491C>T	p.Pro164Leu	p.P164L	ENST00000262160	NM_005901.5	164	cCt/cTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29556484	29556484	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0032010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	21	343	0	ENST00000358273.4:c.2850+1G>A		p.X950_splice	ENST00000358273	NM_001042492.2	950																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66286229	66286229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	45	546	0	ENST00000273854.3:c.1457C>T	p.Ser486Phe	p.S486F	ENST00000273854	NM_004439.5	486	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	94	684	0	ENST00000269305.4:c.532delC	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906933	32906933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	53	483	0	ENST00000380152.3:c.1318C>T	p.Leu440Phe	p.L440F	ENST00000380152		440	Ctt/Ttt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420315	88420315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	47	453	1	ENST00000360948.2:c.2371C>T	p.Arg791Trp	p.R791W	ENST00000360948	NM_001012338.2	791	Cgg/Tgg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467873	50467873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	44	413	0	ENST00000331340.3:c.1108G>A	p.Val370Met	p.V370M	ENST00000331340	NM_006060.4	370	Gtg/Atg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859595	57859595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	73	545	1	ENST00000228682.2:c.649G>A	p.Gly217Arg	p.G217R	ENST00000228682	NM_005269.2	217	Ggg/Agg																																																																															
APC	324	MSKCC	GRCh37	5	112174936	112174936	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	39	241	0	ENST00000257430.4:c.3645del	p.Ser1215ArgfsTer50	p.S1215Rfs*50	ENST00000257430	NM_000038.5	1215	agT/ag																																																																															
JAK2	3717	MSKCC	GRCh37	9	5123041	5123042	+	missense_variant	Missense_Mutation	DNP	GT	GT	AG			P-0032017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	53	512	0	ENST00000381652.3:c.3097_3098delinsAG	p.Val1033Arg	p.V1033R	ENST00000381652	NM_004972.3	1033	GTg/AGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0032018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	89	385	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0032018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	82	724	1	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0032018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	187	535	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89877149	89877149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	55	479	0	ENST00000389301.3:c.488G>A	p.Arg163His	p.R163H	ENST00000389301	NM_000135.2	163	cGt/cAt																																																																															
SRC	6714	MSKCC	GRCh37	20	36022675	36022675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	159	460	1	ENST00000358208.4:c.548C>A	p.Thr183Lys	p.T183K	ENST00000358208		183	aCg/aAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266047	41266630	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	AACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATC	AACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATC	-			P-0032018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	50	309	0	ENST00000349496.5:c.46_429del		p.X16_splice	ENST00000349496	NM_001904.3	16	gAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCaa/gaa																																																																															
APC	324	MSKCC	GRCh37	5	112154885	112154885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	93	594	1	ENST00000257430.4:c.1156G>A	p.Ala386Thr	p.A386T	ENST00000257430	NM_000038.5	386	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7579383	7579383	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	528	760	0	ENST00000269305.4:c.304del	p.Thr102ProfsTer21	p.T102Pfs*21	ENST00000269305	NM_001126112.2	102	Acc/cc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936558	49936558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	84	759	0	ENST00000296474.3:c.1369G>T	p.Asp457Tyr	p.D457Y	ENST00000296474	NM_002447.2	457	Gac/Tac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100906	41100906	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	26	527	0	ENST00000373198.4:c.1450G>A	p.Val484Ile	p.V484I	ENST00000373198	NM_133170.3	484	Gtt/Att																																																																															
MET	4233	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0032029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	166	942	0	ENST00000397752.3:c.3028+3A>G		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
ASXL2	55252	MSKCC	GRCh37	2	26022307	26022307	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	72	779	0	ENST00000435504.4:c.350G>T	p.Ser117Ile	p.S117I	ENST00000435504		117	aGc/aTc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864639	68864639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	11	205	0	ENST00000288368.4:c.10G>A	p.Asp4Asn	p.D4N	ENST00000288368	NM_024870.2	4	Gac/Aac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0032030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	62	367	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
CDH1	999	MSKCC	GRCh37	16	68847286	68847286	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	155	551	0	ENST00000261769.5:c.1212delC	p.Asn405IlefsTer12	p.N405Ifs*12	ENST00000261769	NM_004360.3	403	gCc/gc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945066	151945066	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138111015		P-0032030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	56	707	4	ENST00000262189.6:c.2453C>T	p.Ser818Leu	p.S818L	ENST00000262189	NM_170606.2	818	tCa/tTa																																																																															
RAD51	5888	MSKCC	GRCh37	15	41023350	41023350	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	145	573	0	ENST00000267868.3:c.994G>C	p.Asp332His	p.D332H	ENST00000267868	NM_002875.4	332	Gat/Cat																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118347584	118347584	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	139	467	0	ENST00000534358.1:c.3221G>C	p.Arg1074Thr	p.R1074T	ENST00000534358	NM_005933.3	1074	aGa/aCa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32936814	32936814	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	72	389	0	ENST00000380152.3:c.7960C>G	p.Leu2654Val	p.L2654V	ENST00000380152		2654	Ctt/Gtt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937320	32937320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	76	332	0	ENST00000380152.3:c.7981G>A	p.Asp2661Asn	p.D2661N	ENST00000380152		2661	Gat/Aat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47108581	47108581	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	119	501	0	ENST00000409792.3:c.6088C>T	p.Gln2030Ter	p.Q2030*	ENST00000409792	NM_014159.6	2030	Caa/Taa																																																																															
ATR	545	MSKCC	GRCh37	3	142217556	142217556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	139	554	0	ENST00000350721.4:c.5441G>C	p.Arg1814Thr	p.R1814T	ENST00000350721	NM_001184.3	1814	aGa/aCa																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383773	84383773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	134	750	0	ENST00000321945.7:c.1079C>T	p.Ser360Phe	p.S360F	ENST00000321945	NM_139076.2	360	tCt/tTt																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271202	26271202	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			P-0032030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	71	378	0	ENST00000305910.3:c.411G>C	p.Ter137TyrextTer?	p.*137Yext*?	ENST00000305910	NM_003534.2	137	taG/taC																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910549	29910549	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45585732		P-0032031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	24	591	0	ENST00000376809.5:c.89G>A	p.Arg30Lys	p.R30K	ENST00000376809	NM_002116.7	30	aGg/aAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76907798	76907798	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	100	397	0	ENST00000373344.5:c.4363G>T	p.Glu1455Ter	p.E1455*	ENST00000373344	NM_000489.3	1455	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0032032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	157	751	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0032032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	467	840	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0032032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	97	428	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112170865	112170865	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0032032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	142	512	0	ENST00000257430.4:c.1958+3A>G		p.X653_splice	ENST00000257430	NM_000038.5	653																																																																																
SMYD3	64754	MSKCC	GRCh37	1	246498726	246498726	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	254	769	0	ENST00000388985.4:c.279C>A	p.Cys93Ter	p.C93*	ENST00000388985		93	tgC/tgA																																																																															
KIT	3815	MSKCC	GRCh37	4	55573425	55573425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	84	472	0	ENST00000288135.5:c.1087C>T	p.Pro363Ser	p.P363S	ENST00000288135	NM_000222.2	363	Ccc/Tcc																																																																															
KIT	3815	MSKCC	GRCh37	4	55573451	55573451	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0032032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	56	369	0	ENST00000288135.5:c.1113C>G	p.Ile371Met	p.I371M	ENST00000288135	NM_000222.2	371	atC/atG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0032034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	23	342	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
AKT1	207	MSKCC	GRCh37	14	105243048	105243048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	89	892	0	ENST00000349310.3:c.235C>A	p.Gln79Lys	p.Q79K	ENST00000349310	NM_001014432.1	79	Cag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874261	151874261	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0032034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	47	526	0	ENST00000262189.6:c.8277T>G	p.Tyr2759Ter	p.Y2759*	ENST00000262189	NM_170606.2	2759	taT/taG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	298	513	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023696	27023696	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	199	427	0	ENST00000324856.7:c.802C>T	p.Gln268Ter	p.Q268*	ENST00000324856	NM_006015.4	268	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057520007		P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	760	679	0	ENST00000269305.4:c.614A>T	p.Tyr205Phe	p.Y205F	ENST00000269305	NM_001126112.2	205	tAt/tTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602337	10602337	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	900	907	0	ENST00000171111.5:c.1241A>T	p.Asn414Ile	p.N414I	ENST00000171111	NM_203500.1	414	aAc/aTc																																																																															
IDH1	3417	MSKCC	GRCh37	2	209104608	209104608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	361	539	1	ENST00000345146.2:c.970G>A	p.Glu324Lys	p.E324K	ENST00000345146	NM_005896.2	324	Gag/Aag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68972978	68972978	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	140	505	0	ENST00000288368.4:c.1303G>T	p.Gly435Ter	p.G435*	ENST00000288368	NM_024870.2	435	Gga/Tga																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47606170	47606170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	557	607	0	ENST00000263735.4:c.634G>A	p.Val212Met	p.V212M	ENST00000263735	NM_002354.2	212	Gtg/Atg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73343051	73343051	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	269	278	0	ENST00000377767.4:c.1756-1G>T		p.X586_splice	ENST00000377767	NM_014953.3	586																																																																																
TCF3	6929	MSKCC	GRCh37	19	1627416	1627416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	731	743	0	ENST00000344749.5:c.308G>T	p.Gly103Val	p.G103V	ENST00000344749	NM_001136139.2	103	gGt/gTt																																																																															
IDH1	3417	MSKCC	GRCh37	2	209104629	209104629	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	395	575	0	ENST00000345146.2:c.949C>A	p.Arg317Ser	p.R317S	ENST00000345146	NM_005896.2	317	Cgc/Agc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161720	47161720	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	265	423	0	ENST00000409792.3:c.4406T>A	p.Met1469Lys	p.M1469K	ENST00000409792	NM_014159.6	1469	aTg/aAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542313	187542313	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	830	400	0	ENST00000441802.2:c.5427T>A	p.Tyr1809Ter	p.Y1809*	ENST00000441802	NM_005245.3	1809	taT/taA																																																																															
SDHA	6389	MSKCC	GRCh37	5	225569	225570	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	71	137	0	ENST00000264932.6:c.348_349delinsTT	p.Glu116_Asp117delinsAspTyr	p.E116_D117delinsDY	ENST00000264932	NM_004168.2	116	gaGGac/gaTTac																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671880	30671880	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	835	920	0	ENST00000376406.3:c.5080G>T	p.Val1694Phe	p.V1694F	ENST00000376406	NM_014641.2	1694	Gtt/Ttt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526591	106526591	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	461	496	0	ENST00000359195.3:c.2884C>A	p.His962Asn	p.H962N	ENST00000359195	NM_002649.2	962	Cat/Aat																																																																															
SMO	6608	MSKCC	GRCh37	7	128829156	128829156	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	42	140	0	ENST00000249373.3:c.164C>G	p.Thr55Ser	p.T55S	ENST00000249373	NM_005631.4	55	aCt/aGt																																																																															
TEK	7010	MSKCC	GRCh37	9	27213539	27213539	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	206	658	1	ENST00000380036.4:c.2935A>T	p.Lys979Ter	p.K979*	ENST00000380036	NM_000459.3	979	Aaa/Taa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139438477	139438477	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	271	866	1	ENST00000277541.6:c.139G>T	p.Val47Phe	p.V47F	ENST00000277541	NM_017617.3	47	Gtc/Ttc																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944761	31944761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	16	306	0	ENST00000340398.3:c.340G>A	p.Ala114Thr	p.A114T	ENST00000340398	NM_001013699.2	114	Gct/Act																																																																															
RB1	5925	MSKCC	GRCh37	13	49039354	49039354	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	37	720	0	ENST00000267163.4:c.2339C>A	p.Ser780Ter	p.S780*	ENST00000267163	NM_000321.2	780	tCa/tAa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103506156	103506156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	27	281	1	ENST00000355739.4:c.314C>T	p.Thr105Met	p.T105M	ENST00000355739	NM_000123.3	105	aCg/aTg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56367745	56367745	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	27	459	0	ENST00000348428.3:c.571C>T	p.Arg191Ter	p.R191*	ENST00000348428	NM_006785.3	191	Cga/Tga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030470	47030470	+	intron_variant	Intron	SNP	G	G	A			P-0032052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	66	420	2	ENST00000329236.7:c.201+1573G>A		p.*67*	ENST00000329236	NM_001204466.1	67																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0031964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	244	484	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	81	459	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0031964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	34	168	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	105	686	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
KDR	3791	MSKCC	GRCh37	4	55961059	55961059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	46	711	0	ENST00000263923.4:c.2881C>T	p.Arg961Trp	p.R961W	ENST00000263923	NM_002253.2	961	Cgg/Tgg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117868410	117868410	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	38	488	0	ENST00000297338.2:c.932T>A	p.Ile311Lys	p.I311K	ENST00000297338	NM_006265.2	311	aTa/aAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575152	48575152	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	37	484	1	ENST00000342988.3:c.346C>T	p.Gln116Ter	p.Q116*	ENST00000342988	NM_005359.5	116	Cag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164103	47164103	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	48	429	0	ENST00000409792.3:c.2023G>T	p.Gly675Ter	p.G675*	ENST00000409792	NM_014159.6	675	Gga/Tga																																																																															
FH	2271	MSKCC	GRCh37	1	241680490	241680490	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139642944		P-0031952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	71	598	0	ENST00000366560.3:c.259C>T	p.Arg87Cys	p.R87C	ENST00000366560	NM_000143.3	87	Cgc/Tgc																																																																															
CDC42	998	MSKCC	GRCh37	1	22408246	22408246	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	79	658	1	ENST00000344548.3:c.137T>C	p.Ile46Thr	p.I46T	ENST00000344548	NM_001039802.1	46	aTt/aCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	TG			P-0031952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	121	577	1	ENST00000256078.4:c.34_35delinsCA	p.Gly12His	p.G12H	ENST00000256078	NM_033360.2	12	GGt/CAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574030	7574031	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GATCT			P-0031952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	75	611	0	ENST00000269305.4:c.994-2_996dup	p.Gly334SerfsTer13	p.G334Sfs*13	ENST00000269305	NM_001126112.2	332	-/AGATC																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097070	11097070	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	61	757	1	ENST00000344626.4:c.561C>A	p.Tyr187Ter	p.Y187*	ENST00000344626	NM_003072.3	187	taC/taA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	173	415	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	172	535	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21620104	21620104	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	150	610	0	ENST00000382592.4:c.62A>G	p.Glu21Gly	p.E21G	ENST00000382592	NM_014572.2	21	gAg/gGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578217	7578218	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0031932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	291	655	0	ENST00000269305.4:c.631_632del	p.Thr211PhefsTer4	p.T211Ffs*4	ENST00000269305	NM_001126112.2	211	ACt/t																																																																															
TP63	8626	MSKCC	GRCh37	3	189586487	189586492	+	inframe_deletion	In_Frame_Del	DEL	GGTGAT	GGTGAT	-			P-0031932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	80	401	0	ENST00000264731.3:c.1114_1119del	p.Asp372_Gly373del	p.D372_G373del	ENST00000264731	NM_003722.4	371	GGTGAT/-																																																																															
ABL1	25	MSKCC	GRCh37	9	133753915	133753915	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	240	529	0	ENST00000318560.5:c.1384G>C	p.Glu462Gln	p.E462Q	ENST00000318560	NM_005157.4	462	Gaa/Caa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188078	11188078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	451	507	0	ENST00000361445.4:c.6016G>T	p.Val2006Phe	p.V2006F	ENST00000361445	NM_004958.3	2006	Gtc/Ttc																																																																															
EED	8726	MSKCC	GRCh37	11	85956293	85956293	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	150	210	0	ENST00000263360.6:c.22A>C	p.Thr8Pro	p.T8P	ENST00000263360	NM_003797.3	8	Act/Cct																																																																															
RB1	5925	MSKCC	GRCh37	13	48953742	48953742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	267	338	1	ENST00000267163.4:c.1345G>A	p.Gly449Arg	p.G449R	ENST00000267163	NM_000321.2	449	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	467	527	3	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
NF1	4763	MSKCC	GRCh37	17	29670024	29670035	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAGAGTCCAGAG	TAGAGTCCAGAG	ATA			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	313	388	2	ENST00000358273.4:c.7063-3_7071delinsATA		p.X2355_splice	ENST00000358273	NM_001042492.2	2355																																																																																
AXIN2	8313	MSKCC	GRCh37	17	63534463	63534463	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	478	538	1	ENST00000307078.5:c.1060-2A>G		p.X354_splice	ENST00000307078	NM_004655.3	354																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48584593	48584593	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	342	464	1	ENST00000342988.3:c.766C>T	p.Gln256Ter	p.Q256*	ENST00000342988	NM_005359.5	256	Cag/Tag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231558	5231558	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	364	432	0	ENST00000357368.4:c.1918C>G	p.Arg640Gly	p.R640G	ENST00000357368	NM_002850.3	640	Cgc/Ggc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291160	10291160	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	641	722	2	ENST00000340748.4:c.311A>G	p.Asn104Ser	p.N104S	ENST00000340748		104	aAt/aGt																																																																															
RHOA	387	MSKCC	GRCh37	3	49412900	49412900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	624	720	2	ENST00000418115.1:c.123C>G	p.Asn41Lys	p.N41K	ENST00000418115	NM_001664.2	41	aaC/aaG																																																																															
TP63	8626	MSKCC	GRCh37	3	189587119	189587119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	1155	432	3	ENST00000264731.3:c.1136G>A	p.Arg379His	p.R379H	ENST00000264731	NM_003722.4	379	cGt/cAt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86628399	86628399	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	235	449	1	ENST00000274376.6:c.768C>G	p.Tyr256Ter	p.Y256*	ENST00000274376	NM_002890.2	256	taC/taG																																																																															
APC	324	MSKCC	GRCh37	5	112170777	112170780	+	frameshift_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	428	709	0	ENST00000257430.4:c.1875_1878del	p.Asn627LeufsTer2	p.N627Lfs*2	ENST00000257430	NM_000038.5	625	CAGAca/ca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521499	8521499	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	540	694	0	ENST00000356435.5:c.739A>T	p.Ile247Phe	p.I247F	ENST00000356435		247	Atc/Ttc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223602	53223602	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	363	474	1	ENST00000375401.3:c.3757C>G	p.Pro1253Ala	p.P1253A	ENST00000375401	NM_004187.3	1253	Ccg/Gcg																																																																															
APC	324	MSKCC	GRCh37	5	112175375	112175409	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACC	TCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACC	A			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	14	240	0	ENST00000257430.4:c.4084_4118delinsA	p.Ser1362MetfsTer42	p.S1362Mfs*42	ENST00000257430	NM_000038.5	1362	TCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCt/At																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0031938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	54	634	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0031938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	154	801	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593505	48593506	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0031938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	34	376	0	ENST00000342988.3:c.1258_1259dup	p.Ala421ValfsTer16	p.A421Vfs*16	ENST00000342988	NM_005359.5	419	ggg/ggGCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	109	454	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775623976		P-0017779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	45	361	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0017779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	24	365	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0017779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	38	222	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0031853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	88	416	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	63	767	1	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																															
RAD50	10111	MSKCC	GRCh37	5	131924382	131924382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	26	330	0	ENST00000265335.6:c.1055G>A	p.Arg352His	p.R352H	ENST00000265335		352	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577514	7577515	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGA			P-0031853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	166	816	0	ENST00000269305.4:c.764_766dupTCA	p.Ile255dup	p.I255dup	ENST00000269305	NM_001126112.2	255	aca/aTCAca																																																																															
FLT1	2321	MSKCC	GRCh37	13	29004254	29004254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143093353		P-0031853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	56	442	0	ENST00000282397.4:c.1039G>A	p.Val347Ile	p.V347I	ENST00000282397	NM_002019.4	347	Gta/Ata																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18491480	18491480	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0031853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	41	395	0	ENST00000266497.5:c.1393G>T	p.Glu465Ter	p.E465*	ENST00000266497		465	Gag/Tag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3823850	3823850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	93	798	0	ENST00000262367.5:c.2365G>A	p.Ala789Thr	p.A789T	ENST00000262367	NM_004380.2	789	Gct/Act																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965623	25965623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	125	930	0	ENST00000435504.4:c.3583G>A	p.Val1195Met	p.V1195M	ENST00000435504		1195	Gtg/Atg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131924480	131924480	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139372231		P-0031853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	61	466	0	ENST00000265335.6:c.1153C>T	p.Arg385Cys	p.R385C	ENST00000265335		385	Cgt/Tgt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468296	50468296	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	90	563	0	ENST00000331340.3:c.1531C>T	p.Arg511Ter	p.R511*	ENST00000331340	NM_006060.4	511	Cga/Tga																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922307	39922307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	59	351	0	ENST00000378444.4:c.3865G>A	p.Gly1289Ser	p.G1289S	ENST00000378444	NM_001123385.1	1289	Ggc/Agc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073432	8073432	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	161	548	0	ENST00000377482.5:c.1227del	p.Lys409AsnfsTer43	p.K409Nfs*43	ENST00000377482	NM_018948.3	409	aaA/aa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11168275	11168275	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	214	567	0	ENST00000361445.4:c.7597A>G	p.Thr2533Ala	p.T2533A	ENST00000361445	NM_004958.3	2533	Aca/Gca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	157	476	4	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598843	28598843	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146400597		P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	291	728	2	ENST00000253063.3:c.403G>A	p.Glu135Lys	p.E135K	ENST00000253063	NM_031459.4	135	Gag/Aag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65321203	65321203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	140	394	1	ENST00000342505.4:c.1637C>T	p.Pro546Leu	p.P546L	ENST00000342505	NM_002227.2	546	cCc/cTc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	42	382	0	ENST00000342505.4:c.1016delA	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339153	65339153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	141	495	0	ENST00000342505.4:c.383G>A	p.Arg128His	p.R128H	ENST00000342505	NM_002227.2	128	cGt/cAt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851292	156851292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	189	624	0	ENST00000524377.1:c.2249G>A	p.Arg750His	p.R750H	ENST00000524377	NM_002529.3	750	cGt/cAt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162749983	162749983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	136	453	0	ENST00000367921.3:c.2515C>T	p.Arg839Cys	p.R839C	ENST00000367921	NM_006182.2	839	Cgt/Tgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	90	461	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	43	249	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711026	114711028	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	106	179	0	ENST00000543371.1:c.254_256del	p.Glu85del	p.E85del	ENST00000543371	NM_001198531.1	84	GAA/-																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981827	101981827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	50	622	0	ENST00000282441.5:c.248C>T	p.Thr83Ile	p.T83I	ENST00000282441	NM_001130145.2	83	aCc/aTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343132	118343132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	88	375	0	ENST00000534358.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000534358	NM_005933.3	420	Cgg/Tgg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	432352	432352	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	53	199	0	ENST00000399788.2:c.2171A>T	p.Asp724Val	p.D724V	ENST00000399788	NM_001042603.1	724	gAc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420784	49420784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	217	571	0	ENST00000301067.7:c.14965C>T	p.Arg4989Trp	p.R4989W	ENST00000301067	NM_003482.3	4989	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438046	49438046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	247	655	0	ENST00000301067.7:c.5125C>T	p.Arg1709Cys	p.R1709C	ENST00000301067	NM_003482.3	1709	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440536	49440536	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	257	641	0	ENST00000301067.7:c.4274T>C	p.Val1425Ala	p.V1425A	ENST00000301067	NM_003482.3	1425	gTg/gCg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434452	121434452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	187	765	0	ENST00000257555.6:c.1216G>A	p.Ala406Thr	p.A406T	ENST00000257555		406	Gcc/Acc																																																																															
POLE	5426	MSKCC	GRCh37	12	133219552	133219552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	138	569	0	ENST00000320574.5:c.4582G>A	p.Ala1528Thr	p.A1528T	ENST00000320574	NM_006231.2	1528	Gcc/Acc																																																																															
POLE	5426	MSKCC	GRCh37	12	133249827	133249827	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	121	398	0	ENST00000320574.5:c.1396A>G	p.Thr466Ala	p.T466A	ENST00000320574	NM_006231.2	466	Act/Gct																																																																															
FLT1	2321	MSKCC	GRCh37	13	28903854	28903854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	150	496	0	ENST00000282397.4:c.2605G>A	p.Ala869Thr	p.A869T	ENST00000282397	NM_002019.4	869	Gcc/Acc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576090	88576090	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs199642370		P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	104	642	0	ENST00000360948.2:c.1583C>T	p.Thr528Met	p.T528M	ENST00000360948	NM_001012338.2	528	aCg/aTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633171	3633171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	269	806	1	ENST00000294008.3:c.5080G>A	p.Ala1694Thr	p.A1694T	ENST00000294008	NM_032444.2	1694	Gcc/Acc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67662330	67662330	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	184	442	0	ENST00000264010.4:c.1576A>G	p.Ser526Gly	p.S526G	ENST00000264010	NM_006565.3	526	Agc/Ggc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829701	72829701	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	190	720	0	ENST00000268489.5:c.6880C>T	p.Arg2294Ter	p.R2294*	ENST00000268489	NM_006885.3	2294	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	152	586	2	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	147	475	1	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341523	89341524	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	187	537	1	ENST00000301030.4:c.7546_7547delinsTT	p.Arg2516Phe	p.R2516F	ENST00000301030	NM_001256183.1	2516	CGt/TTt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349356	89349356	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	264	945	2	ENST00000301030.4:c.3594del	p.Glu1199ArgfsTer119	p.E1199Rfs*119	ENST00000301030	NM_001256183.1	1198	aaA/aa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349717	89349717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	142	854	1	ENST00000301030.4:c.3233C>T	p.Ala1078Val	p.A1078V	ENST00000301030	NM_001256183.1	1078	gCg/gTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357122	89357122	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200994100		P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	224	703	1	ENST00000301030.4:c.512G>A	p.Arg171His	p.R171H	ENST00000301030	NM_001256183.1	171	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579419	7579420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	209	625	0	ENST00000269305.4:c.267dup	p.Ser90LeufsTer59	p.S90Lfs*59	ENST00000269305	NM_001126112.2	89	-/C																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	92	462	0	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17124920	17124920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	177	451	0	ENST00000285071.4:c.802C>T	p.Arg268Trp	p.R268W	ENST00000285071	NM_144997.5	268	Cgg/Tgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29486046	29486046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	25	362	0	ENST00000358273.4:c.223G>A	p.Ala75Thr	p.A75T	ENST00000358273	NM_001042492.2	75	Gct/Act																																																																															
NF1	4763	MSKCC	GRCh37	17	29685596	29685596	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	85	503	1	ENST00000358273.4:c.8069A>G	p.Tyr2690Cys	p.Y2690C	ENST00000358273	NM_001042492.2	2690	tAc/tGc																																																																															
RARA	5914	MSKCC	GRCh37	17	38504637	38504637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	239	660	0	ENST00000254066.5:c.248G>A	p.Arg83His	p.R83H	ENST00000254066	NM_000964.3	83	cGc/cAc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40874920	40874920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	91	573	0	ENST00000428826.2:c.380C>T	p.Thr127Met	p.T127M	ENST00000428826		127	aCg/aTg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59858199	59858199	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	97	400	0	ENST00000259008.2:c.1794+2T>C		p.X598_splice	ENST00000259008	NM_032043.2	598																																																																																
TCF3	6929	MSKCC	GRCh37	19	1612209	1612209	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	134	422	0	ENST00000344749.5:c.1810C>T	p.Arg604Ter	p.R604*	ENST00000344749	NM_001136139.2	604	Cga/Tga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145614	11145614	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1482864360		P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	171	464	0	ENST00000358026.2:c.3976G>A	p.Glu1326Lys	p.E1326K	ENST00000358026	NM_001128849.1	1326	Gag/Aag																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375544	15375544	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	261	813	1	ENST00000263377.2:c.883A>C	p.Thr295Pro	p.T295P	ENST00000263377	NM_058243.2	295	Acc/Ccc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278070	18278070	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	248	604	0	ENST00000222254.8:c.1690A>G	p.Lys564Glu	p.K564E	ENST00000222254	NM_005027.3	564	Aag/Gag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18974420	18974420	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs189120195		P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	121	345	0	ENST00000262803.5:c.2774C>T	p.Pro925Leu	p.P925L	ENST00000262803	NM_002911.3	925	cCg/cTg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	122	484	2	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383692	42383692	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202097187		P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	197	560	1	ENST00000221972.3:c.467C>T	p.Ala156Val	p.A156V	ENST00000221972	NM_021601.3	156	gCg/gTg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	627	838	1	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
RRAS	6237	MSKCC	GRCh37	19	50139958	50139958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	325	696	1	ENST00000246792.3:c.371C>T	p.Thr124Met	p.T124M	ENST00000246792	NM_006270.3	124	aCg/aTg																																																																															
ALK	238	MSKCC	GRCh37	2	29456453	29456453	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	204	590	2	ENST00000389048.3:c.2465del	p.Gly822ValfsTer9	p.G822Vfs*9	ENST00000389048	NM_004304.4	822	gGt/gt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61713075	61713075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	45	321	0	ENST00000401558.2:c.2336del	p.Pro779LeufsTer28	p.P779Lfs*28	ENST00000401558	NM_003400.3	779	cCt/ct																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046944	128046946	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	143	525	9	ENST00000285398.2:c.789_791del	p.Glu264del	p.E264del	ENST00000285398	NM_000122.1	263	gaAGAg/gag																																																																															
ACVR1	90	MSKCC	GRCh37	2	158622622	158622622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	94	449	1	ENST00000263640.3:c.877G>A	p.Asp293Asn	p.D293N	ENST00000263640	NM_001105.4	293	Gac/Aac																																																																															
CASP8	841	MSKCC	GRCh37	2	202150030	202150030	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	189	531	1	ENST00000358485.4:c.1471C>T	p.Arg491Ter	p.R491*	ENST00000358485	NM_001080125.1	491	Cga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212495230	212495230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	32	477	0	ENST00000342788.4:c.2036G>A	p.Ser679Asn	p.S679N	ENST00000342788	NM_005235.2	679	aGc/aAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212587117	212587117	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	45	342	0	ENST00000342788.4:c.883+1G>A		p.X295_splice	ENST00000342788	NM_005235.2	295																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	28	244	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31386391	31386391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	179	529	0	ENST00000328111.2:c.1616G>A	p.Arg539Gln	p.R539Q	ENST00000328111	NM_006892.3	539	cGg/cAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733321	40733321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	94	454	1	ENST00000373198.4:c.3485C>T	p.Ala1162Val	p.A1162V	ENST00000373198	NM_133170.3	1162	gCg/gTg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130441	29130441	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	157	545	0	ENST00000328354.6:c.269del	p.Pro90LeufsTer20	p.P90Lfs*20	ENST00000328354	NM_007194.3	90	cCt/ct																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161819	47161819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	134	378	0	ENST00000409792.3:c.4307C>T	p.Thr1436Ile	p.T1436I	ENST00000409792	NM_014159.6	1436	aCa/aTa																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936552	49936552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	225	625	0	ENST00000296474.3:c.1375G>A	p.Val459Ile	p.V459I	ENST00000296474	NM_002447.2	459	Gtc/Atc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440297	52440297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	218	536	0	ENST00000460680.1:c.755G>A	p.Arg252His	p.R252H	ENST00000460680	NM_004656.3	252	cGt/cAt																																																																															
ATR	545	MSKCC	GRCh37	3	142178198	142178198	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778835776		P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	92	340	0	ENST00000350721.4:c.7220G>A	p.Arg2407His	p.R2407H	ENST00000350721	NM_001184.3	2407	cGc/cAc																																																																															
KIT	3815	MSKCC	GRCh37	4	55564507	55564507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	128	408	0	ENST00000288135.5:c.395C>T	p.Thr132Met	p.T132M	ENST00000288135	NM_000222.2	132	aCg/aTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55968579	55968579	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	156	580	0	ENST00000263923.4:c.2084del	p.Pro695LeufsTer14	p.P695Lfs*14	ENST00000263923	NM_002253.2	695	cCt/ct																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217127	66217127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	65	434	0	ENST00000273854.3:c.2488G>A	p.Glu830Lys	p.E830K	ENST00000273854	NM_004439.5	830	Gag/Aag																																																																															
RAD50	10111	MSKCC	GRCh37	5	131977992	131977992	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	100	476	1	ENST00000265335.6:c.3875A>G	p.Asn1292Ser	p.N1292S	ENST00000265335		1292	aAc/aGc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176709530	176709530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	75	367	1	ENST00000439151.2:c.5957G>A	p.Arg1986His	p.R1986H	ENST00000439151	NM_022455.4	1986	cGc/cAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180040015	180040015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	192	703	0	ENST00000261937.6:c.3427G>A	p.Ala1143Thr	p.A1143T	ENST00000261937	NM_182925.4	1143	Gcc/Acc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94067986	94067986	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150543233		P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	81	245	0	ENST00000369303.4:c.976G>A	p.Val326Ile	p.V326I	ENST00000369303	NM_004440.3	326	Gtt/Att																																																																															
SESN1	27244	MSKCC	GRCh37	6	109319849	109319849	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	172	455	0	ENST00000436639.2:c.839T>G	p.Ile280Ser	p.I280S	ENST00000436639	NM_014454.2	280	aTc/aGc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946143	13946143	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	328	473	0	ENST00000405192.2:c.953del	p.Leu318TrpfsTer2	p.L318Wfs*2	ENST00000405192	NM_001163147.1	318	tTg/tg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367244	50367244	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	69	248	0	ENST00000331340.3:c.56del	p.Pro19LeufsTer2	p.P19Lfs*2	ENST00000331340	NM_006060.4	17	agC/ag																																																																															
HGF	3082	MSKCC	GRCh37	7	81340804	81340804	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	30	281	0	ENST00000222390.5:c.1437T>A	p.Asn479Lys	p.N479K	ENST00000222390	NM_000601.4	479	aaT/aaA																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508133	106508133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	47	189	0	ENST00000359195.3:c.127G>A	p.Val43Met	p.V43M	ENST00000359195	NM_002649.2	43	Gtg/Atg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508932	106508932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	188	338	0	ENST00000359195.3:c.926C>T	p.Thr309Met	p.T309M	ENST00000359195	NM_002649.2	309	aCg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879229	151879229	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	225	527	1	ENST00000262189.6:c.5716C>T	p.Arg1906Ter	p.R1906*	ENST00000262189	NM_170606.2	1906	Cga/Tga																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	60	340	2	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006054	22006054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	223	532	1	ENST00000276925.6:c.349G>A	p.Val117Met	p.V117M	ENST00000276925	NM_004936.3	117	Gtg/Atg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249884	110249884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1434085608		P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	159	549	2	ENST00000374672.4:c.791C>T	p.Ala264Val	p.A264V	ENST00000374672	NM_004235.4	264	gCg/gTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405177	139405177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	207	699	0	ENST00000277541.6:c.2668G>A	p.Gly890Ser	p.G890S	ENST00000277541	NM_017617.3	890	Ggc/Agc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139418336	139418336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	237	769	1	ENST00000277541.6:c.236G>A	p.Arg79His	p.R79H	ENST00000277541	NM_017617.3	79	cGc/cAc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44923043	44923046	+	frameshift_variant	Frame_Shift_Del	DEL	AACT	AACT	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	215	239	0	ENST00000377967.4:c.1905_1908del	p.Gln635HisfsTer55	p.Q635Hfs*55	ENST00000377967	NM_021140.2	635	cAACTa/ca																																																																															
MSH3	4437	MSKCC	GRCh37	5	80149980	80149980	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	38	402	0	ENST00000265081.6:c.2845C>T	p.Gln949Ter	p.Q949*	ENST00000265081	NM_002439.4	949	Cag/Tag																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0031856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	175	447	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0031856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	65	289	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
AR	367	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	277	219	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149457764	149457764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	273	472	1	ENST00000286301.3:c.640C>T	p.Arg214Trp	p.R214W	ENST00000286301	NM_005211.3	214	Cgg/Tgg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	97	482	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93955016	93955016	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0031856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	10	238	0	ENST00000369303.4:c.2882A>C	p.Glu961Ala	p.E961A	ENST00000369303	NM_004440.3	961	gAg/gCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579364	7579364	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	294	634	0	ENST00000269305.4:c.323delG	p.Gly108ValfsTer15	p.G108Vfs*15	ENST00000269305	NM_001126112.2	108	gGt/gt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89725057	89725074	+	stop_gained,protein_altering_variant	Nonsense_Mutation	DEL	TCACAAAAACAGTAGAGG	TCACAAAAACAGTAGAGG	GCT			P-0031907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	27	141	0	ENST00000371953.3:c.1040_1057delinsGCT	p.Phe347_Glu353delinsCysTer	p.F347_E353delinsC*	ENST00000371953	NM_000314.4	347	tTCACAAAAACAGTAGAGGag/tGCTag																																																																															
B2M	567	MSKCC	GRCh37	15	45007704	45008034	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CATCCATCCGACATTGAAGTTGACTTACTGAAGAATGGAGAGAGAATTGAAAAAGTGGAGCATTCAGACTTGTCTTTCAGCAAGGACTGGTCTTTCTATCTCTTGTACTACACTGAATTCACCCCCACTGAAAAAGATGAGTATGCCTGCCGTGTGAACCATGTGACTTTGTCACAGCCCAAGATAGTTAAGTGGGGTAAGTCTTACATTCTTTTGTAAGCTGCTGAAAGTTGTGTATGAGTAGTCATATCATAAAGCTGCTTTGATATAAAAAAGGTCTATGGCCATACTACCCTGAATGAGTCCCATCCCATCTGATATAAACAATCTG	CATCCATCCGACATTGAAGTTGACTTACTGAAGAATGGAGAGAGAATTGAAAAAGTGGAGCATTCAGACTTGTCTTTCAGCAAGGACTGGTCTTTCTATCTCTTGTACTACACTGAATTCACCCCCACTGAAAAAGATGAGTATGCCTGCCGTGTGAACCATGTGACTTTGTCACAGCCCAAGATAGTTAAGTGGGGTAAGTCTTACATTCTTTTGTAAGCTGCTGAAAGTTGTGTATGAGTAGTCATATCATAAAGCTGCTTTGATATAAAAAAGGTCTATGGCCATACTACCCTGAATGAGTCCCATCCCATCTGATATAAACAATCTG	-			P-0031907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	89	332	0	ENST00000558401.1:c.154_346+138del		p.X52_splice	ENST00000558401	NM_004048.2	52																																																																																
INPP4A	3631	MSKCC	GRCh37	2	99185081	99185090	+	frameshift_variant	Frame_Shift_Del	DEL	TGCGGTTAAA	TGCGGTTAAA	AGT			P-0031907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	65	381	1	ENST00000074304.5:c.2483_2492delinsAGT	p.Val828GlufsTer77	p.V828Efs*77	ENST00000074304	NM_001134224.1	828	gTGCGGTTAAAt/gAGTt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874558	35874558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	125	459	0	ENST00000303115.3:c.714G>A	p.Met238Ile	p.M238I	ENST00000303115	NM_002185.3	238	atG/atA																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552901	106552901	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	256	596	0	ENST00000369096.4:c.866C>A	p.Pro289His	p.P289H	ENST00000369096	NM_001198.3	289	cCc/cAc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228339	53228339	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0031907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	194	462	0	ENST00000375401.3:c.2063G>A	p.Gly688Asp	p.G688D	ENST00000375401	NM_004187.3	688	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0031914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	215	623	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533942	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0031914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	118	387	0	ENST00000307078.5:c.1212_1215del	p.Glu405AlafsTer52	p.E405Afs*52	ENST00000307078	NM_004655.3	404	agAGAG/ag																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146647	185146647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	119	440	0	ENST00000265026.3:c.278C>T	p.Ser93Leu	p.S93L	ENST00000265026	NM_004721.4	93	tCa/tTa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591925	48591925	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	85	433	0	ENST00000342988.3:c.1088G>C	p.Cys363Ser	p.C363S	ENST00000342988	NM_005359.5	363	tGt/tCt																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839699	27839699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	112	340	0	ENST00000328488.2:c.395G>A	p.Arg132Gln	p.R132Q	ENST00000328488	NM_003533.2	132	cGa/cAa																																																																															
RET	5979	MSKCC	GRCh37	10	43615160	43615160	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1154	110	779	0	ENST00000355710.3:c.2574C>G	p.Ile858Met	p.I858M	ENST00000355710	NM_020975.4	858	atC/atG																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134468	2134468	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	240	750	0	ENST00000219476.3:c.4245G>C	p.Lys1415Asn	p.K1415N	ENST00000219476	NM_000548.3	1415	aaG/aaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398255	25398255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	201	644	0	ENST00000256078.4:c.64C>A	p.Gln22Lys	p.Q22K	ENST00000256078	NM_033360.2	22	Cag/Aag																																																																															
JUN	3725	MSKCC	GRCh37	1	59248189	59248189	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	22	50	0	ENST00000371222.2:c.554G>A	p.Gly185Asp	p.G185D	ENST00000371222	NM_002228.3	185	gGc/gAc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028668	12028674	+	frameshift_variant	Frame_Shift_Del	DEL	TGGAGTT	TGGAGTT	-			P-0031920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	175	561	0	ENST00000353533.5:c.874_880del	p.Ser292GlyfsTer24	p.S292Gfs*24	ENST00000353533	NM_003010.3	291	TGGAGTTtg/tg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292463	15292463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	90	843	3	ENST00000263388.2:c.2716G>A	p.Ala906Thr	p.A906T	ENST00000263388	NM_000435.2	906	Gcc/Acc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972723	25972723	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	161	458	0	ENST00000435504.4:c.1702A>G	p.Arg568Gly	p.R568G	ENST00000435504		568	Agg/Ggg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0031922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	103	432	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0031922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	109	414	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155721	56155722	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0031922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	64	281	0	ENST00000399503.3:c.816_817del	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	271	agAAaa/agaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183204	56183204	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0031922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	78	284	0	ENST00000399503.3:c.4115-1G>C		p.X1372_splice	ENST00000399503	NM_005921.1	1372																																																																																
EPHA7	2045	MSKCC	GRCh37	6	94068094	94068094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	35	243	0	ENST00000369303.4:c.868G>A	p.Asp290Asn	p.D290N	ENST00000369303	NM_004440.3	290	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0031683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	233	473	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
PGR	5241	MSKCC	GRCh37	11	100998784	100998784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	207	590	1	ENST00000325455.5:c.1018G>A	p.Ala340Thr	p.A340T	ENST00000325455	NM_001202474.3	340	Gcc/Acc																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182041	38182041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	236	437	0	ENST00000396334.3:c.665G>A	p.Ser222Asn	p.S222N	ENST00000396334	NM_002468.4	222	aGt/aAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151875090	151875090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	39	95	0	ENST00000262189.6:c.7448del	p.Gly2483AspfsTer32	p.G2483Dfs*32	ENST00000262189	NM_170606.2	2483	gGa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0031688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	35	527	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971154	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0031688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	37	384	1	ENST00000304494.5:c.204_205delinsTT	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	68	gcGGag/gcTTag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098684	178098808	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTTTCCTTAAACCTGCCATAACTTTCCCAAGAACTGAGTACTCTGTACCTGGGAGTAGTTGGCAGATCCACTGGTTTCTGACTGGATGTGCTGGGCTGGCTGAATTGGGAGAAATTCACCTGTC	TGTTTCCTTAAACCTGCCATAACTTTCCCAAGAACTGAGTACTCTGTACCTGGGAGTAGTTGGCAGATCCACTGGTTTCTGACTGGATGTGCTGGGCTGGCTGAATTGGGAGAAATTCACCTGTC	-			P-0031688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	25	207	0	ENST00000397062.3:c.237_312+49del		p.X79_splice	ENST00000397062	NM_006164.4	79																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0031695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	221	414	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0031695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	25	409	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																															
MGA	23269	MSKCC	GRCh37	15	41988856	41988856	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	41	559	0	ENST00000219905.7:c.1648C>T	p.Gln550Ter	p.Q550*	ENST00000219905	NM_001164273.1	550	Cag/Tag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298695	15298695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	366	570	1	ENST00000263388.2:c.1603G>A	p.Glu535Lys	p.E535K	ENST00000263388	NM_000435.2	535	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057835	27057835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	64	670	0	ENST00000324856.7:c.1543C>T	p.Gln515Ter	p.Q515*	ENST00000324856	NM_006015.4	515	Cag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117443	115117443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	162	367	0	ENST00000257566.3:c.731C>T	p.Ser244Phe	p.S244F	ENST00000257566	NM_016569.3	244	tCc/tTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107156	27107156	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	245	507	0	ENST00000324856.7:c.6767C>A	p.Ser2256Ter	p.S2256*	ENST00000324856	NM_006015.4	2256	tCa/tAa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112197	115112204	+	frameshift_variant	Frame_Shift_Del	DEL	CGTTGAAG	CGTTGAAG	-			P-0031695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	249	432	0	ENST00000257566.3:c.1536_1543del	p.Phe512LeufsTer177	p.F512Lfs*177	ENST00000257566	NM_016569.3	512	ttCTTCAACGgg/ttgg																																																																															
CDH1	999	MSKCC	GRCh37	16	68856029	68856030	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACATCATTGATGCAGACCTTCCTCCCAAT			P-0031695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	182	569	0	ENST00000261769.5:c.1843_1871dup	p.Pro625LeufsTer16	p.P625Lfs*16	ENST00000261769	NM_004360.3	613	aac/aACATCATTGATGCAGACCTTCCTCCCAATac																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22160300	22160300	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	144	327	0	ENST00000215832.6:c.331G>C	p.Asp111His	p.D111H	ENST00000215832	NM_002745.4	111	Gat/Cat																																																																															
KDR	3791	MSKCC	GRCh37	4	55973955	55973955	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	37	535	0	ENST00000263923.4:c.1361A>T	p.His454Leu	p.H454L	ENST00000263923	NM_002253.2	454	cAt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	71	469	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578189	7578189	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0031827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	21	579	0	ENST00000269305.4:c.660T>G	p.Tyr220Ter	p.Y220*	ENST00000269305	NM_001126112.2	220	taT/taG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0031831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	49	517	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0031831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	41	692	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040624	47040624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	87	369	0	ENST00000329236.7:c.1025G>A	p.Gly342Asp	p.G342D	ENST00000329236	NM_001204466.1	342	gGt/gAt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577232	64577242	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTCACGGCT	AGCTCACGGCT	-			P-0031836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	364	616	0	ENST00000337652.1:c.340_350del	p.Ser114GlyfsTer67	p.S114Gfs*67	ENST00000337652	NM_130803.2	114	AGCCGTGAGCTg/g																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120442	70120442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1297	115	840	1	ENST00000245479.2:c.1444G>A	p.Asp482Asn	p.D482N	ENST00000245479	NM_000346.3	482	Gac/Aac																																																																															
ATRX	546	MSKCC	GRCh37	X	76778788	76778788	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	294	588	0	ENST00000373344.5:c.6791A>C	p.Glu2264Ala	p.E2264A	ENST00000373344	NM_000489.3	2264	gAa/gCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	156	541	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	107	575	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363231	40363231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	95	497	0	ENST00000397332.2:c.998C>T	p.Ala333Val	p.A333V	ENST00000397332	NM_001033082.2	333	gCg/gTg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245465	41245465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	224	746	0	ENST00000357654.3:c.2083G>A	p.Asp695Asn	p.D695N	ENST00000357654	NM_007294.3	695	Gat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	213	493	0	ENST00000263967.3:c.3012G>T	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atT																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061261	38061261	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	332	582	1	ENST00000250448.2:c.728A>G	p.Tyr243Cys	p.Y243C	ENST00000250448	NM_004496.3	243	tAc/tGc																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50479316	50479316	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	106	436	0	ENST00000394963.4:c.164G>C	p.Gly55Ala	p.G55A	ENST00000394963	NM_003076.4	55	gGa/gCa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109742	115109745	+	frameshift_variant	Frame_Shift_Del	DEL	CGCG	CGCG	-			P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	277	731	0	ENST00000257566.3:c.2133_2136del	p.Cys711TrpfsTer177	p.C711Wfs*177	ENST00000257566	NM_016569.3	711	tgCGCG/tg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28636021	28636021	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	58	594	0	ENST00000241453.7:c.351T>G	p.His117Gln	p.H117Q	ENST00000241453	NM_004119.2	117	caT/caG																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953901	32953901	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	34	391	0	ENST00000380152.3:c.8968T>C	p.Trp2990Arg	p.W2990R	ENST00000380152		2990	Tgg/Cgg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252942	36252942	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	148	397	0	ENST00000300305.3:c.420C>G	p.Tyr140Ter	p.Y140*	ENST00000300305		140	taC/taG																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859502	151859503	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	84	448	0	ENST00000262189.6:c.11159_11160del	p.Leu3720ArgfsTer4	p.L3720Rfs*4	ENST00000262189	NM_170606.2	3720	cTG/c																																																																															
FANCC	2176	MSKCC	GRCh37	9	98002975	98002975	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	27	507	0	ENST00000289081.3:c.301G>C	p.Glu101Gln	p.E101Q	ENST00000289081	NM_000136.2	101	Gaa/Caa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0031841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	176	432	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41219645	41219645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	31	479	0	ENST00000357654.3:c.5054C>T	p.Thr1685Ile	p.T1685I	ENST00000357654	NM_007294.3	1685	aCt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0031842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	639	732	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0031842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	425	461	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0031842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	316	734	1	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
AR	367	MSKCC	GRCh37	X	66765159	66765197	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	-			P-0031842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	78	231	0	ENST00000374690.3:c.201_239del	p.Gln68_Gln80del	p.Q68_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188853	32188853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs192478549		P-0031842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	273	700	1	ENST00000375023.3:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000375023	NM_004557.3	234	cGg/cAg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746114	162746114	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	129	311	0	ENST00000367921.3:c.2237G>T	p.Arg746Leu	p.R746L	ENST00000367921	NM_006182.2	746	cGg/cTg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89156933	89156933	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	180	519	1	ENST00000336596.2:c.35G>T	p.Ser12Ile	p.S12I	ENST00000336596	NM_005233.5	12	aGc/aTc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149499078	149499078	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	294	694	0	ENST00000261799.4:c.2750T>G	p.Ile917Ser	p.I917S	ENST00000261799	NM_002609.3	917	aTc/aGc																																																																															
IRF4	3662	MSKCC	GRCh37	6	393310	393310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	233	512	0	ENST00000380956.4:c.158C>A	p.Pro53His	p.P53H	ENST00000380956	NM_001195286.1	53	cCc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0031843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	12	537	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	22	475	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0031873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	16	393	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0031873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	11	177	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560476	95560476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	11	369	0	ENST00000343455.3:c.5113G>A	p.Glu1705Lys	p.E1705K	ENST00000343455	NM_177438.2	1705	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0031881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	446	680	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0031881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	92	619	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0031881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	192	1158	2	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945775	38945775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	44	386	0	ENST00000357387.3:c.4451G>A	p.Arg1484Gln	p.R1484Q	ENST00000357387	NM_152756.3	1484	cGa/cAa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412122	63412122	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	133	617	1	ENST00000330258.3:c.1045C>T	p.Gln349Ter	p.Q349*	ENST00000330258	NM_152424.3	349	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0031882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	136	489	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0031882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	216	778	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56176917	56176918	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	38	408	0	ENST00000399503.3:c.2189dup	p.Ile731TyrfsTer5	p.I731Yfs*5	ENST00000399503	NM_005921.1	729	-/G																																																																															
SPEN	23013	MSKCC	GRCh37	1	16263871	16263871	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	113	950	0	ENST00000375759.3:c.10240G>C	p.Glu3414Gln	p.E3414Q	ENST00000375759	NM_015001.2	3414	Gag/Cag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16263891	16263891	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	120	1005	0	ENST00000375759.3:c.10260G>C	p.Gln3420His	p.Q3420H	ENST00000375759	NM_015001.2	3420	caG/caC																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720663	89720664	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0031882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	94	340	0	ENST00000371953.3:c.815_816del	p.His272LeufsTer25	p.H272Lfs*25	ENST00000371953	NM_000314.4	272	CAc/c																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575081	48575081	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	58	445	0	ENST00000342988.3:c.275A>T	p.His92Leu	p.H92L	ENST00000342988	NM_005359.5	92	cAt/cTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878863	151878864	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0031882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	56	689	0	ENST00000262189.6:c.6081_6082del	p.Arg2028ThrfsTer9	p.R2028Tfs*9	ENST00000262189	NM_170606.2	2027	gcACga/gcga																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127916216	127916216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	67	651	0	ENST00000373547.4:c.428C>T	p.Thr143Ile	p.T143I	ENST00000373547	NM_002721.4	143	aCc/aTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	44	621	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0031884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	49	883	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552822		P-0031884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	57	653	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492906	56492919	+	frameshift_variant	Frame_Shift_Del	DEL	GGCAGCCAGCTGCA	GGCAGCCAGCTGCA	-			P-0031884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	18	353	0	ENST00000407977.2:c.20_33del	p.Leu7ProfsTer28	p.L7Pfs*28	ENST00000407977		7	cTGCAGCTGGCTGCC/c																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145589	11145589	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	377	553	0	ENST00000344626.4:c.3952-1G>T		p.X1318_splice	ENST00000344626	NM_003072.3	1318																																																																																
ARID2	196528	MSKCC	GRCh37	12	46245288	46245288	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	404	479	0	ENST00000334344.6:c.3382C>T	p.Gln1128Ter	p.Q1128*	ENST00000334344	NM_152641.2	1128	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221339	1221339	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	434	536	0	ENST00000326873.7:c.862G>T	p.Gly288Trp	p.G288W	ENST00000326873	NM_000455.4	288	Ggg/Tgg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149439329	149439329	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	528	648	1	ENST00000286301.3:c.2066C>A	p.Pro689His	p.P689H	ENST00000286301	NM_005211.3	689	cCc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108099978	108099978	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	544	426	1	ENST00000278616.4:c.259C>T	p.Gln87Ter	p.Q87*	ENST00000278616	NM_000051.3	87	Caa/Taa																																																																															
MGA	23269	MSKCC	GRCh37	15	42041485	42041485	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	245	577	0	ENST00000219905.7:c.5680G>T	p.Val1894Leu	p.V1894L	ENST00000219905	NM_001164273.1	1894	Gtg/Ttg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14014111	14014111	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	278	578	0	ENST00000311895.7:c.89A>G	p.Asp30Gly	p.D30G	ENST00000311895	NM_005236.2	30	gAc/gGc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50828303	50828303	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	171	439	0	ENST00000398568.2:c.2641G>T	p.Ala881Ser	p.A881S	ENST00000398568	NM_001042412.1	881	Gcc/Tcc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993768	72993768	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	184	526	0	ENST00000268489.5:c.277A>T	p.Thr93Ser	p.T93S	ENST00000268489	NM_006885.3	93	Acc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579312	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CG	CG	GA			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	641	537	0	ENST00000269305.4:c.374_375delinsTC	p.Thr125Ile	p.T125I	ENST00000269305	NM_001126112.2	125	aCG/aTC																																																																															
NF1	4763	MSKCC	GRCh37	17	29657372	29657372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	270	590	1	ENST00000358273.4:c.5668G>T	p.Gly1890Cys	p.G1890C	ENST00000358273	NM_001042492.2	1890	Ggc/Tgc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619289	37619289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	170	455	1	ENST00000447079.4:c.965G>T	p.Arg322Leu	p.R322L	ENST00000447079	NM_015083.1	322	cGa/cTa																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740612	58740612	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	553	600	1	ENST00000305921.3:c.1517C>G	p.Thr506Ser	p.T506S	ENST00000305921	NM_003620.3	506	aCt/aGt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59853812	59853812	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	211	591	0	ENST00000259008.2:c.2047G>C	p.Val683Leu	p.V683L	ENST00000259008	NM_032043.2	683	Gtg/Ctg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120256	70120256	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	316	768	1	ENST00000245479.2:c.1258T>A	p.Tyr420Asn	p.Y420N	ENST00000245479	NM_000346.3	420	Tac/Aac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597372	10597372	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	539	775	0	ENST00000171111.5:c.1831G>T	p.Glu611Ter	p.E611*	ENST00000171111	NM_203500.1	611	Gag/Tag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662006	227662006	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	178	663	0	ENST00000305123.5:c.1449C>A	p.Tyr483Ter	p.Y483*	ENST00000305123	NM_005544.2	483	taC/taA																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944595	40944595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	163	422	0	ENST00000373198.4:c.1907C>T	p.Ser636Leu	p.S636L	ENST00000373198	NM_133170.3	636	tCa/tTa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155203	55155203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	199	569	0	ENST00000257290.5:c.2802C>A	p.Asn934Lys	p.N934K	ENST00000257290	NM_006206.4	934	aaC/aaA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197724	66197724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	281	559	0	ENST00000273854.3:c.2975G>T	p.Ser992Ile	p.S992I	ENST00000273854	NM_004439.5	992	aGt/aTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187560928	187560928	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	167	417	1	ENST00000441802.2:c.3590C>G	p.Thr1197Arg	p.T1197R	ENST00000441802	NM_005245.3	1197	aCa/aGa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117650514	117650514	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	575	699	0	ENST00000368508.3:c.5344A>T	p.Thr1782Ser	p.T1782S	ENST00000368508	NM_002944.2	1782	Aca/Tca																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527760	157527760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	202	485	0	ENST00000346085.5:c.5485C>T	p.His1829Tyr	p.H1829Y	ENST00000346085	NM_020732.3	1829	Cac/Tac																																																																															
ETV1	2115	MSKCC	GRCh37	7	14027793	14027793	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	145	308	0	ENST00000405192.2:c.51G>C	p.Gln17His	p.Q17H	ENST00000405192	NM_001163147.1	17	caG/caC																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974702	21974702	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	184	407	0	ENST00000304494.5:c.125A>C	p.Asn42Thr	p.N42T	ENST00000304494	NM_000077.4	42	aAt/aCt																																																																															
BTK	695	MSKCC	GRCh37	X	100626670	100626670	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	334	263	0	ENST00000308731.7:c.260G>T	p.Ser87Ile	p.S87I	ENST00000308731	NM_000061.2	87	aGt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578440	7578440	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs879254249		P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	212	792	0	ENST00000269305.4:c.490A>G	p.Lys164Glu	p.K164E	ENST00000269305	NM_001126112.2	164	Aag/Gag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117658356	117658356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	197	1044	0	ENST00000368508.3:c.5227C>T	p.Pro1743Ser	p.P1743S	ENST00000368508	NM_002944.2	1743	Cca/Tca																																																																															
RB1	5925	MSKCC	GRCh37	13	48941629	48941629	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	87	305	0	ENST00000267163.4:c.940-1G>T		p.X314_splice	ENST00000267163	NM_000321.2	314																																																																																
PIK3CD	5293	MSKCC	GRCh37	1	9783188	9783188	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	138	530	0	ENST00000377346.4:c.2436del	p.Tyr813MetfsTer47	p.Y813Mfs*47	ENST00000377346	NM_005026.3	811	aCc/ac																																																																															
MTOR	2475	MSKCC	GRCh37	1	11298648	11298648	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	94	745	0	ENST00000361445.4:c.1813del	p.His605ThrfsTer7	p.H605Tfs*7	ENST00000361445	NM_004958.3	605	Cac/ac																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257102	16257102	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	240	825	1	ENST00000375759.3:c.4367C>A	p.Ser1456Ter	p.S1456*	ENST00000375759	NM_015001.2	1456	tCa/tAa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120913	115120913	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	112	660	0	ENST00000257566.3:c.93C>G	p.Ser31Arg	p.S31R	ENST00000257566	NM_016569.3	31	agC/agG																																																																															
POLE	5426	MSKCC	GRCh37	12	133202352	133202352	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	158	646	0	ENST00000320574.5:c.6536G>T	p.Gly2179Val	p.G2179V	ENST00000320574	NM_006231.2	2179	gGg/gTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562368	95562368	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368343829		P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	171	481	0	ENST00000343455.3:c.4889G>A	p.Arg1630His	p.R1630H	ENST00000343455	NM_177438.2	1630	cGc/cAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968212	134968212	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	165	734	0	ENST00000398015.3:c.2725G>C	p.Asp909His	p.D909H	ENST00000398015	NM_004441.4	909	Gac/Cac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332504	153332504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	107	536	0	ENST00000281708.4:c.452A>G	p.Asp151Gly	p.D151G	ENST00000281708	NM_033632.3	151	gAc/gGc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570383	87570383	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	219	890	0	ENST00000277120.3:c.2123T>A	p.Ile708Asn	p.I708N	ENST00000277120		708	aTc/aAc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321399	1321399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	196	826	1	ENST00000381566.1:c.356C>A	p.Pro119His	p.P119H	ENST00000381566		119	cCc/cAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933254	39933254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	273	494	0	ENST00000378444.4:c.1345G>T	p.Asp449Tyr	p.D449Y	ENST00000378444	NM_001123385.1	449	Gat/Tat																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0031684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	191	450	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0031684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	106	504	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	94	583	0	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	121	374	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	64	459	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141499	11141499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	81	546	0	ENST00000344626.4:c.3476G>A	p.Gly1159Glu	p.G1159E	ENST00000344626	NM_003072.3	1159	gGg/gAg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600480	10600480	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	81	600	1	ENST00000171111.5:c.1375C>T	p.Arg459Ter	p.R459*	ENST00000171111	NM_203500.1	459	Cga/Tga																																																																															
SDHC	6391	MSKCC	GRCh37	1	161298244	161298248	+	missense_variant	Missense_Mutation	ONP	ATAGG	ATAGG	TTAGT			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	51	426	1	ENST00000367975.2:c.136_140delinsTTAGT	p.Ile46_Gly47delinsLeuVal	p.I46_G47delinsLV	ENST00000367975	NM_003001.3	46	ATAGGt/TTAGTt																																																																															
SDHD	6392	MSKCC	GRCh37	11	111965528	111965528	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	38	264	0	ENST00000375549.3:c.315-1G>T		p.X105_splice	ENST00000375549	NM_003002.3	105																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212426716	212426716	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	78	533	0	ENST00000342788.4:c.2399C>A	p.Pro800His	p.P800H	ENST00000342788	NM_005235.2	800	cCc/cAc																																																																															
KDR	3791	MSKCC	GRCh37	4	55948199	55948199	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	56	462	0	ENST00000263923.4:c.3772A>G	p.Thr1258Ala	p.T1258A	ENST00000263923	NM_002253.2	1258	Acg/Gcg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143130152	143130152	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	54	481	0	ENST00000262992.4:c.864G>C	p.Glu288Asp	p.E288D	ENST00000262992	NM_001101669.1	288	gaG/gaC																																																																															
APC	324	MSKCC	GRCh37	5	112174970	112174972	+	missense_variant	Missense_Mutation	ONP	AGG	AGG	TGT			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	48	310	0	ENST00000257430.4:c.3679_3681delinsTGT	p.Arg1227Cys	p.R1227C	ENST00000257430	NM_000038.5	1227	AGG/TGT																																																																															
RAD50	10111	MSKCC	GRCh37	5	131930679	131930745	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTGAAAGTGATTTAGACAGGCTTAAAGAGGAAATTGAAAAATCATCAAAACAGCGAGGTAAGTTGT	TTTGAAAGTGATTTAGACAGGCTTAAAGAGGAAATTGAAAAATCATCAAAACAGCGAGGTAAGTTGT	GA			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	33	507	2	ENST00000265335.6:c.1912_1969+9delinsGA		p.X638_splice	ENST00000265335		638																																																																																
MDC1	9656	MSKCC	GRCh37	6	30676075	30676075	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	44	453	0	ENST00000376406.3:c.2281G>T	p.Glu761Ter	p.E761*	ENST00000376406	NM_014641.2	761	Gag/Tag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2966387	2966387	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	117	533	0	ENST00000396946.4:c.1793C>A	p.Ala598Asp	p.A598D	ENST00000396946	NM_032415.4	598	gCc/gAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974776	21974794	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCAGCCAGTCAGCCGAA	GGCCAGCCAGTCAGCCGAA	-			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	26	177	0	ENST00000304494.5:c.33_51del	p.Ser12ArgfsTer8	p.S12Rfs*8	ENST00000304494	NM_000077.4	11	ccTTCGGCTGACTGGCTGGCC/cc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570347	87570347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	71	588	0	ENST00000277120.3:c.2087G>T	p.Arg696Met	p.R696M	ENST00000277120		696	aGg/aTg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131930678	131930742	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTGAAAGTGATTTAGACAGGCTTAAAGAGGAAATTGAAAAATCATCAAAACAGCGAGGTAAGT	TTTTGAAAGTGATTTAGACAGGCTTAAAGAGGAAATTGAAAAATCATCAAAACAGCGAGGTAAGT	-			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	32	498	0	ENST00000265335.6:c.1912_1969+7del		p.X638_splice	ENST00000265335		638																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0031694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	147	534	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs764146326		P-0031694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	175	700	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																																																															
TET1	80312	MSKCC	GRCh37	10	70406103	70406104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0031694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	134	645	0	ENST00000373644.4:c.3618_3619insGT	p.Pro1207ValfsTer37	p.P1207Vfs*37	ENST00000373644	NM_030625.2	1206	ttt/ttTGt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857260	9857260	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	67	593	0	ENST00000330684.3:c.4141A>G	p.Arg1381Gly	p.R1381G	ENST00000330684	NM_001134407.1	1381	Aga/Gga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717771	89717771	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	43	419	0	ENST00000371953.3:c.796A>T	p.Lys266Ter	p.K266*	ENST00000371953	NM_000314.4	266	Aaa/Taa																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154404	2154404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	48	750	0	ENST00000434045.2:c.524G>T	p.Trp175Leu	p.W175L	ENST00000434045	NM_001127598.1	175	tGg/tTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120836	115120837	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	30	540	0	ENST00000257566.3:c.169_170delinsAT	p.Pro57Met	p.P57M	ENST00000257566	NM_016569.3	57	CCg/ATg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	34	645	0	ENST00000269305.4:c.773A>C	p.Glu258Ala	p.E258A	ENST00000269305	NM_001126112.2	258	gAa/gCa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265328	46265328	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	40	409	0	ENST00000371998.3:c.2198A>T	p.Glu733Val	p.E733V	ENST00000371998		733	gAg/gTg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940391	49940391	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	50	779	0	ENST00000296474.3:c.652A>G	p.Ile218Val	p.I218V	ENST00000296474	NM_002447.2	218	Atc/Gtc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391052	89391052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	53	651	0	ENST00000336596.2:c.1118G>A	p.Cys373Tyr	p.C373Y	ENST00000336596	NM_005233.5	373	tGt/tAt																																																																															
TP63	8626	MSKCC	GRCh37	3	189585692	189585692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	57	546	0	ENST00000264731.3:c.953G>A	p.Arg318His	p.R318H	ENST00000264731	NM_003722.4	318	cGc/cAc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1952847	1952847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	58	688	2	ENST00000382891.5:c.1930G>T	p.Ala644Ser	p.A644S	ENST00000382891	NM_133335.3	644	Gca/Tca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249022	55249022	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	103	607	0	ENST00000275493.2:c.2320G>T	p.Val774Leu	p.V774L	ENST00000275493	NM_005228.3	774	Gtg/Ttg																																																																															
HGF	3082	MSKCC	GRCh37	7	81359042	81359042	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	45	510	0	ENST00000222390.5:c.919C>T	p.Gln307Ter	p.Q307*	ENST00000222390	NM_000601.4	307	Caa/Taa																																																																															
MET	4233	MSKCC	GRCh37	7	116339605	116339605	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	36	461	0	ENST00000397752.3:c.467C>G	p.Ser156Trp	p.S156W	ENST00000397752	NM_000245.2	156	tCg/tGg																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345912	152345912	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	49	610	0	ENST00000359321.1:c.658del	p.Asp220ThrfsTer2	p.D220Tfs*2	ENST00000359321	NM_005431.1	220	Gac/ac																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87636241	87636241	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	34	593	0	ENST00000277120.3:c.2406G>T	p.Met802Ile	p.M802I	ENST00000277120		802	atG/atT																																																																															
MED12	9968	MSKCC	GRCh37	X	70348490	70348490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	30	286	1	ENST00000374080.3:c.3397G>T	p.Ala1133Ser	p.A1133S	ENST00000374080		1133	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	177	584	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs483352697		P-0031708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	10	568	0	ENST00000269305.4:c.587G>A	p.Arg196Gln	p.R196Q	ENST00000269305	NM_001126112.2	196	cGa/cAa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111511	8111512	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	204	499	0	ENST00000346208.3:c.997_998insC	p.Asn333ThrfsTer19	p.N333Tfs*19	ENST00000346208		333	aat/aCat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0031710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	93	714	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27059246	27059246	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	86	576	0	ENST00000324856.7:c.1883T>C	p.Met628Thr	p.M628T	ENST00000324856	NM_006015.4	628	aTg/aCg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27059259	27059265	+	frameshift_variant	Frame_Shift_Del	DEL	TCAGTCA	TCAGTCA	-			P-0031710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	74	553	0	ENST00000324856.7:c.1896_1902del	p.Gln633AspfsTer12	p.Q633Dfs*12	ENST00000324856	NM_006015.4	632	ctTCAGTCA/ct																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259204	89259204	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	17	502	0	ENST00000336596.2:c.348C>A	p.Cys116Ter	p.C116*	ENST00000336596	NM_005233.5	116	tgC/tgA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624268	89624268	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	160	370	0	ENST00000371953.3:c.42G>C	p.Arg14Ser	p.R14S	ENST00000371953	NM_000314.4	14	agG/agC																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279895	18279895	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0031712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	243	507	0	ENST00000222254.8:c.1980-2A>G		p.X660_splice	ENST00000222254	NM_005027.3	660																																																																																
BAP1	8314	MSKCC	GRCh37	3	52442618	52442618	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	138	365	0	ENST00000460680.1:c.127G>C	p.Val43Leu	p.V43L	ENST00000460680	NM_004656.3	43	Gta/Cta																																																																															
MED12	9968	MSKCC	GRCh37	X	70339267	70339267	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	309	339	1	ENST00000374080.3:c.144G>T	p.Gln48His	p.Q48H	ENST00000374080		48	caG/caT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	107	618	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221227	1221227	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	364	855	0	ENST00000326873.7:c.752del	p.Gly251ValfsTer36	p.G251Vfs*36	ENST00000326873	NM_000455.4	250	acG/ac																																																																															
DIS3	22894	MSKCC	GRCh37	13	73336123	73336125	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0031735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	25	386	0	ENST00000377767.4:c.2278_2280del	p.Asn760del	p.N760del	ENST00000377767	NM_014953.3	760	AAT/-																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163638	32163638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	75	511	0	ENST00000375023.3:c.5588C>A	p.Thr1863Lys	p.T1863K	ENST00000375023	NM_004557.3	1863	aCg/aAg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53244006	53244006	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	152	384	0	ENST00000375401.3:c.987del	p.Met329IlefsTer101	p.M329Ifs*101	ENST00000375401	NM_004187.3	329	atG/at																																																																															
MAX	4149	MSKCC	GRCh37	14	65544682	65544682	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	147	816	0	ENST00000358664.4:c.244C>T	p.Gln82Ter	p.Q82*	ENST00000358664	NM_002382.4	82	Cag/Tag																																																																															
MET	4233	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	T			P-0031737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	122	693	0	ENST00000397752.3:c.3028+3A>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
PRKD1	5587	MSKCC	GRCh37	14	30069007	30069007	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	105	583	0	ENST00000331968.5:c.1922G>C	p.Gly641Ala	p.G641A	ENST00000331968	NM_002742.2	641	gGt/gCt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185184662	185184670	+	inframe_deletion	In_Frame_Del	DEL	CCCTGTTCG	CCCTGTTCG	-			P-0031737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	96	615	0	ENST00000265026.3:c.1554_1562del	p.Val520_Pro522del	p.V520_P522del	ENST00000265026	NM_004721.4	518	caCCCTGTTCGt/cat																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64288362	64288363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	64	321	0	ENST00000370651.3:c.127dup	p.Thr43AsnfsTer8	p.T43Nfs*8	ENST00000370651	NM_003463.4	42	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0031738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	182	641	4	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0031738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	484	703	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	143	616	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678508	88678508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	39	563	1	ENST00000360948.2:c.1028G>T	p.Arg343Leu	p.R343L	ENST00000360948	NM_001012338.2	343	cGg/cTg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94201031	94201031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	41	477	0	ENST00000323929.3:c.1046G>A	p.Arg349Gln	p.R349Q	ENST00000323929	NM_005591.3	349	cGg/cAg																																																																															
ATM	472	MSKCC	GRCh37	11	108206638	108206638	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	70	571	0	ENST00000278616.4:c.8218C>T	p.Gln2740Ter	p.Q2740*	ENST00000278616	NM_000051.3	2740	Cag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108206604	108206605	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	TT			P-0031739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	73	585	0	ENST00000278616.4:c.8184_8185delinsTT	p.Met2728_Gln2729delinsIleTer	p.M2728_Q2729delinsI*	ENST00000278616	NM_000051.3	2728	atGCaa/atTTaa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022450	12022450	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	68	864	0	ENST00000396373.4:c.556A>G	p.Ile186Val	p.I186V	ENST00000396373	NM_001987.4	186	Atc/Gtc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28623657	28623657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	72	615	0	ENST00000241453.7:c.900G>A	p.Met300Ile	p.M300I	ENST00000241453	NM_004119.2	300	atG/atA																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981917	70981917	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	99	776	0	ENST00000276594.2:c.179C>A	p.Ala60Glu	p.A60E	ENST00000276594	NM_024504.3	60	gCg/gAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8523525	8523525	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0031739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	25	425	0	ENST00000356435.5:c.680-1G>T		p.X227_splice	ENST00000356435		227																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0031740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	511	676	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504401	8504401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757922864		P-0031740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	44	591	0	ENST00000356435.5:c.1682G>A	p.Arg561Gln	p.R561Q	ENST00000356435		561	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	209	599	1	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																																																															
CUL3	8452	MSKCC	GRCh37	2	225342967	225342967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	146	607	0	ENST00000264414.4:c.2125C>T	p.Arg709Trp	p.R709W	ENST00000264414	NM_003590.4	709	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0031748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	154	609	0	ENST00000304494.5:c.457+1G>T		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10610127	10610127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	176	682	0	ENST00000171111.5:c.583G>T	p.Gly195Cys	p.G195C	ENST00000171111	NM_203500.1	195	Ggc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	73	400	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0031777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	136	511	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173345	112173345	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	36	225	0	ENST00000257430.4:c.2054G>A	p.Trp685Ter	p.W685*	ENST00000257430	NM_000038.5	685	tGg/tAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0031777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	49	268	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	49	186	0	ENST00000257430.4:c.4473dupT	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																															
E2F3	1871	MSKCC	GRCh37	6	20486948	20486948	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	58	288	0	ENST00000346618.3:c.913C>T	p.Arg305Ter	p.R305*	ENST00000346618	NM_001949.4	305	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212236	36212236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	84	578	1	ENST00000222270.7:c.1987G>A	p.Glu663Lys	p.E663K	ENST00000222270	NM_014727.1	663	Gaa/Aaa																																																																															
MED12	9968	MSKCC	GRCh37	X	70341422	70341422	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	166	412	0	ENST00000374080.3:c.857A>C	p.Glu286Ala	p.E286A	ENST00000374080		286	gAa/gCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004530-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			612	48	460	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11199365	11199365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004530-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			662	53	494	0	ENST00000361445.4:c.5126G>T	p.Arg1709Leu	p.R1709L	ENST00000361445	NM_004958.3	1709	cGc/cTc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987076	36987076	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004530-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			844	79	557	0	ENST00000354822.5:c.613G>T	p.Glu205Ter	p.E205*	ENST00000354822	NM_001079668.2	205	Gag/Tag																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988386	36988386	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004530-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			300	16	202	0	ENST00000354822.5:c.267del	p.His90ThrfsTer11	p.H90Tfs*11	ENST00000354822	NM_001079668.2	89	ggG/gg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44919278	44919310	+	inframe_deletion	In_Frame_Del	DEL	TAACCTTCCACAAGGTAGTCTACAGAATAAAAC	TAACCTTCCACAAGGTAGTCTACAGAATAAAAC	-			P-0004530-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			267	30	218	0	ENST00000377967.4:c.1209_1241del	p.Asn403_Thr413del	p.N403_T413del	ENST00000377967	NM_021140.2	402	tgTAACCTTCCACAAGGTAGTCTACAGAATAAAACt/tgt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			332	101	322	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			286	221	651	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857047	9857047	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs568622613		P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			250	108	315	0	ENST00000330684.3:c.4354C>T	p.Arg1452Cys	p.R1452C	ENST00000330684	NM_001134407.1	1452	Cgc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242474	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGA	GAATTAAGA	-			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			553	424	523	0	ENST00000275493.2:c.2239_2247delTTAAGAGAA	p.Leu747_Glu749del	p.L747_E749del	ENST00000275493	NM_005228.3	746	GAATTAAGA/-																																																																															
ATRX	546	MSKCC	GRCh37	X	76937230	76937230	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	115	610	0	ENST00000373344.5:c.3518C>A	p.Ser1173Ter	p.S1173*	ENST00000373344	NM_000489.3	1173	tCa/tAa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41219669	41219669	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			642	103	490	0	ENST00000357654.3:c.5030C>G	p.Thr1677Ser	p.T1677S	ENST00000357654	NM_007294.3	1677	aCt/aGt																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66519044	66519044	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			404	177	449	0	ENST00000358598.2:c.325G>T	p.Asp109Tyr	p.D109Y	ENST00000358598	NM_212471.2	109	Gat/Tat																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222925	36222925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			330	250	835	0	ENST00000222270.7:c.5554G>T	p.Ala1852Ser	p.A1852S	ENST00000222270	NM_014727.1	1852	Gcc/Tcc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61708324	61708324	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	178	367	0	ENST00000401558.2:c.3065T>A	p.Ile1022Lys	p.I1022K	ENST00000401558	NM_003400.3	1022	aTa/aAa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546878	9546878	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	185	421	1	ENST00000353224.5:c.1144T>A	p.Leu382Met	p.L382M	ENST00000353224	NM_177990.2	382	Ttg/Atg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730835	40730835	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			288	342	694	0	ENST00000373198.4:c.3700G>C	p.Asp1234His	p.D1234H	ENST00000373198	NM_133170.3	1234	Gac/Cac																																																																															
MLH1	4292	MSKCC	GRCh37	3	37035145	37035145	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			247	66	347	0	ENST00000231790.2:c.107T>C	p.Ile36Thr	p.I36T	ENST00000231790	NM_000249.3	36	aTt/aCt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048144	180048144	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	90	658	0	ENST00000261937.6:c.2129T>G	p.Val710Gly	p.V710G	ENST00000261937	NM_182925.4	710	gTg/gGg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413027	63413027	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			585	146	828	0	ENST00000330258.3:c.140C>A	p.Ser47Tyr	p.S47Y	ENST00000330258	NM_152424.3	47	tCc/tAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76937137	76937137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	96	545	0	ENST00000373344.5:c.3611C>T	p.Ser1204Phe	p.S1204F	ENST00000373344	NM_000489.3	1204	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	29	354	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0031595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	79	349	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579584	7579585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	29	475	0	ENST00000269305.4:c.102dupC	p.Pro36AlafsTer7	p.P36Afs*7	ENST00000269305	NM_001126112.2	34	-/C																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880997	37880998	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TCT			P-0031598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	67	483	0	ENST00000269571.5:c.2326_2327insTCT	p.Gly776delinsValCys	p.G776delinsVC	ENST00000269571		776	ggt/gTCTgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	50	432	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NUF2	83540	MSKCC	GRCh37	1	163318848	163318848	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	31	479	0	ENST00000271452.3:c.1238A>C	p.Glu413Ala	p.E413A	ENST00000271452	NM_145697.2	413	gAa/gCa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95597917	95597917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	37	400	0	ENST00000343455.3:c.367G>A	p.Glu123Lys	p.E123K	ENST00000343455	NM_177438.2	123	Gaa/Aaa																																																																															
TERT	7015	MSKCC	GRCh37	5	1293990	1293990	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	57	853	0	ENST00000310581.5:c.1011C>A	p.Asp337Glu	p.D337E	ENST00000310581	NM_198253.2	337	gaC/gaA																																																																															
BRAF	673	MSKCC	GRCh37	7	140453153	140453153	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	8	307	0	ENST00000288602.6:c.1782T>A	p.Asp594Glu	p.D594E	ENST00000288602	NM_004333.4	594	gaT/gaA																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115809	8115809	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	213	504	0	ENST00000346208.3:c.1158del	p.Lys387ArgfsTer17	p.K387Rfs*17	ENST00000346208		385	ttC/tt																																																																															
ACVR1	90	MSKCC	GRCh37	2	158637053	158637053	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112489929		P-0031606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	125	508	0	ENST00000263640.3:c.127G>A	p.Gly43Ser	p.G43S	ENST00000263640	NM_001105.4	43	Ggt/Agt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056334	27056334	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	71	298	0	ENST00000324856.7:c.1331del	p.Gly444AlafsTer175	p.G444Afs*175	ENST00000324856	NM_006015.4	444	Ggc/gc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106640	27106651	+	inframe_deletion	In_Frame_Del	DEL	TCCTGGACGGAC	TCCTGGACGGAC	-			P-0031606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	207	512	0	ENST00000324856.7:c.6255_6266del	p.Asp2086_Leu2089del	p.D2086_L2089del	ENST00000324856	NM_006015.4	2084	gTCCTGGACGGACtc/gtc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111517	8111518	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACCCTGTCTGCAATGCCTGTGGGCTCTACTACAAGCTTCACAATGT			P-0031606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	128	475	0	ENST00000346208.3:c.1005_1047+3dup		p.D335fs	ENST00000346208		335	gac/gACCCTGTCTGCAATGCCTGTGGGCTCTACTACAAGCTTCACAATGTac																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020958	26020958	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs746056479		P-0031606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	91	384	0	ENST00000357647.3:c.241A>G	p.Thr81Ala	p.T81A	ENST00000357647	NM_003529.2	81	Aca/Gca																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137527288	137527288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	142	532	0	ENST00000367739.4:c.358G>T	p.Ala120Ser	p.A120S	ENST00000367739	NM_000416.2	120	Gct/Tct																																																																															
MPL	4352	MSKCC	GRCh37	1	43803818	43803818	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147938568		P-0031607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	343	516	0	ENST00000372470.3:c.128G>A	p.Arg43Gln	p.R43Q	ENST00000372470	NM_005373.2	43	cGa/cAa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	30946592	30946594	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs752094508		P-0031607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	76	195	0	ENST00000375687.4:c.25_27del	p.Lys9del	p.K9del	ENST00000375687	NM_015338.5	5	cAGAag/cag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640578	3640578	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138344471		P-0031607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	211	616	0	ENST00000294008.3:c.3061C>T	p.Arg1021Cys	p.R1021C	ENST00000294008	NM_032444.2	1021	Cgc/Tgc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111521	8111545	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTCTGCAATGCCTGTGGGCTCTA	CTGTCTGCAATGCCTGTGGGCTCTA	-			P-0031607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	71	565	0	ENST00000346208.3:c.1009_1033del	p.Val337ThrfsTer10	p.V337Tfs*10	ENST00000346208		336	cCTGTCTGCAATGCCTGTGGGCTCTAc/cc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99459184	99459194	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTCTCCAGTT	CCTCTCCAGTT	-			P-0031607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	140	466	0	ENST00000268035.6:c.1829-6_1833del		p.X610_splice	ENST00000268035	NM_000875.3	610																																																																																
PALB2	79728	MSKCC	GRCh37	16	23647395	23647402	+	frameshift_variant	Frame_Shift_Del	DEL	GTGAAATA	GTGAAATA	CTG			P-0031607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	136	479	1	ENST00000261584.4:c.465_472delinsCAG	p.Ile156ArgfsTer10	p.I156Rfs*10	ENST00000261584	NM_024675.3	155	ttTATTTCACag/ttCAGag																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31379438	31379438	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	132	413	0	ENST00000328111.2:c.845T>G	p.Leu282Arg	p.L282R	ENST00000328111	NM_006892.3	282	cTg/cGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0031628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	136	391	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
BTK	695	MSKCC	GRCh37	X	100609636	100609636	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	48	435	0	ENST00000308731.7:c.1613C>G	p.Ser538Cys	p.S538C	ENST00000308731	NM_000061.2	538	tCt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0031699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	163	334	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0031699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	49	314	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0031699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	43	344	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175573	112175573	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	195	256	0	ENST00000257430.4:c.4283del	p.Gly1428AspfsTer45	p.G1428Dfs*45	ENST00000257430	NM_000038.5	1428	Gga/ga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912131	114912131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	31	389	0	ENST00000543371.1:c.1201G>A	p.Glu401Lys	p.E401K	ENST00000543371	NM_001198531.1	401	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100496	8100496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	102	504	1	ENST00000346208.3:c.470C>T	p.Pro157Leu	p.P157L	ENST00000346208		157	cCg/cTg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532438	63532438	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0031699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	140	461	0	ENST00000307078.5:c.2141G>A	p.Arg714Gln	p.R714Q	ENST00000307078	NM_004655.3	714	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928060	178928086	+	inframe_deletion	In_Frame_Del	DEL	GCCAGTACCTCATGGATTAGAAGATTT	GCCAGTACCTCATGGATTAGAAGATTT	-			P-0031718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	74	351	0	ENST00000263967.3:c.1340_1366del	p.Pro447_Leu455del	p.P447_L455del	ENST00000263967	NM_006218.2	446	tgGCCAGTACCTCATGGATTAGAAGATTTg/tgg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56176917	56176918	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	82	196	0	ENST00000399503.3:c.2189dup	p.Ile731TyrfsTer5	p.I731Yfs*5	ENST00000399503	NM_005921.1	729	-/G																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177727	56177739	+	frameshift_variant	Frame_Shift_Del	DEL	TTCCCCTGAGTGC	TTCCCCTGAGTGC	-			P-0031718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	107	486	0	ENST00000399503.3:c.2700_2712del	p.Ser900ArgfsTer5	p.S900Rfs*5	ENST00000399503	NM_005921.1	900	agTTCCCCTGAGTGC/ag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0031720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	90	660	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578262	7578318	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGGATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGC	CGGATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGC	-			P-0031720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	140	854	0	ENST00000269305.4:c.560-29_587del		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
BAP1	8314	MSKCC	GRCh37	3	52441430	52441430	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	202	729	0	ENST00000460680.1:c.422A>C	p.His141Pro	p.H141P	ENST00000460680	NM_004656.3	141	cAt/cCt																																																																															
ATR	545	MSKCC	GRCh37	3	142281475	142281476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	93	903	0	ENST00000350721.4:c.768dup	p.Gln257SerfsTer11	p.Q257Sfs*11	ENST00000350721	NM_001184.3	256	-/T																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	388	789	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38279390	38279390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	223	837	2	ENST00000425967.3:c.1099G>A	p.Ala367Thr	p.A367T	ENST00000425967	NM_001174067.1	367	Gca/Aca																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099982	157099993	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGC	GGCGGCGGCGGC	-			P-0031724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	66	100	0	ENST00000346085.5:c.933_944del	p.Gly316_Gly319del	p.G316_G319del	ENST00000346085	NM_020732.3	307	GGCGGCGGCGGC/-																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0031726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	213	814	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	62	982	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18466950	18466950	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	32	468	0	ENST00000266497.5:c.1089G>C	p.Gln363His	p.Q363H	ENST00000266497		363	caG/caC																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792835	33792835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	13	226	0	ENST00000498907.2:c.486G>T	p.Gln162His	p.Q162H	ENST00000498907	NM_004364.3	162	caG/caT																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855583	45855583	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0031726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	55	797	0	ENST00000391945.4:c.2074A>T	p.Lys692Ter	p.K692*	ENST00000391945	NM_000400.3	692	Aag/Tag																																																																															
KIT	3815	MSKCC	GRCh37	4	55524225	55524225	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	70	659	0	ENST00000288135.5:c.44T>A	p.Leu15His	p.L15H	ENST00000288135	NM_000222.2	15	cTc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55225394	55225394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	217	707	0	ENST00000275493.2:c.1246G>A	p.Asp416Asn	p.D416N	ENST00000275493	NM_005228.3	416	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0031727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	57	596	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
MET	4233	MSKCC	GRCh37	7	116417463	116417463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	11	494	0	ENST00000397752.3:c.3280C>T	p.His1094Tyr	p.H1094Y	ENST00000397752	NM_000245.2	1094	Cat/Tat																																																																															
CCND2	894	MSKCC	GRCh37	12	4388020	4388020	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	89	567	0	ENST00000261254.3:c.506A>T	p.Gln169Leu	p.Q169L	ENST00000261254	NM_001759.3	169	cAg/cTg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78897399	78897399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	85	733	1	ENST00000306801.3:c.2734G>T	p.Ala912Ser	p.A912S	ENST00000306801	NM_020761.2	912	Gct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	111	274	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782177		P-0026120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	165	406	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88690576	88690576	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	80	284	0	ENST00000360948.2:c.454C>A	p.Leu152Ile	p.L152I	ENST00000360948	NM_001012338.2	152	Ctt/Att																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7983164	7983164	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	114	303	0	ENST00000319144.4:c.850C>G	p.Pro284Ala	p.P284A	ENST00000319144	NM_001139.2	284	Cca/Gca																																																																															
NF1	4763	MSKCC	GRCh37	17	29528456	29528456	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	23	256	0	ENST00000358273.4:c.1213A>G	p.Thr405Ala	p.T405A	ENST00000358273	NM_001042492.2	405	Aca/Gca																																																																															
MALT1	10892	MSKCC	GRCh37	18	56348415	56348415	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	31	118	0	ENST00000348428.3:c.223G>T	p.Glu75Ter	p.E75*	ENST00000348428	NM_006785.3	75	Gag/Tag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213513	36213513	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	115	470	0	ENST00000222270.7:c.2615G>T	p.Cys872Phe	p.C872F	ENST00000222270	NM_014727.1	872	tGc/tTc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279758	46279758	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	206	282	0	ENST00000371998.3:c.3684A>T	p.Gln1228His	p.Q1228H	ENST00000371998		1228	caA/caT																																																																															
FYN	2534	MSKCC	GRCh37	6	111983112	111983112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	27	215	0	ENST00000368678.4:c.1435G>T	p.Gly479Cys	p.G479C	ENST00000368678		479	Ggc/Tgc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426520	47426521	+	missense_variant	Missense_Mutation	DNP	AG	AG	TA			P-0026120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	48	335	0	ENST00000377045.4:c.863_864delinsTA	p.Lys288Ile	p.K288I	ENST00000377045	NM_001654.4	288	aAG/aTA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	190	378	0	ENST00000269305.4:c.809T>G	p.Phe270Cys	p.F270C	ENST00000269305	NM_001126112.2	270	tTt/tGt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716229	52716229	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	99	300	0	ENST00000322088.6:c.673G>T	p.Val225Leu	p.V225L	ENST00000322088	NM_014225.5	225	Gtg/Ttg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967174	25967174	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	50	180	2	ENST00000435504.4:c.2032G>T	p.Ala678Ser	p.A678S	ENST00000435504		678	Gcc/Tcc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542228	187542229	+	stop_gained	Nonsense_Mutation	DNP	CA	CA	AT			P-0026121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	36	250	0	ENST00000441802.2:c.5511_5512delinsAT	p.Tyr1837_Glu1838delinsTer	p.Y1837_E1838delins*	ENST00000441802	NM_005245.3	1837	taTGaa/taATaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	215	285	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0026124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	399	409	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	376	210	1	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																															
RARA	5914	MSKCC	GRCh37	17	38508234	38508234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	140	273	0	ENST00000254066.5:c.542C>T	p.Thr181Met	p.T181M	ENST00000254066	NM_000964.3	181	aCg/aTg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982087	93982087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	120	227	2	ENST00000369303.4:c.1378G>A	p.Glu460Lys	p.E460K	ENST00000369303	NM_004440.3	460	Gag/Aag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119762	70119763	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0026124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	364	352	3	ENST00000245479.2:c.767_768dupGG	p.Arg257GlyfsTer23	p.R257Gfs*23	ENST00000245479	NM_000346.3	255	gag/gaGGg																																																																															
APC	324	MSKCC	GRCh37	5	112174411	112174411	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	127	138	0	ENST00000257430.4:c.3120G>T	p.Arg1040Ser	p.R1040S	ENST00000257430	NM_000038.5	1040	agG/agT																																																																															
APC	324	MSKCC	GRCh37	5	112174551	112174551	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	192	260	1	ENST00000257430.4:c.3260del	p.Leu1087ProfsTer39	p.L1087Pfs*39	ENST00000257430	NM_000038.5	1087	cTc/cc																																																																															
APC	324	MSKCC	GRCh37	5	112175980	112175981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	64	147	1	ENST00000257430.4:c.4691dupT	p.Leu1564PhefsTer3	p.L1564Ffs*3	ENST00000257430	NM_000038.5	1563	-/T																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739803	41739803	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	135	266	0	ENST00000242208.4:c.170C>G	p.Ala57Gly	p.A57G	ENST00000242208	NM_002192.2	57	gCc/gGc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39930216	39930234	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTTACTTACATCTCTCAC	GTTTACTTACATCTCTCAC	-			P-0026124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	189	101	2	ENST00000378444.4:c.3230_3238+10del		p.X1077_splice	ENST00000378444	NM_001123385.1	1077																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	74	486	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
PARK2	5071	MSKCC	GRCh37	6	161781146	161781146	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs531247345		P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	128	602	0	ENST00000366898.1:c.1259G>A	p.Arg420His	p.R420H	ENST00000366898	NM_004562.2	420	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894365		P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	47	507	0	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1142	93	834	1	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	47	505	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120013	70120013	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	32	137	0	ENST00000245479.2:c.1015C>T	p.Gln339Ter	p.Q339*	ENST00000245479	NM_000346.3	339	Cag/Tag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10247947	10247947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	59	533	0	ENST00000340748.4:c.4255G>A	p.Ala1419Thr	p.A1419T	ENST00000340748		1419	Gca/Aca																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372092	55372093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	99	433	0	ENST00000297316.4:c.788dup	p.Glu264GlyfsTer101	p.E264Gfs*101	ENST00000297316	NM_022454.3	261	ggc/ggCc																																																																															
POLE	5426	MSKCC	GRCh37	12	133237692	133237692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	146	624	2	ENST00000320574.5:c.2923C>T	p.Arg975Cys	p.R975C	ENST00000320574	NM_006231.2	975	Cgc/Tgc																																																																															
SDHA	6389	MSKCC	GRCh37	5	235390	235390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	147	622	0	ENST00000264932.6:c.1196C>T	p.Pro399Leu	p.P399L	ENST00000264932	NM_004168.2	399	cCg/cTg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32814930	32814930	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1458831913		P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	73	719	1	ENST00000354258.4:c.2135C>T	p.Ala712Val	p.A712V	ENST00000354258	NM_000593.5	712	gCg/gTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713727	30713727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	99	452	0	ENST00000359013.4:c.1127G>A	p.Gly376Asp	p.G376D	ENST00000359013	NM_001024847.2	376	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427983	49427983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	132	663	0	ENST00000301067.7:c.10607G>A	p.Arg3536His	p.R3536H	ENST00000301067	NM_003482.3	3536	cGc/cAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68972955	68972955	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141759315		P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	121	521	1	ENST00000288368.4:c.1280G>A	p.Arg427Lys	p.R427K	ENST00000288368	NM_024870.2	427	aGg/aAg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180045854	180045854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	142	616	0	ENST00000261937.6:c.2917C>T	p.Arg973Trp	p.R973W	ENST00000261937	NM_182925.4	973	Cgg/Tgg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515612	31515613	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	42	490	0	ENST00000344624.3:c.1006dup	p.Glu336GlyfsTer4	p.E336Gfs*4	ENST00000344624		336	gag/gGag																																																																															
ARAF	369	MSKCC	GRCh37	X	47426444	47426444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	174	398	0	ENST00000377045.4:c.787G>A	p.Val263Met	p.V263M	ENST00000377045	NM_001654.4	263	Gtg/Atg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216188	36216188	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	154	672	0	ENST00000222270.7:c.3596G>C	p.Gly1199Ala	p.G1199A	ENST00000222270	NM_014727.1	1199	gGc/gCc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023715	27023716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	81	392	0	ENST00000324856.7:c.827dup	p.Gly277ArgfsTer123	p.G277Rfs*123	ENST00000324856	NM_006015.4	274	atg/atGg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466284	120466284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	80	455	0	ENST00000256646.2:c.4835G>A	p.Gly1612Asp	p.G1612D	ENST00000256646	NM_024408.3	1612	gGt/gAt																																																																															
FH	2271	MSKCC	GRCh37	1	241667470	241667470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	50	341	0	ENST00000366560.3:c.980C>A	p.Ala327Asp	p.A327D	ENST00000366560	NM_000143.3	327	gCc/gAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948713	71948713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	146	713	0	ENST00000298229.2:c.3425G>A	p.Arg1142His	p.R1142H	ENST00000298229	NM_001567.3	1142	cGc/cAc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94204804	94204804	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	32	518	0	ENST00000323929.3:c.781T>G	p.Phe261Val	p.F261V	ENST00000323929	NM_005591.3	261	Ttt/Gtt																																																																															
SDHD	6392	MSKCC	GRCh37	11	111959690	111959690	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200255724		P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	89	355	2	ENST00000375549.3:c.269C>T	p.Ala90Val	p.A90V	ENST00000375549	NM_003002.3	90	gCg/gTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641538	18641538	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	45	447	0	ENST00000266497.5:c.2537A>C	p.Lys846Thr	p.K846T	ENST00000266497		846	aAg/aCg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121437409	121437409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	166	703	1	ENST00000257555.6:c.1747C>T	p.Arg583Trp	p.R583W	ENST00000257555		583	Cgg/Tgg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781225	3781225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	196	827	0	ENST00000262367.5:c.5140G>A	p.Val1714Met	p.V1714M	ENST00000262367	NM_004380.2	1714	Gtg/Atg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943819	9943819	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	89	382	0	ENST00000330684.3:c.1123-1G>A		p.X375_splice	ENST00000330684	NM_001134407.1	375																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72984594	72984594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	200	703	2	ENST00000268489.5:c.2990C>T	p.Ala997Val	p.A997V	ENST00000268489	NM_006885.3	997	gCc/gTc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40456448	40456448	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	58	778	1	ENST00000345506.4:c.1257+1G>A		p.X419_splice	ENST00000345506	NM_003152.3	419																																																																																
MSI2	124540	MSKCC	GRCh37	17	55693419	55693419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	145	673	1	ENST00000284073.2:c.626C>T	p.Ala209Val	p.A209V	ENST00000284073	NM_138962.2	209	gCg/gTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581303	48581303	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs199809905		P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	136	516	0	ENST00000342988.3:c.607C>A	p.Pro203Thr	p.P203T	ENST00000342988	NM_005359.5	203	Cca/Aca																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217051	2217051	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	170	756	0	ENST00000398665.3:c.2509del	p.Ala837ProfsTer14	p.A837Pfs*14	ENST00000398665	NM_032482.2	836	Ggg/gg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953881	17953881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	86	739	1	ENST00000458235.1:c.521C>T	p.Ala174Val	p.A174V	ENST00000458235	NM_000215.3	174	gCg/gTg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965946	18965946	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	145	700	0	ENST00000262803.5:c.1439A>C	p.Lys480Thr	p.K480T	ENST00000262803	NM_002911.3	480	aAg/aCg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256638	19256638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	73	600	1	ENST00000162023.5:c.1075C>T	p.Arg359Trp	p.R359W	ENST00000162023		359	Cgg/Tgg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753594	42753594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	172	791	0	ENST00000222329.4:c.670C>T	p.Arg224Cys	p.R224C	ENST00000222329	NM_006494.2	224	Cgc/Tgc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025775	48025776	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	32	260	0	ENST00000234420.5:c.655_656del	p.Ser219Ter	p.S219*	ENST00000234420	NM_000179.2	218	aAG/a																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22153344	22153344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	75	473	0	ENST00000215832.6:c.566C>T	p.Ala189Val	p.A189V	ENST00000215832	NM_002745.4	189	gCc/gTc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12653516	12653516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	142	592	0	ENST00000251849.4:c.253G>T	p.Ala85Ser	p.A85S	ENST00000251849	NM_002880.3	85	Gca/Tca																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441235	52441235	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs910211860		P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	101	522	0	ENST00000460680.1:c.535C>T	p.Arg179Trp	p.R179W	ENST00000460680	NM_004656.3	179	Cgg/Tgg																																																																															
ATR	545	MSKCC	GRCh37	3	142268325	142268325	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	14	352	0	ENST00000350721.4:c.3167T>C	p.Leu1056Pro	p.L1056P	ENST00000350721	NM_001184.3	1056	cTg/cCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917494	178917494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	29	339	0	ENST00000263967.3:c.369G>A	p.Met123Ile	p.M123I	ENST00000263967	NM_006218.2	123	atG/atA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361127	66361127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	43	368	0	ENST00000273854.3:c.1045C>T	p.Pro349Ser	p.P349S	ENST00000273854	NM_004439.5	349	Cca/Tca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542567	187542567	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	76	573	0	ENST00000441802.2:c.5173C>A	p.Leu1725Met	p.L1725M	ENST00000441802	NM_005245.3	1725	Ctg/Atg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38968099	38968099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	45	500	0	ENST00000357387.3:c.1006C>T	p.Arg336Cys	p.R336C	ENST00000357387	NM_152756.3	336	Cgt/Tgt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671772	30671772	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	81	695	0	ENST00000376406.3:c.5188C>A	p.Pro1730Thr	p.P1730T	ENST00000376406	NM_014641.2	1730	Cct/Act																																																																															
STK19	8859	MSKCC	GRCh37	6	31948260	31948260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	333	710	0	ENST00000375331.2:c.836G>A	p.Arg279Gln	p.R279Q	ENST00000375331	NM_004197.1	279	cGa/cAa																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815347	32815347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	341	775	2	ENST00000354258.4:c.2026G>A	p.Ala676Thr	p.A676T	ENST00000354258	NM_000593.5	676	Gca/Aca																																																																															
PRDM1	639	MSKCC	GRCh37	6	106554937	106554937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	137	526	0	ENST00000369096.4:c.2054G>A	p.Arg685Gln	p.R685Q	ENST00000369096	NM_001198.3	685	cGg/cAg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196092	138196092	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200740561		P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	186	366	0	ENST00000237289.4:c.406C>T	p.Arg136Cys	p.R136C	ENST00000237289	NM_001270507.1	136	Cgc/Tgc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129240	152129240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	88	733	1	ENST00000206249.3:c.193G>A	p.Ala65Thr	p.A65T	ENST00000206249	NM_000125.3	65	Gcg/Acg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141557661	141557661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	195	844	0	ENST00000220592.5:c.1654G>A	p.Val552Met	p.V552M	ENST00000220592	NM_012154.3	552	Gtg/Atg																																																																															
ABL1	25	MSKCC	GRCh37	9	133748291	133748291	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	123	610	0	ENST00000318560.5:c.952A>G	p.Met318Val	p.M318V	ENST00000318560	NM_005157.4	318	Atg/Gtg																																																																															
ABL1	25	MSKCC	GRCh37	9	133756021	133756021	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	145	557	0	ENST00000318560.5:c.1648A>G	p.Met550Val	p.M550V	ENST00000318560	NM_005157.4	550	Atg/Gtg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139403498	139403498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	184	769	1	ENST00000277541.6:c.2995G>A	p.Val999Met	p.V999M	ENST00000277541	NM_017617.3	999	Gtg/Atg																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841081	15841081	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	80	356	0	ENST00000307771.7:c.1165T>C	p.Tyr389His	p.Y389H	ENST00000307771	NM_005089.3	389	Tac/Cac																																																																															
APC	324	MSKCC	GRCh37	5	112175570	112175571	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	G			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	83	398	0	ENST00000257430.4:c.4279_4280delinsG	p.Pro1427ValfsTer46	p.P1427Vfs*46	ENST00000257430	NM_000038.5	1427	CCt/Gt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0030990-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			109	12	86	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103504570	103504570	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030990-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			463	59	378	0	ENST00000355739.4:c.191A>T	p.Lys64Ile	p.K64I	ENST00000355739	NM_000123.3	64	aAa/aTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0031133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	1404	391	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	392	743	0	ENST00000269305.4:c.398T>A	p.Met133Lys	p.M133K	ENST00000269305	NM_001126112.2	133	aTg/aAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685281	89685281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	97	268	0	ENST00000371953.3:c.176C>G	p.Ser59Ter	p.S59*	ENST00000371953	NM_000314.4	59	tCa/tGa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187947	32187947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	115	622	0	ENST00000375023.3:c.1274C>T	p.Ser425Leu	p.S425L	ENST00000375023	NM_004557.3	425	tCg/tTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032099	10032099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	282	608	0	ENST00000330684.3:c.724G>A	p.Glu242Lys	p.E242K	ENST00000330684	NM_001134407.1	242	Gag/Aag																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029509	14029509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	71	391	0	ENST00000311895.7:c.1720G>A	p.Glu574Lys	p.E574K	ENST00000311895	NM_005236.2	574	Gag/Aag																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30133161	30133161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	75	372	0	ENST00000263025.4:c.337G>A	p.Glu113Lys	p.E113K	ENST00000263025	NM_002746.2	113	Gaa/Aaa																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40447652	40447652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1636	141	458	0	ENST00000345506.4:c.391G>A	p.Gly131Arg	p.G131R	ENST00000345506	NM_003152.3	131	Ggg/Agg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71008424	71008424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	58	282	1	ENST00000318789.4:c.2008G>A	p.Glu670Lys	p.E670K	ENST00000318789	NM_032682.5	670	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921486	178921486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1734	179	514	2	ENST00000263967.3:c.968C>T	p.Ser323Phe	p.S323F	ENST00000263967	NM_006218.2	323	tCt/tTt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149450034	149450034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	149	548	2	ENST00000286301.3:c.1183G>A	p.Glu395Lys	p.E395K	ENST00000286301	NM_005211.3	395	Gag/Aag																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983281	149983281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	248	551	0	ENST00000253339.5:c.2977G>A	p.Glu993Lys	p.E993K	ENST00000253339		993	Gaa/Aaa																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29207435	29207435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	66	438	0	ENST00000240100.2:c.361G>A	p.Asp121Asn	p.D121N	ENST00000240100	NM_001394.6	121	Gac/Aac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0031333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	53	495	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
NF1	4763	MSKCC	GRCh37	17	29497003	29497003	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	56	344	0	ENST00000358273.4:c.574C>T	p.Arg192Ter	p.R192*	ENST00000358273	NM_001042492.2	192	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29546040	29546058	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCGAAACCCAAGGCAGT	GCCCGAAACCCAAGGCAGT	-			P-0031333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	43	507	0	ENST00000358273.4:c.1545_1563del	p.Pro516GlnfsTer4	p.P516Qfs*4	ENST00000358273	NM_001042492.2	515	ggGCCCGAAACCCAAGGCAGT/gg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181834	56181835	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	48	525	0	ENST00000399503.3:c.4059dup	p.Leu1354ThrfsTer9	p.L1354Tfs*9	ENST00000399503	NM_005921.1	1353	tta/ttAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189435	56189461	+	inframe_deletion	In_Frame_Del	DEL	AGAACTTCAACCTCAGGACAGACCTCC	AGAACTTCAACCTCAGGACAGACCTCC	-			P-0031333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	40	554	0	ENST00000399503.3:c.4468_4494del	p.Glu1490_Pro1498del	p.E1490_P1498del	ENST00000399503	NM_005921.1	1489	ttAGAACTTCAACCTCAGGACAGACCTCCa/tta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0031337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	94	611	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	91	575	1	ENST00000326873.7:c.842dup	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggCc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62297356	62297356	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0031337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	51	451	0	ENST00000508582.2:c.611-1G>C		p.X204_splice	ENST00000508582		204																																																																																
EED	8726	MSKCC	GRCh37	11	85975306	85975306	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0031337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	10	345	0	ENST00000263360.6:c.726+1G>C		p.X242_splice	ENST00000263360	NM_003797.3	242																																																																																
NKX2-1	7080	MSKCC	GRCh37	14	36986689	36986690	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	20	13	0	ENST00000354822.5:c.999_1000insT	p.Ile334TyrfsTer105	p.I334Yfs*105	ENST00000354822	NM_001079668.2	333	-/T																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0031340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	77	505	1	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0031552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			402	196	504	0	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
SMYD3	64754	MSKCC	GRCh37	1	246490592	246490592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			676	260	543	0	ENST00000388985.4:c.442G>T	p.Val148Leu	p.V148L	ENST00000388985		148	Gta/Tta																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350354	89350354	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			865	309	662	0	ENST00000301030.4:c.2596A>G	p.Arg866Gly	p.R866G	ENST00000301030	NM_001256183.1	866	Agg/Ggg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37872064	37872064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			833	264	637	1	ENST00000269571.5:c.1385G>T	p.Gly462Val	p.G462V	ENST00000269571		462	gGc/gTc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2223436	2223436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			467	192	455	0	ENST00000398665.3:c.3547C>T	p.Leu1183Phe	p.L1183F	ENST00000398665	NM_032482.2	1183	Ctc/Ttc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212568895	212568895	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			505	138	523	0	ENST00000342788.4:c.1223C>G	p.Pro408Arg	p.P408R	ENST00000342788	NM_005235.2	408	cCa/cGa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288967	212288967	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	201	613	0	ENST00000342788.4:c.2779C>T	p.Arg927Ter	p.R927*	ENST00000342788	NM_005235.2	927	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11177077	11177077	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	193	627	0	ENST00000361445.4:c.7000T>G	p.Leu2334Val	p.L2334V	ENST00000361445	NM_004958.3	2334	Tta/Gta																																																																															
MGA	23269	MSKCC	GRCh37	15	42026718	42026718	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0031556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	36	570	1	ENST00000219905.7:c.3844-2A>G		p.X1282_splice	ENST00000219905	NM_001164273.1	1282																																																																																
DAXX	1616	MSKCC	GRCh37	6	33287175	33287175	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0031556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	33	517	0	ENST00000374542.5:c.1922C>G	p.Ser641Ter	p.S641*	ENST00000374542	NM_001141970.1	641	tCa/tGa																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288563	33288563	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	226	518	0	ENST00000374542.5:c.989T>C	p.Leu330Pro	p.L330P	ENST00000374542	NM_001141970.1	330	cTc/cCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0031557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	134	589	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187535364	187535364	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	246	543	0	ENST00000441802.2:c.9210C>G	p.Phe3070Leu	p.F3070L	ENST00000441802	NM_005245.3	3070	ttC/ttG																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111517	8111518	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACCC			P-0031557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	156	710	0	ENST00000346208.3:c.1004_1007dup	p.Val337ProfsTer16	p.V337Pfs*16	ENST00000346208		335	gac/gACCCac																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAC			P-0031557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	76	402	0	ENST00000346208.3:c.1301_1304dup	p.Ser436ProfsTer72	p.S436Pfs*72	ENST00000346208		433	cac/caCCACc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210503	5210503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	146	761	0	ENST00000357368.4:c.5464G>A	p.Glu1822Lys	p.E1822K	ENST00000357368	NM_002850.3	1822	Gag/Aag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288982	212288982	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	123	745	0	ENST00000342788.4:c.2764G>C	p.Asp922His	p.D922H	ENST00000342788	NM_005235.2	922	Gat/Cat																																																																															
ATR	545	MSKCC	GRCh37	3	142180806	142180806	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	115	486	0	ENST00000350721.4:c.7168C>A	p.Leu2390Met	p.L2390M	ENST00000350721	NM_001184.3	2390	Ctg/Atg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126395	5126396	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0031557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	89	462	0	ENST00000381652.3:c.3240_3241del	p.Glu1080AspfsTer5	p.E1080Dfs*5	ENST00000381652	NM_004972.3	1080	gaACtt/gatt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	132	577	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023008	27023010	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0031558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	14	101	1	ENST00000324856.7:c.126_128delGGC	p.Ala45del	p.A45del	ENST00000324856	NM_006015.4	38	gaGGCg/gag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038831	47038831	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	95	746	0	ENST00000329236.7:c.607G>T	p.Gly203Ter	p.G203*	ENST00000329236	NM_001204466.1	203	Gga/Tga																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460581	149460581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	85	668	0	ENST00000286301.3:c.56G>T	p.Gly19Val	p.G19V	ENST00000286301	NM_005211.3	19	gGa/gTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874674	151874674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	70	516	0	ENST00000262189.6:c.7864C>T	p.His2622Tyr	p.H2622Y	ENST00000262189	NM_170606.2	2622	Cac/Tac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449731	8449731	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	70	594	0	ENST00000356435.5:c.3982del	p.Thr1328HisfsTer22	p.T1328Hfs*22	ENST00000356435		1328	Aca/ca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717704	89717704	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	115	445	1	ENST00000371953.3:c.731delC	p.Pro244LeufsTer12	p.P244Lfs*12	ENST00000371953	NM_000314.4	243	ttC/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	286	683	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0031562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	361	804	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0031562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	207	508	3	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670598	134670598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	241	918	1	ENST00000398015.3:c.509G>A	p.Arg170Gln	p.R170Q	ENST00000398015	NM_004441.4	170	cGg/cAg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45423009	45423009	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	112	470	0	ENST00000262160.6:c.119G>A	p.Trp40Ter	p.W40*	ENST00000262160	NM_005901.5	40	tGg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112175193	112175196	+	frameshift_variant	Frame_Shift_Del	DEL	CCCT	CCCT	-			P-0031562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	26	309	0	ENST00000257430.4:c.3902_3905del	p.Thr1301SerfsTer3	p.T1301Sfs*3	ENST00000257430	NM_000038.5	1301	aCCCTg/ag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934387	39934387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	196	358	0	ENST00000378444.4:c.212G>A	p.Ser71Asn	p.S71N	ENST00000378444	NM_001123385.1	71	aGc/aAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	78	636	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FH	2271	MSKCC	GRCh37	1	241672012	241672012	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	89	622	1	ENST00000366560.3:c.629G>T	p.Gly210Val	p.G210V	ENST00000366560	NM_000143.3	210	gGa/gTa																																																																															
HRAS	3265	MSKCC	GRCh37	11	533785	533785	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	94	784	0	ENST00000311189.7:c.271G>C	p.Glu91Gln	p.E91Q	ENST00000311189		91	Gag/Cag																																																																															
HRAS	3265	MSKCC	GRCh37	11	533885	533885	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	98	799	0	ENST00000311189.7:c.171T>G	p.Asp57Glu	p.D57E	ENST00000311189		57	gaT/gaG																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285865	46285865	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	73	635	0	ENST00000334344.6:c.5133G>C	p.Gln1711His	p.Q1711H	ENST00000334344	NM_152641.2	1711	caG/caC																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426686	121426686	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	104	677	0	ENST00000257555.6:c.377A>G	p.His126Arg	p.H126R	ENST00000257555		126	cAc/cGc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271966	15271966	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	115	746	0	ENST00000263388.2:c.6473T>G	p.Leu2158Arg	p.L2158R	ENST00000263388	NM_000435.2	2158	cTc/cGc																																																																															
INHA	3623	MSKCC	GRCh37	2	220437213	220437213	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	236	911	2	ENST00000243786.2:c.117T>A	p.Asp39Glu	p.D39E	ENST00000243786	NM_002191.3	39	gaT/gaA																																																																															
ATR	545	MSKCC	GRCh37	3	142238614	142238614	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	34	354	0	ENST00000350721.4:c.4279A>G	p.Ile1427Val	p.I1427V	ENST00000350721	NM_001184.3	1427	Att/Gtt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201809	66201809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	62	700	2	ENST00000273854.3:c.2693C>T	p.Pro898Leu	p.P898L	ENST00000273854	NM_004439.5	898	cCa/cTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187522506	187522506	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	103	684	0	ENST00000441802.2:c.11557A>G	p.Met3853Val	p.M3853V	ENST00000441802	NM_005245.3	3853	Atg/Gtg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871233	35871233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	94	556	0	ENST00000303115.3:c.455C>T	p.Thr152Ile	p.T152I	ENST00000303115	NM_002185.3	152	aCa/aTa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467655	50467655	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	69	579	0	ENST00000331340.3:c.890C>A	p.Ala297Asp	p.A297D	ENST00000331340	NM_006060.4	297	gCc/gAc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1331482	1331483	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	85	756	1	ENST00000381566.1:c.45_46delinsTT	p.Gly16Ter	p.G16*	ENST00000381566		15	ctGGga/ctTTga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578376	7578379	+	frameshift_variant	Frame_Shift_Del	DEL	CTAT	CTAT	-			P-0031613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	341	517	1	ENST00000269305.4:c.551_554delATAG	p.Asp184AlafsTer62	p.D184Afs*62	ENST00000269305	NM_001126112.2	184	gATAGc/gc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255265	16255265	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	402	520	0	ENST00000375759.3:c.2530C>T	p.Arg844Ter	p.R844*	ENST00000375759	NM_015001.2	844	Cga/Tga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	475229	475229	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3183	187	601	0	ENST00000399788.2:c.408G>T	p.Glu136Asp	p.E136D	ENST00000399788	NM_001042603.1	136	gaG/gaT																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350472	15350472	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0031613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	139	498	0	ENST00000263377.2:c.3443A>T	p.Gln1148Leu	p.Q1148L	ENST00000263377	NM_058243.2	1148	cAg/cTg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45872243	45872243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	217	539	0	ENST00000391945.4:c.191C>T	p.Pro64Leu	p.P64L	ENST00000391945	NM_000400.3	64	cCg/cTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928072	178928098	+	inframe_deletion	In_Frame_Del	DEL	TGGATTAGAAGATTTGCTGAACCCTAT	TGGATTAGAAGATTTGCTGAACCCTAT	-			P-0031647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	168	555	0	ENST00000263967.3:c.1353_1379del	p.Leu452_Gly460del	p.L452_G460del	ENST00000263967	NM_006218.2	450	caTGGATTAGAAGATTTGCTGAACCCTATt/cat																																																																															
BTK	695	MSKCC	GRCh37	X	100615113	100615113	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	259	524	0	ENST00000308731.7:c.802T>A	p.Tyr268Asn	p.Y268N	ENST00000308731	NM_000061.2	268	Tat/Aat																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176050374	176050377	+	frameshift_variant	Frame_Shift_Del	DEL	GGAC	GGAC	-			P-0031647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	100	488	0	ENST00000367669.3:c.1188_1191del	p.Lys398LeufsTer10	p.K398Lfs*10	ENST00000367669	NM_022457.5	396	ttGTCC/tt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373307	118373307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	224	540	0	ENST00000534358.1:c.6700G>A	p.Gly2234Arg	p.G2234R	ENST00000534358	NM_005933.3	2234	Ggg/Agg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21626547	21626547	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	120	471	0	ENST00000421138.2:c.1385T>G	p.Phe462Cys	p.F462C	ENST00000421138		462	tTt/tGt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396479	396479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	304	878	1	ENST00000262320.3:c.547G>A	p.Asp183Asn	p.D183N	ENST00000262320	NM_003502.3	183	Gac/Aac																																																																															
CDK12	51755	MSKCC	GRCh37	17	37649137	37649137	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	113	461	0	ENST00000447079.4:c.2242G>C	p.Asp748His	p.D748H	ENST00000447079	NM_015083.1	748	Gac/Cac																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155043	55155043	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	200	481	1	ENST00000257290.5:c.2752C>A	p.Pro918Thr	p.P918T	ENST00000257290	NM_006206.4	918	Cct/Act																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652011	36652011	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	133	724	0	ENST00000244741.5:c.133G>T	p.Ala45Ser	p.A45S	ENST00000244741	NM_000389.4	45	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	84	672	0	ENST00000269305.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000269305	NM_001126112.2	105	Ggc/Tgc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856208	111856208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	42	205	0	ENST00000341259.2:c.259C>A	p.Arg87Ser	p.R87S	ENST00000341259	NM_005475.2	87	Cgc/Agc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50815286	50815286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	79	519	0	ENST00000398568.2:c.1639C>T	p.Pro547Ser	p.P547S	ENST00000398568	NM_001042412.1	547	Ccg/Tcg																																																																															
NF1	4763	MSKCC	GRCh37	17	29509591	29509596	+	stop_gained	Nonsense_Mutation	ONP	GTTTGG	GTTTGG	TTTTGA			P-0031651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	78	563	0	ENST00000358273.4:c.796_801delinsTTTTGA	p.Val266_Trp267delinsPheTer	p.V266_W267delinsF*	ENST00000358273	NM_001042492.2	266	GTTTGG/TTTTGA																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268120	153268120	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	38	291	0	ENST00000281708.4:c.688C>G	p.Pro230Ala	p.P230A	ENST00000281708	NM_033632.3	230	Cca/Gca																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589147	67589151	+	frameshift_variant	Frame_Shift_Del	DEL	AAATT	AAATT	-			P-0031651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	42	311	0	ENST00000274335.5:c.1137_1141del	p.Lys379AsnfsTer14	p.K379Nfs*14	ENST00000274335		379	AAATTa/a																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672318	86672318	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	73	454	1	ENST00000274376.6:c.2120G>T	p.Arg707Leu	p.R707L	ENST00000274376	NM_002890.2	707	cGt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	272	632	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0031655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	135	701	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52438481	52438481	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	51	549	0	ENST00000460680.1:c.1238A>G	p.Asn413Ser	p.N413S	ENST00000460680	NM_004656.3	413	aAc/aGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575103	48575103	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	112	452	0	ENST00000342988.3:c.297G>A	p.Trp99Ter	p.W99*	ENST00000342988	NM_005359.5	99	tgG/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0031659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	131	511	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0031659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	138	670	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	64	452	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																															
TET1	80312	MSKCC	GRCh37	10	70405970	70405970	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	153	732	0	ENST00000373644.4:c.3484A>G	p.Lys1162Glu	p.K1162E	ENST00000373644	NM_030625.2	1162	Aag/Gag																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50479252	50479252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	152	472	0	ENST00000394963.4:c.100C>T	p.Pro34Ser	p.P34S	ENST00000394963	NM_003076.4	34	Ccg/Tcg																																																																															
CDH1	999	MSKCC	GRCh37	16	68849552	68849552	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	163	664	0	ENST00000261769.5:c.1455C>G	p.Ile485Met	p.I485M	ENST00000261769	NM_004360.3	485	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0030927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	471	766	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119758	70119758	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	552	779	0	ENST00000245479.2:c.760C>T	p.Arg254Ter	p.R254*	ENST00000245479	NM_000346.3	254	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0030927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	234	408	0	ENST00000257430.4:c.3944C>G	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tGa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11095038	11095038	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	590	908	0	ENST00000344626.4:c.211C>T	p.Gln71Ter	p.Q71*	ENST00000344626	NM_003072.3	71	Cag/Tag																																																																															
RAF1	5894	MSKCC	GRCh37	3	12641916	12641916	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0030927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	155	443	0	ENST00000251849.4:c.835-2A>G		p.X279_splice	ENST00000251849	NM_002880.3	279																																																																																
TSC1	7248	MSKCC	GRCh37	9	135786485	135786485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	465	761	0	ENST00000298552.3:c.1045C>T	p.Pro349Ser	p.P349S	ENST00000298552	NM_001162426.1	349	Cca/Tca																																																																															
ATRX	546	MSKCC	GRCh37	X	76937038	76937038	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0030927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	175	331	0	ENST00000373344.5:c.3710C>G	p.Ser1237Ter	p.S1237*	ENST00000373344	NM_000489.3	1237	tCa/tGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0031047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	158	593	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0031047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	220	562	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	113	534	0	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0031136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	53	341	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962846	2962846	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	43	575	0	ENST00000396946.4:c.2062C>T	p.Arg688Ter	p.R688*	ENST00000396946	NM_032415.4	688	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	21	245	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044901	47044901	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	116	741	0	ENST00000329236.7:c.1993G>T	p.Glu665Ter	p.E665*	ENST00000329236	NM_001204466.1	665	Gag/Tag																																																																															
SDHA	6389	MSKCC	GRCh37	5	235404	235404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	243	535	0	ENST00000264932.6:c.1210C>T	p.Pro404Ser	p.P404S	ENST00000264932	NM_004168.2	404	Ccc/Tcc																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	115	474	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591132	67591134	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	68	364	0	ENST00000274335.5:c.1727_1729delCGA	p.Thr576del	p.T576del	ENST00000274335		575	aaGACg/aag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47084146	47084146	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	106	445	1	ENST00000409792.3:c.7143del	p.Ser2382LeufsTer29	p.S2382Lfs*29	ENST00000409792	NM_014159.6	2381	ccC/cc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	153	730	3	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	285	471	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057937	27057937	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	152	594	1	ENST00000324856.7:c.1650delC	p.Tyr551ThrfsTer68	p.Y551Tfs*68	ENST00000324856	NM_006015.4	549	Ccc/cc																																																																															
BCL6	604	MSKCC	GRCh37	3	187446270	187446270	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	124	569	0	ENST00000232014.4:c.1418delC	p.Pro473ArgfsTer117	p.P473Rfs*117	ENST00000232014	NM_001130845.1	473	cCg/cg																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	313	507	0	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366309	15366309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	115	509	0	ENST00000263377.2:c.1846C>T	p.Arg616Trp	p.R616W	ENST00000263377	NM_058243.2	616	Cgg/Tgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630605	187630605	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	155	651	0	ENST00000441802.2:c.377del	p.Asn126IlefsTer20	p.N126Ifs*20	ENST00000441802	NM_005245.3	126	aAt/at																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276861	15276861	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	161	704	1	ENST00000263388.2:c.5404delG	p.Ala1802LeufsTer23	p.A1802Lfs*23	ENST00000263388	NM_000435.2	1802	Gct/ct																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	93	319	0	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																																																															
SMO	6608	MSKCC	GRCh37	7	128829075	128829075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1247591045		P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	13	26	0	ENST00000249373.3:c.88del	p.Ala30ArgfsTer25	p.A30Rfs*25	ENST00000249373	NM_005631.4	28	cGg/cg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	186	785	4	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216712	36216712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	112	435	1	ENST00000222270.7:c.3878G>A	p.Arg1293His	p.R1293H	ENST00000222270	NM_014727.1	1293	cGc/cAc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38614463	38614463	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	91	451	0	ENST00000299084.4:c.234del	p.Asp79ThrfsTer42	p.D79Tfs*42	ENST00000299084	NM_152594.2	77	Aaa/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	104	818	5	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201692	66201692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	118	510	0	ENST00000273854.3:c.2810G>A	p.Arg937His	p.R937H	ENST00000273854	NM_004439.5	937	cGt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	159	610	7	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																															
APC	324	MSKCC	GRCh37	5	112174188	112174189	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	199	482	0	ENST00000257430.4:c.2898dup	p.Val967CysfsTer3	p.V967Cfs*3	ENST00000257430	NM_000038.5	966	agt/agTt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220184	36220184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	134	527	1	ENST00000222270.7:c.4904G>A	p.Arg1635Gln	p.R1635Q	ENST00000222270	NM_014727.1	1635	cGa/cAa																																																																															
SDHA	6389	MSKCC	GRCh37	5	226052	226052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	64	97	0	ENST00000264932.6:c.511C>T	p.Arg171Cys	p.R171C	ENST00000264932	NM_004168.2	171	Cgt/Tgt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100399	8100399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	183	720	1	ENST00000346208.3:c.373G>A	p.Gly125Ser	p.G125S	ENST00000346208		125	Ggc/Agc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435156	49435156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	99	451	0	ENST00000301067.7:c.6397G>A	p.Ala2133Thr	p.A2133T	ENST00000301067	NM_003482.3	2133	Gcc/Acc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40860051	40860051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	201	596	0	ENST00000428826.2:c.1585C>T	p.Arg529Cys	p.R529C	ENST00000428826		529	Cgc/Tgc																																																																															
GNA11	2767	MSKCC	GRCh37	19	3115000	3115000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	219	712	1	ENST00000078429.4:c.535G>A	p.Val179Met	p.V179M	ENST00000078429	NM_002067.2	179	Gtg/Atg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143964	11143964	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	129	455	1	ENST00000344626.4:c.3547-2A>G		p.X1183_splice	ENST00000344626	NM_003072.3	1183																																																																																
PIK3R2	5296	MSKCC	GRCh37	19	18266718	18266718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	185	617	1	ENST00000222254.8:c.29G>A	p.Arg10His	p.R10H	ENST00000222254	NM_005027.3	10	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224257	36224273	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCCCGCCCCGCCAGG	CAGCCCGCCCCGCCAGG	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	171	684	0	ENST00000222270.7:c.6808_6824del	p.Ser2270HisfsTer27	p.S2270Hfs*27	ENST00000222270	NM_014727.1	2269	gcCAGCCCGCCCCGCCAGGcc/gccc																																																																															
CIC	23152	MSKCC	GRCh37	19	42793331	42793331	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	125	607	0	ENST00000575354.2:c.1135-2A>G		p.X379_splice	ENST00000575354	NM_015125.3	379																																																																																
POLD1	5424	MSKCC	GRCh37	19	50921184	50921184	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	140	670	0	ENST00000440232.2:c.3304C>A	p.Pro1102Thr	p.P1102T	ENST00000440232	NM_002691.3	1102	Cct/Act																																																																															
ATR	545	MSKCC	GRCh37	3	142177831	142177831	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	98	397	0	ENST00000350721.4:c.7472T>C	p.Val2491Ala	p.V2491A	ENST00000350721	NM_001184.3	2491	gTa/gCa																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430630	181430630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	126	509	0	ENST00000325404.1:c.482C>T	p.Ala161Val	p.A161V	ENST00000325404	NM_003106.3	161	gCg/gTg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807803	1807803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	145	722	0	ENST00000260795.2:c.1862G>A	p.Arg621His	p.R621H	ENST00000260795		621	cGc/cAc																																																																															
TET2	54790	MSKCC	GRCh37	4	106158109	106158109	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	101	396	0	ENST00000380013.4:c.3014del	p.Lys1005ArgfsTer2	p.K1005Rfs*2	ENST00000380013	NM_001127208.2	1004	Aaa/aa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557322	187557322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	193	580	0	ENST00000441802.2:c.4040C>A	p.Ser1347Tyr	p.S1347Y	ENST00000441802	NM_005245.3	1347	tCc/tAc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515379	149515379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	342	649	1	ENST00000261799.4:c.103G>A	p.Val35Ile	p.V35I	ENST00000261799	NM_002609.3	35	Gtc/Atc																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197360	26197360	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	121	423	0	ENST00000356476.2:c.119A>C	p.His40Pro	p.H40P	ENST00000356476		40	cAc/cCc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467928	50467928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	115	452	1	ENST00000331340.3:c.1163C>T	p.Ala388Val	p.A388V	ENST00000331340	NM_006060.4	388	gCg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151856144	151856144	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	76	407	0	ENST00000262189.6:c.11474C>A	p.Ala3825Asp	p.A3825D	ENST00000262189	NM_170606.2	3825	gCt/gAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877053	151877054	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	104	462	0	ENST00000262189.6:c.7307dupC	p.Pro2437ThrfsTer8	p.P2437Tfs*8	ENST00000262189	NM_170606.2	2436	cca/ccCa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371694	55371694	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	145	598	0	ENST00000297316.4:c.384del	p.His128GlnfsTer18	p.H128Qfs*18	ENST00000297316	NM_022454.3	128	caC/ca																																																																															
TEK	7010	MSKCC	GRCh37	9	27185621	27185621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	135	580	0	ENST00000380036.4:c.1321G>A	p.Val441Ile	p.V441I	ENST00000380036	NM_000459.3	441	Gtt/Att																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87356833	87356833	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	95	444	0	ENST00000277120.3:c.1186A>C	p.Ile396Leu	p.I396L	ENST00000277120		396	Att/Ctt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	448	770	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0031248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	84	303	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530058	63530058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	320	597	0	ENST00000307078.5:c.2377G>T	p.Glu793Ter	p.E793*	ENST00000307078	NM_004655.3	793	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0031302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	502	604	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604704	48604704	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	190	466	0	ENST00000342988.3:c.1526G>A	p.Trp509Ter	p.W509*	ENST00000342988	NM_005359.5	509	tGg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112175173	112175173	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	121	308	0	ENST00000257430.4:c.3883del	p.Glu1295LysfsTer10	p.E1295Kfs*10	ENST00000257430	NM_000038.5	1294	caG/ca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524175	187524176	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GGGCACCTTCCCTCTTCATTCAAAGAGGGGAG			P-0031302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	109	464	0	ENST00000441802.2:c.11351-19_11363dup	p.Pro3789SerfsTer4	p.P3789Sfs*4	ENST00000441802	NM_005245.3	3788	cca/ccCTCCCCTCTTTGAATGAAGAGGGAAGGTGCCCa																																																																															
APC	324	MSKCC	GRCh37	5	112116549	112116550	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	193	446	0	ENST00000257430.4:c.595dup	p.Ala199GlyfsTer53	p.A199Gfs*53	ENST00000257430	NM_000038.5	198	-/G																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953070	2953070	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	203	570	0	ENST00000396946.4:c.2870A>C	p.Asn957Thr	p.N957T	ENST00000396946	NM_032415.4	957	aAc/aCc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968136	68968136	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	193	603	0	ENST00000288368.4:c.1165A>T	p.Met389Leu	p.M389L	ENST00000288368	NM_024870.2	389	Atg/Ttg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0031459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	53	637	3	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0031459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	113	639	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0031459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	91	650	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46527695	46527695	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	28	435	0	ENST00000262741.5:c.670A>C	p.Lys224Gln	p.K224Q	ENST00000262741	NM_003629.3	224	Aaa/Caa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55260498	55260498	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	102	597	0	ENST00000275493.2:c.2665A>G	p.Arg889Gly	p.R889G	ENST00000275493	NM_005228.3	889	Aga/Gga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720808	89720808	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	133	268	0	ENST00000371953.3:c.959T>C	p.Leu320Ser	p.L320S	ENST00000371953	NM_000314.4	320	tTa/tCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	304	541	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576853	7576853	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs11575996		P-0031462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	320	568	0	ENST00000269305.4:c.993G>T	p.Gln331His	p.Q331H	ENST00000269305	NM_001126112.2	331	caG/caT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420213	49420213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	327	555	2	ENST00000301067.7:c.15536G>T	p.Arg5179Leu	p.R5179L	ENST00000301067	NM_003482.3	5179	cGt/cTt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11288754	11288754	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	228	477	0	ENST00000361445.4:c.3001A>G	p.Ile1001Val	p.I1001V	ENST00000361445	NM_004958.3	1001	Att/Gtt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981875	201981875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	429	716	0	ENST00000359651.3:c.586G>A	p.Val196Ile	p.V196I	ENST00000359651		196	Gtc/Atc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16005051	16005051	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	284	519	0	ENST00000268712.3:c.2203G>T	p.Glu735Ter	p.E735*	ENST00000268712	NM_006311.3	735	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610275	10610275	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	386	751	0	ENST00000171111.5:c.435C>G	p.Ile145Met	p.I145M	ENST00000171111	NM_203500.1	145	atC/atG																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969942	161969942	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	259	504	0	ENST00000366898.1:c.1027C>A	p.Pro343Thr	p.P343T	ENST00000366898	NM_004562.2	343	Ccg/Acg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238954	5238956	+	missense_variant	Missense_Mutation	ONP	CCA	CCA	ACC			P-0031462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	172	482	0	ENST00000357368.4:c.1823_1825delinsGGT	p.Val608_Val609delinsGlyLeu	p.V608_V609delinsGL	ENST00000357368	NM_002850.3	608	gTGGtg/gGGTtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	63	478	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	26	632	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81574756	81574756	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	51	445	0	ENST00000298171.2:c.652A>G	p.Lys218Glu	p.K218E	ENST00000298171	NM_000369.2	218	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0031466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	245	759	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412690	139412690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	191	802	0	ENST00000277541.6:c.1154C>T	p.Ser385Phe	p.S385F	ENST00000277541	NM_017617.3	385	tCc/tTc																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	199	368	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																															
BCL6	604	MSKCC	GRCh37	3	187447709	187447709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	74	523	0	ENST00000232014.4:c.484G>A	p.Val162Met	p.V162M	ENST00000232014	NM_001130845.1	162	Gtg/Atg																																																																															
TET1	80312	MSKCC	GRCh37	10	70405253	70405253	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	120	564	0	ENST00000373644.4:c.2767A>G	p.Thr923Ala	p.T923A	ENST00000373644	NM_030625.2	923	Aca/Gca																																																																															
TET1	80312	MSKCC	GRCh37	10	70405272	70405272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	110	566	0	ENST00000373644.4:c.2786G>T	p.Ser929Ile	p.S929I	ENST00000373644	NM_030625.2	929	aGc/aTc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120751	115120751	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	71	673	0	ENST00000257566.3:c.255del	p.His86IlefsTer2	p.H86Ifs*2	ENST00000257566	NM_016569.3	85	gcG/gc																																																																															
BARD1	580	MSKCC	GRCh37	2	215610509	215610509	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	113	507	0	ENST00000260947.4:c.1747A>G	p.Lys583Glu	p.K583E	ENST00000260947	NM_000465.2	583	Aaa/Gaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628022	187628022	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	138	601	0	ENST00000441802.2:c.2960del	p.Gln987ArgfsTer15	p.Q987Rfs*15	ENST00000441802	NM_005245.3	987	cAg/cg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129495	152129495	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	18	173	0	ENST00000206249.3:c.448T>G	p.Tyr150Asp	p.Y150D	ENST00000206249	NM_000125.3	150	Tac/Gac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971147	21971151	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGC	TGGGC	-			P-0031466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	84	462	0	ENST00000304494.5:c.207_211del	p.Pro70LeufsTer48	p.P70Lfs*48	ENST00000304494	NM_000077.4	69	gaGCCCAac/gaac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413274	139413274	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0031466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	182	642	0	ENST00000277541.6:c.868C>T	p.Gln290Ter	p.Q290*	ENST00000277541	NM_017617.3	290	Cag/Tag																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0031575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	147	458	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099325	27099325	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	154	532	1	ENST00000324856.7:c.3562C>T	p.Gln1188Ter	p.Q1188*	ENST00000324856	NM_006015.4	1188	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112164619	112164619	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	130	364	1	ENST00000257430.4:c.1693G>T	p.Glu565Ter	p.E565*	ENST00000257430	NM_000038.5	565	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	100	578	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0031578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	154	732	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0031578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	35	230	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
APC	324	MSKCC	GRCh37	5	112173590	112173590	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	61	403	0	ENST00000257430.4:c.2299C>T	p.Gln767Ter	p.Q767*	ENST00000257430	NM_000038.5	767	Cag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251937	153251937	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0031578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	70	653	0	ENST00000281708.4:c.1069A>T	p.Arg357Ter	p.R357*	ENST00000281708	NM_033632.3	357	Aga/Tga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707798	176707798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	80	489	0	ENST00000439151.2:c.5855G>A	p.Arg1952Gln	p.R1952Q	ENST00000439151	NM_022455.4	1952	cGg/cAg																																																																															
IRF4	3662	MSKCC	GRCh37	6	394926	394926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	115	534	0	ENST00000380956.4:c.322G>A	p.Glu108Lys	p.E108K	ENST00000380956	NM_001195286.1	108	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	97	614	1	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	209	648	2	ENST00000311189.7:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000311189		61	cAg/cTg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67670728	67670728	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	109	548	1	ENST00000264010.4:c.1973G>T	p.Arg658Ile	p.R658I	ENST00000264010	NM_006565.3	658	aGa/aTa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945719	17945719	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140655992		P-0031583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	140	638	4	ENST00000458235.1:c.2141C>T	p.Thr714Met	p.T714M	ENST00000458235	NM_000215.3	714	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578551	7578565	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTACTGTAGGAAGA	AGTACTGTAGGAAGA	-			P-0031583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	267	698	0	ENST00000269305.4:c.376-11_379del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
RHOA	387	MSKCC	GRCh37	3	49413009	49413009	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	122	613	0	ENST00000418115.1:c.14G>T	p.Arg5Leu	p.R5L	ENST00000418115	NM_001664.2	5	cGg/cTg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502855	186502856	+	inframe_insertion	In_Frame_Ins	INS	-	-	TAG			P-0031583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	122	504	0	ENST00000323963.5:c.316_318dup	p.Val106dup	p.V106dup	ENST00000323963		106	cta/cTAGta																																																																															
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0031584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	92	678	2	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591125	67591125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	144	438	0	ENST00000274335.5:c.1718T>C	p.Leu573Pro	p.L573P	ENST00000274335		573	cTg/cCg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020769	37020769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	41	591	0	ENST00000358127.4:c.76del	p.Val26PhefsTer3	p.V26Ffs*3	ENST00000358127	NM_001280556.1	26	Gtt/tt																																																																															
MGA	23269	MSKCC	GRCh37	15	42052636	42052636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	91	523	0	ENST00000219905.7:c.7307G>A	p.Arg2436His	p.R2436H	ENST00000219905	NM_001164273.1	2436	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604668	48604668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	128	378	0	ENST00000342988.3:c.1490G>A	p.Arg497His	p.R497H	ENST00000342988	NM_005359.5	497	cGc/cAc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94211962	94211962	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	95	621	0	ENST00000323929.3:c.483G>C	p.Lys161Asn	p.K161N	ENST00000323929	NM_005591.3	161	aaG/aaC																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119925	70119926	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	125	503	0	ENST00000245479.2:c.928dup	p.His310ProfsTer268	p.H310Pfs*268	ENST00000245479	NM_000346.3	309	-/C																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39613862	39613862	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	172	533	0	ENST00000262039.4:c.1780C>A	p.Pro594Thr	p.P594T	ENST00000262039	NM_002647.2	594	Cct/Act																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266024	41266592	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	GATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACA	GATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACA	-			P-0031584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	98	236	0	ENST00000349496.5:c.25_393del		p.X9_splice	ENST00000349496	NM_001904.3	9	ttGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAg/ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0007369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	767	902	13	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACCCCC			P-0007369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			932	1111	629	15	ENST00000275493.2:c.2311_2319dup	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	gac/gACAACCCCCac																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633569	69633569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			182	105	247	6	ENST00000334134.2:c.133C>T	p.Arg45Cys	p.R45C	ENST00000334134	NM_005247.2	45	Cgc/Tgc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134003	41134003	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145453868		P-0007369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			182	302	535	6	ENST00000379561.5:c.1625C>T	p.Thr542Met	p.T542M	ENST00000379561	NM_002015.3	542	aCg/aTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356098	66356098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			419	186	490	3	ENST00000273854.3:c.1399G>T	p.Ala467Ser	p.A467S	ENST00000273854	NM_004439.5	467	Gca/Tca																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680071	30680071	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007369-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			878	283	742	0	ENST00000376406.3:c.1648C>T	p.Gln550Ter	p.Q550*	ENST00000376406	NM_014641.2	550	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026599-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			609	46	470	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026599-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			430	37	344	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																															
STK11	6794	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026599-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			717	70	575	0	ENST00000326873.7:c.709G>T	p.Asp237Tyr	p.D237Y	ENST00000326873	NM_000455.4	237	Gac/Tac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602757	10602757	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026599-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			801	70	638	0	ENST00000171111.5:c.821A>G	p.His274Arg	p.H274R	ENST00000171111	NM_203500.1	274	cAc/cGc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11129670	11129670	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026599-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			722	68	571	0	ENST00000344626.4:c.2476G>C	p.Ala826Pro	p.A826P	ENST00000344626	NM_003072.3	826	Gcc/Ccc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935516	13935516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026599-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			408	47	296	0	ENST00000405192.2:c.1340C>T	p.Pro447Leu	p.P447L	ENST00000405192	NM_001163147.1	447	cCc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0027418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	415	574	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579701	7579702	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0027418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	237	528	0	ENST00000269305.4:c.94_95del	p.Leu32ValfsTer10	p.L32Vfs*10	ENST00000269305	NM_001126112.2	32	CTg/g																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974773	21974777	+	frameshift_variant	Frame_Shift_Del	DEL	CGTGG	CGTGG	-			P-0027418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	130	188	0	ENST00000304494.5:c.50_54del	p.Ala17GlyfsTer25	p.A17Gfs*25	ENST00000304494	NM_000077.4	17	gCCACG/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	192	535	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RB1	5925	MSKCC	GRCh37	13	49033968	49033968	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0027684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	88	440	0	ENST00000267163.4:c.2105A>T	p.Gln702Leu	p.Q702L	ENST00000267163	NM_000321.2	702	cAa/cTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1219359	1219360	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AT			P-0027684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	136	737	3	ENST00000326873.7:c.411_412delinsAT	p.Glu138Ter	p.E138*	ENST00000326873	NM_000455.4	137	caGGaa/caATaa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602490	10602490	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	151	480	0	ENST00000171111.5:c.1088G>C	p.Ser363Thr	p.S363T	ENST00000171111	NM_203500.1	363	aGc/aCc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170515	11170516	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	198	724	0	ENST00000344626.4:c.4722_4723insT	p.Ser1575Ter	p.S1575*	ENST00000344626	NM_003072.3	1574	-/T																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	44	385	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860829	151860829	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	28	279	0	ENST00000262189.6:c.9833C>A	p.Pro3278His	p.P3278H	ENST00000262189	NM_170606.2	3278	cCt/cAt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100438	8100438	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	208	692	1	ENST00000346208.3:c.412T>A	p.Ser138Thr	p.S138T	ENST00000346208		138	Tcc/Acc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94153299	94153299	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	254	464	1	ENST00000323929.3:c.2119A>T	p.Arg707Ter	p.R707*	ENST00000323929	NM_005591.3	707	Aga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	362	375	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423603	88423603	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	210	438	0	ENST00000360948.2:c.2232C>A	p.Tyr744Ter	p.Y744*	ENST00000360948	NM_001012338.2	744	taC/taA																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81927370	81927370	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	646	624	0	ENST00000359376.3:c.1043G>T	p.Cys348Phe	p.C348F	ENST00000359376	NM_002661.3	348	tGc/tTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221338	1221627	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTGGGAGCCTCATCCCTCTGCCCGCAGCCCCAGGGAGGCGGGGCTTTTGTGCAGAAATGTAGGGTTGGGGGTGTCAGGTGGGGGGCTATTGGCCCCGAGACCCCAGCAGGCATTGAGAGGACTGAGTGGAGAGGCCGACCTCCCCGCAGGGCCTGGTTTGCCAGGTCCCTCAGCTCCACCCTGCTTCTGGGCCCTGTTCACCCTCCGAACTCCCACCCCAGAGGGCAGTGCTGCCCTGCGCCTCCCCCAGCCCCACCCTCGGGGGCTCCCTGGCTTGCAGGGTCTGTC	AGGTGGGAGCCTCATCCCTCTGCCCGCAGCCCCAGGGAGGCGGGGCTTTTGTGCAGAAATGTAGGGTTGGGGGTGTCAGGTGGGGGGCTATTGGCCCCGAGACCCCAGCAGGCATTGAGAGGACTGAGTGGAGAGGCCGACCTCCCCGCAGGGCCTGGTTTGCCAGGTCCCTCAGCTCCACCCTGCTTCTGGGCCCTGTTCACCCTCCGAACTCCCACCCCAGAGGGCAGTGCTGCCCTGCGCCTCCCCCAGCCCCACCCTCGGGGGCTCCCTGGCTTGCAGGGTCTGTC	-			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	465	510	0	ENST00000326873.7:c.862+2_862+291del		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																																
DOT1L	84444	MSKCC	GRCh37	19	2185863	2185891	+	frameshift_variant	Frame_Shift_Del	DEL	TGAAGAAATCCCGGATCTCAAGCTCGCTA	TGAAGAAATCCCGGATCTCAAGCTCGCTA	-			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	451	628	0	ENST00000398665.3:c.137_165del	p.Glu46GlyfsTer7	p.E46Gfs*7	ENST00000398665	NM_032482.2	45	tgTGAAGAAATCCCGGATCTCAAGCTCGCTAtg/tgtg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600395	10600395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	798	728	0	ENST00000171111.5:c.1460C>G	p.Ala487Gly	p.A487G	ENST00000171111	NM_203500.1	487	gCt/gGt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306776	41306776	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	147	303	0	ENST00000373198.4:c.883C>A	p.Pro295Thr	p.P295T	ENST00000373198	NM_133170.3	295	Cca/Aca																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231763	66231763	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	94	340	0	ENST00000273854.3:c.1937G>T	p.Gly646Val	p.G646V	ENST00000273854	NM_004439.5	646	gGa/gTa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38279390	38279390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	342	628	0	ENST00000425967.3:c.1099G>C	p.Ala367Pro	p.A367P	ENST00000425967	NM_001174067.1	367	Gca/Cca																																																																															
PREX2	80243	MSKCC	GRCh37	8	69039645	69039645	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	275	374	0	ENST00000288368.4:c.3757G>T	p.Glu1253Ter	p.E1253*	ENST00000288368	NM_024870.2	1253	Gaa/Taa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319833	8319833	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	126	280	0	ENST00000356435.5:c.5668G>T	p.Glu1890Ter	p.E1890*	ENST00000356435		1890	Gag/Tag																																																																															
TSC1	7248	MSKCC	GRCh37	9	135787713	135787713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	475	504	0	ENST00000298552.3:c.869C>T	p.Ala290Val	p.A290V	ENST00000298552	NM_001162426.1	290	gCc/gTc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123185069	123185069	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	204	493	0	ENST00000218089.9:c.1116G>T	p.Lys372Asn	p.K372N	ENST00000218089	NM_001042749.1	372	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7579408	7579460	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTG	CAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTG	-			P-0028293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	285	367	2	ENST00000269305.4:c.227_279delCACCAGCAGCTCCTACACCGGCGGCCCCTGCACCAGCCCCCTCCTGGCCCCTG	p.Ala76ValfsTer55	p.A76Vfs*55	ENST00000269305	NM_001126112.2	76	gCACCAGCAGCTCCTACACCGGCGGCCCCTGCACCAGCCCCCTCCTGGCCCCTG/g																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272029	15272030	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0028293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	207	315	0	ENST00000263388.2:c.6409_6410del	p.Leu2137GlyfsTer104	p.L2137Gfs*104	ENST00000263388	NM_000435.2	2137	CTg/g																																																																															
PMS1	5378	MSKCC	GRCh37	2	190718675	190718675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	186	238	0	ENST00000441310.2:c.833A>G	p.His278Arg	p.H278R	ENST00000441310	NM_000534.4	278	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	17	437	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1355	40	564	0	ENST00000269305.4:c.503A>T	p.His168Leu	p.H168L	ENST00000269305	NM_001126112.2	168	cAc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0028676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	48	607	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0028676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	53	530	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593387	48593387	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0028676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	18	246	1	ENST00000342988.3:c.1140-2A>T		p.X380_splice	ENST00000342988	NM_005359.5	380																																																																																
MGA	23269	MSKCC	GRCh37	15	42042101	42042107	+	frameshift_variant	Frame_Shift_Del	DEL	AAAATTT	AAAATTT	-			P-0028676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	38	573	0	ENST00000219905.7:c.6298_6304del	p.Asn2100ValfsTer11	p.N2100Vfs*11	ENST00000219905	NM_001164273.1	2099	cAAAATTTa/ca																																																																															
MGA	23269	MSKCC	GRCh37	15	42042118	42042118	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	38	558	1	ENST00000219905.7:c.6313C>T	p.Gln2105Ter	p.Q2105*	ENST00000219905	NM_001164273.1	2105	Cag/Tag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3842075	3842075	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	200	360	0	ENST00000262367.5:c.1237C>T	p.Arg413Ter	p.R413*	ENST00000262367	NM_004380.2	413	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3801726	3801726	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0028693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	308	506	0	ENST00000262367.5:c.3779+1G>A		p.X1260_splice	ENST00000262367	NM_004380.2	1260																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44949128	44949129	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	316	484	0	ENST00000377967.4:c.3690dup	p.Ile1231TyrfsTer20	p.I1231Yfs*20	ENST00000377967	NM_021140.2	1230	gct/gcTt																																																																															
MGA	23269	MSKCC	GRCh37	15	42035295	42035301	+	frameshift_variant	Frame_Shift_Del	DEL	CCAACTT	CCAACTT	-			P-0028693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	305	530	0	ENST00000219905.7:c.5138_5144del	p.Pro1713HisfsTer19	p.P1713Hfs*19	ENST00000219905	NM_001164273.1	1713	CCAACTTca/ca																																																																															
EP300	2033	MSKCC	GRCh37	22	41523614	41523616	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0028693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	685	651	0	ENST00000263253.7:c.1032_1034del	p.Leu346del	p.L346del	ENST00000263253	NM_001429.3	344	CTC/-																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266061	41266062	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	188	346	0	ENST00000349496.5:c.59dup	p.Ala21GlyfsTer3	p.A21Gfs*3	ENST00000349496	NM_001904.3	20	gcg/gCcg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900122	151900122	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	152	253	0	ENST00000262189.6:c.3989del	p.Leu1330Ter	p.L1330*	ENST00000262189	NM_170606.2	1330	tTa/ta																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132824	152132842	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCGGCGGCTGCGGCTGC	TGGCGGCGGCTGCGGCTGC	-			P-0028693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	33	524	0	ENST00000262189.6:c.30_48del	p.Glu10AspfsTer89	p.E10Dfs*89	ENST00000262189	NM_170606.2	10	gaGCAGCCGCAGCCGCCGCCA/ga																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513281	44513282	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCACCG			P-0029301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	13	593	0	ENST00000291552.4:c.648_653dup	p.Gly222_Gly223dup	p.G222_G223dup	ENST00000291552	NM_006758.2	222	ggt/ggCGGTGGt																																																																															
ALK	238	MSKCC	GRCh37	2	29416378	29416380	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0029301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	22	645	0	ENST00000389048.3:c.4573_4575del	p.Lys1525del	p.K1525del	ENST00000389048	NM_004304.4	1525	AAG/-																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733279	40733279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201275244		P-0029301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	20	444	1	ENST00000373198.4:c.3527G>A	p.Arg1176His	p.R1176H	ENST00000373198	NM_133170.3	1176	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105537	27105553	+	protein_altering_variant	In_Frame_Del	DEL	TGTAGAATATTTCCGAC	TGTAGAATATTTCCGAC	GG			P-0029301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	17	367	2	ENST00000324856.7:c.5148_5164delinsGG	p.Val1717_Arg1722delinsGly	p.V1717_R1722delinsG	ENST00000324856	NM_006015.4	1716	ctTGTAGAATATTTCCGACga/ctGGga																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742483	17742483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	44	555	0	ENST00000250003.3:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000250003	NM_002478.4	222	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49418596	49418596	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	30	449	0	ENST00000301067.7:c.15918A>T	p.Glu5306Asp	p.E5306D	ENST00000301067	NM_003482.3	5306	gaA/gaT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610606	10610606	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	57	631	0	ENST00000171111.5:c.104C>G	p.Ser35Cys	p.S35C	ENST00000171111	NM_203500.1	35	tCc/tGc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144124	11144134	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGAAGTCCT	CCAGAAGTCCT	-			P-0029301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	18	595	0	ENST00000344626.4:c.3709_3719del	p.Lys1237ProfsTer2	p.K1237Pfs*2	ENST00000344626	NM_003072.3	1235	gaCCAGAAGTCCTcc/gacc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366149	15366149	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	44	494	0	ENST00000263377.2:c.2006G>T	p.Arg669Leu	p.R669L	ENST00000263377	NM_058243.2	669	cGc/cTc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248342	212248342	+	stop_lost	Nonstop_Mutation	SNP	A	A	T			P-0029301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	10	171	0	ENST00000342788.4:c.3925T>A	p.Ter1309LysextTer33	p.*1309Kext*33	ENST00000342788	NM_005235.2	1309	Taa/Aaa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827952	40827953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	24	404	0	ENST00000373198.4:c.2475dup	p.Pro826ThrfsTer11	p.P826Tfs*11	ENST00000373198	NM_133170.3	825	-/A																																																																															
KDR	3791	MSKCC	GRCh37	4	55968172	55968173	+	missense_variant	Missense_Mutation	DNP	GG	GG	CC			P-0029301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	17	343	2	ENST00000263923.4:c.2157_2158inv	p.Asn719_Arg720delinsLysGly	p.N719_R720delinsKG	ENST00000263923	NM_002253.2	719	aaCCgg/aaGGgg																																																																															
MED12	9968	MSKCC	GRCh37	X	70340879	70340879	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0029301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	26	258	0	ENST00000374080.3:c.612C>G	p.Tyr204Ter	p.Y204*	ENST00000374080		204	taC/taG																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913078	32913078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	129	596	0	ENST00000380152.3:c.4586G>A	p.Gly1529Glu	p.G1529E	ENST00000380152		1529	gGg/gAg																																																																															
CDH1	999	MSKCC	GRCh37	16	68862177	68862177	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	209	523	0	ENST00000261769.5:c.2265del	p.Tyr755Ter	p.Y755*	ENST00000261769	NM_004360.3	755	taT/ta																																																																															
TP53	7157	MSKCC	GRCh37	17	7576882	7576883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTC			P-0030989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	236	674	0	ENST00000269305.4:c.960_963dup	p.Pro322GlufsTer16	p.P322Efs*16	ENST00000269305	NM_001126112.2	321	-/GAAA																																																																															
AKT2	208	MSKCC	GRCh37	19	40744837	40744837	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	128	761	0	ENST00000392038.2:c.683T>C	p.Val228Ala	p.V228A	ENST00000392038	NM_001626.4	228	gTg/gCg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807368	1807368	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	108	616	0	ENST00000260795.2:c.1617C>G	p.Ile539Met	p.I539M	ENST00000260795		539	atC/atG																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953012	2953012	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	209	797	0	ENST00000396946.4:c.2928del	p.Val977CysfsTer88	p.V977Cfs*88	ENST00000396946	NM_032415.4	976	ccC/cc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8733778	8733778	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0030989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	86	605	0	ENST00000356435.5:c.64+2T>C		p.X22_splice	ENST00000356435		22																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37879628	37880645	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGTGGTCTTTGGGATCCTCATCAAGCGACGGCAGCAGAAGATCCGGAAGTACACGATGCGGAGACTGCTGCAGGAAACGGAGGTGAGGCGGGGTGAAGTCCTCCCAGCCCGCGTGGGGTCTGCACCGGCCCCCGGCACTGACCCACCACCCCCTCACCCCAGCTGGTGGAGCCGCTGACACCTAGCGGAGCGATGCCCAACCAGGCGCAGATGCGGATCCTGAAAGAGACGGAGCTGAGGAAGGTGAAGGTGCTTGGATCTGGCGCTTTTGGCACAGTCTACAAGGTCAGGGCCAGGTCCTGGGGTGGGCGGCCCCAGAGGATGGGGGCGGTGCCTGGAGGGGTGTGGTCGGCAGTTCTGATGGGAGGGGCAAGAGCTGGAGGCAGTGTTTGGGGGAGGGCAGTTACAGCGGAGAAGGGAGCGGGGCCAAGCCCTAGGGTGGTGAAGGATGTTTGGAGGACAAGTAATGATCTCCTGGAAGGCAGGTAGGATCCAGCCCACGCTCTTCTCACTCATATCCTCCTCTTTCTGCCCAGGGCATCTGGATCCCTGATGGGGAGAATGTGAAAATTCCAGTGGCCATCAAAGTGTTGAGGGAAAACACATCCCCCAAAGCCAACAAAGAAATCTTAGACGTAAGCCCCTCCACCCTCTCCTGCTAGGAGGACAGGAAGGACCCCATGGCTGCAGGTCTGGGCTCTGGTCTCTCTTCATTGGGGTTTGGGGAGATATGACTCCCGCAAACCTAGACTATTTTTTTGGAGACGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGTTATCTCGGCTCACTGCAACCTCCACCTCCTGGACTCAAGCGATTTTCATGCCTCAGGCTCCTGAGTAGCTGGGATTACAAGCGCCCGCTAATTTTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTAGAGTGAAATGGTGCGGTCTCAGCTCAGCCTCCCAGGTTAAAGCGATTCTTCTCCCTCAGTCTCCTGAGTAGCT	GGGTGGTCTTTGGGATCCTCATCAAGCGACGGCAGCAGAAGATCCGGAAGTACACGATGCGGAGACTGCTGCAGGAAACGGAGGTGAGGCGGGGTGAAGTCCTCCCAGCCCGCGTGGGGTCTGCACCGGCCCCCGGCACTGACCCACCACCCCCTCACCCCAGCTGGTGGAGCCGCTGACACCTAGCGGAGCGATGCCCAACCAGGCGCAGATGCGGATCCTGAAAGAGACGGAGCTGAGGAAGGTGAAGGTGCTTGGATCTGGCGCTTTTGGCACAGTCTACAAGGTCAGGGCCAGGTCCTGGGGTGGGCGGCCCCAGAGGATGGGGGCGGTGCCTGGAGGGGTGTGGTCGGCAGTTCTGATGGGAGGGGCAAGAGCTGGAGGCAGTGTTTGGGGGAGGGCAGTTACAGCGGAGAAGGGAGCGGGGCCAAGCCCTAGGGTGGTGAAGGATGTTTGGAGGACAAGTAATGATCTCCTGGAAGGCAGGTAGGATCCAGCCCACGCTCTTCTCACTCATATCCTCCTCTTTCTGCCCAGGGCATCTGGATCCCTGATGGGGAGAATGTGAAAATTCCAGTGGCCATCAAAGTGTTGAGGGAAAACACATCCCCCAAAGCCAACAAAGAAATCTTAGACGTAAGCCCCTCCACCCTCTCCTGCTAGGAGGACAGGAAGGACCCCATGGCTGCAGGTCTGGGCTCTGGTCTCTCTTCATTGGGGTTTGGGGAGATATGACTCCCGCAAACCTAGACTATTTTTTTGGAGACGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGTTATCTCGGCTCACTGCAACCTCCACCTCCTGGACTCAAGCGATTTTCATGCCTCAGGCTCCTGAGTAGCTGGGATTACAAGCGCCCGCTAATTTTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTAGAGTGAAATGGTGCGGTCTCAGCTCAGCCTCCCAGGTTAAAGCGATTCTTCTCCCTCAGTCTCCTGAGTAGCT	-			P-0030989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			10980	600	692	0	ENST00000269571.5:c.2006_2308-331del		p.X669_splice	ENST00000269571		669																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0030998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	219	699	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	56	623	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
CCND3	896	MSKCC	GRCh37	6	41909235	41909235	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	58	648	0	ENST00000372991.4:c.153G>C	p.Glu51Asp	p.E51D	ENST00000372991	NM_001760.3	51	gaG/gaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	98	511	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0031003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	125	584	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020754	37020754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	121	540	3	ENST00000358127.4:c.91C>T	p.Arg31Trp	p.R31W	ENST00000358127	NM_001280556.1	31	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492938	56492938	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0031003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	45	201	0	ENST00000407977.2:c.1A>G	p.Met1?	p.M1?	ENST00000407977		1	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0031274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	263	595	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	82	354	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852060	63852060	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	32	557	0	ENST00000279873.7:c.2838G>C	p.Gln946His	p.Q946H	ENST00000279873	NM_032199.2	946	caG/caC																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060925	38060925	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0031274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	35	338	0	ENST00000250448.2:c.1064C>G	p.Ser355Ter	p.S355*	ENST00000250448	NM_004496.3	355	tCa/tGa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81534654	81534654	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0031274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	101	453	0	ENST00000298171.2:c.299T>A	p.Leu100Ter	p.L100*	ENST00000298171	NM_000369.2	100	tTg/tAg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470572	25470572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	121	734	0	ENST00000264709.3:c.902G>A	p.Arg301Gln	p.R301Q	ENST00000264709	NM_175629.2	301	cGg/cAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076860	41076860	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0031274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	86	390	0	ENST00000373198.4:c.1560G>T	p.Glu520Asp	p.E520D	ENST00000373198	NM_133170.3	520	gaG/gaT																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799975	72799975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	127	289	0	ENST00000325599.8:c.1194G>T	p.Leu398Phe	p.L398F	ENST00000325599	NM_018130.2	398	ttG/ttT																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143226656	143226656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	67	407	0	ENST00000262992.4:c.458G>A	p.Gly153Glu	p.G153E	ENST00000262992	NM_001101669.1	153	gGa/gAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517741	187517741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	46	200	0	ENST00000441802.2:c.12953C>T	p.Ser4318Phe	p.S4318F	ENST00000441802	NM_005245.3	4318	tCt/tTt																																																																															
TAP1	6890	MSKCC	GRCh37	6	32814973	32814973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	41	486	0	ENST00000354258.4:c.2092G>A	p.Glu698Lys	p.E698K	ENST00000354258	NM_000593.5	698	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0031324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	1747	561	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0031324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	494	712	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720801	89720802	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	65	225	0	ENST00000371953.3:c.954dup	p.Thr319TyrfsTer6	p.T319Yfs*6	ENST00000371953	NM_000314.4	318	ctt/cTtt																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80537256	80537263	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	CTGTCCCT	CTGTCCCT	-			P-0031324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	188	631	0	ENST00000286548.4:c.137-2_142del		p.X46_splice	ENST00000286548	NM_002072.3	46																																																																																
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0031326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	58	625	2	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123695	46123695	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	18	206	0	ENST00000334344.6:c.76T>C	p.Phe26Leu	p.F26L	ENST00000334344	NM_152641.2	26	Ttc/Ctc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0031327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	66	549	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577061	7577070	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTCTTGCG	CTTTCTTGCG	-			P-0031327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	89	824	0	ENST00000269305.4:c.868_877del	p.Arg290GlyfsTer52	p.R290Gfs*52	ENST00000269305	NM_001126112.2	290	CGCAAGAAAGgg/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	105	452	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576924	7576925	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0031328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	104	613	0	ENST00000269305.4:c.921dup	p.Leu308ThrfsTer29	p.L308Tfs*29	ENST00000269305	NM_001126112.2	307	-/A																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584546	48584546	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	78	469	0	ENST00000342988.3:c.719T>A	p.Ile240Lys	p.I240K	ENST00000342988	NM_005359.5	240	aTa/aAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584813	48584814	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	57	366	0	ENST00000342988.3:c.891_892insA	p.Pro298ThrfsTer10	p.P298Tfs*10	ENST00000342988	NM_005359.5	297	-/A																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710735	117710735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	60	453	0	ENST00000368508.3:c.1537G>T	p.Asp513Tyr	p.D513Y	ENST00000368508	NM_002944.2	513	Gat/Tat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845753	151845753	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	90	639	0	ENST00000262189.6:c.13259T>C	p.Leu4420Pro	p.L4420P	ENST00000262189	NM_170606.2	4420	cTc/cCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0031350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	174	692	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	160	480	1	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31493360	31493360	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	79	472	0	ENST00000344624.3:c.1796A>T	p.Tyr599Phe	p.Y599F	ENST00000344624		599	tAt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578415	7578415	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	163	661	0	ENST00000269305.4:c.515T>A	p.Val172Asp	p.V172D	ENST00000269305	NM_001126112.2	172	gTt/gAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836299	151836299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	126	523	0	ENST00000262189.6:c.14506G>T	p.Asp4836Tyr	p.D4836Y	ENST00000262189	NM_170606.2	4836	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0031358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	79	612	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
BLM	641	MSKCC	GRCh37	15	91295052	91295052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	35	412	0	ENST00000355112.3:c.835G>A	p.Glu279Lys	p.E279K	ENST00000355112	NM_000057.2	279	Gaa/Aaa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265194	46265194	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	44	390	0	ENST00000371998.3:c.2064G>C	p.Leu688Phe	p.L688F	ENST00000371998		688	ttG/ttC																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793566	89793569	+	frameshift_variant	Frame_Shift_Del	DEL	ACAG	ACAG	-			P-0031358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	25	364	2	ENST00000336032.3:c.640_643del	p.Gln214LysfsTer8	p.Q214Kfs*8	ENST00000336032	NM_006813.2	212	aACAGa/aa																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882084	36882084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	70	711	0	ENST00000358127.4:c.929C>T	p.Thr310Met	p.T310M	ENST00000358127	NM_001280556.1	310	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0031360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	205	690	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741577	17741577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	89	369	1	ENST00000250003.3:c.248C>T	p.Ala83Val	p.A83V	ENST00000250003	NM_002478.4	83	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0031360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	159	318	1	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
EP300	2033	MSKCC	GRCh37	22	41574323	41574323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	84	737	1	ENST00000263253.7:c.6608C>T	p.Pro2203Leu	p.P2203L	ENST00000263253	NM_001429.3	2203	cCt/cTt																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519388	137519388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	72	322	0	ENST00000367739.4:c.1250G>A	p.Ser417Asn	p.S417N	ENST00000367739	NM_000416.2	417	aGc/aAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	13	478	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0031372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	25	704	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11316107	11316108	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	67	600	1	ENST00000361445.4:c.646dup	p.Cys216LeufsTer9	p.C216Lfs*9	ENST00000361445	NM_004958.3	216	tgt/tTgt																																																																															
PGR	5241	MSKCC	GRCh37	11	100996800	100996800	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	105	650	0	ENST00000325455.5:c.1727G>T	p.Gly576Val	p.G576V	ENST00000325455	NM_001202474.3	576	gGc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	75	584	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112127	115112127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	85	693	0	ENST00000257566.3:c.1613G>T	p.Gly538Val	p.G538V	ENST00000257566	NM_016569.3	538	gGc/gTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133254209	133254209	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	42	583	0	ENST00000320574.5:c.675T>A	p.Asp225Glu	p.D225E	ENST00000320574	NM_006231.2	225	gaT/gaA																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748404	43748404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	57	813	0	ENST00000382044.4:c.2402C>T	p.Pro801Leu	p.P801L	ENST00000382044	NM_001141980.1	801	cCa/cTa																																																																															
GATA2	2624	MSKCC	GRCh37	3	128199918	128199918	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	41	469	0	ENST00000341105.2:c.1387T>A	p.Ser463Thr	p.S463T	ENST00000341105	NM_032638.4	463	Tcc/Acc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679762	30679762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	61	599	0	ENST00000376406.3:c.1957G>A	p.Asp653Asn	p.D653N	ENST00000376406	NM_014641.2	653	Gac/Aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242488	55242488	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	76	595	0	ENST00000275493.2:c.2258C>A	p.Pro753Gln	p.P753Q	ENST00000275493	NM_005228.3	753	cCg/cAg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5064952	5064952	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	61	500	0	ENST00000381652.3:c.1126A>T	p.Thr376Ser	p.T376S	ENST00000381652	NM_004972.3	376	Act/Tct																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499745	8499745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	59	558	0	ENST00000356435.5:c.2224G>T	p.Gly742Cys	p.G742C	ENST00000356435		742	Ggc/Tgc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63409993	63409994	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0031373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	22	539	1	ENST00000330258.3:c.3173_3174delinsAA	p.Pro1058Gln	p.P1058Q	ENST00000330258	NM_152424.3	1058	cCC/cAA																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178622	56178622	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	104	310	0	ENST00000399503.3:c.3595C>T	p.Gln1199Ter	p.Q1199*	ENST00000399503	NM_005921.1	1199	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0031376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	159	483	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56180556	56180560	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAA	AAGAA	-			P-0031376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	82	446	0	ENST00000399503.3:c.3885_3889del	p.Arg1296AspfsTer11	p.R1296Dfs*11	ENST00000399503	NM_005921.1	1295	atAAGAAtg/attg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859583	151859599	+	frameshift_variant	Frame_Shift_Del	DEL	AGTTGCTTGTGAGAAAT	AGTTGCTTGTGAGAAAT	-			P-0031376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	142	507	0	ENST00000262189.6:c.11063_11079del	p.Asp3688AlafsTer31	p.D3688Afs*31	ENST00000262189	NM_170606.2	3688	gATTTCTCACAAGCAACT/g																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44820570	44820570	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	153	596	0	ENST00000377967.4:c.270del	p.Val91TrpfsTer9	p.V91Wfs*9	ENST00000377967	NM_021140.2	89	ggA/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0031378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	282	482	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0031378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	291	745	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296323	15296323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	239	761	3	ENST00000263388.2:c.2119G>A	p.Gly707Ser	p.G707S	ENST00000263388	NM_000435.2	707	Ggc/Agc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143029273	143029273	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	103	360	0	ENST00000262992.4:c.2347A>T	p.Ile783Leu	p.I783L	ENST00000262992	NM_001101669.1	783	Ata/Tta																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0031380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	385	511	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CBFB	865	MSKCC	GRCh37	16	67070577	67070577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	123	306	0	ENST00000412916.2:c.201G>T	p.Gln67His	p.Q67H	ENST00000412916		67	caG/caT																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591931	48591931	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	151	447	0	ENST00000342988.3:c.1094G>T	p.Gly365Val	p.G365V	ENST00000342988	NM_005359.5	365	gGt/gTt																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15827432	15827432	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	210	596	0	ENST00000307771.7:c.548T>A	p.Phe183Tyr	p.F183Y	ENST00000307771	NM_005089.3	183	tTt/tAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0031386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	158	557	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727451	66727451	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519729		P-0031386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	16	414	0	ENST00000307102.5:c.167A>C	p.Gln56Pro	p.Q56P	ENST00000307102	NM_002755.3	56	cAg/cCg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37649111	37649111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	60	413	0	ENST00000447079.4:c.2216G>A	p.Gly739Asp	p.G739D	ENST00000447079	NM_015083.1	739	gGc/gAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259441	55259442	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0031386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	120	420	1	ENST00000275493.2:c.2499_2500delinsTT	p.Leu833_Val834delinsPheLeu	p.L833_V834delinsFL	ENST00000275493	NM_005228.3	833	ttGGtg/ttTTtg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0031391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	172	609	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578509	7578510	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGTCTT			P-0031391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	213	944	0	ENST00000269305.4:c.415_420dup	p.Lys139_Thr140dup	p.K139_T140dup	ENST00000269305	NM_001126112.2	139	-/AAGACC																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061235	38061235	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	285	602	0	ENST00000250448.2:c.754A>C	p.Asn252His	p.N252H	ENST00000250448	NM_004496.3	252	Aac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	66	688	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0031394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	220	515	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593478	48593479	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0031394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	43	397	0	ENST00000342988.3:c.1231_1232del	p.Ser411LeufsTer17	p.S411Lfs*17	ENST00000342988	NM_005359.5	410	cAG/c																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445404	49445404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	112	872	1	ENST00000301067.7:c.2062C>T	p.Arg688Cys	p.R688C	ENST00000301067	NM_003482.3	688	Cgc/Tgc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67201881	67201881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146762475		P-0031394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	73	652	0	ENST00000312629.5:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000312629	NM_003952.2	361	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845153	151845154	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	49	534	0	ENST00000262189.6:c.13858dup	p.His4620ProfsTer2	p.H4620Pfs*2	ENST00000262189	NM_170606.2	4620	cat/cCat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039824	47039824	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	88	703	0	ENST00000329236.7:c.934del	p.Ala312ProfsTer95	p.A312Pfs*95	ENST00000329236	NM_001204466.1	311	atG/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	22	470	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579442	7579442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	37	713	0	ENST00000269305.4:c.245del	p.Pro82ArgfsTer41	p.P82Rfs*41	ENST00000269305	NM_001126112.2	82	cCg/cg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891173	101891173	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	31	351	0	ENST00000374994.4:c.134A>T	p.Asn45Ile	p.N45I	ENST00000374994	NM_004612.2	45	aAt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0031406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	310	560	0	ENST00000269305.4:c.560-2A>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	331	912	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156603	55156603	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200676118		P-0031407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	175	619	1	ENST00000257290.5:c.3004G>T	p.Asp1002Tyr	p.D1002Y	ENST00000257290	NM_006206.4	1002	Gac/Tac																																																																															
KDR	3791	MSKCC	GRCh37	4	55964316	55964316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	51	468	0	ENST00000263923.4:c.2497C>T	p.Arg833Trp	p.R833W	ENST00000263923	NM_002253.2	833	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112173627	112173627	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0031407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	73	410	0	ENST00000257430.4:c.2336T>G	p.Leu779Ter	p.L779*	ENST00000257430	NM_000038.5	779	tTa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	167	499	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0031409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	101	384	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	61	425	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0031413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	227	454	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0031413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	301	625	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732907	74732908	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	97	221	0	ENST00000359995.5:c.335dup	p.Gly113ArgfsTer11	p.G113Rfs*11	ENST00000359995	NM_001195427.1	112	ggc/ggGc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728602	190728602	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	121	575	0	ENST00000441310.2:c.1990C>T	p.Gln664Ter	p.Q664*	ENST00000441310	NM_000534.4	664	Cag/Tag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467919	66467919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	65	328	0	ENST00000273854.3:c.350G>T	p.Trp117Leu	p.W117L	ENST00000273854	NM_004439.5	117	tGg/tTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231375	5231375	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	82	738	0	ENST00000357368.4:c.2101G>C	p.Glu701Gln	p.E701Q	ENST00000357368	NM_002850.3	701	Gag/Cag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351737	89351737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	276	921	0	ENST00000301030.4:c.1213C>T	p.Arg405Cys	p.R405C	ENST00000301030	NM_001256183.1	405	Cgt/Tgt																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	51	473	0	ENST00000244661.2:c.220G>A	p.Glu74Lys	p.E74K	ENST00000244661	NM_003537.3	74	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579503	7579503	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	195	899	0	ENST00000269305.4:c.184G>T	p.Glu62Ter	p.E62*	ENST00000269305	NM_001126112.2	62	Gaa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101393	27101393	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	138	501	2	ENST00000324856.7:c.4675G>T	p.Ala1559Ser	p.A1559S	ENST00000324856	NM_006015.4	1559	Gcc/Tcc																																																																															
PGR	5241	MSKCC	GRCh37	11	100909912	100909912	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	54	446	0	ENST00000325455.5:c.2737A>T	p.Ile913Phe	p.I913F	ENST00000325455	NM_001202474.3	913	Att/Ttt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118392030	118392030	+	splice_acceptor_variant,non_coding_transcript_variant	Splice_Site	SNP	C	C	A			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	221	504	0	ENST00000554407.1:n.273-1G>T		p.X91_splice	ENST00000554407		91																																																																																
CBL	867	MSKCC	GRCh37	11	119156016	119156016	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	91	783	0	ENST00000264033.4:c.1681C>G	p.Gln561Glu	p.Q561E	ENST00000264033	NM_005188.3	561	Caa/Gaa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12006442	12006442	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	88	769	1	ENST00000396373.4:c.410G>C	p.Gly137Ala	p.G137A	ENST00000396373	NM_001987.4	137	gGa/gCa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443745	49443745	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	121	835	0	ENST00000301067.7:c.3626C>G	p.Ser1209Cys	p.S1209C	ENST00000301067	NM_003482.3	1209	tCt/tGt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913983	32913983	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	146	613	0	ENST00000380152.3:c.5491A>C	p.Ile1831Leu	p.I1831L	ENST00000380152		1831	Ata/Cta																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955223	17955223	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	205	860	0	ENST00000458235.1:c.4del	p.Ala2HisfsTer9	p.A2Hfs*9	ENST00000458235	NM_000215.3	2	Gca/ca																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	93	381	0	ENST00000397062.3:c.92G>T	p.Gly31Val	p.G31V	ENST00000397062	NM_006164.4	31	gGa/gTa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30682855	30682855	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	82	632	2	ENST00000376406.3:c.98G>T	p.Arg33Leu	p.R33L	ENST00000376406	NM_014641.2	33	cGg/cTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971060	21971071	+	inframe_deletion	In_Frame_Del	DEL	CCCGGTGCAGCA	CCCGGTGCAGCA	-			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	158	500	0	ENST00000304494.5:c.287_298del	p.Val96_Arg99del	p.V96_R99del	ENST00000304494	NM_000077.4	96	gTGCTGCACCGGGcc/gcc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0031426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	40	337	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
BRAF	673	MSKCC	GRCh37	7	140481403	140481403	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	416	528	0	ENST00000288602.6:c.1405G>C	p.Gly469Arg	p.G469R	ENST00000288602	NM_004333.4	469	Gga/Cga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153271198	153271198	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs202191840		P-0031426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	107	265	15	ENST00000281708.4:c.580A>G	p.Thr194Ala	p.T194A	ENST00000281708	NM_033632.3	194	Aca/Gca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836758	151836758	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0031426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	332	476	0	ENST00000262189.6:c.14460+2T>G		p.X4820_splice	ENST00000262189	NM_170606.2	4820																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	10032264	10032264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	13	444	0	ENST00000330684.3:c.559G>A	p.Val187Ile	p.V187I	ENST00000330684	NM_001134407.1	187	Gtc/Atc																																																																															
SDHB	6390	MSKCC	GRCh37	1	17350532	17350532	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	68	470	0	ENST00000375499.3:c.578G>C	p.Ser193Thr	p.S193T	ENST00000375499	NM_003000.2	193	aGc/aCc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245456	46245456	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	10	336	0	ENST00000334344.6:c.3550C>A	p.Pro1184Thr	p.P1184T	ENST00000334344	NM_152641.2	1184	Cct/Act																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117695830	117695830	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	10	448	0	ENST00000369458.3:c.607T>C	p.Ser203Pro	p.S203P	ENST00000369458	NM_024626.3	203	Tct/Cct																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245298	46245298	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	17	343	0	ENST00000334344.6:c.3392C>A	p.Pro1131Gln	p.P1131Q	ENST00000334344	NM_152641.2	1131	cCa/cAa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245315	46245315	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	12	338	0	ENST00000334344.6:c.3409T>A	p.Ser1137Thr	p.S1137T	ENST00000334344	NM_152641.2	1137	Tca/Aca																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246399	46246399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	10	313	0	ENST00000334344.6:c.4493C>T	p.Ala1498Val	p.A1498V	ENST00000334344	NM_152641.2	1498	gCc/gTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032277	10032277	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	12	433	0	ENST00000330684.3:c.546A>C	p.Glu182Asp	p.E182D	ENST00000330684	NM_001134407.1	182	gaA/gaC																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782171	56782171	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	11	252	0	ENST00000308159.5:c.12G>T	p.Glu4Asp	p.E4D	ENST00000308159	NM_014669.4	4	gaG/gaT																																																																															
NF1	4763	MSKCC	GRCh37	17	29553541	29553541	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	13	280	0	ENST00000358273.4:c.2090A>G	p.Asn697Ser	p.N697S	ENST00000358273	NM_001042492.2	697	aAc/aGc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682123	37682123	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	11	325	0	ENST00000447079.4:c.3314C>G	p.Ala1105Gly	p.A1105G	ENST00000447079	NM_015083.1	1105	gCt/gGt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52713609	52713609	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	10	363	0	ENST00000394830.3:c.119A>G	p.Asn40Ser	p.N40S	ENST00000394830	NM_018313.4	40	aAt/aGt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38173489	38173489	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	11	419	0	ENST00000317025.8:c.1927A>G	p.Thr643Ala	p.T643A	ENST00000317025	NM_023034.1	643	Act/Gct																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101867495	101867495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	14	42	0	ENST00000374994.4:c.8C>T	p.Ala3Val	p.A3V	ENST00000374994	NM_004612.2	3	gCg/gTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70361142	70361142	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	18	245	0	ENST00000374080.3:c.6330A>C	p.Gln2110His	p.Q2110H	ENST00000374080		2110	caA/caC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0031439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	236	306	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579410	7579410	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	264	617	0	ENST00000269305.4:c.277del	p.Leu93CysfsTer30	p.L93Cfs*30	ENST00000269305	NM_001126112.2	93	Ctg/tg																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123505237	123505237	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	169	262	0	ENST00000371139.4:c.383C>A	p.Pro128Gln	p.P128Q	ENST00000371139	NM_001114937.2	128	cCa/cAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118359437	118359437	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	159	306	0	ENST00000534358.1:c.4441T>A	p.Phe1481Ile	p.F1481I	ENST00000534358	NM_005933.3	1481	Ttc/Atc																																																																															
NF1	4763	MSKCC	GRCh37	17	29585498	29585498	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	19	182	0	ENST00000358273.4:c.4313del	p.Gly1438AlafsTer2	p.G1438Afs*2	ENST00000358273	NM_001042492.2	1437	aGg/ag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0031441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	68	277	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155721	56155722	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0031441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	58	355	0	ENST00000399503.3:c.816_817del	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	271	agAAaa/agaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177920	56177920	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	116	409	1	ENST00000399503.3:c.2893C>T	p.Gln965Ter	p.Q965*	ENST00000399503	NM_005921.1	965	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1207088	1207088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	115	602	1	ENST00000326873.7:c.176C>T	p.Ser59Phe	p.S59F	ENST00000326873	NM_000455.4	59	tCt/tTt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609467	81609467	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	36	439	0	ENST00000298171.2:c.1065C>A	p.Phe355Leu	p.F355L	ENST00000298171	NM_000369.2	355	ttC/ttA																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143043375	143043375	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	56	336	0	ENST00000262992.4:c.2041G>T	p.Asp681Tyr	p.D681Y	ENST00000262992	NM_001101669.1	681	Gac/Tac																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845360	42845360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	78	531	0	ENST00000398585.3:c.902C>T	p.Pro301Leu	p.P301L	ENST00000398585	NM_001135099.1	301	cCg/cTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55211157	55211157	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	142	470	0	ENST00000275493.2:c.400G>T	p.Glu134Ter	p.E134*	ENST00000275493	NM_005228.3	134	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	138	533	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
EPHA7	2045	MSKCC	GRCh37	6	93979269	93979269	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	41	392	0	ENST00000369303.4:c.1559C>A	p.Ala520Asp	p.A520D	ENST00000369303	NM_004440.3	520	gCt/gAt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430160	181430160	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	17	121	0	ENST00000325404.1:c.12G>T	p.Met4Ile	p.M4I	ENST00000325404	NM_003106.3	4	atG/atT																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576121	88576121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	60	573	0	ENST00000360948.2:c.1552C>A	p.Arg518Ser	p.R518S	ENST00000360948	NM_001012338.2	518	Cgt/Agt																																																																															
SMO	6608	MSKCC	GRCh37	7	128850951	128850951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	43	403	0	ENST00000249373.3:c.1798G>A	p.Val600Met	p.V600M	ENST00000249373	NM_005631.4	600	Gtg/Atg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188548	11188548	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	41	427	0	ENST00000361445.4:c.5873A>T	p.His1958Leu	p.H1958L	ENST00000361445	NM_004958.3	1958	cAc/cTc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468261	120468261	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	44	519	0	ENST00000256646.2:c.4178G>C	p.Arg1393Pro	p.R1393P	ENST00000256646	NM_024408.3	1393	cGc/cCc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206653396	206653396	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	63	563	0	ENST00000367120.3:c.1280G>T	p.Arg427Leu	p.R427L	ENST00000367120	NM_014002.3	427	cGg/cTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70333188	70333188	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	109	570	2	ENST00000373644.4:c.1093C>A	p.Leu365Ile	p.L365I	ENST00000373644	NM_030625.2	365	Cta/Ata																																																																															
TET1	80312	MSKCC	GRCh37	10	70333822	70333822	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	65	419	0	ENST00000373644.4:c.1727A>T	p.Tyr576Phe	p.Y576F	ENST00000373644	NM_030625.2	576	tAt/tTt																																																																															
WT1	7490	MSKCC	GRCh37	11	32410674	32410674	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	41	379	0	ENST00000332351.3:c.1484G>C	p.Arg495Pro	p.R495P	ENST00000332351	NM_024426.4	495	cGg/cCg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998657	100998657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	48	638	0	ENST00000325455.5:c.1145del	p.Pro382ArgfsTer4	p.P382Rfs*4	ENST00000325455	NM_001202474.3	382	cCg/cg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999032	100999032	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	34	538	0	ENST00000325455.5:c.770C>G	p.Pro257Arg	p.P257R	ENST00000325455	NM_001202474.3	257	cCg/cGg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	438196	438196	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	26	286	0	ENST00000399788.2:c.1774-1G>A		p.X592_splice	ENST00000399788	NM_001042603.1	592																																																																																
ARID2	196528	MSKCC	GRCh37	12	46244309	46244310	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	73	405	0	ENST00000334344.6:c.2406dup	p.Gly803TrpfsTer38	p.G803Wfs*38	ENST00000334344	NM_152641.2	801	-/T																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433541	49433541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	129	752	1	ENST00000301067.7:c.8012G>A	p.Gly2671Asp	p.G2671D	ENST00000301067	NM_003482.3	2671	gGc/gAc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112939999	112939999	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	50	435	0	ENST00000351677.2:c.1651G>T	p.Asp551Tyr	p.D551Y	ENST00000351677	NM_002834.3	551	Gac/Tac																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434381	121434381	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	97	591	0	ENST00000257555.6:c.1145C>G	p.Thr382Ser	p.T382S	ENST00000257555		382	aCc/aGc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100220	30100220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	40	357	0	ENST00000331968.5:c.1400C>A	p.Pro467His	p.P467H	ENST00000331968	NM_002742.2	467	cCt/cAt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061532	38061532	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	25	270	0	ENST00000250448.2:c.457G>T	p.Ala153Ser	p.A153S	ENST00000250448	NM_004496.3	153	Gcg/Tcg																																																																															
MGA	23269	MSKCC	GRCh37	15	42058261	42058261	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	36	331	0	ENST00000219905.7:c.7981G>T	p.Gly2661Ter	p.G2661*	ENST00000219905	NM_001164273.1	2661	Gga/Tga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472534	88472534	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	34	530	0	ENST00000360948.2:c.2021A>T	p.His674Leu	p.H674L	ENST00000360948	NM_001012338.2	674	cAc/cTc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678566	88678566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	19	314	0	ENST00000360948.2:c.970G>T	p.Val324Leu	p.V324L	ENST00000360948	NM_001012338.2	324	Gtg/Ttg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50811781	50811781	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	100	480	0	ENST00000398568.2:c.1058A>G	p.Tyr353Cys	p.Y353C	ENST00000398568	NM_001042412.1	353	tAt/tGt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89862370	89862370	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	63	537	0	ENST00000389301.3:c.950A>G	p.Lys317Arg	p.K317R	ENST00000389301	NM_000135.2	317	aAg/aGg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89862409	89862409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	52	486	0	ENST00000389301.3:c.911G>T	p.Gly304Val	p.G304V	ENST00000389301	NM_000135.2	304	gGa/gTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29527523	29527523	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	81	512	0	ENST00000358273.4:c.972T>G	p.Cys324Trp	p.C324W	ENST00000358273	NM_001042492.2	324	tgT/tgG																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40354443	40354443	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	183	650	0	ENST00000293328.3:c.2152G>T	p.Ala718Ser	p.A718S	ENST00000293328	NM_012448.3	718	Gcc/Tcc																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56780679	56780679	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	60	427	0	ENST00000337432.4:c.694G>T	p.Glu232Ter	p.E232*	ENST00000337432	NM_058216.2	232	Gaa/Taa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120356	70120356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	251	744	0	ENST00000245479.2:c.1358G>A	p.Ser453Asn	p.S453N	ENST00000245479	NM_000346.3	453	aGc/aAc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18971160	18971160	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	137	651	0	ENST00000262803.5:c.2213A>T	p.Gln738Leu	p.Q738L	ENST00000262803	NM_002911.3	738	cAg/cTg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867535	45867535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	125	672	0	ENST00000391945.4:c.773G>T	p.Arg258Leu	p.R258L	ENST00000391945	NM_000400.3	258	cGg/cTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25991682	25991682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	38	368	0	ENST00000435504.4:c.560C>A	p.Ser187Tyr	p.S187Y	ENST00000435504		187	tCc/tAc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190717379	190717379	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	52	288	0	ENST00000441310.2:c.700-2A>T		p.X234_splice	ENST00000441310	NM_000534.4	234																																																																																
DNMT3B	1789	MSKCC	GRCh37	20	31384614	31384614	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	65	540	0	ENST00000328111.2:c.1316G>T	p.Gly439Val	p.G439V	ENST00000328111	NM_006892.3	439	gGc/gTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306735	41306735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	23	422	0	ENST00000373198.4:c.924G>T	p.Lys308Asn	p.K308N	ENST00000373198	NM_133170.3	308	aaG/aaT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41408860	41408860	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	28	407	0	ENST00000373198.4:c.566G>T	p.Cys189Phe	p.C189F	ENST00000373198	NM_133170.3	189	tGc/tTc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845358	42845360	+	frameshift_variant	Frame_Shift_Del	DEL	CCG	CCG	AA			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	78	538	1	ENST00000398585.3:c.902_904delinsTT	p.Pro301LeufsTer29	p.P301Lfs*29	ENST00000398585	NM_001135099.1	301	cCGGgg/cTTgg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434218	12434218	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	37	417	0	ENST00000287820.6:c.586C>A	p.Gln196Lys	p.Q196K	ENST00000287820	NM_015869.4	196	Cag/Aag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125873	47125873	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	35	127	0	ENST00000409792.3:c.5398-1G>T		p.X1800_splice	ENST00000409792	NM_014159.6	1800																																																																																
SHQ1	55164	MSKCC	GRCh37	3	72891443	72891443	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	37	387	0	ENST00000325599.8:c.319G>C	p.Val107Leu	p.V107L	ENST00000325599	NM_018130.2	107	Gtg/Ctg																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73113233	73113233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	31	156	1	ENST00000356692.5:c.574G>T	p.Gly192Trp	p.G192W	ENST00000356692		192	Ggg/Tgg																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114261	73114261	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	26	276	0	ENST00000356692.5:c.897G>C	p.Glu299Asp	p.E299D	ENST00000356692		299	gaG/gaC																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480480	89480480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	44	284	0	ENST00000336596.2:c.2317G>T	p.Asp773Tyr	p.D773Y	ENST00000336596	NM_005233.5	773	Gat/Tat																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499331	89499331	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	28	297	0	ENST00000336596.2:c.2501T>G	p.Ile834Ser	p.I834S	ENST00000336596	NM_005233.5	834	aTt/aGt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521612	89521612	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	33	286	0	ENST00000336596.2:c.2691-2A>T		p.X897_splice	ENST00000336596	NM_005233.5	897																																																																																
FOXL2	668	MSKCC	GRCh37	3	138665527	138665527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	93	465	0	ENST00000330315.3:c.38G>T	p.Gly13Val	p.G13V	ENST00000330315	NM_023067.3	13	gGg/gTg																																																																															
ATR	545	MSKCC	GRCh37	3	142274718	142274718	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	48	275	0	ENST00000350721.4:c.2341+1G>T		p.X781_splice	ENST00000350721	NM_001184.3	781																																																																																
PRKCI	5584	MSKCC	GRCh37	3	170020887	170020887	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	22	154	0	ENST00000295797.4:c.1763T>C	p.Leu588Pro	p.L588P	ENST00000295797	NM_002740.5	588	cTt/cCt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430227	181430229	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	23	324	0	ENST00000325404.1:c.87_89del	p.Ala30del	p.A30del	ENST00000325404	NM_003106.3	27	GCG/-																																																																															
TP63	8626	MSKCC	GRCh37	3	189587170	189587170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	47	401	0	ENST00000264731.3:c.1187C>T	p.Pro396Leu	p.P396L	ENST00000264731	NM_003722.4	396	cCa/cTa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197750	66197751	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	37	423	0	ENST00000273854.3:c.2948_2949del	p.Thr983ArgfsTer65	p.T983Rfs*65	ENST00000273854	NM_004439.5	983	aCA/a																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356143	66356143	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	35	398	1	ENST00000273854.3:c.1354C>A	p.Pro452Thr	p.P452T	ENST00000273854	NM_004439.5	452	Cca/Aca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518876	187518876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	65	483	0	ENST00000441802.2:c.12328G>T	p.Gly4110Cys	p.G4110C	ENST00000441802	NM_005245.3	4110	Ggc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541193	187541193	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	52	291	0	ENST00000441802.2:c.6547G>T	p.Glu2183Ter	p.E2183*	ENST00000441802	NM_005245.3	2183	Gaa/Taa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295322	1295322	+	upstream_gene_variant	5'Flank	DEL	G	G	-			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	121	429	0				ENST00000310581	NM_198253.2																																																																																	
IL7R	3575	MSKCC	GRCh37	5	35871314	35871314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs200751605		P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	62	338	2	ENST00000303115.3:c.536C>A	p.Thr179Lys	p.T179K	ENST00000303115	NM_002185.3	179	aCg/aAg																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225392	26225392	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	17	226	0	ENST00000360408.1:c.10A>T	p.Thr4Ser	p.T4S	ENST00000360408	NM_003532.2	4	Act/Tct																																																																															
EZH2	2146	MSKCC	GRCh37	7	148515129	148515129	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	80	349	0	ENST00000320356.2:c.1080A>T	p.Arg360Ser	p.R360S	ENST00000320356	NM_004456.4	360	agA/agT																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38279318	38279319	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	47	621	0	ENST00000425967.3:c.1170_1171delinsTT	p.Glu391Ter	p.E391*	ENST00000425967	NM_001174067.1	390	ctGGaa/ctTTaa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981662	70981662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	76	753	0	ENST00000276594.2:c.434G>T	p.Gly145Val	p.G145V	ENST00000276594	NM_024504.3	145	gGa/gTa																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5549569	5549569	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	126	554	0	ENST00000397747.3:c.596T>A	p.Val199Glu	p.V199E	ENST00000397747	NM_025239.3	199	gTg/gAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340441	8340441	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	113	331	0	ENST00000356435.5:c.5155G>T	p.Gly1719Trp	p.G1719W	ENST00000356435		1719	Ggg/Tgg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484156	8484156	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	57	435	0	ENST00000356435.5:c.3376G>T	p.Val1126Leu	p.V1126L	ENST00000356435		1126	Gtg/Ttg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499690	8499690	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	134	401	0	ENST00000356435.5:c.2279A>T	p.Lys760Met	p.K760M	ENST00000356435		760	aAg/aTg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101895023	101895023	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	58	203	0	ENST00000374994.4:c.574+2T>A		p.X192_splice	ENST00000374994	NM_004612.2	192																																																																																
ABL1	25	MSKCC	GRCh37	9	133760285	133760285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	133	456	0	ENST00000318560.5:c.2608G>A	p.Ala870Thr	p.A870T	ENST00000318560	NM_005157.4	870	Gcc/Acc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390837	139390837	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	122	670	1	ENST00000277541.6:c.7354G>T	p.Ala2452Ser	p.A2452S	ENST00000277541	NM_017617.3	2452	Gcg/Tcg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402562	139402562	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	153	604	0	ENST00000277541.6:c.3355G>T	p.Gly1119Ter	p.G1119*	ENST00000277541	NM_017617.3	1119	Gga/Tga																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139438502	139438502	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	204	663	0	ENST00000277541.6:c.114A>T	p.Glu38Asp	p.E38D	ENST00000277541	NM_017617.3	38	gaA/gaT																																																																															
MED12	9968	MSKCC	GRCh37	X	70353052	70353052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	45	229	0	ENST00000374080.3:c.4607G>T	p.Arg1536Leu	p.R1536L	ENST00000374080		1536	cGg/cTg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845355	42845355	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	75	542	0	ENST00000398585.3:c.907del	p.Ala303ProfsTer27	p.A303Pfs*27	ENST00000398585	NM_001135099.1	303	Gcc/cc																																																																															
PPARG	5468	MSKCC	GRCh37	3	12475459	12475464	+	missense_variant	Missense_Mutation	ONP	CTGGAG	CTGGAG	ATGGAC			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	66	552	0	ENST00000287820.6:c.1333_1338delinsATGGAC	p.Leu445_Glu446delinsMetAsp	p.L445_E446delinsMD	ENST00000287820	NM_015869.4	445	CTGGAG/ATGGAC																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495375	56495377	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0031450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	83	568	0	ENST00000267101.3:c.3573_3575del	p.Glu1191del	p.E1191del	ENST00000267101	NM_001982.3	1189	GAA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0031450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	203	672	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435581	56435581	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200166143		P-0031450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	206	665	0	ENST00000407977.2:c.1556G>A	p.Arg519Gln	p.R519Q	ENST00000407977		519	cGa/cAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713485	40713485	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0031450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	52	553	0	ENST00000373198.4:c.4030C>T	p.Pro1344Ser	p.P1344S	ENST00000373198	NM_133170.3	1344	Cca/Tca																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189873	66189873	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	47	386	0	ENST00000273854.3:c.3073G>T	p.Glu1025Ter	p.E1025*	ENST00000273854	NM_004439.5	1025	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175488	112175488	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	60	310	0	ENST00000257430.4:c.4198del	p.Ser1400ArgfsTer15	p.S1400Rfs*15	ENST00000257430	NM_000038.5	1399	cgT/cg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70982002	70982002	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	170	771	0	ENST00000276594.2:c.94C>A	p.Pro32Thr	p.P32T	ENST00000276594	NM_024504.3	32	Cct/Act																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400978	139400978	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0031450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	63	481	0	ENST00000277541.6:c.4014+1G>A		p.X1338_splice	ENST00000277541	NM_017617.3	1338																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	118	371	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579585	7579591	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GGGGGAC	GGGGGAC	TGGGAA			P-0031453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	74	458	1	ENST00000269305.4:c.97-1_102delinsTTCCCA		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
RNF43	54894	MSKCC	GRCh37	17	56492730	56492730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	13	465	1	ENST00000407977.2:c.209C>T	p.Ala70Val	p.A70V	ENST00000407977		70	gCt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584825	48584825	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0031453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	61	240	0	ENST00000342988.3:c.903C>A	p.Tyr301Ter	p.Y301*	ENST00000342988	NM_005359.5	301	taC/taA																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170039	32170052	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGCATCGCAGGC	CCAGCATCGCAGGC	-			P-0031453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	106	675	0	ENST00000375023.3:c.3556_3569del	p.Ala1186LeufsTer44	p.A1186Lfs*44	ENST00000375023	NM_004557.3	1186	GCCTGCGATGCTGGc/c																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0031470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			541	98	615	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0031470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			642	123	640	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
MED12	9968	MSKCC	GRCh37	X	70360630	70360630	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			266	50	280	0	ENST00000374080.3:c.6190C>T	p.Gln2064Ter	p.Q2064*	ENST00000374080		2064	Cag/Tag																																																																															
TSHR	7253	MSKCC	GRCh37	14	81554374	81554374	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0031470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			299	24	349	0	ENST00000298171.2:c.392+2T>A		p.X131_splice	ENST00000298171	NM_000369.2	131																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81925134	81925134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			622	65	553	0	ENST00000359376.3:c.925G>A	p.Val309Met	p.V309M	ENST00000359376	NM_002661.3	309	Gtg/Atg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42860329	42860329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			715	52	526	0	ENST00000398585.3:c.548A>G	p.Asn183Ser	p.N183S	ENST00000398585	NM_001135099.1	183	aAt/aGt																																																																															
SDHA	6389	MSKCC	GRCh37	5	235281	235281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			472	26	409	0	ENST00000264932.6:c.1087C>T	p.His363Tyr	p.H363Y	ENST00000264932	NM_004168.2	363	Cac/Tac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039288	47039288	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			581	120	774	0	ENST00000329236.7:c.680T>C	p.Leu227Ser	p.L227S	ENST00000329236	NM_001204466.1	227	tTg/tCg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039297	47039297	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			600	125	799	0	ENST00000329236.7:c.689T>G	p.Leu230Arg	p.L230R	ENST00000329236	NM_001204466.1	230	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0031477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	239	594	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117388	115117389	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTACA			P-0031477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	145	450	0	ENST00000257566.3:c.785_786insTGTAA	p.Lys262AsnfsTer22	p.K262Nfs*22	ENST00000257566	NM_016569.3	262	aaa/aaTGTAAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	92	466	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
AR	367	MSKCC	GRCh37	X	66766412	66766412	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200390780		P-0031482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	33	128	0	ENST00000374690.3:c.1424C>T	p.Ala475Val	p.A475V	ENST00000374690	NM_000044.3	475	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	106	360	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0031482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	45	475	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717717	89717717	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	110	440	0	ENST00000371953.3:c.743del	p.Pro248LeufsTer8	p.P248Lfs*8	ENST00000371953	NM_000314.4	248	Cct/ct																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112891120	112891120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	114	652	0	ENST00000351677.2:c.454C>T	p.Arg152Cys	p.R152C	ENST00000351677	NM_002834.3	152	Cgc/Tgc																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99823087	99823087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	46	332	0	ENST00000280892.6:c.125C>T	p.Thr42Met	p.T42M	ENST00000280892	NM_001130678.1	42	aCg/aTg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101904941	101904941	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	87	406	0	ENST00000374994.4:c.929C>A	p.Ala310Glu	p.A310E	ENST00000374994	NM_004612.2	310	gCg/gAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	106	487	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	121	285	0				ENST00000310581	NM_198253.2																																																																																	
DOT1L	84444	MSKCC	GRCh37	19	2185868	2185868	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	185	693	0	ENST00000398665.3:c.140A>T	p.Glu47Val	p.E47V	ENST00000398665	NM_032482.2	47	gAa/gTa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270593	98270595	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0031487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	10	34	0	ENST00000331920.6:c.49_51delGGC	p.Gly17del	p.G17del	ENST00000331920	NM_000264.3	17	GGC/-																																																																															
APC	324	MSKCC	GRCh37	5	112175772	112175772	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	59	330	0	ENST00000257430.4:c.4483del	p.Ser1495ValfsTer12	p.S1495Vfs*12	ENST00000257430	NM_000038.5	1494	gAa/ga																																																																															
ATM	472	MSKCC	GRCh37	11	108186757	108186757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	108	511	0	ENST00000278616.4:c.6115G>A	p.Glu2039Lys	p.E2039K	ENST00000278616	NM_000051.3	2039	Gaa/Aaa																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241912	72241912	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	22	429	0	ENST00000357731.5:c.478T>A	p.Cys160Ser	p.C160S	ENST00000357731	NM_173808.2	160	Tgt/Agt																																																																															
ATM	472	MSKCC	GRCh37	11	108106562	108106562	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0031487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	44	345	0	ENST00000278616.4:c.496+1G>T		p.X166_splice	ENST00000278616	NM_000051.3	166																																																																																
RAD51B	5890	MSKCC	GRCh37	14	68331719	68331719	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0031487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	10	106	0	ENST00000487270.1:c.316-1G>C		p.X106_splice	ENST00000487270	NM_133509.3	106																																																																																
APC	324	MSKCC	GRCh37	5	112174215	112174218	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0031487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	38	455	0	ENST00000257430.4:c.2925_2928del	p.Arg976ValfsTer3	p.R976Vfs*3	ENST00000257430	NM_000038.5	975	aAAAGa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0031491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	89	573	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112174922	112174923	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTCT			P-0031491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	17	301	0	ENST00000257430.4:c.3633_3637dup	p.Ser1213CysfsTer54	p.S1213Cfs*54	ENST00000257430	NM_000038.5	1211	atg/aTGTCTtg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026099	71026099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	43	387	0	ENST00000318789.4:c.1523C>T	p.Thr508Met	p.T508M	ENST00000318789	NM_032682.5	508	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	102	791	3	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727451	66727468	+	protein_altering_variant	In_Frame_Del	DEL	AGAAGCAGAAGGTGGGAG	AGAAGCAGAAGGTGGGAG	GAA			P-0031492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	44	556	1	ENST00000307102.5:c.167_184delinsGAA	p.Gln56_Glu62delinsArgLys	p.Q56_E62delinsRK	ENST00000307102	NM_002755.3	56	cAGAAGCAGAAGGTGGGAGaa/cGAAaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	149	497	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0031508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	108	363	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0031508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	348	661	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
SESN3	143686	MSKCC	GRCh37	11	94923096	94923096	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	47	497	0	ENST00000536441.1:c.372A>C	p.Leu124Phe	p.L124F	ENST00000536441	NM_144665.3	124	ttA/ttC																																																																															
BIRC3	330	MSKCC	GRCh37	11	102198829	102198829	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141069802		P-0031508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	118	415	0	ENST00000263464.3:c.1000G>A	p.Val334Ile	p.V334I	ENST00000263464	NM_001165.4	334	Gtt/Att																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481622	56481622	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	172	628	3	ENST00000267101.3:c.657T>A	p.Phe219Leu	p.F219L	ENST00000267101	NM_001982.3	219	ttT/ttA																																																																															
CASP8	841	MSKCC	GRCh37	2	202149794	202149794	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	157	553	0	ENST00000358485.4:c.1235A>T	p.Lys412Ile	p.K412I	ENST00000358485	NM_001080125.1	412	aAa/aTa																																																																															
AR	367	MSKCC	GRCh37	X	66765979	66765979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	228	769	0	ENST00000374690.3:c.991G>A	p.Ala331Thr	p.A331T	ENST00000374690	NM_000044.3	331	Gct/Act																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302845	15302845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	173	766	0	ENST00000263388.2:c.605C>T	p.Ala202Val	p.A202V	ENST00000263388	NM_000435.2	202	gCa/gTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0031517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	48	257	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710664	114710665	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0031517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	103	542	0	ENST00000543371.1:c.149_150del	p.Asn50ArgfsTer46	p.N50Rfs*46	ENST00000543371	NM_001198531.1	50	aAT/a																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436023	49436037	+	inframe_deletion	In_Frame_Del	DEL	GGTTGTGGGGGTGGA	GGTTGTGGGGGTGGA	-			P-0031517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	67	561	0	ENST00000301067.7:c.5944_5958del	p.Ser1982_Thr1986del	p.S1982_T1986del	ENST00000301067	NM_003482.3	1982	TCCACCCCCACAACC/-																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206770	36206774	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGC	TGGGC	-			P-0031517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	140	688	0	ENST00000300305.3:c.738_742del	p.Asn248SerfsTer11	p.N248Sfs*11	ENST00000300305		246	acGCCCAac/acac																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0031522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	115	416	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	119	623	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636948	176636948	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	100	611	0	ENST00000439151.2:c.1548A>G	p.Ile516Met	p.I516M	ENST00000439151	NM_022455.4	516	atA/atG																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56477655	56477655	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142735651		P-0031522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	129	572	5	ENST00000267101.3:c.203C>T	p.Thr68Met	p.T68M	ENST00000267101	NM_001982.3	68	aCg/aTg																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025927	1025927	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	117	580	0	ENST00000358495.3:c.603G>T	p.Glu201Asp	p.E201D	ENST00000358495	NM_134424.2	201	gaG/gaT																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438233	56438233	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	121	597	0	ENST00000407977.2:c.760C>T	p.Gln254Ter	p.Q254*	ENST00000407977		254	Cag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101074	41101074	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	82	612	0	ENST00000373198.4:c.1282T>C	p.Tyr428His	p.Y428H	ENST00000373198	NM_133170.3	428	Tat/Cat																																																																															
FLT4	2324	MSKCC	GRCh37	5	180041122	180041122	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	148	933	0	ENST00000261937.6:c.3277A>T	p.Thr1093Ser	p.T1093S	ENST00000261937	NM_182925.4	1093	Acg/Tcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	105	442	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79965965	79965965	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	100	593	0	ENST00000265081.6:c.629A>C	p.His210Pro	p.H210P	ENST00000265081	NM_002439.4	210	cAt/cCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	158	411	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	36	328	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112157650	112157650	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	108	411	0	ENST00000257430.4:c.1370C>A	p.Ser457Ter	p.S457*	ENST00000257430	NM_000038.5	457	tCa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0031527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	90	246	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057520007		P-0031527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	338	687	0	ENST00000269305.4:c.614A>T	p.Tyr205Phe	p.Y205F	ENST00000269305	NM_001126112.2	205	tAt/tTt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528972	157528972	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	73	384	0	ENST00000346085.5:c.6697T>A	p.Ser2233Thr	p.S2233T	ENST00000346085	NM_020732.3	2233	Tct/Act																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	73	595	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0031528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	109	556	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	103	452	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	131	709	3	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123789	11123789	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0031531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	66	420	0	ENST00000344626.4:c.2438+1G>A		p.X813_splice	ENST00000344626	NM_003072.3	813																																																																																
CDC73	79577	MSKCC	GRCh37	1	193111048	193111048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	196	286	3	ENST00000367435.3:c.581G>T	p.Arg194Ile	p.R194I	ENST00000367435	NM_024529.4	194	aGa/aTa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111467	8111467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	110	490	1	ENST00000346208.3:c.953C>T	p.Ala318Val	p.A318V	ENST00000346208		318	gCg/gTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827327	72827327	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	124	594	2	ENST00000268489.5:c.9254A>T	p.Lys3085Ile	p.K3085I	ENST00000268489	NM_006885.3	3085	aAa/aTa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492917	56492917	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	94	207	0	ENST00000407977.2:c.22C>T	p.Gln8Ter	p.Q8*	ENST00000407977		8	Cag/Tag																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740710	58740710	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	128	599	0	ENST00000305921.3:c.1615G>C	p.Glu539Gln	p.E539Q	ENST00000305921	NM_003620.3	539	Gaa/Caa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902283	50902283	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	113	771	0	ENST00000440232.2:c.175C>T	p.Gln59Ter	p.Q59*	ENST00000440232	NM_002691.3	59	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0031532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	335	679	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246509	41246509	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	169	600	0	ENST00000357654.3:c.1039del	p.Leu347CysfsTer27	p.L347Cfs*27	ENST00000357654	NM_007294.3	347	Ctg/tg																																																																															
MET	4233	MSKCC	GRCh37	7	116339776	116339776	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367722737		P-0031532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	79	391	0	ENST00000397752.3:c.638C>T	p.Ser213Leu	p.S213L	ENST00000397752	NM_000245.2	213	tCg/tTg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775936	9775936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	107	612	2	ENST00000377346.4:c.400C>A	p.Pro134Thr	p.P134T	ENST00000377346	NM_005026.3	134	Cca/Aca																																																																															
TET1	80312	MSKCC	GRCh37	10	70405437	70405437	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	93	675	0	ENST00000373644.4:c.2951C>G	p.Ser984Ter	p.S984*	ENST00000373644	NM_030625.2	984	tCa/tGa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435978	110435978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	106	616	0	ENST00000375856.3:c.2423G>A	p.Arg808His	p.R808H	ENST00000375856	NM_003749.2	808	cGc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820767	3820767	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	303	813	0	ENST00000262367.5:c.2684C>G	p.Ser895Cys	p.S895C	ENST00000262367	NM_004380.2	895	tCc/tGc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753855	42753855	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	132	757	0	ENST00000222329.4:c.409T>C	p.Ser137Pro	p.S137P	ENST00000222329	NM_006494.2	137	Tcg/Ccg																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873420	136873431	+	inframe_deletion	In_Frame_Del	DEL	TTCCTTCATGGA	TTCCTTCATGGA	-			P-0031532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	54	407	0	ENST00000241393.3:c.67_78del	p.Ser23_Glu26del	p.S23_E26del	ENST00000241393	NM_003467.2	23	TCCATGAAGGAA/-																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911424	134911424	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	61	433	0	ENST00000398015.3:c.1889T>A	p.Phe630Tyr	p.F630Y	ENST00000398015	NM_004441.4	630	tTt/tAt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430402	181430402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	99	547	0	ENST00000325404.1:c.254C>G	p.Thr85Arg	p.T85R	ENST00000325404	NM_003106.3	85	aCg/aGg																																																																															
SMO	6608	MSKCC	GRCh37	7	128850224	128850224	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	94	561	0	ENST00000249373.3:c.1487T>A	p.Ile496Asn	p.I496N	ENST00000249373	NM_005631.4	496	aTc/aAc																																																																															
NBN	4683	MSKCC	GRCh37	8	90965645	90965645	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	68	419	0	ENST00000265433.3:c.1672A>C	p.Ile558Leu	p.I558L	ENST00000265433	NM_002485.4	558	Ata/Cta																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933926	39933926	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	303	686	0	ENST00000378444.4:c.673C>T	p.Gln225Ter	p.Q225*	ENST00000378444	NM_001123385.1	225	Cag/Tag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10249278	10249278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	20	423	0	ENST00000340748.4:c.3904G>A	p.Gly1302Ser	p.G1302S	ENST00000340748		1302	Ggt/Agt																																																																															
ERG	2078	MSKCC	GRCh37	21	39755493	39755494	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGGCGTGATAGGAGCCCATGTACGGGAGGTCTGAGGGGTA			P-0031536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	40	495	0	ENST00000288319.7:c.1231_1271dup	p.Pro425ThrfsTer18	p.P425Tfs*18	ENST00000288319	NM_182918.3	424	cac/caTACCCCTCAGACCTCCCGTACATGGGCTCCTATCACGCCCAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	188	578	0	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0031537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	92	470	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610503	81610503	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137908024		P-0031537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	91	409	0	ENST00000298171.2:c.2101C>T	p.Arg701Cys	p.R701C	ENST00000298171	NM_000369.2	701	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175217	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	47	253	0	ENST00000257430.4:c.3929dup	p.Ile1311AspfsTer4	p.I1311Dfs*4	ENST00000257430	NM_000038.5	1309	gaa/gAaa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520747	176520747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	114	464	0	ENST00000292408.4:c.1490C>A	p.Ala497Asp	p.A497D	ENST00000292408	NM_213647.1	497	gCc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0031538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	241	655	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175417	112175418	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0031538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	113	297	0	ENST00000257430.4:c.4127_4128delAT	p.Tyr1376CysfsTer9	p.Y1376Cfs*9	ENST00000257430	NM_000038.5	1376	TAt/t																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0031538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	108	413	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713383	40713383	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	335	557	1	ENST00000373198.4:c.4132C>T	p.Arg1378Ter	p.R1378*	ENST00000373198	NM_133170.3	1378	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711903	89711904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	126	496	0	ENST00000371953.3:c.522dup	p.Val175CysfsTer5	p.V175Cfs*5	ENST00000371953	NM_000314.4	174	tat/taTt																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811751	102811751	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	53	629	0	ENST00000307046.8:c.433A>C	p.Lys145Gln	p.K145Q	ENST00000307046	NM_001111285.1	145	Aag/Cag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056285	180056285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	199	636	2	ENST00000261937.6:c.959G>A	p.Arg320Gln	p.R320Q	ENST00000261937	NM_182925.4	320	cGg/cAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8471043	8471043	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	101	384	0	ENST00000356435.5:c.3456del	p.Lys1153AsnfsTer14	p.K1153Nfs*14	ENST00000356435		1152	ggG/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0031014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	85	412	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
RB1	5925	MSKCC	GRCh37	13	48919331	48919331	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	41	104	0	ENST00000267163.4:c.496G>T	p.Glu166Ter	p.E166*	ENST00000267163	NM_000321.2	166	Gaa/Taa																																																																															
STK11	6794	MSKCC	GRCh37	19	1221229	1221229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	207	638	0	ENST00000326873.7:c.752G>A	p.Gly251Asp	p.G251D	ENST00000326873	NM_000455.4	251	gGt/gAt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28623821	28623821	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	101	469	0	ENST00000241453.7:c.833A>C	p.Asn278Thr	p.N278T	ENST00000241453	NM_004119.2	278	aAc/aCc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382171	152382171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	89	374	0	ENST00000206249.3:c.1281G>A	p.Met427Ile	p.M427I	ENST00000206249	NM_000125.3	427	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577522	7577522	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	76	562	0	ENST00000269305.4:c.759del	p.Ile254SerfsTer91	p.I254Sfs*91	ENST00000269305	NM_001126112.2	253	acC/ac																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254926	16254926	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	48	530	0	ENST00000375759.3:c.2191T>A	p.Leu731Met	p.L731M	ENST00000375759	NM_015001.2	731	Ttg/Atg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518171	103518171	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	32	345	0	ENST00000355739.4:c.2109C>G	p.Asp703Glu	p.D703E	ENST00000355739	NM_000123.3	703	gaC/gaG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	49	439	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0031281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	49	419	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922802	44922802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	49	351	0	ENST00000377967.4:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000377967	NM_021140.2	555	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591977	48591977	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0031281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	10	230	0	ENST00000342988.3:c.1139+1G>T		p.X380_splice	ENST00000342988	NM_005359.5	380																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27100988	27100988	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	42	565	0	ENST00000324856.7:c.4270C>T	p.Gln1424Ter	p.Q1424*	ENST00000324856	NM_006015.4	1424	Cag/Tag																																																																															
PGR	5241	MSKCC	GRCh37	11	100933303	100933303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	17	528	0	ENST00000325455.5:c.2087C>T	p.Pro696Leu	p.P696L	ENST00000325455	NM_001202474.3	696	cCa/cTa																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30322633	30322633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	35	527	0	ENST00000322652.5:c.1646G>T	p.Gly549Val	p.G549V	ENST00000322652	NM_015355.2	549	gGg/gTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302395	15302395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	24	776	0	ENST00000263388.2:c.876C>G	p.Phe292Leu	p.F292L	ENST00000263388	NM_000435.2	292	ttC/ttG																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793431	242793431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	50	568	1	ENST00000334409.5:c.646G>T	p.Val216Leu	p.V216L	ENST00000334409	NM_005018.2	216	Gtg/Ttg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098368	47098368	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	33	449	0	ENST00000409792.3:c.6906T>A	p.Cys2302Ter	p.C2302*	ENST00000409792	NM_014159.6	2302	tgT/tgA																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164136	47164136	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0031281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	15	345	0	ENST00000409792.3:c.1990A>T	p.Arg664Ter	p.R664*	ENST00000409792	NM_014159.6	664	Aga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507435	8507435	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0031281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	16	223	0	ENST00000356435.5:c.1544-1G>T		p.X515_splice	ENST00000356435		515																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0031293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	107	516	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0031293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	128	660	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2983998	2983998	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	73	614	0	ENST00000396946.4:c.532G>C	p.Glu178Gln	p.E178Q	ENST00000396946	NM_032415.4	178	Gag/Cag																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115268991	115268991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	115	458	0	ENST00000438362.2:c.1619G>A	p.Ser540Asn	p.S540N	ENST00000438362	NM_001242891.1	540	aGt/aAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690841	89690849	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCAGAGGTA	GCAGAGGTA	-			P-0031293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	71	490	0	ENST00000371953.3:c.249_253+4del		p.X83_splice	ENST00000371953	NM_000314.4	83																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71948682	71948682	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	69	627	0	ENST00000298229.2:c.3394G>T	p.Glu1132Ter	p.E1132*	ENST00000298229	NM_001567.3	1132	Gag/Tag																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527822	103527822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	123	546	0	ENST00000355739.4:c.3130G>A	p.Glu1044Lys	p.E1044K	ENST00000355739	NM_000123.3	1044	Gaa/Aaa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350072	15350072	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	113	599	0	ENST00000263377.2:c.3580C>G	p.Leu1194Val	p.L1194V	ENST00000263377	NM_058243.2	1194	Ctg/Gtg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39251251	39251251	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	133	607	0	ENST00000402219.2:c.1102G>C	p.Glu368Gln	p.E368Q	ENST00000402219	NM_005633.3	368	Gaa/Caa																																																																															
CASP8	841	MSKCC	GRCh37	2	202131498	202131498	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	115	583	0	ENST00000358485.4:c.466C>T	p.Gln156Ter	p.Q156*	ENST00000358485	NM_001080125.1	156	Caa/Taa																																																																															
EP300	2033	MSKCC	GRCh37	22	41533715	41533715	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	154	666	1	ENST00000263253.7:c.1681C>T	p.Gln561Ter	p.Q561*	ENST00000263253	NM_001429.3	561	Caa/Taa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636685	176636685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	46	502	0	ENST00000439151.2:c.1285G>A	p.Glu429Lys	p.E429K	ENST00000439151	NM_022455.4	429	Gaa/Aaa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984166	2984166	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	27	321	0	ENST00000396946.4:c.364G>T	p.Glu122Ter	p.E122*	ENST00000396946	NM_032415.4	122	Gaa/Taa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53224431	53224432	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0031293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	100	311	0	ENST00000375401.3:c.3281_3282del	p.Ser1094LeufsTer35	p.S1094Lfs*35	ENST00000375401	NM_004187.3	1094	tCT/t																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0031299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	40	675	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0031299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	58	669	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241678	55241678	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs397517085		P-0031299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	61	719	0	ENST00000275493.2:c.2126A>C	p.Glu709Ala	p.E709A	ENST00000275493	NM_005228.3	709	gAa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	83	800	1	ENST00000269305.4:c.403T>A	p.Cys135Ser	p.C135S	ENST00000269305	NM_001126112.2	135	Tgc/Agc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118392119	118392119	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	176	528	0	ENST00000534358.1:c.11630A>G	p.Tyr3877Cys	p.Y3877C	ENST00000534358	NM_005933.3	3877	tAt/tGt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28602354	28602354	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	203	648	0	ENST00000241453.7:c.2014G>C	p.Glu672Gln	p.E672Q	ENST00000241453	NM_004119.2	672	Gag/Cag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346466	89346466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	264	788	0	ENST00000301030.4:c.6484C>A	p.Pro2162Thr	p.P2162T	ENST00000301030	NM_001256183.1	2162	Cct/Act																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868282	37868282	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	542	715	0	ENST00000269571.5:c.1003A>T	p.Ser335Cys	p.S335C	ENST00000269571		335	Agc/Tgc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610399	10610399	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	289	836	1	ENST00000171111.5:c.311G>T	p.Ser104Ile	p.S104I	ENST00000171111	NM_203500.1	104	aGc/aTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098381	11098382	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0031301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	233	551	1	ENST00000344626.4:c.900_901del	p.Lys301AlafsTer85	p.K301Afs*85	ENST00000344626	NM_003072.3	300	cAG/c																																																																															
FYN	2534	MSKCC	GRCh37	6	112017563	112017563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	207	646	0	ENST00000368678.4:c.950A>G	p.Lys317Arg	p.K317R	ENST00000368678		317	aAg/aGg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900096	151900096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	186	596	0	ENST00000262189.6:c.4015G>A	p.Glu1339Lys	p.E1339K	ENST00000262189	NM_170606.2	1339	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	268	565	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	437	503	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	179	447	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
MAX	4149	MSKCC	GRCh37	14	65544655	65544655	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	541	567	0	ENST00000358664.4:c.271C>T	p.Gln91Ter	p.Q91*	ENST00000358664	NM_002382.4	91	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832398	72832398	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	223	552	0	ENST00000268489.5:c.4183G>C	p.Asp1395His	p.D1395H	ENST00000268489	NM_006885.3	1395	Gat/Cat																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255875	16255875	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	235	564	0	ENST00000375759.3:c.3140G>C	p.Arg1047Thr	p.R1047T	ENST00000375759	NM_015001.2	1047	aGa/aCa																																																																															
RIT1	6016	MSKCC	GRCh37	1	155870224	155870224	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	585	724	0	ENST00000368323.3:c.615G>C	p.Lys205Asn	p.K205N	ENST00000368323	NM_006912.5	205	aaG/aaC																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348903	11348903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	145	322	0	ENST00000332029.2:c.433G>T	p.Asp145Tyr	p.D145Y	ENST00000332029	NM_003745.1	145	Gac/Tac																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30128588	30128588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	214	536	0	ENST00000263025.4:c.794C>T	p.Ser265Phe	p.S265F	ENST00000263025	NM_002746.2	265	tCc/tTc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974932	15974932	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	222	578	0	ENST00000268712.3:c.3943C>G	p.Pro1315Ala	p.P1315A	ENST00000268712	NM_006311.3	1315	Ccc/Gcc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974965	15974965	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	185	548	0	ENST00000268712.3:c.3910A>G	p.Thr1304Ala	p.T1304A	ENST00000268712	NM_006311.3	1304	Aca/Gca																																																																															
BRCA1	672	MSKCC	GRCh37	17	41226464	41226464	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	263	687	0	ENST00000357654.3:c.4559G>C	p.Arg1520Thr	p.R1520T	ENST00000357654	NM_007294.3	1520	aGa/aCa																																																																															
PMAIP1	5366	MSKCC	GRCh37	18	57567440	57567440	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	218	422	0	ENST00000316660.6:c.31C>T	p.Gln11Ter	p.Q11*	ENST00000316660	NM_021127.2	11	Caa/Taa																																																																															
TET2	54790	MSKCC	GRCh37	4	106157256	106157256	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	260	641	0	ENST00000380013.4:c.2157del	p.Leu719PhefsTer32	p.L719Ffs*32	ENST00000380013	NM_001127208.2	719	ttG/tt																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815823	32815823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	254	583	0	ENST00000354258.4:c.1793G>A	p.Gly598Glu	p.G598E	ENST00000354258	NM_000593.5	598	gGa/gAa																																																																															
HGF	3082	MSKCC	GRCh37	7	81359096	81359096	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	139	425	0	ENST00000222390.5:c.866-1G>T		p.X289_splice	ENST00000222390	NM_000601.4	289																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139404376	139404376	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	280	735	0	ENST00000277541.6:c.2778C>G	p.Ile926Met	p.I926M	ENST00000277541	NM_017617.3	926	atC/atG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0031304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	589	622	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0031304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	285	733	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26046026	26046026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	179	458	1	ENST00000540144.1:c.388C>T	p.Arg130Cys	p.R130C	ENST00000540144	NM_003531.2	130	Cgc/Tgc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939473	71939473	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	293	752	0	ENST00000298229.2:c.328G>C	p.Val110Leu	p.V110L	ENST00000298229	NM_001567.3	110	Gtg/Ctg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18800822	18800822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	150	443	0	ENST00000266497.5:c.4198G>A	p.Glu1400Lys	p.E1400K	ENST00000266497		1400	Gaa/Aaa																																																																															
STK11	6794	MSKCC	GRCh37	19	1223138	1223138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	270	651	0	ENST00000326873.7:c.1075G>A	p.Asp359Asn	p.D359N	ENST00000326873	NM_000455.4	359	Gac/Aac																																																																															
TET2	54790	MSKCC	GRCh37	4	106195611	106196633	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AACATTCCCGAATCTTACATAATAAATCTTATTTTAATTATTTAGCAAATTCCATTGCATGCCAGGCAATGAAGAAGTAAGTAAAATAAAACATTTTCCTTCCCATTTAGGAATTTACTTACCAGTGGGGGTGAAGAGAGGGCTAAAAACATAACTATAATACATTGTGAGTATTGCTTTATCAGATCTATCTTTGCAGTTGAGTATTACAAAAGCACTAGAAGATGAGGTCAAAGCGGTCCCTTGAGGAAGGGATGACTACACCAAGGAAGGATAGGGAGAGAGGGAGGAAAAGGGAGGCACTTCAAGCAGAGGCATGTTCAGAAGTTCCAAAGAACATTTTGCTCTCAATGGAATGGCTTTGGATGTTTATTACATTTTTTTTTTCACTAAGTTTTGTATTTCTAATGCCTTAGACAAAAAATTGTGCTGGACAATGATCAGAACCCTGACTTTGCTCTTATCTTTGCTTAATGGGTGTCGTATATCACTAGTGGAGTTTCTTACCTACATTTAAGTATCCTCACTAGCCTTCATAAAATAATCATCAACATCAAAGATACCTGTTTCTGTTCTCTCTTACCCTGTCCACAGAACTTTTGCGACTTTCAGGACCAGTCATGCAGCAGTCCCAGCAGCCCCAGCCTCTACAGAAGCAGCCACCACAGCCCCAGCAGCAGCAGAGACCCCAGCAGCAGCAGCCACATCACCCTCAGACAGAGTCTGTCAACTCTTATTCTGCTTCTGGATCCACCAATCCATACATGAGACGGCCCAATCCAGTTAGTCCTTATCCAAACTCTTCACACACTTCAGATATCTATGGAAGCACCAGCCCTATGAACTTCTATTCCACCTCATCTCAAGCTGCAGGTTCATATTTGAATTCTTCTAATCCCATGAACCCTTACCCTGGGCTTTTGAATCAGAATACCCAATATCCATCATATCAATGCAATGGAAACCTATCAGTGGACAACTGCTCCCCATATCTGGGTTCCTATTCTCCCCAGTCTCAGCCGA	AACATTCCCGAATCTTACATAATAAATCTTATTTTAATTATTTAGCAAATTCCATTGCATGCCAGGCAATGAAGAAGTAAGTAAAATAAAACATTTTCCTTCCCATTTAGGAATTTACTTACCAGTGGGGGTGAAGAGAGGGCTAAAAACATAACTATAATACATTGTGAGTATTGCTTTATCAGATCTATCTTTGCAGTTGAGTATTACAAAAGCACTAGAAGATGAGGTCAAAGCGGTCCCTTGAGGAAGGGATGACTACACCAAGGAAGGATAGGGAGAGAGGGAGGAAAAGGGAGGCACTTCAAGCAGAGGCATGTTCAGAAGTTCCAAAGAACATTTTGCTCTCAATGGAATGGCTTTGGATGTTTATTACATTTTTTTTTTCACTAAGTTTTGTATTTCTAATGCCTTAGACAAAAAATTGTGCTGGACAATGATCAGAACCCTGACTTTGCTCTTATCTTTGCTTAATGGGTGTCGTATATCACTAGTGGAGTTTCTTACCTACATTTAAGTATCCTCACTAGCCTTCATAAAATAATCATCAACATCAAAGATACCTGTTTCTGTTCTCTCTTACCCTGTCCACAGAACTTTTGCGACTTTCAGGACCAGTCATGCAGCAGTCCCAGCAGCCCCAGCCTCTACAGAAGCAGCCACCACAGCCCCAGCAGCAGCAGAGACCCCAGCAGCAGCAGCCACATCACCCTCAGACAGAGTCTGTCAACTCTTATTCTGCTTCTGGATCCACCAATCCATACATGAGACGGCCCAATCCAGTTAGTCCTTATCCAAACTCTTCACACACTTCAGATATCTATGGAAGCACCAGCCCTATGAACTTCTATTCCACCTCATCTCAAGCTGCAGGTTCATATTTGAATTCTTCTAATCCCATGAACCCTTACCCTGGGCTTTTGAATCAGAATACCCAATATCCATCATATCAATGCAATGGAAACCTATCAGTGGACAACTGCTCCCCATATCTGGGTTCCTATTCTCCCCAGTCTCAGCCGA	-			P-0031304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1	72	0	0	ENST00000380013.4:c.4538-594_4966del		p.X1513_splice	ENST00000380013	NM_001127208.2	1513																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	90	437	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0031025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	164	706	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729968	30729968	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	66	399	0	ENST00000359013.4:c.1564C>T	p.Arg522Ter	p.R522*	ENST00000359013	NM_001024847.2	522	Cga/Tga																																																																															
ATR	545	MSKCC	GRCh37	3	142281421	142281421	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	48	641	0	ENST00000350721.4:c.823G>T	p.Glu275Ter	p.E275*	ENST00000350721	NM_001184.3	275	Gaa/Taa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970953	21970992	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCGCAGCCGCGCGCAGGTACCGTGCGACATCGCGATGG	CCCCGCAGCCGCGCGCAGGTACCGTGCGACATCGCGATGG	-			P-0031025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	81	640	0	ENST00000304494.5:c.366_405del	p.His123AlafsTer10	p.H123Afs*10	ENST00000304494	NM_000077.4	122	ggCCATCGCGATGTCGCACGGTACCTGCGCGCGGCTGCGGGG/gg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871758	12871758	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0031178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	118	352	1	ENST00000228872.4:c.476-1G>T		p.X159_splice	ENST00000228872	NM_004064.3	159																																																																																
CDH1	999	MSKCC	GRCh37	16	68849452	68849452	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	157	797	1	ENST00000261769.5:c.1355T>C	p.Leu452Pro	p.L452P	ENST00000261769	NM_004360.3	452	cTa/cCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541079	187541079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	127	529	1	ENST00000441802.2:c.6661G>A	p.Gly2221Arg	p.G2221R	ENST00000441802	NM_005245.3	2221	Gga/Aga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	236	621	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0031179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	206	818	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0031182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	188	635	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0031182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	354	658	3	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0031182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	210	869	4	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	105	409	1	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0031182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	147	603	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278074	18278074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	216	924	1	ENST00000222254.8:c.1694C>T	p.Pro565Leu	p.P565L	ENST00000222254	NM_005027.3	565	cCg/cTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120708	115120708	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	212	931	0	ENST00000257566.3:c.298G>T	p.Glu100Ter	p.E100*	ENST00000257566	NM_016569.3	100	Gag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419974	41419974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	116	706	0	ENST00000373198.4:c.347G>T	p.Ser116Ile	p.S116I	ENST00000373198	NM_133170.3	116	aGc/aTc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713813	30713849	+	protein_altering_variant	In_Frame_Del	DEL	CTCAAGAGCTCCAATATCCTCGTGAAGAACGACCTAA	CTCAAGAGCTCCAATATCCTCGTGAAGAACGACCTAA	GATG			P-0031182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	112	860	4	ENST00000359013.4:c.1213_1249delinsGATG	p.Leu405_Thr417delinsAspAla	p.L405_T417delinsDA	ENST00000359013	NM_001024847.2	405	CTCAAGAGCTCCAATATCCTCGTGAAGAACGACCTAAcc/GATGcc																																																																															
SMO	6608	MSKCC	GRCh37	7	128829221	128829221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	112	527	1	ENST00000249373.3:c.229G>A	p.Val77Met	p.V77M	ENST00000249373	NM_005631.4	77	Gtg/Atg																																																																															
BTK	695	MSKCC	GRCh37	X	100630190	100630190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	293	790	0	ENST00000308731.7:c.83G>A	p.Arg28His	p.R28H	ENST00000308731	NM_000061.2	28	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092740	27092740	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	112	516	0	ENST00000324856.7:c.2765delG	p.Gly922AlafsTer2	p.G922Afs*2	ENST00000324856	NM_006015.4	921	Ggg/gg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098954	178098954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	105	382	0	ENST00000397062.3:c.91G>A	p.Gly31Arg	p.G31R	ENST00000397062	NM_006164.4	31	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577537	7577538	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	361	822	3	ENST00000269305.4:c.743_744delinsTT	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGG/cTT																																																																															
TERT	7015	MSKCC	GRCh37	5	1294285	1294285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	377	672	0	ENST00000310581.5:c.716G>A	p.Arg239Lys	p.R239K	ENST00000310581	NM_198253.2	239	aGg/aAg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259667	16259667	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	186	715	1	ENST00000375759.3:c.6932C>A	p.Ser2311Ter	p.S2311*	ENST00000375759	NM_015001.2	2311	tCa/tAa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176085797	176085798	+	missense_variant	Missense_Mutation	DNP	TC	TC	GA			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	92	642	0	ENST00000367669.3:c.988_989inv	p.Glu330Ser	p.E330S	ENST00000367669	NM_022457.5	330	GAa/TCa																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112769486	112769486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	73	638	0	ENST00000369452.4:c.1438A>G	p.Asn480Asp	p.N480D	ENST00000369452	NM_007373.3	480	Aac/Gac																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123298165	123298165	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	163	642	0	ENST00000358487.5:c.689C>G	p.Thr230Ser	p.T230S	ENST00000358487	NM_000141.4	230	aCc/aGc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492580	56492580	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	339	678	0	ENST00000267101.3:c.2730G>T	p.Glu910Asp	p.E910D	ENST00000267101	NM_001982.3	910	gaG/gaT																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103504612	103504612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	105	341	0	ENST00000355739.4:c.233G>T	p.Gly78Val	p.G78V	ENST00000355739	NM_000123.3	78	gGg/gTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288709	15288710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	48	101	0	ENST00000263388.2:c.4029dup	p.Cys1344LeufsTer219	p.C1344Lfs*219	ENST00000263388	NM_000435.2	1343	-/C																																																																															
PMS1	5378	MSKCC	GRCh37	2	190742106	190742106	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	199	668	0	ENST00000441310.2:c.2743T>A	p.Cys915Ser	p.C915S	ENST00000441310	NM_000534.4	915	Tgt/Agt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499355	89499355	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	205	486	0	ENST00000336596.2:c.2525G>C	p.Arg842Pro	p.R842P	ENST00000336596	NM_005233.5	842	cGa/cCa																																																																															
LYN	4067	MSKCC	GRCh37	8	56864629	56864629	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	123	730	0	ENST00000519728.1:c.592C>G	p.Arg198Gly	p.R198G	ENST00000519728	NM_002350.3	198	Cga/Gga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971045	21971045	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	298	574	0	ENST00000304494.5:c.313del	p.Asp105ThrfsTer41	p.D105Tfs*41	ENST00000304494	NM_000077.4	105	Gac/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	331	529	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445271	49445271	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200451733		P-0031241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	412	724	1	ENST00000301067.7:c.2195C>T	p.Pro732Leu	p.P732L	ENST00000301067	NM_003482.3	732	cCg/cTg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060799	38060799	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	406	798	0	ENST00000250448.2:c.1190A>G	p.Asn397Ser	p.N397S	ENST00000250448	NM_004496.3	397	aAc/aGc																																																																															
CD276	80381	MSKCC	GRCh37	15	73994907	73994907	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	48	77	0	ENST00000318443.5:c.391A>G	p.Ser131Gly	p.S131G	ENST00000318443	NM_001024736.1	131	Agc/Ggc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251007	99251007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	266	468	0	ENST00000268035.6:c.311C>T	p.Thr104Met	p.T104M	ENST00000268035	NM_000875.3	104	aCg/aTg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108663	8108663	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	335	540	1	ENST00000585124.1:c.732G>T	p.Met244Ile	p.M244I	ENST00000585124	NM_004217.3	244	atG/atT																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761006	59761006	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	290	502	0	ENST00000259008.2:c.3401C>G	p.Pro1134Arg	p.P1134R	ENST00000259008	NM_032043.2	1134	cCt/cGt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610330	10610330	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	759	714	1	ENST00000171111.5:c.380G>T	p.Gly127Val	p.G127V	ENST00000171111	NM_203500.1	127	gGt/gTt																																																																															
ALK	238	MSKCC	GRCh37	2	29543638	29543638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	308	549	0	ENST00000389048.3:c.1525G>A	p.Ala509Thr	p.A509T	ENST00000389048	NM_004304.4	509	Gcc/Acc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520192	9520192	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	253	427	1	ENST00000353224.5:c.2077G>T	p.Glu693Ter	p.E693*	ENST00000353224	NM_177990.2	693	Gaa/Taa																																																																															
KIT	3815	MSKCC	GRCh37	4	55602910	55602910	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	492	368	0	ENST00000288135.5:c.2620C>A	p.Pro874Thr	p.P874T	ENST00000288135	NM_000222.2	874	Ccg/Acg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	838	804	1	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11182140	11182140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	375	723	1	ENST00000361445.4:c.6706C>T	p.Leu2236Phe	p.L2236F	ENST00000361445	NM_004958.3	2236	Ctc/Ttc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23632761	23632761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	287	627	0	ENST00000261584.4:c.3035C>T	p.Thr1012Ile	p.T1012I	ENST00000261584	NM_024675.3	1012	aCt/aTt																																																																															
PPARG	5468	MSKCC	GRCh37	3	12475534	12475534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	262	699	2	ENST00000287820.6:c.1408C>T	p.Leu470Phe	p.L470F	ENST00000287820	NM_015869.4	470	Ctc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	54	572	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	417	538	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0031221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	805	701	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0031221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	386	336	0	ENST00000257430.4:c.4128T>A	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taA																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137283	64137283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	269	717	2	ENST00000334205.4:c.1715C>T	p.Thr572Met	p.T572M	ENST00000334205	NM_003942.2	572	aCg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434863	49434864	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	510	904	0	ENST00000301067.7:c.6689dup	p.Pro2231ThrfsTer12	p.P2231Tfs*12	ENST00000301067	NM_003482.3	2230	cca/ccCa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32185035	32185035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	217	703	0	ENST00000375023.3:c.1633G>A	p.Gly545Ser	p.G545S	ENST00000375023	NM_004557.3	545	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	201	724	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0031228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	264	890	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435287	49435287	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	229	877	0	ENST00000301067.7:c.6266del	p.Lys2089ArgfsTer5	p.K2089Rfs*5	ENST00000301067	NM_003482.3	2089	aAg/ag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0031249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	90	619	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579367	7579367	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	278	788	0	ENST00000269305.4:c.320del	p.Tyr107SerfsTer16	p.Y107Sfs*16	ENST00000269305	NM_001126112.2	107	tAc/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	60	509	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0031253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	41	345	2	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	62	419	1	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0031253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	43	342	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982395	201982395	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	256	878	1	ENST00000359651.3:c.774G>A	p.Trp258Ter	p.W258*	ENST00000359651		258	tgG/tgA																																																																															
CDH1	999	MSKCC	GRCh37	16	68846083	68846083	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	202	697	0	ENST00000261769.5:c.1055del	p.Gly352ValfsTer4	p.G352Vfs*4	ENST00000261769	NM_004360.3	352	Ggt/gt																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152864462	152864462	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	35	73	0	ENST00000406277.2:c.64G>C	p.Ala22Pro	p.A22P	ENST00000406277	NM_152274.4	22	Gcc/Ccc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	49	580	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	64	571	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578369	7578370	+	splice_donor_variant	Splice_Site	INS	-	-	CCATCGTTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCG			P-0031263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	26	689	0	ENST00000269305.4:c.559+1_559+2insCGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAACGATGG		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971035	21971036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0031263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	47	411	0	ENST00000304494.5:c.321_322dup	p.Asp108AlafsTer39	p.D108Afs*39	ENST00000304494	NM_000077.4	108	gat/gCGat																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929443	44929452	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGTGGGCT	ACAGTGGGCT	-			P-0031263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	55	820	0	ENST00000377967.4:c.2546_2555del	p.Ser849ThrfsTer15	p.S849Tfs*15	ENST00000377967	NM_021140.2	848	cACAGTGGGCTa/ca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242470	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	102	617	0	ENST00000275493.2:c.2240T>C	p.Leu747Ser	p.L747S	ENST00000275493	NM_005228.3	747	tTa/tCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241706	55241707	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0031267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	90	747	1	ENST00000275493.2:c.2154_2155delinsTT	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	718	ctGGgc/ctTTgc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972740	32972740	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	52	623	0	ENST00000380152.3:c.10090T>G	p.Ser3364Ala	p.S3364A	ENST00000380152		3364	Tct/Gct																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020983	26020983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	50	456	0	ENST00000357647.3:c.266C>A	p.Ala89Asp	p.A89D	ENST00000357647	NM_003529.2	89	gCt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	52	338	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MAX	4149	MSKCC	GRCh37	14	65560512	65560512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	76	336	0	ENST00000358664.4:c.85A>G	p.Asn29Asp	p.N29D	ENST00000358664	NM_002382.4	29	Aat/Gat																																																																															
RAD21	5885	MSKCC	GRCh37	8	117859890	117859890	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	52	226	0	ENST00000297338.2:c.1745T>G	p.Leu582Arg	p.L582R	ENST00000297338	NM_006265.2	582	cTt/cGt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045655	47045655	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0030964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	85	437	0	ENST00000329236.7:c.2304-2A>G		p.X768_splice	ENST00000329236	NM_001204466.1	768																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	80	367	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0030968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	125	554	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0030968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	65	307	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0030968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	46	272	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481903	56481905	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0030968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	104	519	1	ENST00000267101.3:c.833_835del	p.Thr278del	p.T278del	ENST00000267101	NM_001982.3	277	caCACc/cac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575666	48575667	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0030968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	22	448	0	ENST00000342988.3:c.430_431del	p.Ser144ArgfsTer7	p.S144Rfs*7	ENST00000342988	NM_005359.5	142	gaTCtc/gatc																																																																															
APC	324	MSKCC	GRCh37	5	112173560	112173560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	46	284	0	ENST00000257430.4:c.2269C>T	p.Gln757Ter	p.Q757*	ENST00000257430	NM_000038.5	757	Caa/Taa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45371747	45371748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	33	353	0	ENST00000262160.6:c.1243dup	p.Arg415LysfsTer25	p.R415Kfs*25	ENST00000262160	NM_005901.5	415	aga/aAga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	31	368	2	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696450	47696450	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	133	389	0	ENST00000347630.2:c.373T>G	p.Phe125Val	p.F125V	ENST00000347630	NM_001007230.1	125	Ttt/Gtt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0030976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	150	214	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056352	27056352	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0030976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	122	217	0	ENST00000324856.7:c.1348C>T	p.Gln450Ter	p.Q450*	ENST00000324856	NM_006015.4	450	Cag/Tag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11307699	11307699	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	179	358	0	ENST00000361445.4:c.1208G>T	p.Arg403Leu	p.R403L	ENST00000361445	NM_004958.3	403	cGa/cTa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	171	410	0	ENST00000347630.2:c.305T>C	p.Phe102Ser	p.F102S	ENST00000347630	NM_001007230.1	102	tTc/tCc																																																																															
ATR	545	MSKCC	GRCh37	3	142274839	142274840	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGT			P-0030976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	187	428	0	ENST00000350721.4:c.2220_2221insACA	p.Leu740_Phe741insThr	p.L740_F741insT	ENST00000350721	NM_001184.3	740	-/ACA																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0030159-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			254	12	228	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437178	49437178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	47	297	0	ENST00000301067.7:c.5501C>T	p.Ser1834Phe	p.S1834F	ENST00000301067	NM_003482.3	1834	tCc/tTc																																																																															
RB1	5925	MSKCC	GRCh37	13	48954198	48954198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	72	157	1	ENST00000267163.4:c.1399C>T	p.Arg467Ter	p.R467*	ENST00000267163	NM_000321.2	467	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	208	349	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140123	50140177	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGCACGCATGTACTGCTCTCTCATGGCCCCGAACTCTTCCTGGCCCGCGGTGT	CCAGCACGCATGTACTGCTCTCTCATGGCCCCGAACTCTTCCTGGCCCGCGGTGT	-			P-0030981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	32	361	0	ENST00000246792.3:c.248_302del	p.Asp83AlafsTer133	p.D83Afs*133	ENST00000246792	NM_006270.3	83	gACACCGCGGGCCAGGAAGAGTTCGGGGCCATGAGAGAGCAGTACATGCGTGCTGGc/gc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72842176	72842176	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	23	175	0	ENST00000325599.8:c.1072G>C	p.Val358Leu	p.V358L	ENST00000325599	NM_018130.2	358	Gtt/Ctt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs149680468		P-0030981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	96	208	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540718	187540718	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	84	178	0	ENST00000441802.2:c.7022T>G	p.Leu2341Arg	p.L2341R	ENST00000441802	NM_005245.3	2341	cTc/cGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55229252	55229252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	61	257	0	ENST00000275493.2:c.1559C>T	p.Pro520Leu	p.P520L	ENST00000275493	NM_005228.3	520	cCc/cTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8317896	8317896	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	80	200	0	ENST00000356435.5:c.5717G>T	p.Ser1906Ile	p.S1906I	ENST00000356435		1906	aGc/aTc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135776183	135776183	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	44	217	0	ENST00000298552.3:c.2544G>C	p.Leu848Phe	p.L848F	ENST00000298552	NM_001162426.1	848	ttG/ttC																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793433	242793433	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs2227982		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	155	537	1	ENST00000334409.5:c.644C>T	p.Ala215Val	p.A215V	ENST00000334409	NM_005018.2	215	gCc/gTc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	142	380	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	137	322	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	177	564	2	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	134	346	1	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	25	254	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1023835002		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	105	287	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																															
CASP8	841	MSKCC	GRCh37	2	202141584	202141584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	181	386	0	ENST00000358485.4:c.872C>A	p.Pro291His	p.P291H	ENST00000358485	NM_001080125.1	291	cCt/cAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	360	523	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296358	15296358	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	384	655	4	ENST00000263388.2:c.2084del	p.Pro695ArgfsTer165	p.P695Rfs*165	ENST00000263388	NM_000435.2	695	cCg/cg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	122	408	0	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	128	337	3	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	145	533	0	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3828768	3828768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	165	407	0	ENST00000262367.5:c.1874G>A	p.Arg625His	p.R625H	ENST00000262367	NM_004380.2	625	cGc/cAc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	301	437	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147533	47147533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	123	386	0	ENST00000409792.3:c.4793G>A	p.Arg1598Gln	p.R1598Q	ENST00000409792	NM_014159.6	1598	cGa/cAa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	107	302	0	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	178	517	5	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
RAD50	10111	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	155	364	4	ENST00000265335.6:c.2801delA	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14629033	14629035	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	107	405	0	ENST00000254322.2:c.127_129del	p.Glu43del	p.E43del	ENST00000254322	NM_006145.1	43	GAG/-																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	394	551	8	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480110	50480110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	167	420	0	ENST00000394963.4:c.344C>T	p.Ala115Val	p.A115V	ENST00000394963	NM_003076.4	115	gCg/gTg																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	143	389	2	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	164	426	1	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
POLE	5426	MSKCC	GRCh37	12	133245024	133245024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	182	526	1	ENST00000320574.5:c.2091del	p.Leu698CysfsTer94	p.L698Cfs*94	ENST00000320574	NM_006231.2	697	ccC/cc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510102	187510102	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368666671		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	167	348	0	ENST00000441802.2:c.13411G>A	p.Ala4471Thr	p.A4471T	ENST00000441802	NM_005245.3	4471	Gcg/Acg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401384	139401384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	197	572	1	ENST00000277541.6:c.3685G>A	p.Val1229Ile	p.V1229I	ENST00000277541	NM_017617.3	1229	Gtt/Att																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98238356	98238356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	109	384	0	ENST00000331920.6:c.1688C>T	p.Ala563Val	p.A563V	ENST00000331920	NM_000264.3	563	gCg/gTg																																																																															
BBC3	27113	MSKCC	GRCh37	19	47725018	47725019	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	227	681	0	ENST00000449228.1:c.725dupG	p.Arg243GlnfsTer7	p.R243Qfs*7	ENST00000449228	NM_001127240.2	242	ggc/ggGc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530163	63530163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145007501		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	146	388	0	ENST00000307078.5:c.2272G>A	p.Ala758Thr	p.A758T	ENST00000307078	NM_004655.3	758	Gcg/Acg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256501	16256501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	209	572	0	ENST00000375759.3:c.3766G>A	p.Glu1256Lys	p.E1256K	ENST00000375759	NM_015001.2	1256	Gaa/Aaa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546787	9546787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	94	227	0	ENST00000353224.5:c.1235C>T	p.Pro412Leu	p.P412L	ENST00000353224	NM_177990.2	412	cCg/cTg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2213961	2213961	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	200	572	4	ENST00000326181.6:c.45delG	p.Ser17AlafsTer111	p.S17Afs*111	ENST00000326181	NM_032271.2	14	Ggg/gg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395053	139395053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	141	491	2	ENST00000277541.6:c.5885G>A	p.Arg1962His	p.R1962H	ENST00000277541	NM_017617.3	1962	cGc/cAc																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519504	137519505	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	79	266	2	ENST00000367739.4:c.1132_1133dupAG	p.Ser378ArgfsTer6	p.S378Rfs*6	ENST00000367739	NM_000416.2	378	agt/agAGt																																																																															
CENPA	1058	MSKCC	GRCh37	2	27016049	27016049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	160	472	0	ENST00000335756.4:c.325G>A	p.Ala109Thr	p.A109T	ENST00000335756	NM_001809.3	109	Gcc/Acc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198257832	198257832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	183	414	0	ENST00000335508.6:c.3620C>T	p.Ser1207Leu	p.S1207L	ENST00000335508	NM_012433.2	1207	tCg/tTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17950344	17950344	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	217	652	0	ENST00000458235.1:c.1383del	p.Leu462CysfsTer3	p.L462Cfs*3	ENST00000458235	NM_000215.3	461	ggG/gg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346961	89346961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	85	272	0	ENST00000301030.4:c.5989G>A	p.Ala1997Thr	p.A1997T	ENST00000301030	NM_001256183.1	1997	Gcg/Acg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945048	151945048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	41	413	0	ENST00000262189.6:c.2471G>A	p.Gly824Asp	p.G824D	ENST00000262189	NM_170606.2	824	gGc/gAc																																																																															
BLM	641	MSKCC	GRCh37	15	91306294	91306294	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	122	330	0	ENST00000355112.3:c.1986del	p.Lys662AsnfsTer12	p.K662Nfs*12	ENST00000355112	NM_000057.2	661	Aaa/aa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099578	157099579	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	16	43	0	ENST00000346085.5:c.521dup	p.Pro177AlafsTer55	p.P177Afs*55	ENST00000346085	NM_020732.3	172	gac/gaCc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664882	138664882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	51	57	1	ENST00000330315.3:c.683C>T	p.Ala228Val	p.A228V	ENST00000330315	NM_023067.3	228	gCa/gTa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11288772	11288772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	93	429	0	ENST00000361445.4:c.2983C>T	p.Pro995Ser	p.P995S	ENST00000361445	NM_004958.3	995	Ccc/Tcc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111006	193111006	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	87	218	0	ENST00000367435.3:c.544del	p.Ile182LeufsTer20	p.I182Lfs*20	ENST00000367435	NM_024529.4	180	gAa/ga																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724562	112724562	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	165	432	1	ENST00000369452.4:c.446T>C	p.Met149Thr	p.M149T	ENST00000369452	NM_007373.3	149	aTg/aCg																																																																															
WT1	7490	MSKCC	GRCh37	11	32410704	32410704	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139893274		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	101	260	0	ENST00000332351.3:c.1454G>A	p.Arg485Gln	p.R485Q	ENST00000332351	NM_024426.4	485	cGg/cAg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200228	67200228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	160	487	0	ENST00000312629.5:c.536C>T	p.Thr179Met	p.T179M	ENST00000312629	NM_003952.2	179	aCg/aTg																																																																															
SESN3	143686	MSKCC	GRCh37	11	94963954	94963954	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	61	199	0	ENST00000536441.1:c.71T>C	p.Leu24Pro	p.L24P	ENST00000536441	NM_144665.3	24	cTg/cCg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998717	100998717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	121	484	1	ENST00000325455.5:c.1085C>T	p.Ala362Val	p.A362V	ENST00000325455	NM_001202474.3	362	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428217	49428217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	225	558	1	ENST00000301067.7:c.10483C>T	p.Pro3495Ser	p.P3495S	ENST00000301067	NM_003482.3	3495	Ccc/Tcc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109836	115109836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	91	260	0	ENST00000257566.3:c.2042C>T	p.Pro681Leu	p.P681L	ENST00000257566	NM_016569.3	681	cCg/cTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972803	32972803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	148	401	0	ENST00000380152.3:c.10153C>T	p.Arg3385Cys	p.R3385C	ENST00000380152		3385	Cgt/Tgt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434973	110434973	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	111	371	0	ENST00000375856.3:c.3428del	p.Gly1143AlafsTer116	p.G1143Afs*116	ENST00000375856	NM_003749.2	1143	gGc/gc																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872481	35872481	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	156	378	0	ENST00000216797.5:c.422A>G	p.Asp141Gly	p.D141G	ENST00000216797	NM_020529.2	141	gAc/gGc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701200	43701200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	201	452	0	ENST00000382044.4:c.5495C>T	p.Ser1832Phe	p.S1832F	ENST00000382044	NM_001141980.1	1832	tCt/tTt																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2645837	2645837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	151	440	0	ENST00000342085.4:c.1387G>A	p.Val463Met	p.V463M	ENST00000342085	NM_002613.4	463	Gtg/Atg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858705	9858705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	87	280	0	ENST00000330684.3:c.2696G>A	p.Arg899Gln	p.R899Q	ENST00000330684	NM_001134407.1	899	cGg/cAg																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349196	11349196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	21	11	0	ENST00000332029.2:c.140C>T	p.Ala47Val	p.A47V	ENST00000332029	NM_003745.1	47	gCc/gTc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30133298	30133298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	168	466	0	ENST00000263025.4:c.200G>A	p.Arg67His	p.R67H	ENST00000263025	NM_002746.2	67	cGc/cAc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671680	67671680	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201916739		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	181	404	0	ENST00000264010.4:c.2089G>A	p.Ala697Thr	p.A697T	ENST00000264010	NM_006565.3	697	Gca/Aca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993624	72993624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	137	469	0	ENST00000268489.5:c.421G>A	p.Ala141Thr	p.A141T	ENST00000268489	NM_006885.3	141	Gcg/Acg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89877156	89877156	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	190	473	0	ENST00000389301.3:c.481T>C	p.Phe161Leu	p.F161L	ENST00000389301	NM_000135.2	161	Ttc/Ctc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56434890	56434891	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	173	487	0	ENST00000407977.2:c.2246_2247del	p.Ser749Ter	p.S749*	ENST00000407977		749	tCT/t																																																																															
YES1	7525	MSKCC	GRCh37	18	736897	736897	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	208	544	1	ENST00000314574.4:c.1202A>C	p.Asn401Thr	p.N401T	ENST00000314574	NM_005433.3	401	aAt/aCt																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379697	17379697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	63	571	0	ENST00000359435.4:c.82C>A	p.Arg28Ser	p.R28S	ENST00000359435	NM_001033549.1	28	Cgc/Agc																																																																															
BBC3	27113	MSKCC	GRCh37	19	47730007	47730007	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	61	190	0	ENST00000449228.1:c.382T>G	p.Ser128Ala	p.S128A	ENST00000449228	NM_001127240.2	128	Tca/Gca																																																																															
MSH2	4436	MSKCC	GRCh37	2	47707840	47707840	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	113	266	0	ENST00000233146.2:c.2464T>G	p.Cys822Gly	p.C822G	ENST00000233146	NM_000251.2	822	Tgt/Ggt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37050348	37050349	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	147	376	0	ENST00000231790.2:c.503dup	p.Asn168LysfsTer4	p.N168Kfs*4	ENST00000231790	NM_000249.3	166	tta/ttAa																																																																															
MST1R	4486	MSKCC	GRCh37	3	49924799	49924799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	222	633	0	ENST00000296474.3:c.4144C>T	p.Pro1382Ser	p.P1382S	ENST00000296474	NM_002447.2	1382	Ccc/Tcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916747	178916747	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	169	362	0	ENST00000263967.3:c.134T>C	p.Ile45Thr	p.I45T	ENST00000263967	NM_006218.2	45	aTa/aCa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803576	1803576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	133	311	1	ENST00000260795.2:c.754C>T	p.Arg252Trp	p.R252W	ENST00000260795		252	Cgg/Tgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518033	187518033	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	177	414	1	ENST00000441802.2:c.12661C>A	p.Leu4221Met	p.L4221M	ENST00000441802	NM_005245.3	4221	Ctg/Atg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542414	187542414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	118	308	0	ENST00000441802.2:c.5326G>A	p.Glu1776Lys	p.E1776K	ENST00000441802	NM_005245.3	1776	Gaa/Aaa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636791	176636791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	179	438	0	ENST00000439151.2:c.1391C>A	p.Pro464His	p.P464H	ENST00000439151	NM_022455.4	464	cCt/cAt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180049730	180049730	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	132	409	0	ENST00000261937.6:c.1657+1G>A		p.X553_splice	ENST00000261937	NM_182925.4	553																																																																																
HIST1H3J	8356	MSKCC	GRCh37	6	27858400	27858401	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	101	402	0	ENST00000359303.2:c.170dup	p.Ser58ValfsTer3	p.S58Vfs*3	ENST00000359303	NM_003535.2	57	aag/aaAg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120713	94120713	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	118	334	0	ENST00000369303.4:c.338C>A	p.Pro113His	p.P113H	ENST00000369303	NM_004440.3	113	cCt/cAt																																																																															
FYN	2534	MSKCC	GRCh37	6	112041092	112041092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	152	366	0	ENST00000368678.4:c.163G>A	p.Ala55Thr	p.A55T	ENST00000368678		55	Gca/Aca																																																																															
ROS1	6098	MSKCC	GRCh37	6	117645553	117645553	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	173	462	0	ENST00000368508.3:c.5583T>G	p.Ser1861Arg	p.S1861R	ENST00000368508	NM_002944.2	1861	agT/agG																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467922	50467922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	62	350	0	ENST00000331340.3:c.1157G>A	p.Arg386His	p.R386H	ENST00000331340	NM_006060.4	386	cGc/cAc																																																																															
HGF	3082	MSKCC	GRCh37	7	81334789	81334789	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	130	385	0	ENST00000222390.5:c.1927A>G	p.Ser643Gly	p.S643G	ENST00000222390	NM_000601.4	643	Agc/Ggc																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540396	23540396	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	27	58	0	ENST00000380871.4:c.7A>G	p.Arg3Gly	p.R3G	ENST00000380871	NM_006167.3	3	Agg/Ggg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68993058	68993058	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	124	368	0	ENST00000288368.4:c.1865del	p.Gly622AspfsTer22	p.G622Dfs*22	ENST00000288368	NM_024870.2	621	aaG/aa																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128347850	128347850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	35	468	0	ENST00000265960.3:c.655C>T	p.Arg219Trp	p.R219W	ENST00000265960	NM_001006617.1	219	Cgg/Tgg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137313568	137313568	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	236	693	0	ENST00000481739.1:c.827T>C	p.Leu276Pro	p.L276P	ENST00000481739	NM_002957.4	276	cTt/cCt																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841259	15841259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	89	189	0	ENST00000307771.7:c.1343G>A	p.Arg448His	p.R448H	ENST00000307771	NM_005089.3	448	cGc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70346845	70346845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	158	399	0	ENST00000374080.3:c.2712G>T	p.Glu904Asp	p.E904D	ENST00000374080		904	gaG/gaT																																																																															
ATRX	546	MSKCC	GRCh37	X	76940474	76940474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	187	417	0	ENST00000373344.5:c.619G>A	p.Asp207Asn	p.D207N	ENST00000373344	NM_000489.3	207	Gat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	69	486	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0031131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	161	776	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
PAK1	5058	MSKCC	GRCh37	11	77047205	77047205	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	93	506	0	ENST00000356341.3:c.1339A>G	p.Ile447Val	p.I447V	ENST00000356341	NM_002576.4	447	Atc/Gtc																																																																															
SETD8	387893	MSKCC	GRCh37	12	123874011	123874013	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs780061449		P-0031135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	10	45	0	ENST00000330479.4:c.62_64del	p.Ala21del	p.A21del	ENST00000330479	NM_020382.3	14	gaGGCg/gag																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246078851	246078851	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61762672		P-0031135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	130	604	2	ENST00000388985.4:c.794G>A	p.Arg265His	p.R265H	ENST00000388985		265	cGt/cAt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782198	9782198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	20	476	0	ENST00000377346.4:c.2221C>A	p.Leu741Met	p.L741M	ENST00000377346	NM_005026.3	741	Ctg/Atg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18499742	18499742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	16	368	0	ENST00000266497.5:c.1597C>T	p.His533Tyr	p.H533Y	ENST00000266497		533	Cac/Tac																																																																															
RARA	5914	MSKCC	GRCh37	17	38508653	38508653	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	171	703	0	ENST00000254066.5:c.701A>T	p.Lys234Met	p.K234M	ENST00000254066	NM_000964.3	234	aAg/aTg																																																																															
BCL6	604	MSKCC	GRCh37	3	187440284	187440285	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	23	482	0	ENST00000232014.4:c.2082dup	p.Ala695SerfsTer3	p.A695Sfs*3	ENST00000232014	NM_001130845.1	694	-/A																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057092	180057092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	25	645	0	ENST00000261937.6:c.527T>C	p.Leu176Pro	p.L176P	ENST00000261937	NM_182925.4	176	cTg/cCg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528868	157528868	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	95	534	0	ENST00000346085.5:c.6593C>G	p.Ala2198Gly	p.A2198G	ENST00000346085	NM_020732.3	2198	gCg/gGg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2951873	2951873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	181	596	0	ENST00000396946.4:c.3077C>T	p.Ser1026Phe	p.S1026F	ENST00000396946	NM_032415.4	1026	tCc/tTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55214315	55214318	+	frameshift_variant	Frame_Shift_Del	DEL	CGTG	CGTG	-			P-0031135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	31	482	0	ENST00000275493.2:c.443_446del	p.Val148GlyfsTer19	p.V148Gfs*19	ENST00000275493	NM_005228.3	147	gcCGTG/gc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038879	12038879	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	220	439	1	ENST00000396373.4:c.1172A>G	p.Tyr391Cys	p.Y391C	ENST00000396373	NM_001987.4	391	tAt/tGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061232	38061232	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1486264414		P-0031137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	52	510	0	ENST00000250448.2:c.757A>G	p.Met253Val	p.M253V	ENST00000250448	NM_004496.3	253	Atg/Gtg																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729084	66729100	+	protein_altering_variant	In_Frame_Del	DEL	CTAATTCATCTGGAGAT	CTAATTCATCTGGAGAT	GAGAG			P-0031137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	198	568	1	ENST00000307102.5:c.292_308delinsGAGAG	p.Leu98_Ile103delinsGluSer	p.L98_I103delinsES	ENST00000307102	NM_002755.3	98	CTAATTCATCTGGAGATc/GAGAGc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0031139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	59	367	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
EP300	2033	MSKCC	GRCh37	22	41547874	41547874	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	45	438	0	ENST00000263253.7:c.2855C>G	p.Ser952Ter	p.S952*	ENST00000263253	NM_001429.3	952	tCa/tGa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103717	47103717	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	56	477	0	ENST00000409792.3:c.6229C>T	p.Arg2077Ter	p.R2077*	ENST00000409792	NM_014159.6	2077	Cga/Tga																																																																															
AKT1	207	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	53	589	0	ENST00000349310.3:c.155T>G	p.Leu52Arg	p.L52R	ENST00000349310	NM_001014432.1	52	cTc/cGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094347	27094347	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	37	500	0	ENST00000324856.7:c.3055G>C	p.Glu1019Gln	p.E1019Q	ENST00000324856	NM_006015.4	1019	Gag/Cag																																																																															
EED	8726	MSKCC	GRCh37	11	85977198	85977198	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	25	449	0	ENST00000263360.6:c.800C>G	p.Ser267Ter	p.S267*	ENST00000263360	NM_003797.3	267	tCa/tGa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223316	36223316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	94	895	0	ENST00000222270.7:c.5866G>T	p.Gly1956Trp	p.G1956W	ENST00000222270	NM_014727.1	1956	Ggg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	206	509	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0031140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	66	507	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	43	387	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920402	114920402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	163	549	0	ENST00000543371.1:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000543371	NM_001198531.1	448	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912195	114912195	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	143	539	0	ENST00000543371.1:c.1265A>G	p.Asn422Ser	p.N422S	ENST00000543371	NM_001198531.1	422	aAc/aGc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822385	72822385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	75	833	1	ENST00000268489.5:c.9790G>A	p.Ala3264Thr	p.A3264T	ENST00000268489	NM_006885.3	3264	Gcc/Acc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554198	63554198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	146	680	0	ENST00000307078.5:c.541G>T	p.Val181Leu	p.V181L	ENST00000307078	NM_004655.3	181	Gtg/Ttg																																																																															
APC	324	MSKCC	GRCh37	5	112174843	112174844	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0031140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	67	357	0	ENST00000257430.4:c.3554_3555delCA	p.Thr1185ArgfsTer22	p.T1185Rfs*22	ENST00000257430	NM_000038.5	1184	gcCAca/gcca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	61	433	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288996	33288996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	70	490	2	ENST00000374542.5:c.556C>T	p.Arg186Trp	p.R186W	ENST00000374542	NM_001141970.1	186	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0031148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	18	485	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0031148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	17	476	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0031149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	40	420	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106547287	106547287	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148771912		P-0031149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	46	437	0	ENST00000369096.4:c.524C>T	p.Ala175Val	p.A175V	ENST00000369096	NM_001198.3	175	gCg/gTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129198	2129198	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0031151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	229	767	1	ENST00000219476.3:c.3131+1G>T		p.X1044_splice	ENST00000219476	NM_000548.3	1044																																																																																
EPAS1	2034	MSKCC	GRCh37	2	46607619	46607619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	486	837	3	ENST00000263734.3:c.1808C>T	p.Pro603Leu	p.P603L	ENST00000263734	NM_001430.4	603	cCc/cTc																																																																															
MED12	9968	MSKCC	GRCh37	X	70345223	70345223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	161	599	1	ENST00000374080.3:c.2249G>A	p.Cys750Tyr	p.C750Y	ENST00000374080		750	tGc/tAc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252911	36252911	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	AA			P-0031151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	230	431	0	ENST00000300305.3:c.451delinsTT	p.Met151PhefsTer9	p.M151Ffs*9	ENST00000300305		151	Atg/TTtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0031046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	131	564	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55211080	55211080	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519828		P-0031046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	132	595	0	ENST00000275493.2:c.323G>A	p.Arg108Lys	p.R108K	ENST00000275493	NM_005228.3	108	aGa/aAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	136	404	2	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115280160	115280160	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	172	403	0	ENST00000438362.2:c.472T>G	p.Leu158Val	p.L158V	ENST00000438362	NM_001242891.1	158	Tta/Gta																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111467	8111467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	207	489	2	ENST00000346208.3:c.953C>T	p.Ala318Val	p.A318V	ENST00000346208		318	gCg/gTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70360793	70360793	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	39	300	0	ENST00000373644.4:c.1968+2T>C		p.X656_splice	ENST00000373644	NM_030625.2	656																																																																																
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	89	300	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	61	252	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	190	462	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742865	17742865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	216	636	0	ENST00000250003.3:c.773G>A	p.Arg258His	p.R258H	ENST00000250003	NM_002478.4	258	cGc/cAc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67196604	67196604	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	89	457	0	ENST00000312629.5:c.133T>C	p.Tyr45His	p.Y45H	ENST00000312629	NM_003952.2	45	Tat/Cat																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202569	67202569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	223	597	1	ENST00000312629.5:c.1378G>A	p.Ala460Thr	p.A460T	ENST00000312629	NM_003952.2	460	Gcc/Acc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	156	462	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	117	450	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	246	781	7	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478777	56478777	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	175	409	0	ENST00000267101.3:c.235-2A>C		p.X79_splice	ENST00000267101	NM_001982.3	79																																																																																
SH2B3	10019	MSKCC	GRCh37	12	111884621	111884621	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	108	458	0	ENST00000341259.2:c.797T>C	p.Leu266Pro	p.L266P	ENST00000341259	NM_005475.2	266	cTt/cCt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43738624	43738624	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	195	537	0	ENST00000382044.4:c.3001A>T	p.Thr1001Ser	p.T1001S	ENST00000382044	NM_001141980.1	1001	Act/Tct																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2096132	2096133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs763525759		P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	132	496	0	ENST00000219066.1:c.374dup	p.Val127GlyfsTer43	p.V127Gfs*43	ENST00000219066	NM_002528.5	125	cca/ccCa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23649273	23649273	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs200048921		P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	117	335	0	ENST00000261584.4:c.109C>T	p.Arg37Cys	p.R37C	ENST00000261584	NM_024675.3	37	Cgt/Tgt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011137	12011137	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	112	380	0	ENST00000353533.5:c.544T>C	p.Ser182Pro	p.S182P	ENST00000353533	NM_003010.3	182	Tct/Cct																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	141	578	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59857641	59857641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	117	292	0	ENST00000259008.2:c.1916A>G	p.His639Arg	p.H639R	ENST00000259008	NM_032043.2	639	cAt/cGt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56381342	56381342	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	78	262	0	ENST00000348428.3:c.985+1G>C		p.X329_splice	ENST00000348428	NM_006785.3	329																																																																																
TCF3	6929	MSKCC	GRCh37	19	1650237	1650237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	221	611	1	ENST00000344749.5:c.11C>T	p.Pro4Leu	p.P4L	ENST00000344749	NM_001136139.2	4	cCg/cTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212055	5212055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	185	639	3	ENST00000357368.4:c.4976G>A	p.Arg1659His	p.R1659H	ENST00000357368	NM_002850.3	1659	cGc/cAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130286	11130286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	175	478	0	ENST00000344626.4:c.2525G>A	p.Arg842Gln	p.R842Q	ENST00000344626	NM_003072.3	842	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211549	36211549	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	59	552	0	ENST00000222270.7:c.1304del	p.Pro435GlnfsTer40	p.P435Qfs*40	ENST00000222270	NM_014727.1	434	Ccc/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224339	36224340	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	204	744	0	ENST00000222270.7:c.6895dupC	p.Arg2299ProfsTer4	p.R2299Pfs*4	ENST00000222270	NM_014727.1	2297	gcc/gCcc																																																																															
CASP8	841	MSKCC	GRCh37	2	202137404	202137404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	30	377	0	ENST00000358485.4:c.632T>C	p.Leu211Pro	p.L211P	ENST00000358485	NM_001080125.1	211	cTg/cCg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793431	242793431	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376257658		P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	168	588	0	ENST00000334409.5:c.646G>A	p.Val216Met	p.V216M	ENST00000334409	NM_005018.2	216	Gtg/Atg																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62321659	62321659	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	51	541	0	ENST00000508582.2:c.2350G>C	p.Ala784Pro	p.A784P	ENST00000508582		784	Gcc/Ccc																																																																															
EP300	2033	MSKCC	GRCh37	22	41572357	41572357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	188	553	1	ENST00000263253.7:c.4886C>T	p.Ala1629Val	p.A1629V	ENST00000263253	NM_001429.3	1629	gCg/gTg																																																																															
ATR	545	MSKCC	GRCh37	3	142261565	142261565	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	63	466	0	ENST00000350721.4:c.3392del	p.Leu1131TrpfsTer9	p.L1131Wfs*9	ENST00000350721	NM_001184.3	1131	tTg/tg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38963105	38963105	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	37	301	0	ENST00000357387.3:c.1439A>G	p.His480Arg	p.H480R	ENST00000357387	NM_152756.3	480	cAt/cGt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	108	343	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																															
APC	324	MSKCC	GRCh37	5	112164663	112164664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	88	284	0	ENST00000257430.4:c.1742dupA	p.Glu582GlyfsTer20	p.E582Gfs*20	ENST00000257430	NM_000038.5	579	-/A																																																																															
APC	324	MSKCC	GRCh37	5	112170861	112170861	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	125	459	0	ENST00000257430.4:c.1957A>G	p.Arg653Gly	p.R653G	ENST00000257430	NM_000038.5	653	Agg/Ggg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	104	280	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671396	30671396	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	177	514	0	ENST00000376406.3:c.5562+2T>C		p.X1854_splice	ENST00000376406	NM_014641.2	1854																																																																																
FYN	2534	MSKCC	GRCh37	6	112035565	112035565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	98	337	0	ENST00000368678.4:c.329A>G	p.Gln110Arg	p.Q110R	ENST00000368678		110	cAa/cGa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6043355	6043355	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188006077		P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	155	188	4	ENST00000265849.7:c.319C>T	p.Arg107Trp	p.R107W	ENST00000265849	NM_000535.5	107	Cgg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453150	140453150	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	108	426	0	ENST00000288602.6:c.1785T>G	p.Phe595Leu	p.F595L	ENST00000288602	NM_004333.4	595	ttT/ttG																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187222	38187222	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	214	802	2	ENST00000317025.8:c.1255del	p.Thr419ProfsTer8	p.T419Pfs*8	ENST00000317025	NM_023034.1	419	Acc/cc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372206	55372206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	134	390	2	ENST00000297316.4:c.896C>T	p.Ala299Val	p.A299V	ENST00000297316	NM_022454.3	299	gCg/gTg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	172	599	2	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
LYN	4067	MSKCC	GRCh37	8	56879458	56879458	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	95	513	0	ENST00000519728.1:c.973+2T>C		p.X325_splice	ENST00000519728	NM_002350.3	325																																																																																
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	221	772	0	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932804	39932804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	234	327	0	ENST00000378444.4:c.1795G>T	p.Gly599Cys	p.G599C	ENST00000378444	NM_001123385.1	599	Ggc/Tgc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099982	157099987	+	inframe_deletion	In_Frame_Del	DEL	GGCGGC	GGCGGC	-			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	56	266	0	ENST00000346085.5:c.939_944delCGGCGG	p.Gly318_Gly319del	p.G318_G319del	ENST00000346085	NM_020732.3	307	GGCGGC/-																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0031186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	84	485	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	102	591	0	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	86	684	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0031186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	71	753	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118924	115118925	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0031186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	66	338	0	ENST00000257566.3:c.416_417del	p.Arg139MetfsTer6	p.R139Mfs*6	ENST00000257566	NM_016569.3	139	aGA/a																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056172	26056172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	38	485	0	ENST00000343677.2:c.485C>T	p.Ala162Val	p.A162V	ENST00000343677	NM_005319.3	162	gCc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0031188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	241	582	2	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0031188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	266	504	6	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0031188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	237	503	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112170813	112170813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	363	681	5	ENST00000257430.4:c.1909G>A	p.Gly637Arg	p.G637R	ENST00000257430	NM_000038.5	637	Ggg/Agg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0031188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	541	479	5	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123276974	123276974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	219	419	2	ENST00000358487.5:c.943G>A	p.Ala315Thr	p.A315T	ENST00000358487	NM_000141.4	315	Gcc/Acc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120132	70120133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0031188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	126	185	0	ENST00000245479.2:c.1137_1138dupGC	p.His380ArgfsTer4	p.H380Rfs*4	ENST00000245479	NM_000346.3	378	-/GC																																																																															
BIRC3	330	MSKCC	GRCh37	11	102206715	102206715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	261	463	4	ENST00000263464.3:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000263464	NM_001165.4	448	cGg/cAg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21619857	21619857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	720	488	3	ENST00000382592.4:c.309G>A	p.Met103Ile	p.M103I	ENST00000382592	NM_014572.2	103	atG/atA																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436025	56436025	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs929720505		P-0031188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	266	497	3	ENST00000407977.2:c.1112G>A	p.Arg371Gln	p.R371Q	ENST00000407977		371	cGa/cAa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119787	70119788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	461	688	6	ENST00000245479.2:c.790dup	p.Arg264LysfsTer32	p.R264Kfs*32	ENST00000245479	NM_000346.3	263	-/A																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	237	485	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285455	38285455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	77	563	0	ENST00000425967.3:c.698G>C	p.Arg233Thr	p.R233T	ENST00000425967	NM_001174067.1	233	aGa/aCa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040683	47040683	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	191	321	0	ENST00000329236.7:c.1084C>T	p.Gln362Ter	p.Q362*	ENST00000329236	NM_001204466.1	362	Cag/Tag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741860	145741860	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	110	657	0	ENST00000428558.2:c.643G>C	p.Glu215Gln	p.E215Q	ENST00000428558	NM_004260.3	215	Gag/Cag																																																																															
CDK8	1024	MSKCC	GRCh37	13	26975422	26975422	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	67	401	0	ENST00000381527.3:c.1048C>G	p.Gln350Glu	p.Q350E	ENST00000381527	NM_001260.1	350	Caa/Gaa																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33430490	33430490	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	251	655	0	ENST00000335858.7:c.314G>T	p.Gly105Val	p.G105V	ENST00000335858	NM_133629.2	105	gGa/gTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419873	41419873	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	33	521	0	ENST00000373198.4:c.448G>C	p.Glu150Gln	p.E150Q	ENST00000373198	NM_133170.3	150	Gag/Cag																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42839810	42839810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	72	401	0	ENST00000398585.3:c.1429G>A	p.Asp477Asn	p.D477N	ENST00000398585	NM_001135099.1	477	Gac/Aac																																																																															
ATR	545	MSKCC	GRCh37	3	142217448	142217448	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	65	428	0	ENST00000350721.4:c.5549A>G	p.Tyr1850Cys	p.Y1850C	ENST00000350721	NM_001184.3	1850	tAt/tGt																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374909	149374909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	109	519	0	ENST00000360632.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000360632	NM_015472.4	62	tCg/tTg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673448	30673448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	133	494	1	ENST00000376406.3:c.3512C>T	p.Ser1171Phe	p.S1171F	ENST00000376406	NM_014641.2	1171	tCc/tTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518003	8518003	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	265	404	0	ENST00000356435.5:c.1388T>A	p.Val463Asp	p.V463D	ENST00000356435		463	gTc/gAc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321382	1321382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	153	455	1	ENST00000381566.1:c.373G>T	p.Val125Leu	p.V125L	ENST00000381566		125	Gtg/Ttg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913164	39913164	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	125	148	0	ENST00000378444.4:c.4951A>G	p.Asn1651Asp	p.N1651D	ENST00000378444	NM_001123385.1	1651	Aac/Gac																																																																															
BTK	695	MSKCC	GRCh37	X	100615625	100615625	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	364	272	0	ENST00000308731.7:c.707G>T	p.Arg236Leu	p.R236L	ENST00000308731	NM_000061.2	236	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	104	648	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
APC	324	MSKCC	GRCh37	5	112176042	112176046	+	frameshift_variant	Frame_Shift_Del	DEL	CAACA	CAACA	ACT			P-0031192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	75	510	1	ENST00000257430.4:c.4751_4755delinsACT	p.Pro1584HisfsTer2	p.P1584Hfs*2	ENST00000257430	NM_000038.5	1584	cCAACA/cACT																																																																															
RAD50	10111	MSKCC	GRCh37	5	131977918	131977918	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	88	615	0	ENST00000265335.6:c.3801C>G	p.Ile1267Met	p.I1267M	ENST00000265335		1267	atC/atG																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992697	68992697	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	109	711	0	ENST00000288368.4:c.1662C>G	p.Phe554Leu	p.F554L	ENST00000288368	NM_024870.2	554	ttC/ttG																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248093	110248093	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	154	553	0	ENST00000374672.4:c.1379A>G	p.Lys460Arg	p.K460R	ENST00000374672	NM_004235.4	460	aAa/aGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	54	507	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578476	7578477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGTGT			P-0031200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	60	759	0	ENST00000269305.4:c.453_454insACACC	p.Pro152ThrfsTer20	p.P152Tfs*20	ENST00000269305	NM_001126112.2	151	-/ACACC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0031205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	149	779	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981292	201981292	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	162	648	0	ENST00000359651.3:c.371A>T	p.Gln124Leu	p.Q124L	ENST00000359651		124	cAg/cTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32932028	32932033	+	inframe_deletion	In_Frame_Del	DEL	CTCCAA	CTCCAA	-			P-0031205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	90	467	0	ENST00000380152.3:c.7767_7772del	p.Ser2590_Asn2591del	p.S2590_N2591del	ENST00000380152		2589	ccCTCCAAt/cct																																																																															
REL	5966	MSKCC	GRCh37	2	61149152	61149152	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	53	486	1	ENST00000295025.8:c.1342A>T	p.Arg448Ter	p.R448*	ENST00000295025	NM_002908.2	448	Aga/Tga																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098935	178098935	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	98	391	0	ENST00000397062.3:c.110T>C	p.Phe37Ser	p.F37S	ENST00000397062	NM_006164.4	37	tTt/tCt																																																																															
CASP8	841	MSKCC	GRCh37	2	202149566	202149566	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	245	523	0	ENST00000358485.4:c.1007T>A	p.Leu336His	p.L336H	ENST00000358485	NM_001080125.1	336	cTt/cAt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71096085	71096093	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACGCATACC	ACGCATACC	-			P-0031205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	49	310	0	ENST00000318789.4:c.664_664+8del		p.X222_splice	ENST00000318789	NM_032682.5	222																																																																																
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	231	655	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180051053	180051053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	203	566	1	ENST00000261937.6:c.1430G>A	p.Arg477Gln	p.R477Q	ENST00000261937	NM_182925.4	477	cGg/cAg																																																																															
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	84	457	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247367	153247367	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	177	350	0	ENST00000281708.4:c.1435C>T	p.Arg479Ter	p.R479*	ENST00000281708	NM_033632.3	479	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	81	364	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732996	30732996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934869		P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	148	462	1	ENST00000359013.4:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000359013	NM_001024847.2	562	Cgc/Tgc																																																																															
TERT	7015	MSKCC	GRCh37	5	1254510	1254510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	169	672	0	ENST00000310581.5:c.3268G>A	p.Val1090Met	p.V1090M	ENST00000310581	NM_198253.2	1090	Gtg/Atg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053023	180053023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	189	688	2	ENST00000261937.6:c.1267delC	p.Gln423ArgfsTer70	p.Q423Rfs*70	ENST00000261937	NM_182925.4	423	Cag/ag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	196	485	2	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
B2M	567	MSKCC	GRCh37	15	45007871	45007872	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	137	460	0	ENST00000558401.1:c.319_320delTT	p.Leu107ValfsTer7	p.L107Vfs*7	ENST00000558401	NM_004048.2	106	acTTtg/actg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	99	688	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	51	774	4	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588927	67588927	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	20	329	0	ENST00000274335.5:c.1020-2A>G		p.X340_splice	ENST00000274335		340																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49445203	49445203	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	75	671	1	ENST00000301067.7:c.2263delC	p.Arg755GlyfsTer175	p.R755Gfs*175	ENST00000301067	NM_003482.3	755	Cgg/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7572929	7572929	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	169	521	0	ENST00000269305.4:c.1180T>C	p.Ter394ArgextTer9	p.*394Rext*9	ENST00000269305	NM_001126112.2	394	Tga/Cga																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729609	41729609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	174	497	0	ENST00000242208.4:c.920G>A	p.Arg307Gln	p.R307Q	ENST00000242208	NM_002192.2	307	cGg/cAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831936	72831936	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181722888		P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	170	718	2	ENST00000268489.5:c.4645G>A	p.Val1549Ile	p.V1549I	ENST00000268489	NM_006885.3	1549	Gtc/Atc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228119	36228119	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201885107		P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	168	605	0	ENST00000222270.7:c.7505C>T	p.Pro2502Leu	p.P2502L	ENST00000222270	NM_014727.1	2502	cCg/cTg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45805916	45805916	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	28	542	0	ENST00000372115.3:c.11T>G	p.Leu4Arg	p.L4R	ENST00000372115	NM_001048171.1	4	cTc/cGc																																																																															
SDHC	6391	MSKCC	GRCh37	1	161326485	161326485	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	51	535	0	ENST00000367975.2:c.260T>C	p.Met87Thr	p.M87T	ENST00000367975	NM_003001.3	87	aTg/aCg																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724750	112724750	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	157	519	1	ENST00000369452.4:c.638del	p.Asn213ThrfsTer33	p.N213Tfs*33	ENST00000369452	NM_007373.3	212	Aaa/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398283	+	missense_variant	Missense_Mutation	DNP	CA	CA	GG			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	230	544	0	ENST00000256078.4:c.36_37delinsCC	p.Gly13Arg	p.G13R	ENST00000256078	NM_033360.2	12	ggTGgc/ggCCgc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487946	56487946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	63	638	0	ENST00000267101.3:c.1677G>A	p.Met559Ile	p.M559I	ENST00000267101	NM_001982.3	559	atG/atA																																																																															
POLE	5426	MSKCC	GRCh37	12	133218407	133218407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	28	626	0	ENST00000320574.5:c.5204C>T	p.Ala1735Val	p.A1735V	ENST00000320574	NM_006231.2	1735	gCc/gTc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562955	21562955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	85	510	0	ENST00000382592.4:c.964G>A	p.Gly322Ser	p.G322S	ENST00000382592	NM_014572.2	322	Ggt/Agt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32890628	32890628	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	22	397	1	ENST00000380152.3:c.36del	p.Phe12LeufsTer13	p.F12Lfs*13	ENST00000380152		11	Ttt/tt																																																																															
RB1	5925	MSKCC	GRCh37	13	48878100	48878100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	121	96	0	ENST00000267163.4:c.52G>A	p.Ala18Thr	p.A18T	ENST00000267163	NM_000321.2	18	Gcg/Acg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2105401	2105401	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	125	519	0	ENST00000219476.3:c.482-2A>G		p.X161_splice	ENST00000219476	NM_000548.3	161																																																																																
CDK12	51755	MSKCC	GRCh37	17	37627608	37627608	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	183	669	0	ENST00000447079.4:c.1523T>C	p.Leu508Pro	p.L508P	ENST00000447079	NM_015083.1	508	cTg/cCg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214636	5214636	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs532712500		P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	69	721	1	ENST00000357368.4:c.4430G>A	p.Arg1477His	p.R1477H	ENST00000357368	NM_002850.3	1477	cGt/cAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5215309	5215309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	87	515	0	ENST00000357368.4:c.4309C>T	p.Pro1437Ser	p.P1437S	ENST00000357368	NM_002850.3	1437	Ccc/Tcc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098482	11098482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	19	327	0	ENST00000344626.4:c.1000G>A	p.Gly334Arg	p.G334R	ENST00000344626	NM_003072.3	334	Ggg/Agg																																																																															
AKT2	208	MSKCC	GRCh37	19	40747882	40747882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	186	608	0	ENST00000392038.2:c.536C>T	p.Ala179Val	p.A179V	ENST00000392038	NM_001626.4	179	gCc/gTc																																																																															
ALK	238	MSKCC	GRCh37	2	30143058	30143058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	25	601	0	ENST00000389048.3:c.468del	p.Glu160ArgfsTer26	p.E160Rfs*26	ENST00000389048	NM_004304.4	156	ggG/gg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662010	227662010	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	87	638	0	ENST00000305123.5:c.1445A>G	p.His482Arg	p.H482R	ENST00000305123	NM_005544.2	482	cAc/cGc																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45657087	45657087	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	33	343	0	ENST00000407780.3:c.69G>T	p.Lys23Asn	p.K23N	ENST00000407780	NM_001283052.1	23	aaG/aaT																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191511	185191511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	46	616	0	ENST00000265026.3:c.2392C>T	p.Pro798Ser	p.P798S	ENST00000265026	NM_004721.4	798	Cct/Tct																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356424	66356424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	158	346	0	ENST00000273854.3:c.1073C>T	p.Pro358Leu	p.P358L	ENST00000273854	NM_004439.5	358	cCc/cTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153271215	153271215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	90	393	0	ENST00000281708.4:c.563G>A	p.Cys188Tyr	p.C188Y	ENST00000281708	NM_033632.3	188	tGc/tAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168740	56168740	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	294	492	1	ENST00000399503.3:c.1594C>T	p.Arg532Ter	p.R532*	ENST00000399503	NM_005921.1	532	Cga/Tga																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502612	149502612	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	80	315	0	ENST00000261799.4:c.2176del	p.Leu726CysfsTer7	p.L726Cfs*7	ENST00000261799	NM_002609.3	726	Ctg/tg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324916	31324917	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	147	471	0	ENST00000412585.2:c.19dup	p.Arg7ProfsTer92	p.R7Pfs*92	ENST00000412585	NM_005514.6	7	cga/cCga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527947	157527947	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	68	575	0	ENST00000346085.5:c.5672A>G	p.Asp1891Gly	p.D1891G	ENST00000346085	NM_020732.3	1891	gAc/gGc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450364	50450364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	182	554	2	ENST00000331340.3:c.548G>A	p.Arg183His	p.R183H	ENST00000331340	NM_006060.4	183	cGc/cAc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468260	50468260	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	70	589	0	ENST00000331340.3:c.1495A>G	p.Ser499Gly	p.S499G	ENST00000331340	NM_006060.4	499	Agc/Ggc																																																																															
BRAF	673	MSKCC	GRCh37	7	140534466	140534466	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	102	549	0	ENST00000288602.6:c.447del	p.Lys150SerfsTer32	p.K150Sfs*32	ENST00000288602	NM_004333.4	149	ccC/cc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874078	151874078	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	128	563	0	ENST00000262189.6:c.8460T>A	p.Asn2820Lys	p.N2820K	ENST00000262189	NM_170606.2	2820	aaT/aaA																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126697	5126697	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	150	387	0	ENST00000381652.3:c.3305T>C	p.Met1102Thr	p.M1102T	ENST00000381652	NM_004972.3	1102	aTg/aCg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933031	39933031	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	232	739	0	ENST00000378444.4:c.1568A>G	p.Lys523Arg	p.K523R	ENST00000378444	NM_001123385.1	523	aAa/aGa																																																																															
MED12	9968	MSKCC	GRCh37	X	70353061	70353061	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	30	438	0	ENST00000374080.3:c.4616T>C	p.Leu1539Pro	p.L1539P	ENST00000374080		1539	cTg/cCg																																																																															
ATRX	546	MSKCC	GRCh37	X	76855286	76855286	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	16	376	0	ENST00000373344.5:c.5701T>C	p.Tyr1901His	p.Y1901H	ENST00000373344	NM_000489.3	1901	Tat/Cat																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0006358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	188	321	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151902290	151902290	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1301632462		P-0006358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	27	64	0	ENST00000262189.6:c.3862C>T	p.Arg1288Trp	p.R1288W	ENST00000262189	NM_170606.2	1288	Cgg/Tgg																																																																															
BCL6	604	MSKCC	GRCh37	3	187447774	187447774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	109	234	0	ENST00000232014.4:c.419G>A	p.Arg140His	p.R140H	ENST00000232014	NM_001130845.1	140	cGt/cAt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513012	106513012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	126	310	0	ENST00000359195.3:c.2026G>A	p.Ala676Thr	p.A676T	ENST00000359195	NM_002649.2	676	Gcc/Acc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0031081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	220	443	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RB1	5925	MSKCC	GRCh37	13	48919295	48919295	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	68	189	0	ENST00000267163.4:c.460A>T	p.Lys154Ter	p.K154*	ENST00000267163	NM_000321.2	154	Aag/Tag																																																																															
JAK2	3717	MSKCC	GRCh37	9	5050781	5050781	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	117	389	1	ENST00000381652.3:c.564A>T	p.Arg188Ser	p.R188S	ENST00000381652	NM_004972.3	188	agA/agT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	99	372	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579383	7579383	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	211	548	0	ENST00000269305.4:c.304del	p.Thr102ProfsTer21	p.T102Pfs*21	ENST00000269305	NM_001126112.2	102	Acc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0031088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	384	477	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004217	150004217	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0031088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	71	232	0	ENST00000253339.5:c.2008C>T	p.Arg670Trp	p.R670W	ENST00000253339		670	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0031088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	128	305	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ALK	238	MSKCC	GRCh37	2	29416659	29416659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	102	307	0	ENST00000389048.3:c.4294C>T	p.Arg1432Trp	p.R1432W	ENST00000389048	NM_004304.4	1432	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112170865	112170865	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	T			P-0031088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	151	321	0	ENST00000257430.4:c.1958+3A>T		p.X653_splice	ENST00000257430	NM_000038.5	653																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	79	388	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	124	287	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	54	433	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
B2M	567	MSKCC	GRCh37	15	45007620	45007620	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs111947448		P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	37	223	0	ENST00000558401.1:c.68-1G>T		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	82	610	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023598	31023598	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200702600		P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	77	563	0	ENST00000375687.4:c.3083C>T	p.Ser1028Leu	p.S1028L	ENST00000375687	NM_015338.5	1028	tCg/tTg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	35	340	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753988	57753988	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	48	303	1	ENST00000274289.3:c.636del	p.Phe212LeufsTer8	p.F212Lfs*8	ENST00000274289	NM_006622.3	212	ttT/tt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477184	67477184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	66	385	0	ENST00000327367.4:c.991G>A	p.Val331Ile	p.V331I	ENST00000327367	NM_005902.3	331	Gtc/Atc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678783	52678784	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	54	298	0	ENST00000394830.3:c.835dupA	p.Ile279AsnfsTer8	p.I279Nfs*8	ENST00000394830	NM_018313.4	279	ata/aAta																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	89	468	1	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																															
ATRX	546	MSKCC	GRCh37	X	76938230	76938230	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	94	556	5	ENST00000373344.5:c.2518delA	p.Arg840GlufsTer29	p.R840Efs*29	ENST00000373344	NM_000489.3	840	Aga/ga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3830859	3830859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	64	477	0	ENST00000262367.5:c.1697C>T	p.Ser566Phe	p.S566F	ENST00000262367	NM_004380.2	566	tCc/tTc																																																																															
B2M	567	MSKCC	GRCh37	15	45007689	45007690	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	75	360	0	ENST00000558401.1:c.137_138del	p.Tyr46CysfsTer10	p.Y46Cfs*10	ENST00000558401	NM_004048.2	46	TAt/t																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44928873	44928873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	67	377	0	ENST00000377967.4:c.1973G>A	p.Arg658Gln	p.R658Q	ENST00000377967	NM_021140.2	658	cGa/cAa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438238	56438238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	109	545	0	ENST00000407977.2:c.755G>A	p.Cys252Tyr	p.C252Y	ENST00000407977		252	tGc/tAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	359972	359972	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	83	536	0	ENST00000262320.3:c.1116+1G>A		p.X372_splice	ENST00000262320	NM_003502.3	372																																																																																
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	90	545	2	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	113	719	4	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509883	187509883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	34	305	0	ENST00000441802.2:c.13630G>A	p.Ala4544Thr	p.A4544T	ENST00000441802	NM_005245.3	4544	Gcc/Acc																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61213502	61213502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	87	423	3	ENST00000301761.2:c.460C>T	p.Arg154Cys	p.R154C	ENST00000301761	NM_017841.2	154	Cgt/Tgt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970916	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	117	622	0	ENST00000265081.6:c.1147_1148del	p.Lys383GlyfsTer20	p.K383Gfs*20	ENST00000265081	NM_002439.4	381	AAa/a																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748488	162748488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	65	311	0	ENST00000367921.3:c.2402C>T	p.Thr801Ile	p.T801I	ENST00000367921	NM_006182.2	801	aCt/aTt																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226253478	226253478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	48	289	1	ENST00000366813.1:c.250C>T	p.Arg84Cys	p.R84C	ENST00000366813		84	Cgc/Tgc																																																																															
FH	2271	MSKCC	GRCh37	1	241680510	241680510	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	168	433	1	ENST00000366560.3:c.239A>T	p.Lys80Met	p.K80M	ENST00000366560	NM_000143.3	80	aAg/aTg																																																																															
HRAS	3265	MSKCC	GRCh37	11	533578	533578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	89	601	0	ENST00000311189.7:c.325G>A	p.Val109Met	p.V109M	ENST00000311189		109	Gtg/Atg																																																																															
RB1	5925	MSKCC	GRCh37	13	49039408	49039408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	106	570	1	ENST00000267163.4:c.2393G>A	p.Arg798Gln	p.R798Q	ENST00000267163	NM_000321.2	798	cGg/cAg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43713277	43713277	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200691218		P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	137	734	1	ENST00000382044.4:c.4196C>T	p.Thr1399Met	p.T1399M	ENST00000382044	NM_001141980.1	1399	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829866	72829866	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	109	633	0	ENST00000268489.5:c.6715T>C	p.Trp2239Arg	p.W2239R	ENST00000268489	NM_006885.3	2239	Tgg/Cgg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89337247	89337247	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	81	462	0	ENST00000301030.4:c.7784A>G	p.Asp2595Gly	p.D2595G	ENST00000301030	NM_001256183.1	2595	gAt/gGt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346789	89346789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	31	405	0	ENST00000301030.4:c.6161C>T	p.Ala2054Val	p.A2054V	ENST00000301030	NM_001256183.1	2054	gCt/gTt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89354986	89354986	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	103	614	1	ENST00000301030.4:c.694C>A	p.Leu232Ile	p.L232I	ENST00000301030	NM_001256183.1	232	Cta/Ata																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39570501	39570501	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	36	246	0	ENST00000262039.4:c.697A>G	p.Ile233Val	p.I233V	ENST00000262039	NM_002647.2	233	Att/Gtt																																																																															
INSR	3643	MSKCC	GRCh37	19	7267482	7267482	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	94	530	0	ENST00000302850.5:c.526A>G	p.Lys176Glu	p.K176E	ENST00000302850	NM_000208.2	176	Aaa/Gaa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600462	10600462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	134	617	1	ENST00000171111.5:c.1393G>A	p.Val465Met	p.V465M	ENST00000171111	NM_203500.1	465	Gtg/Atg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281176	15281176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	92	811	1	ENST00000263388.2:c.5080C>T	p.Arg1694Trp	p.R1694W	ENST00000263388	NM_000435.2	1694	Cgg/Tgg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354212	15354212	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201423321		P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	93	681	1	ENST00000263377.2:c.2668G>A	p.Val890Met	p.V890M	ENST00000263377	NM_058243.2	890	Gtg/Atg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17384923	17384923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	86	695	0	ENST00000359435.4:c.473G>A	p.Gly158Asp	p.G158D	ENST00000359435	NM_001033549.1	158	gGc/gAc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158634731	158634731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	65	346	0	ENST00000263640.3:c.455G>A	p.Arg152His	p.R152H	ENST00000263640	NM_001105.4	152	cGc/cAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542317	187542317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	64	341	0	ENST00000441802.2:c.5423T>C	p.Val1808Ala	p.V1808A	ENST00000441802	NM_005245.3	1808	gTa/gCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628452	187628452	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	155	659	1	ENST00000441802.2:c.2530G>T	p.Val844Phe	p.V844F	ENST00000441802	NM_005245.3	844	Gtt/Ttt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149439417	149439417	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	82	516	0	ENST00000286301.3:c.1978C>G	p.Leu660Val	p.L660V	ENST00000286301	NM_005211.3	660	Ctg/Gtg																																																																															
CCND3	896	MSKCC	GRCh37	6	41904993	41904993	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	79	495	0	ENST00000372991.4:c.554T>G	p.Phe185Cys	p.F185C	ENST00000372991	NM_001760.3	185	tTt/tGt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157511292	157511292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	63	431	1	ENST00000346085.5:c.3810G>A	p.Met1270Ile	p.M1270I	ENST00000346085	NM_020732.3	1270	atG/atA																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527835	157527835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	44	461	0	ENST00000346085.5:c.5560G>A	p.Gly1854Ser	p.G1854S	ENST00000346085	NM_020732.3	1854	Ggt/Agt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509082	106509082	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	82	550	0	ENST00000359195.3:c.1076G>T	p.Arg359Leu	p.R359L	ENST00000359195	NM_002649.2	359	cGc/cTc																																																																															
SYK	6850	MSKCC	GRCh37	9	93606184	93606184	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201301123		P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	64	403	0	ENST00000375746.1:c.4G>A	p.Ala2Thr	p.A2T	ENST00000375746	NM_001174167.1	2	Gcc/Acc																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226252059	226252059	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026843-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			185	146	247	0	ENST00000366813.1:c.7C>G	p.Arg3Gly	p.R3G	ENST00000366813		3	Cgt/Ggt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572567	64572571	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGT	GGCGT	-			P-0026843-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			153	211	517	0	ENST00000337652.1:c.1300_1304del	p.Thr434CysfsTer18	p.T434Cfs*18	ENST00000337652	NM_130803.2	434	ACGCCt/t																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396711	396712	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0026843-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			93	176	460	0	ENST00000262320.3:c.314_315del	p.Phe105SerfsTer26	p.F105Sfs*26	ENST00000262320	NM_003502.3	105	tTC/t																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66525009	66525009	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0026843-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			42	154	231	0	ENST00000358598.2:c.770-2A>C		p.X257_splice	ENST00000358598	NM_212471.2	257																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0031023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	221	369	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0031023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1318	99	648	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17951089	17951089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	250	662	1	ENST00000458235.1:c.1204C>T	p.Arg402Cys	p.R402C	ENST00000458235	NM_000215.3	402	Cgc/Tgc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962899	2962899	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3735134		P-0031023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	231	733	0	ENST00000396946.4:c.2009C>T	p.Thr670Met	p.T670M	ENST00000396946	NM_032415.4	670	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112176063	112176064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	48	321	0	ENST00000257430.4:c.4778dupA	p.Pro1594AlafsTer38	p.P1594Afs*38	ENST00000257430	NM_000038.5	1591	gca/gcAa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771831816		P-0031062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	38	322	1	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258163	16258163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144013241		P-0031062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	324	489	0	ENST00000375759.3:c.5428C>T	p.Pro1810Ser	p.P1810S	ENST00000375759	NM_015001.2	1810	Cca/Tca																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434508	110434508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	217	408	1	ENST00000375856.3:c.3893G>A	p.Gly1298Asp	p.G1298D	ENST00000375856	NM_003749.2	1298	gGc/gAc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383182	42383182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	254	536	0	ENST00000221972.3:c.202C>T	p.Arg68Cys	p.R68C	ENST00000221972	NM_021601.3	68	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	48	319	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SMO	6608	MSKCC	GRCh37	7	128850342	128850342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	75	486	0	ENST00000249373.3:c.1605G>T	p.Trp535Cys	p.W535C	ENST00000249373	NM_005631.4	535	tgG/tgT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118377019	118377019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	53	283	0	ENST00000534358.1:c.10412C>T	p.Ser3471Phe	p.S3471F	ENST00000534358	NM_005933.3	3471	tCc/tTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29490235	29490235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	31	279	0	ENST00000358273.4:c.320C>T	p.Thr107Met	p.T107M	ENST00000358273	NM_001042492.2	107	aCg/aTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39937142	39937142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	89	506	0	ENST00000378444.4:c.41G>T	p.Trp14Leu	p.W14L	ENST00000378444	NM_001123385.1	14	tGg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	62	370	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	73	496	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14014039	14014039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	51	356	0	ENST00000311895.7:c.17C>T	p.Pro6Leu	p.P6L	ENST00000311895	NM_005236.2	6	cCg/cTg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662703	117662703	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	72	347	0	ENST00000368508.3:c.4762A>G	p.Lys1588Glu	p.K1588E	ENST00000368508	NM_002944.2	1588	Aaa/Gaa																																																																															
BTK	695	MSKCC	GRCh37	X	100608978	100608978	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0031096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	59	360	0	ENST00000308731.7:c.1632-2A>T		p.X544_splice	ENST00000308731	NM_000061.2	544																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71944501	71944501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	152	532	0	ENST00000298229.2:c.2057C>T	p.Pro686Leu	p.P686L	ENST00000298229	NM_001567.3	686	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	251	574	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717661	89717661	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	182	422	0	ENST00000371953.3:c.686C>G	p.Ser229Ter	p.S229*	ENST00000371953	NM_000314.4	229	tCa/tGa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	109	326	0	ENST00000397062.3:c.92G>C	p.Gly31Ala	p.G31A	ENST00000397062	NM_006164.4	31	gGa/gCa																																																																															
ATR	545	MSKCC	GRCh37	3	142259767	142259767	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	69	405	0	ENST00000350721.4:c.3560A>G	p.Asp1187Gly	p.D1187G	ENST00000350721	NM_001184.3	1187	gAt/gGt																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72076731	72076731	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	216	457	3	ENST00000357731.5:c.766G>C	p.Glu256Gln	p.E256Q	ENST00000357731	NM_173808.2	256	Gaa/Caa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193202178	193202178	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	143	330	0	ENST00000367435.3:c.1210C>G	p.Leu404Val	p.L404V	ENST00000367435	NM_024529.4	404	Cta/Gta																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425119	49425119	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	204	626	0	ENST00000301067.7:c.13369G>T	p.Glu4457Ter	p.E4457*	ENST00000301067	NM_003482.3	4457	Gaa/Taa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28622494	28622494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	175	498	2	ENST00000241453.7:c.1123G>A	p.Ala375Thr	p.A375T	ENST00000241453	NM_004119.2	375	Gcc/Acc																																																																															
RB1	5925	MSKCC	GRCh37	13	49050979	49050979	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	129	283	1	ENST00000267163.4:c.2663G>A	p.Ser888Asn	p.S888N	ENST00000267163	NM_000321.2	888	aGt/aAt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30108097	30108097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	92	471	0	ENST00000331968.5:c.710C>T	p.Ser237Leu	p.S237L	ENST00000331968	NM_002742.2	237	tCa/tTa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554161	63554161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	196	559	0	ENST00000307078.5:c.578C>T	p.Ser193Phe	p.S193F	ENST00000307078	NM_004655.3	193	tCt/tTt																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169977831	169977831	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	119	457	0	ENST00000295797.4:c.298G>C	p.Glu100Gln	p.E100Q	ENST00000295797	NM_002740.5	100	Gaa/Caa																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505322	186505322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	242	319	0	ENST00000323963.5:c.948G>A	p.Met316Ile	p.M316I	ENST00000323963		316	atG/atA																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143067107	143067107	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	131	322	0	ENST00000262992.4:c.1606A>T	p.Ile536Phe	p.I536F	ENST00000262992	NM_001101669.1	536	Att/Ttt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912386	29912420	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGCTCAGGTGGAGAAGGGGTGAAGGGTGGGGTCT	GAGCTCAGGTGGAGAAGGGGTGAAGGGTGGGGTCT	-			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	296	417	0	ENST00000376809.5:c.1008_1012+30del		p.X336_splice	ENST00000376809	NM_002116.7	336																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32166449	32166449	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	442	579	2	ENST00000375023.3:c.4594G>C	p.Glu1532Gln	p.E1532Q	ENST00000375023	NM_004557.3	1532	Gag/Cag																																																																															
SMO	6608	MSKCC	GRCh37	7	128852035	128852035	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	274	654	0	ENST00000249373.3:c.2107C>T	p.Arg703Ter	p.R703*	ENST00000249373	NM_005631.4	703	Cga/Tga																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209270	98209270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	158	554	0	ENST00000331920.6:c.4268G>A	p.Arg1423Lys	p.R1423K	ENST00000331920	NM_000264.3	1423	aGg/aAg																																																																															
CDH1	999	MSKCC	GRCh37	16	68845757	68845757	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	57	278	0	ENST00000261769.5:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000261769	NM_004360.3	335	Cga/Tga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189448	56189448	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	98	402	1	ENST00000399503.3:c.4480C>T	p.Gln1494Ter	p.Q1494*	ENST00000399503	NM_005921.1	1494	Cag/Tag																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912133	50912133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	84	645	1	ENST00000440232.2:c.1867C>T	p.Arg623Trp	p.R623W	ENST00000440232	NM_002691.3	623	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434181	49434181	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	130	728	1	ENST00000301067.7:c.7372C>T	p.Gln2458Ter	p.Q2458*	ENST00000301067	NM_003482.3	2458	Cag/Tag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638911	176638911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	116	503	0	ENST00000439151.2:c.3511C>T	p.Arg1171Cys	p.R1171C	ENST00000439151	NM_022455.4	1171	Cgt/Tgt																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626656	12626656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	62	414	0	ENST00000251849.4:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000251849	NM_002880.3	545	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097808	27097808	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	73	284	0	ENST00000324856.7:c.3397C>G	p.Pro1133Ala	p.P1133A	ENST00000324856	NM_006015.4	1133	Ccc/Gcc																																																																															
SDHC	6391	MSKCC	GRCh37	1	161310403	161310403	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	68	313	0	ENST00000367975.2:c.199A>G	p.Met67Val	p.M67V	ENST00000367975	NM_003001.3	67	Atg/Gtg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805325	89805325	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139478274		P-0031101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	84	432	1	ENST00000389301.3:c.4225C>T	p.Arg1409Trp	p.R1409W	ENST00000389301	NM_000135.2	1409	Cgg/Tgg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217635	7217635	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	59	318	0	ENST00000380728.2:c.292G>T	p.Glu98Ter	p.E98*	ENST00000380728		98	Gaa/Taa																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428294	33428294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	83	401	0	ENST00000335858.7:c.493C>T	p.Leu165Phe	p.L165F	ENST00000335858	NM_133629.2	165	Ctc/Ttc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033771	48033771	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	80	256	0	ENST00000234420.5:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000234420	NM_000179.2	1328	Cag/Tag																																																																															
RAF1	5894	MSKCC	GRCh37	3	12627262	12627262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	53	364	0	ENST00000251849.4:c.1454G>T	p.Gly485Val	p.G485V	ENST00000251849	NM_002880.3	485	gGa/gTa																																																																															
ATR	545	MSKCC	GRCh37	3	142180814	142180814	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	49	318	0	ENST00000350721.4:c.7160G>C	p.Arg2387Thr	p.R2387T	ENST00000350721	NM_001184.3	2387	aGa/aCa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189442	56189442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	96	405	2	ENST00000399503.3:c.4474C>A	p.Gln1492Lys	p.Q1492K	ENST00000399503	NM_005921.1	1492	Caa/Aaa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67575513	67575513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	66	294	0	ENST00000274335.5:c.586C>T	p.Pro196Ser	p.P196S	ENST00000274335		196	Cct/Tct																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520725	176520725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	92	457	2	ENST00000292408.4:c.1468G>A	p.Asp490Asn	p.D490N	ENST00000292408	NM_213647.1	490	Gac/Aac																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858279	27858279	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	75	487	0	ENST00000359303.2:c.292G>C	p.Glu98Gln	p.E98Q	ENST00000359303	NM_003535.2	98	Gag/Cag																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519513	137519513	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	61	263	0	ENST00000367739.4:c.1125G>C	p.Glu375Asp	p.E375D	ENST00000367739	NM_000416.2	375	gaG/gaC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151851496	151851496	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	76	303	0	ENST00000262189.6:c.11995G>C	p.Asp3999His	p.D3999H	ENST00000262189	NM_170606.2	3999	Gac/Cac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8517901	8517901	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0031101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	60	266	0	ENST00000356435.5:c.1490C>G	p.Ser497Ter	p.S497*	ENST00000356435		497	tCa/tGa																																																																															
ABL1	25	MSKCC	GRCh37	9	133759824	133759824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	64	469	0	ENST00000318560.5:c.2147C>T	p.Ser716Phe	p.S716F	ENST00000318560	NM_005157.4	716	tCt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0029444-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			513	104	552	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	103	478	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0030787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	129	599	1	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
CUL3	8452	MSKCC	GRCh37	2	225371691	225371691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	147	609	1	ENST00000264414.4:c.913C>T	p.Arg305Cys	p.R305C	ENST00000264414	NM_003590.4	305	Cgt/Tgt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111688	56112072	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGACGCAGCGGGGAGTGGGACCGGCTTCCAGCCTGTGGCGGTGCCGCCGCCCCACGGAGCCGCGAGCCGCGGCGGCGCCCACCTTACCGAGTCGGTGGCGGCGCCGGACAGCGGCGCCTCGAGTCCCGCAGCGGCCGAGCCCGGGGAGAAGCGGGCGCCCGCCGCCGAGCCGTCTCCTGCAGCGGCCCCCGCCGGGTGAGCAGCACGGCCGGGGTCGCGGCGGGGACTTGGAGAGCGGGCAGAGGGCAATGAATGAACCCCGGGCACCATGCACGGCGTCCCGGGGTTCAGCGCAGCGAGGCTACGCGCCGCTCGCCGGGACCTACGCCCCTGAGCACCCCCCGACCCCTTCGGAGTCGGGCGGCGCCCCGGACCCAGCCTGGGG	GGACGCAGCGGGGAGTGGGACCGGCTTCCAGCCTGTGGCGGTGCCGCCGCCCCACGGAGCCGCGAGCCGCGGCGGCGCCCACCTTACCGAGTCGGTGGCGGCGCCGGACAGCGGCGCCTCGAGTCCCGCAGCGGCCGAGCCCGGGGAGAAGCGGGCGCCCGCCGCCGAGCCGTCTCCTGCAGCGGCCCCCGCCGGGTGAGCAGCACGGCCGGGGTCGCGGCGGGGACTTGGAGAGCGGGCAGAGGGCAATGAATGAACCCCGGGCACCATGCACGGCGTCCCGGGGTTCAGCGCAGCGAGGCTACGCGCCGCTCGCCGGGACCTACGCCCCTGAGCACCCCCCGACCCCTTCGGAGTCGGGCGGCGCCCCGGACCCAGCCTGGGG	-			P-0030787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	84	251	0	ENST00000399503.3:c.289_482+191del		p.X97_splice	ENST00000399503	NM_005921.1	97																																																																																
KMT2C	58508	MSKCC	GRCh37	7	152008973	152008997	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCTGTCTGGGTGCTTACACTTAC	AAGCTGTCTGGGTGCTTACACTTAC	-			P-0030787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	81	447	0	ENST00000262189.6:c.625_649del	p.Val209GlnfsTer44	p.V209Qfs*44	ENST00000262189	NM_170606.2	209	GTAAGTGTAAGCACCCAGACAGCTTca/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578188	7578188	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	89	534	1	ENST00000269305.4:c.661G>T	p.Glu221Ter	p.E221*	ENST00000269305	NM_001126112.2	221	Gag/Tag																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78831591	78831591	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	61	337	1	ENST00000306801.3:c.1400C>T	p.Ala467Val	p.A467V	ENST00000306801	NM_020761.2	467	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0030909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	88	755	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175525	112175525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	49	436	1	ENST00000257430.4:c.4234G>T	p.Gly1412Ter	p.G1412*	ENST00000257430	NM_000038.5	1412	Gga/Tga																																																																															
ALK	238	MSKCC	GRCh37	2	29420420	29420420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	55	656	0	ENST00000389048.3:c.4061G>A	p.Cys1354Tyr	p.C1354Y	ENST00000389048	NM_004304.4	1354	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112128198	112128199	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0030909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	86	645	0	ENST00000257430.4:c.703_704del	p.Leu235ThrfsTer16	p.L235Tfs*16	ENST00000257430	NM_000038.5	234	cTT/c																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737702	145737728	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCACACCTGCCGGAAAGCATGTCAGAT	GCACACCTGCCGGAAAGCATGTCAGAT	-			P-0030909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	85	713	0	ENST00000428558.2:c.3056-21_3061del		p.X1019_splice	ENST00000428558	NM_004260.3	1019																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151902306	151902307	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	T			P-0030909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	28	247	0	ENST00000262189.6:c.3845_3846delinsA	p.Ile1282LysfsTer21	p.I1282Kfs*21	ENST00000262189	NM_170606.2	1282	aTT/aA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	103	622	6	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	76	245	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375120	31375120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	145	784	0	ENST00000328111.2:c.517G>A	p.Asp173Asn	p.D173N	ENST00000328111	NM_006892.3	173	Gac/Aac																																																																															
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	106	573	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																															
MYD88	4615	MSKCC	GRCh37	3	38180207	38180207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	149	563	1	ENST00000396334.3:c.55C>T	p.Pro19Ser	p.P19S	ENST00000396334	NM_002468.4	19	Ccc/Tcc																																																																															
AR	367	MSKCC	GRCh37	X	66766199	66766199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	33	471	0	ENST00000374690.3:c.1211C>T	p.Ala404Val	p.A404V	ENST00000374690	NM_000044.3	404	gCg/gTg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11958295	11958295	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	74	498	0	ENST00000353533.5:c.205C>T	p.Gln69Ter	p.Q69*	ENST00000353533	NM_003010.3	69	Caa/Taa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061517	38061517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	59	355	0	ENST00000250448.2:c.472G>A	p.Asp158Asn	p.D158N	ENST00000250448	NM_004496.3	158	Gac/Aac																																																																															
MSH6	2956	MSKCC	GRCh37	2	48023042	48023042	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	56	386	0	ENST00000234420.5:c.467C>G	p.Ser156Ter	p.S156*	ENST00000234420	NM_000179.2	156	tCa/tGa																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867304	45867304	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1372639983		P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	126	744	1	ENST00000391945.4:c.889G>A	p.Ala297Thr	p.A297T	ENST00000391945	NM_000400.3	297	Gcc/Acc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68939479	68939479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778971988		P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	89	604	0	ENST00000288368.4:c.464G>A	p.Arg155Gln	p.R155Q	ENST00000288368	NM_024870.2	155	cGg/cAg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959106	2959106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	139	737	0	ENST00000396946.4:c.2410C>T	p.Arg804Cys	p.R804C	ENST00000396946	NM_032415.4	804	Cgt/Tgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790090	40790090	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	59	672	2	ENST00000373198.4:c.2641delC	p.Arg881GlyfsTer20	p.R881Gfs*20	ENST00000373198	NM_133170.3	881	Cgg/gg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156834561	156834561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1326	114	897	0	ENST00000524377.1:c.329C>T	p.Ala110Val	p.A110V	ENST00000524377	NM_002529.3	110	gCc/gTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845366	151845366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	131	733	0	ENST00000262189.6:c.13646G>A	p.Arg4549His	p.R4549H	ENST00000262189	NM_170606.2	4549	cGc/cAc																																																																															
ABL1	25	MSKCC	GRCh37	9	133738172	133738172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	66	546	0	ENST00000318560.5:c.572G>A	p.Arg191His	p.R191H	ENST00000318560	NM_005157.4	191	cGc/cAc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210432	2210432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	101	749	0	ENST00000398665.3:c.1039C>T	p.Arg347Cys	p.R347C	ENST00000398665	NM_032482.2	347	Cgc/Tgc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741517	17741517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	116	554	1	ENST00000250003.3:c.188C>T	p.Ser63Leu	p.S63L	ENST00000250003	NM_002478.4	63	tCg/tTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11182095	11182095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	133	704	3	ENST00000361445.4:c.6751C>T	p.Arg2251Trp	p.R2251W	ENST00000361445	NM_004958.3	2251	Cgg/Tgg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9783248	9783248	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	130	731	0	ENST00000377346.4:c.2492C>A	p.Ser831Ter	p.S831*	ENST00000377346	NM_005026.3	831	tCa/tAa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11273592	11273592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	72	543	0	ENST00000361445.4:c.3149G>A	p.Ser1050Asn	p.S1050N	ENST00000361445	NM_004958.3	1050	aGc/aAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023030	27023030	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	11	54	0	ENST00000324856.7:c.136G>T	p.Glu46Ter	p.E46*	ENST00000324856	NM_006015.4	46	Gag/Tag																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981599	101981599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	29	180	0	ENST00000282441.5:c.20C>A	p.Pro7Gln	p.P7Q	ENST00000282441	NM_001130145.2	7	cCg/cAg																																																																															
YAP1	10413	MSKCC	GRCh37	11	102100483	102100483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	111	687	1	ENST00000282441.5:c.1327G>A	p.Asp443Asn	p.D443N	ENST00000282441	NM_001130145.2	443	Gac/Aac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343673	118343673	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	84	547	0	ENST00000534358.1:c.1799C>G	p.Ser600Cys	p.S600C	ENST00000534358	NM_005933.3	600	tCc/tGc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912656	32912656	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	129	726	1	ENST00000380152.3:c.4169del	p.Leu1390TrpfsTer20	p.L1390Wfs*20	ENST00000380152		1388	acT/ac																																																																															
CDH1	999	MSKCC	GRCh37	16	68849522	68849522	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	134	740	0	ENST00000261769.5:c.1426del	p.Asp476MetfsTer5	p.D476Mfs*5	ENST00000261769	NM_004360.3	475	gtG/gt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828389	72828389	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750838080		P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	85	703	1	ENST00000268489.5:c.8192G>A	p.Arg2731Gln	p.R2731Q	ENST00000268489	NM_006885.3	2731	cGg/cAg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217917	7217917	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	81	463	0	ENST00000380728.2:c.95-1G>T		p.X32_splice	ENST00000380728		32																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5265192	5265192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	120	762	1	ENST00000357368.4:c.395C>T	p.Ser132Phe	p.S132F	ENST00000357368	NM_002850.3	132	tCt/tTt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367953	15367953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	125	797	1	ENST00000263377.2:c.1373C>T	p.Pro458Leu	p.P458L	ENST00000263377	NM_058243.2	458	cCg/cTg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99180041	99180041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	103	674	1	ENST00000074304.5:c.1984C>T	p.Pro662Ser	p.P662S	ENST00000074304	NM_001134224.1	662	Ccc/Tcc																																																																															
VHL	7428	MSKCC	GRCh37	3	10188302	10188302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	118	630	0	ENST00000256474.2:c.445G>A	p.Ala149Thr	p.A149T	ENST00000256474	NM_000551.3	149	Gcc/Acc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37090425	37090425	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	113	675	0	ENST00000231790.2:c.2020G>C	p.Glu674Gln	p.E674Q	ENST00000231790	NM_000249.3	674	Gaa/Caa																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940580	49940580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	92	725	0	ENST00000296474.3:c.463G>A	p.Val155Met	p.V155M	ENST00000296474	NM_002447.2	155	Gtg/Atg																																																																															
TP63	8626	MSKCC	GRCh37	3	189586445	189586445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	109	621	1	ENST00000264731.3:c.1069G>A	p.Asp357Asn	p.D357N	ENST00000264731	NM_003722.4	357	Gat/Aat																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382214	152382215	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	103	631	2	ENST00000206249.3:c.1324_1325delinsAA	p.Gly442Lys	p.G442K	ENST00000206249	NM_000125.3	442	GGa/AAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55270273	55270273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1096	151	813	0	ENST00000275493.2:c.3226G>A	p.Ala1076Thr	p.A1076T	ENST00000275493	NM_005228.3	1076	Gcc/Acc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47035947	47035952	+	inframe_deletion	In_Frame_Del	DEL	CCCAAG	CCCAAG	-			P-0030930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	128	792	0	ENST00000329236.7:c.400_405del	p.Pro134_Lys135del	p.P134_K135del	ENST00000329236	NM_001204466.1	132	CCCAAG/-																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0030932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	389	629	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0030932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	309	727	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
IGF2	3481	MSKCC	GRCh37	11	2161479	2161479	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	89	653	0	ENST00000434045.2:c.48A>T	p.Glu16Asp	p.E16D	ENST00000434045	NM_001127598.1	16	gaA/gaT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165832	47165832	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	92	669	0	ENST00000409792.3:c.294T>A	p.Ser98Arg	p.S98R	ENST00000409792	NM_014159.6	98	agT/agA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0030957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	130	491	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	117	433	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0031043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	129	351	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0031043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	101	458	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0031043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	89	253	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
SESN1	27244	MSKCC	GRCh37	6	109311998	109311998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	195	574	0	ENST00000436639.2:c.1274G>A	p.Arg425His	p.R425H	ENST00000436639	NM_014454.2	425	cGc/cAc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300899	137300899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	144	634	2	ENST00000481739.1:c.544C>T	p.Arg182Trp	p.R182W	ENST00000481739	NM_002957.4	182	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0031058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	181	377	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0031058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	67	284	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0031058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	330	558	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112174388	112174388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	19	223	0	ENST00000257430.4:c.3097G>A	p.Asp1033Asn	p.D1033N	ENST00000257430	NM_000038.5	1033	Gat/Aat																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341317	89341317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	52	209	0	ENST00000301030.4:c.7618C>T	p.Arg2540Trp	p.R2540W	ENST00000301030	NM_001256183.1	2540	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175890	112175890	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	23	200	0	ENST00000257430.4:c.4599del	p.Asn1533LysfsTer32	p.N1533Kfs*32	ENST00000257430	NM_000038.5	1533	aaT/aa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2966384	2966384	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	151	538	0	ENST00000396946.4:c.1796T>C	p.Leu599Ser	p.L599S	ENST00000396946	NM_032415.4	599	tTa/tCa																																																																															
MLL3	58508	MSKCC	GRCh37	7	151945516	151945516	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006939-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	197	137	0	ENST00000262189.6:c.2003delA	p.Gln668ArgfsTer3	p.Q668Rfs*3	ENST00000262189	NM_170606.2	668	cAg/cg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390794	139390794	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006939-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	342	497	0	ENST00000277541.6:c.7397delC	p.Thr2466SerfsTer11	p.T2466Sfs*11	ENST00000277541	NM_017617.3	2466	aCg/ag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410452	139410453	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0008385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	402	440	0	ENST00000277541.6:c.1649dupA	p.Tyr550Ter	p.Y550*	ENST00000277541	NM_017617.3	550	tac/taAc																																																																															
PIM1	5292	MSKCC	GRCh37	6	37139184	37139184	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	125	161	0	ENST00000373509.5:c.524T>C	p.Ile175Thr	p.I175T	ENST00000373509	NM_002648.3	175	aTc/aCc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807902	3807902	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	319	392	0	ENST00000262367.5:c.3517C>G	p.Arg1173Gly	p.R1173G	ENST00000262367	NM_004380.2	1173	Cga/Gga																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0013620-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	108	498	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225264		P-0013620-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	61	355	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141515	11141515	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013620-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	226	670	0	ENST00000344626.4:c.3492C>G	p.Asn1164Lys	p.N1164K	ENST00000344626	NM_003072.3	1164	aaC/aaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934578		P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	213	590	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116175	209116175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	65	421	0	ENST00000345146.2:c.101A>G	p.Tyr34Cys	p.Y34C	ENST00000345146	NM_005896.2	34	tAc/tGc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041164	29041164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	90	620	1	ENST00000282397.4:c.264C>A	p.Phe88Leu	p.F88L	ENST00000282397	NM_002019.4	88	ttC/ttA																																																																															
TERT	7015	MSKCC	GRCh37	5	1294537	1294537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	131	274	1	ENST00000310581.5:c.464G>A	p.Arg155His	p.R155H	ENST00000310581	NM_198253.2	155	cGc/cAc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	71873219	71873219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	54	445	3	ENST00000357731.5:c.975C>A	p.Ser325Arg	p.S325R	ENST00000357731	NM_173808.2	325	agC/agA																																																																															
DDR2	4921	MSKCC	GRCh37	1	162737108	162737108	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	91	492	0	ENST00000367921.3:c.1252A>T	p.Ile418Phe	p.I418F	ENST00000367921	NM_006182.2	418	Atc/Ttc																																																																															
RARA	5914	MSKCC	GRCh37	17	38508760	38508760	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	178	472	1	ENST00000254066.5:c.807+1G>T		p.X269_splice	ENST00000254066	NM_000964.3	269																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10600364	10600364	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	234	655	0	ENST00000171111.5:c.1491del	p.Trp497CysfsTer3	p.W497Cfs*3	ENST00000171111	NM_203500.1	497	tgG/tg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190732527	190732527	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	30	344	0	ENST00000441310.2:c.2345T>G	p.Leu782Arg	p.L782R	ENST00000441310	NM_000534.4	782	cTt/cGt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37089163	37089163	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	63	423	2	ENST00000231790.2:c.1885G>T	p.Glu629Ter	p.E629*	ENST00000231790	NM_000249.3	629	Gaa/Taa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180627	32180627	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	184	515	0	ENST00000375023.3:c.2500A>G	p.Thr834Ala	p.T834A	ENST00000375023	NM_004557.3	834	Act/Gct																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967876	93967876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	70	578	0	ENST00000369303.4:c.2051G>A	p.Ser684Asn	p.S684N	ENST00000369303	NM_004440.3	684	aGc/aAc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332824	152332824	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	74	517	0	ENST00000206249.3:c.1130A>T	p.His377Leu	p.H377L	ENST00000206249	NM_000125.3	377	cAc/cTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521276	8521276	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	129	298	0	ENST00000356435.5:c.961+1G>T		p.X321_splice	ENST00000356435		321																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139399541	139399541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	157	449	0	ENST00000277541.6:c.4602G>T	p.Gln1534His	p.Q1534H	ENST00000277541	NM_017617.3	1534	caG/caT																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227970	53227970	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	200	683	0	ENST00000375401.3:c.2344G>T	p.Glu782Ter	p.E782*	ENST00000375401	NM_004187.3	782	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0030880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	690	505	4	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783832	50783832	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	280	676	2	ENST00000398568.2:c.223C>G	p.Leu75Val	p.L75V	ENST00000398568	NM_001042412.1	75	Cta/Gta																																																																															
TP53	7157	MSKCC	GRCh37	17	7579584	7579585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0030880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	259	557	0	ENST00000269305.4:c.102dupC	p.Pro36AlafsTer7	p.P36Afs*7	ENST00000269305	NM_001126112.2	34	-/C																																																																															
KIT	3815	MSKCC	GRCh37	4	55594094	55594094	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0030880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	83	389	1	ENST00000288135.5:c.1879+1G>A		p.X627_splice	ENST00000288135	NM_000222.2	627																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153247172	153247172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	73	346	2	ENST00000281708.4:c.1630G>T	p.Val544Phe	p.V544F	ENST00000281708	NM_033632.3	544	Gtc/Ttc																																																																															
APC	324	MSKCC	GRCh37	5	112175753	112175760	+	frameshift_variant	Frame_Shift_Del	DEL	TTATTACA	TTATTACA	-			P-0030880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	186	379	2	ENST00000257430.4:c.4464_4471del	p.Leu1488PhefsTer23	p.L1488Ffs*23	ENST00000257430	NM_000038.5	1488	TTATTACAt/t																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0030892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	190	386	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0030892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	122	272	0	ENST00000257430.4:c.4037C>G	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tGa																																																																															
APC	324	MSKCC	GRCh37	5	112173299	112173299	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0030892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	105	237	0	ENST00000257430.4:c.2008A>T	p.Lys670Ter	p.K670*	ENST00000257430	NM_000038.5	670	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0030892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	327	486	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48604721	48604721	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0030892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	114	430	0	ENST00000342988.3:c.1543A>T	p.Arg515Ter	p.R515*	ENST00000342988	NM_005359.5	515	Aga/Tga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675644	86675644	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	90	269	0	ENST00000274376.6:c.2580C>A	p.Phe860Leu	p.F860L	ENST00000274376	NM_002890.2	860	ttC/ttA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	136	439	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	163	581	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549458	187549458	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	60	456	0	ENST00000441802.2:c.4660G>C	p.Asp1554His	p.D1554H	ENST00000441802	NM_005245.3	1554	Gac/Cac																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937711	36937711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	152	503	1	ENST00000361632.4:c.1027C>T	p.Arg343Trp	p.R343W	ENST00000361632		343	Cgg/Tgg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716164	243716164	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	62	533	0	ENST00000263826.5:c.1030T>A	p.Leu344Ile	p.L344I	ENST00000263826	NM_005465.4	344	Tta/Ata																																																																															
AKT3	10000	MSKCC	GRCh37	1	243727075	243727075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	54	459	0	ENST00000263826.5:c.895G>T	p.Asp299Tyr	p.D299Y	ENST00000263826	NM_005465.4	299	Gat/Tat																																																																															
ATM	472	MSKCC	GRCh37	11	108218051	108218051	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	53	413	0	ENST00000278616.4:c.8630T>G	p.Leu2877Trp	p.L2877W	ENST00000278616	NM_000051.3	2877	tTg/tGg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641505	18641505	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	154	439	0	ENST00000266497.5:c.2504T>C	p.Ile835Thr	p.I835T	ENST00000266497		835	aTc/aCc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245954	46245958	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	106	453	0	ENST00000334344.6:c.4048_4052del	p.Lys1350Ter	p.K1350*	ENST00000334344	NM_152641.2	1350	AAAAGt/t																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112250	115112250	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	10	93	0	ENST00000257566.3:c.1490C>A	p.Pro497His	p.P497H	ENST00000257566	NM_016569.3	497	cCc/cAc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549233	21549233	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1119	113	692	0	ENST00000382592.4:c.3043A>T	p.Ser1015Cys	p.S1015C	ENST00000382592	NM_014572.2	1015	Agc/Tgc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727454	88727454	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	122	463	0	ENST00000360948.2:c.323+2T>G		p.X108_splice	ENST00000360948	NM_001012338.2	108																																																																																
POLD1	5424	MSKCC	GRCh37	19	50917054	50917054	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	168	603	0	ENST00000440232.2:c.2306C>G	p.Ala769Gly	p.A769G	ENST00000440232	NM_002691.3	769	gCt/gGt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880993	134880993	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	143	464	1	ENST00000398015.3:c.1556G>T	p.Gly519Val	p.G519V	ENST00000398015	NM_004441.4	519	gGc/gTc																																																																															
LYN	4067	MSKCC	GRCh37	8	56910947	56910947	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	187	560	0	ENST00000519728.1:c.1093C>G	p.His365Asp	p.H365D	ENST00000519728	NM_002350.3	365	Cac/Gac																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101910019	101910019	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	93	343	0	ENST00000374994.4:c.1339G>T	p.Glu447Ter	p.E447*	ENST00000374994	NM_004612.2	447	Gaa/Taa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	102	492	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714619	52714619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	88	527	1	ENST00000322088.6:c.377C>T	p.Ala126Val	p.A126V	ENST00000322088	NM_014225.5	126	gCg/gTg																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111907690	111907691	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	103	412	0	ENST00000393256.3:c.464_465insC	p.Gly156TrpfsTer5	p.G156Wfs*5	ENST00000393256	NM_006538.4	155	att/atCt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650823	37650823	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019819-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			878	116	595	0	ENST00000447079.4:c.2297del	p.Gly766AlafsTer16	p.G766Afs*16	ENST00000447079	NM_015083.1	765	gaG/ga																																																																															
AKT2	208	MSKCC	GRCh37	19	40748470	40748470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019819-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			660	104	568	1	ENST00000392038.2:c.412G>T	p.Val138Leu	p.V138L	ENST00000392038	NM_001626.4	138	Gtg/Ttg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39713141	39713141	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0019819-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			496	77	338	1	ENST00000361337.2:c.547A>T	p.Lys183Ter	p.K183*	ENST00000361337	NM_003286.2	183	Aaa/Taa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227685	53227685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019819-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	80	255	0	ENST00000375401.3:c.2503G>A	p.Gly835Ser	p.G835S	ENST00000375401	NM_004187.3	835	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	59	248	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0028793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	66	536	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851754	134851754	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56396912		P-0028793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	98	442	3	ENST00000398015.3:c.1160C>T	p.Thr387Met	p.T387M	ENST00000398015	NM_004441.4	387	aCg/aTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70356452	70356454	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0028793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	82	367	0	ENST00000374080.3:c.5353_5355del	p.Lys1785del	p.K1785del	ENST00000374080		1783	AAG/-																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822609	72822609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	130	521	1	ENST00000268489.5:c.9566C>T	p.Ala3189Val	p.A3189V	ENST00000268489	NM_006885.3	3189	gCg/gTg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43738583	43738583	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0028793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	94	414	0	ENST00000382044.4:c.3040+2T>C		p.X1014_splice	ENST00000382044	NM_001141980.1	1014																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37879598	37879598	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	412	723	0	ENST00000269571.5:c.1973T>G	p.Val658Gly	p.V658G	ENST00000269571		658	gTg/gGg																																																																															
BRAF	673	MSKCC	GRCh37	7	140494218	140494218	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	179	856	0	ENST00000288602.6:c.1030C>T	p.Gln344Ter	p.Q344*	ENST00000288602	NM_004333.4	344	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0030801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	78	583	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139816	55139816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	58	522	1	ENST00000257290.5:c.1477G>A	p.Val493Met	p.V493M	ENST00000257290	NM_006206.4	493	Gtg/Atg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123310920	123310920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	104	450	1	ENST00000358487.5:c.508C>T	p.Pro170Ser	p.P170S	ENST00000358487	NM_000141.4	170	Cct/Tct																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256576	16256576	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	21	552	0	ENST00000375759.3:c.3841del	p.Leu1281TyrfsTer4	p.L1281Yfs*4	ENST00000375759	NM_015001.2	1281	Cta/ta																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640008	3640008	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202032197		P-0030809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	24	801	1	ENST00000294008.3:c.3631G>A	p.Glu1211Lys	p.E1211K	ENST00000294008	NM_032444.2	1211	Gaa/Aaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878094	151878094	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	40	413	0	ENST00000262189.6:c.6851C>A	p.Ser2284Ter	p.S2284*	ENST00000262189	NM_170606.2	2284	tCa/tAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0030811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	154	426	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0030811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	129	622	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
AR	367	MSKCC	GRCh37	X	66766450	66766450	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	52	168	0	ENST00000374690.3:c.1462C>G	p.Gln488Glu	p.Q488E	ENST00000374690	NM_000044.3	488	Cag/Gag																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149509448	149509449	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	110	623	0	ENST00000261799.4:c.1450dup	p.Glu484GlyfsTer7	p.E484Gfs*7	ENST00000261799	NM_002609.3	484	gag/gGag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066583	94066583	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	60	430	0	ENST00000369303.4:c.1176G>T	p.Gln392His	p.Q392H	ENST00000369303	NM_004440.3	392	caG/caT																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864341	162864341	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0030811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	31	335	0	ENST00000366898.1:c.171+1G>T		p.X57_splice	ENST00000366898	NM_004562.2	57																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139393382	139393384	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0030811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	108	640	0	ENST00000277541.6:c.6147_6149del	p.Lys2049del	p.K2049del	ENST00000277541	NM_017617.3	2049	aaGAAc/aac																																																																															
MEN1	4221	MSKCC	GRCh37	11	64574493	64574493	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	302	626	0	ENST00000337652.1:c.917T>G	p.Leu306Arg	p.L306R	ENST00000337652	NM_130803.2	306	cTc/cGc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31389155	31389155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	316	496	0	ENST00000328111.2:c.2068C>T	p.Arg690Trp	p.R690W	ENST00000328111	NM_006892.3	690	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0030823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	309	480	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0030823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	16	712	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
MTOR	2475	MSKCC	GRCh37	1	11184558	11184558	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	39	492	0	ENST00000361445.4:c.6659T>G	p.Leu2220Arg	p.L2220R	ENST00000361445	NM_004958.3	2220	cTc/cGc																																																																															
NF1	4763	MSKCC	GRCh37	17	29528484	29528484	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	143	531	1	ENST00000358273.4:c.1241T>A	p.Leu414His	p.L414H	ENST00000358273	NM_001042492.2	414	cTc/cAc																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505038	186505038	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	84	273	0	ENST00000323963.5:c.894C>A	p.Phe298Leu	p.F298L	ENST00000323963		298	ttC/ttA																																																																															
ATRX	546	MSKCC	GRCh37	X	76938673	76938676	+	frameshift_variant	Frame_Shift_Del	DEL	GATA	GATA	-			P-0030823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	158	571	0	ENST00000373344.5:c.2072_2075del	p.Leu691GlnfsTer4	p.L691Qfs*4	ENST00000373344	NM_000489.3	691	cTATCa/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0030824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	55	425	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578528	7578528	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	73	810	0	ENST00000269305.4:c.402T>G	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	ttT/ttG																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686407	30686424	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTAAGCAAGCCTTTTAA	GGTAAGCAAGCCTTTTAA	-			P-0030824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	24	290	0	ENST00000359013.4:c.338+1_338+18del		p.X113_splice	ENST00000359013	NM_001024847.2	113																																																																																
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0030828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	196	619	3	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0030828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	130	515	1	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447305	49447305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	139	599	0	ENST00000301067.7:c.793C>T	p.Arg265Cys	p.R265C	ENST00000301067	NM_003482.3	265	Cgt/Tgt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711339	114711343	+	frameshift_variant	Frame_Shift_Del	DEL	CGGAT	CGGAT	-			P-0030828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	119	333	0	ENST00000543371.1:c.356_360del	p.Gly119AlafsTer24	p.G119Afs*24	ENST00000543371	NM_001198531.1	118	aaCGGATcg/aacg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715988	52715988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	84	517	0	ENST00000322088.6:c.553G>T	p.Ala185Ser	p.A185S	ENST00000322088	NM_014225.5	185	Gca/Tca																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427690	72427690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	39	279	0	ENST00000477973.2:c.798G>A	p.Arg267His	p.R267H	ENST00000477973	NM_012234.5	267	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173249	112173249	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0030828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	10	151	0	ENST00000257430.4:c.1959-1G>A		p.X653_splice	ENST00000257430	NM_000038.5	653																																																																																
RBM10	8241	MSKCC	GRCh37	X	47006836	47006836	+	5_prime_UTR_variant	5'UTR	SNP	C	C	T			P-0030828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	144	706	1	ENST00000329236.7:c.-45C>T		p.*15*	ENST00000329236	NM_001204466.1	15																																																																																
RBM10	8241	MSKCC	GRCh37	X	47041169	47041169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	158	774	1	ENST00000329236.7:c.1363G>A	p.Ala455Thr	p.A455T	ENST00000329236	NM_001204466.1	455	Gct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0030841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	113	547	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913385		P-0030841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	154	476	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579400	7579401	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	182	756	2	ENST00000269305.4:c.286dup	p.Ser96PhefsTer53	p.S96Ffs*53	ENST00000269305	NM_001126112.2	96	tct/tTct																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584784	48584785	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	96	525	0	ENST00000342988.3:c.864dup	p.Gln289SerfsTer19	p.Q289Sfs*19	ENST00000342988	NM_005359.5	288	ctt/cTtt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591919	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0030841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	35	426	0	ENST00000342988.3:c.1082_1083del	p.Arg361LeufsTer16	p.R361Lfs*16	ENST00000342988	NM_005359.5	361	CGc/c																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0030842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	33	221	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577095	7577095	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	670	711	0	ENST00000269305.4:c.843C>G	p.Asp281Glu	p.D281E	ENST00000269305	NM_001126112.2	281	gaC/gaG																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061238	38061239	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGAGTCCGGGTGCAGCGTCCAGTA			P-0030842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	279	699	0	ENST00000250448.2:c.727_750dup	p.Tyr243_Ser250dup	p.Y243_S250dup	ENST00000250448	NM_004496.3	243	-/TACTGGACGCTGCACCCGGACTCC																																																																															
APC	324	MSKCC	GRCh37	5	112177045	112177045	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	229	584	0	ENST00000257430.4:c.5756del	p.Asn1919IlefsTer51	p.N1919Ifs*51	ENST00000257430	NM_000038.5	1918	atA/at																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845678	151845678	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	153	453	0	ENST00000262189.6:c.13334del	p.Gly4445ValfsTer3	p.G4445Vfs*3	ENST00000262189	NM_170606.2	4445	gGt/gt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0030851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	121	395	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0030865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	143	573	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0030865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	84	443	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843613	156843613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	54	619	2	ENST00000524377.1:c.1039C>T	p.Arg347Cys	p.R347C	ENST00000524377	NM_002529.3	347	Cgc/Tgc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	27	360	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
TET2	54790	MSKCC	GRCh37	4	106193940	106193940	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0030865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	79	327	0	ENST00000380013.4:c.4402A>T	p.Lys1468Ter	p.K1468*	ENST00000380013	NM_001127208.2	1468	Aaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0030869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	84	315	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574032	7574032	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0030869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	43	318	0	ENST00000269305.4:c.995T>A	p.Ile332Asn	p.I332N	ENST00000269305	NM_001126112.2	332	aTc/aAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16245460	16245460	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	55	314	0	ENST00000375759.3:c.1435G>T	p.Ala479Ser	p.A479S	ENST00000375759	NM_015001.2	479	Gcg/Tcg																																																																															
B2M	567	MSKCC	GRCh37	15	45007798	45007798	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	58	282	0	ENST00000558401.1:c.245T>C	p.Phe82Ser	p.F82S	ENST00000558401	NM_004048.2	82	tTc/tCc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476247	88476247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	49	371	0	ENST00000360948.2:c.1885C>T	p.Leu629Phe	p.L629F	ENST00000360948	NM_001012338.2	629	Ctc/Ttc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028883	47028883	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	44	339	0	ENST00000329236.7:c.187G>T	p.Glu63Ter	p.E63*	ENST00000329236	NM_001204466.1	63	Gag/Tag																																																																															
MED12	9968	MSKCC	GRCh37	X	70346284	70346284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	49	438	0	ENST00000374080.3:c.2635C>T	p.Leu879Phe	p.L879F	ENST00000374080		879	Ctc/Ttc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	79	379	0	ENST00000397062.3:c.101G>A	p.Arg34Gln	p.R34Q	ENST00000397062	NM_006164.4	34	cGa/cAa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	91	482	0	ENST00000244661.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000244661	NM_003537.3	74	Gaa/Caa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096912	11096912	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs150949949		P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	144	810	0	ENST00000344626.4:c.403C>G	p.Pro135Ala	p.P135A	ENST00000344626	NM_003072.3	135	Cca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	135	659	2	ENST00000269305.4:c.920-1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49436102	49436102	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	62	402	2	ENST00000301067.7:c.5879del	p.Gly1960AlafsTer87	p.G1960Afs*87	ENST00000301067	NM_003482.3	1960	gGc/gc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11291480	11291480	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	101	528	0	ENST00000361445.4:c.2526G>T	p.Trp842Cys	p.W842C	ENST00000361445	NM_004958.3	842	tgG/tgT																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100608	8100608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	65	719	0	ENST00000346208.3:c.582G>A	p.Met194Ile	p.M194I	ENST00000346208		194	atG/atA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435060	49435060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	135	640	0	ENST00000301067.7:c.6493C>T	p.Pro2165Ser	p.P2165S	ENST00000301067	NM_003482.3	2165	Ccc/Tcc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749238	43749238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	135	742	0	ENST00000382044.4:c.1568C>T	p.Ser523Phe	p.S523F	ENST00000382044	NM_001141980.1	523	tCt/tTt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010427	48010427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	83	450	1	ENST00000234420.5:c.55G>A	p.Asp19Asn	p.D19N	ENST00000234420	NM_000179.2	19	Gat/Aat																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1956926	1956926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	152	725	0	ENST00000382891.5:c.2377C>T	p.His793Tyr	p.H793Y	ENST00000382891	NM_133335.3	793	Cac/Tac																																																																															
ROS1	6098	MSKCC	GRCh37	6	117629979	117629979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	83	452	0	ENST00000368508.3:c.6547C>T	p.Pro2183Ser	p.P2183S	ENST00000368508	NM_002944.2	2183	Cca/Tca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55224324	55224324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	95	583	0	ENST00000275493.2:c.1105C>T	p.Leu369Phe	p.L369F	ENST00000275493	NM_005228.3	369	Ctc/Ttc																																																																															
MED12	9968	MSKCC	GRCh37	X	70345222	70345222	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	83	644	0	ENST00000374080.3:c.2248T>C	p.Cys750Arg	p.C750R	ENST00000374080		750	Tgc/Cgc																																																																															
WT1	7490	MSKCC	GRCh37	11	32417869	32417871	+	missense_variant	Missense_Mutation	ONP	AAG	AAG	TAA			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	85	590	0	ENST00000332351.3:c.1181_1183delinsTTA	p.Ala394_Tyr395delinsValAsn	p.A394_Y395delinsVN	ENST00000332351	NM_024426.4	394	gCTTac/gTTAac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	200	555	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134881022	134881022	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	108	348	0	ENST00000398015.3:c.1585G>A	p.Asp529Asn	p.D529N	ENST00000398015	NM_004441.4	529	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112175389	112175389	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	68	303	0	ENST00000257430.4:c.4098del	p.Gln1367ArgfsTer48	p.Q1367Rfs*48	ENST00000257430	NM_000038.5	1366	gcT/gc																																																																															
APC	324	MSKCC	GRCh37	5	112175493	112175493	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	89	361	0	ENST00000257430.4:c.4203del	p.Ile1401MetfsTer14	p.I1401Mfs*14	ENST00000257430	NM_000038.5	1401	aTt/at																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553000	106553000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	218	602	0	ENST00000369096.4:c.965C>T	p.Thr322Met	p.T322M	ENST00000369096	NM_001198.3	322	aCg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151835903	151835903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	66	449	0	ENST00000262189.6:c.14621G>A	p.Arg4874Gln	p.R4874Q	ENST00000262189	NM_170606.2	4874	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	180	308	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112170652	112170652	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0030745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	111	230	0	ENST00000257430.4:c.1748C>G	p.Ser583Ter	p.S583*	ENST00000257430	NM_000038.5	583	tCa/tGa																																																																															
KIT	3815	MSKCC	GRCh37	4	55604715	55604715	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373152714		P-0030745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	73	237	0	ENST00000288135.5:c.2923G>A	p.Asp975Asn	p.D975N	ENST00000288135	NM_000222.2	975	Gat/Aat																																																																															
PREX2	80243	MSKCC	GRCh37	8	68989671	68989671	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147538692		P-0030745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	101	407	0	ENST00000288368.4:c.1609G>A	p.Val537Ile	p.V537I	ENST00000288368	NM_024870.2	537	Gtt/Att																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710518	114710518	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0030745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	119	252	0	ENST00000543371.1:c.3G>T	p.Met1?	p.M1?	ENST00000543371	NM_001198531.1	1	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0030745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	233	352	0	ENST00000269305.4:c.375+1G>C		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	362	505	1	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692902	89692902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	203	355	0	ENST00000371953.3:c.386G>A	p.Gly129Glu	p.G129E	ENST00000371953	NM_000314.4	129	gGa/gAa																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271491	26271491	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	143	276	0	ENST00000305910.3:c.122G>C	p.Arg41Pro	p.R41P	ENST00000305910	NM_003534.2	41	cGc/cCc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123263421	123263421	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	206	296	0	ENST00000358487.5:c.1322A>G	p.Asn441Ser	p.N441S	ENST00000358487	NM_000141.4	441	aAc/aGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416557	49416557	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	195	356	0	ENST00000301067.7:c.16154C>G	p.Ser5385Ter	p.S5385*	ENST00000301067	NM_003482.3	5385	tCa/tGa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425755	49425755	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	282	487	0	ENST00000301067.7:c.12733G>T	p.Glu4245Ter	p.E4245*	ENST00000301067	NM_003482.3	4245	Gag/Tag																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562258	21562258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	373	598	0	ENST00000382592.4:c.1661G>T	p.Gly554Val	p.G554V	ENST00000382592	NM_014572.2	554	gGc/gTc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88690612	88690612	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	202	321	0	ENST00000360948.2:c.418A>T	p.Thr140Ser	p.T140S	ENST00000360948	NM_001012338.2	140	Acc/Tcc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158626964	158626964	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	201	339	0	ENST00000263640.3:c.706A>G	p.Ile236Val	p.I236V	ENST00000263640	NM_001105.4	236	Atc/Gtc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728598	190728599	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	234	432	1	ENST00000441310.2:c.1986_1987delinsTT	p.Leu662_Ala663delinsPheSer	p.L662_A663delinsFS	ENST00000441310	NM_000534.4	662	ttGGcc/ttTTcc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436345	52436345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	294	411	0	ENST00000460680.1:c.2149C>T	p.Arg717Trp	p.R717W	ENST00000460680	NM_004656.3	717	Cgg/Tgg																																																																															
KIT	3815	MSKCC	GRCh37	4	55561896	55561896	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	128	199	0	ENST00000288135.5:c.286A>G	p.Thr96Ala	p.T96A	ENST00000288135	NM_000222.2	96	Acg/Gcg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539912	187539912	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	209	255	0	ENST00000441802.2:c.7828G>T	p.Ala2610Ser	p.A2610S	ENST00000441802	NM_005245.3	2610	Gct/Tct																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662752	117662752	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	140	246	0	ENST00000368508.3:c.4713C>G	p.Asp1571Glu	p.D1571E	ENST00000368508	NM_002944.2	1571	gaC/gaG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	98	333	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	153	443	0	ENST00000269305.4:c.764T>A	p.Ile255Asn	p.I255N	ENST00000269305	NM_001126112.2	255	aTc/aAc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31374365	31374365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	52	420	0	ENST00000328111.2:c.364C>T	p.Arg122Cys	p.R122C	ENST00000328111	NM_006892.3	122	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0030753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	407	495	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	65	185	0	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109888	115109888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	251	467	2	ENST00000257566.3:c.1990G>T	p.Ala664Ser	p.A664S	ENST00000257566	NM_016569.3	664	Gcg/Tcg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117789	70117789	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	241	476	0	ENST00000245479.2:c.257G>A	p.Trp86Ter	p.W86*	ENST00000245479	NM_000346.3	86	tGg/tAg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185183595	185183595	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0030753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	141	313	0	ENST00000265026.3:c.1449C>G	p.Tyr483Ter	p.Y483*	ENST00000265026	NM_004721.4	483	taC/taG																																																																															
FLT3	2322	MSKCC	GRCh37	13	28622425	28622425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	142	298	1	ENST00000241453.7:c.1192G>A	p.Asp398Asn	p.D398N	ENST00000241453	NM_004119.2	398	Gat/Aat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178643	56178643	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	156	190	0	ENST00000399503.3:c.3617del	p.Pro1206LeufsTer39	p.P1206Lfs*39	ENST00000399503	NM_005921.1	1206	Cct/ct																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061463	38061463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	170	341	0	ENST00000250448.2:c.526A>T	p.Ile176Phe	p.I176F	ENST00000250448	NM_004496.3	176	Atc/Ttc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570177	95570177	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	144	262	0	ENST00000343455.3:c.3556A>G	p.Asn1186Asp	p.N1186D	ENST00000343455	NM_177438.2	1186	Aat/Gat																																																																															
CDH1	999	MSKCC	GRCh37	16	68835736	68835736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	252	408	0	ENST00000261769.5:c.327del	p.Lys109AsnfsTer8	p.K109Nfs*8	ENST00000261769	NM_004360.3	109	aaG/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	220	458	0	ENST00000269305.4:c.535C>G	p.His179Asp	p.H179D	ENST00000269305	NM_001126112.2	179	Cat/Gat																																																																															
TSC2	7249	MSKCC	GRCh37	16	2137898	2137898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	291	530	1	ENST00000219476.3:c.5024C>T	p.Pro1675Leu	p.P1675L	ENST00000219476	NM_000548.3	1675	cCg/cTg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64574642	64574653	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTACTGACCTT	TCTACTGACCTT	-			P-0030778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	227	438	0	ENST00000337652.1:c.837_839+9del		p.X279_splice	ENST00000337652	NM_130803.2	279																																																																																
ARID2	196528	MSKCC	GRCh37	12	46244586	46244586	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	207	374	0	ENST00000334344.6:c.2680C>G	p.Gln894Glu	p.Q894E	ENST00000334344	NM_152641.2	894	Cag/Gag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820810	3820810	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	338	722	0	ENST00000262367.5:c.2641C>T	p.Gln881Ter	p.Q881*	ENST00000262367	NM_004380.2	881	Cag/Tag																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980596	1980596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	225	446	0	ENST00000382891.5:c.4058G>A	p.Arg1353Gln	p.R1353Q	ENST00000382891	NM_133335.3	1353	cGg/cAg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750823	57750823	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	159	328	0	ENST00000274289.3:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000274289	NM_006622.3	594	gAt/gGt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288796	33288805	+	frameshift_variant	Frame_Shift_Del	DEL	GACACGGCCG	GACACGGCCG	-			P-0030778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	134	312	0	ENST00000374542.5:c.747_756del	p.Gly250Ter	p.G250*	ENST00000374542	NM_001141970.1	249	acCGGCCGTGTC/ac																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781296	9781296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002901-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	80	456	0	ENST00000377346.4:c.1801C>T	p.Arg601Trp	p.R601W	ENST00000377346	NM_005026.3	601	Cgg/Tgg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608116	28608116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002901-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	75	591	1	ENST00000241453.7:c.1850G>T	p.Gly617Val	p.G617V	ENST00000241453	NM_004119.2	617	gGa/gTa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11182148	11182148	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	139	549	0	ENST00000361445.4:c.6698A>T	p.Asn2233Ile	p.N2233I	ENST00000361445	NM_004958.3	2233	aAc/aTc																																																																															
RET	5979	MSKCC	GRCh37	10	43610129	43610129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141185224		P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	67	623	0	ENST00000355710.3:c.2081G>A	p.Arg694Gln	p.R694Q	ENST00000355710	NM_020975.4	694	cGg/cAg																																																																															
SDHD	6392	MSKCC	GRCh37	11	111959708	111959708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	107	432	0	ENST00000375549.3:c.287C>T	p.Ala96Val	p.A96V	ENST00000375549	NM_003002.3	96	gCt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	167	452	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434465	49434467	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	100	789	0	ENST00000301067.7:c.7086_7088del	p.Pro2363del	p.P2363del	ENST00000301067	NM_003482.3	2362	ccTCCa/cca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747342068		P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	148	704	0	ENST00000269305.4:c.394A>G	p.Lys132Glu	p.K132E	ENST00000269305	NM_001126112.2	132	Aag/Gag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600005	10600005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	145	605	0	ENST00000171111.5:c.1571G>T	p.Gly524Val	p.G524V	ENST00000171111	NM_203500.1	524	gGc/gTc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11024624	11024625	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	87	534	0	ENST00000327064.4:c.743_744del	p.Pro248ArgfsTer43	p.P248Rfs*43	ENST00000327064	NM_199141.1	247	ctCCcc/ctcc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130579	29130579	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	65	536	0	ENST00000328354.6:c.131G>T	p.Ser44Ile	p.S44I	ENST00000328354	NM_007194.3	44	aGc/aTc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670844	134670844	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	49	423	0	ENST00000398015.3:c.755G>C	p.Arg252Pro	p.R252P	ENST00000398015	NM_004441.4	252	cGa/cCa																																																																															
TET2	54790	MSKCC	GRCh37	4	106155631	106155631	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	79	468	0	ENST00000380013.4:c.532G>T	p.Glu178Ter	p.E178*	ENST00000380013	NM_001127208.2	178	Gag/Tag																																																																															
TERT	7015	MSKCC	GRCh37	5	1258758	1258758	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	124	581	1	ENST00000310581.5:c.2987C>A	p.Thr996Lys	p.T996K	ENST00000310581	NM_198253.2	996	aCg/aAg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79966126	79966126	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	69	419	1	ENST00000265081.6:c.790G>T	p.Glu264Ter	p.E264*	ENST00000265081	NM_002439.4	264	Gag/Tag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099054	157099226	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	CGAACTCAACATGGCCCATAACGCGGGCGCCGCGGCCGCCGCCGGCACCCACAGCGCCAAGAGCGGCGGCTCCGAGGCGGCTCTCAAGGAGGGTGGAAGCGCCGCCGCGCTGTCCTCCTCCTCCTCCTCCTCCGCGGCGGCAGCGGCGGCATCCTCTTCCTCCTCGTCGGGCC	CGAACTCAACATGGCCCATAACGCGGGCGCCGCGGCCGCCGCCGGCACCCACAGCGCCAAGAGCGGCGGCTCCGAGGCGGCTCTCAAGGAGGGTGGAAGCGCCGCCGCGCTGTCCTCCTCCTCCTCCTCCTCCGCGGCGGCAGCGGCGGCATCCTCTTCCTCCTCGTCGGGCC	-			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	151	18	0				ENST00000346085	NM_020732.3			20-Jan																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376695	8376695	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	63	483	0	ENST00000356435.5:c.4418G>C	p.Gly1473Ala	p.G1473A	ENST00000356435		1473	gGc/gCc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521468	8521468	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	55	626	0	ENST00000356435.5:c.770G>C	p.Cys257Ser	p.C257S	ENST00000356435		257	tGt/tCt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900226	101900226	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	53	451	0	ENST00000374994.4:c.660G>T	p.Trp220Cys	p.W220C	ENST00000374994	NM_004612.2	220	tgG/tgT																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139815530	139815530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	77	652	0	ENST00000247668.2:c.1001C>T	p.Ala334Val	p.A334V	ENST00000247668	NM_021138.3	334	gCg/gTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921616	39921616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	48	511	0	ENST00000378444.4:c.4204G>A	p.Glu1402Lys	p.E1402K	ENST00000378444	NM_001123385.1	1402	Gag/Aag																																																																															
STAG2	10735	MSKCC	GRCh37	X	123210244	123210244	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	45	517	0	ENST00000218089.9:c.2596G>T	p.Ala866Ser	p.A866S	ENST00000218089	NM_001042749.1	866	Gca/Tca																																																																															
STAG2	10735	MSKCC	GRCh37	X	123220572	123220572	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	53	533	0	ENST00000218089.9:c.3229C>A	p.Pro1077Thr	p.P1077T	ENST00000218089	NM_001042749.1	1077	Cca/Aca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0030723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	113	441	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589219	67589219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	36	408	0	ENST00000274335.5:c.1207G>A	p.Glu403Lys	p.E403K	ENST00000274335		403	Gaa/Aaa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589102	67589182	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATACCTTTATTTTTATATTGTTTTTACAGGAAAGGGGGAAATAACAAATTAATCAAAATATTTCATCGAGATGGGAAATAT	ATACCTTTATTTTTATATTGTTTTTACAGGAAAGGGGGAAATAACAAATTAATCAAAATATTTCATCGAGATGGGAAATAT	-			P-0030723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	28	254	0	ENST00000274335.5:c.1119-29_1170del		p.X373_splice	ENST00000274335		373																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151841908	151841908	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	69	345	0	ENST00000262189.6:c.14233G>C	p.Glu4745Gln	p.E4745Q	ENST00000262189	NM_170606.2	4745	Gaa/Caa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0030728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	47	321	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0030728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	175	580	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273278	55273278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	90	605	0	ENST00000275493.2:c.3601G>A	p.Ala1201Thr	p.A1201T	ENST00000275493	NM_005228.3	1201	Gcg/Acg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261243	16261243	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	97	598	0	ENST00000375759.3:c.8508G>C	p.Gln2836His	p.Q2836H	ENST00000375759	NM_015001.2	2836	caG/caC																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15965122	15965122	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	64	454	0	ENST00000268712.3:c.5474T>C	p.Val1825Ala	p.V1825A	ENST00000268712	NM_006311.3	1825	gTg/gCg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19261517	19261518	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0030728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	117	636	0	ENST00000162023.5:c.27_28del	p.Arg10HisfsTer24	p.R10Hfs*24	ENST00000162023		9	tcCCgc/tcgc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460396	149460396	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	93	607	0	ENST00000286301.3:c.241A>T	p.Thr81Ser	p.T81S	ENST00000286301	NM_005211.3	81	Acc/Tcc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044916	47044916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	104	806	0	ENST00000329236.7:c.2008G>A	p.Glu670Lys	p.E670K	ENST00000329236	NM_001204466.1	670	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720805	89720808	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0030730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	41	288	0	ENST00000371953.3:c.956_959delCTTT	p.Thr319LysfsTer24	p.T319Kfs*24	ENST00000371953	NM_000314.4	319	aCTTTa/aa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	61	673	0	ENST00000347630.2:c.393G>C	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgC																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112593	115112593	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	78	757	0	ENST00000257566.3:c.1147G>T	p.Glu383Ter	p.E383*	ENST00000257566	NM_016569.3	383	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0030732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	536	406	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658955	3658955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	635	476	0	ENST00000294008.3:c.11G>A	p.Ser4Asn	p.S4N	ENST00000294008	NM_032444.2	4	aGt/aAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	307	523	0	ENST00000269305.4:c.794T>A	p.Leu265Gln	p.L265Q	ENST00000269305	NM_001126112.2	265	cTg/cAg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1919962	1919962	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	163	643	0	ENST00000382891.5:c.1022A>G	p.Lys341Arg	p.K341R	ENST00000382891	NM_133335.3	341	aAa/aGa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38959938	38959938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	14	379	0	ENST00000357387.3:c.1994C>A	p.Thr665Lys	p.T665K	ENST00000357387	NM_152756.3	665	aCa/aAa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0030736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	71	428	1	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0030736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	221	656	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
MED12	9968	MSKCC	GRCh37	X	70356171	70356171	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	144	410	0	ENST00000374080.3:c.5066A>G	p.Asp1689Gly	p.D1689G	ENST00000374080		1689	gAt/gGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	167	381	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0030768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	270	637	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0030768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	25	396	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175648	112175648	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	110	332	0	ENST00000257430.4:c.4358delC	p.Pro1453LeufsTer20	p.P1453Lfs*20	ENST00000257430	NM_000038.5	1453	Cct/ct																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67198843	67198843	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	42	331	0	ENST00000312629.5:c.314A>C	p.Lys105Thr	p.K105T	ENST00000312629	NM_003952.2	105	aAa/aCa																																																																															
ATRX	546	MSKCC	GRCh37	X	76939330	76939330	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	171	310	0	ENST00000373344.5:c.1418A>C	p.His473Pro	p.H473P	ENST00000373344	NM_000489.3	473	cAc/cCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0030775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	118	334	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0030775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	451	548	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	98	258	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0030775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	169	281	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087513	27087513	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	199	603	0	ENST00000324856.7:c.2090del	p.Pro697ArgfsTer45	p.P697Rfs*45	ENST00000324856	NM_006015.4	696	tCc/tc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089581	27089581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	65	591	0	ENST00000324856.7:c.2537G>A	p.Gly846Asp	p.G846D	ENST00000324856	NM_006015.4	846	gGc/gAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092747	27092747	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	93	417	0	ENST00000324856.7:c.2768T>C	p.Met923Thr	p.M923T	ENST00000324856	NM_006015.4	923	aTg/aCg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097737	27097737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	71	567	1	ENST00000324856.7:c.3326G>A	p.Arg1109Gln	p.R1109Q	ENST00000324856	NM_006015.4	1109	cGg/cAg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598375	28598375	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148862241		P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	67	522	0	ENST00000253063.3:c.347C>T	p.Ala116Val	p.A116V	ENST00000253063	NM_031459.4	116	gCc/gTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653796	89653798	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	36	366	0	ENST00000371953.3:c.97_99delATT	p.Ile33del	p.I33del	ENST00000371953	NM_000314.4	32	ATT/-																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	23	295	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	59	248	1	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	99	442	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
MEN1	4221	MSKCC	GRCh37	11	64571820	64571820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	203	745	0	ENST00000337652.1:c.1834C>T	p.Arg612Cys	p.R612C	ENST00000337652	NM_130803.2	612	Cgc/Tgc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948205	71948205	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	113	775	0	ENST00000298229.2:c.2917G>T	p.Ala973Ser	p.A973S	ENST00000298229	NM_001567.3	973	Gcg/Tcg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342633	118342634	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	21	325	0	ENST00000534358.1:c.766dup	p.Ile256AsnfsTer2	p.I256Nfs*2	ENST00000534358	NM_005933.3	253	-/A																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	61	572	1	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416952	416953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	51	371	4	ENST00000399788.2:c.3597dupA	p.Gly1200ArgfsTer7	p.G1200Rfs*7	ENST00000399788	NM_001042603.1	1199	-/A																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856439	111856439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	110	182	0	ENST00000341259.2:c.490G>A	p.Gly164Arg	p.G164R	ENST00000341259	NM_005475.2	164	Ggg/Agg																																																																															
SETD8	387893	MSKCC	GRCh37	12	123880971	123880971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	38	290	1	ENST00000330479.4:c.589G>A	p.Glu197Lys	p.E197K	ENST00000330479	NM_020382.3	197	Gag/Aag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	37	479	2	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281629	49281629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	164	633	0	ENST00000282018.3:c.676C>T	p.Arg226Trp	p.R226W	ENST00000282018	NM_020377.2	226	Cgg/Tgg																																																																															
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	116	489	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2127678	2127678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	94	583	1	ENST00000219476.3:c.2917G>A	p.Glu973Lys	p.E973K	ENST00000219476	NM_000548.3	973	Gag/Aag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857428	9857428	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	41	381	0	ENST00000330684.3:c.3973del	p.Tyr1325ThrfsTer72	p.Y1325Tfs*72	ENST00000330684	NM_001134407.1	1325	Tac/ac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993832	72993832	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	84	359	1	ENST00000268489.5:c.213del	p.Ser72ProfsTer37	p.S72Pfs*37	ENST00000268489	NM_006885.3	71	ccC/cc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805672	89805672	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs17227396		P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	128	538	0	ENST00000389301.3:c.4036G>A	p.Ala1346Thr	p.A1346T	ENST00000389301	NM_000135.2	1346	Gcg/Acg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	93	427	5	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
FLCN	201163	MSKCC	GRCh37	17	17127424	17127424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	179	551	1	ENST00000285071.4:c.430G>A	p.Gly144Arg	p.G144R	ENST00000285071	NM_144997.5	144	Gga/Aga																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453399	40453399	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs759027671		P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	189	736	9	ENST00000345506.4:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000345506	NM_003152.3	366	Ccc/cc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	150	510	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	82	452	3	ENST00000245479.2:c.916delG	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575096	48575096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	28	345	0	ENST00000342988.3:c.290G>A	p.Arg97His	p.R97H	ENST00000342988	NM_005359.5	97	cGt/cAt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1623966	1623966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	167	577	0	ENST00000344749.5:c.533C>T	p.Pro178Leu	p.P178L	ENST00000344749	NM_001136139.2	178	cCg/cTg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030669	48030669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	27	427	1	ENST00000234420.5:c.3283C>T	p.Arg1095Cys	p.R1095C	ENST00000234420	NM_000179.2	1095	Cgc/Tgc																																																																															
BARD1	580	MSKCC	GRCh37	2	215633966	215633966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	38	490	0	ENST00000260947.4:c.1385G>T	p.Trp462Leu	p.W462L	ENST00000260947	NM_000465.2	462	tGg/tTg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44520605	44520605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	105	338	0	ENST00000291552.4:c.157C>T	p.Arg53Cys	p.R53C	ENST00000291552	NM_006758.2	53	Cgt/Tgt																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	145	648	11	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	59	404	1	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt																																																																															
BCL6	604	MSKCC	GRCh37	3	187447061	187447061	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	105	655	0	ENST00000232014.4:c.1132T>C	p.Tyr378His	p.Y378H	ENST00000232014	NM_001130845.1	378	Tac/Cac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280142	66280142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	34	281	1	ENST00000273854.3:c.1547C>T	p.Thr516Met	p.T516M	ENST00000273854	NM_004439.5	516	aCg/aTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467629	66467629	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	64	358	0	ENST00000273854.3:c.640T>C	p.Phe214Leu	p.F214L	ENST00000273854	NM_004439.5	214	Ttt/Ctt																																																																															
TET2	54790	MSKCC	GRCh37	4	106193806	106193807	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	40	318	0	ENST00000380013.4:c.4271_4272del	p.Ser1424Ter	p.S1424*	ENST00000380013	NM_001127208.2	1423	gTC/g																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	68	313	6	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755776	57755776	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	23	469	0	ENST00000274289.3:c.11del	p.Leu4CysfsTer96	p.L4Cfs*96	ENST00000274289	NM_006622.3	4	tTg/tg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564366	86564366	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	95	337	0	ENST00000274376.6:c.98T>C	p.Val33Ala	p.V33A	ENST00000274376	NM_002890.2	33	gTg/gCg																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	60	360	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	27	231	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020848	26020848	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	57	374	0	ENST00000357647.3:c.131C>A	p.Pro44Gln	p.P44Q	ENST00000357647	NM_003529.2	44	cCg/cAg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798201	32798201	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	179	598	0	ENST00000374899.4:c.1478T>C	p.Leu493Pro	p.L493P	ENST00000374899	NM_018833.2	493	cTa/cCa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800223	32800225	+	inframe_deletion	In_Frame_Del	DEL	CCC	CCC	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	36	368	0	ENST00000374899.4:c.1157_1159del	p.Gly386del	p.G386del	ENST00000374899	NM_018833.2	386	gGGGtg/gtg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803041	32803041	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	80	618	0	ENST00000374899.4:c.835del	p.Val279TrpfsTer26	p.V279Wfs*26	ENST00000374899	NM_018833.2	279	Gtg/tg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	251	673	2	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100260	157100260	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	45	103	0	ENST00000346085.5:c.1202del	p.Gly401AlafsTer29	p.G401Afs*29	ENST00000346085	NM_020732.3	399	gcG/gc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	129	564	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026514	6026514	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	28	572	0	ENST00000265849.7:c.1882C>T	p.Arg628Ter	p.R628*	ENST00000265849	NM_000535.5	628	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240762	55240762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	168	689	0	ENST00000275493.2:c.2006G>A	p.Arg669Gln	p.R669Q	ENST00000275493	NM_005228.3	669	cGa/cAa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146944	38146945	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	141	762	1	ENST00000317025.8:c.3197dup	p.Asn1066LysfsTer14	p.N1066Kfs*14	ENST00000317025	NM_023034.1	1066	aac/aaAc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740379	145740379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	196	768	1	ENST00000428558.2:c.1561C>T	p.Arg521Trp	p.R521W	ENST00000428558	NM_004260.3	521	Cgg/Tgg																																																																															
ABL1	25	MSKCC	GRCh37	9	133760790	133760790	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	72	530	0	ENST00000318560.5:c.3113C>A	p.Ala1038Glu	p.A1038E	ENST00000318560	NM_005157.4	1038	gCg/gAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	86	475	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123215320	123215320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	95	504	1	ENST00000218089.9:c.2866G>A	p.Ala956Thr	p.A956T	ENST00000218089	NM_001042749.1	956	Gct/Act																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0030672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	52	347	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0030672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	8	412	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
APC	324	MSKCC	GRCh37	5	112173830	112173831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	17	357	0	ENST00000257430.4:c.2544dupA	p.Asp849ArgfsTer2	p.D849Rfs*2	ENST00000257430	NM_000038.5	847	gaa/gAaa																																																																															
TET1	80312	MSKCC	GRCh37	10	70333991	70333993	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0030672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	18	303	0	ENST00000373644.4:c.1902_1904del	p.Val635del	p.V635del	ENST00000373644	NM_030625.2	632	tcTGTt/tct																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508284	106508284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	25	302	0	ENST00000359195.3:c.278C>T	p.Pro93Leu	p.P93L	ENST00000359195	NM_002649.2	93	cCg/cTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604763	48604763	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	99	407	0	ENST00000342988.3:c.1586del	p.Leu529TyrfsTer8	p.L529Yfs*8	ENST00000342988	NM_005359.5	529	Tta/ta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398283	25398284	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCAGCT			P-0030672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	84	431	0	ENST00000256078.4:c.30_35dup	p.Ala11_Gly12dup	p.A11_G12dup	ENST00000256078	NM_033360.2	11	ggt/ggAGCTGGt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670721	134670721	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	45	474	1	ENST00000398015.3:c.632C>A	p.Thr211Lys	p.T211K	ENST00000398015	NM_004441.4	211	aCa/aAa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	30946636	30946636	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0030672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	44	129	1	ENST00000375687.4:c.57+1G>A		p.X19_splice	ENST00000375687	NM_015338.5	19																																																																																
RAD50	10111	MSKCC	GRCh37	5	131939081	131939081	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	33	505	0	ENST00000265335.6:c.2297A>T	p.Asn766Ile	p.N766I	ENST00000265335		766	aAc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	102	472	0	ENST00000269305.4:c.841G>T	p.Asp281Tyr	p.D281Y	ENST00000269305	NM_001126112.2	281	Gac/Tac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921551	178921551	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	18	285	0	ENST00000263967.3:c.1033A>T	p.Asn345Tyr	p.N345Y	ENST00000263967	NM_006218.2	345	Aat/Tat																																																																															
LATS2	26524	MSKCC	GRCh37	13	21620061	21620359	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	CTGAACCGAAGACTTGGATGGCTGTTTTAACCCCTCACGAATCTCTTGCAGTCGCTGCCGGCTATTTCCAGAATAAGTCGTGGCAGGAAAAGTCTTTGGCCTCATTGTTAGTCCAGTTTCCTTTTACCATAAATACAATCTTCTTAAAGTGTTTTATTATTTAAAAAAAAAAACTGTCAATAGTATCAGTTTGTTGTAAACATACTTTCAAAATAATTTCCTTTTGAAAATGTTCTTTCCTTCCATTTTTGTAGTTCCTATAGAGAACCTAAAATTTTCCAAAGTCTTCATTTTGAAGA	CTGAACCGAAGACTTGGATGGCTGTTTTAACCCCTCACGAATCTCTTGCAGTCGCTGCCGGCTATTTCCAGAATAAGTCGTGGCAGGAAAAGTCTTTGGCCTCATTGTTAGTCCAGTTTCCTTTTACCATAAATACAATCTTCTTAAAGTGTTTTATTATTTAAAAAAAAAAACTGTCAATAGTATCAGTTTGTTGTAAACATACTTTCAAAATAATTTCCTTTTGAAAATGTTCTTTCCTTCCATTTTTGTAGTTCCTATAGAGAACCTAAAATTTTCCAAAGTCTTCATTTTGAAGA	-			P-0030675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	232	442	0	ENST00000382592.4:c.-194_105del		p.*65*	ENST00000382592	NM_014572.2	65																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38060688	38060688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	95	493	0	ENST00000250448.2:c.1301C>T	p.Pro434Leu	p.P434L	ENST00000250448	NM_004496.3	434	cCc/cTc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027997	48027997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	47	241	0	ENST00000234420.5:c.2875C>T	p.Arg959Cys	p.R959C	ENST00000234420	NM_000179.2	959	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	67	504	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78433847	78433848	+	splice_donor_variant	Splice_Site	DEL	AC	AC	-			P-0030684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	28	404	0	ENST00000370768.2:c.250+1_250+2del		p.X84_splice	ENST00000370768	NM_003902.3	84																																																																																
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	66	608	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573563	48573564	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	43	391	0	ENST00000342988.3:c.153dupA	p.Asp52ArgfsTer2	p.D52Rfs*2	ENST00000342988	NM_005359.5	49	-/A																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0030685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	75	449	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0030685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	31	558	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
RARA	5914	MSKCC	GRCh37	17	38510612	38510612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	103	498	0	ENST00000254066.5:c.866G>A	p.Gly289Glu	p.G289E	ENST00000254066	NM_000964.3	289	gGg/gAg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324665	31324665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	36	238	1	ENST00000412585.2:c.143C>T	p.Ser48Leu	p.S48L	ENST00000412585	NM_005514.6	48	tCa/tTa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575108	48575153	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCTGATCTTCACAAAAATGAACTAAAACATGTTAAATATTGTCA	GGCCTGATCTTCACAAAAATGAACTAAAACATGTTAAATATTGTCA	-			P-0030685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	30	342	0	ENST00000342988.3:c.303_348del	p.Trp101CysfsTer6	p.W101Cfs*6	ENST00000342988	NM_005359.5	101	tGGCCTGATCTTCACAAAAATGAACTAAAACATGTTAAATATTGTCAg/tg																																																																															
MET	4233	MSKCC	GRCh37	7	116409842	116409842	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	33	262	0	ENST00000397752.3:c.2727A>G	p.Ile909Met	p.I909M	ENST00000397752	NM_000245.2	909	atA/atG																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0030686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	63	472	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0030686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	62	466	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
FAM46C	54855	MSKCC	GRCh37	1	118165642	118165642	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	53	410	0	ENST00000369448.3:c.152T>A	p.Ile51Asn	p.I51N	ENST00000369448	NM_017709.3	51	aTc/aAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857640	9857640	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	60	377	0	ENST00000330684.3:c.3761T>C	p.Leu1254Pro	p.L1254P	ENST00000330684	NM_001134407.1	1254	cTt/cCt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89371680	89371680	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	189	611	0	ENST00000301030.4:c.160C>T	p.Arg54Ter	p.R54*	ENST00000301030	NM_001256183.1	54	Cga/Tga																																																																															
AURKA	6790	MSKCC	GRCh37	20	54959339	54959339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	88	396	0	ENST00000312783.6:c.361G>A	p.Glu121Lys	p.E121K	ENST00000312783	NM_198436.1	121	Gaa/Aaa																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564671	139564671	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	43	696	0	ENST00000308874.7:c.460A>G	p.Asn154Asp	p.N154D	ENST00000308874		154	Aac/Gac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0030689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	85	476	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463247	25463247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	86	509	1	ENST00000264709.3:c.2246G>A	p.Arg749His	p.R749H	ENST00000264709	NM_175629.2	749	cGc/cAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044970	47044970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	89	594	0	ENST00000329236.7:c.2062C>T	p.Arg688Cys	p.R688C	ENST00000329236	NM_001204466.1	688	Cgc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220504	1220504	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0030689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	80	519	0	ENST00000326873.7:c.597G>C	p.Glu199Asp	p.E199D	ENST00000326873	NM_000455.4	199	gaG/gaC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0030696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	84	473	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115725	8115728	+	frameshift_variant	Frame_Shift_Del	DEL	GAAG	GAAG	-			P-0030696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	59	411	0	ENST00000346208.3:c.1076_1079delAAGG	p.Glu359AlafsTer44	p.E359Afs*44	ENST00000346208		357	aaGAAG/aa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061450	38061450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	58	564	0	ENST00000250448.2:c.539C>T	p.Thr180Ile	p.T180I	ENST00000250448	NM_004496.3	180	aCc/aTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100919	27100919	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	87	532	0	ENST00000324856.7:c.4201C>T	p.Gln1401Ter	p.Q1401*	ENST00000324856	NM_006015.4	1401	Cag/Tag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56167767	56167768	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0030696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	71	438	0	ENST00000399503.3:c.1333_1334insCA	p.Ile445ThrfsTer43	p.I445Tfs*43	ENST00000399503	NM_005921.1	444	-/AC																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178672	56178673	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	46	259	0	ENST00000399503.3:c.3646dupA	p.Ile1216AsnfsTer23	p.I1216Nfs*23	ENST00000399503	NM_005921.1	1215	-/A																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0030706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1380	1869	546	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs757274881		P-0030706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	535	707	2	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518279	187518279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	71	302	0	ENST00000441802.2:c.12415G>A	p.Gly4139Arg	p.G4139R	ENST00000441802	NM_005245.3	4139	Ggg/Agg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0030717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	386	480	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
BRAF	673	MSKCC	GRCh37	7	140487359	140487359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	231	693	0	ENST00000288602.6:c.1166G>A	p.Arg389His	p.R389H	ENST00000288602	NM_004333.4	389	cGt/cAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884478	151884478	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	47	461	0	ENST00000262189.6:c.4877A>C	p.Asn1626Thr	p.N1626T	ENST00000262189	NM_170606.2	1626	aAt/aCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	241	466	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	67	393	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CIC	23152	MSKCC	GRCh37	19	42791797	42791797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	479	556	0	ENST00000575354.2:c.683G>A	p.Arg228Gln	p.R228Q	ENST00000575354	NM_015125.3	228	cGg/cAg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046944	128046946	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0030721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	222	513	8	ENST00000285398.2:c.789_791del	p.Glu264del	p.E264del	ENST00000285398	NM_000122.1	263	gaAGAg/gag																																																																															
MGA	23269	MSKCC	GRCh37	15	42052633	42052633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	126	420	0	ENST00000219905.7:c.7304G>A	p.Arg2435Gln	p.R2435Q	ENST00000219905	NM_001164273.1	2435	cGg/cAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101194	41101194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	72	504	0	ENST00000373198.4:c.1162C>A	p.His388Asn	p.H388N	ENST00000373198	NM_133170.3	388	Cat/Aat																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0030639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	378	601	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922321	178922321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	117	471	0	ENST00000263967.3:c.1090G>A	p.Gly364Arg	p.G364R	ENST00000263967	NM_006218.2	364	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112137082	112137082	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0030639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	254	314	0	ENST00000257430.4:c.834+2T>C		p.X278_splice	ENST00000257430	NM_000038.5	278																																																																																
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs878854073		P-0030639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	285	454	0	ENST00000269305.4:c.673-1G>A		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
PGR	5241	MSKCC	GRCh37	11	100922221	100922221	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	315	474	0	ENST00000325455.5:c.2291G>T	p.Gly764Val	p.G764V	ENST00000325455	NM_001202474.3	764	gGa/gTa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861791	57861791	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	151	468	0	ENST00000228682.2:c.1092del	p.Cys364Ter	p.C364*	ENST00000228682	NM_005269.2	364	tgT/tg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0030651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	25	544	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577496	7577501	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACCTG	GACCTG	-			P-0030652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	59	518	0	ENST00000269305.4:c.780_782+3del		p.X260_splice	ENST00000269305	NM_001126112.2	260																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	178	521	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	141	371	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0030657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	195	530	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117790	70117790	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	289	587	0	ENST00000245479.2:c.258G>A	p.Trp86Ter	p.W86*	ENST00000245479	NM_000346.3	86	tgG/tgA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411411	63411411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	247	665	0	ENST00000330258.3:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000330258	NM_152424.3	586	Cga/Tga																																																																															
RECQL	5965	MSKCC	GRCh37	12	21627910	21627910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	149	490	0	ENST00000421138.2:c.1220G>A	p.Arg407Gln	p.R407Q	ENST00000421138		407	cGa/cAa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111475	8111476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	249	567	0	ENST00000346208.3:c.962dupA	p.Thr322AspfsTer30	p.T322Dfs*30	ENST00000346208		321	cag/cAag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641388	18641389	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	165	265	0	ENST00000266497.5:c.2393dup	p.Asn798LysfsTer5	p.N798Kfs*5	ENST00000266497		796	cta/ctAa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17941419	17941419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	100	600	2	ENST00000458235.1:c.2989G>A	p.Glu997Lys	p.E997K	ENST00000458235	NM_000215.3	997	Gaa/Aaa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139760	55139760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	97	535	2	ENST00000257290.5:c.1421C>T	p.Thr474Met	p.T474M	ENST00000257290	NM_006206.4	474	aCg/aTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508490	106508490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	20	231	0	ENST00000359195.3:c.484G>A	p.Val162Ile	p.V162I	ENST00000359195	NM_002649.2	162	Gtc/Atc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138423304	138423304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	34	411	0	ENST00000289153.2:c.1562G>A	p.Ser521Asn	p.S521N	ENST00000289153	NM_006219.2	521	aGt/aAt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156841488	156841488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	14	547	0	ENST00000524377.1:c.791C>T	p.Thr264Met	p.T264M	ENST00000524377	NM_002529.3	264	aCg/aTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435378	18435378	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	13	307	0	ENST00000266497.5:c.363T>A	p.Asn121Lys	p.N121K	ENST00000266497		121	aaT/aaA																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44913196	44913196	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	13	224	0	ENST00000377967.4:c.871G>T	p.Gly291Ter	p.G291*	ENST00000377967	NM_021140.2	291	Gga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0030630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	179	336	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	47	213	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	36	280	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827892	40827892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	75	327	0	ENST00000373198.4:c.2536G>A	p.Val846Ile	p.V846I	ENST00000373198	NM_133170.3	846	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0030630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	68	403	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
PGR	5241	MSKCC	GRCh37	11	100998516	100998516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	74	411	2	ENST00000325455.5:c.1286C>T	p.Ala429Val	p.A429V	ENST00000325455	NM_001202474.3	429	gCg/gTg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026322	48026322	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	52	357	0	ENST00000234420.5:c.1201del	p.Asp401IlefsTer10	p.D401Ifs*10	ENST00000234420	NM_000179.2	400	gaG/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0030631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	100	587	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0030631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	63	313	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	157	742	0	ENST00000374672.4:c.1225A>C	p.Lys409Gln	p.K409Q	ENST00000374672	NM_004235.4	409	Aag/Cag																																																																															
CDH1	999	MSKCC	GRCh37	16	68862158	68862168	+	frameshift_variant	Frame_Shift_Del	DEL	GGGACAACGTT	GGGACAACGTT	-			P-0030631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	95	457	0	ENST00000261769.5:c.2246_2256del	p.Arg749LeufsTer4	p.R749Lfs*4	ENST00000261769	NM_004360.3	749	cGGGACAACGTT/c																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905098	50905098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1753	262	1077	1	ENST00000440232.2:c.380C>T	p.Ala127Val	p.A127V	ENST00000440232	NM_002691.3	127	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579524	7579540	+	frameshift_variant	Frame_Shift_Del	DEL	TGAACCATTGTTCAATA	TGAACCATTGTTCAATA	-			P-0013299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	249	616	0	ENST00000269305.4:c.147_163del	p.Ile50Ter	p.I50*	ENST00000269305	NM_001126112.2	49	gaTATTGAACAATGGTTCAct/gact																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	110	382	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0030540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	190	526	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs149680468		P-0030540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	211	370	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912143	114912145	+	frameshift_variant	Frame_Shift_Ins	INS	AAG	AAG	CTTC			P-0030540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	212	477	0	ENST00000543371.1:c.1213_1215delinsCTTC	p.Lys405LeufsTer18	p.K405Lfs*18	ENST00000543371	NM_001198531.1	405	AAG/CTTC																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140166	50140166	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	212	446	0	ENST00000246792.3:c.259C>G	p.Gln87Glu	p.Q87E	ENST00000246792	NM_006270.3	87	Cag/Gag																																																																															
MED12	9968	MSKCC	GRCh37	X	70343531	70343531	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	115	503	0	ENST00000374080.3:c.1705G>T	p.Val569Phe	p.V569F	ENST00000374080		569	Gtc/Ttc																																																																															
ATRX	546	MSKCC	GRCh37	X	76949404	76949404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	27	321	1	ENST00000373344.5:c.393G>T	p.Glu131Asp	p.E131D	ENST00000373344	NM_000489.3	131	gaG/gaT																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0030541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	239	482	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0030541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	206	388	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
MSH6	2956	MSKCC	GRCh37	2	48033653	48033656	+	frameshift_variant	Frame_Shift_Del	DEL	ATTC	ATTC	-			P-0030541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	65	492	0	ENST00000234420.5:c.3867_3870del	p.Phe1289LeufsTer37	p.F1289Lfs*37	ENST00000234420	NM_000179.2	1288	aaATTC/aa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0030543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	45	403	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0030594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	99	578	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0030594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	177	708	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16041492	16041492	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	59	253	0	ENST00000268712.3:c.1387G>T	p.Ala463Ser	p.A463S	ENST00000268712	NM_006311.3	463	Gca/Tca																																																																															
ALK	238	MSKCC	GRCh37	2	29606709	29606709	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	126	422	0	ENST00000389048.3:c.1171G>T	p.Gly391Ter	p.G391*	ENST00000389048	NM_004304.4	391	Gga/Tga																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182264	38182264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	111	426	0	ENST00000396334.3:c.700G>T	p.Val234Leu	p.V234L	ENST00000396334	NM_002468.4	234	Gtg/Ttg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176694608	176694608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	51	357	0	ENST00000439151.2:c.5192G>T	p.Arg1731Leu	p.R1731L	ENST00000439151	NM_022455.4	1731	cGt/cTt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117642438	117642438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	131	557	0	ENST00000368508.3:c.5761G>A	p.Ala1921Thr	p.A1921T	ENST00000368508	NM_002944.2	1921	Gcc/Acc																																																																															
HGF	3082	MSKCC	GRCh37	7	81388034	81388034	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	74	434	0	ENST00000222390.5:c.341A>T	p.His114Leu	p.H114L	ENST00000222390	NM_000601.4	114	cAt/cTt																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	150	288	0	ENST00000374080.3:c.3670C>G	p.Leu1224Val	p.L1224V	ENST00000374080		1224	Ctc/Gtc																																																																															
MGA	23269	MSKCC	GRCh37	15	42041031	42041031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	146	505	0	ENST00000219905.7:c.5411del	p.Pro1804LeufsTer34	p.P1804Lfs*34	ENST00000219905	NM_001164273.1	1803	caC/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0029428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	33	629	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243926	41243926	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0029428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	30	595	1	ENST00000357654.3:c.3622A>T	p.Lys1208Ter	p.K1208*	ENST00000357654	NM_007294.3	1208	Aaa/Taa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0030462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	265	633	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0030462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	183	532	1	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7978948	7978948	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	216	526	0	ENST00000319144.4:c.1619T>C	p.Ile540Thr	p.I540T	ENST00000319144	NM_001139.2	540	aTa/aCa																																																																															
AKT2	208	MSKCC	GRCh37	19	40761126	40761127	+	inframe_insertion	In_Frame_Ins	INS	-	-	TATGACAAAGGTGTTGGGTCGCGGCCTCTCGGTCTTCATCAGCTT			P-0030462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	140	746	0	ENST00000392038.2:c.225_226insAAGCTGATGAAGACCGAGAGGCCGCGACCCAACACCTTTGTCATA	p.Ile75_Arg76insLysLeuMetLysThrGluArgProArgProAsnThrPheValIle	p.I75_R76insKLMKTERPRPNTFVI	ENST00000392038	NM_001626.4	75	-/AAGCTGATGAAGACCGAGAGGCCGCGACCCAACACCTTTGTCATA																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742998	145742998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	41	57	0	ENST00000428558.2:c.106G>A	p.Glu36Lys	p.E36K	ENST00000428558	NM_004260.3	36	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0030463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	167	331	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	472	649	3	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7572971	7572971	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	282	413	0	ENST00000269305.4:c.1138del	p.His380IlefsTer42	p.H380Ifs*42	ENST00000269305	NM_001126112.2	380	Cat/at																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39637946	39637946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	138	490	0	ENST00000262039.4:c.2363G>A	p.Gly788Glu	p.G788E	ENST00000262039	NM_002647.2	788	gGg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112174154	112174154	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	67	405	0	ENST00000257430.4:c.2863G>T	p.Glu955Ter	p.E955*	ENST00000257430	NM_000038.5	955	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	57	605	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	16	233	0	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	14	307	0	ENST00000250448.2:c.798C>G	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435971	49435971	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	37	664	2	ENST00000301067.7:c.6010C>T	p.Gln2004Ter	p.Q2004*	ENST00000301067	NM_003482.3	2004	Cag/Tag																																																																															
TET2	54790	MSKCC	GRCh37	4	106158499	106158501	+	frameshift_variant	Frame_Shift_Del	DEL	AGA	AGA	GT			P-0030472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	18	371	1	ENST00000380013.4:c.3400_3402delinsGT	p.Arg1134ValfsTer3	p.R1134Vfs*3	ENST00000380013	NM_001127208.2	1134	AGA/GT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0030496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	306	533	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112173968	112173968	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	172	359	0	ENST00000257430.4:c.2677G>T	p.Glu893Ter	p.E893*	ENST00000257430	NM_000038.5	893	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0030496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	50	325	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332916	153332916	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	78	270	1	ENST00000281708.4:c.40C>T	p.Arg14Ter	p.R14*	ENST00000281708	NM_033632.3	14	Cga/Tga																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18573889	18573889	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	164	399	0	ENST00000266497.5:c.2209del	p.Ile737PhefsTer9	p.I737Ffs*9	ENST00000266497		736	gAa/ga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829647	72829647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	240	531	1	ENST00000268489.5:c.6934C>T	p.Arg2312Trp	p.R2312W	ENST00000268489	NM_006885.3	2312	Cgg/Tgg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660462	227660462	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143760685		P-0030496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	43	410	0	ENST00000305123.5:c.2993G>A	p.Arg998His	p.R998H	ENST00000305123	NM_005544.2	998	cGt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247337	153247337	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	85	311	0	ENST00000281708.4:c.1465G>T	p.Glu489Ter	p.E489*	ENST00000281708	NM_033632.3	489	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578277	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0030513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	170	596	3	ENST00000269305.4:c.572_574del	p.Pro191del	p.P191del	ENST00000269305	NM_001126112.2	191	cCTCag/cag																																																																															
RB1	5925	MSKCC	GRCh37	13	48951087	48951088	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0030513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	64	275	0	ENST00000267163.4:c.1251_1252delAA	p.Arg418SerfsTer9	p.R418Sfs*9	ENST00000267163	NM_000321.2	417	AAa/a																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0030513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	105	345	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350213	15350213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	289	659	0	ENST00000263377.2:c.3566C>T	p.Ala1189Val	p.A1189V	ENST00000263377	NM_058243.2	1189	gCg/gTg																																																																															
BCL6	604	MSKCC	GRCh37	3	187451406	187451406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	181	393	1	ENST00000232014.4:c.76C>T	p.Arg26Trp	p.R26W	ENST00000232014	NM_001130845.1	26	Cgg/Tgg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384650	31384651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756395138		P-0030513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	90	613	1	ENST00000328111.2:c.1359dup	p.Leu454AlafsTer11	p.L454Afs*11	ENST00000328111	NM_006892.3	451	gag/gaGg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0030513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	182	671	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134999	2134999	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs74363455		P-0030513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	275	706	0	ENST00000219476.3:c.4541C>A	p.Ser1514Ter	p.S1514*	ENST00000219476	NM_000548.3	1514	tCa/tAa																																																																															
BCL2	596	MSKCC	GRCh37	18	60985395	60985395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	130	638	0	ENST00000333681.4:c.505C>A	p.Leu169Met	p.L169M	ENST00000333681		169	Ctg/Atg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11027167	11027167	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	163	634	0	ENST00000327064.4:c.932A>T	p.Asn311Ile	p.N311I	ENST00000327064	NM_199141.1	311	aAc/aTc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287787	33287787	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0030513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	320	655	0	ENST00000374542.5:c.1465+1G>A		p.X489_splice	ENST00000374542	NM_001141970.1	489																																																																																
SYK	6850	MSKCC	GRCh37	9	93637013	93637013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	150	364	0	ENST00000375746.1:c.1063C>T	p.Pro355Ser	p.P355S	ENST00000375746	NM_001174167.1	355	Ccc/Tcc																																																																															
CDH1	999	MSKCC	GRCh37	16	68867234	68867234	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0030553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	193	394	0	ENST00000261769.5:c.2481T>A	p.Tyr827Ter	p.Y827*	ENST00000261769	NM_004360.3	827	taT/taA																																																																															
RARA	5914	MSKCC	GRCh37	17	38506115	38506115	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	128	548	0	ENST00000254066.5:c.407C>G	p.Thr136Ser	p.T136S	ENST00000254066	NM_000964.3	136	aCc/aGc																																																																															
KDR	3791	MSKCC	GRCh37	4	55976672	55976672	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	122	529	0	ENST00000263923.4:c.1153A>G	p.Ile385Val	p.I385V	ENST00000263923	NM_002253.2	385	Att/Gtt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	184	438	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	235	538	0	ENST00000269305.4:c.856G>C	p.Glu286Gln	p.E286Q	ENST00000269305	NM_001126112.2	286	Gaa/Caa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467924	50467924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	152	335	1	ENST00000331340.3:c.1159G>A	p.Glu387Lys	p.E387K	ENST00000331340	NM_006060.4	387	Gag/Aag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262096	10262096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	170	447	0	ENST00000340748.4:c.2195C>T	p.Ser732Phe	p.S732F	ENST00000340748		732	tCt/tTt																																																																															
B2M	567	MSKCC	GRCh37	15	45007747	45007747	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	146	343	0	ENST00000558401.1:c.194G>C	p.Arg65Thr	p.R65T	ENST00000558401	NM_004048.2	65	aGa/aCa																																																																															
NF1	4763	MSKCC	GRCh37	17	29576105	29576105	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	189	395	0	ENST00000358273.4:c.4078C>T	p.Gln1360Ter	p.Q1360*	ENST00000358273	NM_001042492.2	1360	Caa/Taa																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115273164	115273164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	206	457	0	ENST00000438362.2:c.1294C>T	p.His432Tyr	p.H432Y	ENST00000438362	NM_001242891.1	432	Cat/Tat																																																																															
PARP1	142	MSKCC	GRCh37	1	226578115	226578115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	157	355	0	ENST00000366794.5:c.613G>A	p.Glu205Lys	p.E205K	ENST00000366794	NM_001618.3	205	Gaa/Aaa																																																																															
ATM	472	MSKCC	GRCh37	11	108143274	108143274	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	101	315	0	ENST00000278616.4:c.3093G>C	p.Glu1031Asp	p.E1031D	ENST00000278616	NM_000051.3	1031	gaG/gaC																																																																															
CDH1	999	MSKCC	GRCh37	16	68845617	68845618	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0030611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	151	464	0	ENST00000261769.5:c.863_864delAC	p.Asp288GlyfsTer4	p.D288Gfs*4	ENST00000261769	NM_004360.3	288	gAC/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7577065	7577065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	246	520	0	ENST00000269305.4:c.873G>T	p.Lys291Asn	p.K291N	ENST00000269305	NM_001126112.2	291	aaG/aaT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220993	36220993	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	253	451	0	ENST00000222270.7:c.5043C>G	p.Phe1681Leu	p.F1681L	ENST00000222270	NM_014727.1	1681	ttC/ttG																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519430	137519430	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	114	232	0	ENST00000367739.4:c.1208C>A	p.Ser403Tyr	p.S403Y	ENST00000367739	NM_000416.2	403	tCt/tAt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206807	162206807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	161	385	0	ENST00000366898.1:c.868G>A	p.Val290Met	p.V290M	ENST00000366898	NM_004562.2	290	Gtg/Atg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2977615	2977615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	246	624	0	ENST00000396946.4:c.1069G>A	p.Asp357Asn	p.D357N	ENST00000396946	NM_032415.4	357	Gac/Aac																																																																															
MED12	9968	MSKCC	GRCh37	X	70361131	70361131	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	34	529	1	ENST00000374080.3:c.6319C>T	p.Gln2107Ter	p.Q2107*	ENST00000374080		2107	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602620	10602620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	344	508	2	ENST00000171111.5:c.958C>T	p.Arg320Trp	p.R320W	ENST00000171111	NM_203500.1	320	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579582	7579583	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	377	501	0	ENST00000269305.4:c.104dup	p.Leu35PhefsTer8	p.L35Ffs*8	ENST00000269305	NM_001126112.2	35	ttg/ttTg																																																																															
RB1	5925	MSKCC	GRCh37	13	48937094	48937094	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	149	233	1	ENST00000267163.4:c.861+1G>A		p.X287_splice	ENST00000267163	NM_000321.2	287																																																																																
FH	2271	MSKCC	GRCh37	1	241667399	241667399	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	128	392	0	ENST00000366560.3:c.1051T>C	p.Ser351Pro	p.S351P	ENST00000366560	NM_000143.3	351	Tca/Cca																																																																															
SDHD	6392	MSKCC	GRCh37	11	111965561	111965561	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	98	176	0	ENST00000375549.3:c.347A>G	p.His116Arg	p.H116R	ENST00000375549	NM_003002.3	116	cAt/cGt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12037400	12037400	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	331	516	0	ENST00000396373.4:c.1031A>G	p.Tyr344Cys	p.Y344C	ENST00000396373	NM_001987.4	344	tAc/tGc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73336101	73336101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	179	218	0	ENST00000377767.4:c.2302G>C	p.Ala768Pro	p.A768P	ENST00000377767	NM_014953.3	768	Gcg/Ccg																																																																															
MGA	23269	MSKCC	GRCh37	15	42041662	42041662	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	286	476	0	ENST00000219905.7:c.5857A>T	p.Lys1953Ter	p.K1953*	ENST00000219905	NM_001164273.1	1953	Aag/Tag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43720315	43720315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	329	485	1	ENST00000382044.4:c.3727C>A	p.Arg1243Ser	p.R1243S	ENST00000382044	NM_001141980.1	1243	Cgt/Agt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680727	88680727	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	319	531	0	ENST00000360948.2:c.530A>T	p.Gln177Leu	p.Q177L	ENST00000360948	NM_001012338.2	177	cAg/cTg																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348794	11348794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	78	173	0	ENST00000332029.2:c.542G>A	p.Arg181His	p.R181H	ENST00000332029	NM_003745.1	181	cGc/cAc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190742095	190742095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	130	432	0	ENST00000441310.2:c.2732A>C	p.Glu911Ala	p.E911A	ENST00000441310	NM_000534.4	911	gAa/gCa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098910	47098910	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	310	534	0	ENST00000409792.3:c.6364C>G	p.Arg2122Gly	p.R2122G	ENST00000409792	NM_014159.6	2122	Cgg/Ggg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134885815	134885815	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1223	152	427	0	ENST00000398015.3:c.1726A>T	p.Ser576Cys	p.S576C	ENST00000398015	NM_004441.4	576	Agc/Tgc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933311	39933311	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	190	589	0	ENST00000378444.4:c.1288C>A	p.Gln430Lys	p.Q430K	ENST00000378444	NM_001123385.1	430	Cag/Aag																																																																															
MED12	9968	MSKCC	GRCh37	X	70340976	70340976	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	150	436	0	ENST00000374080.3:c.709G>T	p.Glu237Ter	p.E237*	ENST00000374080		237	Gag/Tag																																																																															
ATRX	546	MSKCC	GRCh37	X	76939495	76939495	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	267	474	0	ENST00000373344.5:c.1253G>T	p.Arg418Leu	p.R418L	ENST00000373344	NM_000489.3	418	cGa/cTa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552891	106552891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	77	795	2	ENST00000369096.4:c.856C>T	p.Arg286Cys	p.R286C	ENST00000369096	NM_001198.3	286	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0030616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	242	782	2	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350251	15350251	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	88	701	0	ENST00000263377.2:c.3528C>G	p.Asp1176Glu	p.D1176E	ENST00000263377	NM_058243.2	1176	gaC/gaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0030491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	336	592	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
STK40	83931	MSKCC	GRCh37	1	36807481	36807481	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	194	562	0	ENST00000373129.3:c.1183G>T	p.Ala395Ser	p.A395S	ENST00000373129	NM_032017.1	395	Gcc/Tcc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7982800	7982800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	1068	679	0	ENST00000319144.4:c.985C>T	p.Leu329Phe	p.L329F	ENST00000319144	NM_001139.2	329	Ctc/Ttc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119720947	119720947	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	198	470	0	ENST00000316626.5:c.228T>G	p.Cys76Trp	p.C76W	ENST00000316626		76	tgT/tgG																																																																															
FYN	2534	MSKCC	GRCh37	6	112025256	112025257	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0030493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	208	457	0	ENST00000368678.4:c.492_493delinsAA	p.Ser165Thr	p.S165T	ENST00000368678		164	ttGTcc/ttAAcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	258	606	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	130	620	0	ENST00000269305.4:c.770T>A	p.Leu257Gln	p.L257Q	ENST00000269305	NM_001126112.2	257	cTg/cAg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900635	32900635	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	97	329	1	ENST00000380152.3:c.517-1G>T		p.X173_splice	ENST00000380152		173																																																																																
PRKAR1A	5573	MSKCC	GRCh37	17	66522048	66522048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	91	226	0	ENST00000358598.2:c.703C>T	p.Leu235Phe	p.L235F	ENST00000358598	NM_212471.2	235	Ctc/Ttc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115266564	115266564	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	211	608	0	ENST00000438362.2:c.1951delC	p.Leu651Ter	p.L651*	ENST00000438362	NM_001242891.1	651	Ctg/tg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	406269	406269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	313	501	1	ENST00000399788.2:c.4172G>T	p.Trp1391Leu	p.W1391L	ENST00000399788	NM_001042603.1	1391	tGg/tTg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28592687	28592687	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	174	630	0	ENST00000241453.7:c.2458A>C	p.Thr820Pro	p.T820P	ENST00000241453	NM_004119.2	820	Acc/Ccc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288876	15288876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	91	201	0	ENST00000263388.2:c.3863G>T	p.Arg1288Leu	p.R1288L	ENST00000263388	NM_000435.2	1288	cGg/cTg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085908	16085908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	46	571	0	ENST00000281043.3:c.1084G>T	p.Val362Phe	p.V362F	ENST00000281043	NM_005378.4	362	Gtc/Ttc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49935545	49935545	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	301	711	0	ENST00000296474.3:c.1819C>A	p.His607Asn	p.H607N	ENST00000296474	NM_002447.2	607	Cat/Aat																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259595	89259595	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	115	326	0	ENST00000336596.2:c.739G>T	p.Glu247Ter	p.E247*	ENST00000336596	NM_005233.5	247	Gaa/Taa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729441	41729441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	59	528	0	ENST00000242208.4:c.1088G>A	p.Gly363Glu	p.G363E	ENST00000242208	NM_002192.2	363	gGg/gAg																																																																															
BTK	695	MSKCC	GRCh37	X	100630236	100630236	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	149	179	0	ENST00000308731.7:c.37C>G	p.Arg13Gly	p.R13G	ENST00000308731	NM_000061.2	13	Cga/Gga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	62	586	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0030542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	180	409	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910647	29910647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	69	725	0	ENST00000376809.5:c.187G>A	p.Asp63Asn	p.D63N	ENST00000376809	NM_002116.7	63	Gac/Aac																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38614484	38614484	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	51	417	0	ENST00000299084.4:c.251del	p.Lys84ArgfsTer37	p.K84Rfs*37	ENST00000299084	NM_152594.2	84	Aag/ag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2122248	2122248	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	54	445	0	ENST00000219476.3:c.2104G>C	p.Asp702His	p.D702H	ENST00000219476	NM_000548.3	702	Gac/Cac																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910661	29910661	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	73	755	0	ENST00000376809.5:c.201G>C	p.Gln67His	p.Q67H	ENST00000376809	NM_002116.7	67	caG/caC																																																																															
XIAP	331	MSKCC	GRCh37	X	123019935	123019935	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	63	521	0	ENST00000355640.3:c.423G>C	p.Leu141Phe	p.L141F	ENST00000355640		141	ttG/ttC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0030545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	208	343	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060780	38060797	+	inframe_deletion	In_Frame_Del	DEL	GTTGATGGAGAACGGGTG	GTTGATGGAGAACGGGTG	-			P-0030545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	169	672	0	ENST00000250448.2:c.1192_1209del	p.His398_Asn403del	p.H398_N403del	ENST00000250448	NM_004496.3	398	CACCCGTTCTCCATCAAC/-																																																																															
AKT3	10000	MSKCC	GRCh37	1	243727084	243727084	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	21	402	0	ENST00000263826.5:c.886G>C	p.Gly296Arg	p.G296R	ENST00000263826	NM_005465.4	296	Ggg/Cgg																																																																															
POLE	5426	MSKCC	GRCh37	12	133219510	133219510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	46	591	0	ENST00000320574.5:c.4624G>A	p.Gly1542Ser	p.G1542S	ENST00000320574	NM_006231.2	1542	Ggc/Agc																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793488	89793488	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	42	272	0	ENST00000336032.3:c.557T>A	p.Met186Lys	p.M186K	ENST00000336032	NM_006813.2	186	aTg/aAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	106	312	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577520	7577520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	156	451	0	ENST00000269305.4:c.761T>A	p.Ile254Asn	p.I254N	ENST00000269305	NM_001126112.2	254	aTc/aAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105809	27105810	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	69	349	0	ENST00000324856.7:c.5421dup	p.Lys1808Ter	p.K1808*	ENST00000324856	NM_006015.4	1807	agt/agTt																																																																															
YES1	7525	MSKCC	GRCh37	18	742978	742978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	33	353	0	ENST00000314574.4:c.1000C>T	p.Pro334Ser	p.P334S	ENST00000314574	NM_005433.3	334	Cca/Tca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0030560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	81	454	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0030560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	158	522	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0030560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	178	570	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																															
REL	5966	MSKCC	GRCh37	2	61149574	61149574	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	105	368	0	ENST00000295025.8:c.1764T>A	p.Ser588Arg	p.S588R	ENST00000295025	NM_002908.2	588	agT/agA																																																																															
TET2	54790	MSKCC	GRCh37	4	106155460	106155460	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	72	376	0	ENST00000380013.4:c.361G>T	p.Glu121Ter	p.E121*	ENST00000380013	NM_001127208.2	121	Gaa/Taa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041399	47041399	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	217	655	1	ENST00000329236.7:c.1509C>A	p.Tyr503Ter	p.Y503*	ENST00000329236	NM_001204466.1	503	taC/taA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	211	490	2	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0030562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	170	431	2	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578283	7578283	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	160	570	0	ENST00000269305.4:c.566C>A	p.Ala189Asp	p.A189D	ENST00000269305	NM_001126112.2	189	gCc/gAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133249808	133249808	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	73	516	0	ENST00000320574.5:c.1415A>C	p.Lys472Thr	p.K472T	ENST00000320574	NM_006231.2	472	aAg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578484	7578484	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	287	760	0	ENST00000269305.4:c.446C>A	p.Ser149Tyr	p.S149Y	ENST00000269305	NM_001126112.2	149	tCc/tAc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131361	17131361	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	204	693	0	ENST00000285071.4:c.91C>T	p.Gln31Ter	p.Q31*	ENST00000285071	NM_144997.5	31	Caa/Taa																																																																															
KDR	3791	MSKCC	GRCh37	4	55961000	55961000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	61	441	0	ENST00000263923.4:c.2940G>T	p.Glu980Asp	p.E980D	ENST00000263923	NM_002253.2	980	gaG/gaT																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38946648	38946648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	28	302	0	ENST00000357387.3:c.4321G>A	p.Asp1441Asn	p.D1441N	ENST00000357387	NM_152756.3	1441	Gat/Aat																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545714	106545714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	91	594	1	ENST00000359195.3:c.3191C>T	p.Ala1064Val	p.A1064V	ENST00000359195	NM_002649.2	1064	gCt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0030563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	13	351	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	202	482	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424164	49424164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	109	475	1	ENST00000301067.7:c.13898C>T	p.Ser4633Leu	p.S4633L	ENST00000301067	NM_003482.3	4633	tCg/tTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831414	72831414	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	127	426	0	ENST00000268489.5:c.5167C>A	p.Gln1723Lys	p.Q1723K	ENST00000268489	NM_006885.3	1723	Cag/Aag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492911	56492942	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	CCAGCTGCAGCTGGTGGCCACCACTCATGCTA	CCAGCTGCAGCTGGTGGCCACCACTCATGCTA	-			P-0030483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	129	214	0	ENST00000407977.2:c.-4_28del		p.*2*	ENST00000407977		2																																																																																
AXIN2	8313	MSKCC	GRCh37	17	63545652	63545652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	97	445	1	ENST00000307078.5:c.942G>A	p.Met314Ile	p.M314I	ENST00000307078	NM_004655.3	314	atG/atA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	201	503	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508614	106508614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	80	537	1	ENST00000359195.3:c.608C>T	p.Thr203Met	p.T203M	ENST00000359195	NM_002649.2	203	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0029719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	94	579	0	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
FGF3	2248	MSKCC	GRCh37	11	69633556	69633556	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	26	257	0	ENST00000334134.2:c.146A>G	p.Tyr49Cys	p.Y49C	ENST00000334134	NM_005247.2	49	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577148	7577148	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1060501194		P-0030297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	302	545	0	ENST00000269305.4:c.790del	p.Leu264TyrfsTer81	p.L264Yfs*81	ENST00000269305	NM_001126112.2	264	Cta/ta																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120169	70120169	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	413	374	0	ENST00000245479.2:c.1171C>T	p.Gln391Ter	p.Q391*	ENST00000245479	NM_000346.3	391	Cag/Tag																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112915739	112915740	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGAAT			P-0030297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	101	493	0	ENST00000351677.2:c.1013_1017dup	p.Asp340Ter	p.D340*	ENST00000351677	NM_002834.3	338	gtg/gTGAATtg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561134	9561134	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	97	492	0	ENST00000353224.5:c.648G>C	p.Lys216Asn	p.K216N	ENST00000353224	NM_177990.2	216	aaG/aaC																																																																															
APC	324	MSKCC	GRCh37	5	112136974	112136975	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0030297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	184	421	0	ENST00000257430.4:c.730_731del		p.X244_splice	ENST00000257430	NM_000038.5	244																																																																																
SPOP	8405	MSKCC	GRCh37	17	47696433	47696433	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	257	478	0	ENST00000347630.2:c.390C>G	p.Asp130Glu	p.D130E	ENST00000347630	NM_001007230.1	130	gaC/gaG																																																																															
VHL	7428	MSKCC	GRCh37	3	10191587	10191599	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCAGAAAGACC	GTGCAGAAAGACC	-			P-0030377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	341	473	0	ENST00000256474.2:c.580_592del	p.Val194TrpfsTer4	p.V194Wfs*4	ENST00000256474	NM_000551.3	194	GTGCAGAAAGACCtg/tg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	137	435	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0030379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	224	512	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
CDH1	999	MSKCC	GRCh37	16	68835780	68835781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	128	413	0	ENST00000261769.5:c.377dup	p.Pro127AlafsTer41	p.P127Afs*41	ENST00000261769	NM_004360.3	124	cgc/cgCc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238944	5238944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	67	287	1	ENST00000357368.4:c.1835G>A	p.Arg612His	p.R612H	ENST00000357368	NM_002850.3	612	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101527	27101528	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCTCCATTCCTGCACTCCAT			P-0030379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	151	496	0	ENST00000324856.7:c.4826_4827insCATTCTCCATTCCTGCACTC	p.Gly1610IlefsTer9	p.G1610Ifs*9	ENST00000324856	NM_006015.4	1603	-/TCTCCATTCCTGCACTCCAT																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46736349	46736349	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	32	326	0	ENST00000371975.4:c.1061A>C	p.Lys354Thr	p.K354T	ENST00000371975	NM_003579.3	354	aAg/aCg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115927	8115930	+	frameshift_variant	Frame_Shift_Del	DEL	CCAT	CCAT	-			P-0030379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	97	294	0	ENST00000346208.3:c.1276_1279del	p.Ser426AlafsTer48	p.S426Afs*48	ENST00000346208		425	CCATcc/cc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740636	58740642	+	frameshift_variant	Frame_Shift_Del	DEL	AGATGTC	AGATGTC	-			P-0030379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	112	522	0	ENST00000305921.3:c.1542_1548del	p.Met515LeufsTer5	p.M515Lfs*5	ENST00000305921	NM_003620.3	514	aAGATGTCa/aa																																																																															
CASP8	841	MSKCC	GRCh37	2	202137500	202137500	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0030379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	129	465	0	ENST00000358485.4:c.727+1G>T		p.X243_splice	ENST00000358485	NM_001080125.1	243																																																																																
ESR1	2099	MSKCC	GRCh37	6	152382149	152382149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	78	296	0	ENST00000206249.3:c.1259G>A	p.Gly420Asp	p.G420D	ENST00000206249	NM_000125.3	420	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175969	112175969	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	168	264	0	ENST00000257430.4:c.4678G>T	p.Glu1560Ter	p.E1560*	ENST00000257430	NM_000038.5	1560	Gaa/Taa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114116	115114116	+	splice_donor_variant	Splice_Site	DEL	A	A	-			P-0030381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	266	374	0	ENST00000257566.3:c.1099+2del		p.X367_splice	ENST00000257566	NM_016569.3	367																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38061847	38061848	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTAG			P-0030381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	373	744	0	ENST00000250448.2:c.138_141dup	p.Met48LeufsTer180	p.M48Lfs*180	ENST00000250448	NM_004496.3	47	-/CTAC																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0030382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	296	599	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174204	112174204	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	170	416	0	ENST00000257430.4:c.2913del	p.Asp971GlufsTer9	p.D971Efs*9	ENST00000257430	NM_000038.5	971	gaT/ga																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139815623	139815623	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	124	562	3	ENST00000247668.2:c.1094G>T	p.Arg365Leu	p.R365L	ENST00000247668	NM_021138.3	365	cGc/cTc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029521	14029521	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202186213		P-0030438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	104	381	0	ENST00000311895.7:c.1732G>A	p.Val578Met	p.V578M	ENST00000311895	NM_005236.2	578	Gtg/Atg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696638	47696638	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	119	553	0	ENST00000347630.2:c.310T>A	p.Phe104Ile	p.F104I	ENST00000347630	NM_001007230.1	104	Ttc/Atc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588255	69588255	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0030438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	38	397	0	ENST00000168712.1:c.445-2A>T		p.X149_splice	ENST00000168712	NM_002007.2	149																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72832015	72832015	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	211	637	0	ENST00000268489.5:c.4566del	p.Arg1523GlufsTer17	p.R1523Efs*17	ENST00000268489	NM_006885.3	1522	aaG/aa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44945146	44945146	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	170	299	0	ENST00000377967.4:c.3470T>G	p.Ile1157Arg	p.I1157R	ENST00000377967	NM_021140.2	1157	aTa/aGa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0030441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	60	453	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579378	7579378	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	134	707	0	ENST00000269305.4:c.309C>A	p.Tyr103Ter	p.Y103*	ENST00000269305	NM_001126112.2	103	taC/taA																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366335	15366335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	67	508	0	ENST00000263377.2:c.1820G>A	p.Cys607Tyr	p.C607Y	ENST00000263377	NM_058243.2	607	tGc/tAc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73350197	73350197	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	29	401	0	ENST00000377767.4:c.688G>C	p.Glu230Gln	p.E230Q	ENST00000377767	NM_014953.3	230	Gag/Cag																																																																															
CDH1	999	MSKCC	GRCh37	16	68845764	68845764	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0030441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	71	428	0	ENST00000261769.5:c.1008+2T>C		p.X336_splice	ENST00000261769	NM_004360.3	336																																																																																
PIK3C3	5289	MSKCC	GRCh37	18	39575912	39575912	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	34	450	0	ENST00000262039.4:c.845C>G	p.Ser282Cys	p.S282C	ENST00000262039	NM_002647.2	282	tCt/tGt																																																																															
CIC	23152	MSKCC	GRCh37	19	42797118	42797118	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	40	835	0	ENST00000575354.2:c.3480G>T	p.Met1160Ile	p.M1160I	ENST00000575354	NM_015125.3	1160	atG/atT																																																																															
ERG	2078	MSKCC	GRCh37	21	39795476	39795476	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	205	521	0	ENST00000288319.7:c.244C>A	p.Pro82Thr	p.P82T	ENST00000288319	NM_182918.3	82	Cct/Act																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927976	178927984	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ACACTGTCC	ACACTGTCC	-			P-0030441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	103	305	0	ENST00000263967.3:c.1255_1263del	p.His419_Pro421del	p.H419_P421del	ENST00000263967	NM_006218.2	418	gaACACTGTCCa/gaa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117714456	117714456	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0030441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	11	453	0	ENST00000368508.3:c.1193C>G	p.Ser398Ter	p.S398*	ENST00000368508	NM_002944.2	398	tCa/tGa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860107	151860107	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	85	471	0	ENST00000262189.6:c.10555del	p.Ser3519HisfsTer14	p.S3519Hfs*14	ENST00000262189	NM_170606.2	3519	Tca/ca																																																																															
AR	367	MSKCC	GRCh37	X	66765038	66765038	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	68	840	1	ENST00000374690.3:c.50A>G	p.Lys17Arg	p.K17R	ENST00000374690	NM_000044.3	17	aAg/aGg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	85	515	0	ENST00000347630.2:c.398T>C	p.Phe133Ser	p.F133S	ENST00000347630	NM_001007230.1	133	tTc/tCc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118366578	118366578	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	58	447	0	ENST00000534358.1:c.5528del	p.Pro1843LeufsTer10	p.P1843Lfs*10	ENST00000534358	NM_005933.3	1843	Cct/ct																																																																															
TOP1	7150	MSKCC	GRCh37	20	39744979	39744979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	29	436	0	ENST00000361337.2:c.1769G>A	p.Arg590His	p.R590H	ENST00000361337	NM_003286.2	590	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579363	7579364	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	190	601	0	ENST00000269305.4:c.323dupG	p.Arg110ProfsTer39	p.R110Pfs*39	ENST00000269305	NM_001126112.2	108	ggt/ggGt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0030457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	181	518	7	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0030457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	59	513	5	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151896442	151896442	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	41	421	0	ENST00000262189.6:c.4195A>G	p.Met1399Val	p.M1399V	ENST00000262189	NM_170606.2	1399	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0030527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	366	616	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0030527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	163	324	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654615	67654615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	237	461	0	ENST00000264010.4:c.1102C>T	p.Arg368Cys	p.R368C	ENST00000264010	NM_006565.3	368	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175594	112175594	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	124	361	0	ENST00000257430.4:c.4303delA	p.Arg1435GlufsTer38	p.R1435Efs*38	ENST00000257430	NM_000038.5	1435	Aga/ga																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671543	30671543	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	225	662	0	ENST00000376406.3:c.5417A>C	p.Lys1806Thr	p.K1806T	ENST00000376406	NM_014641.2	1806	aAg/aCg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348233	348233	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116350678		P-0030529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	51	734	0	ENST00000262320.3:c.1273G>A	p.Gly425Ser	p.G425S	ENST00000262320	NM_003502.3	425	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	70	616	0	ENST00000269305.4:c.584T>G	p.Ile195Ser	p.I195S	ENST00000269305	NM_001126112.2	195	aTc/aGc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675438	30675438	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780670990		P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			302	252	456	1	ENST00000376406.3:c.2918C>T	p.Ala973Val	p.A973V	ENST00000376406	NM_014641.2	973	gCg/gTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			482	168	644	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268144	153268144	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs920052554		P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			449	80	307	0	ENST00000281708.4:c.664C>T	p.Arg222Ter	p.R222*	ENST00000281708	NM_033632.3	222	Cga/Tga																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25457242	25457242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147001633		P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			492	130	504	1	ENST00000264709.3:c.2645G>A	p.Arg882His	p.R882H	ENST00000264709	NM_175629.2	882	cGc/cAc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			441	105	402	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			378	75	279	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
TP63	8626	MSKCC	GRCh37	3	189582168	189582168	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121908835		P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			520	136	435	0	ENST00000264731.3:c.727C>T	p.Arg243Trp	p.R243W	ENST00000264731	NM_003722.4	243	Cgg/Tgg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636818	8636818	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146973770		P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			470	112	391	0	ENST00000356435.5:c.91G>A	p.Val31Ile	p.V31I	ENST00000356435		31	Gtt/Att																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45651264	45651264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			592	155	568	0	ENST00000407780.3:c.761C>T	p.Ala254Val	p.A254V	ENST00000407780	NM_001283052.1	254	gCg/gTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627774	187627774	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			575	117	452	0	ENST00000441802.2:c.3208C>T	p.Arg1070Ter	p.R1070*	ENST00000441802	NM_005245.3	1070	Cga/Tga																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905516	50905516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			560	123	694	2	ENST00000440232.2:c.644C>T	p.Ala215Val	p.A215V	ENST00000440232	NM_002691.3	215	gCg/gTg																																																																															
RHOA	387	MSKCC	GRCh37	3	49412898	49412898	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			652	160	618	0	ENST00000418115.1:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000418115	NM_001664.2	42	tAt/tGt																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793677	89793677	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			525	123	375	0	ENST00000336032.3:c.752del	p.Lys251SerfsTer14	p.K251Sfs*14	ENST00000336032	NM_006813.2	249	gAa/ga																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508401	106508401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			233	52	260	0	ENST00000359195.3:c.395C>T	p.Pro132Leu	p.P132L	ENST00000359195	NM_002649.2	132	cCg/cTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			57	13	57	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
APC	324	MSKCC	GRCh37	5	112173837	112173838	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			390	95	380	0	ENST00000257430.4:c.2547_2548del	p.Asp849GlufsTer62	p.D849Efs*62	ENST00000257430	NM_000038.5	849	gAT/g																																																																															
APC	324	MSKCC	GRCh37	5	112175696	112175696	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			375	78	355	1	ENST00000257430.4:c.4405C>T	p.Gln1469Ter	p.Q1469*	ENST00000257430	NM_000038.5	1469	Caa/Taa																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30253759	30253759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			377	134	418	0	ENST00000307677.4:c.695G>A	p.Arg232Gln	p.R232Q	ENST00000307677	NM_138578.1	232	cGg/cAg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89456460	89456460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			434	98	318	0	ENST00000336596.2:c.1636G>A	p.Ala546Thr	p.A546T	ENST00000336596	NM_005233.5	546	Gcc/Acc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164863	36164863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			610	143	675	3	ENST00000300305.3:c.1012G>A	p.Ala338Thr	p.A338T	ENST00000300305		338	Gcg/Acg																																																																															
TET2	54790	MSKCC	GRCh37	4	106193850	106193850	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			426	82	358	0	ENST00000380013.4:c.4317del	p.Lys1439AsnfsTer9	p.K1439Nfs*9	ENST00000380013	NM_001127208.2	1438	Aaa/aa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741761	145741761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			524	135	623	0	ENST00000428558.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000428558	NM_004260.3	248	Cgt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433388	49433388	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			604	151	645	1	ENST00000301067.7:c.8059C>T	p.Arg2687Ter	p.R2687*	ENST00000301067	NM_003482.3	2687	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			519	103	636	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943749	9943749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			439	114	486	1	ENST00000330684.3:c.1192G>A	p.Asp398Asn	p.D398N	ENST00000330684	NM_001134407.1	398	Gac/Aac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932819	39932819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			222	131	261	1	ENST00000378444.4:c.1780G>A	p.Val594Ile	p.V594I	ENST00000378444	NM_001123385.1	594	Gtt/Att																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2090156	2090156	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148474733		P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			614	147	645	3	ENST00000219066.1:c.793G>A	p.Ala265Thr	p.A265T	ENST00000219066	NM_002528.5	265	Gcc/Acc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753149	42753151	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs199960550		P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			479	102	616	7	ENST00000222329.4:c.1113_1115del	p.Ser373del	p.S373del	ENST00000222329	NM_006494.2	371	tcTTCc/tcc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909730	50909730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			607	139	678	0	ENST00000440232.2:c.1450G>A	p.Glu484Lys	p.E484K	ENST00000440232	NM_002691.3	484	Gag/Aag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737400	145737400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			533	141	595	1	ENST00000428558.2:c.3287G>A	p.Arg1096His	p.R1096H	ENST00000428558	NM_004260.3	1096	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023778	27023778	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			393	110	343	0	ENST00000324856.7:c.884T>G	p.Leu295Arg	p.L295R	ENST00000324856	NM_006015.4	295	cTc/cGc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2954991	2954991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			431	116	491	1	ENST00000396946.4:c.2719G>A	p.Glu907Lys	p.E907K	ENST00000396946	NM_032415.4	907	Gag/Aag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696748	47696748	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			285	88	249	0	ENST00000347630.2:c.201-1G>A		p.X67_splice	ENST00000347630	NM_001007230.1	67																																																																																
STK11	6794	MSKCC	GRCh37	19	1221294	1221294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			566	149	618	1	ENST00000326873.7:c.817G>A	p.Ala273Thr	p.A273T	ENST00000326873	NM_000455.4	273	Gcc/Acc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199618	16199618	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs953954789		P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			465	111	390	0	ENST00000375759.3:c.391C>T	p.Arg131Trp	p.R131W	ENST00000375759	NM_015001.2	131	Cgg/Tgg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64128706	64128706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			478	133	508	0	ENST00000334205.4:c.563C>T	p.Thr188Met	p.T188M	ENST00000334205	NM_003942.2	188	aCg/aTg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67201736	67201736	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			437	107	482	0	ENST00000312629.5:c.1037G>T	p.Arg346Met	p.R346M	ENST00000312629	NM_003952.2	346	aGg/aTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118377145	118377145	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			378	63	348	0	ENST00000534358.1:c.10538C>G	p.Thr3513Ser	p.T3513S	ENST00000534358	NM_005933.3	3513	aCc/aGc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244479	46244479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			515	119	424	0	ENST00000334344.6:c.2573C>T	p.Ala858Val	p.A858V	ENST00000334344	NM_152641.2	858	gCa/gTa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103506134	103506134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			434	116	355	0	ENST00000355739.4:c.292G>A	p.Ala98Thr	p.A98T	ENST00000355739	NM_000123.3	98	Gcg/Acg																																																																															
MGA	23269	MSKCC	GRCh37	15	42041327	42041327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			482	94	438	0	ENST00000219905.7:c.5522G>A	p.Arg1841Gln	p.R1841Q	ENST00000219905	NM_001164273.1	1841	cGg/cAg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348232	348232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			526	137	616	0	ENST00000262320.3:c.1274G>A	p.Gly425Asp	p.G425D	ENST00000262320	NM_003502.3	425	gGc/gAc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632393	3632393	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			574	144	690	0	ENST00000294008.3:c.5455C>T	p.Gln1819Ter	p.Q1819*	ENST00000294008	NM_032444.2	1819	Cag/Tag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3656526	3656526	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199912910		P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			690	162	586	1	ENST00000294008.3:c.709C>T	p.Arg237Trp	p.R237W	ENST00000294008	NM_032444.2	237	Cgg/Tgg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779692	3779692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			450	90	501	1	ENST00000262367.5:c.5356C>T	p.Arg1786Cys	p.R1786C	ENST00000262367	NM_004380.2	1786	Cgc/Tgc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56875731	56875731	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77860880		P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			430	120	397	0	ENST00000308159.5:c.2335G>A	p.Glu779Lys	p.E779K	ENST00000308159	NM_014669.4	779	Gag/Aag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81946260	81946260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			479	116	588	0	ENST00000359376.3:c.1993C>T	p.Arg665Trp	p.R665W	ENST00000359376	NM_002661.3	665	Cgg/Tgg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346855	89346855	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			211	57	298	0	ENST00000301030.4:c.6095C>T	p.Pro2032Leu	p.P2032L	ENST00000301030	NM_001256183.1	2032	cCg/cTg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58711219	58711219	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			630	126	400	0	ENST00000305921.3:c.707T>C	p.Met236Thr	p.M236T	ENST00000305921	NM_003620.3	236	aTg/aCg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78936325	78936325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			469	116	602	0	ENST00000306801.3:c.3757G>A	p.Val1253Met	p.V1253M	ENST00000306801	NM_020761.2	1253	Gtg/Atg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17389780	17389780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			568	150	711	1	ENST00000359435.4:c.913C>T	p.Arg305Trp	p.R305W	ENST00000359435	NM_001033549.1	305	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228119	36228119	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201885107		P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			557	138	606	1	ENST00000222270.7:c.7505C>T	p.Pro2502Leu	p.P2502L	ENST00000222270	NM_014727.1	2502	cCg/cTg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027688	48027691	+	frameshift_variant	Frame_Shift_Del	DEL	ATTG	ATTG	-			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			154	67	152	0	ENST00000234420.5:c.2569_2572del	p.Asp857PhefsTer10	p.D857Ffs*10	ENST00000234420	NM_000179.2	856	ATTGat/at																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99189367	99189367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			581	128	509	0	ENST00000074304.5:c.2623G>A	p.Asp875Asn	p.D875N	ENST00000074304	NM_001134224.1	875	Gac/Aac																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275753	41275753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			536	106	454	0	ENST00000349496.5:c.1648C>T	p.Arg550Cys	p.R550C	ENST00000349496	NM_001904.3	550	Cgt/Tgt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185190866	185190866	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			643	145	579	2	ENST00000265026.3:c.1747C>T	p.Arg583Ter	p.R583*	ENST00000265026	NM_004721.4	583	Cga/Tga																																																																															
TP63	8626	MSKCC	GRCh37	3	189526115	189526115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			636	133	511	0	ENST00000264731.3:c.379G>A	p.Gly127Ser	p.G127S	ENST00000264731	NM_003722.4	127	Ggc/Agc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1956969	1956969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			457	131	553	0	ENST00000382891.5:c.2420C>T	p.Ala807Val	p.A807V	ENST00000382891	NM_133335.3	807	gCc/gTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56170877	56170877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			335	58	270	0	ENST00000399503.3:c.1705G>A	p.Val569Ile	p.V569I	ENST00000399503	NM_005921.1	569	Gtt/Att																																																																															
MSH3	4437	MSKCC	GRCh37	5	80088584	80088585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			565	122	369	0	ENST00000265081.6:c.2582dup	p.Asn861LysfsTer8	p.N861Kfs*8	ENST00000265081	NM_002439.4	859	ata/atAa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681924	30681924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			324	201	370	0	ENST00000376406.3:c.173G>A	p.Arg58Gln	p.R58Q	ENST00000376406	NM_014641.2	58	cGa/cAa																																																																															
TAP1	6890	MSKCC	GRCh37	6	32814921	32814921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			526	301	551	0	ENST00000354258.4:c.2144G>A	p.Arg715Gln	p.R715Q	ENST00000354258	NM_000593.5	715	cGa/cAa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157222613	157222613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			534	109	454	0	ENST00000346085.5:c.1880C>T	p.Ala627Val	p.A627V	ENST00000346085	NM_020732.3	627	gCg/gTg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38314898	38314898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			371	90	411	0	ENST00000425967.3:c.166C>T	p.Pro56Ser	p.P56S	ENST00000425967	NM_001174067.1	56	Ccg/Tcg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046377	69046377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			484	96	453	0	ENST00000288368.4:c.3850G>A	p.Ala1284Thr	p.A1284T	ENST00000288368	NM_024870.2	1284	Gcg/Acg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137313595	137313595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			573	133	728	1	ENST00000481739.1:c.854G>A	p.Arg285Gln	p.R285Q	ENST00000481739	NM_002957.4	285	cGg/cAg																																																																															
MED12	9968	MSKCC	GRCh37	X	70357061	70357061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			255	132	341	2	ENST00000374080.3:c.5576G>A	p.Arg1859His	p.R1859H	ENST00000374080		1859	cGt/cAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70360599	70360600	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCAGCAA			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			194	19	166	0	ENST00000374080.3:c.6174_6182dup	p.Gln2074_Gln2076dup	p.Q2074_Q2076dup	ENST00000374080		2074	-/CAGCAGCAA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029974-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			436	46	555	3	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
CD79B	974	MSKCC	GRCh37	17	62007461	62007461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029974-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	52	523	0	ENST00000392795.3:c.406G>T	p.Gly136Cys	p.G136C	ENST00000392795	NM_001039933.1	136	Ggc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221983	1221991	+	inframe_deletion	In_Frame_Del	DEL	ATCCGGCAG	ATCCGGCAG	-			P-0029974-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	43	646	0	ENST00000326873.7:c.907_915del	p.Ile303_Gln305del	p.I303_Q305del	ENST00000326873	NM_000455.4	300	ATCCGGCAG/-																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610405	10610405	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029974-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			515	54	764	0	ENST00000171111.5:c.305C>A	p.Ser102Ter	p.S102*	ENST00000171111	NM_203500.1	102	tCa/tAa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117630084	117630084	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029974-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	21	353	0	ENST00000368508.3:c.6442G>T	p.Gly2148Ter	p.G2148*	ENST00000368508	NM_002944.2	2148	Gga/Tga																																																																															
MET	4233	MSKCC	GRCh37	7	116398675	116398675	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0029974-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			257	14	370	1	ENST00000397752.3:c.2264+1G>T		p.X755_splice	ENST00000397752	NM_000245.2	755																																																																																
AMER1	139285	MSKCC	GRCh37	X	63411762	63411762	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029974-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			285	50	373	0	ENST00000330258.3:c.1405G>T	p.Glu469Ter	p.E469*	ENST00000330258	NM_152424.3	469	Gaa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0030146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	163	618	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	166	870	0	ENST00000269305.4:c.403delT	p.Cys135AlafsTer35	p.C135Afs*35	ENST00000269305	NM_001126112.2	135	Tgc/gc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95595946	95595946	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0030146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	41	528	0	ENST00000343455.3:c.597T>A	p.Cys199Ter	p.C199*	ENST00000343455	NM_177438.2	199	tgT/tgA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952048	178952048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	91	410	1	ENST00000263967.3:c.3103G>A	p.Ala1035Thr	p.A1035T	ENST00000263967	NM_006218.2	1035	Gct/Act																																																																															
CDH1	999	MSKCC	GRCh37	16	68772219	68772225	+	protein_altering_variant	In_Frame_Del	DEL	AGGAGCC	AGGAGCC	G			P-0030146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	93	676	0	ENST00000261769.5:c.68_74delinsG	p.Gln23_Pro25delinsArg	p.Q23_P25delinsR	ENST00000261769	NM_004360.3	23	cAGGAGCCg/cGg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	290	656	1	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	146	559	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0030230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	94	359	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0030230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	41	196	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	151	543	2	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965472	68965472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200682883		P-0030230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	358	757	0	ENST00000288368.4:c.1084C>T	p.Arg362Trp	p.R362W	ENST00000288368	NM_024870.2	362	Cgg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0030231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	168	432	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0030231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	180	387	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	89	243	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs757274881		P-0030231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	429	696	0	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0030231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	157	305	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593505	48593505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	36	240	0	ENST00000342988.3:c.1256G>T	p.Gly419Val	p.G419V	ENST00000342988	NM_005359.5	419	gGg/gTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76855029	76855029	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	8	177	1	ENST00000373344.5:c.5807A>G	p.Lys1936Arg	p.K1936R	ENST00000373344	NM_000489.3	1936	aAg/aGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	37	298	0	ENST00000342988.3:c.1157G>C	p.Gly386Ala	p.G386A	ENST00000342988	NM_005359.5	386	gGt/gCt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850813	63850813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	43	401	0	ENST00000279873.7:c.1591G>A	p.Glu531Lys	p.E531K	ENST00000279873	NM_032199.2	531	Gag/Aag																																																																															
NF1	4763	MSKCC	GRCh37	17	29686031	29686043	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGGTAAGAAAAT	AAGGTAAGAAAAT	-			P-0030231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	26	232	0	ENST00000358273.4:c.8159_8160+11del		p.X2720_splice	ENST00000358273	NM_001042492.2	2720																																																																																
RECQL4	9401	MSKCC	GRCh37	8	145742552	145742552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	153	515	0	ENST00000428558.2:c.236G>A	p.Gly79Glu	p.G79E	ENST00000428558	NM_004260.3	79	gGg/gAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0030234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	26	261	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027417	48027417	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	54	351	0	ENST00000234420.5:c.2295C>A	p.Cys765Ter	p.C765*	ENST00000234420	NM_000179.2	765	tgC/tgA																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943727	71943727	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TAA			P-0030234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	189	671	0	ENST00000298229.2:c.1770delinsTAA	p.Asn591LysfsTer31	p.N591Kfs*31	ENST00000298229	NM_001567.3	590	ctC/ctTAA																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	175	250	1	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763251	59763251	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	176	607	0	ENST00000259008.2:c.2851del	p.Ile951LeufsTer34	p.I951Lfs*34	ENST00000259008	NM_032043.2	951	Att/tt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790026	40790026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	65	461	0	ENST00000373198.4:c.2705G>A	p.Arg902Lys	p.R902K	ENST00000373198	NM_133170.3	902	aGa/aAa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	140	614	0	ENST00000347630.2:c.397T>C	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	Ttc/Ctc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163710	47163711	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	40	512	0	ENST00000409792.3:c.2415dup	p.Asn806Ter	p.N806*	ENST00000409792	NM_014159.6	805	-/T																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151835896	151835897	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0030288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	133	435	0	ENST00000262189.6:c.14627_14628delinsAA	p.Ile4876Lys	p.I4876K	ENST00000262189	NM_170606.2	4876	aTC/aAA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	254	460	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023090	27023090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	37	70	0	ENST00000324856.7:c.197del	p.Pro66ArgfsTer35	p.P66Rfs*35	ENST00000324856	NM_006015.4	66	Ccg/cg																																																																															
MPL	4352	MSKCC	GRCh37	1	43818427	43818427	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	165	552	0	ENST00000372470.3:c.1892A>G	p.Tyr631Cys	p.Y631C	ENST00000372470	NM_005373.2	631	tAt/tGt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953893	32953896	+	frameshift_variant	Frame_Shift_Del	DEL	TGAG	TGAG	-			P-0030289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	91	369	0	ENST00000380152.3:c.8961_8964del	p.Ser2988PhefsTer12	p.S2988Ffs*12	ENST00000380152		2987	cTGAGt/ct																																																																															
TSC2	7249	MSKCC	GRCh37	16	2130282	2130285	+	frameshift_variant	Frame_Shift_Del	DEL	GGCA	GGCA	TT			P-0030289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	166	548	1	ENST00000219476.3:c.3514_3517delinsTT	p.Gly1172PhefsTer61	p.G1172Ffs*61	ENST00000219476	NM_000548.3	1172	GGCAcc/TTcc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41256250	41256278	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CTTTTTTGCAAAATTATAGCTGTTTGCAT	CTTTTTTGCAAAATTATAGCTGTTTGCAT	-			P-0030289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	82	310	0	ENST00000357654.3:c.302_330del	p.Tyr101Ter	p.Y101*	ENST00000357654	NM_007294.3	101	tATGCAAACAGCTATAATTTTGCAAAAAAG/t																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591885	48591885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	134	448	0	ENST00000342988.3:c.1048G>T	p.Val350Phe	p.V350F	ENST00000342988	NM_005359.5	350	Gtt/Ttt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589594	67589618	+	protein_altering_variant	In_Frame_Del	DEL	AACACTCAGTTTCAAGAAAAAAGTC	AACACTCAGTTTCAAGAAAAAAGTC	GATA			P-0030289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	75	410	1	ENST00000274335.5:c.1357_1381delinsGATA	p.Asn453_Ser460delinsAsp	p.N453_S460delinsD	ENST00000274335		453	AACACTCAGTTTCAAGAAAAAAGTCga/GATAga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332825	152332825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	255	417	0	ENST00000206249.3:c.1132del	p.Leu378PhefsTer2	p.L378Ffs*2	ENST00000206249	NM_000125.3	377	caC/ca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853342	151853342	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	139	396	0	ENST00000262189.6:c.11760del	p.Phe3920LeufsTer14	p.F3920Lfs*14	ENST00000262189	NM_170606.2	3920	ttT/tt																																																																															
XIAP	331	MSKCC	GRCh37	X	123034448	123034448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	132	467	0	ENST00000355640.3:c.1205G>A	p.Ser402Asn	p.S402N	ENST00000355640		402	aGc/aAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0030300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	23	453	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0030300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	23	381	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577543	7577543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	59	597	0	ENST00000269305.4:c.738G>A	p.Met246Ile	p.M246I	ENST00000269305	NM_001126112.2	246	atG/atA																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086157	16086157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	50	592	1	ENST00000281043.3:c.1333G>A	p.Glu445Lys	p.E445K	ENST00000281043	NM_005378.4	445	Gaa/Aaa																																																																															
SETD8	387893	MSKCC	GRCh37	12	123874011	123874013	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs780061449		P-0030300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	12	35	0	ENST00000330479.4:c.62_64del	p.Ala21del	p.A21del	ENST00000330479	NM_020382.3	14	gaGGCg/gag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398255	25398255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	123	576	0	ENST00000256078.4:c.64C>A	p.Gln22Lys	p.Q22K	ENST00000256078	NM_033360.2	22	Cag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431109	49431109	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	139	604	2	ENST00000301067.7:c.10030G>T	p.Ala3344Ser	p.A3344S	ENST00000301067	NM_003482.3	3344	Gct/Tct																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112569	115112569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	96	646	0	ENST00000257566.3:c.1171G>A	p.Asp391Asn	p.D391N	ENST00000257566	NM_016569.3	391	Gac/Aac																																																																															
MSI1	4440	MSKCC	GRCh37	12	120791115	120791116	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0030323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	143	619	1	ENST00000257552.2:c.719_720delinsAA	p.Thr240Lys	p.T240K	ENST00000257552	NM_002442.3	240	aCC/aAA																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0030323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	119	598	0	ENST00000269305.4:c.920-1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
HOXB13	10481	MSKCC	GRCh37	17	46805789	46805789	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	72	596	1	ENST00000290295.7:c.167C>A	p.Ser56Ter	p.S56*	ENST00000290295	NM_006361.5	56	tCg/tAg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210638	2210638	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	65	590	0	ENST00000398665.3:c.1135G>T	p.Glu379Ter	p.E379*	ENST00000398665	NM_032482.2	379	Gag/Tag																																																																															
BBC3	27113	MSKCC	GRCh37	19	47729872	47729872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	153	426	0	ENST00000449228.1:c.517G>A	p.Gly173Ser	p.G173S	ENST00000449228	NM_001127240.2	173	Ggc/Agc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702390	47702390	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	46	340	0	ENST00000233146.2:c.1986G>T	p.Gln662His	p.Q662H	ENST00000233146	NM_000251.2	662	caG/caT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566778	212566778	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	56	391	0	ENST00000342788.4:c.1403A>G	p.Tyr468Cys	p.Y468C	ENST00000342788	NM_005235.2	468	tAt/tGt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944516	40944516	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	86	577	0	ENST00000373198.4:c.1986C>G	p.His662Gln	p.H662Q	ENST00000373198	NM_133170.3	662	caC/caG																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539051	187539051	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	50	613	0	ENST00000441802.2:c.8689C>T	p.Gln2897Ter	p.Q2897*	ENST00000441802	NM_005245.3	2897	Cag/Tag																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729475	41729475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	96	614	0	ENST00000242208.4:c.1054G>A	p.Gly352Ser	p.G352S	ENST00000242208	NM_002192.2	352	Ggt/Agt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371820	55371820	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	18	74	0	ENST00000297316.4:c.510G>T	p.Glu170Asp	p.E170D	ENST00000297316	NM_022454.3	170	gaG/gaT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404653	8404653	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	24	308	0	ENST00000356435.5:c.4094A>T	p.Asp1365Val	p.D1365V	ENST00000356435		1365	gAc/gTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521534	8521534	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	82	523	0	ENST00000356435.5:c.704del	p.Pro235HisfsTer33	p.P235Hfs*33	ENST00000356435		235	cCa/ca																																																																															
ATRX	546	MSKCC	GRCh37	X	76875919	76875919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	119	256	0	ENST00000373344.5:c.5216G>T	p.Arg1739Leu	p.R1739L	ENST00000373344	NM_000489.3	1739	cGa/cTa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0030327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	34	594	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0030332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	46	354	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56174867	56174868	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0030332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	45	401	0	ENST00000399503.3:c.2026_2027del	p.Leu676SerfsTer20	p.L676Sfs*20	ENST00000399503	NM_005921.1	676	CTt/t																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0030338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	127	815	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63537656	63537656	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201387209		P-0030338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	122	529	0	ENST00000307078.5:c.976C>T	p.Arg326Cys	p.R326C	ENST00000307078	NM_004655.3	326	Cgt/Tgt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280028	66280028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	70	313	0	ENST00000273854.3:c.1661G>A	p.Arg554Lys	p.R554K	ENST00000273854	NM_004439.5	554	aGa/aAa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602763	10602763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	176	845	1	ENST00000171111.5:c.815G>A	p.Arg272His	p.R272H	ENST00000171111	NM_203500.1	272	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229256	36229256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	154	728	0	ENST00000222270.7:c.7946G>A	p.Arg2649His	p.R2649H	ENST00000222270	NM_014727.1	2649	cGc/cAc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741897	17741897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	18	169	0	ENST00000250003.3:c.568G>A	p.Gly190Ser	p.G190S	ENST00000250003	NM_002478.4	190	Ggc/Agc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969796	81969796	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	100	629	0	ENST00000359376.3:c.2865C>G	p.Ile955Met	p.I955M	ENST00000359376	NM_002661.3	955	atC/atG																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206648218	206648218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	185	307	0	ENST00000367120.3:c.239G>A	p.Arg80Gln	p.R80Q	ENST00000367120	NM_014002.3	80	cGg/cAg																																																																															
HRAS	3265	MSKCC	GRCh37	11	534286	534286	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs104894228		P-0030362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	559	435	0	ENST00000311189.7:c.37G>C	p.Gly13Arg	p.G13R	ENST00000311189		13	Ggt/Cgt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138199	64138199	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0030362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	353	528	0	ENST00000334205.4:c.2121+1G>T		p.X707_splice	ENST00000334205	NM_003942.2	707																																																																																
SLX4	84464	MSKCC	GRCh37	16	3639821	3639821	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	316	540	0	ENST00000294008.3:c.3818C>G	p.Thr1273Ser	p.T1273S	ENST00000294008	NM_032444.2	1273	aCc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0030362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	678	436	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2227048	2227048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	373	456	1	ENST00000398665.3:c.4528G>T	p.Val1510Leu	p.V1510L	ENST00000398665	NM_032482.2	1510	Gtg/Ttg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292489	15292489	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	438	554	0	ENST00000263388.2:c.2690G>T	p.Gly897Val	p.G897V	ENST00000263388	NM_000435.2	897	gGc/gTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188405	32188406	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0030362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	251	364	1	ENST00000375023.3:c.935_936delinsTT	p.Ser312Phe	p.S312F	ENST00000375023	NM_004557.3	312	tCC/tTT																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287157	33287157	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0030362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	206	325	0	ENST00000374542.5:c.1940G>T	p.Ser647Ile	p.S647I	ENST00000374542	NM_001141970.1	647	aGc/aTc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117641078	117641079	+	missense_variant	Missense_Mutation	DNP	CT	CT	AG			P-0030362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	214	413	0	ENST00000368508.3:c.5892_5893inv	p.Val1965Leu	p.V1965L	ENST00000368508	NM_002944.2	1964	gcAGtg/gcCTtg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376701	8376701	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	236	361	0	ENST00000356435.5:c.4412G>T	p.Ser1471Ile	p.S1471I	ENST00000356435		1471	aGc/aTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	188	302	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ATM	472	MSKCC	GRCh37	11	108181032	108181032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	152	208	0	ENST00000278616.4:c.5908C>T	p.Gln1970Ter	p.Q1970*	ENST00000278616	NM_000051.3	1970	Caa/Taa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748914	43748914	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	384	565	0	ENST00000382044.4:c.1892A>C	p.Gln631Pro	p.Q631P	ENST00000382044	NM_001141980.1	631	cAg/cCg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50921188	50921188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	183	505	0	ENST00000440232.2:c.3308G>A	p.Gly1103Glu	p.G1103E	ENST00000440232	NM_002691.3	1103	gGa/gAa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715621	30715621	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	126	192	0	ENST00000359013.4:c.1354C>A	p.Pro452Thr	p.P452T	ENST00000359013	NM_001024847.2	452	Cca/Aca																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72076782	72076782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	60	404	0	ENST00000357731.5:c.715C>T	p.Arg239Cys	p.R239C	ENST00000357731	NM_173808.2	239	Cgc/Tgc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	88	395	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	75	335	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	47	325	0	ENST00000324856.7:c.3977dupC	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	38	323	1	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	35	175	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455090	50455090	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	63	313	1	ENST00000331340.3:c.637C>T	p.Arg213Ter	p.R213*	ENST00000331340	NM_006060.4	213	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710645	114710645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	76	343	1	ENST00000543371.1:c.130G>T	p.Val44Phe	p.V44F	ENST00000543371	NM_001198531.1	44	Gtc/Ttc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737419	145737419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	88	497	0	ENST00000428558.2:c.3268G>A	p.Glu1090Lys	p.E1090K	ENST00000428558	NM_004260.3	1090	Gag/Aag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120169	70120169	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	95	277	1	ENST00000245479.2:c.1171C>T	p.Gln391Ter	p.Q391*	ENST00000245479	NM_000346.3	391	Cag/Tag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30648470	30648470	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	63	357	1	ENST00000359013.4:c.94+1G>A		p.X32_splice	ENST00000359013	NM_001024847.2	32																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27088760	27088760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	67	475	0	ENST00000324856.7:c.2369del	p.Gln790ArgfsTer43	p.Q790Rfs*43	ENST00000324856	NM_006015.4	790	cAg/cg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983123	201983123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	97	477	0	ENST00000359651.3:c.972G>A	p.Met324Ile	p.M324I	ENST00000359651		324	atG/atA																																																																															
AXL	558	MSKCC	GRCh37	19	41727844	41727844	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	113	580	0	ENST00000301178.4:c.469A>G	p.Asn157Asp	p.N157D	ENST00000301178	NM_021913.4	157	Aac/Gac																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372478	55372478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	109	672	0	ENST00000297316.4:c.1168G>A	p.Asp390Asn	p.D390N	ENST00000297316	NM_022454.3	390	Gac/Aac																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258894	16258894	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	329	611	8	ENST00000375759.3:c.6164delC	p.Pro2055LeufsTer9	p.P2055Lfs*9	ENST00000375759	NM_015001.2	2053	aaC/aa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262680	16262680	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	151	303	3	ENST00000375759.3:c.9950delC	p.Pro3317ArgfsTer83	p.P3317Rfs*83	ENST00000375759	NM_015001.2	3315	caC/ca																																																																															
SESN2	83667	MSKCC	GRCh37	1	28607255	28607255	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs988053889		P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	60	406	0	ENST00000253063.3:c.1385C>T	p.Ala462Val	p.A462V	ENST00000253063	NM_031459.4	462	gCg/gTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	147	339	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
TET1	80312	MSKCC	GRCh37	10	70442623	70442623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	240	436	0	ENST00000373644.4:c.4945C>T	p.Arg1649Trp	p.R1649W	ENST00000373644	NM_030625.2	1649	Cgg/Tgg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	184	451	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	203	445	2	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912186	114912186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	87	442	0	ENST00000543371.1:c.1256C>T	p.Ala419Val	p.A419V	ENST00000543371	NM_001198531.1	419	gCg/gTg																																																																															
ATM	472	MSKCC	GRCh37	11	108098609	108098609	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	97	227	1	ENST00000278616.4:c.183delT	p.Phe61LeufsTer15	p.F61Lfs*15	ENST00000278616	NM_000051.3	60	gTt/gt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376527	118376528	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	182	343	0	ENST00000534358.1:c.9922_9923del	p.Ser3308CysfsTer19	p.S3308Cfs*19	ENST00000534358	NM_005933.3	3307	cAG/c																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233483	69233483	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	77	434	0	ENST00000462284.1:c.1348C>T	p.Arg450Ter	p.R450*	ENST00000462284	NM_002392.5	450	Cga/Tga																																																																															
RAB35	11021	MSKCC	GRCh37	12	120546245	120546245	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	262	506	0	ENST00000229340.5:c.79C>G	p.Arg27Gly	p.R27G	ENST00000229340	NM_006861.6	27	Cgt/Ggt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557569	21557569	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	248	568	1	ENST00000382592.4:c.2276G>T	p.Arg759Leu	p.R759L	ENST00000382592	NM_014572.2	759	cGg/cTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435831	110435831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	161	355	1	ENST00000375856.3:c.2570G>A	p.Gly857Asp	p.G857D	ENST00000375856	NM_003749.2	857	gGc/gAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347168	347168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	245	524	0	ENST00000262320.3:c.1843G>A	p.Ala615Thr	p.A615T	ENST00000262320	NM_003502.3	615	Gcc/Acc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821875	72821875	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	29	354	0	ENST00000268489.5:c.10300del	p.Leu3434SerfsTer51	p.L3434Sfs*51	ENST00000268489	NM_006885.3	3434	Ctc/tc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828579	72828579	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	285	568	1	ENST00000268489.5:c.8002C>T	p.Arg2668Ter	p.R2668*	ENST00000268489	NM_006885.3	2668	Cga/Tga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341328	89341328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	145	320	0	ENST00000301030.4:c.7607G>A	p.Arg2536Gln	p.R2536Q	ENST00000301030	NM_001256183.1	2536	cGg/cAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346158	89346158	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	46	216	0	ENST00000301030.4:c.6792del	p.Ala2265ProfsTer72	p.A2265Pfs*72	ENST00000301030	NM_001256183.1	2264	ccC/cc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347792	89347792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	186	430	0	ENST00000301030.4:c.5158C>T	p.His1720Tyr	p.H1720Y	ENST00000301030	NM_001256183.1	1720	Cac/Tac																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89352560	89352560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	206	382	0	ENST00000301030.4:c.779C>T	p.Pro260Leu	p.P260L	ENST00000301030	NM_001256183.1	260	cCg/cTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866696	37866696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	303	579	1	ENST00000269571.5:c.863G>A	p.Arg288Gln	p.R288Q	ENST00000269571		288	cGg/cAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120313	70120313	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	351	755	0	ENST00000245479.2:c.1315C>T	p.Gln439Ter	p.Q439*	ENST00000245479	NM_000346.3	439	Cag/Tag																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78829285	78829285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	245	486	1	ENST00000306801.3:c.1336C>T	p.Arg446Trp	p.R446W	ENST00000306801	NM_020761.2	446	Cgg/Tgg																																																																															
INSR	3643	MSKCC	GRCh37	19	7174642	7174642	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	267	550	2	ENST00000302850.5:c.1075G>T	p.Gly359Ter	p.G359*	ENST00000302850	NM_000208.2	359	Gga/Tga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272337	15272337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs776990686		P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	274	697	2	ENST00000263388.2:c.6102del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2034	ccC/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212113	36212113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	202	463	0	ENST00000222270.7:c.1864C>T	p.Pro622Ser	p.P622S	ENST00000222270	NM_014727.1	622	Ccc/Tcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224216	36224216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	271	553	0	ENST00000222270.7:c.6766C>T	p.Pro2256Ser	p.P2256S	ENST00000222270	NM_014727.1	2256	Cca/Tca																																																																															
ERF	2077	MSKCC	GRCh37	19	42752843	42752844	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	301	676	0	ENST00000222329.4:c.1419_1420dup	p.Ala474GlyfsTer58	p.A474Gfs*58	ENST00000222329	NM_006494.2	474	gca/gGGca																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	297	719	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
ERF	2077	MSKCC	GRCh37	19	42753645	42753645	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	311	627	1	ENST00000222329.4:c.619C>T	p.Arg207Ter	p.R207*	ENST00000222329	NM_006494.2	207	Cga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248518	212248518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	206	408	1	ENST00000342788.4:c.3749G>A	p.Arg1250Gln	p.R1250Q	ENST00000342788	NM_005235.2	1250	cGg/cAg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661663	227661664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761880048		P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	140	450	6	ENST00000305123.5:c.1791dup	p.His598AlafsTer13	p.H598Afs*13	ENST00000305123	NM_005544.2	597	-/G																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651304	52651304	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	212	360	0	ENST00000394830.3:c.1792A>G	p.Arg598Gly	p.R598G	ENST00000394830	NM_018313.4	598	Agg/Ggg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803172	1803172	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775241791		P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	130	659	2	ENST00000260795.2:c.524G>A	p.Arg175His	p.R175H	ENST00000260795		175	cGc/cAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535436	66535436	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	178	362	0	ENST00000273854.3:c.25G>C	p.Ala9Pro	p.A9P	ENST00000273854	NM_004439.5	9	Gcg/Ccg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541886	187541886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	234	467	0	ENST00000441802.2:c.5854G>A	p.Val1952Ile	p.V1952I	ENST00000441802	NM_005245.3	1952	Gtt/Att																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56152429	56152429	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	76	173	0	ENST00000399503.3:c.485G>A	p.Arg162His	p.R162H	ENST00000399503	NM_005921.1	162	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	45	305	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520087	106520087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	109	242	0	ENST00000359195.3:c.2515C>T	p.Arg839Cys	p.R839C	ENST00000359195	NM_002649.2	839	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836322	151836322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	193	387	1	ENST00000262189.6:c.14483G>A	p.Arg4828His	p.R4828H	ENST00000262189	NM_170606.2	4828	cGc/cAc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117861247	117861247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	40	364	0	ENST00000297338.2:c.1642G>A	p.Asp548Asn	p.D548N	ENST00000297338	NM_006265.2	548	Gat/Aat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970951	21970951	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	267	587	0	ENST00000304494.5:c.407del	p.Gly136AlafsTer10	p.G136Afs*10	ENST00000304494	NM_000077.4	136	gGc/gc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87366925	87366925	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	322	648	0	ENST00000277120.3:c.1321T>A	p.Ser441Thr	p.S441T	ENST00000277120		441	Tct/Act																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0030383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	45	135	0	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
REL	5966	MSKCC	GRCh37	2	61121593	61121593	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	143	412	0	ENST00000295025.8:c.215A>T	p.Tyr72Phe	p.Y72F	ENST00000295025	NM_002908.2	72	tAt/tTt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111510	8111511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	99	557	0	ENST00000346208.3:c.998dup	p.Asn333LysfsTer19	p.N333Kfs*19	ENST00000346208		332	-/A																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266112	41266112	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913228		P-0030410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	12	316	0	ENST00000349496.5:c.109T>C	p.Ser37Pro	p.S37P	ENST00000349496	NM_001904.3	37	Tct/Cct																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191485	185191485	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	284	693	0	ENST00000265026.3:c.2368del	p.Leu790SerfsTer34	p.L790Sfs*34	ENST00000265026	NM_004721.4	789	tCc/tc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949983	44949996	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCAGTGGAACGG	TGGCAGTGGAACGG	-			P-0030410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	17	255	0	ENST00000377967.4:c.3753_3766del	p.Ala1252ArgfsTer34	p.A1252Rfs*34	ENST00000377967	NM_021140.2	1251	tTGGCAGTGGAACGG/t																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028657	12028657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	146	505	0	ENST00000353533.5:c.860G>A	p.Arg287His	p.R287H	ENST00000353533	NM_003010.3	287	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0030412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	333	564	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0030412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	202	414	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786204041		P-0030412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	346	619	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175788	112175788	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	185	365	0	ENST00000257430.4:c.4497delA	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1499	ggA/gg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222726	5222726	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779918003		P-0030412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	340	617	0	ENST00000357368.4:c.3077G>A	p.Arg1026His	p.R1026H	ENST00000357368	NM_002850.3	1026	cGc/cAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411777	63411777	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	242	781	0	ENST00000330258.3:c.1390G>A	p.Ala464Thr	p.A464T	ENST00000330258	NM_152424.3	464	Gcc/Acc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259244	89259244	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	131	459	0	ENST00000336596.2:c.388G>T	p.Asp130Tyr	p.D130Y	ENST00000336596	NM_005233.5	130	Gat/Tat																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877349	40877349	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	435	409	0	ENST00000373198.4:c.2347G>C	p.Val783Leu	p.V783L	ENST00000373198	NM_133170.3	783	Gtg/Ctg																																																																															
CDH1	999	MSKCC	GRCh37	16	68835596	68835596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	205	420	0	ENST00000261769.5:c.187C>T	p.Arg63Ter	p.R63*	ENST00000261769	NM_004360.3	63	Cga/Tga																																																																															
PGR	5241	MSKCC	GRCh37	11	100962594	100962594	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0030420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	197	374	0	ENST00000325455.5:c.1803C>G	p.Tyr601Ter	p.Y601*	ENST00000325455	NM_001202474.3	601	taC/taG																																																																															
CIC	23152	MSKCC	GRCh37	19	42793046	42793046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	113	455	0	ENST00000575354.2:c.938C>T	p.Ser313Phe	p.S313F	ENST00000575354	NM_015125.3	313	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	40	418	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	190	448	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0030450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	36	396	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0030450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	47	498	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	46	366	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391214	89391214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	110	320	3	ENST00000336596.2:c.1280C>T	p.Ala427Val	p.A427V	ENST00000336596	NM_005233.5	427	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	156	218	0	ENST00000257430.4:c.4067C>A	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604656	48604656	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	21	265	0	ENST00000342988.3:c.1478A>T	p.Asp493Val	p.D493V	ENST00000342988	NM_005359.5	493	gAt/gTt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911575	114911575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	210	575	0	ENST00000543371.1:c.1093A>G	p.Arg365Gly	p.R365G	ENST00000543371	NM_001198531.1	365	Aga/Gga																																																																															
ATM	472	MSKCC	GRCh37	11	108143287	108143287	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	210	411	0	ENST00000278616.4:c.3107del	p.Phe1036SerfsTer3	p.F1036Sfs*3	ENST00000278616	NM_000051.3	1036	Ttc/tc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40461409	40461409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	52	592	0	ENST00000345506.4:c.2129C>A	p.Ser710Tyr	p.S710Y	ENST00000345506	NM_003152.3	710	tCt/tAt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15297736	15297736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	118	686	0	ENST00000263388.2:c.1904G>A	p.Arg635His	p.R635H	ENST00000263388	NM_000435.2	635	cGt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210874	36210874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	310	705	1	ENST00000222270.7:c.625C>T	p.Arg209Trp	p.R209W	ENST00000222270	NM_014727.1	209	Cgg/Tgg																																																																															
AR	367	MSKCC	GRCh37	X	66765771	66765771	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	236	783	0	ENST00000374690.3:c.783A>C	p.Glu261Asp	p.E261D	ENST00000374690	NM_000044.3	261	gaA/gaC																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119809	70119817	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGACGTG	CGCGACGTG	T			P-0030450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	202	583	0	ENST00000245479.2:c.811_819delinsT	p.Arg271Ter	p.R271*	ENST00000245479	NM_000346.3	271	CGCGACGTG/T																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0030451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	184	416	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0030451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	295	658	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273045	18273045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	344	721	1	ENST00000222254.8:c.935C>T	p.Ala312Val	p.A312V	ENST00000222254	NM_005027.3	312	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	306	586	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0030452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	156	253	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2103385	2103385	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	599	814	0	ENST00000219476.3:c.268C>T	p.Gln90Ter	p.Q90*	ENST00000219476	NM_000548.3	90	Cag/Tag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633501	3633501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	531	740	0	ENST00000294008.3:c.4750C>T	p.Arg1584Cys	p.R1584C	ENST00000294008	NM_032444.2	1584	Cgc/Tgc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58678134	58678134	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0030452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	175	534	0	ENST00000305921.3:c.359T>A	p.Leu120Ter	p.L120*	ENST00000305921	NM_003620.3	120	tTg/tAg																																																																															
FANCC	2176	MSKCC	GRCh37	9	98011302	98011410	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCAGTCAATACCACAAGTCCCGATTCTGGGTGGCATTCTGTCTTGGTGAAATCTGGTAGAGTCCCTGAAGTCAGAAAATAATTTCATTATTCTGGTCCACTACTTACCA	TCAGTCAATACCACAAGTCCCGATTCTGGGTGGCATTCTGTCTTGGTGAAATCTGGTAGAGTCCCTGAAGTCAGAAAATAATTTCATTATTCTGGTCCACTACTTACCA	-			P-0030452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	82	130	0	ENST00000289081.3:c.164_165+107del		p.X55_splice	ENST00000289081	NM_000136.2	55																																																																																
FAT1	2195	MSKCC	GRCh37	4	187517697	187517697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	11	127	0	ENST00000441802.2:c.12997G>T	p.Asp4333Tyr	p.D4333Y	ENST00000441802	NM_005245.3	4333	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0030455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	232	627	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0030455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	189	521	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222419	2222419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	123	445	0	ENST00000398665.3:c.3251G>A	p.Arg1084His	p.R1084H	ENST00000398665	NM_032482.2	1084	cGc/cAc																																																																															
MET	4233	MSKCC	GRCh37	7	116412031	116412031	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	57	742	0	ENST00000397752.3:c.3016A>C	p.Thr1006Pro	p.T1006P	ENST00000397752	NM_000245.2	1006	Act/Cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	51	409	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057970	27057971	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0030458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	45	341	1	ENST00000324856.7:c.1679dup	p.Tyr560Ter	p.Y560*	ENST00000324856	NM_006015.4	560	tac/tAac																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0030459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	108	436	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0030459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	75	668	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0030459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	113	402	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0030459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	94	495	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0030459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	117	399	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
AKT1	207	MSKCC	GRCh37	14	105243045	105243045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	58	711	0	ENST00000349310.3:c.238T>C	p.Trp80Arg	p.W80R	ENST00000349310	NM_001014432.1	80	Tgg/Cgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767326		P-0030459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	61	274	1	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371801	55371801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	53	89	1	ENST00000297316.4:c.491C>T	p.Ala164Val	p.A164V	ENST00000297316	NM_022454.3	164	gCg/gTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793382	18793382	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs77070108		P-0030459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	84	408	0	ENST00000266497.5:c.4079C>T	p.Ala1360Val	p.A1360V	ENST00000266497		1360	gCg/gTg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30322718	30322718	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	146	530	0	ENST00000322652.5:c.1731A>T	p.Gln577His	p.Q577H	ENST00000322652	NM_015355.2	577	caA/caT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94128980	94128980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	77	350	1	ENST00000369303.4:c.80C>T	p.Ala27Val	p.A27V	ENST00000369303	NM_004440.3	27	gCg/gTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115888	8115889	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	83	427	0	ENST00000346208.3:c.1236dupC	p.Ser413GlnfsTer94	p.S413Qfs*94	ENST00000346208		412	tcc/tCcc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426712	121426712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	89	557	2	ENST00000257555.6:c.403G>A	p.Asp135Asn	p.D135N	ENST00000257555		135	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577068	7577071	+	frameshift_variant	Frame_Shift_Del	DEL	GCGG	GCGG	-			P-0030342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	163	561	0	ENST00000269305.4:c.867_870del	p.Lys292GlyfsTer52	p.K292Gfs*52	ENST00000269305	NM_001126112.2	289	ctCCGC/ct																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	22	495	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155411	185155411	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140970208		P-0030251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	33	306	1	ENST00000265026.3:c.652G>A	p.Ala218Thr	p.A218T	ENST00000265026	NM_004721.4	218	Gca/Aca																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097761	8097761	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	129	517	1	ENST00000346208.3:c.143A>T	p.Asp48Val	p.D48V	ENST00000346208		48	gAt/gTt																																																																															
AR	367	MSKCC	GRCh37	X	66937404	66937404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	66	552	1	ENST00000374690.3:c.2258G>A	p.Arg753Gln	p.R753Q	ENST00000374690	NM_000044.3	753	cGa/cAa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434986	110434986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	204	472	0	ENST00000375856.3:c.3415G>T	p.Asp1139Tyr	p.D1139Y	ENST00000375856	NM_003749.2	1139	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0029988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	406	618	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4110615	4110615	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	178	507	0	ENST00000262948.5:c.342G>C	p.Gln114His	p.Q114H	ENST00000262948	NM_030662.3	114	caG/caC																																																																															
CARM1	10498	MSKCC	GRCh37	19	11018745	11018745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	202	579	0	ENST00000327064.4:c.377C>T	p.Thr126Ile	p.T126I	ENST00000327064	NM_199141.1	126	aCc/aTc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129227	152129227	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0029988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	140	560	2	ENST00000206249.3:c.180C>G	p.Tyr60Ter	p.Y60*	ENST00000206249	NM_000125.3	60	taC/taG																																																																															
HGF	3082	MSKCC	GRCh37	7	81332030	81332030	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	167	346	0	ENST00000222390.5:c.2054G>C	p.Arg685Thr	p.R685T	ENST00000222390	NM_000601.4	685	aGa/aCa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0029990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	126	417	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0029990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	258	520	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911534	101911534	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111426349		P-0029990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	154	384	0	ENST00000374994.4:c.1459C>T	p.Arg487Trp	p.R487W	ENST00000374994	NM_004612.2	487	Cgg/Tgg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50810101	50810101	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	52	401	1	ENST00000398568.2:c.925C>T	p.Gln309Ter	p.Q309*	ENST00000398568	NM_001042412.1	309	Cag/Tag																																																																															
INHA	3623	MSKCC	GRCh37	2	220437265	220437265	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1226	170	654	3	ENST00000243786.2:c.169C>T	p.Arg57Trp	p.R57W	ENST00000243786	NM_002191.3	57	Cgg/Tgg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117665315	117665315	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	36	338	0	ENST00000368508.3:c.4432del	p.Tyr1478MetfsTer26	p.Y1478Mfs*26	ENST00000368508	NM_002944.2	1478	Tat/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0030125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	30	450	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0030129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	230	353	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	174	318	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0030129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	106	428	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	114	336	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636820	8636820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	248	341	0	ENST00000356435.5:c.89C>T	p.Pro30Leu	p.P30L	ENST00000356435		30	cCc/cTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101118	41101118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751886972		P-0030129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	541	450	0	ENST00000373198.4:c.1238C>T	p.Ala413Val	p.A413V	ENST00000373198	NM_133170.3	413	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577115	7577128	+	frameshift_variant	Frame_Shift_Del	DEL	AAACACGCACCTCA	AAACACGCACCTCA	-			P-0030129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	332	654	0	ENST00000269305.4:c.810_823del	p.Phe270LeufsTer31	p.F270Lfs*31	ENST00000269305	NM_001126112.2	270	ttTGAGGTGCGTGTTTgt/ttgt																																																																															
NF1	4763	MSKCC	GRCh37	17	29556208	29556208	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	58	219	0	ENST00000358273.4:c.2575G>T	p.Gly859Cys	p.G859C	ENST00000358273	NM_001042492.2	859	Ggc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41818322	41818322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	22	28	0	ENST00000373198.4:c.52C>T	p.Pro18Ser	p.P18S	ENST00000373198	NM_133170.3	18	Ccg/Tcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0030131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	238	377	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0030131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	140	290	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
AR	367	MSKCC	GRCh37	X	66905872	66905872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	124	349	0	ENST00000374690.3:c.1789G>A	p.Ala597Thr	p.A597T	ENST00000374690	NM_000044.3	597	Gcc/Acc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411411	63411411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	221	590	1	ENST00000330258.3:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000330258	NM_152424.3	586	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097629	27097629	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	211	467	0	ENST00000324856.7:c.3218G>A	p.Trp1073Ter	p.W1073*	ENST00000324856	NM_006015.4	1073	tGg/tAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119945	70119946	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	GTA			P-0030131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	292	311	0	ENST00000245479.2:c.948_949insTAG	p.Thr316_Gly317insTer	p.T316_G317ins*	ENST00000245479	NM_000346.3	316	acg/acGTAg																																																																															
APC	324	MSKCC	GRCh37	5	112173560	112173560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	131	295	0	ENST00000257430.4:c.2269C>T	p.Gln757Ter	p.Q757*	ENST00000257430	NM_000038.5	757	Caa/Taa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679900	30679900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	145	388	0	ENST00000376406.3:c.1819G>A	p.Gly607Arg	p.G607R	ENST00000376406	NM_014641.2	607	Ggg/Agg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907104	101907105	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TACT			P-0030131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	122	430	0	ENST00000374994.4:c.1064_1065insTACT	p.Val356ThrfsTer5	p.V356Tfs*5	ENST00000374994	NM_004612.2	355	gca/gcTACTa																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733356	85733356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	48	530	1	ENST00000370580.1:c.656G>T	p.Ser219Ile	p.S219I	ENST00000370580	NM_003921.4	219	aGt/aTt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514934	103514934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	119	320	0	ENST00000355739.4:c.1435G>A	p.Val479Ile	p.V479I	ENST00000355739	NM_000123.3	479	Gtt/Att																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0030134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	463	573	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220596	1220602	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCGGA	CGGCGGA	-			P-0030134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	429	642	0	ENST00000326873.7:c.616_622del	p.Ala206ThrfsTer79	p.A206Tfs*79	ENST00000326873	NM_000455.4	205	gCGGCGGAc/gc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149457743	149457743	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	219	602	0	ENST00000286301.3:c.661C>T	p.Gln221Ter	p.Q221*	ENST00000286301	NM_005211.3	221	Cag/Tag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021810	69021810	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	134	562	0	ENST00000288368.4:c.3098T>G	p.Leu1033Arg	p.L1033R	ENST00000288368	NM_024870.2	1033	cTt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	395	612	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173656	112173656	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	220	397	1	ENST00000257430.4:c.2365C>T	p.Gln789Ter	p.Q789*	ENST00000257430	NM_000038.5	789	Cag/Tag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18974314	18974314	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	328	635	0	ENST00000262803.5:c.2668A>G	p.Asn890Asp	p.N890D	ENST00000262803	NM_002911.3	890	Aac/Gac																																																																															
MITF	4286	MSKCC	GRCh37	3	70014047	70014047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	136	473	1	ENST00000352241.4:c.1211C>T	p.Thr404Met	p.T404M	ENST00000352241	NM_198159.2	404	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0030142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	263	420	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520017		P-0030142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	51	757	0	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602443	10602443	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	50	692	0	ENST00000171111.5:c.1135G>T	p.Gly379Cys	p.G379C	ENST00000171111	NM_203500.1	379	Ggc/Tgc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115844	8115844	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	87	576	1	ENST00000346208.3:c.1190C>G	p.Ser397Cys	p.S397C	ENST00000346208		397	tCc/tGc																																																																															
TET1	80312	MSKCC	GRCh37	10	70333017	70333017	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	57	735	1	ENST00000373644.4:c.922G>T	p.Asp308Tyr	p.D308Y	ENST00000373644	NM_030625.2	308	Gac/Tac																																																																															
ATM	472	MSKCC	GRCh37	11	108202759	108202759	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	37	370	0	ENST00000278616.4:c.7783del	p.Asp2595MetfsTer11	p.D2595Mfs*11	ENST00000278616	NM_000051.3	2595	Gat/at																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719128	190719128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	33	283	0	ENST00000441310.2:c.1130G>A	p.Gly377Glu	p.G377E	ENST00000441310	NM_000534.4	377	gGa/gAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713325	40713325	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	31	547	0	ENST00000373198.4:c.4190G>C	p.Cys1397Ser	p.C1397S	ENST00000373198	NM_133170.3	1397	tGc/tCc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125413	47125413	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	27	385	0	ENST00000409792.3:c.5857G>T	p.Glu1953Ter	p.E1953*	ENST00000409792	NM_014159.6	1953	Gaa/Taa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873057	134873057	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	36	594	0	ENST00000398015.3:c.1361G>A	p.Trp454Ter	p.W454*	ENST00000398015	NM_004441.4	454	tGg/tAg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435833	149435833	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	63	678	0	ENST00000286301.3:c.2391C>A	p.Phe797Leu	p.F797L	ENST00000286301	NM_005211.3	797	ttC/ttA																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979286	93979286	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	40	404	0	ENST00000369303.4:c.1542G>T	p.Gln514His	p.Q514H	ENST00000369303	NM_004440.3	514	caG/caT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974759	21974759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	22	287	0	ENST00000304494.5:c.68G>A	p.Gly23Asp	p.G23D	ENST00000304494	NM_000077.4	23	gGt/gAt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570229	87570229	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	18	336	0	ENST00000277120.3:c.1969G>C	p.Glu657Gln	p.E657Q	ENST00000277120		657	Gag/Cag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209530	98209530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	78	572	0	ENST00000331920.6:c.4008G>T	p.Arg1336Ser	p.R1336S	ENST00000331920	NM_000264.3	1336	agG/agT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410597	63410598	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0030142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	53	343	2	ENST00000330258.3:c.2569_2570delinsTT	p.Arg857Leu	p.R857L	ENST00000330258	NM_152424.3	857	CGa/TTa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526719	31526719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	115	692	1	ENST00000344624.3:c.321G>A	p.Met107Ile	p.M107I	ENST00000344624		107	atG/atA																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138591	11138591	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	102	525	3	ENST00000344626.4:c.3347T>C	p.Phe1116Ser	p.F1116S	ENST00000344626	NM_003072.3	1116	tTt/tCt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515096	103515096	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	36	303	4	ENST00000355739.4:c.1597del	p.Val533CysfsTer57	p.V533Cfs*57	ENST00000355739	NM_000123.3	533	Gtg/tg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061250	38061250	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	548	548	7	ENST00000250448.2:c.739C>A	p.His247Asn	p.H247N	ENST00000250448	NM_004496.3	247	Cac/Aac																																																																															
INSR	3643	MSKCC	GRCh37	19	7163209	7163209	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0030143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	39	358	0	ENST00000302850.5:c.1863C>A	p.Asn621Lys	p.N621K	ENST00000302850	NM_000208.2	621	aaC/aaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	82	453	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0030144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	91	550	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0030144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	82	578	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057736	27057736	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	112	819	3	ENST00000324856.7:c.1444C>T	p.Gln482Ter	p.Q482*	ENST00000324856	NM_006015.4	482	Cag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120941	115120941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	70	531	0	ENST00000257566.3:c.65C>T	p.Pro22Leu	p.P22L	ENST00000257566	NM_016569.3	22	cCt/cTt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482870	67482870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	82	326	0	ENST00000327367.4:c.1274C>A	p.Ser425Tyr	p.S425Y	ENST00000327367	NM_005902.3	425	tCt/tAt																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40375496	40375496	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	96	577	0	ENST00000293328.3:c.454C>T	p.Arg152Ter	p.R152*	ENST00000293328	NM_012448.3	152	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604743	48604744	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	20	429	0	ENST00000342988.3:c.1567dup	p.Cys523LeufsTer4	p.C523Lfs*4	ENST00000342988	NM_005359.5	522	cct/ccTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023534	27023535	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCTA			P-0030145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	252	447	0	ENST00000324856.7:c.642_645dup	p.Tyr216LeufsTer185	p.Y216Lfs*185	ENST00000324856	NM_006015.4	214	tcc/tCCTAcc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55214312	55214332	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCGTGCGGTTCAGCAACAA	CGCCGTGCGGTTCAGCAACAA	G			P-0030145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	33	456	0	ENST00000275493.2:c.438_458delinsG	p.Ala147ProfsTer18	p.A147Pfs*18	ENST00000275493	NM_005228.3	146	ggCGCCGTGCGGTTCAGCAACAAc/ggGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	281	514	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0030147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	231	601	7	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0030147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	74	207	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0030147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	35	207	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015010	37015010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	144	358	0	ENST00000358127.4:c.394G>A	p.Val132Ile	p.V132I	ENST00000358127	NM_001280556.1	132	Gtc/Atc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4117625	4117625	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0030147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	110	529	0	ENST00000262948.5:c.95C>A	p.Ala32Glu	p.A32E	ENST00000262948	NM_030662.3	32	gCa/gAa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660252	227660252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	49	556	0	ENST00000305123.5:c.3203G>T	p.Gly1068Val	p.G1068V	ENST00000305123	NM_005544.2	1068	gGc/gTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0030150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	134	324	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99482442	99482442	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	105	373	0	ENST00000268035.6:c.3310C>G	p.Leu1104Val	p.L1104V	ENST00000268035	NM_000875.3	1104	Cta/Gta																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579356	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0030150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	238	671	0	ENST00000269305.4:c.331_332del	p.Leu111GlyfsTer37	p.L111Gfs*37	ENST00000269305	NM_001126112.2	111	CTg/g																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10260152	10260152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	179	525	1	ENST00000340748.4:c.2515C>T	p.Pro839Ser	p.P839S	ENST00000340748		839	Ccc/Tcc																																																																															
APC	324	MSKCC	GRCh37	5	112175173	112175173	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	153	238	0	ENST00000257430.4:c.3883del	p.Glu1295LysfsTer10	p.E1295Kfs*10	ENST00000257430	NM_000038.5	1294	caG/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	31	546	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845416	156845416	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	49	704	1	ENST00000524377.1:c.1459C>T	p.Gln487Ter	p.Q487*	ENST00000524377	NM_002529.3	487	Caa/Taa																																																																															
HGF	3082	MSKCC	GRCh37	7	81350107	81350107	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	71	379	0	ENST00000222390.5:c.1225G>T	p.Gly409Ter	p.G409*	ENST00000222390	NM_000601.4	409	Gga/Tga																																																																															
RB1	5925	MSKCC	GRCh37	13	48934218	48934222	+	frameshift_variant	Frame_Shift_Del	DEL	TATTT	TATTT	-			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	14	516	0	ENST00000267163.4:c.677_681delTTATT	p.Phe226Ter	p.F226*	ENST00000267163	NM_000321.2	225	TATTTt/t																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176055009	176055009	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	88	482	0	ENST00000367669.3:c.1044G>T	p.Trp348Cys	p.W348C	ENST00000367669	NM_022457.5	348	tgG/tgT																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71945324	71945324	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	44	635	0	ENST00000298229.2:c.2213-1G>T		p.X738_splice	ENST00000298229	NM_001567.3	738																																																																																
RB1	5925	MSKCC	GRCh37	13	48954309	48954329	+	inframe_deletion	In_Frame_Del	DEL	TGAATGACAACATTTTTCATA	TGAATGACAACATTTTTCATA	-			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	50	312	0	ENST00000267163.4:c.1432_1452del	p.Asn478_Met484del	p.N478_M484del	ENST00000267163	NM_000321.2	477	cTGAATGACAACATTTTTCATAtg/ctg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3644462	3644462	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	25	670	0	ENST00000294008.3:c.2152A>G	p.Ile718Val	p.I718V	ENST00000294008	NM_032444.2	718	Atc/Gtc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4097336	4097336	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	44	520	0	ENST00000262948.5:c.925G>T	p.Gly309Trp	p.G309W	ENST00000262948	NM_030662.3	309	Ggg/Tgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187934	32187934	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	21	618	0	ENST00000375023.3:c.1287C>A	p.Cys429Ter	p.C429*	ENST00000375023	NM_004557.3	429	tgC/tgA																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821212	32821212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	36	727	0	ENST00000354258.4:c.382C>T	p.Leu128Phe	p.L128F	ENST00000354258	NM_000593.5	128	Ctc/Ttc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528707	8528707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	49	388	0	ENST00000356435.5:c.425C>A	p.Thr142Lys	p.T142K	ENST00000356435		142	aCg/aAg																																																																															
WT1	7490	MSKCC	GRCh37	11	32417944	32417944	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	34	448	0	ENST00000332351.3:c.1108C>A	p.Arg370Ser	p.R370S	ENST00000332351	NM_024426.4	370	Cgt/Agt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37667816	37667816	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	55	553	0	ENST00000447079.4:c.2701T>G	p.Tyr901Asp	p.Y901D	ENST00000447079	NM_015083.1	901	Tac/Gac																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650882	37650883	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0030162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	72	690	0	ENST00000447079.4:c.2356_2357del	p.Val786CysfsTer2	p.V786Cfs*2	ENST00000447079	NM_015083.1	785	aGT/a																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265202	46265202	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	32	390	1	ENST00000371998.3:c.2072A>G	p.Asn691Ser	p.N691S	ENST00000371998		691	aAt/aGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	225	284	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0030165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	321	440	1	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11958241	11958242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0030165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	108	436	0	ENST00000353533.5:c.153_154dup	p.Pro52HisfsTer11	p.P52Hfs*11	ENST00000353533	NM_003010.3	51	cca/cCAca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	71	493	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112602	115112602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	71	635	2	ENST00000257566.3:c.1138G>A	p.Glu380Lys	p.E380K	ENST00000257566	NM_016569.3	380	Gag/Aag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729757	162729757	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	42	448	0	ENST00000367921.3:c.843C>G	p.Phe281Leu	p.F281L	ENST00000367921	NM_006182.2	281	ttC/ttG																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112745494	112745494	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	53	461	0	ENST00000369452.4:c.812A>G	p.Asn271Ser	p.N271S	ENST00000369452	NM_007373.3	271	aAt/aGt																																																																															
MDM2	4193	MSKCC	GRCh37	12	69210685	69210685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	31	370	0	ENST00000462284.1:c.268G>T	p.Asp90Tyr	p.D90Y	ENST00000462284	NM_002392.5	90	Gat/Tat																																																																															
CDH1	999	MSKCC	GRCh37	16	68845698	68845698	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	93	497	0	ENST00000261769.5:c.944A>G	p.Asn315Ser	p.N315S	ENST00000261769	NM_004360.3	315	aAt/aGt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618649	37618649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	42	445	0	ENST00000447079.4:c.325C>T	p.His109Tyr	p.H109Y	ENST00000447079	NM_015083.1	109	Cac/Tac																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27777862	27777862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	24	261	0	ENST00000369163.2:c.11C>T	p.Thr4Met	p.T4M	ENST00000369163	NM_003536.2	4	aCg/aTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961336	15961336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	104	449	0	ENST00000268712.3:c.6053G>A	p.Arg2018Gln	p.R2018Q	ENST00000268712	NM_006311.3	2018	cGa/cAa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115947	8115965	+	frameshift_variant	Frame_Shift_Del	DEL	ACCACACCACCCCTCCAGC	ACCACACCACCCCTCCAGC	-			P-0030175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	56	308	0	ENST00000346208.3:c.1294_1312del	p.Pro432TrpfsTer37	p.P432Wfs*37	ENST00000346208		431	ggACCACACCACCCCTCCAGC/gg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111884617	111884617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	169	520	0	ENST00000341259.2:c.793C>G	p.Arg265Gly	p.R265G	ENST00000341259	NM_005475.2	265	Cgg/Ggg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936036	178936036	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	19	77	0	ENST00000263967.3:c.1578T>A	p.Asn526Lys	p.N526K	ENST00000263967	NM_006218.2	526	aaT/aaA																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372047	55372047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	218	358	0	ENST00000297316.4:c.737C>T	p.Pro246Leu	p.P246L	ENST00000297316	NM_022454.3	246	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	12	388	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211834	2211834	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	27	569	0	ENST00000398665.3:c.1550A>T	p.Gln517Leu	p.Q517L	ENST00000398665	NM_032482.2	517	cAg/cTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1293485	1293485	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	98	748	0	ENST00000310581.5:c.1516C>A	p.Gln506Lys	p.Q506K	ENST00000310581	NM_198253.2	506	Cag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0030188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	135	367	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123688	11123688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	174	538	0	ENST00000344626.4:c.2338G>A	p.Glu780Lys	p.E780K	ENST00000344626	NM_003072.3	780	Gag/Aag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500562	99500562	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	147	474	0	ENST00000268035.6:c.3995G>T	p.Gly1332Val	p.G1332V	ENST00000268035	NM_000875.3	1332	gGg/gTg																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56774218	56774218	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0030188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	83	264	0	ENST00000337432.4:c.569A>G	p.Glu190Gly	p.E190G	ENST00000337432	NM_058216.2	190	gAg/gGg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610475	10610475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	194	507	0	ENST00000171111.5:c.235G>T	p.Val79Phe	p.V79F	ENST00000171111	NM_203500.1	79	Gtc/Ttc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223650	36223650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	238	736	0	ENST00000222270.7:c.6200G>T	p.Gly2067Val	p.G2067V	ENST00000222270	NM_014727.1	2067	gGc/gTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510230	187510230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	134	426	0	ENST00000441802.2:c.13283G>T	p.Gly4428Val	p.G4428V	ENST00000441802	NM_005245.3	4428	gGc/gTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319946	8319946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	65	236	0	ENST00000356435.5:c.5555G>T	p.Gly1852Val	p.G1852V	ENST00000356435		1852	gGa/gTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521468	8521468	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	156	461	0	ENST00000356435.5:c.770G>C	p.Cys257Ser	p.C257S	ENST00000356435		257	tGt/tCt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028778	47028778	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	211	346	0	ENST00000329236.7:c.82G>T	p.Glu28Ter	p.E28*	ENST00000329236	NM_001204466.1	28	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0030189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	215	569	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
MET	4233	MSKCC	GRCh37	7	116397714	116397714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	123	429	0	ENST00000397752.3:c.1988C>T	p.Ser663Leu	p.S663L	ENST00000397752	NM_000245.2	663	tCg/tTg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784397	9784397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	187	517	0	ENST00000377346.4:c.2782G>A	p.Glu928Lys	p.E928K	ENST00000377346	NM_005026.3	928	Gag/Aag																																																																															
SRC	6714	MSKCC	GRCh37	20	36022602	36022602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	300	520	1	ENST00000358208.4:c.475C>T	p.Arg159Trp	p.R159W	ENST00000358208		159	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175009	112175030	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	AGTGGTCAGCCTCAAAAGGCTG	AGTGGTCAGCCTCAAAAGGCTG	TGAGGCTGA			P-0030189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	40	217	1	ENST00000257430.4:c.3718_3739delinsTGAGGCTGA	p.Ser1240Ter	p.S1240*	ENST00000257430	NM_000038.5	1240	AGTGGTCAGCCTCAAAAGGCTGcc/TGAGGCTGAcc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332297	70332297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	30	422	0	ENST00000373644.4:c.202G>A	p.Val68Met	p.V68M	ENST00000373644	NM_030625.2	68	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112173600	112173600	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0030196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	97	343	0	ENST00000257430.4:c.2309C>G	p.Ser770Ter	p.S770*	ENST00000257430	NM_000038.5	770	tCa/tGa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1623981	1623981	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	196	499	0	ENST00000344749.5:c.518del	p.Val173AlafsTer111	p.V173Afs*111	ENST00000344749	NM_001136139.2	173	gTc/gc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0030202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	53	325	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444762	49444762	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	85	700	0	ENST00000301067.7:c.2704G>T	p.Glu902Ter	p.E902*	ENST00000301067	NM_003482.3	902	Gag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879016	151879016	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	97	463	0	ENST00000262189.6:c.5929del	p.Gln1977AsnfsTer13	p.Q1977Nfs*13	ENST00000262189	NM_170606.2	1977	Caa/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0030204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	215	287	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852590	63852590	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	76	347	0	ENST00000279873.7:c.3368C>G	p.Ser1123Trp	p.S1123W	ENST00000279873	NM_032199.2	1123	tCg/tGg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69039621	69039621	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	89	362	0	ENST00000288368.4:c.3733T>C	p.Cys1245Arg	p.C1245R	ENST00000288368	NM_024870.2	1245	Tgt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0030211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	60	430	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166214	118166214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	42	403	3	ENST00000369448.3:c.724G>A	p.Gly242Arg	p.G242R	ENST00000369448	NM_017709.3	242	Ggg/Agg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829549	72829549	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	76	626	1	ENST00000268489.5:c.7032C>G	p.Ile2344Met	p.I2344M	ENST00000268489	NM_006885.3	2344	atC/atG																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70970993	70970993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	79	755	5	ENST00000276594.2:c.1268C>T	p.Pro423Leu	p.P423L	ENST00000276594	NM_024504.3	423	cCc/cTc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563036	21563036	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	85	803	3	ENST00000382592.4:c.883G>T	p.Gly295Ter	p.G295*	ENST00000382592	NM_014572.2	295	Gga/Tga																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628550	90628550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	67	744	5	ENST00000330062.3:c.1037C>T	p.Ala346Val	p.A346V	ENST00000330062	NM_002168.2	346	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578416	7578418	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0030211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	85	672	4	ENST00000269305.4:c.512_514del	p.Glu171del	p.E171del	ENST00000269305	NM_001126112.2	171	gAGGtt/gtt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0030238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	78	286	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0030238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	113	478	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0030238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	118	456	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0030238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	75	336	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0030238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	30	179	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2120572	2120572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	325	517	0	ENST00000219476.3:c.1832G>A	p.Arg611Gln	p.R611Q	ENST00000219476	NM_000548.3	611	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710600	114710600	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	95	372	0	ENST00000543371.1:c.85G>T	p.Glu29Ter	p.E29*	ENST00000543371	NM_001198531.1	29	Gag/Tag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509046	106509046	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	36	375	1	ENST00000359195.3:c.1040A>G	p.Glu347Gly	p.E347G	ENST00000359195	NM_002649.2	347	gAg/gGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0030243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	125	406	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100310	157100310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	61	277	0	ENST00000346085.5:c.1247C>T	p.Thr416Ile	p.T416I	ENST00000346085	NM_020732.3	416	aCc/aTc																																																																															
CDH1	999	MSKCC	GRCh37	16	68772200	68772223	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GTCTCCTCTTGGCTCTGCCAGGAG	GTCTCCTCTTGGCTCTGCCAGGAG	A			P-0030243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	98	607	0	ENST00000261769.5:c.49_72delinsA	p.Val17ThrfsTer9	p.V17Tfs*9	ENST00000261769	NM_004360.3	17	GTCTCCTCTTGGCTCTGCCAGGAG/A																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	64	369	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	74	408	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	175	535	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974721	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	55	242	0	ENST00000304494.5:c.106del	p.Ala36ArgfsTer17	p.A36Rfs*17	ENST00000304494	NM_000077.4	36	Gcg/cg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030585	47030585	+	intron_variant	Intron	SNP	T	T	G			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	81	611	1	ENST00000329236.7:c.201+1688T>G		p.*67*	ENST00000329236	NM_001204466.1	67																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	49	402	0	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459531	50459531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	64	282	0	ENST00000331340.3:c.820C>T	p.Arg274Cys	p.R274C	ENST00000331340	NM_006060.4	274	Cgt/Tgt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223131	5223131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	113	591	1	ENST00000357368.4:c.2672C>T	p.Thr891Met	p.T891M	ENST00000357368	NM_002850.3	891	aCg/aTg																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	134	527	7	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
AR	367	MSKCC	GRCh37	X	66765159	66765194	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	16	234	0	ENST00000374690.3:c.204_239del	p.Gln69_Gln80del	p.Q69_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg																																																																															
CIC	23152	MSKCC	GRCh37	19	42795187	42795187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	60	638	0	ENST00000575354.2:c.2267C>T	p.Ala756Val	p.A756V	ENST00000575354	NM_015125.3	756	gCg/gTg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	109	455	0	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966593	36966593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	79	436	0	ENST00000358127.4:c.733C>T	p.His245Tyr	p.H245Y	ENST00000358127	NM_001280556.1	245	Cac/Tac																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	117	426	0	ENST00000262741.5:c.883delA	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403254	213403254	+	frameshift_variant,start_lost	Frame_Shift_Del	DEL	T	T	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	61	325	0	ENST00000342788.4:c.1delA	p.Met1?	p.M1?	ENST00000342788	NM_005235.2	1	Atg/tg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	149	507	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166202	118166202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	68	378	0	ENST00000369448.3:c.712G>A	p.Glu238Lys	p.E238K	ENST00000369448	NM_017709.3	238	Gaa/Aaa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465301	120465301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	62	363	0	ENST00000256646.2:c.4960G>A	p.Ala1654Thr	p.A1654T	ENST00000256646	NM_024408.3	1654	Gcc/Acc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44514870	44514870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	57	349	0	ENST00000291552.4:c.377C>T	p.Ala126Val	p.A126V	ENST00000291552	NM_006758.2	126	gCt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971139	21971139	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	51	290	1	ENST00000361570.3:c.385C>T	p.Arg129Ter	p.R129*	ENST00000361570	NM_058195.3	129	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576486	67576487	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	68	393	0	ENST00000274335.5:c.770dup	p.Asn257LysfsTer10	p.N257Kfs*10	ENST00000274335		255	-/A																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	80	515	1	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114925402	114925402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs768101780		P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	121	533	1	ENST00000543371.1:c.1485del	p.Ser496ProfsTer5	p.S496Pfs*5	ENST00000543371	NM_001198531.1	494	Ccc/cc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94911005	94911007	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	109	580	0	ENST00000536441.1:c.1123_1125del	p.Leu375del	p.L375del	ENST00000536441	NM_144665.3	375	CTT/-																																																																															
POLE	5426	MSKCC	GRCh37	12	133240657	133240657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	90	482	1	ENST00000320574.5:c.2639C>T	p.Thr880Met	p.T880M	ENST00000320574	NM_006231.2	880	aCg/aTg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324463	31324463	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	85	407	0	ENST00000412585.2:c.343+2T>C		p.X115_splice	ENST00000412585	NM_005514.6	115																																																																																
FGF3	2248	MSKCC	GRCh37	11	69633565	69633565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	71	170	0	ENST00000334134.2:c.137G>A	p.Arg46His	p.R46H	ENST00000334134	NM_005247.2	46	cGc/cAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858037	9858037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	63	472	0	ENST00000330684.3:c.3364G>A	p.Gly1122Ser	p.G1122S	ENST00000330684	NM_001134407.1	1122	Ggt/Agt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821673	72821673	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	43	177	0	ENST00000268489.5:c.10502T>C	p.Val3501Ala	p.V3501A	ENST00000268489	NM_006885.3	3501	gTg/gCg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976166	18976166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	112	563	0	ENST00000262803.5:c.2926G>A	p.Val976Met	p.V976M	ENST00000262803	NM_002911.3	976	Gtg/Atg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119717	70119717	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	96	600	2	ENST00000245479.2:c.723del	p.Thr243ProfsTer10	p.T243Pfs*10	ENST00000245479	NM_000346.3	240	aCc/ac																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038935	12038935	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	73	359	0	ENST00000396373.4:c.1228G>T	p.Glu410Ter	p.E410*	ENST00000396373	NM_001987.4	410	Gag/Tag																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986774	36986774	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	23	62	0	ENST00000354822.5:c.915del	p.Ala306ArgfsTer75	p.A306Rfs*75	ENST00000354822	NM_001079668.2	305	ccC/cc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21630862	21630862	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202110155		P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	57	515	0	ENST00000421138.2:c.742G>A	p.Ala248Thr	p.A248T	ENST00000421138		248	Gca/Aca																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664720	138664720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	23	165	0	ENST00000330315.3:c.845C>T	p.Ala282Val	p.A282V	ENST00000330315	NM_023067.3	282	gCc/gTc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775780	9775780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	91	584	0	ENST00000377346.4:c.323G>A	p.Arg108His	p.R108H	ENST00000377346	NM_005026.3	108	cGc/cAc																																																																															
STK40	83931	MSKCC	GRCh37	1	36809860	36809860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	84	454	0	ENST00000373129.3:c.745C>T	p.Pro249Ser	p.P249S	ENST00000373129	NM_032017.1	249	Ccg/Tcg																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612752	228612752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	105	510	0	ENST00000366696.1:c.275C>T	p.Ala92Val	p.A92V	ENST00000366696	NM_003493.2	92	gCg/gTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114901046	114901046	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	78	391	0	ENST00000543371.1:c.656A>G	p.His219Arg	p.H219R	ENST00000543371	NM_001198531.1	219	cAc/cGc																																																																															
RAD52	5893	MSKCC	GRCh37	12	1023179	1023179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	86	447	1	ENST00000358495.3:c.1076C>T	p.Ala359Val	p.A359V	ENST00000358495	NM_134424.2	359	gCc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435113	49435113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	38	466	0	ENST00000301067.7:c.6440C>T	p.Ala2147Val	p.A2147V	ENST00000301067	NM_003482.3	2147	gCg/gTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435993	110435993	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	128	656	0	ENST00000375856.3:c.2408A>G	p.Tyr803Cys	p.Y803C	ENST00000375856	NM_003749.2	803	tAc/tGc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988193	36988193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	52	341	0	ENST00000354822.5:c.460G>A	p.Ala154Thr	p.A154T	ENST00000354822	NM_001079668.2	154	Gcc/Acc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483977	88483977	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	61	324	1	ENST00000360948.2:c.1593G>T	p.Gln531His	p.Q531H	ENST00000360948	NM_001012338.2	531	caG/caT																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799380	88799380	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	37	244	0	ENST00000360948.2:c.5A>G	p.Asp2Gly	p.D2G	ENST00000360948	NM_001012338.2	2	gAt/gGt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99452071	99452071	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	28	372	0	ENST00000268035.6:c.1405A>G	p.Lys469Glu	p.K469E	ENST00000268035	NM_000875.3	469	Aaa/Gaa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23632773	23632773	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	37	436	0	ENST00000261584.4:c.3023C>A	p.Pro1008His	p.P1008H	ENST00000261584	NM_024675.3	1008	cCc/cAc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40456407	40456407	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	104	506	0	ENST00000345506.4:c.1217A>G	p.His406Arg	p.H406R	ENST00000345506	NM_003152.3	406	cAc/cGc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621884	1621884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	81	582	1	ENST00000344749.5:c.908G>A	p.Gly303Asp	p.G303D	ENST00000344749	NM_001136139.2	303	gGc/gAc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383241	42383242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	101	560	0	ENST00000221972.3:c.263dup	p.Asn88LysfsTer94	p.N88Kfs*94	ENST00000221972	NM_021601.3	87	-/A																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918792	50918792	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	186	610	0	ENST00000440232.2:c.2662A>G	p.Thr888Ala	p.T888A	ENST00000440232	NM_002691.3	888	Acc/Gcc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919885	50919885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	164	544	0	ENST00000440232.2:c.2972G>A	p.Cys991Tyr	p.C991Y	ENST00000440232	NM_002691.3	991	tGc/tAc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39347478	39347478	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	55	255	0	ENST00000402219.2:c.86del	p.Lys29ArgfsTer23	p.K29Rfs*23	ENST00000402219	NM_005633.3	29	aAg/ag																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630454	47630454	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	87	577	0	ENST00000233146.2:c.124T>C	p.Phe42Leu	p.F42L	ENST00000233146	NM_000251.2	42	Ttc/Ctc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121317	29121317	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	47	528	1	ENST00000328354.6:c.358del	p.Ser120AlafsTer11	p.S120Afs*11	ENST00000328354	NM_007194.3	120	Agc/gc																																																																															
EP300	2033	MSKCC	GRCh37	22	41573722	41573722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	101	574	1	ENST00000263253.7:c.6007C>T	p.Pro2003Ser	p.P2003S	ENST00000263253	NM_001429.3	2003	Ccc/Tcc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713915	30713915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	78	356	0	ENST00000359013.4:c.1315G>A	p.Ala439Thr	p.A439T	ENST00000359013	NM_001024847.2	439	Gct/Act																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952087	178952087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	82	342	0	ENST00000263967.3:c.3142C>T	p.His1048Tyr	p.H1048Y	ENST00000263967	NM_006218.2	1048	Cat/Tat																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139799	55139799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	63	436	0	ENST00000257290.5:c.1460G>A	p.Arg487His	p.R487H	ENST00000257290	NM_006206.4	487	cGt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539619	187539619	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	59	280	0	ENST00000441802.2:c.8121C>A	p.Phe2707Leu	p.F2707L	ENST00000441802	NM_005245.3	2707	ttC/ttA																																																																															
TERT	7015	MSKCC	GRCh37	5	1264630	1264630	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	90	558	0	ENST00000310581.5:c.2732A>G	p.Asp911Gly	p.D911G	ENST00000310581	NM_198253.2	911	gAc/gGc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518089	176518089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	89	512	0	ENST00000292408.4:c.587G>A	p.Arg196His	p.R196H	ENST00000292408	NM_213647.1	196	cGc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528666	157528666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	80	530	0	ENST00000346085.5:c.6391T>C	p.Ser2131Pro	p.S2131P	ENST00000346085	NM_020732.3	2131	Tcc/Ccc																																																																															
MET	4233	MSKCC	GRCh37	7	116418998	116418998	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	42	216	0	ENST00000397752.3:c.3509del	p.Arg1170GlnfsTer9	p.R1170Qfs*9	ENST00000397752	NM_000245.2	1170	cGa/ca																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372062	55372062	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	62	335	0	ENST00000297316.4:c.752A>G	p.Tyr251Cys	p.Y251C	ENST00000297316	NM_022454.3	251	tAc/tGc																																																																															
NBN	4683	MSKCC	GRCh37	8	90982704	90982704	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	84	279	0	ENST00000265433.3:c.784T>C	p.Phe262Leu	p.F262L	ENST00000265433	NM_002485.4	262	Ttc/Ctc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5055691	5055691	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	72	270	0	ENST00000381652.3:c.959T>C	p.Phe320Ser	p.F320S	ENST00000381652	NM_004972.3	320	tTt/tCt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080345	5080345	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	24	251	0	ENST00000381652.3:c.2248G>T	p.Gly750Ter	p.G750*	ENST00000381652	NM_004972.3	750	Gga/Tga																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80412517	80412517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	76	271	0	ENST00000286548.4:c.524C>T	p.Thr175Met	p.T175M	ENST00000286548	NM_002072.3	175	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	281	440	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248151	110248151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	70	371	0	ENST00000374672.4:c.1321G>A	p.Asp441Asn	p.D441N	ENST00000374672	NM_004235.4	441	Gat/Aat																																																																															
CDH1	999	MSKCC	GRCh37	16	68844155	68844155	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	86	600	0	ENST00000261769.5:c.743T>G	p.Ile248Ser	p.I248S	ENST00000261769	NM_004360.3	248	aTt/aGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0030259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	23	167	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	52	325	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	58	388	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0030259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	38	236	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175958497	175958497	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0030259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	55	284	1	ENST00000367669.3:c.1847+1G>A		p.X616_splice	ENST00000367669	NM_022457.5	616																																																																																
APC	324	MSKCC	GRCh37	5	112173512	112173513	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0030259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	33	231	0	ENST00000257430.4:c.2224_2225dup	p.Met743LeufsTer19	p.M743Lfs*19	ENST00000257430	NM_000038.5	741	aat/aATat																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608219	28608219	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0030259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	35	392	0	ENST00000241453.7:c.1837G>T	p.Gly613Trp	p.G613W	ENST00000241453	NM_004119.2	613	Ggg/Tgg																																																																															
B2M	567	MSKCC	GRCh37	15	45007624	45007624	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TAT			P-0030259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	32	178	0	ENST00000558401.1:c.71delinsTAT	p.Thr24IlefsTer21	p.T24Ifs*21	ENST00000558401	NM_004048.2	24	aCt/aTATt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	20	531	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0030262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	229	485	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	154	338	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0030262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	56	192	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9927977	9927977	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	43	269	0	ENST00000330684.3:c.1762T>G	p.Leu588Val	p.L588V	ENST00000330684	NM_001134407.1	588	Tta/Gta																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794923	242794923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	72	573	1	ENST00000334409.5:c.286C>T	p.Arg96Cys	p.R96C	ENST00000334409	NM_005018.2	96	Cgt/Tgt																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797216	32797216	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	98	498	0	ENST00000374899.4:c.1893T>A	p.Asp631Glu	p.D631E	ENST00000374899	NM_018833.2	631	gaT/gaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	230	347	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ATR	545	MSKCC	GRCh37	3	142261554	142261555	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	257	425	2	ENST00000350721.4:c.3402dupT	p.Asn1135Ter	p.N1135*	ENST00000350721	NM_001184.3	1134	-/T																																																																															
TP53	7157	MSKCC	GRCh37	17	7578418	7578418	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	127	589	0	ENST00000269305.4:c.512A>G	p.Glu171Gly	p.E171G	ENST00000269305	NM_001126112.2	171	gAg/gGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	33	306	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0030269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	57	251	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0030269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	48	219	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0030269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	46	241	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943631	9943631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	63	331	0	ENST00000330684.3:c.1310G>A	p.Arg437Gln	p.R437Q	ENST00000330684	NM_001134407.1	437	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575077	48575077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	48	243	0	ENST00000342988.3:c.271C>A	p.Pro91Thr	p.P91T	ENST00000342988	NM_005359.5	91	Cct/Act																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246091255	246091255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	73	282	0	ENST00000388985.4:c.680G>T	p.Arg227Leu	p.R227L	ENST00000388985		227	cGa/cTa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624275	89624276	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	79	237	0	ENST00000371953.3:c.51dup	p.Glu18ArgfsTer26	p.E18Rfs*26	ENST00000371953	NM_000314.4	17	caa/cAaa																																																																															
MGA	23269	MSKCC	GRCh37	15	42042757	42042757	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	26	289	0	ENST00000219905.7:c.6952G>T	p.Glu2318Ter	p.E2318*	ENST00000219905	NM_001164273.1	2318	Gaa/Taa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78831653	78831653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	63	333	0	ENST00000306801.3:c.1462C>T	p.Arg488Trp	p.R488W	ENST00000306801	NM_020761.2	488	Cgg/Tgg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374844	45374844	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0030269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	55	278	0	ENST00000262160.6:c.997+2T>C		p.X333_splice	ENST00000262160	NM_005901.5	333																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	33	372	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952139	178952139	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	88	245	0	ENST00000263967.3:c.3194A>T	p.His1065Leu	p.H1065L	ENST00000263967	NM_006218.2	1065	cAt/cTt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011228	12011228	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0030271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	82	288	0	ENST00000353533.5:c.633+2T>G		p.X211_splice	ENST00000353533	NM_003010.3	211																																																																																
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0029962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	190	654	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400777	72400777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	51	303	0	ENST00000357731.5:c.394C>T	p.His132Tyr	p.H132Y	ENST00000357731	NM_173808.2	132	Cat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0029965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	488	474	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0029965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	83	193	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64132833	64132833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	483	539	0	ENST00000334205.4:c.967C>T	p.Arg323Cys	p.R323C	ENST00000334205	NM_003942.2	323	Cgc/Tgc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190744	11190744	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148876562		P-0029965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	50	522	0	ENST00000361445.4:c.5455C>T	p.His1819Tyr	p.H1819Y	ENST00000361445	NM_004958.3	1819	Cat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112174620	112174620	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0029965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	99	346	0	ENST00000257430.4:c.3329C>G	p.Ser1110Ter	p.S1110*	ENST00000257430	NM_000038.5	1110	tCa/tGa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68995526	68995526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	384	507	0	ENST00000288368.4:c.1930G>T	p.Val644Phe	p.V644F	ENST00000288368	NM_024870.2	644	Gtt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	26	489	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	128	276	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402543	139402543	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200871631		P-0030088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	86	458	0	ENST00000277541.6:c.3374C>T	p.Ala1125Val	p.A1125V	ENST00000277541	NM_017617.3	1125	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0030088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	214	541	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
APC	324	MSKCC	GRCh37	5	112170683	112170683	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	122	288	0	ENST00000257430.4:c.1779G>A	p.Trp593Ter	p.W593*	ENST00000257430	NM_000038.5	593	tgG/tgA																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129416	64129417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGATTGAGAC			P-0030088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	94	496	0	ENST00000334205.4:c.855_856insAGACGCGATTG	p.Gly286ArgfsTer93	p.G286Rfs*93	ENST00000334205	NM_003942.2	283	aag/aaGCGATTGAGACg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129460	64129460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	111	489	0	ENST00000334205.4:c.892C>A	p.His298Asn	p.H298N	ENST00000334205	NM_003942.2	298	Cat/Aat																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88428944	88428944	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	35	128	0	ENST00000360948.2:c.2156A>G	p.Asp719Gly	p.D719G	ENST00000360948	NM_001012338.2	719	gAt/gGt																																																																															
BLM	641	MSKCC	GRCh37	15	91306366	91306367	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0030088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	48	253	0	ENST00000355112.3:c.2054_2055del	p.Cys685PhefsTer10	p.C685Ffs*10	ENST00000355112	NM_000057.2	685	TGt/t																																																																															
MSH2	4436	MSKCC	GRCh37	2	47705582	47705582	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	127	250	0	ENST00000233146.2:c.2382A>G	p.Ile794Met	p.I794M	ENST00000233146	NM_000251.2	794	atA/atG																																																																															
APC	324	MSKCC	GRCh37	5	112175419	112175420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATAG			P-0030088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	50	255	0	ENST00000257430.4:c.4128_4129insATAG	p.Val1377IlefsTer10	p.V1377Ifs*10	ENST00000257430	NM_000038.5	1376	-/ATAG																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123837	46123837	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0030091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	27	273	0	ENST00000334344.6:c.103A>T	p.Lys35Ter	p.K35*	ENST00000334344	NM_152641.2	35	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578476	7578476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	98	668	0	ENST00000269305.4:c.454C>T	p.Pro152Ser	p.P152S	ENST00000269305	NM_001126112.2	152	Ccg/Tcg																																																																															
ATM	472	MSKCC	GRCh37	11	108114748	108114748	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	21	322	0	ENST00000278616.4:c.565A>G	p.Arg189Gly	p.R189G	ENST00000278616	NM_000051.3	189	Aga/Gga																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112915487	112915487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	24	439	0	ENST00000351677.2:c.886G>T	p.Asp296Tyr	p.D296Y	ENST00000351677	NM_002834.3	296	Gat/Tat																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056347	180056347	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs138606846		P-0030091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	78	660	0	ENST00000261937.6:c.897C>A	p.Asn299Lys	p.N299K	ENST00000261937	NM_182925.4	299	aaC/aaA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0030104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	102	585	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	77	668	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0030104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	78	588	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	99	296	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	74	456	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	97	469	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515211	103515211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	63	387	1	ENST00000355739.4:c.1712C>T	p.Pro571Leu	p.P571L	ENST00000355739	NM_000123.3	571	cCg/cTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597355	10597355	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	110	599	0	ENST00000171111.5:c.1848G>C	p.Gln616His	p.Q616H	ENST00000171111	NM_203500.1	616	caG/caC																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001581	150001581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	55	320	0	ENST00000253339.5:c.2023C>A	p.Gln675Lys	p.Q675K	ENST00000253339		675	Caa/Aaa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	38	245	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	146	517	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0028642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	152	429	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	57	232	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724322	112724322	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	140	517	0	ENST00000369452.4:c.206A>G	p.Asp69Gly	p.D69G	ENST00000369452	NM_007373.3	69	gAc/gGc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851306	156851306	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	125	477	1	ENST00000524377.1:c.2263G>T	p.Glu755Ter	p.E755*	ENST00000524377	NM_002529.3	755	Gag/Tag																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741825	17741825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	49	131	0	ENST00000250003.3:c.496G>A	p.Asp166Asn	p.D166N	ENST00000250003	NM_002478.4	166	Gac/Aac																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119668	70119685	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTTTATTGTCCACAGGG	CTTTTATTGTCCACAGGG	-			P-0028642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	89	366	0	ENST00000245479.2:c.686-15_688del		p.X229_splice	ENST00000245479	NM_000346.3	229																																																																																
VHL	7428	MSKCC	GRCh37	3	10188284	10188284	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	86	474	0	ENST00000256474.2:c.427G>C	p.Asp143His	p.D143H	ENST00000256474	NM_000551.3	143	Gac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0028646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	333	660	0	ENST00000269305.4:c.672+1delG		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
FGF4	2249	MSKCC	GRCh37	11	69588177	69588177	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	165	665	0	ENST00000168712.1:c.521A>T	p.Tyr174Phe	p.Y174F	ENST00000168712	NM_002007.2	174	tAc/tTc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93974331	93974331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	151	585	0	ENST00000369303.4:c.1723G>T	p.Gly575Cys	p.G575C	ENST00000369303	NM_004440.3	575	Ggc/Tgc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	45	376	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	72	550	0	ENST00000269305.4:c.764T>A	p.Ile255Asn	p.I255N	ENST00000269305	NM_001126112.2	255	aTc/aAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29560043	29560043	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	68	281	1	ENST00000358273.4:c.3520C>T	p.Gln1174Ter	p.Q1174*	ENST00000358273	NM_001042492.2	1174	Cag/Tag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43762237	43762237	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	60	559	0	ENST00000382044.4:c.1208C>G	p.Ser403Cys	p.S403C	ENST00000382044	NM_001141980.1	403	tCt/tGt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420206	88420206	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	40	441	0	ENST00000360948.2:c.2480del	p.Leu827TrpfsTer20	p.L827Wfs*20	ENST00000360948	NM_001012338.2	827	tTg/tg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121536	2121536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	134	622	1	ENST00000219476.3:c.1865G>T	p.Arg622Leu	p.R622L	ENST00000219476	NM_000548.3	622	cGg/cTg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39620697	39620697	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	27	267	0	ENST00000262039.4:c.2095A>T	p.Ser699Cys	p.S699C	ENST00000262039	NM_002647.2	699	Agc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41420080	41420080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	15	292	0	ENST00000373198.4:c.241G>A	p.Gly81Arg	p.G81R	ENST00000373198	NM_133170.3	81	Ggg/Agg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41514493	41514493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	57	494	0	ENST00000373198.4:c.168G>T	p.Gln56His	p.Q56H	ENST00000373198	NM_133170.3	56	caG/caT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187531013	187531013	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	27	405	0	ENST00000441802.2:c.10010A>G	p.Gln3337Arg	p.Q3337R	ENST00000441802	NM_005245.3	3337	cAa/cGa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86674287	86674288	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0028652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	29	369	0	ENST00000274376.6:c.2422_2423del	p.Gln808ValfsTer21	p.Q808Vfs*21	ENST00000274376	NM_002890.2	807	ACa/a																																																																															
ETV1	2115	MSKCC	GRCh37	7	13949311	13949311	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0028652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	34	255	1	ENST00000405192.2:c.817A>T	p.Lys273Ter	p.K273*	ENST00000405192	NM_001163147.1	273	Aag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151842313	151842313	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	41	314	0	ENST00000262189.6:c.14099del	p.Pro4700LeufsTer16	p.P4700Lfs*16	ENST00000262189	NM_170606.2	4700	cCt/ct																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465651	8465651	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	27	386	0	ENST00000356435.5:c.3529C>G	p.Arg1177Gly	p.R1177G	ENST00000356435		1177	Cgc/Ggc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53240688	53240688	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	54	516	0	ENST00000375401.3:c.1392del	p.Glu465LysfsTer12	p.E465Kfs*12	ENST00000375401	NM_004187.3	464	ccC/cc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0028654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	148	493	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
PMS2	5395	MSKCC	GRCh37	7	6035253	6035253	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	98	313	0	ENST00000265849.7:c.815T>G	p.Phe272Cys	p.F272C	ENST00000265849	NM_000535.5	272	tTc/tGc																																																																															
HGF	3082	MSKCC	GRCh37	7	81331912	81331912	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	19	217	1	ENST00000222390.5:c.2172G>T	p.Lys724Asn	p.K724N	ENST00000222390	NM_000601.4	724	aaG/aaT																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0028661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	74	311	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112173830	112173831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	162	263	0	ENST00000257430.4:c.2544dupA	p.Asp849ArgfsTer2	p.D849Rfs*2	ENST00000257430	NM_000038.5	847	gaa/gAaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936093	178936093	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913275		P-0028661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	584	423	0	ENST00000263967.3:c.1635G>C	p.Glu545Asp	p.E545D	ENST00000263967	NM_006218.2	545	gaG/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876660825		P-0028661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	301	452	0	ENST00000269305.4:c.569C>G	p.Pro190Arg	p.P190R	ENST00000269305	NM_001126112.2	190	cCt/cGt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981564	201981564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	562	548	0	ENST00000359651.3:c.478G>A	p.Asp160Asn	p.D160N	ENST00000359651		160	Gac/Aac																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40354795	40354795	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	283	423	0	ENST00000293328.3:c.2109G>T	p.Gln703His	p.Q703H	ENST00000293328	NM_012448.3	703	caG/caT																																																																															
STAT3	6774	MSKCC	GRCh37	17	40481618	40481618	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	323	383	0	ENST00000264657.5:c.1187T>C	p.Met396Thr	p.M396T	ENST00000264657	NM_139276.2	396	aTg/aCg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488730	212488730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	251	320	0	ENST00000342788.4:c.2119C>A	p.Gln707Lys	p.Q707K	ENST00000342788	NM_005235.2	707	Caa/Aaa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589572	67589580	+	inframe_deletion	In_Frame_Del	DEL	AGGGAAAAA	AGGGAAAAA	-			P-0028661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	139	209	0	ENST00000274335.5:c.1336_1344del	p.Gly446_Lys448del	p.G446_K448del	ENST00000274335		445	gtAGGGAAAAAa/gta																																																																															
APC	324	MSKCC	GRCh37	5	112175768	112175784	+	frameshift_variant	Frame_Shift_Del	DEL	ACGGAAAGTACTCCAGA	ACGGAAAGTACTCCAGA	C			P-0028661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	76	209	0	ENST00000257430.4:c.4477_4493delinsC	p.Thr1493LeufsTer9	p.T1493Lfs*9	ENST00000257430	NM_000038.5	1493	ACGGAAAGTACTCCAGAt/Ct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0028670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	1698	622	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578482	7578482	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	388	764	0	ENST00000269305.4:c.448del	p.Thr150HisfsTer20	p.T150Hfs*20	ENST00000269305	NM_001126112.2	150	Aca/ca																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84403325	84403325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	142	445	0	ENST00000321945.7:c.160G>A	p.Glu54Lys	p.E54K	ENST00000321945	NM_139076.2	54	Gaa/Aaa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777667	9777667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	77	649	1	ENST00000377346.4:c.1003G>A	p.Ala335Thr	p.A335T	ENST00000377346	NM_005026.3	335	Gcc/Acc																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186506997	186506997	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	33	229	0	ENST00000323963.5:c.1163T>C	p.Ile388Thr	p.I388T	ENST00000323963		388	aTt/aCt																																																																															
NBN	4683	MSKCC	GRCh37	8	90967584	90967584	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	532	289	0	ENST00000265433.3:c.1324A>G	p.Ser442Gly	p.S442G	ENST00000265433	NM_002485.4	442	Agt/Ggt																																																																															
POLE	5426	MSKCC	GRCh37	12	133202788	133202788	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201165149		P-0028675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	83	558	1	ENST00000320574.5:c.6446G>A	p.Arg2149His	p.R2149H	ENST00000320574	NM_006231.2	2149	cGc/cAc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36934823	36934823	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145256322		P-0028675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	153	472	0	ENST00000361632.4:c.1510G>A	p.Val504Met	p.V504M	ENST00000361632		504	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578474	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	342	668	0	ENST00000269305.4:c.456delG	p.Gly154AlafsTer16	p.G154Afs*16	ENST00000269305	NM_001126112.2	152	ccG/cc																																																																															
MSI2	124540	MSKCC	GRCh37	17	55478746	55478746	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	62	431	0	ENST00000284073.2:c.319A>G	p.Thr107Ala	p.T107A	ENST00000284073	NM_138962.2	107	Aca/Gca																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026757	6026758	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0028675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	56	183	0	ENST00000265849.7:c.1638_1639del	p.Ser547ArgfsTer14	p.S547Rfs*14	ENST00000265849	NM_000535.5	546	ttTTca/ttca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	71	458	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RB1	5925	MSKCC	GRCh37	13	49030343	49030343	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0028677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	59	242	0	ENST00000267163.4:c.1818T>A	p.Tyr606Ter	p.Y606*	ENST00000267163	NM_000321.2	606	taT/taA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0028677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	123	561	0	ENST00000269305.4:c.782+1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	312	416	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0028680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	713	386	3	ENST00000269305.4:c.559+2T>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212248726	212248726	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	62	308	0	ENST00000342788.4:c.3541C>G	p.Gln1181Glu	p.Q1181E	ENST00000342788	NM_005235.2	1181	Caa/Gaa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867471	35867471	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	45	316	0	ENST00000303115.3:c.285G>C	p.Glu95Asp	p.E95D	ENST00000303115	NM_002185.3	95	gaG/gaC																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43745213	43745213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	69	379	1	ENST00000523873.1:c.126G>T	p.Lys42Asn	p.K42N	ENST00000523873		42	aaG/aaT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152055730	152055730	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	93	469	0	ENST00000262189.6:c.192del	p.Asp65MetfsTer40	p.D65Mfs*40	ENST00000262189	NM_170606.2	64	gaA/ga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044970	47044970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	653	610	0	ENST00000329236.7:c.2062C>T	p.Arg688Cys	p.R688C	ENST00000329236	NM_001204466.1	688	Cgc/Tgc																																																																															
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0028684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	201	688	1	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																															
CDH1	999	MSKCC	GRCh37	16	68846130	68846131	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	223	673	1	ENST00000261769.5:c.1102dup	p.Thr368AsnfsTer4	p.T368Nfs*4	ENST00000261769	NM_004360.3	367	-/A																																																																															
KIT	3815	MSKCC	GRCh37	4	55589770	55589771	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0028684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	88	374	0	ENST00000288135.5:c.1253dup	p.Tyr418Ter	p.Y418*	ENST00000288135	NM_000222.2	418	tac/tAac																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177771	56177772	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0028684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	62	295	0	ENST00000399503.3:c.2745_2746del	p.Ala917TyrfsTer12	p.A917Yfs*12	ENST00000399503	NM_005921.1	915	tTA/t																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	22	455	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MET	4233	MSKCC	GRCh37	7	116422150	116422150	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0028698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	31	431	0	ENST00000397752.3:c.3631A>G	p.Met1211Val	p.M1211V	ENST00000397752	NM_000245.2	1211	Atg/Gtg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041652	47041653	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0028698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	32	399	0	ENST00000329236.7:c.1644_1645del	p.His548GlnfsTer46	p.H548Qfs*46	ENST00000329236	NM_001204466.1	548	cAT/c																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0028699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	37	673	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242487	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATCTC	AATTAAGAGAAGCAACATCTC	TCT			P-0028699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	26	595	2	ENST00000275493.2:c.2237_2257delinsTCT	p.Glu746_Pro753delinsValSer	p.E746_P753delinsVS	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCTCcg/gTCTcg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156834552	156834552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	76	747	1	ENST00000524377.1:c.320C>T	p.Ala107Val	p.A107V	ENST00000524377	NM_002529.3	107	gCg/gTg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455097	50455097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	57	434	0	ENST00000331340.3:c.644C>T	p.Ser215Phe	p.S215F	ENST00000331340	NM_006060.4	215	tCt/tTt																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	54	333	1	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	28	278	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276755	15276755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138265894		P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	80	748	0	ENST00000263388.2:c.5510G>A	p.Arg1837His	p.R1837H	ENST00000263388	NM_000435.2	1837	cGt/cAt																																																																															
HRAS	3265	MSKCC	GRCh37	11	534289	534289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894229		P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	24	518	1	ENST00000311189.7:c.34G>A	p.Gly12Ser	p.G12S	ENST00000311189		12	Ggc/Agc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979563	7979563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	76	570	0	ENST00000319144.4:c.1462C>T	p.Arg488Cys	p.R488C	ENST00000319144	NM_001139.2	488	Cgt/Tgt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138570	2138570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	67	587	2	ENST00000219476.3:c.5383C>T	p.Arg1795Cys	p.R1795C	ENST00000219476	NM_000548.3	1795	Cgc/Tgc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662224	227662224	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	77	734	2	ENST00000305123.5:c.1231C>T	p.Arg411Ter	p.R411*	ENST00000305123	NM_005544.2	411	Cga/Tga																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204842	128204842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	70	787	2	ENST00000341105.2:c.599del	p.Gly200ValfsTer18	p.G200Vfs*18	ENST00000341105	NM_032638.4	200	gGt/gt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467699	50467699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	66	669	1	ENST00000331340.3:c.934G>A	p.Asp312Asn	p.D312N	ENST00000331340	NM_006060.4	312	Gac/Aac																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317422	1317422	+	downstream_gene_variant	3'Flank	SNP	G	G	A			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	58	489	0				ENST00000381566																																																																																		
ICOSLG	23308	MSKCC	GRCh37	21	45651264	45651264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	90	607	0	ENST00000407780.3:c.761C>T	p.Ala254Val	p.A254V	ENST00000407780	NM_001283052.1	254	gCg/gTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202149917	202149917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	45	609	3	ENST00000358485.4:c.1358C>T	p.Pro453Leu	p.P453L	ENST00000358485	NM_001080125.1	453	cCg/cTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411291	63411291	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	67	387	0	ENST00000330258.3:c.1876C>T	p.Arg626Ter	p.R626*	ENST00000330258	NM_152424.3	626	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820602	3820602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	78	682	0	ENST00000262367.5:c.2849C>T	p.Thr950Met	p.T950M	ENST00000262367	NM_004380.2	950	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	39	303	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954273	32954273	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	47	397	0	ENST00000380152.3:c.9253delA	p.Thr3085GlnfsTer19	p.T3085Qfs*19	ENST00000380152		3083	Aaa/aa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176666775	176666775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	53	457	0	ENST00000439151.2:c.4211G>A	p.Arg1404His	p.R1404H	ENST00000439151	NM_022455.4	1404	cGt/cAt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	38	284	1	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874197	155874197	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375724784		P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	78	667	0	ENST00000368323.3:c.334C>T	p.Arg112Cys	p.R112C	ENST00000368323	NM_006912.5	112	Cgt/Tgt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119780	70119781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	63	627	0	ENST00000245479.2:c.788dupG	p.Arg264GlnfsTer32	p.R264Qfs*32	ENST00000245479	NM_000346.3	261	gag/gaGg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	77	826	3	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145611	11145611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	67	591	2	ENST00000344626.4:c.3973C>T	p.Arg1325Cys	p.R1325C	ENST00000344626	NM_003072.3	1325	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	187	754	0	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428327	33428327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	64	552	0	ENST00000335858.7:c.460C>T	p.Arg154Cys	p.R154C	ENST00000335858	NM_133629.2	154	Cgc/Tgc																																																																															
BCL6	604	MSKCC	GRCh37	3	187444543	187444543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	54	495	0	ENST00000232014.4:c.1684G>A	p.Ala562Thr	p.A562T	ENST00000232014	NM_001130845.1	562	Gcc/Acc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43733757	43733757	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	63	408	0	ENST00000382044.4:c.3065del	p.Asn1022MetfsTer20	p.N1022Mfs*20	ENST00000382044	NM_001141980.1	1022	aAt/at																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984559	72984559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	69	675	0	ENST00000268489.5:c.3025G>A	p.Val1009Met	p.V1009M	ENST00000268489	NM_006885.3	1009	Gtg/Atg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41197783	41197783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	93	579	0	ENST00000357654.3:c.5504G>A	p.Arg1835Gln	p.R1835Q	ENST00000357654	NM_007294.3	1835	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112174213	112174214	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	36	405	0	ENST00000257430.4:c.2926dup	p.Arg976LysfsTer9	p.R976Kfs*9	ENST00000257430	NM_000038.5	974	-/A																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62324513	62324513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	117	743	0	ENST00000508582.2:c.2941C>T	p.Arg981Trp	p.R981W	ENST00000508582		981	Cgg/Tgg																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182662919	182662919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	57	551	1	ENST00000292782.4:c.743G>A	p.Arg248His	p.R248H	ENST00000292782	NM_020640.2	248	cGc/cAc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260103	19260103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	84	676	0	ENST00000162023.5:c.190C>T	p.Arg64Cys	p.R64C	ENST00000162023		64	Cgt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260447	16260447	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	30	476	0	ENST00000375759.3:c.7715del	p.Pro2572ArgfsTer11	p.P2572Rfs*11	ENST00000375759	NM_015001.2	2571	gCc/gc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088655	27088655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	80	738	1	ENST00000324856.7:c.2264G>T	p.Arg755Met	p.R755M	ENST00000324856	NM_006015.4	755	aGg/aTg																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46546330	46546330	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	47	389	0	ENST00000262741.5:c.199T>C	p.Trp67Arg	p.W67R	ENST00000262741	NM_003629.3	67	Tgg/Cgg																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439919	51439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	18	236	0	ENST00000262662.1:c.488del	p.Gly163GlufsTer24	p.G163Efs*24	ENST00000262662		162	Ggg/gg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65332824	65332824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773295622		P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	47	352	0	ENST00000342505.4:c.715C>T	p.Arg239Trp	p.R239W	ENST00000342505	NM_002227.2	239	Cgg/Tgg																																																																															
PARP1	142	MSKCC	GRCh37	1	226566919	226566919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	58	486	0	ENST00000366794.5:c.1669del	p.Gly558AlafsTer38	p.G558Afs*38	ENST00000366794	NM_001618.3	557	Ctt/tt																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612975	228612975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	42	377	0	ENST00000366696.1:c.52C>T	p.Arg18Cys	p.R18C	ENST00000366696	NM_003493.2	18	Cgc/Tgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692783	89692783	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	44	410	0	ENST00000371953.3:c.270delT	p.Phe90LeufsTer9	p.F90Lfs*9	ENST00000371953	NM_000314.4	89	ccT/cc																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154869	2154869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	86	741	1	ENST00000434045.2:c.352C>T	p.Arg118Cys	p.R118C	ENST00000434045	NM_001127598.1	118	Cgc/Tgc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77047243	77047243	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	47	532	0	ENST00000356341.3:c.1301A>G	p.Glu434Gly	p.E434G	ENST00000356341	NM_002576.4	434	gAg/gGg																																																																															
RAD52	5893	MSKCC	GRCh37	12	1023135	1023135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	37	546	1	ENST00000358495.3:c.1120G>A	p.Val374Ile	p.V374I	ENST00000358495	NM_134424.2	374	Gtt/Att																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420732	49420732	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	61	561	0	ENST00000301067.7:c.15017A>C	p.Glu5006Ala	p.E5006A	ENST00000301067	NM_003482.3	5006	gAg/gCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437555	49437557	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	54	551	0	ENST00000301067.7:c.5328_5330del	p.Phe1777del	p.F1777del	ENST00000301067	NM_003482.3	1776	ttCTTt/ttt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112283	115112283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	24	173	0	ENST00000257566.3:c.1457C>T	p.Thr486Met	p.T486M	ENST00000257566	NM_016569.3	486	aCg/aTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28896972	28896972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	39	435	0	ENST00000282397.4:c.2908G>A	p.Gly970Ser	p.G970S	ENST00000282397	NM_002019.4	970	Ggc/Agc																																																																															
AKT1	207	MSKCC	GRCh37	14	105242059	105242059	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746934495		P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	81	691	0	ENST00000349310.3:c.365C>T	p.Ser122Leu	p.S122L	ENST00000349310	NM_001014432.1	122	tCg/tTg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99482559	99482559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	51	495	0	ENST00000268035.6:c.3427G>T	p.Val1143Leu	p.V1143L	ENST00000268035	NM_000875.3	1143	Gta/Tta																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820668	3820668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	110	796	1	ENST00000262367.5:c.2783C>T	p.Pro928Leu	p.P928L	ENST00000262367	NM_004380.2	928	cCg/cTg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23635330	23635330	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	70	607	0	ENST00000261584.4:c.2834G>A	p.Arg945Lys	p.R945K	ENST00000261584	NM_024675.3	945	aGg/aAg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969947	81969947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	52	492	0	ENST00000359376.3:c.3016G>A	p.Gly1006Ser	p.G1006S	ENST00000359376	NM_002661.3	1006	Ggt/Agt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37681003	37681003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	63	500	0	ENST00000447079.4:c.3172G>A	p.Glu1058Lys	p.E1058K	ENST00000447079	NM_015083.1	1058	Gaa/Aaa																																																																															
RARA	5914	MSKCC	GRCh37	17	38512369	38512370	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	37	635	0	ENST00000254066.5:c.1286dup	p.Gly430TrpfsTer16	p.G430Wfs*16	ENST00000254066	NM_000964.3	427	ccg/ccGg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10264989	10264989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	32	380	1	ENST00000340748.4:c.1951C>T	p.Arg651Trp	p.R651W	ENST00000340748		651	Cgg/Tgg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296304	15296304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	64	680	0	ENST00000263388.2:c.2138C>A	p.Pro713His	p.P713H	ENST00000263388	NM_000435.2	713	cCt/cAt																																																																															
AXL	558	MSKCC	GRCh37	19	41737112	41737112	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	51	765	0	ENST00000301178.4:c.692T>G	p.Leu231Arg	p.L231R	ENST00000301178	NM_021913.4	231	cTc/cGc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867053	45867053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	48	586	1	ENST00000391945.4:c.1066G>A	p.Ala356Thr	p.A356T	ENST00000391945	NM_000400.3	356	Gcc/Acc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637396	47637396	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	67	574	0	ENST00000233146.2:c.531del	p.Glu177AspfsTer37	p.E177Dfs*37	ENST00000233146	NM_000251.2	177	gAa/ga																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198257847	198257847	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	66	490	0	ENST00000335508.6:c.3605T>C	p.Phe1202Ser	p.F1202S	ENST00000335508	NM_012433.2	1202	tTt/tCt																																																																															
BARD1	580	MSKCC	GRCh37	2	215657162	215657162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	29	237	0	ENST00000260947.4:c.223G>A	p.Val75Ile	p.V75I	ENST00000260947	NM_000465.2	75	Gta/Ata																																																																															
CUL3	8452	MSKCC	GRCh37	2	225379425	225379425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	66	597	1	ENST00000264414.4:c.443G>A	p.Arg148Gln	p.R148Q	ENST00000264414	NM_003590.4	148	cGa/cAa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017790	31017790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	66	559	0	ENST00000375687.4:c.652C>T	p.Arg218Cys	p.R218C	ENST00000375687	NM_015338.5	218	Cgt/Tgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419863	41419863	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	55	542	0	ENST00000373198.4:c.458T>C	p.Ile153Thr	p.I153T	ENST00000373198	NM_133170.3	153	aTc/aCc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62319048	62319048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	94	741	1	ENST00000508582.2:c.1478G>A	p.Arg493His	p.R493H	ENST00000508582		493	cGc/cAc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42879925	42879925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	44	209	0	ENST00000398585.3:c.7C>T	p.Pro3Ser	p.P3S	ENST00000398585	NM_001135099.1	3	Cct/Tct																																																																															
BAP1	8314	MSKCC	GRCh37	3	52438586	52438586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	41	367	0	ENST00000460680.1:c.1133C>T	p.Ala378Val	p.A378V	ENST00000460680	NM_004656.3	378	gCg/gTg																																																																															
ATR	545	MSKCC	GRCh37	3	142177876	142177876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	44	558	0	ENST00000350721.4:c.7427G>A	p.Arg2476His	p.R2476H	ENST00000350721	NM_001184.3	2476	cGt/cAt																																																																															
ATR	545	MSKCC	GRCh37	3	142238584	142238584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	40	281	0	ENST00000350721.4:c.4309G>A	p.Gly1437Ser	p.G1437S	ENST00000350721	NM_001184.3	1437	Ggc/Agc																																																																															
TP63	8626	MSKCC	GRCh37	3	189612243	189612243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	39	397	0	ENST00000264731.3:c.1995G>T	p.Met665Ile	p.M665I	ENST00000264731	NM_003722.4	665	atG/atT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509115	66509115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	29	414	0	ENST00000273854.3:c.212G>A	p.Gly71Glu	p.G71E	ENST00000273854	NM_004439.5	71	gGg/gAg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500479	149500479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	72	595	0	ENST00000261799.4:c.2558G>A	p.Arg853Gln	p.R853Q	ENST00000261799	NM_002609.3	853	cGg/cAg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638455	176638455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	86	678	0	ENST00000439151.2:c.3055C>T	p.Arg1019Cys	p.R1019C	ENST00000439151	NM_022455.4	1019	Cgc/Tgc																																																																															
FYN	2534	MSKCC	GRCh37	6	111983060	111983060	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	58	592	0	ENST00000368678.4:c.1487T>C	p.Met496Thr	p.M496T	ENST00000368678		496	aTg/aCg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129337	152129338	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	50	471	2	ENST00000206249.3:c.296dupC	p.Leu100ThrfsTer57	p.L100Tfs*57	ENST00000206249	NM_000125.3	97	ttc/ttCc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527742	157527742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	63	478	0	ENST00000346085.5:c.5467G>A	p.Gly1823Arg	p.G1823R	ENST00000346085	NM_020732.3	1823	Ggg/Agg																																																																															
MED12	9968	MSKCC	GRCh37	X	70343444	70343444	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	14	239	2	ENST00000374080.3:c.1618C>T	p.Arg540Cys	p.R540C	ENST00000374080		540	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	190	497	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786204041		P-0028708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	208	781	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244401	46244401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	149	637	0	ENST00000334344.6:c.2495C>T	p.Ser832Leu	p.S832L	ENST00000334344	NM_152641.2	832	tCa/tTa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974683	21974684	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0028708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	263	483	0	ENST00000304494.5:c.142_143dup	p.Ile49ArgfsTer5	p.I49Rfs*5	ENST00000304494	NM_000077.4	48	ccg/ccCCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	80	546	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	71	247	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593466	48593466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	92	371	0	ENST00000342988.3:c.1217C>T	p.Ala406Val	p.A406V	ENST00000342988	NM_005359.5	406	gCg/gTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916644	178916644	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	85	421	0	ENST00000263967.3:c.31T>G	p.Trp11Gly	p.W11G	ENST00000263967	NM_006218.2	11	Tgg/Ggg																																																																															
APC	324	MSKCC	GRCh37	5	112175251	112175255	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCG	GAGCG	-			P-0028710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	66	246	0	ENST00000257430.4:c.3960_3964del	p.Glu1322SerfsTer8	p.E1322Sfs*8	ENST00000257430	NM_000038.5	1320	gtGAGCGaa/gtaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0028720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	148	576	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	136	548	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760836	59760836	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	146	534	0	ENST00000259008.2:c.3571A>G	p.Ile1191Val	p.I1191V	ENST00000259008	NM_032043.2	1191	Ata/Gta																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0028722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	62	383	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
JAK3	3718	MSKCC	GRCh37	19	17950393	17950393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	155	626	1	ENST00000458235.1:c.1334G>A	p.Arg445Gln	p.R445Q	ENST00000458235	NM_000215.3	445	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	325	589	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168682	32168682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	333	598	0	ENST00000375023.3:c.4241C>T	p.Ala1414Val	p.A1414V	ENST00000375023	NM_004557.3	1414	gCg/gTg																																																																															
ATM	472	MSKCC	GRCh37	11	108099978	108099978	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	147	307	0	ENST00000278616.4:c.259C>T	p.Gln87Ter	p.Q87*	ENST00000278616	NM_000051.3	87	Caa/Taa																																																																															
AXL	558	MSKCC	GRCh37	19	41727899	41727899	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	294	668	0	ENST00000301178.4:c.524A>C	p.Gln175Pro	p.Q175P	ENST00000301178	NM_021913.4	175	cAg/cCg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	151	557	0	ENST00000347630.2:c.397T>C	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	Ttc/Ctc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	225	294	0	ENST00000349496.5:c.95A>C	p.Asp32Ala	p.D32A	ENST00000349496	NM_001904.3	32	gAc/gCc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969369	44969369	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	75	240	0	ENST00000377967.4:c.4051C>T	p.Arg1351Ter	p.R1351*	ENST00000377967	NM_021140.2	1351	Cga/Tga																																																																															
TET1	80312	MSKCC	GRCh37	10	70451223	70451223	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	133	568	0	ENST00000373644.4:c.6063G>C	p.Glu2021Asp	p.E2021D	ENST00000373644	NM_030625.2	2021	gaG/gaC																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164723	36164724	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGC			P-0028741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	41	643	0	ENST00000300305.3:c.1149_1151dup	p.Pro384dup	p.P384dup	ENST00000300305		384	ccc/ccGCCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0028744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	78	427	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0028744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	51	556	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	92	664	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205070	128205070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	80	660	1	ENST00000341105.2:c.371C>T	p.Thr124Met	p.T124M	ENST00000341105	NM_032638.4	124	aCg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836833	151836841	+	inframe_deletion	In_Frame_Del	DEL	ATGGTGTGT	ATGGTGTGT	-			P-0028744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	40	518	0	ENST00000262189.6:c.14379_14387del	p.His4794_Met4796del	p.H4794_M4796del	ENST00000262189	NM_170606.2	4793	aaACACACCATg/aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11129631	11129631	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0028745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	107	551	0	ENST00000344626.4:c.2439-2A>G		p.X813_splice	ENST00000344626	NM_003072.3	813																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0028751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	187	543	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692887	89692887	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660535		P-0028751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	303	263	0	ENST00000371953.3:c.371G>A	p.Cys124Tyr	p.C124Y	ENST00000371953	NM_000314.4	124	tGt/tAt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185161405	185161405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	134	387	0	ENST00000265026.3:c.832C>T	p.Arg278Cys	p.R278C	ENST00000265026	NM_004721.4	278	Cgt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432095	49432095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	369	574	0	ENST00000301067.7:c.9044G>A	p.Gly3015Asp	p.G3015D	ENST00000301067	NM_003482.3	3015	gGt/gAt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974740	15974740	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	113	360	0	ENST00000268712.3:c.4135G>C	p.Glu1379Gln	p.E1379Q	ENST00000268712	NM_006311.3	1379	Gag/Cag																																																																															
TEK	7010	MSKCC	GRCh37	9	27157838	27157838	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	113	366	0	ENST00000380036.4:c.62A>G	p.Glu21Gly	p.E21G	ENST00000380036	NM_000459.3	21	gAa/gGa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52595880	52595881	+	frameshift_variant	Frame_Shift_Ins	INS	AA	AA	CAG			P-0028751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	166	527	0	ENST00000394830.3:c.4034_4035delinsCTG	p.Ile1345ThrfsTer25	p.I1345Tfs*25	ENST00000394830	NM_018313.4	1345	aTT/aCTG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	492	532	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	221	413	3	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932136	36932136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	184	524	0	ENST00000361632.4:c.2333C>T	p.Ala778Val	p.A778V	ENST00000361632		778	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576991	7577353	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCACCGCTTCTTGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGGGCAGCTCGTGGTGAGGCTCCCCTTTCTTGCGGAGATTCTCTTCCTCTGTGCGCCGGTCTCTCCCAGGACAGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCACTACTCAGGATAGGAAAAGAGAAGCAAGAGGCAGTAAGGAAATCAGGTCCTACCTGTCCCATTTAAAAAACCAGGCTCCATCTACTCCCAACCACCCTTGTCCTTTCTGGAGCCTAAGCTCCAGCTCCAGGTAGGTGGAGGAGAAGCCACAGGTTAAGAGGTCCCAAAGCCAGAGAAAAGAAAACTGAGTGGGAGCAG	TCCACCGCTTCTTGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGGGCAGCTCGTGGTGAGGCTCCCCTTTCTTGCGGAGATTCTCTTCCTCTGTGCGCCGGTCTCTCCCAGGACAGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCACTACTCAGGATAGGAAAAGAGAAGCAAGAGGCAGTAAGGAAATCAGGTCCTACCTGTCCCATTTAAAAAACCAGGCTCCATCTACTCCCAACCACCCTTGTCCTTTCTGGAGCCTAAGCTCCAGCTCCAGGTAGGTGGAGGAGAAGCCACAGGTTAAGAGGTCCCAAAGCCAGAGAAAAGAAAACTGAGTGGGAGCAG	-			P-0028754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	248	536	2	ENST00000269305.4:c.782+146_919+28del		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
XPO1	7514	MSKCC	GRCh37	2	61710126	61710126	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	50	428	0	ENST00000401558.2:c.2778C>G	p.Ile926Met	p.I926M	ENST00000401558	NM_003400.3	926	atC/atG																																																																															
APC	324	MSKCC	GRCh37	5	112175828	112175829	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0028754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	121	298	3	ENST00000257430.4:c.4538_4539del	p.Glu1513AlafsTer19	p.E1513Afs*19	ENST00000257430	NM_000038.5	1513	GAg/g																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0028755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	115	488	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	112	406	0	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259153	36259153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	116	567	0	ENST00000300305.3:c.338C>T	p.Pro113Leu	p.P113L	ENST00000300305		113	cCc/cTc																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14380349	14380349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	38	295	0	ENST00000256196.4:c.68G>A	p.Gly23Asp	p.G23D	ENST00000256196		23	gGc/gAc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252862	36252862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	90	325	0	ENST00000300305.3:c.500G>A	p.Ser167Asn	p.S167N	ENST00000300305		167	aGt/aAt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183342	56183342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	92	348	0	ENST00000399503.3:c.4252C>T	p.Pro1418Ser	p.P1418S	ENST00000399503	NM_005921.1	1418	Cct/Tct																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878416	151878416	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	130	681	1	ENST00000262189.6:c.6529C>T	p.Gln2177Ter	p.Q2177*	ENST00000262189	NM_170606.2	2177	Cag/Tag																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577479	64577479	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	183	574	1	ENST00000337652.1:c.103del	p.Val35CysfsTer84	p.V35Cfs*84	ENST00000337652	NM_130803.2	35	Gtg/tg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138403632	138403632	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs74701669		P-0028784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	319	443	0	ENST00000289153.2:c.2150A>G	p.Asn717Ser	p.N717S	ENST00000289153	NM_006219.2	717	aAt/aGt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16012100	16012100	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0028784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	317	430	0	ENST00000268712.3:c.2182G>C	p.Val728Leu	p.V728L	ENST00000268712	NM_006311.3	728	Gtt/Ctt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0028791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	246	489	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29556367	29556367	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	172	617	0	ENST00000358273.4:c.2734C>T	p.Gln912Ter	p.Q912*	ENST00000358273	NM_001042492.2	912	Caa/Taa																																																																															
MGA	23269	MSKCC	GRCh37	15	42052639	42052639	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	144	607	2	ENST00000219905.7:c.7310G>T	p.Gly2437Val	p.G2437V	ENST00000219905	NM_001164273.1	2437	gGt/gTt																																																																															
CDH1	999	MSKCC	GRCh37	16	68835604	68835622	+	frameshift_variant	Frame_Shift_Del	DEL	GACAGCCTATTTTTCCCTC	GACAGCCTATTTTTCCCTC	-			P-0028791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	118	660	0	ENST00000261769.5:c.199_217del	p.Ala67ProfsTer10	p.A67Pfs*10	ENST00000261769	NM_004360.3	65	agGACAGCCTATTTTTCCCTC/ag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18961568	18961569	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGACC			P-0028791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	146	616	1	ENST00000262803.5:c.703_707dup	p.Cys237ThrfsTer86	p.C237Tfs*86	ENST00000262803	NM_002911.3	234	cag/caGGACCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0028803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	391	735	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	230	608	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175606	112175606	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	239	465	0	ENST00000257430.4:c.4316del	p.Pro1439LeufsTer34	p.P1439Lfs*34	ENST00000257430	NM_000038.5	1439	Cct/ct																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374914	45374914	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	356	593	0	ENST00000262160.6:c.929G>C	p.Arg310Thr	p.R310T	ENST00000262160	NM_005901.5	310	aGg/aCg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119971	70119971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	183	336	1	ENST00000245479.2:c.973G>A	p.Ala325Thr	p.A325T	ENST00000245479	NM_000346.3	325	Gcg/Acg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206652291	206652291	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	314	554	0	ENST00000367120.3:c.998C>G	p.Ala333Gly	p.A333G	ENST00000367120	NM_014002.3	333	gCc/gGc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213485	36213485	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1284	523	1032	0	ENST00000222270.7:c.2587G>T	p.Val863Leu	p.V863L	ENST00000222270	NM_014727.1	863	Gtg/Ttg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437441	52437441	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	59	413	0	ENST00000460680.1:c.1720G>T	p.Ala574Ser	p.A574S	ENST00000460680	NM_004656.3	574	Gcg/Tcg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266110	41266110	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	79	309	0	ENST00000349496.5:c.107A>C	p.His36Pro	p.H36P	ENST00000349496	NM_001904.3	36	cAt/cCt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857974	9857974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61758996		P-0028835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	119	438	1	ENST00000330684.3:c.3427G>A	p.Glu1143Lys	p.E1143K	ENST00000330684	NM_001134407.1	1143	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242447	55242461	+	inframe_deletion	In_Frame_Del	DEL	AATTCCCGTCGCTAT	AATTCCCGTCGCTAT	-			P-0028838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	7	515	0	ENST00000275493.2:c.2217_2231del	p.Lys739_Ile744delinsAsn	p.K739_I744delinsN	ENST00000275493	NM_005228.3	739	aaAATTCCCGTCGCTATc/aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	163	435	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484302	8484302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	101	464	0	ENST00000356435.5:c.3230C>A	p.Pro1077His	p.P1077H	ENST00000356435		1077	cCt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089725	27089725	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	50	615	0	ENST00000324856.7:c.2681C>G	p.Thr894Ser	p.T894S	ENST00000324856	NM_006015.4	894	aCc/aGc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112268	115112268	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	22	77	0	ENST00000257566.3:c.1472C>G	p.Ala491Gly	p.A491G	ENST00000257566	NM_016569.3	491	gCg/gGg																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675139	40675139	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	199	735	0	ENST00000249776.8:c.103C>G	p.Leu35Val	p.L35V	ENST00000249776	NM_033286.3	35	Cta/Gta																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476259	88476259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	110	525	0	ENST00000360948.2:c.1873C>A	p.Leu625Met	p.L625M	ENST00000360948	NM_001012338.2	625	Ctg/Atg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584465	187584465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	24	302	1	ENST00000441802.2:c.3568C>T	p.His1190Tyr	p.H1190Y	ENST00000441802	NM_005245.3	1190	Cat/Tat																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562505	176562505	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	115	648	0	ENST00000439151.2:c.401A>G	p.Asn134Ser	p.N134S	ENST00000439151	NM_022455.4	134	aAc/aGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115961	8115961	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	173	314	0	ENST00000346208.3:c.1308del	p.Ser437AlafsTer38	p.S437Afs*38	ENST00000346208		436	tCc/tc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061266	38061268	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0028843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	435	809	0	ENST00000250448.2:c.721_723del	p.Gly241del	p.G241del	ENST00000250448	NM_004496.3	241	GGC/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0028847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			591	238	386	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0028864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	322	619	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0028864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	182	401	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0028864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	431	734	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0028864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	38	380	1	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604703	48604703	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	202	424	0	ENST00000342988.3:c.1525T>C	p.Trp509Arg	p.W509R	ENST00000342988	NM_005359.5	509	Tgg/Cgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32944659	32944659	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	201	504	0	ENST00000380152.3:c.8452G>T	p.Val2818Phe	p.V2818F	ENST00000380152		2818	Gtt/Ttt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265886	41266210	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGA	TTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGA	-			P-0028864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7	74	13	0	ENST00000349496.5:c.14-125_213del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	50	439	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0028869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	139	512	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
TP63	8626	MSKCC	GRCh37	3	189612078	189612078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	120	505	0	ENST00000264731.3:c.1830C>A	p.Phe610Leu	p.F610L	ENST00000264731	NM_003722.4	610	ttC/ttA																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073852	8073852	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	56	193	0	ENST00000377482.5:c.807A>G	p.Ile269Met	p.I269M	ENST00000377482	NM_018948.3	269	atA/atG																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2213957	2213957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	71	538	3	ENST00000398665.3:c.1769G>A	p.Arg590His	p.R590H	ENST00000398665	NM_032482.2	590	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	69	385	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226187	53226187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	99	255	1	ENST00000375401.3:c.2662C>T	p.Arg888Cys	p.R888C	ENST00000375401	NM_004187.3	888	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	90	535	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858032	9858032	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	69	437	0	ENST00000330684.3:c.3369G>T	p.Glu1123Asp	p.E1123D	ENST00000330684	NM_001134407.1	1123	gaG/gaT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971207	21971207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0028870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	39	317	0	ENST00000304494.5:c.151G>T	p.Val51Phe	p.V51F	ENST00000304494	NM_000077.4	51	Gtc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	104	397	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579584	7579585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	127	511	0	ENST00000269305.4:c.102dupC	p.Pro36AlafsTer7	p.P36Afs*7	ENST00000269305	NM_001126112.2	34	-/C																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521619	89521619	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	51	306	0	ENST00000336596.2:c.2696C>A	p.Ser899Ter	p.S899*	ENST00000336596	NM_005233.5	899	tCa/tAa																																																																															
EZH2	2146	MSKCC	GRCh37	7	148514360	148514379	+	frameshift_variant	Frame_Shift_Del	DEL	TTGTCATAGTAAGTGCCAAT	TTGTCATAGTAAGTGCCAAT	AGCGCCAAG			P-0028875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	68	419	2	ENST00000320356.2:c.1345_1364delinsCTTGGCGCT	p.Ile449LeufsTer9	p.I449Lfs*9	ENST00000320356	NM_004456.4	449	ATTGGCACTTACTATGACAAt/CTTGGCGCTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0028878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	86	443	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603148	48603148	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0028878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	63	332	0	ENST00000342988.3:c.1447+2T>C		p.X483_splice	ENST00000342988	NM_005359.5	483																																																																																
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0028879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	245	613	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0028879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	67	338	1	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149457763	149457763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	120	570	1	ENST00000286301.3:c.641G>A	p.Arg214Gln	p.R214Q	ENST00000286301	NM_005211.3	214	cGg/cAg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12641686	12641686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	88	396	0	ENST00000251849.4:c.955G>A	p.Ala319Thr	p.A319T	ENST00000251849	NM_002880.3	319	Gca/Aca																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46527629	46527629	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0028879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	49	410	0	ENST00000262741.5:c.736A>T	p.Arg246Ter	p.R246*	ENST00000262741	NM_003629.3	246	Aga/Tga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120461958	120461958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	45	338	0	ENST00000256646.2:c.5758G>A	p.Ala1920Thr	p.A1920T	ENST00000256646	NM_024408.3	1920	Gct/Act																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307643	118307643	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	51	474	0	ENST00000534358.1:c.416G>C	p.Gly139Ala	p.G139A	ENST00000534358	NM_005933.3	139	gGa/gCa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28908249	28908249	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	177	448	0	ENST00000282397.4:c.2506G>C	p.Gly836Arg	p.G836R	ENST00000282397	NM_002019.4	836	Ggg/Cgg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351127	89351127	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	64	460	0	ENST00000301030.4:c.1823A>G	p.Lys608Arg	p.K608R	ENST00000301030	NM_001256183.1	608	aAg/aGg																																																																															
TP63	8626	MSKCC	GRCh37	3	189612239	189612239	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	93	381	0	ENST00000264731.3:c.1991A>T	p.Asp664Val	p.D664V	ENST00000264731	NM_003722.4	664	gAc/gTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294299	1294299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	52	333	0	ENST00000310581.5:c.702G>T	p.Leu234Phe	p.L234F	ENST00000310581	NM_198253.2	234	ttG/ttT																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455142	50455142	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	64	288	0	ENST00000331340.3:c.689T>A	p.Met230Lys	p.M230K	ENST00000331340	NM_006060.4	230	aTg/aAg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772973	135772974	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0028885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	38	343	0	ENST00000298552.3:c.2649_2650del	p.Tyr884SerfsTer19	p.Y884Sfs*19	ENST00000298552	NM_001162426.1	883	gcCTat/gcat																																																																															
JUN	3725	MSKCC	GRCh37	1	59248633	59248634	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0028886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	243	714	0	ENST00000371222.2:c.109_110delAG	p.Ser37HisfsTer69	p.S37Hfs*69	ENST00000371222	NM_002228.3	37	AGc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	248	562	0	ENST00000269305.4:c.773A>G	p.Glu258Gly	p.E258G	ENST00000269305	NM_001126112.2	258	gAa/gGa																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858279	27858279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	78	555	0	ENST00000359303.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000359303	NM_003535.2	98	Gag/Aag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748891	43748891	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	134	742	1	ENST00000382044.4:c.1915C>T	p.Arg639Ter	p.R639*	ENST00000382044	NM_001141980.1	639	Cga/Tga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678559	88678559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	49	378	1	ENST00000360948.2:c.977G>A	p.Arg326His	p.R326H	ENST00000360948	NM_001012338.2	326	cGt/cAt																																																																															
ACVR1	90	MSKCC	GRCh37	2	158634744	158634744	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	132	346	0	ENST00000263640.3:c.442A>G	p.Lys148Glu	p.K148E	ENST00000263640	NM_001105.4	148	Aaa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916942	178916956	+	inframe_deletion	In_Frame_Del	DEL	AAAAGATCCTCAATC	AAAAGATCCTCAATC	-			P-0028886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	129	461	0	ENST00000263967.3:c.329_343del	p.Glu110_Arg115delinsGly	p.E110_R115delinsG	ENST00000263967	NM_006218.2	110	gAAAAGATCCTCAATCga/gga																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870909	12870909	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	313	384	2	ENST00000228872.4:c.136G>T	p.Glu46Ter	p.E46*	ENST00000228872	NM_004064.3	46	Gag/Tag																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185184639	185184639	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	202	503	0	ENST00000265026.3:c.1531T>A	p.Tyr511Asn	p.Y511N	ENST00000265026	NM_004721.4	511	Tat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	67	556	0	ENST00000269305.4:c.725G>C	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	tGc/tCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0028890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	79	490	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703631	47703631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	137	450	0	ENST00000233146.2:c.2131C>T	p.Arg711Ter	p.R711*	ENST00000233146	NM_000251.2	711	Cga/Tga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	107	507	2	ENST00000380152.3:c.5351delA	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	89	506	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	73	304	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	92	492	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	201	597	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	158	666	2	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56490980	56490980	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	134	588	0	ENST00000267101.3:c.2426A>G	p.Gln809Arg	p.Q809R	ENST00000267101	NM_001982.3	809	cAg/cGg																																																																															
TET2	54790	MSKCC	GRCh37	4	106164902	106164902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	70	348	1	ENST00000380013.4:c.3770C>T	p.Thr1257Met	p.T1257M	ENST00000380013	NM_001127208.2	1257	aCg/aTg																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166607	118166607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	68	292	0	ENST00000369448.3:c.1117G>A	p.Val373Ile	p.V373I	ENST00000369448	NM_017709.3	373	Gtt/Att																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	34	647	1	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788617	3788617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	174	484	0	ENST00000262367.5:c.4337G>A	p.Arg1446His	p.R1446H	ENST00000262367	NM_004380.2	1446	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	103	708	1	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	216	757	1	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	69	323	1	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118918	70118918	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	184	729	0	ENST00000245479.2:c.490C>T	p.Gln164Ter	p.Q164*	ENST00000245479	NM_000346.3	164	Cag/Tag																																																																															
SUFU	51684	MSKCC	GRCh37	10	104353441	104353441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	167	662	2	ENST00000369902.3:c.646G>A	p.Gly216Arg	p.G216R	ENST00000369902	NM_016169.3	216	Ggg/Agg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	89	418	2	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467637	50467637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	65	415	1	ENST00000331340.3:c.872C>T	p.Thr291Met	p.T291M	ENST00000331340	NM_006060.4	291	aCg/aTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291083	10291084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755889652		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	155	602	1	ENST00000340748.4:c.387dup	p.Lys130GlnfsTer19	p.K130Qfs*19	ENST00000340748		129	-/C																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480459	89480459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	90	319	0	ENST00000336596.2:c.2296G>A	p.Gly766Arg	p.G766R	ENST00000336596	NM_005233.5	766	Gga/Aga																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742547	145742547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	108	652	0	ENST00000428558.2:c.241del	p.His81IlefsTer2	p.H81Ifs*2	ENST00000428558	NM_004260.3	81	Cat/at																																																																															
IRF4	3662	MSKCC	GRCh37	6	395910	395910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	94	468	0	ENST00000380956.4:c.467C>T	p.Thr156Met	p.T156M	ENST00000380956	NM_001195286.1	156	aCg/aTg																																																																															
B2M	567	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	73	247	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
ATR	545	MSKCC	GRCh37	3	142177928	142177928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	122	490	0	ENST00000350721.4:c.7375C>T	p.Arg2459Cys	p.R2459C	ENST00000350721	NM_001184.3	2459	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112177788	112177788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	68	416	0	ENST00000257430.4:c.6497G>A	p.Arg2166Gln	p.R2166Q	ENST00000257430	NM_000038.5	2166	cGa/cAa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905055	50905055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	108	516	3	ENST00000440232.2:c.342delG	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	113	Ggg/gg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26029193	26029195	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	100	406	0	ENST00000435504.4:c.155_157del	p.Pro52del	p.P52del	ENST00000435504		52	cCTCtt/ctt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5273456	5273456	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	155	667	0	ENST00000357368.4:c.376C>T	p.Arg126Ter	p.R126*	ENST00000357368	NM_002850.3	126	Cga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8733794	8733794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	118	559	1	ENST00000356435.5:c.50G>A	p.Arg17His	p.R17H	ENST00000356435		17	cGc/cAc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163554	32163554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	97	511	1	ENST00000375023.3:c.5672del	p.Gly1891AlafsTer13	p.G1891Afs*13	ENST00000375023	NM_004557.3	1891	gGc/gc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47656969	47656969	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	143	419	1	ENST00000233146.2:c.1165C>T	p.Arg389Ter	p.R389*	ENST00000233146	NM_000251.2	389	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437606	56437606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886926322		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	114	525	0	ENST00000407977.2:c.856C>T	p.Arg286Trp	p.R286W	ENST00000407977		286	Cgg/Tgg																																																																															
CD274	29126	MSKCC	GRCh37	9	5466787	5466787	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	64	222	0	ENST00000381577.3:c.813del	p.Lys271AsnfsTer44	p.K271Nfs*44	ENST00000381577	NM_014143.3	270	Aaa/aa																																																																															
RARA	5914	MSKCC	GRCh37	17	38510573	38510573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	29	540	0	ENST00000254066.5:c.827G>A	p.Arg276Gln	p.R276Q	ENST00000254066	NM_000964.3	276	cGg/cAg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98238356	98238356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	115	507	1	ENST00000331920.6:c.1688C>T	p.Ala563Val	p.A563V	ENST00000331920	NM_000264.3	563	gCg/gTg																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166139	118166139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	113	415	0	ENST00000369448.3:c.649G>A	p.Gly217Arg	p.G217R	ENST00000369448	NM_017709.3	217	Ggg/Agg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210740	2210740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	168	686	1	ENST00000398665.3:c.1237C>T	p.Arg413Cys	p.R413C	ENST00000398665	NM_032482.2	413	Cgc/Tgc																																																																															
CASP8	841	MSKCC	GRCh37	2	202151254	202151254	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	115	478	0	ENST00000358485.4:c.1557delG	p.Lys520AsnfsTer10	p.K520Nfs*10	ENST00000358485	NM_001080125.1	518	atG/at																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015040	37015040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	75	434	0	ENST00000358127.4:c.364C>T	p.Arg122Trp	p.R122W	ENST00000358127	NM_001280556.1	122	Cgg/Tgg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164862	36164862	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	199	744	0	ENST00000300305.3:c.1013C>T	p.Ala338Val	p.A338V	ENST00000300305		338	gCg/gTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28979946	28979946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	130	572	0	ENST00000282397.4:c.1522C>T	p.Arg508Cys	p.R508C	ENST00000282397	NM_002019.4	508	Cgc/Tgc																																																																															
KDR	3791	MSKCC	GRCh37	4	55964315	55964315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	66	367	0	ENST00000263923.4:c.2498G>A	p.Arg833Gln	p.R833Q	ENST00000263923	NM_002253.2	833	cGg/cAg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2952993	2952993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	148	719	0	ENST00000396946.4:c.2947G>A	p.Val983Met	p.V983M	ENST00000396946	NM_032415.4	983	Gtg/Atg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984839	11984839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	125	466	0	ENST00000353533.5:c.385G>A	p.Ala129Thr	p.A129T	ENST00000353533	NM_003010.3	129	Gca/Aca																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966551	36966551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	132	499	0	ENST00000358127.4:c.775G>A	p.Glu259Lys	p.E259K	ENST00000358127	NM_001280556.1	259	Gag/Aag																																																																															
AR	367	MSKCC	GRCh37	X	66905935	66905935	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1218564193		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	89	435	0	ENST00000374690.3:c.1852C>T	p.Arg618Trp	p.R618W	ENST00000374690	NM_000044.3	618	Cgg/Tgg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9776087	9776087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	143	632	1	ENST00000377346.4:c.551G>A	p.Arg184Gln	p.R184Q	ENST00000377346	NM_005026.3	184	cGg/cAg																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628529	90628529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	113	617	0	ENST00000330062.3:c.1058G>A	p.Arg353His	p.R353H	ENST00000330062	NM_002168.2	353	cGc/cAc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37673793	37673793	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	163	603	0	ENST00000447079.4:c.2947C>T	p.Arg983Ter	p.R983*	ENST00000447079	NM_015083.1	983	Cga/Tga																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	161	662	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937355	32937355	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	124	493	3	ENST00000380152.3:c.8021delA	p.Lys2674ArgfsTer2	p.K2674Rfs*2	ENST00000380152		2672	atA/at																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047888	180047888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	167	776	1	ENST00000261937.6:c.2287G>A	p.Val763Met	p.V763M	ENST00000261937	NM_182925.4	763	Gtg/Atg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599234	28599234	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	45	743	1	ENST00000253063.3:c.685delC	p.Gln229ArgfsTer18	p.Q229Rfs*18	ENST00000253063	NM_031459.4	227	gCc/gc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557912	21557912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	105	438	0	ENST00000382592.4:c.1933C>T	p.Arg645Trp	p.R645W	ENST00000382592	NM_014572.2	645	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	166	765	5	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																															
E2F3	1871	MSKCC	GRCh37	6	20481530	20481530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	85	340	0	ENST00000346618.3:c.599G>T	p.Gly200Val	p.G200V	ENST00000346618	NM_001949.4	200	gGg/gTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230605	46230605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	113	472	1	ENST00000334344.6:c.854G>A	p.Arg285Gln	p.R285Q	ENST00000334344	NM_152641.2	285	cGg/cAg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	149	694	9	ENST00000382891.5:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382891	NM_133335.3	1341	Ccc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447773	49447773	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	68	501	0	ENST00000301067.7:c.661del	p.Ala221LeufsTer40	p.A221Lfs*40	ENST00000301067	NM_003482.3	221	Gct/ct																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130306	11130306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	144	548	0	ENST00000344626.4:c.2545C>T	p.Arg849Trp	p.R849W	ENST00000344626	NM_003072.3	849	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578184	7578184	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146340390		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	177	679	0	ENST00000269305.4:c.665C>T	p.Pro222Leu	p.P222L	ENST00000269305	NM_001126112.2	222	cCg/cTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319934	8319934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	34	318	1	ENST00000356435.5:c.5567C>T	p.Thr1856Met	p.T1856M	ENST00000356435		1856	aCg/aTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448271	56448271	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	107	506	0	ENST00000407977.2:c.375+1G>A		p.X125_splice	ENST00000407977		125																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157528630	157528630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	160	657	0	ENST00000346085.5:c.6355G>A	p.Val2119Ile	p.V2119I	ENST00000346085	NM_020732.3	2119	Gtt/Att																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88676897	88676897	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	155	544	0	ENST00000372037.3:c.682C>T	p.Arg228Ter	p.R228*	ENST00000372037	NM_004329.2	228	Cga/Tga																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905543	50905543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	145	818	2	ENST00000440232.2:c.671G>A	p.Arg224His	p.R224H	ENST00000440232	NM_002691.3	224	cGc/cAc																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17384765	17384765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	166	744	0	ENST00000359435.4:c.397C>T	p.Arg133Trp	p.R133W	ENST00000359435	NM_001033549.1	133	Cgg/Tgg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39222520	39222520	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	138	477	1	ENST00000402219.2:c.3090delA	p.Lys1030AsnfsTer6	p.K1030Nfs*6	ENST00000402219	NM_005633.3	1030	aaA/aa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372287	55372288	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	98	470	0	ENST00000297316.4:c.983dup	p.Gly331ArgfsTer34	p.G331Rfs*34	ENST00000297316	NM_022454.3	326	cac/caCc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672317	86672317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	105	481	0	ENST00000274376.6:c.2119C>T	p.Arg707Cys	p.R707C	ENST00000274376	NM_002890.2	707	Cgt/Tgt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716301	52716301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	157	562	1	ENST00000322088.6:c.745C>T	p.Arg249Cys	p.R249C	ENST00000322088	NM_014225.5	249	Cgc/Tgc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022454	12022454	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753079378		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	168	802	1	ENST00000396373.4:c.560C>T	p.Thr187Met	p.T187M	ENST00000396373	NM_001987.4	187	aCg/aTg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141559360	141559360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	115	618	2	ENST00000220592.5:c.1441G>A	p.Ala481Thr	p.A481T	ENST00000220592	NM_012154.3	481	Gcc/Acc																																																																															
ERG	2078	MSKCC	GRCh37	21	39764303	39764303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	141	580	0	ENST00000288319.7:c.809C>T	p.Ser270Leu	p.S270L	ENST00000288319	NM_182918.3	270	tCg/tTg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489568	56489568	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	119	438	0	ENST00000267101.3:c.2033G>T	p.Arg678Met	p.R678M	ENST00000267101	NM_001982.3	678	aGg/aTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244068	5244068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	128	706	1	ENST00000357368.4:c.1414G>A	p.Val472Met	p.V472M	ENST00000357368	NM_002850.3	472	Gtg/Atg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128015228	128015228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	134	533	1	ENST00000285398.2:c.2293C>T	p.Arg765Trp	p.R765W	ENST00000285398	NM_000122.1	765	Cgg/Tgg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017790	31017790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	152	723	1	ENST00000375687.4:c.652C>T	p.Arg218Cys	p.R218C	ENST00000375687	NM_015338.5	218	Cgt/Tgt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777608	9777608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	139	593	0	ENST00000377346.4:c.944C>T	p.Ser315Phe	p.S315F	ENST00000377346	NM_005026.3	315	tCc/tTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258454	16258454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	144	628	0	ENST00000375759.3:c.5719G>A	p.Val1907Ile	p.V1907I	ENST00000375759	NM_015001.2	1907	Gtc/Atc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258928	16258928	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	177	776	0	ENST00000375759.3:c.6198del	p.Lys2066AsnfsTer20	p.K2066Nfs*20	ENST00000375759	NM_015001.2	2065	Aaa/aa																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798843	45798843	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	124	601	0	ENST00000372115.3:c.347-1G>A		p.X116_splice	ENST00000372115	NM_001048171.1	116																																																																																
ARID5B	84159	MSKCC	GRCh37	10	63816920	63816920	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	70	272	0	ENST00000279873.7:c.891C>A	p.Asn297Lys	p.N297K	ENST00000279873	NM_032199.2	297	aaC/aaA																																																																															
SUFU	51684	MSKCC	GRCh37	10	104375095	104375095	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	133	552	0	ENST00000369902.3:c.1093C>T	p.Gln365Ter	p.Q365*	ENST00000369902	NM_016169.3	365	Cag/Tag																																																																															
HRAS	3265	MSKCC	GRCh37	11	533485	533485	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	162	664	0	ENST00000311189.7:c.418C>A	p.Pro140Thr	p.P140T	ENST00000311189		140	Ccc/Acc																																																																															
IGF2	3481	MSKCC	GRCh37	11	2161499	2161499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	138	529	0	ENST00000434045.2:c.28G>A	p.Val10Met	p.V10M	ENST00000434045	NM_001127598.1	10	Gtg/Atg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572637	64572637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	134	699	0	ENST00000337652.1:c.1234C>A	p.Pro412Thr	p.P412T	ENST00000337652	NM_130803.2	412	Cct/Act																																																																															
PGR	5241	MSKCC	GRCh37	11	100998316	100998316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	11	27	0	ENST00000325455.5:c.1486C>T	p.Pro496Ser	p.P496S	ENST00000325455	NM_001202474.3	496	Ccc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25368420	25368422	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	105	380	0	ENST00000256078.4:c.523_525del	p.Glu175del	p.E175del	ENST00000256078	NM_033360.2	175	GAA/-																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420420	49420420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	141	676	0	ENST00000301067.7:c.15329C>T	p.Pro5110Leu	p.P5110L	ENST00000301067	NM_003482.3	5110	cCc/cTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445499	49445500	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	116	807	0	ENST00000301067.7:c.1966dup	p.Leu656ProfsTer12	p.L656Pfs*12	ENST00000301067	NM_003482.3	656	ctg/cCtg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56486587	56486587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	135	592	0	ENST00000267101.3:c.1166C>T	p.Thr389Ile	p.T389I	ENST00000267101	NM_001982.3	389	aCa/aTa																																																																															
CDK4	1019	MSKCC	GRCh37	12	58143021	58143021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	129	684	0	ENST00000257904.6:c.763C>T	p.Arg255Cys	p.R255C	ENST00000257904	NM_000075.3	255	Cgc/Tgc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112924357	112924357	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1054802954		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	159	587	1	ENST00000351677.2:c.1303G>A	p.Val435Met	p.V435M	ENST00000351677	NM_002834.3	435	Gtg/Atg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608311	28608311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	148	576	0	ENST00000241453.7:c.1745C>T	p.Thr582Ile	p.T582I	ENST00000241453	NM_004119.2	582	aCc/aTc																																																																															
RB1	5925	MSKCC	GRCh37	13	48942724	48942725	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	84	327	0	ENST00000267163.4:c.1117_1118dup	p.Pro374LeufsTer7	p.P374Lfs*7	ENST00000267163	NM_000321.2	371	cca/cCAca																																																																															
RB1	5925	MSKCC	GRCh37	13	48951105	48951105	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	106	373	0	ENST00000267163.4:c.1267G>T	p.Gly423Ter	p.G423*	ENST00000267163	NM_000321.2	423	Gga/Tga																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396592	30396592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	72	251	2	ENST00000331968.5:c.127G>A	p.Ala43Thr	p.A43T	ENST00000331968	NM_002742.2	43	Gcg/Acg																																																																															
MGA	23269	MSKCC	GRCh37	15	42034989	42034989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	155	585	0	ENST00000219905.7:c.4831G>A	p.Ala1611Thr	p.A1611T	ENST00000219905	NM_001164273.1	1611	Gct/Act																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799218	88799219	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	87	617	0	ENST00000360948.2:c.166dup	p.Leu56ProfsTer82	p.L56Pfs*82	ENST00000360948	NM_001012338.2	56	ctc/cCtc																																																																															
BLM	641	MSKCC	GRCh37	15	91306294	91306294	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	117	393	0	ENST00000355112.3:c.1986del	p.Lys662AsnfsTer12	p.K662Nfs*12	ENST00000355112	NM_000057.2	661	Aaa/aa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121877	2121877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	119	740	0	ENST00000219476.3:c.2039G>A	p.Arg680Gln	p.R680Q	ENST00000219476	NM_000548.3	680	cGg/cAg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129119	2129119	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	159	725	0	ENST00000219476.3:c.3053T>C	p.Leu1018Pro	p.L1018P	ENST00000219476	NM_000548.3	1018	cTc/cCc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89352576	89352576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	119	405	0	ENST00000301030.4:c.763C>T	p.Arg255Trp	p.R255W	ENST00000301030	NM_001256183.1	255	Cgg/Tgg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40457661	40457661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	148	549	1	ENST00000345506.4:c.1414G>A	p.Gly472Ser	p.G472S	ENST00000345506	NM_003152.3	472	Ggc/Agc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78936750	78936750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	165	725	0	ENST00000306801.3:c.3832G>A	p.Ala1278Thr	p.A1278T	ENST00000306801	NM_020761.2	1278	Gcc/Acc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226875	2226875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	41	210	0	ENST00000398665.3:c.4355G>A	p.Gly1452Asp	p.G1452D	ENST00000398665	NM_032482.2	1452	gGc/gAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212221	5212221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	120	615	1	ENST00000357368.4:c.4810G>A	p.Ala1604Thr	p.A1604T	ENST00000357368	NM_002850.3	1604	Gcc/Acc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375495	15375495	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	166	824	1	ENST00000263377.2:c.932del	p.Pro311ArgfsTer18	p.P311Rfs*18	ENST00000263377	NM_058243.2	311	cCg/cg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222965	36222965	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	189	811	0	ENST00000222270.7:c.5594T>C	p.Ile1865Thr	p.I1865T	ENST00000222270	NM_014727.1	1865	aTc/aCc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228795	36228795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	145	710	1	ENST00000222270.7:c.7694G>A	p.Arg2565His	p.R2565H	ENST00000222270	NM_014727.1	2565	cGt/cAt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716280	52716280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	102	583	0	ENST00000322088.6:c.724G>A	p.Ala242Thr	p.A242T	ENST00000322088	NM_014225.5	242	Gcc/Acc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660606	227660606	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141295519		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	109	520	0	ENST00000305123.5:c.2849G>A	p.Arg950Gln	p.R950Q	ENST00000305123	NM_005544.2	950	cGg/cAg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264834	46264834	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	131	487	0	ENST00000371998.3:c.1704del	p.Ser569ValfsTer69	p.S569Vfs*69	ENST00000371998		568	aaG/aa																																																																															
RAF1	5894	MSKCC	GRCh37	3	12633229	12633229	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	119	536	0	ENST00000251849.4:c.1171A>G	p.Arg391Gly	p.R391G	ENST00000251849	NM_002880.3	391	Agg/Ggg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928927	49928927	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	164	742	0	ENST00000296474.3:c.3439A>G	p.Ile1147Val	p.I1147V	ENST00000296474	NM_002447.2	1147	Att/Gtt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71015044	71015044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	63	261	0	ENST00000318789.4:c.1886C>T	p.Ala629Val	p.A629V	ENST00000318789	NM_032682.5	629	gCc/gTc																																																																															
KDR	3791	MSKCC	GRCh37	4	55948792	55948792	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	119	370	0	ENST00000263923.4:c.3673C>T	p.Gln1225Ter	p.Q1225*	ENST00000263923	NM_002253.2	1225	Cag/Tag																																																																															
TET2	54790	MSKCC	GRCh37	4	106197435	106197435	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	66	384	0	ENST00000380013.4:c.5772del	p.Ala1925ProfsTer25	p.A1925Pfs*25	ENST00000380013	NM_001127208.2	1923	gAa/ga																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007314	143007314	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	99	354	0	ENST00000262992.4:c.2470A>G	p.Met824Val	p.M824V	ENST00000262992	NM_001101669.1	824	Atg/Gtg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081595	143081595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	99	469	0	ENST00000262992.4:c.1479G>T	p.Glu493Asp	p.E493D	ENST00000262992	NM_001101669.1	493	gaG/gaT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541199	187541199	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	80	341	0	ENST00000441802.2:c.6541G>C	p.Val2181Leu	p.V2181L	ENST00000441802	NM_005245.3	2181	Gtg/Ctg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155573	56155573	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	78	410	1	ENST00000399503.3:c.665G>T	p.Gly222Val	p.G222V	ENST00000399503	NM_005921.1	222	gGa/gTa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179445	56179445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	88	353	0	ENST00000399503.3:c.3758C>T	p.Ala1253Val	p.A1253V	ENST00000399503	NM_005921.1	1253	gCa/gTa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183314	56183314	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	65	500	0	ENST00000399503.3:c.4224A>C	p.Gln1408His	p.Q1408H	ENST00000399503	NM_005921.1	1408	caA/caC																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149514472	149514472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	108	634	0	ENST00000261799.4:c.472G>A	p.Val158Met	p.V158M	ENST00000261799	NM_002609.3	158	Gtg/Atg																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045889	26045890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	109	450	0	ENST00000540144.1:c.254dup	p.Gln86ProfsTer13	p.Q86Pfs*13	ENST00000540144	NM_003531.2	84	cgt/cgTt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150016259	150016259	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	141	489	0	ENST00000253339.5:c.447G>C	p.Glu149Asp	p.E149D	ENST00000253339		149	gaG/gaC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884921	151884921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	89	351	0	ENST00000262189.6:c.4672C>T	p.Arg1558Trp	p.R1558W	ENST00000262189	NM_170606.2	1558	Cgg/Tgg																																																																															
LYN	4067	MSKCC	GRCh37	8	56863088	56863088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	143	595	1	ENST00000519728.1:c.355G>A	p.Ala119Thr	p.A119T	ENST00000519728	NM_002350.3	119	Gcc/Acc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5081805	5081805	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373353534		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	71	353	0	ENST00000381652.3:c.2515C>T	p.Arg839Trp	p.R839W	ENST00000381652	NM_004972.3	839	Cgg/Tgg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486274	8486274	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	24	344	0	ENST00000356435.5:c.2543A>G	p.Asp848Gly	p.D848G	ENST00000356435		848	gAc/gGc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974789	21974789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	38	145	1	ENST00000304494.5:c.38C>T	p.Ala13Val	p.A13V	ENST00000304494	NM_000077.4	13	gCt/gTt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98218572	98218572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	49	457	3	ENST00000331920.6:c.3292G>A	p.Val1098Ile	p.V1098I	ENST00000331920	NM_000264.3	1098	Gtt/Att																																																																															
ABL1	25	MSKCC	GRCh37	9	133760481	133760481	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143811852		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	170	724	1	ENST00000318560.5:c.2804C>T	p.Thr935Met	p.T935M	ENST00000318560	NM_005157.4	935	aCg/aTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413082	139413082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	126	608	0	ENST00000277541.6:c.1060G>A	p.Val354Met	p.V354M	ENST00000277541	NM_017617.3	354	Gtg/Atg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39914683	39914683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	42	562	2	ENST00000378444.4:c.4679C>T	p.Thr1560Met	p.T1560M	ENST00000378444	NM_001123385.1	1560	aCg/aTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411003	63411003	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	151	600	0	ENST00000330258.3:c.2164T>G	p.Phe722Val	p.F722V	ENST00000330258	NM_152424.3	722	Ttc/Gtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	57	363	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207146	1207146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	91	761	0	ENST00000326873.7:c.234G>T	p.Lys78Asn	p.K78N	ENST00000326873	NM_000455.4	78	aaG/aaT																																																																															
MTOR	2475	MSKCC	GRCh37	1	11264660	11264660	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	43	532	0	ENST00000361445.4:c.3902G>T	p.Arg1301Leu	p.R1301L	ENST00000361445	NM_004958.3	1301	cGc/cTc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793440	242793440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	72	506	0	ENST00000334409.5:c.637C>G	p.Pro213Ala	p.P213A	ENST00000334409	NM_005018.2	213	Ccc/Gcc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217108	66217108	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0028897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	54	299	0	ENST00000273854.3:c.2507G>C	p.Arg836Thr	p.R836T	ENST00000273854	NM_004439.5	836	aGg/aCg																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15808651	15808651	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	66	555	0	ENST00000307771.7:c.33G>C	p.Glu11Asp	p.E11D	ENST00000307771	NM_005089.3	11	gaG/gaC																																																																															
CDC73	79577	MSKCC	GRCh37	1	193107231	193107231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	40	291	0	ENST00000367435.3:c.440G>T	p.Arg147Leu	p.R147L	ENST00000367435	NM_024529.4	147	cGc/cTc																																																																															
RET	5979	MSKCC	GRCh37	10	43600605	43600605	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	47	475	0	ENST00000355710.3:c.831C>A	p.Asp277Glu	p.D277E	ENST00000355710	NM_020975.4	277	gaC/gaA																																																																															
POLE	5426	MSKCC	GRCh37	12	133218321	133218321	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	56	606	1	ENST00000320574.5:c.5290G>T	p.Ala1764Ser	p.A1764S	ENST00000320574	NM_006231.2	1764	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0028899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	79	537	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212283	36212283	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	56	560	2	ENST00000222270.7:c.2034G>T	p.Glu678Asp	p.E678D	ENST00000222270	NM_014727.1	678	gaG/gaT																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244158	153244158	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	34	500	0	ENST00000281708.4:c.1999G>C	p.Gly667Arg	p.G667R	ENST00000281708	NM_033632.3	667	Ggg/Cgg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31464425	31464425	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	252	743	1	ENST00000344624.3:c.2492A>T	p.Lys831Met	p.K831M	ENST00000344624		831	aAg/aTg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249800	110249800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	73	650	0	ENST00000374672.4:c.875C>T	p.Pro292Leu	p.P292L	ENST00000374672	NM_004235.4	292	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	638	766	0	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435422	18435422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	210	271	1	ENST00000266497.5:c.407C>T	p.Ala136Val	p.A136V	ENST00000266497		136	gCt/gTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144114	11144114	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	766	733	3	ENST00000344626.4:c.3695G>T	p.Gly1232Val	p.G1232V	ENST00000344626	NM_003072.3	1232	gGc/gTc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029437	16029439	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	349	524	0	ENST00000268712.3:c.1591_1593delGAA	p.Glu531del	p.E531del	ENST00000268712	NM_006311.3	531	GAA/-																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149441342	149441342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	103	586	2	ENST00000286301.3:c.1697C>A	p.Pro566His	p.P566H	ENST00000286301	NM_005211.3	566	cCc/cAc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77043905	77043905	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	147	561	0	ENST00000356341.3:c.1421A>C	p.Tyr474Ser	p.Y474S	ENST00000356341	NM_002576.4	474	tAc/tCc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416612	121416612	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	250	568	0	ENST00000257555.6:c.41C>G	p.Ala14Gly	p.A14G	ENST00000257555		14	gCg/gGg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28963993	28963993	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	21	334	0	ENST00000282397.4:c.1909A>G	p.Arg637Gly	p.R637G	ENST00000282397	NM_002019.4	637	Aga/Gga																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38641714	38641714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	135	457	0	ENST00000299084.4:c.674C>T	p.Ser225Phe	p.S225F	ENST00000299084	NM_152594.2	225	tCc/tTc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479751	67479751	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	211	450	1	ENST00000327367.4:c.1058C>A	p.Ala353Asp	p.A353D	ENST00000327367	NM_005902.3	353	gCc/gAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29496953	29496953	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	298	342	0	ENST00000358273.4:c.524A>G	p.His175Arg	p.H175R	ENST00000358273	NM_001042492.2	175	cAt/cGt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41223037	41223037	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	263	567	0	ENST00000357654.3:c.4894G>C	p.Val1632Leu	p.V1632L	ENST00000357654	NM_007294.3	1632	Gtg/Ctg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688664	47688664	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	221	341	0	ENST00000347630.2:c.636G>T	p.Gln212His	p.Q212H	ENST00000347630	NM_001007230.1	212	caG/caT																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554704	63554704	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	139	465	0	ENST00000307078.5:c.35A>C	p.Asp12Ala	p.D12A	ENST00000307078	NM_004655.3	12	gAc/gCc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905380	50905380	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	285	779	0	ENST00000440232.2:c.588G>T	p.Glu196Asp	p.E196D	ENST00000440232	NM_002691.3	196	gaG/gaT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251614	212251614	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs141127257		P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	104	345	0	ENST00000342788.4:c.3445G>T	p.Gly1149Cys	p.G1149C	ENST00000342788	NM_005235.2	1149	Ggt/Tgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101046	41101046	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	402	480	0	ENST00000373198.4:c.1310C>A	p.Ala437Asp	p.A437D	ENST00000373198	NM_133170.3	437	gCc/gAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47139546	47139546	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	143	331	0	ENST00000409792.3:c.5041G>T	p.Gly1681Ter	p.G1681*	ENST00000409792	NM_014159.6	1681	Gga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390122	89390122	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	169	330	1	ENST00000336596.2:c.871C>A	p.Pro291Thr	p.P291T	ENST00000336596	NM_005233.5	291	Ccg/Acg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200148	128200148	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	205	586	0	ENST00000341105.2:c.1157T>A	p.Leu386Gln	p.L386Q	ENST00000341105	NM_032638.4	386	cTg/cAg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134514486	134514486	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	162	439	0	ENST00000398015.3:c.13T>G	p.Tyr5Asp	p.Y5D	ENST00000398015	NM_004441.4	5	Tat/Gat																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134885806	134885806	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	182	471	0	ENST00000398015.3:c.1717G>T	p.Ala573Ser	p.A573S	ENST00000398015	NM_004441.4	573	Gct/Tct																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186503956	186503956	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	82	241	0	ENST00000323963.5:c.521C>A	p.Pro174Gln	p.P174Q	ENST00000323963		174	cCa/cAa																																																																															
BCL6	604	MSKCC	GRCh37	3	187440357	187440357	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	431	402	0	ENST00000232014.4:c.2010A>T	p.Lys670Asn	p.K670N	ENST00000232014	NM_001130845.1	670	aaA/aaT																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512391	149512391	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	78	648	0	ENST00000261799.4:c.1049G>C	p.Trp350Ser	p.W350S	ENST00000261799	NM_002609.3	350	tGg/tCg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636893	176636893	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	370	423	0	ENST00000439151.2:c.1493G>T	p.Arg498Leu	p.R498L	ENST00000439151	NM_022455.4	498	cGa/cTa																																																																															
IRF4	3662	MSKCC	GRCh37	6	394996	394996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	209	428	0	ENST00000380956.4:c.392G>A	p.Gly131Glu	p.G131E	ENST00000380956	NM_001195286.1	131	gGa/gAa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152420027	152420027	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	466	525	0	ENST00000206249.3:c.1714G>T	p.Gly572Cys	p.G572C	ENST00000206249	NM_000125.3	572	Ggc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012340	152012340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	105	377	0	ENST00000262189.6:c.473G>T	p.Gly158Val	p.G158V	ENST00000262189	NM_170606.2	158	gGa/gTa																																																																															
ATRX	546	MSKCC	GRCh37	X	76855214	76855214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	261	267	0	ENST00000373344.5:c.5773G>T	p.Asp1925Tyr	p.D1925Y	ENST00000373344	NM_000489.3	1925	Gat/Tat																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004366	150004367	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	A			P-0028903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	330	396	0	ENST00000253339.5:c.1858_1859delinsT	p.Asn620SerfsTer28	p.N620Sfs*28	ENST00000253339		620	AAc/Tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	93	349	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238758086		P-0028904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	141	553	0	ENST00000358026.2:c.2729C>T	p.Thr910Met	p.T910M	ENST00000358026	NM_001128849.1	910	aCg/aTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	88	369	0	ENST00000288602.6:c.1397G>A	p.Gly466Glu	p.G466E	ENST00000288602	NM_004333.4	466	gGa/gAa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287446	46287446	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	93	339	0	ENST00000334344.6:c.5305C>T	p.Arg1769Ter	p.R1769*	ENST00000334344	NM_152641.2	1769	Cga/Tga																																																																															
JAK3	3718	MSKCC	GRCh37	19	17950376	17950376	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	145	618	2	ENST00000458235.1:c.1351C>T	p.Arg451Ter	p.R451*	ENST00000458235	NM_000215.3	451	Cga/Tga																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206667267	206667267	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	222	410	0	ENST00000367120.3:c.2060G>T	p.Cys687Phe	p.C687F	ENST00000367120	NM_014002.3	687	tGc/tTc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2120502	2120502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	165	686	0	ENST00000219476.3:c.1762G>A	p.Glu588Lys	p.E588K	ENST00000219476	NM_000548.3	588	Gag/Aag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492906	56492916	+	frameshift_variant	Frame_Shift_Del	DEL	GGCAGCCAGCT	GGCAGCCAGCT	-			P-0028904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	98	171	0	ENST00000407977.2:c.23_33del	p.Gln8ProfsTer28	p.Q8Pfs*28	ENST00000407977		8	cAGCTGGCTGCC/c																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0028913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	144	451	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	561	596	4	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140481412	140481412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	145	404	1	ENST00000288602.6:c.1396G>A	p.Gly466Arg	p.G466R	ENST00000288602	NM_004333.4	466	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0028913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	70	237	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																																																															
APC	324	MSKCC	GRCh37	5	112174658	112174658	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	19	380	1	ENST00000257430.4:c.3367C>T	p.Gln1123Ter	p.Q1123*	ENST00000257430	NM_000038.5	1123	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577546	7577547	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	500	525	0	ENST00000269305.4:c.734dup	p.Met246HisfsTer18	p.M246Hfs*18	ENST00000269305	NM_001126112.2	245	ggc/ggGc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295759	212295759	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	237	461	0	ENST00000342788.4:c.2554A>C	p.Lys852Gln	p.K852Q	ENST00000342788	NM_005235.2	852	Aaa/Caa																																																																															
ATR	545	MSKCC	GRCh37	3	142204013	142204013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	74	415	0	ENST00000350721.4:c.6190C>T	p.Leu2064Phe	p.L2064F	ENST00000350721	NM_001184.3	2064	Ctc/Ttc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32181482	32181482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	113	578	0	ENST00000375023.3:c.2303C>T	p.Thr768Ile	p.T768I	ENST00000375023	NM_004557.3	768	aCt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0028914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	167	496	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	183	556	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																															
PMS1	5378	MSKCC	GRCh37	2	190718995	190718995	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	71	201	0	ENST00000441310.2:c.997A>T	p.Met333Leu	p.M333L	ENST00000441310	NM_000534.4	333	Atg/Ttg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739096	40739096	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	129	458	0	ENST00000373198.4:c.3188T>A	p.Leu1063His	p.L1063H	ENST00000373198	NM_133170.3	1063	cTc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788617	3788617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			579	25	397	1	ENST00000262367.5:c.4337G>A	p.Arg1446His	p.R1446H	ENST00000262367	NM_004380.2	1446	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			678	162	646	1	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484596	57484596	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			508	135	391	0	ENST00000371085.3:c.680A>T	p.Gln227Leu	p.Q227L	ENST00000371085	NM_000516.4	227	cAg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41514515	41514515	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			638	45	496	0	ENST00000373198.4:c.146C>A	p.Thr49Asn	p.T49N	ENST00000373198	NM_133170.3	49	aCc/aAc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65323428	65323428	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			483	89	450	0	ENST00000342505.4:c.1369G>T	p.Gly457Ter	p.G457*	ENST00000342505	NM_002227.2	457	Gga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495050	56495050	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758743468		P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			636	92	527	0	ENST00000267101.3:c.3407G>A	p.Arg1136His	p.R1136H	ENST00000267101	NM_001982.3	1136	cGc/cAc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864591	57864592	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			696	106	718	1	ENST00000228682.2:c.2068_2069delinsAT	p.Pro690Ile	p.P690I	ENST00000228682	NM_005269.2	690	CCc/ATc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220433	1220433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			605	92	621	0	ENST00000326873.7:c.526G>T	p.Asp176Tyr	p.D176Y	ENST00000326873	NM_000455.4	176	Gac/Tac																																																																															
CUL3	8452	MSKCC	GRCh37	2	225342995	225342995	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			510	146	501	0	ENST00000264414.4:c.2097A>T	p.Arg699Ser	p.R699S	ENST00000264414	NM_003590.4	699	agA/agT																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149509368	149509368	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			470	80	465	0	ENST00000261799.4:c.1531C>A	p.Arg511Ser	p.R511S	ENST00000261799	NM_002609.3	511	Cgc/Agc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123200032	123200032	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			192	21	236	0	ENST00000218089.9:c.2104G>T	p.Asp702Tyr	p.D702Y	ENST00000218089	NM_001042749.1	702	Gac/Tac																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115275431	115275431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			313	23	310	0	ENST00000438362.2:c.982C>T	p.Pro328Ser	p.P328S	ENST00000438362	NM_001242891.1	328	Cca/Tca																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458017	120458017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			422	92	425	0	ENST00000256646.2:c.7328C>T	p.Pro2443Leu	p.P2443L	ENST00000256646	NM_024408.3	2443	cCt/cTt																																																																															
EED	8726	MSKCC	GRCh37	11	85968579	85968579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			318	24	282	0	ENST00000263360.6:c.575C>T	p.Ala192Val	p.A192V	ENST00000263360	NM_003797.3	192	gCt/gTt																																																																															
CDK8	1024	MSKCC	GRCh37	13	26975467	26975467	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	70	399	0	ENST00000381527.3:c.1093G>T	p.Asp365Tyr	p.D365Y	ENST00000381527	NM_001260.1	365	Gat/Tat																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66521938	66521938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	33	327	1	ENST00000358598.2:c.593G>A	p.Gly198Glu	p.G198E	ENST00000358598	NM_212471.2	198	gGg/gAg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353804	15353804	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			445	27	439	0	ENST00000263377.2:c.3076del	p.Gln1026SerfsTer42	p.Q1026Sfs*42	ENST00000263377	NM_058243.2	1026	Cag/ag																																																																															
JAK3	3718	MSKCC	GRCh37	19	17954587	17954587	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			622	111	621	2	ENST00000458235.1:c.307C>A	p.Arg103Ser	p.R103S	ENST00000458235	NM_000215.3	103	Cgc/Agc																																																																															
ALK	238	MSKCC	GRCh37	2	29940476	29940476	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	35	405	1	ENST00000389048.3:c.755C>A	p.Ser252Tyr	p.S252Y	ENST00000389048	NM_004304.4	252	tCc/tAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153271241	153271242	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			305	19	267	0	ENST00000281708.4:c.536_537delinsTT	p.Arg179Leu	p.R179L	ENST00000281708	NM_033632.3	179	cGC/cTT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0028922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	46	354	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
CDK4	1019	MSKCC	GRCh37	12	58144731	58144731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	33	392	0	ENST00000257904.6:c.497G>A	p.Ser166Asn	p.S166N	ENST00000257904	NM_000075.3	166	aGc/aAc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061477	38061477	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	24	386	0	ENST00000250448.2:c.512C>G	p.Pro171Arg	p.P171R	ENST00000250448	NM_004496.3	171	cCg/cGg																																																																															
CBFB	865	MSKCC	GRCh37	16	67063694	67063702	+	inframe_deletion	In_Frame_Del	DEL	GCCGCGACG	GCCGCGACG	-			P-0028922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	25	290	0	ENST00000412916.2:c.148_156del	p.Asp50_Arg52del	p.D50_R52del	ENST00000412916		48	tGCCGCGACGgc/tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916923	178916923	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	48	534	0	ENST00000263967.3:c.310C>A	p.Pro104Thr	p.P104T	ENST00000263967	NM_006218.2	104	Cca/Aca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0028928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	648	293	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258694	16258694	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	245	502	1	ENST00000375759.3:c.5959C>T	p.Gln1987Ter	p.Q1987*	ENST00000375759	NM_015001.2	1987	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057924	27057925	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0028928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	252	491	0	ENST00000324856.7:c.1635_1636del	p.Gln546GlufsTer76	p.Q546Efs*76	ENST00000324856	NM_006015.4	544	caCCcc/cacc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	169	354	0				ENST00000310581	NM_198253.2																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0028929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	198	324	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	272	268	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729094	66729099	+	inframe_deletion	In_Frame_Del	DEL	TGGAGA	TGGAGA	-			P-0028929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	323	450	0	ENST00000307102.5:c.303_308delGGAGAT	p.Glu102_Ile103del	p.E102_I103del	ENST00000307102	NM_002755.3	101	cTGGAGAtc/ctc																																																																															
CBL	867	MSKCC	GRCh37	11	119169166	119169166	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140725852		P-0028929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	214	410	0	ENST00000264033.4:c.2350G>A	p.Val784Met	p.V784M	ENST00000264033	NM_005188.3	784	Gtg/Atg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95557393	95557393	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	213	387	0	ENST00000343455.3:c.5581G>T	p.Glu1861Ter	p.E1861*	ENST00000343455	NM_177438.2	1861	Gaa/Taa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457653	67457653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	395	540	0	ENST00000327367.4:c.463G>A	p.Asp155Asn	p.D155N	ENST00000327367	NM_005902.3	155	Gac/Aac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221280	36221280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	321	599	1	ENST00000222270.7:c.5114G>A	p.Arg1705Gln	p.R1705Q	ENST00000222270	NM_014727.1	1705	cGa/cAa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526692	106526692	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	200	358	0	ENST00000359195.3:c.2985G>T	p.Met995Ile	p.M995I	ENST00000359195	NM_002649.2	995	atG/atT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411438	63411438	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	248	605	0	ENST00000330258.3:c.1729C>T	p.Gln577Ter	p.Q577*	ENST00000330258	NM_152424.3	577	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	152	392	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs926053251		P-0028930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	37	443	0	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986588	36986601	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGCTGGCGGCGT	GGGGCTGGCGGCGT	-			P-0028930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	32	414	0	ENST00000354822.5:c.1088_1101del	p.His363ArgfsTer71	p.H363Rfs*71	ENST00000354822	NM_001079668.2	363	cACGCCGCCAGCCCC/c																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986697	36986710	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCCGCCTGCGC	GCCGCCGCCTGCGC	-			P-0028930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	12	25	0	ENST00000354822.5:c.979_992del	p.Ala327SerfsTer107	p.A327Sfs*107	ENST00000354822	NM_001079668.2	327	GCGCAGGCGGCGGCa/a																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678332	88678332	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	46	485	0	ENST00000360948.2:c.1204G>A	p.Glu402Lys	p.E402K	ENST00000360948	NM_001012338.2	402	Gag/Aag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943809	9943809	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	24	307	0	ENST00000330684.3:c.1132T>A	p.Trp378Arg	p.W378R	ENST00000330684	NM_001134407.1	378	Tgg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578412	7578414	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0028930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	88	542	0	ENST00000269305.4:c.516_518del	p.Val173del	p.V173del	ENST00000269305	NM_001126112.2	172	gtTGTg/gtg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134193	11134193	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0028930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	83	357	0	ENST00000344626.4:c.2860-1G>A		p.X954_splice	ENST00000344626	NM_003072.3	954																																																																																
PDCD1LG2	80380	MSKCC	GRCh37	9	5534886	5534886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	83	485	0	ENST00000397747.3:c.197C>T	p.Thr66Ile	p.T66I	ENST00000397747	NM_025239.3	66	aCa/aTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0028934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	52	332	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464577	25464577	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0028934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	72	516	0	ENST00000264709.3:c.1937-1G>C		p.X646_splice	ENST00000264709	NM_175629.2	646																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	198	359	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0028935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	247	466	1	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
MPL	4352	MSKCC	GRCh37	1	43804988	43804988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	101	368	3	ENST00000372470.3:c.438G>T	p.Gln146His	p.Q146H	ENST00000372470	NM_005373.2	146	caG/caT																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046637	30046637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	78	398	0	ENST00000331968.5:c.2546G>A	p.Arg849Gln	p.R849Q	ENST00000331968	NM_002742.2	849	cGa/cAa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660837	227660837	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200073898		P-0028935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	105	411	0	ENST00000305123.5:c.2618G>A	p.Arg873Gln	p.R873Q	ENST00000305123	NM_005544.2	873	cGg/cAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265789	41266324	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTA	CAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTA	-			P-0028935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	48	39	0	ENST00000349496.5:c.13+217_241+80del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0028936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	48	426	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17117129	17117129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	48	459	1	ENST00000285071.4:c.1580G>A	p.Arg527Gln	p.R527Q	ENST00000285071	NM_144997.5	527	cGa/cAa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045473	47045476	+	frameshift_variant	Frame_Shift_Del	DEL	TACC	TACC	-			P-0028936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	71	472	0	ENST00000329236.7:c.2206_2209del	p.Tyr736GlyfsTer32	p.Y736Gfs*32	ENST00000329236	NM_001204466.1	736	TACCgg/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	418	400	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577599	7577600	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	223	474	0	ENST00000269305.4:c.681dup	p.Asp228Ter	p.D228*	ENST00000269305	NM_001126112.2	227	-/T																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699294	117699294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	40	354	0	ENST00000369458.3:c.347G>A	p.Arg116Gln	p.R116Q	ENST00000369458	NM_024626.3	116	cGg/cAg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946161	71946161	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0028942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	61	602	0	ENST00000298229.2:c.2417T>G	p.Leu806Arg	p.L806R	ENST00000298229	NM_001567.3	806	cTc/cGc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52719877	52719877	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	59	618	0	ENST00000322088.6:c.1089G>T	p.Glu363Asp	p.E363D	ENST00000322088	NM_014225.5	363	gaG/gaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	308	425	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32945129	32945129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	129	399	0	ENST00000380152.3:c.8524C>T	p.Arg2842Cys	p.R2842C	ENST00000380152		2842	Cgc/Tgc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739594	41739594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	390	370	0	ENST00000242208.4:c.379G>T	p.Ala127Ser	p.A127S	ENST00000242208	NM_002192.2	127	Gcc/Tcc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101631	27101631	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	267	763	0	ENST00000324856.7:c.4913del	p.Asp1638ValfsTer16	p.D1638Vfs*16	ENST00000324856	NM_006015.4	1638	gAt/gt																																																																															
RET	5979	MSKCC	GRCh37	10	43602018	43602018	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	192	598	0	ENST00000355710.3:c.1062T>A	p.Tyr354Ter	p.Y354*	ENST00000355710	NM_020975.4	354	taT/taA																																																																															
ATM	472	MSKCC	GRCh37	11	108205835	108205835	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	267	370	0	ENST00000278616.4:c.8150A>C	p.Lys2717Thr	p.K2717T	ENST00000278616	NM_000051.3	2717	aAg/aCg																																																																															
POLE	5426	MSKCC	GRCh37	12	133263869	133263870	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	142	355	0	ENST00000320574.5:c.32_33del	p.Ala11GlyfsTer12	p.A11Gfs*12	ENST00000320574	NM_006231.2	11	gCG/g																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609706	81609706	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	474	423	0	ENST00000298171.2:c.1304T>C	p.Val435Ala	p.V435A	ENST00000298171	NM_000369.2	435	gTc/gCc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78867572	78867572	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	246	600	0	ENST00000306801.3:c.2308G>T	p.Gly770Cys	p.G770C	ENST00000306801	NM_020761.2	770	Ggc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221298	1221308	+	frameshift_variant	Frame_Shift_Del	DEL	TCCCGGGCGAC	TCCCGGGCGAC	-			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	610	614	0	ENST00000326873.7:c.822_832del	p.Ile274MetfsTer7	p.I274Mfs*7	ENST00000326873	NM_000455.4	274	aTCCCGGGCGAC/a																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390204	89390204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	222	321	0	ENST00000336596.2:c.953N>A	p.Pro318Gln	p.P318Q	ENST00000336596	NM_005233.5	318	cCa/cAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540161	187540161	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	169	466	1	ENST00000441802.2:c.7579G>C	p.Val2527Leu	p.V2527L	ENST00000441802	NM_005245.3	2527	Gtt/Ctt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589225	67589225	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	277	373	0	ENST00000274335.5:c.1213A>G	p.Ile405Val	p.I405V	ENST00000274335		405	Ata/Gta																																																																															
HGF	3082	MSKCC	GRCh37	7	81346551	81346551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	214	310	2	ENST00000222390.5:c.1402C>A	p.Arg468Ser	p.R468S	ENST00000222390	NM_000601.4	468	Cgt/Agt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730915	40730915	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AG			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	248	487	0	ENST00000373198.4:c.3620delinsCT	p.Arg1207ProfsTer17	p.R1207Pfs*17	ENST00000373198	NM_133170.3	1207	cGt/cCTt																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0028947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	118	739	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745529	162745529	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	26	491	0	ENST00000367921.3:c.1944C>A	p.Asp648Glu	p.D648E	ENST00000367921	NM_006182.2	648	gaC/gaA																																																																															
MET	4233	MSKCC	GRCh37	7	116340276	116340276	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	33	306	0	ENST00000397752.3:c.1142del	p.Asn381ThrfsTer3	p.N381Tfs*3	ENST00000397752	NM_000245.2	380	Aaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0028949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	393	623	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	207	256	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
ALK	238	MSKCC	GRCh37	2	30143128	30143128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	155	666	1	ENST00000389048.3:c.398G>A	p.Arg133His	p.R133H	ENST00000389048	NM_004304.4	133	cGc/cAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878455	151878455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	204	663	0	ENST00000262189.6:c.6490G>A	p.Gly2164Arg	p.G2164R	ENST00000262189	NM_170606.2	2164	Gga/Aga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	121	502	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0028951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	76	720	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974696	21974696	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	38	450	0	ENST00000304494.5:c.131del	p.Tyr44SerfsTer9	p.Y44Sfs*9	ENST00000304494	NM_000077.4	44	tAc/tc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225362481	225362481	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	46	377	0	ENST00000264414.4:c.1696C>A	p.Pro566Thr	p.P566T	ENST00000264414	NM_003590.4	566	Cca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0028955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	210	502	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831629	72831629	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	189	520	0	ENST00000268489.5:c.4952C>A	p.Thr1651Lys	p.T1651K	ENST00000268489	NM_006885.3	1651	aCg/aAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242484	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAACAT	AATTAAGAGAAGCAACAT	-			P-0028958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	93	484	0	ENST00000275493.2:c.2237_2254del	p.Glu746_Ser752delinsAla	p.E746_S752delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATct/gct																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0028958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	92	287	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0028960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	10	228	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0028960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	66	370	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
ATM	472	MSKCC	GRCh37	11	108192065	108192065	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	14	417	0	ENST00000278616.4:c.6490G>C	p.Glu2164Gln	p.E2164Q	ENST00000278616	NM_000051.3	2164	Gag/Cag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681461	30681461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	33	424	0	ENST00000376406.3:c.551C>T	p.Ser184Leu	p.S184L	ENST00000376406	NM_014641.2	184	tCa/tTa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228252	53228252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	39	596	1	ENST00000375401.3:c.2150C>T	p.Ser717Leu	p.S717L	ENST00000375401	NM_004187.3	717	tCa/tTa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720732	89720732	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	10	148	0	ENST00000371953.3:c.883del	p.Leu295TyrfsTer12	p.L295Yfs*12	ENST00000371953	NM_000314.4	295	Cta/ta																																																																															
NUF2	83540	MSKCC	GRCh37	1	163315571	163315571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	33	474	0	ENST00000271452.3:c.911C>T	p.Ser304Leu	p.S304L	ENST00000271452	NM_145697.2	304	tCa/tTa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716082	243716082	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0028960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	35	413	0	ENST00000263826.5:c.1112C>G	p.Ser371Ter	p.S371*	ENST00000263826	NM_005465.4	371	tCa/tGa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118875	115118876	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AATGTCC			P-0028960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	43	364	0	ENST00000257566.3:c.459_465dup	p.Ile156GlyfsTer6	p.I156Gfs*6	ENST00000257566	NM_016569.3	155	-/GGACATT																																																																															
BRCA2	675	MSKCC	GRCh37	13	32936817	32936817	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	24	336	0	ENST00000380152.3:c.7963C>T	p.Gln2655Ter	p.Q2655*	ENST00000380152		2655	Caa/Taa																																																																															
CDH1	999	MSKCC	GRCh37	16	68863692	68863698	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	ATTGATG	ATTGATG	-			P-0028960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	42	303	0	ENST00000261769.5:c.2432_2438del	p.Ile811LysfsTer3	p.I811Kfs*3	ENST00000261769	NM_004360.3	811	ATTGATGaa/aa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71050209	71050209	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	22	225	0	ENST00000318789.4:c.976C>T	p.His326Tyr	p.H326Y	ENST00000318789	NM_032682.5	326	Cat/Tat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951891	178951891	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	25	303	0	ENST00000263967.3:c.2946G>C	p.Glu982Asp	p.E982D	ENST00000263967	NM_006218.2	982	gaG/gaC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557287	187557287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	60	485	0	ENST00000441802.2:c.4075G>A	p.Glu1359Lys	p.E1359K	ENST00000441802	NM_005245.3	1359	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	260	405	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0028966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	561	499	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
TMEM127	55654	MSKCC	GRCh37	2	96919665	96919665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200351681		P-0028966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	266	372	0	ENST00000258439.3:c.598C>T	p.Pro200Ser	p.P200S	ENST00000258439	NM_001193304.2	200	Ccc/Tcc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212252712	212252712	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	132	258	0	ENST00000342788.4:c.3141A>T	p.Glu1047Asp	p.E1047D	ENST00000342788	NM_005235.2	1047	gaA/gaT																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660741	227660741	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	224	615	0	ENST00000305123.5:c.2714A>T	p.Gln905Leu	p.Q905L	ENST00000305123	NM_005544.2	905	cAg/cTg																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149245658	149245658	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	507	713	0	ENST00000360632.3:c.870del	p.Ile291SerfsTer28	p.I291Sfs*28	ENST00000360632	NM_015472.4	290	tcC/tc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151933020	151933020	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0028966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	84	108	0	ENST00000262189.6:c.2653-2A>T		p.X885_splice	ENST00000262189	NM_170606.2	885																																																																																
NBN	4683	MSKCC	GRCh37	8	90967752	90967752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	56	195	0	ENST00000265433.3:c.1156G>A	p.Val386Ile	p.V386I	ENST00000265433	NM_002485.4	386	Gtc/Atc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518043	8518043	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	126	341	0	ENST00000356435.5:c.1348G>T	p.Gly450Ter	p.G450*	ENST00000356435		450	Gga/Tga																																																																															
AR	367	MSKCC	GRCh37	X	66766352	66766352	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	46	114	0	ENST00000374690.3:c.1364G>C	p.Gly455Ala	p.G455A	ENST00000374690	NM_000044.3	455	gGt/gCt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0028972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	90	407	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0028972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	227	526	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0028972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	69	361	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164928	47164928	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	38	237	1	ENST00000409792.3:c.1198C>T	p.Arg400Ter	p.R400*	ENST00000409792	NM_014159.6	400	Cga/Tga																																																																															
SMO	6608	MSKCC	GRCh37	7	128829040	128829042	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0028972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	10	24	0	ENST00000249373.3:c.67_69delCTG	p.Leu23del	p.L23del	ENST00000249373	NM_005631.4	16	ggGCTg/ggg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39251184	39251185	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	53	473	1	ENST00000402219.2:c.1168dup	p.Ile390AsnfsTer4	p.I390Nfs*4	ENST00000402219	NM_005633.3	390	ata/aAta																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112910791	112910791	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	84	433	0	ENST00000351677.2:c.800A>T	p.Glu267Val	p.E267V	ENST00000351677	NM_002834.3	267	gAg/gTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576153	88576153	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140370971		P-0028972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	120	542	0	ENST00000360948.2:c.1520G>A	p.Arg507His	p.R507H	ENST00000360948	NM_001012338.2	507	cGc/cAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104637	69104637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	100	506	2	ENST00000288368.4:c.4481G>A	p.Arg1494His	p.R1494H	ENST00000288368	NM_024870.2	1494	cGc/cAc																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2492096	2492097	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	254	730	1	ENST00000355716.4:c.500dupC	p.Thr169AspfsTer65	p.T169Dfs*65	ENST00000355716	NM_003820.2	165	tgc/tgCc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188177	11188177	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	49	456	0	ENST00000361445.4:c.5917A>G	p.Ile1973Val	p.I1973V	ENST00000361445	NM_004958.3	1973	Atc/Gtc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16247420	16247420	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	183	353	0	ENST00000375759.3:c.1691A>G	p.Tyr564Cys	p.Y564C	ENST00000375759	NM_015001.2	564	tAt/tGt																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366987	40366987	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	283	646	5	ENST00000397332.2:c.210del	p.Thr71ArgfsTer69	p.T71Rfs*69	ENST00000397332	NM_001033082.2	70	ccC/cc																																																																															
MPL	4352	MSKCC	GRCh37	1	43804952	43804953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	79	363	0	ENST00000372470.3:c.408dup	p.Ser137GlnfsTer27	p.S137Qfs*27	ENST00000372470	NM_005373.2	134	-/C																																																																															
JUN	3725	MSKCC	GRCh37	1	59248118	59248120	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	75	165	0	ENST00000371222.2:c.623_625del	p.Pro208del	p.P208del	ENST00000371222	NM_002228.3	208	cCGCac/cac																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464955	120464955	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	58	540	0	ENST00000256646.2:c.5117A>G	p.His1706Arg	p.H1706R	ENST00000256646	NM_024408.3	1706	cAt/cGt																																																																															
RIT1	6016	MSKCC	GRCh37	1	155880271	155880271	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	253	489	0	ENST00000368323.3:c.133C>T	p.Arg45Ter	p.R45*	ENST00000368323	NM_006912.5	45	Cga/Tga																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206667323	206667323	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	255	602	1	ENST00000367120.3:c.2116C>T	p.Arg706Trp	p.R706W	ENST00000367120	NM_014002.3	706	Cgg/Tgg																																																																															
PARP1	142	MSKCC	GRCh37	1	226573330	226573330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	180	512	1	ENST00000366794.5:c.886G>A	p.Glu296Lys	p.E296K	ENST00000366794	NM_001618.3	296	Gag/Aag																																																																															
RET	5979	MSKCC	GRCh37	10	43597885	43597885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	312	866	1	ENST00000355710.3:c.433G>A	p.Val145Ile	p.V145I	ENST00000355710	NM_020975.4	145	Gta/Ata																																																																															
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765123636		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	65	276	0	ENST00000369902.3:c.71dup	p.Ala25GlyfsTer23	p.A25Gfs*23	ENST00000369902	NM_016169.3	22	gcc/gCcc																																																																															
PGR	5241	MSKCC	GRCh37	11	100912739	100912739	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	210	496	1	ENST00000325455.5:c.2583del	p.Gly862GlufsTer31	p.G862Efs*31	ENST00000325455	NM_001202474.3	861	aaA/aa																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981613	101981614	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	56	145	0	ENST00000282441.5:c.40dup	p.Gln14ProfsTer98	p.Q14Pfs*98	ENST00000282441	NM_001130145.2	12	gcc/gCcc																																																																															
ATM	472	MSKCC	GRCh37	11	108150265	108150265	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	154	402	0	ENST00000278616.4:c.3332T>G	p.Leu1111Arg	p.L1111R	ENST00000278616	NM_000051.3	1111	cTt/cGt																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505403	125505404	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	184	345	0	ENST00000428830.2:c.700dup	p.Ile234AsnfsTer11	p.I234Nfs*11	ENST00000428830	NM_001114121.2	231	-/A																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438740	49438740	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	230	643	0	ENST00000301067.7:c.4750T>C	p.Tyr1584His	p.Y1584H	ENST00000301067	NM_003482.3	1584	Tac/Cac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	208	810	1	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856434	111856434	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	66	217	2	ENST00000341259.2:c.489delC	p.Thr165ProfsTer32	p.T165Pfs*32	ENST00000341259	NM_005475.2	162	gCc/gc																																																																															
POLE	5426	MSKCC	GRCh37	12	133202765	133202765	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	55	627	0	ENST00000320574.5:c.6469A>G	p.Ile2157Val	p.I2157V	ENST00000320574	NM_006231.2	2157	Atc/Gtc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28609744	28609744	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	314	641	0	ENST00000241453.7:c.1485G>T	p.Trp495Cys	p.W495C	ENST00000241453	NM_004119.2	495	tgG/tgT																																																																															
FLT1	2321	MSKCC	GRCh37	13	28895700	28895700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	267	530	0	ENST00000282397.4:c.3074C>T	p.Ala1025Val	p.A1025V	ENST00000282397	NM_002019.4	1025	gCg/gTg																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281758	49281758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	273	762	4	ENST00000282018.3:c.805G>A	p.Val269Ile	p.V269I	ENST00000282018	NM_020377.2	269	Gtc/Atc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	188	662	0	ENST00000349310.3:c.155T>G	p.Leu52Arg	p.L52R	ENST00000349310	NM_001014432.1	52	cTc/cGc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38614463	38614463	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	222	352	1	ENST00000299084.4:c.234del	p.Asp79ThrfsTer42	p.D79Tfs*42	ENST00000299084	NM_152594.2	77	Aaa/aa																																																																															
B2M	567	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	20	261	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	149	438	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500333	99500333	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	119	678	0	ENST00000268035.6:c.3766A>G	p.Arg1256Gly	p.R1256G	ENST00000268035	NM_000875.3	1256	Agg/Ggg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2126097	2126097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	293	796	0	ENST00000219476.3:c.2668C>A	p.His890Asn	p.H890N	ENST00000219476	NM_000548.3	890	Cat/Aat																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134442	2134442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	341	797	1	ENST00000219476.3:c.4219G>A	p.Val1407Met	p.V1407M	ENST00000219476	NM_000548.3	1407	Gtg/Atg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138239	2138239	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	237	768	0	ENST00000219476.3:c.5172G>T	p.Gln1724His	p.Q1724H	ENST00000219476	NM_000548.3	1724	caG/caT																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225116	2225116	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	322	776	0	ENST00000326181.6:c.1351A>G	p.Lys451Glu	p.K451E	ENST00000326181	NM_032271.2	451	Aaa/Gaa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646980	23646981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1060502767		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	291	654	1	ENST00000261584.4:c.886dup	p.Met296AsnfsTer7	p.M296Nfs*7	ENST00000261584	NM_024675.3	296	atg/aAtg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762108866		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	97	326	5	ENST00000268489.5:c.10215dup	p.Gly3406ArgfsTer25	p.G3406Rfs*25	ENST00000268489	NM_006885.3	3405	-/C																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	227	680	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	257	627	0	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	212	655	2	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532465	63532465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	279	685	0	ENST00000307078.5:c.2114C>T	p.Ala705Val	p.A705V	ENST00000307078	NM_004655.3	705	gCt/gTt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	277	728	8	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120376	70120377	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	384	920	0	ENST00000245479.2:c.1380dup	p.Gly461ArgfsTer117	p.G461Rfs*117	ENST00000245479	NM_000346.3	460	acc/aCcc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615697	1615698	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	229	772	2	ENST00000344749.5:c.1573dup	p.Arg525ProfsTer28	p.R525Pfs*28	ENST00000344749	NM_001136139.2	525	cgg/cCgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152115	11152115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	265	643	0	ENST00000344626.4:c.4303G>A	p.Asp1435Asn	p.D1435N	ENST00000344626	NM_003072.3	1435	Gac/Aac																																																																															
UPF1	5976	MSKCC	GRCh37	19	18975016	18975016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	219	476	0	ENST00000262803.5:c.2813G>A	p.Arg938Gln	p.R938Q	ENST00000262803	NM_002911.3	938	cGg/cAg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256768	19256769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1202792889		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	164	622	1	ENST00000162023.5:c.944dup	p.Val316SerfsTer6	p.V316Sfs*6	ENST00000162023		315	cca/ccCa																																																																															
CD79A	973	MSKCC	GRCh37	19	42383185	42383185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	297	682	1	ENST00000221972.3:c.205G>A	p.Val69Ile	p.V69I	ENST00000221972	NM_021601.3	69	Gtc/Atc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	175	456	1	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
CIC	23152	MSKCC	GRCh37	19	42794424	42794424	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	204	863	0	ENST00000575354.2:c.1504T>A	p.Ser502Thr	p.S502T	ENST00000575354	NM_015125.3	502	Tcc/Acc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867277	45867277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	241	737	0	ENST00000391945.4:c.916G>A	p.Ala306Thr	p.A306T	ENST00000391945	NM_000400.3	306	Gcc/Acc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905983	50905983	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	262	745	0	ENST00000440232.2:c.955T>C	p.Cys319Arg	p.C319R	ENST00000440232	NM_002691.3	319	Tgc/Cgc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46587776	46587776	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	194	401	0	ENST00000263734.3:c.455-1G>T		p.X152_splice	ENST00000263734	NM_001430.4	152																																																																																
ACVR1	90	MSKCC	GRCh37	2	158636987	158636987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	230	569	0	ENST00000263640.3:c.193G>A	p.Val65Ile	p.V65I	ENST00000263640	NM_001105.4	65	Gtc/Atc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719224	190719224	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	172	310	0	ENST00000441310.2:c.1226A>G	p.His409Arg	p.H409R	ENST00000441310	NM_000534.4	409	cAc/cGc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660244	227660244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	216	723	1	ENST00000305123.5:c.3211G>A	p.Ala1071Thr	p.A1071T	ENST00000305123	NM_005544.2	1071	Gcc/Acc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12660190	12660190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	243	488	0	ENST00000251849.4:c.31A>G	p.Ile11Val	p.I11V	ENST00000251849	NM_002880.3	11	Atc/Gtc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391075	89391075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	50	660	1	ENST00000336596.2:c.1141C>T	p.Arg381Cys	p.R381C	ENST00000336596	NM_005233.5	381	Cgc/Tgc																																																																															
ATR	545	MSKCC	GRCh37	3	142285028	142285028	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	43	528	1	ENST00000350721.4:c.227T>A	p.Met76Lys	p.M76K	ENST00000350721	NM_001184.3	76	aTg/aAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919087	178919089	+	inframe_deletion	In_Frame_Del	DEL	TAG	TAG	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	137	234	0	ENST00000263967.3:c.573_575del	p.Ile191_Val192delinsMet	p.I191_V192delinsM	ENST00000263967	NM_006218.2	191	aTAGtg/atg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430206	181430208	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	134	325	3	ENST00000325404.1:c.67_69del	p.Gly23del	p.G23del	ENST00000325404	NM_003106.3	20	GGC/-																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430410	181430410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	269	676	2	ENST00000325404.1:c.262C>T	p.Arg88Trp	p.R88W	ENST00000325404	NM_003106.3	88	Cgg/Tgg																																																																															
BCL6	604	MSKCC	GRCh37	3	187447714	187447714	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138532510		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	248	594	0	ENST00000232014.4:c.479G>A	p.Arg160His	p.R160H	ENST00000232014	NM_001130845.1	160	cGt/cAt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127462	55127462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	229	586	0	ENST00000257290.5:c.250G>A	p.Val84Ile	p.V84I	ENST00000257290	NM_006206.4	84	Gtc/Atc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557273	187557273	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	49	594	1	ENST00000441802.2:c.4089del	p.Phe1363LeufsTer5	p.F1363Lfs*5	ENST00000441802	NM_005245.3	1363	ttT/tt																																																																															
SDHA	6389	MSKCC	GRCh37	5	228381	228381	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	109	470	0	ENST00000264932.6:c.703A>G	p.Ile235Val	p.I235V	ENST00000264932	NM_004168.2	235	Atc/Gtc																																																																															
SDHA	6389	MSKCC	GRCh37	5	256506	256506	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	46	356	0	ENST00000264932.6:c.1966A>G	p.Thr656Ala	p.T656A	ENST00000264932	NM_004168.2	656	Acc/Gcc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31410924	31410924	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	79	699	0	ENST00000344624.3:c.3596A>G	p.Tyr1199Cys	p.Y1199C	ENST00000344624		1199	tAc/tGc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	184	484	7	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	264	534	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
MSH3	4437	MSKCC	GRCh37	5	80024669	80024669	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	173	316	0	ENST00000265081.6:c.1454-1G>T		p.X485_splice	ENST00000265081	NM_002439.4	485																																																																																
RAD50	10111	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	188	291	3	ENST00000265335.6:c.2801delA	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048557	180048557	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	39	578	0	ENST00000261937.6:c.2005T>C	p.Tyr669His	p.Y669H	ENST00000261937	NM_182925.4	669	Tac/Cac																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911072	29911072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	188	736	0	ENST00000376809.5:c.371G>A	p.Gly124Asp	p.G124D	ENST00000376809	NM_002116.7	124	gGc/gAc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956526	93956526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	131	291	0	ENST00000369303.4:c.2710C>A	p.Leu904Met	p.L904M	ENST00000369303	NM_004440.3	904	Ctg/Atg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555345	106555345	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	190	453	0	ENST00000369096.4:c.2462A>G	p.Glu821Gly	p.E821G	ENST00000369096	NM_001198.3	821	gAa/gGa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100021	157100021	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs201842850		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	37	179	0	ENST00000346085.5:c.958A>G	p.Ser320Gly	p.S320G	ENST00000346085	NM_020732.3	320	Agc/Ggc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521939	157521939	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	67	544	0	ENST00000346085.5:c.4211A>G	p.Tyr1404Cys	p.Y1404C	ENST00000346085	NM_020732.3	1404	tAc/tGc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935496	13935496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	49	302	0	ENST00000405192.2:c.1360T>C	p.Tyr454His	p.Y454H	ENST00000405192	NM_001163147.1	454	Tat/Cat																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	208	416	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370961	55370961	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	706	670	0	ENST00000297316.4:c.263A>G	p.Gln88Arg	p.Q88R	ENST00000297316	NM_022454.3	88	cAg/cGg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372068	55372068	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	173	488	0	ENST00000297316.4:c.758A>G	p.Tyr253Cys	p.Y253C	ENST00000297316	NM_022454.3	253	tAc/tGc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964346	70964346	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	99	368	0	ENST00000276594.2:c.1682T>G	p.Phe561Cys	p.F561C	ENST00000276594	NM_024504.3	561	tTc/tGc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319959	8319959	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745582718		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	122	232	0	ENST00000356435.5:c.5542G>A	p.Val1848Ile	p.V1848I	ENST00000356435		1848	Gtt/Att																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98218617	98218617	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202052415		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	35	508	0	ENST00000331920.6:c.3247G>A	p.Val1083Met	p.V1083M	ENST00000331920	NM_000264.3	1083	Gtg/Atg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391706	139391706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	336	793	1	ENST00000277541.6:c.6485G>A	p.Ser2162Asn	p.S2162N	ENST00000277541	NM_017617.3	2162	aGc/aAc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245295	53245295	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	224	707	0	ENST00000375401.3:c.742C>A	p.Leu248Met	p.L248M	ENST00000375401	NM_004187.3	248	Ctg/Atg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411071	63411071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	233	572	0	ENST00000330258.3:c.2096G>A	p.Arg699His	p.R699H	ENST00000330258	NM_152424.3	699	cGt/cAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70361116	70361121	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	119	465	0	ENST00000374080.3:c.6315_6320delACAGCA	p.Gln2114_Gln2115del	p.Q2114_Q2115del	ENST00000374080		2102	CAGCAA/-																																																																															
ATRX	546	MSKCC	GRCh37	X	76937603	76937603	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	135	310	0	ENST00000373344.5:c.3145del	p.Ile1049Ter	p.I1049*	ENST00000373344	NM_000489.3	1049	Ata/ta																																																																															
ATRX	546	MSKCC	GRCh37	X	76949320	76949320	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	164	304	0	ENST00000373344.5:c.477del	p.Lys159AsnfsTer11	p.K159Nfs*11	ENST00000373344	NM_000489.3	159	aaA/aa																																																																															
XIAP	331	MSKCC	GRCh37	X	123034426	123034427	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	173	445	0	ENST00000355640.3:c.1189dup	p.Ile397AsnfsTer9	p.I397Nfs*9	ENST00000355640		395	gaa/gAaa																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123480553	123480553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	197	628	0	ENST00000371139.4:c.61C>T	p.Leu21Phe	p.L21F	ENST00000371139	NM_001114937.2	21	Ctt/Ttt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	250	632	12	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0028980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	291	556	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0028980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	106	369	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584572	48584572	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	263	450	0	ENST00000342988.3:c.745C>T	p.Gln249Ter	p.Q249*	ENST00000342988	NM_005359.5	249	Cag/Tag																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31368254	31368254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	684	583	0	ENST00000328111.2:c.125G>A	p.Arg42His	p.R42H	ENST00000328111	NM_006892.3	42	cGc/cAc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115266569	115266569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	203	589	0	ENST00000438362.2:c.1946G>A	p.Arg649His	p.R649H	ENST00000438362	NM_001242891.1	649	cGc/cAc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631098	69631098	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	236	556	0	ENST00000334134.2:c.314T>C	p.Leu105Pro	p.L105P	ENST00000334134	NM_005247.2	105	cTc/cCc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123182915	123182915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	67	316	1	ENST00000218089.9:c.880G>T	p.Val294Leu	p.V294L	ENST00000218089	NM_001042749.1	294	Gta/Tta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0028996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1213	95	770	3	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0028999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	144	452	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345768	152345769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	119	307	0	ENST00000359321.1:c.801dup	p.His268ThrfsTer11	p.H268Tfs*11	ENST00000359321	NM_005431.1	267	-/A																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032461	12032462	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	97	389	0	ENST00000353533.5:c.899dup	p.Leu300PhefsTer13	p.L300Ffs*13	ENST00000353533	NM_003010.3	299	-/T																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212008	36212008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	241	898	0	ENST00000222270.7:c.1759C>T	p.Pro587Ser	p.P587S	ENST00000222270	NM_014727.1	587	Cca/Tca																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	214	547	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	470	547	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786031	135786031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	288	687	2	ENST00000298552.3:c.1190C>T	p.Pro397Leu	p.P397L	ENST00000298552	NM_001162426.1	397	cCa/cTa																																																																															
TET1	80312	MSKCC	GRCh37	10	70446386	70446386	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	199	548	0	ENST00000373644.4:c.5326A>T	p.Lys1776Ter	p.K1776*	ENST00000373644	NM_030625.2	1776	Aaa/Taa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272272	15272272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	259	629	2	ENST00000263388.2:c.6167C>A	p.Ala2056Glu	p.A2056E	ENST00000263388	NM_000435.2	2056	gCa/gAa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441275	52441275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	220	478	0	ENST00000460680.1:c.495G>A	p.Met165Ile	p.M165I	ENST00000460680	NM_004656.3	165	atG/atA																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513514	149513514	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	203	585	0	ENST00000261799.4:c.689A>T	p.Asn230Ile	p.N230I	ENST00000261799	NM_002609.3	230	aAc/aTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	64	520	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0029019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	130	571	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CBL	867	MSKCC	GRCh37	11	119148500	119148513	+	frameshift_variant	Frame_Shift_Del	DEL	TGATCTGACTGGCT	TGATCTGACTGGCT	-			P-0029019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	101	513	0	ENST00000264033.4:c.1042_1055del	p.Asp348MetfsTer2	p.D348Mfs*2	ENST00000264033	NM_005188.3	347	ccTGATCTGACTGGCTta/ccta																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434325	49434326	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGAGAAAGGGTCGGAGGGCA			P-0029019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1641	90	789	0	ENST00000301067.7:c.7208_7227dup	p.Arg2410CysfsTer23	p.R2410Cfs*23	ENST00000301067	NM_003482.3	2409	-/TGCCCTCCGACCCTTTCTCC																																																																															
FLT1	2321	MSKCC	GRCh37	13	28896473	28896473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	53	462	0	ENST00000282397.4:c.2977C>T	p.Pro993Ser	p.P993S	ENST00000282397	NM_002019.4	993	Ccc/Tcc																																																																															
MED12	9968	MSKCC	GRCh37	X	70356147	70356147	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1240	421	627	0	ENST00000374080.3:c.5042C>G	p.Thr1681Ser	p.T1681S	ENST00000374080		1681	aCc/aGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0029061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	575	541	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0029061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	372	671	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737419	145737419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	120	619	0	ENST00000428558.2:c.3268G>A	p.Glu1090Lys	p.E1090K	ENST00000428558	NM_004260.3	1090	Gag/Aag																																																																															
TAP1	6890	MSKCC	GRCh37	6	32813525	32813525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	237	389	0	ENST00000354258.4:c.2258C>T	p.Ser753Phe	p.S753F	ENST00000354258	NM_000593.5	753	tCc/tTc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472573	88472573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	189	390	0	ENST00000360948.2:c.1982G>A	p.Ser661Asn	p.S661N	ENST00000360948	NM_001012338.2	661	aGt/aAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573542	48573542	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	182	312	0	ENST00000342988.3:c.128del	p.Leu43TrpfsTer2	p.L43Wfs*2	ENST00000342988	NM_005359.5	42	agT/ag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138550	11138550	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	164	593	0	ENST00000358026.2:c.3306C>G	p.Phe1102Leu	p.F1102L	ENST00000358026	NM_001128849.1	1102	ttC/ttG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0029063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	259	343	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752411	57752412	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0029063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	91	146	0	ENST00000274289.3:c.1161_1162delAG	p.Arg387SerfsTer3	p.R387Sfs*3	ENST00000274289	NM_006622.3	387	agAGtg/agtg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179455	56179457	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0029063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	162	262	0	ENST00000399503.3:c.3770_3772del	p.Cys1257del	p.C1257del	ENST00000399503	NM_005921.1	1256	tcTTGt/tct																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177526	56177527	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0029063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	241	323	0	ENST00000399503.3:c.2502_2503dup	p.Ser835PhefsTer5	p.S835Ffs*5	ENST00000399503	NM_005921.1	833	-/TT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0029064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	94	251	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	82	246	1	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																															
CDH1	999	MSKCC	GRCh37	16	68844241	68844241	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	143	415	1	ENST00000261769.5:c.830del	p.Pro277GlnfsTer5	p.P277Qfs*5	ENST00000261769	NM_004360.3	277	Cca/ca																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961471	54961471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	63	289	1	ENST00000312783.6:c.161C>T	p.Ser54Phe	p.S54F	ENST00000312783	NM_198436.1	54	tCc/tTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427369	49427369	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	90	597	0	ENST00000301067.7:c.11119C>T	p.Arg3707Ter	p.R3707*	ENST00000301067	NM_003482.3	3707	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27058045	27058045	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	69	395	0	ENST00000324856.7:c.1753C>T	p.Gln585Ter	p.Q585*	ENST00000324856	NM_006015.4	585	Cag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16263854	16263854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	50	586	0	ENST00000375759.3:c.10223C>T	p.Pro3408Leu	p.P3408L	ENST00000375759	NM_015001.2	3408	cCt/cTt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435877	110435877	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	35	525	0	ENST00000375856.3:c.2524C>T	p.Gln842Ter	p.Q842*	ENST00000375856	NM_003749.2	842	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72833979	72833979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	25	417	0	ENST00000268489.5:c.3914C>T	p.Ala1305Val	p.A1305V	ENST00000268489	NM_006885.3	1305	gCt/gTt																																																																															
EZH1	2145	MSKCC	GRCh37	17	40879737	40879737	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	85	491	0	ENST00000428826.2:c.162G>T	p.Gln54His	p.Q54H	ENST00000428826		54	caG/caT																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17387704	17387704	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	32	429	0	ENST00000359435.4:c.772G>C	p.Glu258Gln	p.E258Q	ENST00000359435	NM_001033549.1	258	Gag/Cag																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703652	47703652	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	35	379	0	ENST00000233146.2:c.2152C>G	p.Gln718Glu	p.Q718E	ENST00000233146	NM_000251.2	718	Caa/Gaa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1959731	1959731	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1416347752		P-0029064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	28	244	0	ENST00000382895.3:c.2953G>A	p.Glu985Lys	p.E985K	ENST00000382895	NM_133330.2	985	Gag/Aag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8517974	8517974	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	33	339	0	ENST00000356435.5:c.1417G>C	p.Asp473His	p.D473H	ENST00000356435		473	Gac/Cac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969444	44969444	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	58	503	0	ENST00000377967.4:c.4126G>C	p.Glu1376Gln	p.E1376Q	ENST00000377967	NM_021140.2	1376	Gaa/Caa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039363	47039363	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	196	596	0	ENST00000329236.7:c.755C>A	p.Ser252Tyr	p.S252Y	ENST00000329236	NM_001204466.1	252	tCc/tAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76972664	76972667	+	missense_variant	Missense_Mutation	ONP	GATG	GATG	AATA			P-0029064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	69	423	0	ENST00000373344.5:c.74_77delinsTATT	p.Ser25_Ser26delinsLeuLeu	p.S25_S26delinsLL	ENST00000373344	NM_000489.3	25	tCATCa/tTATTa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0029065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	32	353	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
HGF	3082	MSKCC	GRCh37	7	81331979	81331979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	20	272	1	ENST00000222390.5:c.2105G>A	p.Arg702His	p.R702H	ENST00000222390	NM_000601.4	702	cGt/cAt																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66524024	66524025	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAAA			P-0029065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	18	205	0	ENST00000358598.2:c.753_756dup	p.Val253Ter	p.V253*	ENST00000358598	NM_212471.2	251	agt/agTAAAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	45	366	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0029066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	54	478	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138825	64138825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	71	521	0	ENST00000334205.4:c.2192G>A	p.Arg731Gln	p.R731Q	ENST00000334205	NM_003942.2	731	cGg/cAg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464865	120464865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	29	268	0	ENST00000256646.2:c.5207G>T	p.Gly1736Val	p.G1736V	ENST00000256646	NM_024408.3	1736	gGg/gTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70406420	70406420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	60	540	1	ENST00000373644.4:c.3934G>T	p.Val1312Leu	p.V1312L	ENST00000373644	NM_030625.2	1312	Gtg/Ttg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118377127	118377127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	34	263	0	ENST00000534358.1:c.10520C>T	p.Ala3507Val	p.A3507V	ENST00000534358	NM_005933.3	3507	gCt/gTt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470615	25470615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	48	525	0	ENST00000264709.3:c.859G>T	p.Gly287Cys	p.G287C	ENST00000264709	NM_175629.2	287	Ggc/Tgc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793450	242793450	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0029066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	82	415	0	ENST00000334409.5:c.628-1G>C		p.X210_splice	ENST00000334409	NM_005018.2	210																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1807328	1807328	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	60	563	0	ENST00000260795.2:c.1577del	p.Met526ArgfsTer3	p.M526Rfs*3	ENST00000260795		526	aTg/ag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69000009	69000009	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	68	424	0	ENST00000288368.4:c.2078G>T	p.Gly693Val	p.G693V	ENST00000288368	NM_024870.2	693	gGa/gTa																																																																															
ATRX	546	MSKCC	GRCh37	X	76939205	76939205	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	51	499	0	ENST00000373344.5:c.1543A>T	p.Met515Leu	p.M515L	ENST00000373344	NM_000489.3	515	Atg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	140	592	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	93	332	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238758086		P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	168	665	0	ENST00000358026.2:c.2729C>T	p.Thr910Met	p.T910M	ENST00000358026	NM_001128849.1	910	aCg/aTg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030613	48030613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	101	423	1	ENST00000234420.5:c.3227G>A	p.Arg1076His	p.R1076H	ENST00000234420	NM_000179.2	1076	cGc/cAc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	138	498	0	ENST00000347630.2:c.393G>C	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgC																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925412	114925412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	83	661	0	ENST00000543371.1:c.1490C>T	p.Pro497Leu	p.P497L	ENST00000543371	NM_001198531.1	497	cCg/cTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508733	106508733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	85	501	1	ENST00000359195.3:c.727G>A	p.Ala243Thr	p.A243T	ENST00000359195	NM_002649.2	243	Gcc/Acc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604769	48604769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	57	360	0	ENST00000342988.3:c.1591C>T	p.Arg531Trp	p.R531W	ENST00000342988	NM_005359.5	531	Cgg/Tgg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933575	39933575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs151177114		P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	155	270	0	ENST00000378444.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000378444	NM_001123385.1	342	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432458	49432458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	172	714	2	ENST00000301067.7:c.8681C>T	p.Pro2894Leu	p.P2894L	ENST00000301067	NM_003482.3	2894	cCg/cTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983295	15983295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	55	417	0	ENST00000268712.3:c.3484C>T	p.Arg1162Trp	p.R1162W	ENST00000268712	NM_006311.3	1162	Cgg/Tgg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123310895	123310895	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141796960		P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	119	398	0	ENST00000358487.5:c.533G>A	p.Arg178His	p.R178H	ENST00000358487	NM_000141.4	178	cGc/cAc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798112	45798112	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	174	686	0	ENST00000372115.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000372115	NM_001048171.1	233	Cga/Tga																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851510	63851510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	111	478	0	ENST00000279873.7:c.2288C>T	p.Ser763Leu	p.S763L	ENST00000279873	NM_032199.2	763	tCg/tTg																																																																															
SESN3	143686	MSKCC	GRCh37	11	94911881	94911881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	113	487	1	ENST00000536441.1:c.1049G>A	p.Arg350Gln	p.R350Q	ENST00000536441	NM_144665.3	350	cGa/cAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448147	49448147	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	179	579	0	ENST00000301067.7:c.453del	p.Gln152ArgfsTer56	p.Q152Rfs*56	ENST00000301067	NM_003482.3	151	ggG/gg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99456376	99456376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	31	478	1	ENST00000268035.6:c.1693G>A	p.Gly565Ser	p.G565S	ENST00000268035	NM_000875.3	565	Ggc/Agc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81819704	81819704	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	152	591	1	ENST00000359376.3:c.114delC	p.Glu39SerfsTer7	p.E39Sfs*7	ENST00000359376	NM_002661.3	37	aCc/ac																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953261	17953261	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	149	903	0	ENST00000458235.1:c.725T>G	p.Leu242Arg	p.L242R	ENST00000458235	NM_000215.3	242	cTg/cGg																																																																															
CIC	23152	MSKCC	GRCh37	19	42791238	42791238	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	92	781	0	ENST00000575354.2:c.298G>T	p.Ala100Ser	p.A100S	ENST00000575354	NM_015125.3	100	Gcc/Tcc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944584	40944584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	133	391	0	ENST00000373198.4:c.1918G>T	p.Ala640Ser	p.A640S	ENST00000373198	NM_133170.3	640	Gct/Tct																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815816	32815816	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	187	613	0	ENST00000354258.4:c.1800T>G	p.Asn600Lys	p.N600K	ENST00000354258	NM_000593.5	600	aaT/aaG																																																																															
FYN	2534	MSKCC	GRCh37	6	112017591	112017591	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	125	486	0	ENST00000368678.4:c.922T>C	p.Phe308Leu	p.F308L	ENST00000368678		308	Ttc/Ctc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	75	414	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578457	+	frameshift_variant	Frame_Shift_Del	DEL	GCGC	GCGC	-			P-0029093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	157	687	0	ENST00000269305.4:c.473_476del	p.Arg158ProfsTer11	p.R158Pfs*11	ENST00000269305	NM_001126112.2	158	cGCGCc/cc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372205	55372205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	55	388	1	ENST00000297316.4:c.895G>A	p.Ala299Thr	p.A299T	ENST00000297316	NM_022454.3	299	Gcg/Acg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918675	44918692	+	inframe_deletion	In_Frame_Del	DEL	TACCTCTGCACTTGCAGC	TACCTCTGCACTTGCAGC	-			P-0029093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	54	502	0	ENST00000377967.4:c.1158_1175del	p.Asn386_Ala392delinsLys	p.N386_A392delinsK	ENST00000377967	NM_021140.2	386	aaTACCTCTGCACTTGCAGCa/aaa																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874264	155874264	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	313	558	1	ENST00000368323.3:c.267T>A	p.Tyr89Ter	p.Y89*	ENST00000368323	NM_006912.5	89	taT/taA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	365	766	0	ENST00000269305.4:c.472del	p.Arg158AlafsTer12	p.R158Afs*12	ENST00000269305	NM_001126112.2	158	Cgc/gc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0029107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	40	428	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68857532	68857532	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	C			P-0029107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	33	426	0	ENST00000261769.5:c.2164+3A>C		p.X722_splice	ENST00000261769	NM_004360.3	722																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	34	364	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0029109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	61	426	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0029109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	35	507	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	27	356	0	ENST00000342988.3:c.1081C>A	p.Arg361Ser	p.R361S	ENST00000342988	NM_005359.5	361	Cgc/Agc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42848533	42848533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	52	562	0	ENST00000398585.3:c.809C>T	p.Ser270Leu	p.S270L	ENST00000398585	NM_001135099.1	270	tCa/tTa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	161	450	3	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	176	405	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	304	627	1	ENST00000269305.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTc/aCc																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	47	156	0	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	111	339	2	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	330	701	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	139	385	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																															
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	124	403	0	ENST00000257430.4:c.4393_4394dupAG	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	400	519	2	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239082	98239082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	203	459	1	ENST00000331920.6:c.1561G>A	p.Ala521Thr	p.A521T	ENST00000331920	NM_000264.3	521	Gcc/Acc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	54	314	1	ENST00000375687.4:c.1933_1934dup	p.Gly646ValfsTer58	p.G646Vfs*58	ENST00000375687	NM_015338.5	642	-/GG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	110	471	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	297	695	0	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	116	343	2	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	408	478	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
AR	367	MSKCC	GRCh37	X	66765164	66765164	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	34	142	0	ENST00000374690.3:c.176A>T	p.Gln59Leu	p.Q59L	ENST00000374690	NM_000044.3	59	cAg/cTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939260	71939260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	287	697	0	ENST00000298229.2:c.209G>A	p.Arg70His	p.R70H	ENST00000298229	NM_001567.3	70	cGc/cAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948208	71948209	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	372	934	7	ENST00000298229.2:c.2927dupC	p.Pro977ThrfsTer7	p.P977Tfs*7	ENST00000298229	NM_001567.3	974	gcc/gCcc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089688	27089688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	308	615	1	ENST00000324856.7:c.2644G>A	p.Gly882Arg	p.G882R	ENST00000324856	NM_006015.4	882	Ggg/Agg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101687	27101687	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	68	870	0	ENST00000324856.7:c.4969del	p.Arg1657GlyfsTer5	p.R1657Gfs*5	ENST00000324856	NM_006015.4	1657	Agg/gg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981777	201981778	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	322	711	0	ENST00000359651.3:c.492dup	p.Phe165LeufsTer31	p.F165Lfs*31	ENST00000359651		163	agc/agCc																																																																															
WT1	7490	MSKCC	GRCh37	11	32421542	32421542	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	216	514	0	ENST00000332351.3:c.1050C>A	p.Cys350Ter	p.C350*	ENST00000332351	NM_024426.4	350	tgC/tgA																																																																															
WT1	7490	MSKCC	GRCh37	11	32456500	32456502	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	17	123	0	ENST00000332351.3:c.390_392del	p.Pro136del	p.P136del	ENST00000332351	NM_024426.4	130	ccACCc/ccc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562379	21562379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	250	586	0	ENST00000382592.4:c.1540C>T	p.Pro514Ser	p.P514S	ENST00000382592	NM_014572.2	514	Ccg/Tcg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819299	3819299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	259	646	1	ENST00000262367.5:c.2936C>T	p.Ala979Val	p.A979V	ENST00000262367	NM_004380.2	979	gCc/gTc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67646012	67646013	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	185	447	3	ENST00000264010.4:c.950_951dup	p.Gly318GlnfsTer16	p.G318Qfs*16	ENST00000264010	NM_006565.3	314	aac/aACac																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12044533	12044533	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	186	475	0	ENST00000353533.5:c.1156G>T	p.Asp386Tyr	p.D386Y	ENST00000353533	NM_003010.3	386	Gat/Tat																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40364060	40364060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	138	236	0	ENST00000293328.3:c.1622G>A	p.Ser541Asn	p.S541N	ENST00000293328	NM_012448.3	541	aGc/aAc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40498603	40498603	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	37	399	0	ENST00000264657.5:c.257T>C	p.Ile86Thr	p.I86T	ENST00000264657	NM_139276.2	86	aTc/aCc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118934	70118934	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	302	815	0	ENST00000245479.2:c.506A>G	p.His169Arg	p.H169R	ENST00000245479	NM_000346.3	169	cAc/cGc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39609310	39609310	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	119	285	0	ENST00000262039.4:c.1612A>G	p.Met538Val	p.M538V	ENST00000262039	NM_002647.2	538	Atg/Gtg																																																																															
ALK	238	MSKCC	GRCh37	2	29551222	29551222	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	233	572	0	ENST00000389048.3:c.1408A>G	p.Met470Val	p.M470V	ENST00000389048	NM_004304.4	470	Atg/Gtg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31389170	31389170	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	230	576	0	ENST00000328111.2:c.2083A>G	p.Met695Val	p.M695V	ENST00000328111	NM_006892.3	695	Atg/Gtg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934211	49934211	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	316	766	0	ENST00000296474.3:c.2296T>C	p.Tyr766His	p.Y766H	ENST00000296474	NM_002447.2	766	Tac/Cac																																																																															
ATR	545	MSKCC	GRCh37	3	142231299	142231299	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	176	391	0	ENST00000350721.4:c.4655T>A	p.Ile1552Asn	p.I1552N	ENST00000350721	NM_001184.3	1552	aTt/aAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245352	153245352	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	176	541	1	ENST00000281708.4:c.1839T>A	p.Cys613Ter	p.C613*	ENST00000281708	NM_033632.3	613	tgT/tgA																																																																															
SESN1	27244	MSKCC	GRCh37	6	109322563	109322563	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	242	664	1	ENST00000436639.2:c.474A>T	p.Leu158Phe	p.L158F	ENST00000436639	NM_014454.2	158	ttA/ttT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710800	117710800	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	144	420	0	ENST00000368508.3:c.1472T>C	p.Leu491Pro	p.L491P	ENST00000368508	NM_002944.2	491	cTa/cCa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026709	6026709	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	279	817	0	ENST00000265849.7:c.1687C>T	p.Arg563Ter	p.R563*	ENST00000265849	NM_000535.5	563	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845958	151845959	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	193	581	0	ENST00000262189.6:c.13053dupA	p.Trp4352MetfsTer17	p.W4352Mfs*17	ENST00000262189	NM_170606.2	4351	-/A																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964514	70964514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	220	618	0	ENST00000276594.2:c.1514G>A	p.Arg505His	p.R505H	ENST00000276594	NM_024504.3	505	cGc/cAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412261	63412262	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	289	423	0	ENST00000330258.3:c.905dup	p.Asn302LysfsTer22	p.N302Kfs*22	ENST00000330258	NM_152424.3	302	aat/aaAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0029119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	180	458	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0029119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	81	455	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175951	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	74	301	0	ENST00000257430.4:c.4660G>T	p.Glu1554Ter	p.E1554*	ENST00000257430	NM_000038.5	1554	Gaa/Taa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685308	89685308	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	74	309	1	ENST00000371953.3:c.203A>G	p.Tyr68Cys	p.Y68C	ENST00000371953	NM_000314.4	68	tAc/tGc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732981	30732981	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	158	363	0	ENST00000359013.4:c.1669C>T	p.Gln557Ter	p.Q557*	ENST00000359013	NM_001024847.2	557	Cag/Tag																																																																															
RHOA	387	MSKCC	GRCh37	3	49405962	49405962	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	118	598	0	ENST00000418115.1:c.176A>G	p.Asp59Gly	p.D59G	ENST00000418115	NM_001664.2	59	gAc/gGc																																																																															
CCND1	595	MSKCC	GRCh37	11	69466000	69466000	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	157	826	2	ENST00000227507.2:c.838G>T	p.Glu280Ter	p.E280*	ENST00000227507	NM_053056.2	280	Gag/Tag																																																																															
MITF	4286	MSKCC	GRCh37	3	69928358	69928358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	66	444	0	ENST00000352241.4:c.178C>T	p.Arg60Cys	p.R60C	ENST00000352241	NM_198159.2	60	Cgc/Tgc																																																																															
TET1	80312	MSKCC	GRCh37	10	70404633	70404633	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	109	687	0	ENST00000373644.4:c.2147C>A	p.Ser716Ter	p.S716*	ENST00000373644	NM_030625.2	716	tCa/tAa																																																																															
BLM	641	MSKCC	GRCh37	15	91326125	91326125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	80	478	0	ENST00000355112.3:c.2629G>T	p.Asp877Tyr	p.D877Y	ENST00000355112	NM_000057.2	877	Gat/Tat																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348962	89348962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	139	737	1	ENST00000301030.4:c.3988G>A	p.Gly1330Arg	p.G1330R	ENST00000301030	NM_001256183.1	1330	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112103078	112103081	+	frameshift_variant	Frame_Shift_Del	DEL	AGAA	AGAA	-			P-0029119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	46	322	0	ENST00000257430.4:c.416_419del	p.Lys139ArgfsTer30	p.K139Rfs*30	ENST00000257430	NM_000038.5	138	gAGAAa/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0029122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	157	478	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
MSI1	4440	MSKCC	GRCh37	12	120784005	120784005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	276	836	0	ENST00000257552.2:c.980C>T	p.Ser327Leu	p.S327L	ENST00000257552	NM_002442.3	327	tCg/tTg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028627	12028628	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	141	370	0	ENST00000353533.5:c.832dup	p.Ser278LysfsTer8	p.S278Kfs*8	ENST00000353533	NM_003010.3	277	cca/ccAa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176709524	176709524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	66	371	0	ENST00000439151.2:c.5951G>T	p.Arg1984Leu	p.R1984L	ENST00000439151	NM_022455.4	1984	cGa/cTa																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935543	13935543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	113	272	0	ENST00000405192.2:c.1313C>T	p.Pro438Leu	p.P438L	ENST00000405192	NM_001163147.1	438	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	84	392	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	139	402	0	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1207059	1207059	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	219	656	0	ENST00000326873.7:c.148del	p.Leu50Ter	p.L50*	ENST00000326873	NM_000455.4	49	taC/ta																																																																															
ERF	2077	MSKCC	GRCh37	19	42753374	42753374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	83	746	0	ENST00000222329.4:c.890C>T	p.Ser297Leu	p.S297L	ENST00000222329	NM_006494.2	297	tCa/tTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0029142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	222	462	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
RB1	5925	MSKCC	GRCh37	13	49039247	49039247	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0029142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	41	450	0	ENST00000267163.4:c.2325G>T	p.Arg775Ser	p.R775S	ENST00000267163	NM_000321.2	775	agG/agT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578554	7578571	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTGTAGGAAGAGGAAGG	ACTGTAGGAAGAGGAAGG	GCAGA			P-0029142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	150	727	1	ENST00000269305.4:c.376-17_376delinsTCTGC		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0029143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	201	537	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0029143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	79	195	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	485	614	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41400138	41400138	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs755588862		P-0029143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	361	484	0	ENST00000373198.4:c.621G>C	p.Gln207His	p.Q207H	ENST00000373198	NM_133170.3	207	caG/caC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432430	49432430	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	46	600	0	ENST00000301067.7:c.8709A>T	p.Arg2903Ser	p.R2903S	ENST00000301067	NM_003482.3	2903	agA/agT																																																																															
APC	324	MSKCC	GRCh37	5	112174491	112174491	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	108	334	0	ENST00000257430.4:c.3201del	p.Gln1067HisfsTer59	p.Q1067Hfs*59	ENST00000257430	NM_000038.5	1067	cAa/ca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928072	178928098	+	inframe_deletion	In_Frame_Del	DEL	TGGATTAGAAGATTTGCTGAACCCTAT	TGGATTAGAAGATTTGCTGAACCCTAT	-			P-0029146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	178	396	0	ENST00000263967.3:c.1353_1379del	p.Leu452_Gly460del	p.L452_G460del	ENST00000263967	NM_006218.2	450	caTGGATTAGAAGATTTGCTGAACCCTATt/cat																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	228	360	0	ENST00000361445.4:c.5930C>T	p.Thr1977Ile	p.T1977I	ENST00000361445	NM_004958.3	1977	aCa/aTa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913476		P-0029146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	303	356	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467677	66467677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	212	321	0	ENST00000273854.3:c.592G>A	p.Glu198Lys	p.E198K	ENST00000273854	NM_004439.5	198	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	49	409	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	116	559	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
NF1	4763	MSKCC	GRCh37	17	29683984	29683985	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	33	393	0	ENST00000358273.4:c.7747_7748del	p.Arg2583AspfsTer12	p.R2583Dfs*12	ENST00000358273	NM_001042492.2	2582	cAG/c																																																																															
RB1	5925	MSKCC	GRCh37	13	48955472	48955473	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	50	390	0	ENST00000267163.4:c.1589_1590del	p.Lys530SerfsTer24	p.K530Sfs*24	ENST00000267163	NM_000321.2	530	AAa/a																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38614536	38614536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	57	509	0	ENST00000299084.4:c.303del	p.Thr102ArgfsTer19	p.T102Rfs*19	ENST00000299084	NM_152594.2	101	cTt/ct																																																																															
MGA	23269	MSKCC	GRCh37	15	42003406	42003406	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	80	484	0	ENST00000219905.7:c.2945del	p.Gly982GlufsTer12	p.G982Efs*12	ENST00000219905	NM_001164273.1	981	caG/ca																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88726703	88726703	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	39	400	0	ENST00000360948.2:c.341G>T	p.Gly114Val	p.G114V	ENST00000360948	NM_001012338.2	114	gGa/gTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29556192	29556193	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	CT			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	19	153	0	ENST00000358273.4:c.2559_2560delinsCT	p.Gln853_Gln854delinsHisTer	p.Q853_Q854delinsH*	ENST00000358273	NM_001042492.2	853	caGCag/caCTag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170487	11170489	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs1375203306		P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	86	621	0	ENST00000344626.4:c.4696_4698del	p.Lys1566del	p.K1566del	ENST00000344626	NM_003072.3	1565	gAGAag/gag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281554	15281554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	96	669	0	ENST00000263388.2:c.4819G>T	p.Ala1607Ser	p.A1607S	ENST00000263388	NM_000435.2	1607	Gcc/Tcc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225400285	225400285	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	30	242	0	ENST00000264414.4:c.338A>T	p.Gln113Leu	p.Q113L	ENST00000264414	NM_003590.4	113	cAa/cTa																																																																															
TP63	8626	MSKCC	GRCh37	3	189586389	189586389	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	37	338	1	ENST00000264731.3:c.1013G>T	p.Arg338Leu	p.R338L	ENST00000264731	NM_003722.4	338	cGc/cTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1254594	1254594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	177	559	1	ENST00000310581.5:c.3184G>T	p.Ala1062Ser	p.A1062S	ENST00000310581	NM_198253.2	1062	Gcc/Tcc																																																																															
MSH3	4437	MSKCC	GRCh37	5	80088596	80088596	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	49	422	0	ENST00000265081.6:c.2589del	p.Arg863SerfsTer4	p.R863Sfs*4	ENST00000265081	NM_002439.4	863	aGg/ag																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149441123	149441123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	171	666	0	ENST00000286301.3:c.1789G>T	p.Val597Leu	p.V597L	ENST00000286301	NM_005211.3	597	Gtg/Ttg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149514562	149514563	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	43	308	0	ENST00000261799.4:c.381_382insT	p.Leu128SerfsTer3	p.L128Sfs*3	ENST00000261799	NM_002609.3	127	-/T																																																																															
PMS2	5395	MSKCC	GRCh37	7	6038846	6038846	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	58	501	0	ENST00000265849.7:c.598G>T	p.Val200Leu	p.V200L	ENST00000265849	NM_000535.5	200	Gta/Tta																																																																															
SMO	6608	MSKCC	GRCh37	7	128845188	128845188	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	71	588	0	ENST00000249373.3:c.682C>A	p.Gln228Lys	p.Q228K	ENST00000249373	NM_005631.4	228	Cag/Aag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239666	53239666	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	92	304	0	ENST00000375401.3:c.1676G>T	p.Ser559Ile	p.S559I	ENST00000375401	NM_004187.3	559	aGc/aTc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	213	415	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112915524	112915524	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	196	370	1	ENST00000351677.2:c.923A>G	p.Asn308Ser	p.N308S	ENST00000351677	NM_002834.3	308	aAt/aGt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735533	40735533	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	160	423	0	ENST00000373198.4:c.3340A>G	p.Ile1114Val	p.I1114V	ENST00000373198	NM_133170.3	1114	Att/Gtt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47679312	47679312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3507	189	344	0	ENST00000347630.2:c.895G>A	p.Val299Met	p.V299M	ENST00000347630	NM_001007230.1	299	Gtg/Atg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0029152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	128	414	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	224	730	0	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag																																																																															
MAX	4149	MSKCC	GRCh37	14	65560425	65560425	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0029152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	67	264	0	ENST00000358664.4:c.171+1G>T		p.X57_splice	ENST00000358664	NM_002382.4	57																																																																																
FGFR2	2263	MSKCC	GRCh37	10	123244975	123244975	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	185	597	1	ENST00000358487.5:c.2129A>T	p.Glu710Val	p.E710V	ENST00000358487	NM_000141.4	710	gAg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578315	7578493	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCC	AGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCC	-			P-0029152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	224	495	0	ENST00000269305.4:c.437_560-26del		p.X146_splice	ENST00000269305	NM_001126112.2	146																																																																																
TET2	54790	MSKCC	GRCh37	4	106193884	106193885	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	104	358	0	ENST00000380013.4:c.4350dup	p.Arg1451SerfsTer27	p.R1451Sfs*27	ENST00000380013	NM_001127208.2	1449	tct/tcTt																																																																															
JUN	3725	MSKCC	GRCh37	1	59247804	59247805	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0029153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	183	714	0	ENST00000371222.2:c.937_938dup	p.Met313IlefsTer2	p.M313Ifs*2	ENST00000371222	NM_002228.3	313	atg/atATg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18644395	18644395	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	78	242	0	ENST00000266497.5:c.2573A>C	p.Lys858Thr	p.K858T	ENST00000266497		858	aAg/aCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0029153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	199	429	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	282	634	1	ENST00000326873.7:c.842dup	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggCc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46266401	46266401	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	105	318	0	ENST00000371998.3:c.2386G>T	p.Asp796Tyr	p.D796Y	ENST00000371998		796	Gac/Tac																																																																															
PREX2	80243	MSKCC	GRCh37	8	68942753	68942753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	195	476	3	ENST00000288368.4:c.565C>T	p.Arg189Trp	p.R189W	ENST00000288368	NM_024870.2	189	Cgg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0029158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	25	400	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0029158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	36	596	0	ENST00000269305.4:c.560-2A>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	127	507	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133241978	133241978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	185	560	0	ENST00000320574.5:c.2378G>T	p.Arg793Leu	p.R793L	ENST00000320574	NM_006231.2	793	cGc/cTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220493	1220497	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGT	GGCGT	-			P-0029165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	207	703	0	ENST00000326873.7:c.589_593del	p.Val197ArgfsTer67	p.V197Rfs*67	ENST00000326873	NM_000455.4	196	GGCGTg/g																																																																															
GNA11	2767	MSKCC	GRCh37	19	3094695	3094695	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	109	309	0	ENST00000078429.4:c.46A>T	p.Lys16Ter	p.K16*	ENST00000078429	NM_002067.2	16	Aag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602620	10602620	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	197	680	0	ENST00000171111.5:c.958del	p.Arg320GlyfsTer8	p.R320Gfs*8	ENST00000171111	NM_203500.1	320	Cgg/gg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139802655	139802655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	164	499	0	ENST00000247668.2:c.500G>T	p.Arg167Leu	p.R167L	ENST00000247668	NM_021138.3	167	cGg/cTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70342362	70342362	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	182	531	0	ENST00000374080.3:c.1253G>T	p.Arg418Leu	p.R418L	ENST00000374080		418	cGt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	406	508	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578552	7578552	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0029168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	441	793	1	ENST00000269305.4:c.378C>A	p.Tyr126Ter	p.Y126*	ENST00000269305	NM_001126112.2	126	taC/taA																																																																															
MLH1	4292	MSKCC	GRCh37	3	37053347	37053348	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	150	467	0	ENST00000231790.2:c.588dupA	p.Gln197ThrfsTer7	p.Q197Tfs*7	ENST00000231790	NM_000249.3	194	-/A																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	19	416	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	77	661	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RARA	5914	MSKCC	GRCh37	17	38512383	38512383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	22	469	1	ENST00000254066.5:c.1294C>T	p.Arg432Trp	p.R432W	ENST00000254066	NM_000964.3	432	Cgg/Tgg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417921	138417921	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	40	456	0	ENST00000289153.2:c.1598del	p.Lys533SerfsTer6	p.K533Sfs*6	ENST00000289153	NM_006219.2	533	aAg/ag																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	44	462	1	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	33	283	0	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct																																																																															
CDH1	999	MSKCC	GRCh37	16	68849663	68849663	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	35	462	0	ENST00000261769.5:c.1565+1G>A		p.X522_splice	ENST00000261769	NM_004360.3	522																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89521664	89521664	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17801309		P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	31	513	0	ENST00000336596.2:c.2741G>A	p.Arg914His	p.R914H	ENST00000336596	NM_005233.5	914	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573505	48573506	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	27	395	0	ENST00000342988.3:c.94_95delAG	p.Ser32Ter	p.S32*	ENST00000342988	NM_005359.5	30	gGA/g																																																																															
FLT4	2324	MSKCC	GRCh37	5	180055897	180055897	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	43	590	0	ENST00000261937.6:c.1088del	p.Pro363ArgfsTer27	p.P363Rfs*27	ENST00000261937	NM_182925.4	363	cCg/cg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	50	730	2	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	33	383	4	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508535	106508535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	19	295	0	ENST00000359195.3:c.529C>T	p.Arg177Cys	p.R177C	ENST00000359195	NM_002649.2	177	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	84	519	2	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																															
ALK	238	MSKCC	GRCh37	2	30143052	30143052	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	37	717	1	ENST00000389048.3:c.474del	p.Glu160ArgfsTer26	p.E160Rfs*26	ENST00000389048	NM_004304.4	158	ccC/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	57	787	0	ENST00000269305.4:c.388del	p.Leu130SerfsTer40	p.L130Sfs*40	ENST00000269305	NM_001126112.2	130	Ctc/tc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67663406	67663406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	33	426	0	ENST00000264010.4:c.1807C>T	p.Arg603Cys	p.R603C	ENST00000264010	NM_006565.3	603	Cgc/Tgc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	43	544	3	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433388	49433388	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	34	702	2	ENST00000301067.7:c.8059C>T	p.Arg2687Ter	p.R2687*	ENST00000301067	NM_003482.3	2687	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862845	9862845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	34	613	0	ENST00000330684.3:c.2458G>A	p.Val820Ile	p.V820I	ENST00000330684	NM_001134407.1	820	Gta/Ata																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38139044	38139044	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	51	606	1	ENST00000317025.8:c.3559C>T	p.Arg1187Ter	p.R1187*	ENST00000317025	NM_023034.1	1187	Cga/Tga																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743940	46743940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	41	428	1	ENST00000371975.4:c.2230C>T	p.Arg744Trp	p.R744W	ENST00000371975	NM_003579.3	744	Cgg/Tgg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146944	38146945	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	77	725	2	ENST00000317025.8:c.3197dup	p.Asn1066LysfsTer14	p.N1066Kfs*14	ENST00000317025	NM_023034.1	1066	aac/aaAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42052635	42052635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	58	532	1	ENST00000219905.7:c.7306C>T	p.Arg2436Cys	p.R2436C	ENST00000219905	NM_001164273.1	2436	Cgt/Tgt																																																																															
EZH2	2146	MSKCC	GRCh37	7	148544344	148544344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	45	571	0	ENST00000320356.2:c.47G>A	p.Arg16Gln	p.R16Q	ENST00000320356	NM_004456.4	16	cGg/cAg																																																																															
AR	367	MSKCC	GRCh37	X	66941680	66941680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	32	536	0	ENST00000374690.3:c.2324G>A	p.Arg775His	p.R775H	ENST00000374690	NM_000044.3	775	cGc/cAc																																																																															
TET1	80312	MSKCC	GRCh37	10	70411605	70411605	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	32	401	1	ENST00000373644.4:c.4279C>T	p.Arg1427Ter	p.R1427*	ENST00000373644	NM_030625.2	1427	Cga/Tga																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649874	88649875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	23	411	0	ENST00000372037.3:c.128dup	p.Ser44ValfsTer27	p.S44Vfs*27	ENST00000372037	NM_004329.2	41	-/A																																																																															
SESN3	143686	MSKCC	GRCh37	11	94911057	94911057	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	43	639	0	ENST00000536441.1:c.1073del	p.Asn358IlefsTer7	p.N358Ifs*7	ENST00000536441	NM_144665.3	358	aAt/at																																																																															
PGR	5241	MSKCC	GRCh37	11	100999138	100999138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	40	632	0	ENST00000325455.5:c.664G>A	p.Glu222Lys	p.E222K	ENST00000325455	NM_001202474.3	222	Gag/Aag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343443	118343445	+	inframe_deletion	In_Frame_Del	DEL	TAA	TAA	-			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	24	444	0	ENST00000534358.1:c.1570_1572del	p.Asn524del	p.N524del	ENST00000534358	NM_005933.3	523	agTAAt/agt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988573	36988573	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	56	705	0	ENST00000354822.5:c.80G>A	p.Arg27His	p.R27H	ENST00000354822	NM_001079668.2	27	cGc/cAc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658691	3658691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	80	815	0	ENST00000294008.3:c.275G>A	p.Arg92Lys	p.R92K	ENST00000294008	NM_032444.2	92	aGg/aAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984790	72984790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	34	543	1	ENST00000268489.5:c.2794G>A	p.Glu932Lys	p.E932K	ENST00000268489	NM_006885.3	932	Gag/Aag																																																																															
INSR	3643	MSKCC	GRCh37	19	7141797	7141797	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201466857		P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	56	643	1	ENST00000302850.5:c.2573C>T	p.Thr858Met	p.T858M	ENST00000302850	NM_000208.2	858	aCg/aTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211183	36211183	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	77	899	0	ENST00000222270.7:c.939del	p.Val314Ter	p.V314*	ENST00000222270	NM_014727.1	312	Aaa/aa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101152	41101153	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	34	571	0	ENST00000373198.4:c.1203dup	p.Gln402AlafsTer18	p.Q402Afs*18	ENST00000373198	NM_133170.3	401	-/G																																																																															
ATR	545	MSKCC	GRCh37	3	142268420	142268420	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	37	458	0	ENST00000350721.4:c.3072T>G	p.Asn1024Lys	p.N1024K	ENST00000350721	NM_001184.3	1024	aaT/aaG																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540533	187540533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	31	378	0	ENST00000441802.2:c.7207G>A	p.Ala2403Thr	p.A2403T	ENST00000441802	NM_005245.3	2403	Gcc/Acc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526393	31526393	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	54	972	0	ENST00000344624.3:c.647C>A	p.Pro216His	p.P216H	ENST00000344624		216	cCc/cAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057717	180057717	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	47	646	0	ENST00000261937.6:c.238delG	p.Val80TrpfsTer53	p.V80Wfs*53	ENST00000261937	NM_182925.4	80	Gtg/tg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681423	30681423	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	30	425	0	ENST00000376406.3:c.587+2T>C		p.X196_splice	ENST00000376406	NM_014641.2	196																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32181986	32181986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	52	741	0	ENST00000375023.3:c.2068G>T	p.Ala690Ser	p.A690S	ENST00000375023	NM_004557.3	690	Gca/Tca																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200189	138200189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	29	481	0	ENST00000237289.4:c.1607G>A	p.Cys536Tyr	p.C536Y	ENST00000237289	NM_001270507.1	536	tGc/tAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98221972	98221972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	35	456	1	ENST00000331920.6:c.2797G>A	p.Ala933Thr	p.A933T	ENST00000331920	NM_000264.3	933	Gcg/Acg																																																																															
ATRX	546	MSKCC	GRCh37	X	76907789	76907789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	19	306	0	ENST00000373344.5:c.4372G>A	p.Glu1458Lys	p.E1458K	ENST00000373344	NM_000489.3	1458	Gag/Aag																																																																															
ATRX	546	MSKCC	GRCh37	X	76938055	76938055	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	54	635	0	ENST00000373344.5:c.2693A>G	p.Asp898Gly	p.D898G	ENST00000373344	NM_000489.3	898	gAc/gGc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12037444	12037444	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	426	479	0	ENST00000396373.4:c.1075C>T	p.Arg359Ter	p.R359*	ENST00000396373	NM_001987.4	359	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573627	48573627	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	185	318	0	ENST00000342988.3:c.211T>C	p.Cys71Arg	p.C71R	ENST00000342988	NM_005359.5	71	Tgt/Cgt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11106932	11106932	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	247	639	0	ENST00000344626.4:c.1637A>G	p.Lys546Arg	p.K546R	ENST00000344626	NM_003072.3	546	aAg/aGg																																																																															
ATR	545	MSKCC	GRCh37	3	142274734	142274734	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	159	336	0	ENST00000350721.4:c.2326A>G	p.Ser776Gly	p.S776G	ENST00000350721	NM_001184.3	776	Agt/Ggt																																																																															
ATR	545	MSKCC	GRCh37	3	142274749	142274749	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	142	355	1	ENST00000350721.4:c.2311A>G	p.Lys771Glu	p.K771E	ENST00000350721	NM_001184.3	771	Aaa/Gaa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53246392	53246392	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	280	604	0	ENST00000375401.3:c.590del	p.Leu197HisfsTer37	p.L197Hfs*37	ENST00000375401	NM_004187.3	197	cTa/ca																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031885	26031885	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	71	219	0	ENST00000244661.2:c.404G>C	p.Arg135Thr	p.R135T	ENST00000244661	NM_003537.3	135	aGa/aCa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575049	64575049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	114	487	0	ENST00000337652.1:c.773C>T	p.Ser258Leu	p.S258L	ENST00000337652	NM_130803.2	258	tCg/tTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557891	187557891	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200242253		P-0029177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	39	452	0	ENST00000441802.2:c.3820G>A	p.Val1274Ile	p.V1274I	ENST00000441802	NM_005245.3	1274	Gtc/Atc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856020	111856020	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1263604332		P-0029177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	119	575	0	ENST00000341259.2:c.71G>A	p.Arg24Gln	p.R24Q	ENST00000341259	NM_005475.2	24	cGg/cAg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	472168	472168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	110	563	0	ENST00000399788.2:c.633G>A	p.Met211Ile	p.M211I	ENST00000399788	NM_001042603.1	211	atG/atA																																																																															
RECQL	5965	MSKCC	GRCh37	12	21636329	21636329	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	81	538	0	ENST00000421138.2:c.681G>A	p.Trp227Ter	p.W227*	ENST00000421138		227	tgG/tgA																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021503	31021503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	99	538	0	ENST00000375687.4:c.1502C>T	p.Ser501Phe	p.S501F	ENST00000375687	NM_015338.5	501	tCt/tTt																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62320457	62320457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	102	660	0	ENST00000508582.2:c.1922C>T	p.Ala641Val	p.A641V	ENST00000508582		641	gCc/gTc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204689	128204689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	314	797	2	ENST00000341105.2:c.752C>T	p.Ser251Phe	p.S251F	ENST00000341105	NM_032638.4	251	tCc/tTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286179	66286179	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	38	362	1	ENST00000273854.3:c.1507G>C	p.Glu503Gln	p.E503Q	ENST00000273854	NM_004439.5	503	Gaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0029178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	693	837	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519922		P-0029178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	694	805	1	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717661	89717661	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0029178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	632	693	1	ENST00000371953.3:c.686C>G	p.Ser229Ter	p.S229*	ENST00000371953	NM_000314.4	229	tCa/tGa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095722	178095722	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	472	493	0	ENST00000397062.3:c.1609G>C	p.Glu537Gln	p.E537Q	ENST00000397062	NM_006164.4	537	Gaa/Caa																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165755	118165755	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	181	492	0	ENST00000369448.3:c.265A>G	p.Lys89Glu	p.K89E	ENST00000369448	NM_017709.3	89	Aaa/Gaa																																																																															
PARP1	142	MSKCC	GRCh37	1	226573204	226573204	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0029178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	268	533	36	ENST00000366794.5:c.1011+1G>T		p.X337_splice	ENST00000366794	NM_001618.3	337																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49442929	49442929	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	313	764	0	ENST00000301067.7:c.3979del	p.Ala1327ProfsTer3	p.A1327Pfs*3	ENST00000301067	NM_003482.3	1327	Gcc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579445	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	GTAGGAGCTGCTGGTGCAG	GTAGGAGCTGCTGGTGCAG	-			P-0029178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	748	898	0	ENST00000269305.4:c.224_242del	p.Pro75HisfsTer42	p.P75Hfs*42	ENST00000269305	NM_001126112.2	75	cCTGCACCAGCAGCTCCTACa/ca																																																																															
NF1	4763	MSKCC	GRCh37	17	29667636	29667655	+	frameshift_variant	Frame_Shift_Del	DEL	AGATAGTCTCCGTATATTCA	AGATAGTCTCCGTATATTCA	-			P-0029178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	404	627	0	ENST00000358273.4:c.7036_7055del	p.Asp2346Ter	p.D2346*	ENST00000358273	NM_001042492.2	2345	ttAGATAGTCTCCGTATATTCAat/ttat																																																																															
CUL3	8452	MSKCC	GRCh37	2	225370818	225370818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	473	590	2	ENST00000264414.4:c.1061G>T	p.Arg354Leu	p.R354L	ENST00000264414	NM_003590.4	354	cGc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	351	535	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	105	773	0	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag																																																																															
CDK8	1024	MSKCC	GRCh37	13	26911754	26911754	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	22	554	0	ENST00000381527.3:c.179C>G	p.Ser60Cys	p.S60C	ENST00000381527	NM_001260.1	60	tCt/tGt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193172944	193172944	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	51	430	0	ENST00000367435.3:c.992A>T	p.Lys331Met	p.K331M	ENST00000367435	NM_024529.4	331	aAg/aTg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94204851	94204851	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	59	487	2	ENST00000323929.3:c.734A>G	p.His245Arg	p.H245R	ENST00000323929	NM_005591.3	245	cAt/cGt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658877	3658877	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	72	659	0	ENST00000294008.3:c.89C>G	p.Ser30Cys	p.S30C	ENST00000294008	NM_032444.2	30	tCc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574025	7574026	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0029179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	77	702	1	ENST00000269305.4:c.1001_1002delinsTT	p.Gly334Val	p.G334V	ENST00000269305	NM_001126112.2	334	gGG/gTT																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108632	8108632	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	70	793	0	ENST00000585124.1:c.763G>C	p.Asp255His	p.D255H	ENST00000585124	NM_004217.3	255	Gat/Cat																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16049823	16049823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	58	399	0	ENST00000268712.3:c.949G>T	p.Ala317Ser	p.A317S	ENST00000268712	NM_006311.3	317	Gca/Tca																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22127188	22127188	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	59	545	0	ENST00000215832.6:c.940G>C	p.Glu314Gln	p.E314Q	ENST00000215832	NM_002745.4	314	Gag/Cag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189881	66189881	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	30	476	0	ENST00000273854.3:c.3065G>T	p.Ser1022Ile	p.S1022I	ENST00000273854	NM_004439.5	1022	aGc/aTc																																																																															
APC	324	MSKCC	GRCh37	5	112177748	112177748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	27	484	1	ENST00000257430.4:c.6457G>A	p.Asp2153Asn	p.D2153N	ENST00000257430	NM_000038.5	2153	Gat/Aat																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412073	63412073	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	64	895	0	ENST00000330258.3:c.1094A>G	p.Tyr365Cys	p.Y365C	ENST00000330258	NM_152424.3	365	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	173	472	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46124999	46124999	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0029180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	38	266	0	ENST00000334344.6:c.187-1G>T		p.X63_splice	ENST00000334344	NM_152641.2	63																																																																																
H3F3C	440093	MSKCC	GRCh37	12	31944971	31944971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	110	700	0	ENST00000340398.3:c.130G>A	p.Gly44Arg	p.G44R	ENST00000340398	NM_001013699.2	44	Ggg/Agg																																																																															
INSR	3643	MSKCC	GRCh37	19	7170556	7170556	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	69	434	0	ENST00000302850.5:c.1475A>T	p.Gln492Leu	p.Q492L	ENST00000302850	NM_000208.2	492	cAg/cTg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468275	50468275	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	214	566	2	ENST00000331340.3:c.1510G>T	p.Glu504Ter	p.E504*	ENST00000331340	NM_006060.4	504	Gag/Tag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8436603	8436603	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	208	515	0	ENST00000356435.5:c.4075C>T	p.Gln1359Ter	p.Q1359*	ENST00000356435		1359	Cag/Tag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39916458	39916458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	228	755	0	ENST00000378444.4:c.4545C>A	p.His1515Gln	p.H1515Q	ENST00000378444	NM_001123385.1	1515	caC/caA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411513	63411513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	311	843	0	ENST00000330258.3:c.1654G>T	p.Gly552Trp	p.G552W	ENST00000330258	NM_152424.3	552	Ggg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0029215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	835	626	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0029215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	159	253	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
AXL	558	MSKCC	GRCh37	19	41762430	41762430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	440	663	0	ENST00000301178.4:c.2110C>T	p.Arg704Cys	p.R704C	ENST00000301178	NM_021913.4	704	Cgc/Tgc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184052	56184052	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0029215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	83	308	0	ENST00000399503.3:c.4258-1G>C		p.X1420_splice	ENST00000399503	NM_005921.1	1420																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11144859	11144859	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	66	661	0	ENST00000344626.4:c.3934G>T	p.Glu1312Ter	p.E1312*	ENST00000344626	NM_003072.3	1312	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600429	10600429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1184	104	767	0	ENST00000171111.5:c.1426G>T	p.Gly476Trp	p.G476W	ENST00000171111	NM_203500.1	476	Ggg/Tgg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15971423	15971423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	55	603	0	ENST00000268712.3:c.4526C>T	p.Ser1509Phe	p.S1509F	ENST00000268712	NM_006311.3	1509	tCt/tTt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226283	2226284	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0029224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	90	754	0	ENST00000398665.3:c.3763_3764del	p.Lys1255ValfsTer49	p.K1255Vfs*49	ENST00000398665	NM_032482.2	1255	AAg/g																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266516	41266516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	52	424	0	ENST00000349496.5:c.313G>A	p.Glu105Lys	p.E105K	ENST00000349496	NM_001904.3	105	Gag/Aag																																																																															
STAG2	10735	MSKCC	GRCh37	X	123200075	123200076	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	46	243	0	ENST00000218089.9:c.2148dup	p.Lys717GlufsTer11	p.K717Efs*11	ENST00000218089	NM_001042749.1	716	ttg/ttGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0029237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	68	563	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	41	362	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	54	699	1	ENST00000269305.4:c.770T>A	p.Leu257Gln	p.L257Q	ENST00000269305	NM_001126112.2	257	cTg/cAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40747087	40747087	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	82	601	0	ENST00000373198.4:c.2995T>A	p.Ser999Thr	p.S999T	ENST00000373198	NM_133170.3	999	Tcc/Acc																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127920582	127920582	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140793926		P-0029237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	66	662	1	ENST00000373547.4:c.317G>A	p.Arg106His	p.R106H	ENST00000373547	NM_002721.4	106	cGt/cAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910401	32910401	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0029237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	40	331	0	ENST00000380152.3:c.1910-1G>T		p.X637_splice	ENST00000380152		637																																																																																
MGA	23269	MSKCC	GRCh37	15	41988359	41988360	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	85	596	0	ENST00000219905.7:c.1151_1152insT	p.Glu384AspfsTer5	p.E384Dfs*5	ENST00000219905	NM_001164273.1	384	gaa/gaTa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41268766	41268766	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	236	532	0	ENST00000349496.5:c.1004A>C	p.Lys335Thr	p.K335T	ENST00000349496	NM_001904.3	335	aAa/aCa																																																																															
NUF2	83540	MSKCC	GRCh37	1	163325254	163325338	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	ACCTGATTAACAAAATTACATGTCTTTTTGTAAATGGCTTGCCATCTTTTAATTTTCTATTTAGAAAGAAAAGTTGAAGCGAATG	ACCTGATTAACAAAATTACATGTCTTTTTGTAAATGGCTTGCCATCTTTTAATTTTCTATTTAGAAAGAAAAGTTGAAGCGAATG	CA			P-0029243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	34	359	2	ENST00000271452.3:c.1390_*79delinsCA		p.*464*	ENST00000271452	NM_145697.2	464																																																																																
TBX3	6926	MSKCC	GRCh37	12	115112242	115112242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	106	190	1	ENST00000257566.3:c.1498G>A	p.Gly500Ser	p.G500S	ENST00000257566	NM_016569.3	500	Ggc/Agc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225339029	225339029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	65	572	0	ENST00000264414.4:c.2240G>A	p.Gly747Glu	p.G747E	ENST00000264414	NM_003590.4	747	gGa/gAa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98268721	98268722	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTC			P-0029243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	130	454	0	ENST00000331920.6:c.361_362insGAGC	p.Leu121ArgfsTer20	p.L121Rfs*20	ENST00000331920	NM_000264.3	121	ctc/cGAGCtc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911462	101911462	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	82	273	0	ENST00000374994.4:c.1387G>A	p.Ala463Thr	p.A463T	ENST00000374994	NM_004612.2	463	Gcc/Acc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	247	462	4	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139411726	139411726	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	46	474	0	ENST00000277541.6:c.1553C>T	p.Thr518Met	p.T518M	ENST00000277541	NM_017617.3	518	aCg/aTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	646	548	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	266	473	1	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	109	322	2	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	106	233	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103755	47103756	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	302	413	1	ENST00000409792.3:c.6190_6191delGA	p.Asp2064ProfsTer8	p.D2064Pfs*8	ENST00000409792	NM_014159.6	2064	GAc/c																																																																															
FLT1	2321	MSKCC	GRCh37	13	28880860	28880860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	371	504	1	ENST00000282397.4:c.3770G>A	p.Arg1257His	p.R1257H	ENST00000282397	NM_002019.4	1257	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970927	21970927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	52	523	0	ENST00000304494.5:c.431G>A	p.Arg144His	p.R144H	ENST00000304494	NM_000077.4	144	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821890	72821890	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	211	347	0	ENST00000268489.5:c.10285del	p.Arg3429ValfsTer56	p.R3429Vfs*56	ENST00000268489	NM_006885.3	3429	Cgt/gt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	338	465	3	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539018	187539018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	324	554	1	ENST00000441802.2:c.8722G>A	p.Val2908Ile	p.V2908I	ENST00000441802	NM_005245.3	2908	Gtc/Atc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831357	72831358	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTG	rs552138038		P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	113	320	2	ENST00000268489.5:c.5221_5223dup	p.Gln1741dup	p.Q1741dup	ENST00000268489	NM_006885.3	1741	-/CAA																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	296	483	14	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793677	89793677	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	179	347	0	ENST00000336032.3:c.752del	p.Lys251SerfsTer14	p.K251Sfs*14	ENST00000336032	NM_006813.2	249	gAa/ga																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337684	73337684	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	172	303	1	ENST00000377767.4:c.2032delA	p.Ile678PhefsTer59	p.I678Ffs*59	ENST00000377767	NM_014953.3	678	Att/tt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	239	430	2	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467747	50467747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	341	574	2	ENST00000331340.3:c.982C>T	p.Arg328Cys	p.R328C	ENST00000331340	NM_006060.4	328	Cgc/Tgc																																																																															
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	353	537	5	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	438	751	3	ENST00000294008.3:c.1406delC	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790090	40790090	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	134	576	0	ENST00000373198.4:c.2641delC	p.Arg881GlyfsTer20	p.R881Gfs*20	ENST00000373198	NM_133170.3	881	Cgg/gg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	63	629	3	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944928	31944928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	31	259	0	ENST00000340398.3:c.173C>T	p.Thr58Ile	p.T58I	ENST00000340398	NM_001013699.2	58	aCc/aTc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64571939	64571939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1085	264	780	2	ENST00000337652.1:c.1715C>T	p.Ala572Val	p.A572V	ENST00000337652	NM_130803.2	572	gCc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420433	49420433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	371	596	0	ENST00000301067.7:c.15316C>T	p.Arg5106Cys	p.R5106C	ENST00000301067	NM_003482.3	5106	Cgc/Tgc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50826572	50826572	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	174	265	1	ENST00000398568.2:c.2301delT	p.Pro768LeufsTer5	p.P768Lfs*5	ENST00000398568	NM_001042412.1	766	aTt/at																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15989691	15989691	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	261	396	0	ENST00000268712.3:c.3082C>T	p.Arg1028Ter	p.R1028*	ENST00000268712	NM_006311.3	1028	Cga/Tga																																																																															
ERF	2077	MSKCC	GRCh37	19	42753002	42753002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	292	545	0	ENST00000222329.4:c.1262del	p.Pro421ArgfsTer18	p.P421Rfs*18	ENST00000222329	NM_006494.2	421	cCg/cg																																																																															
CIC	23152	MSKCC	GRCh37	19	42797251	42797251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	79	575	0	ENST00000575354.2:c.3613C>T	p.Arg1205Trp	p.R1205W	ENST00000575354	NM_015125.3	1205	Cgg/Tgg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39250103	39250103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	248	597	0	ENST00000402219.2:c.1466G>A	p.Arg489His	p.R489H	ENST00000402219	NM_005633.3	489	cGt/cAt																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46602931	46602931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	368	585	1	ENST00000263734.3:c.989G>A	p.Arg330His	p.R330H	ENST00000263734	NM_001430.4	330	cGc/cAc																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656803	45656803	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	53	575	0	ENST00000407780.3:c.353A>G	p.Gln118Arg	p.Q118R	ENST00000407780	NM_001283052.1	118	cAa/cGa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162237	47162237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	254	353	1	ENST00000409792.3:c.3889C>T	p.Arg1297Cys	p.R1297C	ENST00000409792	NM_014159.6	1297	Cgt/Tgt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027115	71027744	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTAAGCTCTGTGGAGAAGCCTCCGATGCGGACTTGGAGAGAGTGACACTTGATACCAGATTCAACTGCAAGGAAAAAAACAACGTCTTAGAAGACCTTCAGAAAACCAGAGCAACCCAGGAACCACATCTAGCAGGAGTAACACAGAGGATGCGTGGGCACCGTTTCTTCCTCTATGTAGATGGTATGTTTACCATGAACCGAAACACACGGTGAGTCCTGCGTGAATTCACTTAGGATGCAGTGTAAGATATCTCTGGCAGCGGTCTCTTTTCCAAAGGCTGCTACATGGGTGTTTACAGGCTCAAAAAGGGGTTACCTACCTGAGGGAGTGTGAGAAACCCTGAGTCAAGACATTTATTTCATTGTGATGTCTCACCTATAGGCTTTGATCGCCCATCAGGCCTTGTCAACCTCAAAGAGGGAGAGAAGTCCTTAGCAATACCAGTGAAGCTGAGTATTTTAGGTGACACCAGTTGGGATACGCTGGTGTAGATCTGAAGAAGTGTCCAGCAGAATTTCTGCAATATGCTAGCACAACCAAAGAGCTGTTTTTACTTGATTTTTATTAAAATTAAACTTTAATAAATGTAAATGGAAAGAGCCCCATGTGGCTAGTAGCTACCATA	AGGTAAGCTCTGTGGAGAAGCCTCCGATGCGGACTTGGAGAGAGTGACACTTGATACCAGATTCAACTGCAAGGAAAAAAACAACGTCTTAGAAGACCTTCAGAAAACCAGAGCAACCCAGGAACCACATCTAGCAGGAGTAACACAGAGGATGCGTGGGCACCGTTTCTTCCTCTATGTAGATGGTATGTTTACCATGAACCGAAACACACGGTGAGTCCTGCGTGAATTCACTTAGGATGCAGTGTAAGATATCTCTGGCAGCGGTCTCTTTTCCAAAGGCTGCTACATGGGTGTTTACAGGCTCAAAAAGGGGTTACCTACCTGAGGGAGTGTGAGAAACCCTGAGTCAAGACATTTATTTCATTGTGATGTCTCACCTATAGGCTTTGATCGCCCATCAGGCCTTGTCAACCTCAAAGAGGGAGAGAAGTCCTTAGCAATACCAGTGAAGCTGAGTATTTTAGGTGACACCAGTTGGGATACGCTGGTGTAGATCTGAAGAAGTGTCCAGCAGAATTTCTGCAATATGCTAGCACAACCAAAGAGCTGTTTTTACTTGATTTTTATTAAAATTAAACTTTAATAAATGTAAATGGAAAGAGCCCCATGTGGCTAGTAGCTACCATA	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	109	508	0	ENST00000318789.4:c.1147-564_1212del		p.X383_splice	ENST00000318789	NM_032682.5	383																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89478316	89478316	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	149	379	1	ENST00000336596.2:c.2135G>A	p.Arg712His	p.R712H	ENST00000336596	NM_005233.5	712	cGt/cAt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35857131	35857131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	125	264	0	ENST00000303115.3:c.52G>A	p.Val18Ile	p.V18I	ENST00000303115	NM_002185.3	18	Gtt/Att																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161180	56161180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	95	375	0	ENST00000399503.3:c.1049C>T	p.Ala350Val	p.A350V	ENST00000399503	NM_005921.1	350	gCa/gTa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69039636	69039636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	145	423	1	ENST00000288368.4:c.3748G>A	p.Ala1250Thr	p.A1250T	ENST00000288368	NM_024870.2	1250	Gct/Act																																																																															
JAK2	3717	MSKCC	GRCh37	9	5044422	5044422	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	260	466	2	ENST00000381652.3:c.370T>C	p.Tyr124His	p.Y124H	ENST00000381652	NM_004972.3	124	Tat/Cat																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0029260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	13	531	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10267124	10267124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	10	700	1	ENST00000340748.4:c.1294G>A	p.Glu432Lys	p.E432K	ENST00000340748		432	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112179566	112179566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	10	455	3	ENST00000257430.4:c.8275C>T	p.Arg2759Cys	p.R2759C	ENST00000257430	NM_000038.5	2759	Cgt/Tgt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138857	64138857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	141	563	0	ENST00000334205.4:c.2224C>T	p.Arg742Cys	p.R742C	ENST00000334205	NM_003942.2	742	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579491	7579500	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTGGGAGC	TTCTGGGAGC	-			P-0029277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	296	741	0	ENST00000269305.4:c.187_196del	p.Ala63CysfsTer57	p.A63Cfs*57	ENST00000269305	NM_001126112.2	63	GCTCCCAGAAtg/tg																																																																															
NF1	4763	MSKCC	GRCh37	17	29654848	29654848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	24	292	0	ENST00000358273.4:c.5600C>T	p.Pro1867Leu	p.P1867L	ENST00000358273	NM_001042492.2	1867	cCg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224379	36224379	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1253	159	888	0	ENST00000222270.7:c.6932del	p.Pro2311LeufsTer14	p.P2311Lfs*14	ENST00000222270	NM_014727.1	2310	aCc/ac																																																																															
APC	324	MSKCC	GRCh37	5	112164646	112164646	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	79	312	0	ENST00000257430.4:c.1720G>T	p.Glu574Ter	p.E574*	ENST00000257430	NM_000038.5	574	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	170	636	2	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	87	260	0	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78428488	78428488	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	101	459	1	ENST00000370768.2:c.1311C>G	p.Asp437Glu	p.D437E	ENST00000370768	NM_003902.3	437	gaC/gaG																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563204	21563204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	337	814	4	ENST00000382592.4:c.715G>A	p.Val239Ile	p.V239I	ENST00000382592	NM_014572.2	239	Gta/Ata																																																																															
TP53	7157	MSKCC	GRCh37	17	7577524	7577524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	24	548	0	ENST00000269305.4:c.757del	p.Thr253ProfsTer92	p.T253Pfs*92	ENST00000269305	NM_001126112.2	253	Acc/cc																																																																															
MET	4233	MSKCC	GRCh37	7	116413502	116413502	+	intron_variant	Intron	SNP	G	G	T			P-0029286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	39	766	0	ENST00000397752.3:c.3029-1433G>T		p.*1010*	ENST00000397752	NM_000245.2	1010																																																																																
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0029287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	94	492	0	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217872	7217875	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	-			P-0029287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	134	549	1	ENST00000380728.2:c.136_139delGAAG	p.Glu46AsnfsTer16	p.E46Nfs*16	ENST00000380728		46	GAAGaa/aa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16203082	16203082	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	173	467	0	ENST00000375759.3:c.790A>T	p.Arg264Ter	p.R264*	ENST00000375759	NM_015001.2	264	Aga/Tga																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98220343	98220343	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	162	430	0	ENST00000331920.6:c.3120C>G	p.Phe1040Leu	p.F1040L	ENST00000331920	NM_000264.3	1040	ttC/ttG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0029295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1294	50	793	2	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
PARP1	142	MSKCC	GRCh37	1	226550857	226550857	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	67	315	0	ENST00000366794.5:c.2791G>T	p.Glu931Ter	p.E931*	ENST00000366794	NM_001618.3	931	Gaa/Taa																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625386	69625386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3303	331	778	0	ENST00000334134.2:c.407C>T	p.Thr136Met	p.T136M	ENST00000334134	NM_005247.2	136	aCg/aTg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77103541	77103541	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	71	265	0	ENST00000356341.3:c.25C>G	p.Gln9Glu	p.Q9E	ENST00000356341	NM_002576.4	9	Caa/Gaa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78831634	78831634	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	109	630	0	ENST00000306801.3:c.1443G>C	p.Gln481His	p.Q481H	ENST00000306801	NM_020761.2	481	caG/caC																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919021	50919021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	48	827	0	ENST00000440232.2:c.2758G>A	p.Asp920Asn	p.D920N	ENST00000440232	NM_002691.3	920	Gac/Aac																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961532	54961532	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	121	424	1	ENST00000312783.6:c.100C>T	p.Gln34Ter	p.Q34*	ENST00000312783	NM_198436.1	34	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584549	187584549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	91	244	0	ENST00000441802.2:c.3484G>A	p.Glu1162Lys	p.E1162K	ENST00000441802	NM_005245.3	1162	Gag/Aag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163813	32163814	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0029296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	90	532	1	ENST00000375023.3:c.5412_5413delinsAA	p.Asp1805Asn	p.D1805N	ENST00000375023	NM_004557.3	1804	gcGGac/gcAAac																																																																															
RAD50	10111	MSKCC	GRCh37	5	131927649	131927650	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	14	102	0	ENST00000265335.6:c.1722dup	p.Gln575ThrfsTer3	p.Q575Tfs*3	ENST00000265335		572	-/A																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40864896	40864896	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	517	368	0	ENST00000373198.4:c.2372G>T	p.Arg791Ile	p.R791I	ENST00000373198	NM_133170.3	791	aGa/aTa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822645	72822645	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149133285		P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	366	609	0	ENST00000268489.5:c.9530C>T	p.Ser3177Leu	p.S3177L	ENST00000268489	NM_006885.3	3177	tCg/tTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944410	40944410	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	668	507	0	ENST00000373198.4:c.2092C>A	p.Leu698Met	p.L698M	ENST00000373198	NM_133170.3	698	Ctg/Atg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600330	10600330	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	399	573	0	ENST00000171111.5:c.1525G>T	p.Gly509Trp	p.G509W	ENST00000171111	NM_203500.1	509	Ggg/Tgg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513299	106513299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	184	323	0	ENST00000359195.3:c.2203C>A	p.Gln735Lys	p.Q735K	ENST00000359195	NM_002649.2	735	Caa/Aaa																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987076	36987076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	428	560	0	ENST00000354822.5:c.613G>A	p.Glu205Lys	p.E205K	ENST00000354822	NM_001079668.2	205	Gag/Aag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69050700	69050700	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	30	435	0	ENST00000288368.4:c.4035G>T	p.Leu1345Phe	p.L1345F	ENST00000288368	NM_024870.2	1345	ttG/ttT																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625457	69625457	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	335	566	1	ENST00000334134.2:c.336C>A	p.Ser112Arg	p.S112R	ENST00000334134	NM_005247.2	112	agC/agA																																																																															
RB1	5925	MSKCC	GRCh37	13	48955572	48955572	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	177	359	0	ENST00000267163.4:c.1688G>T	p.Trp563Leu	p.W563L	ENST00000267163	NM_000321.2	563	tGg/tTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436350	110436350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	273	415	0	ENST00000375856.3:c.2051C>T	p.Ser684Phe	p.S684F	ENST00000375856	NM_003749.2	684	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579505	7579517	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGGACCTGGGT	TCTGGACCTGGGT	-			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	423	698	0	ENST00000269305.4:c.170_182del	p.Asp57ValfsTer62	p.D57Vfs*62	ENST00000269305	NM_001126112.2	57	gACCCAGGTCCAGAt/gt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489465	40489465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	312	410	1	ENST00000264657.5:c.785G>T	p.Arg262Leu	p.R262L	ENST00000264657	NM_139276.2	262	cGg/cTg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643334	52643334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	224	324	0	ENST00000394830.3:c.2562G>A	p.Met854Ile	p.M854I	ENST00000394830	NM_018313.4	854	atG/atA																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643624	52643624	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	317	451	0	ENST00000394830.3:c.2272G>T	p.Glu758Ter	p.E758*	ENST00000394830	NM_018313.4	758	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174862	112174862	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	177	294	0	ENST00000257430.4:c.3571C>G	p.Gln1191Glu	p.Q1191E	ENST00000257430	NM_000038.5	1191	Cag/Gag																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020990	26020990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	490	375	0	ENST00000357647.3:c.273G>A	p.Met91Ile	p.M91I	ENST00000357647	NM_003529.2	91	atG/atA																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672866	30672866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	506	733	0	ENST00000376406.3:c.4094C>T	p.Ser1365Leu	p.S1365L	ENST00000376406	NM_014641.2	1365	tCa/tTa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393352	139393352	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	54	579	0	ENST00000277541.6:c.6179G>T	p.Arg2060Met	p.R2060M	ENST00000277541	NM_017617.3	2060	aGg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0029304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	49	335	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0029304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	487	551	0	ENST00000269305.4:c.365_366delTG	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175217	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	133	215	0	ENST00000257430.4:c.3929dup	p.Ile1311AspfsTer4	p.I1311Dfs*4	ENST00000257430	NM_000038.5	1309	gaa/gAaa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223252	5223252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	260	645	2	ENST00000357368.4:c.2551C>T	p.Arg851Cys	p.R851C	ENST00000357368	NM_002850.3	851	Cgc/Tgc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519922		P-0029315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	91	558	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740284	162740284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	57	325	0	ENST00000367921.3:c.1486C>T	p.Pro496Ser	p.P496S	ENST00000367921	NM_006182.2	496	Cca/Tca																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850894	63850894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	103	444	0	ENST00000279873.7:c.1672G>A	p.Gly558Arg	p.G558R	ENST00000279873	NM_032199.2	558	Ggg/Agg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135091	11135091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	137	851	0	ENST00000344626.4:c.3058G>C	p.Asp1020His	p.D1020H	ENST00000344626	NM_003072.3	1020	Gat/Cat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47142976	47142976	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	102	556	0	ENST00000409792.3:c.4987del	p.Thr1663ArgfsTer42	p.T1663Rfs*42	ENST00000409792	NM_014159.6	1663	Acg/cg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950699	38950699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	44	353	0	ENST00000357387.3:c.3251C>T	p.Ser1084Leu	p.S1084L	ENST00000357387	NM_152756.3	1084	tCa/tTa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53225196	53225196	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	123	659	3	ENST00000375401.3:c.3022G>T	p.Glu1008Ter	p.E1008*	ENST00000375401	NM_004187.3	1008	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	272	347	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	417	507	0	ENST00000269305.4:c.581T>C	p.Leu194Pro	p.L194P	ENST00000269305	NM_001126112.2	194	cTt/cCt																																																																															
APC	324	MSKCC	GRCh37	5	112175531	112175532	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	197	285	0	ENST00000257430.4:c.4241dup	p.Ser1415LysfsTer8	p.S1415Kfs*8	ENST00000257430	NM_000038.5	1414	gta/gTta																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603006	48603006	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0029321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	184	231	0	ENST00000342988.3:c.1309-2A>G		p.X437_splice	ENST00000342988	NM_005359.5	437																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40714418	40714418	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	116	431	0	ENST00000373198.4:c.3979A>T	p.Ile1327Phe	p.I1327F	ENST00000373198	NM_133170.3	1327	Atc/Ttc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	110	254	2	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533904	63533904	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201460658		P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	107	388	0	ENST00000307078.5:c.1250C>T	p.Ala417Val	p.A417V	ENST00000307078	NM_004655.3	417	gCg/gTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	125	577	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258927	16258928	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	189	759	0	ENST00000375759.3:c.6198dup	p.Pro2067ThrfsTer4	p.P2067Tfs*4	ENST00000375759	NM_015001.2	2064	-/A																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	39	470	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	84	331	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	107	331	0	ENST00000342505.4:c.1016delA	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971195	13971195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	109	350	2	ENST00000405192.2:c.734C>T	p.Ala245Val	p.A245V	ENST00000405192	NM_001163147.1	245	gCg/gTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	47	556	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
CIC	23152	MSKCC	GRCh37	19	42799060	42799060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	170	751	0	ENST00000575354.2:c.4544G>A	p.Arg1515His	p.R1515H	ENST00000575354	NM_015125.3	1515	cGc/cAc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123836	46123836	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	150	243	1	ENST00000334344.6:c.102T>A	p.Phe34Leu	p.F34L	ENST00000334344	NM_152641.2	34	ttT/ttA																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	41	493	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615691	1615691	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141432924		P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	153	699	2	ENST00000344749.5:c.1580G>A	p.Arg527Gln	p.R527Q	ENST00000344749	NM_001136139.2	527	cGg/cAg																																																																															
ABL1	25	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	131	704	0	ENST00000318560.5:c.2352delC	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7989345	7989345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	138	566	1	ENST00000319144.4:c.341G>A	p.Arg114Gln	p.R114Q	ENST00000319144	NM_001139.2	114	cGg/cAg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	102	572	3	ENST00000261937.6:c.89dupC	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																															
NF1	4763	MSKCC	GRCh37	17	29654856	29654856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	62	277	1	ENST00000358273.4:c.5608C>T	p.Arg1870Trp	p.R1870W	ENST00000358273	NM_001042492.2	1870	Cgg/Tgg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480396	89480396	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	49	261	0	ENST00000336596.2:c.2233C>T	p.Arg745Ter	p.R745*	ENST00000336596	NM_005233.5	745	Cga/Tga																																																																															
MET	4233	MSKCC	GRCh37	7	116398625	116398625	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45587940		P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	116	445	0	ENST00000397752.3:c.2215C>T	p.Arg739Cys	p.R739C	ENST00000397752	NM_000245.2	739	Cgt/Tgt																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	107	438	3	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	181	790	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118347553	118347553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	111	386	1	ENST00000534358.1:c.3190C>T	p.Arg1064Ter	p.R1064*	ENST00000534358	NM_005933.3	1064	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	143	681	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286255	66286255	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	79	340	0	ENST00000273854.3:c.1431del	p.Ile480LeufsTer21	p.I480Lfs*21	ENST00000273854	NM_004439.5	477	aaA/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830807	72830807	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	144	551	3	ENST00000268489.5:c.5774del	p.Gly1925ValfsTer72	p.G1925Vfs*72	ENST00000268489	NM_006885.3	1925	gGt/gt																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112771563	112771563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	30	397	1	ENST00000369452.4:c.1736G>A	p.Arg579His	p.R579H	ENST00000369452	NM_007373.3	579	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574030	7574030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	148	463	1	ENST00000269305.4:c.997C>T	p.Arg333Cys	p.R333C	ENST00000269305	NM_001126112.2	333	Cgt/Tgt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99478548	99478548	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	70	276	1	ENST00000268035.6:c.3190C>T	p.Arg1064Ter	p.R1064*	ENST00000268035	NM_000875.3	1064	Cga/Tga																																																																															
SLX4	84464	MSKCC	GRCh37	16	3656525	3656525	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138615800		P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	169	635	0	ENST00000294008.3:c.710G>A	p.Arg237Gln	p.R237Q	ENST00000294008	NM_032444.2	237	cGg/cAg																																																																															
CIC	23152	MSKCC	GRCh37	19	42794869	42794869	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	82	585	0	ENST00000575354.2:c.1953delC	p.Ala652ProfsTer76	p.A652Pfs*76	ENST00000575354	NM_015125.3	650	gCc/gc																																																																															
INSR	3643	MSKCC	GRCh37	19	7122996	7122996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	139	583	0	ENST00000302850.5:c.3263G>A	p.Arg1088His	p.R1088H	ENST00000302850	NM_000208.2	1088	cGc/cAc																																																																															
SESN2	83667	MSKCC	GRCh37	1	28600661	28600661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	160	503	0	ENST00000253063.3:c.1012C>T	p.Arg338Trp	p.R338W	ENST00000253063	NM_031459.4	338	Cgg/Tgg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65305357	65305357	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	119	531	2	ENST00000342505.4:c.2771del	p.Lys924ArgfsTer6	p.K924Rfs*6	ENST00000342505	NM_002227.2	924	aAg/ag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946379	71946379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	182	667	1	ENST00000298229.2:c.2543C>T	p.Thr848Met	p.T848M	ENST00000298229	NM_001567.3	848	aCg/aTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343804	118343804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	139	475	1	ENST00000534358.1:c.1930C>T	p.Arg644Cys	p.R644C	ENST00000534358	NM_005933.3	644	Cgc/Tgc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343849	118343849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	63	480	0	ENST00000534358.1:c.1975G>A	p.Glu659Lys	p.E659K	ENST00000534358	NM_005933.3	659	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49422892	49422892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	144	598	0	ENST00000301067.7:c.14203C>T	p.Arg4735Trp	p.R4735W	ENST00000301067	NM_003482.3	4735	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438655	49438655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	144	593	0	ENST00000301067.7:c.4835G>A	p.Arg1612His	p.R1612H	ENST00000301067	NM_003482.3	1612	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440420	49440420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	169	641	0	ENST00000301067.7:c.4390G>A	p.Val1464Ile	p.V1464I	ENST00000301067	NM_003482.3	1464	Gtc/Atc																																																																															
MSI1	4440	MSKCC	GRCh37	12	120794763	120794763	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	199	674	0	ENST00000257552.2:c.594del	p.Arg199GlyfsTer50	p.R199Gfs*50	ENST00000257552	NM_002442.3	198	ggG/gg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73342975	73342975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	170	398	0	ENST00000377767.4:c.1831C>T	p.Arg611Cys	p.R611C	ENST00000377767	NM_014953.3	611	Cgt/Tgt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435832	110435832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	101	342	0	ENST00000375856.3:c.2569G>A	p.Gly857Ser	p.G857S	ENST00000375856	NM_003749.2	857	Ggc/Agc																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68301899	68301899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	142	414	0	ENST00000487270.1:c.301G>A	p.Gly101Arg	p.G101R	ENST00000487270	NM_133509.3	101	Gga/Aga																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43784245	43784245	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143693242		P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	53	648	0	ENST00000382044.4:c.241G>A	p.Gly81Ser	p.G81S	ENST00000382044	NM_001141980.1	81	Ggt/Agt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134569	2134569	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	120	730	0	ENST00000219476.3:c.4351del	p.Arg1451AlafsTer25	p.R1451Afs*25	ENST00000219476	NM_000548.3	1449	tCc/tc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640370	3640370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	36	761	1	ENST00000294008.3:c.3269C>T	p.Thr1090Met	p.T1090M	ENST00000294008	NM_032444.2	1090	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827463	72827463	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	153	584	0	ENST00000268489.5:c.9118C>T	p.Arg3040Cys	p.R3040C	ENST00000268489	NM_006885.3	3040	Cgt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829115	72829115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	30	490	0	ENST00000268489.5:c.7466del	p.Pro2489LeufsTer39	p.P2489Lfs*39	ENST00000268489	NM_006885.3	2489	cCt/ct																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004570	16004571	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	29	318	0	ENST00000268712.3:c.2683_2684del	p.Arg895AlafsTer52	p.R895Afs*52	ENST00000268712	NM_006311.3	895	AGg/g																																																																															
FLCN	201163	MSKCC	GRCh37	17	17125885	17125885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	127	555	0	ENST00000285071.4:c.709G>A	p.Ala237Thr	p.A237T	ENST00000285071	NM_144997.5	237	Gcc/Acc																																																																															
NF1	4763	MSKCC	GRCh37	17	29677260	29677262	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	23	377	0	ENST00000358273.4:c.7387_7389del	p.Leu2463del	p.L2463del	ENST00000358273	NM_001042492.2	2461	CTT/-																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879706	37879706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	89	458	2	ENST00000269571.5:c.2081C>T	p.Thr694Met	p.T694M	ENST00000269571		694	aCg/aTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436035	56436035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	88	408	1	ENST00000407977.2:c.1102C>T	p.Arg368Trp	p.R368W	ENST00000407977		368	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438199	56438199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	139	662	0	ENST00000407977.2:c.794G>A	p.Ser265Asn	p.S265N	ENST00000407977		265	aGc/aAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097092	11097092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	102	637	2	ENST00000344626.4:c.583C>T	p.Pro195Ser	p.P195S	ENST00000344626	NM_003072.3	195	Ccc/Tcc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15308365	15308365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	65	649	2	ENST00000263388.2:c.143C>T	p.Pro48Leu	p.P48L	ENST00000263388	NM_000435.2	48	cCg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223892	36223892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	145	758	0	ENST00000222270.7:c.6442C>T	p.Pro2148Ser	p.P2148S	ENST00000222270	NM_014727.1	2148	Ccc/Tcc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753717	42753717	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	158	738	0	ENST00000222329.4:c.547C>T	p.Arg183Ter	p.R183*	ENST00000222329	NM_006494.2	183	Cga/Tga																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906845	50906845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	83	487	0	ENST00000440232.2:c.1233G>T	p.Gln411His	p.Q411H	ENST00000440232	NM_002691.3	411	caG/caT																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128015227	128015227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	130	439	0	ENST00000285398.2:c.2294G>A	p.Arg765Gln	p.R765Q	ENST00000285398	NM_000122.1	765	cGg/cAg																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62324311	62324311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	138	604	5	ENST00000508582.2:c.2878G>A	p.Gly960Ser	p.G960S	ENST00000508582		960	Ggc/Agc																																																																															
PPARG	5468	MSKCC	GRCh37	3	12421274	12421274	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149324518		P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	150	565	0	ENST00000287820.6:c.154G>A	p.Val52Ile	p.V52I	ENST00000287820	NM_015869.4	52	Gta/Ata																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164507	47164507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	93	345	0	ENST00000409792.3:c.1619G>A	p.Arg540Gln	p.R540Q	ENST00000409792	NM_014159.6	540	cGa/cAa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71064782	71064782	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	130	403	0	ENST00000318789.4:c.892del	p.His298IlefsTer27	p.H298Ifs*27	ENST00000318789	NM_032682.5	298	Cat/at																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73047240	73047240	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	122	381	1	ENST00000356692.5:c.51delG	p.Lys19ArgfsTer14	p.K19Rfs*14	ENST00000356692		16	aGg/ag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391207	89391207	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	139	374	0	ENST00000336596.2:c.1273T>A	p.Phe425Ile	p.F425I	ENST00000336596	NM_005233.5	425	Ttt/Att																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801031	1801031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	157	717	2	ENST00000260795.2:c.160G>A	p.Gly54Arg	p.G54R	ENST00000260795		54	Ggg/Agg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356347	66356347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	117	448	0	ENST00000273854.3:c.1150G>A	p.Gly384Ser	p.G384S	ENST00000273854	NM_004439.5	384	Ggt/Agt																																																																															
TET2	54790	MSKCC	GRCh37	4	106157927	106157929	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	89	309	0	ENST00000380013.4:c.2830_2832del	p.Lys944del	p.K944del	ENST00000380013	NM_001127208.2	943	cAGAag/cag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247369	153247369	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	96	304	0	ENST00000281708.4:c.1433C>A	p.Ser478Tyr	p.S478Y	ENST00000281708	NM_033632.3	478	tCt/tAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538953	187538956	+	frameshift_variant	Frame_Shift_Del	DEL	CTCA	CTCA	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	106	398	0	ENST00000441802.2:c.8784_8787del	p.Ser2928ArgfsTer8	p.S2928Rfs*8	ENST00000441802	NM_005245.3	2928	agTGAG/ag																																																																															
MSH3	4437	MSKCC	GRCh37	5	79966006	79966006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	142	520	2	ENST00000265081.6:c.670C>T	p.Arg224Trp	p.R224W	ENST00000265081	NM_002439.4	224	Cgg/Tgg																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89791150	89791151	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	48	116	0	ENST00000336032.3:c.539_540del	p.Glu180GlyfsTer27	p.E180Gfs*27	ENST00000336032	NM_006813.2	179	aaAGag/aaag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956549	93956549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	32	318	0	ENST00000369303.4:c.2687A>G	p.Asn896Ser	p.N896S	ENST00000369303	NM_004440.3	896	aAc/aGc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38139035	38139035	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	129	542	2	ENST00000317025.8:c.3568C>T	p.Arg1190Ter	p.R1190*	ENST00000317025	NM_023034.1	1190	Cga/Tga																																																																															
AGO2	27161	MSKCC	GRCh37	8	141595345	141595345	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777295689		P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	148	618	2	ENST00000220592.5:c.88G>A	p.Asp30Asn	p.D30N	ENST00000220592	NM_012154.3	30	Gac/Aac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460468	8460468	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	41	499	1	ENST00000356435.5:c.3818C>A	p.Pro1273His	p.P1273H	ENST00000356435		1273	cCt/cAt																																																																															
ABL1	25	MSKCC	GRCh37	9	133730436	133730436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	116	373	1	ENST00000318560.5:c.502G>A	p.Glu168Lys	p.E168K	ENST00000318560	NM_005157.4	168	Gaa/Aaa																																																																															
ATRX	546	MSKCC	GRCh37	X	76855027	76855027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	94	194	0	ENST00000373344.5:c.5809G>A	p.Gly1937Arg	p.G1937R	ENST00000373344	NM_000489.3	1937	Ggg/Agg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274734	123274734	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	94	479	0	ENST00000358487.5:c.1184T>A	p.Val395Asp	p.V395D	ENST00000358487	NM_000141.4	395	gTc/gAc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362446	40362447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1202978138		P-0029327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	66	636	1	ENST00000293328.3:c.1749dup	p.His584ThrfsTer8	p.H584Tfs*8	ENST00000293328	NM_012448.3	583	-/A																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43771677	43771677	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	32	555	0	ENST00000382044.4:c.706C>T	p.Gln236Ter	p.Q236*	ENST00000382044	NM_001141980.1	236	Cag/Tag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245350	41245350	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	36	636	0	ENST00000357654.3:c.2198A>G	p.Glu733Gly	p.E733G	ENST00000357654	NM_007294.3	733	gAg/gGg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163641	32163641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	47	384	0	ENST00000375023.3:c.5585G>T	p.Arg1862Leu	p.R1862L	ENST00000375023	NM_004557.3	1862	cGg/cTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390280	139390774	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	CAGAATAGATAAAAGTTTCTACCTGGGGCCAGATAAAACAGTACATATAAATAAAAAGGCAGTGTTTCTGTGTAAAATAAAAGTACATAAATAAATACTAAAAAAAATTAAAATCCTCGTTCTTATTTTGTATAAAAACATGTGTTTTAAAAAGGCTCCTCTGGTCGGCCCTGGCATCCACAGAGCGCACACAGACGCCCGAAGGCTTGGGAAAGGAAGCCGGGGTCTCGTGGGGCGCGCCGTTTACTTGAAGGCCTCCGGAATGCGGGCGATCTGGGACTGCATGCTGGTGGGAGGGCTGGAGACGCCCTCGGACCAGTCGGAGACGTTGGAATGCGGGGACGAGCTGGACCACTGGTCAGGGGACTCAGGGGACGGGGTGAGGAAGGGGTGCTCAGGCACCTGTAGCTGGTGGCTGGGGGTGTTGTCCACAGGCGAGGAGTAGCTGTGCTGCGAGGGGGGCGTCAGGAACTGGGCTGCGGTCACGGGTGGGAC	CAGAATAGATAAAAGTTTCTACCTGGGGCCAGATAAAACAGTACATATAAATAAAAAGGCAGTGTTTCTGTGTAAAATAAAAGTACATAAATAAATACTAAAAAAAATTAAAATCCTCGTTCTTATTTTGTATAAAAACATGTGTTTTAAAAAGGCTCCTCTGGTCGGCCCTGGCATCCACAGAGCGCACACAGACGCCCGAAGGCTTGGGAAAGGAAGCCGGGGTCTCGTGGGGCGCGCCGTTTACTTGAAGGCCTCCGGAATGCGGGCGATCTGGGACTGCATGCTGGTGGGAGGGCTGGAGACGCCCTCGGACCAGTCGGAGACGTTGGAATGCGGGGACGAGCTGGACCACTGGTCAGGGGACTCAGGGGACGGGGTGAGGAAGGGGTGCTCAGGCACCTGTAGCTGGTGGCTGGGGGTGTTGTCCACAGGCGAGGAGTAGCTGTGCTGCGAGGGGGGCGTCAGGAACTGGGCTGCGGTCACGGGTGGGAC	-			P-0029327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			10	171	35	0	ENST00000277541.6:c.7417_*243del		p.*2473*	ENST00000277541	NM_017617.3	2473																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139397717	139397717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	201	632	1	ENST00000277541.6:c.5084G>T	p.Ser1695Ile	p.S1695I	ENST00000277541	NM_017617.3	1695	aGt/aTt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399125	139399125	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0029327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	41	583	0	ENST00000277541.6:c.5018G>T	p.Gly1673Val	p.G1673V	ENST00000277541	NM_017617.3	1673	gGc/gTc																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505637	186505652	+	frameshift_variant	Frame_Shift_Del	DEL	GATCTACCTACCAATC	GATCTACCTACCAATC	-			P-0029327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	22	285	0	ENST00000323963.5:c.1046_1061del	p.Asp349ValfsTer21	p.D349Vfs*21	ENST00000323963		349	GATCTACCTACCAATCgt/gt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0029328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	276	290	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	428	477	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																															
AURKA	6790	MSKCC	GRCh37	20	54948538	54948538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	65	385	0	ENST00000312783.6:c.780G>T	p.Glu260Asp	p.E260D	ENST00000312783	NM_198436.1	260	gaG/gaT																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	178	499	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																															
CDH1	999	MSKCC	GRCh37	16	68856113	68856113	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	95	458	0	ENST00000261769.5:c.1921C>T	p.Gln641Ter	p.Q641*	ENST00000261769	NM_004360.3	641	Cag/Tag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061461	38061461	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	56	330	0	ENST00000250448.2:c.528C>G	p.Ile176Met	p.I176M	ENST00000250448	NM_004496.3	176	atC/atG																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264401	46264401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	79	357	0	ENST00000371998.3:c.1448C>T	p.Ser483Phe	p.S483F	ENST00000371998		483	tCt/tTt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120512162	120512162	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	42	338	0	ENST00000256646.2:c.1080C>A	p.Phe360Leu	p.F360L	ENST00000256646	NM_024408.3	360	ttC/ttA																																																																															
ATM	472	MSKCC	GRCh37	11	108192044	108192044	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	71	346	1	ENST00000278616.4:c.6469G>T	p.Glu2157Ter	p.E2157*	ENST00000278616	NM_000051.3	2157	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447881	49447881	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	92	450	0	ENST00000301067.7:c.553C>G	p.Arg185Gly	p.R185G	ENST00000301067	NM_003482.3	185	Cgc/Ggc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111855984	111855984	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	72	376	0	ENST00000341259.2:c.35C>G	p.Ser12Cys	p.S12C	ENST00000341259	NM_005475.2	12	tCt/tGt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16068354	16068360	+	frameshift_variant	Frame_Shift_Del	DEL	TCCATAC	TCCATAC	-			P-0029329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	13	27	0	ENST00000268712.3:c.551_557del	p.Ser184IlefsTer3	p.S184Ifs*3	ENST00000268712	NM_006311.3	184	aGTATGGAt/at																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627841	37627841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	94	520	0	ENST00000447079.4:c.1756C>T	p.Pro586Ser	p.P586S	ENST00000447079	NM_015083.1	586	Cct/Tct																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99155372	99155372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	21	325	0	ENST00000074304.5:c.598G>A	p.Glu200Lys	p.E200K	ENST00000074304	NM_001134224.1	200	Gag/Aag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147564	47147564	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	68	346	0	ENST00000409792.3:c.4762G>C	p.Glu1588Gln	p.E1588Q	ENST00000409792	NM_014159.6	1588	Gag/Cag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620496	52620496	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	24	381	0	ENST00000394830.3:c.3257A>C	p.Lys1086Thr	p.K1086T	ENST00000394830	NM_018313.4	1086	aAg/aCg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056609	26056609	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	36	133	0	ENST00000343677.2:c.48G>C	p.Glu16Asp	p.E16D	ENST00000343677	NM_005319.3	16	gaG/gaC																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146958	38146958	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	70	563	0	ENST00000317025.8:c.3184G>C	p.Glu1062Gln	p.E1062Q	ENST00000317025	NM_023034.1	1062	Gag/Cag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812338	212812338	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	66	189	0	ENST00000342788.4:c.238G>T	p.Val80Phe	p.V80F	ENST00000342788	NM_005235.2	80	Gtt/Ttt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923732	72923741	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTTCGCTG	CGCTTCGCTG	-			P-0029339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	526	422	0	ENST00000268489.5:c.3337_3346del	p.Gln1113ArgfsTer71	p.Q1113Rfs*71	ENST00000268489	NM_006885.3	1113	CAGCGAAGCGag/ag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	334	449	0	ENST00000347630.2:c.398T>C	p.Phe133Ser	p.F133S	ENST00000347630	NM_001007230.1	133	tTc/tCc																																																																															
APC	324	MSKCC	GRCh37	5	112175906	112175912	+	frameshift_variant	Frame_Shift_Del	DEL	TCAGAGC	TCAGAGC	-			P-0029339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	156	245	0	ENST00000257430.4:c.4615_4621del	p.Glu1540LeufsTer23	p.E1540Lfs*23	ENST00000257430	NM_000038.5	1539	TCAGAGCag/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0029362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	98	402	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271447	26271447	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	47	301	0	ENST00000305910.3:c.166C>G	p.Gln56Glu	p.Q56E	ENST00000305910	NM_003534.2	56	Cag/Gag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210377	36210377	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	98	424	1	ENST00000222270.7:c.370C>T	p.Gln124Ter	p.Q124*	ENST00000222270	NM_014727.1	124	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720681	89720681	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	35	178	0	ENST00000371953.3:c.833del	p.Phe278SerfsTer13	p.F278Sfs*13	ENST00000371953	NM_000314.4	278	Ttc/tc																																																																															
CDH1	999	MSKCC	GRCh37	16	68842603	68842603	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	77	379	0	ENST00000261769.5:c.539C>G	p.Ser180Cys	p.S180C	ENST00000261769	NM_004360.3	180	tCc/tGc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670631	134670631	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	127	449	0	ENST00000398015.3:c.542G>C	p.Gly181Ala	p.G181A	ENST00000398015	NM_004441.4	181	gGa/gCa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591136	67591144	+	inframe_deletion	In_Frame_Del	DEL	AGAGACCAA	AGAGACCAA	-			P-0029362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	57	236	0	ENST00000274335.5:c.1729_1737del	p.Arg577_Gln579del	p.R577_Q579del	ENST00000274335		577	AGAGACCAA/-																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523660	176523660	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	126	605	0	ENST00000292408.4:c.2071C>G	p.Pro691Ala	p.P691A	ENST00000292408	NM_213647.1	691	Cct/Gct																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137525471	137525471	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	84	343	2	ENST00000367739.4:c.544G>A	p.Glu182Lys	p.E182K	ENST00000367739	NM_000416.2	182	Gag/Aag																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38173545	38173545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	88	260	0	ENST00000317025.8:c.1871C>T	p.Ser624Leu	p.S624L	ENST00000317025	NM_023034.1	624	tCa/tTa																																																																															
AR	367	MSKCC	GRCh37	X	66942821	66942821	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	102	326	1	ENST00000374690.3:c.2602C>T	p.Gln868Ter	p.Q868*	ENST00000374690	NM_000044.3	868	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	45	391	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0029364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	46	291	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	31	225	0	ENST00000281708.4:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000281708	NM_033632.3	545	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	32	241	0	ENST00000257430.4:c.4473dupT	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457388	67457388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	172	487	1	ENST00000327367.4:c.362G>A	p.Cys121Tyr	p.C121Y	ENST00000327367	NM_005902.3	121	tGc/tAc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395647	45395647	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	31	416	0	ENST00000262160.6:c.487A>G	p.Asn163Asp	p.N163D	ENST00000262160	NM_005901.5	163	Aac/Gac																																																																															
AURKA	6790	MSKCC	GRCh37	20	54958075	54958075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	48	229	0	ENST00000312783.6:c.532C>T	p.Leu178Phe	p.L178F	ENST00000312783	NM_198436.1	178	Ctc/Ttc																																																																															
APC	324	MSKCC	GRCh37	5	112174303	112174303	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	36	253	0	ENST00000257430.4:c.3012del	p.Ala1005ProfsTer17	p.A1005Pfs*17	ENST00000257430	NM_000038.5	1004	ctA/ct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0029370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	203	465	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448592	89448592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	124	478	2	ENST00000336596.2:c.1556C>T	p.Thr519Met	p.T519M	ENST00000336596	NM_005233.5	519	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0029370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	31	312	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175621	112175621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	70	360	0	ENST00000257430.4:c.4330C>T	p.Gln1444Ter	p.Q1444*	ENST00000257430	NM_000038.5	1444	Caa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108201082	108201082	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	23	359	0	ENST00000278616.4:c.7449G>A	p.Trp2483Ter	p.W2483*	ENST00000278616	NM_000051.3	2483	tgG/tgA																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478795	56478795	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	119	538	0	ENST00000267101.3:c.251C>A	p.Thr84Lys	p.T84K	ENST00000267101	NM_001982.3	84	aCa/aAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	175	527	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0029382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	171	361	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0029382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	189	347	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66522006	66522007	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGAAAT			P-0029382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	169	319	1	ENST00000358598.2:c.664_669dup	p.Lys222_Leu223dup	p.K222_L223dup	ENST00000358598	NM_212471.2	222	gtg/gTGAAATtg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410676	63410676	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	134	708	0	ENST00000330258.3:c.2491G>T	p.Asp831Tyr	p.D831Y	ENST00000330258	NM_152424.3	831	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	118	447	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438153	110438153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	159	321	0	ENST00000375856.3:c.248G>A	p.Arg83Gln	p.R83Q	ENST00000375856	NM_003749.2	83	cGg/cAg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332436	70332436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	244	520	1	ENST00000373644.4:c.341G>A	p.Arg114Gln	p.R114Q	ENST00000373644	NM_030625.2	114	cGa/cAa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778894	3778894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	152	456	0	ENST00000262367.5:c.6154C>T	p.Arg2052Trp	p.R2052W	ENST00000262367	NM_004380.2	2052	Cgg/Tgg																																																																															
MAX	4149	MSKCC	GRCh37	14	65560486	65560486	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	79	391	0	ENST00000358664.4:c.111C>G	p.Asp37Glu	p.D37E	ENST00000358664	NM_002382.4	37	gaC/gaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578283	7578283	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	178	500	0	ENST00000269305.4:c.566C>A	p.Ala189Asp	p.A189D	ENST00000269305	NM_001126112.2	189	gCc/gAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575175	48575175	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0029394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	50	280	0	ENST00000342988.3:c.369T>A	p.Cys123Ter	p.C123*	ENST00000342988	NM_005359.5	123	tgT/tgA																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323193	31323193	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	33	536	0	ENST00000412585.2:c.796C>T	p.Gln266Ter	p.Q266*	ENST00000412585	NM_005514.6	266	Cag/Tag																																																																															
AR	367	MSKCC	GRCh37	X	66765070	66765070	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	48	623	2	ENST00000374690.3:c.82C>T	p.Gln28Ter	p.Q28*	ENST00000374690	NM_000044.3	28	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	152	368	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	36	265	0	ENST00000349496.5:c.100G>C	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Cga																																																																															
MED12	9968	MSKCC	GRCh37	X	70338645	70338645	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	149	299	0	ENST00000374080.3:c.41T>C	p.Leu14Pro	p.L14P	ENST00000374080		14	cTg/cCg																																																																															
MED12	9968	MSKCC	GRCh37	X	70339327	70339327	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0029396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	42	191	0	ENST00000374080.3:c.204G>C	p.Lys68Asn	p.K68N	ENST00000374080		68	aaG/aaC																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413742	138413742	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769082299		P-0029396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	134	276	1	ENST00000289153.2:c.1778C>T	p.Ala593Val	p.A593V	ENST00000289153	NM_006219.2	593	gCg/gTg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798111	45798111	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	51	516	0	ENST00000372115.3:c.698G>T	p.Arg233Leu	p.R233L	ENST00000372115	NM_001048171.1	233	cGa/cTa																																																																															
IL10	3586	MSKCC	GRCh37	1	206942060	206942060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	79	295	0	ENST00000423557.1:c.458G>A	p.Gly153Asp	p.G153D	ENST00000423557	NM_000572.2	153	gGc/gAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793385	18793385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	69	382	0	ENST00000266497.5:c.4082C>T	p.Pro1361Leu	p.P1361L	ENST00000266497		1361	cCc/cTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047907	180047907	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	461	633	1	ENST00000261937.6:c.2268C>A	p.Cys756Ter	p.C756*	ENST00000261937	NM_182925.4	756	tgC/tgA																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128017009	128017009	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151216904		P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	50	498	1	ENST00000285398.2:c.2080G>A	p.Ala694Thr	p.A694T	ENST00000285398	NM_000122.1	694	Gct/Act																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	36	321	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	161	335	2	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653796	89653798	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	47	339	0	ENST00000371953.3:c.97_99delATT	p.Ile33del	p.I33del	ENST00000371953	NM_000314.4	32	ATT/-																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436127	56436127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138844366		P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	218	545	0	ENST00000407977.2:c.1010G>A	p.Arg337Gln	p.R337Q	ENST00000407977		337	cGa/cAa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	192	565	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37058999	37058999	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	135	379	2	ENST00000231790.2:c.793C>T	p.Arg265Cys	p.R265C	ENST00000231790	NM_000249.3	265	Cgt/Tgt																																																																															
TET1	80312	MSKCC	GRCh37	10	70441157	70441157	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	48	372	0	ENST00000373644.4:c.4832delA	p.Asn1611ThrfsTer13	p.N1611Tfs*13	ENST00000373644	NM_030625.2	1609	gAa/ga																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	80	241	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	185	474	1	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	204	304	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
NF1	4763	MSKCC	GRCh37	17	29552152	29552152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	87	221	0	ENST00000358273.4:c.1885G>A	p.Gly629Arg	p.G629R	ENST00000358273	NM_001042492.2	629	Ggg/Agg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	224	633	5	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255883	16255883	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	49	389	2	ENST00000375759.3:c.3154delA	p.Ile1052SerfsTer40	p.I1052Sfs*40	ENST00000375759	NM_015001.2	1050	Aaa/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822563	72822564	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	95	401	0	ENST00000268489.5:c.9609_9611dupGCA	p.Gln3204dup	p.Q3204dup	ENST00000268489	NM_006885.3	3204	caa/caGCAa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	36	87	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	172	438	2	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793252	33793253	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	22	124	0	ENST00000498907.2:c.68dupC	p.His24AlafsTer84	p.H24Afs*84	ENST00000498907	NM_004364.3	23	ccg/ccCg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	103	518	0	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856623	111856623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	57	141	0	ENST00000341259.2:c.674G>A	p.Arg225His	p.R225H	ENST00000341259	NM_005475.2	225	cGc/cAc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175957464	175957465	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	129	377	1	ENST00000367669.3:c.1931dup	p.Asn644LysfsTer17	p.N644Kfs*17	ENST00000367669	NM_022457.5	644	aac/aaAc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64132907	64132907	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	67	577	2	ENST00000334205.4:c.1046delC	p.Pro349HisfsTer26	p.P349Hfs*26	ENST00000334205	NM_003942.2	347	agC/ag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416900	416900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	92	348	0	ENST00000399788.2:c.3650G>A	p.Arg1217Gln	p.R1217Q	ENST00000399788	NM_001042603.1	1217	cGg/cAg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640853	3640853	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs117707719		P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	205	654	0	ENST00000294008.3:c.2786C>T	p.Pro929Leu	p.P929L	ENST00000294008	NM_032444.2	929	cCg/cTg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264348	46264348	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	32	344	0	ENST00000371998.3:c.1400delC	p.Pro467HisfsTer15	p.P467Hfs*15	ENST00000371998		465	agC/ag																																																																															
NF1	4763	MSKCC	GRCh37	17	29683558	29683558	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	166	420	2	ENST00000358273.4:c.7701del	p.Met2569Ter	p.M2569*	ENST00000358273	NM_001042492.2	2566	Ccc/cc																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225731	26225731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	203	486	0	ENST00000360408.1:c.349C>T	p.Arg117Cys	p.R117C	ENST00000360408	NM_003532.2	117	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112173955	112173956	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	115	276	0	ENST00000257430.4:c.2667dup	p.Val890SerfsTer22	p.V890Sfs*22	ENST00000257430	NM_000038.5	888	-/A																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211898	36211899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775294431		P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	292	873	1	ENST00000222270.7:c.1656dup	p.Lys553GlnfsTer46	p.K553Qfs*46	ENST00000222270	NM_014727.1	550	gac/gaCc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021818	71021818	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs869025203		P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	63	140	0	ENST00000318789.4:c.1540C>T	p.Arg514Cys	p.R514C	ENST00000318789	NM_032682.5	514	Cgt/Tgt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119769	70119769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	204	552	0	ENST00000245479.2:c.774del	p.Leu259CysfsTer20	p.L259Cfs*20	ENST00000245479	NM_000346.3	257	cgC/cg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273026	18273026	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	169	672	2	ENST00000222254.8:c.921delC	p.Lys308ArgfsTer33	p.K308Rfs*33	ENST00000222254	NM_005027.3	306	Ccc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440542	49440542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	270	678	3	ENST00000301067.7:c.4268G>A	p.Arg1423His	p.R1423H	ENST00000301067	NM_003482.3	1423	cGt/cAt																																																																															
ERF	2077	MSKCC	GRCh37	19	42753149	42753151	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs199960550		P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	192	531	7	ENST00000222329.4:c.1113_1115del	p.Ser373del	p.S373del	ENST00000222329	NM_006494.2	371	tcTTCc/tcc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40864479	40864479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	228	600	0	ENST00000428826.2:c.1229C>T	p.Pro410Leu	p.P410L	ENST00000428826		410	cCc/cTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211883	36211883	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202218975		P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	310	843	2	ENST00000222270.7:c.1634G>A	p.Arg545Gln	p.R545Q	ENST00000222270	NM_014727.1	545	cGa/cAa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52438586	52438586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	100	337	4	ENST00000460680.1:c.1133C>T	p.Ala378Val	p.A378V	ENST00000460680	NM_004656.3	378	gCg/gTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254933	16254933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	157	399	4	ENST00000375759.3:c.2198G>A	p.Arg733His	p.R733H	ENST00000375759	NM_015001.2	733	cGt/cAt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16263810	16263810	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	67	497	0	ENST00000375759.3:c.10182del	p.Thr3395ProfsTer5	p.T3395Pfs*5	ENST00000375759	NM_015001.2	3393	aaG/aa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937950	36937950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	194	690	2	ENST00000361632.4:c.886G>A	p.Gly296Arg	p.G296R	ENST00000361632		296	Ggg/Agg																																																																															
ATM	472	MSKCC	GRCh37	11	108203511	108203511	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	81	257	0	ENST00000278616.4:c.7811G>T	p.Arg2604Ile	p.R2604I	ENST00000278616	NM_000051.3	2604	aGa/aTa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344821	118344821	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	93	302	0	ENST00000534358.1:c.2947C>A	p.Leu983Met	p.L983M	ENST00000534358	NM_005933.3	983	Ctg/Atg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864745	57864745	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	152	601	0	ENST00000228682.2:c.2222A>G	p.Glu741Gly	p.E741G	ENST00000228682	NM_005269.2	741	gAg/gGg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609880	81609880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	91	252	0	ENST00000298171.2:c.1478G>A	p.Gly493Glu	p.G493E	ENST00000298171	NM_000369.2	493	gGg/gAg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610452	81610452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	116	291	0	ENST00000298171.2:c.2050G>A	p.Ala684Thr	p.A684T	ENST00000298171	NM_000369.2	684	Gcc/Acc																																																																															
B2M	567	MSKCC	GRCh37	15	45003773	45003773	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	301	356	1	ENST00000558401.1:c.29T>C	p.Leu10Pro	p.L10P	ENST00000558401	NM_004048.2	10	cTc/cCc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632597	3632597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	236	650	0	ENST00000294008.3:c.5251G>A	p.Asp1751Asn	p.D1751N	ENST00000294008	NM_032444.2	1751	Gac/Aac																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14021985	14021985	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	79	494	0	ENST00000311895.7:c.685A>G	p.Ile229Val	p.I229V	ENST00000311895	NM_005236.2	229	Ata/Gta																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782248	56782248	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	162	397	0	ENST00000308159.5:c.89A>G	p.Glu30Gly	p.E30G	ENST00000308159	NM_014669.4	30	gAa/gGa																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870594	40870594	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	62	583	0	ENST00000428826.2:c.809C>A	p.Pro270His	p.P270H	ENST00000428826		270	cCc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436008	56436008	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	29	290	0	ENST00000407977.2:c.1129C>A	p.Pro377Thr	p.P377T	ENST00000407977		377	Cca/Aca																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78599504	78599504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	187	349	0	ENST00000306801.3:c.176G>A	p.Ser59Asn	p.S59N	ENST00000306801	NM_020761.2	59	aGt/aAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610211	10610211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	265	643	0	ENST00000171111.5:c.499G>A	p.Val167Ile	p.V167I	ENST00000171111	NM_203500.1	167	Gtt/Att																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152064	11152064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	207	457	0	ENST00000344626.4:c.4252G>A	p.Asp1418Asn	p.D1418N	ENST00000344626	NM_003072.3	1418	Gac/Aac																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945448	17945448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	70	559	0	ENST00000458235.1:c.2282C>T	p.Ala761Val	p.A761V	ENST00000458235	NM_000215.3	761	gCc/gTc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523021	25523021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	162	562	0	ENST00000264709.3:c.164G>A	p.Arg55His	p.R55H	ENST00000264709	NM_175629.2	55	cGc/cAc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46608817	46608817	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	177	630	0	ENST00000263734.3:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000263734	NM_001430.4	710	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022247	31022247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	105	273	0	ENST00000375687.4:c.1732C>T	p.Arg578Cys	p.R578C	ENST00000375687	NM_015338.5	578	Cgt/Tgt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022680	31022680	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	142	592	0	ENST00000375687.4:c.2165C>A	p.Pro722His	p.P722H	ENST00000375687	NM_015338.5	722	cCt/cAt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31368253	31368253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	59	510	1	ENST00000328111.2:c.124C>A	p.Arg42Ser	p.R42S	ENST00000328111	NM_006892.3	42	Cgc/Agc																																																																															
SRC	6714	MSKCC	GRCh37	20	36031586	36031586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	166	489	2	ENST00000358208.4:c.1415G>A	p.Arg472His	p.R472H	ENST00000358208		472	cGc/cAc																																																																															
VHL	7428	MSKCC	GRCh37	3	10188272	10188272	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	194	556	0	ENST00000256474.2:c.415T>C	p.Ser139Pro	p.S139P	ENST00000256474	NM_000551.3	139	Tct/Cct																																																																															
TET2	54790	MSKCC	GRCh37	4	106156562	106156562	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	117	319	0	ENST00000380013.4:c.1463A>G	p.Asn488Ser	p.N488S	ENST00000380013	NM_001127208.2	488	aAt/aGt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526618	31526618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	150	501	0	ENST00000344624.3:c.422C>T	p.Thr141Ile	p.T141I	ENST00000344624		141	aCt/aTt																																																																															
APC	324	MSKCC	GRCh37	5	112177922	112177922	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	49	330	0	ENST00000257430.4:c.6631G>T	p.Gly2211Cys	p.G2211C	ENST00000257430	NM_000038.5	2211	Ggc/Tgc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520479	176520479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	278	660	1	ENST00000292408.4:c.1324G>A	p.Gly442Ser	p.G442S	ENST00000292408	NM_213647.1	442	Ggc/Agc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048157	180048157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	69	598	2	ENST00000261937.6:c.2116G>A	p.Ala706Thr	p.A706T	ENST00000261937	NM_182925.4	706	Gcg/Acg																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778214	27778214	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	148	528	0	ENST00000369163.2:c.363G>T	p.Met121Ile	p.M121I	ENST00000369163	NM_003536.2	121	atG/atT																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289112	33289112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	58	566	0	ENST00000374542.5:c.440del	p.Pro147LeufsTer82	p.P147Lfs*82	ENST00000374542	NM_001141970.1	147	cCt/ct																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200459	138200460	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	46	423	0	ENST00000237289.4:c.1880_1881delGT	p.Cys627PhefsTer44	p.C627Ffs*44	ENST00000237289	NM_001270507.1	626	cTG/c																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370942	55370942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	209	615	2	ENST00000297316.4:c.244G>A	p.Glu82Lys	p.E82K	ENST00000297316	NM_022454.3	82	Gag/Aag																																																																															
ABL1	25	MSKCC	GRCh37	9	133760004	133760004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	85	740	0	ENST00000318560.5:c.2329del	p.Arg777GlufsTer4	p.R777Efs*4	ENST00000318560	NM_005157.4	776	aCc/ac																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771794	135771794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	241	546	1	ENST00000298552.3:c.3323G>A	p.Gly1108Asp	p.G1108D	ENST00000298552	NM_001162426.1	1108	gGc/gAc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300005	137300005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	96	547	1	ENST00000481739.1:c.290C>A	p.Pro97His	p.P97H	ENST00000481739	NM_002957.4	97	cCt/cAt																																																																															
SDHA	6389	MSKCC	GRCh37	5	231112	231112	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	37	245	0	ENST00000264932.6:c.892A>G	p.Thr298Ala	p.T298A	ENST00000264932	NM_004168.2	298	Aca/Gca																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	130	457	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	173	656	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	145	393	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	173	440	5	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	453	629	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
CASP8	841	MSKCC	GRCh37	2	202151289	202151290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	168	500	0	ENST00000358485.4:c.1596dupA	p.Leu533ThrfsTer6	p.L533Tfs*6	ENST00000358485	NM_001080125.1	530	aga/agAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	267	663	3	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	135	388	0	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	213	643	10	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	209	648	4	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	221	692	10	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																															
B2M	567	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	80	222	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
CASP8	841	MSKCC	GRCh37	2	202141632	202141632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	196	535	0	ENST00000358485.4:c.920G>A	p.Arg307Gln	p.R307Q	ENST00000358485	NM_001080125.1	307	cGg/cAg																																																																															
MST1	4485	MSKCC	GRCh37	3	49723126	49723128	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	238	585	0	ENST00000449682.2:c.1288_1290delGAG	p.Glu430del	p.E430del	ENST00000449682	NM_020998.3	430	GAG/-																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80336294	80336294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	141	369	0	ENST00000286548.4:c.1025C>T	p.Ala342Val	p.A342V	ENST00000286548	NM_002072.3	342	gCt/gTt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778455	3778455	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	354	776	1	ENST00000262367.5:c.6593T>A	p.Leu2198Gln	p.L2198Q	ENST00000262367	NM_004380.2	2198	cTg/cAg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37676268	37676268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	240	708	0	ENST00000447079.4:c.3023G>A	p.Arg1008Gln	p.R1008Q	ENST00000447079	NM_015083.1	1008	cGg/cAg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11319442	11319442	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769877976		P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	72	495	1	ENST00000361445.4:c.25G>A	p.Ala9Thr	p.A9T	ENST00000361445	NM_004958.3	9	Gcc/Acc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405806	157405806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	101	304	0	ENST00000346085.5:c.2048G>A	p.Gly683Asp	p.G683D	ENST00000346085	NM_020732.3	683	gGc/gAc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	536	698	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859006	57859006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	277	685	0	ENST00000228682.2:c.502C>T	p.Pro168Ser	p.P168S	ENST00000228682	NM_005269.2	168	Cct/Tct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	278	874	7	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986865	36986865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	118	175	0	ENST00000354822.5:c.824C>T	p.Pro275Leu	p.P275L	ENST00000354822	NM_001079668.2	275	cCg/cTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231345	5231345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	203	610	3	ENST00000357368.4:c.2131G>A	p.Val711Met	p.V711M	ENST00000357368	NM_002850.3	711	Gtg/Atg																																																																															
IRF4	3662	MSKCC	GRCh37	6	401492	401492	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752393433		P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	134	311	0	ENST00000380956.4:c.814G>A	p.Glu272Lys	p.E272K	ENST00000380956	NM_001195286.1	272	Gag/Aag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190752	11190754	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	231	593	0	ENST00000361445.4:c.5445_5447del	p.Lys1816del	p.K1816del	ENST00000361445	NM_004958.3	1815	aaGAAa/aaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16248819	16248819	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	51	535	0	ENST00000375759.3:c.1828del	p.Tyr610MetfsTer4	p.Y610Mfs*4	ENST00000375759	NM_015001.2	609	Ttt/tt																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45795027	45795027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	254	552	0	ENST00000372115.3:c.1559G>T	p.Arg520Leu	p.R520L	ENST00000372115	NM_001048171.1	520	cGg/cTg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797856	45797856	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	208	545	0	ENST00000372115.3:c.873del	p.Cys292AlafsTer13	p.C292Afs*13	ENST00000372115	NM_001048171.1	291	ctG/ct																																																																															
JUN	3725	MSKCC	GRCh37	1	59247929	59247929	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	266	708	7	ENST00000371222.2:c.814del	p.Arg272GlyfsTer13	p.R272Gfs*13	ENST00000371222	NM_002228.3	272	Agg/gg																																																																															
MDM4	4194	MSKCC	GRCh37	1	204512038	204512038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	31	385	1	ENST00000367182.3:c.638G>T	p.Arg213Ile	p.R213I	ENST00000367182	NM_001278516.1	213	aGa/aTa																																																																															
SUFU	51684	MSKCC	GRCh37	10	104263914	104263914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	25	69	0	ENST00000369902.3:c.5C>T	p.Ala2Val	p.A2V	ENST00000369902	NM_016169.3	2	gCg/gTg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999297	100999297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	243	794	1	ENST00000325455.5:c.505G>A	p.Gly169Arg	p.G169R	ENST00000325455	NM_001202474.3	169	Ggg/Agg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21643235	21643235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	72	722	1	ENST00000421138.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000421138		98	Gaa/Aaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445166	49445166	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	317	821	0	ENST00000301067.7:c.2300A>T	p.Glu767Val	p.E767V	ENST00000301067	NM_003482.3	767	gAg/gTg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988192	36988192	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	54	461	0	ENST00000354822.5:c.461C>A	p.Ala154Asp	p.A154D	ENST00000354822	NM_001079668.2	154	gCc/gAc																																																																															
B2M	567	MSKCC	GRCh37	15	45007645	45007645	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	102	283	0	ENST00000558401.1:c.92del	p.Ser31TyrfsTer13	p.S31Yfs*13	ENST00000558401	NM_004048.2	31	tCa/ta																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678514	88678514	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	148	372	0	ENST00000360948.2:c.1022C>A	p.Pro341His	p.P341H	ENST00000360948	NM_001012338.2	341	cCt/cAt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10249237	10249239	+	inframe_deletion	In_Frame_Del	DEL	GAT	GAT	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	175	564	0	ENST00000340748.4:c.3943_3945del	p.Ile1315del	p.I1315del	ENST00000340748		1315	ATC/-																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288780	15288780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	64	109	0	ENST00000263388.2:c.3959C>T	p.Ser1320Leu	p.S1320L	ENST00000263388	NM_000435.2	1320	tCg/tTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17952246	17952246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	244	671	1	ENST00000458235.1:c.1094C>T	p.Pro365Leu	p.P365L	ENST00000458235	NM_000215.3	365	cCg/cTg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260136	19260136	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142232568		P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	280	741	0	ENST00000162023.5:c.157C>T	p.Arg53Cys	p.R53C	ENST00000162023		53	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213588	36213589	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	331	934	0	ENST00000222270.7:c.2693_2694del	p.Leu898ProfsTer18	p.L898Pfs*18	ENST00000222270	NM_014727.1	897	cCT/c																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919073	50919073	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	190	667	0	ENST00000440232.2:c.2810T>C	p.Met937Thr	p.M937T	ENST00000440232	NM_002691.3	937	aTg/aCg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25457216	25457216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	191	632	2	ENST00000264709.3:c.2671C>T	p.Arg891Trp	p.R891W	ENST00000264709	NM_175629.2	891	Cgg/Tgg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39283898	39283898	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	190	570	1	ENST00000402219.2:c.455T>A	p.Ile152Lys	p.I152K	ENST00000402219	NM_005633.3	152	aTa/aAa																																																																															
RAF1	5894	MSKCC	GRCh37	3	12627293	12627293	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	140	375	0	ENST00000251849.4:c.1423T>G	p.Phe475Val	p.F475V	ENST00000251849	NM_002880.3	475	Ttt/Gtt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37038129	37038129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	114	278	0	ENST00000231790.2:c.136A>G	p.Ser46Gly	p.S46G	ENST00000231790	NM_000249.3	46	Agt/Ggt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71096155	71096155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	122	356	0	ENST00000318789.4:c.602G>A	p.Arg201His	p.R201H	ENST00000318789	NM_032682.5	201	cGc/cAc																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998164	169998165	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	260	711	0	ENST00000295797.4:c.861dup	p.Glu288ArgfsTer4	p.E288Rfs*4	ENST00000295797	NM_002740.5	285	-/A																																																																															
KIT	3815	MSKCC	GRCh37	4	55575693	55575693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	140	406	0	ENST00000288135.5:c.1219G>T	p.Val407Phe	p.V407F	ENST00000288135	NM_000222.2	407	Gtt/Ttt																																																																															
SDHA	6389	MSKCC	GRCh37	5	231111	231111	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	193	279	0	ENST00000264932.6:c.891del	p.Thr298GlnfsTer50	p.T298Qfs*50	ENST00000264932	NM_004168.2	297	ccT/cc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177585	56177585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	152	364	1	ENST00000399503.3:c.2558G>A	p.Arg853His	p.R853H	ENST00000399503	NM_005921.1	853	cGt/cAt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497231	149497231	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	219	631	0	ENST00000261799.4:c.3087A>C	p.Lys1029Asn	p.K1029N	ENST00000261799	NM_002609.3	1029	aaA/aaC																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180948	32180948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	166	609	1	ENST00000375023.3:c.2402G>A	p.Arg801His	p.R801H	ENST00000375023	NM_004557.3	801	cGc/cAc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821146	32821146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	275	820	0	ENST00000354258.4:c.448C>A	p.Gln150Lys	p.Q150K	ENST00000354258	NM_000593.5	150	Cag/Aag																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38272418	38272418	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	109	370	0	ENST00000425967.3:c.1949G>C	p.Cys650Ser	p.C650S	ENST00000425967	NM_001174067.1	650	tGc/tCc																																																																															
LYN	4067	MSKCC	GRCh37	8	56879436	56879436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	225	581	0	ENST00000519728.1:c.953T>C	p.Ile318Thr	p.I318T	ENST00000519728	NM_002350.3	318	aTc/aCc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981921	70981921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	480	718	2	ENST00000276594.2:c.175G>A	p.Ala59Thr	p.A59T	ENST00000276594	NM_024504.3	59	Gca/Aca																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128322000	128322000	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	244	732	0	ENST00000265960.3:c.760A>G	p.Ile254Val	p.I254V	ENST00000265960	NM_001006617.1	254	Att/Gtt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932321	39932321	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	331	870	1	ENST00000378444.4:c.2278C>A	p.Leu760Ile	p.L760I	ENST00000378444	NM_001123385.1	760	Ctc/Atc																																																																															
ARAF	369	MSKCC	GRCh37	X	47428208	47428208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	89	631	0	ENST00000377045.4:c.1168C>A	p.Leu390Ile	p.L390I	ENST00000377045	NM_001654.4	390	Ctc/Atc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226130	53226130	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	167	585	0	ENST00000375401.3:c.2719del	p.Arg907GlyfsTer28	p.R907Gfs*28	ENST00000375401	NM_004187.3	907	Agg/gg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53230751	53230751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	245	633	3	ENST00000375401.3:c.2042G>A	p.Arg681Gln	p.R681Q	ENST00000375401	NM_004187.3	681	cGa/cAa																																																																															
AR	367	MSKCC	GRCh37	X	66941783	66941783	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	58	516	0	ENST00000374690.3:c.2427A>C	p.Lys809Asn	p.K809N	ENST00000374690	NM_000044.3	809	aaA/aaC																																																																															
ATRX	546	MSKCC	GRCh37	X	76939832	76939832	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	187	459	0	ENST00000373344.5:c.916A>T	p.Asn306Tyr	p.N306Y	ENST00000373344	NM_000489.3	306	Aat/Tat																																																																															
ATRX	546	MSKCC	GRCh37	X	76939999	76939999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	186	621	1	ENST00000373344.5:c.749G>A	p.Arg250Gln	p.R250Q	ENST00000373344	NM_000489.3	250	cGa/cAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0029401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	134	548	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0029401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	198	577	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798968	45798968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	90	608	2	ENST00000372115.3:c.335G>A	p.Arg112Gln	p.R112Q	ENST00000372115	NM_001048171.1	112	cGg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0029432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	25	423	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0029432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	118	445	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913396		P-0029432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	39	254	0	ENST00000349496.5:c.95A>T	p.Asp32Val	p.D32V	ENST00000349496	NM_001904.3	32	gAc/gTc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285805	46285805	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	40	344	0	ENST00000334344.6:c.5073T>G	p.Cys1691Trp	p.C1691W	ENST00000334344	NM_152641.2	1691	tgT/tgG																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604786	48604787	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0029432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	52	395	0	ENST00000342988.3:c.1609_1610del	p.Asp537ArgfsTer39	p.D537Rfs*39	ENST00000342988	NM_005359.5	536	ctAGac/ctac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0029433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	211	453	1	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942068	71942069	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0029433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	140	763	1	ENST00000298229.2:c.1332_1333delinsAA	p.Trp445Arg	p.W445R	ENST00000298229	NM_001567.3	444	tcCTgg/tcAAgg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95590765	95590765	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	55	345	0	ENST00000343455.3:c.1144G>T	p.Glu382Ter	p.E382*	ENST00000343455	NM_177438.2	382	Gaa/Taa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191298	185191298	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	56	500	0	ENST00000265026.3:c.2179G>T	p.Asp727Tyr	p.D727Y	ENST00000265026	NM_004721.4	727	Gac/Tac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241706	55241707	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0029433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	238	554	0	ENST00000275493.2:c.2154_2155delinsTT	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	718	ctGGgc/ctTTgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0029438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	121	632	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	122	482	1	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878787	151878787	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	127	423	0	ENST00000262189.6:c.6158C>G	p.Ser2053Cys	p.S2053C	ENST00000262189	NM_170606.2	2053	tCt/tGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29687599	29687599	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	108	531	0	ENST00000358273.4:c.8255A>C	p.Glu2752Ala	p.E2752A	ENST00000358273	NM_001042492.2	2752	gAa/gCa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44945202	44945224	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GTTCTGAATGACTTCTGTGAAAA	GTTCTGAATGACTTCTGTGAAAA	-			P-0029438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	101	245	1	ENST00000377967.4:c.3528_3548+2del		p.VLNDFCEK1176fs	ENST00000377967	NM_021140.2	1176	GTTCTGAATGACTTCTGTGAAAAa/a																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0029449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	743	591	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0029449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	369	624	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71948695	71948695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	444	674	2	ENST00000298229.2:c.3407C>T	p.Ala1136Val	p.A1136V	ENST00000298229	NM_001567.3	1136	gCc/gTc																																																																															
RB1	5925	MSKCC	GRCh37	13	48937034	48937034	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	877	571	2	ENST00000267163.4:c.802G>T	p.Glu268Ter	p.E268*	ENST00000267163	NM_000321.2	268	Gaa/Taa																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082718	16082718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	28	60	0	ENST00000281043.3:c.532G>A	p.Glu178Lys	p.E178K	ENST00000281043	NM_005378.4	178	Gag/Aag																																																																															
TET2	54790	MSKCC	GRCh37	4	106193871	106193871	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	157	497	0	ENST00000380013.4:c.4333C>G	p.Gln1445Glu	p.Q1445E	ENST00000380013	NM_001127208.2	1445	Cag/Gag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0029451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	50	568	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	460	545	0	ENST00000346208.3:c.878T>G	p.Met293Arg	p.M293R	ENST00000346208		293	aTg/aGg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089777	27089777	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0029459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	230	525	0	ENST00000324856.7:c.2732+1G>A		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																																
RECQL4	9401	MSKCC	GRCh37	8	145741926	145741926	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	292	652	0	ENST00000428558.2:c.577C>T	p.Arg193Ter	p.R193*	ENST00000428558	NM_004260.3	193	Cga/Tga																																																																															
MST1	4485	MSKCC	GRCh37	3	49722761	49722761	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs62262682		P-0029466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	16	45	2	ENST00000449682.2:c.1478G>T	p.Arg493Leu	p.R493L	ENST00000449682	NM_020998.3	493	cGt/cTt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618715	37618716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	524	594	3	ENST00000447079.4:c.397dupA	p.Ser133LysfsTer24	p.S133Kfs*24	ENST00000447079	NM_015083.1	131	gaa/gAaa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389278	8389278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	76	700	1	ENST00000356435.5:c.4340G>A	p.Arg1447Gln	p.R1447Q	ENST00000356435		1447	cGg/cAg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86668002	86668002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	32	408	1	ENST00000274376.6:c.1766G>A	p.Arg589His	p.R589H	ENST00000274376	NM_002890.2	589	cGc/cAc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102206728	102206728	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	63	493	0	ENST00000263464.3:c.1356G>C	p.Met452Ile	p.M452I	ENST00000263464	NM_001165.4	452	atG/atC																																																																															
NF1	4763	MSKCC	GRCh37	17	29550566	29550585	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AATTTCTTCTTAAAAATAAG	AATTTCTTCTTAAAAATAAG	-			P-0029466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	78	398	0	ENST00000358273.4:c.1826_1845del	p.Lys609ThrfsTer4	p.K609Tfs*4	ENST00000358273	NM_001042492.2	609	aAATTTCTTCTTAAAAATAAG/a																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1976630	1976630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	81	771	1	ENST00000382891.5:c.3413G>T	p.Arg1138Leu	p.R1138L	ENST00000382891	NM_133335.3	1138	cGa/cTa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223802	53223802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	141	514	0	ENST00000375401.3:c.3557C>G	p.Ser1186Cys	p.S1186C	ENST00000375401	NM_004187.3	1186	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	264	779	2	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
UPF1	5976	MSKCC	GRCh37	19	18971159	18971159	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	252	668	0	ENST00000262803.5:c.2212C>A	p.Gln738Lys	p.Q738K	ENST00000262803	NM_002911.3	738	Cag/Aag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467433	66467434	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0029473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	94	279	0	ENST00000273854.3:c.835_836delinsTT	p.Glu279Leu	p.E279L	ENST00000273854	NM_004439.5	279	GAa/TTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	133	543	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	153	746	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513168	106513168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	85	331	0	ENST00000359195.3:c.2072T>C	p.Ile691Thr	p.I691T	ENST00000359195	NM_002649.2	691	aTt/aCt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974809	21974809	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	19	149	0	ENST00000304494.5:c.18del	p.Ser7AlafsTer19	p.S7Afs*19	ENST00000304494	NM_000077.4	6	ggG/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0029507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	80	331	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99452114	99452114	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	36	334	0	ENST00000268035.6:c.1448G>T	p.Gly483Val	p.G483V	ENST00000268035	NM_000875.3	483	gGg/gTg																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983028	149983028	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	106	481	0	ENST00000253339.5:c.3230A>T	p.Glu1077Val	p.E1077V	ENST00000253339		1077	gAa/gTa																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0029508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	57	440	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420090	49420090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	66	444	0	ENST00000301067.7:c.15659G>C	p.Arg5220Pro	p.R5220P	ENST00000301067	NM_003482.3	5220	cGc/cCc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061211	+	inframe_deletion	In_Frame_Del	DEL	GAAGCGCTTCTGGCGGCGCAA	GAAGCGCTTCTGGCGGCGCAA	-			P-0029508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	87	359	0	ENST00000250448.2:c.778_798del	p.Leu260_Phe266del	p.L260_F266del	ENST00000250448	NM_004496.3	260	TTGCGCCGCCAGAAGCGCTTC/-																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627544	37627545	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	73	553	0	ENST00000447079.4:c.1461dup	p.Glu488ArgfsTer6	p.E488Rfs*6	ENST00000447079	NM_015083.1	487	tcc/tCcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0029515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	87	376	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	30	368	0	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag																																																																															
NUP93	9688	MSKCC	GRCh37	16	56878430	56878430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	73	395	0	ENST00000308159.5:c.2369G>A	p.Arg790His	p.R790H	ENST00000308159	NM_014669.4	790	cGc/cAc																																																																															
TEK	7010	MSKCC	GRCh37	9	27190644	27190644	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	101	562	0	ENST00000380036.4:c.1445T>C	p.Leu482Pro	p.L482P	ENST00000380036	NM_000459.3	482	cTa/cCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0029522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	44	428	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0029522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	78	375	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	106	438	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56171040	56171040	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	55	211	0	ENST00000399503.3:c.1870delC	p.Gln624ArgfsTer32	p.Q624Rfs*32	ENST00000399503	NM_005921.1	623	tCc/tc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0029523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	16	250	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650368	48650368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	273	233	0	ENST00000376670.3:c.338G>A	p.Arg113His	p.R113H	ENST00000376670	NM_002049.3	113	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0029525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	84	518	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	64	430	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	20	449	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0029532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	18	447	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0029532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	8	272	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165688	47165688	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	12	400	1	ENST00000409792.3:c.438A>T	p.Lys146Asn	p.K146N	ENST00000409792	NM_014159.6	146	aaA/aaT																																																																															
MDM2	4193	MSKCC	GRCh37	12	69230517	69230517	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	63	324	0	ENST00000462284.1:c.906A>T	p.Glu302Asp	p.E302D	ENST00000462284	NM_002392.5	302	gaA/gaT																																																																															
FANCA	2175	MSKCC	GRCh37	16	89838180	89838180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	31	386	0	ENST00000389301.3:c.2057C>T	p.Ala686Val	p.A686V	ENST00000389301	NM_000135.2	686	gCt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0029535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	213	513	0	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
RAD51C	5889	MSKCC	GRCh37	17	56780598	56780598	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	56	433	0	ENST00000337432.4:c.613C>G	p.Leu205Val	p.L205V	ENST00000337432	NM_058216.2	205	Ctt/Gtt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211121	36211121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	102	692	0	ENST00000222270.7:c.872G>A	p.Gly291Glu	p.G291E	ENST00000222270	NM_014727.1	291	gGa/gAa																																																																															
INHA	3623	MSKCC	GRCh37	2	220439878	220439878	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	57	520	0	ENST00000243786.2:c.731C>G	p.Ser244Cys	p.S244C	ENST00000243786	NM_002191.3	244	tCt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112175447	112175447	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	63	226	0	ENST00000257430.4:c.4156A>T	p.Arg1386Ter	p.R1386*	ENST00000257430	NM_000038.5	1386	Aga/Tga																																																																															
JAK2	3717	MSKCC	GRCh37	9	5064896	5064896	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	23	299	0	ENST00000381652.3:c.1070G>C	p.Ser357Thr	p.S357T	ENST00000381652	NM_004972.3	357	aGc/aCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0029540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	207	646	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	47	340	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																															
RB1	5925	MSKCC	GRCh37	13	49033946	49033946	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	56	386	2	ENST00000267163.4:c.2083A>T	p.Met695Leu	p.M695L	ENST00000267163	NM_000321.2	695	Atg/Ttg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25964917	25964917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	64	379	0	ENST00000435504.4:c.4289C>T	p.Ser1430Phe	p.S1430F	ENST00000435504		1430	tCc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112175759	112175759	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	37	309	0	ENST00000257430.4:c.4468del	p.His1490IlefsTer17	p.H1490Ifs*17	ENST00000257430	NM_000038.5	1490	Cat/at																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0029543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	304	483	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784041	9784041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	130	504	0	ENST00000377346.4:c.2609G>T	p.Arg870Leu	p.R870L	ENST00000377346	NM_005026.3	870	cGa/cTa																																																																															
WT1	7490	MSKCC	GRCh37	11	32456263	32456263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	138	565	0	ENST00000332351.3:c.629C>T	p.Pro210Leu	p.P210L	ENST00000332351	NM_024426.4	210	cCc/cTc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0029545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	11	207	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																															
MDM4	4194	MSKCC	GRCh37	1	204506572	204506572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	36	409	0	ENST00000367182.3:c.358C>T	p.Leu120Phe	p.L120F	ENST00000367182	NM_001278516.1	120	Ctc/Ttc																																																																															
STK11	6794	MSKCC	GRCh37	19	1218414	1218414	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0029545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	50	450	0	ENST00000326873.7:c.291-2A>G		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151841926	151841926	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	18	276	0	ENST00000262189.6:c.14215C>T	p.Gln4739Ter	p.Q4739*	ENST00000262189	NM_170606.2	4739	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	13	578	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932813	39932813	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	36	404	0	ENST00000378444.4:c.1786C>T	p.Gln596Ter	p.Q596*	ENST00000378444	NM_001123385.1	596	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	448	498	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230523	46230523	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0029556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	66	345	0	ENST00000334344.6:c.773-1G>C		p.X258_splice	ENST00000334344	NM_152641.2	258																																																																																
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	284	680	0	ENST00000269305.4:c.472C>G	p.Arg158Gly	p.R158G	ENST00000269305	NM_001126112.2	158	Cgc/Ggc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106003	8106003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	48	477	0	ENST00000346208.3:c.823C>T	p.Arg275Trp	p.R275W	ENST00000346208		275	Cgg/Tgg																																																																															
ATRX	546	MSKCC	GRCh37	X	76938121	76938121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	112	587	0	ENST00000373344.5:c.2627C>G	p.Ser876Cys	p.S876C	ENST00000373344	NM_000489.3	876	tCt/tGt																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2493255	2493256	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0029556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	44	375	0	ENST00000355716.4:c.694+2dup		p.X232_splice	ENST00000355716	NM_003820.2	232																																																																																
IGF2	3481	MSKCC	GRCh37	11	2154832	2154832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	392	819	0	ENST00000434045.2:c.389G>T	p.Ser130Ile	p.S130I	ENST00000434045	NM_001127598.1	130	aGc/aTc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913531	32913531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	106	492	1	ENST00000380152.3:c.5039C>A	p.Ser1680Tyr	p.S1680Y	ENST00000380152		1680	tCt/tAt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103506107	103506107	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0029556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	53	277	1	ENST00000355739.4:c.265G>T	p.Val89Leu	p.V89L	ENST00000355739	NM_000123.3	89	Gtg/Ttg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993899	72993899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	68	484	0	ENST00000268489.5:c.146C>T	p.Pro49Leu	p.P49L	ENST00000268489	NM_006885.3	49	cCc/cTc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7983993	7983993	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	89	350	2	ENST00000319144.4:c.633C>A	p.Phe211Leu	p.F211L	ENST00000319144	NM_001139.2	211	ttC/ttA																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119875	70119875	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	293	659	0	ENST00000245479.2:c.877G>T	p.Glu293Ter	p.E293*	ENST00000245479	NM_000346.3	293	Gag/Tag																																																																															
INHA	3623	MSKCC	GRCh37	2	220439661	220439661	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	179	649	0	ENST00000243786.2:c.514G>T	p.Ala172Ser	p.A172S	ENST00000243786	NM_002191.3	172	Gct/Tct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927421	178927421	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	131	404	0	ENST00000263967.3:c.1184A>G	p.Asp395Gly	p.D395G	ENST00000263967	NM_006218.2	395	gAt/gGt																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250656	26250656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	78	500	0	ENST00000446824.2:c.178G>A	p.Glu60Lys	p.E60K	ENST00000446824	NM_021018.2	60	Gag/Aag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681100	30681100	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	154	327	0	ENST00000376406.3:c.619G>T	p.Gly207Cys	p.G207C	ENST00000376406	NM_014641.2	207	Ggc/Tgc																																																																															
ATRX	546	MSKCC	GRCh37	X	76938397	76938397	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	118	662	0	ENST00000373344.5:c.2351C>A	p.Ser784Tyr	p.S784Y	ENST00000373344	NM_000489.3	784	tCt/tAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	209	466	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59857686	59857686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	84	457	0	ENST00000259008.2:c.1871C>T	p.Ser624Leu	p.S624L	ENST00000259008	NM_032043.2	624	tCg/tTg																																																																															
ATM	472	MSKCC	GRCh37	11	108199925	108199925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	135	322	0	ENST00000278616.4:c.7267G>A	p.Glu2423Lys	p.E2423K	ENST00000278616	NM_000051.3	2423	Gaa/Aaa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95579559	95579559	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0029559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	51	308	0	ENST00000343455.3:c.1910A>T	p.Tyr637Phe	p.Y637F	ENST00000343455	NM_177438.2	637	tAc/tTc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465526	99465526	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	100	652	0	ENST00000268035.6:c.2351A>T	p.Asn784Ile	p.N784I	ENST00000268035	NM_000875.3	784	aAc/aTc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619170	1619170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	115	805	0	ENST00000344749.5:c.1390G>T	p.Ala464Ser	p.A464S	ENST00000344749	NM_001136139.2	464	Gcc/Tcc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10247785	10247785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	265	852	1	ENST00000340748.4:c.4417C>T	p.Arg1473Cys	p.R1473C	ENST00000340748		1473	Cgt/Tgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032513	47032529	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCTCCCCGTATAGATC	ATCTCCCCGTATAGATC	-			P-0029559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	61	458	0	ENST00000329236.7:c.202-14_204del		p.X68_splice	ENST00000329236	NM_001204466.1	68																																																																																
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0029561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	85	578	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	191	453	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	432799	432799	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	57	457	0	ENST00000399788.2:c.2117T>G	p.Leu706Arg	p.L706R	ENST00000399788	NM_001042603.1	706	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579440	7579441	+	frameshift_variant	Frame_Shift_Ins	INS	CC	CC	AAG			P-0029562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	138	677	0	ENST00000269305.4:c.246_247delinsCTT	p.Ala83PhefsTer66	p.A83Ffs*66	ENST00000269305	NM_001126112.2	82	ccGGcg/ccCTTcg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554409	63554410	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	70	610	0	ENST00000307078.5:c.329dup	p.Trp111LeufsTer30	p.W111Lfs*30	ENST00000307078	NM_004655.3	110	ttc/ttTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974769	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	44	177	0	ENST00000304494.5:c.58G>C	p.Ala20Pro	p.A20P	ENST00000304494	NM_000077.4	20	Gcg/Ccg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696450	47696450	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	189	468	0	ENST00000347630.2:c.373T>G	p.Phe125Val	p.F125V	ENST00000347630	NM_001007230.1	125	Ttt/Gtt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67663356	67663356	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	212	481	2	ENST00000264010.4:c.1757A>G	p.Glu586Gly	p.E586G	ENST00000264010	NM_006565.3	586	gAa/gGa																																																																															
RAB35	11021	MSKCC	GRCh37	12	120554424	120554425	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	A			P-0029563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	50	174	0	ENST00000229340.5:c.30_31delinsT	p.Lys10AsnfsTer48	p.K10Nfs*48	ENST00000229340	NM_006861.6	10	aaGCtg/aaTtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	303	610	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105748	27105748	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	116	396	0	ENST00000324856.7:c.5359G>T	p.Glu1787Ter	p.E1787*	ENST00000324856	NM_006015.4	1787	Gag/Tag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098975	178098975	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1328994103		P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	78	252	0	ENST00000397062.3:c.70T>C	p.Trp24Arg	p.W24R	ENST00000397062	NM_006164.4	24	Tgg/Cgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212611	36212611	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	373	818	1	ENST00000222270.7:c.2362G>T	p.Val788Leu	p.V788L	ENST00000222270	NM_014727.1	788	Gta/Tta																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735354	204735354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	42	225	1	ENST00000302823.3:c.155G>A	p.Gly52Asp	p.G52D	ENST00000302823	NM_005214.4	52	gGc/gAc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193107293	193107293	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	49	271	0	ENST00000367435.3:c.502G>T	p.Glu168Ter	p.E168*	ENST00000367435	NM_024529.4	168	Gaa/Taa																																																																															
BIRC3	330	MSKCC	GRCh37	11	102201868	102201868	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	74	440	0	ENST00000263464.3:c.1220G>C	p.Gly407Ala	p.G407A	ENST00000263464	NM_001165.4	407	gGa/gCa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436578	49436578	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	290	621	0	ENST00000301067.7:c.5728G>T	p.Gly1910Ter	p.G1910*	ENST00000301067	NM_003482.3	1910	Gga/Tga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900414	32900414	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	87	345	0	ENST00000380152.3:c.511G>T	p.Val171Leu	p.V171L	ENST00000380152		171	Gtg/Ttg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59821874	59821875	+	missense_variant	Missense_Mutation	DNP	CT	CT	TA			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	50	454	1	ENST00000259008.2:c.2175_2176delinsTA	p.Glu726Lys	p.E726K	ENST00000259008	NM_032043.2	725	gtAGaa/gtTAaa																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793197	33793197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	84	121	0	ENST00000498907.2:c.124C>T	p.Pro42Ser	p.P42S	ENST00000498907	NM_004364.3	42	Cct/Tct																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182580	99182580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	98	438	0	ENST00000074304.5:c.2383C>A	p.Gln795Lys	p.Q795K	ENST00000074304	NM_001134224.1	795	Cag/Aag																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204612	128204612	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	160	690	0	ENST00000341105.2:c.829A>T	p.Ser277Cys	p.S277C	ENST00000341105	NM_032638.4	277	Agc/Tgc																																																																															
TET2	54790	MSKCC	GRCh37	4	106157044	106157044	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	185	501	0	ENST00000380013.4:c.1945C>T	p.Gln649Ter	p.Q649*	ENST00000380013	NM_001127208.2	649	Caa/Taa																																																																															
SMO	6608	MSKCC	GRCh37	7	128849189	128849189	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	220	495	0	ENST00000249373.3:c.1417G>T	p.Asp473Tyr	p.D473Y	ENST00000249373	NM_005631.4	473	Gac/Tac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879018	151879018	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	222	540	0	ENST00000262189.6:c.5927A>C	p.Asp1976Ala	p.D1976A	ENST00000262189	NM_170606.2	1976	gAt/gCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	140	420	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0029579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	96	591	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974693	21974693	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	51	396	0	ENST00000304494.5:c.134delG	p.Gly45ValfsTer8	p.G45Vfs*8	ENST00000304494	NM_000077.4	45	gGt/gt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49924891	49924892	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	118	696	0	ENST00000296474.3:c.4051dup	p.Asp1351GlyfsTer20	p.D1351Gfs*20	ENST00000296474	NM_002447.2	1351	gac/gGac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0029583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	215	516	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	255	763	0	ENST00000269305.4:c.404G>C	p.Cys135Ser	p.C135S	ENST00000269305	NM_001126112.2	135	tGc/tCc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257640	19257640	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	88	716	0	ENST00000162023.5:c.586A>G	p.Thr196Ala	p.T196A	ENST00000162023		196	Aca/Gca																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0029584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	57	387	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0029584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	57	399	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0029584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	81	688	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0029584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	69	458	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140501260	140501260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	53	515	0	ENST00000288602.6:c.812G>A	p.Arg271His	p.R271H	ENST00000288602	NM_004333.4	271	cGt/cAt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395746	45395746	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	79	373	1	ENST00000262160.6:c.388C>T	p.Arg130Ter	p.R130*	ENST00000262160	NM_005901.5	130	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912189	114912189	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	68	487	0	ENST00000543371.1:c.1259G>T	p.Arg420Leu	p.R420L	ENST00000543371	NM_001198531.1	420	cGg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112175350	112175354	+	frameshift_variant	Frame_Shift_Del	DEL	ATTTT	ATTTT	-			P-0029584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	43	222	0	ENST00000257430.4:c.4059_4063del	p.Glu1353AspfsTer20	p.E1353Dfs*20	ENST00000257430	NM_000038.5	1353	gaATTTTct/gact																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	271	598	1	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41268762	41268762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	98	429	0	ENST00000349496.5:c.1000G>A	p.Glu334Lys	p.E334K	ENST00000349496	NM_001904.3	334	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112157613	112157613	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	95	403	1	ENST00000257430.4:c.1333C>T	p.Gln445Ter	p.Q445*	ENST00000257430	NM_000038.5	445	Cag/Tag																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727441	66727441	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	197	436	0	ENST00000307102.5:c.157T>C	p.Phe53Leu	p.F53L	ENST00000307102	NM_002755.3	53	Ttt/Ctt																																																																															
EZH2	2146	MSKCC	GRCh37	7	148506443	148506443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	51	347	0	ENST00000320356.2:c.2069G>A	p.Arg690His	p.R690H	ENST00000320356	NM_004456.4	690	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175770	112175771	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0029586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	86	273	0	ENST00000257430.4:c.4479_4480del	p.Glu1494LysfsTer19	p.E1494Kfs*19	ENST00000257430	NM_000038.5	1493	acGGaa/acaa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39249925	39249925	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	136	597	0	ENST00000402219.2:c.1644T>G	p.Ser548Arg	p.S548R	ENST00000402219	NM_005633.3	548	agT/agG																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405995	157405995	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	86	456	0	ENST00000346085.5:c.2237G>C	p.Ser746Thr	p.S746T	ENST00000346085	NM_020732.3	746	aGc/aCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	36	413	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0029588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	26	599	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	118	464	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0029589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	24	420	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0029589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	125	722	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs794727798		P-0029589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	101	640	0	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942739	44942739	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	27	306	0	ENST00000377967.4:c.3320delC	p.Pro1107LeufsTer13	p.P1107Lfs*13	ENST00000377967	NM_021140.2	1107	Cct/ct																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016559	12016559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	58	309	0	ENST00000353533.5:c.695C>T	p.Pro232Leu	p.P232L	ENST00000353533	NM_003010.3	232	cCt/cTt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176133021	176133021	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	84	382	0	ENST00000367669.3:c.572A>T	p.Glu191Val	p.E191V	ENST00000367669	NM_022457.5	191	gAa/gTa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89337228	89337228	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	122	589	0	ENST00000301030.4:c.7803G>C	p.Met2601Ile	p.M2601I	ENST00000301030	NM_001256183.1	2601	atG/atC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581197	48581197	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	92	420	0	ENST00000342988.3:c.503del	p.Gly168AspfsTer34	p.G168Dfs*34	ENST00000342988	NM_005359.5	167	gaG/ga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390211	89390211	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	55	307	0	ENST00000336596.2:c.960G>T	p.Met320Ile	p.M320I	ENST00000336596	NM_005233.5	320	atG/atT																																																																															
ESR1	2099	MSKCC	GRCh37	6	152415654	152415654	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	105	556	0	ENST00000206249.3:c.1504C>T	p.Gln502Ter	p.Q502*	ENST00000206249	NM_000125.3	502	Cag/Tag																																																																															
RB1	5925	MSKCC	GRCh37	13	48881505	48881505	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0029591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	80	311	0	ENST00000267163.4:c.227T>G	p.Leu76Ter	p.L76*	ENST00000267163	NM_000321.2	76	tTa/tGa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14038617	14038617	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	88	426	1	ENST00000311895.7:c.1942G>T	p.Gly648Cys	p.G648C	ENST00000311895	NM_005236.2	648	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579389	7579393	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAA	GGGAA	-			P-0029591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	100	637	0	ENST00000269305.4:c.294_298del	p.Ser99GlufsTer48	p.S99Efs*48	ENST00000269305	NM_001126112.2	98	ccTTCCCag/ccag																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45860904	45860904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	99	655	0	ENST00000391945.4:c.1291C>T	p.Pro431Ser	p.P431S	ENST00000391945	NM_000400.3	431	Ccc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	147	384	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	124	341	0	ENST00000244661.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000244661	NM_003537.3	106	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	202	523	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0029593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	58	301	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
IRF4	3662	MSKCC	GRCh37	6	397219	397219	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143144957		P-0029593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	133	318	0	ENST00000380956.4:c.604G>A	p.Gly202Ser	p.G202S	ENST00000380956	NM_001195286.1	202	Ggc/Agc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23637631	23637631	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45476495		P-0029593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	93	519	0	ENST00000261584.4:c.2674G>A	p.Glu892Lys	p.E892K	ENST00000261584	NM_024675.3	892	Gaa/Aaa																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170013720	170013720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	147	365	0	ENST00000295797.4:c.1439G>A	p.Arg480His	p.R480H	ENST00000295797	NM_002740.5	480	cGc/cAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351211	89351211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	233	528	0	ENST00000301030.4:c.1739C>T	p.Ser580Phe	p.S580F	ENST00000301030	NM_001256183.1	580	tCc/tTc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073773	8073773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	108	261	0	ENST00000377482.5:c.886C>T	p.Pro296Ser	p.P296S	ENST00000377482	NM_018948.3	296	Cca/Tca																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561462	9561462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	133	406	0	ENST00000353224.5:c.320C>T	p.Thr107Ile	p.T107I	ENST00000353224	NM_177990.2	107	aCc/aTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188950	32188950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	216	651	0	ENST00000375023.3:c.604C>T	p.Pro202Ser	p.P202S	ENST00000375023	NM_004557.3	202	Cca/Tca																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128201190	128201190	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	112	469	0	ENST00000265960.3:c.1545G>T	p.Lys515Asn	p.K515N	ENST00000265960	NM_001006617.1	515	aaG/aaT																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0029604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	79	437	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	38	401	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0029604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1267	122	679	0	ENST00000269305.4:c.376T>A	p.Tyr126Asn	p.Y126N	ENST00000269305	NM_001126112.2	126	Tac/Aac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692851	89692851	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	26	194	0	ENST00000371953.3:c.335T>C	p.Leu112Pro	p.L112P	ENST00000371953	NM_000314.4	112	cTa/cCa																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182641	38182641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	9	335	0	ENST00000396334.3:c.794T>C	p.Leu265Pro	p.L265P	ENST00000396334	NM_002468.4	265	cTg/cCg																																																																															
CBL	867	MSKCC	GRCh37	11	119148875	119148875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	83	260	0	ENST00000264033.4:c.1096-1G>T		p.X366_splice	ENST00000264033	NM_005188.3	366																																																																																
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	147	356	0	ENST00000371085.3:c.602G>T	p.Arg201Leu	p.R201L	ENST00000371085	NM_000516.4	201	cGt/cTt																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967047	18967047	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	85	642	0	ENST00000262803.5:c.1762T>C	p.Ser588Pro	p.S588P	ENST00000262803	NM_002911.3	588	Tcg/Ccg																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518446	69518446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	740	326	0	ENST00000294312.3:c.199G>T	p.Val67Phe	p.V67F	ENST00000294312	NM_005117.2	67	Gtc/Ttc																																																																															
ATM	472	MSKCC	GRCh37	11	108117853	108117853	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	96	372	0	ENST00000278616.4:c.1064A>T	p.Gln355Leu	p.Q355L	ENST00000278616	NM_000051.3	355	cAg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431486	49431486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	163	756	0	ENST00000301067.7:c.9653G>T	p.Gly3218Val	p.G3218V	ENST00000301067	NM_003482.3	3218	gGg/gTg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56493446	56493446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	56	412	0	ENST00000267101.3:c.2854G>A	p.Glu952Lys	p.E952K	ENST00000267101	NM_001982.3	952	Gag/Aag																																																																															
NF1	4763	MSKCC	GRCh37	17	29654826	29654826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	50	327	0	ENST00000358273.4:c.5578C>T	p.Leu1860Phe	p.L1860F	ENST00000358273	NM_001042492.2	1860	Ctt/Ttt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129911	55129911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	182	590	1	ENST00000257290.5:c.445C>A	p.Pro149Thr	p.P149T	ENST00000257290	NM_006206.4	149	Cct/Act																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157222513	157222513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	83	489	1	ENST00000346085.5:c.1780C>T	p.Pro594Ser	p.P594S	ENST00000346085	NM_020732.3	594	Cca/Tca																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522253	157522253	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	232	644	1	ENST00000346085.5:c.4525G>T	p.Glu1509Ter	p.E1509*	ENST00000346085	NM_020732.3	1509	Gag/Tag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946436	2946436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	155	783	2	ENST00000396946.4:c.3301C>T	p.Arg1101Cys	p.R1101C	ENST00000396946	NM_032415.4	1101	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0029609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	12	373	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0029612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	75	445	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217251	7217251	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	101	690	2	ENST00000380728.2:c.454C>T	p.Gln152Ter	p.Q152*	ENST00000380728		152	Caa/Taa																																																																															
CBFB	865	MSKCC	GRCh37	16	67100603	67100603	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	77	514	0	ENST00000412916.2:c.301A>G	p.Met101Val	p.M101V	ENST00000412916		101	Atg/Gtg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032525	12032526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	51	430	0	ENST00000353533.5:c.962dup	p.Lys322GlufsTer9	p.K322Efs*9	ENST00000353533	NM_003010.3	321	gtg/gTtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	217	521	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	201	734	2	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117669	70117669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	167	684	0	ENST00000245479.2:c.137C>T	p.Thr46Met	p.T46M	ENST00000245479	NM_000346.3	46	aCg/aTg																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793058	33793058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	233	368	0	ENST00000498907.2:c.263A>T	p.Gln88Leu	p.Q88L	ENST00000498907	NM_004364.3	88	cAg/cTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087395	27087396	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	146	632	0	ENST00000324856.7:c.1970dup	p.Ser658GlufsTer18	p.S658Efs*18	ENST00000324856	NM_006015.4	657	ctg/cTtg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777756	3777756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1482	95	990	2	ENST00000262367.5:c.7292C>T	p.Thr2431Met	p.T2431M	ENST00000262367	NM_004380.2	2431	aCg/aTg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745588	162745588	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	96	452	2	ENST00000367921.3:c.2003G>T	p.Arg668Leu	p.R668L	ENST00000367921	NM_006182.2	668	cGc/cTc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243778454	243778454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	136	346	0	ENST00000263826.5:c.571G>A	p.Ala191Thr	p.A191T	ENST00000263826	NM_005465.4	191	Gca/Aca																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856196	111856196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	59	340	3	ENST00000341259.2:c.247C>T	p.Arg83Trp	p.R83W	ENST00000341259	NM_005475.2	83	Cgg/Tgg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420205	88420205	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	50	507	0	ENST00000360948.2:c.2481G>C	p.Leu827Phe	p.L827F	ENST00000360948	NM_001012338.2	827	ttG/ttC																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085890	16085890	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	191	485	0	ENST00000281043.3:c.1066C>A	p.Pro356Thr	p.P356T	ENST00000281043	NM_005378.4	356	Cca/Aca																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470462	25470462	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	231	648	0	ENST00000264709.3:c.1012G>A	p.Val338Met	p.V338M	ENST00000264709	NM_175629.2	338	Gtg/Atg																																																																															
ALK	238	MSKCC	GRCh37	2	29456524	29456524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	363	625	0	ENST00000389048.3:c.2394C>A	p.Asn798Lys	p.N798K	ENST00000389048	NM_004304.4	798	aaC/aaA																																																																															
XPO1	7514	MSKCC	GRCh37	2	61715319	61715319	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	222	736	0	ENST00000401558.2:c.2294G>T	p.Arg765Leu	p.R765L	ENST00000401558	NM_003400.3	765	cGa/cTa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99180036	99180036	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	388	611	0	ENST00000074304.5:c.1979G>C	p.Ser660Thr	p.S660T	ENST00000074304	NM_001134224.1	660	aGc/aCc																																																																															
ATR	545	MSKCC	GRCh37	3	142215215	142215215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	78	245	1	ENST00000350721.4:c.5886G>T	p.Trp1962Cys	p.W1962C	ENST00000350721	NM_001184.3	1962	tgG/tgT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509760	187509761	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	36	200	0	ENST00000441802.2:c.13752_13753delinsTT	p.Gln4584_His4585delinsHisTyr	p.Q4584_H4585delinsHY	ENST00000441802	NM_005245.3	4584	caGCac/caTTac																																																																															
SDHA	6389	MSKCC	GRCh37	5	233619	233619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	43	334	0	ENST00000264932.6:c.923C>T	p.Thr308Met	p.T308M	ENST00000264932	NM_004168.2	308	aCg/aTg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31449511	31449511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	56	297	0	ENST00000344624.3:c.2698C>T	p.Pro900Ser	p.P900S	ENST00000344624		900	Cca/Tca																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645169	86645169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	60	294	0	ENST00000274376.6:c.1241G>T	p.Arg414Leu	p.R414L	ENST00000274376	NM_002890.2	414	cGg/cTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151893097	151893097	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	58	298	1	ENST00000262189.6:c.4274-1G>T		p.X1425_splice	ENST00000262189	NM_170606.2	1425																																																																																
PREX2	80243	MSKCC	GRCh37	8	69104759	69104759	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs139672596		P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	50	414	1	ENST00000288368.4:c.4603C>T	p.Arg1535Trp	p.R1535W	ENST00000288368	NM_024870.2	1535	Cgg/Tgg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069098	5069099	+	missense_variant	Missense_Mutation	DNP	AG	AG	TT			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	80	448	1	ENST00000381652.3:c.1403_1404delinsTT	p.Lys468Ile	p.K468I	ENST00000381652	NM_004972.3	468	aAG/aTT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499763	8499763	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	153	514	0	ENST00000356435.5:c.2206G>T	p.Val736Leu	p.V736L	ENST00000356435		736	Gtg/Ttg																																																																															
TEK	7010	MSKCC	GRCh37	9	27190611	27190611	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	65	654	1	ENST00000380036.4:c.1412T>A	p.Phe471Tyr	p.F471Y	ENST00000380036	NM_000459.3	471	tTt/tAt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209627	98209627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	142	450	1	ENST00000331920.6:c.3911G>T	p.Arg1304Met	p.R1304M	ENST00000331920	NM_000264.3	1304	aGg/aTg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139820343	139820343	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	66	544	0	ENST00000247668.2:c.1496C>A	p.Thr499Lys	p.T499K	ENST00000247668	NM_021138.3	499	aCa/aAa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412756	63412756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	103	529	0	ENST00000330258.3:c.411G>T	p.Leu137Phe	p.L137F	ENST00000330258	NM_152424.3	137	ttG/ttT																																																																															
AR	367	MSKCC	GRCh37	X	66766414	66766414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	15	146	0	ENST00000374690.3:c.1426G>A	p.Gly476Arg	p.G476R	ENST00000374690	NM_000044.3	476	Gga/Aga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	97	489	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0029615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	139	756	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089574	27089574	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	127	647	0	ENST00000324856.7:c.2530C>T	p.Gln844Ter	p.Q844*	ENST00000324856	NM_006015.4	844	Cag/Tag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032479	12032480	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0029615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	40	349	0	ENST00000353533.5:c.915_916delinsAA	p.Phe305_Pro306delinsLeuThr	p.F305_P306delinsLT	ENST00000353533	NM_003010.3	305	ttTCct/ttAAct																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	120	412	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	115	443	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	150	523	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971069	21971069	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	51	391	0	ENST00000304494.5:c.289C>G	p.Leu97Val	p.L97V	ENST00000304494	NM_000077.4	97	Ctg/Gtg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28891687	28891687	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	67	596	0	ENST00000282397.4:c.3334C>A	p.Arg1112Ser	p.R1112S	ENST00000282397	NM_002019.4	1112	Cgc/Agc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828630	72828630	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	84	599	0	ENST00000268489.5:c.7951G>C	p.Glu2651Gln	p.E2651Q	ENST00000268489	NM_006885.3	2651	Gaa/Caa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37863276	37863324	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCCAGTCCCGAGACCCACCTGGACATGCTCCGCCACCTCTACCAGGG	CTGCCAGTCCCGAGACCCACCTGGACATGCTCCGCCACCTCTACCAGGG	-			P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	124	642	0	ENST00000269571.5:c.114_162del	p.Ser38ArgfsTer38	p.S38Rfs*38	ENST00000269571		36	cCTGCCAGTCCCGAGACCCACCTGGACATGCTCCGCCACCTCTACCAGGGc/cc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909736	50909736	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1185	96	797	1	ENST00000440232.2:c.1456A>T	p.Lys486Ter	p.K486*	ENST00000440232	NM_002691.3	486	Aag/Tag																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52724289	52724289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	72	536	0	ENST00000322088.6:c.1421G>T	p.Gly474Val	p.G474V	ENST00000322088	NM_014225.5	474	gGg/gTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733244	40733244	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	65	590	1	ENST00000373198.4:c.3562del	p.Gln1188ArgfsTer17	p.Q1188Rfs*17	ENST00000373198	NM_133170.3	1188	Cag/ag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86682652	86682652	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	25	293	0	ENST00000274376.6:c.2857A>G	p.Met953Val	p.M953V	ENST00000274376	NM_002890.2	953	Atg/Gtg																																																																															
MET	4233	MSKCC	GRCh37	7	116409820	116409820	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	49	305	0	ENST00000397752.3:c.2705A>T	p.Lys902Ile	p.K902I	ENST00000397752	NM_000245.2	902	aAa/aTa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391149	139391149	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	80	683	1	ENST00000277541.6:c.7042G>T	p.Gly2348Cys	p.G2348C	ENST00000277541	NM_017617.3	2348	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	488	697	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731167	162731167	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	563	440	0	ENST00000367921.3:c.1022G>T	p.Arg341Leu	p.R341L	ENST00000367921	NM_006182.2	341	cGa/cTa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32905132	32905132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	402	509	1	ENST00000380152.3:c.758G>T	p.Ser253Ile	p.S253I	ENST00000380152		253	aGt/aTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48955568	48955568	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	332	378	0	ENST00000267163.4:c.1684G>C	p.Ala562Pro	p.A562P	ENST00000267163	NM_000321.2	562	Gca/Cca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5218809	5218809	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0029625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	543	657	0	ENST00000357368.4:c.3924C>A	p.Asn1308Lys	p.N1308K	ENST00000357368	NM_002850.3	1308	aaC/aaA																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260135	19260135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	516	714	0	ENST00000162023.5:c.158G>T	p.Arg53Leu	p.R53L	ENST00000162023		53	cGc/cTc																																																																															
KIT	3815	MSKCC	GRCh37	4	55564503	55564503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	153	463	0	ENST00000288135.5:c.391G>T	p.Asp131Tyr	p.D131Y	ENST00000288135	NM_000222.2	131	Gac/Tac																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526981	31526981	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2310	580	675	0	ENST00000344624.3:c.59G>T	p.Arg20Leu	p.R20L	ENST00000344624		20	cGa/cTa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56152461	56152461	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	237	251	0	ENST00000399503.3:c.517T>A	p.Leu173Met	p.L173M	ENST00000399503	NM_005921.1	173	Ttg/Atg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412749	63412749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	330	288	0	ENST00000330258.3:c.418G>T	p.Gly140Cys	p.G140C	ENST00000330258	NM_152424.3	140	Ggc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	133	532	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0029637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	42	348	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028898	47028898	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0029637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	41	489	0	ENST00000329236.7:c.201+1G>T		p.X67_splice	ENST00000329236	NM_001204466.1	67																																																																																
E2F3	1871	MSKCC	GRCh37	6	20481530	20481530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	53	340	1	ENST00000346618.3:c.599G>T	p.Gly200Val	p.G200V	ENST00000346618	NM_001949.4	200	gGg/gTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714396	40714396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	60	528	1	ENST00000373198.4:c.4001G>T	p.Arg1334Ile	p.R1334I	ENST00000373198	NM_133170.3	1334	aGa/aTa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35857096	35857096	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	28	334	0	ENST00000303115.3:c.17C>G	p.Thr6Arg	p.T6R	ENST00000303115	NM_002185.3	6	aCa/aGa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262097	16262097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	91	333	1	ENST00000375759.3:c.9362G>A	p.Arg3121Gln	p.R3121Q	ENST00000375759	NM_015001.2	3121	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101472	27101472	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	208	863	0	ENST00000324856.7:c.4754T>C	p.Val1585Ala	p.V1585A	ENST00000324856	NM_006015.4	1585	gTa/gCa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939219	36939219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	190	751	1	ENST00000361632.4:c.490C>T	p.Arg164Trp	p.R164W	ENST00000361632		164	Cgg/Tgg																																																																															
MPL	4352	MSKCC	GRCh37	1	43804304	43804304	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763568293		P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	164	638	2	ENST00000372470.3:c.304C>T	p.Arg102Cys	p.R102C	ENST00000372470	NM_005373.2	102	Cgt/Tgt																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743758	46743760	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	205	771	0	ENST00000371975.4:c.2050_2052delTGT	p.Cys684del	p.C684del	ENST00000371975	NM_003579.3	683	cGTTgt/cgt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458436	120458436	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	144	594	2	ENST00000256646.2:c.6909delC	p.Ile2304LeufsTer2	p.I2304Lfs*2	ENST00000256646	NM_024408.3	2303	ccC/cc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468424	120468424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	153	635	0	ENST00000256646.2:c.4015G>A	p.Gly1339Arg	p.G1339R	ENST00000256646	NM_024408.3	1339	Ggg/Agg																																																																															
MCL1	4170	MSKCC	GRCh37	1	150549868	150549868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	100	448	0	ENST00000369026.2:c.1036G>A	p.Ala346Thr	p.A346T	ENST00000369026	NM_021960.4	346	Gca/Aca																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175956113	175956113	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	61	573	0	ENST00000367669.3:c.2099T>C	p.Val700Ala	p.V700A	ENST00000367669	NM_022457.5	700	gTt/gCt																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612921	228612921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	169	538	0	ENST00000366696.1:c.106G>A	p.Val36Met	p.V36M	ENST00000366696	NM_003493.2	36	Gtg/Atg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097781	8097781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	236	899	0	ENST00000346208.3:c.163G>A	p.Gly55Ser	p.G55S	ENST00000346208		55	Ggt/Agt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63662003	63662003	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	99	426	0	ENST00000279873.7:c.107T>C	p.Leu36Ser	p.L36S	ENST00000279873	NM_032199.2	36	tTg/tCg																																																																															
TET1	80312	MSKCC	GRCh37	10	70446284	70446284	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	167	660	2	ENST00000373644.4:c.5230del	p.Arg1744GlufsTer18	p.R1744Efs*18	ENST00000373644	NM_030625.2	1742	Aaa/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690802	89690802	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	23	353	0	ENST00000371953.3:c.210-1G>A		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																																
PTEN	5728	MSKCC	GRCh37	10	89690814	89690814	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	30	373	0	ENST00000371953.3:c.221G>C	p.Arg74Thr	p.R74T	ENST00000371953	NM_000314.4	74	aGa/aCa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692979	89692979	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	94	550	0	ENST00000371953.3:c.463T>A	p.Tyr155Asn	p.Y155N	ENST00000371953	NM_000314.4	155	Tat/Aat																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200491	67200491	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	207	690	0	ENST00000312629.5:c.685T>G	p.Phe229Val	p.F229V	ENST00000312629	NM_003952.2	229	Ttc/Gtc																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518084	69518084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	248	875	0	ENST00000294312.3:c.281G>A	p.Gly94Asp	p.G94D	ENST00000294312	NM_005117.2	94	gGc/gAc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588088	69588088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	146	558	0	ENST00000168712.1:c.610C>A	p.Pro204Thr	p.P204T	ENST00000168712	NM_002007.2	204	Ccc/Acc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	169	441	9	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18649053	18649053	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	53	498	0	ENST00000266497.5:c.2728A>G	p.Asn910Asp	p.N910D	ENST00000266497		910	Aat/Gat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	78	601	0	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46242662	46242662	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	37	447	1	ENST00000334344.6:c.1624C>T	p.Arg542Ter	p.R542*	ENST00000334344	NM_152641.2	542	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432206	49432206	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	276	892	0	ENST00000301067.7:c.8933C>A	p.Pro2978His	p.P2978H	ENST00000301067	NM_003482.3	2978	cCt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49439750	49439750	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs200119692		P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	146	642	0	ENST00000301067.7:c.4694C>T	p.Ala1565Val	p.A1565V	ENST00000301067	NM_003482.3	1565	gCg/gTg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28578215	28578216	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	146	602	0	ENST00000241453.7:c.2955_2956delTC	p.Pro986AlafsTer27	p.P986Afs*27	ENST00000241453	NM_004119.2	985	tcTCcg/tccg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32915054	32915054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	73	611	1	ENST00000380152.3:c.6566del	p.Asn2189ThrfsTer2	p.N2189Tfs*2	ENST00000380152		2188	Aaa/aa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135384	30135384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	91	477	0	ENST00000331968.5:c.434G>A	p.Arg145His	p.R145H	ENST00000331968	NM_002742.2	145	cGt/cAt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987024	36987024	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	166	699	0	ENST00000354822.5:c.665A>G	p.Glu222Gly	p.E222G	ENST00000354822	NM_001079668.2	222	gAg/gGg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246533	105246533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	159	697	1	ENST00000349310.3:c.67C>T	p.Arg23Trp	p.R23W	ENST00000349310	NM_001014432.1	23	Cgg/Tgg																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643392	38643392	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	45	612	0	ENST00000299084.4:c.867del	p.Lys289AsnfsTer14	p.K289Nfs*14	ENST00000299084	NM_152594.2	288	Aaa/aa																																																																															
BLM	641	MSKCC	GRCh37	15	91333913	91333913	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	131	523	1	ENST00000355112.3:c.2858T>C	p.Ile953Thr	p.I953T	ENST00000355112	NM_000057.2	953	aTt/aCt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99442809	99442809	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	163	663	0	ENST00000268035.6:c.1211delA	p.Asn404ThrfsTer6	p.N404Tfs*6	ENST00000268035	NM_000875.3	402	ctA/ct																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343595	343595	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	238	861	1	ENST00000262320.3:c.2079del	p.Thr694ProfsTer11	p.T694Pfs*11	ENST00000262320	NM_003502.3	693	ccC/cc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	181	680	3	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136333	2136333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	242	954	1	ENST00000219476.3:c.4802G>A	p.Gly1601Asp	p.G1601D	ENST00000219476	NM_000548.3	1601	gGt/gAt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2137913	2137913	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150558493		P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	231	876	0	ENST00000219476.3:c.5039G>A	p.Cys1680Tyr	p.C1680Y	ENST00000219476	NM_000548.3	1680	tGc/tAc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3644532	3644532	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	282	1009	0	ENST00000294008.3:c.2082G>C	p.Gln694His	p.Q694H	ENST00000294008	NM_032444.2	694	caG/caC																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3808876	3808876	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	139	550	0	ENST00000262367.5:c.3348T>A	p.Asp1116Glu	p.D1116E	ENST00000262367	NM_004380.2	1116	gaT/gaA																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	88	443	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274042	10274042	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1184494228		P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	234	848	0	ENST00000330684.3:c.227G>A	p.Arg76His	p.R76H	ENST00000330684	NM_001134407.1	76	cGc/cAc																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349160	11349160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	110	332	0	ENST00000332029.2:c.176G>A	p.Arg59His	p.R59H	ENST00000332029	NM_003745.1	59	cGt/cAt																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	73	517	0	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																															
CTCF	10664	MSKCC	GRCh37	16	67660536	67660536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	142	566	1	ENST00000264010.4:c.1436G>A	p.Arg479His	p.R479H	ENST00000264010	NM_006565.3	479	cGc/cAc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	144	614	1	ENST00000264010.4:c.2070delA	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829578	72829578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	142	578	1	ENST00000268489.5:c.7003C>A	p.Leu2335Met	p.L2335M	ENST00000268489	NM_006885.3	2335	Ctg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993776	72993776	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200056605		P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	191	540	0	ENST00000268489.5:c.269G>A	p.Ser90Asn	p.S90N	ENST00000268489	NM_006885.3	90	aGc/aAc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81927400	81927400	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	198	665	0	ENST00000359376.3:c.1072+1G>A		p.X358_splice	ENST00000359376	NM_002661.3	358																																																																																
ANKRD11	29123	MSKCC	GRCh37	16	89347474	89347474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	149	660	2	ENST00000301030.4:c.5476C>T	p.Pro1826Ser	p.P1826S	ENST00000301030	NM_001256183.1	1826	Cca/Tca																																																																															
FANCA	2175	MSKCC	GRCh37	16	89874775	89874775	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	116	535	0	ENST00000389301.3:c.523A>G	p.Ser175Gly	p.S175G	ENST00000389301	NM_000135.2	175	Agt/Ggt																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216536	7216536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	122	579	0	ENST00000380728.2:c.799G>A	p.Asp267Asn	p.D267N	ENST00000380728		267	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	273	1011	0	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979014	7979014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	153	637	1	ENST00000319144.4:c.1553C>T	p.Thr518Ile	p.T518I	ENST00000319144	NM_001139.2	518	aCc/aTc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016635	12016636	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	97	375	0	ENST00000353533.5:c.772_773del	p.Ile258CysfsTer9	p.I258Cfs*9	ENST00000353533	NM_003010.3	257	tcTAtt/tctt																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	131	792	7	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40376873	40376873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	151	627	0	ENST00000293328.3:c.299G>A	p.Arg100His	p.R100H	ENST00000293328	NM_012448.3	100	cGc/cAc																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804235	46804235	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	171	739	0	ENST00000290295.7:c.772C>A	p.Arg258Ser	p.R258S	ENST00000290295	NM_006361.5	258	Cgc/Agc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	201	768	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59926603	59926603	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	53	501	0	ENST00000259008.2:c.394del	p.Thr132ProfsTer25	p.T132Pfs*25	ENST00000259008	NM_032043.2	132	Acc/cc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78935279	78935279	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	206	807	0	ENST00000306801.3:c.3691A>G	p.Ser1231Gly	p.S1231G	ENST00000306801	NM_020761.2	1231	Agc/Ggc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231449	5231449	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	224	922	2	ENST00000357368.4:c.2027del	p.Pro676ArgfsTer134	p.P676Rfs*134	ENST00000357368	NM_002850.3	676	cCg/cg																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14629036	14629036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	175	579	1	ENST00000254322.2:c.126G>T	p.Glu42Asp	p.E42D	ENST00000254322	NM_006145.1	42	gaG/gaT																																																																															
CIC	23152	MSKCC	GRCh37	19	42794551	42794551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	236	993	0	ENST00000575354.2:c.1631C>T	p.Ala544Val	p.A544V	ENST00000575354	NM_015125.3	544	gCc/gTc																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	120	421	1	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
BBC3	27113	MSKCC	GRCh37	19	47725018	47725019	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	220	955	0	ENST00000449228.1:c.725dupG	p.Arg243GlnfsTer7	p.R243Qfs*7	ENST00000449228	NM_001127240.2	242	ggc/ggGc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912806	50912806	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	194	821	0	ENST00000440232.2:c.2041del	p.Leu681SerfsTer13	p.L681Sfs*13	ENST00000440232	NM_002691.3	679	gaC/ga																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46611684	46611684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	222	871	0	ENST00000263734.3:c.2498C>T	p.Ser833Phe	p.S833F	ENST00000263734	NM_001430.4	833	tCc/tTc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99136555	99136555	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	207	814	0	ENST00000074304.5:c.44del	p.Arg15LeufsTer32	p.R15Lfs*32	ENST00000074304	NM_001134224.1	15	cGt/ct																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046263	128046263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	160	594	0	ENST00000285398.2:c.1000C>T	p.Arg334Cys	p.R334C	ENST00000285398	NM_000122.1	334	Cgt/Tgt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561521	9561521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	125	582	0	ENST00000353224.5:c.261G>T	p.Glu87Asp	p.E87D	ENST00000353224	NM_177990.2	87	gaG/gaT																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022374	31022374	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	88	342	0	ENST00000375687.4:c.1859del	p.Arg620LeufsTer83	p.R620Lfs*83	ENST00000375687	NM_015338.5	620	cGt/ct																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40789999	40789999	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	51	530	0	ENST00000373198.4:c.2732A>G	p.Glu911Gly	p.E911G	ENST00000373198	NM_133170.3	911	gAa/gGa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46281743	46281743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	154	715	0	ENST00000371998.3:c.4190G>A	p.Gly1397Asp	p.G1397D	ENST00000371998		1397	gGc/gAc																																																																															
NF2	4771	MSKCC	GRCh37	22	30074295	30074295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	95	527	0	ENST00000338641.4:c.1557G>A	p.Met519Ile	p.M519I	ENST00000338641	NM_000268.3	519	atG/atA																																																																															
EP300	2033	MSKCC	GRCh37	22	41573318	41573318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	209	821	2	ENST00000263253.7:c.5603C>T	p.Thr1868Met	p.T1868M	ENST00000263253	NM_001429.3	1868	aCg/aTg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664989	138664989	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	90	375	0	ENST00000330315.3:c.576del	p.Lys193SerfsTer78	p.K193Sfs*78	ENST00000330315	NM_023067.3	192	ccC/cc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665170	138665170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	251	885	2	ENST00000330315.3:c.395C>T	p.Pro132Leu	p.P132L	ENST00000330315	NM_023067.3	132	cCg/cTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928078	178928080	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	79	568	0	ENST00000263967.3:c.1359_1361delAGA	p.Glu453del	p.E453del	ENST00000263967	NM_006218.2	452	ttAGAa/tta																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182681667	182681667	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	60	378	0	ENST00000292782.4:c.389+2T>C		p.X130_splice	ENST00000292782	NM_020640.2	130																																																																																
RICTOR	253260	MSKCC	GRCh37	5	38954898	38954898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	35	357	0	ENST00000357387.3:c.2675G>A	p.Gly892Asp	p.G892D	ENST00000357387	NM_152756.3	892	gGc/gAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177683	56177683	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	106	366	0	ENST00000399503.3:c.2656C>T	p.Gln886Ter	p.Q886*	ENST00000399503	NM_005921.1	886	Cag/Tag																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754554	57754554	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	55	396	0	ENST00000274289.3:c.493del	p.Arg165GlyfsTer7	p.R165Gfs*7	ENST00000274289	NM_006622.3	165	Agg/gg																																																																															
APC	324	MSKCC	GRCh37	5	112175392	112175392	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	48	303	0	ENST00000257430.4:c.4101G>T	p.Gln1367His	p.Q1367H	ENST00000257430	NM_000038.5	1367	caG/caT																																																																															
APC	324	MSKCC	GRCh37	5	112175525	112175525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	95	397	0	ENST00000257430.4:c.4234G>A	p.Gly1412Arg	p.G1412R	ENST00000257430	NM_000038.5	1412	Gga/Aga																																																																															
IRF4	3662	MSKCC	GRCh37	6	401582	401582	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	184	520	0	ENST00000380956.4:c.908del	p.Asn303ThrfsTer6	p.N303Tfs*6	ENST00000380956	NM_001195286.1	302	Aaa/aa																																																																															
E2F3	1871	MSKCC	GRCh37	6	20486919	20486919	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	55	368	0	ENST00000346618.3:c.885-1C>T		p.X295_splice	ENST00000346618	NM_001949.4	295																																																																																
HIST1H3B	8358	MSKCC	GRCh37	6	26032218	26032218	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	71	279	0	ENST00000244661.2:c.71A>T	p.Lys24Met	p.K24M	ENST00000244661	NM_003537.3	24	aAg/aTg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911045	29911045	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	225	999	0	ENST00000376809.5:c.344G>A	p.Gly115Asp	p.G115D	ENST00000376809	NM_002116.7	115	gGt/gAt																																																																															
CCND3	896	MSKCC	GRCh37	6	41903836	41903836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	149	539	0	ENST00000372991.4:c.721C>T	p.Arg241Trp	p.R241W	ENST00000372991	NM_001760.3	241	Cgg/Tgg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120889	94120889	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	61	401	0	ENST00000369303.4:c.163-1G>C		p.X55_splice	ENST00000369303	NM_004440.3	55																																																																																
SESN1	27244	MSKCC	GRCh37	6	109308826	109308826	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	56	318	0	ENST00000436639.2:c.1577T>C	p.Val526Ala	p.V526A	ENST00000436639	NM_014454.2	526	gTt/gCt																																																																															
SESN1	27244	MSKCC	GRCh37	6	109322606	109322606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	108	726	2	ENST00000436639.2:c.431C>T	p.Thr144Met	p.T144M	ENST00000436639	NM_014454.2	144	aCg/aTg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138195980	138195980	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	61	154	0	ENST00000237289.4:c.296-2A>G		p.X99_splice	ENST00000237289	NM_001270507.1	99																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157505503	157505503	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	89	405	0	ENST00000346085.5:c.3488del	p.Pro1163ArgfsTer48	p.P1163Rfs*48	ENST00000346085	NM_020732.3	1162	Ccc/cc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6035204	6035207	+	frameshift_variant	Frame_Shift_Del	DEL	CTGT	CTGT	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	53	557	1	ENST00000265849.7:c.861_864delACAG	p.Arg287SerfsTer19	p.R287Sfs*19	ENST00000265849	NM_000535.5	287	agACAG/ag																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946143	13946143	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	95	720	0	ENST00000405192.2:c.953del	p.Leu318TrpfsTer2	p.L318Wfs*2	ENST00000405192	NM_001163147.1	318	tTg/tg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739962	41739962	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	126	565	0	ENST00000242208.4:c.11T>C	p.Leu4Pro	p.L4P	ENST00000242208	NM_002192.2	4	cTt/cCt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38277182	38277182	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	200	732	0	ENST00000425967.3:c.1246T>G	p.Phe416Val	p.F416V	ENST00000425967	NM_001174067.1	416	Ttc/Gtc																																																																															
NBN	4683	MSKCC	GRCh37	8	90967527	90967527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	41	365	0	ENST00000265433.3:c.1381C>T	p.Pro461Ser	p.P461S	ENST00000265433	NM_002485.4	461	Ccg/Tcg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971104	21971104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	168	496	0	ENST00000304494.5:c.254C>T	p.Ala85Val	p.A85V	ENST00000304494	NM_000077.4	85	gCt/gTt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250127	110250127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	187	818	1	ENST00000374672.4:c.548C>T	p.Ala183Val	p.A183V	ENST00000374672	NM_004235.4	183	gCt/gTt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110251245	110251245	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	210	729	2	ENST00000374672.4:c.92A>T	p.Glu31Val	p.E31V	ENST00000374672	NM_004235.4	31	gAg/gTg																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127912079	127912079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	25	422	0	ENST00000373547.4:c.791G>A	p.Arg264His	p.R264H	ENST00000373547	NM_002721.4	264	cGt/cAt																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127915960	127915960	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	115	522	0	ENST00000373547.4:c.521A>T	p.Asp174Val	p.D174V	ENST00000373547	NM_002721.4	174	gAt/gTt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772614	135772615	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	135	561	0	ENST00000298552.3:c.2931dup	p.Leu978ThrfsTer2	p.L978Tfs*2	ENST00000298552	NM_001162426.1	977	-/A																																																																															
TSC1	7248	MSKCC	GRCh37	9	135782722	135782722	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	71	571	0	ENST00000298552.3:c.1299del	p.His433GlnfsTer7	p.H433Qfs*7	ENST00000298552	NM_001162426.1	433	caC/ca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391338	139391338	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61751489		P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	255	1055	0	ENST00000277541.6:c.6853G>A	p.Val2285Ile	p.V2285I	ENST00000277541	NM_017617.3	2285	Gtc/Atc																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20153947	20153947	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	61	571	1	ENST00000379607.5:c.113T>C	p.Val38Ala	p.V38A	ENST00000379607	NM_001412.3	38	gTa/gCa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921553	39921553	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	214	848	0	ENST00000378444.4:c.4267C>T	p.Gln1423Ter	p.Q1423*	ENST00000378444	NM_001123385.1	1423	Cag/Tag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932474	39932474	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	228	860	0	ENST00000378444.4:c.2125G>T	p.Gly709Cys	p.G709C	ENST00000378444	NM_001123385.1	709	Ggc/Tgc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426301	47426301	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	191	827	0	ENST00000377045.4:c.718A>C	p.Ser240Arg	p.S240R	ENST00000377045	NM_001654.4	240	Agc/Cgc																																																																															
AR	367	MSKCC	GRCh37	X	66943553	66943554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	103	491	0	ENST00000374690.3:c.2637dup	p.Asp880Ter	p.D880*	ENST00000374690	NM_000044.3	878	act/acTt																																																																															
ATRX	546	MSKCC	GRCh37	X	76938089	76938090	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	82	598	1	ENST00000373344.5:c.2658_2659del	p.Glu886AspfsTer10	p.E886Dfs*10	ENST00000373344	NM_000489.3	886	gaGAct/gact																																																																															
STAG2	10735	MSKCC	GRCh37	X	123224762	123224763	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	112	642	0	ENST00000218089.9:c.3531_3532del	p.Arg1177SerfsTer7	p.R1177Sfs*7	ENST00000218089	NM_001042749.1	1176	GAg/g																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950775	38950775	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	32	283	0	ENST00000357387.3:c.3175A>T	p.Thr1059Ser	p.T1059S	ENST00000357387	NM_152756.3	1059	Aca/Tca																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188298	32188298	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	232	848	0	ENST00000375023.3:c.1043G>T	p.Gly348Val	p.G348V	ENST00000375023	NM_004557.3	348	gGc/gTc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	213	704	7	ENST00000407977.2:c.349delC	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	34	558	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0029649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	62	850	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713750	30713750	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	30	474	0	ENST00000359013.4:c.1150G>C	p.Ala384Pro	p.A384P	ENST00000359013	NM_001024847.2	384	Gct/Cct																																																																															
AXL	558	MSKCC	GRCh37	19	41727136	41727136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	46	697	0	ENST00000301178.4:c.394T>C	p.Tyr132His	p.Y132H	ENST00000301178	NM_021913.4	132	Tat/Cat																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921598	39921598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	47	343	0	ENST00000378444.4:c.4222G>A	p.Asp1408Asn	p.D1408N	ENST00000378444	NM_001123385.1	1408	Gat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	60	465	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0029654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1202	112	737	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971035	21971035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	61	384	0	ENST00000304494.5:c.323A>G	p.Asp108Gly	p.D108G	ENST00000304494	NM_000077.4	108	gAt/gGt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189861	66189861	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	63	413	1	ENST00000273854.3:c.3085C>T	p.Gln1029Ter	p.Q1029*	ENST00000273854	NM_004439.5	1029	Cag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81336606	81336606	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	52	400	0	ENST00000222390.5:c.1616G>A	p.Arg539Gln	p.R539Q	ENST00000222390	NM_000601.4	539	cGa/cAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023008	27023010	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0029659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	10	59	0	ENST00000324856.7:c.126_128delGGC	p.Ala45del	p.A45del	ENST00000324856	NM_006015.4	38	gaGGCg/gag																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180568	94180568	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	695	783	0	ENST00000323929.3:c.1600G>T	p.Glu534Ter	p.E534*	ENST00000323929	NM_005591.3	534	Gag/Tag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118348821	118348821	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0029663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	556	556	0	ENST00000534358.1:c.3474T>A	p.Cys1158Ter	p.C1158*	ENST00000534358	NM_005933.3	1158	tgT/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398283	25398284	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0029663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	278	806	2	ENST00000256078.4:c.35_36delinsAA	p.Gly12Glu	p.G12E	ENST00000256078	NM_033360.2	12	gGT/gAA																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45396851	45396851	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	304	665	0	ENST00000262160.6:c.321A>T	p.Gln107His	p.Q107H	ENST00000262160	NM_005901.5	107	caA/caT																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267359	198267359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1216	418	853	2	ENST00000335508.6:c.1998G>T	p.Lys666Asn	p.K666N	ENST00000335508	NM_012433.2	666	aaG/aaT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046728	180046728	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1510	572	1483	0	ENST00000261937.6:c.2584G>T	p.Ala862Ser	p.A862S	ENST00000261937	NM_182925.4	862	Gcc/Tcc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120318	94120318	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	173	395	0	ENST00000369303.4:c.733G>C	p.Ala245Pro	p.A245P	ENST00000369303	NM_004440.3	245	Gcc/Ccc																																																																															
BTK	695	MSKCC	GRCh37	X	100626618	100626618	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	A			P-0029663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	319	753	0	ENST00000308731.7:c.309+3G>T		p.X103_splice	ENST00000308731	NM_000061.2	103																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49448146	49448146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	131	527	0	ENST00000301067.7:c.454C>A	p.Gln152Lys	p.Q152K	ENST00000301067	NM_003482.3	152	Cag/Aag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912243	32912243	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	24	495	0	ENST00000380152.3:c.3751A>G	p.Thr1251Ala	p.T1251A	ENST00000380152		1251	Act/Gct																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25976449	25976450	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	49	469	0	ENST00000435504.4:c.1095dup	p.Val366SerfsTer10	p.V366Sfs*10	ENST00000435504		365	-/A																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25991729	25991730	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	17	268	0	ENST00000435504.4:c.512dup	p.Gln172AlafsTer33	p.Q172Afs*33	ENST00000435504		171	aag/aaAg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564512	86564512	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	137	395	0	ENST00000274376.6:c.244G>C	p.Gly82Arg	p.G82R	ENST00000274376	NM_002890.2	82	Ggg/Cgg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129249	152129249	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771540162		P-0029664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	152	578	5	ENST00000206249.3:c.202G>A	p.Ala68Thr	p.A68T	ENST00000206249	NM_000125.3	68	Gcc/Acc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874412	151874416	+	frameshift_variant	Frame_Shift_Del	DEL	ACTTC	ACTTC	-			P-0029664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	34	327	0	ENST00000262189.6:c.8122_8126del	p.Glu2708GlnfsTer5	p.E2708Qfs*5	ENST00000262189	NM_170606.2	2708	GAAGTc/c																																																																															
FLT3	2322	MSKCC	GRCh37	13	28602329	28602329	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	68	503	0	ENST00000241453.7:c.2039C>A	p.Ala680Glu	p.A680E	ENST00000241453	NM_004119.2	680	gCg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	125	483	2	ENST00000269305.4:c.542G>C	p.Arg181Pro	p.R181P	ENST00000269305	NM_001126112.2	181	cGc/cCc																																																																															
RET	5979	MSKCC	GRCh37	10	43596053	43596053	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	106	570	1	ENST00000355710.3:c.220G>T	p.Gly74Cys	p.G74C	ENST00000355710	NM_020975.4	74	Ggc/Tgc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18524158	18524158	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	29	441	0	ENST00000266497.5:c.1670T>G	p.Met557Arg	p.M557R	ENST00000266497		557	aTg/aGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448140	49448140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	84	563	0	ENST00000301067.7:c.460G>T	p.Gly154Cys	p.G154C	ENST00000301067	NM_003482.3	154	Ggc/Tgc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155211	55155211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	115	482	0	ENST00000257290.5:c.2810C>A	p.Pro937Gln	p.P937Q	ENST00000257290	NM_006206.4	937	cCg/cAg																																																																															
TET2	54790	MSKCC	GRCh37	4	106156606	106156606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	83	376	0	ENST00000380013.4:c.1507G>A	p.Glu503Lys	p.E503K	ENST00000380013	NM_001127208.2	503	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0029688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	234	477	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59770829	59770829	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	248	485	0	ENST00000259008.2:c.2537A>G	p.Asp846Gly	p.D846G	ENST00000259008	NM_032043.2	846	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	441	698	0	ENST00000269305.4:c.537T>A	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caA																																																																															
FLT3	2322	MSKCC	GRCh37	13	28623658	28623658	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	228	529	0	ENST00000241453.7:c.899T>A	p.Met300Lys	p.M300K	ENST00000241453	NM_004119.2	300	aTg/aAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399435	139399435	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	1283	988	0	ENST00000277541.6:c.4708G>C	p.Ala1570Pro	p.A1570P	ENST00000277541	NM_017617.3	1570	Gcg/Ccg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	43	650	1	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	497	771	1	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241726	55241726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	163	579	0	ENST00000275493.2:c.2174C>T	p.Thr725Met	p.T725M	ENST00000275493	NM_005228.3	725	aCg/aTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730802	40730802	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	243	770	0	ENST00000373198.4:c.3733G>T	p.Gly1245Ter	p.G1245*	ENST00000373198	NM_133170.3	1245	Gga/Tga																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202552	67202552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	433	904	0	ENST00000312629.5:c.1361C>T	p.Pro454Leu	p.P454L	ENST00000312629	NM_003952.2	454	cCg/cTg																																																																															
IRF4	3662	MSKCC	GRCh37	6	398863	398863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1265	792	588	0	ENST00000380956.4:c.673C>A	p.Pro225Thr	p.P225T	ENST00000380956	NM_001195286.1	225	Cca/Aca																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031947	26031947	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	168	383	0	ENST00000244661.2:c.342T>A	p.His114Gln	p.H114Q	ENST00000244661	NM_003537.3	114	caT/caA																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557699	21557699	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	447	733	0	ENST00000382592.4:c.2146G>T	p.Glu716Ter	p.E716*	ENST00000382592	NM_014572.2	716	Gag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106939	27106939	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	278	485	1	ENST00000324856.7:c.6550G>T	p.Ala2184Ser	p.A2184S	ENST00000324856	NM_006015.4	2184	Gcc/Tcc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468310	120468310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	844	624	0	ENST00000256646.2:c.4129G>T	p.Gly1377Cys	p.G1377C	ENST00000256646	NM_024408.3	1377	Ggc/Tgc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163317684	163317684	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	32	545	0	ENST00000271452.3:c.1080T>A	p.Asn360Lys	p.N360K	ENST00000271452	NM_145697.2	360	aaT/aaA																																																																															
PARP1	142	MSKCC	GRCh37	1	226555271	226555271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	55	571	1	ENST00000366794.5:c.2316G>T	p.Glu772Asp	p.E772D	ENST00000366794	NM_001618.3	772	gaG/gaT																																																																															
SUFU	51684	MSKCC	GRCh37	10	104309769	104309769	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	317	759	0	ENST00000369902.3:c.360del	p.Thr121ProfsTer4	p.T121Pfs*4	ENST00000369902	NM_016169.3	120	ttG/tt																																																																															
PGR	5241	MSKCC	GRCh37	11	100999633	100999633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	188	1168	0	ENST00000325455.5:c.169G>T	p.Gly57Trp	p.G57W	ENST00000325455	NM_001202474.3	57	Ggg/Tgg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245244	46245244	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	422	481	0	ENST00000334344.6:c.3338G>T	p.Gly1113Val	p.G1113V	ENST00000334344	NM_152641.2	1113	gGg/gTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287501	46287501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	477	488	1	ENST00000334344.6:c.5360G>T	p.Arg1787Leu	p.R1787L	ENST00000334344	NM_152641.2	1787	cGc/cTc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562918	21562918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	528	795	1	ENST00000382592.4:c.1001G>T	p.Arg334Leu	p.R334L	ENST00000382592	NM_014572.2	334	cGc/cTc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28588670	28588670	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	314	540	0	ENST00000241453.7:c.2778G>C	p.Trp926Cys	p.W926C	ENST00000241453	NM_004119.2	926	tgG/tgC																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435867	110435867	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	455	664	0	ENST00000375856.3:c.2534C>A	p.Pro845Gln	p.P845Q	ENST00000375856	NM_003749.2	845	cCa/cAa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30047509	30047509	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	239	550	0	ENST00000331968.5:c.2492A>T	p.Asp831Val	p.D831V	ENST00000331968	NM_002742.2	831	gAt/gTt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30132970	30132970	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	183	665	0	ENST00000331968.5:c.631G>T	p.Gly211Trp	p.G211W	ENST00000331968	NM_002742.2	211	Ggg/Tgg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988424	36988424	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	117	462	0	ENST00000354822.5:c.229G>T	p.Ala77Ser	p.A77S	ENST00000354822	NM_001079668.2	77	Gca/Tca																																																																															
MGA	23269	MSKCC	GRCh37	15	42003384	42003384	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	243	519	0	ENST00000219905.7:c.2921A>T	p.Gln974Leu	p.Q974L	ENST00000219905	NM_001164273.1	974	cAg/cTg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712790	43712790	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	282	812	0	ENST00000382044.4:c.4394G>T	p.Ser1465Ile	p.S1465I	ENST00000382044	NM_001141980.1	1465	aGt/aTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221961	1221961	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	398	904	0	ENST00000326873.7:c.876C>G	p.Tyr292Ter	p.Y292*	ENST00000326873	NM_000455.4	292	taC/taG																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25466766	25466766	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	221	566	0	ENST00000264709.3:c.1936+1G>A		p.X646_splice	ENST00000264709	NM_175629.2	646																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212248702	212248702	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	157	430	2	ENST00000342788.4:c.3565C>A	p.His1189Asn	p.H1189N	ENST00000342788	NM_005235.2	1189	Cac/Aac																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663452	227663452	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	142	225	0	ENST00000305123.5:c.3G>A	p.Met1?	p.M1?	ENST00000305123	NM_005544.2	1	atG/atA																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31368135	31368135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	247	766	2	ENST00000328111.2:c.6G>T	p.Lys2Asn	p.K2N	ENST00000328111	NM_006892.3	2	aaG/aaT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827935	40827935	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	191	509	0	ENST00000373198.4:c.2493C>G	p.Ser831Arg	p.S831R	ENST00000373198	NM_133170.3	831	agC/agG																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62292742	62292742	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	248	635	1	ENST00000508582.2:c.194A>G	p.Asp65Gly	p.D65G	ENST00000508582		65	gAc/gGc																																																																															
NF2	4771	MSKCC	GRCh37	22	30035172	30035172	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	221	591	1	ENST00000338641.4:c.334G>T	p.Glu112Ter	p.E112*	ENST00000338641	NM_000268.3	112	Gag/Tag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670601	134670601	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	336	810	0	ENST00000398015.3:c.512A>T	p.Asn171Ile	p.N171I	ENST00000398015	NM_004441.4	171	aAt/aTt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270185	66270185	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	70	329	0	ENST00000273854.3:c.1697C>G	p.Ser566Cys	p.S566C	ENST00000273854	NM_004439.5	566	tCc/tGc																																																																															
IRF4	3662	MSKCC	GRCh37	6	398836	398836	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	1339	503	1	ENST00000380956.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000380956	NM_001195286.1	216	Gtg/Ttg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023085	150023085	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	250	710	0	ENST00000253339.5:c.178G>T	p.Glu60Ter	p.E60*	ENST00000253339		60	Gaa/Taa																																																																															
HGF	3082	MSKCC	GRCh37	7	81334988	81334988	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	348	532	0	ENST00000222390.5:c.1839T>G	p.Ser613Arg	p.S613R	ENST00000222390	NM_000601.4	613	agT/agG																																																																															
SMO	6608	MSKCC	GRCh37	7	128845140	128845140	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	522	965	2	ENST00000249373.3:c.634G>T	p.Gly212Cys	p.G212C	ENST00000249373	NM_005631.4	212	Ggc/Tgc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69030838	69030838	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	329	416	1	ENST00000288368.4:c.3380G>T	p.Ser1127Ile	p.S1127I	ENST00000288368	NM_024870.2	1127	aGc/aTc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5089819	5089819	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	12	382	0	ENST00000381652.3:c.2717A>T	p.Gln906Leu	p.Q906L	ENST00000381652	NM_004972.3	906	cAg/cTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460565	8460565	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	105	451	0	ENST00000356435.5:c.3721T>A	p.Tyr1241Asn	p.Y1241N	ENST00000356435		1241	Tat/Aat																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250476	110250476	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	153	560	0	ENST00000374672.4:c.199del	p.Ala67ArgfsTer47	p.A67Rfs*47	ENST00000374672	NM_004235.4	67	Gcg/cg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402487	139402487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	238	921	0	ENST00000277541.6:c.3430G>T	p.Asp1144Tyr	p.D1144Y	ENST00000277541	NM_017617.3	1144	Gac/Tac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932954	39932954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	258	286	0	ENST00000378444.4:c.1645G>T	p.Gly549Cys	p.G549C	ENST00000378444	NM_001123385.1	549	Ggc/Tgc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69032497	69032499	+	frameshift_variant	Frame_Shift_Ins	INS	CTC	CTC	TTCA			P-0029713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	478	826	0	ENST00000288368.4:c.3571_3573delinsTTCA	p.Leu1191PhefsTer51	p.L1191Ffs*51	ENST00000288368	NM_024870.2	1191	CTC/TTCA																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0029721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	42	434	0				ENST00000310581	NM_198253.2																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0029721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	16	591	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0029721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	27	364	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662539	227662539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	41	402	0	ENST00000305123.5:c.916G>A	p.Glu306Lys	p.E306K	ENST00000305123	NM_005544.2	306	Gag/Aag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861143	57861143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	44	533	0	ENST00000228682.2:c.940C>T	p.Arg314Cys	p.R314C	ENST00000228682	NM_005269.2	314	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057961	27057961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	57	575	1	ENST00000324856.7:c.1669C>T	p.Gln557Ter	p.Q557*	ENST00000324856	NM_006015.4	557	Cag/Tag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026871	71026871	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	21	273	0	ENST00000318789.4:c.1351G>A	p.Asp451Asn	p.D451N	ENST00000318789	NM_032682.5	451	Gat/Aat																																																																															
MPL	4352	MSKCC	GRCh37	1	43818358	43818358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	72	614	0	ENST00000372470.3:c.1823C>T	p.Pro608Leu	p.P608L	ENST00000372470	NM_005373.2	608	cCa/cTa																																																																															
JUN	3725	MSKCC	GRCh37	1	59247934	59247934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	111	718	3	ENST00000371222.2:c.809G>T	p.Arg270Leu	p.R270L	ENST00000371222	NM_002228.3	270	cGa/cTa																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206669470	206669470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	36	571	0	ENST00000367120.3:c.2143G>A	p.Asp715Asn	p.D715N	ENST00000367120	NM_014002.3	715	Gat/Aat																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724694	112724694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	30	540	1	ENST00000369452.4:c.578C>T	p.Ser193Phe	p.S193F	ENST00000369452	NM_007373.3	193	tCt/tTt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41199678	41199678	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	45	723	0	ENST00000357654.3:c.5449G>C	p.Glu1817Gln	p.E1817Q	ENST00000357654	NM_007294.3	1817	Gag/Cag																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39595486	39595486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	19	402	0	ENST00000262039.4:c.1372C>T	p.Pro458Ser	p.P458S	ENST00000262039	NM_002647.2	458	Cct/Tct																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264782	46264782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	25	494	0	ENST00000371998.3:c.1652C>T	p.Ser551Phe	p.S551F	ENST00000371998		551	tCt/tTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098795	47098795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	58	723	0	ENST00000409792.3:c.6479C>T	p.Pro2160Leu	p.P2160L	ENST00000409792	NM_014159.6	2160	cCg/cTg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1961452	1961452	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	42	495	0	ENST00000382891.5:c.3240G>C	p.Lys1080Asn	p.K1080N	ENST00000382891	NM_133335.3	1080	aaG/aaC																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177397	56177410	+	frameshift_variant	Frame_Shift_Del	DEL	GTATAAGAAGCTGC	GTATAAGAAGCTGC	CTA			P-0029721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	19	251	0	ENST00000399503.3:c.2370_2383delinsCTA	p.Arg790SerfsTer13	p.R790Sfs*13	ENST00000399503	NM_005921.1	790	agGTATAAGAAGCTGCtg/agCTAtg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878902	151878902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	33	514	0	ENST00000262189.6:c.6043G>A	p.Asp2015Asn	p.D2015N	ENST00000262189	NM_170606.2	2015	Gat/Aat																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0029724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	293	399	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0029724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	391	950	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0029724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	138	538	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	362	785	1	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0029724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	506	549	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158617517	158617517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	246	611	0	ENST00000263640.3:c.1139G>A	p.Arg380His	p.R380H	ENST00000263640	NM_001105.4	380	cGc/cAc																																																																															
RAD52	5893	MSKCC	GRCh37	12	1036329	1036329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	94	762	0	ENST00000358495.3:c.449G>A	p.Gly150Glu	p.G150E	ENST00000358495	NM_134424.2	150	gGg/gAg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169878	32169878	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	518	924	1	ENST00000375023.3:c.3730G>T	p.Asp1244Tyr	p.D1244Y	ENST00000375023	NM_004557.3	1244	Gac/Tac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0029726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	276	291	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	276	665	0	ENST00000269305.4:c.800G>C	p.Arg267Pro	p.R267P	ENST00000269305	NM_001126112.2	267	cGg/cCg																																																																															
NF1	4763	MSKCC	GRCh37	17	29560085	29560085	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	170	343	1	ENST00000358273.4:c.3562C>T	p.Gln1188Ter	p.Q1188*	ENST00000358273	NM_001042492.2	1188	Caa/Taa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16005060	16005060	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0029726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	122	482	0	ENST00000268712.3:c.2194A>T	p.Lys732Ter	p.K732*	ENST00000268712	NM_006311.3	732	Aag/Tag																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72890321	72890321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	209	496	2	ENST00000325599.8:c.361G>A	p.Asp121Asn	p.D121N	ENST00000325599	NM_018130.2	121	Gac/Aac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410535	139410535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	140	591	0	ENST00000277541.6:c.1567C>T	p.His523Tyr	p.H523Y	ENST00000277541	NM_017617.3	523	Cat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	117	660	0	ENST00000269305.4:c.731G>T	p.Gly244Val	p.G244V	ENST00000269305	NM_001126112.2	244	gGc/gTc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417865	138417865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	118	577	0	ENST00000289153.2:c.1654G>A	p.Glu552Lys	p.E552K	ENST00000289153	NM_006219.2	552	Gaa/Aaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692930	89692930	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	149	653	0	ENST00000371953.3:c.416del	p.Leu139TyrfsTer8	p.L139Yfs*8	ENST00000371953	NM_000314.4	138	taT/ta																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224169	36224169	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	67	624	0	ENST00000222270.7:c.6719T>A	p.Leu2240His	p.L2240H	ENST00000222270	NM_014727.1	2240	cTc/cAc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430921	181430921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	89	812	0	ENST00000325404.1:c.773C>A	p.Ser258Tyr	p.S258Y	ENST00000325404	NM_003106.3	258	tCc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0029734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	163	956	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67670670	67670670	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	107	794	0	ENST00000264010.4:c.1915C>A	p.Gln639Lys	p.Q639K	ENST00000264010	NM_006565.3	639	Cag/Aag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117750	115117750	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	67	589	0	ENST00000257566.3:c.685A>T	p.Thr229Ser	p.T229S	ENST00000257566	NM_016569.3	229	Acg/Tcg																																																																															
APC	324	MSKCC	GRCh37	5	112136985	112136985	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	42	515	0	ENST00000257430.4:c.739C>T	p.Gln247Ter	p.Q247*	ENST00000257430	NM_000038.5	247	Cag/Tag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0029737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	395	573	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	259	372	0	ENST00000346208.3:c.1275dupA	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829598	72829598	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	166	575	0	ENST00000268489.5:c.6983A>G	p.Tyr2328Cys	p.Y2328C	ENST00000268489	NM_006885.3	2328	tAc/tGc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953126	81953126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	179	276	0	ENST00000359376.3:c.2092G>A	p.Asp698Asn	p.D698N	ENST00000359376	NM_002661.3	698	Gac/Aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0029738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	124	671	1	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11303184	11303184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	50	620	0	ENST00000361445.4:c.1399G>A	p.Asp467Asn	p.D467N	ENST00000361445	NM_004958.3	467	Gac/Aac																																																																															
MGA	23269	MSKCC	GRCh37	15	42034888	42034888	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	62	566	0	ENST00000219905.7:c.4730T>C	p.Val1577Ala	p.V1577A	ENST00000219905	NM_001164273.1	1577	gTc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579395	7579398	+	frameshift_variant	Frame_Shift_Del	DEL	GGAC	GGAC	-			P-0029738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	153	902	2	ENST00000269305.4:c.289_292del	p.Val97LeufsTer25	p.V97Lfs*25	ENST00000269305	NM_001126112.2	97	GTCCct/ct																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149290747	149290747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	63	625	0	ENST00000360632.3:c.472G>T	p.Ala158Ser	p.A158S	ENST00000360632	NM_015472.4	158	Gcg/Tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	141	585	0	ENST00000269305.4:c.711G>C	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atC																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118870	70118870	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	55	371	0	ENST00000245479.2:c.442G>C	p.Glu148Gln	p.E148Q	ENST00000245479	NM_000346.3	148	Gag/Cag																																																																															
TET2	54790	MSKCC	GRCh37	4	106156439	106156439	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	50	352	0	ENST00000380013.4:c.1340G>C	p.Arg447Thr	p.R447T	ENST00000380013	NM_001127208.2	447	aGg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0029750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	9	489	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760929	59760929	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	61	388	0	ENST00000259008.2:c.3478A>G	p.Asn1160Asp	p.N1160D	ENST00000259008	NM_032043.2	1160	Aac/Gac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0029758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	72	286	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011150	12011150	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	72	241	0	ENST00000353533.5:c.557A>G	p.Asp186Gly	p.D186G	ENST00000353533	NM_003010.3	186	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0029761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	96	464	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0029762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	399	530	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133305	38133305	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	290	587	0	ENST00000317025.8:c.4168G>C	p.Glu1390Gln	p.E1390Q	ENST00000317025	NM_023034.1	1390	Gaa/Caa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	94	473	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0029767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	146	560	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0029767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	90	318	1	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40727143	40727143	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	62	554	1	ENST00000373198.4:c.3821A>T	p.Asn1274Ile	p.N1274I	ENST00000373198	NM_133170.3	1274	aAc/aTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0029771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	32	550	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	303	544	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115916	8115917	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	183	383	0	ENST00000346208.3:c.1263dup	p.Met422AspfsTer85	p.M422Dfs*85	ENST00000346208		421	ccg/ccGg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518155	187518155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	61	359	0	ENST00000441802.2:c.12539C>T	p.Ala4180Val	p.A4180V	ENST00000441802	NM_005245.3	4180	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0029775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	235	489	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
TET1	80312	MSKCC	GRCh37	10	70441169	70441169	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	63	329	0	ENST00000373644.4:c.4838A>G	p.Glu1613Gly	p.E1613G	ENST00000373644	NM_030625.2	1613	gAa/gGa																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871772	35871772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	38	403	0	ENST00000216797.5:c.734G>A	p.Arg245Lys	p.R245K	ENST00000216797	NM_020529.2	245	aGa/aAa																																																																															
TP63	8626	MSKCC	GRCh37	3	189526299	189526304	+	inframe_deletion	In_Frame_Del	DEL	AGTCGG	AGTCGG	-			P-0029775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	327	332	0	ENST00000264731.3:c.563_568del	p.Lys188_Ala190delinsThr	p.K188_A190delinsT	ENST00000264731	NM_003722.4	188	aAGTCGGcc/acc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681880	30681880	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0029775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	84	359	0	ENST00000376406.3:c.217A>T	p.Lys73Ter	p.K73*	ENST00000376406	NM_014641.2	73	Aaa/Taa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974705	21974706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0029775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	104	309	0	ENST00000304494.5:c.121_122insTT	p.Pro41LeufsTer13	p.P41Lfs*13	ENST00000304494	NM_000077.4	41	ccg/cTTcg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111496	8111512	+	frameshift_variant	Frame_Shift_Del	DEL	TGGAGGAGGAATGCCAA	TGGAGGAGGAATGCCAA	-			P-0029777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	123	464	0	ENST00000346208.3:c.985_1001del	p.Arg329GlyfsTer17	p.R329Gfs*17	ENST00000346208		328	TGGAGGAGGAATGCCAAt/t																																																																															
AKT1	207	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	45	465	0	ENST00000349310.3:c.155T>G	p.Leu52Arg	p.L52R	ENST00000349310	NM_001014432.1	52	cTc/cGc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969369	44969369	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	67	179	0	ENST00000377967.4:c.4051C>T	p.Arg1351Ter	p.R1351*	ENST00000377967	NM_021140.2	1351	Cga/Tga																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39325170	39325170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	350	401	0	ENST00000373001.3:c.149G>A	p.Gly50Asp	p.G50D	ENST00000373001	NM_022157.3	50	gGt/gAt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577441	64577441	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	847	467	1	ENST00000337652.1:c.141del	p.Leu48TrpfsTer71	p.L48Wfs*71	ENST00000337652	NM_130803.2	47	ttT/tt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434527	110434527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1408	313	342	0	ENST00000375856.3:c.3874G>A	p.Gly1292Ser	p.G1292S	ENST00000375856	NM_003749.2	1292	Ggt/Agt																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80646131	80646131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	50	48	0	ENST00000286548.4:c.21G>T	p.Met7Ile	p.M7I	ENST00000286548	NM_002072.3	7	atG/atT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0029786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	194	283	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7573988	7573988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	575	622	0	ENST00000269305.4:c.1039G>A	p.Ala347Thr	p.A347T	ENST00000269305	NM_001126112.2	347	Gcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	70	469	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	136	380	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MGA	23269	MSKCC	GRCh37	15	41991076	41991076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	83	327	0	ENST00000219905.7:c.2029C>T	p.His677Tyr	p.H677Y	ENST00000219905	NM_001164273.1	677	Cat/Tat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992138	72992138	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764598603		P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	85	455	0	ENST00000268489.5:c.1907C>T	p.Ser636Leu	p.S636L	ENST00000268489	NM_006885.3	636	tCg/tTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044713	47044713	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	145	359	0	ENST00000329236.7:c.1879G>T	p.Glu627Ter	p.E627*	ENST00000329236	NM_001204466.1	627	Gag/Tag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864852	57864852	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	98	533	0	ENST00000228682.2:c.2329C>G	p.Gln777Glu	p.Q777E	ENST00000228682	NM_005269.2	777	Caa/Gaa																																																																															
RB1	5925	MSKCC	GRCh37	13	48941652	48941652	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	31	204	0	ENST00000267163.4:c.962A>G	p.Tyr321Cys	p.Y321C	ENST00000267163	NM_000321.2	321	tAc/tGc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30194799	30194799	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	130	529	0	ENST00000331968.5:c.346C>G	p.Leu116Val	p.L116V	ENST00000331968	NM_002742.2	116	Ctg/Gtg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5273574	5273574	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	89	357	0	ENST00000357368.4:c.258T>G	p.Ser86Arg	p.S86R	ENST00000357368	NM_002850.3	86	agT/agG																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291932	15291932	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	148	673	0	ENST00000263388.2:c.2834C>G	p.Ser945Trp	p.S945W	ENST00000263388	NM_000435.2	945	tCg/tGg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469594	25469594	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	112	558	1	ENST00000264709.3:c.1174G>T	p.Glu392Ter	p.E392*	ENST00000264709	NM_175629.2	392	Gag/Tag																																																																															
ALK	238	MSKCC	GRCh37	2	29606597	29606597	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	82	297	0	ENST00000389048.3:c.1282+1G>T		p.X428_splice	ENST00000389048	NM_004304.4	428																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40714479	40714479	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	88	374	0	ENST00000373198.4:c.3918C>A	p.Tyr1306Ter	p.Y1306*	ENST00000373198	NM_133170.3	1306	taC/taA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411009	63411010	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	77	253	0	ENST00000330258.3:c.2157_2158delinsAA	p.Met719_Gln720delinsIleLys	p.M719_Q720delinsIK	ENST00000330258	NM_152424.3	719	atGCag/atAAag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137271	64137271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	152	670	0	ENST00000334205.4:c.1703C>T	p.Thr568Met	p.T568M	ENST00000334205	NM_003942.2	568	aCg/aTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448295	56448295	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	147	577	0	ENST00000407977.2:c.352C>A	p.Pro118Thr	p.P118T	ENST00000407977		118	Ccc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	37	314	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0029816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	43	484	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857275	9857275	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1426934537		P-0029816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	33	409	0	ENST00000330684.3:c.4126C>T	p.Arg1376Cys	p.R1376C	ENST00000330684	NM_001134407.1	1376	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	68	421	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575152	48575152	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	34	293	0	ENST00000342988.3:c.346C>T	p.Gln116Ter	p.Q116*	ENST00000342988	NM_005359.5	116	Cag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332628	153332628	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	49	391	0	ENST00000281708.4:c.328G>T	p.Glu110Ter	p.E110*	ENST00000281708	NM_033632.3	110	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425073	49425073	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	79	716	0	ENST00000301067.7:c.13415T>C	p.Val4472Ala	p.V4472A	ENST00000301067	NM_003482.3	4472	gTg/gCg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913983	32913984	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	55	468	0	ENST00000380152.3:c.5492dup	p.Ser1832IlefsTer2	p.S1832Ifs*2	ENST00000380152		1831	ata/aTta																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033405	48033405	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	60	448	0	ENST00000234420.5:c.3709G>C	p.Glu1237Gln	p.E1237Q	ENST00000234420	NM_000179.2	1237	Gag/Cag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68999981	68999981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	52	516	0	ENST00000288368.4:c.2050G>A	p.Ala684Thr	p.A684T	ENST00000288368	NM_024870.2	684	Gct/Act																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249350	110249406	+	inframe_deletion	In_Frame_Del	DEL	GTGTAGGTTTTGCCGCAGCCCGCGTAATCACAAGTGTGGGTGGCGGTCCTTTTCCGG	GTGTAGGTTTTGCCGCAGCCCGCGTAATCACAAGTGTGGGTGGCGGTCCTTTTCCGG	-			P-0029819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	105	912	0	ENST00000374672.4:c.1167_1223del	p.Arg390_Thr408del	p.R390_T408del	ENST00000374672	NM_004235.4	389	ccCCGGAAAAGGACCGCCACCCACACTTGTGATTACGCGGGCTGCGGCAAAACCTACACa/cca																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44913079	44913082	+	frameshift_variant	Frame_Shift_Del	DEL	ATGC	ATGC	-			P-0029819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	68	184	0	ENST00000377967.4:c.756_759del	p.Met252IlefsTer4	p.M252Ifs*4	ENST00000377967	NM_021140.2	252	ATGCat/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0029820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	164	595	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0029820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	170	591	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	98	407	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	168	274	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0029820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	124	372	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045136	47045136	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	173	295	0	ENST00000329236.7:c.2143C>T	p.Arg715Ter	p.R715*	ENST00000329236	NM_001204466.1	715	Cga/Tga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464368	120464368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	183	500	1	ENST00000256646.2:c.5278G>A	p.Asp1760Asn	p.D1760N	ENST00000256646	NM_024408.3	1760	Gat/Aat																																																																															
MGA	23269	MSKCC	GRCh37	15	41989060	41989060	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	168	580	0	ENST00000219905.7:c.1852C>T	p.Arg618Ter	p.R618*	ENST00000219905	NM_001164273.1	618	Cga/Tga																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749074	43749074	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	235	645	0	ENST00000382044.4:c.1732C>T	p.Gln578Ter	p.Q578*	ENST00000382044	NM_001141980.1	578	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120223	70120223	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	180	617	0	ENST00000245479.2:c.1225G>T	p.Glu409Ter	p.E409*	ENST00000245479	NM_000346.3	409	Gag/Tag																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814684	139814684	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0029820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	116	376	0	ENST00000247668.2:c.679-2A>C		p.X227_splice	ENST00000247668	NM_021138.3	227																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44935993	44935993	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0029820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	31	229	0	ENST00000377967.4:c.2754T>A	p.Cys918Ter	p.C918*	ENST00000377967	NM_021140.2	918	tgT/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0029821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	348	384	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	131	248	1	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	215	263	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	34	239	0	ENST00000281708.4:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000281708	NM_033632.3	545	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	135	529	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17125941	17125941	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367843558		P-0029821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	149	503	0	ENST00000285071.4:c.653G>A	p.Arg218His	p.R218H	ENST00000285071	NM_144997.5	218	cGt/cAt																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154868	2154868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	142	641	0	ENST00000434045.2:c.353G>A	p.Arg118His	p.R118H	ENST00000434045	NM_001127598.1	118	cGc/cAc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554363	63555385	+	splice_acceptor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	TGGTATCCTTCAGGTTCATCTGCCTGAATCCATTGCAGGCAAACCAGAAGTCTAAGGTATCCACGCATTTCTCCCTCTCCAGGAAAGTTCGGAACAGGTAAGCACCGTCTTGATCGCCCAATAAGGAGTGTAAGGACTTGGTCCACCGGGTCAGAGGGGAATCCGGAGATGCCCGCCCCTCCGGCTCCCCCAACCCATCTTCGTTCCGCCTGGTGTTGGAAGAGACAGGCATGGGTTTGGTGACCTGGCCCTTGCCCACCCCTGGCTGACACGGTGGGGTCTCCCCTTCTTCCCCTGGCACTGGGGGCCGCGGGGCATCCTCACGGAAGCTGCTGCTGGGGTCCGGGAGGCAAGTCACCAACATAGCGCTACTCATGGTGAGGGAGCTCTTCCCACTGAGTCTGGGAATTTTTCTTCTTCCAGTTCCTCTCAGCAATCGGCGTGGTCTCTCTGTCTCTCTCAAGTCAGCAGGGGCTCATCTGAACCTCCTCTCTGGAAAGAAAAGGAAGGGGGGAGGTGGGGAGAGAGAAAAGGGTATTGATCTAATCAAAACCAGATCTACCCAACATCAAAGCAAGAAAGTAAACAGGCTTTTCAACTCCTCAAATTCAAATCAAGCAACCCAGCTATCTGCGAGGTGCTCATCTAAAGTATCAGGCGCTGCTTTTCAAAAGCGAAATCTGAGCTCCCTGCACACTTTTCGGGGTTGGGGGTGGGAGGGAGCTGTTGGGAAAGAGGCGGGGAAGGTGAGAGGAAGGCAAGAGCTGGGGACGGCAGGGGGACACTGGAGGTGTAAGACACAACCTTCCAAAAACCCACTCGGCCAGGGCGCACGCAGGGCAGCTCAGCCCGCGCCTCGCCTTCCCTCCCTTCCCCTCCCCCGATACCATCAACTCCAAAAAGGCGCACTCCCAGCCGCTAGGCTGTGTGCAGGTGAAACCAATTTCGGTATATTTCCCCACTCGGCCCTGCACAGATAACTCGAGCTCCAAACGTGCCCTTCCCCGGCATCTGGTTCCCATT	TGGTATCCTTCAGGTTCATCTGCCTGAATCCATTGCAGGCAAACCAGAAGTCTAAGGTATCCACGCATTTCTCCCTCTCCAGGAAAGTTCGGAACAGGTAAGCACCGTCTTGATCGCCCAATAAGGAGTGTAAGGACTTGGTCCACCGGGTCAGAGGGGAATCCGGAGATGCCCGCCCCTCCGGCTCCCCCAACCCATCTTCGTTCCGCCTGGTGTTGGAAGAGACAGGCATGGGTTTGGTGACCTGGCCCTTGCCCACCCCTGGCTGACACGGTGGGGTCTCCCCTTCTTCCCCTGGCACTGGGGGCCGCGGGGCATCCTCACGGAAGCTGCTGCTGGGGTCCGGGAGGCAAGTCACCAACATAGCGCTACTCATGGTGAGGGAGCTCTTCCCACTGAGTCTGGGAATTTTTCTTCTTCCAGTTCCTCTCAGCAATCGGCGTGGTCTCTCTGTCTCTCTCAAGTCAGCAGGGGCTCATCTGAACCTCCTCTCTGGAAAGAAAAGGAAGGGGGGAGGTGGGGAGAGAGAAAAGGGTATTGATCTAATCAAAACCAGATCTACCCAACATCAAAGCAAGAAAGTAAACAGGCTTTTCAACTCCTCAAATTCAAATCAAGCAACCCAGCTATCTGCGAGGTGCTCATCTAAAGTATCAGGCGCTGCTTTTCAAAAGCGAAATCTGAGCTCCCTGCACACTTTTCGGGGTTGGGGGTGGGAGGGAGCTGTTGGGAAAGAGGCGGGGAAGGTGAGAGGAAGGCAAGAGCTGGGGACGGCAGGGGGACACTGGAGGTGTAAGACACAACCTTCCAAAAACCCACTCGGCCAGGGCGCACGCAGGGCAGCTCAGCCCGCGCCTCGCCTTCCCTCCCTTCCCCTCCCCCGATACCATCAACTCCAAAAAGGCGCACTCCCAGCCGCTAGGCTGTGTGCAGGTGAAACCAATTTCGGTATATTTCCCCACTCGGCCCTGCACAGATAACTCGAGCTCCAAACGTGCCCTTCCCCGGCATCTGGTTCCCATT	-			P-0029821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	114	579	0	ENST00000307078.5:c.-116-529_378del		p.X39_splice	ENST00000307078	NM_004655.3	39																																																																																
EP300	2033	MSKCC	GRCh37	22	41564451	41564451	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0029821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	145	246	0	ENST00000263253.7:c.3875-2A>T		p.X1292_splice	ENST00000263253	NM_001429.3	1292																																																																																
SETD2	29072	MSKCC	GRCh37	3	47103652	47103652	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0029821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	49	267	0	ENST00000409792.3:c.6293+1G>A		p.X2098_splice	ENST00000409792	NM_014159.6	2098																																																																																
FAT1	2195	MSKCC	GRCh37	4	187542205	187542205	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	76	363	0	ENST00000441802.2:c.5535del	p.Phe1845LeufsTer21	p.F1845Lfs*21	ENST00000441802	NM_005245.3	1845	ttT/tt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0029822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	257	563	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	124	428	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0029822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	143	335	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222886	5222886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	168	509	3	ENST00000357368.4:c.2917G>A	p.Gly973Ser	p.G973S	ENST00000357368	NM_002850.3	973	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112174973	112174973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	102	217	1	ENST00000257430.4:c.3682C>T	p.Gln1228Ter	p.Q1228*	ENST00000257430	NM_000038.5	1228	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916922	178916924	+	inframe_deletion	In_Frame_Del	DEL	ACC	ACC	-			P-0029822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	187	475	3	ENST00000263967.3:c.310_312del	p.Pro104del	p.P104del	ENST00000263967	NM_006218.2	103	gaACCa/gaa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411798	63411798	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	295	394	0	ENST00000330258.3:c.1369C>T	p.Gln457Ter	p.Q457*	ENST00000330258	NM_152424.3	457	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	144	403	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0029824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	100	523	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	113	638	1	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	105	409	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130342	11130342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	35	555	1	ENST00000344626.4:c.2581G>A	p.Glu861Lys	p.E861K	ENST00000344626	NM_003072.3	861	Gag/Aag																																																																															
BTK	695	MSKCC	GRCh37	X	100611089	100611089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	30	606	0	ENST00000308731.7:c.1517G>T	p.Cys506Phe	p.C506F	ENST00000308731	NM_000061.2	506	tGt/tTt																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589843	69589843	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	18	53	0	ENST00000168712.1:c.10C>A	p.Pro4Thr	p.P4T	ENST00000168712	NM_002007.2	4	Ccc/Acc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738808	145738808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	36	739	1	ENST00000428558.2:c.2257C>T	p.Arg753Trp	p.R753W	ENST00000428558	NM_004260.3	753	Cgg/Tgg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980488	70980488	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267601982		P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	33	611	0	ENST00000276594.2:c.889G>A	p.Gly297Arg	p.G297R	ENST00000276594	NM_024504.3	297	Gga/Aga																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748369	162748369	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	52	264	2	ENST00000367921.3:c.2284-1G>T		p.X762_splice	ENST00000367921	NM_006182.2	762																																																																																
GATA3	2625	MSKCC	GRCh37	10	8111520	8111520	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	30	488	0	ENST00000346208.3:c.1006C>A	p.Pro336Thr	p.P336T	ENST00000346208		336	Cct/Act																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154780	2154780	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	31	750	0	ENST00000434045.2:c.441G>C	p.Glu147Asp	p.E147D	ENST00000434045	NM_001127598.1	147	gaG/gaC																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633518	69633518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	16	259	1	ENST00000334134.2:c.184G>A	p.Gly62Ser	p.G62S	ENST00000334134	NM_005247.2	62	Ggc/Agc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948572	71948572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	87	606	0	ENST00000298229.2:c.3284C>T	p.Pro1095Leu	p.P1095L	ENST00000298229	NM_001567.3	1095	cCa/cTa																																																																															
PGR	5241	MSKCC	GRCh37	11	100912717	100912717	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	27	355	0	ENST00000325455.5:c.2605C>G	p.Arg869Gly	p.R869G	ENST00000325455	NM_001202474.3	869	Cgt/Ggt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115409	115115409	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	16	486	0	ENST00000257566.3:c.917C>G	p.Thr306Ser	p.T306S	ENST00000257566	NM_016569.3	306	aCt/aGt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43738717	43738717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	23	458	0	ENST00000382044.4:c.2908G>T	p.Asp970Tyr	p.D970Y	ENST00000382044	NM_001141980.1	970	Gat/Tat																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945921	17945921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	88	698	0	ENST00000458235.1:c.2018G>T	p.Gly673Val	p.G673V	ENST00000458235	NM_000215.3	673	gGg/gTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024891	31024891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	65	491	0	ENST00000375687.4:c.4376G>T	p.Ser1459Ile	p.S1459I	ENST00000375687	NM_015338.5	1459	aGc/aTc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252854	36252875	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CTCTTCCACTTCGACCGACAAA	CTCTTCCACTTCGACCGACAAA	-			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	21	307	0	ENST00000300305.3:c.487_508del	p.Phe163GlyfsTer6	p.F163Gfs*6	ENST00000300305		163	TTTGTCGGTCGAAGTGGAAGAGgg/gg																																																																															
ERG	2078	MSKCC	GRCh37	21	39817408	39817408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	18	405	0	ENST00000288319.7:c.155C>T	p.Pro52Leu	p.P52L	ENST00000288319	NM_182918.3	52	cCt/cTt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670633	134670633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	27	576	0	ENST00000398015.3:c.544G>T	p.Ala182Ser	p.A182S	ENST00000398015	NM_004441.4	182	Gcc/Tcc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187530998	187530998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	41	417	0	ENST00000441802.2:c.10025C>T	p.Thr3342Ile	p.T3342I	ENST00000441802	NM_005245.3	3342	aCa/aTa																																																																															
APC	324	MSKCC	GRCh37	5	112177860	112177860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	28	320	0	ENST00000257430.4:c.6569G>T	p.Gly2190Val	p.G2190V	ENST00000257430	NM_000038.5	2190	gGa/gTa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739644	41739644	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	32	521	0	ENST00000242208.4:c.329G>T	p.Arg110Met	p.R110M	ENST00000242208	NM_002192.2	110	aGg/aTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104720	69104720	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	17	375	0	ENST00000288368.4:c.4564G>T	p.Gly1522Cys	p.G1522C	ENST00000288368	NM_024870.2	1522	Ggc/Tgc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650523	48650523	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	28	733	0	ENST00000376670.3:c.493G>T	p.Gly165Cys	p.G165C	ENST00000376670	NM_002049.3	165	Ggc/Tgc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410193	63410193	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	27	552	0	ENST00000330258.3:c.2974G>C	p.Ala992Pro	p.A992P	ENST00000330258	NM_152424.3	992	Gca/Cca																																																																															
MED12	9968	MSKCC	GRCh37	X	70343504	70343504	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	45	450	0	ENST00000374080.3:c.1678G>C	p.Ala560Pro	p.A560P	ENST00000374080		560	Gct/Cct																																																																															
MED12	9968	MSKCC	GRCh37	X	70357627	70357627	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	63	716	0	ENST00000374080.3:c.5878G>C	p.Ala1960Pro	p.A1960P	ENST00000374080		1960	Gca/Cca																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858051	152858051	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	33	433	1	ENST00000406277.2:c.564C>A	p.His188Gln	p.H188Q	ENST00000406277	NM_152274.4	188	caC/caA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	119	334	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs864622237		P-0029827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	193	417	0	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac																																																																															
TOP1	7150	MSKCC	GRCh37	20	39708783	39708783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	132	292	0	ENST00000361337.2:c.394G>T	p.Asp132Tyr	p.D132Y	ENST00000361337	NM_003286.2	132	Gat/Tat																																																																															
TOP1	7150	MSKCC	GRCh37	20	39744078	39744078	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0029827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	178	239	0	ENST00000361337.2:c.1706A>G	p.Asn569Ser	p.N569S	ENST00000361337	NM_003286.2	569	aAt/aGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974702	21974702	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	69	284	0	ENST00000304494.5:c.125A>T	p.Asn42Ile	p.N42I	ENST00000304494	NM_000077.4	42	aAt/aTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8524948	8524948	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	83	225	1	ENST00000356435.5:c.656C>A	p.Ala219Asp	p.A219D	ENST00000356435		219	gCt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398262	25398262	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913538		P-0029828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	120	339	0	ENST00000256078.4:c.57G>C	p.Leu19Phe	p.L19F	ENST00000256078	NM_033360.2	19	ttG/ttC																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0029828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	69	276	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0029828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	95	199	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457279	67457279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	70	484	0	ENST00000327367.4:c.253C>T	p.His85Tyr	p.H85Y	ENST00000327367	NM_005902.3	85	Cat/Tat																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473654	67473654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	116	411	0	ENST00000327367.4:c.734G>A	p.Gly245Glu	p.G245E	ENST00000327367	NM_005902.3	245	gGg/gAg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479756	67479756	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	58	413	0	ENST00000327367.4:c.1063T>C	p.Ser355Pro	p.S355P	ENST00000327367	NM_005902.3	355	Tcg/Ccg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639657	3639657	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1394177026		P-0029828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	176	651	1	ENST00000294008.3:c.3982G>A	p.Val1328Ile	p.V1328I	ENST00000294008	NM_032444.2	1328	Gtc/Atc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368200	45368200	+	stop_lost	Nonstop_Mutation	SNP	A	A	T			P-0029828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	64	224	0	ENST00000262160.6:c.1402T>A	p.Ter468LysextTer8	p.*468Kext*8	ENST00000262160	NM_005901.5	468	Taa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0029833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	160	490	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50358670	50358670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	44	213	0	ENST00000331340.3:c.13G>A	p.Glu5Lys	p.E5K	ENST00000331340	NM_006060.4	5	Gag/Aag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011150	12011150	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	86	273	0	ENST00000353533.5:c.557A>G	p.Asp186Gly	p.D186G	ENST00000353533	NM_003010.3	186	gAt/gGt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28880827	28880827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	114	454	0	ENST00000282397.4:c.3803C>T	p.Ser1268Leu	p.S1268L	ENST00000282397	NM_002019.4	1268	tCg/tTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111496	8111497	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	350	548	0	ENST00000346208.3:c.984dup	p.Arg329GlufsTer23	p.R329Efs*23	ENST00000346208		328	tgg/tGgg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640691	3640694	+	frameshift_variant	Frame_Shift_Del	DEL	TAAT	TAAT	-			P-0029833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	339	576	0	ENST00000294008.3:c.2945_2948del	p.Asp982AlafsTer18	p.D982Afs*18	ENST00000294008	NM_032444.2	982	gATTAc/gc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40368072	40368072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	389	505	4	ENST00000293328.3:c.1433C>T	p.Ala478Val	p.A478V	ENST00000293328	NM_012448.3	478	gCg/gTg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143003260	143003260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	65	447	0	ENST00000262992.4:c.2566G>A	p.Glu856Lys	p.E856K	ENST00000262992	NM_001101669.1	856	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0029834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	404	412	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0029834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	94	279	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17384726	17384726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368554117		P-0029834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	186	636	0	ENST00000359435.4:c.358G>A	p.Ala120Thr	p.A120T	ENST00000359435	NM_001033549.1	120	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578432	7578445	+	frameshift_variant	Frame_Shift_Del	DEL	TGACTGCTTGTAGA	TGACTGCTTGTAGA	-			P-0029834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	396	613	0	ENST00000269305.4:c.485_498del	p.Ile162ThrfsTer14	p.I162Tfs*14	ENST00000269305	NM_001126112.2	162	aTCTACAAGCAGTCA/a																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45422921	45422922	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	101	298	0	ENST00000262160.6:c.206dup	p.Asn69LysfsTer3	p.N69Kfs*3	ENST00000262160	NM_005901.5	69	aac/aaAc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1650241	1650241	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	188	578	0	ENST00000344749.5:c.7C>T	p.Gln3Ter	p.Q3*	ENST00000344749	NM_001136139.2	3	Cag/Tag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5239014	5239015	+	missense_variant	Missense_Mutation	DNP	CC	CC	GG			P-0029834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	192	678	2	ENST00000357368.4:c.1764_1765inv	p.Glu589Gln	p.E589Q	ENST00000357368	NM_002850.3	588	acGGag/acCCag																																																																															
APC	324	MSKCC	GRCh37	5	112175684	112175685	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0029834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	146	265	0	ENST00000257430.4:c.4394_4395insCG	p.Gly1466ValfsTer8	p.G1466Vfs*8	ENST00000257430	NM_000038.5	1465	agt/aGCgt																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728619	190728619	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	209	502	0	ENST00000441310.2:c.2007A>T	p.Lys669Asn	p.K669N	ENST00000441310	NM_000534.4	669	aaA/aaT																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204622	128204623	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	155	577	0	ENST00000341105.2:c.818dup	p.Pro274ThrfsTer8	p.P274Tfs*8	ENST00000341105	NM_032638.4	273	gga/ggGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0029840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	349	499	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187531031	187531031	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	144	390	0	ENST00000441802.2:c.9992del	p.Asn3331IlefsTer45	p.N3331Ifs*45	ENST00000441802	NM_005245.3	3331	aAt/at																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679486	30679486	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	143	443	0	ENST00000376406.3:c.2086C>G	p.Leu696Val	p.L696V	ENST00000376406	NM_014641.2	696	Cta/Gta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	47	699	0	ENST00000269305.4:c.470T>A	p.Val157Asp	p.V157D	ENST00000269305	NM_001126112.2	157	gTc/gAc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061185	38061185	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	193	360	0	ENST00000250448.2:c.804C>A	p.Cys268Ter	p.C268*	ENST00000250448	NM_004496.3	268	tgC/tgA																																																																															
CBL	867	MSKCC	GRCh37	11	119145612	119145612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	13	287	0	ENST00000264033.4:c.818C>T	p.Thr273Met	p.T273M	ENST00000264033	NM_005188.3	273	aCg/aTg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627736	37627736	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	188	606	0	ENST00000447079.4:c.1651T>A	p.Leu551Met	p.L551M	ENST00000447079	NM_015083.1	551	Ttg/Atg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543906	212543906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	107	298	1	ENST00000342788.4:c.1493C>T	p.Ala498Val	p.A498V	ENST00000342788	NM_005235.2	498	gCt/gTt																																																																															
TET1	80312	MSKCC	GRCh37	10	70332801	70332801	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	143	454	0	ENST00000373644.4:c.706A>G	p.Thr236Ala	p.T236A	ENST00000373644	NM_030625.2	236	Acc/Gcc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720828	89720828	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	148	312	1	ENST00000371953.3:c.981del	p.Ala328GlnfsTer16	p.A328Qfs*16	ENST00000371953	NM_000314.4	327	Aaa/aa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1961228	1961228	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	54	378	0	ENST00000382891.5:c.3016T>G	p.Tyr1006Asp	p.Y1006D	ENST00000382891	NM_133335.3	1006	Tac/Gac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540752	187540752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	41	267	1	ENST00000441802.2:c.6988C>T	p.His2330Tyr	p.H2330Y	ENST00000441802	NM_005245.3	2330	Cat/Tat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540781	187541624	+	frameshift_variant	Frame_Shift_Del	DEL	TATGAGATTCCTCTATTTGGTTCTGAATCAGAATCGGTGGCTCTAACTTGAACAACAGACGTTCCAATTACAGATGCCTCAGACAGGGTCACCGCATAAGACTGCTGAGCAAACACAGGAGGGTTATCATTGATGTCGTCTACTATGATGTCCACAAATACTTCAGCATGAGCGCCCGTCAAGGAGTCAGTTGCGCGTATGCTCAGCTTATATGCCGGGTGGGCCTCAAAGTCCAGAGGAGCTATGACATTGATAACTCCAGTATTGAAGTTAATAGTGAACTGGCTGAAAGGGTCTCCGTCTGTGATGCTGTAGAACACTTTCAGGCCTTCCGGGCTGTTAGCCTGCACGTGGACCACAGGGCTGTGCACCTGGATGCTCTCTGCAATCTCTGCACTGTAGAAAGGTTTTTCAAACACAGGCATGGCTTTATTCATGACAGTGATCGGAACGATAACTTCCGCTGAAAAGGCCGGGTTCCCTCCATCTTTTGCAACCACTGTAACAAGATATTCTTTATTTAAGGTGTCAAGCTCAAATTGCTTTTTCAGTGAAATTTCACCCAAGGGTCCAATTTGAAAGTGTTCATGATGTTCCTTGAGGTAGTAATGCACTTCCCCGTTTCTGCCACTGTCTCTGTCTACAGCAGTGACATAGCGAATGACATGGCCCACCTCAGTGTCCACTTTAACAACGGCGTAGTAGGGAAGGTTGACAAACACCGGCGCATTATCATTTTGGTCTTCTACAATGACCTTCACGACAACGTGGGCCACTGCAGAAGGCTTATGTTCCTCTGTCACTTCTACAACCACATCAAACGCCTCCTGCTGCTCACGATCGA	TATGAGATTCCTCTATTTGGTTCTGAATCAGAATCGGTGGCTCTAACTTGAACAACAGACGTTCCAATTACAGATGCCTCAGACAGGGTCACCGCATAAGACTGCTGAGCAAACACAGGAGGGTTATCATTGATGTCGTCTACTATGATGTCCACAAATACTTCAGCATGAGCGCCCGTCAAGGAGTCAGTTGCGCGTATGCTCAGCTTATATGCCGGGTGGGCCTCAAAGTCCAGAGGAGCTATGACATTGATAACTCCAGTATTGAAGTTAATAGTGAACTGGCTGAAAGGGTCTCCGTCTGTGATGCTGTAGAACACTTTCAGGCCTTCCGGGCTGTTAGCCTGCACGTGGACCACAGGGCTGTGCACCTGGATGCTCTCTGCAATCTCTGCACTGTAGAAAGGTTTTTCAAACACAGGCATGGCTTTATTCATGACAGTGATCGGAACGATAACTTCCGCTGAAAAGGCCGGGTTCCCTCCATCTTTTGCAACCACTGTAACAAGATATTCTTTATTTAAGGTGTCAAGCTCAAATTGCTTTTTCAGTGAAATTTCACCCAAGGGTCCAATTTGAAAGTGTTCATGATGTTCCTTGAGGTAGTAATGCACTTCCCCGTTTCTGCCACTGTCTCTGTCTACAGCAGTGACATAGCGAATGACATGGCCCACCTCAGTGTCCACTTTAACAACGGCGTAGTAGGGAAGGTTGACAAACACCGGCGCATTATCATTTTGGTCTTCTACAATGACCTTCACGACAACGTGGGCCACTGCAGAAGGCTTATGTTCCTCTGTCACTTCTACAACCACATCAAACGCCTCCTGCTGCTCACGATCGA	-			P-0029843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	45	254	0	ENST00000441802.2:c.6116_6959del	p.Phe2039SerfsTer16	p.F2039Sfs*16	ENST00000441802	NM_005245.3	2039	tTCGATCGTGAGCAGCAGGAGGCGTTTGATGTGGTTGTAGAAGTGACAGAGGAACATAAGCCTTCTGCAGTGGCCCACGTTGTCGTGAAGGTCATTGTAGAAGACCAAAATGATAATGCGCCGGTGTTTGTCAACCTTCCCTACTACGCCGTTGTTAAAGTGGACACTGAGGTGGGCCATGTCATTCGCTATGTCACTGCTGTAGACAGAGACAGTGGCAGAAACGGGGAAGTGCATTACTACCTCAAGGAACATCATGAACACTTTCAAATTGGACCCTTGGGTGAAATTTCACTGAAAAAGCAATTTGAGCTTGACACCTTAAATAAAGAATATCTTGTTACAGTGGTTGCAAAAGATGGAGGGAACCCGGCCTTTTCAGCGGAAGTTATCGTTCCGATCACTGTCATGAATAAAGCCATGCCTGTGTTTGAAAAACCTTTCTACAGTGCAGAGATTGCAGAGAGCATCCAGGTGCACAGCCCTGTGGTCCACGTGCAGGCTAACAGCCCGGAAGGCCTGAAAGTGTTCTACAGCATCACAGACGGAGACCCTTTCAGCCAGTTCACTATTAACTTCAATACTGGAGTTATCAATGTCATAGCTCCTCTGGACTTTGAGGCCCACCCGGCATATAAGCTGAGCATACGCGCAACTGACTCCTTGACGGGCGCTCATGCTGAAGTATTTGTGGACATCATAGTAGACGACATCAATGATAACCCTCCTGTGTTTGCTCAGCAGTCTTATGCGGTGACCCTGTCTGAGGCATCTGTAATTGGAACGTCTGTTGTTCAAGTTAGAGCCACCGATTCTGATTCAGAACCAAATAGAGGAATCTCATAc/tc																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997439	149997440	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0029843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	65	504	2	ENST00000253339.5:c.2839_2840delinsAT	p.Gln947Ile	p.Q947I	ENST00000253339		947	CAa/ATa																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0029845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	230	484	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0029845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	9	564	1	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																															
CDH1	999	MSKCC	GRCh37	16	68862204	68862205	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0029845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	107	515	0	ENST00000261769.5:c.2293_2294dup	p.Gln765HisfsTer6	p.Q765Hfs*6	ENST00000261769	NM_004360.3	764	-/CA																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244613	41244613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	99	676	4	ENST00000357654.3:c.2935C>T	p.Arg979Cys	p.R979C	ENST00000357654	NM_007294.3	979	Cgt/Tgt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178217	56178217	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	90	296	2	ENST00000399503.3:c.3190A>T	p.Arg1064Ter	p.R1064*	ENST00000399503	NM_005921.1	1064	Aga/Tga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	147	521	1	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																																																															
CDH1	999	MSKCC	GRCh37	16	68856025	68856026	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	295	409	0	ENST00000261769.5:c.1834dup	p.Ile612AsnfsTer5	p.I612Nfs*5	ENST00000261769	NM_004360.3	611	-/A																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460410	8460410	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0029850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	45	177	0	ENST00000356435.5:c.3875+1G>T		p.X1292_splice	ENST00000356435		1292																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0029852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	78	172	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715621	30715621	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	107	193	0	ENST00000359013.4:c.1354C>G	p.Pro452Ala	p.P452A	ENST00000359013	NM_001024847.2	452	Cca/Gca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214613	5214613	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	226	615	0	ENST00000357368.4:c.4453G>T	p.Ala1485Ser	p.A1485S	ENST00000357368	NM_002850.3	1485	Gcg/Tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0029853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	593	485	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552822		P-0029853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	322	393	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																															
ATM	472	MSKCC	GRCh37	11	108115595	108115595	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	116	387	0	ENST00000278616.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000278616	NM_000051.3	248	cGa/cTa																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56772422	56772422	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2448	460	464	0	ENST00000337432.4:c.276G>C	p.Glu92Asp	p.E92D	ENST00000337432	NM_058216.2	92	gaG/gaC																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989515	212989515	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	116	309	0	ENST00000342788.4:c.196A>G	p.Thr66Ala	p.T66A	ENST00000342788	NM_005235.2	66	Acc/Gcc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106524698	106524698	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	83	224	0	ENST00000359195.3:c.2859G>C	p.Met953Ile	p.M953I	ENST00000359195	NM_002649.2	953	atG/atC																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0029868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	138	363	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1202793339		P-0029868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	138	424	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0029870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	39	480	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	34	393	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543828	212543828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	35	329	1	ENST00000342788.4:c.1571G>A	p.Arg524His	p.R524H	ENST00000342788	NM_005235.2	524	cGc/cAc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482874	67482874	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0029870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	31	336	0	ENST00000327367.4:c.1278G>C	p.Ter426TyrextTer6	p.*426Yext*6	ENST00000327367	NM_005902.3	426	taG/taC																																																																															
CASP8	841	MSKCC	GRCh37	2	202149778	202149778	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	52	449	0	ENST00000358485.4:c.1219C>G	p.Leu407Val	p.L407V	ENST00000358485	NM_001080125.1	407	Ctt/Gtt																																																																															
TET1	80312	MSKCC	GRCh37	10	70332816	70332816	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	230	814	0	ENST00000373644.4:c.721A>G	p.Lys241Glu	p.K241E	ENST00000373644	NM_030625.2	241	Aaa/Gaa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577447	64577447	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	243	743	0	ENST00000337652.1:c.135G>C	p.Glu45Asp	p.E45D	ENST00000337652	NM_130803.2	45	gaG/gaC																																																																															
MAX	4149	MSKCC	GRCh37	14	65560535	65560535	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0029916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	120	409	1	ENST00000358664.4:c.64-2A>G		p.X22_splice	ENST00000358664	NM_002382.4	22																																																																																
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	110	580	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115903	8115904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	104	590	0	ENST00000346208.3:c.1251dupC	p.Thr418HisfsTer89	p.T418Hfs*89	ENST00000346208		417	acc/aCcc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864215	117864215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	85	461	0	ENST00000297338.2:c.1442G>A	p.Gly481Glu	p.G481E	ENST00000297338	NM_006265.2	481	gGa/gAa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864273	57864273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	39	468	0	ENST00000228682.2:c.1750G>A	p.Ala584Thr	p.A584T	ENST00000228682	NM_005269.2	584	Gcc/Acc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867333	45867333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	74	683	0	ENST00000391945.4:c.860G>A	p.Arg287His	p.R287H	ENST00000391945	NM_000400.3	287	cGt/cAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29576091	29576091	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0029937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	100	529	0	ENST00000358273.4:c.4064C>G	p.Ser1355Ter	p.S1355*	ENST00000358273	NM_001042492.2	1355	tCa/tGa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610154	10610154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	107	679	1	ENST00000171111.5:c.556G>A	p.Gly186Ser	p.G186S	ENST00000171111	NM_203500.1	186	Ggc/Agc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432297	49432297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	38	837	0	ENST00000301067.7:c.8842C>T	p.Pro2948Ser	p.P2948S	ENST00000301067	NM_003482.3	2948	Cca/Tca																																																																															
RAD50	10111	MSKCC	GRCh37	5	131953792	131953792	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	86	301	0	ENST00000265335.6:c.3195C>A	p.Asp1065Glu	p.D1065E	ENST00000265335		1065	gaC/gaA																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118857	115118860	+	frameshift_variant	Frame_Shift_Del	DEL	GACA	GACA	-			P-0029945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	39	391	0	ENST00000257566.3:c.481_484del	p.Cys161ValfsTer46	p.C161Vfs*46	ENST00000257566	NM_016569.3	161	TGTCgt/gt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138487	2138487	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	87	770	0	ENST00000219476.3:c.5300T>C	p.Leu1767Pro	p.L1767P	ENST00000219476	NM_000548.3	1767	cTg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0029948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	188	606	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	181	445	4	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
CDH1	999	MSKCC	GRCh37	16	68853286	68853286	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	232	425	0	ENST00000261769.5:c.1669A>T	p.Lys557Ter	p.K557*	ENST00000261769	NM_004360.3	557	Aag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0029966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	111	542	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984782	11984782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1164096095		P-0029966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	38	396	1	ENST00000353533.5:c.328C>T	p.Arg110Ter	p.R110*	ENST00000353533	NM_003010.3	110	Cga/Tga																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612900	228612900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	40	456	0	ENST00000366696.1:c.127C>T	p.Arg43Trp	p.R43W	ENST00000366696	NM_003493.2	43	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	99	368	1	ENST00000263967.3:c.3132T>G	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaG																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643510	52643510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	50	452	1	ENST00000394830.3:c.2386G>A	p.Glu796Lys	p.E796K	ENST00000394830	NM_018313.4	796	Gag/Aag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55143614	55143614	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	21	326	0	ENST00000257290.5:c.1846A>G	p.Ser616Gly	p.S616G	ENST00000257290	NM_006206.4	616	Agc/Ggc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0030014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	30	553	1	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692835	89692835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	106	195	0	ENST00000371953.3:c.319G>T	p.Asp107Tyr	p.D107Y	ENST00000371953	NM_000314.4	107	Gat/Tat																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46724370	46724370	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138566817		P-0030014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	279	619	0	ENST00000371975.4:c.223C>T	p.Arg75Ter	p.R75*	ENST00000371975	NM_003579.3	75	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	322	737	1	ENST00000269305.4:c.472C>A	p.Arg158Ser	p.R158S	ENST00000269305	NM_001126112.2	158	Cgc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578445	7578450	+	inframe_deletion	In_Frame_Del	DEL	ATGGCC	ATGGCC	-			P-0030014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	300	709	0	ENST00000269305.4:c.480_485del	p.Met160_Ala161del	p.M160_A161del	ENST00000269305	NM_001126112.2	160	atGGCCATc/atc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156830731	156830731	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	20	88	0	ENST00000524377.1:c.5T>A	p.Leu2Gln	p.L2Q	ENST00000524377	NM_002529.3	2	cTg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432484	49432484	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	239	683	0	ENST00000301067.7:c.8655G>C	p.Gln2885His	p.Q2885H	ENST00000301067	NM_003482.3	2885	caG/caC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448758	49448758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	243	522	0	ENST00000301067.7:c.101C>T	p.Pro34Leu	p.P34L	ENST00000301067	NM_003482.3	34	cCc/cTc																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50481248	50481248	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	178	413	0	ENST00000394963.4:c.634G>C	p.Glu212Gln	p.E212Q	ENST00000394963	NM_003076.4	212	Gaa/Caa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123627	11123627	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0030014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	120	579	0	ENST00000344626.4:c.2277C>G	p.Ile759Met	p.I759M	ENST00000344626	NM_003072.3	759	atC/atG																																																																															
SRC	6714	MSKCC	GRCh37	20	36014531	36014531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	123	607	0	ENST00000358208.4:c.304G>A	p.Asp102Asn	p.D102N	ENST00000358208		102	Gac/Aac																																																																															
SRC	6714	MSKCC	GRCh37	20	36014552	36014552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1195	116	580	0	ENST00000358208.4:c.325G>A	p.Glu109Lys	p.E109K	ENST00000358208		109	Gag/Aag																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998975	169998975	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	73	388	0	ENST00000295797.4:c.904G>C	p.Glu302Gln	p.E302Q	ENST00000295797	NM_002740.5	302	Gag/Cag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176618927	176618927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	297	575	2	ENST00000439151.2:c.970G>A	p.Gly324Arg	p.G324R	ENST00000439151	NM_022455.4	324	Gga/Aga																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056065	26056065	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	283	318	0	ENST00000343677.2:c.592G>C	p.Ala198Pro	p.A198P	ENST00000343677	NM_005319.3	198	Gct/Cct																																																																															
NBN	4683	MSKCC	GRCh37	8	90965690	90965690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	160	406	0	ENST00000265433.3:c.1627G>A	p.Glu543Lys	p.E543K	ENST00000265433	NM_002485.4	543	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	267	448	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	155	424	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245393	153245393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	203	531	0	ENST00000281708.4:c.1798G>A	p.Asp600Asn	p.D600N	ENST00000281708	NM_033632.3	600	Gat/Aat																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0030019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	222	302	0	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112176008	112176008	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	199	344	0	ENST00000257430.4:c.4717G>T	p.Glu1573Ter	p.E1573*	ENST00000257430	NM_000038.5	1573	Gaa/Taa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231728	66231728	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	114	413	0	ENST00000273854.3:c.1972G>T	p.Asp658Tyr	p.D658Y	ENST00000273854	NM_004439.5	658	Gat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112174223	112174223	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	79	372	0	ENST00000257430.4:c.2932C>T	p.Gln978Ter	p.Q978*	ENST00000257430	NM_000038.5	978	Caa/Taa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243362	46243362	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0030019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	71	234	0	ENST00000334344.6:c.1716-1G>A		p.X572_splice	ENST00000334344	NM_152641.2	572																																																																																
SOX9	6662	MSKCC	GRCh37	17	70120261	70120261	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	228	778	0	ENST00000245479.2:c.1266delC	p.Phe423SerfsTer47	p.F423Sfs*47	ENST00000245479	NM_000346.3	421	agC/ag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467685	66467685	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	106	360	0	ENST00000273854.3:c.584T>G	p.Leu195Arg	p.L195R	ENST00000273854	NM_004439.5	195	cTg/cGg																																																																															
APC	324	MSKCC	GRCh37	5	112102931	112102931	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	252	356	0	ENST00000257430.4:c.266C>A	p.Ser89Ter	p.S89*	ENST00000257430	NM_000038.5	89	tCa/tAa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53247013	53247013	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	97	595	0	ENST00000375401.3:c.487C>A	p.Pro163Thr	p.P163T	ENST00000375401	NM_004187.3	163	Ccc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	44	582	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0030024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	58	492	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
APC	324	MSKCC	GRCh37	5	112154992	112154992	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	98	429	1	ENST00000257430.4:c.1263G>A	p.Trp421Ter	p.W421*	ENST00000257430	NM_000038.5	421	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578412	7578413	+	missense_variant	Missense_Mutation	DNP	AC	AC	CT			P-0030025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	53	469	0	ENST00000269305.4:c.517_518delinsAG	p.Val173Arg	p.V173R	ENST00000269305	NM_001126112.2	173	GTg/AGg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350593	15350593	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	292	679	0	ENST00000263377.2:c.3322G>C	p.Val1108Leu	p.V1108L	ENST00000263377	NM_058243.2	1108	Gtg/Ctg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119595341	119595342	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0030029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	86	211	0	ENST00000316626.5:c.827dup	p.Thr277AsnfsTer16	p.T277Nfs*16	ENST00000316626		276	cca/ccCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0030050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	41	313	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220579	1220579	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0030050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	184	616	3	ENST00000326873.7:c.598-1G>T		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118344369	118344369	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	26	217	0	ENST00000534358.1:c.2495C>G	p.Pro832Arg	p.P832R	ENST00000534358	NM_005933.3	832	cCt/cGt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63531780	63531780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	100	553	2	ENST00000307078.5:c.2201C>T	p.Ala734Val	p.A734V	ENST00000307078	NM_004655.3	734	gCc/gTc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729699	41729699	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	82	482	0	ENST00000242208.4:c.830G>T	p.Gly277Val	p.G277V	ENST00000242208	NM_002192.2	277	gGt/gTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151851432	151851432	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	71	491	0	ENST00000262189.6:c.12059A>G	p.Asp4020Gly	p.D4020G	ENST00000262189	NM_170606.2	4020	gAt/gGt																																																																															
ARAF	369	MSKCC	GRCh37	X	47426509	47426509	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	97	314	0	ENST00000377045.4:c.852G>T	p.Leu284Phe	p.L284F	ENST00000377045	NM_001654.4	284	ttG/ttT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0030111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	77	428	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857679	9857679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	68	332	0	ENST00000330684.3:c.3722G>A	p.Arg1241Gln	p.R1241Q	ENST00000330684	NM_001134407.1	1241	cGg/cAg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600429	10600429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	139	616	0	ENST00000171111.5:c.1426G>A	p.Gly476Arg	p.G476R	ENST00000171111	NM_203500.1	476	Ggg/Agg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207065	1207074	+	protein_altering_variant	In_Frame_Del	DEL	GGGGGACCTG	GGGGGACCTG	CCCC			P-0030111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	104	617	3	ENST00000326873.7:c.153_162delinsCCCC	p.Met51_Leu54delinsIlePro	p.M51_L54delinsIP	ENST00000326873	NM_000455.4	51	atGGGGGACCTG/atCCCC																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123623	11123623	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0030111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	83	419	0	ENST00000344626.4:c.2275-2A>T		p.X759_splice	ENST00000344626	NM_003072.3	759																																																																																
HIST1H3B	8358	MSKCC	GRCh37	6	26031951	26031955	+	stop_gained	Nonsense_Mutation	INS	ATGGC	ATGGC	TTTGTGTCCTCAAAGAGCCTTAGCAAAGGTTTGTGTCCTTA			P-0030111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	24	345	0	ENST00000244661.2:c.334_338delinsTAAGGACACAAACCTTTGCTAAGGCTCTTTGAGGACACAAA	p.Ala112_Ile113delinsTer	p.A112_I113delins*	ENST00000244661	NM_003537.3	112	GCCATc/TAAGGACACAAACCTTTGCTAAGGCTCTTTGAGGACACAAAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			397	106	426	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0001554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	43	387	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175006	112175006	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0001554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	48	344	0	ENST00000257430.4:c.3715A>T	p.Arg1239Ter	p.R1239*	ENST00000257430	NM_000038.5	1239	Aga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5240338	5240338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			191	58	309	0	ENST00000357368.4:c.1576G>A	p.Gly526Ser	p.G526S	ENST00000357368	NM_002850.3	526	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577571	+	frameshift_variant	Frame_Shift_Del	DEL	GAACTGTTACACA	GAACTGTTACACA	TG			P-0001554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			178	54	303	0	ENST00000269305.4:c.710_722delinsCA	p.Met237ThrfsTer23	p.M237Tfs*23	ENST00000269305	NM_001126112.2	237	aTGTGTAACAGTTCc/aCAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934578		P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	69	159	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																															
CASP8	841	MSKCC	GRCh37	2	202131505	202131505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	77	147	0	ENST00000358485.4:c.473C>T	p.Ser158Phe	p.S158F	ENST00000358485	NM_001080125.1	158	tCt/tTt																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439886	51439886	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	55	99	0	ENST00000262662.1:c.451G>C	p.Glu151Gln	p.E151Q	ENST00000262662		151	Gag/Cag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178097986	178097986	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	143	212	0	ENST00000397062.3:c.394G>C	p.Asp132His	p.D132H	ENST00000397062	NM_006164.4	132	Gac/Cac																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098816	178098816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	173	305	0	ENST00000397062.3:c.229G>C	p.Asp77His	p.D77H	ENST00000397062	NM_006164.4	77	Gat/Cat																																																																															
CASP8	841	MSKCC	GRCh37	2	202151270	202151270	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	193	291	0	ENST00000358485.4:c.1570C>T	p.Gln524Ter	p.Q524*	ENST00000358485	NM_001080125.1	524	Cag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098545	47098545	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	137	216	0	ENST00000409792.3:c.6729G>C	p.Gln2243His	p.Q2243H	ENST00000409792	NM_014159.6	2243	caG/caC																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186506999	186506999	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	187	306	0	ENST00000323963.5:c.1165G>C	p.Glu389Gln	p.E389Q	ENST00000323963		389	Gag/Cag																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754898	57754898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	121	210	0	ENST00000274289.3:c.292G>A	p.Glu98Lys	p.E98K	ENST00000274289	NM_006622.3	98	Gag/Aag																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26021093	26021093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	173	348	0	ENST00000357647.3:c.376C>G	p.Gln126Glu	p.Q126E	ENST00000357647	NM_003529.2	126	Cag/Gag																																																																															
EZH2	2146	MSKCC	GRCh37	7	148507491	148507491	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	138	242	0	ENST00000320356.2:c.1963G>C	p.Glu655Gln	p.E655Q	ENST00000320356	NM_004456.4	655	Gaa/Caa																																																																															
MYC	4609	MSKCC	GRCh37	8	128750684	128750684	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	128	253	0	ENST00000377970.2:c.221C>G	p.Pro74Arg	p.P74R	ENST00000377970	NM_002467.4	74	cCg/cGg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12037473	12037473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	162	183	0	ENST00000396373.4:c.1104C>A	p.Phe368Leu	p.F368L	ENST00000396373	NM_001987.4	368	ttC/ttA																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038958	12038958	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	143	182	0	ENST00000396373.4:c.1251C>A	p.Phe417Leu	p.F417L	ENST00000396373	NM_001987.4	417	ttC/ttA																																																																															
MGA	23269	MSKCC	GRCh37	15	41988358	41988358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	187	429	0	ENST00000219905.7:c.1150G>A	p.Glu384Lys	p.E384K	ENST00000219905	NM_001164273.1	384	Gaa/Aaa																																																																															
MGA	23269	MSKCC	GRCh37	15	41988433	41988433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	188	361	0	ENST00000219905.7:c.1225G>A	p.Glu409Lys	p.E409K	ENST00000219905	NM_001164273.1	409	Gaa/Aaa																																																																															
MGA	23269	MSKCC	GRCh37	15	41988442	41988442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	208	359	0	ENST00000219905.7:c.1234G>T	p.Asp412Tyr	p.D412Y	ENST00000219905	NM_001164273.1	412	Gat/Tat																																																																															
MGA	23269	MSKCC	GRCh37	15	41988745	41988745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	232	410	2	ENST00000219905.7:c.1537G>A	p.Glu513Lys	p.E513K	ENST00000219905	NM_001164273.1	513	Gaa/Aaa																																																																															
MGA	23269	MSKCC	GRCh37	15	41989055	41989055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	250	424	0	ENST00000219905.7:c.1847G>A	p.Arg616Lys	p.R616K	ENST00000219905	NM_001164273.1	616	aGg/aAg																																																																															
MGA	23269	MSKCC	GRCh37	15	41989061	41989061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	254	417	1	ENST00000219905.7:c.1853G>A	p.Arg618Gln	p.R618Q	ENST00000219905	NM_001164273.1	618	cGa/cAa																																																																															
MGA	23269	MSKCC	GRCh37	15	41989147	41989147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	190	362	0	ENST00000219905.7:c.1939G>A	p.Gly647Arg	p.G647R	ENST00000219905	NM_001164273.1	647	Ggg/Agg																																																																															
MGA	23269	MSKCC	GRCh37	15	41989174	41989174	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	189	356	0	ENST00000219905.7:c.1966G>C	p.Asp656His	p.D656H	ENST00000219905	NM_001164273.1	656	Gat/Cat																																																																															
MGA	23269	MSKCC	GRCh37	15	41991303	41991303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	264	331	0	ENST00000219905.7:c.2134G>A	p.Glu712Lys	p.E712K	ENST00000219905	NM_001164273.1	712	Gaa/Aaa																																																																															
MGA	23269	MSKCC	GRCh37	15	42035074	42035074	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	272	377	0	ENST00000219905.7:c.4916A>T	p.Glu1639Val	p.E1639V	ENST00000219905	NM_001164273.1	1639	gAg/gTg																																																																															
BLM	641	MSKCC	GRCh37	15	91354521	91354521	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	140	214	0	ENST00000355112.3:c.3961G>C	p.Val1321Leu	p.V1321L	ENST00000355112	NM_000057.2	1321	Gta/Cta																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81972490	81972490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	230	361	0	ENST00000359376.3:c.3283G>A	p.Asp1095Asn	p.D1095N	ENST00000359376	NM_002661.3	1095	Gac/Aac																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732535	74732535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	88	183	0	ENST00000359995.5:c.374G>A	p.Arg125His	p.R125H	ENST00000359995	NM_001195427.1	125	cGt/cAt																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099375	4099375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	105	258	1	ENST00000262948.5:c.743C>T	p.Ser248Leu	p.S248L	ENST00000262948	NM_030662.3	248	tCg/tTg																																																																															
CALR	811	MSKCC	GRCh37	19	13051236	13051236	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	176	338	0	ENST00000316448.5:c.672G>C	p.Lys224Asn	p.K224N	ENST00000316448	NM_004343.3	224	aaG/aaC																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098623	47098871	+	inframe_deletion	In_Frame_Del	DEL	AAGGGGTTCTGTAGAATGTCCCACCAAGGGCTGAGCATGATCATAAGGAGCAGGAGAACACACTGGGTCCATGCTGGGTGTGGGCAGGAGCACCTTTCCAGCATTAGGGTTGCTGGGATCCACATAGGCCTGCATGGGATAACCTGGTGGGTAACCAGCAAAGGGATGATGCGGGGCATTATAACCAAGAGAGTCATAGGGCAGTGGTGATGTCATTCCCAGGTTCTGCATCTGTTGCTGTTGTTTCTG	AAGGGGTTCTGTAGAATGTCCCACCAAGGGCTGAGCATGATCATAAGGAGCAGGAGAACACACTGGGTCCATGCTGGGTGTGGGCAGGAGCACCTTTCCAGCATTAGGGTTGCTGGGATCCACATAGGCCTGCATGGGATAACCTGGTGGGTAACCAGCAAAGGGATGATGCGGGGCATTATAACCAAGAGAGTCATAGGGCAGTGGTGATGTCATTCCCAGGTTCTGCATCTGTTGCTGTTGTTTCTG	-			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	66	210	0	ENST00000409792.3:c.6403_6651del	p.Gln2135_Leu2217del	p.Q2135_L2217del	ENST00000409792	NM_014159.6	2135	CAGAAACAACAGCAACAGATGCAGAACCTGGGAATGACATCACCACTGCCCTATGACTCTCTTGGTTATAATGCCCCGCATCATCCCTTTGCTGGTTACCCACCAGGTTATCCCATGCAGGCCTATGTGGATCCCAGCAACCCTAATGCTGGAAAGGTGCTCCTGCCCACACCCAGCATGGACCCAGTGTGTTCTCCTGCTCCTTATGATCATGCTCAGCCCTTGGTGGGACATTCTACAGAACCCCTT/-																																																																															
MGA	23269	MSKCC	GRCh37	15	41989042	41989042	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	255	429	0	ENST00000219905.7:c.1835del	p.Gly612GlufsTer9	p.G612Efs*9	ENST00000219905	NM_001164273.1	612	Gga/ga																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026961	71026984	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAAGGTGGAGTATCTACCTGACG	AAAAGGTGGAGTATCTACCTGACG	-			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	79	111	0	ENST00000318789.4:c.1343_1348+18del		p.X448_splice	ENST00000318789	NM_032682.5	448																																																																																
PMAIP1	5366	MSKCC	GRCh37	18	57569947	57569947	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	245	201	0	ENST00000316660.6:c.127del	p.Leu43Ter	p.L43*	ENST00000316660	NM_021127.2	43	Ctg/tg																																																																															
MGA	23269	MSKCC	GRCh37	15	41988895	41988899	+	missense_variant	Missense_Mutation	ONP	GAAAG	GAAAG	AAAAA			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	245	366	0	ENST00000219905.7:c.1687_1691delinsAAAAA	p.Glu563_Arg564delinsLysLys	p.E563_R564delinsKK	ENST00000219905	NM_001164273.1	563	GAAAGa/AAAAAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	114	472	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	61	358	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	109	358	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922324	178922324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793732		P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	36	320	0	ENST00000263967.3:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000263967	NM_006218.2	365	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	39	255	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	94	324	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ALK	238	MSKCC	GRCh37	2	29754890	29754890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	26	317	0	ENST00000389048.3:c.1045G>A	p.Val349Ile	p.V349I	ENST00000389048	NM_004304.4	349	Gtc/Atc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275099	41275099	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	42	391	0	ENST00000349496.5:c.1265G>T	p.Gly422Val	p.G422V	ENST00000349496	NM_001904.3	422	gGa/gTa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71037144	71037144	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	59	260	0	ENST00000318789.4:c.1146+1G>A		p.X382_splice	ENST00000318789	NM_032682.5	382																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952086	178952086	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	51	317	0	ENST00000263967.3:c.3141T>G	p.His1047Gln	p.H1047Q	ENST00000263967	NM_006218.2	1047	caT/caG																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355010	73355010	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	91	258	0	ENST00000377767.4:c.360C>G	p.Phe120Leu	p.F120L	ENST00000377767	NM_014953.3	120	ttC/ttG																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52725412	52725412	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770194852		P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	31	390	0	ENST00000322088.6:c.1579C>T	p.Arg527Cys	p.R527C	ENST00000322088	NM_014225.5	527	Cgc/Tgc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119829	70119832	+	frameshift_variant	Frame_Shift_Del	DEL	GCTG	GCTG	CCT			P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	180	424	0	ENST00000245479.2:c.831_834delinsCCT	p.Glu277AspfsTer106	p.E277Dfs*106	ENST00000245479	NM_000346.3	277	gaGCTG/gaCCT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0005763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1137	232	737	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
RB1	5925	MSKCC	GRCh37	13	48947564	48947567	+	frameshift_variant	Frame_Shift_Del	DEL	AATT	AATT	-			P-0005763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	121	591	0	ENST00000267163.4:c.1154_1157del	p.Leu385Ter	p.L385*	ENST00000267163	NM_000321.2	384	cAATTa/ca																																																																															
MED12	9968	MSKCC	GRCh37	X	70357724	70357727	+	frameshift_variant	Frame_Shift_Del	DEL	AACA	AACA	-			P-0005763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	299	558	0	ENST00000374080.3:c.5975_5978del	p.Gln1992ArgfsTer18	p.Q1992Rfs*18	ENST00000374080		1992	cAACAg/cg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242478	55242507	+	protein_altering_variant	In_Frame_Del	DEL	GCAACATCTCCGAAAGCCAACAAGGAAATC	GCAACATCTCCGAAAGCCAACAAGGAAATC	CCAACA			P-0005763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	321	674	0	ENST00000275493.2:c.2248_2277delinsCCAACA	p.Ala750_Ile759delinsProThr	p.A750_I759delinsPT	ENST00000275493	NM_005228.3	750	GCAACATCTCCGAAAGCCAACAAGGAAATC/CCAACA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0007113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	153	342	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828161	243828161	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	43	372	0	ENST00000263826.5:c.197G>C	p.Arg66Pro	p.R66P	ENST00000263826	NM_005465.4	66	cGa/cCa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098416	47098416	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0007113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	127	451	1	ENST00000409792.3:c.6858C>G	p.Tyr2286Ter	p.Y2286*	ENST00000409792	NM_014159.6	2286	taC/taG																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467484	66467484	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	79	427	0	ENST00000273854.3:c.785G>C	p.Cys262Ser	p.C262S	ENST00000273854	NM_004439.5	262	tGt/tCt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057584	180057584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	351	541	1	ENST00000261937.6:c.371C>T	p.Thr124Met	p.T124M	ENST00000261937	NM_182925.4	124	aCg/aTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89806486	89806486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	190	465	1	ENST00000389301.3:c.3850G>T	p.Ala1284Ser	p.A1284S	ENST00000389301	NM_000135.2	1284	Gct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577530	7577530	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	235	551	0	ENST00000269305.4:c.751A>T	p.Ile251Phe	p.I251F	ENST00000269305	NM_001126112.2	251	Atc/Ttc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575213	48575241	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGTATCACCTGGAATTGGTAAGTAGACT	TTGTATCACCTGGAATTGGTAAGTAGACT	-			P-0007113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	52	339	0	ENST00000342988.3:c.410_424+14del		p.X137_splice	ENST00000342988	NM_005359.5	137																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0008243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	23	211	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	21	418	0	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0008243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	58	588	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
WT1	7490	MSKCC	GRCh37	11	32438072	32438072	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	196	557	0	ENST00000332351.3:c.965G>T	p.Ser322Ile	p.S322I	ENST00000332351	NM_024426.4	322	aGc/aTc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114135	115114135	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	117	611	0	ENST00000257566.3:c.1082G>C	p.Gly361Ala	p.G361A	ENST00000257566	NM_016569.3	361	gGg/gCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0008925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	175	690	1	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867301	45867301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	55	592	1	ENST00000391945.4:c.892G>A	p.Ala298Thr	p.A298T	ENST00000391945	NM_000400.3	298	Gcc/Acc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0008925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	966	607	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933871	39933871	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	222	697	0	ENST00000378444.4:c.728G>T	p.Arg243Leu	p.R243L	ENST00000378444	NM_001123385.1	243	cGc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009275-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			514	182	535	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815712	32815712	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1374606443		P-0009275-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			875	136	724	0	ENST00000354258.4:c.1904G>A	p.Arg635His	p.R635H	ENST00000354258	NM_000593.5	635	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100929	27100929	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009275-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			377	244	611	0	ENST00000324856.7:c.4211A>T	p.Gln1404Leu	p.Q1404L	ENST00000324856	NM_006015.4	1404	cAg/cTg																																																																															
ATM	472	MSKCC	GRCh37	11	108214050	108214050	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009275-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	133	350	0	ENST00000278616.4:c.8370A>C	p.Arg2790Ser	p.R2790S	ENST00000278616	NM_000051.3	2790	agA/agC																																																																															
STK11	6794	MSKCC	GRCh37	19	1220578	1220582	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGGCA	AGGCA	-			P-0009275-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	289	721	0	ENST00000326873.7:c.598-2_600del		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																																
PRDM1	639	MSKCC	GRCh37	6	106555167	106555167	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009275-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			651	299	664	0	ENST00000369096.4:c.2284G>T	p.Val762Leu	p.V762L	ENST00000369096	NM_001198.3	762	Gtg/Ttg																																																																															
FANCC	2176	MSKCC	GRCh37	9	97912259	97912259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009275-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			630	113	542	2	ENST00000289081.3:c.632C>T	p.Pro211Leu	p.P211L	ENST00000289081	NM_000136.2	211	cCt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0009404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	42	368	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0009404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	31	208	2	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0009404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	78	428	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346185	152346185	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	74	887	0	ENST00000359321.1:c.385A>G	p.Thr129Ala	p.T129A	ENST00000359321	NM_005431.1	129	Aca/Gca																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604764	48604765	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	56	470	0	ENST00000342988.3:c.1587dup	p.His530ThrfsTer47	p.H530Tfs*47	ENST00000342988	NM_005359.5	529	tta/ttAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010837-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			335	33	554	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0010837-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			441	35	862	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921430	39921430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010837-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			380	28	725	2	ENST00000378444.4:c.4390G>A	p.Glu1464Lys	p.E1464K	ENST00000378444	NM_001123385.1	1464	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971145	21971146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010837-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			165	22	253	0	ENST00000304494.5:c.212dup	p.Asn71LysfsTer49	p.N71Kfs*49	ENST00000304494	NM_000077.4	71	aac/aaAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0012695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	273	440	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	270	593	0	ENST00000263967.3:c.316G>C	p.Gly106Arg	p.G106R	ENST00000263967	NM_006218.2	106	Ggc/Cgc																																																																															
POLE	5426	MSKCC	GRCh37	12	133244115	133244115	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200825008		P-0012695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	214	362	1	ENST00000320574.5:c.2293C>T	p.Arg765Cys	p.R765C	ENST00000320574	NM_006231.2	765	Cgt/Tgt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645905	67645905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	284	425	1	ENST00000264010.4:c.833G>A	p.Arg278His	p.R278H	ENST00000264010	NM_006565.3	278	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175271	112175272	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	325	341	0	ENST00000257430.4:c.3981dup	p.Gln1328ThrfsTer4	p.Q1328Tfs*4	ENST00000257430	NM_000038.5	1327	tca/tcAa																																																																															
PAK1	5058	MSKCC	GRCh37	11	77043899	77043900	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGAGG			P-0012695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1184	272	503	0	ENST00000356341.3:c.1422_1426dup	p.Ile476ThrfsTer25	p.I476Tfs*25	ENST00000356341	NM_002576.4	476	att/aCCTCAtt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013328-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			763	34	583	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0013328-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			230	32	216	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104893810		P-0013328-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			563	46	506	1	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577152	7577154	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ACC	ACC	-			P-0013650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	193	566	0	ENST00000269305.4:c.784_786delGGT	p.Gly262del	p.G262del	ENST00000269305	NM_001126112.2	262	GGT/-																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710585	114710585	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1097	155	901	0	ENST00000543371.1:c.70G>T	p.Glu24Ter	p.E24*	ENST00000543371	NM_001198531.1	24	Gag/Tag																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206696	36206760	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGGTACTTACCCTGCATCTGACTCTGAGGCTGAGGGTTAAAGGCAGTGGAGTGGTTCAGGGAGG	CTGGTACTTACCCTGCATCTGACTCTGAGGCTGAGGGTTAAAGGCAGTGGAGTGGTTCAGGGAGG	-			P-0013650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	66	385	0	ENST00000300305.3:c.752_805+11del		p.X251_splice	ENST00000300305		251																																																																																
SOX2	6657	MSKCC	GRCh37	3	181430660	181430660	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	49	327	0	ENST00000325404.1:c.512A>C	p.Tyr171Ser	p.Y171S	ENST00000325404	NM_003106.3	171	tAc/tCc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589577	67589609	+	inframe_deletion	In_Frame_Del	DEL	AAAAATTACATGAATATAACACTCAGTTTCAAG	AAAAATTACATGAATATAACACTCAGTTTCAAG	-			P-0013650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	101	315	0	ENST00000274335.5:c.1345_1377del	p.Leu449_Lys459del	p.L449_K459del	ENST00000274335		447	aAAAAATTACATGAATATAACACTCAGTTTCAAGaa/aaa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157222591	157222591	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	153	565	0	ENST00000346085.5:c.1862del	p.Pro621ArgfsTer47	p.P621Rfs*47	ENST00000346085	NM_020732.3	620	Ccc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	27	401	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	51	779	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0015390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	27	332	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015567-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			688	158	582	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574011	7574012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0015567-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			765	189	707	0	ENST00000269305.4:c.1014_1015dup	p.Glu339AlafsTer7	p.E339Afs*7	ENST00000269305	NM_001126112.2	339	gag/gCGag																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99172269	99172269	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015567-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			663	114	526	0	ENST00000074304.5:c.1835C>T	p.Thr612Ile	p.T612I	ENST00000074304	NM_001134224.1	612	aCa/aTa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680815	30680815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015567-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			626	140	555	0	ENST00000376406.3:c.904G>A	p.Asp302Asn	p.D302N	ENST00000376406	NM_014641.2	302	Gat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	272	433	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0015746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	161	538	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	256	725	2	ENST00000326873.7:c.667G>A	p.Glu223Lys	p.E223K	ENST00000326873	NM_000455.4	223	Gag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108141992	108141998	+	frameshift_variant	Frame_Shift_Del	DEL	TGTATCG	TGTATCG	-			P-0015746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	77	420	0	ENST00000278616.4:c.2937_2943delGTATCGT	p.Leu979PhefsTer11	p.L979Ffs*11	ENST00000278616	NM_000051.3	979	tTGTATCGt/tt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289167	33289167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	58	432	1	ENST00000374542.5:c.385G>A	p.Glu129Lys	p.E129K	ENST00000374542	NM_001141970.1	129	Gag/Aag																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101904946	101904946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	85	271	0	ENST00000374994.4:c.934G>A	p.Gly312Ser	p.G312S	ENST00000374994	NM_004612.2	312	Ggt/Agt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0015824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	47	359	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0015824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	91	615	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7579361	7579361	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	94	769	0	ENST00000269305.4:c.326T>C	p.Phe109Ser	p.F109S	ENST00000269305	NM_001126112.2	109	tTc/tCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	28	957	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0016407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	22	491	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242511	55242511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	8	751	0	ENST00000275493.2:c.2281G>A	p.Asp761Asn	p.D761N	ENST00000275493	NM_005228.3	761	Gat/Aat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591889	48591889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	17	663	0	ENST00000342988.3:c.1052A>G	p.Asp351Gly	p.D351G	ENST00000342988	NM_005359.5	351	gAt/gGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	42	628	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0016926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	14	448	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0016926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	21	428	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0016926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	25	303	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
AXIN2	8313	MSKCC	GRCh37	17	63532603	63532603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	32	584	0	ENST00000307078.5:c.1976G>A	p.Arg659Gln	p.R659Q	ENST00000307078	NM_004655.3	659	cGg/cAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120085	70120085	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017062-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			18	16	55	0	ENST00000245479.2:c.1087C>T	p.Gln363Ter	p.Q363*	ENST00000245479	NM_000346.3	363	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0017062-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			419	380	878	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944715	31944715	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147097287		P-0017062-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			27	29	40	0	ENST00000340398.3:c.386G>A	p.Arg129Gln	p.R129Q	ENST00000340398	NM_001013699.2	129	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175253	112175255	+	stop_gained	Nonsense_Mutation	ONP	GCG	GCG	ACT			P-0017062-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			164	131	300	0	ENST00000257430.4:c.3962_3964delinsACT	p.Ser1321_Glu1322delinsAsnTer	p.S1321_E1322delinsN*	ENST00000257430	NM_000038.5	1321	aGCGaa/aACTaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	129	958	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0017893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	40	827	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27102199	27102199	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0017893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	33	529	0	ENST00000324856.7:c.5124+1G>A		p.X1708_splice	ENST00000324856	NM_006015.4	1708																																																																																
FGF3	2248	MSKCC	GRCh37	11	69625143	69625143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	52	967	0	ENST00000334134.2:c.650C>T	p.Pro217Leu	p.P217L	ENST00000334134	NM_005247.2	217	cCg/cTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0017893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	55	1092	0	ENST00000304494.5:c.457G>C	p.Asp153His	p.D153H	ENST00000304494	NM_000077.4	153	Gac/Cac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018064-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			113	233	518	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0018064-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			228	548	640	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																															
BLM	641	MSKCC	GRCh37	15	91293262	91293262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018064-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			256	130	489	1	ENST00000355112.3:c.764G>A	p.Ser255Asn	p.S255N	ENST00000355112	NM_000057.2	255	aGt/aAt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0018064-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			223	113	458	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175770	112175771	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0018064-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			175	83	348	0	ENST00000257430.4:c.4479_4480del	p.Glu1494LysfsTer19	p.E1494Kfs*19	ENST00000257430	NM_000038.5	1493	acGGaa/acaa																																																																															
NF2	4771	MSKCC	GRCh37	22	30038209	30038209	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018064-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			618	46	560	0	ENST00000338641.4:c.382G>T	p.Asp128Tyr	p.D128Y	ENST00000338641	NM_000268.3	128	Gat/Tat																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066641	94066641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018064-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			483	118	564	0	ENST00000369303.4:c.1118G>T	p.Ser373Ile	p.S373I	ENST00000369303	NM_004440.3	373	aGt/aTt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444245	50444245	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018064-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			295	19	299	0	ENST00000331340.3:c.175G>C	p.Val59Leu	p.V59L	ENST00000331340	NM_006060.4	59	Gta/Cta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	45	566	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0018417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	45	479	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039638	47039638	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	55	538	0	ENST00000329236.7:c.856C>T	p.Gln286Ter	p.Q286*	ENST00000329236	NM_001204466.1	286	Cag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971114	21971115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	66	410	0	ENST00000304494.5:c.243dup	p.Val82ArgfsTer38	p.V82Rfs*38	ENST00000304494	NM_000077.4	81	-/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	33	775	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0019728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	68	1317	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0019728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	42	746	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0019736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	28	663	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	55	814	0	ENST00000269305.4:c.584T>G	p.Ile195Ser	p.I195S	ENST00000269305	NM_001126112.2	195	aTc/aGc																																																																															
ATM	472	MSKCC	GRCh37	11	108206595	108206595	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	27	525	0	ENST00000278616.4:c.8175T>A	p.Asp2725Glu	p.D2725E	ENST00000278616	NM_000051.3	2725	gaT/gaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380269	25380270	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCCTCTTGACCTGCTGTGTCG			P-0019736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	35	688	0	ENST00000256078.4:c.168_188dup	p.Glu62_Glu63insAspAspThrAlaGlyGlnGlu	p.E62_E63insDDTAGQE	ENST00000256078	NM_033360.2	63	gag/gaCGACACAGCAGGTCAAGAGGAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420660	49420660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	30	647	2	ENST00000301067.7:c.15089G>A	p.Arg5030His	p.R5030H	ENST00000301067	NM_003482.3	5030	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0020138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	20	991	3	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913386		P-0020138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	75	719	2	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0020138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	38	828	0	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																																
ERCC4	2072	MSKCC	GRCh37	16	14015940	14015940	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	36	679	3	ENST00000311895.7:c.260G>T	p.Arg87Leu	p.R87L	ENST00000311895	NM_005236.2	87	cGt/cTt																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504915	186504915	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0020138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	44	517	0	ENST00000323963.5:c.772del		p.X258_splice	ENST00000323963		258																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971006	21971006	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	60	811	0	ENST00000304494.5:c.352G>C	p.Ala118Pro	p.A118P	ENST00000304494	NM_000077.4	118	Gct/Cct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0020290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	73	738	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	89	716	0	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578448	7578448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	187	847	1	ENST00000269305.4:c.482C>A	p.Ala161Asp	p.A161D	ENST00000269305	NM_001126112.2	161	gCc/gAc																																																																															
NF2	4771	MSKCC	GRCh37	22	30061031	30061031	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	112	820	0	ENST00000338641.4:c.863C>G	p.Ser288Ter	p.S288*	ENST00000338641	NM_000268.3	288	tCa/tGa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141534	11141534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	119	814	0	ENST00000344626.4:c.3511G>A	p.Val1171Met	p.V1171M	ENST00000344626	NM_003072.3	1171	Gtg/Atg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040945	47040945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	134	990	1	ENST00000329236.7:c.1241C>T	p.Ser414Leu	p.S414L	ENST00000329236	NM_001204466.1	414	tCg/tTg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77070038	77070038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	48	746	0	ENST00000356341.3:c.502C>T	p.Pro168Ser	p.P168S	ENST00000356341	NM_002576.4	168	Cct/Tct																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15973622	15973622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	90	649	1	ENST00000268712.3:c.4370C>T	p.Ser1457Phe	p.S1457F	ENST00000268712	NM_006311.3	1457	tCc/tTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597494	10597494	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0020290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	107	637	0	ENST00000171111.5:c.1709G>C	p.Gly570Ala	p.G570A	ENST00000171111	NM_203500.1	570	gGa/gCa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600000	10600000	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	115	904	0	ENST00000171111.5:c.1576G>C	p.Asp526His	p.D526H	ENST00000171111	NM_203500.1	526	Gat/Cat																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663064	227663064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	52	644	1	ENST00000305123.5:c.391G>A	p.Gly131Ser	p.G131S	ENST00000305123	NM_005544.2	131	Ggt/Agt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589569	67589610	+	inframe_deletion	In_Frame_Del	DEL	TGTAGGGAAAAAATTACATGAATATAACACTCAGTTTCAAGA	TGTAGGGAAAAAATTACATGAATATAACACTCAGTTTCAAGA	-			P-0020290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	89	495	0	ENST00000274335.5:c.1332_1373del	p.Val445_Glu458del	p.V445_E458del	ENST00000274335		444	gcTGTAGGGAAAAAATTACATGAATATAACACTCAGTTTCAAGAa/gca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518025	8518025	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	122	639	0	ENST00000356435.5:c.1366A>G	p.Thr456Ala	p.T456A	ENST00000356435		456	Aca/Gca																																																																															
ABL1	25	MSKCC	GRCh37	9	133759875	133759875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	180	826	1	ENST00000318560.5:c.2198C>T	p.Ser733Leu	p.S733L	ENST00000318560	NM_005157.4	733	tCa/tTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0021113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	193	845	1	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0021113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	170	837	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1327	62	987	2	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112175437	112175438	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	37	426	0	ENST00000257430.4:c.4147dup	p.Met1383AsnfsTer3	p.M1383Nfs*3	ENST00000257430	NM_000038.5	1382	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7579476	7579484	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCAGCCT	GAGCAGCCT	CCTC			P-0021312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	159	920	0	ENST00000269305.4:c.203_211delinsGAGG	p.Glu68GlyfsTer79	p.E68Gfs*79	ENST00000269305	NM_001126112.2	68	gAGGCTGCTCcc/gGAGGcc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552822		P-0021693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	78	379	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																															
SDHA	6389	MSKCC	GRCh37	5	233751	233751	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199844384		P-0021693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	107	660	3	ENST00000264932.6:c.1055G>A	p.Arg352Gln	p.R352Q	ENST00000264932	NM_004168.2	352	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	50	444	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	83	686	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599949	10599950	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	41	796	0	ENST00000171111.5:c.1626_1627delGA	p.Glu542AspfsTer31	p.E542Dfs*31	ENST00000171111	NM_203500.1	542	gaGAcg/gacg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	42	634	0	ENST00000269305.4:c.809T>C	p.Phe270Ser	p.F270S	ENST00000269305	NM_001126112.2	270	tTt/tCt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710911	117710911	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	34	508	1	ENST00000368508.3:c.1361C>G	p.Thr454Arg	p.T454R	ENST00000368508	NM_002944.2	454	aCg/aGg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866662	37866662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	104	713	0	ENST00000269571.5:c.829G>T	p.Asp277Tyr	p.D277Y	ENST00000269571		277	Gac/Tac																																																																															
BRAF	673	MSKCC	GRCh37	7	140482926	140482927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs777474487		P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	13	654	3	ENST00000288602.6:c.1208dup	p.Ala404CysfsTer9	p.A404Cfs*9	ENST00000288602	NM_004333.4	403	cct/ccCt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2103391	2103391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	19	740	2	ENST00000219476.3:c.274G>A	p.Glu92Lys	p.E92K	ENST00000219476	NM_000548.3	92	Gag/Aag																																																																															
TP63	8626	MSKCC	GRCh37	3	189612247	189612247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	30	453	1	ENST00000264731.3:c.1999G>A	p.Ala667Thr	p.A667T	ENST00000264731	NM_003722.4	667	Gct/Act																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188940	11188940	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	34	707	0	ENST00000361445.4:c.5783A>G	p.Lys1928Arg	p.K1928R	ENST00000361445	NM_004958.3	1928	aAa/aGa																																																																															
TET1	80312	MSKCC	GRCh37	10	70451555	70451555	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	13	668	0	ENST00000373644.4:c.6395A>G	p.Tyr2132Cys	p.Y2132C	ENST00000373644	NM_030625.2	2132	tAt/tGt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21626494	21626494	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	25	697	0	ENST00000421138.2:c.1438A>T	p.Lys480Ter	p.K480*	ENST00000421138		480	Aaa/Taa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515307	103515307	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	19	427	1	ENST00000355739.4:c.1808T>A	p.Val603Glu	p.V603E	ENST00000355739	NM_000123.3	603	gTg/gAg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30105656	30105656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	13	732	0	ENST00000331968.5:c.1030G>A	p.Gly344Arg	p.G344R	ENST00000331968	NM_002742.2	344	Ggg/Agg																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2096184	2096184	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	19	804	0	ENST00000219066.1:c.323C>A	p.Ala108Glu	p.A108E	ENST00000219066	NM_002528.5	108	gCa/gAa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600032	10600032	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	51	705	0	ENST00000171111.5:c.1544T>C	p.Leu515Pro	p.L515P	ENST00000171111	NM_203500.1	515	cTg/cCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	8	344	1	ENST00000263967.3:c.353G>T	p.Gly118Val	p.G118V	ENST00000263967	NM_006218.2	118	gGt/gTt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526520	31526520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	21	903	0	ENST00000344624.3:c.520C>T	p.His174Tyr	p.H174Y	ENST00000344624		174	Cac/Tac																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222789	53222790	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	43	810	0	ENST00000375401.3:c.4146dup	p.Gln1383ThrfsTer11	p.Q1383Tfs*11	ENST00000375401	NM_004187.3	1382	-/A																																																																															
ATRX	546	MSKCC	GRCh37	X	76912060	76912060	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	11	624	0	ENST00000373344.5:c.4204C>A	p.Pro1402Thr	p.P1402T	ENST00000373344	NM_000489.3	1402	Ccc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0021866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	62	785	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207065	1207065	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	312	814	1	ENST00000326873.7:c.157delG	p.Asp53ThrfsTer11	p.D53Tfs*11	ENST00000326873	NM_000455.4	51	atG/at																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969845	81969845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	134	594	3	ENST00000359376.3:c.2914G>T	p.Val972Phe	p.V972F	ENST00000359376	NM_002661.3	972	Gtc/Ttc																																																																															
ATM	472	MSKCC	GRCh37	11	108127056	108127056	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	14	495	0	ENST00000278616.4:c.2239C>T	p.Gln747Ter	p.Q747*	ENST00000278616	NM_000051.3	747	Cag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108216543	108216543	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	51	611	0	ENST00000278616.4:c.8492T>C	p.Phe2831Ser	p.F2831S	ENST00000278616	NM_000051.3	2831	tTc/tCc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106522595	106522595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	33	730	0	ENST00000359195.3:c.2572G>A	p.Glu858Lys	p.E858K	ENST00000359195	NM_002649.2	858	Gaa/Aaa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39937117	39937117	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	150	814	0	ENST00000378444.4:c.66G>T	p.Met22Ile	p.M22I	ENST00000378444	NM_001123385.1	22	atG/atT																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0021931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	88	635	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	162	378	0				ENST00000310581	NM_198253.2																																																																																	
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	253	854	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
CALR	811	MSKCC	GRCh37	19	13054615	13054615	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs143880510		P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	71	643	2	ENST00000316448.5:c.1142A>C	p.Glu381Ala	p.E381A	ENST00000316448	NM_004343.3	381	gAg/gCg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665360	138665360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	105	889	0	ENST00000330315.3:c.205G>A	p.Glu69Lys	p.E69K	ENST00000330315	NM_023067.3	69	Gag/Aag																																																																															
WT1	7490	MSKCC	GRCh37	11	32421575	32421575	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	82	898	0	ENST00000332351.3:c.1017C>A	p.Tyr339Ter	p.Y339*	ENST00000332351	NM_024426.4	339	taC/taA																																																																															
NF1	4763	MSKCC	GRCh37	17	29559787	29559787	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	148	585	0	ENST00000358273.4:c.3384del	p.Gly1129AlafsTer13	p.G1129Afs*13	ENST00000358273	NM_001042492.2	1128	ggT/gg																																																																															
NF1	4763	MSKCC	GRCh37	17	29663932	29663932	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	62	395	0	ENST00000358273.4:c.6427G>T	p.Glu2143Ter	p.E2143*	ENST00000358273	NM_001042492.2	2143	Gaa/Taa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965575	25965575	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	232	912	0	ENST00000435504.4:c.3631A>T	p.Ser1211Cys	p.S1211C	ENST00000435504		1211	Agt/Tgt																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504965	186504965	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	79	566	0	ENST00000323963.5:c.821C>A	p.Thr274Lys	p.T274K	ENST00000323963		274	aCa/aAa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127447	55127447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	98	938	0	ENST00000257290.5:c.235G>T	p.Gly79Cys	p.G79C	ENST00000257290	NM_006206.4	79	Ggc/Tgc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081516	143081516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	69	568	0	ENST00000262992.4:c.1558G>A	p.Glu520Lys	p.E520K	ENST00000262992	NM_001101669.1	520	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112178876	112178877	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	67	559	1	ENST00000257430.4:c.7585_7586delinsTT	p.Ala2529Leu	p.A2529L	ENST00000257430	NM_000038.5	2529	GCa/TTa																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271555	26271555	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	37	525	0	ENST00000305910.3:c.58C>T	p.Gln20Ter	p.Q20*	ENST00000305910	NM_003534.2	20	Cag/Tag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675520	30675520	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	130	1051	2	ENST00000376406.3:c.2836A>T	p.Thr946Ser	p.T946S	ENST00000376406	NM_014641.2	946	Aca/Tca																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	139	621	0	ENST00000368323.3:c.270G>T	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0022320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	152	747	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RB1	5925	MSKCC	GRCh37	13	49047507	49047507	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0022320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	331	494	0	ENST00000267163.4:c.2501C>G	p.Ser834Ter	p.S834*	ENST00000267163	NM_000321.2	834	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578273	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0022320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	505	742	1	ENST00000269305.4:c.576_577delinsTT	p.Gln192_His193delinsHisTyr	p.Q192_H193delinsHY	ENST00000269305	NM_001126112.2	192	caGCat/caTTat																																																																															
SPEN	23013	MSKCC	GRCh37	1	16248742	16248742	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0022320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	199	423	0	ENST00000375759.3:c.1750-2A>G		p.X584_splice	ENST00000375759	NM_015001.2	584																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71939782	71939782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	145	926	0	ENST00000298229.2:c.409G>A	p.Glu137Lys	p.E137K	ENST00000298229	NM_001567.3	137	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426745	49426745	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	130	236	0	ENST00000301067.7:c.11743C>T	p.Gln3915Ter	p.Q3915*	ENST00000301067	NM_003482.3	3915	Cag/Tag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640899	3640899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	160	1096	1	ENST00000294008.3:c.2740G>A	p.Asp914Asn	p.D914N	ENST00000294008	NM_032444.2	914	Gat/Aat																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555347	106555347	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	106	460	0	ENST00000369096.4:c.2464C>G	p.Pro822Ala	p.P822A	ENST00000369096	NM_001198.3	822	Cca/Gca																																																																															
JAK2	3717	MSKCC	GRCh37	9	5089692	5089692	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	211	297	1	ENST00000381652.3:c.2590G>C	p.Glu864Gln	p.E864Q	ENST00000381652	NM_004972.3	864	Gag/Cag																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665029	138665029	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs7432551		P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	30	264	0	ENST00000330315.3:c.536C>G	p.Ala179Gly	p.A179G	ENST00000330315	NM_023067.3	179	gCg/gGg																																																																															
APC	324	MSKCC	GRCh37	5	112174840	112174840	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	64	443	0	ENST00000257430.4:c.3549T>A	p.Tyr1183Ter	p.Y1183*	ENST00000257430	NM_000038.5	1183	taT/taA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55220295	55220295	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	600	1019	0	ENST00000275493.2:c.685A>T	p.Ser229Cys	p.S229C	ENST00000275493	NM_005228.3	229	Agt/Tgt																																																																															
NF1	4763	MSKCC	GRCh37	17	29556992	29556992	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	32	230	0	ENST00000358273.4:c.2990G>T	p.Arg997Met	p.R997M	ENST00000358273	NM_001042492.2	997	aGg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	371	1068	2	ENST00000269305.4:c.298del	p.Gln100ArgfsTer23	p.Q100Rfs*23	ENST00000269305	NM_001126112.2	100	Cag/ag																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2494641	2494641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1260	244	943	1	ENST00000355716.4:c.781C>A	p.Pro261Thr	p.P261T	ENST00000355716	NM_003820.2	261	Cct/Act																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246021850	246021850	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145115256		P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	188	994	1	ENST00000388985.4:c.1024G>A	p.Gly342Ser	p.G342S	ENST00000388985		342	Ggc/Agc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18747483	18747483	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	248	700	0	ENST00000266497.5:c.3944A>G	p.Glu1315Gly	p.E1315G	ENST00000266497		1315	gAa/gGa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425819	49425819	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	373	804	0	ENST00000301067.7:c.12669G>T	p.Gln4223His	p.Q4223H	ENST00000301067	NM_003482.3	4223	caG/caT																																																																															
FLT1	2321	MSKCC	GRCh37	13	28886131	28886131	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	188	798	2	ENST00000282397.4:c.3491A>G	p.Gln1164Arg	p.Q1164R	ENST00000282397	NM_002019.4	1164	cAg/cGg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646259	3646259	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	226	1145	0	ENST00000294008.3:c.1819A>T	p.Arg607Trp	p.R607W	ENST00000294008	NM_032444.2	607	Agg/Tgg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351902	89351902	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	219	1293	0	ENST00000301030.4:c.1048G>C	p.Asp350His	p.D350H	ENST00000301030	NM_001256183.1	350	Gat/Cat																																																																															
NF1	4763	MSKCC	GRCh37	17	29563039	29563039	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	163	508	0	ENST00000358273.4:c.3974G>T	p.Arg1325Met	p.R1325M	ENST00000358273	NM_001042492.2	1325	aGg/aTg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46268479	46268479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	264	573	0	ENST00000371998.3:c.2866G>T	p.Gly956Cys	p.G956C	ENST00000371998		956	Ggc/Tgc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150016342	150016342	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	249	765	0	ENST00000253339.5:c.364del	p.Ala122LeufsTer10	p.A122Lfs*10	ENST00000253339		122	Gct/ct																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455070	50455070	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	360	573	0	ENST00000331340.3:c.617G>C	p.Cys206Ser	p.C206S	ENST00000331340	NM_006060.4	206	tGt/tCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	310	785	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485807	8485807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	55	391	1	ENST00000356435.5:c.3010C>A	p.Pro1004Thr	p.P1004T	ENST00000356435		1004	Cca/Aca																																																																															
MTOR	2475	MSKCC	GRCh37	1	11264642	11264642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	100	621	0	ENST00000361445.4:c.3920C>G	p.Ala1307Gly	p.A1307G	ENST00000361445	NM_004958.3	1307	gCa/gGa																																																																															
WT1	7490	MSKCC	GRCh37	11	32456356	32456356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	121	751	0	ENST00000332351.3:c.536C>T	p.Pro179Leu	p.P179L	ENST00000332351	NM_024426.4	179	cCc/cTc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012412	29012412	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	149	708	0	ENST00000282397.4:c.459G>T	p.Glu153Asp	p.E153D	ENST00000282397	NM_002019.4	153	gaG/gaT																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778522	3778522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	347	934	1	ENST00000262367.5:c.6526C>T	p.Pro2176Ser	p.P2176S	ENST00000262367	NM_004380.2	2176	Cca/Tca																																																																															
NF1	4763	MSKCC	GRCh37	17	29585516	29585516	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0022429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	24	151	0	ENST00000358273.4:c.4328C>G	p.Ser1443Ter	p.S1443*	ENST00000358273	NM_001042492.2	1443	tCa/tGa																																																																															
ATR	545	MSKCC	GRCh37	3	142281319	142281319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	87	718	0	ENST00000350721.4:c.925G>A	p.Ala309Thr	p.A309T	ENST00000350721	NM_001184.3	309	Gct/Act																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231686	66231686	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	20	658	0	ENST00000273854.3:c.2014G>T	p.Ala672Ser	p.A672S	ENST00000273854	NM_004439.5	672	Gca/Tca																																																																															
SDHA	6389	MSKCC	GRCh37	5	235377	235377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	431	654	0	ENST00000264932.6:c.1183G>T	p.Val395Phe	p.V395F	ENST00000264932	NM_004168.2	395	Gtc/Ttc																																																																															
CCND3	896	MSKCC	GRCh37	6	41908251	41908251	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	290	821	0	ENST00000372991.4:c.271T>A	p.Cys91Ser	p.C91S	ENST00000372991	NM_001760.3	91	Tgc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	170	854	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729626	162729626	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	54	691	0	ENST00000367921.3:c.712G>T	p.Gly238Cys	p.G238C	ENST00000367921	NM_006182.2	238	Ggc/Tgc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022747	12022747	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	39	657	0	ENST00000396373.4:c.853G>T	p.Val285Leu	p.V285L	ENST00000396373	NM_001987.4	285	Gtg/Ttg																																																																															
CD276	80381	MSKCC	GRCh37	15	73995383	73995383	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	77	591	0	ENST00000318443.5:c.689A>T	p.Asp230Val	p.D230V	ENST00000318443	NM_001024736.1	230	gAt/gTt																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813729	50813729	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	136	905	0	ENST00000398568.2:c.1283G>T	p.Gly428Val	p.G428V	ENST00000398568	NM_001042412.1	428	gGa/gTa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123688	11123688	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	150	895	0	ENST00000344626.4:c.2338G>T	p.Glu780Ter	p.E780*	ENST00000344626	NM_003072.3	780	Gag/Tag																																																																															
CIC	23152	MSKCC	GRCh37	19	42795045	42795045	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	351	1087	0	ENST00000575354.2:c.2125A>T	p.Thr709Ser	p.T709S	ENST00000575354	NM_015125.3	709	Act/Tct																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730817	40730817	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	82	963	0	ENST00000373198.4:c.3718C>G	p.Leu1240Val	p.L1240V	ENST00000373198	NM_133170.3	1240	Ctt/Gtt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748612	40748612	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	48	514	0	ENST00000373198.4:c.2905-1G>T		p.X969_splice	ENST00000373198	NM_133170.3	969																																																																																
SETD2	29072	MSKCC	GRCh37	3	47058615	47058615	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	182	796	0	ENST00000409792.3:c.7663T>C	p.Tyr2555His	p.Y2555H	ENST00000409792	NM_014159.6	2555	Tac/Cac																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55136903	55136903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	52	625	0	ENST00000257290.5:c.1225C>A	p.Leu409Met	p.L409M	ENST00000257290	NM_006206.4	409	Ctg/Atg																																																																															
KDR	3791	MSKCC	GRCh37	4	55976735	55976735	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	50	624	1	ENST00000263923.4:c.1092-2A>T		p.X364_splice	ENST00000263923	NM_002253.2	364																																																																																
NSD1	64324	MSKCC	GRCh37	5	176715876	176715876	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	61	837	0	ENST00000439151.2:c.6208T>C	p.Cys2070Arg	p.C2070R	ENST00000439151	NM_022455.4	2070	Tgc/Cgc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117631369	117631369	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	69	645	0	ENST00000368508.3:c.6309T>A	p.Phe2103Leu	p.F2103L	ENST00000368508	NM_002944.2	2103	ttT/ttA																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001244	150001244	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	57	751	0	ENST00000253339.5:c.2360G>T	p.Gly787Val	p.G787V	ENST00000253339		787	gGg/gTg																																																																															
PARK2	5071	MSKCC	GRCh37	6	161771151	161771151	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	127	805	2	ENST00000366898.1:c.1378del	p.Asp460ThrfsTer181	p.D460Tfs*181	ENST00000366898	NM_004562.2	460	Gac/ac																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467722	50467722	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	253	777	0	ENST00000331340.3:c.957C>G	p.Ile319Met	p.I319M	ENST00000331340	NM_006060.4	319	atC/atG																																																																															
MET	4233	MSKCC	GRCh37	7	116436018	116436018	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	61	883	0	ENST00000397752.3:c.4013C>G	p.Ser1338Ter	p.S1338*	ENST00000397752	NM_000245.2	1338	tCa/tGa																																																																															
ARAF	369	MSKCC	GRCh37	X	47424239	47424239	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	131	886	1	ENST00000377045.4:c.244G>T	p.Asp82Tyr	p.D82Y	ENST00000377045	NM_001654.4	82	Gat/Tat																																																																															
ATRX	546	MSKCC	GRCh37	X	76937617	76937617	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	39	568	0	ENST00000373344.5:c.3131A>G	p.Lys1044Arg	p.K1044R	ENST00000373344	NM_000489.3	1044	aAg/aGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	46	709	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0023018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	47	712	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	36	615	0	ENST00000304494.5:c.247C>A	p.His83Asn	p.H83N	ENST00000304494	NM_000077.4	83	Cac/Aac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	23	465	0	ENST00000342988.3:c.1157G>T	p.Gly386Val	p.G386V	ENST00000342988	NM_005359.5	386	gGt/gTt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906451	32906451	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	46	569	0	ENST00000380152.3:c.836G>T	p.Cys279Phe	p.C279F	ENST00000380152		279	tGc/tTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0023306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	204	587	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004331	150004331	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	27	547	0	ENST00000253339.5:c.1894C>G	p.Gln632Glu	p.Q632E	ENST00000253339		632	Caa/Gaa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121437308	121437308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	62	776	1	ENST00000257555.6:c.1646C>T	p.Ala549Val	p.A549V	ENST00000257555		549	gCc/gTc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100227	30100227	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0023306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	19	411	0	ENST00000331968.5:c.1393G>C	p.Glu465Gln	p.E465Q	ENST00000331968	NM_002742.2	465	Gaa/Caa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198265563	198265563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	38	802	0	ENST00000335508.6:c.2594G>A	p.Arg865Lys	p.R865K	ENST00000335508	NM_012433.2	865	aGa/aAa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71015117	71015117	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	34	578	0	ENST00000318789.4:c.1813G>C	p.Glu605Gln	p.E605Q	ENST00000318789	NM_032682.5	605	Gag/Cag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628749	187628749	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	67	733	0	ENST00000441802.2:c.2233G>C	p.Asp745His	p.D745H	ENST00000441802	NM_005245.3	745	Gac/Cac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2979559	2979559	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	43	489	0	ENST00000396946.4:c.688G>C	p.Asp230His	p.D230H	ENST00000396946	NM_032415.4	230	Gat/Cat																																																																															
NBN	4683	MSKCC	GRCh37	8	90983440	90983440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	27	504	0	ENST00000265433.3:c.663C>G	p.Ile221Met	p.I221M	ENST00000265433	NM_002485.4	221	atC/atG																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729435	41729435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	95	642	1	ENST00000242208.4:c.1094C>T	p.Ser365Leu	p.S365L	ENST00000242208	NM_002192.2	365	tCa/tTa																																																																															
ALK	238	MSKCC	GRCh37	2	30143293	30143293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	172	778	1	ENST00000389048.3:c.233C>T	p.Ser78Leu	p.S78L	ENST00000389048	NM_004304.4	78	tCg/tTg																																																																															
MET	4233	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0023534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	374	989	2	ENST00000397752.3:c.3028+3A>G		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
SPEN	23013	MSKCC	GRCh37	1	16237786	16237786	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	47	470	0	ENST00000375759.3:c.1233G>C	p.Trp411Cys	p.W411C	ENST00000375759	NM_015001.2	411	tgG/tgC																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257520	16257520	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	84	538	0	ENST00000375759.3:c.4785G>C	p.Gln1595His	p.Q1595H	ENST00000375759	NM_015001.2	1595	caG/caC																																																																															
MPL	4352	MSKCC	GRCh37	1	43818205	43818205	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0023534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	93	549	0	ENST00000372470.3:c.1670C>G	p.Ser557Ter	p.S557*	ENST00000372470	NM_005373.2	557	tCa/tGa																																																																															
MPL	4352	MSKCC	GRCh37	1	43818270	43818270	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	113	730	0	ENST00000372470.3:c.1735C>G	p.Pro579Ala	p.P579A	ENST00000372470	NM_005373.2	579	Cct/Gct																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729659	162729659	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	80	596	0	ENST00000367921.3:c.745C>G	p.His249Asp	p.H249D	ENST00000367921	NM_006182.2	249	Cac/Gac																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343663	343663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	121	1016	3	ENST00000262320.3:c.2011G>A	p.Glu671Lys	p.E671K	ENST00000262320	NM_003502.3	671	Gag/Aag																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444299	50444299	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	41	348	0	ENST00000331340.3:c.229G>C	p.Glu77Gln	p.E77Q	ENST00000331340	NM_006060.4	77	Gaa/Caa																																																																															
ARAF	369	MSKCC	GRCh37	X	47424493	47424493	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	76	631	0	ENST00000377045.4:c.413C>G	p.Ser138Cys	p.S138C	ENST00000377045	NM_001654.4	138	tCc/tGc																																																																															
MED12	9968	MSKCC	GRCh37	X	70352234	70352234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	88	595	0	ENST00000374080.3:c.4261G>A	p.Glu1421Lys	p.E1421K	ENST00000374080		1421	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577126	7577126	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	216	664	0	ENST00000269305.4:c.812A>T	p.Glu271Val	p.E271V	ENST00000269305	NM_001126112.2	271	gAg/gTg																																																																															
MPL	4352	MSKCC	GRCh37	1	43805142	43805142	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	87	663	0	ENST00000372470.3:c.592C>T	p.Gln198Ter	p.Q198*	ENST00000372470	NM_005373.2	198	Cag/Tag																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111118	193111118	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	70	455	0	ENST00000367435.3:c.651G>T	p.Glu217Asp	p.E217D	ENST00000367435	NM_024529.4	217	gaG/gaT																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741558	17741558	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	70	546	0	ENST00000250003.3:c.229G>C	p.Glu77Gln	p.E77Q	ENST00000250003	NM_002478.4	77	Gag/Cag																																																																															
ATM	472	MSKCC	GRCh37	11	108170484	108170484	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	71	510	0	ENST00000278616.4:c.5049C>G	p.Phe1683Leu	p.F1683L	ENST00000278616	NM_000051.3	1683	ttC/ttG																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231179	46231179	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	163	466	0	ENST00000334344.6:c.1099G>T	p.Asp367Tyr	p.D367Y	ENST00000334344	NM_152641.2	367	Gat/Tat																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563399	21563399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	256	929	2	ENST00000382592.4:c.520G>A	p.Glu174Lys	p.E174K	ENST00000382592	NM_014572.2	174	Gaa/Aaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38064133	38064133	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	100	596	0	ENST00000250448.2:c.45G>A	p.Trp15Ter	p.W15*	ENST00000250448	NM_004496.3	15	tgG/tgA																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170756	11170756	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	171	758	0	ENST00000344626.4:c.4804A>T	p.Lys1602Ter	p.K1602*	ENST00000344626	NM_003072.3	1602	Aag/Tag																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912435	50912435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	245	898	0	ENST00000440232.2:c.1949C>T	p.Ser650Leu	p.S650L	ENST00000440232	NM_002691.3	650	tCa/tTa																																																																															
ALK	238	MSKCC	GRCh37	2	30143522	30143522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	35	384	0	ENST00000389048.3:c.4G>A	p.Gly2Arg	p.G2R	ENST00000389048	NM_004304.4	2	Gga/Aga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52702579	52702579	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	198	754	0	ENST00000394830.3:c.319G>C	p.Asp107His	p.D107H	ENST00000394830	NM_018313.4	107	Gat/Cat																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876458	35876458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	177	717	0	ENST00000303115.3:c.1250C>A	p.Pro417His	p.P417H	ENST00000303115	NM_002185.3	417	cCt/cAt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662382	117662383	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	81	629	0	ENST00000368508.3:c.4994dup	p.Leu1665PhefsTer7	p.L1665Ffs*7	ENST00000368508	NM_002944.2	1665	ttg/ttTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151917721	151917721	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	40	192	0	ENST00000262189.6:c.3599C>G	p.Ser1200Ter	p.S1200*	ENST00000262189	NM_170606.2	1200	tCa/tGa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123217369	123217369	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	48	603	0	ENST00000218089.9:c.3023C>G	p.Ser1008Cys	p.S1008C	ENST00000218089	NM_001042749.1	1008	tCt/tGt																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152864441	152864441	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	62	263	0	ENST00000406277.2:c.85G>T	p.Ala29Ser	p.A29S	ENST00000406277	NM_152274.4	29	Gcg/Tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	200	851	2	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683659	162683659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	50	607	0	ENST00000366898.1:c.310C>T	p.Arg104Trp	p.R104W	ENST00000366898	NM_004562.2	104	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112154933	112154933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	55	739	1	ENST00000257430.4:c.1204C>T	p.Arg402Cys	p.R402C	ENST00000257430	NM_000038.5	402	Cgt/Tgt																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46546394	46546394	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	42	648	0	ENST00000262741.5:c.135G>C	p.Met45Ile	p.M45I	ENST00000262741	NM_003629.3	45	atG/atC																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430582	78430582	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	45	720	0	ENST00000370768.2:c.708G>C	p.Arg236Ser	p.R236S	ENST00000370768	NM_003902.3	236	agG/agC																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138858	64138858	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs111697527		P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	111	438	1	ENST00000334205.4:c.2225G>T	p.Arg742Leu	p.R742L	ENST00000334205	NM_003942.2	742	cGc/cTc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	442811	442811	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	60	424	0	ENST00000399788.2:c.1495G>C	p.Glu499Gln	p.E499Q	ENST00000399788	NM_001042603.1	499	Gag/Cag																																																																															
MDM2	4193	MSKCC	GRCh37	12	69222604	69222604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	43	787	0	ENST00000462284.1:c.577G>A	p.Asp193Asn	p.D193N	ENST00000462284	NM_002392.5	193	Gat/Aat																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724477	43724477	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	48	1012	0	ENST00000382044.4:c.3590A>T	p.Gln1197Leu	p.Q1197L	ENST00000382044	NM_001141980.1	1197	cAa/cTa																																																																															
PMS1	5378	MSKCC	GRCh37	2	190718779	190718779	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	75	471	0	ENST00000441310.2:c.937G>T	p.Asp313Tyr	p.D313Y	ENST00000441310	NM_000534.4	313	Gat/Tat																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719766	190719766	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	24	424	0	ENST00000441310.2:c.1768C>G	p.Leu590Val	p.L590V	ENST00000441310	NM_000534.4	590	Ctc/Gtc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125825	47125825	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	67	377	1	ENST00000409792.3:c.5445G>T	p.Leu1815Phe	p.L1815F	ENST00000409792	NM_014159.6	1815	ttG/ttT																																																																															
TET2	54790	MSKCC	GRCh37	4	106164061	106164061	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	25	442	0	ENST00000380013.4:c.3571C>G	p.Gln1191Glu	p.Q1191E	ENST00000380013	NM_001127208.2	1191	Cag/Gag																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31322916	31322916	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	184	1016	0	ENST00000412585.2:c.980T>C	p.Val327Ala	p.V327A	ENST00000412585	NM_005514.6	327	gTc/gCc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152027747	152027747	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	62	918	1	ENST00000262189.6:c.328C>T	p.Arg110Ter	p.R110*	ENST00000262189	NM_170606.2	110	Cga/Tga																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205115	38205115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	66	885	3	ENST00000317025.8:c.575G>T	p.Ser192Ile	p.S192I	ENST00000317025	NM_023034.1	192	aGc/aTc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68995534	68995534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	39	883	1	ENST00000288368.4:c.1938G>A	p.Met646Ile	p.M646I	ENST00000288368	NM_024870.2	646	atG/atA																																																																															
PREX2	80243	MSKCC	GRCh37	8	69009337	69009337	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	46	584	0	ENST00000288368.4:c.2454A>T	p.Glu818Asp	p.E818D	ENST00000288368	NM_024870.2	818	gaA/gaT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69050741	69050741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	35	453	0	ENST00000288368.4:c.4076C>A	p.Pro1359His	p.P1359H	ENST00000288368	NM_024870.2	1359	cCt/cAt																																																																															
NBN	4683	MSKCC	GRCh37	8	90967543	90967543	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	33	592	0	ENST00000265433.3:c.1365C>G	p.Ile455Met	p.I455M	ENST00000265433	NM_002485.4	455	atC/atG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0024356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	561	816	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156834552	156834552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1255	225	1063	0	ENST00000524377.1:c.320C>T	p.Ala107Val	p.A107V	ENST00000524377	NM_002529.3	107	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	438	943	1	ENST00000269305.4:c.645T>A	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agA																																																																															
DDR2	4921	MSKCC	GRCh37	1	162743310	162743310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	71	654	1	ENST00000367921.3:c.1780G>A	p.Ala594Thr	p.A594T	ENST00000367921	NM_006182.2	594	Gcc/Acc																																																																															
RB1	5925	MSKCC	GRCh37	13	48921921	48921961	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACGAAAAAATGTTAAAAAGTCATAATGTTTTTCTTTTCAGG	ACGAAAAAATGTTAAAAAGTCATAATGTTTTTCTTTTCAGG	-			P-0024356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	48	577	1	ENST00000267163.4:c.501-38_503del		p.X167_splice	ENST00000267163	NM_000321.2	167																																																																																
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0024510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	284	486	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71947022	71947022	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	403	781	1	ENST00000298229.2:c.2871G>C	p.Leu957Phe	p.L957F	ENST00000298229	NM_001567.3	957	ttG/ttC																																																																															
FLT1	2321	MSKCC	GRCh37	13	28901614	28901614	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	55	428	0	ENST00000282397.4:c.2781A>T	p.Leu927Phe	p.L927F	ENST00000282397	NM_002019.4	927	ttA/ttT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0024653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	47	729	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0024653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	74	738	1	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0024653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	78	765	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604778	48604778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767383		P-0024653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	31	498	1	ENST00000342988.3:c.1600C>T	p.Gln534Ter	p.Q534*	ENST00000342988	NM_005359.5	534	Cag/Tag																																																																															
YES1	7525	MSKCC	GRCh37	18	751726	751726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	40	614	0	ENST00000314574.4:c.350G>T	p.Arg117Ile	p.R117I	ENST00000314574	NM_005433.3	117	aGa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0024677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	227	496	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0024677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	152	418	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281360	49281360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201503697		P-0024677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	266	712	0	ENST00000282018.3:c.407G>A	p.Arg136His	p.R136H	ENST00000282018	NM_020377.2	136	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	100	355	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0024690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	36	255	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259199	36259199	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	117	416	0	ENST00000300305.3:c.292delC	p.Leu98SerfsTer24	p.L98Sfs*24	ENST00000300305		98	Ctc/tc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	162	564	0	ENST00000534358.1:c.2312C>T	p.Thr771Ile	p.T771I	ENST00000534358	NM_005933.3	771	aCc/aTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0024761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	128	539	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	283	688	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46211506	46211506	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	55	341	0	ENST00000334344.6:c.472T>A	p.Tyr158Asn	p.Y158N	ENST00000334344	NM_152641.2	158	Tat/Aat																																																																															
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	159	524	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																															
TP63	8626	MSKCC	GRCh37	3	189612073	189612073	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142762485		P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	184	571	0	ENST00000264731.3:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000264731	NM_003722.4	609	Gaa/Aaa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411420	63411420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	91	565	0	ENST00000330258.3:c.1747G>T	p.Ala583Ser	p.A583S	ENST00000330258	NM_152424.3	583	Gca/Tca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076937	41076937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	104	575	0	ENST00000373198.4:c.1483G>T	p.Gly495Trp	p.G495W	ENST00000373198	NM_133170.3	495	Ggg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	239	747	1	ENST00000269305.4:c.298del	p.Gln100ArgfsTer23	p.Q100Rfs*23	ENST00000269305	NM_001126112.2	100	Cag/ag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486175	8486175	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	150	405	0	ENST00000356435.5:c.2642C>A	p.Thr881Lys	p.T881K	ENST00000356435		881	aCa/aAa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18716403	18716403	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	104	476	0	ENST00000266497.5:c.3750G>T	p.Gln1250His	p.Q1250H	ENST00000266497		1250	caG/caT																																																																															
POLE	5426	MSKCC	GRCh37	12	133252687	133252687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	69	552	0	ENST00000320574.5:c.1013C>T	p.Pro338Leu	p.P338L	ENST00000320574	NM_006231.2	338	cCc/cTc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799210	88799210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	205	605	1	ENST00000360948.2:c.175G>T	p.Gly59Trp	p.G59W	ENST00000360948	NM_001012338.2	59	Ggg/Tgg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654637	67654637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	234	580	1	ENST00000264010.4:c.1124G>T	p.Gly375Val	p.G375V	ENST00000264010	NM_006565.3	375	gGa/gTa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41209088	41209088	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	228	621	0	ENST00000357654.3:c.5258G>C	p.Arg1753Thr	p.R1753T	ENST00000357654	NM_007294.3	1753	aGa/aCa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440688	56440688	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	83	671	1	ENST00000407977.2:c.530A>T	p.Tyr177Phe	p.Y177F	ENST00000407977		177	tAc/tTc																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66525117	66525117	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	70	287	0	ENST00000358598.2:c.876C>G	p.Phe292Leu	p.F292L	ENST00000358598	NM_212471.2	292	ttC/ttG																																																																															
UPF1	5976	MSKCC	GRCh37	19	18971792	18971792	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	161	481	1	ENST00000262803.5:c.2457+1G>T		p.X819_splice	ENST00000262803	NM_002911.3	819																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40980757	40980757	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	46	487	0	ENST00000373198.4:c.1729C>G	p.Pro577Ala	p.P577A	ENST00000373198	NM_133170.3	577	Cct/Gct																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101008	41101008	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	87	541	1	ENST00000373198.4:c.1348C>G	p.Arg450Gly	p.R450G	ENST00000373198	NM_133170.3	450	Cga/Gga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164763	47164764	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	55	435	0	ENST00000409792.3:c.1362_1363delinsTT	p.Arg454_Ala455delinsSerSer	p.R454_A455delinsSS	ENST00000409792	NM_014159.6	454	agAGca/agTTca																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521614	89521614	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	156	397	0	ENST00000336596.2:c.2691G>T	p.Arg897Ser	p.R897S	ENST00000336596	NM_005233.5	897	agG/agT																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1918750	1918750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	134	415	0	ENST00000382891.5:c.913G>T	p.Ala305Ser	p.A305S	ENST00000382891	NM_133335.3	305	Gct/Tct																																																																															
KDR	3791	MSKCC	GRCh37	4	55968139	55968139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	109	515	3	ENST00000263923.4:c.2191G>A	p.Asp731Asn	p.D731N	ENST00000263923	NM_002253.2	731	Gac/Aac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356347	66356347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	85	524	0	ENST00000273854.3:c.1150G>T	p.Gly384Cys	p.G384C	ENST00000273854	NM_004439.5	384	Ggt/Tgt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187522458	187522458	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	116	586	0	ENST00000441802.2:c.11605A>G	p.Met3869Val	p.M3869V	ENST00000441802	NM_005245.3	3869	Atg/Gtg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187525586	187525586	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	226	597	0	ENST00000441802.2:c.10493T>A	p.Leu3498Gln	p.L3498Q	ENST00000441802	NM_005245.3	3498	cTg/cAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187531164	187531164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	128	386	2	ENST00000441802.2:c.9859G>T	p.Val3287Leu	p.V3287L	ENST00000441802	NM_005245.3	3287	Gta/Tta																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250476	26250476	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	148	560	0	ENST00000446824.2:c.358A>T	p.Ile120Phe	p.I120F	ENST00000446824	NM_021018.2	120	Atc/Ttc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001138	150001138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	249	516	0	ENST00000253339.5:c.2466G>T	p.Met822Ile	p.M822I	ENST00000253339		822	atG/atT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520076	106520076	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	147	368	0	ENST00000359195.3:c.2504G>T	p.Gly835Val	p.G835V	ENST00000359195	NM_002649.2	835	gGt/gTt																																																																															
MET	4233	MSKCC	GRCh37	7	116423362	116423362	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	85	299	0	ENST00000397752.3:c.3637G>C	p.Asp1213His	p.D1213H	ENST00000397752	NM_000245.2	1213	Gat/Cat																																																																															
SYK	6850	MSKCC	GRCh37	9	93650898	93650898	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	75	520	0	ENST00000375746.1:c.1824C>A	p.Cys608Ter	p.C608*	ENST00000375746	NM_001174167.1	608	tgC/tgA																																																																															
ARAF	369	MSKCC	GRCh37	X	47426121	47426122	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	1066	792	2	ENST00000377045.4:c.641_642delinsTT	p.Ser214Phe	p.S214F	ENST00000377045	NM_001654.4	214	tCC/tTT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410712	63410712	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	110	663	0	ENST00000330258.3:c.2455G>C	p.Glu819Gln	p.E819Q	ENST00000330258	NM_152424.3	819	Gaa/Caa																																																																															
BCL2	596	MSKCC	GRCh37	18	60985571	60985571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	45	337	1	ENST00000333681.4:c.329G>A	p.Arg110His	p.R110H	ENST00000333681		110	cGc/cAc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227784	53227784	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	93	601	0	ENST00000375401.3:c.2404del	p.Arg802ValfsTer14	p.R802Vfs*14	ENST00000375401	NM_004187.3	802	Cgt/gt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023501	27023501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	89	477	0	ENST00000324856.7:c.607C>T	p.His203Tyr	p.H203Y	ENST00000324856	NM_006015.4	203	Cac/Tac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913878	32913878	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	69	484	0	ENST00000380152.3:c.5386G>C	p.Asp1796His	p.D1796H	ENST00000380152		1796	Gat/Cat																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841123	15841124	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	81	522	0	ENST00000307771.7:c.1212dupG	p.Lys405GlufsTer23	p.K405Efs*23	ENST00000307771	NM_005089.3	403	agg/aGgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026003-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			618	22	364	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039610	47039610	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0026003-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			657	36	277	0	ENST00000329236.7:c.829-1G>A		p.X277_splice	ENST00000329236	NM_001204466.1	277																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602698	10602698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026003-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	102	469	0	ENST00000171111.5:c.880G>T	p.Asp294Tyr	p.D294Y	ENST00000171111	NM_203500.1	294	Gac/Tac																																																																															
STK11	6794	MSKCC	GRCh37	19	1221962	1221962	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026003-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			928	70	367	2	ENST00000326873.7:c.877del	p.Glu293AsnfsTer43	p.E293Nfs*43	ENST00000326873	NM_000455.4	293	Gaa/aa																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538775	23538775	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026003-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			511	35	232	0	ENST00000380871.4:c.664T>A	p.Tyr222Asn	p.Y222N	ENST00000380871	NM_006167.3	222	Tac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	118	461	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0026165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	211	561	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0026165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	169	315	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27088658	27088659	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	119	574	0	ENST00000324856.7:c.2272dup	p.Gln758ProfsTer59	p.Q758Pfs*59	ENST00000324856	NM_006015.4	756	aac/aaCc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603080	48603080	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	144	426	1	ENST00000342988.3:c.1381C>T	p.Gln461Ter	p.Q461*	ENST00000342988	NM_005359.5	461	Cag/Tag																																																																															
FANCC	2176	MSKCC	GRCh37	9	97869512	97869512	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	133	459	0	ENST00000289081.3:c.1369T>C	p.Ser457Pro	p.S457P	ENST00000289081	NM_000136.2	457	Tcc/Ccc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0027197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	89	635	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
AR	367	MSKCC	GRCh37	X	66931247	66931247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	25	215	0	ENST00000374690.3:c.1889G>A	p.Arg630Gln	p.R630Q	ENST00000374690	NM_000044.3	630	cGg/cAg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39567798	39567798	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	40	434	0	ENST00000262039.4:c.554G>C	p.Gly185Ala	p.G185A	ENST00000262039	NM_002647.2	185	gGa/gCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952088	+	missense_variant	Missense_Mutation	ONP	ATCA	ATCA	GTCG			P-0027550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	87	307	0	ENST00000263967.3:c.3140_3143delinsGTCG	p.His1047_His1048delinsArgArg	p.H1047_H1048delinsRR	ENST00000263967	NM_006218.2	1047	cATCAt/cGTCGt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11300383	11300383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	148	424	0	ENST00000361445.4:c.1763C>T	p.Thr588Met	p.T588M	ENST00000361445	NM_004958.3	588	aCg/aTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11300386	11300386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	153	416	0	ENST00000361445.4:c.1760G>A	p.Arg587Gln	p.R587Q	ENST00000361445	NM_004958.3	587	cGa/cAa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261683	16261683	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149575630		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	203	639	0	ENST00000375759.3:c.8948C>T	p.Thr2983Met	p.T2983M	ENST00000375759	NM_015001.2	2983	aCg/aTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106930	27106930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	161	551	0	ENST00000324856.7:c.6541G>T	p.Ala2181Ser	p.A2181S	ENST00000324856	NM_006015.4	2181	Gca/Tca																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739353	46739353	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	144	485	0	ENST00000371975.4:c.1544A>G	p.Lys515Arg	p.K515R	ENST00000371975	NM_003579.3	515	aAa/aGa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	145	497	3	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72058499	72058499	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	132	343	2	ENST00000357731.5:c.940+1G>A		p.X314_splice	ENST00000357731	NM_173808.2	314																																																																																
FAM46C	54855	MSKCC	GRCh37	1	118166515	118166515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	118	444	0	ENST00000369448.3:c.1025C>T	p.Ala342Val	p.A342V	ENST00000369448	NM_017709.3	342	gCg/gTg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206653456	206653456	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	110	465	0	ENST00000367120.3:c.1340T>G	p.Met447Arg	p.M447R	ENST00000367120	NM_014002.3	447	aTg/aGg																																																																															
PARP1	142	MSKCC	GRCh37	1	226567661	226567661	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183533639		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	158	453	2	ENST00000366794.5:c.1505C>T	p.Ala502Val	p.A502V	ENST00000366794	NM_001618.3	502	gCg/gTg																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724631	112724631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	194	560	1	ENST00000369452.4:c.515G>A	p.Arg172Gln	p.R172Q	ENST00000369452	NM_007373.3	172	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114917780	114917780	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	130	370	0	ENST00000543371.1:c.1270G>A	p.Gly424Arg	p.G424R	ENST00000543371	NM_001198531.1	424	Gga/Aga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	255	471	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942195	71942195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	224	725	0	ENST00000298229.2:c.1459G>A	p.Gly487Arg	p.G487R	ENST00000298229	NM_001567.3	487	Ggg/Agg																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981861	101981863	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	192	722	0	ENST00000282441.5:c.286_288del	p.Phe96del	p.F96del	ENST00000282441	NM_001130145.2	94	tcCTTc/tcc																																																																															
ATM	472	MSKCC	GRCh37	11	108235944	108235944	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	145	442	0	ENST00000278616.4:c.8986A>G	p.Ser2996Gly	p.S2996G	ENST00000278616	NM_000051.3	2996	Agt/Ggt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435202	18435202	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	120	387	0	ENST00000266497.5:c.192del	p.Phe64LeufsTer15	p.F64Lfs*15	ENST00000266497		63	Ttt/tt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434384	49434384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	209	758	1	ENST00000301067.7:c.7169C>T	p.Pro2390Leu	p.P2390L	ENST00000301067	NM_003482.3	2390	cCg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438529	49438529	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	46	645	0	ENST00000301067.7:c.4961A>G	p.Glu1654Gly	p.E1654G	ENST00000301067	NM_003482.3	1654	gAa/gGa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443787	49443787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	235	829	1	ENST00000301067.7:c.3584C>T	p.Thr1195Ile	p.T1195I	ENST00000301067	NM_003482.3	1195	aCa/aTa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481899	56481899	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	199	694	0	ENST00000267101.3:c.827C>A	p.Pro276His	p.P276H	ENST00000267101	NM_001982.3	276	cCc/cAc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489582	56489582	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56387488		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	138	465	0	ENST00000267101.3:c.2047C>T	p.Arg683Trp	p.R683W	ENST00000267101	NM_001982.3	683	Cgg/Tgg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	228	828	0	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	206	704	10	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28959121	28959121	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137937570		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	235	383	0	ENST00000282397.4:c.2017G>A	p.Ala673Thr	p.A673T	ENST00000282397	NM_002019.4	673	Gcc/Acc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911359	32911359	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	359	553	0	ENST00000380152.3:c.2867A>G	p.Lys956Arg	p.K956R	ENST00000380152		956	aAa/aGa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913965	32913965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	352	621	0	ENST00000380152.3:c.5473G>A	p.Ala1825Thr	p.A1825T	ENST00000380152		1825	Gca/Aca																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240069	41240069	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	12	30	0	ENST00000379561.5:c.281T>C	p.Val94Ala	p.V94A	ENST00000379561	NM_002015.3	94	gTg/gCg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436506	110436506	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1225	75	782	1	ENST00000375856.3:c.1895A>G	p.Tyr632Cys	p.Y632C	ENST00000375856	NM_003749.2	632	tAc/tGc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30102151	30102151	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	104	475	0	ENST00000331968.5:c.1316G>A	p.Arg439Gln	p.R439Q	ENST00000331968	NM_002742.2	439	cGg/cAg																																																																															
MGA	23269	MSKCC	GRCh37	15	41962080	41962080	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	143	462	0	ENST00000219905.7:c.988C>T	p.Arg330Ter	p.R330*	ENST00000219905	NM_001164273.1	330	Cga/Tga																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	214	551	1	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43707837	43707837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	224	810	1	ENST00000382044.4:c.5044C>T	p.Arg1682Trp	p.R1682W	ENST00000382044	NM_001141980.1	1682	Cgg/Tgg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749148	43749148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	244	791	0	ENST00000382044.4:c.1658C>T	p.Thr553Met	p.T553M	ENST00000382044	NM_001141980.1	553	aCg/aTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88690572	88690572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	147	509	0	ENST00000360948.2:c.458G>A	p.Arg153Gln	p.R153Q	ENST00000360948	NM_001012338.2	153	cGg/cAg																																																																															
BLM	641	MSKCC	GRCh37	15	91310208	91310208	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs747341586		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	154	417	1	ENST00000355112.3:c.2268del	p.Asp757ThrfsTer4	p.D757Tfs*4	ENST00000355112	NM_000057.2	754	tcA/tc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223325	2223325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	205	798	1	ENST00000326181.6:c.937G>A	p.Ala313Thr	p.A313T	ENST00000326181	NM_032271.2	313	Gcc/Acc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23632774	23632774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	131	524	1	ENST00000261584.4:c.3022C>T	p.Pro1008Ser	p.P1008S	ENST00000261584	NM_024675.3	1008	Ccc/Tcc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783665	50783665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	185	620	0	ENST00000398568.2:c.56G>A	p.Arg19Gln	p.R19Q	ENST00000398568	NM_001042412.1	19	cGg/cAg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56855488	56855488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	101	373	0	ENST00000308159.5:c.637G>A	p.Ala213Thr	p.A213T	ENST00000308159	NM_014669.4	213	Gca/Aca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821875	72821875	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	106	399	1	ENST00000268489.5:c.10300del	p.Leu3434SerfsTer51	p.L3434Sfs*51	ENST00000268489	NM_006885.3	3434	Ctc/tc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822480	72822480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	209	816	4	ENST00000268489.5:c.9695G>A	p.Arg3232His	p.R3232H	ENST00000268489	NM_006885.3	3232	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923807	72923807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	148	582	0	ENST00000268489.5:c.3271G>A	p.Val1091Ile	p.V1091I	ENST00000268489	NM_006885.3	1091	Gtt/Att																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350121	89350122	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	214	740	0	ENST00000301030.4:c.2828_2829del	p.Glu943ValfsTer74	p.E943Vfs*74	ENST00000301030	NM_001256183.1	943	gAG/g																																																																															
FANCA	2175	MSKCC	GRCh37	16	89831345	89831346	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	195	646	5	ENST00000389301.3:c.2730_2731del	p.Trp911AspfsTer31	p.W911Dfs*31	ENST00000389301	NM_000135.2	910	ctCTgg/ctgg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217286	7217286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	182	611	0	ENST00000380728.2:c.419G>A	p.Arg140His	p.R140H	ENST00000380728		140	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs483352697		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	244	724	0	ENST00000269305.4:c.587G>A	p.Arg196Gln	p.R196Q	ENST00000269305	NM_001126112.2	196	cGa/cAa																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7982817	7982817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	212	773	3	ENST00000319144.4:c.968G>A	p.Gly323Asp	p.G323D	ENST00000319144	NM_001139.2	323	gGc/gAc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968279	15968279	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	97	353	0	ENST00000268712.3:c.5006del	p.Gly1669GlufsTer93	p.G1669Efs*93	ENST00000268712	NM_006311.3	1669	gGa/ga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618380	37618380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	110	442	0	ENST00000447079.4:c.56G>A	p.Gly19Glu	p.G19E	ENST00000447079	NM_015083.1	19	gGa/gAa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881426	37881426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	219	689	0	ENST00000269571.5:c.2618A>G	p.Asp873Gly	p.D873G	ENST00000269571		873	gAc/gGc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37884218	37884218	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	180	606	0	ENST00000269571.5:c.3694delG	p.Ala1232LeufsTer70	p.A1232Lfs*70	ENST00000269571		1230	cGg/cg																																																																															
RARA	5914	MSKCC	GRCh37	17	38510589	38510589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	181	634	0	ENST00000254066.5:c.843G>T	p.Gln281His	p.Q281H	ENST00000254066	NM_000964.3	281	caG/caT																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	119	634	0	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
MSI2	124540	MSKCC	GRCh37	17	55693388	55693388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	138	702	0	ENST00000284073.2:c.595C>T	p.Arg199Trp	p.R199W	ENST00000284073	NM_138962.2	199	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439912	56439912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	203	639	0	ENST00000407977.2:c.680G>A	p.Ser227Asn	p.S227N	ENST00000407977		227	aGc/aAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448280	56448280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	42	584	1	ENST00000407977.2:c.367G>A	p.Ala123Thr	p.A123T	ENST00000407977		123	Gct/Act																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770008	56770008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	108	388	0	ENST00000337432.4:c.4C>T	p.Arg2Cys	p.R2C	ENST00000337432	NM_058216.2	2	Cgc/Tgc																																																																															
CD79B	974	MSKCC	GRCh37	17	62007656	62007656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	165	533	1	ENST00000392795.3:c.211G>A	p.Ala71Thr	p.A71T	ENST00000392795	NM_001039933.1	71	Gcc/Acc																																																																															
BCL2	596	MSKCC	GRCh37	18	60985400	60985400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	194	632	3	ENST00000333681.4:c.500C>T	p.Ser167Leu	p.S167L	ENST00000333681		167	tCg/tTg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615691	1615691	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141432924		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	186	750	1	ENST00000344749.5:c.1580G>A	p.Arg527Gln	p.R527Q	ENST00000344749	NM_001136139.2	527	cGg/cAg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226767	2226767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	163	546	0	ENST00000398665.3:c.4247G>A	p.Arg1416His	p.R1416H	ENST00000398665	NM_032482.2	1416	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214592	5214592	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369295620		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	187	676	0	ENST00000357368.4:c.4474C>T	p.Arg1492Trp	p.R1492W	ENST00000357368	NM_002850.3	1492	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134269	11134269	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	205	645	0	ENST00000344626.4:c.2935C>T	p.Arg979Ter	p.R979*	ENST00000344626	NM_003072.3	979	Cga/Tga																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626865	14626865	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	243	718	0	ENST00000254322.2:c.910del	p.Leu304SerfsTer17	p.L304Sfs*17	ENST00000254322	NM_006145.1	304	Ctc/tc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311604	15311605	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	11	128	0	ENST00000263388.2:c.112dup	p.Ala38GlyfsTer37	p.A38Gfs*37	ENST00000263388	NM_000435.2	38	gct/gGct																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965830	18965830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	166	575	0	ENST00000262803.5:c.1408G>A	p.Asp470Asn	p.D470N	ENST00000262803	NM_002911.3	470	Gac/Aac																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257366	19257366	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	229	721	2	ENST00000162023.5:c.767delC	p.Pro256GlnfsTer?	p.P256Qfs*?	ENST00000162023		256	cCa/ca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210893	36210893	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	190	810	4	ENST00000222270.7:c.649del	p.Arg217GlyfsTer22	p.R217Gfs*22	ENST00000222270	NM_014727.1	215	aCc/ac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213516	36213516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	231	933	2	ENST00000222270.7:c.2618G>A	p.Arg873His	p.R873H	ENST00000222270	NM_014727.1	873	cGt/cAt																																																																															
ERF	2077	MSKCC	GRCh37	19	42752723	42752723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	198	741	1	ENST00000222329.4:c.1541G>A	p.Arg514His	p.R514H	ENST00000222329	NM_006494.2	514	cGt/cAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42798840	42798840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	255	772	1	ENST00000575354.2:c.4412G>A	p.Arg1471Gln	p.R1471Q	ENST00000575354	NM_015125.3	1471	cGg/cAg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	78	658	4	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
POLD1	5424	MSKCC	GRCh37	19	50919882	50919882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	195	663	0	ENST00000440232.2:c.2969G>A	p.Arg990His	p.R990H	ENST00000440232	NM_002691.3	990	cGc/cAc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52719794	52719794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	175	607	0	ENST00000322088.6:c.1006G>A	p.Asp336Asn	p.D336N	ENST00000322088	NM_014225.5	336	Gat/Aat																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085894	16085894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	177	601	0	ENST00000281043.3:c.1070G>A	p.Arg357His	p.R357H	ENST00000281043	NM_005378.4	357	cGt/cAt																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46596970	46596970	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	40	431	0	ENST00000263734.3:c.784A>G	p.Thr262Ala	p.T262A	ENST00000263734	NM_001430.4	262	Aca/Gca																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702384	47702385	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	118	367	0	ENST00000233146.2:c.1983dup	p.Gln662ThrfsTer14	p.Q662Tfs*14	ENST00000233146	NM_000251.2	660	-/A																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96920573	96920573	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	130	386	0	ENST00000258439.3:c.407C>T	p.Thr136Met	p.T136M	ENST00000258439	NM_001193304.2	136	aCg/aTg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376085	225376085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	141	495	1	ENST00000264414.4:c.869del	p.Asn290MetfsTer21	p.N290Mfs*21	ENST00000264414	NM_003590.4	290	aAt/at																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661338	227661338	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	58	689	0	ENST00000305123.5:c.2117A>G	p.His706Arg	p.H706R	ENST00000305123	NM_005544.2	706	cAc/cGc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661604	227661605	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	190	635	0	ENST00000305123.5:c.1850dup	p.Gly618ArgfsTer57	p.G618Rfs*57	ENST00000305123	NM_005544.2	617	cca/ccCa																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	198	757	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024381	31024381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	259	632	1	ENST00000375687.4:c.3866G>A	p.Arg1289Gln	p.R1289Q	ENST00000375687	NM_015338.5	1289	cGg/cAg																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945543	54945543	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	245	834	1	ENST00000312783.6:c.1027C>T	p.Arg343Trp	p.R343W	ENST00000312783	NM_198436.1	343	Cgg/Tgg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	17	486	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
RAF1	5894	MSKCC	GRCh37	3	12629093	12629093	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	124	375	0	ENST00000251849.4:c.1414A>C	p.Asn472His	p.N472H	ENST00000251849	NM_002880.3	472	Aac/Cac																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165283	47165283	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	37	422	0	ENST00000409792.3:c.843delA	p.Glu282LysfsTer19	p.E282Kfs*19	ENST00000409792	NM_014159.6	281	aaA/aa																																																																															
MST1	4485	MSKCC	GRCh37	3	49723510	49723510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	30	72	0	ENST00000449682.2:c.1132G>A	p.Asp378Asn	p.D378N	ENST00000449682	NM_020998.3	378	Gac/Aac																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437456	52437456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	54	610	0	ENST00000460680.1:c.1705G>A	p.Val569Met	p.V569M	ENST00000460680	NM_004656.3	569	Gtg/Atg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442054	52442054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	181	627	0	ENST00000460680.1:c.295G>A	p.Val99Met	p.V99M	ENST00000460680	NM_004656.3	99	Gtg/Atg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204842	128204842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	77	797	1	ENST00000341105.2:c.599del	p.Gly200ValfsTer18	p.G200Vfs*18	ENST00000341105	NM_032638.4	200	gGt/gt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880957	134880957	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770406411		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	161	539	0	ENST00000398015.3:c.1520G>A	p.Arg507His	p.R507H	ENST00000398015	NM_004441.4	507	cGt/cAt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413709	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs199713806		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	184	513	0	ENST00000289153.2:c.1811G>C	p.Arg604Pro	p.R604P	ENST00000289153	NM_006219.2	604	cGg/cCg																																																																															
ATR	545	MSKCC	GRCh37	3	142261555	142261555	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	153	490	3	ENST00000350721.4:c.3402del	p.Phe1134LeufsTer6	p.F1134Lfs*6	ENST00000350721	NM_001184.3	1134	ttT/tt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	136	466	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185183614	185183614	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	145	442	0	ENST00000265026.3:c.1468A>G	p.Met490Val	p.M490V	ENST00000265026	NM_004721.4	490	Atg/Gtg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806180	1806181	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775260779		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	64	785	1	ENST00000260795.2:c.1206dup	p.Lys403GlnfsTer93	p.K403Qfs*93	ENST00000260795		400	agc/agCc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535427	66535427	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1472517358		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	129	346	0	ENST00000273854.3:c.34C>T	p.Arg12Trp	p.R12W	ENST00000273854	NM_004439.5	12	Cgg/Tgg																																																																															
TET2	54790	MSKCC	GRCh37	4	106156204	106156204	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150072691		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	126	403	0	ENST00000380013.4:c.1105C>T	p.Arg369Trp	p.R369W	ENST00000380013	NM_001127208.2	369	Cgg/Tgg																																																																															
TERT	7015	MSKCC	GRCh37	5	1293440	1293440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	171	592	0	ENST00000310581.5:c.1561C>T	p.Arg521Cys	p.R521C	ENST00000310581	NM_198253.2	521	Cgc/Tgc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38960057	38960057	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	25	277	0	ENST00000357387.3:c.1875T>A	p.Asp625Glu	p.D625E	ENST00000357387	NM_152756.3	625	gaT/gaA																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155540	56155540	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	123	401	0	ENST00000399503.3:c.634-2A>G		p.X212_splice	ENST00000399503	NM_005921.1	212																																																																																
PLK2	10769	MSKCC	GRCh37	5	57753012	57753013	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	128	428	0	ENST00000274289.3:c.1003_1004del	p.Leu335AlafsTer11	p.L335Afs*11	ENST00000274289	NM_006622.3	335	TTg/g																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	257	649	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112170747	112170747	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	181	558	2	ENST00000257430.4:c.1847delT	p.Leu616TrpfsTer14	p.L616Wfs*14	ENST00000257430	NM_000038.5	615	Ttt/tt																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	86	383	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
RAD50	10111	MSKCC	GRCh37	5	131977896	131977896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	164	428	1	ENST00000265335.6:c.3779G>A	p.Arg1260His	p.R1260H	ENST00000265335		1260	cGt/cAt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520184	176520184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	74	814	1	ENST00000292408.4:c.1103C>T	p.Thr368Met	p.T368M	ENST00000292408	NM_213647.1	368	aCg/aTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	46	339	0	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	199	649	4	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056503	26056503	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs141424312		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	75	259	0	ENST00000343677.2:c.154A>G	p.Lys52Glu	p.K52E	ENST00000343677	NM_005319.3	52	Aaa/Gaa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163246	32163246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1179	81	957	0	ENST00000375023.3:c.5980C>T	p.Pro1994Ser	p.P1994S	ENST00000375023	NM_004557.3	1994	Ccc/Tcc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32191695	32191695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	150	682	0	ENST00000375023.3:c.11del	p.Pro4LeufsTer39	p.P4Lfs*39	ENST00000375023	NM_004557.3	4	cCt/ct																																																																															
ROS1	6098	MSKCC	GRCh37	6	117679148	117679148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	42	386	0	ENST00000368508.3:c.3673G>A	p.Asp1225Asn	p.D1225N	ENST00000368508	NM_002944.2	1225	Gat/Aat																																																																															
ROS1	6098	MSKCC	GRCh37	6	117714467	117714468	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	37	364	0	ENST00000368508.3:c.1181dup	p.Leu394PhefsTer16	p.L394Ffs*16	ENST00000368508	NM_002944.2	394	tta/ttTa																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997780	149997780	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148506316		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	191	520	0	ENST00000253339.5:c.2687G>A	p.Arg896Gln	p.R896Q	ENST00000253339		896	cGg/cAg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129241	152129241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	210	678	1	ENST00000206249.3:c.194C>T	p.Ala65Val	p.A65V	ENST00000206249	NM_000125.3	65	gCg/gTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962930	2962930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	474	885	1	ENST00000396946.4:c.1978C>T	p.Arg660Trp	p.R660W	ENST00000396946	NM_032415.4	660	Cgg/Tgg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978405	2978405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	460	723	2	ENST00000396946.4:c.925C>T	p.Arg309Cys	p.R309C	ENST00000396946	NM_032415.4	309	Cgc/Tgc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13949275	13949275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	27	373	0	ENST00000405192.2:c.853G>A	p.Val285Ile	p.V285I	ENST00000405192	NM_001163147.1	285	Gtc/Atc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	203	334	1	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55214316	55214316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	217	609	0	ENST00000275493.2:c.442G>A	p.Val148Met	p.V148M	ENST00000275493	NM_005228.3	148	Gtg/Atg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151917611	151917611	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	318	629	0	ENST00000262189.6:c.3709C>T	p.Arg1237Ter	p.R1237*	ENST00000262189	NM_170606.2	1237	Cga/Tga																																																																															
RAD21	5885	MSKCC	GRCh37	8	117859878	117859878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	119	316	0	ENST00000297338.2:c.1757G>A	p.Arg586Gln	p.R586Q	ENST00000297338	NM_006265.2	586	cGa/cAa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740573	145740573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	157	720	0	ENST00000428558.2:c.1444C>T	p.Arg482Cys	p.R482C	ENST00000428558	NM_004260.3	482	Cgc/Tgc																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5549526	5549526	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	250	833	1	ENST00000397747.3:c.557del	p.Pro186LeufsTer14	p.P186Lfs*14	ENST00000397747	NM_025239.3	185	Ccc/cc																																																																															
TEK	7010	MSKCC	GRCh37	9	27158026	27158026	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	203	673	1	ENST00000380036.4:c.255del	p.Val86LeufsTer31	p.V86Lfs*31	ENST00000380036	NM_000459.3	84	Aaa/aa																																																																															
TEK	7010	MSKCC	GRCh37	9	27169625	27169625	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	174	609	0	ENST00000380036.4:c.626G>A	p.Arg209Gln	p.R209Q	ENST00000380036	NM_000459.3	209	cGg/cAg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	147	597	3	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98215833	98215833	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147025073		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	183	616	1	ENST00000331920.6:c.3376G>A	p.Val1126Ile	p.V1126I	ENST00000331920	NM_000264.3	1126	Gtc/Atc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900239	101900239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	140	388	0	ENST00000374994.4:c.673C>T	p.Arg225Trp	p.R225W	ENST00000374994	NM_004612.2	225	Cgg/Tgg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412735	139412735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	46	641	0	ENST00000277541.6:c.1109G>A	p.Cys370Tyr	p.C370Y	ENST00000277541	NM_017617.3	370	tGc/tAc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	203	643	4	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039312	47039312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	95	388	0	ENST00000329236.7:c.704C>A	p.Thr235Asn	p.T235N	ENST00000329236	NM_001204466.1	235	aCc/aAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410960	63410960	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	193	345	0	ENST00000330258.3:c.2207del	p.Asn736IlefsTer32	p.N736Ifs*32	ENST00000330258	NM_152424.3	736	aAt/at																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413070	63413070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	249	351	1	ENST00000330258.3:c.97G>A	p.Ala33Thr	p.A33T	ENST00000330258	NM_152424.3	33	Gca/Aca																																																																															
AR	367	MSKCC	GRCh37	X	66765820	66765820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	295	426	0	ENST00000374690.3:c.832G>A	p.Ala278Thr	p.A278T	ENST00000374690	NM_000044.3	278	Gct/Act																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279861	46279866	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	67	596	0	ENST00000371998.3:c.3810_3815delACAGCA	p.Gln1275_Gln1276del	p.Q1275_Q1276del	ENST00000371998		1263	CAGCAA/-																																																																															
PARP1	142	MSKCC	GRCh37	1	226570840	226570841	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	C			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	156	543	0	ENST00000366794.5:c.1055_1056delinsG	p.Lys352SerfsTer29	p.K352Sfs*29	ENST00000366794	NM_001618.3	352	aAA/aG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0028511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	398	595	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117665237	117665237	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0028511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	97	279	0	ENST00000368508.3:c.4510A>T	p.Lys1504Ter	p.K1504*	ENST00000368508	NM_002944.2	1504	Aaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	46	525	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0028512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	45	633	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542810	187542810	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	22	511	0	ENST00000441802.2:c.4930A>G	p.Ser1644Gly	p.S1644G	ENST00000441802	NM_005245.3	1644	Agt/Ggt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0028512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	17	511	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175857	24175859	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0028512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	63	585	0	ENST00000263121.7:c.1091_1093del	p.Lys364del	p.K364del	ENST00000263121	NM_003073.3	362	gAGAag/gag																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400905	72400905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	13	490	0	ENST00000357731.5:c.266C>A	p.Pro89His	p.P89H	ENST00000357731	NM_173808.2	89	cCt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0028512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	27	786	0	ENST00000269305.4:c.377A>C	p.Tyr126Ser	p.Y126S	ENST00000269305	NM_001126112.2	126	tAc/tCc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45796215	45796215	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0028512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	23	624	0	ENST00000372115.3:c.1449T>G	p.Tyr483Ter	p.Y483*	ENST00000372115	NM_001048171.1	483	taT/taG																																																																															
CD276	80381	MSKCC	GRCh37	15	73994738	73994738	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	33	830	0	ENST00000318443.5:c.222G>C	p.Gln74His	p.Q74H	ENST00000318443	NM_001024736.1	74	caG/caC																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827504	72827504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	41	665	0	ENST00000268489.5:c.9077G>T	p.Cys3026Phe	p.C3026F	ENST00000268489	NM_006885.3	3026	tGc/tTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218440	36218440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	29	495	0	ENST00000222270.7:c.4219G>C	p.Gly1407Arg	p.G1407R	ENST00000222270	NM_014727.1	1407	Ggg/Cgg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71096153	71096153	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	72	426	0	ENST00000318789.4:c.604C>G	p.Gln202Glu	p.Q202E	ENST00000318789	NM_032682.5	202	Caa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0028515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	819	603	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857692	9857692	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1389208302		P-0028515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	153	401	0	ENST00000330684.3:c.3709G>A	p.Asp1237Asn	p.D1237N	ENST00000330684	NM_001134407.1	1237	Gat/Aat																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060782	38060784	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0028515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1399	369	980	0	ENST00000250448.2:c.1205_1207del	p.Ile402del	p.I402del	ENST00000250448	NM_004496.3	402	aTCAac/aac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692892	89692892	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	472	403	0	ENST00000371953.3:c.376G>C	p.Ala126Pro	p.A126P	ENST00000371953	NM_000314.4	126	Gct/Cct																																																																															
MSH3	4437	MSKCC	GRCh37	5	80024744	80024744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	217	597	0	ENST00000265081.6:c.1528C>T	p.Leu510Phe	p.L510F	ENST00000265081	NM_002439.4	510	Ctc/Ttc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931682	39931682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1275	259	713	1	ENST00000378444.4:c.2917G>A	p.Val973Met	p.V973M	ENST00000378444	NM_001123385.1	973	Gtg/Atg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176054986	176054986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	63	623	0	ENST00000367669.3:c.1067G>T	p.Arg356Ile	p.R356I	ENST00000367669	NM_022457.5	356	aGa/aTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0028520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	103	493	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
MGA	23269	MSKCC	GRCh37	15	42002898	42002898	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	25	334	0	ENST00000219905.7:c.2435C>A	p.Ser812Ter	p.S812*	ENST00000219905	NM_001164273.1	812	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	73	620	0	ENST00000269305.4:c.470T>A	p.Val157Asp	p.V157D	ENST00000269305	NM_001126112.2	157	gTc/gAc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1625652	1625652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	42	657	0	ENST00000344749.5:c.422C>T	p.Ser141Leu	p.S141L	ENST00000344749	NM_001136139.2	141	tCg/tTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290061	15290061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	60	690	0	ENST00000263388.2:c.3493G>A	p.Gly1165Ser	p.G1165S	ENST00000263388	NM_000435.2	1165	Ggc/Agc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212483976	212483976	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	38	480	0	ENST00000342788.4:c.2227A>T	p.Thr743Ser	p.T743S	ENST00000342788	NM_005235.2	743	Act/Tct																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968311	134968311	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	94	537	1	ENST00000398015.3:c.2824C>A	p.Leu942Met	p.L942M	ENST00000398015	NM_004441.4	942	Ctg/Atg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196847	138196847	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	47	352	0	ENST00000237289.4:c.509A>G	p.Asn170Ser	p.N170S	ENST00000237289	NM_001270507.1	170	aAt/aGt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039709	47039709	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0028520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	23	250	1	ENST00000329236.7:c.926+1G>T		p.X309_splice	ENST00000329236	NM_001204466.1	309																																																																																
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0028525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	14	239	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0028525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	42	384	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0028525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	15	385	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0028525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	61	443	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	69	242	0	ENST00000257430.4:c.4067C>A	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tAa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953040	2953040	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141751925		P-0028525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	63	521	2	ENST00000396946.4:c.2900G>A	p.Arg967His	p.R967H	ENST00000396946	NM_032415.4	967	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244163	5244163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	39	466	2	ENST00000357368.4:c.1319C>T	p.Ala440Val	p.A440V	ENST00000357368	NM_002850.3	440	gCg/gTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462971	120462971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	55	407	0	ENST00000256646.2:c.5360G>A	p.Arg1787Gln	p.R1787Q	ENST00000256646	NM_024408.3	1787	cGg/cAg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243777010	243777010	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200428825		P-0028531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	90	496	0	ENST00000263826.5:c.659G>A	p.Arg220His	p.R220H	ENST00000263826	NM_005465.4	220	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0028531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	90	538	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0028531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	91	478	0	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
ERRFI1	54206	MSKCC	GRCh37	1	8075564	8075564	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	93	450	0	ENST00000377482.5:c.116A>T	p.Glu39Val	p.E39V	ENST00000377482	NM_018948.3	39	gAg/gTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603041	48603041	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	71	369	0	ENST00000342988.3:c.1342del	p.Gln448SerfsTer28	p.Q448Sfs*28	ENST00000342988	NM_005359.5	448	Cag/ag																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459741	149459743	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0028531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	82	568	0	ENST00000286301.3:c.464_466del	p.Ser155del	p.S155del	ENST00000286301	NM_005211.3	155	tCCTtc/ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0028537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	16	656	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252994	36252995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	75	401	0	ENST00000300305.3:c.367dupG	p.Asp123GlyfsTer15	p.D123Gfs*15	ENST00000300305		123	gat/gGat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168811	56168811	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	89	306	0	ENST00000399503.3:c.1667del	p.Leu556Ter	p.L556*	ENST00000399503	NM_005921.1	555	gaT/ga																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259258	36259259	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	122	582	0	ENST00000300305.3:c.232dup	p.Met78AsnfsTer60	p.M78Nfs*60	ENST00000300305		78	atg/aAtg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168490	56168491	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	68	124	0	ENST00000399503.3:c.1447dupA	p.Arg483LysfsTer10	p.R483Kfs*10	ENST00000399503	NM_005921.1	482	-/A																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112771545	112771545	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	115	467	1	ENST00000369452.4:c.1718A>T	p.Lys573Met	p.K573M	ENST00000369452	NM_007373.3	573	aAg/aTg																																																																															
ALK	238	MSKCC	GRCh37	2	29443679	29443679	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	149	619	0	ENST00000389048.3:c.3538G>C	p.Val1180Leu	p.V1180L	ENST00000389048	NM_004304.4	1180	Gtt/Ctt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0028543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	39	467	0	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	132	411	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0028544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	237	551	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175153	112175153	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	186	228	0	ENST00000257430.4:c.3862G>T	p.Gly1288Ter	p.G1288*	ENST00000257430	NM_000038.5	1288	Gga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs878854073		P-0028544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	164	468	0	ENST00000269305.4:c.673-1G>A		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
CARD11	84433	MSKCC	GRCh37	7	2984085	2984085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	145	407	0	ENST00000396946.4:c.445C>T	p.Arg149Cys	p.R149C	ENST00000396946	NM_032415.4	149	Cgc/Tgc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71050193	71050195	+	frameshift_variant	Frame_Shift_Del	DEL	TGC	TGC	GA			P-0028544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	127	299	0	ENST00000318789.4:c.990_992delinsTC	p.Glu330AspfsTer22	p.E330Dfs*22	ENST00000318789	NM_032682.5	330	gaGCAt/gaTCt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526886	31526886	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	267	741	0	ENST00000344624.3:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000344624		52	Caa/Taa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864459	162864459	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	180	464	0	ENST00000366898.1:c.54T>A	p.Asp18Glu	p.D18E	ENST00000366898	NM_004562.2	18	gaT/gaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578445	7578445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	306	879	1	ENST00000269305.4:c.485T>G	p.Ile162Ser	p.I162S	ENST00000269305	NM_001126112.2	162	aTc/aGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	1061	432	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937184	36937184	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	173	349	1	ENST00000361632.4:c.1135G>T	p.Gly379Cys	p.G379C	ENST00000361632		379	Ggc/Tgc																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439842	51439842	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	97	309	0	ENST00000262662.1:c.407A>G	p.Lys136Arg	p.K136R	ENST00000262662		136	aAg/aGg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163317568	163317568	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	150	347	0	ENST00000271452.3:c.964G>T	p.Asp322Tyr	p.D322Y	ENST00000271452	NM_145697.2	322	Gac/Tac																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40451799	40451799	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	304	385	0	ENST00000345506.4:c.581C>G	p.Pro194Arg	p.P194R	ENST00000345506	NM_003152.3	194	cCc/cGc																																																																															
INHA	3623	MSKCC	GRCh37	2	220439799	220439799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	301	274	1	ENST00000243786.2:c.652C>A	p.His218Asn	p.H218N	ENST00000243786	NM_002191.3	218	Cac/Aac																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747862	41747862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	125	312	1	ENST00000226382.2:c.907G>A	p.Gly303Ser	p.G303S	ENST00000226382	NM_003924.3	303	Ggt/Agt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44937732	44937732	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	243	454	0	ENST00000377967.4:c.2920G>T	p.Ala974Ser	p.A974S	ENST00000377967	NM_021140.2	974	Gct/Tct																																																																															
SPEN	23013	MSKCC	GRCh37	1	16198985	16199354	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGAGGTGGAGCTTGCAGTGAGCTGAGATTGTGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAGAAATGAGAGTAATGTAATAATGCGATACAGATATTTTCCCCAGAGAGAAAAACGTTAAGTGTAAAAGAGAGCCATTTAAAAAGTCATTTTGCAGGTCGTCCCTCCTACATACATAACGCAAATTGTCCAAAAAAAATCTAAAAACTCATTTTGGAAAATTATTGATATGCAGCAATAACGTTGACTTTATTTTTTCCAGATATGGCCGCGTGGAAAGTGTCAAAATTCTTCCCAAGAGGGGAT	CTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGAGGTGGAGCTTGCAGTGAGCTGAGATTGTGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAGAAATGAGAGTAATGTAATAATGCGATACAGATATTTTCCCCAGAGAGAAAAACGTTAAGTGTAAAAGAGAGCCATTTAAAAAGTCATTTTGCAGGTCGTCCCTCCTACATACATAACGCAAATTGTCCAAAAAAAATCTAAAAACTCATTTTGGAAAATTATTGATATGCAGCAATAACGTTGACTTTATTTTTTCCAGATATGGCCGCGTGGAAAGTGTCAAAATTCTTCCCAAGAGGGGAT	-			P-0028567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2	254	0	0	ENST00000375759.3:c.84-324_129del		p.X28_splice	ENST00000375759	NM_015001.2	28																																																																																
HIST3H3	8290	MSKCC	GRCh37	1	228612813	228612813	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	227	665	0	ENST00000366696.1:c.214A>C	p.Met72Leu	p.M72L	ENST00000366696	NM_003493.2	72	Atg/Ctg																																																																															
MGA	23269	MSKCC	GRCh37	15	42046765	42046765	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	48	599	0	ENST00000219905.7:c.7139C>T	p.Pro2380Leu	p.P2380L	ENST00000219905	NM_001164273.1	2380	cCg/cTg																																																																															
BARD1	580	MSKCC	GRCh37	2	215645284	215645284	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0028567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	115	435	0	ENST00000260947.4:c.1314G>C	p.Lys438Asn	p.K438N	ENST00000260947	NM_000465.2	438	aaG/aaC																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200748	128200748	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	638	689	0	ENST00000341105.2:c.1057C>A	p.Gln353Lys	p.Q353K	ENST00000341105	NM_032638.4	353	Cag/Aag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32185016	32185016	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	562	738	0	ENST00000375023.3:c.1652A>G	p.Asp551Gly	p.D551G	ENST00000375023	NM_004557.3	551	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578226	7578226	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1464727668		P-0028569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	273	598	1	ENST00000269305.4:c.623A>T	p.Asp208Val	p.D208V	ENST00000269305	NM_001126112.2	208	gAc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	250	537	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	115	457	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	348	646	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																															
BTK	695	MSKCC	GRCh37	X	100608923	100608923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	107	325	4	ENST00000308731.7:c.1685G>A	p.Arg562Gln	p.R562Q	ENST00000308731	NM_000061.2	562	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	58	239	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	111	488	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713427	40713427	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752787425		P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	53	611	4	ENST00000373198.4:c.4088G>A	p.Arg1363Gln	p.R1363Q	ENST00000373198	NM_133170.3	1363	cGg/cAg																																																																															
MYC	4609	MSKCC	GRCh37	8	128752960	128752960	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	149	515	0	ENST00000377970.2:c.1121A>G	p.His374Arg	p.H374R	ENST00000377970	NM_002467.4	374	cAc/cGc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	127	503	9	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123833	46123833	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	91	292	1	ENST00000334344.6:c.102delT	p.Phe34LeufsTer24	p.F34Lfs*24	ENST00000334344	NM_152641.2	33	ccT/cc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021232	31021232	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148964601		P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	146	555	2	ENST00000375687.4:c.1231C>T	p.Arg411Cys	p.R411C	ENST00000375687	NM_015338.5	411	Cgc/Tgc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206649544	206649544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	121	530	0	ENST00000367120.3:c.379C>T	p.Arg127Trp	p.R127W	ENST00000367120	NM_014002.3	127	Cgg/Tgg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982386	25982386	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	165	379	0	ENST00000435504.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000435504		302	Cga/Tga																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	302	687	4	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948208	71948209	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	57	774	1	ENST00000298229.2:c.2927dupC	p.Pro977ThrfsTer7	p.P977Tfs*7	ENST00000298229	NM_001567.3	974	gcc/gCcc																																																																															
ATR	545	MSKCC	GRCh37	3	142242899	142242899	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750252420		P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	180	601	0	ENST00000350721.4:c.4088C>T	p.Ala1363Val	p.A1363V	ENST00000350721	NM_001184.3	1363	gCg/gTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180050958	180050958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	181	742	0	ENST00000261937.6:c.1525G>A	p.Glu509Lys	p.E509K	ENST00000261937	NM_182925.4	509	Gag/Aag																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281344	49281344	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202077345		P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	409	799	2	ENST00000282018.3:c.391G>A	p.Val131Met	p.V131M	ENST00000282018	NM_020377.2	131	Gtg/Atg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117631343	117631343	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	104	429	0	ENST00000368508.3:c.6335del	p.Asn2112MetfsTer22	p.N2112Mfs*22	ENST00000368508	NM_002944.2	2112	aAt/at																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653803	89653803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	279	489	0	ENST00000371953.3:c.101C>T	p.Ala34Val	p.A34V	ENST00000371953	NM_000314.4	34	gCt/gTt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255919	16255919	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	162	516	0	ENST00000375759.3:c.3184A>C	p.Ser1062Arg	p.S1062R	ENST00000375759	NM_015001.2	1062	Agc/Cgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256591	16256591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	76	586	1	ENST00000375759.3:c.3856G>A	p.Gly1286Arg	p.G1286R	ENST00000375759	NM_015001.2	1286	Ggg/Agg																																																																															
RIT1	6016	MSKCC	GRCh37	1	155870250	155870251	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	149	659	0	ENST00000368323.3:c.588dup	p.Ser197IlefsTer2	p.S197Ifs*2	ENST00000368323	NM_006912.5	196	-/A																																																																															
CDC73	79577	MSKCC	GRCh37	1	193219001	193219001	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	77	337	0	ENST00000367435.3:c.1559G>C	p.Arg520Thr	p.R520T	ENST00000367435	NM_024529.4	520	aGg/aCg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982141	201982142	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	175	717	1	ENST00000359651.3:c.666_667dup	p.Asp223ValfsTer32	p.D223Vfs*32	ENST00000359651		222	act/acTGt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111855951	111855951	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	128	406	1	ENST00000341259.2:c.2T>C	p.Met1?	p.M1?	ENST00000341259	NM_005475.2	1	aTg/aCg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121437289	121437289	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	162	726	0	ENST00000257555.6:c.1627T>C	p.Phe543Leu	p.F543L	ENST00000257555		543	Ttc/Ctc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28913305	28913305	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	129	565	0	ENST00000282397.4:c.2488G>T	p.Gly830Cys	p.G830C	ENST00000282397	NM_002019.4	830	Ggc/Tgc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001372	29001372	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	104	456	0	ENST00000282397.4:c.1360T>C	p.Cys454Arg	p.C454R	ENST00000282397	NM_002019.4	454	Tgt/Cgt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41226539	41226539	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	109	458	0	ENST00000357654.3:c.4485-1G>T		p.X1495_splice	ENST00000357654	NM_007294.3	1495																																																																																
PIK3R2	5296	MSKCC	GRCh37	19	18266704	18266704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	156	538	1	ENST00000222254.8:c.15G>T	p.Glu5Asp	p.E5D	ENST00000222254	NM_005027.3	5	gaG/gaT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211568	36211568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	75	498	0	ENST00000222270.7:c.1319C>A	p.Pro440His	p.P440H	ENST00000222270	NM_014727.1	440	cCt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212249	36212251	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	241	620	1	ENST00000222270.7:c.2009_2011del	p.Pro670del	p.P670del	ENST00000222270	NM_014727.1	667	aCTCct/act																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224532	36224532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759167832		P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	242	865	0	ENST00000222270.7:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000222270	NM_014727.1	2332	Cgt/Tgt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248729	212248729	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs142119532		P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	44	386	0	ENST00000342788.4:c.3538C>A	p.Leu1180Ile	p.L1180I	ENST00000342788	NM_005235.2	1180	Ctt/Att																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30733069	30733069	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	110	470	0	ENST00000359013.4:c.1757G>T	p.Gly586Val	p.G586V	ENST00000359013	NM_001024847.2	586	gGc/gTc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72890204	72890204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	109	464	0	ENST00000325599.8:c.478C>T	p.Arg160Trp	p.R160W	ENST00000325599	NM_018130.2	160	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112151233	112151240	+	frameshift_variant	Frame_Shift_Del	DEL	GAGTTCTA	GAGTTCTA	-			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	131	477	0	ENST00000257430.4:c.877_884del	p.Ser293Ter	p.S293*	ENST00000257430	NM_000038.5	292	ttGAGTTCTAgt/ttgt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931411	131931411	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	131	436	0	ENST00000265335.6:c.2116C>T	p.Arg706Ter	p.R706*	ENST00000265335		706	Cga/Tga																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515273	149515273	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	120	567	0	ENST00000261799.4:c.209del	p.Pro70HisfsTer18	p.P70Hfs*18	ENST00000261799	NM_002609.3	70	cCa/ca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859884	151859884	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	84	342	0	ENST00000262189.6:c.10778A>G	p.Tyr3593Cys	p.Y3593C	ENST00000262189	NM_170606.2	3593	tAt/tGt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371677	55371677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	120	609	1	ENST00000297316.4:c.367C>T	p.Arg123Trp	p.R123W	ENST00000297316	NM_022454.3	123	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971109	21971109	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	80	303	0	ENST00000361570.3:c.415C>T	p.Arg139Ter	p.R139*	ENST00000361570	NM_058195.3	139	Cga/Tga																																																																															
ABL1	25	MSKCC	GRCh37	9	133760706	133760706	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	167	783	0	ENST00000318560.5:c.3029T>C	p.Val1010Ala	p.V1010A	ENST00000318560	NM_005157.4	1010	gTg/gCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0028577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	126	602	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920469	134920469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	41	696	0	ENST00000398015.3:c.2284G>A	p.Asp762Asn	p.D762N	ENST00000398015	NM_004441.4	762	Gac/Aac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0028577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	10	442	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264932	46264932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	56	577	0	ENST00000371998.3:c.1802G>A	p.Ser601Asn	p.S601N	ENST00000371998		601	aGc/aAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16242743	16242743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	123	639	1	ENST00000375759.3:c.1364G>A	p.Arg455His	p.R455H	ENST00000375759	NM_015001.2	455	cGc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259751	16259751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	125	548	2	ENST00000375759.3:c.7016G>A	p.Arg2339His	p.R2339H	ENST00000375759	NM_015001.2	2339	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023285	27023285	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	65	137	1	ENST00000324856.7:c.394del	p.Val132TrpfsTer100	p.V132Wfs*100	ENST00000324856	NM_006015.4	131	Ggg/gg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429978	78429978	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	118	482	2	ENST00000370768.2:c.901del	p.Ile301TyrfsTer22	p.I301Yfs*22	ENST00000370768	NM_003902.3	301	Ata/ta																																																																															
PARP1	142	MSKCC	GRCh37	1	226564855	226564855	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138228205		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	86	520	1	ENST00000366794.5:c.1895C>T	p.Thr632Met	p.T632M	ENST00000366794	NM_001618.3	632	aCg/aTg																																																																															
FH	2271	MSKCC	GRCh37	1	241680490	241680490	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139642944		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	113	487	0	ENST00000366560.3:c.259C>T	p.Arg87Cys	p.R87C	ENST00000366560	NM_000143.3	87	Cgc/Tgc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246091255	246091255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	98	560	0	ENST00000388985.4:c.680G>A	p.Arg227Gln	p.R227Q	ENST00000388985		227	cGa/cAa																																																																															
TET1	80312	MSKCC	GRCh37	10	70332841	70332841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	78	714	1	ENST00000373644.4:c.746G>A	p.Cys249Tyr	p.C249Y	ENST00000373644	NM_030625.2	249	tGt/tAt																																																																															
TET1	80312	MSKCC	GRCh37	10	70406360	70406360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	84	685	0	ENST00000373644.4:c.3874G>A	p.Ala1292Thr	p.A1292T	ENST00000373644	NM_030625.2	1292	Gcc/Acc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	90	473	8	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939260	71939260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	153	720	0	ENST00000298229.2:c.209G>A	p.Arg70His	p.R70H	ENST00000298229	NM_001567.3	70	cGc/cAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949102	71949102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	114	539	0	ENST00000298229.2:c.3569G>A	p.Gly1190Asp	p.G1190D	ENST00000298229	NM_001567.3	1190	gGc/gAc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998882	100998882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	111	563	0	ENST00000325455.5:c.920C>A	p.Pro307His	p.P307H	ENST00000325455	NM_001202474.3	307	cCt/cAt																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	86	488	5	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	108	426	5	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18524203	18524203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	156	650	0	ENST00000266497.5:c.1715C>T	p.Ala572Val	p.A572V	ENST00000266497		572	gCa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	167	485	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441815	49441816	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	258	612	4	ENST00000301067.7:c.4168dupG	p.Ala1390GlyfsTer42	p.A1390Gfs*42	ENST00000301067	NM_003482.3	1390	gca/gGca																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480445	50480445	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	153	560	0	ENST00000394963.4:c.407G>T	p.Arg136Met	p.R136M	ENST00000394963	NM_003076.4	136	aGg/aTg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	88	600	4	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
POLE	5426	MSKCC	GRCh37	12	133240613	133240613	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201115064		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	153	557	1	ENST00000320574.5:c.2683G>A	p.Ala895Thr	p.A895T	ENST00000320574	NM_006231.2	895	Gcc/Acc																																																																															
POLE	5426	MSKCC	GRCh37	12	133248878	133248878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	254	656	0	ENST00000320574.5:c.1717C>T	p.Arg573Trp	p.R573W	ENST00000320574	NM_006231.2	573	Cgg/Tgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929041	32929041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	76	574	0	ENST00000380152.3:c.7051G>A	p.Ala2351Thr	p.A2351T	ENST00000380152		2351	Gca/Aca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	76	564	6	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524568	103524568	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	74	275	0	ENST00000355739.4:c.2705del	p.Asn902IlefsTer4	p.N902Ifs*4	ENST00000355739	NM_000123.3	900	cAa/ca																																																																															
AKT1	207	MSKCC	GRCh37	14	105242099	105242099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	112	674	0	ENST00000349310.3:c.325G>A	p.Gly109Ser	p.G109S	ENST00000349310	NM_001014432.1	109	Ggc/Agc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	95	738	4	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	120	572	6	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	112	454	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3830776	3830776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	101	554	0	ENST00000262367.5:c.1780G>A	p.Glu594Lys	p.E594K	ENST00000262367	NM_004380.2	594	Gaa/Aaa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67670755	67670755	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	89	520	0	ENST00000264010.4:c.1999+1G>A		p.X667_splice	ENST00000264010	NM_006565.3	667																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72830319	72830319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	58	342	0	ENST00000268489.5:c.6262C>T	p.Leu2088Phe	p.L2088F	ENST00000268489	NM_006885.3	2088	Ctc/Ttc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830431	72830432	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	29	292	1	ENST00000268489.5:c.6149dup	p.Leu2051ThrfsTer105	p.L2051Tfs*105	ENST00000268489	NM_006885.3	2050	cca/ccCa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993679	72993679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	76	541	0	ENST00000268489.5:c.366G>T	p.Glu122Asp	p.E122D	ENST00000268489	NM_006885.3	122	gaG/gaT																																																																															
FANCA	2175	MSKCC	GRCh37	16	89874763	89874763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	107	640	1	ENST00000389301.3:c.535C>T	p.Leu179Phe	p.L179F	ENST00000389301	NM_000135.2	179	Ctt/Ttt																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	192	681	0	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																																																															
NF1	4763	MSKCC	GRCh37	17	29508464	29508464	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	75	482	0	ENST00000358273.4:c.611T>C	p.Leu204Pro	p.L204P	ENST00000358273	NM_001042492.2	204	cTa/cCa																																																																															
NF1	4763	MSKCC	GRCh37	17	29579995	29579996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	84	423	2	ENST00000358273.4:c.4157dupA	p.Glu1387GlyfsTer8	p.E1387Gfs*8	ENST00000358273	NM_001042492.2	1384	gaa/gAaa																																																																															
RARA	5914	MSKCC	GRCh37	17	38512401	38512402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs745553450		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	82	520	0	ENST00000254066.5:c.1319dup	p.Pro441AlafsTer5	p.P441Afs*5	ENST00000254066	NM_000964.3	438	gcc/gCcc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	90	627	1	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
STAT3	6774	MSKCC	GRCh37	17	40483548	40483548	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	67	434	0	ENST00000264657.5:c.1051T>G	p.Leu351Val	p.L351V	ENST00000264657	NM_139276.2	351	Ttg/Gtg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	126	691	4	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78617569	78617569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	97	500	0	ENST00000306801.3:c.307G>A	p.Gly103Ser	p.G103S	ENST00000306801	NM_020761.2	103	Ggt/Agt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78831665	78831665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	134	697	1	ENST00000306801.3:c.1474G>A	p.Val492Ile	p.V492I	ENST00000306801	NM_020761.2	492	Gtt/Att																																																																															
STK11	6794	MSKCC	GRCh37	19	1223115	1223115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	175	672	0	ENST00000326873.7:c.1052A>G	p.Glu351Gly	p.E351G	ENST00000326873	NM_000455.4	351	gAg/gGg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226304	2226304	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	128	730	1	ENST00000398665.3:c.3784C>T	p.Gln1262Ter	p.Q1262*	ENST00000398665	NM_032482.2	1262	Cag/Tag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5218538	5218538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	97	681	1	ENST00000357368.4:c.3941G>A	p.Arg1314His	p.R1314H	ENST00000357368	NM_002850.3	1314	cGc/cAc																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	110	824	4	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
AXL	558	MSKCC	GRCh37	19	41765754	41765754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	91	507	0	ENST00000301178.4:c.2630C>T	p.Ala877Val	p.A877V	ENST00000301178	NM_021913.4	877	gCt/gTt																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	337	779	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
CIC	23152	MSKCC	GRCh37	19	42795483	42795483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	82	517	0	ENST00000575354.2:c.2563G>A	p.Gly855Ser	p.G855S	ENST00000575354	NM_015125.3	855	Ggc/Agc																																																																															
CIC	23152	MSKCC	GRCh37	19	42797435	42797435	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	98	600	0	ENST00000575354.2:c.3795+2T>C		p.X1265_splice	ENST00000575354	NM_015125.3	1265																																																																																
POLD1	5424	MSKCC	GRCh37	19	50910264	50910264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	111	697	1	ENST00000440232.2:c.1519C>T	p.Arg507Cys	p.R507C	ENST00000440232	NM_002691.3	507	Cgc/Tgc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25991736	25991736	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs530632623		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	75	407	0	ENST00000435504.4:c.506C>T	p.Ala169Val	p.A169V	ENST00000435504		169	gCg/gTg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	104	512	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033352	48033352	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs63750949		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	100	452	0	ENST00000234420.5:c.3656C>T	p.Thr1219Ile	p.T1219I	ENST00000234420	NM_000179.2	1219	aCt/aTt																																																																															
TOP1	7150	MSKCC	GRCh37	20	39713151	39713151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	111	365	0	ENST00000361337.2:c.557C>T	p.Pro186Leu	p.P186L	ENST00000361337	NM_003286.2	186	cCt/cTt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	74	456	3	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
EP300	2033	MSKCC	GRCh37	22	41566524	41566525	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	93	461	3	ENST00000263253.7:c.4408dup	p.Met1470AsnfsTer3	p.M1470Nfs*3	ENST00000263253	NM_001429.3	1467	-/A																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	193	355	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
RHOA	387	MSKCC	GRCh37	3	49412922	49412922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	132	795	0	ENST00000418115.1:c.101A>G	p.Tyr34Cys	p.Y34C	ENST00000418115	NM_001664.2	34	tAt/tGt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49935972	49935972	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	133	693	0	ENST00000296474.3:c.1698C>A	p.His566Gln	p.H566Q	ENST00000296474	NM_002447.2	566	caC/caA																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	128	487	0	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138474616	138474617	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	86	506	0	ENST00000289153.2:c.376dup	p.Ile126AsnfsTer11	p.I126Nfs*11	ENST00000289153	NM_006219.2	126	att/aAtt																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	121	728	2	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510239	187510239	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	113	501	0	ENST00000441802.2:c.13274A>G	p.Tyr4425Cys	p.Y4425C	ENST00000441802	NM_005245.3	4425	tAc/tGc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294163	1294163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199701877		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	129	796	0	ENST00000310581.5:c.838G>A	p.Glu280Lys	p.E280K	ENST00000310581	NM_198253.2	280	Gaa/Aaa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67575459	67575459	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141319498		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	90	410	0	ENST00000274335.5:c.532G>A	p.Asp178Asn	p.D178N	ENST00000274335		178	Gat/Aat																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515235	149515235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	127	626	0	ENST00000261799.4:c.247A>G	p.Ser83Gly	p.S83G	ENST00000261799	NM_002609.3	83	Agc/Ggc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519423	176519423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	112	790	2	ENST00000292408.4:c.829G>A	p.Ala277Thr	p.A277T	ENST00000292408	NM_213647.1	277	Gcc/Acc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	75	626	1	ENST00000261937.6:c.89dupC	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																															
PIM1	5292	MSKCC	GRCh37	6	37138798	37138798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	138	431	0	ENST00000373509.5:c.231G>T	p.Trp77Cys	p.W77C	ENST00000373509	NM_002648.3	77	tgG/tgT																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192384	138192384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	70	225	0	ENST00000237289.4:c.20C>A	p.Pro7His	p.P7H	ENST00000237289	NM_001270507.1	7	cCt/cAt																																																																															
SMO	6608	MSKCC	GRCh37	7	128851988	128851988	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55722779		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	97	686	1	ENST00000249373.3:c.2060C>T	p.Pro687Leu	p.P687L	ENST00000249373	NM_005631.4	687	cCg/cTg																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	86	691	2	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860073	151860074	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	67	427	0	ENST00000262189.6:c.10588dup	p.Ser3530PhefsTer36	p.S3530Ffs*36	ENST00000262189	NM_170606.2	3530	tct/tTct																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860448	151860448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	98	597	0	ENST00000262189.6:c.10214G>A	p.Arg3405Gln	p.R3405Q	ENST00000262189	NM_170606.2	3405	cGa/cAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012326	152012326	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	118	460	0	ENST00000262189.6:c.487T>C	p.Trp163Arg	p.W163R	ENST00000262189	NM_170606.2	163	Tgg/Cgg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740324	145740324	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	325	637	0	ENST00000428558.2:c.1616A>C	p.Asp539Ala	p.D539A	ENST00000428558	NM_004260.3	539	gAc/gCc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340442	8340442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	84	399	0	ENST00000356435.5:c.5154G>T	p.Gln1718His	p.Q1718H	ENST00000356435		1718	caG/caT																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882049	36882050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	105	764	0	ENST00000358127.4:c.963dupC	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	-/C																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211539	98211539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	99	554	0	ENST00000331920.6:c.3616C>T	p.Arg1206Cys	p.R1206C	ENST00000331920	NM_000264.3	1206	Cgc/Tgc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918253	44918253	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	86	207	0	ENST00000377967.4:c.878G>A	p.Cys293Tyr	p.C293Y	ENST00000377967	NM_021140.2	293	tGc/tAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413109	63413109	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	126	358	0	ENST00000330258.3:c.58A>G	p.Thr20Ala	p.T20A	ENST00000330258	NM_152424.3	20	Acc/Gcc																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	12	100	2	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70348996	70348996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	138	323	1	ENST00000374080.3:c.3508C>T	p.Arg1170Trp	p.R1170W	ENST00000374080		1170	Cgg/Tgg																																																																															
ATRX	546	MSKCC	GRCh37	X	76855252	76855252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	81	236	0	ENST00000373344.5:c.5735C>T	p.Ala1912Val	p.A1912V	ENST00000373344	NM_000489.3	1912	gCc/gTc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0028583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	373	778	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81972509	81972509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	296	683	0	ENST00000359376.3:c.3302C>T	p.Thr1101Met	p.T1101M	ENST00000359376	NM_002661.3	1101	aCg/aTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134898755	134898755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	260	543	0	ENST00000398015.3:c.1813G>A	p.Glu605Lys	p.E605K	ENST00000398015	NM_004441.4	605	Gaa/Aaa																																																																															
YES1	7525	MSKCC	GRCh37	18	732914	732914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	416	832	2	ENST00000314574.4:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000314574	NM_005433.3	448	cGg/cAg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0028584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	216	558	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	445	561	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	88	213	0				ENST00000310581	NM_198253.2																																																																																	
MTOR	2475	MSKCC	GRCh37	1	11189847	11189847	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	281	709	0	ENST00000361445.4:c.5662T>C	p.Phe1888Leu	p.F1888L	ENST00000361445	NM_004958.3	1888	Ttc/Ctc																																																																															
APC	324	MSKCC	GRCh37	5	112174213	112174214	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	186	499	0	ENST00000257430.4:c.2926dup	p.Arg976LysfsTer9	p.R976Kfs*9	ENST00000257430	NM_000038.5	974	-/A																																																																															
ELF3	1999	MSKCC	GRCh37	1	201980403	201980404	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCAGATG			P-0028584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1291	279	729	0	ENST00000359651.3:c.140_147dup	p.Ser50ProfsTer108	p.S50Pfs*108	ENST00000359651		47	ccc/cCCCAGATGcc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457409	67457410	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0028584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	61	687	0	ENST00000327367.4:c.387_388del	p.Arg129SerfsTer36	p.R129Sfs*36	ENST00000327367	NM_005902.3	128	cAG/c																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45394778	45394778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	64	511	0	ENST00000262160.6:c.571C>T	p.Pro191Ser	p.P191S	ENST00000262160	NM_005901.5	191	Ccg/Tcg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281281	15281281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776163983		P-0028584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	308	695	2	ENST00000263388.2:c.4975G>A	p.Val1659Ile	p.V1659I	ENST00000263388	NM_000435.2	1659	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112175729	112175729	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	158	358	0	ENST00000257430.4:c.4438C>T	p.Gln1480Ter	p.Q1480*	ENST00000257430	NM_000038.5	1480	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	90	518	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	87	656	1	ENST00000269305.4:c.809T>C	p.Phe270Ser	p.F270S	ENST00000269305	NM_001126112.2	270	tTt/tCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	325	710	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	274	617	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39584438	39584438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	221	559	0	ENST00000262039.4:c.1103C>T	p.Ser368Phe	p.S368F	ENST00000262039	NM_002647.2	368	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	416	849	1	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974799	21974799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	96	166	0	ENST00000304494.5:c.28G>T	p.Glu10Ter	p.E10*	ENST00000304494	NM_000077.4	10	Gag/Tag																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649856	88649856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	67	411	0	ENST00000372037.3:c.105G>A	p.Met35Ile	p.M35I	ENST00000372037	NM_004329.2	35	atG/atA																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117545	70117545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	209	600	0	ENST00000245479.2:c.13G>A	p.Asp5Asn	p.D5N	ENST00000245479	NM_000346.3	5	Gac/Aac																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257226	16257226	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	268	686	0	ENST00000375759.3:c.4491G>C	p.Lys1497Asn	p.K1497N	ENST00000375759	NM_015001.2	1497	aaG/aaC																																																																															
SMYD3	64754	MSKCC	GRCh37	1	245927422	245927422	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	126	656	0	ENST00000388985.4:c.1106G>C	p.Arg369Thr	p.R369T	ENST00000388985		369	aGa/aCa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18443859	18443859	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	157	604	0	ENST00000266497.5:c.832T>A	p.Phe278Ile	p.F278I	ENST00000266497		278	Ttt/Att																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445703	49445703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1507	183	1076	1	ENST00000301067.7:c.1763C>T	p.Ser588Leu	p.S588L	ENST00000301067	NM_003482.3	588	tCa/tTa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37673804	37673804	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	61	643	0	ENST00000447079.4:c.2958C>G	p.Phe986Leu	p.F986L	ENST00000447079	NM_015083.1	986	ttC/ttG																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374945	45374945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	245	641	0	ENST00000262160.6:c.898G>A	p.Asp300Asn	p.D300N	ENST00000262160	NM_005901.5	300	Gat/Aat																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602863	10602871	+	inframe_deletion	In_Frame_Del	DEL	CGTTCAGGT	CGTTCAGGT	-			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	368	856	0	ENST00000171111.5:c.707_715del	p.Asp236_Asn238del	p.D236_N238del	ENST00000171111	NM_203500.1	236	gACCTGAACGtg/gtg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11118590	11118590	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	99	409	0	ENST00000344626.4:c.2014G>C	p.Glu672Gln	p.E672Q	ENST00000344626	NM_003072.3	672	Gag/Cag																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62293947	62293949	+	missense_variant	Missense_Mutation	ONP	TGA	TGA	CCT			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	134	732	2	ENST00000508582.2:c.516_518delinsCCT	p.Glu173Leu	p.E173L	ENST00000508582		172	ccTGAg/ccCCTg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71008508	71008508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	199	410	0	ENST00000318789.4:c.1924C>T	p.Pro642Ser	p.P642S	ENST00000318789	NM_032682.5	642	Cca/Tca																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119545642	119545642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	100	500	1	ENST00000316626.5:c.1295C>T	p.Ser432Phe	p.S432F	ENST00000316626		432	tCc/tTc																																																																															
KDR	3791	MSKCC	GRCh37	4	55964346	55964346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	98	620	1	ENST00000263923.4:c.2467G>A	p.Asp823Asn	p.D823N	ENST00000263923	NM_002253.2	823	Gat/Aat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542903	187542903	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	79	370	0	ENST00000441802.2:c.4837G>C	p.Asp1613His	p.D1613H	ENST00000441802	NM_005245.3	1613	Gat/Cat																																																																															
NSD1	64324	MSKCC	GRCh37	5	176631156	176631156	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	256	583	0	ENST00000439151.2:c.1099G>C	p.Glu367Gln	p.E367Q	ENST00000439151	NM_022455.4	367	Gag/Cag																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287875	33287875	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	277	605	0	ENST00000374542.5:c.1378G>C	p.Asp460His	p.D460H	ENST00000374542	NM_001141970.1	460	Gat/Cat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045491	47045491	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	272	373	0	ENST00000329236.7:c.2224G>T	p.Glu742Ter	p.E742*	ENST00000329236	NM_001204466.1	742	Gaa/Taa																																																																															
ARAF	369	MSKCC	GRCh37	X	47426126	47426126	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	373	436	0	ENST00000377045.4:c.646C>A	p.Pro216Thr	p.P216T	ENST00000377045	NM_001654.4	216	Ccc/Acc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	200	539	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	1917	569	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0028603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	449	650	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44910996	44910999	+	frameshift_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0028603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	256	322	0	ENST00000377967.4:c.701_704delCAGA	p.Thr234ArgfsTer7	p.T234Rfs*7	ENST00000377967	NM_021140.2	233	CAGAca/ca																																																																															
CYLD	1540	MSKCC	GRCh37	16	50827471	50827471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	105	523	1	ENST00000398568.2:c.2356C>T	p.Arg786Trp	p.R786W	ENST00000398568	NM_001042412.1	786	Cgg/Tgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29576112	29576112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	464	607	0	ENST00000358273.4:c.4085G>A	p.Arg1362Gln	p.R1362Q	ENST00000358273	NM_001042492.2	1362	cGa/cAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40747075	40747075	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199637632		P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	504	682	3	ENST00000373198.4:c.3007G>A	p.Val1003Ile	p.V1003I	ENST00000373198	NM_133170.3	1003	Gtc/Atc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38314894	38314894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	468	536	0	ENST00000425967.3:c.170C>A	p.Ser57Tyr	p.S57Y	ENST00000425967	NM_001174067.1	57	tCc/tAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711873	89711873	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	335	445	0	ENST00000371953.3:c.493-2A>T		p.X165_splice	ENST00000371953	NM_000314.4	165																																																																																
WT1	7490	MSKCC	GRCh37	11	32417803	32417803	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	335	406	0	ENST00000332351.3:c.1249G>A	p.Gly417Ser	p.G417S	ENST00000332351	NM_024426.4	417	Ggt/Agt																																																																															
POLE	5426	MSKCC	GRCh37	12	133218763	133218763	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	682	521	0	ENST00000320574.5:c.5173G>T	p.Val1725Leu	p.V1725L	ENST00000320574	NM_006231.2	1725	Gtg/Ttg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562852	21562852	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	660	728	1	ENST00000382592.4:c.1067A>G	p.Asn356Ser	p.N356S	ENST00000382592	NM_014572.2	356	aAc/aGc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514535	103514535	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	562	342	0	ENST00000355739.4:c.1036C>G	p.Leu346Val	p.L346V	ENST00000355739	NM_000123.3	346	Cta/Gta																																																																															
BLM	641	MSKCC	GRCh37	15	91293193	91293193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	436	587	0	ENST00000355112.3:c.695G>T	p.Ser232Ile	p.S232I	ENST00000355112	NM_000057.2	232	aGc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578254	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	624	718	1	ENST00000269305.4:c.595_596delinsAT	p.Gly199Ile	p.G199I	ENST00000269305	NM_001126112.2	199	GGa/ATa																																																																															
NF1	4763	MSKCC	GRCh37	17	29653064	29653064	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	373	418	0	ENST00000358273.4:c.5062G>T	p.Glu1688Ter	p.E1688*	ENST00000358273	NM_001042492.2	1688	Gag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1207143	1207143	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	813	911	3	ENST00000326873.7:c.231del	p.Lys78ArgfsTer18	p.K78Rfs*18	ENST00000326873	NM_000455.4	77	gtC/gt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132428	11132428	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	674	753	0	ENST00000344626.4:c.2644G>C	p.Glu882Gln	p.E882Q	ENST00000344626	NM_003072.3	882	Gaa/Caa																																																																															
ALK	238	MSKCC	GRCh37	2	29455302	29455302	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	418	494	0	ENST00000389048.3:c.2500G>T	p.Val834Leu	p.V834L	ENST00000389048	NM_004304.4	834	Gtg/Ttg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99170804	99170804	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	521	562	0	ENST00000074304.5:c.1433G>T	p.Arg478Leu	p.R478L	ENST00000074304	NM_001134224.1	478	cGg/cTg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99189350	99189350	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	578	698	0	ENST00000074304.5:c.2606G>T	p.Arg869Leu	p.R869L	ENST00000074304	NM_001134224.1	869	cGg/cTg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546901	9546901	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	433	553	0	ENST00000353224.5:c.1121C>G	p.Pro374Arg	p.P374R	ENST00000353224	NM_177990.2	374	cCg/cGg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561251	9561251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	385	540	0	ENST00000353224.5:c.531C>A	p.His177Gln	p.H177Q	ENST00000353224	NM_177990.2	177	caC/caA																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023564	31023564	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	720	567	1	ENST00000375687.4:c.3049G>T	p.Asp1017Tyr	p.D1017Y	ENST00000375687	NM_015338.5	1017	Gac/Tac																																																																															
ATR	545	MSKCC	GRCh37	3	142168299	142168299	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	352	488	0	ENST00000350721.4:c.7907T>G	p.Met2636Arg	p.M2636R	ENST00000350721	NM_001184.3	2636	aTg/aGg																																																																															
TP63	8626	MSKCC	GRCh37	3	189526314	189526314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	382	382	0	ENST00000264731.3:c.578C>A	p.Thr193Lys	p.T193K	ENST00000264731	NM_003722.4	193	aCg/aAg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1955114	1955114	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	737	756	0	ENST00000382891.5:c.2201A>T	p.Gln734Leu	p.Q734L	ENST00000382891	NM_133335.3	734	cAg/cTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55964872	55964872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	193	451	0	ENST00000263923.4:c.2365G>C	p.Val789Leu	p.V789L	ENST00000263923	NM_002253.2	789	Gtt/Ctt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944305	131944305	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	121	307	0	ENST00000265335.6:c.2719-2A>C		p.X907_splice	ENST00000265335		907																																																																																
FLT4	2324	MSKCC	GRCh37	5	180047245	180047245	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	341	816	2	ENST00000261937.6:c.2470C>A	p.Leu824Met	p.L824M	ENST00000261937	NM_182925.4	824	Ctg/Atg																																																																															
E2F3	1871	MSKCC	GRCh37	6	20490522	20490522	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	809	688	1	ENST00000346618.3:c.1259G>T	p.Gly420Val	p.G420V	ENST00000346618	NM_001949.4	420	gGa/gTa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32181947	32181947	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	1524	717	0	ENST00000375023.3:c.2107G>T	p.Gly703Trp	p.G703W	ENST00000375023	NM_004557.3	703	Ggg/Tgg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106536190	106536190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	431	519	0	ENST00000369096.4:c.157G>A	p.Glu53Lys	p.E53K	ENST00000369096	NM_001198.3	53	Gag/Aag																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87359944	87359944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	464	508	0	ENST00000277120.3:c.1252C>A	p.Pro418Thr	p.P418T	ENST00000277120		418	Cct/Act																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030485	47030485	+	intron_variant	Intron	DEL	G	G	-			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	658	424	0	ENST00000329236.7:c.201+1589del		p.*67*	ENST00000329236	NM_001204466.1	67																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21974812	21974813	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	123	126	0	ENST00000304494.5:c.14_15delinsA	p.Ala5GlufsTer21	p.A5Efs*21	ENST00000304494	NM_000077.4	5	gCG/gA																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0028608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	186	439	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	136	420	0	ENST00000257430.4:c.4364delA	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519980		P-0028608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	281	623	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0028608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	476	571	2	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661726	227661726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	242	477	0	ENST00000305123.5:c.1729G>A	p.Val577Met	p.V577M	ENST00000305123	NM_005544.2	577	Gtg/Atg																																																																															
STK11	6794	MSKCC	GRCh37	19	1219317	1219321	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CCCCA	CCCCA	-			P-0028608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	250	623	0	ENST00000326873.7:c.375-5_375-1del		p.X125_splice	ENST00000326873	NM_000455.4	125																																																																																
PIK3R2	5296	MSKCC	GRCh37	19	18277009	18277009	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	90	621	0	ENST00000222254.8:c.1456G>T	p.Glu486Ter	p.E486*	ENST00000222254	NM_005027.3	486	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	123	595	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0028609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	74	739	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044713	47044713	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	62	831	0	ENST00000329236.7:c.1879G>T	p.Glu627Ter	p.E627*	ENST00000329236	NM_001204466.1	627	Gag/Tag																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514079	69514079	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	47	706	1	ENST00000294312.3:c.602G>T	p.Gly201Val	p.G201V	ENST00000294312	NM_005117.2	201	gGg/gTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0028613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	23	373	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0028613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	46	319	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0028613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	22	418	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120178	70120178	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057518216		P-0028613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	70	400	0	ENST00000245479.2:c.1180C>T	p.Arg394Ter	p.R394*	ENST00000245479	NM_000346.3	394	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438641	49438641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	42	562	0	ENST00000301067.7:c.4849C>T	p.Arg1617Trp	p.R1617W	ENST00000301067	NM_003482.3	1617	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0028615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	1449	565	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
RAB35	11021	MSKCC	GRCh37	12	120536921	120536921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	243	640	0	ENST00000229340.5:c.265G>A	p.Asp89Asn	p.D89N	ENST00000229340	NM_006861.6	89	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579408	7579408	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	235	732	0	ENST00000269305.4:c.279delG	p.Ser94HisfsTer29	p.S94Hfs*29	ENST00000269305	NM_001126112.2	93	ctG/ct																																																																															
CASP8	841	MSKCC	GRCh37	2	202136260	202136262	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs763516126		P-0028615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	57	496	0	ENST00000358485.4:c.509_511del	p.Glu170del	p.E170del	ENST00000358485	NM_001080125.1	168	tcAGAa/tca																																																																															
APC	324	MSKCC	GRCh37	5	112154820	112154820	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	82	524	0	ENST00000257430.4:c.1091A>T	p.Asp364Val	p.D364V	ENST00000257430	NM_000038.5	364	gAc/gTc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275463	38275463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	143	698	0	ENST00000425967.3:c.1570G>T	p.Val524Leu	p.V524L	ENST00000425967	NM_001174067.1	524	Gtg/Ttg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	148	434	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0028618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	271	535	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0028622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	150	594	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436854	110436854	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	68	646	0	ENST00000375856.3:c.1547A>G	p.His516Arg	p.H516R	ENST00000375856	NM_003749.2	516	cAc/cGc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992825	72992825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	41	507	0	ENST00000268489.5:c.1220C>T	p.Thr407Ile	p.T407I	ENST00000268489	NM_006885.3	407	aCc/aTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730882	40730882	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	69	637	1	ENST00000373198.4:c.3653T>A	p.Leu1218Gln	p.L1218Q	ENST00000373198	NM_133170.3	1218	cTg/cAg																																																																															
NF1	4763	MSKCC	GRCh37	17	29552120	29552120	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	28	195	0	ENST00000358273.4:c.1853A>G	p.Asp618Gly	p.D618G	ENST00000358273	NM_001042492.2	618	gAt/gGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0028623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	163	614	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0028623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	125	599	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
ALK	238	MSKCC	GRCh37	2	29449800	29449800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs76742576		P-0028623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	216	851	2	ENST00000389048.3:c.3055G>A	p.Val1019Ile	p.V1019I	ENST00000389048	NM_004304.4	1019	Gtc/Atc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65323451	65323451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	51	421	0	ENST00000342505.4:c.1346C>T	p.Ala449Val	p.A449V	ENST00000342505	NM_002227.2	449	gCc/gTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045184	47045198	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATGGAGGTGAGGTGT	ATGGAGGTGAGGTGT	-			P-0028623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	115	558	2	ENST00000329236.7:c.2191_2196+9del		p.X731_splice	ENST00000329236	NM_001204466.1	731																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72993339	72993339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	402	714	0	ENST00000268489.5:c.706G>A	p.Val236Met	p.V236M	ENST00000268489	NM_006885.3	236	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579536	7579537	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AATA			P-0028625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	751	680	1	ENST00000269305.4:c.147_150dup	p.Glu51TyrfsTer2	p.E51Yfs*2	ENST00000269305	NM_001126112.2	50	-/TATT																																																																															
RASA1	5921	MSKCC	GRCh37	5	86670040	86670040	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	84	451	0	ENST00000274376.6:c.1837A>G	p.Asn613Asp	p.N613D	ENST00000274376	NM_002890.2	613	Aat/Gat																																																																															
HGF	3082	MSKCC	GRCh37	7	81374326	81374326	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	110	316	0	ENST00000222390.5:c.736T>A	p.Leu246Met	p.L246M	ENST00000222390	NM_000601.4	246	Ttg/Atg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100950	41100950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	35	455	0	ENST00000373198.4:c.1406G>T	p.Gly469Val	p.G469V	ENST00000373198	NM_133170.3	469	gGc/gTc																																																																															
MGA	23269	MSKCC	GRCh37	15	42053934	42053941	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAGGCCTT	TAGGCCTT	-			P-0028627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	77	283	0	ENST00000219905.7:c.7399-3_7403del		p.X2467_splice	ENST00000219905	NM_001164273.1	2467																																																																																
SOS1	6654	MSKCC	GRCh37	2	39233616	39233616	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	98	449	0	ENST00000402219.2:c.2728G>T	p.Asp910Tyr	p.D910Y	ENST00000402219	NM_005633.3	910	Gat/Tat																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391202	89391202	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	33	373	0	ENST00000336596.2:c.1268G>T	p.Arg423Ile	p.R423I	ENST00000336596	NM_005233.5	423	aGa/aTa																																																																															
KIT	3815	MSKCC	GRCh37	4	55564686	55564686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	42	475	0	ENST00000288135.5:c.574G>A	p.Gly192Ser	p.G192S	ENST00000288135	NM_000222.2	192	Ggc/Agc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197762	66197762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	47	419	0	ENST00000273854.3:c.2937G>C	p.Met979Ile	p.M979I	ENST00000273854	NM_004439.5	979	atG/atC																																																																															
MET	4233	MSKCC	GRCh37	7	116412042	116412047	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTAT	AGGTAT	-			P-0028627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	172	642	0	ENST00000397752.3:c.3028_3028+5delGGTATA		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8525018	8525018	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	25	356	0	ENST00000356435.5:c.586C>A	p.Gln196Lys	p.Q196K	ENST00000356435		196	Cag/Aag																																																																															
MED12	9968	MSKCC	GRCh37	X	70340847	70340847	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	46	585	0	ENST00000374080.3:c.580T>G	p.Leu194Val	p.L194V	ENST00000374080		194	Tta/Gta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0028628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	58	441	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	149	638	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																															
TOP1	7150	MSKCC	GRCh37	20	39741564	39742586	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTGAGAGCATCTTCCCATCGGCATTGTCTAGTGTTGAGCTTAACAAAGGGAGTTTCTGCTCTGCCCCAGGCCCTGTGCCACATACTGTATATCACAACTCAACATACATATATTTGTATGTAAAACTGAATCAAAAGTTGCACAAAACAATGCTTAGCCTTACTGTGAGCAGTAGATTCTGATCTTTTTTTAACTCTATTTCATTCCTTTAGAAAGTTGGTTATAACTTATAAAATTGTTTAAATAAACCATGCAGGTATCACCATTATATAGTTTTAAAGACCACGCTCTAGAGGAGATCAATTTCTTGGTACTCACGAGAAGAAAAAAAAGTTCATGTTTTTCCCCCAGTCTTGTATTTTAACATAAGTTCTGAATTGTCTCAAAATTCACACTAGCTTTTTGAGTTTGATTGCCCAGAGTAGCAGCACTCCCTCATTTGCTGCCTTATTTAATTTTTTTTTTCCTTTTCTCCATCCCTATTTCAGAGGACAGAATAGAAAGAAAAGGAGCATGAATATTTAACATCCCTATAGATTTCATAGTGAGTGGGGGAGGAAGTAACACTGCAGAATCCAGAGTTCCCAGGCCATGCTGACTGATGCTGTGGCTTCAAACAGAATTGGGAGGCTTCTGTTTTGGATGCCTAGAAATTGCATAAGGGTCAAAAGGCTGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGAACACGAGGTCAAGAGACCATCCTGGCCAATGTGGTGAAACCCCATCTCTACTAAAAATACAAAAAAAAAAAAAAAAATAAAAATTGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTCGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGACGGAGCTTGCAGTGAGCCAAAATTGCGCCATTGCACTCTAGCCTGGCGACAGAGCGAGACTGTCTCAAAAAAAAAAAAAAAAAAAACACAGAACGAAATTGTGTAAGGATCATGTCTCTTCCATTCATGCTCA	AGGTGAGAGCATCTTCCCATCGGCATTGTCTAGTGTTGAGCTTAACAAAGGGAGTTTCTGCTCTGCCCCAGGCCCTGTGCCACATACTGTATATCACAACTCAACATACATATATTTGTATGTAAAACTGAATCAAAAGTTGCACAAAACAATGCTTAGCCTTACTGTGAGCAGTAGATTCTGATCTTTTTTTAACTCTATTTCATTCCTTTAGAAAGTTGGTTATAACTTATAAAATTGTTTAAATAAACCATGCAGGTATCACCATTATATAGTTTTAAAGACCACGCTCTAGAGGAGATCAATTTCTTGGTACTCACGAGAAGAAAAAAAAGTTCATGTTTTTCCCCCAGTCTTGTATTTTAACATAAGTTCTGAATTGTCTCAAAATTCACACTAGCTTTTTGAGTTTGATTGCCCAGAGTAGCAGCACTCCCTCATTTGCTGCCTTATTTAATTTTTTTTTTCCTTTTCTCCATCCCTATTTCAGAGGACAGAATAGAAAGAAAAGGAGCATGAATATTTAACATCCCTATAGATTTCATAGTGAGTGGGGGAGGAAGTAACACTGCAGAATCCAGAGTTCCCAGGCCATGCTGACTGATGCTGTGGCTTCAAACAGAATTGGGAGGCTTCTGTTTTGGATGCCTAGAAATTGCATAAGGGTCAAAAGGCTGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGAACACGAGGTCAAGAGACCATCCTGGCCAATGTGGTGAAACCCCATCTCTACTAAAAATACAAAAAAAAAAAAAAAAATAAAAATTGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTCGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGACGGAGCTTGCAGTGAGCCAAAATTGCGCCATTGCACTCTAGCCTGGCGACAGAGCGAGACTGTCTCAAAAAAAAAAAAAAAAAAAACACAGAACGAAATTGTGTAAGGATCATGTCTCTTCCATTCATGCTCA	-			P-0028628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	41	367	0	ENST00000361337.2:c.1451_1453-24del		p.X484_splice	ENST00000361337	NM_003286.2	484																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27099394	27099395	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0028628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	129	680	0	ENST00000324856.7:c.3632_3633del	p.Tyr1211SerfsTer8	p.Y1211Sfs*8	ENST00000324856	NM_006015.4	1211	TAt/t																																																																															
NF1	4763	MSKCC	GRCh37	17	29559209	29559209	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0028628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	117	331	0	ENST00000358273.4:c.3314+2T>C		p.X1105_splice	ENST00000358273	NM_001042492.2	1105																																																																																
TOP1	7150	MSKCC	GRCh37	20	39728884	39729848	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	GTGAGCTCGCACTTCATCCTATGGGCCAAAAAGGGGGTGGAGGGCGTCCTTTATTGTACTTGGGAATATTTCCCAGGTTACACAGGACTGTTTGGGAAGGGAGATACTTAAGAGCAGGACAGTATTTCATGCGTAGGTCTCCAGATGTTTTTGAGGTACAGTTGTCTCCCCTCATCCACAGGGGATATGTTCCAAGACCCCCAGTGGATGCCTGCAACTTCGACCCAATTGCTGTCACTTGGAACACATTTCTGTTGATGTCTTCCACCCCCAAATTTAATGTCTTTTCCATGTTTATTAAGTACTTATCACATAGAGTGGCTATAACTTTTGCAGTCTGAGGCACAACAGCAAAACTAGCACGACTTTCTTTTTCCTTCTTCACAATTTCACAGATGGAAGGTTAATTCTTACCTTAGATCTTAGCAACTTCACCATACAGTTTTTTTTATTAAGTCGATAATTTCCACCTTTTCATTTAAAGCACTCTGTGCAGCTTCTGTATGGCATATCCAAATTGCCAACATCACCACTTTCACACTTTGGGGCCTTTATTAAGTAAAAGAAGGATTACTTGAACACAAGCAATGTAAAACCATTAAAGTCAACCTGATAAATAAGGCAGCTACTAGGTTACCCATGGGCAAGTGACATATACAGCATGGTATGTTGTATATATGGTTCACGCATCCCAGGTGGGACTACAAGAGATTTCATCATGCTCCTCAGAATGATGTGCAATTTAAAACTTACAAAATGTTTATTTCTGGAATTTTGTATTGAATATTTTCGGATGACAGTTGGCTGAGGGTAAGTAAAACCATGCATAAGGTGGGACTACTGTATTGACTGTTAAGAAGGAAACTTGGAAAATTATGCTCAGCAGATAGGTCCACTTGGGGTCATGAAAGGTGAAATTATTCCTCACATCTTATTTCACTATCCTCGTGCTCTGTTATTTCCAG	GTGAGCTCGCACTTCATCCTATGGGCCAAAAAGGGGGTGGAGGGCGTCCTTTATTGTACTTGGGAATATTTCCCAGGTTACACAGGACTGTTTGGGAAGGGAGATACTTAAGAGCAGGACAGTATTTCATGCGTAGGTCTCCAGATGTTTTTGAGGTACAGTTGTCTCCCCTCATCCACAGGGGATATGTTCCAAGACCCCCAGTGGATGCCTGCAACTTCGACCCAATTGCTGTCACTTGGAACACATTTCTGTTGATGTCTTCCACCCCCAAATTTAATGTCTTTTCCATGTTTATTAAGTACTTATCACATAGAGTGGCTATAACTTTTGCAGTCTGAGGCACAACAGCAAAACTAGCACGACTTTCTTTTTCCTTCTTCACAATTTCACAGATGGAAGGTTAATTCTTACCTTAGATCTTAGCAACTTCACCATACAGTTTTTTTTATTAAGTCGATAATTTCCACCTTTTCATTTAAAGCACTCTGTGCAGCTTCTGTATGGCATATCCAAATTGCCAACATCACCACTTTCACACTTTGGGGCCTTTATTAAGTAAAAGAAGGATTACTTGAACACAAGCAATGTAAAACCATTAAAGTCAACCTGATAAATAAGGCAGCTACTAGGTTACCCATGGGCAAGTGACATATACAGCATGGTATGTTGTATATATGGTTCACGCATCCCAGGTGGGACTACAAGAGATTTCATCATGCTCCTCAGAATGATGTGCAATTTAAAACTTACAAAATGTTTATTTCTGGAATTTTGTATTGAATATTTTCGGATGACAGTTGGCTGAGGGTAAGTAAAACCATGCATAAGGTGGGACTACTGTATTGACTGTTAAGAAGGAAACTTGGAAAATTATGCTCAGCAGATAGGTCCACTTGGGGTCATGAAAGGTGAAATTATTCCTCACATCTTATTTCACTATCCTCGTGCTCTGTTATTTCCAG	-			P-0028628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	41	332	0	ENST00000361337.2:c.1163+1_1164-1del		p.X388_splice	ENST00000361337	NM_003286.2	388																																																																																
RASA1	5921	MSKCC	GRCh37	5	86665706	86665706	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	60	321	0	ENST00000274376.6:c.1687G>T	p.Glu563Ter	p.E563*	ENST00000274376	NM_002890.2	563	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0028630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	107	494	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576919	7576919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	125	629	0	ENST00000269305.4:c.927delC	p.Asn310ThrfsTer35	p.N310Tfs*35	ENST00000269305	NM_001126112.2	309	ccC/cc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591898	48591903	+	inframe_deletion	In_Frame_Del	DEL	TGGACC	TGGACC	-			P-0028630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	93	460	0	ENST00000342988.3:c.1061_1066del	p.Val354_Pro356delinsAla	p.V354_P356delinsA	ENST00000342988	NM_005359.5	354	gTGGACCct/gct																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259751	16259751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	302	610	2	ENST00000375759.3:c.7016G>A	p.Arg2339His	p.R2339H	ENST00000375759	NM_015001.2	2339	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023861	27023861	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	100	145	0	ENST00000324856.7:c.971del	p.Gly324AlafsTer39	p.G324Afs*39	ENST00000324856	NM_006015.4	323	Ggg/gg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	222	490	4	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599939	28599939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	267	550	0	ENST00000253063.3:c.821G>A	p.Arg274Gln	p.R274Q	ENST00000253063	NM_031459.4	274	cGg/cAg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	305	630	6	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51436044	51436044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	164	360	0	ENST00000262662.1:c.4G>A	p.Ala2Thr	p.A2T	ENST00000262662		2	Gcc/Acc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339175	65339175	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1180823763		P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	215	411	1	ENST00000342505.4:c.361G>A	p.Asp121Asn	p.D121N	ENST00000342505	NM_002227.2	121	Gac/Aac																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551928	150551928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	180	381	1	ENST00000369026.2:c.79G>A	p.Gly27Ser	p.G27S	ENST00000369026	NM_021960.4	27	Ggc/Agc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729614	162729614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	230	518	0	ENST00000367921.3:c.700G>A	p.Asp234Asn	p.D234N	ENST00000367921	NM_006182.2	234	Gat/Aat																																																																															
IL10	3586	MSKCC	GRCh37	1	206944344	206944344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	272	490	1	ENST00000423557.1:c.286C>T	p.Pro96Ser	p.P96S	ENST00000423557	NM_000572.2	96	Ccc/Tcc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	164	523	0	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123263302	123263302	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	159	389	0	ENST00000358487.5:c.1439+2T>C		p.X480_splice	ENST00000358487	NM_000141.4	480																																																																																
LMO1	4004	MSKCC	GRCh37	11	8251892	8251892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	71	571	0	ENST00000335790.3:c.185G>A	p.Gly62Asp	p.G62D	ENST00000335790	NM_002315.2	62	gGc/gAc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456619	32456621	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	125	122	1	ENST00000332351.3:c.271_273del	p.Gly91del	p.G91del	ENST00000332351	NM_024426.4	91	GGC/-																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61213502	61213502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	282	512	0	ENST00000301761.2:c.460C>T	p.Arg154Cys	p.R154C	ENST00000301761	NM_017841.2	154	Cgt/Tgt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180441	94180441	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139461096		P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	258	493	1	ENST00000323929.3:c.1727G>A	p.Arg576Gln	p.R576Q	ENST00000323929	NM_005591.3	576	cGa/cAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376556	118376556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	140	439	0	ENST00000534358.1:c.9949G>A	p.Ala3317Thr	p.A3317T	ENST00000534358	NM_005933.3	3317	Gca/Aca																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18446875	18446875	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	42	373	0	ENST00000266497.5:c.964del	p.Cys322AlafsTer13	p.C322Afs*13	ENST00000266497		320	caT/ca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425667	49425667	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	39	589	0	ENST00000301067.7:c.12821T>C	p.Leu4274Pro	p.L4274P	ENST00000301067	NM_003482.3	4274	cTc/cCc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426973	49426973	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	213	511	1	ENST00000301067.7:c.11515del	p.Gln3839SerfsTer42	p.Q3839Sfs*42	ENST00000301067	NM_003482.3	3839	Cag/ag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	277	632	1	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																															
GLI1	2735	MSKCC	GRCh37	12	57857566	57857566	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	213	463	0	ENST00000228682.2:c.92G>T	p.Gly31Val	p.G31V	ENST00000228682	NM_005269.2	31	gGg/gTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861998	57861998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	74	446	0	ENST00000228682.2:c.1299G>T	p.Glu433Asp	p.E433D	ENST00000228682	NM_005269.2	433	gaG/gaT																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811690	102811690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	78	686	1	ENST00000307046.8:c.494C>T	p.Thr165Ile	p.T165I	ENST00000307046	NM_001111285.1	165	aCa/aTa																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856193	111856193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	54	228	0	ENST00000341259.2:c.244G>A	p.Gly82Arg	p.G82R	ENST00000341259	NM_005475.2	82	Gga/Aga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112064	115112064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	243	635	3	ENST00000257566.3:c.1676C>T	p.Thr559Met	p.T559M	ENST00000257566	NM_016569.3	559	aCg/aTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117749	115117749	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs554364556		P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	168	522	1	ENST00000257566.3:c.686C>T	p.Thr229Met	p.T229M	ENST00000257566	NM_016569.3	229	aCg/aTg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121437383	121437383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	239	583	1	ENST00000257555.6:c.1721G>A	p.Ser574Asn	p.S574N	ENST00000257555		574	aGc/aAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133218864	133218864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	324	552	0	ENST00000320574.5:c.5072G>A	p.Arg1691His	p.R1691H	ENST00000320574	NM_006231.2	1691	cGc/cAc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28674623	28674623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	26	36	0	ENST00000241453.7:c.25G>A	p.Gly9Ser	p.G9S	ENST00000241453	NM_004119.2	9	Ggc/Agc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	83	478	3	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30105683	30105683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	55	495	0	ENST00000331968.5:c.1003G>A	p.Ala335Thr	p.A335T	ENST00000331968	NM_002742.2	335	Gca/Aca																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562189	95562189	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	35	390	0	ENST00000343455.3:c.5068G>A	p.Ala1690Thr	p.A1690T	ENST00000343455	NM_177438.2	1690	Gcc/Acc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467177	99467177	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149217017		P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	219	496	1	ENST00000268035.6:c.2558C>T	p.Pro853Leu	p.P853L	ENST00000268035	NM_000875.3	853	cCg/cTg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	339524	339524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	304	667	2	ENST00000262320.3:c.2378C>T	p.Pro793Leu	p.P793L	ENST00000262320	NM_003502.3	793	cCc/cTc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134248	2134250	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs1385014323		P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	227	518	0	ENST00000219476.3:c.4030_4032del	p.Glu1344del	p.E1344del	ENST00000219476	NM_000548.3	1342	cAGGag/cag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136829	2136829	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	328	662	0	ENST00000219476.3:c.4946T>G	p.Val1649Gly	p.V1649G	ENST00000219476	NM_000548.3	1649	gTc/gGc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3644599	3644599	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	152	589	0	ENST00000294008.3:c.2015T>G	p.Leu672Arg	p.L672R	ENST00000294008	NM_032444.2	672	cTc/cGc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779322	3779322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	231	514	0	ENST00000262367.5:c.5726C>T	p.Pro1909Leu	p.P1909L	ENST00000262367	NM_004380.2	1909	cCc/cTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	138	428	7	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992051	72992051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	134	545	0	ENST00000268489.5:c.1994G>A	p.Arg665His	p.R665H	ENST00000268489	NM_006885.3	665	cGt/cAt																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217628	7217628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	76	462	0	ENST00000380728.2:c.299G>A	p.Arg100Gln	p.R100Q	ENST00000380728		100	cGg/cAg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998958	11998958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	116	371	0	ENST00000353533.5:c.460C>T	p.Arg154Trp	p.R154W	ENST00000353533	NM_003010.3	154	Cgg/Tgg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16040642	16040642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	131	412	1	ENST00000268712.3:c.1492C>T	p.Arg498Cys	p.R498C	ENST00000268712	NM_006311.3	498	Cgc/Tgc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131273	17131273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	307	628	0	ENST00000285071.4:c.179C>T	p.Ala60Val	p.A60V	ENST00000285071	NM_144997.5	60	gCg/gTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29486050	29486050	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1438566555		P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	251	319	1	ENST00000358273.4:c.233del	p.Asn78IlefsTer7	p.N78Ifs*7	ENST00000358273	NM_001042492.2	76	gAa/ga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686901	37686901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	233	457	2	ENST00000447079.4:c.3810del	p.Gly1271AspfsTer23	p.G1271Dfs*23	ENST00000447079	NM_015083.1	1269	Ccc/cc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	215	316	3	ENST00000447079.4:c.4382delG	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866710	37866710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	347	657	2	ENST00000269571.5:c.877G>A	p.Ala293Thr	p.A293T	ENST00000269571		293	Gcc/Acc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489837	40489837	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	278	590	0	ENST00000264657.5:c.589A>G	p.Arg197Gly	p.R197G	ENST00000264657	NM_139276.2	197	Agg/Ggg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244618	41244618	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	205	634	0	ENST00000357654.3:c.2930del	p.Pro977HisfsTer23	p.P977Hfs*23	ENST00000357654	NM_007294.3	977	cCa/ca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435162	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	266	592	0	ENST00000407977.2:c.1975_1976delGG	p.Gly659SerfsTer87	p.G659Sfs*87	ENST00000407977		659	GGt/t																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	323	602	1	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533905	63533905	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	44	403	0	ENST00000307078.5:c.1249delG	p.Ala417ArgfsTer41	p.A417Rfs*41	ENST00000307078	NM_004655.3	417	Gcg/cg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	25	71	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39644789	39644789	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	114	322	0	ENST00000262039.4:c.2522del	p.Lys841ArgfsTer8	p.K841Rfs*8	ENST00000262039	NM_002647.2	840	Aaa/aa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612344	1612344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	330	722	0	ENST00000344749.5:c.1675G>A	p.Val559Met	p.V559M	ENST00000344749	NM_001136139.2	559	Gtg/Atg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223104	5223104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	259	564	0	ENST00000357368.4:c.2699C>T	p.Thr900Met	p.T900M	ENST00000357368	NM_002850.3	900	aCg/aTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10249244	10249244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	255	505	0	ENST00000340748.4:c.3938C>T	p.Ala1313Val	p.A1313V	ENST00000340748		1313	gCc/gTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272337	15272337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs776990686		P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	240	626	5	ENST00000263388.2:c.6102del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2034	ccC/cc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276285	15276285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	83	645	0	ENST00000263388.2:c.5709G>A	p.Met1903Ile	p.M1903I	ENST00000263388	NM_000435.2	1903	atG/atA																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211082	36211082	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	283	726	0	ENST00000222270.7:c.837del	p.Arg280GlyfsTer25	p.R280Gfs*25	ENST00000222270	NM_014727.1	278	aCc/ac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213999	36213999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	301	671	0	ENST00000222270.7:c.2825G>A	p.Gly942Glu	p.G942E	ENST00000222270	NM_014727.1	942	gGa/gAa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	298	637	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	254	576	2	ENST00000575354.2:c.3743delC	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905543	50905543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	285	683	2	ENST00000440232.2:c.671G>A	p.Arg224His	p.R224H	ENST00000440232	NM_002691.3	224	cGc/cAc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	226	577	5	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
ASXL2	55252	MSKCC	GRCh37	2	26022303	26022304	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTG			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	176	545	0	ENST00000435504.4:c.351_353dup	p.Ser118dup	p.S118dup	ENST00000435504		118	agt/agCAGt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026570	48026570	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	67	446	0	ENST00000234420.5:c.1448T>C	p.Val483Ala	p.V483A	ENST00000234420	NM_000179.2	483	gTg/gCg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026881	48026881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	160	516	1	ENST00000234420.5:c.1759G>A	p.Ala587Thr	p.A587T	ENST00000234420	NM_000179.2	587	Gca/Aca																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198262763	198262763	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	42	521	4	ENST00000335508.6:c.3212del	p.Lys1071ArgfsTer28	p.K1071Rfs*28	ENST00000335508	NM_012433.2	1071	aAg/ag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989529	212989529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	180	397	0	ENST00000342788.4:c.182G>A	p.Gly61Asp	p.G61D	ENST00000342788	NM_005235.2	61	gGc/gAc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376297	225376297	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	27	236	0	ENST00000264414.4:c.657G>T	p.Met219Ile	p.M219I	ENST00000264414	NM_003590.4	219	atG/atT																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659793	227659793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	66	400	2	ENST00000305123.5:c.3662G>A	p.Arg1221His	p.R1221H	ENST00000305123	NM_005544.2	1221	cGc/cAc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661381	227661381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	201	574	0	ENST00000305123.5:c.2074G>A	p.Gly692Arg	p.G692R	ENST00000305123	NM_005544.2	692	Ggg/Agg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735533	40735533	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	182	470	0	ENST00000373198.4:c.3340A>G	p.Ile1114Val	p.I1114V	ENST00000373198	NM_133170.3	1114	Att/Gtt																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42861463	42861463	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201949634		P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	270	546	0	ENST00000398585.3:c.407C>T	p.Ala136Val	p.A136V	ENST00000398585	NM_001135099.1	136	gCg/gTg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37038192	37038192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	209	319	0	ENST00000231790.2:c.199G>A	p.Gly67Arg	p.G67R	ENST00000231790	NM_000249.3	67	Ggg/Agg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070349	37070349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1220422495		P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	202	480	0	ENST00000231790.2:c.1489del	p.Arg497GlyfsTer11	p.R497Gfs*11	ENST00000231790	NM_000249.3	495	aCc/ac																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651496	52651496	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	252	508	1	ENST00000394830.3:c.1600C>T	p.Arg534Ter	p.R534*	ENST00000394830	NM_018313.4	534	Cga/Tga																																																																															
MITF	4286	MSKCC	GRCh37	3	70014097	70014097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	217	603	0	ENST00000352241.4:c.1261G>A	p.Val421Ile	p.V421I	ENST00000352241	NM_198159.2	421	Gtt/Att																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670324	134670324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	184	508	0	ENST00000398015.3:c.235C>T	p.Arg79Trp	p.R79W	ENST00000398015	NM_004441.4	79	Cgg/Tgg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	126	518	5	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664761	138664761	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	152	208	0	ENST00000330315.3:c.804del	p.Gly269AlafsTer2	p.G269Afs*2	ENST00000330315	NM_023067.3	268	ccC/cc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664989	138664989	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	93	180	0	ENST00000330315.3:c.576del	p.Lys193SerfsTer78	p.K193Sfs*78	ENST00000330315	NM_023067.3	192	ccC/cc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665498	138665498	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	43	398	0	ENST00000330315.3:c.67A>G	p.Thr23Ala	p.T23A	ENST00000330315	NM_023067.3	23	Aca/Gca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916935	178916935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	145	490	0	ENST00000263967.3:c.322C>T	p.Arg108Cys	p.R108C	ENST00000263967	NM_006218.2	108	Cgt/Tgt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1961213	1961213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	227	459	0	ENST00000382891.5:c.3001G>A	p.Gly1001Arg	p.G1001R	ENST00000382891	NM_133335.3	1001	Ggg/Agg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517817	187517817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	153	360	0	ENST00000441802.2:c.12877C>T	p.His4293Tyr	p.H4293Y	ENST00000441802	NM_005245.3	4293	Cac/Tac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518260	187518260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	138	336	0	ENST00000441802.2:c.12434C>T	p.Thr4145Met	p.T4145M	ENST00000441802	NM_005245.3	4145	aCg/aTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187531029	187531029	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	61	488	0	ENST00000441802.2:c.9994A>G	p.Thr3332Ala	p.T3332A	ENST00000441802	NM_005245.3	3332	Acc/Gcc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	248	535	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931452	131931453	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	94	422	0	ENST00000265335.6:c.2164_2165del	p.Lys722GlyfsTer5	p.K722Gfs*5	ENST00000265335		719	ctAAaa/ctaa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523340	176523341	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	115	607	0	ENST00000292408.4:c.2003_2004del	p.His668ProfsTer3	p.H668Pfs*3	ENST00000292408	NM_213647.1	666	tAC/t																																																																															
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	166	403	2	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180045918	180045920	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTC	CTC	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	116	332	0	ENST00000261937.6:c.2851_2853del	p.Glu951del	p.E951del	ENST00000261937	NM_182925.4	951	GAG/-																																																																															
FLT4	2324	MSKCC	GRCh37	5	180050994	180050994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	164	645	0	ENST00000261937.6:c.1489G>A	p.Ala497Thr	p.A497T	ENST00000261937	NM_182925.4	497	Gcc/Acc																																																																															
IRF4	3662	MSKCC	GRCh37	6	397126	397126	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	81	378	0	ENST00000380956.4:c.511A>G	p.Met171Val	p.M171V	ENST00000380956	NM_001195286.1	171	Atg/Gtg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056425	26056427	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-	rs774779034		P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	108	346	0	ENST00000343677.2:c.230_232del	p.Asn77del	p.N77del	ENST00000343677	NM_005319.3	77	aACAgc/agc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681462	30681463	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	155	532	0	ENST00000376406.3:c.549dup	p.Ser184IlefsTer14	p.S184Ifs*14	ENST00000376406	NM_014641.2	183	-/A																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324221	31324221	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	228	520	0	ENST00000412585.2:c.344-2A>G		p.X115_splice	ENST00000412585	NM_005514.6	115																																																																																
TAP2	6891	MSKCC	GRCh37	6	32805571	32805571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	352	679	1	ENST00000374899.4:c.440C>T	p.Pro147Leu	p.P147L	ENST00000374899	NM_018833.2	147	cCg/cTg																																																																															
LATS1	9113	MSKCC	GRCh37	6	149982867	149982867	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	120	370	0	ENST00000253339.5:c.3391T>C	p.Ter1131GlnextTer5	p.*1131Qext*5	ENST00000253339		1131	Taa/Caa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367244	50367244	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	165	354	0	ENST00000331340.3:c.56del	p.Pro19LeufsTer2	p.P19Lfs*2	ENST00000331340	NM_006060.4	17	agC/ag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249073	55249073	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	51	579	1	ENST00000275493.2:c.2371C>T	p.Gln791Ter	p.Q791*	ENST00000275493	NM_005228.3	791	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268059	55268059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	293	630	1	ENST00000275493.2:c.2899G>A	p.Glu967Lys	p.E967K	ENST00000275493	NM_005228.3	967	Gaa/Aaa																																																																															
SMO	6608	MSKCC	GRCh37	7	128845086	128845086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	317	665	0	ENST00000249373.3:c.580G>A	p.Glu194Lys	p.E194K	ENST00000249373	NM_005631.4	194	Gaa/Aaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151851352	151851352	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	183	465	0	ENST00000262189.6:c.12139del	p.Ser4047ValfsTer36	p.S4047Vfs*36	ENST00000262189	NM_170606.2	4047	Agt/gt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879375	151879377	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	196	524	0	ENST00000262189.6:c.5568_5570del	p.Pro1857del	p.P1857del	ENST00000262189	NM_170606.2	1856	ccTCCa/cca																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38147995	38147995	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	216	524	1	ENST00000317025.8:c.3116del	p.Lys1039ArgfsTer13	p.K1039Rfs*13	ENST00000317025	NM_023034.1	1039	aAg/ag																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285440	38285440	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	60	564	0	ENST00000425967.3:c.713A>G	p.Lys238Arg	p.K238R	ENST00000425967	NM_001174067.1	238	aAg/aGg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372313	55372313	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	53	475	0	ENST00000297316.4:c.1007del	p.Pro336LeufsTer51	p.P336Lfs*51	ENST00000297316	NM_022454.3	335	Ccc/cc																																																																															
MYC	4609	MSKCC	GRCh37	8	128751254	128751254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	45	345	0	ENST00000377970.2:c.791G>A	p.Ser264Asn	p.S264N	ENST00000377970	NM_002467.4	264	aGc/aAc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	282	757	8	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141561511	141561511	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	103	481	2	ENST00000220592.5:c.1294C>T	p.Gln432Ter	p.Q432*	ENST00000220592	NM_012154.3	432	Cag/Tag																																																																															
AGO2	27161	MSKCC	GRCh37	8	141570600	141570600	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	185	433	0	ENST00000220592.5:c.528del	p.Val177TrpfsTer37	p.V177Wfs*37	ENST00000220592	NM_012154.3	176	ccC/cc																																																																															
CD274	29126	MSKCC	GRCh37	9	5456142	5456142	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	62	302	0	ENST00000381577.3:c.29T>C	p.Met10Thr	p.M10T	ENST00000381577	NM_014143.3	10	aTg/aCg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389407	8389407	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	44	337	0	ENST00000356435.5:c.4211G>T	p.Gly1404Val	p.G1404V	ENST00000356435		1404	gGg/gTg																																																																															
TEK	7010	MSKCC	GRCh37	9	27213538	27213538	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	201	602	0	ENST00000380036.4:c.2938del	p.Ile980Ter	p.I980*	ENST00000380036	NM_000459.3	978	gcA/gc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391799	139391799	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	227	582	3	ENST00000277541.6:c.6392delG	p.Gly2131AlafsTer117	p.G2131Afs*117	ENST00000277541	NM_017617.3	2131	gGc/gc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399488	139399488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	303	585	0	ENST00000277541.6:c.4655C>T	p.Ala1552Val	p.A1552V	ENST00000277541	NM_017617.3	1552	gCg/gTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399937	139399937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	361	670	0	ENST00000277541.6:c.4411G>A	p.Ala1471Thr	p.A1471T	ENST00000277541	NM_017617.3	1471	Gcg/Acg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417607	139417607	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	261	690	0	ENST00000277541.6:c.437C>A	p.Ser146Tyr	p.S146Y	ENST00000277541	NM_017617.3	146	tCc/tAc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139794066	139794066	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	128	642	1	ENST00000247668.2:c.209C>A	p.Ala70Asp	p.A70D	ENST00000247668	NM_021138.3	70	gCt/gAt																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814962	139814962	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	224	444	0	ENST00000247668.2:c.955A>G	p.Ser319Gly	p.S319G	ENST00000247668	NM_021138.3	319	Agc/Ggc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47004894	47004894	+	intron_variant	Intron	SNP	G	G	A			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	223	430	0	ENST00000377604.3:c.-126+10G>A		p.*42*	ENST00000377604	NM_001204468.1	42																																																																																
MED12	9968	MSKCC	GRCh37	X	70357642	70357642	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	245	720	1	ENST00000374080.3:c.5898del	p.Ser1967AlafsTer19	p.S1967Afs*19	ENST00000374080		1965	Ccc/cc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	138	454	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	46	371	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	246	521	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	89	498	5	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																															
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	93	432	2	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968266	2968266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	151	647	0	ENST00000396946.4:c.1720G>A	p.Val574Ile	p.V574I	ENST00000396946	NM_032415.4	574	Gtc/Atc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073804	8073804	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	32	296	1	ENST00000377482.5:c.855del	p.Arg286GlufsTer9	p.R286Efs*9	ENST00000377482	NM_018948.3	285	ccC/cc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739109	40739109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	43	501	0	ENST00000373198.4:c.3175C>T	p.Arg1059Trp	p.R1059W	ENST00000373198	NM_133170.3	1059	Cgg/Tgg																																																																															
CASP8	841	MSKCC	GRCh37	2	202137360	202137360	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	53	354	0	ENST00000358485.4:c.589-1G>T		p.X197_splice	ENST00000358485	NM_001080125.1	197																																																																																
SDHB	6390	MSKCC	GRCh37	1	17354304	17354306	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	70	449	0	ENST00000375499.3:c.478_480del	p.Lys160del	p.K160del	ENST00000375499	NM_003000.2	160	AAG/-																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213243	39213243	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	153	823	4	ENST00000402219.2:c.3724del	p.Ser1242ValfsTer37	p.S1242Vfs*37	ENST00000402219	NM_005633.3	1242	Agt/gt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141572597	141572597	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376660302		P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1928	123	541	0	ENST00000220592.5:c.473C>T	p.Thr158Met	p.T158M	ENST00000220592	NM_012154.3	158	aCg/aTg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88677064	88677064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	98	526	0	ENST00000372037.3:c.849G>A	p.Met283Ile	p.M283I	ENST00000372037	NM_004329.2	283	atG/atA																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589791	69589791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	26	32	2	ENST00000168712.1:c.62C>T	p.Ala21Val	p.A21V	ENST00000168712	NM_002007.2	21	gCg/gTg																																																																															
ATM	472	MSKCC	GRCh37	11	108142124	108142124	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	57	431	0	ENST00000278616.4:c.3068G>T	p.Gly1023Val	p.G1023V	ENST00000278616	NM_000051.3	1023	gGa/gTa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500606	99500606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	50	394	0	ENST00000268035.6:c.4039G>A	p.Ala1347Thr	p.A1347T	ENST00000268035	NM_000875.3	1347	Gcc/Acc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832455	72832455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	25	378	0	ENST00000268489.5:c.4126G>A	p.Ala1376Thr	p.A1376T	ENST00000268489	NM_006885.3	1376	Gcc/Acc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991926	72991926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	102	492	0	ENST00000268489.5:c.2119G>A	p.Gly707Arg	p.G707R	ENST00000268489	NM_006885.3	707	Ggg/Agg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085821	16085821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	65	538	0	ENST00000281043.3:c.997G>A	p.Ala333Thr	p.A333T	ENST00000281043	NM_005378.4	333	Gcc/Acc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629406	187629406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	132	713	1	ENST00000441802.2:c.1576G>T	p.Asp526Tyr	p.D526Y	ENST00000441802	NM_005245.3	526	Gac/Tac																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778195	27778195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	85	623	0	ENST00000369163.2:c.344C>T	p.Ala115Val	p.A115V	ENST00000369163	NM_003536.2	115	gCc/gTc																																																																															
FYN	2534	MSKCC	GRCh37	6	112041014	112041014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	68	371	1	ENST00000368678.4:c.241G>A	p.Gly81Arg	p.G81R	ENST00000368678		81	Gga/Aga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240773	55240773	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	72	757	0	ENST00000275493.2:c.2017A>G	p.Ile673Val	p.I673V	ENST00000275493	NM_005228.3	673	Atc/Gtc																																																																															
SMO	6608	MSKCC	GRCh37	7	128846323	128846323	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	79	587	0	ENST00000249373.3:c.1159A>G	p.Ser387Gly	p.S387G	ENST00000249373	NM_005631.4	387	Agt/Ggt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151848067	151848067	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	44	315	0	ENST00000262189.6:c.12692T>C	p.Val4231Ala	p.V4231A	ENST00000262189	NM_170606.2	4231	gTa/gCa																																																																															
ABL1	25	MSKCC	GRCh37	9	133759564	133759564	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	86	697	0	ENST00000318560.5:c.1887G>T	p.Glu629Asp	p.E629D	ENST00000318560	NM_005157.4	629	gaG/gaT																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251243	99251243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	140	491	0	ENST00000268035.6:c.547C>T	p.Pro183Ser	p.P183S	ENST00000268035	NM_000875.3	183	Cca/Tca																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45651316	45651316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	51	457	0	ENST00000407780.3:c.709G>A	p.Gly237Arg	p.G237R	ENST00000407780	NM_001283052.1	237	Gga/Aga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs397516896		P-0029943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	104	311	0	ENST00000288602.6:c.1780G>C	p.Asp594His	p.D594H	ENST00000288602	NM_004333.4	594	Gat/Cat																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63819019	63819019	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	32	239	0	ENST00000279873.7:c.1066T>G	p.Phe356Val	p.F356V	ENST00000279873	NM_032199.2	356	Ttt/Gtt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627731	37627731	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	324	577	0	ENST00000447079.4:c.1646C>G	p.Pro549Arg	p.P549R	ENST00000447079	NM_015083.1	549	cCc/cGc																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793308	33793308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	38	103	0	ENST00000498907.2:c.13G>A	p.Asp5Asn	p.D5N	ENST00000498907	NM_004364.3	5	Gac/Aac																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024264	31024271	+	frameshift_variant	Frame_Shift_Del	DEL	CACAGGAC	CACAGGAC	-			P-0029943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	60	486	0	ENST00000375687.4:c.3749_3756del	p.Ser1250Ter	p.S1250*	ENST00000375687	NM_015338.5	1250	tCACAGGAC/t																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41514570	41514570	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0029943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	160	301	0	ENST00000373198.4:c.91G>T	p.Gly31Cys	p.G31C	ENST00000373198	NM_133170.3	31	Ggc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874952	151874952	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0029943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	29	246	0	ENST00000262189.6:c.7586C>G	p.Ser2529Ter	p.S2529*	ENST00000262189	NM_170606.2	2529	tCa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	624	337	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675622	86675622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	82	313	0	ENST00000274376.6:c.2558C>T	p.Ser853Leu	p.S853L	ENST00000274376	NM_002890.2	853	tCa/tTa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61720134	61720134	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	93	388	0	ENST00000401558.2:c.1300G>C	p.Glu434Gln	p.E434Q	ENST00000401558	NM_003400.3	434	Gag/Cag																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66735666	66735666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	94	346	0	ENST00000307102.5:c.487G>A	p.Glu163Lys	p.E163K	ENST00000307102	NM_002755.3	163	Gaa/Aaa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031997	26031997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	70	264	0	ENST00000244661.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000244661	NM_003537.3	98	Gag/Aag																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27777996	27777996	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	104	286	0	ENST00000369163.2:c.145C>G	p.Leu49Val	p.L49V	ENST00000369163	NM_003536.2	49	Ctc/Gtc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45795017	45795017	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	116	431	0	ENST00000372115.3:c.1569C>G	p.Ile523Met	p.I523M	ENST00000372115	NM_001048171.1	523	atC/atG																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115284252	115284252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	93	398	1	ENST00000438362.2:c.34C>T	p.His12Tyr	p.H12Y	ENST00000438362	NM_001242891.1	12	Cat/Tat																																																																															
LMO1	4004	MSKCC	GRCh37	11	8251992	8251992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	433	530	2	ENST00000335790.3:c.85C>A	p.Arg29Ser	p.R29S	ENST00000335790	NM_002315.2	29	Cgc/Agc																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514302	69514302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	324	462	0	ENST00000294312.3:c.379C>A	p.Arg127Ser	p.R127S	ENST00000294312	NM_005117.2	127	Cgc/Agc																																																																															
PGR	5241	MSKCC	GRCh37	11	100962529	100962529	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	314	373	0	ENST00000325455.5:c.1868G>T	p.Arg623Leu	p.R623L	ENST00000325455	NM_001202474.3	623	cGc/cTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424087	49424087	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	684	641	0	ENST00000301067.7:c.13975C>G	p.Arg4659Gly	p.R4659G	ENST00000301067	NM_003482.3	4659	Cgg/Ggg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435766	110435766	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	26	117	0	ENST00000375856.3:c.2635G>C	p.Gly879Arg	p.G879R	ENST00000375856	NM_003749.2	879	Ggc/Cgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42000362	42000363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	275	342	0	ENST00000219905.7:c.2381_2382insTT	p.Trp795TyrfsTer23	p.W795Yfs*23	ENST00000219905	NM_001164273.1	794	gga/ggTTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577125	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	415	543	1	ENST00000269305.4:c.813_814delinsTT	p.Glu271_Val272delinsAspLeu	p.E271_V272delinsDL	ENST00000269305	NM_001126112.2	271	gaGGtg/gaTTtg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15952254	15952254	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	441	451	0	ENST00000268712.3:c.6441C>A	p.Tyr2147Ter	p.Y2147*	ENST00000268712	NM_006311.3	2147	taC/taA																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288885	15288885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	54	208	0	ENST00000263388.2:c.3854G>A	p.Arg1285His	p.R1285H	ENST00000263388	NM_000435.2	1285	cGt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210796	36210796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	194	668	0	ENST00000222270.7:c.547G>A	p.Glu183Lys	p.E183K	ENST00000222270	NM_014727.1	183	Gag/Aag																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31376719	31376719	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	232	300	0	ENST00000328111.2:c.714G>T	p.Trp238Cys	p.W238C	ENST00000328111	NM_006892.3	238	tgG/tgT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101188	41101188	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	185	420	0	ENST00000373198.4:c.1168C>A	p.Pro390Thr	p.P390T	ENST00000373198	NM_133170.3	390	Cca/Aca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101197	41101197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	205	406	0	ENST00000373198.4:c.1159G>T	p.Val387Leu	p.V387L	ENST00000373198	NM_133170.3	387	Gta/Tta																																																																															
RHOA	387	MSKCC	GRCh37	3	49405870	49405870	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	141	434	0	ENST00000418115.1:c.268G>C	p.Asp90His	p.D90H	ENST00000418115	NM_001664.2	90	Gat/Cat																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119634978	119634978	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	65	264	0	ENST00000316626.5:c.521C>A	p.Ser174Tyr	p.S174Y	ENST00000316626		174	tCc/tAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670721	134670721	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	213	422	0	ENST00000398015.3:c.632C>A	p.Thr211Lys	p.T211K	ENST00000398015	NM_004441.4	211	aCa/aAa																																																																															
ATR	545	MSKCC	GRCh37	3	142188406	142188406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	61	298	0	ENST00000350721.4:c.6325C>T	p.Arg2109Cys	p.R2109C	ENST00000350721	NM_001184.3	2109	Cgc/Tgc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467698	66467698	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	155	291	0	ENST00000273854.3:c.571C>G	p.Arg191Gly	p.R191G	ENST00000273854	NM_004439.5	191	Cgt/Ggt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153253754	153253754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	142	251	0	ENST00000281708.4:c.979G>A	p.Glu327Lys	p.E327K	ENST00000281708	NM_033632.3	327	Gaa/Aaa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517454	176517461	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTGCGT	CTGTGCGT	-			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	284	507	0	ENST00000292408.4:c.161_168del	p.Arg54LeufsTer5	p.R54Lfs*5	ENST00000292408	NM_213647.1	52	cCTGTGCGT/c																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341782	8341782	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	234	470	0	ENST00000356435.5:c.4858G>C	p.Val1620Leu	p.V1620L	ENST00000356435		1620	Gtg/Ctg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413103	63413103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	265	484	1	ENST00000330258.3:c.64G>A	p.Glu22Lys	p.E22K	ENST00000330258	NM_152424.3	22	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	204	435	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207065	1207065	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	314	726	1	ENST00000326873.7:c.157delG	p.Asp53ThrfsTer11	p.D53Tfs*11	ENST00000326873	NM_000455.4	51	atG/at																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245316	46245316	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	207	418	0	ENST00000334344.6:c.3410C>A	p.Ser1137Ter	p.S1137*	ENST00000334344	NM_152641.2	1137	tCa/tAa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119075	70119075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	178	410	0	ENST00000245479.2:c.647C>A	p.Ser216Tyr	p.S216Y	ENST00000245479	NM_000346.3	216	tCc/tAc																																																																															
XIAP	331	MSKCC	GRCh37	X	123020205	123020205	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	130	572	1	ENST00000355640.3:c.693G>T	p.Leu231Phe	p.L231F	ENST00000355640		231	ttG/ttT																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430019	78430019	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	19	292	0	ENST00000370768.2:c.860T>G	p.Val287Gly	p.V287G	ENST00000370768	NM_003902.3	287	gTt/gGt																																																																															
RET	5979	MSKCC	GRCh37	10	43623712	43623712	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	180	420	0	ENST00000355710.3:c.3340A>C	p.Ser1114Arg	p.S1114R	ENST00000355710	NM_020975.4	1114	Agt/Cgt																																																																															
ATM	472	MSKCC	GRCh37	11	108141987	108141987	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	237	439	0	ENST00000278616.4:c.2931T>G	p.Cys977Trp	p.C977W	ENST00000278616	NM_000051.3	977	tgT/tgG																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871173	12871173	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	117	245	0	ENST00000228872.4:c.400A>T	p.Lys134Ter	p.K134*	ENST00000228872	NM_004064.3	134	Aag/Tag																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562533	95562534	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	324	343	0	ENST00000343455.3:c.4723_4724delinsTT	p.Gly1575Leu	p.G1575L	ENST00000343455	NM_177438.2	1575	GGg/TTg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213251	39213251	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	319	687	1	ENST00000402219.2:c.3716G>T	p.Gly1239Val	p.G1239V	ENST00000402219	NM_005633.3	1239	gGc/gTc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39278291	39278291	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	277	489	0	ENST00000402219.2:c.858A>T	p.Leu286Phe	p.L286F	ENST00000402219	NM_005633.3	286	ttA/ttT																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99189287	99189287	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	183	356	0	ENST00000074304.5:c.2544del	p.Ser849LeufsTer58	p.S849Lfs*58	ENST00000074304	NM_001134224.1	848	cGg/cg																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27840057	27840057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	167	301	0	ENST00000328488.2:c.37G>A	p.Gly13Ser	p.G13S	ENST00000328488	NM_003533.2	13	Ggc/Agc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157525130	157525130	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	52	173	0	ENST00000346085.5:c.5025G>T	p.Gln1675His	p.Q1675H	ENST00000346085	NM_020732.3	1675	caG/caT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	969	415	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	118	412	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259011	89259011	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	70	176	0	ENST00000336596.2:c.157del	p.Glu53LysfsTer30	p.E53Kfs*30	ENST00000336596	NM_005233.5	52	tGg/tg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410853	63410853	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	145	557	0	ENST00000330258.3:c.2314G>T	p.Ala772Ser	p.A772S	ENST00000330258	NM_152424.3	772	Gcc/Tcc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533123	63533123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	254	538	0	ENST00000307078.5:c.1771G>T	p.Ala591Ser	p.A591S	ENST00000307078	NM_004655.3	591	Gcc/Tcc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18800901	18800901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	336	409	0	ENST00000266497.5:c.4277G>A	p.Arg1426Gln	p.R1426Q	ENST00000266497		1426	cGa/cAa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462005	120462005	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	261	414	0	ENST00000256646.2:c.5711A>G	p.Asn1904Ser	p.N1904S	ENST00000256646	NM_024408.3	1904	aAt/aGt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243809292	243809292	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	114	414	0	ENST00000263826.5:c.332G>T	p.Arg111Met	p.R111M	ENST00000263826	NM_005465.4	111	aGg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	320	603	0	ENST00000269305.4:c.902_903insT	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccTa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10248588	10248588	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	295	586	0	ENST00000340748.4:c.4165A>T	p.Asn1389Tyr	p.N1389Y	ENST00000340748		1389	Aac/Tac																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906760	50906760	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201654210		P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	297	595	0	ENST00000440232.2:c.1148C>T	p.Thr383Ile	p.T383I	ENST00000440232	NM_002691.3	383	aCc/aTc																																																																															
BARD1	580	MSKCC	GRCh37	2	215674222	215674222	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	132	557	2	ENST00000260947.4:c.72del	p.Ala25ProfsTer33	p.A25Pfs*33	ENST00000260947	NM_000465.2	24	ccC/cc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978364	2978364	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	344	556	0	ENST00000396946.4:c.966G>T	p.Arg322Ser	p.R322S	ENST00000396946	NM_032415.4	322	agG/agT																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980609	70980609	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	284	555	0	ENST00000276594.2:c.768G>T	p.Met256Ile	p.M256I	ENST00000276594	NM_024504.3	256	atG/atT																																																																															
ATRX	546	MSKCC	GRCh37	X	76939766	76939766	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	140	566	0	ENST00000373344.5:c.982G>C	p.Glu328Gln	p.E328Q	ENST00000373344	NM_000489.3	328	Gaa/Caa																																																																															
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	26	391	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	154	414	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602532	10602532	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	193	539	0	ENST00000171111.5:c.1046A>G	p.Asp349Gly	p.D349G	ENST00000171111	NM_203500.1	349	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578183	7578210	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCTCATAGGGCACCACCACACTATGT	CGGCTCATAGGGCACCACCACACTATGT	-			P-0029976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	390	640	0	ENST00000269305.4:c.639_666del	p.His214LeufsTer24	p.H214Lfs*24	ENST00000269305	NM_001126112.2	213	cgACATAGTGTGGTGGTGCCCTATGAGCCG/cg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584651	187584651	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	75	514	0	ENST00000441802.2:c.3382G>C	p.Glu1128Gln	p.E1128Q	ENST00000441802	NM_005245.3	1128	Gag/Cag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057230	180057230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	100	619	0	ENST00000261937.6:c.508C>T	p.Arg170Cys	p.R170C	ENST00000261937	NM_182925.4	170	Cgc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	213	604	0	ENST00000326873.7:c.842dup	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggCc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069931	5069931	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	32	256	0	ENST00000381652.3:c.1520C>G	p.Ser507Ter	p.S507*	ENST00000381652	NM_004972.3	507	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	409	499	0	ENST00000269305.4:c.375+1delG		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
MTOR	2475	MSKCC	GRCh37	1	11187726	11187726	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	118	565	0	ENST00000361445.4:c.6171G>C	p.Met2057Ile	p.M2057I	ENST00000361445	NM_004958.3	2057	atG/atC																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518564	69518564	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	60	339	0	ENST00000294312.3:c.81C>G	p.Phe27Leu	p.F27L	ENST00000294312	NM_005117.2	27	ttC/ttG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435131	49435131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	180	504	1	ENST00000301067.7:c.6422G>T	p.Gly2141Val	p.G2141V	ENST00000301067	NM_003482.3	2141	gGg/gTg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56488249	56488249	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	92	514	0	ENST00000267101.3:c.1768C>G	p.Pro590Ala	p.P590A	ENST00000267101	NM_001982.3	590	Ccc/Gcc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641276	3641276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	168	637	0	ENST00000294008.3:c.2363A>G	p.Gln788Arg	p.Q788R	ENST00000294008	NM_032444.2	788	cAg/cGg																																																																															
NF1	4763	MSKCC	GRCh37	17	29509623	29509623	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	106	536	1	ENST00000358273.4:c.828G>T	p.Leu276Phe	p.L276F	ENST00000358273	NM_001042492.2	276	ttG/ttT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602480	10602505	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCAGGCCGCTCCGCGGCACCTGCA	GGCCAGGCCGCTCCGCGGCACCTGCA	-			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	246	504	0	ENST00000171111.5:c.1073_1098del	p.Leu358ArgfsTer48	p.L358Rfs*48	ENST00000171111	NM_203500.1	358	cTGCAGGTGCCGCGGAGCGGCCTGGCC/c																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135095	11135095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	275	669	0	ENST00000344626.4:c.3062G>A	p.Gly1021Asp	p.G1021D	ENST00000344626	NM_003072.3	1021	gGc/gAc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096626	178096626	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	71	270	0	ENST00000397062.3:c.705G>T	p.Met235Ile	p.M235I	ENST00000397062	NM_006164.4	235	atG/atT																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384639	31384639	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	296	592	0	ENST00000328111.2:c.1343del	p.Pro448LeufsTer142	p.P448Lfs*142	ENST00000328111	NM_006892.3	447	caC/ca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557193	187557193	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	100	356	0	ENST00000441802.2:c.4169G>C	p.Trp1390Ser	p.W1390S	ENST00000441802	NM_005245.3	1390	tGg/tCg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176722053	176722053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	68	361	0	ENST00000439151.2:c.7684G>A	p.Gly2562Arg	p.G2562R	ENST00000439151	NM_022455.4	2562	Ggg/Agg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797305	32797305	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	96	550	0	ENST00000374899.4:c.1804G>C	p.Glu602Gln	p.E602Q	ENST00000374899	NM_018833.2	602	Gag/Cag																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202236	138202236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	102	455	0	ENST00000237289.4:c.2153G>A	p.Arg718Gln	p.R718Q	ENST00000237289	NM_001270507.1	718	cGg/cAg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148506483	148506483	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	93	192	0	ENST00000320356.2:c.2030-1G>T		p.X677_splice	ENST00000320356	NM_004456.4	677																																																																																
PRDM14	63978	MSKCC	GRCh37	8	70978602	70978602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	104	601	0	ENST00000276594.2:c.1051G>A	p.Glu351Lys	p.E351K	ENST00000276594	NM_024504.3	351	Gag/Aag																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128348003	128348003	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	114	538	0	ENST00000265960.3:c.502C>A	p.His168Asn	p.H168N	ENST00000265960	NM_001006617.1	168	Cat/Aat																																																																															
ATRX	546	MSKCC	GRCh37	X	76912126	76912126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	57	171	0	ENST00000373344.5:c.4138G>A	p.Glu1380Lys	p.E1380K	ENST00000373344	NM_000489.3	1380	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	128	592	2	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105520	27105520	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	31	273	2	ENST00000324856.7:c.5131G>T	p.Gly1711Trp	p.G1711W	ENST00000324856	NM_006015.4	1711	Ggg/Tgg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28607257	28607257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	160	402	0	ENST00000253063.3:c.1387C>T	p.Arg463Cys	p.R463C	ENST00000253063	NM_031459.4	463	Cgc/Tgc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933563	36933563	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	48	516	1	ENST00000361632.4:c.1724C>T	p.Ser575Phe	p.S575F	ENST00000361632		575	tCc/tTc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798458	45798458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	191	552	2	ENST00000372115.3:c.511C>T	p.Arg171Trp	p.R171W	ENST00000372115	NM_001048171.1	171	Cgg/Tgg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72058500	72058500	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	62	284	0	ENST00000357731.5:c.940C>A	p.Pro314Thr	p.P314T	ENST00000357731	NM_173808.2	314	Cct/Act																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115275252	115275252	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	46	401	2	ENST00000438362.2:c.1161del	p.Gln388SerfsTer11	p.Q388Sfs*11	ENST00000438362	NM_001242891.1	387	ttT/tt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466515	120466515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	184	404	1	ENST00000256646.2:c.4604C>T	p.Ala1535Val	p.A1535V	ENST00000256646	NM_024408.3	1535	gCt/gTt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175957464	175957465	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	145	395	1	ENST00000367669.3:c.1931dup	p.Asn644LysfsTer17	p.N644Kfs*17	ENST00000367669	NM_022457.5	644	aac/aaAc																																																																															
FH	2271	MSKCC	GRCh37	1	241680594	241680594	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	127	351	0	ENST00000366560.3:c.155T>C	p.Ile52Thr	p.I52T	ENST00000366560	NM_000143.3	52	aTa/aCa																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649922	88649922	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	146	415	0	ENST00000372037.3:c.176del	p.Leu59Ter	p.L59*	ENST00000372037	NM_004329.2	57	ccT/cc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	47	221	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572198	64572198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	85	241	2	ENST00000337652.1:c.1456C>T	p.Arg486Trp	p.R486W	ENST00000337652	NM_130803.2	486	Cgg/Tgg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	150	554	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
ATM	472	MSKCC	GRCh37	11	108199881	108199881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	99	266	1	ENST00000278616.4:c.7223C>T	p.Ser2408Leu	p.S2408L	ENST00000278616	NM_000051.3	2408	tCg/tTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	180	500	1	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
KDM5A	5927	MSKCC	GRCh37	12	442811	442811	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	212	322	0	ENST00000399788.2:c.1495del	p.Glu499SerfsTer19	p.E499Sfs*19	ENST00000399788	NM_001042603.1	499	Gag/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	253	384	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420859	49420859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	179	464	0	ENST00000301067.7:c.14890C>T	p.Arg4964Cys	p.R4964C	ENST00000301067	NM_003482.3	4964	Cgt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435119	49435119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	143	419	0	ENST00000301067.7:c.6434C>T	p.Pro2145Leu	p.P2145L	ENST00000301067	NM_003482.3	2145	cCg/cTg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	273	539	5	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133209086	133209086	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	82	362	0	ENST00000320574.5:c.6145A>G	p.Thr2049Ala	p.T2049A	ENST00000320574	NM_006231.2	2049	Acc/Gcc																																																																															
POLE	5426	MSKCC	GRCh37	12	133219113	133219113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	179	540	0	ENST00000320574.5:c.4931C>T	p.Ser1644Leu	p.S1644L	ENST00000320574	NM_006231.2	1644	tCg/tTg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26911760	26911760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	100	318	1	ENST00000381527.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000381527	NM_001260.1	62	tCg/tTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434683	110434683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	202	449	0	ENST00000375856.3:c.3718C>T	p.Arg1240Cys	p.R1240C	ENST00000375856	NM_003749.2	1240	Cgc/Tgc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060686	38060686	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780579934		P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	138	610	0	ENST00000250448.2:c.1303G>A	p.Ala435Thr	p.A435T	ENST00000250448	NM_004496.3	435	Gcc/Acc																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	136	459	0	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647028	23647028	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	40	560	0	ENST00000261584.4:c.839del	p.Asn280ThrfsTer8	p.N280Tfs*8	ENST00000261584	NM_024675.3	280	aAc/ac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992483	72992483	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	129	631	1	ENST00000268489.5:c.1562delA	p.Lys521ArgfsTer15	p.K521Rfs*15	ENST00000268489	NM_006885.3	521	aAg/ag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357135	89357135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	182	453	0	ENST00000301030.4:c.499C>T	p.Arg167Cys	p.R167C	ENST00000301030	NM_001256183.1	167	Cgt/Tgt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805041	89805041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	205	509	1	ENST00000389301.3:c.4336G>A	p.Ala1446Thr	p.A1446T	ENST00000389301	NM_000135.2	1446	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	431	518	3	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30320963	30320963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	186	492	1	ENST00000322652.5:c.1373G>A	p.Arg458His	p.R458H	ENST00000322652	NM_015355.2	458	cGc/cAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	222	514	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	194	646	4	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804188	46804190	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	215	512	0	ENST00000290295.7:c.817_819del	p.Lys273del	p.K273del	ENST00000290295	NM_006361.5	273	AAG/-																																																																															
RNF43	54894	MSKCC	GRCh37	17	56434861	56434861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	48	436	0	ENST00000407977.2:c.2276A>G	p.Tyr759Cys	p.Y759C	ENST00000407977		759	tAt/tGt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	156	457	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435168	56435168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	113	442	1	ENST00000407977.2:c.1969C>T	p.Arg657Trp	p.R657W	ENST00000407977		657	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	179	506	0	ENST00000407977.2:c.349delC	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740809	58740809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	180	405	0	ENST00000305921.3:c.1714C>T	p.Arg572Ter	p.R572*	ENST00000305921	NM_003620.3	572	Cga/Tga																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763508	59763508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	101	371	0	ENST00000259008.2:c.2594G>A	p.Arg865Gln	p.R865Q	ENST00000259008	NM_032043.2	865	cGg/cAg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59876602	59876602	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	171	385	0	ENST00000259008.2:c.1199A>C	p.Asp400Ala	p.D400A	ENST00000259008	NM_032043.2	400	gAc/gCc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39593518	39593518	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	48	306	0	ENST00000262039.4:c.1286del	p.Asn429MetfsTer7	p.N429Mfs*7	ENST00000262039	NM_002647.2	428	gAa/ga																																																																															
TCF3	6929	MSKCC	GRCh37	19	1627411	1627411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	212	565	2	ENST00000344749.5:c.313C>T	p.Arg105Trp	p.R105W	ENST00000344749	NM_001136139.2	105	Cgg/Tgg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222418	2222418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	146	385	1	ENST00000398665.3:c.3250C>T	p.Arg1084Cys	p.R1084C	ENST00000398665	NM_032482.2	1084	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210796	5210796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	172	460	0	ENST00000357368.4:c.5255C>T	p.Ala1752Val	p.A1752V	ENST00000357368	NM_002850.3	1752	gCg/gTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10270519	10270519	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	174	488	0	ENST00000340748.4:c.1121C>T	p.Ala374Val	p.A374V	ENST00000340748		374	gCg/gTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302830	15302830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	247	613	1	ENST00000263388.2:c.620G>A	p.Arg207His	p.R207H	ENST00000263388	NM_000435.2	207	cGt/cAt																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257890	19257890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	246	641	1	ENST00000162023.5:c.496C>T	p.Arg166Cys	p.R166C	ENST00000162023		166	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	205	719	7	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218480	36218480	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	87	454	0	ENST00000222270.7:c.4259T>G	p.Leu1420Arg	p.L1420R	ENST00000222270	NM_014727.1	1420	cTg/cGg																																																																															
AKT2	208	MSKCC	GRCh37	19	40740959	40740960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	211	617	0	ENST00000392038.2:c.1358dup	p.Asp454Ter	p.D454*	ENST00000392038	NM_001626.4	453	cct/ccCt																																																																															
RRAS	6237	MSKCC	GRCh37	19	50139919	50139919	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	246	649	0	ENST00000246792.3:c.410T>C	p.Val137Ala	p.V137A	ENST00000246792	NM_006270.3	137	gTt/gCt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	132	490	1	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
MYCN	4613	MSKCC	GRCh37	2	16082761	16082761	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	28	73	0	ENST00000281043.3:c.575T>A	p.Val192Asp	p.V192D	ENST00000281043	NM_005378.4	192	gTc/gAc																																																																															
INHA	3623	MSKCC	GRCh37	2	220437222	220437223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	176	686	0	ENST00000243786.2:c.132dup	p.Ala45ArgfsTer29	p.A45Rfs*29	ENST00000243786	NM_002191.3	42	-/C																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660879	227660879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	168	371	0	ENST00000305123.5:c.2576C>T	p.Thr859Met	p.T859M	ENST00000305123	NM_005544.2	859	aCg/aTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661836	227661836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	221	580	0	ENST00000305123.5:c.1619C>T	p.Pro540Leu	p.P540L	ENST00000305123	NM_005544.2	540	cCg/cTg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39750723	39750723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	105	291	0	ENST00000361337.2:c.2123G>A	p.Arg708Gln	p.R708Q	ENST00000361337	NM_003286.2	708	cGa/cAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743943	40743943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	30	332	2	ENST00000373198.4:c.3052C>T	p.Arg1018Ter	p.R1018*	ENST00000373198	NM_133170.3	1018	Cga/Tga																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513282	44513287	+	inframe_deletion	In_Frame_Del	DEL	CCACCG	CCACCG	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	175	546	0	ENST00000291552.4:c.648_653delCGGTGG	p.Gly222_Gly223del	p.G222_G223del	ENST00000291552	NM_006758.2	216	ggCGGTGGt/ggt																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288333	21288333	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	200	555	0	ENST00000354336.3:c.578G>T	p.Arg193Met	p.R193M	ENST00000354336	NM_005207.3	193	aGg/aTg																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22221726	22221726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	11	20	0	ENST00000215832.6:c.5C>T	p.Ala2Val	p.A2V	ENST00000215832	NM_002745.4	2	gCg/gTg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24158966	24158966	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	155	452	0	ENST00000263121.7:c.638T>C	p.Met213Thr	p.M213T	ENST00000263121	NM_003073.3	213	aTg/aCg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130561	29130561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	154	434	0	ENST00000328354.6:c.149G>A	p.Ser50Asn	p.S50N	ENST00000328354	NM_007194.3	50	aGc/aAc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	227	294	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41279558	41279558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	136	361	0	ENST00000349496.5:c.2128C>T	p.Arg710Cys	p.R710C	ENST00000349496	NM_001904.3	710	Cgc/Tgc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52661290	52661290	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	30	286	0	ENST00000394830.3:c.1540del	p.Ser514ValfsTer5	p.S514Vfs*5	ENST00000394830	NM_018313.4	514	Agt/gt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	97	359	1	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	60	215	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
BCL6	604	MSKCC	GRCh37	3	187451328	187451328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	113	233	1	ENST00000232014.4:c.154G>A	p.Ala52Thr	p.A52T	ENST00000232014	NM_001130845.1	52	Gcc/Acc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1941480	1941482	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	143	384	0	ENST00000382891.5:c.1858_1860del	p.Ser620del	p.S620del	ENST00000382891	NM_133335.3	619	cCTTct/cct																																																																															
TET2	54790	MSKCC	GRCh37	4	106182961	106182961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	32	315	1	ENST00000380013.4:c.4000G>A	p.Ala1334Thr	p.A1334T	ENST00000380013	NM_001127208.2	1334	Gca/Aca																																																																															
TET2	54790	MSKCC	GRCh37	4	106197552	106197552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	38	310	0	ENST00000380013.4:c.5885C>A	p.Pro1962His	p.P1962H	ENST00000380013	NM_001127208.2	1962	cCc/cAc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143181693	143181693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	41	332	0	ENST00000262992.4:c.640G>A	p.Ala214Thr	p.A214T	ENST00000262992	NM_001101669.1	214	Gcc/Acc																																																																															
MSH3	4437	MSKCC	GRCh37	5	80057492	80057492	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	18	239	0	ENST00000265081.6:c.1896del	p.Lys632AsnfsTer9	p.K632Nfs*9	ENST00000265081	NM_002439.4	631	Aaa/aa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460436	149460436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	199	494	1	ENST00000286301.3:c.201C>A	p.Ser67Arg	p.S67R	ENST00000286301	NM_005211.3	67	agC/agA																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522651	176522651	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138800021		P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	244	586	2	ENST00000292408.4:c.1748C>T	p.Pro583Leu	p.P583L	ENST00000292408	NM_213647.1	583	cCg/cTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562199	176562199	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	181	538	0	ENST00000439151.2:c.95T>G	p.Phe32Cys	p.F32C	ENST00000439151	NM_022455.4	32	tTc/tGc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638803	176638803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	230	527	0	ENST00000439151.2:c.3403C>T	p.Pro1135Ser	p.P1135S	ENST00000439151	NM_022455.4	1135	Cca/Tca																																																																															
IRF4	3662	MSKCC	GRCh37	6	405044	405044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	28	316	0	ENST00000380956.4:c.1126C>T	p.Arg376Cys	p.R376C	ENST00000380956	NM_001195286.1	376	Cgc/Tgc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673000	30673000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	116	665	0	ENST00000376406.3:c.3960G>T	p.Lys1320Asn	p.K1320N	ENST00000376406	NM_014641.2	1320	aaG/aaT																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31322882	31322882	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	283	450	1	ENST00000412585.2:c.1012+2T>C		p.X338_splice	ENST00000412585	NM_005514.6	338																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32181463	32181463	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	32	471	0	ENST00000375023.3:c.2320+2T>C		p.X774_splice	ENST00000375023	NM_004557.3	774																																																																																
FYN	2534	MSKCC	GRCh37	6	112029219	112029219	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	128	287	0	ENST00000368678.4:c.349G>T	p.Gly117Ter	p.G117*	ENST00000368678		117	Gga/Tga																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681120	117681120	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	136	420	1	ENST00000368508.3:c.3500delT	p.Leu1167Ter	p.L1167*	ENST00000368508	NM_002944.2	1167	tTa/ta																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710512	117710512	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	51	151	0	ENST00000368508.3:c.1759+1G>A		p.X587_splice	ENST00000368508	NM_002944.2	587																																																																																
TNFAIP3	7128	MSKCC	GRCh37	6	138200338	138200338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	179	331	0	ENST00000237289.4:c.1756G>A	p.Ala586Thr	p.A586T	ENST00000237289	NM_001270507.1	586	Gcc/Acc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138201243	138201243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	125	357	1	ENST00000237289.4:c.1942G>T	p.Ala648Ser	p.A648S	ENST00000237289	NM_001270507.1	648	Gcg/Tcg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152201808	152201808	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	45	340	0	ENST00000206249.3:c.662G>T	p.Cys221Phe	p.C221F	ENST00000206249	NM_000125.3	221	tGt/tTt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528284	157528284	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	185	523	0	ENST00000346085.5:c.6013del	p.Val2005TrpfsTer16	p.V2005Wfs*16	ENST00000346085	NM_020732.3	2003	aaG/aa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683658	162683658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	163	384	0	ENST00000366898.1:c.311G>A	p.Arg104Gln	p.R104Q	ENST00000366898	NM_004562.2	104	cGg/cAg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6027150	6027150	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	14	12	0	ENST00000265849.7:c.1246T>C	p.Ser416Pro	p.S416P	ENST00000265849	NM_000535.5	416	Tcc/Ccc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68934323	68934323	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	114	522	0	ENST00000288368.4:c.393del	p.Lys131AsnfsTer9	p.K131Nfs*9	ENST00000288368	NM_024870.2	130	cAa/ca																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980542	70980542	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1133	60	561	0	ENST00000276594.2:c.835A>G	p.Arg279Gly	p.R279G	ENST00000276594	NM_024504.3	279	Agg/Ggg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981892	70981892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	353	594	1	ENST00000276594.2:c.204del	p.Phe69SerfsTer10	p.F69Sfs*10	ENST00000276594	NM_024504.3	68	ccC/cc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738411	145738416	+	inframe_deletion	In_Frame_Del	DEL	GGTGCA	GGTGCA	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	230	580	0	ENST00000428558.2:c.2569_2574delTGCACC	p.Cys857_Thr858del	p.C857_T858del	ENST00000428558	NM_004260.3	857	TGCACC/-																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485971	8485971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	114	383	0	ENST00000356435.5:c.2846G>A	p.Gly949Asp	p.G949D	ENST00000356435		949	gGc/gAc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209504	98209504	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766315655		P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	137	447	1	ENST00000331920.6:c.4034G>A	p.Arg1345His	p.R1345H	ENST00000331920	NM_000264.3	1345	cGt/cAt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	41	445	1	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98218572	98218572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	131	336	2	ENST00000331920.6:c.3292G>A	p.Val1098Ile	p.V1098I	ENST00000331920	NM_000264.3	1098	Gtt/Att																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139811047	139811047	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141070190		P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	172	470	4	ENST00000247668.2:c.658G>A	p.Ala220Thr	p.A220T	ENST00000247668	NM_021138.3	220	Gcc/Acc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412133	63412133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	63	321	0	ENST00000330258.3:c.1034C>T	p.Ala345Val	p.A345V	ENST00000330258	NM_152424.3	345	gCc/gTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	227	238	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
BTK	695	MSKCC	GRCh37	X	100625048	100625048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	26	207	0	ENST00000308731.7:c.329C>A	p.Pro110His	p.P110H	ENST00000308731	NM_000061.2	110	cCt/cAt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123220540	123220540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	280	255	0	ENST00000218089.9:c.3197G>A	p.Arg1066Gln	p.R1066Q	ENST00000218089	NM_001042749.1	1066	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0029986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	46	515	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0029986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	35	294	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0029986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	70	429	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0029999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	185	386	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764146326		P-0029999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	280	681	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	65	190	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803144	1803144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	47	715	1	ENST00000260795.2:c.496G>A	p.Val166Met	p.V166M	ENST00000260795		166	Gtg/Atg																																																																															
RET	5979	MSKCC	GRCh37	10	43609969	43609969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	93	791	1	ENST00000355710.3:c.1921G>A	p.Ala641Thr	p.A641T	ENST00000355710	NM_020975.4	641	Gct/Act																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900942	114900942	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0029999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	52	422	0	ENST00000543371.1:c.553-1del		p.X185_splice	ENST00000543371	NM_001198531.1	185																																																																																
RTEL1	51750	MSKCC	GRCh37	20	62326776	62326776	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1465	78	842	0	ENST00000508582.2:c.3667G>T	p.Asp1223Tyr	p.D1223Y	ENST00000508582		1223	Gat/Tat																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245344	153245344	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	98	323	0	ENST00000281708.4:c.1847C>A	p.Thr616Lys	p.T616K	ENST00000281708	NM_033632.3	616	aCa/aAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0030001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	78	387	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TET1	80312	MSKCC	GRCh37	10	70405899	70405899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	142	609	0	ENST00000373644.4:c.3413C>T	p.Ser1138Leu	p.S1138L	ENST00000373644	NM_030625.2	1138	tCa/tTa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164701	36164701	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	270	741	0	ENST00000300305.3:c.1174C>T	p.Gln392Ter	p.Q392*	ENST00000300305		392	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0030001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	84	375	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
MSI1	4440	MSKCC	GRCh37	12	120806010	120806010	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	285	606	1	ENST00000257552.2:c.167T>A	p.Leu56Gln	p.L56Q	ENST00000257552	NM_002442.3	56	cTg/cAg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89838145	89838145	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	214	532	0	ENST00000389301.3:c.2092G>C	p.Glu698Gln	p.E698Q	ENST00000389301	NM_000135.2	698	Gag/Cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	19	974	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	41	1233	2	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	306	436	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520006		P-0028419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	470	729	0	ENST00000269305.4:c.821T>G	p.Val274Gly	p.V274G	ENST00000269305	NM_001126112.2	274	gTt/gGt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101908797	101908827	+	frameshift_variant	Frame_Shift_Del	DEL	CATAAATATGAAACATTTTGAATCCTTCAAA	CATAAATATGAAACATTTTGAATCCTTCAAA	-			P-0028419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	230	400	0	ENST00000374994.4:c.1162_1192del	p.Ile388ValfsTer9	p.I388Vfs*9	ENST00000374994	NM_004612.2	387	tcCATAAATATGAAACATTTTGAATCCTTCAAA/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0028425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	167	791	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	70	522	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RET	5979	MSKCC	GRCh37	10	43607597	43607597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	135	954	4	ENST00000355710.3:c.1573C>T	p.Arg525Trp	p.R525W	ENST00000355710	NM_020975.4	525	Cgg/Tgg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082286	16082286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	222	983	0	ENST00000281043.3:c.100G>A	p.Asp34Asn	p.D34N	ENST00000281043	NM_005378.4	34	Gac/Aac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44919308	44919311	+	frameshift_variant	Frame_Shift_Del	DEL	AACT	AACT	-			P-0028425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	93	254	0	ENST00000377967.4:c.1238_1241del	p.Thr413AsnfsTer25	p.T413Nfs*25	ENST00000377967	NM_021140.2	412	aaAACT/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	300	514	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0028428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	335	466	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	479	867	1	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440946	56440946	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	334	618	0	ENST00000407977.2:c.391G>T	p.Glu131Ter	p.E131*	ENST00000407977		131	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579328	7579328	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	132	487	0	ENST00000269305.4:c.359A>G	p.Lys120Arg	p.K120R	ENST00000269305	NM_001126112.2	120	aAg/aGg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123200088	123200088	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	33	172	0	ENST00000218089.9:c.2160C>G	p.Ile720Met	p.I720M	ENST00000218089	NM_001042749.1	720	atC/atG																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808647	1808647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	124	680	1	ENST00000260795.2:c.2260G>A	p.Val754Met	p.V754M	ENST00000260795		754	Gtg/Atg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106392	27106396	+	frameshift_variant	Frame_Shift_Del	DEL	GTCCA	GTCCA	CTC			P-0028436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	165	488	1	ENST00000324856.7:c.6003_6007delinsCTC	p.Met2001IlefsTer31	p.M2001Ifs*31	ENST00000324856	NM_006015.4	2001	atGTCCAaa/atCTCaa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984723	11984724	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0028436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	73	244	0	ENST00000353533.5:c.269_270insAT	p.Pro91SerfsTer13	p.P91Sfs*13	ENST00000353533	NM_003010.3	90	tcc/tcATc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185183571	185183571	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	63	348	1	ENST00000265026.3:c.1425G>T	p.Lys475Asn	p.K475N	ENST00000265026	NM_004721.4	475	aaG/aaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	85	348	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578373	7578381	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TCGCTATCT	TCGCTATCT	-			P-0028441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	164	401	0	ENST00000269305.4:c.549_557del	p.Asp184_Asp186del	p.D184_D186del	ENST00000269305	NM_001126112.2	183	tcAGATAGCGAt/tct																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877427	40877427	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	170	347	0	ENST00000373198.4:c.2269G>T	p.Glu757Ter	p.E757*	ENST00000373198	NM_133170.3	757	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175440	112175441	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	116	245	0	ENST00000257430.4:c.4152dup	p.Ser1385Ter	p.S1385*	ENST00000257430	NM_000038.5	1383	-/T																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023525	27023525	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	65	787	0	ENST00000324856.7:c.631C>T	p.Gln211Ter	p.Q211*	ENST00000324856	NM_006015.4	211	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111498	8111499	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	151	781	0	ENST00000346208.3:c.985dup	p.Arg329LysfsTer23	p.R329Kfs*23	ENST00000346208		328	-/A																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169985714	169985714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	84	546	1	ENST00000295797.4:c.376C>T	p.Arg126Cys	p.R126C	ENST00000295797	NM_002740.5	126	Cgt/Tgt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981408	70981408	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	72	863	0	ENST00000276594.2:c.688C>A	p.Pro230Thr	p.P230T	ENST00000276594	NM_024504.3	230	Cca/Aca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8375955	8375955	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	31	417	1	ENST00000356435.5:c.4642C>A	p.Pro1548Thr	p.P1548T	ENST00000356435		1548	Ccg/Acg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061250	38061250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	110	746	1	ENST00000250448.2:c.739C>T	p.His247Tyr	p.H247Y	ENST00000250448	NM_004496.3	247	Cac/Tac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391011	89391011	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	15	621	0	ENST00000336596.2:c.1077C>G	p.Phe359Leu	p.F359L	ENST00000336596	NM_005233.5	359	ttC/ttG																																																																															
BCL6	604	MSKCC	GRCh37	3	187447037	187447037	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	114	676	0	ENST00000232014.4:c.1156C>G	p.Leu386Val	p.L386V	ENST00000232014	NM_001130845.1	386	Ctc/Gtc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47699360	47699360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	84	679	0	ENST00000347630.2:c.148G>A	p.Glu50Lys	p.E50K	ENST00000347630	NM_001007230.1	50	Gaa/Aaa																																																																															
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	123	972	1	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																															
CDH1	999	MSKCC	GRCh37	16	68846080	68846080	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	143	907	4	ENST00000261769.5:c.1051C>T	p.Gln351Ter	p.Q351*	ENST00000261769	NM_004360.3	351	Caa/Taa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061517	38061517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	68	431	0	ENST00000250448.2:c.472G>A	p.Asp158Asn	p.D158N	ENST00000250448	NM_004496.3	158	Gac/Aac																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175942	176175942	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs964768927		P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	32	122	0	ENST00000367669.3:c.173C>T	p.Ser58Leu	p.S58L	ENST00000367669	NM_022457.5	58	tCg/tTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949356	71949356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	120	881	0	ENST00000298229.2:c.3736C>T	p.His1246Tyr	p.H1246Y	ENST00000298229	NM_001567.3	1246	Cac/Tac																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910756	29910756	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	92	1097	0	ENST00000376809.5:c.296G>C	p.Arg99Pro	p.R99P	ENST00000376809	NM_002116.7	99	cGa/cCa																																																																															
SYK	6850	MSKCC	GRCh37	9	93637126	93637126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	43	751	2	ENST00000375746.1:c.1176G>A	p.Met392Ile	p.M392I	ENST00000375746	NM_001174167.1	392	atG/atA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859702	151859702	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	41	350	0	ENST00000262189.6:c.10960C>T	p.Gln3654Ter	p.Q3654*	ENST00000262189	NM_170606.2	3654	Caa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023307	27023307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	26	234	0	ENST00000324856.7:c.413C>T	p.Ser138Leu	p.S138L	ENST00000324856	NM_006015.4	138	tCa/tTa																																																																															
NUF2	83540	MSKCC	GRCh37	1	163295859	163295859	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	54	654	0	ENST00000271452.3:c.18C>G	p.Phe6Leu	p.F6L	ENST00000271452	NM_145697.2	6	ttC/ttG																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649908	88649908	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	68	604	0	ENST00000372037.3:c.157G>C	p.Glu53Gln	p.E53Q	ENST00000372037	NM_004329.2	53	Gag/Cag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711923	89711945	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTTAAAGAATCATCTGGATTA	CTGTTAAAGAATCATCTGGATTA	-			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	27	755	0	ENST00000371953.3:c.541_563del	p.Leu181Ter	p.L181*	ENST00000371953	NM_000314.4	181	CTGTTAAAGAATCATCTGGATTAt/t																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936176	71936176	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	44	579	0	ENST00000298229.2:c.148G>T	p.Glu50Ter	p.E50*	ENST00000298229	NM_001567.3	50	Gag/Tag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942656	71942656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	122	844	0	ENST00000298229.2:c.1612C>G	p.Leu538Val	p.L538V	ENST00000298229	NM_001567.3	538	Ctg/Gtg																																																																															
SESN3	143686	MSKCC	GRCh37	11	94908775	94908775	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	72	763	1	ENST00000536441.1:c.1279C>T	p.Gln427Ter	p.Q427*	ENST00000536441	NM_144665.3	427	Caa/Taa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807374	3807374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	67	560	0	ENST00000262367.5:c.3613G>C	p.Glu1205Gln	p.E1205Q	ENST00000262367	NM_004380.2	1205	Gag/Cag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671611	67671611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	57	615	0	ENST00000264010.4:c.2020G>A	p.Glu674Lys	p.E674K	ENST00000264010	NM_006565.3	674	Gaa/Aaa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029406	16029406	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	45	676	0	ENST00000268712.3:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000268712	NM_006311.3	542	Gaa/Caa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029484	16029484	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	48	622	1	ENST00000268712.3:c.1546G>T	p.Glu516Ter	p.E516*	ENST00000268712	NM_006311.3	516	Gaa/Taa																																																																															
CIC	23152	MSKCC	GRCh37	19	42793219	42793219	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	70	1175	0	ENST00000575354.2:c.1111C>T	p.Gln371Ter	p.Q371*	ENST00000575354	NM_015125.3	371	Cag/Tag																																																																															
SOS1	6654	MSKCC	GRCh37	2	39278424	39278424	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	81	773	0	ENST00000402219.2:c.725T>A	p.Val242Glu	p.V242E	ENST00000402219	NM_005633.3	242	gTa/gAa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266024	41266024	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	14	275	0	ENST00000349496.5:c.21G>C	p.Leu7Phe	p.L7F	ENST00000349496	NM_001904.3	7	ttG/ttC																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71101690	71101690	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	22	388	0	ENST00000318789.4:c.508G>C	p.Glu170Gln	p.E170Q	ENST00000318789	NM_032682.5	170	Gag/Cag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71101708	71101708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	27	412	0	ENST00000318789.4:c.490G>A	p.Ala164Thr	p.A164T	ENST00000318789	NM_032682.5	164	Gct/Act																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71101729	71101729	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	31	408	0	ENST00000318789.4:c.469C>T	p.Gln157Ter	p.Q157*	ENST00000318789	NM_032682.5	157	Caa/Taa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143033788	143033788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	44	632	1	ENST00000262992.4:c.2183C>T	p.Ser728Leu	p.S728L	ENST00000262992	NM_001101669.1	728	tCa/tTa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143094931	143094931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	66	644	0	ENST00000262992.4:c.1213G>A	p.Glu405Lys	p.E405K	ENST00000262992	NM_001101669.1	405	Gaa/Aaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160564	56160564	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	50	359	0	ENST00000399503.3:c.838C>T	p.Gln280Ter	p.Q280*	ENST00000399503	NM_005921.1	280	Cag/Tag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176720958	176720958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	93	573	0	ENST00000439151.2:c.6589G>A	p.Asp2197Asn	p.D2197N	ENST00000439151	NM_022455.4	2197	Gat/Aat																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032138	26032138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	56	395	0	ENST00000244661.2:c.151G>C	p.Glu51Gln	p.E51Q	ENST00000244661	NM_003537.3	51	Gag/Cag																																																																															
TAP1	6890	MSKCC	GRCh37	6	32813519	32813519	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	97	598	0	ENST00000354258.4:c.2264C>A	p.Ser755Ter	p.S755*	ENST00000354258	NM_000593.5	755	tCa/tAa																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946057	13946057	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	24	420	0	ENST00000405192.2:c.1039G>C	p.Glu347Gln	p.E347Q	ENST00000405192	NM_001163147.1	347	Gag/Cag																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38153467	38153467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	33	566	0	ENST00000317025.8:c.2762G>A	p.Gly921Glu	p.G921E	ENST00000317025	NM_023034.1	921	gGa/gAa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372500	55372500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1259	172	1424	3	ENST00000297316.4:c.1190C>T	p.Ser397Leu	p.S397L	ENST00000297316	NM_022454.3	397	tCg/tTg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128434737	128434737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	97	846	0	ENST00000265960.3:c.117G>C	p.Glu39Asp	p.E39D	ENST00000265960	NM_001006617.1	39	gaG/gaC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0028457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	259	576	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17952496	17952496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	90	687	2	ENST00000458235.1:c.937G>A	p.Gly313Arg	p.G313R	ENST00000458235	NM_000215.3	313	Gga/Aga																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149516600	149516600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1480	113	711	1	ENST00000261799.4:c.11C>T	p.Pro4Leu	p.P4L	ENST00000261799	NM_002609.3	4	cCg/cTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604704	48604704	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	256	451	0	ENST00000342988.3:c.1526G>A	p.Trp509Ter	p.W509*	ENST00000342988	NM_005359.5	509	tGg/tAg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178131	56178131	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	190	361	0	ENST00000399503.3:c.3107del	p.Asn1036ThrfsTer46	p.N1036Tfs*46	ENST00000399503	NM_005921.1	1035	gAa/ga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180648	56180649	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	152	429	0	ENST00000399503.3:c.3979dup	p.Ala1327GlyfsTer11	p.A1327Gfs*11	ENST00000399503	NM_005921.1	1326	atg/atGg																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020764	26020765	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTG			P-0028457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	153	206	0	ENST00000357647.3:c.48_49insTGG	p.Ala16_Pro17insTrp	p.A16_P17insW	ENST00000357647	NM_003529.2	16	gcg/gcGTGg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0028464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	52	329	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577144	7577146	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0028464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	183	429	0	ENST00000269305.4:c.792_794delACT	p.Leu265del	p.L265del	ENST00000269305	NM_001126112.2	264	ctACTg/ctg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0028464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	285	364	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6045573	6045573	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148270248		P-0028464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	96	300	0	ENST00000265849.7:c.113C>T	p.Ala38Val	p.A38V	ENST00000265849	NM_000535.5	38	gCg/gTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0028464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	90	364	2				ENST00000310581	NM_198253.2																																																																																	
ERBB3	2065	MSKCC	GRCh37	12	56486587	56486587	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	127	440	0	ENST00000267101.3:c.1166C>A	p.Thr389Lys	p.T389K	ENST00000267101	NM_001982.3	389	aCa/aAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0028466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	44	382	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577093	7577093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	149	616	0	ENST00000269305.4:c.845G>C	p.Arg282Pro	p.R282P	ENST00000269305	NM_001126112.2	282	cGg/cCg																																																																															
ATM	472	MSKCC	GRCh37	11	108128328	108128328	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	42	217	0	ENST00000278616.4:c.2371A>T	p.Thr791Ser	p.T791S	ENST00000278616	NM_000051.3	791	Acc/Tcc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12037374	12037394	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTAGACTGTAGACTGCTTTG	TGTAGACTGTAGACTGCTTTG	-			P-0028466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	62	670	0	ENST00000396373.4:c.1010-5_1025del		p.X337_splice	ENST00000396373	NM_001987.4	337																																																																																
SMAD3	4088	MSKCC	GRCh37	15	67473592	67473593	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	32	399	1	ENST00000327367.4:c.673dup	p.Thr225AsnfsTer86	p.T225Nfs*86	ENST00000327367	NM_005902.3	224	-/A																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375255	15375255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	28	507	1	ENST00000263377.2:c.1172G>T	p.Cys391Phe	p.C391F	ENST00000263377	NM_058243.2	391	tGt/tTt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095986	178095986	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	20	386	0	ENST00000397062.3:c.1345C>G	p.Arg449Gly	p.R449G	ENST00000397062	NM_006164.4	449	Cgc/Ggc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624885	9624885	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	45	362	0	ENST00000353224.5:c.92del	p.Lys31SerfsTer13	p.K31Sfs*13	ENST00000353224	NM_177990.2	31	aAg/ag																																																																															
ATRX	546	MSKCC	GRCh37	X	76776892	76776892	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	40	451	0	ENST00000373344.5:c.7060A>G	p.Ile2354Val	p.I2354V	ENST00000373344	NM_000489.3	2354	Att/Gtt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	58	332	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	130	585	0	ENST00000269305.4:c.451C>G	p.Pro151Ala	p.P151A	ENST00000269305	NM_001126112.2	151	Ccc/Gcc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	91	485	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18972860	18972860	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	42	460	0	ENST00000262803.5:c.2499G>C	p.Glu833Asp	p.E833D	ENST00000262803	NM_002911.3	833	gaG/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	341	601	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	146	548	0	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	212	351	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275179	41275179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	126	307	0	ENST00000349496.5:c.1345C>T	p.Arg449Cys	p.R449C	ENST00000349496	NM_001904.3	449	Cgt/Tgt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18644470	18644470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	55	343	0	ENST00000266497.5:c.2648G>A	p.Cys883Tyr	p.C883Y	ENST00000266497		883	tGt/tAt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520076	106520076	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	83	236	2	ENST00000359195.3:c.2504G>T	p.Gly835Val	p.G835V	ENST00000359195	NM_002649.2	835	gGt/gTt																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739332	46739332	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	177	323	0	ENST00000371975.4:c.1525del	p.Arg509GlufsTer8	p.R509Efs*8	ENST00000371975	NM_003579.3	508	aCc/ac																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206658386	206658386	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	186	428	0	ENST00000367120.3:c.1480G>T	p.Glu494Ter	p.E494*	ENST00000367120	NM_014002.3	494	Gaa/Taa																																																																															
WT1	7490	MSKCC	GRCh37	11	32439165	32439165	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	159	396	0	ENST00000332351.3:c.908G>T	p.Cys303Phe	p.C303F	ENST00000332351	NM_024426.4	303	tGc/tTc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125499186	125499186	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	193	407	0	ENST00000428830.2:c.349G>T	p.Gly117Trp	p.G117W	ENST00000428830	NM_001114121.2	117	Ggg/Tgg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103513875	103513875	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	125	248	0	ENST00000355739.4:c.691C>T	p.Gln231Ter	p.Q231*	ENST00000355739	NM_000123.3	231	Cag/Tag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434565	110434565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	233	555	1	ENST00000375856.3:c.3836G>T	p.Gly1279Val	p.G1279V	ENST00000375856	NM_003749.2	1279	gGa/gTa																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631833	90631833	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	247	420	0	ENST00000330062.3:c.520G>T	p.Ala174Ser	p.A174S	ENST00000330062	NM_002168.2	174	Gcc/Tcc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992860	72992860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	138	512	1	ENST00000268489.5:c.1185G>T	p.Leu395Phe	p.L395F	ENST00000268489	NM_006885.3	395	ttG/ttT																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16047001	16047001	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	136	320	0	ENST00000268712.3:c.1092G>T	p.Gln364His	p.Q364H	ENST00000268712	NM_006311.3	364	caG/caT																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763208	59763208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	61	422	0	ENST00000259008.2:c.2894G>T	p.Arg965Ile	p.R965I	ENST00000259008	NM_032043.2	965	aGa/aTa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78857629	78857629	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	150	606	0	ENST00000306801.3:c.1699A>T	p.Asn567Tyr	p.N567Y	ENST00000306801	NM_020761.2	567	Aac/Tac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610357	10610357	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	334	635	0	ENST00000171111.5:c.353A>T	p.Gln118Leu	p.Q118L	ENST00000171111	NM_203500.1	118	cAg/cTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135066	11135069	+	frameshift_variant	Frame_Shift_Del	DEL	GCAG	GCAG	-			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	330	600	0	ENST00000344626.4:c.3035_3038del	p.Gln1012ProfsTer6	p.Q1012Pfs*6	ENST00000344626	NM_003072.3	1011	atGCAG/at																																																																															
CALR	811	MSKCC	GRCh37	19	13051114	13051114	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	247	450	0	ENST00000316448.5:c.550G>T	p.Val184Leu	p.V184L	ENST00000316448	NM_004343.3	184	Gtg/Ttg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220938	36220938	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	177	308	0	ENST00000222270.7:c.4988A>G	p.His1663Arg	p.H1663R	ENST00000222270	NM_014727.1	1663	cAc/cGc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198274533	198274533	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	183	373	0	ENST00000335508.6:c.865C>A	p.Arg289Ser	p.R289S	ENST00000335508	NM_012433.2	289	Cgt/Agt																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29092893	29092893	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	159	336	0	ENST00000328354.6:c.1091T>A	p.Ile364Lys	p.I364K	ENST00000328354	NM_007194.3	364	aTa/aAa																																																																															
EP300	2033	MSKCC	GRCh37	22	41566442	41566442	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	159	312	0	ENST00000263253.7:c.4319C>G	p.Pro1440Arg	p.P1440R	ENST00000263253	NM_001429.3	1440	cCa/cGa																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182646	38182646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	141	292	0	ENST00000396334.3:c.799C>T	p.Pro267Ser	p.P267S	ENST00000396334	NM_002468.4	267	Ccc/Tcc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911488	134911488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	237	450	2	ENST00000398015.3:c.1953G>T	p.Lys651Asn	p.K651N	ENST00000398015	NM_004441.4	651	aaG/aaT																																																																															
SDHA	6389	MSKCC	GRCh37	5	228307	228307	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	84	201	0	ENST00000264932.6:c.629G>C	p.Arg210Pro	p.R210P	ENST00000264932	NM_004168.2	210	cGa/cCa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752841	57752841	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	177	299	0	ENST00000274289.3:c.1087T>G	p.Phe363Val	p.F363V	ENST00000274289	NM_006622.3	363	Ttc/Gtc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131953921	131953921	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	65	295	0	ENST00000265335.6:c.3324G>T	p.Met1108Ile	p.M1108I	ENST00000265335		1108	atG/atT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710637	117710637	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	79	286	0	ENST00000368508.3:c.1635G>T	p.Leu545Phe	p.L545F	ENST00000368508	NM_002944.2	545	ttG/ttT																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137525537	137525537	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	99	463	0	ENST00000367739.4:c.478del	p.Asp160IlefsTer17	p.D160Ifs*17	ENST00000367739	NM_000416.2	160	Gat/at																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509517	106509517	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	115	516	0	ENST00000359195.3:c.1511C>A	p.Ser504Tyr	p.S504Y	ENST00000359195	NM_002649.2	504	tCt/tAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151834005	151834005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	201	338	0	ENST00000262189.6:c.14648G>A	p.Cys4883Tyr	p.C4883Y	ENST00000262189	NM_170606.2	4883	tGc/tAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860124	151860124	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	104	360	0	ENST00000262189.6:c.10538C>A	p.Pro3513His	p.P3513H	ENST00000262189	NM_170606.2	3513	cCt/cAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69028087	69028087	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	237	577	0	ENST00000288368.4:c.3246C>A	p.Ser1082Arg	p.S1082R	ENST00000288368	NM_024870.2	1082	agC/agA																																																																															
ATRX	546	MSKCC	GRCh37	X	76938830	76938830	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	221	295	0	ENST00000373344.5:c.1918G>T	p.Val640Phe	p.V640F	ENST00000373344	NM_000489.3	640	Gtt/Ttt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288549	15288549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	10	42	0	ENST00000263388.2:c.4190G>A	p.Gly1397Glu	p.G1397E	ENST00000263388	NM_000435.2	1397	gGg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0028478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	98	563	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121082	11121082	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	89	647	0	ENST00000344626.4:c.2149G>C	p.Glu717Gln	p.E717Q	ENST00000344626	NM_003072.3	717	Gaa/Caa																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429978	78429978	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	75	341	0	ENST00000370768.2:c.901del	p.Ile301TyrfsTer22	p.I301Yfs*22	ENST00000370768	NM_003902.3	301	Ata/ta																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	87	349	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	112	631	3	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	103	299	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	75	293	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223796	53223796	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	54	735	0	ENST00000375401.3:c.3563G>C	p.Cys1188Ser	p.C1188S	ENST00000375401	NM_004187.3	1188	tGt/tCt																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	30	257	0	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	112	552	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584514	48584514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	43	311	1	ENST00000342988.3:c.692delG	p.Gly231AlafsTer10	p.G231Afs*10	ENST00000342988	NM_005359.5	229	ctG/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	99	556	2	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																															
KIT	3815	MSKCC	GRCh37	4	55564642	55564642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	51	452	2	ENST00000288135.5:c.530G>A	p.Arg177His	p.R177H	ENST00000288135	NM_000222.2	177	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	29	598	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	118	445	1	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	36	499	2	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																															
POLE	5426	MSKCC	GRCh37	12	133237689	133237689	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060500820		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	92	510	0	ENST00000320574.5:c.2926C>T	p.Arg976Cys	p.R976C	ENST00000320574	NM_006231.2	976	Cgc/Tgc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	118	505	3	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874637	35874637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	65	321	5	ENST00000303115.3:c.799del	p.Arg267GlyfsTer28	p.R267Gfs*28	ENST00000303115	NM_002185.3	265	Aaa/aa																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008054	29008054	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	27	305	0	ENST00000282397.4:c.715C>A	p.Pro239Thr	p.P239T	ENST00000282397	NM_002019.4	239	Cca/Aca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	14	279	3	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136070	64136070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	78	531	1	ENST00000334205.4:c.1331G>A	p.Arg444His	p.R444H	ENST00000334205	NM_003942.2	444	cGc/cAc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169952	32169952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	51	639	0	ENST00000375023.3:c.3656G>A	p.Arg1219Gln	p.R1219Q	ENST00000375023	NM_004557.3	1219	cGg/cAg																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	40	423	0	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258979	153258979	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	30	223	0	ENST00000281708.4:c.836A>G	p.Asp279Gly	p.D279G	ENST00000281708	NM_033632.3	279	gAc/gGc																																																																															
ARAF	369	MSKCC	GRCh37	X	47422716	47422716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	41	437	3	ENST00000377045.4:c.188G>A	p.Arg63Gln	p.R63Q	ENST00000377045	NM_001654.4	63	cGa/cAa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097625	11097625	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	148	648	3	ENST00000344626.4:c.810delC	p.Met272CysfsTer31	p.M272Cfs*31	ENST00000344626	NM_003072.3	269	Ccc/cc																																																																															
RB1	5925	MSKCC	GRCh37	13	48954342	48954342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	38	279	0	ENST00000267163.4:c.1463C>T	p.Ala488Val	p.A488V	ENST00000267163	NM_000321.2	488	gCg/gTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400005	139400005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	133	629	1	ENST00000277541.6:c.4343C>T	p.Ala1448Val	p.A1448V	ENST00000277541	NM_017617.3	1448	gCg/gTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40979319	40979319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	36	455	0	ENST00000373198.4:c.1814C>T	p.Thr605Met	p.T605M	ENST00000373198	NM_133170.3	605	aCg/aTg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627418	37627418	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	51	556	2	ENST00000447079.4:c.1337del	p.Lys446SerfsTer6	p.K446Sfs*6	ENST00000447079	NM_015083.1	445	Aaa/aa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955111	17955112	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	119	590	2	ENST00000458235.1:c.115dupC	p.Gln39ProfsTer13	p.Q39Pfs*13	ENST00000458235	NM_000215.3	39	cag/cCag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256439	115256439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	75	344	0	ENST00000369535.4:c.272C>T	p.Ala91Val	p.A91V	ENST00000369535	NM_002524.4	91	gCg/gTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905061	50905061	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	92	484	0	ENST00000440232.2:c.347delC	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	115	Ccc/cc																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346220	152346220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	133	455	3	ENST00000359321.1:c.350del	p.Leu117TrpfsTer17	p.L117Wfs*17	ENST00000359321	NM_005431.1	117	tTg/tg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285630	46285630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	63	372	0	ENST00000334344.6:c.4990C>T	p.Pro1664Ser	p.P1664S	ENST00000334344	NM_152641.2	1664	Cca/Tca																																																																															
JAK1	3716	MSKCC	GRCh37	1	65307280	65307283	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	28	274	0	ENST00000342505.4:c.2405_2408delAAGA	p.Lys802ArgfsTer11	p.K802Rfs*11	ENST00000342505	NM_002227.2	802	aAAGAg/ag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15295773	15295773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	144	784	3	ENST00000263388.2:c.2354G>A	p.Arg785His	p.R785H	ENST00000263388	NM_000435.2	785	cGc/cAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636766	8636766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	102	401	0	ENST00000356435.5:c.143C>T	p.Thr48Met	p.T48M	ENST00000356435		48	aCg/aTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	118	535	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189472	94189473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	68	397	1	ENST00000323929.3:c.1532dup	p.Asn511LysfsTer3	p.N511Kfs*3	ENST00000323929	NM_005591.3	511	aat/aaAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164508	47164508	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201756643		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	61	300	1	ENST00000409792.3:c.1618C>T	p.Arg540Ter	p.R540*	ENST00000409792	NM_014159.6	540	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	132	451	2	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
NF1	4763	MSKCC	GRCh37	17	29556250	29556250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	52	378	0	ENST00000358273.4:c.2617C>T	p.Arg873Cys	p.R873C	ENST00000358273	NM_001042492.2	873	Cgt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	33	531	2	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602518	10602518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	93	519	1	ENST00000171111.5:c.1060C>T	p.Arg354Trp	p.R354W	ENST00000171111	NM_203500.1	354	Cgg/Tgg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155654	56155654	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746479827		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	50	307	0	ENST00000399503.3:c.746G>A	p.Arg249His	p.R249H	ENST00000399503	NM_005921.1	249	cGc/cAc																																																																															
ATR	545	MSKCC	GRCh37	3	142274740	142274741	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	46	317	0	ENST00000350721.4:c.2319_2320delAA	p.Lys773AsnfsTer3	p.K773Nfs*3	ENST00000350721	NM_001184.3	773	aaAAta/aata																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218451	36218451	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	70	532	0	ENST00000222270.7:c.4235del	p.Gly1412AlafsTer10	p.G1412Afs*10	ENST00000222270	NM_014727.1	1410	caG/ca																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680722	88680722	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	81	488	0	ENST00000360948.2:c.535del	p.Glu179ArgfsTer24	p.E179Rfs*24	ENST00000360948	NM_001012338.2	179	Gag/ag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43707977	43707977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	141	615	0	ENST00000382044.4:c.4904G>A	p.Arg1635His	p.R1635H	ENST00000382044	NM_001141980.1	1635	cGc/cAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436815	110436815	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	65	606	2	ENST00000375856.3:c.1586del	p.Pro529ArgfsTer15	p.P529Rfs*15	ENST00000375856	NM_003749.2	529	cCg/cg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133898	41133898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	57	286	0	ENST00000379561.5:c.1730del	p.Gly577AlafsTer5	p.G577Afs*5	ENST00000379561	NM_002015.3	577	gGc/gc																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40683721	40683721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	126	467	0	ENST00000249776.8:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000249776	NM_033286.3	238	cGa/cAa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034427	47034427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	63	537	1	ENST00000329236.7:c.281G>A	p.Arg94Gln	p.R94Q	ENST00000329236	NM_001204466.1	94	cGg/cAg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45795081	45795081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	63	436	3	ENST00000372115.3:c.1505C>T	p.Pro502Leu	p.P502L	ENST00000372115	NM_001048171.1	502	cCg/cTg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828186	243828186	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	34	302	0	ENST00000263826.5:c.173-1G>A		p.X58_splice	ENST00000263826	NM_005465.4	58																																																																																
RET	5979	MSKCC	GRCh37	10	43620390	43620390	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	94	429	0	ENST00000355710.3:c.2999A>G	p.Asp1000Gly	p.D1000G	ENST00000355710	NM_020975.4	1000	gAc/gGc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64571894	64571895	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	218	822	0	ENST00000337652.1:c.1759_1760del	p.Gln587ValfsTer14	p.Q587Vfs*14	ENST00000337652	NM_130803.2	587	CAg/g																																																																															
PGR	5241	MSKCC	GRCh37	11	100998423	100998423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	39	326	0	ENST00000325455.5:c.1379G>A	p.Cys460Tyr	p.C460Y	ENST00000325455	NM_001202474.3	460	tGc/tAc																																																																															
ATM	472	MSKCC	GRCh37	11	108199803	108199803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	67	221	1	ENST00000278616.4:c.7145G>A	p.Gly2382Glu	p.G2382E	ENST00000278616	NM_000051.3	2382	gGa/gAa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870955	12870955	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	68	301	0	ENST00000228872.4:c.182A>C	p.Asn61Thr	p.N61T	ENST00000228872	NM_004064.3	61	aAt/aCt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245225	46245225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	33	396	0	ENST00000334344.6:c.3319G>A	p.Ala1107Thr	p.A1107T	ENST00000334344	NM_152641.2	1107	Gca/Aca																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121435295	121435296	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	102	475	0	ENST00000257555.6:c.1330_1331del	p.Gln444GlufsTer104	p.Q444Efs*104	ENST00000257555		443	gCA/g																																																																															
POLE	5426	MSKCC	GRCh37	12	133233811	133233811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	44	467	1	ENST00000320574.5:c.3493G>A	p.Asp1165Asn	p.D1165N	ENST00000320574	NM_006231.2	1165	Gac/Aac																																																																															
POLE	5426	MSKCC	GRCh37	12	133249748	133249748	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	56	314	0	ENST00000320574.5:c.1473+2T>C		p.X491_splice	ENST00000320574	NM_006231.2	491																																																																																
LATS2	26524	MSKCC	GRCh37	13	21562141	21562141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	243	799	0	ENST00000382592.4:c.1778G>A	p.Arg593His	p.R593H	ENST00000382592	NM_014572.2	593	cGc/cAc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66779632	66779632	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	40	371	0	ENST00000307102.5:c.960+2T>C		p.X320_splice	ENST00000307102	NM_002755.3	320																																																																																
IGF1R	3480	MSKCC	GRCh37	15	99482547	99482547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	62	475	0	ENST00000268035.6:c.3415C>T	p.Arg1139Trp	p.R1139W	ENST00000268035	NM_000875.3	1139	Cgg/Tgg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807319	3807319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	53	383	0	ENST00000262367.5:c.3668G>A	p.Arg1223His	p.R1223H	ENST00000262367	NM_004380.2	1223	cGc/cAc																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348869	11348869	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	22	209	0	ENST00000332029.2:c.467C>A	p.Ala156Glu	p.A156E	ENST00000332029	NM_003745.1	156	gCg/gAg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644845	67644845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	125	414	0	ENST00000264010.4:c.110C>T	p.Ala37Val	p.A37V	ENST00000264010	NM_006565.3	37	gCc/gTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822127	72822127	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	37	395	0	ENST00000268489.5:c.10048C>T	p.Gln3350Ter	p.Q3350*	ENST00000268489	NM_006885.3	3350	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831172	72831172	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	87	388	0	ENST00000268489.5:c.5409del	p.Ser1804ValfsTer10	p.S1804Vfs*10	ENST00000268489	NM_006885.3	1803	ccC/cc																																																																															
NF1	4763	MSKCC	GRCh37	17	29653022	29653022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	51	310	1	ENST00000358273.4:c.5020G>A	p.Val1674Ile	p.V1674I	ENST00000358273	NM_001042492.2	1674	Gtc/Atc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245162	41245162	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	37	580	0	ENST00000357654.3:c.2386del	p.Thr796GlnfsTer7	p.T796Qfs*7	ENST00000357654	NM_007294.3	796	Aca/ca																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532568	63532568	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	129	558	1	ENST00000307078.5:c.2011delC	p.Arg671AlafsTer18	p.R671Afs*18	ENST00000307078	NM_004655.3	671	Cgc/gc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534458	63534458	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	62	506	0	ENST00000307078.5:c.1063A>G	p.Thr355Ala	p.T355A	ENST00000307078	NM_004655.3	355	Acc/Gcc																																																																															
BCL2	596	MSKCC	GRCh37	18	60985752	60985754	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	24	213	0	ENST00000333681.4:c.146_148del	p.Phe49del	p.F49del	ENST00000333681		49	tTCTcc/tcc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353791	15353791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	119	520	1	ENST00000263377.2:c.3089C>T	p.Pro1030Leu	p.P1030L	ENST00000263377	NM_058243.2	1030	cCg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213944	36213944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	129	662	2	ENST00000222270.7:c.2770C>T	p.Arg924Trp	p.R924W	ENST00000222270	NM_014727.1	924	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216679	36216679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	105	477	0	ENST00000222270.7:c.3845C>T	p.Pro1282Leu	p.P1282L	ENST00000222270	NM_014727.1	1282	cCc/cTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218383	36218383	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	141	657	0	ENST00000222270.7:c.4162T>C	p.Tyr1388His	p.Y1388H	ENST00000222270	NM_014727.1	1388	Tac/Cac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220932	36220932	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	55	306	0	ENST00000222270.7:c.4982A>C	p.Asn1661Thr	p.N1661T	ENST00000222270	NM_014727.1	1661	aAc/aCc																																																																															
CIC	23152	MSKCC	GRCh37	19	42791698	42791698	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	87	485	2	ENST00000575354.2:c.584G>A	p.Arg195Gln	p.R195Q	ENST00000575354	NM_015125.3	195	cGg/cAg																																																																															
CIC	23152	MSKCC	GRCh37	19	42796535	42796535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	122	639	1	ENST00000575354.2:c.3092C>T	p.Ser1031Leu	p.S1031L	ENST00000575354	NM_015125.3	1031	tCg/tTg																																																																															
ALK	238	MSKCC	GRCh37	2	29940533	29940533	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	136	532	0	ENST00000389048.3:c.698T>C	p.Met233Thr	p.M233T	ENST00000389048	NM_004304.4	233	aTg/aCg																																																																															
ALK	238	MSKCC	GRCh37	2	30143223	30143223	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	80	564	0	ENST00000389048.3:c.303G>T	p.Leu101Phe	p.L101F	ENST00000389048	NM_004304.4	101	ttG/ttT																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46574040	46574040	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	34	489	0	ENST00000263734.3:c.55T>A	p.Ser19Thr	p.S19T	ENST00000263734	NM_001430.4	19	Tcc/Acc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605131	46605131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	43	585	0	ENST00000263734.3:c.1348G>A	p.Glu450Lys	p.E450K	ENST00000263734	NM_001430.4	450	Gag/Aag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251619	212251619	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	30	353	0	ENST00000342788.4:c.3440A>G	p.Glu1147Gly	p.E1147G	ENST00000342788	NM_005235.2	1147	gAg/gGg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021634	31021634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	119	439	0	ENST00000375687.4:c.1633C>A	p.Arg545Ser	p.R545S	ENST00000375687	NM_015338.5	545	Cgt/Agt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023798	31023798	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	94	517	0	ENST00000375687.4:c.3283T>C	p.Ser1095Pro	p.S1095P	ENST00000375687	NM_015338.5	1095	Tcc/Ccc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46252731	46252731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	22	317	1	ENST00000371998.3:c.160G>A	p.Ala54Thr	p.A54T	ENST00000371998		54	Gcc/Acc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130637	29130637	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142243299		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	21	418	0	ENST00000328354.6:c.73G>A	p.Val25Ile	p.V25I	ENST00000328354	NM_007194.3	25	Gtt/Att																																																																															
RAC2	5880	MSKCC	GRCh37	22	37622751	37622751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	83	629	0	ENST00000249071.6:c.541C>T	p.Pro181Ser	p.P181S	ENST00000249071	NM_002872.4	181	Ccc/Tcc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936430	49936430	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	155	664	0	ENST00000296474.3:c.1420-2A>G		p.X474_splice	ENST00000296474	NM_002447.2	474																																																																																
SHQ1	55164	MSKCC	GRCh37	3	72842184	72842184	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	16	207	0	ENST00000325599.8:c.1064A>G	p.Lys355Arg	p.K355R	ENST00000325599	NM_018130.2	355	aAa/aGa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884858	134884858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	44	336	1	ENST00000398015.3:c.1634C>T	p.Ser545Leu	p.S545L	ENST00000398015	NM_004441.4	545	tCg/tTg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138402552	138402552	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	85	373	0	ENST00000289153.2:c.2393A>T	p.Asp798Val	p.D798V	ENST00000289153	NM_006219.2	798	gAt/gTt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138456712	138456712	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	30	363	0	ENST00000289153.2:c.638A>G	p.Gln213Arg	p.Q213R	ENST00000289153	NM_006219.2	213	cAa/cGa																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430501	181430501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	137	616	0	ENST00000325404.1:c.353C>T	p.Thr118Met	p.T118M	ENST00000325404	NM_003106.3	118	aCg/aTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540670	187540670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	93	309	0	ENST00000441802.2:c.7070C>T	p.Thr2357Met	p.T2357M	ENST00000441802	NM_005245.3	2357	aCg/aTg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31429619	31429619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	33	541	0	ENST00000344624.3:c.3179C>T	p.Ala1060Val	p.A1060V	ENST00000344624		1060	gCc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112177731	112177731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	75	327	0	ENST00000257430.4:c.6440C>T	p.Pro2147Leu	p.P2147L	ENST00000257430	NM_000038.5	2147	cCa/cTa																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911125	29911125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	35	531	1	ENST00000376809.5:c.424T>C	p.Tyr142His	p.Y142H	ENST00000376809	NM_002116.7	142	Tac/Cac																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157454234	157454234	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150140314		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	136	447	1	ENST00000346085.5:c.2444C>T	p.Ser815Leu	p.S815L	ENST00000346085	NM_020732.3	815	tCg/tTg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6037019	6037020	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	140	412	0	ENST00000265849.7:c.740dup	p.Ser248Ter	p.S248*	ENST00000265849	NM_000535.5	247	cct/ccCt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249166	55249166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	63	490	2	ENST00000275493.2:c.2464G>A	p.Ala822Thr	p.A822T	ENST00000275493	NM_005228.3	822	Gca/Aca																																																																															
MYC	4609	MSKCC	GRCh37	8	128750504	128750504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	71	398	0	ENST00000377970.2:c.41C>T	p.Ala14Val	p.A14V	ENST00000377970	NM_002467.4	14	gCg/gTg																																																																															
TEK	7010	MSKCC	GRCh37	9	27212815	27212815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	129	603	1	ENST00000380036.4:c.2797G>A	p.Ala933Thr	p.A933T	ENST00000380036	NM_000459.3	933	Gcg/Acg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894950	101894950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	68	288	1	ENST00000374994.4:c.503G>A	p.Arg168His	p.R168H	ENST00000374994	NM_004612.2	168	cGc/cAc																																																																															
ABL1	25	MSKCC	GRCh37	9	133738297	133738297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	71	417	0	ENST00000318560.5:c.697G>A	p.Asp233Asn	p.D233N	ENST00000318560	NM_005157.4	233	Gac/Aac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938456	44938456	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	30	474	0	ENST00000377967.4:c.3004A>G	p.Thr1002Ala	p.T1002A	ENST00000377967	NM_021140.2	1002	Aca/Gca																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411330	63411330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	37	601	0	ENST00000330258.3:c.1837G>A	p.Ala613Thr	p.A613T	ENST00000330258	NM_152424.3	613	Gcc/Acc																																																																															
MED12	9968	MSKCC	GRCh37	X	70351416	70351416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	44	549	0	ENST00000374080.3:c.4064C>T	p.Thr1355Ile	p.T1355I	ENST00000374080		1355	aCc/aTc																																																																															
ATRX	546	MSKCC	GRCh37	X	76777814	76777814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	43	563	0	ENST00000373344.5:c.6902G>T	p.Ser2301Ile	p.S2301I	ENST00000373344	NM_000489.3	2301	aGt/aTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0028486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	99	510	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913396		P-0028486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	45	294	1	ENST00000349496.5:c.95A>T	p.Asp32Val	p.D32V	ENST00000349496	NM_001904.3	32	gAc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0028486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	66	736	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038828	47038828	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	109	333	0	ENST00000329236.7:c.604C>T	p.Gln202Ter	p.Q202*	ENST00000329236	NM_001204466.1	202	Cag/Tag																																																																															
CDK8	1024	MSKCC	GRCh37	13	26967567	26967567	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	71	488	0	ENST00000381527.3:c.710G>T	p.Arg237Leu	p.R237L	ENST00000381527	NM_001260.1	237	cGa/cTa																																																																															
MED12	9968	MSKCC	GRCh37	X	70354941	70354941	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0028486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	26	239	0	ENST00000374080.3:c.4864-1G>T		p.X1622_splice	ENST00000374080		1622																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	313	405	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0028490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	200	561	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0028490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	179	373	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
EP300	2033	MSKCC	GRCh37	22	41573203	41573205	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0028490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	181	571	0	ENST00000263253.7:c.5492_5494del	p.Arg1831del	p.R1831del	ENST00000263253	NM_001429.3	1830	AGG/-																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026132	71026132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	84	435	0	ENST00000318789.4:c.1490G>A	p.Arg497Gln	p.R497Q	ENST00000318789	NM_032682.5	497	cGa/cAa																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139820300	139820300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	195	613	1	ENST00000247668.2:c.1453G>A	p.Val485Met	p.V485M	ENST00000247668	NM_021138.3	485	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	35	498	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0028498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	73	755	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0028498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	43	425	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72842185	72842185	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0028498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	32	325	0	ENST00000325599.8:c.1063A>G	p.Lys355Glu	p.K355E	ENST00000325599	NM_018130.2	355	Aaa/Gaa																																																																															
WT1	7490	MSKCC	GRCh37	11	32417814	32417814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	36	445	0	ENST00000332351.3:c.1238G>T	p.Arg413Met	p.R413M	ENST00000332351	NM_024426.4	413	aGg/aTg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	438196	438196	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0028498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	31	323	0	ENST00000399788.2:c.1774-1G>T		p.X592_splice	ENST00000399788	NM_001042603.1	592																																																																																
NKX2-1	7080	MSKCC	GRCh37	14	36988535	36989088	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGTCGTGTGCTTTGGACTCATCGACATGATTCGGCGGCGGCTGGAGGAGGAAGGAAGAGGAGGAAAAAAAAGGGAGAGGGGGAAGGCGAAGCCTCGCTGCTTTTTTTTTCTCCCTTTGCCAAATATTCTGGTGTTACCTTAACGCCGATCTTGTTGGATGTACACGTAACGGAGTGGACCGAGTCCTCCTTAATTGGCTTGAGTGGAGGCTCGGGGGCTGCCTCGCGTTTGTTTTAGCCCGGCGCCAGGTTTTAGGCAGCCACCAGAGGCGGGGCGTAAGCGCTAAAGCAACAAGACAATAGAAGCCTACATCTTGCCCGAGATAATTAGCTTACATGCTGATGACAAGGTAAACACCTTTAAGTTTCACTTGTCAGGATTTTTAGGTCTCAAAGAGAGAGAGAGAGAGGCAGAGACGAGACCCAAAGCATTTCCCCCCTCCCTTGGACACCCCCACCCCCATTTTTTGTGGGGTACCAGCGGAGCGCGGGGAGGAGGTGGAGGGGAGGGGAAGGAGGAGGGAACCGAGAGCGGGGAGGGCAGGAGGTGGGGT	GAGTCGTGTGCTTTGGACTCATCGACATGATTCGGCGGCGGCTGGAGGAGGAAGGAAGAGGAGGAAAAAAAAGGGAGAGGGGGAAGGCGAAGCCTCGCTGCTTTTTTTTTCTCCCTTTGCCAAATATTCTGGTGTTACCTTAACGCCGATCTTGTTGGATGTACACGTAACGGAGTGGACCGAGTCCTCCTTAATTGGCTTGAGTGGAGGCTCGGGGGCTGCCTCGCGTTTGTTTTAGCCCGGCGCCAGGTTTTAGGCAGCCACCAGAGGCGGGGCGTAAGCGCTAAAGCAACAAGACAATAGAAGCCTACATCTTGCCCGAGATAATTAGCTTACATGCTGATGACAAGGTAAACACCTTTAAGTTTCACTTGTCAGGATTTTTAGGTCTCAAAGAGAGAGAGAGAGAGGCAGAGACGAGACCCAAAGCATTTCCCCCCTCCCTTGGACACCCCCACCCCCATTTTTTGTGGGGTACCAGCGGAGCGCGGGGAGGAGGTGGAGGGGAGGGGAAGGAGGAGGGAACCGAGAGCGGGGAGGGCAGGAGGTGGGGT	-			P-0028498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	67	918	0	ENST00000354822.5:c.77+170_118del		p.X26_splice	ENST00000354822	NM_001079668.2	26																																																																																
MGA	23269	MSKCC	GRCh37	15	42042112	42042112	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0028498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	61	609	1	ENST00000219905.7:c.6307A>T	p.Lys2103Ter	p.K2103*	ENST00000219905	NM_001164273.1	2103	Aaa/Taa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138198303	138198303	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	37	348	0	ENST00000237289.4:c.896A>T	p.Lys299Met	p.K299M	ENST00000237289	NM_001270507.1	299	aAg/aTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32905157	32905157	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	174	578	0	ENST00000380152.3:c.783del	p.Ala262GlnfsTer15	p.A262Qfs*15	ENST00000380152		261	gcT/gc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143033724	143033740	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAACATTAAAAAGTA	TCCAACATTAAAAAGTA	ACACAGCATG			P-0028500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	55	547	1	ENST00000262992.4:c.2231_2247delinsCATGCTGTGT	p.Val744AlafsTer57	p.V744Afs*57	ENST00000262992	NM_001101669.1	744	gTACTTTTTAATGTTGGA/gCATGCTGTGT																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345784	152345802	+	frameshift_variant	Frame_Shift_Del	DEL	ACTTTTTAAACAACGTGAA	ACTTTTTAAACAACGTGAA	-			P-0028500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	65	407	0	ENST00000359321.1:c.768_786del	p.Ser257ThrfsTer3	p.S257Tfs*3	ENST00000359321	NM_005431.1	256	gtTTCACGTTGTTTAAAAAGT/gt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	129	576	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22221708	22221709	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCG			P-0028502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	14	73	1	ENST00000215832.6:c.20_22dupCGG	p.Ala7dup	p.A7dup	ENST00000215832	NM_002745.4	7	ggc/gCGGgc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060937	38060937	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	93	406	3	ENST00000250448.2:c.1052C>A	p.Thr351Asn	p.T351N	ENST00000250448	NM_004496.3	351	aCt/aAt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932807	39932807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	174	609	1	ENST00000378444.4:c.1792G>A	p.Val598Met	p.V598M	ENST00000378444	NM_001123385.1	598	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579448	7579448	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	215	585	0	ENST00000269305.4:c.239del	p.Pro80LeufsTer43	p.P80Lfs*43	ENST00000269305	NM_001126112.2	80	cCt/ct																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591147	67591298	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	CTTGATGTAAGTATTTGAAATGGAATCCTATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTGTTCGGCAAAAGAAGTTGAACGAGTGGTTGGG	CTTGATGTAAGTATTTGAAATGGAATCCTATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTGTTCGGCAAAAGAAGTTGAACGAGTGGTTGGG	-			P-0024872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	117	465	0	ENST00000274335.5:c.1741_1797del		p.X581_splice	ENST00000274335		581	taCTTGATGTAAGTATTTGAAATGGAATCCTATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTGTTCGGCAAAAGAAGTTGAACGAGTGGTTGGGc/tac																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355839	73355839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	107	529	0	ENST00000377767.4:c.132G>T	p.Glu44Asp	p.E44D	ENST00000377767	NM_014953.3	44	gaG/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578440	7578440	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs879254249		P-0027998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	363	659	0	ENST00000269305.4:c.490A>G	p.Lys164Glu	p.K164E	ENST00000269305	NM_001126112.2	164	Aag/Gag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983728	15983728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	232	431	0	ENST00000268712.3:c.3394G>A	p.Val1132Ile	p.V1132I	ENST00000268712	NM_006311.3	1132	Gtc/Atc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949102	71949114	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGGCGGGCCAG	GCGGGCGGGCCAG	AA			P-0027998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	126	593	4	ENST00000298229.2:c.3569_3581delinsAA	p.Gly1190GlufsTer21	p.G1190Efs*21	ENST00000298229	NM_001567.3	1190	gGCGGGCGGGCCAGc/gAAc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81971495	81971495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	183	526	0	ENST00000359376.3:c.3185C>T	p.Thr1062Met	p.T1062M	ENST00000359376	NM_002661.3	1062	aCg/aTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576810	67576863	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGAATGAACGACAGCCTGCACCAGGTAATGCTTTTTGAGCATTTAACATTCTC	TGGAATGAACGACAGCCTGCACCAGGTAATGCTTTTTGAGCATTTAACATTCTC	-			P-0027998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	54	369	0	ENST00000274335.5:c.893_916+30del		p.X298_splice	ENST00000274335		298																																																																																
MET	4233	MSKCC	GRCh37	7	116397803	116397803	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	81	514	0	ENST00000397752.3:c.2077G>C	p.Gly693Arg	p.G693R	ENST00000397752	NM_000245.2	693	Ggt/Cgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	11	446	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	147	505	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0028303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	79	255	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0028303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	111	398	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720753	89720768	+	frameshift_variant	Frame_Shift_Del	DEL	AGCATTTGCAGTATAG	AGCATTTGCAGTATAG	-			P-0028303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	10	182	0	ENST00000371953.3:c.907_922del	p.Ile303ValfsTer9	p.I303Vfs*9	ENST00000371953	NM_000314.4	302	AGCATTTGCAGTATAGag/ag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465398	99465398	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	26	464	0	ENST00000268035.6:c.2223del	p.Asp741GlufsTer98	p.D741Efs*98	ENST00000268035	NM_000875.3	741	gaT/ga																																																																															
MALT1	10892	MSKCC	GRCh37	18	56414947	56414947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	134	575	0	ENST00000348428.3:c.2348C>T	p.Pro783Leu	p.P783L	ENST00000348428	NM_006785.3	783	cCa/cTa																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519406	137519406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	73	247	0	ENST00000367739.4:c.1232G>A	p.Gly411Asp	p.G411D	ENST00000367739	NM_000416.2	411	gGt/gAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0028306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	11	182	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
TET2	54790	MSKCC	GRCh37	4	106197362	106197362	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	78	364	0	ENST00000380013.4:c.5695C>G	p.Leu1899Val	p.L1899V	ENST00000380013	NM_001127208.2	1899	Ctc/Gtc																																																																															
CIC	23152	MSKCC	GRCh37	19	42798882	42798882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	218	618	0	ENST00000575354.2:c.4454C>T	p.Pro1485Leu	p.P1485L	ENST00000575354	NM_015125.3	1485	cCg/cTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911618	134911618	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	179	459	0	ENST00000398015.3:c.2083A>T	p.Ile695Phe	p.I695F	ENST00000398015	NM_004441.4	695	Atc/Ttc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921374	178921374	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	93	649	0	ENST00000263967.3:c.856A>C	p.Met286Leu	p.M286L	ENST00000263967	NM_006218.2	286	Atg/Ctg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248166	110248166	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	53	435	0	ENST00000374672.4:c.1306A>G	p.Lys436Glu	p.K436E	ENST00000374672	NM_004235.4	436	Aaa/Gaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	617	600	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	167	324	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	646	633	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968250	134968250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	100	650	1	ENST00000398015.3:c.2763C>A	p.Ser921Arg	p.S921R	ENST00000398015	NM_004441.4	921	agC/agA																																																																															
AGO2	27161	MSKCC	GRCh37	8	141572709	141572709	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	418	499	0	ENST00000220592.5:c.361G>T	p.Gly121Ter	p.G121*	ENST00000220592	NM_012154.3	121	Gga/Tga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65323350	65323350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	221	556	0	ENST00000342505.4:c.1447G>A	p.Glu483Lys	p.E483K	ENST00000342505	NM_002227.2	483	Gag/Aag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468328	120468328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	272	567	0	ENST00000256646.2:c.4111C>T	p.Pro1371Ser	p.P1371S	ENST00000256646	NM_024408.3	1371	Ccc/Tcc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741830	17741830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	100	213	0	ENST00000250003.3:c.501G>T	p.Gln167His	p.Q167H	ENST00000250003	NM_002478.4	167	caG/caT																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67198983	67198983	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	108	426	0	ENST00000312629.5:c.454A>T	p.Ser152Cys	p.S152C	ENST00000312629	NM_003952.2	152	Agt/Tgt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307630	118307631	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	142	418	0	ENST00000534358.1:c.406_407del	p.Ser136ArgfsTer10	p.S136Rfs*10	ENST00000534358	NM_005933.3	135	GAg/g																																																																															
MGA	23269	MSKCC	GRCh37	15	42034911	42034911	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	536	552	0	ENST00000219905.7:c.4753G>T	p.Glu1585Ter	p.E1585*	ENST00000219905	NM_001164273.1	1585	Gag/Tag																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2645846	2645846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	57	568	0	ENST00000342085.4:c.1396C>T	p.Arg466Trp	p.R466W	ENST00000342085	NM_002613.4	466	Cgg/Tgg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222242	2222243	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	517	764	0	ENST00000398665.3:c.3077dup	p.Asp1027ArgfsTer12	p.D1027Rfs*12	ENST00000398665	NM_032482.2	1025	aag/aaGg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023558	31023558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	212	572	0	ENST00000375687.4:c.3043G>A	p.Glu1015Lys	p.E1015K	ENST00000375687	NM_015338.5	1015	Gag/Aag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675418	30675418	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	147	519	0	ENST00000376406.3:c.2938A>G	p.Thr980Ala	p.T980A	ENST00000376406	NM_014641.2	980	Acc/Gcc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323172	31323172	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	78	657	0	ENST00000412585.2:c.817G>C	p.Val273Leu	p.V273L	ENST00000412585	NM_005514.6	273	Gtg/Ctg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168682	32168682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1162	223	699	0	ENST00000375023.3:c.4241C>A	p.Ala1414Glu	p.A1414E	ENST00000375023	NM_004557.3	1414	gCg/gAg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206887	162206887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	227	579	0	ENST00000366898.1:c.788G>T	p.Cys263Phe	p.C263F	ENST00000366898	NM_004562.2	263	tGt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0028337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	35	351	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11186791	11186791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	59	322	0	ENST00000361445.4:c.6414G>T	p.Leu2138Phe	p.L2138F	ENST00000361445	NM_004958.3	2138	ttG/ttT																																																																															
TSC2	7249	MSKCC	GRCh37	16	2106747	2106747	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	40	393	0	ENST00000219476.3:c.751G>T	p.Glu251Ter	p.E251*	ENST00000219476	NM_000548.3	251	Gag/Tag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944273	81944273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	85	528	1	ENST00000359376.3:c.1882G>A	p.Glu628Lys	p.E628K	ENST00000359376	NM_002661.3	628	Gag/Aag																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45796189	45796189	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0028348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	127	518	0	ENST00000372115.3:c.1475T>A	p.Met492Lys	p.M492K	ENST00000372115	NM_001048171.1	492	aTg/aAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577119	7577119	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	125	540	0	ENST00000269305.4:c.819del	p.Val274PhefsTer71	p.V274Ffs*71	ENST00000269305	NM_001126112.2	273	cgT/cg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10251471	10251471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	37	478	0	ENST00000340748.4:c.3461G>T	p.Gly1154Val	p.G1154V	ENST00000340748		1154	gGa/gTa																																																																															
CALR	811	MSKCC	GRCh37	19	13054397	13054397	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	51	491	0	ENST00000316448.5:c.1007A>C	p.Glu336Ala	p.E336A	ENST00000316448	NM_004343.3	336	gAg/gCg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121913255		P-0028351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	97	687	0	ENST00000369535.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0028403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	331	496	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600378	10600378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	748	576	0	ENST00000171111.5:c.1477G>A	p.Glu493Lys	p.E493K	ENST00000171111	NM_203500.1	493	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106154	27106154	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	246	424	0	ENST00000324856.7:c.5765T>G	p.Leu1922Trp	p.L1922W	ENST00000324856	NM_006015.4	1922	tTg/tGg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106178	27106178	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	246	414	0	ENST00000324856.7:c.5789C>A	p.Ser1930Ter	p.S1930*	ENST00000324856	NM_006015.4	1930	tCa/tAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107204	27107204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	228	334	0	ENST00000324856.7:c.6815C>T	p.Ser2272Leu	p.S2272L	ENST00000324856	NM_006015.4	2272	tCa/tTa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932254	36932254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	133	484	0	ENST00000361632.4:c.2215C>A	p.Gln739Lys	p.Q739K	ENST00000361632		739	Cag/Aag																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417916	138417916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	176	344	0	ENST00000289153.2:c.1603C>T	p.Leu535Phe	p.L535F	ENST00000289153	NM_006219.2	535	Ctt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0028405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	203	517	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0028405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	111	341	3	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0028405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	34	247	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117622205	117622205	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	98	317	1	ENST00000368508.3:c.6665del	p.Phe2222SerfsTer2	p.F2222Sfs*2	ENST00000368508	NM_002944.2	2222	tTc/tc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714391	40714391	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	327	419	0	ENST00000373198.4:c.4006T>C	p.Phe1336Leu	p.F1336L	ENST00000373198	NM_133170.3	1336	Ttc/Ctc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63409866	63409866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	60	337	0	ENST00000330258.3:c.3301C>A	p.His1101Asn	p.H1101N	ENST00000330258	NM_152424.3	1101	Cac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	65	336	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	58	539	1	ENST00000326873.7:c.667G>A	p.Glu223Lys	p.E223K	ENST00000326873	NM_000455.4	223	Gag/Aag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46211569	46211570	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	40	233	0	ENST00000334344.6:c.536dup	p.Cys180MetfsTer7	p.C180Mfs*7	ENST00000334344	NM_152641.2	179	gta/gTta																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426298	49426298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	83	600	0	ENST00000301067.7:c.12190G>A	p.Glu4064Lys	p.E4064K	ENST00000301067	NM_003482.3	4064	Gag/Aag																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987091	36987091	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	125	436	1	ENST00000354822.5:c.598C>T	p.Gln200Ter	p.Q200*	ENST00000354822	NM_001079668.2	200	Cag/Tag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509583	106509583	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	51	349	0	ENST00000359195.3:c.1577C>A	p.Pro526Gln	p.P526Q	ENST00000359195	NM_002649.2	526	cCg/cAg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015069	37015069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	46	374	0	ENST00000358127.4:c.335G>T	p.Trp112Leu	p.W112L	ENST00000358127	NM_001280556.1	112	tGg/tTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0026258-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			589	180	596	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041621	14041621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026258-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			494	151	557	0	ENST00000311895.7:c.2168G>A	p.Cys723Tyr	p.C723Y	ENST00000311895	NM_005236.2	723	tGc/tAc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626468	12626468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026258-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			474	129	455	0	ENST00000251849.4:c.1681G>A	p.Val561Met	p.V561M	ENST00000251849	NM_002880.3	561	Gtg/Atg																																																																															
BTK	695	MSKCC	GRCh37	X	100630212	100630212	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	77	320	0	ENST00000308731.7:c.61T>A	p.Ser21Thr	p.S21T	ENST00000308731	NM_000061.2	21	Tca/Aca																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872969	136872969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	71	197	0	ENST00000241393.3:c.529G>A	p.Val177Ile	p.V177I	ENST00000241393	NM_003467.2	177	Gtc/Atc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123227940	123227946	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGATT	GAGGATT	-			P-0028291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	41	261	0	ENST00000218089.9:c.3657_3663del	p.Glu1220LeufsTer12	p.E1220Lfs*12	ENST00000218089	NM_001042749.1	1217	ggGAGGATT/gg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28636134	28636134	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200841206		P-0028296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	323	320	0	ENST00000241453.7:c.238G>A	p.Ala80Thr	p.A80T	ENST00000241453	NM_004119.2	80	Gct/Act																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0028296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	102	295	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	136	192	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748374	43748375	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	CA			P-0028296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	208	419	0	ENST00000382044.4:c.2431_2432delinsTG	p.Glu811Ter	p.E811*	ENST00000382044	NM_001141980.1	811	GAa/TGa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348083	348083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	157	367	0	ENST00000262320.3:c.1423G>A	p.Val475Ile	p.V475I	ENST00000262320	NM_003502.3	475	Gta/Ata																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368209	45368209	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	60	259	0	ENST00000262160.6:c.1393A>C	p.Ser465Arg	p.S465R	ENST00000262160	NM_005901.5	465	Agc/Cgc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395688	45395688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	85	283	0	ENST00000262160.6:c.446G>T	p.Cys149Phe	p.C149F	ENST00000262160	NM_005901.5	149	tGc/tTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952146	178952147	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	33	208	0	ENST00000263967.3:c.3203dupA	p.Asn1068LysfsTer5	p.N1068Kfs*5	ENST00000263967	NM_006218.2	1067	-/A																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118392733	118392733	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	121	356	0	ENST00000534358.1:c.11765A>G	p.Asn3922Ser	p.N3922S	ENST00000534358	NM_005933.3	3922	aAt/aGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68847363	68847363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	103	351	0	ENST00000261769.5:c.1286del	p.Pro429GlnfsTer2	p.P429Qfs*2	ENST00000261769	NM_004360.3	429	Cca/ca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0028360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	38	404	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CBFB	865	MSKCC	GRCh37	16	67100658	67100658	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	167	613	1	ENST00000412916.2:c.356T>A	p.Leu119Gln	p.L119Q	ENST00000412916		119	cTg/cAg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115111972	115111972	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0028360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	174	621	0	ENST00000257566.3:c.1768C>T	p.Gln590Ter	p.Q590*	ENST00000257566	NM_016569.3	590	Cag/Tag																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154760	2154760	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143785521		P-0028360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	164	675	1	ENST00000434045.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000434045	NM_001127598.1	154	cCg/cTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68857311	68857312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	110	357	0	ENST00000261769.5:c.1947dup	p.Ile650TyrfsTer13	p.I650Yfs*13	ENST00000261769	NM_004360.3	649	tct/tcTt																																																																															
CBFB	865	MSKCC	GRCh37	16	67070551	67070551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	26	302	0	ENST00000412916.2:c.175G>T	p.Ala59Ser	p.A59S	ENST00000412916		59	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0028362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	25	684	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0028362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	43	403	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	CT			P-0028362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	45	587	0	ENST00000288602.6:c.1798_1799delGTinsAG	p.Val600Arg	p.V600R	ENST00000288602	NM_004333.4	600	GTg/AGg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32936806	32936806	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	52	513	0	ENST00000380152.3:c.7954del	p.Val2652CysfsTer5	p.V2652Cfs*5	ENST00000380152		2651	aGg/ag																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760743	59760743	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	44	699	0	ENST00000259008.2:c.3664G>C	p.Glu1222Gln	p.E1222Q	ENST00000259008	NM_032043.2	1222	Gaa/Caa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0028365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	96	346	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115779	8115780	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	111	814	2	ENST00000346208.3:c.1131dup	p.Val378SerfsTer3	p.V378Sfs*3	ENST00000346208		375	-/A																																																																															
IRF4	3662	MSKCC	GRCh37	6	407525	407525	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	100	697	0	ENST00000380956.4:c.1283A>G	p.Tyr428Cys	p.Y428C	ENST00000380956	NM_001195286.1	428	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	115	801	0	ENST00000269305.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000269305	NM_001126112.2	273	Cgt/Agt																																																																															
BRAF	673	MSKCC	GRCh37	7	140477837	140477851	+	inframe_deletion	In_Frame_Del	DEL	TAGGTGCTGTCACAT	TAGGTGCTGTCACAT	-			P-0028314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	89	674	0	ENST00000288602.6:c.1457_1471del	p.Asn486_Pro490del	p.N486_P490del	ENST00000288602	NM_004333.4	486	aATGTGACAGCACCTAca/aca																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15826386	15826386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	53	544	0	ENST00000307771.7:c.430G>A	p.Glu144Lys	p.E144K	ENST00000307771	NM_005089.3	144	Gaa/Aaa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981174	201981174	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	67	741	0	ENST00000359651.3:c.253del	p.Tyr85ThrfsTer70	p.Y85Tfs*70	ENST00000359651		85	Tac/ac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426387	49426388	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	107	861	2	ENST00000301067.7:c.12100dup	p.Ser4034PhefsTer6	p.S4034Ffs*6	ENST00000301067	NM_003482.3	4034	tct/tTct																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608466	28608466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	113	664	0	ENST00000241453.7:c.1676C>A	p.Thr559Asn	p.T559N	ENST00000241453	NM_004119.2	559	aCc/aAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971097	21971098	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGGCAG			P-0028314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	36	249	0	ENST00000304494.5:c.254_260dup	p.Glu88CysfsTer34	p.E88Cfs*34	ENST00000304494	NM_000077.4	87	cgg/cgCTGCCCGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0028315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	403	783	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175796	176175796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	160	466	0	ENST00000367669.3:c.319G>T	p.Gly107Cys	p.G107C	ENST00000367669	NM_022457.5	107	Ggc/Tgc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	432296	432296	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	269	605	2	ENST00000399788.2:c.2227del	p.Val743SerfsTer18	p.V743Sfs*18	ENST00000399788	NM_001042603.1	743	Gtc/tc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424972	49424973	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0028315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	352	621	0	ENST00000301067.7:c.13515_13516insAC	p.Pro4506ThrfsTer14	p.P4506Tfs*14	ENST00000301067	NM_003482.3	4505	-/AC																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343492	343492	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	322	650	0	ENST00000262320.3:c.2182C>T	p.Gln728Ter	p.Q728*	ENST00000262320	NM_003502.3	728	Cag/Tag																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99203974	99203993	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGAAGTCGCAAATATGCA	TTGGAAGTCGCAAATATGCA	-			P-0028315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	104	519	0	ENST00000074304.5:c.2839_2858del	p.Gly947Ter	p.G947*	ENST00000074304	NM_001134224.1	946	gTTGGAAGTCGCAAATATGCA/g																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098809	178098809	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	508	714	0	ENST00000397062.3:c.236A>C	p.Glu79Ala	p.E79A	ENST00000397062	NM_006164.4	79	gAg/gCg																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020882	26020882	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0028315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	203	369	0	ENST00000357647.3:c.165T>G	p.Tyr55Ter	p.Y55*	ENST00000357647	NM_003529.2	55	taT/taG																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056440	26056440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	69	263	0	ENST00000343677.2:c.217G>A	p.Val73Met	p.V73M	ENST00000343677	NM_005319.3	73	Gtg/Atg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324085	31324085	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	177	287	1	ENST00000412585.2:c.478G>T	p.Ala160Ser	p.A160S	ENST00000412585	NM_005514.6	160	Gcg/Tcg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239083	98239083	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	316	639	0	ENST00000331920.6:c.1560C>G	p.His520Gln	p.H520Q	ENST00000331920	NM_000264.3	520	caC/caG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0028322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	104	355	1	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0028322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	292	693	2	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
MPL	4352	MSKCC	GRCh37	1	43806149	43806149	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	133	632	0	ENST00000372470.3:c.945C>G	p.Phe315Leu	p.F315L	ENST00000372470	NM_005373.2	315	ttC/ttG																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45872241	45872242	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CGGATATGCCTGCCGATAACAAGCGGACTCAGTCCCTGTCCCGCCC			P-0028322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	74	798	0	ENST00000391945.4:c.184-37_192dup	p.Leu65GlyfsTer6	p.L65Gfs*6	ENST00000391945	NM_000400.3	64	-/GGGCGGGACAGGGACTGAGTCCGCTTGTTATCGGCAGGCATATCCG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	47	499	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519816		P-0028332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	56	608	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																															
MAX	4149	MSKCC	GRCh37	14	65544677	65544677	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	75	609	0	ENST00000358664.4:c.249A>T	p.Gln83His	p.Q83H	ENST00000358664	NM_002382.4	83	caA/caT																																																																															
ATRX	546	MSKCC	GRCh37	X	76938554	76938554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	37	443	1	ENST00000373344.5:c.2194G>A	p.Asp732Asn	p.D732N	ENST00000373344	NM_000489.3	732	Gat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0028334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	57	412	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	73	478	0	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767326		P-0028334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	30	253	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244453	46244454	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	46	438	0	ENST00000334344.6:c.2552dup	p.Gln852ThrfsTer99	p.Q852Tfs*99	ENST00000334344	NM_152641.2	849	-/C																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942029	44942030	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	37	165	0	ENST00000377967.4:c.3284dup	p.Trp1096ValfsTer7	p.W1096Vfs*7	ENST00000377967	NM_021140.2	1093	-/A																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143033774	143033774	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	62	424	0	ENST00000262992.4:c.2197A>G	p.Ile733Val	p.I733V	ENST00000262992	NM_001101669.1	733	Att/Gtt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520512	176520512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	57	574	1	ENST00000292408.4:c.1357G>A	p.Asp453Asn	p.D453N	ENST00000292408	NM_213647.1	453	Gat/Aat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970975	21970976	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0028334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	95	397	0	ENST00000304494.5:c.382_383insTA	p.Arg128LeufsTer19	p.R128Lfs*19	ENST00000304494	NM_000077.4	128	cgg/cTAgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579714	7579714	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	381	582	1	ENST00000269305.4:c.82del	p.Glu28LysfsTer16	p.E28Kfs*16	ENST00000269305	NM_001126112.2	28	Gaa/aa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865006	57865006	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	116	723	0	ENST00000228682.2:c.2483G>C	p.Gly828Ala	p.G828A	ENST00000228682	NM_005269.2	828	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	481	760	0	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905112	50905112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	315	799	0	ENST00000440232.2:c.394G>A	p.Asp132Asn	p.D132N	ENST00000440232	NM_002691.3	132	Gat/Aat																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508860	106508860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	278	553	0	ENST00000359195.3:c.854C>T	p.Thr285Met	p.T285M	ENST00000359195	NM_002649.2	285	aCg/aTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65321216	65321216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	288	444	0	ENST00000342505.4:c.1624C>T	p.Arg542Cys	p.R542C	ENST00000342505	NM_002227.2	542	Cgc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42040892	42040892	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1463241547		P-0028375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	52	543	0	ENST00000219905.7:c.5270G>A	p.Arg1757His	p.R1757H	ENST00000219905	NM_001164273.1	1757	cGt/cAt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276825	15276825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	277	742	1	ENST00000263388.2:c.5440G>A	p.Asp1814Asn	p.D1814N	ENST00000263388	NM_000435.2	1814	Gat/Aat																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349870	15349870	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0028375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	274	482	0	ENST00000263377.2:c.3782G>T	p.Arg1261Met	p.R1261M	ENST00000263377	NM_058243.2	1261	aGg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175496	112175506	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGCTCCGTT	CCAGCTCCGTT	A			P-0028375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	283	389	0	ENST00000257430.4:c.4205_4215delinsA	p.Ala1402AspfsTer10	p.A1402Dfs*10	ENST00000257430	NM_000038.5	1402	gCCAGCTCCGTT/gA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0028091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	32	392	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0028092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	169	610	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0028092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	43	515	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0028092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	38	430	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
RET	5979	MSKCC	GRCh37	10	43607552	43607552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	32	578	0	ENST00000355710.3:c.1528G>T	p.Ala510Ser	p.A510S	ENST00000355710	NM_020975.4	510	Gcc/Tcc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038846	47038846	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	64	375	1	ENST00000329236.7:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000329236	NM_001204466.1	208	Caa/Taa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356175	66356175	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	45	554	0	ENST00000273854.3:c.1322T>C	p.Ile441Thr	p.I441T	ENST00000273854	NM_004439.5	441	aTt/aCt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873670	35873670	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	32	427	0	ENST00000303115.3:c.626C>G	p.Pro209Arg	p.P209R	ENST00000303115	NM_002185.3	209	cCt/cGt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513358	106513359	+	missense_variant	Missense_Mutation	DNP	TG	TG	GA			P-0028092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	63	358	0	ENST00000359195.3:c.2262_2263delinsGA	p.Glu755Lys	p.E755K	ENST00000359195	NM_002649.2	754	gcTGaa/gcGAaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0028096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	180	544	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038783	47038783	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	107	351	0	ENST00000329236.7:c.559G>T	p.Glu187Ter	p.E187*	ENST00000329236	NM_001204466.1	187	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579485	7579485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	93	716	1	ENST00000269305.4:c.202G>T	p.Glu68Ter	p.E68*	ENST00000269305	NM_001126112.2	68	Gag/Tag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18544091	18544091	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	142	405	0	ENST00000266497.5:c.1908A>T	p.Lys636Asn	p.K636N	ENST00000266497		636	aaA/aaT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420852	49420852	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	165	504	0	ENST00000301067.7:c.14897G>T	p.Arg4966Leu	p.R4966L	ENST00000301067	NM_003482.3	4966	cGg/cTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2135245	2135245	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs199848388		P-0028096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	125	743	1	ENST00000219476.3:c.4584G>T	p.Glu1528Asp	p.E1528D	ENST00000219476	NM_000548.3	1528	gaG/gaT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993856	72993856	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	44	377	1	ENST00000268489.5:c.189G>T	p.Glu63Asp	p.E63D	ENST00000268489	NM_006885.3	63	gaG/gaT																																																																															
NF1	4763	MSKCC	GRCh37	17	29560032	29560032	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	54	346	0	ENST00000358273.4:c.3509A>T	p.His1170Leu	p.H1170L	ENST00000358273	NM_001042492.2	1170	cAc/cTc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627721	37627721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	145	758	0	ENST00000447079.4:c.1636C>T	p.Pro546Ser	p.P546S	ENST00000447079	NM_015083.1	546	Cct/Tct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210935	36210935	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1393	97	692	1	ENST00000222270.7:c.686G>T	p.Gly229Val	p.G229V	ENST00000222270	NM_014727.1	229	gGc/gTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168700	32168700	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	100	778	1	ENST00000375023.3:c.4223T>A	p.Leu1408Gln	p.L1408Q	ENST00000375023	NM_004557.3	1408	cTa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0028269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	25	495	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	37	684	0	ENST00000269305.4:c.800G>C	p.Arg267Pro	p.R267P	ENST00000269305	NM_001126112.2	267	cGg/cCg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427557	49427557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	46	587	0	ENST00000301067.7:c.10931C>T	p.Pro3644Leu	p.P3644L	ENST00000301067	NM_003482.3	3644	cCa/cTa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031912	10031912	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	32	678	0	ENST00000330684.3:c.911C>A	p.Ser304Tyr	p.S304Y	ENST00000330684	NM_001134407.1	304	tCt/tAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602722	10602772	+	inframe_deletion	In_Frame_Del	DEL	GCAGCTGCATCTGCAGGAAGTTCGGCGTCAACGAGTGGCAGCGCACGGCCC	GCAGCTGCATCTGCAGGAAGTTCGGCGTCAACGAGTGGCAGCGCACGGCCC	-			P-0028269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	47	805	1	ENST00000171111.5:c.806_856del	p.Arg269_Leu285del	p.R269_L285del	ENST00000171111	NM_203500.1	269	cGGGCCGTGCGCTGCCACTCGTTGACGCCGAACTTCCTGCAGATGCAGCTGCag/cag																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308049	30308050	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0028269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	31	471	0	ENST00000262643.3:c.186_187delinsTT	p.Trp62_Asp63delinsCysTyr	p.W62_D63delinsCY	ENST00000262643	NM_001238.2	62	tgGGac/tgTTac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0028272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	225	514	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
POLE	5426	MSKCC	GRCh37	12	133219225	133219241	+	frameshift_variant	Frame_Shift_Del	DEL	GGAATTCCTCCAAGACA	GGAATTCCTCCAAGACA	-			P-0028272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	55	702	0	ENST00000320574.5:c.4803_4819del	p.Val1602ThrfsTer8	p.V1602Tfs*8	ENST00000320574	NM_006231.2	1601	ccTGTCTTGGAGGAATTCCca/ccca																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64288934	64288934	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0028272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	66	436	0	ENST00000370651.3:c.329+1G>A		p.X110_splice	ENST00000370651	NM_003463.4	110																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0027615-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			582	171	568	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075211	16075217	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTGTT	ACCTGTT	-			P-0027615-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			476	97	384	0	ENST00000268712.3:c.335_341del	p.Glu112ValfsTer16	p.E112Vfs*16	ENST00000268712	NM_006311.3	112	gAACAGGTt/gt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246527	41246527	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027615-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			634	154	567	0	ENST00000357654.3:c.1021G>C	p.Asp341His	p.D341H	ENST00000357654	NM_007294.3	341	Gat/Cat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573560	48573560	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027615-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	45	297	0	ENST00000342988.3:c.144G>T	p.Lys48Asn	p.K48N	ENST00000342988	NM_005359.5	48	aaG/aaT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212568876	212568876	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027615-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			486	87	444	0	ENST00000342788.4:c.1242C>A	p.Phe414Leu	p.F414L	ENST00000342788	NM_005235.2	414	ttC/ttA																																																																															
TERT	7015	MSKCC	GRCh37	5	1264625	1264625	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027615-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			633	100	663	0	ENST00000310581.5:c.2737G>T	p.Ala913Ser	p.A913S	ENST00000310581	NM_198253.2	913	Gcc/Tcc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797767	32797767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027615-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			617	47	501	1	ENST00000374899.4:c.1735G>A	p.Ala579Thr	p.A579T	ENST00000374899	NM_018833.2	579	Gct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	115	523	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	141	813	0	ENST00000269305.4:c.638G>C	p.Arg213Pro	p.R213P	ENST00000269305	NM_001126112.2	213	cGa/cCa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922297	39922297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	26	392	0	ENST00000378444.4:c.3875C>T	p.Pro1292Leu	p.P1292L	ENST00000378444	NM_001123385.1	1292	cCc/cTc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69028127	69028127	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	102	825	0	ENST00000288368.4:c.3286G>T	p.Asp1096Tyr	p.D1096Y	ENST00000288368	NM_024870.2	1096	Gat/Tat																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435523	18435523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	68	373	0	ENST00000266497.5:c.508G>A	p.Gly170Arg	p.G170R	ENST00000266497		170	Gga/Aga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431673	49431673	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	162	816	0	ENST00000301067.7:c.9466C>G	p.Pro3156Ala	p.P3156A	ENST00000301067	NM_003482.3	3156	Cca/Gca																																																																															
POLE	5426	MSKCC	GRCh37	12	133210810	133210811	+	missense_variant	Missense_Mutation	DNP	GC	GC	CT			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	61	721	1	ENST00000320574.5:c.5965_5966delinsAG	p.Ala1989Arg	p.A1989R	ENST00000320574	NM_006231.2	1989	GCa/AGa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39595442	39595442	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	36	391	0	ENST00000262039.4:c.1330del	p.Gln444LysfsTer3	p.Q444Kfs*3	ENST00000262039	NM_002647.2	443	tCc/tc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222550	2222550	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	97	663	0	ENST00000398665.3:c.3382A>C	p.Asn1128His	p.N1128H	ENST00000398665	NM_032482.2	1128	Aac/Cac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292520	15292520	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	146	860	2	ENST00000263388.2:c.2659G>T	p.Asp887Tyr	p.D887Y	ENST00000263388	NM_000435.2	887	Gat/Tat																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101005	41101005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	114	665	0	ENST00000373198.4:c.1351G>T	p.Gly451Cys	p.G451C	ENST00000373198	NM_133170.3	451	Ggc/Tgc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747945	41747945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	30	273	0	ENST00000226382.2:c.824C>A	p.Pro275His	p.P275H	ENST00000226382	NM_003924.3	275	cCc/cAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144642	55144642	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	54	486	0	ENST00000257290.5:c.2116G>T	p.Asp706Tyr	p.D706Y	ENST00000257290	NM_006206.4	706	Gat/Tat																																																																															
KDR	3791	MSKCC	GRCh37	4	55961763	55961763	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	59	569	0	ENST00000263923.4:c.2798A>T	p.Asn933Ile	p.N933I	ENST00000263923	NM_002253.2	933	aAt/aTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518061	187518061	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	79	708	0	ENST00000441802.2:c.12633del	p.Lys4211AsnfsTer27	p.K4211Nfs*27	ENST00000441802	NM_005245.3	4211	aaG/aa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524498	187524498	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	97	727	0	ENST00000441802.2:c.11182G>T	p.Val3728Phe	p.V3728F	ENST00000441802	NM_005245.3	3728	Gtt/Ttt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30676052	30676052	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	56	560	0	ENST00000376406.3:c.2304T>A	p.Phe768Leu	p.F768L	ENST00000376406	NM_014641.2	768	ttT/ttA																																																																															
PRDM1	639	MSKCC	GRCh37	6	106554887	106554887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	112	633	2	ENST00000369096.4:c.2004C>A	p.Phe668Leu	p.F668L	ENST00000369096	NM_001198.3	668	ttC/ttA																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194643	29194643	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	93	920	0	ENST00000240100.2:c.1085C>A	p.Ser362Ter	p.S362*	ENST00000240100	NM_001394.6	362	tCg/tAg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249415	110249416	+	missense_variant	Missense_Mutation	DNP	TC	TC	CA			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	190	1134	1	ENST00000374672.4:c.1157_1158delinsTG	p.Arg386Leu	p.R386L	ENST00000374672	NM_004235.4	386	cGA/cTG																																																																															
ATRX	546	MSKCC	GRCh37	X	76778754	76778754	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	92	589	1	ENST00000373344.5:c.6825G>T	p.Trp2275Cys	p.W2275C	ENST00000373344	NM_000489.3	2275	tgG/tgT																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71161722	71161722	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	26	364	1	ENST00000318789.4:c.247T>A	p.Ser83Thr	p.S83T	ENST00000318789	NM_032682.5	83	Tct/Act																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933533	39933533	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	48	751	0	ENST00000378444.4:c.1066G>T	p.Glu356Ter	p.E356*	ENST00000378444	NM_001123385.1	356	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0028102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	268	623	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101867538	101867546	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-			P-0028102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	10	27	0	ENST00000374994.4:c.70_78delGCGGCGGCG	p.Ala24_Ala26del	p.A24_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCGGCg/ctg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55136825	55136825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	54	464	1	ENST00000257290.5:c.1147C>T	p.Arg383Cys	p.R383C	ENST00000257290	NM_006206.4	383	Cgt/Tgt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945591	151945591	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	29	252	0	ENST00000262189.6:c.1928T>C	p.Ile643Thr	p.I643T	ENST00000262189	NM_170606.2	643	aTt/aCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0028195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	119	518	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65305462	65305462	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	68	404	0	ENST00000342505.4:c.2666T>C	p.Val889Ala	p.V889A	ENST00000342505	NM_002227.2	889	gTt/gCt																																																																															
ATM	472	MSKCC	GRCh37	11	108201008	108201008	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	55	456	1	ENST00000278616.4:c.7375C>A	p.Arg2459Ser	p.R2459S	ENST00000278616	NM_000051.3	2459	Cgt/Agt																																																																															
POLE	5426	MSKCC	GRCh37	12	133245480	133245480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	165	651	0	ENST00000320574.5:c.1840C>A	p.Pro614Thr	p.P614T	ENST00000320574	NM_006231.2	614	Ccc/Acc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647412	23647412	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	93	497	0	ENST00000261584.4:c.455del	p.Lys152ArgfsTer25	p.K152Rfs*25	ENST00000261584	NM_024675.3	152	aAg/ag																																																																															
INSR	3643	MSKCC	GRCh37	19	7143100	7143100	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0028195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	58	529	0	ENST00000302850.5:c.2269C>G	p.Pro757Ala	p.P757A	ENST00000302850	NM_000208.2	757	Cca/Gca																																																																															
CD79A	973	MSKCC	GRCh37	19	42383281	42383281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	119	675	0	ENST00000221972.3:c.301G>T	p.Gly101Trp	p.G101W	ENST00000221972	NM_021601.3	101	Ggg/Tgg																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260308	149260308	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	151	879	0	ENST00000360632.3:c.585C>G	p.His195Gln	p.H195Q	ENST00000360632	NM_015472.4	195	caC/caG																																																																															
KDR	3791	MSKCC	GRCh37	4	55958812	55958812	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	102	590	0	ENST00000263923.4:c.3041A>C	p.Lys1014Thr	p.K1014T	ENST00000263923	NM_002253.2	1014	aAg/aCg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0028196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	619	562	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578400	7578400	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs751477326		P-0028196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	71	563	0	ENST00000269305.4:c.530C>G	p.Pro177Arg	p.P177R	ENST00000269305	NM_001126112.2	177	cCc/cGc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430042	78430042	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0028196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	39	232	0	ENST00000370768.2:c.838-1G>T		p.X280_splice	ENST00000370768	NM_003902.3	280																																																																																
ARID2	196528	MSKCC	GRCh37	12	46285871	46285871	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	69	461	0	ENST00000334344.6:c.5140del	p.Ser1714LeufsTer7	p.S1714Lfs*7	ENST00000334344	NM_152641.2	1713	tcT/tc																																																																															
HGF	3082	MSKCC	GRCh37	7	81355315	81355315	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	43	283	0	ENST00000222390.5:c.1059C>A	p.Tyr353Ter	p.Y353*	ENST00000222390	NM_000601.4	353	taC/taA																																																																															
MED12	9968	MSKCC	GRCh37	X	70349625	70349625	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	52	605	1	ENST00000374080.3:c.3787C>A	p.Gln1263Lys	p.Q1263K	ENST00000374080		1263	Cag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	49	470	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0028198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	57	397	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0028201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	226	564	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	188	521	2	ENST00000269305.4:c.797del	p.Gly266AspfsTer79	p.G266Dfs*79	ENST00000269305	NM_001126112.2	266	gGa/ga																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971304	13971304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	213	369	0	ENST00000405192.2:c.625C>T	p.Pro209Ser	p.P209S	ENST00000405192	NM_001163147.1	209	Cct/Tct																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0028202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	88	334	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0028202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	75	491	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0028202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	40	397	0	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
SETD2	29072	MSKCC	GRCh37	3	47161862	47161862	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	48	347	0	ENST00000409792.3:c.4264C>T	p.Gln1422Ter	p.Q1422*	ENST00000409792	NM_014159.6	1422	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830615	72830615	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	89	570	0	ENST00000268489.5:c.5966G>C	p.Gly1989Ala	p.G1989A	ENST00000268489	NM_006885.3	1989	gGc/gCc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0028203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	145	469	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0028203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	128	512	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ATM	472	MSKCC	GRCh37	11	108206585	108206585	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	126	357	0	ENST00000278616.4:c.8165del	p.Leu2722ArgfsTer29	p.L2722Rfs*29	ENST00000278616	NM_000051.3	2722	cTg/cg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665027	138665027	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	50	135	0	ENST00000330315.3:c.538G>C	p.Gly180Arg	p.G180R	ENST00000330315	NM_023067.3	180	Ggc/Cgc																																																																															
KIT	3815	MSKCC	GRCh37	4	55569972	55569972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	128	380	0	ENST00000288135.5:c.839C>T	p.Ala280Val	p.A280V	ENST00000288135	NM_000222.2	280	gCg/gTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153259045	153259046	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0028203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	66	250	0	ENST00000281708.4:c.769_770del	p.Ile257Ter	p.I257*	ENST00000281708	NM_033632.3	257	ATt/t																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100117	157100119	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs1450867853		P-0028204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	10	42	0	ENST00000346085.5:c.1069_1071del	p.Gly357del	p.G357del	ENST00000346085	NM_020732.3	352	GGC/-																																																																															
CASP8	841	MSKCC	GRCh37	2	202149893	202149893	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0028204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	40	418	0	ENST00000358485.4:c.1334C>G	p.Ser445Ter	p.S445*	ENST00000358485	NM_001080125.1	445	tCa/tGa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044713	47044713	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	77	335	0	ENST00000329236.7:c.1879G>T	p.Glu627Ter	p.E627*	ENST00000329236	NM_001204466.1	627	Gag/Tag																																																																															
MET	4233	MSKCC	GRCh37	7	116411879	116411900	+	splice_region_variant,intron_variant	Splice_Region	DEL	CTCTTTCTTTCTCTCTGTTTTA	CTCTTTCTTTCTCTCTGTTTTA	-			P-0028204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1186	244	833	0	ENST00000397752.3:c.2888-24_2888-3del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
MDM4	4194	MSKCC	GRCh37	1	204512035	204512035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	31	323	0	ENST00000367182.3:c.635C>T	p.Pro212Leu	p.P212L	ENST00000367182	NM_001278516.1	212	cCt/cTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29557390	29557390	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	27	176	0	ENST00000358273.4:c.3103A>T	p.Met1035Leu	p.M1035L	ENST00000358273	NM_001042492.2	1035	Atg/Ttg																																																																															
KDR	3791	MSKCC	GRCh37	4	55981462	55981462	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs545112274		P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	41	536	0	ENST00000263923.4:c.475G>A	p.Val159Met	p.V159M	ENST00000263923	NM_002253.2	159	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	117	641	0	ENST00000269305.4:c.733G>C	p.Gly245Arg	p.G245R	ENST00000269305	NM_001126112.2	245	Ggc/Cgc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713609	30713609	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	68	505	0	ENST00000359013.4:c.1009G>T	p.Glu337Ter	p.E337*	ENST00000359013	NM_001024847.2	337	Gag/Tag																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867550	35867550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	36	434	0	ENST00000303115.3:c.364G>T	p.Asp122Tyr	p.D122Y	ENST00000303115	NM_002185.3	122	Gac/Tac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120699	115120699	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	82	781	0	ENST00000257566.3:c.307C>A	p.Pro103Thr	p.P103T	ENST00000257566	NM_016569.3	103	Ccc/Acc																																																																															
BCL6	604	MSKCC	GRCh37	3	187440334	187440334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	51	500	1	ENST00000232014.4:c.2033G>A	p.Arg678His	p.R678H	ENST00000232014	NM_001130845.1	678	cGc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259321	16259321	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	31	396	0	ENST00000375759.3:c.6586G>T	p.Glu2196Ter	p.E2196*	ENST00000375759	NM_015001.2	2196	Gag/Tag																																																																															
RB1	5925	MSKCC	GRCh37	13	49039464	49039464	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	120	568	0	ENST00000267163.4:c.2449G>T	p.Glu817Ter	p.E817*	ENST00000267163	NM_000321.2	817	Gaa/Taa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244590	41244590	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	37	664	0	ENST00000357654.3:c.2958C>G	p.Ile986Met	p.I986M	ENST00000357654	NM_007294.3	986	atC/atG																																																																															
INSR	3643	MSKCC	GRCh37	19	7122730	7122730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	39	752	0	ENST00000302850.5:c.3424G>A	p.Glu1142Lys	p.E1142K	ENST00000302850	NM_000208.2	1142	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101702	27101702	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	115	818	0	ENST00000324856.7:c.4984A>G	p.Lys1662Glu	p.K1662E	ENST00000324856	NM_006015.4	1662	Aaa/Gaa																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400857	72400857	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	54	415	0	ENST00000357731.5:c.314T>A	p.Ile105Lys	p.I105K	ENST00000357731	NM_173808.2	105	aTa/aAa																																																																															
BCL10	8915	MSKCC	GRCh37	1	85736544	85736544	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	39	305	0	ENST00000370580.1:c.103G>C	p.Glu35Gln	p.E35Q	ENST00000370580	NM_003921.4	35	Gag/Cag																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176050378	176050378	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	158	525	0	ENST00000367669.3:c.1187T>G	p.Leu396Trp	p.L396W	ENST00000367669	NM_022457.5	396	tTg/tGg																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226252131	226252131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	26	87	0	ENST00000366813.1:c.79C>T	p.Arg27Cys	p.R27C	ENST00000366813		27	Cgc/Tgc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852308	63852308	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	76	631	0	ENST00000279873.7:c.3088del	p.Ala1030GlnfsTer5	p.A1030Qfs*5	ENST00000279873	NM_032199.2	1029	cGg/cg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123276970	123276970	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	28	396	0	ENST00000358487.5:c.947G>C	p.Gly316Ala	p.G316A	ENST00000358487	NM_000141.4	316	gGt/gCt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373748	118373748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	48	442	0	ENST00000534358.1:c.7141G>A	p.Asp2381Asn	p.D2381N	ENST00000534358	NM_005933.3	2381	Gat/Aat																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118380664	118380664	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T	rs113003878		P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	46	399	0	ENST00000534358.1:c.10902A>T	p.Glu3634Asp	p.E3634D	ENST00000534358	NM_005933.3	3634	gaA/gaT																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244263	46244263	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	49	409	0	ENST00000334344.6:c.2357G>T	p.Gly786Val	p.G786V	ENST00000334344	NM_152641.2	786	gGc/gTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434509	49434509	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	53	775	0	ENST00000301067.7:c.7044G>T	p.Arg2348Ser	p.R2348S	ENST00000301067	NM_003482.3	2348	agG/agT																																																																															
POLE	5426	MSKCC	GRCh37	12	133219308	133219308	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	34	630	0	ENST00000320574.5:c.4736G>C	p.Arg1579Pro	p.R1579P	ENST00000320574	NM_006231.2	1579	cGc/cCc																																																																															
POLE	5426	MSKCC	GRCh37	12	133250211	133250211	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	53	643	0	ENST00000320574.5:c.1309G>C	p.Val437Leu	p.V437L	ENST00000320574	NM_006231.2	437	Gtg/Ctg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396943	396943	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	45	784	0	ENST00000262320.3:c.83A>G	p.Glu28Gly	p.E28G	ENST00000262320	NM_003502.3	28	gAg/gGg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50827554	50827554	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	33	519	0	ENST00000398568.2:c.2439T>G	p.Phe813Leu	p.F813L	ENST00000398568	NM_001042412.1	813	ttT/ttG																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40368037	40368037	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	91	594	0	ENST00000293328.3:c.1468G>T	p.Glu490Ter	p.E490*	ENST00000293328	NM_012448.3	490	Gag/Tag																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475042	40475042	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	119	593	0	ENST00000264657.5:c.1868G>T	p.Trp623Leu	p.W623L	ENST00000264657	NM_139276.2	623	tGg/tTg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243854	41243854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	64	610	0	ENST00000357654.3:c.3694G>T	p.Gly1232Cys	p.G1232C	ENST00000357654	NM_007294.3	1232	Ggt/Tgt																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804358	46804358	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	98	542	1	ENST00000290295.7:c.649C>A	p.Arg217Ser	p.R217S	ENST00000290295	NM_006361.5	217	Cgc/Agc																																																																															
MSI2	124540	MSKCC	GRCh37	17	55752461	55752461	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	141	772	1	ENST00000284073.2:c.919G>T	p.Gly307Cys	p.G307C	ENST00000284073	NM_138962.2	307	Ggc/Tgc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436071	56436071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	92	564	0	ENST00000407977.2:c.1066G>T	p.Ala356Ser	p.A356S	ENST00000407977		356	Gcc/Tcc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532440	63532440	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	154	630	0	ENST00000307078.5:c.2139G>T	p.Gln713His	p.Q713H	ENST00000307078	NM_004655.3	713	caG/caT																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66521894	66521894	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	76	282	1	ENST00000358598.2:c.550-1G>T		p.X184_splice	ENST00000358598	NM_212471.2	184																																																																																
SMAD2	4087	MSKCC	GRCh37	18	45422905	45422905	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	24	320	0	ENST00000262160.6:c.223G>T	p.Val75Phe	p.V75F	ENST00000262160	NM_005901.5	75	Gtt/Ttt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602863	10602863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	183	883	2	ENST00000171111.5:c.715G>T	p.Val239Leu	p.V239L	ENST00000171111	NM_203500.1	239	Gtg/Ttg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082766	16082766	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	13	143	0	ENST00000281043.3:c.580C>A	p.Pro194Thr	p.P194T	ENST00000281043	NM_005378.4	194	Ccc/Acc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9525109	9525109	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	37	523	1	ENST00000353224.5:c.1776A>T	p.Gln592His	p.Q592H	ENST00000353224	NM_177990.2	592	caA/caT																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30309749	30309749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	67	499	0	ENST00000307677.4:c.273G>T	p.Arg91Ser	p.R91S	ENST00000307677	NM_138578.1	91	agG/agT																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259281	36259281	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	47	339	0	ENST00000300305.3:c.210G>T	p.Lys70Asn	p.K70N	ENST00000300305		70	aaG/aaT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163212	47163212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	81	449	0	ENST00000409792.3:c.2914G>A	p.Glu972Lys	p.E972K	ENST00000409792	NM_014159.6	972	Gaa/Aaa																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73096506	73096506	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	61	302	0	ENST00000356692.5:c.286G>C	p.Gly96Arg	p.G96R	ENST00000356692		96	Ggt/Cgt																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119642266	119642266	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	60	548	0	ENST00000316626.5:c.431G>C	p.Arg144Thr	p.R144T	ENST00000316626		144	aGa/aCa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911502	134911502	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	126	609	0	ENST00000398015.3:c.1967G>C	p.Gly656Ala	p.G656A	ENST00000398015	NM_004441.4	656	gGg/gCg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138382765	138382765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	81	506	1	ENST00000289153.2:c.2779G>A	p.Val927Ile	p.V927I	ENST00000289153	NM_006219.2	927	Gtc/Atc																																																																															
ATR	545	MSKCC	GRCh37	3	142188232	142188232	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	63	435	1	ENST00000350721.4:c.6499G>T	p.Val2167Leu	p.V2167L	ENST00000350721	NM_001184.3	2167	Gta/Tta																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66242756	66242756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	28	384	0	ENST00000273854.3:c.1816G>T	p.Ala606Ser	p.A606S	ENST00000273854	NM_004439.5	606	Gct/Tct																																																																															
IRF4	3662	MSKCC	GRCh37	6	398826	398826	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	76	421	0	ENST00000380956.4:c.638-2A>T		p.X213_splice	ENST00000380956	NM_001195286.1	213																																																																																
HIST1H3C	8352	MSKCC	GRCh37	6	26045825	26045825	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	73	514	0	ENST00000540144.1:c.187A>G	p.Ile63Val	p.I63V	ENST00000540144	NM_003531.2	63	Atc/Gtc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117704486	117704486	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	21	318	0	ENST00000368508.3:c.2490del	p.Lys832ArgfsTer2	p.K832Rfs*2	ENST00000368508	NM_002944.2	830	ggG/gg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2963901	2963901	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	177	672	0	ENST00000396946.4:c.1906G>T	p.Val636Phe	p.V636F	ENST00000396946	NM_032415.4	636	Gtc/Ttc																																																																															
HGF	3082	MSKCC	GRCh37	7	81381533	81381533	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	93	291	0	ENST00000222390.5:c.528C>G	p.Tyr176Ter	p.Y176*	ENST00000222390	NM_000601.4	176	taC/taG																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509831	106509831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	177	696	1	ENST00000359195.3:c.1825C>A	p.Gln609Lys	p.Q609K	ENST00000359195	NM_002649.2	609	Caa/Aaa																																																																															
SMO	6608	MSKCC	GRCh37	7	128845160	128845160	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	112	781	1	ENST00000249373.3:c.654G>T	p.Gln218His	p.Q218H	ENST00000249373	NM_005631.4	218	caG/caT																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187398	38187398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	40	461	0	ENST00000317025.8:c.1079G>T	p.Arg360Leu	p.R360L	ENST00000317025	NM_023034.1	360	cGa/cTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465465	8465465	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs200841828		P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	36	435	0	ENST00000356435.5:c.3714+1G>A		p.X1238_splice	ENST00000356435		1238																																																																																
TEK	7010	MSKCC	GRCh37	9	27202816	27202816	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	40	317	0	ENST00000380036.4:c.1910-2A>T		p.X637_splice	ENST00000380036	NM_000459.3	637																																																																																
ABL1	25	MSKCC	GRCh37	9	133730343	133730343	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	124	568	0	ENST00000318560.5:c.409G>C	p.Ala137Pro	p.A137P	ENST00000318560	NM_005157.4	137	Gct/Cct																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932643	39932643	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	46	889	0	ENST00000378444.4:c.1956del	p.Tyr653ThrfsTer16	p.Y653Tfs*16	ENST00000378444	NM_001123385.1	652	ccC/cc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006897	47006897	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	44	772	0	ENST00000329236.7:c.17G>T	p.Arg6Leu	p.R6L	ENST00000329236	NM_001204466.1	6	cGt/cTt																																																																															
MED12	9968	MSKCC	GRCh37	X	70344910	70344910	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	96	793	0	ENST00000374080.3:c.2140C>A	p.Pro714Thr	p.P714T	ENST00000374080		714	Ccc/Acc																																																																															
MED12	9968	MSKCC	GRCh37	X	70357082	70357082	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	122	850	0	ENST00000374080.3:c.5597A>T	p.Gln1866Leu	p.Q1866L	ENST00000374080		1866	cAg/cTg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52438527	52438527	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	185	562	0	ENST00000460680.1:c.1192G>T	p.Glu398Ter	p.E398*	ENST00000460680	NM_004656.3	398	Gag/Tag																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372175	55372175	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	108	311	0	ENST00000297316.4:c.865C>A	p.Pro289Thr	p.P289T	ENST00000297316	NM_022454.3	289	Cca/Aca																																																																															
CDH1	999	MSKCC	GRCh37	16	68857353	68857353	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	49	595	1	ENST00000261769.5:c.1988A>G	p.Tyr663Cys	p.Y663C	ENST00000261769	NM_004360.3	663	tAc/tGc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221990	1221990	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	138	615	0	ENST00000326873.7:c.905A>C	p.Gln302Pro	p.Q302P	ENST00000326873	NM_000455.4	302	cAg/cCg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610222	10610222	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	210	871	0	ENST00000171111.5:c.488A>T	p.Gln163Leu	p.Q163L	ENST00000171111	NM_203500.1	163	cAg/cTg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528599	89528599	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	36	322	0	ENST00000336596.2:c.2899A>C	p.Ser967Arg	p.S967R	ENST00000336596	NM_005233.5	967	Agt/Cgt																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020818	26020818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	130	322	0	ENST00000357647.3:c.101G>A	p.Gly34Asp	p.G34D	ENST00000357647	NM_003529.2	34	gGc/gAc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162725009	162725009	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	183	375	0	ENST00000367921.3:c.481G>T	p.Ala161Ser	p.A161S	ENST00000367921	NM_006182.2	161	Gcc/Tcc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163298025	163298025	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	81	451	1	ENST00000271452.3:c.206T>A	p.Val69Glu	p.V69E	ENST00000271452	NM_145697.2	69	gTg/gAg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110028	115110028	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	358	596	1	ENST00000257566.3:c.1850C>A	p.Ala617Glu	p.A617E	ENST00000257566	NM_016569.3	617	gCg/gAg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562758	21562758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	261	343	0	ENST00000382592.4:c.1161G>T	p.Glu387Asp	p.E387D	ENST00000382592	NM_014572.2	387	gaG/gaT																																																																															
MGA	23269	MSKCC	GRCh37	15	42052623	42052623	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	231	431	0	ENST00000219905.7:c.7294G>T	p.Glu2432Ter	p.E2432*	ENST00000219905	NM_001164273.1	2432	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577541	7577562	+	frameshift_variant	Frame_Shift_Del	DEL	TTCATGCCGCCCATGCAGGAAC	TTCATGCCGCCCATGCAGGAAC	-			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	397	507	0	ENST00000269305.4:c.719_740del	p.Ser240ThrfsTer98	p.S240Tfs*98	ENST00000269305	NM_001126112.2	240	aGTTCCTGCATGGGCGGCATGAAc/ac																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984779	11984779	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	86	365	0	ENST00000353533.5:c.325G>T	p.Gly109Ter	p.G109*	ENST00000353533	NM_003010.3	109	Gga/Tga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132501	11132501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	346	577	0	ENST00000344626.4:c.2717G>T	p.Arg906Leu	p.R906L	ENST00000344626	NM_003072.3	906	cGc/cTc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919979	50919979	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	254	490	0	ENST00000440232.2:c.3066G>T	p.Gln1022His	p.Q1022H	ENST00000440232	NM_002691.3	1022	caG/caT																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99169353	99169353	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	254	395	0	ENST00000074304.5:c.1283A>G	p.Tyr428Cys	p.Y428C	ENST00000074304	NM_001134224.1	428	tAc/tGc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127565	55127565	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	82	295	0	ENST00000257290.5:c.353A>T	p.Tyr118Phe	p.Y118F	ENST00000257290	NM_006206.4	118	tAc/tTc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31435915	31435915	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	289	457	0	ENST00000344624.3:c.2999G>C	p.Arg1000Pro	p.R1000P	ENST00000344624		1000	cGg/cCg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592114	67592114	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	143	247	0	ENST00000274335.5:c.1930G>T	p.Gly644Cys	p.G644C	ENST00000274335		644	Ggc/Tgc																																																																															
BRAF	673	MSKCC	GRCh37	7	140476813	140476813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	232	458	0	ENST00000288602.6:c.1593G>T	p.Trp531Cys	p.W531C	ENST00000288602	NM_004333.4	531	tgG/tgT																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981906	70981906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	484	583	1	ENST00000276594.2:c.190C>T	p.Pro64Ser	p.P64S	ENST00000276594	NM_024504.3	64	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579397	7579397	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	290	768	1	ENST00000269305.4:c.290T>A	p.Val97Asp	p.V97D	ENST00000269305	NM_001126112.2	97	gTc/gAc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221946	1221946	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0028245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	316	684	0	ENST00000326873.7:c.863-2A>T		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52597902	52598110	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTATGAAGTCTTTCCTTTAATCTTTAAGTGAATAAATATTTTCTATTTGAAATATTTACTACTCTAGTTTAAGATCTAATAAAAAATTAAAAACACTGGACTACACTATGTTGCTATCAGTTAATGGAAGTGCTCTTTTTTCCTTAAGTTTTTCAAGCTTTACCTGAAGTAGTAAATTTCATCATCTACCACTTTAGCAGAGAGTGAA	ATTATGAAGTCTTTCCTTTAATCTTTAAGTGAATAAATATTTTCTATTTGAAATATTTACTACTCTAGTTTAAGATCTAATAAAAAATTAAAAACACTGGACTACACTATGTTGCTATCAGTTAATGGAAGTGCTCTTTTTTCCTTAAGTTTTTCAAGCTTTACCTGAAGTAGTAAATTTCATCATCTACCACTTTAGCAGAGAGTGAA	-			P-0028245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			14	132	74	0	ENST00000394830.3:c.3756_3800+164del		p.X1252_splice	ENST00000394830	NM_018313.4	1252																																																																																
RASA1	5921	MSKCC	GRCh37	5	86659320	86659320	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0028245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	54	199	0	ENST00000274376.6:c.1609A>G	p.Arg537Gly	p.R537G	ENST00000274376	NM_002890.2	537	Agg/Ggg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349851	89349888	+	frameshift_variant	Frame_Shift_Del	DEL	ACTGGATTTCTCTTTGTATCTTTCTGGTTTTGTCTTCT	ACTGGATTTCTCTTTGTATCTTTCTGGTTTTGTCTTCT	C			P-0028245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	188	730	1	ENST00000301030.4:c.3062_3099delinsG	p.Glu1021GlyfsTer285	p.E1021Gfs*285	ENST00000301030	NM_001256183.1	1021	gAGAAGACAAAACCAGAAAGATACAAAGAGAAATCCAGT/gG																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597407	10597413	+	protein_altering_variant	In_Frame_Del	DEL	GATGTCA	GATGTCA	T			P-0028245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	308	811	0	ENST00000171111.5:c.1790_1796delinsA	p.Met597_Ser599delinsLys	p.M597_S599delinsK	ENST00000171111	NM_203500.1	597	aTGACATCg/aAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0028247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	156	612	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0028247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	122	581	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604655	48604655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	42	303	0	ENST00000342988.3:c.1477G>A	p.Asp493Asn	p.D493N	ENST00000342988	NM_005359.5	493	Gat/Aat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991602	72991602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	59	610	0	ENST00000268489.5:c.2443G>A	p.Val815Met	p.V815M	ENST00000268489	NM_006885.3	815	Gtg/Atg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16041505	16041505	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	89	325	0	ENST00000268712.3:c.1374C>G	p.Asn458Lys	p.N458K	ENST00000268712	NM_006311.3	458	aaC/aaG																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495721	72495721	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	111	424	0	ENST00000477973.2:c.349C>G	p.Ser117Arg	p.S117R	ENST00000477973	NM_012234.5	117	agC/agG																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	31	345	0	ENST00000257430.4:c.4469del	p.His1490LeufsTer17	p.H1490Lfs*17	ENST00000257430	NM_000038.5	1490	cAt/ct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	37	515	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225591	26225591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	96	466	0	ENST00000360408.1:c.209G>A	p.Arg70His	p.R70H	ENST00000360408	NM_003532.2	70	cGc/cAc																																																																															
PPARG	5468	MSKCC	GRCh37	3	12475550	12475550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1479145908		P-0028249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	42	535	3	ENST00000287820.6:c.1424C>T	p.Thr475Met	p.T475M	ENST00000287820	NM_015869.4	475	aCg/aTg																																																																															
ATM	472	MSKCC	GRCh37	11	108202630	108202630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	40	404	0	ENST00000278616.4:c.7654C>T	p.His2552Tyr	p.H2552Y	ENST00000278616	NM_000051.3	2552	Cac/Tac																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001429	29001429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	41	311	0	ENST00000282397.4:c.1303G>A	p.Val435Met	p.V435M	ENST00000282397	NM_002019.4	435	Gtg/Atg																																																																															
RB1	5925	MSKCC	GRCh37	13	49027225	49027226	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0028249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	53	518	0	ENST00000267163.4:c.1794_1795dup	p.Asn599IlefsTer13	p.N599Ifs*13	ENST00000267163	NM_000321.2	598	aat/aATat																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43772110	43772110	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	61	690	0	ENST00000382044.4:c.605C>A	p.Ser202Ter	p.S202*	ENST00000382044	NM_001141980.1	202	tCa/tAa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534386	63534386	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1204	69	799	0	ENST00000307078.5:c.1135G>C	p.Glu379Gln	p.E379Q	ENST00000307078	NM_004655.3	379	Gaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579329	7579329	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0028256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	193	646	0	ENST00000269305.4:c.358A>T	p.Lys120Ter	p.K120*	ENST00000269305	NM_001126112.2	120	Aag/Tag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210689	2210691	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0028256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	60	773	0	ENST00000398665.3:c.1192_1194del	p.Lys398del	p.K398del	ENST00000398665	NM_032482.2	396	AAG/-																																																																															
TOP1	7150	MSKCC	GRCh37	20	39744996	39744996	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	115	554	2	ENST00000361337.2:c.1786A>T	p.Ile596Phe	p.I596F	ENST00000361337	NM_003286.2	596	Atc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0028257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	264	619	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0028257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	107	464	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108172408	108172409	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	213	403	0	ENST00000278616.4:c.5216dup	p.Asn1739LysfsTer10	p.N1739Kfs*10	ENST00000278616	NM_000051.3	1737	-/A																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273938	10273938	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	210	805	2	ENST00000330684.3:c.331C>T	p.Gln111Ter	p.Q111*	ENST00000330684	NM_001134407.1	111	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710670	114710670	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0028261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	120	475	0	ENST00000543371.1:c.155C>G	p.Ser52Ter	p.S52*	ENST00000543371	NM_001198531.1	52	tCa/tGa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118348882	118348882	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	173	235	0	ENST00000534358.1:c.3535T>G	p.Phe1179Val	p.F1179V	ENST00000534358	NM_005933.3	1179	Ttt/Gtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0028261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	399	791	2	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0028261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	123	350	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864377	162864377	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75860381		P-0028261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	91	428	0	ENST00000366898.1:c.136G>A	p.Ala46Thr	p.A46T	ENST00000366898	NM_004562.2	46	Gca/Aca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0027632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	220	631	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0027632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	190	736	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0027632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	166	644	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115850	8115850	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1268	186	827	0	ENST00000346208.3:c.1196A>T	p.His399Leu	p.H399L	ENST00000346208		399	cAc/cTc																																																																															
RET	5979	MSKCC	GRCh37	10	43614990	43614990	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	156	651	0	ENST00000355710.3:c.2404C>G	p.Leu802Val	p.L802V	ENST00000355710	NM_020975.4	802	Ctc/Gtc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729947	30729948	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	346	549	0	ENST00000359013.4:c.1543_1544insC	p.Asn515ThrfsTer26	p.N515Tfs*26	ENST00000359013	NM_001024847.2	515	aac/aCac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0027647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	74	387	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0027647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	99	395	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	190	551	1	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28897070	28897070	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	109	294	0	ENST00000282397.4:c.2810A>T	p.His937Leu	p.H937L	ENST00000282397	NM_002019.4	937	cAc/cTc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488754	212488754	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	63	372	0	ENST00000342788.4:c.2095A>C	p.Thr699Pro	p.T699P	ENST00000342788	NM_005235.2	699	Act/Cct																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502388	186502389	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	101	351	0	ENST00000323963.5:c.112dup	p.Met38AsnfsTer17	p.M38Nfs*17	ENST00000323963		37	-/A																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858054	152858054	+	synonymous_variant	Silent	SNP	C	C	T			P-0027647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	28	361	0	ENST00000406277.2:c.561G>A	p.Gln187=	p.Q187=	ENST00000406277	NM_152274.4	187	caG/caA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0027655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	98	430	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0027655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	182	335	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553591	106553591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	127	310	0	ENST00000369096.4:c.1556C>T	p.Ala519Val	p.A519V	ENST00000369096	NM_001198.3	519	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0027655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	246	415	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112137036	112137036	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	172	468	0	ENST00000257430.4:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000257430	NM_000038.5	264	Caa/Taa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907037	101907037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	175	288	0	ENST00000374994.4:c.997G>A	p.Asp333Asn	p.D333N	ENST00000374994	NM_004612.2	333	Gat/Aat																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926828	112926828	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0027655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	204	550	0	ENST00000351677.2:c.1448G>C	p.Gly483Ala	p.G483A	ENST00000351677	NM_002834.3	483	gGt/gCt																																																																															
BLM	641	MSKCC	GRCh37	15	91293198	91293198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	155	378	0	ENST00000355112.3:c.700G>A	p.Asp234Asn	p.D234N	ENST00000355112	NM_000057.2	234	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112116602	112116602	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0027655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	140	342	0	ENST00000257430.4:c.645+2T>G		p.X215_splice	ENST00000257430	NM_000038.5	215																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0027667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	138	574	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931588		P-0027667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	51	285	0	ENST00000349496.5:c.94G>A	p.Asp32Asn	p.D32N	ENST00000349496	NM_001904.3	32	Gac/Aac																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226252075	226252075	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	22	132	0	ENST00000366813.1:c.23C>G	p.Ala8Gly	p.A8G	ENST00000366813		8	gCc/gGc																																																																															
SETD8	387893	MSKCC	GRCh37	12	123874013	123874013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	33	49	0	ENST00000330479.4:c.44C>T	p.Ala15Val	p.A15V	ENST00000330479	NM_020382.3	15	gCg/gTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147545	47147709	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCACTCGAGCTTTAAACTCTTTATGATCGAGTACCTCTCCACAATATTCTAGGACAAAGGTGTTCCTGCAAACCAAAAGGAAAAAAATAGCACTTCCTACCTAGGAGCAGTAGGGAAAACATATATGCTCAGGCAAAAATAAGGAATTTAAATAAATACTGCAA	TTCACTCGAGCTTTAAACTCTTTATGATCGAGTACCTCTCCACAATATTCTAGGACAAAGGTGTTCCTGCAAACCAAAAGGAAAAAAATAGCACTTCCTACCTAGGAGCAGTAGGGAAAACATATATGCTCAGGCAAAAATAAGGAATTTAAATAAATACTGCAA	-			P-0027667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	44	434	0	ENST00000409792.3:c.4716-99_4781del		p.X1572_splice	ENST00000409792	NM_014159.6	1572																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242462	55242462	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	132	490	0	ENST00000275493.2:c.2232C>G	p.Ile744Met	p.I744M	ENST00000275493	NM_005228.3	744	atC/atG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0028107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	95	398	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877387	28877387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	65	461	0	ENST00000282397.4:c.3934G>A	p.Ala1312Thr	p.A1312T	ENST00000282397	NM_002019.4	1312	Gct/Act																																																																															
PAK1	5058	MSKCC	GRCh37	11	77051721	77051721	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	133	484	0	ENST00000356341.3:c.1086T>G	p.Asp362Glu	p.D362E	ENST00000356341	NM_002576.4	362	gaT/gaG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	77	432	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790183	40790183	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0028111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	94	290	1	ENST00000373198.4:c.2549-1G>T		p.X850_splice	ENST00000373198	NM_133170.3	850																																																																																
SETD2	29072	MSKCC	GRCh37	3	47165557	47165557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	141	468	0	ENST00000409792.3:c.569C>T	p.Pro190Leu	p.P190L	ENST00000409792	NM_014159.6	190	cCg/cTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508995	106508995	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	95	344	0	ENST00000359195.3:c.989C>A	p.Thr330Lys	p.T330K	ENST00000359195	NM_002649.2	330	aCg/aAg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370762	55370762	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	116	335	1	ENST00000297316.4:c.64G>T	p.Ala22Ser	p.A22S	ENST00000297316	NM_022454.3	22	Gcg/Tcg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900329	101900329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	49	326	0	ENST00000374994.4:c.763C>A	p.Arg255Ser	p.R255S	ENST00000374994	NM_004612.2	255	Cgt/Agt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291143	10291143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	101	610	0	ENST00000340748.4:c.328G>A	p.Gly110Arg	p.G110R	ENST00000340748		110	Ggg/Agg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465399	120465399	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0028113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	82	525	0	ENST00000256646.2:c.4862C>A	p.Ser1621Tyr	p.S1621Y	ENST00000256646	NM_024408.3	1621	tCt/tAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151871279	151871279	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	68	448	0	ENST00000262189.6:c.9311T>C	p.Leu3104Pro	p.L3104P	ENST00000262189	NM_170606.2	3104	cTt/cCt																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858000	152858001	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	13	203	0	ENST00000406277.2:c.614dup	p.Pro206AlafsTer7	p.P206Afs*7	ENST00000406277	NM_152274.4	205	gtg/gtTg																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0028139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	109	683	0	ENST00000397752.3:c.3028G>T	p.Asp1010Tyr	p.D1010Y	ENST00000397752	NM_000245.2	1010	Gat/Tat																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115268978	115268978	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	43	444	0	ENST00000438362.2:c.1632G>C	p.Arg544Ser	p.R544S	ENST00000438362	NM_001242891.1	544	agG/agC																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118380831	118380831	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0028139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	15	300	0	ENST00000534358.1:c.11069A>G	p.Glu3690Gly	p.E3690G	ENST00000534358	NM_005933.3	3690	gAa/gGa																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80343487	80343487	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	47	442	0	ENST00000286548.4:c.832C>G	p.Leu278Val	p.L278V	ENST00000286548	NM_002072.3	278	Ctt/Gtt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	158	647	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0028143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	158	467	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265574	152265574	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	232	521	0	ENST00000206249.3:c.1027A>T	p.Met343Leu	p.M343L	ENST00000206249	NM_000125.3	343	Atg/Ttg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410873	63410873	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	226	716	0	ENST00000330258.3:c.2294C>G	p.Ala765Gly	p.A765G	ENST00000330258	NM_152424.3	765	gCc/gGc																																																																															
CCND2	894	MSKCC	GRCh37	12	4409047	4409047	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	20	270	0	ENST00000261254.3:c.742G>T	p.Glu248Ter	p.E248*	ENST00000261254	NM_001759.3	248	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	59	400	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799378	88799378	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	19	258	0	ENST00000360948.2:c.7G>T	p.Val3Phe	p.V3F	ENST00000360948	NM_001012338.2	3	Gtc/Ttc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953124	81953124	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	10	249	0	ENST00000359376.3:c.2090G>C	p.Arg697Pro	p.R697P	ENST00000359376	NM_002661.3	697	cGg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0028145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	41	494	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881483	111881483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	42	426	0	ENST00000393256.3:c.161G>T	p.Ser54Ile	p.S54I	ENST00000393256	NM_006538.4	54	aGc/aTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541859	187541859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	15	409	0	ENST00000441802.2:c.5881G>T	p.Gly1961Cys	p.G1961C	ENST00000441802	NM_005245.3	1961	Ggc/Tgc																																																																															
NBN	4683	MSKCC	GRCh37	8	90994967	90994967	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	13	330	0	ENST00000265433.3:c.154T>A	p.Phe52Ile	p.F52I	ENST00000265433	NM_002485.4	52	Ttt/Att																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	272	529	0	ENST00000269305.4:c.733G>C	p.Gly245Arg	p.G245R	ENST00000269305	NM_001126112.2	245	Ggc/Cgc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72076752	72076752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	68	483	0	ENST00000357731.5:c.745G>T	p.Gly249Cys	p.G249C	ENST00000357731	NM_173808.2	249	Ggt/Tgt																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257152	19257152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	60	447	2	ENST00000162023.5:c.811C>A	p.Gln271Lys	p.Q271K	ENST00000162023		271	Cag/Aag																																																																															
MSH6	2956	MSKCC	GRCh37	2	48028218	48028218	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	102	435	0	ENST00000234420.5:c.3096C>A	p.Cys1032Ter	p.C1032*	ENST00000234420	NM_000179.2	1032	tgC/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0028158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	490	491	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134234	11134234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	240	487	0	ENST00000344626.4:c.2900G>A	p.Arg967His	p.R967H	ENST00000344626	NM_003072.3	967	cGt/cAt																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226253394	226253394	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	54	157	0	ENST00000366813.1:c.166C>T	p.Gln56Ter	p.Q56*	ENST00000366813		56	Cag/Tag																																																																															
DIS3	22894	MSKCC	GRCh37	13	73334756	73334756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	98	235	1	ENST00000377767.4:c.2704C>T	p.His902Tyr	p.H902Y	ENST00000377767	NM_014953.3	902	Cat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579348	7579349	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	323	592	0	ENST00000269305.4:c.338_339insA	p.Phe113LeufsTer36	p.F113Lfs*36	ENST00000269305	NM_001126112.2	113	ttc/ttAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448396	56448396	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0028158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	283	603	0	ENST00000407977.2:c.253-2A>G		p.X85_splice	ENST00000407977		85																																																																																
PAK7	57144	MSKCC	GRCh37	20	9561352	9561352	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	401	333	0	ENST00000353224.5:c.430G>T	p.Glu144Ter	p.E144*	ENST00000353224	NM_177990.2	144	Gaa/Taa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067239	37067239	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	103	335	0	ENST00000231790.2:c.1150G>T	p.Val384Phe	p.V384F	ENST00000231790	NM_000249.3	384	Gtt/Ttt																																																																															
TERT	7015	MSKCC	GRCh37	5	1294537	1294537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	416	428	0	ENST00000310581.5:c.464G>A	p.Arg155His	p.R155H	ENST00000310581	NM_198253.2	155	cGc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0028162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	305	554	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0028162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	182	525	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928906	49928906	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	90	808	0	ENST00000296474.3:c.3460G>C	p.Glu1154Gln	p.E1154Q	ENST00000296474	NM_002447.2	1154	Gag/Cag																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402665	20402665	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	37	368	0	ENST00000346618.3:c.202del	p.Thr68ProfsTer12	p.T68Pfs*12	ENST00000346618	NM_001949.4	68	Acc/cc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740766	145740766	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	122	682	0	ENST00000428558.2:c.1334G>C	p.Ser445Thr	p.S445T	ENST00000428558	NM_004260.3	445	aGc/aCc																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	170	288	0	ENST00000374080.3:c.3670C>G	p.Leu1224Val	p.L1224V	ENST00000374080		1224	Ctc/Gtc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165917	47165917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	32	352	0	ENST00000409792.3:c.209G>A	p.Arg70Gln	p.R70Q	ENST00000409792	NM_014159.6	70	cGa/cAa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492696	56492697	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0028163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	78	326	0	ENST00000407977.2:c.242_243del	p.Lys81IlefsTer14	p.K81Ifs*14	ENST00000407977		81	aAA/a																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980577	70980577	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	236	502	0	ENST00000276594.2:c.800G>C	p.Gly267Ala	p.G267A	ENST00000276594	NM_024504.3	267	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0028165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	236	600	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713333	30713333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	59	367	0	ENST00000359013.4:c.733C>A	p.Leu245Met	p.L245M	ENST00000359013	NM_001024847.2	245	Ctg/Atg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120231	94120231	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	98	216	0	ENST00000369303.4:c.820G>C	p.Asp274His	p.D274H	ENST00000369303	NM_004440.3	274	Gac/Cac																																																																															
JAK1	3716	MSKCC	GRCh37	1	65301837	65301838	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0028167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	59	281	1	ENST00000342505.4:c.3201_3202del	p.Phe1067LeufsTer6	p.F1067Lfs*6	ENST00000342505	NM_002227.2	1067	ttTGga/ttga																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870903	12871117	+	frameshift_variant	Frame_Shift_Del	DEL	GACTTGGAGAAGCACTGCAGAGACATGGAAGAGGCGAGCCAGCGCAAGTGGAATTTCGATTTTCAGAATCACAAACCCCTAGAGGGCAAGTACGAGTGGCAAGAGGTGGAGAAGGGCAGCTTGCCCGAGTTCTACTACAGACCCCCGCGGCCCCCCAAAGGTGCCTGCAAGGTGCCGGCGCAGGAGAGCCAGGATGTCAGCGGGAGCCGCCCGGC	GACTTGGAGAAGCACTGCAGAGACATGGAAGAGGCGAGCCAGCGCAAGTGGAATTTCGATTTTCAGAATCACAAACCCCTAGAGGGCAAGTACGAGTGGCAAGAGGTGGAGAAGGGCAGCTTGCCCGAGTTCTACTACAGACCCCCGCGGCCCCCCAAAGGTGCCTGCAAGGTGCCGGCGCAGGAGAGCCAGGATGTCAGCGGGAGCCGCCCGGC	-			P-0028167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	68	239	0	ENST00000228872.4:c.131_345del	p.Asp44GlyfsTer9	p.D44Gfs*9	ENST00000228872	NM_004064.3	44	GACTTGGAGAAGCACTGCAGAGACATGGAAGAGGCGAGCCAGCGCAAGTGGAATTTCGATTTTCAGAATCACAAACCCCTAGAGGGCAAGTACGAGTGGCAAGAGGTGGAGAAGGGCAGCTTGCCCGAGTTCTACTACAGACCCCCGCGGCCCCCCAAAGGTGCCTGCAAGGTGCCGGCGCAGGAGAGCCAGGATGTCAGCGGGAGCCGCCCGGCg/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7577561	7577561	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	95	432	0	ENST00000269305.4:c.720T>A	p.Ser240Arg	p.S240R	ENST00000269305	NM_001126112.2	240	agT/agA																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592115	67592116	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CACTTTTCTTGTCCGGGAGAGCAGTAAACAGGGCTGCTATGCCTGCTCTGTAGTGTGA			P-0028167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	46	245	0	ENST00000274335.5:c.1985+2_1985+3insGACACTTTTCTTGTCCGGGAGAGCAGTAAACAGGGCTGCTATGCCTGCTCTGTAGTGT		p.G644GTFLVRESSKQGCYACSVV*X	ENST00000274335		644	ggc/ggCACTTTTCTTGTCCGGGAGAGCAGTAAACAGGGCTGCTATGCCTGCTCTGTAGTGTGAc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	135	338	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																															
ARID2	196528	MSKCC	GRCh37	12	46298716	46298716	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0028173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	92	238	0	ENST00000334344.6:c.5364-1G>T		p.X1788_splice	ENST00000334344	NM_152641.2	1788																																																																																
STK11	6794	MSKCC	GRCh37	19	1220641	1220642	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0028173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	232	596	0	ENST00000326873.7:c.659_660del	p.Gln220ProfsTer45	p.Q220Pfs*45	ENST00000326873	NM_000455.4	220	cAG/c																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602815	10602824	+	frameshift_variant	Frame_Shift_Del	DEL	ACTTGACCCA	ACTTGACCCA	-			P-0028173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	249	622	0	ENST00000171111.5:c.754_763del	p.Trp252ThrfsTer22	p.W252Tfs*22	ENST00000171111	NM_203500.1	252	TGGGTCAAGTac/ac																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714594	52714594	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	322	464	0	ENST00000322088.6:c.352G>T	p.Glu118Ter	p.E118*	ENST00000322088	NM_014225.5	118	Gag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0028175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	91	487	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446160	49446160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	89	549	0	ENST00000301067.7:c.1306G>A	p.Glu436Lys	p.E436K	ENST00000301067	NM_003482.3	436	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578416	7578419	+	frameshift_variant	Frame_Shift_Del	DEL	CCTC	CCTC	-			P-0028175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	60	546	0	ENST00000269305.4:c.511_514delGAGG	p.Glu171LeufsTer2	p.E171Lfs*2	ENST00000269305	NM_001126112.2	171	GAGGtt/tt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0028177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	93	453	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0028177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	46	619	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			314	69	341	0	ENST00000397062.3:c.101G>C	p.Arg34Pro	p.R34P	ENST00000397062	NM_006164.4	34	cGa/cCa																																																																															
MED12	9968	MSKCC	GRCh37	X	70344869	70344869	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	95	362	0	ENST00000374080.3:c.2099C>T	p.Ser700Phe	p.S700F	ENST00000374080		700	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	95	623	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
MED12	9968	MSKCC	GRCh37	X	70344973	70344973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			179	92	369	0	ENST00000374080.3:c.2203G>A	p.Ala735Thr	p.A735T	ENST00000374080		735	Gcc/Acc																																																																															
NF1	4763	MSKCC	GRCh37	17	29490319	29490319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	27	506	0	ENST00000358273.4:c.404G>T	p.Arg135Leu	p.R135L	ENST00000358273	NM_001042492.2	135	cGg/cTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42792100	42792100	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			281	67	601	0	ENST00000575354.2:c.904G>T	p.Glu302Ter	p.E302*	ENST00000575354	NM_015125.3	302	Gag/Tag																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165725	118165725	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			263	52	416	0	ENST00000369448.3:c.235G>T	p.Val79Phe	p.V79F	ENST00000369448	NM_017709.3	79	Gtt/Ttt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731044	162731044	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			420	80	546	0	ENST00000367921.3:c.899A>T	p.Lys300Met	p.K300M	ENST00000367921	NM_006182.2	300	aAg/aTg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94212844	94212844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			322	52	508	0	ENST00000323929.3:c.398C>T	p.Thr133Ile	p.T133I	ENST00000323929	NM_005591.3	133	aCa/aTa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	475121	475121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	37	618	2	ENST00000399788.2:c.516C>A	p.Phe172Leu	p.F172L	ENST00000399788	NM_001042603.1	172	ttC/ttA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49439883	49439883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			405	91	743	0	ENST00000301067.7:c.4658G>A	p.Cys1553Tyr	p.C1553Y	ENST00000301067	NM_003482.3	1553	tGt/tAt																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783959	50783959	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			534	96	747	0	ENST00000398568.2:c.350A>G	p.Asn117Ser	p.N117S	ENST00000398568	NM_001042412.1	117	aAc/aGc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89345511	89345511	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			230	51	424	0	ENST00000301030.4:c.7439G>C	p.Gly2480Ala	p.G2480A	ENST00000301030	NM_001256183.1	2480	gGc/gCc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057685	180057685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	130	781	0	ENST00000261937.6:c.270G>T	p.Arg90Ser	p.R90S	ENST00000261937	NM_182925.4	90	agG/agT																																																																															
SESN1	27244	MSKCC	GRCh37	6	109319831	109319831	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			434	45	591	0	ENST00000436639.2:c.857G>C	p.Cys286Ser	p.C286S	ENST00000436639	NM_014454.2	286	tGt/tCt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981846	70981846	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			416	47	795	1	ENST00000276594.2:c.250C>A	p.Leu84Ile	p.L84I	ENST00000276594	NM_024504.3	84	Cta/Ata																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139408961	139408961	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	27	623	0	ENST00000277541.6:c.2207+1G>T		p.X736_splice	ENST00000277541	NM_017617.3	736																																																																																
AMER1	139285	MSKCC	GRCh37	X	63410807	63410807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	185	520	0	ENST00000330258.3:c.2360C>A	p.Ser787Tyr	p.S787Y	ENST00000330258	NM_152424.3	787	tCc/tAc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765123636		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	158	318	0	ENST00000369902.3:c.71dup	p.Ala25GlyfsTer23	p.A25Gfs*23	ENST00000369902	NM_016169.3	22	gcc/gCcc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	252	435	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36651955	36651955	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	140	499	0	ENST00000244741.5:c.77A>G	p.Asp26Gly	p.D26G	ENST00000244741	NM_000389.4	26	gAc/gGc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177584	56177584	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368201444		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	62	357	0	ENST00000399503.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000399503	NM_005921.1	853	Cgt/Tgt																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	56	271	0	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	195	442	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	114	287	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	140	289	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																															
AXL	558	MSKCC	GRCh37	19	41743932	41743933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778012871		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	359	789	2	ENST00000301178.4:c.874dup	p.His292ProfsTer47	p.H292Pfs*47	ENST00000301178	NM_021913.4	289	-/C																																																																															
RARA	5914	MSKCC	GRCh37	17	38512383	38512383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	156	477	1	ENST00000254066.5:c.1294C>T	p.Arg432Trp	p.R432W	ENST00000254066	NM_000964.3	432	Cgg/Tgg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481671	56481671	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	300	642	0	ENST00000267101.3:c.706T>C	p.Ser236Pro	p.S236P	ENST00000267101	NM_001982.3	236	Tca/Cca																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	228	438	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
POLE	5426	MSKCC	GRCh37	12	133242014	133242014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	228	564	4	ENST00000320574.5:c.2342C>T	p.Ala781Val	p.A781V	ENST00000320574	NM_006231.2	781	gCg/gTg																																																																															
AR	367	MSKCC	GRCh37	X	66765242	66765243	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	130	176	0	ENST00000374690.3:c.271_273dup	p.Gln91dup	p.Q91dup	ENST00000374690	NM_000044.3	91	agg/agGCAg																																																																															
FH	2271	MSKCC	GRCh37	1	241680489	241680489	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200007371		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	152	333	3	ENST00000366560.3:c.260G>A	p.Arg87His	p.R87H	ENST00000366560	NM_000143.3	87	cGc/cAc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729163	66729163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	19	639	0	ENST00000307102.5:c.371C>T	p.Pro124Leu	p.P124L	ENST00000307102	NM_002755.3	124	cCg/cTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630905	187630905	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75367100		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	214	429	2	ENST00000441802.2:c.77G>A	p.Arg26Gln	p.R26Q	ENST00000441802	NM_005245.3	26	cGa/cAa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	122	507	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																															
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	70	713	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68352609	68352609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	133	390	0	ENST00000487270.1:c.476G>A	p.Arg159His	p.R159H	ENST00000487270	NM_133509.3	159	cGt/cAt																																																																															
ALK	238	MSKCC	GRCh37	2	29456453	29456453	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	172	651	0	ENST00000389048.3:c.2465del	p.Gly822ValfsTer9	p.G822Vfs*9	ENST00000389048	NM_004304.4	822	gGt/gt																																																																															
TET2	54790	MSKCC	GRCh37	4	106197505	106197506	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	147	332	0	ENST00000380013.4:c.5844dup	p.Val1949SerfsTer7	p.V1949Sfs*7	ENST00000380013	NM_001127208.2	1946	-/A																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934126	39934127	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	239	270	1	ENST00000378444.4:c.472dup	p.Ser158LysfsTer28	p.S158Kfs*28	ENST00000378444	NM_001123385.1	158	agt/aAgt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	55	624	3	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417868	138417868	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	278	513	0	ENST00000289153.2:c.1651T>C	p.Cys551Arg	p.C551R	ENST00000289153	NM_006219.2	551	Tgt/Cgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	250	462	0	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	193	329	2	ENST00000265335.6:c.2801delA	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78923339	78923339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	208	451	0	ENST00000306801.3:c.3362C>T	p.Thr1121Met	p.T1121M	ENST00000306801	NM_020761.2	1121	aCg/aTg																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882050	36882050	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	336	754	6	ENST00000358127.4:c.963del	p.Ala322LeufsTer11	p.A322Lfs*11	ENST00000358127	NM_001280556.1	321	ccC/cc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	267	413	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023267	27023267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	195	274	0	ENST00000324856.7:c.373G>A	p.Gly125Ser	p.G125S	ENST00000324856	NM_006015.4	125	Ggt/Agt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918759	50918759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	351	654	1	ENST00000440232.2:c.2629G>A	p.Asp877Asn	p.D877N	ENST00000440232	NM_002691.3	877	Gat/Aat																																																																															
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	157	234	0	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																																																															
HRAS	3265	MSKCC	GRCh37	11	533535	533535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	121	640	2	ENST00000311189.7:c.368G>A	p.Arg123His	p.R123H	ENST00000311189		123	cGc/cAc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73352417	73352418	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	137	457	0	ENST00000377767.4:c.487dup	p.Met163AsnfsTer15	p.M163Nfs*15	ENST00000377767	NM_014953.3	163	atg/aAtg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905055	50905055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	194	509	2	ENST00000440232.2:c.342delG	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	113	Ggg/gg																																																																															
PARP1	142	MSKCC	GRCh37	1	226567647	226567647	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	157	439	1	ENST00000366794.5:c.1519delA	p.Ser507AlafsTer17	p.S507Afs*17	ENST00000366794	NM_001618.3	507	Agc/gc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272336	15272337	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs771517374		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	268	779	4	ENST00000263388.2:c.6102dup	p.Gly2035ArgfsTer60	p.G2035Rfs*60	ENST00000263388	NM_000435.2	2034	-/C																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508535	106508535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	73	211	0	ENST00000359195.3:c.529C>T	p.Arg177Cys	p.R177C	ENST00000359195	NM_002649.2	177	Cgc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542110	187542110	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	179	374	0	ENST00000441802.2:c.5630del	p.Pro1877LeufsTer20	p.P1877Lfs*20	ENST00000441802	NM_005245.3	1877	cCt/ct																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154241	2154242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	36	584	2	ENST00000434045.2:c.686dup	p.Glu230ArgfsTer50	p.E230Rfs*50	ENST00000434045	NM_001127598.1	229	cca/ccCa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38287386	38287386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	245	491	0	ENST00000425967.3:c.271C>T	p.Arg91Trp	p.R91W	ENST00000425967	NM_001174067.1	91	Cgg/Tgg																																																																															
BCL10	8915	MSKCC	GRCh37	1	85736510	85736511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs387906351		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	228	313	2	ENST00000370580.1:c.136dup	p.Ile46AsnfsTer4	p.I46Nfs*4	ENST00000370580	NM_003921.4	46	ata/aAta																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499363	89499363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	109	357	3	ENST00000336596.2:c.2538delC	p.Met847TrpfsTer10	p.M847Wfs*10	ENST00000336596	NM_005233.5	845	Ccc/cc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28644740	28644741	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	129	275	0	ENST00000241453.7:c.52dup	p.Ser18PhefsTer24	p.S18Ffs*24	ENST00000241453	NM_004119.2	18	tct/tTct																																																																															
ALK	238	MSKCC	GRCh37	2	29443612	29443612	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	301	674	3	ENST00000389048.3:c.3605delG	p.Gly1202GlufsTer56	p.G1202Efs*56	ENST00000389048	NM_004304.4	1202	gGa/ga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101117	27101117	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	320	622	0	ENST00000324856.7:c.4403del	p.Pro1468LeufsTer13	p.P1468Lfs*13	ENST00000324856	NM_006015.4	1467	Ccc/cc																																																																															
PIM1	5292	MSKCC	GRCh37	6	37138563	37138563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	224	551	1	ENST00000373509.5:c.97C>T	p.Pro33Ser	p.P33S	ENST00000373509	NM_002648.3	33	Ccc/Tcc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728564	190728565	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	295	630	0	ENST00000441310.2:c.1958dup	p.Ile654AspfsTer21	p.I654Dfs*21	ENST00000441310	NM_000534.4	651	aga/agAa																																																																															
POLE	5426	MSKCC	GRCh37	12	133237640	133237640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	53	581	0	ENST00000320574.5:c.2975C>T	p.Ala992Val	p.A992V	ENST00000320574	NM_006231.2	992	gCc/gTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259729	16259729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	235	559	0	ENST00000375759.3:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000375759	NM_015001.2	2332	Cgc/Tgc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121535	2121535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	82	658	1	ENST00000219476.3:c.1864C>T	p.Arg622Trp	p.R622W	ENST00000219476	NM_000548.3	622	Cgg/Tgg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351871	89351871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	76	760	1	ENST00000301030.4:c.1079C>T	p.Pro360Leu	p.P360L	ENST00000301030	NM_001256183.1	360	cCg/cTg																																																																															
AXL	558	MSKCC	GRCh37	19	41758303	41758303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	274	601	1	ENST00000301178.4:c.1759G>A	p.Val587Ile	p.V587I	ENST00000301178	NM_021913.4	587	Gtc/Atc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65344748	65344748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	167	364	1	ENST00000342505.4:c.289G>A	p.Val97Ile	p.V97I	ENST00000342505	NM_002227.2	97	Gtt/Att																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625348	69625348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	228	616	1	ENST00000334134.2:c.445G>A	p.Ala149Thr	p.A149T	ENST00000334134	NM_005247.2	149	Gcc/Acc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89457251	89457252	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	45	427	0	ENST00000336596.2:c.1738dup	p.Arg580LysfsTer19	p.R580Kfs*19	ENST00000336596	NM_005233.5	578	gaa/gAaa																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856400	111856400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	27	260	0	ENST00000341259.2:c.451G>A	p.Ala151Thr	p.A151T	ENST00000341259	NM_005475.2	151	Gcc/Acc																																																																															
YES1	7525	MSKCC	GRCh37	18	745962	745963	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	59	526	0	ENST00000314574.4:c.559_560delAG	p.Ser187Ter	p.S187*	ENST00000314574	NM_005433.3	187	AGt/t																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	220	575	5	ENST00000337652.1:c.1561dupC	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																															
SYK	6850	MSKCC	GRCh37	9	93629423	93629423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	32	320	0	ENST00000375746.1:c.857C>T	p.Ala286Val	p.A286V	ENST00000375746	NM_001174167.1	286	gCg/gTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53224141	53224141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	200	388	0	ENST00000375401.3:c.3410C>T	p.Ala1137Val	p.A1137V	ENST00000375401	NM_004187.3	1137	gCg/gTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332152	70332153	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	82	248	3	ENST00000373644.4:c.65dup	p.Lys23GlufsTer37	p.K23Efs*37	ENST00000373644	NM_030625.2	19	-/A																																																																															
APC	324	MSKCC	GRCh37	5	112116536	112116536	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200740020		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	42	456	0	ENST00000257430.4:c.581G>A	p.Arg194Lys	p.R194K	ENST00000257430	NM_000038.5	194	aGg/aAg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138461563	138461563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	190	455	0	ENST00000289153.2:c.458G>A	p.Arg153His	p.R153H	ENST00000289153	NM_006219.2	153	cGc/cAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29580009	29580010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	35	407	0	ENST00000358273.4:c.4170dup	p.Ser1391IlefsTer4	p.S1391Ifs*4	ENST00000358273	NM_001042492.2	1388	-/A																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288785	33288785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	161	323	0	ENST00000374542.5:c.767G>A	p.Arg256His	p.R256H	ENST00000374542	NM_001141970.1	256	cGc/cAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	411	848	2	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	308	634	14	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458436	120458436	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	118	459	0	ENST00000256646.2:c.6909delC	p.Ile2304LeufsTer2	p.I2304Lfs*2	ENST00000256646	NM_024408.3	2303	ccC/cc																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	333	687	2	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740438	58740439	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	216	499	0	ENST00000305921.3:c.1349dupT	p.Leu450PhefsTer6	p.L450Ffs*6	ENST00000305921	NM_003620.3	448	aat/aaTt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982134	93982134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	108	291	0	ENST00000369303.4:c.1331C>T	p.Ser444Leu	p.S444L	ENST00000369303	NM_004440.3	444	tCg/tTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485311	8485311	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	238	415	0	ENST00000356435.5:c.3069T>A	p.Asn1023Lys	p.N1023K	ENST00000356435		1023	aaT/aaA																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966665	36966665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	219	440	1	ENST00000358127.4:c.661C>T	p.Arg221Trp	p.R221W	ENST00000358127	NM_001280556.1	221	Cgg/Tgg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485766	57485766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	154	322	0	ENST00000371085.3:c.1067G>A	p.Arg356His	p.R356H	ENST00000371085	NM_000516.4	356	cGt/cAt																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84384048	84384048	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	253	477	1	ENST00000321945.7:c.804G>T	p.Lys268Asn	p.K268N	ENST00000321945	NM_139076.2	268	aaG/aaT																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976922	18976922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	270	548	0	ENST00000262803.5:c.3307G>A	p.Gly1103Arg	p.G1103R	ENST00000262803	NM_002911.3	1103	Gga/Aga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120480570	120480571	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	44	449	0	ENST00000256646.2:c.3246dupA	p.Ala1083SerfsTer17	p.A1083Sfs*17	ENST00000256646	NM_024408.3	1082	-/A																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31388675	31388675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	195	544	0	ENST00000328111.2:c.1940G>A	p.Gly647Asp	p.G647D	ENST00000328111	NM_006892.3	647	gGc/gAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400029	139400029	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	64	648	0	ENST00000277541.6:c.4319T>C	p.Ile1440Thr	p.I1440T	ENST00000277541	NM_017617.3	1440	aTc/aCc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350059	89350059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	237	563	0	ENST00000301030.4:c.2891G>A	p.Gly964Asp	p.G964D	ENST00000301030	NM_001256183.1	964	gGc/gAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212055	5212055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	185	555	0	ENST00000357368.4:c.4976G>A	p.Arg1659His	p.R1659H	ENST00000357368	NM_002850.3	1659	cGc/cAc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912173	29912173	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	98	193	0	ENST00000376809.5:c.894G>A	p.Trp298Ter	p.W298*	ENST00000376809	NM_002116.7	298	tgG/tgA																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103506141	103506141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	46	383	0	ENST00000355739.4:c.299G>A	p.Ser100Asn	p.S100N	ENST00000355739	NM_000123.3	100	aGt/aAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	113	410	0	ENST00000324856.7:c.5547_5548dupGG	p.Asp1850GlyfsTer34	p.D1850Gfs*34	ENST00000324856	NM_006015.4	1847	-/GG																																																																															
FANCC	2176	MSKCC	GRCh37	9	97888841	97888841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	51	578	1	ENST00000289081.3:c.866C>T	p.Ala289Val	p.A289V	ENST00000289081	NM_000136.2	289	gCc/gTc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11924223	11924225	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	12	27	0	ENST00000353533.5:c.31_33del	p.Gly11del	p.G11del	ENST00000353533	NM_003010.3	7	aGCGgc/agc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339110	65339111	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	247	449	1	ENST00000342505.4:c.425dupA	p.Ile143AspfsTer9	p.I143Dfs*9	ENST00000342505	NM_002227.2	142	aag/aaAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211898	36211899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775294431		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1135	233	819	0	ENST00000222270.7:c.1656dup	p.Lys553GlnfsTer46	p.K553Qfs*46	ENST00000222270	NM_014727.1	550	gac/gaCc																																																																															
ATRX	546	MSKCC	GRCh37	X	76938655	76938655	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	180	280	0	ENST00000373344.5:c.2093A>G	p.Lys698Arg	p.K698R	ENST00000373344	NM_000489.3	698	aAg/aGg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26967567	26967567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	229	516	0	ENST00000381527.3:c.710G>A	p.Arg237Gln	p.R237Q	ENST00000381527	NM_001260.1	237	cGa/cAa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384997	31384997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	51	428	0	ENST00000328111.2:c.1382G>A	p.Arg461His	p.R461H	ENST00000328111	NM_006892.3	461	cGc/cAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048667	180048667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	260	571	1	ENST00000261937.6:c.1895G>A	p.Arg632His	p.R632H	ENST00000261937	NM_182925.4	632	cGc/cAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413945	139413945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	337	710	0	ENST00000277541.6:c.815G>A	p.Cys272Tyr	p.C272Y	ENST00000277541	NM_017617.3	272	tGt/tAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42054402	42054403	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	151	363	0	ENST00000219905.7:c.7592dupA	p.Lys2532GlufsTer6	p.K2532Efs*6	ENST00000219905	NM_001164273.1	2529	aga/agAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874012	151874013	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	206	429	0	ENST00000262189.6:c.8525dup	p.Asn2842LysfsTer2	p.N2842Kfs*2	ENST00000262189	NM_170606.2	2842	aat/aaAt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118754	115118754	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	108	497	0	ENST00000257566.3:c.587A>G	p.Gln196Arg	p.Q196R	ENST00000257566	NM_016569.3	196	cAg/cGg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300039	137300040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755912201		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	212	696	4	ENST00000481739.1:c.331dup	p.Leu111ProfsTer70	p.L111Pfs*70	ENST00000481739	NM_002957.4	108	-/C																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937983	36937983	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	216	719	0	ENST00000361632.4:c.853del	p.Leu285SerfsTer43	p.L285Sfs*43	ENST00000361632		285	Ctc/tc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591092	67591092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	64	336	0	ENST00000274335.5:c.1685G>A	p.Arg562His	p.R562H	ENST00000274335		562	cGt/cAt																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521524	46521525	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	69	532	1	ENST00000262741.5:c.883dupA	p.Met295AsnfsTer3	p.M295Nfs*3	ENST00000262741	NM_003629.3	295	atg/aAtg																																																																															
SUFU	51684	MSKCC	GRCh37	10	104356980	104356981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1477199832		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	260	530	0	ENST00000369902.3:c.846dup	p.Glu283ArgfsTer3	p.E283Rfs*3	ENST00000369902	NM_016169.3	280	-/C																																																																															
SMO	6608	MSKCC	GRCh37	7	128845102	128845102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	336	603	0	ENST00000249373.3:c.596G>A	p.Arg199Gln	p.R199Q	ENST00000249373	NM_005631.4	199	cGg/cAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500885	8500885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	17	491	0	ENST00000356435.5:c.1997C>A	p.Pro666His	p.P666H	ENST00000356435		666	cCt/cAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929161	32929162	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	267	555	0	ENST00000380152.3:c.7177dup	p.Met2393AsnfsTer19	p.M2393Nfs*19	ENST00000380152		2391	gaa/gAaa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191536	185191536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	54	500	0	ENST00000265026.3:c.2417G>T	p.Arg806Met	p.R806M	ENST00000265026	NM_004721.4	806	aGg/aTg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206647680	206647680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	177	410	0	ENST00000367120.3:c.94G>A	p.Gly32Arg	p.G32R	ENST00000367120	NM_014002.3	32	Gga/Aga																																																																															
SETD8	387893	MSKCC	GRCh37	12	123879807	123879807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	167	542	0	ENST00000330479.4:c.503G>A	p.Arg168Gln	p.R168Q	ENST00000330479	NM_020382.3	168	cGa/cAa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357465	89357465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	158	575	0	ENST00000301030.4:c.353C>T	p.Ala118Val	p.A118V	ENST00000301030	NM_001256183.1	118	gCc/gTc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2100464	2100464	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767626323		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	75	557	1	ENST00000219476.3:c.202G>A	p.Ala68Thr	p.A68T	ENST00000219476	NM_000548.3	68	Gca/Aca																																																																															
CARD11	84433	MSKCC	GRCh37	7	2963984	2963984	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778150		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	269	606	1	ENST00000396946.4:c.1823G>A	p.Arg608His	p.R608H	ENST00000396946	NM_032415.4	608	cGc/cAc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450243	50450243	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757521297		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	170	422	2	ENST00000331340.3:c.427C>T	p.Arg143Trp	p.R143W	ENST00000331340	NM_006060.4	143	Cgg/Tgg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52584777	52584777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	188	494	0	ENST00000394830.3:c.4345C>T	p.Pro1449Ser	p.P1449S	ENST00000394830	NM_018313.4	1449	Cca/Tca																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467760	99467760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs150221450		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	146	303	0	ENST00000268035.6:c.2629C>T	p.Arg877Ter	p.R877*	ENST00000268035	NM_000875.3	877	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187201	11187201	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	209	427	0	ENST00000361445.4:c.6217G>T	p.Ala2073Ser	p.A2073S	ENST00000361445	NM_004958.3	2073	Gcc/Tcc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11272941	11272942	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	182	429	0	ENST00000361445.4:c.3309dup	p.Gly1104TrpfsTer6	p.G1104Wfs*6	ENST00000361445	NM_004958.3	1103	-/T																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254750	16254750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	276	570	3	ENST00000375759.3:c.2015G>A	p.Arg672Gln	p.R672Q	ENST00000375759	NM_015001.2	672	cGa/cAa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257845	16257845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	40	420	0	ENST00000375759.3:c.5110C>A	p.Pro1704Thr	p.P1704T	ENST00000375759	NM_015001.2	1704	Cca/Aca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258844	16258844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	76	598	0	ENST00000375759.3:c.6109G>A	p.Ala2037Thr	p.A2037T	ENST00000375759	NM_015001.2	2037	Gca/Aca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260969	16260969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	105	324	1	ENST00000375759.3:c.8234C>T	p.Ala2745Val	p.A2745V	ENST00000375759	NM_015001.2	2745	gCg/gTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16263779	16263779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	136	487	1	ENST00000375759.3:c.10148G>A	p.Ser3383Asn	p.S3383N	ENST00000375759	NM_015001.2	3383	aGc/aAc																																																																															
SDHB	6390	MSKCC	GRCh37	1	17355199	17355199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	64	450	0	ENST00000375499.3:c.319G>A	p.Gly107Arg	p.G107R	ENST00000375499	NM_003000.2	107	Gga/Aga																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36941120	36941121	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	196	553	0	ENST00000361632.4:c.218dup	p.Arg74GlnfsTer7	p.R74Qfs*7	ENST00000361632		73	ggc/ggGc																																																																															
MPL	4352	MSKCC	GRCh37	1	43805751	43805751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	206	709	0	ENST00000372470.3:c.807G>T	p.Trp269Cys	p.W269C	ENST00000372470	NM_005373.2	269	tgG/tgT																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798290	45798290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	40	525	0	ENST00000372115.3:c.604G>A	p.Gly202Arg	p.G202R	ENST00000372115	NM_001048171.1	202	Ggg/Agg																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46543263	46543263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	112	516	0	ENST00000262741.5:c.238C>T	p.Arg80Trp	p.R80W	ENST00000262741	NM_003629.3	80	Cgg/Tgg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739824	46739824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	37	445	0	ENST00000371975.4:c.1625G>A	p.Arg542His	p.R542H	ENST00000371975	NM_003579.3	542	cGc/cAc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46740333	46740333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	152	541	0	ENST00000371975.4:c.1813G>A	p.Ala605Thr	p.A605T	ENST00000371975	NM_003579.3	605	Gcc/Acc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115251190	115251190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	211	516	0	ENST00000369535.4:c.536A>G	p.Gln179Arg	p.Q179R	ENST00000369535	NM_002524.4	179	cAg/cGg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120512257	120512257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	230	484	0	ENST00000256646.2:c.985G>T	p.Gly329Cys	p.G329C	ENST00000256646	NM_024408.3	329	Ggc/Tgc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155880299	155880299	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	232	400	0	ENST00000368323.3:c.107-2A>G		p.X36_splice	ENST00000368323	NM_006912.5	36																																																																																
NTRK1	4914	MSKCC	GRCh37	1	156834187	156834187	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs79678945		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	385	862	1	ENST00000524377.1:c.254G>A	p.Arg85His	p.R85H	ENST00000524377	NM_002529.3	85	cGt/cAt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156841478	156841478	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	281	601	0	ENST00000524377.1:c.781A>G	p.Lys261Glu	p.K261E	ENST00000524377	NM_002529.3	261	Aag/Gag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162722920	162722920	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	165	540	0	ENST00000367921.3:c.118C>A	p.Gln40Lys	p.Q40K	ENST00000367921	NM_006182.2	40	Cag/Aag																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175996819	175996819	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	193	418	0	ENST00000367669.3:c.1618C>G	p.Leu540Val	p.L540V	ENST00000367669	NM_022457.5	540	Ctg/Gtg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176104165	176104165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	103	371	0	ENST00000367669.3:c.949G>A	p.Ala317Thr	p.A317T	ENST00000367669	NM_022457.5	317	Gct/Act																																																																															
CDC73	79577	MSKCC	GRCh37	1	193121546	193121546	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	164	314	0	ENST00000367435.3:c.944A>G	p.Tyr315Cys	p.Y315C	ENST00000367435	NM_024529.4	315	tAc/tGc																																																																															
PARP1	142	MSKCC	GRCh37	1	226551701	226551701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	86	539	0	ENST00000366794.5:c.2729C>T	p.Thr910Met	p.T910M	ENST00000366794	NM_001618.3	910	aCg/aTg																																																																															
FH	2271	MSKCC	GRCh37	1	241680604	241680604	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	173	365	0	ENST00000366560.3:c.145T>C	p.Ser49Pro	p.S49P	ENST00000366560	NM_000143.3	49	Tcc/Ccc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246091304	246091305	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	68	492	0	ENST00000388985.4:c.630dup	p.Asn211GlnfsTer37	p.N211Qfs*37	ENST00000388985		210	-/C																																																																															
RET	5979	MSKCC	GRCh37	10	43609955	43609955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	296	713	1	ENST00000355710.3:c.1907C>T	p.Thr636Met	p.T636M	ENST00000355710	NM_020975.4	636	aCg/aTg																																																																															
RET	5979	MSKCC	GRCh37	10	43615613	43615613	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	199	460	0	ENST00000355710.3:c.2692G>T	p.Asp898Tyr	p.D898Y	ENST00000355710	NM_020975.4	898	Gat/Tat																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900968	114900968	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	294	456	0	ENST00000543371.1:c.578A>G	p.His193Arg	p.H193R	ENST00000543371	NM_001198531.1	193	cAc/cGc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911497	114911497	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	88	201	0	ENST00000543371.1:c.1015T>C	p.Ser339Pro	p.S339P	ENST00000543371	NM_001198531.1	339	Tcc/Ccc																																																																															
IGF2	3481	MSKCC	GRCh37	11	2156648	2156648	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	294	625	0	ENST00000434045.2:c.274del	p.Glu92SerfsTer24	p.E92Sfs*24	ENST00000434045	NM_001127598.1	92	Gag/ag																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741456	17741456	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	347	722	0	ENST00000250003.3:c.127T>C	p.Phe43Leu	p.F43L	ENST00000250003	NM_002478.4	43	Ttc/Ctc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202519	67202519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	254	725	3	ENST00000312629.5:c.1328C>T	p.Thr443Met	p.T443M	ENST00000312629	NM_003952.2	443	aCg/aTg																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514058	69514058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	82	580	0	ENST00000294312.3:c.623C>T	p.Ala208Val	p.A208V	ENST00000294312	NM_005117.2	208	gCc/gTc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589716	69589716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	76	146	0	ENST00000168712.1:c.137G>A	p.Arg46His	p.R46H	ENST00000168712	NM_002007.2	46	cGc/cAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943698	71943698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	336	617	1	ENST00000298229.2:c.1741C>T	p.Arg581Trp	p.R581W	ENST00000298229	NM_001567.3	581	Cgg/Tgg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948207	71948207	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	376	855	0	ENST00000298229.2:c.2920del	p.Ala974ProfsTer157	p.A974Pfs*157	ENST00000298229	NM_001567.3	973	gcG/gc																																																																															
YAP1	10413	MSKCC	GRCh37	11	102056761	102056761	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	26	326	0	ENST00000282441.5:c.701A>G	p.Asp234Gly	p.D234G	ENST00000282441	NM_001130145.2	234	gAt/gGt																																																																															
YAP1	10413	MSKCC	GRCh37	11	102076768	102076768	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	330	641	0	ENST00000282441.5:c.947A>G	p.Glu316Gly	p.E316G	ENST00000282441	NM_001130145.2	316	gAg/gGg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195551	102195551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	57	457	0	ENST00000263464.3:c.311A>G	p.Asn104Ser	p.N104S	ENST00000263464	NM_001165.4	104	aAc/aGc																																																																															
ATM	472	MSKCC	GRCh37	11	108142037	108142037	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	284	556	0	ENST00000278616.4:c.2981T>A	p.Val994Asp	p.V994D	ENST00000278616	NM_000051.3	994	gTc/gAc																																																																															
ATM	472	MSKCC	GRCh37	11	108172516	108172516	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	101	231	0	ENST00000278616.4:c.5319G>T	p.Lys1773Asn	p.K1773N	ENST00000278616	NM_000051.3	1773	aaG/aaT																																																																															
ATM	472	MSKCC	GRCh37	11	108188124	108188124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	172	327	0	ENST00000278616.4:c.6223C>T	p.His2075Tyr	p.H2075Y	ENST00000278616	NM_000051.3	2075	Cat/Tat																																																																															
ATM	472	MSKCC	GRCh37	11	108204639	108204639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	43	315	0	ENST00000278616.4:c.7954C>T	p.Pro2652Ser	p.P2652S	ENST00000278616	NM_000051.3	2652	Cca/Tca																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118359332	118359332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	121	254	0	ENST00000534358.1:c.4336G>A	p.Val1446Met	p.V1446M	ENST00000534358	NM_005933.3	1446	Gtg/Atg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375914	118375915	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	122	452	0	ENST00000534358.1:c.9313dupA	p.Ile3105AsnfsTer8	p.I3105Nfs*8	ENST00000534358	NM_005933.3	3103	caa/cAaa																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125499316	125499316	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	224	507	0	ENST00000428830.2:c.385A>G	p.Arg129Gly	p.R129G	ENST00000428830	NM_001114121.2	129	Agg/Ggg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416952	416953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	102	407	0	ENST00000399788.2:c.3596_3597dup	p.Gly1200LysfsTer10	p.G1200Kfs*10	ENST00000399788	NM_001042603.1	1199	-/AA																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18648997	18648997	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	173	400	0	ENST00000266497.5:c.2672C>T	p.Ala891Val	p.A891V	ENST00000266497		891	gCa/gTa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245089	46245089	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	70	465	0	ENST00000334344.6:c.3183A>T	p.Lys1061Asn	p.K1061N	ENST00000334344	NM_152641.2	1061	aaA/aaT																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245384	46245384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	201	396	0	ENST00000334344.6:c.3478C>A	p.Pro1160Thr	p.P1160T	ENST00000334344	NM_152641.2	1160	Cca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426517	49426517	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	226	825	0	ENST00000301067.7:c.11971C>T	p.Gln3991Ter	p.Q3991*	ENST00000301067	NM_003482.3	3991	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427360	49427360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	255	563	1	ENST00000301067.7:c.11128G>A	p.Gly3710Arg	p.G3710R	ENST00000301067	NM_003482.3	3710	Gga/Aga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435230	49435230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	169	492	0	ENST00000301067.7:c.6323C>T	p.Pro2108Leu	p.P2108L	ENST00000301067	NM_003482.3	2108	cCg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444196	49444196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	221	807	0	ENST00000301067.7:c.3175G>T	p.Gly1059Trp	p.G1059W	ENST00000301067	NM_003482.3	1059	Ggg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445311	49445311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	253	908	1	ENST00000301067.7:c.2155C>T	p.Pro719Ser	p.P719S	ENST00000301067	NM_003482.3	719	Ccg/Tcg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864780	57864780	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	132	594	0	ENST00000228682.2:c.2257C>A	p.Leu753Ile	p.L753I	ENST00000228682	NM_005269.2	753	Ctt/Att																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813438	102813438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	134	499	3	ENST00000307046.8:c.251G>A	p.Arg84Gln	p.R84Q	ENST00000307046	NM_001111285.1	84	cGg/cAg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112893859	112893859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	137	527	0	ENST00000351677.2:c.748G>A	p.Glu250Lys	p.E250K	ENST00000351677	NM_002834.3	250	Gaa/Aaa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120741	115120741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	66	670	0	ENST00000257566.3:c.265C>T	p.Pro89Ser	p.P89S	ENST00000257566	NM_016569.3	89	Cct/Tct																																																																															
RAB35	11021	MSKCC	GRCh37	12	120536882	120536882	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	331	669	0	ENST00000229340.5:c.304T>A	p.Trp102Arg	p.W102R	ENST00000229340	NM_006861.6	102	Tgg/Agg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426829	121426829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	195	448	0	ENST00000257555.6:c.520G>A	p.Ala174Thr	p.A174T	ENST00000257555		174	Gcg/Acg																																																																															
SETD8	387893	MSKCC	GRCh37	12	123879605	123879605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	163	405	1	ENST00000330479.4:c.301G>A	p.Ala101Thr	p.A101T	ENST00000330479	NM_020382.3	101	Gct/Act																																																																															
POLE	5426	MSKCC	GRCh37	12	133219464	133219464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	285	767	1	ENST00000320574.5:c.4670C>T	p.Ala1557Val	p.A1557V	ENST00000320574	NM_006231.2	1557	gCa/gTa																																																																															
POLE	5426	MSKCC	GRCh37	12	133256104	133256104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151325267		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	183	427	1	ENST00000320574.5:c.557C>T	p.Ala186Val	p.A186V	ENST00000320574	NM_006231.2	186	gCg/gTg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557745	21557745	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	56	566	0	ENST00000382592.4:c.2100del	p.Lys702ArgfsTer4	p.K702Rfs*4	ENST00000382592	NM_014572.2	700	agG/ag																																																																															
CDK8	1024	MSKCC	GRCh37	13	26911748	26911748	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	191	489	1	ENST00000381527.3:c.173G>T	p.Gly58Val	p.G58V	ENST00000381527	NM_001260.1	58	gGg/gTg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589381	28589381	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	190	476	0	ENST00000241453.7:c.2666A>G	p.Tyr889Cys	p.Y889C	ENST00000241453	NM_004119.2	889	tAc/tGc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28610144	28610144	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	66	494	0	ENST00000241453.7:c.1346A>G	p.Gln449Arg	p.Q449R	ENST00000241453	NM_004119.2	449	cAg/cGg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964116	28964116	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	142	386	0	ENST00000282397.4:c.1786A>G	p.Asn596Asp	p.N596D	ENST00000282397	NM_002019.4	596	Aat/Gat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32893268	32893268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	126	457	0	ENST00000380152.3:c.122C>T	p.Pro41Leu	p.P41L	ENST00000380152		41	cCc/cTc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907074	32907074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	145	416	0	ENST00000380152.3:c.1459G>A	p.Ala487Thr	p.A487T	ENST00000380152		487	Gca/Aca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910629	32910629	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	65	457	1	ENST00000380152.3:c.2137C>T	p.Gln713Ter	p.Q713*	ENST00000380152		713	Cag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911037	32911037	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	227	494	0	ENST00000380152.3:c.2545G>T	p.Val849Leu	p.V849L	ENST00000380152		849	Gta/Tta																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912770	32912771	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	189	414	0	ENST00000380152.3:c.4283_4284dup	p.Gln1429PhefsTer20	p.Q1429Ffs*20	ENST00000380152		1426	-/TT																																																																															
RB1	5925	MSKCC	GRCh37	13	49051504	49051504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	166	393	0	ENST00000267163.4:c.2677G>A	p.Gly893Arg	p.G893R	ENST00000267163	NM_000321.2	893	Gga/Aga																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434802	110434802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	282	639	2	ENST00000375856.3:c.3599C>T	p.Pro1200Leu	p.P1200L	ENST00000375856	NM_003749.2	1200	cCg/cTg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422035	81422035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	38	315	0	ENST00000298171.2:c.11C>T	p.Ala4Val	p.A4V	ENST00000298171	NM_000369.2	4	gCg/gTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582154	95582154	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	118	233	0	ENST00000343455.3:c.1757T>C	p.Leu586Ser	p.L586S	ENST00000343455	NM_177438.2	586	tTg/tCg																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643795	38643795	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	321	588	0	ENST00000299084.4:c.1265C>A	p.Pro422His	p.P422H	ENST00000299084	NM_152594.2	422	cCt/cAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42042317	42042317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	245	502	0	ENST00000219905.7:c.6512G>T	p.Arg2171Met	p.R2171M	ENST00000219905	NM_001164273.1	2171	aGg/aTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42042378	42042378	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	267	584	0	ENST00000219905.7:c.6573G>T	p.Gln2191His	p.Q2191H	ENST00000219905	NM_001164273.1	2191	caG/caT																																																																															
MGA	23269	MSKCC	GRCh37	15	42058328	42058328	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	165	331	0	ENST00000219905.7:c.8048A>G	p.His2683Arg	p.H2683R	ENST00000219905	NM_001164273.1	2683	cAt/cGt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43713287	43713287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	313	732	1	ENST00000382044.4:c.4186G>A	p.Ala1396Thr	p.A1396T	ENST00000382044	NM_001141980.1	1396	Gct/Act																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43762070	43762070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	63	505	0	ENST00000382044.4:c.1375C>T	p.Pro459Ser	p.P459S	ENST00000382044	NM_001141980.1	459	Cct/Tct																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472621	88472621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	71	353	0	ENST00000360948.2:c.1934G>A	p.Arg645His	p.R645H	ENST00000360948	NM_001012338.2	645	cGc/cAc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680664	88680664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	141	597	0	ENST00000360948.2:c.593C>A	p.Pro198His	p.P198H	ENST00000360948	NM_001012338.2	198	cCt/cAt																																																																															
BLM	641	MSKCC	GRCh37	15	91304138	91304139	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	121	538	0	ENST00000355112.3:c.1543_1544dup	p.Asn515LysfsTer17	p.N515Kfs*17	ENST00000355112	NM_000057.2	512	gga/ggAAa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99192829	99192829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	250	457	0	ENST00000268035.6:c.19G>A	p.Gly7Arg	p.G7R	ENST00000268035	NM_000875.3	7	Gga/Aga																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99491922	99491922	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	103	488	1	ENST00000268035.6:c.3707A>G	p.Asn1236Ser	p.N1236S	ENST00000268035	NM_000875.3	1236	aAc/aGc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640196	3640196	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	417	782	0	ENST00000294008.3:c.3443A>G	p.Glu1148Gly	p.E1148G	ENST00000294008	NM_032444.2	1148	gAa/gGa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3642754	3642754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	370	749	0	ENST00000294008.3:c.2273C>T	p.Ala758Val	p.A758V	ENST00000294008	NM_032444.2	758	gCg/gTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647607	3647607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	380	774	3	ENST00000294008.3:c.1456C>T	p.Arg486Cys	p.R486C	ENST00000294008	NM_032444.2	486	Cgt/Tgt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647684	3647684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	359	712	0	ENST00000294008.3:c.1379G>A	p.Arg460His	p.R460H	ENST00000294008	NM_032444.2	460	cGc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778483	3778483	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	384	938	0	ENST00000262367.5:c.6565T>C	p.Tyr2189His	p.Y2189H	ENST00000262367	NM_004380.2	2189	Tac/Cac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858027	9858027	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	192	450	0	ENST00000330684.3:c.3374A>G	p.Glu1125Gly	p.E1125G	ENST00000330684	NM_001134407.1	1125	gAg/gGg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858741	9858741	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	74	245	0	ENST00000330684.3:c.2660T>C	p.Leu887Pro	p.L887P	ENST00000330684	NM_001134407.1	887	cTg/cCg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23625413	23625413	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	134	398	0	ENST00000261584.4:c.3114-1G>T		p.X1038_splice	ENST00000261584	NM_024675.3	1038																																																																																
CDH1	999	MSKCC	GRCh37	16	68862193	68862193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	155	563	1	ENST00000261769.5:c.2281G>A	p.Gly761Arg	p.G761R	ENST00000261769	NM_004360.3	761	Gga/Aga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821889	72821890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	31	358	0	ENST00000268489.5:c.10285dup	p.Arg3429ProfsTer2	p.R3429Pfs*2	ENST00000268489	NM_006885.3	3429	cgt/cCgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822540	72822540	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	186	443	0	ENST00000268489.5:c.9635del	p.Pro3212ArgfsTer29	p.P3212Rfs*29	ENST00000268489	NM_006885.3	3212	cCg/cg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822657	72822657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	240	631	1	ENST00000268489.5:c.9518C>T	p.Pro3173Leu	p.P3173L	ENST00000268489	NM_006885.3	3173	cCg/cTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828384	72828384	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	188	425	0	ENST00000268489.5:c.8197C>A	p.Arg2733Ser	p.R2733S	ENST00000268489	NM_006885.3	2733	Cgt/Agt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991643	72991643	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	140	559	0	ENST00000268489.5:c.2402A>G	p.Lys801Arg	p.K801R	ENST00000268489	NM_006885.3	801	aAa/aGa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942124	81942125	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	100	586	0	ENST00000359376.3:c.1667dup	p.Lys557GlnfsTer16	p.K557Qfs*16	ENST00000359376	NM_002661.3	554	acg/acGg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341566	89341566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	255	432	1	ENST00000301030.4:c.7504A>G	p.Lys2502Glu	p.K2502E	ENST00000301030	NM_001256183.1	2502	Aag/Gag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89809327	89809327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	223	401	0	ENST00000389301.3:c.3646G>A	p.Ala1216Thr	p.A1216T	ENST00000389301	NM_000135.2	1216	Gcc/Acc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217850	7217850	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	161	560	2	ENST00000380728.2:c.161del	p.Lys54ArgfsTer9	p.K54Rfs*9	ENST00000380728		54	aAg/ag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983279	15983279	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	39	374	0	ENST00000268712.3:c.3500A>G	p.Gln1167Arg	p.Q1167R	ENST00000268712	NM_006311.3	1167	cAg/cGg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983740	15983740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	185	409	0	ENST00000268712.3:c.3382C>T	p.His1128Tyr	p.H1128Y	ENST00000268712	NM_006311.3	1128	Cat/Tat																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15989754	15989754	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	95	196	0	ENST00000268712.3:c.3019C>A	p.Leu1007Ile	p.L1007I	ENST00000268712	NM_006311.3	1007	Ctt/Att																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16062141	16062141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	253	492	0	ENST00000268712.3:c.665C>T	p.Pro222Leu	p.P222L	ENST00000268712	NM_006311.3	222	cCc/cTc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37871995	37871995	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	166	544	2	ENST00000269571.5:c.1316G>A	p.Gly439Asp	p.G439D	ENST00000269571		439	gGc/gAc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40865263	40865263	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	153	598	0	ENST00000428826.2:c.1168A>G	p.Arg390Gly	p.R390G	ENST00000428826		390	Agg/Ggg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41209151	41209151	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	157	484	0	ENST00000357654.3:c.5195A>G	p.His1732Arg	p.H1732R	ENST00000357654	NM_007294.3	1732	cAt/cGt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41215947	41215947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	282	560	1	ENST00000357654.3:c.5096G>A	p.Arg1699Gln	p.R1699Q	ENST00000357654	NM_007294.3	1699	cGg/cAg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245300	41245300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	222	665	0	ENST00000357654.3:c.2248C>T	p.Leu750Phe	p.L750F	ENST00000357654	NM_007294.3	750	Ctc/Ttc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47699308	47699308	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	106	356	0	ENST00000347630.2:c.200G>A	p.Trp67Ter	p.W67*	ENST00000347630	NM_001007230.1	67	tGg/tAg																																																																															
MSI2	124540	MSKCC	GRCh37	17	55674230	55674231	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	182	347	0	ENST00000284073.2:c.459dup	p.Gly154TrpfsTer6	p.G154Wfs*6	ENST00000284073	NM_138962.2	152	-/T																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435047	56435047	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	73	602	0	ENST00000407977.2:c.2090A>C	p.His697Pro	p.H697P	ENST00000407977		697	cAc/cCc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492826	56492826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	143	473	1	ENST00000584437.1:c.113C>A	p.Ser38Tyr	p.S38Y	ENST00000584437		38	tCt/tAt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59878628	59878628	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	143	367	0	ENST00000259008.2:c.1126C>T	p.Gln376Ter	p.Q376*	ENST00000259008	NM_032043.2	376	Caa/Taa																																																																															
CD79B	974	MSKCC	GRCh37	17	62007437	62007437	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	28	315	0	ENST00000392795.3:c.430A>G	p.Met144Val	p.M144V	ENST00000392795	NM_001039933.1	144	Atg/Gtg																																																																															
CD79B	974	MSKCC	GRCh37	17	62007488	62007488	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	158	519	0	ENST00000392795.3:c.379T>C	p.Cys127Arg	p.C127R	ENST00000392795	NM_001039933.1	127	Tgc/Cgc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39575921	39575921	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	172	394	0	ENST00000262039.4:c.854A>T	p.Asp285Val	p.D285V	ENST00000262039	NM_002647.2	285	gAt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581190	48581190	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	171	354	1	ENST00000342988.3:c.494A>T	p.Asp165Val	p.D165V	ENST00000342988	NM_005359.5	165	gAc/gTc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56348560	56348561	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	132	255	0	ENST00000348428.3:c.374dup	p.Gly126ArgfsTer40	p.G126Rfs*40	ENST00000348428	NM_006785.3	123	agc/agCc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56414980	56414980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	237	441	0	ENST00000348428.3:c.2381C>T	p.Ala794Val	p.A794V	ENST00000348428	NM_006785.3	794	gCt/gTt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1620979	1620979	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1329397192		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1201	64	792	3	ENST00000344749.5:c.1081del	p.Gln361ArgfsTer33	p.Q361Rfs*33	ENST00000344749	NM_001136139.2	361	Cag/ag																																																																															
TCF3	6929	MSKCC	GRCh37	19	1632361	1632361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	182	746	0	ENST00000344749.5:c.189C>A	p.Asp63Glu	p.D63E	ENST00000344749	NM_001136139.2	63	gaC/gaA																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2202735	2202735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	266	648	0	ENST00000398665.3:c.744G>T	p.Glu248Asp	p.E248D	ENST00000398665	NM_032482.2	248	gaG/gaT																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210634	2210634	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	246	531	0	ENST00000398665.3:c.1131G>T	p.Glu377Asp	p.E377D	ENST00000398665	NM_032482.2	377	gaG/gaT																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222401	2222401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	149	497	0	ENST00000398665.3:c.3233G>A	p.Ser1078Asn	p.S1078N	ENST00000398665	NM_032482.2	1078	aGc/aAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5258082	5258082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	270	515	0	ENST00000357368.4:c.652G>A	p.Ala218Thr	p.A218T	ENST00000357368	NM_002850.3	218	Gcc/Acc																																																																															
INSR	3643	MSKCC	GRCh37	19	7141702	7141702	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	225	542	0	ENST00000302850.5:c.2668C>T	p.Arg890Ter	p.R890*	ENST00000302850	NM_000208.2	890	Cga/Tga																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250398	10250398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	68	478	0	ENST00000340748.4:c.3854G>A	p.Arg1285His	p.R1285H	ENST00000340748		1285	cGc/cAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600491	10600491	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	303	606	0	ENST00000171111.5:c.1364C>A	p.Pro455Gln	p.P455Q	ENST00000171111	NM_203500.1	455	cCa/cAa																																																																															
CARM1	10498	MSKCC	GRCh37	19	11015748	11015749	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	176	361	0	ENST00000327064.4:c.344dup	p.Asn115LysfsTer76	p.N115Kfs*76	ENST00000327064	NM_199141.1	114	-/A																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105656	11105656	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	242	552	0	ENST00000344626.4:c.1572G>T	p.Lys524Asn	p.K524N	ENST00000344626	NM_003072.3	524	aaG/aaT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11107188	11107188	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	68	512	1	ENST00000344626.4:c.1781del	p.Gly594AspfsTer19	p.G594Dfs*19	ENST00000344626	NM_003072.3	594	Gga/ga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138494	11138494	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	266	543	0	ENST00000344626.4:c.3250C>A	p.Leu1084Ile	p.L1084I	ENST00000344626	NM_003072.3	1084	Ctt/Att																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272072	15272072	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	308	683	0	ENST00000263388.2:c.6367del	p.Glu2124ArgfsTer25	p.E2124Rfs*25	ENST00000263388	NM_000435.2	2123	Ctt/tt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298716	15298716	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	59	704	0	ENST00000263388.2:c.1582G>T	p.Gly528Cys	p.G528C	ENST00000263388	NM_000435.2	528	Ggc/Tgc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354214	15354214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	222	708	0	ENST00000263377.2:c.2666C>T	p.Ala889Val	p.A889V	ENST00000263377	NM_058243.2	889	gCc/gTc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367037	15367037	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	115	254	0	ENST00000263377.2:c.1589A>G	p.Gln530Arg	p.Q530R	ENST00000263377	NM_058243.2	530	cAg/cGg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943481	17943481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	268	496	0	ENST00000458235.1:c.2527C>T	p.Pro843Ser	p.P843S	ENST00000458235	NM_000215.3	843	Ccg/Tcg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955066	17955066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	367	745	2	ENST00000458235.1:c.161G>A	p.Cys54Tyr	p.C54Y	ENST00000458235	NM_000215.3	54	tGc/tAc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965942	18965942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	244	587	2	ENST00000262803.5:c.1435G>A	p.Val479Met	p.V479M	ENST00000262803	NM_002911.3	479	Gtg/Atg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967047	18967047	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	193	607	1	ENST00000262803.5:c.1762T>C	p.Ser588Pro	p.S588P	ENST00000262803	NM_002911.3	588	Tcg/Ccg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218354	36218354	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	322	706	0	ENST00000222270.7:c.4133T>C	p.Ile1378Thr	p.I1378T	ENST00000222270	NM_014727.1	1378	aTc/aCc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224099	36224099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	374	737	2	ENST00000222270.7:c.6649C>T	p.Gln2217Ter	p.Q2217*	ENST00000222270	NM_014727.1	2217	Cag/Tag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229441	36229441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	112	406	1	ENST00000222270.7:c.8131C>T	p.Arg2711Cys	p.R2711C	ENST00000222270	NM_014727.1	2711	Cgt/Tgt																																																																															
AXL	558	MSKCC	GRCh37	19	41759553	41759553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	345	662	0	ENST00000301178.4:c.1976G>A	p.Gly659Asp	p.G659D	ENST00000301178	NM_021913.4	659	gGc/gAc																																																																															
ERF	2077	MSKCC	GRCh37	19	42754535	42754535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	61	764	1	ENST00000222329.4:c.205G>A	p.Val69Ile	p.V69I	ENST00000222329	NM_006494.2	69	Gtt/Att																																																																															
CIC	23152	MSKCC	GRCh37	19	42794506	42794506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	311	793	0	ENST00000575354.2:c.1586G>A	p.Gly529Asp	p.G529D	ENST00000575354	NM_015125.3	529	gGt/gAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42794988	42794988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	281	638	0	ENST00000575354.2:c.2068C>T	p.Pro690Ser	p.P690S	ENST00000575354	NM_015125.3	690	Ccc/Tcc																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731593	47731593	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	83	136	0	ENST00000449228.1:c.199C>A	p.Leu67Ile	p.L67I	ENST00000449228	NM_001127240.2	67	Ctc/Atc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50916691	50916691	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	266	523	0	ENST00000440232.2:c.2166del	p.Phe723SerfsTer5	p.F723Sfs*5	ENST00000440232	NM_002691.3	721	acG/ac																																																																															
POLD1	5424	MSKCC	GRCh37	19	50917074	50917074	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780138978		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	360	768	3	ENST00000440232.2:c.2326C>T	p.Arg776Trp	p.R776W	ENST00000440232	NM_002691.3	776	Cgg/Tgg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505333	25505333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	162	519	0	ENST00000264709.3:c.425G>A	p.Gly142Asp	p.G142D	ENST00000264709	NM_175629.2	142	gGc/gAc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25973274	25973274	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	42	212	0	ENST00000435504.4:c.1151T>C	p.Leu384Pro	p.L384P	ENST00000435504		384	cTg/cCg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982515	25982515	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	89	186	0	ENST00000435504.4:c.776-1G>T		p.X259_splice	ENST00000435504		259																																																																																
ASXL2	55252	MSKCC	GRCh37	2	26022395	26022395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	169	364	0	ENST00000435504.4:c.262C>T	p.Pro88Ser	p.P88S	ENST00000435504		88	Ccg/Tcg																																																																															
ALK	238	MSKCC	GRCh37	2	29416548	29416548	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	110	484	2	ENST00000389048.3:c.4405C>A	p.Pro1469Thr	p.P1469T	ENST00000389048	NM_004304.4	1469	Ccg/Acg																																																																															
ALK	238	MSKCC	GRCh37	2	29416719	29416719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	89	352	0	ENST00000389048.3:c.4234C>T	p.Pro1412Ser	p.P1412S	ENST00000389048	NM_004304.4	1412	Cct/Tct																																																																															
ALK	238	MSKCC	GRCh37	2	29754800	29754800	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	113	392	0	ENST00000389048.3:c.1135C>A	p.Pro379Thr	p.P379T	ENST00000389048	NM_004304.4	379	Ccc/Acc																																																																															
ALK	238	MSKCC	GRCh37	2	30143174	30143174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	238	562	1	ENST00000389048.3:c.352G>A	p.Ala118Thr	p.A118T	ENST00000389048	NM_004304.4	118	Gca/Aca																																																																															
SOS1	6654	MSKCC	GRCh37	2	39224122	39224122	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	189	569	1	ENST00000402219.2:c.3022T>C	p.Tyr1008His	p.Y1008H	ENST00000402219	NM_005633.3	1008	Tat/Cat																																																																															
MSH2	4436	MSKCC	GRCh37	2	47690171	47690171	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	186	399	0	ENST00000233146.2:c.1388T>C	p.Val463Ala	p.V463A	ENST00000233146	NM_000251.2	463	gTg/gCg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47693883	47693883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	271	483	0	ENST00000233146.2:c.1597C>A	p.Leu533Ile	p.L533I	ENST00000233146	NM_000251.2	533	Ctt/Att																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010380	48010380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	100	650	0	ENST00000234420.5:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000234420	NM_000179.2	3	cGa/cAa																																																																															
REL	5966	MSKCC	GRCh37	2	61147754	61147754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	46	339	0	ENST00000295025.8:c.1064G>A	p.Gly355Glu	p.G355E	ENST00000295025	NM_002908.2	355	gGa/gAa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99193581	99193581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	186	496	0	ENST00000074304.5:c.2776A>G	p.Thr926Ala	p.T926A	ENST00000074304	NM_001134224.1	926	Acc/Gcc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198272822	198272822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	188	422	0	ENST00000335508.6:c.1139C>T	p.Pro380Leu	p.P380L	ENST00000335508	NM_012433.2	380	cCt/cTt																																																																															
CASP8	841	MSKCC	GRCh37	2	202149610	202149610	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	205	436	0	ENST00000358485.4:c.1051A>T	p.Ile351Phe	p.I351F	ENST00000358485	NM_001080125.1	351	Atc/Ttc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248710	212248710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	159	335	0	ENST00000342788.4:c.3557C>T	p.Pro1186Leu	p.P1186L	ENST00000342788	NM_005235.2	1186	cCc/cTc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530078	212530078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	23	271	0	ENST00000342788.4:c.1841G>A	p.Cys614Tyr	p.C614Y	ENST00000342788	NM_005235.2	614	tGc/tAc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662842	227662842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	151	554	1	ENST00000305123.5:c.613G>A	p.Val205Met	p.V205M	ENST00000305123	NM_005544.2	205	Gtg/Atg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGG			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	24	197	0	ENST00000375687.4:c.1932_1934dup	p.Gly646dup	p.G646dup	ENST00000375687	NM_015338.5	646	-/GGG																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31368209	31368209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	204	670	1	ENST00000328111.2:c.80G>A	p.Cys27Tyr	p.C27Y	ENST00000328111	NM_006892.3	27	tGc/tAc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31388081	31388081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	93	316	0	ENST00000328111.2:c.1882G>A	p.Val628Met	p.V628M	ENST00000328111	NM_006892.3	628	Gtg/Atg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39746808	39746808	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	58	540	0	ENST00000361337.2:c.1823-1G>A		p.X608_splice	ENST00000361337	NM_003286.2	608																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41420082	41420082	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	26	310	0	ENST00000373198.4:c.239C>A	p.Ser80Tyr	p.S80Y	ENST00000373198	NM_133170.3	80	tCt/tAt																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62319737	62319737	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	79	677	0	ENST00000508582.2:c.1792C>T	p.Arg598Trp	p.R598W	ENST00000508582		598	Cgg/Tgg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259203	36259204	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	99	715	0	ENST00000300305.3:c.287dup	p.Asn96LysfsTer42	p.N96Kfs*42	ENST00000300305		96	aac/aaAc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44515615	44515615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	102	696	1	ENST00000291552.4:c.281G>T	p.Gly94Val	p.G94V	ENST00000291552	NM_006758.2	94	gGg/gTg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656994	45656994	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	199	596	0	ENST00000407780.3:c.162G>A	p.Trp54Ter	p.W54*	ENST00000407780	NM_001283052.1	54	tgG/tgA																																																																															
RAC2	5880	MSKCC	GRCh37	22	37637628	37637628	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	352	770	5	ENST00000249071.6:c.106G>A	p.Val36Met	p.V36M	ENST00000249071	NM_002872.4	36	Gtg/Atg																																																																															
EP300	2033	MSKCC	GRCh37	22	41513436	41513436	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	266	592	1	ENST00000263253.7:c.340G>T	p.Gly114Ter	p.G114*	ENST00000263253	NM_001429.3	114	Gga/Tga																																																																															
EP300	2033	MSKCC	GRCh37	22	41547846	41547846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	191	381	1	ENST00000263253.7:c.2827C>T	p.Pro943Ser	p.P943S	ENST00000263253	NM_001429.3	943	Cca/Tca																																																																															
PPARG	5468	MSKCC	GRCh37	3	12422989	12422989	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	35	433	0	ENST00000287820.6:c.479A>G	p.Lys160Arg	p.K160R	ENST00000287820	NM_015869.4	160	aAg/aGg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067433	37067433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	61	504	0	ENST00000231790.2:c.1344G>T	p.Glu448Asp	p.E448D	ENST00000231790	NM_000249.3	448	gaG/gaT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164477	47164477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	120	335	0	ENST00000409792.3:c.1649G>A	p.Ser550Asn	p.S550N	ENST00000409792	NM_014159.6	550	aGt/aAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165230	47165230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	100	325	0	ENST00000409792.3:c.896G>A	p.Ser299Asn	p.S299N	ENST00000409792	NM_014159.6	299	aGt/aAt																																																																															
MST1	4485	MSKCC	GRCh37	3	49723029	49723029	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	184	358	0	ENST00000449682.2:c.1387G>A	p.Ala463Thr	p.A463T	ENST00000449682	NM_020998.3	463	Gct/Act																																																																															
MST1R	4486	MSKCC	GRCh37	3	49932949	49932949	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	117	733	0	ENST00000296474.3:c.2995C>A	p.Leu999Met	p.L999M	ENST00000296474	NM_002447.2	999	Ctg/Atg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940111	49940112	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	230	549	0	ENST00000296474.3:c.931dup	p.Ala311GlyfsTer26	p.A311Gfs*26	ENST00000296474	NM_002447.2	311	gcc/gGcc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940243	49940243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	53	616	1	ENST00000296474.3:c.800C>T	p.Ala267Val	p.A267V	ENST00000296474	NM_002447.2	267	gCc/gTc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52713639	52713639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	126	412	0	ENST00000394830.3:c.89G>A	p.Gly30Asp	p.G30D	ENST00000394830	NM_018313.4	30	gGc/gAc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72861887	72861887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	244	551	0	ENST00000325599.8:c.995C>A	p.Pro332Gln	p.P332Q	ENST00000325599	NM_018130.2	332	cCa/cAa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920478	134920478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	254	575	1	ENST00000398015.3:c.2293C>A	p.Leu765Ile	p.L765I	ENST00000398015	NM_004441.4	765	Ctc/Atc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134977922	134977922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	256	589	0	ENST00000398015.3:c.2915T>C	p.Met972Thr	p.M972T	ENST00000398015	NM_004441.4	972	aTg/aCg																																																																															
ATR	545	MSKCC	GRCh37	3	142204007	142204007	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369309229		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	181	442	0	ENST00000350721.4:c.6196C>T	p.Arg2066Trp	p.R2066W	ENST00000350721	NM_001184.3	2066	Cgg/Tgg																																																																															
ATR	545	MSKCC	GRCh37	3	142274739	142274740	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	46	324	0	ENST00000350721.4:c.2319_2320dup	p.Ile774LysfsTer6	p.I774Kfs*6	ENST00000350721	NM_001184.3	774	ata/aAAta																																																																															
ATR	545	MSKCC	GRCh37	3	142278206	142278207	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	123	511	0	ENST00000350721.4:c.1618dup	p.Tyr540LeufsTer6	p.Y540Lfs*6	ENST00000350721	NM_001184.3	540	tac/tTac																																																																															
ATR	545	MSKCC	GRCh37	3	142281577	142281578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	143	524	0	ENST00000350721.4:c.666dup	p.Arg223Ter	p.R223*	ENST00000350721	NM_001184.3	222	-/T																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAA			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	125	681	0	ENST00000295797.4:c.824_826dup	p.Lys275dup	p.K275dup	ENST00000295797	NM_002740.5	275	tta/ttAAAa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185169181	185169181	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	39	451	0	ENST00000265026.3:c.1276C>T	p.Gln426Ter	p.Q426*	ENST00000265026	NM_004721.4	426	Cag/Tag																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505039	186505039	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	128	270	0	ENST00000323963.5:c.895A>G	p.Thr299Ala	p.T299A	ENST00000323963		299	Aca/Gca																																																																															
BCL6	604	MSKCC	GRCh37	3	187444518	187444518	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	167	432	1	ENST00000232014.4:c.1708+1G>A		p.X570_splice	ENST00000232014	NM_001130845.1	570																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1805488	1805488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	274	664	5	ENST00000260795.2:c.1000G>A	p.Ala334Thr	p.A334T	ENST00000260795		334	Gcc/Acc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807167	1807167	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751635116		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	307	722	3	ENST00000260795.2:c.1498G>A	p.Ala500Thr	p.A500T	ENST00000260795		500	Gcc/Acc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55152124	55152124	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	225	629	0	ENST00000257290.5:c.2556A>C	p.Lys852Asn	p.K852N	ENST00000257290	NM_006206.4	852	aaA/aaC																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213920	66213920	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	116	353	0	ENST00000273854.3:c.2510G>A	p.Gly837Glu	p.G837E	ENST00000273854	NM_004439.5	837	gGa/gAa																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84384746	84384747	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	42	280	0	ENST00000321945.7:c.696dup	p.Val233SerfsTer5	p.V233Sfs*5	ENST00000321945	NM_139076.2	232	-/A																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007349	143007349	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	101	330	0	ENST00000262992.4:c.2435del	p.Asn812IlefsTer10	p.N812Ifs*10	ENST00000262992	NM_001101669.1	812	aAt/at																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143067091	143067091	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	173	374	0	ENST00000262992.4:c.1622A>G	p.Lys541Arg	p.K541R	ENST00000262992	NM_001101669.1	541	aAa/aGa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541534	187541534	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	115	370	0	ENST00000441802.2:c.6206T>C	p.Val2069Ala	p.V2069A	ENST00000441802	NM_005245.3	2069	gTc/gCc																																																																															
SDHA	6389	MSKCC	GRCh37	5	226094	226094	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	202	428	1	ENST00000264932.6:c.553C>T	p.Gln185Ter	p.Q185*	ENST00000264932	NM_004168.2	185	Cag/Tag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31468155	31468155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	208	501	0	ENST00000344624.3:c.2257C>T	p.Arg753Cys	p.R753C	ENST00000344624		753	Cgt/Tgt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38942976	38942976	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	180	395	0	ENST00000357387.3:c.5011A>G	p.Arg1671Gly	p.R1671G	ENST00000357387	NM_152756.3	1671	Agg/Ggg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38959918	38959918	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	79	293	1	ENST00000357387.3:c.2014G>T	p.Gly672Ter	p.G672*	ENST00000357387	NM_152756.3	672	Gga/Tga																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750455	57750456	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	209	437	0	ENST00000274289.3:c.2012dup	p.Asn671LysfsTer15	p.N671Kfs*15	ENST00000274289	NM_006622.3	671	aat/aaAt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79952352	79952352	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	203	483	0	ENST00000265081.6:c.358+2T>C		p.X120_splice	ENST00000265081	NM_002439.4	120																																																																																
MSH3	4437	MSKCC	GRCh37	5	80083470	80083470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	56	661	0	ENST00000265081.6:c.2522C>A	p.Ala841Asp	p.A841D	ENST00000265081	NM_002439.4	841	gCt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112102105	112102105	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	88	295	0	ENST00000257430.4:c.218A>G	p.Lys73Arg	p.K73R	ENST00000257430	NM_000038.5	73	aAa/aGa																																																																															
APC	324	MSKCC	GRCh37	5	112162846	112162846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	173	406	0	ENST00000257430.4:c.1450G>A	p.Glu484Lys	p.E484K	ENST00000257430	NM_000038.5	484	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112178280	112178280	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	179	396	0	ENST00000257430.4:c.6992del	p.Pro2331LeufsTer6	p.P2331Lfs*6	ENST00000257430	NM_000038.5	2330	tCc/tc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131924458	131924458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	222	415	1	ENST00000265335.6:c.1131G>T	p.Gln377His	p.Q377H	ENST00000265335		377	caG/caT																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497349	149497349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	129	549	0	ENST00000261799.4:c.2969C>T	p.Ala990Val	p.A990V	ENST00000261799	NM_002609.3	990	gCc/gTc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500882	149500882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	49	448	0	ENST00000261799.4:c.2348C>A	p.Pro783His	p.P783H	ENST00000261799	NM_002609.3	783	cCt/cAt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562759	176562759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	253	540	1	ENST00000439151.2:c.655C>T	p.His219Tyr	p.H219Y	ENST00000439151	NM_022455.4	219	Cac/Tac																																																																															
E2F3	1871	MSKCC	GRCh37	6	20480087	20480087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	109	370	0	ENST00000346618.3:c.404G>A	p.Arg135Lys	p.R135K	ENST00000346618	NM_001949.4	135	aGg/aAg																																																																															
E2F3	1871	MSKCC	GRCh37	6	20488478	20488478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	199	417	0	ENST00000346618.3:c.1134A>C	p.Lys378Asn	p.K378N	ENST00000346618	NM_001949.4	378	aaA/aaC																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045691	26045691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	27	251	0	ENST00000540144.1:c.53G>A	p.Arg18His	p.R18H	ENST00000540144	NM_003531.2	18	cGc/cAc																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225480	26225480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	43	294	0	ENST00000360408.1:c.98C>T	p.Thr33Met	p.T33M	ENST00000360408	NM_003532.2	33	aCg/aTg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912276	29912276	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	268	467	0	ENST00000376809.5:c.896-1G>T		p.X299_splice	ENST00000376809	NM_002116.7	299																																																																																
MDC1	9656	MSKCC	GRCh37	6	30672554	30672554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	165	528	0	ENST00000376406.3:c.4406C>A	p.Pro1469His	p.P1469H	ENST00000376406	NM_014641.2	1469	cCt/cAt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673397	30673397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	296	631	0	ENST00000376406.3:c.3563G>T	p.Arg1188Met	p.R1188M	ENST00000376406	NM_014641.2	1188	aGg/aTg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675701	30675701	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	98	744	0	ENST00000376406.3:c.2655A>T	p.Arg885Ser	p.R885S	ENST00000376406	NM_014641.2	885	agA/agT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178567	32178567	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	272	625	0	ENST00000375023.3:c.2827del	p.Ala943ProfsTer105	p.A943Pfs*105	ENST00000375023	NM_004557.3	943	Gcc/cc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797830	32797830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	28	384	0	ENST00000374899.4:c.1672G>A	p.Gly558Ser	p.G558S	ENST00000374899	NM_018833.2	558	Ggt/Agt																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805536	32805536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	374	774	1	ENST00000374899.4:c.475C>A	p.Leu159Ile	p.L159I	ENST00000374899	NM_018833.2	159	Ctt/Att																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818840	32818840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	302	655	2	ENST00000354258.4:c.1111G>A	p.Val371Met	p.V371M	ENST00000354258	NM_000593.5	371	Gtg/Atg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32820966	32820966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	109	720	2	ENST00000354258.4:c.628G>A	p.Ala210Thr	p.A210T	ENST00000354258	NM_000593.5	210	Gca/Aca																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821442	32821442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	280	597	3	ENST00000354258.4:c.152G>A	p.Gly51Asp	p.G51D	ENST00000354258	NM_000593.5	51	gGc/gAc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287212	33287213	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	46	460	0	ENST00000374542.5:c.1884dup	p.Cys629LeufsTer29	p.C629Lfs*29	ENST00000374542	NM_001141970.1	628	-/C																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120846	94120846	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	101	469	0	ENST00000369303.4:c.205C>T	p.Arg69Ter	p.R69*	ENST00000369303	NM_004440.3	69	Cga/Tga																																																																															
PRDM1	639	MSKCC	GRCh37	6	106547331	106547331	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	177	431	0	ENST00000369096.4:c.568A>G	p.Ile190Val	p.I190V	ENST00000369096	NM_001198.3	190	Atc/Gtc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609800	117609800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	229	503	0	ENST00000368508.3:c.6899G>A	p.Cys2300Tyr	p.C2300Y	ENST00000368508	NM_002944.2	2300	tGt/tAt																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138201285	138201285	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	57	427	0	ENST00000237289.4:c.1984T>C	p.Cys662Arg	p.C662R	ENST00000237289	NM_001270507.1	662	Tgc/Cgc																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983071	149983071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	240	534	0	ENST00000253339.5:c.3187G>A	p.Gly1063Arg	p.G1063R	ENST00000253339		1063	Gga/Aga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157222590	157222591	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	229	510	0	ENST00000346085.5:c.1862dup	p.His622AlafsTer31	p.H622Afs*31	ENST00000346085	NM_020732.3	619	-/C																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405956	157405956	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	137	478	0	ENST00000346085.5:c.2198G>T	p.Gly733Val	p.G733V	ENST00000346085	NM_020732.3	733	gGg/gTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157431687	157431687	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	157	460	0	ENST00000346085.5:c.2363A>G	p.Gln788Arg	p.Q788R	ENST00000346085	NM_020732.3	788	cAg/cGg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522010	157522010	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	180	416	0	ENST00000346085.5:c.4282A>G	p.Ser1428Gly	p.S1428G	ENST00000346085	NM_020732.3	1428	Agc/Ggc																																																																															
PARK2	5071	MSKCC	GRCh37	6	161970031	161970031	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	224	590	0	ENST00000366898.1:c.938A>G	p.Asn313Ser	p.N313S	ENST00000366898	NM_004562.2	313	aAc/aGc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729828	41729828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	32	279	0	ENST00000242208.4:c.701G>A	p.Gly234Asp	p.G234D	ENST00000242208	NM_002192.2	234	gGc/gAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55211156	55211156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	227	507	0	ENST00000275493.2:c.399G>T	p.Lys133Asn	p.K133N	ENST00000275493	NM_005228.3	133	aaG/aaT																																																																															
HGF	3082	MSKCC	GRCh37	7	81336661	81336661	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	171	315	0	ENST00000222390.5:c.1561G>T	p.Gly521Ter	p.G521*	ENST00000222390	NM_000601.4	521	Gga/Tga																																																																															
HGF	3082	MSKCC	GRCh37	7	81350138	81350138	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	199	394	0	ENST00000222390.5:c.1194T>A	p.Asn398Lys	p.N398K	ENST00000222390	NM_000601.4	398	aaT/aaA																																																																															
HGF	3082	MSKCC	GRCh37	7	81399226	81399226	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	307	707	0	ENST00000222390.5:c.62T>C	p.Leu21Pro	p.L21P	ENST00000222390	NM_000601.4	21	cTg/cCg																																																																															
MET	4233	MSKCC	GRCh37	7	116397514	116397514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	160	418	1	ENST00000397752.3:c.1886C>T	p.Ala629Val	p.A629V	ENST00000397752	NM_000245.2	629	gCc/gTc																																																																															
MET	4233	MSKCC	GRCh37	7	116399505	116399505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	173	396	0	ENST00000397752.3:c.2325G>T	p.Met775Ile	p.M775I	ENST00000397752	NM_000245.2	775	atG/atT																																																																															
SMO	6608	MSKCC	GRCh37	7	128829270	128829270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	200	647	0	ENST00000249373.3:c.278C>T	p.Ala93Val	p.A93V	ENST00000249373	NM_005631.4	93	gCc/gTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140434476	140434476	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	118	477	0	ENST00000288602.6:c.2222A>G	p.Glu741Gly	p.E741G	ENST00000288602	NM_004333.4	741	gAg/gGg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453195	140453195	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	42	300	0	ENST00000288602.6:c.1742-2A>G		p.X581_splice	ENST00000288602	NM_004333.4	581																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151845181	151845181	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	210	473	0	ENST00000262189.6:c.13831T>A	p.Phe4611Ile	p.F4611I	ENST00000262189	NM_170606.2	4611	Ttt/Att																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151868350	151868350	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	125	325	0	ENST00000262189.6:c.9452A>G	p.Gln3151Arg	p.Q3151R	ENST00000262189	NM_170606.2	3151	cAg/cGg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877084	151877084	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	193	428	0	ENST00000262189.6:c.7277A>G	p.Glu2426Gly	p.E2426G	ENST00000262189	NM_170606.2	2426	gAg/gGg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878262	151878262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	260	513	0	ENST00000262189.6:c.6683G>T	p.Arg2228Met	p.R2228M	ENST00000262189	NM_170606.2	2228	aGg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900068	151900068	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	149	439	0	ENST00000262189.6:c.4043A>G	p.Tyr1348Cys	p.Y1348C	ENST00000262189	NM_170606.2	1348	tAc/tGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151927407	151927407	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	30	47	0	ENST00000262189.6:c.2770-1G>T		p.X924_splice	ENST00000262189	NM_170606.2	924																																																																																
WHSC1L1	54904	MSKCC	GRCh37	8	38162894	38162894	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	95	618	0	ENST00000317025.8:c.2312G>T	p.Gly771Val	p.G771V	ENST00000317025	NM_023034.1	771	gGg/gTg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187126	38187126	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	248	647	0	ENST00000317025.8:c.1351A>G	p.Ser451Gly	p.S451G	ENST00000317025	NM_023034.1	451	Agc/Ggc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38314891	38314891	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	32	438	0	ENST00000425967.3:c.173del	p.Pro58ArgfsTer78	p.P58Rfs*78	ENST00000425967	NM_001174067.1	58	cCg/cg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370864	55370864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	141	562	0	ENST00000297316.4:c.166G>A	p.Ala56Thr	p.A56T	ENST00000297316	NM_022454.3	56	Gcc/Acc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372052	55372052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	41	514	1	ENST00000297316.4:c.742G>A	p.Ala248Thr	p.A248T	ENST00000297316	NM_022454.3	248	Gcc/Acc																																																																															
LYN	4067	MSKCC	GRCh37	8	56911028	56911028	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	247	551	0	ENST00000519728.1:c.1174A>T	p.Ile392Phe	p.I392F	ENST00000519728	NM_002350.3	392	Att/Ttt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965417	68965417	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	341	747	0	ENST00000288368.4:c.1033del	p.Thr345HisfsTer13	p.T345Hfs*13	ENST00000288368	NM_024870.2	343	gcA/gc																																																																															
NBN	4683	MSKCC	GRCh37	8	90967511	90967511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	123	268	0	ENST00000265433.3:c.1397G>T	p.Arg466Met	p.R466M	ENST00000265433	NM_002485.4	466	aGg/aTg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141545607	141545607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	223	753	0	ENST00000220592.5:c.2231C>T	p.Thr744Ile	p.T744I	ENST00000220592	NM_012154.3	744	aCc/aTc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738858	145738858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	274	706	0	ENST00000428558.2:c.2207C>T	p.Ala736Val	p.A736V	ENST00000428558	NM_004260.3	736	gCc/gTc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739732	145739732	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	258	516	0	ENST00000428558.2:c.1719G>T	p.Gln573His	p.Q573H	ENST00000428558	NM_004260.3	573	caG/caT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500802	8500802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	185	391	0	ENST00000356435.5:c.2080G>A	p.Gly694Ser	p.G694S	ENST00000356435		694	Ggc/Agc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	273	482	0	ENST00000304494.5:c.330G>T	p.Trp110Cys	p.W110C	ENST00000304494	NM_000077.4	110	tgG/tgT																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87325592	87325592	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	84	381	0	ENST00000277120.3:c.469A>G	p.Met157Val	p.M157V	ENST00000277120		157	Atg/Gtg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231349	98231349	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	277	499	0	ENST00000331920.6:c.1934A>G	p.Tyr645Cys	p.Y645C	ENST00000331920	NM_000264.3	645	tAc/tGc																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128322023	128322023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	176	591	0	ENST00000265960.3:c.737C>T	p.Pro246Leu	p.P246L	ENST00000265960	NM_001006617.1	246	cCc/cTc																																																																															
ABL1	25	MSKCC	GRCh37	9	133747526	133747526	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	40	457	0	ENST00000318560.5:c.833T>C	p.Met278Thr	p.M278T	ENST00000318560	NM_005157.4	278	aTg/aCg																																																																															
ABL1	25	MSKCC	GRCh37	9	133760724	133760724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	272	775	1	ENST00000318560.5:c.3047G>A	p.Arg1016His	p.R1016H	ENST00000318560	NM_005157.4	1016	cGc/cAc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300016	137300016	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137938878		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	281	622	0	ENST00000481739.1:c.301G>A	p.Val101Ile	p.V101I	ENST00000481739	NM_002957.4	101	Gtc/Atc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409082	139409082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	199	831	0	ENST00000277541.6:c.2087G>A	p.Gly696Asp	p.G696D	ENST00000277541	NM_017617.3	696	gGc/gAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923082	39923082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	285	255	1	ENST00000378444.4:c.3626G>A	p.Arg1209His	p.R1209H	ENST00000378444	NM_001123385.1	1209	cGc/cAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934192	39934192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	333	321	1	ENST00000378444.4:c.407C>T	p.Ala136Val	p.A136V	ENST00000378444	NM_001123385.1	136	gCc/gTc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44937676	44937676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	150	325	0	ENST00000377967.4:c.2864C>T	p.Pro955Leu	p.P955L	ENST00000377967	NM_021140.2	955	cCa/cTa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949968	44949968	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	15	168	2	ENST00000377967.4:c.3737C>T	p.Ala1246Val	p.A1246V	ENST00000377967	NM_021140.2	1246	gCc/gTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410849	63410849	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	261	267	0	ENST00000330258.3:c.2318T>C	p.Leu773Pro	p.L773P	ENST00000330258	NM_152424.3	773	cTg/cCg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411237	63411237	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	84	330	0	ENST00000330258.3:c.1930del	p.Gln644ArgfsTer9	p.Q644Rfs*9	ENST00000330258	NM_152424.3	644	Cag/ag																																																																															
BTK	695	MSKCC	GRCh37	X	100604932	100604932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	197	230	0	ENST00000308731.7:c.1921C>T	p.Arg641Cys	p.R641C	ENST00000308731	NM_000061.2	641	Cgt/Tgt																																																																															
XIAP	331	MSKCC	GRCh37	X	123020147	123020147	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	340	339	0	ENST00000355640.3:c.635C>A	p.Pro212His	p.P212H	ENST00000355640		212	cCt/cAt																																																																															
ALK	238	MSKCC	GRCh37	2	29416548	29416548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	35	486	0	ENST00000389048.3:c.4405C>T	p.Pro1469Ser	p.P1469S	ENST00000389048	NM_004304.4	1469	Ccg/Tcg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211909	36211909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1225	127	869	0	ENST00000222270.7:c.1660C>A	p.Pro554Thr	p.P554T	ENST00000222270	NM_014727.1	554	Ccc/Acc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25973274	25973277	+	missense_variant	Missense_Mutation	ONP	AGGC	AGGC	GGGT			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	17	204	0	ENST00000435504.4:c.1148_1151delinsACCC	p.Gly383_Leu384delinsAspPro	p.G383_L384delinsDP	ENST00000435504		383	gGCCTg/gACCCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	725	485	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	451	417	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578192	7578192	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	402	620	0	ENST00000269305.4:c.657delC	p.Tyr220MetfsTer27	p.Y220Mfs*27	ENST00000269305	NM_001126112.2	219	ccC/cc																																																																															
BARD1	580	MSKCC	GRCh37	2	215632276	215632276	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	223	530	0	ENST00000260947.4:c.1498G>C	p.Asp500His	p.D500H	ENST00000260947	NM_000465.2	500	Gat/Cat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47127765	47127765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	103	460	0	ENST00000409792.3:c.5317C>T	p.Arg1773Cys	p.R1773C	ENST00000409792	NM_014159.6	1773	Cgt/Tgt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1632383	1632383	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	196	706	0	ENST00000344749.5:c.167C>G	p.Ser56Ter	p.S56*	ENST00000344749	NM_001136139.2	56	tCa/tGa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041572	14041572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	113	450	0	ENST00000311895.7:c.2119G>A	p.Glu707Lys	p.E707K	ENST00000311895	NM_005236.2	707	Gaa/Aaa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243809203	243809203	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	94	344	0	ENST00000263826.5:c.421A>G	p.Lys141Glu	p.K141E	ENST00000263826	NM_005465.4	141	Aaa/Gaa																																																																															
ATM	472	MSKCC	GRCh37	11	108218035	108218035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	237	398	1	ENST00000278616.4:c.8614C>A	p.His2872Asn	p.H2872N	ENST00000278616	NM_000051.3	2872	Cat/Aat																																																																															
NF1	4763	MSKCC	GRCh37	17	29508788	29508788	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	201	434	0	ENST00000358273.4:c.715C>T	p.Gln239Ter	p.Q239*	ENST00000358273	NM_001042492.2	239	Cag/Tag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219778	36219778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	117	704	0	ENST00000222270.7:c.4675G>A	p.Asp1559Asn	p.D1559N	ENST00000222270	NM_014727.1	1559	Gat/Aat																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128015243	128015243	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	115	520	0	ENST00000285398.2:c.2278G>T	p.Glu760Ter	p.E760*	ENST00000285398	NM_000122.1	760	Gag/Tag																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72842125	72842125	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	246	365	0	ENST00000325599.8:c.1123G>T	p.Ala375Ser	p.A375S	ENST00000325599	NM_018130.2	375	Gcg/Tcg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081599	143081599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	266	492	0	ENST00000262992.4:c.1475C>A	p.Thr492Lys	p.T492K	ENST00000262992	NM_001101669.1	492	aCa/aAa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38957819	38957819	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	42	294	0	ENST00000357387.3:c.2434C>G	p.Pro812Ala	p.P812A	ENST00000357387	NM_152756.3	812	Cca/Gca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8525025	8525025	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	148	333	2	ENST00000356435.5:c.579G>T	p.Gln193His	p.Q193H	ENST00000356435		193	caG/caT																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844713	156844713	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010965-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			659	110	769	0	ENST00000524377.1:c.1267G>T	p.Gly423Cys	p.G423C	ENST00000524377	NM_002529.3	423	Ggc/Tgc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195965	102195966	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTCAATATACACAG			P-0010965-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	21	333	0	ENST00000263464.3:c.730_731insTATACACAGTTCAA	p.Arg244IlefsTer12	p.R244Ifs*12	ENST00000263464	NM_001165.4	242	act/acTTCAATATACACAGt																																																																															
RB1	5925	MSKCC	GRCh37	13	48942725	48942726	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0010965-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	93	339	0	ENST00000267163.4:c.1117_1118del	p.Thr373SerfsTer3	p.T373Sfs*3	ENST00000267163	NM_000321.2	371	cCA/c																																																																															
DIS3	22894	MSKCC	GRCh37	13	73335926	73335926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010965-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	95	392	0	ENST00000377767.4:c.2369T>C	p.Leu790Pro	p.L790P	ENST00000377767	NM_014953.3	790	cTt/cCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0010965-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			513	66	594	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15995341	15995341	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010965-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			369	30	370	0	ENST00000268712.3:c.2852del	p.Gly951GlufsTer4	p.G951Efs*4	ENST00000268712	NM_006311.3	951	gGa/ga																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395613	45395613	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0010965-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			377	46	399	0	ENST00000262160.6:c.520+1G>T		p.X174_splice	ENST00000262160	NM_005901.5	174																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40944537	40944538	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0010965-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			442	271	463	1	ENST00000373198.4:c.1964_1965delinsAA	p.Ala655Glu	p.A655E	ENST00000373198	NM_133170.3	655	gCC/gAA																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521616	89521616	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0010965-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			338	26	381	0	ENST00000336596.2:c.2693C>A	p.Pro898Gln	p.P898Q	ENST00000336596	NM_005233.5	898	cCa/cAa																																																																															
ATR	545	MSKCC	GRCh37	3	142178202	142178202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010965-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			327	26	274	0	ENST00000350721.4:c.7216C>T	p.Leu2406Phe	p.L2406F	ENST00000350721	NM_001184.3	2406	Ctt/Ttt																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778240	27778240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010965-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	51	459	0	ENST00000369163.2:c.389G>T	p.Arg130Leu	p.R130L	ENST00000369163	NM_003536.2	130	cGt/cTt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289543	33289543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010965-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			630	62	668	0	ENST00000374542.5:c.160G>T	p.Gly54Cys	p.G54C	ENST00000374542	NM_001141970.1	54	Ggc/Tgc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662585	117662585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010965-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	49	422	2	ENST00000368508.3:c.4880G>A	p.Gly1627Asp	p.G1627D	ENST00000368508	NM_002944.2	1627	gGt/gAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55260529	55260529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010965-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			576	49	511	0	ENST00000275493.2:c.2696G>A	p.Ser899Asn	p.S899N	ENST00000275493	NM_005228.3	899	aGc/aAc																																																																															
SMO	6608	MSKCC	GRCh37	7	128852282	128852282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010965-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			465	43	571	0	ENST00000249373.3:c.2354C>T	p.Ser785Leu	p.S785L	ENST00000249373	NM_005631.4	785	tCg/tTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0021626-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			873	318	688	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0027762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	164	473	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578551	7578553	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	AGT	AGT	-			P-0027762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	129	593	0	ENST00000269305.4:c.377_379del	p.Tyr126del	p.Y126del	ENST00000269305	NM_001126112.2	126	tACTcc/tcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928231	178928232	+	inframe_insertion	In_Frame_Ins	INS	-	-	TAG			P-0027762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	72	325	0	ENST00000263967.3:c.1418_1420dup	p.Leu473_Glu474insVal	p.L473_E474insV	ENST00000263967	NM_006218.2	473	tta/tTAGta																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056057	26056057	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	55	223	0	ENST00000343677.2:c.600del	p.Lys201ArgfsTer?	p.K201Rfs*?	ENST00000343677	NM_005319.3	200	ccC/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398255	25398255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	83	867	0	ENST00000256078.4:c.64C>A	p.Gln22Lys	p.Q22K	ENST00000256078	NM_033360.2	22	Cag/Aag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602341	10602341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	89	987	1	ENST00000171111.5:c.1237C>T	p.Arg413Cys	p.R413C	ENST00000171111	NM_203500.1	413	Cgt/Tgt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982968	201982968	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	61	903	1	ENST00000359651.3:c.817A>T	p.Thr273Ser	p.T273S	ENST00000359651		273	Acc/Tcc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435644	18435644	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	55	564	0	ENST00000266497.5:c.629G>T	p.Gly210Val	p.G210V	ENST00000266497		210	gGc/gTc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40481792	40481793	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	C			P-0027817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	69	607	0	ENST00000264657.5:c.1111dup	p.Asp371GlyfsTer15	p.D371Gfs*15	ENST00000264657	NM_139276.2	371	gac/gGac																																																																															
STK11	6794	MSKCC	GRCh37	19	1207042	1207042	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	84	888	0	ENST00000326873.7:c.131del	p.Lys44SerfsTer7	p.K44Sfs*7	ENST00000326873	NM_000455.4	44	Aag/ag																																																																															
AR	367	MSKCC	GRCh37	X	66766348	66766348	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	18	202	0	ENST00000374690.3:c.1360G>T	p.Gly454Trp	p.G454W	ENST00000374690	NM_000044.3	454	Ggg/Tgg																																																																															
MED12	9968	MSKCC	GRCh37	X	70344883	70344883	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	64	986	1	ENST00000374080.3:c.2113G>T	p.Asp705Tyr	p.D705Y	ENST00000374080		705	Gat/Tat																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564372	86564372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	65	466	1	ENST00000274376.6:c.104G>T	p.Arg35Leu	p.R35L	ENST00000274376	NM_002890.2	35	cGg/cTg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729871	41729871	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	55	459	0	ENST00000242208.4:c.658G>T	p.Val220Phe	p.V220F	ENST00000242208	NM_002192.2	220	Gtc/Ttc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	102	684	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0027818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	66	562	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0027819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	31	344	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
XIAP	331	MSKCC	GRCh37	X	123026603	123026603	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	50	798	0	ENST00000355640.3:c.1079C>A	p.Pro360Gln	p.P360Q	ENST00000355640		360	cCa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578378	7578379	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	215	692	0	ENST00000269305.4:c.551dup	p.Asp184GlufsTer2	p.D184Efs*2	ENST00000269305	NM_001126112.2	184	gat/gaAt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739325	145739325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	291	770	0	ENST00000428558.2:c.2045G>A	p.Arg682Lys	p.R682K	ENST00000428558	NM_004260.3	682	aGg/aAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	91	725	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220370	1220370	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	108	657	0	ENST00000326873.7:c.465-2A>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
SDHA	6389	MSKCC	GRCh37	5	226092	226092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	67	434	0	ENST00000264932.6:c.551G>T	p.Gly184Val	p.G184V	ENST00000264932	NM_004168.2	184	gGg/gTg																																																																															
MET	4233	MSKCC	GRCh37	7	116395569	116395569	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	81	578	0	ENST00000397752.3:c.1862C>T	p.Thr621Ile	p.T621I	ENST00000397752	NM_000245.2	621	aCa/aTa																																																																															
TET1	80312	MSKCC	GRCh37	10	70446282	70446282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	89	769	2	ENST00000373644.4:c.5222G>T	p.Arg1741Leu	p.R1741L	ENST00000373644	NM_030625.2	1741	cGc/cTc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625180	69625180	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	61	795	0	ENST00000334134.2:c.613G>T	p.Gly205Trp	p.G205W	ENST00000334134	NM_005247.2	205	Ggg/Tgg																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349130	11349130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	42	291	0	ENST00000332029.2:c.206G>T	p.Arg69Leu	p.R69L	ENST00000332029	NM_003745.1	69	cGc/cTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29550532	29550532	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	40	711	0	ENST00000358273.4:c.1792A>G	p.Lys598Glu	p.K598E	ENST00000358273	NM_001042492.2	598	Aag/Gag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790018	40790018	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	42	634	0	ENST00000373198.4:c.2713G>C	p.Gly905Arg	p.G905R	ENST00000373198	NM_133170.3	905	Ggc/Cgc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626158	12626183	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TGAAACAAAGCCCAAGAATGCTCTCA	TGAAACAAAGCCCAAGAATGCTCTCA	-			P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	26	331	0	ENST00000251849.4:c.1804-27_1804-2del		p.X602_splice	ENST00000251849	NM_002880.3	602																																																																																
LYN	4067	MSKCC	GRCh37	8	56866422	56866422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	86	766	0	ENST00000519728.1:c.669G>T	p.Glu223Asp	p.E223D	ENST00000519728	NM_002350.3	223	gaG/gaT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69030834	69030834	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	131	603	0	ENST00000288368.4:c.3376A>T	p.Ser1126Cys	p.S1126C	ENST00000288368	NM_024870.2	1126	Agc/Tgc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53224128	53224129	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	127	456	0	ENST00000375401.3:c.3422_3423delinsTT	p.Arg1141Ile	p.R1141I	ENST00000375401	NM_004187.3	1141	aGG/aTT																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843634	156843634	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201035170		P-0027824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	241	820	4	ENST00000524377.1:c.1060G>A	p.Val354Ile	p.V354I	ENST00000524377	NM_002529.3	354	Gtc/Atc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163318754	163318755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1094	279	561	1	ENST00000271452.3:c.1150dup	p.Arg384LysfsTer6	p.R384Kfs*6	ENST00000271452	NM_145697.2	382	gaa/gAaa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562493	21562493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	10	37	0	ENST00000382592.4:c.1426G>A	p.Ala476Thr	p.A476T	ENST00000382592	NM_014572.2	476	Gcc/Acc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643503	38643503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	1124	674	4	ENST00000299084.4:c.973C>T	p.Arg325Ter	p.R325*	ENST00000299084	NM_152594.2	325	Cga/Tga																																																																															
CYLD	1540	MSKCC	GRCh37	16	50828336	50828336	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	182	475	0	ENST00000398568.2:c.2674G>T	p.Asp892Tyr	p.D892Y	ENST00000398568	NM_001042412.1	892	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	363	594	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	250	508	11	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59770808	59770808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	195	562	1	ENST00000259008.2:c.2558C>T	p.Pro853Leu	p.P853L	ENST00000259008	NM_032043.2	853	cCa/cTa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79974804	79974804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	528	632	1	ENST00000265081.6:c.1232G>A	p.Arg411His	p.R411H	ENST00000265081	NM_002439.4	411	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112173278	112173278	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	101	295	0	ENST00000257430.4:c.1987C>T	p.Gln663Ter	p.Q663*	ENST00000257430	NM_000038.5	663	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	177	311	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	79	496	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0028033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	81	643	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205684	128205684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	66	667	1	ENST00000341105.2:c.191C>T	p.Ala64Val	p.A64V	ENST00000341105	NM_032638.4	64	gCt/gTt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1952878	1952878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	88	785	0	ENST00000382891.5:c.1961C>T	p.Ser654Leu	p.S654L	ENST00000382891	NM_133335.3	654	tCa/tTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	206	454	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	168	548	0	ENST00000269305.4:c.535C>G	p.His179Asp	p.H179D	ENST00000269305	NM_001126112.2	179	Cat/Gat																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99486169	99486169	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	180	390	0	ENST00000268035.6:c.3475G>C	p.Asp1159His	p.D1159H	ENST00000268035	NM_000875.3	1159	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	161	689	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	75	408	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27059260	27059260	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	170	514	0	ENST00000324856.7:c.1897C>T	p.Gln633Ter	p.Q633*	ENST00000324856	NM_006015.4	633	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	145	523	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692794	89692794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	82	377	0	ENST00000371953.3:c.278A>G	p.His93Arg	p.H93R	ENST00000371953	NM_000314.4	93	cAt/cGt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436145	56436145	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	56	643	0	ENST00000407977.2:c.992C>G	p.Ser331Cys	p.S331C	ENST00000407977		331	tCt/tGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685313	89685313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	114	382	0	ENST00000371953.3:c.208C>G	p.Leu70Val	p.L70V	ENST00000371953	NM_000314.4	70	Ctt/Gtt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134245	2134245	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	55	542	0	ENST00000219476.3:c.4022G>T	p.Ser1341Ile	p.S1341I	ENST00000219476	NM_000548.3	1341	aGc/aTc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40353820	40353820	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	134	570	0	ENST00000293328.3:c.2300G>T	p.Arg767Leu	p.R767L	ENST00000293328	NM_012448.3	767	cGg/cTg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489782	40489782	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	76	515	0	ENST00000264657.5:c.644G>C	p.Arg215Thr	p.R215T	ENST00000264657	NM_139276.2	215	aGa/aCa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436052	56436052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	46	491	0	ENST00000407977.2:c.1085C>T	p.Ser362Phe	p.S362F	ENST00000407977		362	tCc/tTc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39537586	39537586	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	60	452	0	ENST00000262039.4:c.120A>T	p.Glu40Asp	p.E40D	ENST00000262039	NM_002647.2	40	gaA/gaT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916843	178916843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	96	674	1	ENST00000263967.3:c.230C>T	p.Ala77Val	p.A77V	ENST00000263967	NM_006218.2	77	gCa/gTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927475	178927476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	127	461	0	ENST00000263967.3:c.1241dup	p.Ala415CysfsTer2	p.A415Cfs*2	ENST00000263967	NM_006218.2	413	aag/aaGg																																																																															
TET2	54790	MSKCC	GRCh37	4	106196930	106196930	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	102	288	1	ENST00000380013.4:c.5263G>T	p.Glu1755Ter	p.E1755*	ENST00000380013	NM_001127208.2	1755	Gaa/Taa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637762	176637763	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	152	693	0	ENST00000439151.2:c.2363dup	p.Ser789LysfsTer20	p.S789Kfs*20	ENST00000439151	NM_022455.4	788	cga/cGga																																																																															
E2F3	1871	MSKCC	GRCh37	6	20490584	20490584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	124	618	0	ENST00000346618.3:c.1321G>A	p.Glu441Lys	p.E441K	ENST00000346618	NM_001949.4	441	Gag/Aag																																																																															
HGF	3082	MSKCC	GRCh37	7	81358920	81358920	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	96	422	0	ENST00000222390.5:c.1040+1G>T		p.X347_splice	ENST00000222390	NM_000601.4	347																																																																																
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0028053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	31	830	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																															
MST1	4485	MSKCC	GRCh37	3	49722761	49722761	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs62262682		P-0028055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	16	22	2	ENST00000449682.2:c.1478G>T	p.Arg493Leu	p.R493L	ENST00000449682	NM_020998.3	493	cGt/cTt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256717	16256720	+	frameshift_variant	Frame_Shift_Del	DEL	CTAT	CTAT	-			P-0028055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	344	591	0	ENST00000375759.3:c.3984_3987del	p.Val1330Ter	p.V1330*	ENST00000375759	NM_015001.2	1328	CTATct/ct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692787	89692787	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	100	382	0	ENST00000371953.3:c.271G>T	p.Glu91Ter	p.E91*	ENST00000371953	NM_000314.4	91	Gaa/Taa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940136	71940157	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CTCCCAATGGGCTGAGCACCGT	CTCCCAATGGGCTGAGCACCGT	-			P-0028055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	30	666	0	ENST00000298229.2:c.524_545del	p.Pro175ArgfsTer5	p.P175Rfs*5	ENST00000298229	NM_001567.3	174	gCTCCCAATGGGCTGAGCACCGTc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	151	417	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0027144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	126	627	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600398	10600398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	82	715	0	ENST00000171111.5:c.1457C>T	p.Ser486Leu	p.S486L	ENST00000171111	NM_203500.1	486	tCa/tTa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755653	57755653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	69	665	0	ENST00000274289.3:c.134C>T	p.Pro45Leu	p.P45L	ENST00000274289	NM_006622.3	45	cCt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	70	489	3	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574004	7574005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	149	774	0	ENST00000269305.4:c.1022dup	p.Arg342ProfsTer5	p.R342Pfs*5	ENST00000269305	NM_001126112.2	341	ttc/ttTc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112431	115112431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	289	516	1	ENST00000257566.3:c.1309C>T	p.His437Tyr	p.H437Y	ENST00000257566	NM_016569.3	437	Cat/Tat																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502663	149502663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	185	471	3	ENST00000261799.4:c.2125C>T	p.Arg709Cys	p.R709C	ENST00000261799	NM_002609.3	709	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0027953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	113	534	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125222	47125222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	58	309	0	ENST00000409792.3:c.6048G>T	p.Trp2016Cys	p.W2016C	ENST00000409792	NM_014159.6	2016	tgG/tgT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057733	27057733	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	167	718	1	ENST00000324856.7:c.1441C>T	p.Gln481Ter	p.Q481*	ENST00000324856	NM_006015.4	481	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111494	8111494	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	156	546	0	ENST00000346208.3:c.980T>C	p.Leu327Pro	p.L327P	ENST00000346208		327	cTc/cCc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47143026	47143027	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTTGTCC			P-0027953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	60	524	0	ENST00000409792.3:c.4930_4936dup	p.Leu1646ArgfsTer22	p.L1646Rfs*22	ENST00000409792	NM_014159.6	1646	ctg/cGGACAACtg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185184634	185184713	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAGTATCCTGGGACCTACAAACGACACCCTGTTCGTCCTATCATCCATCCCAATGCCATGGAGAAACTCATGAAAAGG	AGAAGTATCCTGGGACCTACAAACGACACCCTGTTCGTCCTATCATCCATCCCAATGCCATGGAGAAACTCATGAAAAGG	-			P-0027953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	60	356	0	ENST00000265026.3:c.1527_1606del	p.Lys510ArgfsTer43	p.K510Rfs*43	ENST00000265026	NM_004721.4	509	aAGAAGTATCCTGGGACCTACAAACGACACCCTGTTCGTCCTATCATCCATCCCAATGCCATGGAGAAACTCATGAAAAGG/a																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0027985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	72	347	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
CDH1	999	MSKCC	GRCh37	16	68842414	68842414	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	96	579	0	ENST00000261769.5:c.476delC	p.Pro159LeufsTer56	p.P159Lfs*56	ENST00000261769	NM_004360.3	159	Cct/ct																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0027987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	29	612	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	36	562	3	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	13	409	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518190	8518190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	19	323	0	ENST00000356435.5:c.1201C>T	p.Arg401Trp	p.R401W	ENST00000356435		401	Cgg/Tgg																																																																															
PARP1	142	MSKCC	GRCh37	1	226574031	226574031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201975538		P-0027987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	14	327	0	ENST00000366794.5:c.830C>T	p.Ser277Leu	p.S277L	ENST00000366794	NM_001618.3	277	tCg/tTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094384	27094384	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	23	470	0	ENST00000324856.7:c.3092C>G	p.Thr1031Ser	p.T1031S	ENST00000324856	NM_006015.4	1031	aCt/aGt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434545	110434545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	21	580	0	ENST00000375856.3:c.3856C>T	p.Arg1286Trp	p.R1286W	ENST00000375856	NM_003749.2	1286	Cgg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5243987	5243987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	24	593	0	ENST00000357368.4:c.1495G>A	p.Val499Met	p.V499M	ENST00000357368	NM_002850.3	499	Gtg/Atg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18971667	18971667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	26	645	0	ENST00000262803.5:c.2333C>T	p.Thr778Met	p.T778M	ENST00000262803	NM_002911.3	778	aCg/aTg																																																																															
SMO	6608	MSKCC	GRCh37	7	128846425	128846425	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	22	402	2	ENST00000249373.3:c.1261C>T	p.Arg421Ter	p.R421*	ENST00000249373	NM_005631.4	421	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0027990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	36	479	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117377	115117378	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0027990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	52	414	0	ENST00000257566.3:c.796_797insAA	p.Ser266LysfsTer17	p.S266Kfs*17	ENST00000257566	NM_016569.3	266	agt/aAAgt																																																																															
CBFB	865	MSKCC	GRCh37	16	67070557	67070557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	24	223	0	ENST00000412916.2:c.181G>A	p.Gly61Arg	p.G61R	ENST00000412916		61	Gga/Aga																																																																															
CDH1	999	MSKCC	GRCh37	16	68844182	68844182	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	87	598	0	ENST00000261769.5:c.770A>C	p.Asp257Ala	p.D257A	ENST00000261769	NM_004360.3	257	gAc/gCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0027994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	100	308	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399937	139399937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	231	872	0	ENST00000277541.6:c.4411G>A	p.Ala1471Thr	p.A1471T	ENST00000277541	NM_017617.3	1471	Gcg/Acg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111446	8111447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0027994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	163	508	0	ENST00000346208.3:c.936_937dup	p.Ala313GlufsTer43	p.A313Efs*43	ENST00000346208		311	agg/agGAg																																																																															
CBFB	865	MSKCC	GRCh37	16	67100693	67100693	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	144	470	1	ENST00000412916.2:c.391C>T	p.Arg131Ter	p.R131*	ENST00000412916		131	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0027996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	128	508	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
SMO	6608	MSKCC	GRCh37	7	128852243	128852243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149170801		P-0027996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	44	691	0	ENST00000249373.3:c.2315G>A	p.Arg772His	p.R772H	ENST00000249373	NM_005631.4	772	cGc/cAc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95593018	95593018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	101	498	0	ENST00000343455.3:c.802G>A	p.Glu268Lys	p.E268K	ENST00000343455	NM_177438.2	268	Gaa/Aaa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0028006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	123	578	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934578		P-0028006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	124	635	1	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040911	47040911	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	113	373	0	ENST00000329236.7:c.1207G>T	p.Glu403Ter	p.E403*	ENST00000329236	NM_001204466.1	403	Gag/Tag																																																																															
RET	5979	MSKCC	GRCh37	10	43602016	43602016	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	80	645	0	ENST00000355710.3:c.1060T>A	p.Tyr354Asn	p.Y354N	ENST00000355710	NM_020975.4	354	Tat/Aat																																																																															
RB1	5925	MSKCC	GRCh37	13	49027228	49027231	+	frameshift_variant	Frame_Shift_Del	DEL	AATC	AATC	-			P-0028006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	58	462	0	ENST00000267163.4:c.1796_1799del	p.Asn599ThrfsTer11	p.N599Tfs*11	ENST00000267163	NM_000321.2	599	AATCac/ac																																																																															
MGA	23269	MSKCC	GRCh37	15	42021361	42021361	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0028006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	51	287	0	ENST00000219905.7:c.3658-1G>T		p.X1220_splice	ENST00000219905	NM_001164273.1	1220																																																																																
ALK	238	MSKCC	GRCh37	2	29416551	29416551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	120	566	1	ENST00000389048.3:c.4402G>A	p.Gly1468Arg	p.G1468R	ENST00000389048	NM_004304.4	1468	Ggg/Agg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499681	8499681	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	33	438	0	ENST00000356435.5:c.2288C>G	p.Pro763Arg	p.P763R	ENST00000356435		763	cCc/cGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	241	415	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0028012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	62	404	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
RET	5979	MSKCC	GRCh37	10	43620336	43620336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	69	359	0	ENST00000355710.3:c.2945G>A	p.Arg982His	p.R982H	ENST00000355710	NM_020975.4	982	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0028015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	391	606	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0028015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	433	440	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347756	347756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	236	788	2	ENST00000262320.3:c.1750G>A	p.Ala584Thr	p.A584T	ENST00000262320	NM_003502.3	584	Gct/Act																																																																															
PGR	5241	MSKCC	GRCh37	11	100962553	100962553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	381	516	0	ENST00000325455.5:c.1844G>A	p.Arg615His	p.R615H	ENST00000325455	NM_001202474.3	615	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097802	27097802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	121	399	0	ENST00000324856.7:c.3391C>T	p.Gln1131Ter	p.Q1131*	ENST00000324856	NM_006015.4	1131	Cag/Tag																																																																															
BRAF	673	MSKCC	GRCh37	7	140487359	140487359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	231	694	0	ENST00000288602.6:c.1166G>A	p.Arg389His	p.R389H	ENST00000288602	NM_004333.4	389	cGt/cAt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2979480	2979480	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	219	547	0	ENST00000396946.4:c.767A>G	p.Asp256Gly	p.D256G	ENST00000396946	NM_032415.4	256	gAc/gGc																																																																															
RET	5979	MSKCC	GRCh37	10	43601927	43601927	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	289	716	1	ENST00000355710.3:c.971G>A	p.Trp324Ter	p.W324*	ENST00000355710	NM_020975.4	324	tGg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579359	7579360	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0028020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	268	669	0	ENST00000269305.4:c.326_327dupTC	p.Arg110SerfsTer14	p.R110Sfs*14	ENST00000269305	NM_001126112.2	109	-/TC																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112769553	112769553	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	158	561	0	ENST00000369452.4:c.1505G>T	p.Gly502Val	p.G502V	ENST00000369452	NM_007373.3	502	gGa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	102	456	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0027540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	189	398	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220718	1220718	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0027540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	127	464	0	ENST00000326873.7:c.734+2T>A		p.X245_splice	ENST00000326873	NM_000455.4	245																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5223012	5223012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	155	530	0	ENST00000357368.4:c.2791C>T	p.His931Tyr	p.H931Y	ENST00000357368	NM_002850.3	931	Cac/Tac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602907	10602907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	206	679	1	ENST00000171111.5:c.671C>T	p.Ser224Phe	p.S224F	ENST00000171111	NM_203500.1	224	tCc/tTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121082	11121082	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	146	505	0	ENST00000344626.4:c.2149G>T	p.Glu717Ter	p.E717*	ENST00000344626	NM_003072.3	717	Gaa/Taa																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795049	242795049	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	208	746	0	ENST00000334409.5:c.160T>A	p.Cys54Ser	p.C54S	ENST00000334409	NM_005018.2	54	Tgc/Agc																																																																															
ERG	2078	MSKCC	GRCh37	21	39755492	39755492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	105	360	0	ENST00000288319.7:c.1273C>T	p.Pro425Ser	p.P425S	ENST00000288319	NM_182918.3	425	Cca/Tca																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039611	47039611	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0027540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	115	190	0	ENST00000329236.7:c.829G>T	p.Glu277Ter	p.E277*	ENST00000329236	NM_001204466.1	277	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	125	522	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175600	112175600	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	148	385	0	ENST00000257430.4:c.4312delA	p.Thr1438HisfsTer35	p.T1438Hfs*35	ENST00000257430	NM_000038.5	1437	Aaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579485	7579485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	218	685	0	ENST00000269305.4:c.202G>T	p.Glu68Ter	p.E68*	ENST00000269305	NM_001126112.2	68	Gag/Tag																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9770578	9770578	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	125	660	0	ENST00000377346.4:c.66del	p.Asp23ThrfsTer10	p.D23Tfs*10	ENST00000377346	NM_005026.3	22	gTt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577111	7577111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	436	719	2	ENST00000269305.4:c.827C>G	p.Ala276Gly	p.A276G	ENST00000269305	NM_001126112.2	276	gCc/gGc																																																																															
RB1	5925	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0027865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	190	358	0	ENST00000267163.4:c.1215+1G>T		p.X405_splice	ENST00000267163	NM_000321.2	405																																																																																
FANCA	2175	MSKCC	GRCh37	16	89816229	89816229	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	430	760	5	ENST00000389301.3:c.3148G>C	p.Glu1050Gln	p.E1050Q	ENST00000389301	NM_000135.2	1050	Gag/Cag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218521	36218521	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0027865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	1284	536	2	ENST00000222270.7:c.4300C>T	p.Gln1434Ter	p.Q1434*	ENST00000222270	NM_014727.1	1434	Cag/Tag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94124444	94124444	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	75	518	0	ENST00000369303.4:c.139T>A	p.Trp47Arg	p.W47R	ENST00000369303	NM_004440.3	47	Tgg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0027874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	338	614	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685304	89685310	+	frameshift_variant	Frame_Shift_Del	DEL	ATATACA	ATATACA	-			P-0027874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	223	479	4	ENST00000371953.3:c.201_207del	p.Tyr68PhefsTer29	p.Y68Ffs*29	ENST00000371953	NM_000314.4	67	ATATACAat/at																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743858	40743858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	184	584	5	ENST00000373198.4:c.3137G>A	p.Arg1046His	p.R1046H	ENST00000373198	NM_133170.3	1046	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0027877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	48	364	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256528	16256528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	97	622	1	ENST00000375759.3:c.3793C>T	p.Arg1265Ter	p.R1265*	ENST00000375759	NM_015001.2	1265	Cga/Tga																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645884	67645884	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	65	552	0	ENST00000264010.4:c.812G>C	p.Cys271Ser	p.C271S	ENST00000264010	NM_006565.3	271	tGc/tCc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198268419	198268419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	49	518	0	ENST00000335508.6:c.1609C>T	p.Pro537Ser	p.P537S	ENST00000335508	NM_012433.2	537	Cct/Tct																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275654	41275666	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGCCCTTTGTC	CTTGCCCTTTGTC	-			P-0027877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	35	446	0	ENST00000349496.5:c.1550_1562del	p.Leu517ProfsTer16	p.L517Pfs*16	ENST00000349496	NM_001904.3	517	CTTGCCCTTTGTCcc/cc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168721	56168728	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCCTT	GCAGCCTT	-			P-0027877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	52	468	0	ENST00000399503.3:c.1575_1582del	p.Gln525HisfsTer13	p.Q525Hfs*13	ENST00000399503	NM_005921.1	525	caGCAGCCTTtg/catg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178338	56178338	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	47	346	0	ENST00000399503.3:c.3311del	p.Ala1104ValfsTer13	p.A1104Vfs*13	ENST00000399503	NM_005921.1	1104	gCt/gt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	194	662	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0027883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	229	789	1	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043381	180043381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	99	650	3	ENST00000261937.6:c.3205G>A	p.Val1069Ile	p.V1069I	ENST00000261937	NM_182925.4	1069	Gtc/Atc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	213	548	0	ENST00000371953.3:c.389G>C	p.Arg130Pro	p.R130P	ENST00000371953	NM_000314.4	130	cGa/cCa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589589	67589591	+	inframe_deletion	In_Frame_Del	DEL	AAT	AAT	-			P-0027884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	188	436	0	ENST00000274335.5:c.1353_1355del	p.Glu451_Tyr452delinsAsp	p.E451_Y452delinsD	ENST00000274335		451	gAATat/gat																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114169	115114169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	348	709	2	ENST00000257566.3:c.1048G>A	p.Ala350Thr	p.A350T	ENST00000257566	NM_016569.3	350	Gcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0027889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	21	609	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	51	752	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5208380	5208380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	47	676	0	ENST00000357368.4:c.5510G>T	p.Arg1837Leu	p.R1837L	ENST00000357368	NM_002850.3	1837	cGg/cTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610155	10610155	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	65	811	0	ENST00000171111.5:c.555C>G	p.Ile185Met	p.I185M	ENST00000171111	NM_203500.1	185	atC/atG																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224523	36224523	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1134	106	973	1	ENST00000222270.7:c.6985C>A	p.Pro2329Thr	p.P2329T	ENST00000222270	NM_014727.1	2329	Ccc/Acc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1936926	1936926	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	54	806	0	ENST00000382891.5:c.1611A>C	p.Glu537Asp	p.E537D	ENST00000382891	NM_133335.3	537	gaA/gaC																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979207	93979207	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	19	416	0	ENST00000369303.4:c.1621A>C	p.Lys541Gln	p.K541Q	ENST00000369303	NM_004440.3	541	Aaa/Caa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465632	8465632	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs144936979		P-0027889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	49	664	1	ENST00000356435.5:c.3548G>T	p.Gly1183Val	p.G1183V	ENST00000356435		1183	gGg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	16	595	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604766	48604777	+	inframe_deletion	In_Frame_Del	DEL	CACCGGGCCCTC	CACCGGGCCCTC	-			P-0027891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	19	580	0	ENST00000342988.3:c.1590_1601del	p.His530_Leu533del	p.H530_L533del	ENST00000342988	NM_005359.5	530	CACCGGGCCCTC/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027750-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			577	261	494	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112173837	112173838	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0027750-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	179	364	0	ENST00000257430.4:c.2547_2548del	p.Asp849GlufsTer62	p.D849Efs*62	ENST00000257430	NM_000038.5	849	gAT/g																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813438	102813438	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027750-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			714	120	481	0	ENST00000307046.8:c.251G>T	p.Arg84Leu	p.R84L	ENST00000307046	NM_001111285.1	84	cGg/cTg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133989	41133989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027750-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			652	171	437	1	ENST00000379561.5:c.1639C>T	p.Pro547Ser	p.P547S	ENST00000379561	NM_002015.3	547	Ccc/Tcc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727463	88727463	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027750-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			554	156	472	2	ENST00000360948.2:c.316C>A	p.Gln106Lys	p.Q106K	ENST00000360948	NM_001012338.2	106	Caa/Aaa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341572	89341572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027750-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			456	150	462	0	ENST00000301030.4:c.7498C>T	p.Pro2500Ser	p.P2500S	ENST00000301030	NM_001256183.1	2500	Ccc/Tcc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026112	71026112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027750-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	359	379	0	ENST00000318789.4:c.1510del	p.Arg504AlafsTer23	p.R504Afs*23	ENST00000318789	NM_032682.5	504	Cgc/gc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410934	63410934	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027750-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			823	180	658	4	ENST00000330258.3:c.2233T>A	p.Tyr745Asn	p.Y745N	ENST00000330258	NM_152424.3	745	Tac/Aac																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411748	63411748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027750-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			791	490	776	0	ENST00000330258.3:c.1419del	p.Ser474ProfsTer67	p.S474Pfs*67	ENST00000330258	NM_152424.3	473	gaC/ga																																																																															
BTK	695	MSKCC	GRCh37	X	100611162	100611162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027750-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			739	152	496	0	ENST00000308731.7:c.1444C>T	p.Leu482Phe	p.L482F	ENST00000308731	NM_000061.2	482	Ctc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0027760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	198	465	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0027760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	195	523	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395776	45395776	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	125	314	0	ENST00000262160.6:c.358C>T	p.Arg120Ter	p.R120*	ENST00000262160	NM_005901.5	120	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175784	112175799	+	frameshift_variant	Frame_Shift_Del	DEL	ATGGATTTTCTTGTTC	ATGGATTTTCTTGTTC	-			P-0027760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	189	283	0	ENST00000257430.4:c.4495_4510del	p.Gly1499ProfsTer3	p.G1499Pfs*3	ENST00000257430	NM_000038.5	1498	gATGGATTTTCTTGTTCa/ga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911512	114911512	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	137	278	0	ENST00000543371.1:c.1030G>T	p.Glu344Ter	p.E344*	ENST00000543371	NM_001198531.1	344	Gaa/Taa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962788	2962788	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201948130		P-0027760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	184	490	1	ENST00000396946.4:c.2120G>A	p.Arg707His	p.R707H	ENST00000396946	NM_032415.4	707	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	290	567	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143114337	143114337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	91	461	1	ENST00000262992.4:c.1084G>A	p.Asp362Asn	p.D362N	ENST00000262992	NM_001101669.1	362	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112154942	112154942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	74	581	2	ENST00000257430.4:c.1213C>T	p.Arg405Ter	p.R405*	ENST00000257430	NM_000038.5	405	Cga/Tga																																																																															
ALK	238	MSKCC	GRCh37	2	29443675	29443675	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1034835558		P-0027761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	286	580	1	ENST00000389048.3:c.3542G>A	p.Arg1181His	p.R1181H	ENST00000389048	NM_004304.4	1181	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175902	112175903	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0027761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	27	276	0	ENST00000257430.4:c.4612_4613del	p.Glu1538IlefsTer5	p.E1538Ifs*5	ENST00000257430	NM_000038.5	1537	acAGaa/acaa																																																																															
RET	5979	MSKCC	GRCh37	10	43600621	43600621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	87	505	2	ENST00000355710.3:c.847G>A	p.Val283Met	p.V283M	ENST00000355710	NM_020975.4	283	Gtg/Atg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907071	32907071	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	95	446	0	ENST00000380152.3:c.1456C>T	p.Gln486Ter	p.Q486*	ENST00000380152		486	Cag/Tag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89345482	89345482	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	67	405	0	ENST00000301030.4:c.7468G>A	p.Val2490Met	p.V2490M	ENST00000301030	NM_001256183.1	2490	Gtg/Atg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264450	30264450	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	93	569	0	ENST00000322652.5:c.185C>G	p.Ala62Gly	p.A62G	ENST00000322652	NM_015355.2	62	gCa/gGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0027763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	208	702	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	58	199	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564081	139564081	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200217167		P-0027763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	151	549	2	ENST00000308874.7:c.221G>A	p.Arg74His	p.R74H	ENST00000308874		74	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108218078	108218083	+	inframe_deletion	In_Frame_Del	DEL	TACATA	TACATA	-			P-0027763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	139	355	0	ENST00000278616.4:c.8659_8664del	p.His2887_Ile2888del	p.H2887_I2888del	ENST00000278616	NM_000051.3	2886	gTACATAta/gta																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220326	5220326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	160	529	0	ENST00000357368.4:c.3494G>A	p.Arg1165His	p.R1165H	ENST00000357368	NM_002850.3	1165	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112174724	112174724	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	113	296	0	ENST00000257430.4:c.3433G>T	p.Glu1145Ter	p.E1145*	ENST00000257430	NM_000038.5	1145	Gaa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845260	151845261	+	missense_variant	Missense_Mutation	DNP	CC	CC	GG			P-0027763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	78	333	0	ENST00000262189.6:c.13751_13752inv	p.Arg4584Pro	p.R4584P	ENST00000262189	NM_170606.2	4584	cGG/cCC																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0027766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	157	433	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0027766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	203	535	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280142	66280142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	84	262	2	ENST00000273854.3:c.1547C>T	p.Thr516Met	p.T516M	ENST00000273854	NM_004439.5	516	aCg/aTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25973061	25973061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	103	380	2	ENST00000435504.4:c.1364C>T	p.Pro455Leu	p.P455L	ENST00000435504		455	cCg/cTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2114414	2114414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	189	659	0	ENST00000219476.3:c.1585G>A	p.Asp529Asn	p.D529N	ENST00000219476	NM_000548.3	529	Gac/Aac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778389	3778394	+	inframe_deletion	In_Frame_Del	DEL	CCGGCA	CCGGCA	-			P-0027766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	160	515	0	ENST00000262367.5:c.6654_6659del	p.Ala2219_Gly2220del	p.A2219_G2220del	ENST00000262367	NM_004380.2	2218	agTGCCGGc/agc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14021925	14021925	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	164	424	0	ENST00000311895.7:c.625C>A	p.Pro209Thr	p.P209T	ENST00000311895	NM_005236.2	209	Cct/Act																																																																															
EP300	2033	MSKCC	GRCh37	22	41574579	41574579	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	186	651	0	ENST00000263253.7:c.6864G>C	p.Gln2288His	p.Q2288H	ENST00000263253	NM_001429.3	2288	caG/caC																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200021	128200021	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	160	573	0	ENST00000341105.2:c.1284C>G	p.Phe428Leu	p.F428L	ENST00000341105	NM_032638.4	428	ttC/ttG																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043967	180043967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	139	522	0	ENST00000261937.6:c.3029C>T	p.Thr1010Ile	p.T1010I	ENST00000261937	NM_182925.4	1010	aCc/aTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0027812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	165	520	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579485	7579485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	302	601	0	ENST00000269305.4:c.202G>T	p.Glu68Ter	p.E68*	ENST00000269305	NM_001126112.2	68	Gag/Tag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18691209	18691209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	144	409	1	ENST00000266497.5:c.3320G>A	p.Arg1107Lys	p.R1107K	ENST00000266497		1107	aGa/aAa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246227	46246227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	137	426	1	ENST00000334344.6:c.4321C>T	p.Gln1441Ter	p.Q1441*	ENST00000334344	NM_152641.2	1441	Caa/Taa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416717	121416717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	175	675	0	ENST00000257555.6:c.146C>A	p.Ser49Tyr	p.S49Y	ENST00000257555		49	tCc/tAc																																																																															
MAX	4149	MSKCC	GRCh37	14	65560459	65560459	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	137	452	0	ENST00000358664.4:c.138G>C	p.Leu46Phe	p.L46F	ENST00000358664	NM_002382.4	46	ttG/ttC																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991922	72991922	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	131	495	0	ENST00000268489.5:c.2123A>C	p.Gln708Pro	p.Q708P	ENST00000268489	NM_006885.3	708	cAg/cCg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346236	89346236	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	57	300	0	ENST00000301030.4:c.6714C>G	p.Ser2238Arg	p.S2238R	ENST00000301030	NM_001256183.1	2238	agC/agG																																																																															
RARA	5914	MSKCC	GRCh37	17	38512341	38512341	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	116	546	0	ENST00000254066.5:c.1252G>C	p.Glu418Gln	p.E418Q	ENST00000254066	NM_000964.3	418	Gag/Cag																																																																															
MET	4233	MSKCC	GRCh37	7	116339416	116339416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	49	421	0	ENST00000397752.3:c.278C>T	p.Pro93Leu	p.P93L	ENST00000397752	NM_000245.2	93	cCa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	248	574	0	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47155365	47155365	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0027813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	136	436	0	ENST00000409792.3:c.4715+1G>T		p.X1572_splice	ENST00000409792	NM_014159.6	1572																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27089776	27089777	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0027813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	149	450	1	ENST00000324856.7:c.2732_2732+1delinsTT		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																																
TBX3	6926	MSKCC	GRCh37	12	115109730	115109731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	281	652	0	ENST00000257566.3:c.2147dup	p.Ala717GlyfsTer13	p.A717Gfs*13	ENST00000257566	NM_016569.3	716	gcg/gcCg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28609769	28609769	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	145	565	1	ENST00000241453.7:c.1460C>A	p.Ala487Asp	p.A487D	ENST00000241453	NM_004119.2	487	gCt/gAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032207	10032207	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	134	647	0	ENST00000330684.3:c.616C>A	p.Leu206Met	p.L206M	ENST00000330684	NM_001134407.1	206	Ctg/Atg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129968	55129968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	159	595	0	ENST00000257290.5:c.502G>T	p.Val168Leu	p.V168L	ENST00000257290	NM_006206.4	168	Gta/Tta																																																																															
STK19	8859	MSKCC	GRCh37	6	31939814	31939814	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	61	681	0	ENST00000375331.2:c.41A>G	p.Gln14Arg	p.Q14R	ENST00000375331	NM_004197.1	14	cAg/cGg																																																																															
LYN	4067	MSKCC	GRCh37	8	56864536	56864536	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	40	581	0	ENST00000519728.1:c.499C>G	p.Leu167Val	p.L167V	ENST00000519728	NM_002350.3	167	Ctg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0027814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	95	658	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	156	582	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0027828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	4051	559	4	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753660142		P-0027828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	198	667	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																															
CCND2	894	MSKCC	GRCh37	12	4387998	4387998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	165	445	0	ENST00000261254.3:c.484C>T	p.His162Tyr	p.H162Y	ENST00000261254	NM_001759.3	162	Cac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	80	373	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0027830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	88	482	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
AXL	558	MSKCC	GRCh37	19	41765567	41765567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	94	507	1	ENST00000301178.4:c.2443G>A	p.Glu815Lys	p.E815K	ENST00000301178	NM_021913.4	815	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	279	579	0	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220717	1220717	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0027832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	178	441	0	ENST00000326873.7:c.734+1G>A		p.X245_splice	ENST00000326873	NM_000455.4	245																																																																																
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0027832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	101	442	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602878	10602878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	304	638	1	ENST00000171111.5:c.700C>T	p.Arg234Trp	p.R234W	ENST00000171111	NM_203500.1	234	Cgg/Tgg																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233073	69233073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	60	240	0	ENST00000462284.1:c.938C>T	p.Ser313Leu	p.S313L	ENST00000462284	NM_002392.5	313	tCa/tTa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900314	3900314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	98	394	0	ENST00000262367.5:c.782C>T	p.Ala261Val	p.A261V	ENST00000262367	NM_004380.2	261	gCa/gTa																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18277045	18277045	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	101	487	0	ENST00000222254.8:c.1492C>G	p.Gln498Glu	p.Q498E	ENST00000222254	NM_005027.3	498	Caa/Gaa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31472312	31472312	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	79	415	0	ENST00000344624.3:c.2099A>G	p.His700Arg	p.H700R	ENST00000344624		700	cAc/cGc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685294	86685294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	63	160	0	ENST00000274376.6:c.3010G>T	p.Ala1004Ser	p.A1004S	ENST00000274376	NM_002890.2	1004	Gct/Tct																																																																															
CDK6	1021	MSKCC	GRCh37	7	92462508	92462508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	337	400	0	ENST00000265734.4:c.130C>A	p.Arg44Ser	p.R44S	ENST00000265734	NM_001259.6	44	Cgc/Agc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528742	8528742	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1061345		P-0027832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	123	290	0	ENST00000356435.5:c.390G>T	p.Met130Ile	p.M130I	ENST00000356435		130	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	130	587	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420272	88420272	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	107	515	1	ENST00000360948.2:c.2414G>T	p.Gly805Val	p.G805V	ENST00000360948	NM_001012338.2	805	gGg/gTg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846267	156846267	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	126	589	0	ENST00000524377.1:c.1708C>A	p.Gln570Lys	p.Q570K	ENST00000524377	NM_002529.3	570	Cag/Aag																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175795	176175795	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	32	380	0	ENST00000367669.3:c.320G>T	p.Gly107Val	p.G107V	ENST00000367669	NM_022457.5	107	gGc/gTc																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518341	204518341	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	30	500	0	ENST00000367182.3:c.1004C>G	p.Ser335Ter	p.S335*	ENST00000367182	NM_001278516.1	335	tCa/tGa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936170	71936170	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	17	291	0	ENST00000298229.2:c.142G>C	p.Asp48His	p.D48H	ENST00000298229	NM_001567.3	48	Gac/Cac																																																																															
EED	8726	MSKCC	GRCh37	11	85979551	85979551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	124	552	0	ENST00000263360.6:c.914A>G	p.His305Arg	p.H305R	ENST00000263360	NM_003797.3	305	cAt/cGt																																																																															
POLE	5426	MSKCC	GRCh37	12	133201517	133201517	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	21	634	0	ENST00000320574.5:c.6721G>C	p.Asp2241His	p.D2241H	ENST00000320574	NM_006231.2	2241	Gac/Cac																																																																															
MGA	23269	MSKCC	GRCh37	15	42053967	42053967	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	90	450	0	ENST00000219905.7:c.7429C>T	p.Gln2477Ter	p.Q2477*	ENST00000219905	NM_001164273.1	2477	Cag/Tag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900860	3900860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	174	513	0	ENST00000262367.5:c.236G>T	p.Gly79Val	p.G79V	ENST00000262367	NM_004380.2	79	gGc/gTc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641722	23641722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	166	508	1	ENST00000261584.4:c.1753G>A	p.Asp585Asn	p.D585N	ENST00000261584	NM_024675.3	585	Gat/Aat																																																																															
CBFB	865	MSKCC	GRCh37	16	67132656	67132656	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	182	607	0	ENST00000412916.2:c.539G>T	p.Gly180Val	p.G180V	ENST00000412916		180	gGt/gTt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59878810	59878810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	73	328	0	ENST00000259008.2:c.944G>C	p.Gly315Ala	p.G315A	ENST00000259008	NM_032043.2	315	gGa/gCa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2194536	2194536	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	54	482	0	ENST00000398665.3:c.611A>T	p.Lys204Met	p.K204M	ENST00000398665	NM_032482.2	204	aAg/aTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17949122	17949122	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	140	691	0	ENST00000458235.1:c.1519C>A	p.Gln507Lys	p.Q507K	ENST00000458235	NM_000215.3	507	Cag/Aag																																																																															
CRKL	1399	MSKCC	GRCh37	22	21272281	21272281	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	78	380	0	ENST00000354336.3:c.59C>G	p.Ser20Cys	p.S20C	ENST00000354336	NM_005207.3	20	tCt/tGt																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73110172	73110172	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	84	591	0	ENST00000356692.5:c.382-2A>C		p.X128_splice	ENST00000356692		128																																																																																
HIST1H3F	8968	MSKCC	GRCh37	6	26250661	26250661	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	106	500	0	ENST00000446824.2:c.173C>A	p.Ser58Ter	p.S58*	ENST00000446824	NM_021018.2	58	tCg/tAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28929495		P-0027849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	142	621	0	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0027849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	12	401	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0027849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	125	530	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274189	10274189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	158	387	1	ENST00000330684.3:c.80C>T	p.Ala27Val	p.A27V	ENST00000330684	NM_001134407.1	27	gCg/gTg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843749	156843749	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	586	722	1	ENST00000524377.1:c.1175C>T	p.Pro392Leu	p.P392L	ENST00000524377	NM_002529.3	392	cCt/cTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144121	11144121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	245	627	1	ENST00000344626.4:c.3702C>A	p.Phe1234Leu	p.F1234L	ENST00000344626	NM_003072.3	1234	ttC/ttA																																																																															
SETD2	29072	MSKCC	GRCh37	3	47205366	47205366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	165	361	0	ENST00000409792.3:c.49G>C	p.Asp17His	p.D17H	ENST00000409792	NM_014159.6	17	Gac/Cac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0027854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	65	536	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0027854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	180	603	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0027854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	100	511	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	91	298	0	ENST00000281708.4:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000281708	NM_033632.3	545	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0027854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	204	529	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468282	50468282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	84	528	0	ENST00000331340.3:c.1517C>T	p.Ser506Leu	p.S506L	ENST00000331340	NM_006060.4	506	tCg/tTg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117687289	117687289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	91	406	0	ENST00000368508.3:c.2762C>A	p.Ala921Asp	p.A921D	ENST00000368508	NM_002944.2	921	gCc/gAc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739470	145739470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	92	559	0	ENST00000428558.2:c.1900G>A	p.Val634Met	p.V634M	ENST00000428558	NM_004260.3	634	Gtg/Atg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034427	47034427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	319	289	1	ENST00000329236.7:c.281G>A	p.Arg94Gln	p.R94Q	ENST00000329236	NM_001204466.1	94	cGg/cAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	189	564	2	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39584352	39584352	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	104	338	2	ENST00000262039.4:c.1017G>T	p.Trp339Cys	p.W339C	ENST00000262039	NM_002647.2	339	tgG/tgT																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519963		P-0027855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	151	394	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610162	10610162	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	219	654	0	ENST00000171111.5:c.548A>G	p.Asn183Ser	p.N183S	ENST00000171111	NM_203500.1	183	aAt/aGt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52597433	52597433	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	134	543	0	ENST00000394830.3:c.3877G>T	p.Glu1293Ter	p.E1293*	ENST00000394830	NM_018313.4	1293	Gag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538867	187538867	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	98	220	0	ENST00000441802.2:c.8873T>C	p.Ile2958Thr	p.I2958T	ENST00000441802	NM_005245.3	2958	aTa/aCa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528776	8528776	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	87	310	0	ENST00000356435.5:c.356A>T	p.Asp119Val	p.D119V	ENST00000356435		119	gAt/gTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48955563	48955600	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCTTGCATGGCTCTCAGTAAGTAGCTAAATAATTGAA	CCCTTGCATGGCTCTCAGTAAGTAGCTAAATAATTGAA	-			P-0027855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	98	472	0	ENST00000267163.4:c.1679_1695+21del		p.X560_splice	ENST00000267163	NM_000321.2	560																																																																																
PIK3CD	5293	MSKCC	GRCh37	1	9776535	9776535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	108	815	0	ENST00000377346.4:c.638C>T	p.Pro213Leu	p.P213L	ENST00000377346	NM_005026.3	213	cCg/cTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257572	16257572	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	102	702	0	ENST00000375759.3:c.4837A>G	p.Thr1613Ala	p.T1613A	ENST00000375759	NM_015001.2	1613	Aca/Gca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	15	86	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099480	27099480	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	70	384	0	ENST00000324856.7:c.3715+2T>C		p.X1239_splice	ENST00000324856	NM_006015.4	1239																																																																																
MPL	4352	MSKCC	GRCh37	1	43817931	43817931	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3820551		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	96	670	1	ENST00000372470.3:c.1610G>A	p.Arg537Gln	p.R537Q	ENST00000372470	NM_005373.2	537	cGg/cAg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797230	45797230	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	71	571	0	ENST00000372115.3:c.1145-2A>G		p.X382_splice	ENST00000372115	NM_001048171.1	382																																																																																
MUTYH	4595	MSKCC	GRCh37	1	45797710	45797710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	99	736	2	ENST00000372115.3:c.940G>A	p.Asp314Asn	p.D314N	ENST00000372115	NM_001048171.1	314	Gac/Aac																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743505	46743507	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	58	551	0	ENST00000371975.4:c.1889_1891del	p.Lys630del	p.K630del	ENST00000371975	NM_003579.3	629	gAGAag/gag																																																																															
SDHC	6391	MSKCC	GRCh37	1	161326487	161326487	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	81	569	0	ENST00000367975.2:c.262T>C	p.Ser88Pro	p.S88P	ENST00000367975	NM_003001.3	88	Tcg/Ccg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88659789	88659789	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	174	566	2	ENST00000372037.3:c.441delT	p.Phe147LeufsTer18	p.F147Lfs*18	ENST00000372037	NM_004329.2	146	Ttt/tt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742865	17742865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	73	625	3	ENST00000250003.3:c.773G>A	p.Arg258His	p.R258H	ENST00000250003	NM_002478.4	258	cGc/cAc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577137	64577137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	118	741	1	ENST00000337652.1:c.445G>A	p.Gly149Ser	p.G149S	ENST00000337652	NM_130803.2	149	Ggt/Agt																																																																															
PGR	5241	MSKCC	GRCh37	11	100999479	100999479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	70	810	0	ENST00000325455.5:c.323G>T	p.Ser108Ile	p.S108I	ENST00000325455	NM_001202474.3	108	aGc/aTc																																																																															
ATM	472	MSKCC	GRCh37	11	108204662	108204664	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	30	455	0	ENST00000278616.4:c.7980_7982del	p.Glu2660del	p.E2660del	ENST00000278616	NM_000051.3	2659	ttAGAa/tta																																																																															
KDM5A	5927	MSKCC	GRCh37	12	430192	430192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	47	503	2	ENST00000399788.2:c.2510C>T	p.Pro837Leu	p.P837L	ENST00000399788	NM_001042603.1	837	cCg/cTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244454	46244454	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	84	551	0	ENST00000334344.6:c.2552del	p.Pro851HisfsTer4	p.P851Hfs*4	ENST00000334344	NM_152641.2	850	Ccc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416545	49416545	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	89	604	0	ENST00000301067.7:c.16166G>T	p.Arg5389Leu	p.R5389L	ENST00000301067	NM_003482.3	5389	cGg/cTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	111	821	5	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856064	111856064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	54	337	0	ENST00000341259.2:c.115C>T	p.Arg39Trp	p.R39W	ENST00000341259	NM_005475.2	39	Cgg/Tgg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	78	675	9	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
POLE	5426	MSKCC	GRCh37	12	133219860	133219860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	92	661	0	ENST00000320574.5:c.4501G>A	p.Gly1501Arg	p.G1501R	ENST00000320574	NM_006231.2	1501	Ggg/Agg																																																																															
POLE	5426	MSKCC	GRCh37	12	133235942	133235942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	85	567	0	ENST00000320574.5:c.3214G>A	p.Ala1072Thr	p.A1072T	ENST00000320574	NM_006231.2	1072	Gca/Aca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914860	32914860	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	83	508	0	ENST00000380152.3:c.6368A>G	p.Glu2123Gly	p.E2123G	ENST00000380152		2123	gAa/gGa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066895	30066895	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	49	611	0	ENST00000331968.5:c.2236A>G	p.Thr746Ala	p.T746A	ENST00000331968	NM_002742.2	746	Acc/Gcc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38591743	38591743	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	66	411	0	ENST00000299084.4:c.205del	p.Met69TrpfsTer52	p.M69Wfs*52	ENST00000299084	NM_152594.2	68	Aaa/aa																																																																															
MGA	23269	MSKCC	GRCh37	15	41989087	41989087	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	92	771	0	ENST00000219905.7:c.1879C>T	p.Arg627Ter	p.R627*	ENST00000219905	NM_001164273.1	627	Cga/Tga																																																																															
B2M	567	MSKCC	GRCh37	15	45007675	45007675	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	67	474	0	ENST00000558401.1:c.122A>T	p.Asn41Ile	p.N41I	ENST00000558401	NM_004048.2	41	aAt/aTt																																																																															
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	89	563	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434566	99434566	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773552392		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	74	500	0	ENST00000268035.6:c.653C>T	p.Thr218Met	p.T218M	ENST00000268035	NM_000875.3	218	aCg/aTg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348211	348211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	112	687	1	ENST00000262320.3:c.1295del	p.Pro432GlnfsTer48	p.P432Qfs*48	ENST00000262320	NM_003502.3	432	cCa/ca																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640044	3640044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	132	878	0	ENST00000294008.3:c.3595G>A	p.Ala1199Thr	p.A1199T	ENST00000294008	NM_032444.2	1199	Gca/Aca																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786767	3786767	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	65	583	0	ENST00000262367.5:c.4444T>C	p.Tyr1482His	p.Y1482H	ENST00000262367	NM_004380.2	1482	Tac/Cac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	56	463	2	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934825	9934825	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	95	707	0	ENST00000330684.3:c.1465G>T	p.Val489Phe	p.V489F	ENST00000330684	NM_001134407.1	489	Gtt/Ttt																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14020559	14020559	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	80	638	0	ENST00000311895.7:c.530A>G	p.His177Arg	p.H177R	ENST00000311895	NM_005236.2	177	cAt/cGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831936	72831936	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181722888		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	108	868	3	ENST00000268489.5:c.4645G>A	p.Val1549Ile	p.V1549I	ENST00000268489	NM_006885.3	1549	Gtc/Atc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	33	307	0	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81914559	81914559	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	61	488	0	ENST00000359376.3:c.692+1G>A		p.X231_splice	ENST00000359376	NM_002661.3	231																																																																																
ANKRD11	29123	MSKCC	GRCh37	16	89346433	89346433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	71	709	0	ENST00000301030.4:c.6517G>A	p.Val2173Ile	p.V2173I	ENST00000301030	NM_001256183.1	2173	Gtc/Atc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346961	89346961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	52	377	1	ENST00000301030.4:c.5989G>A	p.Ala1997Thr	p.A1997T	ENST00000301030	NM_001256183.1	1997	Gcg/Acg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15964937	15964937	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	103	649	0	ENST00000268712.3:c.5659T>G	p.Phe1887Val	p.F1887V	ENST00000268712	NM_006311.3	1887	Ttt/Gtt																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	68	496	3	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	49	362	0	ENST00000447079.4:c.4382delG	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41219706	41219706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	85	471	0	ENST00000357654.3:c.4993G>A	p.Val1665Met	p.V1665M	ENST00000357654	NM_007294.3	1665	Gtg/Atg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	179	600	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
CD79B	974	MSKCC	GRCh37	17	62007580	62007580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	113	701	3	ENST00000392795.3:c.287G>A	p.Arg96His	p.R96H	ENST00000392795	NM_001039933.1	96	cGc/cAc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368208	45368208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	64	413	0	ENST00000262160.6:c.1394G>A	p.Ser465Asn	p.S465N	ENST00000262160	NM_005901.5	465	aGc/aAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573505	48573506	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	44	421	0	ENST00000342988.3:c.94_95delAG	p.Ser32Ter	p.S32*	ENST00000342988	NM_005359.5	30	gGA/g																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604668	48604668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	52	457	1	ENST00000342988.3:c.1490G>A	p.Arg497His	p.R497H	ENST00000342988	NM_005359.5	497	cGc/cAc																																																																															
BCL2	596	MSKCC	GRCh37	18	60985439	60985439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	100	741	1	ENST00000333681.4:c.461G>A	p.Gly154Asp	p.G154D	ENST00000333681		154	gGt/gAt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1627410	1627410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	107	769	0	ENST00000344749.5:c.314G>A	p.Arg105Gln	p.R105Q	ENST00000344749	NM_001136139.2	105	cGg/cAg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610153	10610153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	123	753	1	ENST00000171111.5:c.557G>A	p.Gly186Asp	p.G186D	ENST00000171111	NM_203500.1	186	gGc/gAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145789	11145789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	85	636	0	ENST00000344626.4:c.4151C>T	p.Thr1384Met	p.T1384M	ENST00000344626	NM_003072.3	1384	aCg/aTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272513	15272513	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	70	576	0	ENST00000263388.2:c.5926del	p.Leu1976TyrfsTer36	p.L1976Yfs*36	ENST00000263388	NM_000435.2	1976	Cta/ta																																																																															
UPF1	5976	MSKCC	GRCh37	19	18966819	18966819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	108	796	0	ENST00000262803.5:c.1630C>T	p.Leu544Phe	p.L544F	ENST00000262803	NM_002911.3	544	Ctc/Ttc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976541	18976541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	25	735	1	ENST00000262803.5:c.3191C>A	p.Pro1064His	p.P1064H	ENST00000262803	NM_002911.3	1064	cCt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	282	846	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224135	36224135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	68	570	0	ENST00000222270.7:c.6685C>A	p.Pro2229Thr	p.P2229T	ENST00000222270	NM_014727.1	2229	Ccc/Acc																																																																															
ERF	2077	MSKCC	GRCh37	19	42752873	42752873	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	88	816	0	ENST00000222329.4:c.1391delC	p.Pro464LeufsTer67	p.P464Lfs*67	ENST00000222329	NM_006494.2	464	cCt/ct																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731488	47731488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	12	60	0	ENST00000449228.1:c.304C>T	p.Arg102Cys	p.R102C	ENST00000449228	NM_001127240.2	102	Cgt/Tgt																																																																															
BBC3	27113	MSKCC	GRCh37	19	47735818	47735818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	111	718	0	ENST00000449228.1:c.42G>T	p.Gln14His	p.Q14H	ENST00000449228	NM_001127240.2	14	caG/caT																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905061	50905061	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	207	565	0	ENST00000440232.2:c.347delC	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	115	Ccc/cc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906475	50906475	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	83	683	0	ENST00000440232.2:c.1136A>C	p.Gln379Pro	p.Q379P	ENST00000440232	NM_002691.3	379	cAg/cCg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	80	868	3	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966873	25966873	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	80	512	2	ENST00000435504.4:c.2333del	p.Pro778GlnfsTer21	p.P778Qfs*21	ENST00000435504		778	cCa/ca																																																																															
PMS1	5378	MSKCC	GRCh37	2	190682742	190682742	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	42	340	0	ENST00000441310.2:c.419-1G>T		p.X140_splice	ENST00000441310	NM_000534.4	140																																																																																
CASP8	841	MSKCC	GRCh37	2	202150030	202150030	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	97	673	3	ENST00000358485.4:c.1471C>T	p.Arg491Ter	p.R491*	ENST00000358485	NM_001080125.1	491	Cga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251685	212251685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	53	392	0	ENST00000342788.4:c.3374C>T	p.Thr1125Ile	p.T1125I	ENST00000342788	NM_005235.2	1125	aCc/aTc																																																																															
BARD1	580	MSKCC	GRCh37	2	215645527	215645527	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	88	657	0	ENST00000260947.4:c.1071A>G	p.Ile357Met	p.I357M	ENST00000260947	NM_000465.2	357	atA/atG																																																																															
INHA	3623	MSKCC	GRCh37	2	220439569	220439569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	88	603	1	ENST00000243786.2:c.422G>A	p.Gly141Asp	p.G141D	ENST00000243786	NM_002191.3	141	gGc/gAc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538380	9538380	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	69	372	0	ENST00000353224.5:c.1618A>C	p.Met540Leu	p.M540L	ENST00000353224	NM_177990.2	540	Atg/Ctg																																																																															
AURKA	6790	MSKCC	GRCh37	20	54958198	54958198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	59	589	0	ENST00000312783.6:c.409C>T	p.Arg137Cys	p.R137C	ENST00000312783	NM_198436.1	137	Cgc/Tgc																																																																															
EP300	2033	MSKCC	GRCh37	22	41564765	41564765	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	94	683	2	ENST00000263253.7:c.4066C>T	p.Arg1356Ter	p.R1356*	ENST00000263253	NM_001429.3	1356	Cga/Tga																																																																															
EP300	2033	MSKCC	GRCh37	22	41566478	41566478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	98	620	0	ENST00000263253.7:c.4355C>T	p.Pro1452Leu	p.P1452L	ENST00000263253	NM_001429.3	1452	cCt/cTt																																																																															
EP300	2033	MSKCC	GRCh37	22	41574679	41574679	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	208	743	2	ENST00000263253.7:c.6970delC	p.His2324ThrfsTer29	p.H2324Tfs*29	ENST00000263253	NM_001429.3	2322	Ccc/cc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713565	30713565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	80	542	0	ENST00000359013.4:c.965T>C	p.Ile322Thr	p.I322T	ENST00000359013	NM_001024847.2	322	aTc/aCc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070349	37070349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1220422495		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	72	644	1	ENST00000231790.2:c.1489del	p.Arg497GlyfsTer11	p.R497Gfs*11	ENST00000231790	NM_000249.3	495	aCc/ac																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436841	52436841	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	70	718	0	ENST00000460680.1:c.1937A>G	p.Tyr646Cys	p.Y646C	ENST00000460680	NM_004656.3	646	tAt/tGt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52613121	52613121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	85	664	2	ENST00000394830.3:c.3407G>A	p.Gly1136Asp	p.G1136D	ENST00000394830	NM_018313.4	1136	gGc/gAc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027093	71027093	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200629338		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	81	547	1	ENST00000318789.4:c.1234G>A	p.Ala412Thr	p.A412T	ENST00000318789	NM_032682.5	412	Gcc/Acc																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149290678	149290678	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	105	705	0	ENST00000360632.3:c.541T>C	p.Ser181Pro	p.S181P	ENST00000360632	NM_015472.4	181	Tcc/Ccc																																																																															
BCL6	604	MSKCC	GRCh37	3	187440319	187440319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	99	609	3	ENST00000232014.4:c.2048C>T	p.Ala683Val	p.A683V	ENST00000232014	NM_001130845.1	683	gCc/gTc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808398	1808398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	88	946	0	ENST00000260795.2:c.2156G>A	p.Cys719Tyr	p.C719Y	ENST00000260795		719	tGc/tAc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1932444	1932444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	111	663	1	ENST00000382891.5:c.1502G>A	p.Arg501His	p.R501H	ENST00000382891	NM_133335.3	501	cGc/cAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361115	66361115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	48	367	0	ENST00000273854.3:c.1057G>A	p.Ala353Thr	p.A353T	ENST00000273854	NM_004439.5	353	Gca/Aca																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99823066	99823066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	86	448	0	ENST00000280892.6:c.146C>T	p.Ala49Val	p.A49V	ENST00000280892	NM_001130678.1	49	gCt/gTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	84	611	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871206	35871206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	78	506	0	ENST00000303115.3:c.428C>T	p.Ala143Val	p.A143V	ENST00000303115	NM_002185.3	143	gCc/gTc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	38	360	0	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589138	67589138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	48	332	0	ENST00000274335.5:c.1126G>A	p.Gly376Arg	p.G376R	ENST00000274335		376	Gga/Aga																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	192	795	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672839	86672840	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	59	399	0	ENST00000274376.6:c.2329_2330del	p.Glu777AsnfsTer6	p.E777Nfs*6	ENST00000274376	NM_002890.2	776	AGa/a																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460583	149460583	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	67	627	0	ENST00000286301.3:c.54G>T	p.Gln18His	p.Q18H	ENST00000286301	NM_005211.3	18	caG/caT																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500480	149500480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	91	745	1	ENST00000261799.4:c.2557C>T	p.Arg853Trp	p.R853W	ENST00000261799	NM_002609.3	853	Cgg/Tgg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180052992	180052992	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	89	811	0	ENST00000261937.6:c.1298G>T	p.Ser433Ile	p.S433I	ENST00000261937	NM_182925.4	433	aGc/aTc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323240	31323240	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	81	563	0	ENST00000412585.2:c.749A>G	p.Gln250Arg	p.Q250R	ENST00000412585	NM_005514.6	250	cAg/cGg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32181563	32181563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	92	812	0	ENST00000375023.3:c.2222G>T	p.Gly741Val	p.G741V	ENST00000375023	NM_004557.3	741	gGc/gTc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803446	32803446	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	129	719	0	ENST00000374899.4:c.713T>G	p.Leu238Arg	p.L238R	ENST00000374899	NM_018833.2	238	cTc/cGc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805537	32805539	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	109	794	0	ENST00000374899.4:c.472_474del	p.Phe158del	p.F158del	ENST00000374899	NM_018833.2	158	TTC/-																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	183	692	0	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289197	33289197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	84	534	0	ENST00000374542.5:c.355C>T	p.Arg119Trp	p.R119W	ENST00000374542	NM_001141970.1	119	Cgg/Tgg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152415703	152415703	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	61	518	0	ENST00000206249.3:c.1553G>T	p.Ser518Ile	p.S518I	ENST00000206249	NM_000125.3	518	aGt/aTt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468306	50468306	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	89	541	0	ENST00000331340.3:c.1541A>G	p.His514Arg	p.H514R	ENST00000331340	NM_006060.4	514	cAc/cGc																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	88	661	2	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346220	152346220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	96	701	7	ENST00000359321.1:c.350del	p.Leu117TrpfsTer17	p.L117Wfs*17	ENST00000359321	NM_005431.1	117	tTg/tg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	54	413	0	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	73	757	6	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	55	609	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98242284	98242284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	81	702	0	ENST00000331920.6:c.1034G>A	p.Gly345Asp	p.G345D	ENST00000331920	NM_000264.3	345	gGc/gAc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900238	101900238	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201021249		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	56	498	0	ENST00000374994.4:c.672G>A	p.Trp224Ter	p.W224*	ENST00000374994	NM_004612.2	224	tgG/tgA																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139418325	139418325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	83	841	2	ENST00000277541.6:c.247G>A	p.Ala83Thr	p.A83T	ENST00000277541	NM_017617.3	83	Gca/Aca																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932953	39932953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	59	581	0	ENST00000378444.4:c.1646G>A	p.Gly549Asp	p.G549D	ENST00000378444	NM_001123385.1	549	gGc/gAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030503	47030503	+	intron_variant	Intron	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	90	726	1	ENST00000329236.7:c.201+1606C>T		p.*67*	ENST00000329236	NM_001204466.1	67																																																																																
RBM10	8241	MSKCC	GRCh37	X	47038535	47038535	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	62	759	1	ENST00000329236.7:c.466T>C	p.Cys156Arg	p.C156R	ENST00000329236	NM_001204466.1	156	Tgc/Cgc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	75	675	2	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222308	53222309	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	100	793	0	ENST00000375401.3:c.4523dup	p.Ala1509CysfsTer75	p.A1509Cfs*75	ENST00000375401	NM_004187.3	1508	cct/ccCt																																																																															
AR	367	MSKCC	GRCh37	X	66766454	66766454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	59	373	0	ENST00000374690.3:c.1466G>A	p.Gly489Glu	p.G489E	ENST00000374690	NM_000044.3	489	gGg/gAg																																																																															
MED12	9968	MSKCC	GRCh37	X	70356450	70356450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	88	829	1	ENST00000374080.3:c.5345G>A	p.Arg1782His	p.R1782H	ENST00000374080		1782	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380260	25380265	+	protein_altering_variant	In_Frame_Ins	INS	TGCACT	TGCACT	GTACTGGTCAAG			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	79	618	0	ENST00000256078.4:c.193_198delinsCTTGACCAGTAC	p.Ser65_Ala66delinsLeuAspGlnTyr	p.S65_A66delinsLDQY	ENST00000256078	NM_033360.2	65	AGTGCA/CTTGACCAGTAC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0027991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	82	742	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38949877	38949877	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	72	411	0	ENST00000357387.3:c.4073T>A	p.Val1358Glu	p.V1358E	ENST00000357387	NM_152756.3	1358	gTg/gAg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33286824	33286824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	48	564	0	ENST00000374542.5:c.2113C>T	p.Arg705Trp	p.R705W	ENST00000374542	NM_001141970.1	705	Cgg/Tgg																																																																															
SUFU	51684	MSKCC	GRCh37	10	104309776	104309776	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202247756		P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			644	210	823	0	ENST00000369902.3:c.367C>T	p.Arg123Cys	p.R123C	ENST00000369902	NM_016169.3	123	Cgt/Tgt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118708	115118708	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			535	150	596	2	ENST00000257566.3:c.633C>A	p.Asn211Lys	p.N211K	ENST00000257566	NM_016569.3	211	aaC/aaA																																																																															
FLT1	2321	MSKCC	GRCh37	13	28880885	28880885	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			547	56	587	0	ENST00000282397.4:c.3745C>G	p.Leu1249Val	p.L1249V	ENST00000282397	NM_002019.4	1249	Ctg/Gtg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28959097	28959097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			490	136	507	0	ENST00000282397.4:c.2041G>C	p.Asp681His	p.D681H	ENST00000282397	NM_002019.4	681	Gac/Cac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32893389	32893389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			714	176	605	0	ENST00000380152.3:c.243C>G	p.Phe81Leu	p.F81L	ENST00000380152		81	ttC/ttG																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			258	369	519	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68842716	68842716	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	156	740	1	ENST00000261769.5:c.652G>T	p.Glu218Ter	p.E218*	ENST00000261769	NM_004360.3	218	Gag/Tag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984731	11984731	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			134	69	346	0	ENST00000353533.5:c.277C>T	p.Gln93Ter	p.Q93*	ENST00000353533	NM_003010.3	93	Caa/Taa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029511	16029511	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			453	25	536	0	ENST00000268712.3:c.1519C>T	p.Arg507Ter	p.R507*	ENST00000268712	NM_006311.3	507	Cga/Tga																																																																															
CUL3	8452	MSKCC	GRCh37	2	225360568	225360568	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			153	66	258	0	ENST00000264414.4:c.1823G>C	p.Arg608Thr	p.R608T	ENST00000264414	NM_003590.4	608	aGa/aCa																																																																															
TET2	54790	MSKCC	GRCh37	4	106164748	106164748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			390	98	466	0	ENST00000380013.4:c.3616G>A	p.Glu1206Lys	p.E1206K	ENST00000380013	NM_001127208.2	1206	Gaa/Aaa																																																																															
TEK	7010	MSKCC	GRCh37	9	27157837	27157837	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			413	30	521	0	ENST00000380036.4:c.61G>C	p.Glu21Gln	p.E21Q	ENST00000380036	NM_000459.3	21	Gaa/Caa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400002	139400002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			453	104	853	2	ENST00000277541.6:c.4346G>A	p.Cys1449Tyr	p.C1449Y	ENST00000277541	NM_017617.3	1449	tGc/tAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	84	700	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0027694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	104	657	1	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
RNF43	54894	MSKCC	GRCh37	17	56440637	56440637	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0027694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	80	843	2	ENST00000407977.2:c.581G>A	p.Trp194Ter	p.W194*	ENST00000407977		194	tGg/tAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214831	36214831	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	78	1025	0	ENST00000222270.7:c.3257A>G	p.Tyr1086Cys	p.Y1086C	ENST00000222270	NM_014727.1	1086	tAt/tGt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056196	26056219	+	inframe_deletion	In_Frame_Del	DEL	GTTTTCTTAGCGCTCTTCTTCGGA	GTTTTCTTAGCGCTCTTCTTCGGA	-			P-0027694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	85	568	0	ENST00000343677.2:c.438_461del	p.Ser150_Lys157del	p.S150_K157del	ENST00000343677	NM_005319.3	146	acTCCGAAGAAGAGCGCTAAGAAAACa/aca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974723	21974738	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCTCCAGCAGCG	CCCGCCTCCAGCAGCG	-			P-0027694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	42	505	0	ENST00000304494.5:c.89_104delCGCTGCTGGAGGCGGG	p.Ala30GlyfsTer18	p.A30Gfs*18	ENST00000304494	NM_000077.4	30	gCGCTGCTGGAGGCGGGg/gg																																																																															
ABL1	25	MSKCC	GRCh37	9	133750272	133750272	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	52	697	1	ENST00000318560.5:c.1103A>G	p.Asn368Ser	p.N368S	ENST00000318560	NM_005157.4	368	aAc/aGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	56	512	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	132	525	0	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0027695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	54	202	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	62	474	1	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT																																																																															
ATRX	546	MSKCC	GRCh37	X	76875919	76875919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	75	591	0	ENST00000373344.5:c.5216G>A	p.Arg1739Gln	p.R1739Q	ENST00000373344	NM_000489.3	1739	cGa/cAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088768	27088768	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	63	611	0	ENST00000324856.7:c.2377A>G	p.Met793Val	p.M793V	ENST00000324856	NM_006015.4	793	Atg/Gtg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720702	89720702	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	28	130	0	ENST00000371953.3:c.853G>T	p.Glu285Ter	p.E285*	ENST00000371953	NM_000314.4	285	Gaa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920404	114920404	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	69	496	0	ENST00000543371.1:c.1345G>C	p.Ala449Pro	p.A449P	ENST00000543371	NM_001198531.1	449	Gca/Cca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0027697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	168	439	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0027697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	181	390	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
GNAS	2778	MSKCC	GRCh37	20	57480483	57480483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	147	332	3	ENST00000371085.3:c.478C>T	p.Arg160Cys	p.R160C	ENST00000371085	NM_000516.4	160	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	90	219	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976744	2976744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	531	657	0	ENST00000396946.4:c.1268G>A	p.Arg423Gln	p.R423Q	ENST00000396946	NM_032415.4	423	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114799872	114799872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	270	509	0	ENST00000543371.1:c.539C>T	p.Pro180Leu	p.P180L	ENST00000543371	NM_001198531.1	180	cCg/cTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356239	66356239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	232	571	0	ENST00000273854.3:c.1258G>A	p.Gly420Ser	p.G420S	ENST00000273854	NM_004439.5	420	Ggc/Agc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480408	89480408	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	145	313	1	ENST00000336596.2:c.2245G>T	p.Ala749Ser	p.A749S	ENST00000336596	NM_005233.5	749	Gct/Tct																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243482	46243484	+	stop_gained	Nonsense_Mutation	ONP	ATC	ATC	TTT			P-0027697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	97	469	0	ENST00000334344.6:c.1835_1837delinsTTT	p.Tyr612_Gln613delinsPheTer	p.Y612_Q613delinsF*	ENST00000334344	NM_152641.2	612	tATCag/tTTTag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0027722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	311	573	7	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
RB1	5925	MSKCC	GRCh37	13	49030367	49030368	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	177	291	5	ENST00000267163.4:c.1848dupA	p.Gly617ArgfsTer36	p.G617Rfs*36	ENST00000267163	NM_000321.2	614	-/A																																																																															
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	177	346	4	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404576	8404576	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146844299		P-0027722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	110	225	4	ENST00000356435.5:c.4171G>A	p.Ala1391Thr	p.A1391T	ENST00000356435		1391	Gca/Aca																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729390	41729390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	266	424	4	ENST00000242208.4:c.1139G>A	p.Gly380Asp	p.G380D	ENST00000242208	NM_002192.2	380	gGc/gAc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870961	12870961	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	145	299	1	ENST00000228872.4:c.188A>T	p.Asp63Val	p.D63V	ENST00000228872	NM_004064.3	63	gAt/gTt																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7976111	7976111	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	296	513	9	ENST00000319144.4:c.2084T>C	p.Ile695Thr	p.I695T	ENST00000319144	NM_001139.2	695	aTt/aCt																																																																															
ERF	2077	MSKCC	GRCh37	19	42754493	42754493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	312	545	10	ENST00000222329.4:c.247C>T	p.Arg83Trp	p.R83W	ENST00000222329	NM_006494.2	83	Cgg/Tgg																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778103	27778104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	255	440	4	ENST00000369163.2:c.254dup	p.Gln86ProfsTer21	p.Q86Pfs*21	ENST00000369163	NM_003536.2	84	-/T																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476301	88476301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	78	490	0	ENST00000360948.2:c.1831G>A	p.Asp611Asn	p.D611N	ENST00000360948	NM_001012338.2	611	Gac/Aac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980872	40980872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	122	337	0	ENST00000373198.4:c.1614G>C	p.Gln538His	p.Q538H	ENST00000373198	NM_133170.3	538	caG/caC																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246670438	246670438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	60	348	0	ENST00000388985.4:c.82G>A	p.Glu28Lys	p.E28K	ENST00000388985		28	Gag/Aag																																																																															
RAD50	10111	MSKCC	GRCh37	5	131953930	131953930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	32	294	0	ENST00000265335.6:c.3333G>A	p.Met1111Ile	p.M1111I	ENST00000265335		1111	atG/atA																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168830	56168830	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0027725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	20	253	0	ENST00000399503.3:c.1684C>T	p.Gln562Ter	p.Q562*	ENST00000399503	NM_005921.1	562	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0027728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	100	298	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0027728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	132	381	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457303	67457303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	154	373	1	ENST00000327367.4:c.277C>T	p.Arg93Ter	p.R93*	ENST00000327367	NM_005902.3	93	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108143306	108143306	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	106	294	0	ENST00000278616.4:c.3125T>C	p.Leu1042Pro	p.L1042P	ENST00000278616	NM_000051.3	1042	cTa/cCa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265982	41266276	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAA	AATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAA	-			P-0027728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	20	68	0	ENST00000349496.5:c.14-34_241+33del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	348	518	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	308	581	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	176	423	0	ENST00000257430.4:c.4393_4394dupAG	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	200	438	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	219	424	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	308	576	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
AR	367	MSKCC	GRCh37	X	66765159	66765188	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	-			P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	43	270	0	ENST00000374690.3:c.210_239delGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	p.Gln71_Gln80del	p.Q71_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468357	89468357	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	150	197	0	ENST00000336596.2:c.1891G>A	p.Glu631Lys	p.E631K	ENST00000336596	NM_005233.5	631	Gaa/Aaa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201980416	201980417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGAGG			P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	294	680	3	ENST00000359651.3:c.154_158dup	p.Thr54ArgfsTer103	p.T54Rfs*103	ENST00000359651		51	ttg/ttGGAGGg																																																																															
PARP1	142	MSKCC	GRCh37	1	226578228	226578228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	312	552	0	ENST00000366794.5:c.500G>A	p.Arg167Lys	p.R167K	ENST00000366794	NM_001618.3	167	aGg/aAg																																																																															
KIT	3815	MSKCC	GRCh37	4	55524201	55524201	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	269	489	1	ENST00000288135.5:c.20C>A	p.Ala7Asp	p.A7D	ENST00000288135	NM_000222.2	7	gCc/gAc																																																																															
KIT	3815	MSKCC	GRCh37	4	55593598	55593598	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	170	471	0	ENST00000288135.5:c.1664T>A	p.Val555Glu	p.V555E	ENST00000288135	NM_000222.2	555	gTa/gAa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528267	157528267	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	274	586	2	ENST00000346085.5:c.5992G>C	p.Glu1998Gln	p.E1998Q	ENST00000346085	NM_020732.3	1998	Gag/Cag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411119	63411119	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	229	518	1	ENST00000330258.3:c.2048C>A	p.Ser683Ter	p.S683*	ENST00000330258	NM_152424.3	683	tCa/tAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0027576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	14	586	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0027576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	28	903	1	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760711	59760711	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	23	822	0	ENST00000259008.2:c.3696G>C	p.Lys1232Asn	p.K1232N	ENST00000259008	NM_032043.2	1232	aaG/aaC																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213917	66213917	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	21	453	0	ENST00000273854.3:c.2513del	p.Gly838GlufsTer13	p.G838Efs*13	ENST00000273854	NM_004439.5	838	gGa/ga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413040	63413040	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	33	474	0	ENST00000330258.3:c.127G>T	p.Glu43Ter	p.E43*	ENST00000330258	NM_152424.3	43	Gag/Tag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696642	47696642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	225	624	0	ENST00000347630.2:c.306C>G	p.Phe102Leu	p.F102L	ENST00000347630	NM_001007230.1	102	ttC/ttG																																																																															
MGA	23269	MSKCC	GRCh37	15	42041845	42041846	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	38	680	0	ENST00000219905.7:c.6041dup	p.Ala2015CysfsTer9	p.A2015Cfs*9	ENST00000219905	NM_001164273.1	2014	gct/gCct																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151864230	151864230	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0027711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	108	326	0	ENST00000262189.6:c.9750+1G>C		p.X3250_splice	ENST00000262189	NM_170606.2	3250																																																																																
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0027712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	328	837	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0027712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	405	654	1	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0027712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	138	287	1	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs149680468		P-0027712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	172	498	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	169	519	0	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT																																																																															
EP300	2033	MSKCC	GRCh37	22	41562637	41562637	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	164	464	0	ENST00000263253.7:c.3841C>T	p.Arg1281Ter	p.R1281*	ENST00000263253	NM_001429.3	1281	Cga/Tga																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2489788	2489788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	417	680	0	ENST00000355716.4:c.185G>A	p.Arg62His	p.R62H	ENST00000355716	NM_003820.2	62	cGt/cAt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180036938	180036938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	281	832	0	ENST00000261937.6:c.3774C>A	p.Phe1258Leu	p.F1258L	ENST00000261937	NM_182925.4	1258	ttC/ttA																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786705	3786705	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1282	262	880	0	ENST00000262367.5:c.4506G>C	p.Trp1502Cys	p.W1502C	ENST00000262367	NM_004380.2	1502	tgG/tgC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578385	7578386	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	321	686	1	ENST00000269305.4:c.544dup	p.Cys182LeufsTer4	p.C182Lfs*4	ENST00000269305	NM_001126112.2	182	tgc/tTgc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86681205	86681205	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0027713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	127	383	0	ENST00000274376.6:c.2846A>C	p.Lys949Thr	p.K949T	ENST00000274376	NM_002890.2	949	aAg/aCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	87	411	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0027737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	139	525	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112173847	112173848	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0027737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	77	299	0	ENST00000257430.4:c.2563_2564dup	p.Arg856AsnfsTer6	p.R856Nfs*6	ENST00000257430	NM_000038.5	852	-/GA																																																																															
MITF	4286	MSKCC	GRCh37	3	70014170	70014170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	71	523	1	ENST00000352241.4:c.1334C>T	p.Thr445Met	p.T445M	ENST00000352241	NM_198159.2	445	aCg/aTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099329	27099333	+	frameshift_variant	Frame_Shift_Del	DEL	ATGCC	ATGCC	-			P-0027737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	137	450	2	ENST00000324856.7:c.3566_3570del	p.Asp1189ValfsTer2	p.D1189Vfs*2	ENST00000324856	NM_006015.4	1189	gATGCC/g																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0027748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	103	284	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12043154	12043154	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0027748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	69	203	0	ENST00000353533.5:c.1041-2A>C		p.X347_splice	ENST00000353533	NM_003010.3	347																																																																																
RUNX1	861	MSKCC	GRCh37	21	36231849	36231850	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	142	492	1	ENST00000300305.3:c.534dup	p.Val179CysfsTer34	p.V179Cfs*34	ENST00000300305		178	-/T																																																																															
MED12	9968	MSKCC	GRCh37	X	70349243	70349243	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	87	549	0	ENST00000374080.3:c.3655G>C	p.Ala1219Pro	p.A1219P	ENST00000374080		1219	Gcc/Ccc																																																																															
RB1	5925	MSKCC	GRCh37	13	48953760	48953760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913302		P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	262	228	0	ENST00000267163.4:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000267163	NM_000321.2	455	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	315	512	0	ENST00000269305.4:c.560-2A>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
CDK12	51755	MSKCC	GRCh37	17	37619238	37619238	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	147	395	0	ENST00000447079.4:c.914A>G	p.Tyr305Cys	p.Y305C	ENST00000447079	NM_015083.1	305	tAt/tGt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012929	176012929	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	143	431	0	ENST00000367669.3:c.1447A>T	p.Lys483Ter	p.K483*	ENST00000367669	NM_022457.5	483	Aag/Tag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	443499	443499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	168	424	0	ENST00000399788.2:c.1398G>T	p.Met466Ile	p.M466I	ENST00000399788	NM_001042603.1	466	atG/atT																																																																															
LATS2	26524	MSKCC	GRCh37	13	21553911	21553911	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	425	441	0	ENST00000382592.4:c.2691G>C	p.Trp897Cys	p.W897C	ENST00000382592	NM_014572.2	897	tgG/tgC																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223343	2223343	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	304	562	0	ENST00000326181.6:c.955C>G	p.Leu319Val	p.L319V	ENST00000326181	NM_032271.2	319	Ctg/Gtg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56865840	56865840	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	110	365	0	ENST00000308159.5:c.1172A>G	p.Tyr391Cys	p.Y391C	ENST00000308159	NM_014669.4	391	tAc/tGc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58677834	58677834	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	354	611	1	ENST00000305921.3:c.59A>T	p.Tyr20Phe	p.Y20F	ENST00000305921	NM_003620.3	20	tAc/tTc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098975	178098975	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	176	214	0	ENST00000397062.3:c.70T>G	p.Trp24Gly	p.W24G	ENST00000397062	NM_006164.4	24	Tgg/Ggg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42838075	42838075	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	142	370	0	ENST00000398585.3:c.1584C>A	p.Asp528Glu	p.D528E	ENST00000398585	NM_001135099.1	528	gaC/gaA																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55131163	55131163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	351	578	0	ENST00000257290.5:c.706G>A	p.Ala236Thr	p.A236T	ENST00000257290	NM_006206.4	236	Gct/Act																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950528	38950528	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	139	367	0	ENST00000357387.3:c.3422T>G	p.Phe1141Cys	p.F1141C	ENST00000357387	NM_152756.3	1141	tTt/tGt																																																																															
SMO	6608	MSKCC	GRCh37	7	128829009	128829009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	43	66	0	ENST00000249373.3:c.17C>T	p.Pro6Leu	p.P6L	ENST00000249373	NM_005631.4	6	cCa/cTa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117878898	117878898	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	139	424	0	ENST00000297338.2:c.71A>T	p.Asp24Val	p.D24V	ENST00000297338	NM_006265.2	24	gAt/gTt																																																																															
ATRX	546	MSKCC	GRCh37	X	76949319	76949319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	158	432	0	ENST00000373344.5:c.478C>T	p.Arg160Cys	p.R160C	ENST00000373344	NM_000489.3	160	Cgc/Tgc																																																																															
RB1	5925	MSKCC	GRCh37	13	48954210	48954210	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	65	341	0	ENST00000267163.4:c.1411C>T	p.Gln471Ter	p.Q471*	ENST00000267163	NM_000321.2	471	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1200	157	653	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023153	27023153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	24	96	0	ENST00000324856.7:c.259G>A	p.Gly87Arg	p.G87R	ENST00000324856	NM_006015.4	87	Gga/Aga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445028	89445028	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0027676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	87	579	0	ENST00000336596.2:c.1348A>T	p.Arg450Ter	p.R450*	ENST00000336596	NM_005233.5	450	Aga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440534	49440534	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1637	215	836	0	ENST00000301067.7:c.4276G>C	p.Glu1426Gln	p.E1426Q	ENST00000301067	NM_003482.3	1426	Gag/Cag																																																																															
DIS3	22894	MSKCC	GRCh37	13	73336062	73336062	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0027676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	51	198	0	ENST00000377767.4:c.2341A>G	p.Arg781Gly	p.R781G	ENST00000377767	NM_014953.3	781	Aga/Gga																																																																															
STK11	6794	MSKCC	GRCh37	19	1207203	1207203	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0027676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	141	666	0	ENST00000326873.7:c.290+1G>C		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	18	532	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591115	67591123	+	inframe_deletion	In_Frame_Del	DEL	CTTATCCAG	CTTATCCAG	-			P-0027678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	59	332	0	ENST00000274335.5:c.1710_1718del	p.Ile571_Leu573del	p.I571_L573del	ENST00000274335		570	CTTATCCAG/-																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138473	11138473	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	180	461	2	ENST00000344626.4:c.3229C>T	p.Arg1077Ter	p.R1077*	ENST00000344626	NM_003072.3	1077	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431184	49431184	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	122	619	0	ENST00000301067.7:c.9955G>C	p.Gly3319Arg	p.G3319R	ENST00000301067	NM_003482.3	3319	Ggt/Cgt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041727	29041727	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	28	372	0	ENST00000282397.4:c.92A>G	p.Asp31Gly	p.D31G	ENST00000282397	NM_002019.4	31	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578503	7578504	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGGCAGG			P-0027678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	292	887	0	ENST00000269305.4:c.419_426dup	p.Val143ProfsTer30	p.V143Pfs*30	ENST00000269305	NM_001126112.2	142	-/CCTGCCCT																																																																															
BRCA1	672	MSKCC	GRCh37	17	41228518	41228518	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	420	604	0	ENST00000357654.3:c.4471C>G	p.Pro1491Ala	p.P1491A	ENST00000357654	NM_007294.3	1491	Cca/Gca																																																																															
CCNE1	898	MSKCC	GRCh37	19	30314635	30314635	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	128	531	0	ENST00000262643.3:c.1184C>A	p.Thr395Asn	p.T395N	ENST00000262643	NM_001238.2	395	aCc/aAc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24129358	24129358	+	start_lost	Translation_Start_Site	SNP	T	T	G			P-0027678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	107	404	0	ENST00000263121.7:c.2T>G	p.Met1?	p.M1?	ENST00000263121	NM_003073.3	1	aTg/aGg																																																																															
APC	324	MSKCC	GRCh37	5	112174868	112174898	+	protein_altering_variant	In_Frame_Del	DEL	CAGTCATTTTCATTCTCAAAGAGTTCATCTG	CAGTCATTTTCATTCTCAAAGAGTTCATCTG	ACTC			P-0027678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	55	264	1	ENST00000257430.4:c.3577_3607delinsACTC	p.Gln1193_Gly1203delinsThrArg	p.Q1193_G1203delinsTR	ENST00000257430	NM_000038.5	1193	CAGTCATTTTCATTCTCAAAGAGTTCATCTGga/ACTCga																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120594	94120594	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	57	380	0	ENST00000369303.4:c.457G>T	p.Glu153Ter	p.E153*	ENST00000369303	NM_004440.3	153	Gaa/Taa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034460	47034460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	80	712	0	ENST00000329236.7:c.314A>C	p.Gln105Pro	p.Q105P	ENST00000329236	NM_001204466.1	105	cAg/cCg																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0027680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	68	261	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	80	429	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1131691025		P-0027680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	226	489	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0027680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	165	351	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575090	48575090	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	95	393	0	ENST00000342988.3:c.284A>G	p.Tyr95Cys	p.Y95C	ENST00000342988	NM_005359.5	95	tAt/tGt																																																																															
SMO	6608	MSKCC	GRCh37	7	128829128	128829128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	62	64	0	ENST00000249373.3:c.136G>A	p.Gly46Arg	p.G46R	ENST00000249373	NM_005631.4	46	Ggg/Agg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223251	5223251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	139	742	0	ENST00000357368.4:c.2552G>A	p.Arg851His	p.R851H	ENST00000357368	NM_002850.3	851	cGc/cAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165024	47165024	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	51	380	1	ENST00000409792.3:c.1102C>T	p.Arg368Ter	p.R368*	ENST00000409792	NM_014159.6	368	Cga/Tga																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430390	181430390	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	148	784	0	ENST00000325404.1:c.245del	p.Leu82CysfsTer21	p.L82Cfs*21	ENST00000325404	NM_003106.3	81	cTt/ct																																																																															
KDR	3791	MSKCC	GRCh37	4	55953861	55953861	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	98	533	0	ENST00000263923.4:c.3575T>G	p.Leu1192Arg	p.L1192R	ENST00000263923	NM_002253.2	1192	cTc/cGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0027189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	15	490	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	32	766	0	ENST00000269305.4:c.841G>T	p.Asp281Tyr	p.D281Y	ENST00000269305	NM_001126112.2	281	Gac/Tac																																																																															
JUN	3725	MSKCC	GRCh37	1	59247911	59247912	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	152	695	0	ENST00000371222.2:c.831dup	p.Ala278ArgfsTer32	p.A278Rfs*32	ENST00000371222	NM_002228.3	277	-/C																																																																															
ELF3	1999	MSKCC	GRCh37	1	201980337	201980338	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	137	741	0	ENST00000359651.3:c.76dup	p.Leu26ProfsTer14	p.L26Pfs*14	ENST00000359651		25	acc/aCcc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984364	201984365	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	344	606	0	ENST00000359651.3:c.1030dup	p.Arg344ProfsTer127	p.R344Pfs*127	ENST00000359651		343	-/C																																																																															
TP53	7157	MSKCC	GRCh37	17	7574000	7574000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	368	576	0	ENST00000269305.4:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000269305	NM_001126112.2	343	Gag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29657313	29657313	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	246	456	1	ENST00000358273.4:c.5610-1G>T		p.X1870_splice	ENST00000358273	NM_001042492.2	1870																																																																																
NF1	4763	MSKCC	GRCh37	17	29483000	29483000	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	229	308	2	ENST00000358273.4:c.61-1G>T		p.X21_splice	ENST00000358273	NM_001042492.2	21																																																																																
NTRK1	4914	MSKCC	GRCh37	1	156846343	156846343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	299	575	0	ENST00000524377.1:c.1784G>A	p.Gly595Glu	p.G595E	ENST00000524377	NM_002529.3	595	gGg/gAg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162722964	162722964	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	271	502	0	ENST00000367921.3:c.162G>T	p.Glu54Asp	p.E54D	ENST00000367921	NM_006182.2	54	gaG/gaT																																																																															
AKT3	10000	MSKCC	GRCh37	1	243809322	243809322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	215	343	0	ENST00000263826.5:c.302C>A	p.Ala101Asp	p.A101D	ENST00000263826	NM_005465.4	101	gCt/gAt																																																																															
PGR	5241	MSKCC	GRCh37	11	100996861	100996861	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	336	527	0	ENST00000325455.5:c.1666C>G	p.Gln556Glu	p.Q556E	ENST00000325455	NM_001202474.3	556	Caa/Gaa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	443491	443491	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	127	446	0	ENST00000399788.2:c.1406C>A	p.Pro469Gln	p.P469Q	ENST00000399788	NM_001042603.1	469	cCg/cAg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	461394	461394	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	116	377	0	ENST00000399788.2:c.1126G>T	p.Asp376Tyr	p.D376Y	ENST00000399788	NM_001042603.1	376	Gat/Tat																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111886054	111886054	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	253	456	0	ENST00000341259.2:c.1676C>A	p.Ser559Ter	p.S559*	ENST00000341259	NM_005475.2	559	tCa/tAa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432040	121432040	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	181	602	0	ENST00000257555.6:c.787C>A	p.Arg263Ser	p.R263S	ENST00000257555		263	Cgt/Agt																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134297	41134297	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	197	384	1	ENST00000379561.5:c.1331A>T	p.Asp444Val	p.D444V	ENST00000379561	NM_002015.3	444	gAc/gTc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95566164	95566164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	232	460	0	ENST00000343455.3:c.4159G>T	p.Val1387Leu	p.V1387L	ENST00000343455	NM_177438.2	1387	Gta/Tta																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680725	88680725	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	282	566	0	ENST00000360948.2:c.532G>T	p.Gly178Trp	p.G178W	ENST00000360948	NM_001012338.2	178	Ggg/Tgg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031880	10031880	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	222	499	1	ENST00000330684.3:c.943G>T	p.Glu315Ter	p.E315*	ENST00000330684	NM_001134407.1	315	Gag/Tag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10259662	10259662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	203	393	0	ENST00000340748.4:c.2570G>T	p.Gly857Val	p.G857V	ENST00000340748		857	gGg/gTg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45872238	45872238	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	171	537	2	ENST00000391945.4:c.196G>T	p.Glu66Ter	p.E66*	ENST00000391945	NM_000400.3	66	Gag/Tag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965665	25965665	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	165	470	0	ENST00000435504.4:c.3541A>G	p.Thr1181Ala	p.T1181A	ENST00000435504		1181	Act/Gct																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966954	25966954	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	516	499	0	ENST00000435504.4:c.2252A>T	p.Gln751Leu	p.Q751L	ENST00000435504		751	cAg/cTg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190742002	190742002	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	233	403	0	ENST00000441310.2:c.2639A>T	p.Glu880Val	p.E880V	ENST00000441310	NM_000534.4	880	gAa/gTa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439155	52439155	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	282	572	1	ENST00000460680.1:c.1087A>T	p.Asn363Tyr	p.N363Y	ENST00000460680	NM_004656.3	363	Aat/Tat																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468442	89468443	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	145	347	0	ENST00000336596.2:c.1979_1980del	p.Thr660ArgfsTer18	p.T660Rfs*18	ENST00000336596	NM_005233.5	659	tAC/t																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134644656	134644656	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	189	393	0	ENST00000398015.3:c.59-2A>G		p.X20_splice	ENST00000398015	NM_004441.4	20																																																																																
PRKCI	5584	MSKCC	GRCh37	3	169940465	169940465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	220	354	0	ENST00000295797.4:c.8C>A	p.Thr3Asn	p.T3N	ENST00000295797	NM_002740.5	3	aCc/aAc																																																																															
TP63	8626	MSKCC	GRCh37	3	189607266	189607266	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	275	569	0	ENST00000264731.3:c.1645A>T	p.Ile549Phe	p.I549F	ENST00000264731	NM_003722.4	549	Att/Ttt																																																																															
KDR	3791	MSKCC	GRCh37	4	55981537	55981537	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	115	383	0	ENST00000263923.4:c.400G>T	p.Gly134Ter	p.G134*	ENST00000263923	NM_002253.2	134	Gga/Tga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86629155	86629155	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	183	380	0	ENST00000274376.6:c.899+1G>T		p.X300_splice	ENST00000274376	NM_002890.2	300																																																																																
PDGFRB	5159	MSKCC	GRCh37	5	149501445	149501445	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	314	482	0	ENST00000261799.4:c.2342C>A	p.Ser781Tyr	p.S781Y	ENST00000261799	NM_002609.3	781	tCt/tAt																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158689	26158689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	10	92	0	ENST00000289316.2:c.292G>T	p.Ala98Ser	p.A98S	ENST00000289316	NM_138720.2	98	Gcc/Tcc																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197348	26197348	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	162	331	0	ENST00000356476.2:c.131C>A	p.Pro44His	p.P44H	ENST00000356476		44	cCc/cAc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32181885	32181885	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	216	511	0	ENST00000375023.3:c.2167+2T>A		p.X723_splice	ENST00000375023	NM_004557.3	723																																																																																
PMS2	5395	MSKCC	GRCh37	7	6027077	6027077	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	239	232	0	ENST00000265849.7:c.1319del	p.Pro440GlnfsTer8	p.P440Qfs*8	ENST00000265849	NM_000535.5	440	cCa/ca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845982	151845982	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	74	441	0	ENST00000262189.6:c.13030G>C	p.Asp4344His	p.D4344H	ENST00000262189	NM_170606.2	4344	Gat/Cat																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538747	23538747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	171	283	0	ENST00000380871.4:c.692C>T	p.Pro231Leu	p.P231L	ENST00000380871	NM_006167.3	231	cCa/cTa																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5557738	5557738	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	175	350	0	ENST00000397747.3:c.752T>G	p.Leu251Arg	p.L251R	ENST00000397747	NM_025239.3	251	cTg/cGg																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1314940	1314940	+	downstream_gene_variant	3'Flank	SNP	G	G	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	129	515	0				ENST00000381566																																																																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0027656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	346	557	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912092	114912101	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TGGCATGCAC	TGGCATGCAC	-			P-0027656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	104	338	0	ENST00000543371.1:c.1164_1173del	p.Trp388CysfsTer100	p.W388Cfs*100	ENST00000543371	NM_001198531.1	388	TGGCATGCACtg/tg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584731	48584732	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	113	351	0	ENST00000342988.3:c.811dup	p.Ser271LysfsTer2	p.S271Kfs*2	ENST00000342988	NM_005359.5	270	gga/ggAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249469	153249469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	560	485	0	ENST00000281708.4:c.1309G>A	p.Gly437Arg	p.G437R	ENST00000281708	NM_033632.3	437	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112111390	112111390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	88	311	0	ENST00000257430.4:c.487C>T	p.Gln163Ter	p.Q163*	ENST00000257430	NM_000038.5	163	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175467	112175471	+	frameshift_variant	Frame_Shift_Del	DEL	ACTTG	ACTTG	-			P-0027656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	84	242	0	ENST00000257430.4:c.4177_4181del	p.Leu1393Ter	p.L1393*	ENST00000257430	NM_000038.5	1392	tcACTTGat/tcat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	273	781	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
RB1	5925	MSKCC	GRCh37	13	48878061	48878062	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	149	293	0	ENST00000267163.4:c.19dup	p.Arg7ProfsTer24	p.R7Pfs*24	ENST00000267163	NM_000321.2	5	acc/aCcc																																																																															
PARK2	5071	MSKCC	GRCh37	6	161771155	161771155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	91	563	0	ENST00000366898.1:c.1374G>T	p.Met458Ile	p.M458I	ENST00000366898	NM_004562.2	458	atG/atT																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551886	150551886	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	94	362	2	ENST00000369026.2:c.121G>C	p.Glu41Gln	p.E41Q	ENST00000369026	NM_021960.4	41	Gag/Cag																																																																															
TET1	80312	MSKCC	GRCh37	10	70432741	70432741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	124	576	0	ENST00000373644.4:c.4763G>A	p.Cys1588Tyr	p.C1588Y	ENST00000373644	NM_030625.2	1588	tGt/tAt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864234	57864234	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	125	492	0	ENST00000228682.2:c.1711C>G	p.Pro571Ala	p.P571A	ENST00000228682	NM_005269.2	571	Cca/Gca																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112888210	112888210	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	65	539	0	ENST00000351677.2:c.226G>T	p.Glu76Ter	p.E76*	ENST00000351677	NM_002834.3	76	Gag/Tag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467760	99467760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs150221450		P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	81	308	2	ENST00000268035.6:c.2629C>T	p.Arg877Ter	p.R877*	ENST00000268035	NM_000875.3	877	Cga/Tga																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825537	50825537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	85	450	0	ENST00000398568.2:c.2168G>T	p.Gly723Val	p.G723V	ENST00000398568	NM_001042412.1	723	gGc/gTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228154	36228154	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	92	626	0	ENST00000222270.7:c.7540G>C	p.Val2514Leu	p.V2514L	ENST00000222270	NM_014727.1	2514	Gtc/Ctc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1959722	1959722	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	84	333	0	ENST00000382891.5:c.2944C>A	p.Gln982Lys	p.Q982K	ENST00000382891	NM_133335.3	982	Cag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628326	187628326	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	128	516	0	ENST00000441802.2:c.2656G>T	p.Glu886Ter	p.E886*	ENST00000441802	NM_005245.3	886	Gag/Tag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332865	152332865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	39	410	0	ENST00000206249.3:c.1171C>A	p.Leu391Ile	p.L391I	ENST00000206249	NM_000125.3	391	Ctc/Atc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877975	151877975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	93	324	0	ENST00000262189.6:c.6970G>T	p.Asp2324Tyr	p.D2324Y	ENST00000262189	NM_170606.2	2324	Gat/Tat																																																																															
PREX2	80243	MSKCC	GRCh37	8	68981355	68981355	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	67	382	0	ENST00000288368.4:c.1427A>T	p.Gln476Leu	p.Q476L	ENST00000288368	NM_024870.2	476	cAg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0027664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	300	580	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589755	69589755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	24	177	0	ENST00000168712.1:c.98C>A	p.Thr33Asn	p.T33N	ENST00000168712	NM_002007.2	33	aCt/aAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66468001	66468001	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	37	241	0	ENST00000273854.3:c.268G>C	p.Asp90His	p.D90H	ENST00000273854	NM_004439.5	90	Gat/Cat																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099569	157099569	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	52	179	0	ENST00000346085.5:c.506G>T	p.Gly169Val	p.G169V	ENST00000346085	NM_020732.3	169	gGc/gTc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372553	55372553	+	stop_lost	Nonstop_Mutation	SNP	T	T	A			P-0027664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	95	550	1	ENST00000297316.4:c.1243T>A	p.Ter415ArgextTer48	p.*415Rext*48	ENST00000297316	NM_022454.3	415	Tga/Aga																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944484	71944484	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0027117-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			48	16	657	0	ENST00000298229.2:c.2041-1G>C		p.X681_splice	ENST00000298229	NM_001567.3	681																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0027408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	113	499	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610154	10610154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	150	682	1	ENST00000171111.5:c.556G>T	p.Gly186Cys	p.G186C	ENST00000171111	NM_203500.1	186	Ggc/Tgc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18644404	18644404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	77	399	0	ENST00000266497.5:c.2582T>C	p.Ile861Thr	p.I861T	ENST00000266497		861	aTt/aCt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149503852	149503852	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	116	602	1	ENST00000261799.4:c.1984C>A	p.Leu662Met	p.L662M	ENST00000261799	NM_002609.3	662	Ctg/Atg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115275233	115275233	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	115	540	0	ENST00000438362.2:c.1180C>T	p.Arg394Ter	p.R394*	ENST00000438362	NM_001242891.1	394	Cga/Tga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	495141	495141	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0027408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	82	429	0	ENST00000399788.2:c.166-1G>T		p.X56_splice	ENST00000399788	NM_001042603.1	56																																																																																
SLX4	84464	MSKCC	GRCh37	16	3633248	3633248	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	72	962	0	ENST00000294008.3:c.5003A>T	p.Gln1668Leu	p.Q1668L	ENST00000294008	NM_032444.2	1668	cAa/cTa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786141	3786141	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	76	812	0	ENST00000262367.5:c.4624G>C	p.Gly1542Arg	p.G1542R	ENST00000262367	NM_004380.2	1542	Ggt/Cgt																																																																															
CYLD	1540	MSKCC	GRCh37	16	50784039	50784040	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0027408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	109	699	0	ENST00000398568.2:c.430_431delinsTT	p.Gly144Leu	p.G144L	ENST00000398568	NM_001042412.1	144	GGa/TTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578409	7578410	+	missense_variant	Missense_Mutation	DNP	CT	CT	TC			P-0027408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	126	638	0	ENST00000269305.4:c.520_521delinsGA	p.Arg174Glu	p.R174E	ENST00000269305	NM_001126112.2	174	AGg/GAg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116217	209116217	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	83	464	0	ENST00000345146.2:c.59G>C	p.Arg20Pro	p.R20P	ENST00000345146	NM_005896.2	20	cGa/cCa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40709556	40709556	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	98	654	0	ENST00000373198.4:c.4346T>C	p.Val1449Ala	p.V1449A	ENST00000373198	NM_133170.3	1449	gTa/gCa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730803	40730803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	134	666	0	ENST00000373198.4:c.3732C>A	p.Asp1244Glu	p.D1244E	ENST00000373198	NM_133170.3	1244	gaC/gaA																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100980	41100980	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	97	567	0	ENST00000373198.4:c.1376G>T	p.Arg459Leu	p.R459L	ENST00000373198	NM_133170.3	459	cGg/cTg																																																																															
VHL	7428	MSKCC	GRCh37	3	10183854	10183854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	133	525	0	ENST00000256474.2:c.323G>T	p.Arg108Leu	p.R108L	ENST00000256474	NM_000551.3	108	cGc/cTc																																																																															
KDR	3791	MSKCC	GRCh37	4	55961083	55961083	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	141	772	0	ENST00000263923.4:c.2857G>T	p.Gly953Ter	p.G953*	ENST00000263923	NM_002253.2	953	Gga/Tga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522294	157522294	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0027408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	139	743	0	ENST00000346085.5:c.4566T>G	p.Tyr1522Ter	p.Y1522*	ENST00000346085	NM_020732.3	1522	taT/taG																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974713	21974714	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCAGCGCCCCCGCCTCC			P-0027408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	22	352	0	ENST00000304494.5:c.96_113dup	p.Glu33_Pro38dup	p.E33_P38dup	ENST00000304494	NM_000077.4	33	ccc/ccGGAGGCGGGGGCGCTGCCc																																																																															
ABL1	25	MSKCC	GRCh37	9	133759457	133759457	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	142	718	0	ENST00000318560.5:c.1780G>T	p.Asp594Tyr	p.D594Y	ENST00000318560	NM_005157.4	594	Gac/Tac																																																																															
MED12	9968	MSKCC	GRCh37	X	70356750	70356750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	66	591	1	ENST00000374080.3:c.5422C>T	p.Arg1808Trp	p.R1808W	ENST00000374080		1808	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	127	567	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0027412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	135	691	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610608	52610608	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	150	618	0	ENST00000394830.3:c.3565G>T	p.Glu1189Ter	p.E1189*	ENST00000394830	NM_018313.4	1189	Gaa/Taa																																																																															
BLM	641	MSKCC	GRCh37	15	91328208	91328208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	112	546	0	ENST00000355112.3:c.2720C>T	p.Thr907Met	p.T907M	ENST00000355112	NM_000057.2	907	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0027414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	243	760	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80430633	80430633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	153	305	0	ENST00000286548.4:c.375G>T	p.Glu125Asp	p.E125D	ENST00000286548	NM_002072.3	125	gaG/gaT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106321	27106322	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0027414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	111	565	2	ENST00000324856.7:c.5932_5933delinsAT	p.Ala1978Ile	p.A1978I	ENST00000324856	NM_006015.4	1978	GCc/ATc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012898	176012898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	205	644	1	ENST00000367669.3:c.1478G>A	p.Gly493Asp	p.G493D	ENST00000367669	NM_022457.5	493	gGc/gAc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828096	243828096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	198	548	0	ENST00000263826.5:c.262C>A	p.His88Asn	p.H88N	ENST00000263826	NM_005465.4	88	Cat/Aat																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712793	43712793	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	238	761	0	ENST00000382044.4:c.4391G>T	p.Arg1464Leu	p.R1464L	ENST00000382044	NM_001141980.1	1464	cGt/cTt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52719125	52719125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	199	669	0	ENST00000322088.6:c.901G>T	p.Ala301Ser	p.A301S	ENST00000322088	NM_014225.5	301	Gca/Tca																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967293	134967293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	236	655	0	ENST00000398015.3:c.2632C>A	p.Leu878Ile	p.L878I	ENST00000398015	NM_004441.4	878	Cta/Ata																																																																															
ATR	545	MSKCC	GRCh37	3	142177868	142177868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	406	549	0	ENST00000350721.4:c.7435G>A	p.Glu2479Lys	p.E2479K	ENST00000350721	NM_001184.3	2479	Gaa/Aaa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295276	1295276	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0027414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	127	446	0				ENST00000310581	NM_198253.2																																																																																	
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0027420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	53	494	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0027420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	78	673	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603038	48603039	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGCAGCAGCAGGCGGCTACTGCACAAGC			P-0027420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	17	379	1	ENST00000342988.3:c.1349_1376dup	p.Ala460GlyfsTer43	p.A460Gfs*43	ENST00000342988	NM_005359.5	447	atg/aTGCAGCAGCAGGCGGCTACTGCACAAGCtg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214395	5214395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	41	502	0	ENST00000357368.4:c.4591G>A	p.Val1531Ile	p.V1531I	ENST00000357368	NM_002850.3	1531	Gtc/Atc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31016166	31016166	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	49	576	0	ENST00000375687.4:c.412A>G	p.Thr138Ala	p.T138A	ENST00000375687	NM_015338.5	138	Aca/Gca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	56	549	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0027424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	37	500	2	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0027427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	32	588	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	242	636	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	141	636	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214594	5214594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	280	773	0	ENST00000357368.4:c.4472C>T	p.Thr1491Met	p.T1491M	ENST00000357368	NM_002850.3	1491	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0027427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	326	302	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	360	694	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094327	27094327	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	333	615	1	ENST00000324856.7:c.3035del	p.Tyr1012LeufsTer27	p.Y1012Lfs*27	ENST00000324856	NM_006015.4	1012	tAt/tt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119877	70119878	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1237	66	671	0	ENST00000245479.2:c.882dup	p.Asp295Ter	p.D295*	ENST00000245479	NM_000346.3	293	-/T																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247253	153247253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	357	578	0	ENST00000281708.4:c.1549G>A	p.Gly517Arg	p.G517R	ENST00000281708	NM_033632.3	517	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	295	598	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0027430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	377	439	5	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247294	153247294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	580	468	0	ENST00000281708.4:c.1508C>T	p.Ala503Val	p.A503V	ENST00000281708	NM_033632.3	503	gCa/gTa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942515	17942515	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149452625		P-0027430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	383	638	0	ENST00000458235.1:c.2773C>T	p.Arg925Cys	p.R925C	ENST00000458235	NM_000215.3	925	Cgc/Tgc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647026	23647026	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	164	682	0	ENST00000261584.4:c.841A>T	p.Ile281Phe	p.I281F	ENST00000261584	NM_024675.3	281	Att/Ttt																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26046009	26046009	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	111	348	0	ENST00000540144.1:c.371A>G	p.Asp124Gly	p.D124G	ENST00000540144	NM_003531.2	124	gAt/gGt																																																																															
IL10	3586	MSKCC	GRCh37	1	206944256	206944256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	253	286	1	ENST00000423557.1:c.374G>A	p.Arg125His	p.R125H	ENST00000423557	NM_000572.2	125	cGc/cAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0027586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	334	560	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0027586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	783	505	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0027586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	262	281	0	ENST00000412916.2:c.165+1del		p.X55_splice	ENST00000412916		55																																																																																
TBX3	6926	MSKCC	GRCh37	12	115112553	115112555	+	frameshift_variant	Frame_Shift_Del	DEL	GAG	GAG	AT			P-0027586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	539	603	2	ENST00000257566.3:c.1185_1187delinsAT	p.Thr397ProfsTer235	p.T397Pfs*235	ENST00000257566	NM_016569.3	395	atCTCc/atATc																																																																															
CDH1	999	MSKCC	GRCh37	16	68842438	68842439	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	723	582	0	ENST00000261769.5:c.504dupA	p.Gly169ArgfsTer5	p.G169Rfs*5	ENST00000261769	NM_004360.3	167	gaa/gAaa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045934	47045934	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	536	525	1	ENST00000329236.7:c.2495C>A	p.Ser832Ter	p.S832*	ENST00000329236	NM_001204466.1	832	tCa/tAa																																																																															
AR	367	MSKCC	GRCh37	X	66937326	66937326	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	23	288	0	ENST00000374690.3:c.2180G>T	p.Arg727Leu	p.R727L	ENST00000374690	NM_000044.3	727	cGc/cTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	97	429	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793663		P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	327	646	1	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	277	369	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911295	32911295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	269	597	2	ENST00000380152.3:c.2803G>A	p.Asp935Asn	p.D935N	ENST00000380152		935	Gat/Aat																																																																															
ATRX	546	MSKCC	GRCh37	X	76814313	76814313	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	88	352	1	ENST00000373344.5:c.6331C>T	p.Arg2111Ter	p.R2111*	ENST00000373344	NM_000489.3	2111	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	366	505	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	74	391	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																															
RET	5979	MSKCC	GRCh37	10	43615539	43615539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	291	481	0	ENST00000355710.3:c.2618G>A	p.Arg873Gln	p.R873Q	ENST00000355710	NM_020975.4	873	cGg/cAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117872	70117872	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	336	504	1	ENST00000245479.2:c.340G>C	p.Val114Leu	p.V114L	ENST00000245479	NM_000346.3	114	Gtg/Ctg																																																																															
JUN	3725	MSKCC	GRCh37	1	59248091	59248091	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	254	247	2	ENST00000371222.2:c.652C>T	p.Gln218Ter	p.Q218*	ENST00000371222	NM_002228.3	218	Cag/Tag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554196	63554197	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	364	653	0	ENST00000307078.5:c.542dup	p.Met182AspfsTer13	p.M182Dfs*13	ENST00000307078	NM_004655.3	181	gtg/gtTg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1650179	1650179	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1135	73	657	0	ENST00000344749.5:c.69C>G	p.Ser23Arg	p.S23R	ENST00000344749	NM_001136139.2	23	agC/agG																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5286082	5286082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200430287		P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1265	202	766	0	ENST00000357368.4:c.70G>A	p.Val24Ile	p.V24I	ENST00000357368	NM_002850.3	24	Gtt/Att																																																																															
SESN1	27244	MSKCC	GRCh37	6	109315795	109315798	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-	rs779935597		P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	303	594	2	ENST00000436639.2:c.987_990del	p.Phe329LeufsTer10	p.F329Lfs*10	ENST00000436639	NM_014454.2	329	ttCTTT/tt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390975	139390975	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	497	784	3	ENST00000277541.6:c.7216C>T	p.Gln2406Ter	p.Q2406*	ENST00000277541	NM_017617.3	2406	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	2532	549	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	1376	786	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1260672	1260672	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201272197		P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1268	147	654	0	ENST00000310581.5:c.2887G>A	p.Gly963Ser	p.G963S	ENST00000310581	NM_198253.2	963	Ggc/Agc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5258034	5258034	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	321	428	1	ENST00000357368.4:c.700G>T	p.Val234Leu	p.V234L	ENST00000357368	NM_002850.3	234	Gtg/Ttg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356281	66356282	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	440	594	0	ENST00000273854.3:c.1215_1216del	p.Cys405Ter	p.C405*	ENST00000273854	NM_004439.5	405	tgTGag/tgag																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156841470	156841470	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	358	729	2	ENST00000524377.1:c.773T>A	p.Leu258His	p.L258H	ENST00000524377	NM_002529.3	258	cTc/cAc																																																																															
RET	5979	MSKCC	GRCh37	10	43615117	43615117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	195	770	1	ENST00000355710.3:c.2531G>A	p.Arg844Gln	p.R844Q	ENST00000355710	NM_020975.4	844	cGg/cAg																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724286	112724286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	560	717	0	ENST00000369452.4:c.170C>T	p.Ser57Phe	p.S57F	ENST00000369452	NM_007373.3	57	tCc/tTc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29007964	29007964	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	204	304	0	ENST00000282397.4:c.805C>A	p.Pro269Thr	p.P269T	ENST00000282397	NM_002019.4	269	Cct/Act																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609556	81609556	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	370	525	0	ENST00000298171.2:c.1154A>G	p.Tyr385Cys	p.Y385C	ENST00000298171	NM_000369.2	385	tAt/tGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68849653	68849653	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	431	583	0	ENST00000261769.5:c.1556A>T	p.Gln519Leu	p.Q519L	ENST00000261769	NM_004360.3	519	cAg/cTg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016654	12016654	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200798818		P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	280	390	0	ENST00000353533.5:c.790G>T	p.Ala264Ser	p.A264S	ENST00000353533	NM_003010.3	264	Gct/Tct																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223087	5223087	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	513	753	1	ENST00000357368.4:c.2716G>T	p.Ala906Ser	p.A906S	ENST00000357368	NM_002850.3	906	Gcg/Tcg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5240307	5240307	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	542	816	0	ENST00000357368.4:c.1607G>T	p.Arg536Met	p.R536M	ENST00000357368	NM_002850.3	536	aGg/aTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244133	5244133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	475	825	0	ENST00000357368.4:c.1349C>A	p.Pro450Gln	p.P450Q	ENST00000357368	NM_002850.3	450	cCg/cAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40727183	40727183	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	150	559	0	ENST00000373198.4:c.3781C>A	p.Gln1261Lys	p.Q1261K	ENST00000373198	NM_133170.3	1261	Cag/Aag																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46267790	46267790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	483	601	0	ENST00000371998.3:c.2551C>T	p.Pro851Ser	p.P851S	ENST00000371998		851	Cca/Tca																																																																															
ERG	2078	MSKCC	GRCh37	21	39817378	39817445	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGGGGGTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGGAAGTCTGTCCATAGTC	GCTGGGGGTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGGAAGTCTGTCCATAGTC	-			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	321	557	0	ENST00000288319.7:c.118_185del	p.Asp40GlnfsTer9	p.D40Qfs*9	ENST00000288319	NM_182918.3	40	GACTATGGACAGACTTCCAAGATGAGCCCACGCGTCCCTCAGCAGGATTGGCTGTCTCAACCCCCAGCc/c																																																																															
KIT	3815	MSKCC	GRCh37	4	55564455	55564455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	289	386	0	ENST00000288135.5:c.343G>T	p.Ala115Ser	p.A115S	ENST00000288135	NM_000222.2	115	Gcc/Tcc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467662	66467662	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	373	435	0	ENST00000273854.3:c.607G>T	p.Gly203Ter	p.G203*	ENST00000273854	NM_004439.5	203	Gga/Tga																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143067121	143067121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	365	441	2	ENST00000262992.4:c.1592G>T	p.Ser531Ile	p.S531I	ENST00000262992	NM_001101669.1	531	aGc/aTc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143129589	143129589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	364	437	0	ENST00000262992.4:c.1061C>A	p.Pro354His	p.P354H	ENST00000262992	NM_001101669.1	354	cCt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187531091	187531091	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	332	561	0	ENST00000441802.2:c.9932G>T	p.Gly3311Val	p.G3311V	ENST00000441802	NM_005245.3	3311	gGc/gTc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68939526	68939526	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	125	510	0	ENST00000288368.4:c.511C>A	p.Gln171Lys	p.Q171K	ENST00000288368	NM_024870.2	171	Caa/Aaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021830	69021830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	589	675	1	ENST00000288368.4:c.3118G>A	p.Val1040Met	p.V1040M	ENST00000288368	NM_024870.2	1040	Gtg/Atg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340361	8340361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	405	560	0	ENST00000356435.5:c.5235G>T	p.Lys1745Asn	p.K1745N	ENST00000356435		1745	aaG/aaT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341976	8341976	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	187	342	0	ENST00000356435.5:c.4664C>A	p.Ala1555Glu	p.A1555E	ENST00000356435		1555	gCg/gAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486014	8486014	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	381	600	0	ENST00000356435.5:c.2803G>C	p.Val935Leu	p.V935L	ENST00000356435		935	Gtc/Ctc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023307	27023307	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0027589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	99	273	0	ENST00000324856.7:c.413C>G	p.Ser138Ter	p.S138*	ENST00000324856	NM_006015.4	138	tCa/tGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0027589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	296	656	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53241055	53241055	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	110	574	0	ENST00000375401.3:c.1156G>C	p.Glu386Gln	p.E386Q	ENST00000375401	NM_004187.3	386	Gag/Cag																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770065	56770065	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	124	466	0	ENST00000337432.4:c.61C>G	p.Pro21Ala	p.P21A	ENST00000337432	NM_058216.2	21	Cca/Gca																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805979	32805979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	137	682	0	ENST00000374899.4:c.32C>T	p.Ser11Phe	p.S11F	ENST00000374899	NM_018833.2	11	tCc/tTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105664	27105665	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	187	383	0	ENST00000324856.7:c.5276dup	p.Met1759IlefsTer14	p.M1759Ifs*14	ENST00000324856	NM_006015.4	1759	atg/aTtg																																																																															
CDH1	999	MSKCC	GRCh37	16	68842363	68842363	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	288	576	0	ENST00000261769.5:c.426del	p.Asn144ThrfsTer71	p.N144Tfs*71	ENST00000261769	NM_004360.3	142	Ttt/tt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165545	47165545	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	213	481	0	ENST00000409792.3:c.581C>G	p.Pro194Arg	p.P194R	ENST00000409792	NM_014159.6	194	cCt/cGt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165572	47165572	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	222	479	0	ENST00000409792.3:c.554C>A	p.Ser185Ter	p.S185*	ENST00000409792	NM_014159.6	185	tCa/tAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161673	56161673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	82	453	0	ENST00000399503.3:c.1170G>T	p.Gln390His	p.Q390H	ENST00000399503	NM_005921.1	390	caG/caT																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372448	55372448	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	136	756	0	ENST00000297316.4:c.1138C>T	p.Gln380Ter	p.Q380*	ENST00000297316	NM_022454.3	380	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	133	523	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	221	704	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584787	48584787	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	82	559	2	ENST00000342988.3:c.865C>T	p.Gln289Ter	p.Q289*	ENST00000342988	NM_005359.5	289	Cag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730831	40730831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	69	673	0	ENST00000373198.4:c.3704G>A	p.Arg1235His	p.R1235H	ENST00000373198	NM_133170.3	1235	cGc/cAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76938776	76938776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	110	694	0	ENST00000373344.5:c.1972C>T	p.Arg658Cys	p.R658C	ENST00000373344	NM_000489.3	658	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0027597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	331	678	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467780	50467780	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760454379		P-0027597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	380	568	2	ENST00000331340.3:c.1015G>A	p.Glu339Lys	p.E339K	ENST00000331340	NM_006060.4	339	Gag/Aag																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885928	111885928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	272	577	0	ENST00000341259.2:c.1550G>T	p.Gly517Val	p.G517V	ENST00000341259	NM_005475.2	517	gGg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175257	112175258	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	147	329	0	ENST00000257430.4:c.3967dup	p.Val1323GlyfsTer9	p.V1323Gfs*9	ENST00000257430	NM_000038.5	1322	-/G																																																																															
IRF4	3662	MSKCC	GRCh37	6	401492	401492	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752393433		P-0027597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	193	461	1	ENST00000380956.4:c.814G>A	p.Glu272Lys	p.E272K	ENST00000380956	NM_001195286.1	272	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	989	473	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0027602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	264	704	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28624327	28624327	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	217	583	0	ENST00000241453.7:c.647A>G	p.Lys216Arg	p.K216R	ENST00000241453	NM_004119.2	216	aAg/aGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0027609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	143	632	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175219	112175219	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0027609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	53	221	0	ENST00000257430.4:c.3928A>T	p.Lys1310Ter	p.K1310*	ENST00000257430	NM_000038.5	1310	Aag/Tag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250779	10250779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	142	630	0	ENST00000340748.4:c.3701G>A	p.Arg1234His	p.R1234H	ENST00000340748		1234	cGc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739013	40739013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	378	551	1	ENST00000373198.4:c.3271C>T	p.Leu1091Phe	p.L1091F	ENST00000373198	NM_133170.3	1091	Ctc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	105	583	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	219	790	2	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400822	72400822	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	78	411	0	ENST00000357731.5:c.349A>G	p.Thr117Ala	p.T117A	ENST00000357731	NM_173808.2	117	Acg/Gcg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149450021	149450021	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	91	568	1	ENST00000286301.3:c.1196G>A	p.Arg399Gln	p.R399Q	ENST00000286301	NM_005211.3	399	cGa/cAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575055	48575055	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	57	362	0	ENST00000342988.3:c.250-1G>C		p.X84_splice	ENST00000342988	NM_005359.5	84																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134967293	134967293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	142	728	1	ENST00000398015.3:c.2632C>A	p.Leu878Ile	p.L878I	ENST00000398015	NM_004441.4	878	Cta/Ata																																																																															
MTOR	2475	MSKCC	GRCh37	1	11276228	11276228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	73	563	0	ENST00000361445.4:c.3094G>A	p.Asp1032Asn	p.D1032N	ENST00000361445	NM_004958.3	1032	Gat/Aat																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649891	88649891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	44	454	0	ENST00000372037.3:c.140G>A	p.Gly47Glu	p.G47E	ENST00000372037	NM_004329.2	47	gGa/gAa																																																																															
SUFU	51684	MSKCC	GRCh37	10	104353466	104353466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	67	778	2	ENST00000369902.3:c.671G>T	p.Arg224Leu	p.R224L	ENST00000369902	NM_016169.3	224	cGg/cTg																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589729	69589729	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	46	280	0	ENST00000168712.1:c.124G>T	p.Glu42Ter	p.E42*	ENST00000168712	NM_002007.2	42	Gag/Tag																																																																															
PGR	5241	MSKCC	GRCh37	11	100922274	100922274	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	64	558	0	ENST00000325455.5:c.2238C>G	p.Asp746Glu	p.D746E	ENST00000325455	NM_001202474.3	746	gaC/gaG																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478882	56478882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	261	838	1	ENST00000267101.3:c.338G>T	p.Gly113Val	p.G113V	ENST00000267101	NM_001982.3	113	gGg/gTg																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233524	69233536	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTATGGCCTGC	TCTTATGGCCTGC	-			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	94	458	0	ENST00000462284.1:c.1390_1402del	p.Met465HisfsTer6	p.M465Hfs*6	ENST00000462284	NM_002392.5	463	caTCTTATGGCCTGC/ca																																																																															
SETD8	387893	MSKCC	GRCh37	12	123879747	123879747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	28	166	1	ENST00000330479.4:c.443C>T	p.Thr148Ile	p.T148I	ENST00000330479	NM_020382.3	148	aCc/aTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133225522	133225522	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	145	608	0	ENST00000320574.5:c.4142A>C	p.Tyr1381Ser	p.Y1381S	ENST00000320574	NM_006231.2	1381	tAt/tCt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28626686	28626686	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	102	456	0	ENST00000241453.7:c.610G>T	p.Glu204Ter	p.E204*	ENST00000241453	NM_004119.2	204	Gaa/Taa																																																																															
MGA	23269	MSKCC	GRCh37	15	41961683	41961683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	89	493	0	ENST00000219905.7:c.591G>A	p.Met197Ile	p.M197I	ENST00000219905	NM_001164273.1	197	atG/atA																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88726682	88726682	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	144	568	0	ENST00000360948.2:c.362G>T	p.Arg121Ile	p.R121I	ENST00000360948	NM_001012338.2	121	aGa/aTa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969980	81969980	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	78	399	0	ENST00000359376.3:c.3049G>T	p.Ala1017Ser	p.A1017S	ENST00000359376	NM_002661.3	1017	Gca/Tca																																																																															
NF1	4763	MSKCC	GRCh37	17	29562762	29562762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	103	490	0	ENST00000358273.4:c.3842C>G	p.Ala1281Gly	p.A1281G	ENST00000358273	NM_001042492.2	1281	gCc/gGc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602721	10602721	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	144	781	1	ENST00000171111.5:c.857A>T	p.Gln286Leu	p.Q286L	ENST00000171111	NM_203500.1	286	cAg/cTg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505417	25505418	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	121	494	0	ENST00000264709.3:c.340dup	p.Ala114GlyfsTer10	p.A114Gfs*10	ENST00000264709	NM_175629.2	114	gcc/gGcc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728682	190728682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	73	498	0	ENST00000441310.2:c.2070G>T	p.Arg690Ser	p.R690S	ENST00000441310	NM_000534.4	690	agG/agT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730916	40730916	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	88	587	0	ENST00000373198.4:c.3619C>A	p.Arg1207Ser	p.R1207S	ENST00000373198	NM_133170.3	1207	Cgt/Agt																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427702	72427702	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	96	511	0	ENST00000477973.2:c.786A>T	p.Lys263Met	p.K263M	ENST00000477973	NM_012234.5	263	aAg/aTg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390928	89390928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	86	448	0	ENST00000336596.2:c.994G>T	p.Val332Phe	p.V332F	ENST00000336596	NM_005233.5	332	Gtt/Ttt																																																																															
KIT	3815	MSKCC	GRCh37	4	55593617	55593617	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	84	568	0	ENST00000288135.5:c.1683G>T	p.Glu561Asp	p.E561D	ENST00000288135	NM_000222.2	561	gaG/gaT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32171552	32171552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	244	611	0	ENST00000375023.3:c.3226C>A	p.Pro1076Thr	p.P1076T	ENST00000375023	NM_004557.3	1076	Ccc/Acc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066704	94066704	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	104	554	0	ENST00000369303.4:c.1055G>T	p.Ser352Ile	p.S352I	ENST00000369303	NM_004440.3	352	aGt/aTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874863	151874863	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	88	372	0	ENST00000262189.6:c.7675A>G	p.Ile2559Val	p.I2559V	ENST00000262189	NM_170606.2	2559	Att/Gtt																																																																															
ARAF	369	MSKCC	GRCh37	X	47430289	47430289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	148	771	3	ENST00000377045.4:c.1564G>T	p.Val522Leu	p.V522L	ENST00000377045	NM_001654.4	522	Gtg/Ttg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37665992	37665992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	19	430	0	ENST00000447079.4:c.2644C>T	p.Arg882Trp	p.R882W	ENST00000447079	NM_015083.1	882	Cgg/Tgg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696434	47696434	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	16	581	0	ENST00000347630.2:c.389A>T	p.Asp130Val	p.D130V	ENST00000347630	NM_001007230.1	130	gAc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753660142		P-0027640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	39	636	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	106	448	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038929	12038929	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	57	385	0	ENST00000396373.4:c.1222A>T	p.Arg408Trp	p.R408W	ENST00000396373	NM_001987.4	408	Agg/Tgg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482861	67482861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	71	268	0	ENST00000327367.4:c.1265C>T	p.Ser422Phe	p.S422F	ENST00000327367	NM_005902.3	422	tCc/tTc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46211490	46211490	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	24	232	0	ENST00000334344.6:c.456T>G	p.Phe152Leu	p.F152L	ENST00000334344	NM_152641.2	152	ttT/ttG																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492694	56492694	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	38	317	0	ENST00000407977.2:c.245T>C	p.Leu82Ser	p.L82S	ENST00000407977		82	tTa/tCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0027421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	118	541	3	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	53	705	1	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81574763	81574763	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	34	534	0	ENST00000298171.2:c.659C>A	p.Ala220Glu	p.A220E	ENST00000298171	NM_000369.2	220	gCa/gAa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295198	1295198	+	upstream_gene_variant	5'Flank	SNP	A	A	C			P-0027421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	16	215	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	495	644	0	ENST00000269305.4:c.434T>G	p.Leu145Arg	p.L145R	ENST00000269305	NM_001126112.2	145	cTg/cGg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090496	5090496	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	92	381	0	ENST00000381652.3:c.2812C>T	p.Arg938Ter	p.R938*	ENST00000381652	NM_004972.3	938	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108114846	108114846	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0027466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	84	377	0	ENST00000278616.4:c.662+1G>T		p.X221_splice	ENST00000278616	NM_000051.3	221																																																																																
CDH1	999	MSKCC	GRCh37	16	68842360	68842363	+	frameshift_variant	Frame_Shift_Del	DEL	ACAT	ACAT	-			P-0027466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	90	475	0	ENST00000261769.5:c.421_424del	p.Thr141PhefsTer73	p.T141Ffs*73	ENST00000261769	NM_004360.3	141	ACATtt/tt																																																																															
MSH3	4437	MSKCC	GRCh37	5	80088610	80088610	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	118	504	0	ENST00000265081.6:c.2602G>C	p.Asp868His	p.D868H	ENST00000265081	NM_002439.4	868	Gat/Cat																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	378	383	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18573963	18573963	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	249	235	0	ENST00000266497.5:c.2281G>T	p.Val761Phe	p.V761F	ENST00000266497		761	Gtt/Ttt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465459	99465459	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	321	405	0	ENST00000268035.6:c.2284del	p.Thr762ProfsTer77	p.T762Pfs*77	ENST00000268035	NM_000875.3	762	Acc/cc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460537	149460537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	456	529	0	ENST00000286301.3:c.100C>T	p.Pro34Ser	p.P34S	ENST00000286301	NM_005211.3	34	Cca/Tca																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265284	10265284	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	316	357	0	ENST00000340748.4:c.1762del	p.Ala588LeufsTer109	p.A588Lfs*109	ENST00000340748		588	Gct/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	243	666	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0027479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	8	481	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968322	2968323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	114	512	3	ENST00000396946.4:c.1663dupC	p.Arg555ProfsTer38	p.R555Pfs*38	ENST00000396946	NM_032415.4	555	cgg/cCgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247367	153247367	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	103	266	0	ENST00000281708.4:c.1435C>T	p.Arg479Ter	p.R479*	ENST00000281708	NM_033632.3	479	Cga/Tga																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18276986	18276986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	90	451	0	ENST00000222254.8:c.1433G>A	p.Arg478His	p.R478H	ENST00000222254	NM_005027.3	478	cGt/cAt																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778100	27778100	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	141	519	1	ENST00000369163.2:c.249G>T	p.Leu83Phe	p.L83F	ENST00000369163	NM_003536.2	83	ttG/ttT																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51436152	51436152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	66	388	0	ENST00000262662.1:c.112G>A	p.Gly38Arg	p.G38R	ENST00000262662		38	Gga/Aga																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154794	2154794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	135	779	1	ENST00000434045.2:c.427C>T	p.Pro143Ser	p.P143S	ENST00000434045	NM_001127598.1	143	Ccc/Tcc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18439843	18439843	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	32	433	0	ENST00000266497.5:c.745del	p.Cys249AlafsTer4	p.C249Afs*4	ENST00000266497		247	tcT/tc																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873248	136873248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	103	320	0	ENST00000241393.3:c.250G>A	p.Asp84Asn	p.D84N	ENST00000241393	NM_003467.2	84	Gac/Aac																																																																															
MST1R	4486	MSKCC	GRCh37	3	49939979	49939979	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	133	732	0	ENST00000296474.3:c.1064A>T	p.Asp355Val	p.D355V	ENST00000296474	NM_002447.2	355	gAt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175229	112175238	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	CTAGGTCAGC	CTAGGTCAGC	TAAAATAAAATAAAATAAAATAAGATAAAATAAAATAAA			P-0027479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	32	212	0	ENST00000257430.4:c.3938_3947delinsTAAAATAAAATAAAATAAAATAAGATAAAATAAAATAAA	p.Thr1313IlefsTer3	p.T1313Ifs*3	ENST00000257430	NM_000038.5	1313	aCTAGGTCAGCt/aTAAAATAAAATAAAATAAAATAAGATAAAATAAAATAAAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0027523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	240	642	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0027526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	113	442	2	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
BARD1	580	MSKCC	GRCh37	2	215645676	215645676	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	155	368	0	ENST00000260947.4:c.922C>G	p.Leu308Val	p.L308V	ENST00000260947	NM_000465.2	308	Ctt/Gtt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120574	94120574	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	106	361	1	ENST00000369303.4:c.477C>A	p.Asp159Glu	p.D159E	ENST00000369303	NM_004440.3	159	gaC/gaA																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133323	38133323	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	197	458	0	ENST00000317025.8:c.4150T>G	p.Ser1384Ala	p.S1384A	ENST00000317025	NM_023034.1	1384	Tca/Gca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	182	512	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0027528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	146	565	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579329	7579329	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912658		P-0027528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	104	537	0	ENST00000269305.4:c.358A>G	p.Lys120Glu	p.K120E	ENST00000269305	NM_001126112.2	120	Aag/Gag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11270894	11270894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	68	430	1	ENST00000361445.4:c.3631G>A	p.Val1211Met	p.V1211M	ENST00000361445	NM_004958.3	1211	Gtg/Atg																																																																															
TET1	80312	MSKCC	GRCh37	10	70333721	70333721	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	40	432	0	ENST00000373644.4:c.1626C>G	p.Asp542Glu	p.D542E	ENST00000373644	NM_030625.2	542	gaC/gaG																																																																															
RB1	5925	MSKCC	GRCh37	13	49039435	49039435	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	101	562	0	ENST00000267163.4:c.2420C>A	p.Ser807Ter	p.S807*	ENST00000267163	NM_000321.2	807	tCa/tAa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647167	23647167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1260	75	645	0	ENST00000261584.4:c.700G>A	p.Asp234Asn	p.D234N	ENST00000261584	NM_024675.3	234	Gat/Aat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376036	8376036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	66	311	0	ENST00000356435.5:c.4561G>T	p.Asp1521Tyr	p.D1521Y	ENST00000356435		1521	Gat/Tat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0027531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	24	553	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0027531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	155	518	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs757274881		P-0027531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	374	759	3	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797314	135797314	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0027531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	25	328	0	ENST00000298552.3:c.555C>G	p.Tyr185Ter	p.Y185*	ENST00000298552	NM_001162426.1	185	taC/taG																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252994	36252995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	183	336	0	ENST00000300305.3:c.367dupG	p.Asp123GlyfsTer15	p.D123Gfs*15	ENST00000300305		123	gat/gGat																																																																															
TP53	7157	MSKCC	GRCh37	17	7573976	7573991	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGTTCCAAGGCCTC	TGAGTTCCAAGGCCTC	-			P-0027545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	178	651	0	ENST00000269305.4:c.1036_1051del	p.Glu346ArgfsTer19	p.E346Rfs*19	ENST00000269305	NM_001126112.2	346	GAGGCCTTGGAACTCAag/ag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184096	56184097	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGT			P-0027545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	98	313	0	ENST00000399503.3:c.4304_4306dup	p.Val1435dup	p.V1435dup	ENST00000399503	NM_005921.1	1435	agt/agTGTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0027551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	59	455	7	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	51	433	4	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	59	470	6	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16040642	16040642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	96	368	0	ENST00000268712.3:c.1492C>T	p.Arg498Cys	p.R498C	ENST00000268712	NM_006311.3	498	Cgc/Tgc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748338	43748338	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0027551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	74	569	8	ENST00000382044.4:c.2468C>G	p.Ser823Ter	p.S823*	ENST00000382044	NM_001141980.1	823	tCa/tGa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120254	70120254	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	553	749	21	ENST00000245479.2:c.1257del	p.Tyr420ThrfsTer50	p.Y420Tfs*50	ENST00000245479	NM_000346.3	419	gCc/gc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046396	128046396	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	32	361	5	ENST00000285398.2:c.867C>A	p.Tyr289Ter	p.Y289*	ENST00000285398	NM_000122.1	289	taC/taA																																																																															
EZH2	2146	MSKCC	GRCh37	7	148511205	148511205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	79	405	3	ENST00000320356.2:c.1697G>A	p.Arg566His	p.R566H	ENST00000320356	NM_004456.4	566	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	57	349	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	94	454	5	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974744	21974775	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	-			P-0027553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	36	262	0	ENST00000304494.5:c.52_83del	p.Thr18AlafsTer15	p.T18Afs*15	ENST00000304494	NM_000077.4	18	ACGGCCGCGGCCCGGGGTCGGGTAGAGGAGGTg/g																																																																															
ATR	545	MSKCC	GRCh37	3	142204030	142204030	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	305	635	0	ENST00000350721.4:c.6173T>C	p.Met2058Thr	p.M2058T	ENST00000350721	NM_001184.3	2058	aTg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0027625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	437	672	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	367	487	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0027625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	143	391	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0027625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	351	486	2	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001524	150001524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	390	533	1	ENST00000253339.5:c.2080C>T	p.Arg694Cys	p.R694C	ENST00000253339		694	Cgt/Tgt																																																																															
HGF	3082	MSKCC	GRCh37	7	81350134	81350134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	254	435	0	ENST00000222390.5:c.1198A>G	p.Met400Val	p.M400V	ENST00000222390	NM_000601.4	400	Atg/Gtg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123688	11123688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	182	762	0	ENST00000344626.4:c.2338G>A	p.Glu780Lys	p.E780K	ENST00000344626	NM_003072.3	780	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0027630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	159	659	1	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
AKT3	10000	MSKCC	GRCh37	1	243778429	243778429	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	160	570	0	ENST00000263826.5:c.596T>C	p.Val199Ala	p.V199A	ENST00000263826	NM_005465.4	199	gTa/gCa																																																																															
CBL	867	MSKCC	GRCh37	11	119142475	119142475	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	336	610	0	ENST00000264033.4:c.474del	p.Phe158LeufsTer8	p.F158Lfs*8	ENST00000264033	NM_005188.3	158	ttC/tt																																																																															
MGA	23269	MSKCC	GRCh37	15	42058866	42058866	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	232	463	3	ENST00000219905.7:c.8589del	p.Phe2863LeufsTer22	p.F2863Lfs*22	ENST00000219905	NM_001164273.1	2862	gcT/gc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039290	47039290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	146	983	3	ENST00000329236.7:c.682C>T	p.Arg228Cys	p.R228C	ENST00000329236	NM_001204466.1	228	Cgc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40864896	40864896	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	523	466	0	ENST00000373198.4:c.2372G>A	p.Arg791Lys	p.R791K	ENST00000373198	NM_133170.3	791	aGa/aAa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692969	89692979	+	frameshift_variant	Frame_Shift_Del	DEL	CCTAGATTTCT	CCTAGATTTCT	-			P-0025275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	40	562	0	ENST00000371953.3:c.453_463del	p.Leu152TrpfsTer24	p.L152Wfs*24	ENST00000371953	NM_000314.4	151	gcCCTAGATTTCTat/gcat																																																																															
BIRC3	330	MSKCC	GRCh37	11	102207831	102207831	+	stop_lost	Nonstop_Mutation	SNP	T	T	G			P-0025275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	85	273	0	ENST00000263464.3:c.1813T>G	p.Ter605GlyextTer10	p.*605Gext*10	ENST00000263464	NM_001165.4	605	Tga/Gga																																																																															
RB1	5925	MSKCC	GRCh37	13	48955480	48955506	+	inframe_deletion	In_Frame_Del	DEL	CGAAAGTTTTATCAAAGCAGAAGGCAA	CGAAAGTTTTATCAAAGCAGAAGGCAA	-			P-0025275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	238	497	0	ENST00000267163.4:c.1597_1623del	p.Glu533_Asn541del	p.E533_N541del	ENST00000267163	NM_000321.2	532	atCGAAAGTTTTATCAAAGCAGAAGGCAAc/atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7573897	7573993	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAGGGCCAGGAAGGGGCTGAGGTCACTCACCTGGAGTGAGCCCTGCTCCCCCCTGGCTCCTTCCCAGCCTGGGCATCCTTGAGTTCCAAGGCCTCAT	TAGGGCCAGGAAGGGGCTGAGGTCACTCACCTGGAGTGAGCCCTGCTCCCCCCTGGCTCCTTCCCAGCCTGGGCATCCTTGAGTTCCAAGGCCTCAT	-			P-0025275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	310	347	0	ENST00000269305.4:c.1034_1100+30del		p.X345_splice	ENST00000269305	NM_001126112.2	345																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40864899	40864899	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0025275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	514	455	0	ENST00000373198.4:c.2370-1G>A		p.X790_splice	ENST00000373198	NM_133170.3	790																																																																																
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	59	517	0	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	53	299	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	27	289	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	100	610	11	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278061	18278061	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	94	607	0	ENST00000222254.8:c.1681A>G	p.Asn561Asp	p.N561D	ENST00000222254	NM_005027.3	561	Aac/Gac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	59	571	0	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																																																															
SYK	6850	MSKCC	GRCh37	9	93606382	93606382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	55	572	0	ENST00000375746.1:c.202C>T	p.Arg68Trp	p.R68W	ENST00000375746	NM_001174167.1	68	Cgg/Tgg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	77	502	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	93	672	6	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960032	134960032	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779665397		P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	49	495	0	ENST00000398015.3:c.2389G>A	p.Ala797Thr	p.A797T	ENST00000398015	NM_004441.4	797	Gcc/Acc																																																																															
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	30	238	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																															
NUP93	9688	MSKCC	GRCh37	16	56832410	56832410	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	29	406	0	ENST00000308159.5:c.320A>G	p.Asp107Gly	p.D107G	ENST00000308159	NM_014669.4	107	gAc/gGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878596	151878596	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	52	489	4	ENST00000262189.6:c.6349del	p.Ser2117ProfsTer26	p.S2117Pfs*26	ENST00000262189	NM_170606.2	2117	Tcc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433689	49433689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	108	801	1	ENST00000301067.7:c.7864G>A	p.Asp2622Asn	p.D2622N	ENST00000301067	NM_003482.3	2622	Gac/Aac																																																																															
CARM1	10498	MSKCC	GRCh37	19	11027412	11027412	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	107	694	1	ENST00000327064.4:c.979C>T	p.Arg327Ter	p.R327*	ENST00000327064	NM_199141.1	327	Cga/Tga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350006	89350006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	63	511	1	ENST00000301030.4:c.2944G>A	p.Glu982Lys	p.E982K	ENST00000301030	NM_001256183.1	982	Gag/Aag																																																																															
ATR	545	MSKCC	GRCh37	3	142188343	142188343	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	27	469	0	ENST00000350721.4:c.6388A>G	p.Thr2130Ala	p.T2130A	ENST00000350721	NM_001184.3	2130	Aca/Gca																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245820	5245820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	95	768	2	ENST00000357368.4:c.955G>A	p.Val319Ile	p.V319I	ENST00000357368	NM_002850.3	319	Gtc/Atc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662610	227662610	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	57	410	1	ENST00000305123.5:c.845T>C	p.Val282Ala	p.V282A	ENST00000305123	NM_005544.2	282	gTc/gCc																																																																															
KDR	3791	MSKCC	GRCh37	4	55955920	55955920	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	58	475	0	ENST00000263923.4:c.3242T>C	p.Val1081Ala	p.V1081A	ENST00000263923	NM_002253.2	1081	gTg/gCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832266	72832266	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	68	379	0	ENST00000268489.5:c.4315C>T	p.Arg1439Ter	p.R1439*	ENST00000268489	NM_006885.3	1439	Cga/Tga																																																																															
ID3	3399	MSKCC	GRCh37	1	23885673	23885673	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	108	493	0	ENST00000374561.5:c.245T>C	p.Val82Ala	p.V82A	ENST00000374561	NM_002167.4	82	gTa/gCa																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743866	46743866	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	69	604	0	ENST00000371975.4:c.2156T>C	p.Val719Ala	p.V719A	ENST00000371975	NM_003579.3	719	gTa/gCa																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166413	118166413	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	29	324	0	ENST00000369448.3:c.923T>C	p.Met308Thr	p.M308T	ENST00000369448	NM_017709.3	308	aTg/aCg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206650046	206650046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	51	521	0	ENST00000367120.3:c.566T>C	p.Val189Ala	p.V189A	ENST00000367120	NM_014002.3	189	gTg/gCg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63829477	63829477	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	37	349	0	ENST00000279873.7:c.1120T>C	p.Trp374Arg	p.W374R	ENST00000279873	NM_032199.2	374	Tgg/Cgg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88681341	88681341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	14	175	1	ENST00000372037.3:c.1231G>A	p.Glu411Lys	p.E411K	ENST00000372037	NM_004329.2	411	Gaa/Aaa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123263346	123263346	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	58	433	2	ENST00000358487.5:c.1397A>T	p.Tyr466Phe	p.Y466F	ENST00000358487	NM_000141.4	466	tAt/tTt																																																																															
SESN3	143686	MSKCC	GRCh37	11	94918457	94918457	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	49	564	0	ENST00000536441.1:c.725A>G	p.Asn242Ser	p.N242S	ENST00000536441	NM_144665.3	242	aAc/aGc																																																																															
ATM	472	MSKCC	GRCh37	11	108106526	108106526	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	66	356	0	ENST00000278616.4:c.461A>G	p.Lys154Arg	p.K154R	ENST00000278616	NM_000051.3	154	aAa/aGa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118359477	118359477	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	46	319	0	ENST00000534358.1:c.4479+2T>C		p.X1493_splice	ENST00000534358	NM_005933.3	1493																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49420783	49420783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	84	502	1	ENST00000301067.7:c.14966G>A	p.Arg4989Gln	p.R4989Q	ENST00000301067	NM_003482.3	4989	cGg/cAg																																																																															
POLE	5426	MSKCC	GRCh37	12	133208998	133208998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	69	585	0	ENST00000320574.5:c.6233G>A	p.Arg2078Gln	p.R2078Q	ENST00000320574	NM_006231.2	2078	cGg/cAg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913624	32913624	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	14	369	0	ENST00000380152.3:c.5132T>C	p.Val1711Ala	p.V1711A	ENST00000380152		1711	gTa/gCa																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873625	35873625	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	41	263	0	ENST00000216797.5:c.226T>C	p.Ser76Pro	p.S76P	ENST00000216797	NM_020529.2	76	Tcg/Ccg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987102	36987102	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	62	664	0	ENST00000354822.5:c.587T>C	p.Val196Ala	p.V196A	ENST00000354822	NM_001079668.2	196	gTg/gCg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562710	95562710	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	46	436	0	ENST00000343455.3:c.4547A>G	p.Lys1516Arg	p.K1516R	ENST00000343455	NM_177438.2	1516	aAa/aGa																																																																															
AKT1	207	MSKCC	GRCh37	14	105243045	105243045	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	91	741	0	ENST00000349310.3:c.238T>A	p.Trp80Arg	p.W80R	ENST00000349310	NM_001014432.1	80	Tgg/Agg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43720290	43720290	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	56	531	0	ENST00000382044.4:c.3752T>C	p.Val1251Ala	p.V1251A	ENST00000382044	NM_001141980.1	1251	gTa/gCa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99473516	99473516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	26	265	0	ENST00000268035.6:c.2938T>C	p.Tyr980His	p.Y980H	ENST00000268035	NM_000875.3	980	Tac/Cac																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129647	2129647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	84	641	4	ENST00000219476.3:c.3374G>A	p.Arg1125Gln	p.R1125Q	ENST00000219476	NM_000548.3	1125	cGg/cAg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222333	2222333	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	69	661	0	ENST00000326181.6:c.617A>G	p.Asp206Gly	p.D206G	ENST00000326181	NM_032271.2	206	gAc/gGc																																																																															
NF1	4763	MSKCC	GRCh37	17	29527615	29527615	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	27	325	0	ENST00000358273.4:c.1062+2T>C		p.X354_splice	ENST00000358273	NM_001042492.2	354																																																																																
NF1	4763	MSKCC	GRCh37	17	29670154	29670154	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	22	316	0	ENST00000358273.4:c.7189+1G>A		p.X2397_splice	ENST00000358273	NM_001042492.2	2397																																																																																
STAT3	6774	MSKCC	GRCh37	17	40478163	40478163	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	76	630	1	ENST00000264657.5:c.1336T>C	p.Tyr446His	p.Y446H	ENST00000264657	NM_139276.2	446	Tat/Cat																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58678049	58678049	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	52	323	0	ENST00000305921.3:c.274T>C	p.Cys92Arg	p.C92R	ENST00000305921	NM_003620.3	92	Tgc/Cgc																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732932	74732932	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	45	353	0	ENST00000359995.5:c.311del	p.Gly104AspfsTer128	p.G104Dfs*128	ENST00000359995	NM_001195427.1	104	gGa/ga																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226299	2226299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	114	736	1	ENST00000398665.3:c.3779C>T	p.Pro1260Leu	p.P1260L	ENST00000398665	NM_032482.2	1260	cCg/cTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298069	15298069	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	99	765	0	ENST00000263388.2:c.1687A>G	p.Ile563Val	p.I563V	ENST00000263388	NM_000435.2	563	Atc/Gtc																																																																															
AKT2	208	MSKCC	GRCh37	19	40741180	40741180	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	96	619	0	ENST00000392038.2:c.1253T>C	p.Val418Ala	p.V418A	ENST00000392038	NM_001626.4	418	gTc/gCc																																																																															
AKT2	208	MSKCC	GRCh37	19	40741244	40741244	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	71	596	0	ENST00000392038.2:c.1189C>G	p.Pro397Ala	p.P397A	ENST00000392038	NM_001626.4	397	Ccc/Gcc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919024	50919024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	111	630	0	ENST00000440232.2:c.2761C>T	p.Arg921Cys	p.R921C	ENST00000440232	NM_002691.3	921	Cgc/Tgc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47635517	47635556	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATGTACTTTTTTTTTTTTTAAGGAGCAAAGAATCTGCAG	AATGTACTTTTTTTTTTTTTAAGGAGCAAAGAATCTGCAG	-			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	41	218	0	ENST00000233146.2:c.212-22_229del		p.X71_splice	ENST00000233146	NM_000251.2	71																																																																																
ERBB4	2066	MSKCC	GRCh37	2	213403197	213403197	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	85	455	0	ENST00000342788.4:c.58G>C	p.Val20Leu	p.V20L	ENST00000342788	NM_005235.2	20	Gtc/Ctc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39742743	39742743	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	77	493	2	ENST00000361337.2:c.1586T>A	p.Phe529Tyr	p.F529Y	ENST00000361337	NM_003286.2	529	tTc/tAc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164716	36164716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	78	678	2	ENST00000300305.3:c.1159G>A	p.Gly387Ser	p.G387S	ENST00000300305		387	Ggc/Agc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091746	29091746	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	18	258	1	ENST00000328354.6:c.1211A>T	p.Tyr404Phe	p.Y404F	ENST00000328354	NM_007194.3	404	tAt/tTt																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29115404	29115404	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs113947614		P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	51	466	0	ENST00000328354.6:c.662T>C	p.Ile221Thr	p.I221T	ENST00000328354	NM_007194.3	221	aTc/aCc																																																																															
ATR	545	MSKCC	GRCh37	3	142277574	142277574	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	36	462	0	ENST00000350721.4:c.1777del	p.Met593CysfsTer16	p.M593Cfs*16	ENST00000350721	NM_001184.3	593	Atg/tg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1932462	1932462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	63	696	0	ENST00000382891.5:c.1520C>T	p.Ala507Val	p.A507V	ENST00000382891	NM_133335.3	507	gCc/gTc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143181707	143181707	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	36	348	0	ENST00000262992.4:c.626T>C	p.Val209Ala	p.V209A	ENST00000262992	NM_001101669.1	209	gTa/gCa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268195	153268195	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	50	294	0	ENST00000281708.4:c.613A>G	p.Thr205Ala	p.T205A	ENST00000281708	NM_033632.3	205	Aca/Gca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541693	187541693	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	54	333	0	ENST00000441802.2:c.6047T>C	p.Ile2016Thr	p.I2016T	ENST00000441802	NM_005245.3	2016	aTc/aCc																																																																															
TERT	7015	MSKCC	GRCh37	5	1253911	1253911	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	46	547	0	ENST00000310581.5:c.3331A>T	p.Thr1111Ser	p.T1111S	ENST00000310581	NM_198253.2	1111	Acg/Tcg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31401628	31401628	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	44	484	0	ENST00000344624.3:c.4036C>G	p.Arg1346Gly	p.R1346G	ENST00000344624		1346	Cgg/Ggg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31423005	31423005	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	59	554	0	ENST00000344624.3:c.3308T>C	p.Val1103Ala	p.V1103A	ENST00000344624		1103	gTt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112179144	112179144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	27	256	0	ENST00000257430.4:c.7853A>G	p.Asn2618Ser	p.N2618S	ENST00000257430	NM_000038.5	2618	aAt/aGt																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032066	26032066	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	44	358	0	ENST00000244661.2:c.223A>G	p.Ile75Val	p.I75V	ENST00000244661	NM_003537.3	75	Atc/Gtc																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250719	26250719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	48	439	0	ENST00000446824.2:c.115C>T	p.Pro39Ser	p.P39S	ENST00000446824	NM_021018.2	39	Ccc/Tcc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117707000	117707000	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	49	538	0	ENST00000368508.3:c.2150T>C	p.Leu717Pro	p.L717P	ENST00000368508	NM_002944.2	717	cTc/cCc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012392	152012392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	34	305	2	ENST00000262189.6:c.421G>A	p.Glu141Lys	p.E141K	ENST00000262189	NM_170606.2	141	Gaa/Aaa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38194827	38194828	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	68	446	0	ENST00000317025.8:c.905dup	p.Arg303LysfsTer12	p.R303Kfs*12	ENST00000317025	NM_023034.1	302	aca/acCa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275465	38275465	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	103	638	1	ENST00000425967.3:c.1568T>C	p.Val523Ala	p.V523A	ENST00000425967	NM_001174067.1	523	gTg/gCg																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127912200	127912200	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	19	208	0	ENST00000373547.4:c.670T>C	p.Phe224Leu	p.F224L	ENST00000373547	NM_002721.4	224	Ttt/Ctt																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650389	48650389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	77	336	1	ENST00000376670.3:c.359C>T	p.Ala120Val	p.A120V	ENST00000376670	NM_002049.3	120	gCc/gTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411698	63411698	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	64	364	0	ENST00000330258.3:c.1469T>C	p.Val490Ala	p.V490A	ENST00000330258	NM_152424.3	490	gTc/gCc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247367	153247367	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	80	287	0	ENST00000281708.4:c.1435C>G	p.Arg479Gly	p.R479G	ENST00000281708	NM_033632.3	479	Cga/Gga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188134	11188134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	215	433	2	ENST00000361445.4:c.5960G>T	p.Arg1987Leu	p.R1987L	ENST00000361445	NM_004958.3	1987	cGg/cTg																																																																															
PGR	5241	MSKCC	GRCh37	11	100922197	100922197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	157	434	0	ENST00000325455.5:c.2315G>T	p.Ser772Ile	p.S772I	ENST00000325455	NM_001202474.3	772	aGt/aTt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56377305	56377305	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0027386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	115	254	0	ENST00000348428.3:c.925+1G>T		p.X309_splice	ENST00000348428	NM_006785.3	309																																																																																
BRD4	23476	MSKCC	GRCh37	19	15350207	15350207	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	425	561	0	ENST00000263377.2:c.3572A>T	p.Lys1191Ile	p.K1191I	ENST00000263377	NM_058243.2	1191	aAa/aTa																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430269	181430269	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	203	463	0	ENST00000325404.1:c.121G>C	p.Val41Leu	p.V41L	ENST00000325404	NM_003106.3	41	Gtc/Ctc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356139	66356139	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	147	439	0	ENST00000273854.3:c.1358G>T	p.Gly453Val	p.G453V	ENST00000273854	NM_004439.5	453	gGa/gTa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467590	66467590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	99	316	0	ENST00000273854.3:c.679C>A	p.Arg227Ser	p.R227S	ENST00000273854	NM_004439.5	227	Cgt/Agt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258956	153258956	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	97	234	1	ENST00000281708.4:c.859G>A	p.Glu287Lys	p.E287K	ENST00000281708	NM_033632.3	287	Gag/Aag																																																																															
SDHA	6389	MSKCC	GRCh37	5	228366	228366	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	82	323	0	ENST00000264932.6:c.688G>T	p.Glu230Ter	p.E230*	ENST00000264932	NM_004168.2	230	Gag/Tag																																																																															
TERT	7015	MSKCC	GRCh37	5	1294938	1294938	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	22	123	0	ENST00000310581.5:c.167T>A	p.Val56Glu	p.V56E	ENST00000310581	NM_198253.2	56	gTg/gAg																																																																															
STK19	8859	MSKCC	GRCh37	6	31940483	31940483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	323	592	2	ENST00000375331.2:c.516G>T	p.Arg172Ser	p.R172S	ENST00000375331	NM_004197.1	172	agG/agT																																																																															
TP53	7157	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs770776262		P-0027448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	193	820	0	ENST00000269305.4:c.321C>A	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taA																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396929	396929	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1411	145	867	0	ENST00000262320.3:c.97G>C	p.Val33Leu	p.V33L	ENST00000262320	NM_003502.3	33	Gtg/Ctg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39750387	39750388	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTAA			P-0027448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	44	522	0	ENST00000361337.2:c.2003_2006dup	p.Lys669AsnfsTer2	p.K669Nfs*2	ENST00000361337	NM_003286.2	668	gct/gCTAAct																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054648	5054648	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765286468		P-0027448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	95	424	1	ENST00000381652.3:c.700C>T	p.Arg234Cys	p.R234C	ENST00000381652	NM_004972.3	234	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	121	367	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862749	9862749	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150316865		P-0027508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	211	495	2	ENST00000330684.3:c.2554G>A	p.Val852Met	p.V852M	ENST00000330684	NM_001134407.1	852	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578232	7578234	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	AAA	AAA	-			P-0027508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	240	569	0	ENST00000269305.4:c.615_617del	p.Tyr205_Leu206delinsTer	p.Y205_L206delins*	ENST00000269305	NM_001126112.2	205	taTTTg/tag																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206649598	206649598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	114	536	0	ENST00000367120.3:c.433G>A	p.Val145Ile	p.V145I	ENST00000367120	NM_014002.3	145	Gta/Ata																																																																															
RAD50	10111	MSKCC	GRCh37	5	131939682	131939682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	114	429	0	ENST00000265335.6:c.2468G>T	p.Arg823Leu	p.R823L	ENST00000265335		823	cGa/cTa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923140	39923140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	110	557	0	ENST00000378444.4:c.3568G>A	p.Glu1190Lys	p.E1190K	ENST00000378444	NM_001123385.1	1190	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0014468-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			332	59	787	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0014468-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			237	91	872	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014468-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			189	27	660	0	ENST00000304494.5:c.247C>A	p.His83Asn	p.H83N	ENST00000304494	NM_000077.4	83	Cac/Aac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151864262	151864262	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014468-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			233	49	507	0	ENST00000262189.6:c.9719A>C	p.Gln3240Pro	p.Q3240P	ENST00000262189	NM_170606.2	3240	cAg/cCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0026622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	368	479	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	213	530	3	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111458	8111459	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	170	490	0	ENST00000346208.3:c.945dup	p.Ser316ValfsTer36	p.S316Vfs*36	ENST00000346208		315	acg/acGg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343639	118343639	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	129	453	0	ENST00000534358.1:c.1765A>G	p.Thr589Ala	p.T589A	ENST00000534358	NM_005933.3	589	Aca/Gca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	336	595	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
RB1	5925	MSKCC	GRCh37	13	48954347	48954347	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201458896		P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	150	485	0	ENST00000267163.4:c.1468G>A	p.Ala490Thr	p.A490T	ENST00000267163	NM_000321.2	490	Gct/Act																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678623	88678623	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	95	372	0	ENST00000360948.2:c.913C>A	p.Pro305Thr	p.P305T	ENST00000360948	NM_001012338.2	305	Cca/Aca																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245146	41245146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	216	688	0	ENST00000357654.3:c.2402G>T	p.Cys801Phe	p.C801F	ENST00000357654	NM_007294.3	801	tGt/tTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913324		P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	414	687	0	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600365	10600365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	390	744	0	ENST00000171111.5:c.1490G>T	p.Trp497Leu	p.W497L	ENST00000171111	NM_203500.1	497	tGg/tTg																																																																															
TP63	8626	MSKCC	GRCh37	3	189584488	189584488	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	115	453	0	ENST00000264731.3:c.784A>G	p.Ser262Gly	p.S262G	ENST00000264731	NM_003722.4	262	Agt/Ggt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286235	66286235	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	106	552	0	ENST00000273854.3:c.1451G>T	p.Ser484Ile	p.S484I	ENST00000273854	NM_004439.5	484	aGc/aTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111429	56111429	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	67	293	0	ENST00000399503.3:c.29C>G	p.Ser10Trp	p.S10W	ENST00000399503	NM_005921.1	10	tCg/tGg																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997696	149997696	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	108	386	0	ENST00000253339.5:c.2771G>T	p.Arg924Leu	p.R924L	ENST00000253339		924	cGa/cTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449760	8449760	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	157	573	1	ENST00000356435.5:c.3953C>A	p.Pro1318His	p.P1318H	ENST00000356435		1318	cCt/cAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041259	47041259	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	202	375	0	ENST00000329236.7:c.1453C>T	p.Gln485Ter	p.Q485*	ENST00000329236	NM_001204466.1	485	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	65	365	0	ENST00000324856.7:c.3977dupC	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180051053	180051053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	53	452	0	ENST00000261937.6:c.1430G>A	p.Arg477Gln	p.R477Q	ENST00000261937	NM_182925.4	477	cGg/cAg																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	86	357	2	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562850	21562850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	49	635	2	ENST00000382592.4:c.1069G>A	p.Val357Met	p.V357M	ENST00000382592	NM_014572.2	357	Gtg/Atg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132438	11132438	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794284		P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	133	542	1	ENST00000358026.2:c.2654G>A	p.Arg885His	p.R885H	ENST00000358026	NM_001128849.1	885	cGc/cAc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968322	2968323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	78	480	2	ENST00000396946.4:c.1663dupC	p.Arg555ProfsTer38	p.R555Pfs*38	ENST00000396946	NM_032415.4	555	cgg/cCgg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	125	430	1	ENST00000264010.4:c.2070delA	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	32	455	1	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277275	41277275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	75	309	0	ENST00000349496.5:c.1744C>T	p.Arg582Trp	p.R582W	ENST00000349496	NM_001904.3	582	Cgg/Tgg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39644789	39644789	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	30	299	0	ENST00000262039.4:c.2522del	p.Lys841ArgfsTer8	p.K841Rfs*8	ENST00000262039	NM_002647.2	840	Aaa/aa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954272	32954273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs886038189		P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	71	362	2	ENST00000380152.3:c.9253dup	p.Thr3085AsnfsTer26	p.T3085Nfs*26	ENST00000380152		3082	-/A																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	116	526	4	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81941311	81941311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	99	536	0	ENST00000359376.3:c.1489G>A	p.Ala497Thr	p.A497T	ENST00000359376	NM_002661.3	497	Gcc/Acc																																																																															
B2M	567	MSKCC	GRCh37	15	45003813	45003813	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	114	315	0	ENST00000558401.1:c.67+2T>C		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
TSC1	7248	MSKCC	GRCh37	9	135785963	135785964	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	98	516	0	ENST00000298552.3:c.1257dupC	p.Arg420GlnfsTer22	p.R420Qfs*22	ENST00000298552	NM_001162426.1	419	-/C																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	98	325	2	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
FANCC	2176	MSKCC	GRCh37	9	97873817	97873817	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	300	533	5	ENST00000289081.3:c.1257del	p.Thr420ArgfsTer27	p.T420Rfs*27	ENST00000289081	NM_000136.2	419	ccC/cc																																																																															
MED12	9968	MSKCC	GRCh37	X	70349689	70349689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	104	412	1	ENST00000374080.3:c.3851G>A	p.Arg1284His	p.R1284H	ENST00000374080		1284	cGc/cAc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	206	565	5	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027087	71027087	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	46	407	0	ENST00000318789.4:c.1240delC	p.Leu414Ter	p.L414*	ENST00000318789	NM_032682.5	414	Ctg/tg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48028225	48028225	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63749999		P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	21	327	0	ENST00000234420.5:c.3103C>T	p.Arg1035Ter	p.R1035*	ENST00000234420	NM_000179.2	1035	Cga/Tga																																																																															
IRF4	3662	MSKCC	GRCh37	6	401637	401637	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	89	441	0	ENST00000380956.4:c.963delC	p.Asp322ThrfsTer62	p.D322Tfs*62	ENST00000380956	NM_001195286.1	320	gCc/gc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120037	70120037	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	10	62	0	ENST00000245479.2:c.1039C>T	p.Gln347Ter	p.Q347*	ENST00000245479	NM_000346.3	347	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119909	70119910	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	90	485	0	ENST00000245479.2:c.916dup	p.Val306GlyfsTer272	p.V306Gfs*272	ENST00000245479	NM_000346.3	304	ccg/ccGg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527808	157527808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	66	338	0	ENST00000346085.5:c.5533C>T	p.Arg1845Cys	p.R1845C	ENST00000346085	NM_020732.3	1845	Cgc/Tgc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393401	139393401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	351	609	0	ENST00000277541.6:c.6130G>A	p.Ala2044Thr	p.A2044T	ENST00000277541	NM_017617.3	2044	Gca/Aca																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626865	14626865	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	142	514	0	ENST00000254322.2:c.910del	p.Leu304SerfsTer17	p.L304Sfs*17	ENST00000254322	NM_006145.1	304	Ctc/tc																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366987	40366987	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	96	573	0	ENST00000397332.2:c.210del	p.Thr71ArgfsTer69	p.T71Rfs*69	ENST00000397332	NM_001033082.2	70	ccC/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443617	49443617	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	126	547	0	ENST00000301067.7:c.3754C>T	p.Arg1252Ter	p.R1252*	ENST00000301067	NM_003482.3	1252	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	123	497	0	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021277	31021277	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	120	407	2	ENST00000375687.4:c.1281del	p.Lys427AsnfsTer35	p.K427Nfs*35	ENST00000375687	NM_015338.5	426	Aaa/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434005	49434005	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	126	611	1	ENST00000301067.7:c.7548del	p.Asn2517IlefsTer26	p.N2517Ifs*26	ENST00000301067	NM_003482.3	2516	ccC/cc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816451	32816451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	95	602	2	ENST00000354258.4:c.1724G>A	p.Arg575His	p.R575H	ENST00000354258	NM_000593.5	575	cGc/cAc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784996	9784996	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	21	350	0	ENST00000377346.4:c.2997+2T>C		p.X999_splice	ENST00000377346	NM_005026.3	999																																																																																
MUTYH	4595	MSKCC	GRCh37	1	45797196	45797196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	38	598	0	ENST00000372115.3:c.1177G>A	p.Val393Met	p.V393M	ENST00000372115	NM_001048171.1	393	Gtg/Atg																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117690383	117690383	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	126	431	0	ENST00000369458.3:c.746G>T	p.Ser249Ile	p.S249I	ENST00000369458	NM_024626.3	249	aGt/aTt																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112760224	112760224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	38	457	0	ENST00000369452.4:c.893C>T	p.Ala298Val	p.A298V	ENST00000369452	NM_007373.3	298	gCa/gTa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375506	118375507	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	20	247	0	ENST00000534358.1:c.8904dup	p.Ser2969IlefsTer6	p.S2969Ifs*6	ENST00000534358	NM_005933.3	2967	gaa/gAaa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972530	32972530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	104	427	0	ENST00000380152.3:c.9880G>T	p.Ala3294Ser	p.A3294S	ENST00000380152		3294	Gca/Tca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972852	32972852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	85	303	0	ENST00000380152.3:c.10202C>T	p.Thr3401Met	p.T3401M	ENST00000380152		3401	aCg/aTg																																																																															
AKT1	207	MSKCC	GRCh37	14	105243026	105243026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	162	626	1	ENST00000349310.3:c.257G>A	p.Arg86His	p.R86H	ENST00000349310	NM_001014432.1	86	cGc/cAc																																																																															
B2M	567	MSKCC	GRCh37	15	45007777	45007778	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	25	371	0	ENST00000558401.1:c.227dup	p.Ser77GlnfsTer13	p.S77Qfs*13	ENST00000558401	NM_004048.2	75	tct/tcTt																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2094717	2094717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	112	605	2	ENST00000219066.1:c.463C>T	p.Arg155Trp	p.R155W	ENST00000219066	NM_002528.5	155	Cgg/Tgg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640073	3640073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	49	696	0	ENST00000294008.3:c.3566G>A	p.Cys1189Tyr	p.C1189Y	ENST00000294008	NM_032444.2	1189	tGt/tAt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3808031	3808031	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	63	318	0	ENST00000262367.5:c.3388A>G	p.Lys1130Glu	p.K1130E	ENST00000262367	NM_004380.2	1130	Aag/Gag																																																																															
EZH1	2145	MSKCC	GRCh37	17	40858038	40858038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	159	437	0	ENST00000428826.2:c.1826G>A	p.Arg609His	p.R609H	ENST00000428826		609	cGt/cAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438222	56438223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	195	491	0	ENST00000407977.2:c.770dup	p.Glu258Ter	p.E258*	ENST00000407977		257	ggt/ggGt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63553975	63553976	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	249	409	0	ENST00000307078.5:c.763_764del	p.Leu255GlufsTer13	p.L255Efs*13	ENST00000307078	NM_004655.3	255	CTg/g																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250767	10250767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	167	622	1	ENST00000340748.4:c.3713G>A	p.Arg1238His	p.R1238H	ENST00000340748		1238	cGc/cAc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355347	15355347	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	20	369	0	ENST00000263377.2:c.2276del	p.Pro759ArgfsTer35	p.P759Rfs*35	ENST00000263377	NM_058243.2	759	cCg/cg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965716	18965716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	157	677	0	ENST00000262803.5:c.1294del	p.Val432TrpfsTer22	p.V432Wfs*22	ENST00000262803	NM_002911.3	432	Gtg/tg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212545	36212545	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	69	658	1	ENST00000222270.7:c.2296C>A	p.Pro766Thr	p.P766T	ENST00000222270	NM_014727.1	766	Cca/Aca																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082398	16082398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	51	673	0	ENST00000281043.3:c.212G>A	p.Ser71Asn	p.S71N	ENST00000281043	NM_005378.4	71	aGc/aAc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48028216	48028216	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	87	341	0	ENST00000234420.5:c.3094T>C	p.Cys1032Arg	p.C1032R	ENST00000234420	NM_000179.2	1032	Tgc/Cgc																																																																															
BARD1	580	MSKCC	GRCh37	2	215610467	215610468	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	90	353	0	ENST00000260947.4:c.1788dup	p.Tyr597IlefsTer3	p.Y597Ifs*3	ENST00000260947	NM_000465.2	596	-/A																																																																															
INHA	3623	MSKCC	GRCh37	2	220439860	220439860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	42	599	0	ENST00000243786.2:c.713C>A	p.Ser238Tyr	p.S238Y	ENST00000243786	NM_002191.3	238	tCc/tAc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375211	31375211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	127	592	0	ENST00000328111.2:c.608C>A	p.Pro203Gln	p.P203Q	ENST00000328111	NM_006892.3	203	cCg/cAg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130433	29130433	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	150	531	0	ENST00000328354.6:c.277del	p.Trp93GlyfsTer17	p.W93Gfs*17	ENST00000328354	NM_007194.3	93	Tgg/gg																																																																															
NF2	4771	MSKCC	GRCh37	22	30069392	30069394	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	34	505	0	ENST00000338641.4:c.1264_1266del	p.Glu422del	p.E422del	ENST00000338641	NM_000268.3	419	acGGAg/acg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919194	178919194	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	29	224	0	ENST00000263967.3:c.685del	p.Thr229LeufsTer11	p.T229Lfs*11	ENST00000263967	NM_006218.2	227	Aaa/aa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509912	187509913	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	68	271	0	ENST00000441802.2:c.13600_13601del	p.Ser4534HisfsTer14	p.S4534Hfs*14	ENST00000441802	NM_005245.3	4534	AGc/c																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521375	187521375	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	29	364	0	ENST00000441802.2:c.11780T>C	p.Leu3927Pro	p.L3927P	ENST00000441802	NM_005245.3	3927	cTa/cCa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950066	38950066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	62	353	0	ENST00000357387.3:c.3884C>T	p.Thr1295Met	p.T1295M	ENST00000357387	NM_152756.3	1295	aCg/aTg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564441	86564441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	33	456	0	ENST00000274376.6:c.173C>T	p.Ala58Val	p.A58V	ENST00000274376	NM_002890.2	58	gCt/gTt																																																																															
FYN	2534	MSKCC	GRCh37	6	112015875	112015875	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	110	398	0	ENST00000368678.4:c.1066G>T	p.Gly356Ter	p.G356*	ENST00000368678		356	Gga/Tga																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004679	150004679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	29	357	0	ENST00000253339.5:c.1546C>T	p.His516Tyr	p.H516Y	ENST00000253339		516	Cac/Tac																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157470043	157470043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	22	292	0	ENST00000346085.5:c.2837C>T	p.Ala946Val	p.A946V	ENST00000346085	NM_020732.3	946	gCc/gTc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371843	55371843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	53	234	0	ENST00000297316.4:c.533G>A	p.Gly178Asp	p.G178D	ENST00000297316	NM_022454.3	178	gGc/gAc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737082	145737082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	31	534	0	ENST00000428558.2:c.3484C>T	p.Arg1162Cys	p.R1162C	ENST00000428558	NM_004260.3	1162	Cgc/Tgc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402583	139402583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	148	593	3	ENST00000277541.6:c.3334G>A	p.Val1112Ile	p.V1112I	ENST00000277541	NM_017617.3	1112	Gtt/Att																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139818432	139818432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	39	467	0	ENST00000247668.2:c.1267C>T	p.Arg423Trp	p.R423W	ENST00000247668	NM_021138.3	423	Cgg/Tgg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921999	39921999	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	106	442	0	ENST00000378444.4:c.4173G>T	p.Lys1391Asn	p.K1391N	ENST00000378444	NM_001123385.1	1391	aaG/aaT																																																																															
AR	367	MSKCC	GRCh37	X	66863148	66863148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	124	513	0	ENST00000374690.3:c.1667C>T	p.Pro556Leu	p.P556L	ENST00000374690	NM_000044.3	556	cCc/cTc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161392	55161392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	97	417	0	ENST00000257290.5:c.3223G>A	p.Asp1075Asn	p.D1075N	ENST00000257290	NM_006206.4	1075	Gac/Aac																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	153	434	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	305	593	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584514	48584514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	142	343	0	ENST00000342988.3:c.692delG	p.Gly231AlafsTer10	p.G231Afs*10	ENST00000342988	NM_005359.5	229	ctG/ct																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	123	423	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070349	37070349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1220422495		P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	115	449	2	ENST00000231790.2:c.1489del	p.Arg497GlyfsTer11	p.R497Gfs*11	ENST00000231790	NM_000249.3	495	aCc/ac																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	91	256	3	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	186	607	2	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	117	333	4	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	68	257	3	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857524	9857524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	89	392	1	ENST00000330684.3:c.3877G>A	p.Asp1293Asn	p.D1293N	ENST00000330684	NM_001134407.1	1293	Gat/Aat																																																																															
MPL	4352	MSKCC	GRCh37	1	43814539	43814539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	131	396	0	ENST00000372470.3:c.1334G>A	p.Arg445Gln	p.R445Q	ENST00000372470	NM_005373.2	445	cGa/cAa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46256341	46256341	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	157	467	0	ENST00000371998.3:c.574del	p.Ser192AlafsTer9	p.S192Afs*9	ENST00000371998		190	cAa/ca																																																																															
PMS2	5395	MSKCC	GRCh37	7	6031648	6031648	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116314131		P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	176	465	1	ENST00000265849.7:c.944G>A	p.Arg315Gln	p.R315Q	ENST00000265849	NM_000535.5	315	cGa/cAa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9547004	9547004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	53	235	0	ENST00000353224.5:c.1018C>T	p.Leu340Phe	p.L340F	ENST00000353224	NM_177990.2	340	Ctc/Ttc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6043349	6043349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	60	201	0	ENST00000265849.7:c.325del	p.Glu109LysfsTer3	p.E109Kfs*3	ENST00000265849	NM_000535.5	109	Gaa/aa																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981721	101981721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	70	277	1	ENST00000282441.5:c.147del	p.Ala50ProfsTer24	p.A50Pfs*24	ENST00000282441	NM_001130145.2	48	Ccc/cc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274304	5274304	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	198	614	0	ENST00000357368.4:c.143del	p.Gly48ValfsTer17	p.G48Vfs*17	ENST00000357368	NM_002850.3	48	gGt/gt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933594	39933594	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	88	486	0	ENST00000378444.4:c.1005del	p.Ser336ArgfsTer42	p.S336Rfs*42	ENST00000378444	NM_001123385.1	335	ccC/cc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251949	153251949	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	177	490	0	ENST00000281708.4:c.1057delA	p.Ser353ValfsTer24	p.S353Vfs*24	ENST00000281708	NM_033632.3	353	Agt/gt																																																																															
CASP8	841	MSKCC	GRCh37	2	202151310	202151310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	147	391	0	ENST00000358485.4:c.1610C>T	p.Ser537Phe	p.S537F	ENST00000358485	NM_001080125.1	537	tCt/tTt																																																																															
ABL1	25	MSKCC	GRCh37	9	133738351	133738351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	175	497	1	ENST00000318560.5:c.751G>T	p.Gly251Cys	p.G251C	ENST00000318560	NM_005157.4	251	Ggc/Tgc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453399	40453399	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs759027671		P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	231	777	12	ENST00000345506.4:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000345506	NM_003152.3	366	Ccc/cc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429367	78429367	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	169	403	1	ENST00000370768.2:c.1075C>T	p.Arg359Ter	p.R359*	ENST00000370768	NM_003902.3	359	Cga/Tga																																																																															
NUF2	83540	MSKCC	GRCh37	1	163317707	163317707	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	102	392	0	ENST00000271452.3:c.1103A>G	p.Gln368Arg	p.Q368R	ENST00000271452	NM_145697.2	368	cAa/cGa																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981596	101981596	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	81	269	0	ENST00000282441.5:c.17A>C	p.Gln6Pro	p.Q6P	ENST00000282441	NM_001130145.2	6	cAg/cCg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376673	118376673	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	151	477	0	ENST00000534358.1:c.10066A>G	p.Thr3356Ala	p.T3356A	ENST00000534358	NM_005933.3	3356	Aca/Gca																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111884931	111884931	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	39	429	0	ENST00000341259.2:c.929T>C	p.Leu310Pro	p.L310P	ENST00000341259	NM_005475.2	310	cTg/cCg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912742	32912743	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	113	349	0	ENST00000380152.3:c.4253_4254del	p.Ile1418LysfsTer4	p.I1418Kfs*4	ENST00000380152		1417	aAT/a																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060738	38060738	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	253	829	2	ENST00000250448.2:c.1251C>A	p.Phe417Leu	p.F417L	ENST00000250448	NM_004496.3	417	ttC/ttA																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645054	67645054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	174	548	0	ENST00000264010.4:c.319C>T	p.Pro107Ser	p.P107S	ENST00000264010	NM_006565.3	107	Ccc/Tcc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81892753	81892753	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	130	362	0	ENST00000359376.3:c.464A>G	p.Gln155Arg	p.Q155R	ENST00000359376	NM_002661.3	155	cAa/cGa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89352037	89352037	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138353708		P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	199	603	1	ENST00000301030.4:c.913G>A	p.Ala305Thr	p.A305T	ENST00000301030	NM_001256183.1	305	Gca/Aca																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866098	37866098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	96	625	0	ENST00000269571.5:c.607C>T	p.Arg203Cys	p.R203C	ENST00000269571		203	Cgc/Tgc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492764	56492764	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	206	644	0	ENST00000407977.2:c.175G>T	p.Gly59Ter	p.G59*	ENST00000407977		59	Gga/Tga																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10254505	10254505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	163	504	0	ENST00000340748.4:c.3005C>A	p.Pro1002His	p.P1002H	ENST00000340748		1002	cCc/cAc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17946749	17946749	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	226	679	0	ENST00000458235.1:c.1898A>G	p.Tyr633Cys	p.Y633C	ENST00000458235	NM_000215.3	633	tAc/tGc																																																																															
ERF	2077	MSKCC	GRCh37	19	42752694	42752695	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	153	628	0	ENST00000222329.4:c.1569dup	p.Pro524AlafsTer10	p.P524Afs*10	ENST00000222329	NM_006494.2	523	-/G																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164678	47164678	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	97	282	0	ENST00000409792.3:c.1448T>C	p.Leu483Pro	p.L483P	ENST00000409792	NM_014159.6	483	cTa/cCa																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799565	72799565	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	89	507	0	ENST00000325599.8:c.1604C>A	p.Ser535Tyr	p.S535Y	ENST00000325599	NM_018130.2	535	tCt/tAt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89462366	89462366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	149	586	0	ENST00000336596.2:c.1838C>T	p.Ala613Val	p.A613V	ENST00000336596	NM_005233.5	613	gCc/gTc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911580	134911580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	73	503	0	ENST00000398015.3:c.2045G>A	p.Arg682His	p.R682H	ENST00000398015	NM_004441.4	682	cGc/cAc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748294	41748294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	63	725	3	ENST00000226382.2:c.475G>A	p.Ala159Thr	p.A159T	ENST00000226382	NM_003924.3	159	Gca/Aca																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143066999	143066999	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	77	305	1	ENST00000262992.4:c.1714C>A	p.Pro572Thr	p.P572T	ENST00000262992	NM_001101669.1	572	Cca/Aca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187535408	187535408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	140	448	1	ENST00000441802.2:c.9166G>A	p.Ala3056Thr	p.A3056T	ENST00000441802	NM_005245.3	3056	Gct/Act																																																																															
E2F3	1871	MSKCC	GRCh37	6	20481473	20481473	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138776759		P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	45	313	0	ENST00000346618.3:c.542C>T	p.Thr181Met	p.T181M	ENST00000346618	NM_001949.4	181	aCg/aTg																																																																															
FYN	2534	MSKCC	GRCh37	6	112017558	112017558	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	131	451	0	ENST00000368678.4:c.955A>G	p.Lys319Glu	p.K319E	ENST00000368678		319	Aag/Gag																																																																															
EZH2	2146	MSKCC	GRCh37	7	148513817	148513817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	140	415	0	ENST00000320356.2:c.1464G>T	p.Glu488Asp	p.E488D	ENST00000320356	NM_004456.4	488	gaG/gaT																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540207	23540207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	165	477	1	ENST00000380871.4:c.196C>T	p.Arg66Cys	p.R66C	ENST00000380871	NM_006167.3	66	Cgc/Tgc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981857	70981857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	152	649	0	ENST00000276594.2:c.239C>T	p.Pro80Leu	p.P80L	ENST00000276594	NM_024504.3	80	cCg/cTg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117866605	117866605	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	155	482	0	ENST00000297338.2:c.1040T>A	p.Ile347Asn	p.I347N	ENST00000297338	NM_006265.2	347	aTt/aAt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923729	39923729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	205	652	0	ENST00000378444.4:c.3362C>T	p.Ala1121Val	p.A1121V	ENST00000378444	NM_001123385.1	1121	gCc/gTc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	137	595	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15827432	15827432	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	95	448	0	ENST00000307771.7:c.548T>G	p.Phe183Cys	p.F183C	ENST00000307771	NM_005089.3	183	tTt/tGt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	221	540	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	218	513	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	537	625	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
CASP8	841	MSKCC	GRCh37	2	202151289	202151290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	73	522	0	ENST00000358485.4:c.1596dupA	p.Leu533ThrfsTer6	p.L533Tfs*6	ENST00000358485	NM_001080125.1	530	aga/agAa																																																																															
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	157	368	0	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	199	460	6	ENST00000303115.3:c.361delA	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	196	537	2	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	362	776	3	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243668598	243668598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	214	512	0	ENST00000263826.5:c.1393C>T	p.Arg465Trp	p.R465W	ENST00000263826	NM_005465.4	465	Cgg/Tgg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61729435	61729435	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	69	538	2	ENST00000401558.2:c.312del	p.Lys104AsnfsTer17	p.K104Nfs*17	ENST00000401558	NM_003400.3	104	aaA/aa																																																																															
PARK2	5071	MSKCC	GRCh37	6	161781122	161781122	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	277	502	0	ENST00000366898.1:c.1283delA	p.Asn428MetfsTer7	p.N428Mfs*7	ENST00000366898	NM_004562.2	428	aAt/at																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39629562	39629562	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	162	432	0	ENST00000262039.4:c.2260del	p.Thr754GlnfsTer7	p.T754Qfs*7	ENST00000262039	NM_002647.2	752	acA/ac																																																																															
EZH2	2146	MSKCC	GRCh37	7	148516773	148516773	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	137	293	0	ENST00000320356.2:c.914A>G	p.His305Arg	p.H305R	ENST00000320356	NM_004456.4	305	cAt/cGt																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589698	69589698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	89	208	1	ENST00000168712.1:c.155C>T	p.Ala52Val	p.A52V	ENST00000168712	NM_002007.2	52	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7572991	7572991	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	110	470	0	ENST00000269305.4:c.1118delA	p.Lys373ArgfsTer49	p.K373Rfs*49	ENST00000269305	NM_001126112.2	373	aAg/ag																																																																															
SUFU	51684	MSKCC	GRCh37	10	104263974	104263974	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	180	392	0	ENST00000369902.3:c.71delC	p.Pro24ArgfsTer72	p.P24Rfs*72	ENST00000369902	NM_016169.3	22	gCc/gc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993014	72993014	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	390	934	0	ENST00000268489.5:c.1031del	p.Asn344ThrfsTer8	p.N344Tfs*8	ENST00000268489	NM_006885.3	344	aAc/ac																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	325	790	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	361	924	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610561	10610561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	326	707	1	ENST00000171111.5:c.149G>A	p.Arg50His	p.R50H	ENST00000171111	NM_203500.1	50	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1140	181	797	2	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740376	58740376	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1064797099		P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	200	464	0	ENST00000305921.3:c.1281G>A	p.Trp427Ter	p.W427*	ENST00000305921	NM_003620.3	427	tgG/tgA																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599970	10599970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	340	831	4	ENST00000171111.5:c.1606C>T	p.Arg536Cys	p.R536C	ENST00000171111	NM_203500.1	536	Cgc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	266	645	6	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																															
SMO	6608	MSKCC	GRCh37	7	128829014	128829014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	52	98	0	ENST00000249373.3:c.22C>T	p.Arg8Trp	p.R8W	ENST00000249373	NM_005631.4	8	Cgg/Tgg																																																																															
TEK	7010	MSKCC	GRCh37	9	27168574	27168576	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	310	637	0	ENST00000380036.4:c.453_455del	p.Glu151del	p.E151del	ENST00000380036	NM_000459.3	149	aAAGaa/aaa																																																																															
SDHB	6390	MSKCC	GRCh37	1	17350485	17350485	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	320	675	0	ENST00000375499.3:c.625C>G	p.Pro209Ala	p.P209A	ENST00000375499	NM_003000.2	209	Cct/Gct																																																																															
FH	2271	MSKCC	GRCh37	1	241675283	241675283	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	182	429	0	ENST00000366560.3:c.539A>G	p.His180Arg	p.H180R	ENST00000366560	NM_000143.3	180	cAt/cGt																																																																															
TET1	80312	MSKCC	GRCh37	10	70451522	70451522	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	126	718	0	ENST00000373644.4:c.6362C>G	p.Ser2121Cys	p.S2121C	ENST00000373644	NM_030625.2	2121	tCc/tGc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343529	118343529	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	141	420	1	ENST00000534358.1:c.1660del	p.Gln554SerfsTer13	p.Q554Sfs*13	ENST00000534358	NM_005933.3	552	gCc/gc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233172	46233172	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376273452		P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	161	369	1	ENST00000334344.6:c.1391C>T	p.Ala464Val	p.A464V	ENST00000334344	NM_152641.2	464	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431961	49431962	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1173	89	825	0	ENST00000301067.7:c.9177_9178del	p.Asp3061GlnfsTer7	p.D3061Qfs*7	ENST00000301067	NM_003482.3	3059	acTGgg/acgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444363	49444363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	103	728	2	ENST00000301067.7:c.3008del	p.Pro1003HisfsTer14	p.P1003Hfs*14	ENST00000301067	NM_003482.3	1003	cCa/ca																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240165	41240165	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	97	186	0	ENST00000379561.5:c.185C>A	p.Ser62Ter	p.S62*	ENST00000379561	NM_002015.3	62	tCg/tAg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987219	36987219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	278	699	0	ENST00000354822.5:c.470G>A	p.Arg157His	p.R157H	ENST00000354822	NM_001079668.2	157	cGc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3828771	3828771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	260	649	1	ENST00000262367.5:c.1871G>A	p.Arg624His	p.R624H	ENST00000262367	NM_004380.2	624	cGc/cAc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533766	63533766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	247	534	1	ENST00000307078.5:c.1388G>A	p.Arg463His	p.R463H	ENST00000307078	NM_004655.3	463	cGc/cAc																																																																															
YES1	7525	MSKCC	GRCh37	18	742983	742983	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	204	524	0	ENST00000314574.4:c.995T>C	p.Leu332Pro	p.L332P	ENST00000314574	NM_005433.3	332	cTt/cCt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214724	5214724	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	199	629	0	ENST00000357368.4:c.4342A>G	p.Asn1448Asp	p.N1448D	ENST00000357368	NM_002850.3	1448	Aat/Gat																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18277088	18277088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	304	577	0	ENST00000222254.8:c.1535A>G	p.Glu512Gly	p.E512G	ENST00000222254	NM_005027.3	512	gAg/gGg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36209065	36209065	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	90	170	0	ENST00000222270.7:c.145del	p.Arg49AlafsTer118	p.R49Afs*118	ENST00000222270	NM_014727.1	49	Cgc/gc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212189	36212189	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	272	627	0	ENST00000222270.7:c.1940T>C	p.Leu647Pro	p.L647P	ENST00000222270	NM_014727.1	647	cTt/cCt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48028289	48028289	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	149	373	0	ENST00000234420.5:c.3167T>C	p.Val1056Ala	p.V1056A	ENST00000234420	NM_000179.2	1056	gTg/gCg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662767	227662767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	340	709	0	ENST00000305123.5:c.688G>A	p.Val230Met	p.V230M	ENST00000305123	NM_005544.2	230	Gtg/Atg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24159067	24159067	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	234	543	0	ENST00000263121.7:c.739T>C	p.Ser247Pro	p.S247P	ENST00000263121	NM_003073.3	247	Tcc/Ccc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713851	30713853	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	271	683	0	ENST00000359013.4:c.1255_1257del	p.Cys419del	p.C419del	ENST00000359013	NM_001024847.2	417	acCTGc/acc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430228	181430228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	244	490	0	ENST00000325404.1:c.80C>T	p.Ala27Val	p.A27V	ENST00000325404	NM_003106.3	27	gCg/gTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628581	187628581	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	346	731	1	ENST00000441802.2:c.2401C>T	p.Gln801Ter	p.Q801*	ENST00000441802	NM_005245.3	801	Cag/Tag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31493328	31493328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	175	401	0	ENST00000344624.3:c.1828G>A	p.Ala610Thr	p.A610T	ENST00000344624		610	Gcc/Acc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871249	35871249	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	225	541	0	ENST00000303115.3:c.471G>T	p.Lys157Asn	p.K157N	ENST00000303115	NM_002185.3	157	aaG/aaT																																																																															
APC	324	MSKCC	GRCh37	5	112151265	112151265	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	182	377	0	ENST00000257430.4:c.908G>T	p.Arg303Met	p.R303M	ENST00000257430	NM_000038.5	303	aGg/aTg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196093	138196093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	166	351	0	ENST00000237289.4:c.407G>A	p.Arg136His	p.R136H	ENST00000237289	NM_001270507.1	136	cGc/cAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509879	106509879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	271	661	0	ENST00000359195.3:c.1873G>A	p.Gly625Arg	p.G625R	ENST00000359195	NM_002649.2	625	Ggg/Agg																																																																															
MET	4233	MSKCC	GRCh37	7	116417506	116417506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	146	346	1	ENST00000397752.3:c.3323C>T	p.Ala1108Val	p.A1108V	ENST00000397752	NM_000245.2	1108	gCt/gTt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231381	98231382	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	96	542	0	ENST00000331920.6:c.1901_1902del	p.His634ArgfsTer19	p.H634Rfs*19	ENST00000331920	NM_000264.3	634	cAC/c																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772972	135772972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	110	292	0	ENST00000298552.3:c.2651A>G	p.Tyr884Cys	p.Y884C	ENST00000298552	NM_001162426.1	884	tAt/tGt																																																																															
AR	367	MSKCC	GRCh37	X	66863121	66863122	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTGCCC			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	85	607	0	ENST00000374690.3:c.1641_1647dup	p.Ile550PhefsTer4	p.I550Ffs*4	ENST00000374690	NM_000044.3	547	gtt/gtTTTGCCCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0027442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	156	468	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0027442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	89	410	2	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933047	39933047	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	39	359	2	ENST00000378444.4:c.1552G>T	p.Glu518Ter	p.E518*	ENST00000378444	NM_001123385.1	518	Gaa/Taa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259044	89259044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	108	260	0	ENST00000336596.2:c.188C>A	p.Thr63Lys	p.T63K	ENST00000336596	NM_005233.5	63	aCa/aAa																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987025	36987025	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	369	556	0	ENST00000354822.5:c.664G>T	p.Glu222Ter	p.E222*	ENST00000354822	NM_001079668.2	222	Gag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023145	27023162	+	inframe_deletion	In_Frame_Del	DEL	GCGGCGGCGGAGCCGGCA	GCGGCGGCGGAGCCGGCA	-			P-0027442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	108	123	2	ENST00000324856.7:c.261_278del	p.Ala88_Gly93del	p.A88_G93del	ENST00000324856	NM_006015.4	84	gGCGGCGGCGGAGCCGGCAgc/ggc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575193	48575193	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	97	329	0	ENST00000342988.3:c.387T>G	p.Asn129Lys	p.N129K	ENST00000342988	NM_005359.5	129	aaT/aaG																																																																															
MSH6	2956	MSKCC	GRCh37	2	48028024	48028029	+	inframe_deletion	In_Frame_Del	DEL	GTCTAT	GTCTAT	-			P-0027442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	124	321	0	ENST00000234420.5:c.2902_2907del	p.Val968_Tyr969del	p.V968_Y969del	ENST00000234420	NM_000179.2	968	GTCTAT/-																																																																															
TERT	7015	MSKCC	GRCh37	5	1295045	1295045	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	46	198	0	ENST00000310581.5:c.60G>T	p.Glu20Asp	p.E20D	ENST00000310581	NM_198253.2	20	gaG/gaT																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858188	27858188	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	104	496	1	ENST00000359303.2:c.383C>A	p.Ala128Glu	p.A128E	ENST00000359303	NM_003535.2	128	gCg/gAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0027487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	307	381	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
ATM	472	MSKCC	GRCh37	11	108213985	108213985	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	123	310	0	ENST00000278616.4:c.8305T>C	p.Trp2769Arg	p.W2769R	ENST00000278616	NM_000051.3	2769	Tgg/Cgg																																																																															
APC	324	MSKCC	GRCh37	5	112173283	112173284	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0027487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	83	183	0	ENST00000257430.4:c.1993_1994delTT	p.Leu665IlefsTer8	p.L665Ifs*8	ENST00000257430	NM_000038.5	664	acTTta/acta																																																																															
APC	324	MSKCC	GRCh37	5	112175745	112175746	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGATACTTTATTACATTTTGCCACAGAAAGTACTCCAGATGGAT			P-0027487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	32	235	0	ENST00000257430.4:c.4478_4479insAGAAAGTACTCCAGATGGATTGATACTTTATTACATTTTGCCAC	p.Phe1500LeufsTer22	p.F1500Lfs*22	ENST00000257430	NM_000038.5	1485	gct/gcTGATACTTTATTACATTTTGCCACAGAAAGTACTCCAGATGGATt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638783	176638783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	257	569	0	ENST00000439151.2:c.3383C>T	p.Ser1128Phe	p.S1128F	ENST00000439151	NM_022455.4	1128	tCt/tTt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190344	32190344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146490163		P-0027487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	182	575	1	ENST00000375023.3:c.395G>A	p.Arg132His	p.R132H	ENST00000375023	NM_004557.3	132	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	255	422	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371785	55371785	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	227	221	0	ENST00000297316.4:c.475C>A	p.Leu159Met	p.L159M	ENST00000297316	NM_022454.3	159	Ctg/Atg																																																																															
ATM	472	MSKCC	GRCh37	11	108099912	108099912	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	142	206	0	ENST00000278616.4:c.193C>T	p.Gln65Ter	p.Q65*	ENST00000278616	NM_000051.3	65	Cag/Tag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420330	88420330	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	84	365	0	ENST00000360948.2:c.2356G>T	p.Gly786Cys	p.G786C	ENST00000360948	NM_001012338.2	786	Ggt/Tgt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9525075	9525075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	138	529	0	ENST00000353224.5:c.1810G>T	p.Val604Phe	p.V604F	ENST00000353224	NM_177990.2	604	Gtt/Ttt																																																																															
SRC	6714	MSKCC	GRCh37	20	36022660	36022660	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	127	569	0	ENST00000358208.4:c.533G>T	p.Arg178Leu	p.R178L	ENST00000358208		178	cGa/cTa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176665385	176665385	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	210	307	0	ENST00000439151.2:c.4069G>C	p.Ala1357Pro	p.A1357P	ENST00000439151	NM_022455.4	1357	Gct/Cct																																																																															
FYN	2534	MSKCC	GRCh37	6	111995788	111995788	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	149	380	0	ENST00000368678.4:c.1310A>T	p.Tyr437Phe	p.Y437F	ENST00000368678		437	tAc/tTc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984016	2984016	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	266	474	0	ENST00000396946.4:c.514G>T	p.Glu172Ter	p.E172*	ENST00000396946	NM_032415.4	172	Gag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970999	21971450	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCTCAGCCAGGTCCACGGGCAGACGGCCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTG	TCCTCAGCCAGGTCCACGGGCAGACGGCCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTG	-			P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	94	561	0	ENST00000304494.5:c.151-243_359del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
MED12	9968	MSKCC	GRCh37	X	70341479	70341479	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	71	530	0	ENST00000374080.3:c.914T>A	p.Leu305Gln	p.L305Q	ENST00000374080		305	cTg/cAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76938929	76938929	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	79	612	0	ENST00000373344.5:c.1819G>T	p.Glu607Ter	p.E607*	ENST00000373344	NM_000489.3	607	Gaa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0027493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	149	517	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0027493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	166	593	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242494	55242494	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	150	466	1	ENST00000275493.2:c.2264C>A	p.Ala755Asp	p.A755D	ENST00000275493	NM_005228.3	755	gCc/gAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916136	9916136	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	90	351	0	ENST00000330684.3:c.2153T>G	p.Val718Gly	p.V718G	ENST00000330684	NM_001134407.1	718	gTc/gGc																																																																															
ATR	545	MSKCC	GRCh37	3	142171989	142171989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	115	538	0	ENST00000350721.4:c.7742G>A	p.Gly2581Glu	p.G2581E	ENST00000350721	NM_001184.3	2581	gGa/gAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0027494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	113	379	1	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0027494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	160	436	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609934	81609934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	44	177	0	ENST00000298171.2:c.1532C>T	p.Thr511Met	p.T511M	ENST00000298171	NM_000369.2	511	aCg/aTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911510	114911514	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAA	AAGAA	-			P-0027494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	57	211	0	ENST00000543371.1:c.1033_1037del	p.Lys345GlufsTer9	p.K345Efs*9	ENST00000543371	NM_001198531.1	343	gAAGAA/g																																																																															
ATM	472	MSKCC	GRCh37	11	108106556	108106556	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	77	315	0	ENST00000278616.4:c.491G>A	p.Trp164Ter	p.W164*	ENST00000278616	NM_000051.3	164	tGg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112173783	112173783	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0027494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	67	284	0	ENST00000257430.4:c.2492T>G	p.Leu831Ter	p.L831*	ENST00000257430	NM_000038.5	831	tTa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578425	7578427	+	missense_variant	Missense_Mutation	ONP	TGT	TGT	AGG			P-0027495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	28	545	0	ENST00000269305.4:c.503_505delinsCCT	p.His168_Met169delinsProLeu	p.H168_M169delinsPL	ENST00000269305	NM_001126112.2	168	cACAtg/cCCTtg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266831	198266831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	210	572	0	ENST00000335508.6:c.2101G>T	p.Val701Phe	p.V701F	ENST00000335508	NM_012433.2	701	Gtt/Ttt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0027499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	77	338	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68844244	68844244	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0027499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	146	386	0	ENST00000261769.5:c.832G>T	p.Gly278Ter	p.G278*	ENST00000261769	NM_004360.3	278	Gga/Tga																																																																															
BIRC3	330	MSKCC	GRCh37	11	102196200	102196200	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	89	255	0	ENST00000263464.3:c.857A>G	p.Asn286Ser	p.N286S	ENST00000263464	NM_001165.4	286	aAc/aGc																																																																															
SRC	6714	MSKCC	GRCh37	20	36031209	36031209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	157	727	0	ENST00000358208.4:c.1328C>T	p.Thr443Ile	p.T443I	ENST00000358208		443	aCc/aTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0027341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	40	327	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013744	12013744	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0027341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	42	339	0	ENST00000353533.5:c.685+1G>C		p.X229_splice	ENST00000353533	NM_003010.3	229																																																																																
NCOR1	9611	MSKCC	GRCh37	17	16075157	16075157	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	55	316	0	ENST00000268712.3:c.395del	p.Pro132ArgfsTer6	p.P132Rfs*6	ENST00000268712	NM_006311.3	132	cCg/cg																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966610	36966610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	57	523	0	ENST00000358127.4:c.716G>A	p.Arg239His	p.R239H	ENST00000358127	NM_001280556.1	239	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0027343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	166	291	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0027343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	244	442	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	206	426	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552822		P-0027343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	203	439	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021655	31021655	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs143952412		P-0027343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	249	425	0	ENST00000375687.4:c.1654A>G	p.Ile552Val	p.I552V	ENST00000375687	NM_015338.5	552	Att/Gtt																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430574	78430574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	101	358	0	ENST00000370768.2:c.716G>A	p.Gly239Glu	p.G239E	ENST00000370768	NM_003902.3	239	gGa/gAa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624290	89624290	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	208	397	0	ENST00000371953.3:c.64G>C	p.Asp22His	p.D22H	ENST00000371953	NM_000314.4	22	Gac/Cac																																																																															
RAD52	5893	MSKCC	GRCh37	12	1036417	1036417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	220	488	0	ENST00000358495.3:c.361C>T	p.His121Tyr	p.H121Y	ENST00000358495	NM_134424.2	121	Cat/Tat																																																																															
MGA	23269	MSKCC	GRCh37	15	42041075	42041075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	301	450	1	ENST00000219905.7:c.5453G>A	p.Arg1818Gln	p.R1818Q	ENST00000219905	NM_001164273.1	1818	cGa/cAa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098547	11098547	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	281	576	0	ENST00000344626.4:c.1065C>G	p.Ile355Met	p.I355M	ENST00000344626	NM_003072.3	355	atC/atG																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128420028	128420028	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	242	581	0	ENST00000265960.3:c.400C>G	p.Pro134Ala	p.P134A	ENST00000265960	NM_001006617.1	134	Cca/Gca																																																																															
CDH1	999	MSKCC	GRCh37	16	68862082	68862083	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	41	387	0	ENST00000261769.5:c.2172dup	p.Leu725SerfsTer23	p.L725Sfs*23	ENST00000261769	NM_004360.3	724	att/aTtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0027390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	193	745	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0027390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	163	647	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0027390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	214	492	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969884	81969884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199840870		P-0027390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	193	749	2	ENST00000359376.3:c.2953G>A	p.Val985Ile	p.V985I	ENST00000359376	NM_002661.3	985	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0027390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	61	325	0	ENST00000257430.4:c.4059_4060del	p.Glu1353AspfsTer21	p.E1353Dfs*21	ENST00000257430	NM_000038.5	1353	gaATtt/gatt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031859	10031859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	177	730	1	ENST00000330684.3:c.964G>A	p.Gly322Arg	p.G322R	ENST00000330684	NM_001134407.1	322	Ggg/Agg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133553	55133553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	102	692	0	ENST00000257290.5:c.857G>A	p.Gly286Glu	p.G286E	ENST00000257290	NM_006206.4	286	gGa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112175643	112175643	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	101	510	0	ENST00000257430.4:c.4353del	p.Val1452TyrfsTer21	p.V1452Yfs*21	ENST00000257430	NM_000038.5	1451	gAa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	39	618	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0027394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	53	828	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
RAD51	5888	MSKCC	GRCh37	15	40993283	40993283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	27	570	1	ENST00000267868.3:c.109G>A	p.Asp37Asn	p.D37N	ENST00000267868	NM_002875.4	37	Gat/Aat																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440652	56440652	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	59	727	0	ENST00000407977.2:c.566del	p.Lys189ArgfsTer14	p.K189Rfs*14	ENST00000407977		189	aAg/ag																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871827	12871833	+	frameshift_variant	Frame_Shift_Del	DEL	GGTTCTG	GGTTCTG	-			P-0027395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	40	361	2	ENST00000228872.4:c.544_550del	p.Gly182TrpfsTer41	p.G182Wfs*41	ENST00000228872	NM_004064.3	182	GGTTCTGtg/tg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0027395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	115	526	8	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68842387	68842387	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0027395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	163	666	5	ENST00000261769.5:c.448A>T	p.Arg150Ter	p.R150*	ENST00000261769	NM_004360.3	150	Aga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	22	503	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856458	111856458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	23	321	1	ENST00000341259.2:c.509C>T	p.Ala170Val	p.A170V	ENST00000341259	NM_005475.2	170	gCt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0027256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	138	373	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061194	38061555	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCTTCTGGCGGCGCAAGTAGCAGCCGTTCTCGAACATGTTGCCGGAGTCCGGGTGCAGCGTCCAGTAGGAGCCCTTGCCCGGCTTGTCCGGGGAGCGTGCCACCTTGACGAAGCAGTCATTGAAGGACAGCGAGTGGCGGATGGAGTTCTGCCAGCGCTGCTGGTTCTGCCGGTAATAGGGGAAGAGGTCCATGATCCACTGGTAGATCTCGCTCAGCGTGAGCATCTTGCTGGGCGCCTGCTGGATGGCCATGGTGATGAGCGAGATGTACGAGTAGGGCGGCTTGGCGTGCGGGTAGCTGCGCTTGAACGTCTTGGCGTCGCCGCCGCCGCCCGCGCGGCTGCGGCCCAGGTTGGACG	GCGCTTCTGGCGGCGCAAGTAGCAGCCGTTCTCGAACATGTTGCCGGAGTCCGGGTGCAGCGTCCAGTAGGAGCCCTTGCCCGGCTTGTCCGGGGAGCGTGCCACCTTGACGAAGCAGTCATTGAAGGACAGCGAGTGGCGGATGGAGTTCTGCCAGCGCTGCTGGTTCTGCCGGTAATAGGGGAAGAGGTCCATGATCCACTGGTAGATCTCGCTCAGCGTGAGCATCTTGCTGGGCGCCTGCTGGATGGCCATGGTGATGAGCGAGATGTACGAGTAGGGCGGCTTGGCGTGCGGGTAGCTGCGCTTGAACGTCTTGGCGTCGCCGCCGCCGCCCGCGCGGCTGCGGCCCAGGTTGGACG	-			P-0027256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	76	502	0	ENST00000250448.2:c.434_795del	p.Pro145LeufsTer27	p.P145Lfs*27	ENST00000250448	NM_004496.3	145	cCGTCCAACCTGGGCCGCAGCCGCGCGGGCGGCGGCGGCGACGCCAAGACGTTCAAGCGCAGCTACCCGCACGCCAAGCCGCCCTACTCGTACATCTCGCTCATCACCATGGCCATCCAGCAGGCGCCCAGCAAGATGCTCACGCTGAGCGAGATCTACCAGTGGATCATGGACCTCTTCCCCTATTACCGGCAGAACCAGCAGCGCTGGCAGAACTCCATCCGCCACTCGCTGTCCTTCAATGACTGCTTCGTCAAGGTGGCACGCTCCCCGGACAAGCCGGGCAAGGGCTCCTACTGGACGCTGCACCCGGACTCCGGCAACATGTTCGAGAACGGCTGCTACTTGCGCCGCCAGAAGCGC/c																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56780690	56780690	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0027256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	265	457	0	ENST00000337432.4:c.705G>T	p.Lys235Asn	p.K235N	ENST00000337432	NM_058216.2	235	aaG/aaT																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128305355	128305355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	295	610	1	ENST00000265960.3:c.941G>A	p.Gly314Glu	p.G314E	ENST00000265960	NM_001006617.1	314	gGa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	436	636	0	ENST00000269305.4:c.578A>C	p.His193Pro	p.H193P	ENST00000269305	NM_001126112.2	193	cAt/cCt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957419	1957419	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0027259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	158	467	1	ENST00000382891.5:c.2523del		p.X841_splice	ENST00000382891	NM_133335.3	841																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15285039	15285039	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	223	616	2	ENST00000263388.2:c.4576C>A	p.Arg1526Ser	p.R1526S	ENST00000263388	NM_000435.2	1526	Cgt/Agt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233268	46233268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1246	193	429	0	ENST00000334344.6:c.1487C>T	p.Ala496Val	p.A496V	ENST00000334344	NM_152641.2	496	gCa/gTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438272	49438272	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	442	570	0	ENST00000301067.7:c.4997T>G	p.Leu1666Arg	p.L1666R	ENST00000301067	NM_003482.3	1666	cTg/cGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445059	49445059	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	195	587	0	ENST00000301067.7:c.2407G>T	p.Glu803Ter	p.E803*	ENST00000301067	NM_003482.3	803	Gaa/Taa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109822	115109822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	194	602	0	ENST00000257566.3:c.2056G>A	p.Val686Met	p.V686M	ENST00000257566	NM_016569.3	686	Gtg/Atg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28644651	28644651	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	235	671	0	ENST00000241453.7:c.142G>C	p.Gly48Arg	p.G48R	ENST00000241453	NM_004119.2	48	Ggg/Cgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29667552	29667552	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	468	580	0	ENST00000358273.4:c.6951G>A	p.Trp2317Ter	p.W2317*	ENST00000358273	NM_001042492.2	2317	tgG/tgA																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276699	15276699	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0027259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	526	758	1	ENST00000263388.2:c.5566A>T	p.Lys1856Ter	p.K1856*	ENST00000263388	NM_000435.2	1856	Aag/Tag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52712615	52712615	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0027259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	291	352	0	ENST00000394830.3:c.139-2A>T		p.X47_splice	ENST00000394830	NM_018313.4	47																																																																																
TET2	54790	MSKCC	GRCh37	4	106158482	106158482	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	163	331	0	ENST00000380013.4:c.3383A>G	p.Tyr1128Cys	p.Y1128C	ENST00000380013	NM_001127208.2	1128	tAt/tGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557740	187557740	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0027259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	224	292	0	ENST00000441802.2:c.3971C>T	p.Ser1324Leu	p.S1324L	ENST00000441802	NM_005245.3	1324	tCa/tTa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86627199	86627200	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	214	282	0	ENST00000274376.6:c.576dup	p.Glu193ArgfsTer18	p.E193Rfs*18	ENST00000274376	NM_002890.2	192	gaa/gAaa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486253	8486253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	167	381	0	ENST00000356435.5:c.2564G>A	p.Gly855Asp	p.G855D	ENST00000356435		855	gGc/gAc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321407	1321407	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0027259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	131	372	0	ENST00000381566.1:c.350-2A>T		p.X117_splice	ENST00000381566		117																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	62	434	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156715	20156715	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	73	456	1	ENST00000379607.5:c.42G>T	p.Arg14Ser	p.R14S	ENST00000379607	NM_001412.3	14	agG/agT																																																																															
ATM	472	MSKCC	GRCh37	11	108117757	108117757	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	25	402	0	ENST00000278616.4:c.968T>G	p.Ile323Arg	p.I323R	ENST00000278616	NM_000051.3	323	aTa/aGa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109962	115109962	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	19	959	0	ENST00000257566.3:c.1916G>T	p.Arg639Leu	p.R639L	ENST00000257566	NM_016569.3	639	cGc/cTc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870504	40870504	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	99	542	0	ENST00000428826.2:c.899G>C	p.Arg300Pro	p.R300P	ENST00000428826		300	cGg/cCg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740709	58740709	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	50	626	1	ENST00000305921.3:c.1614A>T	p.Leu538Phe	p.L538F	ENST00000305921	NM_003620.3	538	ttA/ttT																																																																															
TP63	8626	MSKCC	GRCh37	3	189526078	189526079	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0027347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	44	548	1	ENST00000264731.3:c.342_343delinsTT	p.Gly115Trp	p.G115W	ENST00000264731	NM_003722.4	114	ctGGgg/ctTTgg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636677	176636677	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	18	432	0	ENST00000439151.2:c.1277G>T	p.Gly426Val	p.G426V	ENST00000439151	NM_022455.4	426	gGa/gTa																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36653554	36653554	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	79	550	0	ENST00000244741.5:c.472A>G	p.Ile158Val	p.I158V	ENST00000244741	NM_000389.4	158	Atc/Gtc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2951835	2951836	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0027347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	51	759	1	ENST00000396946.4:c.3114_3115delinsAA	p.Pro1039Thr	p.P1039T	ENST00000396946	NM_032415.4	1038	gcCCct/gcAAct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	296	543	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991727	72991727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	139	379	0	ENST00000268489.5:c.2318C>T	p.Ala773Val	p.A773V	ENST00000268489	NM_006885.3	773	gCg/gTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0027351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	385	780	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0027351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	118	370	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087528	27087528	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	448	733	0	ENST00000324856.7:c.2102G>T	p.Gly701Val	p.G701V	ENST00000324856	NM_006015.4	701	gGc/gTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039344	47039344	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	477	881	0	ENST00000329236.7:c.736T>G	p.Tyr246Asp	p.Y246D	ENST00000329236	NM_001204466.1	246	Tac/Gac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	36	532	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68972969	68972969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	48	568	0	ENST00000288368.4:c.1294G>A	p.Val432Met	p.V432M	ENST00000288368	NM_024870.2	432	Gtg/Atg																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652353	48652353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	50	535	1	ENST00000376670.3:c.1024G>A	p.Gly342Ser	p.G342S	ENST00000376670	NM_002049.3	342	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0027298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	749	725	5	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519896		P-0027298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	119	334	0	ENST00000281708.4:c.1514G>T	p.Arg505Leu	p.R505L	ENST00000281708	NM_033632.3	505	cGc/cTc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120318	94120318	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41273629		P-0027298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	204	242	0	ENST00000369303.4:c.733G>A	p.Ala245Thr	p.A245T	ENST00000369303	NM_004440.3	245	Gcc/Acc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741660	17741660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	246	646	1	ENST00000250003.3:c.331C>T	p.Arg111Cys	p.R111C	ENST00000250003	NM_002478.4	111	Cgc/Tgc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482439	56482446	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTGGGT	AGGTGGGT	-			P-0027298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	101	533	0	ENST00000267101.3:c.988+2_988+9del		p.X330_splice	ENST00000267101	NM_001982.3	330																																																																																
SOX9	6662	MSKCC	GRCh37	17	70120169	70120169	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	432	455	0	ENST00000245479.2:c.1171C>T	p.Gln391Ter	p.Q391*	ENST00000245479	NM_000346.3	391	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112174276	112174276	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	124	315	1	ENST00000257430.4:c.2985C>A	p.Cys995Ter	p.C995*	ENST00000257430	NM_000038.5	995	tgC/tgA																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738497	145738497	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1574	221	613	0	ENST00000428558.2:c.2488A>G	p.Arg830Gly	p.R830G	ENST00000428558	NM_004260.3	830	Aga/Gga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0027299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	107	448	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	75	431	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937723	36937723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	75	350	0	ENST00000361632.4:c.1015G>A	p.Asp339Asn	p.D339N	ENST00000361632		339	Gac/Aac																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435460	18435460	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	19	219	0	ENST00000266497.5:c.445A>T	p.Thr149Ser	p.T149S	ENST00000266497		149	Aca/Tca																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30098267	30098267	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	27	422	0	ENST00000331968.5:c.1705T>G	p.Cys569Gly	p.C569G	ENST00000331968	NM_002742.2	569	Tgc/Ggc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15950288	15950288	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	25	588	0	ENST00000268712.3:c.6656C>G	p.Ser2219Cys	p.S2219C	ENST00000268712	NM_006311.3	2219	tCt/tGt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222999	5222999	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	49	473	0	ENST00000357368.4:c.2804T>G	p.Leu935Arg	p.L935R	ENST00000357368	NM_002850.3	935	cTg/cGg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249523	153249523	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	29	389	0	ENST00000281708.4:c.1255G>T	p.Gly419Ter	p.G419*	ENST00000281708	NM_033632.3	419	Gga/Tga																																																																															
ROS1	6098	MSKCC	GRCh37	6	117663678	117663678	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	15	267	0	ENST00000368508.3:c.4554A>C	p.Glu1518Asp	p.E1518D	ENST00000368508	NM_002944.2	1518	gaA/gaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0027310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	132	325	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0027310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	63	279	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27022913	27022938	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCGCCGCCAGCAGCCTGGGCAA	CCCGCCGCCGCCAGCAGCCTGGGCAA	-			P-0027310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	14	69	0	ENST00000324856.7:c.31_56del	p.Ser11AlafsTer91	p.S11Afs*91	ENST00000324856	NM_006015.4	7	CCCGCCGCCGCCAGCAGCCTGGGCAAc/c																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0027310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	69	286	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945948	17945948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1321	169	740	1	ENST00000458235.1:c.1991C>T	p.Pro664Leu	p.P664L	ENST00000458235	NM_000215.3	664	cCg/cTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118941	70118942	+	inframe_insertion	In_Frame_Ins	INS	-	-	TAC			P-0027310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	329	731	0	ENST00000245479.2:c.514_516dup	p.Tyr172dup	p.Y172dup	ENST00000245479	NM_000346.3	172	-/TAC																																																																															
APC	324	MSKCC	GRCh37	5	112175463	112175464	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	101	240	0	ENST00000257430.4:c.4174dup	p.Ser1392PhefsTer3	p.S1392Ffs*3	ENST00000257430	NM_000038.5	1391	agt/agTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0027312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	153	237	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	206	375	0	ENST00000269305.4:c.528C>A	p.Cys176Ter	p.C176*	ENST00000269305	NM_001126112.2	176	tgC/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0027316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	15	403	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	47	447	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0027319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	82	804	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0027319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	73	671	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593399	48593400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0027319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	13	267	0	ENST00000342988.3:c.1151_1152dup	p.Lys385AlafsTer31	p.K385Afs*31	ENST00000342988	NM_005359.5	384	ggc/gGCgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879131	151879131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	48	488	1	ENST00000262189.6:c.5814G>A	p.Met1938Ile	p.M1938I	ENST00000262189	NM_170606.2	1938	atG/atA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	164	367	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0027322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	78	222	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1202793339		P-0027322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	297	675	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114903718	114903718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	177	793	0	ENST00000543371.1:c.722C>T	p.Pro241Leu	p.P241L	ENST00000543371	NM_001198531.1	241	cCg/cTg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546832	9546832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	102	434	0	ENST00000353224.5:c.1190C>T	p.Thr397Met	p.T397M	ENST00000353224	NM_177990.2	397	aCg/aTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47158129	47158129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	98	561	0	ENST00000409792.3:c.4570C>T	p.Leu1524Phe	p.L1524F	ENST00000409792	NM_014159.6	1524	Ctt/Ttt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0027326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	60	298	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032574	12032574	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	98	483	0	ENST00000353533.5:c.1013del	p.Pro338ArgfsTer25	p.P338Rfs*25	ENST00000353533	NM_003010.3	337	tCc/tc																																																																															
NF1	4763	MSKCC	GRCh37	17	29654515	29654515	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0026565-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			225	114	240	0	ENST00000358273.4:c.5269-2A>T		p.X1757_splice	ENST00000358273	NM_001042492.2	1757																																																																																
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026830-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			781	108	673	0	ENST00000269305.4:c.644G>C	p.Ser215Thr	p.S215T	ENST00000269305	NM_001126112.2	215	aGt/aCt																																																																															
APC	324	MSKCC	GRCh37	5	112174438	112174438	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026830-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			275	65	285	0	ENST00000257430.4:c.3147G>A	p.Trp1049Ter	p.W1049*	ENST00000257430	NM_000038.5	1049	tgG/tgA																																																																															
BRCA2	675	MSKCC	GRCh37	13	32930687	32930687	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026830-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			615	64	472	0	ENST00000380152.3:c.7558C>T	p.Arg2520Ter	p.R2520*	ENST00000380152		2520	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577562	7577563	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0026830-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			630	106	486	2	ENST00000269305.4:c.718_719delinsTT	p.Ser240Phe	p.S240F	ENST00000269305	NM_001126112.2	240	AGt/TTt																																																																															
TET1	80312	MSKCC	GRCh37	10	70451194	70451194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026830-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			520	97	506	0	ENST00000373644.4:c.6034G>A	p.Ala2012Thr	p.A2012T	ENST00000373644	NM_030625.2	2012	Gca/Aca																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112098	115112098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026830-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			571	98	690	0	ENST00000257566.3:c.1642G>T	p.Gly548Trp	p.G548W	ENST00000257566	NM_016569.3	548	Ggg/Tgg																																																																															
CDC42	998	MSKCC	GRCh37	1	22405018	22405018	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026830-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			157	18	118	0	ENST00000344548.3:c.47A>C	p.Lys16Thr	p.K16T	ENST00000344548	NM_001039802.1	16	aAa/aCa																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797736	45797736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026830-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			690	59	570	1	ENST00000372115.3:c.914C>T	p.Ala305Val	p.A305V	ENST00000372115	NM_001048171.1	305	gCc/gTc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838025	156838025	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026830-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			735	130	699	0	ENST00000524377.1:c.558G>T	p.Met186Ile	p.M186I	ENST00000524377	NM_002529.3	186	atG/atT																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612990	228612990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026830-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	65	304	0	ENST00000366696.1:c.37G>A	p.Gly13Ser	p.G13S	ENST00000366696	NM_003493.2	13	Ggt/Agt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110067	115110067	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026830-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			767	136	769	0	ENST00000257566.3:c.1811C>A	p.Pro604His	p.P604H	ENST00000257566	NM_016569.3	604	cCc/cAc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244988	41244988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026830-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			684	69	622	0	ENST00000357654.3:c.2560G>A	p.Ala854Thr	p.A854T	ENST00000357654	NM_007294.3	854	Gct/Act																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881594	111881594	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026830-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			602	122	597	0	ENST00000393256.3:c.272G>T	p.Arg91Leu	p.R91L	ENST00000393256	NM_006538.4	91	cGa/cTa																																																																															
SDHA	6389	MSKCC	GRCh37	5	224532	224532	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026830-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			366	230	351	2	ENST00000264932.6:c.208G>T	p.Gly70Ter	p.G70*	ENST00000264932	NM_004168.2	70	Gga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8471026	8471026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026830-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			388	83	449	1	ENST00000356435.5:c.3473G>T	p.Trp1158Leu	p.W1158L	ENST00000356435		1158	tGg/tTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410888	63410888	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026830-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			595	63	590	0	ENST00000330258.3:c.2279A>T	p.Glu760Val	p.E760V	ENST00000330258	NM_152424.3	760	gAg/gTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70338608	70338608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026830-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			491	26	438	1	ENST00000374080.3:c.4G>T	p.Ala2Ser	p.A2S	ENST00000374080		2	Gcg/Tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0026971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	528	530	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185184670	185184670	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188669013		P-0026971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	101	419	2	ENST00000265026.3:c.1562G>A	p.Arg521His	p.R521H	ENST00000265026	NM_004721.4	521	cGt/cAt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115263191	115263191	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	121	459	0	ENST00000438362.2:c.2159G>C	p.Arg720Pro	p.R720P	ENST00000438362	NM_001242891.1	720	cGc/cCc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246021918	246021918	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1438	100	539	0	ENST00000388985.4:c.956G>C	p.Arg319Pro	p.R319P	ENST00000388985		319	cGg/cCg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478899	56478899	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	272	601	0	ENST00000267101.3:c.355G>C	p.Val119Leu	p.V119L	ENST00000267101	NM_001982.3	119	Gtc/Ctc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0026973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	97	627	4	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0026973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	148	736	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs778405030		P-0026973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	65	344	2	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692901	89692901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	210	536	2	ENST00000371953.3:c.385G>A	p.Gly129Arg	p.G129R	ENST00000371953	NM_000314.4	129	Gga/Aga																																																																															
EP300	2033	MSKCC	GRCh37	22	41573312	41573312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	147	835	1	ENST00000263253.7:c.5597C>T	p.Pro1866Leu	p.P1866L	ENST00000263253	NM_001429.3	1866	cCg/cTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28913326	28913326	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	129	704	0	ENST00000282397.4:c.2467G>T	p.Ala823Ser	p.A823S	ENST00000282397	NM_002019.4	823	Gcc/Tcc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5211667	5211667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	138	644	0	ENST00000357368.4:c.5168G>A	p.Cys1723Tyr	p.C1723Y	ENST00000357368	NM_002850.3	1723	tGt/tAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	31	560	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0027186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	46	750	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
TET2	54790	MSKCC	GRCh37	4	106190905	106190905	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0027186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	22	340	0	ENST00000380013.4:c.4182+1G>T		p.X1394_splice	ENST00000380013	NM_001127208.2	1394																																																																																
APC	324	MSKCC	GRCh37	5	112176254	112176254	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	41	443	0	ENST00000257430.4:c.4963A>G	p.Thr1655Ala	p.T1655A	ENST00000257430	NM_000038.5	1655	Aca/Gca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0027187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	164	483	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	109	632	3	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577573	7577573	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	57	601	1	ENST00000269305.4:c.708C>A	p.Tyr236Ter	p.Y236*	ENST00000269305	NM_001126112.2	236	taC/taA																																																																															
WT1	7490	MSKCC	GRCh37	11	32438072	32438072	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	143	487	1	ENST00000332351.3:c.965G>T	p.Ser322Ile	p.S322I	ENST00000332351	NM_024426.4	322	aGc/aTc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193119433	193119433	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0027187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1766	126	353	0	ENST00000367435.3:c.829-1G>T		p.X277_splice	ENST00000367435	NM_024529.4	277																																																																																
SDHD	6392	MSKCC	GRCh37	11	111958607	111958607	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0027187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	70	462	2	ENST00000375549.3:c.79A>T	p.Arg27Ter	p.R27*	ENST00000375549	NM_003002.3	27	Aga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484300	8484300	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	151	480	0	ENST00000356435.5:c.3232G>T	p.Glu1078Ter	p.E1078*	ENST00000356435		1078	Gag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098390	11098414	+	frameshift_variant	Frame_Shift_Del	DEL	TTCCCCCGCAGCCAACGGGCCGCCC	TTCCCCCGCAGCCAACGGGCCGCCC	-			P-0027190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	325	611	0	ENST00000344626.4:c.917_941del	p.Gln306ArgfsTer12	p.Q306Rfs*12	ENST00000344626	NM_003072.3	303	aTTCCCCCGCAGCCAACGGGCCGCCCt/at																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71037144	71037144	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0027190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	131	307	1	ENST00000318789.4:c.1146+1G>A		p.X382_splice	ENST00000318789	NM_032682.5	382																																																																																
WT1	7490	MSKCC	GRCh37	11	32414278	32414278	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	155	479	0	ENST00000332351.3:c.1273T>C	p.Phe425Leu	p.F425L	ENST00000332351	NM_024426.4	425	Ttc/Ctc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30108067	30108067	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	176	563	0	ENST00000331968.5:c.740C>T	p.Ser247Leu	p.S247L	ENST00000331968	NM_002742.2	247	tCa/tTa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031897	10031897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	185	559	0	ENST00000330684.3:c.926A>G	p.Lys309Arg	p.K309R	ENST00000330684	NM_001134407.1	309	aAg/aGg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14031642	14031642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	162	469	1	ENST00000311895.7:c.1831G>A	p.Gly611Arg	p.G611R	ENST00000311895	NM_005236.2	611	Gga/Aga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382128	152382128	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0027190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	107	292	0	ENST00000206249.3:c.1238A>G	p.Asn413Ser	p.N413S	ENST00000206249	NM_000125.3	413	aAc/aGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106632	27106632	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	171	527	0	ENST00000324856.7:c.6243C>A	p.Cys2081Ter	p.C2081*	ENST00000324856	NM_006015.4	2081	tgC/tgA																																																																															
ATM	472	MSKCC	GRCh37	11	108180982	108180982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	118	297	0	ENST00000278616.4:c.5858C>T	p.Thr1953Ile	p.T1953I	ENST00000278616	NM_000051.3	1953	aCa/aTa																																																																															
MGA	23269	MSKCC	GRCh37	15	41989112	41989113	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	208	457	0	ENST00000219905.7:c.1907dup	p.Leu636PhefsTer21	p.L636Ffs*21	ENST00000219905	NM_001164273.1	635	tct/tcTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581183	48581183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	88	325	0	ENST00000342988.3:c.487G>A	p.Val163Met	p.V163M	ENST00000342988	NM_005359.5	163	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	150	469	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0027192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	154	336	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822354	72822354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	253	620	1	ENST00000268489.5:c.9821C>T	p.Ala3274Val	p.A3274V	ENST00000268489	NM_006885.3	3274	gCc/gTc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143033783	143033783	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	160	402	0	ENST00000262992.4:c.2188C>G	p.Pro730Ala	p.P730A	ENST00000262992	NM_001101669.1	730	Cct/Gct																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0027198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	250	413	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155721	56155722	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0027198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	145	299	0	ENST00000399503.3:c.816_817del	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	271	agAAaa/agaa																																																																															
BLM	641	MSKCC	GRCh37	15	91292896	91292896	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	158	512	0	ENST00000355112.3:c.398A>T	p.Asp133Val	p.D133V	ENST00000355112	NM_000057.2	133	gAt/gTt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645883	67645883	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	202	435	1	ENST00000264010.4:c.811T>C	p.Cys271Arg	p.C271R	ENST00000264010	NM_006565.3	271	Tgc/Cgc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155595	56155596	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	C			P-0027198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	170	350	0	ENST00000399503.3:c.687_688delinsC	p.Ala230LeufsTer33	p.A230Lfs*33	ENST00000399503	NM_005921.1	229	gcAGct/gcCct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692896	89692896	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	17	370	0	ENST00000371953.3:c.380G>T	p.Gly127Val	p.G127V	ENST00000371953	NM_000314.4	127	gGa/gTa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112272	115112272	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	49	180	1	ENST00000257566.3:c.1468G>T	p.Ala490Ser	p.A490S	ENST00000257566	NM_016569.3	490	Gcc/Tcc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120776	115120776	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	144	434	1	ENST00000257566.3:c.230del	p.Pro77ArgfsTer11	p.P77Rfs*11	ENST00000257566	NM_016569.3	77	cCg/cg																																																																															
CDH1	999	MSKCC	GRCh37	16	68842595	68842595	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0027208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	43	430	0	ENST00000261769.5:c.532-1G>C		p.X178_splice	ENST00000261769	NM_004360.3	178																																																																																
PTEN	5728	MSKCC	GRCh37	10	89692859	89692859	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	19	164	0	ENST00000371953.3:c.343del	p.Asp115MetfsTer19	p.D115Mfs*19	ENST00000371953	NM_000314.4	115	Gat/at																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061192	38061192	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	32	367	0	ENST00000250448.2:c.797T>A	p.Phe266Tyr	p.F266Y	ENST00000250448	NM_004496.3	266	tTc/tAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	166	440	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
PARP1	142	MSKCC	GRCh37	1	226578316	226578316	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs193238922		P-0027273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	49	354	0	ENST00000366794.5:c.412C>T	p.Arg138Cys	p.R138C	ENST00000366794	NM_001618.3	138	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	151	526	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0027274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	249	690	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ETV6	2120	MSKCC	GRCh37	12	11992154	11992154	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs202244621		P-0027274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	291	532	0	ENST00000396373.4:c.244A>G	p.Ile82Val	p.I82V	ENST00000396373	NM_001987.4	82	Att/Gtt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244282	5244282	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	48	721	0	ENST00000357368.4:c.1200C>G	p.Ile400Met	p.I400M	ENST00000357368	NM_002850.3	400	atC/atG																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821596	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs767179754		P-0027276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	11	93	0	ENST00000268489.5:c.10579_10581del	p.Gly3527del	p.G3527del	ENST00000268489	NM_006885.3	3527	GGC/-																																																																															
SMO	6608	MSKCC	GRCh37	7	128829040	128829042	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0027276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	10	40	0	ENST00000249373.3:c.67_69delCTG	p.Leu23del	p.L23del	ENST00000249373	NM_005631.4	16	ggGCTg/ggg																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0027279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	70	370	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0027279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	180	456	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845901	156845901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	174	667	1	ENST00000524377.1:c.1531G>A	p.Val511Met	p.V511M	ENST00000524377	NM_002529.3	511	Gtg/Atg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	26	237	0	ENST00000342988.3:c.1255G>T	p.Gly419Trp	p.G419W	ENST00000342988	NM_005359.5	419	Ggg/Tgg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69000005	69000005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	160	496	1	ENST00000288368.4:c.2074C>T	p.Arg692Trp	p.R692W	ENST00000288368	NM_024870.2	692	Cgg/Tgg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260103	19260103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	79	596	1	ENST00000162023.5:c.190C>T	p.Arg64Cys	p.R64C	ENST00000162023		64	Cgt/Tgt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266853	41266853	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	86	275	1	ENST00000349496.5:c.524T>A	p.Val175Asp	p.V175D	ENST00000349496	NM_001904.3	175	gTc/gAc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430234	181430234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	67	293	0	ENST00000325404.1:c.86C>T	p.Ala29Val	p.A29V	ENST00000325404	NM_003106.3	29	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175615	112175615	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	87	329	0	ENST00000257430.4:c.4325delC	p.Pro1442LeufsTer31	p.P1442Lfs*31	ENST00000257430	NM_000038.5	1442	Cct/ct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0027281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	59	443	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0027281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	61	474	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
ARAF	369	MSKCC	GRCh37	X	47426115	47426115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	71	644	0	ENST00000377045.4:c.635C>A	p.Ser212Tyr	p.S212Y	ENST00000377045	NM_001654.4	212	tCc/tAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0027286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	80	425	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0027286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	183	569	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873587	151873588	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	107	400	0	ENST00000262189.6:c.8950dup	p.Ser2984PhefsTer18	p.S2984Ffs*18	ENST00000262189	NM_170606.2	2984	tct/tTct																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711269	114711271	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	TTA	TTA	-			P-0027286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	133	423	3	ENST00000543371.1:c.284_286del	p.Phe95_Lys96delinsTer	p.F95_K96delins*	ENST00000543371	NM_001198531.1	95	tTTAag/tag																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46583310	46583310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	45	279	0	ENST00000263734.3:c.238G>A	p.Glu80Lys	p.E80K	ENST00000263734	NM_001430.4	80	Gaa/Aaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111736	56111737	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	20	58	0	ENST00000399503.3:c.340dup	p.His114ProfsTer50	p.H114Pfs*50	ENST00000399503	NM_005921.1	112	-/C																																																																															
APC	324	MSKCC	GRCh37	5	112175155	112175159	+	frameshift_variant	Frame_Shift_Del	DEL	ATGTA	ATGTA	-			P-0027286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	48	174	0	ENST00000257430.4:c.3866_3870del	p.Cys1289SerfsTer10	p.C1289Sfs*10	ENST00000257430	NM_000038.5	1288	ggATGTAat/ggat																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431408	121431408	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	68	531	0	ENST00000257555.6:c.612C>A	p.Phe204Leu	p.F204L	ENST00000257555		204	ttC/ttA																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94124442	94124442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	27	446	0	ENST00000369303.4:c.141G>T	p.Trp47Cys	p.W47C	ENST00000369303	NM_004440.3	47	tgG/tgT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0027288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	107	518	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0027288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	66	501	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0027288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	137	539	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023702	31023702	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	158	540	1	ENST00000375687.4:c.3187C>T	p.Gln1063Ter	p.Q1063*	ENST00000375687	NM_015338.5	1063	Cag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0027288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	139	403	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	36	249	0	ENST00000257430.4:c.4473dupT	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																															
APC	324	MSKCC	GRCh37	5	112174223	112174223	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	61	321	0	ENST00000257430.4:c.2932C>T	p.Gln978Ter	p.Q978*	ENST00000257430	NM_000038.5	978	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0027024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	409	468	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022465	12022465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	215	564	0	ENST00000396373.4:c.571C>T	p.Arg191Trp	p.R191W	ENST00000396373	NM_001987.4	191	Cgg/Tgg																																																																															
TP63	8626	MSKCC	GRCh37	3	189584585	189584585	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0027024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	128	373	0	ENST00000264731.3:c.881A>T	p.Gln294Leu	p.Q294L	ENST00000264731	NM_003722.4	294	cAg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0027146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	77	597	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231707	66231707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	31	481	1	ENST00000273854.3:c.1993G>A	p.Glu665Lys	p.E665K	ENST00000273854	NM_004439.5	665	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952086	178952086	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	72	338	0	ENST00000263967.3:c.3141T>A	p.His1047Gln	p.H1047Q	ENST00000263967	NM_006218.2	1047	caT/caA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0027146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	1238	458	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044850	47044850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	220	640	1	ENST00000329236.7:c.1942C>T	p.Arg648Ter	p.R648*	ENST00000329236	NM_001204466.1	648	Cga/Tga																																																																															
ATRX	546	MSKCC	GRCh37	X	76940045	76940045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	138	463	0	ENST00000373344.5:c.703T>C	p.Cys235Arg	p.C235R	ENST00000373344	NM_000489.3	235	Tgc/Cgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	71	473	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CDK8	1024	MSKCC	GRCh37	13	26923308	26923308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	51	330	0	ENST00000381527.3:c.304C>T	p.His102Tyr	p.H102Y	ENST00000381527	NM_001260.1	102	Cat/Tat																																																																															
STK11	6794	MSKCC	GRCh37	19	1221239	1221240	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	122	706	0	ENST00000326873.7:c.762_763insG	p.Phe255ValfsTer11	p.F255Vfs*11	ENST00000326873	NM_000455.4	254	-/G																																																																															
ACVR1	90	MSKCC	GRCh37	2	158636945	158636945	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	168	485	0	ENST00000263640.3:c.235A>T	p.Met79Leu	p.M79L	ENST00000263640	NM_001105.4	79	Atg/Ttg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225360642	225360648	+	frameshift_variant	Frame_Shift_Del	DEL	AGTTACT	AGTTACT	-			P-0026968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	86	375	0	ENST00000264414.4:c.1743_1749del	p.Val582AlafsTer16	p.V582Afs*16	ENST00000264414	NM_003590.4	581	caAGTAACT/ca																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163824	47163824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	59	473	0	ENST00000409792.3:c.2302G>T	p.Val768Leu	p.V768L	ENST00000409792	NM_014159.6	768	Gtg/Ttg																																																																															
KIT	3815	MSKCC	GRCh37	4	55569980	55569980	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	62	451	0	ENST00000288135.5:c.847A>T	p.Asn283Tyr	p.N283Y	ENST00000288135	NM_000222.2	283	Aat/Tat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0026972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	97	341	3	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736165	204736166	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	58	348	1	ENST00000302823.3:c.529dupT	p.Tyr177LeufsTer2	p.Y177Lfs*2	ENST00000302823	NM_005214.4	174	-/T																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18280081	18280081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	80	167	2	ENST00000222254.8:c.2164G>A	p.Gly722Ser	p.G722S	ENST00000222254	NM_005027.3	722	Ggc/Agc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56494900	56494900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	95	452	3	ENST00000267101.3:c.3257C>T	p.Pro1086Leu	p.P1086L	ENST00000267101	NM_001982.3	1086	cCa/cTa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438145	56438145	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0026972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	217	692	4	ENST00000407977.2:c.848A>C	p.Gln283Pro	p.Q283P	ENST00000407977		283	cAg/cCg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120193	70120193	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	71	497	1	ENST00000245479.2:c.1195A>G	p.Thr399Ala	p.T399A	ENST00000245479	NM_000346.3	399	Acg/Gcg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467734	66467734	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	17	285	0	ENST00000273854.3:c.535G>T	p.Ala179Ser	p.A179S	ENST00000273854	NM_004439.5	179	Gcc/Tcc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176662833	176662833	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	26	331	0	ENST00000439151.2:c.3808G>T	p.Glu1270Ter	p.E1270*	ENST00000439151	NM_022455.4	1270	Gag/Tag																																																																															
SMO	6608	MSKCC	GRCh37	7	128845610	128845610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	114	338	0	ENST00000249373.3:c.907C>T	p.Leu303Phe	p.L303F	ENST00000249373	NM_005631.4	303	Ctt/Ttt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428411	49428411	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	83	639	0	ENST00000301067.7:c.10394G>C	p.Gly3465Ala	p.G3465A	ENST00000301067	NM_003482.3	3465	gGa/gCa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562768	95562768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	63	369	0	ENST00000343455.3:c.4489G>T	p.Asp1497Tyr	p.D1497Y	ENST00000343455	NM_177438.2	1497	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	88	585	0	ENST00000269305.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTc/aCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242442	55242443	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTAAAATTCCCGTCGCTA			P-0026974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	100	504	0	ENST00000275493.2:c.2214_2231dup	p.Ile740_Lys745dup	p.I740_K745dup	ENST00000275493	NM_005228.3	740	gtt/gTTAAAATTCCCGTCGCTAtt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73340190	73340190	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	139	258	0	ENST00000377767.4:c.1890G>C	p.Leu630Phe	p.L630F	ENST00000377767	NM_014953.3	630	ttG/ttC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0027029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	36	497	1	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0027029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	20	409	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0027029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	22	635	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	54	604	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624275	89624275	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	54	370	1	ENST00000371953.3:c.49C>T	p.Gln17Ter	p.Q17*	ENST00000371953	NM_000314.4	17	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	83	647	0	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78420988	78420988	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	52	380	0	ENST00000370768.2:c.1732G>T	p.Gly578Ter	p.G578*	ENST00000370768	NM_003902.3	578	Gga/Tga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713306	30713306	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	32	398	0	ENST00000359013.4:c.706G>T	p.Glu236Ter	p.E236*	ENST00000359013	NM_001024847.2	236	Gag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974726	21975235	+	coding_sequence_variant,5_prime_UTR_variant	In_Frame_Del	DEL	GCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCTCTGGTGACCAGCCAGCCCCTCCTCTTTCTTCCTCCGGTGCTGGCGGAAGAGCCCCCTCCGACCCTGTCCCTCAAATCCTCTGGAGGGACCGCGGTATCTTTCCAGGCAAGGGGACGCCGTGAGCGAGTGCTCGGAGGAGGTGCTATTAACTCCGAGCACTTAGCGAATGTGGCACCCCTGAAGTCGCCCCAGGTTGGGTCTCCCCCGGGGGCACCAGCCGGAAGCAGCCCTCGCCAGAGCCAGCGTTGGCAAGGAAGGAGGACTGGGCTCCTCCCCACCTGCCCCCCACACCGCCCTCCGGCCTCCCTGCTCCCAGCCGCGCTCCCCCGCCTGCCA	GCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCTCTGGTGACCAGCCAGCCCCTCCTCTTTCTTCCTCCGGTGCTGGCGGAAGAGCCCCCTCCGACCCTGTCCCTCAAATCCTCTGGAGGGACCGCGGTATCTTTCCAGGCAAGGGGACGCCGTGAGCGAGTGCTCGGAGGAGGTGCTATTAACTCCGAGCACTTAGCGAATGTGGCACCCCTGAAGTCGCCCCAGGTTGGGTCTCCCCCGGGGGCACCAGCCGGAAGCAGCCCTCGCCAGAGCCAGCGTTGGCAAGGAAGGAGGACTGGGCTCCTCCCCACCTGCCCCCCACACCGCCCTCCGGCCTCCCTGCTCCCAGCCGCGCTCCCCCGCCTGCCA	-			P-0027030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	31	343	0				ENST00000304494	NM_000077.4			3-Jan																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685307	89685307	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	83	336	0	ENST00000371953.3:c.202T>A	p.Tyr68Asn	p.Y68N	ENST00000371953	NM_000314.4	68	Tac/Aac																																																																															
ACVR1	90	MSKCC	GRCh37	2	158634842	158634842	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	74	328	0	ENST00000263640.3:c.344C>G	p.Pro115Arg	p.P115R	ENST00000263640	NM_001105.4	115	cCt/cGt																																																																															
FYN	2534	MSKCC	GRCh37	6	112029222	112029222	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0027036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	25	356	0	ENST00000368678.4:c.346del	p.Glu116LysfsTer10	p.E116Kfs*10	ENST00000368678		116	Gaa/aa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6038842	6038842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	53	607	0	ENST00000265849.7:c.602G>A	p.Ser201Asn	p.S201N	ENST00000265849	NM_000535.5	201	aGt/aAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579346	7579346	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	297	653	0	ENST00000269305.4:c.341del	p.Leu114CysfsTer9	p.L114Cfs*9	ENST00000269305	NM_001126112.2	114	tTg/tg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444048	49444059	+	inframe_deletion	In_Frame_Del	DEL	GGGCTGGGGGCG	GGGCTGGGGGCG	-			P-0027069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	205	469	1	ENST00000301067.7:c.3312_3323del	p.Ser1107_Pro1110del	p.S1107_P1110del	ENST00000301067	NM_003482.3	1104	ccCGCCCCCAGCCCt/cct																																																																															
BRCA1	672	MSKCC	GRCh37	17	41258501	41258501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	125	465	0	ENST00000357654.3:c.184C>T	p.Pro62Ser	p.P62S	ENST00000357654	NM_007294.3	62	Cct/Tct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0027071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	30	592	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044886	47044889	+	frameshift_variant	Frame_Shift_Del	DEL	AGTG	AGTG	-			P-0027071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	50	759	0	ENST00000329236.7:c.1980_1983del	p.Ser660ArgfsTer63	p.S660Rfs*63	ENST00000329236	NM_001204466.1	660	AGTGag/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0027077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	108	639	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69005896	69005896	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	47	504	0	ENST00000288368.4:c.2307A>T	p.Gln769His	p.Q769H	ENST00000288368	NM_024870.2	769	caA/caT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	158	460	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0027078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	53	201	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911684	32911687	+	frameshift_variant	Frame_Shift_Del	DEL	AATT	AATT	-			P-0027078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	91	373	1	ENST00000380152.3:c.3195_3198del	p.Asn1066LeufsTer10	p.N1066Lfs*10	ENST00000380152		1064	tcAATT/tc																																																																															
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	46	190	0	ENST00000257430.4:c.4063dup	p.Ser1355PhefsTer20	p.S1355Ffs*20	ENST00000257430	NM_000038.5	1353	-/T																																																																															
MSH3	4437	MSKCC	GRCh37	5	79961132	79961132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	99	434	1	ENST00000265081.6:c.529G>A	p.Ala177Thr	p.A177T	ENST00000265081	NM_002439.4	177	Gca/Aca																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434890	110434890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	533	893	0	ENST00000375856.3:c.3511C>T	p.Arg1171Cys	p.R1171C	ENST00000375856	NM_003749.2	1171	Cgc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821376	72821376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	23	359	0	ENST00000268489.5:c.10799C>T	p.Pro3600Leu	p.P3600L	ENST00000268489	NM_006885.3	3600	cCg/cTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096024	11096024	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	140	764	0	ENST00000344626.4:c.298T>G	p.Ser100Ala	p.S100A	ENST00000344626	NM_003072.3	100	Tca/Gca																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264794	46264794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	224	389	0	ENST00000371998.3:c.1664A>G	p.Asn555Ser	p.N555S	ENST00000371998		555	aAt/aGt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38272344	38272344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	88	510	0	ENST00000425967.3:c.2023C>T	p.Leu675Phe	p.L675F	ENST00000425967	NM_001174067.1	675	Ctc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0027088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	154	499	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
GLI1	2735	MSKCC	GRCh37	12	57865621	57865621	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	122	728	1	ENST00000228682.2:c.3098T>A	p.Val1033Glu	p.V1033E	ENST00000228682	NM_005269.2	1033	gTa/gAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	103	428	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714711	52714711	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	39	517	1	ENST00000322088.6:c.469C>T	p.Arg157Ter	p.R157*	ENST00000322088	NM_014225.5	157	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0027090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	60	641	1	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49432178	49432179	+	missense_variant	Missense_Mutation	DNP	GG	GG	TA			P-0027090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	55	694	1	ENST00000301067.7:c.8960_8961delinsTA	p.Pro2987Leu	p.P2987L	ENST00000301067	NM_003482.3	2987	cCC/cTA																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149504374	149504374	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	96	531	0	ENST00000261799.4:c.1828del	p.Ala610ProfsTer13	p.A610Pfs*13	ENST00000261799	NM_002609.3	610	Gcc/cc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986707	36986707	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	17	21	0	ENST00000354822.5:c.982C>T	p.Gln328Ter	p.Q328*	ENST00000354822	NM_001079668.2	328	Cag/Tag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16056664	16056664	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	117	317	0	ENST00000268712.3:c.778A>G	p.Lys260Glu	p.K260E	ENST00000268712	NM_006311.3	260	Aaa/Gaa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	105	614	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89869671	89869671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	81	556	0	ENST00000389301.3:c.788C>T	p.Pro263Leu	p.P263L	ENST00000389301	NM_000135.2	263	cCg/cTg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88659566	88659566	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	50	443	1	ENST00000372037.3:c.349C>T	p.Gln117Ter	p.Q117*	ENST00000372037	NM_004329.2	117	Cag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42042454	42042454	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	40	505	0	ENST00000219905.7:c.6649C>T	p.Gln2217Ter	p.Q2217*	ENST00000219905	NM_001164273.1	2217	Caa/Taa																																																																															
MGA	23269	MSKCC	GRCh37	15	42058886	42058902	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGAAGCAGAGCAACT	CTGGAAGCAGAGCAACT	-			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	89	295	0	ENST00000219905.7:c.8606_8622del	p.Pro2869LeufsTer4	p.P2869Lfs*4	ENST00000219905	NM_001164273.1	2869	cCTGGAAGCAGAGCAACT/c																																																																															
NF1	4763	MSKCC	GRCh37	17	29533390	29533390	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	38	171	0	ENST00000358273.4:c.1392+1G>T		p.X464_splice	ENST00000358273	NM_001042492.2	464																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37871573	37871573	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	109	715	0	ENST00000269571.5:c.1183G>T	p.Glu395Ter	p.E395*	ENST00000269571		395	Gag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41420038	41420038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	55	342	3	ENST00000373198.4:c.283C>A	p.Leu95Met	p.L95M	ENST00000373198	NM_133170.3	95	Ctg/Atg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803455	32803455	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148976382		P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	120	665	1	ENST00000374899.4:c.704G>A	p.Arg235His	p.R235H	ENST00000374899	NM_018833.2	235	cGc/cAc																																																																															
LYN	4067	MSKCC	GRCh37	8	56864525	56864525	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	46	399	0	ENST00000519728.1:c.488G>C	p.Gly163Ala	p.G163A	ENST00000519728	NM_002350.3	163	gGa/gCa																																																																															
ABL1	25	MSKCC	GRCh37	9	133730389	133730389	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	56	421	0	ENST00000318560.5:c.455G>C	p.Arg152Pro	p.R152P	ENST00000318560	NM_005157.4	152	cGt/cCt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028784	47028784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	49	721	2	ENST00000329236.7:c.88C>T	p.Arg30Cys	p.R30C	ENST00000329236	NM_001204466.1	30	Cgc/Tgc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038828	47038828	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	99	702	1	ENST00000329236.7:c.604C>T	p.Gln202Ter	p.Q202*	ENST00000329236	NM_001204466.1	202	Cag/Tag																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652476	48652476	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	27	720	0	ENST00000376670.3:c.1147C>A	p.Pro383Thr	p.P383T	ENST00000376670	NM_002049.3	383	Cct/Act																																																																															
AR	367	MSKCC	GRCh37	X	66943600	66943600	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	31	496	0	ENST00000374690.3:c.2680G>T	p.Glu894Ter	p.E894*	ENST00000374690	NM_000044.3	894	Gaa/Taa																																																																															
MED12	9968	MSKCC	GRCh37	X	70349965	70349965	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	36	635	0	ENST00000374080.3:c.3948G>T	p.Gln1316His	p.Q1316H	ENST00000374080		1316	caG/caT																																																																															
STAG2	10735	MSKCC	GRCh37	X	123182920	123182921	+	missense_variant	Missense_Mutation	DNP	TA	TA	AG			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	34	290	2	ENST00000218089.9:c.885_886delinsAG	p.His295_Arg296delinsGlnGly	p.H295_R296delinsQG	ENST00000218089	NM_001042749.1	295	caTAga/caAGga																																																																															
FYN	2534	MSKCC	GRCh37	6	112015840	112015842	+	missense_variant	Missense_Mutation	ONP	CAT	CAT	AAA			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	68	452	0	ENST00000368678.4:c.1099_1101delinsTTT	p.Met367Phe	p.M367F	ENST00000368678		367	ATG/TTT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0027100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	274	581	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578471	7578471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	372	744	0	ENST00000269305.4:c.459delC	p.Gly154AlafsTer16	p.G154Afs*16	ENST00000269305	NM_001126112.2	153	ccC/cc																																																																															
FYN	2534	MSKCC	GRCh37	6	112041022	112041022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	181	334	1	ENST00000368678.4:c.233C>T	p.Thr78Met	p.T78M	ENST00000368678		78	aCg/aTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105703	27105710	+	frameshift_variant	Frame_Shift_Del	DEL	AAACTAGA	AAACTAGA	-			P-0027102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	101	280	0	ENST00000324856.7:c.5315_5322del	p.Lys1772ArgfsTer9	p.K1772Rfs*9	ENST00000324856	NM_006015.4	1772	AAACTAGAa/a																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031237	11031237	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	173	592	0	ENST00000327064.4:c.1322T>G	p.Ile441Ser	p.I441S	ENST00000327064	NM_199141.1	441	aTt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579359	7579359	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587780066		P-0027113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	131	584	0	ENST00000269305.4:c.328del	p.Arg110ValfsTer13	p.R110Vfs*13	ENST00000269305	NM_001126112.2	110	Cgt/gt																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0027113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	51	226	1	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0027113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	107	272	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578412	7578412	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519747		P-0027113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	107	520	0	ENST00000269305.4:c.518T>C	p.Val173Ala	p.V173A	ENST00000269305	NM_001126112.2	173	gTg/gCg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534431	63534431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	53	581	1	ENST00000307078.5:c.1090C>T	p.Pro364Ser	p.P364S	ENST00000307078	NM_004655.3	364	Ccc/Tcc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943447	17943447	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	99	611	0	ENST00000458235.1:c.2561T>A	p.Val854Glu	p.V854E	ENST00000458235	NM_000215.3	854	gTg/gAg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	169	487	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442570	52442570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	212	413	0	ENST00000460680.1:c.175C>T	p.Arg59Trp	p.R59W	ENST00000460680	NM_004656.3	59	Cgg/Tgg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115723	8115724	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGAAGGAAGGCATCC			P-0027115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	49	365	0	ENST00000346208.3:c.1073_1087dup	p.Lys358_Gln362dup	p.K358_Q362dup	ENST00000346208		358	aag/aAGAAGGAAGGCATCCag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	122	567	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0027128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	55	459	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0027128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1141	111	766	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	51	447	0	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga																																																																															
MSI1	4440	MSKCC	GRCh37	12	120794743	120794743	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1296	219	801	0	ENST00000257552.2:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000257552	NM_002442.3	205	tAc/tGc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161725	47161725	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	32	351	0	ENST00000409792.3:c.4401del	p.Met1469CysfsTer14	p.M1469Cfs*14	ENST00000409792	NM_014159.6	1467	ggG/gg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630176	187630176	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	80	576	0	ENST00000441802.2:c.806G>T	p.Arg269Met	p.R269M	ENST00000441802	NM_005245.3	269	aGg/aTg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137293573	137293573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1500	131	891	2	ENST00000481739.1:c.124G>A	p.Gly42Ser	p.G42S	ENST00000481739	NM_002957.4	42	Ggc/Agc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964398	70964398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	92	448	1	ENST00000276594.2:c.1630G>T	p.Asp544Tyr	p.D544Y	ENST00000276594	NM_024504.3	544	Gat/Tat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162135	47162136	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	T			P-0027128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	51	460	0	ENST00000409792.3:c.3990_3991delinsA	p.Leu1331Ter	p.L1331*	ENST00000409792	NM_014159.6	1330	tcCCta/tcAta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0027129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	77	521	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68847306	68847306	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	131	657	0	ENST00000261769.5:c.1228G>T	p.Glu410Ter	p.E410*	ENST00000261769	NM_004360.3	410	Gag/Tag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341536	89341536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	116	549	1	ENST00000301030.4:c.7534C>T	p.Arg2512Trp	p.R2512W	ENST00000301030	NM_001256183.1	2512	Cgg/Tgg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56348439	56348439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	67	355	0	ENST00000348428.3:c.247G>A	p.Glu83Lys	p.E83K	ENST00000348428	NM_006785.3	83	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0027131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	219	754	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221822	55221822	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149840192		P-0027131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	73	809	0	ENST00000275493.2:c.866C>T	p.Ala289Val	p.A289V	ENST00000275493	NM_005228.3	289	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577562	7577563	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGT			P-0027131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	83	652	0	ENST00000269305.4:c.716_718dup	p.Asn239dup	p.N239dup	ENST00000269305	NM_001126112.2	239	agt/aACAgt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11182158	11182158	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	157	743	0	ENST00000361445.4:c.6688T>G	p.Leu2230Val	p.L2230V	ENST00000361445	NM_004958.3	2230	Tta/Gta																																																																															
RB1	5925	MSKCC	GRCh37	13	48954301	48954301	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0027131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	51	389	0	ENST00000267163.4:c.1422C>A	p.Ser474Arg	p.S474R	ENST00000267163	NM_000321.2	474	agC/agA																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045017	47045032	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGGCTCCACAAGGTA	AGGGCTCCACAAGGTA	-			P-0027131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	145	849	0	ENST00000329236.7:c.2110_2121+4del		p.X704_splice	ENST00000329236	NM_001204466.1	704																																																																																
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0027132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	119	512	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	200	714	0	ENST00000269305.4:c.731G>C	p.Gly244Ala	p.G244A	ENST00000269305	NM_001126112.2	244	gGc/gCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	507	521	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	83	712	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579503	7579503	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	156	751	0	ENST00000269305.4:c.184G>T	p.Glu62Ter	p.E62*	ENST00000269305	NM_001126112.2	62	Gaa/Taa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176132113	176132113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	117	576	0	ENST00000367669.3:c.654G>T	p.Arg218Ser	p.R218S	ENST00000367669	NM_022457.5	218	agG/agT																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612901	228612901	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	69	572	0	ENST00000366696.1:c.126C>A	p.Tyr42Ter	p.Y42*	ENST00000366696	NM_003493.2	42	taC/taA																																																																															
MGA	23269	MSKCC	GRCh37	15	41988331	41988331	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	179	614	0	ENST00000219905.7:c.1123G>T	p.Gly375Ter	p.G375*	ENST00000219905	NM_001164273.1	375	Gga/Tga																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953224	17953224	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	149	749	0	ENST00000458235.1:c.762C>A	p.Phe254Leu	p.F254L	ENST00000458235	NM_000215.3	254	ttC/ttA																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523322	9523323	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	135	493	0	ENST00000353224.5:c.1914_1915delinsAT	p.Asp638_Gly639delinsGluCys	p.D638_G639delinsEC	ENST00000353224	NM_177990.2	638	gaTGgc/gaATgc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546795	9546795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	97	325	1	ENST00000353224.5:c.1227C>A	p.Ser409Arg	p.S409R	ENST00000353224	NM_177990.2	409	agC/agA																																																																															
ATR	545	MSKCC	GRCh37	3	142183977	142183977	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	152	590	0	ENST00000350721.4:c.7003G>C	p.Asp2335His	p.D2335H	ENST00000350721	NM_001184.3	2335	Gat/Cat																																																																															
ATR	545	MSKCC	GRCh37	3	142183992	142183992	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	147	607	0	ENST00000350721.4:c.6988G>C	p.Asp2330His	p.D2330H	ENST00000350721	NM_001184.3	2330	Gat/Cat																																																																															
SMO	6608	MSKCC	GRCh37	7	128845998	128845998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	137	498	0	ENST00000249373.3:c.928G>A	p.Glu310Lys	p.E310K	ENST00000249373	NM_005631.4	310	Gag/Aag																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187246	38187246	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1228	196	706	0	ENST00000317025.8:c.1231G>T	p.Ala411Ser	p.A411S	ENST00000317025	NM_023034.1	411	Gcc/Tcc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227763	53227763	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	105	689	2	ENST00000375401.3:c.2425A>G	p.Ser809Gly	p.S809G	ENST00000375401	NM_004187.3	809	Agt/Ggt																																																																															
IL10	3586	MSKCC	GRCh37	1	206944257	206944257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	339	360	0	ENST00000423557.1:c.373C>T	p.Arg125Cys	p.R125C	ENST00000423557	NM_000572.2	125	Cgc/Tgc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046500	30046500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	217	511	1	ENST00000331968.5:c.2683C>T	p.Pro895Ser	p.P895S	ENST00000331968	NM_002742.2	895	Cct/Tct																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562821	95562821	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	296	362	0	ENST00000343455.3:c.4436A>G	p.Tyr1479Cys	p.Y1479C	ENST00000343455	NM_177438.2	1479	tAt/tGt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274232	10274232	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	146	314	1	ENST00000330684.3:c.37C>A	p.Pro13Thr	p.P13T	ENST00000330684	NM_001134407.1	13	Ccg/Acg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	546	535	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732349	74732349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	380	338	0	ENST00000359995.5:c.560C>T	p.Ser187Phe	p.S187F	ENST00000359995	NM_001195427.1	187	tCt/tTt																																																																															
ALK	238	MSKCC	GRCh37	2	29940480	29940480	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	334	483	0	ENST00000389048.3:c.751G>C	p.Asp251His	p.D251H	ENST00000389048	NM_004304.4	251	Gac/Cac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230832	66230832	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0027145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	165	401	0	ENST00000273854.3:c.2139T>A	p.Tyr713Ter	p.Y713*	ENST00000273854	NM_004439.5	713	taT/taA																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858437	27858437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	177	322	1	ENST00000359303.2:c.134G>A	p.Gly45Asp	p.G45D	ENST00000359303	NM_003535.2	45	gGc/gAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500808	8500808	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	421	410	0	ENST00000356435.5:c.2074G>C	p.Asp692His	p.D692H	ENST00000356435		692	Gat/Cat																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740560	145740571	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTGCCCAGGG	TCCTGCCCAGGG	C			P-0027145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1196	281	655	0	ENST00000428558.2:c.1446_1457delinsG	p.Pro483AlafsTer53	p.P483Afs*53	ENST00000428558	NM_004260.3	482	cgCCCTGGGCAGGAg/cgGg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16235946	16235946	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	167	514	0	ENST00000375759.3:c.1012A>T	p.Lys338Ter	p.K338*	ENST00000375759	NM_015001.2	338	Aag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094365	27094374	+	frameshift_variant	Frame_Shift_Del	DEL	GACCGTTATC	GACCGTTATC	-			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	211	551	0	ENST00000324856.7:c.3073_3082del	p.Asp1025TrpfsTer11	p.D1025Wfs*11	ENST00000324856	NM_006015.4	1025	GACCGTTATCtg/tg																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51436112	51436112	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	130	451	0	ENST00000262662.1:c.72G>T	p.Leu24Phe	p.L24F	ENST00000262662		24	ttG/ttT																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572576	64572576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	227	654	1	ENST00000337652.1:c.1295G>T	p.Ser432Ile	p.S432I	ENST00000337652	NM_130803.2	432	aGt/aTt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478847	56478847	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	93	697	1	ENST00000267101.3:c.303C>A	p.Asn101Lys	p.N101K	ENST00000267101	NM_001982.3	101	aaC/aaA																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514441	103514441	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	53	236	0	ENST00000355739.4:c.942G>T	p.Met314Ile	p.M314I	ENST00000355739	NM_000123.3	314	atG/atT																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99250927	99250927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	172	513	1	ENST00000268035.6:c.231G>T	p.Lys77Asn	p.K77N	ENST00000268035	NM_000875.3	77	aaG/aaT																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351788	89351788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	75	815	0	ENST00000301030.4:c.1162G>T	p.Val388Phe	p.V388F	ENST00000301030	NM_001256183.1	388	Gtt/Ttt																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7990651	7990651	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	242	668	0	ENST00000319144.4:c.110T>A	p.Leu37Gln	p.L37Q	ENST00000319144	NM_001139.2	37	cTg/cAg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42843834	42843834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	75	607	0	ENST00000398585.3:c.1085G>A	p.Gly362Glu	p.G362E	ENST00000398585	NM_001135099.1	362	gGa/gAa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956747	68956747	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	169	606	0	ENST00000288368.4:c.865A>T	p.Thr289Ser	p.T289S	ENST00000288368	NM_024870.2	289	Aca/Tca																																																																															
TSC1	7248	MSKCC	GRCh37	9	135798803	135798803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	105	390	0	ENST00000298552.3:c.440G>T	p.Gly147Val	p.G147V	ENST00000298552	NM_001162426.1	147	gGg/gTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76909636	76909636	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	94	270	0	ENST00000373344.5:c.4269del	p.Arg1425GlyfsTer65	p.R1425Gfs*65	ENST00000373344	NM_000489.3	1423	aaG/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576900	7576901	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	176	613	0	ENST00000269305.4:c.945dup	p.Pro316SerfsTer21	p.P316Sfs*21	ENST00000269305	NM_001126112.2	315	-/T																																																																															
BRD4	23476	MSKCC	GRCh37	19	15376382	15376382	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1490	142	953	0	ENST00000263377.2:c.632C>G	p.Pro211Arg	p.P211R	ENST00000263377	NM_058243.2	211	cCt/cGt																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085978	16085978	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	185	539	0	ENST00000281043.3:c.1154A>G	p.Asn385Ser	p.N385S	ENST00000281043	NM_005378.4	385	aAc/aGc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162394431	162394431	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	47	388	1	ENST00000366898.1:c.637G>T	p.Gly213Ter	p.G213*	ENST00000366898	NM_004562.2	213	Gga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411327	63411327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	77	608	1	ENST00000330258.3:c.1840C>A	p.His614Asn	p.H614N	ENST00000330258	NM_152424.3	614	Cac/Aac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532912	187532914	+	missense_variant	Missense_Mutation	ONP	AAA	AAA	TAC			P-0027153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	35	379	0	ENST00000441802.2:c.9479_9481delinsGTA	p.Ile3160_Leu3161delinsSerIle	p.I3160_L3161delinsSI	ENST00000441802	NM_005245.3	3160	aTTTta/aGTAta																																																																															
MDM4	4194	MSKCC	GRCh37	1	204512017	204512018	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	A			P-0027153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	63	408	0	ENST00000367182.3:c.617_618delinsA	p.Leu206Ter	p.L206*	ENST00000367182	NM_001278516.1	206	tTG/tA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	42	512	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0027157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	34	435	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
TP63	8626	MSKCC	GRCh37	3	189526152	189526152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	92	656	0	ENST00000264731.3:c.416C>T	p.Ala139Val	p.A139V	ENST00000264731	NM_003722.4	139	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425533	49425533	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0027157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	33	957	1	ENST00000301067.7:c.12955A>T	p.Arg4319Ter	p.R4319*	ENST00000301067	NM_003482.3	4319	Aga/Tga																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477073	67477073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	26	442	0	ENST00000327367.4:c.880G>A	p.Val294Met	p.V294M	ENST00000327367	NM_005902.3	294	Gtg/Atg																																																																															
RET	5979	MSKCC	GRCh37	10	43602019	43602019	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0027159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	303	789	0	ENST00000355710.3:c.1063A>T	p.Arg355Trp	p.R355W	ENST00000355710	NM_020975.4	355	Agg/Tgg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577460	64577460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	723	701	0	ENST00000337652.1:c.122T>G	p.Leu41Arg	p.L41R	ENST00000337652	NM_130803.2	41	cTg/cGg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657524	37657524	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	32	497	0	ENST00000447079.4:c.2441A>T	p.Glu814Val	p.E814V	ENST00000447079	NM_015083.1	814	gAg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0027160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	143	669	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006009	22006009	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	36	797	0	ENST00000276925.6:c.394C>A	p.Leu132Met	p.L132M	ENST00000276925	NM_004936.3	132	Ctg/Atg																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	313	433	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																															
ATM	472	MSKCC	GRCh37	11	108216476	108216477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	121	222	0	ENST00000278616.4:c.8432dupA	p.Ser2812ValfsTer3	p.S2812Vfs*3	ENST00000278616	NM_000051.3	2809	caa/cAaa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618689	37618690	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	105	576	1	ENST00000447079.4:c.366dup	p.Leu123ThrfsTer4	p.L123Tfs*4	ENST00000447079	NM_015083.1	122	tta/ttAa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911617	134911617	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	37	482	0	ENST00000398015.3:c.2082G>T	p.Met694Ile	p.M694I	ENST00000398015	NM_004441.4	694	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	376	412	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
BCL6	604	MSKCC	GRCh37	3	187446324	187446324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	78	266	0	ENST00000232014.4:c.1364C>T	p.Thr455Met	p.T455M	ENST00000232014	NM_001130845.1	455	aCg/aTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27059176	27059176	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	164	649	1	ENST00000324856.7:c.1813C>T	p.Gln605Ter	p.Q605*	ENST00000324856	NM_006015.4	605	Caa/Taa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098954	178098954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	246	431	0	ENST00000397062.3:c.91G>A	p.Gly31Arg	p.G31R	ENST00000397062	NM_006164.4	31	Gga/Aga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057860	27057860	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	190	678	0	ENST00000324856.7:c.1568C>G	p.Ser523Cys	p.S523C	ENST00000324856	NM_006015.4	523	tCc/tGc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99163121	99163121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	136	526	1	ENST00000074304.5:c.1127G>T	p.Arg376Leu	p.R376L	ENST00000074304	NM_001134224.1	376	cGc/cTc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164320	47164320	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	133	504	0	ENST00000409792.3:c.1806G>C	p.Met602Ile	p.M602I	ENST00000409792	NM_014159.6	602	atG/atC																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934923	9934923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	115	526	0	ENST00000330684.3:c.1367G>A	p.Cys456Tyr	p.C456Y	ENST00000330684	NM_001134407.1	456	tGc/tAc																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348800	11348800	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	115	164	0	ENST00000332029.2:c.536G>T	p.Arg179Leu	p.R179L	ENST00000332029	NM_003745.1	179	cGc/cTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974748	21974748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	392	294	0	ENST00000304494.5:c.79del	p.Glu27ArgfsTer26	p.E27Rfs*26	ENST00000304494	NM_000077.4	27	Gag/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	151	393	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21994138	21994138	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0010689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	194	517	0	ENST00000361570.3:c.316G>A	p.Gly106Ser	p.G106S	ENST00000361570	NM_058195.3	106	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578286	7578286	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	186	434	0	ENST00000269305.4:c.563T>A	p.Leu188Gln	p.L188Q	ENST00000269305	NM_001126112.2	188	cTg/cAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913381		P-0011147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	340	279	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	809	668	1	ENST00000269305.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000269305	NM_001126112.2	273	Cgt/Agt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425644	49425644	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1057517992		P-0011147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	565	551	1	ENST00000301067.7:c.12844C>T	p.Arg4282Ter	p.R4282*	ENST00000301067	NM_003482.3	4282	Cga/Tga																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716082	243716082	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1303	284	557	0	ENST00000263826.5:c.1112C>A	p.Ser371Ter	p.S371*	ENST00000263826	NM_005465.4	371	tCa/tAa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488678	212488678	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	291	504	0	ENST00000342788.4:c.2171T>A	p.Leu724His	p.L724H	ENST00000342788	NM_005235.2	724	cTt/cAt																																																																															
BARD1	580	MSKCC	GRCh37	2	215610446	215610446	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0011147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	255	474	0	ENST00000260947.4:c.1810G>A	p.Val604Ile	p.V604I	ENST00000260947	NM_000465.2	604	Gta/Ata																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138375112	138375112	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	203	345	0	ENST00000289153.2:c.2947C>G	p.Arg983Gly	p.R983G	ENST00000289153	NM_006219.2	983	Cgc/Ggc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117730753	117730753	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	371	756	0	ENST00000368508.3:c.281A>C	p.Glu94Ala	p.E94A	ENST00000368508	NM_002944.2	94	gAa/gCa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244406	46244406	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	351	534	1	ENST00000334344.6:c.2500C>T	p.Gln834Ter	p.Q834*	ENST00000334344	NM_152641.2	834	Caa/Taa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289947	15289947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	382	602	0	ENST00000263388.2:c.3607G>A	p.Glu1203Lys	p.E1203K	ENST00000263388	NM_000435.2	1203	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	360	872	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	523	401	0				ENST00000310581	NM_198253.2																																																																																	
DDR2	4921	MSKCC	GRCh37	1	162746117	162746117	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	141	406	1	ENST00000367921.3:c.2240C>A	p.Ala747Glu	p.A747E	ENST00000367921	NM_006182.2	747	gCa/gAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373683	118373683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	197	676	0	ENST00000534358.1:c.7076C>T	p.Ser2359Leu	p.S2359L	ENST00000534358	NM_005933.3	2359	tCa/tTa																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281146	49281146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	111	893	1	ENST00000282018.3:c.193C>A	p.Gln65Lys	p.Q65K	ENST00000282018	NM_020377.2	65	Cag/Aag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420245	88420245	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	223	585	0	ENST00000360948.2:c.2441G>T	p.Arg814Leu	p.R814L	ENST00000360948	NM_001012338.2	814	cGg/cTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836351	89836351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1210	103	777	0	ENST00000389301.3:c.2398G>A	p.Glu800Lys	p.E800K	ENST00000389301	NM_000135.2	800	Gag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11100043	11100043	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1214	306	896	0	ENST00000344626.4:c.1169G>T	p.Gly390Val	p.G390V	ENST00000344626	NM_003072.3	390	gGg/gTg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55130019	55130019	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1489	120	829	0	ENST00000257290.5:c.553G>C	p.Gly185Arg	p.G185R	ENST00000257290	NM_006206.4	185	Ggg/Cgg																																																																															
KIT	3815	MSKCC	GRCh37	4	55594094	55594094	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	80	391	0	ENST00000288135.5:c.1879+1G>T		p.X627_splice	ENST00000288135	NM_000222.2	627																																																																																
TERT	7015	MSKCC	GRCh37	5	1279519	1279519	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1806	135	797	0	ENST00000310581.5:c.2017C>A	p.Pro673Thr	p.P673T	ENST00000310581	NM_198253.2	673	Ccc/Acc																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225777	26225777	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	162	432	0	ENST00000360408.1:c.395G>C	p.Arg132Pro	p.R132P	ENST00000360408	NM_003532.2	132	cGt/cCt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964345	70964345	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	58	328	0	ENST00000276594.2:c.1683C>G	p.Phe561Leu	p.F561L	ENST00000276594	NM_024504.3	561	ttC/ttG																																																																															
EZH2	2146	MSKCC	GRCh37	7	148523578	148523589	+	frameshift_variant	Frame_Shift_Del	DEL	TATTTAAAACAT	TATTTAAAACAT	C			P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	183	453	0	ENST00000320356.2:c.864_875delinsG	p.Cys289Ter	p.C289*	ENST00000320356	NM_004456.4	288	cgATGTTTTAAATAt/cgGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952146	178952147	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	88	421	0	ENST00000263967.3:c.3203dupA	p.Asn1068LysfsTer5	p.N1068Kfs*5	ENST00000263967	NM_006218.2	1067	-/A																																																																															
TP63	8626	MSKCC	GRCh37	3	189612061	189612061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	126	810	1	ENST00000264731.3:c.1813C>T	p.Arg605Trp	p.R605W	ENST00000264731	NM_003722.4	605	Cgg/Tgg																																																																															
FH	2271	MSKCC	GRCh37	1	241669468	241669468	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	317	530	0	ENST00000366560.3:c.739G>A	p.Glu247Lys	p.E247K	ENST00000366560	NM_000143.3	247	Gaa/Aaa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56857629	56857629	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	86	648	0	ENST00000308159.5:c.665A>C	p.Asp222Ala	p.D222A	ENST00000308159	NM_014669.4	222	gAc/gCc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302252	15302252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	74	861	0	ENST00000263388.2:c.1019G>T	p.Cys340Phe	p.C340F	ENST00000263388	NM_000435.2	340	tGc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0023530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	213	760	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0023530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	250	796	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0023530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	242	781	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593491	48593494	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0023530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	132	448	0	ENST00000342988.3:c.1245_1248del	p.Asp415GlufsTer20	p.D415Efs*20	ENST00000342988	NM_005359.5	414	ttAGAC/tt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974783	21974786	+	frameshift_variant	Frame_Shift_Del	DEL	CAGT	CAGT	-			P-0023530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	64	275	0	ENST00000304494.5:c.41_44delACTG	p.Asp14GlyfsTer11	p.D14Gfs*11	ENST00000304494	NM_000077.4	14	gACTGg/gg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	54	103	0				ENST00000310581	NM_198253.2																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178952138	178952139	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	79	283	0	ENST00000263967.3:c.3193_3194insT	p.His1065LeufsTer8	p.H1065Lfs*8	ENST00000263967	NM_006218.2	1065	cat/cTat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242444	55242445	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAAATTCCCGTCGCTATC			P-0026045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	150	547	0	ENST00000275493.2:c.2217_2234dup	p.Ile740_Lys745dup	p.I740_K745dup	ENST00000275493	NM_005228.3	740	-/AAAATTCCCGTCGCTATC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951939	178951943	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CATAA	CATAA	ATG			P-0026045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	112	513	0	ENST00000263967.3:c.2994_2998delinsATG	p.Phe998LeufsTer2	p.F998Lfs*2	ENST00000263967	NM_006218.2	998	ttCATAAat/ttATGat																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753316	57753316	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0026045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	170	418	0	ENST00000274289.3:c.808A>T	p.Met270Leu	p.M270L	ENST00000274289	NM_006622.3	270	Atg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	301	540	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0027016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	79	226	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0027016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	82	259	2	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48586237	48586237	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0027016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	93	423	0	ENST00000342988.3:c.906G>A	p.Trp302Ter	p.W302*	ENST00000342988	NM_005359.5	302	tgG/tgA																																																																															
ATM	472	MSKCC	GRCh37	11	108203493	108203493	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	77	209	0	ENST00000278616.4:c.7793G>T	p.Arg2598Leu	p.R2598L	ENST00000278616	NM_000051.3	2598	cGa/cTa																																																																															
B2M	567	MSKCC	GRCh37	15	45007842	45007842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	58	385	0	ENST00000558401.1:c.289G>A	p.Glu97Lys	p.E97K	ENST00000558401	NM_004048.2	97	Gag/Aag																																																																															
NF1	4763	MSKCC	GRCh37	17	29556362	29556362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	108	412	2	ENST00000358273.4:c.2729G>A	p.Gly910Glu	p.G910E	ENST00000358273	NM_001042492.2	910	gGa/gAa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285227	212285227	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	111	454	3	ENST00000342788.4:c.3074C>A	p.Pro1025His	p.P1025H	ENST00000342788	NM_005235.2	1025	cCt/cAt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31374306	31374306	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0027016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	237	424	0	ENST00000328111.2:c.307-2A>G		p.X103_splice	ENST00000328111	NM_006892.3	103																																																																																
VEGFA	7422	MSKCC	GRCh37	6	43745226	43745228	+	missense_variant	Missense_Mutation	ONP	TAT	TAT	CAG			P-0027016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	77	428	0	ENST00000523873.1:c.139_141delinsCAG	p.Tyr47Gln	p.Y47Q	ENST00000523873		47	TAT/CAG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0027046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	14	556	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793385	242793385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	13	769	1	ENST00000334409.5:c.692G>A	p.Arg231Gln	p.R231Q	ENST00000334409	NM_005018.2	231	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	28	405	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578410	7578410	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	42	579	0	ENST00000269305.4:c.520A>T	p.Arg174Trp	p.R174W	ENST00000269305	NM_001126112.2	174	Agg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132542	11132542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	38	580	0	ENST00000344626.4:c.2758G>A	p.Glu920Lys	p.E920K	ENST00000344626	NM_003072.3	920	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0027142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	19	192	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900239	32900239	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0027142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	27	312	0	ENST00000380152.3:c.427C>G	p.Pro143Ala	p.P143A	ENST00000380152		143	Cct/Gct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023919-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			570	119	332	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922364	178922364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023919-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			620	146	445	0	ENST00000263967.3:c.1133G>A	p.Cys378Tyr	p.C378Y	ENST00000263967	NM_006218.2	378	tGt/tAt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117593	70117599	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCCCA	GCCCCCA	-			P-0023919-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			821	117	579	0	ENST00000245479.2:c.66_72del	p.Ser23ProfsTer36	p.S23Pfs*36	ENST00000245479	NM_000346.3	21	GCCCCCAgc/gc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539785	187539785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023919-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			459	83	366	0	ENST00000441802.2:c.7955C>T	p.Ser2652Phe	p.S2652F	ENST00000441802	NM_005245.3	2652	tCc/tTc																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80412443	80412443	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023919-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			482	79	269	0	ENST00000286548.4:c.598A>G	p.Ile200Val	p.I200V	ENST00000286548	NM_002072.3	200	Att/Gtt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	26	445	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	69	398	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	24	284	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045533	47045533	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	46	517	1	ENST00000329236.7:c.2266A>T	p.Lys756Ter	p.K756*	ENST00000329236	NM_001204466.1	756	Aag/Tag																																																																															
FLT1	2321	MSKCC	GRCh37	13	28880903	28880903	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	37	352	0	ENST00000282397.4:c.3727C>A	p.Gln1243Lys	p.Q1243K	ENST00000282397	NM_002019.4	1243	Cag/Aag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045136	47045136	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	49	477	1	ENST00000329236.7:c.2143C>T	p.Arg715Ter	p.R715*	ENST00000329236	NM_001204466.1	715	Cga/Tga																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143033804	143033804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	37	285	0	ENST00000262992.4:c.2167G>T	p.Ala723Ser	p.A723S	ENST00000262992	NM_001101669.1	723	Gcc/Tcc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777798	3777798	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	88	722	0	ENST00000262367.5:c.7250G>T	p.Arg2417Met	p.R2417M	ENST00000262367	NM_004380.2	2417	aGg/aTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273863	10273863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	53	541	0	ENST00000330684.3:c.406G>T	p.Ala136Ser	p.A136S	ENST00000330684	NM_001134407.1	136	Gct/Tct																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953196	17953196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	47	648	1	ENST00000458235.1:c.790G>A	p.Gly264Ser	p.G264S	ENST00000458235	NM_000215.3	264	Ggc/Agc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464491	25464491	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	29	440	1	ENST00000264709.3:c.2022G>T	p.Met674Ile	p.M674I	ENST00000264709	NM_175629.2	674	atG/atT																																																																															
ALK	238	MSKCC	GRCh37	2	29445402	29445402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	44	579	0	ENST00000389048.3:c.3431C>T	p.Pro1144Leu	p.P1144L	ENST00000389048	NM_004304.4	1144	cCc/cTc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31388641	31388641	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	32	366	0	ENST00000328111.2:c.1906A>T	p.Ile636Phe	p.I636F	ENST00000328111	NM_006892.3	636	Att/Ttt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280153	66280153	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	30	216	0	ENST00000273854.3:c.1536G>C	p.Glu512Asp	p.E512D	ENST00000273854	NM_004439.5	512	gaG/gaC																																																																															
TEK	7010	MSKCC	GRCh37	9	27190620	27190620	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	36	495	0	ENST00000380036.4:c.1421G>C	p.Gly474Ala	p.G474A	ENST00000380036	NM_000459.3	474	gGa/gCa																																																																															
TEK	7010	MSKCC	GRCh37	9	27218786	27218786	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	50	371	0	ENST00000380036.4:c.3074G>T	p.Gly1025Val	p.G1025V	ENST00000380036	NM_000459.3	1025	gGt/gTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032548	47032548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	57	567	1	ENST00000329236.7:c.223C>T	p.His75Tyr	p.H75Y	ENST00000329236	NM_001204466.1	75	Cac/Tac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272266	15272266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	183	544	0	ENST00000263388.2:c.6173C>T	p.Ser2058Leu	p.S2058L	ENST00000263388	NM_000435.2	2058	tCg/tTg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78811759	78811759	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	191	542	1	ENST00000306801.3:c.1174C>T	p.Gln392Ter	p.Q392*	ENST00000306801	NM_020761.2	392	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624295	89624298	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0026838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	122	496	0	ENST00000371953.3:c.69_72del	p.Leu23PhefsTer2	p.L23Ffs*2	ENST00000371953	NM_000314.4	23	ttAGAC/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	214	462	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0026930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	356	603	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12629100	12629100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	220	414	2	ENST00000251849.4:c.1407G>A	p.Met469Ile	p.M469I	ENST00000251849	NM_002880.3	469	atG/atA																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222953	36222953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	219	776	0	ENST00000222270.7:c.5582C>T	p.Ser1861Leu	p.S1861L	ENST00000222270	NM_014727.1	1861	tCg/tTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971114	21971131	+	inframe_deletion	In_Frame_Del	DEL	CGGGTCGGGTGAGAGTGG	CGGGTCGGGTGAGAGTGG	-			P-0026930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	60	531	0	ENST00000304494.5:c.227_244del	p.Ala76_Pro81del	p.A76_P81del	ENST00000304494	NM_000077.4	76	gCCACTCTCACCCGACCCGtg/gtg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891337	101891337	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	280	656	0	ENST00000374994.4:c.298T>C	p.Cys100Arg	p.C100R	ENST00000374994	NM_004612.2	100	Tgc/Cgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220488	1220488	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	218	670	0	ENST00000326873.7:c.581A>G	p.Asp194Gly	p.D194G	ENST00000326873	NM_000455.4	194	gAc/gGc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026096	71026096	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	191	383	0	ENST00000318789.4:c.1526G>T	p.Trp509Leu	p.W509L	ENST00000318789	NM_032682.5	509	tGg/tTg																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874263	155874263	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	216	569	0	ENST00000368323.3:c.268A>G	p.Met90Val	p.M90V	ENST00000368323	NM_006912.5	90	Atg/Gtg																																																																															
PARP1	142	MSKCC	GRCh37	1	226549740	226549740	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	181	592	0	ENST00000366794.5:c.2893G>T	p.Asp965Tyr	p.D965Y	ENST00000366794	NM_001618.3	965	Gat/Tat																																																																															
NF1	4763	MSKCC	GRCh37	17	29657391	29657391	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0026987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	205	639	1	ENST00000358273.4:c.5687C>G	p.Ser1896Ter	p.S1896*	ENST00000358273	NM_001042492.2	1896	tCa/tGa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59871029	59871029	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	165	532	0	ENST00000259008.2:c.1402T>A	p.Trp468Arg	p.W468R	ENST00000259008	NM_032043.2	468	Tgg/Agg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18972882	18972882	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	293	678	0	ENST00000262803.5:c.2521T>G	p.Cys841Gly	p.C841G	ENST00000262803	NM_002911.3	841	Tgt/Ggt																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540397	23540434	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	GAGCATCCCGGCGGCCCCGCCTTGGCCTGAATGCACCC	GAGCATCCCGGCGGCCCCGCCTTGGCCTGAATGCACCC	-			P-0026987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	53	359	0	ENST00000380871.4:c.-32_6del		p.*11*	ENST00000380871	NM_006167.3	11																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	172	552	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	324	686	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519930		P-0026988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	257	564	1	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639726	3639726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1523	185	850	2	ENST00000294008.3:c.3913G>A	p.Ala1305Thr	p.A1305T	ENST00000294008	NM_032444.2	1305	Gca/Aca																																																																															
GNAS	2778	MSKCC	GRCh37	20	57480529	57480529	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	72	370	1	ENST00000371085.3:c.524C>A	p.Ala175Asp	p.A175D	ENST00000371085	NM_000516.4	175	gCc/gAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265762	41266317	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAA	TGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAA	-			P-0026988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	35	35	0	ENST00000349496.5:c.13+191_241+74del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
HGF	3082	MSKCC	GRCh37	7	81350164	81350164	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0026988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	41	341	0	ENST00000222390.5:c.1169-1G>T		p.X390_splice	ENST00000222390	NM_000601.4	390																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	131	538	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0026989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	269	938	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																															
ATM	472	MSKCC	GRCh37	11	108216476	108216477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	64	203	1	ENST00000278616.4:c.8432dupA	p.Ser2812ValfsTer3	p.S2812Vfs*3	ENST00000278616	NM_000051.3	2809	caa/cAaa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46125088	46125089	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	112	261	0	ENST00000334344.6:c.277dup	p.Tyr93LeufsTer18	p.Y93Lfs*18	ENST00000334344	NM_152641.2	92	tat/taTt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986656	36986657	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	28	89	0	ENST00000354822.5:c.1032dup	p.Ala345ArgfsTer94	p.A345Rfs*94	ENST00000354822	NM_001079668.2	344	-/C																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870055	40870055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	104	473	0	ENST00000428826.2:c.962G>A	p.Arg321His	p.R321H	ENST00000428826		321	cGc/cAc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31449521	31449521	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	57	238	0	ENST00000344624.3:c.2688del	p.Met897Ter	p.M897*	ENST00000344624		896	gcC/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	86	606	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0026990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	82	439	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0026990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	178	691	0	ENST00000269305.4:c.365_366delTG	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																															
HGF	3082	MSKCC	GRCh37	7	81358955	81358955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	79	593	1	ENST00000222390.5:c.1006G>A	p.Glu336Lys	p.E336K	ENST00000222390	NM_000601.4	336	Gag/Aag																																																																															
FLT3	2322	MSKCC	GRCh37	13	28623903	28623903	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1707	97	473	0	ENST00000241453.7:c.751C>T	p.Gln251Ter	p.Q251*	ENST00000241453	NM_004119.2	251	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174031	112174032	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0026990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	48	410	0	ENST00000257430.4:c.2744_2745del	p.Val915AspfsTer3	p.V915Dfs*3	ENST00000257430	NM_000038.5	914	TGt/t																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	292	409	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	93	327	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	122	673	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	182	334	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs794727798		P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	95	509	0	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11106926	11106928	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1140	109	700	0	ENST00000344626.4:c.1636_1638delAAG	p.Lys546del	p.K546del	ENST00000344626	NM_003072.3	544	cAGAag/cag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125634	47125634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	85	320	0	ENST00000409792.3:c.5636G>A	p.Arg1879His	p.R1879H	ENST00000409792	NM_014159.6	1879	cGc/cAc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962929	2962929	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147006022		P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	83	768	2	ENST00000396946.4:c.1979G>A	p.Arg660Gln	p.R660Q	ENST00000396946	NM_032415.4	660	cGg/cAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267186	41267186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	119	335	0	ENST00000349496.5:c.770C>T	p.Thr257Ile	p.T257I	ENST00000349496	NM_001904.3	257	aCa/aTa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117878	70117888	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCAGGCGGC	GCGCAGGCGGC	-			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	37	385	0	ENST00000245479.2:c.353_363del	p.Ala118GlufsTer130	p.A118Efs*130	ENST00000245479	NM_000346.3	116	GCGCAGGCGGCg/g																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465543	8465543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	283	482	0	ENST00000356435.5:c.3637G>A	p.Gly1213Arg	p.G1213R	ENST00000356435		1213	Gga/Aga																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457402	67457402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	78	530	1	ENST00000327367.4:c.376C>T	p.His126Tyr	p.H126Y	ENST00000327367	NM_005902.3	126	Cac/Tac																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477156	67477156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	128	507	1	ENST00000327367.4:c.964del	p.Gln322SerfsTer19	p.Q322Sfs*19	ENST00000327367	NM_005902.3	321	aaC/aa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477178	67477187	+	frameshift_variant	Frame_Shift_Del	DEL	GCCACCGTCT	GCCACCGTCT	-			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	65	443	0	ENST00000327367.4:c.987_996del	p.Thr330ArgfsTer8	p.T330Rfs*8	ENST00000327367	NM_005902.3	329	GCCACCGTCTgc/gc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3790495	3790496	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	207	528	1	ENST00000262367.5:c.4037dupT	p.Leu1346PhefsTer8	p.L1346Ffs*8	ENST00000262367	NM_004380.2	1346	ttg/ttTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89341299	89341299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	57	159	1	ENST00000301030.4:c.7636G>A	p.Ala2546Thr	p.A2546T	ENST00000301030	NM_001256183.1	2546	Gcc/Acc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374932	45374932	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	288	510	0	ENST00000262160.6:c.911A>G	p.Asp304Gly	p.D304G	ENST00000262160	NM_005901.5	304	gAc/gGc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395643	45395643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	94	444	0	ENST00000262160.6:c.491C>T	p.Pro164Leu	p.P164L	ENST00000262160	NM_005901.5	164	cCt/cTt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41514459	41514459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	88	401	0	ENST00000373198.4:c.202G>T	p.Ala68Ser	p.A68S	ENST00000373198	NM_133170.3	68	Gca/Tca																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71096092	71096092	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	84	210	0	ENST00000318789.4:c.664+1G>A		p.X222_splice	ENST00000318789	NM_032682.5	222																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31508784	31508784	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	148	620	0	ENST00000344624.3:c.1531A>T	p.Lys511Ter	p.K511*	ENST00000344624		511	Aaa/Taa																																																																															
FYN	2534	MSKCC	GRCh37	6	112041022	112041022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	80	360	0	ENST00000368678.4:c.233C>T	p.Thr78Met	p.T78M	ENST00000368678		78	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0026997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	60	549	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0027010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	190	445	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0027018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	162	419	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165084	47165084	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	41	290	1	ENST00000409792.3:c.1042G>T	p.Glu348Ter	p.E348*	ENST00000409792	NM_014159.6	348	Gaa/Taa																																																																															
AKT2	208	MSKCC	GRCh37	19	40742005	40742005	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	189	485	0	ENST00000392038.2:c.967G>C	p.Glu323Gln	p.E323Q	ENST00000392038	NM_001626.4	323	Gag/Cag																																																																															
POLE	5426	MSKCC	GRCh37	12	133219161	133219161	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	85	622	0	ENST00000320574.5:c.4883G>T	p.Gly1628Val	p.G1628V	ENST00000320574	NM_006231.2	1628	gGa/gTa																																																																															
RB1	5925	MSKCC	GRCh37	13	48947628	48947628	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0027018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	62	269	0	ENST00000267163.4:c.1215C>A	p.Asn405Lys	p.N405K	ENST00000267163	NM_000321.2	405	aaC/aaA																																																																															
FLCN	201163	MSKCC	GRCh37	17	17118339	17118339	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	258	558	0	ENST00000285071.4:c.1498del	p.Val500TrpfsTer13	p.V500Wfs*13	ENST00000285071	NM_144997.5	500	Gtg/tg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602761	10602761	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	208	647	0	ENST00000171111.5:c.817T>C	p.Cys273Arg	p.C273R	ENST00000171111	NM_203500.1	273	Tgc/Cgc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39285875	39285875	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	89	429	0	ENST00000402219.2:c.284A>G	p.Glu95Gly	p.E95G	ENST00000402219	NM_005633.3	95	gAa/gGa																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62317148	62317148	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	287	587	0	ENST00000508582.2:c.1343A>G	p.His448Arg	p.H448R	ENST00000508582		448	cAc/cGc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098547	47098547	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	63	363	0	ENST00000409792.3:c.6727C>T	p.Gln2243Ter	p.Q2243*	ENST00000409792	NM_014159.6	2243	Cag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041432	47041433	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	159	223	0	ENST00000329236.7:c.1542_1543insT	p.Asn515Ter	p.N515*	ENST00000329236	NM_001204466.1	514	-/T																																																																															
CASP8	841	MSKCC	GRCh37	2	202139642	202139642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	77	359	1	ENST00000358485.4:c.803C>T	p.Ser268Leu	p.S268L	ENST00000358485	NM_001080125.1	268	tCg/tTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661126	227661126	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	89	544	1	ENST00000305123.5:c.2329C>A	p.Pro777Thr	p.P777T	ENST00000305123	NM_005544.2	777	Ccc/Acc																																																																															
MED12	9968	MSKCC	GRCh37	X	70348538	70348538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	37	257	0	ENST00000374080.3:c.3445T>C	p.Cys1149Arg	p.C1149R	ENST00000374080		1149	Tgt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	79	367	1	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0027039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	37	418	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	126	553	1	ENST00000269305.4:c.523C>T	p.Arg175Cys	p.R175C	ENST00000269305	NM_001126112.2	175	Cgc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302307	15302307	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115029695		P-0027039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	65	726	1	ENST00000263388.2:c.964G>A	p.Val322Met	p.V322M	ENST00000263388	NM_000435.2	322	Gtg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443902	49443902	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	142	658	2	ENST00000301067.7:c.3469C>A	p.Pro1157Thr	p.P1157T	ENST00000301067	NM_003482.3	1157	Ccc/Acc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71161772	71161772	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	29	365	0	ENST00000318789.4:c.197G>C	p.Arg66Thr	p.R66T	ENST00000318789	NM_032682.5	66	aGa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0027047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	660	693	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46251038	46251038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1238	435	498	0	ENST00000371998.3:c.47G>A	p.Arg16Gln	p.R16Q	ENST00000371998		16	cGa/cAa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28622457	28622457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	442	642	0	ENST00000241453.7:c.1160G>A	p.Arg387Gln	p.R387Q	ENST00000241453	NM_004119.2	387	cGa/cAa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692790	89692790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	246	384	0	ENST00000371953.3:c.274G>A	p.Asp92Asn	p.D92N	ENST00000371953	NM_000314.4	92	Gac/Aac																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638725	176638725	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	562	723	1	ENST00000439151.2:c.3325C>A	p.His1109Asn	p.H1109N	ENST00000439151	NM_022455.4	1109	Cat/Aat																																																																															
EP300	2033	MSKCC	GRCh37	22	41558779	41558779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	342	538	0	ENST00000263253.7:c.3724G>A	p.Glu1242Lys	p.E1242K	ENST00000263253	NM_001429.3	1242	Gaa/Aaa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932158	36932158	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	709	543	0	ENST00000361632.4:c.2311G>C	p.Asp771His	p.D771H	ENST00000361632		771	Gac/Cac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425670	49425679	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCCTGTCT	GGGCCTGTCT	-			P-0027047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	521	600	0	ENST00000301067.7:c.12809_12818del	p.Gln4270ProfsTer5	p.Q4270Pfs*5	ENST00000301067	NM_003482.3	4270	cAGACAGGCCCc/cc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37871782	37871782	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	522	698	0	ENST00000269571.5:c.1306C>G	p.Leu436Val	p.L436V	ENST00000269571		436	Ctg/Gtg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38282089	38282089	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	627	720	0	ENST00000425967.3:c.967C>A	p.His323Asn	p.H323N	ENST00000425967	NM_001174067.1	323	Cac/Aac																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300846	137300846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	291	700	4	ENST00000481739.1:c.491G>A	p.Arg164His	p.R164H	ENST00000481739	NM_002957.4	164	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	303	574	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499483	89499483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	62	448	0	ENST00000336596.2:c.2653C>T	p.Pro885Ser	p.P885S	ENST00000336596	NM_005233.5	885	Ccc/Tcc																																																																															
ATRX	546	MSKCC	GRCh37	X	76813092	76813092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	73	524	0	ENST00000373344.5:c.6529G>A	p.Asp2177Asn	p.D2177N	ENST00000373344	NM_000489.3	2177	Gat/Aat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465638	8465638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	35	425	0	ENST00000356435.5:c.3542G>A	p.Arg1181His	p.R1181H	ENST00000356435		1181	cGt/cAt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78727982	78727982	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	157	291	0	ENST00000306801.3:c.827G>T	p.Arg276Leu	p.R276L	ENST00000306801	NM_020761.2	276	cGc/cTc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98248085	98248085	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	194	515	1	ENST00000331920.6:c.466C>T	p.Gln156Ter	p.Q156*	ENST00000331920	NM_000264.3	156	Caa/Taa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992258	72992258	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	221	680	0	ENST00000268489.5:c.1787A>G	p.Asn596Ser	p.N596S	ENST00000268489	NM_006885.3	596	aAt/aGt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025871	48025871	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	90	398	1	ENST00000234420.5:c.749T>A	p.Val250Asp	p.V250D	ENST00000234420	NM_000179.2	250	gTc/gAc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098933	178098933	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	145	345	0	ENST00000397062.3:c.112G>C	p.Asp38His	p.D38H	ENST00000397062	NM_006164.4	38	Gac/Cac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100998	41100998	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	267	485	1	ENST00000373198.4:c.1358G>T	p.Arg453Leu	p.R453L	ENST00000373198	NM_133170.3	453	cGc/cTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89462338	89462338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	62	530	0	ENST00000336596.2:c.1810G>A	p.Asp604Asn	p.D604N	ENST00000336596	NM_005233.5	604	Gac/Aac																																																																															
ATR	545	MSKCC	GRCh37	3	142231120	142231120	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	314	437	0	ENST00000350721.4:c.4834A>C	p.Asn1612His	p.N1612H	ENST00000350721	NM_001184.3	1612	Aat/Cat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928069	178928098	+	inframe_deletion	In_Frame_Del	DEL	TCATGGATTAGAAGATTTGCTGAACCCTAT	TCATGGATTAGAAGATTTGCTGAACCCTAT	-			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	237	511	0	ENST00000263967.3:c.1348_1377del	p.His450_Ile459del	p.H450_I459del	ENST00000263967	NM_006218.2	449	ccTCATGGATTAGAAGATTTGCTGAACCCTATt/cct																																																																															
MED12	9968	MSKCC	GRCh37	X	70350065	70350065	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	219	345	0	ENST00000374080.3:c.4047+1G>T		p.X1349_splice	ENST00000374080		1349																																																																																
STAG2	10735	MSKCC	GRCh37	X	123179167	123179168	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	49	453	0	ENST00000218089.9:c.616_617delinsTT	p.Gly206Leu	p.G206L	ENST00000218089	NM_001042749.1	206	GGa/TTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928100	178928100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	241	463	0	ENST00000263967.3:c.1378G>A	p.Gly460Ser	p.G460S	ENST00000263967	NM_006218.2	460	Ggt/Agt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0014997-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	545	600	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0014997-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	292	500	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51436117	51436117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014997-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			814	79	387	0	ENST00000262662.1:c.77A>G	p.Gln26Arg	p.Q26R	ENST00000262662		26	cAa/cGa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435692	110435692	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014997-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			514	106	525	0	ENST00000375856.3:c.2709C>A	p.Ser903Arg	p.S903R	ENST00000375856	NM_003749.2	903	agC/agA																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0026855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	140	303	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	274	432	0	ENST00000291552.4:c.101C>A	p.Ser34Tyr	p.S34Y	ENST00000291552	NM_006758.2	34	tCt/tAt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118744	115118745	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAT			P-0026855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1439	374	666	0	ENST00000257566.3:c.596_597insATC	p.Ser199dup	p.S199dup	ENST00000257566	NM_016569.3	199	tcc/tcATCc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046524	30046524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	398	616	2	ENST00000331968.5:c.2659C>T	p.Pro887Ser	p.P887S	ENST00000331968	NM_002742.2	887	Cca/Tca																																																																															
APC	324	MSKCC	GRCh37	5	112176520	112176521	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	307	429	0	ENST00000257430.4:c.5234dup	p.Ile1746AspfsTer23	p.I1746Dfs*23	ENST00000257430	NM_000038.5	1743	-/A																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255281	16255281	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	136	624	0	ENST00000375759.3:c.2549del	p.Lys850SerfsTer8	p.K850Sfs*8	ENST00000375759	NM_015001.2	849	gAa/ga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057937	27057937	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	129	635	1	ENST00000324856.7:c.1650delC	p.Tyr551ThrfsTer68	p.Y551Tfs*68	ENST00000324856	NM_006015.4	549	Ccc/cc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	81	423	3	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748053	72748053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	144	638	1	ENST00000357731.5:c.125G>T	p.Trp42Leu	p.W42L	ENST00000357731	NM_173808.2	42	tGg/tTg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78432759	78432759	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200979131		P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	110	454	0	ENST00000370768.2:c.317A>G	p.Lys106Arg	p.K106R	ENST00000370768	NM_003902.3	106	aAa/aGa																																																																															
RIT1	6016	MSKCC	GRCh37	1	155880515	155880515	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	159	627	1	ENST00000368323.3:c.38G>T	p.Ser13Ile	p.S13I	ENST00000368323	NM_006912.5	13	aGc/aTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	109	604	3	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	55	359	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
WT1	7490	MSKCC	GRCh37	11	32456626	32456626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	91	323	0	ENST00000332351.3:c.266G>A	p.Gly89Asp	p.G89D	ENST00000332351	NM_024426.4	89	gGc/gAc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94197281	94197282	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	49	374	0	ENST00000323929.3:c.1222dup	p.Thr408AsnfsTer49	p.T408Nfs*49	ENST00000323929	NM_005591.3	408	aca/aAca																																																																															
PGR	5241	MSKCC	GRCh37	11	100998709	100998709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	181	776	0	ENST00000325455.5:c.1093C>T	p.Pro365Ser	p.P365S	ENST00000325455	NM_001202474.3	365	Ccc/Tcc																																																																															
ATM	472	MSKCC	GRCh37	11	108205757	108205757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	82	474	0	ENST00000278616.4:c.8072G>A	p.Arg2691His	p.R2691H	ENST00000278616	NM_000051.3	2691	cGc/cAc																																																																															
RAB35	11021	MSKCC	GRCh37	12	120546244	120546244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	169	695	1	ENST00000229340.5:c.80G>A	p.Arg27His	p.R27H	ENST00000229340	NM_006861.6	27	cGt/cAt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046602	30046602	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	107	575	0	ENST00000331968.5:c.2581A>G	p.Thr861Ala	p.T861A	ENST00000331968	NM_002742.2	861	Acc/Gcc																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872461	35872461	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	136	510	1	ENST00000216797.5:c.442del	p.Leu148TyrfsTer16	p.L148Yfs*16	ENST00000216797	NM_020529.2	148	Cta/ta																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	164	768	1	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																																																															
BLM	641	MSKCC	GRCh37	15	91306293	91306294	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	84	465	1	ENST00000355112.3:c.1986dup	p.Phe663IlefsTer5	p.F663Ifs*5	ENST00000355112	NM_000057.2	660	-/A																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	112	652	2	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2094711	2094711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	191	872	1	ENST00000219066.1:c.469C>T	p.Arg157Trp	p.R157W	ENST00000219066	NM_002528.5	157	Cgg/Tgg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858637	9858637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	105	437	0	ENST00000330684.3:c.2764G>A	p.Ala922Thr	p.A922T	ENST00000330684	NM_001134407.1	922	Gct/Act																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30128304	30128304	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	63	691	0	ENST00000263025.4:c.928A>G	p.Met310Val	p.M310V	ENST00000263025	NM_002746.2	310	Atg/Gtg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825518	50825518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	84	528	1	ENST00000398568.2:c.2149G>A	p.Glu717Lys	p.E717K	ENST00000398568	NM_001042412.1	717	Gaa/Aaa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	22	293	1	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961294	15961294	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	50	555	1	ENST00000268712.3:c.6095del	p.Pro2032LeufsTer17	p.P2032Lfs*17	ENST00000268712	NM_006311.3	2032	cCt/ct																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	57	515	1	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16047005	16047005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	78	455	0	ENST00000268712.3:c.1088G>T	p.Gly363Val	p.G363V	ENST00000268712	NM_006311.3	363	gGg/gTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16052795	16052795	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	66	458	0	ENST00000268712.3:c.879del	p.Phe293LeufsTer33	p.F293Lfs*33	ENST00000268712	NM_006311.3	293	ttT/tt																																																																															
NF1	4763	MSKCC	GRCh37	17	29683546	29683546	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	82	545	0	ENST00000358273.4:c.7684G>T	p.Gly2562Trp	p.G2562W	ENST00000358273	NM_001042492.2	2562	Ggg/Tgg																																																																															
RARA	5914	MSKCC	GRCh37	17	38512401	38512402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs745553450		P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	50	635	2	ENST00000254066.5:c.1319dup	p.Pro441AlafsTer5	p.P441Afs*5	ENST00000254066	NM_000964.3	438	gcc/gCcc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40858095	40858095	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	218	773	0	ENST00000428826.2:c.1769G>T	p.Gly590Val	p.G590V	ENST00000428826		590	gGg/gTg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760676	59760676	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	35	617	0	ENST00000259008.2:c.3731T>G	p.Met1244Arg	p.M1244R	ENST00000259008	NM_032043.2	1244	aTg/aGg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	155	555	2	ENST00000245479.2:c.916delG	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223239	5223239	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	202	752	3	ENST00000357368.4:c.2564del	p.Pro855ArgfsTer67	p.P855Rfs*67	ENST00000357368	NM_002850.3	855	cCg/cg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30303663	30303663	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	164	618	0	ENST00000262643.3:c.91A>G	p.Arg31Gly	p.R31G	ENST00000262643	NM_001238.2	31	Agg/Ggg																																																																															
CIC	23152	MSKCC	GRCh37	19	42791591	42791592	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	160	561	0	ENST00000575354.2:c.576dup	p.Asn193GlnfsTer122	p.N193Qfs*122	ENST00000575354	NM_015125.3	191	agc/agCc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	236	499	7	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																															
REL	5966	MSKCC	GRCh37	2	61147602	61147602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	11	55	0	ENST00000295025.8:c.1007C>A	p.Ala336Asp	p.A336D	ENST00000295025	NM_002908.2	336	gCt/gAt																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	127	763	1	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164218	47164218	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	72	420	0	ENST00000409792.3:c.1908delT	p.Phe636LeufsTer6	p.F636Lfs*6	ENST00000409792	NM_014159.6	636	ttT/tt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940111	49940111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	122	653	3	ENST00000296474.3:c.932C>G	p.Ala311Gly	p.A311G	ENST00000296474	NM_002447.2	311	gCc/gGc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52595976	52595977	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	93	410	0	ENST00000394830.3:c.3938dup	p.Ser1315ValfsTer26	p.S1315Vfs*26	ENST00000394830	NM_018313.4	1313	cca/ccCa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021754	71021754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	95	453	0	ENST00000318789.4:c.1604C>T	p.Thr535Ile	p.T535I	ENST00000318789	NM_032682.5	535	aCa/aTa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31508780	31508780	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	178	698	0	ENST00000344624.3:c.1535delA	p.Lys512ArgfsTer19	p.K512Rfs*19	ENST00000344624		512	aAg/ag																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	90	579	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175945	112175945	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	61	274	0	ENST00000257430.4:c.4654G>T	p.Glu1552Ter	p.E1552*	ENST00000257430	NM_000038.5	1552	Gag/Tag																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149433745	149433745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	158	772	0	ENST00000286301.3:c.2806G>A	p.Gly936Ser	p.G936S	ENST00000286301	NM_005211.3	936	Ggc/Agc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324917	31324917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	127	288	0	ENST00000412585.2:c.19delC	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000412585	NM_005514.6	7	Cga/ga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	82	548	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TEK	7010	MSKCC	GRCh37	9	27213579	27213579	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	114	599	0	ENST00000380036.4:c.2975A>T	p.Tyr992Phe	p.Y992F	ENST00000380036	NM_000459.3	992	tAt/tTt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635191	87635191	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367769334		P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	134	561	3	ENST00000277120.3:c.2243C>T	p.Thr748Met	p.T748M	ENST00000277120		748	aCg/aTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041561	47041561	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	132	332	0	ENST00000329236.7:c.1552T>C	p.Tyr518His	p.Y518H	ENST00000329236	NM_001204466.1	518	Tat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	169	445	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0026911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	246	570	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171735	36171735	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	108	375	1	ENST00000300305.3:c.830del	p.Pro277HisfsTer34	p.P277Hfs*34	ENST00000300305		277	cCa/ca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447282	49447289	+	frameshift_variant	Frame_Shift_Del	DEL	TTCAGGGC	TTCAGGGC	-			P-0026916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	108	476	0	ENST00000301067.7:c.809_816del	p.Cys270LeufsTer13	p.C270Lfs*13	ENST00000301067	NM_003482.3	270	tGCCCTGAA/t																																																																															
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	217	589	1	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023006	27023006	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	75	53	0	ENST00000324856.7:c.112G>T	p.Glu38Ter	p.E38*	ENST00000324856	NM_006015.4	38	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916926	178916937	+	inframe_deletion	In_Frame_Del	DEL	GTAGGCAACCGT	GTAGGCAACCGT	-			P-0026917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	61	511	0	ENST00000263967.3:c.314_325del	p.Val105_Arg108del	p.V105_R108del	ENST00000263967	NM_006218.2	105	GTAGGCAACCGT/-																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748389	43748389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	38	648	0	ENST00000382044.4:c.2417G>C	p.Arg806Thr	p.R806T	ENST00000382044	NM_001141980.1	806	aGa/aCa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66777399	66777399	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	34	640	0	ENST00000307102.5:c.765G>C	p.Glu255Asp	p.E255D	ENST00000307102	NM_002755.3	255	gaG/gaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	85	524	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0026928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	70	436	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0026928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	92	372	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66233140	66233140	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	64	447	0	ENST00000273854.3:c.1859G>A	p.Arg620Gln	p.R620Q	ENST00000273854	NM_004439.5	620	cGg/cAg																																																																															
ATM	472	MSKCC	GRCh37	11	108121762	108121762	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	79	485	0	ENST00000278616.4:c.1570T>C	p.Trp524Arg	p.W524R	ENST00000278616	NM_000051.3	524	Tgg/Cgg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99482477	99482477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	111	604	0	ENST00000268035.6:c.3345G>A	p.Met1115Ile	p.M1115I	ENST00000268035	NM_000875.3	1115	atG/atA																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533838	63533838	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	115	548	0	ENST00000307078.5:c.1316T>C	p.Leu439Pro	p.L439P	ENST00000307078	NM_004655.3	439	cTg/cCg																																																																															
APC	324	MSKCC	GRCh37	5	112157642	112157643	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	81	538	0	ENST00000257430.4:c.1365dup	p.Leu456ThrfsTer4	p.L456Tfs*4	ENST00000257430	NM_000038.5	454	-/A																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041379	47041379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	103	755	1	ENST00000329236.7:c.1489G>A	p.Asp497Asn	p.D497N	ENST00000329236	NM_001204466.1	497	Gat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	34	621	0	ENST00000263967.3:c.1636C>G	p.Gln546Glu	p.Q546E	ENST00000263967	NM_006218.2	546	Cag/Gag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006898	47006898	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0026932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	159	706	0	ENST00000329236.7:c.17+1G>T		p.X6_splice	ENST00000329236	NM_001204466.1	6																																																																																
PTEN	5728	MSKCC	GRCh37	10	89720876	89720876	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0026932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	28	305	0	ENST00000371953.3:c.1026+1G>A		p.X342_splice	ENST00000371953	NM_000314.4	342																																																																																
POLE	5426	MSKCC	GRCh37	12	133219552	133219552	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	121	558	0	ENST00000320574.5:c.4582G>C	p.Ala1528Pro	p.A1528P	ENST00000320574	NM_006231.2	1528	Gcc/Ccc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162374	47162374	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	82	316	0	ENST00000409792.3:c.3752C>A	p.Ser1251Ter	p.S1251*	ENST00000409792	NM_014159.6	1251	tCa/tAa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450244	50450244	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	93	404	0	ENST00000331340.3:c.428G>C	p.Arg143Pro	p.R143P	ENST00000331340	NM_006060.4	143	cGg/cCg																																																																															
ABL1	25	MSKCC	GRCh37	9	133730188	133730188	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0026932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	119	468	0	ENST00000318560.5:c.254G>T	p.Gly85Val	p.G85V	ENST00000318560	NM_005157.4	85	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0026933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	494	644	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	38	271	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916205	9916205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	161	500	1	ENST00000330684.3:c.2084G>A	p.Arg695Gln	p.R695Q	ENST00000330684	NM_001134407.1	695	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112174949	112174949	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	135	222	0	ENST00000257430.4:c.3658del	p.Thr1220HisfsTer45	p.T1220Hfs*45	ENST00000257430	NM_000038.5	1220	Aca/ca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0026936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	154	480	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0026936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	242	804	1	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0026936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	190	626	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134230	2134230	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs148527903		P-0026944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	94	403	0	ENST00000219476.3:c.4007C>T	p.Ser1336Leu	p.S1336L	ENST00000219476	NM_000548.3	1336	tCg/tTg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437795	52437795	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	109	497	0	ENST00000460680.1:c.1366del	p.Gln456ArgfsTer115	p.Q456Rfs*115	ENST00000460680	NM_004656.3	456	Cag/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	49	583	0	ENST00000269305.4:c.528C>A	p.Cys176Ter	p.C176*	ENST00000269305	NM_001126112.2	176	tgC/tgA																																																																															
RB1	5925	MSKCC	GRCh37	13	48934251	48934251	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0026949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	54	447	0	ENST00000267163.4:c.706A>T	p.Lys236Ter	p.K236*	ENST00000267163	NM_000321.2	236	Aaa/Taa																																																																															
STK11	6794	MSKCC	GRCh37	19	1219378	1219378	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	57	586	0	ENST00000326873.7:c.431del	p.Pro144ArgfsTer17	p.P144Rfs*17	ENST00000326873	NM_000455.4	144	Ccg/cg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0026954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	2500	487	2	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038563	47038563	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0026954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	81	472	0	ENST00000329236.7:c.493+1G>T		p.X165_splice	ENST00000329236	NM_001204466.1	165																																																																																
RB1	5925	MSKCC	GRCh37	13	49037866	49037866	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0026954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	42	225	0	ENST00000267163.4:c.2107-1G>C		p.X703_splice	ENST00000267163	NM_000321.2	703																																																																																
TP53	7157	MSKCC	GRCh37	17	7578220	7578220	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	117	467	0	ENST00000269305.4:c.629del	p.Asn210ThrfsTer37	p.N210Tfs*37	ENST00000269305	NM_001126112.2	210	aAc/ac																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223928	2223928	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	63	415	0	ENST00000326181.6:c.1142A>T	p.Asp381Val	p.D381V	ENST00000326181	NM_032271.2	381	gAc/gTc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786417	135786418	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0026954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	55	437	0	ENST00000298552.3:c.1112_1113del	p.His371ProfsTer4	p.H371Pfs*4	ENST00000298552	NM_001162426.1	371	cAC/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0026955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	199	481	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175240	112175240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	101	200	0	ENST00000257430.4:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000257430	NM_000038.5	1317	Gaa/Taa																																																																															
RET	5979	MSKCC	GRCh37	10	43606814	43606814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	164	594	0	ENST00000355710.3:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000355710	NM_020975.4	475	Cgg/Tgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710677	114710678	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	135	374	0	ENST00000543371.1:c.164dupA	p.Asn55LysfsTer42	p.N55Kfs*42	ENST00000543371	NM_001198531.1	54	-/A																																																																															
ATM	472	MSKCC	GRCh37	11	108198486	108198486	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0026955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	171	287	0	ENST00000278616.4:c.7089+1G>C		p.X2363_splice	ENST00000278616	NM_000051.3	2363																																																																																
JAK3	3718	MSKCC	GRCh37	19	17945418	17945419	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0026955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	84	562	0	ENST00000458235.1:c.2311_2312del	p.Arg771SerfsTer5	p.R771Sfs*5	ENST00000458235	NM_000215.3	771	CGa/a																																																																															
APC	324	MSKCC	GRCh37	5	112176200	112176200	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	28	339	0	ENST00000257430.4:c.4909G>T	p.Asp1637Tyr	p.D1637Y	ENST00000257430	NM_000038.5	1637	Gat/Tat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0026957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	64	270	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921567	178921567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	46	199	0	ENST00000263967.3:c.1049A>G	p.Asp350Gly	p.D350G	ENST00000263967	NM_006218.2	350	gAc/gGc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851315	156851315	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62640939		P-0026957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	82	504	1	ENST00000524377.1:c.2272G>A	p.Ala758Thr	p.A758T	ENST00000524377	NM_002529.3	758	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211360	36211360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	136	617	0	ENST00000222270.7:c.1111G>A	p.Glu371Lys	p.E371K	ENST00000222270	NM_014727.1	371	Gaa/Aaa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1961351	1961351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	115	462	0	ENST00000382891.5:c.3139C>T	p.Pro1047Ser	p.P1047S	ENST00000382891	NM_133335.3	1047	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577587	7577587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	371	498	0	ENST00000269305.4:c.694del	p.Ile232SerfsTer15	p.I232Sfs*15	ENST00000269305	NM_001126112.2	232	Atc/tc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346277	89346277	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	49	250	0	ENST00000301030.4:c.6673A>C	p.Thr2225Pro	p.T2225P	ENST00000301030	NM_001256183.1	2225	Acg/Ccg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	41	520	0	ENST00000269305.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000269305	NM_001126112.2	273	Cgt/Agt																																																																															
CDK6	1021	MSKCC	GRCh37	7	92462547	92462547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	31	521	0	ENST00000265734.4:c.91C>A	p.Arg31Ser	p.R31S	ENST00000265734	NM_001259.6	31	Cgc/Agc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0026961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	204	426	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	133	341	1	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
WT1	7490	MSKCC	GRCh37	11	32421590	32421590	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0026961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	100	324	0	ENST00000332351.3:c.1002C>A	p.Asn334Lys	p.N334K	ENST00000332351	NM_024426.4	334	aaC/aaA																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30047528	30047528	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0026961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	70	286	0	ENST00000331968.5:c.2473A>T	p.Arg825Ter	p.R825*	ENST00000331968	NM_002742.2	825	Aga/Tga																																																																															
AKT1	207	MSKCC	GRCh37	14	105242036	105242046	+	frameshift_variant	Frame_Shift_Del	DEL	CTGAGTTGTCA	CTGAGTTGTCA	-			P-0026961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	43	505	0	ENST00000349310.3:c.378_388del	p.Ser126ArgfsTer3	p.S126Rfs*3	ENST00000349310	NM_001014432.1	126	agTGACAACTCAGgg/aggg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678587	88678587	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	17	223	0	ENST00000360948.2:c.949C>A	p.Leu317Met	p.L317M	ENST00000360948	NM_001012338.2	317	Ctg/Atg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680793	88680793	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0026961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	44	403	0	ENST00000360948.2:c.465-1G>T		p.X155_splice	ENST00000360948	NM_001012338.2	155																																																																																
PAK7	57144	MSKCC	GRCh37	20	9561364	9561364	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	61	280	0	ENST00000353224.5:c.418G>T	p.Asp140Tyr	p.D140Y	ENST00000353224	NM_177990.2	140	Gac/Tac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468458	89468458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	39	241	0	ENST00000336596.2:c.1992G>T	p.Arg664Ser	p.R664S	ENST00000336596	NM_005233.5	664	agG/agT																																																																															
MED12	9968	MSKCC	GRCh37	X	70344164	70344164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	46	356	0	ENST00000374080.3:c.1900C>T	p.Pro634Ser	p.P634S	ENST00000374080		634	Ccc/Tcc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	71	321	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	46	310	1	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	53	337	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	49	496	1	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	43	293	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	52	351	1	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	49	337	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	90	606	2	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	166	503	2	ENST00000407977.2:c.349delC	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43748552	43748552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	70	365	0	ENST00000523873.1:c.506C>T	p.Ala169Val	p.A169V	ENST00000523873		169	gCc/gTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	16	68	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952088	178952088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	45	276	0	ENST00000263967.3:c.3143A>G	p.His1048Arg	p.H1048R	ENST00000263967	NM_006218.2	1048	cAt/cGt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017724	31017724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	45	363	0	ENST00000375687.4:c.586G>A	p.Asp196Asn	p.D196N	ENST00000375687	NM_015338.5	196	Gat/Aat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991706	72991706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	53	191	0	ENST00000268489.5:c.2339C>T	p.Ala780Val	p.A780V	ENST00000268489	NM_006885.3	780	gCg/gTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100302	157100302	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	23	262	0	ENST00000346085.5:c.1243delG	p.Ala415ProfsTer15	p.A415Pfs*15	ENST00000346085	NM_020732.3	413	tcG/tc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243878	46243878	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	46	227	0	ENST00000334344.6:c.1972C>T	p.Gln658Ter	p.Q658*	ENST00000334344	NM_152641.2	658	Caa/Taa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538941	187538941	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	58	305	2	ENST00000441802.2:c.8799delA	p.Gly2934ValfsTer3	p.G2934Vfs*3	ENST00000441802	NM_005245.3	2933	caA/ca																																																																															
GNAS	2778	MSKCC	GRCh37	20	57466824	57466824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	66	334	0	ENST00000371085.3:c.43G>A	p.Glu15Lys	p.E15K	ENST00000371085	NM_000516.4	15	Gag/Aag																																																																															
B2M	567	MSKCC	GRCh37	15	45007806	45007807	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	78	327	0	ENST00000558401.1:c.253_254del	p.Leu85ValfsTer4	p.L85Vfs*4	ENST00000558401	NM_004048.2	85	TTg/g																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	74	567	0	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214871	36214871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	113	561	3	ENST00000222270.7:c.3302del	p.Pro1101LeufsTer81	p.P1101Lfs*81	ENST00000222270	NM_014727.1	1099	ggC/gg																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39325282	39325282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	65	395	0	ENST00000373001.3:c.37G>A	p.Ala13Thr	p.A13T	ENST00000373001	NM_022157.3	13	Gcc/Acc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444987	49444987	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	82	419	2	ENST00000301067.7:c.2479del	p.Gln827AsnfsTer103	p.Q827Nfs*103	ENST00000301067	NM_003482.3	827	Caa/aa																																																																															
MED12	9968	MSKCC	GRCh37	X	70343445	70343445	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	58	318	0	ENST00000374080.3:c.1619G>A	p.Arg540His	p.R540H	ENST00000374080		540	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087536	27087536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	155	487	0	ENST00000324856.7:c.2110G>A	p.Ala704Thr	p.A704T	ENST00000324856	NM_006015.4	704	Gcc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105988	27105988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	53	342	0	ENST00000324856.7:c.5599C>T	p.Pro1867Ser	p.P1867S	ENST00000324856	NM_006015.4	1867	Cct/Tct																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106063	8106063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	44	452	0	ENST00000346208.3:c.883G>A	p.Gly295Arg	p.G295R	ENST00000346208		295	Gga/Aga																																																																															
WT1	7490	MSKCC	GRCh37	11	32456824	32456824	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751641518		P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	57	521	1	ENST00000332351.3:c.68G>A	p.Gly23Glu	p.G23E	ENST00000332351	NM_024426.4	23	gGg/gAg																																																																															
PGR	5241	MSKCC	GRCh37	11	100922177	100922177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	34	355	0	ENST00000325455.5:c.2335G>T	p.Ala779Ser	p.A779S	ENST00000325455	NM_001202474.3	779	Gca/Tca																																																																															
ATM	472	MSKCC	GRCh37	11	108117840	108117841	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	32	247	1	ENST00000278616.4:c.1051_1052delinsTT	p.Asp351Phe	p.D351F	ENST00000278616	NM_000051.3	351	GAt/TTt																																																																															
ATM	472	MSKCC	GRCh37	11	108192057	108192057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	78	361	1	ENST00000278616.4:c.6482G>A	p.Arg2161His	p.R2161H	ENST00000278616	NM_000051.3	2161	cGc/cAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28893647	28893647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	56	324	0	ENST00000282397.4:c.3199G>A	p.Ala1067Thr	p.A1067T	ENST00000282397	NM_002019.4	1067	Gct/Act																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133968	41133968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	79	366	0	ENST00000379561.5:c.1660C>T	p.Arg554Cys	p.R554C	ENST00000379561	NM_002015.3	554	Cgc/Tgc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66774177	66774177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	111	744	0	ENST00000307102.5:c.653C>A	p.Ser218Tyr	p.S218Y	ENST00000307102	NM_002755.3	218	tCc/tAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993602	72993602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	56	389	0	ENST00000268489.5:c.443G>A	p.Ser148Asn	p.S148N	ENST00000268489	NM_006885.3	148	aGc/aAc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266124	198266124	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	54	259	0	ENST00000335508.6:c.2496G>T	p.Gln832His	p.Q832H	ENST00000335508	NM_012433.2	832	caG/caT																																																																															
CASP8	841	MSKCC	GRCh37	2	202149789	202149789	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	83	390	0	ENST00000358485.4:c.1230A>C	p.Lys410Asn	p.K410N	ENST00000358485	NM_001080125.1	410	aaA/aaC																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017142	31017142	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	60	228	0	ENST00000375687.4:c.473C>T	p.Ala158Val	p.A158V	ENST00000375687	NM_015338.5	158	gCg/gTg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259387	36259387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	95	388	0	ENST00000300305.3:c.104G>A	p.Ser35Asn	p.S35N	ENST00000300305		35	aGc/aAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41525977	41525977	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	75	395	0	ENST00000263253.7:c.1256del	p.Asn419MetfsTer12	p.N419Mfs*12	ENST00000263253	NM_001429.3	418	Aaa/aa																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665540	138665540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	42	289	0	ENST00000330315.3:c.25G>A	p.Glu9Lys	p.E9K	ENST00000330315	NM_023067.3	9	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928284	178928285	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	63	313	0	ENST00000263967.3:c.1470_1471del	p.Val491AspfsTer2	p.V491Dfs*2	ENST00000263967	NM_006218.2	490	tcAGtg/tctg																																																																															
MSH3	4437	MSKCC	GRCh37	5	80057422	80057423	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	60	279	0	ENST00000265081.6:c.1824dup	p.Gly609TrpfsTer9	p.G609Wfs*9	ENST00000265081	NM_002439.4	607	-/T																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982045	93982045	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	47	272	0	ENST00000369303.4:c.1420A>G	p.Thr474Ala	p.T474A	ENST00000369303	NM_004440.3	474	Aca/Gca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465503	8465503	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	50	400	1	ENST00000356435.5:c.3677T>C	p.Val1226Ala	p.V1226A	ENST00000356435		1226	gTc/gCc																																																																															
PAX5	5079	MSKCC	GRCh37	9	37002660	37002660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	69	322	0	ENST00000358127.4:c.589C>T	p.Arg197Cys	p.R197C	ENST00000358127	NM_001280556.1	197	Cgc/Tgc																																																																															
ABL1	25	MSKCC	GRCh37	9	133759980	133759980	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	115	673	1	ENST00000318560.5:c.2303G>T	p.Gly768Val	p.G768V	ENST00000318560	NM_005157.4	768	gGg/gTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411476	63411476	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	63	604	0	ENST00000330258.3:c.1691T>C	p.Ile564Thr	p.I564T	ENST00000330258	NM_152424.3	564	aTc/aCc																																																																															
MED12	9968	MSKCC	GRCh37	X	70344934	70344934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	63	486	1	ENST00000374080.3:c.2164C>A	p.Leu722Ile	p.L722I	ENST00000374080		722	Ctt/Att																																																																															
ATRX	546	MSKCC	GRCh37	X	76938395	76938395	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	89	461	0	ENST00000373344.5:c.2353A>G	p.Thr785Ala	p.T785A	ENST00000373344	NM_000489.3	785	Aca/Gca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	65	470	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0026963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	40	340	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
MPL	4352	MSKCC	GRCh37	1	43812538	43812538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	205	613	0	ENST00000372470.3:c.1241C>T	p.Ser414Leu	p.S414L	ENST00000372470	NM_005373.2	414	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	213	686	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115111972	115111972	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	165	706	0	ENST00000257566.3:c.1768C>T	p.Gln590Ter	p.Q590*	ENST00000257566	NM_016569.3	590	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023696	27023696	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	136	430	0	ENST00000324856.7:c.802C>T	p.Gln268Ter	p.Q268*	ENST00000324856	NM_006015.4	268	Cag/Tag																																																																															
RET	5979	MSKCC	GRCh37	10	43620429	43620429	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	148	516	0	ENST00000355710.3:c.3038G>C	p.Arg1013Thr	p.R1013T	ENST00000355710	NM_020975.4	1013	aGa/aCa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523318	176523318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	193	637	1	ENST00000292408.4:c.1975G>A	p.Glu659Lys	p.E659K	ENST00000292408	NM_213647.1	659	Gag/Aag																																																																															
CDC73	79577	MSKCC	GRCh37	1	193091415	193091415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	156	458	0	ENST00000367435.3:c.85G>A	p.Glu29Lys	p.E29K	ENST00000367435	NM_024529.4	29	Gag/Aag																																																																															
JUN	3725	MSKCC	GRCh37	1	59248409	59248409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	112	401	1	ENST00000371222.2:c.334G>A	p.Glu112Lys	p.E112K	ENST00000371222	NM_002228.3	112	Gag/Aag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8524966	8524966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	123	406	0	ENST00000356435.5:c.638C>T	p.Ala213Val	p.A213V	ENST00000356435		213	gCg/gTg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265533	152265533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	177	460	0	ENST00000206249.3:c.986C>T	p.Ser329Phe	p.S329F	ENST00000206249	NM_000125.3	329	tCc/tTc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26828845	26828845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	146	467	0	ENST00000381527.3:c.67G>A	p.Glu23Lys	p.E23K	ENST00000381527	NM_001260.1	23	Gag/Aag																																																																															
DIS3	22894	MSKCC	GRCh37	13	73335903	73335903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	126	465	0	ENST00000377767.4:c.2392G>A	p.Asp798Asn	p.D798N	ENST00000377767	NM_014953.3	798	Gac/Aac																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482835	67482835	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	111	576	0	ENST00000327367.4:c.1239G>C	p.Gln413His	p.Q413H	ENST00000327367	NM_005902.3	413	caG/caC																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641274	23641274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	168	612	0	ENST00000261584.4:c.2201C>T	p.Thr734Ile	p.T734I	ENST00000261584	NM_024675.3	734	aCt/aTt																																																																															
CDH1	999	MSKCC	GRCh37	16	68772202	68772203	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	142	579	0	ENST00000261769.5:c.52dup	p.Ser18PhefsTer16	p.S18Ffs*16	ENST00000261769	NM_004360.3	17	-/T																																																																															
NF1	4763	MSKCC	GRCh37	17	29663415	29663415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	188	510	0	ENST00000358273.4:c.6071G>A	p.Gly2024Glu	p.G2024E	ENST00000358273	NM_001042492.2	2024	gGa/gAa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17937667	17937667	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	143	577	1	ENST00000458235.1:c.3260C>A	p.Ser1087Ter	p.S1087*	ENST00000458235	NM_000215.3	1087	tCa/tAa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413689	138413689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	190	481	0	ENST00000289153.2:c.1831G>T	p.Asp611Tyr	p.D611Y	ENST00000289153	NM_006219.2	611	Gat/Tat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178948096	178948096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	112	280	0	ENST00000263967.3:c.2868G>C	p.Leu956Phe	p.L956F	ENST00000263967	NM_006218.2	956	ttG/ttC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510060	187510060	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	160	453	0	ENST00000441802.2:c.13453A>C	p.Asn4485His	p.N4485H	ENST00000441802	NM_005245.3	4485	Aac/Cac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879019	151879019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	178	509	0	ENST00000262189.6:c.5926G>T	p.Asp1976Tyr	p.D1976Y	ENST00000262189	NM_170606.2	1976	Gat/Tat																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23539034	23539034	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	131	479	0	ENST00000380871.4:c.405G>C	p.Gln135His	p.Q135H	ENST00000380871	NM_006167.3	135	caG/caC																																																																															
NBN	4683	MSKCC	GRCh37	8	90965642	90965642	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	116	338	0	ENST00000265433.3:c.1675G>C	p.Glu559Gln	p.E559Q	ENST00000265433	NM_002485.4	559	Gaa/Caa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117869542	117869542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	90	438	0	ENST00000297338.2:c.652G>A	p.Asp218Asn	p.D218N	ENST00000297338	NM_006265.2	218	Gat/Aat																																																																															
JAK2	3717	MSKCC	GRCh37	9	5077542	5077542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	110	405	0	ENST00000381652.3:c.1954G>C	p.Glu652Gln	p.E652Q	ENST00000381652	NM_004972.3	652	Gaa/Caa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226184	53226184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	40	636	0	ENST00000375401.3:c.2665G>A	p.Glu889Lys	p.E889K	ENST00000375401	NM_004187.3	889	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0026890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	34	283	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0026890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	158	583	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761459	59761460	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	82	505	0	ENST00000259008.2:c.2947dup	p.Ile983AsnfsTer19	p.I983Nfs*19	ENST00000259008	NM_032043.2	983	att/aAtt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120373	70120374	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0026890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	139	1005	0	ENST00000245479.2:c.1376_1377dupGC	p.Thr460AlafsTer11	p.T460Afs*11	ENST00000245479	NM_000346.3	459	ggc/gGCgc																																																																															
APC	324	MSKCC	GRCh37	5	112175074	112175074	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	42	243	0	ENST00000257430.4:c.3784del	p.Tyr1262IlefsTer3	p.Y1262Ifs*3	ENST00000257430	NM_000038.5	1261	acT/ac																																																																															
ATM	472	MSKCC	GRCh37	11	108121508	108121508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	127	535	0	ENST00000278616.4:c.1316T>C	p.Leu439Pro	p.L439P	ENST00000278616	NM_000051.3	439	cTa/cCa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730778	40730778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	98	571	0	ENST00000373198.4:c.3757G>A	p.Ala1253Thr	p.A1253T	ENST00000373198	NM_133170.3	1253	Gca/Aca																																																																															
IRF4	3662	MSKCC	GRCh37	6	393198	393198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	100	493	1	ENST00000380956.4:c.46G>A	p.Ala16Thr	p.A16T	ENST00000380956	NM_001195286.1	16	Gcg/Acg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	146	509	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0026721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	209	403	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0026721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	326	676	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0026721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	27	526	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730876	40730876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	333	752	0	ENST00000373198.4:c.3659G>A	p.Arg1220Gln	p.R1220Q	ENST00000373198	NM_133170.3	1220	cGg/cAg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135409	30135409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	96	424	0	ENST00000331968.5:c.409G>A	p.Ala137Thr	p.A137T	ENST00000331968	NM_002742.2	137	Gcc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057702	27057702	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0026721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	220	806	0	ENST00000324856.7:c.1410T>G	p.Tyr470Ter	p.Y470*	ENST00000324856	NM_006015.4	470	taT/taG																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154290	2154290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	187	876	0	ENST00000434045.2:c.638C>T	p.Pro213Leu	p.P213L	ENST00000434045	NM_001127598.1	213	cCc/cTc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741897	17741897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	21	121	0	ENST00000250003.3:c.568G>A	p.Gly190Ser	p.G190S	ENST00000250003	NM_002478.4	190	Ggc/Agc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741924	17741924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	98	235	0	ENST00000250003.3:c.595G>A	p.Ala199Thr	p.A199T	ENST00000250003	NM_002478.4	199	Gcg/Acg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446455	49446455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	224	461	1	ENST00000301067.7:c.1150G>A	p.Glu384Lys	p.E384K	ENST00000301067	NM_003482.3	384	Gag/Aag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63545728	63545731	+	protein_altering_variant	In_Frame_Ins	INS	TAGC	TAGC	CTATGTG			P-0026721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	338	636	0	ENST00000307078.5:c.863_866delinsCACATAG	p.Gly288_Tyr289delinsAlaHisSer	p.G288_Y289delinsAHS	ENST00000307078	NM_004655.3	288	gGCTAt/gCACATAGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0026856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	450	645	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609834	81609834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	197	333	1	ENST00000298171.2:c.1432C>T	p.His478Tyr	p.H478Y	ENST00000298171	NM_000369.2	478	Cac/Tac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170759	11170759	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	272	736	0	ENST00000344626.4:c.4807G>C	p.Glu1603Gln	p.E1603Q	ENST00000344626	NM_003072.3	1603	Gag/Cag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468480	89468480	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	98	421	0	ENST00000336596.2:c.2014A>C	p.Ser672Arg	p.S672R	ENST00000336596	NM_005233.5	672	Agc/Cgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878029	151878029	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	121	358	0	ENST00000262189.6:c.6916C>G	p.Pro2306Ala	p.P2306A	ENST00000262189	NM_170606.2	2306	Cca/Gca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884882	151884882	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	197	469	0	ENST00000262189.6:c.4711C>G	p.His1571Asp	p.H1571D	ENST00000262189	NM_170606.2	1571	Cat/Gat																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0026857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	158	631	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266112	41266112	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	111	351	0	ENST00000349496.5:c.109T>G	p.Ser37Ala	p.S37A	ENST00000349496	NM_001904.3	37	Tct/Gct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0026858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	613	484	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	266	396	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120041	70120042	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	63	76	0	ENST00000245479.2:c.1044dup	p.Pro349AlafsTer229	p.P349Afs*229	ENST00000245479	NM_000346.3	348	cag/caGg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061211	38061240	+	inframe_deletion	In_Frame_Del	DEL	AGTAGCAGCCGTTCTCGAACATGTTGCCGG	AGTAGCAGCCGTTCTCGAACATGTTGCCGG	-			P-0026861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	244	516	0	ENST00000250448.2:c.749_778del	p.Ser250_Tyr259del	p.S250_Y259del	ENST00000250448	NM_004496.3	250	tCCGGCAACATGTTCGAGAACGGCTGCTACTtg/ttg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914670	32914670	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	69	585	1	ENST00000380152.3:c.6178A>G	p.Thr2060Ala	p.T2060A	ENST00000380152		2060	Aca/Gca																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589560	67589583	+	inframe_deletion	In_Frame_Del	DEL	TATTGAAGCTGTAGGGAAAAAATT	TATTGAAGCTGTAGGGAAAAAATT	-			P-0026861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	87	345	0	ENST00000274335.5:c.1323_1346del	p.Asn441_Leu449delinsLys	p.N441_L449delinsK	ENST00000274335		441	aaTATTGAAGCTGTAGGGAAAAAATTa/aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175883	112175884	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	171	321	0	ENST00000257430.4:c.4593dup	p.Asp1532Ter	p.D1532*	ENST00000257430	NM_000038.5	1531	aat/aaTt																																																																															
RAD21	5885	MSKCC	GRCh37	8	117866612	117866614	+	inframe_deletion	In_Frame_Del	DEL	AAT	AAT	-			P-0026861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	300	591	0	ENST00000297338.2:c.1031_1033del	p.Tyr344del	p.Y344del	ENST00000297338	NM_006265.2	344	tATTca/tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577519	7577527	+	inframe_deletion	In_Frame_Del	DEL	GATGGTGAG	GATGGTGAG	-			P-0026548-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			754	185	627	0	ENST00000269305.4:c.754_762del	p.Leu252_Ile254del	p.L252_I254del	ENST00000269305	NM_001126112.2	252	CTCACCATC/-																																																																															
SUFU	51684	MSKCC	GRCh37	10	104389902	104389902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026548-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			686	78	479	0	ENST00000369902.3:c.1445C>T	p.Pro482Leu	p.P482L	ENST00000369902	NM_016169.3	482	cCg/cTg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683191	88683191	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0026548-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			189	44	177	0	ENST00000372037.3:c.1401C>G	p.Tyr467Ter	p.Y467*	ENST00000372037	NM_004329.2	467	taC/taG																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0026548-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			683	158	590	0	ENST00000407977.2:c.348_349dup	p.Arg117ProfsTer42	p.R117Pfs*42	ENST00000407977		117	cgc/cCCgc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2191010	2191010	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0026548-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	103	355	0	ENST00000398665.3:c.265-1G>A		p.X89_splice	ENST00000398665	NM_032482.2	89																																																																																
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0026557-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			117	140	602	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0026557-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			114	254	482	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0026557-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			242	73	477	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
IL10	3586	MSKCC	GRCh37	1	206943197	206943197	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026557-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			399	51	430	0	ENST00000423557.1:c.421C>A	p.Gln141Lys	p.Q141K	ENST00000423557	NM_000572.2	141	Cag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	200	409	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0026867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	404	664	1	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0026867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	113	352	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
IRF4	3662	MSKCC	GRCh37	6	397187	397187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	145	385	1	ENST00000380956.4:c.572C>T	p.Pro191Leu	p.P191L	ENST00000380956	NM_001195286.1	191	cCg/cTg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190718801	190718802	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0026867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	63	256	0	ENST00000441310.2:c.961_962del	p.Asn321Ter	p.N321*	ENST00000441310	NM_000534.4	320	cAA/c																																																																															
SDHB	6390	MSKCC	GRCh37	1	17349132	17349132	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs146800605		P-0026871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	647	546	0	ENST00000375499.3:c.736A>G	p.Ile246Val	p.I246V	ENST00000375499	NM_003000.2	246	Atc/Gtc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138058	64138058	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	495	642	0	ENST00000334205.4:c.1981A>C	p.Lys661Gln	p.K661Q	ENST00000334205	NM_003942.2	661	Aag/Cag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49418601	49418601	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	53	451	2	ENST00000301067.7:c.15913G>T	p.Ala5305Ser	p.A5305S	ENST00000301067	NM_003482.3	5305	Gct/Tct																																																																															
FLT1	2321	MSKCC	GRCh37	13	28896455	28896455	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	72	549	0	ENST00000282397.4:c.2995C>G	p.Leu999Val	p.L999V	ENST00000282397	NM_002019.4	999	Ctg/Gtg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911683	32911683	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	359	446	1	ENST00000380152.3:c.3191C>A	p.Ser1064Ter	p.S1064*	ENST00000380152		1064	tCa/tAa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061228	38061228	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	444	595	2	ENST00000250448.2:c.761del	p.Phe254SerfsTer67	p.F254Sfs*67	ENST00000250448	NM_004496.3	254	tTc/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	435	548	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627555	37627591	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTGTTAAAGATTTGAAAGCACAGGGAACAAGAGAC	TCTTGTTAAAGATTTGAAAGCACAGGGAACAAGAGAC	-			P-0026871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	189	613	0	ENST00000447079.4:c.1473_1509del	p.Val492AsnfsTer3	p.V492Nfs*3	ENST00000447079	NM_015083.1	490	caTCTTGTTAAAGATTTGAAAGCACAGGGAACAAGAGAC/ca																																																																															
TCF3	6929	MSKCC	GRCh37	19	1650217	1650217	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	87	672	0	ENST00000344749.5:c.31G>C	p.Gly11Arg	p.G11R	ENST00000344749	NM_001136139.2	11	Ggc/Cgc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026539	48026539	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	321	449	0	ENST00000234420.5:c.1417C>G	p.Leu473Val	p.L473V	ENST00000234420	NM_000179.2	473	Ctg/Gtg																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29207468	29207468	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	302	411	0	ENST00000240100.2:c.328G>C	p.Glu110Gln	p.E110Q	ENST00000240100	NM_001394.6	110	Gag/Cag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0026873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	48	717	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0026873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	47	636	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
XIAP	331	MSKCC	GRCh37	X	123041018	123041018	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs61752968		P-0026873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	19	139	0	ENST00000355640.3:c.1481T>A	p.Ile494Asn	p.I494N	ENST00000355640		494	aTt/aAt																																																																															
RARA	5914	MSKCC	GRCh37	17	38487554	38487554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	143	560	0	ENST00000254066.5:c.89delC	p.Pro30LeufsTer12	p.P30Lfs*12	ENST00000254066	NM_000964.3	28	ttC/tt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	98	527	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	106	429	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	97	366	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	302	566	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296358	15296358	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	154	595	0	ENST00000263388.2:c.2084del	p.Pro695ArgfsTer165	p.P695Rfs*165	ENST00000263388	NM_000435.2	695	cCg/cg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910866	32910866	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	103	492	0	ENST00000380152.3:c.2374T>C	p.Tyr792His	p.Y792H	ENST00000380152		792	Tac/Cac																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10283797	10283797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	165	577	0	ENST00000340748.4:c.689G>A	p.Arg230His	p.R230H	ENST00000340748		230	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	102	555	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	167	576	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80646042	80646042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	70	310	0	ENST00000286548.4:c.110G>A	p.Arg37His	p.R37H	ENST00000286548	NM_002072.3	37	cGc/cAc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	150	690	3	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	144	592	4	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	96	435	3	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	159	648	5	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	130	332	3	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																															
SRC	6714	MSKCC	GRCh37	20	36012656	36012656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	76	242	0	ENST00000358208.4:c.100G>A	p.Ala34Thr	p.A34T	ENST00000358208		34	Gcc/Acc																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020769	37020769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	140	545	2	ENST00000358127.4:c.76del	p.Val26PhefsTer3	p.V26Ffs*3	ENST00000358127	NM_001280556.1	26	Gtt/tt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619309	37619309	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	106	430	0	ENST00000447079.4:c.985C>T	p.Arg329Ter	p.R329*	ENST00000447079	NM_015083.1	329	Cga/Tga																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612818	228612818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	148	527	0	ENST00000366696.1:c.209G>A	p.Arg70Gln	p.R70Q	ENST00000366696	NM_003493.2	70	cGg/cAg																																																																															
FYN	2534	MSKCC	GRCh37	6	111983042	111983042	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	181	585	3	ENST00000368678.4:c.1505del	p.Lys502ArgfsTer53	p.K502Rfs*53	ENST00000368678		502	aAg/ag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533517	63533517	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	151	535	4	ENST00000307078.5:c.1637del	p.Gly546AlafsTer143	p.G546Afs*143	ENST00000307078	NM_004655.3	546	gGc/gc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383228	42383228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	180	584	1	ENST00000221972.3:c.248C>T	p.Pro83Leu	p.P83L	ENST00000221972	NM_021601.3	83	cCg/cTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538941	187538941	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	129	463	0	ENST00000441802.2:c.8799delA	p.Gly2934ValfsTer3	p.G2934Vfs*3	ENST00000441802	NM_005245.3	2933	caA/ca																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71161712	71161712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	114	397	0	ENST00000318789.4:c.257G>A	p.Arg86Lys	p.R86K	ENST00000318789	NM_032682.5	86	aGg/aAg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	125	576	5	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	291	659	10	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324892	31324892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs765875917		P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	35	238	0	ENST00000412585.2:c.44del	p.Ala15GlyfsTer5	p.A15Gfs*5	ENST00000412585	NM_005514.6	15	gCg/gg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	120	521	6	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204992	128204992	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	120	562	0	ENST00000341105.2:c.449del	p.Gly150GlufsTer68	p.G150Efs*68	ENST00000341105	NM_032638.4	150	gGa/ga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214871	36214871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	62	677	0	ENST00000222270.7:c.3302del	p.Pro1101LeufsTer81	p.P1101Lfs*81	ENST00000222270	NM_014727.1	1099	ggC/gg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	163	584	2	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39214651	39214651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	120	619	0	ENST00000402219.2:c.3473G>A	p.Arg1158Gln	p.R1158Q	ENST00000402219	NM_005633.3	1158	cGa/cAa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	143	526	0	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49427282	49427282	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	120	428	0	ENST00000301067.7:c.11206C>T	p.Gln3736Ter	p.Q3736*	ENST00000301067	NM_003482.3	3736	Cag/Tag																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792249	33792249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	143	477	0	ENST00000498907.2:c.1072G>A	p.Ala358Thr	p.A358T	ENST00000498907	NM_004364.3	358	Gcg/Acg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535355	66535355	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	158	594	1	ENST00000273854.3:c.106C>T	p.Arg36Ter	p.R36*	ENST00000273854	NM_004439.5	36	Cga/Tga																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164464	36164464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	77	325	0	ENST00000300305.3:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000300305		471	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056328	27056328	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	125	385	0	ENST00000324856.7:c.1324A>G	p.Met442Val	p.M442V	ENST00000324856	NM_006015.4	442	Atg/Gtg																																																																															
MYCL1	4610	MSKCC	GRCh37	1	40363211	40363211	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	38	473	0	ENST00000397332.2:c.1018A>G	p.Thr340Ala	p.T340A	ENST00000397332	NM_001033082.2	340	Acc/Gcc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206658408	206658408	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	121	506	0	ENST00000367120.3:c.1502C>T	p.Thr501Ile	p.T501I	ENST00000367120	NM_014002.3	501	aCt/aTt																																																																															
CCND1	595	MSKCC	GRCh37	11	69457989	69457989	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1131439		P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	92	465	0	ENST00000227507.2:c.389A>G	p.Asn130Ser	p.N130S	ENST00000227507	NM_053056.2	130	aAc/aGc																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518521	69518521	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	139	526	0	ENST00000294312.3:c.124A>G	p.Ile42Val	p.I42V	ENST00000294312	NM_005117.2	42	Atc/Gtc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941276	71941276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	185	604	1	ENST00000298229.2:c.1051G>A	p.Asp351Asn	p.D351N	ENST00000298229	NM_001567.3	351	Gac/Aac																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943302	71943302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	148	619	0	ENST00000298229.2:c.1634G>A	p.Gly545Asp	p.G545D	ENST00000298229	NM_001567.3	545	gGc/gAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435130	18435130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	88	435	0	ENST00000266497.5:c.115G>T	p.Gly39Cys	p.G39C	ENST00000266497		39	Ggt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428388	49428388	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	199	679	0	ENST00000301067.7:c.10417C>A	p.His3473Asn	p.H3473N	ENST00000301067	NM_003482.3	3473	Cat/Aat																																																																															
FLT3	2322	MSKCC	GRCh37	13	28599019	28599019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	118	538	0	ENST00000241453.7:c.2269G>T	p.Gly757Trp	p.G757W	ENST00000241453	NM_004119.2	757	Ggg/Tgg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457675	67457675	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	146	653	0	ENST00000327367.4:c.488del	p.Asn163ThrfsTer23	p.N163Tfs*23	ENST00000327367	NM_005902.3	162	gAa/ga																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434767	99434767	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	147	521	0	ENST00000268035.6:c.854T>A	p.Ile285Asn	p.I285N	ENST00000268035	NM_000875.3	285	aTc/aAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900297	3900297	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	158	526	1	ENST00000262367.5:c.798+1G>A		p.X266_splice	ENST00000262367	NM_004380.2	266																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	10273980	10273980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	189	666	3	ENST00000330684.3:c.289G>A	p.Gly97Ser	p.G97S	ENST00000330684	NM_001134407.1	97	Ggc/Agc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346882	89346882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	66	257	0	ENST00000301030.4:c.6068C>T	p.Ala2023Val	p.A2023V	ENST00000301030	NM_001256183.1	2023	gCc/gTc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348998	89348998	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	195	648	0	ENST00000301030.4:c.3952A>G	p.Thr1318Ala	p.T1318A	ENST00000301030	NM_001256183.1	1318	Act/Gct																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16024389	16024389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	111	306	0	ENST00000268712.3:c.1829C>T	p.Pro610Leu	p.P610L	ENST00000268712	NM_006311.3	610	cCt/cTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29554308	29554308	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	162	634	2	ENST00000358273.4:c.2324A>G	p.Glu775Gly	p.E775G	ENST00000358273	NM_001042492.2	775	gAg/gGg																																																																															
NF1	4763	MSKCC	GRCh37	17	29667608	29667608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	150	619	0	ENST00000358273.4:c.7007C>T	p.Ala2336Val	p.A2336V	ENST00000358273	NM_001042492.2	2336	gCa/gTa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37646889	37646889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	194	679	0	ENST00000447079.4:c.2011C>T	p.Leu671Phe	p.L671F	ENST00000447079	NM_015083.1	671	Ctc/Ttc																																																																															
RARA	5914	MSKCC	GRCh37	17	38511646	38511646	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	134	561	0	ENST00000254066.5:c.1144A>G	p.Thr382Ala	p.T382A	ENST00000254066	NM_000964.3	382	Act/Gct																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244967	41244967	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	155	642	0	ENST00000357654.3:c.2581T>C	p.Phe861Leu	p.F861L	ENST00000357654	NM_007294.3	861	Ttc/Ctc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63526140	63526140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	176	641	2	ENST00000307078.5:c.2486C>T	p.Pro829Leu	p.P829L	ENST00000307078	NM_004655.3	829	cCg/cTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145716	11145718	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	154	681	7	ENST00000344626.4:c.4090_4092del	p.Glu1364del	p.E1364del	ENST00000344626	NM_003072.3	1360	GAG/-																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375316	15375316	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200264318		P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	179	602	0	ENST00000263377.2:c.1111G>A	p.Ala371Thr	p.A371T	ENST00000263377	NM_058243.2	371	Gcc/Acc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273229	18273229	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	200	588	0	ENST00000222254.8:c.1022A>G	p.Asn341Ser	p.N341S	ENST00000222254	NM_005027.3	341	aAc/aGc																																																																															
AKT2	208	MSKCC	GRCh37	19	40746010	40746010	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	146	608	0	ENST00000392038.2:c.581T>C	p.Val194Ala	p.V194A	ENST00000392038	NM_001626.4	194	gTc/gCc																																																																															
CASP8	841	MSKCC	GRCh37	2	202136301	202136301	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	135	647	0	ENST00000358485.4:c.545T>G	p.Leu182Arg	p.L182R	ENST00000358485	NM_001080125.1	182	cTt/cGt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161751	47161751	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	69	318	0	ENST00000409792.3:c.4375C>T	p.Arg1459Ter	p.R1459*	ENST00000409792	NM_014159.6	1459	Cga/Tga																																																																															
MITF	4286	MSKCC	GRCh37	3	69986988	69986988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	143	502	0	ENST00000352241.4:c.370G>A	p.Glu124Lys	p.E124K	ENST00000352241	NM_198159.2	124	Gaa/Aaa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413703	138413704	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	121	436	0	ENST00000289153.2:c.1816dup	p.Ala606GlyfsTer27	p.A606Gfs*27	ENST00000289153	NM_006219.2	606	gcc/gGcc																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502228	186502230	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	77	336	0	ENST00000323963.5:c.40_42del	p.Gly14del	p.G14del	ENST00000323963		13	GGC/-																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803231	1803231	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	149	620	0	ENST00000260795.2:c.583T>C	p.Phe195Leu	p.F195L	ENST00000260795		195	Ttc/Ctc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807485	1807485	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	138	583	0	ENST00000260795.2:c.1654T>C	p.Tyr552His	p.Y552H	ENST00000260795		552	Tac/Cac																																																																															
KDR	3791	MSKCC	GRCh37	4	55948190	55948190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	133	524	0	ENST00000263923.4:c.3781G>A	p.Gly1261Ser	p.G1261S	ENST00000263923	NM_002253.2	1261	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112178449	112178449	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	85	484	0	ENST00000257430.4:c.7158G>T	p.Lys2386Asn	p.K2386N	ENST00000257430	NM_000038.5	2386	aaG/aaT																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323989	31323989	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	82	175	0	ENST00000412585.2:c.574C>A	p.Leu192Ile	p.L192I	ENST00000412585	NM_005514.6	192	Ctc/Atc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816451	32816451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	156	708	0	ENST00000354258.4:c.1724G>A	p.Arg575His	p.R575H	ENST00000354258	NM_000593.5	575	cGc/cAc																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793888	89793888	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	121	364	0	ENST00000336032.3:c.961del	p.Thr321ArgfsTer16	p.T321Rfs*16	ENST00000336032	NM_006813.2	319	ttA/tt																																																																															
FYN	2534	MSKCC	GRCh37	6	111983151	111983151	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	96	304	0	ENST00000368678.4:c.1397-1G>T		p.X466_splice	ENST00000368678		466																																																																																
TNFAIP3	7128	MSKCC	GRCh37	6	138192429	138192429	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199876928		P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	99	341	0	ENST00000237289.4:c.65G>A	p.Arg22Gln	p.R22Q	ENST00000237289	NM_001270507.1	22	cGg/cAg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099886	157099886	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	119	587	3	ENST00000346085.5:c.826del	p.Ala276ProfsTer93	p.A276Pfs*93	ENST00000346085	NM_020732.3	275	Ggg/gg																																																																															
HGF	3082	MSKCC	GRCh37	7	81392054	81392054	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	93	451	0	ENST00000222390.5:c.223A>G	p.Thr75Ala	p.T75A	ENST00000222390	NM_000601.4	75	Act/Gct																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877850	151877853	+	frameshift_variant	Frame_Shift_Del	DEL	AGTT	AGTT	-			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	87	378	0	ENST00000262189.6:c.7092_7095del	p.Thr2365IlefsTer6	p.T2365Ifs*6	ENST00000262189	NM_170606.2	2364	gtAACT/gt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68942745	68942745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	107	434	0	ENST00000288368.4:c.557G>A	p.Arg186Gln	p.R186Q	ENST00000288368	NM_024870.2	186	cGg/cAg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117859930	117859930	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	62	264	2	ENST00000297338.2:c.1705C>T	p.Arg569Cys	p.R569C	ENST00000297338	NM_006265.2	569	Cgt/Tgt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5089718	5089718	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	98	337	0	ENST00000381652.3:c.2616G>T	p.Gln872His	p.Q872H	ENST00000381652	NM_004972.3	872	caG/caT																																																																															
JAK2	3717	MSKCC	GRCh37	9	5123120	5123120	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	80	438	0	ENST00000381652.3:c.3176C>T	p.Ala1059Val	p.A1059V	ENST00000381652	NM_004972.3	1059	gCg/gTg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570245	87570245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	98	366	1	ENST00000277120.3:c.1985C>T	p.Thr662Met	p.T662M	ENST00000277120		662	aCg/aTg																																																																															
SYK	6850	MSKCC	GRCh37	9	93629479	93629479	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	83	354	0	ENST00000375746.1:c.913A>G	p.Lys305Glu	p.K305E	ENST00000375746	NM_001174167.1	305	Aag/Gag																																																																															
SYK	6850	MSKCC	GRCh37	9	93657853	93657853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	146	479	0	ENST00000375746.1:c.1879C>T	p.Arg627Cys	p.R627C	ENST00000375746	NM_001174167.1	627	Cgc/Tgc																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128419964	128419964	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	134	666	0	ENST00000265960.3:c.464A>G	p.Asn155Ser	p.N155S	ENST00000265960	NM_001006617.1	155	aAc/aGc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412242	139412242	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	125	643	0	ENST00000277541.6:c.1403T>C	p.Leu468Pro	p.L468P	ENST00000277541	NM_017617.3	468	cTg/cCg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931787	39931788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	172	267	0	ENST00000378444.4:c.2811dup	p.Thr938HisfsTer8	p.T938Hfs*8	ENST00000378444	NM_001123385.1	937	-/C																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427508	49427509	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	A			P-0026875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	134	533	1	ENST00000301067.7:c.10979_10980delinsT	p.Gly3660ValfsTer89	p.G3660Vfs*89	ENST00000301067	NM_003482.3	3660	gGG/gT																																																																															
MDM4	4194	MSKCC	GRCh37	1	204511930	204511930	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2328	452	266	0	ENST00000367182.3:c.530A>T	p.Asn177Ile	p.N177I	ENST00000367182	NM_001278516.1	177	aAt/aTt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115869	8115873	+	frameshift_variant	Frame_Shift_Del	DEL	CATCT	CATCT	-			P-0026876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	202	608	0	ENST00000346208.3:c.1216_1220del	p.Ile406AlafsTer99	p.I406Afs*99	ENST00000346208		405	caCATCTcg/cacg																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50492748	50492765	+	inframe_deletion	In_Frame_Del	DEL	GAATTAGAGCAAGCCCTG	GAATTAGAGCAAGCCCTG	-			P-0026876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	226	520	0	ENST00000394963.4:c.1514_1531del	p.Glu505_Leu510del	p.E505_L510del	ENST00000394963	NM_003076.4	505	GAATTAGAGCAAGCCCTG/-																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089777	27089777	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0026877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	214	488	0	ENST00000324856.7:c.2732+1G>T		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																																
TP53	7157	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs530941076		P-0026877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	340	718	0	ENST00000269305.4:c.658T>C	p.Tyr220His	p.Y220H	ENST00000269305	NM_001126112.2	220	Tat/Cat																																																																															
KDR	3791	MSKCC	GRCh37	4	55958788	55958788	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780764266		P-0026877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	205	571	0	ENST00000263923.4:c.3065G>A	p.Arg1022Gln	p.R1022Q	ENST00000263923	NM_002253.2	1022	cGa/cAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710633	114710634	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	291	529	0	ENST00000543371.1:c.118_119insT	p.Asp40ValfsTer4	p.D40Vfs*4	ENST00000543371	NM_001198531.1	40	gat/gTat																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118948	70118949	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0026877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	336	689	0	ENST00000245479.2:c.521_522dup	p.Gln175ThrfsTer9	p.Q175Tfs*9	ENST00000245479	NM_000346.3	174	tac/tACac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593505	48593505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	189	292	0	ENST00000342988.3:c.1256G>A	p.Gly419Glu	p.G419E	ENST00000342988	NM_005359.5	419	gGg/gAg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37089008	37089008	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0026877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	133	266	1	ENST00000231790.2:c.1732-2A>T		p.X578_splice	ENST00000231790	NM_000249.3	578																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66233081	66233081	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	186	357	0	ENST00000273854.3:c.1918G>T	p.Gly640Trp	p.G640W	ENST00000273854	NM_004439.5	640	Ggg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112174223	112174223	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	126	491	1	ENST00000257430.4:c.2932C>T	p.Gln978Ter	p.Q978*	ENST00000257430	NM_000038.5	978	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175220	112175221	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0026877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	58	311	0	ENST00000257430.4:c.3929_3930insTT	p.Lys1310AsnfsTer2	p.K1310Nfs*2	ENST00000257430	NM_000038.5	1310	aag/aaTTg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70982031	70982031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	135	690	0	ENST00000276594.2:c.65G>A	p.Ser22Asn	p.S22N	ENST00000276594	NM_024504.3	22	aGc/aAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009460-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			860	78	597	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0026708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	416	562	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075152	16075152	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	132	441	0	ENST00000268712.3:c.400C>G	p.Pro134Ala	p.P134A	ENST00000268712	NM_006311.3	134	Cca/Gca																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794882	242794882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	317	702	0	ENST00000334409.5:c.327C>A	p.Ser109Arg	p.S109R	ENST00000334409	NM_005018.2	109	agC/agA																																																																															
STK11	6794	MSKCC	GRCh37	19	1207037	1207037	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	328	680	0	ENST00000326873.7:c.127del	p.Ala43ProfsTer8	p.A43Pfs*8	ENST00000326873	NM_000455.4	42	cGg/cg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602473	10602473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	302	565	1	ENST00000171111.5:c.1105G>T	p.Val369Leu	p.V369L	ENST00000171111	NM_203500.1	369	Gtg/Ttg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36945080	36945080	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	184	667	0	ENST00000361632.4:c.18C>A	p.Asn6Lys	p.N6K	ENST00000361632		6	aaC/aaA																																																																															
CBL	867	MSKCC	GRCh37	11	119169139	119169139	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	165	588	2	ENST00000264033.4:c.2323G>T	p.Asp775Tyr	p.D775Y	ENST00000264033	NM_005188.3	775	Gat/Tat																																																																															
FLCN	201163	MSKCC	GRCh37	17	17122482	17122482	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	137	671	0	ENST00000285071.4:c.913G>C	p.Glu305Gln	p.E305Q	ENST00000285071	NM_144997.5	305	Gaa/Caa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1920012	1920012	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	170	652	0	ENST00000382891.5:c.1072C>G	p.Gln358Glu	p.Q358E	ENST00000382891	NM_133335.3	358	Caa/Gaa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637232	176637232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1216	187	675	2	ENST00000439151.2:c.1832G>A	p.Arg611Gln	p.R611Q	ENST00000439151	NM_022455.4	611	cGa/cAa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	109	560	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646198	3646198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	181	618	0	ENST00000294008.3:c.1880C>T	p.Pro627Leu	p.P627L	ENST00000294008	NM_032444.2	627	cCg/cTg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371900	55371900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	45	272	0	ENST00000297316.4:c.590C>T	p.Pro197Leu	p.P197L	ENST00000297316	NM_022454.3	197	cCg/cTg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061223	38061228	+	inframe_deletion	In_Frame_Del	DEL	TCTCGA	TCTCGA	-			P-0026716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	231	419	1	ENST00000250448.2:c.761_766del	p.Phe254_Asn256delinsTyr	p.F254_N256delinsY	ENST00000250448	NM_004496.3	254	tTCGAGAac/tac																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870969	12870969	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	212	421	0	ENST00000228872.4:c.197del	p.Asn66IlefsTer5	p.N66Ifs*5	ENST00000228872	NM_004064.3	66	Aat/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	110	487	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0026717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	75	586	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106151	27106151	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	67	511	0	ENST00000324856.7:c.5763del	p.Leu1922Ter	p.L1922*	ENST00000324856	NM_006015.4	1921	aCc/ac																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749260	43749260	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	27	563	0	ENST00000382044.4:c.1546G>T	p.Asp516Tyr	p.D516Y	ENST00000382044	NM_001141980.1	516	Gat/Tat																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0026765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	283	403	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551361	150551361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	372	662	0	ENST00000369026.2:c.646G>T	p.Val216Phe	p.V216F	ENST00000369026	NM_021960.4	216	Gtt/Ttt																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811653	102811653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	259	463	0	ENST00000307046.8:c.531G>T	p.Glu177Asp	p.E177D	ENST00000307046	NM_001111285.1	177	gaG/gaT																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30315369	30315369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	276	359	0	ENST00000322652.5:c.1054G>A	p.Gly352Arg	p.G352R	ENST00000322652	NM_015355.2	352	Gga/Aga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437613	56437614	+	splice_acceptor_variant	Splice_Site	DNP	CT	CT	AC			P-0026765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	243	316	2	ENST00000407977.2:c.850-2_850-1delinsGT		p.X284_splice	ENST00000407977		284																																																																																
AXL	558	MSKCC	GRCh37	19	41727089	41727089	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	263	580	1	ENST00000301178.4:c.347A>T	p.Gln116Leu	p.Q116L	ENST00000301178	NM_021913.4	116	cAg/cTg																																																																															
RRAS	6237	MSKCC	GRCh37	19	50138844	50138844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	413	616	1	ENST00000246792.3:c.646G>A	p.Val216Ile	p.V216I	ENST00000246792	NM_006270.3	216	Gtc/Atc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165290	32165290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	278	617	0	ENST00000375023.3:c.4838C>T	p.Pro1613Leu	p.P1613L	ENST00000375023	NM_004557.3	1613	cCt/cTt																																																																															
AR	367	MSKCC	GRCh37	X	66766334	66766334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	76	151	0	ENST00000374690.3:c.1346C>T	p.Pro449Leu	p.P449L	ENST00000374690	NM_000044.3	449	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577049	7577051	+	frameshift_variant	Frame_Shift_Del	DEL	GGT	GGT	A			P-0026765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	327	511	0	ENST00000269305.4:c.887_889delinsT	p.His296LeufsTer9	p.H296Lfs*9	ENST00000269305	NM_001126112.2	296	cACCac/cTac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0026766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	383	314	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177874	56177875	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0026766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	241	305	0	ENST00000399503.3:c.2849_2850delAG	p.Glu950AlafsTer53	p.E950Afs*53	ENST00000399503	NM_005921.1	949	acAGag/acag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180586	56180588	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0026766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	177	293	0	ENST00000399503.3:c.3918_3920delCAT	p.Ile1307del	p.I1307del	ENST00000399503	NM_005921.1	1305	aaCATc/aac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879598	151879598	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	160	205	0	ENST00000262189.6:c.5347C>T	p.Gln1783Ter	p.Q1783*	ENST00000262189	NM_170606.2	1783	Cag/Tag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26022344	26022344	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	177	355	0	ENST00000435504.4:c.313C>T	p.Gln105Ter	p.Q105*	ENST00000435504		105	Cag/Tag																																																																															
CDH1	999	MSKCC	GRCh37	16	68842666	68842666	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	96	536	0	ENST00000261769.5:c.602C>A	p.Pro201His	p.P201H	ENST00000261769	NM_004360.3	201	cCt/cAt																																																																															
KDR	3791	MSKCC	GRCh37	4	55955915	55955933	+	frameshift_variant	Frame_Shift_Del	DEL	TGTACACTCTGTCAAAAAT	TGTACACTCTGTCAAAAAT	-			P-0026768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	238	396	0	ENST00000263923.4:c.3229_3247del	p.Ile1077GlnfsTer19	p.I1077Qfs*19	ENST00000263923	NM_002253.2	1077	ATTTTTGACAGAGTGTACAca/ca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891116	151891116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	161	299	0	ENST00000262189.6:c.4638G>T	p.Gln1546His	p.Q1546H	ENST00000262189	NM_170606.2	1546	caG/caT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412396	63412404	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTTTACA	ATCTTTACA	TTTTTCT			P-0026768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	297	292	2	ENST00000330258.3:c.763_771delinsAGAAAAA	p.Cys255ArgfsTer22	p.C255Rfs*22	ENST00000330258	NM_152424.3	255	TGTAAAGAT/AGAAAAA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0026774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	102	297	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508629	106508629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	115	385	0	ENST00000359195.3:c.623C>T	p.Pro208Leu	p.P208L	ENST00000359195	NM_002649.2	208	cCg/cTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41574693	41574693	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	75	668	0	ENST00000263253.7:c.6978del	p.Pro2327LeufsTer26	p.P2327Lfs*26	ENST00000263253	NM_001429.3	2326	agT/ag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0026786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	104	428	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721550	176721550	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	163	434	0	ENST00000439151.2:c.7181T>C	p.Ile2394Thr	p.I2394T	ENST00000439151	NM_022455.4	2394	aTt/aCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	327	465	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G	rs587781702		P-0026842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	207	517	0	ENST00000269305.4:c.920-1G>C		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
TGFBR1	7046	MSKCC	GRCh37	9	101908787	101908787	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	141	316	0	ENST00000374994.4:c.1151T>G	p.Leu384Arg	p.L384R	ENST00000374994	NM_004612.2	384	cTc/cGc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0026853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	80	327	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0026853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	115	576	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
STK11	6794	MSKCC	GRCh37	19	1221229	1221229	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	139	652	0	ENST00000326873.7:c.752G>T	p.Gly251Val	p.G251V	ENST00000326873	NM_000455.4	251	gGt/gTt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435431	18435431	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	100	318	0	ENST00000266497.5:c.417del	p.Arg140AspfsTer5	p.R140Dfs*5	ENST00000266497		139	tCc/tc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602551	10602551	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	142	622	0	ENST00000171111.5:c.1027del	p.Glu343ArgfsTer57	p.E343Rfs*57	ENST00000171111	NM_203500.1	343	Gag/ag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713814	30713814	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	104	624	0	ENST00000359013.4:c.1214T>G	p.Leu405Arg	p.L405R	ENST00000359013	NM_001024847.2	405	cTc/cGc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682371	52682371	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	17	332	0	ENST00000394830.3:c.802C>T	p.Gln268Ter	p.Q268*	ENST00000394830	NM_018313.4	268	Caa/Taa																																																																															
BTK	695	MSKCC	GRCh37	X	100608279	100608279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	131	721	0	ENST00000308731.7:c.1811G>T	p.Ser604Ile	p.S604I	ENST00000308731	NM_000061.2	604	aGt/aTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	54	498	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143324179	143324179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	41	349	0	ENST00000262992.4:c.284G>T	p.Gly95Val	p.G95V	ENST00000262992	NM_001101669.1	95	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0026727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	112	585	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115416	115115416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1140	152	653	5	ENST00000257566.3:c.910C>T	p.Arg304Trp	p.R304W	ENST00000257566	NM_016569.3	304	Cgg/Tgg																																																																															
CDH1	999	MSKCC	GRCh37	16	68857482	68857482	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	130	606	0	ENST00000261769.5:c.2119del	p.Ile707PhefsTer15	p.I707Ffs*15	ENST00000261769	NM_004360.3	706	cAa/ca																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0026730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	323	502	1	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
CYSLTR2	57105	MSKCC	GRCh37	13	49281770	49281770	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	222	711	0	ENST00000282018.3:c.817A>G	p.Thr273Ala	p.T273A	ENST00000282018	NM_020377.2	273	Aca/Gca																																																																															
CBFB	865	MSKCC	GRCh37	16	67063372	67063372	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	172	509	0	ENST00000412916.2:c.62T>C	p.Leu21Pro	p.L21P	ENST00000412916		21	cTg/cCg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021716	31021722	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TCCGGGT	TCCGGGT	-			P-0026730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	216	531	0	ENST00000375687.4:c.1715_1719+2del		p.X572_splice	ENST00000375687	NM_015338.5	572																																																																																
XIAP	331	MSKCC	GRCh37	X	123040912	123040912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	52	507	1	ENST00000355640.3:c.1375G>A	p.Ala459Thr	p.A459T	ENST00000355640		459	Gct/Act																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242481	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAGCAA	TTAAGAGAAGCAA	C	rs397509368		P-0026732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	52	590	0	ENST00000275493.2:c.2239_2251delinsC	p.Leu747_Thr751delinsPro	p.L747_T751delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAAca/Cca																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0026734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	41	558	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715724	30715724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	29	394	0	ENST00000359013.4:c.1457G>A	p.Cys486Tyr	p.C486Y	ENST00000359013	NM_001024847.2	486	tGt/tAt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	92	339	0	ENST00000250448.2:c.798C>G	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttG																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376152	118376152	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	129	537	0	ENST00000534358.1:c.9545A>G	p.Asn3182Ser	p.N3182S	ENST00000534358	NM_005933.3	3182	aAt/aGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	218	469	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0026753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	322	641	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968259	2968259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	616	770	2	ENST00000396946.4:c.1727G>A	p.Arg576His	p.R576H	ENST00000396946	NM_032415.4	576	cGc/cAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	133	383	0	ENST00000349496.5:c.1982G>A	p.Arg661Gln	p.R661Q	ENST00000349496	NM_001904.3	661	cGa/cAa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806171	1806171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	138	738	1	ENST00000260795.2:c.1190G>A	p.Arg397His	p.R397H	ENST00000260795		397	cGc/cAc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429273	78429286	+	frameshift_variant	Frame_Shift_Del	DEL	AATCCAGTTTTCCC	AATCCAGTTTTCCC	-			P-0026753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	37	498	0	ENST00000370768.2:c.1156_1169del	p.Gly386AsnfsTer7	p.G386Nfs*7	ENST00000370768	NM_003902.3	386	GGGAAAACTGGATTa/a																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42851204	42851204	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	64	413	0	ENST00000398585.3:c.689A>T	p.Asn230Ile	p.N230I	ENST00000398585	NM_001135099.1	230	aAt/aTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266092	41266097	+	inframe_deletion	In_Frame_Del	DEL	ACCTGG	ACCTGG	-			P-0026753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	126	302	0	ENST00000349496.5:c.91_96del	p.Leu31_Asp32del	p.L31_D32del	ENST00000349496	NM_001904.3	30	tACCTGGac/tac																																																																															
PREX2	80243	MSKCC	GRCh37	8	69009278	69009278	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	114	476	0	ENST00000288368.4:c.2395G>C	p.Ala799Pro	p.A799P	ENST00000288368	NM_024870.2	799	Gcc/Ccc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261718	16261718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	54	417	0	ENST00000375759.3:c.8983C>T	p.Pro2995Ser	p.P2995S	ENST00000375759	NM_015001.2	2995	Cct/Tct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717701	89717712	+	inframe_deletion	In_Frame_Del	DEL	GTTCCCTCAGCC	GTTCCCTCAGCC	-			P-0026780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	67	347	0	ENST00000371953.3:c.729_740del	p.Phe243_Pro246del	p.F243_P246del	ENST00000371953	NM_000314.4	242	gaGTTCCCTCAGCCg/gag																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78599530	78599530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	53	425	4	ENST00000306801.3:c.202G>T	p.Val68Phe	p.V68F	ENST00000306801	NM_020761.2	68	Gtt/Ttt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754599	57754599	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	32	338	0	ENST00000274289.3:c.448G>C	p.Glu150Gln	p.E150Q	ENST00000274289	NM_006622.3	150	Gag/Cag																																																																															
GATA1	2623	MSKCC	GRCh37	X	48649709	48649709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	56	633	0	ENST00000376670.3:c.193G>A	p.Asp65Asn	p.D65N	ENST00000376670	NM_002049.3	65	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0026794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	171	540	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0026794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	214	414	1	ENST00000256078.4:c.34_35delGGinsCT	p.Gly12Leu	p.G12L	ENST00000256078	NM_033360.2	12	GGt/CTt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770576	40770576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	245	488	0	ENST00000373198.4:c.2806C>T	p.Arg936Ter	p.R936*	ENST00000373198	NM_133170.3	936	Cga/Tga																																																																															
PGR	5241	MSKCC	GRCh37	11	100998972	100998972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	116	497	1	ENST00000325455.5:c.830C>T	p.Ala277Val	p.A277V	ENST00000325455	NM_001202474.3	277	gCg/gTg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967089	18967089	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1334288478		P-0026797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	240	610	1	ENST00000262803.5:c.1804G>A	p.Ala602Thr	p.A602T	ENST00000262803	NM_002911.3	602	Gca/Aca																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176054920	176054920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	71	399	5	ENST00000367669.3:c.1133G>A	p.Arg378His	p.R378H	ENST00000367669	NM_022457.5	378	cGt/cAt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115852	8115853	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-	rs1085307641		P-0026797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	203	550	0	ENST00000346208.3:c.1198_1199del	p.Met400ValfsTer106	p.M400Vfs*106	ENST00000346208		400	ATg/g																																																																															
PRDM1	639	MSKCC	GRCh37	6	106554277	106554277	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	42	394	0	ENST00000369096.4:c.1805C>G	p.Pro602Arg	p.P602R	ENST00000369096	NM_001198.3	602	cCt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0026799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	235	506	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0026799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	795	405	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	246	196	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587777893		P-0026799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	242	421	0	ENST00000361445.4:c.5930C>A	p.Thr1977Lys	p.T1977K	ENST00000361445	NM_004958.3	1977	aCa/aAa																																																																															
MITF	4286	MSKCC	GRCh37	3	70014356	70014356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	213	478	0	ENST00000352241.4:c.1520G>A	p.Arg507Gln	p.R507Q	ENST00000352241	NM_198159.2	507	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0026806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	338	514	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	190	744	0	ENST00000250448.2:c.655C>T	p.Arg219Cys	p.R219C	ENST00000250448	NM_004496.3	219	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	176	245	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																																																															
APC	324	MSKCC	GRCh37	5	112157650	112157650	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	256	289	0	ENST00000257430.4:c.1370C>A	p.Ser457Ter	p.S457*	ENST00000257430	NM_000038.5	457	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576911	7576912	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0026674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	479	381	0	ENST00000269305.4:c.934_935del	p.Thr312GlnfsTer24	p.T312Qfs*24	ENST00000269305	NM_001126112.2	312	ACc/c																																																																															
CDK12	51755	MSKCC	GRCh37	17	37646961	37646961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	86	419	0	ENST00000447079.4:c.2083C>T	p.Gln695Ter	p.Q695*	ENST00000447079	NM_015083.1	695	Cag/Tag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657611	37657612	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AATGGAAGGATTGG			P-0026676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	64	397	0	ENST00000447079.4:c.2532_2545dup	p.Tyr849TrpfsTer24	p.Y849Wfs*24	ENST00000447079	NM_015083.1	843	cta/ctAATGGAAGGATTGGa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	73	228	0	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	55	256	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	72	205	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479811	67479811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	114	315	0	ENST00000327367.4:c.1118G>A	p.Arg373His	p.R373H	ENST00000327367	NM_005902.3	373	cGc/cAc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2951838	2951838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199916182		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	87	425	0	ENST00000396946.4:c.3112G>A	p.Ala1038Thr	p.A1038T	ENST00000396946	NM_032415.4	1038	Gcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	50	238	0	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	70	276	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	113	402	1	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913288		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	65	279	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346884	73346884	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	51	206	1	ENST00000377767.4:c.1333del	p.Ser445HisfsTer20	p.S445Hfs*20	ENST00000377767	NM_014953.3	445	Tca/ca																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	82	333	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739031	40739031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	79	314	2	ENST00000373198.4:c.3253G>A	p.Val1085Ile	p.V1085I	ENST00000373198	NM_133170.3	1085	Gtc/Atc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	62	252	1	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	76	280	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225603	2225603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	96	407	1	ENST00000326181.6:c.1606G>A	p.Gly536Ser	p.G536S	ENST00000326181	NM_032271.2	536	Ggc/Agc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	125	486	2	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	27	262	2	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	79	268	2	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762108866		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	44	188	0	ENST00000268489.5:c.10215dup	p.Gly3406ArgfsTer25	p.G3406Rfs*25	ENST00000268489	NM_006885.3	3405	-/C																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98268793	98268793	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	83	291	0	ENST00000331920.6:c.290delA	p.Asn97ThrfsTer20	p.N97Tfs*20	ENST00000331920	NM_000264.3	97	aAc/ac																																																																															
BRAF	673	MSKCC	GRCh37	7	140434413	140434413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	66	268	0	ENST00000288602.6:c.2285C>T	p.Ala762Val	p.A762V	ENST00000288602	NM_004333.4	762	gCg/gTg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703538	47703538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63749932		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	84	335	0	ENST00000233146.2:c.2038C>T	p.Arg680Ter	p.R680*	ENST00000233146	NM_000251.2	680	Cga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543829	212543829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	53	269	1	ENST00000342788.4:c.1570C>T	p.Arg524Cys	p.R524C	ENST00000342788	NM_005235.2	524	Cgc/Tgc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618715	37618716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	56	355	2	ENST00000447079.4:c.397dupA	p.Ser133LysfsTer24	p.S133Kfs*24	ENST00000447079	NM_015083.1	131	gaa/gAaa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15967432	15967432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	87	351	0	ENST00000268712.3:c.5171G>A	p.Arg1724Gln	p.R1724Q	ENST00000268712	NM_006311.3	1724	cGg/cAg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806569	1806569	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182935140		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	103	377	0	ENST00000260795.2:c.1285G>A	p.Ala429Thr	p.A429T	ENST00000260795		429	Gcg/Acg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459777	149459777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	96	431	1	ENST00000286301.3:c.430C>T	p.Arg144Cys	p.R144C	ENST00000286301	NM_005211.3	144	Cgt/Tgt																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46546324	46546324	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	71	239	2	ENST00000262741.5:c.205del	p.Asp69IlefsTer7	p.D69Ifs*7	ENST00000262741	NM_003629.3	69	Gat/at																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538941	187538941	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	60	273	1	ENST00000441802.2:c.8799delA	p.Gly2934ValfsTer3	p.G2934Vfs*3	ENST00000441802	NM_005245.3	2933	caA/ca																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	83	395	2	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56494881	56494881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	114	294	1	ENST00000267101.3:c.3238C>T	p.Arg1080Cys	p.R1080C	ENST00000267101	NM_001982.3	1080	Cgt/Tgt																																																																															
TAP1	6890	MSKCC	GRCh37	6	32814948	32814948	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	156	326	0	ENST00000354258.4:c.2117del	p.Gly706ValfsTer12	p.G706Vfs*12	ENST00000354258	NM_000593.5	706	gGt/gt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144027	11144027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	104	385	0	ENST00000344626.4:c.3608G>A	p.Arg1203His	p.R1203H	ENST00000344626	NM_003072.3	1203	cGc/cAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589609	67589610	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	59	190	0	ENST00000274335.5:c.1378dupA	p.Ser460LysfsTer5	p.S460Kfs*5	ENST00000274335		458	gaa/gAaa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15938117	15938117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	60	188	0	ENST00000268712.3:c.7097C>T	p.Thr2366Met	p.T2366M	ENST00000268712	NM_006311.3	2366	aCg/aTg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621185	1621185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	96	410	1	ENST00000344749.5:c.961C>T	p.Arg321Ter	p.R321*	ENST00000344749	NM_001136139.2	321	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021277	31021277	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	33	311	0	ENST00000375687.4:c.1281del	p.Lys427AsnfsTer35	p.K427Nfs*35	ENST00000375687	NM_015338.5	426	Aaa/aa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228164	36228164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	87	355	0	ENST00000222270.7:c.7550G>A	p.Arg2517Gln	p.R2517Q	ENST00000222270	NM_014727.1	2517	cGg/cAg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2115581	2115581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	130	415	1	ENST00000219476.3:c.1661C>T	p.Ser554Leu	p.S554L	ENST00000219476	NM_000548.3	554	tCg/tTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437711	49437713	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	103	377	0	ENST00000301067.7:c.5257_5259del	p.Lys1753del	p.K1753del	ENST00000301067	NM_003482.3	1753	AAG/-																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146944	38146945	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	101	524	0	ENST00000317025.8:c.3197dup	p.Asn1066LysfsTer14	p.N1066Kfs*14	ENST00000317025	NM_023034.1	1066	aac/aaAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047947	180047947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	74	383	2	ENST00000261937.6:c.2228C>T	p.Ala743Val	p.A743V	ENST00000261937	NM_182925.4	743	gCg/gTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685289	89685289	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	54	195	1	ENST00000371953.3:c.188delA	p.Asn63ThrfsTer36	p.N63Tfs*36	ENST00000371953	NM_000314.4	62	Aaa/aa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635191	87635191	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367769334		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	32	320	0	ENST00000277120.3:c.2243C>T	p.Thr748Met	p.T748M	ENST00000277120		748	aCg/aTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912140	114912140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	83	360	0	ENST00000543371.1:c.1210C>T	p.Arg404Trp	p.R404W	ENST00000543371	NM_001198531.1	404	Cgg/Tgg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11227537	11227537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	85	349	0	ENST00000361445.4:c.4291G>A	p.Gly1431Arg	p.G1431R	ENST00000361445	NM_004958.3	1431	Gga/Aga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260906	16260906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	63	252	0	ENST00000375759.3:c.8171C>T	p.Thr2724Ile	p.T2724I	ENST00000375759	NM_015001.2	2724	aCa/aTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094435	27094436	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	97	343	0	ENST00000324856.7:c.3145_3146del	p.Leu1049GlyfsTer55	p.L1049Gfs*55	ENST00000324856	NM_006015.4	1048	cCT/c																																																																															
TET1	80312	MSKCC	GRCh37	10	70332760	70332760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	66	304	0	ENST00000373644.4:c.665G>A	p.Arg222His	p.R222H	ENST00000373644	NM_030625.2	222	cGc/cAc																																																																															
HRAS	3265	MSKCC	GRCh37	11	532724	532724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	118	401	0	ENST00000311189.7:c.482G>A	p.Arg161His	p.R161H	ENST00000311189		161	cGt/cAt																																																																															
HRAS	3265	MSKCC	GRCh37	11	533532	533532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	51	460	1	ENST00000311189.7:c.371C>T	p.Thr124Ile	p.T124I	ENST00000311189		124	aCt/aTt																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200270	67200270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201348433		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	99	371	0	ENST00000312629.5:c.578G>A	p.Arg193Gln	p.R193Q	ENST00000312629	NM_003952.2	193	cGg/cAg																																																																															
CBL	867	MSKCC	GRCh37	11	119156112	119156112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	83	361	0	ENST00000264033.4:c.1777C>T	p.Arg593Trp	p.R593W	ENST00000264033	NM_005188.3	593	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426543	49426543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	153	431	1	ENST00000301067.7:c.11945G>A	p.Arg3982Gln	p.R3982Q	ENST00000301067	NM_003482.3	3982	cGa/cAa																																																																															
POLE	5426	MSKCC	GRCh37	12	133234521	133234521	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs531705054		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	69	300	1	ENST00000320574.5:c.3311C>T	p.Thr1104Met	p.T1104M	ENST00000320574	NM_006231.2	1104	aCg/aTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133241894	133241894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	77	338	0	ENST00000320574.5:c.2462G>A	p.Arg821His	p.R821H	ENST00000320574	NM_006231.2	821	cGc/cAc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100025	30100025	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	41	384	0	ENST00000331968.5:c.1595G>A	p.Trp532Ter	p.W532*	ENST00000331968	NM_002742.2	532	tGg/tAg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135376	30135376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	82	271	0	ENST00000331968.5:c.442G>A	p.Ala148Thr	p.A148T	ENST00000331968	NM_002742.2	148	Gct/Act																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570368	95570368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	47	195	0	ENST00000343455.3:c.3365G>A	p.Cys1122Tyr	p.C1122Y	ENST00000343455	NM_177438.2	1122	tGt/tAt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99250880	99250880	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	47	286	0	ENST00000268035.6:c.184C>A	p.Leu62Met	p.L62M	ENST00000268035	NM_000875.3	62	Ctg/Atg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348076	348076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	30	419	0	ENST00000262320.3:c.1430G>A	p.Arg477His	p.R477H	ENST00000262320	NM_003502.3	477	cGt/cAt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2106730	2106730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	126	396	0	ENST00000219476.3:c.734G>A	p.Arg245His	p.R245H	ENST00000219476	NM_000548.3	245	cGc/cAc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30129423	30129423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	103	352	1	ENST00000263025.4:c.605C>T	p.Thr202Met	p.T202M	ENST00000263025	NM_002746.2	202	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822307	72822307	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	52	448	0	ENST00000268489.5:c.9868G>T	p.Ala3290Ser	p.A3290S	ENST00000268489	NM_006885.3	3290	Gcc/Tcc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37649131	37649131	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	73	277	0	ENST00000447079.4:c.2236G>T	p.Asp746Tyr	p.D746Y	ENST00000447079	NM_015083.1	746	Gac/Tac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866709	37866710	+	missense_variant	Missense_Mutation	DNP	CG	CG	TA			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	114	380	2	ENST00000269571.5:c.876_877delinsTA	p.Ala293Thr	p.A293T	ENST00000269571		292	ggCGcc/ggTAcc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879801	37879801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	78	254	0	ENST00000269571.5:c.2096C>T	p.Pro699Leu	p.P699L	ENST00000269571		699	cCg/cTg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40858194	40858194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	80	390	0	ENST00000428826.2:c.1670G>A	p.Arg557His	p.R557H	ENST00000428826		557	cGt/cAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439903	56439903	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	167	345	0	ENST00000407977.2:c.687+2T>C		p.X229_splice	ENST00000407977		229																																																																																
AXIN2	8313	MSKCC	GRCh37	17	63554231	63554232	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GATGGAATCAATC			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	155	335	0	ENST00000307078.5:c.495_507dup	p.Met170AspfsTer2	p.M170Dfs*2	ENST00000307078	NM_004655.3	169	-/GATTGATTCCATC																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244243	5244243	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	74	336	1	ENST00000357368.4:c.1239delC	p.Ser414AlafsTer30	p.S414Afs*30	ENST00000357368	NM_002850.3	413	ccC/cc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250363	10250363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	80	209	0	ENST00000340748.4:c.3889G>A	p.Gly1297Ser	p.G1297S	ENST00000340748		1297	Ggc/Agc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18272852	18272852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	89	412	0	ENST00000222254.8:c.892G>A	p.Ala298Thr	p.A298T	ENST00000222254	NM_005027.3	298	Gcg/Acg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210913	36210913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	45	381	1	ENST00000222270.7:c.664C>T	p.Arg222Trp	p.R222W	ENST00000222270	NM_014727.1	222	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212307	36212308	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	85	411	0	ENST00000222270.7:c.2061_2062del	p.Pro688SerfsTer2	p.P688Sfs*2	ENST00000222270	NM_014727.1	686	gaCTct/gact																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702368	47702369	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATACTTTG			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	73	236	0	ENST00000233146.2:c.1966_1973dup	p.Glu658AspfsTer30	p.E658Dfs*30	ENST00000233146	NM_000251.2	655	gta/gtATACTTTGa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264407	46264407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	100	289	0	ENST00000371998.3:c.1454G>A	p.Arg485His	p.R485H	ENST00000371998		485	cGt/cAt																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29092957	29092957	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	86	302	0	ENST00000328354.6:c.1027A>T	p.Ile343Phe	p.I343F	ENST00000328354	NM_007194.3	343	Att/Ttt																																																																															
NF2	4771	MSKCC	GRCh37	22	30069366	30069366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	174	400	1	ENST00000338641.4:c.1231C>T	p.Arg411Cys	p.R411C	ENST00000338641	NM_000268.3	411	Cgc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628572	187628572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	130	425	0	ENST00000441802.2:c.2410G>A	p.Ala804Thr	p.A804T	ENST00000441802	NM_005245.3	804	Gcg/Acg																																																																															
SDHA	6389	MSKCC	GRCh37	5	235329	235329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	61	338	0	ENST00000264932.6:c.1135C>T	p.Arg379Cys	p.R379C	ENST00000264932	NM_004168.2	379	Cgc/Tgc																																																																															
STK19	8859	MSKCC	GRCh37	6	31948505	31948505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	87	176	0	ENST00000375331.2:c.976C>T	p.Arg326Trp	p.R326W	ENST00000375331	NM_004197.1	326	Cgg/Tgg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129146	152129146	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	94	412	1	ENST00000206249.3:c.103del	p.Leu35TrpfsTer74	p.L35Wfs*74	ENST00000206249	NM_000125.3	33	atC/at																																																																															
SMO	6608	MSKCC	GRCh37	7	128845479	128845479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	102	400	0	ENST00000249373.3:c.776C>T	p.Ser259Leu	p.S259L	ENST00000249373	NM_005631.4	259	tCg/tTg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162915	38162915	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199766344		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	133	395	0	ENST00000317025.8:c.2291G>A	p.Arg764His	p.R764H	ENST00000317025	NM_023034.1	764	cGt/cAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864663	68864663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	29	164	0	ENST00000288368.4:c.34G>A	p.Glu12Lys	p.E12K	ENST00000288368	NM_024870.2	12	Gag/Aag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956778	68956778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	41	388	0	ENST00000288368.4:c.896G>A	p.Arg299Gln	p.R299Q	ENST00000288368	NM_024870.2	299	cGg/cAg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69028127	69028127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	88	426	0	ENST00000288368.4:c.3286G>A	p.Asp1096Asn	p.D1096N	ENST00000288368	NM_024870.2	1096	Gat/Aat																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737945	145737945	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	36	355	0	ENST00000428558.2:c.2886-1G>T		p.X962_splice	ENST00000428558	NM_004260.3	962																																																																																
BCOR	54880	MSKCC	GRCh37	X	39914694	39914694	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	108	358	0	ENST00000378444.4:c.4668del	p.Thr1557ProfsTer11	p.T1557Pfs*11	ENST00000378444	NM_001123385.1	1556	ccC/cc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410971	63410971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	78	382	0	ENST00000330258.3:c.2196G>A	p.Met732Ile	p.M732I	ENST00000330258	NM_152424.3	732	atG/atA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0026680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	96	344	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717733	89717733	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	51	246	0	ENST00000371953.3:c.758T>A	p.Ile253Asn	p.I253N	ENST00000371953	NM_000314.4	253	aTc/aAc																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031883	26031884	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0026680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	20	148	0	ENST00000244661.2:c.405_406delAG	p.Arg135SerfsTer12	p.R135Sfs*12	ENST00000244661	NM_003537.3	135	agAGcg/agcg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427614	49427614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	49	296	0	ENST00000301067.7:c.10874C>T	p.Pro3625Leu	p.P3625L	ENST00000301067	NM_003482.3	3625	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574029	7574029	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	49	335	0	ENST00000269305.4:c.998G>C	p.Arg333Pro	p.R333P	ENST00000269305	NM_001126112.2	333	cGt/cCt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78519487	78519487	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	66	314	0	ENST00000306801.3:c.58G>C	p.Asp20His	p.D20H	ENST00000306801	NM_020761.2	20	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0026682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	28	418	1	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65344741	65344741	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	29	187	0	ENST00000342505.4:c.296A>G	p.Asp99Gly	p.D99G	ENST00000342505	NM_002227.2	99	gAc/gGc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636701	176636701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	104	258	0	ENST00000439151.2:c.1301C>T	p.Pro434Leu	p.P434L	ENST00000439151	NM_022455.4	434	cCc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	94	568	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602763	10602763	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs774469695		P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	168	717	0	ENST00000171111.5:c.815G>T	p.Arg272Leu	p.R272L	ENST00000171111	NM_203500.1	272	cGc/cTc																																																																															
CDC42	998	MSKCC	GRCh37	1	22417972	22417972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	25	129	0	ENST00000344548.3:c.538C>T	p.Pro180Ser	p.P180S	ENST00000344548	NM_001039802.1	180	Cca/Tca																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71945357	71945357	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	186	748	0	ENST00000298229.2:c.2245G>T	p.Glu749Ter	p.E749*	ENST00000298229	NM_001567.3	749	Gag/Tag																																																																															
POLE	5426	MSKCC	GRCh37	12	133226469	133226469	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	64	393	0	ENST00000320574.5:c.3589A>G	p.Met1197Val	p.M1197V	ENST00000320574	NM_006231.2	1197	Atg/Gtg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28919688	28919689	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	55	380	1	ENST00000282397.4:c.2249-1_2249delinsTT		p.X750_splice	ENST00000282397	NM_002019.4	750																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3778802	3778802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	98	713	2	ENST00000262367.5:c.6246G>T	p.Gln2082His	p.Q2082H	ENST00000262367	NM_004380.2	2082	caG/caT																																																																															
ERG	2078	MSKCC	GRCh37	21	39870295	39870295	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	61	394	0	ENST00000288319.7:c.10A>G	p.Thr4Ala	p.T4A	ENST00000288319	NM_182918.3	4	Act/Gct																																																																															
MITF	4286	MSKCC	GRCh37	3	69928394	69928394	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	59	433	0	ENST00000352241.4:c.214G>T	p.Glu72Ter	p.E72*	ENST00000352241	NM_198159.2	72	Gag/Tag																																																																															
ATRX	546	MSKCC	GRCh37	X	76888750	76888750	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	68	559	0	ENST00000373344.5:c.5079G>T	p.Arg1693Ser	p.R1693S	ENST00000373344	NM_000489.3	1693	agG/agT																																																																															
ATRX	546	MSKCC	GRCh37	X	76938103	76938106	+	frameshift_variant	Frame_Shift_Del	DEL	TTTC	TTTC	-			P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	88	624	1	ENST00000373344.5:c.2642_2645del	p.Arg881AsnfsTer23	p.R881Nfs*23	ENST00000373344	NM_000489.3	881	aGAAAa/aa																																																																															
ATM	472	MSKCC	GRCh37	11	108165782	108165783	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	A			P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	128	474	0	ENST00000278616.4:c.4905_4906delinsA	p.Gln1636ArgfsTer10	p.Q1636Rfs*10	ENST00000278616	NM_000051.3	1635	tcTCag/tcAag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533630	63533631	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	A			P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	138	646	0	ENST00000307078.5:c.1523_1524delinsT	p.Lys508IlefsTer181	p.K508Ifs*181	ENST00000307078	NM_004655.3	508	aAG/aT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	424	641	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191385	185191385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	141	606	1	ENST00000265026.3:c.2266G>A	p.Asp756Asn	p.D756N	ENST00000265026	NM_004721.4	756	Gac/Aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	675	604	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242494	55242494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	641	534	0	ENST00000275493.2:c.2264C>G	p.Ala755Gly	p.A755G	ENST00000275493	NM_005228.3	755	gCc/gGc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176666819	176666819	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	115	549	0	ENST00000439151.2:c.4255G>C	p.Asp1419His	p.D1419H	ENST00000439151	NM_022455.4	1419	Gac/Cac																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98218654	98218654	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	108	476	0	ENST00000331920.6:c.3210G>A	p.Met1070Ile	p.M1070I	ENST00000331920	NM_000264.3	1070	atG/atA																																																																															
CUL3	8452	MSKCC	GRCh37	2	225378351	225378351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	85	310	0	ENST00000264414.4:c.544G>A	p.Ala182Thr	p.A182T	ENST00000264414	NM_003590.4	182	Gca/Aca																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876343	35876343	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200570812		P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	217	498	0	ENST00000303115.3:c.1135G>A	p.Ala379Thr	p.A379T	ENST00000303115	NM_002185.3	379	Gcc/Acc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11288928	11288928	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1481	78	525	0	ENST00000361445.4:c.2827C>G	p.Leu943Val	p.L943V	ENST00000361445	NM_004958.3	943	Ctg/Gtg																																																																															
BCL10	8915	MSKCC	GRCh37	1	85736388	85736388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	186	437	0	ENST00000370580.1:c.259C>T	p.Arg87Trp	p.R87W	ENST00000370580	NM_003921.4	87	Cgg/Tgg																																																																															
INSR	3643	MSKCC	GRCh37	19	7117297	7117297	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145697152		P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	59	695	1	ENST00000302850.5:c.3919G>A	p.Glu1307Lys	p.E1307K	ENST00000302850	NM_000208.2	1307	Gag/Aag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10260290	10260290	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	66	584	0	ENST00000340748.4:c.2377C>G	p.His793Asp	p.H793D	ENST00000340748		793	Cac/Gac																																																																															
AKT2	208	MSKCC	GRCh37	19	40762872	40762872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	87	661	0	ENST00000392038.2:c.136G>C	p.Asp46His	p.D46H	ENST00000392038	NM_001626.4	46	Gat/Cat																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0026691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	200	550	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0026691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	267	629	0	ENST00000269305.4:c.672G>T	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaT																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646376	23646377	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1229	290	505	0	ENST00000261584.4:c.1490dup	p.Asn497LysfsTer2	p.N497Kfs*2	ENST00000261584	NM_024675.3	497	aat/aaAt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59853800	59853800	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	248	537	0	ENST00000259008.2:c.2059G>C	p.Val687Leu	p.V687L	ENST00000259008	NM_032043.2	687	Gtg/Ctg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350927	89350927	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1334	83	944	0	ENST00000301030.4:c.2023G>C	p.Glu675Gln	p.E675Q	ENST00000301030	NM_001256183.1	675	Gag/Cag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170519	11170519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	76	699	0	ENST00000344626.4:c.4726G>A	p.Glu1576Lys	p.E1576K	ENST00000344626	NM_003072.3	1576	Gag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170531	11170531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	72	701	0	ENST00000344626.4:c.4738G>A	p.Glu1580Lys	p.E1580K	ENST00000344626	NM_003072.3	1580	Gag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170528	11170528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	70	705	1	ENST00000344626.4:c.4735G>A	p.Glu1579Lys	p.E1579K	ENST00000344626	NM_003072.3	1579	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0026694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	322	625	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579585	7579585	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	219	637	2	ENST00000269305.4:c.102del	p.Leu35CysfsTer9	p.L35Cfs*9	ENST00000269305	NM_001126112.2	34	ccC/cc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746132	162746132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	246	389	0	ENST00000367921.3:c.2255G>A	p.Arg752His	p.R752H	ENST00000367921	NM_006182.2	752	cGc/cAc																																																																															
RET	5979	MSKCC	GRCh37	10	43600427	43600427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	155	553	4	ENST00000355710.3:c.653C>T	p.Pro218Leu	p.P218L	ENST00000355710	NM_020975.4	218	cCg/cTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0026695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	431	651	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0026695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	411	410	1	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7978925	7978925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	204	513	0	ENST00000319144.4:c.1642C>T	p.Arg548Trp	p.R548W	ENST00000319144	NM_001139.2	548	Cgg/Tgg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56857674	56857674	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144804729		P-0026698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	287	626	1	ENST00000308159.5:c.710C>T	p.Pro237Leu	p.P237L	ENST00000308159	NM_014669.4	237	cCg/cTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877859	151877860	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	450	452	0	ENST00000262189.6:c.7085dup	p.Gly2363ArgfsTer4	p.G2363Rfs*4	ENST00000262189	NM_170606.2	2362	tca/tcCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	614	546	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18699324	18699324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	609	474	1	ENST00000266497.5:c.3425G>A	p.Arg1142His	p.R1142H	ENST00000266497		1142	cGt/cAt																																																																															
CDK8	1024	MSKCC	GRCh37	13	26959432	26959432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	319	544	0	ENST00000381527.3:c.599G>A	p.Arg200Gln	p.R200Q	ENST00000381527	NM_001260.1	200	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175411	112175412	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	202	341	0	ENST00000257430.4:c.4122dup	p.His1375ThrfsTer11	p.H1375Tfs*11	ENST00000257430	NM_000038.5	1374	gaa/gAaa																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165852	118165852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	308	470	0	ENST00000369448.3:c.362C>T	p.Pro121Leu	p.P121L	ENST00000369448	NM_017709.3	121	cCa/cTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	211	585	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858503	57858503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	239	709	1	ENST00000228682.2:c.241C>T	p.Arg81Trp	p.R81W	ENST00000228682	NM_005269.2	81	Cgg/Tgg																																																																															
RB1	5925	MSKCC	GRCh37	13	48953728	48953728	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0026701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	222	315	0	ENST00000267163.4:c.1333-2A>G		p.X445_splice	ENST00000267163	NM_000321.2	445																																																																																
STK11	6794	MSKCC	GRCh37	19	1220706	1220706	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs878853992		P-0026701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	370	596	0	ENST00000326873.7:c.724G>T	p.Gly242Trp	p.G242W	ENST00000326873	NM_000455.4	242	Ggg/Tgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602618	10602621	+	frameshift_variant	Frame_Shift_Del	DEL	CCGG	CCGG	-			P-0026701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	378	645	0	ENST00000171111.5:c.957_960del	p.Cys319TrpfsTer8	p.C319Wfs*8	ENST00000171111	NM_203500.1	319	tgCCGG/tg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61722714	61722714	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	134	498	0	ENST00000401558.2:c.923A>G	p.Tyr308Cys	p.Y308C	ENST00000401558	NM_003400.3	308	tAc/tGc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041582	47041582	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	190	399	3	ENST00000329236.7:c.1573C>T	p.Gln525Ter	p.Q525*	ENST00000329236	NM_001204466.1	525	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	265	473	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0012912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1250	196	656	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0012912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	192	499	2	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	105	546	0	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT																																																																															
MGA	23269	MSKCC	GRCh37	15	42052633	42052633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1378	108	785	1	ENST00000219905.7:c.7304G>A	p.Arg2435Gln	p.R2435Q	ENST00000219905	NM_001164273.1	2435	cGg/cAg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273958	10273958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1085	154	621	1	ENST00000330684.3:c.311C>T	p.Thr104Met	p.T104M	ENST00000330684	NM_001134407.1	104	aCg/aTg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484772	57484772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	274	511	0	ENST00000371085.3:c.752G>A	p.Ser251Asn	p.S251N	ENST00000371085	NM_000516.4	251	aGc/aAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411005	63411005	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	64	655	0	ENST00000330258.3:c.2162T>G	p.Leu721Arg	p.L721R	ENST00000330258	NM_152424.3	721	cTc/cGc																																																																															
APC	324	MSKCC	GRCh37	5	112173912	112173913	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	184	349	0	ENST00000257430.4:c.2624dup	p.Arg876AlafsTer36	p.R876Afs*36	ENST00000257430	NM_000038.5	874	tca/tcAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0019607-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	196	644	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
SETD8	387893	MSKCC	GRCh37	12	123874031	123874031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019607-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			112	10	60	0	ENST00000330479.4:c.62C>T	p.Ala21Val	p.A21V	ENST00000330479	NM_020382.3	21	gCg/gTg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162722905	162722905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019607-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	72	623	0	ENST00000367921.3:c.103G>C	p.Gly35Arg	p.G35R	ENST00000367921	NM_006182.2	35	Ggc/Cgc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50818262	50818262	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019607-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			743	42	431	0	ENST00000398568.2:c.1840C>G	p.Leu614Val	p.L614V	ENST00000398568	NM_001042412.1	614	Ctg/Gtg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028623	12028623	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019607-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			705	55	402	2	ENST00000353533.5:c.826G>T	p.Asp276Tyr	p.D276Y	ENST00000353533	NM_003010.3	276	Gac/Tac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880221	37880221	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019607-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1202	78	738	0	ENST00000269571.5:c.2265G>C	p.Leu755Phe	p.L755F	ENST00000269571		755	ttG/ttC																																																																															
MET	4233	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0019607-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	431	753	0	ENST00000397752.3:c.3028+2T>G		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49426910	49426910	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	226	524	0	ENST00000301067.7:c.11578C>T	p.Gln3860Ter	p.Q3860*	ENST00000301067	NM_003482.3	3860	Cag/Tag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	365	414	1	ENST00000397062.3:c.101G>T	p.Arg34Leu	p.R34L	ENST00000397062	NM_006164.4	34	cGa/cTa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356248	66356248	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202046693		P-0026491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	149	787	2	ENST00000273854.3:c.1249C>T	p.Arg417Trp	p.R417W	ENST00000273854	NM_004439.5	417	Cgg/Tgg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31429602	31429602	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370990538		P-0026491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	81	866	1	ENST00000344624.3:c.3196C>T	p.Arg1066Cys	p.R1066C	ENST00000344624		1066	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577555	7577568	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGGAACTGTTAC	GCAGGAACTGTTAC	-			P-0026491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	389	888	2	ENST00000269305.4:c.713_726del	p.Cys238TyrfsTer21	p.C238Yfs*21	ENST00000269305	NM_001126112.2	238	tGTAACAGTTCCTGC/t																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056094	26056094	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	107	545	0	ENST00000343677.2:c.563G>C	p.Ser188Thr	p.S188T	ENST00000343677	NM_005319.3	188	aGt/aCt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	126	473	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	56	385	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	76	560	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	64	318	1	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955165	17955165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	81	791	1	ENST00000458235.1:c.62C>T	p.Thr21Met	p.T21M	ENST00000458235	NM_000215.3	21	aCg/aTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	65	493	1	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088788	27088788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	67	559	0	ENST00000324856.7:c.2402del	p.Gly801ValfsTer32	p.G801Vfs*32	ENST00000324856	NM_006015.4	799	caG/ca																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	64	522	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68352608	68352608	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61755649		P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	44	358	0	ENST00000487270.1:c.475C>T	p.Arg159Cys	p.R159C	ENST00000487270	NM_133509.3	159	Cgt/Tgt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740623	58740624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs763475304		P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	65	619	3	ENST00000305921.3:c.1535dup	p.Asn512LysfsTer16	p.N512Kfs*16	ENST00000305921	NM_003620.3	510	caa/cAaa																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40375459	40375459	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	87	629	0	ENST00000293328.3:c.491del	p.Lys164SerfsTer17	p.K164Sfs*17	ENST00000293328	NM_012448.3	164	aAg/ag																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513282	44513287	+	inframe_deletion	In_Frame_Del	DEL	CCACCG	CCACCG	-			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	71	785	1	ENST00000291552.4:c.648_653delCGGTGG	p.Gly222_Gly223del	p.G222_G223del	ENST00000291552	NM_006758.2	216	ggCGGTGGt/ggt																																																																															
INHA	3623	MSKCC	GRCh37	2	220437230	220437230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	120	832	3	ENST00000243786.2:c.134C>T	p.Ala45Val	p.A45V	ENST00000243786	NM_002191.3	45	gCg/gTg																																																																															
B2M	567	MSKCC	GRCh37	15	45007901	45007901	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	38	320	0	ENST00000558401.1:c.346+2T>C		p.X116_splice	ENST00000558401	NM_004048.2	116																																																																																
ATRX	546	MSKCC	GRCh37	X	76920173	76920173	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	45	543	4	ENST00000373344.5:c.3904del	p.Arg1302GlufsTer44	p.R1302Efs*44	ENST00000373344	NM_000489.3	1302	Aga/ga																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2185874	2185874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	134	777	0	ENST00000398665.3:c.146C>T	p.Pro49Leu	p.P49L	ENST00000398665	NM_032482.2	49	cCg/cTg																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72866457	72866457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	48	411	0	ENST00000325599.8:c.806G>A	p.Arg269His	p.R269H	ENST00000325599	NM_018130.2	269	cGt/cAt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742888	17742888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	94	708	1	ENST00000250003.3:c.796G>A	p.Ala266Thr	p.A266T	ENST00000250003	NM_002478.4	266	Gcg/Acg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276756	15276756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	72	701	2	ENST00000263388.2:c.5509C>T	p.Arg1837Cys	p.R1837C	ENST00000263388	NM_000435.2	1837	Cgt/Tgt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440643	56440643	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	88	537	1	ENST00000407977.2:c.575del	p.Pro192ArgfsTer11	p.P192Rfs*11	ENST00000407977		192	cCg/cg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106917	27106917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	61	437	0	ENST00000324856.7:c.6532del	p.Asp2178ThrfsTer22	p.D2178Tfs*22	ENST00000324856	NM_006015.4	2176	caG/ca																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563349	21563349	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	101	924	0	ENST00000382592.4:c.570del	p.Tyr191ThrfsTer49	p.Y191Tfs*49	ENST00000382592	NM_014572.2	190	ccC/cc																																																																															
RARA	5914	MSKCC	GRCh37	17	38512401	38512401	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	79	612	1	ENST00000254066.5:c.1312G>C	p.Ala438Pro	p.A438P	ENST00000254066	NM_000964.3	438	Gcc/Ccc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	89	608	0	ENST00000349310.3:c.155T>G	p.Leu52Arg	p.L52R	ENST00000349310	NM_001014432.1	52	cTc/cGc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52582147	52582147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	73	387	0	ENST00000394830.3:c.4681C>T	p.Arg1561Cys	p.R1561C	ENST00000394830	NM_018313.4	1561	Cgc/Tgc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681120	117681120	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	64	513	0	ENST00000368508.3:c.3500delT	p.Leu1167Ter	p.L1167*	ENST00000368508	NM_002944.2	1167	tTa/ta																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222730	5222731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	73	656	1	ENST00000357368.4:c.3072dupC	p.Val1025ArgfsTer34	p.V1025Rfs*34	ENST00000357368	NM_002850.3	1024	-/C																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998128	169998128	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs753143066		P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	89	765	8	ENST00000295797.4:c.826del	p.Thr276GlnfsTer7	p.T276Qfs*7	ENST00000295797	NM_002740.5	273	ttA/tt																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84391358	84391358	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	74	543	0	ENST00000321945.7:c.474del	p.Gly159AspfsTer8	p.G159Dfs*8	ENST00000321945	NM_139076.2	158	aaA/aa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527931	103527931	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs4150388		P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	30	342	0	ENST00000355739.4:c.3239G>A	p.Gly1080Glu	p.G1080E	ENST00000355739	NM_000123.3	1080	gGa/gAa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139418346	139418346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	113	874	0	ENST00000277541.6:c.226G>A	p.Val76Met	p.V76M	ENST00000277541	NM_017617.3	76	Gtg/Atg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780873	9780873	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	106	837	1	ENST00000377346.4:c.1595G>T	p.Trp532Leu	p.W532L	ENST00000377346	NM_005026.3	532	tGg/tTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462033	120462033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	79	572	2	ENST00000256646.2:c.5683C>T	p.Arg1895Cys	p.R1895C	ENST00000256646	NM_024408.3	1895	Cgt/Tgt																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551904	150551904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	38	365	1	ENST00000369026.2:c.103C>T	p.Leu35Phe	p.L35F	ENST00000369026	NM_021960.4	35	Ctt/Ttt																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14380331	14380331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	56	406	0	ENST00000256196.4:c.86C>T	p.Ala29Val	p.A29V	ENST00000256196		29	gCg/gTg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741475	17741475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	94	765	0	ENST00000250003.3:c.146G>A	p.Arg49His	p.R49H	ENST00000250003	NM_002478.4	49	cGc/cAc																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61213502	61213502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	67	508	0	ENST00000301761.2:c.460C>T	p.Arg154Cys	p.R154C	ENST00000301761	NM_017841.2	154	Cgt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108151826	108151826	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	52	503	0	ENST00000278616.4:c.3507A>C	p.Glu1169Asp	p.E1169D	ENST00000278616	NM_000051.3	1169	gaA/gaC																																																																															
ATM	472	MSKCC	GRCh37	11	108173730	108173730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	59	381	0	ENST00000278616.4:c.5470C>A	p.Leu1824Ile	p.L1824I	ENST00000278616	NM_000051.3	1824	Ctt/Att																																																																															
ATM	472	MSKCC	GRCh37	11	108201015	108201015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	34	407	0	ENST00000278616.4:c.7382G>A	p.Arg2461His	p.R2461H	ENST00000278616	NM_000051.3	2461	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434142	49434142	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	119	806	0	ENST00000301067.7:c.7411del	p.Arg2471AspfsTer14	p.R2471Dfs*14	ENST00000301067	NM_003482.3	2471	Cga/ga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434354	49434354	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	82	761	0	ENST00000301067.7:c.7199del	p.Pro2400LeufsTer26	p.P2400Lfs*26	ENST00000301067	NM_003482.3	2400	cCt/ct																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549059	21549059	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	43	301	0	ENST00000382592.4:c.3217A>C	p.Ser1073Arg	p.S1073R	ENST00000382592	NM_014572.2	1073	Agc/Cgc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29007975	29007975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	28	259	0	ENST00000282397.4:c.794C>A	p.Thr265Asn	p.T265N	ENST00000282397	NM_002019.4	265	aCc/aAc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103506194	103506194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	54	502	0	ENST00000355739.4:c.352G>T	p.Ala118Ser	p.A118S	ENST00000355739	NM_000123.3	118	Gcc/Tcc																																																																															
RAD51	5888	MSKCC	GRCh37	15	40998474	40998474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	76	666	0	ENST00000267868.3:c.325C>T	p.Leu109Phe	p.L109F	ENST00000267868	NM_002875.4	109	Ctt/Ttt																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66777436	66777436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	81	652	0	ENST00000307102.5:c.802G>A	p.Ala268Thr	p.A268T	ENST00000307102	NM_002755.3	268	Gcc/Acc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420270	88420270	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	59	500	0	ENST00000360948.2:c.2416T>C	p.Cys806Arg	p.C806R	ENST00000360948	NM_001012338.2	806	Tgc/Cgc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	339440	339440	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	45	591	0	ENST00000262320.3:c.2462G>T	p.Arg821Ile	p.R821I	ENST00000262320	NM_003502.3	821	aGa/aTa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2127615	2127615	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	101	696	2	ENST00000219476.3:c.2859del	p.Lys954AsnfsTer4	p.K954Nfs*4	ENST00000219476	NM_000548.3	952	Ccc/cc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779754	3779755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	76	531	0	ENST00000262367.5:c.5293dup	p.Gln1765ProfsTer201	p.Q1765Pfs*201	ENST00000262367	NM_004380.2	1765	cag/cCag																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489474	40489474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	81	490	0	ENST00000264657.5:c.776G>A	p.Cys259Tyr	p.C259Y	ENST00000264657	NM_139276.2	259	tGc/tAc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40857166	40857166	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	61	391	0	ENST00000428826.2:c.1875G>T	p.Trp625Cys	p.W625C	ENST00000428826		625	tgG/tgT																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58725429	58725429	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	50	524	0	ENST00000305921.3:c.1008del	p.Lys336AsnfsTer3	p.K336Nfs*3	ENST00000305921	NM_003620.3	335	Aaa/aa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220643	1220643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	108	773	0	ENST00000326873.7:c.661C>T	p.Pro221Ser	p.P221S	ENST00000326873	NM_000455.4	221	Ccg/Tcg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15295806	15295806	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	117	913	1	ENST00000263388.2:c.2321C>A	p.Pro774His	p.P774H	ENST00000263388	NM_000435.2	774	cCc/cAc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17950344	17950344	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	118	751	1	ENST00000458235.1:c.1383del	p.Leu462CysfsTer3	p.L462Cfs*3	ENST00000458235	NM_000215.3	461	ggG/gg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228599	36228599	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	99	836	0	ENST00000222270.7:c.7613C>G	p.Ala2538Gly	p.A2538G	ENST00000222270	NM_014727.1	2538	gCc/gGc																																																																															
ALK	238	MSKCC	GRCh37	2	29551306	29551306	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	94	719	0	ENST00000389048.3:c.1324A>G	p.Thr442Ala	p.T442A	ENST00000389048	NM_004304.4	442	Act/Gct																																																																															
REL	5966	MSKCC	GRCh37	2	61118904	61118904	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	50	497	1	ENST00000295025.8:c.97G>T	p.Gly33Cys	p.G33C	ENST00000295025	NM_002908.2	33	Ggc/Tgc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99193492	99193492	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	88	666	0	ENST00000074304.5:c.2687A>C	p.Lys896Thr	p.K896T	ENST00000074304	NM_001134224.1	896	aAg/aCg																																																																															
CASP8	841	MSKCC	GRCh37	2	202131495	202131495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	43	452	0	ENST00000358485.4:c.463G>A	p.Ala155Thr	p.A155T	ENST00000358485	NM_001080125.1	155	Gct/Act																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660795	227660795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	92	516	0	ENST00000305123.5:c.2660C>A	p.Pro887His	p.P887H	ENST00000305123	NM_005544.2	887	cCt/cAt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164773	36164773	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	59	778	0	ENST00000300305.3:c.1102A>G	p.Met368Val	p.M368V	ENST00000300305		368	Atg/Gtg																																																																															
ERG	2078	MSKCC	GRCh37	21	39755423	39755423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	41	516	3	ENST00000288319.7:c.1342G>A	p.Ala448Thr	p.A448T	ENST00000288319	NM_182918.3	448	Gcc/Acc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24129436	24129436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	36	405	0	ENST00000263121.7:c.80T>C	p.Met27Thr	p.M27T	ENST00000263121	NM_003073.3	27	aTg/aCg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247354	71247354	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	50	393	0	ENST00000318789.4:c.179A>G	p.Gln60Arg	p.Q60R	ENST00000318789	NM_032682.5	60	cAg/cGg																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84388678	84388679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	37	368	0	ENST00000321945.7:c.609dupT	p.Glu204Ter	p.E204*	ENST00000321945	NM_139076.2	203	-/T																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247382	153247383	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	31	246	0	ENST00000281708.4:c.1419_1420del	p.Arg473SerfsTer3	p.R473Sfs*3	ENST00000281708	NM_033632.3	473	agAGtt/agtt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509935	187509935	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	29	355	0	ENST00000441802.2:c.13578C>A	p.His4526Gln	p.H4526Q	ENST00000441802	NM_005245.3	4526	caC/caA																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032186	26032186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	29	251	0	ENST00000244661.2:c.103G>A	p.Gly35Ser	p.G35S	ENST00000244661	NM_003537.3	35	Ggc/Agc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152415640	152415640	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	74	586	0	ENST00000206249.3:c.1490T>C	p.Leu497Pro	p.L497P	ENST00000206249	NM_000125.3	497	cTg/cCg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157525000	157525000	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	43	329	0	ENST00000346085.5:c.4895T>A	p.Val1632Asp	p.V1632D	ENST00000346085	NM_020732.3	1632	gTt/gAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020429	69020429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	77	616	0	ENST00000288368.4:c.2801G>A	p.Cys934Tyr	p.C934Y	ENST00000288368	NM_024870.2	934	tGc/tAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021739	69021739	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	105	559	0	ENST00000288368.4:c.3027T>A	p.His1009Gln	p.H1009Q	ENST00000288368	NM_024870.2	1009	caT/caA																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033193	69033193	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	44	570	1	ENST00000288368.4:c.3637del	p.Arg1213GlyfsTer31	p.R1213Gfs*31	ENST00000288368	NM_024870.2	1211	ccA/cc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742085	145742085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	66	667	0	ENST00000428558.2:c.418C>A	p.Pro140Thr	p.P140T	ENST00000428558	NM_004260.3	140	Cca/Aca																																																																															
TEK	7010	MSKCC	GRCh37	9	27197554	27197554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	50	579	0	ENST00000380036.4:c.1870del	p.Glu624AsnfsTer33	p.E624Nfs*33	ENST00000380036	NM_000459.3	622	caG/ca																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231383	98231383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	66	699	0	ENST00000331920.6:c.1900C>T	p.His634Tyr	p.H634Y	ENST00000331920	NM_000264.3	634	Cac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	180	524	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0026511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	273	640	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112176063	112176064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	64	399	0	ENST00000257430.4:c.4778dupA	p.Pro1594AlafsTer38	p.P1594Afs*38	ENST00000257430	NM_000038.5	1591	gca/gcAa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30103628	30103628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	67	585	0	ENST00000331968.5:c.1310C>T	p.Thr437Met	p.T437M	ENST00000331968	NM_002742.2	437	aCg/aTg																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612867	228612867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	70	590	0	ENST00000366696.1:c.160C>T	p.Arg54Cys	p.R54C	ENST00000366696	NM_003493.2	54	Cgc/Tgc																																																																															
RET	5979	MSKCC	GRCh37	10	43600591	43600591	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	73	603	0	ENST00000355710.3:c.817C>G	p.Pro273Ala	p.P273A	ENST00000355710	NM_020975.4	273	Ccc/Gcc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741678	17741678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	113	538	2	ENST00000250003.3:c.349C>T	p.Arg117Cys	p.R117C	ENST00000250003	NM_002478.4	117	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112111413	112111414	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	68	338	0	ENST00000257430.4:c.511dup	p.Ser171LysfsTer6	p.S171Kfs*6	ENST00000257430	NM_000038.5	170	-/A																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030335	180030335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	54	747	1	ENST00000261937.6:c.3949G>T	p.Gly1317Trp	p.G1317W	ENST00000261937	NM_182925.4	1317	Ggg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0026525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	168	455	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746132	162746132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	43	223	0	ENST00000367921.3:c.2255G>A	p.Arg752His	p.R752H	ENST00000367921	NM_006182.2	752	cGc/cAc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56865888	56865888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	70	317	1	ENST00000308159.5:c.1220C>T	p.Ala407Val	p.A407V	ENST00000308159	NM_014669.4	407	gCg/gTg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621011	1621011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1310	208	759	0	ENST00000344749.5:c.1049C>T	p.Ser350Leu	p.S350L	ENST00000344749	NM_001136139.2	350	tCg/tTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662856	227662856	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	122	546	0	ENST00000305123.5:c.599A>C	p.Glu200Ala	p.E200A	ENST00000305123	NM_005544.2	200	gAg/gCg																																																																															
SDHB	6390	MSKCC	GRCh37	1	17371376	17371376	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	40	301	0	ENST00000375499.3:c.80G>T	p.Arg27Leu	p.R27L	ENST00000375499	NM_003000.2	27	cGa/cTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0026530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	55	393	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821643	72821645	+	inframe_deletion	In_Frame_Del	DEL	CCG	CCG	-			P-0026530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	13	96	1	ENST00000268489.5:c.10530_10532del	p.Gly3512del	p.G3512del	ENST00000268489	NM_006885.3	3510	ggCGGt/ggt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44520605	44520605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	34	350	1	ENST00000291552.4:c.157C>T	p.Arg53Cys	p.R53C	ENST00000291552	NM_006758.2	53	Cgt/Tgt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0026530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	73	296	1	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564083	139564083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	73	648	2	ENST00000308874.7:c.223C>T	p.Arg75Cys	p.R75C	ENST00000308874		75	Cgc/Tgc																																																																															
RB1	5925	MSKCC	GRCh37	13	48954327	48954328	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0026535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	54	289	0	ENST00000267163.4:c.1450_1451del	p.Met484ValfsTer8	p.M484Vfs*8	ENST00000267163	NM_000321.2	483	cAT/c																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174458	11174458	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	76	543	0	ENST00000361445.4:c.7217T>G	p.Val2406Gly	p.V2406G	ENST00000361445	NM_004958.3	2406	gTg/gGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579385	7579391	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTGGG	TTCTGGG	-			P-0026535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	70	703	0	ENST00000269305.4:c.296_302del	p.Ser99Ter	p.S99*	ENST00000269305	NM_001126112.2	99	tCCCAGAAa/ta																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468483	89468483	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	45	361	1	ENST00000336596.2:c.2017A>T	p.Ile673Phe	p.I673F	ENST00000336596	NM_005233.5	673	Att/Ttt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690801	89690805	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGTTG	AGTTG	T			P-0026535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	31	278	0	ENST00000371953.3:c.210-2_212delinsT		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	122	441	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RB1	5925	MSKCC	GRCh37	13	48955550	48955550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	84	420	1	ENST00000267163.4:c.1666C>T	p.Arg556Ter	p.R556*	ENST00000267163	NM_000321.2	556	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	88	491	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	144	667	0	ENST00000269305.4:c.856G>C	p.Glu286Gln	p.E286Q	ENST00000269305	NM_001126112.2	286	Gaa/Caa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423587	88423587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	107	540	0	ENST00000360948.2:c.2248G>A	p.Glu750Lys	p.E750K	ENST00000360948	NM_001012338.2	750	Gag/Aag																																																																															
B2M	567	MSKCC	GRCh37	15	45003746	45003746	+	start_lost	Translation_Start_Site	SNP	T	T	G			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	64	385	0	ENST00000558401.1:c.2T>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	aTg/aGg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143067041	143067041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	80	410	0	ENST00000262992.4:c.1672G>A	p.Gly558Arg	p.G558R	ENST00000262992	NM_001101669.1	558	Gga/Aga																																																																															
SESN2	83667	MSKCC	GRCh37	1	28601511	28601511	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	113	662	0	ENST00000253063.3:c.1196G>T	p.Cys399Phe	p.C399F	ENST00000253063	NM_031459.4	399	tGc/tTc																																																																															
EED	8726	MSKCC	GRCh37	11	85956350	85956350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	85	291	0	ENST00000263360.6:c.79G>A	p.Glu27Lys	p.E27K	ENST00000263360	NM_003797.3	27	Gag/Aag																																																																															
MAX	4149	MSKCC	GRCh37	14	65544631	65544631	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	88	463	0	ENST00000358664.4:c.295G>C	p.Val99Leu	p.V99L	ENST00000358664	NM_002382.4	99	Gtc/Ctc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223531	2223532	+	missense_variant	Missense_Mutation	DNP	CC	CC	GT			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	116	751	3	ENST00000326181.6:c.1062_1063delinsGT	p.Phe354_Arg355delinsLeuTrp	p.F354_R355delinsLW	ENST00000326181	NM_032271.2	354	ttCCgg/ttGTgg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639706	3639706	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	168	919	0	ENST00000294008.3:c.3933C>G	p.Ile1311Met	p.I1311M	ENST00000294008	NM_032444.2	1311	atC/atG																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639878	3639878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	101	655	1	ENST00000294008.3:c.3761C>T	p.Ser1254Leu	p.S1254L	ENST00000294008	NM_032444.2	1254	tCg/tTg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17117130	17117130	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	96	509	1	ENST00000285071.4:c.1579C>T	p.Arg527Ter	p.R527*	ENST00000285071	NM_144997.5	527	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29508758	29508758	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	87	485	0	ENST00000358273.4:c.685G>T	p.Asp229Tyr	p.D229Y	ENST00000358273	NM_001042492.2	229	Gat/Tat																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349205	15349205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	129	541	1	ENST00000263377.2:c.4072G>A	p.Glu1358Lys	p.E1358K	ENST00000263377	NM_058243.2	1358	Gaa/Aaa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39285837	39285837	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	104	553	0	ENST00000402219.2:c.322G>C	p.Glu108Gln	p.E108Q	ENST00000402219	NM_005633.3	108	Gaa/Caa																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111907638	111907638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	28	305	0	ENST00000393256.3:c.412G>A	p.Glu138Lys	p.E138K	ENST00000393256	NM_006538.4	138	Gaa/Aaa																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62316898	62316898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	142	522	1	ENST00000508582.2:c.1286C>T	p.Ser429Phe	p.S429F	ENST00000508582		429	tCc/tTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540569	187540569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	34	279	0	ENST00000441802.2:c.7171G>A	p.Glu2391Lys	p.E2391K	ENST00000441802	NM_005245.3	2391	Gaa/Aaa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500823	149500823	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	107	618	0	ENST00000261799.4:c.2407C>G	p.Leu803Val	p.L803V	ENST00000261799	NM_002609.3	803	Ctc/Gtc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528718	157528718	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	83	456	0	ENST00000346085.5:c.6443C>G	p.Ala2148Gly	p.A2148G	ENST00000346085	NM_020732.3	2148	gCc/gGc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039871	47039872	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	142	354	0	ENST00000329236.7:c.981dup	p.Ala328CysfsTer37	p.A328Cfs*37	ENST00000329236	NM_001204466.1	327	act/acTt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223532	2223532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	114	751	0	ENST00000326181.6:c.1063C>T	p.Arg355Trp	p.R355W	ENST00000326181	NM_032271.2	355	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0026614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	566	628	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	822	799	2	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971324	13971324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	283	563	0	ENST00000405192.2:c.605C>T	p.Thr202Met	p.T202M	ENST00000405192	NM_001163147.1	202	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	320	788	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	265	874	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175621	112175621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	173	604	0	ENST00000257430.4:c.4330C>T	p.Gln1444Ter	p.Q1444*	ENST00000257430	NM_000038.5	1444	Caa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106894	27106894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	100	664	0	ENST00000324856.7:c.6505G>T	p.Val2169Leu	p.V2169L	ENST00000324856	NM_006015.4	2169	Gta/Tta																																																																															
AKT3	10000	MSKCC	GRCh37	1	243778422	243778422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	169	773	0	ENST00000263826.5:c.603G>T	p.Lys201Asn	p.K201N	ENST00000263826	NM_005465.4	201	aaG/aaT																																																																															
PAK1	5058	MSKCC	GRCh37	11	77034327	77034327	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	259	860	0	ENST00000356341.3:c.1630A>G	p.Asn544Asp	p.N544D	ENST00000356341	NM_002576.4	544	Aat/Gat																																																																															
ATM	472	MSKCC	GRCh37	11	108114820	108114820	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1169	89	772	1	ENST00000278616.4:c.637T>C	p.Phe213Leu	p.F213L	ENST00000278616	NM_000051.3	213	Ttt/Ctt																																																																															
ATM	472	MSKCC	GRCh37	11	108198432	108198432	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144497088		P-0026647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	202	830	1	ENST00000278616.4:c.7036G>A	p.Ala2346Thr	p.A2346T	ENST00000278616	NM_000051.3	2346	Gca/Aca																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865708	57865708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1230	134	954	1	ENST00000228682.2:c.3185C>T	p.Pro1062Leu	p.P1062L	ENST00000228682	NM_005269.2	1062	cCt/cTt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885568	111885568	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1238	223	846	0	ENST00000341259.2:c.1345G>T	p.Glu449Ter	p.E449*	ENST00000341259	NM_005475.2	449	Gag/Tag																																																																															
RB1	5925	MSKCC	GRCh37	13	48921961	48921961	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0026647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	182	703	0	ENST00000267163.4:c.501G>T	p.Arg167Ser	p.R167S	ENST00000267163	NM_000321.2	167	agG/agT																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561471	9561471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	60	674	0	ENST00000353224.5:c.311G>T	p.Ser104Ile	p.S104I	ENST00000353224	NM_177990.2	104	aGc/aTc																																																																															
SMO	6608	MSKCC	GRCh37	7	128843242	128843242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	117	851	0	ENST00000249373.3:c.349C>A	p.Arg117Ser	p.R117S	ENST00000249373	NM_005631.4	117	Cgc/Agc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974762	21974763	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	98	286	0	ENST00000304494.5:c.64dup	p.Arg22ProfsTer22	p.R22Pfs*22	ENST00000304494	NM_000077.4	22	cgg/cCgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	-			P-0026650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	88	599	0	ENST00000275493.2:c.2237_2251del	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gca																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30105643	30105643	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	135	725	0	ENST00000331968.5:c.1043A>G	p.Asn348Ser	p.N348S	ENST00000331968	NM_002742.2	348	aAt/aGt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372129	45372129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	62	600	0	ENST00000262160.6:c.1040C>T	p.Ala347Val	p.A347V	ENST00000262160	NM_005901.5	347	gCt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0026653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	1428	461	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0026653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	517	687	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46205217	46205217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	117	412	0	ENST00000334344.6:c.301G>A	p.Glu101Lys	p.E101K	ENST00000334344	NM_152641.2	101	Gag/Aag																																																																															
RB1	5925	MSKCC	GRCh37	13	49030410	49030410	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	133	488	0	ENST00000267163.4:c.1885G>T	p.Glu629Ter	p.E629*	ENST00000267163	NM_000321.2	629	Gag/Tag																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945054	31945054	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	129	570	0	ENST00000340398.3:c.47C>A	p.Ala16Asp	p.A16D	ENST00000340398	NM_001013699.2	16	gCc/gAc																																																																															
AXL	558	MSKCC	GRCh37	19	41744007	41744007	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	298	618	0	ENST00000301178.4:c.942C>A	p.Ser314Arg	p.S314R	ENST00000301178	NM_021913.4	314	agC/agA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0026655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	416	706	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																															
TSC1	7248	MSKCC	GRCh37	9	135796795	135796795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	16	483	0	ENST00000298552.3:c.692C>T	p.Pro231Leu	p.P231L	ENST00000298552	NM_001162426.1	231	cCg/cTg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738814	145738814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1508	245	697	0	ENST00000428558.2:c.2251C>T	p.Arg751Trp	p.R751W	ENST00000428558	NM_004260.3	751	Cgg/Tgg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120132	70120133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0026655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	265	184	0	ENST00000245479.2:c.1137_1138dupGC	p.His380ArgfsTer4	p.H380Rfs*4	ENST00000245479	NM_000346.3	378	-/GC																																																																															
RET	5979	MSKCC	GRCh37	10	43606899	43606899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	537	773	1	ENST00000355710.3:c.1508C>T	p.Thr503Ile	p.T503I	ENST00000355710	NM_020975.4	503	aCa/aTa																																																																															
CDK8	1024	MSKCC	GRCh37	13	26959366	26959366	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1418353379		P-0026655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	278	387	0	ENST00000381527.3:c.533G>A	p.Arg178Gln	p.R178Q	ENST00000381527	NM_001260.1	178	cGa/cAa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45422934	45422934	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	211	495	0	ENST00000262160.6:c.194T>C	p.Ile65Thr	p.I65T	ENST00000262160	NM_005901.5	65	aTc/aCc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575206	48575206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	18	427	0	ENST00000342988.3:c.400G>A	p.Glu134Lys	p.E134K	ENST00000342988	NM_005359.5	134	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112174403	112174629	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGGAAGGCAAAGTCCTTCACAGAATGAAAGATGGGCAAGACCCAAACACATAATAGAAGATGAAATAAAACAAAGTGAGCAAAGACAATCAAGGAATCAAAGTACAACTTATCCTGTTTATACTGAGAGCACTGATGATAAACACCTCAAGTTCCAACCACATTTTGGACAGCAGGAATGTGTTTCTCCATACAGGTCACGGGGAGCCAATGGTTCAGAAACAAA	TCTGGAAGGCAAAGTCCTTCACAGAATGAAAGATGGGCAAGACCCAAACACATAATAGAAGATGAAATAAAACAAAGTGAGCAAAGACAATCAAGGAATCAAAGTACAACTTATCCTGTTTATACTGAGAGCACTGATGATAAACACCTCAAGTTCCAACCACATTTTGGACAGCAGGAATGTGTTTCTCCATACAGGTCACGGGGAGCCAATGGTTCAGAAACAAA	-			P-0026655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	133	389	0	ENST00000257430.4:c.3114_3340del	p.Gly1039SerfsTer4	p.G1039Sfs*4	ENST00000257430	NM_000038.5	1038	TCTGGAAGGCAAAGTCCTTCACAGAATGAAAGATGGGCAAGACCCAAACACATAATAGAAGATGAAATAAAACAAAGTGAGCAAAGACAATCAAGGAATCAAAGTACAACTTATCCTGTTTATACTGAGAGCACTGATGATAAACACCTCAAGTTCCAACCACATTTTGGACAGCAGGAATGTGTTTCTCCATACAGGTCACGGGGAGCCAATGGTTCAGAAACAAAt/t																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0026669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	121	322	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271364	18271364	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	129	304	0	ENST00000222254.8:c.406G>T	p.Glu136Ter	p.E136*	ENST00000222254	NM_005027.3	136	Gaa/Taa																																																																															
EP300	2033	MSKCC	GRCh37	22	41573130	41573130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	137	390	1	ENST00000263253.7:c.5415C>A	p.Phe1805Leu	p.F1805L	ENST00000263253	NM_001429.3	1805	ttC/ttA																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117755	70117755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	68	345	0	ENST00000245479.2:c.223G>A	p.Glu75Lys	p.E75K	ENST00000245479	NM_000346.3	75	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115889	8115926	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGCCACATGCTGACCACGCCCACGCCGATGCACCCG	CCAGCCACATGCTGACCACGCCCACGCCGATGCACCCG	-			P-0026670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	135	271	0	ENST00000346208.3:c.1238_1275del	p.Ser413IlefsTer81	p.S413Ifs*81	ENST00000346208		412	tCCAGCCACATGCTGACCACGCCCACGCCGATGCACCCG/t																																																																															
TOP1	7150	MSKCC	GRCh37	20	39708819	39708819	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0026670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	29	110	2	ENST00000361337.2:c.430G>A	p.Asp144Asn	p.D144N	ENST00000361337	NM_003286.2	144	Gat/Aat																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38272308	38272308	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	111	299	0	ENST00000425967.3:c.2059A>G	p.Lys687Glu	p.K687E	ENST00000425967	NM_001174067.1	687	Aag/Gag																																																																															
AKT1	207	MSKCC	GRCh37	14	105243058	105243059	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATGATGAAGGTGTTGGGCCGGGGCCGCTCCGTCTTC			P-0026671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	142	357	1	ENST00000349310.3:c.189_224dup	p.Met63_Ile74dup	p.M63_I74dup	ENST00000349310	NM_001014432.1	63	atc/atGAAGACGGAGCGGCCCCGGCCCAACACCTTCATCATc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515307	31515307	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0026671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	38	319	0	ENST00000344624.3:c.1078A>T	p.Lys360Ter	p.K360*	ENST00000344624		360	Aag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0026672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	289	412	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819212	3819212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	155	358	1	ENST00000262367.5:c.3023C>T	p.Pro1008Leu	p.P1008L	ENST00000262367	NM_004380.2	1008	cCc/cTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8471066	8471066	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	15	210	0	ENST00000356435.5:c.3433G>C	p.Val1145Leu	p.V1145L	ENST00000356435		1145	Gtg/Ctg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0026513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	196	279	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0026513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	300	551	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
NF1	4763	MSKCC	GRCh37	17	29684357	29684363	+	frameshift_variant	Frame_Shift_Del	DEL	GTGTTGT	GTGTTGT	-			P-0026513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	109	596	0	ENST00000358273.4:c.7942_7948del	p.Val2648PhefsTer29	p.V2648Ffs*29	ENST00000358273	NM_001042492.2	2647	aGTGTTGTg/ag																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732984	74732984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1859	111	461	1	ENST00000359995.5:c.259G>A	p.Val87Met	p.V87M	ENST00000359995	NM_001195427.1	87	Gtg/Atg																																																																															
KDR	3791	MSKCC	GRCh37	4	55948166	55948166	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	141	662	1	ENST00000263923.4:c.3805C>A	p.Leu1269Met	p.L1269M	ENST00000263923	NM_002253.2	1269	Ctg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0026616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	167	831	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0026616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	150	923	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	79	504	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120480479	120480479	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0026616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	70	391	0	ENST00000256646.2:c.3337+1G>T		p.X1113_splice	ENST00000256646	NM_024408.3	1113																																																																																
ARID2	196528	MSKCC	GRCh37	12	46246670	46246671	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0026616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	44	233	1	ENST00000334344.6:c.4764_4765delinsTT	p.Val1589Phe	p.V1589F	ENST00000334344	NM_152641.2	1588	gtGGtc/gtTTtc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561303	9561303	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	87	504	0	ENST00000353224.5:c.479A>T	p.Tyr160Phe	p.Y160F	ENST00000353224	NM_177990.2	160	tAt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	309	508	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47087991	47087991	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	241	479	0	ENST00000409792.3:c.7084C>T	p.Gln2362Ter	p.Q2362*	ENST00000409792	NM_014159.6	2362	Cag/Tag																																																																															
FLT1	2321	MSKCC	GRCh37	13	28919638	28919638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	303	552	0	ENST00000282397.4:c.2299G>T	p.Val767Leu	p.V767L	ENST00000282397	NM_002019.4	767	Gtg/Ttg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41420080	41420080	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	152	301	0	ENST00000373198.4:c.241G>T	p.Gly81Trp	p.G81W	ENST00000373198	NM_133170.3	81	Ggg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108164086	108164086	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	112	206	0	ENST00000278616.4:c.4661del	p.Asn1554ThrfsTer9	p.N1554Tfs*9	ENST00000278616	NM_000051.3	1553	gAa/ga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593492	48593492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	167	340	0	ENST00000342988.3:c.1243G>C	p.Asp415His	p.D415H	ENST00000342988	NM_005359.5	415	Gac/Cac																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149453025	149453025	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	202	429	0	ENST00000286301.3:c.921G>T	p.Gln307His	p.Q307H	ENST00000286301	NM_005211.3	307	caG/caT																																																																															
ABL1	25	MSKCC	GRCh37	9	133759821	133759821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	245	551	1	ENST00000318560.5:c.2144G>T	p.Arg715Leu	p.R715L	ENST00000318560	NM_005157.4	715	cGc/cTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040613	47040613	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0026624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	156	377	0	ENST00000329236.7:c.1015-1G>T		p.X339_splice	ENST00000329236	NM_001204466.1	339																																																																																
AXL	558	MSKCC	GRCh37	19	41744048	41744048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	162	598	1	ENST00000301178.4:c.983C>T	p.Thr328Met	p.T328M	ENST00000301178	NM_021913.4	328	aCg/aTg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278061	18278061	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	220	720	0	ENST00000222254.8:c.1681A>G	p.Asn561Asp	p.N561D	ENST00000222254	NM_005027.3	561	Aac/Gac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89457251	89457252	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	127	419	0	ENST00000336596.2:c.1738dup	p.Arg580LysfsTer19	p.R580Kfs*19	ENST00000336596	NM_005233.5	578	gaa/gAaa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900823	114900953	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCATCTTAGAAAATCCAGGTGAGAGGCTGTGGCCAAGGGAACCCACGGGCCCGGTGCTCTGAAGCCCTGGGCTGCTGGAACCGGCTTGACGGTGTCTTTCTCTGTTCTCCTCCCCACAGTCTAACAAAGT	TGCATCTTAGAAAATCCAGGTGAGAGGCTGTGGCCAAGGGAACCCACGGGCCCGGTGCTCTGAAGCCCTGGGCTGCTGGAACCGGCTTGACGGTGTCTTTCTCTGTTCTCCTCCCCACAGTCTAACAAAGT	-			P-0026162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	124	68	0	ENST00000543371.1:c.553-120_563del		p.X185_splice	ENST00000543371	NM_001198531.1	185																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9934603	9934603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	139	509	0	ENST00000330684.3:c.1552C>A	p.Arg518Ser	p.R518S	ENST00000330684	NM_001134407.1	518	Cgt/Agt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25976402	25976402	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0026162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	169	456	0	ENST00000435504.4:c.1142+1G>C		p.X381_splice	ENST00000435504		381																																																																																
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0026391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	218	695	3	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	176	543	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420109	49420109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	77	665	0	ENST00000301067.7:c.15640C>T	p.Arg5214Cys	p.R5214C	ENST00000301067	NM_003482.3	5214	Cgc/Tgc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114259	115114259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	84	596	1	ENST00000257566.3:c.958C>A	p.Gln320Lys	p.Q320K	ENST00000257566	NM_016569.3	320	Cag/Aag																																																																															
MGA	23269	MSKCC	GRCh37	15	42041864	42041865	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0026391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	68	650	0	ENST00000219905.7:c.6061_6062del	p.Leu2021GlufsTer2	p.L2021Efs*2	ENST00000219905	NM_001164273.1	2020	aCT/a																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096166	178096166	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	55	448	0	ENST00000397062.3:c.1165A>G	p.Lys389Glu	p.K389E	ENST00000397062	NM_006164.4	389	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0026392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	391	514	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175248	112175249	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0026392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	289	295	1	ENST00000257430.4:c.3959_3960delTG	p.Val1320GlufsTer11	p.V1320Efs*11	ENST00000257430	NM_000038.5	1319	ccTGtg/cctg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0026392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	316	546	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
FYN	2534	MSKCC	GRCh37	6	112041197	112041197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	161	411	0	ENST00000368678.4:c.58G>A	p.Gly20Ser	p.G20S	ENST00000368678		20	Ggc/Agc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289720	15289720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	458	706	0	ENST00000263388.2:c.3751G>A	p.Glu1251Lys	p.E1251K	ENST00000263388	NM_000435.2	1251	Gag/Aag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943628	9943628	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	106	482	0	ENST00000330684.3:c.1313A>C	p.Lys438Thr	p.K438T	ENST00000330684	NM_001134407.1	438	aAg/aCg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5050753	5050753	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	135	523	0	ENST00000381652.3:c.536T>A	p.Leu179His	p.L179H	ENST00000381652	NM_004972.3	179	cTt/cAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0026394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	128	430	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0026394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	74	529	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0026394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	102	517	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245506	153245506	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	32	463	0	ENST00000281708.4:c.1685C>A	p.Ser562Ter	p.S562*	ENST00000281708	NM_033632.3	562	tCa/tAa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2111996	2111996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	34	443	0	ENST00000219476.3:c.1244C>T	p.Ala415Val	p.A415V	ENST00000219476	NM_000548.3	415	gCg/gTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244148	153244148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	64	444	2	ENST00000281708.4:c.2009G>A	p.Gly670Glu	p.G670E	ENST00000281708	NM_033632.3	670	gGa/gAa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339205	65339205	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0026394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	29	374	0	ENST00000342505.4:c.331T>C	p.Phe111Leu	p.F111L	ENST00000342505	NM_002227.2	111	Ttc/Ctc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467484	66467484	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	32	318	0	ENST00000273854.3:c.785G>T	p.Cys262Phe	p.C262F	ENST00000273854	NM_004439.5	262	tGt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	427	595	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495704	72495704	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	511	448	1	ENST00000477973.2:c.366A>G	p.Asn123Ser	p.N123S	ENST00000477973	NM_012234.5	123	aAc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	485	636	0	ENST00000269305.4:c.712T>C	p.Cys238Arg	p.C238R	ENST00000269305	NM_001126112.2	238	Tgt/Cgt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123217380	123217380	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	220	521	0	ENST00000218089.9:c.3034C>T	p.Arg1012Ter	p.R1012*	ENST00000218089	NM_001042749.1	1012	Cga/Tga																																																																															
SETD8	387893	MSKCC	GRCh37	12	123874011	123874013	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs780061449		P-0026421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	16	93	1	ENST00000330479.4:c.62_64del	p.Ala21del	p.A21del	ENST00000330479	NM_020382.3	14	gaGGCg/gag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88726698	88726698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	315	478	2	ENST00000360948.2:c.346C>T	p.Arg116Trp	p.R116W	ENST00000360948	NM_001012338.2	116	Cgg/Tgg																																																																															
ATRX	546	MSKCC	GRCh37	X	76972621	76972621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	85	561	0	ENST00000373344.5:c.120G>A	p.Met40Ile	p.M40I	ENST00000373344	NM_000489.3	40	atG/atA																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993398	72993398	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200201291		P-0026421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	257	726	0	ENST00000268489.5:c.647C>T	p.Pro216Leu	p.P216L	ENST00000268489	NM_006885.3	216	cCg/cTg																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981854	101981854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	313	745	0	ENST00000282441.5:c.275C>T	p.Pro92Leu	p.P92L	ENST00000282441	NM_001130145.2	92	cCc/cTc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95596500	95596500	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	308	366	1	ENST00000343455.3:c.468G>T	p.Leu156Phe	p.L156F	ENST00000343455	NM_177438.2	156	ttG/ttT																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778369	3778369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	102	490	0	ENST00000262367.5:c.6679G>A	p.Gly2227Arg	p.G2227R	ENST00000262367	NM_004380.2	2227	Ggg/Agg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216602	7216602	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	367	479	0	ENST00000380728.2:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000380728		245	Cag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144180	11144180	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	78	653	0	ENST00000344626.4:c.3761A>C	p.Glu1254Ala	p.E1254A	ENST00000344626	NM_003072.3	1254	gAg/gCg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39250090	39250090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	238	623	0	ENST00000402219.2:c.1479G>T	p.Lys493Asn	p.K493N	ENST00000402219	NM_005633.3	493	aaG/aaT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117674266	117674266	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	155	656	0	ENST00000368508.3:c.4208A>G	p.Asp1403Gly	p.D1403G	ENST00000368508	NM_002944.2	1403	gAc/gGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151917702	151917702	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	49	246	0	ENST00000262189.6:c.3618G>C	p.Leu1206Phe	p.L1206F	ENST00000262189	NM_170606.2	1206	ttG/ttC																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128419946	128419946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1432	84	623	0	ENST00000265960.3:c.482C>A	p.Ser161Tyr	p.S161Y	ENST00000265960	NM_001006617.1	161	tCc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0026425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	469	770	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98238356	98238356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	61	559	0	ENST00000331920.6:c.1688C>T	p.Ala563Val	p.A563V	ENST00000331920	NM_000264.3	563	gCg/gTg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190738292	190738293	+	missense_variant	Missense_Mutation	DNP	AG	AG	TT			P-0026425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	62	473	0	ENST00000441310.2:c.2544_2545delinsTT	p.Asp849Tyr	p.D849Y	ENST00000441310	NM_000534.4	848	gcAGat/gcTTat																																																																															
APC	324	MSKCC	GRCh37	5	112174891	112174891	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	265	397	0	ENST00000257430.4:c.3601del	p.Ser1201HisfsTer64	p.S1201Hfs*64	ENST00000257430	NM_000038.5	1200	agT/ag																																																																															
PARK2	5071	MSKCC	GRCh37	6	161771151	161771151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	149	743	0	ENST00000366898.1:c.1378G>T	p.Asp460Tyr	p.D460Y	ENST00000366898	NM_004562.2	460	Gac/Tac																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106519968	106519968	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	89	291	0	ENST00000359195.3:c.2400del	p.Lys800AsnfsTer4	p.K800Nfs*4	ENST00000359195	NM_002649.2	799	gAa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	564	720	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39325171	39325171	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	345	666	0	ENST00000373001.3:c.148G>T	p.Gly50Cys	p.G50C	ENST00000373001	NM_022157.3	50	Ggt/Tgt																																																																															
RB1	5925	MSKCC	GRCh37	13	48937081	48937081	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0026431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	378	329	1	ENST00000267163.4:c.849T>A	p.Cys283Ter	p.C283*	ENST00000267163	NM_000321.2	283	tgT/tgA																																																																															
CIC	23152	MSKCC	GRCh37	19	42796554	42796554	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	395	703	0	ENST00000575354.2:c.3111del	p.Val1038Ter	p.V1038*	ENST00000575354	NM_015125.3	1037	tcT/tc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	19	169	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	316	531	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	250	309	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	337	373	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023449	27023449	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	42	570	0	ENST00000324856.7:c.555G>C	p.Gln185His	p.Q185H	ENST00000324856	NM_006015.4	185	caG/caC																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518244	204518244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	40	260	0	ENST00000367182.3:c.907G>A	p.Glu303Lys	p.E303K	ENST00000367182	NM_001278516.1	303	Gag/Aag																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128051250	128051250	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	194	413	0	ENST00000285398.2:c.73G>C	p.Asp25His	p.D25H	ENST00000285398	NM_000122.1	25	Gat/Cat																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940456	49940456	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	309	735	1	ENST00000296474.3:c.587A>G	p.Tyr196Cys	p.Y196C	ENST00000296474	NM_002447.2	196	tAt/tGt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143352367	143352367	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	44	360	0	ENST00000262992.4:c.46C>G	p.Leu16Val	p.L16V	ENST00000262992	NM_001101669.1	16	Ctt/Gtt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685281	89685281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	23	150	0	ENST00000371953.3:c.176C>G	p.Ser59Ter	p.S59*	ENST00000371953	NM_000314.4	59	tCa/tGa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89712015	89712015	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	88	118	0	ENST00000371953.3:c.633C>A	p.Cys211Ter	p.C211*	ENST00000371953	NM_000314.4	211	tgC/tgA																																																																															
ATM	472	MSKCC	GRCh37	11	108143509	108143509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	95	486	0	ENST00000278616.4:c.3214G>A	p.Glu1072Lys	p.E1072K	ENST00000278616	NM_000051.3	1072	Gaa/Aaa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435419	18435419	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	60	353	0	ENST00000266497.5:c.404G>C	p.Gly135Ala	p.G135A	ENST00000266497		135	gGt/gCt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32915168	32915168	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	738	787	0	ENST00000380152.3:c.6676G>C	p.Glu2226Gln	p.E2226Q	ENST00000380152		2226	Gaa/Caa																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24143174	24143174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	42	457	0	ENST00000263121.7:c.406C>T	p.Pro136Ser	p.P136S	ENST00000263121	NM_003073.3	136	Ccc/Tcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	34	331	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	341	432	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566711	212566711	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	161	493	0	ENST00000342788.4:c.1470C>G	p.Asn490Lys	p.N490K	ENST00000342788	NM_005235.2	490	aaC/aaG																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189442	56189442	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	137	566	0	ENST00000399503.3:c.4474C>T	p.Gln1492Ter	p.Q1492*	ENST00000399503	NM_005921.1	1492	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	293	368	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0005997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	280	458	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069931	5069931	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	93	262	0	ENST00000381652.3:c.1520C>G	p.Ser507Ter	p.S507*	ENST00000381652	NM_004972.3	507	tCa/tGa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604836	48604836	+	stop_lost	Nonstop_Mutation	SNP	G	G	T			P-0005997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	114	311	1	ENST00000342988.3:c.1658G>T	p.Ter553LeuextTer40	p.*553Lext*40	ENST00000342988	NM_005359.5	553	tGa/tTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0008909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	127	384	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578407	7578412	+	protein_altering_variant	In_Frame_Del	DEL	GCCTCA	GCCTCA	CCC			P-0008909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	117	278	0	ENST00000269305.4:c.518_523delinsGGG	p.Val173_Arg175delinsGlyGly	p.V173_R175delinsGG	ENST00000269305	NM_001126112.2	173	gTGAGGCgc/gGGGgc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46254583	46254583	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0026164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	141	340	0	ENST00000334344.6:c.4774-1G>A		p.X1592_splice	ENST00000334344	NM_152641.2	1592																																																																																
NTRK1	4914	MSKCC	GRCh37	1	156846235	156846235	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201564883		P-0026164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	110	564	0	ENST00000524377.1:c.1676G>A	p.Arg559His	p.R559H	ENST00000524377	NM_002529.3	559	cGt/cAt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61709597	61709597	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	121	310	0	ENST00000401558.2:c.2890C>G	p.Pro964Ala	p.P964A	ENST00000401558	NM_003400.3	964	Cct/Gct																																																																															
TET2	54790	MSKCC	GRCh37	4	106155275	106155275	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	53	338	1	ENST00000380013.4:c.176G>C	p.Ser59Thr	p.S59T	ENST00000380013	NM_001127208.2	59	aGt/aCt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600369	10600369	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	380	760	0	ENST00000171111.5:c.1486G>T	p.Glu496Ter	p.E496*	ENST00000171111	NM_203500.1	496	Gag/Tag																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101867538	101867546	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	12	20	0	ENST00000374994.4:c.70_78delGCGGCGGCG	p.Ala24_Ala26del	p.A24_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCGGCg/ctg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576183	88576183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	148	578	0	ENST00000360948.2:c.1490G>T	p.Gly497Val	p.G497V	ENST00000360948	NM_001012338.2	497	gGg/gTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140481412	140481412	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	124	449	0	ENST00000288602.6:c.1396G>C	p.Gly466Arg	p.G466R	ENST00000288602	NM_004333.4	466	Gga/Cga																																																																															
RET	5979	MSKCC	GRCh37	10	43606895	43606895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	193	812	1	ENST00000355710.3:c.1504G>A	p.Val502Ile	p.V502I	ENST00000355710	NM_020975.4	502	Gta/Ata																																																																															
IGF2	3481	MSKCC	GRCh37	11	2156691	2156691	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	150	686	0	ENST00000434045.2:c.231C>G	p.Cys77Trp	p.C77W	ENST00000434045	NM_001127598.1	77	tgC/tgG																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18691123	18691123	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	93	441	0	ENST00000266497.5:c.3234G>T	p.Met1078Ile	p.M1078I	ENST00000266497		1078	atG/atT																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244311	46244311	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	96	406	0	ENST00000334344.6:c.2405T>G	p.Phe802Cys	p.F802C	ENST00000334344	NM_152641.2	802	tTt/tGt																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7984200	7984203	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ACTC	ACTC	-			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	118	495	0	ENST00000319144.4:c.526_527+2del		p.X176_splice	ENST00000319144	NM_001139.2	176																																																																																
STK11	6794	MSKCC	GRCh37	19	1206976	1206979	+	frameshift_variant	Frame_Shift_Del	DEL	ATGG	ATGG	-			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	303	548	0	ENST00000326873.7:c.65_68del	p.Met22ThrfsTer28	p.M22Tfs*28	ENST00000326873	NM_000455.4	22	ATGGac/ac																																																																															
MSH2	4436	MSKCC	GRCh37	2	47643565	47643565	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	90	449	0	ENST00000233146.2:c.1073A>G	p.Glu358Gly	p.E358G	ENST00000233146	NM_000251.2	358	gAg/gGg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719484	190719484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	63	321	0	ENST00000441310.2:c.1486G>A	p.Asp496Asn	p.D496N	ENST00000441310	NM_000534.4	496	Gat/Aat																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048758	180048758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	190	653	1	ENST00000261937.6:c.1804C>T	p.His602Tyr	p.H602Y	ENST00000261937	NM_182925.4	602	Cac/Tac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460552	8460552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	111	407	0	ENST00000356435.5:c.3734C>A	p.Pro1245His	p.P1245H	ENST00000356435		1245	cCt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0026170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	255	421	1	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602800	10602800	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	704	621	1	ENST00000171111.5:c.778C>T	p.Arg260Ter	p.R260*	ENST00000171111	NM_203500.1	260	Cga/Tga																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865281	57865282	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0026170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	436	511	2	ENST00000228682.2:c.2758_2759delinsTT	p.Ala920Phe	p.A920F	ENST00000228682	NM_005269.2	920	GCc/TTc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243728	41243729	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0026170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	273	485	0	ENST00000357654.3:c.3819_3820delinsTT	p.Gln1273_Val1274delinsHisLeu	p.Q1273_V1274delinsHL	ENST00000357654	NM_007294.3	1273	caGGta/caTTta																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22162014	22162014	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	337	473	0	ENST00000215832.6:c.241G>C	p.Glu81Gln	p.E81Q	ENST00000215832	NM_002745.4	81	Gag/Cag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865281	57865281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	436	509	0	ENST00000228682.2:c.2758G>T	p.Ala920Ser	p.A920S	ENST00000228682	NM_005269.2	920	Gcc/Tcc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572662	64572662	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	ATG			P-0026170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	401	452	0	ENST00000337652.1:c.1209delinsCAT	p.Gln403HisfsTer48	p.Q403Hfs*48	ENST00000337652	NM_130803.2	403	caG/caCAT																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196119	138196119	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	33	313	1	ENST00000237289.4:c.433G>T	p.Glu145Ter	p.E145*	ENST00000237289	NM_001270507.1	145	Gag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32950807	32950807	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0026171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	48	335	0	ENST00000380152.3:c.8636del	p.Asn2879ThrfsTer12	p.N2879Tfs*12	ENST00000380152		2878	gAa/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928036	178928037	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGAAAAATGGCTTTGAATCTTTGGCCAGTACCTCATGGATTAGAA			P-0026171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	46	481	0	ENST00000263967.3:c.1316_1360dup	p.Gly439_Glu453dup	p.G439_E453dup	ENST00000263967	NM_006218.2	439	-/GGAAAAATGGCTTTGAATCTTTGGCCAGTACCTCATGGATTAGAA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0026174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	223	768	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
NF1	4763	MSKCC	GRCh37	17	29576105	29576105	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	142	523	0	ENST00000358273.4:c.4078C>T	p.Gln1360Ter	p.Q1360*	ENST00000358273	NM_001042492.2	1360	Caa/Taa																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52724315	52724315	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	61	537	0	ENST00000322088.6:c.1447A>T	p.Ile483Phe	p.I483F	ENST00000322088	NM_014225.5	483	Atc/Ttc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713548	30713548	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	118	401	0	ENST00000359013.4:c.948G>T	p.Lys316Asn	p.K316N	ENST00000359013	NM_001024847.2	316	aaG/aaT																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515172	31515172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	139	688	1	ENST00000344624.3:c.1213G>A	p.Glu405Lys	p.E405K	ENST00000344624		405	Gaa/Aaa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86658451	86658452	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	35	296	0	ENST00000274376.6:c.1421dup	p.Asn474LysfsTer4	p.N474Kfs*4	ENST00000274376	NM_002890.2	472	-/A																																																																															
PREX2	80243	MSKCC	GRCh37	8	68982092	68982092	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	27	772	0	ENST00000288368.4:c.1466T>C	p.Leu489Pro	p.L489P	ENST00000288368	NM_024870.2	489	cTt/cCt																																																																															
MED12	9968	MSKCC	GRCh37	X	70357730	70357730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	125	341	0	ENST00000374080.3:c.5981G>T	p.Arg1994Leu	p.R1994L	ENST00000374080		1994	cGg/cTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76763935	76763935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	76	237	0	ENST00000373344.5:c.7373G>A	p.Gly2458Glu	p.G2458E	ENST00000373344	NM_000489.3	2458	gGa/gAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	161	583	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0026272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	62	677	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928065	178928076	+	inframe_deletion	In_Frame_Del	DEL	TACCTCATGGAT	TACCTCATGGAT	-			P-0026272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	66	653	1	ENST00000263967.3:c.1345_1356del	p.Pro449_Leu452del	p.P449_L452del	ENST00000263967	NM_006218.2	448	gTACCTCATGGATta/gta																																																																															
FAT1	2195	MSKCC	GRCh37	4	187535354	187535354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	33	467	2	ENST00000441802.2:c.9220C>T	p.Pro3074Ser	p.P3074S	ENST00000441802	NM_005245.3	3074	Cca/Tca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187535413	187535413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	54	523	1	ENST00000441802.2:c.9161C>T	p.Ser3054Phe	p.S3054F	ENST00000441802	NM_005245.3	3054	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	63	514	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0026273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	17	580	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
GNAS	2778	MSKCC	GRCh37	20	57480507	57480507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	18	438	0	ENST00000371085.3:c.502G>A	p.Glu168Lys	p.E168K	ENST00000371085	NM_000516.4	168	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0026276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	73	606	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202846	16202846	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	50	554	1	ENST00000375759.3:c.554C>A	p.Ala185Asp	p.A185D	ENST00000375759	NM_015001.2	185	gCt/gAt																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	146	538	1	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40384097	40384097	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	96	705	0	ENST00000293328.3:c.49C>T	p.Gln17Ter	p.Q17*	ENST00000293328	NM_012448.3	17	Cag/Tag																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182662947	182662947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	76	463	0	ENST00000292782.4:c.715C>T	p.Leu239Phe	p.L239F	ENST00000292782	NM_020640.2	239	Ctt/Ttt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0026353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	47	301	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43714131	43714131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	86	458	0	ENST00000382044.4:c.4022C>T	p.Pro1341Leu	p.P1341L	ENST00000382044	NM_001141980.1	1341	cCa/cTa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61724108	61724109	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0026353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	41	263	0	ENST00000401558.2:c.793_794del	p.Leu265GlufsTer5	p.L265Efs*5	ENST00000401558	NM_003400.3	265	CTg/g																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519972		P-0026355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	124	311	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																															
BLM	641	MSKCC	GRCh37	15	91341543	91341543	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	103	348	0	ENST00000355112.3:c.3334A>C	p.Asn1112His	p.N1112H	ENST00000355112	NM_000057.2	1112	Aat/Cat																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563192	21563192	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	118	793	0	ENST00000382592.4:c.727G>C	p.Gly243Arg	p.G243R	ENST00000382592	NM_014572.2	243	Ggg/Cgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0026398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	268	758	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175057	112175057	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	113	303	0	ENST00000257430.4:c.3766C>T	p.Gln1256Ter	p.Q1256*	ENST00000257430	NM_000038.5	1256	Caa/Taa																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975444	13975444	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	258	511	0	ENST00000405192.2:c.443T>C	p.Leu148Pro	p.L148P	ENST00000405192	NM_001163147.1	148	cTg/cCg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729609	41729609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	288	613	1	ENST00000242208.4:c.920G>A	p.Arg307Gln	p.R307Q	ENST00000242208	NM_002192.2	307	cGg/cAg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	162	775	0	ENST00000347630.2:c.397T>C	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	Ttc/Ctc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821485	32821485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	97	762	1	ENST00000354258.4:c.109C>T	p.Arg37Trp	p.R37W	ENST00000354258	NM_000593.5	37	Cgg/Tgg																																																																															
MYC	4609	MSKCC	GRCh37	8	128752989	128752989	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	121	549	0	ENST00000377970.2:c.1150G>C	p.Glu384Gln	p.E384Q	ENST00000377970	NM_002467.4	384	Gag/Cag																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87325623	87325623	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs76950094		P-0026442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	233	578	1	ENST00000277120.3:c.500C>A	p.Ser167Tyr	p.S167Y	ENST00000277120		167	tCc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578175	7578175	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0026442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	401	807	0	ENST00000269305.4:c.672+2T>G		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
AKT1	207	MSKCC	GRCh37	14	105243045	105243046	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTGCAGGCAGCGGATGATGAAGGTGTTGGGCCGGGGCCG			P-0026442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	195	775	3	ENST00000349310.3:c.199_237dup	p.Arg67_Gln79dup	p.R67_Q79dup	ENST00000349310	NM_001014432.1	67	-/CGGCCCCGGCCCAACACCTTCATCATCCGCTGCCTGCAG																																																																															
ERF	2077	MSKCC	GRCh37	19	42753697	42753698	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0026442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	1080	866	1	ENST00000222329.4:c.566_567del	p.Cys189Ter	p.C189*	ENST00000222329	NM_006494.2	189	tGT/t																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0026443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	20	608	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
RET	5979	MSKCC	GRCh37	10	43604502	43604502	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	24	688	0	ENST00000355710.3:c.1087T>G	p.Ser363Ala	p.S363A	ENST00000355710	NM_020975.4	363	Tcc/Gcc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632419	3632419	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	25	792	0	ENST00000294008.3:c.5429C>G	p.Thr1810Ser	p.T1810S	ENST00000294008	NM_032444.2	1810	aCt/aGt																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225674	26225674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	30	593	0	ENST00000360408.1:c.292G>A	p.Glu98Lys	p.E98K	ENST00000360408	NM_003532.2	98	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	663	688	1	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916928	178916939	+	inframe_deletion	In_Frame_Del	DEL	AGGCAACCGTGA	AGGCAACCGTGA	-			P-0026447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	140	535	0	ENST00000263967.3:c.317_328del	p.Gly106_Glu109del	p.G106_E109del	ENST00000263967	NM_006218.2	105	gtAGGCAACCGTGAa/gta																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720813	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0026447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	98	264	0	ENST00000371953.3:c.967_968del	p.Asn323Ter	p.N323*	ENST00000371953	NM_000314.4	321	acAAaa/acaa																																																																															
APC	324	MSKCC	GRCh37	5	112175888	112175895	+	frameshift_variant	Frame_Shift_Del	DEL	AATGGGAA	AATGGGAA	-			P-0026447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	213	326	0	ENST00000257430.4:c.4597_4604del	p.Asn1533Ter	p.N1533*	ENST00000257430	NM_000038.5	1533	AATGGGAAt/t																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53240995	53240995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	213	285	0	ENST00000375401.3:c.1216G>A	p.Ala406Thr	p.A406T	ENST00000375401	NM_004187.3	406	Gct/Act																																																																															
JAK1	3716	MSKCC	GRCh37	1	65344774	65344774	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	91	460	2	ENST00000342505.4:c.263G>A	p.Trp88Ter	p.W88*	ENST00000342505	NM_002227.2	88	tGg/tAg																																																																															
CBL	867	MSKCC	GRCh37	11	119155779	119155779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	102	646	0	ENST00000264033.4:c.1532C>T	p.Ser511Leu	p.S511L	ENST00000264033	NM_005188.3	511	tCa/tTa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28896403	28896403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	80	398	0	ENST00000282397.4:c.3047G>A	p.Arg1016Lys	p.R1016K	ENST00000282397	NM_002019.4	1016	aGa/aAa																																																																															
RB1	5925	MSKCC	GRCh37	13	48941654	48941654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	56	266	0	ENST00000267163.4:c.964G>A	p.Glu322Lys	p.E322K	ENST00000267163	NM_000321.2	322	Gaa/Aaa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95571448	95571448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	64	334	0	ENST00000343455.3:c.3229G>A	p.Asp1077Asn	p.D1077N	ENST00000343455	NM_177438.2	1077	Gat/Aat																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799155	88799155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	77	500	0	ENST00000360948.2:c.230C>T	p.Ser77Leu	p.S77L	ENST00000360948	NM_001012338.2	77	tCa/tTa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639021	3639021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	93	530	1	ENST00000294008.3:c.4618G>A	p.Glu1540Lys	p.E1540K	ENST00000294008	NM_032444.2	1540	Gaa/Aaa																																																																															
NF1	4763	MSKCC	GRCh37	17	29509666	29509666	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	92	581	0	ENST00000358273.4:c.871G>T	p.Glu291Ter	p.E291*	ENST00000358273	NM_001042492.2	291	Gaa/Taa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763458	59763458	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	95	549	0	ENST00000259008.2:c.2644G>C	p.Ala882Pro	p.A882P	ENST00000259008	NM_032043.2	882	Gct/Cct																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	78	436	0	ENST00000342988.3:c.988G>C	p.Glu330Gln	p.E330Q	ENST00000342988	NM_005359.5	330	Gaa/Caa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591865	48591865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	21	491	1	ENST00000342988.3:c.1028C>T	p.Ser343Leu	p.S343L	ENST00000342988	NM_005359.5	343	tCa/tTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1223087	1223087	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	134	679	0	ENST00000326873.7:c.1024G>T	p.Glu342Ter	p.E342*	ENST00000326873	NM_000455.4	342	Gag/Tag																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615783	1615783	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	96	620	0	ENST00000344749.5:c.1488G>C	p.Glu496Asp	p.E496D	ENST00000344749	NM_001136139.2	496	gaG/gaC																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597373	10597373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	144	692	0	ENST00000171111.5:c.1830G>A	p.Met610Ile	p.M610I	ENST00000171111	NM_203500.1	610	atG/atA																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18272134	18272134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	16	66	0	ENST00000222254.8:c.644C>T	p.Pro215Leu	p.P215L	ENST00000222254	NM_005027.3	215	cCg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733274	40733274	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	92	596	0	ENST00000373198.4:c.3532C>G	p.Leu1178Val	p.L1178V	ENST00000373198	NM_133170.3	1178	Ctc/Gtc																																																																															
VHL	7428	MSKCC	GRCh37	3	10191563	10191563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	100	519	0	ENST00000256474.2:c.556G>A	p.Glu186Lys	p.E186K	ENST00000256474	NM_000551.3	186	Gaa/Aaa																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645786	12645786	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	140	465	0	ENST00000251849.4:c.683C>T	p.Ser228Phe	p.S228F	ENST00000251849	NM_002880.3	228	tCt/tTt																																																																															
KDR	3791	MSKCC	GRCh37	4	55948801	55948801	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	66	307	1	ENST00000263923.4:c.3664C>T	p.Gln1222Ter	p.Q1222*	ENST00000263923	NM_002253.2	1222	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541457	187541457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	89	500	1	ENST00000441802.2:c.6283G>A	p.Glu2095Lys	p.E2095K	ENST00000441802	NM_005245.3	2095	Gag/Aag																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39074433	39074433	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	80	486	1	ENST00000357387.3:c.47G>A	p.Arg16Gln	p.R16Q	ENST00000357387	NM_152756.3	16	cGa/cAa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79961069	79961069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	100	527	0	ENST00000265081.6:c.466C>G	p.Leu156Val	p.L156V	ENST00000265081	NM_002439.4	156	Ctg/Gtg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853329	151853329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	77	449	0	ENST00000262189.6:c.11773G>A	p.Glu3925Lys	p.E3925K	ENST00000262189	NM_170606.2	3925	Gaa/Aaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69002860	69002860	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	79	348	0	ENST00000288368.4:c.2160C>G	p.Ile720Met	p.I720M	ENST00000288368	NM_024870.2	720	atC/atG																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127920583	127920583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	119	579	1	ENST00000373547.4:c.316C>T	p.Arg106Cys	p.R106C	ENST00000373547	NM_002721.4	106	Cgt/Tgt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410556	63410556	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	110	643	1	ENST00000330258.3:c.2611C>T	p.Arg871Ter	p.R871*	ENST00000330258	NM_152424.3	871	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	224	575	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0026473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	343	679	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0026473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	238	431	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0026473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	122	410	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112154771	112154771	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	160	458	3	ENST00000257430.4:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000257430	NM_000038.5	348	Cga/Tga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038756	47038756	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	128	634	1	ENST00000329236.7:c.532C>T	p.Gln178Ter	p.Q178*	ENST00000329236	NM_001204466.1	178	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692802	89692802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	150	290	0	ENST00000371953.3:c.286C>A	p.Pro96Thr	p.P96T	ENST00000371953	NM_000314.4	96	Cca/Aca																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479807	67479807	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	113	533	1	ENST00000327367.4:c.1114A>T	p.Ile372Phe	p.I372F	ENST00000327367	NM_005902.3	372	Atc/Ttc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522720	67522721	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0026473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	214	305	1	ENST00000274335.5:c.218dup	p.Tyr73Ter	p.Y73*	ENST00000274335		73	tac/tAac																																																																															
CBFB	865	MSKCC	GRCh37	16	67063389	67063389	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0026475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	331	476	2	ENST00000412916.2:c.78+1G>A		p.X26_splice	ENST00000412916		26																																																																																
GATA3	2625	MSKCC	GRCh37	10	8115722	8115723	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	288	517	0	ENST00000346208.3:c.1070dup	p.Lys358GlufsTer13	p.K358Efs*13	ENST00000346208		356	-/A																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933833	39933833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	288	796	1	ENST00000378444.4:c.766C>T	p.His256Tyr	p.H256Y	ENST00000378444	NM_001123385.1	256	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	203	684	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158464	26158464	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	174	621	0	ENST00000289316.2:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000289316	NM_138720.2	23	Cag/Tag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468219	120468219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	116	664	0	ENST00000256646.2:c.4220C>T	p.Ser1407Leu	p.S1407L	ENST00000256646	NM_024408.3	1407	tCg/tTg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115262275	115262275	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	186	594	0	ENST00000438362.2:c.2279G>T	p.Gly760Val	p.G760V	ENST00000438362	NM_001242891.1	760	gGa/gTa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230646	46230646	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	141	463	2	ENST00000334344.6:c.895G>T	p.Glu299Ter	p.E299*	ENST00000334344	NM_152641.2	299	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49422666	49422666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	197	720	1	ENST00000301067.7:c.14327del	p.Lys4776ArgfsTer21	p.K4776Rfs*21	ENST00000301067	NM_003482.3	4776	aAg/ag																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112884188	112884188	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	184	597	0	ENST00000351677.2:c.123C>G	p.Phe41Leu	p.F41L	ENST00000351677	NM_002834.3	41	ttC/ttG																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134825430	134825430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	169	523	2	ENST00000398015.3:c.946G>A	p.Glu316Lys	p.E316K	ENST00000398015	NM_004441.4	316	Gaa/Aaa																																																																															
E2F3	1871	MSKCC	GRCh37	6	20483135	20483135	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	134	430	0	ENST00000346618.3:c.868G>C	p.Asp290His	p.D290H	ENST00000346618	NM_001949.4	290	Gat/Cat																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683595	162683595	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	118	461	0	ENST00000366898.1:c.374C>A	p.Thr125Asn	p.T125N	ENST00000366898	NM_004562.2	125	aCt/aAt																																																																															
XIAP	331	MSKCC	GRCh37	X	123034436	123034436	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	53	591	0	ENST00000355640.3:c.1193A>G	p.Gln398Arg	p.Q398R	ENST00000355640		398	cAg/cGg																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152864447	152864447	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	34	176	0	ENST00000406277.2:c.79C>G	p.Arg27Gly	p.R27G	ENST00000406277	NM_152274.4	27	Cga/Gga																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0026477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	143	654	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0026477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	252	433	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	58	522	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	81	277	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	108	440	2	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	77	333	1	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	69	417	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	109	460	3	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
B2M	567	MSKCC	GRCh37	15	45007834	45007834	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	66	455	0	ENST00000558401.1:c.285delA	p.Asp96MetfsTer7	p.D96Mfs*7	ENST00000558401	NM_004048.2	94	gAa/ga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	27	146	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	255	689	2	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	199	647	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022443	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	59	232	0	ENST00000375687.4:c.1933_1934del	p.Gly645TrpfsTer12	p.G645Wfs*12	ENST00000375687	NM_015338.5	643	GGg/g																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088788	27088788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	135	519	0	ENST00000324856.7:c.2402del	p.Gly801ValfsTer32	p.G801Vfs*32	ENST00000324856	NM_006015.4	799	caG/ca																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354008	15354008	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	39	193	3	ENST00000263377.2:c.2872del	p.Leu958CysfsTer110	p.L958Cfs*110	ENST00000263377	NM_058243.2	958	Ctg/tg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724626	162724626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	128	435	0	ENST00000367921.3:c.398G>A	p.Arg133Gln	p.R133Q	ENST00000367921	NM_006182.2	133	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023769	27023769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	66	415	0	ENST00000324856.7:c.879del	p.Thr294ProfsTer69	p.T294Pfs*69	ENST00000324856	NM_006015.4	292	aCc/ac																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	159	548	0	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964077	28964077	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	41	439	0	ENST00000282397.4:c.1825del	p.Met609TrpfsTer16	p.M609Wfs*16	ENST00000282397	NM_002019.4	609	Atg/tg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781141	135781141	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	137	550	2	ENST00000298552.3:c.1824del	p.Phe608LeufsTer21	p.F608Lfs*21	ENST00000298552	NM_001162426.1	608	ttT/tt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690848	89690848	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	36	351	0	ENST00000371953.3:c.253+2T>C		p.X85_splice	ENST00000371953	NM_000314.4	85																																																																																
CASP8	841	MSKCC	GRCh37	2	202149634	202149635	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	114	466	0	ENST00000358485.4:c.1077dup	p.Leu360ThrfsTer6	p.L360Tfs*6	ENST00000358485	NM_001080125.1	359	caa/cAaa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	34	50	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
MYC	4609	MSKCC	GRCh37	8	128750681	128750681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	165	547	0	ENST00000377970.2:c.218C>T	p.Thr73Ile	p.T73I	ENST00000377970	NM_002467.4	73	aCc/aTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412266	139412266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	247	679	0	ENST00000277541.6:c.1379C>T	p.Pro460Leu	p.P460L	ENST00000277541	NM_017617.3	460	cCg/cTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212403	5212403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	169	685	3	ENST00000357368.4:c.4714C>T	p.Arg1572Trp	p.R1572W	ENST00000357368	NM_002850.3	1572	Cgg/Tgg																																																																															
TET2	54790	MSKCC	GRCh37	4	106156729	106156729	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	199	400	1	ENST00000380013.4:c.1630C>T	p.Arg544Ter	p.R544*	ENST00000380013	NM_001127208.2	544	Cga/Tga																																																																															
ATR	545	MSKCC	GRCh37	3	142204114	142204114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	57	521	1	ENST00000350721.4:c.6089C>T	p.Ala2030Val	p.A2030V	ENST00000350721	NM_001184.3	2030	gCg/gTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830204	72830204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	79	381	0	ENST00000268489.5:c.6377C>T	p.Ala2126Val	p.A2126V	ENST00000268489	NM_006885.3	2126	gCg/gTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10270726	10270726	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	157	491	2	ENST00000340748.4:c.1009del	p.Met337TrpfsTer8	p.M337Wfs*8	ENST00000340748		337	Atg/tg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	61	332	2	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	62	414	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	195	666	2	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	324	645	4	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434972	110434973	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	198	662	2	ENST00000375856.3:c.3428dup	p.Arg1144ProfsTer181	p.R1144Pfs*181	ENST00000375856	NM_003749.2	1143	ggc/ggGc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37680930	37680930	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	46	343	0	ENST00000447079.4:c.3103delC	p.His1035ThrfsTer22	p.H1035Tfs*22	ENST00000447079	NM_015083.1	1033	ctC/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7573966	7573966	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	95	643	0	ENST00000269305.4:c.1061A>G	p.Gln354Arg	p.Q354R	ENST00000269305	NM_001126112.2	354	cAg/cGg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214728	36214728	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	77	402	1	ENST00000222270.7:c.3159del	p.Arg1055GlyfsTer127	p.R1055Gfs*127	ENST00000222270	NM_014727.1	1052	Ggg/gg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030582	47030582	+	intron_variant	Intron	SNP	G	G	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	165	311	4	ENST00000329236.7:c.201+1685G>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
PBRM1	55193	MSKCC	GRCh37	3	52620657	52620657	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	92	393	0	ENST00000394830.3:c.3096del	p.Phe1032LeufsTer102	p.F1032Lfs*102	ENST00000394830	NM_018313.4	1032	ttT/tt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717719	89717720	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	133	404	0	ENST00000371953.3:c.750_751del	p.Cys250TrpfsTer2	p.C250Wfs*2	ENST00000371953	NM_000314.4	248	ccTGtg/cctg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778549	3778549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	203	597	0	ENST00000262367.5:c.6499del	p.Gln2167ArgfsTer5	p.Q2167Rfs*5	ENST00000262367	NM_004380.2	2167	Cag/ag																																																																															
PGR	5241	MSKCC	GRCh37	11	100998275	100998275	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	52	226	0	ENST00000325455.5:c.1527del	p.Ala510ArgfsTer36	p.A510Rfs*36	ENST00000325455	NM_001202474.3	509	ccC/cc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602745	10602745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1173	92	663	2	ENST00000171111.5:c.833C>T	p.Pro278Leu	p.P278L	ENST00000171111	NM_203500.1	278	cCg/cTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11294297	11294297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	163	524	0	ENST00000361445.4:c.2234G>T	p.Gly745Val	p.G745V	ENST00000361445	NM_004958.3	745	gGg/gTg																																																																															
ID3	3399	MSKCC	GRCh37	1	23885719	23885719	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	158	546	0	ENST00000374561.5:c.199G>C	p.Val67Leu	p.V67L	ENST00000374561	NM_002167.4	67	Gtg/Ctg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256455	115256455	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	143	484	0	ENST00000369535.4:c.256A>G	p.Asn86Asp	p.N86D	ENST00000369535	NM_002524.4	86	Aat/Gat																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458973	120458973	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	97	622	0	ENST00000256646.2:c.6372G>T	p.Lys2124Asn	p.K2124N	ENST00000256646	NM_024408.3	2124	aaG/aaT																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176054993	176054993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	113	615	0	ENST00000367669.3:c.1060G>A	p.Ala354Thr	p.A354T	ENST00000367669	NM_022457.5	354	Gca/Aca																																																																															
AKT3	10000	MSKCC	GRCh37	1	243727061	243727061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	77	477	0	ENST00000263826.5:c.909G>A	p.Met303Ile	p.M303I	ENST00000263826	NM_005465.4	303	atG/atA																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852409	63852409	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	210	509	0	ENST00000279873.7:c.3191del	p.Gly1064AlafsTer43	p.G1064Afs*43	ENST00000279873	NM_032199.2	1063	Ggg/gg																																																																															
TET1	80312	MSKCC	GRCh37	10	70405601	70405601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	194	504	0	ENST00000373644.4:c.3115C>T	p.Pro1039Ser	p.P1039S	ENST00000373644	NM_030625.2	1039	Cca/Tca																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129438	64129438	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	198	671	3	ENST00000334205.4:c.874del	p.Ala292HisfsTer83	p.A292Hfs*83	ENST00000334205	NM_003942.2	290	caG/ca																																																																															
BIRC3	330	MSKCC	GRCh37	11	102201754	102201754	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	30	434	0	ENST00000263464.3:c.1106A>G	p.Asp369Gly	p.D369G	ENST00000263464	NM_001165.4	369	gAc/gGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431249	49431249	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	58	500	0	ENST00000301067.7:c.9890T>C	p.Leu3297Ser	p.L3297S	ENST00000301067	NM_003482.3	3297	tTg/tCg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28897047	28897047	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	44	418	3	ENST00000282397.4:c.2833del	p.Met945TrpfsTer13	p.M945Wfs*13	ENST00000282397	NM_002019.4	945	Atg/tg																																																																															
B2M	567	MSKCC	GRCh37	15	45007719	45007720	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	195	373	2	ENST00000558401.1:c.168dup	p.Val57SerfsTer2	p.V57Sfs*2	ENST00000558401	NM_004048.2	56	gaa/gAaa																																																																															
CD276	80381	MSKCC	GRCh37	15	73991987	73991987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	53	511	0	ENST00000318443.5:c.7C>T	p.Arg3Cys	p.R3C	ENST00000318443	NM_001024736.1	3	Cgt/Tgt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647641	3647641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	187	640	0	ENST00000294008.3:c.1422G>T	p.Gln474His	p.Q474H	ENST00000294008	NM_032444.2	474	caG/caT																																																																															
CDH1	999	MSKCC	GRCh37	16	68853329	68853329	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	49	515	0	ENST00000261769.5:c.1711+1G>A		p.X571_splice	ENST00000261769	NM_004360.3	571																																																																																
CDH1	999	MSKCC	GRCh37	16	68867346	68867347	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	258	449	0	ENST00000261769.5:c.2597dup	p.Asn867GlnfsTer8	p.N867Qfs*8	ENST00000261769	NM_004360.3	865	tgg/tGgg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881619	37881619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	190	613	1	ENST00000269571.5:c.2689C>T	p.Arg897Trp	p.R897W	ENST00000269571		897	Cgg/Tgg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40364151	40364151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	53	265	0	ENST00000293328.3:c.1531C>T	p.Leu511Phe	p.L511F	ENST00000293328	NM_012448.3	511	Ctc/Ttc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40864314	40864314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	50	468	0	ENST00000428826.2:c.1394G>A	p.Cys465Tyr	p.C465Y	ENST00000428826		465	tGc/tAc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243466	41243466	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	162	567	0	ENST00000357654.3:c.4082T>C	p.Met1361Thr	p.M1361T	ENST00000357654	NM_007294.3	1361	aTg/aCg																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56774173	56774173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	180	501	0	ENST00000337432.4:c.524C>T	p.Ala175Val	p.A175V	ENST00000337432	NM_058216.2	175	gCc/gTc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58677989	58677989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	65	224	0	ENST00000305921.3:c.214G>A	p.Ala72Thr	p.A72T	ENST00000305921	NM_003620.3	72	Gcc/Acc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39647427	39647427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	75	495	1	ENST00000262039.4:c.2599G>A	p.Val867Ile	p.V867I	ENST00000262039	NM_002647.2	867	Gtc/Atc																																																																															
STK11	6794	MSKCC	GRCh37	19	1223024	1223024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	166	612	0	ENST00000326873.7:c.961C>T	p.Pro321Ser	p.P321S	ENST00000326873	NM_000455.4	321	Ccc/Tcc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4117481	4117481	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142271248		P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	177	360	0	ENST00000262948.5:c.239C>T	p.Ala80Val	p.A80V	ENST00000262948	NM_030662.3	80	gCg/gTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231341	5231341	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	46	559	0	ENST00000357368.4:c.2135T>C	p.Val712Ala	p.V712A	ENST00000357368	NM_002850.3	712	gTc/gCc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349778	15349778	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199833114		P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	166	596	1	ENST00000263377.2:c.3796G>A	p.Glu1266Lys	p.E1266K	ENST00000263377	NM_058243.2	1266	Gag/Aag																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905182	50905182	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	223	707	0	ENST00000440232.2:c.463+1G>A		p.X155_splice	ENST00000440232	NM_002691.3	155																																																																																
SOS1	6654	MSKCC	GRCh37	2	39250173	39250173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	71	666	0	ENST00000402219.2:c.1396G>A	p.Gly466Ser	p.G466S	ENST00000402219	NM_005633.3	466	Ggc/Agc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46583903	46583903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	161	573	1	ENST00000263734.3:c.410C>A	p.Pro137His	p.P137H	ENST00000263734	NM_001430.4	137	cCc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385209	41385209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	53	587	0	ENST00000373198.4:c.752C>T	p.Thr251Ile	p.T251I	ENST00000373198	NM_133170.3	251	aCa/aTa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46281255	46281255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	136	433	0	ENST00000371998.3:c.4052C>A	p.Pro1351Gln	p.P1351Q	ENST00000371998		1351	cCg/cAg																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655328	45655328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1227	120	750	0	ENST00000407780.3:c.524C>T	p.Thr175Met	p.T175M	ENST00000407780	NM_001283052.1	175	aCg/aTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732946	30732946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	48	265	0	ENST00000359013.4:c.1634G>A	p.Cys545Tyr	p.C545Y	ENST00000359013	NM_001024847.2	545	tGc/tAc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37061907	37061907	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	364	409	0	ENST00000231790.2:c.991G>T	p.Glu331Ter	p.E331*	ENST00000231790	NM_000249.3	331	Gag/Tag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265882	41266241	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAG	CTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAG	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	10	25	0	ENST00000349496.5:c.14-132_241del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41267044	41267044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	54	412	0	ENST00000349496.5:c.715G>A	p.Ala239Thr	p.A239T	ENST00000349496	NM_001904.3	239	Gcc/Acc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119545639	119545639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	119	339	0	ENST00000316626.5:c.1298C>T	p.Thr433Ile	p.T433I	ENST00000316626		433	aCc/aTc																																																																															
ATR	545	MSKCC	GRCh37	3	142188297	142188297	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	121	494	0	ENST00000350721.4:c.6434T>C	p.Leu2145Ser	p.L2145S	ENST00000350721	NM_001184.3	2145	tTg/tCg																																																																															
ATR	545	MSKCC	GRCh37	3	142268428	142268431	+	frameshift_variant	Frame_Shift_Del	DEL	TTAA	TTAA	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	193	458	0	ENST00000350721.4:c.3061_3064del	p.Leu1021MetfsTer8	p.L1021Mfs*8	ENST00000350721	NM_001184.3	1021	TTAAat/at																																																																															
KDR	3791	MSKCC	GRCh37	4	55981462	55981462	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	42	453	0	ENST00000263923.4:c.475G>C	p.Val159Leu	p.V159L	ENST00000263923	NM_002253.2	159	Gtg/Ctg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332916	153332916	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	44	361	0	ENST00000281708.4:c.40C>T	p.Arg14Ter	p.R14*	ENST00000281708	NM_033632.3	14	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629828	187629828	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	298	647	1	ENST00000441802.2:c.1154C>A	p.Pro385His	p.P385H	ENST00000441802	NM_005245.3	385	cCt/cAt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161222	56161222	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	107	466	4	ENST00000399503.3:c.1091G>T	p.Arg364Leu	p.R364L	ENST00000399503	NM_005921.1	364	cGg/cTg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518025	176518025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	209	634	0	ENST00000292408.4:c.523G>A	p.Ala175Thr	p.A175T	ENST00000292408	NM_213647.1	175	Gca/Aca																																																																															
E2F3	1871	MSKCC	GRCh37	6	20486919	20486919	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	77	329	0	ENST00000346618.3:c.885-1C>T		p.X295_splice	ENST00000346618	NM_001949.4	295																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32163855	32163855	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	54	450	0	ENST00000375023.3:c.5371del	p.Ala1791GlnfsTer11	p.A1791Qfs*11	ENST00000375023	NM_004557.3	1791	Gca/ca																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32181578	32181578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	215	632	0	ENST00000375023.3:c.2207G>T	p.Gly736Val	p.G736V	ENST00000375023	NM_004557.3	736	gGg/gTg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026806	6026806	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	27	212	0	ENST00000265849.7:c.1590G>T	p.Gln530His	p.Q530H	ENST00000265849	NM_000535.5	530	caG/caT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508553	106508553	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	75	300	0	ENST00000359195.3:c.547C>A	p.Pro183Thr	p.P183T	ENST00000359195	NM_002649.2	183	Ccg/Acg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860135	151860135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	111	450	1	ENST00000262189.6:c.10527G>T	p.Gln3509His	p.Q3509H	ENST00000262189	NM_170606.2	3509	caG/caT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021821	69021821	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	170	606	0	ENST00000288368.4:c.3109C>G	p.Leu1037Val	p.L1037V	ENST00000288368	NM_024870.2	1037	Ctg/Gtg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69028026	69028026	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775893443		P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	73	519	0	ENST00000288368.4:c.3185G>A	p.Arg1062His	p.R1062H	ENST00000288368	NM_024870.2	1062	cGt/cAt																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80430544	80430544	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	112	551	0	ENST00000286548.4:c.464A>G	p.Asp155Gly	p.D155G	ENST00000286548	NM_002072.3	155	gAc/gGc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209369	98209369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	51	524	0	ENST00000331920.6:c.4169G>T	p.Gly1390Val	p.G1390V	ENST00000331920	NM_000264.3	1390	gGg/gTg																																																																															
AR	367	MSKCC	GRCh37	X	66905911	66905911	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	22	237	0	ENST00000374690.3:c.1832delA	p.Asn611IlefsTer15	p.N611Ifs*15	ENST00000374690	NM_000044.3	610	Aaa/aa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0025736-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			835	142	583	1	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341172	8341172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025736-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			673	162	457	1	ENST00000356435.5:c.5044G>A	p.Glu1682Lys	p.E1682K	ENST00000356435		1682	Gaa/Aaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274897	41274897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	617	485	0	ENST00000349496.5:c.1147T>C	p.Trp383Arg	p.W383R	ENST00000349496	NM_001904.3	383	Tgg/Cgg																																																																															
IGF1	3479	MSKCC	GRCh37	12	102869433	102869433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	313	602	0	ENST00000307046.8:c.208G>A	p.Gly70Ser	p.G70S	ENST00000307046	NM_001111285.1	70	Ggc/Agc																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770075	56770075	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	306	567	0	ENST00000337432.4:c.71G>C	p.Arg24Pro	p.R24P	ENST00000337432	NM_058216.2	24	cGg/cCg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368226	45368226	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	288	505	0	ENST00000262160.6:c.1376del	p.Pro459LeufsTer21	p.P459Lfs*21	ENST00000262160	NM_005901.5	459	cCt/ct																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508194	106508194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	136	265	1	ENST00000359195.3:c.188G>A	p.Gly63Asp	p.G63D	ENST00000359195	NM_002649.2	63	gGc/gAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409740	139409740	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0026153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	305	544	0	ENST00000277541.6:c.2014+2T>C		p.X672_splice	ENST00000277541	NM_017617.3	672																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44969399	44969399	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	440	430	0	ENST00000377967.4:c.4081T>C	p.Cys1361Arg	p.C1361R	ENST00000377967	NM_021140.2	1361	Tgt/Cgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	72	309	3	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	145	399	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133253974	133253974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61732929		P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	112	381	1	ENST00000320574.5:c.776G>A	p.Arg259His	p.R259H	ENST00000320574	NM_006231.2	259	cGc/cAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592108	67592108	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	56	202	0	ENST00000274335.5:c.1924C>T	p.Arg642Ter	p.R642*	ENST00000274335		642	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	60	369	0	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11129655	11129655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	95	366	1	ENST00000344626.4:c.2461G>A	p.Glu821Lys	p.E821K	ENST00000344626	NM_003072.3	821	Gag/Aag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911443	32911443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	40	274	0	ENST00000380152.3:c.2957del	p.Asn986IlefsTer5	p.N986Ifs*5	ENST00000380152		984	gAa/ga																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905055	50905055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	36	279	1	ENST00000440232.2:c.342delG	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	113	Ggg/gg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390736	139390736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	176	518	0	ENST00000277541.6:c.7455del	p.Ser2486ArgfsTer103	p.S2486Rfs*103	ENST00000277541	NM_017617.3	2485	ccC/cc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517815	187517815	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	24	167	0	ENST00000441802.2:c.12879del	p.His4293GlnfsTer56	p.H4293Qfs*56	ENST00000441802	NM_005245.3	4293	caC/ca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911074	32911074	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	20	322	0	ENST00000380152.3:c.2588delA	p.Asn863IlefsTer11	p.N863Ifs*11	ENST00000380152		861	cAa/ca																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467843	50467843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	71	267	0	ENST00000331340.3:c.1078C>T	p.Arg360Cys	p.R360C	ENST00000331340	NM_006060.4	360	Cgc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306553	41306553	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	52	370	0	ENST00000373198.4:c.1106del	p.Gly369ValfsTer28	p.G369Vfs*28	ENST00000373198	NM_133170.3	369	gGt/gt																																																																															
POLE	5426	MSKCC	GRCh37	12	133248859	133248859	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149296223		P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	62	397	3	ENST00000320574.5:c.1736G>A	p.Arg579His	p.R579H	ENST00000320574	NM_006231.2	579	cGc/cAc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53230914	53230914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	97	182	0	ENST00000375401.3:c.1879C>T	p.Arg627Cys	p.R627C	ENST00000375401	NM_004187.3	627	Cgc/Tgc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141545628	141545628	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	40	462	0	ENST00000220592.5:c.2210A>G	p.Asp737Gly	p.D737G	ENST00000220592	NM_012154.3	737	gAc/gGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	44	505	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
MET	4233	MSKCC	GRCh37	7	116413126	116413126	+	intron_variant	Intron	DEL	A	A	-			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	53	394	1	ENST00000397752.3:c.3028+1091delA		p.*1010*	ENST00000397752	NM_000245.2																																																																																	
DOT1L	84444	MSKCC	GRCh37	19	2222455	2222455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	66	391	1	ENST00000398665.3:c.3287C>T	p.Thr1096Met	p.T1096M	ENST00000398665	NM_032482.2	1096	aCg/aTg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347143	347143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	106	500	2	ENST00000262320.3:c.1868C>T	p.Ser623Leu	p.S623L	ENST00000262320	NM_003502.3	623	tCg/tTg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163306549	163306549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	31	289	0	ENST00000271452.3:c.346C>T	p.Arg116Trp	p.R116W	ENST00000271452	NM_145697.2	116	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023778	27023778	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	45	317	0	ENST00000324856.7:c.884T>G	p.Leu295Arg	p.L295R	ENST00000324856	NM_006015.4	295	cTc/cGc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78444610	78444612	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	89	253	1	ENST00000370768.2:c.77_79del	p.Gly26del	p.G26del	ENST00000370768	NM_003902.3	26	gGAGtt/gtt																																																																															
FH	2271	MSKCC	GRCh37	1	241671944	241671944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	46	351	0	ENST00000366560.3:c.697C>T	p.Arg233Cys	p.R233C	ENST00000366560	NM_000143.3	233	Cgt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108192149	108192149	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	26	297	0	ENST00000278616.4:c.6572+2T>C		p.X2191_splice	ENST00000278616	NM_000051.3	2191																																																																																
CCND2	894	MSKCC	GRCh37	12	4383352	4383352	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	58	432	0	ENST00000261254.3:c.146A>C	p.Lys49Thr	p.K49T	ENST00000261254	NM_001759.3	49	aAg/aCg																																																																															
POLE	5426	MSKCC	GRCh37	12	133256789	133256789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	125	348	2	ENST00000320574.5:c.305C>T	p.Pro102Leu	p.P102L	ENST00000320574	NM_006231.2	102	cCg/cTg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987117	36987117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	44	414	0	ENST00000354822.5:c.572G>A	p.Arg191His	p.R191H	ENST00000354822	NM_001079668.2	191	cGc/cAc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680751	88680751	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201252722		P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	133	421	1	ENST00000360948.2:c.506G>A	p.Arg169His	p.R169H	ENST00000360948	NM_001012338.2	169	cGc/cAc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727515	88727515	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	35	338	0	ENST00000360948.2:c.264G>A	p.Trp88Ter	p.W88*	ENST00000360948	NM_001012338.2	88	tgG/tgA																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121604	2121604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	86	407	1	ENST00000219476.3:c.1933G>A	p.Val645Ile	p.V645I	ENST00000219476	NM_000548.3	645	Gtc/Atc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14020477	14020477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	40	307	0	ENST00000311895.7:c.448C>T	p.Arg150Cys	p.R150C	ENST00000311895	NM_005236.2	150	Cgc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832571	72832571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	37	218	0	ENST00000268489.5:c.4010G>A	p.Ser1337Asn	p.S1337N	ENST00000268489	NM_006885.3	1337	aGc/aAc																																																																															
RARA	5914	MSKCC	GRCh37	17	38512359	38512359	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	97	273	0	ENST00000254066.5:c.1270A>C	p.Ser424Arg	p.S424R	ENST00000254066	NM_000964.3	424	Agc/Cgc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395793	45395793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	36	204	0	ENST00000262160.6:c.341G>A	p.Arg114His	p.R114H	ENST00000262160	NM_005901.5	114	cGt/cAt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2207609	2207609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	107	492	4	ENST00000398665.3:c.893C>T	p.Pro298Leu	p.P298L	ENST00000398665	NM_032482.2	298	cCc/cTc																																																																															
INSR	3643	MSKCC	GRCh37	19	7174672	7174672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	92	382	0	ENST00000302850.5:c.1045G>A	p.Asp349Asn	p.D349N	ENST00000302850	NM_000208.2	349	Gac/Aac																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10249229	10249229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	45	315	1	ENST00000340748.4:c.3953C>T	p.Ala1318Val	p.A1318V	ENST00000340748		1318	gCg/gTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097602	11097602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	85	479	0	ENST00000344626.4:c.782C>A	p.Pro261His	p.P261H	ENST00000344626	NM_003072.3	261	cCt/cAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130370	11130370	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	97	445	1	ENST00000344626.4:c.2609T>A	p.Leu870His	p.L870H	ENST00000344626	NM_003072.3	870	cTc/cAc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18966799	18966799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	103	542	1	ENST00000262803.5:c.1610C>T	p.Thr537Met	p.T537M	ENST00000262803	NM_002911.3	537	aCg/aTg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753821	42753821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	129	572	0	ENST00000222329.4:c.443C>T	p.Thr148Met	p.T148M	ENST00000222329	NM_006494.2	148	aCg/aTg																																																																															
CENPA	1058	MSKCC	GRCh37	2	27009121	27009126	+	inframe_deletion	In_Frame_Del	DEL	CCCGAC	CCCGAC	-			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	51	140	0	ENST00000335756.4:c.66_71del	p.Thr23_Pro24del	p.T23_P24del	ENST00000335756	NM_001809.3	19	agCCCGACc/agc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47657036	47657037	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	66	299	0	ENST00000233146.2:c.1235dup	p.Asn412LysfsTer5	p.N412Kfs*5	ENST00000233146	NM_000251.2	411	ata/atAa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99156098	99156098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	132	334	0	ENST00000074304.5:c.778C>T	p.Arg260Trp	p.R260W	ENST00000074304	NM_001134224.1	260	Cgg/Tgg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728832	190728833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	30	304	0	ENST00000441310.2:c.2224dup	p.Thr742AsnfsTer10	p.T742Nfs*10	ENST00000441310	NM_000534.4	740	-/A																																																																															
EP300	2033	MSKCC	GRCh37	22	41572366	41572366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	53	374	2	ENST00000263253.7:c.4895C>T	p.Thr1632Met	p.T1632M	ENST00000263253	NM_001429.3	1632	aCg/aTg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31511154	31511154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	85	372	2	ENST00000344624.3:c.1420G>A	p.Asp474Asn	p.D474N	ENST00000344624		474	Gat/Aat																																																																															
CCND3	896	MSKCC	GRCh37	6	41903745	41903745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	162	408	2	ENST00000372991.4:c.812G>A	p.Arg271Gln	p.R271Q	ENST00000372991	NM_001760.3	271	cGg/cAg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521860	157521860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	32	314	0	ENST00000346085.5:c.4132G>A	p.Gly1378Ser	p.G1378S	ENST00000346085	NM_020732.3	1378	Ggc/Agc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730014	41730014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	57	355	0	ENST00000242208.4:c.515C>A	p.Thr172Asn	p.T172N	ENST00000242208	NM_002192.2	172	aCc/aAc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38189058	38189058	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	48	398	0	ENST00000317025.8:c.956G>T	p.Arg319Met	p.R319M	ENST00000317025	NM_023034.1	319	aGg/aTg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5089865	5089865	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	57	200	0	ENST00000381652.3:c.2761+2T>C		p.X921_splice	ENST00000381652	NM_004972.3	921																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0026289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	33	244	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ATM	472	MSKCC	GRCh37	11	108205781	108205781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	29	264	0	ENST00000278616.4:c.8096C>T	p.Pro2699Leu	p.P2699L	ENST00000278616	NM_000051.3	2699	cCa/cTa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602293	10602293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	83	346	0	ENST00000171111.5:c.1285G>T	p.Gly429Cys	p.G429C	ENST00000171111	NM_203500.1	429	Ggc/Tgc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074036	8074036	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	23	223	0	ENST00000377482.5:c.623A>T	p.Asn208Ile	p.N208I	ENST00000377482	NM_018948.3	208	aAc/aTc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631132	69631132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	45	354	0	ENST00000334134.2:c.280G>T	p.Gly94Trp	p.G94W	ENST00000334134	NM_005247.2	94	Ggg/Tgg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37882851	37882851	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	64	362	2	ENST00000269571.5:c.2909G>T	p.Arg970Leu	p.R970L	ENST00000269571		970	cGg/cTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147573	47147573	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	21	205	0	ENST00000409792.3:c.4753G>T	p.Asp1585Tyr	p.D1585Y	ENST00000409792	NM_014159.6	1585	Gat/Tat																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259025	89259025	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	14	84	0	ENST00000336596.2:c.169G>C	p.Gly57Arg	p.G57R	ENST00000336596	NM_005233.5	57	Ggt/Cgt																																																																															
IRF4	3662	MSKCC	GRCh37	6	401621	401621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	49	295	2	ENST00000380956.4:c.943G>A	p.Val315Met	p.V315M	ENST00000380956	NM_001195286.1	315	Gtg/Atg																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197091	26197091	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	84	218	0	ENST00000356476.2:c.388C>A	p.Arg130Ser	p.R130S	ENST00000356476		130	Cgc/Agc																																																																															
HGF	3082	MSKCC	GRCh37	7	81392062	81392062	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	18	173	0	ENST00000222390.5:c.215A>T	p.Asn72Ile	p.N72I	ENST00000222390	NM_000601.4	72	aAt/aTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521352	8521352	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	43	252	0	ENST00000356435.5:c.886C>A	p.Gln296Lys	p.Q296K	ENST00000356435		296	Cag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437561	49437561	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	208	358	0	ENST00000301067.7:c.5324C>G	p.Ala1775Gly	p.A1775G	ENST00000301067	NM_003482.3	1775	gCc/gGc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680641	88680641	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	150	335	0	ENST00000360948.2:c.616C>G	p.Gln206Glu	p.Q206E	ENST00000360948	NM_001012338.2	206	Cag/Gag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0026292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	192	383	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576433	67576433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	43	319	0	ENST00000274335.5:c.712C>T	p.Leu238Phe	p.L238F	ENST00000274335		238	Ctt/Ttt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039401	47039401	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	139	333	0	ENST00000329236.7:c.794del	p.Asn265ThrfsTer142	p.N265Tfs*142	ENST00000329236	NM_001204466.1	265	Aac/ac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0026293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	419	343	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175942	176175942	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs964768927		P-0026293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	40	55	0	ENST00000367669.3:c.173C>T	p.Ser58Leu	p.S58L	ENST00000367669	NM_022457.5	58	tCg/tTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721024	176721024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	64	285	2	ENST00000439151.2:c.6655C>T	p.Arg2219Cys	p.R2219C	ENST00000439151	NM_022455.4	2219	Cgt/Tgt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156834148	156834148	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0026293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1452	80	444	0	ENST00000524377.1:c.215A>G	p.Tyr72Cys	p.Y72C	ENST00000524377	NM_002529.3	72	tAc/tGc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11924319	11924319	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0026293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	87	122	0	ENST00000353533.5:c.115+1G>T		p.X39_splice	ENST00000353533	NM_003010.3	39																																																																																
EGFR	1956	MSKCC	GRCh37	7	55241659	55241659	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	419	383	0	ENST00000275493.2:c.2107C>G	p.Leu703Val	p.L703V	ENST00000275493	NM_005228.3	703	Ctc/Gtc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0026295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	20	386	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
BCL2	596	MSKCC	GRCh37	18	60985881	60985881	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	43	284	1	ENST00000333681.4:c.19A>T	p.Thr7Ser	p.T7S	ENST00000333681		7	Aca/Tca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	85	335	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	67	182	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0026296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	112	406	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858477	57858477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	141	302	0	ENST00000228682.2:c.215G>A	p.Arg72Gln	p.R72Q	ENST00000228682	NM_005269.2	72	cGg/cAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117788	70117788	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	125	366	0	ENST00000245479.2:c.256T>C	p.Trp86Arg	p.W86R	ENST00000245479	NM_000346.3	86	Tgg/Cgg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119913	70119914	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0026296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	61	313	0	ENST00000245479.2:c.917_918dup	p.Pro307CysfsTer77	p.P307Cfs*77	ENST00000245479	NM_000346.3	305	-/GT																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120337	70120338	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACTCC			P-0026296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	257	655	0	ENST00000245479.2:c.1341_1345dup	p.Ser449ThrfsTer23	p.S449Tfs*23	ENST00000245479	NM_000346.3	447	aac/aACTCCac																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512365	149512365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	272	366	0	ENST00000261799.4:c.1075G>A	p.Asp359Asn	p.D359N	ENST00000261799	NM_002609.3	359	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0026323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	11	340	1	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0026458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	276	438	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0026458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	375	564	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220622	1220622	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	441	640	1	ENST00000326873.7:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000326873	NM_000455.4	214	Cag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098380	11098380	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	384	582	0	ENST00000344626.4:c.898C>T	p.Gln300Ter	p.Q300*	ENST00000344626	NM_003072.3	300	Cag/Tag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281634	15281634	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0026458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	460	812	4	ENST00000263388.2:c.4739C>T	p.Ser1580Leu	p.S1580L	ENST00000263388	NM_000435.2	1580	tCg/tTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2202697	2202697	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0026458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	392	657	0	ENST00000398665.3:c.708-2A>T		p.X236_splice	ENST00000398665	NM_032482.2	236																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10610422	10610422	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	443	718	0	ENST00000171111.5:c.288C>G	p.His96Gln	p.H96Q	ENST00000171111	NM_203500.1	96	caC/caG																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821553	32821553	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	435	733	0	ENST00000354258.4:c.41G>C	p.Trp14Ser	p.W14S	ENST00000354258	NM_000593.5	14	tGg/tCg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692791	89692796	+	inframe_deletion	In_Frame_Del	DEL	ACCATA	ACCATA	-			P-0026461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	164	418	0	ENST00000371953.3:c.278_283del	p.His93_Asn94del	p.H93_N94del	ENST00000371953	NM_000314.4	92	gACCATAac/gac																																																																															
STK11	6794	MSKCC	GRCh37	19	1220369	1220388	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGGTACTTCTGTCAGCTGA	CAGGTACTTCTGTCAGCTGA	-			P-0026461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	116	530	0	ENST00000326873.7:c.465-3_481del		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36224384	36224384	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	250	831	1	ENST00000222270.7:c.6934C>T	p.Gln2312Ter	p.Q2312*	ENST00000222270	NM_014727.1	2312	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs879253911		P-0026464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	122	617	0	ENST00000269305.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000269305	NM_001126112.2	180	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACT			P-0026464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	101	533	0	ENST00000275493.2:c.2310_2311insTAC	p.Asp770_Asn771insTyr	p.D770_N771insY	ENST00000275493	NM_005228.3	770	gac/gACTac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0026226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	68	225	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155725	56155726	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0026226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	50	198	0	ENST00000399503.3:c.819_820delAG	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	273	AGa/a																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115440	115115440	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	46	341	0	ENST00000257566.3:c.886A>G	p.Asn296Asp	p.N296D	ENST00000257566	NM_016569.3	296	Aac/Gac																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348810	89348811	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0026226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	201	688	0	ENST00000301030.4:c.4139dup	p.Tyr1380Ter	p.Y1380*	ENST00000301030	NM_001256183.1	1380	tac/taAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189417	56189418	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0026226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	60	316	0	ENST00000399503.3:c.4451_4452del	p.Val1484GlyfsTer38	p.V1484Gfs*38	ENST00000399503	NM_005921.1	1483	gaTGtg/gatg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918709	44918709	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0026226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	46	275	0	ENST00000377967.4:c.1192C>T	p.Gln398Ter	p.Q398*	ENST00000377967	NM_021140.2	398	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0026237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	152	353	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42852481	42852481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	123	334	0	ENST00000398585.3:c.605G>A	p.Arg202Lys	p.R202K	ENST00000398585	NM_001135099.1	202	aGg/aAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832266	72832266	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	99	220	0	ENST00000268489.5:c.4315C>T	p.Arg1439Ter	p.R1439*	ENST00000268489	NM_006885.3	1439	Cga/Tga																																																																															
ALK	238	MSKCC	GRCh37	2	29456434	29456434	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	139	389	0	ENST00000389048.3:c.2484T>A	p.Phe828Leu	p.F828L	ENST00000389048	NM_004304.4	828	ttT/ttA																																																																															
HRAS	3265	MSKCC	GRCh37	11	534285	534285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	37	349	0	ENST00000311189.7:c.38G>A	p.Gly13Asp	p.G13D	ENST00000311189		13	gGt/gAt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061127	38061197	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGC	TGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGC	-			P-0026256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	67	75	0	ENST00000250448.2:c.792_862del	p.Arg265GlyfsTer4	p.R265Gfs*4	ENST00000250448	NM_004496.3	264	aaGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAag/aaag																																																																															
ALK	238	MSKCC	GRCh37	2	29436892	29436892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	9	334	1	ENST00000389048.3:c.3701C>A	p.Ala1234Asp	p.A1234D	ENST00000389048	NM_004304.4	1234	gCc/gAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0026261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	90	285	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ATM	472	MSKCC	GRCh37	11	108139157	108139157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	78	263	1	ENST00000278616.4:c.2659G>A	p.Glu887Lys	p.E887K	ENST00000278616	NM_000051.3	887	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68847399	68847399	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0026261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	84	251	0	ENST00000261769.5:c.1320+1G>A		p.X440_splice	ENST00000261769	NM_004360.3	440																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5260818	5260818	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	100	383	3	ENST00000357368.4:c.593G>A	p.Arg198Gln	p.R198Q	ENST00000357368	NM_002850.3	198	cGa/cAa																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652272	36652272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	95	276	0	ENST00000244741.5:c.394G>A	p.Gly132Ser	p.G132S	ENST00000244741	NM_000389.4	132	Ggt/Agt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123227947	123227947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	81	323	0	ENST00000218089.9:c.3658G>A	p.Glu1220Lys	p.E1220K	ENST00000218089	NM_001042749.1	1220	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	55	260	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs764146326		P-0026262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	52	361	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913500		P-0026262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	14	159	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023618	27023618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	12	214	0	ENST00000324856.7:c.724G>T	p.Gly242Cys	p.G242C	ENST00000324856	NM_006015.4	242	Ggc/Tgc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241868	72241868	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	20	202	0	ENST00000357731.5:c.522C>A	p.His174Gln	p.H174Q	ENST00000357731	NM_173808.2	174	caC/caA																																																																															
NUF2	83540	MSKCC	GRCh37	1	163315477	163315477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	31	248	0	ENST00000271452.3:c.817G>T	p.Val273Leu	p.V273L	ENST00000271452	NM_145697.2	273	Gtg/Ttg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136254	64136254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	32	361	0	ENST00000334205.4:c.1413G>T	p.Glu471Asp	p.E471D	ENST00000334205	NM_003942.2	471	gaG/gaT																																																																															
ALK	238	MSKCC	GRCh37	2	29449788	29449788	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0026262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	37	446	0	ENST00000389048.3:c.3067G>T	p.Val1023Leu	p.V1023L	ENST00000389048	NM_004304.4	1023	Gtg/Ttg																																																																															
KDR	3791	MSKCC	GRCh37	4	55973965	55973965	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	28	307	0	ENST00000263923.4:c.1351C>G	p.Pro451Ala	p.P451A	ENST00000263923	NM_002253.2	451	Cct/Gct																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143094907	143094907	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	46	279	0	ENST00000262992.4:c.1237G>C	p.Val413Leu	p.V413L	ENST00000262992	NM_001101669.1	413	Gtt/Ctt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295356	1295356	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0026262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	23	198	0				ENST00000310581	NM_198253.2																																																																																	
IL7R	3575	MSKCC	GRCh37	5	35867451	35867451	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	23	211	0	ENST00000303115.3:c.265C>G	p.Gln89Glu	p.Q89E	ENST00000303115	NM_002185.3	89	Caa/Gaa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873750	35873750	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0026262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	19	153	0	ENST00000303115.3:c.706G>T	p.Gly236Trp	p.G236W	ENST00000303115	NM_002185.3	236	Ggg/Tgg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139566456	139566456	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	34	364	0	ENST00000308874.7:c.715C>A	p.Leu239Ile	p.L239I	ENST00000308874		239	Ctc/Atc																																																																															
ATRX	546	MSKCC	GRCh37	X	76889056	76889056	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0026262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	30	200	0	ENST00000373344.5:c.4954G>T	p.Glu1652Ter	p.E1652*	ENST00000373344	NM_000489.3	1652	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0026316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	70	162	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0026316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	78	301	1	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435069	49435073	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGG	TGAGG	-			P-0026316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	219	343	0	ENST00000301067.7:c.6480_6484del	p.Phe2160LeufsTer40	p.F2160Lfs*40	ENST00000301067	NM_003482.3	2160	ttCCTCAag/ttag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830100	72830101	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	101	300	0	ENST00000268489.5:c.6480dup	p.Arg2161AlafsTer5	p.R2161Afs*5	ENST00000268489	NM_006885.3	2160	-/G																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933965	39933966	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	20	240	0	ENST00000378444.4:c.633_634insG	p.Lys212GlufsTer89	p.K212Efs*89	ENST00000378444	NM_001123385.1	211	-/G																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	104	292	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MGA	23269	MSKCC	GRCh37	15	42003496	42003496	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	21	285	0	ENST00000219905.7:c.3033C>A	p.Tyr1011Ter	p.Y1011*	ENST00000219905	NM_001164273.1	1011	taC/taA																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039842	47039846	+	frameshift_variant	Frame_Shift_Del	DEL	TCGCA	TCGCA	-			P-0026363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	50	374	0	ENST00000329236.7:c.953_957del	p.Arg318GlnfsTer45	p.R318Qfs*45	ENST00000329236	NM_001204466.1	317	agTCGCAtc/agtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	92	302	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771831816		P-0026364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	162	157	1	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984414	201984414	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	193	383	0	ENST00000359651.3:c.1079G>T	p.Gly360Val	p.G360V	ENST00000359651		360	gGc/gTc																																																																															
ATM	472	MSKCC	GRCh37	11	108218036	108218036	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	70	264	0	ENST00000278616.4:c.8615A>T	p.His2872Leu	p.H2872L	ENST00000278616	NM_000051.3	2872	cAt/cTt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691943	30691943	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	174	214	0	ENST00000359013.4:c.520T>A	p.Phe174Ile	p.F174I	ENST00000359013	NM_001024847.2	174	Ttc/Atc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044594	47044595	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	209	224	0	ENST00000329236.7:c.1857_1858insA	p.Glu620ArgfsTer22	p.E620Rfs*22	ENST00000329236	NM_001204466.1	619	-/A																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552837	106552837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	145	559	1	ENST00000369096.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000369096	NM_001198.3	268	Cgt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0026370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	170	518	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0026370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	99	338	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0026370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	97	522	1	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
INHBA	3624	MSKCC	GRCh37	7	41729814	41729814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	74	297	0	ENST00000242208.4:c.715G>T	p.Asp239Tyr	p.D239Y	ENST00000242208	NM_002192.2	239	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	276	435	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578179	7578179	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0026376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	350	623	0	ENST00000269305.4:c.670G>T	p.Glu224Ter	p.E224*	ENST00000269305	NM_001126112.2	224	Gag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1220706	1220706	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	170	464	0	ENST00000326873.7:c.727del	p.Val243SerfsTer44	p.V243Sfs*44	ENST00000326873	NM_000455.4	242	Ggg/gg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238758086		P-0026376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	22	472	0	ENST00000358026.2:c.2729C>T	p.Thr910Met	p.T910M	ENST00000358026	NM_001128849.1	910	aCg/aTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356385	66356385	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	166	380	0	ENST00000273854.3:c.1112C>G	p.Thr371Ser	p.T371S	ENST00000273854	NM_004439.5	371	aCt/aGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510141	187510141	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	116	392	0	ENST00000441802.2:c.13372C>A	p.Gln4458Lys	p.Q4458K	ENST00000441802	NM_005245.3	4458	Cag/Aag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922249	39922249	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	156	341	0	ENST00000378444.4:c.3923A>T	p.Gln1308Leu	p.Q1308L	ENST00000378444	NM_001123385.1	1308	cAg/cTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910755	32910755	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	26	398	0	ENST00000380152.3:c.2263T>G	p.Ser755Ala	p.S755A	ENST00000380152		755	Tcc/Gcc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0007513-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1089	240	459	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			807	148	493	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391024	89391024	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			716	107	519	0	ENST00000336596.2:c.1095delA	p.Lys365AsnfsTer6	p.K365Nfs*6	ENST00000336596	NM_005233.5	364	Aaa/aa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			816	113	481	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11118684	11118684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			686	116	638	0	ENST00000344626.4:c.2108C>T	p.Ala703Val	p.A703V	ENST00000344626	NM_003072.3	703	gCg/gTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653796	89653798	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			627	68	448	0	ENST00000371953.3:c.97_99delATT	p.Ile33del	p.I33del	ENST00000371953	NM_000314.4	32	ATT/-																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			685	72	415	2	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			539	118	596	9	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			865	155	475	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459525	50459525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			894	84	399	0	ENST00000331340.3:c.814G>A	p.Ala272Thr	p.A272T	ENST00000331340	NM_006060.4	272	Gcc/Acc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355942	73355942	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	191	694	3	ENST00000377767.4:c.29del	p.Lys10ArgfsTer7	p.K10Rfs*7	ENST00000377767	NM_014953.3	10	aAg/ag																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			597	72	699	1	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			523	48	538	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129338	152129338	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			447	69	436	0	ENST00000206249.3:c.296del	p.Pro99HisfsTer10	p.P99Hfs*10	ENST00000206249	NM_000125.3	97	ttC/tt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			251	67	378	1	ENST00000307078.5:c.1214_1215delAG	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827732	72827732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			425	71	494	0	ENST00000268489.5:c.8849G>A	p.Arg2950His	p.R2950H	ENST00000268489	NM_006885.3	2950	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101612	27101612	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			752	132	823	1	ENST00000324856.7:c.4899del	p.Met1634Ter	p.M1634*	ENST00000324856	NM_006015.4	1632	Ccc/cc																																																																															
APC	324	MSKCC	GRCh37	5	112177050	112177050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			732	76	561	2	ENST00000257430.4:c.5759G>A	p.Arg1920Gln	p.R1920Q	ENST00000257430	NM_000038.5	1920	cGa/cAa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250948	10250948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			566	84	592	2	ENST00000340748.4:c.3532C>T	p.Arg1178Trp	p.R1178W	ENST00000340748		1178	Cgg/Tgg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			74	14	62	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272201	15272201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			317	48	550	2	ENST00000263388.2:c.6238C>T	p.Arg2080Trp	p.R2080W	ENST00000263388	NM_000435.2	2080	Cgg/Tgg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106042	8106042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			549	94	510	0	ENST00000346208.3:c.862G>A	p.Gly288Arg	p.G288R	ENST00000346208		288	Ggg/Agg																																																																															
RB1	5925	MSKCC	GRCh37	13	48878077	48878082	+	inframe_deletion	In_Frame_Del	DEL	CCGCCA	CCGCCA	-			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			348	48	197	0	ENST00000267163.4:c.34_39del	p.Thr12_Ala13del	p.T12_A13del	ENST00000267163	NM_000321.2	10	gCCGCCAcc/gcc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			405	115	626	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631830	90631830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			448	69	521	1	ENST00000330062.3:c.523C>T	p.His175Tyr	p.H175Y	ENST00000330062	NM_002168.2	175	Cat/Tat																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344955	118344955	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			395	44	326	1	ENST00000534358.1:c.3086delA	p.Lys1029ArgfsTer65	p.K1029Rfs*65	ENST00000534358	NM_005933.3	1027	ctA/ct																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557762	21557762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			616	129	620	2	ENST00000382592.4:c.2083G>A	p.Ala695Thr	p.A695T	ENST00000382592	NM_014572.2	695	Gcc/Acc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211898	36211899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775294431		P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			795	97	875	1	ENST00000222270.7:c.1656dup	p.Lys553GlnfsTer46	p.K553Qfs*46	ENST00000222270	NM_014727.1	550	gac/gaCc																																																																															
TET2	54790	MSKCC	GRCh37	4	106156652	106156652	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			540	94	446	0	ENST00000380013.4:c.1557delT	p.Phe519LeufsTer14	p.F519Lfs*14	ENST00000380013	NM_001127208.2	518	aTt/at																																																																															
INHA	3623	MSKCC	GRCh37	2	220439679	220439679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			521	92	672	2	ENST00000243786.2:c.532G>A	p.Val178Met	p.V178M	ENST00000243786	NM_002191.3	178	Gtg/Atg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657656	37657656	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			654	92	602	0	ENST00000447079.4:c.2573G>T	p.Arg858Leu	p.R858L	ENST00000447079	NM_015083.1	858	cGg/cTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413936	139413936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			666	129	685	1	ENST00000277541.6:c.824G>A	p.Gly275Asp	p.G275D	ENST00000277541	NM_017617.3	275	gGc/gAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098425	11098425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			359	49	444	0	ENST00000344626.4:c.947del	p.Pro316LeufsTer10	p.P316Lfs*10	ENST00000344626	NM_003072.3	315	Ccc/cc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16265848	16265848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			696	99	683	1	ENST00000375759.3:c.10921C>T	p.Arg3641Cys	p.R3641C	ENST00000375759	NM_015001.2	3641	Cgc/Tgc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462141	120462141	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			678	100	619	1	ENST00000256646.2:c.5575A>G	p.Ile1859Val	p.I1859V	ENST00000256646	NM_024408.3	1859	Atc/Gtc																																																																															
PARP1	142	MSKCC	GRCh37	1	226570832	226570832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			719	38	541	3	ENST00000366794.5:c.1064G>A	p.Arg355His	p.R355H	ENST00000366794	NM_001618.3	355	cGt/cAt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852248	63852248	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			684	124	575	0	ENST00000279873.7:c.3026C>G	p.Ala1009Gly	p.A1009G	ENST00000279873	NM_032199.2	1009	gCg/gGg																																																																															
TET1	80312	MSKCC	GRCh37	10	70412276	70412276	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			592	69	464	1	ENST00000373644.4:c.4386C>A	p.Asn1462Lys	p.N1462K	ENST00000373644	NM_030625.2	1462	aaC/aaA																																																																															
KDM5A	5927	MSKCC	GRCh37	12	432249	432249	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			745	122	464	0	ENST00000399788.2:c.2274del	p.Asp759IlefsTer2	p.D759Ifs*2	ENST00000399788	NM_001042603.1	758	aaA/aa																																																																															
POLE	5426	MSKCC	GRCh37	12	133201523	133201523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			503	121	675	0	ENST00000320574.5:c.6715G>A	p.Ala2239Thr	p.A2239T	ENST00000320574	NM_006231.2	2239	Gcg/Acg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964206	28964206	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			492	66	351	0	ENST00000282397.4:c.1696del	p.Met566CysfsTer8	p.M566Cfs*8	ENST00000282397	NM_002019.4	566	Atg/tg																																																																															
MGA	23269	MSKCC	GRCh37	15	42054395	42054396	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			511	60	472	0	ENST00000219905.7:c.7585dupA	p.Arg2529LysfsTer9	p.R2529Kfs*9	ENST00000219905	NM_001164273.1	2527	caa/cAaa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43700281	43700281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			854	117	682	1	ENST00000382044.4:c.5606C>T	p.Pro1869Leu	p.P1869L	ENST00000382044	NM_001141980.1	1869	cCc/cTc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10248651	10248651	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			393	61	478	0	ENST00000340748.4:c.4102C>T	p.Arg1368Ter	p.R1368*	ENST00000340748		1368	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216215	36216215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			511	67	611	2	ENST00000222270.7:c.3623C>T	p.Ala1208Val	p.A1208V	ENST00000222270	NM_014727.1	1208	gCc/gTc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213317	39213317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			963	174	720	1	ENST00000402219.2:c.3650G>A	p.Arg1217Gln	p.R1217Q	ENST00000402219	NM_005633.3	1217	cGa/cAa																																																																															
IDH1	3417	MSKCC	GRCh37	2	209104655	209104655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			671	99	519	0	ENST00000345146.2:c.923C>T	p.Ala308Val	p.A308V	ENST00000345146	NM_005896.2	308	gCc/gTc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39742793	39742793	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			551	81	416	0	ENST00000361337.2:c.1636C>T	p.Arg546Ter	p.R546*	ENST00000361337	NM_003286.2	546	Cga/Tga																																																																															
BCL6	604	MSKCC	GRCh37	3	187446201	187446201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			779	126	766	1	ENST00000232014.4:c.1487C>T	p.Thr496Met	p.T496M	ENST00000232014	NM_001130845.1	496	aCg/aTg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1952895	1952895	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			712	100	610	0	ENST00000382891.5:c.1978C>T	p.Arg660Ter	p.R660*	ENST00000382891	NM_133335.3	660	Cga/Tga																																																																															
TET2	54790	MSKCC	GRCh37	4	106157648	106157648	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			511	54	337	1	ENST00000380013.4:c.2549A>G	p.His850Arg	p.H850R	ENST00000380013	NM_001127208.2	850	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111624	56111624	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			427	70	255	0	ENST00000399503.3:c.224A>C	p.Glu75Ala	p.E75A	ENST00000399503	NM_005921.1	75	gAg/gCg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638499	176638499	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			896	122	624	4	ENST00000439151.2:c.3103delT	p.Ser1035GlnfsTer5	p.S1035Qfs*5	ENST00000439151	NM_022455.4	1033	gcT/gc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800519	32800519	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376467259		P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	181	782	4	ENST00000374899.4:c.1028G>A	p.Arg343His	p.R343H	ENST00000374899	NM_018833.2	343	cGc/cAc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946435	2946435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			778	89	673	0	ENST00000396946.4:c.3302G>A	p.Arg1101His	p.R1101H	ENST00000396946	NM_032415.4	1101	cGc/cAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151856117	151856117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			647	105	480	2	ENST00000262189.6:c.11501G>A	p.Gly3834Asp	p.G3834D	ENST00000262189	NM_170606.2	3834	gGc/gAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860577	151860577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			643	74	509	1	ENST00000262189.6:c.10085C>T	p.Thr3362Ile	p.T3362I	ENST00000262189	NM_170606.2	3362	aCt/aTt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372312	55372313	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			606	74	638	0	ENST00000297316.4:c.1007dup	p.Pro337SerfsTer28	p.P337Sfs*28	ENST00000297316	NM_022454.3	334	-/C																																																																															
AGO2	27161	MSKCC	GRCh37	8	141572621	141572621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			521	49	593	0	ENST00000220592.5:c.449G>A	p.Arg150Gln	p.R150Q	ENST00000220592	NM_012154.3	150	cGg/cAg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737341	145737341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			598	121	700	1	ENST00000428558.2:c.3346C>T	p.Pro1116Ser	p.P1116S	ENST00000428558	NM_004260.3	1116	Ccg/Tcg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389232	8389232	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0025330-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			598	88	483	0	ENST00000356435.5:c.4386G>T	p.Arg1462Ser	p.R1462S	ENST00000356435		1462	agG/agT																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0026136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	120	460	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2122257	2122257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	78	719	0	ENST00000219476.3:c.2113G>A	p.Val705Met	p.V705M	ENST00000219476	NM_000548.3	705	Gtg/Atg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0026136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	67	411	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968200	134968200	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143309901		P-0026136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	97	607	0	ENST00000398015.3:c.2713C>T	p.Arg905Cys	p.R905C	ENST00000398015	NM_004441.4	905	Cgc/Tgc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956789	68956789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	38	868	0	ENST00000288368.4:c.907G>A	p.Glu303Lys	p.E303K	ENST00000288368	NM_024870.2	303	Gag/Aag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730904	40730904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770182876		P-0026136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	65	713	2	ENST00000373198.4:c.3631G>A	p.Glu1211Lys	p.E1211K	ENST00000373198	NM_133170.3	1211	Gag/Aag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2137898	2137898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	190	847	0	ENST00000219476.3:c.5024C>T	p.Pro1675Leu	p.P1675L	ENST00000219476	NM_000548.3	1675	cCg/cTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65323381	65323381	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	141	715	0	ENST00000342505.4:c.1416T>G	p.Phe472Leu	p.F472L	ENST00000342505	NM_002227.2	472	ttT/ttG																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96920731	96920731	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	36	510	0	ENST00000258439.3:c.249C>G	p.Phe83Leu	p.F83L	ENST00000258439	NM_001193304.2	83	ttC/ttG																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402660	20402660	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	144	577	0	ENST00000346618.3:c.198del	p.Thr67ProfsTer13	p.T67Pfs*13	ENST00000346618	NM_001949.4	66	tCc/tc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38273416	38273416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	40	1055	1	ENST00000425967.3:c.1919G>A	p.Arg640Gln	p.R640Q	ENST00000425967	NM_001174067.1	640	cGa/cAa																																																																															
AGO2	27161	MSKCC	GRCh37	8	141572697	141572697	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	34	656	0	ENST00000220592.5:c.373G>C	p.Asp125His	p.D125H	ENST00000220592	NM_012154.3	125	Gat/Cat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0026138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	211	504	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006884	47006884	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	29	361	0	ENST00000329236.7:c.4G>T	p.Glu2Ter	p.E2*	ENST00000329236	NM_001204466.1	2	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	72	504	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597401	10597401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	115	651	0	ENST00000171111.5:c.1802G>T	p.Arg601Leu	p.R601L	ENST00000171111	NM_203500.1	601	cGg/cTg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38189104	38189104	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	51	393	0	ENST00000317025.8:c.911-1G>A		p.X304_splice	ENST00000317025	NM_023034.1	304																																																																																
FUBP1	8880	MSKCC	GRCh37	1	78420988	78420988	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	86	408	0	ENST00000370768.2:c.1732G>T	p.Gly578Ter	p.G578*	ENST00000370768	NM_003902.3	578	Gga/Tga																																																																															
FLT1	2321	MSKCC	GRCh37	13	28913395	28913395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	95	535	1	ENST00000282397.4:c.2398G>T	p.Asp800Tyr	p.D800Y	ENST00000282397	NM_002019.4	800	Gac/Tac																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041792	14041792	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	61	397	0	ENST00000311895.7:c.2339C>A	p.Ser780Tyr	p.S780Y	ENST00000311895	NM_005236.2	780	tCc/tAc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15964736	15964736	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	73	417	0	ENST00000268712.3:c.5860A>G	p.Ser1954Gly	p.S1954G	ENST00000268712	NM_006311.3	1954	Agt/Ggt																																																																															
STK11	6794	MSKCC	GRCh37	19	1219335	1219336	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	107	586	1	ENST00000326873.7:c.387_388delinsTT	p.Met129_Glu130delinsIleTer	p.M129_E130delinsI*	ENST00000326873	NM_000455.4	129	atGGag/atTTag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11095947	11095947	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	73	586	2	ENST00000344626.4:c.223-2A>T		p.X75_splice	ENST00000344626	NM_003072.3	75																																																																																
POLD1	5424	MSKCC	GRCh37	19	50918796	50918796	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	111	612	0	ENST00000440232.2:c.2666G>T	p.Arg889Leu	p.R889L	ENST00000440232	NM_002691.3	889	cGc/cTc																																																																															
KIT	3815	MSKCC	GRCh37	4	55561885	55561885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	51	309	0	ENST00000288135.5:c.275C>A	p.Thr92Asn	p.T92N	ENST00000288135	NM_000222.2	92	aCc/aAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638735	176638735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	84	580	0	ENST00000439151.2:c.3335G>T	p.Ser1112Ile	p.S1112I	ENST00000439151	NM_022455.4	1112	aGc/aTc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222438	53222438	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	112	582	0	ENST00000375401.3:c.4394G>T	p.Arg1465Leu	p.R1465L	ENST00000375401	NM_004187.3	1465	cGg/cTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411017	63411017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	77	523	0	ENST00000330258.3:c.2150G>T	p.Cys717Phe	p.C717F	ENST00000330258	NM_152424.3	717	tGc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			562	34	583	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0026016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			545	35	456	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62292727	62292727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			838	50	594	0	ENST00000508582.2:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000508582		60	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952086	178952086	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	13	540	0	ENST00000263967.3:c.3141T>A	p.His1047Gln	p.H1047Q	ENST00000263967	NM_006218.2	1047	caT/caA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874713	151874713	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	182	414	1	ENST00000262189.6:c.7825C>T	p.Arg2609Ter	p.R2609*	ENST00000262189	NM_170606.2	2609	Cga/Tga																																																																															
EZH2	2146	MSKCC	GRCh37	7	148544344	148544344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	40	680	3	ENST00000320356.2:c.47G>A	p.Arg16Gln	p.R16Q	ENST00000320356	NM_004456.4	16	cGg/cAg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137328452	137328452	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	319	782	0	ENST00000481739.1:c.1381A>T	p.Met461Leu	p.M461L	ENST00000481739	NM_002957.4	461	Atg/Ttg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0026155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	173	510	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0026161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	445	495	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TET1	80312	MSKCC	GRCh37	10	70333573	70333573	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	112	479	0	ENST00000373644.4:c.1478C>A	p.Ala493Asp	p.A493D	ENST00000373644	NM_030625.2	493	gCt/gAt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137183	64137183	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	118	500	0	ENST00000334205.4:c.1615G>T	p.Ala539Ser	p.A539S	ENST00000334205	NM_003942.2	539	Gcc/Tcc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858967	57858967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	181	677	0	ENST00000228682.2:c.463G>T	p.Gly155Cys	p.G155C	ENST00000228682	NM_005269.2	155	Ggt/Tgt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112319	115112319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	25	116	0	ENST00000257566.3:c.1421C>T	p.Pro474Leu	p.P474L	ENST00000257566	NM_016569.3	474	cCg/cTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476369	88476369	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	126	587	0	ENST00000360948.2:c.1763A>C	p.Glu588Ala	p.E588A	ENST00000360948	NM_001012338.2	588	gAg/gCg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857112	9857112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	91	336	0	ENST00000330684.3:c.4289C>T	p.Pro1430Leu	p.P1430L	ENST00000330684	NM_001134407.1	1430	cCt/cTt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641693	23641693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	119	615	0	ENST00000261584.4:c.1782G>T	p.Arg594Ser	p.R594S	ENST00000261584	NM_024675.3	594	agG/agT																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713589	30713589	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	72	399	0	ENST00000359013.4:c.989T>C	p.Leu330Pro	p.L330P	ENST00000359013	NM_001024847.2	330	cTc/cCc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66233137	66233137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	160	466	0	ENST00000273854.3:c.1862G>T	p.Cys621Phe	p.C621F	ENST00000273854	NM_004439.5	621	tGt/tTt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066435	94066435	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	37	249	0	ENST00000369303.4:c.1324G>A	p.Ala442Thr	p.A442T	ENST00000369303	NM_004440.3	442	Gct/Act																																																																															
TEK	7010	MSKCC	GRCh37	9	27212860	27212860	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	51	678	0	ENST00000380036.4:c.2842G>C	p.Val948Leu	p.V948L	ENST00000380036	NM_000459.3	948	Gtg/Ctg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	264	629	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026708	6026708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	281	659	1	ENST00000265849.7:c.1688G>T	p.Arg563Leu	p.R563L	ENST00000265849	NM_000535.5	563	cGa/cTa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	195	345	0	ENST00000244661.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000244661	NM_003537.3	74	Gaa/Caa																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	143	261	0	ENST00000257430.4:c.4037C>G	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tGa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	199	486	0	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225422552	225422552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	57	310	1	ENST00000264414.4:c.88G>T	p.Val30Leu	p.V30L	ENST00000264414	NM_003590.4	30	Gta/Tta																																																																															
STK11	6794	MSKCC	GRCh37	19	1207105	1207105	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	305	698	0	ENST00000326873.7:c.193G>T	p.Glu65Ter	p.E65*	ENST00000326873	NM_000455.4	65	Gag/Tag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212522509	212522509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	84	444	0	ENST00000342788.4:c.1916C>T	p.Thr639Met	p.T639M	ENST00000342788	NM_005235.2	639	aCg/aTg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396516	30396516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	129	400	0	ENST00000331968.5:c.203C>T	p.Ser68Leu	p.S68L	ENST00000331968	NM_002742.2	68	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	140	495	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
MYCN	4613	MSKCC	GRCh37	2	16082599	16082599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	81	197	0	ENST00000281043.3:c.413G>A	p.Arg138His	p.R138H	ENST00000281043	NM_005378.4	138	cGc/cAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11199414	11199414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	262	559	0	ENST00000361445.4:c.5077C>T	p.His1693Tyr	p.H1693Y	ENST00000361445	NM_004958.3	1693	Cac/Tac																																																																															
CDC42	998	MSKCC	GRCh37	1	22413244	22413244	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	20	43	0	ENST00000344548.3:c.371C>G	p.Ser124Cys	p.S124C	ENST00000344548	NM_001039802.1	124	tCt/tGt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462948	120462948	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	200	488	0	ENST00000256646.2:c.5383G>C	p.Glu1795Gln	p.E1795Q	ENST00000256646	NM_024408.3	1795	Gaa/Caa																																																																															
WT1	7490	MSKCC	GRCh37	11	32456773	32456773	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	131	469	3	ENST00000332351.3:c.119G>A	p.Trp40Ter	p.W40*	ENST00000332351	NM_024426.4	40	tGg/tAg																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588819	69588819	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	179	637	1	ENST00000168712.1:c.417G>T	p.Met139Ile	p.M139I	ENST00000168712	NM_002007.2	139	atG/atT																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641492	18641492	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	112	550	1	ENST00000266497.5:c.2491G>T	p.Glu831Ter	p.E831*	ENST00000266497		831	Gag/Tag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435065	110435065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	210	557	1	ENST00000375856.3:c.3336G>T	p.Glu1112Asp	p.E1112D	ENST00000375856	NM_003749.2	1112	gaG/gaT																																																																															
MGA	23269	MSKCC	GRCh37	15	42059047	42059047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	179	426	0	ENST00000219905.7:c.8767C>T	p.Pro2923Ser	p.P2923S	ENST00000219905	NM_001164273.1	2923	Cca/Tca																																																																															
BLM	641	MSKCC	GRCh37	15	91304415	91304415	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	219	494	0	ENST00000355112.3:c.1812G>T	p.Lys604Asn	p.K604N	ENST00000355112	NM_000057.2	604	aaG/aaT																																																																															
TSC2	7249	MSKCC	GRCh37	16	2098705	2098705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	126	617	0	ENST00000219476.3:c.89C>T	p.Ser30Phe	p.S30F	ENST00000219476	NM_000548.3	30	tCt/tTt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2108852	2108852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	96	601	0	ENST00000219476.3:c.953C>T	p.Ser318Phe	p.S318F	ENST00000219476	NM_000548.3	318	tCt/tTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827277	72827277	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	137	585	0	ENST00000268489.5:c.9304G>C	p.Asp3102His	p.D3102H	ENST00000268489	NM_006885.3	3102	Gac/Cac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075208	16075208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	224	540	0	ENST00000268712.3:c.344C>G	p.Ser115Cys	p.S115C	ENST00000268712	NM_006311.3	115	tCt/tGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29664473	29664473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	140	621	1	ENST00000358273.4:c.6515C>T	p.Ser2172Leu	p.S2172L	ENST00000358273	NM_001042492.2	2172	tCa/tTa																																																																															
YES1	7525	MSKCC	GRCh37	18	742956	742956	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	313	574	0	ENST00000314574.4:c.1022A>G	p.Glu341Gly	p.E341G	ENST00000314574	NM_005433.3	341	gAa/gGa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575200	48575200	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	96	397	0	ENST00000342988.3:c.394C>G	p.His132Asp	p.H132D	ENST00000342988	NM_005359.5	132	Cac/Gac																																																																															
STK11	6794	MSKCC	GRCh37	19	1223132	1223132	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	270	630	0	ENST00000326873.7:c.1069G>C	p.Glu357Gln	p.E357Q	ENST00000326873	NM_000455.4	357	Gag/Cag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2180711	2180711	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	266	569	1	ENST00000398665.3:c.82-1G>T		p.X28_splice	ENST00000398665	NM_032482.2	28																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5243960	5243960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	223	520	0	ENST00000357368.4:c.1522G>T	p.Gly508Cys	p.G508C	ENST00000357368	NM_002850.3	508	Ggc/Tgc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105503	11105503	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	192	484	0	ENST00000344626.4:c.1420-1G>T		p.X474_splice	ENST00000344626	NM_003072.3	474																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212248362	212248362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	76	268	0	ENST00000342788.4:c.3905G>A	p.Arg1302Lys	p.R1302K	ENST00000342788	NM_005235.2	1302	aGa/aAa																																																																															
INHA	3623	MSKCC	GRCh37	2	220440233	220440233	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	137	664	1	ENST00000243786.2:c.1086C>A	p.His362Gln	p.H362Q	ENST00000243786	NM_002191.3	362	caC/caA																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944527	40944527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	130	580	0	ENST00000373198.4:c.1975G>T	p.Asp659Tyr	p.D659Y	ENST00000373198	NM_133170.3	659	Gat/Tat																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121033	29121033	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	314	641	0	ENST00000328354.6:c.524T>C	p.Val175Ala	p.V175A	ENST00000328354	NM_007194.3	175	gTa/gCa																																																																															
TP63	8626	MSKCC	GRCh37	3	189582070	189582070	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	247	570	0	ENST00000264731.3:c.629C>A	p.Pro210His	p.P210H	ENST00000264731	NM_003722.4	210	cCc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250862	153250862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	210	547	0	ENST00000281708.4:c.1198G>A	p.Asp400Asn	p.D400N	ENST00000281708	NM_033632.3	400	Gac/Aac																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950435	38950435	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	205	431	0	ENST00000357387.3:c.3515C>G	p.Thr1172Ser	p.T1172S	ENST00000357387	NM_152756.3	1172	aCt/aGt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517466	176517466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	243	634	2	ENST00000292408.4:c.167G>T	p.Cys56Phe	p.C56F	ENST00000292408	NM_213647.1	56	tGc/tTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056706	180056706	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	215	539	2	ENST00000261937.6:c.806C>A	p.Pro269Gln	p.P269Q	ENST00000261937	NM_182925.4	269	cCa/cAa																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983286	149983286	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	313	615	0	ENST00000253339.5:c.2972G>T	p.Gly991Val	p.G991V	ENST00000253339		991	gGa/gTa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163775	152163775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	103	531	1	ENST00000206249.3:c.496G>A	p.Ala166Thr	p.A166T	ENST00000206249	NM_000125.3	166	Gcc/Acc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265452	152265452	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	218	536	0	ENST00000206249.3:c.905A>T	p.Lys302Met	p.K302M	ENST00000206249	NM_000125.3	302	aAg/aTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953041	2953041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	238	627	1	ENST00000396946.4:c.2899C>A	p.Arg967Ser	p.R967S	ENST00000396946	NM_032415.4	967	Cgc/Agc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467634	50467634	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	98	367	0	ENST00000331340.3:c.869A>G	p.Asp290Gly	p.D290G	ENST00000331340	NM_006060.4	290	gAc/gGc																																																																															
HGF	3082	MSKCC	GRCh37	7	81334963	81334963	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	118	500	1	ENST00000222390.5:c.1864T>A	p.Leu622Met	p.L622M	ENST00000222390	NM_000601.4	622	Ttg/Atg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508509	106508509	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	90	237	0	ENST00000359195.3:c.503T>A	p.Val168Glu	p.V168E	ENST00000359195	NM_002649.2	168	gTg/gAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151849873	151849874	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	184	404	0	ENST00000262189.6:c.12442_12443delinsTT	p.Pro4148Leu	p.P4148L	ENST00000262189	NM_170606.2	4148	CCg/TTg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371682	55371684	+	missense_variant	Missense_Mutation	ONP	GCG	GCG	TGC			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	84	542	1	ENST00000297316.4:c.372_374delinsTGC	p.Arg125Ala	p.R125A	ENST00000297316	NM_022454.3	124	ctGCGc/ctTGCc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371726	55371726	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	80	437	0	ENST00000297316.4:c.416C>G	p.Pro139Arg	p.P139R	ENST00000297316	NM_022454.3	139	cCg/cGg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68981334	68981334	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	152	558	0	ENST00000288368.4:c.1406T>G	p.Phe469Cys	p.F469C	ENST00000288368	NM_024870.2	469	tTt/tGt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980726	70980726	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	190	641	0	ENST00000276594.2:c.742C>T	p.Gln248Ter	p.Q248*	ENST00000276594	NM_024504.3	248	Caa/Taa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040965	47040965	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	123	622	0	ENST00000329236.7:c.1261G>T	p.Ala421Ser	p.A421S	ENST00000329236	NM_001204466.1	421	Gcc/Tcc																																																																															
ATRX	546	MSKCC	GRCh37	X	76939274	76939274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	139	689	0	ENST00000373344.5:c.1474G>A	p.Glu492Lys	p.E492K	ENST00000373344	NM_000489.3	492	Gaa/Aaa																																																																															
ATRX	546	MSKCC	GRCh37	X	76954118	76954118	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	109	501	0	ENST00000373344.5:c.134-1G>C		p.X45_splice	ENST00000373344	NM_000489.3	45																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36223726	36223727	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	559	722	0	ENST00000222270.7:c.6276_6277delinsT	p.Ala2093GlnfsTer26	p.A2093Qfs*26	ENST00000222270	NM_014727.1	2092	cgGGca/cgTca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0026188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	23	494	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845633	72845633	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1085	86	483	0	ENST00000268489.5:c.3707A>T	p.Asn1236Ile	p.N1236I	ENST00000268489	NM_006885.3	1236	aAc/aTc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0026191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	154	591	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	92	569	3	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089499	27089499	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	83	622	1	ENST00000324856.7:c.2457del	p.Asn820MetfsTer13	p.N820Mfs*13	ENST00000324856	NM_006015.4	819	Ccc/cc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982411	201982411	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	83	629	0	ENST00000359651.3:c.790A>C	p.Lys264Gln	p.K264Q	ENST00000359651		264	Aag/Cag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115713	8115888	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTCCTCCCTGAGCCACATCTCGCCCTTCAGCCACT	CCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTCCTCCCTGAGCCACATCTCGCCCTTCAGCCACT	-			P-0026191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	94	378	0	ENST00000346208.3:c.1061_1236del	p.Leu354GlnfsTer94	p.L354Qfs*94	ENST00000346208		353	ccCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTCCTCCCTGAGCCACATCTCGCCCTTCAGCCACTcc/cccc																																																																															
CCND1	595	MSKCC	GRCh37	11	69457809	69457809	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	46	269	0	ENST00000227507.2:c.209A>C	p.Glu70Ala	p.E70A	ENST00000227507	NM_053056.2	70	gAa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7573922	7573977	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCACCTGGAGTGAGCCCTGCTCCCCCCTGGCTCCTTCCCAGCCTGGGCATCCTTG	CTCACCTGGAGTGAGCCCTGCTCCCCCCTGGCTCCTTCCCAGCCTGGGCATCCTTG	-			P-0026191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	130	428	0	ENST00000269305.4:c.1050_1100+5del		p.X350_splice	ENST00000269305	NM_001126112.2	350																																																																																
MST1	4485	MSKCC	GRCh37	3	49721531	49721531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	66	547	0	ENST00000449682.2:c.2108G>T	p.Arg703Leu	p.R703L	ENST00000449682	NM_020998.3	703	cGc/cTc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265645	152265645	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0026191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	62	333	0	ENST00000206249.3:c.1096+2T>C		p.X366_splice	ENST00000206249	NM_000125.3	366																																																																																
PTEN	5728	MSKCC	GRCh37	10	89685314	89685315	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TG	TG	-			P-0026192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	162	436	0	ENST00000371953.3:c.209+1_209+2del		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																																
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0026192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	260	691	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922301	178922301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	203	535	0	ENST00000263967.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000263967	NM_006218.2	357	cGa/cAa																																																																															
CDK8	1024	MSKCC	GRCh37	13	26911754	26911754	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	339	610	0	ENST00000381527.3:c.179C>A	p.Ser60Tyr	p.S60Y	ENST00000381527	NM_001260.1	60	tCt/tAt																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945648	54945648	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	51	257	0	ENST00000312783.6:c.922G>T	p.Glu308Ter	p.E308*	ENST00000312783	NM_198436.1	308	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0026196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	123	572	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	114	567	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	146	665	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	214	568	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	26	505	0	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	109	622	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	135	601	2	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	406317	406318	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	221	729	0	ENST00000399788.2:c.4123dup	p.Cys1375LeufsTer2	p.C1375Lfs*2	ENST00000399788	NM_001042603.1	1375	tgt/tTgt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953632	32953633	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	115	527	0	ENST00000380152.3:c.8940dupA	p.Glu2981ArgfsTer37	p.E2981Rfs*37	ENST00000380152		2978	tca/tcAa																																																																															
BCL6	604	MSKCC	GRCh37	3	187446269	187446270	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	130	619	0	ENST00000232014.4:c.1418dupC	p.Lys474GlufsTer26	p.K474Efs*26	ENST00000232014	NM_001130845.1	473	ccg/ccCg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	127	709	4	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	149	662	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	68	272	1	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81554355	81554355	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	107	586	0	ENST00000298171.2:c.379del	p.Leu127SerfsTer2	p.L127Sfs*2	ENST00000298171	NM_000369.2	125	ctC/ct																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	46	408	1	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	90	419	6	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781141	135781141	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	163	679	0	ENST00000298552.3:c.1824del	p.Phe608LeufsTer21	p.F608Lfs*21	ENST00000298552	NM_001162426.1	608	ttT/tt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	185	744	5	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117594	70117594	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	150	519	2	ENST00000245479.2:c.66del	p.Ser23AlafsTer38	p.S23Afs*38	ENST00000245479	NM_000346.3	21	gCc/gc																																																																															
BRAF	673	MSKCC	GRCh37	7	140434413	140434413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	127	582	0	ENST00000288602.6:c.2285C>T	p.Ala762Val	p.A762V	ENST00000288602	NM_004333.4	762	gCg/gTg																																																																															
PARP1	142	MSKCC	GRCh37	1	226567647	226567647	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	134	588	2	ENST00000366794.5:c.1519delA	p.Ser507AlafsTer17	p.S507Afs*17	ENST00000366794	NM_001618.3	507	Agc/gc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884908	134884908	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202034365		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	125	534	0	ENST00000398015.3:c.1684G>A	p.Val562Ile	p.V562I	ENST00000398015	NM_004441.4	562	Gtc/Atc																																																																															
JUN	3725	MSKCC	GRCh37	1	59248123	59248123	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	30	100	0	ENST00000371222.2:c.620C>A	p.Pro207Gln	p.P207Q	ENST00000371222	NM_002228.3	207	cCg/cAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	196	585	2	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																																																															
CRKL	1399	MSKCC	GRCh37	22	21304066	21304066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	203	703	2	ENST00000354336.3:c.845G>A	p.Arg282His	p.R282H	ENST00000354336	NM_005207.3	282	cGc/cAc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	229	892	13	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993731	72993731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	63	423	4	ENST00000268489.5:c.314del	p.Pro105ArgfsTer4	p.P105Rfs*4	ENST00000268489	NM_006885.3	105	cCg/cg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259043	16259043	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	137	655	0	ENST00000375759.3:c.6313delG	p.Ala2105LeufsTer33	p.A2105Lfs*33	ENST00000375759	NM_015001.2	2103	aGg/ag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	115	639	0	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																															
BTK	695	MSKCC	GRCh37	X	100630173	100630173	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141488935		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	38	669	0	ENST00000308731.7:c.100G>A	p.Val34Met	p.V34M	ENST00000308731	NM_000061.2	34	Gtg/Atg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468282	50468282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	144	657	0	ENST00000331340.3:c.1517C>T	p.Ser506Leu	p.S506L	ENST00000331340	NM_006060.4	506	tCg/tTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	131	551	3	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
ATR	545	MSKCC	GRCh37	3	142242899	142242899	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750252420		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	176	683	1	ENST00000350721.4:c.4088C>T	p.Ala1363Val	p.A1363V	ENST00000350721	NM_001184.3	1363	gCg/gTg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549394	21549394	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148935054		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	97	484	1	ENST00000382592.4:c.2882G>A	p.Arg961Gln	p.R961Q	ENST00000382592	NM_014572.2	961	cGg/cAg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57466824	57466826	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	100	350	0	ENST00000371085.3:c.46_48del	p.Glu16del	p.E16del	ENST00000371085	NM_000516.4	15	GAG/-																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213243	39213243	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	177	787	1	ENST00000402219.2:c.3724del	p.Ser1242ValfsTer37	p.S1242Vfs*37	ENST00000402219	NM_005633.3	1242	Agt/gt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375152	118375152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	95	474	0	ENST00000534358.1:c.8545C>T	p.Pro2849Ser	p.P2849S	ENST00000534358	NM_005933.3	2849	Cct/Tct																																																																															
CD276	80381	MSKCC	GRCh37	15	73994829	73994829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	33	229	1	ENST00000318443.5:c.313G>A	p.Ala105Thr	p.A105T	ENST00000318443	NM_001024736.1	105	Gca/Aca																																																																															
MTOR	2475	MSKCC	GRCh37	1	11303302	11303304	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	202	767	1	ENST00000361445.4:c.1279_1281del	p.Glu427del	p.E427del	ENST00000361445	NM_004958.3	427	GAG/-																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256232	16256232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	173	743	1	ENST00000375759.3:c.3497C>T	p.Thr1166Met	p.T1166M	ENST00000375759	NM_015001.2	1166	aCg/aTg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162743365	162743365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	108	434	0	ENST00000367921.3:c.1835C>T	p.Ala612Val	p.A612V	ENST00000367921	NM_006182.2	612	gCa/gTa																																																																															
NUF2	83540	MSKCC	GRCh37	1	163295914	163295914	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	160	855	1	ENST00000271452.3:c.73G>T	p.Gly25Ter	p.G25*	ENST00000271452	NM_145697.2	25	Gga/Tga																																																																															
TET1	80312	MSKCC	GRCh37	10	70451480	70451480	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	183	771	0	ENST00000373644.4:c.6320A>G	p.His2107Arg	p.H2107R	ENST00000373644	NM_030625.2	2107	cAt/cGt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88659599	88659599	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	187	657	0	ENST00000372037.3:c.382A>G	p.Asn128Asp	p.N128D	ENST00000372037	NM_004329.2	128	Aat/Gat																																																																															
PGR	5241	MSKCC	GRCh37	11	100998234	100998234	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	65	358	0	ENST00000325455.5:c.1568T>C	p.Leu523Pro	p.L523P	ENST00000325455	NM_001202474.3	523	cTc/cCc																																																																															
RAD52	5893	MSKCC	GRCh37	12	1023182	1023182	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	148	650	0	ENST00000358495.3:c.1073T>C	p.Leu358Ser	p.L358S	ENST00000358495	NM_134424.2	358	tTa/tCa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495660	56495660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	127	546	1	ENST00000267101.3:c.3850G>A	p.Ala1284Thr	p.A1284T	ENST00000267101	NM_001982.3	1284	Gca/Aca																																																																															
MSI1	4440	MSKCC	GRCh37	12	120806011	120806011	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	142	648	1	ENST00000257552.2:c.166del	p.Leu56Ter	p.L56*	ENST00000257552	NM_002442.3	56	Ctg/tg																																																																															
POLE	5426	MSKCC	GRCh37	12	133240687	133240687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	32	727	0	ENST00000320574.5:c.2609A>G	p.Asn870Ser	p.N870S	ENST00000320574	NM_006231.2	870	aAc/aGc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435790	110435790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	10	232	2	ENST00000375856.3:c.2611C>T	p.Arg871Trp	p.R871W	ENST00000375856	NM_003749.2	871	Cgg/Tgg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437532	110437532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	126	644	0	ENST00000375856.3:c.869C>T	p.Ala290Val	p.A290V	ENST00000375856	NM_003749.2	290	gCc/gTc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30133062	30133062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	91	432	0	ENST00000331968.5:c.539G>A	p.Cys180Tyr	p.C180Y	ENST00000331968	NM_002742.2	180	tGt/tAt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986898	36986898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	100	314	3	ENST00000354822.5:c.791G>A	p.Gly264Asp	p.G264D	ENST00000354822	NM_001079668.2	264	gGc/gAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42002990	42002990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	172	749	0	ENST00000219905.7:c.2527G>A	p.Gly843Ser	p.G843S	ENST00000219905	NM_001164273.1	843	Ggt/Agt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632600	3632600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	33	786	1	ENST00000294008.3:c.5248G>A	p.Ala1750Thr	p.A1750T	ENST00000294008	NM_032444.2	1750	Gcg/Acg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778167	3778167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	133	685	1	ENST00000262367.5:c.6881G>A	p.Arg2294Gln	p.R2294Q	ENST00000262367	NM_004380.2	2294	cGg/cAg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029286	14029286	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	127	456	0	ENST00000311895.7:c.1500del	p.Lys500AsnfsTer19	p.K500Nfs*19	ENST00000311895	NM_005236.2	499	ggA/gg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953241	81953241	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	120	413	1	ENST00000359376.3:c.2211del	p.Glu738SerfsTer12	p.E738Sfs*12	ENST00000359376	NM_002661.3	736	aCc/ac																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357465	89357465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	161	721	0	ENST00000301030.4:c.353C>T	p.Ala118Val	p.A118V	ENST00000301030	NM_001256183.1	118	gCc/gTc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15952264	15952264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	185	771	0	ENST00000268712.3:c.6431C>T	p.Ser2144Leu	p.S2144L	ENST00000268712	NM_006311.3	2144	tCg/tTg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489501	40489501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	141	661	0	ENST00000264657.5:c.749C>T	p.Ala250Val	p.A250V	ENST00000264657	NM_139276.2	250	gCc/gTc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41234583	41234583	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	38	587	0	ENST00000357654.3:c.4195A>G	p.Thr1399Ala	p.T1399A	ENST00000357654	NM_007294.3	1399	Acc/Gcc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58711218	58711218	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	159	613	1	ENST00000305921.3:c.706A>G	p.Met236Val	p.M236V	ENST00000305921	NM_003620.3	236	Atg/Gtg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119773	70119803	+	frameshift_variant	Frame_Shift_Del	DEL	TTGCCAGAGGGGGGCAGACAGCCCCCTATCG	TTGCCAGAGGGGGGCAGACAGCCCCCTATCG	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	140	604	0	ENST00000245479.2:c.775_805del	p.Leu259ThrfsTer10	p.L259Tfs*10	ENST00000245479	NM_000346.3	259	TTGCCAGAGGGGGGCAGACAGCCCCCTATCGac/ac																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732278	74732278	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	76	348	0	ENST00000359995.5:c.631A>G	p.Lys211Glu	p.K211E	ENST00000359995	NM_001195427.1	211	Aag/Gag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226433	2226433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	137	737	2	ENST00000398665.3:c.3913G>A	p.Gly1305Arg	p.G1305R	ENST00000398665	NM_032482.2	1305	Gga/Aga																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14629007	14629007	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	133	596	0	ENST00000254322.2:c.155A>G	p.Tyr52Cys	p.Y52C	ENST00000254322	NM_006145.1	52	tAc/tGc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15300195	15300195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	174	755	1	ENST00000263388.2:c.1081C>A	p.His361Asn	p.H361N	ENST00000263388	NM_000435.2	361	Cac/Aac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302570	15302570	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	132	665	1	ENST00000263388.2:c.788C>A	p.Pro263His	p.P263H	ENST00000263388	NM_000435.2	263	cCt/cAt																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17387345	17387345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	177	805	0	ENST00000359435.4:c.611C>T	p.Thr204Met	p.T204M	ENST00000359435	NM_001033549.1	204	aCg/aTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221657	36221657	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	171	801	0	ENST00000222270.7:c.5326T>C	p.Tyr1776His	p.Y1776H	ENST00000222270	NM_014727.1	1776	Tat/Cat																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223319	36223327	+	inframe_deletion	In_Frame_Del	DEL	GAGCTGGCT	GAGCTGGCT	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	155	839	0	ENST00000222270.7:c.5869_5877del	p.Glu1957_Ala1959del	p.E1957_A1959del	ENST00000222270	NM_014727.1	1957	GAGCTGGCT/-																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967156	25967156	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201808592		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	65	378	0	ENST00000435504.4:c.2050G>A	p.Ala684Thr	p.A684T	ENST00000435504		684	Gcc/Acc																																																																															
REL	5966	MSKCC	GRCh37	2	61121628	61121628	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	172	738	0	ENST00000295025.8:c.250T>G	p.Cys84Gly	p.C84G	ENST00000295025	NM_002908.2	84	Tgc/Ggc																																																																															
REL	5966	MSKCC	GRCh37	2	61145678	61145678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	107	634	0	ENST00000295025.8:c.790C>T	p.Arg264Trp	p.R264W	ENST00000295025	NM_002908.2	264	Cgg/Tgg																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881602	111881602	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	158	690	0	ENST00000393256.3:c.280A>G	p.Ser94Gly	p.S94G	ENST00000393256	NM_006538.4	94	Agt/Ggt																																																																															
ACVR1	90	MSKCC	GRCh37	2	158617541	158617541	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	129	574	0	ENST00000263640.3:c.1115A>G	p.Asn372Ser	p.N372S	ENST00000263640	NM_001105.4	372	aAc/aGc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212289016	212289016	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	69	519	0	ENST00000342788.4:c.2730A>G	p.Ile910Met	p.I910M	ENST00000342788	NM_005235.2	910	atA/atG																																																																															
INHA	3623	MSKCC	GRCh37	2	220440141	220440141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	98	714	0	ENST00000243786.2:c.994C>A	p.Pro332Thr	p.P332T	ENST00000243786	NM_002191.3	332	Cca/Aca																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662980	227662980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	91	629	0	ENST00000305123.5:c.475G>A	p.Ala159Thr	p.A159T	ENST00000305123	NM_005544.2	159	Gca/Aca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827985	40827985	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	25	505	1	ENST00000373198.4:c.2443A>G	p.Arg815Gly	p.R815G	ENST00000373198	NM_133170.3	815	Agg/Ggg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40979322	40979322	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	120	690	0	ENST00000373198.4:c.1811A>G	p.Asp604Gly	p.D604G	ENST00000373198	NM_133170.3	604	gAc/gGc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46262920	46262920	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	146	673	0	ENST00000371998.3:c.1093T>C	p.Ser365Pro	p.S365P	ENST00000371998		365	Tca/Cca																																																																															
RAF1	5894	MSKCC	GRCh37	3	12633240	12633240	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	164	684	1	ENST00000251849.4:c.1160T>G	p.Phe387Cys	p.F387C	ENST00000251849	NM_002880.3	387	tTc/tGc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72866489	72866489	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	69	517	1	ENST00000325599.8:c.774T>A	p.Asn258Lys	p.N258K	ENST00000325599	NM_018130.2	258	aaT/aaA																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202842	128202842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	116	568	0	ENST00000341105.2:c.878G>A	p.Arg293Gln	p.R293Q	ENST00000341105	NM_032638.4	293	cGg/cAg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968200	134968200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	23	561	0	ENST00000398015.3:c.2713C>A	p.Arg905Ser	p.R905S	ENST00000398015	NM_004441.4	905	Cgc/Agc																																																																															
ATR	545	MSKCC	GRCh37	3	142281829	142281829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	163	606	0	ENST00000350721.4:c.415C>T	p.Pro139Ser	p.P139S	ENST00000350721	NM_001184.3	139	Cct/Tct																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170015161	170015161	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	151	714	1	ENST00000295797.4:c.1567C>T	p.Arg523Ter	p.R523*	ENST00000295797	NM_002740.5	523	Cga/Tga																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902713	1902713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	225	776	1	ENST00000382891.5:c.332C>A	p.Pro111His	p.P111H	ENST00000382891	NM_133335.3	111	cCc/cAc																																																																															
TET2	54790	MSKCC	GRCh37	4	106157282	106157282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	184	653	1	ENST00000380013.4:c.2183C>T	p.Ala728Val	p.A728V	ENST00000380013	NM_001127208.2	728	gCa/gTa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332817	153332817	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	159	590	0	ENST00000281708.4:c.139C>T	p.Gln47Ter	p.Q47*	ENST00000281708	NM_033632.3	47	Caa/Taa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629600	187629600	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	157	649	0	ENST00000441802.2:c.1382del	p.Pro461LeufsTer23	p.P461Lfs*23	ENST00000441802	NM_005245.3	461	cCt/ct																																																																															
APC	324	MSKCC	GRCh37	5	112177874	112177878	+	frameshift_variant	Frame_Shift_Del	DEL	TATAA	TATAA	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	90	408	0	ENST00000257430.4:c.6583_6587del	p.Tyr2195LysfsTer10	p.Y2195Kfs*10	ENST00000257430	NM_000038.5	2195	TATAAa/a																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056197	26056197	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs548795634		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	110	471	0	ENST00000343677.2:c.460A>G	p.Thr154Ala	p.T154A	ENST00000343677	NM_005319.3	154	Aca/Gca																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056286	26056286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	33	515	0	ENST00000343677.2:c.371G>A	p.Gly124Asp	p.G124D	ENST00000343677	NM_005319.3	124	gGc/gAc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288863	33288863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	112	447	0	ENST00000374542.5:c.689G>A	p.Arg230His	p.R230H	ENST00000374542	NM_001141970.1	230	cGt/cAt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2963940	2963941	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGA			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	106	756	0	ENST00000396946.4:c.1864_1866dup	p.Ser622dup	p.S622dup	ENST00000396946	NM_032415.4	622	-/TCC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55211142	55211142	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	81	631	0	ENST00000275493.2:c.385A>G	p.Lys129Glu	p.K129E	ENST00000275493	NM_005228.3	129	Aaa/Gaa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545632	106545632	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	37	673	0	ENST00000359195.3:c.3109A>G	p.Thr1037Ala	p.T1037A	ENST00000359195	NM_002649.2	1037	Aca/Gca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879429	151879429	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	151	605	0	ENST00000262189.6:c.5516del	p.Thr1839SerfsTer10	p.T1839Sfs*10	ENST00000262189	NM_170606.2	1839	aCg/ag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69009342	69009342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	126	679	1	ENST00000288368.4:c.2459G>A	p.Gly820Asp	p.G820D	ENST00000288368	NM_024870.2	820	gGt/gAt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8317917	8317917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	130	500	3	ENST00000356435.5:c.5696C>T	p.Ala1899Val	p.A1899V	ENST00000356435		1899	gCc/gTc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98242267	98242267	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	156	648	0	ENST00000331920.6:c.1051A>G	p.Thr351Ala	p.T351A	ENST00000331920	NM_000264.3	351	Act/Gct																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771998	135771998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	85	442	1	ENST00000298552.3:c.3119G>A	p.Ser1040Asn	p.S1040N	ENST00000298552	NM_001162426.1	1040	aGc/aAc																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20153854	20153854	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	148	580	0	ENST00000379607.5:c.204+2T>C		p.X68_splice	ENST00000379607	NM_001412.3	68																																																																																
AMER1	139285	MSKCC	GRCh37	X	63412406	63412406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	117	794	0	ENST00000330258.3:c.761C>T	p.Ala254Val	p.A254V	ENST00000330258	NM_152424.3	254	gCc/gTc																																																																															
ATRX	546	MSKCC	GRCh37	X	76944388	76944388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	197	869	0	ENST00000373344.5:c.517G>A	p.Ala173Thr	p.A173T	ENST00000373344	NM_000489.3	173	Gct/Act																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	141	678	0	ENST00000407977.2:c.349_350delinsA	p.Arg117ThrfsTer41	p.R117Tfs*41	ENST00000407977		117	CGc/Ac																																																																															
CIC	23152	MSKCC	GRCh37	19	42798191	42798191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	333	632	0	ENST00000575354.2:c.4145C>T	p.Ser1382Leu	p.S1382L	ENST00000575354	NM_015125.3	1382	tCa/tTa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859663	57859663	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	251	489	1	ENST00000228682.2:c.717G>A	p.Trp239Ter	p.W239*	ENST00000228682	NM_005269.2	239	tgG/tgA																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78923242	78923242	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0026198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	248	511	0	ENST00000306801.3:c.3266-1G>A		p.X1089_splice	ENST00000306801	NM_020761.2	1089																																																																																
PREX2	80243	MSKCC	GRCh37	8	69028127	69028127	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	334	709	1	ENST00000288368.4:c.3286G>T	p.Asp1096Tyr	p.D1096Y	ENST00000288368	NM_024870.2	1096	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0026201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	103	381	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739894	41739894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	51	285	1	ENST00000242208.4:c.79G>A	p.Glu27Lys	p.E27K	ENST00000242208	NM_002192.2	27	Gag/Aag																																																																															
WT1	7490	MSKCC	GRCh37	11	32456872	32456872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	36	333	0	ENST00000332351.3:c.20C>T	p.Thr7Met	p.T7M	ENST00000332351	NM_024426.4	7	aCg/aTg																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125525184	125525184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	34	416	0	ENST00000428830.2:c.1400G>A	p.Ser467Asn	p.S467N	ENST00000428830	NM_001114121.2	467	aGc/aAc																																																																															
BCL2	596	MSKCC	GRCh37	18	60795959	60795959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	40	442	4	ENST00000333681.4:c.619C>T	p.Arg207Trp	p.R207W	ENST00000333681		207	Cgg/Tgg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99162438	99162438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	33	296	0	ENST00000074304.5:c.956C>T	p.Ser319Leu	p.S319L	ENST00000074304	NM_001134224.1	319	tCg/tTg																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123480499	123480499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	30	179	0	ENST00000371139.4:c.7G>A	p.Ala3Thr	p.A3T	ENST00000371139	NM_001114937.2	3	Gca/Aca																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	190	470	0	ENST00000347630.2:c.397T>A	p.Phe133Ile	p.F133I	ENST00000347630	NM_001007230.1	133	Ttc/Atc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11022869	11022869	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	279	564	0	ENST00000327064.4:c.568G>T	p.Asp190Tyr	p.D190Y	ENST00000327064	NM_199141.1	190	Gat/Tat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55220275	55220275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	10	576	0	ENST00000275493.2:c.665G>A	p.Arg222His	p.R222H	ENST00000275493	NM_005228.3	222	cGc/cAc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882058	36882058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141574393		P-0026212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	28	516	2	ENST00000358127.4:c.955G>A	p.Val319Ile	p.V319I	ENST00000358127	NM_001280556.1	319	Gtc/Atc																																																																															
ATM	472	MSKCC	GRCh37	11	108218052	108218052	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	247	408	0	ENST00000278616.4:c.8631G>C	p.Leu2877Phe	p.L2877F	ENST00000278616	NM_000051.3	2877	ttG/ttC																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577576	64577576	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	144	235	0	ENST00000337652.1:c.6del	p.Leu3Ter	p.L3*	ENST00000337652	NM_130803.2	2	ggG/gg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45394796	45394796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	240	350	0	ENST00000262160.6:c.553G>A	p.Glu185Lys	p.E185K	ENST00000262160	NM_005901.5	185	Gag/Aag																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384655	31384655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	303	462	0	ENST00000328111.2:c.1357G>A	p.Gly453Arg	p.G453R	ENST00000328111	NM_006892.3	453	Ggg/Agg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0025850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	572	469	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	404911	404911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	175	503	2	ENST00000399788.2:c.4283G>A	p.Arg1428Gln	p.R1428Q	ENST00000399788	NM_001042603.1	1428	cGa/cAa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060696	38060697	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0025850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	421	831	0	ENST00000250448.2:c.1292_1293del	p.Ser431TyrfsTer126	p.S431Yfs*126	ENST00000250448	NM_004496.3	431	tCT/t																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061185	38061185	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	172	274	0	ENST00000250448.2:c.804C>G	p.Cys268Trp	p.C268W	ENST00000250448	NM_004496.3	268	tgC/tgG																																																																															
CDH1	999	MSKCC	GRCh37	16	68847382	68847382	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	359	528	0	ENST00000261769.5:c.1307del	p.Leu436Ter	p.L436*	ENST00000261769	NM_004360.3	435	aTt/at																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177871	56177875	+	frameshift_variant	Frame_Shift_Del	DEL	AACAG	AACAG	-			P-0025850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	180	361	0	ENST00000399503.3:c.2845_2849del	p.Thr949AlafsTer53	p.T949Afs*53	ENST00000399503	NM_005921.1	948	acAACAGag/acag																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0025852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	240	825	0	ENST00000397752.3:c.3028+1G>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31401640	31401640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	47	495	1	ENST00000344624.3:c.4024C>T	p.Arg1342Trp	p.R1342W	ENST00000344624		1342	Cgg/Tgg																																																																															
BTK	695	MSKCC	GRCh37	X	100614298	100614298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	44	555	0	ENST00000308731.7:c.877del	p.Gln293AsnfsTer3	p.Q293Nfs*3	ENST00000308731	NM_000061.2	293	Caa/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	68	557	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	108	764	0	ENST00000269305.4:c.820G>C	p.Val274Leu	p.V274L	ENST00000269305	NM_001126112.2	274	Gtt/Ctt																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281257	49281291	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAATTGGATATTTGGAGACCTGGCCTGCAGGAT	TCCAATTGGATATTTGGAGACCTGGCCTGCAGGAT	-			P-0025856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	178	695	2	ENST00000282018.3:c.305_339del	p.Ser102TyrfsTer66	p.S102Yfs*66	ENST00000282018	NM_020377.2	102	TCCAATTGGATATTTGGAGACCTGGCCTGCAGGATt/t																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010533	48010544	+	inframe_deletion	In_Frame_Del	DEL	GGCCTGGGCCCA	GGCCTGGGCCCA	-			P-0025856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	51	282	0	ENST00000234420.5:c.165_176del	p.Gly56_Pro59del	p.G56_P59del	ENST00000234420	NM_000179.2	54	gGGCCTGGGCCCAgg/ggg																																																																															
SRC	6714	MSKCC	GRCh37	20	36028530	36028530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	84	726	1	ENST00000358208.4:c.872G>A	p.Gly291Asp	p.G291D	ENST00000358208		291	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0025858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	84	388	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0025858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1991	174	471	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115722	8115724	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0025858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	125	302	1	ENST00000346208.3:c.1072_1074del	p.Lys358del	p.K358del	ENST00000346208		356	atGAAg/atg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805104	89805104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	138	334	2	ENST00000389301.3:c.4273C>T	p.Arg1425Cys	p.R1425C	ENST00000389301	NM_000135.2	1425	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	46	442	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	52	338	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
MGA	23269	MSKCC	GRCh37	15	42046766	42046766	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	67	451	1	ENST00000219905.7:c.7139+1G>A		p.X2380_splice	ENST00000219905	NM_001164273.1	2380																																																																																
BCL2	596	MSKCC	GRCh37	18	60985802	60985802	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	38	238	0	ENST00000333681.4:c.98G>C	p.Gly33Ala	p.G33A	ENST00000333681		33	gGa/gCa																																																																															
TET1	80312	MSKCC	GRCh37	10	70406013	70406013	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	87	563	0	ENST00000373644.4:c.3529del	p.Glu1177LysfsTer15	p.E1177Kfs*15	ENST00000373644	NM_030625.2	1176	tGg/tg																																																																															
NF1	4763	MSKCC	GRCh37	17	29508438	29508438	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	46	317	0	ENST00000358273.4:c.587-2A>G		p.X196_splice	ENST00000358273	NM_001042492.2	196																																																																																
NF1	4763	MSKCC	GRCh37	17	29653159	29653159	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	35	269	0	ENST00000358273.4:c.5157A>G	p.Ile1719Met	p.I1719M	ENST00000358273	NM_001042492.2	1719	atA/atG																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40353757	40353757	+	stop_lost	Nonstop_Mutation	SNP	C	C	A			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	40	431	0	ENST00000293328.3:c.2363G>T	p.Ter788LeuextTer25	p.*788Lext*25	ENST00000293328	NM_012448.3	788	tGa/tTa																																																																															
EZH1	2145	MSKCC	GRCh37	17	40864369	40864370	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	100	578	3	ENST00000428826.2:c.1338_1339delinsAT	p.His446_Gly447delinsGlnCys	p.H446_G447delinsQC	ENST00000428826		446	caTGgc/caATgc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39637960	39637960	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	95	512	0	ENST00000262039.4:c.2377G>T	p.Glu793Ter	p.E793*	ENST00000262039	NM_002647.2	793	Gag/Tag																																																																															
ALK	238	MSKCC	GRCh37	2	29541234	29541235	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	78	486	2	ENST00000389048.3:c.1582_1583delinsTT	p.Ala528Phe	p.A528F	ENST00000389048	NM_004304.4	528	GCt/TTt																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43749823	43749823	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	55	284	0	ENST00000523873.1:c.676A>T	p.Arg226Ter	p.R226*	ENST00000523873		226	Aga/Tga																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94128986	94128986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	67	390	0	ENST00000369303.4:c.74G>T	p.Gly25Val	p.G25V	ENST00000369303	NM_004440.3	25	gGg/gTg																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005209	150005209	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	36	370	1	ENST00000253339.5:c.1016A>T	p.Asn339Ile	p.N339I	ENST00000253339		339	aAc/aTc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222749	53222749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	91	658	0	ENST00000375401.3:c.4187G>T	p.Arg1396Leu	p.R1396L	ENST00000375401	NM_004187.3	1396	cGg/cTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410463	63410463	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	67	525	0	ENST00000330258.3:c.2704C>A	p.Leu902Met	p.L902M	ENST00000330258	NM_152424.3	902	Ctg/Atg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410537	63410537	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	80	541	0	ENST00000330258.3:c.2630G>T	p.Gly877Val	p.G877V	ENST00000330258	NM_152424.3	877	gGc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	87	494	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0025951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	125	530	2	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41197783	41197783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	61	489	1	ENST00000357654.3:c.5504G>A	p.Arg1835Gln	p.R1835Q	ENST00000357654	NM_007294.3	1835	cGa/cAa																																																																															
RHOA	387	MSKCC	GRCh37	3	49397740	49397740	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	121	529	0	ENST00000418115.1:c.484A>G	p.Lys162Glu	p.K162E	ENST00000418115	NM_001664.2	162	Aag/Gag																																																																															
PRDM1	639	MSKCC	GRCh37	6	106547329	106547329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	94	425	1	ENST00000369096.4:c.566C>T	p.Pro189Leu	p.P189L	ENST00000369096	NM_001198.3	189	cCc/cTc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223487	53223487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	114	441	2	ENST00000375401.3:c.3872G>A	p.Arg1291His	p.R1291H	ENST00000375401	NM_004187.3	1291	cGc/cAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177626	56177626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	158	337	0	ENST00000399503.3:c.2599G>A	p.Glu867Lys	p.E867K	ENST00000399503	NM_005921.1	867	Gaa/Aaa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	49	186	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
JAK1	3716	MSKCC	GRCh37	1	65321245	65321245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	232	467	0	ENST00000342505.4:c.1595G>A	p.Arg532His	p.R532H	ENST00000342505	NM_002227.2	532	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692791	89692791	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	180	292	0	ENST00000371953.3:c.275A>G	p.Asp92Gly	p.D92G	ENST00000371953	NM_000314.4	92	gAc/gGc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157469823	157469823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	231	565	0	ENST00000346085.5:c.2617G>A	p.Gly873Ser	p.G873S	ENST00000346085	NM_020732.3	873	Ggt/Agt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103828	47103828	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	316	335	1	ENST00000409792.3:c.6118C>T	p.Arg2040Ter	p.R2040*	ENST00000409792	NM_014159.6	2040	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821890	72821890	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	189	322	3	ENST00000268489.5:c.10285del	p.Arg3429ValfsTer56	p.R3429Vfs*56	ENST00000268489	NM_006885.3	3429	Cgt/gt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022592	31022592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	239	502	0	ENST00000375687.4:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000375687	NM_015338.5	693	Cga/Tga																																																																															
MST1R	4486	MSKCC	GRCh37	3	49932714	49932714	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144584611		P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	287	703	1	ENST00000296474.3:c.3157C>T	p.Arg1053Trp	p.R1053W	ENST00000296474	NM_002447.2	1053	Cgg/Tgg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31372633	31372633	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149520896		P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	224	518	1	ENST00000328111.2:c.274C>T	p.Arg92Trp	p.R92W	ENST00000328111	NM_006892.3	92	Cgg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385183	41385183	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1423243089		P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	261	516	2	ENST00000373198.4:c.778C>T	p.Arg260Trp	p.R260W	ENST00000373198	NM_133170.3	260	Cgg/Tgg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374251	138374251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	247	420	0	ENST00000289153.2:c.3193C>T	p.Arg1065Trp	p.R1065W	ENST00000289153	NM_006219.2	1065	Cgg/Tgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993013	72993014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	377	673	0	ENST00000268489.5:c.1031dup	p.Asn344LysfsTer13	p.N344Kfs*13	ENST00000268489	NM_006885.3	344	aac/aaAc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561424	9561424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	229	382	1	ENST00000353224.5:c.358G>A	p.Ala120Thr	p.A120T	ENST00000353224	NM_177990.2	120	Gcg/Acg																																																																															
MGA	23269	MSKCC	GRCh37	15	42052626	42052626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	224	418	1	ENST00000219905.7:c.7297C>T	p.Arg2433Trp	p.R2433W	ENST00000219905	NM_001164273.1	2433	Cgg/Tgg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15965090	15965090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	184	335	1	ENST00000268712.3:c.5506G>A	p.Val1836Met	p.V1836M	ENST00000268712	NM_006311.3	1836	Gtg/Atg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193107231	193107231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	129	286	0	ENST00000367435.3:c.440G>A	p.Arg147His	p.R147H	ENST00000367435	NM_024529.4	147	cGc/cAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435004	110435004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	288	715	0	ENST00000375856.3:c.3397G>A	p.Ala1133Thr	p.A1133T	ENST00000375856	NM_003749.2	1133	Gcc/Acc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060912	38060912	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	194	371	0	ENST00000250448.2:c.1077delC	p.Ile360Ter	p.I360*	ENST00000250448	NM_004496.3	359	ccC/cc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	324	691	2	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
ATRX	546	MSKCC	GRCh37	X	76939663	76939663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	267	284	0	ENST00000373344.5:c.1085C>T	p.Thr362Ile	p.T362I	ENST00000373344	NM_000489.3	362	aCc/aTc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943788	71943788	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771815535		P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	253	586	0	ENST00000298229.2:c.1831C>T	p.Arg611Cys	p.R611C	ENST00000298229	NM_001567.3	611	Cgc/Tgc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98240351	98240351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	194	359	0	ENST00000331920.6:c.1333G>A	p.Gly445Ser	p.G445S	ENST00000331920	NM_000264.3	445	Ggc/Agc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	536	420	9	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427950	49427950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	238	552	1	ENST00000301067.7:c.10640G>A	p.Arg3547His	p.R3547H	ENST00000301067	NM_003482.3	3547	cGc/cAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541507	187541507	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758885671		P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	158	373	0	ENST00000441802.2:c.6233C>T	p.Ala2078Val	p.A2078V	ENST00000441802	NM_005245.3	2078	gCg/gTg																																																																															
SMO	6608	MSKCC	GRCh37	7	128852212	128852212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	589	695	4	ENST00000249373.3:c.2284C>T	p.Arg762Cys	p.R762C	ENST00000249373	NM_005631.4	762	Cgc/Tgc																																																																															
MDM4	4194	MSKCC	GRCh37	1	204515952	204515952	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	201	410	1	ENST00000367182.3:c.850C>A	p.Leu284Met	p.L284M	ENST00000367182	NM_001278516.1	284	Ctg/Atg																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588174	69588174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	243	553	0	ENST00000168712.1:c.524C>T	p.Pro175Leu	p.P175L	ENST00000168712	NM_002007.2	175	cCc/cTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374788	118374789	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	204	339	0	ENST00000534358.1:c.8185_8186del	p.Ser2729Ter	p.S2729*	ENST00000534358	NM_005933.3	2727	acAGag/acag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25368467	25368467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	181	399	0	ENST00000256078.4:c.478G>A	p.Val160Met	p.V160M	ENST00000256078	NM_033360.2	160	Gtg/Atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420432	49420432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	264	521	0	ENST00000301067.7:c.15317G>A	p.Arg5106His	p.R5106H	ENST00000301067	NM_003482.3	5106	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437176	49437176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	236	568	1	ENST00000301067.7:c.5503C>T	p.Arg1835Cys	p.R1835C	ENST00000301067	NM_003482.3	1835	Cgt/Tgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133249294	133249294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	300	643	0	ENST00000320574.5:c.1605C>A	p.Asp535Glu	p.D535E	ENST00000320574	NM_006231.2	535	gaC/gaA																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562258	21562258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	309	658	1	ENST00000382592.4:c.1661G>A	p.Gly554Asp	p.G554D	ENST00000382592	NM_014572.2	554	gGc/gAc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26975414	26975414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	200	382	0	ENST00000381527.3:c.1040C>T	p.Ala347Val	p.A347V	ENST00000381527	NM_001260.1	347	gCc/gTc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608024	28608024	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	179	406	0	ENST00000241453.7:c.1942G>T	p.Glu648Ter	p.E648*	ENST00000241453	NM_004119.2	648	Gaa/Taa																																																																															
MGA	23269	MSKCC	GRCh37	15	42003386	42003386	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	208	414	0	ENST00000219905.7:c.2923C>T	p.Gln975Ter	p.Q975*	ENST00000219905	NM_001164273.1	975	Cag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42032392	42032392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	196	403	0	ENST00000219905.7:c.4576C>T	p.Arg1526Trp	p.R1526W	ENST00000219905	NM_001164273.1	1526	Cgg/Tgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829121	72829121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	178	420	0	ENST00000268489.5:c.7460C>T	p.Ala2487Val	p.A2487V	ENST00000268489	NM_006885.3	2487	gCg/gTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346255	89346255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	96	268	0	ENST00000301030.4:c.6695G>A	p.Arg2232His	p.R2232H	ENST00000301030	NM_001256183.1	2232	cGt/cAt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40474422	40474422	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	254	554	0	ENST00000264657.5:c.1979T>C	p.Met660Thr	p.M660T	ENST00000264657	NM_139276.2	660	aTg/aCg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105601	11105601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	301	660	2	ENST00000344626.4:c.1517C>T	p.Thr506Met	p.T506M	ENST00000344626	NM_003072.3	506	aCg/aTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152056	11152056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	242	503	1	ENST00000344626.4:c.4244G>A	p.Arg1415Gln	p.R1415Q	ENST00000344626	NM_003072.3	1415	cGa/cAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212576	36212576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	319	731	0	ENST00000222270.7:c.2327G>A	p.Arg776Gln	p.R776Q	ENST00000222270	NM_014727.1	776	cGg/cAg																																																																															
AKT2	208	MSKCC	GRCh37	19	40741911	40741911	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	254	613	0	ENST00000392038.2:c.1061A>G	p.Asp354Gly	p.D354G	ENST00000392038	NM_001626.4	354	gAc/gGc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158634720	158634720	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777150519		P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	149	316	0	ENST00000263640.3:c.466C>T	p.Arg156Cys	p.R156C	ENST00000263640	NM_001105.4	156	Cgc/Tgc																																																																															
EP300	2033	MSKCC	GRCh37	22	41551033	41551033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	224	434	0	ENST00000263253.7:c.3177G>A	p.Met1059Ile	p.M1059I	ENST00000263253	NM_001429.3	1059	atG/atA																																																																															
MST1	4485	MSKCC	GRCh37	3	49721510	49721510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	454	469	2	ENST00000449682.2:c.2129G>A	p.Arg710His	p.R710H	ENST00000449682	NM_020998.3	710	cGt/cAt																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119582440	119582440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	222	195	0	ENST00000316626.5:c.961C>T	p.Arg321Ter	p.R321*	ENST00000316626		321	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880977	134880977	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	341	435	0	ENST00000398015.3:c.1540T>C	p.Tyr514His	p.Y514H	ENST00000398015	NM_004441.4	514	Tac/Cac																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504426	186504427	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	232	500	0	ENST00000323963.5:c.770_771del	p.Glu257GlyfsTer9	p.E257Gfs*9	ENST00000323963		255	GAg/g																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157454196	157454196	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	224	460	0	ENST00000346085.5:c.2406G>T	p.Met802Ile	p.M802I	ENST00000346085	NM_020732.3	802	atG/atT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341932	8341932	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	183	382	0	ENST00000356435.5:c.4708T>A	p.Leu1570Ile	p.L1570I	ENST00000356435		1570	Tta/Ata																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98242736	98242736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	191	425	1	ENST00000331920.6:c.881G>A	p.Arg294His	p.R294H	ENST00000331920	NM_000264.3	294	cGc/cAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396518	139396518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	239	609	0	ENST00000277541.6:c.5407G>A	p.Gly1803Ser	p.G1803S	ENST00000277541	NM_017617.3	1803	Ggt/Agt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400039	139400039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	220	560	1	ENST00000277541.6:c.4309G>A	p.Gly1437Arg	p.G1437R	ENST00000277541	NM_017617.3	1437	Ggg/Agg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410637	63410637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	300	359	0	ENST00000330258.3:c.2530G>A	p.Gly844Ser	p.G844S	ENST00000330258	NM_152424.3	844	Ggc/Agc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123200102	123200102	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	268	255	0	ENST00000218089.9:c.2174T>A	p.Met725Lys	p.M725K	ENST00000218089	NM_001042749.1	725	aTg/aAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	93	388	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	123	479	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602584	10602584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	118	471	0	ENST00000171111.5:c.994G>A	p.Gly332Ser	p.G332S	ENST00000171111	NM_203500.1	332	Ggc/Agc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735560	40735560	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0025956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	93	349	0	ENST00000373198.4:c.3313G>T	p.Ala1105Ser	p.A1105S	ENST00000373198	NM_133170.3	1105	Gct/Tct																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11113836	11113836	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0025956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	74	441	0	ENST00000344626.4:c.1943+1G>A		p.X648_splice	ENST00000344626	NM_003072.3	648																																																																																
ERG	2078	MSKCC	GRCh37	21	39755607	39755607	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0025956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	94	371	0	ENST00000288319.7:c.1158C>G	p.Tyr386Ter	p.Y386*	ENST00000288319	NM_182918.3	386	taC/taG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0025957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	295	326	2	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0025957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	384	588	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870845	12870846	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	156	151	0	ENST00000228872.4:c.74dupA	p.Pro26AlafsTer99	p.P26Afs*99	ENST00000228872	NM_004064.3	24	-/A																																																																															
CDH1	999	MSKCC	GRCh37	16	68863582	68863582	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	416	552	0	ENST00000261769.5:c.2324del	p.Gly775AlafsTer8	p.G775Afs*8	ENST00000261769	NM_004360.3	774	aGg/ag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680915	30680915	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	207	542	4	ENST00000376406.3:c.804G>T	p.Arg268Ser	p.R268S	ENST00000376406	NM_014641.2	268	agG/agT																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119789	70119789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1199	95	574	0	ENST00000245479.2:c.791G>C	p.Arg264Thr	p.R264T	ENST00000245479	NM_000346.3	264	aGa/aCa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176132122	176132122	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0026031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	142	403	0	ENST00000367669.3:c.645T>G	p.Asn215Lys	p.N215K	ENST00000367669	NM_022457.5	215	aaT/aaG																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374837	118374837	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	52	323	1	ENST00000534358.1:c.8230C>A	p.Pro2744Thr	p.P2744T	ENST00000534358	NM_005933.3	2744	Cca/Aca																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610560	81610560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	41	312	0	ENST00000298171.2:c.2158C>T	p.Gln720Ter	p.Q720*	ENST00000298171	NM_000369.2	720	Cag/Tag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2126084	2126084	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	140	673	1	ENST00000219476.3:c.2655C>G	p.Ile885Met	p.I885M	ENST00000219476	NM_000548.3	885	atC/atG																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761202	59761202	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1296	174	585	0	ENST00000259008.2:c.3205C>T	p.Gln1069Ter	p.Q1069*	ENST00000259008	NM_032043.2	1069	Caa/Taa																																																																															
EP300	2033	MSKCC	GRCh37	22	41536262	41536262	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0026031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	75	427	0	ENST00000263253.7:c.1878+1G>A		p.X626_splice	ENST00000263253	NM_001429.3	626																																																																																
CDKN2B	1030	MSKCC	GRCh37	9	22008941	22008941	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	84	472	0	ENST00000276925.6:c.12G>C	p.Glu4Asp	p.E4D	ENST00000276925	NM_004936.3	4	gaG/gaC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32930636	32930637	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCTTTCCA			P-0026032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	76	413	0	ENST00000380152.3:c.7508_7515dup	p.Gln2506SerfsTer21	p.Q2506Sfs*21	ENST00000380152		2503	gtc/gTCTTTCCAtc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554505	63554505	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	79	485	0	ENST00000307078.5:c.234G>A	p.Trp78Ter	p.W78*	ENST00000307078	NM_004655.3	78	tgG/tgA																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204737453	204737453	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	140	518	0	ENST00000302823.3:c.590C>G	p.Thr197Arg	p.T197R	ENST00000302823	NM_005214.4	197	aCa/aGa																																																																															
AR	367	MSKCC	GRCh37	X	66765090	66765090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	28	614	0	ENST00000374690.3:c.102C>G	p.Ile34Met	p.I34M	ENST00000374690	NM_000044.3	34	atC/atG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	360	387	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0026036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	591	632	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226859	2226879	+	inframe_deletion	In_Frame_Del	DEL	GCGGCGTCCTCCGCAGGCGGC	GCGGCGTCCTCCGCAGGCGGC	-			P-0026036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	92	387	0	ENST00000398665.3:c.4353_4373del	p.Gly1452_Ala1458del	p.G1452_A1458del	ENST00000398665	NM_032482.2	1447	GCGGCGTCCTCCGCAGGCGGC/-																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932084	39932085	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	224	549	1	ENST00000378444.4:c.2514dupC	p.Lys839GlnfsTer5	p.K839Qfs*5	ENST00000378444	NM_001123385.1	838	-/C																																																																															
FLT1	2321	MSKCC	GRCh37	13	29004254	29004254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143093353		P-0026036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	201	296	0	ENST00000282397.4:c.1039G>A	p.Val347Ile	p.V347I	ENST00000282397	NM_002019.4	347	Gta/Ata																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440948	56440948	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	388	452	1	ENST00000407977.2:c.389G>T	p.Gly130Val	p.G130V	ENST00000407977		130	gGt/gTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123721	11123721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	205	504	1	ENST00000344626.4:c.2371G>A	p.Ala791Thr	p.A791T	ENST00000344626	NM_003072.3	791	Gcg/Acg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434614	110434614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	305	757	1	ENST00000375856.3:c.3787G>A	p.Gly1263Arg	p.G1263R	ENST00000375856	NM_003749.2	1263	Ggg/Agg																																																																															
CDH1	999	MSKCC	GRCh37	16	68853257	68853321	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTGGACAGGGAGGATTTTGAGCACGTGAAGAACAGCACGTACACAGCCCTAATCATAGCTACA	AGCTGGACAGGGAGGATTTTGAGCACGTGAAGAACAGCACGTACACAGCCCTAATCATAGCTACA	CGCTTCTTCAGTTATATGGTTACTTCC			P-0026055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	232	640	4	ENST00000261769.5:c.1640_1704delinsCGCTTCTTCAGTTATATGGTTACTTCC	p.Glu547AlafsTer28	p.E547Afs*28	ENST00000261769	NM_004360.3	547	gAGCTGGACAGGGAGGATTTTGAGCACGTGAAGAACAGCACGTACACAGCCCTAATCATAGCTACA/gCGCTTCTTCAGTTATATGGTTACTTCC																																																																															
RHOA	387	MSKCC	GRCh37	3	49412890	49412890	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	448	718	0	ENST00000418115.1:c.133G>C	p.Asp45His	p.D45H	ENST00000418115	NM_001664.2	45	Gat/Cat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0026055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	977	737	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185190897	185190897	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1357	80	757	1	ENST00000265026.3:c.1778G>T	p.Gly593Val	p.G593V	ENST00000265026	NM_004721.4	593	gGg/gTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111518	56111518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	97	95	0	ENST00000399503.3:c.118G>T	p.Ala40Ser	p.A40S	ENST00000399503	NM_005921.1	40	Gcc/Tcc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294138	1294138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	791	1040	6	ENST00000310581.5:c.863C>T	p.Ala288Val	p.A288V	ENST00000310581	NM_198253.2	288	gCg/gTg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575362	64575362	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0026064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	477	582	0	ENST00000337652.1:c.669+1G>T		p.X223_splice	ENST00000337652	NM_130803.2	223																																																																																
ATM	472	MSKCC	GRCh37	11	108119733	108119733	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	43	310	0	ENST00000278616.4:c.1139A>G	p.Tyr380Cys	p.Y380C	ENST00000278616	NM_000051.3	380	tAc/tGc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861951	57861951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	433	539	0	ENST00000228682.2:c.1252C>T	p.Arg418Trp	p.R418W	ENST00000228682	NM_005269.2	418	Cgg/Tgg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515400	103515400	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	38	317	1	ENST00000355739.4:c.1901T>C	p.Ile634Thr	p.I634T	ENST00000355739	NM_000123.3	634	aTt/aCt																																																																															
EP300	2033	MSKCC	GRCh37	22	41572909	41572909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	553	603	1	ENST00000263253.7:c.5194C>T	p.Arg1732Cys	p.R1732C	ENST00000263253	NM_001429.3	1732	Cgc/Tgc																																																																															
E2F3	1871	MSKCC	GRCh37	6	20488368	20488368	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	45	564	0	ENST00000346618.3:c.1024A>G	p.Thr342Ala	p.T342A	ENST00000346618	NM_001949.4	342	Acc/Gcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0026070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	188	599	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577197	64577197	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	224	746	0	ENST00000337652.1:c.385del	p.Leu129SerfsTer25	p.L129Sfs*25	ENST00000337652	NM_130803.2	129	Ctc/tc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178947833	178947833	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	46	368	0	ENST00000263967.3:c.2708G>C	p.Gly903Ala	p.G903A	ENST00000263967	NM_006218.2	903	gGa/gCa																																																																															
TEK	7010	MSKCC	GRCh37	9	27172703	27172703	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	32	643	1	ENST00000380036.4:c.718T>A	p.Cys240Ser	p.C240S	ENST00000380036	NM_000459.3	240	Tgc/Agc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210438	36210438	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	92	525	0	ENST00000222270.7:c.431A>G	p.Gln144Arg	p.Q144R	ENST00000222270	NM_014727.1	144	cAg/cGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916924	178916929	+	inframe_deletion	In_Frame_Del	DEL	CAGTAG	CAGTAG	-			P-0026079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	77	595	0	ENST00000263967.3:c.311_316delCAGTAG	p.Pro104_Gly106delinsArg	p.P104_G106delinsR	ENST00000263967	NM_006218.2	104	cCAGTAGgc/cgc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467825	66467825	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	56	385	0	ENST00000273854.3:c.444G>C	p.Lys148Asn	p.K148N	ENST00000273854	NM_004439.5	148	aaG/aaC																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168532	56168533	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCTCATGATTTCCTGG			P-0026079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	57	309	0	ENST00000399503.3:c.1500_1501insCTGGTCTCATGATTTC	p.Tyr501LeufsTer4	p.Y501Lfs*4	ENST00000399503	NM_005921.1	496	-/TCTCATGATTTCCTGG																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0026080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	14	504	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0026099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	97	409	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0026099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	38	255	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0026099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	19	209	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643727	52643728	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0026099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	34	320	0	ENST00000394830.3:c.2168_2169del	p.Ser723TyrfsTer3	p.S723Yfs*3	ENST00000394830	NM_018313.4	723	tCT/t																																																																															
TET2	54790	MSKCC	GRCh37	4	106197660	106197660	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	47	189	0	ENST00000380013.4:c.5993A>G	p.Tyr1998Cys	p.Y1998C	ENST00000380013	NM_001127208.2	1998	tAc/tGc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332826	153332826	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	61	240	0	ENST00000281708.4:c.130C>T	p.Gln44Ter	p.Q44*	ENST00000281708	NM_033632.3	44	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112128170	112128170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	29	264	0	ENST00000257430.4:c.673G>A	p.Glu225Lys	p.E225K	ENST00000257430	NM_000038.5	225	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175494	112175500	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCAGC	TGCCAGC	-			P-0026099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	16	159	0	ENST00000257430.4:c.4204_4210del	p.Ala1402ProfsTer11	p.A1402Pfs*11	ENST00000257430	NM_000038.5	1401	atTGCCAGC/at																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0026113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	126	379	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0026116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	11	202	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	67	152	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	9	128	1	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	101	268	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	87	242	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913294		P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	53	305	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100425	8100425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	108	398	0	ENST00000346208.3:c.404delC	p.Pro135ArgfsTer60	p.P135Rfs*60	ENST00000346208		133	taC/ta																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	91	330	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
ATM	472	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781894		P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	8	235	0	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	94	305	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
HGF	3082	MSKCC	GRCh37	7	81335040	81335040	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751819844		P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	73	216	0	ENST00000222390.5:c.1787C>T	p.Thr596Met	p.T596M	ENST00000222390	NM_000601.4	596	aCg/aTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202149818	202149819	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	65	301	0	ENST00000358485.4:c.1264dup	p.Asp422GlyfsTer2	p.D422Gfs*2	ENST00000358485	NM_001080125.1	420	cag/caGg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	82	219	10	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119758	70119758	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	147	320	0	ENST00000245479.2:c.760C>T	p.Arg254Ter	p.R254*	ENST00000245479	NM_000346.3	254	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112178033	112178033	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	33	223	0	ENST00000257430.4:c.6747del	p.Gly2250AlafsTer29	p.G2250Afs*29	ENST00000257430	NM_000038.5	2248	Aaa/aa																																																																															
FYN	2534	MSKCC	GRCh37	6	112020823	112020823	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	25	267	0	ENST00000368678.4:c.748A>G	p.Thr250Ala	p.T250A	ENST00000368678		250	Acc/Gcc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910708	29910708	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	31	417	0	ENST00000376809.5:c.248A>G	p.Tyr83Cys	p.Y83C	ENST00000376809	NM_002116.7	83	tAt/tGt																																																																															
ATRX	546	MSKCC	GRCh37	X	76919038	76919038	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	35	150	0	ENST00000373344.5:c.3953delA	p.Asn1318IlefsTer28	p.N1318Ifs*28	ENST00000373344	NM_000489.3	1318	aAt/at																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270529	98270530	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778175153		P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	35	163	2	ENST00000331920.6:c.114dup	p.Leu39AlafsTer51	p.L39Afs*51	ENST00000331920	NM_000264.3	38	-/G																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041695	14041695	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	17	230	1	ENST00000311895.7:c.2242A>G	p.Met748Val	p.M748V	ENST00000311895	NM_005236.2	748	Atg/Gtg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324892	31324892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs765875917		P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	46	78	0	ENST00000412585.2:c.44del	p.Ala15GlyfsTer5	p.A15Gfs*5	ENST00000412585	NM_005514.6	15	gCg/gg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	57	421	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937355	32937355	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	68	224	0	ENST00000380152.3:c.8021delA	p.Lys2674ArgfsTer2	p.K2674Rfs*2	ENST00000380152		2672	atA/at																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300040	137300040	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	143	386	1	ENST00000481739.1:c.331del	p.Leu111TrpfsTer57	p.L111Wfs*57	ENST00000481739	NM_002957.4	109	Ccc/cc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	86	331	0	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
MTOR	2475	MSKCC	GRCh37	1	11169741	11169741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	98	294	0	ENST00000361445.4:c.7412C>T	p.Thr2471Met	p.T2471M	ENST00000361445	NM_004958.3	2471	aCg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427027	49427027	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	20	255	0	ENST00000301067.7:c.11461del	p.Gln3821ArgfsTer9	p.Q3821Rfs*9	ENST00000301067	NM_003482.3	3821	Cag/ag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31468079	31468079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	117	313	1	ENST00000344624.3:c.2333G>A	p.Arg778His	p.R778H	ENST00000344624		778	cGc/cAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883774	37883774	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	126	395	1	ENST00000269571.5:c.3391delC	p.Leu1131Ter	p.L1131*	ENST00000269571		1129	gCc/gc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45796223	45796223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	106	304	1	ENST00000372115.3:c.1441C>T	p.Arg481Cys	p.R481C	ENST00000372115	NM_001048171.1	481	Cgt/Tgt																																																																															
SMYD3	64754	MSKCC	GRCh37	1	245927401	245927401	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	43	287	0	ENST00000388985.4:c.1127T>C	p.Val376Ala	p.V376A	ENST00000388985		376	gTt/gCt																																																																															
TET1	80312	MSKCC	GRCh37	10	70333815	70333815	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	76	214	0	ENST00000373644.4:c.1720T>A	p.Ser574Thr	p.S574T	ENST00000373644	NM_030625.2	574	Tct/Act																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518082	69518082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	119	358	0	ENST00000294312.3:c.283G>A	p.Val95Met	p.V95M	ENST00000294312	NM_005117.2	95	Gtg/Atg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307507	118307512	+	inframe_deletion	In_Frame_Del	DEL	TCGTCA	TCGTCA	-			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	76	271	0	ENST00000534358.1:c.285_290del	p.Ser97_Ser98del	p.S97_S98del	ENST00000534358	NM_005933.3	94	TCGTCA/-																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562976	21562976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	112	292	0	ENST00000382592.4:c.943C>T	p.His315Tyr	p.H315Y	ENST00000382592	NM_014572.2	315	Cac/Tac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827811	72827811	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	31	289	0	ENST00000268489.5:c.8770T>A	p.Cys2924Ser	p.C2924S	ENST00000268489	NM_006885.3	2924	Tgc/Agc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81819740	81819740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	86	289	1	ENST00000359376.3:c.146C>T	p.Thr49Met	p.T49M	ENST00000359376	NM_002661.3	49	aCg/aTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29483053	29483055	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	103	310	0	ENST00000358273.4:c.117_119delCAA	p.Asn39del	p.N39del	ENST00000358273	NM_001042492.2	38	cACAac/cac																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119696	70119696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	103	343	0	ENST00000245479.2:c.698G>A	p.Gly233Asp	p.G233D	ENST00000245479	NM_000346.3	233	gGc/gAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221450	36221450	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	160	393	0	ENST00000222270.7:c.5209A>T	p.Ile1737Phe	p.I1737F	ENST00000222270	NM_014727.1	1737	Att/Ttt																																																																															
AXL	558	MSKCC	GRCh37	19	41744483	41744483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	108	436	0	ENST00000301178.4:c.1103G>A	p.Arg368Gln	p.R368Q	ENST00000301178	NM_021913.4	368	cGg/cAg																																																																															
CIC	23152	MSKCC	GRCh37	19	42791776	42791776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	114	370	0	ENST00000575354.2:c.662G>A	p.Arg221His	p.R221H	ENST00000575354	NM_015125.3	221	cGt/cAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42796717	42796717	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	98	233	0	ENST00000575354.2:c.3176-1G>C		p.X1059_splice	ENST00000575354	NM_015125.3	1059																																																																																
POLD1	5424	MSKCC	GRCh37	19	50905536	50905536	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	116	408	0	ENST00000440232.2:c.664C>A	p.Pro222Thr	p.P222T	ENST00000440232	NM_002691.3	222	Ccg/Acg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25462047	25462047	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1202038704		P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	77	309	0	ENST00000264709.3:c.2360C>T	p.Ala787Val	p.A787V	ENST00000264709	NM_175629.2	787	gCt/gTt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267418	198267418	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	24	250	0	ENST00000335508.6:c.1939T>C	p.Phe647Leu	p.F647L	ENST00000335508	NM_012433.2	647	Ttc/Ctc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266000	41266175	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGG	CTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGG	-			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	78	81	0	ENST00000349496.5:c.14-17_172del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
MST1R	4486	MSKCC	GRCh37	3	49933492	49933492	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56091918		P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	149	485	0	ENST00000296474.3:c.2698G>A	p.Val900Met	p.V900M	ENST00000296474	NM_002447.2	900	Gtg/Atg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807549	1807549	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	45	378	0	ENST00000260795.2:c.1718C>A	p.Pro573Gln	p.P573Q	ENST00000260795		573	cCg/cAg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31472219	31472219	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	50	407	0	ENST00000344624.3:c.2192A>C	p.Gln731Pro	p.Q731P	ENST00000344624		731	cAg/cCg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460560	149460560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	74	351	1	ENST00000286301.3:c.77G>A	p.Ser26Asn	p.S26N	ENST00000286301	NM_005211.3	26	aGt/aAt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513239	149513239	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs34586048		P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	87	332	1	ENST00000261799.4:c.844G>A	p.Glu282Lys	p.E282K	ENST00000261799	NM_002609.3	282	Gag/Aag																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803023	32803023	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	161	306	0	ENST00000374899.4:c.853A>G	p.Met285Val	p.M285V	ENST00000374899	NM_018833.2	285	Atg/Gtg																																																																															
HGF	3082	MSKCC	GRCh37	7	81359017	81359017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	54	262	0	ENST00000222390.5:c.944G>A	p.Gly315Asp	p.G315D	ENST00000222390	NM_000601.4	315	gGc/gAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151843813	151843813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	60	201	0	ENST00000262189.6:c.13902G>T	p.Trp4634Cys	p.W4634C	ENST00000262189	NM_170606.2	4634	tgG/tgT																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372313	55372313	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	39	289	0	ENST00000297316.4:c.1007del	p.Pro336LeufsTer51	p.P336Lfs*51	ENST00000297316	NM_022454.3	335	Ccc/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98268792	98268793	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	101	270	0	ENST00000331920.6:c.290dupA	p.Asn97LysfsTer43	p.N97Kfs*43	ENST00000331920	NM_000264.3	97	aac/aaAc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44966745	44966745	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	52	379	0	ENST00000377967.4:c.3972del	p.Glu1325LysfsTer31	p.E1325Kfs*31	ENST00000377967	NM_021140.2	1323	acA/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	44	260	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2100465	2100465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	63	260	0	ENST00000219476.3:c.203C>T	p.Ala68Val	p.A68V	ENST00000219476	NM_000548.3	68	gCa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	93	275	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0026122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	211	360	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0026122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	34	127	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0026122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	97	194	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106515198	106515198	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146675267		P-0026122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	114	234	0	ENST00000359195.3:c.2341G>A	p.Glu781Lys	p.E781K	ENST00000359195	NM_002649.2	781	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577531	7577531	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	31	350	1	ENST00000269305.4:c.750delC	p.Ile251SerfsTer94	p.I251Sfs*94	ENST00000269305	NM_001126112.2	250	ccC/cc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5215410	5215410	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	22	253	0	ENST00000357368.4:c.4208G>C	p.Gly1403Ala	p.G1403A	ENST00000357368	NM_002850.3	1403	gGa/gCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	184	544	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0026204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	220	494	1	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575671	48575671	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0026204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	125	487	0	ENST00000342988.3:c.431C>G	p.Ser144Ter	p.S144*	ENST00000342988	NM_005359.5	144	tCa/tGa																																																																															
INSR	3643	MSKCC	GRCh37	19	7267878	7267878	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	35	348	0	ENST00000302850.5:c.130C>G	p.Leu44Val	p.L44V	ENST00000302850	NM_000208.2	44	Ctc/Gtc																																																																															
AKT2	208	MSKCC	GRCh37	19	40739780	40739780	+	stop_lost	Nonstop_Mutation	SNP	C	C	A			P-0026204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1852	251	512	0	ENST00000392038.2:c.1445G>T	p.Ter482LeuextTer101	p.*482Lext*101	ENST00000392038	NM_001626.4	482	tGa/tTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0001243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1396	263	655	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242478	55242478	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913229		P-0001243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1271	624	801	0	ENST00000275493.2:c.2248G>C	p.Ala750Pro	p.A750P	ENST00000275493	NM_005228.3	750	Gca/Cca																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63816919	63816919	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			470	188	325	0	ENST00000279873.7:c.890A>G	p.Asn297Ser	p.N297S	ENST00000279873	NM_032199.2	297	aAc/aGc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222741	53222741	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1630	266	925	0	ENST00000375401.3:c.4195T>A	p.Leu1399Met	p.L1399M	ENST00000375401	NM_004187.3	1399	Ttg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0001243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1339	604	803	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149290731	149290731	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1146	174	619	0	ENST00000360632.3:c.488T>C	p.Leu163Pro	p.L163P	ENST00000360632	NM_015472.4	163	cTg/cCg																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149290739	149290739	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	161	586	0	ENST00000360632.3:c.480T>G	p.Asn160Lys	p.N160K	ENST00000360632	NM_015472.4	160	aaT/aaG																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149290743	149290743	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	155	566	0	ENST00000360632.3:c.476T>C	p.Met159Thr	p.M159T	ENST00000360632	NM_015472.4	159	aTg/aCg																																																																															
NBN	4683	MSKCC	GRCh37	8	90996767	90996768	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0001243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			682	236	387	1	ENST00000265433.3:c.22_23delGCinsAA	p.Ala8Lys	p.A8K	ENST00000265433	NM_002485.4	8	GCg/AAg																																																																															
ATM	472	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0001313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			196	687	610	2	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134975	2134975	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			255	541	976	2	ENST00000219476.3:c.4517A>G	p.His1506Arg	p.H1506R	ENST00000219476	NM_000548.3	1506	cAt/cGt																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945263	54945263	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0001313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			403	244	494	0	ENST00000312783.6:c.1163C>G	p.Ser388Ter	p.S388*	ENST00000312783	NM_198436.1	388	tCa/tGa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0001313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			229	350	690	5	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448301	56448301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			704	220	895	0	ENST00000407977.2:c.346C>T	p.Pro116Ser	p.P116S	ENST00000407977		116	Ccc/Tcc																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66518943	66518943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			522	136	676	0	ENST00000358598.2:c.224C>T	p.Thr75Ile	p.T75I	ENST00000358598	NM_212471.2	75	aCa/aTa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781233	135781233	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			556	171	705	0	ENST00000298552.3:c.1732A>T	p.Thr578Ser	p.T578S	ENST00000298552	NM_001162426.1	578	Acc/Tcc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166014	118166014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			562	145	426	0	ENST00000369448.3:c.524G>A	p.Arg175His	p.R175H	ENST00000369448	NM_017709.3	175	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0001490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			764	407	710	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495462	56495462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			883	172	650	0	ENST00000267101.3:c.3652G>A	p.Glu1218Lys	p.E1218K	ENST00000267101	NM_001982.3	1218	Gag/Aag																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001366	29001366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			723	260	397	0	ENST00000282397.4:c.1366G>A	p.Ala456Thr	p.A456T	ENST00000282397	NM_002019.4	456	Gca/Aca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821437	72821437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			766	552	682	0	ENST00000268489.5:c.10738G>A	p.Asp3580Asn	p.D3580N	ENST00000268489	NM_006885.3	3580	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			576	492	686	1	ENST00000269305.4:c.581T>A	p.Leu194His	p.L194H	ENST00000269305	NM_001126112.2	194	cTt/cAt																																																																															
CASP8	841	MSKCC	GRCh37	2	202131408	202131408	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			769	154	578	0	ENST00000358485.4:c.376T>G	p.Phe126Val	p.F126V	ENST00000358485	NM_001080125.1	126	Ttc/Gtc																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0001490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			722	251	425	3	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			627	251	367	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371941	55371941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	123	531	1	ENST00000297316.4:c.631G>A	p.Ala211Thr	p.A211T	ENST00000297316	NM_022454.3	211	Gcg/Acg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499786	8499786	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs141698449		P-0001490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			822	88	581	0	ENST00000356435.5:c.2183T>G	p.Val728Gly	p.V728G	ENST00000356435		728	gTt/gGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0002880-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			765	197	556	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002880-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			692	148	373	0	ENST00000361445.4:c.5930C>G	p.Thr1977Arg	p.T1977R	ENST00000361445	NM_004958.3	1977	aCa/aGa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			347	55	887	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520465	176520465	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61737768		P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			436	78	1352	1	ENST00000292408.4:c.1310G>A	p.Arg437His	p.R437H	ENST00000292408	NM_213647.1	437	cGt/cAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133252086	133252086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			334	143	887	0	ENST00000320574.5:c.1124G>A	p.Arg375Gln	p.R375Q	ENST00000320574	NM_006231.2	375	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			311	106	776	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			248	68	848	2	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			199	94	760	4	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163503	32163505	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			254	75	846	0	ENST00000375023.3:c.5721_5723del	p.Gly1908del	p.G1908del	ENST00000375023	NM_004557.3	1907	ggAGGc/ggc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061412	38061412	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			316	138	881	0	ENST00000250448.2:c.577C>G	p.Leu193Val	p.L193V	ENST00000250448	NM_004496.3	193	Ctg/Gtg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046958	128046958	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			367	182	970	1	ENST00000285398.2:c.777A>T	p.Glu259Asp	p.E259D	ENST00000285398	NM_000122.1	259	gaA/gaT																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			384	61	777	2	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155721	56155722	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			322	31	590	0	ENST00000399503.3:c.816_817del	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	271	agAAaa/agaa																																																																															
MITF	4286	MSKCC	GRCh37	3	69928373	69928373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			245	43	587	1	ENST00000352241.4:c.193C>T	p.Arg65Cys	p.R65C	ENST00000352241	NM_198159.2	65	Cgt/Tgt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966159	25966159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			305	145	931	0	ENST00000435504.4:c.3047C>T	p.Thr1016Met	p.T1016M	ENST00000435504		1016	aCg/aTg																																																																															
ATR	545	MSKCC	GRCh37	3	142217557	142217557	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			437	73	861	3	ENST00000350721.4:c.5440delA	p.Arg1814GlufsTer10	p.R1814Efs*10	ENST00000350721	NM_001184.3	1814	Aga/ga																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099253	4099255	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			315	144	1195	0	ENST00000262948.5:c.863_865del	p.Glu288del	p.E288del	ENST00000262948	NM_030662.3	288	gAAGga/gga																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748502	162748502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			213	77	549	0	ENST00000367921.3:c.2416C>T	p.Arg806Ter	p.R806*	ENST00000367921	NM_006182.2	806	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274018	10274018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			383	80	1184	0	ENST00000330684.3:c.251C>T	p.Thr84Met	p.T84M	ENST00000330684	NM_001134407.1	84	aCg/aTg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193119447	193119447	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762716583		P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			331	70	609	0	ENST00000367435.3:c.842G>A	p.Arg281His	p.R281H	ENST00000367435	NM_024529.4	281	cGc/cAc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650845	37650845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			530	107	1117	1	ENST00000447079.4:c.2317C>T	p.Arg773Cys	p.R773C	ENST00000447079	NM_015083.1	773	Cgt/Tgt																																																																															
RET	5979	MSKCC	GRCh37	10	43598017	43598017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			351	80	1066	2	ENST00000355710.3:c.565C>T	p.Arg189Cys	p.R189C	ENST00000355710	NM_020975.4	189	Cgc/Tgc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			388	50	813	4	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			361	126	1184	2	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240767	55240767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			453	61	1215	1	ENST00000275493.2:c.2011C>T	p.Arg671Cys	p.R671C	ENST00000275493	NM_005228.3	671	Cgc/Tgc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141545617	141545617	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			553	73	1356	0	ENST00000220592.5:c.2221A>G	p.Thr741Ala	p.T741A	ENST00000220592	NM_012154.3	741	Acc/Gcc																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17387390	17387390	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200016717		P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			508	51	1230	1	ENST00000359435.4:c.656G>A	p.Arg219His	p.R219H	ENST00000359435	NM_001033549.1	219	cGt/cAt																																																																															
PARP1	142	MSKCC	GRCh37	1	226576366	226576366	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			334	127	1011	1	ENST00000366794.5:c.708del	p.Ala237ProfsTer2	p.A237Pfs*2	ENST00000366794	NM_001618.3	236	aaA/aa																																																																															
ATR	545	MSKCC	GRCh37	3	142280136	142280136	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369434236		P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			496	107	936	0	ENST00000350721.4:c.1298G>A	p.Arg433His	p.R433H	ENST00000350721	NM_001184.3	433	cGt/cAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42794469	42794469	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			505	58	1205	3	ENST00000575354.2:c.1553delC	p.Pro518ArgfsTer5	p.P518Rfs*5	ENST00000575354	NM_015125.3	517	Ccc/cc																																																																															
SESN1	27244	MSKCC	GRCh37	6	109313997	109313997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			297	63	673	1	ENST00000436639.2:c.1226G>A	p.Arg409His	p.R409H	ENST00000436639	NM_014454.2	409	cGt/cAt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11184567	11184567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			417	82	947	1	ENST00000361445.4:c.6650G>A	p.Arg2217Gln	p.R2217Q	ENST00000361445	NM_004958.3	2217	cGg/cAg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937866	36937866	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			435	85	1355	0	ENST00000361632.4:c.970A>G	p.Ser324Gly	p.S324G	ENST00000361632		324	Agc/Ggc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136031	64136031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			341	76	1058	3	ENST00000334205.4:c.1292G>A	p.Arg431His	p.R431H	ENST00000334205	NM_003942.2	431	cGc/cAc																																																																															
CBL	867	MSKCC	GRCh37	11	119149290	119149290	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140627020		P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			464	32	887	0	ENST00000264033.4:c.1298C>T	p.Pro433Leu	p.P433L	ENST00000264033	NM_005188.3	433	cCg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427983	49427983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			389	78	943	1	ENST00000301067.7:c.10607G>A	p.Arg3536His	p.R3536H	ENST00000301067	NM_003482.3	3536	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435063	49435063	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			294	32	755	0	ENST00000301067.7:c.6490C>A	p.Pro2164Thr	p.P2164T	ENST00000301067	NM_003482.3	2164	Cca/Aca																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856595	111856595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			135	37	369	1	ENST00000341259.2:c.646C>T	p.Arg216Cys	p.R216C	ENST00000341259	NM_005475.2	216	Cgc/Tgc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95579448	95579448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			282	52	568	0	ENST00000343455.3:c.2021C>A	p.Pro674His	p.P674H	ENST00000343455	NM_177438.2	674	cCt/cAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42021365	42021365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			187	109	576	0	ENST00000219905.7:c.3661C>T	p.Arg1221Trp	p.R1221W	ENST00000219905	NM_001164273.1	1221	Cgg/Tgg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632584	3632584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			465	27	1166	3	ENST00000294008.3:c.5264C>T	p.Ala1755Val	p.A1755V	ENST00000294008	NM_032444.2	1755	gCg/gTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892147	9892147	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			346	52	787	0	ENST00000330684.3:c.2343del	p.Gln781HisfsTer27	p.Q781Hfs*27	ENST00000330684	NM_001134407.1	781	caG/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578199	7578199	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			306	62	1035	1	ENST00000269305.4:c.650T>C	p.Val217Ala	p.V217A	ENST00000269305	NM_001126112.2	217	gTg/gCg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16024413	16024413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			253	35	550	2	ENST00000268712.3:c.1805C>T	p.Ala602Val	p.A602V	ENST00000268712	NM_006311.3	602	gCg/gTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16097814	16097814	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			517	87	910	0	ENST00000268712.3:c.70T>G	p.Ser24Ala	p.S24A	ENST00000268712	NM_006311.3	24	Tct/Gct																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099324	4099324	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			482	32	1259	0	ENST00000262948.5:c.794A>G	p.Tyr265Cys	p.Y265C	ENST00000262948	NM_030662.3	265	tAc/tGc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610129	10610129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			501	29	1060	0	ENST00000171111.5:c.581T>C	p.Ile194Thr	p.I194T	ENST00000171111	NM_203500.1	194	aTt/aCt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36215632	36215632	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			326	50	898	0	ENST00000222270.7:c.3429G>T	p.Lys1143Asn	p.K1143N	ENST00000222270	NM_014727.1	1143	aaG/aaT																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905061	50905061	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			290	48	853	1	ENST00000440232.2:c.343C>G	p.Pro115Ala	p.P115A	ENST00000440232	NM_002691.3	115	Ccc/Gcc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50920514	50920514	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			273	44	816	0	ENST00000440232.2:c.3206T>C	p.Val1069Ala	p.V1069A	ENST00000440232	NM_002691.3	1069	gTc/gCc																																																																															
ALK	238	MSKCC	GRCh37	2	29416263	29416263	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			354	71	823	0	ENST00000389048.3:c.4690G>T	p.Ala1564Ser	p.A1564S	ENST00000389048	NM_004304.4	1564	Gcc/Tcc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46574083	46574083	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			278	63	1126	0	ENST00000263734.3:c.98T>C	p.Val33Ala	p.V33A	ENST00000263734	NM_001430.4	33	gTg/gCg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026788	48026788	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			275	17	697	0	ENST00000234420.5:c.1666T>C	p.Tyr556His	p.Y556H	ENST00000234420	NM_000179.2	556	Tat/Cat																																																																															
XPO1	7514	MSKCC	GRCh37	2	61709534	61709534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			363	24	631	2	ENST00000401558.2:c.2953G>A	p.Ala985Thr	p.A985T	ENST00000401558	NM_003400.3	985	Gcc/Acc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61725896	61725896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			467	92	841	0	ENST00000401558.2:c.671C>T	p.Ala224Val	p.A224V	ENST00000401558	NM_003400.3	224	gCa/gTa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99156077	99156077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			360	63	913	1	ENST00000074304.5:c.757G>A	p.Val253Met	p.V253M	ENST00000074304	NM_001134224.1	253	Gtg/Atg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99181121	99181121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			416	78	910	1	ENST00000074304.5:c.2062G>A	p.Gly688Ser	p.G688S	ENST00000074304	NM_001134224.1	688	Ggc/Agc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99185035	99185035	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			308	19	580	0	ENST00000074304.5:c.2437T>C	p.Phe813Leu	p.F813L	ENST00000074304	NM_001134224.1	813	Ttt/Ctt																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046269	128046269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			370	65	810	0	ENST00000285398.2:c.994C>T	p.Arg332Cys	p.R332C	ENST00000285398	NM_000122.1	332	Cgt/Tgt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225400301	225400301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			311	50	516	0	ENST00000264414.4:c.322G>A	p.Ala108Thr	p.A108T	ENST00000264414	NM_003590.4	108	Gct/Act																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46281255	46281255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			199	112	654	0	ENST00000371998.3:c.4052C>T	p.Pro1351Leu	p.P1351L	ENST00000371998		1351	cCg/cTg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42851147	42851147	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			483	120	918	0	ENST00000398585.3:c.746T>C	p.Leu249Pro	p.L249P	ENST00000398585	NM_001135099.1	249	cTg/cCg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806162	1806162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			417	71	1338	7	ENST00000260795.2:c.1181C>T	p.Thr394Met	p.T394M	ENST00000260795		394	aCg/aTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55984792	55984792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			383	69	766	1	ENST00000263923.4:c.337G>A	p.Val113Ile	p.V113I	ENST00000263923	NM_002253.2	113	Gtc/Atc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161662	56161662	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			301	100	671	0	ENST00000399503.3:c.1159A>C	p.Ser387Arg	p.S387R	ENST00000399503	NM_005921.1	387	Agt/Cgt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751606	57751606	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			197	12	379	0	ENST00000274289.3:c.1385G>A	p.Cys462Tyr	p.C462Y	ENST00000274289	NM_006622.3	462	tGc/tAc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449812	149449812	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			408	99	1238	1	ENST00000286301.3:c.1252T>A	p.Leu418Met	p.L418M	ENST00000286301	NM_005211.3	418	Ttg/Atg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149450136	149450136	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			412	92	1207	0	ENST00000286301.3:c.1083-2A>G		p.X361_splice	ENST00000286301	NM_005211.3	361																																																																																
HIST1H3J	8356	MSKCC	GRCh37	6	27858455	27858455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			165	75	652	1	ENST00000359303.2:c.116C>T	p.Pro39Leu	p.P39L	ENST00000359303	NM_003535.2	39	cCc/cTc																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793767	89793767	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			371	66	735	0	ENST00000336032.3:c.836A>G	p.Tyr279Cys	p.Y279C	ENST00000336032	NM_006813.2	279	tAt/tGt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553313	106553313	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			251	108	738	0	ENST00000369096.4:c.1278C>A	p.Ser426Arg	p.S426R	ENST00000369096	NM_001198.3	426	agC/agA																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975519	13975519	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			192	21	367	0	ENST00000405192.2:c.368C>G	p.Ala123Gly	p.A123G	ENST00000405192	NM_001163147.1	123	gCc/gGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884406	151884406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			315	76	596	1	ENST00000262189.6:c.4949C>T	p.Thr1650Ile	p.T1650I	ENST00000262189	NM_170606.2	1650	aCt/aTt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371911	55371911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			222	75	686	2	ENST00000297316.4:c.601G>A	p.Gly201Ser	p.G201S	ENST00000297316	NM_022454.3	201	Ggc/Agc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413945	139413945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			360	88	1238	1	ENST00000277541.6:c.815G>A	p.Cys272Tyr	p.C272Y	ENST00000277541	NM_017617.3	272	tGt/tAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578250	7578250	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005188-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	813	765	0	ENST00000269305.4:c.599delA	p.Asn200IlefsTer47	p.N200Ifs*47	ENST00000269305	NM_001126112.2	200	aAt/at																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685303	89685304	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0005188-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	524	373	0	ENST00000371953.3:c.202_203dup	p.Asn69ThrfsTer31	p.N69Tfs*31	ENST00000371953	NM_000314.4	66	-/AT																																																																															
NUP93	9688	MSKCC	GRCh37	16	56878465	56878465	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005188-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			765	331	515	0	ENST00000308159.5:c.2404C>T	p.Arg802Ter	p.R802*	ENST00000308159	NM_014669.4	802	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41408906	41408906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005188-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			648	266	472	1	ENST00000373198.4:c.520C>T	p.Pro174Ser	p.P174S	ENST00000373198	NM_133170.3	174	Cct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005551-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			796	30	799	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220370	1220370	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0005551-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			900	71	848	1	ENST00000326873.7:c.465-2A>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0005551-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			318	29	321	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11096987	11096987	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005551-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1427	95	1532	1	ENST00000344626.4:c.478C>T	p.Gln160Ter	p.Q160*	ENST00000344626	NM_003072.3	160	Cag/Tag																																																																															
BCL6	604	MSKCC	GRCh37	3	187444590	187444590	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005551-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			758	45	678	0	ENST00000232014.4:c.1637A>G	p.Tyr546Cys	p.Y546C	ENST00000232014	NM_001130845.1	546	tAc/tGc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522703	176522703	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005551-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1140	84	1236	2	ENST00000292408.4:c.1800G>T	p.Met600Ile	p.M600I	ENST00000292408	NM_213647.1	600	atG/atT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180039519	180039519	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005551-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1519	108	1537	0	ENST00000261937.6:c.3524G>T	p.Gly1175Val	p.G1175V	ENST00000261937	NM_182925.4	1175	gGc/gTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0007080-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			802	100	776	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55266490	55266490	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007080-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			708	64	827	0	ENST00000275493.2:c.2782G>C	p.Glu928Gln	p.E928Q	ENST00000275493	NM_005228.3	928	Gag/Cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			225	497	425	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1023835002		P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			173	144	314	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579533	7579533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			291	175	730	0	ENST00000269305.4:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000269305	NM_001126112.2	52	Caa/Taa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133883	55133883	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	112	345	0	ENST00000257290.5:c.1096G>C	p.Asp366His	p.D366H	ENST00000257290	NM_006206.4	366	Gat/Cat																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972633	25972633	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	181	355	0	ENST00000435504.4:c.1792C>T	p.Gln598Ter	p.Q598*	ENST00000435504		598	Cag/Tag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52663002	52663002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			196	104	371	0	ENST00000394830.3:c.1351G>A	p.Asp451Asn	p.D451N	ENST00000394830	NM_018313.4	451	Gat/Aat																																																																															
HGF	3082	MSKCC	GRCh37	7	81399233	81399233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			629	312	625	0	ENST00000222390.5:c.55C>T	p.Leu19Phe	p.L19F	ENST00000222390	NM_000601.4	19	Ctc/Ttc																																																																															
POLE	5426	MSKCC	GRCh37	12	133220464	133220464	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			511	148	566	0	ENST00000320574.5:c.4249G>T	p.Glu1417Ter	p.E1417*	ENST00000320574	NM_006231.2	1417	Gag/Tag																																																																															
POLE	5426	MSKCC	GRCh37	12	133252685	133252685	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149029910		P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			528	98	539	1	ENST00000320574.5:c.1015G>A	p.Asp339Asn	p.D339N	ENST00000320574	NM_006231.2	339	Gat/Aat																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619027	37619027	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			432	282	573	0	ENST00000447079.4:c.703G>C	p.Asp235His	p.D235H	ENST00000447079	NM_015083.1	235	Gat/Cat																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022766	31022766	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			199	612	501	0	ENST00000375687.4:c.2251G>T	p.Val751Phe	p.V751F	ENST00000375687	NM_015338.5	751	Gtt/Ttt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28903809	28903809	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			397	120	586	1	ENST00000282397.4:c.2650del	p.His884ThrfsTer6	p.H884Tfs*6	ENST00000282397	NM_002019.4	884	Cac/ac																																																																															
B2M	567	MSKCC	GRCh37	15	45007770	45007787	+	inframe_deletion	In_Frame_Del	DEL	GACTTGTCTTTCAGCAAG	GACTTGTCTTTCAGCAAG	-			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	193	314	0	ENST00000558401.1:c.221_238del	p.Leu74_Asp79del	p.L74_D79del	ENST00000558401	NM_004048.2	73	GACTTGTCTTTCAGCAAG/-																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646388	3646388	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			420	177	632	1	ENST00000294008.3:c.1690A>G	p.Met564Val	p.M564V	ENST00000294008	NM_032444.2	564	Atg/Gtg																																																																															
MLL3	58508	MSKCC	GRCh37	7	151874283	151874283	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	207	309	2	ENST00000262189.6:c.8255G>T	p.Gly2752Val	p.G2752V	ENST00000262189	NM_170606.2	2752	gGa/gTa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38148103	38148105	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			576	91	735	0	ENST00000317025.8:c.3006_3008del	p.Phe1003del	p.F1003del	ENST00000317025	NM_023034.1	1002	ttCTTt/ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0007659-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			79	294	854	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0007659-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			258	550	849	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223695	36223695	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007659-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			2215	165	884	0	ENST00000222270.7:c.6245G>T	p.Gly2082Val	p.G2082V	ENST00000222270	NM_014727.1	2082	gGc/gTc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6048647	6048647	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007659-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			849	251	674	0	ENST00000265849.7:c.4G>C	p.Glu2Gln	p.E2Q	ENST00000265849	NM_000535.5	2	Gag/Cag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0008024-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			582	514	706	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008024-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			689	617	725	0	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																															
MLL2	8085	MSKCC	GRCh37	12	49426305	49426305	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008024-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			909	1564	1163	2	ENST00000301067.7:c.12183A>C	p.Glu4061Asp	p.E4061D	ENST00000301067	NM_003482.3	4061	gaA/gaC																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609442	81609442	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008024-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			671	504	665	0	ENST00000298171.2:c.1040A>T	p.His347Leu	p.H347L	ENST00000298171	NM_000369.2	347	cAt/cTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48934162	48934162	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0008024-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			81	322	388	0	ENST00000267163.4:c.617T>A	p.Leu206Ter	p.L206*	ENST00000267163	NM_000321.2	206	tTa/tAa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047952	180047952	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008024-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1386	618	952	2	ENST00000261937.6:c.2223G>T	p.Glu741Asp	p.E741D	ENST00000261937	NM_182925.4	741	gaG/gaT																																																																															
ATRX	546	MSKCC	GRCh37	X	76939016	76939023	+	frameshift_variant	Frame_Shift_Del	DEL	TTTTTGAT	TTTTTGAT	-			P-0008024-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			132	431	651	0	ENST00000373344.5:c.1725_1732del	p.Lys575AsnfsTer4	p.K575Nfs*4	ENST00000373344	NM_000489.3	575	aaATCAAAAAct/aact																																																																															
TP53	7157	MSKCC	GRCh37	17	7578498	7578499	+	missense_variant	Missense_Mutation	DNP	CT	CT	GG			P-0009450-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			651	508	1033	1	ENST00000269305.4:c.431_432delinsCC	p.Gln144Pro	p.Q144P	ENST00000269305	NM_001126112.2	144	cAG/cCC																																																																															
RB1	5925	MSKCC	GRCh37	13	48921906	48921975	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TATGACTTCTAAATTACGAAAAAATGTTAAAAAGTCATAATGTTTTTCTTTTCAGGACATGTGAACTTAT	TATGACTTCTAAATTACGAAAAAATGTTAAAAAGTCATAATGTTTTTCTTTTCAGGACATGTGAACTTAT	-			P-0009450-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	169	361	0	ENST00000267163.4:c.501-55_515del		p.X167_splice	ENST00000267163	NM_000321.2	167																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602323	10602323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009450-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			658	117	721	0	ENST00000171111.5:c.1255G>A	p.Gly419Arg	p.G419R	ENST00000171111	NM_203500.1	419	Ggg/Agg																																																																															
SRC	6714	MSKCC	GRCh37	20	36012564	36012565	+	missense_variant	Missense_Mutation	DNP	GC	GC	AG			P-0009450-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			845	83	578	3	ENST00000358208.4:c.8_9delinsAG	p.Ser3Lys	p.S3K	ENST00000358208		3	aGC/aAG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010130-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			590	355	428	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0010130-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			298	325	499	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145430	58145430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010130-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			491	244	315	1	ENST00000257904.6:c.71G>T	p.Arg24Leu	p.R24L	ENST00000257904	NM_000075.3	24	cGt/cTt																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72842091	72842091	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010130-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			476	246	340	0	ENST00000325599.8:c.1157A>G	p.Tyr386Cys	p.Y386C	ENST00000325599	NM_018130.2	386	tAc/tGc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168743	32168743	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010130-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			303	888	656	2	ENST00000375023.3:c.4180C>A	p.Pro1394Thr	p.P1394T	ENST00000375023	NM_004557.3	1394	Cct/Act																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157469983	157469983	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010130-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			457	243	369	0	ENST00000346085.5:c.2777A>T	p.Gln926Leu	p.Q926L	ENST00000346085	NM_020732.3	926	cAg/cTg																																																																															
WT1	7490	MSKCC	GRCh37	11	32456696	32456696	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010130-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			404	271	343	0	ENST00000332351.3:c.196C>A	p.Pro66Thr	p.P66T	ENST00000332351	NM_024426.4	66	Ccg/Acg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67662454	67662454	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0010130-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	319	504	0	ENST00000264010.4:c.1700G>C	p.Arg567Pro	p.R567P	ENST00000264010	NM_006565.3	567	cGg/cCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991365	72991365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010130-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			643	384	537	0	ENST00000268489.5:c.2680G>T	p.Asp894Tyr	p.D894Y	ENST00000268489	NM_006885.3	894	Gat/Tat																																																																															
RARA	5914	MSKCC	GRCh37	17	38511517	38511517	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0010130-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			450	238	347	0	ENST00000254066.5:c.1015C>T	p.Arg339Cys	p.R339C	ENST00000254066	NM_000964.3	339	Cgc/Tgc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2214500	2214500	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010130-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			679	388	529	0	ENST00000398665.3:c.1828G>T	p.Asp610Tyr	p.D610Y	ENST00000398665	NM_032482.2	610	Gac/Tac																																																																															
AR	367	MSKCC	GRCh37	X	66766439	66766439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010130-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			265	184	269	0	ENST00000374690.3:c.1451C>A	p.Thr484Asn	p.T484N	ENST00000374690	NM_000044.3	484	aCt/aAt																																																																															
ATRX	546	MSKCC	GRCh37	X	76777855	76777855	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010130-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			684	309	539	0	ENST00000373344.5:c.6861G>T	p.Met2287Ile	p.M2287I	ENST00000373344	NM_000489.3	2287	atG/atT																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872017	35872019	+	inframe_deletion	In_Frame_Del	DEL	ACG	ACG	-			P-0010130-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	261	351	0	ENST00000216797.5:c.594_596delCGT	p.Ile198_Val199delinsMet	p.I198_V199delinsM	ENST00000216797	NM_020529.2	198	atCGTg/atg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030513	47030513	+	intron_variant	Intron	DEL	C	C	-			P-0010130-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			745	409	649	0	ENST00000329236.7:c.201+1620delC		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
MUTYH	4595	MSKCC	GRCh37	1	45797912	45797912	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010130-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			667	374	520	0	ENST00000372115.3:c.817G>T	p.Ala273Ser	p.A273S	ENST00000372115	NM_001048171.1	273	Gcc/Tcc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21624426	21624426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010130-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			715	372	567	0	ENST00000421138.2:c.1603C>T	p.Pro535Ser	p.P535S	ENST00000421138		535	Ccc/Tcc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865761	57865761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010130-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			784	348	504	0	ENST00000228682.2:c.3238C>T	p.Pro1080Ser	p.P1080S	ENST00000228682	NM_005269.2	1080	Ccc/Tcc																																																																															
SETD8	387893	MSKCC	GRCh37	12	123879747	123879747	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010130-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			139	79	120	0	ENST00000330479.4:c.443C>G	p.Thr148Ser	p.T148S	ENST00000330479	NM_020382.3	148	aCc/aGc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32944557	32944557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010130-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			246	264	496	0	ENST00000380152.3:c.8350C>T	p.Arg2784Trp	p.R2784W	ENST00000380152		2784	Cgg/Tgg																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881534	111881534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010130-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			589	328	499	0	ENST00000393256.3:c.212G>A	p.Gly71Asp	p.G71D	ENST00000393256	NM_006538.4	71	gGc/gAc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143226641	143226660	+	frameshift_variant	Frame_Shift_Del	DEL	GACTTCAGCAGCTCTCCCAC	GACTTCAGCAGCTCTCCCAC	-			P-0010130-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			934	134	446	0	ENST00000262992.4:c.454_473delGTGGGAGAGCTGCTGAAGTC	p.Val152LysfsTer32	p.V152Kfs*32	ENST00000262992	NM_001101669.1	152	GTGGGAGAGCTGCTGAAGTCa/a																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39074240	39074240	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010130-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			760	279	394	0	ENST00000357387.3:c.70G>C	p.Glu24Gln	p.E24Q	ENST00000357387	NM_152756.3	24	Gag/Cag																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5549606	5549606	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0010130-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1217	312	419	0	ENST00000397747.3:c.631+2T>C		p.X211_splice	ENST00000397747	NM_025239.3	211																																																																																
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			780	233	835	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			606	127	665	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672219	86672219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			380	45	403	1	ENST00000274376.6:c.2021G>A	p.Arg674His	p.R674H	ENST00000274376	NM_002890.2	674	cGc/cAc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466558	120466558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			634	192	554	1	ENST00000256646.2:c.4561G>T	p.Gly1521Trp	p.G1521W	ENST00000256646	NM_024408.3	1521	Ggg/Tgg																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47607041	47607041	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			596	171	751	0	ENST00000263735.4:c.791T>C	p.Leu264Pro	p.L264P	ENST00000263735	NM_002354.2	264	cTa/cCa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390201	89390201	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			377	36	396	0	ENST00000336596.2:c.950C>A	p.Pro317His	p.P317H	ENST00000336596	NM_005233.5	317	cCt/cAt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968212	134968212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			648	81	585	0	ENST00000398015.3:c.2725G>A	p.Asp909Asn	p.D909N	ENST00000398015	NM_004441.4	909	Gac/Aac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968311	2968311	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			999	82	801	0	ENST00000396946.4:c.1675A>T	p.Ser559Cys	p.S559C	ENST00000396946	NM_032415.4	559	Agc/Tgc																																																																															
POLE	5426	MSKCC	GRCh37	12	133220509	133220509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			796	57	760	0	ENST00000320574.5:c.4204G>A	p.Val1402Met	p.V1402M	ENST00000320574	NM_006231.2	1402	Gtg/Atg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15378289	15378289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			684	105	755	1	ENST00000263377.2:c.497C>T	p.Thr166Ile	p.T166I	ENST00000263377	NM_058243.2	166	aCa/aTa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022481	31022481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			301	21	269	0	ENST00000375687.4:c.1966G>A	p.Asp656Asn	p.D656N	ENST00000375687	NM_015338.5	656	Gat/Aat																																																																															
AR	367	MSKCC	GRCh37	X	66765427	66765427	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			330	24	352	0	ENST00000374690.3:c.439C>G	p.Gln147Glu	p.Q147E	ENST00000374690	NM_000044.3	147	Cag/Gag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411605	63411606	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			444	79	485	0	ENST00000330258.3:c.1561_1562delinsTT	p.Gly521Leu	p.G521L	ENST00000330258	NM_152424.3	521	GGa/TTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8317917	8317917	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			600	32	547	0	ENST00000356435.5:c.5696C>A	p.Ala1899Asp	p.A1899D	ENST00000356435		1899	gCc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425634	49425634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			569	150	750	0	ENST00000301067.7:c.12854G>T	p.Gly4285Val	p.G4285V	ENST00000301067	NM_003482.3	4285	gGc/gTc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046590	30046590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			673	37	648	0	ENST00000331968.5:c.2593G>A	p.Asp865Asn	p.D865N	ENST00000331968	NM_002742.2	865	Gat/Aat																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198274556	198274556	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			690	37	587	1	ENST00000335508.6:c.842A>T	p.His281Leu	p.H281L	ENST00000335508	NM_012433.2	281	cAt/cTt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023118	31023118	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			681	43	630	0	ENST00000375687.4:c.2603T>A	p.Leu868His	p.L868H	ENST00000375687	NM_015338.5	868	cTt/cAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739108	40739108	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			726	91	705	0	ENST00000373198.4:c.3176G>C	p.Arg1059Pro	p.R1059P	ENST00000373198	NM_133170.3	1059	cGg/cCg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534484	187534484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748020206		P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			428	36	422	0	ENST00000441802.2:c.9242C>T	p.Thr3081Met	p.T3081M	ENST00000441802	NM_005245.3	3081	aCg/aTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521857	157521857	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			522	28	453	0	ENST00000346085.5:c.4129G>T	p.Asp1377Tyr	p.D1377Y	ENST00000346085	NM_020732.3	1377	Gac/Tac																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931890	68931890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			891	89	811	0	ENST00000288368.4:c.320C>T	p.Thr107Ile	p.T107I	ENST00000288368	NM_024870.2	107	aCc/aTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376047	8376047	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			533	29	462	0	ENST00000356435.5:c.4550C>G	p.Thr1517Ser	p.T1517S	ENST00000356435		1517	aCc/aGc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528773	8528773	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			434	25	403	0	ENST00000356435.5:c.359A>C	p.Gln120Pro	p.Q120P	ENST00000356435		120	cAa/cCa																																																																															
TEK	7010	MSKCC	GRCh37	9	27158002	27158002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011142-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			838	109	810	0	ENST00000380036.4:c.226C>A	p.Gln76Lys	p.Q76K	ENST00000380036	NM_000459.3	76	Caa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0011243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1085	735	547	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
LMO1	4004	MSKCC	GRCh37	11	8252051	8252051	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0011243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			570	222	348	0	ENST00000335790.3:c.26G>T	p.Gly9Val	p.G9V	ENST00000335790	NM_002315.2	9	gGc/gTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610247	10610247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			696	365	690	1	ENST00000171111.5:c.463G>T	p.Val155Phe	p.V155F	ENST00000171111	NM_203500.1	155	Gtc/Ttc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81557479	81557479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	291	491	0	ENST00000298171.2:c.459C>A	p.Phe153Leu	p.F153L	ENST00000298171	NM_000369.2	153	ttC/ttA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099454	27099454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			565	250	387	0	ENST00000324856.7:c.3691G>T	p.Asp1231Tyr	p.D1231Y	ENST00000324856	NM_006015.4	1231	Gat/Tat																																																																															
PGR	5241	MSKCC	GRCh37	11	100998843	100998843	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			842	361	630	1	ENST00000325455.5:c.959C>A	p.Thr320Asn	p.T320N	ENST00000325455	NM_001202474.3	320	aCt/aAt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28599073	28599073	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			480	289	472	0	ENST00000241453.7:c.2215G>T	p.Gly739Cys	p.G739C	ENST00000241453	NM_004119.2	739	Ggt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828666	72828666	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			786	319	508	0	ENST00000268489.5:c.7915C>T	p.Gln2639Ter	p.Q2639*	ENST00000268489	NM_006885.3	2639	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1219321	1219321	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0011243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			514	269	461	0	ENST00000326873.7:c.375-2A>C		p.X125_splice	ENST00000326873	NM_000455.4	125																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66286284	66286284	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0011243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	170	243	0	ENST00000273854.3:c.1403-1G>T		p.X468_splice	ENST00000273854	NM_004439.5	468																																																																																
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			332	44	701	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141502	11141502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	46	818	1	ENST00000344626.4:c.3479G>T	p.Gly1160Val	p.G1160V	ENST00000344626	NM_003072.3	1160	gGg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094376	27094377	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0012476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			537	61	712	1	ENST00000324856.7:c.3084_3085delGGinsCT	p.Ala1029Ser	p.A1029S	ENST00000324856	NM_006015.4	1028	ctGGcc/ctCTcc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163315581	163315581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	138	726	0	ENST00000271452.3:c.921G>T	p.Arg307Ser	p.R307S	ENST00000271452	NM_145697.2	307	agG/agT																																																																															
RET	5979	MSKCC	GRCh37	10	43607607	43607607	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			536	42	915	0	ENST00000355710.3:c.1583G>C	p.Cys528Ser	p.C528S	ENST00000355710	NM_020975.4	528	tGt/tCt																																																																															
PGR	5241	MSKCC	GRCh37	11	100999621	100999621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			688	118	1176	0	ENST00000325455.5:c.181C>T	p.Pro61Ser	p.P61S	ENST00000325455	NM_001202474.3	61	Cct/Tct																																																																															
ATM	472	MSKCC	GRCh37	11	108141818	108141818	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			844	119	790	0	ENST00000278616.4:c.2866G>T	p.Gly956Ter	p.G956*	ENST00000278616	NM_000051.3	956	Gga/Tga																																																																															
RAB35	11021	MSKCC	GRCh37	12	120546261	120546261	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			544	43	846	0	ENST00000229340.5:c.63G>C	p.Lys21Asn	p.K21N	ENST00000229340	NM_006861.6	21	aaG/aaC																																																																															
RAF1	5894	MSKCC	GRCh37	3	12650279	12650279	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			932	81	798	0	ENST00000251849.4:c.567C>G	p.Asn189Lys	p.N189K	ENST00000251849	NM_002880.3	189	aaC/aaG																																																																															
PMS2	5395	MSKCC	GRCh37	7	6035242	6035242	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			682	65	689	0	ENST00000265849.7:c.826T>G	p.Cys276Gly	p.C276G	ENST00000265849	NM_000535.5	276	Tgc/Ggc																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540214	23540214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			285	47	520	1	ENST00000380871.4:c.189G>T	p.Glu63Asp	p.E63D	ENST00000380871	NM_006167.3	63	gaG/gaT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032555	47032555	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			446	27	740	0	ENST00000329236.7:c.230T>G	p.Val77Gly	p.V77G	ENST00000329236	NM_001204466.1	77	gTg/gGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012716-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			95	44	887	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48916743	48916744	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012825-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			325	534	280	0	ENST00000267163.4:c.274dup	p.Ile92AsnfsTer18	p.I92Nfs*18	ENST00000267163	NM_000321.2	91	-/A																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1261	523	498	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419986	41419986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			667	586	353	2	ENST00000373198.4:c.335G>A	p.Arg112His	p.R112H	ENST00000373198	NM_133170.3	112	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	732	449	0	ENST00000269305.4:c.568C>A	p.Pro190Thr	p.P190T	ENST00000269305	NM_001126112.2	190	Cct/Act																																																																															
SPEN	23013	MSKCC	GRCh37	1	16203094	16203094	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			757	188	372	0	ENST00000375759.3:c.802T>G	p.Ser268Ala	p.S268A	ENST00000375759	NM_015001.2	268	Tcc/Gcc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337663	73337663	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			896	156	307	0	ENST00000377767.4:c.2053C>G	p.His685Asp	p.H685D	ENST00000377767	NM_014953.3	685	Cat/Gat																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448387	56448387	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	660	482	0	ENST00000407977.2:c.260del	p.Pro87ArgfsTer71	p.P87Rfs*71	ENST00000407977		87	cCg/cg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250399	10250399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1479	364	352	0	ENST00000340748.4:c.3853C>T	p.Arg1285Cys	p.R1285C	ENST00000340748		1285	Cgc/Tgc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39728699	39728699	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			858	90	302	0	ENST00000361337.2:c.979A>C	p.Ile327Leu	p.I327L	ENST00000361337	NM_003286.2	327	Atc/Ctc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93973626	93973626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			884	215	370	0	ENST00000369303.4:c.1750G>A	p.Gly584Ser	p.G584S	ENST00000369303	NM_004440.3	584	Ggt/Agt																																																																															
BRAF	673	MSKCC	GRCh37	7	140487343	140487345	+	splice_region_variant,intron_variant	Splice_Region	DEL	CTT	CTT	-			P-0013290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	1188	654	0	ENST00000288602.6:c.1177+3_1177+5del		p.X393_splice	ENST00000288602	NM_004333.4	393																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0014262-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			730	155	617	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs17849781		P-0014262-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			826	168	847	0	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0014262-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			391	39	339	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48023042	48023042	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014262-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	25	318	0	ENST00000234420.5:c.467C>G	p.Ser156Ter	p.S156*	ENST00000234420	NM_000179.2	156	tCa/tGa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033962	48033962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014262-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			485	41	486	1	ENST00000234420.5:c.4046C>T	p.Ala1349Val	p.A1349V	ENST00000234420	NM_000179.2	1349	gCt/gTt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212252715	212252715	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0014262-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	27	263	0	ENST00000342788.4:c.3138T>G	p.Ser1046Arg	p.S1046R	ENST00000342788	NM_005235.2	1046	agT/agG																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0014306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			644	72	474	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916924	178916926	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0014306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			569	120	403	0	ENST00000263967.3:c.311_313del	p.Pro104_Val105delinsLeu	p.P104_V105delinsL	ENST00000263967	NM_006218.2	104	cCAGta/cta																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346832	89346832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			197	26	209	0	ENST00000301030.4:c.6118G>A	p.Gly2040Arg	p.G2040R	ENST00000301030	NM_001256183.1	2040	Gga/Aga																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197160	26197160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			689	53	311	1	ENST00000356476.2:c.319G>T	p.Asp107Tyr	p.D107Y	ENST00000356476		107	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014983-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			724	746	494	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023006	27023006	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014983-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			125	16	62	0	ENST00000324856.7:c.112G>T	p.Glu38Ter	p.E38*	ENST00000324856	NM_006015.4	38	Gag/Tag																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68758650	68758650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014983-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	194	368	0	ENST00000487270.1:c.806C>T	p.Ser269Phe	p.S269F	ENST00000487270	NM_133509.3	269	tCt/tTt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498474	89498474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014983-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			569	132	341	0	ENST00000336596.2:c.2446G>A	p.Glu816Lys	p.E816K	ENST00000336596	NM_005233.5	816	Gag/Aag																																																																															
KDR	3791	MSKCC	GRCh37	4	55964338	55964338	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014983-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			947	183	447	0	ENST00000263923.4:c.2475C>A	p.Ser825Arg	p.S825R	ENST00000263923	NM_002253.2	825	agC/agA																																																																															
HGF	3082	MSKCC	GRCh37	7	81392170	81392170	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014983-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			522	46	178	0	ENST00000222390.5:c.107G>C	p.Arg36Thr	p.R36T	ENST00000222390	NM_000601.4	36	aGa/aCa																																																																															
MLL3	58508	MSKCC	GRCh37	7	151836846	151836846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014983-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1339	116	494	0	ENST00000262189.6:c.14374G>A	p.Glu4792Lys	p.E4792K	ENST00000262189	NM_170606.2	4792	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7572990	7572991	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	A			P-0014983-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			609	184	380	1	ENST00000269305.4:c.1118_1119delinsT	p.Lys373MetfsTer49	p.K373Mfs*49	ENST00000269305	NM_001126112.2	373	aAG/aT																																																																															
JAK1	3716	MSKCC	GRCh37	1	65344813	65344813	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014996-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			266	21	260	0	ENST00000342505.4:c.224A>G	p.His75Arg	p.H75R	ENST00000342505	NM_002227.2	75	cAc/cGc																																																																															
HGF	3082	MSKCC	GRCh37	7	81388055	81388055	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014996-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			472	56	489	0	ENST00000222390.5:c.320G>C	p.Gly107Ala	p.G107A	ENST00000222390	NM_000601.4	107	gGa/gCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0015061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	222	523	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
MLL3	58508	MSKCC	GRCh37	7	151902197	151902197	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs138119145		P-0015061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	48	623	0	ENST00000262189.6:c.3955G>C	p.Asp1319His	p.D1319H	ENST00000262189	NM_170606.2	1319	Gat/Cat																																																																															
BBC3	27113	MSKCC	GRCh37	19	47725119	47725119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1544	125	853	0	ENST00000449228.1:c.625C>T	p.His209Tyr	p.H209Y	ENST00000449228	NM_001127240.2	209	Cat/Tat																																																																															
RB1	5925	MSKCC	GRCh37	13	48919214	48919214	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0015061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	57	97	0	ENST00000267163.4:c.381-2A>G		p.X127_splice	ENST00000267163	NM_000321.2	127																																																																																
DICER1	23405	MSKCC	GRCh37	14	95577712	95577714	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0015061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	144	338	0	ENST00000343455.3:c.2196_2198del	p.Glu733del	p.E733del	ENST00000343455	NM_177438.2	732	gaAGAg/gag																																																																															
CIC	23152	MSKCC	GRCh37	19	42793115	42793115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1446	231	760	0	ENST00000575354.2:c.1007G>T	p.Cys336Phe	p.C336F	ENST00000575354	NM_015125.3	336	tGt/tTt																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70982045	70982045	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1584	222	720	0	ENST00000276594.2:c.51C>A	p.Tyr17Ter	p.Y17*	ENST00000276594	NM_024504.3	17	taC/taA																																																																															
BIRC3	330	MSKCC	GRCh37	11	102198842	102198842	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	33	519	0	ENST00000263464.3:c.1013A>T	p.Tyr338Phe	p.Y338F	ENST00000263464	NM_001165.4	338	tAc/tTc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244937	41244937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	59	571	1	ENST00000357654.3:c.2611C>T	p.Pro871Ser	p.P871S	ENST00000357654	NM_007294.3	871	Ccg/Tcg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244945	41244945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	61	577	0	ENST00000357654.3:c.2603C>T	p.Ser868Leu	p.S868L	ENST00000357654	NM_007294.3	868	tCa/tTa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244957	41244957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	64	607	1	ENST00000357654.3:c.2591C>T	p.Ser864Leu	p.S864L	ENST00000357654	NM_007294.3	864	tCa/tTa																																																																															
EP300	2033	MSKCC	GRCh37	22	41564822	41564822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	227	597	0	ENST00000263253.7:c.4123G>A	p.Gly1375Ser	p.G1375S	ENST00000263253	NM_001429.3	1375	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	747	495	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3831226	3831226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	168	347	0	ENST00000262367.5:c.1655C>T	p.Pro552Leu	p.P552L	ENST00000262367	NM_004380.2	552	cCg/cTg																																																																															
ATM	472	MSKCC	GRCh37	11	108224493	108224493	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	159	169	0	ENST00000278616.4:c.8672G>A	p.Gly2891Asp	p.G2891D	ENST00000278616	NM_000051.3	2891	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087965	27087965	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0015078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	209	539	2	ENST00000324856.7:c.2251+1G>T		p.X751_splice	ENST00000324856	NM_006015.4	751																																																																																
CYSLTR2	57105	MSKCC	GRCh37	13	49281502	49281502	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	175	495	0	ENST00000282018.3:c.549T>A	p.Ser183Arg	p.S183R	ENST00000282018	NM_020377.2	183	agT/agA																																																																															
IDH1	3417	MSKCC	GRCh37	2	209108313	209108313	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	121	344	0	ENST00000345146.2:c.536C>A	p.Ala179Asp	p.A179D	ENST00000345146	NM_005896.2	179	gCc/gAc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185198275	185198275	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	192	424	0	ENST00000265026.3:c.2757G>T	p.Gln919His	p.Q919H	ENST00000265026	NM_004721.4	919	caG/caT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163255	32163255	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	1003	988	0	ENST00000375023.3:c.5971C>T	p.Gln1991Ter	p.Q1991*	ENST00000375023	NM_004557.3	1991	Caa/Taa																																																																															
MLL3	58508	MSKCC	GRCh37	7	151879144	151879144	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	1151	494	1	ENST00000262189.6:c.5801G>T	p.Arg1934Met	p.R1934M	ENST00000262189	NM_170606.2	1934	aGg/aTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	409	399	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	187	536	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459760	149459760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	85	512	0	ENST00000286301.3:c.447G>A	p.Met149Ile	p.M149I	ENST00000286301	NM_005211.3	149	atG/atA																																																																															
MPL	4352	MSKCC	GRCh37	1	43814616	43814616	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	272	570	0	ENST00000372470.3:c.1411C>G	p.Gln471Glu	p.Q471E	ENST00000372470	NM_005373.2	471	Caa/Gaa																																																																															
BCL10	8915	MSKCC	GRCh37	1	85736468	85736468	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	103	280	0	ENST00000370580.1:c.179C>G	p.Ser60Ter	p.S60*	ENST00000370580	NM_003921.4	60	tCa/tGa																																																																															
WT1	7490	MSKCC	GRCh37	11	32456273	32456273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	33	801	2	ENST00000332351.3:c.619G>A	p.Glu207Lys	p.E207K	ENST00000332351	NM_024426.4	207	Gag/Aag																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871001	12871001	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	228	349	2	ENST00000228872.4:c.228G>T	p.Trp76Cys	p.W76C	ENST00000228872	NM_004064.3	76	tgG/tgT																																																																															
MLL2	8085	MSKCC	GRCh37	12	49448320	49448320	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	59	535	0	ENST00000301067.7:c.391G>T	p.Glu131Ter	p.E131*	ENST00000301067	NM_003482.3	131	Gaa/Taa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109974	115109974	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	41	887	0	ENST00000257566.3:c.1904G>C	p.Arg635Pro	p.R635P	ENST00000257566	NM_016569.3	635	cGc/cCc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563179	21563179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	63	766	2	ENST00000382592.4:c.740C>T	p.Pro247Leu	p.P247L	ENST00000382592	NM_014572.2	247	cCg/cTg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81558915	81558915	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	155	493	0	ENST00000298171.2:c.508A>G	p.Asn170Asp	p.N170D	ENST00000298171	NM_000369.2	170	Aat/Gat																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349862	89349862	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	51	889	0	ENST00000301030.4:c.3088G>C	p.Glu1030Gln	p.E1030Q	ENST00000301030	NM_001256183.1	1030	Gag/Cag																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30321692	30321692	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs137920170		P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	172	588	0	ENST00000322652.5:c.1547G>T	p.Arg516Leu	p.R516L	ENST00000322652	NM_015355.2	516	cGc/cTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602856	10602856	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	133	819	0	ENST00000171111.5:c.722G>T	p.Cys241Phe	p.C241F	ENST00000171111	NM_203500.1	241	tGc/tTc																																																																															
CIC	23152	MSKCC	GRCh37	19	42793430	42793430	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144065857		P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	45	454	1	ENST00000575354.2:c.1232C>T	p.Ala411Val	p.A411V	ENST00000575354	NM_015125.3	411	gCg/gTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965835	25965846	+	inframe_deletion	In_Frame_Del	DEL	TAGTGCCCTGCC	TAGTGCCCTGCC	-			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	176	477	0	ENST00000435504.4:c.3360_3371del	p.Met1120_Tyr1124delinsIle	p.M1120_Y1124delinsI	ENST00000435504		1120	atGGCAGGGCACTAc/atc																																																																															
EP300	2033	MSKCC	GRCh37	22	41558740	41558740	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	50	387	0	ENST00000263253.7:c.3685G>C	p.Glu1229Gln	p.E1229Q	ENST00000263253	NM_001429.3	1229	Gaa/Caa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445091	89445091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	46	397	0	ENST00000336596.2:c.1411G>A	p.Glu471Lys	p.E471K	ENST00000336596	NM_005233.5	471	Gag/Aag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467617	66467617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	98	359	0	ENST00000273854.3:c.652G>C	p.Gly218Arg	p.G218R	ENST00000273854	NM_004439.5	218	Ggt/Cgt																																																																															
TAP1	6890	MSKCC	GRCh37	6	32820000	32820000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	57	558	0	ENST00000354258.4:c.910G>A	p.Val304Met	p.V304M	ENST00000354258	NM_000593.5	304	Gtg/Atg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141557689	141557689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	90	628	0	ENST00000220592.5:c.1626G>T	p.Met542Ile	p.M542I	ENST00000220592	NM_012154.3	542	atG/atT																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786395	135786395	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	75	460	0	ENST00000298552.3:c.1135A>G	p.Thr379Ala	p.T379A	ENST00000298552	NM_001162426.1	379	Aca/Gca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401858	139401858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	101	647	0	ENST00000277541.6:c.3542C>T	p.Ser1181Phe	p.S1181F	ENST00000277541	NM_017617.3	1181	tCt/tTt																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814797	139814797	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144427288		P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	103	641	0	ENST00000247668.2:c.790G>A	p.Ala264Thr	p.A264T	ENST00000247668	NM_021138.3	264	Gcg/Acg																																																																															
ARAF	369	MSKCC	GRCh37	X	47424249	47424249	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	71	581	0	ENST00000377045.4:c.254A>T	p.Glu85Val	p.E85V	ENST00000377045	NM_001654.4	85	gAg/gTg																																																																															
ARAF	369	MSKCC	GRCh37	X	47428972	47428972	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	61	663	0	ENST00000377045.4:c.1335C>G	p.Ile445Met	p.I445M	ENST00000377045	NM_001654.4	445	atC/atG																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223424	53223424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	47	660	0	ENST00000375401.3:c.3935G>A	p.Arg1312His	p.R1312H	ENST00000375401	NM_004187.3	1312	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	44	676	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0015097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	72	850	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	50	830	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46740336	46740336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	34	810	0	ENST00000371975.4:c.1816C>T	p.Arg606Trp	p.R606W	ENST00000371975	NM_003579.3	606	Cgg/Tgg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645920	67645920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	58	918	1	ENST00000264010.4:c.848G>A	p.Arg283His	p.R283H	ENST00000264010	NM_006565.3	283	cGt/cAt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49939859	49939859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	65	1069	2	ENST00000296474.3:c.1184G>A	p.Arg395Gln	p.R395Q	ENST00000296474	NM_002447.2	395	cGg/cAg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168654	56168655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	35	459	0	ENST00000399503.3:c.1509dup	p.Glu504ArgfsTer37	p.E504Rfs*37	ENST00000399503	NM_005921.1	503	cac/caCc																																																																															
MLL3	58508	MSKCC	GRCh37	7	151853290	151853290	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	49	599	0	ENST00000262189.6:c.11812G>A	p.Val3938Ile	p.V3938I	ENST00000262189	NM_170606.2	3938	Gtt/Att																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412596	139412596	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	58	741	0	ENST00000277541.6:c.1248C>G	p.Cys416Trp	p.C416W	ENST00000277541	NM_017617.3	416	tgC/tgG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	150	1020	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577501	7577501	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0015108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	123	945	1	ENST00000269305.4:c.780del	p.Ser261ValfsTer84	p.S261Vfs*84	ENST00000269305	NM_001126112.2	260	tcC/tc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016558	12016558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	64	601	1	ENST00000353533.5:c.694C>T	p.Pro232Ser	p.P232S	ENST00000353533	NM_003010.3	232	Cct/Tct																																																																															
ATM	472	MSKCC	GRCh37	11	108114801	108114810	+	frameshift_variant	Frame_Shift_Del	DEL	TTCCAAATTT	TTCCAAATTT	-			P-0015110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	321	821	0	ENST00000278616.4:c.620_629del	p.Ser207TrpfsTer20	p.S207Wfs*20	ENST00000278616	NM_000051.3	206	aaTTCCAAATTT/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	89	895	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	149	953	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044550	47044550	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	217	1273	1	ENST00000329236.7:c.1813G>T	p.Glu605Ter	p.E605*	ENST00000329236	NM_001204466.1	605	Gag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187560904	187560904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	128	686	1	ENST00000441802.2:c.3614G>A	p.Arg1205Gln	p.R1205Q	ENST00000441802	NM_005245.3	1205	cGa/cAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163617	47163618	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAT			P-0015112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	87	599	0	ENST00000409792.3:c.2505_2508dup	p.Asp837MetfsTer2	p.D837Mfs*2	ENST00000409792	NM_014159.6	836	-/ATGT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165333	47165333	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	78	518	0	ENST00000409792.3:c.793del	p.Glu265AsnfsTer3	p.E265Nfs*3	ENST00000409792	NM_014159.6	265	Gaa/aa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524631	187524631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	182	1061	2	ENST00000441802.2:c.11049G>T	p.Leu3683Phe	p.L3683F	ENST00000441802	NM_005245.3	3683	ttG/ttT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187535442	187535442	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	99	645	0	ENST00000441802.2:c.9132G>C	p.Gln3044His	p.Q3044H	ENST00000441802	NM_005245.3	3044	caG/caC																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120456	94120456	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	116	710	0	ENST00000369303.4:c.595A>G	p.Lys199Glu	p.K199E	ENST00000369303	NM_004440.3	199	Aaa/Gaa																																																																															
MED12	9968	MSKCC	GRCh37	X	70356438	70356438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1144	167	1172	1	ENST00000374080.3:c.5333G>T	p.Ser1778Ile	p.S1778I	ENST00000374080		1778	aGt/aTt																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589765	69589765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	29	290	2	ENST00000168712.1:c.88G>A	p.Ala30Thr	p.A30T	ENST00000168712	NM_002007.2	30	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0015114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	241	1166	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434793	99434793	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201529410		P-0015114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	183	990	1	ENST00000268035.6:c.880G>A	p.Glu294Lys	p.E294K	ENST00000268035	NM_000875.3	294	Gag/Aag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119873	70119874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	115	1558	0	ENST00000245479.2:c.876dup	p.Glu293ArgfsTer3	p.E293Rfs*3	ENST00000245479	NM_000346.3	292	aac/aaCc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223032	5223032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	226	1403	1	ENST00000357368.4:c.2771C>T	p.Pro924Leu	p.P924L	ENST00000357368	NM_002850.3	924	cCg/cTg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25459802	25459802	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0015114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	200	1028	0	ENST00000264709.3:c.2478+3C>T		p.X826_splice	ENST00000264709	NM_175629.2	826																																																																																
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	42	607	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
SMO	6608	MSKCC	GRCh37	7	128852242	128852242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140172891		P-0015114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	115	1582	1	ENST00000249373.3:c.2314C>T	p.Arg772Cys	p.R772C	ENST00000249373	NM_005631.4	772	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	307	486	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0015121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	157	756	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579521	7579521	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	390	737	0	ENST00000269305.4:c.166delG	p.Glu56LysfsTer67	p.E56Kfs*67	ENST00000269305	NM_001126112.2	56	Gaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0015121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	138	254	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455082	50455082	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	236	390	0	ENST00000331340.3:c.629A>G	p.Tyr210Cys	p.Y210C	ENST00000331340	NM_006060.4	210	tAt/tGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	287	508	0	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21620098	21620098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	301	491	1	ENST00000382592.4:c.68G>A	p.Arg23His	p.R23H	ENST00000382592	NM_014572.2	23	cGt/cAt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075157	16075157	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	206	310	0	ENST00000268712.3:c.395C>G	p.Pro132Arg	p.P132R	ENST00000268712	NM_006311.3	132	cCg/cGg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37048502	37048502	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	263	412	0	ENST00000231790.2:c.401A>T	p.Lys134Ile	p.K134I	ENST00000231790	NM_000249.3	134	aAa/aTa																																																																															
ABL1	25	MSKCC	GRCh37	9	133760928	133760928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	524	700	6	ENST00000318560.5:c.3251G>A	p.Arg1084Gln	p.R1084Q	ENST00000318560	NM_005157.4	1084	cGa/cAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0015128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	371	437	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0015128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	487	602	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65312338	65312338	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	392	462	0	ENST00000342505.4:c.1981G>T	p.Val661Leu	p.V661L	ENST00000342505	NM_002227.2	661	Gtg/Ttg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0015129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	760	480	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0015129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	183	623	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856116	111856116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	99	449	0	ENST00000341259.2:c.167C>T	p.Ala56Val	p.A56V	ENST00000341259	NM_005475.2	56	gCg/gTg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37856477	37856510	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	GCCGCAGTGAGCACCATGGAGCTGGCGGCCTTGT	GCCGCAGTGAGCACCATGGAGCTGGCGGCCTTGT	-			P-0015131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	34	255	0	ENST00000269571.5:c.-10_24delAGTGAGCACCATGGAGCTGGCGGCCTTGTGCCGC		p.*4fs*	ENST00000269571		4																																																																																
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0015132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	48	403	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685298	89685299	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0015132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	19	262	0	ENST00000371953.3:c.194dup	p.Tyr65Ter	p.Y65*	ENST00000371953	NM_000314.4	65	tac/tAac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913718	32913723	+	inframe_deletion	In_Frame_Del	DEL	CAGTAG	CAGTAG	-			P-0015132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	17	435	0	ENST00000380152.3:c.5228_5233del	p.Ser1743_Ser1744del	p.S1743_S1744del	ENST00000380152		1742	aaCAGTAGc/aac																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30194784	30194784	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	61	576	2	ENST00000331968.5:c.361A>G	p.Ser121Gly	p.S121G	ENST00000331968	NM_002742.2	121	Agt/Ggt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532726	187532726	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	66	381	0	ENST00000441802.2:c.9667A>C	p.Ile3223Leu	p.I3223L	ENST00000441802	NM_005245.3	3223	Ata/Cta																																																																															
RB1	5925	MSKCC	GRCh37	13	48923117	48923117	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	71	317	0	ENST00000267163.4:c.566del	p.Leu189TrpfsTer3	p.L189Wfs*3	ENST00000267163	NM_000321.2	189	Ttg/tg																																																																															
RB1	5925	MSKCC	GRCh37	13	48923126	48923126	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	75	331	0	ENST00000267163.4:c.574A>G	p.Lys192Glu	p.K192E	ENST00000267163	NM_000321.2	192	Aaa/Gaa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641575	23641575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	47	546	0	ENST00000261584.4:c.1900C>T	p.Pro634Ser	p.P634S	ENST00000261584	NM_024675.3	634	Cca/Tca																																																																															
ERF	2077	MSKCC	GRCh37	19	42752996	42752996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	90	607	0	ENST00000222329.4:c.1268C>T	p.Pro423Leu	p.P423L	ENST00000222329	NM_006494.2	423	cCa/cTa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38971990	38971990	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	20	458	0	ENST00000357387.3:c.961A>G	p.Met321Val	p.M321V	ENST00000357387	NM_152756.3	321	Atg/Gtg																																																																															
RET	5979	MSKCC	GRCh37	10	43609095	43609095	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	334	701	0	ENST00000355710.3:c.1851G>C	p.Lys617Asn	p.K617N	ENST00000355710	NM_020975.4	617	aaG/aaC																																																																															
TET1	80312	MSKCC	GRCh37	10	70426801	70426801	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0015138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	130	260	1	ENST00000373644.4:c.4462-1G>T		p.X1488_splice	ENST00000373644	NM_030625.2	1488																																																																																
MLL2	8085	MSKCC	GRCh37	12	49431717	49431717	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	276	601	0	ENST00000301067.7:c.9422T>C	p.Val3141Ala	p.V3141A	ENST00000301067	NM_003482.3	3141	gTa/gCa																																																																															
CBFB	865	MSKCC	GRCh37	16	67100692	67100716	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCGAGCCCAGGTAGGGTAACATCAG	GCGAGCCCAGGTAGGGTAACATCAG	-			P-0015138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	176	508	0	ENST00000412916.2:c.392_399+17del		p.X131_splice	ENST00000412916		131																																																																																
MSH2	4436	MSKCC	GRCh37	2	47703681	47703685	+	frameshift_variant	Frame_Shift_Del	DEL	TGAAA	TGAAA	-			P-0015138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	210	420	0	ENST00000233146.2:c.2183_2187del	p.Glu728ValfsTer20	p.E728Vfs*20	ENST00000233146	NM_000251.2	727	gcTGAAAtg/gctg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517817	187517817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	184	263	0	ENST00000441802.2:c.12877C>A	p.His4293Asn	p.H4293N	ENST00000441802	NM_005245.3	4293	Cac/Aac																																																																															
TET1	80312	MSKCC	GRCh37	10	70426883	70426883	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	182	350	0	ENST00000373644.4:c.4543A>C	p.Met1515Leu	p.M1515L	ENST00000373644	NM_030625.2	1515	Atg/Ctg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	157	412	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	88	249	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894365		P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	301	445	1	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164721	47164721	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	201	310	0	ENST00000409792.3:c.1405T>C	p.Tyr469His	p.Y469H	ENST00000409792	NM_014159.6	469	Tac/Cac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105622	11105622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	105	606	0	ENST00000344626.4:c.1538G>A	p.Arg513Gln	p.R513Q	ENST00000344626	NM_003072.3	513	cGg/cAg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868176	45868176	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140175332		P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	396	643	0	ENST00000391945.4:c.514G>A	p.Ala172Thr	p.A172T	ENST00000391945	NM_000400.3	172	Gct/Act																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119796	17119796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	348	555	0	ENST00000285071.4:c.1198G>A	p.Val400Ile	p.V400I	ENST00000285071	NM_144997.5	400	Gtc/Atc																																																																															
MED12	9968	MSKCC	GRCh37	X	70351950	70351950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	216	551	2	ENST00000374080.3:c.4147G>A	p.Ala1383Thr	p.A1383T	ENST00000374080		1383	Gcc/Acc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187173	11187173	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	312	446	0	ENST00000361445.4:c.6245A>T	p.Gln2082Leu	p.Q2082L	ENST00000361445	NM_004958.3	2082	cAa/cTa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465301	120465301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	240	309	14	ENST00000256646.2:c.4960G>A	p.Ala1654Thr	p.A1654T	ENST00000256646	NM_024408.3	1654	Gcc/Acc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88681327	88681327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	159	253	1	ENST00000372037.3:c.1217G>A	p.Arg406His	p.R406H	ENST00000372037	NM_004329.2	406	cGc/cAc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573165	64573165	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	343	477	0	ENST00000337652.1:c.1142T>C	p.Leu381Pro	p.L381P	ENST00000337652	NM_130803.2	381	cTg/cCg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3799632	3799632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	249	401	1	ENST00000262367.5:c.3832G>A	p.Glu1278Lys	p.E1278K	ENST00000262367	NM_004380.2	1278	Gaa/Aaa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010455	48010455	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	285	418	0	ENST00000234420.5:c.83C>A	p.Ser28Ter	p.S28*	ENST00000234420	NM_000179.2	28	tCa/tAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125245	47125245	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	263	314	0	ENST00000409792.3:c.6025G>C	p.Ala2009Pro	p.A2009P	ENST00000409792	NM_014159.6	2009	Gcc/Ccc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287859	33287859	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	381	457	0	ENST00000374542.5:c.1394del	p.Glu465GlyfsTer63	p.E465Gfs*63	ENST00000374542	NM_001141970.1	465	gAg/gg																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64289969	64289969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	211	302	0	ENST00000370651.3:c.412C>T	p.Arg138Cys	p.R138C	ENST00000370651	NM_003463.4	138	Cgt/Tgt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300845	137300845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	129	600	3	ENST00000481739.1:c.490C>T	p.Arg164Cys	p.R164C	ENST00000481739	NM_002957.4	164	Cgc/Tgc																																																																															
SDHA	6389	MSKCC	GRCh37	5	233732	233734	+	missense_variant	Missense_Mutation	ONP	TCC	TCC	CCG			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	135	395	0	ENST00000264932.6:c.1036_1038delinsCCG	p.Ser346Pro	p.S346P	ENST00000264932	NM_004168.2	346	TCC/CCG																																																																															
MET	4233	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0015141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	1007	599	0	ENST00000397752.3:c.3028+2T>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
NEGR1	257194	MSKCC	GRCh37	1	72076745	72076745	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	140	459	0	ENST00000357731.5:c.752C>A	p.Pro251Gln	p.P251Q	ENST00000357731	NM_173808.2	251	cCg/cAg																																																																															
ALK	238	MSKCC	GRCh37	2	29449929	29449929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	193	779	1	ENST00000389048.3:c.2926C>A	p.His976Asn	p.H976N	ENST00000389048	NM_004304.4	976	Cac/Aac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40757400	40757400	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0015141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	113	535	0	ENST00000373198.4:c.2898C>G	p.Tyr966Ter	p.Y966*	ENST00000373198	NM_133170.3	966	taC/taG																																																																															
PREX2	80243	MSKCC	GRCh37	8	69032495	69032506	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTCACTCCAG	ATCTCACTCCAG	T			P-0015141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	89	572	0	ENST00000288368.4:c.3569_3580delinsT	p.Tyr1190LeufsTer48	p.Y1190Lfs*48	ENST00000288368	NM_024870.2	1190	tATCTCACTCCAGgc/tTgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	32	399	2	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0015148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	472	424	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056206	26056206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	370	321	0	ENST00000343677.2:c.451G>A	p.Ala151Thr	p.A151T	ENST00000343677	NM_005319.3	151	Gct/Act																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745476	162745476	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	255	285	0	ENST00000367921.3:c.1891C>G	p.Arg631Gly	p.R631G	ENST00000367921	NM_006182.2	631	Cgg/Ggg																																																																															
CBL	867	MSKCC	GRCh37	11	119146812	119146812	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	287	392	0	ENST00000264033.4:c.975C>G	p.Phe325Leu	p.F325L	ENST00000264033	NM_005188.3	325	ttC/ttG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0015149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	119	456	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439913	56439914	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0015149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	100	439	0	ENST00000407977.2:c.678_679del	p.His226GlnfsTer32	p.H226Qfs*32	ENST00000407977		226	caCAgc/cagc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0015152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	31	406	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061212	38061235	+	inframe_deletion	In_Frame_Del	DEL	GTAGCAGCCGTTCTCGAACATGTT	GTAGCAGCCGTTCTCGAACATGTT	-			P-0015155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	89	388	0	ENST00000250448.2:c.754_777del	p.Asn252_Tyr259del	p.N252_Y259del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTGCTAC/-																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117784	70117784	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0015155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	54	431	0	ENST00000245479.2:c.252C>G	p.Tyr84Ter	p.Y84*	ENST00000245479	NM_000346.3	84	taC/taG																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	76	346	0				ENST00000310581	NM_198253.2																																																																																	
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0015177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	316	649	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044595	47044595	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	96	525	1	ENST00000329236.7:c.1858G>T	p.Glu620Ter	p.E620*	ENST00000329236	NM_001204466.1	620	Gag/Tag																																																																															
STAG2	10735	MSKCC	GRCh37	X	123171455	123171455	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	98	333	0	ENST00000218089.9:c.367C>T	p.Gln123Ter	p.Q123*	ENST00000218089	NM_001042749.1	123	Cag/Tag																																																																															
MLL3	58508	MSKCC	GRCh37	7	151945036	151945036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	69	610	0	ENST00000262189.6:c.2483C>T	p.Pro828Leu	p.P828L	ENST00000262189	NM_170606.2	828	cCa/cTa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120374	70120374	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1416	148	1276	0	ENST00000245479.2:c.1376G>C	p.Gly459Ala	p.G459A	ENST00000245479	NM_000346.3	459	gGc/gCc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39567860	39567860	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0015177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	43	298	0	ENST00000262039.4:c.616G>T	p.Glu206Ter	p.E206*	ENST00000262039	NM_002647.2	206	Gag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739108	40739109	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0015177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	70	599	2	ENST00000373198.4:c.3175_3176delinsTT	p.Arg1059Leu	p.R1059L	ENST00000373198	NM_133170.3	1059	CGg/TTg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119666165	119666165	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	62	541	0	ENST00000316626.5:c.316C>G	p.His106Asp	p.H106D	ENST00000316626		106	Cac/Gac																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523493	106523493	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	60	401	0	ENST00000359195.3:c.2645T>A	p.Val882Glu	p.V882E	ENST00000359195	NM_002649.2	882	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	214	935	0	ENST00000269305.4:c.451C>G	p.Pro151Ala	p.P151A	ENST00000269305	NM_001126112.2	151	Ccc/Gcc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500901	8500901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	264	508	2	ENST00000356435.5:c.1981G>A	p.Glu661Lys	p.E661K	ENST00000356435		661	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68845598	68845618	+	inframe_deletion	In_Frame_Del	DEL	ATGGAGGTCACAGCCACAGAC	ATGGAGGTCACAGCCACAGAC	-			P-0015178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	232	529	0	ENST00000261769.5:c.844_864del	p.Met282_Asp288del	p.M282_D288del	ENST00000261769	NM_004360.3	282	ATGGAGGTCACAGCCACAGAC/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	56	585	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0015180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	80	624	1	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133256105	133256105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	70	495	0	ENST00000320574.5:c.556G>A	p.Ala186Thr	p.A186T	ENST00000320574	NM_006231.2	186	Gcg/Acg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949986	44949986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	46	261	0	ENST00000377967.4:c.3755C>A	p.Ala1252Glu	p.A1252E	ENST00000377967	NM_021140.2	1252	gCa/gAa																																																																															
EP300	2033	MSKCC	GRCh37	22	41523644	41523645	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	31	744	0	ENST00000263253.7:c.1063dup	p.Glu355GlyfsTer56	p.E355Gfs*56	ENST00000263253	NM_001429.3	354	cgg/cGgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	351	1074	1	ENST00000269305.4:c.376-1G>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
FGFR1	2260	MSKCC	GRCh37	8	38318617	38318617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	184	649	5	ENST00000425967.3:c.8C>T	p.Ala3Val	p.A3V	ENST00000425967	NM_001174067.1	3	gCa/gTa																																																																															
IGF1	3479	MSKCC	GRCh37	12	102874100	102874100	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	54	430	0	ENST00000307046.8:c.60G>C	p.Leu20Phe	p.L20F	ENST00000307046	NM_001111285.1	20	ttG/ttC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0015189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	370	464	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729734	162729734	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	376	486	0	ENST00000367921.3:c.820G>T	p.Glu274Ter	p.E274*	ENST00000367921	NM_006182.2	274	Gaa/Taa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95582897	95582897	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	313	306	0	ENST00000343455.3:c.1645T>C	p.Ser549Pro	p.S549P	ENST00000343455	NM_177438.2	549	Tct/Cct																																																																															
RARA	5914	MSKCC	GRCh37	17	38510706	38510706	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	244	404	0	ENST00000254066.5:c.960G>T	p.Glu320Asp	p.E320D	ENST00000254066	NM_000964.3	320	gaG/gaT																																																																															
IRF4	3662	MSKCC	GRCh37	6	401469	401469	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	112	241	0	ENST00000380956.4:c.791A>T	p.Lys264Met	p.K264M	ENST00000380956	NM_001195286.1	264	aAg/aTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959168	2959168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1296	347	530	0	ENST00000396946.4:c.2348A>G	p.Asn783Ser	p.N783S	ENST00000396946	NM_032415.4	783	aAc/aGc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520009		P-0015190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	113	525	2	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0015190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	182	417	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
JUN	3725	MSKCC	GRCh37	1	59248675	59248676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	600	821	0	ENST00000371222.2:c.67dup	p.Ser23LysfsTer8	p.S23Kfs*8	ENST00000371222	NM_002228.3	23	agc/aAgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0015190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	349	483	0	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
TP53	7157	MSKCC	GRCh37	17	7576914	7576914	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	127	616	0	ENST00000269305.4:c.932del	p.Asn311ThrfsTer34	p.N311Tfs*34	ENST00000269305	NM_001126112.2	311	aAc/ac																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1321292	1321292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	35	510	0	ENST00000381566.1:c.463C>T	p.Pro155Ser	p.P155S	ENST00000381566		155	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	700	547	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	14	314	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
AR	367	MSKCC	GRCh37	X	66765239	66765239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	42	333	0	ENST00000374690.3:c.251C>A	p.Pro84His	p.P84H	ENST00000374690	NM_000044.3	84	cCc/cAc																																																																															
AR	367	MSKCC	GRCh37	X	66765666	66765667	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1368	772	913	0	ENST00000374690.3:c.683dup	p.Thr229HisfsTer6	p.T229Hfs*6	ENST00000374690	NM_000044.3	226	-/G																																																																															
PGR	5241	MSKCC	GRCh37	11	100909922	100909922	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	52	490	0	ENST00000325455.5:c.2727G>C	p.Met909Ile	p.M909I	ENST00000325455	NM_001202474.3	909	atG/atC																																																																															
YAP1	10413	MSKCC	GRCh37	11	102056857	102056857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	217	476	0	ENST00000282441.5:c.797G>A	p.Arg266His	p.R266H	ENST00000282441	NM_001130145.2	266	cGt/cAt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489093	56489093	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	272	487	0	ENST00000267101.3:c.1912G>T	p.Gly638Cys	p.G638C	ENST00000267101	NM_001982.3	638	Ggc/Tgc																																																																															
RB1	5925	MSKCC	GRCh37	13	49039385	49039385	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	535	723	0	ENST00000267163.4:c.2370C>A	p.Tyr790Ter	p.Y790*	ENST00000267163	NM_000321.2	790	taC/taA																																																																															
TCF3	6929	MSKCC	GRCh37	19	1627369	1627369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1296	262	593	0	ENST00000344749.5:c.355G>T	p.Gly119Cys	p.G119C	ENST00000344749	NM_001136139.2	119	Ggc/Tgc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876319	35876319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	418	438	0	ENST00000303115.3:c.1111G>T	p.Ala371Ser	p.A371S	ENST00000303115	NM_002185.3	371	Gct/Tct																																																																															
STK19	8859	MSKCC	GRCh37	6	31948275	31948275	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	689	647	0	ENST00000375331.2:c.851G>T	p.Trp284Leu	p.W284L	ENST00000375331	NM_004197.1	284	tGg/tTg																																																																															
NBN	4683	MSKCC	GRCh37	8	90993637	90993637	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	93	438	0	ENST00000265433.3:c.286G>C	p.Gly96Arg	p.G96R	ENST00000265433	NM_002485.4	96	Ggt/Cgt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402421	139402421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	846	748	1	ENST00000277541.6:c.3496G>A	p.Gly1166Ser	p.G1166S	ENST00000277541	NM_017617.3	1166	Ggc/Agc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245315	53245315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	612	687	0	ENST00000375401.3:c.722C>T	p.Ala241Val	p.A241V	ENST00000375401	NM_004187.3	241	gCa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	84	403	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101195	27101195	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	100	644	0	ENST00000324856.7:c.4477C>T	p.Gln1493Ter	p.Q1493*	ENST00000324856	NM_006015.4	1493	Cag/Tag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44896898	44896898	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0015193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	133	586	0	ENST00000377967.4:c.620-2A>G		p.X207_splice	ENST00000377967	NM_021140.2	207																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0015195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	147	752	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663157	227663157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	111	531	1	ENST00000305123.5:c.298G>A	p.Glu100Lys	p.E100K	ENST00000305123	NM_005544.2	100	Gag/Aag																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73774795	73774795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1526	335	745	0	ENST00000254810.4:c.292G>A	p.Glu98Lys	p.E98K	ENST00000254810	NM_005324.3	98	Gaa/Aaa																																																																															
MLL	4297	MSKCC	GRCh37	11	118373325	118373325	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	43	454	0	ENST00000534358.1:c.6718G>C	p.Glu2240Gln	p.E2240Q	ENST00000534358	NM_005933.3	2240	Gaa/Caa																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041045	29041045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	22	291	0	ENST00000282397.4:c.383T>C	p.Ile128Thr	p.I128T	ENST00000282397	NM_002019.4	128	aTt/aCt																																																																															
CALR	811	MSKCC	GRCh37	19	13054719	13054719	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	22	271	0	ENST00000316448.5:c.1246G>T	p.Glu416Ter	p.E416*	ENST00000316448	NM_004343.3	416	Gag/Tag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678763	52678763	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	179	453	0	ENST00000394830.3:c.856G>T	p.Glu286Ter	p.E286*	ENST00000394830	NM_018313.4	286	Gaa/Taa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056213	26056213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	145	344	0	ENST00000343677.2:c.444G>T	p.Lys148Asn	p.K148N	ENST00000343677	NM_005319.3	148	aaG/aaT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187990	32187990	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1395	96	665	0	ENST00000375023.3:c.1231C>G	p.Pro411Ala	p.P411A	ENST00000375023	NM_004557.3	411	Ccc/Gcc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243482	41243482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	70	536	0	ENST00000357654.3:c.4066C>G	p.Gln1356Glu	p.Q1356E	ENST00000357654	NM_007294.3	1356	Caa/Gaa																																																																															
POLE	5426	MSKCC	GRCh37	12	133208987	133208987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	110	600	1	ENST00000320574.5:c.6244G>A	p.Glu2082Lys	p.E2082K	ENST00000320574	NM_006231.2	2082	Gag/Aag																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091782	29091782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	119	595	2	ENST00000328354.6:c.1175C>T	p.Ala392Val	p.A392V	ENST00000328354	NM_007194.3	392	gCg/gTg																																																																															
ATR	545	MSKCC	GRCh37	3	142171975	142171975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	35	538	0	ENST00000350721.4:c.7756G>A	p.Glu2586Lys	p.E2586K	ENST00000350721	NM_001184.3	2586	Gaa/Aaa																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5549445	5549445	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141466336		P-0015197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	128	670	0	ENST00000397747.3:c.472G>A	p.Val158Ile	p.V158I	ENST00000397747	NM_025239.3	158	Gtc/Atc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1169	64	855	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519972		P-0015206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	58	637	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533099	63533099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	66	642	1	ENST00000307078.5:c.1795G>T	p.Ala599Ser	p.A599S	ENST00000307078	NM_004655.3	599	Gcc/Tcc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87325622	87325622	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	50	561	0	ENST00000277120.3:c.499T>C	p.Ser167Pro	p.S167P	ENST00000277120		167	Tcc/Ccc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929401	44929407	+	frameshift_variant	Frame_Shift_Del	DEL	AGCAGAC	AGCAGAC	-			P-0015206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	64	456	0	ENST00000377967.4:c.2502_2508delGCAGACA	p.Gln835ProfsTer30	p.Q835Pfs*30	ENST00000377967	NM_021140.2	834	gAGCAGACa/ga																																																																															
KIT	3815	MSKCC	GRCh37	4	55569989	55569989	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	247	440	0	ENST00000288135.5:c.856G>C	p.Gly286Arg	p.G286R	ENST00000288135	NM_000222.2	286	Gga/Cga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624288	89624288	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	GGATG			P-0015207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	150	476	0	ENST00000371953.3:c.62delinsGGATG	p.Phe21TrpfsTer24	p.F21Wfs*24	ENST00000371953	NM_000314.4	21	tTc/tGGATGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0015208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	339	691	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	157	542	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0015208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	144	412	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81991588	81991589	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	98	342	0	ENST00000359376.3:c.3785dup	p.Phe1263ValfsTer11	p.F1263Vfs*11	ENST00000359376	NM_002661.3	1261	-/A																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47596676	47596676	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	75	292	0	ENST00000263735.4:c.32T>G	p.Leu11Arg	p.L11R	ENST00000263735	NM_002354.2	11	cTt/cGt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043464	180043464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	212	634	0	ENST00000261937.6:c.3122G>A	p.Arg1041Gln	p.R1041Q	ENST00000261937	NM_182925.4	1041	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112170714	112170715	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	T			P-0015208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	156	502	0	ENST00000257430.4:c.1810_1811delinsT	p.Ala604LeufsTer6	p.A604Lfs*6	ENST00000257430	NM_000038.5	604	GCt/Tt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	146	404	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125525140	125525140	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	200	538	0	ENST00000428830.2:c.1356G>C	p.Lys452Asn	p.K452N	ENST00000428830	NM_001114121.2	452	aaG/aaC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541116	187541121	+	inframe_deletion	In_Frame_Del	DEL	GCTGTT	GCTGTT	-			P-0015209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	114	358	0	ENST00000441802.2:c.6619_6624delAACAGC	p.Asn2207_Ser2208del	p.N2207_S2208del	ENST00000441802	NM_005245.3	2207	AACAGC/-																																																																															
APC	324	MSKCC	GRCh37	5	112111408	112111411	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0015211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	142	411	0	ENST00000257430.4:c.509_512del	p.Asp170ValfsTer4	p.D170Vfs*4	ENST00000257430	NM_000038.5	169	ATAGat/at																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0015211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	234	673	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	172	461	4	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030692	48030692	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	176	406	1	ENST00000234420.5:c.3312delT	p.Phe1104LeufsTer11	p.F1104Lfs*11	ENST00000234420	NM_000179.2	1102	acT/ac																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72163744	72163744	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1248852117		P-0015211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	282	770	0	ENST00000357731.5:c.614C>T	p.Ala205Val	p.A205V	ENST00000357731	NM_173808.2	205	gCg/gTg																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0015211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	379	983	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2489845	2489845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	283	740	1	ENST00000355716.4:c.242G>A	p.Gly81Asp	p.G81D	ENST00000355716	NM_003820.2	81	gGc/gAc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743782	46743782	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201788900		P-0015211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	270	683	1	ENST00000371975.4:c.2072G>A	p.Arg691Gln	p.R691Q	ENST00000371975	NM_003579.3	691	cGg/cAg																																																																															
IDH2	3418	MSKCC	GRCh37	15	90630476	90630476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	285	691	1	ENST00000330062.3:c.835G>A	p.Asp279Asn	p.D279N	ENST00000330062	NM_002168.2	279	Gac/Aac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3823760	3823760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	157	359	1	ENST00000262367.5:c.2455G>A	p.Val819Met	p.V819M	ENST00000262367	NM_004380.2	819	Gtg/Atg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374912	45374912	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	283	621	0	ENST00000262160.6:c.931T>C	p.Phe311Leu	p.F311L	ENST00000262160	NM_005901.5	311	Ttc/Ctc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403245	213403245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	211	604	0	ENST00000342788.4:c.10G>A	p.Ala4Thr	p.A4T	ENST00000342788	NM_005235.2	4	Gcg/Acg																																																																															
MST1	4485	MSKCC	GRCh37	3	49725324	49725324	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748664213		P-0015211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	278	577	0	ENST00000449682.2:c.101G>A	p.Arg34His	p.R34H	ENST00000449682	NM_020998.3	34	cGc/cAc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442507	52442507	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	295	643	0	ENST00000460680.1:c.238A>G	p.Met80Val	p.M80V	ENST00000460680	NM_004656.3	80	Atg/Gtg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89156926	89156928	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0015211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	100	579	0	ENST00000336596.2:c.30_32del	p.Leu11del	p.L11del	ENST00000336596	NM_005233.5	10	CTT/-																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953041	2953041	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149857605		P-0015211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	262	864	0	ENST00000396946.4:c.2899C>T	p.Arg967Cys	p.R967C	ENST00000396946	NM_032415.4	967	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0015212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	69	551	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	61	587	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221131	5221131	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201447856		P-0015212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	33	617	1	ENST00000357368.4:c.3335C>T	p.Thr1112Met	p.T1112M	ENST00000357368	NM_002850.3	1112	aCg/aTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691945	30691945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	57	300	0	ENST00000359013.4:c.522C>A	p.Phe174Leu	p.F174L	ENST00000359013	NM_001024847.2	174	ttC/ttA																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971042	21971055	+	frameshift_variant	Frame_Shift_Del	DEL	CGTCCAGCCGCGCC	CGTCCAGCCGCGCC	-			P-0015212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	86	311	0	ENST00000304494.5:c.303_316delGGCGCGGCTGGACG	p.Leu104CysfsTer11	p.L104Cfs*11	ENST00000304494	NM_000077.4	101	ggGGCGCGGCTGGACGtg/ggtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0015213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	57	454	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
NF1	4763	MSKCC	GRCh37	17	29559101	29559101	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	24	92	1	ENST00000358273.4:c.3208C>T	p.Gln1070Ter	p.Q1070*	ENST00000358273	NM_001042492.2	1070	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1220698	1220698	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	118	755	0	ENST00000326873.7:c.716G>T	p.Trp239Leu	p.W239L	ENST00000326873	NM_000455.4	239	tGg/tTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610500	10610501	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0015213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	54	579	0	ENST00000171111.5:c.209_210delinsCT	p.Leu70Pro	p.L70P	ENST00000171111	NM_203500.1	70	cTG/cCT																																																																															
CUL3	8452	MSKCC	GRCh37	2	225422501	225422501	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0015213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	90	394	0	ENST00000264414.4:c.139A>T	p.Lys47Ter	p.K47*	ENST00000264414	NM_003590.4	47	Aag/Tag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274910	41274910	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	57	348	0	ENST00000349496.5:c.1160A>G	p.Asn387Ser	p.N387S	ENST00000349496	NM_001904.3	387	aAt/aGt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437351	52437587	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGACACTTTGTGGTCACTTGGCCACTTCCCTCCTCCCTCCTGGGTGCACCAAGTGGCCAGTGAGCCAGTCCAAGGCCCACCTGTCAGCGCCAGGGGACTCAGCACCCCATCCTCAGCCAGGTGCAGCAGGCCTGTGCTGATGACAGGACCCAGATCACGGACAGCACGGTTGTAGCGTATGCAGTCAACACGCAGCAGGCTGTCATCCTCTCCAAAAAGCACCTTGGAGATGTGGG	AGGACACTTTGTGGTCACTTGGCCACTTCCCTCCTCCCTCCTGGGTGCACCAAGTGGCCAGTGAGCCAGTCCAAGGCCCACCTGTCAGCGCCAGGGGACTCAGCACCCCATCCTCAGCCAGGTGCAGCAGGCCTGTGCTGATGACAGGACCCAGATCACGGACAGCACGGTTGTAGCGTATGCAGTCAACACGCAGCAGGCTGTCATCCTCTCCAAAAAGCACCTTGGAGATGTGGG	-			P-0015213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	60	298	0	ENST00000460680.1:c.1574_1730-37del		p.X525_splice	ENST00000460680	NM_004656.3	525																																																																																
ATR	545	MSKCC	GRCh37	3	142242872	142242872	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0015213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	64	500	2	ENST00000350721.4:c.4115C>G	p.Ser1372Ter	p.S1372*	ENST00000350721	NM_001184.3	1372	tCa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	276	460	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100956	41100956	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	101	436	2	ENST00000373198.4:c.1400C>A	p.Pro467His	p.P467H	ENST00000373198	NM_133170.3	467	cCc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221822	55221822	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	45	646	2	ENST00000275493.2:c.866C>A	p.Ala289Asp	p.A289D	ENST00000275493	NM_005228.3	289	gCc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	356	709	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541523	187541523	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	248	354	0	ENST00000441802.2:c.6217G>T	p.Asp2073Tyr	p.D2073Y	ENST00000441802	NM_005245.3	2073	Gac/Tac																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31383489	31383489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	61	499	0	ENST00000328111.2:c.1286G>A	p.Ser429Asn	p.S429N	ENST00000328111	NM_006892.3	429	aGc/aAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16237660	16237660	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	50	455	0	ENST00000375759.3:c.1107G>T	p.Gln369His	p.Q369H	ENST00000375759	NM_015001.2	369	caG/caT																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400916	72400916	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	46	311	0	ENST00000357731.5:c.255del	p.Trp85CysfsTer12	p.W85Cfs*12	ENST00000357731	NM_173808.2	85	tgG/tg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64135709	64135709	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	218	542	1	ENST00000334205.4:c.1177G>T	p.Val393Leu	p.V393L	ENST00000334205	NM_003942.2	393	Gtg/Ttg																																																																															
CCND2	894	MSKCC	GRCh37	12	4388073	4388073	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	23	241	1	ENST00000261254.3:c.559C>A	p.Leu187Met	p.L187M	ENST00000261254	NM_001759.3	187	Ctg/Atg																																																																															
MLL2	8085	MSKCC	GRCh37	12	49434700	49434700	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	73	745	0	ENST00000301067.7:c.6853C>G	p.Leu2285Val	p.L2285V	ENST00000301067	NM_003482.3	2285	Cta/Gta																																																																															
BLM	641	MSKCC	GRCh37	15	91354453	91354453	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	77	299	1	ENST00000355112.3:c.3893G>T	p.Gly1298Val	p.G1298V	ENST00000355112	NM_000057.2	1298	gGg/gTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991473	72991473	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	449	619	1	ENST00000268489.5:c.2572G>T	p.Glu858Ter	p.E858*	ENST00000268489	NM_006885.3	858	Gag/Tag																																																																															
EZH1	2145	MSKCC	GRCh37	17	40876390	40876390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	70	604	1	ENST00000428826.2:c.299G>A	p.Arg100Lys	p.R100K	ENST00000428826		100	aGg/aAg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533868	63533868	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	205	446	0	ENST00000307078.5:c.1286G>T	p.Gly429Val	p.G429V	ENST00000307078	NM_004655.3	429	gGc/gTc																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17386615	17386615	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	342	785	2	ENST00000359435.4:c.550G>T	p.Glu184Ter	p.E184*	ENST00000359435	NM_001033549.1	184	Gaa/Taa																																																																															
AKT2	208	MSKCC	GRCh37	19	40748590	40748590	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	149	486	0	ENST00000392038.2:c.292G>T	p.Glu98Ter	p.E98*	ENST00000392038	NM_001626.4	98	Gag/Tag																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31394118	31394118	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	281	360	0	ENST00000328111.2:c.2405G>T	p.Cys802Phe	p.C802F	ENST00000328111	NM_006892.3	802	tGc/tTc																																																																															
ERG	2078	MSKCC	GRCh37	21	39763592	39763592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	40	336	0	ENST00000288319.7:c.860G>T	p.Arg287Leu	p.R287L	ENST00000288319	NM_182918.3	287	cGt/cTt																																																																															
EP300	2033	MSKCC	GRCh37	22	41523644	41523645	+	missense_variant	Missense_Mutation	DNP	CG	CG	TT			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	266	675	0	ENST00000263253.7:c.1060_1061delinsTT	p.Arg354Leu	p.R354L	ENST00000263253	NM_001429.3	354	CGg/TTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41562613	41562613	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	54	325	0	ENST00000263253.7:c.3817G>T	p.Asp1273Tyr	p.D1273Y	ENST00000263253	NM_001429.3	1273	Gat/Tat																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928972	49928972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	70	623	0	ENST00000296474.3:c.3394G>T	p.Gly1132Trp	p.G1132W	ENST00000296474	NM_002447.2	1132	Ggg/Tgg																																																																															
MITF	4286	MSKCC	GRCh37	3	69987111	69987111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	50	426	0	ENST00000352241.4:c.493G>T	p.Gly165Cys	p.G165C	ENST00000352241	NM_198159.2	165	Ggc/Tgc																																																																															
TP63	8626	MSKCC	GRCh37	3	189584501	189584501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	156	337	0	ENST00000264731.3:c.797G>T	p.Arg266Leu	p.R266L	ENST00000264731	NM_003722.4	266	cGa/cTa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188946	32188946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	434	615	0	ENST00000375023.3:c.608G>T	p.Gly203Val	p.G203V	ENST00000375023	NM_004557.3	203	gGa/gTa																																																																															
SMO	6608	MSKCC	GRCh37	7	128829192	128829192	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	133	360	0	ENST00000249373.3:c.200C>A	p.Ala67Asp	p.A67D	ENST00000249373	NM_005631.4	67	gCt/gAt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227699	53227699	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	179	530	0	ENST00000375401.3:c.2489T>C	p.Leu830Pro	p.L830P	ENST00000375401	NM_004187.3	830	cTg/cCg																																																																															
AR	367	MSKCC	GRCh37	X	66765238	66765238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	21	320	0	ENST00000374690.3:c.250C>A	p.Pro84Thr	p.P84T	ENST00000374690	NM_000044.3	84	Ccc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	250	446	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0015219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	291	509	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																															
MLL4	9757	MSKCC	GRCh37	19	36212540	36212540	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144673174		P-0015219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1283	93	799	2	ENST00000222270.7:c.2291C>T	p.Pro764Leu	p.P764L	ENST00000222270	NM_014727.1	764	cCg/cTg																																																																															
MLL4	9757	MSKCC	GRCh37	19	36212546	36212546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1304	88	830	0	ENST00000222270.7:c.2297C>T	p.Pro766Leu	p.P766L	ENST00000222270	NM_014727.1	766	cCa/cTa																																																																															
MLL4	9757	MSKCC	GRCh37	19	36214897	36214897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1261	76	817	0	ENST00000222270.7:c.3323C>T	p.Pro1108Leu	p.P1108L	ENST00000222270	NM_014727.1	1108	cCc/cTc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929300	44929301	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0015219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	391	831	0	ENST00000377967.4:c.2400_2401del	p.Asn801Ter	p.N801*	ENST00000377967	NM_021140.2	800	gtCAat/gtat																																																																															
BTK	695	MSKCC	GRCh37	X	100611866	100611867	+	stop_gained	Nonsense_Mutation	DNP	CA	CA	AT			P-0015219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	236	729	3	ENST00000308731.7:c.1254_1255delinsAT	p.Tyr418_Gly419delinsTer	p.Y418_G419delins*	ENST00000308731	NM_000061.2	418	taTGgg/taATgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0015221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	473	765	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128201212	128201212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	105	563	0	ENST00000265960.3:c.1523G>A	p.Arg508His	p.R508H	ENST00000265960	NM_001006617.1	508	cGt/cAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1294444	1294444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1736	102	743	1	ENST00000310581.5:c.557C>T	p.Pro186Leu	p.P186L	ENST00000310581	NM_198253.2	186	cCc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	200	482	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	207	644	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0015222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	275	453	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602923	10602923	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	363	847	0	ENST00000171111.5:c.655G>T	p.Glu219Ter	p.E219*	ENST00000171111	NM_203500.1	219	Gag/Tag																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400815	72400815	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	30	320	0	ENST00000357731.5:c.356C>G	p.Ser119Cys	p.S119C	ENST00000357731	NM_173808.2	119	tCt/tGt																																																																															
AXL	558	MSKCC	GRCh37	19	41763410	41763410	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	230	522	0	ENST00000301178.4:c.2209G>C	p.Val737Leu	p.V737L	ENST00000301178	NM_021913.4	737	Gtg/Ctg																																																																															
KDR	3791	MSKCC	GRCh37	4	55980434	55980434	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0015222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	56	236	0	ENST00000263923.4:c.659-2A>G		p.X220_splice	ENST00000263923	NM_002253.2	220																																																																																
EZH2	2146	MSKCC	GRCh37	7	148515146	148515146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	119	339	0	ENST00000320356.2:c.1063C>T	p.Pro355Ser	p.P355S	ENST00000320356	NM_004456.4	355	Cca/Tca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500865	8500865	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	149	439	0	ENST00000356435.5:c.2017C>G	p.Leu673Val	p.L673V	ENST00000356435		673	Ctt/Gtt																																																																															
NF1	4763	MSKCC	GRCh37	17	29559090	29559090	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0015226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	41	40	0	ENST00000358273.4:c.3198-1G>A		p.X1066_splice	ENST00000358273	NM_001042492.2	1066																																																																																
DICER1	23405	MSKCC	GRCh37	14	95560382	95560382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	56	394	0	ENST00000343455.3:c.5207G>T	p.Arg1736Leu	p.R1736L	ENST00000343455	NM_177438.2	1736	cGg/cTg																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944864	31944864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	124	519	0	ENST00000340398.3:c.237C>A	p.Asn79Lys	p.N79K	ENST00000340398	NM_001013699.2	79	aaC/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577567	7577569	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0015226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	132	473	0	ENST00000269305.4:c.712_714del	p.Cys238del	p.C238del	ENST00000269305	NM_001126112.2	238	TGT/-																																																																															
NF1	4763	MSKCC	GRCh37	17	29576091	29576091	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0015226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	152	538	0	ENST00000358273.4:c.4064C>G	p.Ser1355Ter	p.S1355*	ENST00000358273	NM_001042492.2	1355	tCa/tGa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467898	50467898	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	47	426	0	ENST00000331340.3:c.1133A>G	p.Lys378Arg	p.K378R	ENST00000331340	NM_006060.4	378	aAg/aGg																																																																															
NBN	4683	MSKCC	GRCh37	8	90965913	90965913	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	58	153	0	ENST00000265433.3:c.1404G>T	p.Arg468Ser	p.R468S	ENST00000265433	NM_002485.4	468	agG/agT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	80	713	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ATM	472	MSKCC	GRCh37	11	108235935	108235935	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs770641163		P-0015236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	54	504	1	ENST00000278616.4:c.8977C>T	p.Arg2993Ter	p.R2993*	ENST00000278616	NM_000051.3	2993	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106279	27106280	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	105	914	1	ENST00000324856.7:c.5891dup	p.Thr1965AspfsTer34	p.T1965Dfs*34	ENST00000324856	NM_006015.4	1964	gag/gAag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120218	70120218	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	101	941	1	ENST00000245479.2:c.1220del	p.Tyr407SerfsTer63	p.Y407Sfs*63	ENST00000245479	NM_000346.3	407	tAc/tc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	128	813	3	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	179	668	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	123	689	3	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	544	859	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	401	1023	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	236	617	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	262	599	2	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	281	842	5	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931452	131931452	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772667708		P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	383	626	22	ENST00000265335.6:c.2165del	p.Lys722ArgfsTer14	p.K722Rfs*14	ENST00000265335		719	ctA/ct																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	365	695	21	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	260	588	11	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	277	572	10	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272447	15272447	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201105335		P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	248	1249	4	ENST00000263388.2:c.5992C>T	p.Arg1998Cys	p.R1998C	ENST00000263388	NM_000435.2	1998	Cgt/Tgt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	174	934	9	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11264661	11264661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	146	797	2	ENST00000361445.4:c.3901C>T	p.Arg1301Cys	p.R1301C	ENST00000361445	NM_004958.3	1301	Cgc/Tgc																																																																															
ABL1	25	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	330	1125	5	ENST00000318560.5:c.2352delC	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																																																															
POLE	5426	MSKCC	GRCh37	12	133245024	133245024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	176	981	6	ENST00000320574.5:c.2091del	p.Leu698CysfsTer94	p.L698Cfs*94	ENST00000320574	NM_006231.2	697	ccC/cc																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345768	152345769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	156	465	0	ENST00000359321.1:c.801dup	p.His268ThrfsTer11	p.H268Tfs*11	ENST00000359321	NM_005431.1	267	-/A																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202351	138202351	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	134	818	0	ENST00000237289.4:c.2274del	p.Lys759SerfsTer57	p.K759Sfs*57	ENST00000237289	NM_001270507.1	756	gaC/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	340	856	1	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	312	949	8	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001524	150001524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	191	821	2	ENST00000253339.5:c.2080C>T	p.Arg694Cys	p.R694C	ENST00000253339		694	Cgt/Tgt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	298	1055	9	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44514810	44514810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	141	716	2	ENST00000291552.4:c.437C>T	p.Pro146Leu	p.P146L	ENST00000291552	NM_006758.2	146	cCc/cTc																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598900	28598900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	351	982	0	ENST00000253063.3:c.460G>A	p.Glu154Lys	p.E154K	ENST00000253063	NM_031459.4	154	Gag/Aag																																																																															
JUN	3725	MSKCC	GRCh37	1	59248438	59248438	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	245	618	0	ENST00000371222.2:c.305A>C	p.Asn102Thr	p.N102T	ENST00000371222	NM_002228.3	102	aAc/aCc																																																																															
PARP1	142	MSKCC	GRCh37	1	226567685	226567685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	216	675	1	ENST00000366794.5:c.1481C>T	p.Ala494Val	p.A494V	ENST00000366794	NM_001618.3	494	gCc/gTc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63810688	63810688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	192	538	0	ENST00000279873.7:c.775C>A	p.Pro259Thr	p.P259T	ENST00000279873	NM_032199.2	259	Cca/Aca																																																																															
TET1	80312	MSKCC	GRCh37	10	70446306	70446306	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	145	819	0	ENST00000373644.4:c.5246A>G	p.Gln1749Arg	p.Q1749R	ENST00000373644	NM_030625.2	1749	cAg/cGg																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588877	69588877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	261	792	3	ENST00000168712.1:c.359C>T	p.Pro120Leu	p.P120L	ENST00000168712	NM_002007.2	120	cCc/cTc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589732	69589732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	95	239	0	ENST00000168712.1:c.121G>A	p.Ala41Thr	p.A41T	ENST00000168712	NM_002007.2	41	Gcc/Acc																																																																															
PGR	5241	MSKCC	GRCh37	11	100999142	100999142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	327	883	2	ENST00000325455.5:c.660G>T	p.Glu220Asp	p.E220D	ENST00000325455	NM_001202474.3	220	gaG/gaT																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981871	101981871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	199	1102	0	ENST00000282441.5:c.292C>T	p.Pro98Ser	p.P98S	ENST00000282441	NM_001130145.2	98	Ccg/Tcg																																																																															
MLL2	8085	MSKCC	GRCh37	12	49426576	49426578	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	138	813	0	ENST00000301067.7:c.11910_11912delGCA	p.Gln3974del	p.Q3974del	ENST00000301067	NM_003482.3	3970	caGCAa/caa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562043	21562043	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	225	1297	6	ENST00000382592.4:c.1876C>T	p.Gln626Ter	p.Q626*	ENST00000382592	NM_014572.2	626	Cag/Tag																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103528078	103528078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	247	621	0	ENST00000355739.4:c.3386C>T	p.Ser1129Leu	p.S1129L	ENST00000355739	NM_000123.3	1129	tCg/tTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95599668	95599668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	162	569	3	ENST00000343455.3:c.128C>T	p.Thr43Met	p.T43M	ENST00000343455	NM_177438.2	43	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578193	7578193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	348	1113	0	ENST00000269305.4:c.656C>A	p.Pro219His	p.P219H	ENST00000269305	NM_001126112.2	219	cCc/cAc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7980013	7980013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	290	951	2	ENST00000319144.4:c.1324C>T	p.Arg442Trp	p.R442W	ENST00000319144	NM_001139.2	442	Cgg/Tgg																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804391	46804391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	176	630	0	ENST00000290295.7:c.616C>T	p.His206Tyr	p.H206Y	ENST00000290295	NM_006361.5	206	Cac/Tac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435355	56435357	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	145	919	0	ENST00000407977.2:c.1780_1782del	p.Pro594del	p.P594del	ENST00000407977		594	CCT/-																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119096	70119096	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	122	487	0	ENST00000245479.2:c.672del	p.Gly225AlafsTer28	p.G225Afs*28	ENST00000245479	NM_000346.3	223	tCc/tc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39600670	39600670	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	44	382	0	ENST00000262039.4:c.1484+1G>A		p.X495_splice	ENST00000262039	NM_002647.2	495																																																																																
DOT1L	84444	MSKCC	GRCh37	19	2226454	2226454	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	191	1054	0	ENST00000398665.3:c.3934C>A	p.Pro1312Thr	p.P1312T	ENST00000398665	NM_032482.2	1312	Cct/Act																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141412	11141412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	147	770	3	ENST00000344626.4:c.3389C>T	p.Thr1130Met	p.T1130M	ENST00000344626	NM_003072.3	1130	aCg/aTg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967089	18967089	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1334288478		P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	194	936	1	ENST00000262803.5:c.1804G>A	p.Ala602Thr	p.A602T	ENST00000262803	NM_002911.3	602	Gca/Aca																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264348	46264348	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	105	671	0	ENST00000371998.3:c.1400delC	p.Pro467HisfsTer15	p.P467Hfs*15	ENST00000371998		465	agC/ag																																																																															
EP300	2033	MSKCC	GRCh37	22	41553172	41553172	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	68	548	0	ENST00000263253.7:c.3262-1G>A		p.X1088_splice	ENST00000263253	NM_001429.3	1088																																																																																
MST1R	4486	MSKCC	GRCh37	3	49933695	49933695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	377	1078	0	ENST00000296474.3:c.2582C>T	p.Pro861Leu	p.P861L	ENST00000296474	NM_002447.2	861	cCc/cTc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610608	52610608	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	122	828	0	ENST00000394830.3:c.3565G>T	p.Glu1189Ter	p.E1189*	ENST00000394830	NM_018313.4	1189	Gaa/Taa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138384031	138384031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	115	729	0	ENST00000289153.2:c.2519G>A	p.Gly840Asp	p.G840D	ENST00000289153	NM_006219.2	840	gGc/gAc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38978703	38978703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	170	687	0	ENST00000357387.3:c.803C>T	p.Thr268Ile	p.T268I	ENST00000357387	NM_152756.3	268	aCa/aTa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636997	176636997	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	141	936	2	ENST00000439151.2:c.1597C>A	p.Leu533Ile	p.L533I	ENST00000439151	NM_022455.4	533	Ctt/Att																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680418	30680418	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	239	747	0	ENST00000376406.3:c.1301A>G	p.Asp434Gly	p.D434G	ENST00000376406	NM_014641.2	434	gAc/gGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151876974	151876974	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750213944		P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	186	687	2	ENST00000262189.6:c.7387C>T	p.Arg2463Cys	p.R2463C	ENST00000262189	NM_170606.2	2463	Cgt/Tgt																																																																															
MLL3	58508	MSKCC	GRCh37	7	151891145	151891145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	222	803	1	ENST00000262189.6:c.4609C>T	p.Pro1537Ser	p.P1537S	ENST00000262189	NM_170606.2	1537	Cca/Tca																																																																															
MLL3	58508	MSKCC	GRCh37	7	151900029	151900029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	130	637	0	ENST00000262189.6:c.4082C>T	p.Ala1361Val	p.A1361V	ENST00000262189	NM_170606.2	1361	gCc/gTc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370754	55370754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	127	751	0	ENST00000297316.4:c.56C>T	p.Ala19Val	p.A19V	ENST00000297316	NM_022454.3	19	gCg/gTg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372202	55372202	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	146	652	1	ENST00000297316.4:c.892G>T	p.Gly298Cys	p.G298C	ENST00000297316	NM_022454.3	298	Ggc/Tgc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87636345	87636345	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	215	894	0	ENST00000277120.3:c.2510T>C	p.Leu837Pro	p.L837P	ENST00000277120		837	cTa/cCa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	252	489	0	ENST00000397062.3:c.92G>A	p.Gly31Glu	p.G31E	ENST00000397062	NM_006164.4	31	gGa/gAa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692893	89692893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	348	605	0	ENST00000371953.3:c.377C>A	p.Ala126Asp	p.A126D	ENST00000371953	NM_000314.4	126	gCt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	891	961	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																																																															
TOP1	7150	MSKCC	GRCh37	20	39741455	39741455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	217	704	1	ENST00000361337.2:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000361337	NM_003286.2	448	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	447	643	1	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
NUF2	83540	MSKCC	GRCh37	1	163313578	163313578	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	111	517	0	ENST00000271452.3:c.725C>G	p.Thr242Arg	p.T242R	ENST00000271452	NM_145697.2	242	aCa/aGa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233138	46233138	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	138	449	0	ENST00000334344.6:c.1357G>C	p.Asp453His	p.D453H	ENST00000334344	NM_152641.2	453	Gat/Cat																																																																															
MLL2	8085	MSKCC	GRCh37	12	49416099	49416099	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	523	720	0	ENST00000301067.7:c.16376A>T	p.His5459Leu	p.H5459L	ENST00000301067	NM_003482.3	5459	cAt/cTt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748219	43748219	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	266	1037	0	ENST00000382044.4:c.2587A>T	p.Lys863Ter	p.K863*	ENST00000382044	NM_001141980.1	863	Aaa/Taa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81934308	81934308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	494	851	0	ENST00000359376.3:c.1285C>A	p.Leu429Met	p.L429M	ENST00000359376	NM_002661.3	429	Ctg/Atg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110129	8110130	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs745673717		P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	236	778	1	ENST00000585124.1:c.475dup	p.Arg159ProfsTer15	p.R159Pfs*15	ENST00000585124	NM_004217.3	159	cgc/cCgc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39623721	39623721	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	186	638	0	ENST00000262039.4:c.2128A>T	p.Ser710Cys	p.S710C	ENST00000262039	NM_002647.2	710	Agt/Tgt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2193686	2193686	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	156	863	1	ENST00000398665.3:c.494-2A>T		p.X165_splice	ENST00000398665	NM_032482.2	165																																																																																
BRD4	23476	MSKCC	GRCh37	19	15354080	15354080	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	48	748	1	ENST00000263377.2:c.2800C>T	p.Gln934Ter	p.Q934*	ENST00000263377	NM_058243.2	934	Cag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098762	47098762	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	487	910	0	ENST00000409792.3:c.6512A>T	p.Tyr2171Phe	p.Y2171F	ENST00000409792	NM_014159.6	2171	tAt/tTt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884872	134884872	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	1065	685	3	ENST00000398015.3:c.1648G>T	p.Val550Phe	p.V550F	ENST00000398015	NM_004441.4	550	Gtc/Ttc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66242724	66242724	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	171	710	0	ENST00000273854.3:c.1848C>A	p.Ser616Arg	p.S616R	ENST00000273854	NM_004439.5	616	agC/agA																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38172960	38172960	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	275	973	0	ENST00000317025.8:c.2089A>G	p.Met697Val	p.M697V	ENST00000317025	NM_023034.1	697	Atg/Gtg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918522	44918522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	325	256	0	ENST00000377967.4:c.1005G>A	p.Met335Ile	p.M335I	ENST00000377967	NM_021140.2	335	atG/atA																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714672	52714672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	119	825	4	ENST00000322088.6:c.430C>T	p.Arg144Cys	p.R144C	ENST00000322088	NM_014225.5	144	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	216	937	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0015244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	197	730	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175951	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	126	517	1	ENST00000257430.4:c.4660G>T	p.Glu1554Ter	p.E1554*	ENST00000257430	NM_000038.5	1554	Gaa/Taa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711876	89711876	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	167	700	0	ENST00000371953.3:c.494G>A	p.Gly165Glu	p.G165E	ENST00000371953	NM_000314.4	165	gGa/gAa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662086	227662086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	256	863	1	ENST00000305123.5:c.1369C>T	p.Arg457Cys	p.R457C	ENST00000305123	NM_005544.2	457	Cgc/Tgc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11186783	11186785	+	missense_variant	Missense_Mutation	ONP	GGC	GGC	TGG			P-0015244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	213	886	1	ENST00000361445.4:c.6420_6422delinsCCA	p.Pro2141Gln	p.P2141Q	ENST00000361445	NM_004958.3	2140	gtGCCa/gtCCAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0015246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	136	870	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
TET1	80312	MSKCC	GRCh37	10	70333715	70333715	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	62	625	0	ENST00000373644.4:c.1620A>C	p.Lys540Asn	p.K540N	ENST00000373644	NM_030625.2	540	aaA/aaC																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53224428	53224428	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	119	735	0	ENST00000375401.3:c.3285C>A	p.Cys1095Ter	p.C1095*	ENST00000375401	NM_004187.3	1095	tgC/tgA																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2218111	2218111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	329	1094	0	ENST00000326181.6:c.173G>A	p.Arg58Lys	p.R58K	ENST00000326181	NM_032271.2	58	aGg/aAg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81888108	81888108	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	44	783	0	ENST00000359376.3:c.253G>C	p.Ala85Pro	p.A85P	ENST00000359376	NM_002661.3	85	Gca/Cca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520008		P-0015250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	282	931	0	ENST00000269305.4:c.613T>G	p.Tyr205Asp	p.Y205D	ENST00000269305	NM_001126112.2	205	Tat/Gat																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7982806	7982806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	302	1056	4	ENST00000319144.4:c.979G>A	p.Val327Met	p.V327M	ENST00000319144	NM_001139.2	327	Gtg/Atg																																																																															
ERF	2077	MSKCC	GRCh37	19	42754086	42754086	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	165	755	0	ENST00000222329.4:c.266A>G	p.Tyr89Cys	p.Y89C	ENST00000222329	NM_006494.2	89	tAt/tGt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099439	157099439	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	94	507	3	ENST00000346085.5:c.376C>T	p.Gln126Ter	p.Q126*	ENST00000346085	NM_020732.3	126	Cag/Tag																																																																															
MLL3	58508	MSKCC	GRCh37	7	151933019	151933019	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0015250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	14	130	0	ENST00000262189.6:c.2653-1G>A		p.X885_splice	ENST00000262189	NM_170606.2	885																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	72	1151	4	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	219	473	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097621	27097622	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	59	870	0	ENST00000324856.7:c.3216dup	p.Trp1073MetfsTer32	p.W1073Mfs*32	ENST00000324856	NM_006015.4	1070	-/A																																																																															
RHOA	387	MSKCC	GRCh37	3	49405953	49405953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	206	1063	0	ENST00000418115.1:c.185G>A	p.Gly62Glu	p.G62E	ENST00000418115	NM_001664.2	62	gGg/gAg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020768	37020769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	144	984	1	ENST00000358127.4:c.76dupG	p.Val26GlyfsTer49	p.V26Gfs*49	ENST00000358127	NM_001280556.1	26	gtt/gGtt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	223	560	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139411768	139411768	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201768800		P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	47	1203	1	ENST00000277541.6:c.1511G>A	p.Arg504His	p.R504H	ENST00000277541	NM_017617.3	504	cGc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	73	830	1	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37038192	37038192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	215	492	0	ENST00000231790.2:c.199G>A	p.Gly67Arg	p.G67R	ENST00000231790	NM_000249.3	67	Ggg/Agg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354008	15354008	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	32	403	3	ENST00000263377.2:c.2872del	p.Leu958CysfsTer110	p.L958Cfs*110	ENST00000263377	NM_058243.2	958	Ctg/tg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	146	732	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	140	694	7	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914478	32914478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	49	931	0	ENST00000380152.3:c.5986G>A	p.Ala1996Thr	p.A1996T	ENST00000380152		1996	Gca/Aca																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099579	157099579	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	11	167	0	ENST00000346085.5:c.521del	p.Pro174ArgfsTer6	p.P174Rfs*6	ENST00000346085	NM_020732.3	172	gaC/ga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687306	37687306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	90	828	0	ENST00000447079.4:c.4210C>T	p.Arg1404Cys	p.R1404C	ENST00000447079	NM_015083.1	1404	Cgt/Tgt																																																																															
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	41	829	0	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																															
POLE	5426	MSKCC	GRCh37	12	133209298	133209298	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	111	916	0	ENST00000320574.5:c.6088delG	p.Ala2030ProfsTer18	p.A2030Pfs*18	ENST00000320574	NM_006231.2	2030	Gcc/cc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440882	52440882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	50	869	3	ENST00000460680.1:c.622C>T	p.Arg208Trp	p.R208W	ENST00000460680	NM_004656.3	208	Cgg/Tgg																																																																															
RB1	5925	MSKCC	GRCh37	13	48954342	48954342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	56	525	0	ENST00000267163.4:c.1463C>T	p.Ala488Val	p.A488V	ENST00000267163	NM_000321.2	488	gCg/gTg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609934	81609934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	26	419	0	ENST00000298171.2:c.1532C>T	p.Thr511Met	p.T511M	ENST00000298171	NM_000369.2	511	aCg/aTg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856389	111856389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	65	232	0	ENST00000341259.2:c.440G>A	p.Arg147His	p.R147H	ENST00000341259	NM_005475.2	147	cGc/cAc																																																																															
MSI1	4440	MSKCC	GRCh37	12	120794767	120794767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	108	1164	0	ENST00000257552.2:c.590G>A	p.Arg197Gln	p.R197Q	ENST00000257552	NM_002442.3	197	cGg/cAg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26970441	26970441	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	36	525	0	ENST00000381527.3:c.815del	p.Lys272ArgfsTer8	p.K272Rfs*8	ENST00000381527	NM_001260.1	270	atA/at																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348011	348011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	174	1088	2	ENST00000262320.3:c.1495G>A	p.Val499Met	p.V499M	ENST00000262320	NM_003502.3	499	Gtg/Atg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2221351	2221351	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	56	877	0	ENST00000326181.6:c.435del	p.Cys146ValfsTer11	p.C146Vfs*11	ENST00000326181	NM_032271.2	145	acG/ac																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346839	89346847	+	inframe_deletion	In_Frame_Del	DEL	GACGTCCTC	GACGTCCTC	-			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	12	393	0	ENST00000301030.4:c.6103_6111del	p.Glu2035_Val2037del	p.E2035_V2037del	ENST00000301030	NM_001256183.1	2035	GAGGACGTC/-																																																																															
FANCA	2175	MSKCC	GRCh37	16	89877363	89877363	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	83	717	1	ENST00000389301.3:c.400C>A	p.Pro134Thr	p.P134T	ENST00000389301	NM_000135.2	134	Cct/Act																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130337	11130337	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs281875226		P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	89	1008	1	ENST00000358026.2:c.2576C>T	p.Thr859Met	p.T859M	ENST00000358026	NM_001128849.1	859	aCg/aTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291861	15291861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	80	1072	1	ENST00000263388.2:c.2905C>T	p.Arg969Trp	p.R969W	ENST00000263388	NM_000435.2	969	Cgg/Tgg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302669	15302669	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	40	1101	0	ENST00000263388.2:c.689del	p.Gly230ValfsTer6	p.G230Vfs*6	ENST00000263388	NM_000435.2	230	gGt/gt																																																																															
MLL4	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	38	943	2	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909674	50909674	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199700312		P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	71	978	0	ENST00000440232.2:c.1394G>A	p.Arg465Gln	p.R465Q	ENST00000440232	NM_002691.3	465	cGg/cAg																																																																															
ALK	238	MSKCC	GRCh37	2	29419708	29419708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	34	744	0	ENST00000389048.3:c.4092G>T	p.Gln1364His	p.Q1364H	ENST00000389048	NM_004304.4	1364	caG/caT																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022809	31022809	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	44	769	0	ENST00000375687.4:c.2294T>G	p.Leu765Arg	p.L765R	ENST00000375687	NM_015338.5	765	cTg/cGg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643390	52643390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	80	816	0	ENST00000394830.3:c.2506C>T	p.Arg836Trp	p.R836W	ENST00000394830	NM_018313.4	836	Cgg/Tgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187530381	187530381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	135	576	2	ENST00000441802.2:c.10162G>A	p.Val3388Ile	p.V3388I	ENST00000441802	NM_005245.3	3388	Gtc/Atc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31468080	31468080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	185	993	8	ENST00000344624.3:c.2332C>T	p.Arg778Cys	p.R778C	ENST00000344624		778	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112178831	112178831	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	30	620	0	ENST00000257430.4:c.7540A>G	p.Thr2514Ala	p.T2514A	ENST00000257430	NM_000038.5	2514	Act/Gct																																																																															
IRF4	3662	MSKCC	GRCh37	6	395000	395001	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	123	721	0	ENST00000380956.4:c.402dup	p.Gly135ArgfsTer77	p.G135Rfs*77	ENST00000380956	NM_001195286.1	132	-/A																																																																															
TAP1	6890	MSKCC	GRCh37	6	32814930	32814930	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1458831913		P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	227	969	2	ENST00000354258.4:c.2135C>T	p.Ala712Val	p.A712V	ENST00000354258	NM_000593.5	712	gCg/gTg																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89791059	89791059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	10	78	0	ENST00000336032.3:c.446C>T	p.Pro149Leu	p.P149L	ENST00000336032	NM_006813.2	149	cCg/cTg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982087	93982087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	41	729	1	ENST00000369303.4:c.1378G>A	p.Glu460Lys	p.E460K	ENST00000369303	NM_004440.3	460	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129277	152129277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	79	910	5	ENST00000206249.3:c.230G>A	p.Gly77Asp	p.G77D	ENST00000206249	NM_000125.3	77	gGc/gAc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026910	6026910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	13	213	0	ENST00000265849.7:c.1486C>T	p.His496Tyr	p.H496Y	ENST00000265849	NM_000535.5	496	Cac/Tac																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194905	29194905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	178	995	1	ENST00000240100.2:c.823C>T	p.Arg275Cys	p.R275C	ENST00000240100	NM_001394.6	275	Cgc/Tgc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139811005	139811005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	106	1036	0	ENST00000247668.2:c.616G>A	p.Val206Ile	p.V206I	ENST00000247668	NM_021138.3	206	Gtc/Atc																																																																															
AR	367	MSKCC	GRCh37	X	66765712	66765712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	51	646	1	ENST00000374690.3:c.724G>A	p.Ala242Thr	p.A242T	ENST00000374690	NM_000044.3	242	Gca/Aca																																																																															
BTK	695	MSKCC	GRCh37	X	100625010	100625010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	165	388	0	ENST00000308731.7:c.367C>T	p.Arg123Trp	p.R123W	ENST00000308731	NM_000061.2	123	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	163	891	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	251	1312	0	ENST00000269305.4:c.389T>G	p.Leu130Arg	p.L130R	ENST00000269305	NM_001126112.2	130	cTc/cGc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138382788	138382788	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	130	911	0	ENST00000289153.2:c.2756A>G	p.Asp919Gly	p.D919G	ENST00000289153	NM_006219.2	919	gAc/gGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	81	823	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175956129	175956129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	51	778	0	ENST00000367669.3:c.2083G>A	p.Asp695Asn	p.D695N	ENST00000367669	NM_022457.5	695	Gat/Aat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923650	72923650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	62	728	0	ENST00000268489.5:c.3428G>T	p.Arg1143Met	p.R1143M	ENST00000268489	NM_006885.3	1143	aGg/aTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221340	1221340	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0015256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	92	754	0	ENST00000326873.7:c.862+1G>C		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10610129	10610132	+	frameshift_variant	Frame_Shift_Del	DEL	ATCT	ATCT	-			P-0015256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	113	932	0	ENST00000171111.5:c.578_581del	p.Gln193LeufsTer36	p.Q193Lfs*36	ENST00000171111	NM_203500.1	193	cAGATt/ct																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266605	198266605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	33	587	2	ENST00000335508.6:c.2231C>T	p.Ala744Val	p.A744V	ENST00000335508	NM_012433.2	744	gCt/gTt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143326475	143326475	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0015256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	26	510	0	ENST00000262992.4:c.139T>C	p.Cys47Arg	p.C47R	ENST00000262992	NM_001101669.1	47	Tgc/Cgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518150	187518150	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	59	712	0	ENST00000441802.2:c.12544G>T	p.Gly4182Ter	p.G4182*	ENST00000441802	NM_005245.3	4182	Gga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518174	187518174	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	53	612	0	ENST00000441802.2:c.12520C>G	p.Pro4174Ala	p.P4174A	ENST00000441802	NM_005245.3	4174	Ccg/Gcg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341130	8341130	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	54	813	0	ENST00000356435.5:c.5086G>T	p.Gly1696Ter	p.G1696*	ENST00000356435		1696	Gga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	52	810	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0015259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	19	366	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
ATM	472	MSKCC	GRCh37	11	108214045	108214045	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0015259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	52	534	0	ENST00000278616.4:c.8365A>T	p.Lys2789Ter	p.K2789*	ENST00000278616	NM_000051.3	2789	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0015263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	95	732	2	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0015263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	358	616	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	233	713	0	ENST00000288602.6:c.1397G>A	p.Gly466Glu	p.G466E	ENST00000288602	NM_004333.4	466	gGa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0015263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	718	1322	2	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398254	25398254	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	259	890	0	ENST00000256078.4:c.65A>T	p.Gln22Leu	p.Q22L	ENST00000256078	NM_033360.2	22	cAg/cTg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59937157	59937157	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	100	585	0	ENST00000259008.2:c.205G>A	p.Gly69Arg	p.G69R	ENST00000259008	NM_032043.2	69	Ggg/Agg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180045898	180045898	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	68	682	0	ENST00000261937.6:c.2873G>C	p.Gly958Ala	p.G958A	ENST00000261937	NM_182925.4	958	gGa/gCa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	235	579	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624296	89624296	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	292	753	0	ENST00000371953.3:c.70G>C	p.Asp24His	p.D24H	ENST00000371953	NM_000314.4	24	Gac/Cac																																																																															
CIC	23152	MSKCC	GRCh37	19	42799281	42799281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	300	617	2	ENST00000575354.2:c.4765G>A	p.Glu1589Lys	p.E1589K	ENST00000575354	NM_015125.3	1589	Gag/Aag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164508	47164508	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201756643		P-0015264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	212	527	0	ENST00000409792.3:c.1618C>T	p.Arg540Ter	p.R540*	ENST00000409792	NM_014159.6	540	Cga/Tga																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44923034	44923034	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	424	458	2	ENST00000377967.4:c.1895G>A	p.Trp632Ter	p.W632*	ENST00000377967	NM_021140.2	632	tGg/tAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028835	47028835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	439	465	0	ENST00000329236.7:c.139G>A	p.Glu47Lys	p.E47K	ENST00000329236	NM_001204466.1	47	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	34	567	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711876	89711876	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	13	332	0	ENST00000371953.3:c.494G>A	p.Gly165Glu	p.G165E	ENST00000371953	NM_000314.4	165	gGa/gAa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919734	50919734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	331	652	1	ENST00000440232.2:c.2902C>T	p.Arg968Cys	p.R968C	ENST00000440232	NM_002691.3	968	Cgc/Tgc																																																																															
FH	2271	MSKCC	GRCh37	1	241667473	241667473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	31	241	0	ENST00000366560.3:c.977G>A	p.Gly326Glu	p.G326E	ENST00000366560	NM_000143.3	326	gGa/gAa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717637	89717637	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	47	355	0	ENST00000371953.3:c.662A>G	p.Lys221Arg	p.K221R	ENST00000371953	NM_000314.4	221	aAg/aGg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061115	38061115	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	80	215	0	ENST00000250448.2:c.874G>T	p.Glu292Ter	p.E292*	ENST00000250448	NM_004496.3	292	Gag/Tag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31495482	31495482	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	C			P-0015273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	199	418	0	ENST00000344624.3:c.1669-3C>G		p.X557_splice	ENST00000344624		557																																																																																
ROS1	6098	MSKCC	GRCh37	6	117687422	117687422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	28	266	0	ENST00000368508.3:c.2629G>A	p.Ala877Thr	p.A877T	ENST00000368508	NM_002944.2	877	Gcc/Acc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923188	39923188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	21	196	0	ENST00000378444.4:c.3520G>A	p.Glu1174Lys	p.E1174K	ENST00000378444	NM_001123385.1	1174	Gaa/Aaa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121438947	121438947	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	173	804	0	ENST00000257555.6:c.1848C>G	p.Ser616Arg	p.S616R	ENST00000257555		616	agC/agG																																																																															
TP53	7157	MSKCC	GRCh37	17	7579521	7579522	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0015276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	159	639	0	ENST00000269305.4:c.165_166del	p.Glu56ArgfsTer6	p.E56Rfs*6	ENST00000269305	NM_001126112.2	55	acTGaa/acaa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660148	227660148	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	96	530	0	ENST00000305123.5:c.3307A>T	p.Thr1103Ser	p.T1103S	ENST00000305123	NM_005544.2	1103	Act/Tct																																																																															
RB1	5925	MSKCC	GRCh37	13	48916798	48916798	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	37	399	0	ENST00000267163.4:c.328C>G	p.Leu110Val	p.L110V	ENST00000267163	NM_000321.2	110	Cta/Gta																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836626	89836627	+	missense_variant	Missense_Mutation	DNP	CC	CC	GT			P-0015277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	72	681	0	ENST00000389301.3:c.2263_2264delinsAC	p.Gly755Thr	p.G755T	ENST00000389301	NM_000135.2	755	GGa/ACa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15950301	15950302	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	167	620	0	ENST00000268712.3:c.6642dup	p.Lys2215Ter	p.K2215*	ENST00000268712	NM_006311.3	2214	-/T																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0015278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	43	228	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0015278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	18	604	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	369	334	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578453	7578453	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	558	691	1	ENST00000269305.4:c.477del	p.Met160TrpfsTer10	p.M160Wfs*10	ENST00000269305	NM_001126112.2	159	gcC/gc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332618	70332618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	161	523	0	ENST00000373644.4:c.523G>A	p.Val175Ile	p.V175I	ENST00000373644	NM_030625.2	175	Gta/Ata																																																																															
MLL3	58508	MSKCC	GRCh37	7	151860384	151860396	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCAAAGCTCTT	CTGCAAAGCTCTT	-			P-0015283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	198	480	0	ENST00000262189.6:c.10266_10278del	p.Gln3422HisfsTer16	p.Q3422Hfs*16	ENST00000262189	NM_170606.2	3422	caAAGAGCTTTGCAG/ca																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285855	87285855	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	176	476	0	ENST00000277120.3:c.192T>A	p.Asp64Glu	p.D64E	ENST00000277120		64	gaT/gaA																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117695979	117695979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	21	432	0	ENST00000369458.3:c.458C>T	p.Pro153Leu	p.P153L	ENST00000369458	NM_024626.3	153	cCg/cTg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647016	23647016	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	12	580	0	ENST00000261584.4:c.851delC	p.Thr284IlefsTer4	p.T284Ifs*4	ENST00000261584	NM_024675.3	284	aCt/at																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	1408	609	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578467	7578467	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	1032	663	0	ENST00000269305.4:c.463A>C	p.Thr155Pro	p.T155P	ENST00000269305	NM_001126112.2	155	Acc/Ccc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	71873195	71873195	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	269	392	0	ENST00000357731.5:c.999G>T	p.Trp333Cys	p.W333C	ENST00000357731	NM_173808.2	333	tgG/tgT																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115267920	115267920	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	699	498	0	ENST00000438362.2:c.1813G>T	p.Gly605Trp	p.G605W	ENST00000438362	NM_001242891.1	605	Ggg/Tgg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156848913	156848913	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	2755	536	0	ENST00000524377.1:c.1806-1G>A		p.X602_splice	ENST00000524377	NM_002529.3	602																																																																																
NTRK1	4914	MSKCC	GRCh37	1	156849068	156849068	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	3883	749	0	ENST00000524377.1:c.1960C>A	p.Arg654Ser	p.R654S	ENST00000524377	NM_002529.3	654	Cgc/Agc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716067	243716067	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	273	436	0	ENST00000263826.5:c.1127T>C	p.Leu376Ser	p.L376S	ENST00000263826	NM_005465.4	376	tTg/tCg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123263369	123263369	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	505	374	0	ENST00000358487.5:c.1374del	p.Met459CysfsTer23	p.M459Cfs*23	ENST00000358487	NM_000141.4	458	ccC/cc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456746	32456746	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	704	533	0	ENST00000332351.3:c.146G>T	p.Ser49Ile	p.S49I	ENST00000332351	NM_024426.4	49	aGc/aTc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575101	64575101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	423	508	0	ENST00000337652.1:c.721G>A	p.Val241Met	p.V241M	ENST00000337652	NM_130803.2	241	Gtg/Atg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022891	12022891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	863	577	0	ENST00000396373.4:c.997G>T	p.Gly333Trp	p.G333W	ENST00000396373	NM_001987.4	333	Ggg/Tgg																																																																															
MLL2	8085	MSKCC	GRCh37	12	49433768	49433768	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	1130	745	0	ENST00000301067.7:c.7785del	p.Ser2597AlafsTer94	p.S2597Afs*94	ENST00000301067	NM_003482.3	2595	ggG/gg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861895	57861895	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	356	495	2	ENST00000228682.2:c.1196G>T	p.Gly399Val	p.G399V	ENST00000228682	NM_005269.2	399	gGg/gTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865728	57865728	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	1091	689	0	ENST00000228682.2:c.3205G>T	p.Gly1069Cys	p.G1069C	ENST00000228682	NM_005269.2	1069	Ggc/Tgc																																																																															
BLM	641	MSKCC	GRCh37	15	91303888	91303888	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	684	399	0	ENST00000355112.3:c.1285A>G	p.Arg429Gly	p.R429G	ENST00000355112	NM_000057.2	429	Aga/Gga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830519	72830519	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	418	526	1	ENST00000268489.5:c.6062A>G	p.Gln2021Arg	p.Q2021R	ENST00000268489	NM_006885.3	2021	cAg/cGg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984615	72984615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	989	650	0	ENST00000268489.5:c.2969G>T	p.Arg990Leu	p.R990L	ENST00000268489	NM_006885.3	990	cGc/cTc																																																																															
EZH1	2145	MSKCC	GRCh37	17	40872305	40872305	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	840	516	0	ENST00000428826.2:c.650G>T	p.Arg217Leu	p.R217L	ENST00000428826		217	cGa/cTa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435162	56435162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	389	570	0	ENST00000407977.2:c.1975G>A	p.Gly659Ser	p.G659S	ENST00000407977		659	Ggt/Agt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120209	70120209	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	463	602	0	ENST00000245479.2:c.1211C>A	p.Pro404His	p.P404H	ENST00000245479	NM_000346.3	404	cCc/cAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11169039	11169040	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	809	607	1	ENST00000344626.4:c.4533_4533+1delinsTT		p.X1511_splice	ENST00000344626	NM_003072.3	1511																																																																																
ALK	238	MSKCC	GRCh37	2	29473998	29473998	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1134	665	634	0	ENST00000389048.3:c.2177G>T	p.Trp726Leu	p.W726L	ENST00000389048	NM_004304.4	726	tGg/tTg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41268720	41268720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	357	252	0	ENST00000349496.5:c.958G>A	p.Gly320Arg	p.G320R	ENST00000349496	NM_001904.3	320	Gga/Aga																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146751	185146751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	766	572	1	ENST00000265026.3:c.382G>T	p.Gly128Cys	p.G128C	ENST00000265026	NM_004721.4	128	Ggt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247301	153247301	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	335	373	0	ENST00000281708.4:c.1501G>T	p.Val501Phe	p.V501F	ENST00000281708	NM_033632.3	501	Gtt/Ttt																																																																															
APC	324	MSKCC	GRCh37	5	112175926	112175926	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	319	221	0	ENST00000257430.4:c.4637del	p.Asn1546MetfsTer19	p.N1546Mfs*19	ENST00000257430	NM_000038.5	1545	tcA/tc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117686752	117686752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	695	351	0	ENST00000368508.3:c.2965C>T	p.His989Tyr	p.H989Y	ENST00000368508	NM_002944.2	989	Cat/Tat																																																																															
PARK2	5071	MSKCC	GRCh37	6	161771175	161771175	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	478	548	0	ENST00000366898.1:c.1354G>T	p.Glu452Ter	p.E452*	ENST00000366898	NM_004562.2	452	Gag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81392114	81392114	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	207	313	0	ENST00000222390.5:c.163C>A	p.Pro55Thr	p.P55T	ENST00000222390	NM_000601.4	55	Cca/Aca																																																																															
HGF	3082	MSKCC	GRCh37	7	81392191	81392191	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	T			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	102	138	0	ENST00000222390.5:c.89-3T>A		p.X30_splice	ENST00000222390	NM_000601.4	30																																																																																
SMO	6608	MSKCC	GRCh37	7	128829105	128829105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	183	45	1	ENST00000249373.3:c.113G>T	p.Gly38Val	p.G38V	ENST00000249373	NM_005631.4	38	gGg/gTg																																																																															
MLL3	58508	MSKCC	GRCh37	7	151880210	151880210	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	263	317	0	ENST00000262189.6:c.5114G>C	p.Arg1705Pro	p.R1705P	ENST00000262189	NM_170606.2	1705	cGc/cCc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020564	69020564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	614	337	0	ENST00000288368.4:c.2936A>T	p.Gln979Leu	p.Q979L	ENST00000288368	NM_024870.2	979	cAa/cTa																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249918	110249918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	633	442	0	ENST00000374672.4:c.757G>A	p.Gly253Ser	p.G253S	ENST00000374672	NM_004235.4	253	Ggc/Agc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610154	10610154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	290	694	0	ENST00000171111.5:c.556G>T	p.Gly186Cys	p.G186C	ENST00000171111	NM_203500.1	186	Ggc/Tgc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868282	37868282	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	635	530	0	ENST00000269571.5:c.1003A>T	p.Ser335Cys	p.S335C	ENST00000269571		335	Agc/Tgc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78938087	78938089	+	inframe_deletion	In_Frame_Del	DEL	ACT	ACT	-			P-0015286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1428	226	682	0	ENST00000306801.3:c.3970_3972del	p.Tyr1324del	p.Y1324del	ENST00000306801	NM_020761.2	1322	gACTac/gac																																																																															
STK11	6794	MSKCC	GRCh37	19	1221920	1221948	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACAGGCTCCTCGCCGGCTTCTCCTCAGG	GACAGGCTCCTCGCCGGCTTCTCCTCAGG	-			P-0015286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	207	592	1	ENST00000326873.7:c.863-26_865del		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																																
DOT1L	84444	MSKCC	GRCh37	19	2202713	2202713	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	213	601	0	ENST00000398665.3:c.722A>C	p.Asn241Thr	p.N241T	ENST00000398665	NM_032482.2	241	aAt/aCt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2202720	2202733	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCTTTGGTCCTG	TGCCTTTGGTCCTG	-			P-0015286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	223	605	0	ENST00000398665.3:c.729_742del	p.Phe243LeufsTer35	p.F243Lfs*35	ENST00000398665	NM_032482.2	243	ttTGCCTTTGGTCCTGag/ttag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11129645	11129645	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	282	680	0	ENST00000344626.4:c.2451C>A	p.Asn817Lys	p.N817K	ENST00000344626	NM_003072.3	817	aaC/aaA																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971137	21971137	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	104	482	0	ENST00000304494.5:c.221A>G	p.Asp74Gly	p.D74G	ENST00000304494	NM_000077.4	74	gAc/gGc																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2494319	2494319	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	304	985	0	ENST00000355716.4:c.710T>C	p.Val237Ala	p.V237A	ENST00000355716	NM_003820.2	237	gTg/gCg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9787025	9787025	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	61	717	0	ENST00000377346.4:c.3056T>G	p.Phe1019Cys	p.F1019C	ENST00000377346	NM_005026.3	1019	tTt/tGt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11177124	11177124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	243	632	1	ENST00000361445.4:c.6953C>T	p.Thr2318Ile	p.T2318I	ENST00000361445	NM_004958.3	2318	aCc/aTc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11264621	11264621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	197	526	1	ENST00000361445.4:c.3941C>T	p.Ala1314Val	p.A1314V	ENST00000361445	NM_004958.3	1314	gCc/gTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16237602	16237602	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	139	407	1	ENST00000375759.3:c.1049G>T	p.Ser350Ile	p.S350I	ENST00000375759	NM_015001.2	350	aGc/aTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258029	16258029	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	40	552	0	ENST00000375759.3:c.5294A>G	p.Lys1765Arg	p.K1765R	ENST00000375759	NM_015001.2	1765	aAg/aGg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258641	16258641	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	51	629	0	ENST00000375759.3:c.5906A>G	p.Lys1969Arg	p.K1969R	ENST00000375759	NM_015001.2	1969	aAg/aGg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16263853	16263853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	236	766	0	ENST00000375759.3:c.10222C>T	p.Pro3408Ser	p.P3408S	ENST00000375759	NM_015001.2	3408	Cct/Tct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099056	27099056	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	421	846	2	ENST00000324856.7:c.3472G>T	p.Gly1158Ter	p.G1158*	ENST00000324856	NM_006015.4	1158	Gga/Tga																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39318113	39318113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	207	771	0	ENST00000373001.3:c.689G>A	p.Ser230Asn	p.S230N	ENST00000373001	NM_022157.3	230	aGt/aAt																																																																															
MYCL1	4610	MSKCC	GRCh37	1	40363208	40363208	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	240	552	0	ENST00000397332.2:c.1021C>A	p.Leu341Met	p.L341M	ENST00000397332	NM_001033082.2	341	Ctg/Atg																																																																															
MYCL1	4610	MSKCC	GRCh37	1	40363274	40363274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	54	672	0	ENST00000397332.2:c.955C>A	p.Leu319Met	p.L319M	ENST00000397332	NM_001033082.2	319	Ctg/Atg																																																																															
MPL	4352	MSKCC	GRCh37	1	43818382	43818382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	293	776	1	ENST00000372470.3:c.1847G>A	p.Cys616Tyr	p.C616Y	ENST00000372470	NM_005373.2	616	tGc/tAc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46715711	46715711	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	76	766	0	ENST00000371975.4:c.130C>T	p.Gln44Ter	p.Q44*	ENST00000371975	NM_003579.3	44	Cag/Tag																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46724379	46724379	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	311	651	0	ENST00000371975.4:c.232T>A	p.Leu78Met	p.L78M	ENST00000371975	NM_003579.3	78	Ttg/Atg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748145	72748145	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	225	465	0	ENST00000357731.5:c.33T>A	p.Cys11Ter	p.C11*	ENST00000357731	NM_173808.2	11	tgT/tgA																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466309	120466309	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	205	624	0	ENST00000256646.2:c.4810A>G	p.Arg1604Gly	p.R1604G	ENST00000256646	NM_024408.3	1604	Agg/Ggg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120509025	120509025	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	327	705	0	ENST00000256646.2:c.1541A>T	p.Asn514Ile	p.N514I	ENST00000256646	NM_024408.3	514	aAt/aTt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838002	156838002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	77	1062	2	ENST00000524377.1:c.535G>A	p.Gly179Arg	p.G179R	ENST00000524377	NM_002529.3	179	Ggg/Agg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162735809	162735809	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	70	625	0	ENST00000367921.3:c.1118A>G	p.Asn373Ser	p.N373S	ENST00000367921	NM_006182.2	373	aAc/aGc																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518500	204518500	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	189	376	0	ENST00000367182.3:c.1163C>A	p.Pro388His	p.P388H	ENST00000367182	NM_001278516.1	388	cCc/cAc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243727022	243727022	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	160	430	0	ENST00000263826.5:c.948G>T	p.Glu316Asp	p.E316D	ENST00000263826	NM_005465.4	316	gaG/gaT																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115859	8115859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	330	711	0	ENST00000346208.3:c.1205C>A	p.Ser402Tyr	p.S402Y	ENST00000346208		402	tCc/tAc																																																																															
TET1	80312	MSKCC	GRCh37	10	70406238	70406238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	244	830	1	ENST00000373644.4:c.3752C>T	p.Ala1251Val	p.A1251V	ENST00000373644	NM_030625.2	1251	gCa/gTa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	212	626	1	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154354	2154354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	261	968	2	ENST00000434045.2:c.574G>A	p.Ala192Thr	p.A192T	ENST00000434045	NM_001127598.1	192	Gcc/Acc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741751	17741751	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	371	847	0	ENST00000250003.3:c.422A>C	p.Asn141Thr	p.N141T	ENST00000250003	NM_002478.4	141	aAc/aCc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741867	17741867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	23	228	0	ENST00000250003.3:c.538G>A	p.Ala180Thr	p.A180T	ENST00000250003	NM_002478.4	180	Gcg/Acg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64128009	64128009	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	266	962	1	ENST00000334205.4:c.407C>A	p.Ala136Asp	p.A136D	ENST00000334205	NM_003942.2	136	gCt/gAt																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67196460	67196460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	232	682	1	ENST00000312629.5:c.86G>A	p.Cys29Tyr	p.C29Y	ENST00000312629	NM_003952.2	29	tGt/tAt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94201047	94201047	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	134	370	0	ENST00000323929.3:c.1030C>A	p.Leu344Ile	p.L344I	ENST00000323929	NM_005591.3	344	Ctt/Att																																																																															
YAP1	10413	MSKCC	GRCh37	11	101985014	101985014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	286	639	1	ENST00000282441.5:c.461C>T	p.Thr154Ile	p.T154I	ENST00000282441	NM_001130145.2	154	aCa/aTa																																																																															
ATM	472	MSKCC	GRCh37	11	108106556	108106556	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	151	356	0	ENST00000278616.4:c.491G>T	p.Trp164Leu	p.W164L	ENST00000278616	NM_000051.3	164	tGg/tTg																																																																															
ATM	472	MSKCC	GRCh37	11	108143447	108143447	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	168	490	0	ENST00000278616.4:c.3154-2A>G		p.X1052_splice	ENST00000278616	NM_000051.3	1052																																																																																
ATM	472	MSKCC	GRCh37	11	108153534	108153534	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	146	415	0	ENST00000278616.4:c.3674A>G	p.Gln1225Arg	p.Q1225R	ENST00000278616	NM_000051.3	1225	cAa/cGa																																																																															
ATM	472	MSKCC	GRCh37	11	108164163	108164164	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	130	344	0	ENST00000278616.4:c.4741dupA	p.Ile1581AsnfsTer5	p.I1581Nfs*5	ENST00000278616	NM_000051.3	1579	caa/cAaa																																																																															
ATM	472	MSKCC	GRCh37	11	108236064	108236064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	38	551	0	ENST00000278616.4:c.9000G>T	p.Gln3000His	p.Q3000H	ENST00000278616	NM_000051.3	3000	caG/caT																																																																															
SDHD	6392	MSKCC	GRCh37	11	111959601	111959601	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	67	751	0	ENST00000375549.3:c.180G>T	p.Lys60Asn	p.K60N	ENST00000375549	NM_003002.3	60	aaG/aaT																																																																															
MLL	4297	MSKCC	GRCh37	11	118343356	118343356	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	187	371	2	ENST00000534358.1:c.1482G>T	p.Glu494Asp	p.E494D	ENST00000534358	NM_005933.3	494	gaG/gaT																																																																															
MLL	4297	MSKCC	GRCh37	11	118362022	118362022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	114	356	0	ENST00000534358.1:c.4808C>T	p.Ser1603Leu	p.S1603L	ENST00000534358	NM_005933.3	1603	tCa/tTa																																																																															
MLL	4297	MSKCC	GRCh37	11	118375905	118375905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	273	584	0	ENST00000534358.1:c.9298G>A	p.Gly3100Arg	p.G3100R	ENST00000534358	NM_005933.3	3100	Gga/Aga																																																																															
MLL	4297	MSKCC	GRCh37	11	118375961	118375961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	223	586	1	ENST00000534358.1:c.9354G>A	p.Met3118Ile	p.M3118I	ENST00000534358	NM_005933.3	3118	atG/atA																																																																															
MLL	4297	MSKCC	GRCh37	11	118376347	118376350	+	missense_variant	Missense_Mutation	ONP	CCCC	CCCC	TCCT			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	240	664	0	ENST00000534358.1:c.9740_9743delinsTCCT	p.Ala3247_Pro3248delinsValLeu	p.A3247_P3248delinsVL	ENST00000534358	NM_005933.3	3247	gCCCCt/gTCCTt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21628447	21628447	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	208	764	0	ENST00000421138.2:c.1171A>T	p.Met391Leu	p.M391L	ENST00000421138		391	Atg/Ttg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs770248150		P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	205	534	0	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																																																															
MLL2	8085	MSKCC	GRCh37	12	49427656	49427656	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	40	539	0	ENST00000301067.7:c.10832A>T	p.Gln3611Leu	p.Q3611L	ENST00000301067	NM_003482.3	3611	cAa/cTa																																																																															
MLL2	8085	MSKCC	GRCh37	12	49438088	49438088	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	335	717	0	ENST00000301067.7:c.5084-1G>T		p.X1695_splice	ENST00000301067	NM_003482.3	1695																																																																																
MLL2	8085	MSKCC	GRCh37	12	49443908	49443908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	317	882	3	ENST00000301067.7:c.3463C>A	p.Leu1155Met	p.L1155M	ENST00000301067	NM_003482.3	1155	Ctg/Atg																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50479207	50479207	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	257	744	0	ENST00000394963.4:c.55T>C	p.Ser19Pro	p.S19P	ENST00000394963	NM_003076.4	19	Tca/Cca																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50484063	50484063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	389	820	0	ENST00000394963.4:c.913C>A	p.Leu305Met	p.L305M	ENST00000394963	NM_003076.4	305	Ctg/Atg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859414	57859414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	241	631	0	ENST00000228682.2:c.559G>A	p.Val187Ile	p.V187I	ENST00000228682	NM_005269.2	187	Gtt/Att																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859638	57859638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	269	692	0	ENST00000228682.2:c.692C>A	p.Ser231Tyr	p.S231Y	ENST00000228682	NM_005269.2	231	tCt/tAt																																																																															
MDM2	4193	MSKCC	GRCh37	12	69230480	69230480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	182	574	0	ENST00000462284.1:c.869G>A	p.Gly290Glu	p.G290E	ENST00000462284	NM_002392.5	290	gGg/gAg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111884997	111884997	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	312	878	0	ENST00000341259.2:c.998del	p.Gly333AlafsTer40	p.G333Afs*40	ENST00000341259	NM_005475.2	332	aGg/ag																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121435315	121435315	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	227	808	0	ENST00000257555.6:c.1348A>G	p.Asn450Asp	p.N450D	ENST00000257555		450	Aac/Gac																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121435468	121435468	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	678	1044	0	ENST00000257555.6:c.1501G>A	p.Ala501Thr	p.A501T	ENST00000257555		501	Gcc/Acc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557703	21557703	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	330	762	0	ENST00000382592.4:c.2142G>T	p.Lys714Asn	p.K714N	ENST00000382592	NM_014572.2	714	aaG/aaT																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562307	21562307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	336	830	1	ENST00000382592.4:c.1612G>A	p.Ala538Thr	p.A538T	ENST00000382592	NM_014572.2	538	Gca/Aca																																																																															
FLT3	2322	MSKCC	GRCh37	13	28599018	28599018	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	234	601	3	ENST00000241453.7:c.2270G>T	p.Gly757Val	p.G757V	ENST00000241453	NM_004119.2	757	gGg/gTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911073	32911074	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	175	565	1	ENST00000380152.3:c.2588dup	p.Asn863LysfsTer18	p.N863Kfs*18	ENST00000380152		861	caa/cAaa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953652	32953652	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	158	372	0	ENST00000380152.3:c.8953G>T	p.Val2985Phe	p.V2985F	ENST00000380152		2985	Gtt/Ttt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972483	32972483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	305	855	0	ENST00000380152.3:c.9833C>A	p.Pro3278His	p.P3278H	ENST00000380152		3278	cCt/cAt																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134420	41134420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	199	600	0	ENST00000379561.5:c.1208C>A	p.Pro403Gln	p.P403Q	ENST00000379561	NM_002015.3	403	cCg/cAg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134937	41134937	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	105	349	0	ENST00000379561.5:c.691A>G	p.Thr231Ala	p.T231A	ENST00000379561	NM_002015.3	231	Act/Gct																																																																															
RB1	5925	MSKCC	GRCh37	13	49039378	49039378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	76	871	0	ENST00000267163.4:c.2363G>A	p.Ser788Asn	p.S788N	ENST00000267163	NM_000321.2	788	aGc/aAc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346401	73346401	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs143362001		P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	126	356	1	ENST00000377767.4:c.1399C>T	p.Arg467Ter	p.R467*	ENST00000377767	NM_014953.3	467	Cga/Tga																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524605	103524606	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	149	431	0	ENST00000355739.4:c.2739dup	p.Val914SerfsTer16	p.V914Sfs*16	ENST00000355739	NM_000123.3	912	-/A																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30132984	30132984	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	259	728	0	ENST00000331968.5:c.617del	p.Asn206ThrfsTer58	p.N206Tfs*58	ENST00000331968	NM_002742.2	206	aAc/ac																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873659	35873659	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	236	565	0	ENST00000216797.5:c.192G>T	p.Glu64Asp	p.E64D	ENST00000216797	NM_020529.2	64	gaG/gaT																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68301881	68301881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	170	594	0	ENST00000487270.1:c.283C>T	p.His95Tyr	p.H95Y	ENST00000487270	NM_133509.3	95	Cat/Tat																																																																															
RAD51B	5890	MSKCC	GRCh37	14	69061312	69061313	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	24	104	0	ENST00000487270.1:c.1153dup	p.Ter385LeufsTer15	p.*385Lfs*15	ENST00000487270	NM_133509.3	383	att/aTtt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562395	95562395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	197	467	0	ENST00000343455.3:c.4862G>A	p.Cys1621Tyr	p.C1621Y	ENST00000343455	NM_177438.2	1621	tGt/tAt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95590944	95590944	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	147	330	0	ENST00000343455.3:c.965C>A	p.Ala322Asp	p.A322D	ENST00000343455	NM_177438.2	322	gCt/gAt																																																																															
AKT1	207	MSKCC	GRCh37	14	105241497	105241497	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	67	868	2	ENST00000349310.3:c.483C>A	p.Phe161Leu	p.F161L	ENST00000349310	NM_001014432.1	161	ttC/ttA																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38591611	38591611	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	64	591	2	ENST00000299084.4:c.70C>T	p.Arg24Ter	p.R24*	ENST00000299084	NM_152594.2	24	Cga/Tga																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38632044	38632044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	294	825	1	ENST00000299084.4:c.530C>T	p.Pro177Leu	p.P177L	ENST00000299084	NM_152594.2	177	cCc/cTc																																																																															
MGA	23269	MSKCC	GRCh37	15	41988372	41988372	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	217	684	0	ENST00000219905.7:c.1164T>G	p.Asp388Glu	p.D388E	ENST00000219905	NM_001164273.1	388	gaT/gaG																																																																															
MGA	23269	MSKCC	GRCh37	15	42041649	42041649	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	240	690	0	ENST00000219905.7:c.5844G>T	p.Gln1948His	p.Q1948H	ENST00000219905	NM_001164273.1	1948	caG/caT																																																																															
MGA	23269	MSKCC	GRCh37	15	42058600	42058600	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	124	396	0	ENST00000219905.7:c.8320T>C	p.Ser2774Pro	p.S2774P	ENST00000219905	NM_001164273.1	2774	Tca/Cca																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43707827	43707827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	288	899	0	ENST00000382044.4:c.5054C>T	p.Ala1685Val	p.A1685V	ENST00000382044	NM_001141980.1	1685	gCc/gTc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43713329	43713329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	402	1213	1	ENST00000382044.4:c.4144G>A	p.Glu1382Lys	p.E1382K	ENST00000382044	NM_001141980.1	1382	Gag/Aag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43738591	43738591	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	233	543	1	ENST00000382044.4:c.3034C>A	p.Leu1012Met	p.L1012M	ENST00000382044	NM_001141980.1	1012	Ctg/Atg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	338136	338136	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	299	736	0	ENST00000262320.3:c.2575del	p.Glu859ArgfsTer79	p.E859Rfs*79	ENST00000262320	NM_003502.3	859	Gag/ag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348100	348100	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	290	909	0	ENST00000262320.3:c.1406G>T	p.Ser469Ile	p.S469I	ENST00000262320	NM_003502.3	469	aGc/aTc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348206	348206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	413	1011	1	ENST00000262320.3:c.1300C>T	p.Pro434Ser	p.P434S	ENST00000262320	NM_003502.3	434	Ccg/Tcg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	287	691	3	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2093617	2093617	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	391	1013	0	ENST00000219066.1:c.660G>T	p.Lys220Asn	p.K220N	ENST00000219066	NM_002528.5	220	aaG/aaT																																																																															
TSC2	7249	MSKCC	GRCh37	16	2135297	2135297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	282	862	7	ENST00000219476.3:c.4636G>A	p.Ala1546Thr	p.A1546T	ENST00000219476	NM_000548.3	1546	Gcc/Acc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226345	2226345	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	353	987	0	ENST00000326181.6:c.1958G>T	p.Arg653Leu	p.R653L	ENST00000326181	NM_032271.2	653	cGg/cTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778567	3778567	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	294	744	0	ENST00000262367.5:c.6481A>G	p.Met2161Val	p.M2161V	ENST00000262367	NM_004380.2	2161	Atg/Gtg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858601	9858601	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	199	482	0	ENST00000330684.3:c.2800A>G	p.Met934Val	p.M934V	ENST00000330684	NM_001134407.1	934	Atg/Gtg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041771	14041771	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	185	492	0	ENST00000311895.7:c.2318G>T	p.Gly773Val	p.G773V	ENST00000311895	NM_005236.2	773	gGt/gTt																																																																															
NUP93	9688	MSKCC	GRCh37	16	56866246	56866246	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	232	453	0	ENST00000308159.5:c.1291C>A	p.Pro431Thr	p.P431T	ENST00000308159	NM_014669.4	431	Cca/Aca																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645450	67645450	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	59	500	1	ENST00000264010.4:c.715G>T	p.Glu239Ter	p.E239*	ENST00000264010	NM_006565.3	239	Gag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821567	72821567	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	105	306	1	ENST00000268489.5:c.10608C>A	p.Ser3536Arg	p.S3536R	ENST00000268489	NM_006885.3	3536	agC/agA																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827898	72827898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	354	700	2	ENST00000268489.5:c.8683G>A	p.Val2895Ile	p.V2895I	ENST00000268489	NM_006885.3	2895	Gtc/Atc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993731	72993731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	200	522	1	ENST00000268489.5:c.314del	p.Pro105ArgfsTer4	p.P105Rfs*4	ENST00000268489	NM_006885.3	105	cCg/cg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993849	72993849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	206	485	0	ENST00000268489.5:c.196G>A	p.Ala66Thr	p.A66T	ENST00000268489	NM_006885.3	66	Gcg/Acg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347359	89347359	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	316	983	1	ENST00000301030.4:c.5591C>A	p.Ala1864Asp	p.A1864D	ENST00000301030	NM_001256183.1	1864	gCt/gAt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347440	89347440	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	333	830	1	ENST00000301030.4:c.5510del	p.Pro1837ArgfsTer126	p.P1837Rfs*126	ENST00000301030	NM_001256183.1	1837	cCg/cg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89809258	89809258	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	370	714	0	ENST00000389301.3:c.3715del	p.Glu1239LysfsTer8	p.E1239Kfs*8	ENST00000389301	NM_000135.2	1239	Gaa/aa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89816208	89816208	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	343	767	0	ENST00000389301.3:c.3169C>T	p.Gln1057Ter	p.Q1057*	ENST00000389301	NM_000135.2	1057	Cag/Tag																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216380	7216380	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	215	769	2	ENST00000380728.2:c.868delC	p.Gln290SerfsTer55	p.Q290Sfs*55	ENST00000380728		290	Cag/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578218	7578218	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	239	1003	0	ENST00000269305.4:c.631A>G	p.Thr211Ala	p.T211A	ENST00000269305	NM_001126112.2	211	Act/Gct																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15964792	15964792	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	340	677	0	ENST00000268712.3:c.5804T>C	p.Val1935Ala	p.V1935A	ENST00000268712	NM_006311.3	1935	gTg/gCg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30325943	30325943	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	207	582	1	ENST00000322652.5:c.2141A>G	p.Glu714Gly	p.E714G	ENST00000322652	NM_015355.2	714	gAa/gGa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687245	37687246	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	260	586	0	ENST00000447079.4:c.4153dup	p.Glu1385GlyfsTer40	p.E1385Gfs*40	ENST00000447079	NM_015083.1	1383	-/G																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687373	37687373	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	253	649	1	ENST00000447079.4:c.4277G>T	p.Ser1426Ile	p.S1426I	ENST00000447079	NM_015083.1	1426	aGc/aTc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687469	37687469	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	164	409	0	ENST00000447079.4:c.4373A>G	p.His1458Arg	p.H1458R	ENST00000447079	NM_015083.1	1458	cAc/cGc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37884023	37884023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	74	902	0	ENST00000269571.5:c.3494C>T	p.Ala1165Val	p.A1165V	ENST00000269571		1165	gCc/gTc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370287	40370287	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	182	887	0	ENST00000293328.3:c.1051A>G	p.Thr351Ala	p.T351A	ENST00000293328	NM_012448.3	351	Act/Gct																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244243	41244243	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	255	753	0	ENST00000357654.3:c.3305A>G	p.Asn1102Ser	p.N1102S	ENST00000357654	NM_007294.3	1102	aAt/aGt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246661	41246661	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	234	539	0	ENST00000357654.3:c.887G>T	p.Arg296Ile	p.R296I	ENST00000357654	NM_007294.3	296	aGa/aTa																																																																															
MSI2	124540	MSKCC	GRCh37	17	55754347	55754347	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	270	781	1	ENST00000284073.2:c.946-1G>T		p.X316_splice	ENST00000284073	NM_138962.2	316																																																																																
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771831816		P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	128	347	1	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56787305	56787305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	280	702	1	ENST00000337432.4:c.791G>A	p.Gly264Asp	p.G264D	ENST00000337432	NM_058216.2	264	gGc/gAc																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56811557	56811557	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	184	576	0	ENST00000337432.4:c.1105T>C	p.Ser369Pro	p.S369P	ENST00000337432	NM_058216.2	369	Tca/Cca																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58678122	58678122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	358	784	1	ENST00000305921.3:c.347C>T	p.Ala116Val	p.A116V	ENST00000305921	NM_003620.3	116	gCc/gTc																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732318	74732318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	210	330	0	ENST00000359995.5:c.591G>T	p.Lys197Asn	p.K197N	ENST00000359995	NM_001195427.1	197	aaG/aaT																																																																															
STK11	6794	MSKCC	GRCh37	19	1207175	1207175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	384	1003	0	ENST00000326873.7:c.263T>C	p.Ile88Thr	p.I88T	ENST00000326873	NM_000455.4	88	aTc/aCc																																																																															
STK11	6794	MSKCC	GRCh37	19	1219373	1219373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	332	871	0	ENST00000326873.7:c.425G>A	p.Ser142Asn	p.S142N	ENST00000326873	NM_000455.4	142	aGc/aAc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221232	1221232	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	315	893	0	ENST00000326873.7:c.755T>C	p.Leu252Pro	p.L252P	ENST00000326873	NM_000455.4	252	cTg/cCg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622396	1622396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	236	941	3	ENST00000344749.5:c.568G>T	p.Gly190Cys	p.G190C	ENST00000344749	NM_001136139.2	190	Ggt/Tgt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222530	2222530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	260	1029	1	ENST00000398665.3:c.3362C>T	p.Ser1121Leu	p.S1121L	ENST00000398665	NM_032482.2	1121	tCg/tTg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4101061	4101061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	134	434	0	ENST00000262948.5:c.661G>A	p.Asp221Asn	p.D221N	ENST00000262948	NM_030662.3	221	Gac/Aac																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4117531	4117531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	202	367	0	ENST00000262948.5:c.189G>T	p.Lys63Asn	p.K63N	ENST00000262948	NM_030662.3	63	aaG/aaT																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245926	5245926	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	391	1050	1	ENST00000357368.4:c.849G>T	p.Glu283Asp	p.E283D	ENST00000357368	NM_002850.3	283	gaG/gaT																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10251469	10251469	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	244	730	0	ENST00000340748.4:c.3463T>G	p.Phe1155Val	p.F1155V	ENST00000340748		1155	Ttc/Gtc																																																																															
CARM1	10498	MSKCC	GRCh37	19	11018751	11018751	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1086	350	990	1	ENST00000327064.4:c.386del	p.Gly129AlafsTer34	p.G129Afs*34	ENST00000327064	NM_199141.1	128	cGg/cg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031764	11031764	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1170	83	1059	0	ENST00000327064.4:c.1576A>G	p.Ser526Gly	p.S526G	ENST00000327064	NM_199141.1	526	Agt/Ggt																																																																															
CARM1	10498	MSKCC	GRCh37	19	11032084	11032084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	345	869	1	ENST00000327064.4:c.1649G>A	p.Arg550Gln	p.R550Q	ENST00000327064	NM_199141.1	550	cGg/cAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096864	11096864	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	432	1086	1	ENST00000344626.4:c.356-1G>T		p.X119_splice	ENST00000344626	NM_003072.3	119																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11107214	11107214	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	96	663	0	ENST00000344626.4:c.1806T>A	p.Asp602Glu	p.D602E	ENST00000344626	NM_003072.3	602	gaT/gaA																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11136097	11136097	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	293	766	0	ENST00000344626.4:c.3082-1G>A		p.X1028_splice	ENST00000344626	NM_003072.3	1028																																																																																
CALR	811	MSKCC	GRCh37	19	13050241	13050241	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	232	447	1	ENST00000316448.5:c.194-1G>T		p.X65_splice	ENST00000316448	NM_004343.3	65																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15272288	15272288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	251	976	1	ENST00000263388.2:c.6151C>T	p.Pro2051Ser	p.P2051S	ENST00000263388	NM_000435.2	2051	Cct/Tct																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281236	15281236	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	379	1117	0	ENST00000263388.2:c.5020C>A	p.Leu1674Ile	p.L1674I	ENST00000263388	NM_000435.2	1674	Ctc/Atc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291842	15291842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	93	982	2	ENST00000263388.2:c.2924del	p.Gly975AlafsTer297	p.G975Afs*297	ENST00000263388	NM_000435.2	975	gGc/gc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299950	15299950	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	200	866	0	ENST00000263388.2:c.1228A>G	p.Asn410Asp	p.N410D	ENST00000263388	NM_000435.2	410	Aac/Gac																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349605	15349605	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	355	1054	2	ENST00000263377.2:c.3969G>T	p.Gln1323His	p.Q1323H	ENST00000263377	NM_058243.2	1323	caG/caT																																																																															
BRD4	23476	MSKCC	GRCh37	19	15378281	15378281	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	55	649	0	ENST00000263377.2:c.505A>G	p.Thr169Ala	p.T169A	ENST00000263377	NM_058243.2	169	Acc/Gcc																																																																															
MLL4	9757	MSKCC	GRCh37	19	36216408	36216408	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	323	1060	0	ENST00000222270.7:c.3671C>A	p.Pro1224Gln	p.P1224Q	ENST00000222270	NM_014727.1	1224	cCa/cAa																																																																															
AKT2	208	MSKCC	GRCh37	19	40741933	40741933	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	319	1059	4	ENST00000392038.2:c.1039C>A	p.Arg347Ser	p.R347S	ENST00000392038	NM_001626.4	347	Cgc/Agc																																																																															
AXL	558	MSKCC	GRCh37	19	41754647	41754647	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	285	747	0	ENST00000301178.4:c.1634-1G>T		p.X545_splice	ENST00000301178	NM_021913.4	545																																																																																
CIC	23152	MSKCC	GRCh37	19	42793999	42793999	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	497	863	0	ENST00000575354.2:c.1361-1G>A		p.X454_splice	ENST00000575354	NM_015125.3	454																																																																																
ERCC2	2068	MSKCC	GRCh37	19	45860910	45860910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	156	948	0	ENST00000391945.4:c.1285G>A	p.Ala429Thr	p.A429T	ENST00000391945	NM_000400.3	429	Gcc/Acc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902239	50902239	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	380	1196	0	ENST00000440232.2:c.131T>C	p.Met44Thr	p.M44T	ENST00000440232	NM_002691.3	44	aTg/aCg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909452	50909452	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	355	844	0	ENST00000440232.2:c.1256C>A	p.Pro419His	p.P419H	ENST00000440232	NM_002691.3	419	cCt/cAt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909694	50909694	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1052471		P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	325	1025	0	ENST00000440232.2:c.1414T>C	p.Tyr472His	p.Y472H	ENST00000440232	NM_002691.3	472	Tac/Cac																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909713	50909713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	443	1036	2	ENST00000440232.2:c.1433G>A	p.Ser478Asn	p.S478N	ENST00000440232	NM_002691.3	478	aGc/aAc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965362	25965362	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	295	851	1	ENST00000435504.4:c.3844A>T	p.Ile1282Phe	p.I1282F	ENST00000435504		1282	Atc/Ttc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972809	25972809	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	41	488	0	ENST00000435504.4:c.1616A>G	p.Lys539Arg	p.K539R	ENST00000435504		539	aAg/aGg																																																																															
ALK	238	MSKCC	GRCh37	2	30143363	30143363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	273	945	0	ENST00000389048.3:c.163G>A	p.Ala55Thr	p.A55T	ENST00000389048	NM_004304.4	55	Gca/Aca																																																																															
SOS1	6654	MSKCC	GRCh37	2	39285929	39285930	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	167	541	0	ENST00000402219.2:c.229dup	p.Ser77LysfsTer7	p.S77Kfs*7	ENST00000402219	NM_005633.3	77	agt/aAgt																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46611790	46611790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	250	599	0	ENST00000263734.3:c.2604G>T	p.Gln868His	p.Q868H	ENST00000263734	NM_001430.4	868	caG/caT																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702166	47702166	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	142	347	0	ENST00000233146.2:c.1762T>C	p.Tyr588His	p.Y588H	ENST00000233146	NM_000251.2	588	Tat/Cat																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027815	48027815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	203	434	0	ENST00000234420.5:c.2693C>A	p.Pro898His	p.P898H	ENST00000234420	NM_000179.2	898	cCt/cAt																																																																															
REL	5966	MSKCC	GRCh37	2	61145630	61145630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	305	686	1	ENST00000295025.8:c.742C>T	p.Pro248Ser	p.P248S	ENST00000295025	NM_002908.2	248	Cca/Tca																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881570	111881570	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	301	760	2	ENST00000393256.3:c.248T>C	p.Met83Thr	p.M83T	ENST00000393256	NM_006538.4	83	aTg/aCg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128036914	128036914	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	212	668	0	ENST00000285398.2:c.1565A>T	p.Tyr522Phe	p.Y522F	ENST00000285398	NM_000122.1	522	tAt/tTt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096178	178096178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	194	478	0	ENST00000397062.3:c.1153C>T	p.Pro385Ser	p.P385S	ENST00000397062	NM_006164.4	385	Cct/Tct																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098837	178098837	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	322	768	0	ENST00000397062.3:c.208T>C	p.Phe70Leu	p.F70L	ENST00000397062	NM_006164.4	70	Ttt/Ctt																																																																															
PMS1	5378	MSKCC	GRCh37	2	190682831	190682831	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	177	577	0	ENST00000441310.2:c.512del	p.Lys171ArgfsTer7	p.K171Rfs*7	ENST00000441310	NM_000534.4	169	atA/at																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198265046	198265046	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	214	413	0	ENST00000335508.6:c.2831C>A	p.Ser944Tyr	p.S944Y	ENST00000335508	NM_012433.2	944	tCt/tAt																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735377	204735377	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	135	298	0	ENST00000302823.3:c.178T>C	p.Tyr60His	p.Y60H	ENST00000302823	NM_005214.4	60	Tat/Cat																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543856	212543856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	288	570	1	ENST00000342788.4:c.1543C>T	p.Pro515Ser	p.P515S	ENST00000342788	NM_005235.2	515	Cct/Tct																																																																															
INHA	3623	MSKCC	GRCh37	2	220439464	220439464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	32	502	1	ENST00000243786.2:c.317C>A	p.Ala106Asp	p.A106D	ENST00000243786	NM_002191.3	106	gCt/gAt																																																																															
INHA	3623	MSKCC	GRCh37	2	220439700	220439701	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	318	854	0	ENST00000243786.2:c.562_563dupCT	p.Leu189CysfsTer2	p.L189Cfs*2	ENST00000243786	NM_002191.3	185	gct/gCTct																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662467	227662467	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	223	561	0	ENST00000305123.5:c.988A>G	p.Ser330Gly	p.S330G	ENST00000305123	NM_005544.2	330	Agt/Ggt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31383265	31383265	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	119	662	0	ENST00000328111.2:c.1177T>C	p.Cys393Arg	p.C393R	ENST00000328111	NM_006892.3	393	Tgc/Cgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40979275	40979275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	255	607	0	ENST00000373198.4:c.1858C>T	p.Pro620Ser	p.P620S	ENST00000373198	NM_133170.3	620	Cct/Tct																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62311299	62311299	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs201938707		P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	124	344	1	ENST00000508582.2:c.1207C>T	p.Arg403Cys	p.R403C	ENST00000508582		403	Cgt/Tgt																																																																															
ERG	2078	MSKCC	GRCh37	21	39775557	39775557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	277	675	2	ENST00000288319.7:c.463G>A	p.Val155Ile	p.V155I	ENST00000288319	NM_182918.3	155	Gtc/Atc																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288098	21288098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	48	504	0	ENST00000354336.3:c.343G>A	p.Ala115Thr	p.A115T	ENST00000354336	NM_005207.3	115	Gca/Aca																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22127186	22127186	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	239	647	0	ENST00000215832.6:c.942G>T	p.Glu314Asp	p.E314D	ENST00000215832	NM_002745.4	314	gaG/gaT																																																																															
EP300	2033	MSKCC	GRCh37	22	41513608	41513608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	210	757	2	ENST00000263253.7:c.512C>T	p.Ala171Val	p.A171V	ENST00000263253	NM_001429.3	171	gCg/gTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41574679	41574679	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	412	1045	2	ENST00000263253.7:c.6970delC	p.His2324ThrfsTer29	p.H2324Tfs*29	ENST00000263253	NM_001429.3	2322	Ccc/cc																																																																															
VHL	7428	MSKCC	GRCh37	3	10183563	10183563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	336	981	0	ENST00000256474.2:c.32C>T	p.Ala11Val	p.A11V	ENST00000256474	NM_000551.3	11	gCc/gTc																																																																															
VHL	7428	MSKCC	GRCh37	3	10191522	10191522	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	221	516	1	ENST00000256474.2:c.515C>A	p.Pro172His	p.P172H	ENST00000256474	NM_000551.3	172	cCt/cAt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37045891	37045891	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	45	517	0	ENST00000231790.2:c.307-1G>T		p.X103_splice	ENST00000231790	NM_000249.3	103																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266826	41266826	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	151	377	1	ENST00000349496.5:c.497T>C	p.Val166Ala	p.V166A	ENST00000349496	NM_001904.3	166	gTg/gCg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275054	41275054	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	110	386	0	ENST00000349496.5:c.1220A>G	p.Gln407Arg	p.Q407R	ENST00000349496	NM_001904.3	407	cAg/cGg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162515	47162515	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	139	322	0	ENST00000409792.3:c.3611T>G	p.Ile1204Ser	p.I1204S	ENST00000409792	NM_014159.6	1204	aTt/aGt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933437	49933438	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	216	889	0	ENST00000296474.3:c.2752dup	p.Leu918ProfsTer21	p.L918Pfs*21	ENST00000296474	NM_002447.2	918	ctg/cCtg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49935551	49935551	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	373	885	1	ENST00000296474.3:c.1813G>T	p.Gly605Ter	p.G605*	ENST00000296474	NM_002447.2	605	Gga/Tga																																																																															
MITF	4286	MSKCC	GRCh37	3	69928307	69928307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	209	423	0	ENST00000352241.4:c.127G>A	p.Ala43Thr	p.A43T	ENST00000352241	NM_198159.2	43	Gcc/Acc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026194	71026194	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	160	319	0	ENST00000318789.4:c.1429-1G>T		p.X477_splice	ENST00000318789	NM_032682.5	477																																																																																
FOXP1	27086	MSKCC	GRCh37	3	71090528	71090528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	156	407	0	ENST00000318789.4:c.820C>T	p.His274Tyr	p.H274Y	ENST00000318789	NM_032682.5	274	Cat/Tat																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427611	72427611	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	130	342	0	ENST00000477973.2:c.877G>T	p.Glu293Asp	p.E293D	ENST00000477973	NM_012234.5	293	gaG/gaT																																																																															
RYBP	23429	MSKCC	GRCh37	3	72428207	72428207	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	201	528	0	ENST00000477973.2:c.683A>G	p.Thr229Ala	p.T229A	ENST00000477973	NM_012234.5	229	Aca/Gca																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259191	89259191	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	30	444	0	ENST00000336596.2:c.338del	p.Leu113Ter	p.L113*	ENST00000336596	NM_005233.5	112	gTt/gt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390110	89390110	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	137	429	0	ENST00000336596.2:c.859T>C	p.Cys287Arg	p.C287R	ENST00000336596	NM_005233.5	287	Tgt/Cgt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204842	128204842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1151	87	1119	1	ENST00000341105.2:c.599del	p.Gly200ValfsTer18	p.G200Vfs*18	ENST00000341105	NM_032638.4	200	gGt/gt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920490	134920490	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	298	666	0	ENST00000398015.3:c.2305C>A	p.Leu769Ile	p.L769I	ENST00000398015	NM_004441.4	769	Ctc/Atc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138375045	138375045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	231	706	2	ENST00000289153.2:c.3014C>T	p.Ala1005Val	p.A1005V	ENST00000289153	NM_006219.2	1005	gCg/gTg																																																																															
ATR	545	MSKCC	GRCh37	3	142185186	142185186	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	125	633	0	ENST00000350721.4:c.6877A>G	p.Ile2293Val	p.I2293V	ENST00000350721	NM_001184.3	2293	Att/Gtt																																																																															
ATR	545	MSKCC	GRCh37	3	142281210	142281210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	239	575	1	ENST00000350721.4:c.1034C>A	p.Ala345Asp	p.A345D	ENST00000350721	NM_001184.3	345	gCt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919159	178919159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	106	335	0	ENST00000263967.3:c.644G>A	p.Cys215Tyr	p.C215Y	ENST00000263967	NM_006218.2	215	tGt/tAt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430596	181430596	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	197	784	1	ENST00000325404.1:c.448G>T	p.Gly150Cys	p.G150C	ENST00000325404	NM_003106.3	150	Ggc/Tgc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430868	181430868	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	303	1094	1	ENST00000325404.1:c.720G>T	p.Met240Ile	p.M240I	ENST00000325404	NM_003106.3	240	atG/atT																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505332	186505332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	153	421	0	ENST00000323963.5:c.958C>T	p.Arg320Trp	p.R320W	ENST00000323963		320	Cgg/Tgg																																																																															
BCL6	604	MSKCC	GRCh37	3	187447562	187447562	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	62	652	1	ENST00000232014.4:c.631G>T	p.Glu211Ter	p.E211*	ENST00000232014	NM_001130845.1	211	Gag/Tag																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902658	1902658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	330	908	0	ENST00000382891.5:c.277G>A	p.Ala93Thr	p.A93T	ENST00000382891	NM_133335.3	93	Gca/Aca																																																																															
KIT	3815	MSKCC	GRCh37	4	55593594	55593594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	159	485	0	ENST00000288135.5:c.1660G>A	p.Glu554Lys	p.E554K	ENST00000288135	NM_000222.2	554	Gaa/Aaa																																																																															
KDR	3791	MSKCC	GRCh37	4	55968595	55968595	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199504669		P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	308	697	0	ENST00000263923.4:c.2068G>A	p.Ala690Thr	p.A690T	ENST00000263923	NM_002253.2	690	Gca/Aca																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467610	66467610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	169	463	0	ENST00000273854.3:c.659G>A	p.Cys220Tyr	p.C220Y	ENST00000273854	NM_004439.5	220	tGc/tAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467644	66467644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202165566		P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	161	436	0	ENST00000273854.3:c.625G>A	p.Gly209Arg	p.G209R	ENST00000273854	NM_004439.5	209	Gga/Aga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535290	66535290	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	298	966	0	ENST00000273854.3:c.171del	p.Ser58AlafsTer4	p.S58Afs*4	ENST00000273854	NM_004439.5	57	ccC/cc																																																																															
TET2	54790	MSKCC	GRCh37	4	106157276	106157276	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	283	648	0	ENST00000380013.4:c.2177A>G	p.Gln726Arg	p.Q726R	ENST00000380013	NM_001127208.2	726	cAg/cGg																																																																															
TET2	54790	MSKCC	GRCh37	4	106182949	106182949	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	163	539	0	ENST00000380013.4:c.3988T>A	p.Ser1330Thr	p.S1330T	ENST00000380013	NM_001127208.2	1330	Tcc/Acc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245454	153245454	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	275	676	0	ENST00000281708.4:c.1737del	p.His580ThrfsTer4	p.H580Tfs*4	ENST00000281708	NM_033632.3	579	ggG/gg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247264	153247264	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	206	595	1	ENST00000281708.4:c.1538G>T	p.Arg513Met	p.R513M	ENST00000281708	NM_033632.3	513	aGg/aTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187527336	187527336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	299	484	1	ENST00000441802.2:c.10238C>T	p.Ser3413Phe	p.S3413F	ENST00000441802	NM_005245.3	3413	tCt/tTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534472	187534473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	200	481	0	ENST00000441802.2:c.9253dup	p.Leu3085ProfsTer2	p.L3085Pfs*2	ENST00000441802	NM_005245.3	3085	ctt/cCtt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540583	187540583	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	208	432	0	ENST00000441802.2:c.7157A>T	p.Asn2386Ile	p.N2386I	ENST00000441802	NM_005245.3	2386	aAt/aTt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39003661	39003661	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	150	467	1	ENST00000357387.3:c.259del	p.Cys87ValfsTer4	p.C87Vfs*4	ENST00000357387	NM_152756.3	87	Tgt/gt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56170982	56170982	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	116	290	0	ENST00000399503.3:c.1810G>T	p.Gly604Ter	p.G604*	ENST00000399503	NM_005921.1	604	Gga/Tga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56176603	56176603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	36	479	2	ENST00000399503.3:c.2153C>T	p.Ala718Val	p.A718V	ENST00000399503	NM_005921.1	718	gCa/gTa																																																																															
APC	324	MSKCC	GRCh37	5	112116577	112116577	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	179	573	0	ENST00000257430.4:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000257430	NM_000038.5	208	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112154676	112154676	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	120	382	0	ENST00000257430.4:c.947A>G	p.Tyr316Cys	p.Y316C	ENST00000257430	NM_000038.5	316	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112170647	112170647	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	118	359	0	ENST00000257430.4:c.1744-1G>A		p.X582_splice	ENST00000257430	NM_000038.5	582																																																																																
APC	324	MSKCC	GRCh37	5	112176170	112176171	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	246	608	0	ENST00000257430.4:c.4883dup	p.His1629AlafsTer3	p.H1629Afs*3	ENST00000257430	NM_000038.5	1627	caa/cAaa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131930736	131930736	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	128	373	0	ENST00000265335.6:c.1969G>T	p.Ala657Ser	p.A657S	ENST00000265335		657	Gcc/Tcc																																																																															
NPM1	4869	MSKCC	GRCh37	5	170819968	170819968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	195	438	0	ENST00000296930.5:c.510G>T	p.Glu170Asp	p.E170D	ENST00000296930	NM_002520.6	170	gaG/gaT																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517816	176517816	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	235	749	0	ENST00000292408.4:c.430del	p.Gln144SerfsTer67	p.Q144Sfs*67	ENST00000292408	NM_213647.1	142	taC/ta																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721043	176721043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	218	475	0	ENST00000439151.2:c.6674C>T	p.Pro2225Leu	p.P2225L	ENST00000439151	NM_022455.4	2225	cCa/cTa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057648	180057648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	336	939	1	ENST00000261937.6:c.307G>A	p.Ala103Thr	p.A103T	ENST00000261937	NM_182925.4	103	Gcc/Acc																																																																															
E2F3	1871	MSKCC	GRCh37	6	20486941	20486941	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	203	418	0	ENST00000346618.3:c.906A>C	p.Gln302His	p.Q302H	ENST00000346618	NM_001949.4	302	caA/caC																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26046024	26046024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	118	333	0	ENST00000540144.1:c.386G>A	p.Arg129His	p.R129H	ENST00000540144	NM_003531.2	129	cGt/cAt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056436	26056436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	111	250	0	ENST00000343677.2:c.221A>G	p.Glu74Gly	p.E74G	ENST00000343677	NM_005319.3	74	gAg/gGg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910398	29910398	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	264	637	2	ENST00000376809.5:c.68G>A	p.Trp23Ter	p.W23*	ENST00000376809	NM_002116.7	23	tGg/tAg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673051	30673051	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	316	821	0	ENST00000376406.3:c.3909delC	p.Lys1304SerfsTer57	p.K1304Sfs*57	ENST00000376406	NM_014641.2	1303	ccC/cc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169044	32169044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	245	841	0	ENST00000375023.3:c.3989G>T	p.Arg1330Met	p.R1330M	ENST00000375023	NM_004557.3	1330	aGg/aTg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180367	32180367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	296	808	1	ENST00000375023.3:c.2564G>A	p.Arg855His	p.R855H	ENST00000375023	NM_004557.3	855	cGc/cAc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797248	32797248	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1208	82	971	0	ENST00000374899.4:c.1861C>A	p.Leu621Ile	p.L621I	ENST00000374899	NM_018833.2	621	Ctt/Att																																																																															
TAP1	6890	MSKCC	GRCh37	6	32814934	32814934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	337	826	0	ENST00000354258.4:c.2131G>A	p.Val711Met	p.V711M	ENST00000354258	NM_000593.5	711	Gtg/Atg																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793759	89793759	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	54	509	0	ENST00000336032.3:c.828G>T	p.Lys276Asn	p.K276N	ENST00000336032	NM_006813.2	276	aaG/aaT																																																																															
ROS1	6098	MSKCC	GRCh37	6	117647519	117647519	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	200	597	0	ENST00000368508.3:c.5425G>T	p.Gly1809Ter	p.G1809*	ENST00000368508	NM_002944.2	1809	Gga/Tga																																																																															
ROS1	6098	MSKCC	GRCh37	6	117714484	117714484	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	137	362	0	ENST00000368508.3:c.1165G>A	p.Val389Ile	p.V389I	ENST00000368508	NM_002944.2	389	Gta/Ata																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192429	138192429	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	124	387	1	ENST00000237289.4:c.65G>T	p.Arg22Leu	p.R22L	ENST00000237289	NM_001270507.1	22	cGg/cTg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192530	138192530	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	234	572	0	ENST00000237289.4:c.169del	p.Cys57ValfsTer39	p.C57Vfs*39	ENST00000237289	NM_001270507.1	56	Ttt/tt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099599	157099599	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	37	134	0	ENST00000346085.5:c.536T>C	p.Leu179Pro	p.L179P	ENST00000346085	NM_020732.3	179	cTg/cCg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099602	157099602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	73	131	1	ENST00000346085.5:c.539G>A	p.Ser180Asn	p.S180N	ENST00000346085	NM_020732.3	180	aGc/aAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521942	157521942	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	54	595	0	ENST00000346085.5:c.4214A>G	p.Asn1405Ser	p.N1405S	ENST00000346085	NM_020732.3	1405	aAc/aGc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528039	157528039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	260	582	0	ENST00000346085.5:c.5764G>A	p.Glu1922Lys	p.E1922K	ENST00000346085	NM_020732.3	1922	Gag/Aag																																																																															
RAC1	5879	MSKCC	GRCh37	7	6439761	6439761	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	48	557	0	ENST00000356142.4:c.287T>G	p.Val96Gly	p.V96G	ENST00000356142	NM_018890.3	96	gTg/gGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268009	55268009	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	229	586	0	ENST00000275493.2:c.2849G>T	p.Cys950Phe	p.C950F	ENST00000275493	NM_005228.3	950	tGc/tTc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509469	106509469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	279	754	0	ENST00000359195.3:c.1463C>A	p.Ser488Tyr	p.S488Y	ENST00000359195	NM_002649.2	488	tCt/tAt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526692	106526692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	206	535	0	ENST00000359195.3:c.2985G>A	p.Met995Ile	p.M995I	ENST00000359195	NM_002649.2	995	atG/atA																																																																															
MET	4233	MSKCC	GRCh37	7	116339192	116339192	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	164	366	0	ENST00000397752.3:c.54G>T	p.Leu18Phe	p.L18F	ENST00000397752	NM_000245.2	18	ttG/ttT																																																																															
MET	4233	MSKCC	GRCh37	7	116395482	116395482	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	51	527	1	ENST00000397752.3:c.1775G>T	p.Arg592Met	p.R592M	ENST00000397752	NM_000245.2	592	aGg/aTg																																																																															
SMO	6608	MSKCC	GRCh37	7	128829255	128829255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	310	936	0	ENST00000249373.3:c.263C>T	p.Thr88Ile	p.T88I	ENST00000249373	NM_005631.4	88	aCc/aTc																																																																															
SMO	6608	MSKCC	GRCh37	7	128843236	128843237	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	297	772	0	ENST00000249373.3:c.349dup	p.Arg117ProfsTer19	p.R117Pfs*19	ENST00000249373	NM_005631.4	115	gcc/gCcc																																																																															
SMO	6608	MSKCC	GRCh37	7	128843374	128843374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772755154		P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	280	684	0	ENST00000249373.3:c.481C>T	p.Arg161Trp	p.R161W	ENST00000249373	NM_005631.4	161	Cgg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140481439	140481439	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	248	626	0	ENST00000288602.6:c.1369A>G	p.Ile457Val	p.I457V	ENST00000288602	NM_004333.4	457	Att/Gtt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151848667	151848667	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	20	282	0	ENST00000262189.6:c.12527-1G>T		p.X4176_splice	ENST00000262189	NM_170606.2	4176																																																																																
MLL3	58508	MSKCC	GRCh37	7	151859851	151859851	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	106	317	0	ENST00000262189.6:c.10811del	p.Lys3604ArgfsTer26	p.K3604Rfs*26	ENST00000262189	NM_170606.2	3604	aAg/ag																																																																															
MLL3	58508	MSKCC	GRCh37	7	151871220	151871220	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	200	459	0	ENST00000262189.6:c.9370A>C	p.Ser3124Arg	p.S3124R	ENST00000262189	NM_170606.2	3124	Agc/Cgc																																																																															
MLL3	58508	MSKCC	GRCh37	7	151879054	151879054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	228	646	1	ENST00000262189.6:c.5891C>T	p.Ala1964Val	p.A1964V	ENST00000262189	NM_170606.2	1964	gCa/gTa																																																																															
MLL3	58508	MSKCC	GRCh37	7	151879445	151879445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	186	509	0	ENST00000262189.6:c.5500C>T	p.Pro1834Ser	p.P1834S	ENST00000262189	NM_170606.2	1834	Cca/Tca																																																																															
MLL3	58508	MSKCC	GRCh37	7	151919086	151919086	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	136	417	0	ENST00000262189.6:c.3499G>T	p.Asp1167Tyr	p.D1167Y	ENST00000262189	NM_170606.2	1167	Gac/Tac																																																																															
MLL3	58508	MSKCC	GRCh37	7	151945017	151945017	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	23	163	0	ENST00000262189.6:c.2502A>T	p.Lys834Asn	p.K834N	ENST00000262189	NM_170606.2	834	aaA/aaT																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38148065	38148065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	384	970	2	ENST00000317025.8:c.3046G>T	p.Val1016Leu	p.V1016L	ENST00000317025	NM_023034.1	1016	Gtg/Ttg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162276	38162276	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	174	427	0	ENST00000317025.8:c.2441-1G>T		p.X814_splice	ENST00000317025	NM_023034.1	814																																																																																
FGFR1	2260	MSKCC	GRCh37	8	38271223	38271223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	300	811	0	ENST00000425967.3:c.2485C>T	p.His829Tyr	p.H829Y	ENST00000425967	NM_001174067.1	829	Cat/Tat																																																																															
LYN	4067	MSKCC	GRCh37	8	56922496	56922496	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	161	502	0	ENST00000519728.1:c.1366C>A	p.Leu456Met	p.L456M	ENST00000519728	NM_002350.3	456	Ctg/Atg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931866	68931866	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	202	881	0	ENST00000288368.4:c.296C>A	p.Pro99His	p.P99H	ENST00000288368	NM_024870.2	99	cCt/cAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68942855	68942855	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	301	860	2	ENST00000288368.4:c.667G>T	p.Val223Phe	p.V223F	ENST00000288368	NM_024870.2	223	Gtt/Ttt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69050712	69050713	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	134	538	0	ENST00000288368.4:c.4051dup	p.Tyr1351LeufsTer3	p.Y1351Lfs*3	ENST00000288368	NM_024870.2	1349	-/T																																																																															
RAD21	5885	MSKCC	GRCh37	8	117866576	117866576	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	45	642	2	ENST00000297338.2:c.1069A>T	p.Thr357Ser	p.T357S	ENST00000297338	NM_006265.2	357	Acc/Tcc																																																																															
MYC	4609	MSKCC	GRCh37	8	128750811	128750811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	290	694	0	ENST00000377970.2:c.348G>A	p.Met116Ile	p.M116I	ENST00000377970	NM_002467.4	116	atG/atA																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740373	145740373	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	416	1069	0	ENST00000428558.2:c.1567A>G	p.Ser523Gly	p.S523G	ENST00000428558	NM_004260.3	523	Agc/Ggc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741442	145741442	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1264	78	1112	0	ENST00000428558.2:c.1061T>C	p.Val354Ala	p.V354A	ENST00000428558	NM_004260.3	354	gTa/gCa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484326	8484326	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	214	599	0	ENST00000356435.5:c.3206A>G	p.Gln1069Arg	p.Q1069R	ENST00000356435		1069	cAg/cGg																																																																															
TEK	7010	MSKCC	GRCh37	9	27169492	27169492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	182	545	0	ENST00000380036.4:c.493G>A	p.Val165Met	p.V165M	ENST00000380036	NM_000459.3	165	Gtg/Atg																																																																															
TEK	7010	MSKCC	GRCh37	9	27206664	27206664	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	283	648	1	ENST00000380036.4:c.2449C>A	p.Pro817Thr	p.P817T	ENST00000380036	NM_000459.3	817	Cca/Aca																																																																															
FANCC	2176	MSKCC	GRCh37	9	97888853	97888853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	230	713	0	ENST00000289081.3:c.854C>T	p.Ala285Val	p.A285V	ENST00000289081	NM_000136.2	285	gCc/gTc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250046	110250046	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	162	698	2	ENST00000374672.4:c.629C>A	p.Pro210Gln	p.P210Q	ENST00000374672	NM_004235.4	210	cCg/cAg																																																																															
ABL1	25	MSKCC	GRCh37	9	133738240	133738240	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	338	676	0	ENST00000318560.5:c.640C>T	p.His214Tyr	p.H214Y	ENST00000318560	NM_005157.4	214	Cat/Tat																																																																															
ABL1	25	MSKCC	GRCh37	9	133760165	133760165	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	260	699	0	ENST00000318560.5:c.2488C>A	p.Leu830Ile	p.L830I	ENST00000318560	NM_005157.4	830	Ctc/Atc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771768	135771768	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	78	937	0	ENST00000298552.3:c.3349C>A	p.Leu1117Ile	p.L1117I	ENST00000298552	NM_001162426.1	1117	Cta/Ata																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772893	135772894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	242	727	0	ENST00000298552.3:c.2729dup	p.Leu910PhefsTer40	p.L910Ffs*40	ENST00000298552	NM_001162426.1	910	ttg/ttTg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772943	135772943	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	160	509	0	ENST00000298552.3:c.2680C>A	p.His894Asn	p.H894N	ENST00000298552	NM_001162426.1	894	Cat/Aat																																																																															
TSC1	7248	MSKCC	GRCh37	9	135779070	135779070	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	164	450	0	ENST00000298552.3:c.2176G>T	p.Ala726Ser	p.A726S	ENST00000298552	NM_001162426.1	726	Gca/Tca																																																																															
TSC1	7248	MSKCC	GRCh37	9	135804249	135804249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	172	390	0	ENST00000298552.3:c.11A>G	p.Gln4Arg	p.Q4R	ENST00000298552	NM_001162426.1	4	cAa/cGa																																																																															
RXRA	6256	MSKCC	GRCh37	9	137328377	137328377	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	366	933	2	ENST00000481739.1:c.1306C>A	p.Leu436Ile	p.L436I	ENST00000481739	NM_002957.4	436	Ctc/Atc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396482	139396482	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	353	932	0	ENST00000277541.6:c.5443del	p.Asp1815ThrfsTer72	p.D1815Tfs*72	ENST00000277541	NM_017617.3	1815	Gac/ac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402523	139402523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	381	754	0	ENST00000277541.6:c.3394C>T	p.Arg1132Cys	p.R1132C	ENST00000277541	NM_017617.3	1132	Cgc/Tgc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413948	139413948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	414	967	0	ENST00000277541.6:c.812C>T	p.Ala271Val	p.A271V	ENST00000277541	NM_017617.3	271	gCc/gTc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15838410	15838410	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	227	289	0	ENST00000307771.7:c.908C>A	p.Pro303His	p.P303H	ENST00000307771	NM_005089.3	303	cCc/cAc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15840932	15840932	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	18	219	0	ENST00000307771.7:c.1016T>G	p.Phe339Cys	p.F339C	ENST00000307771	NM_005089.3	339	tTc/tGc																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20150318	20150318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	163	295	0	ENST00000379607.5:c.319G>A	p.Gly107Ser	p.G107S	ENST00000379607	NM_001412.3	107	Ggc/Agc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922277	39922277	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	192	196	0	ENST00000378444.4:c.3895A>G	p.Thr1299Ala	p.T1299A	ENST00000378444	NM_001123385.1	1299	Acc/Gcc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53247467	53247467	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	271	279	0	ENST00000375401.3:c.342T>A	p.Ser114Arg	p.S114R	ENST00000375401	NM_004187.3	114	agT/agA																																																																															
MED12	9968	MSKCC	GRCh37	X	70344881	70344881	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	281	419	0	ENST00000374080.3:c.2111C>A	p.Pro704Gln	p.P704Q	ENST00000374080		704	cCa/cAa																																																																															
MED12	9968	MSKCC	GRCh37	X	70347301	70347301	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	170	280	0	ENST00000374080.3:c.2965T>C	p.Phe989Leu	p.F989L	ENST00000374080		989	Ttt/Ctt																																																																															
MED12	9968	MSKCC	GRCh37	X	70356444	70356444	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	429	484	0	ENST00000374080.3:c.5339A>G	p.Glu1780Gly	p.E1780G	ENST00000374080		1780	gAg/gGg																																																																															
ATRX	546	MSKCC	GRCh37	X	76918951	76918951	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	281	338	0	ENST00000373344.5:c.4040T>C	p.Val1347Ala	p.V1347A	ENST00000373344	NM_000489.3	1347	gTg/gCg																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2096161	2096161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	49	965	0	ENST00000219066.1:c.346G>A	p.Glu116Lys	p.E116K	ENST00000219066	NM_002528.5	116	Gag/Aag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865224	57865224	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	258	1040	0	ENST00000228682.2:c.2701T>A	p.Tyr901Asn	p.Y901N	ENST00000228682	NM_005269.2	901	Tat/Aat																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212286764	212286765	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0015294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	88	762	1	ENST00000342788.4:c.2931_2932delinsTT	p.Met977_Ala978delinsIleSer	p.M977_A978delinsIS	ENST00000342788	NM_005235.2	977	atGGct/atTTct																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023161	150023206	+	frameshift_variant	Frame_Shift_Del	DEL	AATTTCTTGTAACATTTGCCGGCTACTGACAGTATAGTTACTGGCA	AATTTCTTGTAACATTTGCCGGCTACTGACAGTATAGTTACTGGCA	-			P-0015294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	255	916	0	ENST00000253339.5:c.57_102del	p.Ala20GlyfsTer20	p.A20Gfs*20	ENST00000253339		19	ccTGCCAGTAACTATACTGTCAGTAGCCGGCAAATGTTACAAGAAATT/cc																																																																															
MLL3	58508	MSKCC	GRCh37	7	151960210	151960210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	116	289	0	ENST00000262189.6:c.1190C>T	p.Ser397Leu	p.S397L	ENST00000262189	NM_170606.2	397	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579363	7579363	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	TTT			P-0015294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	314	1105	0	ENST00000269305.4:c.324delinsAAA	p.Phe109AsnfsTer15	p.F109Nfs*15	ENST00000269305	NM_001126112.2	108	ggT/ggAAA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	33	845	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	351	867	8	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0015295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	175	699	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0015295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	58	739	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509436	106509436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	56	880	2	ENST00000359195.3:c.1430G>A	p.Arg477His	p.R477H	ENST00000359195	NM_002649.2	477	cGt/cAt																																																																															
CCND2	894	MSKCC	GRCh37	12	4388085	4388085	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0015295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	24	437	0	ENST00000261254.3:c.571G>C	p.Asp191His	p.D191H	ENST00000261254	NM_001759.3	191	Gac/Cac																																																																															
POLE	5426	MSKCC	GRCh37	12	133250238	133250238	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150032060		P-0015295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	310	975	1	ENST00000320574.5:c.1282G>A	p.Ala428Thr	p.A428T	ENST00000320574	NM_006231.2	428	Gcc/Acc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562905	21562906	+	stop_gained	Nonsense_Mutation	DNP	GA	GA	TT			P-0015295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	423	1004	1	ENST00000382592.4:c.1013_1014delinsAA	p.Phe338Ter	p.F338*	ENST00000382592	NM_014572.2	338	tTC/tAA																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24133968	24133968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	258	646	2	ENST00000263121.7:c.119G>A	p.Arg40Gln	p.R40Q	ENST00000263121	NM_003073.3	40	cGa/cAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245467	153245480	+	frameshift_variant	Frame_Shift_Del	DEL	TGAATGCAATTCCC	TGAATGCAATTCCC	-			P-0015295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	138	907	0	ENST00000281708.4:c.1711_1724del	p.Gly571HisfsTer29	p.G571Hfs*29	ENST00000281708	NM_033632.3	571	GGGAATTGCATTCAc/c																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965600	93965600	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	38	885	0	ENST00000369303.4:c.2328T>G	p.Asp776Glu	p.D776E	ENST00000369303	NM_004440.3	776	gaT/gaG																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101910062	101910062	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	84	417	0	ENST00000374994.4:c.1382G>C	p.Cys461Ser	p.C461S	ENST00000374994	NM_004612.2	461	tGt/tCt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5207955	5207955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	457	1027	2	ENST00000357368.4:c.5756G>A	p.Arg1919Gln	p.R1919Q	ENST00000357368	NM_002850.3	1919	cGg/cAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539090	187539090	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	69	743	1	ENST00000441802.2:c.8650C>T	p.Gln2884Ter	p.Q2884*	ENST00000441802	NM_005245.3	2884	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599874	10599874	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	410	947	0	ENST00000171111.5:c.1702G>T	p.Val568Phe	p.V568F	ENST00000171111	NM_203500.1	568	Gtc/Ttc																																																																															
TET2	54790	MSKCC	GRCh37	4	106180832	106180832	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	287	501	0	ENST00000380013.4:c.3860T>C	p.Phe1287Ser	p.F1287S	ENST00000380013	NM_001127208.2	1287	tTt/tCt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729819	41729819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	34	472	0	ENST00000242208.4:c.710C>A	p.Ser237Tyr	p.S237Y	ENST00000242208	NM_002192.2	237	tCc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	421	1020	0	ENST00000269305.4:c.469G>C	p.Val157Leu	p.V157L	ENST00000269305	NM_001126112.2	157	Gtc/Ctc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625170	69625170	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	362	874	2	ENST00000334134.2:c.623C>A	p.Pro208His	p.P208H	ENST00000334134	NM_005247.2	208	cCc/cAc																																																																															
EED	8726	MSKCC	GRCh37	11	85968629	85968629	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	127	565	0	ENST00000263360.6:c.625G>T	p.Val209Leu	p.V209L	ENST00000263360	NM_003797.3	209	Gta/Tta																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675099	40675099	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	226	1106	0	ENST00000249776.8:c.63G>T	p.Glu21Asp	p.E21D	ENST00000249776	NM_033286.3	21	gaG/gaT																																																																															
MGA	23269	MSKCC	GRCh37	15	41961661	41961661	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	130	673	2	ENST00000219905.7:c.569G>T	p.Gly190Val	p.G190V	ENST00000219905	NM_001164273.1	190	gGg/gTg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041815	14041815	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	265	674	0	ENST00000311895.7:c.2362C>G	p.Leu788Val	p.L788V	ENST00000311895	NM_005236.2	788	Ctc/Gtc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961041	15961041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	132	484	0	ENST00000268712.3:c.6179C>T	p.Thr2060Ile	p.T2060I	ENST00000268712	NM_006311.3	2060	aCa/aTa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096964	11096964	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	418	941	0	ENST00000344626.4:c.458del	p.Pro153ArgfsTer150	p.P153Rfs*150	ENST00000344626	NM_003072.3	152	gCc/gc																																																																															
AXL	558	MSKCC	GRCh37	19	41727935	41727935	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	2411	764	0	ENST00000301178.4:c.560G>T	p.Gly187Val	p.G187V	ENST00000301178	NM_021913.4	187	gGc/gTc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082832	16082832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	23	70	0	ENST00000281043.3:c.646G>A	p.Gly216Ser	p.G216S	ENST00000281043	NM_005378.4	216	Ggc/Agc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306566	41306566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	147	871	0	ENST00000373198.4:c.1093C>T	p.Pro365Ser	p.P365S	ENST00000373198	NM_133170.3	365	Cca/Tca																																																																															
RAC2	5880	MSKCC	GRCh37	22	37627378	37627378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	260	1131	2	ENST00000249071.6:c.341G>A	p.Gly114Asp	p.G114D	ENST00000249071	NM_002872.4	114	gGc/gAc																																																																															
KIT	3815	MSKCC	GRCh37	4	55598165	55598165	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	206	527	0	ENST00000288135.5:c.2361+1G>A		p.X787_splice	ENST00000288135	NM_000222.2	787																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66201821	66201821	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	211	715	1	ENST00000273854.3:c.2681G>T	p.Gly894Val	p.G894V	ENST00000273854	NM_004439.5	894	gGc/gTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056406	180056406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	136	620	1	ENST00000261937.6:c.838C>A	p.Pro280Thr	p.P280T	ENST00000261937	NM_182925.4	280	Ccc/Acc																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197234	26197234	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	227	478	0	ENST00000356476.2:c.245A>T	p.Asp82Val	p.D82V	ENST00000356476		82	gAt/gTt																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138197234	138197234	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	116	574	0	ENST00000237289.4:c.736T>C	p.Tyr246His	p.Y246H	ENST00000237289	NM_001270507.1	246	Tac/Cac																																																																															
LATS1	9113	MSKCC	GRCh37	6	150016354	150016354	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	146	567	3	ENST00000253339.5:c.352A>T	p.Met118Leu	p.M118L	ENST00000253339		118	Atg/Ttg																																																																															
MPL	4352	MSKCC	GRCh37	1	43812121	43812121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	159	656	1	ENST00000372470.3:c.986C>T	p.Pro329Leu	p.P329L	ENST00000372470	NM_005373.2	329	cCc/cTc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120497663	120497663	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	69	534	0	ENST00000256646.2:c.2219G>C	p.Gly740Ala	p.G740A	ENST00000256646	NM_024408.3	740	gGa/gCa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843479	156843479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	165	746	0	ENST00000524377.1:c.905C>T	p.Pro302Leu	p.P302L	ENST00000524377	NM_002529.3	302	cCc/cTc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845960	156845960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	324	1032	0	ENST00000524377.1:c.1590C>A	p.His530Gln	p.H530Q	ENST00000524377	NM_002529.3	530	caC/caA																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246518364	246518364	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	108	719	0	ENST00000388985.4:c.197G>T	p.Arg66Leu	p.R66L	ENST00000388985		66	cGc/cTc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115837	8115838	+	missense_variant	Missense_Mutation	DNP	GC	GC	TG			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	230	1061	6	ENST00000346208.3:c.1183_1184delinsTG	p.Ala395Cys	p.A395C	ENST00000346208		395	GCc/TGc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332684	70332684	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	157	947	0	ENST00000373644.4:c.589G>C	p.Glu197Gln	p.E197Q	ENST00000373644	NM_030625.2	197	Gag/Cag																																																																															
TET1	80312	MSKCC	GRCh37	10	70441172	70441172	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs140933489		P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	90	766	0	ENST00000373644.4:c.4841A>G	p.Asp1614Gly	p.D1614G	ENST00000373644	NM_030625.2	1614	gAt/gGt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94201004	94201004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	55	685	0	ENST00000323929.3:c.1073C>T	p.Pro358Leu	p.P358L	ENST00000323929	NM_005591.3	358	cCa/cTa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865092	57865093	+	frameshift_variant	Frame_Shift_Ins	INS	CC	CC	TCT			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	308	1262	0	ENST00000228682.2:c.2569_2570delinsTCT	p.Pro857SerfsTer15	p.P857Sfs*15	ENST00000228682	NM_005269.2	857	CCc/TCTc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438394	110438394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	38	106	0	ENST00000375856.3:c.7A>T	p.Ser3Cys	p.S3C	ENST00000375856	NM_003749.2	3	Agc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	41961436	41961438	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	TAG	TAG	AA			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	171	651	0	ENST00000219905.7:c.344_346delinsAA	p.Leu115Ter	p.L115*	ENST00000219905	NM_001164273.1	115	tTAGat/tAAat																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	368	627	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
AXIN1	8312	MSKCC	GRCh37	16	364667	364667	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	214	1004	0	ENST00000262320.3:c.895G>C	p.Glu299Gln	p.E299Q	ENST00000262320	NM_003502.3	299	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	265	987	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29663394	29663394	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	136	932	1	ENST00000358273.4:c.6050C>G	p.Thr2017Ser	p.T2017S	ENST00000358273	NM_001042492.2	2017	aCc/aGc																																																																															
NF1	4763	MSKCC	GRCh37	17	29701105	29701105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	208	800	4	ENST00000358273.4:c.8452G>A	p.Ala2818Thr	p.A2818T	ENST00000358273	NM_001042492.2	2818	Gca/Aca																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118996	70118996	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1257	258	1013	1	ENST00000245479.2:c.568G>T	p.Glu190Ter	p.E190*	ENST00000245479	NM_000346.3	190	Gag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1207184	1207184	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	429	1168	1	ENST00000326873.7:c.272G>T	p.Gly91Val	p.G91V	ENST00000326873	NM_000455.4	91	gGg/gTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7122679	7122679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	137	1079	0	ENST00000302850.5:c.3475G>T	p.Asp1159Tyr	p.D1159Y	ENST00000302850	NM_000208.2	1159	Gac/Tac																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965365	25965365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	249	1024	0	ENST00000435504.4:c.3841G>T	p.Ala1281Ser	p.A1281S	ENST00000435504		1281	Gca/Tca																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794941	242794942	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	108	1134	0	ENST00000334409.5:c.267dup	p.Gly90ArgfsTer16	p.G90Rfs*16	ENST00000334409	NM_005018.2	89	-/C																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944463	40944463	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	154	925	0	ENST00000373198.4:c.2039C>A	p.Thr680Lys	p.T680K	ENST00000373198	NM_133170.3	680	aCa/aAa																																																																															
KIT	3815	MSKCC	GRCh37	4	55561876	55561876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	169	560	3	ENST00000288135.5:c.266C>T	p.Ala89Val	p.A89V	ENST00000288135	NM_000222.2	89	gCc/gTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539894	187539894	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	81	671	0	ENST00000441802.2:c.7846G>C	p.Val2616Leu	p.V2616L	ENST00000441802	NM_005245.3	2616	Gtt/Ctt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111758	56111758	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	20	35	0	ENST00000399503.3:c.358G>C	p.Gly120Arg	p.G120R	ENST00000399503	NM_005921.1	120	Ggc/Cgc																																																																															
APC	324	MSKCC	GRCh37	5	112174793	112174793	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	97	558	1	ENST00000257430.4:c.3502G>T	p.Glu1168Ter	p.E1168*	ENST00000257430	NM_000038.5	1168	Gaa/Taa																																																																															
IRF4	3662	MSKCC	GRCh37	6	401537	401537	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	144	787	1	ENST00000380956.4:c.859C>A	p.Leu287Met	p.L287M	ENST00000380956	NM_001195286.1	287	Ctg/Atg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32184836	32184836	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	169	676	2	ENST00000375023.3:c.1747G>T	p.Gly583Trp	p.G583W	ENST00000375023	NM_004557.3	583	Ggg/Tgg																																																																															
PIM1	5292	MSKCC	GRCh37	6	37138630	37138630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	318	999	0	ENST00000373509.5:c.164G>T	p.Gly55Val	p.G55V	ENST00000373509	NM_002648.3	55	gGc/gTc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553213	106553213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	115	831	0	ENST00000369096.4:c.1178C>A	p.Ala393Glu	p.A393E	ENST00000369096	NM_001198.3	393	gCa/gAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140494190	140494190	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	302	1190	0	ENST00000288602.6:c.1058A>C	p.His353Pro	p.H353P	ENST00000288602	NM_004333.4	353	cAt/cCt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69030882	69030882	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	T			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	99	553	0	ENST00000288368.4:c.3421+3G>T		p.X1141_splice	ENST00000288368	NM_024870.2	1141																																																																																
JAK2	3717	MSKCC	GRCh37	9	5090454	5090454	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	54	387	1	ENST00000381652.3:c.2770A>T	p.Asn924Tyr	p.N924Y	ENST00000381652	NM_004972.3	924	Aat/Tat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507338	8507338	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	80	735	0	ENST00000356435.5:c.1640A>G	p.Tyr547Cys	p.Y547C	ENST00000356435		547	tAt/tGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115838	8115838	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	230	1067	0	ENST00000346208.3:c.1184C>G	p.Ala395Gly	p.A395G	ENST00000346208		395	gCc/gGc																																																																															
NF1	4763	MSKCC	GRCh37	17	29579965	29579966	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	T			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	70	679	0	ENST00000358273.4:c.4120_4121delinsT	p.His1374SerfsTer4	p.H1374Sfs*4	ENST00000358273	NM_001042492.2	1374	CAc/Tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0015301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	312	812	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	394684	394684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	123	882	0	ENST00000399788.2:c.5011C>T	p.Pro1671Ser	p.P1671S	ENST00000399788	NM_001042603.1	1671	Cca/Tca																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15942749	15942749	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0015302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	45	569	0	ENST00000268712.3:c.6953C>G	p.Ser2318Ter	p.S2318*	ENST00000268712	NM_006311.3	2318	tCa/tGa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106003	8106003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	59	567	1	ENST00000346208.3:c.823C>T	p.Arg275Trp	p.R275W	ENST00000346208		275	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0015302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	309	914	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
ERCC5	2073	MSKCC	GRCh37	13	103527666	103527666	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	44	325	0	ENST00000355739.4:c.2974C>T	p.Arg992Ter	p.R992*	ENST00000355739	NM_000123.3	992	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	363	726	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	127	621	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0015328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	216	747	1	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112157623	112157625	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-			P-0015328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	110	574	0	ENST00000257430.4:c.1346_1348del	p.Ala449del	p.A449del	ENST00000257430	NM_000038.5	448	cCTGct/cct																																																																															
MLL3	58508	MSKCC	GRCh37	7	151891537	151891537	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	115	552	0	ENST00000262189.6:c.4495del	p.Met1499TrpfsTer64	p.M1499Wfs*64	ENST00000262189	NM_170606.2	1499	Atg/tg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0015332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	75	358	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0015332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	145	563	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137797	64137797	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	120	802	3	ENST00000334205.4:c.1898T>A	p.Phe633Tyr	p.F633Y	ENST00000334205	NM_003942.2	633	tTc/tAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42041022	42041022	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	252	637	1	ENST00000219905.7:c.5400del	p.Leu1800PhefsTer38	p.L1800Ffs*38	ENST00000219905	NM_001164273.1	1800	ttA/tt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351086	89351086	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	112	543	0	ENST00000301030.4:c.1864C>A	p.Leu622Met	p.L622M	ENST00000301030	NM_001256183.1	622	Ctg/Atg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47155384	47155384	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	161	460	0	ENST00000409792.3:c.4697C>A	p.Ala1566Asp	p.A1566D	ENST00000409792	NM_014159.6	1566	gCt/gAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685300	89685300	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	111	369	0	ENST00000371953.3:c.195C>A	p.Tyr65Ter	p.Y65*	ENST00000371953	NM_000314.4	65	taC/taA																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577330	64577333	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0015340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	191	678	0	ENST00000337652.1:c.249_252delGTCT	p.Ile85SerfsTer33	p.I85Sfs*33	ENST00000337652	NM_130803.2	83	ctGTCT/ct																																																																															
DAXX	1616	MSKCC	GRCh37	6	33286530	33286530	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	216	556	0	ENST00000374542.5:c.2213A>T	p.Asp738Val	p.D738V	ENST00000374542	NM_001141970.1	738	gAc/gTc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	364679	364679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	101	698	0	ENST00000262320.3:c.883G>A	p.Gly295Arg	p.G295R	ENST00000262320	NM_003502.3	295	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0015343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	145	840	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	552	592	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MAX	4149	MSKCC	GRCh37	14	65544630	65544630	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0015348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	211	471	0	ENST00000358664.4:c.295+1G>T		p.X99_splice	ENST00000358664	NM_002382.4	99																																																																																
DDR2	4921	MSKCC	GRCh37	1	162731136	162731136	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	230	609	2	ENST00000367921.3:c.991G>T	p.Ala331Ser	p.A331S	ENST00000367921	NM_006182.2	331	Gct/Tct																																																																															
NUF2	83540	MSKCC	GRCh37	1	163309268	163309268	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0015348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	299	486	1	ENST00000271452.3:c.606+1G>T		p.X202_splice	ENST00000271452	NM_145697.2	202																																																																																
FH	2271	MSKCC	GRCh37	1	241675391	241675391	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	160	469	1	ENST00000366560.3:c.431G>T	p.Gly144Val	p.G144V	ENST00000366560	NM_000143.3	144	gGa/gTa																																																																															
POLE	5426	MSKCC	GRCh37	12	133250217	133250217	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	262	588	0	ENST00000320574.5:c.1303G>T	p.Asp435Tyr	p.D435Y	ENST00000320574	NM_006231.2	435	Gat/Tat																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872359	35872359	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	125	567	0	ENST00000216797.5:c.544A>C	p.Asn182His	p.N182H	ENST00000216797	NM_020529.2	182	Aat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0015348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	239	526	2	ENST00000269305.4:c.673-2A>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32166845	32166845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	268	854	0	ENST00000375023.3:c.4393C>A	p.Leu1465Ile	p.L1465I	ENST00000375023	NM_004557.3	1465	Ctt/Att																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987294	2987294	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	250	598	0	ENST00000396946.4:c.135C>A	p.Tyr45Ter	p.Y45*	ENST00000396946	NM_032415.4	45	taC/taA																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069040	5069040	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	66	350	1	ENST00000381652.3:c.1345T>C	p.Tyr449His	p.Y449H	ENST00000381652	NM_004972.3	449	Tat/Cat																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805589	46805589	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	247	839	0	ENST00000290295.7:c.367C>G	p.Arg123Gly	p.R123G	ENST00000290295	NM_006361.5	123	Cgc/Ggc																																																																															
MLL3	58508	MSKCC	GRCh37	7	151846011	151846011	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs183426496		P-0015349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	80	566	0	ENST00000262189.6:c.13001G>A	p.Arg4334Gln	p.R4334Q	ENST00000262189	NM_170606.2	4334	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105824	27105851	+	frameshift_variant	Frame_Shift_Del	DEL	TTCCAGTAAAGATCGTACAGAAGAATGA	TTCCAGTAAAGATCGTACAGAAGAATGA	-			P-0015349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	84	661	0	ENST00000324856.7:c.5436_5463del	p.Pro1813HisfsTer61	p.P1813Hfs*61	ENST00000324856	NM_006015.4	1812	cTTCCAGTAAAGATCGTACAGAAGAATGAt/ct																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115862	8115863	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1619	375	728	0	ENST00000346208.3:c.1209dup	p.Ser404GlufsTer103	p.S404Efs*103	ENST00000346208		403	ctg/ctGg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056224	26056224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	89	478	0	ENST00000343677.2:c.433G>A	p.Ala145Thr	p.A145T	ENST00000343677	NM_005319.3	145	Gca/Aca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0015350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	174	493	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0015350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	50	498	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111478	8111479	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	146	404	0	ENST00000346208.3:c.966dup	p.Thr323HisfsTer29	p.T323Hfs*29	ENST00000346208		322	acc/aCcc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871039	12871040	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0015351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	34	225	1	ENST00000228872.4:c.267_268del	p.Tyr89Ter	p.Y89*	ENST00000228872	NM_004064.3	89	tAC/t																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880984	37880985	+	inframe_insertion	In_Frame_Ins	INS	-	-	TACGTGATGGCT			P-0015352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	119	468	0	ENST00000269571.5:c.2314_2325dupTACGTGATGGCT	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/TACGTGATGGCT																																																																															
MLL2	8085	MSKCC	GRCh37	12	49424162	49424163	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0015352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	60	410	0	ENST00000301067.7:c.13899_13900delinsTT	p.Val4634Leu	p.V4634L	ENST00000301067	NM_003482.3	4633	tcGGtg/tcTTtg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877422	40877422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	109	422	0	ENST00000373198.4:c.2274G>T	p.Lys758Asn	p.K758N	ENST00000373198	NM_133170.3	758	aaG/aaT																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891299	101891299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	65	569	1	ENST00000374994.4:c.260C>T	p.Ala87Val	p.A87V	ENST00000374994	NM_004612.2	87	gCa/gTa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372022	55372022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	390	254	2	ENST00000297316.4:c.712G>A	p.Ala238Thr	p.A238T	ENST00000297316	NM_022454.3	238	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	455	440	0	ENST00000269305.4:c.713G>C	p.Cys238Ser	p.C238S	ENST00000269305	NM_001126112.2	238	tGt/tCt																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274794	123274794	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	202	476	2	ENST00000358487.5:c.1124A>G	p.Tyr375Cys	p.Y375C	ENST00000358487	NM_000141.4	375	tAc/tGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0015355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	44	188	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
PARP1	142	MSKCC	GRCh37	1	226549222	226549222	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	29	246	1	ENST00000366794.5:c.2984C>A	p.Ala995Asp	p.A995D	ENST00000366794	NM_001618.3	995	gCt/gAt																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50484165	50484165	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	32	289	0	ENST00000394963.4:c.1015T>C	p.Cys339Arg	p.C339R	ENST00000394963	NM_003076.4	339	Tgt/Cgt																																																																															
CDH1	999	MSKCC	GRCh37	16	68847307	68847307	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	82	328	0	ENST00000261769.5:c.1229del	p.Glu410GlyfsTer7	p.E410Gfs*7	ENST00000261769	NM_004360.3	410	gAg/gg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118767	115118768	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	92	341	0	ENST00000257566.3:c.573dup	p.Ala192ArgfsTer35	p.A192Rfs*35	ENST00000257566	NM_016569.3	191	-/C																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0015359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	191	356	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068378	26068378	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	220	364	1	ENST00000435504.4:c.112A>T	p.Ile38Phe	p.I38F	ENST00000435504		38	Atc/Ttc																																																																															
MED12	9968	MSKCC	GRCh37	X	70356262	70356297	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCGGTTGCTGCTCTACCACACACACCTGAG	GCAGCAGCGGTTGCTGCTCTACCACACACACCTGAG	-			P-0015359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	143	318	0	ENST00000374080.3:c.5159_5194del	p.Gln1720_Arg1731del	p.Q1720_R1731del	ENST00000374080		1719	gaGCAGCAGCGGTTGCTGCTCTACCACACACACCTGAGg/gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579697	7579697	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	A			P-0015359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	146	310	0	ENST00000269305.4:c.96+3A>T		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0015361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	129	396	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0015363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	433	405	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	146	445	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259554	55259554	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	403	346	0	ENST00000275493.2:c.2612C>G	p.Ala871Gly	p.A871G	ENST00000275493	NM_005228.3	871	gCa/gGa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573496	48573496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	128	289	0	ENST00000342988.3:c.80G>A	p.Arg27Lys	p.R27K	ENST00000342988	NM_005359.5	27	aGa/aAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573504	48573504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	116	299	0	ENST00000342988.3:c.88G>A	p.Gly30Arg	p.G30R	ENST00000342988	NM_005359.5	30	Gga/Aga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575071	48575071	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	145	329	0	ENST00000342988.3:c.265G>C	p.Gly89Arg	p.G89R	ENST00000342988	NM_005359.5	89	Gga/Cga																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931791	68931791	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	215	370	0	ENST00000288368.4:c.221T>A	p.Phe74Tyr	p.F74Y	ENST00000288368	NM_024870.2	74	tTc/tAc																																																																															
NBN	4683	MSKCC	GRCh37	8	90965675	90965675	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	36	282	0	ENST00000265433.3:c.1642A>T	p.Asn548Tyr	p.N548Y	ENST00000265433	NM_002485.4	548	Aat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0015366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	239	554	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	87	456	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983066	201983066	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	374	585	3	ENST00000359651.3:c.916delC	p.Leu306CysfsTer19	p.L306Cfs*19	ENST00000359651		305	ttC/tt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11118660	11118660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	144	535	1	ENST00000344626.4:c.2084G>A	p.Ser695Asn	p.S695N	ENST00000344626	NM_003072.3	695	aGc/aAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629075	187629075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	47	462	0	ENST00000441802.2:c.1907C>T	p.Ala636Val	p.A636V	ENST00000441802	NM_005245.3	636	gCa/gTa																																																																															
MLL3	58508	MSKCC	GRCh37	7	151878620	151878620	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	37	427	0	ENST00000262189.6:c.6325T>G	p.Phe2109Val	p.F2109V	ENST00000262189	NM_170606.2	2109	Ttt/Gtt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	135	556	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	121	585	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577069	7577069	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55819519		P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	62	581	2	ENST00000269305.4:c.869G>A	p.Arg290His	p.R290H	ENST00000269305	NM_001126112.2	290	cGc/cAc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220382	1220382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	188	417	0	ENST00000326873.7:c.475C>T	p.Gln159Ter	p.Q159*	ENST00000326873	NM_000455.4	159	Cag/Tag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47677792	47677792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	138	517	1	ENST00000347630.2:c.1073C>T	p.Ser358Leu	p.S358L	ENST00000347630	NM_001007230.1	358	tCa/tTa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499363	89499363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	173	346	0	ENST00000336596.2:c.2538delC	p.Met847TrpfsTer10	p.M847Wfs*10	ENST00000336596	NM_005233.5	845	Ccc/cc																																																																															
MCL1	4170	MSKCC	GRCh37	1	150550782	150550782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	93	406	0	ENST00000369026.2:c.874G>A	p.Glu292Lys	p.E292K	ENST00000369026	NM_021960.4	292	Gaa/Aaa																																																																															
ALK	238	MSKCC	GRCh37	2	30143171	30143171	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	99	343	0	ENST00000389048.3:c.355G>T	p.Glu119Ter	p.E119*	ENST00000389048	NM_004304.4	119	Gag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115729	8115729	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	203	453	0	ENST00000346208.3:c.1075G>T	p.Glu359Ter	p.E359*	ENST00000346208		359	Gaa/Taa																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748020	72748020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	141	581	1	ENST00000357731.5:c.158G>A	p.Gly53Glu	p.G53E	ENST00000357731	NM_173808.2	53	gGg/gAg																																																																															
ATM	472	MSKCC	GRCh37	11	108196791	108196791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	101	260	0	ENST00000278616.4:c.6814G>A	p.Glu2272Lys	p.E2272K	ENST00000278616	NM_000051.3	2272	Gaa/Aaa																																																																															
MLL2	8085	MSKCC	GRCh37	12	49431596	49431596	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	126	487	0	ENST00000301067.7:c.9543G>C	p.Glu3181Asp	p.E3181D	ENST00000301067	NM_003482.3	3181	gaG/gaC																																																																															
DICER1	23405	MSKCC	GRCh37	14	95557669	95557669	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	81	647	0	ENST00000343455.3:c.5398G>C	p.Glu1800Gln	p.E1800Q	ENST00000343455	NM_177438.2	1800	Gag/Cag																																																																															
BLM	641	MSKCC	GRCh37	15	91310153	91310153	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	167	344	0	ENST00000355112.3:c.2207A>G	p.Tyr736Cys	p.Y736C	ENST00000355112	NM_000057.2	736	tAt/tGt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1632389	1632389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	159	634	0	ENST00000344749.5:c.161C>T	p.Pro54Leu	p.P54L	ENST00000344749	NM_001136139.2	54	cCc/cTc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2193688	2193688	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	211	537	0	ENST00000398665.3:c.494G>A	p.Gly165Asp	p.G165D	ENST00000398665	NM_032482.2	165	gGt/gAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602832	10602832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	253	747	0	ENST00000171111.5:c.746G>T	p.Cys249Phe	p.C249F	ENST00000171111	NM_203500.1	249	tGc/tTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123739	11123739	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	207	553	1	ENST00000344626.4:c.2389A>T	p.Met797Leu	p.M797L	ENST00000344626	NM_003072.3	797	Atg/Ttg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52613161	52613161	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	59	577	0	ENST00000394830.3:c.3367T>G	p.Phe1123Val	p.F1123V	ENST00000394830	NM_018313.4	1123	Ttt/Gtt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620498	52620498	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	184	500	0	ENST00000394830.3:c.3255G>C	p.Glu1085Asp	p.E1085D	ENST00000394830	NM_018313.4	1085	gaG/gaC																																																																															
RASA1	5921	MSKCC	GRCh37	5	86658365	86658365	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	63	189	0	ENST00000274376.6:c.1333-3C>T		p.X445_splice	ENST00000274376	NM_002890.2	445																																																																																
EZH2	2146	MSKCC	GRCh37	7	148514997	148514997	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	148	436	0	ENST00000320356.2:c.1212G>C	p.Glu404Asp	p.E404D	ENST00000320356	NM_004456.4	404	gaG/gaC																																																																															
EZH2	2146	MSKCC	GRCh37	7	148515130	148515130	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	106	378	0	ENST00000320356.2:c.1079G>C	p.Arg360Thr	p.R360T	ENST00000320356	NM_004456.4	360	aGa/aCa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069054	5069054	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	105	301	0	ENST00000381652.3:c.1359G>C	p.Leu453Phe	p.L453F	ENST00000381652	NM_004972.3	453	ttG/ttC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0015371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	18	342	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0015371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	16	407	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0015371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	35	477	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120493349	120493349	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	30	368	0	ENST00000256646.2:c.2477C>T	p.Thr826Ile	p.T826I	ENST00000256646	NM_024408.3	826	aCa/aTa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66774133	66774133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	8	598	0	ENST00000307102.5:c.609G>T	p.Glu203Asp	p.E203D	ENST00000307102	NM_002755.3	203	gaG/gaT																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10246853	10246853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	37	478	1	ENST00000340748.4:c.4552G>A	p.Glu1518Lys	p.E1518K	ENST00000340748		1518	Gag/Aag																																																																															
TEK	7010	MSKCC	GRCh37	9	27217699	27217699	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	20	419	0	ENST00000380036.4:c.3005T>G	p.Val1002Gly	p.V1002G	ENST00000380036	NM_000459.3	1002	gTg/gGg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	54	333	0	ENST00000346208.3:c.1300dup	p.His434ProfsTer73	p.H434Pfs*73	ENST00000346208		433	cac/caCc																																																																															
FYN	2534	MSKCC	GRCh37	6	112041026	112041026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	112	376	0	ENST00000368678.4:c.229C>T	p.Arg77Cys	p.R77C	ENST00000368678		77	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	55	380	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68849637	68849637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	69	602	1	ENST00000261769.5:c.1540G>T	p.Asp514Tyr	p.D514Y	ENST00000261769	NM_004360.3	514	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0015384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	71	628	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0015384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	21	365	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0015384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	109	468	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760696	59760706	+	frameshift_variant	Frame_Shift_Del	DEL	AGATGGTTTAA	AGATGGTTTAA	-			P-0015384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	51	456	0	ENST00000259008.2:c.3701_3711del	p.Phe1234SerfsTer5	p.F1234Sfs*5	ENST00000259008	NM_032043.2	1234	tTTAAACCATCT/t																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575168	48575168	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0015384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	23	293	0	ENST00000342988.3:c.362T>G	p.Leu121Ter	p.L121*	ENST00000342988	NM_005359.5	121	tTa/tGa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0015388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	192	635	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11129655	11129655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	174	630	1	ENST00000344626.4:c.2461G>A	p.Glu821Lys	p.E821K	ENST00000344626	NM_003072.3	821	Gag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138623	11138623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	131	466	0	ENST00000344626.4:c.3379G>C	p.Asp1127His	p.D1127H	ENST00000344626	NM_003072.3	1127	Gat/Cat																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873834	35873834	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	80	254	0	ENST00000216797.5:c.17A>T	p.Glu6Val	p.E6V	ENST00000216797	NM_020529.2	6	gAg/gTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982469	25982469	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	135	320	0	ENST00000435504.4:c.821del	p.Pro274ArgfsTer13	p.P274Rfs*13	ENST00000435504		274	cCg/cg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	255	577	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MYC	4609	MSKCC	GRCh37	8	128750684	128750684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	209	415	2	ENST00000377970.2:c.221C>T	p.Pro74Leu	p.P74L	ENST00000377970	NM_002467.4	74	cCg/cTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120483345	120483345	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	212	442	2	ENST00000256646.2:c.3016A>G	p.Ile1006Val	p.I1006V	ENST00000256646	NM_024408.3	1006	Att/Gtt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190320	32190320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	185	409	0	ENST00000375023.3:c.419G>A	p.Arg140His	p.R140H	ENST00000375023	NM_004557.3	140	cGc/cAc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575511	64575527	+	frameshift_variant	Frame_Shift_Del	DEL	CCCAGGGCCTGGCAGGC	CCCAGGGCCTGGCAGGC	-			P-0015400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	120	525	1	ENST00000337652.1:c.505_521del	p.Ala169SerfsTer10	p.A169Sfs*10	ENST00000337652	NM_130803.2	169	GCCTGCCAGGCCCTGGGt/t																																																																															
TSC2	7249	MSKCC	GRCh37	16	2131607	2131607	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	154	564	0	ENST00000219476.3:c.3622T>A	p.Trp1208Arg	p.W1208R	ENST00000219476	NM_000548.3	1208	Tgg/Agg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288510	33288510	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	G			P-0015400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	107	366	0	ENST00000374542.5:c.1039+3A>C		p.X347_splice	ENST00000374542	NM_001141970.1	347																																																																																
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0015403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	27	400	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991961	72991961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	23	488	1	ENST00000268489.5:c.2084C>T	p.Pro695Leu	p.P695L	ENST00000268489	NM_006885.3	695	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0015403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	18	508	0	ENST00000269305.4:c.673-1G>C		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
SETD2	29072	MSKCC	GRCh37	3	47129710	47129710	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	20	485	0	ENST00000409792.3:c.5170G>T	p.Glu1724Ter	p.E1724*	ENST00000409792	NM_014159.6	1724	Gaa/Taa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47139465	47139465	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	29	577	0	ENST00000409792.3:c.5122C>T	p.Arg1708Ter	p.R1708*	ENST00000409792	NM_014159.6	1708	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	179	493	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164505	47164505	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	150	292	0	ENST00000409792.3:c.1621C>T	p.Arg541Ter	p.R541*	ENST00000409792	NM_014159.6	541	Cga/Tga																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741413	145741413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144637135		P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	153	674	0	ENST00000428558.2:c.1090G>A	p.Val364Met	p.V364M	ENST00000428558	NM_004260.3	364	Gtg/Atg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245051	53245051	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	335	261	0	ENST00000375401.3:c.889G>T	p.Glu297Ter	p.E297*	ENST00000375401	NM_004187.3	297	Gag/Tag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174901	11174901	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	127	608	1	ENST00000361445.4:c.7133G>T	p.Arg2378Ile	p.R2378I	ENST00000361445	NM_004958.3	2378	aGa/aTa																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741639	17741639	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	94	307	0	ENST00000250003.3:c.310A>C	p.Lys104Gln	p.K104Q	ENST00000250003	NM_002478.4	104	Aag/Cag																																																																															
WT1	7490	MSKCC	GRCh37	11	32456265	32456265	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	321	661	1	ENST00000332351.3:c.627G>T	p.Gln209His	p.Q209H	ENST00000332351	NM_024426.4	209	caG/caT																																																																															
WT1	7490	MSKCC	GRCh37	11	32456585	32456585	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	45	78	0	ENST00000332351.3:c.307G>T	p.Ala103Ser	p.A103S	ENST00000332351	NM_024426.4	103	Gcg/Tcg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948545	71948545	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	295	633	0	ENST00000298229.2:c.3257G>T	p.Arg1086Leu	p.R1086L	ENST00000298229	NM_001567.3	1086	cGt/cTt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21629887	21629887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	181	598	0	ENST00000421138.2:c.907G>T	p.Asp303Tyr	p.D303Y	ENST00000421138		303	Gat/Tat																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781326	3781326	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1297	143	654	1	ENST00000262367.5:c.5039C>G	p.Ser1680Cys	p.S1680C	ENST00000262367	NM_004380.2	1680	tCc/tGc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30128072	30128072	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1309	159	652	0	ENST00000263025.4:c.1057G>C	p.Asp353His	p.D353H	ENST00000263025	NM_002746.2	353	Gat/Cat																																																																															
CIC	23152	MSKCC	GRCh37	19	42791575	42791575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	134	486	0	ENST00000575354.2:c.556G>A	p.Glu186Lys	p.E186K	ENST00000575354	NM_015125.3	186	Gag/Aag																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881462	111881462	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs199602272		P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	98	418	0	ENST00000393256.3:c.140A>G	p.Asn47Ser	p.N47S	ENST00000393256	NM_006538.4	47	aAt/aGt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098852	178098852	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	108	562	0	ENST00000397062.3:c.193G>T	p.Glu65Ter	p.E65*	ENST00000397062	NM_006164.4	65	Gag/Tag																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561118	9561118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	132	306	0	ENST00000353224.5:c.664G>T	p.Ala222Ser	p.A222S	ENST00000353224	NM_177990.2	222	Gcc/Tcc																																																																															
FYN	2534	MSKCC	GRCh37	6	112029188	112029188	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	214	549	0	ENST00000368678.4:c.380C>A	p.Thr127Asn	p.T127N	ENST00000368678		127	aCt/aAt																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137527402	137527402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	63	366	1	ENST00000367739.4:c.244C>T	p.His82Tyr	p.H82Y	ENST00000367739	NM_000416.2	82	Cat/Tat																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157150478	157150478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	197	388	0	ENST00000346085.5:c.1660G>T	p.Gly554Cys	p.G554C	ENST00000346085	NM_020732.3	554	Ggc/Tgc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2979445	2979445	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	104	610	0	ENST00000396946.4:c.802G>C	p.Glu268Gln	p.E268Q	ENST00000396946	NM_032415.4	268	Gaa/Caa																																																																															
HGF	3082	MSKCC	GRCh37	7	81336664	81336665	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	53	341	0	ENST00000222390.5:c.1557_1558insA	p.Gly520ArgfsTer26	p.G520Rfs*26	ENST00000222390	NM_000601.4	519	-/A																																																																															
MLL3	58508	MSKCC	GRCh37	7	151932963	151932963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2	24	7	0	ENST00000262189.6:c.2708G>T	p.Gly903Val	p.G903V	ENST00000262189	NM_170606.2	903	gGg/gTg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981722	70981722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	303	750	1	ENST00000276594.2:c.374G>A	p.Ser125Asn	p.S125N	ENST00000276594	NM_024504.3	125	aGc/aAc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5073697	5073697	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	159	232	1	ENST00000381652.3:c.1777-1G>T		p.X593_splice	ENST00000381652	NM_004972.3	593																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8376714	8376714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	141	463	1	ENST00000356435.5:c.4399C>A	p.Gln1467Lys	p.Q1467K	ENST00000356435		1467	Cag/Aag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399926	139399927	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	310	767	2	ENST00000277541.6:c.4421_4422delinsCT	p.Trp1474Ser	p.W1474S	ENST00000277541	NM_017617.3	1474	tGG/tCT																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139802670	139802670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	161	370	0	ENST00000247668.2:c.515G>A	p.Gly172Glu	p.G172E	ENST00000247668	NM_021138.3	172	gGa/gAa																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317466	1317466	+	downstream_gene_variant	3'Flank	SNP	G	G	T			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	374	675	0				ENST00000381566																																																																																		
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	44	465	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577561	7577561	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	79	488	0	ENST00000269305.4:c.720T>G	p.Ser240Arg	p.S240R	ENST00000269305	NM_001126112.2	240	agT/agG																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061249	38061249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	77	646	0	ENST00000250448.2:c.740A>G	p.His247Arg	p.H247R	ENST00000250448	NM_004496.3	247	cAc/cGc																																																																															
NF1	4763	MSKCC	GRCh37	17	29559208	29559208	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	24	355	0	ENST00000358273.4:c.3314+1G>A		p.X1105_splice	ENST00000358273	NM_001042492.2	1105																																																																																
NF1	4763	MSKCC	GRCh37	17	29667586	29667598	+	frameshift_variant	Frame_Shift_Del	DEL	AACTTGTATTCAG	AACTTGTATTCAG	-			P-0015406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	74	664	0	ENST00000358273.4:c.6985_6997del	p.Asn2329GlnfsTer13	p.N2329Qfs*13	ENST00000358273	NM_001042492.2	2329	AACTTGTATTCAGca/ca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	189	336	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764146326		P-0015408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	71	652	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0015408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	77	337	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013690	12013690	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0015408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	117	344	0	ENST00000353533.5:c.634-2A>T		p.X212_splice	ENST00000353533	NM_003010.3	212																																																																																
EIF4A2	1974	MSKCC	GRCh37	3	186503769	186503769	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	232	381	0	ENST00000323963.5:c.446A>G	p.Gln149Arg	p.Q149R	ENST00000323963		149	cAg/cGg																																																																															
SYK	6850	MSKCC	GRCh37	9	93607827	93607827	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	31	457	1	ENST00000375746.1:c.529G>T	p.Glu177Ter	p.E177*	ENST00000375746	NM_001174167.1	177	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0015411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	74	437	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	54	393	0	ENST00000263967.3:c.316G>C	p.Gly106Arg	p.G106R	ENST00000263967	NM_006218.2	106	Ggc/Cgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0015411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	56	363	2	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967270	134967270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	71	490	0	ENST00000398015.3:c.2609G>A	p.Arg870Gln	p.R870Q	ENST00000398015	NM_004441.4	870	cGg/cAg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944259	81944259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	133	480	0	ENST00000359376.3:c.1868G>A	p.Arg623His	p.R623H	ENST00000359376	NM_002661.3	623	cGc/cAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508260	106508260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	56	233	0	ENST00000359195.3:c.254C>T	p.Ala85Val	p.A85V	ENST00000359195	NM_002649.2	85	gCg/gTg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247496	71247496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	92	420	1	ENST00000318789.4:c.37G>A	p.Gly13Ser	p.G13S	ENST00000318789	NM_032682.5	13	Ggt/Agt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63816897	63816897	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	39	215	0	ENST00000279873.7:c.868G>T	p.Ala290Ser	p.A290S	ENST00000279873	NM_032199.2	290	Gcc/Tcc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346979	89346979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	58	262	0	ENST00000301030.4:c.5971C>T	p.Pro1991Ser	p.P1991S	ENST00000301030	NM_001256183.1	1991	Cca/Tca																																																																															
APC	324	MSKCC	GRCh37	5	112175458	112175464	+	frameshift_variant	Frame_Shift_Del	DEL	TGTCAGT	TGTCAGT	-			P-0015411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	96	275	0	ENST00000257430.4:c.4168_4174del	p.Val1390HisfsTer23	p.V1390Hfs*23	ENST00000257430	NM_000038.5	1389	tcTGTCAGT/tc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	90	455	2	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518111	8518111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	325	420	2	ENST00000356435.5:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000356435		427	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112173949	112173949	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	86	429	0	ENST00000257430.4:c.2658G>C	p.Gln886His	p.Q886H	ENST00000257430	NM_000038.5	886	caG/caC																																																																															
SESN1	27244	MSKCC	GRCh37	6	109315704	109315704	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	132	675	1	ENST00000436639.2:c.1081G>T	p.Glu361Ter	p.E361*	ENST00000436639	NM_014454.2	361	Gaa/Taa																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46531788	46531788	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	87	477	0	ENST00000262741.5:c.559C>T	p.Gln187Ter	p.Q187*	ENST00000262741	NM_003629.3	187	Cag/Tag																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78444604	78444604	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	322	453	0	ENST00000370768.2:c.85G>T	p.Asp29Tyr	p.D29Y	ENST00000370768	NM_003902.3	29	Gac/Tac																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458600	120458600	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	139	574	0	ENST00000256646.2:c.6745G>T	p.Val2249Phe	p.V2249F	ENST00000256646	NM_024408.3	2249	Gtc/Ttc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120469223	120469223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	145	528	0	ENST00000256646.2:c.3904G>A	p.Glu1302Lys	p.E1302K	ENST00000256646	NM_024408.3	1302	Gaa/Aaa																																																																															
TET1	80312	MSKCC	GRCh37	10	70451167	70451167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	405	590	0	ENST00000373644.4:c.6007G>A	p.Asp2003Asn	p.D2003N	ENST00000373644	NM_030625.2	2003	Gat/Aat																																																																															
LMO1	4004	MSKCC	GRCh37	11	8248579	8248579	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	174	697	1	ENST00000335790.3:c.308G>T	p.Arg103Leu	p.R103L	ENST00000335790	NM_002315.2	103	cGg/cTg																																																																															
MLL2	8085	MSKCC	GRCh37	12	49443932	49443932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1385	163	721	0	ENST00000301067.7:c.3439G>A	p.Glu1147Lys	p.E1147K	ENST00000301067	NM_003482.3	1147	Gaa/Aaa																																																																															
MLL2	8085	MSKCC	GRCh37	12	49448533	49448533	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	112	480	0	ENST00000301067.7:c.178G>A	p.Gly60Arg	p.G60R	ENST00000301067	NM_003482.3	60	Ggg/Agg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109813	115109813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1571	173	772	2	ENST00000257566.3:c.2065G>T	p.Gly689Cys	p.G689C	ENST00000257566	NM_016569.3	689	Ggc/Tgc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109923	115109923	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1525	172	754	0	ENST00000257566.3:c.1955G>T	p.Gly652Val	p.G652V	ENST00000257566	NM_016569.3	652	gGc/gTc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120900	115120900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	99	522	1	ENST00000257566.3:c.106C>A	p.His36Asn	p.H36N	ENST00000257566	NM_016569.3	36	Cac/Aac																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514615	103514615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	181	374	0	ENST00000355739.4:c.1116G>T	p.Arg372Ser	p.R372S	ENST00000355739	NM_000123.3	372	agG/agT																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576193	88576193	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	138	517	0	ENST00000360948.2:c.1480C>G	p.Leu494Val	p.L494V	ENST00000360948	NM_001012338.2	494	Ctg/Gtg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347132	347132	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1289	245	901	1	ENST00000262320.3:c.1879G>T	p.Glu627Ter	p.E627*	ENST00000262320	NM_003502.3	627	Gag/Tag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81972460	81972460	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	231	620	0	ENST00000359376.3:c.3253G>C	p.Val1085Leu	p.V1085L	ENST00000359376	NM_002661.3	1085	Gta/Cta																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81990420	81990420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	447	659	0	ENST00000359376.3:c.3691C>A	p.Leu1231Met	p.L1231M	ENST00000359376	NM_002661.3	1231	Ctg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	511	539	0	ENST00000269305.4:c.375+1delG		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37868255	37868255	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1250	148	611	0	ENST00000269571.5:c.976G>C	p.Asp326His	p.D326H	ENST00000269571		326	Gat/Cat																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533718	63533718	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	122	436	0	ENST00000307078.5:c.1436C>G	p.Ser479Cys	p.S479C	ENST00000307078	NM_004655.3	479	tCc/tGc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599996	10599997	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	584	825	1	ENST00000171111.5:c.1579_1580delinsTA	p.Gly527Tyr	p.G527Y	ENST00000171111	NM_203500.1	527	GGt/TAt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198288654	198288654	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	145	615	0	ENST00000335508.6:c.73C>G	p.Leu25Val	p.L25V	ENST00000335508	NM_012433.2	25	Ctt/Gtt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259223	36259223	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	189	652	0	ENST00000300305.3:c.268G>T	p.Val90Leu	p.V90L	ENST00000300305		90	Gtg/Ttg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524711	187524711	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	452	725	0	ENST00000441802.2:c.10969G>T	p.Gly3657Cys	p.G3657C	ENST00000441802	NM_005245.3	3657	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112173481	112173481	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	78	368	0	ENST00000257430.4:c.2190G>T	p.Met730Ile	p.M730I	ENST00000257430	NM_000038.5	730	atG/atT																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149447876	149447876	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	397	710	2	ENST00000286301.3:c.1528C>A	p.Pro510Thr	p.P510T	ENST00000286301	NM_005211.3	510	Ccg/Acg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508526	106508526	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	313	225	0	ENST00000359195.3:c.520G>T	p.Glu174Ter	p.E174*	ENST00000359195	NM_002649.2	174	Gag/Tag																																																																															
RXRA	6256	MSKCC	GRCh37	9	137309036	137309036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1381	186	865	2	ENST00000481739.1:c.643C>T	p.Arg215Trp	p.R215W	ENST00000481739	NM_002957.4	215	Cgg/Tgg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400172	139400173	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	177	740	0	ENST00000277541.6:c.4175dup	p.Gly1394ArgfsTer11	p.G1394Rfs*11	ENST00000277541	NM_017617.3	1392	ctg/ctTg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942027	44942027	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	79	173	0	ENST00000377967.4:c.3277G>T	p.Asp1093Tyr	p.D1093Y	ENST00000377967	NM_021140.2	1093	Gac/Tac																																																																															
AR	367	MSKCC	GRCh37	X	66765229	66765229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	72	140	0	ENST00000374690.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000374690	NM_000044.3	81	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	54	722	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	38	264	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120131	70120132	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0015417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	29	215	0	ENST00000245479.2:c.1134_1135dupGG	p.Ala379GlyfsTer5	p.A379Gfs*5	ENST00000245479	NM_000346.3	378	cag/caGGg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256762	16256762	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	356	500	0	ENST00000375759.3:c.4027C>T	p.Gln1343Ter	p.Q1343*	ENST00000375759	NM_015001.2	1343	Cag/Tag																																																																															
CDH1	999	MSKCC	GRCh37	16	68857335	68857335	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	153	322	0	ENST00000261769.5:c.1971del	p.Leu658Ter	p.L658*	ENST00000261769	NM_004360.3	657	gCc/gc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0015429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	483	1085	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115427	115115427	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	337	774	0	ENST00000257566.3:c.899C>G	p.Ala300Gly	p.A300G	ENST00000257566	NM_016569.3	300	gCa/gGa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120804	115120805	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	231	696	0	ENST00000257566.3:c.201dup	p.Leu68IlefsTer43	p.L68Ifs*43	ENST00000257566	NM_016569.3	67	-/A																																																																															
EZH2	2146	MSKCC	GRCh37	7	148544272	148544272	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0015429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	84	528	0	ENST00000320356.2:c.117+2T>C		p.X39_splice	ENST00000320356	NM_004456.4	39																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	151	375	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029454	16029454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	128	209	0	ENST00000268712.3:c.1576G>A	p.Glu526Lys	p.E526K	ENST00000268712	NM_006311.3	526	Gaa/Aaa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243472	46243472	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	127	340	0	ENST00000334344.6:c.1825C>T	p.Gln609Ter	p.Q609*	ENST00000334344	NM_152641.2	609	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602584	10602584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	131	300	0	ENST00000171111.5:c.994G>T	p.Gly332Cys	p.G332C	ENST00000171111	NM_203500.1	332	Ggc/Tgc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102207675	102207675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	85	177	0	ENST00000263464.3:c.1657G>A	p.Glu553Lys	p.E553K	ENST00000263464	NM_001165.4	553	Gaa/Aaa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220368	1220379	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCAGGTACTTCT	GCAGGTACTTCT	-			P-0015431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	69	362	0	ENST00000326873.7:c.465-3_473del		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
PRKCI	5584	MSKCC	GRCh37	3	170011239	170011239	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	167	390	0	ENST00000295797.4:c.1360G>C	p.Asp454His	p.D454H	ENST00000295797	NM_002740.5	454	Gat/Cat																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247344	153247344	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	124	285	0	ENST00000281708.4:c.1458G>A	p.Trp486Ter	p.W486*	ENST00000281708	NM_033632.3	486	tgG/tgA																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249373	153249373	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	105	280	0	ENST00000281708.4:c.1405C>G	p.Leu469Val	p.L469V	ENST00000281708	NM_033632.3	469	Ctt/Gtt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576837	67576837	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0015431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	74	178	0	ENST00000274335.5:c.916+3A>G		p.X306_splice	ENST00000274335		306																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	165	414	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223541	53223541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	97	285	0	ENST00000375401.3:c.3818C>T	p.Pro1273Leu	p.P1273L	ENST00000375401	NM_004187.3	1273	cCc/cTc																																																																															
ATM	472	MSKCC	GRCh37	11	108143566	108143566	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	83	260	0	ENST00000278616.4:c.3271G>T	p.Glu1091Ter	p.E1091*	ENST00000278616	NM_000051.3	1091	Gag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108198462	108198462	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	82	284	0	ENST00000278616.4:c.7066A>T	p.Ile2356Phe	p.I2356F	ENST00000278616	NM_000051.3	2356	Atc/Ttc																																																																															
STK11	6794	MSKCC	GRCh37	19	1219345	1219345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	201	499	0	ENST00000326873.7:c.397del	p.Val133CysfsTer28	p.V133Cfs*28	ENST00000326873	NM_000455.4	133	Gtg/tg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521690	89521690	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	52	321	0	ENST00000336596.2:c.2767G>C	p.Val923Leu	p.V923L	ENST00000336596	NM_005233.5	923	Gtc/Ctc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953092	2953092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	156	463	0	ENST00000396946.4:c.2848C>A	p.Pro950Thr	p.P950T	ENST00000396946	NM_032415.4	950	Cct/Act																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039816	47039816	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0015436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	224	602	0	ENST00000329236.7:c.927-2A>T		p.X309_splice	ENST00000329236	NM_001204466.1	309																																																																																
MED12	9968	MSKCC	GRCh37	X	70361745	70361745	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	183	520	0	ENST00000374080.3:c.6421G>T	p.Gly2141Trp	p.G2141W	ENST00000374080		2141	Ggg/Tgg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89725047	89725047	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0015442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	48	251	0	ENST00000371953.3:c.1030A>T	p.Lys344Ter	p.K344*	ENST00000371953	NM_000314.4	344	Aag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0015442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	502	708	1	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	93	339	0	ENST00000397062.3:c.92G>C	p.Gly31Ala	p.G31A	ENST00000397062	NM_006164.4	31	gGa/gCa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176015335	176015335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	87	338	0	ENST00000367669.3:c.1403C>A	p.Thr468Asn	p.T468N	ENST00000367669	NM_022457.5	468	aCc/aAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624252	89624252	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	36	257	0	ENST00000371953.3:c.26T>A	p.Val9Asp	p.V9D	ENST00000371953	NM_000314.4	9	gTt/gAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133218273	133218273	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	212	594	0	ENST00000320574.5:c.5338G>T	p.Ala1780Ser	p.A1780S	ENST00000320574	NM_006231.2	1780	Gcc/Tcc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28578251	28578251	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	65	466	0	ENST00000241453.7:c.2920C>G	p.Pro974Ala	p.P974A	ENST00000241453	NM_004119.2	974	Cct/Gct																																																																															
RB1	5925	MSKCC	GRCh37	13	48916734	48916734	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0015442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	77	310	0	ENST00000267163.4:c.266del		p.X89_splice	ENST00000267163	NM_000321.2	89																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212289021	212289021	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	120	406	0	ENST00000342788.4:c.2725A>T	p.Thr909Ser	p.T909S	ENST00000342788	NM_005235.2	909	Act/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0015443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	641	663	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745623	162745623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	53	359	0	ENST00000367921.3:c.2038C>T	p.Arg680Cys	p.R680C	ENST00000367921	NM_006182.2	680	Cgc/Tgc																																																																															
MLL2	8085	MSKCC	GRCh37	12	49443793	49443833	+	frameshift_variant	Frame_Shift_Del	DEL	GCCACCGGTGCACGTGGCTCTTCCTGTTCTTCACATGGTGA	GCCACCGGTGCACGTGGCTCTTCCTGTTCTTCACATGGTGA	-			P-0015443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	182	637	0	ENST00000301067.7:c.3538_3578del	p.Ser1180ProfsTer13	p.S1180Pfs*13	ENST00000301067	NM_003482.3	1180	TCACCATGTGAAGAACAGGAAGAGCCACGTGCACCGGTGGCc/c																																																																															
ATR	545	MSKCC	GRCh37	3	142268337	142268337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	61	303	0	ENST00000350721.4:c.3155C>T	p.Ala1052Val	p.A1052V	ENST00000350721	NM_001184.3	1052	gCc/gTc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94068113	94068113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	91	238	0	ENST00000369303.4:c.849C>A	p.Phe283Leu	p.F283L	ENST00000369303	NM_004440.3	283	ttC/ttA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0015445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	220	619	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775669	9775669	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	42	636	0	ENST00000377346.4:c.212C>G	p.Thr71Ser	p.T71S	ENST00000377346	NM_005026.3	71	aCc/aGc																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505012	186505012	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	101	353	0	ENST00000323963.5:c.868A>G	p.Thr290Ala	p.T290A	ENST00000323963		290	Act/Gct																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0015448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	81	629	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	190	753	0	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021081	31021111	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGCAGGCTGGGTTTGACCAAAGAAGAGTCA	TTGCAGGCTGGGTTTGACCAAAGAAGAGTCA	-			P-0015448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	82	437	0	ENST00000375687.4:c.1086_1116del		p.X362_splice	ENST00000375687	NM_015338.5	362																																																																																
STK11	6794	MSKCC	GRCh37	19	1220717	1220717	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0015459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	107	618	0	ENST00000326873.7:c.734+1G>C		p.X245_splice	ENST00000326873	NM_000455.4	245																																																																																
CDKN2C	1031	MSKCC	GRCh37	1	51439875	51439875	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	49	455	0	ENST00000262662.1:c.440A>G	p.Tyr147Cys	p.Y147C	ENST00000262662		147	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577107	7577118	+	inframe_deletion	In_Frame_Del	DEL	ACAGGCACAAAC	ACAGGCACAAAC	-			P-0015459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1305	219	889	0	ENST00000269305.4:c.820_831del	p.Val274_Cys277del	p.V274_C277del	ENST00000269305	NM_001126112.2	274	GTTTGTGCCTGT/-																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45854892	45854892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1516	131	1048	1	ENST00000391945.4:c.2278C>T	p.Leu760Phe	p.L760F	ENST00000391945	NM_000400.3	760	Ctc/Ttc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57480526	57480526	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	113	508	0	ENST00000371085.3:c.521G>C	p.Cys174Ser	p.C174S	ENST00000371085	NM_000516.4	174	tGt/tCt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205019	128205019	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	105	722	0	ENST00000341105.2:c.422A>C	p.Tyr141Ser	p.Y141S	ENST00000341105	NM_032638.4	141	tAc/tCc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022297	31022297	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	265	452	0	ENST00000375687.4:c.1782C>A	p.Cys594Ter	p.C594*	ENST00000375687	NM_015338.5	594	tgC/tgA																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988555	36988555	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	227	936	1	ENST00000354822.5:c.98T>G	p.Met33Arg	p.M33R	ENST00000354822	NM_001079668.2	33	aTg/aGg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3831260	3831260	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	366	462	3	ENST00000262367.5:c.1621C>T	p.Gln541Ter	p.Q541*	ENST00000262367	NM_004380.2	541	Cag/Tag																																																																															
ABL1	25	MSKCC	GRCh37	9	133738225	133738225	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	308	498	0	ENST00000318560.5:c.625C>A	p.Leu209Ile	p.L209I	ENST00000318560	NM_005157.4	209	Ctc/Atc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0015464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	86	584	2	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207153	1207155	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs1414068445		P-0015464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	344	1113	3	ENST00000326873.7:c.250_252del	p.Lys84del	p.K84del	ENST00000326873	NM_000455.4	81	AAG/-																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589552	69589552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	46	201	2	ENST00000168712.1:c.301G>A	p.Asp101Asn	p.D101N	ENST00000168712	NM_002007.2	101	Gac/Aac																																																																															
MLL	4297	MSKCC	GRCh37	11	118344714	118344714	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	30	552	0	ENST00000534358.1:c.2840del	p.Ser947LeufsTer2	p.S947Lfs*2	ENST00000534358	NM_005933.3	947	tCt/tt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99459334	99459335	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTACCGGCACAATTACTGCTCCAAAGG			P-0015464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	92	483	0	ENST00000268035.6:c.1972_1996+2dup		p.L658_G667dup	ENST00000268035	NM_000875.3	658	ctt/ctTTACCGGCACAATTACTGCTCCAAAGGt																																																																															
MLL4	9757	MSKCC	GRCh37	19	36218425	36218425	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	252	626	2	ENST00000222270.7:c.4204C>T	p.Arg1402Ter	p.R1402*	ENST00000222270	NM_014727.1	1402	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5211749	5211749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	215	562	2	ENST00000357368.4:c.5086C>T	p.Arg1696Cys	p.R1696C	ENST00000357368	NM_002850.3	1696	Cgc/Tgc																																																																															
MLL2	8085	MSKCC	GRCh37	12	49425298	49425304	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGGTA	CCAGGTA	-			P-0015468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	192	596	0	ENST00000301067.7:c.13184_13190del	p.Val4395GlyfsTer6	p.V4395Gfs*6	ENST00000301067	NM_003482.3	4395	gTACCTGGg/gg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349373	89349386	+	frameshift_variant	Frame_Shift_Del	DEL	CGTCGGCAGCCCCT	CGTCGGCAGCCCCT	-			P-0015468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	209	681	0	ENST00000301030.4:c.3564_3577del	p.Ala1190GlufsTer9	p.A1190Efs*9	ENST00000301030	NM_001256183.1	1188	cgAGGGGCTGCCGACGcg/cgcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579363	7579364	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	225	627	0	ENST00000269305.4:c.323dupG	p.Arg110ProfsTer39	p.R110Pfs*39	ENST00000269305	NM_001126112.2	108	ggt/ggGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29664601	29664601	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0015468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	319	371	0	ENST00000358273.4:c.6642+1G>T		p.X2214_splice	ENST00000358273	NM_001042492.2	2214																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40757429	40757429	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	191	523	0	ENST00000373198.4:c.2869C>G	p.Pro957Ala	p.P957A	ENST00000373198	NM_133170.3	957	Ccg/Gcg																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519643	137519643	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	128	279	0	ENST00000367739.4:c.995C>G	p.Pro332Arg	p.P332R	ENST00000367739	NM_000416.2	332	cCa/cGa																																																																															
MLL3	58508	MSKCC	GRCh37	7	151864416	151864416	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	124	345	0	ENST00000262189.6:c.9565C>T	p.Gln3189Ter	p.Q3189*	ENST00000262189	NM_170606.2	3189	Cag/Tag																																																																															
MLL3	58508	MSKCC	GRCh37	7	151879274	151879274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	152	364	0	ENST00000262189.6:c.5671C>A	p.Pro1891Thr	p.P1891T	ENST00000262189	NM_170606.2	1891	Cca/Aca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0015470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	141	358	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
APC	324	MSKCC	GRCh37	5	112174043	112174043	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	277	332	1	ENST00000257430.4:c.2752G>T	p.Glu918Ter	p.E918*	ENST00000257430	NM_000038.5	918	Gag/Tag																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646393	23646393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	210	491	0	ENST00000261584.4:c.1474G>T	p.Gly492Trp	p.G492W	ENST00000261584	NM_024675.3	492	Ggg/Tgg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508473	106508473	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1370328855		P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	42	192	1	ENST00000359195.3:c.467C>T	p.Ala156Val	p.A156V	ENST00000359195	NM_002649.2	156	gCg/gTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468281	120468282	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	171	472	0	ENST00000256646.2:c.4157_4158delinsTT	p.Gly1386Val	p.G1386V	ENST00000256646	NM_024408.3	1386	gGG/gTT																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111017	193111017	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	327	234	0	ENST00000367435.3:c.550G>C	p.Ala184Pro	p.A184P	ENST00000367435	NM_024529.4	184	Gca/Cca																																																																															
PARP1	142	MSKCC	GRCh37	1	226590011	226590011	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	487	549	0	ENST00000366794.5:c.190A>T	p.Ile64Phe	p.I64F	ENST00000366794	NM_001618.3	64	Atc/Ttc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998510	100998510	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	247	492	0	ENST00000325455.5:c.1292C>A	p.Pro431Gln	p.P431Q	ENST00000325455	NM_001202474.3	431	cCa/cAa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107968	30107968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1135	227	485	0	ENST00000331968.5:c.839G>T	p.Arg280Leu	p.R280L	ENST00000331968	NM_002742.2	280	cGg/cTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845591	72845591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	136	525	1	ENST00000268489.5:c.3749C>T	p.Pro1250Leu	p.P1250L	ENST00000268489	NM_006885.3	1250	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	183	514	1	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
NF1	4763	MSKCC	GRCh37	17	29554291	29554304	+	frameshift_variant	Frame_Shift_Del	DEL	CACTGCAGGAAACA	CACTGCAGGAAACA	-			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	225	486	0	ENST00000358273.4:c.2308_2321del	p.Thr770Ter	p.T770*	ENST00000358273	NM_001042492.2	769	ccCACTGCAGGAAACAct/ccct																																																																															
NF1	4763	MSKCC	GRCh37	17	29554309	29554309	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	326	518	0	ENST00000358273.4:c.2325G>T	p.Glu775Asp	p.E775D	ENST00000358273	NM_001042492.2	775	gaG/gaT																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618400	37618400	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	85	354	0	ENST00000447079.4:c.76G>T	p.Gly26Ter	p.G26*	ENST00000447079	NM_015083.1	26	Gga/Tga																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4101030	4101030	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	68	396	0	ENST00000262948.5:c.692G>T	p.Arg231Leu	p.R231L	ENST00000262948	NM_030662.3	231	cGc/cTc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355565	15355565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	224	509	0	ENST00000263377.2:c.2167C>T	p.Pro723Ser	p.P723S	ENST00000263377	NM_058243.2	723	Ccg/Tcg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375450	15375450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	98	512	0	ENST00000263377.2:c.977G>T	p.Arg326Leu	p.R326L	ENST00000263377	NM_058243.2	326	cGg/cTg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25471001	25471001	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	144	471	0	ENST00000264709.3:c.760G>T	p.Ala254Ser	p.A254S	ENST00000264709	NM_175629.2	254	Gca/Tca																																																																															
ALK	238	MSKCC	GRCh37	2	29519809	29519809	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	114	510	0	ENST00000389048.3:c.1762G>T	p.Glu588Ter	p.E588*	ENST00000389048	NM_004304.4	588	Gaa/Taa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212286769	212286769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	300	408	0	ENST00000342788.4:c.2927G>A	p.Arg976Lys	p.R976K	ENST00000342788	NM_005235.2	976	aGg/aAg																																																																															
INHA	3623	MSKCC	GRCh37	2	220439509	220439509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	151	434	0	ENST00000243786.2:c.362C>G	p.Thr121Arg	p.T121R	ENST00000243786	NM_002191.3	121	aCa/aGa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546669	9546669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	136	321	0	ENST00000353224.5:c.1353C>A	p.Asn451Lys	p.N451K	ENST00000353224	NM_177990.2	451	aaC/aaA																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643916	52643916	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	110	439	0	ENST00000394830.3:c.1980G>C	p.Gln660His	p.Q660H	ENST00000394830	NM_018313.4	660	caG/caC																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664910	138664910	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	56	313	0	ENST00000330315.3:c.655C>G	p.Gln219Glu	p.Q219E	ENST00000330315	NM_023067.3	219	Cag/Gag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629442	187629442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	192	561	0	ENST00000441802.2:c.1540C>T	p.His514Tyr	p.H514Y	ENST00000441802	NM_005245.3	514	Cat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112176902	112176902	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	313	369	1	ENST00000257430.4:c.5611G>T	p.Asp1871Tyr	p.D1871Y	ENST00000257430	NM_000038.5	1871	Gat/Tat																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449626	149449626	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	69	454	0	ENST00000286301.3:c.1320G>T	p.Arg440Ser	p.R440S	ENST00000286301	NM_005211.3	440	agG/agT																																																																															
PMS2	5395	MSKCC	GRCh37	7	6038812	6038812	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	426	595	0	ENST00000265849.7:c.632G>C	p.Arg211Pro	p.R211P	ENST00000265849	NM_000535.5	211	cGa/cCa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509802	106509802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	408	536	1	ENST00000359195.3:c.1796G>C	p.Gly599Ala	p.G599A	ENST00000359195	NM_002649.2	599	gGa/gCa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931786	68931786	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	169	360	0	ENST00000288368.4:c.216G>T	p.Met72Ile	p.M72I	ENST00000288368	NM_024870.2	72	atG/atT																																																																															
AGO2	27161	MSKCC	GRCh37	8	141566022	141566022	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	58	371	1	ENST00000220592.5:c.1242G>T	p.Gln414His	p.Q414H	ENST00000220592	NM_012154.3	414	caG/caT																																																																															
AR	367	MSKCC	GRCh37	X	66766439	66766439	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	48	273	0	ENST00000374690.3:c.1451C>G	p.Thr484Ser	p.T484S	ENST00000374690	NM_000044.3	484	aCt/aGt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123229236	123229236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	174	351	0	ENST00000218089.9:c.3720C>A	p.Asn1240Lys	p.N1240K	ENST00000218089	NM_001042749.1	1240	aaC/aaA																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152860046	152860046	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	208	469	0	ENST00000406277.2:c.382A>T	p.Arg128Ter	p.R128*	ENST00000406277	NM_152274.4	128	Aga/Tga																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0015473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	242	235	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0015473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	135	234	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088699	27088699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1355	89	349	0	ENST00000324856.7:c.2308G>A	p.Ala770Thr	p.A770T	ENST00000324856	NM_006015.4	770	Gcc/Acc																																																																															
RB1	5925	MSKCC	GRCh37	13	49047495	49047495	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0015473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	41	142	0	ENST00000267163.4:c.2490-1G>C		p.X830_splice	ENST00000267163	NM_000321.2	830																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3778355	3778355	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	129	239	0	ENST00000262367.5:c.6693C>A	p.Phe2231Leu	p.F2231L	ENST00000262367	NM_004380.2	2231	ttC/ttA																																																																															
CBFB	865	MSKCC	GRCh37	16	67100610	67100610	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	90	228	0	ENST00000412916.2:c.308T>G	p.Leu103Arg	p.L103R	ENST00000412916		103	cTg/cGg																																																																															
CDH1	999	MSKCC	GRCh37	16	68772310	68772311	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	154	255	0	ENST00000261769.5:c.160dup	p.Arg54LysfsTer5	p.R54Kfs*5	ENST00000261769	NM_004360.3	53	-/A																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732530	74732530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	35	58	0	ENST00000359995.5:c.379C>T	p.Arg127Cys	p.R127C	ENST00000359995	NM_001195427.1	127	Cgc/Tgc																																																																															
BCL6	604	MSKCC	GRCh37	3	187444668	187444668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	96	146	0	ENST00000232014.4:c.1559G>A	p.Cys520Tyr	p.C520Y	ENST00000232014	NM_001130845.1	520	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112179431	112179431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	97	255	0	ENST00000257430.4:c.8140C>T	p.Arg2714Cys	p.R2714C	ENST00000257430	NM_000038.5	2714	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0015474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	68	178	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65335141	65335141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	212	322	0	ENST00000342505.4:c.500T>C	p.Val167Ala	p.V167A	ENST00000342505	NM_002227.2	167	gTg/gCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0015475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	63	250	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0015477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	54	311	2	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	61	320	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0015477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	74	262	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0015477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	32	250	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0015477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	17	147	1	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	65	411	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741838	17741838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	21	140	0	ENST00000250003.3:c.509C>T	p.Ala170Val	p.A170V	ENST00000250003	NM_002478.4	170	gCg/gTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822709	72822709	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	49	451	0	ENST00000268489.5:c.9466A>G	p.Ser3156Gly	p.S3156G	ENST00000268489	NM_006885.3	3156	Agc/Ggc																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858244	27858244	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	58	382	0	ENST00000359303.2:c.327C>A	p.Asn109Lys	p.N109K	ENST00000359303	NM_003535.2	109	aaC/aaA																																																																															
ATRX	546	MSKCC	GRCh37	X	76920182	76920182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	34	406	0	ENST00000373344.5:c.3895G>T	p.Gly1299Trp	p.G1299W	ENST00000373344	NM_000489.3	1299	Ggg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0015492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	118	475	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0015492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	15	276	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
BIRC3	330	MSKCC	GRCh37	11	102196028	102196028	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	34	169	0	ENST00000263464.3:c.788T>G	p.Phe263Cys	p.F263C	ENST00000263464	NM_001165.4	263	tTt/tGt																																																																															
MLL	4297	MSKCC	GRCh37	11	118392851	118392851	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	50	372	0	ENST00000534358.1:c.11883C>G	p.Asn3961Lys	p.N3961K	ENST00000534358	NM_005933.3	3961	aaC/aaG																																																																															
TSC2	7249	MSKCC	GRCh37	16	2137939	2137939	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	101	462	0	ENST00000219476.3:c.5065A>G	p.Lys1689Glu	p.K1689E	ENST00000219476	NM_000548.3	1689	Aaa/Gaa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220652	1220653	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	97	599	0	ENST00000326873.7:c.672dup	p.Ala225CysfsTer41	p.A225Cfs*41	ENST00000326873	NM_000455.4	224	att/aTtt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162475122	162475122	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0015492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	62	328	0	ENST00000366898.1:c.618+1G>T		p.X206_splice	ENST00000366898	NM_004562.2	206																																																																																
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	130	429	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974907	15974907	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	33	282	0	ENST00000268712.3:c.3968C>G	p.Pro1323Arg	p.P1323R	ENST00000268712	NM_006311.3	1323	cCt/cGt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371838	55371838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	21	138	0	ENST00000297316.4:c.528G>A	p.Met176Ile	p.M176I	ENST00000297316	NM_022454.3	176	atG/atA																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0015524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	174	286	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0015524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	311	557	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281200	15281200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	366	817	1	ENST00000263388.2:c.5056G>T	p.Val1686Leu	p.V1686L	ENST00000263388	NM_000435.2	1686	Gtg/Ttg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546603	9546603	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	99	445	0	ENST00000353224.5:c.1419A>C	p.Lys473Asn	p.K473N	ENST00000353224	NM_177990.2	473	aaA/aaC																																																																															
NBN	4683	MSKCC	GRCh37	8	90965878	90965878	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0015524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	61	266	0	ENST00000265433.3:c.1439C>G	p.Ser480Ter	p.S480*	ENST00000265433	NM_002485.4	480	tCa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	109	335	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112760241	112760241	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	110	326	1	ENST00000369452.4:c.910G>T	p.Ala304Ser	p.A304S	ENST00000369452	NM_007373.3	304	Gca/Tca																																																																															
STK11	6794	MSKCC	GRCh37	19	1220505	1220505	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	102	431	0	ENST00000326873.7:c.597+1G>A		p.X199_splice	ENST00000326873	NM_000455.4	199																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10610239	10610252	+	protein_altering_variant	In_Frame_Del	DEL	GTTCATGACGTGGA	GTTCATGACGTGGA	AC			P-0015529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	119	513	2	ENST00000171111.5:c.458_471delinsGT	p.Leu153_Asn157delinsArg	p.L153_N157delinsR	ENST00000171111	NM_203500.1	153	cTCCACGTCATGAAC/cGT																																																																															
CIC	23152	MSKCC	GRCh37	19	42796483	42796483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	132	586	2	ENST00000575354.2:c.3040G>T	p.Ala1014Ser	p.A1014S	ENST00000575354	NM_015125.3	1014	Gcg/Tcg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225379354	225379355	+	missense_variant	Missense_Mutation	DNP	CT	CT	GG			P-0015529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	103	478	0	ENST00000264414.4:c.513_514delinsCC	p.Arg171_Glu172delinsSerGln	p.R171_E172delinsSQ	ENST00000264414	NM_003590.4	171	agAGag/agCCag																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345744	152345744	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	35	137	0	ENST00000359321.1:c.826G>T	p.Gly276Trp	p.G276W	ENST00000359321	NM_005431.1	276	Ggg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0015534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	32	391	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0015534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1134	126	527	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112170862	112170862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	40	290	0	ENST00000257430.4:c.1958G>A	p.Arg653Lys	p.R653K	ENST00000257430	NM_000038.5	653	aGg/aAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099968	27099968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	60	403	0	ENST00000324856.7:c.3847G>A	p.Gly1283Ser	p.G1283S	ENST00000324856	NM_006015.4	1283	Ggt/Agt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	133	704	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	105	443	2	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	297	729	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	36	333	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100171	157100172	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	11	83	0	ENST00000346085.5:c.1114dupC	p.Arg372ProfsTer163	p.R372Pfs*163	ENST00000346085	NM_020732.3	370	tcc/tCcc																																																																															
AXL	558	MSKCC	GRCh37	19	41743932	41743933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778012871		P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	154	1037	3	ENST00000301178.4:c.874dup	p.His292ProfsTer47	p.H292Pfs*47	ENST00000301178	NM_021913.4	289	-/C																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5240314	5240314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	68	927	1	ENST00000357368.4:c.1600G>A	p.Glu534Lys	p.E534K	ENST00000357368	NM_002850.3	534	Gag/Aag																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	55	335	3	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15308382	15308383	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	126	895	0	ENST00000263388.2:c.125dup	p.Cys43LeufsTer32	p.C43Lfs*32	ENST00000263388	NM_000435.2	42	cct/ccCt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279325	18279325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	138	674	1	ENST00000222254.8:c.1777G>A	p.Glu593Lys	p.E593K	ENST00000222254	NM_005027.3	593	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	134	668	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968260	2968260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	198	886	1	ENST00000396946.4:c.1726C>T	p.Arg576Cys	p.R576C	ENST00000396946	NM_032415.4	576	Cgc/Tgc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	76	621	2	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	132	449	3	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	184	867	3	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31376726	31376726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	92	445	0	ENST00000328111.2:c.721G>A	p.Ala241Thr	p.A241T	ENST00000328111	NM_006892.3	241	Gcc/Acc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806180	1806181	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775260779		P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	132	869	3	ENST00000260795.2:c.1206dup	p.Lys403GlnfsTer93	p.K403Qfs*93	ENST00000260795		400	agc/agCc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713896	30713899	+	frameshift_variant	Frame_Shift_Del	DEL	TCTG	TCTG	-			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	114	639	0	ENST00000359013.4:c.1301_1304delCTGT	p.Ser434TrpfsTer21	p.S434Wfs*21	ENST00000359013	NM_001024847.2	432	acTCTG/ac																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154404	2154404	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	213	960	0	ENST00000434045.2:c.524G>A	p.Trp175Ter	p.W175*	ENST00000434045	NM_001127598.1	175	tGg/tAg																																																																															
MITF	4286	MSKCC	GRCh37	3	70014295	70014295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	151	752	1	ENST00000352241.4:c.1459G>A	p.Val487Ile	p.V487I	ENST00000352241	NM_198159.2	487	Gtc/Atc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023376	27023376	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	20	237	0	ENST00000324856.7:c.482T>C	p.Val161Ala	p.V161A	ENST00000324856	NM_006015.4	161	gTc/gCc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622415	1622415	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	129	735	0	ENST00000344749.5:c.550-1G>T		p.X184_splice	ENST00000344749	NM_001136139.2	184																																																																																
MLL3	58508	MSKCC	GRCh37	7	151836879	151836879	+	splice_region_variant,intron_variant	Splice_Region	DEL	A	A	-			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	140	573	3	ENST00000262189.6:c.14344-3delT		p.X4782_splice	ENST00000262189	NM_170606.2	4782																																																																																
HLA-A	3105	MSKCC	GRCh37	6	29911141	29911141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	33	410	0	ENST00000376809.5:c.440A>G	p.Tyr147Cys	p.Y147C	ENST00000376809	NM_002116.7	147	tAc/tGc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	204	925	9	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	147	785	5	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45795090	45795090	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	106	559	0	ENST00000372115.3:c.1496T>C	p.Val499Ala	p.V499A	ENST00000372115	NM_001048171.1	499	gTg/gCg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852298	63852298	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	132	676	1	ENST00000279873.7:c.3076A>G	p.Lys1026Glu	p.K1026E	ENST00000279873	NM_032199.2	1026	Aaa/Gaa																																																																															
PGR	5241	MSKCC	GRCh37	11	100998685	100998685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	224	897	0	ENST00000325455.5:c.1117G>A	p.Ala373Thr	p.A373T	ENST00000325455	NM_001202474.3	373	Gcg/Acg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244140	46244140	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	49	570	0	ENST00000334344.6:c.2234A>G	p.Gln745Arg	p.Q745R	ENST00000334344	NM_152641.2	745	cAg/cGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426774	49426774	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1334139538		P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	41	435	6	ENST00000301067.7:c.11714A>T	p.Gln3905Leu	p.Q3905L	ENST00000301067	NM_003482.3	3905	cAg/cTg																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68292277	68292277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	115	414	0	ENST00000487270.1:c.181G>A	p.Ala61Thr	p.A61T	ENST00000487270	NM_133509.3	61	Gcc/Acc																																																																															
MGA	23269	MSKCC	GRCh37	15	42052611	42052611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	116	541	0	ENST00000219905.7:c.7282C>T	p.His2428Tyr	p.H2428Y	ENST00000219905	NM_001164273.1	2428	Cac/Tac																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43708596	43708596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	129	689	1	ENST00000382044.4:c.4700G>T	p.Arg1567Met	p.R1567M	ENST00000382044	NM_001141980.1	1567	aGg/aTg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627339	37627339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	177	858	2	ENST00000447079.4:c.1254G>T	p.Lys418Asn	p.K418N	ENST00000447079	NM_015083.1	418	aaG/aaT																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627745	37627745	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	160	938	0	ENST00000447079.4:c.1660T>A	p.Leu554Met	p.L554M	ENST00000447079	NM_015083.1	554	Ttg/Atg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37882063	37882064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	144	642	0	ENST00000269571.5:c.2835dup	p.Ile946HisfsTer5	p.I946Hfs*5	ENST00000269571		943	-/C																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40371789	40371789	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	44	195	0	ENST00000293328.3:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000293328	NM_012448.3	208	Cag/Tag																																																																															
STAT3	6774	MSKCC	GRCh37	17	40478132	40478132	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	139	594	1	ENST00000264657.5:c.1365+2T>C		p.X455_splice	ENST00000264657	NM_139276.2	455																																																																																
H3F3B	3021	MSKCC	GRCh37	17	73774731	73774731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	46	176	0	ENST00000254810.4:c.356C>T	p.Thr119Ile	p.T119I	ENST00000254810	NM_005324.3	119	aCc/aTc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78617550	78617550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	106	475	0	ENST00000306801.3:c.288G>T	p.Gln96His	p.Q96H	ENST00000306801	NM_020761.2	96	caG/caT																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262102	10262102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	170	771	3	ENST00000340748.4:c.2189G>A	p.Arg730His	p.R730H	ENST00000340748		730	cGc/cAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11113837	11113837	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	117	581	1	ENST00000344626.4:c.1943+2T>C		p.X648_splice	ENST00000344626	NM_003072.3	648																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15303035	15303035	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777257132		P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	181	961	0	ENST00000263388.2:c.415G>A	p.Asp139Asn	p.D139N	ENST00000263388	NM_000435.2	139	Gat/Aat																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955064	17955064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	186	865	0	ENST00000458235.1:c.163G>A	p.Val55Met	p.V55M	ENST00000458235	NM_000215.3	55	Gtg/Atg																																																																															
CASP8	841	MSKCC	GRCh37	2	202136247	202136247	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	112	609	0	ENST00000358485.4:c.491T>A	p.Leu164His	p.L164H	ENST00000358485	NM_001080125.1	164	cTc/cAc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659953	227659954	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	156	860	0	ENST00000305123.5:c.3501_3502del	p.Cys1167TrpfsTer11	p.C1167Wfs*11	ENST00000305123	NM_005544.2	1167	tgTGgg/tggg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662572	227662572	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	105	515	0	ENST00000305123.5:c.883A>G	p.Ser295Gly	p.S295G	ENST00000305123	NM_005544.2	295	Agc/Ggc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264262	46264262	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	80	454	0	ENST00000371998.3:c.1309A>G	p.Ser437Gly	p.S437G	ENST00000371998		437	Agt/Ggt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967255	134967255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	129	669	1	ENST00000398015.3:c.2594G>T	p.Arg865Leu	p.R865L	ENST00000398015	NM_004441.4	865	cGg/cTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106158392	106158392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	81	373	1	ENST00000380013.4:c.3293C>T	p.Ala1098Val	p.A1098V	ENST00000380013	NM_001127208.2	1098	gCt/gTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524650	187524650	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	185	862	0	ENST00000441802.2:c.11030A>G	p.Asp3677Gly	p.D3677G	ENST00000441802	NM_005245.3	3677	gAc/gGc																																																																															
MSH3	4437	MSKCC	GRCh37	5	80040392	80040392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	129	608	0	ENST00000265081.6:c.1721G>A	p.Arg574Gln	p.R574Q	ENST00000265081	NM_002439.4	574	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112177307	112177307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	117	554	3	ENST00000257430.4:c.6016G>T	p.Gly2006Cys	p.G2006C	ENST00000257430	NM_000038.5	2006	Ggc/Tgc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131927072	131927072	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	96	581	0	ENST00000265335.6:c.1609C>T	p.Gln537Ter	p.Q537*	ENST00000265335		537	Caa/Taa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056125	26056125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	121	515	0	ENST00000343677.2:c.532A>G	p.Lys178Glu	p.K178E	ENST00000343677	NM_005319.3	178	Aag/Gag																																																																															
AGO2	27161	MSKCC	GRCh37	8	141561474	141561474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	234	589	0	ENST00000220592.5:c.1331C>T	p.Thr444Met	p.T444M	ENST00000220592	NM_012154.3	444	aCg/aTg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249756	110249756	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	131	823	0	ENST00000374672.4:c.919C>A	p.Leu307Met	p.L307M	ENST00000374672	NM_004235.4	307	Ctg/Atg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135801087	135801087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	111	577	0	ENST00000298552.3:c.250G>A	p.Ala84Thr	p.A84T	ENST00000298552	NM_001162426.1	84	Gcc/Acc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841177	15841177	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	102	531	0	ENST00000307771.7:c.1261C>T	p.Arg421Ter	p.R421*	ENST00000307771	NM_005089.3	421	Cga/Tga																																																																															
AR	367	MSKCC	GRCh37	X	66765097	66765097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	117	709	1	ENST00000374690.3:c.109C>A	p.Pro37Thr	p.P37T	ENST00000374690	NM_000044.3	37	Ccg/Acg																																																																															
GNA11	2767	MSKCC	GRCh37	19	3114979	3114991	+	frameshift_variant	Frame_Shift_Del	DEL	TACCTGCCCACCC	TACCTGCCCACCC	GACGTGCA			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	178	778	2	ENST00000078429.4:c.514_526delinsGACGTGCA	p.Tyr172AspfsTer48	p.Y172Dfs*48	ENST00000078429	NM_002067.2	172	TACCTGCCCACCCag/GACGTGCAag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	40	455	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577555	7577556	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGGAA			P-0015541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	53	513	0	ENST00000269305.4:c.720_725dup	p.Ser241_Cys242dup	p.S241_C242dup	ENST00000269305	NM_001126112.2	241	tgc/tgTTCCTGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	388	420	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118737	115118738	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	436	511	0	ENST00000257566.3:c.603_604insA	p.Val202SerfsTer25	p.V202Sfs*25	ENST00000257566	NM_016569.3	201	-/A																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162494	47162494	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	147	329	0	ENST00000409792.3:c.3632A>T	p.Asp1211Val	p.D1211V	ENST00000409792	NM_014159.6	1211	gAt/gTt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001914	29001914	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	57	596	3	ENST00000282397.4:c.1251C>A	p.Asn417Lys	p.N417K	ENST00000282397	NM_002019.4	417	aaC/aaA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061228	38061228	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	279	509	0	ENST00000250448.2:c.761T>G	p.Phe254Cys	p.F254C	ENST00000250448	NM_004496.3	254	tTc/tGc																																																																															
ERF	2077	MSKCC	GRCh37	19	42754692	42754692	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	40	306	0	ENST00000222329.4:c.48C>A	p.Tyr16Ter	p.Y16*	ENST00000222329	NM_006494.2	16	taC/taA																																																																															
JAK1	3716	MSKCC	GRCh37	1	65323345	65323345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	257	305	0	ENST00000342505.4:c.1452G>T	p.Lys484Asn	p.K484N	ENST00000342505	NM_002227.2	484	aaG/aaT																																																																															
TET1	80312	MSKCC	GRCh37	10	70406723	70406723	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	355	370	0	ENST00000373644.4:c.4237A>G	p.Ile1413Val	p.I1413V	ENST00000373644	NM_030625.2	1413	Ata/Gta																																																																															
WT1	7490	MSKCC	GRCh37	11	32449571	32449571	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	473	440	0	ENST00000332351.3:c.803A>T	p.Tyr268Phe	p.Y268F	ENST00000332351	NM_024426.4	268	tAt/tTt																																																																															
CCND1	595	MSKCC	GRCh37	11	69462867	69462867	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	455	449	0	ENST00000227507.2:c.680A>G	p.Tyr227Cys	p.Y227C	ENST00000227507	NM_053056.2	227	tAc/tGc																																																																															
CCND1	595	MSKCC	GRCh37	11	69462875	69462875	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	442	458	0	ENST00000227507.2:c.688A>G	p.Thr230Ala	p.T230A	ENST00000227507	NM_053056.2	230	Aca/Gca																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939543	71939543	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	620	488	0	ENST00000298229.2:c.397+1G>C		p.X133_splice	ENST00000298229	NM_001567.3	133																																																																																
SETD8	387893	MSKCC	GRCh37	12	123888138	123888138	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	233	247	0	ENST00000330479.4:c.616A>C	p.Ile206Leu	p.I206L	ENST00000330479	NM_020382.3	206	Ata/Cta																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251742	212251742	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	199	208	0	ENST00000342788.4:c.3317G>T	p.Cys1106Phe	p.C1106F	ENST00000342788	NM_005235.2	1106	tGc/tTc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143044447	143044447	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	165	275	0	ENST00000262992.4:c.2015A>G	p.Tyr672Cys	p.Y672C	ENST00000262992	NM_001101669.1	672	tAc/tGc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157150479	157150479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	318	308	1	ENST00000346085.5:c.1661G>A	p.Gly554Asp	p.G554D	ENST00000346085	NM_020732.3	554	gGc/gAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523600	106523600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	195	330	0	ENST00000359195.3:c.2752G>A	p.Glu918Lys	p.E918K	ENST00000359195	NM_002649.2	918	Gaa/Aaa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396479	139396479	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	497	483	0	ENST00000277541.6:c.5446G>T	p.Glu1816Ter	p.E1816*	ENST00000277541	NM_017617.3	1816	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577068	7577069	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	T			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	1024	461	0	ENST00000269305.4:c.869_870delinsA	p.Arg290GlnfsTer55	p.R290Qfs*55	ENST00000269305	NM_001126112.2	290	cGC/cA																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	53	358	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68849567	68849570	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0015551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	223	733	0	ENST00000261769.5:c.1471_1474del	p.Lys491GlufsTer30	p.K491Efs*30	ENST00000261769	NM_004360.3	490	gaAAAG/ga																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38952378	38952378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	27	320	0	ENST00000357387.3:c.3047C>T	p.Ser1016Leu	p.S1016L	ENST00000357387	NM_152756.3	1016	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	37	614	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577567	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	58	608	0	ENST00000269305.4:c.714dup	p.Asn239Ter	p.N239*	ENST00000269305	NM_001126112.2	238	-/T																																																																															
XPO1	7514	MSKCC	GRCh37	2	61726984	61726984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	41	567	0	ENST00000401558.2:c.454G>T	p.Asp152Tyr	p.D152Y	ENST00000401558	NM_003400.3	152	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	19	596	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	51	501	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602662	10602662	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	158	665	0	ENST00000171111.5:c.916G>T	p.Glu306Ter	p.E306*	ENST00000171111	NM_203500.1	306	Gag/Tag																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186503787	186503789	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0015556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	135	497	4	ENST00000323963.5:c.470_472del	p.Val157del	p.V157del	ENST00000323963		155	aTTGtt/att																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056429	26056429	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	49	256	0	ENST00000343677.2:c.228del	p.Asn76LysfsTer13	p.N76Kfs*13	ENST00000343677	NM_005319.3	76	aaC/aa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023100	150023100	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	92	549	1	ENST00000253339.5:c.163A>T	p.Ser55Cys	p.S55C	ENST00000253339		55	Agt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	222	778	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	50	613	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604796	48604798	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	45	559	0	ENST00000342988.3:c.1619_1621delTTC	p.Leu540del	p.L540del	ENST00000342988	NM_005359.5	540	CTT/-																																																																															
NF1	4763	MSKCC	GRCh37	17	29528489	29528489	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	391	830	0	ENST00000358273.4:c.1246C>T	p.Arg416Ter	p.R416*	ENST00000358273	NM_001042492.2	416	Cga/Tga																																																																															
JUN	3725	MSKCC	GRCh37	1	59248409	59248409	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	135	407	0	ENST00000371222.2:c.334G>C	p.Glu112Gln	p.E112Q	ENST00000371222	NM_002228.3	112	Gag/Cag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11300363	11300363	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	122	425	0	ENST00000361445.4:c.1783G>C	p.Glu595Gln	p.E595Q	ENST00000361445	NM_004958.3	595	Gaa/Caa																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643647	38643647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	212	620	1	ENST00000299084.4:c.1117G>A	p.Glu373Lys	p.E373K	ENST00000299084	NM_152594.2	373	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68845638	68845673	+	inframe_deletion	In_Frame_Del	DEL	CCTACAATGCCGCCATCGCTTACACCATCCTCAGCC	CCTACAATGCCGCCATCGCTTACACCATCCTCAGCC	-			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	358	929	0	ENST00000261769.5:c.884_919del	p.Thr295_Gln307delinsLys	p.T295_Q307delinsK	ENST00000261769	NM_004360.3	295	aCCTACAATGCCGCCATCGCTTACACCATCCTCAGCCaa/aaa																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217683	7217683	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	356	599	0	ENST00000380728.2:c.244G>T	p.Glu82Ter	p.E82*	ENST00000380728		82	Gag/Tag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016634	12016634	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	319	452	0	ENST00000353533.5:c.770C>G	p.Ser257Cys	p.S257C	ENST00000353533	NM_003010.3	257	tCt/tGt																																																																															
CIC	23152	MSKCC	GRCh37	19	42797279	42797279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	278	869	0	ENST00000575354.2:c.3641G>A	p.Arg1214Gln	p.R1214Q	ENST00000575354	NM_015125.3	1214	cGa/cAa																																																																															
MITF	4286	MSKCC	GRCh37	3	69990420	69990420	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	153	508	0	ENST00000352241.4:c.700G>C	p.Glu234Gln	p.E234Q	ENST00000352241	NM_198159.2	234	Gaa/Caa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967167	134967167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	153	427	1	ENST00000398015.3:c.2506G>A	p.Ala836Thr	p.A836T	ENST00000398015	NM_004441.4	836	Gcc/Acc																																																																															
TET2	54790	MSKCC	GRCh37	4	106155793	106155793	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	201	518	0	ENST00000380013.4:c.694C>A	p.Gln232Lys	p.Q232K	ENST00000380013	NM_001127208.2	232	Caa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175091	112175091	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	66	232	0	ENST00000257430.4:c.3800C>G	p.Thr1267Ser	p.T1267S	ENST00000257430	NM_000038.5	1267	aCt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0015566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	547	801	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0015566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	157	235	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
KDR	3791	MSKCC	GRCh37	4	55958789	55958789	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	323	649	0	ENST00000263923.4:c.3064C>T	p.Arg1022Ter	p.R1022*	ENST00000263923	NM_002253.2	1022	Cga/Tga																																																																															
WT1	7490	MSKCC	GRCh37	11	32450139	32450139	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	188	580	0	ENST00000332351.3:c.673A>G	p.Thr225Ala	p.T225A	ENST00000332351	NM_024426.4	225	Acg/Gcg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046524	30046524	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	90	556	0	ENST00000331968.5:c.2659C>G	p.Pro887Ala	p.P887A	ENST00000331968	NM_002742.2	887	Cca/Gca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944554	40944554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	1056	587	0	ENST00000373198.4:c.1948G>A	p.Val650Met	p.V650M	ENST00000373198	NM_133170.3	650	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112173306	112173316	+	frameshift_variant	Frame_Shift_Del	DEL	ATAGTTTGACA	ATAGTTTGACA	-			P-0015566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	90	288	0	ENST00000257430.4:c.2020_2030del	p.Leu674GlnfsTer2	p.L674Qfs*2	ENST00000257430	NM_000038.5	672	cATAGTTTGACA/c																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871060	12871070	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGTGCCTGC	AAGGTGCCTGC	-			P-0015568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	112	307	0	ENST00000228872.4:c.295_305delTGCAAGGTGCC	p.Cys99GlyfsTer22	p.C99Gfs*22	ENST00000228872	NM_004064.3	96	aAAGGTGCCTGC/a																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115854	8115855	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	74	671	0	ENST00000346208.3:c.1200_1201insC	p.Ser401LeufsTer106	p.S401Lfs*106	ENST00000346208		400	-/C																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575562	64575588	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATTTGGTGCCTGTGGAAGGGGGAGGT	AATTTGGTGCCTGTGGAAGGGGGAGGT	-			P-0015568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	12	478	0	ENST00000337652.1:c.461-17_470del		p.X154_splice	ENST00000337652	NM_130803.2	154																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517202		P-0015569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	221	474	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914004	32914004	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	58	533	0	ENST00000380152.3:c.5512G>C	p.Glu1838Gln	p.E1838Q	ENST00000380152		1838	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	196	737	3	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	105	363	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	174	693	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117746743	117746743	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	111	572	0	ENST00000368508.3:c.77A>G	p.Gln26Arg	p.Q26R	ENST00000368508	NM_002944.2	26	cAg/cGg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	176	494	8	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs864622237		P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	173	680	0	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	110	403	0	ENST00000342505.4:c.1016delA	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																															
ERG	2078	MSKCC	GRCh37	21	39764347	39764347	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	193	672	3	ENST00000288319.7:c.765del	p.Arg256GlyfsTer35	p.R256Gfs*35	ENST00000288319	NM_182918.3	255	ccC/cc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24159109	24159109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	99	445	0	ENST00000263121.7:c.781C>T	p.Arg261Cys	p.R261C	ENST00000263121	NM_003073.3	261	Cgc/Tgc																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139563029	139563029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	236	794	1	ENST00000308874.7:c.101G>A	p.Arg34Gln	p.R34Q	ENST00000308874		34	cGg/cAg																																																																															
ARAF	369	MSKCC	GRCh37	X	47424734	47424734	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	39	303	0	ENST00000377045.4:c.547delC	p.Gln183ArgfsTer109	p.Q183Rfs*109	ENST00000377045	NM_001654.4	181	aCc/ac																																																																															
CENPA	1058	MSKCC	GRCh37	2	27015052	27015052	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	160	612	0	ENST00000335756.4:c.154C>T	p.Arg52Ter	p.R52*	ENST00000335756	NM_001809.3	52	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89693003	89693003	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	88	502	0	ENST00000371953.3:c.491del	p.Lys164ArgfsTer3	p.K164Rfs*3	ENST00000371953	NM_000314.4	163	Aaa/aa																																																																															
CBFB	865	MSKCC	GRCh37	16	67063358	67063359	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	131	525	0	ENST00000412916.2:c.54dupT	p.Arg19Ter	p.R19*	ENST00000412916		16	-/T																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907421	32907421	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	76	396	1	ENST00000380152.3:c.1813delA	p.Ile605TyrfsTer9	p.I605Yfs*9	ENST00000380152		602	ggA/gg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135079	11135079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	278	894	0	ENST00000344626.4:c.3046G>A	p.Val1016Met	p.V1016M	ENST00000344626	NM_003072.3	1016	Gtg/Atg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	86	317	2	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99179952	99179952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	212	786	2	ENST00000074304.5:c.1895C>T	p.Pro632Leu	p.P632L	ENST00000074304	NM_001134224.1	632	cCg/cTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	204	848	7	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780673	9780673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	222	826	0	ENST00000377346.4:c.1475T>C	p.Leu492Ser	p.L492S	ENST00000377346	NM_005026.3	492	tTg/tCg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11298651	11298651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	167	696	1	ENST00000361445.4:c.1810C>T	p.Arg604Cys	p.R604C	ENST00000361445	NM_004958.3	604	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101421	27101421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	194	678	1	ENST00000324856.7:c.4703C>T	p.Pro1568Leu	p.P1568L	ENST00000324856	NM_006015.4	1568	cCt/cTt																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699214	117699214	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	108	461	0	ENST00000369458.3:c.427C>A	p.Leu143Ile	p.L143I	ENST00000369458	NM_024626.3	143	Ctt/Att																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612801	228612801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	180	572	1	ENST00000366696.1:c.226G>A	p.Ala76Thr	p.A76T	ENST00000366696	NM_003493.2	76	Gct/Act																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741762	17741762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	200	742	0	ENST00000250003.3:c.433C>T	p.Pro145Ser	p.P145S	ENST00000250003	NM_002478.4	145	Ccc/Tcc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	430249	430249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	109	470	1	ENST00000399788.2:c.2453G>A	p.Arg818Gln	p.R818Q	ENST00000399788	NM_001042603.1	818	cGg/cAg																																																																															
RAD52	5893	MSKCC	GRCh37	12	1023602	1023602	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	118	520	0	ENST00000358495.3:c.962T>C	p.Leu321Ser	p.L321S	ENST00000358495	NM_134424.2	321	tTa/tCa																																																																															
ETV6	2120	MSKCC	GRCh37	12	11905496	11905496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	100	298	1	ENST00000396373.4:c.146G>A	p.Arg49His	p.R49H	ENST00000396373	NM_001987.4	49	cGc/cAc																																																																															
MLL2	8085	MSKCC	GRCh37	12	49418457	49418460	+	frameshift_variant	Frame_Shift_Del	DEL	AATA	AATA	-			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	175	634	0	ENST00000301067.7:c.15953_15956del	p.Leu5318SerfsTer14	p.L5318Sfs*14	ENST00000301067	NM_003482.3	5318	tTATTc/tc																																																																															
MLL2	8085	MSKCC	GRCh37	12	49427869	49427869	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	188	600	0	ENST00000301067.7:c.10721T>A	p.Ile3574Asn	p.I3574N	ENST00000301067	NM_003482.3	3574	aTc/aAc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56494970	56494970	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	183	615	0	ENST00000267101.3:c.3327G>T	p.Gln1109His	p.Q1109H	ENST00000267101	NM_001982.3	1109	caG/caT																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066796	30066796	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201010570		P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	161	586	0	ENST00000331968.5:c.2335G>A	p.Gly779Ser	p.G779S	ENST00000331968	NM_002742.2	779	Ggc/Agc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3790545	3790545	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	185	512	0	ENST00000262367.5:c.3988C>T	p.Gln1330Ter	p.Q1330*	ENST00000262367	NM_004380.2	1330	Cag/Tag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349313	89349313	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	295	1041	0	ENST00000301030.4:c.3637T>C	p.Ser1213Pro	p.S1213P	ENST00000301030	NM_001256183.1	1213	Tcc/Ccc																																																																															
NF1	4763	MSKCC	GRCh37	17	29533268	29533268	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	93	341	0	ENST00000358273.4:c.1271A>T	p.Asp424Val	p.D424V	ENST00000358273	NM_001042492.2	424	gAt/gTt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37680930	37680930	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	126	364	0	ENST00000447079.4:c.3103delC	p.His1035ThrfsTer22	p.H1035Tfs*22	ENST00000447079	NM_015083.1	1033	ctC/ct																																																																															
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	157	754	7	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47613709	47613709	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	99	435	0	ENST00000263735.4:c.904-2A>G		p.X302_splice	ENST00000263735	NM_002354.2	302																																																																																
BCL2L11	10018	MSKCC	GRCh37	2	111881688	111881688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	175	757	0	ENST00000393256.3:c.366G>T	p.Gln122His	p.Q122H	ENST00000393256	NM_006538.4	122	caG/caT																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116173	209116173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	112	532	0	ENST00000345146.2:c.103G>A	p.Val35Met	p.V35M	ENST00000345146	NM_005896.2	35	Gtg/Atg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31390273	31390273	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	189	660	0	ENST00000328111.2:c.2228A>C	p.Asn743Thr	p.N743T	ENST00000328111	NM_006892.3	743	aAc/aCc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39657718	39657718	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	150	464	0	ENST00000361337.2:c.11A>T	p.Asp4Val	p.D4V	ENST00000361337	NM_003286.2	4	gAc/gTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733354	40733354	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	106	409	0	ENST00000373198.4:c.3452A>G	p.Gln1151Arg	p.Q1151R	ENST00000373198	NM_133170.3	1151	cAa/cGa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171739	36171739	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	122	433	0	ENST00000300305.3:c.826T>C	p.Ser276Pro	p.S276P	ENST00000300305		276	Tcc/Ccc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37045957	37045957	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	106	573	0	ENST00000231790.2:c.372T>A	p.Cys124Ter	p.C124*	ENST00000231790	NM_000249.3	124	tgT/tgA																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277966	41277966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	104	417	0	ENST00000349496.5:c.1930C>T	p.Leu644Phe	p.L644F	ENST00000349496	NM_001904.3	644	Ctt/Ttt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205020	128205021	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	119	636	0	ENST00000341105.2:c.420_421del	p.Tyr141ProfsTer43	p.Y141Pfs*43	ENST00000341105	NM_032638.4	140	gtGTac/gtac																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967186	134967186	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200311306		P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	160	429	0	ENST00000398015.3:c.2525G>A	p.Arg842Gln	p.R842Q	ENST00000398015	NM_004441.4	842	cGg/cAg																																																																															
KDR	3791	MSKCC	GRCh37	4	55981086	55981086	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	114	683	0	ENST00000263923.4:c.613A>G	p.Asn205Asp	p.N205D	ENST00000263923	NM_002253.2	205	Aat/Gat																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189932	66189932	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	86	313	2	ENST00000273854.3:c.3014T>C	p.Leu1005Ser	p.L1005S	ENST00000273854	NM_004439.5	1005	tTg/tCg																																																																															
TERT	7015	MSKCC	GRCh37	5	1260674	1260674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	248	686	0	ENST00000310581.5:c.2885G>A	p.Arg962His	p.R962H	ENST00000310581	NM_198253.2	962	cGc/cAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160577	56160577	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	90	399	0	ENST00000399503.3:c.851T>A	p.Ile284Asn	p.I284N	ENST00000399503	NM_005921.1	284	aTc/aAc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149495351	149495351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	156	665	0	ENST00000261799.4:c.3296C>T	p.Ala1099Val	p.A1099V	ENST00000261799	NM_002609.3	1099	gCg/gTg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818746	32818746	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	174	699	1	ENST00000354258.4:c.1205C>A	p.Pro402His	p.P402H	ENST00000354258	NM_000593.5	402	cCc/cAc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38287325	38287325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	39	750	5	ENST00000425967.3:c.332G>A	p.Arg111His	p.R111H	ENST00000425967	NM_001174067.1	111	cGc/cAc																																																																															
MYC	4609	MSKCC	GRCh37	8	128752916	128752916	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	209	427	0	ENST00000377970.2:c.1077C>G	p.Ser359Arg	p.S359R	ENST00000377970	NM_002467.4	359	agC/agG																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738639	145738639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	223	602	4	ENST00000428558.2:c.2425G>A	p.Gly809Arg	p.G809R	ENST00000428558	NM_004260.3	809	Ggg/Agg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8471063	8471063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	88	511	0	ENST00000356435.5:c.3436C>T	p.Pro1146Ser	p.P1146S	ENST00000356435		1146	Cct/Tct																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	151	639	3	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399278	139399278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	254	832	2	ENST00000277541.6:c.4865G>A	p.Arg1622His	p.R1622H	ENST00000277541	NM_017617.3	1622	cGc/cAc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222438	53222438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	240	434	0	ENST00000375401.3:c.4394G>A	p.Arg1465Gln	p.R1465Q	ENST00000375401	NM_004187.3	1465	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578192	7578192	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	49	818	0	ENST00000269305.4:c.657delC	p.Tyr220MetfsTer27	p.Y220Mfs*27	ENST00000269305	NM_001126112.2	219	ccC/cc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061198	38061199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0015572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	181	395	0	ENST00000250448.2:c.789_790dup	p.Lys264ArgfsTer58	p.K264Rfs*58	ENST00000250448	NM_004496.3	264	aag/aGAag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916926	178916937	+	inframe_deletion	In_Frame_Del	DEL	GTAGGCAACCGT	GTAGGCAACCGT	-			P-0015572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	179	514	0	ENST00000263967.3:c.314_325del	p.Val105_Arg108del	p.V105_R108del	ENST00000263967	NM_006218.2	105	GTAGGCAACCGT/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	101	466	0	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																																																															
MGA	23269	MSKCC	GRCh37	15	41988276	41988277	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	75	420	0	ENST00000219905.7:c.1069dup	p.Ile357AsnfsTer6	p.I357Nfs*6	ENST00000219905	NM_001164273.1	356	-/A																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602611	10602611	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	90	548	0	ENST00000171111.5:c.967A>G	p.Lys323Glu	p.K323E	ENST00000171111	NM_203500.1	323	Aag/Gag																																																																															
STK11	6794	MSKCC	GRCh37	19	1207203	1207203	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0015578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	168	514	0	ENST00000326873.7:c.290+1G>T		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																																
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	221	433	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs483352822		P-0015578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1409	83	435	1	ENST00000368323.3:c.270G>A	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atA																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729154	66729154	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	142	450	0	ENST00000307102.5:c.362G>C	p.Cys121Ser	p.C121S	ENST00000307102	NM_002755.3	121	tGc/tCc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11294234	11294234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1154	103	509	0	ENST00000361445.4:c.2297G>T	p.Arg766Leu	p.R766L	ENST00000361445	NM_004958.3	766	cGa/cTa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145614	11145614	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1482864360		P-0015578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	53	468	0	ENST00000358026.2:c.3976G>A	p.Glu1326Lys	p.E1326K	ENST00000358026	NM_001128849.1	1326	Gag/Aag																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140154	50140154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	169	408	0	ENST00000246792.3:c.271G>A	p.Gly91Arg	p.G91R	ENST00000246792	NM_006270.3	91	Ggg/Agg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119666168	119666168	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	77	332	0	ENST00000316626.5:c.313G>T	p.Asp105Tyr	p.D105Y	ENST00000316626		105	Gat/Tat																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670672	134670672	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0015578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	108	399	0	ENST00000398015.3:c.583A>T	p.Lys195Ter	p.K195*	ENST00000398015	NM_004441.4	195	Aag/Tag																																																																															
TERT	7015	MSKCC	GRCh37	5	1254616	1254616	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	280	311	0	ENST00000310581.5:c.3162G>T	p.Met1054Ile	p.M1054I	ENST00000310581	NM_198253.2	1054	atG/atT																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729691	41729691	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	103	372	0	ENST00000242208.4:c.838G>T	p.Gly280Ter	p.G280*	ENST00000242208	NM_002192.2	280	Gga/Tga																																																																															
TET1	80312	MSKCC	GRCh37	10	70404552	70404552	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	217	449	0	ENST00000373644.4:c.2066C>G	p.Pro689Arg	p.P689R	ENST00000373644	NM_030625.2	689	cCa/cGa																																																																															
MLL2	8085	MSKCC	GRCh37	12	49448414	49448414	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	223	541	0	ENST00000301067.7:c.297del	p.Ser102AlafsTer28	p.S102Afs*28	ENST00000301067	NM_003482.3	99	ccT/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0015582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	104	320	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0015582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	45	269	0	ENST00000412916.2:c.165+1del		p.X55_splice	ENST00000412916		55																																																																																
CDKN1B	1027	MSKCC	GRCh37	12	12870993	12870994	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0015582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	73	349	0	ENST00000228872.4:c.221dup	p.Tyr74Ter	p.Y74*	ENST00000228872	NM_004064.3	74	tac/tAac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110064	115110070	+	frameshift_variant	Frame_Shift_Del	DEL	TAGGGGT	TAGGGGT	-			P-0015582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	158	747	0	ENST00000257566.3:c.1808_1814del	p.Tyr603SerfsTer27	p.Y603Sfs*27	ENST00000257566	NM_016569.3	603	tACCCCTAc/tc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120639	115120639	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	179	743	0	ENST00000257566.3:c.367A>G	p.Met123Val	p.M123V	ENST00000257566	NM_016569.3	123	Atg/Gtg																																																																															
CDH1	999	MSKCC	GRCh37	16	68853179	68853187	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCAGATATC	TCAGATATC	-			P-0015582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	97	378	0	ENST00000261769.5:c.1566-4_1570del		p.X522_splice	ENST00000261769	NM_004360.3	522																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0015585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	55	210	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0015585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	134	450	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0015585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	94	431	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
FH	2271	MSKCC	GRCh37	1	241669381	241669381	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	124	387	0	ENST00000366560.3:c.826G>T	p.Gly276Cys	p.G276C	ENST00000366560	NM_000143.3	276	Ggc/Tgc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0015586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	507	380	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0015586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	253	341	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0015587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	161	356	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38061137	38061185	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCG	GCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCG	-			P-0015587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	107	181	0	ENST00000250448.2:c.804_852del	p.Cys268Ter	p.C268*	ENST00000250448	NM_004496.3	268	tgCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGC/tg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098954	178098954	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	124	247	0	ENST00000397062.3:c.91G>C	p.Gly31Arg	p.G31R	ENST00000397062	NM_006164.4	31	Gga/Cga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157470015	157470015	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	151	320	0	ENST00000346085.5:c.2809A>G	p.Thr937Ala	p.T937A	ENST00000346085	NM_020732.3	937	Act/Gct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	313	361	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	156	365	0				ENST00000310581	NM_198253.2																																																																																	
CBL	867	MSKCC	GRCh37	11	119145615	119145615	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	145	294	0	ENST00000264033.4:c.821A>T	p.Tyr274Phe	p.Y274F	ENST00000264033	NM_005188.3	274	tAt/tTt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561040	9561040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	98	194	0	ENST00000353224.5:c.742G>A	p.Glu248Lys	p.E248K	ENST00000353224	NM_177990.2	248	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0015593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	147	537	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
MET	4233	MSKCC	GRCh37	7	116411902	116411902	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0015593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	518	562	1	ENST00000397752.3:c.2888-1G>A		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
ANKRD11	29123	MSKCC	GRCh37	16	89341313	89341313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	109	180	0	ENST00000301030.4:c.7622C>T	p.Ala2541Val	p.A2541V	ENST00000301030	NM_001256183.1	2541	gCg/gTg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39657720	39657720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	89	376	0	ENST00000361337.2:c.13C>G	p.His5Asp	p.H5D	ENST00000361337	NM_003286.2	5	Cac/Gac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934004	39934004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	61	521	1	ENST00000378444.4:c.595G>A	p.Ala199Thr	p.A199T	ENST00000378444	NM_001123385.1	199	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	21	392	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	36	402	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575152	48575152	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	23	239	0	ENST00000342988.3:c.346C>T	p.Gln116Ter	p.Q116*	ENST00000342988	NM_005359.5	116	Cag/Tag																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0015601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	141	482	1	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134670325	134670325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	223	288	1	ENST00000398015.3:c.236G>A	p.Arg79Gln	p.R79Q	ENST00000398015	NM_004441.4	79	cGg/cAg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115729	8115730	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	149	293	0	ENST00000346208.3:c.1077dupA	p.Gly360ArgfsTer11	p.G360Rfs*11	ENST00000346208		359	gaa/gAaa																																																																															
CBFB	865	MSKCC	GRCh37	16	67100668	67100687	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCTGTCTGGAGTTTGATG	GGGCTGTCTGGAGTTTGATG	-			P-0015602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	230	397	0	ENST00000412916.2:c.366_385del	p.Met122IlefsTer16	p.M122Ifs*16	ENST00000412916		122	atGGGCTGTCTGGAGTTTGATGag/atag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67663437	67663438	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0015602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	192	187	0	ENST00000264010.4:c.1837+2dup		p.X613_splice	ENST00000264010	NM_006565.3	613																																																																																
SF3B1	23451	MSKCC	GRCh37	2	198266508	198266508	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	116	262	0	ENST00000335508.6:c.2328A>T	p.Glu776Asp	p.E776D	ENST00000335508	NM_012433.2	776	gaA/gaT																																																																															
PPARG	5468	MSKCC	GRCh37	3	12447429	12447429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	158	586	0	ENST00000287820.6:c.668C>T	p.Ala223Val	p.A223V	ENST00000287820	NM_015869.4	223	gCg/gTg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52713588	52713588	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0015614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	80	448	0	ENST00000394830.3:c.138+2T>C		p.X46_splice	ENST00000394830	NM_018313.4	46																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	330	701	0	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948288	71948296	+	inframe_deletion	In_Frame_Del	DEL	GCCACCCTC	GCCACCCTC	-			P-0015618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1354	526	867	0	ENST00000298229.2:c.3003_3011del	p.Pro1002_Pro1004del	p.P1002_P1004del	ENST00000298229	NM_001567.3	1000	gaGCCACCCTCg/gag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	443503	443503	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	407	648	0	ENST00000399788.2:c.1394G>T	p.Gly465Val	p.G465V	ENST00000399788	NM_001042603.1	465	gGt/gTt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2132484	2132484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	548	691	2	ENST00000219476.3:c.3862C>T	p.His1288Tyr	p.H1288Y	ENST00000219476	NM_000548.3	1288	Cac/Tac																																																																															
FLCN	201163	MSKCC	GRCh37	17	17120454	17120454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	445	701	0	ENST00000285071.4:c.1105C>T	p.Leu369Phe	p.L369F	ENST00000285071	NM_144997.5	369	Ctc/Ttc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566718	212566718	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762812065		P-0015618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	122	297	0	ENST00000342788.4:c.1463G>A	p.Arg488Gln	p.R488Q	ENST00000342788	NM_005235.2	488	cGg/cAg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42848507	42848521	+	frameshift_variant	Frame_Shift_Del	DEL	TACAGCGTAAAGAAA	TACAGCGTAAAGAAA	AAAG			P-0015618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	258	617	3	ENST00000398585.3:c.821_835delinsCTTT	p.Val274AlafsTer63	p.V274Afs*63	ENST00000398585	NM_001135099.1	274	gTTTCTTTACGCTGTAta/gCTTTta																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099406	157099426	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAGCAA	CAGCAGCAGCAGCAGCAGCAA	-	rs775084783		P-0015628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	68	385	0	ENST00000346085.5:c.363_383del	p.Gln125_Gln131del	p.Q125_Q131del	ENST00000346085	NM_020732.3	115	CAGCAGCAGCAGCAGCAGCAA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	528	831	0	ENST00000269305.4:c.487T>A	p.Tyr163Asn	p.Y163N	ENST00000269305	NM_001126112.2	163	Tac/Aac																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513182	106513182	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	53	254	2	ENST00000359195.3:c.2089del	p.Trp697GlyfsTer3	p.W697Gfs*3	ENST00000359195	NM_002649.2	696	Ttt/tt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513200	106513200	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	61	282	0	ENST00000359195.3:c.2104G>C	p.Glu702Gln	p.E702Q	ENST00000359195	NM_002649.2	702	Gag/Cag																																																																															
ATRX	546	MSKCC	GRCh37	X	76918842	76918905	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTTACATTCAGAATTAAAACATCTTACCCTTTCTTCTGTTTCTGCCTTTGACTTCTTTATGC	TCTTTACATTCAGAATTAAAACATCTTACCCTTTCTTCTGTTTCTGCCTTTGACTTCTTTATGC	-			P-0015628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	109	161	0	ENST00000373344.5:c.4086_4120+29del		p.X1362_splice	ENST00000373344	NM_000489.3	1362																																																																																
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0015629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	739	847	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971154	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0015629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	210	590	0	ENST00000304494.5:c.204_205delinsTT	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	68	gcGGag/gcTTag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257210	16257210	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	165	589	0	ENST00000375759.3:c.4475C>G	p.Ser1492Cys	p.S1492C	ENST00000375759	NM_015001.2	1492	tCc/tGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057991	27057991	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	286	688	0	ENST00000324856.7:c.1699C>T	p.Gln567Ter	p.Q567*	ENST00000324856	NM_006015.4	567	Cag/Tag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64127755	64127755	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	395	673	0	ENST00000334205.4:c.248G>C	p.Arg83Pro	p.R83P	ENST00000334205	NM_003942.2	83	cGc/cCc																																																																															
MGA	23269	MSKCC	GRCh37	15	42046729	42046729	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	290	724	0	ENST00000219905.7:c.7103A>G	p.Lys2368Arg	p.K2368R	ENST00000219905	NM_001164273.1	2368	aAg/aGg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812236	212812236	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	130	432	0	ENST00000342788.4:c.340C>G	p.Arg114Gly	p.R114G	ENST00000342788	NM_005235.2	114	Cga/Gga																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0015632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	188	736	1	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
TP53	7157	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1401	153	1019	0	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																																																															
MGA	23269	MSKCC	GRCh37	15	42041591	42041591	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	86	626	0	ENST00000219905.7:c.5786A>T	p.Gln1929Leu	p.Q1929L	ENST00000219905	NM_001164273.1	1929	cAg/cTg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761012	59761012	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	78	500	0	ENST00000259008.2:c.3395T>A	p.Phe1132Tyr	p.F1132Y	ENST00000259008	NM_032043.2	1132	tTt/tAt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17951153	17951153	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	T			P-0015632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	98	632	0	ENST00000458235.1:c.1143-3C>A		p.X381_splice	ENST00000458235	NM_000215.3	381																																																																																
EPHA7	2045	MSKCC	GRCh37	6	93982029	93982029	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	28	328	0	ENST00000369303.4:c.1436A>T	p.Lys479Met	p.K479M	ENST00000369303	NM_004440.3	479	aAg/aTg																																																																															
MET	4233	MSKCC	GRCh37	7	116395570	116395570	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	44	377	0	ENST00000397752.3:c.1862+1G>A		p.X621_splice	ENST00000397752	NM_000245.2	621																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0015633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	56	430	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916947	178916947	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	62	382	0	ENST00000263967.3:c.334A>T	p.Ile112Phe	p.I112F	ENST00000263967	NM_006218.2	112	Atc/Ttc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520274	176520274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	148	643	5	ENST00000292408.4:c.1193G>A	p.Arg398Gln	p.R398Q	ENST00000292408	NM_213647.1	398	cGg/cAg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63700142	63700142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	41	227	0	ENST00000279873.7:c.477C>A	p.Asp159Glu	p.D159E	ENST00000279873	NM_032199.2	159	gaC/gaA																																																																															
CBFB	865	MSKCC	GRCh37	16	67070577	67070577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	44	277	0	ENST00000412916.2:c.201G>T	p.Gln67His	p.Q67H	ENST00000412916		67	caG/caT																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184102	56184102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	81	477	0	ENST00000399503.3:c.4307G>A	p.Gly1436Asp	p.G1436D	ENST00000399503	NM_005921.1	1436	gGc/gAc																																																																															
MLL3	58508	MSKCC	GRCh37	7	151860719	151860719	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	118	435	0	ENST00000262189.6:c.9943C>T	p.Gln3315Ter	p.Q3315*	ENST00000262189	NM_170606.2	3315	Cag/Tag																																																																															
MLL3	58508	MSKCC	GRCh37	7	151878331	151878331	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	78	522	1	ENST00000262189.6:c.6614A>C	p.His2205Pro	p.H2205P	ENST00000262189	NM_170606.2	2205	cAt/cCt																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370320	40370320	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	183	960	0	ENST00000293328.3:c.1018C>G	p.Gln340Glu	p.Q340E	ENST00000293328	NM_012448.3	340	Cag/Gag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458444	120458457	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGCTCCCGAGGG	AGGGCTCCCGAGGG	-			P-0015634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	104	593	0	ENST00000256646.2:c.6888_6901del	p.Pro2297AlafsTer11	p.P2297Afs*11	ENST00000256646	NM_024408.3	2296	acCCCTCGGGAGCCCTtg/actg																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518452	69518452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	102	443	1	ENST00000294312.3:c.193G>A	p.Asp65Asn	p.D65N	ENST00000294312	NM_005117.2	65	Gac/Aac																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940790	71940790	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	168	797	0	ENST00000298229.2:c.837G>C	p.Gln279His	p.Q279H	ENST00000298229	NM_001567.3	279	caG/caC																																																																															
EED	8726	MSKCC	GRCh37	11	85977174	85977174	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	134	461	0	ENST00000263360.6:c.776C>G	p.Ser259Cys	p.S259C	ENST00000263360	NM_003797.3	259	tCt/tGt																																																																															
MLL	4297	MSKCC	GRCh37	11	118343496	118343496	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	114	580	0	ENST00000534358.1:c.1622G>C	p.Arg541Thr	p.R541T	ENST00000534358	NM_005933.3	541	aGa/aCa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3642836	3642836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	63	893	0	ENST00000294008.3:c.2191G>A	p.Asp731Asn	p.D731N	ENST00000294008	NM_032444.2	731	Gac/Aac																																																																															
CDH1	999	MSKCC	GRCh37	16	68844190	68844190	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	203	884	0	ENST00000261769.5:c.778C>A	p.Pro260Thr	p.P260T	ENST00000261769	NM_004360.3	260	Ccc/Acc																																																																															
YES1	7525	MSKCC	GRCh37	18	751756	751756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	106	637	0	ENST00000314574.4:c.320C>T	p.Thr107Ile	p.T107I	ENST00000314574	NM_005433.3	107	aCa/aTa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630376	47630376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	198	736	0	ENST00000233146.2:c.46G>A	p.Glu16Lys	p.E16K	ENST00000233146	NM_000251.2	16	Gag/Aag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685297	86685297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	66	235	0	ENST00000274376.6:c.3013C>T	p.His1005Tyr	p.H1005Y	ENST00000274376	NM_002890.2	1005	Cat/Tat																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190801	32190801	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	213	954	0	ENST00000375023.3:c.136C>G	p.Leu46Val	p.L46V	ENST00000375023	NM_004557.3	46	Ctg/Gtg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93964367	93964367	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0015634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	97	542	0	ENST00000369303.4:c.2530G>C	p.Asp844His	p.D844H	ENST00000369303	NM_004440.3	844	Gat/Cat																																																																															
MLL3	58508	MSKCC	GRCh37	7	151845469	151845469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	70	715	0	ENST00000262189.6:c.13543G>A	p.Glu4515Lys	p.E4515K	ENST00000262189	NM_170606.2	4515	Gaa/Aaa																																																																															
MLL3	58508	MSKCC	GRCh37	7	151874644	151874644	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	130	443	0	ENST00000262189.6:c.7894C>G	p.Gln2632Glu	p.Q2632E	ENST00000262189	NM_170606.2	2632	Caa/Gaa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740396	145740396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	51	1026	0	ENST00000428558.2:c.1544C>T	p.Pro515Leu	p.P515L	ENST00000428558	NM_004260.3	515	cCa/cTa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570195	87570195	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0015634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	47	275	2	ENST00000277120.3:c.1938-3C>T		p.X646_splice	ENST00000277120		646																																																																																
PTCH1	5727	MSKCC	GRCh37	9	98218668	98218668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	114	544	0	ENST00000331920.6:c.3196G>A	p.Glu1066Lys	p.E1066K	ENST00000331920	NM_000264.3	1066	Gag/Aag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44935946	44935953	+	frameshift_variant	Frame_Shift_Del	DEL	CTAGGTAA	CTAGGTAA	-			P-0015634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	95	391	0	ENST00000377967.4:c.2707_2714del	p.Leu903LysfsTer5	p.L903Kfs*5	ENST00000377967	NM_021140.2	903	CTAGGTAAa/a																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0015636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	24	578	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279760	46279760	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	33	545	0	ENST00000371998.3:c.3686G>T	p.Arg1229Leu	p.R1229L	ENST00000371998		1229	cGc/cTc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440925	52440925	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0015636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	39	564	0	ENST00000460680.1:c.581-2A>G		p.X194_splice	ENST00000460680	NM_004656.3	194																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178921566	178921566	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793349		P-0015640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	79	321	0	ENST00000263967.3:c.1048G>A	p.Asp350Asn	p.D350N	ENST00000263967	NM_006218.2	350	Gac/Aac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	112	463	0	ENST00000263967.3:c.3132T>A	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaA																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115947	8115948	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0015640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	85	360	0	ENST00000346208.3:c.1294_1295dup	p.His434ThrfsTer42	p.H434Tfs*42	ENST00000346208		431	-/CC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0015642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	318	569	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0015642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	200	918	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057665	27057665	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	127	839	0	ENST00000324856.7:c.1373G>T	p.Gly458Val	p.G458V	ENST00000324856	NM_006015.4	458	gGc/gTc																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871848	35871848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	118	584	0	ENST00000216797.5:c.658G>A	p.Ala220Thr	p.A220T	ENST00000216797	NM_020529.2	220	Gcc/Acc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492867	56492870	+	frameshift_variant	Frame_Shift_Del	DEL	GCCT	GCCT	-			P-0015642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	97	432	0	ENST00000407977.2:c.69_72del	p.Gly24LeufsTer26	p.G24Lfs*26	ENST00000407977		23	gcAGGC/gc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575063	48575063	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	134	401	0	ENST00000342988.3:c.257G>T	p.Gly86Val	p.G86V	ENST00000342988	NM_005359.5	86	gGt/gTt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117641068	117641068	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0015642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	179	636	0	ENST00000368508.3:c.5903T>G	p.Leu1968Ter	p.L1968*	ENST00000368508	NM_002944.2	1968	tTa/tGa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0015643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1281	88	665	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0015648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	12	426	3	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953574	32953574	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	11	677	1	ENST00000380152.3:c.8875G>T	p.Glu2959Ter	p.E2959*	ENST00000380152		2959	Gaa/Taa																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945061	31945061	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	11	644	0	ENST00000340398.3:c.40G>T	p.Gly14Trp	p.G14W	ENST00000340398	NM_001013699.2	14	Ggg/Tgg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40457683	40457683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	17	631	1	ENST00000345506.4:c.1436C>T	p.Thr479Met	p.T479M	ENST00000345506	NM_003152.3	479	aCg/aTg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430231	181430231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	12	393	1	ENST00000325404.1:c.83C>T	p.Ala28Val	p.A28V	ENST00000325404	NM_003106.3	28	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	295	437	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602581	10602581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	388	508	0	ENST00000171111.5:c.997G>T	p.Gly333Cys	p.G333C	ENST00000171111	NM_203500.1	333	Ggc/Tgc																																																																															
KDR	3791	MSKCC	GRCh37	4	55979471	55979471	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0015667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	111	315	0	ENST00000263923.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000263923	NM_002253.2	326	Gaa/Taa																																																																															
MLL2	8085	MSKCC	GRCh37	12	49432153	49432153	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	233	586	0	ENST00000301067.7:c.8986G>T	p.Asp2996Tyr	p.D2996Y	ENST00000301067	NM_003482.3	2996	Gat/Tat																																																																															
RAB35	11021	MSKCC	GRCh37	12	120535162	120535162	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	109	355	0	ENST00000229340.5:c.493A>T	p.Thr165Ser	p.T165S	ENST00000229340	NM_006861.6	165	Acg/Tcg																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805940	46805940	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	190	258	0	ENST00000290295.7:c.16T>A	p.Tyr6Asn	p.Y6N	ENST00000290295	NM_006361.5	6	Tat/Aat																																																																															
STK11	6794	MSKCC	GRCh37	19	1207014	1207023	+	frameshift_variant	Frame_Shift_Del	DEL	CATCTACCAG	CATCTACCAG	-			P-0015667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	300	567	0	ENST00000326873.7:c.103_112del	p.Ile35ArgfsTer13	p.I35Rfs*13	ENST00000326873	NM_000455.4	34	gtCATCTACCAG/gt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733234	40733234	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	171	522	0	ENST00000373198.4:c.3572C>G	p.Ser1191Cys	p.S1191C	ENST00000373198	NM_133170.3	1191	tCc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	75	629	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092802	27092802	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	104	864	0	ENST00000324856.7:c.2823del	p.Asn942ThrfsTer26	p.N942Tfs*26	ENST00000324856	NM_006015.4	941	atC/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	73	898	0	ENST00000269305.4:c.613T>C	p.Tyr205His	p.Y205H	ENST00000269305	NM_001126112.2	205	Tat/Cat																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30099996	30099996	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	65	582	0	ENST00000331968.5:c.1624C>G	p.Pro542Ala	p.P542A	ENST00000331968	NM_002742.2	542	Ccc/Gcc																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2094699	2094699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	99	845	0	ENST00000219066.1:c.481G>A	p.Val161Met	p.V161M	ENST00000219066	NM_002528.5	161	Gtg/Atg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2225438	2225457	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AACCTTGGAAAATGGTGAGT	AACCTTGGAAAATGGTGAGT	-			P-0015668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	34	657	0	ENST00000398665.3:c.3651_3661+9del		p.X1217_splice	ENST00000398665	NM_032482.2	1217																																																																																
TERT	7015	MSKCC	GRCh37	5	1293694	1293695	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0015668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	57	906	4	ENST00000310581.5:c.1306_1307delinsTT	p.Ala436Leu	p.A436L	ENST00000310581	NM_198253.2	436	GCg/TTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0015670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	462	489	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0015670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	286	571	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193107236	193107236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	223	277	1	ENST00000367435.3:c.445G>A	p.Asp149Asn	p.D149N	ENST00000367435	NM_024529.4	149	Gat/Aat																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692839	89692839	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	170	161	0	ENST00000371953.3:c.323T>G	p.Leu108Arg	p.L108R	ENST00000371953	NM_000314.4	108	cTt/cGt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3801743	3801743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	324	340	0	ENST00000262367.5:c.3763C>T	p.Pro1255Ser	p.P1255S	ENST00000262367	NM_004380.2	1255	Cct/Tct																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2208935	2208935	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0015670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	536	387	0	ENST00000398665.3:c.965T>C	p.Leu322Pro	p.L322P	ENST00000398665	NM_032482.2	322	cTt/cCt																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10287988	10287988	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	213	495	0	ENST00000340748.4:c.501C>G	p.Ile167Met	p.I167M	ENST00000340748		167	atC/atG																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419884	152419884	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2238	742	359	0	ENST00000206249.3:c.1571A>T	p.His524Leu	p.H524L	ENST00000206249	NM_000125.3	524	cAt/cTt																																																																															
ATRX	546	MSKCC	GRCh37	X	76854883	76854883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	432	489	0	ENST00000373344.5:c.5953G>A	p.Glu1985Lys	p.E1985K	ENST00000373344	NM_000489.3	1985	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	193	299	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0015672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	215	329	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
CCND2	894	MSKCC	GRCh37	12	4383319	4383319	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	107	381	0	ENST00000261254.3:c.113T>G	p.Leu38Arg	p.L38R	ENST00000261254	NM_001759.3	38	cTt/cGt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972533	32972533	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	203	325	0	ENST00000380152.3:c.9883C>T	p.Gln3295Ter	p.Q3295*	ENST00000380152		3295	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	67	321	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986975	36986975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	73	395	0	ENST00000354822.5:c.714G>T	p.Trp238Cys	p.W238C	ENST00000354822	NM_001079668.2	238	tgG/tgT																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44820577	44820577	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	37	356	0	ENST00000377967.4:c.274G>T	p.Glu92Ter	p.E92*	ENST00000377967	NM_021140.2	92	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579470	7579470	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	44	436	1	ENST00000269305.4:c.217del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	73	Gtg/tg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	28	446	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0015683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	31	703	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0015685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	157	513	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259199	36259199	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	139	705	0	ENST00000300305.3:c.292delC	p.Leu98SerfsTer24	p.L98Sfs*24	ENST00000300305		98	Ctc/tc																																																																															
CDH1	999	MSKCC	GRCh37	16	68855944	68855944	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	108	552	0	ENST00000261769.5:c.1753del	p.Leu585CysfsTer4	p.L585Cfs*4	ENST00000261769	NM_004360.3	584	atC/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0015688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	221	771	2	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	93	497	1				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7579386	7579386	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0015693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	198	724	0	ENST00000269305.4:c.301A>T	p.Lys101Ter	p.K101*	ENST00000269305	NM_001126112.2	101	Aaa/Taa																																																																															
NF2	4771	MSKCC	GRCh37	22	30067836	30067836	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	99	320	0	ENST00000338641.4:c.1021C>T	p.Arg341Ter	p.R341*	ENST00000338641	NM_000268.3	341	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	235	427	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0015695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	203	745	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0015700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	196	651	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0015700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	78	345	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10248552	10248552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1129	186	774	2	ENST00000340748.4:c.4201C>T	p.Arg1401Trp	p.R1401W	ENST00000340748		1401	Cgg/Tgg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731065	162731065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	142	508	0	ENST00000367921.3:c.920G>A	p.Arg307His	p.R307H	ENST00000367921	NM_006182.2	307	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	186	435	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0015701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	276	656	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579317	7579317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	101	531	0	ENST00000269305.4:c.370delT	p.Cys124AlafsTer46	p.C124Afs*46	ENST00000269305	NM_001126112.2	124	Tgc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	133	420	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0015703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	143	325	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0015703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	52	280	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
INSR	3643	MSKCC	GRCh37	19	7120689	7120689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	55	698	1	ENST00000302850.5:c.3601C>T	p.Arg1201Trp	p.R1201W	ENST00000302850	NM_000208.2	1201	Cgg/Tgg																																																																															
KDR	3791	MSKCC	GRCh37	4	55972088	55972088	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	74	328	0	ENST00000263923.4:c.1556T>A	p.Ile519Asn	p.I519N	ENST00000263923	NM_002253.2	519	aTc/aAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047894	180047894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	91	711	3	ENST00000261937.6:c.2281G>A	p.Ala761Thr	p.A761T	ENST00000261937	NM_182925.4	761	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	256	468	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577123	7577123	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs876660333		P-0015705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	210	762	1	ENST00000269305.4:c.815T>A	p.Val272Glu	p.V272E	ENST00000269305	NM_001126112.2	272	gTg/gAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573649	48573649	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0015705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	51	430	0	ENST00000342988.3:c.233T>A	p.Leu78Ter	p.L78*	ENST00000342988	NM_005359.5	78	tTg/tAg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216446	2216446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	81	695	0	ENST00000398665.3:c.2090C>T	p.Thr697Ile	p.T697I	ENST00000398665	NM_032482.2	697	aCc/aTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281488	15281488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	67	699	0	ENST00000263388.2:c.4885G>A	p.Val1629Met	p.V1629M	ENST00000263388	NM_000435.2	1629	Gtg/Atg																																																																															
MLL4	9757	MSKCC	GRCh37	19	36212302	36212302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	85	718	1	ENST00000222270.7:c.2053G>A	p.Asp685Asn	p.D685N	ENST00000222270	NM_014727.1	685	Gat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	69	388	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221301	1221301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	88	735	0	ENST00000326873.7:c.824C>T	p.Pro275Leu	p.P275L	ENST00000326873	NM_000455.4	275	cCg/cTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209351	98209351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	30	582	2	ENST00000331920.6:c.4187G>T	p.Gly1396Val	p.G1396V	ENST00000331920	NM_000264.3	1396	gGa/gTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	31	874	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520006		P-0015708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1316	66	924	0	ENST00000269305.4:c.821T>G	p.Val274Gly	p.V274G	ENST00000269305	NM_001126112.2	274	gTt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0015713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	381	550	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0015714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	131	532	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
CDC73	79577	MSKCC	GRCh37	1	193121548	193121548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	88	336	1	ENST00000367435.3:c.946C>T	p.His316Tyr	p.H316Y	ENST00000367435	NM_024529.4	316	Cat/Tat																																																																															
INSR	3643	MSKCC	GRCh37	19	7267435	7267435	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	73	381	1	ENST00000302850.5:c.573G>T	p.Lys191Asn	p.K191N	ENST00000302850	NM_000208.2	191	aaG/aaT																																																																															
RB1	5925	MSKCC	GRCh37	13	49030479	49030479	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	122	802	0	ENST00000267163.4:c.1959delA	p.Val654CysfsTer4	p.V654Cfs*4	ENST00000267163	NM_000321.2	652	Aaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0015719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	194	1007	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	10274124	10274124	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	180	1240	2	ENST00000330684.3:c.145C>A	p.Arg49Ser	p.R49S	ENST00000330684	NM_001134407.1	49	Cgc/Agc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78599580	78599580	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	96	766	1	ENST00000306801.3:c.253del	p.Glu85AsnfsTer117	p.E85Nfs*117	ENST00000306801	NM_020761.2	84	ttG/tt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259631	89259631	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	41	694	1	ENST00000336596.2:c.775T>A	p.Cys259Ser	p.C259S	ENST00000336596	NM_005233.5	259	Tgc/Agc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66233072	66233072	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	A			P-0015719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	38	830	0	ENST00000273854.3:c.1924+3A>T		p.X642_splice	ENST00000273854	NM_004439.5	642																																																																																
FAT1	2195	MSKCC	GRCh37	4	187534266	187534266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	251	689	0	ENST00000441802.2:c.9460G>T	p.Ala3154Ser	p.A3154S	ENST00000441802	NM_005245.3	3154	Gca/Tca																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048703	180048703	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	114	1329	1	ENST00000261937.6:c.1859T>C	p.Leu620Pro	p.L620P	ENST00000261937	NM_182925.4	620	cTg/cCg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250359	110250359	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	27	1990	0	ENST00000374672.4:c.316G>C	p.Asp106His	p.D106H	ENST00000374672	NM_004235.4	106	Gac/Cac																																																																															
NF1	4763	MSKCC	GRCh37	17	29559090	29559090	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0015719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	16	184	0	ENST00000358273.4:c.3198-1G>C		p.X1066_splice	ENST00000358273	NM_001042492.2	1066																																																																																
TSC2	7249	MSKCC	GRCh37	16	2136799	2136799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	687	959	4	ENST00000219476.3:c.4916G>A	p.Arg1639His	p.R1639H	ENST00000219476	NM_000548.3	1639	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	402	702	0	ENST00000269305.4:c.568C>T	p.Pro190Ser	p.P190S	ENST00000269305	NM_001126112.2	190	Cct/Tct																																																																															
CUL3	8452	MSKCC	GRCh37	2	225339002	225339002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	36	490	3	ENST00000264414.4:c.2267G>A	p.Arg756Gln	p.R756Q	ENST00000264414	NM_003590.4	756	cGa/cAa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246363	46246363	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	249	357	0	ENST00000334344.6:c.4457T>C	p.Val1486Ala	p.V1486A	ENST00000334344	NM_152641.2	1486	gTt/gCt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487589	56487589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	366	525	0	ENST00000267101.3:c.1522G>A	p.Gly508Arg	p.G508R	ENST00000267101	NM_001982.3	508	Gga/Aga																																																																															
TERT	7015	MSKCC	GRCh37	5	1266640	1266640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	363	554	0	ENST00000310581.5:c.2593C>T	p.Arg865Cys	p.R865C	ENST00000310581	NM_198253.2	865	Cgt/Tgt																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64289181	64289181	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	698	541	0	ENST00000370651.3:c.349C>G	p.Leu117Val	p.L117V	ENST00000370651	NM_003463.4	117	Cta/Gta																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552789	106552789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	464	823	0	ENST00000369096.4:c.754G>C	p.Glu252Gln	p.E252Q	ENST00000369096	NM_001198.3	252	Gaa/Caa																																																																															
ATRX	546	MSKCC	GRCh37	X	76814186	76814186	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	242	437	0	ENST00000373344.5:c.6458G>T	p.Arg2153Leu	p.R2153L	ENST00000373344	NM_000489.3	2153	cGc/cTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047888	180047888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	80	1002	0	ENST00000261937.6:c.2287G>A	p.Val763Met	p.V763M	ENST00000261937	NM_182925.4	763	Gtg/Atg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120527	70120527	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0015727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	900	827	0	ENST00000245479.2:c.1529G>C	p.Ter510SerextTer49	p.*510Sext*49	ENST00000245479	NM_000346.3	510	tGa/tCa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0015727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	455	677	3	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0015727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	155	216	0	ENST00000257430.4:c.4128T>A	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taA																																																																															
ATM	472	MSKCC	GRCh37	11	108196143	108196143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	120	524	0	ENST00000278616.4:c.6679C>T	p.Arg2227Cys	p.R2227C	ENST00000278616	NM_000051.3	2227	Cgc/Tgc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731139	162731139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	155	416	0	ENST00000367921.3:c.994C>T	p.Arg332Trp	p.R332W	ENST00000367921	NM_006182.2	332	Cgg/Tgg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2202758	2202758	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1197029182		P-0015727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	211	536	0	ENST00000398665.3:c.767G>A	p.Arg256Gln	p.R256Q	ENST00000398665	NM_032482.2	256	cGg/cAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212056	5212056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	167	499	2	ENST00000357368.4:c.4975C>T	p.Arg1659Cys	p.R1659C	ENST00000357368	NM_002850.3	1659	Cgc/Tgc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71101744	71101744	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	53	237	0	ENST00000318789.4:c.454del	p.Glu152AsnfsTer54	p.E152Nfs*54	ENST00000318789	NM_032682.5	152	Gaa/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922306	178922306	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	90	398	0	ENST00000263967.3:c.1075G>C	p.Gly359Arg	p.G359R	ENST00000263967	NM_006218.2	359	Ggt/Cgt																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84390203	84390203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113013207		P-0015727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	108	378	0	ENST00000321945.7:c.578G>A	p.Arg193Gln	p.R193Q	ENST00000321945	NM_139076.2	193	cGa/cAa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117704647	117704647	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	86	224	0	ENST00000368508.3:c.2329G>T	p.Gly777Ter	p.G777*	ENST00000368508	NM_002944.2	777	Gga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	64	468	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	162	563	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891277	101891277	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	82	569	1	ENST00000374994.4:c.238C>T	p.Arg80Ter	p.R80*	ENST00000374994	NM_004612.2	80	Cga/Tga																																																																															
WT1	7490	MSKCC	GRCh37	11	32456737	32456737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	160	486	1	ENST00000332351.3:c.155G>A	p.Arg52His	p.R52H	ENST00000332351	NM_024426.4	52	cGt/cAt																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257412	19257412	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1528	230	1024	2	ENST00000162023.5:c.721C>A	p.Pro241Thr	p.P241T	ENST00000162023		241	Ccc/Acc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248729	212248729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	64	301	0	ENST00000342788.4:c.3538C>T	p.Leu1180Phe	p.L1180F	ENST00000342788	NM_005235.2	1180	Ctt/Ttt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0015730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	172	630	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0015730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	120	522	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0015730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	124	598	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0015730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	110	496	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
TET1	80312	MSKCC	GRCh37	10	70450648	70450648	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	152	514	0	ENST00000373644.4:c.5488A>T	p.Thr1830Ser	p.T1830S	ENST00000373644	NM_030625.2	1830	Act/Tct																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549162	21549162	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	169	787	0	ENST00000382592.4:c.3114C>A	p.Tyr1038Ter	p.Y1038*	ENST00000382592	NM_014572.2	1038	taC/taA																																																																															
MGA	23269	MSKCC	GRCh37	15	42003149	42003149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	300	702	0	ENST00000219905.7:c.2686C>T	p.Arg896Ter	p.R896*	ENST00000219905	NM_001164273.1	896	Cga/Tga																																																																															
MLL4	9757	MSKCC	GRCh37	19	36229083	36229083	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	139	676	0	ENST00000222270.7:c.7863C>A	p.Tyr2621Ter	p.Y2621*	ENST00000222270	NM_014727.1	2621	taC/taA																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62316879	62316879	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	106	606	0	ENST00000508582.2:c.1267G>T	p.Val423Leu	p.V423L	ENST00000508582		423	Gtg/Ttg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177984	56177986	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0015730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	102	493	1	ENST00000399503.3:c.2965_2967del	p.Ser989del	p.S989del	ENST00000399503	NM_005921.1	986	cCTTct/cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	201	570	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	65	408	0	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94200981	94200981	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0015732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	82	233	0	ENST00000323929.3:c.1096C>T	p.Arg366Ter	p.R366*	ENST00000323929	NM_005591.3	366	Cga/Tga																																																																															
BRD4	23476	MSKCC	GRCh37	19	15383860	15383867	+	frameshift_variant	Frame_Shift_Del	DEL	CATTACTG	CATTACTG	-			P-0015732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	115	534	0	ENST00000263377.2:c.44_51del	p.Pro15ArgfsTer37	p.P15Rfs*37	ENST00000263377	NM_058243.2	15	cCAGTAATG/c																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62321450	62321450	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	69	534	0	ENST00000508582.2:c.2224G>C	p.Ala742Pro	p.A742P	ENST00000508582		742	Gcc/Ccc																																																																															
APC	324	MSKCC	GRCh37	5	112157629	112157653	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGTGTTCTAATGAAACTTTCATT	TGTGTGTTCTAATGAAACTTTCATT	-			P-0015732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	34	326	0	ENST00000257430.4:c.1351_1375del	p.Cys451MetfsTer8	p.C451Mfs*8	ENST00000257430	NM_000038.5	450	gTGTGTGTTCTAATGAAACTTTCATTt/gt																																																																															
APC	324	MSKCC	GRCh37	5	112174851	112174854	+	frameshift_variant	Frame_Shift_Del	DEL	TTCC	TTCC	-			P-0015732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	30	197	0	ENST00000257430.4:c.3563_3566del	p.Pro1188HisfsTer76	p.P1188Hfs*76	ENST00000257430	NM_000038.5	1187	aTTCCt/at																																																																															
APC	324	MSKCC	GRCh37	5	112175312	112175312	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	38	203	0	ENST00000257430.4:c.4021A>G	p.Ser1341Gly	p.S1341G	ENST00000257430	NM_000038.5	1341	Agt/Ggt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	77	517	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0015733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	52	630	1	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0015734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	675	874	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
MLL	4297	MSKCC	GRCh37	11	118374166	118374182	+	frameshift_variant	Frame_Shift_Del	DEL	AACGCACAGTCAAAGTG	AACGCACAGTCAAAGTG	-			P-0015734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	275	441	0	ENST00000534358.1:c.7560_7576del	p.Lys2520AsnfsTer10	p.K2520Nfs*10	ENST00000534358	NM_005933.3	2520	aAACGCACAGTCAAAGTG/a																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912363	32912374	+	inframe_deletion	In_Frame_Del	DEL	CAACTGATATTA	CAACTGATATTA	-			P-0015734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	50	315	0	ENST00000380152.3:c.3874_3885del	p.Leu1292_Gln1295del	p.L1292_Q1295del	ENST00000380152		1291	CAACTGATATTA/-																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271562	15271562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	550	984	1	ENST00000263388.2:c.6877C>T	p.Pro2293Ser	p.P2293S	ENST00000263388	NM_000435.2	2293	Ccc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	162	543	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0015735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	170	603	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0015735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	137	441	1	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0015735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	324	824	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																															
APC	324	MSKCC	GRCh37	5	112174571	112174571	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	107	448	0	ENST00000257430.4:c.3281del	p.Gly1094AspfsTer32	p.G1094Dfs*32	ENST00000257430	NM_000038.5	1094	Gga/ga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504308	8504308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	215	531	0	ENST00000356435.5:c.1775G>T	p.Gly592Val	p.G592V	ENST00000356435		592	gGc/gTc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934345	39934345	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28935183		P-0015735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	256	678	1	ENST00000378444.4:c.254C>T	p.Pro85Leu	p.P85L	ENST00000378444	NM_001123385.1	85	cCg/cTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951994	178951994	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	52	537	0	ENST00000263967.3:c.3049G>C	p.Asp1017His	p.D1017H	ENST00000263967	NM_006218.2	1017	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578547	7578549	+	inframe_deletion	In_Frame_Del	DEL	GGG	GGG	-			P-0015739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1361	449	1307	1	ENST00000269305.4:c.381_383del	p.Pro128del	p.P128del	ENST00000269305	NM_001126112.2	127	tcCCCt/tct																																																																															
CDH1	999	MSKCC	GRCh37	16	68862111	68862112	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	221	647	0	ENST00000261769.5:c.2200dup	p.Arg734LysfsTer14	p.R734Kfs*14	ENST00000261769	NM_004360.3	733	-/A																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26101063	26101063	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	188	644	0	ENST00000435504.4:c.29del	p.Gly10AlafsTer12	p.G10Afs*12	ENST00000435504		10	gGc/gc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87322758	87322758	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0015744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	64	270	0	ENST00000277120.3:c.360-1G>A		p.X120_splice	ENST00000277120		120																																																																																
GATA3	2625	MSKCC	GRCh37	10	8100713	8100713	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	295	679	0	ENST00000346208.3:c.687C>A	p.Tyr229Ter	p.Y229*	ENST00000346208		229	taC/taA																																																																															
TET1	80312	MSKCC	GRCh37	10	70332268	70332268	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	97	349	0	ENST00000373644.4:c.174delT	p.Lys59ArgfsTer16	p.K59Rfs*16	ENST00000373644	NM_030625.2	58	gTt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0015749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	233	477	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702232	47702232	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	88	468	0	ENST00000233146.2:c.1828C>G	p.His610Asp	p.H610D	ENST00000233146	NM_000251.2	610	Cac/Gac																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702337	47702337	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	96	339	0	ENST00000233146.2:c.1933C>G	p.Gln645Glu	p.Q645E	ENST00000233146	NM_000251.2	645	Caa/Gaa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703705	47703705	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	72	339	0	ENST00000233146.2:c.2205C>G	p.Ile735Met	p.I735M	ENST00000233146	NM_000251.2	735	atC/atG																																																																															
CASP8	841	MSKCC	GRCh37	2	202150040	202150040	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	128	471	2	ENST00000358485.4:c.1481G>A	p.Arg494Gln	p.R494Q	ENST00000358485	NM_001080125.1	494	cGa/cAa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212495267	212495267	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	141	587	1	ENST00000342788.4:c.1999G>T	p.Val667Leu	p.V667L	ENST00000342788	NM_005235.2	667	Gtg/Ttg																																																																															
MLL3	58508	MSKCC	GRCh37	7	151864464	151864464	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0015749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	52	207	0	ENST00000262189.6:c.9518-1G>C		p.X3173_splice	ENST00000262189	NM_170606.2	3173																																																																																
ARAF	369	MSKCC	GRCh37	X	47426735	47426735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	126	246	0	ENST00000377045.4:c.980G>T	p.Gly327Val	p.G327V	ENST00000377045	NM_001654.4	327	gGg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	278	548	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	74	626	1	ENST00000269305.4:c.797del	p.Gly266AspfsTer79	p.G266Dfs*79	ENST00000269305	NM_001126112.2	266	gGa/ga																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30253775	30253775	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	69	490	0	ENST00000307677.4:c.679G>T	p.Gly227Cys	p.G227C	ENST00000307677	NM_138578.1	227	Ggc/Tgc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521723	89521723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	40	394	0	ENST00000336596.2:c.2800G>T	p.Gly934Cys	p.G934C	ENST00000336596	NM_005233.5	934	Ggt/Tgt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527814	157527814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	65	452	0	ENST00000346085.5:c.5539C>T	p.Pro1847Ser	p.P1847S	ENST00000346085	NM_020732.3	1847	Cct/Tct																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040974	47040974	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	87	618	0	ENST00000329236.7:c.1271del	p.Gly424ValfsTer202	p.G424Vfs*202	ENST00000329236	NM_001204466.1	424	Ggt/gt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913389		P-0015759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	314	458	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0015759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	344	620	1	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610265	10610265	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	391	827	3	ENST00000171111.5:c.445G>A	p.Glu149Lys	p.E149K	ENST00000171111	NM_203500.1	149	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023420	27023420	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	318	560	1	ENST00000324856.7:c.526C>T	p.Gln176Ter	p.Q176*	ENST00000324856	NM_006015.4	176	Caa/Taa																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112745438	112745438	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	141	726	0	ENST00000369452.4:c.756C>A	p.His252Gln	p.H252Q	ENST00000369452	NM_007373.3	252	caC/caA																																																																															
MLL2	8085	MSKCC	GRCh37	12	49435723	49435723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	365	643	2	ENST00000301067.7:c.6160G>A	p.Ala2054Thr	p.A2054T	ENST00000301067	NM_003482.3	2054	Gca/Aca																																																																															
EP300	2033	MSKCC	GRCh37	22	41548264	41548264	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	248	554	1	ENST00000263253.7:c.3052G>C	p.Glu1018Gln	p.E1018Q	ENST00000263253	NM_001429.3	1018	Gag/Cag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156609	55156609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	366	639	0	ENST00000257290.5:c.3010G>A	p.Glu1004Lys	p.E1004K	ENST00000257290	NM_006206.4	1004	Gag/Aag																																																																															
TET2	54790	MSKCC	GRCh37	4	106164830	106164830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	271	544	3	ENST00000380013.4:c.3698G>T	p.Trp1233Leu	p.W1233L	ENST00000380013	NM_001127208.2	1233	tGg/tTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106190854	106190854	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	245	509	0	ENST00000380013.4:c.4132T>C	p.Cys1378Arg	p.C1378R	ENST00000380013	NM_001127208.2	1378	Tgt/Cgt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5050825	5050825	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	111	603	0	ENST00000381652.3:c.608C>G	p.Ser203Cys	p.S203C	ENST00000381652	NM_004972.3	203	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	22	542	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SDHD	6392	MSKCC	GRCh37	11	111958699	111958699	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0015767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	74	693	0	ENST00000375549.3:c.169+2T>C		p.X57_splice	ENST00000375549	NM_003002.3	57																																																																																
MLL	4297	MSKCC	GRCh37	11	118366456	118366456	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	52	492	0	ENST00000534358.1:c.5405A>G	p.Asp1802Gly	p.D1802G	ENST00000534358	NM_005933.3	1802	gAc/gGc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9928076	9928076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	45	475	0	ENST00000330684.3:c.1663G>A	p.Ala555Thr	p.A555T	ENST00000330684	NM_001134407.1	555	Gcc/Acc																																																																															
TCEB1	6921	MSKCC	GRCh37	8	74858992	74858992	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	65	301	0	ENST00000284811.8:c.212C>A	p.Ser71Ter	p.S71*	ENST00000284811		71	tCg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	27	534	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578399	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGG	GGTGG	-			P-0015771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	26	612	0	ENST00000269305.4:c.531_535del	p.His178Ter	p.H178*	ENST00000269305	NM_001126112.2	177	ccCCACCat/ccat																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880997	37880998	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TGT			P-0015774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	178	874	0	ENST00000269571.5:c.2326_2327insTGT	p.Gly776delinsValCys	p.G776delinsVC	ENST00000269571		776	ggt/gTGTgt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57857812	57857812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	137	955	2	ENST00000228682.2:c.131C>T	p.Ala44Val	p.A44V	ENST00000228682	NM_005269.2	44	gCt/gTt																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66679698	66679698	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0015774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	104	762	0	ENST00000307102.5:c.13A>T	p.Lys5Ter	p.K5*	ENST00000307102	NM_002755.3	5	Aag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0015775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	318	612	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
APC	324	MSKCC	GRCh37	5	112116517	112116517	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	159	453	0	ENST00000257430.4:c.562C>T	p.Gln188Ter	p.Q188*	ENST00000257430	NM_000038.5	188	Caa/Taa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913324		P-0015780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	414	702	0	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	398	622	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28609742	28609742	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	443	742	0	ENST00000241453.7:c.1487T>G	p.Val496Gly	p.V496G	ENST00000241453	NM_004119.2	496	gTg/gGg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095840	178095898	+	frameshift_variant	Frame_Shift_Del	DEL	TAATGCAAGTTGAGCTTCATTGAACTGCTCTTTGGACATCATTTCGTTGAAGTCAACAA	TAATGCAAGTTGAGCTTCATTGAACTGCTCTTTGGACATCATTTCGTTGAAGTCAACAA	-			P-0015780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	72	495	0	ENST00000397062.3:c.1433_1491delTTGTTGACTTCAACGAAATGATGTCCAAAGAGCAGTTCAATGAAGCTCAACTTGCATTA	p.Val478AspfsTer6	p.V478Dfs*6	ENST00000397062	NM_006164.4	478	gTTGTTGACTTCAACGAAATGATGTCCAAAGAGCAGTTCAATGAAGCTCAACTTGCATTA/g																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31508847	31508847	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1214	100	596	0	ENST00000344624.3:c.1468G>T	p.Asp490Tyr	p.D490Y	ENST00000344624		490	Gac/Tac																																																																															
MET	4233	MSKCC	GRCh37	7	116339299	116339299	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	174	523	0	ENST00000397752.3:c.161A>T	p.Asn54Ile	p.N54I	ENST00000397752	NM_000245.2	54	aAt/aTt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5078309	5078309	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	115	403	0	ENST00000381652.3:c.1996G>T	p.Glu666Ter	p.E666*	ENST00000381652	NM_004972.3	666	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	188	552	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0015781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	427	797	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633395	3633395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	413	909	1	ENST00000294008.3:c.4856C>T	p.Pro1619Leu	p.P1619L	ENST00000294008	NM_032444.2	1619	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175762	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0015781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	122	361	0	ENST00000257430.4:c.4472_4473delTT	p.Phe1491CysfsTer22	p.F1491Cfs*22	ENST00000257430	NM_000038.5	1490	caTTtt/catt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0015782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	256	852	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175600	112175600	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	405	635	0	ENST00000257430.4:c.4312delA	p.Thr1438HisfsTer35	p.T1438Hfs*35	ENST00000257430	NM_000038.5	1437	Aaa/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0015782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	142	607	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330537	65330537	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	329	663	0	ENST00000342505.4:c.1109delC	p.Pro370LeufsTer7	p.P370Lfs*7	ENST00000342505	NM_002227.2	370	cCt/ct																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30108091	30108091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80271647		P-0015782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	352	718	0	ENST00000331968.5:c.716C>T	p.Ser239Leu	p.S239L	ENST00000331968	NM_002742.2	239	tCg/tTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991866	72991866	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201721439		P-0015782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	736	904	2	ENST00000268489.5:c.2179C>T	p.Arg727Cys	p.R727C	ENST00000268489	NM_006885.3	727	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0015782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	409	868	0	ENST00000269305.4:c.672+1delG		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
TOP1	7150	MSKCC	GRCh37	20	39690102	39690102	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1687	149	673	0	ENST00000361337.2:c.127G>C	p.Asp43His	p.D43H	ENST00000361337	NM_003286.2	43	Gac/Cac																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729658	41729658	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	129	571	1	ENST00000242208.4:c.871C>A	p.Pro291Thr	p.P291T	ENST00000242208	NM_002192.2	291	Cct/Act																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245325	53245325	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	444	785	0	ENST00000375401.3:c.712A>G	p.Ile238Val	p.I238V	ENST00000375401	NM_004187.3	238	Atc/Gtc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	80	538	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	292	711	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78867533	78867533	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185118480		P-0015783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	263	616	0	ENST00000306801.3:c.2269G>A	p.Gly757Arg	p.G757R	ENST00000306801	NM_020761.2	757	Gga/Aga																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266010	41266578	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTG	TTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTG	-			P-0015783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	112	255	0	ENST00000349496.5:c.14-7_375delTTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTG		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41277264	41277264	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	222	504	0	ENST00000349496.5:c.1733A>G	p.His578Arg	p.H578R	ENST00000349496	NM_001904.3	578	cAc/cGc																																																																															
SDHB	6390	MSKCC	GRCh37	1	17355201	17355201	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	168	704	0	ENST00000375499.3:c.317A>G	p.Asn106Ser	p.N106S	ENST00000375499	NM_003000.2	106	aAt/aGt																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514038	69514038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	361	582	0	ENST00000294312.3:c.643G>A	p.Glu215Lys	p.E215K	ENST00000294312	NM_005117.2	215	Gag/Aag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18716386	18716386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1179	346	638	0	ENST00000266497.5:c.3733C>A	p.Leu1245Ile	p.L1245I	ENST00000266497		1245	Ctt/Att																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	490	635	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121437296	121437296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1445	319	904	1	ENST00000257555.6:c.1634C>T	p.Ser545Leu	p.S545L	ENST00000257555		545	tCa/tTa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73336073	73336073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	141	275	0	ENST00000377767.4:c.2330C>T	p.Ser777Leu	p.S777L	ENST00000377767	NM_014953.3	777	tCa/tTa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89882998	89882998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	95	393	0	ENST00000389301.3:c.26C>T	p.Ser9Phe	p.S9F	ENST00000389301	NM_000135.2	9	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7572962	7572974	+	frameshift_variant	Frame_Shift_Del	DEL	GTTTTTTATGGCG	GTTTTTTATGGCG	-			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	296	574	0	ENST00000269305.4:c.1135_1147delCGCCATAAAAAAC	p.Arg379SerfsTer39	p.R379Sfs*39	ENST00000269305	NM_001126112.2	379	CGCCATAAAAAACtc/tc																																																																															
NF1	4763	MSKCC	GRCh37	17	29556877	29556877	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	72	396	0	ENST00000358273.4:c.2875C>T	p.Gln959Ter	p.Q959*	ENST00000358273	NM_001042492.2	959	Caa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604673	48604673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	316	460	0	ENST00000342988.3:c.1495T>C	p.Cys499Arg	p.C499R	ENST00000342988	NM_005359.5	499	Tgc/Cgc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190718761	190718761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	90	464	0	ENST00000441310.2:c.919G>A	p.Asp307Asn	p.D307N	ENST00000441310	NM_000534.4	307	Gat/Aat																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913500		P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	187	329	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735464	40735464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1245	503	741	0	ENST00000373198.4:c.3409G>A	p.Glu1137Lys	p.E1137K	ENST00000373198	NM_133170.3	1137	Gag/Aag																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42842606	42842606	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	173	734	0	ENST00000398585.3:c.1251G>A	p.Trp417Ter	p.W417*	ENST00000398585	NM_001135099.1	417	tgG/tgA																																																																															
SETD2	29072	MSKCC	GRCh37	3	47129600	47129600	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	79	589	0	ENST00000409792.3:c.5277+3G>A		p.X1759_splice	ENST00000409792	NM_014159.6	1759																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52598142	52598142	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	394	718	0	ENST00000394830.3:c.3724C>T	p.Gln1242Ter	p.Q1242*	ENST00000394830	NM_018313.4	1242	Cag/Tag																																																																															
ATR	545	MSKCC	GRCh37	3	142226925	142226925	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	126	662	0	ENST00000350721.4:c.4879C>T	p.Gln1627Ter	p.Q1627*	ENST00000350721	NM_001184.3	1627	Cag/Tag																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751931	57751931	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55768901		P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	304	618	0	ENST00000274289.3:c.1306G>A	p.Glu436Lys	p.E436K	ENST00000274289	NM_006622.3	436	Gaa/Aaa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681829	30681829	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	412	707	1	ENST00000376406.3:c.268C>T	p.Arg90Ter	p.R90*	ENST00000376406	NM_014641.2	90	Cga/Tga																																																																															
MET	4233	MSKCC	GRCh37	7	116339898	116339898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	132	589	0	ENST00000397752.3:c.760G>A	p.Glu254Lys	p.E254K	ENST00000397752	NM_000245.2	254	Gaa/Aaa																																																																															
MLL3	58508	MSKCC	GRCh37	7	151896396	151896396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	135	662	0	ENST00000262189.6:c.4241C>T	p.Ser1414Leu	p.S1414L	ENST00000262189	NM_170606.2	1414	tCa/tTa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68942825	68942825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1601	196	807	1	ENST00000288368.4:c.637G>A	p.Glu213Lys	p.E213K	ENST00000288368	NM_024870.2	213	Gag/Aag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465542	8465542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	413	775	0	ENST00000356435.5:c.3638G>A	p.Gly1213Glu	p.G1213E	ENST00000356435		1213	gGa/gAa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342695	87342695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	377	711	0	ENST00000277120.3:c.980C>T	p.Ser327Phe	p.S327F	ENST00000277120		327	tCc/tTc																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127915922	127915922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	163	706	1	ENST00000373547.4:c.559C>T	p.His187Tyr	p.H187Y	ENST00000373547	NM_002721.4	187	Cat/Tat																																																																															
MED12	9968	MSKCC	GRCh37	X	70341625	70341625	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	494	816	0	ENST00000374080.3:c.1060C>G	p.Gln354Glu	p.Q354E	ENST00000374080		354	Cag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577075	7577075	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	82	746	0	ENST00000269305.4:c.863delA	p.Asn288IlefsTer57	p.N288Ifs*57	ENST00000269305	NM_001126112.2	288	aAt/at																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088723	27088723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	97	672	0	ENST00000324856.7:c.2332G>A	p.Gly778Arg	p.G778R	ENST00000324856	NM_006015.4	778	Gga/Aga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0015790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	50	508	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	63	512	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0015790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	25	424	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
RB1	5925	MSKCC	GRCh37	13	49030486	49030486	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	63	344	2	ENST00000267163.4:c.1960+1G>A		p.X654_splice	ENST00000267163	NM_000321.2	654																																																																																
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0015790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	45	422	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	24	247	0	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0015790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	54	568	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	61	673	0	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																																																															
AKT1	207	MSKCC	GRCh37	14	105239419	105239419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	117	605	0	ENST00000349310.3:c.968A>G	p.Asp323Gly	p.D323G	ENST00000349310	NM_001014432.1	323	gAc/gGc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743611	46743757	+	splice_acceptor_variant,splice_donor_variant,frameshift_variant,stop_lost,intron_variant	Splice_Site	DEL	GTTTATCCTGGATGAAGCTAGCCTCAGTGACACACATGACAGGTGGGGAAGTGCCCTAACCATTATCTCTAAGCTACCCACACAGTAGGGAGATGGGATCTGTAGTGACTTCAGCTGTGCCTTCTGTCCCTAGGTTGCACTGCCGAC	GTTTATCCTGGATGAAGCTAGCCTCAGTGACACACATGACAGGTGGGGAAGTGCCCTAACCATTATCTCTAAGCTACCCACACAGTAGGGAGATGGGATCTGTAGTGACTTCAGCTGTGCCTTCTGTCCCTAGGTTGCACTGCCGAC	-			P-0015794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	59	629	1	ENST00000371975.4:c.1995_2050delTATCCTGGATGAAGCTAGCCTCAGTGACACACATGACAGGTGGGGAAGTGCCCTAACCATTATCTCTAAGCTACCCACACAGTAGGGAGATGGGATCTGTAGTGACTTCAGCTGTGCCTTCTGTCCCTAGGTTGCACTGCCGACGTT		p.X665_splice	ENST00000371975	NM_003579.3	665	ctGTTTATCCTGGATGAAGCTAGCCTCAGTGACACACATGACAGGTGGGGAAGTGCCCTAACCATTATCTCTAAGCTACCCACACAGTAGGGAGATGGGATCTGTAGTGACTTCAGCTGTGCCTTCTGTCCCTAGGTTGCACTGCCGACgt/ctgt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39250347	39250347	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	44	732	0	ENST00000402219.2:c.1222T>C	p.Tyr408His	p.Y408H	ENST00000402219	NM_005633.3	408	Tat/Cat																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982134	93982134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	39	377	1	ENST00000369303.4:c.1331C>T	p.Ser444Leu	p.S444L	ENST00000369303	NM_004440.3	444	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	686	637	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	352	597	0	ENST00000269305.4:c.994-1G>T		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
PIK3C3	5289	MSKCC	GRCh37	18	39567844	39567844	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	35	416	0	ENST00000262039.4:c.600A>C	p.Glu200Asp	p.E200D	ENST00000262039	NM_002647.2	200	gaA/gaC																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095913	178095914	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	69	500	0	ENST00000397062.3:c.1417dup	p.Ile473AsnfsTer3	p.I473Nfs*3	ENST00000397062	NM_006164.4	473	atc/aAtc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225422405	225422405	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	68	644	0	ENST00000264414.4:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000264414	NM_003590.4	79	Gaa/Caa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0015813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	13	636	1	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266611	198266611	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs755415626		P-0015813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	30	467	0	ENST00000335508.6:c.2225G>A	p.Gly742Asp	p.G742D	ENST00000335508	NM_012433.2	742	gGt/gAt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572186	64572186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	29	328	2	ENST00000337652.1:c.1468C>T	p.Arg490Trp	p.R490W	ENST00000337652	NM_130803.2	490	Cgg/Tgg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775597	9775597	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0015813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	37	456	0	ENST00000377346.4:c.142-2A>G		p.X48_splice	ENST00000377346	NM_005026.3	48																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71943789	71943789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	76	773	3	ENST00000298229.2:c.1832G>A	p.Arg611His	p.R611H	ENST00000298229	NM_001567.3	611	cGc/cAc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73335546	73335546	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	29	474	0	ENST00000377767.4:c.2625del	p.Phe875LeufsTer22	p.F875Lfs*22	ENST00000377767	NM_014953.3	875	ttT/tt																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813674	50813674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	103	955	2	ENST00000398568.2:c.1228G>A	p.Glu410Lys	p.E410K	ENST00000398568	NM_001042412.1	410	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	259	505	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610247	10610247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	441	761	0	ENST00000171111.5:c.463G>T	p.Val155Phe	p.V155F	ENST00000171111	NM_203500.1	155	Gtc/Ttc																																																																															
WT1	7490	MSKCC	GRCh37	11	32410650	32410650	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	291	503	0	ENST00000332351.3:c.1508A>T	p.His503Leu	p.H503L	ENST00000332351	NM_024426.4	503	cAc/cTc																																																																															
EED	8726	MSKCC	GRCh37	11	85956294	85956294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	122	213	0	ENST00000263360.6:c.23C>T	p.Thr8Ile	p.T8I	ENST00000263360	NM_003797.3	8	aCt/aTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221975	1221975	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	380	660	0	ENST00000326873.7:c.890G>C	p.Arg297Thr	p.R297T	ENST00000326873	NM_000455.4	297	aGg/aCg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25498374	25498374	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	260	377	0	ENST00000264709.3:c.487A>T	p.Met163Leu	p.M163L	ENST00000264709	NM_175629.2	163	Atg/Ttg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981671	70981671	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1585	165	781	0	ENST00000276594.2:c.425del	p.Pro142ArgfsTer8	p.P142Rfs*8	ENST00000276594	NM_024504.3	142	cCg/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782596		P-0015817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	42	626	1	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	383	627	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0015818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1215	283	712	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107135	27107136	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	499	593	0	ENST00000324856.7:c.6747dupA	p.Glu2250ArgfsTer28	p.E2250Rfs*28	ENST00000324856	NM_006015.4	2249	tca/tcAa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1962801	1962801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	226	548	0	ENST00000382891.5:c.3295G>A	p.Glu1099Lys	p.E1099K	ENST00000382891	NM_133335.3	1099	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578530	7578539	+	protein_altering_variant	In_Frame_Del	DEL	ACATCTTGTT	ACATCTTGTT	G			P-0015818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1205	359	1101	0	ENST00000269305.4:c.391_400delinsC	p.Asn131_Phe134delinsLeu	p.N131_F134delinsL	ENST00000269305	NM_001126112.2	131	AACAAGATGTtt/Ctt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	158	626	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0015820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	164	785	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0015835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	41	868	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0015835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	41	337	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41222997	41222997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	55	986	0	ENST00000357654.3:c.4934G>A	p.Arg1645Lys	p.R1645K	ENST00000357654	NM_007294.3	1645	aGg/aAg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554545	63554545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	31	609	0	ENST00000307078.5:c.194C>T	p.Pro65Leu	p.P65L	ENST00000307078	NM_004655.3	65	cCg/cTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151848013	151848013	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	29	425	0	ENST00000262189.6:c.12746C>A	p.Thr4249Asn	p.T4249N	ENST00000262189	NM_170606.2	4249	aCt/aAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692820	89692820	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			4	17	333	0	ENST00000371953.3:c.306delA	p.Lys102AsnfsTer11	p.K102Nfs*11	ENST00000371953	NM_000314.4	102	Aaa/aa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038878	12038878	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	34	590	0	ENST00000396373.4:c.1171T>G	p.Tyr391Asp	p.Y391D	ENST00000396373	NM_001987.4	391	Tat/Gat																																																																															
MGA	23269	MSKCC	GRCh37	15	42054498	42054498	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	13	656	1	ENST00000219905.7:c.7682T>A	p.Met2561Lys	p.M2561K	ENST00000219905	NM_001164273.1	2561	aTg/aAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0015837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	320	829	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0015837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	32	552	0	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0015837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	224	892	7	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118713	115118713	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	46	669	0	ENST00000257566.3:c.628A>G	p.Thr210Ala	p.T210A	ENST00000257566	NM_016569.3	210	Acc/Gcc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913920	32913920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	133	738	1	ENST00000380152.3:c.5428G>A	p.Val1810Ile	p.V1810I	ENST00000380152		1810	Gtt/Att																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060989	38060990	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTGGGGG			P-0015837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	67	371	1	ENST00000250448.2:c.993_999dup	p.Thr334ProfsTer83	p.T334Pfs*83	ENST00000250448	NM_004496.3	333	-/CCCCCAG																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829314	72829314	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	47	755	0	ENST00000268489.5:c.7267del	p.Thr2423GlnfsTer105	p.T2423Qfs*105	ENST00000268489	NM_006885.3	2423	Aca/ca																																																																															
CARM1	10498	MSKCC	GRCh37	19	11032336	11032336	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	155	851	0	ENST00000327064.4:c.1730A>C	p.His577Pro	p.H577P	ENST00000327064	NM_199141.1	577	cAc/cCc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273869	18273869	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	225	1014	0	ENST00000222254.8:c.1202T>G	p.Leu401Arg	p.L401R	ENST00000222254	NM_005027.3	401	cTc/cGc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37038181	37038181	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	84	467	0	ENST00000231790.2:c.188A>G	p.Asp63Gly	p.D63G	ENST00000231790	NM_000249.3	63	gAc/gGc																																																																															
MED12	9968	MSKCC	GRCh37	X	70356477	70356477	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	40	573	1	ENST00000374080.3:c.5372A>G	p.Lys1791Arg	p.K1791R	ENST00000374080		1791	aAa/aGa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	241	866	0	ENST00000347630.2:c.397T>A	p.Phe133Ile	p.F133I	ENST00000347630	NM_001007230.1	133	Ttc/Atc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	23	552	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	192	443	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	170	449	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	144	421	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	151	398	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	135	426	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	126	391	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	98	285	0	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851104	63851104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148232588		P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	217	498	0	ENST00000279873.7:c.1882G>A	p.Val628Met	p.V628M	ENST00000279873	NM_032199.2	628	Gtg/Atg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	243	777	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
PARP1	142	MSKCC	GRCh37	1	226573330	226573330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	176	474	1	ENST00000366794.5:c.886G>A	p.Glu296Lys	p.E296K	ENST00000366794	NM_001618.3	296	Gag/Aag																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563021	21563021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	252	696	2	ENST00000382592.4:c.898G>A	p.Ala300Thr	p.A300T	ENST00000382592	NM_014572.2	300	Gcc/Acc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119050	70119050	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	203	496	0	ENST00000245479.2:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000245479	NM_000346.3	208	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	42	549	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11210203	11210203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	438	492	0	ENST00000361445.4:c.4550C>T	p.Ala1517Val	p.A1517V	ENST00000361445	NM_004958.3	1517	gCt/gTt																																																																															
CASP8	841	MSKCC	GRCh37	2	202139625	202139626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	140	322	0	ENST00000358485.4:c.790dup	p.Val264GlyfsTer13	p.V264Gfs*13	ENST00000358485	NM_001080125.1	262	-/G																																																																															
CBFB	865	MSKCC	GRCh37	16	67063359	67063359	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	194	457	1	ENST00000412916.2:c.54del	p.Phe18LeufsTer4	p.F18Lfs*4	ENST00000412916		17	Ttt/tt																																																																															
NF1	4763	MSKCC	GRCh37	17	29654856	29654856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	75	206	0	ENST00000358273.4:c.5608C>T	p.Arg1870Trp	p.R1870W	ENST00000358273	NM_001042492.2	1870	Cgg/Tgg																																																																															
MGA	23269	MSKCC	GRCh37	15	42052633	42052633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	221	466	1	ENST00000219905.7:c.7304G>A	p.Arg2435Gln	p.R2435Q	ENST00000219905	NM_001164273.1	2435	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925318	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	76	402	0	ENST00000543371.1:c.1402_1403del	p.Lys468ValfsTer8	p.K468Vfs*8	ENST00000543371	NM_001198531.1	465	agAAaa/agaa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	294	739	1	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843515	156843515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	232	549	0	ENST00000524377.1:c.941G>A	p.Arg314His	p.R314H	ENST00000524377	NM_002529.3	314	cGc/cAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100762	8100762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	174	656	2	ENST00000346208.3:c.736G>A	p.Gly246Ser	p.G246S	ENST00000346208		246	Ggc/Agc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118371775	118371775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	152	380	0	ENST00000534358.1:c.6232C>T	p.Arg2078Cys	p.R2078C	ENST00000534358	NM_005933.3	2078	Cgt/Tgt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2224304	2224304	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	288	692	0	ENST00000326181.6:c.1316A>G	p.Asp439Gly	p.D439G	ENST00000326181	NM_032271.2	439	gAt/gGt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214675	5214675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	293	684	0	ENST00000357368.4:c.4391C>T	p.Thr1464Met	p.T1464M	ENST00000357368	NM_002850.3	1464	aCg/aTg																																																																															
AXL	558	MSKCC	GRCh37	19	41737096	41737096	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	64	688	1	ENST00000301178.4:c.676C>A	p.Gln226Lys	p.Q226K	ENST00000301178	NM_021913.4	226	Cag/Aag																																																																															
MSH2	4436	MSKCC	GRCh37	2	47690273	47690273	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	140	448	0	ENST00000233146.2:c.1490T>C	p.Ile497Thr	p.I497T	ENST00000233146	NM_000251.2	497	aTa/aCa																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62320897	62320897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	271	794	0	ENST00000508582.2:c.1993G>A	p.Val665Met	p.V665M	ENST00000508582		665	Gtg/Atg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37090393	37090393	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	158	377	0	ENST00000231790.2:c.1990-2A>G		p.X664_splice	ENST00000231790	NM_000249.3	664																																																																																
TP63	8626	MSKCC	GRCh37	3	189607255	189607255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	70	660	0	ENST00000264731.3:c.1634C>T	p.Thr545Ile	p.T545I	ENST00000264731	NM_003722.4	545	aCa/aTa																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519339	137519340	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	66	242	0	ENST00000367739.4:c.1298dup	p.Asn433LysfsTer2	p.N433Kfs*2	ENST00000367739	NM_000416.2	433	aat/aaAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240767	55240767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	247	701	0	ENST00000275493.2:c.2011C>T	p.Arg671Cys	p.R671C	ENST00000275493	NM_005228.3	671	Cgc/Tgc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69058536	69058536	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61753703		P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	183	604	0	ENST00000288368.4:c.4180C>T	p.Arg1394Trp	p.R1394W	ENST00000288368	NM_024870.2	1394	Cgg/Tgg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400044	139400044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	269	714	0	ENST00000277541.6:c.4304G>T	p.Gly1435Val	p.G1435V	ENST00000277541	NM_017617.3	1435	gGg/gTg																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652397	48652397	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	239	392	1	ENST00000376670.3:c.1073del	p.Pro358GlnfsTer74	p.P358Qfs*74	ENST00000376670	NM_002049.3	356	ggC/gg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934603	9934603	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747838255		P-0015852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	50	474	2	ENST00000330684.3:c.1552C>T	p.Arg518Cys	p.R518C	ENST00000330684	NM_001134407.1	518	Cgt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108175413	108175413	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	160	228	0	ENST00000278616.4:c.5508del	p.Cys1838ValfsTer8	p.C1838Vfs*8	ENST00000278616	NM_000051.3	1836	gaC/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	36	530	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974734	21974753	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCGCCCGCACCTCCTCTA	CAGCGCCCGCACCTCCTCTA	-			P-0015857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	31	320	0	ENST00000304494.5:c.74_93del	p.Val25AlafsTer12	p.V25Afs*12	ENST00000304494	NM_000077.4	25	gTAGAGGAGGTGCGGGCGCTG/g																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916644	178916665	+	protein_altering_variant	In_Frame_Del	DEL	TGGGGCATCCACTTGATGCCCC	TGGGGCATCCACTTGATGCCCC	GGGG			P-0015861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	58	346	2	ENST00000263967.3:c.31_52delinsGGGG	p.Trp11_Pro18delinsGlyAla	p.W11_P18delinsGA	ENST00000263967	NM_006218.2	11	TGGGGCATCCACTTGATGCCCCca/GGGGca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	341	513	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
STK11	6794	MSKCC	GRCh37	19	1220679	1220679	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	288	729	0	ENST00000326873.7:c.698del	p.Gly233AlafsTer54	p.G233Afs*54	ENST00000326873	NM_000455.4	233	Ggc/gc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602292	10602292	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	317	642	0	ENST00000171111.5:c.1286G>T	p.Gly429Val	p.G429V	ENST00000171111	NM_203500.1	429	gGc/gTc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17949085	17949085	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	248	661	0	ENST00000458235.1:c.1556A>G	p.Asp519Gly	p.D519G	ENST00000458235	NM_000215.3	519	gAc/gGc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55138589	55138589	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	136	563	0	ENST00000257290.5:c.1266T>A	p.Asp422Glu	p.D422E	ENST00000257290	NM_006206.4	422	gaT/gaA																																																																															
APC	324	MSKCC	GRCh37	5	112174736	112174736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	119	325	0	ENST00000257430.4:c.3445G>T	p.Glu1149Ter	p.E1149*	ENST00000257430	NM_000038.5	1149	Gaa/Taa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864478	162864478	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	127	467	0	ENST00000366898.1:c.35G>C	p.Gly12Ala	p.G12A	ENST00000366898	NM_004562.2	12	gGt/gCt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0015864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	220	655	2	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	117	469	1	ENST00000250448.2:c.781C>A	p.Arg261Ser	p.R261S	ENST00000250448	NM_004496.3	261	Cgc/Agc																																																																															
CDH1	999	MSKCC	GRCh37	16	68849604	68849604	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	199	675	0	ENST00000261769.5:c.1507C>T	p.Gln503Ter	p.Q503*	ENST00000261769	NM_004360.3	503	Cag/Tag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181878	56181878	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	51	353	0	ENST00000399503.3:c.4102A>G	p.Arg1368Gly	p.R1368G	ENST00000399503	NM_005921.1	1368	Aga/Gga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16049691	16049691	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0015865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	169	410	0	ENST00000268712.3:c.1081C>T	p.Arg361Ter	p.R361*	ENST00000268712	NM_006311.3	361	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	473	707	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683747	162683747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	144	513	1	ENST00000366898.1:c.222G>T	p.Trp74Cys	p.W74C	ENST00000366898	NM_004562.2	74	tgG/tgT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106662	27106662	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	169	573	0	ENST00000324856.7:c.6273G>A	p.Trp2091Ter	p.W2091*	ENST00000324856	NM_006015.4	2091	tgG/tgA																																																																															
KDM5A	5927	MSKCC	GRCh37	12	430249	430249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	107	375	0	ENST00000399788.2:c.2453G>A	p.Arg818Gln	p.R818Q	ENST00000399788	NM_001042603.1	818	cGg/cAg																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675245	40675245	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0015870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	34	497	0	ENST00000249776.8:c.209G>T	p.Gly70Val	p.G70V	ENST00000249776	NM_033286.3	70	gGg/gTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119808	70119808	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	234	704	2	ENST00000245479.2:c.811del	p.Arg271AlafsTer8	p.R271Afs*8	ENST00000245479	NM_000346.3	270	ttC/tt																																																																															
APC	324	MSKCC	GRCh37	5	112174475	112174475	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	71	264	0	ENST00000257430.4:c.3184del	p.Gln1062LysfsTer64	p.Q1062Kfs*64	ENST00000257430	NM_000038.5	1062	Caa/aa																																																																															
IRF4	3662	MSKCC	GRCh37	6	397163	397163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	135	464	1	ENST00000380956.4:c.548C>T	p.Pro183Leu	p.P183L	ENST00000380956	NM_001195286.1	183	cCg/cTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	147	468	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0015871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	104	670	1	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
CIC	23152	MSKCC	GRCh37	19	42795743	42795743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	107	842	0	ENST00000575354.2:c.2732C>T	p.Pro911Leu	p.P911L	ENST00000575354	NM_015125.3	911	cCg/cTg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259192	36259192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	87	704	0	ENST00000300305.3:c.299C>T	p.Ser100Phe	p.S100F	ENST00000300305		100	tCc/tTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	23	388	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	26	599	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0015883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	21	913	0	ENST00000269305.4:c.376T>G	p.Tyr126Asp	p.Y126D	ENST00000269305	NM_001126112.2	126	Tac/Gac																																																																															
RB1	5925	MSKCC	GRCh37	13	48951118	48951130	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAGAAATTTGC	AAGAGAAATTTGC	-			P-0015883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	40	473	0	ENST00000267163.4:c.1280_1292del	p.Lys427IlefsTer26	p.K427Ifs*26	ENST00000267163	NM_000321.2	427	aAAGAGAAATTTGCt/at																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828125	72828125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	47	761	1	ENST00000268489.5:c.8456C>T	p.Ser2819Phe	p.S2819F	ENST00000268489	NM_006885.3	2819	tCc/tTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573586	48573587	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0015883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	14	370	1	ENST00000342988.3:c.170_171del	p.Leu57TyrfsTer12	p.L57Yfs*12	ENST00000342988	NM_005359.5	57	tTA/t																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0015884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	453	687	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs926053251		P-0015884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	200	602	2	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	108	355	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469503	25469503	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	154	514	0	ENST00000264709.3:c.1265T>C	p.Leu422Pro	p.L422P	ENST00000264709	NM_175629.2	422	cTg/cCg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426808	121426808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	180	509	0	ENST00000257555.6:c.499G>A	p.Val167Ile	p.V167I	ENST00000257555		167	Gtc/Atc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29005327	29005327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	95	491	1	ENST00000282397.4:c.934C>T	p.Arg312Cys	p.R312C	ENST00000282397	NM_002019.4	312	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112174916	112174916	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	100	260	0	ENST00000257430.4:c.3625G>T	p.Glu1209Ter	p.E1209*	ENST00000257430	NM_000038.5	1209	Gaa/Taa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98221957	98221957	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	92	433	2	ENST00000331920.6:c.2812C>T	p.Gln938Ter	p.Q938*	ENST00000331920	NM_000264.3	938	Cag/Tag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391547	139391547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	362	754	1	ENST00000277541.6:c.6644C>T	p.Ser2215Leu	p.S2215L	ENST00000277541	NM_017617.3	2215	tCg/tTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0015893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	146	434	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs770248150		P-0015893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	243	430	0	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711874	89711874	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0015893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	114	334	1	ENST00000371953.3:c.493-1G>A		p.X165_splice	ENST00000371953	NM_000314.4	165																																																																																
PTEN	5728	MSKCC	GRCh37	10	89720853	89720854	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATACT			P-0015893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	119	296	0	ENST00000371953.3:c.1005_1009dup	p.Phe337TyrfsTer9	p.F337Yfs*9	ENST00000371953	NM_000314.4	335	cga/cgATACTa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604652	48604652	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	106	262	0	ENST00000342988.3:c.1474G>T	p.Val492Phe	p.V492F	ENST00000342988	NM_005359.5	492	Gtt/Ttt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274899	41274899	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	124	456	0	ENST00000349496.5:c.1149G>T	p.Trp383Cys	p.W383C	ENST00000349496	NM_001904.3	383	tgG/tgT																																																																															
BRAF	673	MSKCC	GRCh37	7	140453132	140453132	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	450	469	0	ENST00000288602.6:c.1803A>C	p.Lys601Asn	p.K601N	ENST00000288602	NM_004333.4	601	aaA/aaC																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133392	38133392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	94	252	0	ENST00000317025.8:c.4081G>A	p.Glu1361Lys	p.E1361K	ENST00000317025	NM_023034.1	1361	Gag/Aag																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87325683	87325683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	155	380	0	ENST00000277120.3:c.560C>T	p.Ala187Val	p.A187V	ENST00000277120		187	gCa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	262	523	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0015905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	116	370	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																															
AXL	558	MSKCC	GRCh37	19	41758774	41758774	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	46	625	3	ENST00000301178.4:c.1828C>T	p.Arg610Ter	p.R610*	ENST00000301178	NM_021913.4	610	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211778	36211778	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	72	669	0	ENST00000222270.7:c.1529G>C	p.Ser510Thr	p.S510T	ENST00000222270	NM_014727.1	510	aGt/aCt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267008	41267008	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	158	350	0	ENST00000349496.5:c.679G>T	p.Gly227Cys	p.G227C	ENST00000349496	NM_001904.3	227	Ggc/Tgc																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495642	72495678	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTACCTGGTGGAGGTGCCTTTCCTCACATCGCAGAT	AGTACCTGGTGGAGGTGCCTTTCCTCACATCGCAGAT	-			P-0015906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	83	321	0	ENST00000477973.2:c.392_423+5del		p.X131_splice	ENST00000477973	NM_012234.5	131																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	77	366	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458572	12458572	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	100	618	0	ENST00000287820.6:c.1189G>C	p.Glu397Gln	p.E397Q	ENST00000287820	NM_015869.4	397	Gag/Cag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0015908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1229	69	746	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	40	673	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575152	48575152	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	42	465	0	ENST00000342988.3:c.346C>G	p.Gln116Glu	p.Q116E	ENST00000342988	NM_005359.5	116	Cag/Gag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0015921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	135	405	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0015921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	249	476	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68353790	68353790	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	185	294	0	ENST00000487270.1:c.625C>G	p.Leu209Val	p.L209V	ENST00000487270	NM_133509.3	209	Ctt/Gtt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874470	151874470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	63	267	0	ENST00000262189.6:c.8068G>A	p.Asp2690Asn	p.D2690N	ENST00000262189	NM_170606.2	2690	Gat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	136	402	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0015924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	190	617	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
CIC	23152	MSKCC	GRCh37	19	42795066	42795066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	152	728	2	ENST00000575354.2:c.2146C>T	p.Arg716Trp	p.R716W	ENST00000575354	NM_015125.3	716	Cgg/Tgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884550	151884550	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0015924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	134	316	0	ENST00000262189.6:c.4805C>G	p.Ser1602Ter	p.S1602*	ENST00000262189	NM_170606.2	1602	tCa/tGa																																																																															
STK19	8859	MSKCC	GRCh37	6	31940490	31940490	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	73	846	0	ENST00000375331.2:c.523G>C	p.Val175Leu	p.V175L	ENST00000375331	NM_004197.1	175	Gtg/Ctg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603023	48603023	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	33	256	0	ENST00000342988.3:c.1324C>T	p.Gln442Ter	p.Q442*	ENST00000342988	NM_005359.5	442	Cag/Tag																																																																															
MET	4233	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0015926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	244	725	0	ENST00000397752.3:c.3028+2T>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
POLE	5426	MSKCC	GRCh37	12	133250250	133250250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	98	643	0	ENST00000320574.5:c.1270C>T	p.Leu424Phe	p.L424F	ENST00000320574	NM_006231.2	424	Ctc/Ttc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99192893	99192893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	50	389	0	ENST00000268035.6:c.83C>A	p.Thr28Lys	p.T28K	ENST00000268035	NM_000875.3	28	aCg/aAg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259470	89259470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	84	543	0	ENST00000336596.2:c.614C>A	p.Thr205Lys	p.T205K	ENST00000336596	NM_005233.5	205	aCa/aAa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149499126	149499126	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	70	509	0	ENST00000261799.4:c.2702G>T	p.Gly901Val	p.G901V	ENST00000261799	NM_002609.3	901	gGc/gTc																																																																															
MET	4233	MSKCC	GRCh37	7	116411566	116411567	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	108	315	0	ENST00000397752.3:c.2745_2746insG	p.Ser916ValfsTer47	p.S916Vfs*47	ENST00000397752	NM_000245.2	915	-/G																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	220	513	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0015927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	162	315	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717714	89717718	+	frameshift_variant	Frame_Shift_Del	DEL	TTACC	TTACC	-			P-0015927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	255	391	0	ENST00000371953.3:c.740_744del	p.Leu247CysfsTer4	p.L247Cfs*4	ENST00000371953	NM_000314.4	247	TTACCt/t																																																																															
RB1	5925	MSKCC	GRCh37	13	48939032	48939033	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	158	237	0	ENST00000267163.4:c.864_865insA	p.Asn290LysfsTer20	p.N290Kfs*20	ENST00000267163	NM_000321.2	288	-/A																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31322943	31322943	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	147	729	0	ENST00000412585.2:c.953T>G	p.Leu318Arg	p.L318R	ENST00000412585	NM_005514.6	318	cTa/cGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	302	587	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	76	452	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	105	684	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256568	16256568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	112	664	0	ENST00000375759.3:c.3833C>T	p.Ser1278Phe	p.S1278F	ENST00000375759	NM_015001.2	1278	tCc/tTc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175957441	175957441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	333	577	0	ENST00000367669.3:c.1955G>A	p.Gly652Glu	p.G652E	ENST00000367669	NM_022457.5	652	gGa/gAa																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2094797	2094797	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	120	565	1	ENST00000219066.1:c.383G>T	p.Arg128Leu	p.R128L	ENST00000219066	NM_002528.5	128	cGc/cTc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30312692	30312692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	99	662	1	ENST00000262643.3:c.673G>A	p.Glu225Lys	p.E225K	ENST00000262643	NM_001238.2	225	Gaa/Aaa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99172088	99172088	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	323	488	0	ENST00000074304.5:c.1654G>T	p.Glu552Ter	p.E552*	ENST00000074304	NM_001134224.1	552	Gag/Tag																																																																															
EP300	2033	MSKCC	GRCh37	22	41548306	41548306	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	184	536	1	ENST00000263253.7:c.3094A>T	p.Thr1032Ser	p.T1032S	ENST00000263253	NM_001429.3	1032	Act/Tct																																																																															
KDR	3791	MSKCC	GRCh37	4	55984897	55984897	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	164	571	0	ENST00000263923.4:c.232G>T	p.Glu78Ter	p.E78*	ENST00000263923	NM_002253.2	78	Gag/Tag																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143067044	143067044	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	77	515	0	ENST00000262992.4:c.1669G>C	p.Asp557His	p.D557H	ENST00000262992	NM_001101669.1	557	Gat/Cat																																																																															
IL7R	3575	MSKCC	GRCh37	5	35861077	35861077	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	79	434	0	ENST00000303115.3:c.206T>C	p.Leu69Pro	p.L69P	ENST00000303115	NM_002185.3	69	cTg/cCg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120283	94120283	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	50	337	0	ENST00000369303.4:c.768G>T	p.Trp256Cys	p.W256C	ENST00000369303	NM_004440.3	256	tgG/tgT																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983095	149983095	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	98	582	0	ENST00000253339.5:c.3163G>C	p.Glu1055Gln	p.E1055Q	ENST00000253339		1055	Gaa/Caa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845126	151845126	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	68	499	0	ENST00000262189.6:c.13886C>A	p.Ser4629Ter	p.S4629*	ENST00000262189	NM_170606.2	4629	tCa/tAa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371984	55371984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	137	655	2	ENST00000297316.4:c.674C>A	p.Ser225Tyr	p.S225Y	ENST00000297316	NM_022454.3	225	tCc/tAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69028091	69028091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1250	286	906	3	ENST00000288368.4:c.3250C>T	p.Arg1084Trp	p.R1084W	ENST00000288368	NM_024870.2	1084	Cgg/Tgg																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006014	22006014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	417	714	2	ENST00000276925.6:c.389G>T	p.Gly130Val	p.G130V	ENST00000276925	NM_004936.3	130	gGg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	186	792	1	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115755	8115879	+	frameshift_variant	Frame_Shift_Del	DEL	AATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTCCTCCCTGAGCCACATCTCGCCCT	AATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTCCTCCCTGAGCCACATCTCGCCCT	-			P-0015930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	104	670	0	ENST00000346208.3:c.1101_1225del	p.Lys367AsnfsTer98	p.K367Nfs*98	ENST00000346208		367	aaAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTCCTCCCTGAGCCACATCTCGCCCTtc/aatc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278093	41278093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	111	373	0	ENST00000349496.5:c.1969G>A	p.Ala657Thr	p.A657T	ENST00000349496	NM_001904.3	657	Gct/Act																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056999	180056999	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1237	191	878	0	ENST00000261937.6:c.620A>T	p.Glu207Val	p.E207V	ENST00000261937	NM_182925.4	207	gAg/gTg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248151	110248151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	152	455	0	ENST00000374672.4:c.1321G>T	p.Asp441Tyr	p.D441Y	ENST00000374672	NM_004235.4	441	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0015931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	319	880	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	240	776	1	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259141	36259141	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0015931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	222	599	0	ENST00000300305.3:c.350del	p.Lys117ArgfsTer5	p.K117Rfs*5	ENST00000300305		117	aAg/ag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44910951	44910951	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	C			P-0015931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	157	445	2	ENST00000377967.4:c.655-3T>C		p.X219_splice	ENST00000377967	NM_021140.2	219																																																																																
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0015932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	433	719	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023918	27023918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	55	136	0	ENST00000324856.7:c.1024G>C	p.Ala342Pro	p.A342P	ENST00000324856	NM_006015.4	342	Gcg/Ccg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746141	162746141	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	108	350	0	ENST00000367921.3:c.2264C>G	p.Ser755Cys	p.S755C	ENST00000367921	NM_006182.2	755	tCt/tGt																																																																															
TET1	80312	MSKCC	GRCh37	10	70333688	70333694	+	protein_altering_variant	In_Frame_Del	DEL	CCAACTC	CCAACTC	AAAT			P-0015932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	199	585	3	ENST00000373644.4:c.1593_1599delinsAAAT	p.Gln532_Leu533delinsAsn	p.Q532_L533delinsN	ENST00000373644	NM_030625.2	531	gcCCAACTC/gcAAAT																																																																															
GLI1	2735	MSKCC	GRCh37	12	57857787	57857799	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGGCCCGCCCT	TCTGGCCCGCCCT	-			P-0015932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	158	732	0	ENST00000228682.2:c.110_122del	p.Gly37AlafsTer37	p.G37Afs*37	ENST00000228682	NM_005269.2	36	TCTGGCCCGCCCTtc/tc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18956781	18956802	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCTGCAGGTTGGGCCCGAAGG	TGCTGCAGGTTGGGCCCGAAGG	-			P-0015932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	285	424	0	ENST00000262803.5:c.232-8_245del		p.X78_splice	ENST00000262803	NM_002911.3	78																																																																																
FAT1	2195	MSKCC	GRCh37	4	187554880	187554911	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGTTGTAGTTTGACTTCTGTTCTGCATCAA	GAGGTTGTAGTTTGACTTCTGTTCTGCATCAA	-			P-0015932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	102	612	0	ENST00000441802.2:c.4250_4281del	p.Leu1417HisfsTer24	p.L1417Hfs*24	ENST00000441802	NM_005245.3	1417	cTTGATGCAGAACAGAAGTCAAACTACAACCTC/c																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793221	139793221	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	119	790	1	ENST00000247668.2:c.29G>T	p.Gly10Val	p.G10V	ENST00000247668	NM_021138.3	10	gGc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	239	586	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259161	36259161	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	228	660	0	ENST00000300305.3:c.330G>T	p.Lys110Asn	p.K110N	ENST00000300305		110	aaG/aaT																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15965567	15965567	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	75	185	1	ENST00000268712.3:c.5239C>T	p.Arg1747Ter	p.R1747*	ENST00000268712	NM_006311.3	1747	Cga/Tga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682398	52682398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	78	489	0	ENST00000394830.3:c.775G>T	p.Ala259Ser	p.A259S	ENST00000394830	NM_018313.4	259	Gcc/Tcc																																																																															
ATRX	546	MSKCC	GRCh37	X	76829740	76829740	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	87	626	1	ENST00000373344.5:c.6301G>T	p.Glu2101Ter	p.E2101*	ENST00000373344	NM_000489.3	2101	Gaa/Taa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523498	106523498	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	65	354	0	ENST00000359195.3:c.2650G>C	p.Asp884His	p.D884H	ENST00000359195	NM_002649.2	884	Gac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	116	554	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
VTCN1	79679	MSKCC	GRCh37	1	117695853	117695853	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	133	722	1	ENST00000369458.3:c.584C>A	p.Ser195Tyr	p.S195Y	ENST00000369458	NM_024626.3	195	tCc/tAc																																																																															
TET1	80312	MSKCC	GRCh37	10	70333986	70333987	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	56	428	2	ENST00000373644.4:c.1891_1892delinsAA	p.Pro631Lys	p.P631K	ENST00000373644	NM_030625.2	631	CCa/AAa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123353319	123353319	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	118	699	1	ENST00000358487.5:c.13G>T	p.Gly5Cys	p.G5C	ENST00000358487	NM_000141.4	5	Ggt/Tgt																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518038	69518038	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	83	599	0	ENST00000294312.3:c.327G>T	p.Met109Ile	p.M109I	ENST00000294312	NM_005117.2	109	atG/atT																																																																															
POLE	5426	MSKCC	GRCh37	12	133244161	133244162	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	96	569	3	ENST00000320574.5:c.2246_2247delinsTT	p.Arg749Leu	p.R749L	ENST00000320574	NM_006231.2	749	cGG/cTT																																																																															
POLE	5426	MSKCC	GRCh37	12	133253182	133253182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	133	604	0	ENST00000320574.5:c.859G>T	p.Asp287Tyr	p.D287Y	ENST00000320574	NM_006231.2	287	Gat/Tat																																																																															
RAD51	5888	MSKCC	GRCh37	15	41011048	41011048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	222	672	1	ENST00000267868.3:c.481G>A	p.Asp161Asn	p.D161N	ENST00000267868	NM_002875.4	161	Gac/Aac																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476311	88476311	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	320	733	0	ENST00000360948.2:c.1821C>A	p.Cys607Ter	p.C607*	ENST00000360948	NM_001012338.2	607	tgC/tgA																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678454	88678454	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	375	675	0	ENST00000360948.2:c.1082G>T	p.Gly361Val	p.G361V	ENST00000360948	NM_001012338.2	361	gGc/gTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29550464	29550464	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	33	212	0	ENST00000358273.4:c.1724C>G	p.Ser575Ter	p.S575*	ENST00000358273	NM_001042492.2	575	tCa/tGa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39570486	39570486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	27	287	0	ENST00000262039.4:c.682G>A	p.Asp228Asn	p.D228N	ENST00000262039	NM_002647.2	228	Gat/Aat																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600362	10600362	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	139	726	0	ENST00000171111.5:c.1493G>C	p.Arg498Pro	p.R498P	ENST00000171111	NM_203500.1	498	cGa/cCa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143981	11143981	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	82	487	0	ENST00000344626.4:c.3562G>T	p.Asp1188Tyr	p.D1188Y	ENST00000344626	NM_003072.3	1188	Gac/Tac																																																																															
CENPA	1058	MSKCC	GRCh37	2	27016124	27016124	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	86	444	1	ENST00000335756.4:c.400G>T	p.Gly134Cys	p.G134C	ENST00000335756	NM_001809.3	134	Ggc/Tgc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561051	9561051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	44	334	0	ENST00000353224.5:c.731G>A	p.Gly244Glu	p.G244E	ENST00000353224	NM_177990.2	244	gGg/gAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739097	40739097	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	76	573	0	ENST00000373198.4:c.3187del	p.Leu1063SerfsTer37	p.L1063Sfs*37	ENST00000373198	NM_133170.3	1063	Ctc/tc																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182253	38182253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	53	407	0	ENST00000396334.3:c.689G>T	p.Arg230Leu	p.R230L	ENST00000396334	NM_002468.4	230	cGc/cTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66242743	66242743	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	84	499	0	ENST00000273854.3:c.1829G>T	p.Cys610Phe	p.C610F	ENST00000273854	NM_004439.5	610	tGc/tTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187519147	187519147	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	77	580	0	ENST00000441802.2:c.12236G>T	p.Arg4079Ile	p.R4079I	ENST00000441802	NM_005245.3	4079	aGa/aTa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874575	35874575	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	80	543	0	ENST00000303115.3:c.731C>A	p.Thr244Asn	p.T244N	ENST00000303115	NM_002185.3	244	aCc/aAc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523073	176523073	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	95	620	0	ENST00000292408.4:c.1837C>A	p.Leu613Met	p.L613M	ENST00000292408	NM_213647.1	613	Ctg/Atg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453115	140453115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	93	577	0	ENST00000288602.6:c.1820C>T	p.Ser607Phe	p.S607F	ENST00000288602	NM_004333.4	607	tCc/tTc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69058572	69058572	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1140	111	719	0	ENST00000288368.4:c.4216G>T	p.Val1406Phe	p.V1406F	ENST00000288368	NM_024870.2	1406	Gtt/Ttt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570209	87570209	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	44	263	0	ENST00000277120.3:c.1949C>A	p.Pro650His	p.P650H	ENST00000277120		650	cCt/cAt																																																																															
XIAP	331	MSKCC	GRCh37	X	123025090	123025090	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0015934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	50	547	0	ENST00000355640.3:c.980G>T	p.Cys327Phe	p.C327F	ENST00000355640		327	tGc/tTc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0015935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	272	522	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	299	600	1	ENST00000269305.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTc/aCc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65349082	65349082	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	265	532	0	ENST00000342505.4:c.83A>G	p.Asn28Ser	p.N28S	ENST00000342505	NM_002227.2	28	aAc/aGc																																																																															
ATM	472	MSKCC	GRCh37	11	108119831	108119831	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0015935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	123	303	0	ENST00000278616.4:c.1235+2T>C		p.X412_splice	ENST00000278616	NM_000051.3	412																																																																																
PRKD1	5587	MSKCC	GRCh37	14	30108064	30108064	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	360	707	1	ENST00000331968.5:c.743A>T	p.Asn248Ile	p.N248I	ENST00000331968	NM_002742.2	248	aAt/aTt																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029140	14029140	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	160	347	0	ENST00000311895.7:c.1351A>G	p.Met451Val	p.M451V	ENST00000311895	NM_005236.2	451	Atg/Gtg																																																																															
CDH1	999	MSKCC	GRCh37	16	68853188	68853188	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	255	515	1	ENST00000261769.5:c.1571G>T	p.Arg524Leu	p.R524L	ENST00000261769	NM_004360.3	524	cGg/cTg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696721	47696721	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	212	502	0	ENST00000347630.2:c.227T>C	p.Leu76Ser	p.L76S	ENST00000347630	NM_001007230.1	76	tTa/tCa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295745	212295745	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	292	583	1	ENST00000342788.4:c.2568T>A	p.His856Gln	p.H856Q	ENST00000342788	NM_005235.2	856	caT/caA																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164569	36164569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	248	528	0	ENST00000300305.3:c.1306T>C	p.Ser436Pro	p.S436P	ENST00000300305		436	Tcc/Ccc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449829	149449829	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	342	907	1	ENST00000286301.3:c.1235A>G	p.Asn412Ser	p.N412S	ENST00000286301	NM_005211.3	412	aAc/aGc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	184	665	0	ENST00000326873.7:c.842dup	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggCc																																																																															
APC	324	MSKCC	GRCh37	5	112174502	112174502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	103	392	0	ENST00000257430.4:c.3211C>T	p.Gln1071Ter	p.Q1071*	ENST00000257430	NM_000038.5	1071	Caa/Taa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346880	89346880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	14	214	0	ENST00000301030.4:c.6070C>T	p.Pro2024Ser	p.P2024S	ENST00000301030	NM_001256183.1	2024	Ccg/Tcg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600005	10600005	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	259	712	0	ENST00000171111.5:c.1571del	p.Gly524AlafsTer8	p.G524Afs*8	ENST00000171111	NM_203500.1	524	gGc/gc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219958	36219958	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	182	519	0	ENST00000222270.7:c.4760A>T	p.Tyr1587Phe	p.Y1587F	ENST00000222270	NM_014727.1	1587	tAc/tTc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902742	50902742	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	221	758	1	ENST00000440232.2:c.316+1G>A		p.X106_splice	ENST00000440232	NM_002691.3	106																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0015937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	1669	733	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0015937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	122	635	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858738	9858738	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149698593		P-0015937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	24	324	0	ENST00000330684.3:c.2663C>T	p.Thr888Met	p.T888M	ENST00000330684	NM_001134407.1	888	aCg/aTg																																																																															
RET	5979	MSKCC	GRCh37	10	43606826	43606826	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	30	854	0	ENST00000355710.3:c.1435G>C	p.Ala479Pro	p.A479P	ENST00000355710	NM_020975.4	479	Gcc/Ccc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120787	115120787	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	34	617	0	ENST00000257566.3:c.219G>C	p.Glu73Asp	p.E73D	ENST00000257566	NM_016569.3	73	gaG/gaC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911939	32911939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	26	612	0	ENST00000380152.3:c.3447G>A	p.Met1149Ile	p.M1149I	ENST00000380152		1149	atG/atA																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138426001	138426003	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTT	CTT	-			P-0015937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	16	444	0	ENST00000289153.2:c.1528_1530del	p.Lys510del	p.K510del	ENST00000289153	NM_006219.2	510	AAG/-																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540391	187540391	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0015937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	26	480	0	ENST00000441802.2:c.7349C>G	p.Ser2450Ter	p.S2450*	ENST00000441802	NM_005245.3	2450	tCa/tGa																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821517	32821517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	27	857	1	ENST00000354258.4:c.77C>T	p.Pro26Leu	p.P26L	ENST00000354258	NM_000593.5	26	cCa/cTa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157511219	157511219	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	29	729	1	ENST00000346085.5:c.3737C>A	p.Ser1246Ter	p.S1246*	ENST00000346085	NM_020732.3	1246	tCa/tAa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500790	8500790	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	52	459	0	ENST00000356435.5:c.2092G>C	p.Glu698Gln	p.E698Q	ENST00000356435		698	Gag/Cag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923169	39923169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	18	563	1	ENST00000378444.4:c.3539C>T	p.Ser1180Phe	p.S1180F	ENST00000378444	NM_001123385.1	1180	tCt/tTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	82	535	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SUFU	51684	MSKCC	GRCh37	10	104263935	104263935	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	10	193	2	ENST00000369902.3:c.30del	p.Gly11AlafsTer85	p.G11Afs*85	ENST00000369902	NM_016169.3	9	gCc/gc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864757	57864757	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138157845		P-0015938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	83	683	2	ENST00000228682.2:c.2234C>T	p.Ala745Val	p.A745V	ENST00000228682	NM_005269.2	745	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	66	500	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0015939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1278	228	632	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998774	100998774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1227	87	612	0	ENST00000325455.5:c.1028G>A	p.Arg343Gln	p.R343Q	ENST00000325455	NM_001202474.3	343	cGg/cAg																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197253	26197253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	52	325	0	ENST00000356476.2:c.226G>A	p.Ala76Thr	p.A76T	ENST00000356476		76	Gcg/Acg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971118	21971118	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	180	466	0	ENST00000304494.5:c.240del	p.Val82CysfsTer64	p.V82Cfs*64	ENST00000304494	NM_000077.4	80	cgA/cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	90	411	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0015940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	104	444	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0015940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	74	302	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39537654	39537654	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	54	285	0	ENST00000262039.4:c.188T>C	p.Val63Ala	p.V63A	ENST00000262039	NM_002647.2	63	gTt/gCt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459759	149459759	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374166176		P-0015940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	89	501	2	ENST00000286301.3:c.448C>T	p.Arg150Cys	p.R150C	ENST00000286301	NM_005211.3	150	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	183	431	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	49	296	0	ENST00000342988.3:c.1051G>T	p.Asp351Tyr	p.D351Y	ENST00000342988	NM_005359.5	351	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0015946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	131	641	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480466	89480466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	66	244	1	ENST00000336596.2:c.2303C>T	p.Ser768Leu	p.S768L	ENST00000336596	NM_005233.5	768	tCg/tTg																																																																															
ATR	545	MSKCC	GRCh37	3	142281157	142281157	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	41	369	0	ENST00000350721.4:c.1087T>C	p.Ser363Pro	p.S363P	ENST00000350721	NM_001184.3	363	Tct/Cct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092710	27092710	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0015947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	51	349	0	ENST00000324856.7:c.2733-2A>T		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																																
PTEN	5728	MSKCC	GRCh37	10	89712011	89712012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	35	228	0	ENST00000371953.3:c.631dup	p.Cys211LeufsTer32	p.C211Lfs*32	ENST00000371953	NM_000314.4	210	act/acTt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346351	89346351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	40	434	0	ENST00000301030.4:c.6599C>T	p.Pro2200Leu	p.P2200L	ENST00000301030	NM_001256183.1	2200	cCt/cTt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259334	36259334	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	36	502	0	ENST00000300305.3:c.157A>G	p.Ser53Gly	p.S53G	ENST00000300305		53	Agc/Ggc																																																																															
CDH1	999	MSKCC	GRCh37	16	68847277	68847277	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	301	514	0	ENST00000261769.5:c.1199A>T	p.Asp400Val	p.D400V	ENST00000261769	NM_004360.3	400	gAt/gTt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0015950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	462	602	0	ENST00000269571.5:c.2331_2339dupGGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																																																															
RB1	5925	MSKCC	GRCh37	13	48953730	48953730	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs3092891		P-0015950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	131	179	2	ENST00000267163.4:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000267163	NM_000321.2	445	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0015950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	277	498	1	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100213	157100253	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCGGGGCCGCGAGCCTCAGCAAGGCGGCCGCCGGCTC	GGCGGCGGGGCCGCGAGCCTCAGCAAGGCGGCCGCCGGCTC	-			P-0015950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	82	53	0	ENST00000346085.5:c.1160_1200del	p.Ala387GlyfsTer134	p.A387Gfs*134	ENST00000346085	NM_020732.3	384	GGCGGCGGGGCCGCGAGCCTCAGCAAGGCGGCCGCCGGCTCg/g																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31394101	31394101	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	106	418	0	ENST00000328111.2:c.2388A>T	p.Lys796Asn	p.K796N	ENST00000328111	NM_006892.3	796	aaA/aaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	61	520	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	68	811	2	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243560	46243560	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	34	237	0	ENST00000334344.6:c.1912+1G>A		p.X638_splice	ENST00000334344	NM_152641.2	638																																																																																
GLI1	2735	MSKCC	GRCh37	12	57865223	57865223	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	60	717	0	ENST00000228682.2:c.2700T>G	p.Asn900Lys	p.N900K	ENST00000228682	NM_005269.2	900	aaT/aaG																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041755	29041755	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	21	259	0	ENST00000282397.4:c.65-1G>T		p.X22_splice	ENST00000282397	NM_002019.4	22																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	10274099	10274099	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	28	608	0	ENST00000330684.3:c.170C>G	p.Pro57Arg	p.P57R	ENST00000330684	NM_001134407.1	57	cCc/cGc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602785	10602785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	43	867	0	ENST00000171111.5:c.793C>T	p.Gln265Ter	p.Q265*	ENST00000171111	NM_203500.1	265	Cag/Tag																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197795	123197795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	36	552	0	ENST00000218089.9:c.1919G>T	p.Cys640Phe	p.C640F	ENST00000218089	NM_001042749.1	640	tGt/tTt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	61	503	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	12	118	1	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716352	52716352	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	389	482	0	ENST00000322088.6:c.796A>C	p.Lys266Gln	p.K266Q	ENST00000322088	NM_014225.5	266	Aag/Cag																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250242	110250242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	439	600	1	ENST00000374672.4:c.433C>T	p.Pro145Ser	p.P145S	ENST00000374672	NM_004235.4	145	Ccc/Tcc																																																																															
CDH1	999	MSKCC	GRCh37	16	68844193	68844193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	159	709	2	ENST00000261769.5:c.781G>A	p.Glu261Lys	p.E261K	ENST00000261769	NM_004360.3	261	Gaa/Aaa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3652147	3652147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	130	881	3	ENST00000294008.3:c.922G>A	p.Val308Met	p.V308M	ENST00000294008	NM_032444.2	308	Gtg/Atg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59876520	59876520	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	151	576	0	ENST00000259008.2:c.1281C>A	p.Asn427Lys	p.N427K	ENST00000259008	NM_032043.2	427	aaC/aaA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535378	66535378	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	163	869	0	ENST00000273854.3:c.83T>A	p.Leu28Gln	p.L28Q	ENST00000273854	NM_004439.5	28	cTg/cAg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061313	38061313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1214	547	781	0	ENST00000250448.2:c.676G>A	p.Asp226Asn	p.D226N	ENST00000250448	NM_004496.3	226	Gac/Aac																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99460053	99460053	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	68	454	0	ENST00000268035.6:c.2149G>C	p.Glu717Gln	p.E717Q	ENST00000268035	NM_000875.3	717	Gaa/Caa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589606	67589611	+	inframe_deletion	In_Frame_Del	DEL	CAAGAA	CAAGAA	-			P-0015960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	113	286	0	ENST00000274335.5:c.1369_1374del	p.Gln457_Glu458del	p.Q457_E458del	ENST00000274335		457	CAAGAA/-																																																																															
TEK	7010	MSKCC	GRCh37	9	27202925	27202925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1390	155	466	0	ENST00000380036.4:c.2017C>T	p.Arg673Cys	p.R673C	ENST00000380036	NM_000459.3	673	Cgt/Tgt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775719	9775719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1155	88	613	0	ENST00000377346.4:c.262C>A	p.Arg88Ser	p.R88S	ENST00000377346	NM_005026.3	88	Cgt/Agt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	251	585	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	207	499	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	334	354	1	ENST00000263967.3:c.3012G>A	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atA																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770065	56770065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	116	463	0	ENST00000337432.4:c.61C>T	p.Pro21Ser	p.P21S	ENST00000337432	NM_058216.2	21	Cca/Tca																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175891	176175891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	31	145	0	ENST00000367669.3:c.224C>T	p.Ser75Leu	p.S75L	ENST00000367669	NM_022457.5	75	tCg/tTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114901023	114901023	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	239	584	0	ENST00000543371.1:c.633C>A	p.Phe211Leu	p.F211L	ENST00000543371	NM_001198531.1	211	ttC/ttA																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56494962	56494962	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	204	441	0	ENST00000267101.3:c.3319G>C	p.Glu1107Gln	p.E1107Q	ENST00000267101	NM_001982.3	1107	Gag/Cag																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987165	36987165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	145	756	0	ENST00000354822.5:c.524C>T	p.Ser175Leu	p.S175L	ENST00000354822	NM_001079668.2	175	tCg/tTg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39595513	39595513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	152	327	1	ENST00000262039.4:c.1399G>A	p.Asp467Asn	p.D467N	ENST00000262039	NM_002647.2	467	Gat/Aat																																																																															
GNA11	2767	MSKCC	GRCh37	19	3094724	3094724	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	173	527	0	ENST00000078429.4:c.75C>G	p.Ile25Met	p.I25M	ENST00000078429	NM_002067.2	25	atC/atG																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660992	227660992	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	291	410	1	ENST00000305123.5:c.2463C>A	p.Cys821Ter	p.C821*	ENST00000305123	NM_005544.2	821	tgC/tgA																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662172	227662172	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	390	586	2	ENST00000305123.5:c.1283C>A	p.Ser428Ter	p.S428*	ENST00000305123	NM_005544.2	428	tCg/tAg																																																																															
ATR	545	MSKCC	GRCh37	3	142218544	142218544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	215	349	0	ENST00000350721.4:c.5305G>A	p.Glu1769Lys	p.E1769K	ENST00000350721	NM_001184.3	1769	Gaa/Aaa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38952478	38952478	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	122	276	0	ENST00000357387.3:c.2947G>C	p.Asp983His	p.D983H	ENST00000357387	NM_152756.3	983	Gat/Cat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56176561	56176561	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	301	355	0	ENST00000399503.3:c.2111C>G	p.Ser704Ter	p.S704*	ENST00000399503	NM_005921.1	704	tCa/tGa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031939	26031939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	169	291	0	ENST00000244661.2:c.350G>A	p.Arg117Gln	p.R117Q	ENST00000244661	NM_003537.3	117	cGa/cAa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679733	30679733	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	240	484	1	ENST00000376406.3:c.1986G>T	p.Gln662His	p.Q662H	ENST00000376406	NM_014641.2	662	caG/caT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965690	93965690	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	336	430	2	ENST00000369303.4:c.2238G>C	p.Met746Ile	p.M746I	ENST00000369303	NM_004440.3	746	atG/atC																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976761	2976761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	78	739	1	ENST00000396946.4:c.1251G>A	p.Met417Ile	p.M417I	ENST00000396946	NM_032415.4	417	atG/atA																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975403	13975403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	176	405	1	ENST00000405192.2:c.484G>T	p.Asp162Tyr	p.D162Y	ENST00000405192	NM_001163147.1	162	Gac/Tac																																																																															
RAD21	5885	MSKCC	GRCh37	8	117862873	117862875	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1253	246	381	0	ENST00000297338.2:c.1602_1604del	p.Glu534del	p.E534del	ENST00000297338	NM_006265.2	534	gaAGAt/gat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	438	644	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220644	1220644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	671	814	0	ENST00000326873.7:c.662C>T	p.Pro221Leu	p.P221L	ENST00000326873	NM_000455.4	221	cCg/cTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296182	15296182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	205	709	0	ENST00000263388.2:c.2182C>T	p.Arg728Cys	p.R728C	ENST00000263388	NM_000435.2	728	Cgc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108141777	108141843	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCTACCATCTTAGTATCTAATGCTTTTAAAGGAGCTTCCTGGAGAAGAGTACCCCTTGCCAATGGA	TCCTACCATCTTAGTATCTAATGCTTTTAAAGGAGCTTCCTGGAGAAGAGTACCCCTTGCCAATGGA	-			P-0015970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	67	411	0	ENST00000278616.4:c.2839-14_2891delTCCTACCATCTTAGTATCTAATGCTTTTAAAGGAGCTTCCTGGAGAAGAGTACCCCTTGCCAATGGA		p.X947_splice	ENST00000278616	NM_000051.3	947																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40748601	40748601	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	98	412	0	ENST00000373198.4:c.2915G>T	p.Arg972Leu	p.R972L	ENST00000373198	NM_133170.3	972	cGa/cTa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439247	52439247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	135	638	0	ENST00000460680.1:c.995C>T	p.Pro332Leu	p.P332L	ENST00000460680	NM_004656.3	332	cCc/cTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361106	66361106	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0015970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	139	329	0	ENST00000273854.3:c.1066A>G	p.Arg356Gly	p.R356G	ENST00000273854	NM_004439.5	356	Aga/Gga																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93964382	93964382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	104	482	0	ENST00000369303.4:c.2515G>A	p.Asp839Asn	p.D839N	ENST00000369303	NM_004440.3	839	Gac/Aac																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430818	78430818	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	170	679	0	ENST00000370768.2:c.571A>C	p.Met191Leu	p.M191L	ENST00000370768	NM_003902.3	191	Atg/Ctg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	140	644	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	151	531	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581195	48581195	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	112	520	1	ENST00000342988.3:c.499G>T	p.Glu167Ter	p.E167*	ENST00000342988	NM_005359.5	167	Gag/Tag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0015981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	30	410	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106138	27106138	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	73	464	0	ENST00000324856.7:c.5749A>G	p.Thr1917Ala	p.T1917A	ENST00000324856	NM_006015.4	1917	Act/Gct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692780	89692780	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0015981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	87	505	0	ENST00000371953.3:c.264T>A	p.Tyr88Ter	p.Y88*	ENST00000371953	NM_000314.4	88	taT/taA																																																																															
CDH1	999	MSKCC	GRCh37	16	68835622	68835622	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	75	564	0	ENST00000261769.5:c.213delC	p.Asp72ThrfsTer11	p.D72Tfs*11	ENST00000261769	NM_004360.3	71	ctC/ct																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332914	152332914	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	58	294	0	ENST00000206249.3:c.1220A>T	p.Asn407Ile	p.N407I	ENST00000206249	NM_000125.3	407	aAc/aTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	1350	763	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220395	1220395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	886	674	2	ENST00000326873.7:c.488G>T	p.Gly163Val	p.G163V	ENST00000326873	NM_000455.4	163	gGc/gTc																																																																															
ATM	472	MSKCC	GRCh37	11	108158325	108158325	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0015987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	241	392	0	ENST00000278616.4:c.3994-2A>G		p.X1332_splice	ENST00000278616	NM_000051.3	1332																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89390971	89390971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	333	614	0	ENST00000336596.2:c.1037G>A	p.Ser346Asn	p.S346N	ENST00000336596	NM_005233.5	346	aGt/aAt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513470	149513470	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	393	686	0	ENST00000261799.4:c.733T>A	p.Phe245Ile	p.F245I	ENST00000261799	NM_002609.3	245	Ttc/Atc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039638	47039638	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	525	825	0	ENST00000329236.7:c.856C>T	p.Gln286Ter	p.Q286*	ENST00000329236	NM_001204466.1	286	Cag/Tag																																																																															
MED12	9968	MSKCC	GRCh37	X	70344860	70344860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	405	712	1	ENST00000374080.3:c.2090G>A	p.Gly697Asp	p.G697D	ENST00000374080		697	gGc/gAc																																																																															
BTK	695	MSKCC	GRCh37	X	100630303	100630303	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	155	243	0	ENST00000308731.7:c.-30-1G>T		p.X10_splice	ENST00000308731	NM_000061.2	10																																																																																
STAG2	10735	MSKCC	GRCh37	X	123179126	123179126	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	337	668	0	ENST00000218089.9:c.575A>T	p.Tyr192Phe	p.Y192F	ENST00000218089	NM_001042749.1	192	tAt/tTt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285041	15285041	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	1229	479	0	ENST00000263388.2:c.4574T>C	p.Leu1525Pro	p.L1525P	ENST00000263388	NM_000435.2	1525	cTg/cCg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959247	2959247	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	81	364	0	ENST00000396946.4:c.2270-1G>T		p.X757_splice	ENST00000396946	NM_032415.4	757																																																																																
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0015991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	86	243	1	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
AR	367	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2503	913	235	1	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																															
APC	324	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	200	488	0	ENST00000257430.4:c.4364delA	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306928	65306928	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0015991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	178	366	0	ENST00000342505.4:c.2649G>C	p.Glu883Asp	p.E883D	ENST00000342505	NM_002227.2	883	gaG/gaC																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99460038	99460038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	213	431	2	ENST00000268035.6:c.2134G>A	p.Glu712Lys	p.E712K	ENST00000268035	NM_000875.3	712	Gag/Aag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222383	2222383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	72	539	3	ENST00000398665.3:c.3215G>A	p.Arg1072His	p.R1072H	ENST00000398665	NM_032482.2	1072	cGt/cAt																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29099492	29099492	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0015993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	204	580	1	ENST00000328354.6:c.908+1G>A		p.X303_splice	ENST00000328354	NM_007194.3	303																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106509592	106509592	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	135	572	0	ENST00000359195.3:c.1586T>A	p.Leu529Gln	p.L529Q	ENST00000359195	NM_002649.2	529	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0016003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	16	704	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	80	420	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RHOA	387	MSKCC	GRCh37	3	49413010	49413010	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519952		P-0016003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	136	681	1	ENST00000418115.1:c.13C>T	p.Arg5Trp	p.R5W	ENST00000418115	NM_001664.2	5	Cgg/Tgg																																																																															
MED12	9968	MSKCC	GRCh37	X	70339254	70339254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	39	677	1	ENST00000374080.3:c.131G>A	p.Gly44Asp	p.G44D	ENST00000374080		44	gGt/gAt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075122	16075122	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	122	240	0	ENST00000268712.3:c.430A>T	p.Lys144Ter	p.K144*	ENST00000268712	NM_006311.3	144	Aag/Tag																																																																															
CDH1	999	MSKCC	GRCh37	16	68842656	68842657	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0016003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	135	683	0	ENST00000261769.5:c.597_598dup	p.Pro200HisfsTer16	p.P200Hfs*16	ENST00000261769	NM_004360.3	198	gac/gACac																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115710	8115711	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0016003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	66	556	0	ENST00000346208.3:c.1059_1060dup	p.Leu354ProfsTer2	p.L354Pfs*2	ENST00000346208		352	-/CC																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115416	115115416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	181	647	1	ENST00000257566.3:c.910C>T	p.Arg304Trp	p.R304W	ENST00000257566	NM_016569.3	304	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	330	523	4	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CBL	867	MSKCC	GRCh37	11	119148936	119148936	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	344	533	0	ENST00000264033.4:c.1156G>T	p.Glu386Ter	p.E386*	ENST00000264033	NM_005188.3	386	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579515	7579524	+	frameshift_variant	Frame_Shift_Del	DEL	GGTCTTCAGT	GGTCTTCAGT	-			P-0016007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	195	695	0	ENST00000269305.4:c.163_172del	p.Thr55GlnfsTer65	p.T55Qfs*65	ENST00000269305	NM_001126112.2	55	ACTGAAGACCca/ca																																																																															
MED12	9968	MSKCC	GRCh37	X	70339953	70339962	+	frameshift_variant	Frame_Shift_Del	DEL	GACCTGTGCC	GACCTGTGCC	-			P-0016007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	38	440	0	ENST00000374080.3:c.486_495del	p.Met162IlefsTer55	p.M162Ifs*55	ENST00000374080		162	atGACCTGTGCC/at																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	75	431	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0016009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	88	553	0	ENST00000269571.5:c.2331_2339dupGGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0016009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	119	660	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225346641	225346641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	38	363	0	ENST00000264414.4:c.1997C>T	p.Thr666Ile	p.T666I	ENST00000264414	NM_003590.4	666	aCa/aTa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0016011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	89	473	3	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	55	424	0	ENST00000342988.3:c.1067C>A	p.Pro356His	p.P356H	ENST00000342988	NM_005359.5	356	cCt/cAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5206802	5206802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	39	648	0	ENST00000357368.4:c.5830G>A	p.Asp1944Asn	p.D1944N	ENST00000357368	NM_002850.3	1944	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0016012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	392	485	1	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630303	187630303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	255	537	1	ENST00000441802.2:c.679C>T	p.Arg227Cys	p.R227C	ENST00000441802	NM_005245.3	227	Cgt/Tgt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118353158	118353158	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	131	543	0	ENST00000534358.1:c.4034A>G	p.Lys1345Arg	p.K1345R	ENST00000534358	NM_005933.3	1345	aAa/aGa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163928	47163928	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	115	348	0	ENST00000409792.3:c.2198A>G	p.Asp733Gly	p.D733G	ENST00000409792	NM_014159.6	733	gAt/gGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	263	632	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0016013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	222	562	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0016013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	137	496	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175525	112175525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	82	346	1	ENST00000257430.4:c.4234G>T	p.Gly1412Ter	p.G1412*	ENST00000257430	NM_000038.5	1412	Gga/Tga																																																																															
KDR	3791	MSKCC	GRCh37	4	55961059	55961059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	237	744	1	ENST00000263923.4:c.2881C>T	p.Arg961Trp	p.R961W	ENST00000263923	NM_002253.2	961	Cgg/Tgg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376680	118376680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	49	594	0	ENST00000534358.1:c.10073G>A	p.Ser3358Asn	p.S3358N	ENST00000534358	NM_005933.3	3358	aGt/aAt																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66525055	66525055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	48	246	0	ENST00000358598.2:c.814G>A	p.Glu272Lys	p.E272K	ENST00000358598	NM_212471.2	272	Gaa/Aaa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226826	2226826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	246	465	2	ENST00000398665.3:c.4306G>A	p.Gly1436Arg	p.G1436R	ENST00000398665	NM_032482.2	1436	Gga/Aga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	16	568	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
STK11	6794	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs137853076		P-0016014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	164	765	0	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43720339	43720339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	175	588	1	ENST00000382044.4:c.3703C>T	p.Pro1235Ser	p.P1235S	ENST00000382044	NM_001141980.1	1235	Cct/Tct																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4117509	4117509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	13	261	0	ENST00000262948.5:c.211G>A	p.Asp71Asn	p.D71N	ENST00000262948	NM_030662.3	71	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	117	412	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913324		P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	383	594	2	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420561	49420561	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	107	433	0	ENST00000301067.7:c.15188C>G	p.Ala5063Gly	p.A5063G	ENST00000301067	NM_003482.3	5063	gCc/gGc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524749	103524749	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	22	190	0	ENST00000355739.4:c.2879+1A>T		p.X960_splice	ENST00000355739	NM_000123.3	960																																																																																
IGF1R	3480	MSKCC	GRCh37	15	99500562	99500562	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	71	437	0	ENST00000268035.6:c.3995G>T	p.Gly1332Val	p.G1332V	ENST00000268035	NM_000875.3	1332	gGg/gTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26068349	26068349	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	42	248	0	ENST00000435504.4:c.140+1G>T		p.X47_splice	ENST00000435504		47																																																																																
TP63	8626	MSKCC	GRCh37	3	189526261	189526261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	130	438	0	ENST00000264731.3:c.525C>A	p.His175Gln	p.H175Q	ENST00000264731	NM_003722.4	175	caC/caA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510327	187510327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	58	246	0	ENST00000441802.2:c.13186G>T	p.Asp4396Tyr	p.D4396Y	ENST00000441802	NM_005245.3	4396	Gac/Tac																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793535	89793535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	42	312	0	ENST00000336032.3:c.604G>A	p.Gly202Ser	p.G202S	ENST00000336032	NM_006813.2	202	Ggt/Agt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150016236	150016236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	45	255	0	ENST00000253339.5:c.470G>T	p.Arg157Ile	p.R157I	ENST00000253339		157	aGa/aTa																																																																															
SMO	6608	MSKCC	GRCh37	7	128851547	128851547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	160	512	1	ENST00000249373.3:c.1872G>T	p.Lys624Asn	p.K624N	ENST00000249373	NM_005631.4	624	aaG/aaT																																																																															
NBN	4683	MSKCC	GRCh37	8	90993624	90993625	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	69	290	0	ENST00000265433.3:c.298_299delGGinsTT	p.Gly100Leu	p.G100L	ENST00000265433	NM_002485.4	100	GGa/TTa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123195088	123195103	+	frameshift_variant	Frame_Shift_Del	DEL	AGCATACCTTGTGGAT	AGCATACCTTGTGGAT	-			P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	32	297	0	ENST00000218089.9:c.1436_1451delACCTTGTGGATAGCAT	p.Tyr479CysfsTer9	p.Y479Cfs*9	ENST00000218089	NM_001042749.1	477	gcAGCATACCTTGTGGAT/gc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0016017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	1866	495	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0016017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	378	491	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602872	10602872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	296	752	1	ENST00000171111.5:c.706G>A	p.Asp236Asn	p.D236N	ENST00000171111	NM_203500.1	236	Gac/Aac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134251	11134251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	238	524	0	ENST00000344626.4:c.2917C>T	p.Arg973Trp	p.R973W	ENST00000344626	NM_003072.3	973	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092983	27092983	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	150	303	0	ENST00000324856.7:c.2914G>T	p.Asp972Tyr	p.D972Y	ENST00000324856	NM_006015.4	972	Gat/Tat																																																																															
PGR	5241	MSKCC	GRCh37	11	100962553	100962553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	552	454	2	ENST00000325455.5:c.1844G>A	p.Arg615His	p.R615H	ENST00000325455	NM_001202474.3	615	cGc/cAc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479774	67479774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	199	465	1	ENST00000327367.4:c.1081G>A	p.Glu361Lys	p.E361K	ENST00000327367	NM_005902.3	361	Gag/Aag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40747086	40747087	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0016017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	160	415	0	ENST00000373198.4:c.2995_2996delTCinsAA	p.Ser999Asn	p.S999N	ENST00000373198	NM_133170.3	999	TCc/AAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217261	66217261	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	117	296	2	ENST00000273854.3:c.2354C>G	p.Ser785Cys	p.S785C	ENST00000273854	NM_004439.5	785	tCt/tGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0016021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	171	464	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	357	713	0	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427279	49427279	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	122	293	1	ENST00000301067.7:c.11209C>T	p.Gln3737Ter	p.Q3737*	ENST00000301067	NM_003482.3	3737	Cag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42003399	42003399	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	76	357	0	ENST00000219905.7:c.2936A>T	p.Gln979Leu	p.Q979L	ENST00000219905	NM_001164273.1	979	cAg/cTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892235	9892235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	144	488	1	ENST00000330684.3:c.2255G>A	p.Ser752Asn	p.S752N	ENST00000330684	NM_001134407.1	752	aGt/aAt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39573243	39573243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	65	243	0	ENST00000262039.4:c.724G>A	p.Glu242Lys	p.E242K	ENST00000262039	NM_002647.2	242	Gaa/Aaa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56409138	56409138	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	84	302	1	ENST00000348428.3:c.1645G>T	p.Glu549Ter	p.E549*	ENST00000348428	NM_006785.3	549	Gag/Tag																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919004	50919004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	100	548	0	ENST00000440232.2:c.2741G>A	p.Ser914Asn	p.S914N	ENST00000440232	NM_002691.3	914	aGt/aAt																																																																															
ALK	238	MSKCC	GRCh37	2	29754905	29754905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	80	365	1	ENST00000389048.3:c.1030C>A	p.His344Asn	p.H344N	ENST00000389048	NM_004304.4	344	Cac/Aac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356240	66356240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	192	472	1	ENST00000273854.3:c.1257C>A	p.Ser419Arg	p.S419R	ENST00000273854	NM_004439.5	419	agC/agA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467410	66467410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	27	162	0	ENST00000273854.3:c.859G>A	p.Gly287Arg	p.G287R	ENST00000273854	NM_004439.5	287	Ggg/Agg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971239	13971239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	140	358	0	ENST00000405192.2:c.690G>T	p.Glu230Asp	p.E230D	ENST00000405192	NM_001163147.1	230	gaG/gaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0016026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	166	442	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849051	156849051	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	196	587	0	ENST00000524377.1:c.1943A>C	p.His648Pro	p.H648P	ENST00000524377	NM_002529.3	648	cAc/cCc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914218	32914218	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	69	397	0	ENST00000380152.3:c.5726A>T	p.Asp1909Val	p.D1909V	ENST00000380152		1909	gAt/gTt																																																																															
MAX	4149	MSKCC	GRCh37	14	65543370	65543370	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	33	456	0	ENST00000358664.4:c.307G>T	p.Glu103Ter	p.E103*	ENST00000358664	NM_002382.4	103	Gag/Tag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41228556	41228556	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	120	535	0	ENST00000357654.3:c.4433A>G	p.Glu1478Gly	p.E1478G	ENST00000357654	NM_007294.3	1478	gAg/gGg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41268739	41268739	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	77	341	0	ENST00000349496.5:c.977A>C	p.Asn326Thr	p.N326T	ENST00000349496	NM_001904.3	326	aAt/aCt																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045814	26045814	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	97	292	0	ENST00000540144.1:c.176C>G	p.Thr59Ser	p.T59S	ENST00000540144	NM_003531.2	59	aCc/aGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0016029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	403	488	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
STK11	6794	MSKCC	GRCh37	19	1221228	1221228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	240	589	1	ENST00000326873.7:c.751G>T	p.Gly251Cys	p.G251C	ENST00000326873	NM_000455.4	251	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577102	7577102	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	126	632	0	ENST00000269305.4:c.836G>T	p.Gly279Val	p.G279V	ENST00000269305	NM_001126112.2	279	gGg/gTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600428	10600428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	274	745	0	ENST00000171111.5:c.1427G>T	p.Gly476Val	p.G476V	ENST00000171111	NM_203500.1	476	gGg/gTg																																																																															
ATR	545	MSKCC	GRCh37	3	142286917	142286917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	52	317	0	ENST00000350721.4:c.139G>A	p.Asp47Asn	p.D47N	ENST00000350721	NM_001184.3	47	Gat/Aat																																																																															
ATR	545	MSKCC	GRCh37	3	142286925	142286925	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	58	359	0	ENST00000350721.4:c.131T>A	p.Ile44Lys	p.I44K	ENST00000350721	NM_001184.3	44	aTa/aAa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1940072	1940210	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTCCTTTCTTTTCCTTTTGTTGTTCTTTTTCTTTTTTTTTCCTTTTTTTCTTTTCTTTTTTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTAAATAATAGAGAGACACAATCACTGACAAAACGGCCAGAACA	TTTTCCTTTCTTTTCCTTTTGTTGTTCTTTTTCTTTTTTTTTCCTTTTTTTCTTTTCTTTTTTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTAAATAATAGAGAGACACAATCACTGACAAAACGGCCAGAACA	-			P-0016029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	38	14	0	ENST00000382891.5:c.1675-106_1707delTTTTCCTTTCTTTTCCTTTTGTTGTTCTTTTTCTTTTTTTTTCCTTTTTTTCTTTTCTTTTTTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTAAATAATAGAGAGACACAATCACTGACAAAACGGCCAGAACA		p.X559_splice	ENST00000382891	NM_133335.3	559																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139395252	139395253	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0016029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	205	549	2	ENST00000277541.6:c.5685_5686delGGinsTT	p.Glu1896Ter	p.E1896*	ENST00000277541	NM_017617.3	1895	ctGGag/ctTTag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0016030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	258	480	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	255	442	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	107	309	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0016030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	82	475	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370933	55370933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	336	700	0	ENST00000297316.4:c.235G>A	p.Ala79Thr	p.A79T	ENST00000297316	NM_022454.3	79	Gct/Act																																																																															
APC	324	MSKCC	GRCh37	5	112116517	112116517	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	62	354	0	ENST00000257430.4:c.562C>T	p.Gln188Ter	p.Q188*	ENST00000257430	NM_000038.5	188	Caa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591902	48591902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	137	379	0	ENST00000342988.3:c.1065C>A	p.Asp355Glu	p.D355E	ENST00000342988	NM_005359.5	355	gaC/gaA																																																																															
TP63	8626	MSKCC	GRCh37	3	189587133	189587133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	143	418	0	ENST00000264731.3:c.1150G>A	p.Gly384Ser	p.G384S	ENST00000264731	NM_003722.4	384	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175771	112175772	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	253	277	0	ENST00000257430.4:c.4483dup	p.Ser1495LysfsTer19	p.S1495Kfs*19	ENST00000257430	NM_000038.5	1494	gaa/gAaa																																																																															
MED12	9968	MSKCC	GRCh37	X	70356454	70356454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	321	358	1	ENST00000374080.3:c.5349G>T	p.Lys1783Asn	p.K1783N	ENST00000374080		1783	aaG/aaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	161	442	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	285	643	0	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94197402	94197402	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	80	450	1	ENST00000323929.3:c.1102G>T	p.Asp368Tyr	p.D368Y	ENST00000323929	NM_005591.3	368	Gac/Tac																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592115	67592115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	68	293	0	ENST00000274335.5:c.1931G>A	p.Gly644Asp	p.G644D	ENST00000274335		644	gGc/gAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045006	47045006	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	286	391	1	ENST00000329236.7:c.2098C>T	p.Gln700Ter	p.Q700*	ENST00000329236	NM_001204466.1	700	Cag/Tag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11319330	11319330	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	165	481	0	ENST00000361445.4:c.137A>T	p.His46Leu	p.H46L	ENST00000361445	NM_004958.3	46	cAc/cTc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849848	156849848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	158	458	3	ENST00000524377.1:c.2104C>T	p.Arg702Cys	p.R702C	ENST00000524377	NM_002529.3	702	Cgt/Tgt																																																																															
NUF2	83540	MSKCC	GRCh37	1	163306558	163306558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	80	447	3	ENST00000271452.3:c.355C>T	p.Arg119Trp	p.R119W	ENST00000271452	NM_145697.2	119	Cgg/Tgg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342446	118342446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	44	309	0	ENST00000534358.1:c.572C>T	p.Ser191Leu	p.S191L	ENST00000534358	NM_005933.3	191	tCa/tTa																																																																															
CCND2	894	MSKCC	GRCh37	12	4398085	4398085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	91	511	0	ENST00000261254.3:c.649G>A	p.Asp217Asn	p.D217N	ENST00000261254	NM_001759.3	217	Gat/Aat																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244780	46244780	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	118	558	2	ENST00000334344.6:c.2874G>T	p.Gln958His	p.Q958H	ENST00000334344	NM_152641.2	958	caG/caT																																																																															
POLE	5426	MSKCC	GRCh37	12	133225983	133225983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	330	629	0	ENST00000320574.5:c.3914G>T	p.Gly1305Val	p.G1305V	ENST00000320574	NM_006231.2	1305	gGg/gTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435916	110435916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	87	654	0	ENST00000375856.3:c.2485C>T	p.Pro829Ser	p.P829S	ENST00000375856	NM_003749.2	829	Ccc/Tcc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420266	88420266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	79	554	1	ENST00000360948.2:c.2420G>T	p.Trp807Leu	p.W807L	ENST00000360948	NM_001012338.2	807	tGg/tTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679144	88679144	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	138	361	0	ENST00000360948.2:c.893C>A	p.Ala298Asp	p.A298D	ENST00000360948	NM_001012338.2	298	gCc/gAc																																																																															
CD79B	974	MSKCC	GRCh37	17	62007210	62007210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	304	598	0	ENST00000392795.3:c.472C>A	p.Leu158Met	p.L158M	ENST00000392795	NM_001039933.1	158	Ctg/Atg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533123	63533123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	231	528	0	ENST00000307078.5:c.1771G>T	p.Ala591Ser	p.A591S	ENST00000307078	NM_004655.3	591	Gcc/Tcc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119075	70119075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	229	418	1	ENST00000245479.2:c.647C>A	p.Ser216Tyr	p.S216Y	ENST00000245479	NM_000346.3	216	tCc/tAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593479	48593479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	72	325	0	ENST00000342988.3:c.1230G>T	p.Gln410His	p.Q410H	ENST00000342988	NM_005359.5	410	caG/caT																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867806	45867806	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	93	611	0	ENST00000391945.4:c.595-1G>T		p.X199_splice	ENST00000391945	NM_000400.3	199																																																																																
MSH6	2956	MSKCC	GRCh37	2	48030583	48030583	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	58	308	0	ENST00000234420.5:c.3197A>G	p.Tyr1066Cys	p.Y1066C	ENST00000234420	NM_000179.2	1066	tAt/tGt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49935072	49935072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	203	669	0	ENST00000296474.3:c.1927G>A	p.Glu643Lys	p.E643K	ENST00000296474	NM_002447.2	643	Gag/Aag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52595914	52595914	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	251	608	0	ENST00000394830.3:c.4001A>C	p.Tyr1334Ser	p.Y1334S	ENST00000394830	NM_018313.4	1334	tAc/tCc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134898707	134898707	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	122	269	0	ENST00000398015.3:c.1765C>A	p.Pro589Thr	p.P589T	ENST00000398015	NM_004441.4	589	Cca/Aca																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143159041	143159041	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	78	306	0	ENST00000262992.4:c.812T>A	p.Leu271His	p.L271H	ENST00000262992	NM_001101669.1	271	cTt/cAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295441	1295441	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	28	37	0				ENST00000310581	NM_198253.2																																																																																	
RICTOR	253260	MSKCC	GRCh37	5	39021187	39021187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	80	395	0	ENST00000357387.3:c.149G>A	p.Gly50Glu	p.G50E	ENST00000357387	NM_152756.3	50	gGa/gAa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522554	176522554	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	218	627	0	ENST00000292408.4:c.1651G>T	p.Glu551Ter	p.E551*	ENST00000292408	NM_213647.1	551	Gag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81386559	81386559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	186	493	0	ENST00000222390.5:c.428C>A	p.Thr143Asn	p.T143N	ENST00000222390	NM_000601.4	143	aCt/aAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046489	69046489	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	253	509	0	ENST00000288368.4:c.3962A>C	p.Gln1321Pro	p.Q1321P	ENST00000288368	NM_024870.2	1321	cAg/cCg																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80430635	80430635	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	80	292	0	ENST00000286548.4:c.373G>T	p.Glu125Ter	p.E125*	ENST00000286548	NM_002072.3	125	Gag/Tag																																																																															
ABL1	25	MSKCC	GRCh37	9	133729492	133729492	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	128	504	0	ENST00000318560.5:c.121G>T	p.Gly41Cys	p.G41C	ENST00000318560	NM_005157.4	41	Ggt/Tgt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390923	139390923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	134	725	0	ENST00000277541.6:c.7268C>T	p.Ser2423Leu	p.S2423L	ENST00000277541	NM_017617.3	2423	tCa/tTa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53247581	53247581	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	162	182	0	ENST00000375401.3:c.229-1G>T		p.X77_splice	ENST00000375401	NM_004187.3	77																																																																																
STK11	6794	MSKCC	GRCh37	19	1220371	1220371	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	77	425	0	ENST00000326873.7:c.465-1G>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0016034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	47	524	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861822	57861822	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	80	591	1	ENST00000228682.2:c.1123G>T	p.Asp375Tyr	p.D375Y	ENST00000228682	NM_005269.2	375	Gat/Tat																																																																															
AKT3	10000	MSKCC	GRCh37	1	243776996	243776996	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	45	534	0	ENST00000263826.5:c.673A>C	p.Met225Leu	p.M225L	ENST00000263826	NM_005465.4	225	Atg/Ctg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482347	56482347	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	54	449	0	ENST00000267101.3:c.895A>G	p.Thr299Ala	p.T299A	ENST00000267101	NM_001982.3	299	Aca/Gca																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779743	3779743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	52	511	0	ENST00000262367.5:c.5305C>T	p.Arg1769Trp	p.R1769W	ENST00000262367	NM_004380.2	1769	Cgg/Tgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602688	10602688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	103	633	0	ENST00000171111.5:c.890G>T	p.Cys297Phe	p.C297F	ENST00000171111	NM_203500.1	297	tGc/tTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138486	11138486	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	64	480	0	ENST00000344626.4:c.3242A>C	p.Lys1081Thr	p.K1081T	ENST00000344626	NM_003072.3	1081	aAa/aCa																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965693	18965693	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	85	655	0	ENST00000262803.5:c.1271A>T	p.Gln424Leu	p.Q424L	ENST00000262803	NM_002911.3	424	cAg/cTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931799	39931799	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	98	585	0	ENST00000378444.4:c.2800G>C	p.Asp934His	p.D934H	ENST00000378444	NM_001123385.1	934	Gat/Cat																																																																															
MED12	9968	MSKCC	GRCh37	X	70345997	70345997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	71	519	0	ENST00000374080.3:c.2534C>T	p.Thr845Met	p.T845M	ENST00000374080		845	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	102	536	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43762215	43762215	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	80	624	0	ENST00000382044.4:c.1230delT	p.Gln411ArgfsTer12	p.Q411Rfs*12	ENST00000382044	NM_001141980.1	410	ttT/tt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	37	676	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619374	1619374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	64	654	0	ENST00000344749.5:c.1267G>A	p.Gly423Arg	p.G423R	ENST00000344749	NM_001136139.2	423	Ggg/Agg																																																																															
ALK	238	MSKCC	GRCh37	2	30143204	30143204	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1268240399		P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	42	485	0	ENST00000389048.3:c.322del	p.Val108SerfsTer20	p.V108Sfs*20	ENST00000389048	NM_004304.4	108	Gtc/tc																																																																															
MYD88	4615	MSKCC	GRCh37	3	38180273	38180273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	183	578	0	ENST00000396334.3:c.121C>T	p.Arg41Ter	p.R41*	ENST00000396334	NM_002468.4	41	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630007	187630007	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	126	587	0	ENST00000441802.2:c.975G>C	p.Trp325Cys	p.W325C	ENST00000441802	NM_005245.3	325	tgG/tgC																																																																															
SDHA	6389	MSKCC	GRCh37	5	228384	228384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	51	394	0	ENST00000264932.6:c.706G>A	p.Ala236Thr	p.A236T	ENST00000264932	NM_004168.2	236	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	46	364	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225474	26225474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	24	180	0	ENST00000360408.1:c.92C>T	p.Pro31Leu	p.P31L	ENST00000360408	NM_003532.2	31	cCg/cTg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170136	32170136	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	69	673	1	ENST00000375023.3:c.3472C>T	p.Arg1158Ter	p.R1158*	ENST00000375023	NM_004557.3	1158	Cga/Tga																																																																															
HGF	3082	MSKCC	GRCh37	7	81372714	81372714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	82	396	0	ENST00000222390.5:c.820C>A	p.Leu274Ile	p.L274I	ENST00000222390	NM_000601.4	274	Ctt/Att																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737702	145737702	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137853232		P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	120	543	3	ENST00000428558.2:c.3061C>T	p.Arg1021Trp	p.R1021W	ENST00000428558	NM_004260.3	1021	Cgg/Tgg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0016041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	179	801	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252994	36252995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0016041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	118	594	0	ENST00000300305.3:c.366_367dupGG	p.Asp123GlyfsTer11	p.D123Gfs*11	ENST00000300305		123	gat/gGGat																																																																															
CDH1	999	MSKCC	GRCh37	16	68842594	68842594	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0016041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	135	553	0	ENST00000261769.5:c.532-2A>G		p.X178_splice	ENST00000261769	NM_004360.3	178																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56180579	56180579	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	35	447	0	ENST00000399503.3:c.3908A>T	p.His1303Leu	p.H1303L	ENST00000399503	NM_005921.1	1303	cAt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	327	578	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108204641	108204653	+	frameshift_variant	Frame_Shift_Del	DEL	AATTACTAAACTT	AATTACTAAACTT	-			P-0016043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	51	250	0	ENST00000278616.4:c.7958_7970delTTACTAAACTTAA	p.Ile2653ArgfsTer3	p.I2653Rfs*3	ENST00000278616	NM_000051.3	2652	ccAATTACTAAACTT/cc																																																																															
POLE	5426	MSKCC	GRCh37	12	133220131	133220131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	71	729	1	ENST00000320574.5:c.4306C>T	p.Arg1436Trp	p.R1436W	ENST00000320574	NM_006231.2	1436	Cgg/Tgg																																																																															
MGA	23269	MSKCC	GRCh37	15	42000300	42000300	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0016043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	39	337	0	ENST00000219905.7:c.2321-2A>T		p.X774_splice	ENST00000219905	NM_001164273.1	774																																																																																
AKT2	208	MSKCC	GRCh37	19	40747919	40747919	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	96	647	0	ENST00000392038.2:c.499A>T	p.Ile167Phe	p.I167F	ENST00000392038	NM_001626.4	167	Atc/Ttc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877398	40877398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	69	561	1	ENST00000373198.4:c.2298G>T	p.Met766Ile	p.M766I	ENST00000373198	NM_133170.3	766	atG/atT																																																																															
NF2	4771	MSKCC	GRCh37	22	30074272	30074272	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	40	595	0	ENST00000338641.4:c.1534A>G	p.Thr512Ala	p.T512A	ENST00000338641	NM_000268.3	512	Act/Gct																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539594	187539594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	61	348	0	ENST00000441802.2:c.8146G>T	p.Val2716Leu	p.V2716L	ENST00000441802	NM_005245.3	2716	Gtg/Ttg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968242	2968242	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	71	675	2	ENST00000396946.4:c.1744C>A	p.Pro582Thr	p.P582T	ENST00000396946	NM_032415.4	582	Ccc/Acc																																																																															
HGF	3082	MSKCC	GRCh37	7	81335662	81335663	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0016043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	128	597	0	ENST00000222390.5:c.1697dup	p.Asn566LysfsTer10	p.N566Kfs*10	ENST00000222390	NM_000601.4	566	aat/aaAt																																																																															
HGF	3082	MSKCC	GRCh37	7	81350062	81350062	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	66	346	0	ENST00000222390.5:c.1270C>A	p.Arg424Ser	p.R424S	ENST00000222390	NM_000601.4	424	Cgt/Agt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5246048	5246048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	130	282	0	ENST00000357368.4:c.727G>A	p.Val243Met	p.V243M	ENST00000357368	NM_002850.3	243	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579870	7579870	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	475	631	1	ENST00000269305.4:c.43del	p.Ser15ValfsTer29	p.S15Vfs*29	ENST00000269305	NM_001126112.2	15	Agt/gt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016618	12016618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	177	338	0	ENST00000353533.5:c.754G>A	p.Gly252Arg	p.G252R	ENST00000353533	NM_003010.3	252	Gga/Aga																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971291	13971291	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748182764		P-0016044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	135	391	0	ENST00000405192.2:c.638G>A	p.Arg213His	p.R213H	ENST00000405192	NM_001163147.1	213	cGc/cAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69002915	69002915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	66	321	2	ENST00000288368.4:c.2215G>A	p.Val739Ile	p.V739I	ENST00000288368	NM_024870.2	739	Gtt/Att																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	306	473	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675071	40675071	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	49	600	0	ENST00000249776.8:c.35N>G	p.Val12Gly	p.V12G	ENST00000249776	NM_033286.3	12	gTt/gGt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936051	49936051	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	70	609	1	ENST00000296474.3:c.1619G>A	p.Trp540Ter	p.W540*	ENST00000296474	NM_002447.2	540	tGg/tAg																																																																															
KDR	3791	MSKCC	GRCh37	4	55956179	55956180	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-			P-0016045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	85	407	0	ENST00000263923.4:c.3135_3136del	p.Cys1045Ter	p.C1045*	ENST00000263923	NM_002253.2	1045	tgTGac/tgac																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0016046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	130	304	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821596	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs767179754		P-0016046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	10	109	1	ENST00000268489.5:c.10579_10581del	p.Gly3527del	p.G3527del	ENST00000268489	NM_006885.3	3527	GGC/-																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923397	9923397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	281	603	0	ENST00000330684.3:c.1890G>A	p.Met630Ile	p.M630I	ENST00000330684	NM_001134407.1	630	atG/atA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101474	27101568	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAGCCCTGCTCCCCTGCCCCGGCCAATGGAGAACCGCACCTCTCCTAGCAAGTCTCCATTCCTGCACTCTGGGATGAAAATGCAGAAGGCAGG	TCCAGCCCTGCTCCCCTGCCCCGGCCAATGGAGAACCGCACCTCTCCTAGCAAGTCTCCATTCCTGCACTCTGGGATGAAAATGCAGAAGGCAGG	-			P-0016046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	78	740	0	ENST00000324856.7:c.4759_4853del	p.Ser1587ProfsTer29	p.S1587Pfs*29	ENST00000324856	NM_006015.4	1586	TCCAGCCCTGCTCCCCTGCCCCGGCCAATGGAGAACCGCACCTCTCCTAGCAAGTCTCCATTCCTGCACTCTGGGATGAAAATGCAGAAGGCAGGt/t																																																																															
MGA	23269	MSKCC	GRCh37	15	41991097	41991097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	220	482	0	ENST00000219905.7:c.2050G>A	p.Glu684Lys	p.E684K	ENST00000219905	NM_001164273.1	684	Gaa/Aaa																																																																															
KIT	3815	MSKCC	GRCh37	4	55592204	55592204	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	53	374	0	ENST00000288135.5:c.1528G>T	p.Gly510Cys	p.G510C	ENST00000288135	NM_000222.2	510	Ggt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0016047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	235	561	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026859	48026859	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	145	317	0	ENST00000234420.5:c.1737T>G	p.Cys579Trp	p.C579W	ENST00000234420	NM_000179.2	579	tgT/tgG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	112	559	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923503	9923503	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	47	375	0	ENST00000330684.3:c.1784A>G	p.His595Arg	p.H595R	ENST00000330684	NM_001134407.1	595	cAt/cGt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458054	120458054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	56	493	0	ENST00000256646.2:c.7291C>T	p.His2431Tyr	p.H2431Y	ENST00000256646	NM_024408.3	2431	Cac/Tac																																																																															
ATM	472	MSKCC	GRCh37	11	108206616	108206616	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	171	444	0	ENST00000278616.4:c.8196C>A	p.Phe2732Leu	p.F2732L	ENST00000278616	NM_000051.3	2732	ttC/ttA																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78704451	78704451	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	82	448	1	ENST00000306801.3:c.599G>T	p.Gly200Val	p.G200V	ENST00000306801	NM_020761.2	200	gGc/gTc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56367808	56367808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	82	369	0	ENST00000348428.3:c.634C>T	p.Pro212Ser	p.P212S	ENST00000348428	NM_006785.3	212	Cca/Tca																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942535	17942535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	43	655	3	ENST00000458235.1:c.2753G>A	p.Arg918His	p.R918H	ENST00000458235	NM_000215.3	918	cGc/cAc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190708715	190708715	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	87	501	0	ENST00000441310.2:c.608T>A	p.Val203Glu	p.V203E	ENST00000441310	NM_000534.4	203	gTa/gAa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212495203	212495203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	97	572	0	ENST00000342788.4:c.2063G>T	p.Arg688Ile	p.R688I	ENST00000342788	NM_005235.2	688	aGa/aTa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517444	176517444	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	117	606	2	ENST00000292408.4:c.145C>A	p.Leu49Ile	p.L49I	ENST00000292408	NM_213647.1	49	Ctt/Att																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163264	32163264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	198	1032	2	ENST00000375023.3:c.5962C>T	p.Pro1988Ser	p.P1988S	ENST00000375023	NM_004557.3	1988	Cca/Tca																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502149	157502149	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	42	548	0	ENST00000346085.5:c.3182A>T	p.Tyr1061Phe	p.Y1061F	ENST00000346085	NM_020732.3	1061	tAc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	195	537	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0016051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	151	421	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0016051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	557	875	3	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
KIT	3815	MSKCC	GRCh37	4	55602952	55602952	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1237984655		P-0016051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	218	436	0	ENST00000288135.5:c.2662C>T	p.Arg888Trp	p.R888W	ENST00000288135	NM_000222.2	888	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175562	112175563	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGAT			P-0016051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	191	508	0	ENST00000257430.4:c.4274_4277dup	p.Ser1426ArgfsTer2	p.S1426Rfs*2	ENST00000257430	NM_000038.5	1424	cca/ccAGATa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273049	55273049	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	426	664	2	ENST00000275493.2:c.3372C>A	p.His1124Gln	p.H1124Q	ENST00000275493	NM_005228.3	1124	caC/caA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0016054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	131	526	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0016054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	182	474	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45422926	45422926	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	133	372	0	ENST00000262160.6:c.202C>T	p.Gln68Ter	p.Q68*	ENST00000262160	NM_005901.5	68	Caa/Taa																																																																															
HGF	3082	MSKCC	GRCh37	7	81392173	81392173	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	53	211	0	ENST00000222390.5:c.104G>C	p.Arg35Thr	p.R35T	ENST00000222390	NM_000601.4	35	aGa/aCa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226125	53226125	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	190	589	0	ENST00000375401.3:c.2724del	p.Arg909GlyfsTer26	p.R909Gfs*26	ENST00000375401	NM_004187.3	908	ggG/gg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200720	128200720	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	8	817	3	ENST00000341105.2:c.1085G>T	p.Arg362Leu	p.R362L	ENST00000341105	NM_032638.4	362	cGa/cTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151960099	151960099	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0016059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	23	567	0	ENST00000262189.6:c.1299+2T>C		p.X433_splice	ENST00000262189	NM_170606.2	433																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	392	810	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SESN3	143686	MSKCC	GRCh37	11	94963946	94963946	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	99	622	0	ENST00000536441.1:c.78+1G>T		p.X26_splice	ENST00000536441	NM_144665.3	26																																																																																
CCND2	894	MSKCC	GRCh37	12	4409039	4409039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	53	481	0	ENST00000261254.3:c.734C>T	p.Ala245Val	p.A245V	ENST00000261254	NM_001759.3	245	gCt/gTt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212522512	212522512	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	55	616	0	ENST00000342788.4:c.1913G>C	p.Trp638Ser	p.W638S	ENST00000342788	NM_005235.2	638	tGg/tCg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133538	55133538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	48	805	2	ENST00000257290.5:c.842C>T	p.Thr281Met	p.T281M	ENST00000257290	NM_006206.4	281	aCg/aTg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680299	30680299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	67	848	0	ENST00000376406.3:c.1420C>T	p.His474Tyr	p.H474Y	ENST00000376406	NM_014641.2	474	Cac/Tac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	205	645	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0016066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	20	644	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	57	410	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104893810		P-0016066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	288	455	0	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0016066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	168	754	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	348	458	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7984229	7984229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	180	842	0	ENST00000319144.4:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000319144	NM_001139.2	167	cGg/cAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275653	41275653	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	117	594	0	ENST00000349496.5:c.1548T>G	p.Asn516Lys	p.N516K	ENST00000349496	NM_001904.3	516	aaT/aaG																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153271273	153271273	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	69	400	0	ENST00000281708.4:c.505A>T	p.Lys169Ter	p.K169*	ENST00000281708	NM_033632.3	169	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174010	112174010	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	185	548	0	ENST00000257430.4:c.2721del	p.Ser908LeufsTer8	p.S908Lfs*8	ENST00000257430	NM_000038.5	907	Ggg/gg																																																																															
ERG	2078	MSKCC	GRCh37	21	39755698	39755698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	29	724	1	ENST00000288319.7:c.1067G>A	p.Ser356Asn	p.S356N	ENST00000288319	NM_182918.3	356	aGc/aAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47129731	47129731	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	16	409	1	ENST00000409792.3:c.5149G>T	p.Gly1717Ter	p.G1717*	ENST00000409792	NM_014159.6	1717	Gga/Tga																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400279	139400295	+	frameshift_variant	Frame_Shift_Del	DEL	AGCGCAGGCTGCCGCAG	AGCGCAGGCTGCCGCAG	-			P-0016087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	52	784	0	ENST00000277541.6:c.4053_4069del	p.Cys1352ProfsTer47	p.C1352Pfs*47	ENST00000277541	NM_017617.3	1351	acCTGCGGCAGCCTGCGCTgc/acgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	1212	618	2	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619172	37619172	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	146	578	0	ENST00000447079.4:c.848C>A	p.Ser283Ter	p.S283*	ENST00000447079	NM_015083.1	283	tCg/tAg																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66523994	66523994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	43	260	0	ENST00000358598.2:c.722G>A	p.Arg241Lys	p.R241K	ENST00000358598	NM_212471.2	241	aGa/aAa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37884031	37884031	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	370	719	1	ENST00000269571.5:c.3502G>T	p.Glu1168Ter	p.E1168*	ENST00000269571		1168	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	416	990	0	ENST00000269305.4:c.394A>T	p.Lys132Ter	p.K132*	ENST00000269305	NM_001126112.2	132	Aag/Tag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458549	120458549	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	124	581	0	ENST00000256646.2:c.6796G>C	p.Glu2266Gln	p.E2266Q	ENST00000256646	NM_024408.3	2266	Gag/Cag																																																																															
PGR	5241	MSKCC	GRCh37	11	100922156	100922156	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	239	387	0	ENST00000325455.5:c.2356G>T	p.Glu786Ter	p.E786*	ENST00000325455	NM_001202474.3	786	Gaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108137924	108137925	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	33	415	2	ENST00000278616.4:c.2493_2494delinsAT	p.Asp831_Arg832delinsGluCys	p.D831_R832delinsEC	ENST00000278616	NM_000051.3	831	gaCCgt/gaATgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133240613	133240613	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201115064		P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	87	482	0	ENST00000320574.5:c.2683G>A	p.Ala895Thr	p.A895T	ENST00000320574	NM_006231.2	895	Gcc/Acc																																																																															
RB1	5925	MSKCC	GRCh37	13	49039201	49039201	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	280	579	0	ENST00000267163.4:c.2279T>C	p.Phe760Ser	p.F760S	ENST00000267163	NM_000321.2	760	tTc/tCc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30194859	30194859	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	150	589	0	ENST00000331968.5:c.286G>T	p.Gly96Ter	p.G96*	ENST00000331968	NM_002742.2	96	Gga/Tga																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646990	23646990	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	132	617	0	ENST00000261584.4:c.877G>C	p.Gly293Arg	p.G293R	ENST00000261584	NM_024675.3	293	Ggc/Cgc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619037	37619037	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	167	694	0	ENST00000447079.4:c.713C>G	p.Ser238Trp	p.S238W	ENST00000447079	NM_015083.1	238	tCg/tGg																																																																															
CARM1	10498	MSKCC	GRCh37	19	10982118	10982511	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	GCCCAGGACGGCCGGCAGAGGGCGCTGCGCCACGGGGCCGGGCCGCGGCGACGGTGGCGGCGGCGGCGGCGAGGCGGCGCGTGGCCGGCAGGCGGCGCTGCCCGGCTCGGCCTCGGCCTGCACGGCGGCTGCGGCGGCGGTAGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCCTGGGCCCGGGCGCAGCGGCGGCGGCGGCGGGGCCTGGAGCCGGATCTAAGATGGCAGCGGCGGCGGCGGCGGTGGGGCCGGGCGCGGGCGGCGCGGGGTCGGCGGTCCCGGGCGGCGCGGGGCCCTGCGCTACCGTGTCGGTGTTCCCCGGCGCCCGCCTCCTCACCATCGGCGACGCGAACG	GCCCAGGACGGCCGGCAGAGGGCGCTGCGCCACGGGGCCGGGCCGCGGCGACGGTGGCGGCGGCGGCGGCGAGGCGGCGCGTGGCCGGCAGGCGGCGCTGCCCGGCTCGGCCTCGGCCTGCACGGCGGCTGCGGCGGCGGTAGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCCTGGGCCCGGGCGCAGCGGCGGCGGCGGCGGGGCCTGGAGCCGGATCTAAGATGGCAGCGGCGGCGGCGGCGGTGGGGCCGGGCGCGGGCGGCGCGGGGTCGGCGGTCCCGGGCGGCGCGGGGCCCTGCGCTACCGTGTCGGTGTTCCCCGGCGCCCGCCTCCTCACCATCGGCGACGCGAACG	-			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	2	33	0				ENST00000327064	NM_199141.1			16-Jan																																																																														
CIC	23152	MSKCC	GRCh37	19	42797942	42797942	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	218	817	0	ENST00000575354.2:c.3994A>G	p.Lys1332Glu	p.K1332E	ENST00000575354	NM_015125.3	1332	Aag/Gag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660831	227660831	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	25	421	0	ENST00000305123.5:c.2624G>C	p.Arg875Pro	p.R875P	ENST00000305123	NM_005544.2	875	cGa/cCa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682459	52682459	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	72	330	0	ENST00000394830.3:c.715-1G>A		p.X239_splice	ENST00000394830	NM_018313.4	239																																																																																
ATR	545	MSKCC	GRCh37	3	142186823	142186823	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	223	410	0	ENST00000350721.4:c.6640G>C	p.Asp2214His	p.D2214H	ENST00000350721	NM_001184.3	2214	Gat/Cat																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31468146	31468146	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	89	594	0	ENST00000344624.3:c.2266C>T	p.Gln756Ter	p.Q756*	ENST00000344624		756	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0016091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	77	456	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0016091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	337	845	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	126	541	0	ENST00000369535.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000369535	NM_002524.4	12	gGt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0016091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	89	259	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
MPL	4352	MSKCC	GRCh37	1	43806160	43806160	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	205	511	0	ENST00000372470.3:c.956G>T	p.Arg319Met	p.R319M	ENST00000372470	NM_005373.2	319	aGg/aTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911579	114911579	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	38	749	0	ENST00000543371.1:c.1097C>G	p.Ala366Gly	p.A366G	ENST00000543371	NM_001198531.1	366	gCa/gGa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647918	3647918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	201	903	1	ENST00000294008.3:c.1246G>A	p.Ala416Thr	p.A416T	ENST00000294008	NM_032444.2	416	Gca/Aca																																																																															
NF2	4771	MSKCC	GRCh37	22	30051642	30051642	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	30	374	0	ENST00000338641.4:c.576C>G	p.Tyr192Ter	p.Y192*	ENST00000338641	NM_000268.3	192	taC/taG																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324112	31324125	+	frameshift_variant	Frame_Shift_Del	DEL	TCAGGGCGATGTAA	TCAGGGCGATGTAA	-			P-0016091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	38	134	0	ENST00000412585.2:c.438_451del	p.Asp146GlufsTer26	p.D146Efs*26	ENST00000412585	NM_005514.6	146	gaTTACATCGCCCTGAac/gaac																																																																															
EZH2	2146	MSKCC	GRCh37	7	148512047	148512047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	170	471	0	ENST00000320356.2:c.1631C>T	p.Ala544Val	p.A544V	ENST00000320356	NM_004456.4	544	gCa/gTa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0016108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	39	470	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	45	707	3	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17116977	17116977	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	23	454	0	ENST00000285071.4:c.1732C>G	p.Arg578Gly	p.R578G	ENST00000285071	NM_144997.5	578	Cgg/Ggg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120214	70120214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	51	656	0	ENST00000245479.2:c.1216C>T	p.His406Tyr	p.H406Y	ENST00000245479	NM_000346.3	406	Cac/Tac																																																																															
ARAF	369	MSKCC	GRCh37	X	47424220	47424220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	36	584	0	ENST00000377045.4:c.225C>A	p.Asp75Glu	p.D75E	ENST00000377045	NM_001654.4	75	gaC/gaA																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575488	64575488	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	375	478	1	ENST00000337652.1:c.544del	p.Leu182CysfsTer8	p.L182Cfs*8	ENST00000337652	NM_130803.2	182	Ctg/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	534	765	1	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473779	67473779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	566	600	1	ENST00000327367.4:c.859C>T	p.Arg287Trp	p.R287W	ENST00000327367	NM_005902.3	287	Cgg/Tgg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793382	18793382	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs77070108		P-0016111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	261	549	1	ENST00000266497.5:c.4079C>T	p.Ala1360Val	p.A1360V	ENST00000266497		1360	gCg/gTg																																																																															
ALK	238	MSKCC	GRCh37	2	29917794	29917794	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201750304		P-0016111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	443	705	1	ENST00000389048.3:c.874C>T	p.Arg292Cys	p.R292C	ENST00000389048	NM_004304.4	292	Cgc/Tgc																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22008871	22008871	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	447	724	0	ENST00000276925.6:c.82G>T	p.Glu28Ter	p.E28*	ENST00000276925	NM_004936.3	28	Gag/Tag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	229	876	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	182	609	2	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	340	668	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	111	666	0	ENST00000324856.7:c.3977dupC	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																															
RHOA	387	MSKCC	GRCh37	3	49405953	49405953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	64	1142	0	ENST00000418115.1:c.185G>A	p.Gly62Glu	p.G62E	ENST00000418115	NM_001664.2	62	gGg/gAg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	183	798	1	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521543	8521543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	40	677	0	ENST00000356435.5:c.695G>A	p.Arg232His	p.R232H	ENST00000356435		232	cGc/cAc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	106	457	3	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	80	493	0	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032560	47032560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	273	820	0	ENST00000329236.7:c.235G>A	p.Ala79Thr	p.A79T	ENST00000329236	NM_001204466.1	79	Gca/Aca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272336	15272337	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs771517374		P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	225	1127	5	ENST00000263388.2:c.6102dup	p.Gly2035ArgfsTer60	p.G2035Rfs*60	ENST00000263388	NM_000435.2	2034	-/C																																																																															
POLE	5426	MSKCC	GRCh37	12	133209298	133209298	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	126	910	1	ENST00000320574.5:c.6088delG	p.Ala2030ProfsTer18	p.A2030Pfs*18	ENST00000320574	NM_006231.2	2030	Gcc/cc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89857932	89857932	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201385829		P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	134	900	0	ENST00000389301.3:c.1238G>A	p.Arg413His	p.R413H	ENST00000389301	NM_000135.2	413	cGt/cAt																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519505	137519506	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs780346130		P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	174	573	6	ENST00000367739.4:c.1132_1133del	p.Ser378PhefsTer6	p.S378Ffs*6	ENST00000367739	NM_000416.2	378	AGt/t																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784962	9784962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	43	736	0	ENST00000377346.4:c.2965C>T	p.Leu989Phe	p.L989F	ENST00000377346	NM_005026.3	989	Ctc/Ttc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16242743	16242743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	278	1032	3	ENST00000375759.3:c.1364G>A	p.Arg455His	p.R455H	ENST00000375759	NM_015001.2	455	cGc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259612	16259612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	147	934	0	ENST00000375759.3:c.6877G>A	p.Ala2293Thr	p.A2293T	ENST00000375759	NM_015001.2	2293	Gcc/Acc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46733255	46733255	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	152	852	0	ENST00000371975.4:c.1016T>C	p.Val339Ala	p.V339A	ENST00000371975	NM_003579.3	339	gTa/gCa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156841430	156841430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	143	665	0	ENST00000524377.1:c.733C>T	p.Pro245Ser	p.P245S	ENST00000524377	NM_002529.3	245	Cca/Tca																																																																															
TET1	80312	MSKCC	GRCh37	10	70446226	70446226	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	207	808	2	ENST00000373644.4:c.5166G>T	p.Lys1722Asn	p.K1722N	ENST00000373644	NM_030625.2	1722	aaG/aaT																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911519	114911519	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	103	572	0	ENST00000543371.1:c.1037A>G	p.Lys346Arg	p.K346R	ENST00000543371	NM_001198531.1	346	aAg/aGg																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589762	69589762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	11	156	1	ENST00000168712.1:c.91G>A	p.Ala31Thr	p.A31T	ENST00000168712	NM_002007.2	31	Gca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435192	49435193	+	missense_variant	Missense_Mutation	DNP	CA	CA	GG			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	51	477	5	ENST00000301067.7:c.6360_6361delinsCC	p.Ala2121Pro	p.A2121P	ENST00000301067	NM_003482.3	2120	gcTGcc/gcCCcc																																																																															
POLE	5426	MSKCC	GRCh37	12	133219301	133219301	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	41	777	0	ENST00000320574.5:c.4743delG	p.Thr1583HisfsTer11	p.T1583Hfs*11	ENST00000320574	NM_006231.2	1581	ggG/gg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514607	103514607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	140	538	0	ENST00000355739.4:c.1108C>T	p.Arg370Cys	p.R370C	ENST00000355739	NM_000123.3	370	Cgt/Tgt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527843	103527843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	107	801	1	ENST00000355739.4:c.3151G>A	p.Ala1051Thr	p.A1051T	ENST00000355739	NM_000123.3	1051	Gca/Aca																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66782948	66782948	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200442489		P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	209	577	3	ENST00000307102.5:c.1177G>A	p.Val393Ile	p.V393I	ENST00000307102	NM_002755.3	393	Gtc/Atc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646467	23646467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	241	924	0	ENST00000261584.4:c.1400G>A	p.Gly467Asp	p.G467D	ENST00000261584	NM_024675.3	467	gGc/gAc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647133	23647133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	56	1053	3	ENST00000261584.4:c.734C>T	p.Ala245Val	p.A245V	ENST00000261584	NM_024675.3	245	gCg/gTg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50826530	50826530	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	212	628	0	ENST00000398568.2:c.2255A>C	p.Gln752Pro	p.Q752P	ENST00000398568	NM_001042412.1	752	cAg/cCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829644	72829644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	239	980	0	ENST00000268489.5:c.6937C>T	p.Arg2313Cys	p.R2313C	ENST00000268489	NM_006885.3	2313	Cgt/Tgt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15989642	15989642	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	41	442	0	ENST00000268712.3:c.3131T>C	p.Val1044Ala	p.V1044A	ENST00000268712	NM_006311.3	1044	gTg/gCg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40354379	40354379	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	287	1333	2	ENST00000293328.3:c.2216A>G	p.His739Arg	p.H739R	ENST00000293328	NM_012448.3	739	cAc/cGc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2191128	2191128	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	271	1103	0	ENST00000398665.3:c.382T>C	p.Tyr128His	p.Y128H	ENST00000398665	NM_032482.2	128	Tac/Cac																																																																															
UPF1	5976	MSKCC	GRCh37	19	18961494	18961494	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	114	407	0	ENST00000262803.5:c.630-3C>T		p.X210_splice	ENST00000262803	NM_002911.3	210																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36223601	36223601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	161	1043	3	ENST00000222270.7:c.6151G>A	p.Ala2051Thr	p.A2051T	ENST00000222270	NM_014727.1	2051	Gct/Act																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44514781	44514781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	42	641	0	ENST00000291552.4:c.466C>T	p.Arg156Cys	p.R156C	ENST00000291552	NM_006758.2	156	Cgt/Tgt																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655163	45655163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	138	501	0	ENST00000407780.3:c.689G>A	p.Ser230Asn	p.S230N	ENST00000407780	NM_001283052.1	230	aGc/aAc																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458270	12458270	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	244	924	2	ENST00000287820.6:c.892del	p.Leu298CysfsTer38	p.L298Cfs*38	ENST00000287820	NM_015869.4	296	aCc/ac																																																																															
MST1R	4486	MSKCC	GRCh37	3	49935635	49935635	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	213	807	0	ENST00000296474.3:c.1729delC	p.His577ThrfsTer5	p.H577Tfs*5	ENST00000296474	NM_002447.2	577	Cac/ac																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940877	49940877	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	52	929	0	ENST00000296474.3:c.166C>T	p.Gln56Ter	p.Q56*	ENST00000296474	NM_002447.2	56	Cag/Tag																																																																															
ATR	545	MSKCC	GRCh37	3	142212111	142212111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	279	857	0	ENST00000350721.4:c.5941G>A	p.Glu1981Lys	p.E1981K	ENST00000350721	NM_001184.3	1981	Gaa/Aaa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	202	855	4	ENST00000382891.5:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382891	NM_133335.3	1341	Ccc/cc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245393	153245393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	457	967	0	ENST00000281708.4:c.1798G>T	p.Asp600Tyr	p.D600Y	ENST00000281708	NM_033632.3	600	Gat/Tat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187519189	187519189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	263	926	1	ENST00000441802.2:c.12194del	p.Gly4065AlafsTer141	p.G4065Afs*141	ENST00000441802	NM_005245.3	4065	gGc/gc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31431755	31431755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	239	914	0	ENST00000344624.3:c.3073G>A	p.Ala1025Thr	p.A1025T	ENST00000344624		1025	Gct/Act																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500450	149500450	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs112566969		P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	44	629	0	ENST00000261799.4:c.2586+1G>A		p.X862_splice	ENST00000261799	NM_002609.3	862																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176517791	176517791	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	75	1016	2	ENST00000292408.4:c.401G>T	p.Arg134Met	p.R134M	ENST00000292408	NM_213647.1	134	aGg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945695	151945695	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	238	879	1	ENST00000262189.6:c.1824A>T	p.Gln608His	p.Q608H	ENST00000262189	NM_170606.2	608	caA/caT																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538979	23538979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	174	789	0	ENST00000380871.4:c.460C>T	p.Arg154Trp	p.R154W	ENST00000380871	NM_006167.3	154	Cgg/Tgg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69005894	69005894	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	118	891	3	ENST00000288368.4:c.2305C>T	p.Gln769Ter	p.Q769*	ENST00000288368	NM_024870.2	769	Caa/Taa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319854	8319854	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	173	705	0	ENST00000356435.5:c.5647C>T	p.Arg1883Ter	p.R1883*	ENST00000356435		1883	Cga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486067	8486067	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	167	845	0	ENST00000356435.5:c.2750T>C	p.Val917Ala	p.V917A	ENST00000356435		917	gTa/gCa																																																																															
PAX5	5079	MSKCC	GRCh37	9	36846912	36846912	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139738432		P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	129	601	0	ENST00000358127.4:c.1027G>A	p.Gly343Arg	p.G343R	ENST00000358127	NM_001280556.1	343	Ggg/Agg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781060	135781061	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	209	874	2	ENST00000298552.3:c.1904_1905del	p.Thr635ArgfsTer52	p.T635Rfs*52	ENST00000298552	NM_001162426.1	635	aCA/a																																																																															
ARAF	369	MSKCC	GRCh37	X	47426094	47426094	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	58	1204	0	ENST00000377045.4:c.619delC	p.Leu207TyrfsTer85	p.L207Yfs*85	ENST00000377045	NM_001654.4	205	gCc/gc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0016125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	289	652	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	251	686	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934578		P-0016127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	96	554	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944853	131944853	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	68	438	0	ENST00000265335.6:c.2874G>T	p.Met958Ile	p.M958I	ENST00000265335		958	atG/atT																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098975	178098975	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	76	382	0	ENST00000397062.3:c.70T>A	p.Trp24Arg	p.W24R	ENST00000397062	NM_006164.4	24	Tgg/Agg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207011	1207026	+	frameshift_variant	Frame_Shift_Del	DEL	GGTCATCTACCAGCCG	GGTCATCTACCAGCCG	-			P-0016127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	106	565	0	ENST00000326873.7:c.99_114del	p.Glu33AspfsTer13	p.E33Dfs*13	ENST00000326873	NM_000455.4	33	gaGGTCATCTACCAGCCG/ga																																																																															
BTK	695	MSKCC	GRCh37	X	100615709	100615709	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	130	648	0	ENST00000308731.7:c.623C>A	p.Ala208Glu	p.A208E	ENST00000308731	NM_000061.2	208	gCa/gAa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806119	1806119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	12	722	0	ENST00000260795.2:c.1138G>A	p.Gly380Arg	p.G380R	ENST00000260795		380	Ggg/Agg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	364	445	0	ENST00000346208.3:c.1275dupA	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101445	27101446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	279	549	0	ENST00000324856.7:c.4729dup	p.Ser1577LysfsTer26	p.S1577Kfs*26	ENST00000324856	NM_006015.4	1576	cca/ccAa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274172	10274172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	51	420	0	ENST00000330684.3:c.97G>A	p.Ala33Thr	p.A33T	ENST00000330684	NM_001134407.1	33	Gcg/Acg																																																																															
MITF	4286	MSKCC	GRCh37	3	69998263	69998263	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	86	671	0	ENST00000352241.4:c.824T>C	p.Leu275Pro	p.L275P	ENST00000352241	NM_198159.2	275	cTc/cCc																																																																															
MET	4233	MSKCC	GRCh37	7	116399465	116399465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	129	557	0	ENST00000397752.3:c.2285G>A	p.Gly762Asp	p.G762D	ENST00000397752	NM_000245.2	762	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	97	457	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1206165503		P-0016134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	288	923	0	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495732	72495732	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	190	609	0	ENST00000477973.2:c.338del	p.Trp114GlyfsTer22	p.W114Gfs*22	ENST00000477973	NM_012234.5	114	Tgg/gg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0016135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	188	399	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458435	120458436	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0016135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	36	454	0	ENST00000256646.2:c.6909dupC	p.Ile2304HisfsTer9	p.I2304Hfs*9	ENST00000256646	NM_024408.3	2303	-/C																																																																															
CDH1	999	MSKCC	GRCh37	16	68842686	68842686	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	187	652	0	ENST00000261769.5:c.622G>T	p.Glu208Ter	p.E208*	ENST00000261769	NM_004360.3	208	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	1241	531	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249011	55249012	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAACCCCCACGG			P-0016139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	780	497	0	ENST00000275493.2:c.2320_2321insGCAACCCCCACG	p.His773_Val774insGlyAsnProHis	p.H773_V774insGNPH	ENST00000275493	NM_005228.3	770	gac/gaCAACCCCCACGGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	320	414	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197399	26197399	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	61	163	0	ENST00000356476.2:c.80G>T	p.Arg27Leu	p.R27L	ENST00000356476		27	cGa/cTa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117715883	117715883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	117	436	1	ENST00000368508.3:c.875G>T	p.Trp292Leu	p.W292L	ENST00000368508	NM_002944.2	292	tGg/tTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0016145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	33	364	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0016145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	96	372	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
FAT1	2195	MSKCC	GRCh37	4	187627752	187627752	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1723	106	438	0	ENST00000441802.2:c.3230C>G	p.Ser1077Cys	p.S1077C	ENST00000441802	NM_005245.3	1077	tCt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016146-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			288	142	622	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663346	227663346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1024227751		P-0016146-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			259	34	422	0	ENST00000305123.5:c.109G>A	p.Glu37Lys	p.E37K	ENST00000305123	NM_005544.2	37	Gag/Aag																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165634	118165648	+	inframe_deletion	In_Frame_Del	DEL	GAAGGACATCGTCCA	GAAGGACATCGTCCA	-			P-0016146-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			446	47	346	0	ENST00000369448.3:c.146_160del	p.Lys49_Gln53del	p.K49_Q53del	ENST00000369448	NM_017709.3	48	ctGAAGGACATCGTCCAg/ctg																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154873	2154873	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016146-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			488	152	848	0	ENST00000434045.2:c.348C>G	p.Ser116Arg	p.S116R	ENST00000434045	NM_001127598.1	116	agC/agG																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724875	43724875	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0016146-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			157	63	372	0	ENST00000382044.4:c.3192G>C	p.Arg1064Ser	p.R1064S	ENST00000382044	NM_001141980.1	1064	agG/agC																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114679	73114679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016146-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			388	50	650	0	ENST00000356692.5:c.1060G>A	p.Ala354Thr	p.A354T	ENST00000356692		354	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0016151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	482	387	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348795	11348795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	79	151	0	ENST00000332029.2:c.541C>T	p.Arg181Cys	p.R181C	ENST00000332029	NM_003745.1	181	Cgc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255617	16255617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	129	285	0	ENST00000375759.3:c.2883del	p.Lys962SerfsTer12	p.K962Sfs*12	ENST00000375759	NM_015001.2	961	aGg/ag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692932	89692932	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	78	408	0	ENST00000371953.3:c.416T>C	p.Leu139Ser	p.L139S	ENST00000371953	NM_000314.4	139	tTa/tCa																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778095	27778099	+	frameshift_variant	Frame_Shift_Del	DEL	GACTT	GACTT	C			P-0016151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	80	249	0	ENST00000369163.2:c.244_248delinsC	p.Asp82ArgfsTer8	p.D82Rfs*8	ENST00000369163	NM_003536.2	82	GACTTg/Cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0016159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	237	467	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866662	37866662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	1071	653	1	ENST00000269571.5:c.829G>T	p.Asp277Tyr	p.D277Y	ENST00000269571		277	Gac/Tac																																																																															
RB1	5925	MSKCC	GRCh37	13	48954187	48954187	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0016159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	112	286	0	ENST00000267163.4:c.1390-2A>G		p.X464_splice	ENST00000267163	NM_000321.2	464																																																																																
CTCF	10664	MSKCC	GRCh37	16	67645919	67645919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	77	626	1	ENST00000264010.4:c.847C>T	p.Arg283Cys	p.R283C	ENST00000264010	NM_006565.3	283	Cgt/Tgt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160648	56160663	+	frameshift_variant	Frame_Shift_Del	DEL	GTTAACAAAGTGATGC	GTTAACAAAGTGATGC	-			P-0016162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	47	488	0	ENST00000399503.3:c.923_938del	p.Val308GlyfsTer10	p.V308Gfs*10	ENST00000399503	NM_005921.1	308	GTTAACAAAGTGATGCgg/gg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178643	56178643	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	36	296	0	ENST00000399503.3:c.3617del	p.Pro1206LeufsTer39	p.P1206Lfs*39	ENST00000399503	NM_005921.1	1206	Cct/ct																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0016164-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			379	95	644	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871692	35871692	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016164-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			262	98	405	0	ENST00000216797.5:c.814C>G	p.Leu272Val	p.L272V	ENST00000216797	NM_020529.2	272	Ctg/Gtg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50828170	50828180	+	protein_altering_variant	In_Frame_Del	DEL	ACTTCCCAAAG	ACTTCCCAAAG	TT			P-0016164-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			306	41	550	2	ENST00000398568.2:c.2508_2518delinsTT	p.Leu837_Asp840delinsTyr	p.L837_D840delinsY	ENST00000398568	NM_001042412.1	836	tcACTTCCCAAAGac/tcTTac																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161413	55161413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016164-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			409	32	433	0	ENST00000257290.5:c.3244G>A	p.Asp1082Asn	p.D1082N	ENST00000257290	NM_006206.4	1082	Gac/Aac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44928824	44928824	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016164-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			184	15	282	0	ENST00000377967.4:c.1924G>A	p.Gly642Arg	p.G642R	ENST00000377967	NM_021140.2	642	Ggg/Agg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0016165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	188	669	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
SPOP	8405	MSKCC	GRCh37	17	47677814	47677814	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	93	699	0	ENST00000347630.2:c.1051G>C	p.Glu351Gln	p.E351Q	ENST00000347630	NM_001007230.1	351	Gag/Cag																																																																															
SESN1	27244	MSKCC	GRCh37	6	109322692	109322692	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0016165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	77	583	0	ENST00000436639.2:c.346-1G>A		p.X116_splice	ENST00000436639	NM_014454.2	116																																																																																
AGO2	27161	MSKCC	GRCh37	8	141554344	141554344	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	137	822	1	ENST00000220592.5:c.1807G>T	p.Ala603Ser	p.A603S	ENST00000220592	NM_012154.3	603	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0016169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	295	650	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	256	769	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176675248	176675248	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201483724		P-0016169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	139	311	1	ENST00000439151.2:c.4564G>A	p.Asp1522Asn	p.D1522N	ENST00000439151	NM_022455.4	1522	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112173669	112173670	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0016169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	197	436	0	ENST00000257430.4:c.2379_2380del	p.Tyr796TrpfsTer2	p.Y796Wfs*2	ENST00000257430	NM_000038.5	793	cAA/c																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653829	89653829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	151	530	0	ENST00000371953.3:c.127G>A	p.Glu43Lys	p.E43K	ENST00000371953	NM_000314.4	43	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175747	112175748	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0016169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	134	340	0	ENST00000257430.4:c.4456_4457del	p.Asp1486TyrfsTer27	p.D1486Yfs*27	ENST00000257430	NM_000038.5	1486	GAt/t																																																																															
MYCL1	4610	MSKCC	GRCh37	1	40367491	40367491	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	10	30	0	ENST00000397332.2:c.70G>T	p.Gly24Cys	p.G24C	ENST00000397332	NM_001033082.2	24	Ggc/Tgc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163318761	163318761	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	136	723	0	ENST00000271452.3:c.1151G>T	p.Arg384Ile	p.R384I	ENST00000271452	NM_145697.2	384	aGa/aTa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106098	8106098	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	79	438	0	ENST00000346208.3:c.918G>T	p.Arg306Ser	p.R306S	ENST00000346208		306	agG/agT																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852781	63852781	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	50	436	0	ENST00000279873.7:c.3559A>G	p.Lys1187Glu	p.K1187E	ENST00000279873	NM_032199.2	1187	Aaa/Gaa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123310883	123310883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	142	456	0	ENST00000358487.5:c.545G>T	p.Gly182Val	p.G182V	ENST00000358487	NM_000141.4	182	gGg/gTg																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589655	69589655	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	26	119	0	ENST00000168712.1:c.198G>T	p.Glu66Asp	p.E66D	ENST00000168712	NM_002007.2	66	gaG/gaT																																																																															
CBL	867	MSKCC	GRCh37	11	119148933	119148933	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	179	611	0	ENST00000264033.4:c.1153G>T	p.Ala385Ser	p.A385S	ENST00000264033	NM_005188.3	385	Gct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	256	636	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134018	41134018	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	64	344	0	ENST00000379561.5:c.1610G>T	p.Arg537Leu	p.R537L	ENST00000379561	NM_002015.3	537	cGt/cTt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437878	110437878	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	19	84	2	ENST00000375856.3:c.523G>T	p.Ala175Ser	p.A175S	ENST00000375856	NM_003749.2	175	Gcc/Tcc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88726646	88726646	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	79	468	0	ENST00000360948.2:c.395+3G>T		p.X132_splice	ENST00000360948	NM_001012338.2	132																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81971386	81971386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	51	535	0	ENST00000359376.3:c.3076G>T	p.Ala1026Ser	p.A1026S	ENST00000359376	NM_002661.3	1026	Gca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057520005		P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	361	716	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																															
NF1	4763	MSKCC	GRCh37	17	29559143	29559151	+	inframe_deletion	In_Frame_Del	DEL	CCTCTGCAG	CCTCTGCAG	-			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	85	358	0	ENST00000358273.4:c.3253_3261del	p.Leu1085_Pro1087del	p.L1085_P1087del	ENST00000358273	NM_001042492.2	1084	CCTCTGCAG/-																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58711260	58711260	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	263	651	1	ENST00000305921.3:c.748C>T	p.Arg250Ter	p.R250*	ENST00000305921	NM_003620.3	250	Cga/Tga																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942170	17942170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	75	485	0	ENST00000458235.1:c.2845G>T	p.Asp949Tyr	p.D949Y	ENST00000458235	NM_000215.3	949	Gac/Tac																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463268	25463268	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	46	526	0	ENST00000264709.3:c.2225G>C	p.Arg742Pro	p.R742P	ENST00000264709	NM_175629.2	742	cGg/cCg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212652843	212652843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	38	551	0	ENST00000342788.4:c.463C>T	p.Leu155Phe	p.L155F	ENST00000342788	NM_005235.2	155	Ctt/Ttt																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458235	12458235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	263	496	0	ENST00000287820.6:c.852G>A	p.Met284Ile	p.M284I	ENST00000287820	NM_015869.4	284	atG/atA																																																																															
ATR	545	MSKCC	GRCh37	3	142286997	142286997	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	159	441	0	ENST00000350721.4:c.60-1G>C		p.X20_splice	ENST00000350721	NM_001184.3	20																																																																																
KDR	3791	MSKCC	GRCh37	4	55956195	55956195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	112	597	0	ENST00000263923.4:c.3120C>A	p.Asn1040Lys	p.N1040K	ENST00000263923	NM_002253.2	1040	aaC/aaA																																																																															
TET2	54790	MSKCC	GRCh37	4	106157911	106157911	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	74	418	0	ENST00000380013.4:c.2812A>T	p.Thr938Ser	p.T938S	ENST00000380013	NM_001127208.2	938	Act/Tct																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143094924	143094924	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	46	493	0	ENST00000262992.4:c.1220C>G	p.Thr407Arg	p.T407R	ENST00000262992	NM_001101669.1	407	aCa/aGa																																																																															
TERT	7015	MSKCC	GRCh37	5	1255515	1255515	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	99	470	0	ENST00000310581.5:c.3044G>T	p.Cys1015Phe	p.C1015F	ENST00000310581	NM_198253.2	1015	tGt/tTt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526384	31526384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	509	929	0	ENST00000344624.3:c.656G>T	p.Arg219Ile	p.R219I	ENST00000344624		219	aGa/aTa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876172	35876172	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	331	491	0	ENST00000303115.3:c.964G>C	p.Gly322Arg	p.G322R	ENST00000303115	NM_002185.3	322	Ggt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	72	474	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673436	30673436	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	79	442	0	ENST00000376406.3:c.3524A>T	p.Asp1175Val	p.D1175V	ENST00000376406	NM_014641.2	1175	gAc/gTc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967900	93967900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	94	691	1	ENST00000369303.4:c.2027G>A	p.Arg676Lys	p.R676K	ENST00000369303	NM_004440.3	676	aGg/aAg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739753	41739753	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	63	614	0	ENST00000242208.4:c.220G>T	p.Val74Phe	p.V74F	ENST00000242208	NM_002192.2	74	Gtc/Ttc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389359	8389359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	88	596	1	ENST00000356435.5:c.4259G>T	p.Arg1420Met	p.R1420M	ENST00000356435		1420	aGg/aTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485815	8485815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	94	297	0	ENST00000356435.5:c.3002G>T	p.Gly1001Val	p.G1001V	ENST00000356435		1001	gGg/gTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528612	8528612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	84	452	2	ENST00000356435.5:c.520C>A	p.Arg174Ser	p.R174S	ENST00000356435		174	Cgt/Agt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528672	8528672	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	72	363	1	ENST00000356435.5:c.460G>T	p.Asp154Tyr	p.D154Y	ENST00000356435		154	Gat/Tat																																																																															
ABL1	25	MSKCC	GRCh37	9	133750337	133750337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	88	532	0	ENST00000318560.5:c.1168G>A	p.Gly390Arg	p.G390R	ENST00000318560	NM_005157.4	390	Ggg/Agg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038822	47038822	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	104	678	0	ENST00000329236.7:c.598C>T	p.Gln200Ter	p.Q200*	ENST00000329236	NM_001204466.1	200	Cag/Tag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223539	53223539	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	55	386	0	ENST00000375401.3:c.3820G>C	p.Glu1274Gln	p.E1274Q	ENST00000375401	NM_004187.3	1274	Gag/Cag																																																																															
ATRX	546	MSKCC	GRCh37	X	76763931	76763931	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	82	524	0	ENST00000373344.5:c.7377G>T	p.Met2459Ile	p.M2459I	ENST00000373344	NM_000489.3	2459	atG/atT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	364	658	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
RB1	5925	MSKCC	GRCh37	13	48923160	48923160	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	92	425	0	ENST00000267163.4:c.607+1G>T		p.X203_splice	ENST00000267163	NM_000321.2	203																																																																																
HGF	3082	MSKCC	GRCh37	7	81335667	81335667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	85	643	0	ENST00000222390.5:c.1693C>T	p.Leu565Phe	p.L565F	ENST00000222390	NM_000601.4	565	Ctc/Ttc																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505595	186505595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	62	402	1	ENST00000323963.5:c.1003C>T	p.Arg335Cys	p.R335C	ENST00000323963		335	Cgc/Tgc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925711	114925711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	33	490	0	ENST00000543371.1:c.1789G>A	p.Val597Ile	p.V597I	ENST00000543371	NM_001198531.1	597	Gtc/Atc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267359	198267359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	186	658	0	ENST00000335508.6:c.1998G>T	p.Lys666Asn	p.K666N	ENST00000335508	NM_012433.2	666	aaG/aaT																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291782	15291782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	62	619	0	ENST00000263388.2:c.2984C>T	p.Pro995Leu	p.P995L	ENST00000263388	NM_000435.2	995	cCg/cTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11317040	11317040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	232	432	3	ENST00000361445.4:c.454G>A	p.Ala152Thr	p.A152T	ENST00000361445	NM_004958.3	152	Gcc/Acc																																																																															
MPL	4352	MSKCC	GRCh37	1	43803598	43803598	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	22	517	2	ENST00000372470.3:c.79G>A	p.Asp27Asn	p.D27N	ENST00000372470	NM_005373.2	27	Gat/Aat																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741616	17741616	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	60	241	0	ENST00000250003.3:c.287G>T	p.Trp96Leu	p.W96L	ENST00000250003	NM_002478.4	96	tGg/tTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46242706	46242706	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	231	511	0	ENST00000334344.6:c.1668A>T	p.Leu556Phe	p.L556F	ENST00000334344	NM_152641.2	556	ttA/ttT																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914267	32914267	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	109	525	0	ENST00000380152.3:c.5775G>T	p.Gln1925His	p.Q1925H	ENST00000380152		1925	caG/caT																																																																															
BRCA2	675	MSKCC	GRCh37	13	32944663	32944663	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	138	554	0	ENST00000380152.3:c.8456A>T	p.Asp2819Val	p.D2819V	ENST00000380152		2819	gAt/gTt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724576	43724576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	89	786	1	ENST00000382044.4:c.3491G>T	p.Cys1164Phe	p.C1164F	ENST00000382044	NM_001141980.1	1164	tGt/tTt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678508	88678508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	63	439	3	ENST00000360948.2:c.1028G>T	p.Arg343Leu	p.R343L	ENST00000360948	NM_001012338.2	343	cGg/cTg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226265	2226265	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	104	526	0	ENST00000326181.6:c.1879-1G>T		p.X627_splice	ENST00000326181	NM_032271.2	627																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81972403	81972403	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	75	357	0	ENST00000359376.3:c.3199-3C>G		p.X1067_splice	ENST00000359376	NM_002661.3	1067																																																																																
ERCC3	2071	MSKCC	GRCh37	2	128046263	128046263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	108	509	2	ENST00000285398.2:c.1000C>T	p.Arg334Cys	p.R334C	ENST00000285398	NM_000122.1	334	Cgt/Tgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743901	40743901	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	122	590	0	ENST00000373198.4:c.3094G>T	p.Val1032Phe	p.V1032F	ENST00000373198	NM_133170.3	1032	Gtc/Ttc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72873629	72873629	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	76	567	0	ENST00000325599.8:c.673A>G	p.Lys225Glu	p.K225E	ENST00000325599	NM_018130.2	225	Aaa/Gaa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391007	89391007	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	67	596	0	ENST00000336596.2:c.1073C>A	p.Thr358Asn	p.T358N	ENST00000336596	NM_005233.5	358	aCc/aAc																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84406209	84406209	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	86	379	0	ENST00000321945.7:c.17C>A	p.Thr6Lys	p.T6K	ENST00000321945	NM_139076.2	6	aCg/aAg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526324	31526324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	147	731	0	ENST00000344624.3:c.716G>T	p.Gly239Val	p.G239V	ENST00000344624		239	gGg/gTg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149514333	149514333	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	66	402	1	ENST00000261799.4:c.611A>T	p.Tyr204Phe	p.Y204F	ENST00000261799	NM_002609.3	204	tAc/tTc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707798	176707798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	121	500	0	ENST00000439151.2:c.5855G>T	p.Arg1952Leu	p.R1952L	ENST00000439151	NM_022455.4	1952	cGg/cTg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168950	32168950	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	336	686	0	ENST00000375023.3:c.4083G>C	p.Glu1361Asp	p.E1361D	ENST00000375023	NM_004557.3	1361	gaG/gaC																																																																															
ROS1	6098	MSKCC	GRCh37	6	117730786	117730786	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	212	569	0	ENST00000368508.3:c.248G>T	p.Gly83Val	p.G83V	ENST00000368508	NM_002944.2	83	gGc/gTc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367257	50367257	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	73	376	0	ENST00000331340.3:c.64G>C	p.Asp22His	p.D22H	ENST00000331340	NM_006060.4	22	Gat/Cat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945044	151945044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	26	458	0	ENST00000262189.6:c.2475G>T	p.Met825Ile	p.M825I	ENST00000262189	NM_170606.2	825	atG/atT																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741634	145741634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	182	624	0	ENST00000428558.2:c.869G>T	p.Gly290Val	p.G290V	ENST00000428558	NM_004260.3	290	gGg/gTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518262	8518262	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	173	294	0	ENST00000356435.5:c.1129C>A	p.Arg377Ser	p.R377S	ENST00000356435		377	Cgc/Agc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139403335	139403335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	156	421	0	ENST00000277541.6:c.3158G>T	p.Gly1053Val	p.G1053V	ENST00000277541	NM_017617.3	1053	gGc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579374	7579376	+	missense_variant	Missense_Mutation	ONP	CCT	CCT	ACA			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	607	226	0	ENST00000269305.4:c.311_313delinsTGT	p.Gln104_Gly105delinsLeuCys	p.Q104_G105delinsLC	ENST00000269305	NM_001126112.2	104	cAGGgc/cTGTgc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	133	567	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391024	89391024	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	145	636	0	ENST00000336596.2:c.1095delA	p.Lys365AsnfsTer6	p.K365Nfs*6	ENST00000336596	NM_005233.5	364	Aaa/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	138	513	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	110	447	2	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	148	561	0	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	250	509	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	128	622	0	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141426	11141426	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11537676		P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	75	574	2	ENST00000344626.4:c.3403C>T	p.Arg1135Trp	p.R1135W	ENST00000344626	NM_003072.3	1135	Cgg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	31	160	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553591	106553591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	82	338	0	ENST00000369096.4:c.1556C>T	p.Ala519Val	p.A519V	ENST00000369096	NM_001198.3	519	gCg/gTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98215787	98215787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	151	575	1	ENST00000331920.6:c.3422C>T	p.Ala1141Val	p.A1141V	ENST00000331920	NM_000264.3	1141	gCg/gTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11217234	11217234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	134	557	0	ENST00000361445.4:c.4444C>T	p.Arg1482Cys	p.R1482C	ENST00000361445	NM_004958.3	1482	Cgc/Tgc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	122	608	0	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097624	11097625	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1165714406		P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	79	681	1	ENST00000344626.4:c.810dup	p.Gly271ArgfsTer16	p.G271Rfs*16	ENST00000344626	NM_003072.3	268	-/C																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40375459	40375459	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	157	662	2	ENST00000293328.3:c.491del	p.Lys164SerfsTer17	p.K164Sfs*17	ENST00000293328	NM_012448.3	164	aAg/ag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435128	110435129	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs772322568		P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	104	595	1	ENST00000375856.3:c.3272dup	p.Lys1092GlufsTer233	p.K1092Efs*233	ENST00000375856	NM_003749.2	1091	ccg/ccCg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129130	152129130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	164	687	2	ENST00000206249.3:c.83G>A	p.Arg28His	p.R28H	ENST00000206249	NM_000125.3	28	cGt/cAt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265353	152265353	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188957694		P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	75	390	0	ENST00000206249.3:c.806G>A	p.Arg269His	p.R269H	ENST00000206249	NM_000125.3	269	cGc/cAc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	105	521	2	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943776	9943776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	112	448	0	ENST00000330684.3:c.1165G>A	p.Val389Met	p.V389M	ENST00000330684	NM_001134407.1	389	Gtg/Atg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	147	673	0	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912346	32912346	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	115	427	0	ENST00000380152.3:c.3860del	p.Asn1287IlefsTer6	p.N1287Ifs*6	ENST00000380152		1285	gAa/ga																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138478130	138478130	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148660928		P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	49	510	1	ENST00000289153.2:c.56C>T	p.Ala19Val	p.A19V	ENST00000289153	NM_006219.2	19	gCg/gTg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784944	9784944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	137	540	0	ENST00000377346.4:c.2947G>A	p.Ala983Thr	p.A983T	ENST00000377346	NM_005026.3	983	Gcg/Acg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11303205	11303205	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	147	584	1	ENST00000361445.4:c.1378C>T	p.Arg460Ter	p.R460*	ENST00000361445	NM_004958.3	460	Cga/Tga																																																																															
TET1	80312	MSKCC	GRCh37	10	70406444	70406444	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149434944		P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	176	584	2	ENST00000373644.4:c.3958C>T	p.Arg1320Trp	p.R1320W	ENST00000373644	NM_030625.2	1320	Cgg/Tgg																																																																															
TET1	80312	MSKCC	GRCh37	10	70406445	70406445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	189	585	0	ENST00000373644.4:c.3959G>A	p.Arg1320Gln	p.R1320Q	ENST00000373644	NM_030625.2	1320	cGg/cAg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88676898	88676898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	191	513	0	ENST00000372037.3:c.683G>A	p.Arg228Gln	p.R228Q	ENST00000372037	NM_004329.2	228	cGa/cAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903697	114903697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	64	690	0	ENST00000543371.1:c.701C>A	p.Pro234Gln	p.P234Q	ENST00000543371	NM_001198531.1	234	cCg/cAg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941004	71941004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	144	675	0	ENST00000298229.2:c.884delC	p.Pro295GlnfsTer20	p.P295Qfs*20	ENST00000298229	NM_001567.3	294	Ccc/cc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998981	100998981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	75	472	2	ENST00000325455.5:c.821G>A	p.Arg274His	p.R274H	ENST00000325455	NM_001202474.3	274	cGc/cAc																																																																															
SDHD	6392	MSKCC	GRCh37	11	111959695	111959695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	55	327	0	ENST00000375549.3:c.274G>A	p.Asp92Asn	p.D92N	ENST00000375549	NM_003002.3	92	Gac/Aac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49415917	49415917	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	61	395	1	ENST00000301067.7:c.16430del	p.Cys5477LeufsTer10	p.C5477Lfs*10	ENST00000301067	NM_003482.3	5477	tGt/tt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445287	49445287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	158	769	0	ENST00000301067.7:c.2179C>T	p.Pro727Ser	p.P727S	ENST00000301067	NM_003482.3	727	Cca/Tca																																																																															
POLE	5426	MSKCC	GRCh37	12	133235899	133235899	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	68	379	0	ENST00000320574.5:c.3257G>T	p.Gly1086Val	p.G1086V	ENST00000320574	NM_006231.2	1086	gGc/gTc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30108083	30108084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	169	589	0	ENST00000331968.5:c.723dup	p.Gly242TrpfsTer19	p.G242Wfs*19	ENST00000331968	NM_002742.2	241	-/T																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396475	30396475	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	32	419	0	ENST00000331968.5:c.244T>C	p.Cys82Arg	p.C82R	ENST00000331968	NM_002742.2	82	Tgc/Cgc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986679	36986679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	11	17	0	ENST00000354822.5:c.1010G>A	p.Gly337Asp	p.G337D	ENST00000354822	NM_001079668.2	337	gGc/gAc																																																																															
B2M	567	MSKCC	GRCh37	15	45007726	45007729	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	109	408	0	ENST00000558401.1:c.176_179del	p.Leu59Ter	p.L59*	ENST00000558401	NM_004048.2	58	gACTTa/ga																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66777482	66777482	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144080051		P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	128	461	2	ENST00000307102.5:c.848C>T	p.Ala283Val	p.A283V	ENST00000307102	NM_002755.3	283	gCg/gTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121819	2121819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	125	599	1	ENST00000219476.3:c.1981G>A	p.Gly661Ser	p.G661S	ENST00000219476	NM_000548.3	661	Ggc/Agc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777892	3777892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	178	794	1	ENST00000262367.5:c.7156G>A	p.Gly2386Arg	p.G2386R	ENST00000262367	NM_004380.2	2386	Gga/Aga																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30128558	30128558	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	138	503	0	ENST00000263025.4:c.824T>C	p.Met275Thr	p.M275T	ENST00000263025	NM_002746.2	275	aTg/aCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991703	72991703	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201821212		P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	26	207	0	ENST00000268489.5:c.2342C>T	p.Ala781Val	p.A781V	ENST00000268489	NM_006885.3	781	gCg/gTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993536	72993536	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	93	452	0	ENST00000268489.5:c.509T>C	p.Phe170Ser	p.F170S	ENST00000268489	NM_006885.3	170	tTc/tCc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351923	89351923	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147744268		P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	174	839	3	ENST00000301030.4:c.1027G>A	p.Val343Ile	p.V343I	ENST00000301030	NM_001256183.1	343	Gtc/Atc																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805768	46805768	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199813155		P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	100	524	0	ENST00000290295.7:c.188G>A	p.Cys63Tyr	p.C63Y	ENST00000290295	NM_006361.5	63	tGc/tAc																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733223	74733223	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	107	479	0	ENST00000359995.5:c.20del	p.Pro7LeufsTer7	p.P7Lfs*7	ENST00000359995	NM_001195427.1	7	cCt/ct																																																																															
GNA11	2767	MSKCC	GRCh37	19	3121052	3121052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	178	719	1	ENST00000078429.4:c.955G>A	p.Asp319Asn	p.D319N	ENST00000078429	NM_002067.2	319	Gac/Aac																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10248625	10248625	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	62	472	0	ENST00000340748.4:c.4128G>T	p.Glu1376Asp	p.E1376D	ENST00000340748		1376	gaG/gaT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11095950	11095950	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	119	548	0	ENST00000344626.4:c.224C>A	p.Pro75His	p.P75H	ENST00000344626	NM_003072.3	75	cCc/cAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272170	15272170	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	102	433	0	ENST00000263388.2:c.6269G>C	p.Gly2090Ala	p.G2090A	ENST00000263388	NM_000435.2	2090	gGc/gCc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216712	36216712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	36	391	2	ENST00000222270.7:c.3878G>A	p.Arg1293His	p.R1293H	ENST00000222270	NM_014727.1	1293	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227874	36227875	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	81	734	0	ENST00000222270.7:c.7363_7364del	p.Ser2455LeufsTer2	p.S2455Lfs*2	ENST00000222270	NM_014727.1	2453	caTCtc/catc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085755	16085755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	112	552	3	ENST00000281043.3:c.931G>A	p.Gly311Arg	p.G311R	ENST00000281043	NM_005378.4	311	Ggg/Agg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39294788	39294788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	125	522	0	ENST00000402219.2:c.194G>A	p.Arg65Gln	p.R65Q	ENST00000402219	NM_005633.3	65	cGa/cAa																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46574053	46574053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	141	509	1	ENST00000263734.3:c.68C>T	p.Ala23Val	p.A23V	ENST00000263734	NM_001430.4	23	gCg/gTg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99154342	99154342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	96	404	0	ENST00000074304.5:c.484C>T	p.Arg162Cys	p.R162C	ENST00000074304	NM_001134224.1	162	Cgt/Tgt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198273135	198273135	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	66	490	0	ENST00000335508.6:c.1075C>G	p.Pro359Ala	p.P359A	ENST00000335508	NM_012433.2	359	Cca/Gca																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434237	12434237	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	128	512	0	ENST00000287820.6:c.605G>T	p.Gly202Val	p.G202V	ENST00000287820	NM_015869.4	202	gGg/gTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161871	47161871	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	59	509	1	ENST00000409792.3:c.4255G>T	p.Gly1419Cys	p.G1419C	ENST00000409792	NM_014159.6	1419	Ggt/Tgt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205850	128205850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	58	253	0	ENST00000341105.2:c.25C>T	p.Arg9Cys	p.R9C	ENST00000341105	NM_032638.4	9	Cgc/Tgc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38953109	38953109	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	35	335	0	ENST00000357387.3:c.2875T>G	p.Cys959Gly	p.C959G	ENST00000357387	NM_152756.3	959	Tgt/Ggt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500798	149500798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	143	531	1	ENST00000261799.4:c.2432C>T	p.Ala811Val	p.A811V	ENST00000261799	NM_002609.3	811	gCc/gTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043956	180043956	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	77	626	0	ENST00000261937.6:c.3040C>G	p.Leu1014Val	p.L1014V	ENST00000261937	NM_182925.4	1014	Ctt/Gtt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170042	32170042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	189	683	0	ENST00000375023.3:c.3566C>T	p.Ala1189Val	p.A1189V	ENST00000375023	NM_004557.3	1189	gCt/gTt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117700222	117700222	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	116	507	0	ENST00000368508.3:c.2597G>A	p.Ser866Asn	p.S866N	ENST00000368508	NM_002944.2	866	aGc/aAc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148543608	148543608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	76	580	0	ENST00000320356.2:c.200C>A	p.Pro67His	p.P67H	ENST00000320356	NM_004456.4	67	cCt/cAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151882716	151882716	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	22	239	0	ENST00000262189.6:c.5009A>T	p.Asp1670Val	p.D1670V	ENST00000262189	NM_170606.2	1670	gAt/gTt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300040	137300040	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	148	729	1	ENST00000481739.1:c.331del	p.Leu111TrpfsTer57	p.L111Wfs*57	ENST00000481739	NM_002957.4	109	Ccc/cc																																																																															
AR	367	MSKCC	GRCh37	X	66765317	66765317	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	67	672	0	ENST00000374690.3:c.329T>A	p.Leu110Gln	p.L110Q	ENST00000374690	NM_000044.3	110	cTg/cAg																																																																															
MED12	9968	MSKCC	GRCh37	X	70350027	70350027	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	79	513	0	ENST00000374080.3:c.4013del	p.Asn1338ThrfsTer7	p.N1338Tfs*7	ENST00000374080		1337	gAa/ga																																																																															
MED12	9968	MSKCC	GRCh37	X	70360589	70360597	+	inframe_deletion	In_Frame_Del	DEL	AGCAGCAGC	AGCAGCAGC	-			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	83	511	0	ENST00000374080.3:c.6159_6167del	p.Gln2074_Gln2076del	p.Q2074_Q2076del	ENST00000374080		2050	gAGCAGCAGCag/gag																																																																															
ATRX	546	MSKCC	GRCh37	X	76939674	76939674	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	117	741	0	ENST00000373344.5:c.1074delA	p.Lys358AsnfsTer2	p.K358Nfs*2	ENST00000373344	NM_000489.3	358	aaA/aa																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152864462	152864462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	15	127	0	ENST00000406277.2:c.64G>A	p.Ala22Thr	p.A22T	ENST00000406277	NM_152274.4	22	Gcc/Acc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993832	72993832	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	77	305	2	ENST00000268489.5:c.213del	p.Ser72ProfsTer37	p.S72Pfs*37	ENST00000268489	NM_006885.3	71	ccC/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0016183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	433	796	1	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0016184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	62	555	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14380331	14380338	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGACTT	GCCGACTT	-			P-0016184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	56	276	0	ENST00000256196.4:c.79_86del	p.Lys27AlafsTer15	p.K27Afs*15	ENST00000256196		27	AAGTCGGCg/g																																																																															
EGFR	1956	MSKCC	GRCh37	7	55266500	55266500	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	148	592	0	ENST00000275493.2:c.2792A>G	p.Glu931Gly	p.E931G	ENST00000275493	NM_005228.3	931	gAa/gGa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610208	10610208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	164	657	0	ENST00000171111.5:c.502G>T	p.Val168Phe	p.V168F	ENST00000171111	NM_203500.1	168	Gtc/Ttc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428629	49428629	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	210	723	3	ENST00000301067.7:c.10321C>T	p.Gln3441Ter	p.Q3441*	ENST00000301067	NM_003482.3	3441	Cag/Tag																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805885	46805885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	105	382	0	ENST00000290295.7:c.71G>T	p.Gly24Val	p.G24V	ENST00000290295	NM_006361.5	24	gGg/gTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207078	1207083	+	inframe_deletion	In_Frame_Del	DEL	GGGGAA	GGGGAA	-			P-0016185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	149	673	0	ENST00000326873.7:c.168_173del	p.Glu57_Gly58del	p.E57_G58del	ENST00000326873	NM_000455.4	56	GGGGAA/-																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141395	11141452	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGCCCGTCAGGAACCACGAAGGCGGAGGACCGGGGCATGCTGCTGAAAACCTTCAAC	GTGCCCGTCAGGAACCACGAAGGCGGAGGACCGGGGCATGCTGCTGAAAACCTTCAAC	-			P-0016185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	60	454	1	ENST00000344626.4:c.3383-10_3430del		p.X1128_splice	ENST00000344626	NM_003072.3	1128																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36223212	36223212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	138	873	1	ENST00000222270.7:c.5762C>T	p.Pro1921Leu	p.P1921L	ENST00000222270	NM_014727.1	1921	cCc/cTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528635	89528635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	79	355	0	ENST00000336596.2:c.2935G>T	p.Gly979Cys	p.G979C	ENST00000336596	NM_005233.5	979	Ggc/Tgc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619391	1619391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	48	605	1	ENST00000344749.5:c.1250C>T	p.Thr417Met	p.T417M	ENST00000344749	NM_001136139.2	417	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579427	7579427	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	58	593	0	ENST00000269305.4:c.260del	p.Pro87GlnfsTer36	p.P87Qfs*36	ENST00000269305	NM_001126112.2	87	cCa/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0016192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	385	635	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012383	176012386	+	frameshift_variant	Frame_Shift_Del	DEL	CCAA	CCAA	-			P-0016192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	312	684	2	ENST00000367669.3:c.1548_1551del	p.Cys516Ter	p.C516*	ENST00000367669	NM_022457.5	516	tgTTGG/tg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	119	491	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870920	12870965	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAGACATGGAAGAGGCGAGCCAGCGCAAGTGGAATTTCGATTTT	CAGAGACATGGAAGAGGCGAGCCAGCGCAAGTGGAATTTCGATTTT	-			P-0016198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	30	319	0	ENST00000228872.4:c.151_196del	p.Asp51IlefsTer5	p.D51Ifs*5	ENST00000228872	NM_004064.3	49	tgCAGAGACATGGAAGAGGCGAGCCAGCGCAAGTGGAATTTCGATTTT/tg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183308	56183308	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	181	462	0	ENST00000399503.3:c.4220del	p.Gly1407AspfsTer15	p.G1407Dfs*15	ENST00000399503	NM_005921.1	1406	caG/ca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151896545	151896545	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0016198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	95	345	0	ENST00000262189.6:c.4093-1G>T		p.X1365_splice	ENST00000262189	NM_170606.2	1365																																																																																
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0016199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1616	172	580	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0016199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1242	788	790	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
ATM	472	MSKCC	GRCh37	11	108122706	108122706	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	1044	682	1	ENST00000278616.4:c.1750C>T	p.Gln584Ter	p.Q584*	ENST00000278616	NM_000051.3	584	Cag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42041888	42041888	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	401	591	1	ENST00000219905.7:c.6086del	p.Gly2029ValfsTer73	p.G2029Vfs*73	ENST00000219905	NM_001164273.1	2028	aGg/ag																																																																															
APC	324	MSKCC	GRCh37	5	112174029	112174029	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	147	482	0	ENST00000257430.4:c.2738A>G	p.His913Arg	p.H913R	ENST00000257430	NM_000038.5	913	cAt/cGt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946352	2946353	+	missense_variant	Missense_Mutation	DNP	CT	CT	TA			P-0016199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1675	200	764	0	ENST00000396946.4:c.3384_3385delinsTA	p.Glu1129Lys	p.E1129K	ENST00000396946	NM_032415.4	1128	gtAGag/gtTAag																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38277253	38277253	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	146	571	2	ENST00000425967.3:c.1175C>T	p.Ala392Val	p.A392V	ENST00000425967	NM_001174067.1	392	gCc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	372	630	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ERG	2078	MSKCC	GRCh37	21	39755773	39755773	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	38	291	0	ENST00000288319.7:c.992C>G	p.Thr331Ser	p.T331S	ENST00000288319	NM_182918.3	331	aCc/aGc																																																																															
TET2	54790	MSKCC	GRCh37	4	106196294	106196294	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	138	199	0	ENST00000380013.4:c.4627A>G	p.Arg1543Gly	p.R1543G	ENST00000380013	NM_001127208.2	1543	Aga/Gga																																																																															
MED12	9968	MSKCC	GRCh37	X	70356309	70356309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	240	606	0	ENST00000374080.3:c.5204G>A	p.Arg1735His	p.R1735H	ENST00000374080		1735	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0016202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	75	247	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	169	616	0	ENST00000269571.5:c.2329G>C	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ctg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175958501	175958501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	53	501	0	ENST00000367669.3:c.1844C>T	p.Ser615Phe	p.S615F	ENST00000367669	NM_022457.5	615	tCt/tTt																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871757	12871757	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0016202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	144	261	0	ENST00000228872.4:c.476-2A>G		p.X159_splice	ENST00000228872	NM_004064.3	159																																																																																
TBX3	6926	MSKCC	GRCh37	12	115117458	115117458	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0016202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	148	297	0	ENST00000257566.3:c.718-2A>G		p.X240_splice	ENST00000257566	NM_016569.3	240																																																																																
CDH1	999	MSKCC	GRCh37	16	68844102	68844122	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTTCTCTCACGCTGTGTCATC	CTTCTCTCACGCTGTGTCATC	-			P-0016202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	110	399	1	ENST00000261769.5:c.691_711del	p.Phe231_Ser237del	p.F231_S237del	ENST00000261769	NM_004360.3	230	ctCTTCTCTCACGCTGTGTCATCc/ctc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0016204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	105	591	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ATM	472	MSKCC	GRCh37	11	108165730	108165730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	98	448	1	ENST00000278616.4:c.4853G>T	p.Arg1618Leu	p.R1618L	ENST00000278616	NM_000051.3	1618	cGa/cTa																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68878207	68878207	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	138	353	2	ENST00000487270.1:c.920G>T	p.Arg307Leu	p.R307L	ENST00000487270	NM_133509.3	307	cGg/cTg																																																																															
SRC	6714	MSKCC	GRCh37	20	36030041	36030041	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	32	630	1	ENST00000358208.4:c.1076A>G	p.Lys359Arg	p.K359R	ENST00000358208		359	aAg/aGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47035952	47035953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	133	828	0	ENST00000329236.7:c.402dup	p.Lys135GlnfsTer4	p.K135Qfs*4	ENST00000329236	NM_001204466.1	133	-/C																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0016205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	165	486	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	120	385	0	ENST00000346208.3:c.1275dupA	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																																																															
CDH1	999	MSKCC	GRCh37	16	68847399	68847399	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0016205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	35	439	0	ENST00000261769.5:c.1320+1G>C		p.X440_splice	ENST00000261769	NM_004360.3	440																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	172	588	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578464	7578476	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGCCGGGCGG	GGGTGCCGGGCGG	-	rs876659215		P-0016206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	205	678	3	ENST00000269305.4:c.454_466del	p.Pro152AlafsTer14	p.P152Afs*14	ENST00000269305	NM_001126112.2	152	CCGCCCGGCACCCgc/gc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021809	71021809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	74	272	0	ENST00000318789.4:c.1549C>T	p.Leu517Phe	p.L517F	ENST00000318789	NM_032682.5	517	Ctt/Ttt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	162	386	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573826	64573826	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	111	324	0	ENST00000337652.1:c.942del	p.Lys315ArgfsTer58	p.K315Rfs*58	ENST00000337652	NM_130803.2	314	gcC/gc																																																																															
RHEB	6009	MSKCC	GRCh37	7	151174424	151174431	+	frameshift_variant	Frame_Shift_Del	DEL	GATTGATG	GATTGATG	-			P-0016212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	153	475	0	ENST00000262187.5:c.263_270del	p.Thr88LysfsTer4	p.T88Kfs*4	ENST00000262187	NM_005614.3	88	aCATCAATC/a																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30108044	30108044	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	147	616	1	ENST00000331968.5:c.763C>T	p.Arg255Ter	p.R255*	ENST00000331968	NM_002742.2	255	Cga/Tga																																																																															
FH	2271	MSKCC	GRCh37	1	241676905	241676905	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	201	412	1	ENST00000366560.3:c.376G>A	p.Glu126Lys	p.E126K	ENST00000366560	NM_000143.3	126	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720732	89720732	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	21	163	0	ENST00000371953.3:c.883del	p.Leu295TyrfsTer12	p.L295Yfs*12	ENST00000371953	NM_000314.4	295	Cta/ta																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49442977	49442977	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	258	473	0	ENST00000301067.7:c.3931del	p.Arg1311AspfsTer19	p.R1311Dfs*19	ENST00000301067	NM_003482.3	1311	Aga/ga																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30194859	30194859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	372	523	0	ENST00000331968.5:c.286G>A	p.Gly96Arg	p.G96R	ENST00000331968	NM_002742.2	96	Gga/Aga																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33446588	33446588	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	204	530	1	ENST00000335858.7:c.45G>T	p.Glu15Asp	p.E15D	ENST00000335858	NM_133629.2	15	gaG/gaT																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45657062	45657062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	260	325	0	ENST00000407780.3:c.94G>A	p.Asp32Asn	p.D32N	ENST00000407780	NM_001283052.1	32	Gac/Aac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873549	151873549	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	260	436	0	ENST00000262189.6:c.8989C>G	p.Gln2997Glu	p.Q2997E	ENST00000262189	NM_170606.2	2997	Caa/Gaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873797	151873797	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0016214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	154	286	0	ENST00000262189.6:c.8741C>G	p.Ser2914Ter	p.S2914*	ENST00000262189	NM_170606.2	2914	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577049	7577049	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	528	569	1	ENST00000269305.4:c.889delC	p.His297ThrfsTer48	p.H297Tfs*48	ENST00000269305	NM_001126112.2	297	Cac/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	14	601	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038872	12038872	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	128	501	0	ENST00000396373.4:c.1165A>G	p.Met389Val	p.M389V	ENST00000396373	NM_001987.4	389	Atg/Gtg																																																																															
NF1	4763	MSKCC	GRCh37	17	29677233	29677233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	66	420	0	ENST00000358273.4:c.7354C>T	p.Arg2452Cys	p.R2452C	ENST00000358273	NM_001042492.2	2452	Cgc/Tgc																																																																															
PIM1	5292	MSKCC	GRCh37	6	37138389	37138389	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	52	442	0	ENST00000373509.5:c.38G>C	p.Arg13Pro	p.R13P	ENST00000373509	NM_002648.3	13	cGc/cCc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024546	31024546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	242	465	0	ENST00000375687.4:c.4031C>T	p.Ser1344Phe	p.S1344F	ENST00000375687	NM_015338.5	1344	tCc/tTc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143159048	143159048	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	127	348	0	ENST00000262992.4:c.805A>T	p.Ile269Phe	p.I269F	ENST00000262992	NM_001101669.1	269	Att/Ttt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	131	389	0	ENST00000346208.3:c.1300dup	p.His434ProfsTer73	p.H434Pfs*73	ENST00000346208		433	cac/caCc																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73047225	73047225	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	C			P-0016222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	74	455	0	ENST00000356692.5:c.35-3T>C		p.X12_splice	ENST00000356692		12																																																																																
PRDM1	639	MSKCC	GRCh37	6	106553043	106553043	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	157	857	0	ENST00000369096.4:c.1011del	p.Ser338LeufsTer40	p.S338Lfs*40	ENST00000369096	NM_001198.3	336	agC/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	242	516	1	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247351	153247351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	144	447	0	ENST00000281708.4:c.1451G>T	p.Arg484Met	p.R484M	ENST00000281708	NM_033632.3	484	aGg/aTg																																																																															
ATM	472	MSKCC	GRCh37	11	108206590	108206590	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	283	321	0	ENST00000278616.4:c.8170C>A	p.Gln2724Lys	p.Q2724K	ENST00000278616	NM_000051.3	2724	Caa/Aaa																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115280661	115280661	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	162	548	0	ENST00000438362.2:c.370C>G	p.Arg124Gly	p.R124G	ENST00000438362	NM_001242891.1	124	Cgg/Ggg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163307884	163307884	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	73	326	0	ENST00000271452.3:c.509+1G>T		p.X170_splice	ENST00000271452	NM_145697.2	170																																																																																
RRAS2	22800	MSKCC	GRCh37	11	14300905	14300905	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	30	138	1	ENST00000256196.4:c.593G>T	p.Gly198Val	p.G198V	ENST00000256196		198	gGc/gTc																																																																															
ATM	472	MSKCC	GRCh37	11	108138048	108138048	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	98	353	0	ENST00000278616.4:c.2617G>T	p.Gly873Ter	p.G873*	ENST00000278616	NM_000051.3	873	Gga/Tga																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2213964	2213964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1455	169	681	0	ENST00000326181.6:c.43G>A	p.Gly15Arg	p.G15R	ENST00000326181	NM_032271.2	15	Ggg/Agg																																																																															
NF1	4763	MSKCC	GRCh37	17	29533281	29533281	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	41	231	0	ENST00000358273.4:c.1284G>C	p.Lys428Asn	p.K428N	ENST00000358273	NM_001042492.2	428	aaG/aaC																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812308	212812308	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201678258		P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	40	340	0	ENST00000342788.4:c.268G>T	p.Ala90Ser	p.A90S	ENST00000342788	NM_005235.2	90	Gct/Tct																																																																															
PAK7	57144	MSKCC	GRCh37	20	9543672	9543672	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	103	343	0	ENST00000353224.5:c.1483-1G>T		p.X495_splice	ENST00000353224	NM_177990.2	495																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40739091	40739092	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	294	419	1	ENST00000373198.4:c.3192_3193delinsAA	p.Phe1064_His1065delinsLeuAsn	p.F1064_H1065delinsLN	ENST00000373198	NM_133170.3	1064	ttCCac/ttAAac																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133718	55133718	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	117	406	0	ENST00000257290.5:c.932-1G>T		p.X311_splice	ENST00000257290	NM_006206.4	311																																																																																
CSF1R	1436	MSKCC	GRCh37	5	149436894	149436894	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	173	484	0	ENST00000286301.3:c.2275T>A	p.Ser759Thr	p.S759T	ENST00000286301	NM_005211.3	759	Tcc/Acc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149439423	149439423	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	159	426	0	ENST00000286301.3:c.1972C>A	p.Pro658Thr	p.P658T	ENST00000286301	NM_005211.3	658	Cct/Act																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199821	138199821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	169	460	1	ENST00000237289.4:c.1239G>T	p.Lys413Asn	p.K413N	ENST00000237289	NM_001270507.1	413	aaG/aaT																																																																															
PREX2	80243	MSKCC	GRCh37	8	68984770	68984770	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	138	509	0	ENST00000288368.4:c.1534A>G	p.Met512Val	p.M512V	ENST00000288368	NM_024870.2	512	Atg/Gtg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500937	8500937	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	52	336	0	ENST00000356435.5:c.1945T>A	p.Tyr649Asn	p.Y649N	ENST00000356435		649	Tac/Aac																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911460	101911460	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	30	188	0	ENST00000374994.4:c.1387-2A>T		p.X463_splice	ENST00000374994	NM_004612.2	463																																																																																
RBM10	8241	MSKCC	GRCh37	X	47039709	47039709	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	218	731	1	ENST00000329236.7:c.926+1G>A		p.X309_splice	ENST00000329236	NM_001204466.1	309																																																																																
AMER1	139285	MSKCC	GRCh37	X	63412928	63412928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	210	757	0	ENST00000330258.3:c.239G>T	p.Gly80Val	p.G80V	ENST00000330258	NM_152424.3	80	gGt/gTt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	218	632	0	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89725045	89725046	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GG			P-0016225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	34	228	0	ENST00000371953.3:c.1029_1030insGG	p.Lys344GlyfsTer9	p.K344Gfs*9	ENST00000371953	NM_000314.4	343	gtg/gtGGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0016227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	36	525	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793340	242793340	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201540918		P-0016227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	66	794	0	ENST00000334409.5:c.737C>T	p.Thr246Met	p.T246M	ENST00000334409	NM_005018.2	246	aCg/aTg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467988	50467988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	30	436	3	ENST00000331340.3:c.1223G>A	p.Arg408His	p.R408H	ENST00000331340	NM_006060.4	408	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0016232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	544	657	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	175	517	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	74	430	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107180	27107180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	76	380	0	ENST00000324856.7:c.6791C>T	p.Ser2264Leu	p.S2264L	ENST00000324856	NM_006015.4	2264	tCa/tTa																																																																															
RB1	5925	MSKCC	GRCh37	13	48916734	48916734	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	62	272	0	ENST00000267163.4:c.265-1G>T		p.X89_splice	ENST00000267163	NM_000321.2	89																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27106024	27106024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	58	320	2	ENST00000324856.7:c.5635C>T	p.Arg1879Trp	p.R1879W	ENST00000324856	NM_006015.4	1879	Cgg/Tgg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561045	9561045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	26	229	0	ENST00000353224.5:c.737C>T	p.Ser246Phe	p.S246F	ENST00000353224	NM_177990.2	246	tCc/tTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099864	27099864	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	65	355	0	ENST00000324856.7:c.3743C>A	p.Ser1248Ter	p.S1248*	ENST00000324856	NM_006015.4	1248	tCa/tAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106676	27106676	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	80	421	0	ENST00000324856.7:c.6287C>G	p.Ser2096Ter	p.S2096*	ENST00000324856	NM_006015.4	2096	tCa/tGa																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288518	21288518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	113	348	0	ENST00000354336.3:c.763G>T	p.Ala255Ser	p.A255S	ENST00000354336	NM_005207.3	255	Gcc/Tcc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37035138	37035138	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	38	227	0	ENST00000231790.2:c.100G>C	p.Glu34Gln	p.E34Q	ENST00000231790	NM_000249.3	34	Gag/Cag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521726	89521726	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	100	359	0	ENST00000336596.2:c.2803G>T	p.Val935Leu	p.V935L	ENST00000336596	NM_005233.5	935	Gtg/Ttg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056756	180056756	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	209	497	3	ENST00000261937.6:c.756C>A	p.Cys252Ter	p.C252*	ENST00000261937	NM_182925.4	252	tgC/tgA																																																																															
AGO2	27161	MSKCC	GRCh37	8	141559297	141559297	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	97	394	0	ENST00000220592.5:c.1504G>C	p.Glu502Gln	p.E502Q	ENST00000220592	NM_012154.3	502	Gag/Cag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0016235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	211	641	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678568	88678568	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	36	260	0	ENST00000360948.2:c.968T>C	p.Phe323Ser	p.F323S	ENST00000360948	NM_001012338.2	323	tTt/tCt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81922878	81922878	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0016235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	46	322	0	ENST00000359376.3:c.867+1del		p.E289fs	ENST00000359376	NM_002661.3	289	gaG/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0016235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	137	646	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0016235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	151	557	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
ERF	2077	MSKCC	GRCh37	19	42752826	42752826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	347	683	0	ENST00000222329.4:c.1438C>T	p.Leu480Phe	p.L480F	ENST00000222329	NM_006494.2	480	Ctc/Ttc																																																																															
APC	324	MSKCC	GRCh37	5	112154869	112154870	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCA			P-0016235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	41	470	0	ENST00000257430.4:c.1142_1145dup	p.Arg382SerfsTer16	p.R382Sfs*16	ENST00000257430	NM_000038.5	380	-/GCCA																																																																															
APC	324	MSKCC	GRCh37	5	112174268	112174277	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTTTTGCA	AAGTTTTGCA	-			P-0016235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	170	369	0	ENST00000257430.4:c.2977_2986del	p.Lys993ValfsTer9	p.K993Vfs*9	ENST00000257430	NM_000038.5	993	AAGTTTTGCAgt/gt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	44	421	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202230	138202230	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	69	418	0	ENST00000237289.4:c.2147G>C	p.Cys716Ser	p.C716S	ENST00000237289	NM_001270507.1	716	tGc/tCc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942756	44942757	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0016235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	178	299	0	ENST00000377967.4:c.3336_3337insAA	p.Val1113LysfsTer8	p.V1113Kfs*8	ENST00000377967	NM_021140.2	1112	-/AA																																																																															
TP53	7157	MSKCC	GRCh37	17	7579433	7579433	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1064793279		P-0016236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	94	465	1	ENST00000269305.4:c.254del	p.Pro85LeufsTer38	p.P85Lfs*38	ENST00000269305	NM_001126112.2	85	cCt/ct																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40354806	40354806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	125	539	0	ENST00000293328.3:c.2098G>A	p.Val700Met	p.V700M	ENST00000293328	NM_012448.3	700	Gtg/Atg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0016239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	192	414	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097836	8097836	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	158	457	0	ENST00000346208.3:c.218A>T	p.Gln73Leu	p.Q73L	ENST00000346208		73	cAg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	711	659	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371734	55371734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	139	456	1	ENST00000297316.4:c.424C>T	p.Arg142Cys	p.R142C	ENST00000297316	NM_022454.3	142	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579344	7579345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	423	637	0	ENST00000269305.4:c.342dup	p.His115AlafsTer34	p.H115Afs*34	ENST00000269305	NM_001126112.2	114	-/G																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437556	56437556	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	398	628	0	ENST00000407977.2:c.906G>A	p.Trp302Ter	p.W302*	ENST00000407977		302	tgG/tgA																																																																															
ATR	545	MSKCC	GRCh37	3	142268418	142268418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	318	520	0	ENST00000350721.4:c.3074G>A	p.Arg1025His	p.R1025H	ENST00000350721	NM_001184.3	1025	cGt/cAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971077	21971077	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	250	365	0	ENST00000304494.5:c.281T>A	p.Leu94Gln	p.L94Q	ENST00000304494	NM_000077.4	94	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574006	7574013	+	frameshift_variant	Frame_Shift_Del	DEL	ACATCTCG	ACATCTCG	-			P-0016246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	474	481	0	ENST00000269305.4:c.1014_1021del	p.Glu339ProfsTer5	p.E339Pfs*5	ENST00000269305	NM_001126112.2	338	ttCGAGATGTtc/tttc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033252	69033252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	405	387	1	ENST00000288368.4:c.3692C>A	p.Thr1231Asn	p.T1231N	ENST00000288368	NM_024870.2	1231	aCt/aAt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11259440	11259440	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	39	302	0	ENST00000361445.4:c.4128T>A	p.Asp1376Glu	p.D1376E	ENST00000361445	NM_004958.3	1376	gaT/gaA																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626974	14626974	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	73	489	0	ENST00000254322.2:c.801T>A	p.Cys267Ter	p.C267*	ENST00000254322	NM_006145.1	267	tgT/tgA																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0016250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	70	417	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	81	534	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0016250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	79	526	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743501	46743503	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0016250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	28	310	0	ENST00000371975.4:c.1885_1887del	p.Glu629del	p.E629del	ENST00000371975	NM_003579.3	628	GAG/-																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518305	204518305	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	48	445	0	ENST00000367182.3:c.968G>T	p.Cys323Phe	p.C323F	ENST00000367182	NM_001278516.1	323	tGt/tTt																																																																															
KIT	3815	MSKCC	GRCh37	4	55594086	55594086	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	52	315	0	ENST00000288135.5:c.1872G>T	p.Met624Ile	p.M624I	ENST00000288135	NM_000222.2	624	atG/atT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356130	66356130	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	91	390	0	ENST00000273854.3:c.1367A>T	p.Gln456Leu	p.Q456L	ENST00000273854	NM_004439.5	456	cAg/cTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70356445	70356446	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0016250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	80	654	1	ENST00000374080.3:c.5340_5341delinsTT	p.Glu1780_Glu1781delinsAspTer	p.E1780_E1781delinsD*	ENST00000374080		1780	gaGGaa/gaTTaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	13	957	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444766	49444767	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	29	1304	1	ENST00000301067.7:c.2699dup	p.Ser901ValfsTer2	p.S901Vfs*2	ENST00000301067	NM_003482.3	900	ctg/ctTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0016259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	182	681	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat																																																																															
INSR	3643	MSKCC	GRCh37	19	7119529	7119529	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	107	703	0	ENST00000302850.5:c.3725A>C	p.Asn1242Thr	p.N1242T	ENST00000302850	NM_000208.2	1242	aAt/aCt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144092	11144092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	108	808	0	ENST00000344626.4:c.3673G>A	p.Asp1225Asn	p.D1225N	ENST00000344626	NM_003072.3	1225	Gac/Aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0016260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	185	926	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	93	947	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220443	1220443	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	76	967	0	ENST00000326873.7:c.536C>G	p.Pro179Arg	p.P179R	ENST00000326873	NM_000455.4	179	cCg/cGg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679765	88679765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	34	784	1	ENST00000360948.2:c.698G>A	p.Gly233Asp	p.G233D	ENST00000360948	NM_001012338.2	233	gGc/gAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18443829	18443829	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	49	632	0	ENST00000266497.5:c.802T>A	p.Ser268Thr	p.S268T	ENST00000266497		268	Tct/Act																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356278	66356278	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	35	773	0	ENST00000273854.3:c.1219G>C	p.Glu407Gln	p.E407Q	ENST00000273854	NM_004439.5	407	Gag/Cag																																																																															
ATRX	546	MSKCC	GRCh37	X	76889081	76889081	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	74	887	0	ENST00000373344.5:c.4929G>T	p.Glu1643Asp	p.E1643D	ENST00000373344	NM_000489.3	1643	gaG/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0016262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	8	1042	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115970	8116001	+	coding_sequence_variant,3_prime_UTR_variant	Frame_Shift_Del	DEL	TCACCGCCATGGGTTAGAGCCCTGCTCGATGC	TCACCGCCATGGGTTAGAGCCCTGCTCGATGC	-			P-0016262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	32	548	0	ENST00000346208.3:c.1320_*19delCGCCATGGGTTAGAGCCCTGCTCGATGCTCAC		p.*440fs*	ENST00000346208		439																																																																																
TBX3	6926	MSKCC	GRCh37	12	115117308	115117309	+	splice_donor_variant	Splice_Site	INS	-	-	C			P-0016264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	37	537	0	ENST00000257566.3:c.864+1dup		p.X288_splice	ENST00000257566	NM_016569.3	288																																																																																
CDH1	999	MSKCC	GRCh37	16	68849464	68849483	+	splice_donor_variant,non_coding_transcript_exon_variant,intron_variant	Splice_Site	DEL	TGACGAATGTGGTACCTTTT	TGACGAATGTGGTACCTTTT	-			P-0016264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	94	894	0	ENST00000563916.1:n.343_347+15del		p.X115_splice	ENST00000563916		115																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56177812	56177813	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0016264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	123	559	1	ENST00000399503.3:c.2789_2790del	p.Arg930ThrfsTer10	p.R930Tfs*10	ENST00000399503	NM_005921.1	929	GAg/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	323	1085	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0016266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	124	467	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0016266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	468	1049	1	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518424	204518424	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	401	756	1	ENST00000367182.3:c.1087C>T	p.Arg363Ter	p.R363*	ENST00000367182	NM_001278516.1	363	Cga/Tga																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849819	156849819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	173	721	0	ENST00000524377.1:c.2075G>A	p.Arg692His	p.R692H	ENST00000524377	NM_002529.3	692	cGc/cAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118390695	118390695	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	156	612	0	ENST00000534358.1:c.11345A>G	p.Asn3782Ser	p.N3782S	ENST00000534358	NM_005933.3	3782	aAc/aGc																																																																															
APC	324	MSKCC	GRCh37	5	112175346	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAAT	TTGAAT	A			P-0016266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	94	480	0	ENST00000257430.4:c.4055_4060delinsA	p.Val1352AspfsTer21	p.V1352Dfs*21	ENST00000257430	NM_000038.5	1352	gTTGAATtt/gAtt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	137	909	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0016267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	89	675	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552822		P-0016267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	104	601	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579462	7579463	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0016267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	100	852	0	ENST00000269305.4:c.224dup	p.Ala76CysfsTer73	p.A76Cfs*73	ENST00000269305	NM_001126112.2	75	cct/ccCt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87338487	87338487	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0016267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	63	519	0	ENST00000277120.3:c.584-1G>A		p.X195_splice	ENST00000277120		195																																																																																
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0016268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	87	544	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0016268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	84	644	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691929	30691929	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	31	345	0	ENST00000359013.4:c.506A>G	p.Asn169Ser	p.N169S	ENST00000359013	NM_001024847.2	169	aAt/aGt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300900	137300900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148741267		P-0016268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	89	616	0	ENST00000481739.1:c.545G>A	p.Arg182Gln	p.R182Q	ENST00000481739	NM_002957.4	182	cGg/cAg																																																																															
POLE	5426	MSKCC	GRCh37	12	133218912	133218912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	23	662	4	ENST00000320574.5:c.5024G>A	p.Arg1675His	p.R1675H	ENST00000320574	NM_006231.2	1675	cGc/cAc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152420011	152420011	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	13	484	1	ENST00000206249.3:c.1698C>A	p.Ser566Arg	p.S566R	ENST00000206249	NM_000125.3	566	agC/agA																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132464	11132468	+	stop_gained	Nonsense_Mutation	ONP	ACGCA	ACGCA	TAGCT			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	27	625	1	ENST00000344626.4:c.2680_2684delinsTAGCT	p.Thr894_Gln895delinsTer	p.T894_Q895delins*	ENST00000344626	NM_003072.3	894	ACGCAg/TAGCTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948719	71948719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	119	504	1	ENST00000298229.2:c.3431C>A	p.Ala1144Glu	p.A1144E	ENST00000298229	NM_001567.3	1144	gCg/gAg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805055	89805055	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	10	552	0	ENST00000389301.3:c.4322A>G	p.Gln1441Arg	p.Q1441R	ENST00000389301	NM_000135.2	1441	cAg/cGg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805065	89805065	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	12	519	1	ENST00000389301.3:c.4312A>T	p.Ser1438Cys	p.S1438C	ENST00000389301	NM_000135.2	1438	Agc/Tgc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866648	37866648	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	16	596	0	ENST00000269571.5:c.815T>G	p.Val272Gly	p.V272G	ENST00000269571		272	gTc/gGc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302813	15302814	+	missense_variant	Missense_Mutation	DNP	TG	TG	CA			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	19	596	0	ENST00000263388.2:c.636_637inv	p.Arg213Gly	p.R213G	ENST00000263388	NM_000435.2	212	tgCAgg/tgTGgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730828	40730828	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	15	658	0	ENST00000373198.4:c.3707G>C	p.Cys1236Ser	p.C1236S	ENST00000373198	NM_133170.3	1236	tGc/tCc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515621	31515621	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	11	581	0	ENST00000344624.3:c.998T>C	p.Leu333Ser	p.L333S	ENST00000344624		333	tTa/tCa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741761	145741761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	89	519	0	ENST00000428558.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000428558	NM_004260.3	248	Cgt/Tgt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38287313	38287313	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	13	620	0	ENST00000425967.3:c.344C>G	p.Thr115Arg	p.T115R	ENST00000425967	NM_001174067.1	115	aCa/aGa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876522	35876523	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	10	568	0	ENST00000303115.3:c.1315_1316dup	p.Ser440LeufsTer24	p.S440Lfs*24	ENST00000303115	NM_002185.3	438	-/AC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	172	684	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
RHEB	6009	MSKCC	GRCh37	7	151181846	151181846	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	128	417	0	ENST00000262187.5:c.169C>T	p.Gln57Ter	p.Q57*	ENST00000262187	NM_005614.3	57	Caa/Taa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117387	115117388	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0016270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	134	413	0	ENST00000257566.3:c.785_786dup	p.Leu263AsnfsTer20	p.L263Nfs*20	ENST00000257566	NM_016569.3	262	-/AA																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647589	23647589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	165	523	0	ENST00000261584.4:c.278G>A	p.Gly93Glu	p.G93E	ENST00000261584	NM_024675.3	93	gGa/gAa																																																																															
CDH1	999	MSKCC	GRCh37	16	68772259	68772260	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0016270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	202	730	0	ENST00000261769.5:c.109dup	p.Tyr37LeufsTer22	p.Y37Lfs*22	ENST00000261769	NM_004360.3	36	-/T																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096309	178096309	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	31	386	0	ENST00000397062.3:c.1022del	p.Asp341ValfsTer8	p.D341Vfs*8	ENST00000397062	NM_006164.4	341	gAt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	300	754	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398286	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0016271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	282	579	0	ENST00000256078.4:c.33_34delinsCT	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	11	gcTGgt/gcCTgt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782387	9782387	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370932461		P-0016271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	111	674	2	ENST00000377346.4:c.2320G>A	p.Val774Met	p.V774M	ENST00000377346	NM_005026.3	774	Gtg/Atg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961050	15961050	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0016271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	80	238	0	ENST00000268712.3:c.6170A>G	p.Gln2057Arg	p.Q2057R	ENST00000268712	NM_006311.3	2057	cAa/cGa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207054	1207054	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	266	618	1	ENST00000326873.7:c.142A>T	p.Lys48Ter	p.K48*	ENST00000326873	NM_000455.4	48	Aag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602253	10602254	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0016271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	171	451	0	ENST00000171111.5:c.1324_1325del	p.Arg442ValfsTer2	p.R442Vfs*2	ENST00000171111	NM_203500.1	442	AGg/g																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739078	40739078	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	87	472	0	ENST00000373198.4:c.3206G>A	p.Trp1069Ter	p.W1069*	ENST00000373198	NM_133170.3	1069	tGg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112178245	112178250	+	inframe_deletion	In_Frame_Del	DEL	TAGACC	TAGACC	-			P-0016271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	79	437	0	ENST00000257430.4:c.6956_6961del	p.Arg2319_Pro2320del	p.R2319_P2320del	ENST00000257430	NM_000038.5	2318	agTAGACCt/agt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	82	438	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	20	284	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578528	7578528	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	193	881	0	ENST00000269305.4:c.402T>A	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	ttT/ttA																																																																															
PMS2	5395	MSKCC	GRCh37	7	6035190	6035190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	209	486	0	ENST00000265849.7:c.878A>G	p.Asn293Ser	p.N293S	ENST00000265849	NM_000535.5	293	aAc/aGc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267359	198267359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	20	908	0	ENST00000335508.6:c.1998G>T	p.Lys666Asn	p.K666N	ENST00000335508	NM_012433.2	666	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	542	981	3	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																															
PGR	5241	MSKCC	GRCh37	11	100998886	100998886	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	325	966	0	ENST00000325455.5:c.916G>C	p.Val306Leu	p.V306L	ENST00000325455	NM_001202474.3	306	Gtg/Ctg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21629878	21629878	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	122	1049	0	ENST00000421138.2:c.916A>C	p.Lys306Gln	p.K306Q	ENST00000421138		306	Aag/Cag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829989	72829990	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0016288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	301	869	0	ENST00000268489.5:c.6591_6592delCT	p.Phe2198GlnfsTer6	p.F2198Qfs*6	ENST00000268489	NM_006885.3	2197	ctCTtc/cttc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993196	72993196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	416	1330	2	ENST00000268489.5:c.849G>T	p.Met283Ile	p.M283I	ENST00000268489	NM_006885.3	283	atG/atT																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993399	72993399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	339	1003	0	ENST00000268489.5:c.646C>T	p.Pro216Ser	p.P216S	ENST00000268489	NM_006885.3	216	Ccg/Tcg																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045687	26045687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	87	277	0	ENST00000540144.1:c.49C>A	p.Pro17Thr	p.P17T	ENST00000540144	NM_003531.2	17	Ccg/Acg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0016290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	466	1029	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0016290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	1348	1232	1	ENST00000256078.4:c.34_35delinsAT	p.Gly12Ile	p.G12I	ENST00000256078	NM_033360.2	12	GGt/ATt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602583	10602584	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0016290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	255	1027	1	ENST00000171111.5:c.994_995delinsAT	p.Gly332Ile	p.G332I	ENST00000171111	NM_203500.1	332	GGc/ATc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212293132	212293132	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	132	830	1	ENST00000342788.4:c.2719+1G>T		p.X907_splice	ENST00000342788	NM_005235.2	907																																																																																
IRS1	3667	MSKCC	GRCh37	2	227662985	227662985	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	361	1015	0	ENST00000305123.5:c.470G>T	p.Gly157Val	p.G157V	ENST00000305123	NM_005544.2	157	gGa/gTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187560926	187560926	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	110	872	0	ENST00000441802.2:c.3592A>G	p.Thr1198Ala	p.T1198A	ENST00000441802	NM_005245.3	1198	Act/Gct																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638003	176638003	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	203	1410	0	ENST00000439151.2:c.2603C>G	p.Ser868Cys	p.S868C	ENST00000439151	NM_022455.4	868	tCt/tGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974669	21974669	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0016290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	152	974	0	ENST00000304494.5:c.150+8G>C		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																																
RBM10	8241	MSKCC	GRCh37	X	47045431	47045474	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCCAACATTCACATACACATACAAACTTTCAGCAAATGAAGTA	CCCCAACATTCACATACACATACAAACTTTCAGCAAATGAAGTA	-			P-0016290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	104	732	0	ENST00000329236.7:c.2197-31_2209del		p.X733_splice	ENST00000329236	NM_001204466.1	733																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	52	1120	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0016292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	17	611	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0016293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	373	754	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0016293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	254	362	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	136	472	1	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022592	31022592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1597	395	912	0	ENST00000375687.4:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000375687	NM_015338.5	693	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100980	41100980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	218	602	0	ENST00000373198.4:c.1376G>A	p.Arg459Gln	p.R459Q	ENST00000373198	NM_133170.3	459	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	167	820	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244020	5244020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	532	797	2	ENST00000357368.4:c.1462G>A	p.Val488Met	p.V488M	ENST00000357368	NM_002850.3	488	Gtg/Atg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092759	27092759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	214	745	0	ENST00000324856.7:c.2780G>A	p.Gly927Glu	p.G927E	ENST00000324856	NM_006015.4	927	gGa/gAa																																																																															
RET	5979	MSKCC	GRCh37	10	43604646	43604646	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	175	740	0	ENST00000355710.3:c.1231T>C	p.Ser411Pro	p.S411P	ENST00000355710	NM_020975.4	411	Tcc/Ccc																																																																															
RET	5979	MSKCC	GRCh37	10	43609029	43609029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	256	681	1	ENST00000355710.3:c.1785G>T	p.Glu595Asp	p.E595D	ENST00000355710	NM_020975.4	595	gaG/gaT																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779359	3779359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	291	573	0	ENST00000262367.5:c.5689C>T	p.Pro1897Ser	p.P1897S	ENST00000262367	NM_004380.2	1897	Ccc/Tcc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866732	37866732	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0016293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	241	780	0	ENST00000269571.5:c.899C>G	p.Pro300Arg	p.P300R	ENST00000269571		300	cCc/cGc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625353	69625353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	198	1013	0	ENST00000334134.2:c.440C>T	p.Pro147Leu	p.P147L	ENST00000334134	NM_005247.2	147	cCc/cTc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943788	71943788	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771815535		P-0016295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	57	1033	0	ENST00000298229.2:c.1831C>T	p.Arg611Cys	p.R611C	ENST00000298229	NM_001567.3	611	Cgc/Tgc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	168	720	0	ENST00000347630.2:c.392G>C	p.Trp131Ser	p.W131S	ENST00000347630	NM_001007230.1	131	tGg/tCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1391	1216	742	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	176	612	3	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743924	40743924	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199514226		P-0016308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	141	602	1	ENST00000373198.4:c.3071C>T	p.Thr1024Met	p.T1024M	ENST00000373198	NM_133170.3	1024	aCg/aTg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0016308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	112	672	1	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843736	156843736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1669	132	955	2	ENST00000524377.1:c.1162G>A	p.Glu388Lys	p.E388K	ENST00000524377	NM_002529.3	388	Gag/Aag																																																																															
NF1	4763	MSKCC	GRCh37	17	29546044	29546044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1490	198	734	0	ENST00000358273.4:c.1549G>A	p.Glu517Lys	p.E517K	ENST00000358273	NM_001042492.2	517	Gaa/Aaa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65332894	65332894	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0016308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	28	238	0	ENST00000342505.4:c.648-3T>C		p.X216_splice	ENST00000342505	NM_002227.2	216																																																																																
KDM5A	5927	MSKCC	GRCh37	12	475152	475152	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1421	364	1010	0	ENST00000399788.2:c.485A>G	p.Tyr162Cys	p.Y162C	ENST00000399788	NM_001042603.1	162	tAt/tGt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285231	212285231	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	141	615	0	ENST00000342788.4:c.3070del	p.Val1024SerfsTer128	p.V1024Sfs*128	ENST00000342788	NM_005235.2	1024	Gtc/tc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739099	40739099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	71	524	0	ENST00000373198.4:c.3185G>C	p.Arg1062Pro	p.R1062P	ENST00000373198	NM_133170.3	1062	cGc/cCc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35857082	35857082	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0016308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	98	339	0	ENST00000303115.3:c.3G>T	p.Met1?	p.M1?	ENST00000303115	NM_002185.3	1	atG/atT																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672330	86672330	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1256	188	578	1	ENST00000274376.6:c.2132G>T	p.Arg711Leu	p.R711L	ENST00000274376	NM_002890.2	711	cGa/cTa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152201826	152201826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	166	589	0	ENST00000206249.3:c.680G>A	p.Cys227Tyr	p.C227Y	ENST00000206249	NM_000125.3	227	tGc/tAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140501252	140501252	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1392	221	697	0	ENST00000288602.6:c.820A>G	p.Thr274Ala	p.T274A	ENST00000288602	NM_004333.4	274	Aca/Gca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891537	151891537	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	207	455	0	ENST00000262189.6:c.4495A>G	p.Met1499Val	p.M1499V	ENST00000262189	NM_170606.2	1499	Atg/Gtg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039695	47039695	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1268	223	907	0	ENST00000329236.7:c.913A>T	p.Lys305Ter	p.K305*	ENST00000329236	NM_001204466.1	305	Aag/Tag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410964	63410964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1222	151	742	1	ENST00000330258.3:c.2203G>T	p.Ala735Ser	p.A735S	ENST00000330258	NM_152424.3	735	Gca/Tca																																																																															
ATRX	546	MSKCC	GRCh37	X	76972626	76972626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1507	86	698	0	ENST00000373344.5:c.115G>A	p.Ala39Thr	p.A39T	ENST00000373344	NM_000489.3	39	Gca/Aca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0016309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	190	738	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591895	48591895	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	28	510	0	ENST00000342988.3:c.1058A>G	p.Tyr353Cys	p.Y353C	ENST00000342988	NM_005359.5	353	tAc/tGc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11301665	11301665	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	55	622	0	ENST00000361445.4:c.1486G>C	p.Gly496Arg	p.G496R	ENST00000361445	NM_004958.3	496	Ggc/Cgc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111884632	111884632	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	63	563	0	ENST00000341259.2:c.808G>C	p.Asp270His	p.D270H	ENST00000341259	NM_005475.2	270	Gac/Cac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144110	11144110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	58	788	2	ENST00000344626.4:c.3691G>A	p.Ala1231Thr	p.A1231T	ENST00000344626	NM_003072.3	1231	Gcc/Acc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94906474	94906474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	46	457	0	ENST00000536441.1:c.1424G>A	p.Arg475Gln	p.R475Q	ENST00000536441	NM_144665.3	475	cGa/cAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420670	49420670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	31	491	1	ENST00000301067.7:c.15079C>T	p.Arg5027Ter	p.R5027*	ENST00000301067	NM_003482.3	5027	Cga/Tga																																																																															
CTCF	10664	MSKCC	GRCh37	16	67663388	67663388	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	267	370	0	ENST00000264010.4:c.1789G>T	p.Gly597Ter	p.G597*	ENST00000264010	NM_006565.3	597	Gga/Tga																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665562	138665562	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0016325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	175	280	0	ENST00000330315.3:c.3G>A	p.Met1?	p.M1?	ENST00000330315	NM_023067.3	1	atG/atA																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564534	86564534	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	37	256	0	ENST00000274376.6:c.266G>C	p.Gly89Ala	p.G89A	ENST00000274376	NM_002890.2	89	gGa/gCa																																																																															
MYC	4609	MSKCC	GRCh37	8	128750975	128750975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	40	230	2	ENST00000377970.2:c.512G>T	p.Arg171Leu	p.R171L	ENST00000377970	NM_002467.4	171	cGc/cTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0016335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	133	369	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
CDH1	999	MSKCC	GRCh37	16	68771319	68771319	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0016335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	49	152	0	ENST00000261769.5:c.1A>G	p.Met1?	p.M1?	ENST00000261769	NM_004360.3	1	Atg/Gtg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16021255	16021259	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	TAAAA	TAAAA	-			P-0016335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	98	262	0	ENST00000268712.3:c.1998_2002delTTTTA	p.Tyr666Ter	p.Y666*	ENST00000268712	NM_006311.3	666	taTTTTAac/taac																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0016337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	135	661	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720828	89720828	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	96	298	0	ENST00000371953.3:c.979A>T	p.Lys327Ter	p.K327*	ENST00000371953	NM_000314.4	327	Aaa/Taa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589656	67589670	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCCCAGGTGAGTTT	ATCCCAGGTGAGTTT	-			P-0016337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	89	412	0	ENST00000274335.5:c.1419_1425+8delATCCCAGGTGAGTTT		p.X473_splice	ENST00000274335		473																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151882717	151882717	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0016337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	25	247	0	ENST00000262189.6:c.5009-1G>A		p.X1670_splice	ENST00000262189	NM_170606.2	1670																																																																																
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0016338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	229	450	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	451	658	0	ENST00000269305.4:c.857A>T	p.Glu286Val	p.E286V	ENST00000269305	NM_001126112.2	286	gAa/gTa																																																																															
APC	324	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398123121		P-0016338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	229	340	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727429	66727429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	283	399	1	ENST00000307102.5:c.145C>T	p.Arg49Cys	p.R49C	ENST00000307102	NM_002755.3	49	Cgc/Tgc																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006090	22006090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	272	417	1	ENST00000276925.6:c.313C>T	p.Arg105Trp	p.R105W	ENST00000276925	NM_004936.3	105	Cgg/Tgg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047957	180047957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	97	459	1	ENST00000261937.6:c.2218G>A	p.Glu740Lys	p.E740K	ENST00000261937	NM_182925.4	740	Gag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061223	38061228	+	inframe_deletion	In_Frame_Del	DEL	TCTCGA	TCTCGA	-			P-0016342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	174	402	0	ENST00000250448.2:c.761_766del	p.Phe254_Asn256delinsTyr	p.F254_N256delinsY	ENST00000250448	NM_004496.3	254	tTCGAGAac/tac																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50483668	50483668	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0016342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	94	201	0	ENST00000394963.4:c.774del	p.Trp258CysfsTer15	p.W258Cfs*15	ENST00000394963	NM_003076.4	258	tGg/tg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176694649	176694657	+	frameshift_variant	Frame_Shift_Del	DEL	TGCAATGAC	TGCAATGAC	GCAATGA			P-0016342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	174	479	2	ENST00000439151.2:c.5233_5241delinsGCAATGA	p.Cys1745AlafsTer4	p.C1745Afs*4	ENST00000439151	NM_022455.4	1745	TGCAATGAC/GCAATGA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	453	401	0	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274018	10274018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	193	588	0	ENST00000330684.3:c.251C>T	p.Thr84Met	p.T84M	ENST00000330684	NM_001134407.1	84	aCg/aTg																																																																															
CDC42	998	MSKCC	GRCh37	1	22413312	22413312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	89	162	0	ENST00000344548.3:c.439C>T	p.Arg147Cys	p.R147C	ENST00000344548	NM_001039802.1	147	Cgt/Tgt																																																																															
WT1	7490	MSKCC	GRCh37	11	32456341	32456341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	212	586	0	ENST00000332351.3:c.551C>T	p.Pro184Leu	p.P184L	ENST00000332351	NM_024426.4	184	cCg/cTg																																																																															
RB1	5925	MSKCC	GRCh37	13	49033834	49033934	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCTATCTCCGGCTAAATACACTTTGTGAACGCCTTCTGTCTGAGCACCCAGAATTAGAACATATCATCTGGACCCTTTTCCAGCACACCCTGCAGAATG	AGCCTATCTCCGGCTAAATACACTTTGTGAACGCCTTCTGTCTGAGCACCCAGAATTAGAACATATCATCTGGACCCTTTTCCAGCACACCCTGCAGAATG	-			P-0016345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	261	359	0	ENST00000267163.4:c.1973_2073delCCTATCTCCGGCTAAATACACTTTGTGAACGCCTTCTGTCTGAGCACCCAGAATTAGAACATATCATCTGGACCCTTTTCCAGCACACCCTGCAGAATGAG	p.Ala658ValfsTer2	p.A658Vfs*2	ENST00000267163	NM_000321.2	657	ctAGCCTATCTCCGGCTAAATACACTTTGTGAACGCCTTCTGTCTGAGCACCCAGAATTAGAACATATCATCTGGACCCTTTTCCAGCACACCCTGCAGAATGag/ctag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469088	25469093	+	inframe_deletion	In_Frame_Del	DEL	GGCTTT	GGCTTT	-			P-0016345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	252	513	0	ENST00000264709.3:c.1365_1370delAAAGCC	p.Lys455_Pro457delinsAsn	p.K455_P457delinsN	ENST00000264709	NM_175629.2	455	aaAAAGCCc/aac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251578	212251578	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	324	318	0	ENST00000342788.4:c.3481G>A	p.Glu1161Lys	p.E1161K	ENST00000342788	NM_005235.2	1161	Gaa/Aaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467559	66467559	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	196	389	0	ENST00000273854.3:c.710T>C	p.Val237Ala	p.V237A	ENST00000273854	NM_004439.5	237	gTa/gCa																																																																															
RXRA	6256	MSKCC	GRCh37	9	137328347	137328347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	279	590	1	ENST00000481739.1:c.1276C>T	p.Arg426Cys	p.R426C	ENST00000481739	NM_002957.4	426	Cgc/Tgc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589147	67589147	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	128	465	0	ENST00000274335.5:c.1135A>G	p.Lys379Glu	p.K379E	ENST00000274335		379	Aaa/Gaa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178097266	178097266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	280	714	1	ENST00000397062.3:c.448C>T	p.His150Tyr	p.H150Y	ENST00000397062	NM_006164.4	150	Cac/Tac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720803	89720804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	51	328	0	ENST00000371953.3:c.955dup	p.Thr319AsnfsTer6	p.T319Nfs*6	ENST00000371953	NM_000314.4	318	-/A																																																																															
AGO2	27161	MSKCC	GRCh37	8	141569588	141569588	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	260	757	1	ENST00000220592.5:c.696G>T	p.Glu232Asp	p.E232D	ENST00000220592	NM_012154.3	232	gaG/gaT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0016350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	104	593	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578528	7578528	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	181	872	2	ENST00000269305.4:c.402T>A	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	ttT/ttA																																																																															
ATR	545	MSKCC	GRCh37	3	142215252	142215252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	77	549	0	ENST00000350721.4:c.5849C>T	p.Ser1950Leu	p.S1950L	ENST00000350721	NM_001184.3	1950	tCa/tTa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382150	152382150	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	74	382	0	ENST00000206249.3:c.1260del	p.Met421TrpfsTer17	p.M421Wfs*17	ENST00000206249	NM_000125.3	420	ggC/gg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151856016	151856016	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	160	798	0	ENST00000262189.6:c.11602del	p.Arg3868GlyfsTer21	p.R3868Gfs*21	ENST00000262189	NM_170606.2	3868	Agg/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	335	501	1	ENST00000269305.4:c.712T>C	p.Cys238Arg	p.C238R	ENST00000269305	NM_001126112.2	238	Tgt/Cgt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589580	67589606	+	inframe_deletion	In_Frame_Del	DEL	AATTACATGAATATAACACTCAGTTTC	AATTACATGAATATAACACTCAGTTTC	-			P-0016364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	324	434	0	ENST00000274335.5:c.1345_1371delTTACATGAATATAACACTCAGTTTCAA	p.Leu449_Gln457del	p.L449_Q457del	ENST00000274335		448	aAATTACATGAATATAACACTCAGTTTCaa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	764	628	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	366	483	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	143	354	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740623	58740624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs763475304		P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	711	739	2	ENST00000305921.3:c.1535dup	p.Asn512LysfsTer16	p.N512Kfs*16	ENST00000305921	NM_003620.3	510	caa/cAaa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16068427	16068427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	11	107	0	ENST00000268712.3:c.484G>T	p.Gly162Trp	p.G162W	ENST00000268712	NM_006311.3	162	Ggg/Tgg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87338624	87338624	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	157	446	1	ENST00000277120.3:c.720G>T	p.Met240Ile	p.M240I	ENST00000277120		240	atG/atT																																																																															
STK11	6794	MSKCC	GRCh37	19	1221340	1221340	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	441	488	1	ENST00000326873.7:c.862+1G>C		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11096864	11096864	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	578	789	0	ENST00000344626.4:c.356-1G>T		p.X119_splice	ENST00000344626	NM_003072.3	119																																																																																
INPP4B	8821	MSKCC	GRCh37	4	143003199	143003199	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	372	489	0	ENST00000262992.4:c.2627T>A	p.Leu876Gln	p.L876Q	ENST00000262992	NM_001101669.1	876	cTg/cAg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11189795	11189795	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	143	337	0	ENST00000361445.4:c.5714G>A	p.Arg1905Lys	p.R1905K	ENST00000361445	NM_004958.3	1905	aGa/aAa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16245421	16245421	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	115	346	0	ENST00000375759.3:c.1396G>T	p.Asp466Tyr	p.D466Y	ENST00000375759	NM_015001.2	466	Gat/Tat																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933472	36933472	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	436	571	0	ENST00000361632.4:c.1815G>T	p.Gln605His	p.Q605H	ENST00000361632		605	caG/caT																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206652423	206652424	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	198	581	0	ENST00000367120.3:c.1135dup	p.Leu379ProfsTer10	p.L379Pfs*10	ENST00000367120	NM_014002.3	377	agc/agCc																																																																															
PARP1	142	MSKCC	GRCh37	1	226551695	226551695	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	557	596	0	ENST00000366794.5:c.2735A>C	p.Gln912Pro	p.Q912P	ENST00000366794	NM_001618.3	912	cAg/cCg																																																																															
PARP1	142	MSKCC	GRCh37	1	226552753	226552753	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	460	451	0	ENST00000366794.5:c.2608G>C	p.Ala870Pro	p.A870P	ENST00000366794	NM_001618.3	870	Gct/Cct																																																																															
TET1	80312	MSKCC	GRCh37	10	70332609	70332609	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	280	638	1	ENST00000373644.4:c.514C>A	p.Leu172Ile	p.L172I	ENST00000373644	NM_030625.2	172	Cta/Ata																																																																															
TET1	80312	MSKCC	GRCh37	10	70405200	70405200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	442	684	0	ENST00000373644.4:c.2714C>T	p.Ser905Leu	p.S905L	ENST00000373644	NM_030625.2	905	tCa/tTa																																																																															
TET1	80312	MSKCC	GRCh37	10	70450967	70450967	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	239	622	0	ENST00000373644.4:c.5807C>G	p.Pro1936Arg	p.P1936R	ENST00000373644	NM_030625.2	1936	cCt/cGt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633552	69633552	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	323	291	1	ENST00000334134.2:c.150C>A	p.Cys50Ter	p.C50*	ENST00000334134	NM_005247.2	50	tgC/tgA																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948306	71948306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	610	794	0	ENST00000298229.2:c.3018G>T	p.Arg1006Ser	p.R1006S	ENST00000298229	NM_001567.3	1006	agG/agT																																																																															
EED	8726	MSKCC	GRCh37	11	85956305	85956305	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	109	251	0	ENST00000263360.6:c.34G>T	p.Gly12Ter	p.G12*	ENST00000263360	NM_003797.3	12	Gga/Tga																																																																															
PGR	5241	MSKCC	GRCh37	11	100998256	100998256	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	413	219	0	ENST00000325455.5:c.1546G>T	p.Gly516Cys	p.G516C	ENST00000325455	NM_001202474.3	516	Ggc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108106396	108106396	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	300	237	0	ENST00000278616.4:c.332-1G>T		p.X111_splice	ENST00000278616	NM_000051.3	111																																																																																
ATM	472	MSKCC	GRCh37	11	108190784	108190784	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	151	387	0	ENST00000278616.4:c.6451A>T	p.Arg2151Ter	p.R2151*	ENST00000278616	NM_000051.3	2151	Aga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435986	49435986	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	380	544	0	ENST00000301067.7:c.5995A>G	p.Asn1999Asp	p.N1999D	ENST00000301067	NM_003482.3	1999	Aac/Gac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112197	115112197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	313	437	0	ENST00000257566.3:c.1543G>T	p.Gly515Trp	p.G515W	ENST00000257566	NM_016569.3	515	Ggg/Tgg																																																																															
POLE	5426	MSKCC	GRCh37	12	133215877	133215877	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	200	262	0	ENST00000320574.5:c.5386A>G	p.Lys1796Glu	p.K1796E	ENST00000320574	NM_006231.2	1796	Aag/Gag																																																																															
FLT3	2322	MSKCC	GRCh37	13	28592634	28592634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	219	656	0	ENST00000241453.7:c.2511G>T	p.Met837Ile	p.M837I	ENST00000241453	NM_004119.2	837	atG/atT																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515036	103515036	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	131	309	0	ENST00000355739.4:c.1537G>C	p.Ala513Pro	p.A513P	ENST00000355739	NM_000123.3	513	Gca/Cca																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435972	110435972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	553	692	0	ENST00000375856.3:c.2429A>G	p.Tyr810Cys	p.Y810C	ENST00000375856	NM_003749.2	810	tAc/tGc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437019	110437019	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	40	75	0	ENST00000375856.3:c.1382C>G	p.Pro461Arg	p.P461R	ENST00000375856	NM_003749.2	461	cCg/cGg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95557641	95557641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	521	735	2	ENST00000343455.3:c.5426G>T	p.Gly1809Val	p.G1809V	ENST00000343455	NM_177438.2	1809	gGg/gTg																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643430	38643434	+	frameshift_variant	Frame_Shift_Del	DEL	TAAGT	TAAGT	-			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	252	655	0	ENST00000299084.4:c.906_910del	p.Leu302PhefsTer9	p.L302Ffs*9	ENST00000299084	NM_152594.2	300	acTAAGTta/acta																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632578	3632578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	210	720	0	ENST00000294008.3:c.5270G>A	p.Arg1757Lys	p.R1757K	ENST00000294008	NM_032444.2	1757	aGg/aAg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857424	9857424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	171	450	0	ENST00000330684.3:c.3977G>A	p.Gly1326Asp	p.G1326D	ENST00000330684	NM_001134407.1	1326	gGc/gAc																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349055	11349055	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	158	366	0	ENST00000332029.2:c.281G>C	p.Arg94Pro	p.R94P	ENST00000332029	NM_003745.1	94	cGc/cCc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30134479	30134479	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	214	435	2	ENST00000263025.4:c.52G>T	p.Glu18Ter	p.E18*	ENST00000263025	NM_002746.2	18	Gag/Tag																																																																															
CYLD	1540	MSKCC	GRCh37	16	50810107	50810107	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	145	558	0	ENST00000398568.2:c.931A>T	p.Arg311Trp	p.R311W	ENST00000398568	NM_001042412.1	311	Agg/Tgg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50810140	50810140	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	444	667	0	ENST00000398568.2:c.964G>T	p.Gly322Cys	p.G322C	ENST00000398568	NM_001042412.1	322	Ggt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984642	72984642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	233	660	0	ENST00000268489.5:c.2942G>T	p.Gly981Val	p.G981V	ENST00000268489	NM_006885.3	981	gGg/gTg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37667841	37667841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	448	573	2	ENST00000447079.4:c.2726G>T	p.Gly909Val	p.G909V	ENST00000447079	NM_015083.1	909	gGa/gTa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868590	37868590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	181	434	1	ENST00000269571.5:c.1037G>T	p.Gly346Val	p.G346V	ENST00000269571		346	gGc/gTc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41226531	41226531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	322	486	0	ENST00000357654.3:c.4492C>T	p.Pro1498Ser	p.P1498S	ENST00000357654	NM_007294.3	1498	Cct/Tct																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110161	3110161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	354	438	1	ENST00000078429.4:c.151G>T	p.Gly51Trp	p.G51W	ENST00000078429	NM_002067.2	51	Ggg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11172484	11172484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	553	556	0	ENST00000344626.4:c.4936G>A	p.Glu1646Lys	p.E1646K	ENST00000344626	NM_003072.3	1646	Gaa/Aaa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281190	15281190	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	566	719	0	ENST00000263388.2:c.5066G>T	p.Gly1689Val	p.G1689V	ENST00000263388	NM_000435.2	1689	gGt/gTt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349664	15349664	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	179	526	0	ENST00000263377.2:c.3910G>T	p.Val1304Leu	p.V1304L	ENST00000263377	NM_058243.2	1304	Gtg/Ttg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902217	50902217	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	539	658	0	ENST00000440232.2:c.109G>T	p.Asp37Tyr	p.D37Y	ENST00000440232	NM_002691.3	37	Gac/Tac																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716208	52716208	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	163	442	0	ENST00000322088.6:c.652G>T	p.Asp218Tyr	p.D218Y	ENST00000322088	NM_014225.5	218	Gac/Tac																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467169	25467169	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	207	510	0	ENST00000264709.3:c.1706C>G	p.Pro569Arg	p.P569R	ENST00000264709	NM_175629.2	569	cCg/cGg																																																																															
ALK	238	MSKCC	GRCh37	2	29430103	29430103	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	425	562	0	ENST00000389048.3:c.3872T>A	p.Leu1291Gln	p.L1291Q	ENST00000389048	NM_004304.4	1291	cTg/cAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010438	48010438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	252	532	0	ENST00000234420.5:c.66G>T	p.Lys22Asn	p.K22N	ENST00000234420	NM_000179.2	22	aaG/aaT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248497	212248497	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	485	379	0	ENST00000342788.4:c.3770A>T	p.Asp1257Val	p.D1257V	ENST00000342788	NM_005235.2	1257	gAc/gTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41514462	41514462	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	546	528	0	ENST00000373198.4:c.199C>G	p.Gln67Glu	p.Q67E	ENST00000373198	NM_133170.3	67	Cag/Gag																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458266	12458266	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	507	615	2	ENST00000287820.6:c.883A>T	p.Ile295Phe	p.I295F	ENST00000287820	NM_015869.4	295	Atc/Ttc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72881562	72881562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	409	421	0	ENST00000325599.8:c.557G>C	p.Arg186Pro	p.R186P	ENST00000325599	NM_018130.2	186	cGc/cCc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259500	89259500	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	182	458	0	ENST00000336596.2:c.644C>A	p.Thr215Lys	p.T215K	ENST00000336596	NM_005233.5	215	aCg/aAg																																																																															
ATR	545	MSKCC	GRCh37	3	142218552	142218552	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	196	525	0	ENST00000350721.4:c.5297G>A	p.Trp1766Ter	p.W1766*	ENST00000350721	NM_001184.3	1766	tGg/tAg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1961433	1961433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	245	575	1	ENST00000382891.5:c.3221G>T	p.Gly1074Val	p.G1074V	ENST00000382891	NM_133335.3	1074	gGg/gTg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129934	55129934	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	257	625	0	ENST00000257290.5:c.468G>T	p.Glu156Asp	p.E156D	ENST00000257290	NM_006206.4	156	gaG/gaT																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143129682	143129682	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	322	436	0	ENST00000262992.4:c.968G>A	p.Gly323Glu	p.G323E	ENST00000262992	NM_001101669.1	323	gGg/gAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541321	187541321	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	311	425	0	ENST00000441802.2:c.6419A>C	p.Gln2140Pro	p.Q2140P	ENST00000441802	NM_005245.3	2140	cAa/cCa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86659229	86659229	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	341	436	0	ENST00000274376.6:c.1518T>G	p.Tyr506Ter	p.Y506*	ENST00000274376	NM_002890.2	506	taT/taG																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031947	26031947	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	139	342	0	ENST00000244661.2:c.342T>A	p.His114Gln	p.H114Q	ENST00000244661	NM_003537.3	114	caT/caA																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032071	26032071	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	133	325	0	ENST00000244661.2:c.218G>C	p.Arg73Pro	p.R73P	ENST00000244661	NM_003537.3	73	cGa/cCa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679762	30679762	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	183	510	0	ENST00000376406.3:c.1957G>T	p.Asp653Tyr	p.D653Y	ENST00000376406	NM_014641.2	653	Gac/Tac																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120786	94120786	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	481	560	0	ENST00000369303.4:c.265T>A	p.Trp89Arg	p.W89R	ENST00000369303	NM_004440.3	89	Tgg/Agg																																																																															
FYN	2534	MSKCC	GRCh37	6	112015880	112015880	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	504	625	0	ENST00000368678.4:c.1061G>T	p.Gly354Val	p.G354V	ENST00000368678		354	gGa/gTa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117650564	117650564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	519	736	0	ENST00000368508.3:c.5294G>T	p.Ser1765Ile	p.S1765I	ENST00000368508	NM_002944.2	1765	aGt/aTt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522167	157522167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	462	487	0	ENST00000346085.5:c.4439G>A	p.Gly1480Asp	p.G1480D	ENST00000346085	NM_020732.3	1480	gGc/gAc																																																																															
HGF	3082	MSKCC	GRCh37	7	81346550	81346550	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	252	365	0	ENST00000222390.5:c.1403G>T	p.Arg468Leu	p.R468L	ENST00000222390	NM_000601.4	468	cGt/cTt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68942860	68942860	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	241	656	0	ENST00000288368.4:c.672A>T	p.Leu224Phe	p.L224F	ENST00000288368	NM_024870.2	224	ttA/ttT																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956825	68956825	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs184081186		P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	363	483	0	ENST00000288368.4:c.943G>A	p.Ala315Thr	p.A315T	ENST00000288368	NM_024870.2	315	Gct/Act																																																																															
PREX2	80243	MSKCC	GRCh37	8	68999994	68999994	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	445	649	0	ENST00000288368.4:c.2063G>T	p.Gly688Val	p.G688V	ENST00000288368	NM_024870.2	688	gGc/gTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8375935	8375935	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	155	322	0	ENST00000356435.5:c.4661+1G>T		p.X1554_splice	ENST00000356435		1554																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8389306	8389306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	776	675	0	ENST00000356435.5:c.4312G>T	p.Asp1438Tyr	p.D1438Y	ENST00000356435		1438	Gac/Tac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974739	21974739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	235	289	0	ENST00000304494.5:c.88G>T	p.Ala30Ser	p.A30S	ENST00000304494	NM_000077.4	30	Gcg/Tcg																																																																															
TEK	7010	MSKCC	GRCh37	9	27158131	27158131	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	161	495	0	ENST00000380036.4:c.355C>G	p.Arg119Gly	p.R119G	ENST00000380036	NM_000459.3	119	Cgt/Ggt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285691	87285691	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	305	411	0	ENST00000277120.3:c.28C>A	p.Pro10Thr	p.P10T	ENST00000277120		10	Ccc/Acc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342754	87342754	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	472	629	0	ENST00000277120.3:c.1039C>A	p.Gln347Lys	p.Q347K	ENST00000277120		347	Cag/Aag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211371	98211371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	358	530	0	ENST00000331920.6:c.3784C>T	p.Pro1262Ser	p.P1262S	ENST00000331920	NM_000264.3	1262	Ccc/Tcc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101904874	101904874	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	183	415	0	ENST00000374994.4:c.862C>G	p.Leu288Val	p.L288V	ENST00000374994	NM_004612.2	288	Ctt/Gtt																																																																															
ABL1	25	MSKCC	GRCh37	9	133759791	133759791	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	324	406	1	ENST00000318560.5:c.2114G>T	p.Gly705Val	p.G705V	ENST00000318560	NM_005157.4	705	gGc/gTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391520	139391520	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	508	696	0	ENST00000277541.6:c.6671A>T	p.Gln2224Leu	p.Q2224L	ENST00000277541	NM_017617.3	2224	cAg/cTg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814841	139814841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	261	668	0	ENST00000247668.2:c.834G>T	p.Lys278Asn	p.K278N	ENST00000247668	NM_021138.3	278	aaG/aaT																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932609	39932609	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	506	738	0	ENST00000378444.4:c.1990G>C	p.Glu664Gln	p.E664Q	ENST00000378444	NM_001123385.1	664	Gag/Cag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39935723	39935723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	369	502	0	ENST00000378444.4:c.149C>T	p.Pro50Leu	p.P50L	ENST00000378444	NM_001123385.1	50	cCc/cTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410407	63410407	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	381	649	1	ENST00000330258.3:c.2760G>T	p.Glu920Asp	p.E920D	ENST00000330258	NM_152424.3	920	gaG/gaT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411375	63411375	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	311	539	0	ENST00000330258.3:c.1792G>C	p.Ala598Pro	p.A598P	ENST00000330258	NM_152424.3	598	Gcc/Ccc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412083	63412083	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	556	755	0	ENST00000330258.3:c.1084C>G	p.Leu362Val	p.L362V	ENST00000330258	NM_152424.3	362	Ctg/Gtg																																																																															
AR	367	MSKCC	GRCh37	X	66766279	66766279	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	354	465	0	ENST00000374690.3:c.1291G>C	p.Ala431Pro	p.A431P	ENST00000374690	NM_000044.3	431	Gct/Cct																																																																															
AR	367	MSKCC	GRCh37	X	66937446	66937446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	387	536	1	ENST00000374690.3:c.2300C>A	p.Pro767His	p.P767H	ENST00000374690	NM_000044.3	767	cCt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541316	187541316	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AA			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	289	424	0	ENST00000441802.2:c.6424delinsTT	p.Glu2142LeufsTer3	p.E2142Lfs*3	ENST00000441802	NM_005245.3	2142	Gag/TTag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044977	47044977	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	AC			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	516	642	0	ENST00000329236.7:c.2069delinsAC	p.Phe690TyrfsTer22	p.F690Yfs*22	ENST00000329236	NM_001204466.1	690	tTc/tACc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0016366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	487	714	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0016366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	177	384	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0016367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	216	457	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5218538	5218538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	330	605	0	ENST00000357368.4:c.3941G>A	p.Arg1314His	p.R1314H	ENST00000357368	NM_002850.3	1314	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175352	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0016367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	142	348	0	ENST00000257430.4:c.4062_4063del	p.Ser1355PhefsTer19	p.S1355Ffs*19	ENST00000257430	NM_000038.5	1354	TTt/t																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118944	70118944	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	321	664	0	ENST00000245479.2:c.516C>G	p.Tyr172Ter	p.Y172*	ENST00000245479	NM_000346.3	172	taC/taG																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40710553	40710553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	606	578	1	ENST00000373198.4:c.4298G>A	p.Arg1433His	p.R1433H	ENST00000373198	NM_133170.3	1433	cGt/cAt																																																																															
ATRX	546	MSKCC	GRCh37	X	76937569	76937569	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0016367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	174	537	0	ENST00000373344.5:c.3179T>G	p.Leu1060Ter	p.L1060*	ENST00000373344	NM_000489.3	1060	tTa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0016368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	104	618	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217656	7217656	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	46	476	0	ENST00000380728.2:c.271A>T	p.Lys91Ter	p.K91*	ENST00000380728		91	Aag/Tag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138264	2138264	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	46	695	0	ENST00000219476.3:c.5197del	p.Thr1733ProfsTer93	p.T1733Pfs*93	ENST00000219476	NM_000548.3	1733	Acc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0016370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	82	668	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8497259	8497259	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	92	565	0	ENST00000356435.5:c.2332G>T	p.Asp778Tyr	p.D778Y	ENST00000356435		778	Gat/Tat																																																																															
LMO1	4004	MSKCC	GRCh37	11	8251851	8251851	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	31	376	0	ENST00000335790.3:c.226C>A	p.Arg76Ser	p.R76S	ENST00000335790	NM_002315.2	76	Cgc/Agc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56857734	56857734	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	44	351	0	ENST00000308159.5:c.770A>T	p.Gln257Leu	p.Q257L	ENST00000308159	NM_014669.4	257	cAg/cTg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267496	198267496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	56	455	1	ENST00000335508.6:c.1861G>A	p.Asp621Asn	p.D621N	ENST00000335508	NM_012433.2	621	Gat/Aat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041247	47041247	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	67	766	0	ENST00000329236.7:c.1441G>T	p.Glu481Ter	p.E481*	ENST00000329236	NM_001204466.1	481	Gaa/Taa																																																																															
AR	367	MSKCC	GRCh37	X	66765851	66765851	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	52	767	0	ENST00000374690.3:c.863C>A	p.Ala288Asp	p.A288D	ENST00000374690	NM_000044.3	288	gCc/gAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115871	8115872	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0016371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	110	614	0	ENST00000346208.3:c.1219_1220delTC	p.Ser407AlafsTer99	p.S407Afs*99	ENST00000346208		406	aTC/a																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575049	64575049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	100	464	0	ENST00000337652.1:c.773C>T	p.Ser258Leu	p.S258L	ENST00000337652	NM_130803.2	258	tCg/tTg																																																																															
NUF2	83540	MSKCC	GRCh37	1	163318779	163318779	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116669228		P-0016371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	195	764	2	ENST00000271452.3:c.1169G>A	p.Arg390Gln	p.R390Q	ENST00000271452	NM_145697.2	390	cGa/cAa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0016373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	117	694	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0016373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	86	423	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0016375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	368	560	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039658	47039659	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	348	623	0	ENST00000329236.7:c.877dup	p.Thr293AsnfsTer10	p.T293Nfs*10	ENST00000329236	NM_001204466.1	292	-/A																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246021826	246021826	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	71	498	0	ENST00000388985.4:c.1048T>C	p.Tyr350His	p.Y350H	ENST00000388985		350	Tat/Cat																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376469	118376469	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	265	514	0	ENST00000534358.1:c.9862A>G	p.Ile3288Val	p.I3288V	ENST00000534358	NM_005933.3	3288	Atc/Gtc																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197399	26197399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	20	200	0	ENST00000356476.2:c.80G>A	p.Arg27Gln	p.R27Q	ENST00000356476		27	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1274	152	981	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	57	665	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1265	90	896	1	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0016377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	51	807	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	32	660	0	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910621	50910621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	76	891	3	ENST00000440232.2:c.1724C>T	p.Ser575Leu	p.S575L	ENST00000440232	NM_002691.3	575	tCa/tTa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0016385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	36	421	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0016385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	81	603	1	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964087	28964087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	58	462	0	ENST00000282397.4:c.1815C>A	p.Ser605Arg	p.S605R	ENST00000282397	NM_002019.4	605	agC/agA																																																																															
DIS3	22894	MSKCC	GRCh37	13	73336222	73336222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	29	341	0	ENST00000377767.4:c.2181G>T	p.Gln727His	p.Q727H	ENST00000377767	NM_014953.3	727	caG/caT																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905143	50905143	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	126	706	0	ENST00000440232.2:c.425A>T	p.His142Leu	p.H142L	ENST00000440232	NM_002691.3	142	cAc/cTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041263	47041273	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCGTGAGTAG	ACCGTGAGTAG	-			P-0016385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	39	332	0	ENST00000329236.7:c.1457_1459+8del		p.X486_splice	ENST00000329236	NM_001204466.1	486																																																																																
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0016396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	637	1097	4	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217609	7217609	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	242	622	0	ENST00000380728.2:c.317+1G>T		p.X106_splice	ENST00000380728		106																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0016397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	181	931	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579399	7579400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAAGATGACAG			P-0016397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	60	944	0	ENST00000269305.4:c.277_287dup	p.Val97CysfsTer30	p.V97Cfs*30	ENST00000269305	NM_001126112.2	96	tct/tcCTGTCATCTTCt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206728	36206729	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGGTTAT			P-0016397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	37	687	0	ENST00000300305.3:c.783_784insATAACCCT	p.Gln262IlefsTer52	p.Q262Ifs*52	ENST00000300305		261	-/ATAACCCT																																																																															
MED12	9968	MSKCC	GRCh37	X	70340844	70340844	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	91	804	0	ENST00000374080.3:c.577T>C	p.Tyr193His	p.Y193H	ENST00000374080		193	Tac/Cac																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591135	67591149	+	inframe_deletion	In_Frame_Del	DEL	GAGAGACCAATACTT	GAGAGACCAATACTT	-			P-0016405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	79	467	0	ENST00000274335.5:c.1730_1744del	p.Arg577_Leu581del	p.R577_L581del	ENST00000274335		576	acGAGAGACCAATACTTg/acg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0016423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	187	556	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206667324	206667324	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	152	529	0	ENST00000367120.3:c.2117G>T	p.Arg706Leu	p.R706L	ENST00000367120	NM_014002.3	706	cGg/cTg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546575	9546575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	118	477	0	ENST00000353224.5:c.1447C>T	p.Arg483Trp	p.R483W	ENST00000353224	NM_177990.2	483	Cgg/Tgg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141105	55141105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	88	395	0	ENST00000257290.5:c.1751C>T	p.Ser584Leu	p.S584L	ENST00000257290	NM_006206.4	584	tCa/tTa																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88681424	88681424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	140	530	0	ENST00000372037.3:c.1314G>T	p.Trp438Cys	p.W438C	ENST00000372037	NM_004329.2	438	tgG/tgT																																																																															
PGR	5241	MSKCC	GRCh37	11	100933379	100933379	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	114	512	1	ENST00000325455.5:c.2011C>A	p.Gln671Lys	p.Q671K	ENST00000325455	NM_001202474.3	671	Cag/Aag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	404794	404794	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	106	518	0	ENST00000399788.2:c.4400G>T	p.Arg1467Leu	p.R1467L	ENST00000399788	NM_001042603.1	1467	cGg/cTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864465	57864465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	126	547	0	ENST00000228682.2:c.1942C>A	p.Arg648Ser	p.R648S	ENST00000228682	NM_005269.2	648	Cgt/Agt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112386	115112386	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	68	290	0	ENST00000257566.3:c.1354G>C	p.Glu452Gln	p.E452Q	ENST00000257566	NM_016569.3	452	Gag/Cag																																																																															
POLE	5426	MSKCC	GRCh37	12	133219531	133219531	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	84	455	0	ENST00000320574.5:c.4603G>C	p.Gly1535Arg	p.G1535R	ENST00000320574	NM_006231.2	1535	Ggc/Cgc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560401	95560401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	124	413	0	ENST00000343455.3:c.5188G>T	p.Gly1730Trp	p.G1730W	ENST00000343455	NM_177438.2	1730	Ggg/Tgg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99456348	99456348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	95	438	0	ENST00000268035.6:c.1665C>A	p.Asp555Glu	p.D555E	ENST00000268035	NM_000875.3	555	gaC/gaA																																																																															
NF1	4763	MSKCC	GRCh37	17	29533364	29533364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	73	281	0	ENST00000358273.4:c.1367C>T	p.Ala456Val	p.A456V	ENST00000358273	NM_001042492.2	456	gCa/gTa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098409	11098409	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	131	536	0	ENST00000344626.4:c.928delC	p.Arg310AlafsTer16	p.R310Afs*16	ENST00000344626	NM_003072.3	309	ggC/gg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965881	25965881	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	158	542	0	ENST00000435504.4:c.3325G>T	p.Gly1109Cys	p.G1109C	ENST00000435504		1109	Ggt/Tgt																																																																															
ALK	238	MSKCC	GRCh37	2	29519873	29519873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	194	639	0	ENST00000389048.3:c.1698G>T	p.Leu566Phe	p.L566F	ENST00000389048	NM_004304.4	566	ttG/ttT																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021091	31021091	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	117	391	0	ENST00000375687.4:c.1090G>T	p.Gly364Cys	p.G364C	ENST00000375687	NM_015338.5	364	Ggt/Tgt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286231	66286231	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	80	419	0	ENST00000273854.3:c.1455C>G	p.Ile485Met	p.I485M	ENST00000273854	NM_004439.5	485	atC/atG																																																																															
APC	324	MSKCC	GRCh37	5	112177053	112177053	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1460	182	726	0	ENST00000257430.4:c.5762G>T	p.Gly1921Val	p.G1921V	ENST00000257430	NM_000038.5	1921	gGt/gTt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38274823	38274823	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	87	301	0	ENST00000425967.3:c.1756+1G>T		p.X586_splice	ENST00000425967	NM_001174067.1	586																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8500810	8500810	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	90	397	0	ENST00000356435.5:c.2072C>G	p.Thr691Arg	p.T691R	ENST00000356435		691	aCa/aGa																																																																															
ATRX	546	MSKCC	GRCh37	X	76940056	76940056	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	178	387	0	ENST00000373344.5:c.692G>T	p.Cys231Phe	p.C231F	ENST00000373344	NM_000489.3	231	tGt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764146326		P-0016429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1411	47	587	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	31	572	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207118	1207118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	53	704	0	ENST00000326873.7:c.206C>A	p.Ser69Ter	p.S69*	ENST00000326873	NM_000455.4	69	tCg/tAg																																																																															
AR	367	MSKCC	GRCh37	X	66766357	66766386	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	-			P-0016431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	12	99	1	ENST00000374690.3:c.1391_1420del	p.Gly464_Gly473del	p.G464_G473del	ENST00000374690	NM_000044.3	457	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGC/-																																																																															
BLM	641	MSKCC	GRCh37	15	91304375	91304375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	22	551	1	ENST00000355112.3:c.1772G>T	p.Arg591Leu	p.R591L	ENST00000355112	NM_000057.2	591	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577572	7577572	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730882004		P-0016431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	47	441	0	ENST00000269305.4:c.709A>G	p.Met237Val	p.M237V	ENST00000269305	NM_001126112.2	237	Atg/Gtg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11294268	11294268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	27	462	3	ENST00000361445.4:c.2263C>T	p.Arg755Cys	p.R755C	ENST00000361445	NM_004958.3	755	Cgc/Tgc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73352342	73352342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	61	387	1	ENST00000377767.4:c.563G>T	p.Gly188Val	p.G188V	ENST00000377767	NM_014953.3	188	gGa/gTa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135397	30135397	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	42	353	0	ENST00000331968.5:c.421G>C	p.Asp141His	p.D141H	ENST00000331968	NM_002742.2	141	Gac/Cac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9984874	9984874	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	46	566	2	ENST00000330684.3:c.1091T>C	p.Ile364Thr	p.I364T	ENST00000330684	NM_001134407.1	364	aTt/aCt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448544	89448544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	40	460	0	ENST00000336596.2:c.1508C>T	p.Thr503Ile	p.T503I	ENST00000336596	NM_005233.5	503	aCt/aTt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176696757	176696757	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	33	305	0	ENST00000439151.2:c.5458G>T	p.Val1820Leu	p.V1820L	ENST00000439151	NM_022455.4	1820	Gtg/Ttg																																																																															
AR	367	MSKCC	GRCh37	X	66766226	66766226	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	31	302	0	ENST00000374690.3:c.1238G>T	p.Ser413Ile	p.S413I	ENST00000374690	NM_000044.3	413	aGc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0016433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	191	388	0	ENST00000269305.4:c.559+2T>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
PMS2	5395	MSKCC	GRCh37	7	6027103	6027103	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	89	67	0	ENST00000265849.7:c.1293G>C	p.Glu431Asp	p.E431D	ENST00000265849	NM_000535.5	431	gaG/gaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	193	717	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48586250	48586250	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	89	583	0	ENST00000342988.3:c.919G>T	p.Glu307Ter	p.E307*	ENST00000342988	NM_005359.5	307	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0016434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	134	653	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49426909	49426909	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	26	326	0	ENST00000301067.7:c.11579A>G	p.Gln3860Arg	p.Q3860R	ENST00000301067	NM_003482.3	3860	cAg/cGg																																																																															
CDK6	1021	MSKCC	GRCh37	7	92252389	92252389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	43	472	0	ENST00000265734.4:c.659G>A	p.Arg220His	p.R220H	ENST00000265734	NM_001259.6	220	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	83	570	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0016443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	94	616	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259439	55259439	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs397517126		P-0016445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	519	401	0	ENST00000275493.2:c.2497T>G	p.Leu833Val	p.L833V	ENST00000275493	NM_005228.3	833	Ttg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	544	577	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249022	55249022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs567477136		P-0016445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	613	489	0	ENST00000275493.2:c.2320G>A	p.Val774Met	p.V774M	ENST00000275493	NM_005228.3	774	Gtg/Atg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106031	8106031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	149	486	0	ENST00000346208.3:c.851G>A	p.Cys284Tyr	p.C284Y	ENST00000346208		284	tGc/tAc																																																																															
WT1	7490	MSKCC	GRCh37	11	32417954	32417954	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0016445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	148	397	0	ENST00000332351.3:c.1099-1G>T		p.X367_splice	ENST00000332351	NM_024426.4	367																																																																																
CIC	23152	MSKCC	GRCh37	19	42791854	42791854	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	379	607	0	ENST00000575354.2:c.740A>G	p.Gln247Arg	p.Q247R	ENST00000575354	NM_015125.3	247	cAg/cGg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455105	50455105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	131	387	0	ENST00000331340.3:c.652G>A	p.Glu218Lys	p.E218K	ENST00000331340	NM_006060.4	218	Gaa/Aaa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0016446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	24	138	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	154	475	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0016446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	184	608	9	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	9	636	1	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432543	49432543	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	168	471	0	ENST00000301067.7:c.8596G>T	p.Glu2866Ter	p.E2866*	ENST00000301067	NM_003482.3	2866	Gag/Tag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0016450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	311	570	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0016452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	143	577	1	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998537	100998537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	82	409	0	ENST00000325455.5:c.1265C>T	p.Pro422Leu	p.P422L	ENST00000325455	NM_001202474.3	422	cCg/cTg																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521558	46521558	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	68	646	0	ENST00000262741.5:c.850C>A	p.Gln284Lys	p.Q284K	ENST00000262741	NM_003629.3	284	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7572932	7572932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	70	342	0	ENST00000269305.4:c.1177G>A	p.Asp393Asn	p.D393N	ENST00000269305	NM_001126112.2	393	Gac/Aac																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56780563	56780563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	68	420	0	ENST00000337432.4:c.578G>A	p.Arg193Gln	p.R193Q	ENST00000337432	NM_058216.2	193	cGa/cAa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610589	10610589	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	125	495	1	ENST00000171111.5:c.121G>T	p.Glu41Ter	p.E41*	ENST00000171111	NM_203500.1	41	Gag/Tag																																																																															
CIC	23152	MSKCC	GRCh37	19	42795012	42795012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	76	631	0	ENST00000575354.2:c.2092G>A	p.Glu698Lys	p.E698K	ENST00000575354	NM_015125.3	698	Gag/Aag																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714712	52714712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	48	470	1	ENST00000322088.6:c.470G>A	p.Arg157Gln	p.R157Q	ENST00000322088	NM_014225.5	157	cGa/cAa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212570070	212570070	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	89	457	0	ENST00000342788.4:c.1171G>T	p.Val391Phe	p.V391F	ENST00000342788	NM_005235.2	391	Gtc/Ttc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52702662	52702662	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0016452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	76	227	0	ENST00000394830.3:c.237-1G>T		p.X79_splice	ENST00000394830	NM_018313.4	79																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89498460	89498460	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	47	257	0	ENST00000336596.2:c.2432G>T	p.Gly811Val	p.G811V	ENST00000336596	NM_005233.5	811	gGg/gTg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128199908	128199908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	56	261	0	ENST00000341105.2:c.1397C>T	p.Ser466Phe	p.S466F	ENST00000341105	NM_032638.4	466	tCc/tTc																																																																															
ATR	545	MSKCC	GRCh37	3	142279118	142279118	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	129	411	0	ENST00000350721.4:c.1528C>G	p.Gln510Glu	p.Q510E	ENST00000350721	NM_001184.3	510	Caa/Gaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356239	66356239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	123	477	0	ENST00000273854.3:c.1258G>T	p.Gly420Cys	p.G420C	ENST00000273854	NM_004439.5	420	Ggc/Tgc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137325971	137325971	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	142	520	0	ENST00000481739.1:c.1159G>T	p.Ala387Ser	p.A387S	ENST00000481739	NM_002957.4	387	Gcc/Tcc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0016454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	635	847	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	223	440	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
CDH1	999	MSKCC	GRCh37	16	68855957	68855957	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	326	631	0	ENST00000261769.5:c.1766del	p.Asn589MetfsTer24	p.N589Mfs*24	ENST00000261769	NM_004360.3	589	Aat/at																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871298	35871298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	208	427	1	ENST00000303115.3:c.520G>A	p.Asp174Asn	p.D174N	ENST00000303115	NM_002185.3	174	Gat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0016456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	210	566	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
CBFB	865	MSKCC	GRCh37	16	67100685	67100685	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	225	519	0	ENST00000412916.2:c.383A>G	p.Asp128Gly	p.D128G	ENST00000412916		128	gAt/gGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249102	55249103	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TATGTCCGGGAACACAAAGACAATATTGGCTCCCAGTACCTGCTCAA			P-0016456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	18	680	0	ENST00000275493.2:c.2401_2447dup	p.Trp817MetfsTer25	p.W817Mfs*25	ENST00000275493	NM_005228.3	800	-/TATGTCCGGGAACACAAAGACAATATTGGCTCCCAGTACCTGCTCAA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949643	151949643	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	223	510	0	ENST00000262189.6:c.1457del	p.Asn486IlefsTer9	p.N486Ifs*9	ENST00000262189	NM_170606.2	486	aAt/at																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	28	501	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68849449	68849449	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	187	449	0	ENST00000261769.5:c.1353del	p.Leu452TyrfsTer3	p.L452Yfs*3	ENST00000261769	NM_004360.3	451	aTt/at																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859623	151859623	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0016458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	85	252	0	ENST00000262189.6:c.11039T>G	p.Leu3680Ter	p.L3680*	ENST00000262189	NM_170606.2	3680	tTa/tGa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028886	47028886	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	89	198	0	ENST00000329236.7:c.190C>T	p.Gln64Ter	p.Q64*	ENST00000329236	NM_001204466.1	64	Cag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	144	367	0	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604787	48604787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	28	383	0	ENST00000342988.3:c.1609G>T	p.Asp537Tyr	p.D537Y	ENST00000342988	NM_005359.5	537	Gac/Tac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110032	115110032	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	147	641	0	ENST00000257566.3:c.1846T>A	p.Ser616Thr	p.S616T	ENST00000257566	NM_016569.3	616	Tct/Act																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435004	110435004	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	200	543	1	ENST00000375856.3:c.3397G>T	p.Ala1133Ser	p.A1133S	ENST00000375856	NM_003749.2	1133	Gcc/Tcc																																																																															
NF1	4763	MSKCC	GRCh37	17	29554234	29554234	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	130	354	1	ENST00000358273.4:c.2252-2A>T		p.X751_splice	ENST00000358273	NM_001042492.2	751																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11113778	11113778	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	164	554	0	ENST00000344626.4:c.1886C>G	p.Thr629Arg	p.T629R	ENST00000344626	NM_003072.3	629	aCa/aGa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180651	56180651	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	74	319	0	ENST00000399503.3:c.3980C>T	p.Ala1327Val	p.A1327V	ENST00000399503	NM_005921.1	1327	gCa/gTa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562798	176562798	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	133	607	0	ENST00000439151.2:c.694C>G	p.Gln232Glu	p.Q232E	ENST00000439151	NM_022455.4	232	Cag/Gag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030369	180030369	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	206	547	0	ENST00000261937.6:c.3915T>G	p.Asn1305Lys	p.N1305K	ENST00000261937	NM_182925.4	1305	aaT/aaG																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93969150	93969150	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	56	359	1	ENST00000369303.4:c.1846G>T	p.Asp616Tyr	p.D616Y	ENST00000369303	NM_004440.3	616	Gac/Tac																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93969156	93969156	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	31	349	0	ENST00000369303.4:c.1840T>C	p.Tyr614His	p.Y614H	ENST00000369303	NM_004440.3	614	Tat/Cat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8339020	8339020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	75	436	0	ENST00000356435.5:c.5281G>A	p.Glu1761Lys	p.E1761K	ENST00000356435		1761	Gaa/Aaa																																																																															
BTK	695	MSKCC	GRCh37	X	100608342	100608342	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	168	264	0	ENST00000308731.7:c.1751-3T>C		p.X584_splice	ENST00000308731	NM_000061.2	584																																																																																
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057520005		P-0016465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	848	765	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																															
ATM	472	MSKCC	GRCh37	11	108199946	108199947	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	412	335	0	ENST00000278616.4:c.7289dup	p.His2430GlnfsTer2	p.H2430Qfs*2	ENST00000278616	NM_000051.3	2430	cat/cAat																																																																															
RB1	5925	MSKCC	GRCh37	13	48954379	48954379	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0016465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	414	292	0	ENST00000267163.4:c.1498+2T>G		p.X500_splice	ENST00000267163	NM_000321.2	500																																																																																
AXL	558	MSKCC	GRCh37	19	41745103	41745103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	283	645	0	ENST00000301178.4:c.1169C>A	p.Thr390Asn	p.T390N	ENST00000301178	NM_021913.4	390	aCc/aAc																																																																															
BTK	695	MSKCC	GRCh37	X	100630140	100630140	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	46	434	0	ENST00000308731.7:c.133G>C	p.Glu45Gln	p.E45Q	ENST00000308731	NM_000061.2	45	Gaa/Caa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	72	569	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SMO	6608	MSKCC	GRCh37	7	128829039	128829040	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			P-0016466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	11	20	0	ENST00000249373.3:c.67_69dupCTG	p.Leu23dup	p.L23dup	ENST00000249373	NM_005631.4	23	ggg/ggGCTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115971	8115972	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	157	266	0	ENST00000346208.3:c.1318dup	p.Thr440AsnfsTer67	p.T440Nfs*67	ENST00000346208		439	-/A																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78704367	78704367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	180	345	0	ENST00000306801.3:c.515C>T	p.Thr172Met	p.T172M	ENST00000306801	NM_020761.2	172	aCg/aTg																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0016469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	59	188	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																																
GATA3	2625	MSKCC	GRCh37	10	8115750	8115750	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	198	564	0	ENST00000346208.3:c.1096C>T	p.Arg366Ter	p.R366*	ENST00000346208		366	Cga/Tga																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562547	21562547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	20	30	0	ENST00000382592.4:c.1372G>A	p.Val458Met	p.V458M	ENST00000382592	NM_014572.2	458	Gtg/Atg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95590713	95590713	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	93	305	1	ENST00000343455.3:c.1196A>T	p.Glu399Val	p.E399V	ENST00000343455	NM_177438.2	399	gAg/gTg																																																																															
ALK	238	MSKCC	GRCh37	2	29917805	29917805	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	107	697	2	ENST00000389048.3:c.863G>A	p.Trp288Ter	p.W288*	ENST00000389048	NM_004304.4	288	tGg/tAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	643	646	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919231	178919231	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	391	363	0	ENST00000263967.3:c.716T>G	p.Leu239Arg	p.L239R	ENST00000263967	NM_006218.2	239	cTa/cGa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061461	38061461	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	336	283	0	ENST00000250448.2:c.528C>G	p.Ile176Met	p.I176M	ENST00000250448	NM_004496.3	176	atC/atG																																																																															
MPL	4352	MSKCC	GRCh37	1	43804317	43804317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	546	526	1	ENST00000372470.3:c.317C>T	p.Pro106Leu	p.P106L	ENST00000372470	NM_005373.2	106	cCg/cTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031871	10031871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1207	510	524	0	ENST00000330684.3:c.952G>A	p.Ala318Thr	p.A318T	ENST00000330684	NM_001134407.1	318	Gcc/Acc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367267	50367267	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	362	363	0	ENST00000331340.3:c.74A>T	p.Asp25Val	p.D25V	ENST00000331340	NM_006060.4	25	gAt/gTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874644	151874645	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0016473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	324	316	0	ENST00000262189.6:c.7893_7894del	p.Gln2632ThrfsTer24	p.Q2632Tfs*24	ENST00000262189	NM_170606.2	2631	tcTCaa/tcaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258907	16258907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	180	738	2	ENST00000375759.3:c.6172G>A	p.Ala2058Thr	p.A2058T	ENST00000375759	NM_015001.2	2058	Gcc/Acc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285570	46285570	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs78222561		P-0016474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	59	212	0	ENST00000334344.6:c.4930C>T	p.Gln1644Ter	p.Q1644*	ENST00000334344	NM_152641.2	1644	Cag/Tag																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012485	29012485	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0016474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	39	327	0	ENST00000282397.4:c.389-3C>T		p.X130_splice	ENST00000282397	NM_002019.4	130																																																																																
NUP93	9688	MSKCC	GRCh37	16	56832399	56832399	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	72	342	0	ENST00000308159.5:c.309G>C	p.Lys103Asn	p.K103N	ENST00000308159	NM_014669.4	103	aaG/aaC																																																																															
CBFB	865	MSKCC	GRCh37	16	67063640	67063640	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	171	383	0	ENST00000412916.2:c.89C>G	p.Thr30Arg	p.T30R	ENST00000412916		30	aCg/aGg																																																																															
CDH1	999	MSKCC	GRCh37	16	68856002	68856002	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	327	546	3	ENST00000261769.5:c.1810G>T	p.Glu604Ter	p.E604*	ENST00000261769	NM_004360.3	604	Gag/Tag																																																																															
AXL	558	MSKCC	GRCh37	19	41762475	41762475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	115	426	0	ENST00000301178.4:c.2155G>A	p.Glu719Lys	p.E719K	ENST00000301178	NM_021913.4	719	Gag/Aag																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271393	26271393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	96	314	0	ENST00000305910.3:c.220G>A	p.Glu74Lys	p.E74K	ENST00000305910	NM_003534.2	74	Gaa/Aaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151851412	151851412	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	149	568	0	ENST00000262189.6:c.12079G>T	p.Glu4027Ter	p.E4027*	ENST00000262189	NM_170606.2	4027	Gag/Tag																																																																															
MYC	4609	MSKCC	GRCh37	8	128753130	128753130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	125	428	0	ENST00000377970.2:c.1291G>A	p.Glu431Lys	p.E431K	ENST00000377970	NM_002467.4	431	Gaa/Aaa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5022096	5022096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	93	471	0	ENST00000381652.3:c.109C>T	p.Pro37Ser	p.P37S	ENST00000381652	NM_004972.3	37	Cca/Tca																																																																															
ATRX	546	MSKCC	GRCh37	X	76939175	76939175	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	94	552	1	ENST00000373344.5:c.1573C>A	p.Pro525Thr	p.P525T	ENST00000373344	NM_000489.3	525	Cca/Aca																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	171	350	0	ENST00000206249.3:c.1607T>A	p.Leu536His	p.L536H	ENST00000206249	NM_000125.3	536	cTc/cAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68844109	68844110	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	164	429	0	ENST00000261769.5:c.698dupA	p.His233GlnfsTer11	p.H233Qfs*11	ENST00000261769	NM_004360.3	233	cac/cAac																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5240271	5240271	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145504993		P-0016475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	239	611	0	ENST00000357368.4:c.1643C>T	p.Pro548Leu	p.P548L	ENST00000357368	NM_002850.3	548	cCg/cTg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0016479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	172	366	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2103410	2103410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	89	601	1	ENST00000219476.3:c.293G>A	p.Arg98Gln	p.R98Q	ENST00000219476	NM_000548.3	98	cGg/cAg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223853	53223853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1157	138	965	0	ENST00000375401.3:c.3506C>T	p.Ser1169Leu	p.S1169L	ENST00000375401	NM_004187.3	1169	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0016481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	81	1046	1	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
RB1	5925	MSKCC	GRCh37	13	48941654	48941654	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	37	334	0	ENST00000267163.4:c.964G>T	p.Glu322Ter	p.E322*	ENST00000267163	NM_000321.2	322	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	8	495	0	ENST00000269305.4:c.528C>A	p.Cys176Ter	p.C176*	ENST00000269305	NM_001126112.2	176	tgC/tgA																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841345	15841345	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	34	358	0	ENST00000307771.7:c.1429C>T	p.Gln477Ter	p.Q477*	ENST00000307771	NM_005089.3	477	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097742	27097742	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	65	719	0	ENST00000324856.7:c.3331G>T	p.Glu1111Ter	p.E1111*	ENST00000324856	NM_006015.4	1111	Gaa/Taa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120508112	120508112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	19	525	1	ENST00000256646.2:c.1645G>T	p.Asp549Tyr	p.D549Y	ENST00000256646	NM_024408.3	549	Gat/Tat																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851298	156851298	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	116	714	1	ENST00000524377.1:c.2255G>T	p.Cys752Phe	p.C752F	ENST00000524377	NM_002529.3	752	tGc/tTc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162737021	162737021	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0016481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	35	408	0	ENST00000367921.3:c.1165C>G	p.Pro389Ala	p.P389A	ENST00000367921	NM_006182.2	389	Cca/Gca																																																																															
TET1	80312	MSKCC	GRCh37	10	70333034	70333034	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	66	905	0	ENST00000373644.4:c.939C>A	p.Asn313Lys	p.N313K	ENST00000373644	NM_030625.2	313	aaC/aaA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444313	49444313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	81	741	0	ENST00000301067.7:c.3058C>T	p.Leu1020Phe	p.L1020F	ENST00000301067	NM_003482.3	1020	Ctt/Ttt																																																																															
POLE	5426	MSKCC	GRCh37	12	133245312	133245312	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	80	716	0	ENST00000320574.5:c.1935G>C	p.Met645Ile	p.M645I	ENST00000320574	NM_006231.2	645	atG/atC																																																																															
DIS3	22894	MSKCC	GRCh37	13	73335944	73335944	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	32	434	0	ENST00000377767.4:c.2351A>T	p.Asp784Val	p.D784V	ENST00000377767	NM_014953.3	784	gAt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220687	1220687	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	107	798	0	ENST00000326873.7:c.706del	p.Val236TrpfsTer51	p.V236Wfs*51	ENST00000326873	NM_000455.4	235	aaG/aa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212692	36212692	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	66	684	0	ENST00000222270.7:c.2443G>T	p.Ala815Ser	p.A815S	ENST00000222270	NM_014727.1	815	Gca/Tca																																																																															
ALK	238	MSKCC	GRCh37	2	29474059	29474059	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	39	674	0	ENST00000389048.3:c.2116C>A	p.Gln706Lys	p.Q706K	ENST00000389048	NM_004304.4	706	Cag/Aag																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546622	9546622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	19	471	0	ENST00000353224.5:c.1400C>A	p.Thr467Asn	p.T467N	ENST00000353224	NM_177990.2	467	aCc/aAc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801174	1801174	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	57	766	0	ENST00000260795.2:c.303C>G	p.His101Gln	p.H101Q	ENST00000260795		101	caC/caG																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56152569	56152569	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	104	270	0	ENST00000399503.3:c.625G>T	p.Gly209Trp	p.G209W	ENST00000399503	NM_005921.1	209	Ggg/Tgg																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045838	26045838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	60	338	0	ENST00000540144.1:c.200C>T	p.Pro67Leu	p.P67L	ENST00000540144	NM_003531.2	67	cCg/cTg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200086	138200086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	52	372	0	ENST00000237289.4:c.1504C>T	p.Arg502Trp	p.R502W	ENST00000237289	NM_001270507.1	502	Cgg/Tgg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992764	68992764	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	27	763	0	ENST00000288368.4:c.1729C>T	p.Arg577Ter	p.R577*	ENST00000288368	NM_024870.2	577	Cga/Tga																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8436594	8436594	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0016481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	25	559	0	ENST00000356435.5:c.4084G>T	p.Glu1362Ter	p.E1362*	ENST00000356435		1362	Gag/Tag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486032	8486032	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	15	500	0	ENST00000356435.5:c.2785G>T	p.Gly929Cys	p.G929C	ENST00000356435		929	Ggc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49437439	49437439	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	188	600	0	ENST00000301067.7:c.5446G>T	p.Glu1816Ter	p.E1816*	ENST00000301067	NM_003482.3	1816	Gaa/Taa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992619	72992619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	154	431	0	ENST00000268489.5:c.1426G>A	p.Glu476Lys	p.E476K	ENST00000268489	NM_006885.3	476	Gag/Aag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965707	93965707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	104	538	0	ENST00000369303.4:c.2221G>A	p.Gly741Arg	p.G741R	ENST00000369303	NM_004440.3	741	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	60	659	0	ENST00000269305.4:c.487T>G	p.Tyr163Asp	p.Y163D	ENST00000269305	NM_001126112.2	163	Tac/Gac																																																																															
POLE	5426	MSKCC	GRCh37	12	133202843	133202843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	33	648	0	ENST00000320574.5:c.6391C>T	p.Arg2131Cys	p.R2131C	ENST00000320574	NM_006231.2	2131	Cgc/Tgc																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348948	11348948	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	47	772	0	ENST00000332029.2:c.388T>C	p.Phe130Leu	p.F130L	ENST00000332029	NM_003745.1	130	Ttt/Ctt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290223	15290223	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	143	893	0	ENST00000263388.2:c.3412A>C	p.Ile1138Leu	p.I1138L	ENST00000263388	NM_000435.2	1138	Att/Ctt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149495481	149495481	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	70	957	1	ENST00000261799.4:c.3166T>A	p.Ser1056Thr	p.S1056T	ENST00000261799	NM_002609.3	1056	Tca/Aca																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70967599	70967599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	59	619	0	ENST00000276594.2:c.1424G>A	p.Ser475Asn	p.S475N	ENST00000276594	NM_024504.3	475	aGc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	384	702	0	ENST00000269305.4:c.808T>C	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	Ttt/Ctt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38277065	38277065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	136	390	0	ENST00000425967.3:c.1363C>T	p.Arg455Cys	p.R455C	ENST00000425967	NM_001174067.1	455	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175213	112175213	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	74	223	0	ENST00000257430.4:c.3922A>T	p.Lys1308Ter	p.K1308*	ENST00000257430	NM_000038.5	1308	Aaa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49418624	49418624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	89	519	2	ENST00000301067.7:c.15890C>T	p.Thr5297Met	p.T5297M	ENST00000301067	NM_003482.3	5297	aCg/aTg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59876603	59876603	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	273	414	0	ENST00000259008.2:c.1198G>T	p.Asp400Tyr	p.D400Y	ENST00000259008	NM_032043.2	400	Gac/Tac																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675186	30675186	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	141	540	0	ENST00000376406.3:c.3059T>C	p.Ile1020Thr	p.I1020T	ENST00000376406	NM_014641.2	1020	aTc/aCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0016487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	338	806	3	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	157	354	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112173656	112173656	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	120	374	0	ENST00000257430.4:c.2365C>T	p.Gln789Ter	p.Q789*	ENST00000257430	NM_000038.5	789	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0016487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	472	579	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110030	115110031	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0016487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	252	678	0	ENST00000257566.3:c.1847_1848del	p.Ser616CysfsTer75	p.S616Cfs*75	ENST00000257566	NM_016569.3	616	tCT/t																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43707791	43707791	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	225	513	0	ENST00000382044.4:c.5089+1G>T		p.X1697_splice	ENST00000382044	NM_001141980.1	1697																																																																																
NKX3-1	4824	MSKCC	GRCh37	8	23538873	23538873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	123	321	0	ENST00000380871.4:c.566G>A	p.Gly189Glu	p.G189E	ENST00000380871	NM_006167.3	189	gGa/gAa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412438	63412438	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	260	819	0	ENST00000330258.3:c.729del	p.Glu244AsnfsTer38	p.E244Nfs*38	ENST00000330258	NM_152424.3	243	ccA/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0016490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1196	66	883	1	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165782	118165782	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	64	354	0	ENST00000369448.3:c.292G>C	p.Ala98Pro	p.A98P	ENST00000369448	NM_017709.3	98	Gct/Cct																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742459	17742459	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	44	528	0	ENST00000250003.3:c.641G>T	p.Ser214Ile	p.S214I	ENST00000250003	NM_002478.4	214	aGc/aTc																																																																															
ATM	472	MSKCC	GRCh37	11	108198475	108198475	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	115	432	0	ENST00000278616.4:c.7079A>C	p.Tyr2360Ser	p.Y2360S	ENST00000278616	NM_000051.3	2360	tAt/tCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	260	750	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109809	115109809	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	61	717	0	ENST00000257566.3:c.2069C>G	p.Ser690Cys	p.S690C	ENST00000257566	NM_016569.3	690	tCt/tGt																																																																															
POLE	5426	MSKCC	GRCh37	12	133214645	133214645	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	85	422	1	ENST00000320574.5:c.5633G>T	p.Arg1878Leu	p.R1878L	ENST00000320574	NM_006231.2	1878	cGc/cTc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678476	88678476	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	61	559	0	ENST00000360948.2:c.1060C>A	p.Gln354Lys	p.Q354K	ENST00000360948	NM_001012338.2	354	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576923	7576928	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGTGCT	AGTGCT	-			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	99	537	0	ENST00000269305.4:c.920-2_923del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	134	870	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
EZH1	2145	MSKCC	GRCh37	17	40859988	40859988	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	108	469	0	ENST00000428826.2:c.1648T>C	p.Cys550Arg	p.C550R	ENST00000428826		550	Tgc/Cgc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602797	10602797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	139	763	0	ENST00000171111.5:c.781C>T	p.Arg261Trp	p.R261W	ENST00000171111	NM_203500.1	261	Cgg/Tgg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171732	36171732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	122	319	1	ENST00000300305.3:c.833C>T	p.Pro278Leu	p.P278L	ENST00000300305		278	cCg/cTg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133824	55133825	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	83	529	1	ENST00000257290.5:c.1037_1038delinsTT	p.Arg346Ile	p.R346I	ENST00000257290	NM_006206.4	346	aGG/aTT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231751	66231751	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	53	441	1	ENST00000273854.3:c.1949A>T	p.Tyr650Phe	p.Y650F	ENST00000273854	NM_004439.5	650	tAc/tTc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900170	101900170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	71	234	0	ENST00000374994.4:c.604G>A	p.Ala202Thr	p.A202T	ENST00000374994	NM_004612.2	202	Gcg/Acg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	47	526	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138433507	138433507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	43	367	1	ENST00000289153.2:c.1105G>A	p.Val369Ile	p.V369I	ENST00000289153	NM_006219.2	369	Gta/Ata																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145645	11145645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	323	384	0	ENST00000344626.4:c.4007G>A	p.Arg1336His	p.R1336H	ENST00000344626	NM_003072.3	1336	cGc/cAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836798	151836798	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	692	452	0	ENST00000262189.6:c.14422G>T	p.Glu4808Ter	p.E4808*	ENST00000262189	NM_170606.2	4808	Gaa/Taa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692780	89692780	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	322	469	0	ENST00000371953.3:c.264T>A	p.Tyr88Ter	p.Y88*	ENST00000371953	NM_000314.4	88	taT/taA																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098493	47098493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	114	351	0	ENST00000409792.3:c.6781G>A	p.Ala2261Thr	p.A2261T	ENST00000409792	NM_014159.6	2261	Gcc/Acc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200428	138200428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	163	421	0	ENST00000237289.4:c.1846G>A	p.Gly616Arg	p.G616R	ENST00000237289	NM_001270507.1	616	Ggg/Agg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0016503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	720	396	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0016508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	368	489	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0016508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	792	494	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
HGF	3082	MSKCC	GRCh37	7	81350155	81350155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	388	324	0	ENST00000222390.5:c.1177C>T	p.Arg393Cys	p.R393C	ENST00000222390	NM_000601.4	393	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175240	112175256	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGATCCTGTGAGCGA	GAAGATCCTGTGAGCGA	-			P-0016508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	311	250	0	ENST00000257430.4:c.3949_3965del	p.Glu1317SerfsTer9	p.E1317Sfs*9	ENST00000257430	NM_000038.5	1317	GAAGATCCTGTGAGCGAa/a																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	8	577	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120471762	120471762	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	64	541	1	ENST00000256646.2:c.3729T>A	p.Asp1243Glu	p.D1243E	ENST00000256646	NM_024408.3	1243	gaT/gaA																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514107	69514107	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	143	554	0	ENST00000294312.3:c.574C>A	p.Leu192Met	p.L192M	ENST00000294312	NM_005117.2	192	Ctg/Atg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102207745	102207745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	38	472	0	ENST00000263464.3:c.1727T>C	p.Val576Ala	p.V576A	ENST00000263464	NM_001165.4	576	gTa/gCa																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40678575	40678575	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	121	560	1	ENST00000249776.8:c.317G>T	p.Arg106Leu	p.R106L	ENST00000249776	NM_033286.3	106	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	101	502	0	ENST00000269305.4:c.731G>T	p.Gly244Val	p.G244V	ENST00000269305	NM_001126112.2	244	gGc/gTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220599	1220617	+	frameshift_variant	Frame_Shift_Del	DEL	CGGACGACACCTGCCGGAC	CGGACGACACCTGCCGGAC	TGT			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	177	599	3	ENST00000326873.7:c.617_635delinsTGT	p.Ala206ValfsTer76	p.A206Vfs*76	ENST00000326873	NM_000455.4	206	gCGGACGACACCTGCCGGACc/gTGTc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171681	36171681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	63	308	0	ENST00000300305.3:c.884C>A	p.Ser295Tyr	p.S295Y	ENST00000300305		295	tCt/tAt																																																																															
TP63	8626	MSKCC	GRCh37	3	189455552	189455552	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	155	555	0	ENST00000264731.3:c.86T>C	p.Phe29Ser	p.F29S	ENST00000264731	NM_003722.4	29	tTc/tCc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671636	30671636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	51	438	0	ENST00000376406.3:c.5324C>T	p.Ser1775Phe	p.S1775F	ENST00000376406	NM_014641.2	1775	tCt/tTt																																																																															
HGF	3082	MSKCC	GRCh37	7	81346634	81346634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	84	334	0	ENST00000222390.5:c.1319G>T	p.Cys440Phe	p.C440F	ENST00000222390	NM_000601.4	440	tGc/tTc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453145	140453145	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	395	489	0	ENST00000288602.6:c.1790T>A	p.Leu597Gln	p.L597Q	ENST00000288602	NM_004333.4	597	cTa/cAa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8501029	8501029	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	77	310	0	ENST00000356435.5:c.1853G>T	p.Cys618Phe	p.C618F	ENST00000356435		618	tGc/tTc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87475992	87475992	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1223	133	868	0	ENST00000277120.3:c.1434A>T	p.Arg478Ser	p.R478S	ENST00000277120		478	agA/agT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044557	47044557	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	81	330	1	ENST00000329236.7:c.1820G>T	p.Arg607Leu	p.R607L	ENST00000329236	NM_001204466.1	607	cGg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0016526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	344	576	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
TET1	80312	MSKCC	GRCh37	10	70451131	70451131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	305	463	1	ENST00000373644.4:c.5971G>A	p.Asp1991Asn	p.D1991N	ENST00000373644	NM_030625.2	1991	Gat/Aat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914298	32914298	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	336	454	0	ENST00000380152.3:c.5806A>G	p.Met1936Val	p.M1936V	ENST00000380152		1936	Atg/Gtg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867029	45867029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	229	373	0	ENST00000391945.4:c.1090C>T	p.Arg364Cys	p.R364C	ENST00000391945	NM_000400.3	364	Cgc/Tgc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665402	138665402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	344	572	0	ENST00000330315.3:c.163C>G	p.Pro55Ala	p.P55A	ENST00000330315	NM_023067.3	55	Ccc/Gcc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0016527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	105	365	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0016527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	129	570	1	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1219381	1219381	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	126	464	0	ENST00000326873.7:c.433G>T	p.Glu145Ter	p.E145*	ENST00000326873	NM_000455.4	145	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599969	10599969	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	176	631	0	ENST00000171111.5:c.1607G>C	p.Arg536Pro	p.R536P	ENST00000171111	NM_203500.1	536	cGc/cCc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11151992	11151992	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	103	387	2	ENST00000344626.4:c.4180G>T	p.Glu1394Ter	p.E1394*	ENST00000344626	NM_003072.3	1394	Gag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538329	187538329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	124	416	0	ENST00000441802.2:c.8905G>T	p.Val2969Phe	p.V2969F	ENST00000441802	NM_005245.3	2969	Gtt/Ttt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877899	151877899	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	82	318	0	ENST00000262189.6:c.7046T>A	p.Phe2349Tyr	p.F2349Y	ENST00000262189	NM_170606.2	2349	tTc/tAc																																																																															
ATM	472	MSKCC	GRCh37	11	108115753	108115753	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	54	341	0	ENST00000278616.4:c.901G>T	p.Gly301Cys	p.G301C	ENST00000278616	NM_000051.3	301	Ggt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	275	512	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PARP1	142	MSKCC	GRCh37	1	226552774	226552774	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	331	447	0	ENST00000366794.5:c.2587G>T	p.Gly863Trp	p.G863W	ENST00000366794	NM_001618.3	863	Ggg/Tgg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861856	57861856	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	154	450	0	ENST00000228682.2:c.1157T>A	p.Val386Glu	p.V386E	ENST00000228682	NM_005269.2	386	gTg/gAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152082	11152082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	164	413	0	ENST00000344626.4:c.4270C>T	p.Pro1424Ser	p.P1424S	ENST00000344626	NM_003072.3	1424	Ccg/Tcg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044839	47044839	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0016539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	158	457	0	ENST00000329236.7:c.1933-2A>G		p.X645_splice	ENST00000329236	NM_001204466.1	645																																																																																
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0016542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	581	496	2	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519930		P-0016542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	290	462	5	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40710649	40710649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	270	404	1	ENST00000373198.4:c.4202G>T	p.Gly1401Val	p.G1401V	ENST00000373198	NM_133170.3	1401	gGa/gTa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056425	26056427	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-	rs774779034		P-0016542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	80	212	0	ENST00000343677.2:c.230_232del	p.Asn77del	p.N77del	ENST00000343677	NM_005319.3	77	aACAgc/agc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729974	30729974	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	263	378	0	ENST00000359013.4:c.1570G>T	p.Glu524Ter	p.E524*	ENST00000359013	NM_001024847.2	524	Gaa/Taa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435612	110435612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	189	385	0	ENST00000375856.3:c.2789G>A	p.Arg930His	p.R930H	ENST00000375856	NM_003749.2	930	cGc/cAc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575551	64575551	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	300	399	0	ENST00000337652.1:c.481G>C	p.Gly161Arg	p.G161R	ENST00000337652	NM_130803.2	161	Ggt/Cgt																																																																															
CBL	867	MSKCC	GRCh37	11	119156266	119156266	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	246	341	0	ENST00000264033.4:c.1931A>G	p.Asp644Gly	p.D644G	ENST00000264033	NM_005188.3	644	gAt/gGt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859410	57859410	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	232	325	0	ENST00000228682.2:c.555G>T	p.Met185Ile	p.M185I	ENST00000228682	NM_005269.2	185	atG/atT																																																																															
CDK8	1024	MSKCC	GRCh37	13	26927976	26927976	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	181	422	0	ENST00000381527.3:c.415A>T	p.Ile139Phe	p.I139F	ENST00000381527	NM_001260.1	139	Att/Ttt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560341	95560341	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	250	356	0	ENST00000343455.3:c.5248G>C	p.Val1750Leu	p.V1750L	ENST00000343455	NM_177438.2	1750	Gta/Cta																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857977	9857977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	128	417	0	ENST00000330684.3:c.3424C>T	p.Pro1142Ser	p.P1142S	ENST00000330684	NM_001134407.1	1142	Ccc/Tcc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119918	70119918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	163	394	0	ENST00000245479.2:c.920C>T	p.Pro307Leu	p.P307L	ENST00000245479	NM_000346.3	307	cCg/cTg																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872759	136872759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	75	257	1	ENST00000241393.3:c.739G>A	p.Ala247Thr	p.A247T	ENST00000241393	NM_003467.2	247	Gct/Act																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620643	52620643	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	267	430	0	ENST00000394830.3:c.3110G>C	p.Arg1037Pro	p.R1037P	ENST00000394830	NM_018313.4	1037	cGg/cCg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672730	86672730	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	158	315	0	ENST00000274376.6:c.2217T>A	p.Tyr739Ter	p.Y739*	ENST00000274376	NM_002890.2	739	taT/taA																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043391	180043391	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	134	518	0	ENST00000261937.6:c.3195C>A	p.Asp1065Glu	p.D1065E	ENST00000261937	NM_182925.4	1065	gaC/gaA																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965698	93965698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	204	401	0	ENST00000369303.4:c.2230G>T	p.Ala744Ser	p.A744S	ENST00000369303	NM_004440.3	744	Gct/Tct																																																																															
FYN	2534	MSKCC	GRCh37	6	112041061	112041061	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	228	335	0	ENST00000368678.4:c.194G>T	p.Gly65Val	p.G65V	ENST00000368678		65	gGa/gTa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981936	70981937	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0016542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	303	508	2	ENST00000276594.2:c.159_160delinsAA	p.Phe53Leu	p.F53L	ENST00000276594	NM_024504.3	53	ttCCgg/ttAAgg																																																																															
MYC	4609	MSKCC	GRCh37	8	128750831	128750831	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	628	469	0	ENST00000377970.2:c.368G>T	p.Gly123Val	p.G123V	ENST00000377970	NM_002467.4	123	gGa/gTa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738762	145738762	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0016542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	861	585	0	ENST00000428558.2:c.2302G>T	p.Val768Leu	p.V768L	ENST00000428558	NM_004260.3	768	Gtg/Ttg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30105630	30105631	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	454	657	1	ENST00000331968.5:c.1055_1056delinsAA	p.Arg352Lys	p.R352K	ENST00000331968	NM_002742.2	352	aGG/aAA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	280	310	0	ENST00000250448.2:c.798C>G	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttG																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	428	541	2	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	366	473	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618629	37618629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1279	433	533	0	ENST00000447079.4:c.305C>T	p.Ser102Leu	p.S102L	ENST00000447079	NM_015083.1	102	tCa/tTa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618658	37618658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1430	445	579	1	ENST00000447079.4:c.334C>T	p.Arg112Cys	p.R112C	ENST00000447079	NM_015083.1	112	Cgt/Tgt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619145	37619145	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1197	397	461	0	ENST00000447079.4:c.821C>G	p.Ser274Trp	p.S274W	ENST00000447079	NM_015083.1	274	tCg/tGg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	963	563	2	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40379633	40379633	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	375	515	0	ENST00000293328.3:c.199G>C	p.Glu67Gln	p.E67Q	ENST00000293328	NM_012448.3	67	Gag/Cag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10264986	10264986	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	241	300	0	ENST00000340748.4:c.1954C>T	p.Arg652Ter	p.R652*	ENST00000340748		652	Cga/Tga																																																																															
AKT2	208	MSKCC	GRCh37	19	40748577	40748577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1321	88	430	0	ENST00000392038.2:c.305C>A	p.Ala102Asp	p.A102D	ENST00000392038	NM_001626.4	102	gCc/gAc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37081709	37081709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	403	546	0	ENST00000231790.2:c.1591G>A	p.Val531Met	p.V531M	ENST00000231790	NM_000249.3	531	Gtg/Atg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538311	187538311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	380	550	0	ENST00000441802.2:c.8923G>A	p.Glu2975Lys	p.E2975K	ENST00000441802	NM_005245.3	2975	Gaa/Aaa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31410981	31410981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	434	528	0	ENST00000344624.3:c.3539C>G	p.Ser1180Cys	p.S1180C	ENST00000344624		1180	tCt/tGt																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803122	32803122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	371	380	3	ENST00000374899.4:c.754C>T	p.Arg252Trp	p.R252W	ENST00000374899	NM_018833.2	252	Cgg/Tgg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106522604	106522604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	274	390	0	ENST00000359195.3:c.2581G>A	p.Asp861Asn	p.D861N	ENST00000359195	NM_002649.2	861	Gat/Aat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	89	277	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1389	188	515	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
ATM	472	MSKCC	GRCh37	11	108235837	108235837	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	203	312	0	ENST00000278616.4:c.8879G>T	p.Trp2960Leu	p.W2960L	ENST00000278616	NM_000051.3	2960	tGg/tTg																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112769514	112769514	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1404	80	565	0	ENST00000369452.4:c.1466G>T	p.Gly489Val	p.G489V	ENST00000369452	NM_007373.3	489	gGc/gTc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18466960	18466960	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1179	146	439	0	ENST00000266497.5:c.1099C>T	p.Gln367Ter	p.Q367*	ENST00000266497		367	Cag/Tag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30093386	30093386	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1329	80	483	0	ENST00000331968.5:c.1877A>T	p.Gln626Leu	p.Q626L	ENST00000331968	NM_002742.2	626	cAg/cTg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39584366	39584366	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	78	268	0	ENST00000262039.4:c.1031A>T	p.Glu344Val	p.E344V	ENST00000262039	NM_002647.2	344	gAg/gTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945794	17945794	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	86	408	0	ENST00000458235.1:c.2066C>A	p.Pro689His	p.P689H	ENST00000458235	NM_000215.3	689	cCc/cAc																																																																															
KDR	3791	MSKCC	GRCh37	4	55955857	55955857	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	125	402	0	ENST00000263923.4:c.3304+1G>T		p.X1102_splice	ENST00000263923	NM_002253.2	1102																																																																																
EZH2	2146	MSKCC	GRCh37	7	148508754	148508754	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	100	353	0	ENST00000320356.2:c.1910T>G	p.Val637Gly	p.V637G	ENST00000320356	NM_004456.4	637	gTg/gGg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44920609	44920609	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1348	181	425	0	ENST00000377967.4:c.1370A>T	p.His457Leu	p.H457L	ENST00000377967	NM_021140.2	457	cAt/cTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039817	47039817	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1196	170	575	0	ENST00000329236.7:c.927-1G>T		p.X309_splice	ENST00000329236	NM_001204466.1	309																																																																																
PNRC1	10957	MSKCC	GRCh37	6	89791110	89791111	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	45	112	0	ENST00000336032.3:c.497_498delinsT	p.Pro166LeufsTer17	p.P166Lfs*17	ENST00000336032	NM_006813.2	166	cCG/cT																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	338	530	1	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214891	36214891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201094135		P-0016545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	395	574	1	ENST00000222270.7:c.3317G>A	p.Arg1106Gln	p.R1106Q	ENST00000222270	NM_014727.1	1106	cGg/cAg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880219	37880220	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC			P-0016547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	71	671	0	ENST00000269571.5:c.2263_2264delTTinsCC	p.Leu755Pro	p.L755P	ENST00000269571		755	TTg/CCg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56174838	56174848	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGCCACAGT	CTTGCCACAGT	-			P-0016547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	52	401	0	ENST00000399503.3:c.1997_2007del	p.Pro666LeufsTer27	p.P666Lfs*27	ENST00000399503	NM_005921.1	666	cCTTGCCACAGT/c																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183324	56183340	+	frameshift_variant	Frame_Shift_Del	DEL	ACAATTGCATTTATGGC	ACAATTGCATTTATGGC	-			P-0016547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	50	398	0	ENST00000399503.3:c.4236_4252del	p.Ile1413Ter	p.I1413*	ENST00000399503	NM_005921.1	1412	ACAATTGCATTTATGGCa/a																																																																															
ATRX	546	MSKCC	GRCh37	X	76920167	76920167	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	29	569	0	ENST00000373344.5:c.3910G>T	p.Gly1304Ter	p.G1304*	ENST00000373344	NM_000489.3	1304	Gga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	162	307	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591285	67591285	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	151	346	0	ENST00000274335.5:c.1784del	p.Asn595ThrfsTer67	p.N595Tfs*67	ENST00000274335		595	Aac/ac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0016549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	613	513	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40498589	40498589	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0016549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	175	311	0	ENST00000264657.5:c.271C>T	p.Gln91Ter	p.Q91*	ENST00000264657	NM_139276.2	91	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088759	27088759	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	481	574	1	ENST00000324856.7:c.2368C>T	p.Gln790Ter	p.Q790*	ENST00000324856	NM_006015.4	790	Cag/Tag																																																																															
JAK1	3716	MSKCC	GRCh37	1	65305323	65305323	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	326	606	0	ENST00000342505.4:c.2805G>C	p.Glu935Asp	p.E935D	ENST00000342505	NM_002227.2	935	gaG/gaC																																																																															
PALB2	79728	MSKCC	GRCh37	16	23614833	23614833	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200283306		P-0016549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	301	630	0	ENST00000261584.4:c.3508C>T	p.His1170Tyr	p.H1170Y	ENST00000261584	NM_024675.3	1170	Cat/Tat																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141479	11141479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	237	512	1	ENST00000344626.4:c.3456C>A	p.Phe1152Leu	p.F1152L	ENST00000344626	NM_003072.3	1152	ttC/ttA																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0016550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	285	576	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	109	427	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0016550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	439	641	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562729	21562729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	792	465	0	ENST00000382592.4:c.1190G>A	p.Arg397Gln	p.R397Q	ENST00000382592	NM_014572.2	397	cGg/cAg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17117112	17117112	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	179	557	0	ENST00000285071.4:c.1597C>T	p.Gln533Ter	p.Q533*	ENST00000285071	NM_144997.5	533	Cag/Tag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043992	180043992	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0016550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	147	443	0	ENST00000261937.6:c.3004G>T	p.Glu1002Ter	p.E1002*	ENST00000261937	NM_182925.4	1002	Gag/Tag																																																																															
STAG2	10735	MSKCC	GRCh37	X	123184140	123184140	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	103	363	0	ENST00000218089.9:c.998G>C	p.Gly333Ala	p.G333A	ENST00000218089	NM_001042749.1	333	gGt/gCt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	191	405	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0016551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	30	374	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937623	32937623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	235	401	0	ENST00000380152.3:c.8284C>T	p.Pro2762Ser	p.P2762S	ENST00000380152		2762	Cct/Tct																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463245	25463245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	228	401	0	ENST00000264709.3:c.2248C>T	p.Pro750Ser	p.P750S	ENST00000264709	NM_175629.2	750	Ccc/Tcc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934239	39934240	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0016551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	481	477	0	ENST00000378444.4:c.359_360del	p.Pro120ArgfsTer65	p.P120Rfs*65	ENST00000378444	NM_001123385.1	120	cCA/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0016552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	203	388	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	70	277	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39567846	39567846	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	66	289	1	ENST00000262039.4:c.602T>A	p.Ile201Lys	p.I201K	ENST00000262039	NM_002647.2	201	aTa/aAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	208	421	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0016560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	228	403	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112173730	112173730	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	138	338	0	ENST00000257430.4:c.2442del	p.Phe814LeufsTer6	p.F814Lfs*6	ENST00000257430	NM_000038.5	813	aaT/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435316	49435316	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0016560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	113	381	0	ENST00000301067.7:c.6237G>T	p.Gln2079His	p.Q2079H	ENST00000301067	NM_003482.3	2079	caG/caT																																																																															
B2M	567	MSKCC	GRCh37	15	45003805	45003805	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	140	261	0	ENST00000558401.1:c.61A>G	p.Ile21Val	p.I21V	ENST00000558401	NM_004048.2	21	Atc/Gtc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478789	56478789	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	294	469	0	ENST00000267101.3:c.245A>T	p.Glu82Val	p.E82V	ENST00000267101	NM_001982.3	82	gAa/gTa																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804342	46804342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	232	399	0	ENST00000290295.7:c.665C>T	p.Pro222Leu	p.P222L	ENST00000290295	NM_006361.5	222	cCg/cTg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485822	57485822	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	282	428	0	ENST00000371085.3:c.1123G>C	p.Val375Leu	p.V375L	ENST00000371085	NM_000516.4	375	Gtg/Ctg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87339179	87339193	+	inframe_deletion	In_Frame_Del	DEL	ACATTTCATCCGATG	ACATTTCATCCGATG	-			P-0016564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	211	606	0	ENST00000277120.3:c.764_778del	p.Ile255_Asp259del	p.I255_D259del	ENST00000277120		254	aACATTTCATCCGATGac/aac																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410600	63410600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	269	595	1	ENST00000330258.3:c.2567G>A	p.Ser856Asn	p.S856N	ENST00000330258	NM_152424.3	856	aGt/aAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0016565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	315	499	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0016565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	179	384	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	317	332	0	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
MGA	23269	MSKCC	GRCh37	15	42052636	42052636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	211	370	0	ENST00000219905.7:c.7307G>A	p.Arg2436His	p.R2436H	ENST00000219905	NM_001164273.1	2436	cGt/cAt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258311	16258311	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	199	476	0	ENST00000375759.3:c.5576G>T	p.Arg1859Leu	p.R1859L	ENST00000375759	NM_015001.2	1859	cGg/cTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041728	29041728	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	122	369	0	ENST00000282397.4:c.91G>C	p.Asp31His	p.D31H	ENST00000282397	NM_002019.4	31	Gat/Cat																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30293216	30293216	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0016565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	111	353	0	ENST00000322652.5:c.505+1G>T		p.X169_splice	ENST00000322652	NM_015355.2	169																																																																																
APC	324	MSKCC	GRCh37	5	112173260	112173261	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0016565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	98	238	0	ENST00000257430.4:c.1974_1975del	p.Asn659GlnfsTer14	p.N659Qfs*14	ENST00000257430	NM_000038.5	657	AGa/a																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178152	56178152	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	234	392	0	ENST00000399503.3:c.3127del	p.Ser1043ProfsTer39	p.S1043Pfs*39	ENST00000399503	NM_005921.1	1042	cTt/ct																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0016571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	223	343	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TET2	54790	MSKCC	GRCh37	4	106182989	106182989	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	240	365	0	ENST00000380013.4:c.4028A>G	p.Asp1343Gly	p.D1343G	ENST00000380013	NM_001127208.2	1343	gAt/gGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447803	49447804	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	AA			P-0016571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	118	406	1	ENST00000301067.7:c.630_631delinsTT	p.Gln211Ter	p.Q211*	ENST00000301067	NM_003482.3	210	ctGCag/ctTTag																																																																															
CBFB	865	MSKCC	GRCh37	16	67070564	67070564	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	258	258	0	ENST00000412916.2:c.188A>G	p.Asn63Ser	p.N63S	ENST00000412916		63	aAt/aGt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36253009	36253013	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCTA	ACCTA	-			P-0016571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	317	432	0	ENST00000300305.3:c.352-3_353del		p.X118_splice	ENST00000300305		118																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151859638	151859638	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	131	247	0	ENST00000262189.6:c.11024del	p.Gln3675ArgfsTer6	p.Q3675Rfs*6	ENST00000262189	NM_170606.2	3675	cAg/cg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877860	151877878	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGTTGGCACAGGTCCAG	GAAGTTGGCACAGGTCCAG	-			P-0016571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	197	255	0	ENST00000262189.6:c.7067_7085del	p.Pro2356GlnfsTer3	p.P2356Qfs*3	ENST00000262189	NM_170606.2	2356	cCTGGACCTGTGCCAACTTCa/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	480	369	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	215	361	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
ATM	472	MSKCC	GRCh37	11	108163500	108163500	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	224	249	0	ENST00000278616.4:c.4591C>T	p.Gln1531Ter	p.Q1531*	ENST00000278616	NM_000051.3	1531	Cag/Tag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16021243	16021243	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	100	167	0	ENST00000268712.3:c.2014C>T	p.Arg672Ter	p.R672*	ENST00000268712	NM_006311.3	672	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120124	70120124	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	75	72	0	ENST00000245479.2:c.1126C>T	p.Gln376Ter	p.Q376*	ENST00000245479	NM_000346.3	376	Cag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153253844	153253844	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	158	230	0	ENST00000281708.4:c.889G>T	p.Glu297Ter	p.E297*	ENST00000281708	NM_033632.3	297	Gaa/Taa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485285	8485285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	95	383	0	ENST00000356435.5:c.3095C>T	p.Thr1032Ile	p.T1032I	ENST00000356435		1032	aCt/aTt																																																																															
APC	324	MSKCC	GRCh37	5	112175556	112175575	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTTCCAGATAGCCCTGGA	ATCTTCCAGATAGCCCTGGA	G			P-0016573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	78	229	0	ENST00000257430.4:c.4265_4284delinsG	p.Asp1422GlyfsTer45	p.D1422Gfs*45	ENST00000257430	NM_000038.5	1422	gATCTTCCAGATAGCCCTGGA/gG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	366	496	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0016577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	352	405	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52723453	52723453	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	52	336	0	ENST00000322088.6:c.1314C>A	p.Phe438Leu	p.F438L	ENST00000322088	NM_014225.5	438	ttC/ttA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	267	490	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0016579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	297	457	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028632	12028632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	166	335	0	ENST00000353533.5:c.835G>A	p.Ala279Thr	p.A279T	ENST00000353533	NM_003010.3	279	Gca/Aca																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806657	1806657	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	134	439	0	ENST00000260795.2:c.1373A>T	p.Glu458Val	p.E458V	ENST00000260795		458	gAg/gTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974713	21974714	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	193	257	0	ENST00000304494.5:c.113_114insG	p.Asn39GlnfsTer5	p.N39Qfs*5	ENST00000304494	NM_000077.4	38	ccc/ccGc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964467	70964467	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	120	399	0	ENST00000276594.2:c.1561T>C	p.Tyr521His	p.Y521H	ENST00000276594	NM_024504.3	521	Tac/Cac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685307	89685307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	162	396	0	ENST00000371953.3:c.202T>C	p.Tyr68His	p.Y68H	ENST00000371953	NM_000314.4	68	Tac/Cac																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913476		P-0016581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	261	500	1	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820744	3820744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	310	516	0	ENST00000262367.5:c.2707C>T	p.Pro903Ser	p.P903S	ENST00000262367	NM_004380.2	903	Cct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0016581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	397	384	0	ENST00000269305.4:c.993+2T>G		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67588972	67588985	+	frameshift_variant	Frame_Shift_Del	DEL	TTTTTGGTACGAGA	TTTTTGGTACGAGA	AAAAAGC			P-0016581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	79	233	1	ENST00000274335.5:c.1063_1076delinsAAAAAGC	p.Phe355LysfsTer16	p.F355Kfs*16	ENST00000274335		355	TTTTTGGTACGAGAt/AAAAAGCt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152415703	152415703	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0016581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	176	316	0	ENST00000206249.3:c.1553G>C	p.Ser518Thr	p.S518T	ENST00000206249	NM_000125.3	518	aGt/aCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0016583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	183	546	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	194	527	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RHOA	387	MSKCC	GRCh37	3	49405948	49405948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	217	681	0	ENST00000418115.1:c.190G>A	p.Glu64Lys	p.E64K	ENST00000418115	NM_001664.2	64	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105646	27105647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTC			P-0016583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	93	327	0	ENST00000324856.7:c.5259_5262dup	p.Ser1755ValfsTer2	p.S1755Vfs*2	ENST00000324856	NM_006015.4	1753	gtg/gTGTCtg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999574	100999574	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1192	213	667	1	ENST00000325455.5:c.228C>A	p.Asp76Glu	p.D76E	ENST00000325455	NM_001202474.3	76	gaC/gaA																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131343	17131343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1179	193	525	0	ENST00000285071.4:c.109G>A	p.Asp37Asn	p.D37N	ENST00000285071	NM_144997.5	37	Gac/Aac																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469546	25469546	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	91	582	1	ENST00000264709.3:c.1222G>T	p.Glu408Ter	p.E408*	ENST00000264709	NM_175629.2	408	Gaa/Taa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131350	17131358	+	missense_variant	Missense_Mutation	ONP	CCCATCCCC	CCCATCCCC	TCCATTCCT			P-0016583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	154	496	0	ENST00000285071.4:c.94_102delinsAGGAATGGA	p.Gly32_Asp33delinsArgAsn	p.G32_D33delinsRN	ENST00000285071	NM_144997.5	32	GGGGATGGG/AGGAATGGA																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0016584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	63	365	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	215	429	1	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0016584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	539	455	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577492	64577493	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0016585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	353	473	0	ENST00000337652.1:c.89_90insC	p.Glu30AspfsTer87	p.E30Dfs*87	ENST00000337652	NM_130803.2	30	gag/gaCg																																																																															
POLE	5426	MSKCC	GRCh37	12	133218351	133218351	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	463	513	0	ENST00000320574.5:c.5260A>G	p.Met1754Val	p.M1754V	ENST00000320574	NM_006231.2	1754	Atg/Gtg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2104350	2104350	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	562	634	0	ENST00000219476.3:c.390C>A	p.Tyr130Ter	p.Y130*	ENST00000219476	NM_000548.3	130	taC/taA																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287946	33287949	+	frameshift_variant	Frame_Shift_Del	DEL	TCTG	TCTG	-			P-0016585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	409	397	0	ENST00000374542.5:c.1304_1307del	p.Thr435MetfsTer92	p.T435Mfs*92	ENST00000374542	NM_001141970.1	435	aCAGAt/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0016593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1176	210	730	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922292	178922293	+	inframe_insertion,splice_region_variant	In_Frame_Ins	INS	-	-	CTATGTTCGAACAGGTATCTACCATGG			P-0016593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	70	366	0	ENST00000263967.3:c.1062_1088dup	p.Tyr355_Gly363dup	p.Y355_G363dup	ENST00000263967	NM_006218.2	355	atc/atCTATGTTCGAACAGGTATCTACCATGGc																																																																															
TET2	54790	MSKCC	GRCh37	4	106196544	106196544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	83	310	0	ENST00000380013.4:c.4877C>T	p.Thr1626Ile	p.T1626I	ENST00000380013	NM_001127208.2	1626	aCc/aTc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267369	198267369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	43	476	1	ENST00000335508.6:c.1988C>T	p.Thr663Ile	p.T663I	ENST00000335508	NM_012433.2	663	aCt/aTt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120672	115120672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	84	678	1	ENST00000257566.3:c.334C>T	p.Leu112Phe	p.L112F	ENST00000257566	NM_016569.3	112	Ctt/Ttt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851591	134851591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	38	422	0	ENST00000398015.3:c.997G>A	p.Val333Ile	p.V333I	ENST00000398015	NM_004441.4	333	Gtc/Atc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	106	582	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0016603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	74	373	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	71	418	0	ENST00000257430.4:c.4364delA	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0016603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	209	572	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225264		P-0016603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	33	352	1	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781321	3781321	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200112956		P-0016603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	166	684	1	ENST00000262367.5:c.5044C>T	p.Arg1682Cys	p.R1682C	ENST00000262367	NM_004380.2	1682	Cgc/Tgc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871800	12871800	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	43	346	1	ENST00000228872.4:c.517A>G	p.Asn173Asp	p.N173D	ENST00000228872	NM_004064.3	173	Aat/Gat																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713750	30713750	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	36	388	0	ENST00000359013.4:c.1150G>C	p.Ala384Pro	p.A384P	ENST00000359013	NM_001024847.2	384	Gct/Cct																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836855	151836855	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	117	568	1	ENST00000262189.6:c.14365C>T	p.Arg4789Ter	p.R4789*	ENST00000262189	NM_170606.2	4789	Cga/Tga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	65	498	0	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913273		P-0016604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	16	469	0	ENST00000263967.3:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000263967	NM_006218.2	542	Gaa/Caa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563266	21563266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	86	629	2	ENST00000382592.4:c.653G>A	p.Gly218Glu	p.G218E	ENST00000382592	NM_014572.2	218	gGa/gAa																																																																															
STK19	8859	MSKCC	GRCh37	6	31939941	31939941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	86	408	1	ENST00000375331.2:c.168G>T	p.Trp56Cys	p.W56C	ENST00000375331	NM_004197.1	56	tgG/tgT																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87563501	87563501	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	58	460	0	ENST00000277120.3:c.1889T>C	p.Ile630Thr	p.I630T	ENST00000277120		630	aTc/aCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0016606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	387	505	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730916	40730916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1300	254	336	0	ENST00000373198.4:c.3619C>T	p.Arg1207Cys	p.R1207C	ENST00000373198	NM_133170.3	1207	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	58	294	0	ENST00000257430.4:c.2805C>G	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taG																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9778896	9778896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	207	376	1	ENST00000377346.4:c.1165C>T	p.Arg389Cys	p.R389C	ENST00000377346	NM_005026.3	389	Cgt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431915	49431915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	208	556	0	ENST00000301067.7:c.9224C>T	p.Ser3075Leu	p.S3075L	ENST00000301067	NM_003482.3	3075	tCg/tTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42058858	42058858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	83	233	0	ENST00000219905.7:c.8578C>T	p.Arg2860Trp	p.R2860W	ENST00000219905	NM_001164273.1	2860	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112103015	112103015	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	156	340	0	ENST00000257430.4:c.350C>A	p.Ser117Ter	p.S117*	ENST00000257430	NM_000038.5	117	tCa/tAa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0016608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	252	638	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624264	89624267	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0016608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	192	277	0	ENST00000371953.3:c.38_41del	p.Lys13ArgfsTer10	p.K13Rfs*10	ENST00000371953	NM_000314.4	13	aAAAGg/ag																																																																															
MET	4233	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	T			P-0016611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	316	603	0	ENST00000397752.3:c.3028+3A>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0016612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	679	754	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434074	49434074	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	203	446	1	ENST00000301067.7:c.7479del	p.Phe2494SerfsTer49	p.F2494Sfs*49	ENST00000301067	NM_003482.3	2493	ggG/gg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610144	10610144	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	572	550	0	ENST00000171111.5:c.566A>T	p.Asn189Ile	p.N189I	ENST00000171111	NM_203500.1	189	aAc/aTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141453	11141453	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	560	575	0	ENST00000344626.4:c.3430G>T	p.Glu1144Ter	p.E1144*	ENST00000344626	NM_003072.3	1144	Gag/Tag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299859	15299859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	584	638	0	ENST00000263388.2:c.1319G>T	p.Cys440Phe	p.C440F	ENST00000263388	NM_000435.2	440	tGc/tTc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463172	25463172	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0016612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	352	485	0	ENST00000264709.3:c.2321A>T	p.Glu774Val	p.E774V	ENST00000264709	NM_175629.2	774	gAg/gTg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225449673	225449682	+	frameshift_variant	Frame_Shift_Del	DEL	GATCCGCATC	GATCCGCATC	-			P-0016612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	221	353	0	ENST00000264414.4:c.45_54del	p.Lys15AsnfsTer6	p.K15Nfs*6	ENST00000264414	NM_003590.4	15	aaGATGCGGATC/aa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249463	153249463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	533	545	0	ENST00000281708.4:c.1315A>G	p.Thr439Ala	p.T439A	ENST00000281708	NM_033632.3	439	Aca/Gca																																																																															
MET	4233	MSKCC	GRCh37	7	116340250	116340250	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	199	371	0	ENST00000397752.3:c.1112A>C	p.Asn371Thr	p.N371T	ENST00000397752	NM_000245.2	371	aAc/aCc																																																																															
MET	4233	MSKCC	GRCh37	7	116340288	116340288	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	375	365	0	ENST00000397752.3:c.1150A>T	p.Arg384Ter	p.R384*	ENST00000397752	NM_000245.2	384	Aga/Tga																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412655	139412655	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	227	583	0	ENST00000277541.6:c.1189A>G	p.Ile397Val	p.I397V	ENST00000277541	NM_017617.3	397	Atc/Gtc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853332	151853332	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	GCA			P-0016612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	367	428	0	ENST00000262189.6:c.11770delinsTGC	p.Glu3924CysfsTer11	p.E3924Cfs*11	ENST00000262189	NM_170606.2	3924	Gaa/TGCaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	739	434	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	168	610	2	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030325	180030325	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115824945		P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	140	522	0	ENST00000261937.6:c.3959G>A	p.Arg1320Gln	p.R1320Q	ENST00000261937	NM_182925.4	1320	cGg/cAg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838410	156838410	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	105	482	0	ENST00000524377.1:c.688A>T	p.Thr230Ser	p.T230S	ENST00000524377	NM_002529.3	230	Aca/Tca																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741541	17741541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	134	391	0	ENST00000250003.3:c.212C>A	p.Pro71Gln	p.P71Q	ENST00000250003	NM_002478.4	71	cCg/cAg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39222294	39222294	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	121	452	0	ENST00000402219.2:c.3316G>C	p.Asp1106His	p.D1106H	ENST00000402219	NM_005633.3	1106	Gat/Cat																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40710652	40710652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	98	418	0	ENST00000373198.4:c.4199G>T	p.Gly1400Val	p.G1400V	ENST00000373198	NM_133170.3	1400	gGg/gTg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49932677	49932677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	98	621	0	ENST00000296474.3:c.3194C>T	p.Ala1065Val	p.A1065V	ENST00000296474	NM_002447.2	1065	gCg/gTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873119	134873119	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	48	427	0	ENST00000398015.3:c.1422+1G>T		p.X474_splice	ENST00000398015	NM_004441.4	474																																																																																
CSF1R	1436	MSKCC	GRCh37	5	149449459	149449459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	75	357	0	ENST00000286301.3:c.1487G>T	p.Trp496Leu	p.W496L	ENST00000286301	NM_005211.3	496	tGg/tTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55260504	55260504	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	849	454	0	ENST00000275493.2:c.2671T>G	p.Tyr891Asp	p.Y891D	ENST00000275493	NM_005228.3	891	Tat/Gat																																																																															
CDK6	1021	MSKCC	GRCh37	7	92355007	92355007	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	74	230	0	ENST00000265734.4:c.470G>T	p.Gly157Val	p.G157V	ENST00000265734	NM_001259.6	157	gGa/gTa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933860	39933860	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	32	470	0	ENST00000378444.4:c.739del	p.Leu247CysfsTer19	p.L247Cfs*19	ENST00000378444	NM_001123385.1	247	Ctg/tg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044472	47044472	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	145	643	1	ENST00000329236.7:c.1735C>A	p.Arg579Ser	p.R579S	ENST00000329236	NM_001204466.1	579	Cgc/Agc																																																																															
ATRX	546	MSKCC	GRCh37	X	76764003	76764003	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	111	546	2	ENST00000373344.5:c.7305C>A	p.His2435Gln	p.H2435Q	ENST00000373344	NM_000489.3	2435	caC/caA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	96	520	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220414	1220414	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	151	518	0	ENST00000326873.7:c.508del	p.Gln170ArgfsTer117	p.Q170Rfs*117	ENST00000326873	NM_000455.4	169	agC/ag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610511	10610511	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	115	371	0	ENST00000171111.5:c.199A>G	p.Met67Val	p.M67V	ENST00000171111	NM_203500.1	67	Atg/Gtg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132527	11132527	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	146	475	3	ENST00000344626.4:c.2743C>T	p.Gln915Ter	p.Q915*	ENST00000344626	NM_003072.3	915	Cag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141514	11141514	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	111	494	0	ENST00000344626.4:c.3491A>G	p.Asn1164Ser	p.N1164S	ENST00000344626	NM_003072.3	1164	aAc/aGc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911534	101911534	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111426349		P-0016614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	108	411	1	ENST00000374994.4:c.1459C>T	p.Arg487Trp	p.R487W	ENST00000374994	NM_004612.2	487	Cgg/Tgg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028895	47028895	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0016614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	80	287	0	ENST00000329236.7:c.199G>T	p.Glu67Ter	p.E67*	ENST00000329236	NM_001204466.1	67	Gag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030516	47030517	+	intron_variant	Intron	INS	-	-	CG			P-0016614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	142	525	0	ENST00000329236.7:c.201+1620_201+1621dup		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
GATA1	2623	MSKCC	GRCh37	X	48651652	48651652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	195	604	0	ENST00000376670.3:c.818C>A	p.Ala273Asp	p.A273D	ENST00000376670	NM_002049.3	273	gCc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	11	457	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860891	151860894	+	frameshift_variant	Frame_Shift_Del	DEL	TTCT	TTCT	-			P-0016617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	151	279	0	ENST00000262189.6:c.9768_9771del	p.Lys3256AsnfsTer5	p.K3256Nfs*5	ENST00000262189	NM_170606.2	3256	aaAGAA/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0016620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	79	331	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692830	89692830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	58	227	0	ENST00000371953.3:c.314G>T	p.Cys105Phe	p.C105F	ENST00000371953	NM_000314.4	105	tGt/tTt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209504	98209504	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766315655		P-0016625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	93	353	1	ENST00000331920.6:c.4034G>A	p.Arg1345His	p.R1345H	ENST00000331920	NM_000264.3	1345	cGt/cAt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096052	11096052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1239	115	925	1	ENST00000344626.4:c.326C>T	p.Pro109Leu	p.P109L	ENST00000344626	NM_003072.3	109	cCg/cTg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42861337	42861455	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCCTCCAGAGGTCTCAATAGCCCAGAGAGCAGGGTCTGGCTCAGAGCACTGGGGACTGCAGGAGCACATGGTGGGATCGAGGCTCCCTGCACTTACTGAACTTCCAGAGTAGGCCAGC	GGCCTCCAGAGGTCTCAATAGCCCAGAGAGCAGGGTCTGGCTCAGAGCACTGGGGACTGCAGGAGCACATGGTGGGATCGAGGCTCCCTGCACTTACTGAACTTCCAGAGTAGGCCAGC	-			P-0016625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	12	72	0	ENST00000398585.3:c.415_436+97del		p.X139_splice	ENST00000398585	NM_001135099.1	139																																																																																
HIST1H3G	8355	MSKCC	GRCh37	6	26271490	26271492	+	missense_variant	Missense_Mutation	ONP	GCG	GCG	CGA			P-0016625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	40	227	0	ENST00000305910.3:c.121_123delinsTCG	p.Arg41Ser	p.R41S	ENST00000305910	NM_003534.2	41	CGC/TCG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0016632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	232	475	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62321690	62321690	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	T			P-0016632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	118	479	1	ENST00000482936.1:c.2309G>T	p.Gly770Val	p.G770V	ENST00000482936		770	gGa/gTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449764	8449764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	258	420	0	ENST00000356435.5:c.3949G>T	p.Asp1317Tyr	p.D1317Y	ENST00000356435		1317	Gac/Tac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	183	402	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67198888	67198888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	181	442	0	ENST00000312629.5:c.359G>A	p.Arg120Gln	p.R120Q	ENST00000312629	NM_003952.2	120	cGg/cAg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12043203	12043203	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0016636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	140	290	0	ENST00000353533.5:c.1086+2T>C		p.X362_splice	ENST00000353533	NM_003010.3	362																																																																																
NCOR1	9611	MSKCC	GRCh37	17	16046917	16046917	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	A			P-0016636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	160	345	0	ENST00000268712.3:c.1173+3A>T		p.X391_splice	ENST00000268712	NM_006311.3	391																																																																																
ALK	238	MSKCC	GRCh37	2	29498333	29498333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	104	528	0	ENST00000389048.3:c.1847G>T	p.Gly616Val	p.G616V	ENST00000389048	NM_004304.4	616	gGa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579437	7579437	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	126	684	0	ENST00000269305.4:c.250del	p.Ala84ProfsTer39	p.A84Pfs*39	ENST00000269305	NM_001126112.2	84	Gcc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0016637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	210	930	2	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0016637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	202	810	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18691093	18691093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	138	440	0	ENST00000266497.5:c.3204C>A	p.Asp1068Glu	p.D1068E	ENST00000266497		1068	gaC/gaA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420273	49420273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	85	794	0	ENST00000301067.7:c.15476G>A	p.Arg5159Gln	p.R5159Q	ENST00000301067	NM_003482.3	5159	cGg/cAg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30320958	30320958	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1247	296	808	0	ENST00000322652.5:c.1368C>A	p.Asn456Lys	p.N456K	ENST00000322652	NM_015355.2	456	aaC/aaA																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687049	37687049	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs151051059		P-0016637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	64	582	0	ENST00000447079.4:c.3953A>G	p.His1318Arg	p.H1318R	ENST00000447079	NM_015083.1	1318	cAt/cGt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120373	70120373	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1648	259	1717	0	ENST00000245479.2:c.1375G>T	p.Gly459Cys	p.G459C	ENST00000245479	NM_000346.3	459	Ggc/Tgc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599929	10599931	+	inframe_deletion	In_Frame_Del	DEL	GGG	GGG	-			P-0016637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	277	935	0	ENST00000171111.5:c.1645_1647del	p.Pro549del	p.P549del	ENST00000171111	NM_203500.1	549	CCC/-																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509361	106509361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	228	592	0	ENST00000359195.3:c.1355C>A	p.Ser452Tyr	p.S452Y	ENST00000359195	NM_002649.2	452	tCt/tAt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411325	63411325	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	183	788	0	ENST00000330258.3:c.1842C>A	p.His614Gln	p.H614Q	ENST00000330258	NM_152424.3	614	caC/caA																																																																															
ATRX	546	MSKCC	GRCh37	X	76937930	76937930	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	215	692	0	ENST00000373344.5:c.2818G>T	p.Ala940Ser	p.A940S	ENST00000373344	NM_000489.3	940	Gct/Tct																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0016638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	364	348	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CBFB	865	MSKCC	GRCh37	16	67100585	67100585	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	289	200	0	ENST00000412916.2:c.283G>T	p.Val95Leu	p.V95L	ENST00000412916		95	Gta/Tta																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7980034	7980034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	440	412	0	ENST00000319144.4:c.1303G>A	p.Val435Ile	p.V435I	ENST00000319144	NM_001139.2	435	Gtc/Atc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0016638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	394	364	1	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
SPEN	23013	MSKCC	GRCh37	1	16256412	16256416	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0016638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	517	482	0	ENST00000375759.3:c.3682_3686del	p.Lys1228AspfsTer7	p.K1228Dfs*7	ENST00000375759	NM_015001.2	1226	aAAAAG/a																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261081	16261082	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	381	352	0	ENST00000375759.3:c.8347dup	p.Ser2783LysfsTer30	p.S2783Kfs*30	ENST00000375759	NM_015001.2	2782	-/A																																																																															
MPL	4352	MSKCC	GRCh37	1	43804287	43804287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	431	377	0	ENST00000372470.3:c.287C>T	p.Pro96Leu	p.P96L	ENST00000372470	NM_005373.2	96	cCa/cTa																																																																															
CDK8	1024	MSKCC	GRCh37	13	26959446	26959448	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0016638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	339	361	0	ENST00000381527.3:c.616_618del	p.Leu206del	p.L206del	ENST00000381527	NM_001260.1	205	CTT/-																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0016641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	301	572	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631839	90631839	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519906		P-0016641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	171	446	0	ENST00000330062.3:c.514A>T	p.Arg172Trp	p.R172W	ENST00000330062	NM_002168.2	172	Agg/Tgg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246170	46246170	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	156	351	0	ENST00000334344.6:c.4264A>C	p.Thr1422Pro	p.T1422P	ENST00000334344	NM_152641.2	1422	Act/Cct																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210659	2210659	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200547302		P-0016641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	308	746	0	ENST00000398665.3:c.1156G>A	p.Val386Met	p.V386M	ENST00000398665	NM_032482.2	386	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175842	112175842	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	98	259	0	ENST00000257430.4:c.4551del	p.Asp1519MetfsTer4	p.D1519Mfs*4	ENST00000257430	NM_000038.5	1517	caG/ca																																																																															
APC	324	MSKCC	GRCh37	5	112175865	112175896	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCTCCAGTTCAGGAAAATGACAATGGGAAT	TGCCTCCAGTTCAGGAAAATGACAATGGGAAT	-			P-0016641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	84	284	0	ENST00000257430.4:c.4574_4605del	p.Met1525ArgfsTer8	p.M1525Rfs*8	ENST00000257430	NM_000038.5	1525	aTGCCTCCAGTTCAGGAAAATGACAATGGGAAT/a																																																																															
EGFR	1956	MSKCC	GRCh37	7	55209982	55209982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	141	320	0	ENST00000275493.2:c.92G>A	p.Cys31Tyr	p.C31Y	ENST00000275493	NM_005228.3	31	tGc/tAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1417	426	500	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MST1	4485	MSKCC	GRCh37	3	49722761	49722761	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs62262682		P-0016642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	16	22	0	ENST00000449682.2:c.1478G>T	p.Arg493Leu	p.R493L	ENST00000449682	NM_020998.3	493	cGt/cTt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120471614	120471614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	145	260	0	ENST00000256646.2:c.3877C>T	p.Arg1293Cys	p.R1293C	ENST00000256646	NM_024408.3	1293	Cgt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108124621	108124621	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	278	422	0	ENST00000278616.4:c.1979T>C	p.Met660Thr	p.M660T	ENST00000278616	NM_000051.3	660	aTg/aCg																																																																															
ATM	472	MSKCC	GRCh37	11	108190718	108190718	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	283	532	0	ENST00000278616.4:c.6385T>A	p.Tyr2129Asn	p.Y2129N	ENST00000278616	NM_000051.3	2129	Tac/Aac																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554270	63554270	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	541	437	0	ENST00000307078.5:c.469A>G	p.Ile157Val	p.I157V	ENST00000307078	NM_004655.3	157	Ata/Gta																																																																															
STK11	6794	MSKCC	GRCh37	19	1221309	1221310	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0016642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	629	524	0	ENST00000326873.7:c.834_835delTG	p.Cys278TrpfsTer6	p.C278Wfs*6	ENST00000326873	NM_000455.4	278	TGt/t																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521667	89521667	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	268	416	0	ENST00000336596.2:c.2744C>A	p.Thr915Lys	p.T915K	ENST00000336596	NM_005233.5	915	aCa/aAa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63409851	63409851	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	136	240	0	ENST00000330258.3:c.3316A>G	p.Ser1106Gly	p.S1106G	ENST00000330258	NM_152424.3	1106	Agc/Ggc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546988	9546988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	187	169	0	ENST00000353224.5:c.1034C>T	p.Ser345Leu	p.S345L	ENST00000353224	NM_177990.2	345	tCa/tTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097608	27097608	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	634	526	0	ENST00000324856.7:c.3199-2A>T		p.X1067_splice	ENST00000324856	NM_006015.4	1067																																																																																
AKT3	10000	MSKCC	GRCh37	1	243736274	243736274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	567	487	0	ENST00000263826.5:c.773C>A	p.Ala258Asp	p.A258D	ENST00000263826	NM_005465.4	258	gCc/gAc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104268976	104268976	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	657	515	0	ENST00000369902.3:c.233G>T	p.Gly78Val	p.G78V	ENST00000369902	NM_016169.3	78	gGg/gTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42041308	42041308	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	425	385	0	ENST00000219905.7:c.5504-1G>T		p.X1835_splice	ENST00000219905	NM_001164273.1	1835																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3778017	3778017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1407	871	926	0	ENST00000262367.5:c.7031G>T	p.Arg2344Leu	p.R2344L	ENST00000262367	NM_004380.2	2344	cGg/cTg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50810138	50810138	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	551	526	0	ENST00000398568.2:c.962G>T	p.Arg321Ile	p.R321I	ENST00000398568	NM_001042412.1	321	aGa/aTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29528145	29528146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	710	640	0	ENST00000358273.4:c.1153_1154insT	p.Arg385LeufsTer11	p.R385Lfs*11	ENST00000358273	NM_001042492.2	385	cgt/cTgt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311601	15311601	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	259	67	0	ENST00000263388.2:c.116C>T	p.Ala39Val	p.A39V	ENST00000263388	NM_000435.2	39	gCa/gTa																																																																															
GATA2	2624	MSKCC	GRCh37	3	128199900	128199900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	270	180	0	ENST00000341105.2:c.1405C>A	p.His469Asn	p.H469N	ENST00000341105	NM_032638.4	469	Cac/Aac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356195	66356195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	507	386	0	ENST00000273854.3:c.1302C>A	p.His434Gln	p.H434Q	ENST00000273854	NM_004439.5	434	caC/caA																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564739	86564739	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	331	548	0	ENST00000274376.6:c.471C>G	p.Asp157Glu	p.D157E	ENST00000274376	NM_002890.2	157	gaC/gaG																																																																															
RASA1	5921	MSKCC	GRCh37	5	86676400	86676400	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	137	204	0	ENST00000274376.6:c.2678del	p.Thr893LysfsTer18	p.T893Kfs*18	ENST00000274376	NM_002890.2	893	aCa/aa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671684	30671684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	476	361	1	ENST00000376406.3:c.5276G>A	p.Gly1759Glu	p.G1759E	ENST00000376406	NM_014641.2	1759	gGa/gAa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967854	93967854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1169	302	550	0	ENST00000369303.4:c.2073C>A	p.His691Gln	p.H691Q	ENST00000369303	NM_004440.3	691	caC/caA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55224349	55224349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	595	348	0	ENST00000275493.2:c.1130G>T	p.Arg377Met	p.R377M	ENST00000275493	NM_005228.3	377	aGg/aTg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372332	55372332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2654	446	802	0	ENST00000297316.4:c.1022C>A	p.Pro341His	p.P341H	ENST00000297316	NM_022454.3	341	cCc/cAc																																																																															
NBN	4683	MSKCC	GRCh37	8	90970980	90970980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	651	231	0	ENST00000265433.3:c.1097A>G	p.Asp366Gly	p.D366G	ENST00000265433	NM_002485.4	366	gAc/gGc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635173	87635173	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	199	338	0	ENST00000277120.3:c.2225T>A	p.Met742Lys	p.M742K	ENST00000277120		742	aTg/aAg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250422	110250422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	603	560	0	ENST00000374672.4:c.253G>T	p.Gly85Cys	p.G85C	ENST00000374672	NM_004235.4	85	Ggt/Tgt																																																																															
ATRX	546	MSKCC	GRCh37	X	76938566	76938566	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	206	420	0	ENST00000373344.5:c.2182A>T	p.Asn728Tyr	p.N728Y	ENST00000373344	NM_000489.3	728	Aat/Tat																																																																															
CENPA	1058	MSKCC	GRCh37	2	27009101	27009102	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	286	258	0	ENST00000335756.4:c.37_38delinsT	p.Pro13Ter	p.P13*	ENST00000335756	NM_001809.3	13	CCg/Tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0016646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	25	476	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602757	10602757	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	352	795	0	ENST00000171111.5:c.821A>G	p.His274Arg	p.H274R	ENST00000171111	NM_203500.1	274	cAc/cGc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937145	36937145	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1155	92	604	0	ENST00000361632.4:c.1174G>C	p.Glu392Gln	p.E392Q	ENST00000361632		392	Gag/Cag																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36938243	36938243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	111	615	2	ENST00000361632.4:c.718G>A	p.Glu240Lys	p.E240K	ENST00000361632		240	Gaa/Aaa																																																																															
PGR	5241	MSKCC	GRCh37	11	100999787	100999787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	231	603	0	ENST00000325455.5:c.15G>T	p.Lys5Asn	p.K5N	ENST00000325455	NM_001202474.3	5	aaG/aaT																																																																															
MGA	23269	MSKCC	GRCh37	15	41989162	41989162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	133	605	0	ENST00000219905.7:c.1954G>A	p.Asp652Asn	p.D652N	ENST00000219905	NM_001164273.1	652	Gat/Aat																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223403	2223403	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	C			P-0016646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	60	543	0	ENST00000326181.6:c.1012+3G>C		p.X338_splice	ENST00000326181	NM_032271.2	338																																																																																
NF1	4763	MSKCC	GRCh37	17	29586096	29586096	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	76	509	0	ENST00000358273.4:c.4379A>C	p.His1460Pro	p.H1460P	ENST00000358273	NM_001042492.2	1460	cAt/cCt																																																																															
STK11	6794	MSKCC	GRCh37	19	1219349	1219349	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	262	668	1	ENST00000326873.7:c.401del	p.Cys134LeufsTer27	p.C134Lfs*27	ENST00000326873	NM_000455.4	134	tGt/tt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52676029	52676029	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0016646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1527	94	728	0	ENST00000394830.3:c.1028C>G	p.Ser343Ter	p.S343*	ENST00000394830	NM_018313.4	343	tCa/tGa																																																																															
TERT	7015	MSKCC	GRCh37	5	1293946	1293946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2054	593	1382	2	ENST00000310581.5:c.1055C>A	p.Pro352His	p.P352H	ENST00000310581	NM_198253.2	352	cCc/cAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0016651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	120	636	1	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372238	55372238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	91	612	1	ENST00000297316.4:c.928G>A	p.Gly310Ser	p.G310S	ENST00000297316	NM_022454.3	310	Ggc/Agc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0016655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	104	287	0	ENST00000346208.3:c.1299_1300dupCC	p.His434ProfsTer42	p.H434Pfs*42	ENST00000346208		433	cac/caCCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0016656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	68	252	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
CDH1	999	MSKCC	GRCh37	16	68772210	68772210	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	170	687	0	ENST00000261769.5:c.59G>A	p.Trp20Ter	p.W20*	ENST00000261769	NM_004360.3	20	tGg/tAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023008	27023010	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0016656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	10	57	0	ENST00000324856.7:c.126_128delGGC	p.Ala45del	p.A45del	ENST00000324856	NM_006015.4	38	gaGGCg/gag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118815	115118816	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	126	346	1	ENST00000257566.3:c.525_526insT	p.Ala176CysfsTer51	p.A176Cfs*51	ENST00000257566	NM_016569.3	175	-/T																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	273	501	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0016660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	125	379	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	152	413	0	ENST00000269305.4:c.686dup	p.Cys229TrpfsTer11	p.C229Wfs*11	ENST00000269305	NM_001126112.2	229	tgt/tgGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974758	21974771	+	frameshift_variant	Frame_Shift_Del	DEL	ACCCCGGGCCGCGG	ACCCCGGGCCGCGG	C			P-0016660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	66	247	0	ENST00000304494.5:c.56_69delinsG	p.Ala19GlyfsTer3	p.A19Gfs*3	ENST00000304494	NM_000077.4	19	gCCGCGGCCCGGGGT/gG																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0016661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	43	591	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
STK40	83931	MSKCC	GRCh37	1	36824360	36824360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	77	465	2	ENST00000373129.3:c.176C>T	p.Thr59Met	p.T59M	ENST00000373129	NM_032017.1	59	aCg/aTg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202276	138202276	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	39	503	0	ENST00000237289.4:c.2193G>T	p.Glu731Asp	p.E731D	ENST00000237289	NM_001270507.1	731	gaG/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0016665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1245	143	904	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	272	557	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
AGO2	27161	MSKCC	GRCh37	8	141561492	141561492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1620	141	443	0	ENST00000220592.5:c.1313G>A	p.Arg438Gln	p.R438Q	ENST00000220592	NM_012154.3	438	cGg/cAg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043465	180043465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	117	690	3	ENST00000261937.6:c.3121C>T	p.Arg1041Trp	p.R1041W	ENST00000261937	NM_182925.4	1041	Cgg/Tgg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778359	3778359	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	21	486	0	ENST00000262367.5:c.6689A>C	p.Gln2230Pro	p.Q2230P	ENST00000262367	NM_004380.2	2230	cAg/cCg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825543	50825543	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	253	612	0	ENST00000398568.2:c.2174C>G	p.Pro725Arg	p.P725R	ENST00000398568	NM_001042412.1	725	cCc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574005	7574008	+	frameshift_variant	Frame_Shift_Del	DEL	AACA	AACA	-			P-0016687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	850	955	0	ENST00000269305.4:c.1019_1022del	p.Met340ThrfsTer4	p.M340Tfs*4	ENST00000269305	NM_001126112.2	340	aTGTTc/ac																																																																															
JAK3	3718	MSKCC	GRCh37	19	17940883	17940914	+	splice_region_variant,intron_variant	Splice_Region	DEL	ACTGGGAAACTGAGGCTAGCCCTGCGGCGCTC	ACTGGGAAACTGAGGCTAGCCCTGCGGCGCTC	-			P-0016687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	97	947	0	ENST00000458235.1:c.3207+3_3207+34del		p.X1069_splice	ENST00000458235	NM_000215.3	1069																																																																																
CIC	23152	MSKCC	GRCh37	19	42799267	42799267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	73	585	0	ENST00000575354.2:c.4751G>A	p.Gly1584Glu	p.G1584E	ENST00000575354	NM_015125.3	1584	gGa/gAa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470570	25470583	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCAGTTTCCCC	CCCGCAGTTTCCCC	TCCA			P-0016687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	142	1155	5	ENST00000264709.3:c.891_904delinsTGGA	p.Trp297CysfsTer16	p.W297Cfs*16	ENST00000264709	NM_175629.2	297	tgGGGGAAACTGCGGGgc/tgTGGAgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023753	27023753	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	102	865	1	ENST00000324856.7:c.862del	p.Gln288SerfsTer75	p.Q288Sfs*75	ENST00000324856	NM_006015.4	287	Ccc/cc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692816	89692817	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	269	509	0	ENST00000371953.3:c.301dup	p.Ile101AsnfsTer6	p.I101Nfs*6	ENST00000371953	NM_000314.4	100	-/A																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871244	35871244	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	176	703	0	ENST00000216797.5:c.929T>G	p.Phe310Cys	p.F310C	ENST00000216797	NM_020529.2	310	tTt/tGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68844099	68844099	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0016689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	132	618	0	ENST00000261769.5:c.688-1G>A		p.X230_splice	ENST00000261769	NM_004360.3	230																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139402786	139402786	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	184	1061	1	ENST00000277541.6:c.3223T>A	p.Trp1075Arg	p.W1075R	ENST00000277541	NM_017617.3	1075	Tgg/Agg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0016690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	216	791	1	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
POLE	5426	MSKCC	GRCh37	12	133209090	133209090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	98	341	0	ENST00000320574.5:c.6141G>C	p.Met2047Ile	p.M2047I	ENST00000320574	NM_006231.2	2047	atG/atC																																																																															
SMO	6608	MSKCC	GRCh37	7	128845547	128845547	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	165	700	0	ENST00000249373.3:c.844C>A	p.Leu282Met	p.L282M	ENST00000249373	NM_005631.4	282	Ctg/Atg																																																																															
MGA	23269	MSKCC	GRCh37	15	42032374	42032374	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	63	597	0	ENST00000219905.7:c.4558G>C	p.Ala1520Pro	p.A1520P	ENST00000219905	NM_001164273.1	1520	Gcg/Ccg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88671966	88671966	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0016690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	96	804	0	ENST00000360948.2:c.1205-1G>A		p.X402_splice	ENST00000360948	NM_001012338.2	402																																																																																
TP53	7157	MSKCC	GRCh37	17	7577148	7577163	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATTACCACTACTCAG	GATTACCACTACTCAG	-			P-0016690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	273	868	0	ENST00000269305.4:c.783-8_790del		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
NF1	4763	MSKCC	GRCh37	17	29541477	29541478	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0016690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	103	363	0	ENST00000358273.4:c.1401_1402del	p.Phe468Ter	p.F468*	ENST00000358273	NM_001042492.2	467	acATtt/actt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660678	227660678	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	271	743	0	ENST00000305123.5:c.2777A>G	p.Gln926Arg	p.Q926R	ENST00000305123	NM_005544.2	926	cAg/cGg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610644	52610647	+	frameshift_variant	Frame_Shift_Del	DEL	TTTC	TTTC	-			P-0016690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	178	685	0	ENST00000394830.3:c.3526_3529del	p.Glu1176GlnfsTer16	p.E1176Qfs*16	ENST00000394830	NM_018313.4	1176	GAAAca/ca																																																																															
HGF	3082	MSKCC	GRCh37	7	81335615	81335615	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	168	641	1	ENST00000222390.5:c.1745T>A	p.Met582Lys	p.M582K	ENST00000222390	NM_000601.4	582	aTg/aAg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038858	47038894	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CAGGGCTCGGAGCCAAGCTCAGAGAACGCCAATGACA	CAGGGCTCGGAGCCAAGCTCAGAGAACGCCAATGACA	ATGATG			P-0016690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	56	495	0	ENST00000329236.7:c.634_670delinsATGATG	p.Gln212MetfsTer9	p.Q212Mfs*9	ENST00000329236	NM_001204466.1	212	CAGGGCTCGGAGCCAAGCTCAGAGAACGCCAATGACAcc/ATGATGcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	43	853	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0016694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	27	593	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879549	151879549	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	25	367	0	ENST00000262189.6:c.5396C>A	p.Ser1799Ter	p.S1799*	ENST00000262189	NM_170606.2	1799	tCa/tAa																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015010	37015010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	23	462	0	ENST00000358127.4:c.394G>T	p.Val132Phe	p.V132F	ENST00000358127	NM_001280556.1	132	Gtc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0016696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	928	488	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518340	204518340	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	109	378	0	ENST00000367182.3:c.1003T>A	p.Ser335Thr	p.S335T	ENST00000367182	NM_001278516.1	335	Tca/Aca																																																																															
MSI1	4440	MSKCC	GRCh37	12	120784020	120784020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1509	430	804	0	ENST00000257552.2:c.965C>A	p.Ala322Glu	p.A322E	ENST00000257552	NM_002442.3	322	gCg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175391	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0016696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	233	229	0	ENST00000257430.4:c.4101_4102dup	p.Thr1368ArgfsTer48	p.T1368Rfs*48	ENST00000257430	NM_000038.5	1367	cag/cAGag																																																																															
APC	324	MSKCC	GRCh37	5	112175476	112175477	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0016696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	161	273	0	ENST00000257430.4:c.4187_4188del	p.Phe1396Ter	p.F1396*	ENST00000257430	NM_000038.5	1395	agTTtt/agtt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56339083	56339084	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	AG	AG	CC			P-0016698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	24	62	0	ENST00000348428.3:c.208_209delinsCC	p.Ser70Pro	p.S70P	ENST00000348428	NM_006785.3	70	AGt/CCt																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538940	23538940	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	59	327	0	ENST00000380871.4:c.499C>G	p.Gln167Glu	p.Q167E	ENST00000380871	NM_006167.3	167	Caa/Gaa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	186	349	0	ENST00000206249.3:c.1607T>A	p.Leu536His	p.L536H	ENST00000206249	NM_000125.3	536	cTc/cAc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104264077	104264077	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1187	321	644	0	ENST00000369902.3:c.168del	p.Ile57SerfsTer39	p.I57Sfs*39	ENST00000369902	NM_016169.3	56	gcT/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1190	199	452	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0016701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	99	288	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864909	57864909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1281	143	520	0	ENST00000228682.2:c.2386C>A	p.Leu796Ile	p.L796I	ENST00000228682	NM_005269.2	796	Cta/Ata																																																																															
FLT1	2321	MSKCC	GRCh37	13	28886222	28886222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	99	380	0	ENST00000282397.4:c.3400C>G	p.Leu1134Val	p.L1134V	ENST00000282397	NM_002019.4	1134	Ctg/Gtg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633270	3633270	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1740	184	822	0	ENST00000294008.3:c.4981A>G	p.Lys1661Glu	p.K1661E	ENST00000294008	NM_032444.2	1661	Aag/Gag																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24143198	24143198	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1387	191	620	1	ENST00000263121.7:c.430G>T	p.Ala144Ser	p.A144S	ENST00000263121	NM_003073.3	144	Gcc/Tcc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12660111	12660111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	94	323	0	ENST00000251849.4:c.110G>A	p.Gly37Asp	p.G37D	ENST00000251849	NM_002880.3	37	gGc/gAc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332823	152332823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	94	335	0	ENST00000206249.3:c.1129C>T	p.His377Tyr	p.H377Y	ENST00000206249	NM_000125.3	377	Cac/Tac																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021700	69021700	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	166	373	0	ENST00000288368.4:c.2989del	p.Ala997ProfsTer19	p.A997Pfs*19	ENST00000288368	NM_024870.2	996	gcG/gc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391403	139391403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	147	488	1	ENST00000277541.6:c.6788G>T	p.Arg2263Leu	p.R2263L	ENST00000277541	NM_017617.3	2263	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	419	445	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	203	279	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976745	2976745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	129	462	2	ENST00000396946.4:c.1267C>T	p.Arg423Trp	p.R423W	ENST00000396946	NM_032415.4	423	Cgg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212457	5212457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	100	425	2	ENST00000357368.4:c.4660G>A	p.Ala1554Thr	p.A1554T	ENST00000357368	NM_002850.3	1554	Gcg/Acg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106862	27106862	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142069738		P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	91	255	0	ENST00000324856.7:c.6473G>A	p.Arg2158Gln	p.R2158Q	ENST00000324856	NM_006015.4	2158	cGa/cAa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729744	162729744	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	88	349	1	ENST00000367921.3:c.830G>T	p.Arg277Leu	p.R277L	ENST00000367921	NM_006182.2	277	cGc/cTc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120497807	120497807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	152	422	1	ENST00000256646.2:c.2075G>A	p.Arg692His	p.R692H	ENST00000256646	NM_024408.3	692	cGc/cAc																																																																															
FH	2271	MSKCC	GRCh37	1	241665814	241665814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1365	120	333	0	ENST00000366560.3:c.1165G>T	p.Gly389Trp	p.G389W	ENST00000366560	NM_000143.3	389	Ggg/Tgg																																																																															
RET	5979	MSKCC	GRCh37	10	43597802	43597802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	132	453	0	ENST00000355710.3:c.350C>A	p.Pro117His	p.P117H	ENST00000355710	NM_020975.4	117	cCc/cAc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851413	63851413	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	251	375	0	ENST00000279873.7:c.2191A>T	p.Ser731Cys	p.S731C	ENST00000279873	NM_032199.2	731	Agt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108121672	108121672	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	124	383	2	ENST00000278616.4:c.1480G>T	p.Gly494Cys	p.G494C	ENST00000278616	NM_000051.3	494	Ggt/Tgt																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281957	49281957	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	146	508	0	ENST00000282018.3:c.1004C>A	p.Pro335His	p.P335H	ENST00000282018	NM_020377.2	335	cCt/cAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858014	9858014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	122	356	0	ENST00000330684.3:c.3387C>A	p.His1129Gln	p.H1129Q	ENST00000330684	NM_001134407.1	1129	caC/caA																																																																															
FANCA	2175	MSKCC	GRCh37	16	89806405	89806405	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	256	387	0	ENST00000389301.3:c.3931A>T	p.Ser1311Cys	p.S1311C	ENST00000389301	NM_000135.2	1311	Agt/Tgt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618820	37618820	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	276	415	0	ENST00000447079.4:c.496G>C	p.Val166Leu	p.V166L	ENST00000447079	NM_015083.1	166	Gta/Cta																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40353863	40353863	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	156	274	0	ENST00000293328.3:c.2257A>T	p.Thr753Ser	p.T753S	ENST00000293328	NM_012448.3	753	Acc/Tcc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78599550	78599552	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	105	248	0	ENST00000306801.3:c.222_224del	p.Asp74_Val75delinsGlu	p.D74_V75delinsE	ENST00000306801	NM_020761.2	74	gaTGTg/gag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5211650	5211650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	96	318	1	ENST00000357368.4:c.5185G>T	p.Gly1729Cys	p.G1729C	ENST00000357368	NM_002850.3	1729	Ggt/Tgt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919755	50919755	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	122	478	0	ENST00000440232.2:c.2923G>C	p.Gly975Arg	p.G975R	ENST00000440232	NM_002691.3	975	Ggc/Cgc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426627	212426627	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	355	370	2	ENST00000342788.4:c.2487+1G>T		p.X829_splice	ENST00000342788	NM_005235.2	829																																																																																
DNMT3B	1789	MSKCC	GRCh37	20	31374344	31374344	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	105	381	1	ENST00000328111.2:c.343G>T	p.Glu115Ter	p.E115*	ENST00000328111	NM_006892.3	115	Gag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40828012	40828012	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	76	226	0	ENST00000373198.4:c.2416C>G	p.Gln806Glu	p.Q806E	ENST00000373198	NM_133170.3	806	Cag/Gag																																																																															
AURKA	6790	MSKCC	GRCh37	20	54958197	54958197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1621	175	546	0	ENST00000312783.6:c.410G>T	p.Arg137Leu	p.R137L	ENST00000312783	NM_198436.1	137	cGc/cTc																																																																															
NF2	4771	MSKCC	GRCh37	22	30035138	30035138	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	282	449	0	ENST00000338641.4:c.300T>G	p.Phe100Leu	p.F100L	ENST00000338641	NM_000268.3	100	ttT/ttG																																																																															
ATR	545	MSKCC	GRCh37	3	142218475	142218475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	144	363	0	ENST00000350721.4:c.5374G>T	p.Ala1792Ser	p.A1792S	ENST00000350721	NM_001184.3	1792	Gca/Tca																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430866	181430866	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	404	748	0	ENST00000325404.1:c.718A>T	p.Met240Leu	p.M240L	ENST00000325404	NM_003106.3	240	Atg/Ttg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55152116	55152116	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	158	449	0	ENST00000257290.5:c.2548G>T	p.Val850Leu	p.V850L	ENST00000257290	NM_006206.4	850	Gtg/Ttg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161671	56161671	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	109	375	0	ENST00000399503.3:c.1168C>T	p.Gln390Ter	p.Q390*	ENST00000399503	NM_005921.1	390	Cag/Tag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176631153	176631153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	107	305	0	ENST00000439151.2:c.1096G>T	p.Val366Leu	p.V366L	ENST00000439151	NM_022455.4	366	Gtg/Ttg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151835952	151835952	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1188	149	338	0	ENST00000262189.6:c.14572G>T	p.Glu4858Ter	p.E4858*	ENST00000262189	NM_170606.2	4858	Gaa/Taa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8525030	8525030	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	77	188	0	ENST00000356435.5:c.574C>A	p.Leu192Ile	p.L192I	ENST00000356435		192	Ctt/Att																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636759	8636759	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	94	270	0	ENST00000356435.5:c.150C>A	p.Asp50Glu	p.D50E	ENST00000356435		50	gaC/gaA																																																																															
ATRX	546	MSKCC	GRCh37	X	76972661	76972661	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	152	380	0	ENST00000373344.5:c.80A>T	p.Glu27Val	p.E27V	ENST00000373344	NM_000489.3	27	gAa/gTa																																																																															
SMO	6608	MSKCC	GRCh37	7	128846052	128846053	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1194	252	492	0	ENST00000249373.3:c.982_983delinsA	p.Gly328MetfsTer59	p.G328Mfs*59	ENST00000249373	NM_005631.4	328	GGt/At																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	363	410	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	42	305	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455075	50455075	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	162	237	0	ENST00000331340.3:c.622C>T	p.Arg208Ter	p.R208*	ENST00000331340	NM_006060.4	208	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	186	341	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	653	735	1	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	121	384	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411276	63411276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	343	234	0	ENST00000330258.3:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000330258	NM_152424.3	631	Cga/Tga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620541	52620541	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141958485		P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	291	384	0	ENST00000394830.3:c.3212G>A	p.Arg1071His	p.R1071H	ENST00000394830	NM_018313.4	1071	cGc/cAc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741513	17741513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	149	541	1	ENST00000250003.3:c.184C>T	p.His62Tyr	p.H62Y	ENST00000250003	NM_002478.4	62	Cac/Tac																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436431	110436431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1532	133	657	0	ENST00000375856.3:c.1970C>T	p.Thr657Met	p.T657M	ENST00000375856	NM_003749.2	657	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821732	72821732	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	31	249	0	ENST00000268489.5:c.10443G>C	p.Arg3481Ser	p.R3481S	ENST00000268489	NM_006885.3	3481	agG/agC																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368253	45368253	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	259	328	0	ENST00000262160.6:c.1349A>G	p.Asp450Gly	p.D450G	ENST00000262160	NM_005901.5	450	gAc/gGc																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	170	171	0	ENST00000257430.4:c.4063del	p.Ser1355LeufsTer60	p.S1355Lfs*60	ENST00000257430	NM_000038.5	1354	Ttt/tt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020378	69020379	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	A			P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	54	443	0	ENST00000288368.4:c.2750_2751delinsA	p.Thr917AsnfsTer26	p.T917Nfs*26	ENST00000288368	NM_024870.2	917	aCT/aA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	187	937	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138480	11138480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	140	999	1	ENST00000344626.4:c.3236C>T	p.Ser1079Leu	p.S1079L	ENST00000344626	NM_003072.3	1079	tCg/tTg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190670442	190670442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	73	747	0	ENST00000441310.2:c.380G>T	p.Gly127Val	p.G127V	ENST00000441310	NM_000534.4	127	gGc/gTc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793287	242793287	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	205	1387	1	ENST00000334409.5:c.790C>A	p.Arg264Ser	p.R264S	ENST00000334409	NM_005018.2	264	Cgc/Agc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024578	31024578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	48	795	0	ENST00000375687.4:c.4063G>A	p.Asp1355Asn	p.D1355N	ENST00000375687	NM_015338.5	1355	Gac/Aac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739119	40739119	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	42	635	0	ENST00000373198.4:c.3165C>A	p.Tyr1055Ter	p.Y1055*	ENST00000373198	NM_133170.3	1055	taC/taA																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1953902	1953902	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	148	1315	1	ENST00000382891.5:c.2081G>T	p.Cys694Phe	p.C694F	ENST00000382891	NM_133335.3	694	tGc/tTc																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64290041	64290041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	78	1027	0	ENST00000370651.3:c.484G>A	p.Asp162Asn	p.D162N	ENST00000370651	NM_003463.4	162	Gat/Aat																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021735	69021735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	72	936	3	ENST00000288368.4:c.3023G>A	p.Gly1008Asp	p.G1008D	ENST00000288368	NM_024870.2	1008	gGc/gAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	88	1420	2	ENST00000304494.5:c.457+1G>A		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																																
RBM10	8241	MSKCC	GRCh37	X	47034417	47034418	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	108	904	3	ENST00000329236.7:c.272-1_272delinsTT		p.X91_splice	ENST00000329236	NM_001204466.1	91																																																																																
AMER1	139285	MSKCC	GRCh37	X	63412830	63412831	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	A			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	120	1069	0	ENST00000330258.3:c.336_337delinsT	p.Glu112AspfsTer58	p.E112Dfs*58	ENST00000330258	NM_152424.3	112	gaAGga/gaTga																																																																															
STK11	6794	MSKCC	GRCh37	19	1219351	1219352	+	frameshift_variant	Frame_Shift_Ins	INS	GG	GG	TTT			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	112	1042	0	ENST00000326873.7:c.403_404delinsTTT	p.Gly135PhefsTer28	p.G135Ffs*28	ENST00000326873	NM_000455.4	135	GGc/TTTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0016710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	142	1291	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	143	980	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934174	49934174	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	70	1116	0	ENST00000296474.3:c.2333A>G	p.Asn778Ser	p.N778S	ENST00000296474	NM_002447.2	778	aAc/aGc																																																																															
RHEB	6009	MSKCC	GRCh37	7	151167659	151167659	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0016710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	120	853	0	ENST00000262187.5:c.460C>T	p.Gln154Ter	p.Q154*	ENST00000262187	NM_005614.3	154	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	196	966	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0016715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	8	415	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	17	775	2	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0016715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	10	393	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
ALK	238	MSKCC	GRCh37	2	29451921	29451921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	143	1140	1	ENST00000389048.3:c.2644G>A	p.Gly882Ser	p.G882S	ENST00000389048	NM_004304.4	882	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112111332	112111332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	75	490	0	ENST00000257430.4:c.429G>T	p.Leu143Phe	p.L143F	ENST00000257430	NM_000038.5	143	ttG/ttT																																																																															
HGF	3082	MSKCC	GRCh37	7	81374316	81374316	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0016715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	96	374	0	ENST00000222390.5:c.746G>T	p.Arg249Ile	p.R249I	ENST00000222390	NM_000601.4	249	aGa/aTa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39914672	39914672	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	175	968	0	ENST00000378444.4:c.4690A>T	p.Arg1564Ter	p.R1564*	ENST00000378444	NM_001123385.1	1564	Aga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112356	115112357	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0016719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	104	536	0	ENST00000257566.3:c.1382_1383dup	p.Thr462AlafsTer171	p.T462Afs*171	ENST00000257566	NM_016569.3	461	-/GC																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118894	115118894	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	152	621	0	ENST00000257566.3:c.447del	p.Tyr149Ter	p.Y149*	ENST00000257566	NM_016569.3	149	taC/ta																																																																															
CDH1	999	MSKCC	GRCh37	16	68772295	68772298	+	frameshift_variant	Frame_Shift_Del	DEL	AGGC	AGGC	-			P-0016719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	223	1042	0	ENST00000261769.5:c.144_147del	p.Arg48SerfsTer7	p.R48Sfs*7	ENST00000261769	NM_004360.3	48	agAGGC/ag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692911	89692911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	69	615	2	ENST00000371953.3:c.395G>T	p.Gly132Val	p.G132V	ENST00000371953	NM_000314.4	132	gGt/gTt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382214	152382214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	105	399	0	ENST00000206249.3:c.1324G>A	p.Gly442Arg	p.G442R	ENST00000206249	NM_000125.3	442	Gga/Aga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11303175	11303175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	128	397	0	ENST00000361445.4:c.1408C>T	p.His470Tyr	p.H470Y	ENST00000361445	NM_004958.3	470	Cat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579407	7579414	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGGGGC	ACAGGGGC	CCGGGGG			P-0016721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	137	642	1	ENST00000269305.4:c.273_280delinsCCCCCGG	p.Trp91CysfsTer32	p.W91Cfs*32	ENST00000269305	NM_001126112.2	91	tgGCCCCTGTca/tgCCCCCGGca																																																																															
SDHA	6389	MSKCC	GRCh37	5	236714	236714	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0016721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	47	203	0	ENST00000264932.6:c.1432G>T	p.Gly478Ter	p.G478*	ENST00000264932	NM_004168.2	478	Gga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175030	112175030	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	23	220	0	ENST00000257430.4:c.3739G>T	p.Ala1247Ser	p.A1247S	ENST00000257430	NM_000038.5	1247	Gcc/Tcc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106543490	106543490	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	66	302	0	ENST00000369096.4:c.292G>T	p.Val98Phe	p.V98F	ENST00000369096	NM_001198.3	98	Gtt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1597	146	587	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974765	21974765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	87	184	0	ENST00000304494.5:c.62C>A	p.Ala21Asp	p.A21D	ENST00000304494	NM_000077.4	21	gCc/gAc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247442	71247442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	203	390	0	ENST00000318789.4:c.91G>T	p.Gly31Cys	p.G31C	ENST00000318789	NM_032682.5	31	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577088	7577088	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1413	300	600	0	ENST00000269305.4:c.850A>C	p.Thr284Pro	p.T284P	ENST00000269305	NM_001126112.2	284	Aca/Cca																																																																															
MPL	4352	MSKCC	GRCh37	1	43803598	43803598	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	99	353	0	ENST00000372470.3:c.79G>T	p.Asp27Tyr	p.D27Y	ENST00000372470	NM_005373.2	27	Gat/Tat																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175956229	175956229	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	150	323	0	ENST00000367669.3:c.1983T>A	p.Asn661Lys	p.N661K	ENST00000367669	NM_022457.5	661	aaT/aaA																																																																															
CCND1	595	MSKCC	GRCh37	11	69457796	69457796	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	C			P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	41	244	0	ENST00000227507.2:c.199-3T>C		p.X67_splice	ENST00000227507	NM_053056.2	67																																																																																
CDH1	999	MSKCC	GRCh37	16	68844107	68844107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	96	340	0	ENST00000261769.5:c.695C>T	p.Ser232Phe	p.S232F	ENST00000261769	NM_004360.3	232	tCt/tTt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41249267	41249267	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1706	155	604	0	ENST00000357654.3:c.587A>C	p.Tyr196Ser	p.Y196S	ENST00000357654	NM_007294.3	196	tAt/tCt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610225	10610225	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1206	242	508	0	ENST00000171111.5:c.485A>G	p.Tyr162Cys	p.Y162C	ENST00000171111	NM_203500.1	162	tAc/tGc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626736	12626736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149580968		P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	72	314	0	ENST00000251849.4:c.1553G>A	p.Arg518Gln	p.R518Q	ENST00000251849	NM_002880.3	518	cGa/cAa																																																																															
STK19	8859	MSKCC	GRCh37	6	31948503	31948503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	162	415	0	ENST00000375331.2:c.974G>T	p.Arg325Leu	p.R325L	ENST00000375331	NM_004197.1	325	cGg/cTg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117679105	117679105	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs56192249		P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	258	393	0	ENST00000368508.3:c.3716A>T	p.Tyr1239Phe	p.Y1239F	ENST00000368508	NM_002944.2	1239	tAc/tTc																																																																															
HGF	3082	MSKCC	GRCh37	7	81372684	81372684	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	45	202	0	ENST00000222390.5:c.850G>C	p.Ala284Pro	p.A284P	ENST00000222390	NM_000601.4	284	Gca/Cca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0016725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	63	332	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0016725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	52	391	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
CDH1	999	MSKCC	GRCh37	16	68835780	68835781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	43	1178	2	ENST00000261769.5:c.377dup	p.Pro127AlafsTer41	p.P127Afs*41	ENST00000261769	NM_004360.3	124	cgc/cgCc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929262	32929262	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1180	75	1590	1	ENST00000380152.3:c.7272G>T	p.Arg2424Ser	p.R2424S	ENST00000380152		2424	agG/agT																																																																															
RAD52	5893	MSKCC	GRCh37	12	1040408	1040408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	185	1111	1	ENST00000358495.3:c.164G>A	p.Arg55His	p.R55H	ENST00000358495	NM_134424.2	55	cGc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980849	40980849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	218	998	4	ENST00000373198.4:c.1637G>A	p.Arg546Gln	p.R546Q	ENST00000373198	NM_133170.3	546	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	202	908	0	ENST00000257430.4:c.4364delA	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430823	78430830	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTGAAC	TCTTGAAC	-			P-0016731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	216	1294	0	ENST00000370768.2:c.559_566del	p.Val187AsnfsTer6	p.V187Nfs*6	ENST00000370768	NM_003902.3	187	GTTCAAGAa/a																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223947	36223955	+	inframe_deletion	In_Frame_Del	DEL	TCCCAGGGG	TCCCAGGGG	-			P-0016731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	75	1838	0	ENST00000222270.7:c.6497_6505del	p.Leu2166_Ala2169delinsPro	p.L2166_A2169delinsP	ENST00000222270	NM_014727.1	2166	cTCCCAGGGGcc/ccc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31409211	31409211	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	228	1210	0	ENST00000344624.3:c.3806G>C	p.Cys1269Ser	p.C1269S	ENST00000344624		1269	tGc/tCc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151947017	151947017	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	161	840	0	ENST00000262189.6:c.1757A>G	p.Glu586Gly	p.E586G	ENST00000262189	NM_170606.2	586	gAg/gGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	620	826	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	364	835	0	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0016732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	117	761	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
RAD51C	5889	MSKCC	GRCh37	17	56811497	56811497	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	252	1042	2	ENST00000337432.4:c.1045A>G	p.Thr349Ala	p.T349A	ENST00000337432	NM_058216.2	349	Act/Gct																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78921143	78921143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	121	605	1	ENST00000306801.3:c.3257C>T	p.Thr1086Met	p.T1086M	ENST00000306801	NM_020761.2	1086	aCg/aTg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259167	36259167	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	445	1125	2	ENST00000300305.3:c.324C>A	p.Cys108Ter	p.C108*	ENST00000300305		108	tgC/tgA																																																																															
TAP1	6890	MSKCC	GRCh37	6	32813370	32813370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1510	257	1521	1	ENST00000354258.4:c.2413G>T	p.Asp805Tyr	p.D805Y	ENST00000354258	NM_000593.5	805	Gat/Tat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993399	72993399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	57	1401	0	ENST00000268489.5:c.646C>T	p.Pro216Ser	p.P216S	ENST00000268489	NM_006885.3	216	Ccg/Tcg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63810652	63810652	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	260	675	0	ENST00000279873.7:c.739A>G	p.Asn247Asp	p.N247D	ENST00000279873	NM_032199.2	247	Aat/Gat																																																																															
POLE	5426	MSKCC	GRCh37	12	133220012	133220012	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	85	1035	0	ENST00000320574.5:c.4425G>C	p.Gln1475His	p.Q1475H	ENST00000320574	NM_006231.2	1475	caG/caC																																																																															
FLT3	2322	MSKCC	GRCh37	13	28609721	28609721	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	83	1471	1	ENST00000241453.7:c.1508T>A	p.Met503Lys	p.M503K	ENST00000241453	NM_004119.2	503	aTg/aAg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56339014	56339014	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	23	158	1	ENST00000348428.3:c.139C>T	p.Gln47Ter	p.Q47*	ENST00000348428	NM_006785.3	47	Cag/Tag																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29099511	29099535	+	frameshift_variant	Frame_Shift_Del	DEL	TAATCTTCTGCATCAAAAAAGTTTT	TAATCTTCTGCATCAAAAAAGTTTT	-			P-0016733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	93	1415	0	ENST00000328354.6:c.866_890del	p.Lys289IlefsTer7	p.K289Ifs*7	ENST00000328354	NM_007194.3	289	aAAAACTTTTTTGATGCAGAAGATTAt/at																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427700	72427700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	156	586	1	ENST00000477973.2:c.788G>A	p.Glu264Lys	p.E264K	ENST00000477973	NM_012234.5	264	Gaa/Aaa																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84406180	84406180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	208	1129	1	ENST00000321945.7:c.46G>A	p.Gly16Ser	p.G16S	ENST00000321945	NM_139076.2	16	Ggc/Agc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151960216	151960216	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0016733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	78	503	0	ENST00000262189.6:c.1185-1G>C		p.X395_splice	ENST00000262189	NM_170606.2	395																																																																																
IKBKE	9641	MSKCC	GRCh37	1	206665080	206665080	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	160	736	1	ENST00000367120.3:c.1833G>A	p.Met611Ile	p.M611I	ENST00000367120	NM_014002.3	611	atG/atA																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115861	8115886	+	frameshift_variant	Frame_Shift_Del	DEL	CTGAGCCACATCTCGCCCTTCAGCCA	CTGAGCCACATCTCGCCCTTCAGCCA	-			P-0016734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1647	254	1451	0	ENST00000346208.3:c.1209_1234del	p.Ser404GlnfsTer94	p.S404Qfs*94	ENST00000346208		403	CTGAGCCACATCTCGCCCTTCAGCCAc/c																																																																															
SPOP	8405	MSKCC	GRCh37	17	47684718	47684718	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	998	1342	2	ENST00000347630.2:c.731A>G	p.Asn244Ser	p.N244S	ENST00000347630	NM_001007230.1	244	aAt/aGt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25973231	25973231	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	171	665	0	ENST00000435504.4:c.1194T>A	p.Asp398Glu	p.D398E	ENST00000435504		398	gaT/gaA																																																																															
IRF4	3662	MSKCC	GRCh37	6	401430	401430	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199834880		P-0016734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	74	324	1	ENST00000380956.4:c.752G>A	p.Arg251Gln	p.R251Q	ENST00000380956	NM_001195286.1	251	cGg/cAg																																																																															
MET	4233	MSKCC	GRCh37	7	116339387	116339387	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	115	660	0	ENST00000397752.3:c.249G>C	p.Glu83Asp	p.E83D	ENST00000397752	NM_000245.2	83	gaG/gaC																																																																															
MET	4233	MSKCC	GRCh37	7	116411877	116411888	+	intron_variant	Intron	DEL	AGCTCTTTCTTT	AGCTCTTTCTTT	-			P-0016736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1668	314	2083	0	ENST00000397752.3:c.2888-26_2888-15delAGCTCTTTCTTT		p.*963*	ENST00000397752	NM_000245.2																																																																																	
ARID1A	8289	MSKCC	GRCh37	1	27023307	27023307	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	83	278	0	ENST00000324856.7:c.413C>G	p.Ser138Ter	p.S138*	ENST00000324856	NM_006015.4	138	tCa/tGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	428	324	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578518	7578518	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs28934875		P-0016739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1127	534	969	0	ENST00000269305.4:c.412G>C	p.Ala138Pro	p.A138P	ENST00000269305	NM_001126112.2	138	Gcc/Ccc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1380	64	905	0	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	28	597	0	ENST00000263967.3:c.1634A>C	p.Glu545Ala	p.E545A	ENST00000263967	NM_006218.2	545	gAg/gCg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	95	417	0				ENST00000310581	NM_198253.2																																																																																	
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0016744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1190	284	568	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251839	212251839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	32	239	0	ENST00000342788.4:c.3220G>A	p.Glu1074Lys	p.E1074K	ENST00000342788	NM_005235.2	1074	Gaa/Aaa																																																																															
ATM	472	MSKCC	GRCh37	11	108186757	108186757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	201	534	0	ENST00000278616.4:c.6115G>A	p.Glu2039Lys	p.E2039K	ENST00000278616	NM_000051.3	2039	Gaa/Aaa																																																																															
IGF2	3481	MSKCC	GRCh37	11	2156680	2156680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1236	91	591	1	ENST00000434045.2:c.242C>A	p.Ala81Asp	p.A81D	ENST00000434045	NM_001127598.1	81	gCt/gAt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953214	81953214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	67	217	0	ENST00000359376.3:c.2180G>A	p.Arg727Gln	p.R727Q	ENST00000359376	NM_002661.3	727	cGa/cAa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618499	37618499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	70	418	1	ENST00000447079.4:c.175G>A	p.Glu59Lys	p.E59K	ENST00000447079	NM_015083.1	59	Gaa/Aaa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17124884	17124890	+	stop_gained	Nonsense_Mutation	DEL	CGGTCGG	CGGTCGG	A			P-0016744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	163	535	1	ENST00000285071.4:c.832_838delinsT	p.Pro278_Glu280delinsTer	p.P278_E280delins*	ENST00000285071	NM_144997.5	278	CCGACCGag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	42	450	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380276	+	missense_variant	Missense_Mutation	DNP	TT	TT	CA			P-0016748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	143	425	1	ENST00000256078.4:c.182_183delAAinsTG	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAA/cTG																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0016764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	124	685	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	72	711	1	ENST00000269305.4:c.808T>C	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	Ttt/Ctt																																																																															
APC	324	MSKCC	GRCh37	5	112157682	112157682	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	75	308	0	ENST00000257430.4:c.1402G>T	p.Glu468Ter	p.E468*	ENST00000257430	NM_000038.5	468	Gaa/Taa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411777	63411777	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	97	814	0	ENST00000330258.3:c.1390del	p.Ala464ProfsTer77	p.A464Pfs*77	ENST00000330258	NM_152424.3	464	Gcc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			42	47	541	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			48	15	550	1	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132464	11132468	+	stop_gained	Nonsense_Mutation	ONP	ACGCA	ACGCA	TAGCT			P-0016766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			106	14	576	0	ENST00000344626.4:c.2680_2684delinsTAGCT	p.Thr894_Gln895delinsTer	p.T894_Q895delins*	ENST00000344626	NM_003072.3	894	ACGCAg/TAGCTg																																																																															
RET	5979	MSKCC	GRCh37	10	43619172	43619172	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			90	35	473	0	ENST00000355710.3:c.2855A>G	p.Tyr952Cys	p.Y952C	ENST00000355710	NM_020975.4	952	tAt/tGt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43769885	43769885	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			53	14	496	1	ENST00000382044.4:c.861A>T	p.Gln287His	p.Q287H	ENST00000382044	NM_001141980.1	287	caA/caT																																																																															
ACVR1	90	MSKCC	GRCh37	2	158630660	158630660	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			40	18	430	0	ENST00000263640.3:c.583G>T	p.Gly195Cys	p.G195C	ENST00000263640	NM_001105.4	195	Ggt/Tgt																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62326191	62326191	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			66	20	495	2	ENST00000508582.2:c.3279G>T	p.Arg1093Ser	p.R1093S	ENST00000508582		1093	agG/agT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47143006	47143006	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			105	42	621	0	ENST00000409792.3:c.4957A>C	p.Thr1653Pro	p.T1653P	ENST00000409792	NM_014159.6	1653	Acc/Ccc																																																																															
ATRX	546	MSKCC	GRCh37	X	76890135	76890135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			42	38	615	0	ENST00000373344.5:c.4759G>T	p.Gly1587Cys	p.G1587C	ENST00000373344	NM_000489.3	1587	Ggt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	271	564	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	443	610	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	80	338	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245447	153245447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	286	507	0	ENST00000281708.4:c.1744T>C	p.Ser582Pro	p.S582P	ENST00000281708	NM_033632.3	582	Tcg/Ccg																																																																															
MGA	23269	MSKCC	GRCh37	15	42052636	42052636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	201	411	0	ENST00000219905.7:c.7307G>A	p.Arg2436His	p.R2436H	ENST00000219905	NM_001164273.1	2436	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099089	27099089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	182	529	2	ENST00000324856.7:c.3505C>A	p.Pro1169Thr	p.P1169T	ENST00000324856	NM_006015.4	1169	Cca/Aca																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176176017	176176017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	145	457	0	ENST00000367669.3:c.98C>T	p.Ser33Phe	p.S33F	ENST00000367669	NM_022457.5	33	tCt/tTt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88672029	88672029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	109	447	0	ENST00000372037.3:c.563G>A	p.Arg188His	p.R188H	ENST00000372037	NM_004329.2	188	cGt/cAt																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182001	38182001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	156	367	0	ENST00000396334.3:c.625C>T	p.Arg209Cys	p.R209C	ENST00000396334	NM_002468.4	209	Cgc/Tgc																																																																															
MST1	4485	MSKCC	GRCh37	3	49721518	49721519	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	179	481	0	ENST00000449682.2:c.2119_2120dup	p.Phe708SerfsTer16	p.F708Sfs*16	ENST00000449682	NM_020998.3	707	gtc/gtGTc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143043279	143043279	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	38	384	0	ENST00000262992.4:c.2135+2T>A		p.X712_splice	ENST00000262992	NM_001101669.1	712																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153245380	153245380	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	160	493	0	ENST00000281708.4:c.1811A>C	p.Lys604Thr	p.K604T	ENST00000281708	NM_033632.3	604	aAa/aCa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151875096	151875097	+	splice_acceptor_variant	Splice_Site	INS	-	-	TT			P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	13	51	1	ENST00000262189.6:c.7443-3_7443-2dupAA		p.X2481_splice	ENST00000262189	NM_170606.2	2481																																																																																
TEK	7010	MSKCC	GRCh37	9	27203118	27203118	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	168	468	2	ENST00000380036.4:c.2209+1G>T		p.X737_splice	ENST00000380036	NM_000459.3	737																																																																																
BTK	695	MSKCC	GRCh37	X	100611203	100611203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	353	410	1	ENST00000308731.7:c.1403G>A	p.Arg468His	p.R468H	ENST00000308731	NM_000061.2	468	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685281	89685281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	116	395	0	ENST00000371953.3:c.176C>G	p.Ser59Ter	p.S59*	ENST00000371953	NM_000314.4	59	tCa/tGa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061212	38061235	+	inframe_deletion	In_Frame_Del	DEL	GTAGCAGCCGTTCTCGAACATGTT	GTAGCAGCCGTTCTCGAACATGTT	-			P-0016768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	178	487	1	ENST00000250448.2:c.754_777del	p.Asn252_Tyr259del	p.N252_Y259del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTGCTAC/-																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830184	72830184	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	32	289	0	ENST00000268489.5:c.6397C>T	p.Gln2133Ter	p.Q2133*	ENST00000268489	NM_006885.3	2133	Cag/Tag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89877127	89877127	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	49	604	0	ENST00000389301.3:c.510A>T	p.Leu170Phe	p.L170F	ENST00000389301	NM_000135.2	170	ttA/ttT																																																																															
PMAIP1	5366	MSKCC	GRCh37	18	57567446	57567446	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	81	451	0	ENST00000316660.6:c.37A>T	p.Ser13Cys	p.S13C	ENST00000316660	NM_021127.2	13	Agc/Tgc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128038130	128038130	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	88	488	0	ENST00000285398.2:c.1420G>C	p.Asp474His	p.D474H	ENST00000285398	NM_000122.1	474	Gat/Cat																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670646	134670646	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	104	733	0	ENST00000398015.3:c.557T>C	p.Leu186Pro	p.L186P	ENST00000398015	NM_004441.4	186	cTt/cCt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803755	1803755	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0016768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	138	531	1	ENST00000260795.2:c.930+3G>A		p.X310_splice	ENST00000260795		310																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139393371	139393374	+	missense_variant	Missense_Mutation	ONP	TGTT	TGTT	CAGG			P-0016768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	54	676	1	ENST00000277541.6:c.6157_6160delinsCCTG	p.Asn2053_Lys2054delinsProGlu	p.N2053_K2054delinsPE	ENST00000277541	NM_017617.3	2053	AACAaa/CCTGaa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417454	139417454	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	150	836	0	ENST00000277541.6:c.590A>T	p.Asn197Ile	p.N197I	ENST00000277541	NM_017617.3	197	aAc/aTc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	222	562	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	341	802	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1202793339		P-0016770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	146	651	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
FUBP1	8880	MSKCC	GRCh37	1	78444680	78444680	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	28	491	0	ENST00000370768.2:c.9C>G	p.Asp3Glu	p.D3E	ENST00000370768	NM_003902.3	3	gaC/gaG																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411983	63411983	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	37	755	1	ENST00000330258.3:c.1184A>T	p.Glu395Val	p.E395V	ENST00000330258	NM_152424.3	395	gAg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	678	740	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0016774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	77	734	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	272	499	1	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578188	7578188	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1144	347	746	1	ENST00000269305.4:c.661G>T	p.Glu221Ter	p.E221*	ENST00000269305	NM_001126112.2	221	Gag/Tag																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546985	9546985	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	108	236	0	ENST00000353224.5:c.1037G>T	p.Gly346Val	p.G346V	ENST00000353224	NM_177990.2	346	gGg/gTg																																																																															
RB1	5925	MSKCC	GRCh37	13	49027248	49027248	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	275	498	0	ENST00000267163.4:c.1814+1G>A		p.X605_splice	ENST00000267163	NM_000321.2	605																																																																																
RPS6KA4	8986	MSKCC	GRCh37	11	64138172	64138172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	150	686	1	ENST00000334205.4:c.2095C>T	p.Arg699Cys	p.R699C	ENST00000334205	NM_003942.2	699	Cgc/Tgc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72163700	72163700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	316	581	0	ENST00000357731.5:c.658G>A	p.Val220Ile	p.V220I	ENST00000357731	NM_173808.2	220	Gtt/Att																																																																															
FH	2271	MSKCC	GRCh37	1	241665808	241665808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	387	550	0	ENST00000366560.3:c.1171C>T	p.His391Tyr	p.H391Y	ENST00000366560	NM_000143.3	391	Cat/Tat																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563057	21563057	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	347	761	0	ENST00000382592.4:c.862A>C	p.Ser288Arg	p.S288R	ENST00000382592	NM_014572.2	288	Agc/Cgc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100041	30100041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	291	558	0	ENST00000331968.5:c.1579G>T	p.Asp527Tyr	p.D527Y	ENST00000331968	NM_002742.2	527	Gat/Tat																																																																															
STK11	6794	MSKCC	GRCh37	19	1220370	1220371	+	splice_acceptor_variant	Splice_Site	DNP	AG	AG	TC			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	249	477	2	ENST00000326873.7:c.465-2_465-1delinsTC		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602581	10602581	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	291	524	0	ENST00000171111.5:c.997G>C	p.Gly333Arg	p.G333R	ENST00000171111	NM_203500.1	333	Ggc/Cgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213313	36213313	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	245	736	0	ENST00000222270.7:c.2510C>G	p.Ser837Cys	p.S837C	ENST00000222270	NM_014727.1	837	tCc/tGc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793440	242793440	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	320	621	2	ENST00000334409.5:c.637C>A	p.Pro213Thr	p.P213T	ENST00000334409	NM_005018.2	213	Ccc/Acc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128199890	128199890	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	87	236	0	ENST00000341105.2:c.1415C>A	p.Pro472Gln	p.P472Q	ENST00000341105	NM_032638.4	472	cCg/cAg																																																																															
BCL6	604	MSKCC	GRCh37	3	187447318	187447318	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	40	445	0	ENST00000232014.4:c.875C>G	p.Pro292Arg	p.P292R	ENST00000232014	NM_001130845.1	292	cCc/cGc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542261	187542261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	130	357	0	ENST00000441802.2:c.5479G>T	p.Gly1827Cys	p.G1827C	ENST00000441802	NM_005245.3	1827	Ggt/Tgt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528630	157528630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	369	675	0	ENST00000346085.5:c.6355G>T	p.Val2119Phe	p.V2119F	ENST00000346085	NM_020732.3	2119	Gtt/Ttt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729425	41729425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	99	425	0	ENST00000242208.4:c.1104C>A	p.Phe368Leu	p.F368L	ENST00000242208	NM_002192.2	368	ttC/ttA																																																																															
MET	4233	MSKCC	GRCh37	7	116380109	116380109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	375	653	0	ENST00000397752.3:c.1498G>T	p.Gly500Cys	p.G500C	ENST00000397752	NM_000245.2	500	Ggc/Tgc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285821	87285821	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	285	561	0	ENST00000277120.3:c.158T>A	p.Val53Glu	p.V53E	ENST00000277120		53	gTg/gAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76937815	76937815	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	197	311	2	ENST00000373344.5:c.2933C>A	p.Ser978Tyr	p.S978Y	ENST00000373344	NM_000489.3	978	tCt/tAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0016780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	110	772	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	49	777	0	ENST00000256078.4:c.38G>T	p.Gly13Val	p.G13V	ENST00000256078	NM_033360.2	13	gGc/gTc																																																																															
MAX	4149	MSKCC	GRCh37	14	65544682	65544682	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	74	679	0	ENST00000358664.4:c.244C>T	p.Gln82Ter	p.Q82*	ENST00000358664	NM_002382.4	82	Cag/Tag																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430851	78430851	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	76	689	0	ENST00000370768.2:c.538G>T	p.Gly180Cys	p.G180C	ENST00000370768	NM_003902.3	180	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574023	7574043	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGCCCACGGATCTGCAGCAAC	CGCCCACGGATCTGCAGCAAC	-			P-0016780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	91	820	2	ENST00000269305.4:c.994-10_1004del		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
CALR	811	MSKCC	GRCh37	19	13054391	13054391	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	106	699	0	ENST00000316448.5:c.1001A>G	p.Asn334Ser	p.N334S	ENST00000316448	NM_004343.3	334	aAc/aGc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866394	42866394	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	75	738	0	ENST00000398585.3:c.238C>T	p.Gln80Ter	p.Q80*	ENST00000398585	NM_001135099.1	80	Cag/Tag																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435894	149435894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	74	673	0	ENST00000286301.3:c.2330G>A	p.Arg777Gln	p.R777Q	ENST00000286301	NM_005211.3	777	cGg/cAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395132	139395132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	134	577	2	ENST00000277541.6:c.5806G>A	p.Ala1936Thr	p.A1936T	ENST00000277541	NM_017617.3	1936	Gcc/Acc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038816	47038864	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTACCAGGCCCAGGGAGTCCTGGCCTCCCAAGCCCTGTCACAGGGCT	CCCTACCAGGCCCAGGGAGTCCTGGCCTCCCAAGCCCTGTCACAGGGCT	-			P-0016780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	122	779	0	ENST00000329236.7:c.593_641del	p.Pro198ArgfsTer17	p.P198Rfs*17	ENST00000329236	NM_001204466.1	198	CCCTACCAGGCCCAGGGAGTCCTGGCCTCCCAAGCCCTGTCACAGGGCTcg/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	122	716	0	ENST00000269305.4:c.596G>A	p.Gly199Glu	p.G199E	ENST00000269305	NM_001126112.2	199	gGa/gAa																																																																															
EED	8726	MSKCC	GRCh37	11	85989562	85989562	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	64	329	0	ENST00000263360.6:c.1321C>T	p.Arg441Ter	p.R441*	ENST00000263360	NM_003797.3	441	Cga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1220707	1220707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	129	626	0	ENST00000326873.7:c.725G>T	p.Gly242Val	p.G242V	ENST00000326873	NM_000455.4	242	gGg/gTg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498424	89498424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	41	273	2	ENST00000336596.2:c.2396G>A	p.Arg799His	p.R799H	ENST00000336596	NM_005233.5	799	cGc/cAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610454	10610454	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	94	534	0	ENST00000171111.5:c.256C>T	p.Gln86Ter	p.Q86*	ENST00000171111	NM_203500.1	86	Cag/Tag																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724696	112724696	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	99	547	0	ENST00000369452.4:c.580C>G	p.Leu194Val	p.L194V	ENST00000369452	NM_007373.3	194	Ctc/Gtc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95590578	95590578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	89	459	0	ENST00000343455.3:c.1331G>A	p.Gly444Glu	p.G444E	ENST00000343455	NM_177438.2	444	gGa/gAa																																																																															
B2M	567	MSKCC	GRCh37	15	45007806	45007807	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0016781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	73	419	0	ENST00000558401.1:c.253_254del	p.Leu85ValfsTer4	p.L85Vfs*4	ENST00000558401	NM_004048.2	85	TTg/g																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476325	88476325	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	33	652	0	ENST00000360948.2:c.1807T>A	p.Phe603Ile	p.F603I	ENST00000360948	NM_001012338.2	603	Ttc/Atc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14038621	14038621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	117	507	0	ENST00000311895.7:c.1946G>A	p.Arg649Lys	p.R649K	ENST00000311895	NM_005236.2	649	aGa/aAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584709	48584709	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0016781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	94	501	0	ENST00000342988.3:c.788-1G>C		p.X263_splice	ENST00000342988	NM_005359.5	263																																																																																
IRS1	3667	MSKCC	GRCh37	2	227662167	227662167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	98	619	0	ENST00000305123.5:c.1288G>A	p.Glu430Lys	p.E430K	ENST00000305123	NM_005544.2	430	Gag/Aag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52662909	52662909	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0016781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	91	420	0	ENST00000394830.3:c.1443+1G>C		p.X481_splice	ENST00000394830	NM_018313.4	481																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89498472	89498472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	32	281	0	ENST00000336596.2:c.2446del	p.Glu816ArgfsTer2	p.E816Rfs*2	ENST00000336596	NM_005233.5	815	tGg/tg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505342	186505342	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	70	320	0	ENST00000323963.5:c.968C>G	p.Ser323Ter	p.S323*	ENST00000323963		323	tCa/tGa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032210	26032210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	32	167	0	ENST00000244661.2:c.79C>A	p.Arg27Ser	p.R27S	ENST00000244661	NM_003537.3	27	Cgc/Agc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120582	94120582	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	73	445	0	ENST00000369303.4:c.469C>A	p.Gln157Lys	p.Q157K	ENST00000369303	NM_004440.3	157	Caa/Aaa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372142	55372142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	173	665	0	ENST00000297316.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000297316	NM_022454.3	278	Ccc/Acc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88677042	88677054	+	frameshift_variant	Frame_Shift_Del	DEL	AAATCTACCAAAC	AAATCTACCAAAC	-			P-0016781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	449	81	0	ENST00000372037.3:c.827_839del	p.Glu276ValfsTer3	p.E276Vfs*3	ENST00000372037	NM_004329.2	276	gAAATCTACCAAACt/gt																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	106	441	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	125	667	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247207	153247207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	65	599	0	ENST00000281708.4:c.1595C>T	p.Thr532Ile	p.T532I	ENST00000281708	NM_033632.3	532	aCc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	88	723	2	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523321	9523321	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	58	541	1	ENST00000353224.5:c.1916G>T	p.Gly639Val	p.G639V	ENST00000353224	NM_177990.2	639	gGc/gTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291496	15291496	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	68	465	0	ENST00000263388.2:c.3138G>C	p.Gln1046His	p.Q1046H	ENST00000263388	NM_000435.2	1046	caG/caC																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602921	10602923	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1351	223	902	0	ENST00000171111.5:c.655_657del	p.Glu219del	p.E219del	ENST00000171111	NM_203500.1	219	GAG/-																																																																															
POLE	5426	MSKCC	GRCh37	12	133225637	133225637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	74	550	2	ENST00000320574.5:c.4027G>A	p.Gly1343Ser	p.G1343S	ENST00000320574	NM_006231.2	1343	Ggc/Agc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436717	110436717	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1744	154	923	1	ENST00000375856.3:c.1684del	p.Asp562ThrfsTer17	p.D562Tfs*17	ENST00000375856	NM_003749.2	562	Gac/ac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779419	3779419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	91	533	0	ENST00000262367.5:c.5629G>A	p.Val1877Met	p.V1877M	ENST00000262367	NM_004380.2	1877	Gtg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827310	72827310	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	103	674	1	ENST00000268489.5:c.9271C>A	p.Leu3091Ile	p.L3091I	ENST00000268489	NM_006885.3	3091	Ctt/Att																																																																															
CD79B	974	MSKCC	GRCh37	17	62007704	62007704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	36	324	0	ENST00000392795.3:c.163G>A	p.Ala55Thr	p.A55T	ENST00000392795	NM_001039933.1	55	Gcc/Acc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533802	63533802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	53	422	0	ENST00000307078.5:c.1352G>A	p.Gly451Asp	p.G451D	ENST00000307078	NM_004655.3	451	gGc/gAc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78727933	78727933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	86	498	0	ENST00000306801.3:c.778G>A	p.Ala260Thr	p.A260T	ENST00000306801	NM_020761.2	260	Gct/Act																																																																															
PMAIP1	5366	MSKCC	GRCh37	18	57567428	57567428	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1322	142	557	0	ENST00000316660.6:c.19C>G	p.Arg7Gly	p.R7G	ENST00000316660	NM_021127.2	7	Cgc/Ggc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138600	11138600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	96	557	1	ENST00000344626.4:c.3356G>A	p.Arg1119His	p.R1119H	ENST00000344626	NM_003072.3	1119	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36209197	36209202	+	inframe_deletion	In_Frame_Del	DEL	CGGGGA	CGGGGA	-			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	32	138	0	ENST00000222270.7:c.282_287del	p.Arg99_Gly100del	p.R99_G100del	ENST00000222270	NM_014727.1	93	CGGGGA/-																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214738	36214738	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	143	467	0	ENST00000222270.7:c.3164G>T	p.Arg1055Leu	p.R1055L	ENST00000222270	NM_014727.1	1055	cGg/cTg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47705652	47705652	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	107	375	0	ENST00000233146.2:c.2452A>T	p.Lys818Ter	p.K818*	ENST00000233146	NM_000251.2	818	Aag/Tag																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38946591	38946591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	40	438	0	ENST00000357387.3:c.4378G>A	p.Ala1460Thr	p.A1460T	ENST00000357387	NM_152756.3	1460	Gca/Aca																																																																															
RASA1	5921	MSKCC	GRCh37	5	86648978	86648978	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	35	399	0	ENST00000274376.6:c.1261del	p.Asp421ThrfsTer3	p.D421Tfs*3	ENST00000274376	NM_002890.2	420	Ggg/gg																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225488	26225488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	44	192	1	ENST00000360408.1:c.106G>A	p.Val36Met	p.V36M	ENST00000360408	NM_003532.2	36	Gtg/Atg																																																																															
PIM1	5292	MSKCC	GRCh37	6	37140886	37140886	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	63	442	0	ENST00000373509.5:c.722C>A	p.Pro241His	p.P241H	ENST00000373509	NM_002648.3	241	cCt/cAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900060	151900060	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	64	620	1	ENST00000262189.6:c.4051delA	p.Arg1351GlyfsTer23	p.R1351Gfs*23	ENST00000262189	NM_170606.2	1351	Agg/gg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128206856	128206856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	57	332	0	ENST00000265960.3:c.1367C>T	p.Thr456Met	p.T456M	ENST00000265960	NM_001006617.1	456	aCg/aTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	314	690	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913283		P-0016786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	188	435	1	ENST00000263967.3:c.3129G>T	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atT																																																																															
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	185	410	1	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431460	121431460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	218	456	0	ENST00000257555.6:c.664A>C	p.Lys222Gln	p.K222Q	ENST00000257555		222	Aag/Cag																																																																															
CDH1	999	MSKCC	GRCh37	16	68842405	68842409	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGT	TGGGT	-			P-0016786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	224	654	1	ENST00000261769.5:c.467_471del	p.Trp156TyrfsTer10	p.W156Yfs*10	ENST00000261769	NM_004360.3	156	TGGGTt/t																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0016792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	154	311	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0016792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	195	399	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902838	1902838	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	293	575	0	ENST00000382891.5:c.457C>G	p.Gln153Glu	p.Q153E	ENST00000382891	NM_133335.3	153	Cag/Gag																																																																															
APC	324	MSKCC	GRCh37	5	112178655	112178655	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	75	388	0	ENST00000257430.4:c.7364A>C	p.Lys2455Thr	p.K2455T	ENST00000257430	NM_000038.5	2455	aAa/aCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	52	461	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0016797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1353	56	653	2	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579584	7579585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0016798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	302	407	0	ENST00000269305.4:c.102dupC	p.Pro36AlafsTer7	p.P36Afs*7	ENST00000269305	NM_001126112.2	34	-/C																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371683	55371683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	131	463	4	ENST00000297316.4:c.373C>T	p.Arg125Cys	p.R125C	ENST00000297316	NM_022454.3	125	Cgc/Tgc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610581	81610581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	165	350	0	ENST00000298171.2:c.2179G>A	p.Glu727Lys	p.E727K	ENST00000298171	NM_000369.2	727	Gag/Aag																																																																															
JUN	3725	MSKCC	GRCh37	1	59247761	59247761	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	122	408	0	ENST00000371222.2:c.982T>A	p.Leu328Met	p.L328M	ENST00000371222	NM_002228.3	328	Ttg/Atg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366966	15366966	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	139	477	0	ENST00000263377.2:c.1660A>T	p.Lys554Ter	p.K554*	ENST00000263377	NM_058243.2	554	Aaa/Taa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259284	36259298	+	inframe_deletion	In_Frame_Del	DEL	GCCGGCCAGGGCAGC	GCCGGCCAGGGCAGC	-			P-0016798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	83	317	1	ENST00000300305.3:c.193_207del	p.Ala65_Gly69del	p.A65_G69del	ENST00000300305		65	GCTGCCCTGGCCGGC/-																																																																															
RAC2	5880	MSKCC	GRCh37	22	37622771	37622771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	182	456	1	ENST00000249071.6:c.521G>A	p.Arg174Gln	p.R174Q	ENST00000249071	NM_002872.4	174	cGg/cAg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430258	181430258	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	81	271	0	ENST00000325404.1:c.110G>T	p.Ser37Ile	p.S37I	ENST00000325404	NM_003106.3	37	aGc/aTc																																																																															
APC	324	MSKCC	GRCh37	5	112176902	112176902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	52	357	0	ENST00000257430.4:c.5611G>A	p.Asp1871Asn	p.D1871N	ENST00000257430	NM_000038.5	1871	Gat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0016802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	17	192	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	34	314	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206842	36206846	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCG	GCTCG	-			P-0016802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	30	200	0	ENST00000300305.3:c.666_670del	p.Glu223AlafsTer3	p.E223Afs*3	ENST00000300305		222	tcCGAGCgg/tcgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	550	390	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	94	366	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0016810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	275	561	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188317	32188317	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144492578		P-0016810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	126	842	2	ENST00000375023.3:c.1024G>A	p.Val342Met	p.V342M	ENST00000375023	NM_004557.3	342	Gtg/Atg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600446	10600446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	14	958	2	ENST00000171111.5:c.1409G>A	p.Arg470His	p.R470H	ENST00000171111	NM_203500.1	470	cGt/cAt																																																																															
RHOA	387	MSKCC	GRCh37	3	49412958	49412958	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	136	1081	0	ENST00000418115.1:c.65T>G	p.Leu22Arg	p.L22R	ENST00000418115	NM_001664.2	22	cTc/cGc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117410	115117411	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0016810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	92	453	1	ENST00000257566.3:c.763_764del	p.Val255LysfsTer4	p.V255Kfs*4	ENST00000257566	NM_016569.3	255	GTa/a																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061096	38061096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	10	158	0	ENST00000250448.2:c.893C>T	p.Ser298Phe	p.S298F	ENST00000250448	NM_004496.3	298	tCt/tTt																																																																															
CDH1	999	MSKCC	GRCh37	16	68846148	68846185	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATCTTCAATCCCACCACGGTAATTCTATAACTCCTTA	GATCTTCAATCCCACCACGGTAATTCTATAACTCCTTA	-			P-0016810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	149	961	0	ENST00000261769.5:c.1121_1137+21del		p.X374_splice	ENST00000261769	NM_004360.3	374																																																																																
FOXL2	668	MSKCC	GRCh37	3	138664450	138664450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	130	495	0	ENST00000330315.3:c.1115C>T	p.Ser372Leu	p.S372L	ENST00000330315	NM_023067.3	372	tCg/tTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241737	55241737	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0016810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	145	542	0	ENST00000275493.2:c.2184+1G>T		p.X728_splice	ENST00000275493	NM_005228.3	728																																																																																
TP53	7157	MSKCC	GRCh37	17	7574026	7574026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	25	678	0	ENST00000269305.4:c.1001G>T	p.Gly334Val	p.G334V	ENST00000269305	NM_001126112.2	334	gGg/gTg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856313	111856313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	30	65	0	ENST00000341259.2:c.364G>A	p.Glu122Lys	p.E122K	ENST00000341259	NM_005475.2	122	Gag/Aag																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754323	57754501	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACCTTTCTTGCTTTCAAAATATGAGCCATTGACTAAGAAGAGGAGAAGGAAAAAAGAGAATCTGTCAAAACAGTTATCAAAATCACTGGTTTCCCTTTGCAGGATGAGCAATGAAAGTTAACTTTGCAGTGTAAGTGCTGCCACAGCTAAAATCCCAGATAAAATACTCTTTGAATAC	CACCTTTCTTGCTTTCAAAATATGAGCCATTGACTAAGAAGAGGAGAAGGAAAAAAGAGAATCTGTCAAAACAGTTATCAAAATCACTGGTTTCCCTTTGCAGGATGAGCAATGAAAGTTAACTTTGCAGTGTAAGTGCTGCCACAGCTAAAATCCCAGATAAAATACTCTTTGAATAC	-			P-0016813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	13	406	0	ENST00000274289.3:c.495+51_528del		p.X165_splice	ENST00000274289	NM_006622.3	165																																																																																
TAP1	6890	MSKCC	GRCh37	6	32821125	32821125	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	370	882	0	ENST00000354258.4:c.469A>T	p.Lys157Ter	p.K157*	ENST00000354258	NM_000593.5	157	Aag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0016816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	162	525	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126757	5126757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	106	603	2	ENST00000381652.3:c.3365G>A	p.Arg1122Gln	p.R1122Q	ENST00000381652	NM_004972.3	1122	cGa/cAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954019	32954019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	220	866	2	ENST00000380152.3:c.9086C>T	p.Ala3029Val	p.A3029V	ENST00000380152		3029	gCg/gTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103528231	103528231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	79	386	1	ENST00000355739.4:c.3539G>A	p.Arg1180Lys	p.R1180K	ENST00000355739	NM_000123.3	1180	aGg/aAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993108	72993108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	230	924	1	ENST00000268489.5:c.937G>A	p.Glu313Lys	p.E313K	ENST00000268489	NM_006885.3	313	Gag/Aag																																																																															
SOS1	6654	MSKCC	GRCh37	2	39224170	39224170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	114	540	0	ENST00000402219.2:c.2974G>A	p.Glu992Lys	p.E992K	ENST00000402219	NM_005633.3	992	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	80	641	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031171	11031171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	42	720	0	ENST00000327064.4:c.1256G>A	p.Arg419Gln	p.R419Q	ENST00000327064	NM_199141.1	419	cGg/cAg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457239	67457246	+	frameshift_variant	Frame_Shift_Del	DEL	GGATGGCC	GGATGGCC	-			P-0016817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	24	404	0	ENST00000327367.4:c.215_222del	p.Asp72ValfsTer36	p.D72Vfs*36	ENST00000327367	NM_005902.3	71	ctGGATGGCCgg/ctgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578523	7578542	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCAAAACATCTTGTTGAG	TGGCAAAACATCTTGTTGAG	-			P-0016817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	54	955	0	ENST00000269305.4:c.388_407del	p.Leu130ThrfsTer12	p.L130Tfs*12	ENST00000269305	NM_001126112.2	130	CTCAACAAGATGTTTTGCCAa/a																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229433	98229433	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	22	259	0	ENST00000331920.6:c.2525A>T	p.Lys842Ile	p.K842I	ENST00000331920	NM_000264.3	842	aAa/aTa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0016818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	152	497	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177011	56177014	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0016818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	116	305	0	ENST00000399503.3:c.2286_2289delTAGA	p.Arg763CysfsTer35	p.R763Cfs*35	ENST00000399503	NM_005921.1	761	ATAGat/at																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161175	56161176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0016818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	107	321	0	ENST00000399503.3:c.1047_1048dup	p.Ala350ValfsTer13	p.A350Vfs*13	ENST00000399503	NM_005921.1	348	-/TG																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545763	106545763	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	185	453	0	ENST00000359195.3:c.3240G>T	p.Trp1080Cys	p.W1080C	ENST00000359195	NM_002649.2	1080	tgG/tgT																																																																															
CDH1	999	MSKCC	GRCh37	16	68856020	68856020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	130	573	0	ENST00000261769.5:c.1828C>T	p.Gln610Ter	p.Q610*	ENST00000261769	NM_004360.3	610	Cag/Tag																																																																															
POLE	5426	MSKCC	GRCh37	12	133248848	133248876	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGGGCGTGGCGCAAGGTCTTCTCAACC	CAAGGGCGTGGCGCAAGGTCTTCTCAACC	-			P-0016819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	46	500	0	ENST00000320574.5:c.1719_1747del	p.Val574GlyfsTer14	p.V574Gfs*14	ENST00000320574	NM_006231.2	573	cgGGTTGAGAAGACCTTGCGCCACGCCCTTGag/cgag																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518615	103518615	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	28	254	0	ENST00000355739.4:c.2203G>C	p.Glu735Gln	p.E735Q	ENST00000355739	NM_000123.3	735	Gag/Cag																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22153354	22153354	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	71	427	0	ENST00000215832.6:c.556G>C	p.Glu186Gln	p.E186Q	ENST00000215832	NM_002745.4	186	Gaa/Caa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134825328	134825328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	70	225	0	ENST00000398015.3:c.844G>A	p.Glu282Lys	p.E282K	ENST00000398015	NM_004441.4	282	Gaa/Aaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184158	56184158	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	83	294	0	ENST00000399503.3:c.4363T>C	p.Ser1455Pro	p.S1455P	ENST00000399503	NM_005921.1	1455	Tcc/Ccc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589631	67589632	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATTATATGAAGA			P-0016819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	165	326	0	ENST00000274335.5:c.1397_1408dupTATATGAAGAAT	p.Leu466_Glu469dup	p.L466_E469dup	ENST00000274335		466	aga/agATTATATGAAGAa																																																																															
ARAF	369	MSKCC	GRCh37	X	47426051	47426051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	124	619	0	ENST00000377045.4:c.571C>T	p.His191Tyr	p.H191Y	ENST00000377045	NM_001654.4	191	Cac/Tac																																																																															
STAG2	10735	MSKCC	GRCh37	X	123191766	123191766	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	90	381	0	ENST00000218089.9:c.1355G>T	p.Gly452Val	p.G452V	ENST00000218089	NM_001042749.1	452	gGa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0016820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	25	670	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782177		P-0016820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	191	795	1	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0016822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	180	509	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0016822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	20	402	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	195	372	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0016822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	93	259	3	ENST00000342505.4:c.2580dupA	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																																																															
NF1	4763	MSKCC	GRCh37	17	29562734	29562734	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	336	383	0	ENST00000358273.4:c.3814C>T	p.Gln1272Ter	p.Q1272*	ENST00000358273	NM_001042492.2	1272	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	315	501	0	ENST00000269305.4:c.537T>A	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286205	66286205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	197	324	0	ENST00000273854.3:c.1481G>A	p.Arg494His	p.R494H	ENST00000273854	NM_004439.5	494	cGt/cAt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107909	30107909	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	29	429	0	ENST00000331968.5:c.898C>T	p.Gln300Ter	p.Q300*	ENST00000331968	NM_002742.2	300	Cag/Tag																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091740	29091740	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	277	265	0	ENST00000328354.6:c.1217G>T	p.Arg406Leu	p.R406L	ENST00000328354	NM_007194.3	406	cGt/cTt																																																																															
TP63	8626	MSKCC	GRCh37	3	189612039	189612039	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2660	904	447	0	ENST00000264731.3:c.1791C>G	p.Ile597Met	p.I597M	ENST00000264731	NM_003722.4	597	atC/atG																																																																															
TP63	8626	MSKCC	GRCh37	3	189612080	189612080	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2855	1002	493	0	ENST00000264731.3:c.1832C>G	p.Ser611Cys	p.S611C	ENST00000264731	NM_003722.4	611	tCc/tGc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057553	180057553	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0016827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	81	399	0	ENST00000261937.6:c.400+2T>C		p.X134_splice	ENST00000261937	NM_182925.4	134																																																																																
CDH1	999	MSKCC	GRCh37	16	68856050	68856050	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	590	590	0	ENST00000261769.5:c.1859delC	p.Pro620LeufsTer11	p.P620Lfs*11	ENST00000261769	NM_004360.3	620	Cct/ct																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56176970	56176973	+	frameshift_variant	Frame_Shift_Del	DEL	AATC	AATC	-			P-0016828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	288	265	0	ENST00000399503.3:c.2242_2245del	p.Ser748ThrfsTer13	p.S748Tfs*13	ENST00000399503	NM_005921.1	747	gAATCa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0016830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	438	869	3	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	540	726	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	309	696	2	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339175	65339175	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1180823763		P-0016830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	212	420	0	ENST00000342505.4:c.361G>A	p.Asp121Asn	p.D121N	ENST00000342505	NM_002227.2	121	Gac/Aac																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221084	5221084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	148	520	0	ENST00000357368.4:c.3382G>A	p.Val1128Ile	p.V1128I	ENST00000357368	NM_002850.3	1128	Gtc/Atc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435658	18435658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143896492		P-0016830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	110	354	0	ENST00000266497.5:c.643G>A	p.Gly215Arg	p.G215R	ENST00000266497		215	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112174736	112174736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	201	394	0	ENST00000257430.4:c.3445G>T	p.Glu1149Ter	p.E1149*	ENST00000257430	NM_000038.5	1149	Gaa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444231	49444231	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	171	892	0	ENST00000301067.7:c.3140T>C	p.Leu1047Pro	p.L1047P	ENST00000301067	NM_003482.3	1047	cTa/cCa																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965326	25965326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	57	531	0	ENST00000435504.4:c.3880C>T	p.Leu1294Phe	p.L1294F	ENST00000435504		1294	Ctt/Ttt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096526	178096526	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	36	292	1	ENST00000397062.3:c.805A>T	p.Asn269Tyr	p.N269Y	ENST00000397062	NM_006164.4	269	Aac/Tac																																																																															
MITF	4286	MSKCC	GRCh37	3	69998247	69998247	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	269	741	0	ENST00000352241.4:c.808C>G	p.Leu270Val	p.L270V	ENST00000352241	NM_198159.2	270	Ctg/Gtg																																																																															
APC	324	MSKCC	GRCh37	5	112175575	112175575	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	152	528	0	ENST00000257430.4:c.4284del	p.Gln1429LysfsTer44	p.Q1429Kfs*44	ENST00000257430	NM_000038.5	1428	ggA/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0016831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	285	480	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	172	560	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805287	89805287	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	G			P-0016831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	81	374	0	ENST00000389301.3:c.4260+3A>C		p.X1420_splice	ENST00000389301	NM_000135.2	1420																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151845721	151845721	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	219	494	0	ENST00000262189.6:c.13291A>G	p.Asn4431Asp	p.N4431D	ENST00000262189	NM_170606.2	4431	Aac/Gac																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0016833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	301	616	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602749	10602749	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	61	592	0	ENST00000171111.5:c.829A>C	p.Thr277Pro	p.T277P	ENST00000171111	NM_203500.1	277	Acg/Ccg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	283	547	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KDR	3791	MSKCC	GRCh37	4	55963925	55963925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	112	333	0	ENST00000263923.4:c.2518C>T	p.Leu840Phe	p.L840F	ENST00000263923	NM_002253.2	840	Ctt/Ttt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	137	437	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519942		P-0016840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	56	433	2	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041165	29041165	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	77	542	0	ENST00000282397.4:c.263del	p.Phe88SerfsTer5	p.F88Sfs*5	ENST00000282397	NM_002019.4	88	tTc/tc																																																																															
CBFB	865	MSKCC	GRCh37	16	67070573	67070573	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	96	284	0	ENST00000412916.2:c.197del	p.Leu66ProfsTer23	p.L66Pfs*23	ENST00000412916		66	cTc/cc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729858	41729858	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	85	348	0	ENST00000242208.4:c.671C>A	p.Ser224Tyr	p.S224Y	ENST00000242208	NM_002192.2	224	tCc/tAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878375	151878375	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	100	437	0	ENST00000262189.6:c.6570del	p.Phe2190LeufsTer5	p.F2190Lfs*5	ENST00000262189	NM_170606.2	2190	ttT/tt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0016841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	74	432	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																															
CDH1	999	MSKCC	GRCh37	16	68842603	68842603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	99	496	0	ENST00000261769.5:c.539C>T	p.Ser180Phe	p.S180F	ENST00000261769	NM_004360.3	180	tCc/tTc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627742	37627742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	47	740	0	ENST00000447079.4:c.1657C>T	p.Pro553Ser	p.P553S	ENST00000447079	NM_015083.1	553	Cct/Tct																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212134	5212134	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	60	534	4	ENST00000357368.4:c.4897C>T	p.Gln1633Ter	p.Q1633*	ENST00000357368	NM_002850.3	1633	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	93	773	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943641	9943641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	95	738	2	ENST00000330684.3:c.1300G>A	p.Val434Met	p.V434M	ENST00000330684	NM_001134407.1	434	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577137	7577137	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	280	797	0	ENST00000269305.4:c.801del	p.Asn268ThrfsTer77	p.N268Tfs*77	ENST00000269305	NM_001126112.2	267	cgG/cg																																																																															
APC	324	MSKCC	GRCh37	5	112137081	112137081	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0016847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	25	432	0	ENST00000257430.4:c.834+1G>C		p.X278_splice	ENST00000257430	NM_000038.5	278																																																																																
CXCR4	7852	MSKCC	GRCh37	2	136873032	136873032	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	40	400	0	ENST00000241393.3:c.466G>T	p.Val156Phe	p.V156F	ENST00000241393	NM_003467.2	156	Gtc/Ttc																																																																															
APC	324	MSKCC	GRCh37	5	112174759	112174762	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0016847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	30	470	0	ENST00000257430.4:c.3471_3474del	p.Glu1157AspfsTer7	p.E1157Dfs*7	ENST00000257430	NM_000038.5	1156	gaAGAG/ga																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127912013	127912013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	39	506	0	ENST00000373547.4:c.857G>T	p.Arg286Leu	p.R286L	ENST00000373547	NM_002721.4	286	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	103	756	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0016850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	75	625	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	111	634	1	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	64	568	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	119	752	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45805907	45805907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	96	547	3	ENST00000372115.3:c.20G>A	p.Arg7His	p.R7H	ENST00000372115	NM_001048171.1	7	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5243984	5243984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	46	534	2	ENST00000357368.4:c.1498C>T	p.Arg500Trp	p.R500W	ENST00000357368	NM_002850.3	500	Cgg/Tgg																																																																															
MITF	4286	MSKCC	GRCh37	3	69928292	69928292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	107	473	0	ENST00000352241.4:c.112G>A	p.Ala38Thr	p.A38T	ENST00000352241	NM_198159.2	38	Gcc/Acc																																																																															
HGF	3082	MSKCC	GRCh37	7	81358979	81358979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	92	726	3	ENST00000222390.5:c.982C>T	p.Arg328Cys	p.R328C	ENST00000222390	NM_000601.4	328	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0016852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	107	638	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249037	55249038	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0016852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	328	526	2	ENST00000275493.2:c.2335_2336delinsTT	p.Gly779Phe	p.G779F	ENST00000275493	NM_005228.3	779	GGc/TTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189379	56189379	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	110	581	0	ENST00000399503.3:c.4411C>A	p.Pro1471Thr	p.P1471T	ENST00000399503	NM_005921.1	1471	Cca/Aca																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733341	85733341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	170	631	1	ENST00000370580.1:c.671C>T	p.Pro224Leu	p.P224L	ENST00000370580	NM_003921.4	224	cCc/cTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892140	9892140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	97	582	0	ENST00000330684.3:c.2350G>T	p.Gly784Cys	p.G784C	ENST00000330684	NM_001134407.1	784	Ggt/Tgt																																																																															
ALK	238	MSKCC	GRCh37	2	29754901	29754901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	33	347	0	ENST00000389048.3:c.1034G>A	p.Cys345Tyr	p.C345Y	ENST00000389048	NM_004304.4	345	tGc/tAc																																																																															
ALK	238	MSKCC	GRCh37	2	29917835	29917835	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	124	717	1	ENST00000389048.3:c.833del	p.Pro278LeufsTer57	p.P278Lfs*57	ENST00000389048	NM_004304.4	278	cCt/ct																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185161387	185161387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	96	577	1	ENST00000265026.3:c.814C>T	p.Leu272Phe	p.L272F	ENST00000265026	NM_004721.4	272	Ctc/Ttc																																																																															
HGF	3082	MSKCC	GRCh37	7	81358956	81358956	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	126	555	0	ENST00000222390.5:c.1005C>A	p.His335Gln	p.H335Q	ENST00000222390	NM_000601.4	335	caC/caA																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020347	69020347	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	170	465	0	ENST00000288368.4:c.2719T>A	p.Ser907Thr	p.S907T	ENST00000288368	NM_024870.2	907	Tct/Act																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	69	547	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68862174	68862174	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	50	702	0	ENST00000261769.5:c.2262del	p.Tyr755MetfsTer15	p.Y755Mfs*15	ENST00000261769	NM_004360.3	754	taC/ta																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343903	118343903	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	146	364	0	ENST00000534358.1:c.2029C>T	p.Arg677Ter	p.R677*	ENST00000534358	NM_005933.3	677	Cga/Tga																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81925143	81925143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	84	461	1	ENST00000359376.3:c.934C>A	p.Gln312Lys	p.Q312K	ENST00000359376	NM_002661.3	312	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0016866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	276	520	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																															
CD79B	974	MSKCC	GRCh37	17	62007713	62007713	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	116	251	0	ENST00000392795.3:c.154C>G	p.Arg52Gly	p.R52G	ENST00000392795	NM_001039933.1	52	Cgt/Ggt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222767	5222851	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTCGCACTTGGAGGTCATAGGCCGTGTCGGGCTTCAGGCCCTGCAGCGTGAGCGCGTTCTCCGCGCCCGGCTCAGCCGCTGCC	GGCTCGCACTTGGAGGTCATAGGCCGTGTCGGGCTTCAGGCCCTGCAGCGTGAGCGCGTTCTCCGCGCCCGGCTCAGCCGCTGCC	-			P-0016866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	61	522	1	ENST00000357368.4:c.2952_3036del	p.Ala985ThrfsTer30	p.A985Tfs*30	ENST00000357368	NM_002850.3	984	ccGGCAGCGGCTGAGCCGGGCGCGGAGAACGCGCTCACGCTGCAGGGCCTGAAGCCCGACACGGCCTATGACCTCCAAGTGCGAGCC/cc																																																																															
EP300	2033	MSKCC	GRCh37	22	41566556	41566556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	64	319	2	ENST00000263253.7:c.4433G>A	p.Arg1478His	p.R1478H	ENST00000263253	NM_001429.3	1478	cGt/cAt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056638	26056638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	26	152	0	ENST00000343677.2:c.19G>A	p.Ala7Thr	p.A7T	ENST00000343677	NM_005319.3	7	Gcc/Acc																																																																															
HGF	3082	MSKCC	GRCh37	7	81359060	81359060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	95	419	0	ENST00000222390.5:c.901G>A	p.Glu301Lys	p.E301K	ENST00000222390	NM_000601.4	301	Gaa/Aaa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508083	106508083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	29	141	0	ENST00000359195.3:c.77G>A	p.Arg26His	p.R26H	ENST00000359195	NM_002649.2	26	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	170	636	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	57	517	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991910	72991910	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	41	391	2	ENST00000268489.5:c.2135G>T	p.Arg712Leu	p.R712L	ENST00000268489	NM_006885.3	712	cGg/cTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100073	27100074	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CG	CG	TT			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	44	492	1	ENST00000324856.7:c.3869_3870delinsTT	p.Thr1290Ile	p.T1290I	ENST00000324856	NM_006015.4	1290	aCG/aTT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106724	27106724	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	52	490	0	ENST00000324856.7:c.6337del	p.Ser2113ProfsTer22	p.S2113Pfs*22	ENST00000324856	NM_006015.4	2112	cTt/ct																																																																															
MPL	4352	MSKCC	GRCh37	1	43805047	43805047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	51	536	1	ENST00000372470.3:c.497G>A	p.Arg166Lys	p.R166K	ENST00000372470	NM_005373.2	166	aGg/aAg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999596	100999597	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	93	640	1	ENST00000325455.5:c.205_206delinsAA	p.Pro69Asn	p.P69N	ENST00000325455	NM_001202474.3	69	CCc/AAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641541	18641541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	53	409	0	ENST00000266497.5:c.2540C>A	p.Ser847Tyr	p.S847Y	ENST00000266497		847	tCt/tAt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230371	46230371	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	65	262	0	ENST00000334344.6:c.706-1G>A		p.X236_splice	ENST00000334344	NM_152641.2	236																																																																																
AXIN1	8312	MSKCC	GRCh37	16	396242	396242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	70	470	4	ENST00000262320.3:c.784G>A	p.Ala262Thr	p.A262T	ENST00000262320	NM_003502.3	262	Gct/Act																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81954848	81954848	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	65	548	0	ENST00000359376.3:c.2281G>C	p.Asp761His	p.D761H	ENST00000359376	NM_002661.3	761	Gat/Cat																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46281148	46281148	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	35	365	1	ENST00000371998.3:c.3947-2A>T		p.X1316_splice	ENST00000371998		1316																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134670687	134670687	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	56	448	2	ENST00000398015.3:c.598G>T	p.Val200Leu	p.V200L	ENST00000398015	NM_004441.4	200	Gtg/Ttg																																																																															
TET2	54790	MSKCC	GRCh37	4	106196606	106196606	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	59	410	0	ENST00000380013.4:c.4939G>T	p.Gly1647Cys	p.G1647C	ENST00000380013	NM_001127208.2	1647	Ggt/Tgt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176639144	176639144	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	106	495	0	ENST00000439151.2:c.3744A>T	p.Glu1248Asp	p.E1248D	ENST00000439151	NM_022455.4	1248	gaA/gaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	196	541	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11259353	11259353	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	67	437	0	ENST00000361445.4:c.4215G>C	p.Gln1405His	p.Q1405H	ENST00000361445	NM_004958.3	1405	caG/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	162	577	0	ENST00000269305.4:c.800G>C	p.Arg267Pro	p.R267P	ENST00000269305	NM_001126112.2	267	cGg/cCg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468258	120468258	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	78	391	0	ENST00000256646.2:c.4181A>T	p.Gln1394Leu	p.Q1394L	ENST00000256646	NM_024408.3	1394	cAg/cTg																																																																															
SESN3	143686	MSKCC	GRCh37	11	94906474	94906474	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	67	442	0	ENST00000536441.1:c.1424G>C	p.Arg475Pro	p.R475P	ENST00000536441	NM_144665.3	475	cGa/cCa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483937	88483937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	60	466	0	ENST00000360948.2:c.1633G>A	p.Gly545Ser	p.G545S	ENST00000360948	NM_001012338.2	545	Ggt/Agt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99451967	99451967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	97	407	0	ENST00000268035.6:c.1301G>T	p.Trp434Leu	p.W434L	ENST00000268035	NM_000875.3	434	tGg/tTg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7978963	7978963	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	75	502	0	ENST00000319144.4:c.1604C>G	p.Ser535Cys	p.S535C	ENST00000319144	NM_001139.2	535	tCt/tGt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243027	41243027	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	91	537	0	ENST00000357654.3:c.4119G>C	p.Glu1373Asp	p.E1373D	ENST00000357654	NM_007294.3	1373	gaG/gaC																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120284	70120284	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	107	751	1	ENST00000245479.2:c.1286G>T	p.Ser429Ile	p.S429I	ENST00000245479	NM_000346.3	429	aGc/aTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602698	10602698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	162	612	3	ENST00000171111.5:c.880G>T	p.Asp294Tyr	p.D294Y	ENST00000171111	NM_203500.1	294	Gac/Tac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521695	89521695	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	86	450	0	ENST00000336596.2:c.2772G>T	p.Trp924Cys	p.W924C	ENST00000336596	NM_005233.5	924	tgG/tgT																																																																															
KDR	3791	MSKCC	GRCh37	4	55946160	55946160	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	47	292	0	ENST00000263923.4:c.4019C>A	p.Ala1340Asp	p.A1340D	ENST00000263923	NM_002253.2	1340	gCc/gAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217211	66217211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	66	445	0	ENST00000273854.3:c.2404G>T	p.Ala802Ser	p.A802S	ENST00000273854	NM_004439.5	802	Gct/Tct																																																																															
TERT	7015	MSKCC	GRCh37	5	1280292	1280292	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	194	638	0	ENST00000310581.5:c.1931C>A	p.Thr644Lys	p.T644K	ENST00000310581	NM_198253.2	644	aCg/aAg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38959941	38959941	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	51	314	0	ENST00000357387.3:c.1991G>T	p.Gly664Val	p.G664V	ENST00000357387	NM_152756.3	664	gGa/gTa																																																																															
E2F3	1871	MSKCC	GRCh37	6	20490443	20490443	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	239	446	0	ENST00000346618.3:c.1180A>G	p.Met394Val	p.M394V	ENST00000346618	NM_001949.4	394	Atg/Gtg																																																																															
SMO	6608	MSKCC	GRCh37	7	128846097	128846097	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	196	623	0	ENST00000249373.3:c.1027T>G	p.Phe343Val	p.F343V	ENST00000249373	NM_005631.4	343	Ttc/Gtc																																																																															
BRAF	673	MSKCC	GRCh37	7	140501356	140501356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	44	352	0	ENST00000288602.6:c.716G>T	p.Arg239Leu	p.R239L	ENST00000288602	NM_004333.4	239	cGa/cTa																																																																															
ATRX	546	MSKCC	GRCh37	X	76937961	76937961	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	140	237	0	ENST00000373344.5:c.2787G>C	p.Gln929His	p.Q929H	ENST00000373344	NM_000489.3	929	caG/caC																																																																															
ATRX	546	MSKCC	GRCh37	X	76938232	76938232	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	133	273	0	ENST00000373344.5:c.2516A>C	p.Lys839Thr	p.K839T	ENST00000373344	NM_000489.3	839	aAa/aCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	64	454	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0016870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	62	304	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108235838	108235838	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	38	360	0	ENST00000278616.4:c.8880G>T	p.Trp2960Cys	p.W2960C	ENST00000278616	NM_000051.3	2960	tgG/tgT																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870853	12870853	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	31	111	0	ENST00000228872.4:c.80C>A	p.Ser27Ter	p.S27*	ENST00000228872	NM_004064.3	27	tCg/tAg																																																																															
MGA	23269	MSKCC	GRCh37	15	42019443	42019443	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	38	451	1	ENST00000219905.7:c.3496G>T	p.Glu1166Ter	p.E1166*	ENST00000219905	NM_001164273.1	1166	Gaa/Taa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670886	134670886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	16	158	0	ENST00000398015.3:c.797C>T	p.Ala266Val	p.A266V	ENST00000398015	NM_004441.4	266	gCa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	29	633	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0016873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	29	545	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
WT1	7490	MSKCC	GRCh37	11	32414297	32414297	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	29	353	0	ENST00000332351.3:c.1254G>C	p.Glu418Asp	p.E418D	ENST00000332351	NM_024426.4	418	gaG/gaC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907119	32907120	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0016873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	37	521	1	ENST00000380152.3:c.1507_1508del	p.Lys503ValfsTer10	p.K503Vfs*10	ENST00000380152		502	AAa/a																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46603751	46603751	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	39	752	1	ENST00000263734.3:c.1108A>G	p.Met370Val	p.M370V	ENST00000263734	NM_001430.4	370	Atg/Gtg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0016875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	50	479	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	73	529	0	ENST00000269305.4:c.823T>C	p.Cys275Arg	p.C275R	ENST00000269305	NM_001126112.2	275	Tgt/Cgt																																																																															
CIC	23152	MSKCC	GRCh37	19	42799156	42799156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	62	502	0	ENST00000575354.2:c.4640C>T	p.Pro1547Leu	p.P1547L	ENST00000575354	NM_015125.3	1547	cCt/cTt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261381	16261382	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0016875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	62	435	0	ENST00000375759.3:c.8647_8648dup	p.Ser2884IlefsTer6	p.S2884Ifs*6	ENST00000375759	NM_015001.2	2882	-/CA																																																																															
CARM1	10498	MSKCC	GRCh37	19	11032332	11032332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	62	441	0	ENST00000327064.4:c.1726G>A	p.Ala576Thr	p.A576T	ENST00000327064	NM_199141.1	576	Gcc/Acc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93973618	93973618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	39	415	0	ENST00000369303.4:c.1758C>A	p.Ser586Arg	p.S586R	ENST00000369303	NM_004440.3	586	agC/agA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0016876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	114	425	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061185	38061202	+	inframe_deletion	In_Frame_Del	DEL	GCACTTGAAGCGCTTCTG	GCACTTGAAGCGCTTCTG	-			P-0016876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	93	252	0	ENST00000250448.2:c.787_804del	p.Gln263_Cys268del	p.Q263_C268del	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTCAAGTGC/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577567	7577567	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	320	379	0	ENST00000269305.4:c.714T>G	p.Cys238Trp	p.C238W	ENST00000269305	NM_001126112.2	238	tgT/tgG																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868157	56868157	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	81	366	0	ENST00000308159.5:c.1655A>G	p.Tyr552Cys	p.Y552C	ENST00000308159	NM_014669.4	552	tAt/tGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	132	313	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453145	140453145	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	25	355	0	ENST00000288602.6:c.1790T>G	p.Leu597Arg	p.L597R	ENST00000288602	NM_004333.4	597	cTa/cGa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900715	32900715	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	164	415	0	ENST00000380152.3:c.596C>G	p.Ala199Gly	p.A199G	ENST00000380152		199	gCt/gGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	340	550	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267481	198267481	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs769888451		P-0016884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	102	503	0	ENST00000335508.6:c.1876A>G	p.Asn626Asp	p.N626D	ENST00000335508	NM_012433.2	626	Aac/Gac																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577274	64577275	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGTCGGC			P-0016888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	157	560	0	ENST00000337652.1:c.307_308insGCCGACC	p.Leu103ArgfsTer16	p.L103Rfs*16	ENST00000337652	NM_130803.2	103	ctg/cGCCGACCtg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18274164	18274164	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	258	715	0	ENST00000222254.8:c.1382A>T	p.Asp461Val	p.D461V	ENST00000222254	NM_005027.3	461	gAc/gTc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271226	38271226	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2203	154	540	0	ENST00000425967.3:c.2482T>G	p.Ser828Ala	p.S828A	ENST00000425967	NM_001174067.1	828	Tct/Gct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	293	604	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40727077	40727077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	11	384	0	ENST00000373198.4:c.3887A>T	p.Glu1296Val	p.E1296V	ENST00000373198	NM_133170.3	1296	gAg/gTg																																																																															
ATM	472	MSKCC	GRCh37	11	108098600	108098600	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	104	242	2	ENST00000278616.4:c.170G>T	p.Trp57Leu	p.W57L	ENST00000278616	NM_000051.3	57	tGg/tTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257336	16257336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	65	589	1	ENST00000375759.3:c.4601C>T	p.Ser1534Leu	p.S1534L	ENST00000375759	NM_015001.2	1534	tCa/tTa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115980	8115980	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	41	208	0	ENST00000346208.3:c.1326G>C	p.Met442Ile	p.M442I	ENST00000346208		442	atG/atC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426895	49426895	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	31	262	0	ENST00000301067.7:c.11593C>T	p.Gln3865Ter	p.Q3865*	ENST00000301067	NM_003482.3	3865	Caa/Taa																																																																															
MGA	23269	MSKCC	GRCh37	15	41961579	41961579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	42	414	0	ENST00000219905.7:c.487C>T	p.Pro163Ser	p.P163S	ENST00000219905	NM_001164273.1	163	Cct/Tct																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88669511	88669511	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	21	551	0	ENST00000360948.2:c.1387G>T	p.Gly463Ter	p.G463*	ENST00000360948	NM_001012338.2	463	Gga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31019171	31019171	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	101	616	0	ENST00000375687.4:c.766G>T	p.Gly256Trp	p.G256W	ENST00000375687	NM_015338.5	256	Ggg/Tgg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264746	46264746	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	33	432	1	ENST00000371998.3:c.1616C>G	p.Ser539Cys	p.S539C	ENST00000371998		539	tCt/tGt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098781	47098782	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	98	558	0	ENST00000409792.3:c.6492dup	p.Ala2165CysfsTer19	p.A2165Cfs*19	ENST00000409792	NM_014159.6	2164	-/T																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748320	41748320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	25	628	0	ENST00000226382.2:c.449G>A	p.Arg150His	p.R150H	ENST00000226382	NM_003924.3	150	cGc/cAc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007374	143007374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	21	258	0	ENST00000262992.4:c.2410G>C	p.Ala804Pro	p.A804P	ENST00000262992	NM_001101669.1	804	Gca/Cca																																																																															
APC	324	MSKCC	GRCh37	5	112176806	112176806	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	39	385	0	ENST00000257430.4:c.5515G>C	p.Ala1839Pro	p.A1839P	ENST00000257430	NM_000038.5	1839	Gct/Cct																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53247141	53247167	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCACAATCTGAAAAAACAAGTAGGAA	ACCACAATCTGAAAAAACAAGTAGGAA	-			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	36	413	0	ENST00000375401.3:c.352-19_359del		p.X118_splice	ENST00000375401	NM_004187.3	118																																																																																
PTEN	5728	MSKCC	GRCh37	10	89692991	89692993	+	missense_variant	Missense_Mutation	ONP	AGG	AGG	TGC			P-0016893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	184	390	0	ENST00000371953.3:c.475_477delinsTGC	p.Arg159Cys	p.R159C	ENST00000371953	NM_000314.4	159	AGG/TGC																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330467	65330468	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0016895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	38	388	0	ENST00000342505.4:c.1176+2dup		p.X392_splice	ENST00000342505	NM_002227.2	392																																																																																
PTEN	5728	MSKCC	GRCh37	10	89717715	89717716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0016895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	104	490	1	ENST00000371953.3:c.741_742insAA	p.Pro248AsnfsTer9	p.P248Nfs*9	ENST00000371953	NM_000314.4	247	tta/ttAAa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70971044	70971044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1458	88	834	0	ENST00000276594.2:c.1217G>A	p.Gly406Glu	p.G406E	ENST00000276594	NM_024504.3	406	gGg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578400	7578400	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs751477326		P-0016905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	118	342	0	ENST00000269305.4:c.530C>G	p.Pro177Arg	p.P177R	ENST00000269305	NM_001126112.2	177	cCc/cGc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37884145	37884145	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	80	542	0	ENST00000269571.5:c.3616C>G	p.Gln1206Glu	p.Q1206E	ENST00000269571		1206	Cag/Gag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	96	404	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953529	32953529	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs4987047		P-0016906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	103	523	0	ENST00000380152.3:c.8830A>T	p.Ile2944Phe	p.I2944F	ENST00000380152		2944	Atc/Ttc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110073	115110073	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	165	651	0	ENST00000257566.3:c.1805del	p.Pro602LeufsTer30	p.P602Lfs*30	ENST00000257566	NM_016569.3	602	cCt/ct																																																																															
CDH1	999	MSKCC	GRCh37	16	68857396	68857397	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0016906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	178	565	0	ENST00000261769.5:c.2033_2034dup	p.Thr679Ter	p.T679*	ENST00000261769	NM_004360.3	677	-/GT																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231824	36231830	+	frameshift_variant	Frame_Shift_Del	DEL	GCGACTT	GCGACTT	-			P-0016906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1276	119	555	0	ENST00000300305.3:c.554_560del	p.Gln185ProfsTer24	p.Q185Pfs*24	ENST00000300305		185	cAAGTCGCc/cc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180512	56180512	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	101	314	0	ENST00000399503.3:c.3841del	p.Ser1281LeufsTer7	p.S1281Lfs*7	ENST00000399503	NM_005921.1	1281	Tct/ct																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0016911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	378	487	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717695	89717695	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	140	420	1	ENST00000371953.3:c.720C>G	p.Tyr240Ter	p.Y240*	ENST00000371953	NM_000314.4	240	taC/taG																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129189	64129189	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	147	443	0	ENST00000334205.4:c.727G>T	p.Glu243Ter	p.E243*	ENST00000334205	NM_003942.2	243	Gag/Tag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060711	38060711	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0016914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1343	80	629	0	ENST00000250448.2:c.1278C>G	p.Tyr426Ter	p.Y426*	ENST00000250448	NM_004496.3	426	taC/taG																																																																															
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0016919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	121	357	1	ENST00000269305.4:c.993+2T>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
ALK	238	MSKCC	GRCh37	2	30143090	30143090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	173	536	0	ENST00000389048.3:c.436G>A	p.Gly146Ser	p.G146S	ENST00000389048	NM_004304.4	146	Ggc/Agc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480492	89480492	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	61	204	2	ENST00000336596.2:c.2329G>T	p.Ala777Ser	p.A777S	ENST00000336596	NM_005233.5	777	Gct/Tct																																																																															
ATM	472	MSKCC	GRCh37	11	108199837	108199837	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	239	382	0	ENST00000278616.4:c.7179T>G	p.Phe2393Leu	p.F2393L	ENST00000278616	NM_000051.3	2393	ttT/ttG																																																																															
ATM	472	MSKCC	GRCh37	11	108200960	108200960	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	409	287	0	ENST00000278616.4:c.7327C>T	p.Arg2443Ter	p.R2443*	ENST00000278616	NM_000051.3	2443	Cga/Tga																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18716407	18716407	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	294	424	0	ENST00000266497.5:c.3754C>G	p.Gln1252Glu	p.Q1252E	ENST00000266497		1252	Cag/Gag																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23539021	23539021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	264	387	0	ENST00000380871.4:c.418G>A	p.Glu140Lys	p.E140K	ENST00000380871	NM_006167.3	140	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	177	483	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0016924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	165	609	2	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0016930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	21	520	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98224273	98224273	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	30	182	0	ENST00000331920.6:c.2568G>T	p.Gln856His	p.Q856H	ENST00000331920	NM_000264.3	856	caG/caT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	257	656	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578410	7578410	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	646	511	0	ENST00000269305.4:c.520A>T	p.Arg174Trp	p.R174W	ENST00000269305	NM_001126112.2	174	Agg/Tgg																																																																															
MET	4233	MSKCC	GRCh37	7	116435984	116435984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	309	637	2	ENST00000397752.3:c.3979C>T	p.Arg1327Cys	p.R1327C	ENST00000397752	NM_000245.2	1327	Cgc/Tgc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67660469	67660469	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	100	326	0	ENST00000264010.4:c.1369C>T	p.Arg457Ter	p.R457*	ENST00000264010	NM_006565.3	457	Cga/Tga																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175857	24175859	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0016932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	440	494	0	ENST00000263121.7:c.1091_1093del	p.Lys364del	p.K364del	ENST00000263121	NM_003073.3	362	gAGAag/gag																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	213	249	1	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812292	212812292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	133	480	1	ENST00000342788.4:c.284G>A	p.Arg95His	p.R95H	ENST00000342788	NM_005235.2	95	cGt/cAt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225264		P-0016932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	348	397	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174418	11174418	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	625	651	0	ENST00000361445.4:c.7257A>T	p.Glu2419Asp	p.E2419D	ENST00000361445	NM_004958.3	2419	gaA/gaT																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514526	103514526	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	91	273	0	ENST00000355739.4:c.1027A>T	p.Arg343Ter	p.R343*	ENST00000355739	NM_000123.3	343	Aga/Tga																																																																															
INSR	3643	MSKCC	GRCh37	19	7267614	7267614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	311	699	1	ENST00000302850.5:c.394G>A	p.Gly132Ser	p.G132S	ENST00000302850	NM_000208.2	132	Ggc/Agc																																																																															
RRAS	6237	MSKCC	GRCh37	19	50138876	50138876	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	916	904	2	ENST00000246792.3:c.614C>A	p.Ala205Asp	p.A205D	ENST00000246792	NM_006270.3	205	gCc/gAc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266611	198266611	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs755415626		P-0016933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	109	443	0	ENST00000335508.6:c.2225G>A	p.Gly742Asp	p.G742D	ENST00000335508	NM_012433.2	742	gGt/gAt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2199938	2199938	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0016933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	98	543	0	ENST00000398665.3:c.707G>C	p.Ser236Thr	p.S236T	ENST00000398665	NM_032482.2	236	aGt/aCt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	307	399	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	454	592	3	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107234	27107234	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	240	357	0	ENST00000324856.7:c.6845T>C	p.Ile2282Thr	p.I2282T	ENST00000324856	NM_006015.4	2282	aTt/aCt																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374909	149374909	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	280	552	0	ENST00000360632.3:c.185C>G	p.Ser62Trp	p.S62W	ENST00000360632	NM_015472.4	62	tCg/tGg																																																																															
NF1	4763	MSKCC	GRCh37	17	29559090	29559090	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	35	65	0	ENST00000358273.4:c.3198-1G>C		p.X1066_splice	ENST00000358273	NM_001042492.2	1066																																																																																
CARD11	84433	MSKCC	GRCh37	7	2976761	2976761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	786	685	0	ENST00000396946.4:c.1251G>A	p.Met417Ile	p.M417I	ENST00000396946	NM_032415.4	417	atG/atA																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287202	46287202	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	235	301	0	ENST00000334344.6:c.5148-1G>T		p.X1716_splice	ENST00000334344	NM_152641.2	1716																																																																																
KNSTRN	90417	MSKCC	GRCh37	15	40675231	40675231	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	165	519	0	ENST00000249776.8:c.195C>G	p.Asp65Glu	p.D65E	ENST00000249776	NM_033286.3	65	gaC/gaG																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81819632	81819632	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	118	477	0	ENST00000359376.3:c.38A>C	p.Tyr13Ser	p.Y13S	ENST00000359376	NM_002661.3	13	tAt/tCt																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728565	190728565	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	182	756	0	ENST00000441310.2:c.1958del	p.Lys653ArgfsTer2	p.K653Rfs*2	ENST00000441310	NM_000534.4	651	agA/ag																																																																															
SRC	6714	MSKCC	GRCh37	20	36022629	36022629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	248	732	0	ENST00000358208.4:c.502G>A	p.Ala168Thr	p.A168T	ENST00000358208		168	Gca/Aca																																																																															
TET2	54790	MSKCC	GRCh37	4	106190798	106190798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	133	441	3	ENST00000380013.4:c.4076G>A	p.Arg1359His	p.R1359H	ENST00000380013	NM_001127208.2	1359	cGt/cAt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609960	117609998	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTCACCTGTGAAAAAAATATGAATGTTATTCTAGCATG	CTTCACCTGTGAAAAAAATATGAATGTTATTCTAGCATG	TTATTTATTATT			P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	108	417	4	ENST00000368508.3:c.6734-33_6739delinsAATAATAAATAA		p.X2245_splice	ENST00000368508	NM_002944.2	2245																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	58	399	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68835761	68835762	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	56	537	0	ENST00000261769.5:c.353dup	p.Val119SerfsTer49	p.V119Sfs*49	ENST00000261769	NM_004360.3	118	aca/aCca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	76	453	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	63	392	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912168	114912168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	86	615	0	ENST00000543371.1:c.1238T>C	p.Leu413Pro	p.L413P	ENST00000543371	NM_001198531.1	413	cTg/cCg																																																																															
WT1	7490	MSKCC	GRCh37	11	32449577	32449577	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	297	829	2	ENST00000332351.3:c.797del	p.Pro266ArgfsTer20	p.P266Rfs*20	ENST00000332351	NM_024426.4	266	cCg/cg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942053	71942053	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	74	1041	1	ENST00000298229.2:c.1322delA	p.Asn441ThrfsTer2	p.N441Tfs*2	ENST00000298229	NM_001567.3	439	ccA/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420745	49420745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	81	584	1	ENST00000301067.7:c.15004C>T	p.Arg5002Trp	p.R5002W	ENST00000301067	NM_003482.3	5002	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438067	49438067	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	128	683	2	ENST00000301067.7:c.5104C>T	p.Arg1702Ter	p.R1702*	ENST00000301067	NM_003482.3	1702	Cga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117358	115117359	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	92	565	0	ENST00000257566.3:c.815dup	p.Leu272PhefsTer6	p.L272Ffs*6	ENST00000257566	NM_016569.3	272	ttg/ttTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133237591	133237591	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	74	682	0	ENST00000320574.5:c.3024G>T	p.Lys1008Asn	p.K1008N	ENST00000320574	NM_006231.2	1008	aaG/aaT																																																																															
BLM	641	MSKCC	GRCh37	15	91290624	91290624	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	111	686	0	ENST00000355112.3:c.2T>C	p.Met1?	p.M1?	ENST00000355112	NM_000057.2	1	aTg/aCg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3823846	3823846	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	129	593	0	ENST00000262367.5:c.2369A>G	p.Gln790Arg	p.Q790R	ENST00000262367	NM_004380.2	790	cAg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577111	7577111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	50	851	0	ENST00000269305.4:c.827C>G	p.Ala276Gly	p.A276G	ENST00000269305	NM_001126112.2	276	gCc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	111	579	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs786201057		P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	73	593	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8111101	8111101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	100	628	1	ENST00000585124.1:c.106C>T	p.Pro36Ser	p.P36S	ENST00000585124	NM_004217.3	36	Cca/Tca																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374887	45374887	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	198	883	0	ENST00000262160.6:c.956T>C	p.Val319Ala	p.V319A	ENST00000262160	NM_005901.5	319	gTt/gCt																																																																															
GNA11	2767	MSKCC	GRCh37	19	3119208	3119208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	187	805	0	ENST00000078429.4:c.740G>A	p.Arg247Gln	p.R247Q	ENST00000078429	NM_002067.2	247	cGg/cAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	112	667	3	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222762	5222762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	39	743	1	ENST00000357368.4:c.3041C>T	p.Thr1014Met	p.T1014M	ENST00000357368	NM_002850.3	1014	aCg/aTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231528	5231528	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	36	682	0	ENST00000357368.4:c.1948del	p.Ala650ProfsTer22	p.A650Pfs*22	ENST00000357368	NM_002850.3	650	Gcc/cc																																																																															
INSR	3643	MSKCC	GRCh37	19	7128965	7128965	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	123	625	0	ENST00000302850.5:c.2843T>C	p.Leu948Ser	p.L948S	ENST00000302850	NM_000208.2	948	tTa/tCa																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14629033	14629035	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	144	641	0	ENST00000254322.2:c.127_129del	p.Glu43del	p.E43del	ENST00000254322	NM_006145.1	43	GAG/-																																																																															
JAK3	3718	MSKCC	GRCh37	19	17941318	17941318	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	84	563	0	ENST00000458235.1:c.3090del	p.Ser1031ArgfsTer7	p.S1031Rfs*7	ENST00000458235	NM_000215.3	1030	ccC/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224124	36224124	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	176	909	1	ENST00000222270.7:c.6678delC	p.Thr2227ArgfsTer34	p.T2227Rfs*34	ENST00000222270	NM_014727.1	2225	tCc/tc																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	187	1018	1	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	195	837	4	ENST00000575354.2:c.3743delC	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																															
ALK	238	MSKCC	GRCh37	2	29473977	29473977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	135	679	0	ENST00000389048.3:c.2198C>T	p.Thr733Ile	p.T733I	ENST00000389048	NM_004304.4	733	aCc/aTc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225368388	225368388	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	119	604	0	ENST00000264414.4:c.1358del	p.Asn453ThrfsTer2	p.N453Tfs*2	ENST00000264414	NM_003590.4	453	aAc/ac																																																																															
MLH1	4292	MSKCC	GRCh37	3	37050315	37050315	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	136	710	2	ENST00000231790.2:c.469del	p.Tyr157ThrfsTer3	p.Y157Tfs*3	ENST00000231790	NM_000249.3	155	cTt/ct																																																																															
MYD88	4615	MSKCC	GRCh37	3	38181908	38181908	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	23	371	0	ENST00000396334.3:c.532A>G	p.Ile178Val	p.I178V	ENST00000396334	NM_002468.4	178	Atc/Gtc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	126	413	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205003	128205004	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	72	481	0	ENST00000341105.2:c.437dup	p.Gly147TrpfsTer38	p.G147Wfs*38	ENST00000341105	NM_032638.4	146	ggt/ggGt																																																																															
ATR	545	MSKCC	GRCh37	3	142215906	142215906	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	53	507	3	ENST00000350721.4:c.5687C>A	p.Ala1896Asp	p.A1896D	ENST00000350721	NM_001184.3	1896	gCc/gAc																																																																															
TET2	54790	MSKCC	GRCh37	4	106158231	106158231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	27	492	0	ENST00000380013.4:c.3132G>T	p.Lys1044Asn	p.K1044N	ENST00000380013	NM_001127208.2	1044	aaG/aaT																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	116	612	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591149	67591151	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TGA	TGA	-			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	76	462	0	ENST00000274335.5:c.1744_1745+1del		p.LMdel	ENST00000274335		581	tTGAtg/ttg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149495402	149495402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	41	806	0	ENST00000261799.4:c.3245C>T	p.Pro1082Leu	p.P1082L	ENST00000261799	NM_002609.3	1082	cCg/cTg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523098	176523098	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	149	840	0	ENST00000292408.4:c.1862C>G	p.Thr621Ser	p.T621S	ENST00000292408	NM_213647.1	621	aCt/aGt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523142	176523143	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	133	827	1	ENST00000292408.4:c.1906_1907delinsTT	p.Gly636Phe	p.G636F	ENST00000292408	NM_213647.1	636	GGc/TTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	168	770	9	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32814948	32814948	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	137	677	0	ENST00000354258.4:c.2117del	p.Gly706ValfsTer12	p.G706Vfs*12	ENST00000354258	NM_000593.5	706	gGt/gt																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821200	32821200	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	147	790	0	ENST00000354258.4:c.394del	p.Ala132ProfsTer25	p.A132Pfs*25	ENST00000354258	NM_000593.5	132	Gcc/cc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956568	93956568	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	81	537	0	ENST00000369303.4:c.2668C>A	p.Leu890Ile	p.L890I	ENST00000369303	NM_004440.3	890	Cta/Ata																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	132	713	5	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
SYK	6850	MSKCC	GRCh37	9	93606581	93606581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	125	605	0	ENST00000375746.1:c.401A>G	p.Gln134Arg	p.Q134R	ENST00000375746	NM_001174167.1	134	cAg/cGg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98224161	98224161	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56173896		P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	50	269	1	ENST00000331920.6:c.2680G>A	p.Asp894Asn	p.D894N	ENST00000331920	NM_000264.3	894	Gat/Aat																																																																															
AR	367	MSKCC	GRCh37	X	66766087	66766087	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	159	403	0	ENST00000374690.3:c.1099T>C	p.Phe367Leu	p.F367L	ENST00000374690	NM_000044.3	367	Ttt/Ctt																																																																															
AR	367	MSKCC	GRCh37	X	66766187	66766187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	75	191	0	ENST00000374690.3:c.1199C>T	p.Ala400Val	p.A400V	ENST00000374690	NM_000044.3	400	gCg/gTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	112	897	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55143617	55143617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	37	358	1	ENST00000257290.5:c.1849C>T	p.Arg617Trp	p.R617W	ENST00000257290	NM_006206.4	617	Cgg/Tgg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42848519	42848519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	50	819	0	ENST00000398585.3:c.823del	p.Ser275LeufsTer5	p.S275Lfs*5	ENST00000398585	NM_001135099.1	275	Tct/ct																																																																															
TET1	80312	MSKCC	GRCh37	10	70406492	70406492	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1231	76	825	1	ENST00000373644.4:c.4006A>T	p.Thr1336Ser	p.T1336S	ENST00000373644	NM_030625.2	1336	Aca/Tca																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520009		P-0016943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	129	796	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952100	178952100	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	111	630	0	ENST00000263967.3:c.3155C>A	p.Thr1052Lys	p.T1052K	ENST00000263967	NM_006218.2	1052	aCa/aAa																																																																															
CDH1	999	MSKCC	GRCh37	16	68842366	68842366	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	153	860	0	ENST00000261769.5:c.429del	p.Asn144ThrfsTer71	p.N144Tfs*71	ENST00000261769	NM_004360.3	143	Ccc/cc																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	130	785	1	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14380350	14380350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	42	468	0	ENST00000256196.4:c.67G>A	p.Gly23Ser	p.G23S	ENST00000256196		23	Ggc/Agc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0016949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	101	218	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CBFB	865	MSKCC	GRCh37	16	67063684	67063684	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	116	212	1	ENST00000412916.2:c.133C>T	p.Gln45Ter	p.Q45*	ENST00000412916		45	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111487	8111487	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	185	221	0	ENST00000346208.3:c.973A>G	p.Thr325Ala	p.T325A	ENST00000346208		325	Acc/Gcc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118769	115118771	+	missense_variant	Missense_Mutation	ONP	GGG	GGG	CCC			P-0016949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	115	199	1	ENST00000257566.3:c.570_572inv	p.Ser190_Pro191delinsArgGly	p.S190_P191delinsRG	ENST00000257566	NM_016569.3	190	agCCCc/agGGGc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817873	3817873	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	125	200	0	ENST00000262367.5:c.3098A>G	p.Lys1033Arg	p.K1033R	ENST00000262367	NM_004380.2	1033	aAa/aGa																																																																															
CDH1	999	MSKCC	GRCh37	16	68842691	68842691	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	139	235	0	ENST00000261769.5:c.627del	p.Glu210LysfsTer5	p.E210Kfs*5	ENST00000261769	NM_004360.3	209	agA/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0016950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	65	754	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1173	41	732	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998890	11998890	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0016950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	29	302	0	ENST00000353533.5:c.394-2A>G		p.X132_splice	ENST00000353533	NM_003010.3	132																																																																																
GATA3	2625	MSKCC	GRCh37	10	8115905	8115906	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	35	706	0	ENST00000346208.3:c.1252dup	p.Thr418AsnfsTer89	p.T418Nfs*89	ENST00000346208		417	-/A																																																																															
FANCA	2175	MSKCC	GRCh37	16	89849317	89849317	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	253	867	0	ENST00000389301.3:c.1576G>C	p.Glu526Gln	p.E526Q	ENST00000389301	NM_000135.2	526	Gaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7572924	7572934	+	coding_sequence_variant,3_prime_UTR_variant	Frame_Shift_Del	DEL	ATGTCAGTCTG	ATGTCAGTCTG	-			P-0016960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	303	574	0	ENST00000269305.4:c.1175_*3delCAGACTGACAT		p.*392fs*	ENST00000269305	NM_001126112.2	392																																																																																
MAP2K4	6416	MSKCC	GRCh37	17	12028636	12028636	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	379	541	0	ENST00000353533.5:c.839C>G	p.Ser280Ter	p.S280*	ENST00000353533	NM_003010.3	280	tCa/tGa																																																																															
STAT3	6774	MSKCC	GRCh37	17	40476813	40476813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	128	819	3	ENST00000264657.5:c.1516G>A	p.Glu506Lys	p.E506K	ENST00000264657	NM_139276.2	506	Gag/Aag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2207633	2207633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	271	928	1	ENST00000398665.3:c.917C>T	p.Thr306Met	p.T306M	ENST00000398665	NM_032482.2	306	aCg/aTg																																																																															
MYC	4609	MSKCC	GRCh37	8	128753109	128753109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	420	710	0	ENST00000377970.2:c.1270G>A	p.Glu424Lys	p.E424K	ENST00000377970	NM_002467.4	424	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974779	21974780	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	70	218	0	ENST00000304494.5:c.47dup	p.Ala17GlyfsTer27	p.A17Gfs*27	ENST00000304494	NM_000077.4	16	ctg/ctTg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027060	71027084	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAGGGGCCTTGGGTGACGGGAGT	CAGAGGGGCCTTGGGTGACGGGAGT	-			P-0016961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	106	570	0	ENST00000318789.4:c.1243_1267del	p.Thr415SerfsTer51	p.T415Sfs*51	ENST00000318789	NM_032682.5	415	ACTCCCGTCACCCAAGGCCCCTCTGtc/tc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0016962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	103	724	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7573996	7573996	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	105	807	0	ENST00000269305.4:c.1031T>C	p.Leu344Pro	p.L344P	ENST00000269305	NM_001126112.2	344	cTg/cCg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591889	48591889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	57	499	0	ENST00000342988.3:c.1052A>G	p.Asp351Gly	p.D351G	ENST00000342988	NM_005359.5	351	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577128	7577128	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	118	763	0	ENST00000269305.4:c.810T>A	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	ttT/ttA																																																																															
APC	324	MSKCC	GRCh37	5	112174262	112174262	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	58	422	0	ENST00000257430.4:c.2971G>T	p.Glu991Ter	p.E991*	ENST00000257430	NM_000038.5	991	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0016962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	45	316	0	ENST00000257430.4:c.4063dup	p.Ser1355PhefsTer20	p.S1355Ffs*20	ENST00000257430	NM_000038.5	1353	-/T																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0016963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	195	848	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0016963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	179	603	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0016963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	184	772	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248427	212248427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	42	298	0	ENST00000342788.4:c.3840G>T	p.Glu1280Asp	p.E1280D	ENST00000342788	NM_005235.2	1280	gaG/gaT																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119777	70119778	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0016963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	209	841	2	ENST00000245479.2:c.782_783dup	p.Gly262ArgfsTer18	p.G262Rfs*18	ENST00000245479	NM_000346.3	260	cca/ccAGa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223649	36223649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	168	821	2	ENST00000222270.7:c.6199G>A	p.Gly2067Ser	p.G2067S	ENST00000222270	NM_014727.1	2067	Ggc/Agc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135779135	135779135	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	47	471	0	ENST00000298552.3:c.2111A>G	p.Tyr704Cys	p.Y704C	ENST00000298552	NM_001162426.1	704	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579349	7579349	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	97	752	0	ENST00000269305.4:c.338T>C	p.Phe113Ser	p.F113S	ENST00000269305	NM_001126112.2	113	tTc/tCc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520017		P-0016965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	95	818	0	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0016967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	184	559	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0016967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	95	525	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0016967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	190	764	2	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	67	435	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243936	46243936	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	159	747	0	ENST00000334344.6:c.2030del	p.Val677GlyfsTer24	p.V677Gfs*24	ENST00000334344	NM_152641.2	677	gTg/gg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118931	70118932	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	152	950	1	ENST00000245479.2:c.505dup	p.His169ProfsTer83	p.H169Pfs*83	ENST00000245479	NM_000346.3	168	gac/gaCc																																																																															
TET2	54790	MSKCC	GRCh37	4	106155535	106155535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	64	486	0	ENST00000380013.4:c.436G>A	p.Asp146Asn	p.D146N	ENST00000380013	NM_001127208.2	146	Gat/Aat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945396	151945396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	43	748	0	ENST00000262189.6:c.2123C>T	p.Ser708Leu	p.S708L	ENST00000262189	NM_170606.2	708	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0016969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	319	1101	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661621	227661621	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	55	535	0	ENST00000305123.5:c.1834T>C	p.Tyr612His	p.Y612H	ENST00000305123	NM_005544.2	612	Tac/Cac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928071	178928098	+	protein_altering_variant	In_Frame_Del	DEL	ATGGATTAGAAGATTTGCTGAACCCTAT	ATGGATTAGAAGATTTGCTGAACCCTAT	G			P-0016969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	121	730	0	ENST00000263967.3:c.1349_1376delinsG	p.His450_Ile459delinsArg	p.H450_I459delinsR	ENST00000263967	NM_006218.2	450	cATGGATTAGAAGATTTGCTGAACCCTATt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	102	767	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			432	139	376	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TET1	80312	MSKCC	GRCh37	10	70332591	70332591	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115711488		P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			800	232	577	1	ENST00000373644.4:c.496C>T	p.Leu166Phe	p.L166F	ENST00000373644	NM_030625.2	166	Ctt/Ttt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476376	88476376	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			755	100	462	2	ENST00000360948.2:c.1756C>A	p.Gln586Lys	p.Q586K	ENST00000360948	NM_001012338.2	586	Cag/Aag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670492	134670492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			695	384	531	0	ENST00000398015.3:c.403C>T	p.Leu135Phe	p.L135F	ENST00000398015	NM_004441.4	135	Ctc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			454	189	401	0	ENST00000269305.4:c.673-2A>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
RET	5979	MSKCC	GRCh37	10	43609011	43609011	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			521	172	415	0	ENST00000355710.3:c.1767C>A	p.Ser589Arg	p.S589R	ENST00000355710	NM_020975.4	589	agC/agA																																																																															
WT1	7490	MSKCC	GRCh37	11	32456555	32456555	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			124	16	58	0	ENST00000332351.3:c.337G>C	p.Ala113Pro	p.A113P	ENST00000332351	NM_024426.4	113	Gct/Cct																																																																															
PAK1	5058	MSKCC	GRCh37	11	77090428	77090428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			568	69	254	0	ENST00000356341.3:c.297G>A	p.Met99Ile	p.M99I	ENST00000356341	NM_002576.4	99	atG/atA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435953	49435953	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			889	366	585	0	ENST00000301067.7:c.6028G>T	p.Glu2010Ter	p.E2010*	ENST00000301067	NM_003482.3	2010	Gag/Tag																																																																															
POLE	5426	MSKCC	GRCh37	12	133244949	133244949	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	282	640	1	ENST00000320574.5:c.2166G>T	p.Arg722Ser	p.R722S	ENST00000320574	NM_006231.2	722	agG/agT																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912919	32912919	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			476	236	522	1	ENST00000380152.3:c.4427A>T	p.Asp1476Val	p.D1476V	ENST00000380152		1476	gAc/gTc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609511	81609511	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			671	97	405	1	ENST00000298171.2:c.1109T>A	p.Leu370His	p.L370H	ENST00000298171	NM_000369.2	370	cTc/cAc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18943071	18943071	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			676	354	486	0	ENST00000262803.5:c.53C>G	p.Thr18Arg	p.T18R	ENST00000262803	NM_002911.3	18	aCg/aGg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99169286	99169286	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			885	335	575	1	ENST00000074304.5:c.1216C>T	p.Gln406Ter	p.Q406*	ENST00000074304	NM_001134224.1	406	Cag/Tag																																																																															
SRC	6714	MSKCC	GRCh37	20	36026207	36026207	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	459	663	0	ENST00000358208.4:c.809T>A	p.Leu270Gln	p.L270Q	ENST00000358208		270	cTg/cAg																																																																															
VHL	7428	MSKCC	GRCh37	3	10188233	10188233	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			564	375	638	0	ENST00000256474.2:c.376G>C	p.Asp126His	p.D126H	ENST00000256474	NM_000551.3	126	Gat/Cat																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55136913	55136913	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			744	118	417	0	ENST00000257290.5:c.1235A>C	p.Gln412Pro	p.Q412P	ENST00000257290	NM_006206.4	412	cAa/cCa																																																																															
KDR	3791	MSKCC	GRCh37	4	55963922	55963922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			571	240	400	0	ENST00000263923.4:c.2521G>A	p.Gly841Ser	p.G841S	ENST00000263923	NM_002253.2	841	Ggc/Agc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176684042	176684042	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			626	398	678	2	ENST00000439151.2:c.4856G>T	p.Cys1619Phe	p.C1619F	ENST00000439151	NM_022455.4	1619	tGt/tTt																																																																															
IRF4	3662	MSKCC	GRCh37	6	407593	407594	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			702	105	428	2	ENST00000380956.4:c.1351_1352delGAinsAT	p.Glu451Ile	p.E451I	ENST00000380956	NM_001195286.1	451	GAa/ATa																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158636	26158636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			260	89	139	1	ENST00000289316.2:c.239G>A	p.Arg80His	p.R80H	ENST00000289316	NM_138720.2	80	cGc/cAc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33286863	33286863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			907	96	397	1	ENST00000374542.5:c.2074G>A	p.Gly692Ser	p.G692S	ENST00000374542	NM_001141970.1	692	Ggc/Agc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521853	157521853	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			479	259	344	0	ENST00000346085.5:c.4125T>A	p.His1375Gln	p.H1375Q	ENST00000346085	NM_020732.3	1375	caT/caA																																																																															
JAK2	3717	MSKCC	GRCh37	9	5070049	5070049	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	69	340	0	ENST00000381652.3:c.1638A>G	p.Ile546Met	p.I546M	ENST00000381652	NM_004972.3	546	atA/atG																																																																															
BTK	695	MSKCC	GRCh37	X	100613672	100613672	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	305	248	0	ENST00000308731.7:c.907G>T	p.Gly303Cys	p.G303C	ENST00000308731	NM_000061.2	303	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057520005		P-0016983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1300	65	749	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	285	685	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0016984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	255	550	2	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	129	356	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	110	323	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																																																															
ATM	472	MSKCC	GRCh37	11	108186757	108186757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	271	678	1	ENST00000278616.4:c.6115G>A	p.Glu2039Lys	p.E2039K	ENST00000278616	NM_000051.3	2039	Gaa/Aaa																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45799143	45799143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	269	641	1	ENST00000372115.3:c.248G>A	p.Arg83Gln	p.R83Q	ENST00000372115	NM_001048171.1	83	cGa/cAa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372224	55372224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	40	544	1	ENST00000297316.4:c.914C>T	p.Ala305Val	p.A305V	ENST00000297316	NM_022454.3	305	gCg/gTg																																																																															
ABL1	25	MSKCC	GRCh37	9	133759665	133759665	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	56	617	0	ENST00000318560.5:c.1988G>T	p.Ser663Ile	p.S663I	ENST00000318560	NM_005157.4	663	aGc/aTc																																																																															
SESN2	83667	MSKCC	GRCh37	1	28607300	28607300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	222	430	1	ENST00000253063.3:c.1430G>A	p.Arg477His	p.R477H	ENST00000253063	NM_031459.4	477	cGc/cAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28896984	28896984	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	247	568	0	ENST00000282397.4:c.2896T>A	p.Phe966Ile	p.F966I	ENST00000282397	NM_002019.4	966	Ttt/Att																																																																															
TP53	7157	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1324	121	711	0	ENST00000269305.4:c.794T>C	p.Leu265Pro	p.L265P	ENST00000269305	NM_001126112.2	265	cTg/cCg																																																																															
RB1	5925	MSKCC	GRCh37	13	48934154	48934164	+	stop_gained,protein_altering_variant	Nonsense_Mutation	DEL	GGAAGTATTAC	GGAAGTATTAC	AAGATGAA			P-0016991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	147	430	2	ENST00000267163.4:c.609_619delinsAAGATGAA	p.Glu204_Gln207delinsArgTerLys	p.E204_Q207delinsR*K	ENST00000267163	NM_000321.2	203	ggGGAAGTATTACaa/ggAAGATGAAaa																																																																															
BLM	641	MSKCC	GRCh37	15	91308599	91308599	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1282	103	488	0	ENST00000355112.3:c.2148G>C	p.Leu716Phe	p.L716F	ENST00000355112	NM_000057.2	716	ttG/ttC																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857818	9857818	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	45	348	0	ENST00000330684.3:c.3583G>C	p.Asp1195His	p.D1195H	ENST00000330684	NM_001134407.1	1195	Gac/Cac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	136	713	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0016992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	181	593	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
MGA	23269	MSKCC	GRCh37	15	41988801	41988801	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	165	809	0	ENST00000219905.7:c.1596del	p.Lys532AsnfsTer15	p.K532Nfs*15	ENST00000219905	NM_001164273.1	531	agA/ag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604664	48604664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	114	422	0	ENST00000342988.3:c.1486del	p.Arg496ValfsTer8	p.R496Vfs*8	ENST00000342988	NM_005359.5	496	Cgt/gt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251330	99251330	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	244	597	0	ENST00000268035.6:c.634C>T	p.Gln212Ter	p.Q212*	ENST00000268035	NM_000875.3	212	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	288	560	3	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	269	761	0	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121913482		P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	182	422	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540380	187540380	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202097333		P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	29	449	1	ENST00000441802.2:c.7360C>T	p.Arg2454Trp	p.R2454W	ENST00000441802	NM_005245.3	2454	Cgg/Tgg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120469178	120469178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	331	1052	0	ENST00000256646.2:c.3949G>A	p.Gly1317Arg	p.G1317R	ENST00000256646	NM_024408.3	1317	Ggg/Agg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195752	102195752	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	470	413	0	ENST00000263464.3:c.512C>G	p.Ala171Gly	p.A171G	ENST00000263464	NM_001165.4	171	gCc/gGc																																																																															
RB1	5925	MSKCC	GRCh37	13	48947599	48947599	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	299	687	0	ENST00000267163.4:c.1187del	p.Pro396LeufsTer5	p.P396Lfs*5	ENST00000267163	NM_000321.2	396	Cct/ct																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533093	63533093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	174	488	0	ENST00000307078.5:c.1801G>T	p.Gly601Cys	p.G601C	ENST00000307078	NM_004655.3	601	Ggc/Tgc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56400628	56400628	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	135	240	2	ENST00000348428.3:c.1223-1G>T		p.X408_splice	ENST00000348428	NM_006785.3	408																																																																																
PIK3R2	5296	MSKCC	GRCh37	19	18266990	18266990	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	112	267	0	ENST00000222254.8:c.301C>A	p.Arg101Ser	p.R101S	ENST00000222254	NM_005027.3	101	Cgt/Agt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198264842	198264842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	62	831	0	ENST00000335508.6:c.2950G>A	p.Glu984Lys	p.E984K	ENST00000335508	NM_012433.2	984	Gaa/Aaa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460450	149460450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	116	574	1	ENST00000286301.3:c.187G>A	p.Asp63Asn	p.D63N	ENST00000286301	NM_005211.3	63	Gat/Aat																																																																															
E2F3	1871	MSKCC	GRCh37	6	20481617	20481617	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	165	439	0	ENST00000346618.3:c.686A>T	p.His229Leu	p.H229L	ENST00000346618	NM_001949.4	229	cAc/cTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	257	568	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276653	15276653	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0017001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	51	662	0	ENST00000263388.2:c.5612C>G	p.Ser1871Ter	p.S1871*	ENST00000263388	NM_000435.2	1871	tCa/tGa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032566	47032566	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	210	559	0	ENST00000329236.7:c.241G>T	p.Glu81Ter	p.E81*	ENST00000329236	NM_001204466.1	81	Gag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911787	32911787	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	212	759	2	ENST00000380152.3:c.3295T>A	p.Ser1099Thr	p.S1099T	ENST00000380152		1099	Tca/Aca																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495704	72495705	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTC			P-0017001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	53	481	0	ENST00000477973.2:c.363_365dup	p.Arg122dup	p.R122dup	ENST00000477973	NM_012234.5	122	aac/aGAAac																																																																															
BRAF	673	MSKCC	GRCh37	7	140434558	140434558	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	38	254	0	ENST00000288602.6:c.2140A>G	p.Ile714Val	p.I714V	ENST00000288602	NM_004333.4	714	Att/Gtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0017008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	44	733	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	43	491	0	ENST00000269305.4:c.712T>A	p.Cys238Ser	p.C238S	ENST00000269305	NM_001126112.2	238	Tgt/Agt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520208	9520208	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	36	491	0	ENST00000353224.5:c.2061G>C	p.Gln687His	p.Q687H	ENST00000353224	NM_177990.2	687	caG/caC																																																																															
UPF1	5976	MSKCC	GRCh37	19	18961540	18961540	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	89	327	0	ENST00000262803.5:c.673G>C	p.Asp225His	p.D225H	ENST00000262803	NM_002911.3	225	Gac/Cac																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607402	46607402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	294	583	0	ENST00000263734.3:c.1591C>T	p.Pro531Ser	p.P531S	ENST00000263734	NM_001430.4	531	Ccc/Tcc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881002	37881003	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTCCCCA			P-0017013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	287	732	0	ENST00000269571.5:c.2332_2340dupGGCTCCCCA	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	-/GGCTCCCCA																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120794	94120794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	54	543	0	ENST00000369303.4:c.257G>A	p.Arg86Gln	p.R86Q	ENST00000369303	NM_004440.3	86	cGg/cAg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912291	32912291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	36	556	0	ENST00000380152.3:c.3799G>A	p.Asp1267Asn	p.D1267N	ENST00000380152		1267	Gat/Aat																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562606	95562606	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	40	376	0	ENST00000343455.3:c.4651G>C	p.Glu1551Gln	p.E1551Q	ENST00000343455	NM_177438.2	1551	Gag/Cag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448352	56448352	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	57	748	0	ENST00000407977.2:c.295C>G	p.Leu99Val	p.L99V	ENST00000407977		99	Ctg/Gtg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141559255	141559255	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	71	649	1	ENST00000220592.5:c.1546C>T	p.Gln516Ter	p.Q516*	ENST00000220592	NM_012154.3	516	Cag/Tag																																																																															
AR	367	MSKCC	GRCh37	X	66766208	66766208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	65	380	0	ENST00000374690.3:c.1220G>C	p.Arg407Pro	p.R407P	ENST00000374690	NM_000044.3	407	cGc/cCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501191		P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	108	695	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	201	432	2	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	77	533	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163720	32163720	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1253487294		P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	31	420	1	ENST00000375023.3:c.5506G>A	p.Glu1836Lys	p.E1836K	ENST00000375023	NM_004557.3	1836	Gag/Aag																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31394052	31394052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	61	599	0	ENST00000328111.2:c.2339C>T	p.Ser780Leu	p.S780L	ENST00000328111	NM_006892.3	780	tCg/tTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466580	120466580	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	148	444	0	ENST00000256646.2:c.4539C>G	p.Phe1513Leu	p.F1513L	ENST00000256646	NM_024408.3	1513	ttC/ttG																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624275	89624275	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	64	523	0	ENST00000371953.3:c.49C>G	p.Gln17Glu	p.Q17E	ENST00000371953	NM_000314.4	17	Caa/Gaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440534	49440534	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1503	134	915	0	ENST00000301067.7:c.4276G>C	p.Glu1426Gln	p.E1426Q	ENST00000301067	NM_003482.3	1426	Gag/Cag																																																																															
MGA	23269	MSKCC	GRCh37	15	42028438	42028438	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	52	421	1	ENST00000219905.7:c.3976C>T	p.Gln1326Ter	p.Q1326*	ENST00000219905	NM_001164273.1	1326	Cag/Tag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472473	88472473	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	122	660	0	ENST00000360948.2:c.2082G>C	p.Lys694Asn	p.K694N	ENST00000360948	NM_001012338.2	694	aaG/aaC																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119881	70119881	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	134	748	0	ENST00000245479.2:c.883G>C	p.Asp295His	p.D295H	ENST00000245479	NM_000346.3	295	Gac/Cac																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2207631	2207631	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	105	748	0	ENST00000398665.3:c.915G>C	p.Trp305Cys	p.W305C	ENST00000398665	NM_032482.2	305	tgG/tgC																																																																															
CARM1	10498	MSKCC	GRCh37	19	11030557	11030557	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	186	639	0	ENST00000327064.4:c.1111G>C	p.Glu371Gln	p.E371Q	ENST00000327064	NM_199141.1	371	Gaa/Caa																																																																															
CALR	811	MSKCC	GRCh37	19	13051192	13051192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	100	514	0	ENST00000316448.5:c.628G>A	p.Asp210Asn	p.D210N	ENST00000316448	NM_004343.3	210	Gat/Aat																																																																															
CUL3	8452	MSKCC	GRCh37	2	225378291	225378291	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	103	631	0	ENST00000264414.4:c.604G>T	p.Glu202Ter	p.E202*	ENST00000264414	NM_003590.4	202	Gaa/Taa																																																																															
KDR	3791	MSKCC	GRCh37	4	55981164	55981164	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1256	113	608	1	ENST00000263923.4:c.535T>C	p.Trp179Arg	p.W179R	ENST00000263923	NM_002253.2	179	Tgg/Cgg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79968660	79968660	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	91	597	0	ENST00000265081.6:c.1010C>G	p.Ser337Cys	p.S337C	ENST00000265081	NM_002439.4	337	tCt/tGt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131893068	131893068	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	101	400	0	ENST00000265335.6:c.52G>C	p.Glu18Gln	p.E18Q	ENST00000265335		18	Gag/Cag																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020742	26020742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	26	191	0	ENST00000357647.3:c.25C>T	p.Arg9Trp	p.R9W	ENST00000357647	NM_003529.2	9	Cgg/Tgg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117709172	117709174	+	inframe_deletion	In_Frame_Del	DEL	AAT	AAT	-			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	167	442	0	ENST00000368508.3:c.1783_1785del	p.Ile595del	p.I595del	ENST00000368508	NM_002944.2	595	ATT/-																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650575	48650575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	275	866	0	ENST00000376670.3:c.545C>T	p.Ser182Leu	p.S182L	ENST00000376670	NM_002049.3	182	tCa/tTa																																																																															
MED12	9968	MSKCC	GRCh37	X	70360490	70360490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1200	146	913	1	ENST00000374080.3:c.6050C>T	p.Ser2017Leu	p.S2017L	ENST00000374080		2017	tCa/tTa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123182858	123182858	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	54	453	0	ENST00000218089.9:c.823C>G	p.Gln275Glu	p.Q275E	ENST00000218089	NM_001042749.1	275	Cag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	437	895	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	197	543	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	192	539	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55210075	55210075	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	321	686	0	ENST00000275493.2:c.185T>G	p.Leu62Arg	p.L62R	ENST00000275493	NM_005228.3	62	cTt/cGt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048788	180048788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	296	864	0	ENST00000261937.6:c.1774C>T	p.Arg592Cys	p.R592C	ENST00000261937	NM_182925.4	592	Cgc/Tgc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044541	47044541	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	501	439	1	ENST00000329236.7:c.1804C>T	p.Arg602Ter	p.R602*	ENST00000329236	NM_001204466.1	602	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105733	27105827	+	frameshift_variant	Frame_Shift_Del	DEL	GTTGAAAATGATGAGGAGATAGCCTTTTCAGGCAAGGACAAGCCAGCTTCAGAGAATAGTGAGGAGAAGCTGATCAGTAAGTTTGACAAGCTTCC	GTTGAAAATGATGAGGAGATAGCCTTTTCAGGCAAGGACAAGCCAGCTTCAGAGAATAGTGAGGAGAAGCTGATCAGTAAGTTTGACAAGCTTCC	-			P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	135	335	0	ENST00000324856.7:c.5344_5438del	p.Val1782SerfsTer8	p.V1782Sfs*8	ENST00000324856	NM_006015.4	1782	GTTGAAAATGATGAGGAGATAGCCTTTTCAGGCAAGGACAAGCCAGCTTCAGAGAATAGTGAGGAGAAGCTGATCAGTAAGTTTGACAAGCTTCCa/a																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115763	8115763	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	158	890	0	ENST00000346208.3:c.1109G>C	p.Ser370Thr	p.S370T	ENST00000346208		370	aGc/aCc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710682	114710683	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	246	610	1	ENST00000543371.1:c.169_170del	p.Asn57GlnfsTer39	p.N57Qfs*39	ENST00000543371	NM_001198531.1	56	cAA/c																																																																															
NF1	4763	MSKCC	GRCh37	17	29541588	29541588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	118	561	0	ENST00000358273.4:c.1514del	p.Lys505SerfsTer21	p.K505Sfs*21	ENST00000358273	NM_001042492.2	504	ccA/cc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281892	39281892	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	277	809	0	ENST00000402219.2:c.583A>G	p.Thr195Ala	p.T195A	ENST00000402219	NM_005633.3	195	Acc/Gcc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161949	47161949	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	69	420	0	ENST00000409792.3:c.4177T>G	p.Leu1393Val	p.L1393V	ENST00000409792	NM_014159.6	1393	Tta/Gta																																																																															
SYK	6850	MSKCC	GRCh37	9	93624558	93624558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	339	712	1	ENST00000375746.1:c.649C>T	p.Arg217Cys	p.R217C	ENST00000375746	NM_001174167.1	217	Cgc/Tgc																																																																															
ABL1	25	MSKCC	GRCh37	9	133760979	133760979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	237	856	0	ENST00000318560.5:c.3302C>T	p.Pro1101Leu	p.P1101L	ENST00000318560	NM_005157.4	1101	cCg/cTg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	104	454	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057835	27057835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1295	214	899	0	ENST00000324856.7:c.1543C>T	p.Gln515Ter	p.Q515*	ENST00000324856	NM_006015.4	515	Cag/Tag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99192881	99192881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	57	409	0	ENST00000268035.6:c.71C>T	p.Ser24Leu	p.S24L	ENST00000268035	NM_000875.3	24	tCg/tTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65304149	65304149	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0017026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	88	493	0	ENST00000342505.4:c.2966A>C	p.Lys989Thr	p.K989T	ENST00000342505	NM_002227.2	989	aAg/aCg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120510124	120510124	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0017026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	201	531	0	ENST00000256646.2:c.1385C>G	p.Ser462Ter	p.S462*	ENST00000256646	NM_024408.3	462	tCa/tGa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111495	8111496	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGA			P-0017026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	242	623	0	ENST00000346208.3:c.982_985dup	p.Arg329MetfsTer24	p.R329Mfs*24	ENST00000346208		327	-/TGGA																																																																															
RET	5979	MSKCC	GRCh37	10	43622120	43622120	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	103	566	2	ENST00000355710.3:c.3142delC	p.Leu1048SerfsTer61	p.L1048Sfs*61	ENST00000355710	NM_020975.4	1046	gCc/gc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434271	49434271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1298	305	917	2	ENST00000301067.7:c.7282C>T	p.Arg2428Trp	p.R2428W	ENST00000301067	NM_003482.3	2428	Cgg/Tgg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945815	17945815	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0017026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	178	551	0	ENST00000458235.1:c.2048-3C>T		p.X683_splice	ENST00000458235	NM_000215.3	683																																																																																
PREX2	80243	MSKCC	GRCh37	8	68965430	68965430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	77	719	0	ENST00000288368.4:c.1042G>A	p.Glu348Lys	p.E348K	ENST00000288368	NM_024870.2	348	Gag/Aag																																																																															
AGO2	27161	MSKCC	GRCh37	8	141557591	141557591	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1598	240	709	0	ENST00000220592.5:c.1724A>T	p.Asn575Ile	p.N575I	ENST00000220592	NM_012154.3	575	aAc/aTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	31	585	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0017028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	169	513	1	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0017028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	143	332	0	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
NFE2L2	4780	MSKCC	GRCh37	2	178098954	178098954	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	31	325	0	ENST00000397062.3:c.91G>C	p.Gly31Arg	p.G31R	ENST00000397062	NM_006164.4	31	Gga/Cga																																																																															
POLE	5426	MSKCC	GRCh37	12	133253974	133253974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	133	548	1	ENST00000320574.5:c.776G>T	p.Arg259Leu	p.R259L	ENST00000320574	NM_006231.2	259	cGc/cTc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4094498	4094498	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0017028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	172	735	0	ENST00000262948.5:c.1047-2A>C		p.X349_splice	ENST00000262948	NM_030662.3	349																																																																																
JAK3	3718	MSKCC	GRCh37	19	17954651	17954651	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	254	749	0	ENST00000458235.1:c.243G>C	p.Trp81Cys	p.W81C	ENST00000458235	NM_000215.3	81	tgG/tgC																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170009641	170009641	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0017028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1338	194	456	2	ENST00000295797.4:c.1204-1G>T		p.X402_splice	ENST00000295797	NM_002740.5	402																																																																																
FANCC	2176	MSKCC	GRCh37	9	97876938	97876938	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	181	453	0	ENST00000289081.3:c.1127G>C	p.Arg376Thr	p.R376T	ENST00000289081	NM_000136.2	376	aGa/aCa																																																																															
MGA	23269	MSKCC	GRCh37	15	42042806	42042806	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	48	256	0	ENST00000219905.7:c.7001T>G	p.Val2334Gly	p.V2334G	ENST00000219905	NM_001164273.1	2334	gTa/gGa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591146	67591156	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTTGATGTAA	ACTTGATGTAA	G			P-0017031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	87	362	0	ENST00000274335.5:c.1739_1745+4delinsG		p.X580_splice	ENST00000274335		580																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	247	426	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	349	640	0	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763254	59763254	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			6777	6102	686	1	ENST00000259008.2:c.2848A>G	p.Lys950Glu	p.K950E	ENST00000259008	NM_032043.2	950	Aaa/Gaa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59924539	59924539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1452	5450	455	0	ENST00000259008.2:c.550G>A	p.Asp184Asn	p.D184N	ENST00000259008	NM_032043.2	184	Gat/Aat																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59934430	59934430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	2789	311	0	ENST00000259008.2:c.368C>T	p.Ser123Leu	p.S123L	ENST00000259008	NM_032043.2	123	tCa/tTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952152	178952162	+	coding_sequence_variant,3_prime_UTR_variant	Frame_Shift_Del	DEL	AAAAGATAACT	AAAAGATAACT	-			P-0017034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	205	355	0	ENST00000263967.3:c.3207_*10delAAAAGATAACT		p.*1069fs*	ENST00000263967	NM_006218.2	1069																																																																																
RASA1	5921	MSKCC	GRCh37	5	86675576	86675576	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	240	429	0	ENST00000274376.6:c.2512A>C	p.Asn838His	p.N838H	ENST00000274376	NM_002890.2	838	Aat/Cat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	240	463	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68856113	68856113	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	266	580	0	ENST00000261769.5:c.1921C>T	p.Gln641Ter	p.Q641*	ENST00000261769	NM_004360.3	641	Cag/Tag																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480082	50480082	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	101	495	0	ENST00000394963.4:c.316C>T	p.Gln106Ter	p.Q106*	ENST00000394963	NM_003076.4	106	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151880169	151880169	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	273	498	1	ENST00000262189.6:c.5155C>T	p.Gln1719Ter	p.Q1719*	ENST00000262189	NM_170606.2	1719	Cag/Tag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44879852	44879852	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0017036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	168	320	0	ENST00000377967.4:c.444-3C>T		p.X148_splice	ENST00000377967	NM_021140.2	148																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	269	581	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056132	26056132	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	68	419	0	ENST00000343677.2:c.525G>C	p.Lys175Asn	p.K175N	ENST00000343677	NM_005319.3	175	aaG/aaC																																																																															
FANCA	2175	MSKCC	GRCh37	16	89857881	89857881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	101	632	3	ENST00000389301.3:c.1289C>T	p.Ala430Val	p.A430V	ENST00000389301	NM_000135.2	430	gCg/gTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858192	9858192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	67	498	0	ENST00000330684.3:c.3209G>A	p.Cys1070Tyr	p.C1070Y	ENST00000330684	NM_001134407.1	1070	tGc/tAc																																																																															
RARA	5914	MSKCC	GRCh37	17	38487520	38487520	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	65	491	1	ENST00000254066.5:c.50A>G	p.Asn17Ser	p.N17S	ENST00000254066	NM_000964.3	17	aAt/aGt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119710	70119710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1341	97	782	1	ENST00000245479.2:c.712C>A	p.Pro238Thr	p.P238T	ENST00000245479	NM_000346.3	238	Ccc/Acc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041007	47041008	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	289	316	0	ENST00000329236.7:c.1304dup	p.Ala436GlyfsTer4	p.A436Gfs*4	ENST00000329236	NM_001204466.1	435	gag/gAag																																																																															
ARAF	369	MSKCC	GRCh37	X	47428127	47428127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	104	311	0	ENST00000377045.4:c.1087C>G	p.His363Asp	p.H363D	ENST00000377045	NM_001654.4	363	Cat/Gat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	332	530	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0017039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	408	402	3	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175060	112175060	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	93	193	0	ENST00000257430.4:c.3769G>T	p.Glu1257Ter	p.E1257*	ENST00000257430	NM_000038.5	1257	Gaa/Taa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344383	118344383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	112	259	0	ENST00000534358.1:c.2509C>T	p.Pro837Ser	p.P837S	ENST00000534358	NM_005933.3	837	Cct/Tct																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343627	343627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	262	586	0	ENST00000262320.3:c.2047G>A	p.Val683Met	p.V683M	ENST00000262320	NM_003502.3	683	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	440	656	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	353	512	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347864	347864	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	271	749	0	ENST00000262320.3:c.1642G>T	p.Glu548Ter	p.E548*	ENST00000262320	NM_003502.3	548	Gag/Tag																																																																															
RAD52	5893	MSKCC	GRCh37	12	1039241	1039241	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	461	588	0	ENST00000358495.3:c.256C>A	p.His86Asn	p.H86N	ENST00000358495	NM_134424.2	86	Cac/Aac																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300845	137300845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	164	679	0	ENST00000481739.1:c.490C>A	p.Arg164Ser	p.R164S	ENST00000481739	NM_002957.4	164	Cgc/Agc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	289	523	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0017042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	213	398	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46527739	46527740	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	146	247	0	ENST00000262741.5:c.625dup	p.Ile209AsnfsTer12	p.I209Nfs*12	ENST00000262741	NM_003629.3	209	ata/aAta																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186501401	186501401	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0017042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	122	214	0	ENST00000323963.5:c.2T>A	p.Met1?	p.M1?	ENST00000323963		1	aTg/aAg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	98	344	0				ENST00000310581	NM_198253.2																																																																																	
ERBB2	2064	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0017048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2062	5778	689	0	ENST00000269571.5:c.2331_2339dupGGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0017048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	109	732	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
RARA	5914	MSKCC	GRCh37	17	38512450	38512450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	126	755	1	ENST00000254066.5:c.1361G>A	p.Arg454Lys	p.R454K	ENST00000254066	NM_000964.3	454	aGa/aAa																																																																															
ATM	472	MSKCC	GRCh37	11	108186754	108186754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	89	607	0	ENST00000278616.4:c.6112C>T	p.His2038Tyr	p.H2038Y	ENST00000278616	NM_000051.3	2038	Cac/Tac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730828	40730828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	105	700	0	ENST00000373198.4:c.3707G>A	p.Cys1236Tyr	p.C1236Y	ENST00000373198	NM_133170.3	1236	tGc/tAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041190	47041190	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	217	874	1	ENST00000329236.7:c.1384C>T	p.Gln462Ter	p.Q462*	ENST00000329236	NM_001204466.1	462	Cag/Tag																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933819	36933819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	57	446	0	ENST00000361632.4:c.1580C>A	p.Pro527His	p.P527H	ENST00000361632		527	cCc/cAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118380661	118380661	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0017049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	35	379	0	ENST00000534358.1:c.10901-2A>G		p.X3634_splice	ENST00000534358	NM_005933.3	3634																																																																																
KDM5A	5927	MSKCC	GRCh37	12	430221	430221	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	82	445	0	ENST00000399788.2:c.2481G>T	p.Lys827Asn	p.K827N	ENST00000399788	NM_001042603.1	827	aaG/aaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	112	620	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032044	10032044	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	61	509	0	ENST00000330684.3:c.779T>C	p.Leu260Ser	p.L260S	ENST00000330684	NM_001134407.1	260	tTg/tCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	79	530	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
MSI2	124540	MSKCC	GRCh37	17	55478800	55478800	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	53	507	0	ENST00000284073.2:c.373G>T	p.Asp125Tyr	p.D125Y	ENST00000284073	NM_138962.2	125	Gat/Tat																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602581	10602581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	58	503	0	ENST00000171111.5:c.997G>T	p.Gly333Cys	p.G333C	ENST00000171111	NM_203500.1	333	Ggc/Tgc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645711	12645711	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	22	225	0	ENST00000251849.4:c.758A>G	p.Gln253Arg	p.Q253R	ENST00000251849	NM_002880.3	253	cAg/cGg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390931	89390931	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	38	446	0	ENST00000336596.2:c.997A>G	p.Ile333Val	p.I333V	ENST00000336596	NM_005233.5	333	Atc/Gtc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38194902	38194902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1220	94	816	0	ENST00000317025.8:c.831G>T	p.Lys277Asn	p.K277N	ENST00000317025	NM_023034.1	277	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0017051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	191	523	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49418670	49418670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	330	558	1	ENST00000301067.7:c.15844C>T	p.Arg5282Ter	p.R5282*	ENST00000301067	NM_003482.3	5282	Cga/Tga																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655173	45655173	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	48	360	0	ENST00000407780.3:c.679A>G	p.Thr227Ala	p.T227A	ENST00000407780	NM_001283052.1	227	Act/Gct																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38959317	38959317	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1221	150	443	1	ENST00000357387.3:c.2158A>C	p.Ile720Leu	p.I720L	ENST00000357387	NM_152756.3	720	Att/Ctt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131926965	131926965	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	178	394	1	ENST00000265335.6:c.1502A>C	p.Lys501Thr	p.K501T	ENST00000265335		501	aAa/aCa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562912	176562912	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1172	120	753	2	ENST00000439151.2:c.808C>T	p.Gln270Ter	p.Q270*	ENST00000439151	NM_022455.4	270	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	37	517	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0017052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	48	506	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141551301	141551301	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	58	684	0	ENST00000220592.5:c.1996T>A	p.Phe666Ile	p.F666I	ENST00000220592	NM_012154.3	666	Ttc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577586	7577586	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	274	467	0	ENST00000269305.4:c.695T>A	p.Ile232Asn	p.I232N	ENST00000269305	NM_001126112.2	232	aTc/aAc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141559305	141559307	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0017057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	249	490	0	ENST00000220592.5:c.1494_1496del	p.Asp499del	p.D499del	ENST00000220592	NM_012154.3	498	gcGGAc/gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577593	7577603	+	frameshift_variant	Frame_Shift_Del	DEL	TACAGTCAGAG	TACAGTCAGAG	A			P-0017057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	220	438	0	ENST00000269305.4:c.678_688delinsT	p.Ser227ProfsTer17	p.S227Pfs*17	ENST00000269305	NM_001126112.2	226	ggCTCTGACTGTAcc/ggTcc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151871214	151871214	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0017065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	129	505	0	ENST00000262189.6:c.9374+2T>G		p.X3125_splice	ENST00000262189	NM_170606.2	3125																																																																																
PTEN	5728	MSKCC	GRCh37	10	89720711	89720712	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	36	122	0	ENST00000371953.3:c.867dup	p.Val290SerfsTer8	p.V290Sfs*8	ENST00000371953	NM_000314.4	288	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577093	7577094	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	328	543	0	ENST00000269305.4:c.844dup	p.Arg282ProfsTer24	p.R282Pfs*24	ENST00000269305	NM_001126112.2	282	cgg/cCgg																																																																															
ALK	238	MSKCC	GRCh37	2	29606627	29606627	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	130	442	0	ENST00000389048.3:c.1253A>G	p.Asp418Gly	p.D418G	ENST00000389048	NM_004304.4	418	gAc/gGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0017096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	190	491	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231783	36231783	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	249	602	0	ENST00000300305.3:c.601del	p.Arg201GlufsTer10	p.R201Efs*10	ENST00000300305		201	Cga/ga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161782	56161783	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTACATCTAGTTCAGA			P-0017096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	144	440	0	ENST00000399503.3:c.1283_1284insATCTAGTTCAGACTAC	p.Glu432AspfsTer4	p.E432Dfs*4	ENST00000399503	NM_005921.1	427	tct/tCTACATCTAGTTCAGAct																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178382	56178382	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0017096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	128	272	1	ENST00000399503.3:c.3355A>T	p.Lys1119Ter	p.K1119*	ENST00000399503	NM_005921.1	1119	Aaa/Taa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2752	485	443	2	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100117	157100119	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs1450867853		P-0017097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	10	23	0	ENST00000346085.5:c.1069_1071del	p.Gly357del	p.G357del	ENST00000346085	NM_020732.3	352	GGC/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578213	7578213	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	736	642	0	ENST00000269305.4:c.636delT	p.Arg213AspfsTer34	p.R213Dfs*34	ENST00000269305	NM_001126112.2	212	ttT/tt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453138	140453139	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTA			P-0017097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	521	452	0	ENST00000288602.6:c.1794_1796dupTAC	p.Thr599dup	p.T599dup	ENST00000288602	NM_004333.4	599	aca/acTACa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692889	89692889	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	1846	334	0	ENST00000371953.3:c.375delA	p.Ala126LeufsTer8	p.A126Lfs*8	ENST00000371953	NM_000314.4	125	Aaa/aa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479763	67479763	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs140880290		P-0017097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	230	420	0	ENST00000327367.4:c.1070A>G	p.Asn357Ser	p.N357S	ENST00000327367	NM_005902.3	357	aAc/aGc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10246929	10246929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	247	427	2	ENST00000340748.4:c.4476C>G	p.Phe1492Leu	p.F1492L	ENST00000340748		1492	ttC/ttG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0017098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	26	395	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0017098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	108	471	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	141	594	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42005582	42005587	+	inframe_deletion	In_Frame_Del	DEL	AGATCC	AGATCC	-			P-0017098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	121	397	0	ENST00000219905.7:c.3320_3325del	p.Asp1107_Pro1108del	p.D1107_P1108del	ENST00000219905	NM_001164273.1	1106	cgAGATCCa/cga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	145	474	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68842326	68842326	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0017099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	133	487	1	ENST00000261769.5:c.388-1G>A		p.X130_splice	ENST00000261769	NM_004360.3	130																																																																																
NCOR1	9611	MSKCC	GRCh37	17	15942871	15942890	+	frameshift_variant	Frame_Shift_Del	DEL	GTCATCAAAGCTTCCCATGA	GTCATCAAAGCTTCCCATGA	-			P-0017099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	68	575	2	ENST00000268712.3:c.6812_6831del	p.Leu2271GlnfsTer3	p.L2271Qfs*3	ENST00000268712	NM_006311.3	2271	cTCATGGGAAGCTTTGATGAC/c																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152055670	152055670	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0017099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	166	608	0	ENST00000262189.6:c.250+2T>C		p.X84_splice	ENST00000262189	NM_170606.2	84																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	577	629	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0017106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	149	388	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602413	10602413	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	470	685	0	ENST00000171111.5:c.1165G>T	p.Asp389Tyr	p.D389Y	ENST00000171111	NM_203500.1	389	Gac/Tac																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63662105	63662105	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	204	414	0	ENST00000279873.7:c.209T>C	p.Leu70Ser	p.L70S	ENST00000279873	NM_032199.2	70	tTa/tCa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912153	114912153	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	615	547	0	ENST00000543371.1:c.1223A>G	p.Gln408Arg	p.Q408R	ENST00000543371	NM_001198531.1	408	cAg/cGg																																																																															
ATM	472	MSKCC	GRCh37	11	108216611	108216612	+	missense_variant	Missense_Mutation	DNP	CG	CG	TT			P-0017106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	149	286	1	ENST00000278616.4:c.8560_8561delinsTT	p.Arg2854Phe	p.R2854F	ENST00000278616	NM_000051.3	2854	CGc/TTc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858938	57858939	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0017106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	522	642	1	ENST00000228682.2:c.434_435delinsAG	p.Pro145Gln	p.P145Q	ENST00000228682	NM_005269.2	145	cCC/cAG																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033466	48033466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	119	512	0	ENST00000234420.5:c.3770C>T	p.Ser1257Phe	p.S1257F	ENST00000234420	NM_000179.2	1257	tCt/tTt																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971127	13971127	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0017106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	111	154	0	ENST00000405192.2:c.802G>T	p.Gly268Cys	p.G268C	ENST00000405192	NM_001163147.1	268	Ggc/Tgc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513225	106513225	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	128	302	0	ENST00000359195.3:c.2129A>C	p.Gln710Pro	p.Q710P	ENST00000359195	NM_002649.2	710	cAg/cCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	515	679	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0017112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	737	831	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29541542	29541542	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	25	695	0	ENST00000358273.4:c.1466A>G	p.Tyr489Cys	p.Y489C	ENST00000358273	NM_001042492.2	489	tAt/tGt																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63817051	63817051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	257	339	0	ENST00000279873.7:c.1022G>A	p.Arg341Gln	p.R341Q	ENST00000279873	NM_032199.2	341	cGa/cAa																																																																															
ATM	472	MSKCC	GRCh37	11	108164182	108164182	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	119	355	0	ENST00000278616.4:c.4754G>C	p.Arg1585Thr	p.R1585T	ENST00000278616	NM_000051.3	1585	aGa/aCa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112126	115112135	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAGCGGCC	GCCAGCGGCC	-			P-0017112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	519	775	0	ENST00000257566.3:c.1605_1614del	p.Ala536TrpfsTer93	p.A536Wfs*93	ENST00000257566	NM_016569.3	535	gcGGCCGCTGGC/gc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112142	115112142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	548	713	2	ENST00000257566.3:c.1598G>A	p.Ser533Asn	p.S533N	ENST00000257566	NM_016569.3	533	aGc/aAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160744	56160745	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	161	402	0	ENST00000399503.3:c.1019dup	p.Phe341ValfsTer44	p.F341Vfs*44	ENST00000399503	NM_005921.1	340	gtg/gTtg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178091	56178091	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	292	400	0	ENST00000399503.3:c.3064C>T	p.Gln1022Ter	p.Q1022*	ENST00000399503	NM_005921.1	1022	Cag/Tag																																																																															
RAD21	5885	MSKCC	GRCh37	8	117862867	117862867	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	474	604	0	ENST00000297338.2:c.1610A>C	p.Glu537Ala	p.E537A	ENST00000297338	NM_006265.2	537	gAa/gCa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	85	605	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37884011	37884011	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150680317		P-0017113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1189	78	913	1	ENST00000269571.5:c.3482G>A	p.Arg1161Gln	p.R1161Q	ENST00000269571		1161	cGa/cAa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110082	115110083	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	126	1258	0	ENST00000257566.3:c.1795dup	p.Ser599LysfsTer93	p.S599Kfs*93	ENST00000257566	NM_016569.3	599	agc/aAgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	136	847	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	76	752	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578528	7578528	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	268	1142	1	ENST00000269305.4:c.402T>A	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	ttT/ttA																																																																															
FH	2271	MSKCC	GRCh37	1	241682991	241682991	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	121	483	0	ENST00000366560.3:c.32C>G	p.Ser11Trp	p.S11W	ENST00000366560	NM_000143.3	11	tCg/tGg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319899	8319899	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	117	570	1	ENST00000356435.5:c.5602G>T	p.Gly1868Ter	p.G1868*	ENST00000356435		1868	Gga/Tga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163889	152163889	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	98	577	0	ENST00000206249.3:c.610G>T	p.Gly204Cys	p.G204C	ENST00000206249	NM_000125.3	204	Ggc/Tgc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246021942	246021942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	142	678	0	ENST00000388985.4:c.932C>T	p.Ala311Val	p.A311V	ENST00000388985		311	gCa/gTa																																																																															
MPL	4352	MSKCC	GRCh37	1	43812574	43812574	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200454070		P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	74	768	0	ENST00000372470.3:c.1277G>A	p.Arg426Gln	p.R426Q	ENST00000372470	NM_005373.2	426	cGa/cAa																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400977	72400977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	104	683	0	ENST00000357731.5:c.194G>A	p.Gly65Glu	p.G65E	ENST00000357731	NM_173808.2	65	gGa/gAa																																																																															
PARP1	142	MSKCC	GRCh37	1	226567311	226567312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	59	609	0	ENST00000366794.5:c.1574dup	p.Leu525PhefsTer4	p.L525Ffs*4	ENST00000366794	NM_001618.3	525	tta/ttTa																																																																															
RET	5979	MSKCC	GRCh37	10	43609108	43609108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	128	893	0	ENST00000355710.3:c.1864C>A	p.Pro622Thr	p.P622T	ENST00000355710	NM_020975.4	622	Ccc/Acc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32945135	32945135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	168	669	1	ENST00000380152.3:c.8530G>A	p.Glu2844Lys	p.E2844K	ENST00000380152		2844	Gaa/Aaa																																																																															
RB1	5925	MSKCC	GRCh37	13	49037949	49037950	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	118	621	0	ENST00000267163.4:c.2191_2192dup	p.Pro732PhefsTer13	p.P732Ffs*13	ENST00000267163	NM_000321.2	730	gat/gaTCt																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4117540	4117540	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	41	335	0	ENST00000262948.5:c.180G>C	p.Gln60His	p.Q60H	ENST00000262948	NM_030662.3	60	caG/caC																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10265318	10265318	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	53	625	0	ENST00000340748.4:c.1728C>A	p.Phe576Leu	p.F576L	ENST00000340748		576	ttC/ttA																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276782	15276783	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	60	771	1	ENST00000263388.2:c.5482_5483delinsTT	p.Gly1828Leu	p.G1828L	ENST00000263388	NM_000435.2	1828	GGg/TTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955114	17955114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	181	857	0	ENST00000458235.1:c.113C>T	p.Pro38Leu	p.P38L	ENST00000458235	NM_000215.3	38	cCc/cTc																																																																															
CIC	23152	MSKCC	GRCh37	19	42797304	42797304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	181	945	1	ENST00000575354.2:c.3666G>T	p.Glu1222Asp	p.E1222D	ENST00000575354	NM_015125.3	1222	gaG/gaT																																																																															
MSH2	4436	MSKCC	GRCh37	2	47710004	47710004	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	68	687	2	ENST00000233146.2:c.2721G>T	p.Lys907Asn	p.K907N	ENST00000233146	NM_000251.2	907	aaG/aaT																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84390263	84390263	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	67	728	1	ENST00000321945.7:c.518T>A	p.Met173Lys	p.M173K	ENST00000321945	NM_139076.2	173	aTg/aAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	115	597	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0017121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	61	693	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0017121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	56	866	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584560	48584560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	50	659	1	ENST00000342988.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000342988	NM_005359.5	245	Cag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971088	21971088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	32	494	0	ENST00000361570.3:c.436C>T	p.Pro146Ser	p.P146S	ENST00000361570	NM_058195.3	146	Cct/Tct																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971095	21971099	+	frameshift_variant	Frame_Shift_Del	DEL	TCCCG	TCCCG	-			P-0017121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	24	463	0	ENST00000304494.5:c.259_263del	p.Arg87GlyfsTer31	p.R87Gfs*31	ENST00000304494	NM_000077.4	87	CGGGAg/g																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44950066	44950066	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	120	593	1	ENST00000377967.4:c.3835C>T	p.Arg1279Ter	p.R1279*	ENST00000377967	NM_021140.2	1279	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577152	7577154	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ACC	ACC	-			P-0017154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	100	569	0	ENST00000269305.4:c.784_786delGGT	p.Gly262del	p.G262del	ENST00000269305	NM_001126112.2	262	GGT/-																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416459	49416459	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	61	508	0	ENST00000301067.7:c.16252G>C	p.Glu5418Gln	p.E5418Q	ENST00000301067	NM_003482.3	5418	Gaa/Caa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246018	41246018	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	143	641	0	ENST00000357654.3:c.1530delA	p.Gly511AlafsTer21	p.G511Afs*21	ENST00000357654	NM_007294.3	510	tcA/tc																																																																															
TP63	8626	MSKCC	GRCh37	3	189612002	189612002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	89	366	0	ENST00000264731.3:c.1754C>T	p.Ala585Val	p.A585V	ENST00000264731	NM_003722.4	585	gCa/gTa																																																																															
CCND3	896	MSKCC	GRCh37	6	41908296	41908296	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	62	629	0	ENST00000372991.4:c.226G>C	p.Glu76Gln	p.E76Q	ENST00000372991	NM_001760.3	76	Gaa/Caa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	83	616	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MAX	4149	MSKCC	GRCh37	14	65560494	65560494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	62	441	0	ENST00000358664.4:c.103C>T	p.Arg35Cys	p.R35C	ENST00000358664	NM_002382.4	35	Cgt/Tgt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462923	120462923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	31	361	0	ENST00000256646.2:c.5408C>T	p.Pro1803Leu	p.P1803L	ENST00000256646	NM_024408.3	1803	cCa/cTa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646588	23646588	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	69	442	0	ENST00000261584.4:c.1279del	p.Ala427LeufsTer25	p.A427Lfs*25	ENST00000261584	NM_024675.3	427	Gct/ct																																																																															
APC	324	MSKCC	GRCh37	5	112179128	112179128	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	48	404	0	ENST00000257430.4:c.7837A>G	p.Arg2613Gly	p.R2613G	ENST00000257430	NM_000038.5	2613	Aga/Gga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	83	610	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881440	37881440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	88	550	0	ENST00000269571.5:c.2632C>T	p.His878Tyr	p.H878Y	ENST00000269571		878	Cat/Tat																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171607	36171607	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	82	217	0	ENST00000300305.3:c.958C>T	p.Arg320Ter	p.R320*	ENST00000300305		320	Cga/Tga																																																																															
CDH1	999	MSKCC	GRCh37	16	68857530	68857531	+	splice_donor_variant	Splice_Site	DEL	GT	GT	-			P-0017156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	69	377	0	ENST00000261769.5:c.2164+1_2164+2del		p.X722_splice	ENST00000261769	NM_004360.3	722																																																																																
STAT3	6774	MSKCC	GRCh37	17	40475137	40475137	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	90	492	0	ENST00000264657.5:c.1773G>C	p.Lys591Asn	p.K591N	ENST00000264657	NM_139276.2	591	aaG/aaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	108	702	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728701	190728701	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	53	554	0	ENST00000441310.2:c.2089G>T	p.Val697Leu	p.V697L	ENST00000441310	NM_000534.4	697	Gta/Tta																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436662	52436662	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	61	688	0	ENST00000460680.1:c.2012A>G	p.Tyr671Cys	p.Y671C	ENST00000460680	NM_004656.3	671	tAc/tGc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44941820	44941820	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0017157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	58	240	2	ENST00000377967.4:c.3145-1G>T		p.X1049_splice	ENST00000377967	NM_021140.2	1049																																																																																
FAM175A	84142	MSKCC	GRCh37	4	84393376	84393377	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	TTAA			P-0017158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	14	396	0	ENST00000321945.7:c.280_281insTTAA	p.Lys94IlefsTer21	p.K94Ifs*21	ENST00000321945	NM_139076.2	94	aag/aTTAAag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0017166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	132	708	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	416	742	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	163	599	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602255	10602255	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0017166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	33	546	1	ENST00000171111.5:c.1323G>T	p.Glu441Asp	p.E441D	ENST00000171111	NM_203500.1	441	gaG/gaT																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468065	50468065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	140	378	0	ENST00000331340.3:c.1300G>A	p.Ala434Thr	p.A434T	ENST00000331340	NM_006060.4	434	Gcc/Acc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937620	32937621	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	253	819	0	ENST00000380152.3:c.8282dup	p.Pro2762SerfsTer2	p.P2762Sfs*2	ENST00000380152		2761	tct/tCct																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355347	15355347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	115	359	0	ENST00000263377.2:c.2276C>T	p.Pro759Leu	p.P759L	ENST00000263377	NM_058243.2	759	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0017170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	416	989	2	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974800	15974800	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	255	665	0	ENST00000268712.3:c.4075A>C	p.Ile1359Leu	p.I1359L	ENST00000268712	NM_006311.3	1359	Att/Ctt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212264	36212264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	101	892	0	ENST00000222270.7:c.2015G>A	p.Gly672Glu	p.G672E	ENST00000222270	NM_014727.1	672	gGg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112175158	112175159	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	145	367	0	ENST00000257430.4:c.3869dup	p.Asn1290LysfsTer11	p.N1290Kfs*11	ENST00000257430	NM_000038.5	1289	-/A																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061178	38061195	+	inframe_deletion	In_Frame_Del	DEL	GCTTCTCGCACTTGAAGC	GCTTCTCGCACTTGAAGC	-			P-0017172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	44	343	1	ENST00000250448.2:c.794_811delGCTTCAAGTGCGAGAAGC	p.Arg265_Lys270del	p.R265_K270del	ENST00000250448	NM_004496.3	265	cGCTTCAAGTGCGAGAAGCag/cag																																																																															
CDH1	999	MSKCC	GRCh37	16	68835758	68835794	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AATACAGTGGGGCACCACCACCGCCCCCCGCCCCATC	AATACAGTGGGGCACCACCACCGCCCCCCGCCCCATC	-			P-0017172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	102	820	0	ENST00000261769.5:c.350_386del	p.Asn117ArgfsTer86	p.N117Rfs*86	ENST00000261769	NM_004360.3	117	AATACAGTGGGGCACCACCACCGCCCCCCGCCCCATCag/ag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0017174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	2451	1008	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0017174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	285	1220	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	30956886	30956889	+	frameshift_variant	Frame_Shift_Del	DEL	TTTA	TTTA	-			P-0017174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	232	810	0	ENST00000375687.4:c.213_216del	p.Phe71LeufsTer48	p.F71Lfs*48	ENST00000375687	NM_015338.5	71	tTTTAt/tt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032579	47032579	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	189	419	0	ENST00000329236.7:c.254del	p.Met85SerfsTer104	p.M85Sfs*104	ENST00000329236	NM_001204466.1	85	aTg/ag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	237	736	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	193	558	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120512330	120512343	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCAGGCATTCAT	CAGCAGGCATTCAT	-			P-0017182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	137	416	0	ENST00000256646.2:c.899_912del	p.Asp300AlafsTer30	p.D300Afs*30	ENST00000256646	NM_024408.3	300	gATGAATGCCTGCTG/g																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025619	1025619	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	179	396	0	ENST00000358495.3:c.756G>C	p.Glu252Asp	p.E252D	ENST00000358495	NM_134424.2	252	gaG/gaC																																																																															
CBFB	865	MSKCC	GRCh37	16	67132612	67132658	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GGCAAGAAGACAACAAGACCCTAGTCCTGGTTCCAATTTAGGTGGTG	GGCAAGAAGACAACAAGACCCTAGTCCTGGTTCCAATTTAGGTGGTG	-			P-0017182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	31	526	0	ENST00000412916.2:c.496_542del		p.X166_splice	ENST00000412916		166																																																																																
MLH1	4292	MSKCC	GRCh37	3	37038180	37038180	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	100	296	1	ENST00000231790.2:c.187G>T	p.Asp63Tyr	p.D63Y	ENST00000231790	NM_000249.3	63	Gac/Tac																																																																															
SMO	6608	MSKCC	GRCh37	7	128852276	128852276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	182	544	0	ENST00000249373.3:c.2348C>T	p.Ala783Val	p.A783V	ENST00000249373	NM_005631.4	783	gCa/gTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0017184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1132	116	589	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044719	47044719	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	131	699	0	ENST00000329236.7:c.1885C>T	p.Gln629Ter	p.Q629*	ENST00000329236	NM_001204466.1	629	Cag/Tag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737780	145737780	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	79	527	0	ENST00000428558.2:c.3050G>C	p.Arg1017Thr	p.R1017T	ENST00000428558	NM_004260.3	1017	aGg/aCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	419	553	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0017185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	383	483	0	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71943329	71943329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	554	754	0	ENST00000298229.2:c.1661C>T	p.Ser554Leu	p.S554L	ENST00000298229	NM_001567.3	554	tCa/tTa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481842	56481842	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	263	737	0	ENST00000267101.3:c.770C>G	p.Pro257Arg	p.P257R	ENST00000267101	NM_001982.3	257	cCt/cGt																																																																															
POLE	5426	MSKCC	GRCh37	12	133236077	133236077	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	308	522	0	ENST00000320574.5:c.3079T>G	p.Ser1027Ala	p.S1027A	ENST00000320574	NM_006231.2	1027	Tct/Gct																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872909	136872909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	206	429	0	ENST00000241393.3:c.589G>T	p.Val197Phe	p.V197F	ENST00000241393	NM_003467.2	197	Gtt/Ttt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	352	483	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	506	527	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176118142	176118143	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0017187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	134	401	1	ENST00000367669.3:c.830_831del	p.Glu277AlafsTer17	p.E277Afs*17	ENST00000367669	NM_022457.5	277	gAG/g																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653785	89653785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	251	416	2	ENST00000371953.3:c.83T>C	p.Ile28Thr	p.I28T	ENST00000371953	NM_000314.4	28	aTt/aCt																																																																															
NF1	4763	MSKCC	GRCh37	17	29676271	29676271	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0017187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	165	541	0	ENST00000358273.4:c.7321+2T>C		p.X2441_splice	ENST00000358273	NM_001042492.2	2441																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176522635	176522636	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	387	692	0	ENST00000292408.4:c.1734dup	p.Ser579GlufsTer3	p.S579Efs*3	ENST00000292408	NM_213647.1	578	cgg/cGgg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967893	93967893	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	569	728	1	ENST00000369303.4:c.2034C>A	p.Asp678Glu	p.D678E	ENST00000369303	NM_004440.3	678	gaC/gaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0017188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	143	652	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428249	33428249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	73	412	0	ENST00000335858.7:c.538A>G	p.Met180Val	p.M180V	ENST00000335858	NM_133629.2	180	Atg/Gtg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121097	29121097	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	139	662	0	ENST00000328354.6:c.460A>G	p.Asn154Asp	p.N154D	ENST00000328354	NM_007194.3	154	Aac/Gac																																																																															
TERT	7015	MSKCC	GRCh37	5	1293448	1293448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	125	611	0	ENST00000310581.5:c.1553C>T	p.Ala518Val	p.A518V	ENST00000310581	NM_198253.2	518	gCt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0017189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	122	755	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0017189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	131	670	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906754	32906754	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	104	857	0	ENST00000380152.3:c.1139G>C	p.Ser380Thr	p.S380T	ENST00000380152		380	aGt/aCt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440614	56440652	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTGGAGGTCTAGTGTGCTTACCCAGGCCGGGGGCTCCT	TCTGGAGGTCTAGTGTGCTTACCCAGGCCGGGGGCTCCT	-			P-0017189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	79	479	0	ENST00000407977.2:c.566_582+22del		p.X189_splice	ENST00000407977		189																																																																																
AXIN2	8313	MSKCC	GRCh37	17	63533656	63533687	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGGGGGCAGGCGCCCGGCGAGGCGGCCGCG	GGAGGGGGCAGGCGCCCGGCGAGGCGGCCGCG	-			P-0017189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	100	457	0	ENST00000307078.5:c.1467_1498del	p.Ala490ArgfsTer127	p.A490Rfs*127	ENST00000307078	NM_004655.3	489	ccCGCGGCCGCCTCGCCGGGCGCCTGCCCCCTCCtc/cctc																																																																															
MED12	9968	MSKCC	GRCh37	X	70355033	70355059	+	inframe_deletion	In_Frame_Del	DEL	AGCCACAGGGCTCCCTTATCGATACCA	AGCCACAGGGCTCCCTTATCGATACCA	-			P-0017189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	72	859	0	ENST00000374080.3:c.4957_4983del	p.Pro1653_Lys1661del	p.P1653_K1661del	ENST00000374080		1652	gAGCCACAGGGCTCCCTTATCGATACCAag/gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0017190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	100	488	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0017190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	46	357	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245391	46245391	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	73	370	0	ENST00000334344.6:c.3485C>A	p.Thr1162Asn	p.T1162N	ENST00000334344	NM_152641.2	1162	aCc/aAc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643695	38643695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	52	433	1	ENST00000299084.4:c.1165G>A	p.Asp389Asn	p.D389N	ENST00000299084	NM_152594.2	389	Gat/Aat																																																																															
KIT	3815	MSKCC	GRCh37	4	55561868	55561868	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	32	329	0	ENST00000288135.5:c.258G>C	p.Lys86Asn	p.K86N	ENST00000288135	NM_000222.2	86	aaG/aaC																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636924	176636924	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	68	480	2	ENST00000439151.2:c.1524G>T	p.Arg508Ser	p.R508S	ENST00000439151	NM_022455.4	508	agG/agT																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444326	50444326	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	28	241	0	ENST00000331340.3:c.256G>C	p.Asp86His	p.D86H	ENST00000331340	NM_006060.4	86	Gat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	243	938	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0017191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	30	201	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578447	+	frameshift_variant	Frame_Shift_Del	DEL	GCTTGTAGATG	GCTTGTAGATG	-			P-0017191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	134	930	0	ENST00000269305.4:c.483_493del	p.Ile162ValfsTer15	p.I162Vfs*15	ENST00000269305	NM_001126112.2	161	gcCATCTACAAGCag/gcag																																																																															
RARA	5914	MSKCC	GRCh37	17	38506095	38506100	+	inframe_deletion	In_Frame_Del	DEL	CTGCAT	CTGCAT	-			P-0017191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	119	940	0	ENST00000254066.5:c.388_393del	p.Cys130_Ile131del	p.C130_I131del	ENST00000254066	NM_000964.3	129	aaCTGCATc/aac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575107	48575107	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	38	682	0	ENST00000342988.3:c.301T>C	p.Trp101Arg	p.W101R	ENST00000342988	NM_005359.5	101	Tgg/Cgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306544	41306544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	93	733	0	ENST00000373198.4:c.1115C>T	p.Pro372Leu	p.P372L	ENST00000373198	NM_133170.3	372	cCg/cTg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011138	12011138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	43	499	0	ENST00000353533.5:c.545C>G	p.Ser182Cys	p.S182C	ENST00000353533	NM_003010.3	182	tCt/tGt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188803	32188803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	121	651	0	ENST00000375023.3:c.751C>A	p.Leu251Met	p.L251M	ENST00000375023	NM_004557.3	251	Ctg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	216	791	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045872	47045872	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0017196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	160	388	0	ENST00000329236.7:c.2434-1G>T		p.X812_splice	ENST00000329236	NM_001204466.1	812																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	67	558	0	ENST00000342988.3:c.1055G>T	p.Gly352Val	p.G352V	ENST00000342988	NM_005359.5	352	gGa/gTa																																																																															
ALK	238	MSKCC	GRCh37	2	29448339	29448339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	154	1236	2	ENST00000389048.3:c.3160G>A	p.Gly1054Ser	p.G1054S	ENST00000389048	NM_004304.4	1054	Ggc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	818	815	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577526	7577526	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	173	746	0	ENST00000269305.4:c.755T>C	p.Leu252Pro	p.L252P	ENST00000269305	NM_001126112.2	252	cTc/cCc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044898	47044898	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	123	1100	2	ENST00000329236.7:c.1990C>T	p.Gln664Ter	p.Q664*	ENST00000329236	NM_001204466.1	664	Cag/Tag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11186697	11186697	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	88	633	0	ENST00000361445.4:c.6508del	p.Arg2170GlyfsTer3	p.R2170Gfs*3	ENST00000361445	NM_004958.3	2170	Cgg/gg																																																																															
TERT	7015	MSKCC	GRCh37	5	1254582	1254582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	173	776	4	ENST00000310581.5:c.3196C>T	p.Pro1066Ser	p.P1066S	ENST00000310581	NM_198253.2	1066	Ccc/Tcc																																																																															
XIAP	331	MSKCC	GRCh37	X	123022474	123022474	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	41	915	0	ENST00000355640.3:c.883G>T	p.Gly295Cys	p.G295C	ENST00000355640		295	Ggt/Tgt																																																																															
PARP1	142	MSKCC	GRCh37	1	226589590	226590017	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCTGTGTGGTGGGAGGGGGAGGGGGTACTGGAAACTCTTTGTTCTTTGCTTACTTTTGCCATGAACAAAAATAAAGTATATTAAAAACAAAACAACTTTAAAGGCTACATTCCAAGCACCTGGAAAAACAAAATACCAAATATCATGCAACAGATGATGCTGAGTCCAGGAGGTGTTGCTGAAATAACATGGGCACCATACGCTTGATCTGCACATGTGGGAGAGGGCAAGCTGGGGGAGGTTTGCTTTGCTCTCTGAGACGAGGCCCTCCTGGGAGCTTCAGGGTGGGGGCTGAATGCCCATGCTGCCCCAGTATGTACACACCTGTCACTCCTCCAGCTTCCGCTGTCTTCTTGACTTTCTGCTGGTCATCCCACCGAAGCTCAGAGAACCCATCCACCTCAACGTCAGGGTGCCGGATGGAGTG	GCCTGTGTGGTGGGAGGGGGAGGGGGTACTGGAAACTCTTTGTTCTTTGCTTACTTTTGCCATGAACAAAAATAAAGTATATTAAAAACAAAACAACTTTAAAGGCTACATTCCAAGCACCTGGAAAAACAAAATACCAAATATCATGCAACAGATGATGCTGAGTCCAGGAGGTGTTGCTGAAATAACATGGGCACCATACGCTTGATCTGCACATGTGGGAGAGGGCAAGCTGGGGGAGGTTTGCTTTGCTCTCTGAGACGAGGCCCTCCTGGGAGCTTCAGGGTGGGGGCTGAATGCCCATGCTGCCCCAGTATGTACACACCTGTCACTCCTCCAGCTTCCGCTGTCTTCTTGACTTTCTGCTGGTCATCCCACCGAAGCTCAGAGAACCCATCCACCTCAACGTCAGGGTGCCGGATGGAGTG	-			P-0017203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	74	2	0	ENST00000366794.5:c.184_286+325del		p.X62_splice	ENST00000366794	NM_001618.3	62																																																																																
BIRC3	330	MSKCC	GRCh37	11	102206732	102206732	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	158	635	0	ENST00000263464.3:c.1360C>A	p.Leu454Ile	p.L454I	ENST00000263464	NM_001165.4	454	Ctt/Att																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910617	32910617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	174	752	0	ENST00000380152.3:c.2125C>G	p.Leu709Val	p.L709V	ENST00000380152		709	Ctg/Gtg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610393	81610393	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	148	610	0	ENST00000298171.2:c.1991T>C	p.Val664Ala	p.V664A	ENST00000298171	NM_000369.2	664	gTa/gCa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610402	81610402	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	146	605	0	ENST00000298171.2:c.2000A>C	p.Tyr667Ser	p.Y667S	ENST00000298171	NM_000369.2	667	tAt/tCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	277	597	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93955034	93955034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	167	361	0	ENST00000369303.4:c.2864T>A	p.Val955Glu	p.V955E	ENST00000369303	NM_004440.3	955	gTa/gAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911801	32911803	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0017203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	227	864	0	ENST00000380152.3:c.3310_3312del	p.Thr1104del	p.T1104del	ENST00000380152		1103	ttAACa/tta																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520009		P-0017207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	335	492	1	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168803	56168804	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0017207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	274	519	0	ENST00000399503.3:c.1658dup	p.Tyr553Ter	p.Y553*	ENST00000399503	NM_005921.1	553	tac/tAac																																																																															
SESN3	143686	MSKCC	GRCh37	11	94963996	94963996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	117	169	1	ENST00000536441.1:c.29C>T	p.Ala10Val	p.A10V	ENST00000536441	NM_144665.3	10	gCc/gTc																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944983	31944983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	535	582	0	ENST00000340398.3:c.118C>T	p.Arg40Cys	p.R40C	ENST00000340398	NM_001013699.2	40	Cgc/Tgc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659851	227659851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	243	389	0	ENST00000305123.5:c.3604C>T	p.Pro1202Ser	p.P1202S	ENST00000305123	NM_005544.2	1202	Ccc/Tcc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177079	56177080	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0017207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	308	255	0	ENST00000399503.3:c.2350_2351dup	p.Glu785LeufsTer15	p.E785Lfs*15	ENST00000399503	NM_005921.1	783	-/GC																																																																															
APC	324	MSKCC	GRCh37	5	112175773	112175773	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	194	339	0	ENST00000257430.4:c.4482A>C	p.Glu1494Asp	p.E1494D	ENST00000257430	NM_000038.5	1494	gaA/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	94	515	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0017213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	79	561	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371734	55371734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	44	437	0	ENST00000297316.4:c.424C>T	p.Arg142Cys	p.R142C	ENST00000297316	NM_022454.3	142	Cgc/Tgc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56480335	56480335	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	151	552	0	ENST00000267101.3:c.442T>C	p.Tyr148His	p.Y148H	ENST00000267101	NM_001982.3	148	Tat/Cat																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18544145	18544145	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	98	591	0	ENST00000266497.5:c.1962A>G	p.Ile654Met	p.I654M	ENST00000266497		654	atA/atG																																																																															
SOS1	6654	MSKCC	GRCh37	2	39239343	39239343	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	29	729	0	ENST00000402219.2:c.2314G>C	p.Glu772Gln	p.E772Q	ENST00000402219	NM_005633.3	772	Gag/Cag																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458486	12458486	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	90	729	0	ENST00000287820.6:c.1103T>C	p.Leu368Pro	p.L368P	ENST00000287820	NM_015869.4	368	cTc/cCc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860113	151860113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	77	471	0	ENST00000262189.6:c.10549C>T	p.Pro3517Ser	p.P3517S	ENST00000262189	NM_170606.2	3517	Cct/Tct																																																																															
LYN	4067	MSKCC	GRCh37	8	56922523	56922550	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGAGAACTGCCCAGATGAGCTCTATG	GTGGAGAACTGCCCAGATGAGCTCTATG	-			P-0017213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	31	543	0	ENST00000519728.1:c.1393_1420del	p.Val465ThrfsTer3	p.V465Tfs*3	ENST00000519728	NM_002350.3	465	GTGGAGAACTGCCCAGATGAGCTCTATGac/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0017214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1441	64	880	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400866	72400866	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	22	361	0	ENST00000357731.5:c.305G>T	p.Ser102Ile	p.S102I	ENST00000357731	NM_173808.2	102	aGc/aTc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0017228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	363	776	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781440	135781440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	309	417	0	ENST00000298552.3:c.1525C>T	p.Arg509Ter	p.R509*	ENST00000298552	NM_001162426.1	509	Cga/Tga																																																																															
PARP1	142	MSKCC	GRCh37	1	226555273	226555273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	120	458	0	ENST00000366794.5:c.2314G>A	p.Glu772Lys	p.E772K	ENST00000366794	NM_001618.3	772	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115957	8115960	+	frameshift_variant	Frame_Shift_Del	DEL	CCCT	CCCT	-			P-0017228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	160	341	0	ENST00000346208.3:c.1305_1308del	p.Ser436AlafsTer38	p.S436Afs*38	ENST00000346208		435	CCCTcc/cc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	262	561	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259439	55259439	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs397517126		P-0017231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	173	404	0	ENST00000275493.2:c.2497T>G	p.Leu833Val	p.L833V	ENST00000275493	NM_005228.3	833	Ttg/Gtg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55224337	55224337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	170	539	0	ENST00000275493.2:c.1118C>T	p.Pro373Leu	p.P373L	ENST00000275493	NM_005228.3	373	cCg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730876	40730876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	200	656	0	ENST00000373198.4:c.3659G>A	p.Arg1220Gln	p.R1220Q	ENST00000373198	NM_133170.3	1220	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0017231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	191	549	0	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
BCL2L1	598	MSKCC	GRCh37	20	30309941	30309941	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	176	473	0	ENST00000307677.4:c.81T>A	p.Phe27Leu	p.F27L	ENST00000307677	NM_138578.1	27	ttT/ttA																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047299	180047299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	158	514	0	ENST00000261937.6:c.2416G>A	p.Ala806Thr	p.A806T	ENST00000261937	NM_182925.4	806	Gca/Aca																																																																															
IRF4	3662	MSKCC	GRCh37	6	397128	397128	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	126	364	1	ENST00000380956.4:c.513G>T	p.Met171Ile	p.M171I	ENST00000380956	NM_001195286.1	171	atG/atT																																																																															
SYK	6850	MSKCC	GRCh37	9	93650797	93650797	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0017231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	33	227	0	ENST00000375746.1:c.1723G>A	p.Gly575Arg	p.G575R	ENST00000375746	NM_001174167.1	575	Ggg/Agg																																																																															
ATM	472	MSKCC	GRCh37	11	108218030	108218030	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	326	380	0	ENST00000278616.4:c.8609A>G	p.Asp2870Gly	p.D2870G	ENST00000278616	NM_000051.3	2870	gAt/gGt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137085	64137085	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	27	296	0	ENST00000334205.4:c.1596del	p.Lys532AsnfsTer16	p.K532Nfs*16	ENST00000334205	NM_003942.2	532	aaG/aa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279910	46279910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1330	103	952	1	ENST00000371998.3:c.3836C>T	p.Ala1279Val	p.A1279V	ENST00000371998		1279	gCc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750600586		P-0017238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	379	893	1	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581229	48581229	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0017238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	205	669	0	ENST00000342988.3:c.533C>G	p.Ser178Ter	p.S178*	ENST00000342988	NM_005359.5	178	tCa/tGa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	192	636	0	ENST00000326873.7:c.709G>C	p.Asp237His	p.D237H	ENST00000326873	NM_000455.4	237	Gac/Cac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600428	10600428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	268	852	1	ENST00000171111.5:c.1427G>T	p.Gly476Val	p.G476V	ENST00000171111	NM_203500.1	476	gGg/gTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420213	88420213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	86	504	0	ENST00000360948.2:c.2473C>A	p.His825Asn	p.H825N	ENST00000360948	NM_001012338.2	825	Cat/Aat																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33430564	33430564	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0017238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	202	636	0	ENST00000335858.7:c.241-1G>C		p.X81_splice	ENST00000335858	NM_133629.2	81																																																																																
MSH2	4436	MSKCC	GRCh37	2	47710071	47710071	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	116	419	0	ENST00000233146.2:c.2788A>C	p.Ile930Leu	p.I930L	ENST00000233146	NM_000251.2	930	Ata/Cta																																																																															
SDHA	6389	MSKCC	GRCh37	5	235454	235454	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0017238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	105	789	0	ENST00000264932.6:c.1260G>C	p.Gln420His	p.Q420H	ENST00000264932	NM_004168.2	420	caG/caC																																																																															
RAD21	5885	MSKCC	GRCh37	8	117868472	117868472	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	280	562	0	ENST00000297338.2:c.870G>T	p.Met290Ile	p.M290I	ENST00000297338	NM_006265.2	290	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	281	656	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
MPL	4352	MSKCC	GRCh37	1	43804985	43804985	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	251	405	0	ENST00000372470.3:c.435C>A	p.Ser145Arg	p.S145R	ENST00000372470	NM_005373.2	145	agC/agA																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45795040	45795040	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs147923905		P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	97	562	0	ENST00000372115.3:c.1546G>T	p.Asp516Tyr	p.D516Y	ENST00000372115	NM_001048171.1	516	Gat/Tat																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46546374	46546374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	228	544	0	ENST00000262741.5:c.155G>T	p.Gly52Val	p.G52V	ENST00000262741	NM_003629.3	52	gGa/gTa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175957480	175957480	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	87	554	0	ENST00000367669.3:c.1916A>T	p.His639Leu	p.H639L	ENST00000367669	NM_022457.5	639	cAt/cTt																																																																															
PARP1	142	MSKCC	GRCh37	1	226555952	226555953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	120	488	0	ENST00000366794.5:c.2223_2224dup	p.His742ProfsTer6	p.H742Pfs*6	ENST00000366794	NM_001618.3	742	cac/cCCac																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115975	8115975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	86	269	1	ENST00000346208.3:c.1321G>T	p.Ala441Ser	p.A441S	ENST00000346208		441	Gcc/Tcc																																																																															
WT1	7490	MSKCC	GRCh37	11	32449504	32449504	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	81	483	0	ENST00000332351.3:c.870C>A	p.Ser290Arg	p.S290R	ENST00000332351	NM_024426.4	290	agC/agA																																																																															
ATM	472	MSKCC	GRCh37	11	108178629	108178629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	38	235	1	ENST00000278616.4:c.5680G>A	p.Glu1894Lys	p.E1894K	ENST00000278616	NM_000051.3	1894	Gag/Aag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118366540	118366540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	121	659	0	ENST00000534358.1:c.5489C>T	p.Pro1830Leu	p.P1830L	ENST00000534358	NM_005933.3	1830	cCc/cTc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18524215	18524215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	155	720	0	ENST00000266497.5:c.1727C>A	p.Ala576Glu	p.A576E	ENST00000266497		576	gCg/gAg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46125019	46125019	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	88	229	0	ENST00000334344.6:c.209del	p.Gly70GlufsTer20	p.G70Efs*20	ENST00000334344	NM_152641.2	69	tGg/tg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518688	103518688	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	196	389	0	ENST00000355739.4:c.2276G>C	p.Arg759Pro	p.R759P	ENST00000355739	NM_000123.3	759	cGg/cCg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569984	95569984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	127	455	0	ENST00000343455.3:c.3749C>T	p.Ser1250Phe	p.S1250F	ENST00000343455	NM_177438.2	1250	tCt/tTt																																																																															
CDH1	999	MSKCC	GRCh37	16	68867235	68867235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	91	602	0	ENST00000261769.5:c.2482G>A	p.Asp828Asn	p.D828N	ENST00000261769	NM_004360.3	828	Gat/Aat																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81927349	81927350	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	198	633	1	ENST00000359376.3:c.1022_1023delinsAT	p.Ser341Tyr	p.S341Y	ENST00000359376	NM_002661.3	341	tCC/tAT																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969845	81969845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	216	723	0	ENST00000359376.3:c.2914G>T	p.Val972Phe	p.V972F	ENST00000359376	NM_002661.3	972	Gtc/Ttc																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66521929	66521929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	170	349	0	ENST00000358598.2:c.584G>T	p.Gly195Val	p.G195V	ENST00000358598	NM_212471.2	195	gGg/gTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965599	25965599	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	58	567	0	ENST00000435504.4:c.3607C>T	p.Gln1203Ter	p.Q1203*	ENST00000435504		1203	Cag/Tag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25990587	25990587	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	102	507	0	ENST00000435504.4:c.640del	p.Glu214LysfsTer30	p.E214Kfs*30	ENST00000435504		214	Gaa/aa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267451	198267451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	143	534	0	ENST00000335508.6:c.1906G>T	p.Ala636Ser	p.A636S	ENST00000335508	NM_012433.2	636	Gcc/Tcc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31388675	31388675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	108	549	1	ENST00000328111.2:c.1940G>A	p.Gly647Asp	p.G647D	ENST00000328111	NM_006892.3	647	gGc/gAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41514510	41514510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	226	710	3	ENST00000373198.4:c.151G>T	p.Gly51Trp	p.G51W	ENST00000373198	NM_133170.3	51	Ggg/Tgg																																																																															
KDR	3791	MSKCC	GRCh37	4	55946306	55946306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	84	216	0	ENST00000263923.4:c.3873G>T	p.Arg1291Ser	p.R1291S	ENST00000263923	NM_002253.2	1291	agG/agT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197806	66197806	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	53	448	0	ENST00000273854.3:c.2893G>T	p.Gly965Trp	p.G965W	ENST00000273854	NM_004439.5	965	Ggg/Tgg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143043366	143043366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	163	546	1	ENST00000262992.4:c.2050G>T	p.Val684Phe	p.V684F	ENST00000262992	NM_001101669.1	684	Gtt/Ttt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187527229	187527229	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	93	438	0	ENST00000441802.2:c.10345A>T	p.Ile3449Phe	p.I3449F	ENST00000441802	NM_005245.3	3449	Atc/Ttc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541661	187541661	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199867416		P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	45	279	0	ENST00000441802.2:c.6079C>T	p.Arg2027Cys	p.R2027C	ENST00000441802	NM_005245.3	2027	Cgc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542897	187542897	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	43	433	0	ENST00000441802.2:c.4843G>T	p.Val1615Phe	p.V1615F	ENST00000441802	NM_005245.3	1615	Gtc/Ttc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512322	149512322	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	98	321	0	ENST00000261799.4:c.1118del	p.Ser373TrpfsTer9	p.S373Wfs*9	ENST00000261799	NM_002609.3	373	tCg/tg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149514370	149514370	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	121	492	0	ENST00000261799.4:c.574A>T	p.Thr192Ser	p.T192S	ENST00000261799	NM_002609.3	192	Acc/Tcc																																																																															
IRF4	3662	MSKCC	GRCh37	6	407480	407480	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	206	468	0	ENST00000380956.4:c.1238T>C	p.Leu413Pro	p.L413P	ENST00000380956	NM_001195286.1	413	cTa/cCa																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910647	29910647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	93	865	1	ENST00000376809.5:c.187G>A	p.Asp63Asn	p.D63N	ENST00000376809	NM_002116.7	63	Gac/Aac																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165365	32165365	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	279	665	0	ENST00000375023.3:c.4763T>A	p.Val1588Glu	p.V1588E	ENST00000375023	NM_004557.3	1588	gTg/gAg																																																																															
FYN	2534	MSKCC	GRCh37	6	112025292	112025292	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	81	502	0	ENST00000368678.4:c.457A>T	p.Lys153Ter	p.K153*	ENST00000368678		153	Aaa/Taa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150022977	150022977	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	73	509	0	ENST00000253339.5:c.286C>G	p.Arg96Gly	p.R96G	ENST00000253339		96	Cgg/Ggg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521881	157521881	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	87	452	0	ENST00000346085.5:c.4153A>T	p.Lys1385Ter	p.K1385*	ENST00000346085	NM_020732.3	1385	Aag/Tag																																																																															
PARK2	5071	MSKCC	GRCh37	6	161807870	161807870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	93	573	0	ENST00000366898.1:c.1123G>T	p.Gly375Trp	p.G375W	ENST00000366898	NM_004562.2	375	Ggg/Tgg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739909	41739909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	299	479	2	ENST00000242208.4:c.64C>A	p.Pro22Thr	p.P22T	ENST00000242208	NM_002192.2	22	Ccc/Acc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146933	38146933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	87	921	2	ENST00000317025.8:c.3209C>T	p.Pro1070Leu	p.P1070L	ENST00000317025	NM_023034.1	1070	cCc/cTc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38314996	38314996	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	311	821	0	ENST00000425967.3:c.68C>A	p.Ala23Asp	p.A23D	ENST00000425967	NM_001174067.1	23	gCc/gAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449742	8449742	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	148	477	0	ENST00000356435.5:c.3971T>A	p.Leu1324His	p.L1324H	ENST00000356435		1324	cTt/cAt																																																																															
TEK	7010	MSKCC	GRCh37	9	27180322	27180322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	75	420	0	ENST00000380036.4:c.986G>A	p.Cys329Tyr	p.C329Y	ENST00000380036	NM_000459.3	329	tGt/tAt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410361	63410361	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	228	885	0	ENST00000330258.3:c.2806G>C	p.Glu936Gln	p.E936Q	ENST00000330258	NM_152424.3	936	Gaa/Caa																																																																															
ATRX	546	MSKCC	GRCh37	X	76855290	76855290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	124	434	0	ENST00000373344.5:c.5698-1G>A		p.X1900_splice	ENST00000373344	NM_000489.3	1900																																																																																
ATRX	546	MSKCC	GRCh37	X	76888751	76888751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	173	783	0	ENST00000373344.5:c.5078G>A	p.Arg1693Lys	p.R1693K	ENST00000373344	NM_000489.3	1693	aGg/aAg																																																																															
BTK	695	MSKCC	GRCh37	X	100613415	100613415	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	120	543	0	ENST00000308731.7:c.985G>T	p.Gly329Trp	p.G329W	ENST00000308731	NM_000061.2	329	Ggg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1136	79	708	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	112	395	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	109	381	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0017249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	147	314	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0017249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	46	312	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670327	134670327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	26	263	1	ENST00000398015.3:c.238C>T	p.Arg80Trp	p.R80W	ENST00000398015	NM_004441.4	80	Cgg/Tgg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259173	89259173	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	47	288	0	ENST00000336596.2:c.317G>T	p.Cys106Phe	p.C106F	ENST00000336596	NM_005233.5	106	tGc/tTc																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149238690	149238690	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765794546		P-0017249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	73	456	0	ENST00000360632.3:c.1105G>A	p.Val369Ile	p.V369I	ENST00000360632	NM_015472.4	369	Gtt/Att																																																																															
APC	324	MSKCC	GRCh37	5	112175640	112175640	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	87	298	0	ENST00000257430.4:c.4349del	p.Arg1450GlnfsTer23	p.R1450Qfs*23	ENST00000257430	NM_000038.5	1450	cGa/ca																																																																															
MDC1	9656	MSKCC	GRCh37	6	30682862	30682862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	167	411	0	ENST00000376406.3:c.91G>A	p.Val31Ile	p.V31I	ENST00000376406	NM_014641.2	31	Gta/Ata																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32172054	32172054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	52	390	0	ENST00000375023.3:c.2978C>T	p.Ala993Val	p.A993V	ENST00000375023	NM_004557.3	993	gCc/gTc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066683	94066683	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	82	363	0	ENST00000369303.4:c.1076del	p.Gly359GlufsTer5	p.G359Efs*5	ENST00000369303	NM_004440.3	359	gGa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	226	607	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108206609	108206609	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	139	444	0	ENST00000278616.4:c.8189A>C	p.Gln2730Pro	p.Q2730P	ENST00000278616	NM_000051.3	2730	cAg/cCg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244155	46244155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	56	325	0	ENST00000334344.6:c.2249G>A	p.Gly750Glu	p.G750E	ENST00000334344	NM_152641.2	750	gGg/gAg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245035	46245035	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	158	562	0	ENST00000334344.6:c.3129A>T	p.Gln1043His	p.Q1043H	ENST00000334344	NM_152641.2	1043	caA/caT																																																																															
POLE	5426	MSKCC	GRCh37	12	133226349	133226349	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	93	748	0	ENST00000320574.5:c.3709G>T	p.Glu1237Ter	p.E1237*	ENST00000320574	NM_006231.2	1237	Gag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42041983	42041983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	173	517	1	ENST00000219905.7:c.6178del	p.Gln2060LysfsTer42	p.Q2060Kfs*42	ENST00000219905	NM_001164273.1	2060	Caa/aa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942532	17942532	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	73	591	0	ENST00000458235.1:c.2756C>A	p.Ala919Glu	p.A919E	ENST00000458235	NM_000215.3	919	gCg/gAg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17951146	17951146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	101	496	1	ENST00000458235.1:c.1147G>T	p.Asp383Tyr	p.D383Y	ENST00000458235	NM_000215.3	383	Gac/Tac																																																																															
BARD1	580	MSKCC	GRCh37	2	215595153	215595154	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	46	476	1	ENST00000260947.4:c.1982_1983delinsAT	p.Arg661Asn	p.R661N	ENST00000260947	NM_000465.2	661	aGG/aAT																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902560	1902560	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	91	662	5	ENST00000382891.5:c.179G>T	p.Gly60Val	p.G60V	ENST00000382891	NM_133335.3	60	gGg/gTg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144597	55144597	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	57	442	0	ENST00000257290.5:c.2071G>C	p.Asp691His	p.D691H	ENST00000257290	NM_006206.4	691	Gat/Cat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187525028	187525028	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	86	494	0	ENST00000441802.2:c.10652T>A	p.Phe3551Tyr	p.F3551Y	ENST00000441802	NM_005245.3	3551	tTc/tAc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056173	26056173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	122	344	0	ENST00000343677.2:c.484G>T	p.Ala162Ser	p.A162S	ENST00000343677	NM_005319.3	162	Gcc/Tcc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117704560	117704560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	70	474	0	ENST00000368508.3:c.2416C>T	p.Leu806Phe	p.L806F	ENST00000368508	NM_002944.2	806	Ctc/Ttc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468033	50468033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	52	367	2	ENST00000331340.3:c.1268G>A	p.Arg423His	p.R423H	ENST00000331340	NM_006060.4	423	cGc/cAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140494107	140494107	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	57	606	0	ENST00000288602.6:c.1140+1G>A		p.X380_splice	ENST00000288602	NM_004333.4	380																																																																																
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	371	479	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
MGA	23269	MSKCC	GRCh37	15	42052636	42052636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	226	525	1	ENST00000219905.7:c.7307G>A	p.Arg2436His	p.R2436H	ENST00000219905	NM_001164273.1	2436	cGt/cAt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061163	38061175	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCGGCCCCCGG	CGCCGGCCCCCGG	-			P-0017257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	105	144	0	ENST00000250448.2:c.814_826del	p.Pro272AlafsTer45	p.P272Afs*45	ENST00000250448	NM_004496.3	272	CCGGGGGCCGGCGgc/gc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778017	3778017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1393	302	1040	1	ENST00000262367.5:c.7031G>A	p.Arg2344Gln	p.R2344Q	ENST00000262367	NM_004380.2	2344	cGg/cAg																																																																															
CDH1	999	MSKCC	GRCh37	16	68844172	68844172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	564	847	0	ENST00000261769.5:c.760G>T	p.Asp254Tyr	p.D254Y	ENST00000261769	NM_004360.3	254	Gat/Tat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832529	72832529	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	306	422	0	ENST00000268489.5:c.4052del	p.Pro1351GlnfsTer4	p.P1351Qfs*4	ENST00000268489	NM_006885.3	1351	cCa/ca																																																																															
XIAP	331	MSKCC	GRCh37	X	123020225	123020225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	213	790	0	ENST00000355640.3:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000355640		238	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	274	571	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111475	8111476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	135	588	1	ENST00000346208.3:c.962dupA	p.Thr322AspfsTer30	p.T322Dfs*30	ENST00000346208		321	cag/cAag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151917611	151917611	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	156	682	0	ENST00000262189.6:c.3709C>T	p.Arg1237Ter	p.R1237*	ENST00000262189	NM_170606.2	1237	Cga/Tga																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569881	95569881	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	66	315	0	ENST00000343455.3:c.3852del	p.Tyr1285ThrfsTer17	p.Y1285Tfs*17	ENST00000343455	NM_177438.2	1284	ggG/gg																																																																															
ATM	472	MSKCC	GRCh37	11	108214042	108214042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	116	333	0	ENST00000278616.4:c.8362C>T	p.His2788Tyr	p.H2788Y	ENST00000278616	NM_000051.3	2788	Cat/Tat																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212558	36212558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	287	778	0	ENST00000222270.7:c.2309C>T	p.Pro770Leu	p.P770L	ENST00000222270	NM_014727.1	770	cCt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0017263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	171	695	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154755	2154755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	106	724	3	ENST00000434045.2:c.466G>A	p.Val156Met	p.V156M	ENST00000434045	NM_001127598.1	156	Gtg/Atg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10244380	10244380	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0017263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	63	611	1	ENST00000340748.4:c.4817-3C>T		p.X1606_splice	ENST00000340748		1606																																																																																
APC	324	MSKCC	GRCh37	5	112173841	112173841	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	118	409	0	ENST00000257430.4:c.2551del	p.Ser851ValfsTer10	p.S851Vfs*10	ENST00000257430	NM_000038.5	850	agA/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	378	542	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138433374	138433374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	484	576	2	ENST00000289153.2:c.1238C>T	p.Thr413Met	p.T413M	ENST00000289153	NM_006219.2	413	aCg/aTg																																																																															
KIT	3815	MSKCC	GRCh37	4	55573397	55573397	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	123	513	0	ENST00000288135.5:c.1059A>T	p.Arg353Ser	p.R353S	ENST00000288135	NM_000222.2	353	agA/agT																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0017273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	20	388	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0017273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	67	501	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	44	397	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	373	511	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221822	55221822	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149840192		P-0017284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	483	545	2	ENST00000275493.2:c.866C>T	p.Ala289Val	p.A289V	ENST00000275493	NM_005228.3	289	gCc/gTc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11210251	11210251	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	91	478	0	ENST00000361445.4:c.4502G>A	p.Trp1501Ter	p.W1501*	ENST00000361445	NM_004958.3	1501	tGg/tAg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741658	17741658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	60	347	0	ENST00000250003.3:c.329G>A	p.Arg110His	p.R110H	ENST00000250003	NM_002478.4	110	cGc/cAc																																																																															
RB1	5925	MSKCC	GRCh37	13	49030426	49030426	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	53	528	0	ENST00000267163.4:c.1901C>A	p.Ser634Ter	p.S634*	ENST00000267163	NM_000321.2	634	tCa/tAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821207	72821227	+	inframe_deletion	In_Frame_Del	DEL	TGGCATCGAGGGCTGAACCCC	TGGCATCGAGGGCTGAACCCC	-			P-0017287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	282	438	1	ENST00000268489.5:c.10948_10968del	p.Gly3650_Pro3656del	p.G3650_P3656del	ENST00000268489	NM_006885.3	3650	GGGGTTCAGCCCTCGATGCCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7572954	7572954	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	280	426	0	ENST00000269305.4:c.1155del	p.Phe385LeufsTer37	p.F385Lfs*37	ENST00000269305	NM_001126112.2	385	ttC/tt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	891	532	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574002	7574002	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	353	648	0	ENST00000269305.4:c.1025delG	p.Arg342GlnfsTer3	p.R342Qfs*3	ENST00000269305	NM_001126112.2	342	cGa/ca																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933574	39933574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	94	410	0	ENST00000378444.4:c.1025G>A	p.Arg342Gln	p.R342Q	ENST00000378444	NM_001123385.1	342	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0017298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	211	459	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29005423	29005423	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	105	361	0	ENST00000282397.4:c.838C>T	p.Arg280Ter	p.R280*	ENST00000282397	NM_002019.4	280	Cga/Tga																																																																															
INPP4B	8821	MSKCC	GRCh37	4	142950049	142950049	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	114	429	0	ENST00000262992.4:c.2661G>T	p.Glu887Asp	p.E887D	ENST00000262992	NM_001101669.1	887	gaG/gaT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	228	382	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1402	262	617	1	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604787	48604787	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	58	381	0	ENST00000342988.3:c.1609G>C	p.Asp537His	p.D537H	ENST00000342988	NM_005359.5	537	Gac/Cac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880255	37880255	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	240	519	0	ENST00000269571.5:c.2299A>T	p.Ile767Phe	p.I767F	ENST00000269571		767	Atc/Ttc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911550	134911550	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	177	422	1	ENST00000398015.3:c.2015T>A	p.Met672Lys	p.M672K	ENST00000398015	NM_004441.4	672	aTg/aAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151864336	151864336	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	146	425	0	ENST00000262189.6:c.9645del	p.Lys3215AsnfsTer34	p.K3215Nfs*34	ENST00000262189	NM_170606.2	3215	aaA/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0017308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	297	457	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450300	50450300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	148	408	0	ENST00000331340.3:c.484C>T	p.Arg162Trp	p.R162W	ENST00000331340	NM_006060.4	162	Cgg/Tgg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9783245	9783245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	261	553	0	ENST00000377346.4:c.2489G>A	p.Arg830His	p.R830H	ENST00000377346	NM_005026.3	830	cGt/cAt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2213950	2213950	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	92	528	0	ENST00000326181.6:c.29A>T	p.Asn10Ile	p.N10I	ENST00000326181	NM_032271.2	10	aAc/aTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29556250	29556250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	84	308	1	ENST00000358273.4:c.2617C>T	p.Arg873Cys	p.R873C	ENST00000358273	NM_001042492.2	873	Cgt/Tgt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156541	55156541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	193	460	1	ENST00000257290.5:c.2942G>A	p.Arg981His	p.R981H	ENST00000257290	NM_006206.4	981	cGt/cAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295425	1295425	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0017308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	44	52	1				ENST00000310581	NM_198253.2																																																																																	
APC	324	MSKCC	GRCh37	5	112137018	112137018	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	177	488	0	ENST00000257430.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000257430	NM_000038.5	258	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175581	112175582	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGCCACCAAGCAG			P-0017308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	115	469	0	ENST00000257430.4:c.4292_4305dup	p.Ser1436CysfsTer42	p.S1436Cfs*42	ENST00000257430	NM_000038.5	1430	-/ATGCCACCAAGCAG																																																																															
TP53	7157	MSKCC	GRCh37	17	7573998	7573999	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0017311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	322	593	0	ENST00000269305.4:c.1028_1029delAG	p.Glu343AlafsTer3	p.E343Afs*3	ENST00000269305	NM_001126112.2	343	gAG/g																																																																															
BRCA1	672	MSKCC	GRCh37	17	41201213	41201213	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0017311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	483	541	1	ENST00000357654.3:c.5333-2A>G		p.X1778_splice	ENST00000357654	NM_007294.3	1778																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120462032	120462032	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201996575		P-0017312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	143	321	1	ENST00000256646.2:c.5684G>A	p.Arg1895His	p.R1895H	ENST00000256646	NM_024408.3	1895	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	182	506	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0017315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	287	525	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0017315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	119	421	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739911	41739911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	379	334	0	ENST00000242208.4:c.62C>T	p.Ser21Phe	p.S21F	ENST00000242208	NM_002192.2	21	tCc/tTc																																																																															
FH	2271	MSKCC	GRCh37	1	241665762	241665762	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	221	409	0	ENST00000366560.3:c.1217A>G	p.Asn406Ser	p.N406S	ENST00000366560	NM_000143.3	406	aAt/aGt																																																																															
STAT3	6774	MSKCC	GRCh37	17	40468891	40468891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	35	286	1	ENST00000264657.5:c.2173C>A	p.Pro725Thr	p.P725T	ENST00000264657	NM_139276.2	725	Ccg/Acg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0017316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	220	707	3	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
ABL1	25	MSKCC	GRCh37	9	133750269	133750269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	34	471	0	ENST00000318560.5:c.1100G>A	p.Arg367Gln	p.R367Q	ENST00000318560	NM_005157.4	367	cGa/cAa																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154243	2154243	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	236	457	0	ENST00000434045.2:c.685C>G	p.Pro229Ala	p.P229A	ENST00000434045	NM_001127598.1	229	Cca/Gca																																																																															
EP300	2033	MSKCC	GRCh37	22	41527392	41527392	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	186	518	2	ENST00000263253.7:c.1283C>T	p.Pro428Leu	p.P428L	ENST00000263253	NM_001429.3	428	cCa/cTa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117681543	117681559	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCCCTTAGATGTAAA	GGCCCCTTAGATGTAAA	-			P-0017316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	135	556	0	ENST00000368508.3:c.3391_3407del	p.Phe1131ArgfsTer5	p.F1131Rfs*5	ENST00000368508	NM_002944.2	1131	TTTACATCTAAGGGGCCa/a																																																																															
LATS1	9113	MSKCC	GRCh37	6	150016264	150016264	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	159	505	0	ENST00000253339.5:c.442C>G	p.Arg148Gly	p.R148G	ENST00000253339		148	Cga/Gga																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134744	41134744	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	278	282	0	ENST00000379561.5:c.884G>A	p.Trp295Ter	p.W295*	ENST00000379561	NM_002015.3	295	tGg/tAg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914168	32914404	+	inframe_deletion	In_Frame_Del	DEL	TTGTTACGAGGCATTGGATGATTCAGAGGATATTCTTCATAACTCTCTAGATAATGATGAATGTAGCACGCATTCACATAAGGTTTTTGCTGACATTCAGAGTGAAGAAATTTTACAACATAACCAAAATATGTCTGGATTGGAGAAAGTTTCTAAAATATCACCTTGTGATGTTAGTTTGGAAACTTCAGATATATGTAAATGTAGTATAGGGAAGCTTCATAAGTCAGTCTCATC	TTGTTACGAGGCATTGGATGATTCAGAGGATATTCTTCATAACTCTCTAGATAATGATGAATGTAGCACGCATTCACATAAGGTTTTTGCTGACATTCAGAGTGAAGAAATTTTACAACATAACCAAAATATGTCTGGATTGGAGAAAGTTTCTAAAATATCACCTTGTGATGTTAGTTTGGAAACTTCAGATATATGTAAATGTAGTATAGGGAAGCTTCATAAGTCAGTCTCATC	-			P-0017317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	449	512	0	ENST00000380152.3:c.5677_5913del	p.Cys1893_Ser1971del	p.C1893_S1971del	ENST00000380152		1892	ggTTGTTACGAGGCATTGGATGATTCAGAGGATATTCTTCATAACTCTCTAGATAATGATGAATGTAGCACGCATTCACATAAGGTTTTTGCTGACATTCAGAGTGAAGAAATTTTACAACATAACCAAAATATGTCTGGATTGGAGAAAGTTTCTAAAATATCACCTTGTGATGTTAGTTTGGAAACTTCAGATATATGTAAATGTAGTATAGGGAAGCTTCATAAGTCAGTCTCATCt/ggt																																																																															
CDH1	999	MSKCC	GRCh37	16	68849335	68849631	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGCAACAGTTAAGGATTTAATTTTATTTTTACTAACACAAAATGTTTCGTTTTGTTTTTAACTTCATTGTTTCTGCTCTCTAGGGCTTGGATTTTGAGGCCAAGCAGCAGTACATTCTACACGTAGCAGTGACGAATGTGGTACCTTTTGAGGTCTCTCTCACCACCTCCACAGCCACCGTCACCGTGGATGTGCTGGATGTGAATGAAGCCCCCATCTTTGTGCCTCCTGAAAAGAGAGTGGAAGTGTCCGAGGACTTTGGCGTGGGCCAGGAAATCACATCCTACACTGCCCAGG	AGCAACAGTTAAGGATTTAATTTTATTTTTACTAACACAAAATGTTTCGTTTTGTTTTTAACTTCATTGTTTCTGCTCTCTAGGGCTTGGATTTTGAGGCCAAGCAGCAGTACATTCTACACGTAGCAGTGACGAATGTGGTACCTTTTGAGGTCTCTCTCACCACCTCCACAGCCACCGTCACCGTGGATGTGCTGGATGTGAATGAAGCCCCCATCTTTGTGCCTCCTGAAAAGAGAGTGGAAGTGTCCGAGGACTTTGGCGTGGGCCAGGAAATCACATCCTACACTGCCCAGG	-			P-0017317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	67	82	0	ENST00000261769.5:c.1321-80_1537del		p.X441_splice	ENST00000261769	NM_004360.3	441																																																																																
RICTOR	253260	MSKCC	GRCh37	5	38960511	38960511	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	279	261	0	ENST00000357387.3:c.1840G>C	p.Glu614Gln	p.E614Q	ENST00000357387	NM_152756.3	614	Gaa/Caa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523519	106523519	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	369	336	0	ENST00000359195.3:c.2671A>T	p.Ile891Phe	p.I891F	ENST00000359195	NM_002649.2	891	Att/Ttt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152027794	152027794	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	533	514	0	ENST00000262189.6:c.281C>G	p.Ala94Gly	p.A94G	ENST00000262189	NM_170606.2	94	gCt/gGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0017319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	173	374	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	288	423	1	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0017319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	180	291	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577521	7577521	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	229	380	1	ENST00000269305.4:c.760A>T	p.Ile254Phe	p.I254F	ENST00000269305	NM_001126112.2	254	Atc/Ttc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46242742	46242742	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0017319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	61	304	0	ENST00000334344.6:c.1704T>A	p.Tyr568Ter	p.Y568*	ENST00000334344	NM_152641.2	568	taT/taA																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56772349	56772349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	100	385	0	ENST00000337432.4:c.203G>T	p.Cys68Phe	p.C68F	ENST00000337432	NM_058216.2	68	tGt/tTt																																																																															
CBFB	865	MSKCC	GRCh37	16	67063636	67063641	+	frameshift_variant	Frame_Shift_Del	DEL	TACACG	TACACG	GGACC			P-0017320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	65	383	1	ENST00000412916.2:c.85_90delinsGGACC	p.Tyr29GlyfsTer60	p.Y29Gfs*60	ENST00000412916		29	TACACG/GGACC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	101	630	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579368	7579368	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1140	131	659	0	ENST00000269305.4:c.319T>G	p.Tyr107Asp	p.Y107D	ENST00000269305	NM_001126112.2	107	Tac/Gac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1092	32	559	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
LYN	4067	MSKCC	GRCh37	8	56879441	56879441	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	72	499	0	ENST00000519728.1:c.958G>T	p.Glu320Ter	p.E320*	ENST00000519728	NM_002350.3	320	Gag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	238	451	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16235971	16235971	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	78	379	0	ENST00000375759.3:c.1037C>G	p.Ser346Cys	p.S346C	ENST00000375759	NM_015001.2	346	tCt/tGt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180538	94180538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	185	361	1	ENST00000323929.3:c.1630G>A	p.Asp544Asn	p.D544N	ENST00000323929	NM_005591.3	544	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398286	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0017324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	321	524	1	ENST00000256078.4:c.33_34delinsCT	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	11	gcTGgt/gcCTgt																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599120	28599120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	197	634	0	ENST00000253063.3:c.566G>T	p.Trp189Leu	p.W189L	ENST00000253063	NM_031459.4	189	tGg/tTg																																																																															
IGF1	3479	MSKCC	GRCh37	12	102869514	102869514	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	133	435	0	ENST00000307046.8:c.127A>T	p.Thr43Ser	p.T43S	ENST00000307046	NM_001111285.1	43	Acc/Tcc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47144880	47144880	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	378	466	0	ENST00000409792.3:c.4873C>A	p.Arg1625Ser	p.R1625S	ENST00000409792	NM_014159.6	1625	Cgt/Agt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151856060	151856060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	83	475	0	ENST00000262189.6:c.11558G>T	p.Arg3853Leu	p.R3853L	ENST00000262189	NM_170606.2	3853	cGg/cTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465657	8465657	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	118	385	0	ENST00000356435.5:c.3523A>G	p.Arg1175Gly	p.R1175G	ENST00000356435		1175	Agg/Ggg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139418184	139418184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	225	524	0	ENST00000277541.6:c.388C>T	p.Pro130Ser	p.P130S	ENST00000277541	NM_017617.3	130	Ccg/Tcg																																																																															
MED12	9968	MSKCC	GRCh37	X	70348172	70348172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	193	464	0	ENST00000374080.3:c.3236C>A	p.Ala1079Glu	p.A1079E	ENST00000374080		1079	gCa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	613	490	1	ENST00000269305.4:c.746G>A	p.Arg249Lys	p.R249K	ENST00000269305	NM_001126112.2	249	aGg/aAg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495686	56495686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	416	435	0	ENST00000267101.3:c.3876G>A	p.Met1292Ile	p.M1292I	ENST00000267101	NM_001982.3	1292	atG/atA																																																																															
KDR	3791	MSKCC	GRCh37	4	55970831	55970831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	248	458	0	ENST00000263923.4:c.1966G>T	p.Val656Phe	p.V656F	ENST00000263923	NM_002253.2	656	Gtc/Ttc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0017326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	287	599	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032594	47032594	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0017326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	35	527	0	ENST00000329236.7:c.269del	p.Ser90Ter	p.S90*	ENST00000329236	NM_001204466.1	90	tCa/ta																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0017328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1184	238	579	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat																																																																															
ATM	472	MSKCC	GRCh37	11	108199963	108199963	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0017328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	41	353	0	ENST00000278616.4:c.7305C>A	p.Asn2435Lys	p.N2435K	ENST00000278616	NM_000051.3	2435	aaC/aaA																																																																															
SPOP	8405	MSKCC	GRCh37	17	47685280	47685280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	164	587	0	ENST00000347630.2:c.670G>A	p.Val224Ile	p.V224I	ENST00000347630	NM_001007230.1	224	Gtt/Att																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	156	318	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1370	423	636	1	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602767	10602767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1389	296	571	1	ENST00000171111.5:c.811G>A	p.Val271Met	p.V271M	ENST00000171111	NM_203500.1	271	Gtg/Atg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs149680468		P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1340	129	466	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233120	46233120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	92	193	0	ENST00000334344.6:c.1339G>T	p.Val447Leu	p.V447L	ENST00000334344	NM_152641.2	447	Gtg/Ttg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432753	49432753	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	169	388	3	ENST00000301067.7:c.8386C>T	p.Gln2796Ter	p.Q2796*	ENST00000301067	NM_003482.3	2796	Caa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444978	49444978	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	117	256	0	ENST00000301067.7:c.2488G>T	p.Glu830Ter	p.E830*	ENST00000301067	NM_003482.3	830	Gaa/Taa																																																																															
MSI1	4440	MSKCC	GRCh37	12	120785281	120785281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	189	408	0	ENST00000257552.2:c.827C>T	p.Ala276Val	p.A276V	ENST00000257552	NM_002442.3	276	gCa/gTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29422373	29422373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1314	400	462	1	ENST00000358273.4:c.46C>T	p.Arg16Cys	p.R16C	ENST00000358273	NM_001042492.2	16	Cgc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288413	15288413	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	195	364	0	ENST00000263388.2:c.4326C>A	p.Cys1442Ter	p.C1442*	ENST00000263388	NM_000435.2	1442	tgC/tgA																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223748	36223748	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1729	246	589	0	ENST00000222270.7:c.6298G>C	p.Gly2100Arg	p.G2100R	ENST00000222270	NM_014727.1	2100	Ggg/Cgg																																																																															
ALK	238	MSKCC	GRCh37	2	29443618	29443618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1316	236	443	1	ENST00000389048.3:c.3599C>A	p.Ala1200Glu	p.A1200E	ENST00000389048	NM_004304.4	1200	gCg/gAg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165861	47165861	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	156	369	0	ENST00000409792.3:c.265C>G	p.Leu89Val	p.L89V	ENST00000409792	NM_014159.6	89	Ctc/Gtc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127387	55127387	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1401	96	530	0	ENST00000257290.5:c.175T>A	p.Tyr59Asn	p.Y59N	ENST00000257290	NM_006206.4	59	Tac/Aac																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38966750	38966750	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	131	343	0	ENST00000357387.3:c.1292T>C	p.Leu431Ser	p.L431S	ENST00000357387	NM_152756.3	431	tTa/tCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0017331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	332	603	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955145	17955145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	299	577	0	ENST00000458235.1:c.82G>A	p.Val28Met	p.V28M	ENST00000458235	NM_000215.3	28	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	276	632	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ATM	472	MSKCC	GRCh37	11	108121594	108121595	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0017333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	271	578	0	ENST00000278616.4:c.1402_1403delAA	p.Lys468GlufsTer18	p.K468Efs*18	ENST00000278616	NM_000051.3	468	AAg/g																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125507402	125507403	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	280	631	1	ENST00000428830.2:c.783dup	p.Asp262ArgfsTer2	p.D262Rfs*2	ENST00000428830	NM_001114121.2	259	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7578181	7578192	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCTCATAG	GGCGGCTCATAG	-			P-0017333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	188	616	0	ENST00000269305.4:c.657_668del	p.Tyr220_Pro223del	p.Y220_P223del	ENST00000269305	NM_001126112.2	219	ccCTATGAGCCGCCt/cct																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974697	21974698	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0017333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	186	368	0	ENST00000304494.5:c.129_130del	p.Ser43ArgfsTer76	p.S43Rfs*76	ENST00000304494	NM_000077.4	43	agTTac/agac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44911048	44911048	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0017333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	240	257	0	ENST00000377967.4:c.748+1G>C		p.X250_splice	ENST00000377967	NM_021140.2	250																																																																																
MEN1	4221	MSKCC	GRCh37	11	64572549	64572549	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	429	558	0	ENST00000337652.1:c.1322G>T	p.Trp441Leu	p.W441L	ENST00000337652	NM_130803.2	441	tGg/tTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2125942	2126472	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCCTTGCGGCAGAAAGCCCCGGCAGCCTTTGTCCCCAAGGCCTGAGCGCCTCGGTTTTTTGCACTTCATGCCCTGGGGATGTTTCCCTGCTGCCAGGATGGAGTGCCAGCCCCCTTCTCATCTCAGGTTTAATCAGTACATCGTGTGTCTGGCCCATCACGTCATAGCCATGTGGTTCATCAGGTGCCGCCTGCCCTTCCGGAAGGATTTTGTCCCTTTCATCACTAAGGTGGGCTCAGGGCCGGTGAAGGCTGTGTCTCTCGGTAGGCCAGGGCTTGCTTTGCCCTTGGCTGTCCATGGTCGGGCAGAGTGACAGGCAGGTGGAGGGCAGTGGGAGGGTGTTTGGGGCTGTGCCTGTGGCGCTGGGGGCTCTGCTGGGCAGCCTGCAGGGCTTTGATGCGCGGCAGGCATTGAGGGGTGGGAGCTGGGTGCCGCCGCCTTGCCCCTAGCCTGCAGCTTGTCCCTGGCCAGGGGGCACCCGGCAGGCCTGGTGAGGGCCTCCAGCCCCCATTGCCACCCCTCACTGTCTG	GGCCTTGCGGCAGAAAGCCCCGGCAGCCTTTGTCCCCAAGGCCTGAGCGCCTCGGTTTTTTGCACTTCATGCCCTGGGGATGTTTCCCTGCTGCCAGGATGGAGTGCCAGCCCCCTTCTCATCTCAGGTTTAATCAGTACATCGTGTGTCTGGCCCATCACGTCATAGCCATGTGGTTCATCAGGTGCCGCCTGCCCTTCCGGAAGGATTTTGTCCCTTTCATCACTAAGGTGGGCTCAGGGCCGGTGAAGGCTGTGTCTCTCGGTAGGCCAGGGCTTGCTTTGCCCTTGGCTGTCCATGGTCGGGCAGAGTGACAGGCAGGTGGAGGGCAGTGGGAGGGTGTTTGGGGCTGTGCCTGTGGCGCTGGGGGCTCTGCTGGGCAGCCTGCAGGGCTTTGATGCGCGGCAGGCATTGAGGGGTGGGAGCTGGGTGCCGCCGCCTTGCCCCTAGCCTGCAGCTTGTCCCTGGCCAGGGGGCACCCGGCAGGCCTGGTGAGGGCCTCCAGCCCCCATTGCCACCCCTCACTGTCTG	-			P-0017348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	543	367	0	ENST00000219476.3:c.2639+51_2743-18del		p.X880_splice	ENST00000219476	NM_000548.3	880																																																																																
ATRX	546	MSKCC	GRCh37	X	76855029	76855029	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	166	526	1	ENST00000373344.5:c.5807del	p.Lys1936ArgfsTer19	p.K1936Rfs*19	ENST00000373344	NM_000489.3	1936	aAg/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0017349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	770	452	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0017349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	312	442	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
NF2	4771	MSKCC	GRCh37	22	30032739	30032739	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0017349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	265	176	0	ENST00000338641.4:c.115-1G>C		p.X39_splice	ENST00000338641	NM_000268.3	39																																																																																
TP53	7157	MSKCC	GRCh37	17	7577537	7577546	+	frameshift_variant	Frame_Shift_Del	DEL	CCGGTTCATG	CCGGTTCATG	-			P-0017349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	272	417	0	ENST00000269305.4:c.735_744del	p.Met246GlyfsTer96	p.M246Gfs*96	ENST00000269305	NM_001126112.2	245	ggCATGAACCGG/gg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575102	48575102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	233	332	0	ENST00000342988.3:c.296G>A	p.Trp99Ter	p.W99*	ENST00000342988	NM_005359.5	99	tGg/tAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244107	5244107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	457	475	0	ENST00000357368.4:c.1375G>A	p.Gly459Ser	p.G459S	ENST00000357368	NM_002850.3	459	Ggc/Agc																																																																															
EP300	2033	MSKCC	GRCh37	22	41574081	41574081	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	479	416	0	ENST00000263253.7:c.6370del	p.Val2124SerfsTer10	p.V2124Sfs*10	ENST00000263253	NM_001429.3	2122	caG/ca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541964	187541964	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0017349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	205	330	0	ENST00000441802.2:c.5776A>T	p.Lys1926Ter	p.K1926*	ENST00000441802	NM_005245.3	1926	Aag/Tag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32172139	32172153	+	inframe_deletion	In_Frame_Del	DEL	AGTTCTGTCCATCGT	AGTTCTGTCCATCGT	-			P-0017349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	375	487	0	ENST00000375023.3:c.2879_2893del	p.Tyr960_Asn964del	p.Y960_N964del	ENST00000375023	NM_004557.3	960	tACGATGGACAGAACTgc/tgc																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913500		P-0017352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	19	279	0	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	60	497	1	ENST00000337652.1:c.1561dupC	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115915	8115915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	290	424	0	ENST00000346208.3:c.1262del	p.Pro421ArgfsTer54	p.P421Rfs*54	ENST00000346208		421	Ccg/cg																																																																															
TP63	8626	MSKCC	GRCh37	3	189608650	189608650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	68	537	0	ENST00000264731.3:c.1725G>T	p.Gln575His	p.Q575H	ENST00000264731	NM_003722.4	575	caG/caT																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	542	514	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	44	592	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	16	426	0	ENST00000371085.3:c.601C>A	p.Arg201Ser	p.R201S	ENST00000371085	NM_000516.4	201	Cgt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	38	756	1	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436621	110436621	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	42	748	0	ENST00000375856.3:c.1780T>G	p.Ser594Ala	p.S594A	ENST00000375856	NM_003749.2	594	Tcg/Gcg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	192	473	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0017359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	156	349	1	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
CBFB	865	MSKCC	GRCh37	16	67063656	67063673	+	inframe_deletion	In_Frame_Del	DEL	GCCCCACGAGGAACGCCA	GCCCCACGAGGAACGCCA	-			P-0017359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	169	501	0	ENST00000412916.2:c.106_123del	p.Pro36_Gln41del	p.P36_Q41del	ENST00000412916		35	cgGCCCCACGAGGAACGCCAg/cgg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115919	8115920	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	114	384	0	ENST00000346208.3:c.1266dup	p.His423AlafsTer84	p.H423Afs*84	ENST00000346208		422	atg/atGg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0017366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	77	625	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438203	49438203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	48	740	3	ENST00000301067.7:c.5066G>A	p.Arg1689His	p.R1689H	ENST00000301067	NM_003482.3	1689	cGt/cAt																																																																															
MET	4233	MSKCC	GRCh37	7	116397581	116397647	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTCTCCTATGTGGTAAGGAAGATTCTATCCTATCATGTTTGATTTTTACTTAATCTATTTAAATTA	ATTCTCCTATGTGGTAAGGAAGATTCTATCCTATCATGTTTGATTTTTACTTAATCTATTTAAATTA	-			P-0017366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	71	735	0	ENST00000397752.3:c.1953_1966-45del		p.X651_splice	ENST00000397752	NM_000245.2	651																																																																																
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0017367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	43	689	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750600586		P-0017368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	904	823	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29557286	29557286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	120	338	0	ENST00000358273.4:c.2999G>A	p.Arg1000His	p.R1000H	ENST00000358273	NM_001042492.2	1000	cGt/cAt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115268918	115269150	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTCTTGGAGTTAGAATTACGACCTAAAAGTCGCACACAAGTTGCAACCTGCTGTCCAGGCCTCTGTTTGTCACTAATACTAAATTCAACCTGTGAAAATTAAGGATGCTCATTAACACCATATCACTTCCACACCAATCTCCTTAACTCAGAAAACAAGACCTATAACTCCCCCAGCGCATGCTTTTCATTCCAAATATCCTTTGTTATTACTTCAATGAAATTGATTTTCA	CCTCTTGGAGTTAGAATTACGACCTAAAAGTCGCACACAAGTTGCAACCTGCTGTCCAGGCCTCTGTTTGTCACTAATACTAAATTCAACCTGTGAAAATTAAGGATGCTCATTAACACCATATCACTTCCACACCAATCTCCTTAACTCAGAAAACAAGACCTATAACTCCCCCAGCGCATGCTTTTCATTCCAAATATCCTTTGTTATTACTTCAATGAAATTGATTTTCA	-			P-0017368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1187	120	611	0	ENST00000438362.2:c.1603-143_1692del		p.X535_splice	ENST00000438362	NM_001242891.1	535																																																																																
ATM	472	MSKCC	GRCh37	11	108124644	108124644	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	292	501	1	ENST00000278616.4:c.2002G>C	p.Glu668Gln	p.E668Q	ENST00000278616	NM_000051.3	668	Gaa/Caa																																																																															
RB1	5925	MSKCC	GRCh37	13	49030345	49030345	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	321	341	0	ENST00000267163.4:c.1822del	p.Ser608LeufsTer3	p.S608Lfs*3	ENST00000267163	NM_000321.2	607	cTt/ct																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81965113	81965113	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	203	496	0	ENST00000359376.3:c.2593C>G	p.Gln865Glu	p.Q865E	ENST00000359376	NM_002661.3	865	Cag/Gag																																																																															
RUNX1	861	MSKCC	GRCh37	21	36253004	36253004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1286	245	475	1	ENST00000300305.3:c.358G>A	p.Ala120Thr	p.A120T	ENST00000300305		120	Gcc/Acc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440861	52440861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	247	504	0	ENST00000460680.1:c.643G>A	p.Gly215Ser	p.G215S	ENST00000460680	NM_004656.3	215	Ggc/Agc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413679	138414013	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAGTTGAAATCCAGAAGCTCTAGGGCCTCCCGGGGGGGCAGTTTAGGCCAAATCTGAAGCAGCGCCTGAAGCTGTTTAAAAAATGAAACTGGTTCAGAAATAATGGGGGACAAAAGTAATCTAATTTTCCTTGACACACAGGAGCACCAAGATAGGTCAAAAGAAGGCAAAGCTCACTTTTAATTATTGATGCCTCAAAAATCCATTCCTGTTAATAGAGACTAATAAAGATTGTCTTTGTTGTTGAAACATTCTATAGATTAAGTCTGAAAAGCTATGAAGTACTTACCCCCAAATAAATTTTATGGGTGAGAGAGAAAAAAATGTTGAATTTG	TAGTTGAAATCCAGAAGCTCTAGGGCCTCCCGGGGGGGCAGTTTAGGCCAAATCTGAAGCAGCGCCTGAAGCTGTTTAAAAAATGAAACTGGTTCAGAAATAATGGGGGACAAAAGTAATCTAATTTTCCTTGACACACAGGAGCACCAAGATAGGTCAAAAGAAGGCAAAGCTCACTTTTAATTATTGATGCCTCAAAAATCCATTCCTGTTAATAGAGACTAATAAAGATTGTCTTTGTTGTTGAAACATTCTATAGATTAAGTCTGAAAAGCTATGAAGTACTTACCCCCAAATAAATTTTATGGGTGAGAGAGAAAAAAATGTTGAATTTG	-			P-0017368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1253	141	436	0	ENST00000289153.2:c.1771-264_1841del		p.X591_splice	ENST00000289153	NM_006219.2	591																																																																																
BCL6	604	MSKCC	GRCh37	3	187449570	187449570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	168	347	0	ENST00000232014.4:c.310G>T	p.Ala104Ser	p.A104S	ENST00000232014	NM_001130845.1	104	Gct/Tct																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31449495	31449495	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	201	335	0	ENST00000344624.3:c.2714A>G	p.Asn905Ser	p.N905S	ENST00000344624		905	aAt/aGt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39911410	39911411	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0017368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	252	512	0	ENST00000378444.4:c.5219_5220del	p.Ser1740CysfsTer8	p.S1740Cfs*8	ENST00000378444	NM_001123385.1	1740	tCT/t																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	30	386	1				ENST00000310581	NM_198253.2																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178947852	178947852	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	99	361	0	ENST00000263967.3:c.2727C>G	p.Phe909Leu	p.F909L	ENST00000263967	NM_006218.2	909	ttC/ttG																																																																															
ARID2	196528	MSKCC	GRCh37	12	46242729	46242729	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	42	487	0	ENST00000334344.6:c.1691del	p.Ser564Ter	p.S564*	ENST00000334344	NM_152641.2	564	tCa/ta																																																																															
TET1	80312	MSKCC	GRCh37	10	70404926	70404926	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	63	611	0	ENST00000373644.4:c.2440G>T	p.Asp814Tyr	p.D814Y	ENST00000373644	NM_030625.2	814	Gat/Tat																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118359363	118359363	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	36	354	1	ENST00000534358.1:c.4367A>T	p.His1456Leu	p.H1456L	ENST00000534358	NM_005933.3	1456	cAc/cTc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127446	55127446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	79	730	0	ENST00000257290.5:c.234C>A	p.Ser78Arg	p.S78R	ENST00000257290	NM_006206.4	78	agC/agA																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675447	30675447	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	58	481	0	ENST00000376406.3:c.2909G>C	p.Gly970Ala	p.G970A	ENST00000376406	NM_014641.2	970	gGg/gCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0017375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	654	591	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943632	9943632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	296	482	0	ENST00000330684.3:c.1309C>T	p.Arg437Trp	p.R437W	ENST00000330684	NM_001134407.1	437	Cgg/Tgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29677279	29677279	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	505	470	0	ENST00000358273.4:c.7400del	p.Ser2467Ter	p.S2467*	ENST00000358273	NM_001042492.2	2467	tCa/ta																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302291	15302291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1381	180	710	0	ENST00000263388.2:c.980C>T	p.Ala327Val	p.A327V	ENST00000263388	NM_000435.2	327	gCc/gTc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0017376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	111	489	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578491	7578491	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	366	875	1	ENST00000269305.4:c.439delG	p.Val147LeufsTer23	p.V147Lfs*23	ENST00000269305	NM_001126112.2	147	Gtt/tt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032526	12032526	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	157	388	0	ENST00000353533.5:c.962T>G	p.Val321Gly	p.V321G	ENST00000353533	NM_003010.3	321	gTg/gGg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78865440	78865547	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGTGACTCAAGTCTCACTGCTGCTCCACAATCATTTTCCAGCCCCAGTGACTGTTATTGTCCCTTCTCCCTCTCGGCAGGAGCTGGTGGTGGCTCTGAGTCATCTTG	TGGTGACTCAAGTCTCACTGCTGCTCCACAATCATTTTCCAGCCCCAGTGACTGTTATTGTCCCTTCTCCCTCTCGGCAGGAGCTGGTGGTGGCTCTGAGTCATCTTG	-			P-0017376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	24	131	0	ENST00000306801.3:c.1984-76_2015del		p.X662_splice	ENST00000306801	NM_020761.2	662																																																																																
RPTOR	57521	MSKCC	GRCh37	17	78865567	78865567	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	215	687	0	ENST00000306801.3:c.2033del	p.Phe678SerfsTer9	p.F678Sfs*9	ENST00000306801	NM_020761.2	677	aaT/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175918	112175918	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	160	378	0	ENST00000257430.4:c.4629del	p.Glu1544AsnfsTer21	p.E1544Nfs*21	ENST00000257430	NM_000038.5	1543	Aaa/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	168	572	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
AR	367	MSKCC	GRCh37	X	66766501	66766501	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	90	674	0	ENST00000374690.3:c.1513C>G	p.Pro505Ala	p.P505A	ENST00000374690	NM_000044.3	505	Cct/Gct																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838403	156838403	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	168	568	1	ENST00000524377.1:c.681G>T	p.Trp227Cys	p.W227C	ENST00000524377	NM_002529.3	227	tgG/tgT																																																																															
PGR	5241	MSKCC	GRCh37	11	100999186	100999186	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	57	555	0	ENST00000325455.5:c.616T>A	p.Ser206Thr	p.S206T	ENST00000325455	NM_001202474.3	206	Tcc/Acc																																																																															
ATM	472	MSKCC	GRCh37	11	108163473	108163473	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	57	534	0	ENST00000278616.4:c.4564G>C	p.Gly1522Arg	p.G1522R	ENST00000278616	NM_000051.3	1522	Ggt/Cgt																																																																															
ATM	472	MSKCC	GRCh37	11	108181043	108181043	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	28	232	0	ENST00000278616.4:c.5918+1G>T		p.X1973_splice	ENST00000278616	NM_000051.3	1973																																																																																
PIK3C2G	5288	MSKCC	GRCh37	12	18435145	18435145	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201124495		P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	151	435	1	ENST00000266497.5:c.130G>A	p.Val44Ile	p.V44I	ENST00000266497		44	Gta/Ata																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444936	49444937	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	82	378	1	ENST00000301067.7:c.2529_2530delinsTT	p.Pro844Ser	p.P844S	ENST00000301067	NM_003482.3	843	tcCCcc/tcTTcc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467228	99467228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	35	299	0	ENST00000268035.6:c.2609G>T	p.Gly870Val	p.G870V	ENST00000268035	NM_000875.3	870	gGa/gTa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641037	3641037	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	56	902	0	ENST00000294008.3:c.2602G>C	p.Glu868Gln	p.E868Q	ENST00000294008	NM_032444.2	868	Gaa/Caa																																																																															
ALK	238	MSKCC	GRCh37	2	29519767	29519767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	105	514	0	ENST00000389048.3:c.1804G>T	p.Asp602Tyr	p.D602Y	ENST00000389048	NM_004304.4	602	Gat/Tat																																																																															
EP300	2033	MSKCC	GRCh37	22	41573968	41573968	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	38	588	0	ENST00000263253.7:c.6253A>T	p.Ile2085Phe	p.I2085F	ENST00000263253	NM_001429.3	2085	Atc/Ttc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390171	89390171	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	55	298	1	ENST00000336596.2:c.920A>T	p.Glu307Val	p.E307V	ENST00000336596	NM_005233.5	307	gAg/gTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670814	134670814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	26	310	0	ENST00000398015.3:c.725G>T	p.Gly242Val	p.G242V	ENST00000398015	NM_004441.4	242	gGg/gTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55984804	55984804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	79	588	0	ENST00000263923.4:c.325G>T	p.Asp109Tyr	p.D109Y	ENST00000263923	NM_002253.2	109	Gac/Tac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213923	66213923	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	56	400	0	ENST00000273854.3:c.2509-2A>T		p.X837_splice	ENST00000273854	NM_004439.5	837																																																																																
INHBA	3624	MSKCC	GRCh37	7	41729733	41729733	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	56	457	0	ENST00000242208.4:c.796G>C	p.Glu266Gln	p.E266Q	ENST00000242208	NM_002192.2	266	Gag/Cag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922045	39922045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	84	680	0	ENST00000378444.4:c.4127G>A	p.Gly1376Glu	p.G1376E	ENST00000378444	NM_001123385.1	1376	gGa/gAa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933273	39933273	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	80	702	0	ENST00000378444.4:c.1326del	p.Leu443CysfsTer8	p.L443Cfs*8	ENST00000378444	NM_001123385.1	442	gaC/ga																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040946	47040946	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	103	741	0	ENST00000329236.7:c.1242del	p.Met415CysfsTer211	p.M415Cfs*211	ENST00000329236	NM_001204466.1	414	tcG/tc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0017386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	1022	539	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577088	7577088	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	217	667	0	ENST00000269305.4:c.850A>C	p.Thr284Pro	p.T284P	ENST00000269305	NM_001126112.2	284	Aca/Cca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521327	8521327	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	161	330	0	ENST00000356435.5:c.911C>G	p.Ala304Gly	p.A304G	ENST00000356435		304	gCt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577555	7577555	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs375874539		P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	302	480	0	ENST00000269305.4:c.726C>G	p.Cys242Trp	p.C242W	ENST00000269305	NM_001126112.2	242	tgC/tgG																																																																															
ATM	472	MSKCC	GRCh37	11	108127026	108127026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	238	427	0	ENST00000278616.4:c.2209G>A	p.Glu737Lys	p.E737K	ENST00000278616	NM_000051.3	737	Gaa/Aaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs149680468		P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	322	536	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155880464	155880464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	367	481	0	ENST00000368323.3:c.89G>T	p.Gly30Val	p.G30V	ENST00000368323	NM_006912.5	30	gGt/gTt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28980027	28980027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	173	361	0	ENST00000282397.4:c.1441G>T	p.Asp481Tyr	p.D481Y	ENST00000282397	NM_002019.4	481	Gac/Tac																																																																															
MGA	23269	MSKCC	GRCh37	15	42003513	42003513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	144	494	0	ENST00000219905.7:c.3050C>T	p.Ala1017Val	p.A1017V	ENST00000219905	NM_001164273.1	1017	gCa/gTa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041614	14041614	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	195	365	0	ENST00000311895.7:c.2161G>T	p.Glu721Ter	p.E721*	ENST00000311895	NM_005236.2	721	Gaa/Taa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78882665	78882665	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	177	580	0	ENST00000306801.3:c.2456C>G	p.Ala819Gly	p.A819G	ENST00000306801	NM_020761.2	819	gCt/gGt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610085	10610085	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	414	644	0	ENST00000171111.5:c.625A>G	p.Met209Val	p.M209V	ENST00000171111	NM_203500.1	209	Atg/Gtg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098821	178099325	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTAACTGAGCGAAAAAGGCTTTCTCTTGCTCCTTTTGGAGTTGTTCTTGTCTTTCCTTTTCAAGTTTTTTCTGTTTTTCCAGCTCATACTCTTTCCGTCGCTGACTGAAGTCAAATACTTCTCGACTTACTCCAAGATCTATATCTTGCCTCCAAAGTATGTCAATCAAATCCATGTCCTATGTTTAAGACAAAAAAAGGAAGGAGAGAGCTCATGTTTTTTAAATGACAGATACCACATAAATTAATTCACATTATGCCACTGTTGATGGTGGGAAGTGGGGAGATTACAAATACAATCTAAATGAGAACACAGATCCAATGTTCTAGAAGAGCACAGTTAATTCCATTCAATGAATCTATTCATTAAAGACAACAAACAACCTACAAACACATAGCCATCCATTCTAATCACTTGGATCATTAATGATAGGGTGATGGTAGAGGTCACTAAAGGGCAAAGTCACAAATGGTTTGAATGAGAAGAAATCCCACCCTTGTTTAA	TGTAACTGAGCGAAAAAGGCTTTCTCTTGCTCCTTTTGGAGTTGTTCTTGTCTTTCCTTTTCAAGTTTTTTCTGTTTTTCCAGCTCATACTCTTTCCGTCGCTGACTGAAGTCAAATACTTCTCGACTTACTCCAAGATCTATATCTTGCCTCCAAAGTATGTCAATCAAATCCATGTCCTATGTTTAAGACAAAAAAAGGAAGGAGAGAGCTCATGTTTTTTAAATGACAGATACCACATAAATTAATTCACATTATGCCACTGTTGATGGTGGGAAGTGGGGAGATTACAAATACAATCTAAATGAGAACACAGATCCAATGTTCTAGAAGAGCACAGTTAATTCCATTCAATGAATCTATTCATTAAAGACAACAAACAACCTACAAACACATAGCCATCCATTCTAATCACTTGGATCATTAATGATAGGGTGATGGTAGAGGTCACTAAAGGGCAAAGTCACAAATGGTTTGAATGAGAAGAAATCCCACCCTTGTTTAA	-			P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	118	597	0	ENST00000397062.3:c.46-326_224del		p.X16_splice	ENST00000397062	NM_006164.4	16																																																																																
CHEK2	11200	MSKCC	GRCh37	22	29121090	29121090	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	328	642	1	ENST00000328354.6:c.467A>T	p.Tyr156Phe	p.Y156F	ENST00000328354	NM_007194.3	156	tAc/tTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217116	66217116	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	40	380	3	ENST00000273854.3:c.2499C>A	p.Tyr833Ter	p.Y833*	ENST00000273854	NM_004439.5	833	taC/taA																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081671	143081671	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	28	329	0	ENST00000262992.4:c.1403G>C	p.Ser468Thr	p.S468T	ENST00000262992	NM_001101669.1	468	aGt/aCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	45	573	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987177	36987177	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	126	609	3	ENST00000354822.5:c.512del	p.Gly171AlafsTer9	p.G171Afs*9	ENST00000354822	NM_001079668.2	171	gGc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578517	7578520	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-			P-0017389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1231	114	821	0	ENST00000269305.4:c.410_413del	p.Leu137ProfsTer32	p.L137Pfs*32	ENST00000269305	NM_001126112.2	137	cTGGCc/cc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0017390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	237	445	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624299	89624299	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	146	465	0	ENST00000371953.3:c.73T>G	p.Leu25Val	p.L25V	ENST00000371953	NM_000314.4	25	Ttg/Gtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0017422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	300	452	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952141	178952142	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0017422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	231	415	2	ENST00000263967.3:c.3196_3197delinsTT	p.Ala1066Leu	p.A1066L	ENST00000263967	NM_006218.2	1066	GCa/TTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874092	151874092	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	161	555	0	ENST00000262189.6:c.8446T>A	p.Ser2816Thr	p.S2816T	ENST00000262189	NM_170606.2	2816	Tcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	337	696	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	168	463	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64132833	64132833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1309	130	644	1	ENST00000334205.4:c.967C>T	p.Arg323Cys	p.R323C	ENST00000334205	NM_003942.2	323	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	218	601	0	ENST00000269305.4:c.569del	p.Pro190LeufsTer57	p.P190Lfs*57	ENST00000269305	NM_001126112.2	190	cCt/ct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105635	27105635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	122	377	0	ENST00000324856.7:c.5246G>T	p.Arg1749Met	p.R1749M	ENST00000324856	NM_006015.4	1749	aGg/aTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217206	66217207	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	135	526	1	ENST00000273854.3:c.2408_2409delinsAA	p.Ala803Glu	p.A803E	ENST00000273854	NM_004439.5	803	gCC/gAA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213898	66213898	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	104	522	0	ENST00000273854.3:c.2532G>T	p.Trp844Cys	p.W844C	ENST00000273854	NM_004439.5	844	tgG/tgT																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843473	156843473	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	123	416	0	ENST00000524377.1:c.899G>T	p.Cys300Phe	p.C300F	ENST00000524377	NM_002529.3	300	tGc/tTc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163313579	163313579	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	266	550	0	ENST00000271452.3:c.730del	p.Ile244LeufsTer8	p.I244Lfs*8	ENST00000271452	NM_145697.2	242	acA/ac																																																																															
KDM5A	5927	MSKCC	GRCh37	12	465599	465599	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	109	567	0	ENST00000399788.2:c.777A>T	p.Glu259Asp	p.E259D	ENST00000399788	NM_001042603.1	259	gaA/gaT																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858597	57858597	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1206	117	635	1	ENST00000228682.2:c.335C>A	p.Ser112Ter	p.S112*	ENST00000228682	NM_005269.2	112	tCg/tAg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28882990	28882990	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	109	700	0	ENST00000282397.4:c.3710C>A	p.Ser1237Tyr	p.S1237Y	ENST00000282397	NM_002019.4	1237	tCc/tAc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59858219	59858219	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	146	493	0	ENST00000259008.2:c.1776G>T	p.Trp592Cys	p.W592C	ENST00000259008	NM_032043.2	592	tgG/tgT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248538	212248539	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	151	440	1	ENST00000342788.4:c.3728_3729delinsTT	p.Trp1243Phe	p.W1243F	ENST00000342788	NM_005235.2	1243	tGG/tTT																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89462302	89462302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	154	535	0	ENST00000336596.2:c.1774G>T	p.Gly592Cys	p.G592C	ENST00000336596	NM_005233.5	592	Ggt/Tgt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873092	134873092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	213	610	0	ENST00000398015.3:c.1396G>T	p.Asp466Tyr	p.D466Y	ENST00000398015	NM_004441.4	466	Gac/Tac																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55143626	55143626	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	68	391	1	ENST00000257290.5:c.1858C>A	p.Pro620Thr	p.P620T	ENST00000257290	NM_006206.4	620	Cct/Act																																																																															
NSD1	64324	MSKCC	GRCh37	5	176639041	176639139	+	inframe_deletion	In_Frame_Del	DEL	TTGAGGAACCACTGACAGAGCAAAATCATGCTGACTGCTTAGATTCAGCTGGGCCACGGTTAAATGTTTGTGATAAATCCAGTGCCAGCATTGGTGACA	TTGAGGAACCACTGACAGAGCAAAATCATGCTGACTGCTTAGATTCAGCTGGGCCACGGTTAAATGTTTGTGATAAATCCAGTGCCAGCATTGGTGACA	-			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	129	566	0	ENST00000439151.2:c.3642_3740del	p.Glu1216_Glu1248del	p.E1216_E1248del	ENST00000439151	NM_022455.4	1214	cTTGAGGAACCACTGACAGAGCAAAATCATGCTGACTGCTTAGATTCAGCTGGGCCACGGTTAAATGTTTGTGATAAATCCAGTGCCAGCATTGGTGACAtg/ctg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053182	180053182	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	195	690	1	ENST00000261937.6:c.1187C>A	p.Thr396Asn	p.T396N	ENST00000261937	NM_182925.4	396	aCc/aAc																																																																															
HGF	3082	MSKCC	GRCh37	7	81388038	81388038	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	239	626	0	ENST00000222390.5:c.337G>C	p.Gly113Arg	p.G113R	ENST00000222390	NM_000601.4	113	Ggc/Cgc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410394	63410394	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1241	166	657	0	ENST00000330258.3:c.2773C>A	p.Gln925Lys	p.Q925K	ENST00000330258	NM_152424.3	925	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0017429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	102	546	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	84	711	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ATM	472	MSKCC	GRCh37	11	108202231	108202231	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1119	207	599	0	ENST00000278616.4:c.7576A>G	p.Arg2526Gly	p.R2526G	ENST00000278616	NM_000051.3	2526	Aga/Gga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0017432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1314	1201	606	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	203	531	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
YES1	7525	MSKCC	GRCh37	18	743392	743392	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	129	409	0	ENST00000314574.4:c.748A>C	p.Lys250Gln	p.K250Q	ENST00000314574	NM_005433.3	250	Aag/Cag																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	209	643	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292385	15292385	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0017432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	116	411	0	ENST00000263388.2:c.2792+2T>G		p.X931_splice	ENST00000263388	NM_000435.2	931																																																																																
HGF	3082	MSKCC	GRCh37	7	81399215	81399215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	185	494	1	ENST00000222390.5:c.73G>T	p.Ala25Ser	p.A25S	ENST00000222390	NM_000601.4	25	Gcc/Tcc																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20159743	20159743	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	185	433	0	ENST00000379607.5:c.16G>A	p.Gly6Ser	p.G6S	ENST00000379607	NM_001412.3	6	Ggt/Agt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0017437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	245	497	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0017437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	60	301	1	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
MGA	23269	MSKCC	GRCh37	15	41962039	41962039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	161	505	0	ENST00000219905.7:c.947C>T	p.Thr316Ile	p.T316I	ENST00000219905	NM_001164273.1	316	aCa/aTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0017438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	180	319	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
NF1	4763	MSKCC	GRCh37	17	29665752	29665755	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0017438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	320	413	0	ENST00000358273.4:c.6852_6855delTTAC	p.Tyr2285ThrfsTer5	p.Y2285Tfs*5	ENST00000358273	NM_001042492.2	2284	ACTTac/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577560	7577560	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	292	357	0	ENST00000269305.4:c.721T>G	p.Ser241Ala	p.S241A	ENST00000269305	NM_001126112.2	241	Tcc/Gcc																																																																															
FH	2271	MSKCC	GRCh37	1	241676932	241676932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	223	444	0	ENST00000366560.3:c.349G>A	p.Ala117Thr	p.A117T	ENST00000366560	NM_000143.3	117	Gct/Act																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720728	89720728	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	19	91	0	ENST00000371953.3:c.880del	p.Ser294ValfsTer13	p.S294Vfs*13	ENST00000371953	NM_000314.4	293	ggA/gg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46211653	46211653	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	156	309	0	ENST00000334344.6:c.619G>T	p.Ala207Ser	p.A207S	ENST00000334344	NM_152641.2	207	Gcc/Tcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435958	49435958	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	197	524	2	ENST00000301067.7:c.6023A>T	p.Lys2008Met	p.K2008M	ENST00000301067	NM_003482.3	2008	aAg/aTg																																																																															
BLM	641	MSKCC	GRCh37	15	91347466	91347466	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	227	466	0	ENST00000355112.3:c.3628C>G	p.Gln1210Glu	p.Q1210E	ENST00000355112	NM_000057.2	1210	Cag/Gag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858574	9858574	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	167	386	0	ENST00000330684.3:c.2827T>A	p.Tyr943Asn	p.Y943N	ENST00000330684	NM_001134407.1	943	Tac/Aac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916122	9916122	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	160	377	0	ENST00000330684.3:c.2167G>T	p.Gly723Trp	p.G723W	ENST00000330684	NM_001134407.1	723	Ggg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	271	650	0	ENST00000269305.4:c.400T>G	p.Phe134Val	p.F134V	ENST00000269305	NM_001126112.2	134	Ttt/Gtt																																																																															
NF1	4763	MSKCC	GRCh37	17	29586075	29586075	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	189	334	0	ENST00000358273.4:c.4358T>G	p.Val1453Gly	p.V1453G	ENST00000358273	NM_001042492.2	1453	gTt/gGt																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30315462	30315462	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	297	510	0	ENST00000322652.5:c.1147G>C	p.Glu383Gln	p.E383Q	ENST00000322652	NM_015355.2	383	Gag/Cag																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40458324	40458324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	69	141	1	ENST00000345506.4:c.1539G>A	p.Met513Ile	p.M513I	ENST00000345506	NM_003152.3	513	atG/atA																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56780607	56780607	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	310	526	0	ENST00000337432.4:c.622A>G	p.Ile208Val	p.I208V	ENST00000337432	NM_058216.2	208	Att/Gtt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581234	48581234	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	221	501	0	ENST00000342988.3:c.538C>T	p.Gln180Ter	p.Q180*	ENST00000342988	NM_005359.5	180	Caa/Taa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610499	10610499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	151	404	1	ENST00000171111.5:c.211C>T	p.Arg71Trp	p.R71W	ENST00000171111	NM_203500.1	71	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101925	11101925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	236	585	1	ENST00000344626.4:c.1345G>A	p.Glu449Lys	p.E449K	ENST00000344626	NM_003072.3	449	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524084	187524084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	243	466	0	ENST00000441802.2:c.11455C>T	p.Pro3819Ser	p.P3819S	ENST00000441802	NM_005245.3	3819	Ccc/Tcc																																																																															
SDHA	6389	MSKCC	GRCh37	5	235365	235365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	156	418	0	ENST00000264932.6:c.1171G>T	p.Ala391Ser	p.A391S	ENST00000264932	NM_004168.2	391	Gct/Tct																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39002721	39002721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	229	369	0	ENST00000357387.3:c.308G>A	p.Gly103Glu	p.G103E	ENST00000357387	NM_152756.3	103	gGg/gAg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39074458	39074458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	166	309	0	ENST00000357387.3:c.22C>A	p.Arg8Ser	p.R8S	ENST00000357387	NM_152756.3	8	Cgc/Agc																																																																															
SESN1	27244	MSKCC	GRCh37	6	109309850	109309850	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	479	503	1	ENST00000436639.2:c.1465G>T	p.Asp489Tyr	p.D489Y	ENST00000436639	NM_014454.2	489	Gat/Tat																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730075	41730075	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	264	387	0	ENST00000242208.4:c.454C>G	p.Arg152Gly	p.R152G	ENST00000242208	NM_002192.2	152	Cgt/Ggt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513302	106513302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	71	374	3	ENST00000359195.3:c.2206G>T	p.Val736Phe	p.V736F	ENST00000359195	NM_002649.2	736	Gtc/Ttc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545788	106545788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	190	408	0	ENST00000359195.3:c.3265C>T	p.His1089Tyr	p.H1089Y	ENST00000359195	NM_002649.2	1089	Cat/Tat																																																																															
NBN	4683	MSKCC	GRCh37	8	90955596	90955596	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	145	279	0	ENST00000265433.3:c.2071-2A>G		p.X691_splice	ENST00000265433	NM_002485.4	691																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53224522	53224522	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	226	263	0	ENST00000375401.3:c.3191G>C	p.Gly1064Ala	p.G1064A	ENST00000375401	NM_004187.3	1064	gGg/gCg																																																																															
ATRX	546	MSKCC	GRCh37	X	76874340	76874341	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0017439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	318	251	0	ENST00000373344.5:c.5381_5382delinsAT	p.Met1794Asn	p.M1794N	ENST00000373344	NM_000489.3	1794	aTG/aAT																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779620	3779620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	262	629	0	ENST00000262367.5:c.5428C>T	p.Arg1810Cys	p.R1810C	ENST00000262367	NM_004380.2	1810	Cgc/Tgc																																																																															
TET2	54790	MSKCC	GRCh37	4	106157975	106157986	+	inframe_deletion	In_Frame_Del	DEL	AGCAAGAACAGC	AGCAAGAACAGC	-			P-0017442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	172	429	0	ENST00000380013.4:c.2881_2892del	p.Glu961_Gln964del	p.E961_Q964del	ENST00000380013	NM_001127208.2	959	aAGCAAGAACAGCag/aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690812	89690816	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAC	AAGAC	-			P-0017443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	108	365	0	ENST00000371953.3:c.220_224del	p.Arg74LeufsTer2	p.R74Lfs*2	ENST00000371953	NM_000314.4	73	gaAAGACat/gaat																																																																															
MET	4233	MSKCC	GRCh37	7	116411862	116411898	+	splice_region_variant,intron_variant	Splice_Region	DEL	TAGCCGTCTTTAACAAGCTCTTTCTTTCTCTCTGTTT	TAGCCGTCTTTAACAAGCTCTTTCTTTCTCTCTGTTT	-			P-0017443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	388	702	0	ENST00000397752.3:c.2888-39_2888-3del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0017446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	209	578	1	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																															
NF1	4763	MSKCC	GRCh37	17	29685515	29685516	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	217	370	0	ENST00000358273.4:c.7989dup	p.Lys2664Ter	p.K2664*	ENST00000358273	NM_001042492.2	2663	tct/tcTt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119840	70119853	+	frameshift_variant	Frame_Shift_Del	DEL	ACGTCATCTCCAAC	ACGTCATCTCCAAC	-			P-0017446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	301	573	0	ENST00000245479.2:c.843_856del	p.Val282ArgfsTer9	p.V282Rfs*9	ENST00000245479	NM_000346.3	281	gACGTCATCTCCAAC/g																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729908	30729908	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0017446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	33	386	0	ENST00000359013.4:c.1504A>T	p.Lys502Ter	p.K502*	ENST00000359013	NM_001024847.2	502	Aag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	183	501	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112389	115112389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	66	336	0	ENST00000257566.3:c.1351G>A	p.Ala451Thr	p.A451T	ENST00000257566	NM_016569.3	451	Gcg/Acg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	1561	423	1	ENST00000371085.3:c.602G>T	p.Arg201Leu	p.R201L	ENST00000371085	NM_000516.4	201	cGt/cTt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162688924	162688924	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	220	413	0	ENST00000367921.3:c.71A>T	p.Gln24Leu	p.Q24L	ENST00000367921	NM_006182.2	24	cAg/cTg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23640525	23640525	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0017448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	193	474	1	ENST00000261584.4:c.2586G>T	p.Lys862Asn	p.K862N	ENST00000261584	NM_024675.3	862	aaG/aaT																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353737	15353737	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	197	552	0	ENST00000263377.2:c.3143A>C	p.His1048Pro	p.H1048P	ENST00000263377	NM_058243.2	1048	cAc/cCc																																																																															
ALK	238	MSKCC	GRCh37	2	29432674	29432674	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770027238		P-0017448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	89	490	0	ENST00000389048.3:c.3814G>A	p.Gly1272Arg	p.G1272R	ENST00000389048	NM_004304.4	1272	Ggg/Agg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436360	52436360	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	120	392	0	ENST00000460680.1:c.2134C>T	p.Gln712Ter	p.Q712*	ENST00000460680	NM_004656.3	712	Cag/Tag																																																																															
KDR	3791	MSKCC	GRCh37	4	55953788	55953788	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	82	463	0	ENST00000263923.4:c.3648C>A	p.Asn1216Lys	p.N1216K	ENST00000263923	NM_002253.2	1216	aaC/aaA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945094	151945096	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0017448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	70	615	0	ENST00000262189.6:c.2423_2425del	p.Ala808del	p.A808del	ENST00000262189	NM_170606.2	808	gCTGga/gga																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123480595	123480595	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	166	342	0	ENST00000371139.4:c.103G>T	p.Glu35Ter	p.E35*	ENST00000371139	NM_001114937.2	35	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0017462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	772	651	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692837	89692837	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	38	161	0	ENST00000371953.3:c.321T>A	p.Asp107Glu	p.D107E	ENST00000371953	NM_000314.4	107	gaT/gaA																																																																															
FANCA	2175	MSKCC	GRCh37	16	89849440	89849440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	263	486	0	ENST00000389301.3:c.1541C>G	p.Ala514Gly	p.A514G	ENST00000389301	NM_000135.2	514	gCc/gGc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120846	94120846	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	212	508	0	ENST00000369303.4:c.205C>G	p.Arg69Gly	p.R69G	ENST00000369303	NM_004440.3	69	Cga/Gga																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137540458	137540458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	153	289	2	ENST00000367739.4:c.7C>T	p.Leu3Phe	p.L3F	ENST00000367739	NM_000416.2	3	Ctc/Ttc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56839415	56839415	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0017462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1252	141	347	0	ENST00000308159.5:c.361-1G>C		p.X121_splice	ENST00000308159	NM_014669.4	121																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40709552	40709552	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0017462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	201	524	0	ENST00000373198.4:c.4350C>G	p.Tyr1450Ter	p.Y1450*	ENST00000373198	NM_133170.3	1450	taC/taG																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217319	66217319	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0017462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	79	204	2	ENST00000273854.3:c.2299-3C>T		p.X767_splice	ENST00000273854	NM_004439.5	767																																																																																
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0017465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	429	598	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	104	305	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0017465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	184	459	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022592	31022592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	335	552	2	ENST00000375687.4:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000375687	NM_015338.5	693	Cga/Tga																																																																															
ALK	238	MSKCC	GRCh37	2	29498078	29498078	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	43	449	0	ENST00000389048.3:c.1928A>G	p.Lys643Arg	p.K643R	ENST00000389048	NM_004304.4	643	aAg/aGg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410609	63410609	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	31	283	0	ENST00000330258.3:c.2558A>C	p.Asn853Thr	p.N853T	ENST00000330258	NM_152424.3	853	aAc/aCc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106034	8106034	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	59	438	0	ENST00000346208.3:c.854A>G	p.Asn285Ser	p.N285S	ENST00000346208		285	aAc/aGc																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43762147	43762159	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGTGGACTCAG	ACAGTGGACTCAG	-			P-0017465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	206	609	0	ENST00000382044.4:c.1286_1298del	p.Pro429HisfsTer58	p.P429Hfs*58	ENST00000382044	NM_001141980.1	429	cCTGAGTCCACTGTa/ca																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56801442	56801442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	247	617	0	ENST00000337432.4:c.946C>A	p.His316Asn	p.H316N	ENST00000337432	NM_058216.2	316	Cat/Aat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573585	48573585	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	187	469	0	ENST00000342988.3:c.169T>G	p.Leu57Val	p.L57V	ENST00000342988	NM_005359.5	57	Tta/Gta																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129102	152129102	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	67	596	0	ENST00000206249.3:c.55C>G	p.Gln19Glu	p.Q19E	ENST00000206249	NM_000125.3	19	Caa/Gaa																																																																															
AR	367	MSKCC	GRCh37	X	66766030	66766030	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	48	345	0	ENST00000374690.3:c.1042T>C	p.Tyr348His	p.Y348H	ENST00000374690	NM_000044.3	348	Tac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0017466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1335	43	639	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1187	310	629	0	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94910994	94910994	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	498	560	0	ENST00000536441.1:c.1136T>C	p.Phe379Ser	p.F379S	ENST00000536441	NM_144665.3	379	tTt/tCt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2122849	2122849	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0017466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	28	424	0	ENST00000219476.3:c.2221-1G>A		p.X741_splice	ENST00000219476	NM_000548.3	741																																																																																
TSC2	7249	MSKCC	GRCh37	16	2131595	2131595	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs200739533		P-0017466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	48	463	0	ENST00000219476.3:c.3611-1G>A		p.X1204_splice	ENST00000219476	NM_000548.3	1204																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48581348	48581348	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	372	422	0	ENST00000342988.3:c.653del	p.Pro218LeufsTer23	p.P218Lfs*23	ENST00000342988	NM_005359.5	218	Cct/ct																																																																															
DAXX	1616	MSKCC	GRCh37	6	33286552	33286552	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	406	385	0	ENST00000374542.5:c.2191G>T	p.Glu731Ter	p.E731*	ENST00000374542	NM_001141970.1	731	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	699	689	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
TET2	54790	MSKCC	GRCh37	4	106156981	106156981	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	237	528	2	ENST00000380013.4:c.1882G>T	p.Glu628Ter	p.E628*	ENST00000380013	NM_001127208.2	628	Gag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141497	11141498	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	200	629	0	ENST00000344626.4:c.3480dup	p.Leu1161AlafsTer15	p.L1161Afs*15	ENST00000344626	NM_003072.3	1158	-/G																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21994138	21994138	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	162	462	0	ENST00000361570.3:c.316G>A	p.Gly106Ser	p.G106S	ENST00000361570	NM_058195.3	106	Ggt/Agt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781816	9781841	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGCTCCGAGATGCACGTGCCGTCGG	CAGCTCCGAGATGCACGTGCCGTCGG	-			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	96	514	0	ENST00000377346.4:c.1956-3_1978del		p.X652_splice	ENST00000377346	NM_005026.3	652																																																																																
ARID2	196528	MSKCC	GRCh37	12	46231153	46231153	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	108	377	0	ENST00000334344.6:c.1073C>G	p.Thr358Ser	p.T358S	ENST00000334344	NM_152641.2	358	aCt/aGt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008313	29008313	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	153	331	0	ENST00000282397.4:c.558G>T	p.Trp186Cys	p.W186C	ENST00000282397	NM_002019.4	186	tgG/tgT																																																																															
BRCA2	675	MSKCC	GRCh37	13	32899264	32899264	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	92	428	1	ENST00000380152.3:c.368A>T	p.Lys123Ile	p.K123I	ENST00000380152		123	aAa/aTa																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281744	49281744	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	251	675	0	ENST00000282018.3:c.791A>G	p.His264Arg	p.H264R	ENST00000282018	NM_020377.2	264	cAc/cGc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576129	88576129	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	89	536	1	ENST00000360948.2:c.1544A>T	p.Gln515Leu	p.Q515L	ENST00000360948	NM_001012338.2	515	cAg/cTg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37673767	37673767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1243	79	696	2	ENST00000447079.4:c.2921C>T	p.Pro974Leu	p.P974L	ENST00000447079	NM_015083.1	974	cCg/cTg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740509	58740509	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	288	582	0	ENST00000305921.3:c.1414G>T	p.Glu472Ter	p.E472*	ENST00000305921	NM_003620.3	472	Gaa/Taa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220611	1220611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	243	557	0	ENST00000326873.7:c.629del	p.Cys210SerfsTer77	p.C210Sfs*77	ENST00000326873	NM_000455.4	210	tGc/tc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19261495	19261496	+	missense_variant	Missense_Mutation	DNP	CG	CG	GA			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	217	555	1	ENST00000162023.5:c.49_50delinsTC	p.Arg17Ser	p.R17S	ENST00000162023		17	CGg/TCg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133613	55133613	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	178	472	0	ENST00000257290.5:c.917C>A	p.Thr306Asn	p.T306N	ENST00000257290	NM_006206.4	306	aCt/aAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280161	66280162	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	94	217	1	ENST00000273854.3:c.1528-1_1528delinsTT		p.X510_splice	ENST00000273854	NM_004439.5	510																																																																																
PARK2	5071	MSKCC	GRCh37	6	162683691	162683691	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	66	458	0	ENST00000366898.1:c.278del	p.Gly93GlufsTer10	p.G93Efs*10	ENST00000366898	NM_004562.2	93	gGa/ga																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874263	155874263	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	156	527	0	ENST00000368323.3:c.268A>G	p.Met90Val	p.M90V	ENST00000368323	NM_006912.5	90	Atg/Gtg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602583	10602583	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	124	422	0	ENST00000171111.5:c.995G>T	p.Gly332Val	p.G332V	ENST00000171111	NM_203500.1	332	gGc/gTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1222987	1222987	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	107	417	0	ENST00000326873.7:c.924G>C	p.Trp308Cys	p.W308C	ENST00000326873	NM_000455.4	308	tgG/tgC																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135023	11135047	+	frameshift_variant	Frame_Shift_Del	DEL	AGTGCGACATGTCTGCGCTGCAGCG	AGTGCGACATGTCTGCGCTGCAGCG	-			P-0017469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	121	468	0	ENST00000344626.4:c.2995_3019del	p.Asp999SerfsTer12	p.D999Sfs*12	ENST00000344626	NM_003072.3	997	aAGTGCGACATGTCTGCGCTGCAGCGa/aa																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2494659	2494659	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	105	558	0	ENST00000355716.4:c.799G>T	p.Val267Leu	p.V267L	ENST00000355716	NM_003820.2	267	Gtg/Ttg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0017476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	34	419	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100999	41100999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	43	285	2	ENST00000373198.4:c.1357C>T	p.Arg453Cys	p.R453C	ENST00000373198	NM_133170.3	453	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0017476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	45	344	0	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	251	554	0	ENST00000269305.4:c.859G>A	p.Glu287Lys	p.E287K	ENST00000269305	NM_001126112.2	287	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0017478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	278	417	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597416	10597416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	383	518	0	ENST00000171111.5:c.1787G>A	p.Arg596Gln	p.R596Q	ENST00000171111	NM_203500.1	596	cGa/cAa																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216947	7216947	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	188	383	1	ENST00000380728.2:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000380728		192	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092825	27092825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	55	540	0	ENST00000324856.7:c.2846C>T	p.Ser949Phe	p.S949F	ENST00000324856	NM_006015.4	949	tCc/tTc																																																																															
AR	367	MSKCC	GRCh37	X	66765047	66765047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	324	615	1	ENST00000374690.3:c.59G>A	p.Arg20Gln	p.R20Q	ENST00000374690	NM_000044.3	20	cGa/cAa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004625	150004625	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	227	377	0	ENST00000253339.5:c.1600G>C	p.Glu534Gln	p.E534Q	ENST00000253339		534	Gag/Cag																																																																															
RET	5979	MSKCC	GRCh37	10	43612071	43612071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	346	542	0	ENST00000355710.3:c.2176C>T	p.Leu726Phe	p.L726F	ENST00000355710	NM_020975.4	726	Ctt/Ttt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041084	29041084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	257	413	0	ENST00000282397.4:c.344C>T	p.Ser115Leu	p.S115L	ENST00000282397	NM_002019.4	115	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577077	7577079	+	frameshift_variant	Frame_Shift_Del	DEL	CTC	CTC	TT			P-0017478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	251	551	3	ENST00000269305.4:c.859_861delinsAA	p.Glu287LysfsTer58	p.E287Kfs*58	ENST00000269305	NM_001126112.2	287	GAG/AA																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350822	15350822	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200902225		P-0017478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	226	416	0	ENST00000263377.2:c.3181G>A	p.Glu1061Lys	p.E1061K	ENST00000263377	NM_058243.2	1061	Gaa/Aaa																																																																															
CIC	23152	MSKCC	GRCh37	19	42797215	42797215	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	256	478	0	ENST00000575354.2:c.3577G>C	p.Glu1193Gln	p.E1193Q	ENST00000575354	NM_015125.3	1193	Gag/Cag																																																																															
TOP1	7150	MSKCC	GRCh37	20	39742646	39742646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	183	255	1	ENST00000361337.2:c.1489G>A	p.Glu497Lys	p.E497K	ENST00000361337	NM_003286.2	497	Gaa/Aaa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445091	89445091	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	159	364	0	ENST00000336596.2:c.1411G>T	p.Glu471Ter	p.E471*	ENST00000336596	NM_005233.5	471	Gag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540108	187540108	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	198	387	0	ENST00000441802.2:c.7632G>C	p.Glu2544Asp	p.E2544D	ENST00000441802	NM_005245.3	2544	gaG/gaC																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149456971	149456971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	169	347	1	ENST00000286301.3:c.757C>T	p.His253Tyr	p.H253Y	ENST00000286301	NM_005211.3	253	Cat/Tat																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149456979	149456979	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	143	304	0	ENST00000286301.3:c.749C>G	p.Ser250Cys	p.S250C	ENST00000286301	NM_005211.3	250	tCt/tGt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467652	50467652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	208	414	0	ENST00000331340.3:c.887G>A	p.Ser296Asn	p.S296N	ENST00000331340	NM_006060.4	296	aGc/aAc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38272363	38272363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	207	415	0	ENST00000425967.3:c.2004G>A	p.Met668Ile	p.M668I	ENST00000425967	NM_001174067.1	668	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7576872	7576872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	202	434	0	ENST00000269305.4:c.974G>A	p.Gly325Glu	p.G325E	ENST00000269305	NM_001126112.2	325	gGa/gAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	17	442	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692922	89692922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	36	428	0	ENST00000371953.3:c.406T>C	p.Cys136Arg	p.C136R	ENST00000371953	NM_000314.4	136	Tgt/Cgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0017481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	155	417	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73774973	73774973	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	23	190	0	ENST00000254810.4:c.200C>G	p.Pro67Arg	p.P67R	ENST00000254810	NM_005324.3	67	cCc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0017484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	243	483	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																															
HRAS	3265	MSKCC	GRCh37	11	534285	534285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	283	408	0	ENST00000311189.7:c.38G>T	p.Gly13Val	p.G13V	ENST00000311189		13	gGt/gTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164505	47164505	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	128	284	2	ENST00000409792.3:c.1621C>T	p.Arg541Ter	p.R541*	ENST00000409792	NM_014159.6	541	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984519	72984519	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	201	424	0	ENST00000268489.5:c.3065del	p.Gly1022AlafsTer47	p.G1022Afs*47	ENST00000268489	NM_006885.3	1022	gGc/gc																																																																															
NF1	4763	MSKCC	GRCh37	17	29560069	29560070	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0017484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	113	256	0	ENST00000358273.4:c.3547_3548del	p.Leu1183AspfsTer11	p.L1183Dfs*11	ENST00000358273	NM_001042492.2	1182	gtTCtg/gttg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189926	66189926	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	54	221	0	ENST00000273854.3:c.3020G>T	p.Arg1007Leu	p.R1007L	ENST00000273854	NM_004439.5	1007	cGg/cTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549446	187549446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	232	397	0	ENST00000441802.2:c.4672C>T	p.His1558Tyr	p.H1558Y	ENST00000441802	NM_005245.3	1558	Cac/Tac																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750779	57750779	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	162	386	0	ENST00000274289.3:c.1825G>T	p.Asp609Tyr	p.D609Y	ENST00000274289	NM_006622.3	609	Gat/Tat																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056181	26056181	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	139	288	0	ENST00000343677.2:c.476A>G	p.Lys159Arg	p.K159R	ENST00000343677	NM_005319.3	159	aAg/aGg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104593	69104593	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	239	458	0	ENST00000288368.4:c.4437G>T	p.Leu1479Phe	p.L1479F	ENST00000288368	NM_024870.2	1479	ttG/ttT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521446	8521446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	231	449	0	ENST00000356435.5:c.792G>A	p.Met264Ile	p.M264I	ENST00000356435		264	atG/atA																																																																															
TEK	7010	MSKCC	GRCh37	9	27190538	27190538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	204	444	1	ENST00000380036.4:c.1339C>T	p.Pro447Ser	p.P447S	ENST00000380036	NM_000459.3	447	Ccc/Tcc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135778026	135778026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	173	273	2	ENST00000298552.3:c.2357G>T	p.Arg786Leu	p.R786L	ENST00000298552	NM_001162426.1	786	cGa/cTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	156	468	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	125	416	2	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099979	27099980	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	188	567	0	ENST00000324856.7:c.3859dup	p.Arg1287LysfsTer11	p.R1287Kfs*11	ENST00000324856	NM_006015.4	1286	-/A																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2214573	2214573	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	160	497	0	ENST00000398665.3:c.1901A>T	p.Gln634Leu	p.Q634L	ENST00000398665	NM_032482.2	634	cAg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0017487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	205	602	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0017487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	753	857	0	ENST00000269305.4:c.376T>G	p.Tyr126Asp	p.Y126D	ENST00000269305	NM_001126112.2	126	Tac/Gac																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120461979	120461979	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	32	337	0	ENST00000256646.2:c.5737C>A	p.Pro1913Thr	p.P1913T	ENST00000256646	NM_024408.3	1913	Cca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	148	518	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0017498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	102	582	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81925111	81925111	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	39	387	0	ENST00000359376.3:c.902T>C	p.Ile301Thr	p.I301T	ENST00000359376	NM_002661.3	301	aTc/aCc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221050	5221050	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	30	315	0	ENST00000357368.4:c.3416T>A	p.Met1139Lys	p.M1139K	ENST00000357368	NM_002850.3	1139	aTg/aAg																																																																															
MST1	4485	MSKCC	GRCh37	3	49725049	49725049	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	38	460	0	ENST00000449682.2:c.295C>T	p.Gln99Ter	p.Q99*	ENST00000449682	NM_020998.3	99	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	39	530	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	63	536	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499449	89499449	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	46	397	2	ENST00000336596.2:c.2619G>T	p.Gln873His	p.Q873H	ENST00000336596	NM_005233.5	873	caG/caT																																																																															
RB1	5925	MSKCC	GRCh37	13	49037972	49037972	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	35	333	0	ENST00000267163.4:c.2211+1G>A		p.X737_splice	ENST00000267163	NM_000321.2	737																																																																																
WT1	7490	MSKCC	GRCh37	11	32439182	32439182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	32	463	1	ENST00000332351.3:c.891G>T	p.Met297Ile	p.M297I	ENST00000332351	NM_024426.4	297	atG/atT																																																																															
CDC73	79577	MSKCC	GRCh37	1	193119474	193119474	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	55	386	0	ENST00000367435.3:c.869A>G	p.Tyr290Cys	p.Y290C	ENST00000367435	NM_024529.4	290	tAt/tGt																																																																															
RET	5979	MSKCC	GRCh37	10	43604494	43604495	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	50	520	4	ENST00000355710.3:c.1079_1080delinsTT	p.Arg360Leu	p.R360L	ENST00000355710	NM_020975.4	360	cGG/cTT																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865260	57865260	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	43	524	0	ENST00000228682.2:c.2741del	p.Gly914AlafsTer32	p.G914Afs*32	ENST00000228682	NM_005269.2	913	Ggg/gg																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281716	49281716	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	66	639	0	ENST00000282018.3:c.763A>G	p.Ile255Val	p.I255V	ENST00000282018	NM_020377.2	255	Atc/Gtc																																																																															
ALK	238	MSKCC	GRCh37	2	30143422	30143422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	25	346	1	ENST00000389048.3:c.104G>T	p.Gly35Val	p.G35V	ENST00000389048	NM_004304.4	35	gGg/gTg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200700	128200700	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	50	513	0	ENST00000341105.2:c.1105G>T	p.Val369Phe	p.V369F	ENST00000341105	NM_032638.4	369	Gtc/Ttc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372220	55372220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	42	394	0	ENST00000297316.4:c.910G>T	p.Gly304Trp	p.G304W	ENST00000297316	NM_022454.3	304	Ggg/Tgg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69032449	69032449	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	40	573	1	ENST00000288368.4:c.3523C>G	p.Leu1175Val	p.L1175V	ENST00000288368	NM_024870.2	1175	Ctc/Gtc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222954	53222954	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	74	653	0	ENST00000375401.3:c.4117+1G>T		p.X1373_splice	ENST00000375401	NM_004187.3	1373																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0017510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	192	483	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0017510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	354	342	1	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016603	12016603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	185	255	0	ENST00000353533.5:c.739G>T	p.Asp247Tyr	p.D247Y	ENST00000353533	NM_003010.3	247	Gac/Tac																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628326	90628326	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147578332		P-0017510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	79	472	0	ENST00000330062.3:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000330062	NM_002168.2	362	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398287	25398288	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTC			P-0017510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	279	503	0	ENST00000256078.4:c.29_31dup	p.Gly10dup	p.G10dup	ENST00000256078	NM_033360.2	10	gct/gGAGct																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265911	41266366	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTC	ACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTC	-			P-0017510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	41	31	0	ENST00000349496.5:c.14-101_242-74del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
RUNX1	861	MSKCC	GRCh37	21	36231782	36231782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	14	589	0	ENST00000300305.3:c.602G>A	p.Arg201Gln	p.R201Q	ENST00000300305		201	cGa/cAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910455	32910455	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	252	388	0	ENST00000380152.3:c.1964del	p.Pro655GlnfsTer5	p.P655Qfs*5	ENST00000380152		655	Cca/ca																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78426056	78426057	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0017524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	256	448	0	ENST00000370768.2:c.1468_1469del	p.Asn490SerfsTer34	p.N490Sfs*34	ENST00000370768	NM_003902.3	490	AAt/t																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375207	118375207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	209	308	0	ENST00000534358.1:c.8600G>A	p.Gly2867Asp	p.G2867D	ENST00000534358	NM_005933.3	2867	gGt/gAt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56390346	56390346	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	158	343	0	ENST00000348428.3:c.1085C>G	p.Pro362Arg	p.P362R	ENST00000348428	NM_006785.3	362	cCt/cGt																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091842	29091842	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147877722		P-0017524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	147	236	0	ENST00000328354.6:c.1115C>T	p.Ser372Phe	p.S372F	ENST00000328354	NM_007194.3	372	tCc/tTc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267382	198267382	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017530-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	176	426	0	ENST00000335508.6:c.1975C>G	p.Gln659Glu	p.Q659E	ENST00000335508	NM_012433.2	659	Caa/Gaa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0017533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1003	171	513	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56871637	56871637	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1253	112	665	2	ENST00000308159.5:c.2017C>T	p.Arg673Trp	p.R673W	ENST00000308159	NM_014669.4	673	Cgg/Tgg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138478069	138478125	+	inframe_deletion	In_Frame_Del	DEL	CCCAGTGGGCAAAAGGAAATCCACAGGTATGGAGCCATCAGATGCTATCTGTGAATC	CCCAGTGGGCAAAAGGAAATCCACAGGTATGGAGCCATCAGATGCTATCTGTGAATC	-			P-0017533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1124	124	584	0	ENST00000289153.2:c.61_117del	p.Asp21_Gly39del	p.D21_G39del	ENST00000289153	NM_006219.2	21	GATTCACAGATAGCATCTGATGGCTCCATACCTGTGGATTTCCTTTTGCCCACTGGG/-																																																																															
AKT1	207	MSKCC	GRCh37	14	105239264	105239264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	86	566	0	ENST00000349310.3:c.1123G>A	p.Glu375Lys	p.E375K	ENST00000349310	NM_001014432.1	375	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7573999	7574008	+	frameshift_variant	Frame_Shift_Del	DEL	TCTCGGAACA	TCTCGGAACA	-			P-0017533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1561	240	988	1	ENST00000269305.4:c.1019_1028del	p.Met340SerfsTer2	p.M340Sfs*2	ENST00000269305	NM_001126112.2	340	aTGTTCCGAGAg/ag																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30322647	30322647	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	160	461	0	ENST00000322652.5:c.1660C>T	p.Gln554Ter	p.Q554*	ENST00000322652	NM_015355.2	554	Caa/Taa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10260290	10260290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	92	432	0	ENST00000340748.4:c.2377C>T	p.His793Tyr	p.H793Y	ENST00000340748		793	Cac/Tac																																																																															
IDH1	3417	MSKCC	GRCh37	2	209108191	209108191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	77	482	0	ENST00000345146.2:c.658G>A	p.Asp220Asn	p.D220N	ENST00000345146	NM_005896.2	220	Gat/Aat																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1805531	1805531	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1262	324	737	0	ENST00000260795.2:c.1043C>G	p.Ser348Cys	p.S348C	ENST00000260795		348	tCt/tGt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127486	55127486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	206	598	3	ENST00000257290.5:c.274G>A	p.Ala92Thr	p.A92T	ENST00000257290	NM_006206.4	92	Gcg/Acg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117868405	117868405	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1391	179	698	1	ENST00000297338.2:c.937G>A	p.Val313Ile	p.V313I	ENST00000297338	NM_006265.2	313	Gtt/Att																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	346	446	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0017534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	31	357	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165548	47165548	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77310684		P-0017534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1194	119	548	1	ENST00000409792.3:c.578C>T	p.Pro193Leu	p.P193L	ENST00000409792	NM_014159.6	193	cCg/cTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18699296	18699296	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	133	341	0	ENST00000266497.5:c.3397G>C	p.Asp1133His	p.D1133H	ENST00000266497		1133	Gac/Cac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653826	89653827	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0017534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	150	254	0	ENST00000371953.3:c.125_126dup	p.Glu43LeufsTer12	p.E43Lfs*12	ENST00000371953	NM_000314.4	42	ctt/cTTtt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18699259	18699259	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0017534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	115	279	0	ENST00000266497.5:c.3360G>A	p.Met1120Ile	p.M1120I	ENST00000266497		1120	atG/atA																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18699338	18699338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	115	355	0	ENST00000266497.5:c.3439G>A	p.Asp1147Asn	p.D1147N	ENST00000266497		1147	Gac/Aac																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217801	2217801	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1265	73	786	2	ENST00000398665.3:c.2578del	p.Glu860SerfsTer208	p.E860Sfs*208	ENST00000398665	NM_032482.2	859	Ggg/gg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039369	47039369	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1198	498	868	0	ENST00000329236.7:c.761T>A	p.Val254Glu	p.V254E	ENST00000329236	NM_001204466.1	254	gTg/gAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	164	437	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0017540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	141	348	1	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591889	48591889	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1060500741		P-0017540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	204	489	0	ENST00000342988.3:c.1052A>T	p.Asp351Val	p.D351V	ENST00000342988	NM_005359.5	351	gAt/gTt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730915	40730915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	137	272	0	ENST00000373198.4:c.3620G>A	p.Arg1207His	p.R1207H	ENST00000373198	NM_133170.3	1207	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101712	27101712	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0017540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	137	361	0	ENST00000324856.7:c.4993+1G>C		p.X1665_splice	ENST00000324856	NM_006015.4	1665																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	181	314	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108154953	108154953	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0017546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	63	84	0	ENST00000278616.4:c.3747-1G>T		p.X1249_splice	ENST00000278616	NM_000051.3	1249																																																																																
LATS2	26524	MSKCC	GRCh37	13	21562744	21562744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	39	137	0	ENST00000382592.4:c.1175C>T	p.Ala392Val	p.A392V	ENST00000382592	NM_014572.2	392	gCg/gTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827441	72827441	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1706	113	1064	1	ENST00000268489.5:c.9140A>T	p.Gln3047Leu	p.Q3047L	ENST00000268489	NM_006885.3	3047	cAg/cTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29654605	29654605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	73	417	0	ENST00000358273.4:c.5357C>T	p.Ser1786Leu	p.S1786L	ENST00000358273	NM_001042492.2	1786	tCg/tTg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138198228	138198228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	38	177	0	ENST00000237289.4:c.821C>T	p.Pro274Leu	p.P274L	ENST00000237289	NM_001270507.1	274	cCa/cTa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041234	47041234	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1179	391	760	0	ENST00000329236.7:c.1431del	p.Thr478LeufsTer148	p.T478Lfs*148	ENST00000329236	NM_001204466.1	476	agC/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	121	274	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29550488	29550488	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	87	298	0	ENST00000358273.4:c.1748A>G	p.Lys583Arg	p.K583R	ENST00000358273	NM_001042492.2	583	aAg/aGg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65335079	65335079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	78	515	3	ENST00000342505.4:c.562G>A	p.Glu188Lys	p.E188K	ENST00000342505	NM_002227.2	188	Gag/Aag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11094832	11094832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	273	818	0	ENST00000344626.4:c.5C>A	p.Ser2Tyr	p.S2Y	ENST00000344626	NM_003072.3	2	tCc/tAc																																																																															
MET	4233	MSKCC	GRCh37	7	116411675	116411675	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	14	298	0	ENST00000397752.3:c.2854T>G	p.Phe952Val	p.F952V	ENST00000397752	NM_000245.2	952	Ttc/Gtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	407	389	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	289	468	0	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974760	21974760	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	185	306	0	ENST00000304494.5:c.67G>C	p.Gly23Arg	p.G23R	ENST00000304494	NM_000077.4	23	Ggt/Cgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	89	455	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220494	1220494	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	189	658	0	ENST00000326873.7:c.587G>T	p.Gly196Val	p.G196V	ENST00000326873	NM_000455.4	196	gGc/gTc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266730	18266730	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	136	366	0	ENST00000222254.8:c.41C>G	p.Pro14Arg	p.P14R	ENST00000222254	NM_005027.3	14	cCg/cGg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156607	55156607	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	80	533	0	ENST00000257290.5:c.3008G>T	p.Trp1003Leu	p.W1003L	ENST00000257290	NM_006206.4	1003	tGg/tTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217283	66217283	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	59	356	0	ENST00000273854.3:c.2332G>T	p.Val778Phe	p.V778F	ENST00000273854	NM_004439.5	778	Gtt/Ttt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467598	66467598	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	105	437	0	ENST00000273854.3:c.671T>A	p.Val224Asp	p.V224D	ENST00000273854	NM_004439.5	224	gTt/gAt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944829	131944829	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	25	183	0	ENST00000265335.6:c.2850G>T	p.Lys950Asn	p.K950N	ENST00000265335		950	aaG/aaT																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562800	176562800	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	90	521	0	ENST00000439151.2:c.696G>T	p.Gln232His	p.Q232H	ENST00000439151	NM_022455.4	232	caG/caT																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225414	26225414	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1593	242	1325	0	ENST00000360408.1:c.32C>A	p.Ser11Tyr	p.S11Y	ENST00000360408	NM_003532.2	11	tCc/tAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486280	8486280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	66	315	0	ENST00000356435.5:c.2537C>T	p.Pro846Leu	p.P846L	ENST00000356435		846	cCg/cTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041022	47041022	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	128	692	1	ENST00000329236.7:c.1318C>T	p.Gln440Ter	p.Q440*	ENST00000329236	NM_001204466.1	440	Cag/Tag																																																																															
AR	367	MSKCC	GRCh37	X	66941763	66941763	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1207	173	977	3	ENST00000374690.3:c.2407C>A	p.Gln803Lys	p.Q803K	ENST00000374690	NM_000044.3	803	Cag/Aag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32936726	32936728	+	stop_gained	Nonsense_Mutation	ONP	TAG	TAG	AAA			P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	67	373	1	ENST00000380152.3:c.7872_7874delinsAAA	p.Tyr2624_Arg2625delinsTer	p.Y2624_R2625delins*	ENST00000380152		2624	taTAGa/taAAAa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89813280	89813280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	109	396	2	ENST00000389301.3:c.3367G>A	p.Gly1123Arg	p.G1123R	ENST00000389301	NM_000135.2	1123	Gga/Aga																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877486	28877486	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	74	227	0	ENST00000282397.4:c.3835A>C	p.Ser1279Arg	p.S1279R	ENST00000282397	NM_002019.4	1279	Agt/Cgt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	266	335	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40727138	40727138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	357	452	0	ENST00000373198.4:c.3826G>A	p.Val1276Met	p.V1276M	ENST00000373198	NM_133170.3	1276	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	495	632	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																															
RB1	5925	MSKCC	GRCh37	13	48954222	48954237	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TAAATTTTTTACTTTT	TAAATTTTTTACTTTT	AAA			P-0017564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	204	268	1	ENST00000267163.4:c.1421+2_1421+17delinsAAA		p.X474_splice	ENST00000267163	NM_000321.2	474																																																																																
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1023835002		P-0017565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	120	383	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0017565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	189	239	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0017565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	195	258	0	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																															
B2M	567	MSKCC	GRCh37	15	45007620	45007620	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C	rs111947448		P-0017565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	23	186	0	ENST00000558401.1:c.68-1G>C		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
ALOX12B	242	MSKCC	GRCh37	17	7976198	7976198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	310	334	0	ENST00000319144.4:c.1997G>A	p.Arg666His	p.R666H	ENST00000319144	NM_001139.2	666	cGc/cAc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713463	30713536	+	frameshift_variant	Frame_Shift_Del	DEL	TGAAGCAGAACACTTCAGAGCAGTTTGAGACAGTGGCAGTCAAGATCTTTCCCTATGAGGAGTATGCCTCTTGG	TGAAGCAGAACACTTCAGAGCAGTTTGAGACAGTGGCAGTCAAGATCTTTCCCTATGAGGAGTATGCCTCTTGG	-			P-0017565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	167	277	0	ENST00000359013.4:c.863_936del	p.Leu288GlnfsTer15	p.L288Qfs*15	ENST00000359013	NM_001024847.2	288	cTGAAGCAGAACACTTCAGAGCAGTTTGAGACAGTGGCAGTCAAGATCTTTCCCTATGAGGAGTATGCCTCTTGG/c																																																																															
APC	324	MSKCC	GRCh37	5	112162945	112162945	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0017565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	168	270	0	ENST00000257430.4:c.1548+1G>A		p.X516_splice	ENST00000257430	NM_000038.5	516																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27092809	27092809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	143	637	0	ENST00000324856.7:c.2830C>T	p.Gln944Ter	p.Q944*	ENST00000324856	NM_006015.4	944	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517202		P-0017581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	98	532	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0017581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	20	211	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0017588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	14	547	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28578246	28578246	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	26	664	1	ENST00000241453.7:c.2925C>A	p.Phe975Leu	p.F975L	ENST00000241453	NM_004119.2	975	ttC/ttA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0017588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	38	672	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	154	191	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115737	8115737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1079	512	782	0	ENST00000346208.3:c.1083C>G	p.Ile361Met	p.I361M	ENST00000346208		361	atC/atG																																																																															
CBFB	865	MSKCC	GRCh37	16	67100631	67100631	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	450	501	1	ENST00000412916.2:c.329G>A	p.Trp110Ter	p.W110*	ENST00000412916		110	tGg/tAg																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27840030	27840030	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	645	1038	0	ENST00000328488.2:c.64G>C	p.Ala22Pro	p.A22P	ENST00000328488	NM_003533.2	22	Gcc/Ccc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034492	47034492	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0017594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1218	96	771	1	ENST00000329236.7:c.345+1G>A		p.X115_splice	ENST00000329236	NM_001204466.1	115																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242468	55242483	+	protein_altering_variant	In_Frame_Del	DEL	ATTAAGAGAAGCAACA	ATTAAGAGAAGCAACA	G			P-0017594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	109	445	0	ENST00000275493.2:c.2238_2253delATTAAGAGAAGCAACAinsG	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACA/gaG																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652129	36652129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34916193		P-0017596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	104	304	1	ENST00000244741.5:c.251G>A	p.Arg84Gln	p.R84Q	ENST00000244741	NM_000389.4	84	cGa/cAa																																																																															
TP63	8626	MSKCC	GRCh37	3	189584536	189584536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	160	471	0	ENST00000264731.3:c.832G>A	p.Asp278Asn	p.D278N	ENST00000264731	NM_003722.4	278	Gat/Aat																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136978	64136978	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0017596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	226	365	0	ENST00000334205.4:c.1489A>T	p.Lys497Ter	p.K497*	ENST00000334205	NM_003942.2	497	Aag/Tag																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608308	28608308	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	101	445	0	ENST00000241453.7:c.1748G>C	p.Gly583Ala	p.G583A	ENST00000241453	NM_004119.2	583	gGc/gCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55227854	55227854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	43	288	0	ENST00000275493.2:c.1321G>A	p.Val441Ile	p.V441I	ENST00000275493	NM_005228.3	441	Gtc/Atc																																																																															
BRAF	673	MSKCC	GRCh37	7	140501333	140501333	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	308	210	0	ENST00000288602.6:c.739T>C	p.Phe247Leu	p.F247L	ENST00000288602	NM_004333.4	247	Ttt/Ctt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485812	8485812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	130	382	0	ENST00000356435.5:c.3005C>T	p.Pro1002Leu	p.P1002L	ENST00000356435		1002	cCc/cTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044699	47044699	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0017596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	749	284	0	ENST00000329236.7:c.1867-2A>T		p.X623_splice	ENST00000329236	NM_001204466.1	623																																																																																
TP53	7157	MSKCC	GRCh37	17	7579358	7579359	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	A			P-0017596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	252	406	0	ENST00000269305.4:c.328_329delCGinsT	p.Arg110PhefsTer13	p.R110Ffs*13	ENST00000269305	NM_001126112.2	110	CGt/Tt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	128	621	0	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061636	38061644	+	inframe_deletion	In_Frame_Del	DEL	GCACCCATG	GCACCCATG	-			P-0017603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	41	179	0	ENST00000250448.2:c.345_353delCATGGGTGC	p.Met116_Ala118del	p.M116_A118del	ENST00000250448	NM_004496.3	115	gcCATGGGTGCg/gcg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0017604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	119	178	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088787	27088788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	115	635	0	ENST00000324856.7:c.2402dupG	p.Gln802SerfsTer15	p.Q802Sfs*15	ENST00000324856	NM_006015.4	799	cag/caGg																																																																															
AKT1	207	MSKCC	GRCh37	14	105237122	105237124	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0017604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	99	708	0	ENST00000349310.3:c.1321_1323delGAG	p.Glu441del	p.E441del	ENST00000349310	NM_001014432.1	441	GAG/-																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925546	114925546	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1635	198	1097	0	ENST00000543371.1:c.1624G>T	p.Glu542Ter	p.E542*	ENST00000543371	NM_001198531.1	542	Gag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32968878	32968878	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	96	405	0	ENST00000380152.3:c.9311delA	p.Lys3104SerfsTer4	p.K3104Sfs*4	ENST00000380152		3103	atA/at																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932666	39932666	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1118	186	940	1	ENST00000378444.4:c.1933G>C	p.Ala645Pro	p.A645P	ENST00000378444	NM_001123385.1	645	Gca/Cca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519975		P-0017605-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	265	430	0	ENST00000269305.4:c.403T>C	p.Cys135Arg	p.C135R	ENST00000269305	NM_001126112.2	135	Tgc/Cgc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911387	32911387	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017605-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	421	920	0	ENST00000380152.3:c.2895G>T	p.Met965Ile	p.M965I	ENST00000380152		965	atG/atT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	107	373	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MAX	4149	MSKCC	GRCh37	14	65560477	65560477	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	196	445	0	ENST00000358664.4:c.120delA	p.Asp41ThrfsTer24	p.D41Tfs*24	ENST00000358664	NM_002382.4	40	aaA/aa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88726687	88726687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	75	393	0	ENST00000360948.2:c.357G>T	p.Gln119His	p.Q119H	ENST00000360948	NM_001012338.2	119	caG/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	81	270	0	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
CDC73	79577	MSKCC	GRCh37	1	193111037	193111038	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	56	263	2	ENST00000367435.3:c.570_571delGGinsTT	p.MetAla190IleSer	p.MA190IS	ENST00000367435	NM_024529.4	190	atGGct/atTTct																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857624	9857624	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	101	359	0	ENST00000330684.3:c.3777C>A	p.Asn1259Lys	p.N1259K	ENST00000330684	NM_001134407.1	1259	aaC/aaA																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032027	10032027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1439	215	653	0	ENST00000330684.3:c.796G>A	p.Glu266Lys	p.E266K	ENST00000330684	NM_001134407.1	266	Gag/Aag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89806495	89806495	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	112	405	0	ENST00000389301.3:c.3841C>A	p.Leu1281Met	p.L1281M	ENST00000389301	NM_000135.2	1281	Ctg/Atg																																																																															
NF1	4763	MSKCC	GRCh37	17	29652837	29652837	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	89	255	1	ENST00000358273.4:c.4836-1G>T		p.X1612_splice	ENST00000358273	NM_001042492.2	1612																																																																																
PPM1D	8493	MSKCC	GRCh37	17	58740710	58740710	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1852	318	844	2	ENST00000305921.3:c.1615G>T	p.Glu539Ter	p.E539*	ENST00000305921	NM_003620.3	539	Gaa/Taa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528641	89528641	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	98	245	0	ENST00000336596.2:c.2941G>T	p.Val981Phe	p.V981F	ENST00000336596	NM_005233.5	981	Gtt/Ttt																																																																															
TET2	54790	MSKCC	GRCh37	4	106196937	106196937	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	143	401	0	ENST00000380013.4:c.5270A>T	p.His1757Leu	p.H1757L	ENST00000380013	NM_001127208.2	1757	cAt/cTt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931762	39931762	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1370	221	686	0	ENST00000378444.4:c.2837A>T	p.Glu946Val	p.E946V	ENST00000378444	NM_001123385.1	946	gAg/gTg																																																																															
AR	367	MSKCC	GRCh37	X	66765707	66765707	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1670	113	757	0	ENST00000374690.3:c.719G>C	p.Cys240Ser	p.C240S	ENST00000374690	NM_000044.3	240	tGt/tCt																																																																															
ATRX	546	MSKCC	GRCh37	X	76938671	76938671	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1147	78	494	0	ENST00000373344.5:c.2077G>T	p.Val693Phe	p.V693F	ENST00000373344	NM_000489.3	693	Gtt/Ttt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0017607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	86	308	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0017607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	125	469	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47059200	47059201	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTCA			P-0017607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	69	327	0	ENST00000409792.3:c.7457_7460dup	p.Pro2488GlufsTer7	p.P2488Efs*7	ENST00000409792	NM_014159.6	2487	aac/aaTGAAc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45394763	45394779	+	frameshift_variant	Frame_Shift_Del	DEL	AGTCATCCAGAGGCGGA	AGTCATCCAGAGGCGGA	-			P-0017607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	38	218	0	ENST00000262160.6:c.570_586delTCCGCCTCTGGATGACT	p.Pro191TyrfsTer9	p.P191Yfs*9	ENST00000262160	NM_005901.5	190	ctTCCGCCTCTGGATGACTat/ctat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47127768	47127768	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	108	306	0	ENST00000409792.3:c.5314G>T	p.Glu1772Ter	p.E1772*	ENST00000409792	NM_014159.6	1772	Gaa/Taa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467706	50467706	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	158	449	0	ENST00000331340.3:c.941C>G	p.Ala314Gly	p.A314G	ENST00000331340	NM_006060.4	314	gCc/gGc																																																																															
MYC	4609	MSKCC	GRCh37	8	128750866	128750866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	283	591	0	ENST00000377970.2:c.403G>A	p.Asp135Asn	p.D135N	ENST00000377970	NM_002467.4	135	Gac/Aac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711883	89711884	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0017612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	157	385	0	ENST00000371953.3:c.502_503delAT	p.Ile168SerfsTer11	p.I168Sfs*11	ENST00000371953	NM_000314.4	167	acTAtt/actt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457283	67457285	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0017612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	182	493	0	ENST00000327367.4:c.259_261delATC	p.Ile87del	p.I87del	ENST00000327367	NM_005902.3	86	gTCAtc/gtc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270593	98270595	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0017613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	11	79	0	ENST00000331920.6:c.49_51delGGC	p.Gly17del	p.G17del	ENST00000331920	NM_000264.3	17	GGC/-																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182641	38182641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	93	484	0	ENST00000396334.3:c.794T>C	p.Leu265Pro	p.L265P	ENST00000396334	NM_002468.4	265	cTg/cCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0017614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	175	254	1	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892272	9892272	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	316	427	0	ENST00000330684.3:c.2218G>T	p.Gly740Trp	p.G740W	ENST00000330684	NM_001134407.1	740	Ggg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0017615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	288	344	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
CDK12	51755	MSKCC	GRCh37	17	37673771	37673772	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAGC			P-0017615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	294	469	0	ENST00000447079.4:c.2928_2931dup	p.Tyr978AlafsTer19	p.Y978Afs*19	ENST00000447079	NM_015083.1	975	-/AAGC																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	203	454	1	ENST00000206249.3:c.1607T>A	p.Leu536His	p.L536H	ENST00000206249	NM_000125.3	536	cTc/cAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115956	8115956	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	127	319	0	ENST00000346208.3:c.1305delC	p.Ser436ProfsTer39	p.S436Pfs*39	ENST00000346208		434	caC/ca																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577439	64577440	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0017616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	212	828	0	ENST00000337652.1:c.142_143delCT	p.Leu48GlyfsTer68	p.L48Gfs*68	ENST00000337652	NM_130803.2	48	CTg/g																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016562	12016562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	114	459	0	ENST00000353533.5:c.698C>T	p.Ser233Phe	p.S233F	ENST00000353533	NM_003010.3	233	tCc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	138	401	3	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	215	418	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41408891	41408891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	172	550	0	ENST00000373198.4:c.535G>T	p.Val179Leu	p.V179L	ENST00000373198	NM_133170.3	179	Gtg/Ttg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67198946	67198946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	249	445	0	ENST00000312629.5:c.417G>T	p.Gln139His	p.Q139H	ENST00000312629	NM_003952.2	139	caG/caT																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56480324	56480324	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	128	410	0	ENST00000267101.3:c.431C>A	p.Ser144Ter	p.S144*	ENST00000267101	NM_001982.3	144	tCa/tAa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422157	81422157	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	59	425	0	ENST00000298171.2:c.133C>G	p.Gln45Glu	p.Q45E	ENST00000298171	NM_000369.2	45	Caa/Gaa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610476	81610476	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	180	618	0	ENST00000298171.2:c.2074C>A	p.Leu692Ile	p.L692I	ENST00000298171	NM_000369.2	692	Cta/Ata																																																																															
AKT1	207	MSKCC	GRCh37	14	105239420	105239420	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	146	443	0	ENST00000349310.3:c.967G>C	p.Asp323His	p.D323H	ENST00000349310	NM_001014432.1	323	Gac/Cac																																																																															
TET2	54790	MSKCC	GRCh37	4	106156095	106156095	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	214	525	0	ENST00000380013.4:c.998delC	p.Pro333HisfsTer14	p.P333Hfs*14	ENST00000380013	NM_001127208.2	332	tgC/tg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675502	30675502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1162	68	653	0	ENST00000376406.3:c.2854G>A	p.Glu952Lys	p.E952K	ENST00000376406	NM_014641.2	952	Gag/Aag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675513	30675513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	79	704	1	ENST00000376406.3:c.2843G>A	p.Arg948Lys	p.R948K	ENST00000376406	NM_014641.2	948	aGa/aAa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675733	30675733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1550	94	740	1	ENST00000376406.3:c.2623G>A	p.Asp875Asn	p.D875N	ENST00000376406	NM_014641.2	875	Gac/Aac																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675739	30675739	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1630	99	762	0	ENST00000376406.3:c.2617G>C	p.Glu873Gln	p.E873Q	ENST00000376406	NM_014641.2	873	Gaa/Caa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527763	157527764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	79	329	0	ENST00000346085.5:c.5490dup	p.Gln1831SerfsTer5	p.Q1831Sfs*5	ENST00000346085	NM_020732.3	1830	att/aTtt																																																																															
HGF	3082	MSKCC	GRCh37	7	81372685	81372685	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	166	503	1	ENST00000222390.5:c.849T>A	p.Cys283Ter	p.C283*	ENST00000222390	NM_000601.4	283	tgT/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	170	408	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0017621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	114	294	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112177094	112177095	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0017621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	69	513	0	ENST00000257430.4:c.5803_5804delCA	p.Gln1935ValfsTer13	p.Q1935Vfs*13	ENST00000257430	NM_000038.5	1935	CAg/g																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0017623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	78	330	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0017623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	417	680	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117311	115117311	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0017623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	412	550	0	ENST00000257566.3:c.863delA	p.Lys288ArgfsTer2	p.K288Rfs*2	ENST00000257566	NM_016569.3	288	aAg/ag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16052795	16052795	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	40	333	0	ENST00000268712.3:c.879del	p.Phe293LeufsTer33	p.F293Lfs*33	ENST00000268712	NM_006311.3	293	ttT/tt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100621	8100622	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	172	730	0	ENST00000346208.3:c.598dup	p.His200ProfsTer103	p.H200Pfs*103	ENST00000346208		199	tcc/tCcc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115111990	115111990	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	55	307	0	ENST00000257566.3:c.1750C>T	p.Gln584Ter	p.Q584*	ENST00000257566	NM_016569.3	584	Cag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29587511	29587511	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	153	358	0	ENST00000358273.4:c.4557delG	p.Gln1520SerfsTer54	p.Q1520Sfs*54	ENST00000358273	NM_001042492.2	1519	Ggg/gg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252972	36252974	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0017623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	627	361	1	ENST00000300305.3:c.388_390delGTC	p.Val130del	p.V130del	ENST00000300305		130	GTC/-																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56174833	56174849	+	frameshift_variant	Frame_Shift_Del	DEL	TACTCCTTGCCACAGTT	TACTCCTTGCCACAGTT	-			P-0017623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	264	543	0	ENST00000399503.3:c.1994_2010delCTCCTTGCCACAGTTTA	p.Thr665SerfsTer26	p.T665Sfs*26	ENST00000399503	NM_005921.1	664	taTACTCCTTGCCACAGTTta/tata																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017626-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	134	331	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017626-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	145	374	0	ENST00000269305.4:c.475del	p.Ala159ProfsTer11	p.A159Pfs*11	ENST00000269305	NM_001126112.2	159	Gcc/cc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638185	176638185	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017626-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	51	324	0	ENST00000439151.2:c.2785A>G	p.Thr929Ala	p.T929A	ENST00000439151	NM_022455.4	929	Act/Gct																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206938	162206938	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0017626-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	21	203	0	ENST00000366898.1:c.737G>T	p.Ser246Ile	p.S246I	ENST00000366898	NM_004562.2	246	aGc/aTc																																																																															
SMO	6608	MSKCC	GRCh37	7	128851600	128851600	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017626-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	78	410	0	ENST00000249373.3:c.1925T>G	p.Val642Gly	p.V642G	ENST00000249373	NM_005631.4	642	gTg/gGg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495796	56495796	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	100	296	0	ENST00000267101.3:c.3986G>A	p.Trp1329Ter	p.W1329*	ENST00000267101	NM_001982.3	1329	tGg/tAg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048253	180048253	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0017627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	90	327	0	ENST00000261937.6:c.2021-1G>T		p.X674_splice	ENST00000261937	NM_182925.4	674																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242466	55242487	+	protein_altering_variant	In_Frame_Del	DEL	GAATTAAGAGAAGCAACATCTC	GAATTAAGAGAAGCAACATCTC	CTCT			P-0017627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	155	330	1	ENST00000275493.2:c.2236_2257delGAATTAAGAGAAGCAACATCTCinsCTCT	p.Glu746_Pro753delinsLeuSer	p.E746_P753delinsLS	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCAACATCTCcg/CTCTcg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740325	145740328	+	frameshift_variant	Frame_Shift_Del	DEL	CATC	CATC	-			P-0017627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			996	87	352	0	ENST00000428558.2:c.1612_1615delGATG	p.Asp538ThrfsTer19	p.D538Tfs*19	ENST00000428558	NM_004260.3	538	GATGac/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	405	451	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0017628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	372	451	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2104298	2104298	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0017628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	337	370	0	ENST00000219476.3:c.338G>A	p.Gly113Asp	p.G113D	ENST00000219476	NM_000548.3	113	gGc/gAc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99172166	99172166	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	420	654	0	ENST00000074304.5:c.1732A>G	p.Ser578Gly	p.S578G	ENST00000074304	NM_001134224.1	578	Agc/Ggc																																																																															
ATR	545	MSKCC	GRCh37	3	142180781	142180781	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0017628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	191	353	0	ENST00000350721.4:c.7192+1G>A		p.X2398_splice	ENST00000350721	NM_001184.3	2398																																																																																
TP63	8626	MSKCC	GRCh37	3	189456558	189456558	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	311	324	0	ENST00000264731.3:c.319A>G	p.Met107Val	p.M107V	ENST00000264731	NM_003722.4	107	Atg/Gtg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518254	187518254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	87	161	0	ENST00000441802.2:c.12440G>T	p.Gly4147Val	p.G4147V	ENST00000441802	NM_005245.3	4147	gGc/gTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	124	470	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ATM	472	MSKCC	GRCh37	11	108153485	108153485	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	75	355	0	ENST00000278616.4:c.3627del	p.Phe1209LeufsTer6	p.F1209Lfs*6	ENST00000278616	NM_000051.3	1209	Ttt/tt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221320	1221320	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	81	539	0	ENST00000326873.7:c.843delG	p.Leu282SerfsTer5	p.L282Sfs*5	ENST00000326873	NM_000455.4	281	ccG/cc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862837	9862837	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	92	638	1	ENST00000330684.3:c.2466C>A	p.Tyr822Ter	p.Y822*	ENST00000330684	NM_001134407.1	822	taC/taA																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619360	37619360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	15	190	0	ENST00000447079.4:c.1036C>T	p.Pro346Ser	p.P346S	ENST00000447079	NM_015083.1	346	Cca/Tca																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2191141	2191141	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1289	120	863	0	ENST00000398665.3:c.395C>G	p.Ser132Cys	p.S132C	ENST00000398665	NM_032482.2	132	tCc/tGc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610288	10610288	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	94	745	1	ENST00000171111.5:c.422A>T	p.Tyr141Phe	p.Y141F	ENST00000171111	NM_203500.1	141	tAc/tTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288486	15288486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	32	395	0	ENST00000263388.2:c.4253C>T	p.Ser1418Leu	p.S1418L	ENST00000263388	NM_000435.2	1418	tCg/tTg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910756	29910756	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	101	523	0	ENST00000376809.5:c.296G>C	p.Arg99Pro	p.R99P	ENST00000376809	NM_002116.7	99	cGa/cCa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44948987	44948987	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0017637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	12	134	0	ENST00000377967.4:c.3549-1G>C		p.X1183_splice	ENST00000377967	NM_021140.2	1183																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	241	400	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	148	356	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
MED12	9968	MSKCC	GRCh37	X	70351933	70351933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	216	646	1	ENST00000374080.3:c.4130C>T	p.Ser1377Phe	p.S1377F	ENST00000374080		1377	tCc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	711	408	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78899272	78899272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	50	296	0	ENST00000306801.3:c.2911G>A	p.Val971Ile	p.V971I	ENST00000306801	NM_020761.2	971	Gtc/Atc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118931	70118932	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1254	113	659	0	ENST00000245479.2:c.505dup	p.His169ProfsTer83	p.H169Pfs*83	ENST00000245479	NM_000346.3	168	gac/gaCc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12641197	12641197	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1253	188	672	0	ENST00000251849.4:c.1101delA	p.Lys367AsnfsTer8	p.K367Nfs*8	ENST00000251849	NM_002880.3	367	aaA/aa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971119	+	frameshift_variant	Frame_Shift_Del	DEL	GGTC	GGTC	-			P-0017654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	83	224	0	ENST00000304494.5:c.239_242delGACC	p.Arg80ProfsTer65	p.R80Pfs*65	ENST00000304494	NM_000077.4	80	cGACCc/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0017655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	216	384	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0017655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	57	199	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0017655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	285	561	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0017655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	80	304	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923086	39923087	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	249	414	0	ENST00000378444.4:c.3621dup	p.Gln1208ThrfsTer8	p.Q1208Tfs*8	ENST00000378444	NM_001123385.1	1207	-/A																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	261	463	1	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212104	5212104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	110	484	0	ENST00000357368.4:c.4927G>A	p.Glu1643Lys	p.E1643K	ENST00000357368	NM_002850.3	1643	Gag/Aag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93953255	93953255	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	156	654	0	ENST00000369303.4:c.2886T>A	p.Asp962Glu	p.D962E	ENST00000369303	NM_004440.3	962	gaT/gaA																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929077	44929077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	204	350	1	ENST00000377967.4:c.2177C>T	p.Thr726Met	p.T726M	ENST00000377967	NM_021140.2	726	aCg/aTg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375050	45375053	+	stop_gained	Nonsense_Mutation	ONP	GCTG	GCTG	ACTA			P-0017655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	57	231	0	ENST00000262160.6:c.790_793delCAGCinsTAGT	p.GlnPro264TerSer	p.QP264*S	ENST00000262160	NM_005901.5	264	CAGCca/TAGTca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	128	433	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	201	786	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023855	27023855	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	109	314	0	ENST00000324856.7:c.961C>T	p.Gln321Ter	p.Q321*	ENST00000324856	NM_006015.4	321	Cag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971104	21971105	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0017660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	61	263	0	ENST00000304494.5:c.253_254delGC	p.Ala85CysfsTer34	p.A85Cfs*34	ENST00000304494	NM_000077.4	85	GCt/t																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0017661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	196	478	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0017661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	188	291	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0017661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	103	413	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710663	114710666	+	frameshift_variant	Frame_Shift_Del	DEL	AATG	AATG	-			P-0017661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	247	785	0	ENST00000543371.1:c.151_154delGAAT	p.Glu51GlnfsTer56	p.E51Qfs*56	ENST00000543371	NM_001198531.1	50	AATGaa/aa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109750	115109750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	223	560	0	ENST00000257566.3:c.2128C>T	p.Leu710Phe	p.L710F	ENST00000257566	NM_016569.3	710	Ctc/Ttc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604740	48604740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	200	416	1	ENST00000342988.3:c.1562C>T	p.Thr521Ile	p.T521I	ENST00000342988	NM_005359.5	521	aCa/aTa																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792844	33792844	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	70	275	0	ENST00000498907.2:c.477delG	p.Ile160SerfsTer158	p.I160Sfs*158	ENST00000498907	NM_004364.3	159	gtG/gt																																																																															
ALK	238	MSKCC	GRCh37	2	29450500	29450500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	239	599	0	ENST00000389048.3:c.2854G>A	p.Gly952Arg	p.G952R	ENST00000389048	NM_004304.4	952	Ggg/Agg																																																																															
KDR	3791	MSKCC	GRCh37	4	55955129	55955129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	75	403	0	ENST00000263923.4:c.3416T>C	p.Met1139Thr	p.M1139T	ENST00000263923	NM_002253.2	1139	aTg/aCg																																																																															
KDR	3791	MSKCC	GRCh37	4	55971127	55971127	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	127	305	0	ENST00000263923.4:c.1670C>A	p.Pro557His	p.P557H	ENST00000263923	NM_002253.2	557	cCt/cAt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0017662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	47	596	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
KDR	3791	MSKCC	GRCh37	4	55964890	55964890	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	23	534	0	ENST00000263923.4:c.2347G>T	p.Val783Phe	p.V783F	ENST00000263923	NM_002253.2	783	Gtc/Ttc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149433943	149433943	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	44	624	0	ENST00000286301.3:c.2705C>T	p.Thr902Ile	p.T902I	ENST00000286301	NM_005211.3	902	aCc/aTc																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0017663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	128	246	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																															
JAK3	3718	MSKCC	GRCh37	19	17954270	17954270	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	146	900	0	ENST00000458235.1:c.339G>C	p.Glu113Asp	p.E113D	ENST00000458235	NM_000215.3	113	gaG/gaC																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143029245	143029245	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0017663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	40	277	0	ENST00000262992.4:c.2374+1G>T		p.X792_splice	ENST00000262992	NM_001101669.1	792																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27105793	27105793	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	81	382	1	ENST00000324856.7:c.5404G>T	p.Glu1802Ter	p.E1802*	ENST00000324856	NM_006015.4	1802	Gag/Tag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144110	55144110	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	94	408	0	ENST00000257290.5:c.1939A>G	p.Ile647Val	p.I647V	ENST00000257290	NM_006206.4	647	Ata/Gta																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370856	55370856	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	87	245	0	ENST00000297316.4:c.158G>C	p.Gly53Ala	p.G53A	ENST00000297316	NM_022454.3	53	gGa/gCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	37	437	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0017672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	92	351	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0017672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	33	295	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0017672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	63	231	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391076	89391076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	95	575	0	ENST00000336596.2:c.1142G>A	p.Arg381His	p.R381H	ENST00000336596	NM_005233.5	381	cGc/cAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1184	315	1179	1	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527977	157527978	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	53	219	0	ENST00000346085.5:c.5703dup	p.Lys1902Ter	p.K1902*	ENST00000346085	NM_020732.3	1901	agt/agTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0017673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1109	134	848	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0017679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	252	826	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880219	37880220	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC			P-0017679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	371	684	1	ENST00000269571.5:c.2263_2264delTTinsCC	p.Leu755Pro	p.L755P	ENST00000269571		755	TTg/CCg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131403	17131403	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	153	466	0	ENST00000285071.4:c.49delC	p.Arg17AlafsTer38	p.R17Afs*38	ENST00000285071	NM_144997.5	17	Cgc/gc																																																																															
CIC	23152	MSKCC	GRCh37	19	42793165	42793165	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	404	668	1	ENST00000575354.2:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000575354	NM_015125.3	353	Cga/Tga																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027031	48027031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	129	347	0	ENST00000234420.5:c.1909C>T	p.Leu637Phe	p.L637F	ENST00000234420	NM_000179.2	637	Ctc/Ttc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624801	9624801	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	293	396	2	ENST00000353224.5:c.176T>A	p.Ile59Asn	p.I59N	ENST00000353224	NM_177990.2	59	aTc/aAc																																																																															
AR	367	MSKCC	GRCh37	X	66765139	66765139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	52	340	0	ENST00000374690.3:c.151G>A	p.Gly51Ser	p.G51S	ENST00000374690	NM_000044.3	51	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0017686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	110	597	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0017686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	265	664	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881049	37881049	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766958268		P-0017686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	263	629	1	ENST00000269571.5:c.2378C>T	p.Thr793Met	p.T793M	ENST00000269571		793	aCg/aTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68847225	68847225	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782798		P-0017694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	63	455	0	ENST00000261769.5:c.1147C>T	p.Gln383Ter	p.Q383*	ENST00000261769	NM_004360.3	383	Cag/Tag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52621398	52621398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1156	77	451	0	ENST00000394830.3:c.3019C>G	p.Leu1007Val	p.L1007V	ENST00000394830	NM_018313.4	1007	Cta/Gta																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101402	27101402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	102	497	2	ENST00000324856.7:c.4689del	p.Met1564Ter	p.M1564*	ENST00000324856	NM_006015.4	1562	Ccc/cc																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	95	446	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	100	480	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	131	616	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	159	721	2	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325924	65325924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	99	520	0	ENST00000342505.4:c.1198G>A	p.Glu400Lys	p.E400K	ENST00000342505	NM_002227.2	400	Gag/Aag																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025982	1025982	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	76	446	0	ENST00000358495.3:c.548C>A	p.Pro183His	p.P183H	ENST00000358495	NM_134424.2	183	cCt/cAt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	86	833	1	ENST00000261937.6:c.1267dupC	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175857	24175859	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	75	648	0	ENST00000263121.7:c.1091_1093del	p.Lys364del	p.K364del	ENST00000263121	NM_003073.3	362	gAGAag/gag																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475061	40475063	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	124	699	0	ENST00000264657.5:c.1847_1849del	p.Glu616del	p.E616del	ENST00000264657	NM_139276.2	616	gAAGga/gga																																																																															
CIC	23152	MSKCC	GRCh37	19	42799098	42799098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	101	842	1	ENST00000575354.2:c.4586delC	p.Pro1529LeufsTer91	p.P1529Lfs*91	ENST00000575354	NM_015125.3	1528	Ccc/cc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260214	16260214	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	61	381	0	ENST00000375759.3:c.7484delC	p.Pro2495LeufsTer4	p.P2495Lfs*4	ENST00000375759	NM_015001.2	2493	agC/ag																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	78	503	6	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
B2M	567	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	63	221	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
CASP8	841	MSKCC	GRCh37	2	202141632	202141632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	148	664	0	ENST00000358485.4:c.920G>A	p.Arg307Gln	p.R307Q	ENST00000358485	NM_001080125.1	307	cGg/cAg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257102	19257102	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	71	649	0	ENST00000162023.5:c.861delC	p.Ala288ProfsTer?	p.A288Pfs*?	ENST00000162023		287	ccC/cc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41239933	41239933	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	13	92	1	ENST00000379561.5:c.417delC	p.Ala140ProfsTer193	p.A140Pfs*193	ENST00000379561	NM_002015.3	139	ccC/cc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	89	666	1	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588173	69588173	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	93	682	0	ENST00000168712.1:c.525delC	p.Gly176AlafsTer6	p.G176Afs*6	ENST00000168712	NM_002007.2	175	ccC/cc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17954604	17954604	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	108	870	0	ENST00000458235.1:c.290T>C	p.Val97Ala	p.V97A	ENST00000458235	NM_000215.3	97	gTc/gCc																																																																															
ATM	472	MSKCC	GRCh37	11	108206575	108206575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138526014		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	88	405	0	ENST00000278616.4:c.8155C>T	p.Arg2719Cys	p.R2719C	ENST00000278616	NM_000051.3	2719	Cgt/Tgt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	82	658	2	ENST00000245479.2:c.916delG	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																															
YES1	7525	MSKCC	GRCh37	18	745962	745963	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	109	627	0	ENST00000314574.4:c.559_560delAG	p.Ser187Ter	p.S187*	ENST00000314574	NM_005433.3	187	AGt/t																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991709	72991711	+	inframe_deletion	In_Frame_Del	DEL	GCA	GCA	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	46	346	1	ENST00000268489.5:c.2334_2336delTGC	p.Ala784del	p.A784del	ENST00000268489	NM_006885.3	778	gcTGCg/gcg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885550	111885550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	87	682	3	ENST00000341259.2:c.1327C>T	p.Arg443Cys	p.R443C	ENST00000341259	NM_005475.2	443	Cgc/Tgc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741406	17741406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	125	976	2	ENST00000250003.3:c.77C>T	p.Thr26Met	p.T26M	ENST00000250003	NM_002478.4	26	aCg/aTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	92	627	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939260	71939260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	92	734	1	ENST00000298229.2:c.209G>A	p.Arg70His	p.R70H	ENST00000298229	NM_001567.3	70	cGc/cAc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	107	603	1	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091782	29091782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	113	739	1	ENST00000328354.6:c.1175C>T	p.Ala392Val	p.A392V	ENST00000328354	NM_007194.3	392	gCg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777990	3777990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	157	1092	0	ENST00000262367.5:c.7058G>A	p.Arg2353Gln	p.R2353Q	ENST00000262367	NM_004380.2	2353	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	126	905	2	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
SDHB	6390	MSKCC	GRCh37	1	17349192	17349192	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	78	536	0	ENST00000375499.3:c.676T>G	p.Phe226Val	p.F226V	ENST00000375499	NM_003000.2	226	Ttc/Gtc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101068	27101068	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	117	807	1	ENST00000324856.7:c.4354delC	p.Gln1452ArgfsTer29	p.Q1452Rfs*29	ENST00000324856	NM_006015.4	1450	ggC/gg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106459	27106459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	116	636	0	ENST00000324856.7:c.6070C>T	p.Arg2024Trp	p.R2024W	ENST00000324856	NM_006015.4	2024	Cgg/Tgg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115251276	115251276	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	54	400	0	ENST00000369535.4:c.451-1G>T		p.X151_splice	ENST00000369535	NM_002524.4	151																																																																																
FH	2271	MSKCC	GRCh37	1	241669439	241669439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	97	426	0	ENST00000366560.3:c.768delA	p.Lys256AsnfsTer4	p.K256Nfs*4	ENST00000366560	NM_000143.3	256	aaA/aa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097650	8097650	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	30	318	0	ENST00000346208.3:c.32T>C	p.Val11Ala	p.V11A	ENST00000346208		11	gTg/gCg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936099	71936099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	41	165	1	ENST00000298229.2:c.71G>A	p.Arg24His	p.R24H	ENST00000298229	NM_001567.3	24	cGc/cAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948208	71948209	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	117	1010	3	ENST00000298229.2:c.2927dupC	p.Pro977ThrfsTer7	p.P977Tfs*7	ENST00000298229	NM_001567.3	974	gcc/gCcc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307537	118307537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	131	798	1	ENST00000534358.1:c.310G>A	p.Ala104Thr	p.A104T	ENST00000534358	NM_005933.3	104	Gcc/Acc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118360525	118360525	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	119	567	0	ENST00000534358.1:c.4498A>G	p.Lys1500Glu	p.K1500E	ENST00000534358	NM_005933.3	1500	Aag/Gag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421586	49421586	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	99	505	0	ENST00000301067.7:c.14643G>T	p.Gln4881His	p.Q4881H	ENST00000301067	NM_003482.3	4881	caG/caT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49422910	49422910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	224	684	4	ENST00000301067.7:c.14185C>T	p.Arg4729Trp	p.R4729W	ENST00000301067	NM_003482.3	4729	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	137	801	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858943	57858943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	117	720	1	ENST00000228682.2:c.439C>T	p.Pro147Ser	p.P147S	ENST00000228682	NM_005269.2	147	Cct/Tct																																																																															
LATS2	26524	MSKCC	GRCh37	13	21553853	21553853	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs181062581		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	122	707	0	ENST00000382592.4:c.2749A>G	p.Thr917Ala	p.T917A	ENST00000382592	NM_014572.2	917	Act/Gct																																																																															
FLT1	2321	MSKCC	GRCh37	13	28959074	28959074	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	113	509	1	ENST00000282397.4:c.2064delC	p.Glu689SerfsTer21	p.E689Sfs*21	ENST00000282397	NM_002019.4	688	ccC/cc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95595947	95595947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	116	562	0	ENST00000343455.3:c.596G>A	p.Cys199Tyr	p.C199Y	ENST00000343455	NM_177438.2	199	tGt/tAt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	359972	359972	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	88	607	2	ENST00000262320.3:c.1116+1G>A		p.X372_splice	ENST00000262320	NM_003502.3	372																																																																																
NTHL1	4913	MSKCC	GRCh37	16	2096132	2096133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs763525759		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	92	657	3	ENST00000219066.1:c.374dup	p.Val127GlyfsTer43	p.V127Gfs*43	ENST00000219066	NM_002528.5	125	cca/ccCa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225603	2225603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	93	680	0	ENST00000326181.6:c.1606G>T	p.Gly536Cys	p.G536C	ENST00000326181	NM_032271.2	536	Ggc/Tgc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15971381	15971381	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	154	663	0	ENST00000268712.3:c.4568delC	p.Pro1523LeufsTer20	p.P1523Lfs*20	ENST00000268712	NM_006311.3	1523	cCt/ct																																																																															
NF1	4763	MSKCC	GRCh37	17	29550566	29550566	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	113	471	0	ENST00000358273.4:c.1826A>T	p.Lys609Ile	p.K609I	ENST00000358273	NM_001042492.2	609	aAa/aTa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868595	37868595	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	75	554	0	ENST00000269571.5:c.1042G>C	p.Glu348Gln	p.E348Q	ENST00000269571		348	Gag/Cag																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370173	40370173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	95	763	0	ENST00000293328.3:c.1165C>T	p.Arg389Cys	p.R389C	ENST00000293328	NM_012448.3	389	Cgc/Tgc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448271	56448271	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	247	594	0	ENST00000407977.2:c.375+1G>A		p.X125_splice	ENST00000407977		125																																																																																
DOT1L	84444	MSKCC	GRCh37	19	2216482	2216482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	104	722	5	ENST00000398665.3:c.2126C>T	p.Pro709Leu	p.P709L	ENST00000398665	NM_032482.2	709	cCg/cTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212166	5212166	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775731386		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	88	777	0	ENST00000357368.4:c.4865C>T	p.Thr1622Met	p.T1622M	ENST00000357368	NM_002850.3	1622	aCg/aTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223120	5223120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	94	889	1	ENST00000357368.4:c.2683G>A	p.Val895Met	p.V895M	ENST00000357368	NM_002850.3	895	Gtg/Atg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5286135	5286135	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	72	687	1	ENST00000357368.4:c.17delG	p.Gly6AlafsTer59	p.G6Afs*59	ENST00000357368	NM_002850.3	6	gGc/gc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144491	11144491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	108	746	2	ENST00000344626.4:c.3823G>A	p.Ala1275Thr	p.A1275T	ENST00000344626	NM_003072.3	1275	Gcc/Acc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350041	15350041	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	123	830	0	ENST00000263377.2:c.3611G>C	p.Ser1204Thr	p.S1204T	ENST00000263377	NM_058243.2	1204	aGc/aCc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353959	15353959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	25	222	1	ENST00000263377.2:c.2921C>T	p.Pro974Leu	p.P974L	ENST00000263377	NM_058243.2	974	cCg/cTg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18964138	18964138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	112	610	0	ENST00000262803.5:c.1135C>A	p.His379Asn	p.H379N	ENST00000262803	NM_002911.3	379	Cac/Aac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219934	36219934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	79	633	3	ENST00000222270.7:c.4736G>A	p.Arg1579His	p.R1579H	ENST00000222270	NM_014727.1	1579	cGt/cAt																																																																															
AXL	558	MSKCC	GRCh37	19	41745213	41745213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	85	554	2	ENST00000301178.4:c.1279C>T	p.Arg427Cys	p.R427C	ENST00000301178	NM_021913.4	427	Cgc/Tgc																																																																															
ERF	2077	MSKCC	GRCh37	19	42754588	42754589	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	92	749	0	ENST00000222329.4:c.151dup	p.Asp51GlyfsTer11	p.D51Gfs*11	ENST00000222329	NM_006494.2	51	gac/gGac																																																																															
BBC3	27113	MSKCC	GRCh37	19	47731468	47731468	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	29	177	0	ENST00000449228.1:c.324delG	p.Phe109SerfsTer120	p.F109Sfs*120	ENST00000449228	NM_001127240.2	108	ggG/gg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967087	25967087	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	80	468	0	ENST00000435504.4:c.2119G>T	p.Gly707Trp	p.G707W	ENST00000435504		707	Ggg/Tgg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702211	47702211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	115	622	0	ENST00000233146.2:c.1807G>A	p.Asp603Asn	p.D603N	ENST00000233146	NM_000251.2	603	Gat/Aat																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128044449	128044449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201840181		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	107	621	1	ENST00000285398.2:c.1172G>A	p.Arg391Gln	p.R391Q	ENST00000285398	NM_000122.1	391	cGg/cAg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426801	212426801	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	106	527	0	ENST00000342788.4:c.2314A>G	p.Met772Val	p.M772V	ENST00000342788	NM_005235.2	772	Atg/Gtg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31386361	31386361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	79	570	1	ENST00000328111.2:c.1586C>T	p.Pro529Leu	p.P529L	ENST00000328111	NM_006892.3	529	cCg/cTg																																																																															
SRC	6714	MSKCC	GRCh37	20	36026126	36026126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	54	800	1	ENST00000358208.4:c.728G>A	p.Arg243His	p.R243H	ENST00000358208		243	cGc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790090	40790090	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	78	593	0	ENST00000373198.4:c.2641delC	p.Arg881GlyfsTer20	p.R881Gfs*20	ENST00000373198	NM_133170.3	881	Cgg/gg																																																																															
ERG	2078	MSKCC	GRCh37	21	39817486	39817486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	108	636	2	ENST00000288319.7:c.77C>A	p.Pro26Gln	p.P26Q	ENST00000288319	NM_182918.3	26	cCa/cAa																																																																															
RAC2	5880	MSKCC	GRCh37	22	37628864	37628864	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151307781		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	98	738	0	ENST00000249071.6:c.202C>T	p.Arg68Trp	p.R68W	ENST00000249071	NM_002872.4	68	Cgg/Tgg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936019	49936019	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	140	782	0	ENST00000296474.3:c.1651A>G	p.Met551Val	p.M551V	ENST00000296474	NM_002447.2	551	Atg/Gtg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807480	1807480	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	33	664	0	ENST00000260795.2:c.1649C>A	p.Pro550His	p.P550H	ENST00000260795		550	cCc/cAc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957837	1957837	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	122	691	0	ENST00000382891.5:c.2803C>T	p.Arg935Ter	p.R935*	ENST00000382891	NM_133335.3	935	Cga/Tga																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749443	41749443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	72	491	0	ENST00000226382.2:c.352G>A	p.Ala118Thr	p.A118T	ENST00000226382	NM_003924.3	118	Gcg/Acg																																																																															
TERT	7015	MSKCC	GRCh37	5	1293440	1293440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	91	572	0	ENST00000310581.5:c.1561C>T	p.Arg521Cys	p.R521C	ENST00000310581	NM_198253.2	521	Cgc/Tgc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31422913	31422913	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	188	822	0	ENST00000344624.3:c.3400G>T	p.Gly1134Ter	p.G1134*	ENST00000344624		1134	Gga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112176794	112176794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	104	465	0	ENST00000257430.4:c.5503A>G	p.Arg1835Gly	p.R1835G	ENST00000257430	NM_000038.5	1835	Aga/Gga																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500766	149500766	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	69	465	1	ENST00000261799.4:c.2463+1G>A		p.X821_splice	ENST00000261799	NM_002609.3	821																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176516607	176516607	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs545721160		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	122	674	1	ENST00000292408.4:c.4C>T	p.Arg2Trp	p.R2W	ENST00000292408	NM_213647.1	2	Cgg/Tgg																																																																															
FYN	2534	MSKCC	GRCh37	6	112017501	112017501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	95	470	0	ENST00000368678.4:c.1012G>A	p.Val338Ile	p.V338I	ENST00000368678		338	Gtc/Atc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521848	157521848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	72	396	0	ENST00000346085.5:c.4120C>T	p.Arg1374Cys	p.R1374C	ENST00000346085	NM_020732.3	1374	Cgc/Tgc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6042213	6042213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	151	811	0	ENST00000265849.7:c.408G>A	p.Met136Ile	p.M136I	ENST00000265849	NM_000535.5	136	atG/atA																																																																															
RAC1	5879	MSKCC	GRCh37	7	6441977	6441977	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	106	668	0	ENST00000356142.4:c.536T>C	p.Leu179Pro	p.L179P	ENST00000356142	NM_018890.3	179	cTc/cCc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5072515	5072515	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	89	465	0	ENST00000381652.3:c.1668delT	p.Phe556LeufsTer12	p.F556Lfs*12	ENST00000381652	NM_004972.3	555	acT/ac																																																																															
ABL1	25	MSKCC	GRCh37	9	133760012	133760012	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	147	933	0	ENST00000318560.5:c.2335A>G	p.Thr779Ala	p.T779A	ENST00000318560	NM_005157.4	779	Aca/Gca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401237	139401237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	111	768	3	ENST00000277541.6:c.3832G>A	p.Ala1278Thr	p.A1278T	ENST00000277541	NM_017617.3	1278	Gcc/Acc																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564768	139564768	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	116	748	0	ENST00000308874.7:c.561delC	p.Asn188ThrfsTer9	p.N188Tfs*9	ENST00000308874		186	gCc/gc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918535	44918535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	93	525	0	ENST00000377967.4:c.1018G>A	p.Ala340Thr	p.A340T	ENST00000377967	NM_021140.2	340	Gcc/Acc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041603	47041603	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	100	758	0	ENST00000329236.7:c.1597delG	p.Glu533ArgfsTer93	p.E533Rfs*93	ENST00000329236	NM_001204466.1	532	Ggg/gg																																																																															
ARAF	369	MSKCC	GRCh37	X	47424712	47424712	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	69	722	1	ENST00000377045.4:c.520C>A	p.Arg174Ser	p.R174S	ENST00000377045	NM_001654.4	174	Cgc/Agc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48649712	48649712	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149753411		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	108	779	2	ENST00000376670.3:c.196G>A	p.Ala66Thr	p.A66T	ENST00000376670	NM_002049.3	66	Gct/Act																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53241076	53241076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	127	611	0	ENST00000375401.3:c.1135C>T	p.Pro379Ser	p.P379S	ENST00000375401	NM_004187.3	379	Ccc/Tcc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53243926	53243926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	100	913	0	ENST00000375401.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000375401	NM_004187.3	356	cCt/cTt																																																																															
MED12	9968	MSKCC	GRCh37	X	70345240	70345240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	111	700	3	ENST00000374080.3:c.2266G>A	p.Val756Ile	p.V756I	ENST00000374080		756	Gta/Ata																																																																															
TSHR	7253	MSKCC	GRCh37	14	81562999	81562999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	130	509	1	ENST00000298171.2:c.562G>A	p.Gly188Ser	p.G188S	ENST00000298171	NM_000369.2	188	Ggc/Agc																																																																															
CIC	23152	MSKCC	GRCh37	19	42798827	42798836	+	frameshift_variant	Frame_Shift_Ins	INS	CTGGACCAGC	CTGGACCAGC	TGGTCATGCAG			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	112	757	0	ENST00000575354.2:c.4399_4408delCTGGACCAGCinsTGGTCATGCAG	p.Leu1467TrpfsTer47	p.L1467Wfs*47	ENST00000575354	NM_015125.3	1467	CTGGACCAGCgc/TGGTCATGCAGgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0017701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	158	359	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160837	56161470	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTAAATTTAGATCAATTAATTCCCTATAGTAAACAAAGTTAAACTTAAAATGTATTTTAGGCTAATATTTTTCTTTAATGTATTTATGAGGTTTTACTATCTTAATATACCATAGAATAGAAATTTGATCTATTTAATAAATTCAGTGAAAATGAAAGATTAAATCATGGAAATAGCTGTAGATTTTTCTTATATACAAAGATAATGAAGAATATGAATTAATAGAAACTTTAGTATAAAAAGTTGGAAATATTGTAAAAGTGATAAATTTAGAAGTTCTTGTGAACCACAGATGTATTAACCTATAGGTTTTCTTTTTAACTCTTTAGAACTGCAGCTGTGCACGTGGAACATTCTGTATTCATCTGCTATTTGTGATGCTCCGGGTGTTTCAACTAGAACCTTCAGACCCAATGTTATGGAGAAAAACTTTAAAGAATTTTGAGGTAGTTTTTAATAAATGCTTAGAGTAAAATTGTTAGCATATTCTTAGGATATATTCTTAAAATTTATCCTTCACTAAATTTAGGCAGTGACCATTTTAAAGGTGTGAAGGTATGTAAGAATTAGTTGATGCTTATAAATAGTTCTCATGAGATATTTACTAAACTTTTTCTTCTAGCTTGAAAAAAA	CTTAAATTTAGATCAATTAATTCCCTATAGTAAACAAAGTTAAACTTAAAATGTATTTTAGGCTAATATTTTTCTTTAATGTATTTATGAGGTTTTACTATCTTAATATACCATAGAATAGAAATTTGATCTATTTAATAAATTCAGTGAAAATGAAAGATTAAATCATGGAAATAGCTGTAGATTTTTCTTATATACAAAGATAATGAAGAATATGAATTAATAGAAACTTTAGTATAAAAAGTTGGAAATATTGTAAAAGTGATAAATTTAGAAGTTCTTGTGAACCACAGATGTATTAACCTATAGGTTTTCTTTTTAACTCTTTAGAACTGCAGCTGTGCACGTGGAACATTCTGTATTCATCTGCTATTTGTGATGCTCCGGGTGTTTCAACTAGAACCTTCAGACCCAATGTTATGGAGAAAAACTTTAAAGAATTTTGAGGTAGTTTTTAATAAATGCTTAGAGTAAAATTGTTAGCATATTCTTAGGATATATTCTTAAAATTTATCCTTCACTAAATTTAGGCAGTGACCATTTTAAAGGTGTGAAGGTATGTAAGAATTAGTTGATGCTTATAAATAGTTCTCATGAGATATTTACTAAACTTTTTCTTCTAGCTTGAAAAAAA	-			P-0017701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	43	97	0	ENST00000399503.3:c.1153-185_1035+77delTTAAATTTAGATCAATTAATTCCCTATAGTAAACAAAGTTAAACTTAAAATGTATTTTAGGCTAATATTTTTCTTTAATGTATTTATGAGGTTTTACTATCTTAATATACCATAGAATAGAAATTTGATCTATTTAATAAATTCAGTGAAAATGAAAGATTAAATCATGGAAATAGCTGTAGATTTTTCTTATATACAAAGATAATGAAGAATATGAATTAATAGAAACTTTAGTATAAAAAGTTGGAAATATTGTAAAAGTGATAAATTTAGAAGTTCTTGTGAACCACAGATGTATTAACCTATAGGTTTTCTTTTTAACTCTTTAGAACTGCAGCTGTGCACGTGGAACATTCTGTATTCATCTGCTATTTGTGATGCTCCGGGTGTTTCAACTAGAACCTTCAGACCCAATGTTATGGAGAAAAACTTTAAAGAATTTTGAGGTAGTTTTTAATAAATGCTTAGAGTAAAATTGTTAGCATATTCTTAGGATATATTCTTAAAATTTATCCTTCACTAAATTTAGGCAGTGACCATTTTAAAGGTGTGAAGGTATGTAAGAATTAGTTGATGCTTATAAATAGTTCTCATGAGATATTTACTAAACTTTTTCTTCTAGCTTGAAAAAAAC		p.X385_splice	ENST00000399503	NM_005921.1	385																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72829887	72829887	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	79	638	0	ENST00000268489.5:c.6694G>T	p.Glu2232Ter	p.E2232*	ENST00000268489	NM_006885.3	2232	Gaa/Taa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618837	37618837	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	197	659	1	ENST00000447079.4:c.513delC	p.Ser171ArgfsTer20	p.S171Rfs*20	ENST00000447079	NM_015083.1	171	agC/ag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37673701	37673701	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	149	539	0	ENST00000447079.4:c.2855G>C	p.Cys952Ser	p.C952S	ENST00000447079	NM_015083.1	952	tGt/tCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	155	643	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910427	50910427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	105	694	0	ENST00000440232.2:c.1682G>A	p.Arg561Gln	p.R561Q	ENST00000440232	NM_002691.3	561	cGg/cAg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741658	17741658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	140	534	1	ENST00000250003.3:c.329G>A	p.Arg110His	p.R110H	ENST00000250003	NM_002478.4	110	cGc/cAc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40476776	40476776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	115	751	2	ENST00000264657.5:c.1553G>A	p.Arg518Gln	p.R518Q	ENST00000264657	NM_139276.2	518	cGa/cAa																																																																															
GNA11	2767	MSKCC	GRCh37	19	3118992	3118992	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	139	683	0	ENST00000078429.4:c.676A>C	p.Ile226Leu	p.I226L	ENST00000078429	NM_002067.2	226	Atc/Ctc																																																																															
APC	324	MSKCC	GRCh37	5	112175721	112175723	+	frameshift_variant	Frame_Shift_Del	DEL	AGA	AGA	G			P-0017705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	119	349	0	ENST00000257430.4:c.4430_4432delAGAinsG	p.Gln1477ArgfsTer9	p.Q1477Rfs*9	ENST00000257430	NM_000038.5	1477	cAGAgg/cGgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577086	7577087	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0017706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	513	657	0	ENST00000269305.4:c.851_852delCA	p.Thr284ArgfsTer21	p.T284Rfs*21	ENST00000269305	NM_001126112.2	284	aCA/a																																																																															
ARAF	369	MSKCC	GRCh37	X	47422716	47422716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	321	511	0	ENST00000377045.4:c.188G>A	p.Arg63Gln	p.R63Q	ENST00000377045	NM_001654.4	63	cGa/cAa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399516	139399516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	500	650	2	ENST00000277541.6:c.4627G>A	p.Gly1543Arg	p.G1543R	ENST00000277541	NM_017617.3	1543	Ggg/Agg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8526626	8526626	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0017706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	34	473	0	ENST00000356435.5:c.568+1G>A		p.X190_splice	ENST00000356435		190																																																																																
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0017714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	152	511	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900894	3900894	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0017714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	37	601	0	ENST00000262367.5:c.202A>T	p.Lys68Ter	p.K68*	ENST00000262367	NM_004380.2	68	Aaa/Taa																																																																															
FH	2271	MSKCC	GRCh37	1	241682983	241682983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	18	479	0	ENST00000366560.3:c.40C>T	p.Leu14Phe	p.L14F	ENST00000366560	NM_000143.3	14	Ctc/Ttc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472466	88472466	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	27	632	0	ENST00000360948.2:c.2089delG	p.Asp697ThrfsTer62	p.D697Tfs*62	ENST00000360948	NM_001012338.2	697	Gac/ac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212578341	212578341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	14	388	2	ENST00000342788.4:c.916C>A	p.Arg306Ser	p.R306S	ENST00000342788	NM_005235.2	306	Cgt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112175436	112175484	+	frameshift_variant	Frame_Shift_Del	DEL	TCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAG	TCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAG	-			P-0017714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	28	264	0	ENST00000257430.4:c.4147_4195delATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAGTC	p.Met1383ValfsTer16	p.M1383Vfs*16	ENST00000257430	NM_000038.5	1382	cTCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAGt/ct																																																																															
BTK	695	MSKCC	GRCh37	X	100617671	100617671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	25	302	0	ENST00000308731.7:c.398G>A	p.Arg133Gln	p.R133Q	ENST00000308731	NM_000061.2	133	cGg/cAg																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0017722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	14	404	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11113836	11113836	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0017722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	46	447	0	ENST00000344626.4:c.1943+1G>T		p.X648_splice	ENST00000344626	NM_003072.3	648																																																																																
STK11	6794	MSKCC	GRCh37	19	1220578	1220578	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0017722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	61	578	0	ENST00000326873.7:c.598-2A>T		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602340	10602341	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGG			P-0017722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	61	804	0	ENST00000171111.5:c.1235_1237dup	p.Pro412dup	p.P412dup	ENST00000171111	NM_203500.1	412	cgt/cCCCgt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48032123	48032124	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	20	403	0	ENST00000234420.5:c.3514dup	p.Arg1172LysfsTer5	p.R1172Kfs*5	ENST00000234420	NM_000179.2	1171	-/A																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259229	36259229	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	65	557	0	ENST00000300305.3:c.262G>T	p.Glu88Ter	p.E88*	ENST00000300305		88	Gag/Tag																																																																															
STAT3	6774	MSKCC	GRCh37	17	40474404	40474404	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	70	709	0	ENST00000264657.5:c.1997T>G	p.Leu666Arg	p.L666R	ENST00000264657	NM_139276.2	666	cTg/cGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434968	49434969	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0017730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	40	635	0	ENST00000301067.7:c.6584_6585delCCinsG	p.Thr2195SerfsTer69	p.T2195Sfs*69	ENST00000301067	NM_003482.3	2195	aCC/aG																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	194	830	0	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112175921	112175921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	176	449	1	ENST00000257430.4:c.4630G>T	p.Glu1544Ter	p.E1544*	ENST00000257430	NM_000038.5	1544	Gaa/Taa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	163	772	0	ENST00000347630.2:c.392G>T	p.Trp131Leu	p.W131L	ENST00000347630	NM_001007230.1	131	tGg/tTg																																																																															
AXL	558	MSKCC	GRCh37	19	41748914	41748914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	50	425	2	ENST00000301178.4:c.1439G>A	p.Arg480His	p.R480H	ENST00000301178	NM_021913.4	480	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0017734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	71	444	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
ROS1	6098	MSKCC	GRCh37	6	117715804	117715804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	100	457	0	ENST00000368508.3:c.954G>T	p.Leu318Phe	p.L318F	ENST00000368508	NM_002944.2	318	ttG/ttT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509420	106509420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	109	482	0	ENST00000359195.3:c.1414C>T	p.Arg472Cys	p.R472C	ENST00000359195	NM_002649.2	472	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0017735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	250	462	0	ENST00000269305.4:c.673-1G>C		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49416488	49416488	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	231	497	0	ENST00000301067.7:c.16223G>T	p.Gly5408Val	p.G5408V	ENST00000301067	NM_003482.3	5408	gGc/gTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288708	15288708	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	18	44	0	ENST00000263388.2:c.4031G>C	p.Cys1344Ser	p.C1344S	ENST00000263388	NM_000435.2	1344	tGt/tCt																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735585	204735585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	210	436	0	ENST00000302823.3:c.386G>A	p.Cys129Tyr	p.C129Y	ENST00000302823	NM_005214.4	129	tGc/tAc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957521	1957521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	211	690	0	ENST00000382891.5:c.2620G>T	p.Ala874Ser	p.A874S	ENST00000382891	NM_133335.3	874	Gct/Tct																																																																															
KIT	3815	MSKCC	GRCh37	4	55594233	55594233	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1458	354	429	0	ENST00000288135.5:c.1936T>G	p.Tyr646Asp	p.Y646D	ENST00000288135	NM_000222.2	646	Tac/Gac																																																																															
KIT	3815	MSKCC	GRCh37	4	55598105	55598105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1647	435	530	0	ENST00000288135.5:c.2302G>C	p.Asp768His	p.D768H	ENST00000288135	NM_000222.2	768	Gac/Cac																																																																															
KIT	3815	MSKCC	GRCh37	4	55599237	55599237	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0017735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	286	320	0	ENST00000288135.5:c.2363G>T	p.Cys788Phe	p.C788F	ENST00000288135	NM_000222.2	788	tGt/tTt																																																																															
KDR	3791	MSKCC	GRCh37	4	55979549	55979549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	1172	577	0	ENST00000263923.4:c.898A>G	p.Ser300Gly	p.S300G	ENST00000263923	NM_002253.2	300	Agt/Ggt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247342	153247343	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	80	423	0	ENST00000281708.4:c.1459dup	p.Asp487GlyfsTer3	p.D487Gfs*3	ENST00000281708	NM_033632.3	487	gat/gGat																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196926	138196926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	140	328	0	ENST00000237289.4:c.588A>G	p.Ile196Met	p.I196M	ENST00000237289	NM_001270507.1	196	atA/atG																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450363	50450363	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	195	418	0	ENST00000331340.3:c.547C>A	p.Arg183Ser	p.R183S	ENST00000331340	NM_006060.4	183	Cgc/Agc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797493	45797493	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	51	613	0	ENST00000372115.3:c.984C>G	p.Cys328Trp	p.C328W	ENST00000372115	NM_001048171.1	328	tgC/tgG																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206653386	206653386	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	75	545	0	ENST00000367120.3:c.1270C>T	p.Gln424Ter	p.Q424*	ENST00000367120	NM_014002.3	424	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	106	511	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46240721	46240721	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0017738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	47	301	1	ENST00000334344.6:c.1580+1G>A		p.X527_splice	ENST00000334344	NM_152641.2	527																																																																																
FLT3	2322	MSKCC	GRCh37	13	28589818	28589818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	46	421	0	ENST00000241453.7:c.2562G>T	p.Trp854Cys	p.W854C	ENST00000241453	NM_004119.2	854	tgG/tgT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0017738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	105	584	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602644	10602644	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0017738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	97	610	0	ENST00000171111.5:c.934A>T	p.Lys312Ter	p.K312*	ENST00000171111	NM_203500.1	312	Aag/Tag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18975049	18975049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	33	282	0	ENST00000262803.5:c.2846G>A	p.Arg949Gln	p.R949Q	ENST00000262803	NM_002911.3	949	cGg/cAg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463518	25463518	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	38	471	0	ENST00000264709.3:c.2164G>T	p.Gly722Cys	p.G722C	ENST00000264709	NM_175629.2	722	Ggc/Tgc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753058	57753058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	38	333	0	ENST00000274289.3:c.958G>T	p.Glu320Ter	p.E320*	ENST00000274289	NM_006622.3	320	Gag/Tag																																																																															
CDK6	1021	MSKCC	GRCh37	7	92355099	92355099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	52	190	0	ENST00000265734.4:c.378G>C	p.Met126Ile	p.M126I	ENST00000265734	NM_001259.6	126	atG/atC																																																																															
SMO	6608	MSKCC	GRCh37	7	128850272	128850272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	113	588	0	ENST00000249373.3:c.1535G>T	p.Arg512Leu	p.R512L	ENST00000249373	NM_005631.4	512	cGc/cTc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141549447	141549455	+	inframe_deletion	In_Frame_Del	DEL	CGGGTGTGG	CGGGTGTGG	-			P-0017738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	52	300	0	ENST00000220592.5:c.2133_2141delCCACACCCG	p.His711_Arg714delinsGln	p.H711_R714delinsQ	ENST00000220592	NM_012154.3	711	caCCACACCCGg/cag																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317545	1317545	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0017738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	50	458	0				ENST00000381566																																																																																		
ERBB3	2065	MSKCC	GRCh37	12	56480404	56480404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	232	594	0	ENST00000267101.3:c.511G>A	p.Asp171Asn	p.D171N	ENST00000267101	NM_001982.3	171	Gat/Aat																																																																															
RET	5979	MSKCC	GRCh37	10	43608316	43608317	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTC			P-0017740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	262	719	0	ENST00000355710.3:c.1666_1668dup	p.Ser556dup	p.S556dup	ENST00000355710	NM_020975.4	556	ttc/ttCTCc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0017742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	329	495	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0017742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	80	341	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
ARAF	369	MSKCC	GRCh37	X	47426801	47426806	+	inframe_deletion	In_Frame_Del	DEL	AGGCTT	AGGCTT	-			P-0017743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	53	235	0	ENST00000377045.4:c.1046_1051delAGGCTT	p.Gln349_Phe351delinsLeu	p.Q349_F351delinsL	ENST00000377045	NM_001654.4	349	cAGGCTTtc/ctc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0017746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	98	339	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
KDR	3791	MSKCC	GRCh37	4	55955592	55955592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	143	421	1	ENST00000263923.4:c.3353G>A	p.Arg1118Gln	p.R1118Q	ENST00000263923	NM_002253.2	1118	cGa/cAa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420258	88420258	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	125	386	0	ENST00000360948.2:c.2428G>T	p.Glu810Ter	p.E810*	ENST00000360948	NM_001012338.2	810	Gaa/Taa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81965130	81965130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	53	453	2	ENST00000359376.3:c.2610G>T	p.Lys870Asn	p.K870N	ENST00000359376	NM_002661.3	870	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578456	7578467	+	inframe_deletion	In_Frame_Del	DEL	GCGGACGCGGGT	GCGGACGCGGGT	-			P-0017746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	139	627	0	ENST00000269305.4:c.463_474delACCCGCGTCCGC	p.Thr155_Arg158del	p.T155_R158del	ENST00000269305	NM_001126112.2	155	ACCCGCGTCCGC/-																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46588157	46588157	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	95	482	0	ENST00000263734.3:c.707A>C	p.Asp236Ala	p.D236A	ENST00000263734	NM_001430.4	236	gAc/gCc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46255776	46255776	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	124	363	1	ENST00000371998.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371998		130	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174916	112174917	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	74	296	0	ENST00000257430.4:c.3627dup	p.His1210ThrfsTer7	p.H1210Tfs*7	ENST00000257430	NM_000038.5	1209	gaa/gAaa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519704	176519704	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143108014		P-0017746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	186	477	0	ENST00000292408.4:c.976G>A	p.Glu326Lys	p.E326K	ENST00000292408	NM_213647.1	326	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	56	282	0	ENST00000346208.3:c.1275dupA	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112198	115112199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	187	487	0	ENST00000257566.3:c.1541dup	p.Asn514LysfsTer178	p.N514Kfs*178	ENST00000257566	NM_016569.3	514	aac/aaAc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068325	30068325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	44	258	0	ENST00000331968.5:c.2074G>A	p.Val692Met	p.V692M	ENST00000331968	NM_002742.2	692	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0017749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	35	491	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149511596	149511596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	41	504	0	ENST00000261799.4:c.1189C>T	p.Arg397Trp	p.R397W	ENST00000261799	NM_002609.3	397	Cgg/Tgg																																																																															
RB1	5925	MSKCC	GRCh37	13	48934194	48934194	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	56	444	0	ENST00000267163.4:c.649C>T	p.Gln217Ter	p.Q217*	ENST00000267163	NM_000321.2	217	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1220428	1220428	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	64	663	0	ENST00000326873.7:c.521A>C	p.His174Pro	p.H174P	ENST00000326873	NM_000455.4	174	cAc/cCc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138461	11138461	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0017749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	25	367	0	ENST00000344626.4:c.3217C>G	p.Leu1073Val	p.L1073V	ENST00000344626	NM_003072.3	1073	Ctg/Gtg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138564	11138564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	75	649	1	ENST00000344626.4:c.3320C>T	p.Ser1107Phe	p.S1107F	ENST00000344626	NM_003072.3	1107	tCc/tTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056294	180056294	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	60	598	0	ENST00000261937.6:c.950A>T	p.Gln317Leu	p.Q317L	ENST00000261937	NM_182925.4	317	cAg/cTg																																																																															
IRF4	3662	MSKCC	GRCh37	6	398904	398904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	44	340	0	ENST00000380956.4:c.714C>A	p.Ser238Arg	p.S238R	ENST00000380956	NM_001195286.1	238	agC/agA																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001502	150001502	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	56	462	0	ENST00000253339.5:c.2102A>G	p.Asp701Gly	p.D701G	ENST00000253339		701	gAc/gGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	766	429	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041648	47041648	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	250	289	0	ENST00000329236.7:c.1639G>T	p.Gly547Ter	p.G547*	ENST00000329236	NM_001204466.1	547	Gga/Tga																																																																															
AKT1	207	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	59	555	0	ENST00000349310.3:c.155T>G	p.Leu52Arg	p.L52R	ENST00000349310	NM_001014432.1	52	cTc/cGc																																																																															
MGA	23269	MSKCC	GRCh37	15	42052636	42052638	+	inframe_deletion	In_Frame_Del	DEL	GTG	GTG	-			P-0017754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	70	434	1	ENST00000219905.7:c.7310_7312delGTG	p.Gly2437del	p.G2437del	ENST00000219905	NM_001164273.1	2436	cGTGgt/cgt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43705471	43705471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	98	500	0	ENST00000382044.4:c.5151delC	p.Ser1718LeufsTer92	p.S1718Lfs*92	ENST00000382044	NM_001141980.1	1717	ccC/cc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181892	56181892	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0017754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	44	241	0	ENST00000399503.3:c.4114+2T>G		p.X1372_splice	ENST00000399503	NM_005921.1	1372																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0017756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	785	461	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885211	111885211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	131	436	1	ENST00000341259.2:c.1099G>A	p.Gly367Ser	p.G367S	ENST00000341259	NM_005475.2	367	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0017760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	32	683	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907420	32907421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1253401667		P-0017760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	52	564	2	ENST00000380152.3:c.1813dup	p.Ile605AsnfsTer11	p.I605Nfs*11	ENST00000380152		602	gga/ggAa																																																																															
NUF2	83540	MSKCC	GRCh37	1	163315494	163315494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	38	666	0	ENST00000271452.3:c.834C>G	p.Ile278Met	p.I278M	ENST00000271452	NM_145697.2	278	atC/atG																																																																															
PGR	5241	MSKCC	GRCh37	11	100998413	100998413	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0017760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	57	311	0	ENST00000325455.5:c.1389C>G	p.Tyr463Ter	p.Y463*	ENST00000325455	NM_001202474.3	463	taC/taG																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482820	67482820	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	260	565	0	ENST00000327367.4:c.1224C>G	p.Asp408Glu	p.D408E	ENST00000327367	NM_005902.3	408	gaC/gaG																																																																															
KDR	3791	MSKCC	GRCh37	4	55991394	55991394	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0017760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	171	784	1	ENST00000263923.4:c.67G>T	p.Gly23Cys	p.G23C	ENST00000263923	NM_002253.2	23	Ggt/Tgt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741257	145741257	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	141	687	0	ENST00000428558.2:c.1149G>A	p.Trp383Ter	p.W383*	ENST00000428558	NM_004260.3	383	tgG/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	220	741	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593477	48593478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0017762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	102	553	1	ENST00000342988.3:c.1229_1230insAA	p.Ser411ArgfsTer5	p.S411Rfs*5	ENST00000342988	NM_005359.5	410	cag/cAAag																																																																															
AGO2	27161	MSKCC	GRCh37	8	141551393	141551393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	165	861	1	ENST00000220592.5:c.1904G>A	p.Arg635Gln	p.R635Q	ENST00000220592	NM_012154.3	635	cGg/cAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971130	21971130	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	164	561	0	ENST00000304494.5:c.228delC	p.Thr77LeufsTer69	p.T77Lfs*69	ENST00000304494	NM_000077.4	76	gcC/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579343	7579385	+	protein_altering_variant	In_Frame_Del	DEL	TGCAAGAAGCCCAGACGGAAACCGTAGCTGCCCTGGTAGGTTT	TGCAAGAAGCCCAGACGGAAACCGTAGCTGCCCTGGTAGGTTT	A			P-0017762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	90	875	0	ENST00000269305.4:c.302_344delAAACCTACCAGGGCAGCTACGGTTTCCGTCTGGGCTTCTTGCAinsT	p.Lys101_His115delinsIle	p.K101_H115delinsI	ENST00000269305	NM_001126112.2	101	aAAACCTACCAGGGCAGCTACGGTTTCCGTCTGGGCTTCTTGCAt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0017765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	427	694	4	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45394805	45394805	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	113	484	2	ENST00000262160.6:c.544C>T	p.Arg182Ter	p.R182*	ENST00000262160	NM_005901.5	182	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0017765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	158	380	9	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
RET	5979	MSKCC	GRCh37	10	43595979	43595979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	607	883	16	ENST00000355710.3:c.146C>T	p.Pro49Leu	p.P49L	ENST00000355710	NM_020975.4	49	cCc/cTc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920430	134920430	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	277	727	3	ENST00000398015.3:c.2245A>C	p.Asn749His	p.N749H	ENST00000398015	NM_004441.4	749	Aac/Cac																																																																															
KIT	3815	MSKCC	GRCh37	4	55569990	55569990	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	80	764	5	ENST00000288135.5:c.857G>C	p.Gly286Ala	p.G286A	ENST00000288135	NM_000222.2	286	gGa/gCa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56488324	56488324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143726790		P-0017766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	187	803	0	ENST00000267101.3:c.1843G>A	p.Glu615Lys	p.E615K	ENST00000267101	NM_001982.3	615	Gag/Aag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0017766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	177	914	1	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916836	178916836	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	155	1034	0	ENST00000263967.3:c.223C>G	p.Gln75Glu	p.Q75E	ENST00000263967	NM_006218.2	75	Caa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577505	7577505	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	219	800	0	ENST00000269305.4:c.776A>T	p.Asp259Val	p.D259V	ENST00000269305	NM_001126112.2	259	gAc/gTc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029408	14029408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	150	572	0	ENST00000311895.7:c.1619C>T	p.Ser540Leu	p.S540L	ENST00000311895	NM_005236.2	540	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112175096	112175097	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0017766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	68	360	0	ENST00000257430.4:c.3807_3808delAT	p.Ile1269MetfsTer6	p.I1269Mfs*6	ENST00000257430	NM_000038.5	1269	ATa/a																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281491	49281491	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	206	764	0	ENST00000282018.3:c.538C>A	p.Gln180Lys	p.Q180K	ENST00000282018	NM_020377.2	180	Cag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175366	112175367	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0017766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	69	389	0	ENST00000257430.4:c.4076_4077delAA	p.Lys1359IlefsTer15	p.K1359Ifs*15	ENST00000257430	NM_000038.5	1359	AAa/a																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048635	180048635	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150093355		P-0017766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	301	820	0	ENST00000261937.6:c.1927G>A	p.Val643Ile	p.V643I	ENST00000261937	NM_182925.4	643	Gtc/Atc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0017767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	83	570	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
CDH1	999	MSKCC	GRCh37	16	68842387	68842387	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0017767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	186	656	2	ENST00000261769.5:c.448A>T	p.Arg150Ter	p.R150*	ENST00000261769	NM_004360.3	150	Aga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115439	115115439	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	107	681	1	ENST00000257566.3:c.887A>T	p.Asn296Ile	p.N296I	ENST00000257566	NM_016569.3	296	aAc/aTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	124	629	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168803	56168804	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0017770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	117	527	0	ENST00000399503.3:c.1658dup	p.Tyr553Ter	p.Y553*	ENST00000399503	NM_005921.1	553	tac/tAac																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56174870	56174870	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	134	580	0	ENST00000399503.3:c.2029C>T	p.Gln677Ter	p.Q677*	ENST00000399503	NM_005921.1	677	Cag/Tag																																																																															
EZH2	2146	MSKCC	GRCh37	7	148515002	148515003	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TTCTTCTTTATCATTG			P-0017770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	92	607	0	ENST00000320356.2:c.1191_1206dup	p.Glu403GlnfsTer2	p.E403Qfs*2	ENST00000320356	NM_004456.4	402	-/CAATGATAAAGAAGAA																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521514	46521514	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	37	854	0	ENST00000262741.5:c.894C>G	p.Ile298Met	p.I298M	ENST00000262741	NM_003629.3	298	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	104	977	1	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647224	23647224	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	31	1014	0	ENST00000261584.4:c.643G>C	p.Glu215Gln	p.E215Q	ENST00000261584	NM_024675.3	215	Gaa/Caa																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246490640	246490640	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0017773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	24	554	0	ENST00000388985.4:c.395-1G>C		p.X132_splice	ENST00000388985		132																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49418622	49418622	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	92	834	0	ENST00000301067.7:c.15892delG	p.Val5298CysfsTer7	p.V5298Cfs*7	ENST00000301067	NM_003482.3	5298	Gtg/tg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743844	40743844	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	27	645	0	ENST00000373198.4:c.3151C>T	p.Gln1051Ter	p.Q1051*	ENST00000373198	NM_133170.3	1051	Cag/Tag																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38978704	38978704	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	24	762	0	ENST00000357387.3:c.802A>G	p.Thr268Ala	p.T268A	ENST00000357387	NM_152756.3	268	Aca/Gca																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120411	94120411	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	42	515	0	ENST00000369303.4:c.640A>G	p.Ile214Val	p.I214V	ENST00000369303	NM_004440.3	214	Atc/Gtc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117708970	117708970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	68	747	1	ENST00000368508.3:c.1987C>T	p.Pro663Ser	p.P663S	ENST00000368508	NM_002944.2	663	Ccc/Tcc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509249	106509249	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	160	958	0	ENST00000359195.3:c.1243G>T	p.Glu415Ter	p.E415*	ENST00000359195	NM_002649.2	415	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	17	482	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
YAP1	10413	MSKCC	GRCh37	11	102076674	102076674	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	53	347	0	ENST00000282441.5:c.853C>G	p.Leu285Val	p.L285V	ENST00000282441	NM_001130145.2	285	Ctg/Gtg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165327	32165327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	89	668	0	ENST00000375023.3:c.4801C>A	p.Gln1601Lys	p.Q1601K	ENST00000375023	NM_004557.3	1601	Cag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242489	+	protein_altering_variant	In_Frame_Del	DEL	TAAGAGAAGCAACATCTCCG	TAAGAGAAGCAACATCTCCG	CT			P-0017780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	81	514	2	ENST00000275493.2:c.2240_2259delTAAGAGAAGCAACATCTCCGinsCT	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCCG/tCT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	694	701	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18715777	18715777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	70	392	0	ENST00000266497.5:c.3608G>A	p.Arg1203Lys	p.R1203K	ENST00000266497		1203	aGg/aAg																																																																															
RB1	5925	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587776783		P-0017781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	236	355	1	ENST00000267163.4:c.1215+1G>A		p.X405_splice	ENST00000267163	NM_000321.2	405																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3789597	3789597	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	463	513	0	ENST00000262367.5:c.4262G>T	p.Cys1421Phe	p.C1421F	ENST00000262367	NM_004380.2	1421	tGc/tTc																																																																															
ATR	545	MSKCC	GRCh37	3	142178072	142178072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	259	298	0	ENST00000350721.4:c.7346C>T	p.Ser2449Leu	p.S2449L	ENST00000350721	NM_001184.3	2449	tCa/tTa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	46	599	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1325489	1325489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	30	344	0	ENST00000381566.1:c.186C>A	p.Phe62Leu	p.F62L	ENST00000381566		62	ttC/ttA																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589575	67589576	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	173	443	0	ENST00000274335.5:c.1344dupA	p.Leu449IlefsTer3	p.L449Ifs*3	ENST00000274335		446	-/A																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0017800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	230	626	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0017800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	130	366	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720712	89720712	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	154	149	0	ENST00000371953.3:c.867del	p.Val290Ter	p.V290*	ENST00000371953	NM_000314.4	288	gAa/ga																																																																															
STK40	83931	MSKCC	GRCh37	1	36826894	36826894	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1468	336	681	0	ENST00000373129.3:c.40T>C	p.Ser14Pro	p.S14P	ENST00000373129	NM_032017.1	14	Tcg/Ccg																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813396	102813396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	215	456	0	ENST00000307046.8:c.293G>A	p.Arg98Gln	p.R98Q	ENST00000307046	NM_001111285.1	98	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921536	178921537	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTGCAACCTACGTGAATGTAAATATGC			P-0017800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	131	505	0	ENST00000263967.3:c.1043_1044insGCGTGCAACCTACGTGAATGTAAATAT	p.Asn347_Ile348insMetArgAlaThrTyrValAsnValAsn	p.N347_I348insMRATYVNVN	ENST00000263967	NM_006218.2	340	tgt/tGTGCAACCTACGTGAATGTAAATATGCgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	32	681	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107125	27107125	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	47	426	0	ENST00000324856.7:c.6736G>T	p.Glu2246Ter	p.E2246*	ENST00000324856	NM_006015.4	2246	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602314	10602314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	126	725	1	ENST00000171111.5:c.1264G>A	p.Asp422Asn	p.D422N	ENST00000171111	NM_203500.1	422	Gat/Aat																																																																															
FANCA	2175	MSKCC	GRCh37	16	89816265	89816265	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	37	514	0	ENST00000389301.3:c.3112C>G	p.Leu1038Val	p.L1038V	ENST00000389301	NM_000135.2	1038	Ctc/Gtc																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2489247	2489247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	35	583	2	ENST00000355716.4:c.152C>T	p.Ser51Phe	p.S51F	ENST00000355716	NM_003820.2	51	tCc/tTc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65311270	65311270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	58	503	0	ENST00000342505.4:c.2041C>T	p.Arg681Trp	p.R681W	ENST00000342505	NM_002227.2	681	Cgg/Tgg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246195	46246195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	72	491	0	ENST00000334344.6:c.4289G>T	p.Ser1430Ile	p.S1430I	ENST00000334344	NM_152641.2	1430	aGt/aTt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112614	115112614	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	115	895	0	ENST00000257566.3:c.1126G>T	p.Asp376Tyr	p.D376Y	ENST00000257566	NM_016569.3	376	Gac/Tac																																																																															
POLE	5426	MSKCC	GRCh37	12	133226301	133226302	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	80	698	2	ENST00000320574.5:c.3756_3757delGGinsTT	p.GlnGlu1252HisTer	p.QE1252H*	ENST00000320574	NM_006231.2	1252	caGGaa/caTTaa																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041042	29041042	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	67	391	0	ENST00000282397.4:c.386G>C	p.Ser129Thr	p.S129T	ENST00000282397	NM_002019.4	129	aGt/aCt																																																																															
MGA	23269	MSKCC	GRCh37	15	41988858	41988858	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	72	583	1	ENST00000219905.7:c.1650G>T	p.Gln550His	p.Q550H	ENST00000219905	NM_001164273.1	550	caG/caT																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712503	43712503	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	61	639	0	ENST00000382044.4:c.4681G>T	p.Gly1561Ter	p.G1561*	ENST00000382044	NM_001141980.1	1561	Gga/Tga																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467815	99467815	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	38	464	0	ENST00000268035.6:c.2684G>T	p.Arg895Leu	p.R895L	ENST00000268035	NM_000875.3	895	cGg/cTg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89851353	89851353	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	41	553	0	ENST00000389301.3:c.1379G>C	p.Arg460Pro	p.R460P	ENST00000389301	NM_000135.2	460	cGa/cCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs878854073		P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	113	491	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
AURKB	9212	MSKCC	GRCh37	17	8110638	8110638	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	172	706	0	ENST00000585124.1:c.254A>C	p.Lys85Thr	p.K85T	ENST00000585124	NM_004217.3	85	aAa/aCa																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428017	33428017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	133	668	0	ENST00000335858.7:c.606G>T	p.Trp202Cys	p.W202C	ENST00000335858	NM_133629.2	202	tgG/tgT																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619355	37619355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	17	263	0	ENST00000447079.4:c.1031G>A	p.Arg344Gln	p.R344Q	ENST00000447079	NM_015083.1	344	cGg/cAg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37876086	37876086	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	54	525	0	ENST00000269571.5:c.1945A>T	p.Ser649Cys	p.S649C	ENST00000269571		649	Agc/Tgc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41223064	41223064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	65	675	0	ENST00000357654.3:c.4867G>A	p.Ala1623Thr	p.A1623T	ENST00000357654	NM_007294.3	1623	Gct/Act																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119951	70119951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	40	371	1	ENST00000245479.2:c.953G>A	p.Ser318Asn	p.S318N	ENST00000245479	NM_000346.3	318	aGc/aAc																																																																															
YES1	7525	MSKCC	GRCh37	18	745968	745968	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	35	635	0	ENST00000314574.4:c.554G>C	p.Arg185Thr	p.R185T	ENST00000314574	NM_005433.3	185	aGa/aCa																																																																															
INSR	3643	MSKCC	GRCh37	19	7267515	7267515	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	89	613	0	ENST00000302850.5:c.493G>T	p.Asp165Tyr	p.D165Y	ENST00000302850	NM_000208.2	165	Gat/Tat																																																																															
XPO1	7514	MSKCC	GRCh37	2	61709627	61709627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	70	272	1	ENST00000401558.2:c.2860G>A	p.Glu954Lys	p.E954K	ENST00000401558	NM_003400.3	954	Gaa/Aaa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543816	212543816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	38	593	0	ENST00000342788.4:c.1583G>C	p.Arg528Thr	p.R528T	ENST00000342788	NM_005235.2	528	aGa/aCa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812225	212812225	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	115	461	0	ENST00000342788.4:c.351G>T	p.Leu117Phe	p.L117F	ENST00000342788	NM_005235.2	117	ttG/ttT																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205808	128205808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	92	422	0	ENST00000341105.2:c.67G>A	p.Asp23Asn	p.D23N	ENST00000341105	NM_032638.4	23	Gac/Aac																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665443	138665443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	108	588	1	ENST00000330315.3:c.122G>A	p.Gly41Asp	p.G41D	ENST00000330315	NM_023067.3	41	gGc/gAc																																																																															
ATR	545	MSKCC	GRCh37	3	142275300	142275300	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	112	718	0	ENST00000350721.4:c.2003G>T	p.Arg668Leu	p.R668L	ENST00000350721	NM_001184.3	668	cGg/cTg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55138597	55138597	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	107	538	0	ENST00000257290.5:c.1274A>G	p.His425Arg	p.H425R	ENST00000257290	NM_006206.4	425	cAt/cGt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197721	66197721	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	61	582	1	ENST00000273854.3:c.2978C>A	p.Ser993Ter	p.S993*	ENST00000273854	NM_004439.5	993	tCa/tAa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230786	66230786	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	64	491	0	ENST00000273854.3:c.2185G>T	p.Gly729Ter	p.G729*	ENST00000273854	NM_004439.5	729	Gga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629148	187629148	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	66	574	0	ENST00000441802.2:c.1834C>A	p.Leu612Met	p.L612M	ENST00000441802	NM_005245.3	612	Ctg/Atg																																																																															
TERT	7015	MSKCC	GRCh37	5	1293662	1293662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	166	713	0	ENST00000310581.5:c.1339C>A	p.Arg447Ser	p.R447S	ENST00000310581	NM_198253.2	447	Cgc/Agc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294247	1294247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	75	666	0	ENST00000310581.5:c.754G>T	p.Gly252Trp	p.G252W	ENST00000310581	NM_198253.2	252	Ggg/Tgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169276	32169276	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	88	455	2	ENST00000375023.3:c.3757C>A	p.Pro1253Thr	p.P1253T	ENST00000375023	NM_004557.3	1253	Cca/Aca																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652073	36652073	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	85	672	0	ENST00000244741.5:c.195G>T	p.Trp65Cys	p.W65C	ENST00000244741	NM_000389.4	65	tgG/tgT																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157406022	157406022	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	33	438	0	ENST00000346085.5:c.2264C>G	p.Ser755Cys	p.S755C	ENST00000346085	NM_020732.3	755	tCt/tGt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978465	2978465	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	88	499	0	ENST00000396946.4:c.865G>T	p.Ala289Ser	p.A289S	ENST00000396946	NM_032415.4	289	Gcc/Tcc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38274884	38274884	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	38	753	0	ENST00000425967.3:c.1696A>G	p.Met566Val	p.M566V	ENST00000425967	NM_001174067.1	566	Atg/Gtg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528774	8528774	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	45	293	1	ENST00000356435.5:c.358C>A	p.Gln120Lys	p.Q120K	ENST00000356435		120	Caa/Aaa																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80409494	80409494	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	115	624	0	ENST00000286548.4:c.620G>T	p.Gly207Val	p.G207V	ENST00000286548	NM_002072.3	207	gGg/gTg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570404	87570404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	110	695	1	ENST00000277120.3:c.2144G>A	p.Arg715Gln	p.R715Q	ENST00000277120		715	cGg/cAg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	188	999	0	ENST00000374672.4:c.1225A>G	p.Lys409Glu	p.K409E	ENST00000374672	NM_004235.4	409	Aag/Gag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399240	139399240	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	97	599	0	ENST00000277541.6:c.4903G>T	p.Ala1635Ser	p.A1635S	ENST00000277541	NM_017617.3	1635	Gcc/Tcc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1314991	1314991	+	downstream_gene_variant	3'Flank	SNP	G	G	C			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	63	629	0				ENST00000381566																																																																																		
RBM10	8241	MSKCC	GRCh37	X	47044937	47044937	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	124	437	0	ENST00000329236.7:c.2029G>T	p.Asp677Tyr	p.D677Y	ENST00000329236	NM_001204466.1	677	Gac/Tac																																																																															
BTK	695	MSKCC	GRCh37	X	100611800	100611800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	66	280	0	ENST00000308731.7:c.1321G>A	p.Glu441Lys	p.E441K	ENST00000308731	NM_000061.2	441	Gaa/Aaa																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871724	35871724	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1213	169	512	0	ENST00000216797.5:c.782C>G	p.Pro261Arg	p.P261R	ENST00000216797	NM_020529.2	261	cCa/cGa																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114674	73114674	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	31	572	0	ENST00000356692.5:c.1055C>G	p.Ser352Cys	p.S352C	ENST00000356692		352	tCt/tGt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519947		P-0017807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	105	478	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0017807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	46	360	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	53	296	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0017807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	103	602	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ATM	472	MSKCC	GRCh37	11	108200960	108200960	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	62	365	1	ENST00000278616.4:c.7327C>T	p.Arg2443Ter	p.R2443*	ENST00000278616	NM_000051.3	2443	Cga/Tga																																																																															
JUN	3725	MSKCC	GRCh37	1	59248312	59248313	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	18	73	0	ENST00000371222.2:c.430dup	p.Ala144GlyfsTer166	p.A144Gfs*166	ENST00000371222	NM_002228.3	144	gct/gGct																																																																															
ATM	472	MSKCC	GRCh37	11	108180886	108180886	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0017807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	20	240	0	ENST00000278616.4:c.5763-1G>C		p.X1921_splice	ENST00000278616	NM_000051.3	1921																																																																																
SOX9	6662	MSKCC	GRCh37	17	70119786	70119787	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGA			P-0017807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	186	584	0	ENST00000245479.2:c.792_795dup	p.Pro266ThrfsTer31	p.P266Tfs*31	ENST00000245479	NM_000346.3	263	ggc/ggCAGAc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12660111	12660111	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	31	488	0	ENST00000251849.4:c.110G>C	p.Gly37Ala	p.G37A	ENST00000251849	NM_002880.3	37	gGc/gCc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016565	12016565	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	78	331	0	ENST00000353533.5:c.701A>T	p.Asn234Ile	p.N234I	ENST00000353533	NM_003010.3	234	aAt/aTt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519970		P-0017810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	116	725	0	ENST00000347630.2:c.393G>T	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgT																																																																															
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	140	478	0	ENST00000288319.7:c.1211C>T	p.Pro404Leu	p.P404L	ENST00000288319	NM_182918.3	404	cCg/cTg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851285	156851285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	210	520	0	ENST00000524377.1:c.2242C>T	p.Arg748Trp	p.R748W	ENST00000524377	NM_002529.3	748	Cgg/Tgg																																																																															
SYK	6850	MSKCC	GRCh37	9	93606304	93606304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	221	603	0	ENST00000375746.1:c.124C>T	p.Arg42Cys	p.R42C	ENST00000375746	NM_001174167.1	42	Cgc/Tgc																																																																															
CDH1	999	MSKCC	GRCh37	16	68862107	68862107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	169	467	0	ENST00000261769.5:c.2195G>A	p.Arg732Gln	p.R732Q	ENST00000261769	NM_004360.3	732	cGg/cAg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061797	38061797	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	328	748	0	ENST00000250448.2:c.192C>G	p.Phe64Leu	p.F64L	ENST00000250448	NM_004496.3	64	ttC/ttG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1598	408	540	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190321	32190321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	137	455	0	ENST00000375023.3:c.418C>T	p.Arg140Cys	p.R140C	ENST00000375023	NM_004557.3	140	Cgc/Tgc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798111	45798111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	234	605	1	ENST00000372115.3:c.698G>A	p.Arg233Gln	p.R233Q	ENST00000372115	NM_001048171.1	233	cGa/cAa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21624530	21624530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	175	618	0	ENST00000421138.2:c.1499T>C	p.Leu500Pro	p.L500P	ENST00000421138		500	cTg/cCg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4110566	4110566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	359	553	1	ENST00000262948.5:c.391G>T	p.Val131Leu	p.V131L	ENST00000262948	NM_030662.3	131	Gtg/Ttg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	184	564	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0017818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	71	545	1	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952088	178952088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	84	433	0	ENST00000263967.3:c.3143A>G	p.His1048Arg	p.H1048R	ENST00000263967	NM_006218.2	1048	cAt/cGt																																																																															
MED12	9968	MSKCC	GRCh37	X	70339629	70339629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	220	640	1	ENST00000374080.3:c.298G>A	p.Asp100Asn	p.D100N	ENST00000374080		100	Gat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	227	379	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	288	499	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																																																															
CDH1	999	MSKCC	GRCh37	16	68845764	68845764	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0017824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	96	338	0	ENST00000261769.5:c.1008+2T>G		p.X336_splice	ENST00000261769	NM_004360.3	336																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	120	415	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821403	32821403	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	169	681	0	ENST00000354258.4:c.191C>G	p.Ser64Cys	p.S64C	ENST00000354258	NM_000593.5	64	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	591	672	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0017828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	38	690	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0017828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	168	261	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873661	35873661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	117	498	1	ENST00000303115.3:c.617G>A	p.Arg206Gln	p.R206Q	ENST00000303115	NM_002185.3	206	cGa/cAa																																																																															
RAB35	11021	MSKCC	GRCh37	12	120536873	120536873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	324	721	4	ENST00000229340.5:c.313G>A	p.Glu105Lys	p.E105K	ENST00000229340	NM_006861.6	105	Gaa/Aaa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554161	63554161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	250	794	1	ENST00000307078.5:c.578C>A	p.Ser193Tyr	p.S193Y	ENST00000307078	NM_004655.3	193	tCt/tAt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350614	15350614	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201646539		P-0017828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	844	812	0	ENST00000263377.2:c.3301G>A	p.Val1101Met	p.V1101M	ENST00000263377	NM_058243.2	1101	Gtg/Atg																																																																															
ALK	238	MSKCC	GRCh37	2	29917775	29917775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	558	650	1	ENST00000389048.3:c.893C>T	p.Ala298Val	p.A298V	ENST00000389048	NM_004304.4	298	gCc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	39	660	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0017832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1346	37	821	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	237	442	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118892	115118895	+	frameshift_variant	Frame_Shift_Del	DEL	ATGT	ATGT	-			P-0017833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	228	437	0	ENST00000257566.3:c.446_449delACAT	p.Tyr149PhefsTer3	p.Y149Ffs*3	ENST00000257566	NM_016569.3	149	tACATt/tt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181842	56181842	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	212	535	0	ENST00000399503.3:c.4067delG	p.Gly1356AlafsTer21	p.G1356Afs*21	ENST00000399503	NM_005921.1	1356	Ggc/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	682	482	0	ENST00000269305.4:c.376-1G>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
PTEN	5728	MSKCC	GRCh37	10	89717644	89717644	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	181	305	0	ENST00000371953.3:c.669G>C	p.Lys223Asn	p.K223N	ENST00000371953	NM_000314.4	223	aaG/aaC																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864696	57864696	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	587	457	0	ENST00000228682.2:c.2173C>A	p.Pro725Thr	p.P725T	ENST00000228682	NM_005269.2	725	Cca/Aca																																																																															
FLT1	2321	MSKCC	GRCh37	13	29007984	29007984	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	99	178	0	ENST00000282397.4:c.785T>A	p.Val262Asp	p.V262D	ENST00000282397	NM_002019.4	262	gTt/gAt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008201	29008201	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	98	164	0	ENST00000282397.4:c.670delC	p.Arg224AspfsTer7	p.R224Dfs*7	ENST00000282397	NM_002019.4	224	Cga/ga																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135314	30135314	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	55	398	0	ENST00000331968.5:c.504G>T	p.Trp168Cys	p.W168C	ENST00000331968	NM_002742.2	168	tgG/tgT																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476331	88476331	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	212	400	0	ENST00000360948.2:c.1801G>C	p.Val601Leu	p.V601L	ENST00000360948	NM_001012338.2	601	Gtc/Ctc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678534	88678534	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	63	219	0	ENST00000360948.2:c.1002C>A	p.His334Gln	p.H334Q	ENST00000360948	NM_001012338.2	334	caC/caA																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602745	10602745	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	464	386	0	ENST00000171111.5:c.833C>G	p.Pro278Arg	p.P278R	ENST00000171111	NM_203500.1	278	cCg/cGg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42861458	42861458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	337	251	0	ENST00000398585.3:c.412G>T	p.Ala138Ser	p.A138S	ENST00000398585	NM_001135099.1	138	Gcc/Tcc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32819904	32819904	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	40	398	0	ENST00000354258.4:c.1006T>A	p.Phe336Ile	p.F336I	ENST00000354258	NM_000593.5	336	Ttc/Atc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874212	151874212	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	176	259	0	ENST00000262189.6:c.8326G>T	p.Glu2776Ter	p.E2776*	ENST00000262189	NM_170606.2	2776	Gaa/Taa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484362	8484362	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	161	282	0	ENST00000356435.5:c.3170G>T	p.Gly1057Val	p.G1057V	ENST00000356435		1057	gGg/gTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8633452	8633452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	94	236	0	ENST00000356435.5:c.217G>A	p.Glu73Lys	p.E73K	ENST00000356435		73	Gag/Aag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412309	139412309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	369	394	1	ENST00000277541.6:c.1336G>T	p.Gly446Cys	p.G446C	ENST00000277541	NM_017617.3	446	Ggc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	59	346	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	62	396	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	80	300	1	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	66	259	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	61	289	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	50	317	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	48	255	0	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238958	5238958	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	23	222	0	ENST00000357368.4:c.1821delC	p.Val608TrpfsTer30	p.V608Wfs*30	ENST00000357368	NM_002850.3	607	ccC/cc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277275	41277275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	49	217	1	ENST00000349496.5:c.1744C>T	p.Arg582Trp	p.R582W	ENST00000349496	NM_001904.3	582	Cgg/Tgg																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538846	23538846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	27	184	0	ENST00000380871.4:c.593C>T	p.Pro198Leu	p.P198L	ENST00000380871	NM_006167.3	198	cCg/cTg																																																																															
ALK	238	MSKCC	GRCh37	2	30143341	30143341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	53	347	0	ENST00000389048.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000389048	NM_004304.4	62	tCg/tTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165282	47165283	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	37	243	0	ENST00000409792.3:c.843dupA	p.Glu282ArgfsTer9	p.E282Rfs*9	ENST00000409792	NM_014159.6	281	-/A																																																																															
CALR	811	MSKCC	GRCh37	19	13050364	13050364	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	55	365	0	ENST00000316448.5:c.320delG	p.Gly107AlafsTer4	p.G107Afs*4	ENST00000316448	NM_004343.3	106	Ggg/gg																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	69	345	1	ENST00000262741.5:c.883delA	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	206	410	8	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	33	339	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	56	327	1	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	54	490	0	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800564	32800564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	88	422	0	ENST00000374899.4:c.983C>T	p.Ala328Val	p.A328V	ENST00000374899	NM_018833.2	328	gCg/gTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223023	5223023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	42	289	0	ENST00000357368.4:c.2780C>T	p.Thr927Met	p.T927M	ENST00000357368	NM_002850.3	927	aCg/aTg																																																																															
CCND1	595	MSKCC	GRCh37	11	69465973	69465973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	54	315	1	ENST00000227507.2:c.811G>A	p.Ala271Thr	p.A271T	ENST00000227507	NM_053056.2	271	Gcc/Acc																																																																															
EED	8726	MSKCC	GRCh37	11	85966301	85966301	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183646722		P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	48	182	0	ENST00000263360.6:c.398G>A	p.Arg133Gln	p.R133Q	ENST00000263360	NM_003797.3	133	cGg/cAg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118391565	118391565	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	37	242	0	ENST00000534358.1:c.11483delA	p.Lys3828ArgfsTer31	p.K3828Rfs*31	ENST00000534358	NM_005933.3	3826	ttA/tt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489540	56489540	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200724560		P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	64	279	0	ENST00000267101.3:c.2005C>T	p.Arg669Cys	p.R669C	ENST00000267101	NM_001982.3	669	Cgc/Tgc																																																																															
POLE	5426	MSKCC	GRCh37	12	133236065	133236065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	38	286	4	ENST00000320574.5:c.3091G>A	p.Glu1031Lys	p.E1031K	ENST00000320574	NM_006231.2	1031	Gag/Aag																																																																															
FLT3	2322	MSKCC	GRCh37	13	28624343	28624343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	67	284	0	ENST00000241453.7:c.631C>T	p.Pro211Ser	p.P211S	ENST00000241453	NM_004119.2	211	Cca/Tca																																																																															
DICER1	23405	MSKCC	GRCh37	14	95571486	95571486	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	36	230	0	ENST00000343455.3:c.3191T>G	p.Leu1064Arg	p.L1064R	ENST00000343455	NM_177438.2	1064	cTt/cGt																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66782074	66782075	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	36	252	0	ENST00000307102.5:c.1047_1048del	p.Arg349SerfsTer16	p.R349Sfs*16	ENST00000307102	NM_002755.3	347	gcAGag/gcag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121553	2121553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	67	371	1	ENST00000219476.3:c.1882C>T	p.Arg628Cys	p.R628C	ENST00000219476	NM_000548.3	628	Cgc/Tgc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2124310	2124310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	76	484	0	ENST00000219476.3:c.2465C>T	p.Ala822Val	p.A822V	ENST00000219476	NM_000548.3	822	gCg/gTg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041768	14041768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	49	299	0	ENST00000311895.7:c.2315G>A	p.Arg772Gln	p.R772Q	ENST00000311895	NM_005236.2	772	cGa/cAa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89851308	89851308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	39	383	0	ENST00000389301.3:c.1424C>T	p.Thr475Met	p.T475M	ENST00000389301	NM_000135.2	475	aCg/aTg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108557	8108557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	66	378	0	ENST00000585124.1:c.838G>A	p.Glu280Lys	p.E280K	ENST00000585124	NM_004217.3	280	Gag/Aag																																																																															
NF1	4763	MSKCC	GRCh37	17	29553610	29553610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	24	153	0	ENST00000358273.4:c.2159G>A	p.Arg720Gln	p.R720Q	ENST00000358273	NM_001042492.2	720	cGg/cAg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78727859	78727859	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778541724		P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	52	386	0	ENST00000306801.3:c.704C>T	p.Pro235Leu	p.P235L	ENST00000306801	NM_020761.2	235	cCg/cTg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372130	45372131	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	95	381	1	ENST00000262160.6:c.1038dup	p.Ala347CysfsTer2	p.A347Cfs*2	ENST00000262160	NM_005901.5	346	-/T																																																																															
AXL	558	MSKCC	GRCh37	19	41745129	41745129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	51	381	0	ENST00000301178.4:c.1195G>A	p.Val399Met	p.V399M	ENST00000301178	NM_021913.4	399	Gtg/Atg																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47600710	47600710	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	38	278	1	ENST00000263735.4:c.184+1G>A		p.X62_splice	ENST00000263735	NM_002354.2	62																																																																																
MSH2	4436	MSKCC	GRCh37	2	47698135	47698135	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	82	366	0	ENST00000233146.2:c.1697delA	p.Asn566IlefsTer24	p.N566Ifs*24	ENST00000233146	NM_000251.2	565	Aaa/aa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025856	48025857	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	21	210	0	ENST00000234420.5:c.741dupA	p.Arg248ThrfsTer8	p.R248Tfs*8	ENST00000234420	NM_000179.2	245	ata/atAa																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30309583	30309583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	69	399	1	ENST00000307677.4:c.439G>A	p.Gly147Ser	p.G147S	ENST00000307677	NM_138578.1	147	Ggc/Agc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42840391	42840391	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	32	285	0	ENST00000398585.3:c.1357T>C	p.Tyr453His	p.Y453H	ENST00000398585	NM_001135099.1	453	Tat/Cat																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266471	41266471	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	32	254	0	ENST00000349496.5:c.268C>T	p.Arg90Ter	p.R90*	ENST00000349496	NM_001904.3	90	Cga/Tga																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934764	49934767	+	frameshift_variant	Frame_Shift_Del	DEL	ACAG	ACAG	-			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	46	426	0	ENST00000296474.3:c.2129_2132delCTGT	p.Ser710Ter	p.S710*	ENST00000296474	NM_002447.2	710	tCTGTa/ta																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940163	49940163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	53	327	0	ENST00000296474.3:c.880C>T	p.Arg294Trp	p.R294W	ENST00000296474	NM_002447.2	294	Cgg/Tgg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1906063	1906063	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	90	508	0	ENST00000382891.5:c.718G>C	p.Val240Leu	p.V240L	ENST00000382891	NM_133335.3	240	Gtt/Ctt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1941428	1941428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	111	393	2	ENST00000382891.5:c.1804C>T	p.Arg602Trp	p.R602W	ENST00000382891	NM_133335.3	602	Cgg/Tgg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564482	86564482	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	39	197	0	ENST00000274376.6:c.214C>A	p.Leu72Ile	p.L72I	ENST00000274376	NM_002890.2	72	Cta/Ata																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435889	149435889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	58	397	0	ENST00000286301.3:c.2335G>A	p.Val779Met	p.V779M	ENST00000286301	NM_005211.3	779	Gtg/Atg																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225731	26225731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	61	260	0	ENST00000360408.1:c.349C>T	p.Arg117Cys	p.R117C	ENST00000360408	NM_003532.2	117	Cgc/Tgc																																																																															
HGF	3082	MSKCC	GRCh37	7	81346610	81346610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	29	227	0	ENST00000222390.5:c.1343A>G	p.His448Arg	p.H448R	ENST00000222390	NM_000601.4	448	cAt/cGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877989	151877989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	23	127	0	ENST00000262189.6:c.6956C>T	p.Ala2319Val	p.A2319V	ENST00000262189	NM_170606.2	2319	gCc/gTc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738404	145738404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	49	360	0	ENST00000428558.2:c.2581C>T	p.Pro861Ser	p.P861S	ENST00000428558	NM_004260.3	861	Ccc/Tcc																																																																															
TEK	7010	MSKCC	GRCh37	9	27180310	27180310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	53	245	1	ENST00000380036.4:c.974G>A	p.Arg325His	p.R325H	ENST00000380036	NM_000459.3	325	cGc/cAc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781415	135781415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	43	228	0	ENST00000298552.3:c.1550G>A	p.Arg517Gln	p.R517Q	ENST00000298552	NM_001162426.1	517	cGg/cAg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137328439	137328439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	43	493	0	ENST00000481739.1:c.1368G>T	p.Glu456Asp	p.E456D	ENST00000481739	NM_002957.4	456	gaG/gaT																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223371	53223371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	57	216	0	ENST00000375401.3:c.3988G>A	p.Ala1330Thr	p.A1330T	ENST00000375401	NM_004187.3	1330	Gcc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100983	27100983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	136	457	0	ENST00000324856.7:c.4268delC	p.Pro1423LeufsTer58	p.P1423Lfs*58	ENST00000324856	NM_006015.4	1422	tCc/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	61	400	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115415	115115415	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	61	415	1	ENST00000257566.3:c.911G>T	p.Arg304Leu	p.R304L	ENST00000257566	NM_016569.3	304	cGg/cTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991495	72991503	+	inframe_deletion	In_Frame_Del	DEL	GAGGCCCAG	GAGGCCCAG	-			P-0017842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	51	415	0	ENST00000268489.5:c.2542_2550delCTGGGCCTC	p.Leu848_Leu850del	p.L848_L850del	ENST00000268489	NM_006885.3	848	CTGGGCCTC/-																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212570097	212570097	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	11	277	0	ENST00000342788.4:c.1144G>T	p.Glu382Ter	p.E382*	ENST00000342788	NM_005235.2	382	Gaa/Taa																																																																															
PIM1	5292	MSKCC	GRCh37	6	37138419	37138419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	96	205	0	ENST00000373509.5:c.68C>T	p.Thr23Ile	p.T23I	ENST00000373509	NM_002648.3	23	aCc/aTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106723	27106723	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	34	363	0	ENST00000324856.7:c.6334C>G	p.Leu2112Val	p.L2112V	ENST00000324856	NM_006015.4	2112	Ctt/Gtt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484206	8484206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	27	368	0	ENST00000356435.5:c.3326G>A	p.Arg1109His	p.R1109H	ENST00000356435		1109	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0017847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	317	466	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
B2M	567	MSKCC	GRCh37	15	45007747	45007747	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	83	188	0	ENST00000558401.1:c.194G>C	p.Arg65Thr	p.R65T	ENST00000558401	NM_004048.2	65	aGa/aCa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786798	3786798	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	21	238	0	ENST00000262367.5:c.4413C>G	p.Ile1471Met	p.I1471M	ENST00000262367	NM_004380.2	1471	atC/atG																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399344	139399344	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	511	412	2	ENST00000277541.6:c.4799T>A	p.Leu1600Gln	p.L1600Q	ENST00000277541	NM_017617.3	1600	cTg/cAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76889133	76889137	+	frameshift_variant	Frame_Shift_Del	DEL	CAAAC	CAAAC	-			P-0017852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	76	387	0	ENST00000373344.5:c.4873_4877delGTTTG	p.Val1625SerfsTer3	p.V1625Sfs*3	ENST00000373344	NM_000489.3	1625	GTTTGt/t																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0017858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	212	703	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0017858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	2994	578	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272213	15272213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	46	440	0	ENST00000263388.2:c.6226G>T	p.Gly2076Trp	p.G2076W	ENST00000263388	NM_000435.2	2076	Ggg/Tgg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47693869	47693869	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	108	637	0	ENST00000233146.2:c.1583A>G	p.Lys528Arg	p.K528R	ENST00000233146	NM_000251.2	528	aAg/aGg																																																																															
TP63	8626	MSKCC	GRCh37	3	189612032	189612032	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	145	510	0	ENST00000264731.3:c.1784A>T	p.His595Leu	p.H595L	ENST00000264731	NM_003722.4	595	cAt/cTt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149439336	149439336	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	389	573	0	ENST00000286301.3:c.2059C>A	p.Leu687Met	p.L687M	ENST00000286301	NM_005211.3	687	Ctg/Atg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707624	176707624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	55	558	1	ENST00000439151.2:c.5681G>A	p.Arg1894His	p.R1894H	ENST00000439151	NM_022455.4	1894	cGt/cAt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117665365	117665365	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	16	343	0	ENST00000368508.3:c.4382A>G	p.Asn1461Ser	p.N1461S	ENST00000368508	NM_002944.2	1461	aAc/aGc																																																																															
BTK	695	MSKCC	GRCh37	X	100629544	100629544	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	177	371	0	ENST00000308731.7:c.220C>A	p.Pro74Thr	p.P74T	ENST00000308731	NM_000061.2	74	Cct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0017886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	388	1063	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223979	36223979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1235	216	1115	0	ENST00000222270.7:c.6529C>T	p.Leu2177Phe	p.L2177F	ENST00000222270	NM_014727.1	2177	Ctt/Ttt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48028031	48028031	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	147	464	0	ENST00000234420.5:c.2913delG	p.Ile972LeufsTer25	p.I972Lfs*25	ENST00000234420	NM_000179.2	970	tGg/tg																																																																															
BARD1	580	MSKCC	GRCh37	2	215674235	215674235	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	223	716	0	ENST00000260947.4:c.59C>G	p.Pro20Arg	p.P20R	ENST00000260947	NM_000465.2	20	cCt/cGt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117647510	117647510	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	115	834	0	ENST00000368508.3:c.5434A>T	p.Ser1812Cys	p.S1812C	ENST00000368508	NM_002944.2	1812	Agt/Tgt																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793310	139793310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	254	839	1	ENST00000247668.2:c.118G>A	p.Val40Ile	p.V40I	ENST00000247668	NM_021138.3	40	Gtc/Atc																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0017889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	69	659	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894365		P-0017889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	8	925	1	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118391545	118391545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	13	562	0	ENST00000534358.1:c.11458C>T	p.Pro3820Ser	p.P3820S	ENST00000534358	NM_005933.3	3820	Ccc/Tcc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71090671	71090671	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	40	268	0	ENST00000318789.4:c.677delC	p.Thr226LysfsTer10	p.T226Kfs*10	ENST00000318789	NM_032682.5	226	aCa/aa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	95	669	1	ENST00000347630.2:c.397T>A	p.Phe133Ile	p.F133I	ENST00000347630	NM_001007230.1	133	Ttc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	63	415	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578278	7578286	+	inframe_deletion	In_Frame_Del	DEL	GAGGGGCCA	GAGGGGCCA	-			P-0017890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	87	737	0	ENST00000269305.4:c.563_571delTGGCCCCTC	p.Leu188_Pro190del	p.L188_P190del	ENST00000269305	NM_001126112.2	188	cTGGCCCCTCct/cct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	82	797	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0017892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	151	629	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711887	89711887	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	99	544	2	ENST00000371953.3:c.507delC	p.Ser170ValfsTer13	p.S170Vfs*13	ENST00000371953	NM_000314.4	169	Ccc/cc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0017892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	116	788	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
ATM	472	MSKCC	GRCh37	11	108159786	108159786	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0017892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	76	408	0	ENST00000278616.4:c.4192A>T	p.Lys1398Ter	p.K1398*	ENST00000278616	NM_000051.3	1398	Aaa/Taa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21555721	21555721	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	169	926	0	ENST00000382592.4:c.2549G>T	p.Cys850Phe	p.C850F	ENST00000382592	NM_014572.2	850	tGt/tTt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115718	8115719	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATA			P-0017898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	157	736	0	ENST00000346208.3:c.1064_1065insCATA	p.Met356IlefsTer16	p.M356Ifs*16	ENST00000346208		355	act/acCATAt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644856	67644856	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	154	665	0	ENST00000264010.4:c.124delC	p.Gln42ArgfsTer20	p.Q42Rfs*20	ENST00000264010	NM_006565.3	41	Ccc/cc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89345543	89345543	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	25	223	0	ENST00000301030.4:c.7407C>A	p.Tyr2469Ter	p.Y2469*	ENST00000301030	NM_001256183.1	2469	taC/taA																																																																															
ARAF	369	MSKCC	GRCh37	X	47430798	47430798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	81	1180	1	ENST00000377045.4:c.1763G>A	p.Arg588His	p.R588H	ENST00000377045	NM_001654.4	588	cGc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242480	55242504	+	protein_altering_variant	In_Frame_Del	DEL	AACATCTCCGAAAGCCAACAAGGAA	AACATCTCCGAAAGCCAACAAGGAA	G			P-0017904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	933	120	0	ENST00000275493.2:c.2250_2274delinsG	p.Thr751_Glu758del	p.T751_E758del	ENST00000275493	NM_005228.3	750	gcAACATCTCCGAAAGCCAACAAGGAA/gcG																																																																															
CDK8	1024	MSKCC	GRCh37	13	26967543	26967543	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	49	687	0	ENST00000381527.3:c.686C>G	p.Thr229Arg	p.T229R	ENST00000381527	NM_001260.1	229	aCg/aGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	107	550	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1219336	1219336	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	156	685	0	ENST00000326873.7:c.388G>T	p.Glu130Ter	p.E130*	ENST00000326873	NM_000455.4	130	Gag/Tag																																																																															
PARP1	142	MSKCC	GRCh37	1	226578210	226578210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	36	541	0	ENST00000366794.5:c.518G>T	p.Arg173Leu	p.R173L	ENST00000366794	NM_001618.3	173	cGg/cTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332713	70332713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	58	568	0	ENST00000373644.4:c.618C>A	p.His206Gln	p.H206Q	ENST00000373644	NM_030625.2	206	caC/caA																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741445	17741445	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	59	895	0	ENST00000250003.3:c.116A>T	p.Asp39Val	p.D39V	ENST00000250003	NM_002478.4	39	gAc/gTc																																																																															
ATM	472	MSKCC	GRCh37	11	108192148	108192148	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	111	403	0	ENST00000278616.4:c.6572+1G>A		p.X2191_splice	ENST00000278616	NM_000051.3	2191																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49421023	49421023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	56	339	0	ENST00000301067.7:c.14726C>T	p.Pro4909Leu	p.P4909L	ENST00000301067	NM_003482.3	4909	cCa/cTa																																																																															
POLE	5426	MSKCC	GRCh37	12	133244183	133244183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	65	547	1	ENST00000320574.5:c.2225G>T	p.Arg742Leu	p.R742L	ENST00000320574	NM_006231.2	742	cGt/cTt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422027	81422027	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	40	272	0	ENST00000298171.2:c.3G>A	p.Met1?	p.M1?	ENST00000298171	NM_000369.2	1	atG/atA																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719758	190719758	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	37	389	0	ENST00000441310.2:c.1760C>G	p.Pro587Arg	p.P587R	ENST00000441310	NM_000534.4	587	cCt/cGt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198274548	198274548	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	52	466	0	ENST00000335508.6:c.850G>C	p.Ala284Pro	p.A284P	ENST00000335508	NM_012433.2	284	Gca/Cca																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31504701	31504701	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	102	688	0	ENST00000344624.3:c.1629A>T	p.Arg543Ser	p.R543S	ENST00000344624		543	agA/agT																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87482254	87482254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	64	658	0	ENST00000277120.3:c.1541C>A	p.Pro514Gln	p.P514Q	ENST00000277120		514	cCa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	134	714	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916614	178916614	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	57	510	0	ENST00000263967.3:c.1A>G	p.Met1?	p.M1?	ENST00000263967	NM_006218.2	1	Atg/Gtg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350084	89350084	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	58	694	0	ENST00000301030.4:c.2866G>C	p.Glu956Gln	p.E956Q	ENST00000301030	NM_001256183.1	956	Gag/Cag																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518580	69518580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	55	653	0	ENST00000294312.3:c.65G>T	p.Gly22Val	p.G22V	ENST00000294312	NM_005117.2	22	gGg/gTg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73349473	73349473	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	153	658	0	ENST00000377767.4:c.863A>C	p.His288Pro	p.H288P	ENST00000377767	NM_014953.3	288	cAc/cCc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348971	89348971	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	67	628	0	ENST00000301030.4:c.3979G>T	p.Glu1327Ter	p.E1327*	ENST00000301030	NM_001256183.1	1327	Gag/Tag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226598	2226598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	47	779	0	ENST00000398665.3:c.4078G>A	p.Glu1360Lys	p.E1360K	ENST00000398665	NM_032482.2	1360	Gag/Aag																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794788	242794788	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	47	285	0	ENST00000334409.5:c.421G>T	p.Glu141Ter	p.E141*	ENST00000334409	NM_005018.2	141	Gag/Tag																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121067	29121067	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	202	844	0	ENST00000328354.6:c.490A>T	p.Ser164Cys	p.S164C	ENST00000328354	NM_007194.3	164	Agt/Tgt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540896	187540896	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	43	438	0	ENST00000441802.2:c.6844G>T	p.Val2282Leu	p.V2282L	ENST00000441802	NM_005245.3	2282	Gtg/Ttg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520476	176520476	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	188	827	0	ENST00000292408.4:c.1321A>T	p.Ser441Cys	p.S441C	ENST00000292408	NM_213647.1	441	Agc/Tgc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157256615	157256615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	74	549	0	ENST00000346085.5:c.1942G>T	p.Gly648Cys	p.G648C	ENST00000346085	NM_020732.3	648	Ggc/Tgc																																																																															
SMO	6608	MSKCC	GRCh37	7	128848687	128848687	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	139	537	1	ENST00000249373.3:c.1352G>T	p.Arg451Leu	p.R451L	ENST00000249373	NM_005631.4	451	cGc/cTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044905	47044907	+	frameshift_variant	Frame_Shift_Del	DEL	GTG	GTG	TT			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	128	841	2	ENST00000329236.7:c.1997_1999delGTGinsTT	p.Arg666LeufsTer58	p.R666Lfs*58	ENST00000329236	NM_001204466.1	666	cGTGgg/cTTgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	176	493	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16049691	16049691	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0017918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	152	529	1	ENST00000268712.3:c.1081C>T	p.Arg361Ter	p.R361*	ENST00000268712	NM_006311.3	361	Cga/Tga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029405	16029406	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0017918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	176	653	1	ENST00000268712.3:c.1624_1625delGA	p.Glu542ArgfsTer20	p.E542Rfs*20	ENST00000268712	NM_006311.3	542	GAa/a																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56176580	56176581	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	174	452	0	ENST00000399503.3:c.2133dup	p.Gly712ArgfsTer24	p.G712Rfs*24	ENST00000399503	NM_005921.1	710	-/A																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181864	56181875	+	inframe_deletion	In_Frame_Del	DEL	ACCAAATCATTC	ACCAAATCATTC	-			P-0017918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	133	427	0	ENST00000399503.3:c.4090_4101delCAAATCATTCAC	p.Gln1364_His1367del	p.Q1364_H1367del	ENST00000399503	NM_005921.1	1363	aACCAAATCATTCac/aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0017919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	451	746	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0017919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	138	275	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0017919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	230	633	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PGR	5241	MSKCC	GRCh37	11	100933232	100933232	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	79	567	0	ENST00000325455.5:c.2158C>A	p.Gln720Lys	p.Q720K	ENST00000325455	NM_001202474.3	720	Caa/Aaa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017816	31017816	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	79	637	0	ENST00000375687.4:c.678C>A	p.Asp226Glu	p.D226E	ENST00000375687	NM_015338.5	226	gaC/gaA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	441	615	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0017920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	335	707	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	165	324	1	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	408	676	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149433917	149433917	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	132	717	0	ENST00000286301.3:c.2731C>T	p.Gln911Ter	p.Q911*	ENST00000286301	NM_005211.3	911	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579579	7579580	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCAAGGG			P-0017923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	176	606	0	ENST00000269305.4:c.100_107dup	p.Ser37ProfsTer10	p.S37Pfs*10	ENST00000269305	NM_001126112.2	36	ccg/ccCCCTTGCCg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922145	39922145	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	149	311	0	ENST00000378444.4:c.4027G>C	p.Ala1343Pro	p.A1343P	ENST00000378444	NM_001123385.1	1343	Gct/Cct																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144111	11144111	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	167	873	0	ENST00000344626.4:c.3692C>A	p.Ala1231Asp	p.A1231D	ENST00000344626	NM_003072.3	1231	gCc/gAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0017926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	73	569	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0017929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	457	418	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	282	551	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348030	89348030	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1508	251	1002	2	ENST00000301030.4:c.4920G>T	p.Lys1640Asn	p.K1640N	ENST00000301030	NM_001256183.1	1640	aaG/aaT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141454	11141454	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1472	192	707	0	ENST00000344626.4:c.3431A>T	p.Glu1144Val	p.E1144V	ENST00000344626	NM_003072.3	1144	gAg/gTg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607730	46607730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	234	804	3	ENST00000263734.3:c.1919C>T	p.Pro640Leu	p.P640L	ENST00000263734	NM_001430.4	640	cCc/cTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163555	32163555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	137	580	0	ENST00000375023.3:c.5671G>A	p.Gly1891Ser	p.G1891S	ENST00000375023	NM_004557.3	1891	Ggc/Agc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27058033	27058033	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	80	461	0	ENST00000324856.7:c.1741C>T	p.Gln581Ter	p.Q581*	ENST00000324856	NM_006015.4	581	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	121	484	1	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584787	48584787	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	143	526	0	ENST00000342988.3:c.865C>T	p.Gln289Ter	p.Q289*	ENST00000342988	NM_005359.5	289	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	44	587	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
RHOA	387	MSKCC	GRCh37	3	49413009	49413009	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552758		P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	151	668	1	ENST00000418115.1:c.14G>A	p.Arg5Gln	p.R5Q	ENST00000418115	NM_001664.2	5	cGg/cAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720711	89720712	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	26	159	0	ENST00000371953.3:c.867dup	p.Val290SerfsTer8	p.V290Sfs*8	ENST00000371953	NM_000314.4	288	gaa/gAaa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953937	32953937	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80359152		P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	104	499	0	ENST00000380152.3:c.9004G>A	p.Glu3002Lys	p.E3002K	ENST00000380152		3002	Gaa/Aaa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632519	3632519	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	92	672	0	ENST00000294008.3:c.5329G>C	p.Glu1777Gln	p.E1777Q	ENST00000294008	NM_032444.2	1777	Gag/Cag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857875	9857875	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	60	472	0	ENST00000330684.3:c.3526G>C	p.Glu1176Gln	p.E1176Q	ENST00000330684	NM_001134407.1	1176	Gag/Cag																																																																															
CDH1	999	MSKCC	GRCh37	16	68844175	68844175	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	138	660	0	ENST00000261769.5:c.763C>T	p.Gln255Ter	p.Q255*	ENST00000261769	NM_004360.3	255	Cag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125873	47125873	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	45	154	0	ENST00000409792.3:c.5398-1G>C		p.X1800_splice	ENST00000409792	NM_014159.6	1800																																																																																
BCL6	604	MSKCC	GRCh37	3	187451474	187451474	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145456310		P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	72	345	0	ENST00000232014.4:c.8C>T	p.Ser3Leu	p.S3L	ENST00000232014	NM_001130845.1	3	tCg/tTg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468319	50468319	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	80	454	0	ENST00000331340.3:c.1554G>C	p.Met518Ile	p.M518I	ENST00000331340	NM_006060.4	518	atG/atC																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139397678	139397678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	85	513	0	ENST00000277541.6:c.5123C>T	p.Ser1708Leu	p.S1708L	ENST00000277541	NM_017617.3	1708	tCg/tTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223811	53223811	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	162	838	0	ENST00000375401.3:c.3548C>G	p.Ser1183Cys	p.S1183C	ENST00000375401	NM_004187.3	1183	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0017935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	38	639	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711874	89711874	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0017935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	28	403	0	ENST00000371953.3:c.493-1G>A		p.X165_splice	ENST00000371953	NM_000314.4	165																																																																																
RB1	5925	MSKCC	GRCh37	13	49047507	49047507	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0017936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	67	373	0	ENST00000267163.4:c.2501C>G	p.Ser834Ter	p.S834*	ENST00000267163	NM_000321.2	834	tCa/tGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0017936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	302	445	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0017936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	1030	690	1	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0017936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	1042	637	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
RB1	5925	MSKCC	GRCh37	13	48951171	48951171	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0017936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	174	354	0	ENST00000267163.4:c.1332+1G>A		p.X444_splice	ENST00000267163	NM_000321.2	444																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11097172	11097172	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	428	579	0	ENST00000344626.4:c.663delT	p.Pro222HisfsTer81	p.P222Hfs*81	ENST00000344626	NM_003072.3	221	ccT/cc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729313	41729313	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	578	372	0	ENST00000242208.4:c.1216G>C	p.Asp406His	p.D406H	ENST00000242208	NM_002192.2	406	Gat/Cat																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730069	41730069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	712	468	0	ENST00000242208.4:c.460G>C	p.Glu154Gln	p.E154Q	ENST00000242208	NM_002192.2	154	Gaa/Caa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	159	599	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974747	21974747	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	27	209	0	ENST00000304494.5:c.80A>G	p.Glu27Gly	p.E27G	ENST00000304494	NM_000077.4	27	gAg/gGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	113	734	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111526	8111526	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	224	796	0	ENST00000346208.3:c.1012T>C	p.Cys338Arg	p.C338R	ENST00000346208		338	Tgc/Cgc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81965247	81965247	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	158	484	0	ENST00000359376.3:c.2727G>C	p.Lys909Asn	p.K909N	ENST00000359376	NM_002661.3	909	aaG/aaC																																																																															
BRAF	673	MSKCC	GRCh37	7	140534432	140534432	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	66	406	0	ENST00000288602.6:c.481C>A	p.Leu161Met	p.L161M	ENST00000288602	NM_004333.4	161	Ctg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0017944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1229	261	823	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577599	7577600	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0017944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	70	529	0	ENST00000269305.4:c.681_682insTT	p.Asp228LeufsTer20	p.D228Lfs*20	ENST00000269305	NM_001126112.2	227	-/TT																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246068	41246427	+	inframe_deletion	In_Frame_Del	DEL	GTATTATCTGTGGCTCAGTAACAAATGCTCCTATAATTAGATTTTCAGTTACATGGCTTAAGTTGGGGAGGCTTGCCTTCTTCCGATAGGTTTTCCCAAATATTTTGTCTTCAATATTACTCTCTACTGATTTGGAGTGAACTCTTTCACTTTTACATATTAAAGCCTCATGAGGATCACTGGCCAGTAAGTCTATTTTCTCTGAAGAACCAGAATATTCATCTACCTCATTTAGAACGTCCAATACATCAGCTACTTTGGCATTTGATTCAGACTCCCCATCATGTGAGTCATCAGAACCTAACAGTTCATCACTTCTGGAAAACCACTCATTAACTTTCTGAATGCTGCTATTTAGTG	GTATTATCTGTGGCTCAGTAACAAATGCTCCTATAATTAGATTTTCAGTTACATGGCTTAAGTTGGGGAGGCTTGCCTTCTTCCGATAGGTTTTCCCAAATATTTTGTCTTCAATATTACTCTCTACTGATTTGGAGTGAACTCTTTCACTTTTACATATTAAAGCCTCATGAGGATCACTGGCCAGTAAGTCTATTTTCTCTGAAGAACCAGAATATTCATCTACCTCATTTAGAACGTCCAATACATCAGCTACTTTGGCATTTGATTCAGACTCCCCATCATGTGAGTCATCAGAACCTAACAGTTCATCACTTCTGGAAAACCACTCATTAACTTTCTGAATGCTGCTATTTAGTG	-			P-0017944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	196	606	0	ENST00000357654.3:c.1121_1480delCACTAAATAGCAGCATTCAGAAAGTTAATGAGTGGTTTTCCAGAAGTGATGAACTGTTAGGTTCTGATGACTCACATGATGGGGAGTCTGAATCAAATGCCAAAGTAGCTGATGTATTGGACGTTCTAAATGAGGTAGATGAATATTCTGGTTCTTCAGAGAAAATAGACTTACTGGCCAGTGATCCTCATGAGGCTTTAATATGTAAAAGTGAAAGAGTTCACTCCAAATCAGTAGAGAGTAATATTGAAGACAAAATATTTGGGAAAACCTATCGGAAGAAGGCAAGCCTCCCCAACTTAAGCCATGTAACTGAAAATCTAATTATAGGAGCATTTGTTACTGAGCCACAGATAATAC	p.Thr374_Gln494delinsLys	p.T374_Q494delinsK	ENST00000357654	NM_007294.3	374	aCACTAAATAGCAGCATTCAGAAAGTTAATGAGTGGTTTTCCAGAAGTGATGAACTGTTAGGTTCTGATGACTCACATGATGGGGAGTCTGAATCAAATGCCAAAGTAGCTGATGTATTGGACGTTCTAAATGAGGTAGATGAATATTCTGGTTCTTCAGAGAAAATAGACTTACTGGCCAGTGATCCTCATGAGGCTTTAATATGTAAAAGTGAAAGAGTTCACTCCAAATCAGTAGAGAGTAATATTGAAGACAAAATATTTGGGAAAACCTATCGGAAGAAGGCAAGCCTCCCCAACTTAAGCCATGTAACTGAAAATCTAATTATAGGAGCATTTGTTACTGAGCCACAGATAATACaa/aaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257113	16257113	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	168	495	1	ENST00000375759.3:c.4378G>T	p.Glu1460Ter	p.E1460*	ENST00000375759	NM_015001.2	1460	Gaa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49422703	49422703	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	139	477	1	ENST00000301067.7:c.14290G>T	p.Glu4764Ter	p.E4764*	ENST00000301067	NM_003482.3	4764	Gag/Tag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701205	43701205	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	130	532	0	ENST00000382044.4:c.5490T>A	p.Cys1830Ter	p.C1830*	ENST00000382044	NM_001141980.1	1830	tgT/tgA																																																																															
BLM	641	MSKCC	GRCh37	15	91293268	91293268	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	96	314	0	ENST00000355112.3:c.770C>G	p.Ser257Cys	p.S257C	ENST00000355112	NM_000057.2	257	tCt/tGt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56378179	56378179	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	138	353	0	ENST00000348428.3:c.952A>T	p.Thr318Ser	p.T318S	ENST00000348428	NM_006785.3	318	Act/Tct																																																																															
BRD4	23476	MSKCC	GRCh37	19	15375218	15375218	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	30	285	0	ENST00000263377.2:c.1209C>G	p.Ile403Met	p.I403M	ENST00000263377	NM_058243.2	403	atC/atG																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198260836	198260836	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	84	494	0	ENST00000335508.6:c.3483G>T	p.Met1161Ile	p.M1161I	ENST00000335508	NM_012433.2	1161	atG/atT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248768	212248768	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	53	219	0	ENST00000342788.4:c.3499G>T	p.Glu1167Ter	p.E1167*	ENST00000342788	NM_005235.2	1167	Gag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164411	47164411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	40	238	0	ENST00000409792.3:c.1715C>T	p.Ser572Phe	p.S572F	ENST00000409792	NM_014159.6	572	tCt/tTt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528544	89528544	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	A			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	38	205	0	ENST00000336596.2:c.2847-3C>A		p.X949_splice	ENST00000336596	NM_005233.5	949																																																																																
HIST1H1C	3006	MSKCC	GRCh37	6	26056591	26056591	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	23	153	0	ENST00000343677.2:c.66G>C	p.Lys22Asn	p.K22N	ENST00000343677	NM_005319.3	22	aaG/aaC																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984066	2984066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	85	356	0	ENST00000396946.4:c.464G>A	p.Arg155Lys	p.R155K	ENST00000396946	NM_032415.4	155	aGg/aAg																																																																															
SMO	6608	MSKCC	GRCh37	7	128852044	128852044	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	59	545	0	ENST00000249373.3:c.2116C>G	p.Gln706Glu	p.Q706E	ENST00000249373	NM_005631.4	706	Cag/Gag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874991	151874991	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	32	216	0	ENST00000262189.6:c.7547G>C	p.Arg2516Thr	p.R2516T	ENST00000262189	NM_170606.2	2516	aGa/aCa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68934334	68934334	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1366	84	671	0	ENST00000288368.4:c.400C>G	p.Leu134Val	p.L134V	ENST00000288368	NM_024870.2	134	Ctt/Gtt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591247	67591247	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0017957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	301	456	0	ENST00000274335.5:c.1746-1G>C		p.X582_splice	ENST00000274335		582																																																																																
SPOP	8405	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	89	552	0	ENST00000347630.2:c.398T>C	p.Phe133Ser	p.F133S	ENST00000347630	NM_001007230.1	133	tTc/tCc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11182139	11182142	+	frameshift_variant	Frame_Shift_Del	DEL	AGGC	AGGC	GG			P-0017960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	194	509	1	ENST00000361445.4:c.6704_6707delGCCTinsCC	p.Gly2235AlafsTer9	p.G2235Afs*9	ENST00000361445	NM_004958.3	2235	gGCCTc/gCCc																																																																															
APC	324	MSKCC	GRCh37	5	112162875	112162875	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0017960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	100	476	0	ENST00000257430.4:c.1479C>G	p.Tyr493Ter	p.Y493*	ENST00000257430	NM_000038.5	493	taC/taG																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836301	151836301	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	180	443	0	ENST00000262189.6:c.14504T>C	p.Ile4835Thr	p.I4835T	ENST00000262189	NM_170606.2	4835	aTt/aCt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921450	39921451	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	139	214	0	ENST00000378444.4:c.4369dup	p.Ile1457AsnfsTer4	p.I1457Nfs*4	ENST00000378444	NM_001123385.1	1457	att/aAtt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44928900	44928900	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	111	254	0	ENST00000377967.4:c.2000delA	p.Gln667ArgfsTer24	p.Q667Rfs*24	ENST00000377967	NM_021140.2	667	cAg/cg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	240	452	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161148	56161190	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCTTTTTAACTCTTTAGAACTGCAGCTGTGCACGTGGAACA	TTTCTTTTTAACTCTTTAGAACTGCAGCTGTGCACGTGGAACA	-			P-0017970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	163	224	0	ENST00000399503.3:c.1036-17_1061delTCTTTTTAACTCTTTAGAACTGCAGCTGTGCACGTGGAACATT		p.X346_splice	ENST00000399503	NM_005921.1	346																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56170909	56170910	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0017970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	118	278	0	ENST00000399503.3:c.1743_1744delGA	p.Glu581AspfsTer9	p.E581Dfs*9	ENST00000399503	NM_005921.1	579	gtGAga/gtga																																																																															
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	49	813	1	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	52	847	1	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711876	89711899	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GAGTAACTATTCCCAGTCAGAGGC	GAGTAACTATTCCCAGTCAGAGGC	-			P-0017973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	32	514	0	ENST00000371953.3:c.495_518delAGTAACTATTCCCAGTCAGAGGCG	p.Val166_Arg173del	p.V166_R173del	ENST00000371953	NM_000314.4	165	gGAGTAACTATTCCCAGTCAGAGGCgc/ggc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931472	131931472	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	36	531	0	ENST00000265335.6:c.2177G>T	p.Arg726Leu	p.R726L	ENST00000265335		726	cGt/cTt																																																																															
FYN	2534	MSKCC	GRCh37	6	112041107	112041107	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	56	569	0	ENST00000368678.4:c.148T>A	p.Tyr50Asn	p.Y50N	ENST00000368678		50	Tac/Aac																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0017974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	3734	871	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	295	673	0	ENST00000269305.4:c.794T>G	p.Leu265Arg	p.L265R	ENST00000269305	NM_001126112.2	265	cTg/cGg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098794	178098817	+	inframe_deletion	In_Frame_Del	DEL	AGAAATTCACCTGTCTCTTCATCT	AGAAATTCACCTGTCTCTTCATCT	-			P-0017974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	252	722	0	ENST00000397062.3:c.228_251delAGATGAAGAGACAGGTGAATTTCT	p.Asp77_Leu84del	p.D77_L84del	ENST00000397062	NM_006164.4	76	ctAGATGAAGAGACAGGTGAATTTCTc/ctc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	43	842	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	210	950	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SDHB	6390	MSKCC	GRCh37	1	17354353	17354353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	54	602	0	ENST00000375499.3:c.431G>A	p.Ser144Asn	p.S144N	ENST00000375499	NM_003000.2	144	aGc/aAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0017977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			4251	234	929	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098816	178098816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	213	944	0	ENST00000397062.3:c.229G>C	p.Asp77His	p.D77H	ENST00000397062	NM_006164.4	77	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577101	7577101	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	174	1091	3	ENST00000269305.4:c.837del	p.Arg280GlufsTer65	p.R280Efs*65	ENST00000269305	NM_001126112.2	279	ggG/gg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162749964	162749964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	175	969	0	ENST00000367921.3:c.2496G>C	p.Trp832Cys	p.W832C	ENST00000367921	NM_006182.2	832	tgG/tgC																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713543	30713543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	135	742	0	ENST00000359013.4:c.943G>A	p.Glu315Lys	p.E315K	ENST00000359013	NM_001024847.2	315	Gag/Aag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53250047	53250047	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	170	971	0	ENST00000375401.3:c.202C>T	p.Arg68Ter	p.R68*	ENST00000375401	NM_004187.3	68	Cga/Tga																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514257	69514257	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	50	832	0	ENST00000294312.3:c.424C>G	p.Pro142Ala	p.P142A	ENST00000294312	NM_005117.2	142	Ccg/Gcg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221737	36221737	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	64	978	0	ENST00000222270.7:c.5406G>C	p.Gln1802His	p.Q1802H	ENST00000222270	NM_014727.1	1802	caG/caC																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561376	9561376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	38	594	2	ENST00000353224.5:c.406G>A	p.Asp136Asn	p.D136N	ENST00000353224	NM_177990.2	136	Gat/Aat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	43	557	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	177	962	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	67	706	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220000	5220000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	40	791	0	ENST00000357368.4:c.3715G>A	p.Gly1239Ser	p.G1239S	ENST00000357368	NM_002850.3	1239	Ggc/Agc																																																																															
POLE	5426	MSKCC	GRCh37	12	133219240	133219240	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	31	868	0	ENST00000320574.5:c.4804G>A	p.Val1602Ile	p.V1602I	ENST00000320574	NM_006231.2	1602	Gtc/Atc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2131775	2131777	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0017981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	42	751	0	ENST00000219476.3:c.3794_3796delCTC	p.Pro1265del	p.P1265del	ENST00000219476	NM_000548.3	1264	CCT/-																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101199	41101199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	31	707	2	ENST00000373198.4:c.1157C>T	p.Pro386Leu	p.P386L	ENST00000373198	NM_133170.3	386	cCg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419986	41419986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	109	643	1	ENST00000373198.4:c.335G>A	p.Arg112His	p.R112H	ENST00000373198	NM_133170.3	112	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0017983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	104	602	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117888	70117888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	260	507	0	ENST00000245479.2:c.356C>A	p.Ala119Glu	p.A119E	ENST00000245479	NM_000346.3	119	gCg/gAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	117	566	1	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274704	123274704	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	129	794	0	ENST00000358487.5:c.1214A>G	p.Lys405Arg	p.K405R	ENST00000358487	NM_000141.4	405	aAg/aGg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243809254	243809254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	91	769	1	ENST00000263826.5:c.370C>A	p.Gln124Lys	p.Q124K	ENST00000263826	NM_005465.4	124	Caa/Aaa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778355	3778355	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	123	559	0	ENST00000262367.5:c.6693C>G	p.Phe2231Leu	p.F2231L	ENST00000262367	NM_004380.2	2231	ttC/ttG																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573623	48573624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0017983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	113	626	1	ENST00000342988.3:c.209_210dup	p.Cys71AsnfsTer24	p.C71Nfs*24	ENST00000342988	NM_005359.5	69	-/AA																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	81	570	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	85	811	3	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	87	677	3	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	43	525	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	106	857	1	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	65	530	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	70	706	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	69	614	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	134	1021	1	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486232	8486232	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142397137		P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	51	438	1	ENST00000356435.5:c.2585G>A	p.Arg862His	p.R862H	ENST00000356435		862	cGc/cAc																																																																															
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	103	635	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																															
CDK4	1019	MSKCC	GRCh37	12	58144446	58144446	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140644696		P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	48	536	1	ENST00000257904.6:c.625C>T	p.Arg209Cys	p.R209C	ENST00000257904	NM_000075.3	209	Cgt/Tgt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280142	66280142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	28	346	0	ENST00000273854.3:c.1547C>T	p.Thr516Met	p.T516M	ENST00000273854	NM_004439.5	516	aCg/aTg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630407	47630407	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	66	698	0	ENST00000233146.2:c.77T>C	p.Met26Thr	p.M26T	ENST00000233146	NM_000251.2	26	aTg/aCg																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127915939	127915939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	97	726	2	ENST00000373547.4:c.542G>A	p.Arg181Gln	p.R181Q	ENST00000373547	NM_002721.4	181	cGg/cAg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100462	8100462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	94	1041	4	ENST00000346208.3:c.436G>A	p.Ala146Thr	p.A146T	ENST00000346208		146	Gcc/Acc																																																																															
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	85	781	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130427	29130427	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	108	848	3	ENST00000328354.6:c.283C>T	p.Arg95Ter	p.R95*	ENST00000328354	NM_007194.3	95	Cga/Tga																																																																															
ABL1	25	MSKCC	GRCh37	9	133759752	133759752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	62	566	0	ENST00000318560.5:c.2075C>T	p.Thr692Met	p.T692M	ENST00000318560	NM_005157.4	692	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112176021	112176021	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	67	521	0	ENST00000257430.4:c.4731delA	p.Glu1577AspfsTer73	p.E1577Dfs*73	ENST00000257430	NM_000038.5	1577	gAa/ga																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798845	45798845	+	splice_region_variant,intron_variant	Splice_Region	DEL	G	G	-			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	72	730	0	ENST00000372115.3:c.347-3delC		p.X116_splice	ENST00000372115	NM_001048171.1	116																																																																																
RFWD2	64326	MSKCC	GRCh37	1	176175747	176175747	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	88	1060	0	ENST00000367669.3:c.368T>C	p.Leu123Pro	p.L123P	ENST00000367669	NM_022457.5	123	cTc/cCc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88676912	88676912	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	101	711	0	ENST00000372037.3:c.697C>T	p.Gln233Ter	p.Q233*	ENST00000372037	NM_004329.2	233	Cag/Tag																																																																															
SUFU	51684	MSKCC	GRCh37	10	104359295	104359295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	95	693	1	ENST00000369902.3:c.1016G>A	p.Arg339Gln	p.R339Q	ENST00000369902	NM_016169.3	339	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925616	114925616	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	80	1022	2	ENST00000543371.1:c.1694C>A	p.Pro565His	p.P565H	ENST00000543371	NM_001198531.1	565	cCt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424710	49424710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	65	778	1	ENST00000301067.7:c.13637G>T	p.Arg4546Met	p.R4546M	ENST00000301067	NM_003482.3	4546	aGg/aTg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43730536	43730536	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	53	610	5	ENST00000382044.4:c.3177del	p.Thr1060ProfsTer36	p.T1060Pfs*36	ENST00000382044	NM_001141980.1	1059	ccC/cc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66777380	66777380	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	99	671	1	ENST00000307102.5:c.746T>C	p.Met249Thr	p.M249T	ENST00000307102	NM_002755.3	249	aTg/aCg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	360011	360011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	98	932	1	ENST00000262320.3:c.1078G>A	p.Val360Met	p.V360M	ENST00000262320	NM_003502.3	360	Gtg/Atg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2106646	2106646	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	92	774	0	ENST00000219476.3:c.650T>C	p.Val217Ala	p.V217A	ENST00000219476	NM_000548.3	217	gTc/gCc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862845	9862845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	84	852	1	ENST00000330684.3:c.2458G>A	p.Val820Ile	p.V820I	ENST00000330684	NM_001134407.1	820	Gta/Ata																																																																															
CYLD	1540	MSKCC	GRCh37	16	50828193	50828193	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	78	679	3	ENST00000398568.2:c.2531G>A	p.Trp844Ter	p.W844*	ENST00000398568	NM_001042412.1	844	tGg/tAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991826	72991826	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	69	826	0	ENST00000268489.5:c.2219A>G	p.Asn740Ser	p.N740S	ENST00000268489	NM_006885.3	740	aAc/aGc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349003	89349003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	105	871	0	ENST00000301030.4:c.3947G>A	p.Gly1316Glu	p.G1316E	ENST00000301030	NM_001256183.1	1316	gGg/gAg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349211	89349211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755642596		P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1259	197	1470	2	ENST00000301030.4:c.3739G>A	p.Ala1247Thr	p.A1247T	ENST00000301030	NM_001256183.1	1247	Gct/Act																																																																															
NF1	4763	MSKCC	GRCh37	17	29676214	29676214	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	79	704	0	ENST00000358273.4:c.7266A>C	p.Lys2422Asn	p.K2422N	ENST00000358273	NM_001042492.2	2422	aaA/aaC																																																																															
CDK12	51755	MSKCC	GRCh37	17	37681121	37681121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	67	559	0	ENST00000447079.4:c.3290G>A	p.Gly1097Glu	p.G1097E	ENST00000447079	NM_015083.1	1097	gGg/gAg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243940	41243940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	101	849	0	ENST00000357654.3:c.3608G>A	p.Arg1203Gln	p.R1203Q	ENST00000357654	NM_007294.3	1203	cGa/cAa																																																																															
MSI2	124540	MSKCC	GRCh37	17	55752473	55752473	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145329279		P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	131	1089	2	ENST00000284073.2:c.931G>A	p.Gly311Ser	p.G311S	ENST00000284073	NM_138962.2	311	Ggc/Agc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604668	48604668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	56	449	1	ENST00000342988.3:c.1490G>A	p.Arg497His	p.R497H	ENST00000342988	NM_005359.5	497	cGc/cAc																																																																															
INSR	3643	MSKCC	GRCh37	19	7120676	7120676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	116	1009	3	ENST00000302850.5:c.3614C>T	p.Pro1205Leu	p.P1205L	ENST00000302850	NM_000208.2	1205	cCg/cTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15383645	15383645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	64	452	0	ENST00000263377.2:c.266C>T	p.Ala89Val	p.A89V	ENST00000263377	NM_058243.2	89	gCc/gTc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266904	18266904	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	49	449	0	ENST00000222254.8:c.215G>T	p.Gly72Val	p.G72V	ENST00000222254	NM_005027.3	72	gGc/gTc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965458	18965458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	66	599	0	ENST00000262803.5:c.1205C>A	p.Pro402His	p.P402H	ENST00000262803	NM_002911.3	402	cCt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211138	36211138	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	312	1321	2	ENST00000222270.7:c.889C>T	p.Arg297Ter	p.R297*	ENST00000222270	NM_014727.1	297	Cga/Tga																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52693362	52693362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	55	764	1	ENST00000322088.6:c.13G>A	p.Asp5Asn	p.D5N	ENST00000322088	NM_014225.5	5	Gac/Aac																																																																															
SRC	6714	MSKCC	GRCh37	20	36014498	36014498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	92	730	1	ENST00000358208.4:c.271G>A	p.Ala91Thr	p.A91T	ENST00000358208		91	Gcc/Acc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164799	36164799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	111	887	2	ENST00000300305.3:c.1076C>T	p.Pro359Leu	p.P359L	ENST00000300305		359	cCg/cTg																																																																															
ERG	2078	MSKCC	GRCh37	21	39817529	39817529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	99	835	0	ENST00000288319.7:c.34G>A	p.Val12Met	p.V12M	ENST00000288319	NM_182918.3	12	Gtg/Atg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44520605	44520605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	63	568	0	ENST00000291552.4:c.157C>T	p.Arg53Cys	p.R53C	ENST00000291552	NM_006758.2	53	Cgt/Tgt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873058	134873058	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	131	809	0	ENST00000398015.3:c.1362G>A	p.Trp454Ter	p.W454*	ENST00000398015	NM_004441.4	454	tgG/tgA																																																																															
TET2	54790	MSKCC	GRCh37	4	106193793	106193793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	45	394	1	ENST00000380013.4:c.4255C>T	p.Pro1419Ser	p.P1419S	ENST00000380013	NM_001127208.2	1419	Cct/Tct																																																																															
TERT	7015	MSKCC	GRCh37	5	1260608	1260608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	69	859	1	ENST00000310581.5:c.2951G>T	p.Ser984Ile	p.S984I	ENST00000310581	NM_198253.2	984	aGc/aTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1272314	1272314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	84	724	2	ENST00000310581.5:c.2368G>A	p.Val790Ile	p.V790I	ENST00000310581	NM_198253.2	790	Gtc/Atc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672975	30672975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	94	790	0	ENST00000376406.3:c.3985G>A	p.Ala1329Thr	p.A1329T	ENST00000376406	NM_014641.2	1329	Gcc/Acc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33286827	33286827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	25	588	0	ENST00000374542.5:c.2110G>A	p.Ala704Thr	p.A704T	ENST00000374542	NM_001141970.1	704	Gcc/Acc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419976	152419976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	106	658	1	ENST00000206249.3:c.1663C>T	p.Arg555Cys	p.R555C	ENST00000206249	NM_000125.3	555	Cgt/Tgt																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946152	13946152	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	74	837	0	ENST00000405192.2:c.944G>T	p.Trp315Leu	p.W315L	ENST00000405192	NM_001163147.1	315	tGg/tTg																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23539096	23539096	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	34	597	0	ENST00000380871.4:c.343A>G	p.Arg115Gly	p.R115G	ENST00000380871	NM_006167.3	115	Agg/Ggg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38148047	38148047	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	133	1030	1	ENST00000317025.8:c.3064G>T	p.Gly1022Ter	p.G1022*	ENST00000317025	NM_023034.1	1022	Gga/Tga																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741466	145741466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	123	1022	1	ENST00000428558.2:c.1037C>T	p.Ala346Val	p.A346V	ENST00000428558	NM_004260.3	346	gCc/gTc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250454	110250454	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	28	487	0	ENST00000374672.4:c.221T>C	p.Leu74Pro	p.L74P	ENST00000374672	NM_004235.4	74	cTg/cCg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139397681	139397681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	93	857	0	ENST00000277541.6:c.5120C>T	p.Ala1707Val	p.A1707V	ENST00000277541	NM_017617.3	1707	gCc/gTc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227954	53227954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	100	954	0	ENST00000375401.3:c.2360G>A	p.Arg787Gln	p.R787Q	ENST00000375401	NM_004187.3	787	cGg/cAg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53247133	53247133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	80	675	1	ENST00000375401.3:c.367G>T	p.Gly123Cys	p.G123C	ENST00000375401	NM_004187.3	123	Ggt/Tgt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411231	63411231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	92	907	0	ENST00000330258.3:c.1936C>T	p.Arg646Trp	p.R646W	ENST00000330258	NM_152424.3	646	Cgg/Tgg																																																																															
AR	367	MSKCC	GRCh37	X	66765746	66765746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	159	1435	2	ENST00000374690.3:c.758C>T	p.Ala253Val	p.A253V	ENST00000374690	NM_000044.3	253	gCg/gTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70339711	70339711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	112	981	0	ENST00000374080.3:c.380C>T	p.Thr127Met	p.T127M	ENST00000374080		127	aCg/aTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70347196	70347196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	75	673	0	ENST00000374080.3:c.2860G>A	p.Val954Ile	p.V954I	ENST00000374080		954	Gtc/Atc																																																																															
RARA	5914	MSKCC	GRCh37	17	38508752	38508754	+	missense_variant	Missense_Mutation	ONP	ACA	ACA	TCT			P-0017986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	70	701	0	ENST00000254066.5:c.800_802delACAinsTCT	p.AspIle267ValPhe	p.DI267VF	ENST00000254066	NM_000964.3	267	gACAtc/gTCTtc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0017987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	23	376	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	52	753	0	ENST00000349310.3:c.155T>G	p.Leu52Arg	p.L52R	ENST00000349310	NM_001014432.1	52	cTc/cGc																																																																															
MCL1	4170	MSKCC	GRCh37	1	150549852	150549853	+	frameshift_variant,stop_lost	Frame_Shift_Del	DEL	TA	TA	-			P-0017987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	387	639	0	ENST00000369026.2:c.1051_1052delTA	p.Ter351AlafsTer4	p.*351Afs*4	ENST00000369026	NM_021960.4	351	TAg/g																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434231	49434232	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	333	1236	0	ENST00000301067.7:c.7321dup	p.Thr2441AsnfsTer8	p.T2441Nfs*8	ENST00000301067	NM_003482.3	2441	acc/aAcc																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805694	46805694	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	218	978	0	ENST00000290295.7:c.262T>G	p.Tyr88Asp	p.Y88D	ENST00000290295	NM_006361.5	88	Tac/Gac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0017992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	40	656	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0017992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	89	692	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	73	289	1	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																															
PGR	5241	MSKCC	GRCh37	11	100922294	100922294	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	40	650	3	ENST00000325455.5:c.2218C>T	p.Arg740Ter	p.R740*	ENST00000325455	NM_001202474.3	740	Cga/Tga																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115263258	115263258	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	43	905	0	ENST00000438362.2:c.2092G>C	p.Val698Leu	p.V698L	ENST00000438362	NM_001242891.1	698	Gtc/Ctc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046663	30046663	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0017992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	47	619	0	ENST00000331968.5:c.2521-1G>T		p.X841_splice	ENST00000331968	NM_002742.2	841																																																																																
SMAD2	4087	MSKCC	GRCh37	18	45371810	45371810	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	49	562	1	ENST00000262160.6:c.1181T>C	p.Leu394Pro	p.L394P	ENST00000262160	NM_005901.5	394	cTg/cCg																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47606006	47606147	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAATATTCTGATTCTCAATTAATGTTATTTTCAAATGATTTTGATTATATTAGTATTAATTTGTATTATTCAATTTTTTTCCCCAGTATGAGAATAATGTTATCACTATTGATCTGGTTCAAAATTCTTCTCAAAAAACTCA	GAATATTCTGATTCTCAATTAATGTTATTTTCAAATGATTTTGATTATATTAGTATTAATTTGTATTATTCAATTTTTTTCCCCAGTATGAGAATAATGTTATCACTATTGATCTGGTTCAAAATTCTTCTCAAAAAACTCA	-			P-0017992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	16	99	0	ENST00000263735.4:c.556-82_615delATTCTGATTCTCAATTAATGTTATTTTCAAATGATTTTGATTATATTAGTATTAATTTGTATTATTCAATTTTTTTCCCCAGTATGAGAATAATGTTATCACTATTGATCTGGTTCAAAATTCTTCTCAAAAAACTCAGAAT		p.X186_splice	ENST00000263735	NM_002354.2	186																																																																																
EPCAM	4072	MSKCC	GRCh37	2	47606183	47606183	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	22	479	0	ENST00000263735.4:c.647T>G	p.Phe216Cys	p.F216C	ENST00000263735	NM_002354.2	216	tTt/tGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265516	152265517	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	60	691	0	ENST00000206249.3:c.974dup	p.Ile326AspfsTer7	p.I326Dfs*7	ENST00000206249	NM_000125.3	323	-/C																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0017994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	164	789	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	61	645	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	88	503	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0017994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	93	887	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38978730	38978730	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	78	467	0	ENST00000357387.3:c.776A>G	p.Asp259Gly	p.D259G	ENST00000357387	NM_152756.3	259	gAt/gGt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103506176	103506176	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	241	774	0	ENST00000355739.4:c.334A>G	p.Thr112Ala	p.T112A	ENST00000355739	NM_000123.3	112	Aca/Gca																																																																															
FANCA	2175	MSKCC	GRCh37	16	89833645	89833645	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0017994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	106	512	1	ENST00000389301.3:c.2505A>T	p.Lys835Asn	p.K835N	ENST00000389301	NM_000135.2	835	aaA/aaT																																																																															
ALK	238	MSKCC	GRCh37	2	29754866	29754866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	63	412	1	ENST00000389048.3:c.1069C>T	p.Pro357Ser	p.P357S	ENST00000389048	NM_004304.4	357	Ccc/Tcc																																																																															
MSH3	4437	MSKCC	GRCh37	5	80171592	80171592	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	92	766	0	ENST00000265081.6:c.3325A>G	p.Lys1109Glu	p.K1109E	ENST00000265081	NM_002439.4	1109	Aag/Gag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	302	878	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	130	705	2	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952006	178952006	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	124	706	1	ENST00000263967.3:c.3061T>C	p.Tyr1021His	p.Y1021H	ENST00000263967	NM_006218.2	1021	Tac/Cac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	192	951	1	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962804	2962804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	495	884	2	ENST00000396946.4:c.2104G>A	p.Glu702Lys	p.E702K	ENST00000396946	NM_032415.4	702	Gag/Aag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	166	671	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TET1	80312	MSKCC	GRCh37	10	70441157	70441157	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	181	672	1	ENST00000373644.4:c.4832delA	p.Asn1611ThrfsTer13	p.N1611Tfs*13	ENST00000373644	NM_030625.2	1609	gAa/ga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	121	689	0	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339111	65339111	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	115	715	6	ENST00000342505.4:c.425delA	p.Lys142ArgfsTer26	p.K142Rfs*26	ENST00000342505	NM_002227.2	142	aAg/ag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	150	423	1	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	127	792	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	71	330	2	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	38	231	0	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	236	846	1	ENST00000407977.2:c.349delC	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353819	15353819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	115	752	2	ENST00000263377.2:c.3061delC	p.His1021IlefsTer47	p.H1021Ifs*47	ENST00000263377	NM_058243.2	1021	Cat/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	211	683	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	308	1089	7	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	151	537	3	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	177	612	6	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
MITF	4286	MSKCC	GRCh37	3	70008521	70008521	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	199	839	1	ENST00000352241.4:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000352241	NM_198159.2	371	Cga/Tga																																																																															
INHA	3623	MSKCC	GRCh37	2	220437230	220437230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	380	1295	1	ENST00000243786.2:c.134C>T	p.Ala45Val	p.A45V	ENST00000243786	NM_002191.3	45	gCg/gTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862850	9862850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	216	929	0	ENST00000330684.3:c.2453C>T	p.Ala818Val	p.A818V	ENST00000330684	NM_001134407.1	818	gCg/gTg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372193	55372193	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753081636		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	97	264	0	ENST00000297316.4:c.883G>A	p.Val295Met	p.V295M	ENST00000297316	NM_022454.3	295	Gtg/Atg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264357	30264357	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	38	191	0	ENST00000322652.5:c.92T>C	p.Val31Ala	p.V31A	ENST00000322652	NM_015355.2	31	gTg/gCg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	245	1000	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026911	48026912	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	133	534	0	ENST00000234420.5:c.1794dup	p.Gly599ArgfsTer8	p.G599Rfs*8	ENST00000234420	NM_000179.2	597	gaa/gAaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424178	49424178	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	154	625	2	ENST00000301067.7:c.13884delC	p.Thr4629ProfsTer11	p.T4629Pfs*11	ENST00000301067	NM_003482.3	4628	ccC/cc																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518587	69518587	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs114327249		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	220	479	2	ENST00000294312.3:c.58G>A	p.Val20Met	p.V20M	ENST00000294312	NM_005117.2	20	Gtg/Atg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562577	21562577	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1395329857		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	37	91	0	ENST00000382592.4:c.1342C>T	p.Arg448Cys	p.R448C	ENST00000382592	NM_014572.2	448	Cgt/Tgt																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38616977	38616977	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	164	644	0	ENST00000299084.4:c.395delA	p.Asn132MetfsTer20	p.N132Mfs*20	ENST00000299084	NM_152594.2	130	tcA/tc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780702	9780702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	46	673	0	ENST00000377346.4:c.1504C>T	p.His502Tyr	p.H502Y	ENST00000377346	NM_005026.3	502	Cat/Tat																																																																															
PARP1	142	MSKCC	GRCh37	1	226567718	226567719	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	390	704	0	ENST00000366794.5:c.1447dup	p.Ala483GlyfsTer9	p.A483Gfs*9	ENST00000366794	NM_001618.3	483	gca/gGca																																																																															
RET	5979	MSKCC	GRCh37	10	43623652	43623652	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	125	930	0	ENST00000355710.3:c.3280A>G	p.Ser1094Gly	p.S1094G	ENST00000355710	NM_020975.4	1094	Agt/Ggt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572272	64572272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	147	614	3	ENST00000337652.1:c.1382G>A	p.Arg461His	p.R461H	ENST00000337652	NM_130803.2	461	cGc/cAc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200086	67200086	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	180	628	0	ENST00000312629.5:c.473delC	p.Thr158SerfsTer53	p.T158Sfs*53	ENST00000312629	NM_003952.2	158	aCg/ag																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200877	67200877	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	291	1157	3	ENST00000312629.5:c.870delC	p.Tyr291ThrfsTer14	p.Y291Tfs*14	ENST00000312629	NM_003952.2	289	Ccc/cc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514694	103514694	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs4150315		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	148	488	2	ENST00000355739.4:c.1195G>A	p.Glu399Lys	p.E399K	ENST00000355739	NM_000123.3	399	Gaa/Aaa																																																																															
MGA	23269	MSKCC	GRCh37	15	42003374	42003374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	181	690	5	ENST00000219905.7:c.2911C>T	p.Arg971Trp	p.R971W	ENST00000219905	NM_001164273.1	971	Cgg/Tgg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50811838	50811838	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	130	861	0	ENST00000398568.2:c.1115G>A	p.Trp372Ter	p.W372*	ENST00000398568	NM_001042412.1	372	tGg/tAg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619315	37619315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	165	501	1	ENST00000447079.4:c.991C>T	p.Arg331Trp	p.R331W	ENST00000447079	NM_015083.1	331	Cgg/Tgg																																																																															
EZH1	2145	MSKCC	GRCh37	17	40855817	40855817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	213	848	0	ENST00000428826.2:c.2039G>A	p.Arg680Gln	p.R680Q	ENST00000428826		680	cGg/cAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492739	56492739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	226	1071	0	ENST00000407977.2:c.200G>A	p.Gly67Asp	p.G67D	ENST00000407977		67	gGt/gAt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740377	58740377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	157	795	0	ENST00000305921.3:c.1282C>T	p.Pro428Ser	p.P428S	ENST00000305921	NM_003620.3	428	Cca/Tca																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593548	48593549	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	64	262	0	ENST00000342988.3:c.1304_1305delTA	p.Ile435LysfsTer4	p.I435Kfs*4	ENST00000342988	NM_005359.5	433	gcATat/gcat																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622111	1622111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	252	872	2	ENST00000344749.5:c.764C>T	p.Pro255Leu	p.P255L	ENST00000344749	NM_001136139.2	255	cCg/cTg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4123856	4123856	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	82	288	0	ENST00000262948.5:c.17A>C	p.Lys6Thr	p.K6T	ENST00000262948	NM_030662.3	6	aAg/aCg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610072	10610073	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	C			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	233	921	0	ENST00000171111.5:c.637dup	p.Glu213GlyfsTer137	p.E213Gfs*137	ENST00000171111	NM_203500.1	213	gag/gGag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223328	36223328	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	371	1393	5	ENST00000222270.7:c.5882delC	p.Pro1961LeufsTer26	p.P1961Lfs*26	ENST00000222270	NM_014727.1	1960	Ccc/cc																																																																															
ALK	238	MSKCC	GRCh37	2	29416374	29416374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	273	1008	2	ENST00000389048.3:c.4579C>T	p.Pro1527Ser	p.P1527S	ENST00000389048	NM_004304.4	1527	Cca/Tca																																																																															
SOS1	6654	MSKCC	GRCh37	2	39262541	39262541	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	76	780	0	ENST00000402219.2:c.965T>C	p.Leu322Pro	p.L322P	ENST00000402219	NM_005633.3	322	cTt/cCt																																																																															
TOP1	7150	MSKCC	GRCh37	20	39721180	39721180	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	198	816	0	ENST00000361337.2:c.686delC	p.Pro229HisfsTer19	p.P229Hfs*19	ENST00000361337	NM_003286.2	228	gCc/gc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026114	71026114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	175	600	0	ENST00000318789.4:c.1508G>T	p.Arg503Leu	p.R503L	ENST00000318789	NM_032682.5	503	cGa/cTa																																																																															
BCL6	604	MSKCC	GRCh37	3	187444543	187444543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	182	675	2	ENST00000232014.4:c.1684G>A	p.Ala562Thr	p.A562T	ENST00000232014	NM_001130845.1	562	Gcc/Acc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803419	1803419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	263	807	0	ENST00000260795.2:c.688G>A	p.Val230Met	p.V230M	ENST00000260795		230	Gtg/Atg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201760	66201760	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	41	869	0	ENST00000273854.3:c.2742C>A	p.Cys914Ter	p.C914*	ENST00000273854	NM_004439.5	914	tgC/tgA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557846	187557848	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	149	621	0	ENST00000441802.2:c.3863_3865delCCT	p.Ser1288del	p.S1288del	ENST00000441802	NM_005245.3	1288	tCCTac/tac																																																																															
TERT	7015	MSKCC	GRCh37	5	1294672	1294672	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	66	246	4	ENST00000310581.5:c.329G>C	p.Gly110Ala	p.G110A	ENST00000310581	NM_198253.2	110	gGc/gCc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79974797	79974797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	106	837	1	ENST00000265081.6:c.1225G>A	p.Ala409Thr	p.A409T	ENST00000265081	NM_002439.4	409	Gct/Act																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564506	86564506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	124	419	0	ENST00000274376.6:c.238G>A	p.Ala80Thr	p.A80T	ENST00000274376	NM_002890.2	80	Gca/Aca																																																																															
RAD50	10111	MSKCC	GRCh37	5	131911503	131911503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	110	677	0	ENST00000265335.6:c.248G>A	p.Arg83His	p.R83H	ENST00000265335		83	cGt/cAt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522424	176522424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	246	943	2	ENST00000292408.4:c.1613G>T	p.Gly538Val	p.G538V	ENST00000292408	NM_213647.1	538	gGt/gTt																																																																															
ABL1	25	MSKCC	GRCh37	9	133759377	133759377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	226	950	0	ENST00000318560.5:c.1700C>T	p.Ala567Val	p.A567V	ENST00000318560	NM_005157.4	567	gCc/gTc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400074	139400074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	296	1147	0	ENST00000277541.6:c.4274G>A	p.Cys1425Tyr	p.C1425Y	ENST00000277541	NM_017617.3	1425	tGc/tAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405141	139405141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	239	851	2	ENST00000277541.6:c.2704C>T	p.Arg902Cys	p.R902C	ENST00000277541	NM_017617.3	902	Cgc/Tgc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0018008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	501	403	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1206165503		P-0018008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	323	585	0	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205157	61205157	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144867876		P-0018008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	195	574	0	ENST00000301761.2:c.97C>T	p.Arg33Cys	p.R33C	ENST00000301761	NM_017841.2	33	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	69	545	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0018012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	34	307	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1184	83	640	0	ENST00000269305.4:c.400T>G	p.Phe134Val	p.F134V	ENST00000269305	NM_001126112.2	134	Ttt/Gtt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0018014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	368	525	1	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	200	438	0	ENST00000269305.4:c.733G>C	p.Gly245Arg	p.G245R	ENST00000269305	NM_001126112.2	245	Ggc/Cgc																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154363	2154363	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	186	573	0	ENST00000434045.2:c.565C>G	p.Leu189Val	p.L189V	ENST00000434045	NM_001127598.1	189	Ctc/Gtc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15995347	15995347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	126	321	0	ENST00000268712.3:c.2846C>T	p.Pro949Leu	p.P949L	ENST00000268712	NM_006311.3	949	cCa/cTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220448	1220448	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	224	617	0	ENST00000326873.7:c.541A>T	p.Asn181Tyr	p.N181Y	ENST00000326873	NM_000455.4	181	Aac/Tac																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52597437	52597437	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	195	487	0	ENST00000394830.3:c.3873delT	p.Phe1291LeufsTer4	p.F1291Lfs*4	ENST00000394830	NM_018313.4	1291	ttT/tt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0018015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	136	482	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	380	672	1	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212392	36212392	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1094	156	605	0	ENST00000222270.7:c.2143G>T	p.Val715Phe	p.V715F	ENST00000222270	NM_014727.1	715	Gtt/Ttt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266072	41266131	+	inframe_deletion	In_Frame_Del	DEL	TCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGC	TCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGC	-			P-0018015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	185	326	0	ENST00000349496.5:c.71_130delACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTC	p.His24_Ala43del	p.H24_A43del	ENST00000349496	NM_001904.3	23	agTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCt/agt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884875	134884875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	110	429	0	ENST00000398015.3:c.1651G>A	p.Val551Met	p.V551M	ENST00000398015	NM_004441.4	551	Gtg/Atg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49924790	49924790	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	235	543	0	ENST00000296474.3:c.4153G>C	p.Gly1385Arg	p.G1385R	ENST00000296474	NM_002447.2	1385	Ggg/Cgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971023	21971023	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	107	296	0	ENST00000304494.5:c.335G>C	p.Arg112Pro	p.R112P	ENST00000304494	NM_000077.4	112	cGt/cCt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	87	265	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	187	561	0	ENST00000269305.4:c.377A>C	p.Tyr126Ser	p.Y126S	ENST00000269305	NM_001126112.2	126	tAc/tCc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65321308	65321308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	148	469	0	ENST00000342505.4:c.1532G>A	p.Gly511Asp	p.G511D	ENST00000342505	NM_002227.2	511	gGt/gAt																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400776	72400776	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	68	231	0	ENST00000357731.5:c.395A>T	p.His132Leu	p.H132L	ENST00000357731	NM_173808.2	132	cAt/cTt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724601	162724601	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	128	377	0	ENST00000367921.3:c.373G>C	p.Asp125His	p.D125H	ENST00000367921	NM_006182.2	125	Gat/Cat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953643	32953643	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	60	391	1	ENST00000380152.3:c.8944A>T	p.Lys2982Ter	p.K2982*	ENST00000380152		2982	Aaa/Taa																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346127	89346127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	31	100	0	ENST00000301030.4:c.6823G>T	p.Ala2275Ser	p.A2275S	ENST00000301030	NM_001256183.1	2275	Gcc/Tcc																																																																															
NF1	4763	MSKCC	GRCh37	17	29654623	29654623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	52	335	0	ENST00000358273.4:c.5375G>C	p.Cys1792Ser	p.C1792S	ENST00000358273	NM_001042492.2	1792	tGc/tCc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39609343	39609343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	128	358	0	ENST00000262039.4:c.1645G>T	p.Val549Leu	p.V549L	ENST00000262039	NM_002647.2	549	Gta/Tta																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299941	15299941	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	140	416	0	ENST00000263388.2:c.1237G>T	p.Gly413Cys	p.G413C	ENST00000263388	NM_000435.2	413	Ggc/Tgc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464457	25464457	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	124	389	0	ENST00000264709.3:c.2056delG	p.Asp686ThrfsTer19	p.D686Tfs*19	ENST00000264709	NM_175629.2	686	Gac/ac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790003	40790003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	100	349	1	ENST00000373198.4:c.2728G>A	p.Glu910Lys	p.E910K	ENST00000373198	NM_133170.3	910	Gag/Aag																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664968	138664968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	86	323	2	ENST00000330315.3:c.597C>A	p.Phe199Leu	p.F199L	ENST00000330315	NM_023067.3	199	ttC/ttA																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332874	152332874	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	77	336	0	ENST00000206249.3:c.1180C>G	p.Arg394Gly	p.R394G	ENST00000206249	NM_000125.3	394	Cgc/Ggc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509542	106509542	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	45	461	0	ENST00000359195.3:c.1536C>G	p.Asn512Lys	p.N512K	ENST00000359195	NM_002649.2	512	aaC/aaG																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151882675	151882675	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	122	325	0	ENST00000262189.6:c.5050A>T	p.Lys1684Ter	p.K1684*	ENST00000262189	NM_170606.2	1684	Aaa/Taa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8331692	8331692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	123	366	0	ENST00000356435.5:c.5424G>T	p.Trp1808Cys	p.W1808C	ENST00000356435		1808	tgG/tgT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0018022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	536	427	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138384011	138384011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	223	379	0	ENST00000289153.2:c.2539C>T	p.Arg847Cys	p.R847C	ENST00000289153	NM_006219.2	847	Cgc/Tgc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104377179	104377179	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1239	127	554	0	ENST00000369902.3:c.1290G>C	p.Trp430Cys	p.W430C	ENST00000369902	NM_016169.3	430	tgG/tgC																																																																															
MGA	23269	MSKCC	GRCh37	15	41989202	41989202	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	248	393	0	ENST00000219905.7:c.1994T>G	p.Phe665Cys	p.F665C	ENST00000219905	NM_001164273.1	665	tTt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579894	7579894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	89	417	0	ENST00000269305.4:c.19G>A	p.Asp7Asn	p.D7N	ENST00000269305	NM_001126112.2	7	Gat/Aat																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688761	47688761	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1157	212	342	0	ENST00000347630.2:c.539A>C	p.Lys180Thr	p.K180T	ENST00000347630	NM_001007230.1	180	aAg/aCg																																																																															
APC	324	MSKCC	GRCh37	5	112175163	112175163	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	81	215	0	ENST00000257430.4:c.3872A>G	p.Gln1291Arg	p.Q1291R	ENST00000257430	NM_000038.5	1291	cAg/cGg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0018029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	197	395	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925711	114925711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	35	348	0	ENST00000543371.1:c.1789G>A	p.Val597Ile	p.V597I	ENST00000543371	NM_001198531.1	597	Gtc/Atc																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61205316	61205321	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CTTAGG	CTTAGG	-			P-0018029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	66	343	0	ENST00000301761.2:c.256_260+1delCTTAGG		p.X86_splice	ENST00000301761	NM_017841.2	86																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	610	444	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259442	55259442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	437	291	1	ENST00000275493.2:c.2500G>T	p.Val834Leu	p.V834L	ENST00000275493	NM_005228.3	834	Gtg/Ttg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176176022	176176023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	81	398	0	ENST00000367669.3:c.92dupT	p.Leu31PhefsTer47	p.L31Ffs*47	ENST00000367669	NM_022457.5	31	tta/ttTa																																																																															
ATM	472	MSKCC	GRCh37	11	108121466	108121466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	47	207	0	ENST00000278616.4:c.1274C>T	p.Ala425Val	p.A425V	ENST00000278616	NM_000051.3	425	gCa/gTa																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217443	7217450	+	frameshift_variant	Frame_Shift_Del	DEL	TGCTGGTA	TGCTGGTA	-			P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	117	320	0	ENST00000380728.2:c.346_353delTACCAGCA	p.Tyr116GlufsTer30	p.Y116Efs*30	ENST00000380728		116	TACCAGCAg/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7576849	7576872	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTACCTGAAGGGTGAAATATTCTC	GTACCTGAAGGGTGAAATATTCTC	TT			P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	78	394	3	ENST00000269305.4:c.974_993+4delGAGAATATTTCACCCTTCAGGTACinsAA		p.X325_splice	ENST00000269305	NM_001126112.2	325																																																																																
NF1	4763	MSKCC	GRCh37	17	29556347	29556347	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	271	383	0	ENST00000358273.4:c.2714A>C	p.Asn905Thr	p.N905T	ENST00000358273	NM_001042492.2	905	aAc/aCc																																																																															
NF1	4763	MSKCC	GRCh37	17	29664430	29664430	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	130	368	0	ENST00000358273.4:c.6472T>A	p.Leu2158Ile	p.L2158I	ENST00000358273	NM_001042492.2	2158	Tta/Ata																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128050254	128050254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	81	363	1	ENST00000285398.2:c.403G>A	p.Asp135Asn	p.D135N	ENST00000285398	NM_000122.1	135	Gac/Aac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259262	89259262	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	58	274	0	ENST00000336596.2:c.406C>G	p.Arg136Gly	p.R136G	ENST00000336596	NM_005233.5	136	Cga/Gga																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417849	138417849	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	251	497	0	ENST00000289153.2:c.1670T>C	p.Leu557Pro	p.L557P	ENST00000289153	NM_006219.2	557	cTt/cCt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673530	30673530	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	94	497	0	ENST00000376406.3:c.3430C>T	p.Gln1144Ter	p.Q1144*	ENST00000376406	NM_014641.2	1144	Cag/Tag																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023257	150023257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	184	293	0	ENST00000253339.5:c.6G>C	p.Lys2Asn	p.K2N	ENST00000253339		2	aaG/aaC																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8338979	8338979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	385	423	0	ENST00000356435.5:c.5322G>T	p.Met1774Ile	p.M1774I	ENST00000356435		1774	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577084	7577084	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	538	619	1	ENST00000269305.4:c.854A>T	p.Glu285Val	p.E285V	ENST00000269305	NM_001126112.2	285	gAg/gTg																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99823108	99823108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	90	301	0	ENST00000280892.6:c.104C>T	p.Pro35Leu	p.P35L	ENST00000280892	NM_001130678.1	35	cCg/cTg																																																																															
TP63	8626	MSKCC	GRCh37	3	189582169	189582169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	148	392	1	ENST00000264731.3:c.728G>A	p.Arg243Gln	p.R243Q	ENST00000264731	NM_003722.4	243	cGg/cAg																																																																															
RB1	5925	MSKCC	GRCh37	13	48923137	48923137	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	94	356	0	ENST00000267163.4:c.585G>C	p.Trp195Cys	p.W195C	ENST00000267163	NM_000321.2	195	tgG/tgC																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029375	14029375	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	125	328	0	ENST00000311895.7:c.1586T>A	p.Ile529Asn	p.I529N	ENST00000311895	NM_005236.2	529	aTt/aAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29657409	29657409	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	394	583	1	ENST00000358273.4:c.5706delC	p.Asn1903ThrfsTer22	p.N1903Tfs*22	ENST00000358273	NM_001042492.2	1902	gCc/gc																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805780	46805780	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	163	405	0	ENST00000290295.7:c.176C>G	p.Pro59Arg	p.P59R	ENST00000290295	NM_006361.5	59	cCg/cGg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222016	2222016	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	191	511	0	ENST00000398665.3:c.2848G>C	p.Ala950Pro	p.A950P	ENST00000398665	NM_032482.2	950	Gcg/Ccg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152061	11152061	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	205	441	1	ENST00000344626.4:c.4249A>T	p.Ser1417Cys	p.S1417C	ENST00000344626	NM_003072.3	1417	Agc/Tgc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467132	25467132	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	165	470	0	ENST00000264709.3:c.1743G>A	p.Trp581Ter	p.W581*	ENST00000264709	NM_175629.2	581	tgG/tgA																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143003334	143003334	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	470	455	0	ENST00000262992.4:c.2492G>T	p.Cys831Phe	p.C831F	ENST00000262992	NM_001101669.1	831	tGc/tTc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871231	35871231	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	233	401	0	ENST00000303115.3:c.453T>A	p.Asn151Lys	p.N151K	ENST00000303115	NM_002185.3	151	aaT/aaA																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250820	26250821	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCGTGCGTGCC			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	61	135	0	ENST00000446824.2:c.3_13dupGGCACGCACGA	p.Lys5ArgfsTer36	p.K5Rfs*36	ENST00000446824	NM_021018.2	5	aag/aGGCACGCACGAag																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729756	41729756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	201	274	1	ENST00000242208.4:c.773G>T	p.Gly258Val	p.G258V	ENST00000242208	NM_002192.2	258	gGc/gTc																																																																															
SMO	6608	MSKCC	GRCh37	7	128846021	128846021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	371	454	0	ENST00000249373.3:c.951C>G	p.Ile317Met	p.I317M	ENST00000249373	NM_005631.4	317	atC/atG																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151848043	151848043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	133	375	0	ENST00000262189.6:c.12716G>A	p.Ser4239Asn	p.S4239N	ENST00000262189	NM_170606.2	4239	aGt/aAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038760	47038760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	181	265	0	ENST00000329236.7:c.536delA	p.Gln179ArgfsTer10	p.Q179Rfs*10	ENST00000329236	NM_001204466.1	179	cAg/cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	60	880	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732996	30732996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934869		P-0018036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	31	521	0	ENST00000359013.4:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000359013	NM_001024847.2	562	Cgc/Tgc																																																																															
AR	367	MSKCC	GRCh37	X	66766357	66766395	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	-			P-0018036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	21	183	0	ENST00000374690.3:c.1382_1420delGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG	p.Gly461_Gly473del	p.G461_G473del	ENST00000374690	NM_000044.3	457	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC/-																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170013719	170013719	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1388201066		P-0018036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	40	735	1	ENST00000295797.4:c.1438C>T	p.Arg480Cys	p.R480C	ENST00000295797	NM_002740.5	480	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024010	27024016	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCTC	GCCGCTC	-			P-0018036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	10	156	0	ENST00000324856.7:c.1119_1125delGCTCGCC	p.Leu374GlyfsTer15	p.L374Gfs*15	ENST00000324856	NM_006015.4	372	caGCCGCTC/ca																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022859	12022959	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTCCCCGCCTGAAGAGCACGCCATGCCCATTGGGAGAATAGCAGGTGAGTGAGTTCCCCTCTCGCCGCTCCAGCATCATGGGGACCTGACAAAGTCCCAC	TCTCCCCGCCTGAAGAGCACGCCATGCCCATTGGGAGAATAGCAGGTGAGTGAGTTCCCCTCTCGCCGCTCCAGCATCATGGGGACCTGACAAAGTCCCAC	-			P-0018036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	44	777	1	ENST00000396373.4:c.972_1009+63delGCCTGAAGAGCACGCCATGCCCATTGGGAGAATAGCAGGTGAGTGAGTTCCCCTCTCGCCGCTCCAGCATCATGGGGACCTGACAAAGTCCCACTCTCCCC		p.X324_splice	ENST00000396373	NM_001987.4	324																																																																																
NCOR1	9611	MSKCC	GRCh37	17	15950385	15950386	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0018036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	36	820	0	ENST00000268712.3:c.6557_6558dup	p.Ser2187GlyfsTer3	p.S2187Gfs*3	ENST00000268712	NM_006311.3	2186	-/GG																																																																															
SRC	6714	MSKCC	GRCh37	20	36031215	36031215	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	27	755	0	ENST00000358208.4:c.1334A>T	p.Lys445Met	p.K445M	ENST00000358208		445	aAg/aTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729874	30729874	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0018036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	27	428	0	ENST00000359013.4:c.1472-2A>C		p.X491_splice	ENST00000359013	NM_001024847.2	491																																																																																
RBM10	8241	MSKCC	GRCh37	X	47045136	47045136	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	30	812	0	ENST00000329236.7:c.2143C>T	p.Arg715Ter	p.R715*	ENST00000329236	NM_001204466.1	715	Cga/Tga																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645977	67645977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	53	933	0	ENST00000264010.4:c.905C>T	p.Ala302Val	p.A302V	ENST00000264010	NM_006565.3	302	gCa/gTa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584602	48584602	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	126	816	0	ENST00000342988.3:c.775A>T	p.Thr259Ser	p.T259S	ENST00000342988	NM_005359.5	259	Act/Tct																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984723	72984723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	171	782	0	ENST00000268489.5:c.2861C>T	p.Thr954Met	p.T954M	ENST00000268489	NM_006885.3	954	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577523	7577523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	204	730	0	ENST00000269305.4:c.758C>T	p.Thr253Ile	p.T253I	ENST00000269305	NM_001126112.2	253	aCc/aTc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530091	212530091	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	152	592	4	ENST00000342788.4:c.1828C>A	p.Pro610Thr	p.P610T	ENST00000342788	NM_005235.2	610	Cca/Aca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549384	187549409	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAACGGCTGCCGATTCATAAACCC	GCCAACGGCTGCCGATTCATAAACCC	-			P-0018043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	139	955	0	ENST00000441802.2:c.4709_4734delGGGTTTATGAATCGGCAGCCGTTGGC	p.Arg1570LeufsTer18	p.R1570Lfs*18	ENST00000441802	NM_005245.3	1570	cGGGTTTATGAATCGGCAGCCGTTGGC/c																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873595	35873595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	85	506	0	ENST00000303115.3:c.551C>A	p.Ser184Tyr	p.S184Y	ENST00000303115	NM_002185.3	184	tCc/tAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046172	69046440	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTTTTCACATGCGTGAGTTTAGTGAAAAGATGAAATGCTAGTGAATGTAGATGCTGAACGCATTGGTTTTCACCATCTGCAACATTTTTCGAAGCATTCTCTATGTTCTCTTTGATCACAGATAGTGAGACACAGCTCCGTAGAGACATGGTTTTCTGCCAGACTCTTGTGGCCACTGTCTGTGCCTTCTCTGAGCAGCTCATGGCGGCCTTGAACCAGATGTTTGACAACAGCAAGGAAAATGAGATGGAAACTTGGGAAGCCAGCA	ATTTTTCACATGCGTGAGTTTAGTGAAAAGATGAAATGCTAGTGAATGTAGATGCTGAACGCATTGGTTTTCACCATCTGCAACATTTTTCGAAGCATTCTCTATGTTCTCTTTGATCACAGATAGTGAGACACAGCTCCGTAGAGACATGGTTTTCTGCCAGACTCTTGTGGCCACTGTCTGTGCCTTCTCTGAGCAGCTCATGGCGGCCTTGAACCAGATGTTTGACAACAGCAAGGAAAATGAGATGGAAACTTGGGAAGCCAGCA	-			P-0018043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	47	55	0	ENST00000288368.4:c.3767-122_3913delATTTTTCACATGCGTGAGTTTAGTGAAAAGATGAAATGCTAGTGAATGTAGATGCTGAACGCATTGGTTTTCACCATCTGCAACATTTTTCGAAGCATTCTCTATGTTCTCTTTGATCACAGATAGTGAGACACAGCTCCGTAGAGACATGGTTTTCTGCCAGACTCTTGTGGCCACTGTCTGTGCCTTCTCTGAGCAGCTCATGGCGGCCTTGAACCAGATGTTTGACAACAGCAAGGAAAATGAGATGGAAACTTGGGAAGCCAGCA		p.X1256_splice	ENST00000288368	NM_024870.2	1256																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21974679	21974679	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0018043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	135	690	1	ENST00000304494.5:c.148C>A	p.Gln50Lys	p.Q50K	ENST00000304494	NM_000077.4	50	Cag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21994285	21994285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	151	786	1	ENST00000361570.3:c.169G>T	p.Gly57Cys	p.G57C	ENST00000361570	NM_058195.3	57	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0018044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	442	887	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
NBN	4683	MSKCC	GRCh37	8	90995027	90995028	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0018044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1692	126	811	0	ENST00000265433.3:c.93_94delTG	p.Ala32HisfsTer4	p.A32Hfs*4	ENST00000265433	NM_002485.4	31	tgTGcc/tgcc																																																																															
MPL	4352	MSKCC	GRCh37	1	43803485	43803525	+	coding_sequence_variant,5_prime_UTR_variant	In_Frame_Del	DEL	GGATGGGCTAAGGCAGGCACACAGTGGCGGAGAAGATGCCC	GGATGGGCTAAGGCAGGCACACAGTGGCGGAGAAGATGCCC	AGCCT			P-0018044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	44	792	4	ENST00000372470.3:c.-35_6delGGATGGGCTAAGGCAGGCACACAGTGGCGGAGAAGATGCCCinsAGCCT		p.*12*	ENST00000372470	NM_005373.2	12																																																																																
JAK1	3716	MSKCC	GRCh37	1	65306961	65306983	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTTCAAAATGTGTGGGGTCCA	CTTTTCAAAATGTGTGGGGTCCA	-			P-0018044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	201	723	0	ENST00000342505.4:c.2594_2616delTGGACCCCACACATTTTGAAAAG	p.Val865AlafsTer8	p.V865Afs*8	ENST00000342505	NM_002227.2	865	gTGGACCCCACACATTTTGAAAAG/g																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434329	121434358	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCTTCCCCTCGTAGGTCTCAGCAGCTGGG	GGCTTCCCCTCGTAGGTCTCAGCAGCTGGG	-			P-0018044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	227	735	0	ENST00000257555.6:c.1108-12_1125delTTCCCCTCGTAGGTCTCAGCAGCTGGGGGC		p.X370_splice	ENST00000257555		370																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602822	10602822	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	465	988	1	ENST00000171111.5:c.756G>T	p.Trp252Cys	p.W252C	ENST00000171111	NM_203500.1	252	tgG/tgT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221267	36221267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	447	1021	0	ENST00000222270.7:c.5101G>A	p.Asp1701Asn	p.D1701N	ENST00000222270	NM_014727.1	1701	Gat/Aat																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140354	50140354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	303	706	0	ENST00000246792.3:c.187G>A	p.Glu63Lys	p.E63K	ENST00000246792	NM_006270.3	63	Gag/Aag																																																																															
SRC	6714	MSKCC	GRCh37	20	36022681	36022681	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0018044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	258	648	4	ENST00000358208.4:c.553+1G>T		p.X185_splice	ENST00000358208		185																																																																																
U2AF1	7307	MSKCC	GRCh37	21	44514587	44514587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	227	552	2	ENST00000291552.4:c.569G>A	p.Arg190His	p.R190H	ENST00000291552	NM_006758.2	190	cGc/cAc																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182683497	182683497	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	401	823	1	ENST00000292782.4:c.48G>T	p.Met16Ile	p.M16I	ENST00000292782	NM_020640.2	16	atG/atT																																																																															
MSH3	4437	MSKCC	GRCh37	5	79968073	79968073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	320	756	0	ENST00000265081.6:c.803G>A	p.Arg268Gln	p.R268Q	ENST00000265081	NM_002439.4	268	cGa/cAa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948731	71948732	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	A			P-0018044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	307	818	0	ENST00000298229.2:c.3443_3444delGCinsA	p.Gly1148AspfsTer54	p.G1148Dfs*54	ENST00000298229	NM_001567.3	1148	gGC/gA																																																																															
CENPA	1058	MSKCC	GRCh37	2	27015052	27015052	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	37	713	1	ENST00000335756.4:c.154C>T	p.Arg52Ter	p.R52*	ENST00000335756	NM_001809.3	52	Cga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1220493	1220493	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	74	794	1	ENST00000326873.7:c.586G>T	p.Gly196Cys	p.G196C	ENST00000326873	NM_000455.4	196	Ggc/Tgc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117448	115117448	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	47	587	1	ENST00000257566.3:c.726G>T	p.Leu242Phe	p.L242F	ENST00000257566	NM_016569.3	242	ttG/ttT																																																																															
FLT1	2321	MSKCC	GRCh37	13	28891720	28891720	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	67	662	1	ENST00000282397.4:c.3301C>A	p.Pro1101Thr	p.P1101T	ENST00000282397	NM_002019.4	1101	Cca/Aca																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348143	89348143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	35	845	1	ENST00000301030.4:c.4807G>A	p.Glu1603Lys	p.E1603K	ENST00000301030	NM_001256183.1	1603	Gag/Aag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356356	66356356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	62	711	0	ENST00000273854.3:c.1141G>T	p.Ala381Ser	p.A381S	ENST00000273854	NM_004439.5	381	Gct/Tct																																																																															
CARD11	84433	MSKCC	GRCh37	7	2951832	2951832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	234	822	0	ENST00000396946.4:c.3118G>T	p.Ala1040Ser	p.A1040S	ENST00000396946	NM_032415.4	1040	Gcc/Tcc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933376	39933376	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	41	776	2	ENST00000378444.4:c.1223G>T	p.Gly408Val	p.G408V	ENST00000378444	NM_001123385.1	408	gGg/gTg																																																																															
AR	367	MSKCC	GRCh37	X	66766410	66766410	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	11	231	0	ENST00000374690.3:c.1422G>T	p.Glu474Asp	p.E474D	ENST00000374690	NM_000044.3	474	gaG/gaT																																																																															
BRAF	673	MSKCC	GRCh37	7	140624467	140624467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	14	246	1	ENST00000288602.6:c.37G>A	p.Glu13Lys	p.E13K	ENST00000288602	NM_004333.4	13	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0018052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	155	353	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115719	8115720	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0018052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	186	482	0	ENST00000346208.3:c.1066_1067delAT	p.Met356GlufsTer14	p.M356Efs*14	ENST00000346208		355	acTAtg/actg																																																																															
CBFB	865	MSKCC	GRCh37	16	67070644	67070645	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	81	231	0	ENST00000412916.2:c.268_269insT	p.Arg90MetfsTer26	p.R90Mfs*26	ENST00000412916		90	aga/aTga																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216741	7216741	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	38	331	0	ENST00000380728.2:c.682C>T	p.Gln228Ter	p.Q228*	ENST00000380728		228	Cag/Tag																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665213	138665213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	49	712	0	ENST00000330315.3:c.352G>A	p.Glu118Lys	p.E118K	ENST00000330315	NM_023067.3	118	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0018053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	127	475	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458718	120458766	+	frameshift_variant	Frame_Shift_Del	DEL	AGGCTGCATTTCATGAAGGTTAGAAAAAGATAGTGCATGCTGGGCATGG	AGGCTGCATTTCATGAAGGTTAGAAAAAGATAGTGCATGCTGGGCATGG	-			P-0018053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	104	333	0	ENST00000256646.2:c.6579_6627delCCATGCCCAGCATGCACTATCTTTTTCTAACCTTCATGAAATGCAGCCT	p.His2194TrpfsTer12	p.H2194Wfs*12	ENST00000256646	NM_024408.3	2193	gtCCATGCCCAGCATGCACTATCTTTTTCTAACCTTCATGAAATGCAGCCT/gt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778218	3778231	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGCCCCATCTG	GGCTGCCCCATCTG	-			P-0018053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	103	459	0	ENST00000262367.5:c.6817_6830delCAGATGGGGCAGCC	p.Gln2273GlyfsTer63	p.Q2273Gfs*63	ENST00000262367	NM_004380.2	2273	CAGATGGGGCAGCCg/g																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130469	29130469	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	255	481	0	ENST00000328354.6:c.241G>T	p.Glu81Ter	p.E81*	ENST00000328354	NM_007194.3	81	Gag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151927360	151927360	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	11	76	0	ENST00000262189.6:c.2816C>G	p.Ser939Cys	p.S939C	ENST00000262189	NM_170606.2	939	tCt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0018061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	264	531	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2215878	2215878	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0018061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1162	103	666	0	ENST00000326181.6:c.82-2A>G		p.X28_splice	ENST00000326181	NM_032271.2	28																																																																																
TRAF7	84231	MSKCC	GRCh37	16	2215884	2215884	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1202	105	682	0	ENST00000326181.6:c.86G>C	p.Arg29Thr	p.R29T	ENST00000326181	NM_032271.2	29	aGa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578274	7578288	+	protein_altering_variant,splice_region_variant	In_Frame_Del	DEL	TGAGGAGGGGCCAGA	TGAGGAGGGGCCAGA	CCCTCG			P-0018061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	72	582	4	ENST00000269305.4:c.561_575delTCTGGCCCCTCCTCAinsCGAGGG	p.Leu188_Gln192delinsGluGly	p.L188_Q192delinsEG	ENST00000269305	NM_001126112.2	187	ggTCTGGCCCCTCCTCAg/ggCGAGGGg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974762	21974762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	32	174	0	ENST00000304494.5:c.65G>C	p.Arg22Pro	p.R22P	ENST00000304494	NM_000077.4	22	cGg/cCg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	201	685	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	563	808	0	ENST00000269305.4:c.809T>C	p.Phe270Ser	p.F270S	ENST00000269305	NM_001126112.2	270	tTt/tCt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264271	46264271	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	118	412	0	ENST00000371998.3:c.1318G>T	p.Ala440Ser	p.A440S	ENST00000371998		440	Gct/Tct																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411774	63411774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	197	459	0	ENST00000330258.3:c.1393C>T	p.Pro465Ser	p.P465S	ENST00000330258	NM_152424.3	465	Ccc/Tcc																																																																															
CDH1	999	MSKCC	GRCh37	16	68835596	68835596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	207	599	0	ENST00000261769.5:c.187C>T	p.Arg63Ter	p.R63*	ENST00000261769	NM_004360.3	63	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	221	767	2	ENST00000269571.5:c.2329G>C	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ctg																																																																															
PARP1	142	MSKCC	GRCh37	1	226549745	226549745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	282	656	0	ENST00000366794.5:c.2888G>A	p.Ser963Asn	p.S963N	ENST00000366794	NM_001618.3	963	aGt/aAt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120823	115120838	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCAGGGCGCCCGGC	GGCCAGGGCGCCCGGC	-			P-0018071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	139	393	0	ENST00000257566.3:c.168_183delGCCGGGCGCCCTGGCC	p.Pro57SerfsTer26	p.P57Sfs*26	ENST00000257566	NM_016569.3	56	ctGCCGGGCGCCCTGGCC/ct																																																																															
ATR	545	MSKCC	GRCh37	3	142281463	142281463	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	281	857	0	ENST00000350721.4:c.781C>G	p.Leu261Val	p.L261V	ENST00000350721	NM_001184.3	261	Cta/Gta																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526210	31526210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	242	841	0	ENST00000344624.3:c.830G>T	p.Arg277Leu	p.R277L	ENST00000344624		277	cGc/cTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	76	519	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984744	11984745	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0018073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	56	387	0	ENST00000353533.5:c.292_293dupAC	p.Ala99LeufsTer5	p.A99Lfs*5	ENST00000353533	NM_003010.3	97	ttc/ttCAc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983743	15983743	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	82	487	1	ENST00000268712.3:c.3379C>T	p.Gln1127Ter	p.Q1127*	ENST00000268712	NM_006311.3	1127	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	431	850	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520009		P-0018075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	224	640	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057520005		P-0018075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	514	908	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																															
APC	324	MSKCC	GRCh37	5	112175438	112175439	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0018075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	165	371	0	ENST00000257430.4:c.4147_4148delAT	p.Met1383ValfsTer2	p.M1383Vfs*2	ENST00000257430	NM_000038.5	1383	ATg/g																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259406	16259406	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	149	488	0	ENST00000375759.3:c.6671A>G	p.Asn2224Ser	p.N2224S	ENST00000375759	NM_015001.2	2224	aAt/aGt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625105	69625105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	161	549	0	ENST00000334134.2:c.688C>G	p.Leu230Val	p.L230V	ENST00000334134	NM_005247.2	230	Ctg/Gtg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001964	29001964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	217	646	1	ENST00000282397.4:c.1201G>T	p.Gly401Trp	p.G401W	ENST00000282397	NM_002019.4	401	Ggg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	246	743	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0018078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	97	368	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247373	153247373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	182	497	0	ENST00000281708.4:c.1429G>A	p.Gly477Ser	p.G477S	ENST00000281708	NM_033632.3	477	Ggt/Agt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266182	41266182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	102	452	0	ENST00000349496.5:c.179C>T	p.Ser60Phe	p.S60F	ENST00000349496	NM_001904.3	60	tCc/tTc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910798	114910798	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	217	652	0	ENST00000543371.1:c.917C>G	p.Thr306Arg	p.T306R	ENST00000543371	NM_001198531.1	306	aCg/aGg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94192630	94192630	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	282	854	0	ENST00000323929.3:c.1444C>T	p.Gln482Ter	p.Q482*	ENST00000323929	NM_005591.3	482	Cag/Tag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749329	43749329	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	266	801	0	ENST00000382044.4:c.1477G>T	p.Glu493Ter	p.E493*	ENST00000382044	NM_001141980.1	493	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579369	7579369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	81	565	0	ENST00000269305.4:c.318C>G	p.Ser106Arg	p.S106R	ENST00000269305	NM_001126112.2	106	agC/agG																																																																															
ATM	472	MSKCC	GRCh37	11	108160489	108160489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	56	389	0	ENST00000278616.4:c.4397G>A	p.Arg1466Gln	p.R1466Q	ENST00000278616	NM_000051.3	1466	cGa/cAa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	35	389	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214591	5214591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	54	532	1	ENST00000357368.4:c.4475G>A	p.Arg1492Gln	p.R1492Q	ENST00000357368	NM_002850.3	1492	cGg/cAg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198285221	198285221	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	40	503	0	ENST00000335508.6:c.346delG	p.Glu116LysfsTer11	p.E116Kfs*11	ENST00000335508	NM_012433.2	116	Gaa/aa																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149238642	149238642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	31	444	0	ENST00000360632.3:c.1153G>A	p.Asp385Asn	p.D385N	ENST00000360632	NM_015472.4	385	Gat/Aat																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129096	152129096	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	56	632	0	ENST00000206249.3:c.49C>T	p.Gln17Ter	p.Q17*	ENST00000206249	NM_000125.3	17	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	67	375	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	307	381	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ABL1	25	MSKCC	GRCh37	9	133750394	133750394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	231	517	1	ENST00000318560.5:c.1225G>A	p.Glu409Lys	p.E409K	ENST00000318560	NM_005157.4	409	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057947	27057947	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	216	524	0	ENST00000324856.7:c.1655C>G	p.Ser552Ter	p.S552*	ENST00000324856	NM_006015.4	552	tCa/tGa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476272	88476272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	488	600	3	ENST00000360948.2:c.1860G>A	p.Met620Ile	p.M620I	ENST00000360948	NM_001012338.2	620	atG/atA																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851710	63851710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	557	680	2	ENST00000279873.7:c.2488G>A	p.Asp830Asn	p.D830N	ENST00000279873	NM_032199.2	830	Gac/Aac																																																																															
MGA	23269	MSKCC	GRCh37	15	42046707	42046707	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	550	562	4	ENST00000219905.7:c.7081G>T	p.Glu2361Ter	p.E2361*	ENST00000219905	NM_001164273.1	2361	Gaa/Taa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3823848	3823854	+	frameshift_variant	Frame_Shift_Del	DEL	AGCGGGC	AGCGGGC	-			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	410	442	0	ENST00000262367.5:c.2361_2367delGCCCGCT	p.Pro788ArgfsTer17	p.P788Rfs*17	ENST00000262367	NM_004380.2	787	gcGCCCGCT/gc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828186	72828186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	221	544	0	ENST00000268489.5:c.8395C>T	p.Leu2799Phe	p.L2799F	ENST00000268489	NM_006885.3	2799	Ctt/Ttt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63526209	63526209	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	217	499	0	ENST00000307078.5:c.2417A>G	p.Lys806Arg	p.K806R	ENST00000307078	NM_004655.3	806	aAa/aGa																																																																															
INHA	3623	MSKCC	GRCh37	2	220439480	220439480	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	177	439	0	ENST00000243786.2:c.333C>A	p.Phe111Leu	p.F111L	ENST00000243786	NM_002191.3	111	ttC/ttA																																																																															
SRC	6714	MSKCC	GRCh37	20	36024667	36024667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	504	592	0	ENST00000358208.4:c.656C>T	p.Ser219Phe	p.S219F	ENST00000358208		219	tCc/tTc																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99808261	99808261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	393	383	0	ENST00000280892.6:c.428G>A	p.Arg143Gln	p.R143Q	ENST00000280892	NM_001130678.1	143	cGa/cAa																																																																															
TET2	54790	MSKCC	GRCh37	4	106180915	106180915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	117	310	2	ENST00000380013.4:c.3943G>A	p.Asp1315Asn	p.D1315N	ENST00000380013	NM_001127208.2	1315	Gac/Aac																																																																															
EZH2	2146	MSKCC	GRCh37	7	148525910	148525910	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	242	608	0	ENST00000320356.2:c.547G>C	p.Asp183His	p.D183H	ENST00000320356	NM_004456.4	183	Gat/Cat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828176	72828176	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	197	433	0	ENST00000268489.5:c.8405delC	p.Pro2802LeufsTer22	p.P2802Lfs*22	ENST00000268489	NM_006885.3	2802	cCt/ct																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	609	499	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7579408	7579460	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTG	CAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTG	-			P-0018092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	1012	475	0	ENST00000269305.4:c.227_279delCACCAGCAGCTCCTACACCGGCGGCCCCTGCACCAGCCCCCTCCTGGCCCCTG	p.Ala76ValfsTer55	p.A76Vfs*55	ENST00000269305	NM_001126112.2	76	gCACCAGCAGCTCCTACACCGGCGGCCCCTGCACCAGCCCCCTCCTGGCCCCTG/g																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509084	66509085	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	99	381	0	ENST00000273854.3:c.242dupA	p.Asn81LysfsTer8	p.N81Kfs*8	ENST00000273854	NM_004439.5	81	aat/aaAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023381	27023381	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	291	247	2	ENST00000324856.7:c.487delG	p.Ala163ProfsTer69	p.A163Pfs*69	ENST00000324856	NM_006015.4	163	Gcc/cc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861825	57861825	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	549	483	1	ENST00000228682.2:c.1126C>A	p.Pro376Thr	p.P376T	ENST00000228682	NM_005269.2	376	Cct/Act																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158476	26158476	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	63	471	1	ENST00000289316.2:c.79G>T	p.Gly27Trp	p.G27W	ENST00000289316	NM_138720.2	27	Ggg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	33	358	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0018095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	2215	475	2	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0018095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	193	646	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101909953	101909953	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	63	202	0	ENST00000374994.4:c.1273C>T	p.Gln425Ter	p.Q425*	ENST00000374994	NM_004612.2	425	Caa/Taa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971053	21971053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	108	343	0	ENST00000304494.5:c.305C>T	p.Ala102Val	p.A102V	ENST00000304494	NM_000077.4	102	gCg/gTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7117173	7117173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	41	466	0	ENST00000302850.5:c.4043C>T	p.Ser1348Leu	p.S1348L	ENST00000302850	NM_000208.2	1348	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0018096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	501	598	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0018096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	109	361	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	200	310	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																															
TSC2	7249	MSKCC	GRCh37	16	2135247	2135247	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769834772		P-0018096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	172	564	1	ENST00000219476.3:c.4586G>A	p.Arg1529Gln	p.R1529Q	ENST00000219476	NM_000548.3	1529	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175687	112175687	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	236	426	2	ENST00000257430.4:c.4396G>T	p.Gly1466Ter	p.G1466*	ENST00000257430	NM_000038.5	1466	Gga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1220476	1220476	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	582	719	0	ENST00000326873.7:c.569T>C	p.Leu190Pro	p.L190P	ENST00000326873	NM_000455.4	190	cTc/cCc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118361952	118361952	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	163	253	0	ENST00000534358.1:c.4738G>C	p.Asp1580His	p.D1580H	ENST00000534358	NM_005933.3	1580	Gac/Cac																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686994	37686994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	443	483	0	ENST00000447079.4:c.3898G>A	p.Ala1300Thr	p.A1300T	ENST00000447079	NM_015083.1	1300	Gcc/Acc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211104	2211104	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	193	772	1	ENST00000398665.3:c.1358A>T	p.Tyr453Phe	p.Y453F	ENST00000398665	NM_032482.2	453	tAc/tTc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46587815	46587815	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	262	481	0	ENST00000263734.3:c.493G>C	p.Glu165Gln	p.E165Q	ENST00000263734	NM_001430.4	165	Gag/Cag																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520112	9520112	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	79	254	0	ENST00000353224.5:c.2157C>G	p.His719Gln	p.H719Q	ENST00000353224	NM_177990.2	719	caC/caG																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866314	42866328	+	inframe_deletion	In_Frame_Del	DEL	GGGCTGCGTGCAGAC	GGGCTGCGTGCAGAC	-			P-0018099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	114	510	0	ENST00000398585.3:c.304_318delGTCTGCACGCAGCCC	p.Val102_Pro106del	p.V102_P106del	ENST00000398585	NM_001135099.1	102	GTCTGCACGCAGCCC/-																																																																															
APC	324	MSKCC	GRCh37	5	112175139	112175139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	137	232	0	ENST00000257430.4:c.3848C>T	p.Ala1283Val	p.A1283V	ENST00000257430	NM_000038.5	1283	gCt/gTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012257	152012257	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	119	412	0	ENST00000262189.6:c.556A>C	p.Asn186His	p.N186H	ENST00000262189	NM_170606.2	186	Aac/Cac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932240	39932240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	192	885	1	ENST00000378444.4:c.2359C>T	p.Pro787Ser	p.P787S	ENST00000378444	NM_001123385.1	787	Ccg/Tcg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	57	450	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0018104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	58	447	2	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0018104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	87	618	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925334	114925334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	96	623	0	ENST00000543371.1:c.1412G>A	p.Arg471His	p.R471H	ENST00000543371	NM_001198531.1	471	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112174751	112174753	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0018104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	28	371	0	ENST00000257430.4:c.3468_3470delAGA	p.Glu1157del	p.E1157del	ENST00000257430	NM_000038.5	1154	GAA/-																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903750	114903750	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	103	620	0	ENST00000543371.1:c.754C>T	p.Gln252Ter	p.Q252*	ENST00000543371	NM_001198531.1	252	Caa/Taa																																																																															
WT1	7490	MSKCC	GRCh37	11	32417953	32417953	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0018104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	67	419	0	ENST00000332351.3:c.1099G>T	p.Asp367Tyr	p.D367Y	ENST00000332351	NM_024426.4	367	Gat/Tat																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123832	46123832	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	60	309	0	ENST00000334344.6:c.98C>G	p.Pro33Arg	p.P33R	ENST00000334344	NM_152641.2	33	cCt/cGt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212625	36212625	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1117	122	804	0	ENST00000222270.7:c.2376G>T	p.Met792Ile	p.M792I	ENST00000222270	NM_014727.1	792	atG/atT																																																																															
APC	324	MSKCC	GRCh37	5	112173563	112173563	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	43	357	0	ENST00000257430.4:c.2272A>T	p.Lys758Ter	p.K758*	ENST00000257430	NM_000038.5	758	Aaa/Taa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38272308	38272308	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	88	671	0	ENST00000425967.3:c.2059A>G	p.Lys687Glu	p.K687E	ENST00000425967	NM_001174067.1	687	Aag/Gag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1421	218	1046	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574000	7574000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	173	1303	1	ENST00000269305.4:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000269305	NM_001126112.2	343	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600446	10600446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	105	1265	3	ENST00000171111.5:c.1409G>A	p.Arg470His	p.R470H	ENST00000171111	NM_203500.1	470	cGt/cAt																																																																															
KIT	3815	MSKCC	GRCh37	4	55573290	55573290	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs143388949		P-0018108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	98	787	0	ENST00000288135.5:c.952A>G	p.Met318Val	p.M318V	ENST00000288135	NM_000222.2	318	Atg/Gtg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111855750	111856076	+	splice_acceptor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	GCCCCTTACAGAATGCCACTTGGTAGGGGAGTGCATGTTTCCCTGCATCTTCACCAGCACTGGGTGTTATGGTCGCGTTGGATTTCTGCTGTGGTGCCCGGTGTGTAATGGGGCCTACACCTGCTTGCCCACCTGCTTACTCCTTGTCGCCCCCCCACCCACGTGTCTTTCAGCCCGGCCGCACCACCTGGGTCTCCGCCATGAACGGGCCTGCCCTGCAGCCCTCCTCGCCCTCTTCCGCGCCCTCAGCCTCCCCGGCGGCGGCCCCGCGGGGCTGGAGCGAGTTCTGTGAGTTGCACGCCGTAGCGGCGGCCCGGGAGCTGGCCC	GCCCCTTACAGAATGCCACTTGGTAGGGGAGTGCATGTTTCCCTGCATCTTCACCAGCACTGGGTGTTATGGTCGCGTTGGATTTCTGCTGTGGTGCCCGGTGTGTAATGGGGCCTACACCTGCTTGCCCACCTGCTTACTCCTTGTCGCCCCCCCACCCACGTGTCTTTCAGCCCGGCCGCACCACCTGGGTCTCCGCCATGAACGGGCCTGCCCTGCAGCCCTCCTCGCCCTCTTCCGCGCCCTCAGCCTCCCCGGCGGCGGCCCCGCGGGGCTGGAGCGAGTTCTGTGAGTTGCACGCCGTAGCGGCGGCCCGGGAGCTGGCCC	-			P-0018108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			14	83	35	2	ENST00000341259.2:c.-27-170_130delCCTTACAGAATGCCACTTGGTAGGGGAGTGCATGTTTCCCTGCATCTTCACCAGCACTGGGTGTTATGGTCGCGTTGGATTTCTGCTGTGGTGCCCGGTGTGTAATGGGGCCTACACCTGCTTGCCCACCTGCTTACTCCTTGTCGCCCCCCCACCCACGTGTCTTTCAGCCCGGCCGCACCACCTGGGTCTCCGCCATGAACGGGCCTGCCCTGCAGCCCTCCTCGCCCTCTTCCGCGCCCTCAGCCTCCCCGGCGGCGGCCCCGCGGGGCTGGAGCGAGTTCTGTGAGTTGCACGCCGTAGCGGCGGCCCGGGAGCTGGCCCGCC		p.X9_splice	ENST00000341259	NM_005475.2	9																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72830244	72830244	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	31	320	0	ENST00000268489.5:c.6337C>T	p.Gln2113Ter	p.Q2113*	ENST00000268489	NM_006885.3	2113	Cag/Tag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231417	5231417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	139	1075	1	ENST00000357368.4:c.2059G>A	p.Glu687Lys	p.E687K	ENST00000357368	NM_002850.3	687	Gag/Aag																																																																															
CALR	811	MSKCC	GRCh37	19	13050882	13050882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	105	867	0	ENST00000316448.5:c.413G>A	p.Gly138Asp	p.G138D	ENST00000316448	NM_004343.3	138	gGc/gAc																																																																															
ALK	238	MSKCC	GRCh37	2	29754796	29754796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	44	554	0	ENST00000389048.3:c.1139C>T	p.Thr380Ile	p.T380I	ENST00000389048	NM_004304.4	380	aCt/aTt																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169988339	169988339	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1184	66	526	0	ENST00000295797.4:c.581C>G	p.Ser194Cys	p.S194C	ENST00000295797	NM_002740.5	194	tCt/tGt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139862	55139862	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	81	586	0	ENST00000257290.5:c.1523G>C	p.Gly508Ala	p.G508A	ENST00000257290	NM_006206.4	508	gGa/gCa																																																																															
TERT	7015	MSKCC	GRCh37	5	1294993	1294993	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	20	91	0	ENST00000310581.5:c.112C>A	p.Leu38Met	p.L38M	ENST00000310581	NM_198253.2	38	Ctg/Atg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729697	41729697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	119	900	0	ENST00000242208.4:c.832G>T	p.Gly278Trp	p.G278W	ENST00000242208	NM_002192.2	278	Ggg/Tgg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739894	41739894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	117	705	0	ENST00000242208.4:c.79G>A	p.Glu27Lys	p.E27K	ENST00000242208	NM_002192.2	27	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0018109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	119	894	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0018109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	69	553	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0018109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	216	916	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28636100	28636100	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	145	874	0	ENST00000241453.7:c.272T>A	p.Leu91Gln	p.L91Q	ENST00000241453	NM_004119.2	91	cTg/cAg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641487	23641487	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	174	956	28	ENST00000261584.4:c.1988G>C	p.Arg663Pro	p.R663P	ENST00000261584	NM_024675.3	663	cGc/cCc																																																																															
CALR	811	MSKCC	GRCh37	19	13050343	13050343	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	172	751	0	ENST00000316448.5:c.295C>G	p.His99Asp	p.H99D	ENST00000316448	NM_004343.3	99	Cat/Gat																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200121	128200121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	201	929	1	ENST00000341105.2:c.1184C>T	p.Thr395Ile	p.T395I	ENST00000341105	NM_032638.4	395	aCt/aTt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38274908	38274954	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGACAAGTCTTTCTCTGTTGCGTCCGCTTTAAAGAACACGTTGAGA	CTGACAAGTCTTTCTCTGTTGCGTCCGCTTTAAAGAACACGTTGAGA	-			P-0018109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	58	1081	0	ENST00000425967.3:c.1646-20_1672delTCTCAACGTGTTCTTTAAAGCGGACGCAACAGAGAAAGACTTGTCAG		p.X549_splice	ENST00000425967	NM_001174067.1	549																																																																																
RECQL4	9401	MSKCC	GRCh37	8	145737698	145737698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	155	842	0	ENST00000428558.2:c.3065G>A	p.Arg1022His	p.R1022H	ENST00000428558	NM_004260.3	1022	cGt/cAt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135777017	135777017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	175	769	0	ENST00000298552.3:c.2461G>T	p.Val821Leu	p.V821L	ENST00000298552	NM_001162426.1	821	Gtg/Ttg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0018112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	202	1001	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0018112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	167	925	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200305	67200305	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	83	738	1	ENST00000312629.5:c.613C>A	p.Gln205Lys	p.Q205K	ENST00000312629	NM_003952.2	205	Cag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108236109	108236109	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	66	855	0	ENST00000278616.4:c.9045G>C	p.Glu3015Asp	p.E3015D	ENST00000278616	NM_000051.3	3015	gaG/gaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380320	25380320	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	127	734	0	ENST00000256078.4:c.138T>G	p.Ile46Met	p.I46M	ENST00000256078	NM_033360.2	46	atT/atG																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0018117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	66	210	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	229	882	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																															
AR	367	MSKCC	GRCh37	X	66765159	66765188	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	-			P-0018117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	82	184	0	ENST00000374690.3:c.210_239delGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	p.Gln71_Gln80del	p.Q71_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg																																																																															
TET2	54790	MSKCC	GRCh37	4	106197413	106197413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	196	531	0	ENST00000380013.4:c.5746C>T	p.Leu1916Phe	p.L1916F	ENST00000380013	NM_001127208.2	1916	Ctt/Ttt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467747	50467747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	250	762	0	ENST00000331340.3:c.982C>T	p.Arg328Cys	p.R328C	ENST00000331340	NM_006060.4	328	Cgc/Tgc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251725	212251725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144311212		P-0018117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	159	419	0	ENST00000342788.4:c.3334C>T	p.Arg1112Cys	p.R1112C	ENST00000342788	NM_005235.2	1112	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441780	49441781	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0018117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	360	695	0	ENST00000301067.7:c.4203_4204delTC	p.Gln1402ValfsTer29	p.Q1402Vfs*29	ENST00000301067	NM_003482.3	1401	tcTCag/tcag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061142	38061161	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTTCCGCTCCCGCCCCCG	CGCTTCCGCTCCCGCCCCCG	-			P-0018117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	95	169	0	ENST00000250448.2:c.828_847delCGGGGGCGGGAGCGGAAGCG	p.Gly278GlnfsTer8	p.G278Qfs*8	ENST00000250448	NM_004496.3	276	ggCGGGGGCGGGAGCGGAAGCGgg/gggg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576838	7576866	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCAAGACTTAGTACCTGAAGGGTGAAAT	CCCAAGACTTAGTACCTGAAGGGTGAAAT	GATAAGATGG			P-0018117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	176	812	2	ENST00000269305.4:c.980_993+15delATTTCACCCTTCAGGTACTAAGTCTTGGGinsCCATCTTATC		p.X327_splice	ENST00000269305	NM_001126112.2	327																																																																																
SOS1	6654	MSKCC	GRCh37	2	39281838	39281838	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	374	965	0	ENST00000402219.2:c.637delC	p.Arg213AspfsTer4	p.R213Dfs*4	ENST00000402219	NM_005633.3	213	Cga/ga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52598148	52598148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	327	881	2	ENST00000394830.3:c.3718G>A	p.Asp1240Asn	p.D1240N	ENST00000394830	NM_018313.4	1240	Gac/Aac																																																																															
AR	367	MSKCC	GRCh37	X	66765188	66765188	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	10	137	0	ENST00000374690.3:c.200A>T	p.Gln67Leu	p.Q67L	ENST00000374690	NM_000044.3	67	cAg/cTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	34	549	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111517	8111518	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	43	811	0	ENST00000346208.3:c.1004dupA	p.Asp335GlufsTer17	p.D335Efs*17	ENST00000346208		335	gac/gAac																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023123	31023123	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	115	655	0	ENST00000375687.4:c.2609delG	p.Gly870AlafsTer6	p.G870Afs*6	ENST00000375687	NM_015338.5	870	Ggc/gc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0018120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	12	447	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
STK11	6794	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs137853076		P-0018120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	62	1039	0	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221977	1221977	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	45	809	0	ENST00000326873.7:c.893delT	p.Phe298SerfsTer38	p.F298Sfs*38	ENST00000326873	NM_000455.4	298	Ttc/tc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	219	876	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	367	1081	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	27	345	0	ENST00000244661.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000244661	NM_003537.3	106	Gag/Cag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99459972	99459972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	236	698	3	ENST00000268035.6:c.2068G>A	p.Glu690Lys	p.E690K	ENST00000268035	NM_000875.3	690	Gag/Aag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532552	187532552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	169	438	0	ENST00000441802.2:c.9841G>T	p.Asp3281Tyr	p.D3281Y	ENST00000441802	NM_005245.3	3281	Gat/Tat																																																																															
MGA	23269	MSKCC	GRCh37	15	42040955	42040955	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	307	825	0	ENST00000219905.7:c.5333C>G	p.Ser1778Ter	p.S1778*	ENST00000219905	NM_001164273.1	1778	tCa/tGa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302673	15302673	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	351	1148	0	ENST00000263388.2:c.685G>C	p.Glu229Gln	p.E229Q	ENST00000263388	NM_000435.2	229	Gag/Cag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120460379	120460379	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	111	626	0	ENST00000256646.2:c.5936C>G	p.Ser1979Cys	p.S1979C	ENST00000256646	NM_024408.3	1979	tCt/tGt																																																																															
BLM	641	MSKCC	GRCh37	15	91298159	91298159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	172	569	1	ENST00000355112.3:c.1078G>A	p.Asp360Asn	p.D360N	ENST00000355112	NM_000057.2	360	Gac/Aac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274223	10274223	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	90	449	0	ENST00000330684.3:c.46C>G	p.Leu16Val	p.L16V	ENST00000330684	NM_001134407.1	16	Ctg/Gtg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969908	81969908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	315	896	1	ENST00000359376.3:c.2977G>A	p.Asp993Asn	p.D993N	ENST00000359376	NM_002661.3	993	Gac/Aac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16068409	16068409	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	30	83	0	ENST00000268712.3:c.502G>C	p.Asp168His	p.D168H	ENST00000268712	NM_006311.3	168	Gat/Cat																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650804	37650804	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	317	960	0	ENST00000447079.4:c.2276G>C	p.Arg759Thr	p.R759T	ENST00000447079	NM_015083.1	759	aGa/aCa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395716	45395716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	233	601	0	ENST00000262160.6:c.418C>T	p.His140Tyr	p.H140Y	ENST00000262160	NM_005901.5	140	Cat/Tat																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302865	15302865	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	340	976	0	ENST00000263388.2:c.585G>C	p.Glu195Asp	p.E195D	ENST00000263388	NM_000435.2	195	gaG/gaC																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182606	99182606	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	157	389	0	ENST00000074304.5:c.2409C>G	p.Ile803Met	p.I803M	ENST00000074304	NM_001134224.1	803	atC/atG																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884831	134884831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	155	456	2	ENST00000398015.3:c.1607G>A	p.Arg536Lys	p.R536K	ENST00000398015	NM_004441.4	536	aGg/aAg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665360	138665360	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	74	1066	1	ENST00000330315.3:c.205G>C	p.Glu69Gln	p.E69Q	ENST00000330315	NM_023067.3	69	Gag/Cag																																																																															
APC	324	MSKCC	GRCh37	5	112116502	112116502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	150	471	0	ENST00000257430.4:c.547G>A	p.Asp183Asn	p.D183N	ENST00000257430	NM_000038.5	183	Gat/Aat																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555344	106555344	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	31	686	0	ENST00000369096.4:c.2461G>C	p.Glu821Gln	p.E821Q	ENST00000369096	NM_001198.3	821	Gaa/Caa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157470056	157470081	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGGCTGCTGCGAACTCAGCACAAA	GCAGGCTGCTGCGAACTCAGCACAAA	-			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	70	369	0	ENST00000346085.5:c.2855_2879+1delCTGCTGCGAACTCAGCACAAAGCAGG		p.MQAAANSAQS950fs	ENST00000346085	NM_020732.3	950	atGCAGGCTGCTGCGAACTCAGCACAAAgc/atgc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69058452	69058452	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	88	644	0	ENST00000288368.4:c.4096C>G	p.Leu1366Val	p.L1366V	ENST00000288368	NM_024870.2	1366	Ctt/Gtt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054737	5054999	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCCTTCTACACAGAGAAATTTGAAGTAAAAGAACCTGGAAGTGGTCCTTCAGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAAGAAAGTGAGACACTGACAGAACAGGTAATCCTTAATGATATGTTCTTGTTCTTTGTTATTTTAAGTACAATGGAAATAAAAACAAAGTAATTTTAATCATTTGCAACATGGTATTGCACTTCTCCCATTTGATAGAAGT	TGCCTTCTACACAGAGAAATTTGAAGTAAAAGAACCTGGAAGTGGTCCTTCAGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAAGAAAGTGAGACACTGACAGAACAGGTAATCCTTAATGATATGTTCTTGTTCTTTGTTATTTTAAGTACAATGGAAATAAAAACAAAGTAATTTTAATCATTTGCAACATGGTATTGCACTTCTCCCATTTGATAGAAGT	-			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	46	637	0	ENST00000381652.3:c.789_936+115delTGCCTTCTACACAGAGAAATTTGAAGTAAAAGAACCTGGAAGTGGTCCTTCAGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAAGAAAGTGAGACACTGACAGAACAGGTAATCCTTAATGATATGTTCTTGTTCTTTGTTATTTTAAGTACAATGGAAATAAAAACAAAGTAATTTTAATCATTTGCAACATGGTATTGCACTTCTCCCATTTGATAGAAGT		p.X263_splice	ENST00000381652	NM_004972.3	263																																																																																
TSC1	7248	MSKCC	GRCh37	9	135771774	135771774	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	360	1155	0	ENST00000298552.3:c.3343G>C	p.Glu1115Gln	p.E1115Q	ENST00000298552	NM_001162426.1	1115	Gag/Cag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	208	573	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	519	637	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983806	15983810	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	TGATG	TGATG	-			P-0018122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	391	626	1	ENST00000268712.3:c.3312_3316delCATCA	p.Tyr1104Ter	p.Y1104*	ENST00000268712	NM_006311.3	1104	taCATCAag/taag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177011	56177015	+	frameshift_variant	Frame_Shift_Del	DEL	ATAGA	ATAGA	TATC			P-0018122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	172	444	1	ENST00000399503.3:c.2281_2285delATAGAinsTATC	p.Ile761TyrfsTer38	p.I761Yfs*38	ENST00000399503	NM_005921.1	761	ATAGAt/TATCt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180541	56180558	+	inframe_deletion	In_Frame_Del	DEL	ACTAAGAGAAGAGATAAG	ACTAAGAGAAGAGATAAG	-			P-0018122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	146	503	0	ENST00000399503.3:c.3871_3888delCTAAGAGAAGAGATAAGA	p.Leu1291_Arg1296del	p.L1291_R1296del	ENST00000399503	NM_005921.1	1290	gcACTAAGAGAAGAGATAAGa/gca																																																																															
CARD11	84433	MSKCC	GRCh37	7	2963948	2963948	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	275	653	0	ENST00000396946.4:c.1859C>A	p.Ser620Tyr	p.S620Y	ENST00000396946	NM_032415.4	620	tCc/tAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	16	687	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	61	996	2	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0018125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	80	461	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
CDH1	999	MSKCC	GRCh37	16	68856020	68856020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	124	811	0	ENST00000261769.5:c.1828C>T	p.Gln610Ter	p.Q610*	ENST00000261769	NM_004360.3	610	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0018129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	123	1001	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0018129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	50	613	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0018129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	93	805	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793340	242793340	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201540918		P-0018129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	62	1070	1	ENST00000334409.5:c.737C>T	p.Thr246Met	p.T246M	ENST00000334409	NM_005018.2	246	aCg/aTg																																																																															
ATM	472	MSKCC	GRCh37	11	108199948	108199948	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	55	466	0	ENST00000278616.4:c.7290T>G	p.His2430Gln	p.H2430Q	ENST00000278616	NM_000051.3	2430	caT/caG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435279	49435279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181521514		P-0018129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	49	787	1	ENST00000301067.7:c.6274G>A	p.Asp2092Asn	p.D2092N	ENST00000301067	NM_003482.3	2092	Gac/Aac																																																																															
APC	324	MSKCC	GRCh37	5	112173473	112173473	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	35	476	1	ENST00000257430.4:c.2182A>G	p.Asn728Asp	p.N728D	ENST00000257430	NM_000038.5	728	Aat/Gat																																																																															
POLD1	5424	MSKCC	GRCh37	19	50920463	50920463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	134	610	2	ENST00000440232.2:c.3155C>T	p.Ser1052Leu	p.S1052L	ENST00000440232	NM_002691.3	1052	tCg/tTg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482607	56482607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	257	932	0	ENST00000267101.3:c.1064C>T	p.Thr355Ile	p.T355I	ENST00000267101	NM_001982.3	355	aCc/aTc																																																																															
RARA	5914	MSKCC	GRCh37	17	38510644	38510644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	249	894	3	ENST00000254066.5:c.898G>A	p.Ala300Thr	p.A300T	ENST00000254066	NM_000964.3	300	Gct/Act																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851402	63851402	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	206	716	0	ENST00000279873.7:c.2180A>G	p.Asp727Gly	p.D727G	ENST00000279873	NM_032199.2	727	gAc/gGc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114118	115114119	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0018133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	163	477	0	ENST00000257566.3:c.1098dupA	p.Asp367ArgfsTer8	p.D367Rfs*8	ENST00000257566	NM_016569.3	366	-/A																																																																															
CDH1	999	MSKCC	GRCh37	16	68862094	68862094	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	177	528	0	ENST00000261769.5:c.2183delT	p.Leu728CysfsTer42	p.L728Cfs*42	ENST00000261769	NM_004360.3	728	Ttg/tg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581281	48581281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0018133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	225	894	0	ENST00000342988.3:c.585C>G	p.Tyr195Ter	p.Y195*	ENST00000342988	NM_005359.5	195	taC/taG																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165234	32165234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	251	774	1	ENST00000375023.3:c.4894G>T	p.Gly1632Cys	p.G1632C	ENST00000375023	NM_004557.3	1632	Ggc/Tgc																																																																															
ATRX	546	MSKCC	GRCh37	X	76907824	76907824	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	59	192	0	ENST00000373344.5:c.4337A>T	p.Glu1446Val	p.E1446V	ENST00000373344	NM_000489.3	1446	gAg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0018134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	143	683	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73336073	73336073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	46	313	0	ENST00000377767.4:c.2330C>T	p.Ser777Leu	p.S777L	ENST00000377767	NM_014953.3	777	tCa/tTa																																																																															
RB1	5925	MSKCC	GRCh37	13	49033833	49033833	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	91	502	0	ENST00000267163.4:c.1970T>C	p.Leu657Pro	p.L657P	ENST00000267163	NM_000321.2	657	cTa/cCa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061024	38061024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	44	181	0	ENST00000250448.2:c.965G>T	p.Gly322Val	p.G322V	ENST00000250448	NM_004496.3	322	gGc/gTc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217677	7217700	+	inframe_deletion	In_Frame_Del	DEL	GCTTCTCTTCCTGTAGAGCCAAAA	GCTTCTCTTCCTGTAGAGCCAAAA	-			P-0018134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	88	473	0	ENST00000380728.2:c.227_250delTTTTGGCTCTACAGGAAGAGAAGC	p.Leu76_Lys83del	p.L76_K83del	ENST00000380728		76	cTTTTGGCTCTACAGGAAGAGAAGCac/cac																																																																															
STK19	8859	MSKCC	GRCh37	6	31939981	31939981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	92	337	0	ENST00000375331.2:c.208G>A	p.Gly70Arg	p.G70R	ENST00000375331	NM_004197.1	70	Gga/Aga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819187	3819188	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	G			P-0018134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	82	448	0	ENST00000262367.5:c.3047_3048delAGinsC	p.Glu1016AlafsTer6	p.E1016Afs*6	ENST00000262367	NM_004380.2	1016	gAG/gC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	71	913	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	134	1200	6	ENST00000269305.4:c.405C>A	p.Cys135Ter	p.C135*	ENST00000269305	NM_001126112.2	135	tgC/tgA																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971069	21971069	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	46	336	0	ENST00000304494.5:c.289C>G	p.Leu97Val	p.L97V	ENST00000304494	NM_000077.4	97	Ctg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	258	963	1	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591931	48591931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	31	426	0	ENST00000342988.3:c.1094G>A	p.Gly365Asp	p.G365D	ENST00000342988	NM_005359.5	365	gGt/gAt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209465	98209465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	85	453	0	ENST00000331920.6:c.4073G>T	p.Gly1358Val	p.G1358V	ENST00000331920	NM_000264.3	1358	gGc/gTc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11184601	11184601	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	140	714	0	ENST00000361445.4:c.6616A>G	p.Asn2206Asp	p.N2206D	ENST00000361445	NM_004958.3	2206	Aac/Gac																																																																															
RB1	5925	MSKCC	GRCh37	13	49027156	49027159	+	frameshift_variant	Frame_Shift_Del	DEL	CAAT	CAAT	-			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	11	581	0	ENST00000267163.4:c.1726_1729del	p.Ser576ArgfsTer34	p.S576Rfs*34	ENST00000267163	NM_000321.2	575	CAATca/ca																																																																															
NF1	4763	MSKCC	GRCh37	17	29533290	29533291	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	66	354	0	ENST00000358273.4:c.1296_1297delGT	p.Tyr433LeufsTer5	p.Y433Lfs*5	ENST00000358273	NM_001042492.2	431	gcTGtg/gctg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231530	5231530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	103	698	1	ENST00000357368.4:c.1946G>T	p.Gly649Val	p.G649V	ENST00000357368	NM_002850.3	649	gGg/gTg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198281592	198281592	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	80	543	1	ENST00000335508.6:c.539A>T	p.Glu180Val	p.E180V	ENST00000335508	NM_012433.2	180	gAa/gTa																																																																															
EP300	2033	MSKCC	GRCh37	22	41546039	41546039	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	66	1024	0	ENST00000263253.7:c.2654C>G	p.Thr885Arg	p.T885R	ENST00000263253	NM_001429.3	885	aCa/aGa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391034	89391034	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	78	737	2	ENST00000336596.2:c.1100G>T	p.Gly367Val	p.G367V	ENST00000336596	NM_005233.5	367	gGg/gTg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1920240	1920240	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	149	766	0	ENST00000382891.5:c.1300G>C	p.Gly434Arg	p.G434R	ENST00000382891	NM_133335.3	434	Gga/Cga																																																																															
KDR	3791	MSKCC	GRCh37	4	55980328	55980328	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	81	725	0	ENST00000263923.4:c.763G>C	p.Gly255Arg	p.G255R	ENST00000263923	NM_002253.2	255	Ggg/Cgg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081638	143081638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	79	427	0	ENST00000262992.4:c.1436G>A	p.Gly479Glu	p.G479E	ENST00000262992	NM_001101669.1	479	gGa/gAa																																																																															
MED12	9968	MSKCC	GRCh37	X	70345232	70345232	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	106	329	2	ENST00000374080.3:c.2258G>T	p.Arg753Leu	p.R753L	ENST00000374080		753	cGg/cTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0018140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	211	594	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0018140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	303	722	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591901	48591901	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	82	436	0	ENST00000342988.3:c.1064A>T	p.Asp355Val	p.D355V	ENST00000342988	NM_005359.5	355	gAc/gTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16264400	16264400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	43	812	0	ENST00000375759.3:c.10603C>T	p.His3535Tyr	p.H3535Y	ENST00000375759	NM_015001.2	3535	Cat/Tat																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998124	169998124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	65	718	1	ENST00000295797.4:c.815G>A	p.Arg272Gln	p.R272Q	ENST00000295797	NM_002740.5	272	cGa/cAa																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0018146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	51	357	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25457242	25457242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147001633		P-0018146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	11	518	2	ENST00000264709.3:c.2645G>A	p.Arg882His	p.R882H	ENST00000264709	NM_175629.2	882	cGc/cAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115729	8115730	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	34	567	0	ENST00000346208.3:c.1077dupA	p.Gly360ArgfsTer11	p.G360Rfs*11	ENST00000346208		359	gaa/gAaa																																																																															
TET1	80312	MSKCC	GRCh37	10	70332103	70332103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763123299		P-0018146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	29	152	0	ENST00000373644.4:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000373644	NM_030625.2	3	cGa/cAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29665721	29665721	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0018146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	27	415	0	ENST00000358273.4:c.6820-1G>C		p.X2274_splice	ENST00000358273	NM_001042492.2	2274																																																																																
PIK3CB	5291	MSKCC	GRCh37	3	138461452	138461452	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	88	505	1	ENST00000289153.2:c.569A>T	p.Asp190Val	p.D190V	ENST00000289153	NM_006219.2	190	gAt/gTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	131	529	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																															
ATM	472	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	93	353	0	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168695	32168695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143103753		P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	105	617	0	ENST00000375023.3:c.4228C>T	p.Arg1410Cys	p.R1410C	ENST00000375023	NM_004557.3	1410	Cgc/Tgc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913396		P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	54	307	0	ENST00000349496.5:c.95A>G	p.Asp32Gly	p.D32G	ENST00000349496	NM_001904.3	32	gAc/gGc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	155	765	7	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39647380	39647380	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1306170227		P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	108	333	1	ENST00000262039.4:c.2552C>T	p.Ser851Leu	p.S851L	ENST00000262039	NM_002647.2	851	tCg/tTg																																																																															
SUFU	51684	MSKCC	GRCh37	10	104375092	104375092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	125	523	0	ENST00000369902.3:c.1090C>T	p.Arg364Trp	p.R364W	ENST00000369902	NM_016169.3	364	Cgg/Tgg																																																																															
REL	5966	MSKCC	GRCh37	2	61118821	61118821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146326268		P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	45	164	0	ENST00000295025.8:c.14C>T	p.Ala5Val	p.A5V	ENST00000295025	NM_002908.2	5	gCg/gTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399976	139399976	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200495793		P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	87	648	1	ENST00000277541.6:c.4372G>A	p.Ala1458Thr	p.A1458T	ENST00000277541	NM_017617.3	1458	Gcg/Acg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401080	139401080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	48	528	0	ENST00000277541.6:c.3913G>A	p.Glu1305Lys	p.E1305K	ENST00000277541	NM_017617.3	1305	Gag/Aag																																																																															
TET2	54790	MSKCC	GRCh37	4	106197518	106197518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	63	351	1	ENST00000380013.4:c.5851C>T	p.Arg1951Trp	p.R1951W	ENST00000380013	NM_001127208.2	1951	Cgg/Tgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087408	27087408	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	60	630	0	ENST00000324856.7:c.1982T>C	p.Val661Ala	p.V661A	ENST00000324856	NM_006015.4	661	gTg/gCg																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439772	51439772	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	74	210	0	ENST00000262662.1:c.337G>C	p.Glu113Gln	p.E113Q	ENST00000262662		113	Gaa/Caa																																																																															
RET	5979	MSKCC	GRCh37	10	43615108	43615108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149891333		P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	58	627	1	ENST00000355710.3:c.2522C>T	p.Pro841Leu	p.P841L	ENST00000355710	NM_020975.4	841	cCg/cTg																																																																															
TET1	80312	MSKCC	GRCh37	10	70451416	70451439	+	inframe_deletion	In_Frame_Del	DEL	CAGGCAGCTAATGAAGGTCCAGAA	CAGGCAGCTAATGAAGGTCCAGAA	-			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	102	600	0	ENST00000373644.4:c.6259_6282del	p.Ala2087_Gln2094del	p.A2087_Q2094del	ENST00000373644	NM_030625.2	2086	CAGGCAGCTAATGAAGGTCCAGAA/-																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373313	118373313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	144	487	0	ENST00000534358.1:c.6706G>A	p.Ala2236Thr	p.A2236T	ENST00000534358	NM_005933.3	2236	Gct/Act																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245709	46245709	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	84	472	0	ENST00000334344.6:c.3803A>G	p.Asn1268Ser	p.N1268S	ENST00000334344	NM_152641.2	1268	aAc/aGc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557762	21557762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	95	580	3	ENST00000382592.4:c.2083G>A	p.Ala695Thr	p.A695T	ENST00000382592	NM_014572.2	695	Gcc/Acc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28896484	28896484	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	66	556	0	ENST00000282397.4:c.2966del	p.Phe989SerfsTer11	p.F989Sfs*11	ENST00000282397	NM_002019.4	989	tTc/tc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643524	38643524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	42	588	2	ENST00000299084.4:c.994C>T	p.Arg332Cys	p.R332C	ENST00000299084	NM_152594.2	332	Cgt/Tgt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67650720	67650720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	116	563	2	ENST00000264010.4:c.1025G>A	p.Arg342His	p.R342H	ENST00000264010	NM_006565.3	342	cGt/cAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866342	37866342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	76	303	0	ENST00000269571.5:c.647C>T	p.Thr216Met	p.T216M	ENST00000269571		216	aCg/aTg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534428	63534428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	114	638	0	ENST00000307078.5:c.1093G>A	p.Val365Met	p.V365M	ENST00000307078	NM_004655.3	365	Gtg/Atg																																																																															
INSR	3643	MSKCC	GRCh37	19	7125341	7125341	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	126	574	0	ENST00000302850.5:c.3211T>C	p.Phe1071Leu	p.F1071L	ENST00000302850	NM_000208.2	1071	Ttc/Ctc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610156	10610156	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	109	632	0	ENST00000171111.5:c.554T>C	p.Ile185Thr	p.I185T	ENST00000171111	NM_203500.1	185	aTc/aCc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144509	11144509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	76	594	1	ENST00000344626.4:c.3841G>A	p.Val1281Ile	p.V1281I	ENST00000344626	NM_003072.3	1281	Gtc/Atc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281482	15281482	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	96	352	0	ENST00000263388.2:c.4891G>T	p.Gly1631Trp	p.G1631W	ENST00000263388	NM_000435.2	1631	Ggg/Tgg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945810	17945810	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	36	525	0	ENST00000458235.1:c.2050C>T	p.Leu684Phe	p.L684F	ENST00000458235	NM_000215.3	684	Ctc/Ttc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213980	36213980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	172	667	0	ENST00000222270.7:c.2806T>C	p.Ser936Pro	p.S936P	ENST00000222270	NM_014727.1	936	Tca/Cca																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714640	52714640	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	50	503	0	ENST00000322088.6:c.398A>G	p.Lys133Arg	p.K133R	ENST00000322088	NM_014225.5	133	aAg/aGg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251724	212251724	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770460785		P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	58	274	0	ENST00000342788.4:c.3335G>A	p.Arg1112His	p.R1112H	ENST00000342788	NM_005235.2	1112	cGc/cAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47058590	47058590	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	40	506	0	ENST00000409792.3:c.7688T>C	p.Leu2563Ser	p.L2563S	ENST00000409792	NM_014159.6	2563	tTa/tCa																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383988	84383988	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	88	539	3	ENST00000321945.7:c.864del	p.Pro289GlnfsTer13	p.P289Qfs*13	ENST00000321945	NM_139076.2	288	ttT/tt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540904	187540904	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	20	313	0	ENST00000441802.2:c.6836A>G	p.Asn2279Ser	p.N2279S	ENST00000441802	NM_005245.3	2279	aAc/aGc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149499653	149499653	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	89	502	0	ENST00000261799.4:c.2620A>C	p.Ser874Arg	p.S874R	ENST00000261799	NM_002609.3	874	Agc/Cgc																																																																															
CCND3	896	MSKCC	GRCh37	6	41908131	41908131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	71	499	2	ENST00000372991.4:c.391G>A	p.Ala131Thr	p.A131T	ENST00000372991	NM_001760.3	131	Gct/Act																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151864310	151864310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	63	408	1	ENST00000262189.6:c.9671G>A	p.Arg3224His	p.R3224H	ENST00000262189	NM_170606.2	3224	cGt/cAt																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538751	23538751	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	23	249	0	ENST00000380871.4:c.688A>G	p.Ser230Gly	p.S230G	ENST00000380871	NM_006167.3	230	Agc/Ggc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141572580	141572580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	111	442	2	ENST00000220592.5:c.490G>A	p.Val164Met	p.V164M	ENST00000220592	NM_012154.3	164	Gtg/Atg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87359969	87359969	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	63	350	0	ENST00000277120.3:c.1277C>A	p.Thr426Asn	p.T426N	ENST00000277120		426	aCc/aAc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137309037	137309037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	169	699	0	ENST00000481739.1:c.644G>A	p.Arg215Gln	p.R215Q	ENST00000481739	NM_002957.4	215	cGg/cAg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53254069	53254069	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	40	199	0	ENST00000375401.3:c.3G>A	p.Met1?	p.M1?	ENST00000375401	NM_004187.3	1	atG/atA																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631102	69631102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121917704		P-0018149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	41	588	1	ENST00000334134.2:c.310C>T	p.Arg104Ter	p.R104*	ENST00000334134	NM_005247.2	104	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	12	716	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	190	597	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0018153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	135	511	3	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0018153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	104	267	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223230	5223230	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	130	651	1	ENST00000357368.4:c.2573C>G	p.Thr858Ser	p.T858S	ENST00000357368	NM_002850.3	858	aCc/aGc																																																																															
TEK	7010	MSKCC	GRCh37	9	27206737	27206737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	85	402	0	ENST00000380036.4:c.2522C>T	p.Ala841Val	p.A841V	ENST00000380036	NM_000459.3	841	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	136	600	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0018156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	115	621	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290270	15290270	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	62	724	0	ENST00000263388.2:c.3365A>G	p.Asp1122Gly	p.D1122G	ENST00000263388	NM_000435.2	1122	gAc/gGc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046359	69046359	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	45	382	0	ENST00000288368.4:c.3832T>G	p.Phe1278Val	p.F1278V	ENST00000288368	NM_024870.2	1278	Ttc/Gtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0018157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	56	538	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0018157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	34	294	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097731	8097731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	73	420	3	ENST00000346208.3:c.113C>T	p.Ala38Val	p.A38V	ENST00000346208		38	gCg/gTg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	463369	463369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	35	478	0	ENST00000399788.2:c.902G>A	p.Arg301Gln	p.R301Q	ENST00000399788	NM_001042603.1	301	cGg/cAg																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145121	58145121	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	35	351	0	ENST00000257904.6:c.223A>T	p.Met75Leu	p.M75L	ENST00000257904	NM_000075.3	75	Atg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577124	+	frameshift_variant	Frame_Shift_Del	DEL	CACGCAC	CACGCAC	-			P-0018157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	76	673	0	ENST00000269305.4:c.814_820delGTGCGTG	p.Val272PhefsTer71	p.V272Ffs*71	ENST00000269305	NM_001126112.2	272	GTGCGTGtt/tt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252965	36252966	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0018157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	63	444	0	ENST00000300305.3:c.395_396dupTG	p.Met133Ter	p.M133*	ENST00000300305		132	-/TG																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793614	89793614	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	75	396	0	ENST00000336032.3:c.683C>G	p.Ala228Gly	p.A228G	ENST00000336032	NM_006813.2	228	gCa/gGa																																																																															
MET	4233	MSKCC	GRCh37	7	116412023	116412023	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1144	137	886	0	ENST00000397752.3:c.3008A>T	p.Tyr1003Phe	p.Y1003F	ENST00000397752	NM_000245.2	1003	tAc/tTc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459437	50459437	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	39	421	0	ENST00000331340.3:c.726A>T	p.Glu242Asp	p.E242D	ENST00000331340	NM_006060.4	242	gaA/gaT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513218	106513218	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	49	416	0	ENST00000359195.3:c.2122C>A	p.His708Asn	p.H708N	ENST00000359195	NM_002649.2	708	Cac/Aac																																																																															
MET	4233	MSKCC	GRCh37	7	116417464	116417464	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	76	531	0	ENST00000397752.3:c.3281A>G	p.His1094Arg	p.H1094R	ENST00000397752	NM_000245.2	1094	cAt/cGt																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650815	48650815	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	47	909	2	ENST00000376670.3:c.684C>A	p.Cys228Ter	p.C228*	ENST00000376670	NM_002049.3	228	tgC/tgA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89725043	89725043	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0018174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	39	321	1	ENST00000371953.3:c.1027delG		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38061220	38061243	+	inframe_deletion	In_Frame_Del	DEL	CGTTCTCGAACATGTTGCCGGAGT	CGTTCTCGAACATGTTGCCGGAGT	-			P-0018174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	82	577	0	ENST00000250448.2:c.746_769delACTCCGGCAACATGTTCGAGAACG	p.Asp249_Asn256del	p.D249_N256del	ENST00000250448	NM_004496.3	249	gACTCCGGCAACATGTTCGAGAACGgc/ggc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0018179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	1300	798	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0018179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	184	930	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627439	14627440	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTT			P-0018179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	159	695	0	ENST00000254322.2:c.628_630dupAAG	p.Lys210dup	p.K210dup	ENST00000254322	NM_006145.1	210	-/AAG																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267360	198267360	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	418	919	0	ENST00000335508.6:c.1997A>C	p.Lys666Thr	p.K666T	ENST00000335508	NM_012433.2	666	aAg/aCg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100312	27100312	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	851	972	4	ENST00000324856.7:c.4024C>T	p.Gln1342Ter	p.Q1342*	ENST00000324856	NM_006015.4	1342	Cag/Tag																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029493	14029493	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	155	659	0	ENST00000311895.7:c.1704G>C	p.Arg568Ser	p.R568S	ENST00000311895	NM_005236.2	568	agG/agC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578522	7578522	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	312	1116	1	ENST00000269305.4:c.408A>T	p.Gln136His	p.Q136H	ENST00000269305	NM_001126112.2	136	caA/caT																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138921	64138921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	46	711	3	ENST00000334205.4:c.2288G>A	p.Arg763His	p.R763H	ENST00000334205	NM_003942.2	763	cGc/cAc																																																																															
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	170	433	1	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0018191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	206	613	1	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
STAT5B	6777	MSKCC	GRCh37	17	40359721	40359721	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	132	857	1	ENST00000293328.3:c.1932G>T	p.Met644Ile	p.M644I	ENST00000293328	NM_012448.3	644	atG/atT																																																																															
ABL1	25	MSKCC	GRCh37	9	133760249	133760264	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTCAGGTGCACCAG	GGCTCAGGTGCACCAG	-			P-0018191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	85	590	0	ENST00000318560.5:c.2574_2589delCTCAGGTGCACCAGGG	p.Ser859AlafsTer12	p.S859Afs*12	ENST00000318560	NM_005157.4	858	GGCTCAGGTGCACCAGgg/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913535		P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	125	1005	0	ENST00000256078.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000256078	NM_033360.2	13	Ggc/Cgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576885	7576885	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	84	827	0	ENST00000269305.4:c.961A>T	p.Lys321Ter	p.K321*	ENST00000269305	NM_001126112.2	321	Aaa/Taa																																																																															
PGR	5241	MSKCC	GRCh37	11	100999147	100999147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	60	1144	0	ENST00000325455.5:c.655G>A	p.Val219Met	p.V219M	ENST00000325455	NM_001202474.3	219	Gtg/Atg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287300	46287300	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	50	807	0	ENST00000334344.6:c.5245A>T	p.Arg1749Ter	p.R1749*	ENST00000334344	NM_152641.2	1749	Aga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820626	3820626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	45	866	0	ENST00000262367.5:c.2825C>T	p.Pro942Leu	p.P942L	ENST00000262367	NM_004380.2	942	cCt/cTt																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73774729	73774729	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	29	163	0	ENST00000254810.4:c.358A>G	p.Ile120Val	p.I120V	ENST00000254810	NM_005324.3	120	Atc/Gtc																																																																															
ALK	238	MSKCC	GRCh37	2	29419642	29419642	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	122	846	1	ENST00000389048.3:c.4158C>A	p.Cys1386Ter	p.C1386*	ENST00000389048	NM_004304.4	1386	tgC/tgA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467965	66467965	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	52	637	0	ENST00000273854.3:c.304T>A	p.Cys102Ser	p.C102S	ENST00000273854	NM_004439.5	102	Tgc/Agc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524644	187524644	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	100	1039	0	ENST00000441802.2:c.11036A>T	p.Gln3679Leu	p.Q3679L	ENST00000441802	NM_005245.3	3679	cAg/cTg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131972893	131972893	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	47	632	0	ENST00000265335.6:c.3475+1G>T		p.X1159_splice	ENST00000265335		1159																																																																																
PDGFRB	5159	MSKCC	GRCh37	5	149504352	149504352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	72	877	2	ENST00000261799.4:c.1850C>T	p.Ala617Val	p.A617V	ENST00000261799	NM_002609.3	617	gCc/gTc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508196	106508196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	42	352	0	ENST00000359195.3:c.190C>A	p.His64Asn	p.H64N	ENST00000359195	NM_002649.2	64	Cac/Aac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389360	8389360	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	28	792	0	ENST00000356435.5:c.4258A>T	p.Arg1420Trp	p.R1420W	ENST00000356435		1420	Agg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0018196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	508	816	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0018196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	473	749	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056406	26056406	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	56	363	0	ENST00000343677.2:c.251T>C	p.Leu84Pro	p.L84P	ENST00000343677	NM_005319.3	84	cTc/cCc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50811826	50811826	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	146	750	0	ENST00000398568.2:c.1103C>A	p.Ser368Ter	p.S368*	ENST00000398568	NM_001042412.1	368	tCa/tAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47144879	47144879	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	105	628	0	ENST00000409792.3:c.4874G>C	p.Arg1625Pro	p.R1625P	ENST00000409792	NM_014159.6	1625	cGt/cCt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151864391	151864392	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	113	590	0	ENST00000262189.6:c.9589dupT	p.Tyr3197LeufsTer3	p.Y3197Lfs*3	ENST00000262189	NM_170606.2	3197	tat/tTat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0018201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	249	668	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs879253911		P-0018201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	49	582	0	ENST00000269305.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000269305	NM_001126112.2	180	Gag/Aag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044550	47044550	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	82	846	1	ENST00000329236.7:c.1813G>T	p.Glu605Ter	p.E605*	ENST00000329236	NM_001204466.1	605	Gag/Tag																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439798	51439798	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	40	313	0	ENST00000262662.1:c.364delC	p.Leu122TrpfsTer2	p.L122Wfs*2	ENST00000262662		121	ttC/tt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685312	86685312	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	30	196	0	ENST00000274376.6:c.3028C>T	p.Arg1010Ter	p.R1010*	ENST00000274376	NM_002890.2	1010	Cga/Tga																																																																															
DDR2	4921	MSKCC	GRCh37	1	162741901	162741901	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	51	454	0	ENST00000367921.3:c.1592G>T	p.Gly531Val	p.G531V	ENST00000367921	NM_006182.2	531	gGa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578380	7578380	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs72661117		P-0018201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	44	531	0	ENST00000269305.4:c.550G>A	p.Asp184Asn	p.D184N	ENST00000269305	NM_001126112.2	184	Gat/Aat																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467933	66467934	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0018201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	51	534	0	ENST00000273854.3:c.335_336delGGinsTT	p.Trp112Phe	p.W112F	ENST00000273854	NM_004439.5	112	tGG/tTT																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685339	86685339	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	27	145	0	ENST00000274376.6:c.3055C>T	p.Gln1019Ter	p.Q1019*	ENST00000274376	NM_002890.2	1019	Cag/Tag																																																																															
SESN1	27244	MSKCC	GRCh37	6	109314097	109314097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	92	628	0	ENST00000436639.2:c.1126G>A	p.Glu376Lys	p.E376K	ENST00000436639	NM_014454.2	376	Gaa/Aaa																																																																															
RXRA	6256	MSKCC	GRCh37	9	137309018	137309018	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	107	769	0	ENST00000481739.1:c.625C>G	p.Arg209Gly	p.R209G	ENST00000481739	NM_002957.4	209	Cgg/Ggg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	32	673	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0018205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	840	714	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986625	36986629	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGC	CCTGC	-			P-0018205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	96	260	0	ENST00000354822.5:c.1060_1064delGCAGG	p.Ala354ProfsTer83	p.A354Pfs*83	ENST00000354822	NM_001079668.2	354	GCAGGc/c																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127442	55127442	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	147	775	0	ENST00000257290.5:c.230A>G	p.Asn77Ser	p.N77S	ENST00000257290	NM_006206.4	77	aAc/aGc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922695	44922695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	265	514	0	ENST00000377967.4:c.1556delG	p.Arg519HisfsTer29	p.R519Hfs*29	ENST00000377967	NM_021140.2	519	cGa/ca																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38282115	38282115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	507	838	1	ENST00000425967.3:c.941C>T	p.Pro314Leu	p.P314L	ENST00000425967	NM_001174067.1	314	cCg/cTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720857	89720857	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	283	417	0	ENST00000371953.3:c.1008C>A	p.Tyr336Ter	p.Y336*	ENST00000371953	NM_000314.4	336	taC/taA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151896421	151896422	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATCC			P-0018209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	279	636	0	ENST00000262189.6:c.4212_4215dupGGAT	p.Pro1406GlyfsTer9	p.P1406Gfs*9	ENST00000262189	NM_170606.2	1405	-/GGAT																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5549563	5549563	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	451	807	0	ENST00000397747.3:c.590C>G	p.Thr197Ser	p.T197S	ENST00000397747	NM_025239.3	197	aCt/aGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	165	757	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	90	605	1	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350291	15350291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	97	631	1	ENST00000263377.2:c.3488G>A	p.Arg1163Gln	p.R1163Q	ENST00000263377	NM_058243.2	1163	cGg/cAg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52685769	52685769	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	80	707	0	ENST00000394830.3:c.703delC	p.Gln235ArgfsTer18	p.Q235Rfs*18	ENST00000394830	NM_018313.4	235	Cag/ag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094373	27094374	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTGGC			P-0018210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	78	537	0	ENST00000324856.7:c.3084_3088dupGGCCT	p.Phe1030TrpfsTer11	p.F1030Wfs*11	ENST00000324856	NM_006015.4	1027	-/CTGGC																																																																															
RET	5979	MSKCC	GRCh37	10	43612095	43612095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	76	607	1	ENST00000355710.3:c.2200G>A	p.Glu734Lys	p.E734K	ENST00000355710	NM_020975.4	734	Gaa/Aaa																																																																															
MGA	23269	MSKCC	GRCh37	15	42041696	42041696	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	40	600	0	ENST00000219905.7:c.5891C>A	p.Ala1964Asp	p.A1964D	ENST00000219905	NM_001164273.1	1964	gCt/gAt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678584	88678584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	32	330	0	ENST00000360948.2:c.952G>A	p.Glu318Lys	p.E318K	ENST00000360948	NM_001012338.2	318	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970917	21970917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	85	818	0	ENST00000304494.5:c.441delC	p.Ala148ArgfsTer45	p.A148Rfs*45	ENST00000304494	NM_000077.4	147	gcC/gc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	39	594	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	43	576	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967255	134967255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	39	666	1	ENST00000398015.3:c.2594G>A	p.Arg865Gln	p.R865Q	ENST00000398015	NM_004441.4	865	cGg/cAg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56174871	56174872	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	67	653	0	ENST00000399503.3:c.2031dupG	p.Arg678GlufsTer19	p.R678Efs*19	ENST00000399503	NM_005921.1	677	cag/caGg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945451	151945451	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	71	942	0	ENST00000262189.6:c.2068G>T	p.Glu690Ter	p.E690*	ENST00000262189	NM_170606.2	690	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0018217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	43	571	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727454	66727454	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	9	490	0	ENST00000307102.5:c.170A>C	p.Lys57Thr	p.K57T	ENST00000307102	NM_002755.3	57	aAg/aCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984375	72984375	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	123	415	0	ENST00000268489.5:c.3209T>A	p.Leu1070Ter	p.L1070*	ENST00000268489	NM_006885.3	1070	tTg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0018219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	312	891	4	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0018219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	336	914	3	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247243	153247243	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	341	827	0	ENST00000281708.4:c.1559A>G	p.Asp520Gly	p.D520G	ENST00000281708	NM_033632.3	520	gAt/gGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0018219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	337	1011	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0018219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	173	538	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101179	41101179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	153	878	1	ENST00000373198.4:c.1177G>A	p.Val393Met	p.V393M	ENST00000373198	NM_133170.3	393	Gtg/Atg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249507	153249507	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	171	921	0	ENST00000281708.4:c.1271delT	p.Val424AspfsTer6	p.V424Dfs*6	ENST00000281708	NM_033632.3	424	gTa/ga																																																																															
APC	324	MSKCC	GRCh37	5	112170747	112170747	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	301	830	0	ENST00000257430.4:c.1847delT	p.Leu616TrpfsTer14	p.L616Wfs*14	ENST00000257430	NM_000038.5	615	Ttt/tt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956723	68956723	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	457	773	0	ENST00000288368.4:c.841C>T	p.Arg281Trp	p.R281W	ENST00000288368	NM_024870.2	281	Cgg/Tgg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69031730	69031730	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	185	946	0	ENST00000288368.4:c.3485T>G	p.Leu1162Arg	p.L1162R	ENST00000288368	NM_024870.2	1162	cTt/cGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830864	72830864	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	225	706	0	ENST00000268489.5:c.5717delA	p.Lys1906ArgfsTer8	p.K1906Rfs*8	ENST00000268489	NM_006885.3	1906	aAg/ag																																																																															
MYC	4609	MSKCC	GRCh37	8	128752679	128752681	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0018221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	119	430	0	ENST00000377970.2:c.841_843delTCT	p.Ser281del	p.S281del	ENST00000377970	NM_002467.4	280	gtTTCt/gtt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099977	157099977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	140	376	0	ENST00000346085.5:c.914G>A	p.Gly305Asp	p.G305D	ENST00000346085	NM_020732.3	305	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	94	844	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	106	895	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
FLT3	2322	MSKCC	GRCh37	13	28602333	28602333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	27	637	0	ENST00000241453.7:c.2035G>T	p.Gly679Trp	p.G679W	ENST00000241453	NM_004119.2	679	Ggg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603147	48603147	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0018226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	68	619	0	ENST00000342988.3:c.1447+1G>T		p.X483_splice	ENST00000342988	NM_005359.5	483																																																																																
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	157	598	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032093	10032093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	170	675	1	ENST00000330684.3:c.730C>T	p.Arg244Cys	p.R244C	ENST00000330684	NM_001134407.1	244	Cgc/Tgc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115852	8115853	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	180	751	0	ENST00000346208.3:c.1199dupT	p.Met400IlefsTer107	p.M400Ifs*107	ENST00000346208		400	atg/aTtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	494	701	0	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841306	15841306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	161	778	2	ENST00000307771.7:c.1390C>T	p.Arg464Cys	p.R464C	ENST00000307771	NM_005089.3	464	Cgt/Tgt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462090	120462090	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2644	148	643	0	ENST00000256646.2:c.5626A>G	p.Thr1876Ala	p.T1876A	ENST00000256646	NM_024408.3	1876	Act/Gct																																																																															
SRC	6714	MSKCC	GRCh37	20	36014528	36014529	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0018236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	163	793	0	ENST00000358208.4:c.302_303delCA	p.Thr101ArgfsTer48	p.T101Rfs*48	ENST00000358208		101	ACa/a																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932696	39932696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	184	1090	0	ENST00000378444.4:c.1903C>T	p.Pro635Ser	p.P635S	ENST00000378444	NM_001123385.1	635	Cca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0018237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	215	813	1	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112170851	112170851	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	69	756	0	ENST00000257430.4:c.1947delT	p.Asn649LysfsTer8	p.N649Kfs*8	ENST00000257430	NM_000038.5	649	aaT/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0018241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	156	588	2	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0018241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	141	702	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435202	18435203	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	37	465	0	ENST00000266497.5:c.187_188insC	p.Phe63SerfsTer18	p.F63Sfs*18	ENST00000266497		63	ttt/tCtt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182509	99182509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	55	544	0	ENST00000074304.5:c.2312G>A	p.Arg771Gln	p.R771Q	ENST00000074304	NM_001134224.1	771	cGg/cAg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191299	185191299	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	28	462	0	ENST00000265026.3:c.2180A>C	p.Asp727Ala	p.D727A	ENST00000265026	NM_004721.4	727	gAc/gCc																																																																															
TEK	7010	MSKCC	GRCh37	9	27213507	27213507	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	43	547	0	ENST00000380036.4:c.2903G>C	p.Arg968Thr	p.R968T	ENST00000380036	NM_000459.3	968	aGa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1131691025		P-0018242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	238	586	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																															
ALK	238	MSKCC	GRCh37	2	29443613	29443613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	307	696	0	ENST00000389048.3:c.3604G>A	p.Gly1202Arg	p.G1202R	ENST00000389048	NM_004304.4	1202	Gga/Aga																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662428	227662428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	207	459	0	ENST00000305123.5:c.1027G>A	p.Asp343Asn	p.D343N	ENST00000305123	NM_005544.2	343	Gac/Aac																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509111	106509111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	207	605	0	ENST00000359195.3:c.1105G>A	p.Asp369Asn	p.D369N	ENST00000359195	NM_002649.2	369	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	67	759	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	234	808	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	150	843	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	52	566	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928225	178928225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	70	525	0	ENST00000263967.3:c.1411C>G	p.Pro471Ala	p.P471A	ENST00000263967	NM_006218.2	471	Cca/Gca																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740365	58740365	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	87	597	2	ENST00000305921.3:c.1270G>T	p.Glu424Ter	p.E424*	ENST00000305921	NM_003620.3	424	Gag/Tag																																																																															
RB1	5925	MSKCC	GRCh37	13	48951171	48951171	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	317	548	0	ENST00000267163.4:c.1332+1G>A		p.X444_splice	ENST00000267163	NM_000321.2	444																																																																																
IKZF1	10320	MSKCC	GRCh37	7	50468309	50468309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1132	80	681	2	ENST00000331340.3:c.1544G>A	p.Arg515His	p.R515H	ENST00000331340	NM_006060.4	515	cGc/cAc																																																																															
SDHB	6390	MSKCC	GRCh37	1	17371347	17371347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	88	658	1	ENST00000375499.3:c.109C>T	p.Pro37Ser	p.P37S	ENST00000375499	NM_003000.2	37	Ccc/Tcc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166638	118166638	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	96	429	0	ENST00000369448.3:c.1148C>G	p.Pro383Arg	p.P383R	ENST00000369448	NM_017709.3	383	cCt/cGt																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206666432	206666432	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	38	609	0	ENST00000367120.3:c.1912G>T	p.Val638Phe	p.V638F	ENST00000367120	NM_014002.3	638	Gtc/Ttc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885238	111885238	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	64	648	0	ENST00000341259.2:c.1126C>G	p.Gln376Glu	p.Q376E	ENST00000341259	NM_005475.2	376	Cag/Gag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63526171	63526171	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	62	934	0	ENST00000307078.5:c.2455G>C	p.Glu819Gln	p.E819Q	ENST00000307078	NM_004655.3	819	Gag/Cag																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257844	19257844	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	158	755	0	ENST00000162023.5:c.541+1G>A		p.X181_splice	ENST00000162023		181																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36211246	36211246	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1557	143	1119	0	ENST00000222270.7:c.997G>C	p.Glu333Gln	p.E333Q	ENST00000222270	NM_014727.1	333	Gag/Cag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211363	36211363	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1208	132	802	0	ENST00000222270.7:c.1114G>C	p.Glu372Gln	p.E372Q	ENST00000222270	NM_014727.1	372	Gaa/Caa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033714	48033720	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGAGG	CCAGAGG	-			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	78	697	0	ENST00000234420.5:c.3925_3931delCCAGAGG	p.Pro1309LysfsTer16	p.P1309Kfs*16	ENST00000234420	NM_000179.2	1309	CCAGAGGaa/aa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790168	40790168	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	109	556	0	ENST00000373198.4:c.2563G>T	p.Gly855Trp	p.G855W	ENST00000373198	NM_133170.3	855	Ggg/Tgg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513282	44513293	+	inframe_deletion	In_Frame_Del	DEL	CCACCGCCACCG	CCACCGCCACCG	-			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	81	856	0	ENST00000291552.4:c.642_653delCGGTGGCGGTGG	p.Gly220_Gly223del	p.G220_G223del	ENST00000291552	NM_006758.2	214	ggCGGTGGCGGTGGt/ggt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439855	52439855	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	111	625	0	ENST00000460680.1:c.857A>T	p.Lys286Met	p.K286M	ENST00000460680	NM_004656.3	286	aAg/aTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187531098	187531098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	105	592	0	ENST00000441802.2:c.9925G>A	p.Asp3309Asn	p.D3309N	ENST00000441802	NM_005245.3	3309	Gat/Aat																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225734	26225734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	238	615	0	ENST00000360408.1:c.352G>T	p.Val118Leu	p.V118L	ENST00000360408	NM_003532.2	118	Gtg/Ttg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039349	47039349	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	96	880	0	ENST00000329236.7:c.742delG	p.Val248CysfsTer10	p.V248Cfs*10	ENST00000329236	NM_001204466.1	247	gcG/gc																																																																															
MED12	9968	MSKCC	GRCh37	X	70342440	70342440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	43	646	0	ENST00000374080.3:c.1331G>A	p.Cys444Tyr	p.C444Y	ENST00000374080		444	tGc/tAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76814203	76814203	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	83	728	0	ENST00000373344.5:c.6441T>A	p.Ser2147Arg	p.S2147R	ENST00000373344	NM_000489.3	2147	agT/agA																																																																															
STAG2	10735	MSKCC	GRCh37	X	123184087	123184087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	115	555	0	ENST00000218089.9:c.945G>T	p.Trp315Cys	p.W315C	ENST00000218089	NM_001042749.1	315	tgG/tgT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018246-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	111	783	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044850	47044850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018246-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			590	207	969	0	ENST00000329236.7:c.1942C>T	p.Arg648Ter	p.R648*	ENST00000329236	NM_001204466.1	648	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575152	48575152	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018246-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			153	62	523	0	ENST00000342988.3:c.346C>T	p.Gln116Ter	p.Q116*	ENST00000342988	NM_005359.5	116	Cag/Tag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440700	56440726	+	inframe_deletion	In_Frame_Del	DEL	ATCAGCTTCTCAGCGTCATTACCCCAG	ATCAGCTTCTCAGCGTCATTACCCCAG	-			P-0018246-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	164	809	0	ENST00000407977.2:c.492_518del	p.Ile164_Leu172del	p.I164_L172del	ENST00000407977		164	atCTGGGGTAATGACGCTGAGAAGCTGATg/atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	268	795	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259262	89259262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	168	441	2	ENST00000336596.2:c.406C>T	p.Arg136Ter	p.R136*	ENST00000336596	NM_005233.5	136	Cga/Tga																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	122	420	0	ENST00000349496.5:c.97T>G	p.Ser33Ala	p.S33A	ENST00000349496	NM_001904.3	33	Tct/Gct																																																																															
BCOR	54880	MSKCC	GRCh37	X	39914723	39914723	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	167	638	0	ENST00000378444.4:c.4639C>T	p.Arg1547Ter	p.R1547*	ENST00000378444	NM_001123385.1	1547	Cga/Tga																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206661272	206661272	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0018247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	186	687	0	ENST00000367120.3:c.1638T>A	p.Cys546Ter	p.C546*	ENST00000367120	NM_014002.3	546	tgT/tgA																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870966	12870966	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	133	425	0	ENST00000228872.4:c.193C>T	p.Gln65Ter	p.Q65*	ENST00000228872	NM_004064.3	65	Cag/Tag																																																																															
TSHR	7253	MSKCC	GRCh37	14	81554335	81554335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	226	816	3	ENST00000298171.2:c.355C>T	p.Pro119Ser	p.P119S	ENST00000298171	NM_000369.2	119	Cct/Tct																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351899	89351899	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	316	967	1	ENST00000301030.4:c.1051G>T	p.Glu351Ter	p.E351*	ENST00000301030	NM_001256183.1	351	Gag/Tag																																																																															
PARK2	5071	MSKCC	GRCh37	6	161781129	161781129	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	137	628	0	ENST00000366898.1:c.1276delG	p.Glu426LysfsTer9	p.E426Kfs*9	ENST00000366898	NM_004562.2	426	Gaa/aa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945034	151945034	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	29	299	0	ENST00000262189.6:c.2485G>T	p.Ala829Ser	p.A829S	ENST00000262189	NM_170606.2	829	Gct/Tct																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507419	8507419	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	46	377	0	ENST00000356435.5:c.1559T>C	p.Leu520Pro	p.L520P	ENST00000356435		520	cTa/cCa																																																																															
ATRX	546	MSKCC	GRCh37	X	76855019	76855022	+	frameshift_variant	Frame_Shift_Del	DEL	TTTT	TTTT	-			P-0018247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	61	657	0	ENST00000373344.5:c.5814_5817delAAAA	p.Lys1939IlefsTer15	p.K1939Ifs*15	ENST00000373344	NM_000489.3	1938	aaAAAA/aa																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0018248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	412	573	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	180	822	3	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0018248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	224	761	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	158	333	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108204643	108204643	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	183	550	0	ENST00000278616.4:c.7958T>G	p.Ile2653Ser	p.I2653S	ENST00000278616	NM_000051.3	2653	aTt/aGt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89816217	89816217	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0018248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	583	777	1	ENST00000389301.3:c.3160A>T	p.Arg1054Ter	p.R1054*	ENST00000389301	NM_000135.2	1054	Aga/Tga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554689	63554689	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	191	459	0	ENST00000307078.5:c.50T>G	p.Phe17Cys	p.F17C	ENST00000307078	NM_004655.3	17	tTc/tGc																																																																															
CALR	811	MSKCC	GRCh37	19	13050902	13050902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	289	674	0	ENST00000316448.5:c.433C>T	p.His145Tyr	p.H145Y	ENST00000316448	NM_004343.3	145	Cat/Tat																																																																															
MITF	4286	MSKCC	GRCh37	3	69987147	69987147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	250	565	2	ENST00000352241.4:c.529G>A	p.Ala177Thr	p.A177T	ENST00000352241	NM_198159.2	177	Gca/Aca																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0018267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	275	630	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578523	7578523	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	241	756	0	ENST00000269305.4:c.407A>C	p.Gln136Pro	p.Q136P	ENST00000269305	NM_001126112.2	136	cAa/cCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0018267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	261	536	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	349	398	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097751	27097751	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	397	485	1	ENST00000324856.7:c.3344del	p.Pro1115GlnfsTer46	p.P1115Qfs*46	ENST00000324856	NM_006015.4	1114	Ccc/cc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913476		P-0018269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	232	559	1	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123247515	123247515	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	196	441	0	ENST00000358487.5:c.1976A>T	p.Lys659Met	p.K659M	ENST00000358487	NM_000141.4	659	aAg/aTg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870985	12870986	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0018269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	464	272	0	ENST00000228872.4:c.214_215dup	p.Lys73AlafsTer47	p.K73Afs*47	ENST00000228872	NM_004064.3	71	gag/gaGGg																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911501	101911501	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	152	361	0	ENST00000374994.4:c.1426T>A	p.Tyr476Asn	p.Y476N	ENST00000374994	NM_004612.2	476	Tat/Aat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0018271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	234	539	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0018271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	391	674	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603148	48603148	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0018271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	371	346	0	ENST00000342988.3:c.1447+2T>C		p.X483_splice	ENST00000342988	NM_005359.5	483																																																																																
TSC2	7249	MSKCC	GRCh37	16	2130234	2130234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1393	262	649	0	ENST00000219476.3:c.3466C>T	p.Pro1156Ser	p.P1156S	ENST00000219476	NM_000548.3	1156	Cca/Tca																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778645	3778645	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	175	447	0	ENST00000262367.5:c.6403C>T	p.Gln2135Ter	p.Q2135*	ENST00000262367	NM_004380.2	2135	Cag/Tag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944247	81944247	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	608	632	0	ENST00000359376.3:c.1856A>T	p.Glu619Val	p.E619V	ENST00000359376	NM_002661.3	619	gAg/gTg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24145607	24145608	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	TGGT			P-0018271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	423	373	0	ENST00000263121.7:c.627_628+2dupTGGT		p.N209fs	ENST00000263121	NM_003073.3	209	aat/aaTGGTt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678722	52678722	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0018271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	212	584	0	ENST00000394830.3:c.897G>C	p.Met299Ile	p.M299I	ENST00000394830	NM_018313.4	299	atG/atC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249091	55249091	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519861		P-0018271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	253	574	0	ENST00000275493.2:c.2389T>A	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	Tgc/Agc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045476	47045476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	516	329	0	ENST00000329236.7:c.2209C>T	p.Arg737Trp	p.R737W	ENST00000329236	NM_001204466.1	737	Cgg/Tgg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589631	67589632	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATTATATGAAGA			P-0018273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	229	373	0	ENST00000274335.5:c.1397_1408dupTATATGAAGAAT	p.Leu466_Glu469dup	p.L466_E469dup	ENST00000274335		466	aga/agATTATATGAAGAa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942593	17942593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	200	418	2	ENST00000458235.1:c.2695C>T	p.Arg899Trp	p.R899W	ENST00000458235	NM_000215.3	899	Cgg/Tgg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160671	56160679	+	inframe_deletion	In_Frame_Del	DEL	ACTGTACTT	ACTGTACTT	-			P-0018273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	362	435	0	ENST00000399503.3:c.949_957delTACTTACTG	p.Tyr317_Leu319del	p.Y317_L319del	ENST00000399503	NM_005921.1	315	agACTGTACTTa/aga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178663	56178664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGAGAAG			P-0018273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	104	219	0	ENST00000399503.3:c.3637_3643dupGGAGAAG	p.Asp1215GlyfsTer26	p.D1215Gfs*26	ENST00000399503	NM_005921.1	1212	-/GGAGAAG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0018277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	65	470	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0018277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	49	337	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	62	272	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0018277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	59	439	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604789	48604789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	106	370	0	ENST00000342988.3:c.1611C>G	p.Asp537Glu	p.D537E	ENST00000342988	NM_005359.5	537	gaC/gaG																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0018277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	205	403	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	339	376	2	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
RAF1	5894	MSKCC	GRCh37	3	12627250	12627250	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	106	424	0	ENST00000251849.4:c.1466T>C	p.Leu489Ser	p.L489S	ENST00000251849	NM_002880.3	489	tTg/tCg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153271193	153271193	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0018277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	85	270	0	ENST00000281708.4:c.584+1G>A		p.X195_splice	ENST00000281708	NM_033632.3	195																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151879673	151879673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	29	104	0	ENST00000262189.6:c.5272C>T	p.Arg1758Cys	p.R1758C	ENST00000262189	NM_170606.2	1758	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	1156	546	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0018278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	463	627	3	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332868	152332868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	230	318	0	ENST00000206249.3:c.1174G>A	p.Val392Ile	p.V392I	ENST00000206249	NM_000125.3	392	Gtc/Atc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741349	17741349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	380	531	2	ENST00000250003.3:c.20C>T	p.Pro7Leu	p.P7L	ENST00000250003	NM_002478.4	7	cCg/cTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27022914	27022948	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCGCCGCCAGCAGCCTGGGCAACCCGCCGCCG	CCGCCGCCGCCAGCAGCCTGGGCAACCCGCCGCCG	-			P-0018278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	70	41	0	ENST00000324856.7:c.28_62delGCCAGCAGCCTGGGCAACCCGCCGCCGCCGCCGCC	p.Ala10LeufsTer89	p.A10Lfs*89	ENST00000324856	NM_006015.4	7	cCCGCCGCCGCCAGCAGCCTGGGCAACCCGCCGCCG/c																																																																															
SOS1	6654	MSKCC	GRCh37	2	39283859	39283860	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0018278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	201	504	0	ENST00000402219.2:c.491_493dupTGG	p.Val164dup	p.V164dup	ENST00000402219	NM_005633.3	164	gca/gTGGca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974709	21974727	+	frameshift_variant	Frame_Shift_Del	DEL	CGTTGGGCAGCGCCCCCGC	CGTTGGGCAGCGCCCCCGC	-			P-0018278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	149	352	0	ENST00000304494.5:c.100_118delGCGGGGGCGCTGCCCAACG	p.Ala34HisfsTer13	p.A34Hfs*13	ENST00000304494	NM_000077.4	34	GCGGGGGCGCTGCCCAACGca/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0018279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	502	662	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	337	552	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457272	67457289	+	inframe_deletion	In_Frame_Del	DEL	GCTCCCTCATGTCATCTA	GCTCCCTCATGTCATCTA	-			P-0018279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	323	401	0	ENST00000327367.4:c.246_263delGCTCCCTCATGTCATCTA	p.Leu83_Tyr88del	p.L83_Y88del	ENST00000327367	NM_005902.3	82	ggGCTCCCTCATGTCATCTAc/ggc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23634429	23634429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	293	464	0	ENST00000261584.4:c.2857G>A	p.Asp953Asn	p.D953N	ENST00000261584	NM_024675.3	953	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	60	616	0	ENST00000269305.4:c.824G>C	p.Cys275Ser	p.C275S	ENST00000269305	NM_001126112.2	275	tGt/tCt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644835	67644835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	33	378	0	ENST00000264010.4:c.100G>A	p.Glu34Lys	p.E34K	ENST00000264010	NM_006565.3	34	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0018281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	58	483	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	42	455	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	106	427	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1151	88	378	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679243	88679243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	80	425	0	ENST00000360948.2:c.794C>A	p.Ala265Asp	p.A265D	ENST00000360948	NM_001012338.2	265	gCc/gAc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204578	128204578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	55	286	0	ENST00000341105.2:c.863C>A	p.Ser288Tyr	p.S288Y	ENST00000341105	NM_032638.4	288	tCc/tAc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523672	176523672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1337	115	449	1	ENST00000292408.4:c.2083G>A	p.Val695Met	p.V695M	ENST00000292408	NM_213647.1	695	Gtg/Atg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956799	68956799	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	74	333	0	ENST00000288368.4:c.917A>T	p.Glu306Val	p.E306V	ENST00000288368	NM_024870.2	306	gAa/gTa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411402	63411402	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	59	377	0	ENST00000330258.3:c.1765C>A	p.His589Asn	p.H589N	ENST00000330258	NM_152424.3	589	Cat/Aat																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	205	549	1	ENST00000369535.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caT																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584787	48584787	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	224	451	0	ENST00000342988.3:c.865C>T	p.Gln289Ter	p.Q289*	ENST00000342988	NM_005359.5	289	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920413	114920413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	181	332	0	ENST00000543371.1:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000543371	NM_001198531.1	452	Ggg/Agg																																																																															
APC	324	MSKCC	GRCh37	5	112175378	112175378	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	174	239	0	ENST00000257430.4:c.4087A>T	p.Lys1363Ter	p.K1363*	ENST00000257430	NM_000038.5	1363	Aaa/Taa																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874521	155874521	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0018285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	47	466	0	ENST00000368323.3:c.237+1G>T		p.X79_splice	ENST00000368323	NM_006912.5	79																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118363790	118363790	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	66	385	0	ENST00000534358.1:c.5023T>G	p.Leu1675Val	p.L1675V	ENST00000534358	NM_005933.3	1675	Tta/Gta																																																																															
CD276	80381	MSKCC	GRCh37	15	73994896	73994896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	11	23	0	ENST00000318443.5:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000318443	NM_001024736.1	127	cGg/cAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900611	3900611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	187	336	3	ENST00000262367.5:c.485C>T	p.Ala162Val	p.A162V	ENST00000262367	NM_004380.2	162	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579362	7579367	+	inframe_deletion	In_Frame_Del	DEL	AACCGT	AACCGT	-			P-0018285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	225	546	0	ENST00000269305.4:c.320_325delACGGTT	p.Tyr107_Gly108del	p.Y107_G108del	ENST00000269305	NM_001126112.2	107	tACGGTTtc/ttc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681669	30681669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	42	344	1	ENST00000376406.3:c.428G>A	p.Gly143Asp	p.G143D	ENST00000376406	NM_014641.2	143	gGc/gAc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549413	21549413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	148	184	0	ENST00000382592.4:c.2863G>A	p.Ala955Thr	p.A955T	ENST00000382592	NM_014572.2	955	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578376	7578379	+	frameshift_variant	Frame_Shift_Del	DEL	CTAT	CTAT	-			P-0018288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	98	361	0	ENST00000269305.4:c.551_554delATAG	p.Asp184AlafsTer62	p.D184Afs*62	ENST00000269305	NM_001126112.2	184	gATAGc/gc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094386	27094386	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	95	327	1	ENST00000324856.7:c.3094G>T	p.Glu1032Ter	p.E1032*	ENST00000324856	NM_006015.4	1032	Gag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254713	16254713	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	108	454	1	ENST00000375759.3:c.1978G>C	p.Glu660Gln	p.E660Q	ENST00000375759	NM_015001.2	660	Gaa/Caa																																																																															
ERF	2077	MSKCC	GRCh37	19	42754574	42754574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	184	579	1	ENST00000222329.4:c.166G>A	p.Val56Ile	p.V56I	ENST00000222329	NM_006494.2	56	Gtc/Atc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149506162	149506162	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	132	392	0	ENST00000261799.4:c.1595T>C	p.Val532Ala	p.V532A	ENST00000261799	NM_002609.3	532	gTg/gCg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873749	151873749	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0018288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	74	306	0	ENST00000262189.6:c.8789C>G	p.Ser2930Ter	p.S2930*	ENST00000262189	NM_170606.2	2930	tCa/tGa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873782	151873782	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0018288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	59	266	0	ENST00000262189.6:c.8756C>G	p.Ser2919Ter	p.S2919*	ENST00000262189	NM_170606.2	2919	tCa/tGa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68982089	68982089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	118	529	0	ENST00000288368.4:c.1463G>A	p.Arg488His	p.R488H	ENST00000288368	NM_024870.2	488	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0018294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	724	693	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518425	204518425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	300	431	0	ENST00000367182.3:c.1088G>A	p.Arg363Gln	p.R363Q	ENST00000367182	NM_001278516.1	363	cGa/cAa																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246670355	246670355	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0018294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	155	376	0	ENST00000388985.4:c.164+1G>A		p.X55_splice	ENST00000388985		55																																																																																
NFKBIA	4792	MSKCC	GRCh37	14	35871637	35871648	+	inframe_deletion	In_Frame_Del	DEL	TCATAGCTCTCC	TCATAGCTCTCC	-			P-0018294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	93	230	0	ENST00000216797.5:c.858_869delGGAGAGCTATGA	p.Glu286_Tyr289del	p.E286_Y289del	ENST00000216797	NM_020529.2	286	gaGGAGAGCTATGAc/gac																																																																															
APC	324	MSKCC	GRCh37	5	112174920	112174921	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0018294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	288	289	0	ENST00000257430.4:c.3631_3632del	p.Met1211ValfsTer5	p.M1211Vfs*5	ENST00000257430	NM_000038.5	1210	cAT/c																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992699	68992699	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	131	615	1	ENST00000288368.4:c.1664A>T	p.Lys555Ile	p.K555I	ENST00000288368	NM_024870.2	555	aAa/aTa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933361	39933361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	801	221	1	ENST00000378444.4:c.1238C>T	p.Thr413Ile	p.T413I	ENST00000378444	NM_001123385.1	413	aCa/aTa																																																																															
BTK	695	MSKCC	GRCh37	X	100630173	100630173	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141488935		P-0018294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	419	206	0	ENST00000308731.7:c.100G>A	p.Val34Met	p.V34M	ENST00000308731	NM_000061.2	34	Gtg/Atg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46211464	46211464	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	43	208	0	ENST00000334344.6:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000334344	NM_152641.2	144	Caa/Taa																																																																															
RAF1	5894	MSKCC	GRCh37	3	12660181	12660181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	218	526	1	ENST00000251849.4:c.40G>A	p.Gly14Ser	p.G14S	ENST00000251849	NM_002880.3	14	Ggt/Agt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41268793	41268793	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	153	489	0	ENST00000349496.5:c.1031T>A	p.Leu344Gln	p.L344Q	ENST00000349496	NM_001904.3	344	cTg/cAg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061217	38061235	+	protein_altering_variant	In_Frame_Del	DEL	AGCCGTTCTCGAACATGTT	AGCCGTTCTCGAACATGTT	C			P-0018302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	117	471	0	ENST00000250448.2:c.754_772delAACATGTTCGAGAACGGCTinsG	p.Asn252_Cys258delinsGly	p.N252_C258delinsG	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTgc/Ggc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0018306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	318	509	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104006	69104006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	161	501	1	ENST00000288368.4:c.4396G>A	p.Ala1466Thr	p.A1466T	ENST00000288368	NM_024870.2	1466	Gct/Act																																																																															
RET	5979	MSKCC	GRCh37	10	43572708	43572708	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0018306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	11	61	0	ENST00000355710.3:c.2T>C	p.Met1?	p.M1?	ENST00000355710	NM_020975.4	1	aTg/aCg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112884118	112884118	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	144	304	0	ENST00000351677.2:c.53A>C	p.Asn18Thr	p.N18T	ENST00000351677	NM_002834.3	18	aAc/aCc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817829	3817829	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	56	482	0	ENST00000262367.5:c.3142G>C	p.Val1048Leu	p.V1048L	ENST00000262367	NM_004380.2	1048	Gtg/Ctg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222263	53222263	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	128	315	0	ENST00000375401.3:c.4569G>T	p.Gln1523His	p.Q1523H	ENST00000375401	NM_004187.3	1523	caG/caT																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0018309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	232	527	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	154	654	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31016218	31016218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	92	451	0	ENST00000375687.4:c.464C>T	p.Ser155Phe	p.S155F	ENST00000375687	NM_015338.5	155	tCc/tTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860346	151860346	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	142	698	0	ENST00000262189.6:c.10316C>G	p.Ser3439Cys	p.S3439C	ENST00000262189	NM_170606.2	3439	tCt/tGt																																																																															
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	133	328	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913399		P-0018315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	125	312	3	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274090	10274090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	121	598	2	ENST00000330684.3:c.179C>T	p.Ala60Val	p.A60V	ENST00000330684	NM_001134407.1	60	gCg/gTg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40468851	40468851	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	248	568	0	ENST00000264657.5:c.2213G>C	p.Gly738Ala	p.G738A	ENST00000264657	NM_139276.2	738	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0018322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			96	24	652	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
POLE	5426	MSKCC	GRCh37	12	133218912	133218912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			249	16	526	2	ENST00000320574.5:c.5024G>A	p.Arg1675His	p.R1675H	ENST00000320574	NM_006231.2	1675	cGc/cAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044886	47044889	+	frameshift_variant	Frame_Shift_Del	DEL	AGTG	AGTG	-			P-0018322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			175	94	286	0	ENST00000329236.7:c.1980_1983del	p.Ser660ArgfsTer63	p.S660Rfs*63	ENST00000329236	NM_001204466.1	660	AGTGag/ag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053258	180053258	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			381	36	569	0	ENST00000261937.6:c.1111G>C	p.Asp371His	p.D371H	ENST00000261937	NM_182925.4	371	Gat/Cat																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978583	70978583	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			184	18	540	0	ENST00000276594.2:c.1070A>G	p.His357Arg	p.H357R	ENST00000276594	NM_024504.3	357	cAt/cGt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	80	546	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	59	738	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508536	106508536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	22	211	0	ENST00000359195.3:c.530G>T	p.Arg177Leu	p.R177L	ENST00000359195	NM_002649.2	177	cGc/cTc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117866581	117866581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	47	567	0	ENST00000297338.2:c.1064C>T	p.Pro355Leu	p.P355L	ENST00000297338	NM_006265.2	355	cCg/cTg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463532	25463532	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	38	464	0	ENST00000264709.3:c.2150A>G	p.Asn717Ser	p.N717S	ENST00000264709	NM_175629.2	717	aAc/aGc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81957189	81957189	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	37	426	1	ENST00000359376.3:c.2407C>A	p.Pro803Thr	p.P803T	ENST00000359376	NM_002661.3	803	Ccc/Acc																																																																															
RARA	5914	MSKCC	GRCh37	17	38508624	38508650	+	inframe_deletion	In_Frame_Del	DEL	CTGGGACAAGTTCAGTGAACTCTCCAC	CTGGGACAAGTTCAGTGAACTCTCCAC	-			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	82	732	0	ENST00000254066.5:c.673_699delTGGGACAAGTTCAGTGAACTCTCCACC	p.Trp225_Thr233del	p.W225_T233del	ENST00000254066	NM_000964.3	224	ctCTGGGACAAGTTCAGTGAACTCTCCACc/ctc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123707	11123707	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	41	596	0	ENST00000344626.4:c.2357C>A	p.Thr786Asn	p.T786N	ENST00000344626	NM_003072.3	786	aCc/aAc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464450	25464450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	25	382	0	ENST00000264709.3:c.2063G>T	p.Arg688Leu	p.R688L	ENST00000264709	NM_175629.2	688	cGc/cTc																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47604161	47604161	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	28	477	1	ENST00000263735.4:c.500A>T	p.Gln167Leu	p.Q167L	ENST00000263735	NM_002354.2	167	cAg/cTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41573264	41573264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	56	808	0	ENST00000263253.7:c.5549C>T	p.Pro1850Leu	p.P1850L	ENST00000263253	NM_001429.3	1850	cCc/cTc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936542	49936542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	33	622	0	ENST00000296474.3:c.1385C>T	p.Ala462Val	p.A462V	ENST00000296474	NM_002447.2	462	gCa/gTa																																																																															
BCL6	604	MSKCC	GRCh37	3	187446989	187446989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	40	537	0	ENST00000232014.4:c.1204C>T	p.Arg402Cys	p.R402C	ENST00000232014	NM_001130845.1	402	Cgc/Tgc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545755	106545758	+	stop_gained	Nonsense_Mutation	ONP	AAAG	AAAG	CAAT			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	68	643	0	ENST00000359195.3:c.3232_3235delAAAGinsCAAT	p.LysGly1078GlnTer	p.KG1078Q*	ENST00000359195	NM_002649.2	1078	AAAGga/CAATga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0018329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	141	643	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0018329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	19	352	2	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1206165503		P-0018331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	306	972	1	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804360	46804360	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	471	413	0	ENST00000290295.7:c.647G>T	p.Gly216Val	p.G216V	ENST00000290295	NM_006361.5	216	gGc/gTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101649	27101649	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	274	803	0	ENST00000324856.7:c.4931G>T	p.Gly1644Val	p.G1644V	ENST00000324856	NM_006015.4	1644	gGc/gTc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937626	32937626	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	102	555	0	ENST00000380152.3:c.8287G>T	p.Asp2763Tyr	p.D2763Y	ENST00000380152		2763	Gat/Tat																																																																															
RB1	5925	MSKCC	GRCh37	13	48941645	48941645	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	138	286	1	ENST00000267163.4:c.955A>T	p.Lys319Ter	p.K319*	ENST00000267163	NM_000321.2	319	Aaa/Taa																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988417	36988417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	115	264	0	ENST00000354822.5:c.236C>T	p.Pro79Leu	p.P79L	ENST00000354822	NM_001079668.2	79	cCa/cTa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222290	2222290	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	263	846	0	ENST00000398665.3:c.3122C>G	p.Ala1041Gly	p.A1041G	ENST00000398665	NM_032482.2	1041	gCc/gGc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211150	36211150	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	609	1007	1	ENST00000222270.7:c.901C>A	p.Leu301Ile	p.L301I	ENST00000222270	NM_014727.1	301	Ctc/Atc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31527010	31527010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	131	555	0	ENST00000344624.3:c.30G>T	p.Met10Ile	p.M10I	ENST00000344624		10	atG/atT																																																																															
BRAF	673	MSKCC	GRCh37	7	140476743	140476743	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	84	393	0	ENST00000288602.6:c.1663G>C	p.Asp555His	p.D555H	ENST00000288602	NM_004333.4	555	Gat/Cat																																																																															
STK40	83931	MSKCC	GRCh37	1	36809500	36809500	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	ACGGGCGA			P-0018331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	188	668	0	ENST00000373129.3:c.965delinsTCGCCCGT	p.Ala322ValfsTer31	p.A322Vfs*31	ENST00000373129	NM_032017.1	322	gCc/gTCGCCCGTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	42	559	1	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740488	58740488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	104	803	1	ENST00000305921.3:c.1393G>A	p.Val465Ile	p.V465I	ENST00000305921	NM_003620.3	465	Gtc/Atc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645091	86645091	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	33	436	0	ENST00000274376.6:c.1163T>G	p.Leu388Arg	p.L388R	ENST00000274376	NM_002890.2	388	cTt/cGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27058033	27058033	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	208	467	0	ENST00000324856.7:c.1741C>T	p.Gln581Ter	p.Q581*	ENST00000324856	NM_006015.4	581	Cag/Tag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117683924	117683924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	22	539	0	ENST00000368508.3:c.3223G>A	p.Glu1075Lys	p.E1075K	ENST00000368508	NM_002944.2	1075	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	230	532	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912482	32912482	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	139	501	0	ENST00000380152.3:c.3990T>A	p.Asn1330Lys	p.N1330K	ENST00000380152		1330	aaT/aaA																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983373	15983373	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200574326		P-0018338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	19	393	0	ENST00000268712.3:c.3406G>A	p.Ala1136Thr	p.A1136T	ENST00000268712	NM_006311.3	1136	Gca/Aca																																																																															
TAP1	6890	MSKCC	GRCh37	6	32813537	32813537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	32	339	0	ENST00000354258.4:c.2246C>T	p.Pro749Leu	p.P749L	ENST00000354258	NM_000593.5	749	cCt/cTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48919330	48919355	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGAAAGGTAAAGTAAACATTTTATTA	GGAAAGGTAAAGTAAACATTTTATTA	-			P-0018338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	61	245	0	ENST00000267163.4:c.497_500+22delAAAGGTAAAGTAAACATTTTATTAGG		p.X166_splice	ENST00000267163	NM_000321.2	166																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3789646	3789646	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	67	947	2	ENST00000262367.5:c.4213G>T	p.Val1405Leu	p.V1405L	ENST00000262367	NM_004380.2	1405	Gtg/Ttg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168785	56168785	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	66	687	1	ENST00000399503.3:c.1639C>T	p.Gln547Ter	p.Q547*	ENST00000399503	NM_005921.1	547	Cag/Tag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177054	56177055	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0018342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	41	384	0	ENST00000399503.3:c.2326_2327delAT	p.Ile776CysfsTer4	p.I776Cfs*4	ENST00000399503	NM_005921.1	775	cAT/c																																																																															
BRAF	673	MSKCC	GRCh37	7	140481417	140481417	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913348		P-0018347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	101	693	0	ENST00000288602.6:c.1391G>T	p.Gly464Val	p.G464V	ENST00000288602	NM_004333.4	464	gGa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0018347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	208	833	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577093	7577093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	157	988	1	ENST00000269305.4:c.845G>C	p.Arg282Pro	p.R282P	ENST00000269305	NM_001126112.2	282	cGg/cCg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279540	123279540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	91	759	0	ENST00000358487.5:c.892G>A	p.Gly298Ser	p.G298S	ENST00000358487	NM_000141.4	298	Ggc/Agc																																																																															
CD79B	974	MSKCC	GRCh37	17	62007641	62007641	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	114	632	1	ENST00000392795.3:c.226A>T	p.Ser76Cys	p.S76C	ENST00000392795	NM_001039933.1	76	Agc/Tgc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170559	11170559	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0018347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	113	674	0	ENST00000344626.4:c.4767del	p.Glu1589AspfsTer7	p.E1589Dfs*7	ENST00000344626	NM_003072.3	1589	gAa/ga																																																																															
PREX2	80243	MSKCC	GRCh37	8	69032461	69032461	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	219	1024	1	ENST00000288368.4:c.3535C>T	p.Gln1179Ter	p.Q1179*	ENST00000288368	NM_024870.2	1179	Cag/Tag																																																																															
STAG2	10735	MSKCC	GRCh37	X	123217311	123217311	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	170	951	3	ENST00000218089.9:c.2965G>T	p.Gly989Trp	p.G989W	ENST00000218089	NM_001042749.1	989	Ggg/Tgg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207034	1207034	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	TTTTT			P-0018347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	124	761	0	ENST00000326873.7:c.122delinsTTTTT	p.Lys41IlefsTer123	p.K41Ifs*123	ENST00000326873	NM_000455.4	41	aAg/aTTTTTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42032354	42032354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	47	863	2	ENST00000219905.7:c.4538G>T	p.Arg1513Leu	p.R1513L	ENST00000219905	NM_001164273.1	1513	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578546	7578547	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	62	1391	0	ENST00000269305.4:c.383dup	p.Ala129CysfsTer20	p.A129Cfs*20	ENST00000269305	NM_001126112.2	128	cct/ccCt																																																																															
NF1	4763	MSKCC	GRCh37	17	29665062	29665062	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	66	695	0	ENST00000358273.4:c.6725del	p.Pro2242HisfsTer23	p.P2242Hfs*23	ENST00000358273	NM_001042492.2	2242	Cca/ca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	44	460	1	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	80	941	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656878	45656878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	58	804	1	ENST00000407780.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000407780	NM_001283052.1	93	cGg/cAg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131973835	131973835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	51	606	0	ENST00000265335.6:c.3538C>T	p.Arg1180Trp	p.R1180W	ENST00000265335		1180	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	33	903	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0018352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	25	418	2	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577579	7577579	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	69	725	0	ENST00000269305.4:c.702C>A	p.Tyr234Ter	p.Y234*	ENST00000269305	NM_001126112.2	234	taC/taA																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	25	400	0	ENST00000257430.4:c.4063del	p.Ser1355LeufsTer60	p.S1355Lfs*60	ENST00000257430	NM_000038.5	1354	Ttt/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	218	918	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0018354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	36	642	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40899079	40899079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	286	691	2	ENST00000373198.4:c.2191G>A	p.Ala731Thr	p.A731T	ENST00000373198	NM_133170.3	731	Gcc/Acc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518250	8518250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	144	377	0	ENST00000356435.5:c.1141G>A	p.Ala381Thr	p.A381T	ENST00000356435		381	Gct/Act																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981773	201981774	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0018354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	881	902	0	ENST00000359651.3:c.485_486dup	p.Ser163AlafsTer92	p.S163Afs*92	ENST00000359651		162	ggc/gGCgc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038932	12038932	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	279	794	0	ENST00000396373.4:c.1225A>G	p.Lys409Glu	p.K409E	ENST00000396373	NM_001987.4	409	Aag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579310	7579310	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0018354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	286	697	0	ENST00000269305.4:c.375+2T>C		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	26	710	5	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0018368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	19	609	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71096126	71096126	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	21	363	0	ENST00000318789.4:c.631C>T	p.Gln211Ter	p.Q211*	ENST00000318789	NM_032682.5	211	Cag/Tag																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346154	152346154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	74	817	0	ENST00000359321.1:c.416G>T	p.Ser139Ile	p.S139I	ENST00000359321	NM_005431.1	139	aGt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579359	7579359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	8	982	0	ENST00000269305.4:c.328C>T	p.Arg110Cys	p.R110C	ENST00000269305	NM_001126112.2	110	Cgt/Tgt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115918	8115919	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	67	686	0	ENST00000346208.3:c.1265dupT	p.Met422IlefsTer85	p.M422Ifs*85	ENST00000346208		422	atg/aTtg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348818	89348818	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	22	1270	2	ENST00000301030.4:c.4132delG	p.Glu1378LysfsTer31	p.E1378Kfs*31	ENST00000301030	NM_001256183.1	1378	Gaa/aa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193121549	193121549	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	342	511	0	ENST00000367435.3:c.947A>T	p.His316Leu	p.H316L	ENST00000367435	NM_024529.4	316	cAt/cTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445716	49445716	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	544	1681	0	ENST00000301067.7:c.1750C>G	p.Pro584Ala	p.P584A	ENST00000301067	NM_003482.3	584	Cca/Gca																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138382783	138382783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	276	775	2	ENST00000289153.2:c.2761C>T	p.His921Tyr	p.H921Y	ENST00000289153	NM_006219.2	921	Cat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	352	777	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	116	407	0	ENST00000397062.3:c.92G>A	p.Gly31Glu	p.G31E	ENST00000397062	NM_006164.4	31	gGa/gAa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134825358	134825358	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	125	508	0	ENST00000398015.3:c.874C>G	p.Arg292Gly	p.R292G	ENST00000398015	NM_004441.4	292	Cgc/Ggc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373700	118373700	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	54	604	0	ENST00000534358.1:c.7093A>G	p.Lys2365Glu	p.K2365E	ENST00000534358	NM_005933.3	2365	Aaa/Gaa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56488222	56488222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	243	576	0	ENST00000267101.3:c.1741G>C	p.Asp581His	p.D581H	ENST00000267101	NM_001982.3	581	Gat/Cat																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56493482	56493482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	256	583	0	ENST00000267101.3:c.2890G>C	p.Glu964Gln	p.E964Q	ENST00000267101	NM_001982.3	964	Gag/Cag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982365	25982365	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	94	261	0	ENST00000435504.4:c.925G>C	p.Glu309Gln	p.E309Q	ENST00000435504		309	Gag/Cag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198273282	198273282	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	74	628	0	ENST00000335508.6:c.928T>C	p.Trp310Arg	p.W310R	ENST00000335508	NM_012433.2	310	Tgg/Cgg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163671	32163671	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	123	378	0	ENST00000375023.3:c.5555delC	p.Pro1852ArgfsTer33	p.P1852Rfs*33	ENST00000375023	NM_004557.3	1852	cCg/cg																																																																															
PIM1	5292	MSKCC	GRCh37	6	37141760	37141760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	70	731	0	ENST00000373509.5:c.835C>A	p.Pro279Thr	p.P279T	ENST00000373509	NM_002648.3	279	Cca/Aca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877127	151877127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	123	393	0	ENST00000262189.6:c.7234C>T	p.Pro2412Ser	p.P2412S	ENST00000262189	NM_170606.2	2412	Ccc/Tcc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410079	63410079	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	134	593	0	ENST00000330258.3:c.3088A>T	p.Met1030Leu	p.M1030L	ENST00000330258	NM_152424.3	1030	Atg/Ttg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACT			P-0018383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	118	607	0	ENST00000275493.2:c.2310_2311insTAC	p.Asp770_Asn771insTyr	p.D770_N771insY	ENST00000275493	NM_005228.3	770	gac/gACTac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923494	9923494	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	39	631	0	ENST00000330684.3:c.1793delC	p.Ser598PhefsTer56	p.S598Ffs*56	ENST00000330684	NM_001134407.1	598	tCt/tt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822058	72822058	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	16	300	0	ENST00000268489.5:c.10117G>C	p.Glu3373Gln	p.E3373Q	ENST00000268489	NM_006885.3	3373	Gag/Cag																																																																															
ACVR1	90	MSKCC	GRCh37	2	158634813	158634813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	33	491	1	ENST00000263640.3:c.373G>A	p.Gly125Ser	p.G125S	ENST00000263640	NM_001105.4	125	Ggc/Agc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67575468	67575468	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	48	471	1	ENST00000274335.5:c.541G>T	p.Val181Phe	p.V181F	ENST00000274335		181	Gtt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	17	739	5	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0018386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	216	894	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259554	55259554	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	206	802	0	ENST00000275493.2:c.2612C>G	p.Ala871Gly	p.A871G	ENST00000275493	NM_005228.3	871	gCa/gGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578234	7578234	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0018386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	99	965	0	ENST00000269305.4:c.615T>G	p.Tyr205Ter	p.Y205*	ENST00000269305	NM_001126112.2	205	taT/taG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0018391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	191	618	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99459340	99459340	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	46	370	0	ENST00000268035.6:c.1976G>C	p.Arg659Pro	p.R659P	ENST00000268035	NM_000875.3	659	cGg/cCg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0018392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	192	377	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0018392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	101	283	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577128	7577128	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	372	466	0	ENST00000269305.4:c.810T>G	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	ttT/ttG																																																																															
NF1	4763	MSKCC	GRCh37	17	29557891	29557892	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	46	80	0	ENST00000358273.4:c.3147dup	p.Met1050TyrfsTer10	p.M1050Yfs*10	ENST00000358273	NM_001042492.2	1049	gtt/gTtt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	249	355	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733044	74733044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	265	334	0	ENST00000359995.5:c.199G>A	p.Asp67Asn	p.D67N	ENST00000359995	NM_001195427.1	67	Gac/Aac																																																																															
JUN	3725	MSKCC	GRCh37	1	59248555	59248555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	139	371	0	ENST00000371222.2:c.188C>T	p.Ser63Leu	p.S63L	ENST00000371222	NM_002228.3	63	tCg/tTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68842745	68842751	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	ATACACT	ATACACT	-			P-0018394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	202	348	0	ENST00000261769.5:c.681_687del	p.Tyr228SerfsTer20	p.Y228Sfs*20	ENST00000261769	NM_004360.3	227	acATACACT/ac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821857	72821857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	234	298	1	ENST00000268489.5:c.10318G>A	p.Glu3440Lys	p.E3440K	ENST00000268489	NM_006885.3	3440	Gaa/Aaa																																																																															
EZH1	2145	MSKCC	GRCh37	17	40872387	40872387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	327	620	0	ENST00000428826.2:c.568G>A	p.Glu190Lys	p.E190K	ENST00000428826		190	Gag/Aag																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910350	29910350	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	105	519	0	ENST00000376809.5:c.20G>C	p.Arg7Pro	p.R7P	ENST00000376809	NM_002116.7	7	cGa/cCa																																																																															
ETV1	2115	MSKCC	GRCh37	7	14027754	14027754	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	219	331	0	ENST00000405192.2:c.90G>C	p.Arg30Ser	p.R30S	ENST00000405192	NM_001163147.1	30	agG/agC																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101151	27101151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	198	558	0	ENST00000324856.7:c.4433C>T	p.Pro1478Leu	p.P1478L	ENST00000324856	NM_006015.4	1478	cCa/cTa																																																																															
IL10	3586	MSKCC	GRCh37	1	206941993	206941993	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	36	220	0	ENST00000423557.1:c.525G>T	p.Lys175Asn	p.K175N	ENST00000423557	NM_000572.2	175	aaG/aaT																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711907	89711908	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	169	473	0	ENST00000371953.3:c.526dup	p.Tyr176LeufsTer4	p.Y176Lfs*4	ENST00000371953	NM_000314.4	175	-/T																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114249	115114250	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	109	414	0	ENST00000257566.3:c.967dup	p.Arg323LysfsTer4	p.R323Kfs*4	ENST00000257566	NM_016569.3	323	agg/aAgg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40474476	40474476	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	36	350	0	ENST00000264657.5:c.1925A>C	p.Lys642Thr	p.K642T	ENST00000264657	NM_139276.2	642	aAg/aCg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39609379	39609379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	168	354	0	ENST00000262039.4:c.1681C>T	p.Arg561Cys	p.R561C	ENST00000262039	NM_002647.2	561	Cgc/Tgc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643296	38643296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	67	409	0	ENST00000299084.4:c.766C>T	p.Arg256Cys	p.R256C	ENST00000299084	NM_152594.2	256	Cgt/Tgt																																																																															
NF1	4763	MSKCC	GRCh37	17	29556908	29556908	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	22	183	0	ENST00000358273.4:c.2906A>G	p.Lys969Arg	p.K969R	ENST00000358273	NM_001042492.2	969	aAg/aGg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243753	41243753	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	73	402	0	ENST00000357654.3:c.3795T>G	p.Asn1265Lys	p.N1265K	ENST00000357654	NM_007294.3	1265	aaT/aaG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	64	427	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0018397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	298	527	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675571	30675571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	50	529	0	ENST00000376406.3:c.2785G>A	p.Asp929Asn	p.D929N	ENST00000376406	NM_014641.2	929	Gat/Aat																																																																															
NF2	4771	MSKCC	GRCh37	22	30054254	30054254	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	78	320	0	ENST00000338641.4:c.675+1G>A		p.X225_splice	ENST00000338641	NM_000268.3	225																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49439738	49439738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	283	429	0	ENST00000301067.7:c.4706C>T	p.Pro1569Leu	p.P1569L	ENST00000301067	NM_003482.3	1569	cCt/cTt																																																																															
BLM	641	MSKCC	GRCh37	15	91328186	91328186	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	175	306	0	ENST00000355112.3:c.2698G>C	p.Glu900Gln	p.E900Q	ENST00000355112	NM_000057.2	900	Gaa/Caa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163216	32163217	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	193	548	0	ENST00000375023.3:c.6009dup	p.Ter2004IlefsTer33	p.*2004Ifs*33	ENST00000375023	NM_004557.3	2003	-/A																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528449	157528449	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	218	381	0	ENST00000346085.5:c.6176del	p.Pro2059ArgfsTer40	p.P2059Rfs*40	ENST00000346085	NM_020732.3	2058	tgC/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0018398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	329	404	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0018398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	96	318	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0018398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	246	339	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
KIT	3815	MSKCC	GRCh37	4	55599332	55599332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	15	305	0	ENST00000288135.5:c.2458G>T	p.Asp820Tyr	p.D820Y	ENST00000288135	NM_000222.2	820	Gat/Tat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023156	27023172	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGGCAGCGGCGGCGG	GCCGGCAGCGGCGGCGG	-			P-0018398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	102	63	0	ENST00000324856.7:c.265_281del	p.Gly89ArgfsTer16	p.G89Rfs*16	ENST00000324856	NM_006015.4	88	GCCGGCAGCGGCGGCGGg/g																																																																															
MGA	23269	MSKCC	GRCh37	15	42041743	42041743	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	117	265	2	ENST00000219905.7:c.5938del	p.Glu1980LysfsTer5	p.E1980Kfs*5	ENST00000219905	NM_001164273.1	1980	Gaa/aa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584593	48584593	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	139	347	0	ENST00000342988.3:c.766del	p.Gln256SerfsTer80	p.Q256Sfs*80	ENST00000342988	NM_005359.5	256	Cag/ag																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67201869	67201869	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	106	395	0	ENST00000312629.5:c.1069C>G	p.Gln357Glu	p.Q357E	ENST00000312629	NM_003952.2	357	Cag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579401	7579401	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	129	468	0	ENST00000269305.4:c.286del	p.Ser96LeufsTer27	p.S96Lfs*27	ENST00000269305	NM_001126112.2	96	Tct/ct																																																																															
MED12	9968	MSKCC	GRCh37	X	70342124	70342131	+	frameshift_variant	Frame_Shift_Del	DEL	ACCACTTG	ACCACTTG	-			P-0018401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	115	427	0	ENST00000374080.3:c.1184_1191del	p.Asp395AlafsTer13	p.D395Afs*13	ENST00000374080		392	tcACCACTTGac/tcac																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0018402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	245	433	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0018402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	219	502	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	359	324	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591148	67591149	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGA			P-0018402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	128	280	0	ENST00000274335.5:c.1744_1745+1dup		p.L582_M583dup	ENST00000274335		582	ttg/tTGAtg																																																																															
APC	324	MSKCC	GRCh37	5	112175108	112175108	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	118	227	0	ENST00000257430.4:c.3817A>T	p.Arg1273Ter	p.R1273*	ENST00000257430	NM_000038.5	1273	Aga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018410-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	154	725	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129867	55129867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018410-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			536	106	604	0	ENST00000257290.5:c.401C>T	p.Thr134Met	p.T134M	ENST00000257290	NM_006206.4	134	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175751	112175752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018410-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			194	124	365	0	ENST00000257430.4:c.4463dup	p.Leu1488PhefsTer26	p.L1488Ffs*26	ENST00000257430	NM_000038.5	1487	act/acTt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174419	11174419	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018410-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			654	199	789	0	ENST00000361445.4:c.7256A>C	p.Glu2419Ala	p.E2419A	ENST00000361445	NM_004958.3	2419	gAa/gCa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458452	120458452	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140832430		P-0018410-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			469	30	465	2	ENST00000256646.2:c.6893G>A	p.Arg2298Gln	p.R2298Q	ENST00000256646	NM_024408.3	2298	cGg/cAg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422077	81422077	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018410-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			419	50	451	0	ENST00000298171.2:c.53A>C	p.Asp18Ala	p.D18A	ENST00000298171	NM_000369.2	18	gAc/gCc																																																																															
EP300	2033	MSKCC	GRCh37	22	41521991	41521991	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018410-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			670	56	638	0	ENST00000263253.7:c.853T>C	p.Ser285Pro	p.S285P	ENST00000263253	NM_001429.3	285	Tct/Cct																																																																															
NSD1	64324	MSKCC	GRCh37	5	176639155	176639155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018410-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			546	227	642	0	ENST00000439151.2:c.3755G>T	p.Gly1252Val	p.G1252V	ENST00000439151	NM_022455.4	1252	gGa/gTa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737573	145737573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018410-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			723	204	702	1	ENST00000428558.2:c.3190C>T	p.Arg1064Cys	p.R1064C	ENST00000428558	NM_004260.3	1064	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	188	531	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0018411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	304	631	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0018411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	206	461	1	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
RAD52	5893	MSKCC	GRCh37	12	1042197	1042197	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	304	650	0	ENST00000358495.3:c.28G>C	p.Gly10Arg	p.G10R	ENST00000358495	NM_134424.2	10	Gga/Cga																																																																															
CDH1	999	MSKCC	GRCh37	16	68853188	68853188	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	207	461	0	ENST00000261769.5:c.1572del	p.Ile525PhefsTer32	p.I525Ffs*32	ENST00000261769	NM_004360.3	524	cGg/cg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47656949	47656949	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	235	509	0	ENST00000233146.2:c.1145G>C	p.Arg382Pro	p.R382P	ENST00000233146	NM_000251.2	382	cGt/cCt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0018412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	85	528	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0018412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	182	584	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0018412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	324	410	1	ENST00000269305.4:c.673-2A>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
POLD1	5424	MSKCC	GRCh37	19	50906446	50906446	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	141	609	0	ENST00000440232.2:c.1107G>T	p.Gln369His	p.Q369H	ENST00000440232	NM_002691.3	369	caG/caT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32182003	32182003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	122	646	0	ENST00000375023.3:c.2051C>T	p.Thr684Met	p.T684M	ENST00000375023	NM_004557.3	684	aCg/aTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	142	428	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0018414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	248	633	2	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																															
EED	8726	MSKCC	GRCh37	11	85979599	85979599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	135	343	0	ENST00000263360.6:c.962C>T	p.Ser321Phe	p.S321F	ENST00000263360	NM_003797.3	321	tCt/tTt																																																																															
CDH1	999	MSKCC	GRCh37	16	68856129	68856129	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0018414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	135	525	0	ENST00000261769.5:c.1936+1G>T		p.X646_splice	ENST00000261769	NM_004360.3	646																																																																																
BCOR	54880	MSKCC	GRCh37	X	39913220	39913221	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0018414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	147	528	2	ENST00000378444.4:c.4894_4895delinsTT	p.Ala1632Phe	p.A1632F	ENST00000378444	NM_001123385.1	1632	GCc/TTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0018434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	271	530	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004451	150004451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	59	322	0	ENST00000253339.5:c.1774G>A	p.Glu592Lys	p.E592K	ENST00000253339		592	Gag/Aag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251860	212251860	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	27	253	0	ENST00000342788.4:c.3199C>T	p.Arg1067Ter	p.R1067*	ENST00000342788	NM_005235.2	1067	Cga/Tga																																																																															
ETV6	2120	MSKCC	GRCh37	12	11992206	11992206	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	286	379	1	ENST00000396373.4:c.296A>T	p.Lys99Ile	p.K99I	ENST00000396373	NM_001987.4	99	aAa/aTa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	54	183	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	20	148	1	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	23	53	1	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	83	280	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	106	229	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742463	17742463	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	75	317	0	ENST00000250003.3:c.650delC	p.Pro217ArgfsTer33	p.P217Rfs*33	ENST00000250003	NM_002478.4	215	ggC/gg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	85	334	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	94	334	1	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913399		P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	38	196	0	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	23	267	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	95	337	0	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																															
AXL	558	MSKCC	GRCh37	19	41744385	41744385	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	74	302	0	ENST00000301178.4:c.1010delC	p.Pro337LeufsTer29	p.P337Lfs*29	ENST00000301178	NM_021913.4	335	ggC/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	85	359	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564530	86564530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	46	207	0	ENST00000274376.6:c.266del	p.Gly89GlufsTer7	p.G89Efs*7	ENST00000274376	NM_002890.2	88	Ggg/gg																																																																															
CIC	23152	MSKCC	GRCh37	19	42795269	42795269	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	82	267	2	ENST00000575354.2:c.2353delG	p.Ala785ProfsTer139	p.A785Pfs*139	ENST00000575354	NM_015125.3	783	caG/ca																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645893	67645893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	86	313	1	ENST00000264010.4:c.821C>T	p.Thr274Met	p.T274M	ENST00000264010	NM_006565.3	274	aCg/aTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165283	47165283	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	41	222	0	ENST00000409792.3:c.843delA	p.Glu282LysfsTer19	p.E282Kfs*19	ENST00000409792	NM_014159.6	281	aaA/aa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737579	145737579	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199658221		P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	86	386	2	ENST00000428558.2:c.3184C>T	p.Arg1062Trp	p.R1062W	ENST00000428558	NM_004260.3	1062	Cgg/Tgg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67646013	67646014	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	57	330	0	ENST00000264010.4:c.950_951delCA	p.Thr317ArgfsTer91	p.T317Rfs*91	ENST00000264010	NM_006565.3	314	aAC/a																																																																															
FLCN	201163	MSKCC	GRCh37	17	17125941	17125941	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367843558		P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	81	343	0	ENST00000285071.4:c.653G>A	p.Arg218His	p.R218H	ENST00000285071	NM_144997.5	218	cGt/cAt																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	91	361	0	ENST00000262741.5:c.883delA	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																															
FYN	2534	MSKCC	GRCh37	6	112020818	112020819	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	50	270	0	ENST00000368678.4:c.752dupC	p.Gln252ThrfsTer7	p.Q252Tfs*7	ENST00000368678		251	cca/ccCa																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46546324	46546324	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	48	223	0	ENST00000262741.5:c.205del	p.Asp69IlefsTer7	p.D69Ifs*7	ENST00000262741	NM_003629.3	69	Gat/at																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256321	16256321	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	58	391	0	ENST00000375759.3:c.3591del	p.Asp1198MetfsTer2	p.D1198Mfs*2	ENST00000375759	NM_015001.2	1196	Aaa/aa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11270924	11270924	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	69	292	2	ENST00000361445.4:c.3601C>T	p.Arg1201Ter	p.R1201*	ENST00000361445	NM_004958.3	1201	Cga/Tga																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228997	36228997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	99	313	1	ENST00000222270.7:c.7777C>T	p.Arg2593Cys	p.R2593C	ENST00000222270	NM_014727.1	2593	Cgc/Tgc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120506416	120506416	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	80	291	0	ENST00000256646.2:c.1696T>A	p.Leu566Met	p.L566M	ENST00000256646	NM_024408.3	566	Ttg/Atg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746113	162746113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	86	172	0	ENST00000367921.3:c.2236C>T	p.Arg746Trp	p.R746W	ENST00000367921	NM_006182.2	746	Cgg/Tgg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572519	64572519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	94	341	2	ENST00000337652.1:c.1352G>A	p.Arg451His	p.R451H	ENST00000337652	NM_130803.2	451	cGt/cAt																																																																															
ATM	472	MSKCC	GRCh37	11	108126987	108126987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	78	336	0	ENST00000278616.4:c.2170G>T	p.Gly724Cys	p.G724C	ENST00000278616	NM_000051.3	724	Ggt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108151890	108151890	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	36	189	0	ENST00000278616.4:c.3575del	p.Lys1192ArgfsTer3	p.K1192Rfs*3	ENST00000278616	NM_000051.3	1191	Aaa/aa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344954	118344955	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	43	205	0	ENST00000534358.1:c.3086dup	p.Ala1030GlyfsTer9	p.A1030Gfs*9	ENST00000534358	NM_005933.3	1027	cta/ctAa																																																																															
CBL	867	MSKCC	GRCh37	11	119169151	119169151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	45	297	0	ENST00000264033.4:c.2335C>T	p.Pro779Ser	p.P779S	ENST00000264033	NM_005188.3	779	Cca/Tca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435048	49435048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	50	247	0	ENST00000301067.7:c.6505G>A	p.Ala2169Thr	p.A2169T	ENST00000301067	NM_003482.3	2169	Gcc/Acc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906576	32906576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	68	277	1	ENST00000380152.3:c.961C>A	p.Gln321Lys	p.Q321K	ENST00000380152		321	Caa/Aaa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914509	32914509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	37	345	0	ENST00000380152.3:c.6017G>A	p.Ser2006Asn	p.S2006N	ENST00000380152		2006	aGt/aAt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679181	88679182	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	91	312	0	ENST00000360948.2:c.855dup	p.Ala286CysfsTer29	p.A286Cfs*29	ENST00000360948	NM_001012338.2	285	-/T																																																																															
CDH1	999	MSKCC	GRCh37	16	68835765	68835766	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	111	324	0	ENST00000261769.5:c.360dup	p.His121AlafsTer47	p.H121Afs*47	ENST00000261769	NM_004360.3	119	gtg/gtGg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805059	89805059	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	66	317	0	ENST00000389301.3:c.4318C>T	p.Gln1440Ter	p.Q1440*	ENST00000389301	NM_000135.2	1440	Cag/Tag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10249172	10249172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	84	400	1	ENST00000340748.4:c.4010G>T	p.Arg1337Leu	p.R1337L	ENST00000340748		1337	cGg/cTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290288	15290288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	89	403	0	ENST00000263388.2:c.3347G>A	p.Gly1116Asp	p.G1116D	ENST00000263388	NM_000435.2	1116	gGt/gAt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279956	18279956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	123	403	0	ENST00000222254.8:c.2039C>T	p.Ala680Val	p.A680V	ENST00000222254	NM_005027.3	680	gCg/gTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50916690	50916690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	88	315	0	ENST00000440232.2:c.2162C>T	p.Thr721Met	p.T721M	ENST00000440232	NM_002691.3	721	aCg/aTg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46583861	46583861	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	74	315	0	ENST00000263734.3:c.370-2A>G		p.X124_splice	ENST00000263734	NM_001430.4	124																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212587225	212587225	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	77	249	0	ENST00000342788.4:c.776T>C	p.Val259Ala	p.V259A	ENST00000342788	NM_005235.2	259	gTt/gCt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662623	227662623	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	66	256	0	ENST00000305123.5:c.832A>G	p.Asn278Asp	p.N278D	ENST00000305123	NM_005544.2	278	Aac/Gac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306715	41306715	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	60	304	0	ENST00000373198.4:c.944T>C	p.Ile315Thr	p.I315T	ENST00000373198	NM_133170.3	315	aTc/aCc																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458344	12458344	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	93	352	0	ENST00000287820.6:c.961del	p.Val321CysfsTer15	p.V321Cfs*15	ENST00000287820	NM_015869.4	321	Gtg/tg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436387	52436387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	81	298	0	ENST00000460680.1:c.2107G>T	p.Gly703Trp	p.G703W	ENST00000460680	NM_004656.3	703	Ggg/Tgg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528554	89528554	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	45	154	0	ENST00000336596.2:c.2858del	p.Lys953ArgfsTer20	p.K953Rfs*20	ENST00000336596	NM_005233.5	952	Aaa/aa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1978338	1978338	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	93	322	0	ENST00000382891.5:c.3758T>G	p.Leu1253Arg	p.L1253R	ENST00000382891	NM_133335.3	1253	cTg/cGg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753127	57753127	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	40	201	0	ENST00000274289.3:c.889T>C	p.Tyr297His	p.Y297H	ENST00000274289	NM_006622.3	297	Tat/Cat																																																																															
MSH3	4437	MSKCC	GRCh37	5	80064780	80064780	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	52	325	0	ENST00000265081.6:c.2216del	p.Asn739IlefsTer7	p.N739Ifs*7	ENST00000265081	NM_002439.4	737	ctA/ct																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839873	27839874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	40	262	0	ENST00000328488.2:c.220dup	p.Glu74GlyfsTer7	p.E74Gfs*7	ENST00000328488	NM_003533.2	74	gag/gGag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671194	30671194	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	77	335	0	ENST00000376406.3:c.5682+1del		p.X1894_splice	ENST00000376406	NM_014641.2	1894																																																																																
HLA-B	3106	MSKCC	GRCh37	6	31323352	31323352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	62	236	0	ENST00000412585.2:c.637G>A	p.Val213Met	p.V213M	ENST00000412585	NM_005514.6	213	Gtg/Atg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552930	106552930	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	69	394	0	ENST00000369096.4:c.895T>C	p.Tyr299His	p.Y299H	ENST00000369096	NM_001198.3	299	Tac/Cac																																																																															
HGF	3082	MSKCC	GRCh37	7	81388044	81388045	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	47	346	0	ENST00000222390.5:c.330dup	p.Glu111ArgfsTer5	p.E111Rfs*5	ENST00000222390	NM_000601.4	110	-/A																																																																															
TEK	7010	MSKCC	GRCh37	9	27185545	27185545	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	98	434	0	ENST00000380036.4:c.1250delC	p.Pro417LeufsTer10	p.P417Lfs*10	ENST00000380036	NM_000459.3	415	ctC/ct																																																																															
STAG2	10735	MSKCC	GRCh37	X	123202471	123202471	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	56	149	0	ENST00000218089.9:c.2323T>C	p.Tyr775His	p.Y775H	ENST00000218089	NM_001042749.1	775	Tac/Cac																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	134	308	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	118	401	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	202	289	0	ENST00000269305.4:c.725G>C	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	tGc/tCc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120226	70120226	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	262	518	1	ENST00000245479.2:c.1228C>T	p.Gln410Ter	p.Q410*	ENST00000245479	NM_000346.3	410	Cag/Tag																																																																															
FLT3	2322	MSKCC	GRCh37	13	28602329	28602329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	60	302	2	ENST00000241453.7:c.2039C>T	p.Ala680Val	p.A680V	ENST00000241453	NM_004119.2	680	gCg/gTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	317	491	5	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
SYK	6850	MSKCC	GRCh37	9	93606334	93606334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	215	369	1	ENST00000375746.1:c.154G>A	p.Ala52Thr	p.A52T	ENST00000375746	NM_001174167.1	52	Gcc/Acc																																																																															
PGR	5241	MSKCC	GRCh37	11	100999304	100999304	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	246	449	0	ENST00000325455.5:c.498C>G	p.Ser166Arg	p.S166R	ENST00000325455	NM_001202474.3	166	agC/agG																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482828	67482828	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	389	336	0	ENST00000327367.4:c.1232T>A	p.Leu411His	p.L411H	ENST00000327367	NM_005902.3	411	cTc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830778	72830778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	174	332	2	ENST00000268489.5:c.5803C>T	p.Arg1935Cys	p.R1935C	ENST00000268489	NM_006885.3	1935	Cgc/Tgc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923762	72923762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	177	325	0	ENST00000268489.5:c.3316C>T	p.His1106Tyr	p.H1106Y	ENST00000268489	NM_006885.3	1106	Cat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112170679	112170679	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	190	226	0	ENST00000257430.4:c.1775T>G	p.Leu592Ter	p.L592*	ENST00000257430	NM_000038.5	592	tTa/tGa																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519466	137519466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	104	195	0	ENST00000367739.4:c.1172G>A	p.Ser391Asn	p.S391N	ENST00000367739	NM_000416.2	391	aGc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0018446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	160	386	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30099969	30099969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	59	322	0	ENST00000331968.5:c.1651G>A	p.Gly551Ser	p.G551S	ENST00000331968	NM_002742.2	551	Ggt/Agt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632648	3632648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	165	490	0	ENST00000294008.3:c.5200G>A	p.Glu1734Lys	p.E1734K	ENST00000294008	NM_032444.2	1734	Gag/Aag																																																																															
EP300	2033	MSKCC	GRCh37	22	41573157	41573161	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGC	GCAGC	-			P-0018446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	70	374	1	ENST00000263253.7:c.5442_5446del	p.Gln1815ThrfsTer66	p.Q1815Tfs*66	ENST00000263253	NM_001429.3	1814	cgGCAGCaa/cgaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55211008	55211008	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	194	306	1	ENST00000275493.2:c.251A>T	p.Glu84Val	p.E84V	ENST00000275493	NM_005228.3	84	gAg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579559	7579559	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	122	523	0	ENST00000269305.4:c.128delT	p.Leu43Ter	p.L43*	ENST00000269305	NM_001126112.2	43	tTg/tg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9776636	9776643	+	frameshift_variant	Frame_Shift_Del	DEL	CATGAGTA	CATGAGTA	-			P-0018447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	41	517	0	ENST00000377346.4:c.740_747delATGAGTAC	p.His247ProfsTer39	p.H247Pfs*39	ENST00000377346	NM_005026.3	247	CATGAGTAc/c																																																																															
ATR	545	MSKCC	GRCh37	3	142281226	142281226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	93	472	1	ENST00000350721.4:c.1018G>A	p.Asp340Asn	p.D340N	ENST00000350721	NM_001184.3	340	Gat/Aat																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983031	149983031	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	86	561	0	ENST00000253339.5:c.3227A>G	p.Tyr1076Cys	p.Y1076C	ENST00000253339		1076	tAt/tGt																																																																															
ALK	238	MSKCC	GRCh37	2	30142985	30143000	+	protein_altering_variant	In_Frame_Del	DEL	CTTGGCGAATCCACCA	CTTGGCGAATCCACCA	G			P-0018447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	58	756	0	ENST00000389048.3:c.526_541delTGGTGGATTCGCCAAGinsC	p.Trp176_Gly181delinsArg	p.W176_G181delinsR	ENST00000389048	NM_004304.4	176	TGGTGGATTCGCCAAGgc/Cgc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274772	123274772	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	253	586	1	ENST00000358487.5:c.1146C>A	p.Cys382Ter	p.C382*	ENST00000358487	NM_000141.4	382	tgC/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	860	677	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133245229	133245229	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	579	627	1	ENST00000320574.5:c.2018G>T	p.Gly673Val	p.G673V	ENST00000320574	NM_006231.2	673	gGc/gTc																																																																															
MGA	23269	MSKCC	GRCh37	15	42052629	42052629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	254	512	2	ENST00000219905.7:c.7300C>T	p.Arg2434Trp	p.R2434W	ENST00000219905	NM_001164273.1	2434	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	333	744	1	ENST00000269305.4:c.379T>A	p.Ser127Thr	p.S127T	ENST00000269305	NM_001126112.2	127	Tcc/Acc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604773	48604773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	453	476	0	ENST00000342988.3:c.1595C>A	p.Ala532Asp	p.A532D	ENST00000342988	NM_005359.5	532	gCc/gAc																																																																															
CASP8	841	MSKCC	GRCh37	2	202131415	202131415	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	360	562	0	ENST00000358485.4:c.383T>G	p.Ile128Ser	p.I128S	ENST00000358485	NM_001080125.1	128	aTt/aGt																																																																															
BARD1	580	MSKCC	GRCh37	2	215646177	215646177	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	251	540	0	ENST00000260947.4:c.421A>G	p.Asn141Asp	p.N141D	ENST00000260947	NM_000465.2	141	Aat/Gat																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264292	46264292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	160	392	0	ENST00000371998.3:c.1339G>A	p.Gly447Ser	p.G447S	ENST00000371998		447	Ggc/Agc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436674	52436674	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	221	595	0	ENST00000460680.1:c.2000G>C	p.Arg667Thr	p.R667T	ENST00000460680	NM_004656.3	667	aGg/aCg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437647	52437647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	239	489	0	ENST00000460680.1:c.1514C>T	p.Ser505Leu	p.S505L	ENST00000460680	NM_004656.3	505	tCg/tTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873105	134873105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	232	551	0	ENST00000398015.3:c.1409G>A	p.Arg470Gln	p.R470Q	ENST00000398015	NM_004441.4	470	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112176008	112176008	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	183	452	0	ENST00000257430.4:c.4717G>T	p.Glu1573Ter	p.E1573*	ENST00000257430	NM_000038.5	1573	Gaa/Taa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131923614	131923614	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	156	386	0	ENST00000265335.6:c.886-2A>T		p.X296_splice	ENST00000265335		296																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53225129	53225129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	199	591	5	ENST00000375401.3:c.3089G>A	p.Arg1030Gln	p.R1030Q	ENST00000375401	NM_004187.3	1030	cGg/cAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412209	63412210	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	934	810	0	ENST00000330258.3:c.956_957dupTG	p.Lys320Ter	p.K320*	ENST00000330258	NM_152424.3	319	-/TG																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861870	57861870	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	158	577	0	ENST00000228682.2:c.1171G>C	p.Ala391Pro	p.A391P	ENST00000228682	NM_005269.2	391	Gcc/Ccc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514905	103514905	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	65	370	0	ENST00000355739.4:c.1406A>G	p.Asp469Gly	p.D469G	ENST00000355739	NM_000123.3	469	gAc/gGc																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2089939	2089939	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	73	402	0	ENST00000219066.1:c.925G>T	p.Ala309Ser	p.A309S	ENST00000219066	NM_002528.5	309	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577539	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	236	582	0	ENST00000269305.4:c.742_743delCGinsTT	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	CGg/TTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10248598	10248598	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	88	579	1	ENST00000340748.4:c.4155G>T	p.Glu1385Asp	p.E1385D	ENST00000340748		1385	gaG/gaT																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266934	18266934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	62	464	1	ENST00000222254.8:c.245C>T	p.Ala82Val	p.A82V	ENST00000222254	NM_005027.3	82	gCc/gTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40747127	40747127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	267	494	1	ENST00000373198.4:c.2955G>T	p.Glu985Asp	p.E985D	ENST00000373198	NM_133170.3	985	gaG/gaT																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670648	134670648	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	367	624	0	ENST00000398015.3:c.559C>G	p.Leu187Val	p.L187V	ENST00000398015	NM_004441.4	187	Ctt/Gtt																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169981211	169981211	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	79	566	0	ENST00000295797.4:c.358G>C	p.Glu120Gln	p.E120Q	ENST00000295797	NM_002740.5	120	Gaa/Caa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	309	425	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250464	26250464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	62	517	0	ENST00000446824.2:c.370G>A	p.Asp124Asn	p.D124N	ENST00000446824	NM_021018.2	124	Gac/Aac																																																																															
ROS1	6098	MSKCC	GRCh37	6	117687241	117687241	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	48	308	0	ENST00000368508.3:c.2810C>T	p.Pro937Leu	p.P937L	ENST00000368508	NM_002944.2	937	cCa/cTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55227991	55227991	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	419	504	0	ENST00000275493.2:c.1458G>C	p.Gln486His	p.Q486H	ENST00000275493	NM_005228.3	486	caG/caC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151896363	151896363	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	152	362	0	ENST00000262189.6:c.4273+1G>T		p.X1425_splice	ENST00000262189	NM_170606.2	1425																																																																																
MED12	9968	MSKCC	GRCh37	X	70343538	70343538	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	61	660	2	ENST00000374080.3:c.1712T>A	p.Leu571Gln	p.L571Q	ENST00000374080		571	cTg/cAg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123191804	123191804	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	46	446	0	ENST00000218089.9:c.1393G>T	p.Val465Phe	p.V465F	ENST00000218089	NM_001042749.1	465	Gtt/Ttt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0018460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	42	554	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640924	3640924	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	170	735	0	ENST00000294008.3:c.2715G>C	p.Glu905Asp	p.E905D	ENST00000294008	NM_032444.2	905	gaG/gaC																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271877	18271877	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	80	575	0	ENST00000222254.8:c.480C>G	p.Ser160Arg	p.S160R	ENST00000222254	NM_005027.3	160	agC/agG																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174441	11174441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	97	698	1	ENST00000361445.4:c.7234G>A	p.Asp2412Asn	p.D2412N	ENST00000361445	NM_004958.3	2412	Gac/Aac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692836	89692836	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	87	206	0	ENST00000371953.3:c.320A>T	p.Asp107Val	p.D107V	ENST00000371953	NM_000314.4	107	gAt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	496	670	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444938	49444938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	82	464	1	ENST00000301067.7:c.2528C>T	p.Ser843Phe	p.S843F	ENST00000301067	NM_003482.3	843	tCc/tTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445318	49445318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	91	788	0	ENST00000301067.7:c.2148G>T	p.Met716Ile	p.M716I	ENST00000301067	NM_003482.3	716	atG/atT																																																																															
INSR	3643	MSKCC	GRCh37	19	7122934	7122934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	76	692	3	ENST00000302850.5:c.3325G>A	p.Gly1109Arg	p.G1109R	ENST00000302850	NM_000208.2	1109	Gga/Aga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213784	66213784	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	61	667	0	ENST00000273854.3:c.2646G>C	p.Met882Ile	p.M882I	ENST00000273854	NM_004439.5	882	atG/atC																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467388	66467388	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	20	256	0	ENST00000273854.3:c.881G>T	p.Gly294Val	p.G294V	ENST00000273854	NM_004439.5	294	gGa/gTa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509282	106509282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	108	529	0	ENST00000359195.3:c.1276G>T	p.Gly426Trp	p.G426W	ENST00000359195	NM_002649.2	426	Ggg/Tgg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139563068	139563068	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	65	728	0	ENST00000308874.7:c.140G>T	p.Arg47Leu	p.R47L	ENST00000308874		47	cGt/cTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041648	47041648	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	83	338	0	ENST00000329236.7:c.1639G>T	p.Gly547Ter	p.G547*	ENST00000329236	NM_001204466.1	547	Gga/Tga																																																																															
ATRX	546	MSKCC	GRCh37	X	76829818	76829818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	146	332	0	ENST00000373344.5:c.6223G>T	p.Gly2075Trp	p.G2075W	ENST00000373344	NM_000489.3	2075	Ggg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	47	568	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226859	2226879	+	inframe_deletion	In_Frame_Del	DEL	GCGGCGTCCTCCGCAGGCGGC	GCGGCGTCCTCCGCAGGCGGC	-			P-0018463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	27	331	0	ENST00000398665.3:c.4353_4373del	p.Gly1452_Ala1458del	p.G1452_A1458del	ENST00000398665	NM_032482.2	1447	GCGGCGTCCTCCGCAGGCGGC/-																																																																															
MSH6	2956	MSKCC	GRCh37	2	48023149	48023149	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	44	458	1	ENST00000234420.5:c.574G>T	p.Glu192Ter	p.E192*	ENST00000234420	NM_000179.2	192	Gaa/Taa																																																																															
KDR	3791	MSKCC	GRCh37	4	55948200	55948200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	28	507	0	ENST00000263923.4:c.3771G>T	p.Gln1257His	p.Q1257H	ENST00000263923	NM_002253.2	1257	caG/caT																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873597	35873597	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	35	269	0	ENST00000303115.3:c.553A>T	p.Ser185Cys	p.S185C	ENST00000303115	NM_002185.3	185	Agc/Tgc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589275	67589275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	24	467	0	ENST00000274335.5:c.1263T>A	p.Asp421Glu	p.D421E	ENST00000274335		421	gaT/gaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0018468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	203	508	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0018468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	303	562	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0018468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	225	293	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691801	30691801	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	233	558	0	ENST00000359013.4:c.378C>A	p.Cys126Ter	p.C126*	ENST00000359013	NM_001024847.2	126	tgC/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	20	554	1	ENST00000269305.4:c.476C>A	p.Ala159Asp	p.A159D	ENST00000269305	NM_001126112.2	159	gCc/gAc																																																																															
YAP1	10413	MSKCC	GRCh37	11	102056845	102056845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	41	614	0	ENST00000282441.5:c.785G>A	p.Arg262Lys	p.R262K	ENST00000282441	NM_001130145.2	262	aGg/aAg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022642	12022642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	125	477	0	ENST00000396373.4:c.748G>A	p.Glu250Lys	p.E250K	ENST00000396373	NM_001987.4	250	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	113	495	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
AKT2	208	MSKCC	GRCh37	19	40741861	40741861	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745550650		P-0018471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	91	471	2	ENST00000392038.2:c.1111C>T	p.Arg371Cys	p.R371C	ENST00000392038	NM_001626.4	371	Cgc/Tgc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62305351	62305351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	58	626	1	ENST00000508582.2:c.896G>T	p.Gly299Val	p.G299V	ENST00000508582		299	gGa/gTa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259335	89259335	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750779844		P-0018471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	78	438	0	ENST00000336596.2:c.479G>A	p.Arg160His	p.R160H	ENST00000336596	NM_005233.5	160	cGt/cAt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448472	89448472	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	20	343	0	ENST00000336596.2:c.1436A>G	p.Glu479Gly	p.E479G	ENST00000336596	NM_005233.5	479	gAa/gGa																																																																															
APC	324	MSKCC	GRCh37	5	112179229	112179229	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	64	420	2	ENST00000257430.4:c.7938A>T	p.Gln2646His	p.Q2646H	ENST00000257430	NM_000038.5	2646	caA/caT																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0018471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	77	606	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139404404	139404404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	55	554	0	ENST00000277541.6:c.2750A>G	p.His917Arg	p.H917R	ENST00000277541	NM_017617.3	917	cAc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0018485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	648	710	3	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
JUN	3725	MSKCC	GRCh37	1	59248499	59248499	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	615	408	4	ENST00000371222.2:c.244C>T	p.Gln82Ter	p.Q82*	ENST00000371222	NM_002228.3	82	Cag/Tag																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551690	150551690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	141	267	4	ENST00000369026.2:c.317C>T	p.Ala106Val	p.A106V	ENST00000369026	NM_021960.4	106	gCg/gTg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981176	201981176	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	376	647	2	ENST00000359651.3:c.255C>A	p.Tyr85Ter	p.Y85*	ENST00000359651		85	taC/taA																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982334	201982343	+	frameshift_variant	Frame_Shift_Del	DEL	GGGATCCCAA	GGGATCCCAA	ACT			P-0018485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	518	691	5	ENST00000359651.3:c.713_722delinsACT	p.Gly238AspfsTer14	p.G238Dfs*14	ENST00000359651		238	gGGGATCCCAAg/gACTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858492	9858492	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148669437		P-0018485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	161	401	0	ENST00000330684.3:c.2909G>A	p.Arg970Gln	p.R970Q	ENST00000330684	NM_001134407.1	970	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112173848	112173848	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	171	345	3	ENST00000257430.4:c.2557G>T	p.Glu853Ter	p.E853*	ENST00000257430	NM_000038.5	853	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175178	112175179	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	106	225	0	ENST00000257430.4:c.3888dup	p.Asp1297ArgfsTer4	p.D1297Rfs*4	ENST00000257430	NM_000038.5	1296	gca/gcAa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553770	106553770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	54	424	1	ENST00000369096.4:c.1735G>A	p.Val579Ile	p.V579I	ENST00000369096	NM_001198.3	579	Gtt/Att																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	251	543	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0018488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	420	780	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	164	226	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857680	9857680	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1303700994		P-0018488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	48	259	1	ENST00000330684.3:c.3721C>T	p.Arg1241Trp	p.R1241W	ENST00000330684	NM_001134407.1	1241	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593395	48593395	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	16	198	0	ENST00000342988.3:c.1146C>G	p.His382Gln	p.H382Q	ENST00000342988	NM_005359.5	382	caC/caG																																																																															
CALR	811	MSKCC	GRCh37	19	13054423	13054423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	141	578	1	ENST00000316448.5:c.1033G>A	p.Glu345Lys	p.E345K	ENST00000316448	NM_004343.3	345	Gag/Aag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024380	31024380	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201302084		P-0018488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	263	504	3	ENST00000375687.4:c.3865C>T	p.Arg1289Trp	p.R1289W	ENST00000375687	NM_015338.5	1289	Cgg/Tgg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127414	55127414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	51	597	0	ENST00000257290.5:c.202G>A	p.Asp68Asn	p.D68N	ENST00000257290	NM_006206.4	68	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1131691025		P-0018495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	95	475	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793008	33793010	+	inframe_deletion	In_Frame_Del	DEL	CGC	CGC	-			P-0018495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	10	78	0	ENST00000498907.2:c.311_313del	p.Gly104del	p.G104del	ENST00000498907	NM_004364.3	104	gGCGac/gac																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562298	21562298	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	62	519	0	ENST00000382592.4:c.1621G>T	p.Glu541Ter	p.E541*	ENST00000382592	NM_014572.2	541	Gag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11113810	11113810	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	74	459	0	ENST00000344626.4:c.1918G>C	p.Glu640Gln	p.E640Q	ENST00000344626	NM_003072.3	640	Gag/Cag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40899094	40899094	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0018495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	41	354	0	ENST00000373198.4:c.2177-1G>T		p.X726_splice	ENST00000373198	NM_133170.3	726																																																																																
WHSC1L1	54904	MSKCC	GRCh37	8	38153399	38153399	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1358	225	500	0	ENST00000317025.8:c.2830G>C	p.Glu944Gln	p.E944Q	ENST00000317025	NM_023034.1	944	Gaa/Caa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38153464	38153464	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	214	411	0	ENST00000317025.8:c.2765G>C	p.Arg922Thr	p.R922T	ENST00000317025	NM_023034.1	922	aGa/aCa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44945109	44945109	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0018495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	14	104	0	ENST00000377967.4:c.3434-1G>A		p.X1145_splice	ENST00000377967	NM_021140.2	1145																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	86	511	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0018509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	113	503	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	464	433	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	529	359	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519922		P-0018511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	242	428	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400777	72400777	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	57	181	0	ENST00000357731.5:c.394C>A	p.His132Asn	p.H132N	ENST00000357731	NM_173808.2	132	Cat/Aat																																																																															
RB1	5925	MSKCC	GRCh37	13	49050852	49050852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1231557654		P-0018511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	131	282	0	ENST00000267163.4:c.2536C>T	p.Gln846Ter	p.Q846*	ENST00000267163	NM_000321.2	846	Cag/Tag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535418	66535418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	329	426	0	ENST00000273854.3:c.43C>T	p.Pro15Ser	p.P15S	ENST00000273854	NM_004439.5	15	Cca/Tca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510282	187510282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	296	302	0	ENST00000441802.2:c.13231C>T	p.Pro4411Ser	p.P4411S	ENST00000441802	NM_005245.3	4411	Ccc/Tcc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56170884	56170884	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	74	148	2	ENST00000399503.3:c.1712G>T	p.Cys571Phe	p.C571F	ENST00000399503	NM_005921.1	571	tGc/tTc																																																																															
MET	4233	MSKCC	GRCh37	7	116423407	116423407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913671		P-0018511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	88	223	0	ENST00000397752.3:c.3682G>C	p.Asp1228His	p.D1228H	ENST00000397752	NM_000245.2	1228	Gac/Cac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974693	21974693	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	489	313	0	ENST00000304494.5:c.134delG	p.Gly45ValfsTer8	p.G45Vfs*8	ENST00000304494	NM_000077.4	45	gGt/gt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661545	227661545	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	91	413	0	ENST00000305123.5:c.1910C>A	p.Pro637His	p.P637H	ENST00000305123	NM_005544.2	637	cCc/cAc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164438	36164438	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	62	122	0	ENST00000300305.3:c.1437del	p.Tyr480ThrfsTer114	p.Y480Tfs*114	ENST00000300305		479	ccC/cc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52598087	52598087	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs111483865		P-0018513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	48	424	0	ENST00000394830.3:c.3779A>G	p.Asp1260Gly	p.D1260G	ENST00000394830	NM_018313.4	1260	gAt/gGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	140	515	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	113	269	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0018514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	107	480	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982096	93982096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	73	387	0	ENST00000369303.4:c.1369C>T	p.Arg457Trp	p.R457W	ENST00000369303	NM_004440.3	457	Cgg/Tgg																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88676897	88676897	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	224	530	0	ENST00000372037.3:c.682C>T	p.Arg228Ter	p.R228*	ENST00000372037	NM_004329.2	228	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	213	437	0	ENST00000269305.4:c.775del	p.Asp259ThrfsTer86	p.D259Tfs*86	ENST00000269305	NM_001126112.2	259	Gac/ac																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098948	47098948	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	73	459	2	ENST00000409792.3:c.6326G>T	p.Arg2109Leu	p.R2109L	ENST00000409792	NM_014159.6	2109	cGa/cTa																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117695719	117695720	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	218	393	0	ENST00000369458.3:c.717dup	p.Val240SerfsTer72	p.V240Sfs*72	ENST00000369458	NM_024626.3	239	-/A																																																																															
AKT3	10000	MSKCC	GRCh37	1	243675707	243675707	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	55	200	0	ENST00000263826.5:c.1273C>T	p.Gln425Ter	p.Q425*	ENST00000263826	NM_005465.4	425	Caa/Taa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948663	71948663	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	110	525	0	ENST00000298229.2:c.3375G>C	p.Gln1125His	p.Q1125H	ENST00000298229	NM_001567.3	1125	caG/caC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	220	446	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856313	111856313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	28	67	0	ENST00000341259.2:c.364G>A	p.Glu122Lys	p.E122K	ENST00000341259	NM_005475.2	122	Gag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061517	38061517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	51	246	0	ENST00000250448.2:c.472G>A	p.Asp158Asn	p.D158N	ENST00000250448	NM_004496.3	158	Gac/Aac																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43720264	43720264	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	145	467	0	ENST00000382044.4:c.3778A>G	p.Thr1260Ala	p.T1260A	ENST00000382044	NM_001141980.1	1260	Aca/Gca																																																																															
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	154	211	0	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	343	644	1	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100942	41100942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	108	416	0	ENST00000373198.4:c.1414G>A	p.Glu472Lys	p.E472K	ENST00000373198	NM_133170.3	472	Gag/Aag																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70971009	70971009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	150	655	3	ENST00000276594.2:c.1252C>T	p.His418Tyr	p.H418Y	ENST00000276594	NM_024504.3	418	Cac/Tac																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	126	431	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123182858	123182858	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	98	280	0	ENST00000218089.9:c.823C>T	p.Gln275Ter	p.Q275*	ENST00000218089	NM_001042749.1	275	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	164	473	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221243	1221243	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	208	635	1	ENST00000326873.7:c.766G>T	p.Glu256Ter	p.E256*	ENST00000326873	NM_000455.4	256	Gaa/Taa																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518614	69518614	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	174	642	0	ENST00000294312.3:c.31T>C	p.Trp11Arg	p.W11R	ENST00000294312	NM_005117.2	11	Tgg/Cgg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21636427	21636427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	145	507	0	ENST00000421138.2:c.583G>A	p.Ala195Thr	p.A195T	ENST00000421138		195	Gca/Aca																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11100121	11100121	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0018517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	127	386	0	ENST00000344626.4:c.1245+2T>C		p.X415_splice	ENST00000344626	NM_003072.3	415																																																																																
SETD2	29072	MSKCC	GRCh37	3	47162770	47162771	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTCA			P-0018517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	107	330	0	ENST00000409792.3:c.3351_3355dup	p.Ser1119MetfsTer4	p.S1119Mfs*4	ENST00000409792	NM_014159.6	1119	agt/aTGAAAgt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557984	187557987	+	frameshift_variant	Frame_Shift_Del	DEL	GTTT	GTTT	-			P-0018517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	32	210	0	ENST00000441802.2:c.3724_3727del	p.Lys1242LeufsTer33	p.K1242Lfs*33	ENST00000441802	NM_005245.3	1242	AAACct/ct																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129039	2129039	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	67	383	0	ENST00000219476.3:c.2973A>G	p.Ile991Met	p.I991M	ENST00000219476	NM_000548.3	991	atA/atG																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619281	37619281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0018518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	112	329	0	ENST00000447079.4:c.957C>G	p.Tyr319Ter	p.Y319*	ENST00000447079	NM_015083.1	319	taC/taG																																																																															
CDK12	51755	MSKCC	GRCh37	17	37667781	37667781	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0018518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	86	393	1	ENST00000447079.4:c.2667-1G>T		p.X889_splice	ENST00000447079	NM_015083.1	889																																																																																
JAK2	3717	MSKCC	GRCh37	9	5050781	5050781	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	98	589	0	ENST00000381652.3:c.564A>C	p.Arg188Ser	p.R188S	ENST00000381652	NM_004972.3	188	agA/agC																																																																															
CD274	29126	MSKCC	GRCh37	9	5457414	5457414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	34	103	0	ENST00000381577.3:c.388G>A	p.Val130Ile	p.V130I	ENST00000381577	NM_014143.3	130	Gtc/Atc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267383	198267383	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	294	391	0	ENST00000335508.6:c.1974G>C	p.Trp658Cys	p.W658C	ENST00000335508	NM_012433.2	658	tgG/tgC																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659981	227659982	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	236	450	0	ENST00000305123.5:c.3473dup	p.Ala1159SerfsTer20	p.A1159Sfs*20	ENST00000305123	NM_005544.2	1158	gga/ggGa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187535426	187535426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	265	348	0	ENST00000441802.2:c.9148G>A	p.Ala3050Thr	p.A3050T	ENST00000441802	NM_005245.3	3050	Gca/Aca																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0018521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	89	332	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913283		P-0018521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	15	387	0	ENST00000263967.3:c.3129G>T	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atT																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0018521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	111	236	0	ENST00000412916.2:c.165+1G>C		p.X55_splice	ENST00000412916		55																																																																																
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0018521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	207	393	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0018522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	16	223	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
CDH1	999	MSKCC	GRCh37	16	68772228	68772262	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCCTGCCACCCTGGCTTTGACGCCGAGAGCTAC	AGCCCTGCCACCCTGGCTTTGACGCCGAGAGCTAC	-			P-0018522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	217	610	0	ENST00000261769.5:c.78_112del	p.Glu26AspfsTer21	p.E26Dfs*21	ENST00000261769	NM_004360.3	26	gAGCCCTGCCACCCTGGCTTTGACGCCGAGAGCTAC/g																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906321	50906321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	78	435	0	ENST00000440232.2:c.982G>A	p.Glu328Lys	p.E328K	ENST00000440232	NM_002691.3	328	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0018523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	332	474	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579559	7579559	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	152	533	1	ENST00000269305.4:c.128T>A	p.Leu43Ter	p.L43*	ENST00000269305	NM_001126112.2	43	tTg/tAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207201	1207201	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0018523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	137	382	0	ENST00000326873.7:c.289A>T	p.Lys97Ter	p.K97*	ENST00000326873	NM_000455.4	97	Aag/Tag																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825530	50825530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	58	405	0	ENST00000398568.2:c.2161A>G	p.Lys721Glu	p.K721E	ENST00000398568	NM_001042412.1	721	Aaa/Gaa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59878836	59878836	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0018523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	64	222	0	ENST00000259008.2:c.919-1G>T		p.X307_splice	ENST00000259008	NM_032043.2	307																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602293	10602293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	154	478	0	ENST00000171111.5:c.1285G>T	p.Gly429Cys	p.G429C	ENST00000171111	NM_203500.1	429	Ggc/Tgc																																																																															
TERT	7015	MSKCC	GRCh37	5	1279425	1279425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	72	470	0	ENST00000310581.5:c.2111C>T	p.Pro704Leu	p.P704L	ENST00000310581	NM_198253.2	704	cCt/cTt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149509451	149509451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	84	555	0	ENST00000261799.4:c.1448G>T	p.Trp483Leu	p.W483L	ENST00000261799	NM_002609.3	483	tGg/tTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434862	110434862	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	253	563	0	ENST00000375856.3:c.3539T>A	p.Val1180Asp	p.V1180D	ENST00000375856	NM_003749.2	1180	gTc/gAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023994	31023994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	52	379	0	ENST00000375687.4:c.3479G>A	p.Gly1160Asp	p.G1160D	ENST00000375687	NM_015338.5	1160	gGc/gAc																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699376	117699376	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	281	485	0	ENST00000369458.3:c.265G>T	p.Glu89Ter	p.E89*	ENST00000369458	NM_024626.3	89	Gag/Tag																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112745520	112745520	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	126	403	0	ENST00000369452.4:c.838A>G	p.Ile280Val	p.I280V	ENST00000369452	NM_007373.3	280	Ata/Gta																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137713	64137713	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	340	612	0	ENST00000334205.4:c.1814G>C	p.Gly605Ala	p.G605A	ENST00000334205	NM_003942.2	605	gGg/gCg																																																																															
ATM	472	MSKCC	GRCh37	11	108202205	108202205	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	139	444	0	ENST00000278616.4:c.7550T>G	p.Leu2517Trp	p.L2517W	ENST00000278616	NM_000051.3	2517	tTg/tGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420223	49420223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	255	541	1	ENST00000301067.7:c.15526C>T	p.His5176Tyr	p.H5176Y	ENST00000301067	NM_003482.3	5176	Cac/Tac																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549482	21549482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	99	355	0	ENST00000382592.4:c.2794C>T	p.Leu932Phe	p.L932F	ENST00000382592	NM_014572.2	932	Ctc/Ttc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678589	88678589	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	128	223	0	ENST00000360948.2:c.947G>T	p.Arg316Leu	p.R316L	ENST00000360948	NM_001012338.2	316	cGc/cTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934629	9934629	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	149	418	0	ENST00000330684.3:c.1526T>C	p.Val509Ala	p.V509A	ENST00000330684	NM_001134407.1	509	gTt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	345	575	0	ENST00000269305.4:c.796G>C	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Cga																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78921093	78921093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	305	504	1	ENST00000306801.3:c.3207G>T	p.Arg1069Ser	p.R1069S	ENST00000306801	NM_020761.2	1069	agG/agT																																																																															
STK11	6794	MSKCC	GRCh37	19	1221339	1221339	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	201	382	0	ENST00000326873.7:c.862G>T	p.Gly288Trp	p.G288W	ENST00000326873	NM_000455.4	288	Ggg/Tgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610316	10610316	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	301	682	1	ENST00000171111.5:c.394G>T	p.Val132Phe	p.V132F	ENST00000171111	NM_203500.1	132	Gtc/Ttc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138550	11138550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	59	671	1	ENST00000344626.4:c.3306C>A	p.Phe1102Leu	p.F1102L	ENST00000344626	NM_003072.3	1102	ttC/ttA																																																																															
INHA	3623	MSKCC	GRCh37	2	220440066	220440066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	237	684	0	ENST00000243786.2:c.919G>T	p.Val307Phe	p.V307F	ENST00000243786	NM_002191.3	307	Gtc/Ttc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225367693	225367693	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	43	325	0	ENST00000264414.4:c.1474C>T	p.Gln492Ter	p.Q492*	ENST00000264414	NM_003590.4	492	Cag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730882	40730882	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	569	504	0	ENST00000373198.4:c.3653T>C	p.Leu1218Pro	p.L1218P	ENST00000373198	NM_133170.3	1218	cTg/cCg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499422	89499422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	195	381	0	ENST00000336596.2:c.2592C>A	p.Asp864Glu	p.D864E	ENST00000336596	NM_005233.5	864	gaC/gaA																																																																															
KDR	3791	MSKCC	GRCh37	4	55979632	55979632	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	322	388	0	ENST00000263923.4:c.815T>A	p.Leu272His	p.L272H	ENST00000263923	NM_002253.2	272	cTt/cAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1253872	1253872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	209	411	1	ENST00000310581.5:c.3370C>T	p.Pro1124Ser	p.P1124S	ENST00000310581	NM_198253.2	1124	Ccc/Tcc																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197135	26197135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	265	304	0	ENST00000356476.2:c.344C>A	p.Ala115Asp	p.A115D	ENST00000356476		115	gCc/gAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522485	157522485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	181	709	0	ENST00000346085.5:c.4757C>T	p.Thr1586Met	p.T1586M	ENST00000346085	NM_020732.3	1586	aCg/aTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81372744	81372744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	194	324	0	ENST00000222390.5:c.790G>A	p.Asp264Asn	p.D264N	ENST00000222390	NM_000601.4	264	Gat/Aat																																																																															
PREX2	80243	MSKCC	GRCh37	8	68930152	68930152	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	161	386	2	ENST00000288368.4:c.213G>T	p.Lys71Asn	p.K71N	ENST00000288368	NM_024870.2	71	aaG/aaT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69000034	69000035	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	463	462	2	ENST00000288368.4:c.2103_2104delinsAT	p.Val702Leu	p.V702L	ENST00000288368	NM_024870.2	701	gcTGta/gcATta																																																																															
STAG2	10735	MSKCC	GRCh37	X	123220430	123220430	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	90	462	0	ENST00000218089.9:c.3087G>T	p.Gln1029His	p.Q1029H	ENST00000218089	NM_001042749.1	1029	caG/caT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0018533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	155	420	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094347	27094347	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	177	351	2	ENST00000324856.7:c.3055del	p.Glu1019ArgfsTer20	p.E1019Rfs*20	ENST00000324856	NM_006015.4	1019	Gag/ag																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473672	67473672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	199	377	1	ENST00000327367.4:c.752C>T	p.Ser251Leu	p.S251L	ENST00000327367	NM_005902.3	251	tCg/tTg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71050160	71050160	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	172	292	0	ENST00000318789.4:c.1025G>C	p.Arg342Thr	p.R342T	ENST00000318789	NM_032682.5	342	aGa/aCa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	106	366	0	ENST00000397062.3:c.92G>A	p.Gly31Glu	p.G31E	ENST00000397062	NM_006164.4	31	gGa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1432	186	652	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
RB1	5925	MSKCC	GRCh37	13	49037969	49037969	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	231	413	0	ENST00000267163.4:c.2209G>T	p.Glu737Ter	p.E737*	ENST00000267163	NM_000321.2	737	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1682	141	817	1	ENST00000269305.4:c.422G>T	p.Cys141Phe	p.C141F	ENST00000269305	NM_001126112.2	141	tGc/tTc																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792426	33792426	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1471	116	715	0	ENST00000498907.2:c.895A>G	p.Ser299Gly	p.S299G	ENST00000498907	NM_004364.3	299	Agc/Ggc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949116	71949116	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	67	357	0	ENST00000298229.2:c.3583G>C	p.Gly1195Arg	p.G1195R	ENST00000298229	NM_001567.3	1195	Ggg/Cgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431385	49431385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	149	435	1	ENST00000301067.7:c.9754C>A	p.Leu3252Met	p.L3252M	ENST00000301067	NM_003482.3	3252	Ctg/Atg																																																																															
GREM1	26585	MSKCC	GRCh37	15	33022994	33022994	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	140	461	0	ENST00000300177.4:c.103C>A	p.Pro35Thr	p.P35T	ENST00000300177	NM_001191322.1	35	Ccg/Acg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56878460	56878460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	130	439	0	ENST00000308159.5:c.2399C>T	p.Pro800Leu	p.P800L	ENST00000308159	NM_014669.4	800	cCa/cTa																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40359681	40359681	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148568485		P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1209	113	649	1	ENST00000293328.3:c.1972G>A	p.Asp658Asn	p.D658N	ENST00000293328	NM_012448.3	658	Gac/Aac																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56774215	56774215	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	54	276	0	ENST00000337432.4:c.566G>T	p.Gly189Val	p.G189V	ENST00000337432	NM_058216.2	189	gGa/gTa																																																																															
INSR	3643	MSKCC	GRCh37	19	7152938	7152938	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	116	342	0	ENST00000302850.5:c.2030G>T	p.Gly677Val	p.G677V	ENST00000302850	NM_000208.2	677	gGg/gTg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085842	16085842	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	201	463	0	ENST00000281043.3:c.1018G>T	p.Glu340Ter	p.E340*	ENST00000281043	NM_005378.4	340	Gag/Tag																																																																															
CUL3	8452	MSKCC	GRCh37	2	225339036	225339037	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	169	542	0	ENST00000264414.4:c.2232dup	p.Ile745TyrfsTer2	p.I745Yfs*2	ENST00000264414	NM_003590.4	744	-/T																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665549	138665549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	66	363	0	ENST00000330315.3:c.16C>T	p.Pro6Ser	p.P6S	ENST00000330315	NM_023067.3	6	Ccc/Tcc																																																																															
TP63	8626	MSKCC	GRCh37	3	189526312	189526312	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	107	337	2	ENST00000264731.3:c.576G>T	p.Trp192Cys	p.W192C	ENST00000264731	NM_003722.4	192	tgG/tgT																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27777855	27777855	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	18	111	0	ENST00000369163.2:c.4G>C	p.Ala2Pro	p.A2P	ENST00000369163	NM_003536.2	2	Gcg/Ccg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141566298	141566298	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	64	320	0	ENST00000220592.5:c.1114G>C	p.Ala372Pro	p.A372P	ENST00000220592	NM_012154.3	372	Gcg/Ccg																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80409422	80409422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	56	395	1	ENST00000286548.4:c.692C>T	p.Ala231Val	p.A231V	ENST00000286548	NM_002072.3	231	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1222	146	612	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0018537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1209	133	710	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	226	520	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	121	431	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0018547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	170	550	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0018547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	263	621	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0018547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	104	394	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68842405	68842405	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	282	664	0	ENST00000261769.5:c.466T>A	p.Trp156Arg	p.W156R	ENST00000261769	NM_004360.3	156	Tgg/Agg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110083	115110098	+	frameshift_variant	Frame_Shift_Del	DEL	TTCCGAAAGGGGACAT	TTCCGAAAGGGGACAT	CATGTC			P-0018547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1179	200	763	5	ENST00000257566.3:c.1780_1795delinsGACATG	p.Met594AspfsTer35	p.M594Dfs*35	ENST00000257566	NM_016569.3	594	ATGTCCCCTTTCGGAAgc/GACATGgc																																																																															
CBFB	865	MSKCC	GRCh37	16	67070659	67070659	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0018547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	94	213	0	ENST00000412916.2:c.282+1G>T		p.X94_splice	ENST00000412916		94																																																																																
NCOR1	9611	MSKCC	GRCh37	17	15950386	15950386	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	170	516	0	ENST00000268712.3:c.6558del	p.Ser2187ValfsTer2	p.S2187Vfs*2	ENST00000268712	NM_006311.3	2186	ggG/gg																																																																															
NF1	4763	MSKCC	GRCh37	17	29676136	29676136	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0018547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	143	340	0	ENST00000358273.4:c.7190-2A>G		p.X2397_splice	ENST00000358273	NM_001042492.2	2397																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44969459	44969459	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	184	603	0	ENST00000377967.4:c.4141G>T	p.Glu1381Ter	p.E1381*	ENST00000377967	NM_021140.2	1381	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0018551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	93	559	2	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273231	18273231	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1260910794		P-0018551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	44	547	2	ENST00000222254.8:c.1024G>A	p.Glu342Lys	p.E342K	ENST00000222254	NM_005027.3	342	Gag/Aag																																																																															
MSH2	4436	MSKCC	GRCh37	2	47635577	47635577	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	126	453	0	ENST00000233146.2:c.249G>C	p.Met83Ile	p.M83I	ENST00000233146	NM_000251.2	83	atG/atC																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157511337	157511337	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	62	315	0	ENST00000346085.5:c.3855G>C	p.Met1285Ile	p.M1285I	ENST00000346085	NM_020732.3	1285	atG/atC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	459	494	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0018552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	185	555	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	287	576	0	ENST00000269305.4:c.794T>C	p.Leu265Pro	p.L265P	ENST00000269305	NM_001126112.2	265	cTg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0018554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	548	563	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	68	473	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	174	187	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc																																																																															
APC	324	MSKCC	GRCh37	5	112174268	112174268	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	63	271	0	ENST00000257430.4:c.2977A>T	p.Lys993Ter	p.K993*	ENST00000257430	NM_000038.5	993	Aag/Tag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435347	18435347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	68	386	0	ENST00000266497.5:c.332C>A	p.Pro111His	p.P111H	ENST00000266497		111	cCt/cAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133254230	133254230	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	104	426	0	ENST00000320574.5:c.654T>G	p.Ile218Met	p.I218M	ENST00000320574	NM_006231.2	218	atT/atG																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026008	48026022	+	inframe_deletion	In_Frame_Del	DEL	GTTGCTCGAAAGCGG	GTTGCTCGAAAGCGG	-			P-0018554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	64	234	0	ENST00000234420.5:c.886_900del	p.Val296_Arg300del	p.V296_R300del	ENST00000234420	NM_000179.2	296	GTTGCTCGAAAGCGG/-																																																																															
NF2	4771	MSKCC	GRCh37	22	30064395	30064395	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	100	353	0	ENST00000338641.4:c.959A>T	p.Gln320Leu	p.Q320L	ENST00000338641	NM_000268.3	320	cAg/cTg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131923640	131923640	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	62	333	0	ENST00000265335.6:c.910C>G	p.Leu304Val	p.L304V	ENST00000265335		304	Cta/Gta																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38273432	38273432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	127	563	0	ENST00000425967.3:c.1903G>A	p.Ala635Thr	p.A635T	ENST00000425967	NM_001174067.1	635	Gcc/Acc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006855	47006855	+	5_prime_UTR_variant	5'UTR	SNP	G	G	A			P-0018554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	91	445	0	ENST00000329236.7:c.-26G>A		p.*9*	ENST00000329236	NM_001204466.1																																																																																	
EPHB1	2047	MSKCC	GRCh37	3	134967264	134967264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	92	463	1	ENST00000398015.3:c.2603G>A	p.Arg868Gln	p.R868Q	ENST00000398015	NM_004441.4	868	cGg/cAg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186501406	186501406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	42	192	1	ENST00000323963.5:c.7G>A	p.Gly3Ser	p.G3S	ENST00000323963		3	Ggt/Agt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056424	26056424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	41	197	0	ENST00000343677.2:c.233G>A	p.Ser78Asn	p.S78N	ENST00000343677	NM_005319.3	78	aGc/aAc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797310	135797313	+	frameshift_variant	Frame_Shift_Del	DEL	GTGC	GTGC	AT			P-0018556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	125	291	2	ENST00000298552.3:c.556_559delinsAT	p.Ala186IlefsTer31	p.A186Ifs*31	ENST00000298552	NM_001162426.1	186	GCACtc/ATtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	354	586	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	277	381	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112176150	112176150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	96	513	0	ENST00000257430.4:c.4859C>T	p.Ser1620Leu	p.S1620L	ENST00000257430	NM_000038.5	1620	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579433	7579433	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1064793279		P-0018557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	262	548	0	ENST00000269305.4:c.254del	p.Pro85LeufsTer38	p.P85Lfs*38	ENST00000269305	NM_001126112.2	85	cCt/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49423199	49423199	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	89	559	0	ENST00000301067.7:c.14060A>G	p.Gln4687Arg	p.Q4687R	ENST00000301067	NM_003482.3	4687	cAg/cGg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349415	89349415	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	149	668	0	ENST00000301030.4:c.3535A>C	p.Lys1179Gln	p.K1179Q	ENST00000301030	NM_001256183.1	1179	Aag/Cag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5265117	5265117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	213	635	2	ENST00000357368.4:c.470C>T	p.Ala157Val	p.A157V	ENST00000357368	NM_002850.3	157	gCa/gTa																																																																															
BARD1	580	MSKCC	GRCh37	2	215610572	215610579	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TGTTCATC	TGTTCATC	-			P-0018557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	47	468	0	ENST00000260947.4:c.1678-1_1684del		p.X560_splice	ENST00000260947	NM_000465.2	560																																																																																
ATRX	546	MSKCC	GRCh37	X	76855249	76855249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	89	616	1	ENST00000373344.5:c.5738C>T	p.Ser1913Leu	p.S1913L	ENST00000373344	NM_000489.3	1913	tCa/tTa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508988	106508988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	110	309	2	ENST00000359195.3:c.982G>T	p.Asp328Tyr	p.D328Y	ENST00000359195	NM_002649.2	328	Gac/Tac																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0018560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1311	115	593	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0018560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1219	104	536	1	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076911	41076911	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1348	83	505	0	ENST00000373198.4:c.1509C>A	p.Tyr503Ter	p.Y503*	ENST00000373198	NM_133170.3	503	taC/taA																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246498755	246498755	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	62	438	0	ENST00000388985.4:c.250A>G	p.Lys84Glu	p.K84E	ENST00000388985		84	Aag/Gag																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953149	17953149	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1182	116	561	0	ENST00000458235.1:c.837C>G	p.Ile279Met	p.I279M	ENST00000458235	NM_000215.3	279	atC/atG																																																																															
SRC	6714	MSKCC	GRCh37	20	36031278	36031278	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	71	345	0	ENST00000358208.4:c.1397A>G	p.Tyr466Cys	p.Y466C	ENST00000358208		466	tAc/tGc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41420030	41420030	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	79	348	0	ENST00000373198.4:c.291G>T	p.Glu97Asp	p.E97D	ENST00000373198	NM_133170.3	97	gaG/gaT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8331713	8331713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	68	385	0	ENST00000356435.5:c.5403G>T	p.Arg1801Ser	p.R1801S	ENST00000356435		1801	agG/agT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0018566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	208	537	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	456	528	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																																																															
ATM	472	MSKCC	GRCh37	11	108183190	108183191	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	269	401	0	ENST00000278616.4:c.5977dupA	p.Ser1993LysfsTer2	p.S1993Kfs*2	ENST00000278616	NM_000051.3	1991	gaa/gAaa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576110	88576110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	251	516	0	ENST00000360948.2:c.1563C>A	p.His521Gln	p.H521Q	ENST00000360948	NM_001012338.2	521	caC/caA																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217784	2217785	+	missense_variant	Missense_Mutation	DNP	GC	GC	CT			P-0018566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	92	549	1	ENST00000398665.3:c.2558_2559delinsCT	p.Arg853Pro	p.R853P	ENST00000398665	NM_032482.2	853	cGC/cCT																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458359	12458359	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	120	570	0	ENST00000287820.6:c.976G>C	p.Glu326Gln	p.E326Q	ENST00000287820	NM_015869.4	326	Gag/Cag																																																																															
SDHA	6389	MSKCC	GRCh37	5	233693	233693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	39	310	0	ENST00000264932.6:c.997G>T	p.Val333Phe	p.V333F	ENST00000264932	NM_004168.2	333	Gtc/Ttc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672787	86672787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	163	277	2	ENST00000274376.6:c.2274G>T	p.Arg758Ser	p.R758S	ENST00000274376	NM_002890.2	758	agG/agT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509421	106509421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	162	502	0	ENST00000359195.3:c.1415G>T	p.Arg472Leu	p.R472L	ENST00000359195	NM_002649.2	472	cGt/cTt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028638	12028638	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	215	269	3	ENST00000353533.5:c.841C>T	p.Arg281Ter	p.R281*	ENST00000353533	NM_003010.3	281	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779647	3779663	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCTTCATCTTCTGG	CCCGCTTCATCTTCTGG	-			P-0018573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	424	383	0	ENST00000262367.5:c.5385_5401del	p.Gln1796GlyfsTer164	p.Q1796Gfs*164	ENST00000262367	NM_004380.2	1795	tgCCAGAAGATGAAGCGGGtg/tgtg																																																																															
CCND1	595	MSKCC	GRCh37	11	69457866	69457866	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1328	77	496	0	ENST00000227507.2:c.266T>A	p.Leu89Gln	p.L89Q	ENST00000227507	NM_053056.2	89	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578269	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATCC			P-0018574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1404	96	468	0	ENST00000269305.4:c.580_581insGGAT	p.Leu194ArgfsTer16	p.L194Rfs*16	ENST00000269305	NM_001126112.2	194	ctt/cGGATtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0018581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	317	409	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	197	295	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470920	25470920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	276	421	1	ENST00000264709.3:c.841G>A	p.Glu281Lys	p.E281K	ENST00000264709	NM_175629.2	281	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0018588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	337	650	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175193	112175193	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	129	204	0	ENST00000257430.4:c.3904delC	p.Leu1302CysfsTer3	p.L1302Cfs*3	ENST00000257430	NM_000038.5	1301	aCc/ac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912173	114912173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	147	486	0	ENST00000543371.1:c.1243C>T	p.Pro415Ser	p.P415S	ENST00000543371	NM_001198531.1	415	Ccc/Tcc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004609	16004609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	122	399	0	ENST00000268712.3:c.2645C>T	p.Thr882Met	p.T882M	ENST00000268712	NM_006311.3	882	aCg/aTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807913	3807913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	375	493	0	ENST00000262367.5:c.3506G>A	p.Arg1169His	p.R1169H	ENST00000262367	NM_004380.2	1169	cGc/cAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274846	41274846	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	137	433	0	ENST00000349496.5:c.1096T>A	p.Leu366Ile	p.L366I	ENST00000349496	NM_001904.3	366	Tta/Ata																																																																															
CD274	29126	MSKCC	GRCh37	9	5463005	5463005	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	139	445	0	ENST00000381577.3:c.566A>C	p.Lys189Thr	p.K189T	ENST00000381577	NM_014143.3	189	aAg/aCg																																																																															
AR	367	MSKCC	GRCh37	X	66765733	66765733	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	160	411	0	ENST00000374690.3:c.745C>A	p.Leu249Met	p.L249M	ENST00000374690	NM_000044.3	249	Ctg/Atg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0018592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	402	402	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178169	56178169	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	270	479	1	ENST00000399503.3:c.3142C>T	p.Gln1048Ter	p.Q1048*	ENST00000399503	NM_005921.1	1048	Cag/Tag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522040	157522040	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	225	390	1	ENST00000346085.5:c.4312A>T	p.Ile1438Phe	p.I1438F	ENST00000346085	NM_020732.3	1438	Atc/Ttc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859843	151859847	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTT	TTCTT	-			P-0018592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	231	221	0	ENST00000262189.6:c.10815_10819del	p.Lys3605AsnfsTer8	p.K3605Nfs*8	ENST00000262189	NM_170606.2	3605	aaAAGAAca/aaca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	204	395	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs770248150		P-0018593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	108	393	0	ENST00000256078.4:c.351A>C	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaC																																																																															
APC	324	MSKCC	GRCh37	5	112175606	112175606	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	160	370	0	ENST00000257430.4:c.4316del	p.Pro1439LeufsTer34	p.P1439Lfs*34	ENST00000257430	NM_000038.5	1439	Cct/ct																																																																															
KDR	3791	MSKCC	GRCh37	4	55968633	55968633	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200338299		P-0018593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	140	462	0	ENST00000263923.4:c.2030C>T	p.Thr677Met	p.T677M	ENST00000263923	NM_002253.2	677	aCg/aTg																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225408	26225408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	56	124	0	ENST00000360408.1:c.26G>A	p.Arg9His	p.R9H	ENST00000360408	NM_003532.2	9	cGt/cAt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944325	81944325	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	179	383	0	ENST00000359376.3:c.1934C>T	p.Pro645Leu	p.P645L	ENST00000359376	NM_002661.3	645	cCg/cTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41548348	41548349	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0018593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	142	358	0	ENST00000263253.7:c.3139_3140del	p.Lys1047AspfsTer41	p.K1047Dfs*41	ENST00000263253	NM_001429.3	1046	AAa/a																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521478	187521478	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	131	400	0	ENST00000441802.2:c.11677G>C	p.Gly3893Arg	p.G3893R	ENST00000441802	NM_005245.3	3893	Gga/Cga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959240	2959240	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148354898		P-0018593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	132	436	0	ENST00000396946.4:c.2276G>A	p.Arg759Gln	p.R759Q	ENST00000396946	NM_032415.4	759	cGg/cAg																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540123	23540123	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	52	113	0	ENST00000380871.4:c.280G>T	p.Glu94Ter	p.E94*	ENST00000380871	NM_006167.3	94	Gag/Tag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68982088	68982088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	166	519	1	ENST00000288368.4:c.1462C>T	p.Arg488Cys	p.R488C	ENST00000288368	NM_024870.2	488	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0018596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	400	619	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46125067	46125067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	51	201	0	ENST00000334344.6:c.254C>T	p.Ala85Val	p.A85V	ENST00000334344	NM_152641.2	85	gCt/gTt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214422	5214422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	216	489	0	ENST00000357368.4:c.4564G>A	p.Asp1522Asn	p.D1522N	ENST00000357368	NM_002850.3	1522	Gat/Aat																																																																															
ALK	238	MSKCC	GRCh37	2	29455286	29455286	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	61	444	0	ENST00000389048.3:c.2516T>C	p.Ile839Thr	p.I839T	ENST00000389048	NM_004304.4	839	aTc/aCc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39239394	39239394	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	75	503	0	ENST00000402219.2:c.2263C>T	p.Gln755Ter	p.Q755*	ENST00000402219	NM_005633.3	755	Cag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163139	47163139	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0018596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	125	303	0	ENST00000409792.3:c.2987C>G	p.Ser996Ter	p.S996*	ENST00000409792	NM_014159.6	996	tCa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	141	581	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220717	1220717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0018598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	124	441	0	ENST00000326873.7:c.734+1G>T		p.X245_splice	ENST00000326873	NM_000455.4	245																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602340	10602340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	161	620	3	ENST00000171111.5:c.1238G>T	p.Arg413Leu	p.R413L	ENST00000171111	NM_203500.1	413	cGt/cTt																																																																															
CIC	23152	MSKCC	GRCh37	19	42791271	42791271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1152	163	658	0	ENST00000575354.2:c.331C>T	p.Pro111Ser	p.P111S	ENST00000575354	NM_015125.3	111	Cca/Tca																																																																															
CIC	23152	MSKCC	GRCh37	19	42791714	42791714	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	118	458	0	ENST00000575354.2:c.600C>G	p.Ile200Met	p.I200M	ENST00000575354	NM_015125.3	200	atC/atG																																																																															
CIC	23152	MSKCC	GRCh37	19	42794838	42794838	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	118	471	1	ENST00000575354.2:c.1918C>T	p.Gln640Ter	p.Q640*	ENST00000575354	NM_015125.3	640	Caa/Taa																																																																															
CIC	23152	MSKCC	GRCh37	19	42795832	42795832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	109	548	1	ENST00000575354.2:c.2821C>T	p.Pro941Ser	p.P941S	ENST00000575354	NM_015125.3	941	Cca/Tca																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729951	30729954	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-			P-0018598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	107	437	0	ENST00000359013.4:c.1547_1550del	p.Val516GlyfsTer26	p.V516Gfs*26	ENST00000359013	NM_001024847.2	516	gTGTTg/gg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881392	37881392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	1885	593	0	ENST00000269571.5:c.2584A>G	p.Thr862Ala	p.T862A	ENST00000269571		862	Aca/Gca																																																																															
NUF2	83540	MSKCC	GRCh37	1	163310156	163310156	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0018602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	63	551	0	ENST00000271452.3:c.609A>G	p.Ile203Met	p.I203M	ENST00000271452	NM_145697.2	203	atA/atG																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612638	228612638	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146830002		P-0018602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	38	442	1	ENST00000366696.1:c.389G>A	p.Arg130His	p.R130H	ENST00000366696	NM_003493.2	130	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577027	7577028	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0018602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	178	558	0	ENST00000269305.4:c.910_911del	p.Thr304Ter	p.T304*	ENST00000269305	NM_001126112.2	304	ACt/t																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228225	53228225	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	132	503	0	ENST00000375401.3:c.2177A>G	p.Asp726Gly	p.D726G	ENST00000375401	NM_004187.3	726	gAc/gGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	295	555	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0018603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	479	658	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	336	441	0	ENST00000267101.3:c.889G>C	p.Asp297His	p.D297H	ENST00000267101	NM_001982.3	297	Gat/Cat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593405	48593405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	86	263	0	ENST00000342988.3:c.1156G>A	p.Gly386Ser	p.G386S	ENST00000342988	NM_005359.5	386	Ggt/Agt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267186	41267186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	131	358	0	ENST00000349496.5:c.770C>T	p.Thr257Ile	p.T257I	ENST00000349496	NM_001904.3	257	aCa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0018604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	436	565	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578206	7578207	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0018604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	518	671	0	ENST00000269305.4:c.642_643del	p.His214GlnfsTer7	p.H214Qfs*7	ENST00000269305	NM_001126112.2	214	caTAgt/cagt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096967	11096967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	535	636	1	ENST00000344626.4:c.458C>T	p.Pro153Leu	p.P153L	ENST00000344626	NM_003072.3	153	cCg/cTg																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981586	101981586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	142	159	2	ENST00000282441.5:c.7C>T	p.Pro3Ser	p.P3S	ENST00000282441	NM_001130145.2	3	Ccc/Tcc																																																																															
CCND2	894	MSKCC	GRCh37	12	4409102	4409102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	155	431	0	ENST00000261254.3:c.797G>A	p.Arg266His	p.R266H	ENST00000261254	NM_001759.3	266	cGt/cAt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523532	106523532	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	294	407	0	ENST00000359195.3:c.2684C>A	p.Thr895Lys	p.T895K	ENST00000359195	NM_002649.2	895	aCa/aAa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974798	21974798	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	48	75	0	ENST00000304494.5:c.29del	p.Glu10GlyfsTer16	p.E10Gfs*16	ENST00000304494	NM_000077.4	10	gAg/gg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37002716	37002716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	663	458	1	ENST00000358127.4:c.533C>T	p.Ser178Leu	p.S178L	ENST00000358127	NM_001280556.1	178	tCg/tTg																																																																															
AR	367	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	386	211	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425518	49425519	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	375	478	0	ENST00000301067.7:c.12969dup	p.Pro4324ThrfsTer10	p.P4324Tfs*10	ENST00000301067	NM_003482.3	4323	-/A																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212537960	212537961	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	360	466	0	ENST00000342788.4:c.1644dup	p.Gly549TrpfsTer8	p.G549Wfs*8	ENST00000342788	NM_005235.2	548	-/T																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	98	464	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2647662	2647662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	290	551	0	ENST00000342085.4:c.1565C>A	p.Thr522Lys	p.T522K	ENST00000342085	NM_002613.4	522	aCg/aAg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41249264	41249264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1288	150	648	1	ENST00000357654.3:c.590G>A	p.Cys197Tyr	p.C197Y	ENST00000357654	NM_007294.3	197	tGc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0018627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	237	728	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
HRAS	3265	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28933406		P-0018627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	276	705	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060780	38060797	+	inframe_deletion	In_Frame_Del	DEL	GTTGATGGAGAACGGGTG	GTTGATGGAGAACGGGTG	-			P-0018627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	189	999	1	ENST00000250448.2:c.1192_1209del	p.His398_Asn403del	p.H398_N403del	ENST00000250448	NM_004496.3	398	CACCCGTTCTCCATCAAC/-																																																																															
SETD8	387893	MSKCC	GRCh37	12	123875243	123875243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	25	143	1	ENST00000330479.4:c.199C>T	p.Arg67Cys	p.R67C	ENST00000330479	NM_020382.3	67	Cgt/Tgt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71015171	71015179	+	frameshift_variant	Frame_Shift_Del	DEL	TAGTGTATA	TAGTGTATA	AT			P-0018627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	45	296	1	ENST00000318789.4:c.1751_1759delinsAT	p.Leu584HisfsTer13	p.L584Hfs*13	ENST00000318789	NM_032682.5	584	cTATACACTAcc/cATcc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588956	67588967	+	inframe_deletion	In_Frame_Del	DEL	TACAGCAGACGG	TACAGCAGACGG	-			P-0018627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	58	308	0	ENST00000274335.5:c.1047_1058del	p.Asp349_Gly353delinsGlu	p.D349_G353delinsE	ENST00000274335		349	gaTACAGCAGACGGg/gag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0018639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	81	365	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311619	15311621	+	inframe_deletion	In_Frame_Del	DEL	AGC	AGC	-	rs772632118		P-0018639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	10	64	0	ENST00000263388.2:c.96_98del	p.Leu33del	p.L33del	ENST00000263388	NM_000435.2	32	ctGCTa/cta																																																																															
BRAF	673	MSKCC	GRCh37	7	140453138	140453139	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTA			P-0018639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	81	410	0	ENST00000288602.6:c.1794_1796dupTAC	p.Thr599dup	p.T599dup	ENST00000288602	NM_004333.4	599	aca/acTACa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983126	201983127	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	94	458	0	ENST00000359651.3:c.976dup	p.Tyr326LeufsTer145	p.Y326Lfs*145	ENST00000359651		325	-/T																																																																															
NBN	4683	MSKCC	GRCh37	8	90992961	90992961	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs780470185		P-0018639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	87	296	0	ENST00000265433.3:c.480+1G>A		p.X160_splice	ENST00000265433	NM_002485.4	160																																																																																
GATA3	2625	MSKCC	GRCh37	10	8100402	8100403	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	211	587	1	ENST00000346208.3:c.380dup	p.Pro129AlafsTer174	p.P129Afs*174	ENST00000346208		126	tcc/tCcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	19	474	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168741	56168744	+	frameshift_variant	Frame_Shift_Del	DEL	GAAG	GAAG	-			P-0018640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	166	363	0	ENST00000399503.3:c.1598_1601del	p.Arg533IlefsTer23	p.R533Ifs*23	ENST00000399503	NM_005921.1	532	cGAAGg/cg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155733	56155734	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	A			P-0018640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	117	282	0	ENST00000399503.3:c.825_826delinsA	p.Pro276GlnfsTer36	p.P276Qfs*36	ENST00000399503	NM_005921.1	275	tcCCca/tcAca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	483	534	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610243	10610243	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	286	665	0	ENST00000171111.5:c.467T>C	p.Met156Thr	p.M156T	ENST00000171111	NM_203500.1	156	aTg/aCg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11552822		P-0018643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	176	278	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767326		P-0018643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	122	386	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0018643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	437	434	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5210575	5210575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	183	479	1	ENST00000357368.4:c.5392C>T	p.Arg1798Cys	p.R1798C	ENST00000357368	NM_002850.3	1798	Cgc/Tgc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121311	29121311	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	286	623	0	ENST00000328354.6:c.364G>C	p.Glu122Gln	p.E122Q	ENST00000328354	NM_007194.3	122	Gaa/Caa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982138	93982138	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0018643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	130	292	0	ENST00000369303.4:c.1327C>G	p.Pro443Ala	p.P443A	ENST00000369303	NM_004440.3	443	Ccc/Gcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	186	564	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	250	632	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584763	48584763	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	102	565	0	ENST00000342988.3:c.842del	p.Pro281LeufsTer55	p.P281Lfs*55	ENST00000342988	NM_005359.5	281	Cct/ct																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31368203	31368203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	191	561	0	ENST00000328111.2:c.74G>A	p.Gly25Glu	p.G25E	ENST00000328111	NM_006892.3	25	gGg/gAg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71101693	71101693	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	35	208	0	ENST00000318789.4:c.505A>G	p.Lys169Glu	p.K169E	ENST00000318789	NM_032682.5	169	Aaa/Gaa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032564	47032564	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	222	554	0	ENST00000329236.7:c.241del	p.Glu81ArgfsTer4	p.E81Rfs*4	ENST00000329236	NM_001204466.1	80	cGg/cg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0018645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	149	758	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
RET	5979	MSKCC	GRCh37	10	43619232	43619232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	151	560	0	ENST00000355710.3:c.2915G>A	p.Arg972Lys	p.R972K	ENST00000355710	NM_020975.4	972	aGg/aAg																																																																															
TET1	80312	MSKCC	GRCh37	10	70446287	70446291	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0018645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	119	744	0	ENST00000373644.4:c.5229_5233del	p.Lys1743AsnfsTer25	p.K1743Nfs*25	ENST00000373644	NM_030625.2	1743	AAAAGa/a																																																																															
ARAF	369	MSKCC	GRCh37	X	47426832	47426833	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0018645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	49	266	0	ENST00000377045.4:c.1076+2dup		p.X359_splice	ENST00000377045	NM_001654.4	359																																																																																
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018648-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			764	24	1048	2	ENST00000269305.4:c.380C>A	p.Ser127Tyr	p.S127Y	ENST00000269305	NM_001126112.2	127	tCc/tAc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870966	12870966	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	80	416	0	ENST00000228872.4:c.193C>T	p.Gln65Ter	p.Q65*	ENST00000228872	NM_004064.3	65	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	406	439	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	203	526	1	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0018651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	325	723	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	311	728	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0018651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	357	705	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800850	120800850	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1216	526	1028	0	ENST00000257552.2:c.398G>T	p.Gly133Val	p.G133V	ENST00000257552	NM_002442.3	133	gGg/gTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438267	56438268	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0018651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	301	602	0	ENST00000407977.2:c.725_726del	p.Gln242ProfsTer16	p.Q242Pfs*16	ENST00000407977		242	cAG/c																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023008	27023010	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			107	10	103	0	ENST00000324856.7:c.126_128delGGC	p.Ala45del	p.A45del	ENST00000324856	NM_006015.4	38	gaGGCg/gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578226	7578226	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1464727668		P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			636	155	676	0	ENST00000269305.4:c.623A>T	p.Asp208Val	p.D208V	ENST00000269305	NM_001126112.2	208	gAc/gTc																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154836	2154836	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			482	166	656	0	ENST00000434045.2:c.385C>A	p.Arg129Ser	p.R129S	ENST00000434045	NM_001127598.1	129	Cgc/Agc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18491385	18491385	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			608	79	460	0	ENST00000266497.5:c.1298A>C	p.Glu433Ala	p.E433A	ENST00000266497		433	gAa/gCa																																																																															
MGA	23269	MSKCC	GRCh37	15	41989108	41989108	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			608	112	601	0	ENST00000219905.7:c.1900A>T	p.Lys634Ter	p.K634*	ENST00000219905	NM_001164273.1	634	Aag/Tag																																																																															
B2M	567	MSKCC	GRCh37	15	45007496	45007646	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAATGGAATTGGGAGAAATCGATGACCAAATGTAAACACTTGGTGCCTGATATAGCTTGACACCAAGTTAGCCCCAAGTGAAATACCCTGGCAATATTAATGTGTCTTTTCCCGATATTCCTCAGGTACTCCAAAGATTCAGGTTTACTCA	AAATGGAATTGGGAGAAATCGATGACCAAATGTAAACACTTGGTGCCTGATATAGCTTGACACCAAGTTAGCCCCAAGTGAAATACCCTGGCAATATTAATGTGTCTTTTCCCGATATTCCTCAGGTACTCCAAAGATTCAGGTTTACTCA	-			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			26	10	24	0	ENST00000558401.1:c.68-125_93del		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
NTRK3	4916	MSKCC	GRCh37	15	88670457	88670457	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			372	83	375	0	ENST00000360948.2:c.1229T>A	p.Phe410Tyr	p.F410Y	ENST00000360948	NM_001012338.2	410	tTt/tAt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934504	9934504	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			479	100	484	0	ENST00000330684.3:c.1651G>T	p.Glu551Ter	p.E551*	ENST00000330684	NM_001134407.1	551	Gaa/Taa																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30128306	30128306	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			633	106	604	2	ENST00000263025.4:c.926G>C	p.Arg309Pro	p.R309P	ENST00000263025	NM_002746.2	309	cGg/cCg																																																																															
CD79B	974	MSKCC	GRCh37	17	62007659	62007659	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			581	141	514	0	ENST00000392795.3:c.208A>T	p.Ser70Cys	p.S70C	ENST00000392795	NM_001039933.1	70	Agc/Tgc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133787	55133787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			534	141	544	0	ENST00000257290.5:c.1000C>A	p.His334Asn	p.H334N	ENST00000257290	NM_006206.4	334	Cat/Aat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542692	187542692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			631	123	472	3	ENST00000441802.2:c.5048G>A	p.Gly1683Glu	p.G1683E	ENST00000441802	NM_005245.3	1683	gGg/gAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629874	187629874	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			917	190	690	0	ENST00000441802.2:c.1108G>T	p.Asp370Tyr	p.D370Y	ENST00000441802	NM_005245.3	370	Gat/Tat																																																																															
MDC1	9656	MSKCC	GRCh37	6	30668376	30668376	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			792	123	579	0	ENST00000376406.3:c.6136T>A	p.Phe2046Ile	p.F2046I	ENST00000376406	NM_014641.2	2046	Ttc/Atc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066636	94066636	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			552	353	572	1	ENST00000369303.4:c.1123G>T	p.Glu375Ter	p.E375*	ENST00000369303	NM_004440.3	375	Gag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81346560	81346560	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			617	171	462	1	ENST00000222390.5:c.1393C>A	p.Pro465Thr	p.P465T	ENST00000222390	NM_000601.4	465	Cct/Act																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38172948	38172948	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			791	54	559	1	ENST00000317025.8:c.2101G>T	p.Asp701Tyr	p.D701Y	ENST00000317025	NM_023034.1	701	Gac/Tac																																																																															
TEK	7010	MSKCC	GRCh37	9	27192514	27192514	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			826	56	541	0	ENST00000380036.4:c.1517A>C	p.Tyr506Ser	p.Y506S	ENST00000380036	NM_000459.3	506	tAt/tCt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229656	98229656	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	74	364	0	ENST00000331920.6:c.2302A>G	p.Thr768Ala	p.T768A	ENST00000331920	NM_000264.3	768	Acc/Gcc																																																																															
BTK	695	MSKCC	GRCh37	X	100626618	100626618	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	A			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	140	215	0	ENST00000308731.7:c.309+3G>T		p.X103_splice	ENST00000308731	NM_000061.2	103																																																																																
GATA3	2625	MSKCC	GRCh37	10	8115717	8115718	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTATG			P-0018655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	370	635	0	ENST00000346208.3:c.1064_1068dup	p.Lys357LeufsTer2	p.K357Lfs*2	ENST00000346208		355	act/aCTATGct																																																																															
CBFB	865	MSKCC	GRCh37	16	67070611	67070612	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	286	333	0	ENST00000412916.2:c.238dup	p.Thr80AsnfsTer3	p.T80Nfs*3	ENST00000412916		79	caa/cAaa																																																																															
SDHB	6390	MSKCC	GRCh37	1	17380450	17380450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	91	711	0	ENST00000375499.3:c.65G>A	p.Cys22Tyr	p.C22Y	ENST00000375499	NM_003000.2	22	tGc/tAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828359	72828359	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	33	542	0	ENST00000268489.5:c.8222C>G	p.Ala2741Gly	p.A2741G	ENST00000268489	NM_006885.3	2741	gCt/gGt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349146	89349146	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	98	1103	1	ENST00000301030.4:c.3804del	p.Lys1269SerfsTer49	p.K1269Sfs*49	ENST00000301030	NM_001256183.1	1268	agG/ag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226238	2226243	+	inframe_deletion	In_Frame_Del	DEL	AAGTGG	AAGTGG	-			P-0018659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	77	928	0	ENST00000398665.3:c.3722_3727del	p.Trp1241_Lys1242del	p.W1241_K1242del	ENST00000398665	NM_032482.2	1240	AAGTGG/-																																																																															
ROS1	6098	MSKCC	GRCh37	6	117677840	117677840	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	41	311	0	ENST00000368508.3:c.4093C>A	p.Leu1365Met	p.L1365M	ENST00000368508	NM_002944.2	1365	Ctg/Atg																																																																															
BRAF	673	MSKCC	GRCh37	7	140624399	140624422	+	inframe_deletion	In_Frame_Del	DEL	GGCCGCGGCGCCGGCGCCGGCGCC	GGCCGCGGCGCCGGCGCCGGCGCC	-			P-0018659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	107	112	0	ENST00000288602.6:c.82_105del	p.Gly28_Ala35del	p.G28_A35del	ENST00000288602	NM_004333.4	28	GGCGCCGGCGCCGGCGCCGCGGCC/-																																																																															
BRAF	673	MSKCC	GRCh37	7	140624403	140624403	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	12	95	0	ENST00000288602.6:c.101C>A	p.Ala34Glu	p.A34E	ENST00000288602	NM_004333.4	34	gCg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	517	752	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	128	435	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	101	333	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	209	575	0	ENST00000171111.5:c.959G>T	p.Arg320Leu	p.R320L	ENST00000171111	NM_203500.1	320	cGg/cTg																																																																															
PARP1	142	MSKCC	GRCh37	1	226578181	226578181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	94	534	0	ENST00000366794.5:c.547G>A	p.Gly183Ser	p.G183S	ENST00000366794	NM_001618.3	183	Ggc/Agc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711350	114711350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	81	373	0	ENST00000543371.1:c.365C>T	p.Ser122Leu	p.S122L	ENST00000543371	NM_001198531.1	122	tCg/tTg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942761	44942761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	155	389	0	ENST00000377967.4:c.3341C>T	p.Ser1114Leu	p.S1114L	ENST00000377967	NM_021140.2	1114	tCa/tTa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361152	66361152	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	126	381	1	ENST00000273854.3:c.1020G>T	p.Lys340Asn	p.K340N	ENST00000273854	NM_004439.5	340	aaG/aaT																																																																															
FH	2271	MSKCC	GRCh37	1	241682982	241682982	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	210	345	0	ENST00000366560.3:c.41T>C	p.Leu14Pro	p.L14P	ENST00000366560	NM_000143.3	14	cTc/cCc																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50484313	50484313	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	323	737	0	ENST00000394963.4:c.1073C>G	p.Pro358Arg	p.P358R	ENST00000394963	NM_003076.4	358	cCt/cGt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81554344	81554344	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	281	756	0	ENST00000298171.2:c.364C>A	p.Leu122Ile	p.L122I	ENST00000298171	NM_000369.2	122	Ctc/Atc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843423	3843423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	119	436	0	ENST00000262367.5:c.1180C>T	p.His394Tyr	p.H394Y	ENST00000262367	NM_004380.2	394	Cac/Tac																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14014188	14014220	+	inframe_deletion	In_Frame_Del	DEL	GCCTGCCTGGTGCTGGTGCTCAACACGCAGCCG	GCCTGCCTGGTGCTGGTGCTCAACACGCAGCCG	-			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	70	336	0	ENST00000311895.7:c.169_201del	p.Cys57_Ala67del	p.C57_A67del	ENST00000311895	NM_005236.2	56	GCCTGCCTGGTGCTGGTGCTCAACACGCAGCCG/-																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59853836	59853836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	163	731	0	ENST00000259008.2:c.2023G>A	p.Glu675Lys	p.E675K	ENST00000259008	NM_032043.2	675	Gaa/Aaa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39573270	39573270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	130	576	0	ENST00000262039.4:c.751G>A	p.Glu251Lys	p.E251K	ENST00000262039	NM_002647.2	251	Gaa/Aaa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207059	1207059	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	256	760	1	ENST00000326873.7:c.147C>G	p.Tyr49Ter	p.Y49*	ENST00000326873	NM_000455.4	49	taC/taG																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308346	30308346	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	170	762	0	ENST00000262643.3:c.360G>C	p.Met120Ile	p.M120I	ENST00000262643	NM_001238.2	120	atG/atC																																																																															
MSH2	4436	MSKCC	GRCh37	2	47705659	47705659	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	129	393	0	ENST00000233146.2:c.2458+1G>A		p.X820_splice	ENST00000233146	NM_000251.2	820																																																																																
SF3B1	23451	MSKCC	GRCh37	2	198269824	198269824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	300	685	0	ENST00000335508.6:c.1515G>T	p.Lys505Asn	p.K505N	ENST00000335508	NM_012433.2	505	aaG/aaT																																																																															
CASP8	841	MSKCC	GRCh37	2	202149940	202149940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	184	666	0	ENST00000358485.4:c.1381G>A	p.Gly461Arg	p.G461R	ENST00000358485	NM_001080125.1	461	Ggg/Agg																																																																															
INHA	3623	MSKCC	GRCh37	2	220440096	220440096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	193	881	0	ENST00000243786.2:c.949C>T	p.Pro317Ser	p.P317S	ENST00000243786	NM_002191.3	317	Ccc/Tcc																																																																															
EP300	2033	MSKCC	GRCh37	22	41556650	41556650	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	66	552	0	ENST00000263253.7:c.3595C>G	p.His1199Asp	p.H1199D	ENST00000263253	NM_001429.3	1199	Cat/Gat																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502828	186502828	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	170	602	0	ENST00000323963.5:c.286G>C	p.Glu96Gln	p.E96Q	ENST00000323963		96	Gag/Cag																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876479	35876479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	163	625	0	ENST00000303115.3:c.1271G>T	p.Gly424Val	p.G424V	ENST00000303115	NM_002185.3	424	gGa/gTa																																																																															
PIM1	5292	MSKCC	GRCh37	6	37141754	37141754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	156	667	0	ENST00000373509.5:c.829G>A	p.Asp277Asn	p.D277N	ENST00000373509	NM_002648.3	277	Gat/Aat																																																																															
ROS1	6098	MSKCC	GRCh37	6	117642434	117642434	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	235	726	0	ENST00000368508.3:c.5765G>T	p.Cys1922Phe	p.C1922F	ENST00000368508	NM_002944.2	1922	tGc/tTc																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519619	137519619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	99	390	0	ENST00000367739.4:c.1019C>T	p.Pro340Leu	p.P340L	ENST00000367739	NM_000416.2	340	cCa/cTa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069158	5069158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	83	663	0	ENST00000381652.3:c.1463C>T	p.Ser488Leu	p.S488L	ENST00000381652	NM_004972.3	488	tCa/tTa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223484	53223485	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	220	243	0	ENST00000375401.3:c.3874_3875del	p.Ala1292GlnfsTer7	p.A1292Qfs*7	ENST00000375401	NM_004187.3	1292	GCc/c																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0018661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	15452	591	1	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228980	36228980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	147	570	0	ENST00000222270.7:c.7760G>A	p.Arg2587Gln	p.R2587Q	ENST00000222270	NM_014727.1	2587	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578551	7578558	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTACTGT	AGTACTGT	-			P-0018661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1330	443	877	0	ENST00000269305.4:c.376-4_379delACAGTACT		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
CARM1	10498	MSKCC	GRCh37	19	11031530	11031530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2145	253	885	0	ENST00000327064.4:c.1445C>T	p.Ser482Leu	p.S482L	ENST00000327064	NM_199141.1	482	tCa/tTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928073	178928074	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0018661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	14996	606	3	ENST00000263967.3:c.1351_1352delinsAA	p.Gly451Lys	p.G451K	ENST00000263967	NM_006218.2	451	GGa/AAa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486087	8486087	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1205	137	609	0	ENST00000356435.5:c.2730G>T	p.Glu910Asp	p.E910D	ENST00000356435		910	gaG/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1127	120	682	0	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0018672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	37	432	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	109	481	0	ENST00000269305.4:c.706T>G	p.Tyr236Asp	p.Y236D	ENST00000269305	NM_001126112.2	236	Tac/Gac																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112767384	112767384	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	95	396	0	ENST00000369452.4:c.1258del	p.Asp420MetfsTer18	p.D420Mfs*18	ENST00000369452	NM_007373.3	419	gaG/ga																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732482	74732482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	184	136	0	ENST00000359995.5:c.427C>T	p.Arg143Cys	p.R143C	ENST00000359995	NM_001195427.1	143	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	21	675	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	57	337	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	21	566	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	124	629	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	29	514	2	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	53	589	2	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																															
SMO	6608	MSKCC	GRCh37	7	128845623	128845623	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs201012381		P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	40	251	0	ENST00000249373.3:c.920C>T	p.Thr307Ile	p.T307I	ENST00000249373	NM_005631.4	307	aCc/aTc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255882	16255883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	48	453	2	ENST00000375759.3:c.3154dup	p.Ile1052AsnfsTer7	p.I1052Nfs*7	ENST00000375759	NM_015001.2	1049	-/A																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	53	702	1	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257254	16257254	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	139	647	2	ENST00000375759.3:c.4522del	p.Met1508TrpfsTer39	p.M1508Wfs*39	ENST00000375759	NM_015001.2	1507	Aaa/aa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013737	12013738	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	27	415	0	ENST00000353533.5:c.681_682del	p.His227GlnfsTer17	p.H227Qfs*17	ENST00000353533	NM_003010.3	227	CAc/c																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248737	212248737	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	20	305	0	ENST00000342788.4:c.3530delA	p.Asn1177MetfsTer27	p.N1177Mfs*27	ENST00000342788	NM_005235.2	1177	aAt/at																																																																															
SRC	6714	MSKCC	GRCh37	20	36024634	36024634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	181	816	1	ENST00000358208.4:c.623G>A	p.Arg208His	p.R208H	ENST00000358208		208	cGc/cAc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37042545	37042545	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	49	417	1	ENST00000231790.2:c.306+1G>A		p.X102_splice	ENST00000231790	NM_000249.3	102																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151849901	151849901	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	72	385	1	ENST00000262189.6:c.12415C>T	p.Arg4139Ter	p.R4139*	ENST00000262189	NM_170606.2	4139	Cga/Tga																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101895016	101895016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	20	241	0	ENST00000374994.4:c.569G>A	p.Gly190Asp	p.G190D	ENST00000374994	NM_004612.2	190	gGc/gAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399216	139399216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	59	621	0	ENST00000277541.6:c.4927G>A	p.Ala1643Thr	p.A1643T	ENST00000277541	NM_017617.3	1643	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	45	609	0	ENST00000269305.4:c.380C>A	p.Ser127Tyr	p.S127Y	ENST00000269305	NM_001126112.2	127	tCc/tAc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79950724	79950725	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCGCAGCGC			P-0018682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	10	133	2	ENST00000265081.6:c.181_189dup	p.Ala61_Pro63dup	p.A61_P63dup	ENST00000265081	NM_002439.4	61	gcc/gCCGCAGCGCcc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557699	21557699	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	25	487	1	ENST00000382592.4:c.2146G>T	p.Glu716Ter	p.E716*	ENST00000382592	NM_014572.2	716	Gag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151871223	151871223	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	13	380	0	ENST00000262189.6:c.9367A>T	p.Met3123Leu	p.M3123L	ENST00000262189	NM_170606.2	3123	Atg/Ttg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0018684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	75	517	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
KDR	3791	MSKCC	GRCh37	4	55980345	55980345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	61	482	0	ENST00000263923.4:c.746G>T	p.Arg249Ile	p.R249I	ENST00000263923	NM_002253.2	249	aGa/aTa																																																																															
RHOA	387	MSKCC	GRCh37	3	49405902	49405909	+	frameshift_variant	Frame_Shift_Del	DEL	ACATCGGT	ACATCGGT	-			P-0018684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	50	521	0	ENST00000418115.1:c.229_236del	p.Thr77TyrfsTer11	p.T77Yfs*11	ENST00000418115	NM_001664.2	77	ACCGATGTt/t																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434682	110434682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	269	676	4	ENST00000375856.3:c.3719G>A	p.Arg1240His	p.R1240H	ENST00000375856	NM_003749.2	1240	cGc/cAc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575484	64575484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	275	544	0	ENST00000337652.1:c.548C>G	p.Ser183Cys	p.S183C	ENST00000337652	NM_130803.2	183	tCt/tGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115853	8115854	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0018685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	252	573	0	ENST00000346208.3:c.1200_1201del	p.Met400IlefsTer106	p.M400Ifs*106	ENST00000346208		400	aTG/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0018686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	270	611	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112162804	112162804	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0018686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	68	282	0	ENST00000257430.4:c.1409-1G>A		p.X470_splice	ENST00000257430	NM_000038.5	470																																																																																
APC	324	MSKCC	GRCh37	5	112151291	112151291	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	95	226	0	ENST00000257430.4:c.933+1G>A		p.X311_splice	ENST00000257430	NM_000038.5	311																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971020	21971021	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0018686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	177	388	0	ENST00000304494.5:c.337_338del	p.Leu113AlafsTer6	p.L113Afs*6	ENST00000304494	NM_000077.4	113	CTg/g																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258943	16258944	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1322	182	853	0	ENST00000375759.3:c.6215dup	p.Asn2072LysfsTer51	p.N2072Kfs*51	ENST00000375759	NM_015001.2	2070	gaa/gAaa																																																																															
NUF2	83540	MSKCC	GRCh37	1	163325188	163325188	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	70	504	0	ENST00000271452.3:c.1324G>T	p.Glu442Ter	p.E442*	ENST00000271452	NM_145697.2	442	Gag/Tag																																																																															
TET1	80312	MSKCC	GRCh37	10	70332801	70332801	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	151	615	0	ENST00000373644.4:c.706A>G	p.Thr236Ala	p.T236A	ENST00000373644	NM_030625.2	236	Acc/Gcc																																																																															
RB1	5925	MSKCC	GRCh37	13	49047519	49047519	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	76	305	0	ENST00000267163.4:c.2513C>G	p.Ser838Ter	p.S838*	ENST00000267163	NM_000321.2	838	tCa/tGa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355766	73355766	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	115	460	0	ENST00000377767.4:c.205G>T	p.Asp69Tyr	p.D69Y	ENST00000377767	NM_014953.3	69	Gac/Tac																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609522	81609522	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	86	426	0	ENST00000298171.2:c.1120C>A	p.Gln374Lys	p.Q374K	ENST00000298171	NM_000369.2	374	Cag/Aag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3832871	3832871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	190	405	1	ENST00000262367.5:c.1387G>A	p.Gly463Arg	p.G463R	ENST00000262367	NM_004380.2	463	Ggg/Agg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993922	72993922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	86	508	0	ENST00000268489.5:c.123G>T	p.Gln41His	p.Q41H	ENST00000268489	NM_006885.3	41	caG/caT																																																																															
NF1	4763	MSKCC	GRCh37	17	29550507	29550516	+	frameshift_variant	Frame_Shift_Del	DEL	AATGCTTAGT	AATGCTTAGT	-			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	165	412	0	ENST00000358273.4:c.1768_1777del	p.Met590AlafsTer12	p.M590Afs*12	ENST00000358273	NM_001042492.2	589	caAATGCTTAGT/ca																																																																															
MALT1	10892	MSKCC	GRCh37	18	56414677	56414677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	72	325	0	ENST00000348428.3:c.2078C>T	p.Ser693Leu	p.S693L	ENST00000348428	NM_006785.3	693	tCa/tTa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214056	36214056	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	193	705	0	ENST00000222270.7:c.2882T>C	p.Met961Thr	p.M961T	ENST00000222270	NM_014727.1	961	aTg/aCg																																																																															
AXL	558	MSKCC	GRCh37	19	41749586	41749586	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	117	669	1	ENST00000301178.4:c.1511A>G	p.Tyr504Cys	p.Y504C	ENST00000301178	NM_021913.4	504	tAc/tGc																																																																															
BCL6	604	MSKCC	GRCh37	3	187447165	187447165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	91	472	0	ENST00000232014.4:c.1028C>T	p.Ser343Leu	p.S343L	ENST00000232014	NM_001130845.1	343	tCg/tTg																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99809059	99809059	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	86	440	0	ENST00000280892.6:c.326G>C	p.Cys109Ser	p.C109S	ENST00000280892	NM_001130678.1	109	tGt/tCt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638344	176638344	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	153	699	3	ENST00000439151.2:c.2944G>T	p.Gly982Trp	p.G982W	ENST00000439151	NM_022455.4	982	Ggg/Tgg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069121	5069121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	86	529	0	ENST00000381652.3:c.1426G>T	p.Asp476Tyr	p.D476Y	ENST00000381652	NM_004972.3	476	Gat/Tat																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1331451	1331451	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	100	665	1	ENST00000381566.1:c.77C>A	p.Ala26Glu	p.A26E	ENST00000381566		26	gCa/gAa																																																																															
ARAF	369	MSKCC	GRCh37	X	47424658	47424658	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	104	579	0	ENST00000377045.4:c.466C>A	p.His156Asn	p.H156N	ENST00000377045	NM_001654.4	156	Cac/Aac																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123480539	123480539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	55	424	0	ENST00000371139.4:c.47G>T	p.Gly16Val	p.G16V	ENST00000371139	NM_001114937.2	16	gGc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	305	390	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0018690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	146	636	6	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	206	414	3	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2131772	2131772	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	100	625	1	ENST00000219476.3:c.3787C>G	p.Pro1263Ala	p.P1263A	ENST00000219476	NM_000548.3	1263	Ccc/Gcc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26022347	26022347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	86	535	0	ENST00000435504.4:c.310G>A	p.Gly104Ser	p.G104S	ENST00000435504		104	Ggt/Agt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	263	568	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087936	27087936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	122	591	2	ENST00000324856.7:c.2223G>T	p.Met741Ile	p.M741I	ENST00000324856	NM_006015.4	741	atG/atT																																																																															
FH	2271	MSKCC	GRCh37	1	241667504	241667504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	80	294	0	ENST00000366560.3:c.946G>A	p.Ala316Thr	p.A316T	ENST00000366560	NM_000143.3	316	Gct/Act																																																																															
ATM	472	MSKCC	GRCh37	11	108141839	108141839	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	97	459	0	ENST00000278616.4:c.2887A>G	p.Met963Val	p.M963V	ENST00000278616	NM_000051.3	963	Atg/Gtg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351048	89351054	+	frameshift_variant	Frame_Shift_Del	DEL	TGTTTTA	TGTTTTA	-			P-0018692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	74	577	0	ENST00000301030.4:c.1896_1902del	p.His632GlnfsTer19	p.H632Qfs*19	ENST00000301030	NM_001256183.1	632	caTAAAACA/ca																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7989414	7989414	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	62	597	1	ENST00000319144.4:c.272C>A	p.Ala91Asp	p.A91D	ENST00000319144	NM_001139.2	91	gCc/gAc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287239	33287239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	66	455	0	ENST00000374542.5:c.1858C>T	p.His620Tyr	p.H620Y	ENST00000374542	NM_001141970.1	620	Cac/Tac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034479	47034479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	45	582	0	ENST00000329236.7:c.333G>C	p.Met111Ile	p.M111I	ENST00000329236	NM_001204466.1	111	atG/atC																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	154	663	1	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724560	162724560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	29	411	0	ENST00000367921.3:c.332G>A	p.Gly111Asp	p.G111D	ENST00000367921	NM_006182.2	111	gGc/gAc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178095680	178095680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	39	348	0	ENST00000397062.3:c.1651C>T	p.His551Tyr	p.H551Y	ENST00000397062	NM_006164.4	551	Cac/Tac																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851815	134851815	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	51	631	0	ENST00000398015.3:c.1221G>T	p.Gln407His	p.Q407H	ENST00000398015	NM_004441.4	407	caG/caT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106097	27106097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	23	436	2	ENST00000324856.7:c.5708C>T	p.Pro1903Leu	p.P1903L	ENST00000324856	NM_006015.4	1903	cCa/cTa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36941167	36941167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	20	453	1	ENST00000361632.4:c.172G>A	p.Glu58Lys	p.E58K	ENST00000361632		58	Gag/Aag																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400918	72400918	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	33	465	1	ENST00000357731.5:c.253T>A	p.Trp85Arg	p.W85R	ENST00000357731	NM_173808.2	85	Tgg/Agg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844801	156844801	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	22	441	0	ENST00000524377.1:c.1354+1G>T		p.X452_splice	ENST00000524377	NM_002529.3	452																																																																																
SMYD3	64754	MSKCC	GRCh37	1	246490507	246490507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	25	430	0	ENST00000388985.4:c.527C>T	p.Ala176Val	p.A176V	ENST00000388985		176	gCa/gTa																																																																															
TET1	80312	MSKCC	GRCh37	10	70406258	70406258	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	52	653	1	ENST00000373644.4:c.3772G>T	p.Glu1258Ter	p.E1258*	ENST00000373644	NM_030625.2	1258	Gaa/Taa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624290	89624290	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	175	470	2	ENST00000371953.3:c.64G>T	p.Asp22Tyr	p.D22Y	ENST00000371953	NM_000314.4	22	Gac/Tac																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123324988	123324988	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	40	466	0	ENST00000358487.5:c.340G>T	p.Asp114Tyr	p.D114Y	ENST00000358487	NM_000141.4	114	Gac/Tac																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64132784	64132784	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	194	470	0	ENST00000334205.4:c.918G>T	p.Trp306Cys	p.W306C	ENST00000334205	NM_003942.2	306	tgG/tgT																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514085	69514085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	288	566	0	ENST00000294312.3:c.596C>A	p.Pro199Gln	p.P199Q	ENST00000294312	NM_005117.2	199	cCa/cAa																																																																															
ATM	472	MSKCC	GRCh37	11	108170456	108170456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	98	351	0	ENST00000278616.4:c.5021G>T	p.Cys1674Phe	p.C1674F	ENST00000278616	NM_000051.3	1674	tGc/tTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374117	118374117	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	213	430	0	ENST00000534358.1:c.7510C>G	p.Pro2504Ala	p.P2504A	ENST00000534358	NM_005933.3	2504	Cca/Gca																																																																															
CBL	867	MSKCC	GRCh37	11	119142480	119142480	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	175	587	0	ENST00000264033.4:c.479A>T	p.His160Leu	p.H160L	ENST00000264033	NM_005188.3	160	cAc/cTc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022368	12022368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	297	659	3	ENST00000396373.4:c.475del	p.Gln159ArgfsTer50	p.Q159Rfs*50	ENST00000396373	NM_001987.4	158	gtC/gt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18524114	18524114	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	11	239	1	ENST00000266497.5:c.1626G>T	p.Arg542Ser	p.R542S	ENST00000266497		542	agG/agT																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644567	21644567	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	80	487	0	ENST00000421138.2:c.100G>T	p.Glu34Ter	p.E34*	ENST00000421138		34	Gag/Tag																																																																															
MSI1	4440	MSKCC	GRCh37	12	120785255	120785255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	87	472	0	ENST00000257552.2:c.853G>T	p.Gly285Trp	p.G285W	ENST00000257552	NM_002442.3	285	Ggg/Tgg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21619822	21619822	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	34	230	0	ENST00000382592.4:c.342+2T>A		p.X114_splice	ENST00000382592	NM_014572.2	114																																																																																
FLT1	2321	MSKCC	GRCh37	13	29008359	29008359	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	11	179	0	ENST00000282397.4:c.514-2A>T		p.X172_splice	ENST00000282397	NM_002019.4	172																																																																																
BRCA2	675	MSKCC	GRCh37	13	32929017	32929017	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	16	580	4	ENST00000380152.3:c.7027G>T	p.Glu2343Ter	p.E2343*	ENST00000380152		2343	Gag/Tag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068985	30068985	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	26	668	0	ENST00000331968.5:c.1944G>T	p.Met648Ile	p.M648I	ENST00000331968	NM_002742.2	648	atG/atT																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135354	30135354	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	53	526	0	ENST00000331968.5:c.464G>C	p.Arg155Thr	p.R155T	ENST00000331968	NM_002742.2	155	aGa/aCa																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988498	36988498	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	105	705	0	ENST00000354822.5:c.155A>C	p.Glu52Ala	p.E52A	ENST00000354822	NM_001079668.2	52	gAa/gCa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95590564	95590564	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	31	415	0	ENST00000343455.3:c.1345G>T	p.Glu449Ter	p.E449*	ENST00000343455	NM_177438.2	449	Gaa/Taa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678594	88678594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	26	301	0	ENST00000360948.2:c.942G>T	p.Glu314Asp	p.E314D	ENST00000360948	NM_001012338.2	314	gaG/gaT																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679770	88679770	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	21	471	2	ENST00000360948.2:c.693C>A	p.Cys231Ter	p.C231*	ENST00000360948	NM_001012338.2	231	tgC/tgA																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680764	88680764	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	53	586	0	ENST00000360948.2:c.493A>T	p.Ser165Cys	p.S165C	ENST00000360948	NM_001012338.2	165	Agc/Tgc																																																																															
BLM	641	MSKCC	GRCh37	15	91292788	91292788	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	38	563	1	ENST00000355112.3:c.290A>T	p.Gln97Leu	p.Q97L	ENST00000355112	NM_000057.2	97	cAg/cTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3828059	3828059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	72	530	0	ENST00000262367.5:c.2066G>T	p.Gly689Val	p.G689V	ENST00000262367	NM_004380.2	689	gGg/gTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858433	9858433	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	22	361	0	ENST00000330684.3:c.2968G>T	p.Glu990Ter	p.E990*	ENST00000330684	NM_001134407.1	990	Gag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993588	72993588	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	80	441	0	ENST00000268489.5:c.457G>T	p.Gly153Cys	p.G153C	ENST00000268489	NM_006885.3	153	Ggc/Tgc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59770869	59770869	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199831248		P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	21	469	0	ENST00000259008.2:c.2497A>G	p.Ile833Val	p.I833V	ENST00000259008	NM_032043.2	833	Att/Gtt																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73775034	73775034	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	50	334	0	ENST00000254810.4:c.139G>T	p.Val47Leu	p.V47L	ENST00000254810	NM_005324.3	47	Gtg/Ttg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78914380	78914380	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	53	482	1	ENST00000306801.3:c.3004G>T	p.Ala1002Ser	p.A1002S	ENST00000306801	NM_020761.2	1002	Gcc/Tcc																																																																															
YES1	7525	MSKCC	GRCh37	18	756587	756587	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	80	539	0	ENST00000314574.4:c.241G>T	p.Val81Leu	p.V81L	ENST00000314574	NM_005433.3	81	Gtg/Ttg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39629506	39629506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	31	461	1	ENST00000262039.4:c.2200G>T	p.Val734Leu	p.V734L	ENST00000262039	NM_002647.2	734	Gtg/Ttg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291956	15291956	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	72	647	0	ENST00000263388.2:c.2810G>T	p.Gly937Val	p.G937V	ENST00000263388	NM_000435.2	937	gGg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213348	36213348	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	38	654	1	ENST00000222270.7:c.2545G>T	p.Val849Leu	p.V849L	ENST00000222270	NM_014727.1	849	Gtg/Ttg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918141	50918141	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	46	675	1	ENST00000440232.2:c.2458G>T	p.Ala820Ser	p.A820S	ENST00000440232	NM_002691.3	820	Gcc/Tcc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470534	25470534	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	72	653	0	ENST00000264709.3:c.940T>G	p.Trp314Gly	p.W314G	ENST00000264709	NM_175629.2	314	Tgg/Ggg																																																																															
ALK	238	MSKCC	GRCh37	2	29497991	29497991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	15	422	0	ENST00000389048.3:c.2015G>T	p.Arg672Ile	p.R672I	ENST00000389048	NM_004304.4	672	aGa/aTa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213383	39213383	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	35	539	0	ENST00000402219.2:c.3584G>T	p.Arg1195Leu	p.R1195L	ENST00000402219	NM_005633.3	1195	cGa/cTa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630442	47630442	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	45	533	0	ENST00000233146.2:c.112G>C	p.Asp38His	p.D38H	ENST00000233146	NM_000251.2	38	Gac/Cac																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116253	209116253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	32	449	0	ENST00000345146.2:c.23G>T	p.Gly8Val	p.G8V	ENST00000345146	NM_005896.2	8	gGt/gTt																																																																															
BARD1	580	MSKCC	GRCh37	2	215593633	215593633	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	14	326	0	ENST00000260947.4:c.2101C>T	p.Gln701Ter	p.Q701*	ENST00000260947	NM_000465.2	701	Cag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790012	40790012	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	55	369	1	ENST00000373198.4:c.2719G>T	p.Gly907Trp	p.G907W	ENST00000373198	NM_133170.3	907	Ggg/Tgg																																																																															
NF2	4771	MSKCC	GRCh37	22	30000075	30000075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	142	519	2	ENST00000338641.4:c.88G>A	p.Asp30Asn	p.D30N	ENST00000338641	NM_000268.3	30	Gac/Aac																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413743	138413743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	29	372	0	ENST00000289153.2:c.1777G>A	p.Ala593Thr	p.A593T	ENST00000289153	NM_006219.2	593	Gcg/Acg																																																																															
TP63	8626	MSKCC	GRCh37	3	189584506	189584506	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	49	412	0	ENST00000264731.3:c.802G>T	p.Glu268Ter	p.E268*	ENST00000264731	NM_003722.4	268	Gag/Tag																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902396	1902396	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	21	502	0	ENST00000382891.5:c.15C>G	p.Ile5Met	p.I5M	ENST00000382891	NM_133335.3	5	atC/atG																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133459	55133459	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	19	473	0	ENST00000257290.5:c.763G>C	p.Gly255Arg	p.G255R	ENST00000257290	NM_006206.4	255	Ggc/Cgc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55161422	55161422	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	28	429	0	ENST00000257290.5:c.3253G>T	p.Glu1085Ter	p.E1085*	ENST00000257290	NM_006206.4	1085	Gaa/Taa																																																																															
KIT	3815	MSKCC	GRCh37	4	55561894	55561894	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	24	284	0	ENST00000288135.5:c.284A>G	p.Tyr95Cys	p.Y95C	ENST00000288135	NM_000222.2	95	tAc/tGc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521440	187521440	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	48	393	0	ENST00000441802.2:c.11715G>T	p.Gln3905His	p.Q3905H	ENST00000441802	NM_005245.3	3905	caG/caT																																																																															
SDHA	6389	MSKCC	GRCh37	5	235339	235339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	52	585	2	ENST00000264932.6:c.1145G>T	p.Gly382Val	p.G382V	ENST00000264932	NM_004168.2	382	gGc/gTc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754277	57754277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	22	436	1	ENST00000274289.3:c.574G>A	p.Gly192Arg	p.G192R	ENST00000274289	NM_006622.3	192	Gga/Aga																																																																															
NPM1	4869	MSKCC	GRCh37	5	170834711	170834711	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	53	370	0	ENST00000296930.5:c.779C>G	p.Ser260Cys	p.S260C	ENST00000296930	NM_002520.6	260	tCt/tGt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518737	176518737	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	241	581	0	ENST00000292408.4:c.655C>A	p.Arg219Ser	p.R219S	ENST00000292408	NM_213647.1	219	Cgc/Agc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180039516	180039516	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	185	699	0	ENST00000261937.6:c.3527G>C	p.Arg1176Thr	p.R1176T	ENST00000261937	NM_182925.4	1176	aGg/aCg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528372	157528373	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	74	494	2	ENST00000346085.5:c.6097_6098delinsTT	p.Gly2033Leu	p.G2033L	ENST00000346085	NM_020732.3	2033	GGg/TTg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444338	50444338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	91	251	0	ENST00000331340.3:c.268G>A	p.Glu90Lys	p.E90K	ENST00000331340	NM_006060.4	90	Gag/Aag																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459468	50459468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	62	343	0	ENST00000331340.3:c.757C>A	p.Leu253Met	p.L253M	ENST00000331340	NM_006060.4	253	Ctg/Atg																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346277	152346277	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	17	498	0	ENST00000359321.1:c.293A>G	p.His98Arg	p.H98R	ENST00000359321	NM_005431.1	98	cAc/cGc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372233	55372233	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	56	366	0	ENST00000297316.4:c.923G>C	p.Gly308Ala	p.G308A	ENST00000297316	NM_022454.3	308	gGg/gCg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376672	8376672	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	23	514	0	ENST00000356435.5:c.4441C>T	p.Gln1481Ter	p.Q1481*	ENST00000356435		1481	Caa/Taa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971110	21971110	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	37	386	0	ENST00000304494.5:c.248A>T	p.His83Leu	p.H83L	ENST00000304494	NM_000077.4	83	cAc/cTc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98238339	98238339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	19	282	0	ENST00000331920.6:c.1705G>T	p.Ala569Ser	p.A569S	ENST00000331920	NM_000264.3	569	Gct/Tct																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045696	47045697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	81	313	0	ENST00000329236.7:c.2344_2345dup	p.Asn782LysfsTer27	p.N782Kfs*27	ENST00000329236	NM_001204466.1	781	-/AA																																																																															
BTK	695	MSKCC	GRCh37	X	100614281	100614281	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	64	231	0	ENST00000308731.7:c.894G>C	p.Glu298Asp	p.E298D	ENST00000308731	NM_000061.2	298	gaG/gaC																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123499609	123499609	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	29	248	0	ENST00000371139.4:c.138-2A>T		p.X46_splice	ENST00000371139	NM_001114937.2	46																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0018698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	101	488	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604653	48604653	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	21	230	0	ENST00000342988.3:c.1475T>G	p.Val492Gly	p.V492G	ENST00000342988	NM_005359.5	492	gTt/gGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579557	7579557	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	79	477	0	ENST00000269305.4:c.130del	p.Met44CysfsTer79	p.M44Cfs*79	ENST00000269305	NM_001126112.2	44	Atg/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	241	463	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	205	570	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	204	431	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877349	40877349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	139	358	0	ENST00000373198.4:c.2347G>A	p.Val783Met	p.V783M	ENST00000373198	NM_133170.3	783	Gtg/Atg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643348	52643348	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	203	541	1	ENST00000394830.3:c.2548C>T	p.Arg850Ter	p.R850*	ENST00000394830	NM_018313.4	850	Cga/Tga																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001317	150001317	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	185	641	0	ENST00000253339.5:c.2287G>T	p.Glu763Ter	p.E763*	ENST00000253339		763	Gaa/Taa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090491	5090491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	80	478	0	ENST00000381652.3:c.2807G>A	p.Ser936Asn	p.S936N	ENST00000381652	NM_004972.3	936	aGt/aAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0018708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	19	546	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	19	379	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272302	15272302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	22	584	1	ENST00000263388.2:c.6137C>T	p.Pro2046Leu	p.P2046L	ENST00000263388	NM_000435.2	2046	cCa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0018711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	526	621	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103528078	103528078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	131	324	1	ENST00000355739.4:c.3386C>T	p.Ser1129Leu	p.S1129L	ENST00000355739	NM_000123.3	1129	tCg/tTg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354324	354324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200716081		P-0018711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	196	513	1	ENST00000262320.3:c.1234C>T	p.Arg412Trp	p.R412W	ENST00000262320	NM_003502.3	412	Cgg/Tgg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38274856	38274857	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0018711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1096	191	435	0	ENST00000425967.3:c.1723_1724del	p.Ile575HisfsTer111	p.I575Hfs*111	ENST00000425967	NM_001174067.1	575	ATc/c																																																																															
TEK	7010	MSKCC	GRCh37	9	27203000	27203000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1119	188	538	0	ENST00000380036.4:c.2092C>T	p.Gln698Ter	p.Q698*	ENST00000380036	NM_000459.3	698	Cag/Tag																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437912	52437912	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0018713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	182	767	0	ENST00000460680.1:c.1251-2A>T		p.X417_splice	ENST00000460680	NM_004656.3	417																																																																																
MITF	4286	MSKCC	GRCh37	3	69986985	69986985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	244	652	0	ENST00000352241.4:c.367C>T	p.Leu123Phe	p.L123F	ENST00000352241	NM_198159.2	123	Ctc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	194	453	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0018726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	100	460	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	95	401	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654718	67654718	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	96	389	0	ENST00000264010.4:c.1205C>T	p.Ser402Leu	p.S402L	ENST00000264010	NM_006565.3	402	tCa/tTa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177010	56177011	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	96	293	0	ENST00000399503.3:c.2281dup	p.Ile761AsnfsTer3	p.I761Nfs*3	ENST00000399503	NM_005921.1	760	-/A																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177907	56177908	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0018726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	143	414	0	ENST00000399503.3:c.2882_2883dup	p.Pro962AspfsTer7	p.P962Dfs*7	ENST00000399503	NM_005921.1	960	-/AG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0018727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	158	402	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624269	89624269	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	274	274	1	ENST00000371953.3:c.43A>T	p.Arg15Ter	p.R15*	ENST00000371953	NM_000314.4	15	Aga/Tga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554175	63554175	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	183	442	0	ENST00000307078.5:c.564G>T	p.Gln188His	p.Q188H	ENST00000307078	NM_004655.3	188	caG/caT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	159	357	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0018728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	158	324	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
CDH1	999	MSKCC	GRCh37	16	68842748	68842748	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	171	336	0	ENST00000261769.5:c.684C>A	p.Tyr228Ter	p.Y228*	ENST00000261769	NM_004360.3	228	taC/taA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0018752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1129	26	753	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934578		P-0018753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	199	468	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0018753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	204	410	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108115727	108115727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	82	354	0	ENST00000278616.4:c.875C>T	p.Pro292Leu	p.P292L	ENST00000278616	NM_000051.3	292	cCg/cTg																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699363	117699363	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	166	486	0	ENST00000369458.3:c.278A>T	p.Gln93Leu	p.Q93L	ENST00000369458	NM_024626.3	93	cAg/cTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117872	70117872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	145	347	0	ENST00000245479.2:c.340G>A	p.Val114Met	p.V114M	ENST00000245479	NM_000346.3	114	Gtg/Atg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198265495	198265495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	124	622	1	ENST00000335508.6:c.2662C>T	p.Leu888Phe	p.L888F	ENST00000335508	NM_012433.2	888	Ctt/Ttt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52584581	52584581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	128	499	0	ENST00000394830.3:c.4432G>T	p.Val1478Phe	p.V1478F	ENST00000394830	NM_018313.4	1478	Gtc/Ttc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117638326	117638326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	89	486	2	ENST00000368508.3:c.6115C>T	p.Arg2039Cys	p.R2039C	ENST00000368508	NM_002944.2	2039	Cgt/Tgt																																																																															
MYC	4609	MSKCC	GRCh37	8	128752729	128752729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	178	289	0	ENST00000377970.2:c.890C>T	p.Pro297Leu	p.P297L	ENST00000377970	NM_002467.4	297	cCt/cTt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619057	37619057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	93	643	0	ENST00000447079.4:c.733G>A	p.Asp245Asn	p.D245N	ENST00000447079	NM_015083.1	245	Gat/Aat																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602748	10602748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	894	655	0	ENST00000171111.5:c.830C>T	p.Thr277Met	p.T277M	ENST00000171111	NM_203500.1	277	aCg/aTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261910	16261910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	185	493	0	ENST00000375759.3:c.9175G>A	p.Ala3059Thr	p.A3059T	ENST00000375759	NM_015001.2	3059	Gct/Act																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982336	201982336	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2294	299	696	1	ENST00000359651.3:c.715G>T	p.Asp239Tyr	p.D239Y	ENST00000359651		239	Gat/Tat																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423505	88423505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	64	539	0	ENST00000360948.2:c.2330C>T	p.Thr777Met	p.T777M	ENST00000360948	NM_001012338.2	777	aCg/aTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3808896	3808896	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	188	541	1	ENST00000262367.5:c.3328C>A	p.Pro1110Thr	p.P1110T	ENST00000262367	NM_004380.2	1110	Cct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7572996	7572996	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	109	331	0	ENST00000269305.4:c.1113del	p.Lys373ArgfsTer49	p.K373Rfs*49	ENST00000269305	NM_001126112.2	371	tcC/tc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11924223	11924225	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	10	9	0	ENST00000353533.5:c.31_33del	p.Gly11del	p.G11del	ENST00000353533	NM_003010.3	7	aGCGgc/agc																																																																															
NF1	4763	MSKCC	GRCh37	17	29667556	29667556	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	189	550	3	ENST00000358273.4:c.6955G>T	p.Ala2319Ser	p.A2319S	ENST00000358273	NM_001042492.2	2319	Gct/Tct																																																																															
STK11	6794	MSKCC	GRCh37	19	1207153	1207153	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	641	759	1	ENST00000326873.7:c.241A>T	p.Lys81Ter	p.K81*	ENST00000326873	NM_000455.4	81	Aag/Tag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251629	212251629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	118	398	1	ENST00000342788.4:c.3430G>A	p.Glu1144Lys	p.E1144K	ENST00000342788	NM_005235.2	1144	Gag/Aag																																																																															
RAC2	5880	MSKCC	GRCh37	22	37622802	37622802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1764	392	693	0	ENST00000249071.6:c.490G>T	p.Gly164Cys	p.G164C	ENST00000249071	NM_002872.4	164	Ggc/Tgc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806194	1806194	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2046	421	735	0	ENST00000260795.2:c.1213G>C	p.Gly405Arg	p.G405R	ENST00000260795		405	Ggc/Cgc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143094936	143094936	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	33	434	0	ENST00000262992.4:c.1208C>A	p.Ser403Ter	p.S403*	ENST00000262992	NM_001101669.1	403	tCa/tAa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521851	157521851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	163	422	0	ENST00000346085.5:c.4123C>T	p.His1375Tyr	p.H1375Y	ENST00000346085	NM_020732.3	1375	Cat/Tat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945627	151945627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	20	518	0	ENST00000262189.6:c.1892C>T	p.Ser631Phe	p.S631F	ENST00000262189	NM_170606.2	631	tCt/tTt																																																																															
ATRX	546	MSKCC	GRCh37	X	76907816	76907816	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	13	190	0	ENST00000373344.5:c.4345A>G	p.Lys1449Glu	p.K1449E	ENST00000373344	NM_000489.3	1449	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0018760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	68	502	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0018760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	33	281	2	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577579	7577579	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0018760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	159	590	0	ENST00000269305.4:c.702C>G	p.Tyr234Ter	p.Y234*	ENST00000269305	NM_001126112.2	234	taC/taG																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223237	5223237	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	102	666	1	ENST00000357368.4:c.2566G>T	p.Ala856Ser	p.A856S	ENST00000357368	NM_002850.3	856	Gct/Tct																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212587165	212587165	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	18	454	0	ENST00000342788.4:c.836T>G	p.Phe279Cys	p.F279C	ENST00000342788	NM_005235.2	279	tTc/tGc																																																																															
WT1	7490	MSKCC	GRCh37	11	32439195	32439195	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	46	562	0	ENST00000332351.3:c.878A>G	p.Asn293Ser	p.N293S	ENST00000332351	NM_024426.4	293	aAt/aGt																																																																															
ATM	472	MSKCC	GRCh37	11	108117756	108117756	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	65	410	0	ENST00000278616.4:c.967A>G	p.Ile323Val	p.I323V	ENST00000278616	NM_000051.3	323	Ata/Gta																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061521	38061538	+	inframe_deletion	In_Frame_Del	DEL	GCCGCCGCCCGCGCGGCT	GCCGCCGCCCGCGCGGCT	-			P-0018779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	11	209	0	ENST00000250448.2:c.451_468del	p.Ser151_Gly156del	p.S151_G156del	ENST00000250448	NM_004496.3	151	AGCCGCGCGGGCGGCGGC/-																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39550380	39550380	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	89	515	0	ENST00000262039.4:c.491G>C	p.Ser164Thr	p.S164T	ENST00000262039	NM_002647.2	164	aGt/aCt																																																																															
ABL1	25	MSKCC	GRCh37	9	133760358	133760358	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064160		P-0018779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	92	714	1	ENST00000318560.5:c.2681G>A	p.Arg894Lys	p.R894K	ENST00000318560	NM_005157.4	894	aGg/aAg																																																																															
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	89	679	6	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	655	876	0	ENST00000269305.4:c.646G>C	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ctg																																																																															
MAX	4149	MSKCC	GRCh37	14	65560514	65560514	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	424	367	0	ENST00000358664.4:c.83A>G	p.His28Arg	p.H28R	ENST00000358664	NM_002382.4	28	cAt/cGt																																																																															
RB1	5925	MSKCC	GRCh37	13	48941645	48941645	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	120	315	0	ENST00000267163.4:c.955A>T	p.Lys319Ter	p.K319*	ENST00000267163	NM_000321.2	319	Aaa/Taa																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200029	128200029	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	373	695	0	ENST00000341105.2:c.1276T>G	p.Ser426Ala	p.S426A	ENST00000341105	NM_032638.4	426	Tcc/Gcc																																																																															
KDR	3791	MSKCC	GRCh37	4	55979482	55979482	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	167	462	0	ENST00000263923.4:c.965T>G	p.Val322Gly	p.V322G	ENST00000263923	NM_002253.2	322	gTc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578497	7578498	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	416	924	0	ENST00000269305.4:c.432dup	p.Leu145AlafsTer4	p.L145Afs*4	ENST00000269305	NM_001126112.2	144	-/G																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94068006	94068006	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	82	378	3	ENST00000369303.4:c.956C>A	p.Ala319Asp	p.A319D	ENST00000369303	NM_004440.3	319	gCt/gAt																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750398	41750398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	54	296	0	ENST00000226382.2:c.230C>T	p.Pro77Leu	p.P77L	ENST00000226382	NM_003924.3	77	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578451	7578451	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	187	703	2	ENST00000269305.4:c.479T>A	p.Met160Lys	p.M160K	ENST00000269305	NM_001126112.2	160	aTg/aAg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949985	44949985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	63	226	0	ENST00000377967.4:c.3754G>A	p.Ala1252Thr	p.A1252T	ENST00000377967	NM_021140.2	1252	Gca/Aca																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	197	858	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
AKT1	207	MSKCC	GRCh37	14	105239617	105239617	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	64	701	0	ENST00000349310.3:c.928del	p.Cys310AlafsTer33	p.C310Afs*33	ENST00000349310	NM_001014432.1	310	Tgc/gc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873929	151873929	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	120	501	0	ENST00000262189.6:c.8609del	p.Leu2870CysfsTer36	p.L2870Cfs*36	ENST00000262189	NM_170606.2	2870	tTg/tg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	157	641	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0018818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	84	440	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913385		P-0018818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	121	399	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0018818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	180	703	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48581286	48581286	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	167	669	0	ENST00000342988.3:c.593del	p.Pro198GlnfsTer4	p.P198Qfs*4	ENST00000342988	NM_005359.5	197	aCc/ac																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264200	46264200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	74	286	0	ENST00000371998.3:c.1247C>T	p.Ala416Val	p.A416V	ENST00000371998		416	gCc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	432	796	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	302	635	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115276409	115276409	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	327	665	0	ENST00000438362.2:c.919G>T	p.Glu307Ter	p.E307*	ENST00000438362	NM_001242891.1	307	Gaa/Taa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18656246	18656247	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	341	660	1	ENST00000266497.5:c.2925_2926delinsAG	p.Leu976Val	p.L976V	ENST00000266497		975	acCCta/acAGta																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244889	46244889	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	237	839	1	ENST00000334344.6:c.2983C>T	p.Gln995Ter	p.Q995*	ENST00000334344	NM_152641.2	995	Caa/Taa																																																																															
POLE	5426	MSKCC	GRCh37	12	133210904	133210904	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	389	904	1	ENST00000320574.5:c.5872G>T	p.Glu1958Ter	p.E1958*	ENST00000320574	NM_006231.2	1958	Gaa/Taa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434717	110434717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	369	811	0	ENST00000375856.3:c.3684G>T	p.Leu1228Phe	p.L1228F	ENST00000375856	NM_003749.2	1228	ttG/ttT																																																																															
NF1	4763	MSKCC	GRCh37	17	29667637	29667637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	337	692	0	ENST00000358273.4:c.7036G>T	p.Asp2346Tyr	p.D2346Y	ENST00000358273	NM_001042492.2	2346	Gat/Tat																																																																															
EP300	2033	MSKCC	GRCh37	22	41562627	41562627	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	384	656	0	ENST00000263253.7:c.3831G>T	p.Lys1277Asn	p.K1277N	ENST00000263253	NM_001429.3	1277	aaG/aaT																																																																															
PPARG	5468	MSKCC	GRCh37	3	12422897	12422897	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	205	807	0	ENST00000287820.6:c.387G>T	p.Glu129Asp	p.E129D	ENST00000287820	NM_015869.4	129	gaG/gaT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270108	66270108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	302	682	1	ENST00000273854.3:c.1774G>T	p.Val592Phe	p.V592F	ENST00000273854	NM_004439.5	592	Gtc/Ttc																																																																															
APC	324	MSKCC	GRCh37	5	112162862	112162862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	319	651	0	ENST00000257430.4:c.1466C>T	p.Thr489Ile	p.T489I	ENST00000257430	NM_000038.5	489	aCt/aTt																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5557645	5557645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	165	718	0	ENST00000397747.3:c.659C>T	p.Thr220Ile	p.T220I	ENST00000397747	NM_025239.3	220	aCt/aTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380276	+	missense_variant	Missense_Mutation	DNP	TT	TT	CA			P-0018822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	139	641	1	ENST00000256078.4:c.182_183delAAinsTG	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAA/cTG																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645138	67645138	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	169	607	1	ENST00000264010.4:c.403C>T	p.Gln135Ter	p.Q135*	ENST00000264010	NM_006565.3	135	Cag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256783	16256783	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	132	515	0	ENST00000375759.3:c.4048A>G	p.Arg1350Gly	p.R1350G	ENST00000375759	NM_015001.2	1350	Aga/Gga																																																																															
ATM	472	MSKCC	GRCh37	11	108225566	108225566	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	89	495	0	ENST00000278616.4:c.8815A>G	p.Arg2939Gly	p.R2939G	ENST00000278616	NM_000051.3	2939	Aga/Gga																																																																															
STK11	6794	MSKCC	GRCh37	19	1219341	1219341	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0018822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	270	626	0	ENST00000326873.7:c.393C>G	p.Tyr131Ter	p.Y131*	ENST00000326873	NM_000455.4	131	taC/taG																																																																															
BCL6	604	MSKCC	GRCh37	3	187447006	187447006	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	112	513	0	ENST00000232014.4:c.1187A>C	p.Glu396Ala	p.E396A	ENST00000232014	NM_001130845.1	396	gAg/gCg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128434631	128434631	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	138	587	0	ENST00000265960.3:c.223A>G	p.Ser75Gly	p.S75G	ENST00000265960	NM_001006617.1	75	Agt/Ggt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395053	139395053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	79	446	1	ENST00000277541.6:c.5885G>A	p.Arg1962His	p.R1962H	ENST00000277541	NM_017617.3	1962	cGc/cAc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922860	44922872	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGCCATGTTCC	CAGGCCATGTTCC	-			P-0018822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	98	206	0	ENST00000377967.4:c.1722_1734del	p.Gly575ValfsTer14	p.G575Vfs*14	ENST00000377967	NM_021140.2	574	gCAGGCCATGTTCCc/gc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573174	64573174	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	329	519	0	ENST00000337652.1:c.1133C>G	p.Pro378Arg	p.P378R	ENST00000337652	NM_130803.2	378	cCc/cGc																																																																															
ATRX	546	MSKCC	GRCh37	X	76814238	76814238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	244	452	0	ENST00000373344.5:c.6406G>T	p.Asp2136Tyr	p.D2136Y	ENST00000373344	NM_000489.3	2136	Gac/Tac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023568	27023568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	398	792	0	ENST00000324856.7:c.674C>T	p.Pro225Leu	p.P225L	ENST00000324856	NM_006015.4	225	cCc/cTc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456738	32456738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	294	604	0	ENST00000332351.3:c.154C>T	p.Arg52Cys	p.R52C	ENST00000332351	NM_024426.4	52	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0018830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	172	636	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0018830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	417	866	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519816		P-0018830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	2826	670	1	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																															
ATR	545	MSKCC	GRCh37	3	142280136	142280136	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369434236		P-0018830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	66	482	1	ENST00000350721.4:c.1298G>A	p.Arg433His	p.R433H	ENST00000350721	NM_001184.3	433	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0018830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	68	433	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175521	112175521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	132	331	0	ENST00000257430.4:c.4230C>A	p.Cys1410Ter	p.C1410*	ENST00000257430	NM_000038.5	1410	tgC/tgA																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971099	21971099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	207	419	0	ENST00000304494.5:c.259C>T	p.Arg87Trp	p.R87W	ENST00000304494	NM_000077.4	87	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501191		P-0018831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	529	695	3	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0018831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	356	562	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0018831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	267	446	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	187	567	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	528	372	6	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112154991	112154991	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	67	537	3	ENST00000257430.4:c.1262G>A	p.Trp421Ter	p.W421*	ENST00000257430	NM_000038.5	421	tGg/tAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591852	48591852	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	118	345	2	ENST00000342988.3:c.1017del	p.Phe339LeufsTer45	p.F339Lfs*45	ENST00000342988	NM_005359.5	339	Ttt/tt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593494	48593494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	53	246	0	ENST00000342988.3:c.1245C>G	p.Asp415Glu	p.D415E	ENST00000342988	NM_005359.5	415	gaC/gaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	66	433	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																															
EP300	2033	MSKCC	GRCh37	22	41537086	41537086	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	65	381	0	ENST00000263253.7:c.1913A>G	p.Tyr638Cys	p.Y638C	ENST00000263253	NM_001429.3	638	tAt/tGt																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195427	102195427	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	22	260	0	ENST00000263464.3:c.187A>C	p.Lys63Gln	p.K63Q	ENST00000263464	NM_001165.4	63	Aag/Cag																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702235	47702235	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	200	505	1	ENST00000233146.2:c.1831G>T	p.Val611Leu	p.V611L	ENST00000233146	NM_000251.2	611	Gtg/Ttg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971047	21971060	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCGCGCCCCGGC	AGCCGCGCCCCGGC	GGG			P-0018833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	71	434	3	ENST00000304494.5:c.298_311delinsCCC	p.Ala100ProfsTer16	p.A100Pfs*16	ENST00000304494	NM_000077.4	100	GCCGGGGCGCGGCTg/CCCg																																																																															
BTK	695	MSKCC	GRCh37	X	100611108	100611108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	52	283	0	ENST00000308731.7:c.1498G>A	p.Glu500Lys	p.E500K	ENST00000308731	NM_000061.2	500	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	261	322	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	265	225	0	ENST00000257430.4:c.4199del	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903727	114903727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	467	683	0	ENST00000543371.1:c.731C>T	p.Pro244Leu	p.P244L	ENST00000543371	NM_001198531.1	244	cCa/cTa																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473758	67473758	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	290	413	1	ENST00000327367.4:c.838A>T	p.Asn280Tyr	p.N280Y	ENST00000327367	NM_005902.3	280	Aat/Tat																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117912	70117913	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0018837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	208	346	0	ENST00000245479.2:c.380_381del	p.Tyr127SerfsTer124	p.Y127Sfs*124	ENST00000245479	NM_000346.3	127	tAC/t																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781466	135781466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	225	255	0	ENST00000298552.3:c.1499G>A	p.Arg500Gln	p.R500Q	ENST00000298552	NM_001162426.1	500	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	195	585	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115745	8115745	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	236	569	0	ENST00000346208.3:c.1091G>T	p.Arg364Ile	p.R364I	ENST00000346208		364	aGa/aTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845590	151845591	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0018840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	133	504	2	ENST00000262189.6:c.13421_13422delinsTT	p.Cys4474Phe	p.C4474F	ENST00000262189	NM_170606.2	4474	tGC/tTT																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115923	8115923	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	84	590	0	ENST00000346208.3:c.1271del	p.Pro424ArgfsTer51	p.P424Rfs*51	ENST00000346208		423	caC/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	119	690	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199352	16199352	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	45	410	0	ENST00000375759.3:c.125G>C	p.Gly42Ala	p.G42A	ENST00000375759	NM_015001.2	42	gGa/gCa																																																																															
RET	5979	MSKCC	GRCh37	10	43612162	43612162	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	28	247	1	ENST00000355710.3:c.2267C>A	p.Ala756Asp	p.A756D	ENST00000355710	NM_020975.4	756	gCc/gAc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123310923	123310923	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	59	392	0	ENST00000358487.5:c.505G>T	p.Val169Leu	p.V169L	ENST00000358487	NM_000141.4	169	Gtg/Ttg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443731	49443731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	42	665	0	ENST00000301067.7:c.3640G>T	p.Gly1214Cys	p.G1214C	ENST00000301067	NM_003482.3	1214	Ggt/Tgt																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811768	102811768	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	51	591	0	ENST00000307046.8:c.416C>A	p.Ser139Tyr	p.S139Y	ENST00000307046	NM_001111285.1	139	tCt/tAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610436	10610436	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	84	628	0	ENST00000171111.5:c.274C>T	p.Gln92Ter	p.Q92*	ENST00000171111	NM_203500.1	92	Cag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11172459	11172459	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0018845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	98	723	2	ENST00000344626.4:c.4912-1G>T		p.X1638_splice	ENST00000344626	NM_003072.3	1638																																																																																
CTLA4	1493	MSKCC	GRCh37	2	204736158	204736158	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	116	393	0	ENST00000302823.3:c.515C>A	p.Ser172Ter	p.S172*	ENST00000302823	NM_005214.4	172	tCg/tAg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662460	227662460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	56	430	0	ENST00000305123.5:c.995G>T	p.Gly332Val	p.G332V	ENST00000305123	NM_005544.2	332	gGc/gTc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285903	38285905	+	stop_gained	Nonsense_Mutation	ONP	CTG	CTG	ATA			P-0018845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	136	545	1	ENST00000425967.3:c.506_508delinsTAT	p.Ser169_Glu170delinsLeuTer	p.S169_E170delinsL*	ENST00000425967	NM_001174067.1	169	tCAGag/tTATag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0018846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1370	189	801	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
BRAF	673	MSKCC	GRCh37	7	140481417	140481417	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913348		P-0018846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	193	515	0	ENST00000288602.6:c.1391G>T	p.Gly464Val	p.G464V	ENST00000288602	NM_004333.4	464	gGa/gTa																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0018846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	103	286	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0018846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	212	653	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993828	72993828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	128	336	0	ENST00000268489.5:c.217G>A	p.Glu73Lys	p.E73K	ENST00000268489	NM_006885.3	73	Gag/Aag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117872	70117872	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	118	479	0	ENST00000245479.2:c.340G>C	p.Val114Leu	p.V114L	ENST00000245479	NM_000346.3	114	Gtg/Ctg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670729	134670729	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	72	512	0	ENST00000398015.3:c.640G>T	p.Glu214Ter	p.E214*	ENST00000398015	NM_004441.4	214	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175559	112175560	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0018846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	206	456	0	ENST00000257430.4:c.4268_4269del	p.Leu1423ProfsTer3	p.L1423Pfs*3	ENST00000257430	NM_000038.5	1423	cTT/c																																																																															
HGF	3082	MSKCC	GRCh37	7	81392165	81392165	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	28	274	0	ENST00000222390.5:c.112A>G	p.Thr38Ala	p.T38A	ENST00000222390	NM_000601.4	38	Aca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0018848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	188	807	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	73	744	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PAK1	5058	MSKCC	GRCh37	11	77034326	77034326	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	90	591	0	ENST00000356341.3:c.1631A>G	p.Asn544Ser	p.N544S	ENST00000356341	NM_002576.4	544	aAt/aGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	330	619	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	1123	757	0	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472569	88472569	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	244	598	0	ENST00000360948.2:c.1986G>T	p.Gln662His	p.Q662H	ENST00000360948	NM_001012338.2	662	caG/caT																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519920		P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	269	406	1	ENST00000397062.3:c.85G>T	p.Asp29Tyr	p.D29Y	ENST00000397062	NM_006164.4	29	Gat/Tat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445040	49445041	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	301	521	0	ENST00000301067.7:c.2425dupC	p.Gln809ProfsTer3	p.Q809Pfs*3	ENST00000301067	NM_003482.3	809	cag/cCag																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241923	72241923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	118	471	0	ENST00000357731.5:c.467T>C	p.Val156Ala	p.V156A	ENST00000357731	NM_173808.2	156	gTc/gCc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104357035	104357035	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	446	579	0	ENST00000369902.3:c.895C>T	p.Arg299Ter	p.R299*	ENST00000369902	NM_016169.3	299	Cga/Tga																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281275	49281275	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	234	800	0	ENST00000282018.3:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000282018	NM_020377.2	108	Gac/Tac																																																																															
NF1	4763	MSKCC	GRCh37	17	29654848	29654848	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	82	301	2	ENST00000358273.4:c.5600C>A	p.Pro1867Gln	p.P1867Q	ENST00000358273	NM_001042492.2	1867	cCg/cAg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566814	212566814	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	153	341	0	ENST00000342788.4:c.1367G>C	p.Gly456Ala	p.G456A	ENST00000342788	NM_005235.2	456	gGa/gCa																																																																															
EP300	2033	MSKCC	GRCh37	22	41573941	41573941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	554	819	0	ENST00000263253.7:c.6226G>T	p.Ala2076Ser	p.A2076S	ENST00000263253	NM_001429.3	2076	Gcc/Tcc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884884	134884884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	341	597	1	ENST00000398015.3:c.1660G>A	p.Val554Met	p.V554M	ENST00000398015	NM_004441.4	554	Gtg/Atg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86676363	86676363	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	203	400	0	ENST00000274376.6:c.2641G>C	p.Val881Leu	p.V881L	ENST00000274376	NM_002890.2	881	Gtt/Ctt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449780	149449780	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	536	657	1	ENST00000286301.3:c.1284C>G	p.Asn428Lys	p.N428K	ENST00000286301	NM_005211.3	428	aaC/aaG																																																																															
ATRX	546	MSKCC	GRCh37	X	76829820	76829820	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	242	425	0	ENST00000373344.5:c.6221A>T	p.Glu2074Val	p.E2074V	ENST00000373344	NM_000489.3	2074	gAg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0018855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	332	572	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0018855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	96	441	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175136	112175136	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	45	221	0	ENST00000257430.4:c.3845C>A	p.Ser1282Ter	p.S1282*	ENST00000257430	NM_000038.5	1282	tCa/tAa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982980	201982985	+	inframe_deletion	In_Frame_Del	DEL	GAGTTC	GAGTTC	-			P-0018855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	232	663	1	ENST00000359651.3:c.829_834del	p.Glu277_Phe278del	p.E277_F278del	ENST00000359651		277	GAGTTC/-																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710932	117710932	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	193	374	0	ENST00000368508.3:c.1340T>A	p.Val447Glu	p.V447E	ENST00000368508	NM_002944.2	447	gTg/gAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	94	634	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0018856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	91	677	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0018856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	46	301	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0018856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	90	345	0	ENST00000304494.5:c.151-1G>C		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
AXIN1	8312	MSKCC	GRCh37	16	364679	364679	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	70	600	1	ENST00000262320.3:c.883G>T	p.Gly295Ter	p.G295*	ENST00000262320	NM_003502.3	295	Gga/Tga																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591108	67591108	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	15	404	0	ENST00000274335.5:c.1701A>C	p.Lys567Asn	p.K567N	ENST00000274335		567	aaA/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0018858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	130	603	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871245	12871245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	28	209	0	ENST00000228872.4:c.472G>A	p.Asp158Asn	p.D158N	ENST00000228872	NM_004064.3	158	Gac/Aac																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929053	32929053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	67	895	0	ENST00000380152.3:c.7063G>A	p.Glu2355Lys	p.E2355K	ENST00000380152		2355	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68772279	68772279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	247	816	0	ENST00000261769.5:c.128G>T	p.Arg43Leu	p.R43L	ENST00000261769	NM_004360.3	43	cGg/cTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2191155	2191155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	109	978	0	ENST00000398665.3:c.409G>A	p.Gly137Arg	p.G137R	ENST00000398665	NM_032482.2	137	Ggg/Agg																																																																															
KDR	3791	MSKCC	GRCh37	4	55961787	55961787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	183	657	1	ENST00000263923.4:c.2774C>A	p.Ser925Tyr	p.S925Y	ENST00000263923	NM_002253.2	925	tCc/tAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249007	+	missense_variant	Missense_Mutation	ONP	GCG	GCG	TCT			P-0018858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2188	207	615	0	ENST00000275493.2:c.2303_2305delinsTCT	p.Ser768_Val769delinsIleLeu	p.S768_V769delinsIL	ENST00000275493	NM_005228.3	768	aGCGtg/aTCTtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	333	546	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069059	5069060	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	209	457	0	ENST00000381652.3:c.1370dup	p.Asn457LysfsTer2	p.N457Kfs*2	ENST00000381652	NM_004972.3	455	aca/acAa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589019	67589020	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	236	310	0	ENST00000274335.5:c.1111dupA	p.Thr371AsnfsTer8	p.T371Nfs*8	ENST00000274335		370	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	337	461	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	243	260	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936046	178936046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	42	184	0	ENST00000263967.3:c.1588C>A	p.Gln530Lys	p.Q530K	ENST00000263967	NM_006218.2	530	Cag/Aag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89156920	89156933	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCTCCTTCTCAG	CTCCTCCTTCTCAG	-			P-0018862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	104	670	0	ENST00000336596.2:c.24_37del	p.Leu10CysfsTer15	p.L10Cfs*15	ENST00000336596	NM_005233.5	8	CTCCTCCTTCTCAGc/c																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149453003	149453003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	83	471	0	ENST00000286301.3:c.943G>A	p.Val315Met	p.V315M	ENST00000286301	NM_005211.3	315	Gtg/Atg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5081841	5081841	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	196	290	0	ENST00000381652.3:c.2553del	p.Leu852TyrfsTer30	p.L852Yfs*30	ENST00000381652	NM_004972.3	851	Ttt/tt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	215	639	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275842	38275842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	263	690	0	ENST00000425967.3:c.1427G>A	p.Arg476Gln	p.R476Q	ENST00000425967	NM_001174067.1	476	cGg/cAg																																																																															
WT1	7490	MSKCC	GRCh37	11	32456600	32456600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	45	174	0	ENST00000332351.3:c.292G>A	p.Gly98Ser	p.G98S	ENST00000332351	NM_024426.4	98	Ggc/Agc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112287	115112287	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	113	149	2	ENST00000257566.3:c.1453C>T	p.Gln485Ter	p.Q485*	ENST00000257566	NM_016569.3	485	Cag/Tag																																																																															
CDH1	999	MSKCC	GRCh37	16	68849628	68849628	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	252	709	0	ENST00000261769.5:c.1531C>T	p.Gln511Ter	p.Q511*	ENST00000261769	NM_004360.3	511	Cag/Tag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864328	57864328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201538749		P-0018870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	353	796	0	ENST00000228682.2:c.1805C>T	p.Ser602Leu	p.S602L	ENST00000228682	NM_005269.2	602	tCg/tTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662633	227662633	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	106	597	0	ENST00000305123.5:c.822del	p.Asn275ThrfsTer25	p.N275Tfs*25	ENST00000305123	NM_005544.2	274	tcC/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0018880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	19	850	2	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37676267	37676267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	380	1000	3	ENST00000447079.4:c.3022C>T	p.Arg1008Trp	p.R1008W	ENST00000447079	NM_015083.1	1008	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	216	837	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	151	615	0	ENST00000269305.4:c.772G>C	p.Glu258Gln	p.E258Q	ENST00000269305	NM_001126112.2	258	Gaa/Caa																																																																															
RB1	5925	MSKCC	GRCh37	13	48939031	48939031	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0018881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	84	430	0	ENST00000267163.4:c.863T>A	p.Val288Glu	p.V288E	ENST00000267163	NM_000321.2	288	gTg/gAg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30194876	30194876	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	141	629	0	ENST00000331968.5:c.269C>G	p.Pro90Arg	p.P90R	ENST00000331968	NM_002742.2	90	cCt/cGt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134277	11134277	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	208	784	0	ENST00000344626.4:c.2943G>C	p.Lys981Asn	p.K981N	ENST00000344626	NM_003072.3	981	aaG/aaC																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098988	178098988	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	89	397	0	ENST00000397062.3:c.57G>C	p.Leu19Phe	p.L19F	ENST00000397062	NM_006164.4	19	ttG/ttC																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197020	123197020	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	93	797	0	ENST00000218089.9:c.1786G>C	p.Asp596His	p.D596H	ENST00000218089	NM_001042749.1	596	Gat/Cat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0018882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	259	613	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0018882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	209	608	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
CDH1	999	MSKCC	GRCh37	16	68835596	68835596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	277	724	0	ENST00000261769.5:c.187C>T	p.Arg63Ter	p.R63*	ENST00000261769	NM_004360.3	63	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63409944	63409944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	164	442	0	ENST00000330258.3:c.3223G>C	p.Ala1075Pro	p.A1075P	ENST00000330258	NM_152424.3	1075	Gcc/Ccc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974722	15974722	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0018882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	204	467	0	ENST00000268712.3:c.4152+1del		p.X1384_splice	ENST00000268712	NM_006311.3	1384																																																																																
RUNX1	861	MSKCC	GRCh37	21	36206728	36206728	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	255	655	0	ENST00000300305.3:c.784C>T	p.Gln262Ter	p.Q262*	ENST00000300305		262	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0018883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	41	1252	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602314	10602314	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	54	1059	0	ENST00000171111.5:c.1264G>T	p.Asp422Tyr	p.D422Y	ENST00000171111	NM_203500.1	422	Gat/Tat																																																																															
TET1	80312	MSKCC	GRCh37	10	70332805	70332805	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	55	1048	0	ENST00000373644.4:c.710G>C	p.Ser237Thr	p.S237T	ENST00000373644	NM_030625.2	237	aGt/aCt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445043	49445043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	55	758	1	ENST00000301067.7:c.2423C>T	p.Pro808Leu	p.P808L	ENST00000301067	NM_003482.3	808	cCc/cTc																																																																															
MGA	23269	MSKCC	GRCh37	15	42053955	42053955	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	42	743	1	ENST00000219905.7:c.7417G>T	p.Gly2473Ter	p.G2473*	ENST00000219905	NM_001164273.1	2473	Gga/Tga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610198	10610198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	113	1000	0	ENST00000171111.5:c.512G>A	p.Cys171Tyr	p.C171Y	ENST00000171111	NM_203500.1	171	tGc/tAc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502704	149502704	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	72	683	0	ENST00000261799.4:c.2084G>T	p.Arg695Leu	p.R695L	ENST00000261799	NM_002609.3	695	cGc/cTc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513451	149513452	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	81	794	1	ENST00000261799.4:c.751dup	p.Arg251ProfsTer13	p.R251Pfs*13	ENST00000261799	NM_002609.3	251	cgc/cCgc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965605	93965605	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	68	887	0	ENST00000369303.4:c.2323T>A	p.Ser775Thr	p.S775T	ENST00000369303	NM_004440.3	775	Tca/Aca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507405	8507405	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	31	527	0	ENST00000356435.5:c.1573G>T	p.Glu525Ter	p.E525*	ENST00000356435		525	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	285	616	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94201025	94201025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	41	487	1	ENST00000323929.3:c.1052G>A	p.Arg351His	p.R351H	ENST00000323929	NM_005591.3	351	cGt/cAt																																																																															
ALK	238	MSKCC	GRCh37	2	29450538	29450538	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0018888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	63	607	0	ENST00000389048.3:c.2816G>C	p.Gly939Ala	p.G939A	ENST00000389048	NM_004304.4	939	gGc/gCc																																																																															
IL10	3586	MSKCC	GRCh37	1	206944324	206944324	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	169	790	0	ENST00000423557.1:c.306C>G	p.Asp102Glu	p.D102E	ENST00000423557	NM_000572.2	102	gaC/gaG																																																																															
CALR	811	MSKCC	GRCh37	19	13050913	13050914	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AACT			P-0018889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	161	773	0	ENST00000316448.5:c.446_449dup	p.Tyr150Ter	p.Y150*	ENST00000316448	NM_004343.3	148	-/AACT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845397	151845397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	198	754	1	ENST00000262189.6:c.13615G>A	p.Val4539Met	p.V4539M	ENST00000262189	NM_170606.2	4539	Gtg/Atg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023202	27023202	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	89	470	0	ENST00000324856.7:c.308C>A	p.Ser103Ter	p.S103*	ENST00000324856	NM_006015.4	103	tCg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	428	801	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515193	103515193	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	75	502	0	ENST00000355739.4:c.1694A>G	p.Asp565Gly	p.D565G	ENST00000355739	NM_000123.3	565	gAt/gGt																																																																															
AKT1	207	MSKCC	GRCh37	14	105241453	105241453	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	214	894	0	ENST00000349310.3:c.527A>T	p.Tyr176Phe	p.Y176F	ENST00000349310	NM_001014432.1	176	tAc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0018890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	191	749	1	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
NF1	4763	MSKCC	GRCh37	17	29657349	29657349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	137	837	0	ENST00000358273.4:c.5645G>T	p.Cys1882Phe	p.C1882F	ENST00000358273	NM_001042492.2	1882	tGt/tTt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25536834	25536834	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	158	753	1	ENST00000264709.3:c.20G>T	p.Ser7Ile	p.S7I	ENST00000264709	NM_175629.2	7	aGc/aTc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546698	9546698	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	78	374	0	ENST00000353224.5:c.1324C>A	p.Pro442Thr	p.P442T	ENST00000353224	NM_177990.2	442	Cca/Aca																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664486	138664486	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	70	739	0	ENST00000330315.3:c.1079A>C	p.Tyr360Ser	p.Y360S	ENST00000330315	NM_023067.3	360	tAc/tCc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143044448	143044448	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	120	457	0	ENST00000262992.4:c.2014T>A	p.Tyr672Asn	p.Y672N	ENST00000262992	NM_001101669.1	672	Tac/Aac																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143045788	143045788	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	173	709	0	ENST00000262992.4:c.1846C>T	p.Gln616Ter	p.Q616*	ENST00000262992	NM_001101669.1	616	Cag/Tag																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969912	161969912	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	83	711	0	ENST00000366898.1:c.1057G>T	p.Glu353Ter	p.E353*	ENST00000366898	NM_004562.2	353	Gaa/Taa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444486	50444486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	59	351	0	ENST00000331340.3:c.416A>G	p.His139Arg	p.H139R	ENST00000331340	NM_006060.4	139	cAc/cGc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046489	69046489	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	93	776	0	ENST00000288368.4:c.3962A>G	p.Gln1321Arg	p.Q1321R	ENST00000288368	NM_024870.2	1321	cAg/cGg																																																																															
PAX5	5079	MSKCC	GRCh37	9	36840597	36840597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	102	864	0	ENST00000358127.4:c.1136C>A	p.Ala379Asp	p.A379D	ENST00000358127	NM_001280556.1	379	gCc/gAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	230	511	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	224	797	0	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	223	634	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0018891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	149	457	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137033	64137033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	268	816	0	ENST00000334205.4:c.1544C>T	p.Ser515Leu	p.S515L	ENST00000334205	NM_003942.2	515	tCg/tTg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644597	21644597	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	236	655	0	ENST00000421138.2:c.70C>G	p.Gln24Glu	p.Q24E	ENST00000421138		24	Caa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916932	178916932	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	235	694	0	ENST00000263967.3:c.319A>T	p.Asn107Tyr	p.N107Y	ENST00000263967	NM_006218.2	107	Aac/Tac																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0018894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	162	515	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
CBFB	865	MSKCC	GRCh37	16	67063321	67063322	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	135	401	0	ENST00000412916.2:c.11_12insA	p.Val5ArgfsTer15	p.V5Rfs*15	ENST00000412916		4	gtc/gtAc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662481	227662481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	68	446	2	ENST00000305123.5:c.974G>A	p.Arg325His	p.R325H	ENST00000305123	NM_005544.2	325	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	162	755	0	ENST00000269305.4:c.747G>C	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agC																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88651985	88651988	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	AAGT	AAGT	-			P-0018897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	44	507	0	ENST00000372037.3:c.333+2_333+5del		p.X111_splice	ENST00000372037	NM_004329.2	111																																																																																
MDC1	9656	MSKCC	GRCh37	6	30672764	30672764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	66	760	0	ENST00000376406.3:c.4196C>T	p.Ser1399Phe	p.S1399F	ENST00000376406	NM_014641.2	1399	tCc/tTc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157510861	157510862	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	115	876	0	ENST00000346085.5:c.3638dup	p.Thr1214TyrfsTer32	p.T1214Yfs*32	ENST00000346085	NM_020732.3	1212	-/C																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242494	+	protein_altering_variant	In_Frame_Del	DEL	TAAGAGAAGCAACATCTCCGAAAGC	TAAGAGAAGCAACATCTCCGAAAGC	CGAAAGA			P-0018897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	148	889	0	ENST00000275493.2:c.2240_2264delinsCGAAAGA	p.Leu747_Ala755delinsSerLysAsp	p.L747_A755delinsSKD	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCCGAAAGCc/tCGAAAGAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0018898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	107	529	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797301	135797301	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	77	394	0	ENST00000298552.3:c.568del	p.Arg190AlafsTer20	p.R190Afs*20	ENST00000298552	NM_001162426.1	190	Cgc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	63	643	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0018915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	114	792	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5240233	5240233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	74	708	1	ENST00000357368.4:c.1681C>T	p.Arg561Trp	p.R561W	ENST00000357368	NM_002850.3	561	Cgg/Tgg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852659	63852659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	91	489	1	ENST00000279873.7:c.3437C>T	p.Ala1146Val	p.A1146V	ENST00000279873	NM_032199.2	1146	gCg/gTg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011192	12011192	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	76	342	0	ENST00000353533.5:c.600del	p.Pro201GlnfsTer5	p.P201Qfs*5	ENST00000353533	NM_003010.3	200	aTt/at																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5219432	5219432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	59	584	2	ENST00000357368.4:c.3812C>T	p.Pro1271Leu	p.P1271L	ENST00000357368	NM_002850.3	1271	cCg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224024	36224024	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1537	167	825	0	ENST00000222270.7:c.6574A>G	p.Ile2192Val	p.I2192V	ENST00000222270	NM_014727.1	2192	Ata/Gta																																																																															
MDM2	4193	MSKCC	GRCh37	12	69230468	69230468	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	39	417	0	ENST00000462284.1:c.857T>C	p.Val286Ala	p.V286A	ENST00000462284	NM_002392.5	286	gTg/gCg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133923	38133923	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1296	117	857	0	ENST00000317025.8:c.3963A>C	p.Glu1321Asp	p.E1321D	ENST00000317025	NM_023034.1	1321	gaA/gaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	87	676	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438204	49438204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	150	644	2	ENST00000301067.7:c.5065C>T	p.Arg1689Cys	p.R1689C	ENST00000301067	NM_003482.3	1689	Cgt/Tgt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986603	36986652	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCGCCAGGTCCGGAGACTGGCCTGCGCTGCCTGGCTGGTGGCCCGGGT	GTGCGCCAGGTCCGGAGACTGGCCTGCGCTGCCTGGCTGGTGGCCCGGGT	-			P-0018923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	45	356	1	ENST00000354822.5:c.1037_1086del	p.His346ProfsTer76	p.H346Pfs*76	ENST00000354822	NM_001079668.2	346	cACCCGGGCCACCAGCCAGGCAGCGCAGGCCAGTCTCCGGACCTGGCGCAC/c																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986805	36986808	+	frameshift_variant	Frame_Shift_Del	DEL	TTCA	TTCA	-			P-0018923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	55	288	0	ENST00000354822.5:c.881_884del	p.Val294GlufsTer86	p.V294Efs*86	ENST00000354822	NM_001079668.2	294	gTGAAa/ga																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39609305	39609305	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	56	365	0	ENST00000262039.4:c.1607G>C	p.Arg536Thr	p.R536T	ENST00000262039	NM_002647.2	536	aGa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0018933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	519	755	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508176	106508176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	104	207	0	ENST00000359195.3:c.170C>T	p.Ala57Val	p.A57V	ENST00000359195	NM_002649.2	57	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0018933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	263	738	1	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18277104	18277104	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	141	465	0	ENST00000222254.8:c.1551G>C	p.Glu517Asp	p.E517D	ENST00000222254	NM_005027.3	517	gaG/gaC																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279579	18279579	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1403656005		P-0018933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	666	752	2	ENST00000222254.8:c.1852G>A	p.Glu618Lys	p.E618K	ENST00000222254	NM_005027.3	618	Gag/Aag																																																																															
ALK	238	MSKCC	GRCh37	2	29606727	29606727	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0018933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	92	516	0	ENST00000389048.3:c.1155-2A>T		p.X385_splice	ENST00000389048	NM_004304.4	385																																																																																
ACVR1	90	MSKCC	GRCh37	2	158634645	158634645	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0018933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	112	323	0	ENST00000263640.3:c.541G>T	p.Ala181Ser	p.A181S	ENST00000263640	NM_001105.4	181	Gca/Tca																																																																															
MITF	4286	MSKCC	GRCh37	3	69990439	69990439	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	83	551	1	ENST00000352241.4:c.719A>T	p.Glu240Val	p.E240V	ENST00000352241	NM_198159.2	240	gAa/gTa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056646	26056646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	13	242	1	ENST00000343677.2:c.11C>T	p.Thr4Ile	p.T4I	ENST00000343677	NM_005319.3	4	aCt/aTt																																																																															
ATRX	546	MSKCC	GRCh37	X	76777824	76777824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	265	811	0	ENST00000373344.5:c.6892C>T	p.Pro2298Ser	p.P2298S	ENST00000373344	NM_000489.3	2298	Ccc/Tcc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0018939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	646	597	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	99	607	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	41	652	3	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740797	145740797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	208	884	2	ENST00000428558.2:c.1303C>T	p.Pro435Ser	p.P435S	ENST00000428558	NM_004260.3	435	Cct/Tct																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158611	26158611	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	51	381	0	ENST00000289316.2:c.214G>C	p.Glu72Gln	p.E72Q	ENST00000289316	NM_138720.2	72	Gag/Cag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346926	89346926	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	29	291	0	ENST00000301030.4:c.6024C>G	p.Phe2008Leu	p.F2008L	ENST00000301030	NM_001256183.1	2008	ttC/ttG																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11958204	11958204	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0018939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	70	596	0	ENST00000353533.5:c.116-2A>T		p.X39_splice	ENST00000353533	NM_003010.3	39																																																																																
DNMT3A	1788	MSKCC	GRCh37	2	25470507	25470507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	109	874	0	ENST00000264709.3:c.967G>A	p.Glu323Lys	p.E323K	ENST00000264709	NM_175629.2	323	Gaa/Aaa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703527	47703527	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	60	607	0	ENST00000233146.2:c.2027C>A	p.Ser676Ter	p.S676*	ENST00000233146	NM_000251.2	676	tCa/tAa																																																																															
EP300	2033	MSKCC	GRCh37	22	41543870	41543870	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	67	671	0	ENST00000263253.7:c.2161G>C	p.Ala721Pro	p.A721P	ENST00000263253	NM_001429.3	721	Gcc/Ccc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67593269	67593269	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	54	534	0	ENST00000274335.5:c.2015T>A	p.Ile672Lys	p.I672K	ENST00000274335		672	aTa/aAa																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250551	26250551	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	67	622	0	ENST00000446824.2:c.283G>C	p.Glu95Gln	p.E95Q	ENST00000446824	NM_021018.2	95	Gag/Cag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741524	145741524	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	215	795	0	ENST00000428558.2:c.979C>G	p.Gln327Glu	p.Q327E	ENST00000428558	NM_004260.3	327	Caa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578484	7578485	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	107	821	0	ENST00000269305.4:c.445dup	p.Ser149PhefsTer32	p.S149Ffs*32	ENST00000269305	NM_001126112.2	149	tcc/tTcc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509532	106509532	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	86	777	0	ENST00000359195.3:c.1526A>G	p.Asp509Gly	p.D509G	ENST00000359195	NM_002649.2	509	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	437	761	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	242	438	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101138	27101138	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	254	881	1	ENST00000324856.7:c.4420C>T	p.Gln1474Ter	p.Q1474*	ENST00000324856	NM_006015.4	1474	Caa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910883	114910883	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	156	527	1	ENST00000543371.1:c.1001+1G>A		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																																
ATM	472	MSKCC	GRCh37	11	108186554	108186554	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	83	354	0	ENST00000278616.4:c.6011T>G	p.Leu2004Arg	p.L2004R	ENST00000278616	NM_000051.3	2004	cTt/cGt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701204	43701204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	230	778	0	ENST00000382044.4:c.5491G>T	p.Val1831Leu	p.V1831L	ENST00000382044	NM_001141980.1	1831	Gtg/Ttg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99459975	99459975	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	143	656	0	ENST00000268035.6:c.2071G>C	p.Val691Leu	p.V691L	ENST00000268035	NM_000875.3	691	Gtg/Ctg																																																																															
STK11	6794	MSKCC	GRCh37	19	1223103	1223103	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782058		P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	234	787	0	ENST00000326873.7:c.1040C>T	p.Ala347Val	p.A347V	ENST00000326873	NM_000455.4	347	gCg/gTg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117658490	117658490	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	197	753	0	ENST00000368508.3:c.5093A>G	p.Glu1698Gly	p.E1698G	ENST00000368508	NM_002944.2	1698	gAg/gGg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683741	162683741	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	198	681	0	ENST00000366898.1:c.228del	p.Gly77ValfsTer4	p.G77Vfs*4	ENST00000366898	NM_004562.2	76	aaA/aa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509250	106509250	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	223	737	0	ENST00000359195.3:c.1244A>C	p.Glu415Ala	p.E415A	ENST00000359195	NM_002649.2	415	gAg/gCg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145736935	145736936	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1373	196	714	0	ENST00000428558.2:c.3505dup	p.Ser1169LysfsTer58	p.S1169Kfs*58	ENST00000428558	NM_004260.3	1169	agc/aAgc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518393	8518393	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	69	304	0	ENST00000356435.5:c.998A>T	p.Glu333Val	p.E333V	ENST00000356435		333	gAg/gTg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570385	87570385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	231	835	1	ENST00000277120.3:c.2125G>A	p.Gly709Arg	p.G709R	ENST00000277120		709	Ggg/Agg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	174	831	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0018949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	348	683	1	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0018949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	91	400	1	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0018949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	182	793	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	215	734	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249453	153249453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	166	814	1	ENST00000281708.4:c.1325C>T	p.Thr442Ile	p.T442I	ENST00000281708	NM_033632.3	442	aCa/aTa																																																																															
ATM	472	MSKCC	GRCh37	11	108141874	108141874	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587781558		P-0018949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	116	524	1	ENST00000278616.4:c.2921+1G>A		p.X974_splice	ENST00000278616	NM_000051.3	974																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114903733	114903733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	201	848	2	ENST00000543371.1:c.737C>T	p.Ser246Leu	p.S246L	ENST00000543371	NM_001198531.1	246	tCg/tTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910883	114910883	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	121	510	2	ENST00000543371.1:c.1001+1G>A		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48604790	48605164	+	coding_sequence_variant,3_prime_UTR_variant	In_Frame_Del	DEL	GAAGTACTTCATACCATGCCGATTGCAGACCCACAACCTTTAGACTGAGGTCTTTTACCGTTGGGGCCCTTAACCTTATCAGGATGGTGGACTACAAAATACAATCCTGTTTATAATCTGAAGATATATTTCACTTTTGTTCTGCTTTATCTTTTCATAAAGGGTTGAAAATGTGTTTGCTGCCTTGCTCCTAGCAGACAGAAACTGGATTAAAACAATTTTTTTTTTCCTCTTCAGAACTTGTCAGGCATGGCTCAGAGCTTGAAGATTAGGAGAAACACATTCTTATTAATTCTTCACCTGTTATGTATGAAGGAATCATTCCAGTGCTAGAAAATTTAGCCCTTTAAAACGTCTTAGAGCCTTTTATCTGCA	GAAGTACTTCATACCATGCCGATTGCAGACCCACAACCTTTAGACTGAGGTCTTTTACCGTTGGGGCCCTTAACCTTATCAGGATGGTGGACTACAAAATACAATCCTGTTTATAATCTGAAGATATATTTCACTTTTGTTCTGCTTTATCTTTTCATAAAGGGTTGAAAATGTGTTTGCTGCCTTGCTCCTAGCAGACAGAAACTGGATTAAAACAATTTTTTTTTTCCTCTTCAGAACTTGTCAGGCATGGCTCAGAGCTTGAAGATTAGGAGAAACACATTCTTATTAATTCTTCACCTGTTATGTATGAAGGAATCATTCCAGTGCTAGAAAATTTAGCCCTTTAAAACGTCTTAGAGCCTTTTATCTGCA	-			P-0018949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	113	639	0	ENST00000342988.3:c.1615_*330delGTACTTCATACCATGCCGATTGCAGACCCACAACCTTTAGACTGAGGTCTTTTACCGTTGGGGCCCTTAACCTTATCAGGATGGTGGACTACAAAATACAATCCTGTTTATAATCTGAAGATATATTTCACTTTTGTTCTGCTTTATCTTTTCATAAAGGGTTGAAAATGTGTTTGCTGCCTTGCTCCTAGCAGACAGAAACTGGATTAAAACAATTTTTTTTTTCCTCTTCAGAACTTGTCAGGCATGGCTCAGAGCTTGAAGATTAGGAGAAACACATTCTTATTAATTCTTCACCTGTTATGTATGAAGGAATCATTCCAGTGCTAGAAAATTTAGCCCTTTAAAACGTCTTAGAGCCTTTTATCTGCAGAA		p.*539*	ENST00000342988	NM_005359.5	538																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0018950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	111	745	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	78	684	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133254192	133254192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	110	695	1	ENST00000320574.5:c.692G>A	p.Arg231His	p.R231H	ENST00000320574	NM_006231.2	231	cGc/cAc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40476776	40476776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	166	896	0	ENST00000264657.5:c.1553G>A	p.Arg518Gln	p.R518Q	ENST00000264657	NM_139276.2	518	cGa/cAa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851406	156851406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	135	961	0	ENST00000524377.1:c.2363C>T	p.Pro788Leu	p.P788L	ENST00000524377	NM_002529.3	788	cCt/cTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653808	89653808	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	56	634	1	ENST00000371953.3:c.106G>T	p.Gly36Ter	p.G36*	ENST00000371953	NM_000314.4	36	Gga/Tga																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42870093	42870093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	145	901	0	ENST00000398585.3:c.79del	p.Leu27TyrfsTer14	p.L27Yfs*14	ENST00000398585	NM_001135099.1	27	Cta/ta																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778100	27778100	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	50	699	1	ENST00000369163.2:c.249G>T	p.Leu83Phe	p.L83F	ENST00000369163	NM_003536.2	83	ttG/ttT																																																																															
TP53	7157	MSKCC	GRCh37	17	7576868	7576868	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	166	695	0	ENST00000269305.4:c.978del	p.Glu326AspfsTer19	p.E326Dfs*19	ENST00000269305	NM_001126112.2	326	gaA/ga																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073667	8073667	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	49	439	1	ENST00000377482.5:c.992G>T	p.Arg331Leu	p.R331L	ENST00000377482	NM_018948.3	331	cGc/cTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828208	72828220	+	frameshift_variant	Frame_Shift_Del	DEL	GGTTTTACTCACA	GGTTTTACTCACA	-			P-0018956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	160	881	1	ENST00000268489.5:c.8361_8373del	p.Val2788TrpfsTer9	p.V2788Wfs*9	ENST00000268489	NM_006885.3	2787	ccTGTGAGTAAAACC/cc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61715335	61715335	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	117	979	0	ENST00000401558.2:c.2278T>C	p.Ser760Pro	p.S760P	ENST00000401558	NM_003400.3	760	Tct/Cct																																																																															
IRF4	3662	MSKCC	GRCh37	6	393220	393220	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	182	655	0	ENST00000380956.4:c.68A>T	p.Lys23Met	p.K23M	ENST00000380956	NM_001195286.1	23	aAg/aTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376719	8376719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	73	618	0	ENST00000356435.5:c.4394G>T	p.Cys1465Phe	p.C1465F	ENST00000356435		1465	tGt/tTt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0018958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	1271	497	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0018958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	535	963	1	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
GATA3	2625	MSKCC	GRCh37	10	8111553	8111554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	374	625	0	ENST00000346208.3:c.1041dup	p.His348SerfsTer4	p.H348Sfs*4	ENST00000346208		347	ctt/cTtt																																																																															
ATM	472	MSKCC	GRCh37	11	108123575	108123575	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	184	533	1	ENST00000278616.4:c.1834C>A	p.Leu612Ile	p.L612I	ENST00000278616	NM_000051.3	612	Ctt/Att																																																																															
ATM	472	MSKCC	GRCh37	11	108173738	108173738	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	146	514	1	ENST00000278616.4:c.5478A>T	p.Leu1826Phe	p.L1826F	ENST00000278616	NM_000051.3	1826	ttA/ttT																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016565	12016565	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	241	396	0	ENST00000353533.5:c.701A>G	p.Asn234Ser	p.N234S	ENST00000353533	NM_003010.3	234	aAt/aGt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2227117	2227117	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	181	639	1	ENST00000398665.3:c.4597A>T	p.Thr1533Ser	p.T1533S	ENST00000398665	NM_032482.2	1533	Aca/Tca																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1331474	1331474	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	111	798	1	ENST00000381566.1:c.54G>A	p.Trp18Ter	p.W18*	ENST00000381566		18	tgG/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	218	812	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519997		P-0018962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	232	793	0	ENST00000269305.4:c.332T>G	p.Leu111Arg	p.L111R	ENST00000269305	NM_001126112.2	111	cTg/cGg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027074	48027086	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGGGTGATGTT	TTGGGGTGATGTT	-			P-0018962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	81	536	0	ENST00000234420.5:c.1952_1964del	p.Ile651AsnfsTer8	p.I651Nfs*8	ENST00000234420	NM_000179.2	651	aTTGGGGTGATGTTa/aa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867457	35867457	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	90	612	0	ENST00000303115.3:c.271A>G	p.Ile91Val	p.I91V	ENST00000303115	NM_002185.3	91	Ata/Gta																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974676	21974676	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0018962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	80	650	1	ENST00000304494.5:c.150+1G>A		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																																
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0018963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	161	638	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992390	72992390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1583	132	1373	1	ENST00000268489.5:c.1655C>T	p.Ser552Phe	p.S552F	ENST00000268489	NM_006885.3	552	tCt/tTt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52668757	52668757	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	34	559	0	ENST00000394830.3:c.1162C>T	p.Gln388Ter	p.Q388*	ENST00000394830	NM_018313.4	388	Cag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108201021	108201022	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	46	469	0	ENST00000278616.4:c.7389dup	p.Cys2464MetfsTer2	p.C2464Mfs*2	ENST00000278616	NM_000051.3	2463	tta/ttAa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214658	5214658	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1794	135	1711	2	ENST00000357368.4:c.4408G>C	p.Glu1470Gln	p.E1470Q	ENST00000357368	NM_002850.3	1470	Gag/Cag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602494	10602494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1239	126	1092	3	ENST00000171111.5:c.1084C>T	p.Arg362Trp	p.R362W	ENST00000171111	NM_203500.1	362	Cgg/Tgg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135804201	135804201	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	66	752	1	ENST00000298552.3:c.59G>T	p.Gly20Val	p.G20V	ENST00000298552	NM_001162426.1	20	gGt/gTt																																																																															
ATRX	546	MSKCC	GRCh37	X	76938505	76938505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	24	243	0	ENST00000373344.5:c.2243C>T	p.Ser748Phe	p.S748F	ENST00000373344	NM_000489.3	748	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	192	1181	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775720	9775720	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	99	1541	0	ENST00000377346.4:c.263G>T	p.Arg88Leu	p.R88L	ENST00000377346	NM_005026.3	88	cGt/cTt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779065	3779065	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	68	1064	0	ENST00000262367.5:c.5983A>G	p.Met1995Val	p.M1995V	ENST00000262367	NM_004380.2	1995	Atg/Gtg																																																																															
NF1	4763	MSKCC	GRCh37	17	29553530	29553530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	111	1104	0	ENST00000358273.4:c.2079G>T	p.Met693Ile	p.M693I	ENST00000358273	NM_001042492.2	693	atG/atT																																																																															
CENPA	1058	MSKCC	GRCh37	2	27015035	27015035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	154	827	0	ENST00000335756.4:c.137G>T	p.Gly46Val	p.G46V	ENST00000335756	NM_001809.3	46	gGt/gTt																																																																															
INHA	3623	MSKCC	GRCh37	2	220440068	220440068	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	128	2050	0	ENST00000243786.2:c.923del	p.Pro308LeufsTer28	p.P308Lfs*28	ENST00000243786	NM_002191.3	307	gtC/gt																																																																															
KIT	3815	MSKCC	GRCh37	4	55603390	55603390	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	78	693	0	ENST00000288135.5:c.2746A>G	p.Thr916Ala	p.T916A	ENST00000288135	NM_000222.2	916	Aca/Gca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629232	187629232	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	73	807	0	ENST00000441802.2:c.1750G>T	p.Val584Leu	p.V584L	ENST00000441802	NM_005245.3	584	Gtg/Ttg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131953899	131953899	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	37	334	0	ENST00000265335.6:c.3302A>T	p.Glu1101Val	p.E1101V	ENST00000265335		1101	gAg/gTg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426427	47426427	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	70	1175	2	ENST00000377045.4:c.770G>T	p.Ser257Ile	p.S257I	ENST00000377045	NM_001654.4	257	aGc/aTc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060983	38060983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	32	867	0	ENST00000250448.2:c.1006G>T	p.Asp336Tyr	p.D336Y	ENST00000250448	NM_004496.3	336	Gac/Tac																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143130180	143130180	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0018969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	30	557	0	ENST00000262992.4:c.837-1G>C		p.X279_splice	ENST00000262992	NM_001101669.1	279																																																																																
EGFL7	51162	MSKCC	GRCh37	9	139563068	139563068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	33	1876	3	ENST00000308874.7:c.140G>A	p.Arg47His	p.R47H	ENST00000308874		47	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7576865	7576865	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0018971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	191	546	2	ENST00000269305.4:c.981T>G	p.Tyr327Ter	p.Y327*	ENST00000269305	NM_001126112.2	327	taT/taG																																																																															
ALK	238	MSKCC	GRCh37	2	29455222	29455222	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	90	758	0	ENST00000389048.3:c.2580A>C	p.Arg860Ser	p.R860S	ENST00000389048	NM_004304.4	860	agA/agC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178947162	178947162	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	96	446	0	ENST00000263967.3:c.2598G>T	p.Leu866Phe	p.L866F	ENST00000263967	NM_006218.2	866	ttG/ttT																																																																															
APC	324	MSKCC	GRCh37	5	112157646	112157647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	174	468	0	ENST00000257430.4:c.1369dup	p.Ser457PhefsTer3	p.S457Ffs*3	ENST00000257430	NM_000038.5	456	ctt/cTtt																																																																															
SYK	6850	MSKCC	GRCh37	9	93637110	93637110	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	89	841	2	ENST00000375746.1:c.1160A>G	p.Lys387Arg	p.K387R	ENST00000375746	NM_001174167.1	387	aAg/aGg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209370	98209370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	106	796	0	ENST00000331920.6:c.4168G>T	p.Gly1390Trp	p.G1390W	ENST00000331920	NM_000264.3	1390	Ggg/Tgg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411221	63411222	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0018971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	322	930	0	ENST00000330258.3:c.1945_1946del	p.Lys649AlafsTer57	p.K649Afs*57	ENST00000330258	NM_152424.3	649	AAg/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	451	1035	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771828	135771828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	106	926	0	ENST00000298552.3:c.3289C>T	p.Arg1097Cys	p.R1097C	ENST00000298552	NM_001162426.1	1097	Cgt/Tgt																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797867	45797867	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	190	784	0	ENST00000372115.3:c.862G>T	p.Val288Leu	p.V288L	ENST00000372115	NM_001048171.1	288	Gtg/Ttg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46211462	46211462	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	84	357	0	ENST00000334344.6:c.428G>C	p.Arg143Pro	p.R143P	ENST00000334344	NM_152641.2	143	cGt/cCt																																																																															
RB1	5925	MSKCC	GRCh37	13	48941661	48941661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	304	400	2	ENST00000267163.4:c.973del	p.Tyr325IlefsTer7	p.Y325Ifs*7	ENST00000267163	NM_000321.2	324	aTt/at																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434967	110434967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	1095	1034	4	ENST00000375856.3:c.3434G>A	p.Arg1145His	p.R1145H	ENST00000375856	NM_003749.2	1145	cGc/cAc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67655372	67655372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	87	833	0	ENST00000264010.4:c.1235G>T	p.Cys412Phe	p.C412F	ENST00000264010	NM_006565.3	412	tGt/tTt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176678804	176678804	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	84	658	0	ENST00000439151.2:c.4715G>C	p.Gly1572Ala	p.G1572A	ENST00000439151	NM_022455.4	1572	gGa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0018979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	46	812	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0018979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	33	806	1	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986749	36986749	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	11	172	0	ENST00000354822.5:c.940G>C	p.Gly314Arg	p.G314R	ENST00000354822	NM_001079668.2	314	Ggc/Cgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0018980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	56	846	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	238	884	1	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0018988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	506	942	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860064	57860064	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	236	1025	1	ENST00000228682.2:c.804C>A	p.Phe268Leu	p.F268L	ENST00000228682	NM_005269.2	268	ttC/ttA																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602328	10602329	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0018988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	238	901	2	ENST00000171111.5:c.1249_1250delinsTT	p.Gly417Leu	p.G417L	ENST00000171111	NM_203500.1	417	GGg/TTg																																																																															
RAC1	5879	MSKCC	GRCh37	7	6439806	6439806	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	140	524	0	ENST00000356142.4:c.332A>C	p.Asn111Thr	p.N111T	ENST00000356142	NM_018890.3	111	aAt/aCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0019000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	428	973	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0019000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	66	702	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117888	70117888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	253	593	0	ENST00000245479.2:c.356C>A	p.Ala119Glu	p.A119E	ENST00000245479	NM_000346.3	119	gCg/gAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152115	11152115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	235	807	1	ENST00000344626.4:c.4303G>A	p.Asp1435Asn	p.D1435N	ENST00000344626	NM_003072.3	1435	Gac/Aac																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911607	134911607	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1384145752		P-0019000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	107	707	1	ENST00000398015.3:c.2072G>A	p.Arg691Gln	p.R691Q	ENST00000398015	NM_004441.4	691	cGg/cAg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749527	41749527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	187	654	1	ENST00000226382.2:c.268G>A	p.Gly90Ser	p.G90S	ENST00000226382	NM_003924.3	90	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0019010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	32	836	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
SDHA	6389	MSKCC	GRCh37	5	251554	251554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	65	1009	2	ENST00000264932.6:c.1765C>T	p.Arg589Trp	p.R589W	ENST00000264932	NM_004168.2	589	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1654	79	1512	0	ENST00000269305.4:c.434T>A	p.Leu145Gln	p.L145Q	ENST00000269305	NM_001126112.2	145	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0019021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	20	745	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28609722	28609722	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	204	839	0	ENST00000241453.7:c.1507A>T	p.Met503Leu	p.M503L	ENST00000241453	NM_004119.2	503	Atg/Ttg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569849	95569849	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	154	480	0	ENST00000343455.3:c.3884G>T	p.Gly1295Val	p.G1295V	ENST00000343455	NM_177438.2	1295	gGa/gTa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46276064	46276064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	470	795	0	ENST00000371998.3:c.3500C>T	p.Pro1167Leu	p.P1167L	ENST00000371998		1167	cCc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112179225	112179225	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	192	495	0	ENST00000257430.4:c.7934A>T	p.Tyr2645Phe	p.Y2645F	ENST00000257430	NM_000038.5	2645	tAt/tTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	490	593	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0019024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	360	748	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	279	621	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9787044	9787044	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	341	662	0	ENST00000377346.4:c.3075G>C	p.Glu1025Asp	p.E1025D	ENST00000377346	NM_005026.3	1025	gaG/gaC																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256552	16256552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	367	758	0	ENST00000375759.3:c.3817G>A	p.Glu1273Lys	p.E1273K	ENST00000375759	NM_015001.2	1273	Gag/Aag																																																																															
MPL	4352	MSKCC	GRCh37	1	43818343	43818343	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	379	834	0	ENST00000372470.3:c.1808C>G	p.Pro603Arg	p.P603R	ENST00000372470	NM_005373.2	603	cCc/cGc																																																																															
MGA	23269	MSKCC	GRCh37	15	42058627	42058627	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	209	413	0	ENST00000219905.7:c.8347C>G	p.Leu2783Val	p.L2783V	ENST00000219905	NM_001164273.1	2783	Ctc/Gtc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016549	12016549	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0019024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	149	347	0	ENST00000353533.5:c.686-1G>A		p.X229_splice	ENST00000353533	NM_003010.3	229																																																																																
DNAJB1	3337	MSKCC	GRCh37	19	14629005	14629005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	293	682	1	ENST00000254322.2:c.157G>A	p.Asp53Asn	p.D53N	ENST00000254322	NM_006145.1	53	Gac/Aac																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99185125	99185125	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	165	368	0	ENST00000074304.5:c.2527G>C	p.Glu843Gln	p.E843Q	ENST00000074304	NM_001134224.1	843	Gag/Cag																																																																															
BAP1	8314	MSKCC	GRCh37	3	52443736	52443736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	327	754	0	ENST00000460680.1:c.61G>A	p.Asp21Asn	p.D21N	ENST00000460680	NM_004656.3	21	Gat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916640	178916666	+	inframe_deletion	In_Frame_Del	DEL	ACTGTGGGGCATCCACTTGATGCCCCC	ACTGTGGGGCATCCACTTGATGCCCCC	-			P-0019024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	190	574	0	ENST00000263967.3:c.28_54del	p.Leu10_Pro18del	p.L10_P18del	ENST00000263967	NM_006218.2	9	gaACTGTGGGGCATCCACTTGATGCCCCCa/gaa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	297	590	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	358	829	0	ENST00000346208.3:c.1220_1221insA	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcAg																																																																															
PARP1	142	MSKCC	GRCh37	1	226552831	226552838	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCTTCA	CGCCTTCA	-			P-0019025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	541	604	0	ENST00000366794.5:c.2523_2530del	p.Glu842MetfsTer8	p.E842Mfs*8	ENST00000366794	NM_001618.3	841	cgTGAAGGCGaa/cgaa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944121	71944123	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GAG	GAG	-			P-0019025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	344	700	2	ENST00000298229.2:c.1960_1962del	p.Glu654del	p.E654del	ENST00000298229	NM_001567.3	652	GAG/-																																																																															
RB1	5925	MSKCC	GRCh37	13	49039430	49039430	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0019025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	362	699	0	ENST00000267163.4:c.2415T>G	p.Tyr805Ter	p.Y805*	ENST00000267163	NM_000321.2	805	taT/taG																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779590	3779590	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0019025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	454	870	0	ENST00000262367.5:c.5458A>T	p.Lys1820Ter	p.K1820*	ENST00000262367	NM_004380.2	1820	Aag/Tag																																																																															
CIC	23152	MSKCC	GRCh37	19	42795109	42795109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	457	850	1	ENST00000575354.2:c.2189C>T	p.Ser730Leu	p.S730L	ENST00000575354	NM_015125.3	730	tCg/tTg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871044	12871044	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	145	565	0	ENST00000228872.4:c.275delC	p.Pro92ArgfsTer27	p.P92Rfs*27	ENST00000228872	NM_004064.3	91	Ccc/cc																																																																															
PGR	5241	MSKCC	GRCh37	11	100999429	100999429	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs191163476		P-0019030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	267	1119	0	ENST00000325455.5:c.373G>A	p.Gly125Arg	p.G125R	ENST00000325455	NM_001202474.3	125	Ggg/Agg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26978189	26978189	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	181	920	0	ENST00000381527.3:c.1366C>T	p.Gln456Ter	p.Q456*	ENST00000381527	NM_001260.1	456	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0019033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	278	1140	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591555	48591945	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAAAAAAAAAAATTAGTGTTTTAAGAACAGTGCTAAGTACTGAGCTAGAAAATAGAAGACATGGAAATTCCTACCTTTTAATGCATTATGTTATTTTAATCCAGTTGTTTTGGGTGCATTACATTTCCATCTCCCCTCCCTTTACCCTTTCTTTTAGGAAAAACTGTGTTGTGGAGTGCAAGTGAAAGCCTTATATCTTTCTCATGGGAGGATGTTCTTTCCCATTTATTTCCTATAGCTCCTGAGTATTGGTGTTCCATTGCTTACTTTGAAATGGATGTTCAGGTAGGAGAGACATTTAAGGTTCCTTCAAGCTGCCCTATTGTTACTGTTGATGGATACGTGGACCCTTCTGGAGGAGATCGCTTTTGTTTGGGTCAACTCTCCAATG	TAAAAAAAAAAATTAGTGTTTTAAGAACAGTGCTAAGTACTGAGCTAGAAAATAGAAGACATGGAAATTCCTACCTTTTAATGCATTATGTTATTTTAATCCAGTTGTTTTGGGTGCATTACATTTCCATCTCCCCTCCCTTTACCCTTTCTTTTAGGAAAAACTGTGTTGTGGAGTGCAAGTGAAAGCCTTATATCTTTCTCATGGGAGGATGTTCTTTCCCATTTATTTCCTATAGCTCCTGAGTATTGGTGTTCCATTGCTTACTTTGAAATGGATGTTCAGGTAGGAGAGACATTTAAGGTTCCTTCAAGCTGCCCTATTGTTACTGTTGATGGATACGTGGACCCTTCTGGAGGAGATCGCTTTTGTTTGGGTCAACTCTCCAATG	-			P-0019033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	27	4	0	ENST00000342988.3:c.956-237_1109del		p.X319_splice	ENST00000342988	NM_005359.5	319																																																																																
APC	324	MSKCC	GRCh37	5	112174658	112174658	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	94	493	0	ENST00000257430.4:c.3367C>T	p.Gln1123Ter	p.Q1123*	ENST00000257430	NM_000038.5	1123	Caa/Taa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120620	115120620	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	183	1009	0	ENST00000257566.3:c.386G>T	p.Gly129Val	p.G129V	ENST00000257566	NM_016569.3	129	gGa/gTa																																																																															
MSI1	4440	MSKCC	GRCh37	12	120794801	120794801	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1170	91	1037	2	ENST00000257552.2:c.556C>A	p.Pro186Thr	p.P186T	ENST00000257552	NM_002442.3	186	Cca/Aca																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557692	21557692	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	193	768	0	ENST00000382592.4:c.2153del	p.Asp718AlafsTer27	p.D718Afs*27	ENST00000382592	NM_014572.2	718	gAc/gc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610427	10610427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	162	709	0	ENST00000171111.5:c.283G>T	p.Ala95Ser	p.A95S	ENST00000171111	NM_203500.1	95	Gcc/Tcc																																																																															
AXL	558	MSKCC	GRCh37	19	41762511	41762511	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200253980		P-0019035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	57	363	0	ENST00000301178.4:c.2191G>A	p.Asp731Asn	p.D731N	ENST00000301178	NM_021913.4	731	Gat/Aat																																																																															
CIC	23152	MSKCC	GRCh37	19	42793442	42793442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	125	565	0	ENST00000575354.2:c.1245del	p.Pro417ArgfsTer18	p.P417Rfs*18	ENST00000575354	NM_015125.3	415	cGg/cg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133854	55133854	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	119	560	0	ENST00000257290.5:c.1067T>A	p.Leu356Gln	p.L356Q	ENST00000257290	NM_006206.4	356	cTg/cAg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751864	57751864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	95	496	1	ENST00000274289.3:c.1373G>T	p.Ser458Ile	p.S458I	ENST00000274289	NM_006622.3	458	aGc/aTc																																																																															
FYN	2534	MSKCC	GRCh37	6	111983028	111983028	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	83	878	0	ENST00000368678.4:c.1519C>A	p.Arg507Ser	p.R507S	ENST00000368678		507	Cgc/Agc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513299	106513299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	113	526	1	ENST00000359195.3:c.2203C>A	p.Gln735Lys	p.Q735K	ENST00000359195	NM_002649.2	735	Caa/Aaa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239616	53239616	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	133	344	0	ENST00000375401.3:c.1726del	p.Leu576SerfsTer83	p.L576Sfs*83	ENST00000375401	NM_004187.3	576	Ctc/tc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0019037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	217	824	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0019037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	76	426	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	166	525	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	93	286	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793663		P-0019040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	248	891	2	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645412	67645412	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	161	616	0	ENST00000264010.4:c.677A>G	p.Tyr226Cys	p.Y226C	ENST00000264010	NM_006565.3	226	tAc/tGc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021828	71021828	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0019040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	76	265	0	ENST00000318789.4:c.1531-1G>C		p.X511_splice	ENST00000318789	NM_032682.5	511																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56160646	56160656	+	frameshift_variant	Frame_Shift_Del	DEL	GTGTTAACAAA	GTGTTAACAAA	-			P-0019040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	124	584	0	ENST00000399503.3:c.923_933del	p.Val308AspfsTer14	p.V308Dfs*14	ENST00000399503	NM_005921.1	307	cGTGTTAACAAA/c																																																																															
RXRA	6256	MSKCC	GRCh37	9	137328454	137328454	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	206	793	0	ENST00000481739.1:c.1383G>C	p.Met461Ile	p.M461I	ENST00000481739	NM_002957.4	461	atG/atC																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929252	44929252	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	214	948	0	ENST00000377967.4:c.2352G>C	p.Leu784Phe	p.L784F	ENST00000377967	NM_021140.2	784	ttG/ttC																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177830	56177831	+	frameshift_variant	Frame_Shift_Ins	INS	TC	TC	GAA			P-0019040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	105	524	0	ENST00000399503.3:c.2803_2804delinsGAA	p.Ser935GlufsTer6	p.S935Efs*6	ENST00000399503	NM_005921.1	935	TCa/GAAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	124	828	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101300	27101300	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	176	810	1	ENST00000324856.7:c.4582C>T	p.Arg1528Ter	p.R1528*	ENST00000324856	NM_006015.4	1528	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0019041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	186	1104	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
TGFBR2	7048	MSKCC	GRCh37	3	30713430	30713450	+	inframe_deletion	In_Frame_Del	DEL	AAGGTCGCTTTGCTGAGGTCT	AAGGTCGCTTTGCTGAGGTCT	-			P-0019041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	139	603	0	ENST00000359013.4:c.831_851del	p.Lys277_Tyr284delinsAsn	p.K277_Y284delinsN	ENST00000359013	NM_001024847.2	277	aAAGGTCGCTTTGCTGAGGTCTat/aat																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156521	55156521	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	110	599	1	ENST00000257290.5:c.2922T>A	p.His974Gln	p.H974Q	ENST00000257290	NM_006206.4	974	caT/caA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061221	38061232	+	inframe_deletion	In_Frame_Del	DEL	GTTCTCGAACAT	GTTCTCGAACAT	-			P-0019043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	58	645	0	ENST00000250448.2:c.757_768del	p.Met253_Asn256del	p.M253_N256del	ENST00000250448	NM_004496.3	253	ATGTTCGAGAAC/-																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425869	49425869	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0019043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	37	678	0	ENST00000301067.7:c.12619A>T	p.Lys4207Ter	p.K4207*	ENST00000301067	NM_003482.3	4207	Aaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	94	1075	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0019044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	20	599	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0019044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	92	1087	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918992	50918992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	50	902	0	ENST00000440232.2:c.2729G>A	p.Arg910Gln	p.R910Q	ENST00000440232	NM_002691.3	910	cGg/cAg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948520	71948520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	37	1267	1	ENST00000298229.2:c.3232C>T	p.Arg1078Trp	p.R1078W	ENST00000298229	NM_001567.3	1078	Cgg/Tgg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922954	44922954	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	46	1114	0	ENST00000377967.4:c.1817del	p.Asn606ThrfsTer19	p.N606Tfs*19	ENST00000377967	NM_021140.2	605	ggA/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	79	784	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68855984	68855984	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	108	887	1	ENST00000261769.5:c.1792C>T	p.Arg598Ter	p.R598*	ENST00000261769	NM_004360.3	598	Cga/Tga																																																																															
CBFB	865	MSKCC	GRCh37	16	67100663	67100663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	66	603	0	ENST00000412916.2:c.361G>A	p.Gly121Ser	p.G121S	ENST00000412916		121	Ggt/Agt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	18	868	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603023	48603023	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	14	370	0	ENST00000342988.3:c.1324C>T	p.Gln442Ter	p.Q442*	ENST00000342988	NM_005359.5	442	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	DEL	A	A	-			P-0019060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	18	582	1	ENST00000269305.4:c.559+2del		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	98	643	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578213	7578214	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-	rs1131691030		P-0019062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	440	1016	1	ENST00000269305.4:c.635_636del	p.Phe212SerfsTer3	p.F212Sfs*3	ENST00000269305	NM_001126112.2	212	tTT/t																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0019062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	107	527	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3794901	3794901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	128	611	0	ENST00000262367.5:c.3976G>A	p.Ala1326Thr	p.A1326T	ENST00000262367	NM_004380.2	1326	Gct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0019065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	180	815	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0019065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	67	459	1	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	81	385	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11189847	11189847	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	107	631	0	ENST00000361445.4:c.5662T>A	p.Phe1888Ile	p.F1888I	ENST00000361445	NM_004958.3	1888	Ttc/Atc																																																																															
TET1	80312	MSKCC	GRCh37	10	70333889	70333889	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	98	544	2	ENST00000373644.4:c.1794G>T	p.Gln598His	p.Q598H	ENST00000373644	NM_030625.2	598	caG/caT																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028672	12028672	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	80	526	0	ENST00000353533.5:c.875G>C	p.Ser292Thr	p.S292T	ENST00000353533	NM_003010.3	292	aGt/aCt																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453387	40453387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	164	920	0	ENST00000345506.4:c.1084G>A	p.Val362Met	p.V362M	ENST00000345506	NM_003152.3	362	Gtg/Atg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119969	70119969	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	59	324	0	ENST00000245479.2:c.972del	p.Ala325ArgfsTer58	p.A325Rfs*58	ENST00000245479	NM_000346.3	324	aCc/ac																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120000	70120001	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGA			P-0019065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	43	142	0	ENST00000245479.2:c.1005_1008dup	p.Ser337AspfsTer242	p.S337Dfs*242	ENST00000245479	NM_000346.3	334	-/TGGA																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52663015	52663015	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	95	522	0	ENST00000394830.3:c.1338T>A	p.Asp446Glu	p.D446E	ENST00000394830	NM_018313.4	446	gaT/gaA																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	147	800	2	ENST00000380152.3:c.5351delA	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	61	500	2	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955204	17955204	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145500023		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	173	1100	3	ENST00000458235.1:c.23C>T	p.Thr8Met	p.T8M	ENST00000458235	NM_000215.3	8	aCg/aTg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467177	99467177	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149217017		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	124	632	0	ENST00000268035.6:c.2558C>T	p.Pro853Leu	p.P853L	ENST00000268035	NM_000875.3	853	cCg/cTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	208	656	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	125	834	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303028	15303028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	140	945	4	ENST00000263388.2:c.422G>A	p.Arg141His	p.R141H	ENST00000263388	NM_000435.2	141	cGc/cAc																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	68	328	0	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750818	57750818	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	104	673	2	ENST00000274289.3:c.1786C>T	p.Arg596Ter	p.R596*	ENST00000274289	NM_006622.3	596	Cga/Tga																																																																															
TSC1	7248	MSKCC	GRCh37	9	135779180	135779180	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200827913		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	87	540	0	ENST00000298552.3:c.2066G>A	p.Arg689His	p.R689H	ENST00000298552	NM_001162426.1	689	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	99	844	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129329	152129329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	82	607	2	ENST00000206249.3:c.287del	p.Gly96ValfsTer13	p.G96Vfs*13	ENST00000206249	NM_000125.3	94	ctG/ct																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	125	815	6	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143993	11143993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	102	658	0	ENST00000344626.4:c.3574C>T	p.Arg1192Cys	p.R1192C	ENST00000344626	NM_003072.3	1192	Cgc/Tgc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	172	586	1	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																															
POLE	5426	MSKCC	GRCh37	12	133219579	133219579	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs542430685		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	70	442	0	ENST00000320574.5:c.4555C>T	p.Arg1519Cys	p.R1519C	ENST00000320574	NM_006231.2	1519	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	124	565	1	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	143	890	2	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	107	624	1	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502187	157502187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	74	555	2	ENST00000346085.5:c.3220G>A	p.Asp1074Asn	p.D1074N	ENST00000346085	NM_020732.3	1074	Gac/Aac																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772950	135772951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs118203724		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	90	564	0	ENST00000298552.3:c.2672dup	p.Asn891LysfsTer13	p.N891Kfs*13	ENST00000298552	NM_001162426.1	891	aac/aaAc																																																																															
CIC	23152	MSKCC	GRCh37	19	42793502	42793502	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755293924		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	155	771	0	ENST00000575354.2:c.1304C>T	p.Thr435Met	p.T435M	ENST00000575354	NM_015125.3	435	aCg/aTg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513282	44513287	+	inframe_deletion	In_Frame_Del	DEL	CCACCG	CCACCG	-			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	136	1024	0	ENST00000291552.4:c.648_653delCGGTGG	p.Gly222_Gly223del	p.G222_G223del	ENST00000291552	NM_006758.2	216	ggCGGTGGt/ggt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258683	16258683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	114	788	0	ENST00000375759.3:c.5948C>T	p.Ser1983Leu	p.S1983L	ENST00000375759	NM_015001.2	1983	tCg/tTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163277	47163277	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149265978		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	116	706	1	ENST00000409792.3:c.2849G>A	p.Arg950His	p.R950H	ENST00000409792	NM_014159.6	950	cGt/cAt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	115	824	3	ENST00000261937.6:c.89dupC	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135079	11135079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	137	941	0	ENST00000344626.4:c.3046G>A	p.Val1016Met	p.V1016M	ENST00000344626	NM_003072.3	1016	Gtg/Atg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220015	5220015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	168	847	0	ENST00000357368.4:c.3700C>T	p.Arg1234Trp	p.R1234W	ENST00000357368	NM_002850.3	1234	Cgg/Tgg																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551952	150551952	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	145	681	4	ENST00000369026.2:c.55delG	p.Ala19ProfsTer30	p.A19Pfs*30	ENST00000369026	NM_021960.4	19	Gcc/cc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187374	32187374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	196	601	0	ENST00000375023.3:c.1505C>T	p.Pro502Leu	p.P502L	ENST00000375023	NM_004557.3	502	cCg/cTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916824	178916824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201269904		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	164	918	0	ENST00000263967.3:c.211G>A	p.Val71Ile	p.V71I	ENST00000263967	NM_006218.2	71	Gta/Ata																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244020	5244020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	130	690	2	ENST00000357368.4:c.1462G>A	p.Val488Met	p.V488M	ENST00000357368	NM_002850.3	488	Gtg/Atg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	136	867	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	270	1002	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	118	776	5	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231610	5231611	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	28	197	1	ENST00000357368.4:c.1865dup	p.Gln623SerfsTer4	p.Q623Sfs*4	ENST00000357368	NM_002850.3	622	cct/ccCt																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46740336	46740336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	126	740	0	ENST00000371975.4:c.1816C>T	p.Arg606Trp	p.R606W	ENST00000371975	NM_003579.3	606	Cgg/Tgg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	305	963	6	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	156	905	6	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62324609	62324609	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139221232		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	103	720	0	ENST00000508582.2:c.3037C>T	p.Arg1013Trp	p.R1013W	ENST00000508582		1013	Cgg/Tgg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775614	9775614	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766440014		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	82	552	1	ENST00000377346.4:c.157G>A	p.Ala53Thr	p.A53T	ENST00000377346	NM_005026.3	53	Gcc/Acc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775955	9775955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	117	785	2	ENST00000377346.4:c.419G>A	p.Arg140His	p.R140H	ENST00000377346	NM_005026.3	140	cGc/cAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11292555	11292555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	134	872	0	ENST00000361445.4:c.2452G>A	p.Asp818Asn	p.D818N	ENST00000361445	NM_004958.3	818	Gat/Aat																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202886	16202886	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	117	647	0	ENST00000375759.3:c.598del	p.Arg200AspfsTer166	p.R200Dfs*166	ENST00000375759	NM_015001.2	198	gaC/ga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259442	16259442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	110	647	0	ENST00000375759.3:c.6707C>A	p.Pro2236His	p.P2236H	ENST00000375759	NM_015001.2	2236	cCt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105577	27105577	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	121	598	0	ENST00000324856.7:c.5188A>G	p.Ile1730Val	p.I1730V	ENST00000324856	NM_006015.4	1730	Att/Gtt																																																																															
SESN2	83667	MSKCC	GRCh37	1	28595739	28595739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	128	879	0	ENST00000253063.3:c.136G>A	p.Ala46Thr	p.A46T	ENST00000253063	NM_031459.4	46	Gcc/Acc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246021916	246021916	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	130	782	0	ENST00000388985.4:c.958C>A	p.Leu320Ile	p.L320I	ENST00000388985		320	Ctt/Att																																																																															
RET	5979	MSKCC	GRCh37	10	43600496	43600496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	92	727	1	ENST00000355710.3:c.722C>T	p.Ala241Val	p.A241V	ENST00000355710	NM_020975.4	241	gCc/gTc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104375030	104375030	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs79299301		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	138	677	2	ENST00000369902.3:c.1028G>A	p.Arg343His	p.R343H	ENST00000369902	NM_016169.3	343	cGc/cAc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136996	64136996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	164	822	1	ENST00000334205.4:c.1507G>A	p.Glu503Lys	p.E503K	ENST00000334205	NM_003942.2	503	Gag/Aag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940586	71940586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	106	745	6	ENST00000298229.2:c.737G>A	p.Arg246His	p.R246H	ENST00000298229	NM_001567.3	246	cGc/cAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71945654	71945654	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	108	631	0	ENST00000298229.2:c.2410C>T	p.Pro804Ser	p.P804S	ENST00000298229	NM_001567.3	804	Ccc/Tcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49418727	49418727	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	77	466	0	ENST00000301067.7:c.15787G>A	p.Val5263Met	p.V5263M	ENST00000301067	NM_003482.3	5263	Gtg/Atg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864423	57864423	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	116	768	0	ENST00000228682.2:c.1903del	p.Val635SerfsTer84	p.V635Sfs*84	ENST00000228682	NM_005269.2	634	Ggg/gg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111884833	111884833	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	43	390	0	ENST00000341259.2:c.922C>T	p.Arg308Ter	p.R308*	ENST00000341259	NM_005475.2	308	Cga/Tga																																																																															
RB1	5925	MSKCC	GRCh37	13	48939033	48939033	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	91	484	0	ENST00000267163.4:c.869del	p.Asn290MetfsTer11	p.N290Mfs*11	ENST00000267163	NM_000321.2	289	Aaa/aa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129103	2129103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	157	947	0	ENST00000219476.3:c.3037G>A	p.Asp1013Asn	p.D1013N	ENST00000219476	NM_000548.3	1013	Gat/Aat																																																																															
SLX4	84464	MSKCC	GRCh37	16	3634842	3634842	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	173	878	0	ENST00000294008.3:c.4667C>A	p.Pro1556His	p.P1556H	ENST00000294008	NM_032444.2	1556	cCc/cAc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639273	3639273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	136	877	0	ENST00000294008.3:c.4366C>T	p.Arg1456Cys	p.R1456C	ENST00000294008	NM_032444.2	1456	Cgc/Tgc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640626	3640626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	188	1083	2	ENST00000294008.3:c.3013G>A	p.Glu1005Lys	p.E1005K	ENST00000294008	NM_032444.2	1005	Gag/Aag																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30129436	30129436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	52	906	0	ENST00000263025.4:c.592A>G	p.Thr198Ala	p.T198A	ENST00000263025	NM_002746.2	198	Acc/Gcc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782296	56782296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	119	656	0	ENST00000308159.5:c.137G>A	p.Arg46His	p.R46H	ENST00000308159	NM_014669.4	46	cGt/cAt																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108280	8108280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	105	749	2	ENST00000585124.1:c.944G>A	p.Arg315Gln	p.R315Q	ENST00000585124	NM_004217.3	315	cGg/cAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210565	5210565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	94	693	1	ENST00000357368.4:c.5402G>A	p.Arg1801His	p.R1801H	ENST00000357368	NM_002850.3	1801	cGc/cAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170793	11170793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	148	705	0	ENST00000344626.4:c.4841G>A	p.Arg1614Gln	p.R1614Q	ENST00000344626	NM_003072.3	1614	cGg/cAg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17384762	17384762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	176	1022	2	ENST00000359435.4:c.394G>A	p.Val132Met	p.V132M	ENST00000359435	NM_001033549.1	132	Gtg/Atg																																																																															
CIC	23152	MSKCC	GRCh37	19	42797180	42797180	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	183	1087	0	ENST00000575354.2:c.3542A>G	p.Lys1181Arg	p.K1181R	ENST00000575354	NM_015125.3	1181	aAg/aGg																																																																															
BBC3	27113	MSKCC	GRCh37	19	47729957	47729957	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	58	314	0	ENST00000449228.1:c.432G>T	p.Gln144His	p.Q144H	ENST00000449228	NM_001127240.2	144	caG/caT																																																																															
POLD1	5424	MSKCC	GRCh37	19	50920347	50920349	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	130	946	1	ENST00000440232.2:c.3115_3117del	p.Lys1039del	p.K1039del	ENST00000440232	NM_002691.3	1038	cAGAag/cag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989591	212989592	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	25	452	0	ENST00000342788.4:c.119_120delCT	p.Ser40Ter	p.S40*	ENST00000342788	NM_005235.2	40	tCT/t																																																																															
BARD1	580	MSKCC	GRCh37	2	215645382	215645382	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs377153250		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	108	713	2	ENST00000260947.4:c.1216C>T	p.Arg406Ter	p.R406*	ENST00000260947	NM_000465.2	406	Cga/Tga																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279760	46279760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	92	534	0	ENST00000371998.3:c.3686G>A	p.Arg1229His	p.R1229H	ENST00000371998		1229	cGc/cAc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119585471	119585471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	108	640	1	ENST00000316626.5:c.914C>T	p.Ser305Leu	p.S305L	ENST00000316626		305	tCg/tTg																																																																															
ATR	545	MSKCC	GRCh37	3	142176560	142176560	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151162347		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	143	907	1	ENST00000350721.4:c.7541G>A	p.Arg2514His	p.R2514H	ENST00000350721	NM_001184.3	2514	cGc/cAc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751198	57751198	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	72	486	2	ENST00000274289.3:c.1669C>A	p.Pro557Thr	p.P557T	ENST00000274289	NM_006622.3	557	Cca/Aca																																																																															
MSH3	4437	MSKCC	GRCh37	5	79950730	79950730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	36	136	0	ENST00000265081.6:c.184G>T	p.Ala62Ser	p.A62S	ENST00000265081	NM_002439.4	62	Gcg/Tcg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707758	176707758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	141	740	1	ENST00000439151.2:c.5815C>T	p.Arg1939Cys	p.R1939C	ENST00000439151	NM_022455.4	1939	Cgc/Tgc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670564	30670564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	90	756	0	ENST00000376406.3:c.5956G>A	p.Ala1986Thr	p.A1986T	ENST00000376406	NM_014641.2	1986	Gca/Aca																																																																															
STK19	8859	MSKCC	GRCh37	6	31948259	31948259	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	265	877	1	ENST00000375331.2:c.835C>T	p.Arg279Ter	p.R279*	ENST00000375331	NM_004197.1	279	Cga/Tga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32164701	32164701	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	158	913	0	ENST00000375023.3:c.5200+1del		p.X1734_splice	ENST00000375023	NM_004557.3	1734																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32190345	32190345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	80	784	0	ENST00000375023.3:c.394N>T	p.Arg132Cys	p.R132C	ENST00000375023	NM_004557.3	132	Cgc/Tgc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798457	32798457	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	191	925	2	ENST00000374899.4:c.1399delG	p.Val467LeufsTer2	p.V467Lfs*2	ENST00000374899	NM_018833.2	467	Gtt/tt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287248	33287248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148540788		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	132	759	1	ENST00000374542.5:c.1849G>A	p.Val617Ile	p.V617I	ENST00000374542	NM_001141970.1	617	Gtc/Atc																																																																															
BRAF	673	MSKCC	GRCh37	7	140439694	140439694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	101	490	3	ENST00000288602.6:c.2045G>A	p.Arg682Gln	p.R682Q	ENST00000288602	NM_004333.4	682	cGg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836816	151836816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	143	781	0	ENST00000262189.6:c.14404G>A	p.Gly4802Arg	p.G4802R	ENST00000262189	NM_170606.2	4802	Ggg/Agg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874752	151874752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	68	386	1	ENST00000262189.6:c.7786C>T	p.Arg2596Trp	p.R2596W	ENST00000262189	NM_170606.2	2596	Cgg/Tgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878079	151878079	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202108375		P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	57	420	0	ENST00000262189.6:c.6866G>A	p.Arg2289His	p.R2289H	ENST00000262189	NM_170606.2	2289	cGt/cAt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141572588	141572588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	124	703	0	ENST00000220592.5:c.482C>T	p.Ala161Val	p.A161V	ENST00000220592	NM_012154.3	161	gCc/gTc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738792	145738792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	174	1063	1	ENST00000428558.2:c.2273G>A	p.Arg758Gln	p.R758Q	ENST00000428558	NM_004260.3	758	cGa/cAa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231358	98231358	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	111	625	0	ENST00000331920.6:c.1925delC	p.Pro642HisfsTer51	p.P642Hfs*51	ENST00000331920	NM_000264.3	642	cCa/ca																																																																															
ABL1	25	MSKCC	GRCh37	9	133753849	133753849	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	152	771	0	ENST00000318560.5:c.1318T>C	p.Tyr440His	p.Y440H	ENST00000318560	NM_005157.4	440	Tac/Cac																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222168	53222168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	112	294	0	ENST00000375401.3:c.4664C>T	p.Pro1555Leu	p.P1555L	ENST00000375401	NM_004187.3	1555	cCg/cTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76952090	76952092	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	121	328	0	ENST00000373344.5:c.343_345del	p.Asp115del	p.D115del	ENST00000373344	NM_000489.3	115	GAT/-																																																																															
SRC	6714	MSKCC	GRCh37	20	36030943	36030944	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0019076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	124	781	0	ENST00000358208.4:c.1223_1224del	p.Phe408TrpfsTer7	p.F408Wfs*7	ENST00000358208		408	TTt/t																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0019082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1246	878	1079	5	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	642	1088	3	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187483	32187483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1528	138	854	1	ENST00000375023.3:c.1396G>A	p.Gly466Ser	p.G466S	ENST00000375023	NM_004557.3	466	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0019083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	105	919	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0019084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	57	921	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412683	139412683	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	59	988	10	ENST00000277541.6:c.1161C>G	p.Cys387Trp	p.C387W	ENST00000277541	NM_017617.3	387	tgC/tgG																																																																															
SDHC	6391	MSKCC	GRCh37	1	161326560	161326572	+	frameshift_variant	Frame_Shift_Del	DEL	TGATCCACACAGC	TGATCCACACAGC	AGA			P-0019084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	85	419	1	ENST00000367975.2:c.335_347delinsAGA	p.Leu112GlnfsTer21	p.L112Qfs*21	ENST00000367975	NM_003001.3	112	cTGATCCACACAGCt/cAGAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	271	1014	3	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735470	40735470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	198	1046	1	ENST00000373198.4:c.3403G>A	p.Val1135Met	p.V1135M	ENST00000373198	NM_133170.3	1135	Gtg/Atg																																																																															
RB1	5925	MSKCC	GRCh37	13	48942685	48942685	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913301		P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	310	707	0	ENST00000267163.4:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000267163	NM_000321.2	358	Cga/Tga																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933718	36933718	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	238	980	3	ENST00000361632.4:c.1681C>A	p.His561Asn	p.H561N	ENST00000361632		561	Cac/Aac																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120506386	120506386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	227	873	1	ENST00000256646.2:c.1726C>T	p.Pro576Ser	p.P576S	ENST00000256646	NM_024408.3	576	Ccc/Tcc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857593	9857593	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	116	541	0	ENST00000330684.3:c.3808G>T	p.Asp1270Tyr	p.D1270Y	ENST00000330684	NM_001134407.1	1270	Gac/Tac																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783709	50783709	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	199	1109	0	ENST00000398568.2:c.100C>T	p.Gln34Ter	p.Q34*	ENST00000398568	NM_001042412.1	34	Caa/Taa																																																																															
JAK3	3718	MSKCC	GRCh37	19	17948824	17948824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	248	1094	0	ENST00000458235.1:c.1618C>T	p.Arg540Cys	p.R540C	ENST00000458235	NM_000215.3	540	Cgc/Tgc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17954670	17954670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	265	1134	5	ENST00000458235.1:c.224C>A	p.Thr75Lys	p.T75K	ENST00000458235	NM_000215.3	75	aCg/aAg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119582379	119582379	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	126	454	0	ENST00000316626.5:c.1022G>C	p.Arg341Pro	p.R341P	ENST00000316626		341	cGa/cCa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117638351	117638351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	133	747	0	ENST00000368508.3:c.6090G>T	p.Glu2030Asp	p.E2030D	ENST00000368508	NM_002944.2	2030	gaG/gaT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877199	151877200	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	123	481	0	ENST00000262189.6:c.7161dup	p.Arg2388ThrfsTer2	p.R2388Tfs*2	ENST00000262189	NM_170606.2	2387	-/A																																																																															
AR	367	MSKCC	GRCh37	X	66943676	66943676	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	207	1048	0	ENST00000374690.3:c.2756C>A	p.Thr919Asn	p.T919N	ENST00000374690	NM_000044.3	919	aCc/aAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0019087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	520	973	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579871	7579872	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	103	1001	0	ENST00000269305.4:c.41dup	p.Ser15GlufsTer14	p.S15Efs*14	ENST00000269305	NM_001126112.2	14	ctg/ctTg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950760	38950760	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	60	520	0	ENST00000357387.3:c.3190A>G	p.Ile1064Val	p.I1064V	ENST00000357387	NM_152756.3	1064	Atc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	303	966	0	ENST00000269305.4:c.472C>G	p.Arg158Gly	p.R158G	ENST00000269305	NM_001126112.2	158	Cgc/Ggc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912177	114912177	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	210	643	1	ENST00000543371.1:c.1247G>T	p.Gly416Val	p.G416V	ENST00000543371	NM_001198531.1	416	gGc/gTc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59876545	59876545	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	179	680	0	ENST00000259008.2:c.1256G>T	p.Arg419Leu	p.R419L	ENST00000259008	NM_032043.2	419	cGg/cTg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225342998	225343000	+	inframe_deletion	In_Frame_Del	DEL	GTC	GTC	-			P-0019090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	217	883	0	ENST00000264414.4:c.2092_2094del	p.Asp698del	p.D698del	ENST00000264414	NM_003590.4	698	GAC/-																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151871304	151871304	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	189	615	0	ENST00000262189.6:c.9286A>G	p.Ile3096Val	p.I3096V	ENST00000262189	NM_170606.2	3096	Ata/Gta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	200	797	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0019094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	156	1017	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45860581	45860581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	132	1305	1	ENST00000391945.4:c.1426G>A	p.Val476Ile	p.V476I	ENST00000391945	NM_000400.3	476	Gtc/Atc																																																																															
ATM	472	MSKCC	GRCh37	11	108153607	108153607	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0019094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	40	326	0	ENST00000278616.4:c.3746+1G>C		p.X1249_splice	ENST00000278616	NM_000051.3	1249																																																																																
APC	324	MSKCC	GRCh37	5	112174823	112174823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	66	586	0	ENST00000257430.4:c.3532G>A	p.Asp1178Asn	p.D1178N	ENST00000257430	NM_000038.5	1178	Gat/Aat																																																																															
CDK6	1021	MSKCC	GRCh37	7	92404120	92404120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	89	766	0	ENST00000265734.4:c.259C>T	p.Arg87Ter	p.R87*	ENST00000265734	NM_001259.6	87	Cga/Tga																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738240	145738240	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	75	1063	0	ENST00000428558.2:c.2745G>C	p.Met915Ile	p.M915I	ENST00000428558	NM_004260.3	915	atG/atC																																																																															
TEK	7010	MSKCC	GRCh37	9	27203097	27203097	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1353	112	1022	0	ENST00000380036.4:c.2189T>C	p.Val730Ala	p.V730A	ENST00000380036	NM_000459.3	730	gTg/gCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	137	708	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	182	521	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873756	35873756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	165	558	1	ENST00000216797.5:c.95G>A	p.Ser32Asn	p.S32N	ENST00000216797	NM_020529.2	32	aGc/aAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521986	157521986	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	196	502	0	ENST00000346085.5:c.4258C>T	p.Gln1420Ter	p.Q1420*	ENST00000346085	NM_020732.3	1420	Cag/Tag																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942153	81942153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	222	630	0	ENST00000359376.3:c.1690C>T	p.Arg564Trp	p.R564W	ENST00000359376	NM_002661.3	564	Cgg/Tgg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18280073	18280073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	61	137	0	ENST00000222254.8:c.2156C>T	p.Pro719Leu	p.P719L	ENST00000222254	NM_005027.3	719	cCg/cTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912786	50912786	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61751955		P-0019096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	97	675	0	ENST00000440232.2:c.2017G>A	p.Glu673Lys	p.E673K	ENST00000440232	NM_002691.3	673	Gag/Aag																																																																															
KDR	3791	MSKCC	GRCh37	4	55962423	55962423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	71	602	1	ENST00000263923.4:c.2701C>T	p.Leu901Phe	p.L901F	ENST00000263923	NM_002253.2	901	Ctt/Ttt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56171021	56171021	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	40	244	0	ENST00000399503.3:c.1849G>C	p.Gly617Arg	p.G617R	ENST00000399503	NM_005921.1	617	Gga/Cga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	126	764	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	198	868	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032478	12032478	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	117	539	0	ENST00000353533.5:c.914T>G	p.Phe305Cys	p.F305C	ENST00000353533	NM_003010.3	305	tTt/tGt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11094972	11094972	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	167	972	0	ENST00000344626.4:c.146del	p.Pro49ArgfsTer45	p.P49Rfs*45	ENST00000344626	NM_003072.3	49	Ccg/cg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528596	8528596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	110	596	0	ENST00000356435.5:c.536G>T	p.Arg179Leu	p.R179L	ENST00000356435		179	cGa/cTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	325	715	2	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0019100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	308	883	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047995	180047995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	269	684	3	ENST00000261937.6:c.2180C>T	p.Ala727Val	p.A727V	ENST00000261937	NM_182925.4	727	gCg/gTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	202	445	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0019100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	265	894	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274801	123274801	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	39	657	2	ENST00000358487.5:c.1117C>A	p.Pro373Thr	p.P373T	ENST00000358487	NM_000141.4	373	Cca/Aca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485827	8485827	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	123	372	0	ENST00000356435.5:c.2990A>G	p.His997Arg	p.H997R	ENST00000356435		997	cAt/cGt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921543	39921543	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	269	743	0	ENST00000378444.4:c.4277T>C	p.Leu1426Pro	p.L1426P	ENST00000378444	NM_001123385.1	1426	cTa/cCa																																																																															
APC	324	MSKCC	GRCh37	5	112175191	112175192	+	synonymous_variant	Silent	DNP	TA	TA	CA			P-0019100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	179	349	0	ENST00000257430.4:c.3900delTinsC	p.AsnThr1300=	p.NT1300=	ENST00000257430	NM_000038.5	1300	aaTAcc/aaCAcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0019102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	268	752	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0019102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	85	608	1	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1221987	1221987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	136	810	4	ENST00000326873.7:c.902G>A	p.Arg301Gln	p.R301Q	ENST00000326873	NM_000455.4	301	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	108	447	1	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911548	114911548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	205	776	0	ENST00000543371.1:c.1066G>A	p.Ala356Thr	p.A356T	ENST00000543371	NM_001198531.1	356	Gca/Aca																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859609	57859610	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0019102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	160	646	0	ENST00000228682.2:c.671_672dup	p.Glu225ArgfsTer56	p.E225Rfs*56	ENST00000228682	NM_005269.2	221	-/GA																																																																															
CDK12	51755	MSKCC	GRCh37	17	37680994	37680994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	290	817	1	ENST00000447079.4:c.3163G>A	p.Val1055Ile	p.V1055I	ENST00000447079	NM_015083.1	1055	Gtt/Att																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40864884	40864884	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1197	108	837	1	ENST00000373198.4:c.2384C>A	p.Ser795Tyr	p.S795Y	ENST00000373198	NM_133170.3	795	tCc/tAc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120768	94120768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	38	718	1	ENST00000369303.4:c.283G>A	p.Ala95Thr	p.A95T	ENST00000369303	NM_004440.3	95	Gca/Aca																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450345	50450345	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	120	797	0	ENST00000331340.3:c.529C>G	p.Leu177Val	p.L177V	ENST00000331340	NM_006060.4	177	Ctc/Gtc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	720	574	9	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	272	651	1	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0019103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	381	807	3	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928089	178928089	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	426	697	9	ENST00000263967.3:c.1367T>G	p.Leu456Arg	p.L456R	ENST00000263967	NM_006218.2	456	cTg/cGg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573703	64573703	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0019103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	179	410	6	ENST00000337652.1:c.1064+1G>A		p.X355_splice	ENST00000337652	NM_130803.2	355																																																																																
ACVR1	90	MSKCC	GRCh37	2	158637097	158637097	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	225	626	1	ENST00000263640.3:c.83T>A	p.Val28Asp	p.V28D	ENST00000263640	NM_001105.4	28	gTc/gAc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	144	672	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932114	36932114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	42	532	0	ENST00000361632.4:c.2355G>T	p.Lys785Asn	p.K785N	ENST00000361632		785	aaG/aaT																																																																															
BARD1	580	MSKCC	GRCh37	2	215645784	215645792	+	inframe_deletion	In_Frame_Del	DEL	AACATTCAG	AACATTCAG	-			P-0019105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	129	672	0	ENST00000260947.4:c.806_814del	p.Ser269_Cys271del	p.S269_C271del	ENST00000260947	NM_000465.2	269	tCTGAATGTTtt/ttt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112515	115112516	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0019106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	179	828	0	ENST00000257566.3:c.1223_1224dup	p.Ser409AlafsTer224	p.S409Afs*224	ENST00000257566	NM_016569.3	408	-/GC																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115443	115115443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	174	766	0	ENST00000257566.3:c.883G>A	p.Asp295Asn	p.D295N	ENST00000257566	NM_016569.3	295	Gac/Aac																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098853	178098853	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	186	897	0	ENST00000397062.3:c.192G>T	p.Lys64Asn	p.K64N	ENST00000397062	NM_006164.4	64	aaG/aaT																																																																															
TEK	7010	MSKCC	GRCh37	9	27212867	27212867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	107	862	0	ENST00000380036.4:c.2849G>A	p.Arg950Gln	p.R950Q	ENST00000380036	NM_000459.3	950	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0019108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	487	755	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748428	162748429	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	AG			P-0019108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	206	549	2	ENST00000367921.3:c.2342_2343delinsAG	p.Phe781Ter	p.F781*	ENST00000367921	NM_006182.2	781	tTC/tAG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577093	7577093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	160	1081	0	ENST00000269305.4:c.845G>C	p.Arg282Pro	p.R282P	ENST00000269305	NM_001126112.2	282	cGg/cCg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572627	64572627	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	287	794	1	ENST00000337652.1:c.1244del	p.Phe415SerfsTer35	p.F415Sfs*35	ENST00000337652	NM_130803.2	415	tTc/tc																																																																															
ATM	472	MSKCC	GRCh37	11	108117824	108117824	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	133	608	1	ENST00000278616.4:c.1035del	p.Ile346LeufsTer3	p.I346Lfs*3	ENST00000278616	NM_000051.3	345	ttG/tt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440074	49440074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	589	828	1	ENST00000301067.7:c.4552G>C	p.Asp1518His	p.D1518H	ENST00000301067	NM_003482.3	1518	Gac/Cac																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864145	57864145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	190	671	2	ENST00000228682.2:c.1622G>A	p.Arg541His	p.R541H	ENST00000228682	NM_005269.2	541	cGc/cAc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162394333	162394333	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0019114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	128	454	0	ENST00000366898.1:c.734+1G>C		p.X245_splice	ENST00000366898	NM_004562.2	245																																																																																
SOX17	64321	MSKCC	GRCh37	8	55372376	55372376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1428	275	901	1	ENST00000297316.4:c.1066G>A	p.Gly356Arg	p.G356R	ENST00000297316	NM_022454.3	356	Ggg/Agg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112269	115112269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	71	103	1	ENST00000257566.3:c.1471G>A	p.Ala491Thr	p.A491T	ENST00000257566	NM_016569.3	491	Gcg/Acg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932255	39932255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	349	499	1	ENST00000378444.4:c.2344G>A	p.Asp782Asn	p.D782N	ENST00000378444	NM_001123385.1	782	Gac/Aac																																																																															
ATM	472	MSKCC	GRCh37	11	108172485	108172485	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	89	596	0	ENST00000278616.4:c.5288A>C	p.Tyr1763Ser	p.Y1763S	ENST00000278616	NM_000051.3	1763	tAt/tCt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3790400	3790400	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0019119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	192	420	0	ENST00000262367.5:c.4133G>C	p.Arg1378Pro	p.R1378P	ENST00000262367	NM_004380.2	1378	cGg/cCg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273944	10273944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	322	873	0	ENST00000330684.3:c.325G>T	p.Val109Leu	p.V109L	ENST00000330684	NM_001134407.1	109	Gta/Tta																																																																															
KDR	3791	MSKCC	GRCh37	4	55955541	55955541	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0019119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	155	783	0	ENST00000263923.4:c.3404T>G	p.Met1135Arg	p.M1135R	ENST00000263923	NM_002253.2	1135	aTg/aGg																																																																															
MSH3	4437	MSKCC	GRCh37	5	80160730	80160730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	162	657	0	ENST00000265081.6:c.3099G>T	p.Leu1033Phe	p.L1033F	ENST00000265081	NM_002439.4	1033	ttG/ttT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965566	93965566	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	163	626	1	ENST00000369303.4:c.2362G>T	p.Glu788Ter	p.E788*	ENST00000369303	NM_004440.3	788	Gaa/Taa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87570408	87570408	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	259	777	0	ENST00000277120.3:c.2148C>A	p.Asp716Glu	p.D716E	ENST00000277120		716	gaC/gaA																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30309894	30309894	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145910874		P-0019122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	84	579	2	ENST00000307677.4:c.128C>T	p.Ser43Leu	p.S43L	ENST00000307677	NM_138578.1	43	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	161	562	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs794727798		P-0019123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	152	484	2	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578396	+	inframe_deletion	In_Frame_Del	DEL	TGG	TGG	-			P-0019123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	170	525	0	ENST00000269305.4:c.534_536del	p.His179del	p.H179del	ENST00000269305	NM_001126112.2	178	caCCAt/cat																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396635	396635	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	81	514	0	ENST00000262320.3:c.391G>T	p.Asp131Tyr	p.D131Y	ENST00000262320	NM_003502.3	131	Gac/Tac																																																																															
AXL	558	MSKCC	GRCh37	19	41745082	41745082	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	119	474	0	ENST00000301178.4:c.1148T>C	p.Ile383Thr	p.I383T	ENST00000301178	NM_021913.4	383	aTa/aCa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713226	30713226	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	178	409	0	ENST00000359013.4:c.626T>A	p.Ile209Asn	p.I209N	ENST00000359013	NM_001024847.2	209	aTc/aAc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123220539	123220539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	137	572	3	ENST00000218089.9:c.3196C>T	p.Arg1066Trp	p.R1066W	ENST00000218089	NM_001042749.1	1066	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	143	603	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ETV6	2120	MSKCC	GRCh37	12	11905411	11905411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	100	529	0	ENST00000396373.4:c.61G>A	p.Glu21Lys	p.E21K	ENST00000396373	NM_001987.4	21	Gag/Aag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135384	30135384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	126	615	1	ENST00000331968.5:c.434G>A	p.Arg145His	p.R145H	ENST00000331968	NM_002742.2	145	cGt/cAt																																																																															
CDH1	999	MSKCC	GRCh37	16	68842369	68842373	+	frameshift_variant	Frame_Shift_Del	DEL	AACTC	AACTC	GAG			P-0019124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	192	806	2	ENST00000261769.5:c.430_434delinsGAG	p.Asn144GlufsTer23	p.N144Efs*23	ENST00000261769	NM_004360.3	144	AACTCc/GAGc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231817	36231817	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	209	960	1	ENST00000300305.3:c.567C>A	p.Tyr189Ter	p.Y189*	ENST00000300305		189	taC/taA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0019128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	31	831	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	232	496	1	ENST00000257430.4:c.4473dupT	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920402	114920402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	350	739	1	ENST00000543371.1:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000543371	NM_001198531.1	448	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112173590	112173590	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	151	611	0	ENST00000257430.4:c.2299C>T	p.Gln767Ter	p.Q767*	ENST00000257430	NM_000038.5	767	Cag/Tag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223120	5223120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	490	863	2	ENST00000357368.4:c.2683G>A	p.Val895Met	p.V895M	ENST00000357368	NM_002850.3	895	Gtg/Atg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593557	48593557	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0019129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	137	251	2	ENST00000342988.3:c.1308G>C	p.Lys436Asn	p.K436N	ENST00000342988	NM_005359.5	436	aaG/aaC																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152861646	152861646	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	111	749	0	ENST00000406277.2:c.107-1G>A		p.X36_splice	ENST00000406277	NM_152274.4	36																																																																																
EZH1	2145	MSKCC	GRCh37	17	40865324	40865327	+	frameshift_variant	Frame_Shift_Del	DEL	ACTG	ACTG	-			P-0019131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	35	771	0	ENST00000428826.2:c.1104_1107del	p.Ser369LeufsTer55	p.S369Lfs*55	ENST00000428826		368	gtCAGT/gt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702167	47702182	+	frameshift_variant	Frame_Shift_Del	DEL	ATGTAGAACCAATGCA	ATGTAGAACCAATGCA	-			P-0019131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	65	481	0	ENST00000233146.2:c.1763_1778del	p.Tyr588Ter	p.Y588*	ENST00000233146	NM_000251.2	588	tATGTAGAACCAATGCAg/tg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242483	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACA	AATTAAGAGAAGCAACA	CT			P-0019131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	172	923	4	ENST00000275493.2:c.2237_2253delinsCT	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACA/gCT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039418	47039421	+	frameshift_variant	Frame_Shift_Del	DEL	CATC	CATC	-			P-0019131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	108	813	0	ENST00000329236.7:c.812_815del	p.Ile271SerfsTer135	p.I271Sfs*135	ENST00000329236	NM_001204466.1	270	ttCATC/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0019132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	16	706	0	ENST00000256078.4:c.34_35delinsAT	p.Gly12Ile	p.G12I	ENST00000256078	NM_033360.2	12	GGt/ATt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	52	759	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230604	46230604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	31	562	0	ENST00000334344.6:c.853C>T	p.Arg285Trp	p.R285W	ENST00000334344	NM_152641.2	285	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	54	719	0	ENST00000269305.4:c.503A>C	p.His168Pro	p.H168P	ENST00000269305	NM_001126112.2	168	cAc/cCc																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250677	26250677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	38	507	1	ENST00000446824.2:c.157C>T	p.Arg53Cys	p.R53C	ENST00000446824	NM_021018.2	53	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	247	1015	3	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88669547	88669547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56394626		P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	143	1024	0	ENST00000360948.2:c.1351G>A	p.Val451Ile	p.V451I	ENST00000360948	NM_001012338.2	451	Gtc/Atc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865684	57865684	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	181	1088	0	ENST00000228682.2:c.3161A>G	p.Asp1054Gly	p.D1054G	ENST00000228682	NM_005269.2	1054	gAt/gGt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2112497	2112497	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	196	985	0	ENST00000219476.3:c.1258-1G>A		p.X420_splice	ENST00000219476	NM_000548.3	420																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81973570	81973571	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	143	895	3	ENST00000359376.3:c.3387_3388delinsAA	p.Ala1130Thr	p.A1130T	ENST00000359376	NM_002661.3	1129	ctGGca/ctAAca																																																																															
ACVR1	90	MSKCC	GRCh37	2	158595067	158595067	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	72	614	0	ENST00000263640.3:c.1280A>G	p.Tyr427Cys	p.Y427C	ENST00000263640	NM_001105.4	427	tAc/tGc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661648	227661648	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	67	649	0	ENST00000305123.5:c.1807A>T	p.Ser603Cys	p.S603C	ENST00000305123	NM_005544.2	603	Agc/Tgc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39708821	39709804	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	GTGAGTATTTTCTTAAAACTTTGACTTTTGAAAACAAAAAGGAGGAGTTTAAAGAATAAATGTGATGTGTTTCTTTATAATACATATAGAAACTGCATTAATTGGCTTTTACTCATTTGGAATTTGTGATTAATGGACTGATTTCTCTGAACTATGAGAAGTAGAGTTTGCTAAACAAGTAGTATACCCAAGGCTTACATGAAGATTATATAAATTTTTATTACTGAAAAGGCAATAGATATTTATTGTAGAAATTTCAAATAATACAGAATTCATGAAGAATAAATTATTTAAGTTACTTAAAATTTCTTATTGCCTACCACAGATAACTTAAAGCAGTTTCTCTTAGACCTATTCCTGTCAGACATTCTAAGTGAAGTTTCAGTGTGTAAAAATAATAAAACTGCTCATAAAACGGTCGAGGCTTACATGTATCTCTTTCCCCAGATTCAATGAGATTAAATTATATTCATTATTTTCACTCTTATATAGCTTACTATGCTATTGTTATAGTAGAAATTGGATGGAAAGGGAGAAGGGAAATACTTAGTGAACTCATTTGTATTCATTCAATATAGAATTTCTTTCCTCCACATTCCAGTGAGTTACTGCTATGTGGTAGCTAGTGTGCTGTGTGTTTGGTTCCCAAACTTTCATCTTTTATTTTTATTTATTTTATTTTATTTTTTTTCCCAGACTTTCATCTGATAATGATATTTATTTCTGCATATATCCCCCCACCCTATTTTGCTTCCAGGCCGGTGTAAGTGGTTTGTTTTGTTCTATATAGGGCTATAACTATTACTCTTTGGTCTGACCTTCATTATTTTCTCTATTTCTGTTAGTCTTGACCGTAGAATGCCCAGCCAAGAATAACAGTGATTACTCTTGCCATGGAGGCATCCAAGAGTTTGTAGGTCTCCTATGAGTGAGAACTCCTGAATCATAATTATGTTAACTGTGTATTCATGTTCCCCTTTCTAG	GTGAGTATTTTCTTAAAACTTTGACTTTTGAAAACAAAAAGGAGGAGTTTAAAGAATAAATGTGATGTGTTTCTTTATAATACATATAGAAACTGCATTAATTGGCTTTTACTCATTTGGAATTTGTGATTAATGGACTGATTTCTCTGAACTATGAGAAGTAGAGTTTGCTAAACAAGTAGTATACCCAAGGCTTACATGAAGATTATATAAATTTTTATTACTGAAAAGGCAATAGATATTTATTGTAGAAATTTCAAATAATACAGAATTCATGAAGAATAAATTATTTAAGTTACTTAAAATTTCTTATTGCCTACCACAGATAACTTAAAGCAGTTTCTCTTAGACCTATTCCTGTCAGACATTCTAAGTGAAGTTTCAGTGTGTAAAAATAATAAAACTGCTCATAAAACGGTCGAGGCTTACATGTATCTCTTTCCCCAGATTCAATGAGATTAAATTATATTCATTATTTTCACTCTTATATAGCTTACTATGCTATTGTTATAGTAGAAATTGGATGGAAAGGGAGAAGGGAAATACTTAGTGAACTCATTTGTATTCATTCAATATAGAATTTCTTTCCTCCACATTCCAGTGAGTTACTGCTATGTGGTAGCTAGTGTGCTGTGTGTTTGGTTCCCAAACTTTCATCTTTTATTTTTATTTATTTTATTTTATTTTTTTTCCCAGACTTTCATCTGATAATGATATTTATTTCTGCATATATCCCCCCACCCTATTTTGCTTCCAGGCCGGTGTAAGTGGTTTGTTTTGTTCTATATAGGGCTATAACTATTACTCTTTGGTCTGACCTTCATTATTTTCTCTATTTCTGTTAGTCTTGACCGTAGAATGCCCAGCCAAGAATAACAGTGATTACTCTTGCCATGGAGGCATCCAAGAGTTTGTAGGTCTCCTATGAGTGAGAACTCCTGAATCATAATTATGTTAACTGTGTATTCATGTTCCCCTTTCTAG	-			P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	19	466	0	ENST00000361337.2:c.431+1_432-1del		p.X144_splice	ENST00000361337	NM_003286.2	144																																																																																
TOP1	7150	MSKCC	GRCh37	20	39725980	39726852	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTACTGTAGCCCATGTGTTAATATCCTAGTACCTTGCAAAACAATCAAGTACTAAGTAATAAATTATCATTTTGCAAAACATTTCCTGATGTAAAATTTGAGTTGTATGGATTTTGTTGTATTTAAACTTGCGTATTTTTTGTCTTCATTTACTATATTATGTAGGGTTTCTGTCCAACAAGAGTACTTGTATATCTTTGCTATTGGCTCTCATGTGATGGCAGGTAGGTGGGGGTTATCAGATTAGGCCAAACAGAAAACCTCAACTCCAGTTGCGCACAGGAAAGTTTGTCGCTGCAGGACTGCCCCGTGTCTGCTGTTGCAAAGAGAAATGTTAATCTGATGTCCCTCTCGCTGTTAATTCTTGCTCATTTATTTTAGGTACTTTCTACTCTTGAAACCACATATACTATATTTGCCTAGGTGATTTTTTAAAATCTCATTATTCTCAATTTGGATAATGTGGACAGAGGCAGCAGTAAAGTTTACTTCCTGAACTAGCTCAGAAAAAGCAGACTTAATAAATGAATAGAATAGGGGTAATGTTTCCAAGAGAGAATCAGTATGGGATTTCAAACTTGTATTCATAATGCCTGGGGGCTGTGTGCCACGGAGTCTAAGAAACCACATAAGAATTCATTTTTTTCCATGATAAGTCATTTTAAAACATTTTAATATTAGTAAGTACATATTTTATAATAAAGTAATACAACTGTATTTTTTTGTTTTTTCAAAATTCATTAATTGAGATTGGCTACTTCCAGAAACCTTTGACTGAAAAAATGGTGCTTGGGTGTATTTGCAAAGAAACCCAAGGACTTATTAGTGTATTTTCGTTGTTTTTCTTTCATCTCCCCATTTTCTTTTGACT	AGGTACTGTAGCCCATGTGTTAATATCCTAGTACCTTGCAAAACAATCAAGTACTAAGTAATAAATTATCATTTTGCAAAACATTTCCTGATGTAAAATTTGAGTTGTATGGATTTTGTTGTATTTAAACTTGCGTATTTTTTGTCTTCATTTACTATATTATGTAGGGTTTCTGTCCAACAAGAGTACTTGTATATCTTTGCTATTGGCTCTCATGTGATGGCAGGTAGGTGGGGGTTATCAGATTAGGCCAAACAGAAAACCTCAACTCCAGTTGCGCACAGGAAAGTTTGTCGCTGCAGGACTGCCCCGTGTCTGCTGTTGCAAAGAGAAATGTTAATCTGATGTCCCTCTCGCTGTTAATTCTTGCTCATTTATTTTAGGTACTTTCTACTCTTGAAACCACATATACTATATTTGCCTAGGTGATTTTTTAAAATCTCATTATTCTCAATTTGGATAATGTGGACAGAGGCAGCAGTAAAGTTTACTTCCTGAACTAGCTCAGAAAAAGCAGACTTAATAAATGAATAGAATAGGGGTAATGTTTCCAAGAGAGAATCAGTATGGGATTTCAAACTTGTATTCATAATGCCTGGGGGCTGTGTGCCACGGAGTCTAAGAAACCACATAAGAATTCATTTTTTTCCATGATAAGTCATTTTAAAACATTTTAATATTAGTAAGTACATATTTTATAATAAAGTAATACAACTGTATTTTTTTGTTTTTTCAAAATTCATTAATTGAGATTGGCTACTTCCAGAAACCTTTGACTGAAAAAATGGTGCTTGGGTGTATTTGCAAAGAAACCCAAGGACTTATTAGTGTATTTTCGTTGTTTTTCTTTCATCTCCCCATTTTCTTTTGACT	-			P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	32	558	0	ENST00000361337.2:c.852+2_853del		p.X284_splice	ENST00000361337	NM_003286.2	284																																																																																
TOP1	7150	MSKCC	GRCh37	20	39741564	39742586	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTGAGAGCATCTTCCCATCGGCATTGTCTAGTGTTGAGCTTAACAAAGGGAGTTTCTGCTCTGCCCCAGGCCCTGTGCCACATACTGTATATCACAACTCAACATACATATATTTGTATGTAAAACTGAATCAAAAGTTGCACAAAACAATGCTTAGCCTTACTGTGAGCAGTAGATTCTGATCTTTTTTTAACTCTATTTCATTCCTTTAGAAAGTTGGTTATAACTTATAAAATTGTTTAAATAAACCATGCAGGTATCACCATTATATAGTTTTAAAGACCACGCTCTAGAGGAGATCAATTTCTTGGTACTCACGAGAAGAAAAAAAAGTTCATGTTTTTCCCCCAGTCTTGTATTTTAACATAAGTTCTGAATTGTCTCAAAATTCACACTAGCTTTTTGAGTTTGATTGCCCAGAGTAGCAGCACTCCCTCATTTGCTGCCTTATTTAATTTTTTTTTTCCTTTTCTCCATCCCTATTTCAGAGGACAGAATAGAAAGAAAAGGAGCATGAATATTTAACATCCCTATAGATTTCATAGTGAGTGGGGGAGGAAGTAACACTGCAGAATCCAGAGTTCCCAGGCCATGCTGACTGATGCTGTGGCTTCAAACAGAATTGGGAGGCTTCTGTTTTGGATGCCTAGAAATTGCATAAGGGTCAAAAGGCTGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGAACACGAGGTCAAGAGACCATCCTGGCCAATGTGGTGAAACCCCATCTCTACTAAAAATACAAAAAAAAAAAAAAAAATAAAAATTGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTCGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGACGGAGCTTGCAGTGAGCCAAAATTGCGCCATTGCACTCTAGCCTGGCGACAGAGCGAGACTGTCTCAAAAAAAAAAAAAAAAAAAACACAGAACGAAATTGTGTAAGGATCATGTCTCTTCCATTCATGCTCA	AGGTGAGAGCATCTTCCCATCGGCATTGTCTAGTGTTGAGCTTAACAAAGGGAGTTTCTGCTCTGCCCCAGGCCCTGTGCCACATACTGTATATCACAACTCAACATACATATATTTGTATGTAAAACTGAATCAAAAGTTGCACAAAACAATGCTTAGCCTTACTGTGAGCAGTAGATTCTGATCTTTTTTTAACTCTATTTCATTCCTTTAGAAAGTTGGTTATAACTTATAAAATTGTTTAAATAAACCATGCAGGTATCACCATTATATAGTTTTAAAGACCACGCTCTAGAGGAGATCAATTTCTTGGTACTCACGAGAAGAAAAAAAAGTTCATGTTTTTCCCCCAGTCTTGTATTTTAACATAAGTTCTGAATTGTCTCAAAATTCACACTAGCTTTTTGAGTTTGATTGCCCAGAGTAGCAGCACTCCCTCATTTGCTGCCTTATTTAATTTTTTTTTTCCTTTTCTCCATCCCTATTTCAGAGGACAGAATAGAAAGAAAAGGAGCATGAATATTTAACATCCCTATAGATTTCATAGTGAGTGGGGGAGGAAGTAACACTGCAGAATCCAGAGTTCCCAGGCCATGCTGACTGATGCTGTGGCTTCAAACAGAATTGGGAGGCTTCTGTTTTGGATGCCTAGAAATTGCATAAGGGTCAAAAGGCTGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGAACACGAGGTCAAGAGACCATCCTGGCCAATGTGGTGAAACCCCATCTCTACTAAAAATACAAAAAAAAAAAAAAAAATAAAAATTGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTCGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGACGGAGCTTGCAGTGAGCCAAAATTGCGCCATTGCACTCTAGCCTGGCGACAGAGCGAGACTGTCTCAAAAAAAAAAAAAAAAAAAACACAGAACGAAATTGTGTAAGGATCATGTCTCTTCCATTCATGCTCA	-			P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	32	535	1	ENST00000361337.2:c.1451_1453-24del		p.X484_splice	ENST00000361337	NM_003286.2	484																																																																																
KDR	3791	MSKCC	GRCh37	4	55979629	55979629	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	128	752	0	ENST00000263923.4:c.818T>C	p.Val273Ala	p.V273A	ENST00000263923	NM_002253.2	273	gTa/gCa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31437388	31437388	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	102	1138	1	ENST00000344624.3:c.2900G>T	p.Arg967Leu	p.R967L	ENST00000344624		967	cGg/cTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878466	151878466	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	162	856	0	ENST00000262189.6:c.6479C>G	p.Ser2160Cys	p.S2160C	ENST00000262189	NM_170606.2	2160	tCt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	43	902	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0019139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	23	456	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0019141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	90	721	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0019141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	96	555	3	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
CDKN1B	1027	MSKCC	GRCh37	12	12870836	12870836	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	28	265	0	ENST00000228872.4:c.64del	p.Glu22SerfsTer20	p.E22Sfs*20	ENST00000228872	NM_004064.3	21	gcG/gc																																																																															
CBFB	865	MSKCC	GRCh37	16	67063673	67063674	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCACGCTTCCAGAACGCCT			P-0019141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	74	511	0	ENST00000412916.2:c.124_143dup	p.Cys48TrpfsTer48	p.C48Wfs*48	ENST00000412916		41	cag/caGGCACGCTTCCAGAACGCCTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187527299	187527300	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0019141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	103	593	3	ENST00000441802.2:c.10274_10275delinsTT	p.Thr3425Ile	p.T3425I	ENST00000441802	NM_005245.3	3425	aCC/aTT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	120	874	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0019142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	78	697	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0019142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	141	933	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
APC	324	MSKCC	GRCh37	5	112175096	112175097	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0019142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	57	398	0	ENST00000257430.4:c.3807_3808delAT	p.Ile1269MetfsTer6	p.I1269Mfs*6	ENST00000257430	NM_000038.5	1269	ATa/a																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118946	115118946	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	47	398	0	ENST00000257566.3:c.395T>A	p.Met132Lys	p.M132K	ENST00000257566	NM_016569.3	132	aTg/aAg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99478106	99478106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	74	464	1	ENST00000268035.6:c.3010G>A	p.Glu1004Lys	p.E1004K	ENST00000268035	NM_000875.3	1004	Gaa/Aaa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600336	10600336	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs751088754		P-0019143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	78	733	0	ENST00000171111.5:c.1519C>T	p.Arg507Ter	p.R507*	ENST00000171111	NM_203500.1	507	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	222	463	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	247	804	1	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420825	49420825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	69	550	0	ENST00000301067.7:c.14924G>A	p.Arg4975His	p.R4975H	ENST00000301067	NM_003482.3	4975	cGt/cAt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56488199	56488199	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	80	507	0	ENST00000267101.3:c.1718G>C	p.Cys573Ser	p.C573S	ENST00000267101	NM_001982.3	573	tGt/tCt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602427	10602427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	549	666	0	ENST00000171111.5:c.1151C>T	p.Pro384Leu	p.P384L	ENST00000171111	NM_203500.1	384	cCc/cTc																																																																															
SRC	6714	MSKCC	GRCh37	20	36012632	36012632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	83	323	0	ENST00000358208.4:c.76G>A	p.Gly26Ser	p.G26S	ENST00000358208		26	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	129	533	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212293194	212293194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	112	588	2	ENST00000342788.4:c.2658G>T	p.Trp886Cys	p.W886C	ENST00000342788	NM_005235.2	886	tgG/tgT																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0019152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	138	714	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	79	478	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	265	943	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	144	725	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092809	27092809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	321	808	2	ENST00000324856.7:c.2830C>T	p.Gln944Ter	p.Q944*	ENST00000324856	NM_006015.4	944	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581229	48581229	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	243	736	0	ENST00000342988.3:c.533C>G	p.Ser178Ter	p.S178*	ENST00000342988	NM_005359.5	178	tCa/tGa																																																																															
CDK6	1021	MSKCC	GRCh37	7	92355102	92355102	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	81	274	0	ENST00000265734.4:c.375G>C	p.Met125Ile	p.M125I	ENST00000265734	NM_001259.6	125	atG/atC																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094488	27094488	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	150	369	0	ENST00000324856.7:c.3196C>T	p.Gln1066Ter	p.Q1066*	ENST00000324856	NM_006015.4	1066	Cag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108173586	108173586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	49	486	0	ENST00000278616.4:c.5326G>A	p.Glu1776Lys	p.E1776K	ENST00000278616	NM_000051.3	1776	Gaa/Aaa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47705646	47705646	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	58	495	0	ENST00000233146.2:c.2446C>G	p.Gln816Glu	p.Q816E	ENST00000233146	NM_000251.2	816	Cag/Gag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098959	178098959	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	199	468	0	ENST00000397062.3:c.86A>G	p.Asp29Gly	p.D29G	ENST00000397062	NM_006164.4	29	gAt/gGt																																																																															
VHL	7428	MSKCC	GRCh37	3	10183703	10183703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	274	779	3	ENST00000256474.2:c.172C>T	p.Arg58Trp	p.R58W	ENST00000256474	NM_000551.3	58	Cgg/Tgg																																																																															
TET2	54790	MSKCC	GRCh37	4	106158148	106158148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	158	476	0	ENST00000380013.4:c.3049G>A	p.Asp1017Asn	p.D1017N	ENST00000380013	NM_001127208.2	1017	Gat/Aat																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367345	50367346	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	133	431	2	ENST00000331340.3:c.152_153delinsAT	p.Arg51Asn	p.R51N	ENST00000331340	NM_006060.4	51	aGA/aAT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509379	106509379	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	243	659	3	ENST00000359195.3:c.1373T>C	p.Val458Ala	p.V458A	ENST00000359195	NM_002649.2	458	gTt/gCt																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841218	15841218	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	221	297	0	ENST00000307771.7:c.1302C>G	p.Ser434Arg	p.S434R	ENST00000307771	NM_005089.3	434	agC/agG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	142	773	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0019163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	132	583	2	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0019163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	203	1045	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229534	5229534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	44	250	1	ENST00000357368.4:c.2317C>T	p.Arg773Cys	p.R773C	ENST00000357368	NM_002850.3	773	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	139	785	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249510	153249510	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1157879635		P-0019165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	36	907	3	ENST00000281708.4:c.1268G>T	p.Gly423Val	p.G423V	ENST00000281708	NM_033632.3	423	gGa/gTa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984782	11984782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1164096095		P-0019165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	24	783	3	ENST00000353533.5:c.328C>T	p.Arg110Ter	p.R110*	ENST00000353533	NM_003010.3	110	Cga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112399	115112400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	172	801	0	ENST00000257566.3:c.1340dup	p.Gly448ArgfsTer244	p.G448Rfs*244	ENST00000257566	NM_016569.3	447	cgc/cgGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0019165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	93	692	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
CBFB	865	MSKCC	GRCh37	16	67070659	67070659	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0019165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	63	339	0	ENST00000412916.2:c.282+1G>T		p.X94_splice	ENST00000412916		94																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	83	625	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68863559	68863560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	122	792	0	ENST00000261769.5:c.2301dup	p.Asp768Ter	p.D768*	ENST00000261769	NM_004360.3	766	-/T																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155737	56155738	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	82	478	0	ENST00000399503.3:c.830dup	p.Pro278AlafsTer23	p.P278Afs*23	ENST00000399503	NM_005921.1	277	gtg/gTtg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180518	56180518	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	44	509	0	ENST00000399503.3:c.3847del	p.Glu1283SerfsTer5	p.E1283Sfs*5	ENST00000399503	NM_005921.1	1283	Gag/ag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845415	151845415	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	107	822	1	ENST00000262189.6:c.13597C>T	p.Arg4533Ter	p.R4533*	ENST00000262189	NM_170606.2	4533	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	139	701	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	158	616	0	ENST00000269305.4:c.730G>C	p.Gly244Arg	p.G244R	ENST00000269305	NM_001126112.2	244	Ggc/Cgc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781918	9781918	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0019172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	110	650	0	ENST00000377346.4:c.2055G>T	p.Gln685His	p.Q685H	ENST00000377346	NM_005026.3	685	caG/caT																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106088	8106088	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	115	558	0	ENST00000346208.3:c.908C>G	p.Pro303Arg	p.P303R	ENST00000346208		303	cCc/cGc																																																																															
RET	5979	MSKCC	GRCh37	10	43617463	43617463	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	98	442	0	ENST00000355710.3:c.2800G>A	p.Val934Ile	p.V934I	ENST00000355710	NM_020975.4	934	Gta/Ata																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944959	31944959	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	138	601	0	ENST00000340398.3:c.142C>A	p.Leu48Ile	p.L48I	ENST00000340398	NM_001013699.2	48	Ctt/Att																																																																															
GLI1	2735	MSKCC	GRCh37	12	57857529	57857529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	189	854	0	ENST00000228682.2:c.55C>T	p.Leu19Phe	p.L19F	ENST00000228682	NM_005269.2	19	Ctc/Ttc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562181	21562181	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	447	1258	0	ENST00000382592.4:c.1738G>T	p.Val580Phe	p.V580F	ENST00000382592	NM_014572.2	580	Gtc/Ttc																																																																															
MAX	4149	MSKCC	GRCh37	14	65544637	65544637	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	143	555	0	ENST00000358664.4:c.289C>T	p.Gln97Ter	p.Q97*	ENST00000358664	NM_002382.4	97	Cag/Tag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923477	9923477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	128	607	0	ENST00000330684.3:c.1810G>A	p.Ala604Thr	p.A604T	ENST00000330684	NM_001134407.1	604	Gct/Act																																																																															
ALK	238	MSKCC	GRCh37	2	29543748	29543748	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0019172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	88	449	1	ENST00000389048.3:c.1415G>T	p.Arg472Leu	p.R472L	ENST00000389048	NM_004304.4	472	cGg/cTg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046966	128046966	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0019172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	187	684	0	ENST00000285398.2:c.769A>T	p.Lys257Ter	p.K257*	ENST00000285398	NM_000122.1	257	Aag/Tag																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091800	29091800	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	113	742	0	ENST00000328354.6:c.1157G>T	p.Gly386Val	p.G386V	ENST00000328354	NM_007194.3	386	gGa/gTa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30648427	30648427	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	176	744	0	ENST00000359013.4:c.52A>G	p.Thr18Ala	p.T18A	ENST00000359013	NM_001024847.2	18	Acg/Gcg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513283	149513283	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	44	564	0	ENST00000261799.4:c.800A>T	p.Asp267Val	p.D267V	ENST00000261799	NM_002609.3	267	gAt/gTt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149514525	149514525	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138830253		P-0019172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	61	495	0	ENST00000261799.4:c.419C>T	p.Thr140Met	p.T140M	ENST00000261799	NM_002609.3	140	aCg/aTg																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983243	149983243	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	67	582	0	ENST00000253339.5:c.3015del	p.Ala1006LeufsTer14	p.A1006Lfs*14	ENST00000253339		1005	aaA/aa																																																																															
ATRX	546	MSKCC	GRCh37	X	76937242	76937242	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	90	560	0	ENST00000373344.5:c.3506A>T	p.Lys1169Met	p.K1169M	ENST00000373344	NM_000489.3	1169	aAg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0019180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	318	776	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
CBFB	865	MSKCC	GRCh37	16	67063628	67063628	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0019180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	219	665	0	ENST00000412916.2:c.79-2A>G		p.X27_splice	ENST00000412916		27																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66218788	66218788	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	80	698	0	ENST00000273854.3:c.2270A>T	p.Glu757Val	p.E757V	ENST00000273854	NM_004439.5	757	gAg/gTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	115	637	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391024	89391024	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	54	628	0	ENST00000336596.2:c.1095delA	p.Lys365AsnfsTer6	p.K365Nfs*6	ENST00000336596	NM_005233.5	364	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	40	406	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	60	726	2	ENST00000261937.6:c.1267dupC	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																															
APC	324	MSKCC	GRCh37	5	112177091	112177091	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	55	737	0	ENST00000257430.4:c.5803del	p.Gln1935SerfsTer35	p.Q1935Sfs*35	ENST00000257430	NM_000038.5	1934	Ccc/cc																																																																															
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	32	287	0	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827927	40827927	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs536150112		P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	60	550	2	ENST00000373198.4:c.2501G>A	p.Arg834His	p.R834H	ENST00000373198	NM_133170.3	834	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	71	670	6	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692958	89692958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	50	559	0	ENST00000371953.3:c.442G>A	p.Ala148Thr	p.A148T	ENST00000371953	NM_000314.4	148	Gca/Aca																																																																															
ATM	472	MSKCC	GRCh37	11	108199950	108199950	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	50	368	0	ENST00000278616.4:c.7292A>C	p.Lys2431Thr	p.K2431T	ENST00000278616	NM_000051.3	2431	aAa/aCa																																																																															
RB1	5925	MSKCC	GRCh37	13	48923144	48923144	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	37	425	0	ENST00000267163.4:c.596delT	p.Leu199TyrfsTer2	p.L199Yfs*2	ENST00000267163	NM_000321.2	198	Ttt/tt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679814	88679814	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753910026		P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	37	370	0	ENST00000360948.2:c.649G>A	p.Val217Ile	p.V217I	ENST00000360948	NM_001012338.2	217	Gtc/Atc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2103415	2103415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	73	628	1	ENST00000219476.3:c.298G>A	p.Ala100Thr	p.A100T	ENST00000219476	NM_000548.3	100	Gcg/Acg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372138	45372138	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	78	706	0	ENST00000262160.6:c.1031A>C	p.Glu344Ala	p.E344A	ENST00000262160	NM_005901.5	344	gAa/gCa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291084	10291084	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	97	647	0	ENST00000340748.4:c.387del	p.Lys130AsnfsTer129	p.K130Nfs*129	ENST00000340748		129	ccC/cc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945737	17945737	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	91	726	0	ENST00000458235.1:c.2123A>C	p.Lys708Thr	p.K708T	ENST00000458235	NM_000215.3	708	aAg/aCg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47635601	47635603	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	62	578	0	ENST00000233146.2:c.279_281del	p.Leu94del	p.L94del	ENST00000233146	NM_000251.2	91	gaTCTt/gat																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170146	32170147	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	53	659	0	ENST00000375023.3:c.3461dup	p.Gly1156ArgfsTer24	p.G1156Rfs*24	ENST00000375023	NM_004557.3	1154	ggc/ggGc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100390	27100390	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0019184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	319	673	0	ENST00000324856.7:c.4101+1G>A		p.X1367_splice	ENST00000324856	NM_006015.4	1367																																																																																
GATA3	2625	MSKCC	GRCh37	10	8111488	8111488	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	184	908	0	ENST00000346208.3:c.974C>G	p.Thr325Ser	p.T325S	ENST00000346208		325	aCc/aGc																																																																															
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0019185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	54	1106	3	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0019185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	35	804	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021828	71021828	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	20	319	0	ENST00000318789.4:c.1531-1G>A		p.X511_splice	ENST00000318789	NM_032682.5	511																																																																																
SLX4	84464	MSKCC	GRCh37	16	3640796	3640796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	26	608	0	ENST00000294008.3:c.2843C>T	p.Ala948Val	p.A948V	ENST00000294008	NM_032444.2	948	gCg/gTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	178	627	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
EED	8726	MSKCC	GRCh37	11	85966294	85966294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	44	387	0	ENST00000263360.6:c.391G>A	p.Glu131Lys	p.E131K	ENST00000263360	NM_003797.3	131	Gaa/Aaa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115435	115115437	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0019188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	174	723	0	ENST00000257566.3:c.889_891del	p.Asn297del	p.N297del	ENST00000257566	NM_016569.3	297	AAC/-																																																																															
CDH1	999	MSKCC	GRCh37	16	68844139	68844139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	219	697	1	ENST00000261769.5:c.727G>A	p.Glu243Lys	p.E243K	ENST00000261769	NM_004360.3	243	Gag/Aag																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0019190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	106	530	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25457242	25457242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147001633		P-0019190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	15	741	1	ENST00000264709.3:c.2645G>A	p.Arg882His	p.R882H	ENST00000264709	NM_175629.2	882	cGc/cAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0019190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	218	529	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
ERCC5	2073	MSKCC	GRCh37	13	103518999	103518999	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	105	478	0	ENST00000355739.4:c.2337C>A	p.Phe779Leu	p.F779L	ENST00000355739	NM_000123.3	779	ttC/ttA																																																																															
CBFB	865	MSKCC	GRCh37	16	67116114	67116114	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0019190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	123	400	0	ENST00000412916.2:c.400-2A>G		p.X134_splice	ENST00000412916		134																																																																																
ESR1	2099	MSKCC	GRCh37	6	152265456	152265456	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	184	613	0	ENST00000206249.3:c.909G>C	p.Lys303Asn	p.K303N	ENST00000206249	NM_000125.3	303	aaG/aaC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	57	571	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	21	723	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
CBFB	865	MSKCC	GRCh37	16	67100603	67100603	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	51	466	0	ENST00000412916.2:c.301A>G	p.Met101Val	p.M101V	ENST00000412916		101	Atg/Gtg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11177124	11177124	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	94	816	0	ENST00000361445.4:c.6953C>G	p.Thr2318Ser	p.T2318S	ENST00000361445	NM_004958.3	2318	aCc/aGc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163301	47163301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	46	638	0	ENST00000409792.3:c.2825G>A	p.Gly942Glu	p.G942E	ENST00000409792	NM_014159.6	942	gGa/gAa																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128347955	128347955	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	112	890	0	ENST00000265960.3:c.550C>G	p.His184Asp	p.H184D	ENST00000265960	NM_001006617.1	184	Cac/Gac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	56	670	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	136	1021	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366945	15366945	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	57	911	0	ENST00000263377.2:c.1681A>T	p.Lys561Ter	p.K561*	ENST00000263377	NM_058243.2	561	Aaa/Taa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861129	57861129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	76	745	0	ENST00000228682.2:c.926G>A	p.Arg309Gln	p.R309Q	ENST00000228682	NM_005269.2	309	cGg/cAg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134687	41134687	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760747458		P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	21	455	0	ENST00000379561.5:c.941G>A	p.Arg314His	p.R314H	ENST00000379561	NM_002015.3	314	cGc/cAc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87636203	87636203	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	57	506	1	ENST00000277120.3:c.2368C>T	p.Arg790Ter	p.R790*	ENST00000277120		790	Cga/Tga																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500579	99500579	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34102392		P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	77	603	0	ENST00000268035.6:c.4012G>A	p.Ala1338Thr	p.A1338T	ENST00000268035	NM_000875.3	1338	Gcc/Acc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909689	50909689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	282	1196	0	ENST00000440232.2:c.1409G>A	p.Arg470His	p.R470H	ENST00000440232	NM_002691.3	470	cGc/cAc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18280066	18280066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	22	314	0	ENST00000222254.8:c.2149C>T	p.Arg717Cys	p.R717C	ENST00000222254	NM_005027.3	717	Cgc/Tgc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259578	89259578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	29	399	0	ENST00000336596.2:c.722G>T	p.Arg241Met	p.R241M	ENST00000336596	NM_005233.5	241	aGg/aTg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111855968	111855968	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	66	953	0	ENST00000341259.2:c.19C>T	p.Gln7Ter	p.Q7*	ENST00000341259	NM_005475.2	7	Cag/Tag																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	174	937	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	71	1200	1	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222730	5222731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	86	927	0	ENST00000357368.4:c.3072dupC	p.Val1025ArgfsTer34	p.V1025Rfs*34	ENST00000357368	NM_002850.3	1024	-/C																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	276	922	2	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188143	11188143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	61	501	1	ENST00000361445.4:c.5951C>T	p.Thr1984Met	p.T1984M	ENST00000361445	NM_004958.3	1984	aCg/aTg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115261314	115261314	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	76	636	0	ENST00000438362.2:c.2407T>G	p.Leu803Val	p.L803V	ENST00000438362	NM_001242891.1	803	Ttg/Gtg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716229	243716229	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	72	856	0	ENST00000263826.5:c.965A>G	p.Asp322Gly	p.D322G	ENST00000263826	NM_005465.4	322	gAc/gGc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104375123	104375123	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	45	907	0	ENST00000369902.3:c.1121A>T	p.Asn374Ile	p.N374I	ENST00000369902	NM_016169.3	374	aAc/aTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118360844	118360844	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	52	292	0	ENST00000534358.1:c.4576A>C	p.Ile1526Leu	p.I1526L	ENST00000534358	NM_005933.3	1526	Atc/Ctc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118366515	118366515	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	173	854	0	ENST00000534358.1:c.5464T>G	p.Leu1822Val	p.L1822V	ENST00000534358	NM_005933.3	1822	Tta/Gta																																																																															
RECQL	5965	MSKCC	GRCh37	12	21628427	21628427	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	45	845	2	ENST00000421138.2:c.1191T>A	p.Asn397Lys	p.N397K	ENST00000421138		397	aaT/aaA																																																																															
POLE	5426	MSKCC	GRCh37	12	133218390	133218390	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	146	901	0	ENST00000320574.5:c.5221C>T	p.Gln1741Ter	p.Q1741*	ENST00000320574	NM_006231.2	1741	Cag/Tag																																																																															
FLT1	2321	MSKCC	GRCh37	13	28919682	28919682	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs115085855		P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	72	590	1	ENST00000282397.4:c.2255C>T	p.Ser752Leu	p.S752L	ENST00000282397	NM_002019.4	752	tCg/tTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906708	32906708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	59	833	0	ENST00000380152.3:c.1093C>T	p.Pro365Ser	p.P365S	ENST00000380152		365	Cca/Tca																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873751	35873751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	152	1008	1	ENST00000216797.5:c.100C>A	p.Leu34Met	p.L34M	ENST00000216797	NM_020529.2	34	Ctg/Atg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95579430	95579430	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	27	332	0	ENST00000343455.3:c.2039T>C	p.Val680Ala	p.V680A	ENST00000343455	NM_177438.2	680	gTt/gCt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031966	10031966	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	35	753	0	ENST00000330684.3:c.857A>G	p.Tyr286Cys	p.Y286C	ENST00000330684	NM_001134407.1	286	tAc/tGc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830807	72830807	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	104	746	1	ENST00000268489.5:c.5774del	p.Gly1925ValfsTer72	p.G1925Vfs*72	ENST00000268489	NM_006885.3	1925	gGt/gt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992061	72992061	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	28	594	0	ENST00000268489.5:c.1984A>G	p.Met662Val	p.M662V	ENST00000268489	NM_006885.3	662	Atg/Gtg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346769	89346769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	21	377	0	ENST00000301030.4:c.6181G>A	p.Gly2061Arg	p.G2061R	ENST00000301030	NM_001256183.1	2061	Ggg/Agg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89352004	89352004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	58	1057	2	ENST00000301030.4:c.946G>A	p.Gly316Ser	p.G316S	ENST00000301030	NM_001256183.1	316	Ggc/Agc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682249	37682249	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	89	824	1	ENST00000447079.4:c.3440A>T	p.Gln1147Leu	p.Q1147L	ENST00000447079	NM_015083.1	1147	cAg/cTg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533905	63533905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	37	519	1	ENST00000307078.5:c.1249G>A	p.Ala417Thr	p.A417T	ENST00000307078	NM_004655.3	417	Gcg/Acg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211820	2211820	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	65	1026	0	ENST00000398665.3:c.1536G>T	p.Gln512His	p.Q512H	ENST00000398665	NM_032482.2	512	caG/caT																																																																															
INSR	3643	MSKCC	GRCh37	19	7141686	7141686	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	37	853	0	ENST00000302850.5:c.2682+2T>C		p.X894_splice	ENST00000302850	NM_000208.2	894																																																																																
BABAM1	29086	MSKCC	GRCh37	19	17382427	17382427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	46	934	0	ENST00000359435.4:c.307G>A	p.Glu103Lys	p.E103K	ENST00000359435	NM_001033549.1	103	Gag/Aag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212173	36212173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	154	852	3	ENST00000222270.7:c.1924C>T	p.Arg642Trp	p.R642W	ENST00000222270	NM_014727.1	642	Cgg/Tgg																																																																															
ERF	2077	MSKCC	GRCh37	19	42752817	42752817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	200	1035	1	ENST00000222329.4:c.1447C>T	p.Arg483Cys	p.R483C	ENST00000222329	NM_006494.2	483	Cgc/Tgc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753732	42753732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	58	1025	2	ENST00000222329.4:c.532G>A	p.Ala178Thr	p.A178T	ENST00000222329	NM_006494.2	178	Gcc/Acc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912486	50912486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	121	765	1	ENST00000440232.2:c.2000G>A	p.Arg667Gln	p.R667Q	ENST00000440232	NM_002691.3	667	cGg/cAg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912806	50912806	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	53	953	0	ENST00000440232.2:c.2041del	p.Leu681SerfsTer13	p.L681Sfs*13	ENST00000440232	NM_002691.3	679	gaC/ga																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967200	25967200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	38	365	0	ENST00000435504.4:c.2006C>T	p.Ala669Val	p.A669V	ENST00000435504		669	gCa/gTa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560946	9560946	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	43	463	0	ENST00000353224.5:c.836A>G	p.Gln279Arg	p.Q279R	ENST00000353224	NM_177990.2	279	cAg/cGg																																																																															
SRC	6714	MSKCC	GRCh37	20	36030853	36030853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	27	435	0	ENST00000358208.4:c.1132G>A	p.Ala378Thr	p.A378T	ENST00000358208		378	Gcg/Acg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521688	89521688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	105	597	0	ENST00000336596.2:c.2765G>A	p.Gly922Asp	p.G922D	ENST00000336596	NM_005233.5	922	gGt/gAt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670255	134670255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	39	756	0	ENST00000398015.3:c.166C>T	p.Arg56Cys	p.R56C	ENST00000398015	NM_004441.4	56	Cgc/Tgc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1962829	1962829	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	68	659	1	ENST00000382891.5:c.3323A>T	p.His1108Leu	p.H1108L	ENST00000382891	NM_133335.3	1108	cAc/cTc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523731	176523731	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	71	943	0	ENST00000292408.4:c.2147del	p.Pro716GlnfsTer6	p.P716Qfs*6	ENST00000292408	NM_213647.1	714	tgC/tg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043368	180043368	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	94	688	0	ENST00000261937.6:c.3218G>A	p.Ser1073Asn	p.S1073N	ENST00000261937	NM_182925.4	1073	aGt/aAt																																																																															
FYN	2534	MSKCC	GRCh37	6	112035595	112035595	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	60	728	0	ENST00000368678.4:c.299A>G	p.Asp100Gly	p.D100G	ENST00000368678		100	gAc/gGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	166	910	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440860	52440869	+	frameshift_variant	Frame_Shift_Del	DEL	CCGATACGCT	CCGATACGCT	-			P-0019200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	99	805	0	ENST00000460680.1:c.635_644del	p.Glu212AlafsTer16	p.E212Afs*16	ENST00000460680	NM_004656.3	212	gAGCGTATCGGc/gc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737064	145737064	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0019200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	106	621	0	ENST00000428558.2:c.3502G>C	p.Gly1168Arg	p.G1168R	ENST00000428558	NM_004260.3	1168	Gga/Cga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0019202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	29	964	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238758086		P-0019202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	18	1022	0	ENST00000358026.2:c.2729C>T	p.Thr910Met	p.T910M	ENST00000358026	NM_001128849.1	910	aCg/aTg																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20159750	20159750	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	11	413	0	ENST00000379607.5:c.9G>C	p.Lys3Asn	p.K3N	ENST00000379607	NM_001412.3	3	aaG/aaC																																																																															
RB1	5925	MSKCC	GRCh37	13	48955457	48955457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	18	617	0	ENST00000267163.4:c.1573G>A	p.Ala525Thr	p.A525T	ENST00000267163	NM_000321.2	525	Gcc/Acc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374945	45374945	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019212-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			407	128	732	0	ENST00000262160.6:c.898G>C	p.Asp300His	p.D300H	ENST00000262160	NM_005901.5	300	Gat/Cat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105946	27105946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019212-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			388	82	521	0	ENST00000324856.7:c.5557G>A	p.Glu1853Lys	p.E1853K	ENST00000324856	NM_006015.4	1853	Gag/Aag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458949	120458949	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019212-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			374	139	864	0	ENST00000256646.2:c.6396G>C	p.Lys2132Asn	p.K2132N	ENST00000256646	NM_024408.3	2132	aaG/aaC																																																																															
NUP93	9688	MSKCC	GRCh37	16	56871519	56871519	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0019212-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			300	101	468	0	ENST00000308159.5:c.1900-1G>C		p.X634_splice	ENST00000308159	NM_014669.4	634																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15271910	15271910	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019212-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			518	122	1080	1	ENST00000263388.2:c.6529C>A	p.Pro2177Thr	p.P2177T	ENST00000263388	NM_000435.2	2177	Cca/Aca																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18276981	18276981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019212-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			305	94	444	0	ENST00000222254.8:c.1428G>A	p.Met476Ile	p.M476I	ENST00000222254	NM_005027.3	476	atG/atA																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098854	47098854	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019212-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			742	125	1003	0	ENST00000409792.3:c.6420G>C	p.Gln2140His	p.Q2140H	ENST00000409792	NM_014159.6	2140	caG/caC																																																																															
ATRX	546	MSKCC	GRCh37	X	76855028	76855028	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019212-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			161	109	343	0	ENST00000373344.5:c.5808G>C	p.Lys1936Asn	p.K1936N	ENST00000373344	NM_000489.3	1936	aaG/aaC																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001524	150001524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	277	683	0	ENST00000253339.5:c.2080C>T	p.Arg694Cys	p.R694C	ENST00000253339		694	Cgt/Tgt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984774	11984774	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	291	643	0	ENST00000353533.5:c.322del	p.Ile108LeufsTer20	p.I108Lfs*20	ENST00000353533	NM_003010.3	107	gAa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0019222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	214	843	3	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0019222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	25	646	2	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367257	50367257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	34	471	0	ENST00000331340.3:c.64G>A	p.Asp22Asn	p.D22N	ENST00000331340	NM_006060.4	22	Gat/Aat																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073616	8073616	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	35	398	1	ENST00000377482.5:c.1043del	p.Pro348ArgfsTer104	p.P348Rfs*104	ENST00000377482	NM_018948.3	348	cCg/cg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211539	98211539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	108	532	1	ENST00000331920.6:c.3616C>T	p.Arg1206Cys	p.R1206C	ENST00000331920	NM_000264.3	1206	Cgc/Tgc																																																																															
PARP1	142	MSKCC	GRCh37	1	226578235	226578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	58	727	0	ENST00000366794.5:c.493A>G	p.Lys165Glu	p.K165E	ENST00000366794	NM_001618.3	165	Aag/Gag																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38279386	38279386	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1196	80	1058	0	ENST00000425967.3:c.1103G>C	p.Gly368Ala	p.G368A	ENST00000425967	NM_001174067.1	368	gGg/gCg																																																																															
ATRX	546	MSKCC	GRCh37	X	76872129	76872129	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	93	744	0	ENST00000373344.5:c.5518A>T	p.Thr1840Ser	p.T1840S	ENST00000373344	NM_000489.3	1840	Act/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577587	7577587	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	31	677	0	ENST00000269305.4:c.694A>T	p.Ile232Phe	p.I232F	ENST00000269305	NM_001126112.2	232	Atc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0019225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	39	725	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942792	44942793	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	59	956	0	ENST00000377967.4:c.3372_3373insC	p.Thr1125HisfsTer26	p.T1125Hfs*26	ENST00000377967	NM_021140.2	1124	-/C																																																																															
PREX2	80243	MSKCC	GRCh37	8	68995575	68995575	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0019235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	132	579	0	ENST00000288368.4:c.1979T>A	p.Leu660Ter	p.L660*	ENST00000288368	NM_024870.2	660	tTa/tAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	112	739	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0019248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	102	609	3	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0019248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	123	549	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	72	480	1	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717733	89717733	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	239	615	0	ENST00000371953.3:c.758T>A	p.Ile253Asn	p.I253N	ENST00000371953	NM_000314.4	253	aTc/aAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213899	66213899	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	97	534	0	ENST00000273854.3:c.2531G>T	p.Trp844Leu	p.W844L	ENST00000273854	NM_004439.5	844	tGg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112136997	112136997	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	120	531	0	ENST00000257430.4:c.751G>T	p.Glu251Ter	p.E251*	ENST00000257430	NM_000038.5	251	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	101	588	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0019251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	222	948	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625348	69625348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	87	595	2	ENST00000334134.2:c.445G>A	p.Ala149Thr	p.A149T	ENST00000334134	NM_005247.2	149	Gcc/Acc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573484	48573484	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	51	290	0	ENST00000342988.3:c.68T>C	p.Leu23Ser	p.L23S	ENST00000342988	NM_005359.5	23	tTg/tCg																																																																															
BTK	695	MSKCC	GRCh37	X	100626680	100626680	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	120	447	1	ENST00000308731.7:c.250G>T	p.Glu84Ter	p.E84*	ENST00000308731	NM_000061.2	84	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0019252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	14	803	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	220	668	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0019257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	297	767	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0019257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	291	909	6	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022592	31022592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	533	681	0	ENST00000375687.4:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000375687	NM_015338.5	693	Cga/Tga																																																																															
STAG2	10735	MSKCC	GRCh37	X	123176495	123176495	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0019257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	108	436	0	ENST00000218089.9:c.462G>C	p.Glu154Asp	p.E154D	ENST00000218089	NM_001042749.1	154	gaG/gaC																																																																															
DDR2	4921	MSKCC	GRCh37	1	162722894	162722894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	245	583	1	ENST00000367921.3:c.92G>T	p.Arg31Leu	p.R31L	ENST00000367921	NM_006182.2	31	cGc/cTc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46740279	46740279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150315374		P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	154	558	1	ENST00000371975.4:c.1759C>T	p.Arg587Trp	p.R587W	ENST00000371975	NM_003579.3	587	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	317	798	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	259	693	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670219	134670219	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	60	656	2	ENST00000398015.3:c.130G>T	p.Glu44Ter	p.E44*	ENST00000398015	NM_004441.4	44	Gaa/Taa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120460341	120460341	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	312	794	0	ENST00000256646.2:c.5974G>C	p.Ala1992Pro	p.A1992P	ENST00000256646	NM_024408.3	1992	Gca/Cca																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120471649	120471649	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	170	472	0	ENST00000256646.2:c.3842G>C	p.Cys1281Ser	p.C1281S	ENST00000256646	NM_024408.3	1281	tGt/tCt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120512341	120512341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	118	511	1	ENST00000256646.2:c.901G>A	p.Glu301Lys	p.E301K	ENST00000256646	NM_024408.3	301	Gaa/Aaa																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741537	17741537	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	257	526	0	ENST00000250003.3:c.208C>G	p.His70Asp	p.H70D	ENST00000250003	NM_002478.4	70	Cac/Gac																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741742	17741742	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	84	734	0	ENST00000250003.3:c.413G>C	p.Ser138Thr	p.S138T	ENST00000250003	NM_002478.4	138	aGc/aCc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742477	17742477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	30	678	0	ENST00000250003.3:c.659C>G	p.Ala220Gly	p.A220G	ENST00000250003	NM_002478.4	220	gCc/gGc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138852	64138852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	93	799	0	ENST00000334205.4:c.2219C>T	p.Ala740Val	p.A740V	ENST00000334205	NM_003942.2	740	gCc/gTc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625132	69625132	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	50	741	2	ENST00000334134.2:c.661G>T	p.Glu221Ter	p.E221*	ENST00000334134	NM_005247.2	221	Gag/Tag																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180568	94180568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	49	593	1	ENST00000323929.3:c.1600G>A	p.Glu534Lys	p.E534K	ENST00000323929	NM_005591.3	534	Gag/Aag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489538	56489538	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	288	535	0	ENST00000267101.3:c.2003G>T	p.Gly668Val	p.G668V	ENST00000267101	NM_001982.3	668	gGg/gTg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112910793	112910793	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	341	735	3	ENST00000351677.2:c.802G>T	p.Gly268Cys	p.G268C	ENST00000351677	NM_002834.3	268	Ggt/Tgt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563091	21563091	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	321	868	3	ENST00000382592.4:c.828G>T	p.Gln276His	p.Q276H	ENST00000382592	NM_014572.2	276	caG/caT																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986631	36986731	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCCTGGCTGGTGGCCCGGGTGTGCGCCAAGGCCGGCGCCACCGCTGCCCACGGAGATGGCCGCTGCCGCCGCCTGCGCGGCCTGCGCCTGGTGCTGCGC	CTGCCTGGCTGGTGGCCCGGGTGTGCGCCAAGGCCGGCGCCACCGCTGCCCACGGAGATGGCCGCTGCCGCCGCCTGCGCGGCCTGCGCCTGGTGCTGCGC	-			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2756	1122	213	0	ENST00000354822.5:c.958_1058del	p.Ala320ArgfsTer85	p.A320Rfs*85	ENST00000354822	NM_001079668.2	320	GCGCAGCACCAGGCGCAGGCCGCGCAGGCGGCGGCAGCGGCCATCTCCGTGGGCAGCGGTGGCGCCGGCCTTGGCGCACACCCGGGCCACCAGCCAGGCAGc/c																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992733	72992733	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	257	695	2	ENST00000268489.5:c.1312G>T	p.Ala438Ser	p.A438S	ENST00000268489	NM_006885.3	438	Gcg/Tcg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246290	41246290	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	105	770	0	ENST00000357654.3:c.1258G>C	p.Asp420His	p.D420H	ENST00000357654	NM_007294.3	420	Gat/Cat																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805568	46805568	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	185	892	0	ENST00000290295.7:c.388T>G	p.Tyr130Asp	p.Y130D	ENST00000290295	NM_006361.5	130	Tat/Gat																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117864	70117864	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	41	448	0	ENST00000245479.2:c.332C>G	p.Ala111Gly	p.A111G	ENST00000245479	NM_000346.3	111	gCc/gGc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600429	10600429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	346	1033	2	ENST00000171111.5:c.1426G>T	p.Gly476Trp	p.G476W	ENST00000171111	NM_203500.1	476	Ggg/Tgg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18966881	18966881	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	227	913	0	ENST00000262803.5:c.1692G>C	p.Gln564His	p.Q564H	ENST00000262803	NM_002911.3	564	caG/caC																																																																															
ERF	2077	MSKCC	GRCh37	19	42753170	42753170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	178	624	1	ENST00000222329.4:c.1094C>T	p.Ser365Leu	p.S365L	ENST00000222329	NM_006494.2	365	tCg/tTg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467177	25467177	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	530	591	0	ENST00000264709.3:c.1698G>C	p.Leu566Phe	p.L566F	ENST00000264709	NM_175629.2	566	ttG/ttC																																																																															
IDH1	3417	MSKCC	GRCh37	2	209108244	209108244	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	219	694	0	ENST00000345146.2:c.605C>G	p.Ser202Cys	p.S202C	ENST00000345146	NM_005896.2	202	tCt/tGt																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205786	128205786	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	275	700	0	ENST00000341105.2:c.89C>A	p.Ala30Glu	p.A30E	ENST00000341105	NM_032638.4	30	gCg/gAg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155059	55155059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	51	441	1	ENST00000257290.5:c.2768G>A	p.Ser923Asn	p.S923N	ENST00000257290	NM_006206.4	923	aGt/aAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280028	66280028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	34	323	0	ENST00000273854.3:c.1661G>T	p.Arg554Ile	p.R554I	ENST00000273854	NM_004439.5	554	aGa/aTa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138201315	138201315	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	186	580	0	ENST00000237289.4:c.2014G>C	p.Gly672Arg	p.G672R	ENST00000237289	NM_001270507.1	672	Gga/Cga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157505469	157505469	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	275	522	1	ENST00000346085.5:c.3450T>A	p.Phe1150Leu	p.F1150L	ENST00000346085	NM_020732.3	1150	ttT/ttA																																																																															
PREX2	80243	MSKCC	GRCh37	8	69136798	69136798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	401	609	0	ENST00000288368.4:c.4712C>T	p.Ala1571Val	p.A1571V	ENST00000288368	NM_024870.2	1571	gCa/gTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8317888	8317888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	122	647	1	ENST00000356435.5:c.5725C>A	p.His1909Asn	p.H1909N	ENST00000356435		1909	Cac/Aac																																																																															
MED12	9968	MSKCC	GRCh37	X	70356384	70356384	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	296	837	0	ENST00000374080.3:c.5279A>T	p.Glu1760Val	p.E1760V	ENST00000374080		1760	gAg/gTg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205861	128205861	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	108	301	0	ENST00000341105.2:c.14C>A	p.Pro5His	p.P5H	ENST00000341105	NM_032638.4	5	cCc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0019268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	109	817	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195643	102195643	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200590873		P-0019268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	107	765	1	ENST00000263464.3:c.403C>T	p.Arg135Cys	p.R135C	ENST00000263464	NM_001165.4	135	Cgt/Tgt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32945095	32945095	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0019268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	27	470	0	ENST00000380152.3:c.8490G>A	p.Trp2830Ter	p.W2830*	ENST00000380152		2830	tgG/tgA																																																																															
XPO1	7514	MSKCC	GRCh37	2	61717804	61717804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	49	869	0	ENST00000401558.2:c.1995G>T	p.Trp665Cys	p.W665C	ENST00000401558	NM_003400.3	665	tgG/tgT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93964397	93964397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	46	877	1	ENST00000369303.4:c.2500G>A	p.Glu834Lys	p.E834K	ENST00000369303	NM_004440.3	834	Gaa/Aaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061232	38061234	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0019273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	246	765	0	ENST00000250448.2:c.755_757del	p.Asn252del	p.N252del	ENST00000250448	NM_004496.3	252	aACAtg/atg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577136	64577136	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	225	747	0	ENST00000337652.1:c.446del	p.Gly149ValfsTer5	p.G149Vfs*5	ENST00000337652	NM_130803.2	149	gGt/gt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2111865	2111871	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	ACTGCAG	ACTGCAG	-			P-0019275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	162	420	0	ENST00000219476.3:c.1120-5_1121del		p.X374_splice	ENST00000219476	NM_000548.3	374																																																																																
DAXX	1616	MSKCC	GRCh37	6	33286993	33286994	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TAGC			P-0019275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	177	525	0	ENST00000374542.5:c.1941-1_1943dup	p.Tyr648Ter	p.Y648*	ENST00000374542	NM_001141970.1	648	tat/taGCTAt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17949096	17949096	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	35	721	1	ENST00000458235.1:c.1545G>T	p.Lys515Asn	p.K515N	ENST00000458235	NM_000215.3	515	aaG/aaT																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25457179	25457179	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	46	592	0	ENST00000264709.3:c.2708C>G	p.Ala903Gly	p.A903G	ENST00000264709	NM_175629.2	903	gCt/gGt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729767	41729767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	44	321	0	ENST00000242208.4:c.762G>T	p.Leu254Phe	p.L254F	ENST00000242208	NM_002192.2	254	ttG/ttT																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0019281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	57	237	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578213	7578214	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-	rs1131691030		P-0019281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	299	697	0	ENST00000269305.4:c.635_636del	p.Phe212SerfsTer3	p.F212Sfs*3	ENST00000269305	NM_001126112.2	212	tTT/t																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577222	64577224	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0019281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	263	655	1	ENST00000337652.1:c.358_360del	p.Lys120del	p.K120del	ENST00000337652	NM_130803.2	120	AAG/-																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740898	58740901	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-			P-0019281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	136	545	0	ENST00000305921.3:c.1806_1809del	p.Cys603PhefsTer21	p.C603Ffs*21	ENST00000305921	NM_003620.3	601	acTGTT/ac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923680	39923681	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0019281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	217	541	0	ENST00000378444.4:c.3410_3411del	p.Lys1137SerfsTer4	p.K1137Sfs*4	ENST00000378444	NM_001123385.1	1137	aAA/a																																																																															
TSC2	7249	MSKCC	GRCh37	16	2104325	2104327	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0019281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	255	544	0	ENST00000219476.3:c.369_371del	p.Phe124del	p.F124del	ENST00000219476	NM_000548.3	122	cTCTtc/ctc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12633289	12633291	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTC	CTC	-			P-0019281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	201	510	0	ENST00000251849.4:c.1109_1111del	p.Gly370del	p.G370del	ENST00000251849	NM_002880.3	370	gGAGat/gat																																																																															
DAXX	1616	MSKCC	GRCh37	6	33286872	33286873	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0019281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	245	575	0	ENST00000374542.5:c.2064_2065del	p.Pro689GlnfsTer51	p.P689Qfs*51	ENST00000374542	NM_001141970.1	688	tcTCcc/tccc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0019295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	78	469	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
CDH1	999	MSKCC	GRCh37	16	68771319	68771319	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0019295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	40	216	0	ENST00000261769.5:c.1A>G	p.Met1?	p.M1?	ENST00000261769	NM_004360.3	1	Atg/Gtg																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514203	69514203	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	73	822	0	ENST00000294312.3:c.478C>G	p.Leu160Val	p.L160V	ENST00000294312	NM_005117.2	160	Ctt/Gtt																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514274	69514274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	80	810	0	ENST00000294312.3:c.407C>T	p.Ser136Phe	p.S136F	ENST00000294312	NM_005117.2	136	tCc/tTc																																																																															
CBFB	865	MSKCC	GRCh37	16	67132595	67132621	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATGATTTTGTCATTGCAGGCAAGAAGA	ATGATTTTGTCATTGCAGGCAAGAAGA	-			P-0019295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	91	571	0	ENST00000412916.2:c.496-18_504del		p.X166_splice	ENST00000412916		166																																																																																
CTCF	10664	MSKCC	GRCh37	16	67645892	67645894	+	inframe_deletion	In_Frame_Del	DEL	ACG	ACG	-			P-0019295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	176	711	0	ENST00000264010.4:c.820_822del	p.Thr274del	p.T274del	ENST00000264010	NM_006565.3	274	ACG/-																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40359617	40359617	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	56	771	0	ENST00000293328.3:c.2036A>G	p.Tyr679Cys	p.Y679C	ENST00000293328	NM_012448.3	679	tAc/tGc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148529838	148529838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	28	525	2	ENST00000320356.2:c.251C>T	p.Ser84Leu	p.S84L	ENST00000320356	NM_004456.4	84	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	307	715	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0019298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	48	691	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	202	907	1	ENST00000269305.4:c.853G>T	p.Glu285Ter	p.E285*	ENST00000269305	NM_001126112.2	285	Gag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028850	47028850	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	123	796	0	ENST00000329236.7:c.154G>T	p.Glu52Ter	p.E52*	ENST00000329236	NM_001204466.1	52	Gag/Tag																																																																															
CUL3	8452	MSKCC	GRCh37	2	225449680	225449680	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	150	503	0	ENST00000264414.4:c.47T>C	p.Met16Thr	p.M16T	ENST00000264414	NM_003590.4	16	aTg/aCg																																																																															
TET1	80312	MSKCC	GRCh37	10	70406267	70406267	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	191	858	0	ENST00000373644.4:c.3781G>T	p.Asp1261Tyr	p.D1261Y	ENST00000373644	NM_030625.2	1261	Gat/Tat																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437034	110437034	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	39	107	0	ENST00000375856.3:c.1367C>T	p.Ser456Leu	p.S456L	ENST00000375856	NM_003749.2	456	tCg/tTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223186	5223186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	237	993	0	ENST00000357368.4:c.2617G>A	p.Glu873Lys	p.E873K	ENST00000357368	NM_002850.3	873	Gag/Aag																																																																															
CUL3	8452	MSKCC	GRCh37	2	225370851	225370851	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0019298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	40	442	0	ENST00000264414.4:c.1030-2A>G		p.X344_splice	ENST00000264414	NM_003590.4	344																																																																																
TMPRSS2	7113	MSKCC	GRCh37	21	42860401	42860401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	187	764	0	ENST00000398585.3:c.476C>T	p.Ser159Phe	p.S159F	ENST00000398585	NM_001135099.1	159	tCc/tTc																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23539113	23539113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	82	569	0	ENST00000380871.4:c.326C>T	p.Thr109Ile	p.T109I	ENST00000380871	NM_006167.3	109	aCt/aTt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900287	101900287	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	104	560	0	ENST00000374994.4:c.721T>A	p.Ser241Thr	p.S241T	ENST00000374994	NM_004612.2	241	Tcg/Acg																																																																															
ATRX	546	MSKCC	GRCh37	X	76855958	76855958	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	111	882	0	ENST00000373344.5:c.5642G>C	p.Arg1881Thr	p.R1881T	ENST00000373344	NM_000489.3	1881	aGa/aCa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	150	708	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0019300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	8	388	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	169	736	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578467	7578467	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	210	996	0	ENST00000269305.4:c.463A>C	p.Thr155Pro	p.T155P	ENST00000269305	NM_001126112.2	155	Acc/Ccc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220489	1220490	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0019306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	260	789	0	ENST00000326873.7:c.582_583delinsAA	p.Asp194_Leu195delinsGluMet	p.D194_L195delinsEM	ENST00000326873	NM_000455.4	194	gaCCtg/gaAAtg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220592	1220671	+	frameshift_variant	Frame_Shift_Del	DEL	TTCGCGGCGGACGACACCTGCCGGACCAGCCAGGGCTCCCCGGCTTTCCAGCCGCCCGAGATTGCCAACGGCCTGGACAC	TTCGCGGCGGACGACACCTGCCGGACCAGCCAGGGCTCCCCGGCTTTCCAGCCGCCCGAGATTGCCAACGGCCTGGACAC	-			P-0019306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	243	631	0	ENST00000326873.7:c.610_689del	p.Phe204LeufsTer35	p.F204Lfs*35	ENST00000326873	NM_000455.4	204	TTCGCGGCGGACGACACCTGCCGGACCAGCCAGGGCTCCCCGGCTTTCCAGCCGCCCGAGATTGCCAACGGCCTGGACACc/c																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610611	10610611	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0019306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	186	744	0	ENST00000171111.5:c.99C>G	p.Tyr33Ter	p.Y33*	ENST00000171111	NM_203500.1	33	taC/taG																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426736	212426736	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	142	720	1	ENST00000342788.4:c.2379G>T	p.Gln793His	p.Q793H	ENST00000342788	NM_005235.2	793	caG/caT																																																																															
PMS2	5395	MSKCC	GRCh37	7	6038764	6038764	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	75	853	0	ENST00000265849.7:c.680del	p.Ile227ThrfsTer31	p.I227Tfs*31	ENST00000265849	NM_000535.5	227	aTc/ac																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249878	110249878	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	156	719	0	ENST00000374672.4:c.797A>G	p.Tyr266Cys	p.Y266C	ENST00000374672	NM_004235.4	266	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	272	731	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0019307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	170	812	1	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2588121	2588121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	16	38	0	ENST00000342085.4:c.8G>A	p.Arg3Lys	p.R3K	ENST00000342085	NM_002613.4	3	aGg/aAg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163770	152163770	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	59	619	0	ENST00000206249.3:c.491G>C	p.Arg164Thr	p.R164T	ENST00000206249	NM_000125.3	164	aGa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	120	937	1	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100285	8100285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	50	811	0	ENST00000346208.3:c.259C>A	p.Pro87Thr	p.P87T	ENST00000346208		87	Ccg/Acg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682455	37682455	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	76	639	0	ENST00000447079.4:c.3646C>T	p.Gln1216Ter	p.Q1216*	ENST00000447079	NM_015083.1	1216	Cag/Tag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213869	66213869	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	46	712	0	ENST00000273854.3:c.2561A>G	p.Lys854Arg	p.K854R	ENST00000273854	NM_004439.5	854	aAg/aGg																																																																															
IL10	3586	MSKCC	GRCh37	1	206944326	206944326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	52	764	0	ENST00000423557.1:c.304G>A	p.Asp102Asn	p.D102N	ENST00000423557	NM_000572.2	102	Gac/Aac																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163848	32163848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	41	672	0	ENST00000375023.3:c.5378G>A	p.Arg1793Gln	p.R1793Q	ENST00000375023	NM_004557.3	1793	cGa/cAa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68950455	68950455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	45	764	0	ENST00000288368.4:c.767C>T	p.Ser256Phe	p.S256F	ENST00000288368	NM_024870.2	256	tCt/tTt																																																																															
SDHB	6390	MSKCC	GRCh37	1	17350530	17350530	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	58	766	0	ENST00000375499.3:c.580A>T	p.Thr194Ser	p.T194S	ENST00000375499	NM_003000.2	194	Acc/Tcc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120478123	120478123	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	66	725	0	ENST00000256646.2:c.3627C>G	p.Phe1209Leu	p.F1209L	ENST00000256646	NM_024408.3	1209	ttC/ttG																																																																															
RET	5979	MSKCC	GRCh37	10	43596035	43596035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	31	856	0	ENST00000355710.3:c.202C>A	p.Leu68Met	p.L68M	ENST00000355710	NM_020975.4	68	Ctg/Atg																																																																															
WT1	7490	MSKCC	GRCh37	11	32414250	32414250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	44	699	0	ENST00000332351.3:c.1301G>T	p.Arg434Leu	p.R434L	ENST00000332351	NM_024426.4	434	cGt/cTt																																																																															
WT1	7490	MSKCC	GRCh37	11	32421493	32421493	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	55	491	0	ENST00000332351.3:c.1098+1G>T		p.X366_splice	ENST00000332351	NM_024426.4	366																																																																																
CHEK1	1111	MSKCC	GRCh37	11	125499192	125499192	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	89	727	0	ENST00000428830.2:c.354+1G>T		p.X118_splice	ENST00000428830	NM_001114121.2	118																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49448529	49448529	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	33	598	0	ENST00000301067.7:c.182del	p.Gly61ValfsTer69	p.G61Vfs*69	ENST00000301067	NM_003482.3	61	gGt/gt																																																																															
POLE	5426	MSKCC	GRCh37	12	133249841	133249841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	33	767	0	ENST00000320574.5:c.1382C>T	p.Ser461Leu	p.S461L	ENST00000320574	NM_006231.2	461	tCa/tTa																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675145	40675145	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	85	954	0	ENST00000249776.8:c.109G>C	p.Glu37Gln	p.E37Q	ENST00000249776	NM_033286.3	37	Gaa/Caa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423636	88423637	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	20	571	2	ENST00000360948.2:c.2198_2199delinsAA	p.Pro733Gln	p.P733Q	ENST00000360948	NM_001012338.2	733	cCC/cAA																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640124	3640124	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	68	1208	0	ENST00000294008.3:c.3515C>G	p.Ser1172Cys	p.S1172C	ENST00000294008	NM_032444.2	1172	tCt/tGt																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349314	11349314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	130	870	2	ENST00000332029.2:c.22G>A	p.Ala8Thr	p.A8T	ENST00000332029	NM_003745.1	8	Gca/Aca																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627398	37627398	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	98	1082	0	ENST00000447079.4:c.1313A>T	p.Lys438Met	p.K438M	ENST00000447079	NM_015083.1	438	aAg/aTg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41247864	41247864	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	74	716	0	ENST00000357654.3:c.669G>T	p.Lys223Asn	p.K223N	ENST00000357654	NM_007294.3	223	aaG/aaT																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63531788	63531788	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	90	832	0	ENST00000307078.5:c.2193G>C	p.Gln731His	p.Q731H	ENST00000307078	NM_004655.3	731	caG/caC																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597486	10597486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	130	878	1	ENST00000171111.5:c.1717G>T	p.Asp573Tyr	p.D573Y	ENST00000171111	NM_203500.1	573	Gat/Tat																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953357	17953357	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	28	975	0	ENST00000458235.1:c.629G>T	p.Arg210Leu	p.R210L	ENST00000458235	NM_000215.3	210	cGg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36227674	36227674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	37	935	0	ENST00000222270.7:c.7243C>T	p.Arg2415Cys	p.R2415C	ENST00000222270	NM_014727.1	2415	Cgc/Tgc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50920466	50920466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	83	717	0	ENST00000440232.2:c.3158G>T	p.Arg1053Leu	p.R1053L	ENST00000440232	NM_002691.3	1053	cGc/cTc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25497809	25497809	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	69	658	0	ENST00000264709.3:c.639+1G>T		p.X213_splice	ENST00000264709	NM_175629.2	213																																																																																
SF3B1	23451	MSKCC	GRCh37	2	198288640	198288640	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	51	953	1	ENST00000335508.6:c.87A>T	p.Gln29His	p.Q29H	ENST00000335508	NM_012433.2	29	caA/caT																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845304	42845304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	75	973	1	ENST00000398585.3:c.958G>T	p.Gly320Cys	p.G320C	ENST00000398585	NM_001135099.1	320	Ggc/Tgc																																																																															
NF2	4771	MSKCC	GRCh37	22	30077545	30077545	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	56	903	2	ENST00000338641.4:c.1692G>T	p.Glu564Asp	p.E564D	ENST00000338641	NM_000268.3	564	gaG/gaT																																																																															
MITF	4286	MSKCC	GRCh37	3	69988247	69988247	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	53	571	0	ENST00000352241.4:c.583-2A>T		p.X195_splice	ENST00000352241	NM_198159.2	195																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89391011	89391011	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	67	862	1	ENST00000336596.2:c.1077C>G	p.Phe359Leu	p.F359L	ENST00000336596	NM_005233.5	359	ttC/ttG																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146752	185146752	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	122	1023	2	ENST00000265026.3:c.383G>T	p.Gly128Val	p.G128V	ENST00000265026	NM_004721.4	128	gGt/gTt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286182	66286182	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	14	561	0	ENST00000273854.3:c.1504T>A	p.Tyr502Asn	p.Y502N	ENST00000273854	NM_004439.5	502	Tat/Aat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187554927	187554927	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	56	612	0	ENST00000441802.2:c.4234A>T	p.Ile1412Phe	p.I1412F	ENST00000441802	NM_005245.3	1412	Att/Ttt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873616	35873616	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	23	425	0	ENST00000303115.3:c.572T>G	p.Leu191Arg	p.L191R	ENST00000303115	NM_002185.3	191	cTg/cGg																																																																															
MSH3	4437	MSKCC	GRCh37	5	80071558	80071558	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	39	662	0	ENST00000265081.6:c.2299G>C	p.Asp767His	p.D767H	ENST00000265081	NM_002439.4	767	Gat/Cat																																																																															
APC	324	MSKCC	GRCh37	5	112174134	112174134	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	68	643	0	ENST00000257430.4:c.2843C>G	p.Ser948Cys	p.S948C	ENST00000257430	NM_000038.5	948	tCt/tGt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120708	94120708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	45	573	0	ENST00000369303.4:c.343G>T	p.Val115Leu	p.V115L	ENST00000369303	NM_004440.3	115	Gta/Tta																																																																															
HGF	3082	MSKCC	GRCh37	7	81331964	81331964	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	72	534	0	ENST00000222390.5:c.2120T>C	p.Val707Ala	p.V707A	ENST00000222390	NM_000601.4	707	gTc/gCc																																																																															
HGF	3082	MSKCC	GRCh37	7	81372707	81372707	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	44	536	0	ENST00000222390.5:c.827C>G	p.Pro276Arg	p.P276R	ENST00000222390	NM_000601.4	276	cCt/cGt																																																																															
EZH2	2146	MSKCC	GRCh37	7	148525858	148525858	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	52	670	0	ENST00000320356.2:c.599A>G	p.Gln200Arg	p.Q200R	ENST00000320356	NM_004456.4	200	cAg/cGg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965431	68965431	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	99	1277	0	ENST00000288368.4:c.1043A>G	p.Glu348Gly	p.E348G	ENST00000288368	NM_024870.2	348	gAg/gGg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68972915	68972915	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	113	643	0	ENST00000288368.4:c.1240G>T	p.Glu414Ter	p.E414*	ENST00000288368	NM_024870.2	414	Gaa/Taa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70971020	70971020	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	75	1128	0	ENST00000276594.2:c.1241A>G	p.Tyr414Cys	p.Y414C	ENST00000276594	NM_024504.3	414	tAc/tGc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738058	145738058	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	32	1015	0	ENST00000428558.2:c.2852G>C	p.Gly951Ala	p.G951A	ENST00000428558	NM_004260.3	951	gGg/gCg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742988	145742988	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	48	182	0	ENST00000428558.2:c.116G>T	p.Arg39Leu	p.R39L	ENST00000428558	NM_004260.3	39	cGc/cTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8633334	8633334	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	53	709	0	ENST00000356435.5:c.335G>T	p.Arg112Ile	p.R112I	ENST00000356435		112	aGa/aTa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410680	63410680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	40	929	2	ENST00000330258.3:c.2487C>A	p.His829Gln	p.H829Q	ENST00000330258	NM_152424.3	829	caC/caA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412260	63412260	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	38	1106	0	ENST00000330258.3:c.907G>T	p.Gly303Cys	p.G303C	ENST00000330258	NM_152424.3	303	Ggc/Tgc																																																																															
AR	367	MSKCC	GRCh37	X	66931358	66931358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	42	811	0	ENST00000374690.3:c.2000G>A	p.Gly667Asp	p.G667D	ENST00000374690	NM_000044.3	667	gGc/gAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76776914	76776914	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	53	1017	1	ENST00000373344.5:c.7038G>T	p.Arg2346Ser	p.R2346S	ENST00000373344	NM_000489.3	2346	agG/agT																																																																															
ATRX	546	MSKCC	GRCh37	X	76937183	76937183	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	44	876	0	ENST00000373344.5:c.3565C>A	p.Leu1189Ile	p.L1189I	ENST00000373344	NM_000489.3	1189	Cta/Ata																																																																															
ATRX	546	MSKCC	GRCh37	X	76938655	76938655	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	38	900	0	ENST00000373344.5:c.2093A>G	p.Lys698Arg	p.K698R	ENST00000373344	NM_000489.3	698	aAg/aGg																																																																															
XIAP	331	MSKCC	GRCh37	X	123019576	123019576	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	43	823	1	ENST00000355640.3:c.64G>T	p.Glu22Ter	p.E22*	ENST00000355640		22	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	129	707	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	117	808	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101552	27101552	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	144	924	0	ENST00000324856.7:c.4834A>C	p.Lys1612Gln	p.K1612Q	ENST00000324856	NM_006015.4	1612	Aaa/Caa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101559	27101569	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAGGCAGGT	AGAAGGCAGGT	-			P-0019322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	139	908	0	ENST00000324856.7:c.4841_4851del	p.Gln1614ProfsTer30	p.Q1614Pfs*30	ENST00000324856	NM_006015.4	1614	cAGAAGGCAGGT/c																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99459268	99459268	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	104	833	0	ENST00000268035.6:c.1904C>G	p.Ser635Cys	p.S635C	ENST00000268035	NM_000875.3	635	tCt/tGt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44733217	44733218	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0019322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	69	276	0	ENST00000377967.4:c.209_210del	p.Lys70SerfsTer11	p.K70Sfs*11	ENST00000377967	NM_021140.2	70	aAG/a																																																																															
RBM10	8241	MSKCC	GRCh37	X	47035956	47035956	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	CT			P-0019322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	144	506	0	ENST00000329236.7:c.403delinsCT	p.Lys135LeufsTer4	p.K135Lfs*4	ENST00000329236	NM_001204466.1	135	Aag/CTag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578439	7578439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	147	1162	1	ENST00000269305.4:c.491delA	p.Lys164SerfsTer6	p.K164Sfs*6	ENST00000269305	NM_001126112.2	164	aAg/ag																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913355		P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	87	705	0	ENST00000288602.6:c.1406G>T	p.Gly469Val	p.G469V	ENST00000288602	NM_004333.4	469	gGa/gTa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553591	106553591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	20	553	4	ENST00000369096.4:c.1556C>T	p.Ala519Val	p.A519V	ENST00000369096	NM_001198.3	519	gCg/gTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812317	212812317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	52	536	0	ENST00000342788.4:c.259G>A	p.Val87Met	p.V87M	ENST00000342788	NM_005235.2	87	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	114	767	0	ENST00000269305.4:c.673-2A>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66280161	66280161	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	29	368	1	ENST00000273854.3:c.1528G>T	p.Asp510Tyr	p.D510Y	ENST00000273854	NM_004439.5	510	Gac/Tac																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797759	45797759	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	198	896	0	ENST00000372115.3:c.892-1G>T		p.X298_splice	ENST00000372115	NM_001048171.1	298																																																																																
YAP1	10413	MSKCC	GRCh37	11	101981641	101981641	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	32	258	1	ENST00000282441.5:c.62C>A	p.Ser21Ter	p.S21*	ENST00000282441	NM_001130145.2	21	tCg/tAg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118352582	118352582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	80	1002	2	ENST00000534358.1:c.3787C>A	p.Pro1263Thr	p.P1263T	ENST00000534358	NM_005933.3	1263	Cca/Aca																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729133	66729133	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	163	958	1	ENST00000307102.5:c.341A>T	p.Glu114Val	p.E114V	ENST00000307102	NM_002755.3	114	gAg/gTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29654802	29654802	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	108	549	0	ENST00000358273.4:c.5556del	p.Thr1853HisfsTer10	p.T1853Hfs*10	ENST00000358273	NM_001042492.2	1852	Ggg/gg																																																																															
NF1	4763	MSKCC	GRCh37	17	29663933	29663933	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	71	430	0	ENST00000358273.4:c.6427+1G>A		p.X2143_splice	ENST00000358273	NM_001042492.2	2143																																																																																
DNMT3A	1788	MSKCC	GRCh37	2	25463594	25463594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	153	811	1	ENST00000264709.3:c.2088G>T	p.Gln696His	p.Q696H	ENST00000264709	NM_175629.2	696	caG/caT																																																																															
ALK	238	MSKCC	GRCh37	2	29451930	29451930	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	102	1028	1	ENST00000389048.3:c.2635G>T	p.Gly879Cys	p.G879C	ENST00000389048	NM_004304.4	879	Ggt/Tgt																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47606988	47606988	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	147	887	1	ENST00000263735.4:c.738A>T	p.Gln246His	p.Q246H	ENST00000263735	NM_002354.2	246	caA/caT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295820	212295820	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	106	780	3	ENST00000342788.4:c.2493G>T	p.Met831Ile	p.M831I	ENST00000342788	NM_005235.2	831	atG/atT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812257	212812257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	70	631	0	ENST00000342788.4:c.319G>T	p.Gly107Trp	p.G107W	ENST00000342788	NM_005235.2	107	Ggg/Tgg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46281224	46281224	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	105	778	1	ENST00000371998.3:c.4021G>T	p.Gly1341Cys	p.G1341C	ENST00000371998		1341	Ggt/Tgt																																																																															
EP300	2033	MSKCC	GRCh37	22	41537209	41537209	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	134	950	0	ENST00000263253.7:c.2036A>T	p.Gln679Leu	p.Q679L	ENST00000263253	NM_001429.3	679	cAa/cTa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967261	134967261	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	88	973	0	ENST00000398015.3:c.2600G>C	p.Ser867Thr	p.S867T	ENST00000398015	NM_004441.4	867	aGc/aCc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1955056	1955056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	31	962	0	ENST00000382891.5:c.2143C>T	p.His715Tyr	p.H715Y	ENST00000382891	NM_133335.3	715	Cac/Tac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541616	187541616	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	46	559	0	ENST00000441802.2:c.6124G>T	p.Glu2042Ter	p.E2042*	ENST00000441802	NM_005245.3	2042	Gag/Tag																																																																															
E2F3	1871	MSKCC	GRCh37	6	20487034	20487034	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	154	718	0	ENST00000346618.3:c.999G>C	p.Glu333Asp	p.E333D	ENST00000346618	NM_001949.4	333	gaG/gaC																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528337	157528338	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGATAACAC			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	149	1131	0	ENST00000346085.5:c.6064_6072dup	p.Asp2022_Thr2024dup	p.D2022_T2024dup	ENST00000346085	NM_020732.3	2022	agg/agGGATAACACg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50358676	50358676	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	104	526	0	ENST00000331340.3:c.19C>G	p.Gln7Glu	p.Q7E	ENST00000331340	NM_006060.4	7	Caa/Gaa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467693	50467693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	249	1075	0	ENST00000331340.3:c.928G>T	p.Val310Leu	p.V310L	ENST00000331340	NM_006060.4	310	Gtg/Ttg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68972970	68972970	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	291	891	0	ENST00000288368.4:c.1295T>A	p.Val432Glu	p.V432E	ENST00000288368	NM_024870.2	432	gTg/gAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465632	8465632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	159	834	0	ENST00000356435.5:c.3548G>A	p.Gly1183Glu	p.G1183E	ENST00000356435		1183	gGg/gAg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249393	110249393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	498	1531	0	ENST00000374672.4:c.1180G>T	p.Ala394Ser	p.A394S	ENST00000374672	NM_004235.4	394	Gcc/Tcc																																																																															
ATR	545	MSKCC	GRCh37	3	142224136	142224138	+	missense_variant	Missense_Mutation	ONP	CAT	CAT	TAC			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	51	412	0	ENST00000350721.4:c.5039_5041delinsGTA	p.Tyr1680_Ala1681delinsCysThr	p.Y1680_A1681delinsCT	ENST00000350721	NM_001184.3	1680	tATGct/tGTAct																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435372	18435374	+	missense_variant	Missense_Mutation	ONP	TAC	TAC	AAA			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	35	647	0	ENST00000266497.5:c.357_359delinsAAA	p.Asn119_Thr120delinsLysLys	p.N119_T120delinsKK	ENST00000266497		119	aaTACg/aaAAAg																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0019324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	82	529	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
EP300	2033	MSKCC	GRCh37	22	41572925	41572925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	97	793	2	ENST00000263253.7:c.5210G>A	p.Arg1737His	p.R1737H	ENST00000263253	NM_001429.3	1737	cGc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0019329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	93	898	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37672015	37672015	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	431	592	0	ENST00000447079.4:c.2801del	p.Pro934LeufsTer12	p.P934Lfs*12	ENST00000447079	NM_015083.1	934	Cct/ct																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781193	135781193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	119	804	0	ENST00000298552.3:c.1772C>T	p.Pro591Leu	p.P591L	ENST00000298552	NM_001162426.1	591	cCg/cTg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64574650	64574650	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0019334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	145	825	0	ENST00000337652.1:c.839+1G>T		p.X280_splice	ENST00000337652	NM_130803.2	280																																																																																
MTOR	2475	MSKCC	GRCh37	1	11174386	11174386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	147	754	0	ENST00000361445.4:c.7289G>T	p.Arg2430Met	p.R2430M	ENST00000361445	NM_004958.3	2430	aGg/aTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255934	16255934	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	320	726	1	ENST00000375759.3:c.3199C>T	p.Gln1067Ter	p.Q1067*	ENST00000375759	NM_015001.2	1067	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	26	748	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	64	534	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CBFB	865	MSKCC	GRCh37	16	67063640	67063640	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	77	676	1	ENST00000412916.2:c.89C>A	p.Thr30Lys	p.T30K	ENST00000412916		30	aCg/aAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	56	665	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117383	115117383	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	43	734	0	ENST00000257566.3:c.791del	p.Pro264LeufsTer18	p.P264Lfs*18	ENST00000257566	NM_016569.3	264	cCt/ct																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566848	212566848	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	45	387	0	ENST00000342788.4:c.1333C>G	p.Leu445Val	p.L445V	ENST00000342788	NM_005235.2	445	Cta/Gta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	246	507	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37673738	37673738	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	155	762	0	ENST00000447079.4:c.2892C>G	p.Ile964Met	p.I964M	ENST00000447079	NM_015083.1	964	atC/atG																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646254	23646256	+	missense_variant	Missense_Mutation	ONP	ATC	ATC	TTG			P-0019349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	128	785	0	ENST00000261584.4:c.1611_1613delinsCAA	p.Ile538Asn	p.I538N	ENST00000261584	NM_024675.3	537	tcGATt/tcCAAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0019363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	317	713	3	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998901	11998902	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	116	278	0	ENST00000353533.5:c.404dup	p.Thr136AsnfsTer4	p.T136Nfs*4	ENST00000353533	NM_003010.3	135	tca/tCca																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0019364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	230	758	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252962	36252962	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	114	455	0	ENST00000300305.3:c.400G>C	p.Ala134Pro	p.A134P	ENST00000300305		134	Gct/Cct																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257998	16257999	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0019364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	19	443	0	ENST00000375759.3:c.5263_5264del	p.Ser1755TyrfsTer12	p.S1755Yfs*12	ENST00000375759	NM_015001.2	1755	AGt/t																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259374	16259375	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0019364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	59	326	0	ENST00000375759.3:c.6641_6642del	p.Glu2214AlafsTer11	p.E2214Afs*11	ENST00000375759	NM_015001.2	2213	acAGag/acag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259744	16259744	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	59	648	0	ENST00000375759.3:c.7009C>T	p.Arg2337Ter	p.R2337*	ENST00000375759	NM_015001.2	2337	Cga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115710	8115711	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	317	478	0	ENST00000346208.3:c.1060dupC	p.Leu354ProfsTer17	p.L354Pfs*17	ENST00000346208		352	-/C																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2206746	2206746	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	194	707	0	ENST00000398665.3:c.806C>G	p.Ser269Trp	p.S269W	ENST00000398665	NM_032482.2	269	tCg/tGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	63	610	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0019369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	480	763	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343545	343545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	62	766	3	ENST00000262320.3:c.2129C>T	p.Ala710Val	p.A710V	ENST00000262320	NM_003502.3	710	gCg/gTg																																																																															
RARA	5914	MSKCC	GRCh37	17	38510626	38510626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	422	765	1	ENST00000254066.5:c.880C>T	p.Arg294Trp	p.R294W	ENST00000254066	NM_000964.3	294	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112128170	112128170	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	111	493	1	ENST00000257430.4:c.673G>T	p.Glu225Ter	p.E225*	ENST00000257430	NM_000038.5	225	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174266	112174267	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0019369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	94	418	0	ENST00000257430.4:c.2975_2976del	p.Ser992LysfsTer15	p.S992Kfs*15	ENST00000257430	NM_000038.5	992	aGT/a																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163843	152163843	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	185	484	0	ENST00000206249.3:c.564C>A	p.Cys188Ter	p.C188*	ENST00000206249	NM_000125.3	188	tgC/tgA																																																																															
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs121913370		P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	204	302	1	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4110558	4110558	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	149	697	0	ENST00000262948.5:c.399C>G	p.Phe133Leu	p.F133L	ENST00000262948	NM_030662.3	133	ttC/ttG																																																																															
HGF	3082	MSKCC	GRCh37	7	81381466	81381466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	100	353	0	ENST00000222390.5:c.595G>A	p.Glu199Lys	p.E199K	ENST00000222390	NM_000601.4	199	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106364	27106364	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	297	507	1	ENST00000324856.7:c.5975C>G	p.Ser1992Ter	p.S1992*	ENST00000324856	NM_006015.4	1992	tCa/tGa																																																																															
RB1	5925	MSKCC	GRCh37	13	48955407	48955407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	87	411	1	ENST00000267163.4:c.1523C>T	p.Ser508Phe	p.S508F	ENST00000267163	NM_000321.2	508	tCt/tTt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246538	105246538	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	157	583	2	ENST00000349310.3:c.62C>A	p.Thr21Asn	p.T21N	ENST00000349310	NM_001014432.1	21	aCc/aAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42042175	42042175	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	194	753	0	ENST00000219905.7:c.6370G>C	p.Glu2124Gln	p.E2124Q	ENST00000219905	NM_001164273.1	2124	Gaa/Caa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66782075	66782075	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	105	425	0	ENST00000307102.5:c.1042G>C	p.Glu348Gln	p.E348Q	ENST00000307102	NM_002755.3	348	Gag/Cag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843589	3843590	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	114	543	0	ENST00000262367.5:c.1012_1013dup	p.Gln338HisfsTer17	p.Q338Hfs*17	ENST00000262367	NM_004380.2	338	caa/caCAa																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870080	40870080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	255	480	0	ENST00000428826.2:c.937C>T	p.His313Tyr	p.H313Y	ENST00000428826		313	Cat/Tat																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602939	10602939	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	446	856	0	ENST00000171111.5:c.640-1G>C		p.X214_splice	ENST00000171111	NM_203500.1	214																																																																																
APC	324	MSKCC	GRCh37	5	112174754	112174754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	119	360	2	ENST00000257430.4:c.3463G>A	p.Glu1155Lys	p.E1155K	ENST00000257430	NM_000038.5	1155	Gaa/Aaa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956563	93956563	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	96	362	0	ENST00000369303.4:c.2673C>A	p.Asp891Glu	p.D891E	ENST00000369303	NM_004440.3	891	gaC/gaA																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509729	106509729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	134	600	2	ENST00000359195.3:c.1723C>T	p.Leu575Phe	p.L575F	ENST00000359195	NM_002649.2	575	Ctc/Ttc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48649634	48649634	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	208	493	0	ENST00000376670.3:c.118G>C	p.Gly40Arg	p.G40R	ENST00000376670	NM_002049.3	40	Ggc/Cgc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223349	53223349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	184	353	1	ENST00000375401.3:c.4010G>A	p.Arg1337Lys	p.R1337K	ENST00000375401	NM_004187.3	1337	aGa/aAa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53225868	53225868	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	180	392	2	ENST00000375401.3:c.2981G>A	p.Arg994Lys	p.R994K	ENST00000375401	NM_004187.3	994	aGg/aAg																																																																															
BTK	695	MSKCC	GRCh37	X	100626662	100626662	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	156	317	0	ENST00000308731.7:c.268G>C	p.Glu90Gln	p.E90Q	ENST00000308731	NM_000061.2	90	Gag/Cag																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874286	155874286	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	110	409	0	ENST00000368323.3:c.245T>G	p.Phe82Cys	p.F82C	ENST00000368323	NM_006912.5	82	tTt/tGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717634	89717647	+	frameshift_variant	Frame_Shift_Del	DEL	TAAAGGTGAAGATA	TAAAGGTGAAGATA	-			P-0019371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	108	495	0	ENST00000371953.3:c.661_674del	p.Lys221PhefsTer17	p.K221Ffs*17	ENST00000371953	NM_000314.4	220	cTAAAGGTGAAGATA/c																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134121	41134121	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	105	343	0	ENST00000379561.5:c.1507del	p.Val503SerfsTer14	p.V503Sfs*14	ENST00000379561	NM_002015.3	503	Gtc/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0019371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	136	720	0	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																																
NFE2L2	4780	MSKCC	GRCh37	2	178098950	178098950	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	48	317	0	ENST00000397062.3:c.95T>G	p.Val32Gly	p.V32G	ENST00000397062	NM_006164.4	32	gTa/gGa																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29092922	29092922	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	132	500	0	ENST00000328354.6:c.1062A>C	p.Leu354Phe	p.L354F	ENST00000328354	NM_007194.3	354	ttA/ttC																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138461563	138461563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	97	456	0	ENST00000289153.2:c.458G>T	p.Arg153Leu	p.R153L	ENST00000289153	NM_006219.2	153	cGc/cTc																																																																															
ATR	545	MSKCC	GRCh37	3	142281370	142281370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	72	513	0	ENST00000350721.4:c.874G>A	p.Glu292Lys	p.E292K	ENST00000350721	NM_001184.3	292	Gaa/Aaa																																																																															
TET2	54790	MSKCC	GRCh37	4	106193743	106193743	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	67	248	0	ENST00000380013.4:c.4205A>G	p.Asp1402Gly	p.D1402G	ENST00000380013	NM_001127208.2	1402	gAc/gGc																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538822	23538822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	102	353	1	ENST00000380871.4:c.617C>T	p.Ser206Phe	p.S206F	ENST00000380871	NM_006167.3	206	tCc/tTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	60	814	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	35	493	2	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	87	752	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	33	513	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	86	609	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372098	55372098	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62642516		P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	66	521	1	ENST00000297316.4:c.788C>T	p.Pro263Leu	p.P263L	ENST00000297316	NM_022454.3	263	cCg/cTg																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740809	58740809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	89	643	0	ENST00000305921.3:c.1714C>T	p.Arg572Ter	p.R572*	ENST00000305921	NM_003620.3	572	Cga/Tga																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841231	15841242	+	inframe_deletion	In_Frame_Del	DEL	AGCCGGAGCCGG	AGCCGGAGCCGG	-			P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	30	115	0	ENST00000307771.7:c.1332_1343delGAGCCGGAGCCG	p.Ser445_Arg448del	p.S445_R448del	ENST00000307771	NM_005089.3	439	AGCCGGAGCCGG/-																																																																															
APC	324	MSKCC	GRCh37	5	112175825	112175825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	20	254	1	ENST00000257430.4:c.4534G>A	p.Asp1512Asn	p.D1512N	ENST00000257430	NM_000038.5	1512	Gat/Aat																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981273	201981329	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGGACCAACTCCATGCCCAGCTGCGAGACCTCAGTGAGTCCAGGCCCCTGGAGGCT	GGGGACCAACTCCATGCCCAGCTGCGAGACCTCAGTGAGTCCAGGCCCCTGGAGGCT	-			P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	35	718	0	ENST00000359651.3:c.357_385+28del		p.X119_splice	ENST00000359651		119																																																																																
TGFBR2	7048	MSKCC	GRCh37	3	30713727	30713727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	82	410	0	ENST00000359013.4:c.1127G>A	p.Gly376Asp	p.G376D	ENST00000359013	NM_001024847.2	376	gGc/gAc																																																																															
ATR	545	MSKCC	GRCh37	3	142218559	142218559	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	22	365	0	ENST00000350721.4:c.5290T>C	p.Ser1764Pro	p.S1764P	ENST00000350721	NM_001184.3	1764	Tcc/Ccc																																																																															
APC	324	MSKCC	GRCh37	5	112175954	112175954	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	24	323	0	ENST00000257430.4:c.4663A>T	p.Lys1555Ter	p.K1555*	ENST00000257430	NM_000038.5	1555	Aaa/Taa																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519666	137519666	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	25	314	0	ENST00000367739.4:c.972G>T	p.Glu324Asp	p.E324D	ENST00000367739	NM_000416.2	324	gaG/gaT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151843748	151843748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	36	463	1	ENST00000262189.6:c.13967C>T	p.Ala4656Val	p.A4656V	ENST00000262189	NM_170606.2	4656	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	16	623	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220488	1220488	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	42	855	0	ENST00000326873.7:c.581A>C	p.Asp194Ala	p.D194A	ENST00000326873	NM_000455.4	194	gAc/gCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0019376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	202	747	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0019376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	140	659	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31376726	31376726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	42	528	4	ENST00000328111.2:c.721G>A	p.Ala241Thr	p.A241T	ENST00000328111	NM_006892.3	241	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	349	1510	2	ENST00000269305.4:c.389T>A	p.Leu130His	p.L130H	ENST00000269305	NM_001126112.2	130	cTc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0019377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	370	904	4	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0019377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	167	605	1	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108141874	108141874	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587781558		P-0019377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	182	459	4	ENST00000278616.4:c.2921+1G>A		p.X974_splice	ENST00000278616	NM_000051.3	974																																																																																
ARAF	369	MSKCC	GRCh37	X	47426737	47426737	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200106543		P-0019377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	115	775	0	ENST00000377045.4:c.982C>T	p.Arg328Trp	p.R328W	ENST00000377045	NM_001654.4	328	Cgg/Tgg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11319346	11319346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	251	580	8	ENST00000361445.4:c.121G>A	p.Ala41Thr	p.A41T	ENST00000361445	NM_004958.3	41	Gcc/Acc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94924728	94924728	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	356	892	0	ENST00000536441.1:c.182T>A	p.Phe61Tyr	p.F61Y	ENST00000536441	NM_144665.3	61	tTt/tAt																																																																															
ATM	472	MSKCC	GRCh37	11	108236083	108236083	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	248	645	7	ENST00000278616.4:c.9019G>T	p.Glu3007Ter	p.E3007*	ENST00000278616	NM_000051.3	3007	Gaa/Taa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120490	70120491	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	557	1311	1	ENST00000245479.2:c.1495dup	p.Glu499GlyfsTer79	p.E499Gfs*79	ENST00000245479	NM_000346.3	498	tgg/tGgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573661	48573711	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCAGGTTAGTCTTATAAGAGTTTTTCTATACCCTCTATGGTGGCAGATTT	TTCAGGTTAGTCTTATAAGAGTTTTTCTATACCCTCTATGGTGGCAGATTT	-			P-0019377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	34	408	2	ENST00000342988.3:c.245_249+46del		p.X82_splice	ENST00000342988	NM_005359.5	82																																																																																
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0019378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	154	763	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	252	643	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371799	55371820	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCCGCGCTGGGCCCCGAG	GGCGGCCGCGCTGGGCCCCGAG	-			P-0019378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	67	138	0	ENST00000297316.4:c.499_520del	p.Leu167TrpfsTer213	p.L167Wfs*213	ENST00000297316	NM_022454.3	163	caGGCGGCCGCGCTGGGCCCCGAG/ca																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138402532	138402532	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0019378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	227	508	0	ENST00000289153.2:c.2413A>T	p.Lys805Ter	p.K805*	ENST00000289153	NM_006219.2	805	Aaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	72	573	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49422700	49422700	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	85	634	0	ENST00000301067.7:c.14293G>T	p.Val4765Phe	p.V4765F	ENST00000301067	NM_003482.3	4765	Gtc/Ttc																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68292215	68292219	+	frameshift_variant	Frame_Shift_Del	DEL	AGGTG	AGGTG	GTTA			P-0019384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	43	404	0	ENST00000487270.1:c.119_123delinsGTTA	p.Lys40SerfsTer2	p.K40Sfs*2	ENST00000487270	NM_133509.3	40	aAGGTG/aGTTA																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120341	70120341	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1636	177	1320	0	ENST00000245479.2:c.1343C>A	p.Ser448Tyr	p.S448Y	ENST00000245479	NM_000346.3	448	tCc/tAc																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17389754	17389754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1179	128	914	3	ENST00000359435.4:c.887C>T	p.Ala296Val	p.A296V	ENST00000359435	NM_001033549.1	296	gCg/gTg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981858	70981858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	104	848	2	ENST00000276594.2:c.238C>T	p.Pro80Ser	p.P80S	ENST00000276594	NM_024504.3	80	Ccg/Tcg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044278	47044778	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGAAAGGTGGTCAGGAGCCGTAGCCCAGAGGCCAGATGAAGCCTTCTGCAGTGGTTCGGACTAGGGATAGTGGCTGGCCCGTGTTTGAGGATGCAGGGCAGTGGGTCAGCAGATAGAGTTAGTAGCCCCAGGGTCATGAGGGTTCTGGGAACCTCACCTCCACCCTCACCCCCAGATTGCCAAGGACATGGAACGCTGGGCCCGCAGTCTCAACAAACAAAAAGAAAACTTCAAAAATAGCTTCCAGCCTATCAGCTCCCTGCGAGATGACGAGAGGCGGGAGTCAGCCACTGCAGATGCTGGCTATGCCATCCTCGAGAAGAAGGTGTGTTGGGGCCACCCCCCTGCACCCTGCCCCACAATCTTGTCCTTCCTTTGGGCCCTCTGTGGAGTCCCTGAATTTCTGTGTCCCTCCACCCCAGGGAGCACTAGCCGAGAGACAGCACACCAGCATGGATCTCCCGAAATTGGCCAGTGACGACCGCCCAGTGAGTGCCCAA	GGGAAAGGTGGTCAGGAGCCGTAGCCCAGAGGCCAGATGAAGCCTTCTGCAGTGGTTCGGACTAGGGATAGTGGCTGGCCCGTGTTTGAGGATGCAGGGCAGTGGGTCAGCAGATAGAGTTAGTAGCCCCAGGGTCATGAGGGTTCTGGGAACCTCACCTCCACCCTCACCCCCAGATTGCCAAGGACATGGAACGCTGGGCCCGCAGTCTCAACAAACAAAAAGAAAACTTCAAAAATAGCTTCCAGCCTATCAGCTCCCTGCGAGATGACGAGAGGCGGGAGTCAGCCACTGCAGATGCTGGCTATGCCATCCTCGAGAAGAAGGTGTGTTGGGGCCACCCCCCTGCACCCTGCCCCACAATCTTGTCCTTCCTTTGGGCCCTCTGTGGAGTCCCTGAATTTCTGTGTCCCTCCACCCCAGGGAGCACTAGCCGAGAGACAGCACACCAGCATGGATCTCCCGAAATTGGCCAGTGACGACCGCCCAGTGAGTGCCCAA	-			P-0019384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	37	63	0	ENST00000329236.7:c.1717-174_1932+14del		p.X573_splice	ENST00000329236	NM_001204466.1	573																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	117	421	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0019385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	444	518	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
PTEN	5728	MSKCC	GRCh37	10	89725041	89725046	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAGGTG	TAGGTG	-			P-0019385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	99	269	0	ENST00000371953.3:c.1027-3_1029del		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56177707	56177708	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	162	327	0	ENST00000399503.3:c.2681dup	p.Glu895GlyfsTer9	p.E895Gfs*9	ENST00000399503	NM_005921.1	894	ctg/cTtg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929090	44929090	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1250	199	589	0	ENST00000377967.4:c.2191del	p.Ser731AlafsTer24	p.S731Afs*24	ENST00000377967	NM_021140.2	730	acA/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	47	742	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0019389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	71	1020	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81972458	81972458	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	44	603	0	ENST00000359376.3:c.3251T>C	p.Phe1084Ser	p.F1084S	ENST00000359376	NM_002661.3	1084	tTt/tCt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600369	10600369	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	668	1306	0	ENST00000171111.5:c.1486G>T	p.Glu496Ter	p.E496*	ENST00000171111	NM_203500.1	496	Gag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097703	27097703	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	477	939	0	ENST00000324856.7:c.3292C>T	p.Gln1098Ter	p.Q1098*	ENST00000324856	NM_006015.4	1098	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	748	1008	4	ENST00000269305.4:c.592del	p.Glu198LysfsTer49	p.E198Kfs*49	ENST00000269305	NM_001126112.2	198	Gaa/aa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246344	46246344	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	230	445	0	ENST00000334344.6:c.4438G>T	p.Gly1480Ter	p.G1480*	ENST00000334344	NM_152641.2	1480	Gga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40727138	40727138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	228	799	2	ENST00000373198.4:c.3826G>A	p.Val1276Met	p.V1276M	ENST00000373198	NM_133170.3	1276	Gtg/Atg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797731	45797731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	536	1036	0	ENST00000372115.3:c.919G>T	p.Gly307Trp	p.G307W	ENST00000372115	NM_001048171.1	307	Ggg/Tgg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465304	120465304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	169	620	0	ENST00000256646.2:c.4957C>T	p.His1653Tyr	p.H1653Y	ENST00000256646	NM_024408.3	1653	Cac/Tac																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466420	120466420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	163	782	0	ENST00000256646.2:c.4699C>T	p.Arg1567Trp	p.R1567W	ENST00000256646	NM_024408.3	1567	Cgg/Tgg																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612644	228612644	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	394	965	0	ENST00000366696.1:c.383C>A	p.Ala128Glu	p.A128E	ENST00000366696	NM_003493.2	128	gCa/gAa																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17743028	17743028	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	572	1208	0	ENST00000250003.3:c.939del	p.Asn314ThrfsTer22	p.N314Tfs*22	ENST00000250003	NM_002478.4	312	aaC/aa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943789	71943789	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1176	257	913	1	ENST00000298229.2:c.1832G>T	p.Arg611Leu	p.R611L	ENST00000298229	NM_001567.3	611	cGc/cTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307567	118307567	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	428	858	0	ENST00000534358.1:c.340G>C	p.Ala114Pro	p.A114P	ENST00000534358	NM_005933.3	114	Gcg/Ccg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244897	46244898	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	194	787	1	ENST00000334344.6:c.2991_2992delinsTT	p.Gln997_Gly998delinsHisTer	p.Q997_G998delinsH*	ENST00000334344	NM_152641.2	997	caGGga/caTTga																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557489	21557489	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	594	731	0	ENST00000382592.4:c.2356G>T	p.Gly786Cys	p.G786C	ENST00000382592	NM_014572.2	786	Ggc/Tgc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434920	110434920	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	451	1735	1	ENST00000375856.3:c.3481G>T	p.Val1161Leu	p.V1161L	ENST00000375856	NM_003749.2	1161	Gtg/Ttg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068922	30068922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1445	538	1158	2	ENST00000331968.5:c.2007G>A	p.Met669Ile	p.M669I	ENST00000331968	NM_002742.2	669	atG/atA																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30102103	30102103	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	422	855	0	ENST00000331968.5:c.1364A>T	p.Gln455Leu	p.Q455L	ENST00000331968	NM_002742.2	455	cAg/cTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95557417	95557417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	3709	604	1	ENST00000343455.3:c.5557C>T	p.Pro1853Ser	p.P1853S	ENST00000343455	NM_177438.2	1853	Cct/Tct																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38591732	38591732	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	250	603	0	ENST00000299084.4:c.191G>T	p.Arg64Leu	p.R64L	ENST00000299084	NM_152594.2	64	cGa/cTa																																																																															
MGA	23269	MSKCC	GRCh37	15	42053936	42053936	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	335	450	0	ENST00000219905.7:c.7399-1G>T		p.X2467_splice	ENST00000219905	NM_001164273.1	2467																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	10273887	10273887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	542	1191	2	ENST00000330684.3:c.382C>A	p.His128Asn	p.H128N	ENST00000330684	NM_001134407.1	128	Cat/Aat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993917	72993917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	180	726	1	ENST00000268489.5:c.128C>T	p.Thr43Ile	p.T43I	ENST00000268489	NM_006885.3	43	aCa/aTa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16001772	16001772	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	225	884	0	ENST00000268712.3:c.2729C>G	p.Pro910Arg	p.P910R	ENST00000268712	NM_006311.3	910	cCc/cGc																																																																															
NF1	4763	MSKCC	GRCh37	17	29509524	29509524	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	147	629	2	ENST00000358273.4:c.731-2A>T		p.X244_splice	ENST00000358273	NM_001042492.2	244																																																																																
NF1	4763	MSKCC	GRCh37	17	29550561	29550561	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	147	663	1	ENST00000358273.4:c.1821G>T	p.Arg607Ser	p.R607S	ENST00000358273	NM_001042492.2	607	agG/agT																																																																															
NF1	4763	MSKCC	GRCh37	17	29663795	29663795	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	452	721	0	ENST00000358273.4:c.6290del	p.Ala2097GlufsTer14	p.A2097Efs*14	ENST00000358273	NM_001042492.2	2097	gCa/ga																																																																															
NF1	4763	MSKCC	GRCh37	17	29676236	29676236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	319	675	0	ENST00000358273.4:c.7288G>A	p.Glu2430Lys	p.E2430K	ENST00000358273	NM_001042492.2	2430	Gaa/Aaa																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40354384	40354384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1216	405	1638	1	ENST00000293328.3:c.2211G>T	p.Gln737His	p.Q737H	ENST00000293328	NM_012448.3	737	caG/caT																																																																															
INSR	3643	MSKCC	GRCh37	19	7117083	7117083	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	311	890	0	ENST00000302850.5:c.4133G>C	p.Arg1378Pro	p.R1378P	ENST00000302850	NM_000208.2	1378	cGg/cCg																																																																															
CIC	23152	MSKCC	GRCh37	19	42795456	42795456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	161	684	0	ENST00000575354.2:c.2536C>T	p.Pro846Ser	p.P846S	ENST00000575354	NM_015125.3	846	Cct/Tct																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25990466	25990466	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	323	624	0	ENST00000435504.4:c.761A>T	p.Glu254Val	p.E254V	ENST00000435504		254	gAg/gTg																																																																															
ALK	238	MSKCC	GRCh37	2	30142907	30142907	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1249	549	1424	0	ENST00000389048.3:c.619del	p.Ala207GlnfsTer42	p.A207Qfs*42	ENST00000389048	NM_004304.4	207	Gca/ca																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251632	212251632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	105	518	0	ENST00000342788.4:c.3427G>A	p.Gly1143Arg	p.G1143R	ENST00000342788	NM_005235.2	1143	Gga/Aga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530141	212530141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	230	553	0	ENST00000342788.4:c.1778G>A	p.Cys593Tyr	p.C593Y	ENST00000342788	NM_005235.2	593	tGt/tAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212652850	212652850	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	139	600	0	ENST00000342788.4:c.456C>G	p.Asn152Lys	p.N152K	ENST00000342788	NM_005235.2	152	aaC/aaG																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546689	9546689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	109	418	0	ENST00000353224.5:c.1333C>A	p.Pro445Thr	p.P445T	ENST00000353224	NM_177990.2	445	Ccc/Acc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739028	40739029	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	186	840	1	ENST00000373198.4:c.3255_3256delinsAA	p.Arg1086Ser	p.R1086S	ENST00000373198	NM_133170.3	1085	gtCCgc/gtAAgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743933	40743933	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	174	678	0	ENST00000373198.4:c.3062C>G	p.Pro1021Arg	p.P1021R	ENST00000373198	NM_133170.3	1021	cCa/cGa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41408909	41408909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	163	714	0	ENST00000373198.4:c.517C>A	p.His173Asn	p.H173N	ENST00000373198	NM_133170.3	173	Cat/Aat																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62294240	62294240	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	235	988	0	ENST00000508582.2:c.608A>G	p.Glu203Gly	p.E203G	ENST00000508582		203	gAa/gGa																																																																															
PPARG	5468	MSKCC	GRCh37	3	12475489	12475489	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	515	994	3	ENST00000287820.6:c.1363G>T	p.Glu455Ter	p.E455*	ENST00000287820	NM_015869.4	455	Gag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480460	89480460	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	130	479	0	ENST00000336596.2:c.2297G>T	p.Gly766Val	p.G766V	ENST00000336596	NM_005233.5	766	gGa/gTa																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665062	138665062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	89	262	0	ENST00000330315.3:c.503G>A	p.Gly168Glu	p.G168E	ENST00000330315	NM_023067.3	168	gGg/gAg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957525	1957525	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	331	1022	0	ENST00000382891.5:c.2624G>T	p.Gly875Val	p.G875V	ENST00000382891	NM_133335.3	875	gGg/gTg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127312	55127312	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	404	795	2	ENST00000257290.5:c.100G>T	p.Glu34Ter	p.E34*	ENST00000257290	NM_006206.4	34	Gaa/Taa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31472187	31472187	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	557	1119	0	ENST00000344624.3:c.2224G>C	p.Val742Leu	p.V742L	ENST00000344624		742	Gtt/Ctt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67590996	67590996	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	78	269	0	ENST00000274335.5:c.1589A>G	p.Lys530Arg	p.K530R	ENST00000274335		530	aAg/aGg																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225758	26225758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	242	578	1	ENST00000360408.1:c.376C>A	p.Gln126Lys	p.Q126K	ENST00000360408	NM_003532.2	126	Cag/Aag																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778236	27778236	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	142	637	0	ENST00000369163.2:c.385C>G	p.Arg129Gly	p.R129G	ENST00000369163	NM_003536.2	129	Cgt/Ggt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180948	32180948	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	213	794	0	ENST00000375023.3:c.2402G>T	p.Arg801Leu	p.R801L	ENST00000375023	NM_004557.3	801	cGc/cTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180997	32180997	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1190	283	1043	0	ENST00000375023.3:c.2353A>T	p.Arg785Trp	p.R785W	ENST00000375023	NM_004557.3	785	Agg/Tgg																																																																															
FYN	2534	MSKCC	GRCh37	6	111995804	111995804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	309	621	1	ENST00000368678.4:c.1294C>T	p.Pro432Ser	p.P432S	ENST00000368678		432	Ccc/Tcc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162622209	162622209	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	149	512	0	ENST00000366898.1:c.488G>T	p.Arg163Met	p.R163M	ENST00000366898	NM_004562.2	163	aGg/aTg																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540357	23540357	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	165	607	1	ENST00000380871.4:c.46G>T	p.Gly16Trp	p.G16W	ENST00000380871	NM_006167.3	16	Ggg/Tgg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141572599	141572599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	259	932	1	ENST00000220592.5:c.471G>T	p.Glu157Asp	p.E157D	ENST00000220592	NM_012154.3	157	gaG/gaT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484199	8484199	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	330	697	0	ENST00000356435.5:c.3333G>T	p.Lys1111Asn	p.K1111N	ENST00000356435		1111	aaG/aaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	254	666	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578504	7578540	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTG	AGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTG	-			P-0019392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	223	1247	0	ENST00000269305.4:c.390_426del	p.Asn131CysfsTer27	p.N131Cfs*27	ENST00000269305	NM_001126112.2	130	ctCAACAAGATGTTTTGCCAACTGGCCAAGACCTGCCCT/ct																																																																															
SDHD	6392	MSKCC	GRCh37	11	111959704	111959704	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	182	631	0	ENST00000375549.3:c.283C>G	p.Leu95Val	p.L95V	ENST00000375549	NM_003002.3	95	Ctg/Gtg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492739	56492739	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	139	770	0	ENST00000407977.2:c.200del	p.Gly67ValfsTer9	p.G67Vfs*9	ENST00000407977		67	gGt/gt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248684	212248684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	29	444	0	ENST00000342788.4:c.3583C>T	p.Pro1195Ser	p.P1195S	ENST00000342788	NM_005235.2	1195	Cca/Tca																																																																															
CDK4	1019	MSKCC	GRCh37	12	58143020	58143020	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	92	756	1	ENST00000257904.6:c.764G>T	p.Arg255Leu	p.R255L	ENST00000257904	NM_000075.3	255	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579191	7579367	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAAACACTGACAGGAAGCCAAAGGGTGAAGAGGAATCCCAAAGTTCCAAACAAAAGAAATGCAGGGGGATACGGCCAGGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAGAAGCCCAGACGGAAACCGT	AAAAACACTGACAGGAAGCCAAAGGGTGAAGAGGAATCCCAAAGTTCCAAACAAAAGAAATGCAGGGGGATACGGCCAGGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAGAAGCCCAGACGGAAACCGT	-			P-0019411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	72	72	0	ENST00000269305.4:c.320_375+121del		p.X107_splice	ENST00000269305	NM_001126112.2	107																																																																																
NF1	4763	MSKCC	GRCh37	17	29528151	29528151	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	190	761	0	ENST00000358273.4:c.1159A>T	p.Ser387Cys	p.S387C	ENST00000358273	NM_001042492.2	387	Agc/Tgc																																																																															
TEK	7010	MSKCC	GRCh37	9	27217702	27217702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	290	647	0	ENST00000380036.4:c.3008G>A	p.Arg1003His	p.R1003H	ENST00000380036	NM_000459.3	1003	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0019414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	402	798	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134768	41134768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	194	372	1	ENST00000379561.5:c.860G>A	p.Ser287Asn	p.S287N	ENST00000379561	NM_002015.3	287	aGc/aAc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082203	16082203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	464	1061	0	ENST00000281043.3:c.17C>A	p.Thr6Lys	p.T6K	ENST00000281043	NM_005378.4	6	aCg/aAg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702215	47702215	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	351	644	0	ENST00000233146.2:c.1811C>G	p.Ala604Gly	p.A604G	ENST00000233146	NM_000251.2	604	gCt/gGt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026894	48026894	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	194	384	0	ENST00000234420.5:c.1772C>A	p.Pro591Gln	p.P591Q	ENST00000234420	NM_000179.2	591	cCa/cAa																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794912	242794912	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	839	789	0	ENST00000334409.5:c.297A>T	p.Gln99His	p.Q99H	ENST00000334409	NM_005018.2	99	caA/caT																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62290777	62290777	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	135	269	0	ENST00000508582.2:c.22G>T	p.Gly8Cys	p.G8C	ENST00000508582		8	Ggt/Tgt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86642539	86642539	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0019414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	66	387	0	ENST00000274376.6:c.1100C>A	p.Thr367Lys	p.T367K	ENST00000274376	NM_002890.2	367	aCa/aAa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637211	176637211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	290	678	1	ENST00000439151.2:c.1811G>A	p.Arg604Gln	p.R604Q	ENST00000439151	NM_022455.4	604	cGa/cAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273152	55273152	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	310	620	1	ENST00000275493.2:c.3475C>T	p.Gln1159Ter	p.Q1159*	ENST00000275493	NM_005228.3	1159	Cag/Tag																																																																															
ERG	2078	MSKCC	GRCh37	21	39764346	39764348	+	frameshift_variant	Frame_Shift_Ins	INS	TGG	TGG	CGGA			P-0019414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	277	648	0	ENST00000288319.7:c.764_766delinsTCCG	p.Pro255LeufsTer30	p.P255Lfs*30	ENST00000288319	NM_182918.3	255	cCCAgg/cTCCGgg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838320	156838320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1210	91	1150	0	ENST00000524377.1:c.598G>T	p.Val200Leu	p.V200L	ENST00000524377	NM_002529.3	200	Gtg/Ttg																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631881	90631881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	71	1096	0	ENST00000330062.3:c.472C>T	p.Pro158Ser	p.P158S	ENST00000330062	NM_002168.2	158	Cca/Tca																																																																															
NF1	4763	MSKCC	GRCh37	17	29576103	29576104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	46	834	0	ENST00000358273.4:c.4077dup	p.Gln1360SerfsTer20	p.Q1360Sfs*20	ENST00000358273	NM_001042492.2	1359	cct/ccTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29654566	29654566	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	48	458	0	ENST00000358273.4:c.5318del	p.Leu1773GlnfsTer7	p.L1773Qfs*7	ENST00000358273	NM_001042492.2	1773	cTa/ca																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945786	17945786	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	73	992	0	ENST00000458235.1:c.2074G>T	p.Ala692Ser	p.A692S	ENST00000458235	NM_000215.3	692	Gcc/Tcc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87325629	87325629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	48	689	1	ENST00000277120.3:c.506C>T	p.Pro169Leu	p.P169L	ENST00000277120		169	cCa/cTa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044469	47044469	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1159	76	1046	1	ENST00000329236.7:c.1732G>T	p.Glu578Ter	p.E578*	ENST00000329236	NM_001204466.1	578	Gaa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29528097	29528097	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	86	492	0	ENST00000358273.4:c.1105C>T	p.Gln369Ter	p.Q369*	ENST00000358273	NM_001042492.2	369	Cag/Tag																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30326004	30326005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769517721		P-0019419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	91	537	0	ENST00000322652.5:c.2208dup	p.Gln737ThrfsTer20	p.Q737Tfs*20	ENST00000322652	NM_015355.2	734	-/A																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627487	37627487	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	126	800	0	ENST00000447079.4:c.1402C>G	p.Leu468Val	p.L468V	ENST00000447079	NM_015083.1	468	Cta/Gta																																																																															
POLD1	5424	MSKCC	GRCh37	19	50921197	50921197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	114	793	0	ENST00000440232.2:c.3317C>A	p.Ala1106Asp	p.A1106D	ENST00000440232	NM_002691.3	1106	gCc/gAc																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778050	27778050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	51	367	0	ENST00000369163.2:c.199C>T	p.Pro67Ser	p.P67S	ENST00000369163	NM_003536.2	67	Cct/Tct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268993	55268993	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1273	251	851	0	ENST00000275493.2:c.3059A>G	p.Gln1020Arg	p.Q1020R	ENST00000275493	NM_005228.3	1020	cAg/cGg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117874171	117874171	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	203	526	0	ENST00000297338.2:c.283G>C	p.Asp95His	p.D95H	ENST00000297338	NM_006265.2	95	Gac/Cac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	216	531	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100338	27100339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCAGCCCCTTCC			P-0019425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	245	759	0	ENST00000324856.7:c.4051_4063dup	p.Pro1355ArgfsTer94	p.P1355Rfs*94	ENST00000324856	NM_006015.4	1350	-/GGCAGCCCCTTCC																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354339	354339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1283	309	891	0	ENST00000262320.3:c.1219G>A	p.Glu407Lys	p.E407K	ENST00000262320	NM_003502.3	407	Gag/Aag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259095	89259095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	160	352	0	ENST00000336596.2:c.239A>G	p.Asn80Ser	p.N80S	ENST00000336596	NM_005233.5	80	aAt/aGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919285	178919285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	102	337	0	ENST00000263967.3:c.770G>A	p.Cys257Tyr	p.C257Y	ENST00000263967	NM_006218.2	257	tGt/tAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845366	151845366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	103	640	1	ENST00000262189.6:c.13646G>A	p.Arg4549His	p.R4549H	ENST00000262189	NM_170606.2	4549	cGc/cAc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	119	527	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	382	838	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12633229	12633229	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	113	720	0	ENST00000251849.4:c.1171A>T	p.Arg391Trp	p.R391W	ENST00000251849	NM_002880.3	391	Agg/Tgg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28595728	28595728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1325	71	990	1	ENST00000253063.3:c.125G>A	p.Arg42Gln	p.R42Q	ENST00000253063	NM_031459.4	42	cGa/cAa																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073980	8073980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	40	476	0	ENST00000377482.5:c.679G>A	p.Asp227Asn	p.D227N	ENST00000377482	NM_018948.3	227	Gac/Aac																																																																															
SDHB	6390	MSKCC	GRCh37	1	17359555	17359555	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	218	690	0	ENST00000375499.3:c.286G>T	p.Gly96Cys	p.G96C	ENST00000375499	NM_003000.2	96	Ggc/Tgc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741665	17741665	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	59	746	1	ENST00000250003.3:c.336G>T	p.Lys112Asn	p.K112N	ENST00000250003	NM_002478.4	112	aaG/aaT																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943938	71943938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	521	985	2	ENST00000298229.2:c.1871G>T	p.Ser624Ile	p.S624I	ENST00000298229	NM_001567.3	624	aGc/aTc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230669	46230669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	69	553	0	ENST00000334344.6:c.918G>T	p.Leu306Phe	p.L306F	ENST00000334344	NM_152641.2	306	ttG/ttT																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246012	46246012	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	97	514	1	ENST00000334344.6:c.4106G>T	p.Gly1369Val	p.G1369V	ENST00000334344	NM_152641.2	1369	gGt/gTt																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112893865	112893865	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	50	768	0	ENST00000351677.2:c.754G>A	p.Glu252Lys	p.E252K	ENST00000351677	NM_002834.3	252	Gag/Aag																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549410	21549410	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	196	494	0	ENST00000382592.4:c.2866G>T	p.Asp956Tyr	p.D956Y	ENST00000382592	NM_014572.2	956	Gac/Tac																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483882	88483882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	101	925	1	ENST00000360948.2:c.1688C>A	p.Thr563Asn	p.T563N	ENST00000360948	NM_001012338.2	563	aCc/aAc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641320	23641320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	114	901	0	ENST00000261584.4:c.2155C>T	p.Pro719Ser	p.P719S	ENST00000261584	NM_024675.3	719	Cct/Tct																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671683	67671683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	87	806	0	ENST00000264010.4:c.2092G>A	p.Glu698Lys	p.E698K	ENST00000264010	NM_006565.3	698	Gag/Aag																																																																															
FLCN	201163	MSKCC	GRCh37	17	17117121	17117121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	69	755	1	ENST00000285071.4:c.1588G>A	p.Glu530Lys	p.E530K	ENST00000285071	NM_144997.5	530	Gag/Aag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687037	37687037	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	79	746	2	ENST00000447079.4:c.3941G>T	p.Gly1314Val	p.G1314V	ENST00000447079	NM_015083.1	1314	gGc/gTc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39609292	39609292	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	45	419	0	ENST00000262039.4:c.1594G>C	p.Asp532His	p.D532H	ENST00000262039	NM_002647.2	532	Gat/Cat																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379676	17379676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	193	707	1	ENST00000359435.4:c.61G>A	p.Ala21Thr	p.A21T	ENST00000359435	NM_001033549.1	21	Gca/Aca																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45856065	45856065	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	150	879	0	ENST00000391945.4:c.1841A>C	p.Tyr614Ser	p.Y614S	ENST00000391945	NM_000400.3	614	tAc/tCc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212578280	212578280	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	114	819	0	ENST00000342788.4:c.977G>T	p.Cys326Phe	p.C326F	ENST00000342788	NM_005235.2	326	tGc/tTc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31372576	31372576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	71	741	0	ENST00000328111.2:c.217G>A	p.Asp73Asn	p.D73N	ENST00000328111	NM_006892.3	73	Gat/Aat																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42861469	42861469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	75	729	2	ENST00000398585.3:c.401G>A	p.Gly134Glu	p.G134E	ENST00000398585	NM_001135099.1	134	gGa/gAa																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748119	41748119	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	65	222	0	ENST00000226382.2:c.650G>T	p.Gly217Val	p.G217V	ENST00000226382	NM_003924.3	217	gGg/gTg																																																																															
KIT	3815	MSKCC	GRCh37	4	55599347	55599347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	106	598	0	ENST00000288135.5:c.2473G>T	p.Val825Phe	p.V825F	ENST00000288135	NM_000222.2	825	Gtt/Ttt																																																																															
KDR	3791	MSKCC	GRCh37	4	55961058	55961058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199904772		P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	142	1033	3	ENST00000263923.4:c.2882G>A	p.Arg961Gln	p.R961Q	ENST00000263923	NM_002253.2	961	cGg/cAg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576465	67576465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	146	637	1	ENST00000274335.5:c.744C>A	p.Phe248Leu	p.F248L	ENST00000274335		248	ttC/ttA																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048237	180048237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	403	1217	3	ENST00000261937.6:c.2036G>A	p.Arg679Gln	p.R679Q	ENST00000261937	NM_182925.4	679	cGg/cAg																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43742102	43742102	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	143	985	0	ENST00000523873.1:c.91G>C	p.Glu31Gln	p.E31Q	ENST00000523873		31	Gaa/Caa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729399	41729399	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	189	747	0	ENST00000242208.4:c.1130G>C	p.Arg377Pro	p.R377P	ENST00000242208	NM_002192.2	377	cGc/cCc																																																																															
HGF	3082	MSKCC	GRCh37	7	81358967	81358967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	122	699	0	ENST00000222390.5:c.994C>A	p.Gln332Lys	p.Q332K	ENST00000222390	NM_000601.4	332	Cag/Aag																																																																															
LYN	4067	MSKCC	GRCh37	8	56863249	56863249	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	71	842	0	ENST00000519728.1:c.393C>G	p.Phe131Leu	p.F131L	ENST00000519728	NM_002350.3	131	ttC/ttG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0019427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	68	823	5	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	86	716	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699447	117699454	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAGTTT	GAAAGTTT	-			P-0019427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	48	570	0	ENST00000369458.3:c.187_194del	p.Lys63Ter	p.K63*	ENST00000369458	NM_024626.3	63	AAACTTTCt/t																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125497572	125497572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	51	493	0	ENST00000428830.2:c.136G>A	p.Val46Ile	p.V46I	ENST00000428830	NM_001114121.2	46	Gta/Ata																																																																															
MYC	4609	MSKCC	GRCh37	8	128750560	128750560	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	92	768	1	ENST00000377970.2:c.97T>A	p.Ser33Thr	p.S33T	ENST00000377970	NM_002467.4	33	Tcg/Acg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	132	695	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	92	676	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	85	681	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	186	839	1	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103755	47103756	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	44	586	4	ENST00000409792.3:c.6190_6191delGA	p.Asp2064ProfsTer8	p.D2064Pfs*8	ENST00000409792	NM_014159.6	2064	GAc/c																																																																															
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	35	418	0	ENST00000342505.4:c.1016delA	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	42	1014	2	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																															
NF1	4763	MSKCC	GRCh37	17	29553478	29553478	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	186	922	7	ENST00000358273.4:c.2033delC	p.Pro678ArgfsTer10	p.P678Rfs*10	ENST00000358273	NM_001042492.2	676	aCc/ac																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78919545	78919545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	38	533	0	ENST00000306801.3:c.3104C>T	p.Thr1035Met	p.T1035M	ENST00000306801	NM_020761.2	1035	aCg/aTg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	167	736	6	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	194	618	24	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	159	809	8	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	45	729	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736165	204736166	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	104	543	0	ENST00000302823.3:c.529dupT	p.Tyr177LeufsTer2	p.Y177Lfs*2	ENST00000302823	NM_005214.4	174	-/T																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169934	32169934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	329	862	0	ENST00000375023.3:c.3674G>A	p.Arg1225Gln	p.R1225Q	ENST00000375023	NM_004557.3	1225	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106917	27106917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	63	501	0	ENST00000324856.7:c.6532del	p.Asp2178ThrfsTer22	p.D2178Tfs*22	ENST00000324856	NM_006015.4	2176	caG/ca																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911172	29911172	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	197	446	0	ENST00000376809.5:c.471G>A	p.Trp157Ter	p.W157*	ENST00000376809	NM_002116.7	157	tgG/tgA																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225657	26225657	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202067024		P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	261	508	0	ENST00000360408.1:c.275C>T	p.Ala92Val	p.A92V	ENST00000360408	NM_003532.2	92	gCg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817720	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	59	538	0	ENST00000262367.5:c.3250dupA	p.Ile1084AsnfsTer3	p.I1084Nfs*3	ENST00000262367	NM_004380.2	1084	atc/aAtc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275420	38275420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	231	984	1	ENST00000425967.3:c.1613G>A	p.Arg538His	p.R538H	ENST00000425967	NM_001174067.1	538	cGt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	121	934	2	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78444685	78444685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	148	496	2	ENST00000370768.2:c.4G>A	p.Ala2Thr	p.A2T	ENST00000370768	NM_003902.3	2	Gca/Aca																																																																															
SDHC	6391	MSKCC	GRCh37	1	161326623	161326623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	147	869	0	ENST00000367975.2:c.398G>A	p.Arg133Gln	p.R133Q	ENST00000367975	NM_003001.3	133	cGa/cAa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692803	89692803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	82	488	0	ENST00000371953.3:c.287C>A	p.Pro96Gln	p.P96Q	ENST00000371953	NM_000314.4	96	cCa/cAa																																																																															
SUFU	51684	MSKCC	GRCh37	10	104353757	104353757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	124	637	0	ENST00000369902.3:c.691G>A	p.Gly231Ser	p.G231S	ENST00000369902	NM_016169.3	231	Ggc/Agc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118365112	118365112	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	108	611	1	ENST00000534358.1:c.5288G>A	p.Arg1763Gln	p.R1763Q	ENST00000534358	NM_005933.3	1763	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425784	49425784	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	135	555	0	ENST00000301067.7:c.12704A>G	p.Gln4235Arg	p.Q4235R	ENST00000301067	NM_003482.3	4235	cAg/cGg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446166	49446166	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	88	798	0	ENST00000301067.7:c.1300del	p.Leu434Ter	p.L434*	ENST00000301067	NM_003482.3	434	Cta/ta																																																																															
FLT3	2322	MSKCC	GRCh37	13	28599048	28599048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	56	713	0	ENST00000241453.7:c.2240C>T	p.Pro747Leu	p.P747L	ENST00000241453	NM_004119.2	747	cCg/cTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436792	110436792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	52	1093	2	ENST00000375856.3:c.1609G>A	p.Gly537Ser	p.G537S	ENST00000375856	NM_003749.2	537	Ggt/Agt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639156	3639156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	48	885	3	ENST00000294008.3:c.4483G>A	p.Ala1495Thr	p.A1495T	ENST00000294008	NM_032444.2	1495	Gcg/Acg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639540	3639540	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs17136464		P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	88	920	2	ENST00000294008.3:c.4099G>A	p.Ala1367Thr	p.A1367T	ENST00000294008	NM_032444.2	1367	Gcc/Acc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004813	16004813	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	182	737	2	ENST00000268712.3:c.2441del	p.Pro814HisfsTer13	p.P814Hfs*13	ENST00000268712	NM_006311.3	814	cCa/ca																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245848	41245848	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	84	756	0	ENST00000357654.3:c.1700del	p.Asn567IlefsTer5	p.N567Ifs*5	ENST00000357654	NM_007294.3	567	aAt/at																																																																															
CARM1	10498	MSKCC	GRCh37	19	10982557	10982557	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	27	285	0	ENST00000327064.4:c.179T>C	p.Val60Ala	p.V60A	ENST00000327064	NM_199141.1	60	gTg/gCg																																																																															
CIC	23152	MSKCC	GRCh37	19	42794440	42794440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	124	1085	3	ENST00000575354.2:c.1520G>A	p.Arg507His	p.R507H	ENST00000575354	NM_015125.3	507	cGc/cAc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46609156	46609156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	159	922	4	ENST00000263734.3:c.2215C>T	p.Arg739Trp	p.R739W	ENST00000263734	NM_001430.4	739	Cgg/Tgg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212587222	212587222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	108	647	0	ENST00000342788.4:c.779C>T	p.Thr260Ile	p.T260I	ENST00000342788	NM_005235.2	260	aCt/aTt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212652834	212652834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	81	636	0	ENST00000342788.4:c.472G>A	p.Ala158Thr	p.A158T	ENST00000342788	NM_005235.2	158	Gca/Aca																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242800938	242800938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	116	873	2	ENST00000334409.5:c.53G>A	p.Gly18Asp	p.G18D	ENST00000334409	NM_005018.2	18	gGc/gAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41546066	41546066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	97	799	0	ENST00000263253.7:c.2681C>T	p.Pro894Leu	p.P894L	ENST00000263253	NM_001429.3	894	cCc/cTc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38946623	38946623	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	31	568	0	ENST00000357387.3:c.4346del	p.Asn1449ThrfsTer28	p.N1449Tfs*28	ENST00000357387	NM_152756.3	1449	aAc/ac																																																																															
MSH3	4437	MSKCC	GRCh37	5	80083386	80083386	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G	rs150446804		P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	56	703	0	ENST00000265081.6:c.2438A>G	p.Lys813Arg	p.K813R	ENST00000265081	NM_002439.4	813	aAa/aGa																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27840020	27840020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	27	346	0	ENST00000328488.2:c.74C>T	p.Ala25Val	p.A25V	ENST00000328488	NM_003533.2	25	gCg/gTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509177	106509177	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	75	642	2	ENST00000359195.3:c.1171C>T	p.Gln391Ter	p.Q391*	ENST00000359195	NM_002649.2	391	Caa/Taa																																																																															
SMO	6608	MSKCC	GRCh37	7	128845240	128845240	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	83	488	0	ENST00000249373.3:c.734C>T	p.Thr245Met	p.T245M	ENST00000249373	NM_005631.4	245	aCg/aTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21994329	21994329	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	118	546	1	ENST00000361570.3:c.125T>C	p.Met42Thr	p.M42T	ENST00000361570	NM_058195.3	42	aTg/aCg																																																																															
ABL1	25	MSKCC	GRCh37	9	133760288	133760288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	99	566	0	ENST00000318560.5:c.2611G>A	p.Glu871Lys	p.E871K	ENST00000318560	NM_005157.4	871	Gag/Aag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53225198	53225198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	72	884	1	ENST00000375401.3:c.3020G>A	p.Arg1007His	p.R1007H	ENST00000375401	NM_004187.3	1007	cGt/cAt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53244010	53244010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	169	784	1	ENST00000375401.3:c.983G>A	p.Arg328Gln	p.R328Q	ENST00000375401	NM_004187.3	328	cGg/cAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76937992	76937992	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	50	613	0	ENST00000373344.5:c.2756A>C	p.Asp919Ala	p.D919A	ENST00000373344	NM_000489.3	919	gAt/gCt																																																																															
ATRX	546	MSKCC	GRCh37	X	76938233	76938233	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	150	754	0	ENST00000373344.5:c.2515A>G	p.Lys839Glu	p.K839E	ENST00000373344	NM_000489.3	839	Aaa/Gaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0019429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	70	583	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32945219	32945219	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	47	673	0	ENST00000380152.3:c.8614G>T	p.Glu2872Ter	p.E2872*	ENST00000380152		2872	Gaa/Taa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914039	32914040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	59	639	0	ENST00000380152.3:c.5551dup	p.Ile1851AsnfsTer7	p.I1851Nfs*7	ENST00000380152		1849	-/A																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30108079	30108079	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	55	682	0	ENST00000331968.5:c.728G>T	p.Arg243Leu	p.R243L	ENST00000331968	NM_002742.2	243	cGa/cTa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43771511	43771602	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTAAAAATGTTTTCATCTGGTAAAATGACATTAGTATAACCCTACAGCAAAACTCGTAAATCCTTTTTAGAAAGTTCGGCTTACCTTGCAGG	CTAAAAATGTTTTCATCTGGTAAAATGACATTAGTATAACCCTACAGCAAAACTCGTAAATCCTTTTTAGAAAGTTCGGCTTACCTTGCAGG	TTAATTTTAAAA			P-0019429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	32	586	3	ENST00000382044.4:c.781_788+84delinsTTTTAAAATTAA		p.X261_splice	ENST00000382044	NM_001141980.1	261																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	21	461	0	ENST00000342988.3:c.1487G>C	p.Arg496Pro	p.R496P	ENST00000342988	NM_005359.5	496	cGt/cCt																																																																															
ACVR1	90	MSKCC	GRCh37	2	158634668	158634668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	34	387	0	ENST00000263640.3:c.518C>T	p.Thr173Ile	p.T173I	ENST00000263640	NM_001105.4	173	aCc/aTc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918347	44918348	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0019429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	28	270	0	ENST00000377967.4:c.974+1dup		p.-324fs	ENST00000377967	NM_021140.2	324	-/G																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223529	53223604	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTCGCCCTCGGGCAGCCGCACAGGCAGTCTCTGCAGGGCTACCAGCAGTGCCAGGATGGTCTCCAGGCGCGGGC	GCCTCGCCCTCGGGCAGCCGCACAGGCAGTCTCTGCAGGGCTACCAGCAGTGCCAGGATGGTCTCCAGGCGCGGGC	-			P-0019429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	39	235	0	ENST00000375401.3:c.3755_3830del	p.Arg1252ProfsTer25	p.R1252Pfs*25	ENST00000375401	NM_004187.3	1252	cGCCCGCGCCTGGAGACCATCCTGGCACTGCTGGTAGCCCTGCAGAGACTGCCTGTGCGGCTGCCCGAGGGCGAGGCc/cc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436624	52436624	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	323	856	0	ENST00000460680.1:c.2050C>T	p.Gln684Ter	p.Q684*	ENST00000460680	NM_004656.3	684	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578471	7578471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	423	938	0	ENST00000269305.4:c.459delC	p.Gly154AlafsTer16	p.G154Afs*16	ENST00000269305	NM_001126112.2	153	ccC/cc																																																																															
RB1	5925	MSKCC	GRCh37	13	49027172	49027178	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGACC	AAGGACC	-			P-0019430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	218	776	0	ENST00000267163.4:c.1741_1747del	p.Gly581LeufsTer28	p.G581Lfs*28	ENST00000267163	NM_000321.2	580	gAAGGACCa/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	61	634	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
EZH2	2146	MSKCC	GRCh37	7	148506428	148506428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	77	667	1	ENST00000320356.2:c.2084C>T	p.Ser695Leu	p.S695L	ENST00000320356	NM_004456.4	695	tCg/tTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16203049	16203049	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	69	665	0	ENST00000375759.3:c.757C>T	p.Gln253Ter	p.Q253*	ENST00000375759	NM_015001.2	253	Cag/Tag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11298106	11298106	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	47	529	0	ENST00000361445.4:c.2003-1G>C		p.X668_splice	ENST00000361445	NM_004958.3	668																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120458258	120458258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	49	749	0	ENST00000256646.2:c.7087G>T	p.Gly2363Trp	p.G2363W	ENST00000256646	NM_024408.3	2363	Ggg/Tgg																																																																															
FH	2271	MSKCC	GRCh37	1	241680489	241680489	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	85	560	0	ENST00000366560.3:c.260G>T	p.Arg87Leu	p.R87L	ENST00000366560	NM_000143.3	87	cGc/cTc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097641	8097641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	19	243	0	ENST00000346208.3:c.23C>A	p.Pro8Gln	p.P8Q	ENST00000346208		8	cCg/cAg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18716309	18716309	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	23	429	0	ENST00000266497.5:c.3658-2A>T		p.X1220_splice	ENST00000266497		1220																																																																																
KRAS	3845	MSKCC	GRCh37	12	25380229	25380229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	57	634	0	ENST00000256078.4:c.229G>A	p.Gly77Ser	p.G77S	ENST00000256078	NM_033360.2	77	Ggc/Agc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231176	46231176	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	30	488	0	ENST00000334344.6:c.1096A>T	p.Arg366Trp	p.R366W	ENST00000334344	NM_152641.2	366	Agg/Tgg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244661	46244661	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	152	731	0	ENST00000334344.6:c.2755C>T	p.Gln919Ter	p.Q919*	ENST00000334344	NM_152641.2	919	Cag/Tag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481938	56481938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	89	809	1	ENST00000267101.3:c.866G>A	p.Ser289Asn	p.S289N	ENST00000267101	NM_001982.3	289	aGc/aAc																																																																															
RB1	5925	MSKCC	GRCh37	13	49039365	49039365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	39	969	1	ENST00000267163.4:c.2350C>T	p.His784Tyr	p.H784Y	ENST00000267163	NM_000321.2	784	Cac/Tac																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281476	49281476	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	96	670	1	ENST00000282018.3:c.523G>T	p.Asp175Tyr	p.D175Y	ENST00000282018	NM_020377.2	175	Gac/Tac																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281735	49281735	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	53	959	0	ENST00000282018.3:c.782T>A	p.Leu261Gln	p.L261Q	ENST00000282018	NM_020377.2	261	cTg/cAg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99434677	99434677	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	133	853	1	ENST00000268035.6:c.764A>T	p.Tyr255Phe	p.Y255F	ENST00000268035	NM_000875.3	255	tAc/tTc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134476	2134476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	104	1082	0	ENST00000219476.3:c.4253C>T	p.Ser1418Leu	p.S1418L	ENST00000219476	NM_000548.3	1418	tCa/tTa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892140	9892140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	52	650	0	ENST00000330684.3:c.2350G>T	p.Gly784Cys	p.G784C	ENST00000330684	NM_001134407.1	784	Ggt/Tgt																																																																															
CDH1	999	MSKCC	GRCh37	16	68862127	68862127	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	110	698	0	ENST00000261769.5:c.2215G>C	p.Glu739Gln	p.E739Q	ENST00000261769	NM_004360.3	739	Gag/Cag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992271	72992271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1280	89	1040	3	ENST00000268489.5:c.1774G>T	p.Asp592Tyr	p.D592Y	ENST00000268489	NM_006885.3	592	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	193	898	1	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15938084	15938084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	27	233	0	ENST00000268712.3:c.7130C>T	p.Ser2377Leu	p.S2377L	ENST00000268712	NM_006311.3	2377	tCa/tTa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15964961	15964961	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	38	725	2	ENST00000268712.3:c.5635C>T	p.Gln1879Ter	p.Q1879*	ENST00000268712	NM_006311.3	1879	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117581	70117581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	69	819	1	ENST00000245479.2:c.49G>T	p.Gly17Cys	p.G17C	ENST00000245479	NM_000346.3	17	Ggc/Tgc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602864	10602864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	508	1169	3	ENST00000171111.5:c.714C>A	p.Asn238Lys	p.N238K	ENST00000171111	NM_203500.1	238	aaC/aaA																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276741	15276741	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	77	877	0	ENST00000263388.2:c.5524G>C	p.Ala1842Pro	p.A1842P	ENST00000263388	NM_000435.2	1842	Gct/Cct																																																																															
XPO1	7514	MSKCC	GRCh37	2	61717879	61717879	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	34	841	0	ENST00000401558.2:c.1920G>C	p.Met640Ile	p.M640I	ENST00000401558	NM_003400.3	640	atG/atC																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198288654	198288654	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	49	797	0	ENST00000335508.6:c.73C>G	p.Leu25Val	p.L25V	ENST00000335508	NM_012433.2	25	Ctt/Gtt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251707	212251707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	63	433	0	ENST00000342788.4:c.3352C>T	p.His1118Tyr	p.H1118Y	ENST00000342788	NM_005235.2	1118	Cat/Tat																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743914	40743914	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	107	667	0	ENST00000373198.4:c.3081C>G	p.Tyr1027Ter	p.Y1027*	ENST00000373198	NM_133170.3	1027	taC/taG																																																																															
TP63	8626	MSKCC	GRCh37	3	189608630	189608630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	49	718	0	ENST00000264731.3:c.1705G>A	p.Gly569Arg	p.G569R	ENST00000264731	NM_003722.4	569	Ggg/Agg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807310	1807310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	55	819	2	ENST00000260795.2:c.1559C>T	p.Ser520Leu	p.S520L	ENST00000260795		520	tCg/tTg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750485	41750485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	104	629	1	ENST00000226382.2:c.143G>A	p.Arg48Lys	p.R48K	ENST00000226382	NM_003924.3	48	aGg/aAg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144632	55144632	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	93	618	2	ENST00000257290.5:c.2106G>T	p.Lys702Asn	p.K702N	ENST00000257290	NM_006206.4	702	aaG/aaT																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38972022	38972022	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	24	532	0	ENST00000357387.3:c.929A>T	p.Gln310Leu	p.Q310L	ENST00000357387	NM_152756.3	310	cAg/cTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591054	67591054	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	55	519	0	ENST00000274335.5:c.1647del	p.Lys550ArgfsTer14	p.K550Rfs*14	ENST00000274335		549	ttG/tt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562657	176562657	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	61	780	0	ENST00000439151.2:c.553G>C	p.Glu185Gln	p.E185Q	ENST00000439151	NM_022455.4	185	Gag/Cag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151947968	151947968	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	83	734	0	ENST00000262189.6:c.1705C>T	p.Gln569Ter	p.Q569*	ENST00000262189	NM_170606.2	569	Cag/Tag																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38279365	38279365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	95	1013	1	ENST00000425967.3:c.1124G>T	p.Gly375Val	p.G375V	ENST00000425967	NM_001174067.1	375	gGt/gTt																																																																															
LYN	4067	MSKCC	GRCh37	8	56860200	56860200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	98	730	0	ENST00000519728.1:c.202G>A	p.Val68Met	p.V68M	ENST00000519728	NM_002350.3	68	Gtg/Atg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141568583	141568583	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	111	656	1	ENST00000220592.5:c.878+1G>A		p.X293_splice	ENST00000220592	NM_012154.3	293																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8389308	8389308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	100	830	0	ENST00000356435.5:c.4310G>T	p.Gly1437Val	p.G1437V	ENST00000356435		1437	gGg/gTg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250337	110250337	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	218	958	1	ENST00000374672.4:c.338T>A	p.Leu113Gln	p.L113Q	ENST00000374672	NM_004235.4	113	cTg/cAg																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15822269	15822269	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	46	365	0	ENST00000307771.7:c.348G>C	p.Arg116Ser	p.R116S	ENST00000307771	NM_005089.3	116	agG/agC																																																																															
AR	367	MSKCC	GRCh37	X	66942750	66942750	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	120	449	0	ENST00000374690.3:c.2531C>A	p.Ala844Glu	p.A844E	ENST00000374690	NM_000044.3	844	gCa/gAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	14	598	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	62	598	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0019446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	29	387	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0019446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	51	617	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686374	30686374	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	64	404	2	ENST00000359013.4:c.305G>T	p.Cys102Phe	p.C102F	ENST00000359013	NM_001024847.2	102	tGt/tTt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410082	139410082	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	116	893	0	ENST00000277541.6:c.1756A>G	p.Thr586Ala	p.T586A	ENST00000277541	NM_017617.3	586	Acc/Gcc																																																																															
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	249	397	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	209	733	0	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
TP53BP1	7158	MSKCC	GRCh37	15	43748660	43748661	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	164	1156	1	ENST00000382044.4:c.2145dup	p.Glu716ArgfsTer9	p.E716Rfs*9	ENST00000382044	NM_001141980.1	715	-/A																																																																															
TET1	80312	MSKCC	GRCh37	10	70332102	70332102	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	68	270	0	ENST00000373644.4:c.7C>T	p.Arg3Ter	p.R3*	ENST00000373644	NM_030625.2	3	Cga/Tga																																																																															
CBL	867	MSKCC	GRCh37	11	119146766	119146766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	217	738	2	ENST00000264033.4:c.929C>T	p.Ala310Val	p.A310V	ENST00000264033	NM_005188.3	310	gCt/gTt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806170	1806170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	409	1278	1	ENST00000260795.2:c.1189C>T	p.Arg397Cys	p.R397C	ENST00000260795		397	Cgc/Tgc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244214	153244214	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	191	663	0	ENST00000281708.4:c.1943T>G	p.Leu648Arg	p.L648R	ENST00000281708	NM_033632.3	648	cTa/cGa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153252005	153252005	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0019449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	180	673	1	ENST00000281708.4:c.1001T>A	p.Leu334Ter	p.L334*	ENST00000281708	NM_033632.3	334	tTg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0019450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	102	913	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0019450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	19	816	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0019450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	2344	614	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032057	26032057	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	29	322	0	ENST00000244661.2:c.232G>C	p.Asp78His	p.D78H	ENST00000244661	NM_003537.3	78	Gac/Cac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987257	2987257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	51	587	0	ENST00000396946.4:c.172G>C	p.Asp58His	p.D58H	ENST00000396946	NM_032415.4	58	Gat/Cat																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118705	115118715	+	frameshift_variant	Frame_Shift_Del	DEL	GTTGTTGGTGA	GTTGTTGGTGA	-			P-0019452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	269	805	0	ENST00000257566.3:c.626_636del	p.Leu209HisfsTer14	p.L209Hfs*14	ENST00000257566	NM_016569.3	209	cTCACCAACAAC/c																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267361	198267361	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	352	841	0	ENST00000335508.6:c.1996A>G	p.Lys666Glu	p.K666E	ENST00000335508	NM_012433.2	666	Aag/Gag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	60	817	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0019455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	14	625	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0019455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	17	623	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	426	679	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag																																																																															
MEN1	4221	MSKCC	GRCh37	11	64571850	64571850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	199	980	2	ENST00000337652.1:c.1804G>A	p.Asp602Asn	p.D602N	ENST00000337652	NM_130803.2	602	Gac/Aac																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245322	46245322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	93	543	2	ENST00000334344.6:c.3416G>A	p.Gly1139Glu	p.G1139E	ENST00000334344	NM_152641.2	1139	gGa/gAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420061	49420061	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	60	656	0	ENST00000301067.7:c.15688T>C	p.Cys5230Arg	p.C5230R	ENST00000301067	NM_003482.3	5230	Tgt/Cgt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589396	28589396	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	C			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	201	543	0	ENST00000241453.7:c.2654-3C>G		p.X885_splice	ENST00000241453	NM_004119.2	885																																																																																
MGA	23269	MSKCC	GRCh37	15	42005660	42005660	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	56	404	0	ENST00000219905.7:c.3396G>C	p.Leu1132Phe	p.L1132F	ENST00000219905	NM_001164273.1	1132	ttG/ttC																																																																															
NF1	4763	MSKCC	GRCh37	17	29661909	29661909	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	107	637	0	ENST00000358273.4:c.5866C>G	p.Leu1956Val	p.L1956V	ENST00000358273	NM_001042492.2	1956	Cta/Gta																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243523	41243523	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	155	797	0	ENST00000357654.3:c.4025C>A	p.Ser1342Ter	p.S1342*	ENST00000357654	NM_007294.3	1342	tCa/tAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218419	36218419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	133	722	1	ENST00000222270.7:c.4198C>T	p.Arg1400Cys	p.R1400C	ENST00000222270	NM_014727.1	1400	Cgc/Tgc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906843	50906843	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	89	620	0	ENST00000440232.2:c.1231C>T	p.Gln411Ter	p.Q411*	ENST00000440232	NM_002691.3	411	Cag/Tag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25991682	25991682	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	98	540	0	ENST00000435504.4:c.560C>G	p.Ser187Cys	p.S187C	ENST00000435504		187	tCc/tGc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225422464	225422464	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	188	713	0	ENST00000264414.4:c.176G>C	p.Arg59Thr	p.R59T	ENST00000264414	NM_003590.4	59	aGa/aCa																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62298822	62298822	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	295	793	1	ENST00000508582.2:c.687G>T	p.Arg229Ser	p.R229S	ENST00000508582		229	agG/agT																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62320966	62320966	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	121	701	0	ENST00000508582.2:c.2062G>T	p.Asp688Tyr	p.D688Y	ENST00000508582		688	Gat/Tat																																																																															
EP300	2033	MSKCC	GRCh37	22	41553371	41553371	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	201	725	0	ENST00000263253.7:c.3460G>C	p.Asp1154His	p.D1154H	ENST00000263253	NM_001429.3	1154	Gac/Cac																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52621383	52621383	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	135	712	0	ENST00000394830.3:c.3034G>C	p.Val1012Leu	p.V1012L	ENST00000394830	NM_018313.4	1012	Gtc/Ctc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72866509	72866509	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	58	526	0	ENST00000325599.8:c.754C>G	p.Gln252Glu	p.Q252E	ENST00000325599	NM_018130.2	252	Cag/Gag																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138409969	138409969	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	78	627	0	ENST00000289153.2:c.1909C>G	p.Gln637Glu	p.Q637E	ENST00000289153	NM_006219.2	637	Caa/Gaa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185190777	185190777	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1400	116	611	0	ENST00000265026.3:c.1658G>C	p.Arg553Thr	p.R553T	ENST00000265026	NM_004721.4	553	aGa/aCa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001085	150001085	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	308	637	0	ENST00000253339.5:c.2519G>T	p.Gly840Val	p.G840V	ENST00000253339		840	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	92	480	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0019458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	87	511	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189412	56189412	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	106	598	0	ENST00000399503.3:c.4444C>T	p.Arg1482Ter	p.R1482*	ENST00000399503	NM_005921.1	1482	Cga/Tga																																																																															
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	99	463	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061463	38061463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	90	614	0	ENST00000250448.2:c.526A>G	p.Ile176Val	p.I176V	ENST00000250448	NM_004496.3	176	Atc/Gtc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	161	594	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0019461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	113	762	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225896	2225896	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1424	78	749	0	ENST00000326181.6:c.1688A>G	p.Tyr563Cys	p.Y563C	ENST00000326181	NM_032271.2	563	tAc/tGc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858351	9858351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	118	538	0	ENST00000330684.3:c.3050C>A	p.Ser1017Tyr	p.S1017Y	ENST00000330684	NM_001134407.1	1017	tCc/tAc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78765275	78765276	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTG			P-0019462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	117	595	0	ENST00000306801.3:c.857_858insTGT	p.Val287dup	p.V287dup	ENST00000306801	NM_020761.2	287	ctg/cTTGtg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18280088	18280088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	87	236	0	ENST00000222254.8:c.2171C>T	p.Pro724Leu	p.P724L	ENST00000222254	NM_005027.3	724	cCg/cTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41573003	41573003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	263	1027	1	ENST00000263253.7:c.5288G>A	p.Arg1763Gln	p.R1763Q	ENST00000263253	NM_001429.3	1763	cGg/cAg																																																																															
NPM1	4869	MSKCC	GRCh37	5	170816861	170817121	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTATAGTCTTTTATGGGTGTCTGTAGAGGTTTCTGTTCAAGAAATCTAGGAATTGATCATTCTGCTTTGCCCTCTGGTAGCTAAAATAGTGAAAAACTAGTTCAAAAGTTAGACCTGACCTTTTTGGTTACCCACACTTAAGTTTCAGTGTTATTTTTCTCCTTGTTAGAGTTGCTTTTTTCTTCATTTACAGGTTGTGAACTAAAGGCCGACAAAGATTATCACTTTAAGGTGGATAATGATGAAAATGAGCACCAGTT	ATTATAGTCTTTTATGGGTGTCTGTAGAGGTTTCTGTTCAAGAAATCTAGGAATTGATCATTCTGCTTTGCCCTCTGGTAGCTAAAATAGTGAAAAACTAGTTCAAAAGTTAGACCTGACCTTTTTGGTTACCCACACTTAAGTTTCAGTGTTATTTTTCTCCTTGTTAGAGTTGCTTTTTTCTTCATTTACAGGTTGTGAACTAAAGGCCGACAAAGATTATCACTTTAAGGTGGATAATGATGAAAATGAGCACCAGTT	-			P-0019462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	66	34	0	ENST00000296930.5:c.59-192_127del		p.X20_splice	ENST00000296930	NM_002520.6	20																																																																																
HIST1H3C	8352	MSKCC	GRCh37	6	26045712	26045712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	100	260	0	ENST00000540144.1:c.74C>T	p.Ala25Val	p.A25V	ENST00000540144	NM_003531.2	25	gCa/gTa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412639	139412639	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1037236860		P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	45	874	3	ENST00000277541.6:c.1205C>T	p.Ser402Leu	p.S402L	ENST00000277541	NM_017617.3	402	tCg/tTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711344	114711344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	68	560	0	ENST00000543371.1:c.359C>T	p.Ser120Leu	p.S120L	ENST00000543371	NM_001198531.1	120	tCg/tTg																																																																															
JUN	3725	MSKCC	GRCh37	1	59248297	59248297	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	16	140	0	ENST00000371222.2:c.446C>A	p.Ser149Ter	p.S149*	ENST00000371222	NM_002228.3	149	tCg/tAg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206666608	206666608	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	110	703	0	ENST00000367120.3:c.1942G>C	p.Glu648Gln	p.E648Q	ENST00000367120	NM_014002.3	648	Gag/Cag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	495071	495071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	74	704	1	ENST00000399788.2:c.235G>A	p.Glu79Lys	p.E79K	ENST00000399788	NM_001042603.1	79	Gaa/Aaa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114246	115114247	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCT			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	181	890	0	ENST00000257566.3:c.967_970dup	p.Val324GlufsTer4	p.V324Efs*4	ENST00000257566	NM_016569.3	324	gtg/gAGGGtg																																																																															
CDH1	999	MSKCC	GRCh37	16	68844098	68844099	+	splice_acceptor_variant	Splice_Site	DNP	AG	AG	CC			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	111	610	0	ENST00000261769.5:c.688-2_688-1delinsCC		p.X230_splice	ENST00000261769	NM_004360.3	230																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11114044	11114044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	31	985	0	ENST00000344626.4:c.1972G>A	p.Glu658Lys	p.E658K	ENST00000344626	NM_003072.3	658	Gaa/Aaa																																																																															
AXL	558	MSKCC	GRCh37	19	41748805	41748805	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	103	1067	0	ENST00000301178.4:c.1330C>G	p.Pro444Ala	p.P444A	ENST00000301178	NM_021913.4	444	Cct/Gct																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023157	31023157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	79	922	0	ENST00000375687.4:c.2642G>A	p.Arg881Lys	p.R881K	ENST00000375687	NM_015338.5	881	aGa/aAa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191497	185191497	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	98	935	0	ENST00000265026.3:c.2378C>G	p.Ser793Cys	p.S793C	ENST00000265026	NM_004721.4	793	tCt/tGt																																																																															
KDR	3791	MSKCC	GRCh37	4	55970907	55970907	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	100	848	0	ENST00000263923.4:c.1890G>C	p.Lys630Asn	p.K630N	ENST00000263923	NM_002253.2	630	aaG/aaC																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032057	26032057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	110	499	0	ENST00000244661.2:c.232G>A	p.Asp78Asn	p.D78N	ENST00000244661	NM_003537.3	78	Gac/Aac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962914	2962914	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147823569		P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	152	1070	2	ENST00000396946.4:c.1994C>T	p.Ser665Leu	p.S665L	ENST00000396946	NM_032415.4	665	tCg/tTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984044	2984044	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	46	734	0	ENST00000396946.4:c.486G>C	p.Glu162Asp	p.E162D	ENST00000396946	NM_032415.4	162	gaG/gaC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860485	151860485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	84	840	0	ENST00000262189.6:c.10177G>A	p.Glu3393Lys	p.E3393K	ENST00000262189	NM_170606.2	3393	Gaa/Aaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860512	151860512	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	88	799	0	ENST00000262189.6:c.10150G>T	p.Glu3384Ter	p.E3384*	ENST00000262189	NM_170606.2	3384	Gaa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151946966	151946967	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	57	646	0	ENST00000262189.6:c.1807_1808del	p.Ile603CysfsTer11	p.I603Cfs*11	ENST00000262189	NM_170606.2	603	ATt/t																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342625	87342625	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	89	756	0	ENST00000277120.3:c.910C>G	p.Pro304Ala	p.P304A	ENST00000277120		304	Cca/Gca																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188071	11188071	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	19	440	0	ENST00000361445.4:c.6023A>G	p.Gln2008Arg	p.Q2008R	ENST00000361445	NM_004958.3	2008	cAg/cGg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097622	27097622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	71	757	4	ENST00000324856.7:c.3216del	p.Lys1072AsnfsTer21	p.K1072Nfs*21	ENST00000324856	NM_006015.4	1071	Aaa/aa																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46509485	46509485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	117	564	2	ENST00000262741.5:c.1246G>A	p.Ala416Thr	p.A416T	ENST00000262741	NM_003629.3	416	Gca/Aca																																																																															
JUN	3725	MSKCC	GRCh37	1	59248285	59248285	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	12	93	1	ENST00000371222.2:c.458del	p.Gly153AlafsTer29	p.G153Afs*29	ENST00000371222	NM_002228.3	153	gGc/gc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175973	176175973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	29	277	1	ENST00000367669.3:c.142G>A	p.Val48Met	p.V48M	ENST00000367669	NM_022457.5	48	Gtg/Atg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206669462	206669462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	74	713	2	ENST00000367120.3:c.2135C>T	p.Ala712Val	p.A712V	ENST00000367120	NM_014002.3	712	gCa/gTa																																																																															
RET	5979	MSKCC	GRCh37	10	43615077	43615077	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	49	758	1	ENST00000355710.3:c.2491G>T	p.Gly831Cys	p.G831C	ENST00000355710	NM_020975.4	831	Ggc/Tgc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104353420	104353420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	75	883	1	ENST00000369902.3:c.625C>T	p.His209Tyr	p.H209Y	ENST00000369902	NM_016169.3	209	Cac/Tac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	302	566	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518458	69518458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	149	430	0	ENST00000294312.3:c.187C>T	p.Arg63Cys	p.R63C	ENST00000294312	NM_005117.2	63	Cgt/Tgt																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589692	69589692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	10	184	0	ENST00000168712.1:c.161C>T	p.Ser54Leu	p.S54L	ENST00000168712	NM_002007.2	54	tCg/tTg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633547	69633547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	163	513	4	ENST00000334134.2:c.155C>T	p.Thr52Met	p.T52M	ENST00000334134	NM_005247.2	52	aCg/aTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936141	71936141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	23	376	0	ENST00000298229.2:c.113C>T	p.Ala38Val	p.A38V	ENST00000298229	NM_001567.3	38	gCg/gTg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998220	100998220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	179	594	1	ENST00000325455.5:c.1582G>A	p.Ala528Thr	p.A528T	ENST00000325455	NM_001202474.3	528	Gcc/Acc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998289	100998289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	63	210	2	ENST00000325455.5:c.1513G>A	p.Ala505Thr	p.A505T	ENST00000325455	NM_001202474.3	505	Gcc/Acc																																																																															
ATM	472	MSKCC	GRCh37	11	108216476	108216477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	14	279	0	ENST00000278616.4:c.8432dupA	p.Ser2812ValfsTer3	p.S2812Vfs*3	ENST00000278616	NM_000051.3	2809	caa/cAaa																																																																															
ATM	472	MSKCC	GRCh37	11	108216609	108216609	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141534716		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	20	365	0	ENST00000278616.4:c.8558C>T	p.Thr2853Met	p.T2853M	ENST00000278616	NM_000051.3	2853	aCg/aTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343356	118343356	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	103	387	0	ENST00000534358.1:c.1482G>T	p.Glu494Asp	p.E494D	ENST00000534358	NM_005933.3	494	gaG/gaT																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344146	118344146	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	190	607	0	ENST00000534358.1:c.2272A>G	p.Arg758Gly	p.R758G	ENST00000534358	NM_005933.3	758	Aga/Gga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	49	678	4	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376016	118376016	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	43	591	0	ENST00000534358.1:c.9409G>T	p.Gly3137Ter	p.G3137*	ENST00000534358	NM_005933.3	3137	Gga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118390420	118390420	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	79	724	0	ENST00000534358.1:c.11234A>G	p.Asn3745Ser	p.N3745S	ENST00000534358	NM_005933.3	3745	aAt/aGt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416219	416219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	183	609	2	ENST00000399788.2:c.3967C>T	p.Arg1323Trp	p.R1323W	ENST00000399788	NM_001042603.1	1323	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435198	49435198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	26	506	4	ENST00000301067.7:c.6355G>A	p.Ala2119Thr	p.A2119T	ENST00000301067	NM_003482.3	2119	Gct/Act																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445614	49445614	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	383	1178	0	ENST00000301067.7:c.1852del	p.Ser618ProfsTer312	p.S618Pfs*312	ENST00000301067	NM_003482.3	618	Tcc/cc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56480424	56480424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	47	712	0	ENST00000267101.3:c.531G>T	p.Lys177Asn	p.K177N	ENST00000267101	NM_001982.3	177	aaG/aaT																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495715	56495715	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	71	560	0	ENST00000267101.3:c.3910delC	p.His1304MetfsTer7	p.H1304Mfs*7	ENST00000267101	NM_001982.3	1302	gCc/gc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112190	115112190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	246	635	0	ENST00000257566.3:c.1550C>T	p.Pro517Leu	p.P517L	ENST00000257566	NM_016569.3	517	cCg/cTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112505	115112505	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	60	856	0	ENST00000257566.3:c.1235T>C	p.Val412Ala	p.V412A	ENST00000257566	NM_016569.3	412	gTc/gCc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120797	115120797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	55	527	0	ENST00000257566.3:c.209G>A	p.Gly70Glu	p.G70E	ENST00000257566	NM_016569.3	70	gGg/gAg																																																																															
POLE	5426	MSKCC	GRCh37	12	133219487	133219487	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	147	868	4	ENST00000320574.5:c.4647del	p.Lys1550AsnfsTer12	p.K1550Nfs*12	ENST00000320574	NM_006231.2	1549	ccC/cc																																																																															
POLE	5426	MSKCC	GRCh37	12	133245441	133245441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	64	762	0	ENST00000320574.5:c.1879G>A	p.Val627Met	p.V627M	ENST00000320574	NM_006231.2	627	Gtg/Atg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	54	804	2	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240333	41240333	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	108	532	0	ENST00000379561.5:c.17A>G	p.Gln6Arg	p.Q6R	ENST00000379561	NM_002015.3	6	cAg/cGg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438211	110438211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	16	230	1	ENST00000375856.3:c.190G>A	p.Gly64Arg	p.G64R	ENST00000375856	NM_003749.2	64	Ggg/Agg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988327	36988327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	60	627	1	ENST00000354822.5:c.326C>T	p.Ser109Leu	p.S109L	ENST00000354822	NM_001079668.2	109	tCg/tTg																																																																															
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	57	547	2	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40679406	40679406	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	88	693	1	ENST00000249776.8:c.484G>A	p.Gly162Ser	p.G162S	ENST00000249776	NM_033286.3	162	Ggc/Agc																																																																															
MGA	23269	MSKCC	GRCh37	15	42041422	42041424	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	174	666	0	ENST00000219905.7:c.5622_5624del	p.Ser1875del	p.S1875del	ENST00000219905	NM_001164273.1	1873	TCT/-																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	63	674	4	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134575	2134575	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142848358		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	40	816	3	ENST00000219476.3:c.4352G>A	p.Arg1451His	p.R1451H	ENST00000219476	NM_000548.3	1451	cGc/cAc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225955	2225955	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	31	665	2	ENST00000326181.6:c.1746+1G>A		p.X582_splice	ENST00000326181	NM_032271.2	582																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9858517	9858517	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765370528		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	49	623	0	ENST00000330684.3:c.2884G>A	p.Glu962Lys	p.E962K	ENST00000330684	NM_001134407.1	962	Gaa/Aaa																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30133281	30133283	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	207	748	0	ENST00000263025.4:c.215_217del	p.Lys72del	p.K72del	ENST00000263025	NM_002746.2	72	aAGAtc/atc																																																																															
CBFB	865	MSKCC	GRCh37	16	67116167	67116167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	176	634	0	ENST00000412916.2:c.451C>T	p.Arg151Cys	p.R151C	ENST00000412916		151	Cgc/Tgc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	34	598	1	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953228	81953228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	90	348	0	ENST00000359376.3:c.2194C>T	p.Arg732Cys	p.R732C	ENST00000359376	NM_002661.3	732	Cgc/Tgc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836659	89836659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	232	889	0	ENST00000389301.3:c.2231C>T	p.Pro744Leu	p.P744L	ENST00000389301	NM_000135.2	744	cCc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574030	7574030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	46	646	0	ENST00000269305.4:c.997C>T	p.Arg333Cys	p.R333C	ENST00000269305	NM_001126112.2	333	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	72	828	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	79	734	1	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032541	12032541	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267604739		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	159	539	0	ENST00000353533.5:c.977C>T	p.Pro326Leu	p.P326L	ENST00000353533	NM_003010.3	326	cCg/cTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15942857	15942857	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	33	664	1	ENST00000268712.3:c.6845A>G	p.His2282Arg	p.H2282R	ENST00000268712	NM_006311.3	2282	cAt/cGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29486049	29486050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	112	575	0	ENST00000358273.4:c.233dup	p.Asn78LysfsTer29	p.N78Kfs*29	ENST00000358273	NM_001042492.2	76	gaa/gAaa																																																																															
NF1	4763	MSKCC	GRCh37	17	29579995	29579996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	33	619	0	ENST00000358273.4:c.4157dupA	p.Glu1387GlyfsTer8	p.E1387Gfs*8	ENST00000358273	NM_001042492.2	1384	gaa/gAaa																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30325864	30325864	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	33	666	0	ENST00000322652.5:c.2062T>A	p.Leu688Ile	p.L688I	ENST00000322652	NM_015355.2	688	Tta/Ata																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	259	658	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	141	710	3	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78829286	78829286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	62	665	0	ENST00000306801.3:c.1337G>A	p.Arg446Gln	p.R446Q	ENST00000306801	NM_020761.2	446	cGg/cAg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619799	1619799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	50	862	1	ENST00000344749.5:c.1147G>A	p.Asp383Asn	p.D383N	ENST00000344749	NM_001136139.2	383	Gac/Aac																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2229782	2229782	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	141	754	0	ENST00000398665.3:c.4607-2A>G		p.X1536_splice	ENST00000398665	NM_032482.2	1536																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5210512	5210512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	63	686	0	ENST00000357368.4:c.5455A>G	p.Ile1819Val	p.I1819V	ENST00000357368	NM_002850.3	1819	Atc/Gtc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229545	5229545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	91	251	0	ENST00000357368.4:c.2306G>A	p.Arg769His	p.R769H	ENST00000357368	NM_002850.3	769	cGc/cAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272201	15272201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	51	614	2	ENST00000263388.2:c.6238C>T	p.Arg2080Trp	p.R2080W	ENST00000263388	NM_000435.2	2080	Cgg/Tgg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353974	15353974	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	51	235	0	ENST00000263377.2:c.2906A>T	p.Gln969Leu	p.Q969L	ENST00000263377	NM_058243.2	969	cAg/cTg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379880	17379880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	58	1080	0	ENST00000359435.4:c.265G>A	p.Val89Ile	p.V89I	ENST00000359435	NM_001033549.1	89	Gtc/Atc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955187	17955187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	112	908	0	ENST00000458235.1:c.40C>T	p.Arg14Cys	p.R14C	ENST00000458235	NM_000215.3	14	Cgt/Tgt																																																																															
UPF1	5976	MSKCC	GRCh37	19	18966829	18966829	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	265	851	0	ENST00000262803.5:c.1640A>G	p.Lys547Arg	p.K547R	ENST00000262803	NM_002911.3	547	aAg/aGg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212225	36212225	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	395	799	0	ENST00000222270.7:c.1976T>C	p.Leu659Pro	p.L659P	ENST00000222270	NM_014727.1	659	cTg/cCg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919935	50919935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	139	795	0	ENST00000440232.2:c.3022C>T	p.Arg1008Cys	p.R1008C	ENST00000440232	NM_002691.3	1008	Cgc/Tgc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25458619	25458619	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	162	605	0	ENST00000264709.3:c.2554A>G	p.Met852Val	p.M852V	ENST00000264709	NM_175629.2	852	Atg/Gtg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467482	25467484	+	inframe_deletion	In_Frame_Del	DEL	CGT	CGT	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	70	684	2	ENST00000264709.3:c.1592_1594del	p.Asp531del	p.D531del	ENST00000264709	NM_175629.2	531	gACGgc/ggc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607815	46607816	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	80	918	0	ENST00000263734.3:c.2009dup	p.Val671CysfsTer45	p.V671Cfs*45	ENST00000263734	NM_001430.4	668	-/C																																																																															
REL	5966	MSKCC	GRCh37	2	61147565	61147565	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	13	45	0	ENST00000295025.8:c.970A>G	p.Thr324Ala	p.T324A	ENST00000295025	NM_002908.2	324	Aca/Gca																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660251	227660252	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	167	618	2	ENST00000305123.5:c.3203dup	p.Met1069HisfsTer12	p.M1069Hfs*12	ENST00000305123	NM_005544.2	1068	ggc/ggGc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	71	882	4	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	55	195	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
SRC	6714	MSKCC	GRCh37	20	36012647	36012647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	172	319	0	ENST00000358208.4:c.91G>A	p.Ala31Thr	p.A31T	ENST00000358208		31	Gct/Act																																																																															
TOP1	7150	MSKCC	GRCh37	20	39728761	39728762	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	267	635	0	ENST00000361337.2:c.1045_1046del	p.Arg349AspfsTer3	p.R349Dfs*3	ENST00000361337	NM_003286.2	347	aaAGag/aaag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57478633	57478633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	58	656	1	ENST00000371085.3:c.305C>T	p.Ala102Val	p.A102V	ENST00000371085	NM_000516.4	102	gCg/gTg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	53	493	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
EP300	2033	MSKCC	GRCh37	22	41564828	41564828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	74	770	1	ENST00000263253.7:c.4129C>T	p.His1377Tyr	p.H1377Y	ENST00000263253	NM_001429.3	1377	Cat/Tat																																																																															
RAF1	5894	MSKCC	GRCh37	3	12632347	12632347	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	53	667	0	ENST00000251849.4:c.1320del	p.Gln441ArgfsTer5	p.Q441Rfs*5	ENST00000251849	NM_002880.3	440	ttT/tt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934243	49934243	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1407832113		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	185	798	2	ENST00000296474.3:c.2264del	p.Gly755ValfsTer19	p.G755Vfs*19	ENST00000296474	NM_002447.2	755	gGt/gt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52438516	52438518	+	missense_variant	Missense_Mutation	ONP	ATA	ATA	CTC			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	155	833	0	ENST00000460680.1:c.1201_1203delinsGAG	p.Tyr401Glu	p.Y401E	ENST00000460680	NM_004656.3	401	TAT/GAG																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134872997	134872997	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	86	562	0	ENST00000398015.3:c.1301C>A	p.Pro434His	p.P434H	ENST00000398015	NM_004441.4	434	cCc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	14	473	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	28	540	1	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																															
BCL6	604	MSKCC	GRCh37	3	187447436	187447436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	148	652	0	ENST00000232014.4:c.757G>A	p.Val253Met	p.V253M	ENST00000232014	NM_001130845.1	253	Gtg/Atg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801053	1801053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	95	987	2	ENST00000260795.2:c.182G>A	p.Cys61Tyr	p.C61Y	ENST00000260795		61	tGt/tAt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280032	66280032	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	20	364	0	ENST00000273854.3:c.1657C>T	p.Arg553Ter	p.R553*	ENST00000273854	NM_004439.5	553	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532624	187532624	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200112487		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	150	545	0	ENST00000441802.2:c.9769C>T	p.Arg3257Trp	p.R3257W	ENST00000441802	NM_005245.3	3257	Cgg/Tgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628340	187628340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	112	667	1	ENST00000441802.2:c.2642G>A	p.Arg881His	p.R881H	ENST00000441802	NM_005245.3	881	cGc/cAc																																																																															
TERT	7015	MSKCC	GRCh37	5	1293871	1293871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	227	1069	1	ENST00000310581.5:c.1130G>A	p.Arg377His	p.R377H	ENST00000310581	NM_198253.2	377	cGc/cAc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31409418	31409418	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	64	693	0	ENST00000344624.3:c.3689T>C	p.Ile1230Thr	p.I1230T	ENST00000344624		1230	aTt/aCt																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876095	35876095	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	130	431	0	ENST00000303115.3:c.887T>C	p.Val296Ala	p.V296A	ENST00000303115	NM_002185.3	296	gTg/gCg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	306	937	10	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176673711	176673711	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	97	623	0	ENST00000439151.2:c.4411C>T	p.Arg1471Ter	p.R1471*	ENST00000439151	NM_022455.4	1471	Cga/Tga																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056541	26056541	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	66	280	0	ENST00000343677.2:c.116del	p.Pro39ArgfsTer24	p.P39Rfs*24	ENST00000343677	NM_005319.3	39	cCg/cg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324567	31324567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	53	591	0	ENST00000412585.2:c.241C>T	p.Pro81Ser	p.P81S	ENST00000412585	NM_005514.6	81	Ccg/Tcg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163846	32163846	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	144	538	1	ENST00000375023.3:c.5380G>T	p.Glu1794Ter	p.E1794*	ENST00000375023	NM_004557.3	1794	Gag/Tag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93964420	93964420	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	35	690	0	ENST00000369303.4:c.2477T>C	p.Met826Thr	p.M826T	ENST00000369303	NM_004440.3	826	aTg/aCg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265394	152265394	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	113	560	4	ENST00000206249.3:c.847G>T	p.Ala283Ser	p.A283S	ENST00000206249	NM_000125.3	283	Gct/Tct																																																																															
ETV1	2115	MSKCC	GRCh37	7	13940395	13940395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	163	560	0	ENST00000405192.2:c.1111C>T	p.Arg371Cys	p.R371C	ENST00000405192	NM_001163147.1	371	Cgc/Tgc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729844	41729844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	90	362	0	ENST00000242208.4:c.685C>T	p.Arg229Trp	p.R229W	ENST00000242208	NM_002192.2	229	Cgg/Tgg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509806	106509806	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	54	780	1	ENST00000359195.3:c.1800G>T	p.Gln600His	p.Q600H	ENST00000359195	NM_002649.2	600	caG/caT																																																																															
MET	4233	MSKCC	GRCh37	7	116339370	116339370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	26	478	0	ENST00000397752.3:c.232C>A	p.Leu78Ile	p.L78I	ENST00000397752	NM_000245.2	78	Ctt/Att																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	193	614	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RHEB	6009	MSKCC	GRCh37	7	151216593	151216593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	76	206	1	ENST00000262187.5:c.5C>T	p.Pro2Leu	p.P2L	ENST00000262187	NM_005614.3	2	cCg/cTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151866289	151866289	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	90	709	0	ENST00000262189.6:c.9499T>G	p.Phe3167Val	p.F3167V	ENST00000262189	NM_170606.2	3167	Ttt/Gtt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	370	630	24	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38173513	38173513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	92	610	2	ENST00000317025.8:c.1903C>T	p.Arg635Cys	p.R635C	ENST00000317025	NM_023034.1	635	Cgc/Tgc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371995	55371995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	38	673	2	ENST00000297316.4:c.685G>A	p.Gly229Ser	p.G229S	ENST00000297316	NM_022454.3	229	Ggc/Agc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340351	8340351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	31	461	0	ENST00000356435.5:c.5245del	p.Met1749TrpfsTer23	p.M1749Wfs*23	ENST00000356435		1749	Atg/tg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499763	8499763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	151	655	3	ENST00000356435.5:c.2206G>A	p.Val736Met	p.V736M	ENST00000356435		736	Gtg/Atg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	208	536	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
ABL1	25	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	272	941	0	ENST00000318560.5:c.2352delC	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137293628	137293628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	196	962	0	ENST00000481739.1:c.179G>A	p.Gly60Asp	p.G60D	ENST00000481739	NM_002957.4	60	gGc/gAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028845	47028845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	42	800	2	ENST00000329236.7:c.149G>A	p.Ser50Asn	p.S50N	ENST00000329236	NM_001204466.1	50	aGc/aAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040987	47040987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	162	753	1	ENST00000329236.7:c.1283G>A	p.Gly428Asp	p.G428D	ENST00000329236	NM_001204466.1	428	gGc/gAc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	119	680	2	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650481	48650481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	249	1030	0	ENST00000376670.3:c.451G>A	p.Ala151Thr	p.A151T	ENST00000376670	NM_002049.3	151	Gca/Aca																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	218	889	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																															
MED12	9968	MSKCC	GRCh37	X	70344155	70344155	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	149	652	3	ENST00000374080.3:c.1894del	p.Arg632GlyfsTer79	p.R632Gfs*79	ENST00000374080		631	Ccc/cc																																																																															
MED12	9968	MSKCC	GRCh37	X	70357196	70357196	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200663107		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	41	682	1	ENST00000374080.3:c.5711C>T	p.Ala1904Val	p.A1904V	ENST00000374080		1904	gCg/gTg																																																																															
BTK	695	MSKCC	GRCh37	X	100608214	100608214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	169	674	0	ENST00000308731.7:c.1876G>T	p.Val626Leu	p.V626L	ENST00000308731	NM_000061.2	626	Gta/Tta																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52676062	52676062	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	132	348	1	ENST00000394830.3:c.996-1G>C		p.X332_splice	ENST00000394830	NM_018313.4	332																																																																																
IKBKE	9641	MSKCC	GRCh37	1	206651537	206651537	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	134	678	1	ENST00000367120.3:c.847A>T	p.Asn283Tyr	p.N283Y	ENST00000367120	NM_014002.3	283	Aac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	76	864	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0019467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	119	1157	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	165	1079	2	ENST00000326873.7:c.709G>T	p.Asp237Tyr	p.D237Y	ENST00000326873	NM_000455.4	237	Gac/Tac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11113723	11113723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	150	969	0	ENST00000344626.4:c.1831C>T	p.Gln611Ter	p.Q611*	ENST00000344626	NM_003072.3	611	Cag/Tag																																																																															
PREX2	80243	MSKCC	GRCh37	8	68950446	68950446	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	61	796	0	ENST00000288368.4:c.758T>A	p.Leu253Gln	p.L253Q	ENST00000288368	NM_024870.2	253	cTg/cAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412571	63412571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	79	435	0	ENST00000330258.3:c.596G>T	p.Arg199Met	p.R199M	ENST00000330258	NM_152424.3	199	aGg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	49	769	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108218020	108218020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	66	523	0	ENST00000278616.4:c.8599G>A	p.Gly2867Arg	p.G2867R	ENST00000278616	NM_000051.3	2867	Gga/Aga																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813301	102813301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	36	590	1	ENST00000307046.8:c.388C>A	p.Pro130Thr	p.P130T	ENST00000307046	NM_001111285.1	130	Ccc/Acc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992287	72992287	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	70	1152	1	ENST00000268489.5:c.1758G>T	p.Arg586Ser	p.R586S	ENST00000268489	NM_006885.3	586	agG/agT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790122	40790122	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	37	740	0	ENST00000373198.4:c.2609G>T	p.Arg870Leu	p.R870L	ENST00000373198	NM_133170.3	870	cGc/cTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356258	66356258	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	47	755	0	ENST00000273854.3:c.1239G>C	p.Arg413Ser	p.R413S	ENST00000273854	NM_004439.5	413	agG/agC																																																																															
TP53	7157	MSKCC	GRCh37	17	7579323	7579324	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	80	813	0	ENST00000269305.4:c.363dup	p.Val122CysfsTer27	p.V122Cfs*27	ENST00000269305	NM_001126112.2	121	-/T																																																																															
MTOR	2475	MSKCC	GRCh37	1	11199471	11199471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	59	723	0	ENST00000361445.4:c.5020G>T	p.Val1674Leu	p.V1674L	ENST00000361445	NM_004958.3	1674	Gtg/Ttg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822201	72822201	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	45	843	0	ENST00000268489.5:c.9974G>T	p.Gly3325Val	p.G3325V	ENST00000268489	NM_006885.3	3325	gGc/gTc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59870975	59870975	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	89	656	0	ENST00000259008.2:c.1456A>G	p.Thr486Ala	p.T486A	ENST00000259008	NM_032043.2	486	Act/Gct																																																																															
CALR	811	MSKCC	GRCh37	19	13051166	13051166	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	72	756	0	ENST00000316448.5:c.602A>C	p.Asp201Ala	p.D201A	ENST00000316448	NM_004343.3	201	gAc/gCc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296409	15296409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	50	1237	0	ENST00000263388.2:c.2033G>T	p.Gly678Val	p.G678V	ENST00000263388	NM_000435.2	678	gGc/gTc																																																																															
CD79A	973	MSKCC	GRCh37	19	42383136	42383136	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	54	871	0	ENST00000221972.3:c.156C>A	p.Phe52Leu	p.F52L	ENST00000221972	NM_021601.3	52	ttC/ttA																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961465	54961465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	46	399	0	ENST00000312783.6:c.167G>T	p.Arg56Leu	p.R56L	ENST00000312783	NM_198436.1	56	cGc/cTc																																																																															
PARK2	5071	MSKCC	GRCh37	6	163148696	163148696	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	60	684	0	ENST00000366898.1:c.5T>G	p.Ile2Arg	p.I2R	ENST00000366898	NM_004562.2	2	aTa/aGa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962906	2962906	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	81	1002	4	ENST00000396946.4:c.2002C>A	p.His668Asn	p.H668N	ENST00000396946	NM_032415.4	668	Cac/Aac																																																																															
HGF	3082	MSKCC	GRCh37	7	81372755	81372755	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	58	633	0	ENST00000222390.5:c.779G>T	p.Cys260Phe	p.C260F	ENST00000222390	NM_000601.4	260	tGc/tTc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513284	106513284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	28	432	0	ENST00000359195.3:c.2188C>T	p.His730Tyr	p.H730Y	ENST00000359195	NM_002649.2	730	Cac/Tac																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317454	1317454	+	downstream_gene_variant	3'Flank	SNP	G	G	C			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	26	887	0				ENST00000381566																																																																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	131	692	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0019474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	195	1150	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242444	55242445	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAAATTCCCGTCGCTATC			P-0019474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	591	683	0	ENST00000275493.2:c.2217_2234dup	p.Ile740_Lys745dup	p.I740_K745dup	ENST00000275493	NM_005228.3	740	-/AAAATTCCCGTCGCTATC																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30093455	30093455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	47	490	0	ENST00000331968.5:c.1808G>A	p.Arg603His	p.R603H	ENST00000331968	NM_002742.2	603	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092809	27092809	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	68	749	0	ENST00000324856.7:c.2830C>G	p.Gln944Glu	p.Q944E	ENST00000324856	NM_006015.4	944	Cag/Gag																																																																															
BLM	641	MSKCC	GRCh37	15	91328192	91328192	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	110	541	0	ENST00000355112.3:c.2704G>C	p.Asp902His	p.D902H	ENST00000355112	NM_000057.2	902	Gac/Cac																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	244	448	0	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	209	954	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16024505	16024505	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	164	699	2	ENST00000268712.3:c.1713delG	p.Arg572GlufsTer18	p.R572Efs*18	ENST00000268712	NM_006311.3	571	ggG/gg																																																																															
BLM	641	MSKCC	GRCh37	15	91306241	91306241	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs12720097		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	171	803	0	ENST00000355112.3:c.1928G>A	p.Arg643His	p.R643H	ENST00000355112	NM_000057.2	643	cGt/cAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	388	863	9	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	138	485	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368208	45368208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	108	526	1	ENST00000262160.6:c.1394G>A	p.Ser465Asn	p.S465N	ENST00000262160	NM_005901.5	465	aGc/aAc																																																																															
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	75	325	1	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180367	32180367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	228	980	2	ENST00000375023.3:c.2564G>A	p.Arg855His	p.R855H	ENST00000375023	NM_004557.3	855	cGc/cAc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1151	245	1336	14	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
APC	324	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	143	598	0	ENST00000257430.4:c.4364delA	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	362	720	14	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127447	55127447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	281	974	0	ENST00000257290.5:c.235G>A	p.Gly79Ser	p.G79S	ENST00000257290	NM_006206.4	79	Ggc/Agc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821596	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs767179754		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	11	158	2	ENST00000268489.5:c.10579_10581del	p.Gly3527del	p.G3527del	ENST00000268489	NM_006885.3	3527	GGC/-																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14629033	14629035	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	210	817	0	ENST00000254322.2:c.127_129del	p.Glu43del	p.E43del	ENST00000254322	NM_006145.1	43	GAG/-																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213912	66213912	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	126	600	1	ENST00000273854.3:c.2518del	p.Ile840PhefsTer11	p.I840Ffs*11	ENST00000273854	NM_004439.5	840	Att/tt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	204	951	4	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	387	668	7	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
REL	5966	MSKCC	GRCh37	2	61149655	61149656	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	41	232	0	ENST00000295025.8:c.1851dup	p.Gln618SerfsTer8	p.Q618Sfs*8	ENST00000295025	NM_002908.2	615	-/T																																																																															
MSH2	4436	MSKCC	GRCh37	2	47639588	47639588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	95	710	0	ENST00000233146.2:c.687del	p.Ala230LeufsTer16	p.A230Lfs*16	ENST00000233146	NM_000251.2	227	agA/ag																																																																															
SYK	6850	MSKCC	GRCh37	9	93606273	93606273	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	251	1013	6	ENST00000375746.1:c.98delG	p.Gly33AlafsTer2	p.G33Afs*2	ENST00000375746	NM_001174167.1	31	caG/ca																																																																															
MGA	23269	MSKCC	GRCh37	15	42042300	42042301	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	53	879	0	ENST00000219905.7:c.6499_6500del	p.Leu2167GlyfsTer27	p.L2167Gfs*27	ENST00000219905	NM_001164273.1	2165	gaCTct/gact																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101117	27101117	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	260	1081	1	ENST00000324856.7:c.4403del	p.Pro1468LeufsTer13	p.P1468Lfs*13	ENST00000324856	NM_006015.4	1467	Ccc/cc																																																																															
EP300	2033	MSKCC	GRCh37	22	41574679	41574679	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	615	1149	2	ENST00000263253.7:c.6970delC	p.His2324ThrfsTer29	p.H2324Tfs*29	ENST00000263253	NM_001429.3	2322	Ccc/cc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152201885	152201885	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778449608		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	161	686	1	ENST00000206249.3:c.739G>A	p.Glu247Lys	p.E247K	ENST00000206249	NM_000125.3	247	Gaa/Aaa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870961	12870962	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	139	550	0	ENST00000228872.4:c.192dup	p.Gln65SerfsTer60	p.Q65Sfs*60	ENST00000228872	NM_004064.3	63	gat/gaTt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563349	21563349	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	750	1471	1	ENST00000382592.4:c.570del	p.Tyr191ThrfsTer49	p.Y191Tfs*49	ENST00000382592	NM_014572.2	190	ccC/cc																																																																															
TET2	54790	MSKCC	GRCh37	4	106190900	106190900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	105	436	0	ENST00000380013.4:c.4178C>T	p.Thr1393Ile	p.T1393I	ENST00000380013	NM_001127208.2	1393	aCa/aTa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533942	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	128	561	0	ENST00000307078.5:c.1212_1215del	p.Glu405AlafsTer52	p.E405Afs*52	ENST00000307078	NM_004655.3	404	agAGAG/ag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212230	5212230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367918810		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	188	767	0	ENST00000357368.4:c.4801G>A	p.Val1601Ile	p.V1601I	ENST00000357368	NM_002850.3	1601	Gtc/Atc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070324	37070324	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63749795		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	161	685	2	ENST00000231790.2:c.1459C>T	p.Arg487Ter	p.R487*	ENST00000231790	NM_000249.3	487	Cga/Tga																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413710	138413710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	186	730	9	ENST00000289153.2:c.1810delC	p.Arg604GlyfsTer4	p.R604Gfs*4	ENST00000289153	NM_006219.2	604	Cgg/gg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186507012	186507012	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	116	385	0	ENST00000323963.5:c.1178A>G	p.Asn393Ser	p.N393S	ENST00000323963		393	aAt/aGt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	436	1056	11	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	217	897	11	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46609673	46609673	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	546	1223	3	ENST00000263734.3:c.2402delC	p.Pro801HisfsTer39	p.P801Hfs*39	ENST00000263734	NM_001430.4	799	ttC/tt																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458270	12458270	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	204	856	0	ENST00000287820.6:c.892del	p.Leu298CysfsTer38	p.L298Cfs*38	ENST00000287820	NM_015869.4	296	aCc/ac																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825539	50825539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762650238		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	148	792	2	ENST00000398568.2:c.2170G>A	p.Val724Ile	p.V724I	ENST00000398568	NM_001042412.1	724	Gtt/Att																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007331	143007332	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	150	586	1	ENST00000262992.4:c.2452dupA	p.Arg818LysfsTer26	p.R818Kfs*26	ENST00000262992	NM_001101669.1	818	aga/aAga																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526755	31526755	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	231	972	0	ENST00000344624.3:c.285del	p.Cys96AlafsTer12	p.C96Afs*12	ENST00000344624		95	ccC/cc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782409	9782409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	297	1172	1	ENST00000377346.4:c.2342G>A	p.Gly781Glu	p.G781E	ENST00000377346	NM_005026.3	781	gGg/gAg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11169741	11169741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	224	819	0	ENST00000361445.4:c.7412C>T	p.Thr2471Met	p.T2471M	ENST00000361445	NM_004958.3	2471	aCg/aTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11297986	11297986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	277	977	2	ENST00000361445.4:c.2122C>T	p.Arg708Trp	p.R708W	ENST00000361445	NM_004958.3	708	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258750	16258750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	205	856	0	ENST00000375759.3:c.6015G>T	p.Lys2005Asn	p.K2005N	ENST00000375759	NM_015001.2	2005	aaG/aaT																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933744	36933744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	332	1200	0	ENST00000361632.4:c.1655C>T	p.Pro552Leu	p.P552L	ENST00000361632		552	cCt/cTt																																																																															
PARP1	142	MSKCC	GRCh37	1	226568823	226568823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1115	76	1100	1	ENST00000366794.5:c.1246G>A	p.Gly416Arg	p.G416R	ENST00000366794	NM_001618.3	416	Ggg/Agg																																																																															
RET	5979	MSKCC	GRCh37	10	43596095	43596095	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs141679950		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	209	983	0	ENST00000355710.3:c.262A>G	p.Ile88Val	p.I88V	ENST00000355710	NM_020975.4	88	Atc/Gtc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852117	63852118	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	173	846	0	ENST00000279873.7:c.2901dup	p.Tyr968IlefsTer3	p.Y968Ifs*3	ENST00000279873	NM_032199.2	965	-/A																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123276974	123276974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	122	452	0	ENST00000358487.5:c.943G>A	p.Ala315Thr	p.A315T	ENST00000358487	NM_000141.4	315	Gcc/Acc																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154792	2154792	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	191	1400	0	ENST00000434045.2:c.429delC	p.Ala144ProfsTer71	p.A144Pfs*71	ENST00000434045	NM_001127598.1	143	ccC/cc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64132906	64132907	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	262	947	0	ENST00000334205.4:c.1046dup	p.Pro350ThrfsTer20	p.P350Tfs*20	ENST00000334205	NM_003942.2	347	agc/agCc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118377024	118377024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	151	644	0	ENST00000534358.1:c.10417C>T	p.Arg3473Cys	p.R3473C	ENST00000534358	NM_005933.3	3473	Cgt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436042	49436042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	43	678	0	ENST00000301067.7:c.5939C>T	p.Thr1980Met	p.T1980M	ENST00000301067	NM_003482.3	1980	aCg/aTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858581	57858581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	267	1001	1	ENST00000228682.2:c.319G>A	p.Val107Ile	p.V107I	ENST00000228682	NM_005269.2	107	Gta/Ata																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856545	111856545	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1157707616		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	91	452	0	ENST00000341259.2:c.596C>T	p.Ala199Val	p.A199V	ENST00000341259	NM_005475.2	199	gCg/gTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133225594	133225594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	251	946	2	ENST00000320574.5:c.4070G>A	p.Cys1357Tyr	p.C1357Y	ENST00000320574	NM_006231.2	1357	tGc/tAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953905	32953905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	101	625	0	ENST00000380152.3:c.8972G>A	p.Arg2991His	p.R2991H	ENST00000380152		2991	cGt/cAt																																																																															
RB1	5925	MSKCC	GRCh37	13	48937023	48937023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	70	726	0	ENST00000267163.4:c.791C>T	p.Ala264Val	p.A264V	ENST00000267163	NM_000321.2	264	gCa/gTa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73335526	73335526	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	53	559	0	ENST00000377767.4:c.2645A>C	p.Asn882Thr	p.N882T	ENST00000377767	NM_014953.3	882	aAc/aCc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95590812	95590812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	125	584	0	ENST00000343455.3:c.1097C>T	p.Ala366Val	p.A366V	ENST00000343455	NM_177438.2	366	gCc/gTc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95593021	95593021	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	209	915	0	ENST00000343455.3:c.799T>C	p.Tyr267His	p.Y267H	ENST00000343455	NM_177438.2	267	Tat/Cat																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43772200	43772200	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	239	968	0	ENST00000382044.4:c.515A>G	p.Gln172Arg	p.Q172R	ENST00000382044	NM_001141980.1	172	cAg/cGg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457615	67457615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	223	909	0	ENST00000327367.4:c.425G>A	p.Arg142His	p.R142H	ENST00000327367	NM_005902.3	142	cGc/cAc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99250823	99250823	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	209	649	0	ENST00000268035.6:c.127T>C	p.Tyr43His	p.Y43H	ENST00000268035	NM_000875.3	43	Tat/Cat																																																																															
TSC2	7249	MSKCC	GRCh37	16	2111956	2111956	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	249	982	1	ENST00000219476.3:c.1204G>T	p.Gly402Trp	p.G402W	ENST00000219476	NM_000548.3	402	Ggg/Tgg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2213997	2213997	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	51	1010	0	ENST00000326181.6:c.76A>G	p.Thr26Ala	p.T26A	ENST00000326181	NM_032271.2	26	Aca/Gca																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348740	11348740	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	305	1087	2	ENST00000332029.2:c.596T>C	p.Val199Ala	p.V199A	ENST00000332029	NM_003745.1	199	gTc/gCc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30134505	30134505	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	67	379	0	ENST00000263025.4:c.26del	p.Gly9AlafsTer23	p.G9Afs*23	ENST00000263025	NM_002746.2	9	gGc/gc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56865798	56865798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	131	471	0	ENST00000308159.5:c.1130G>T	p.Arg377Met	p.R377M	ENST00000308159	NM_014669.4	377	aGg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827231	72827231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	166	780	1	ENST00000268489.5:c.9350C>T	p.Ala3117Val	p.A3117V	ENST00000268489	NM_006885.3	3117	gCg/gTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944133	81944133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	176	729	1	ENST00000359376.3:c.1742G>A	p.Gly581Asp	p.G581D	ENST00000359376	NM_002661.3	581	gGc/gAc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15965104	15965104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	124	551	1	ENST00000268712.3:c.5492C>T	p.Ala1831Val	p.A1831V	ENST00000268712	NM_006311.3	1831	gCa/gTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29548875	29548875	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	146	987	1	ENST00000358273.4:c.1649T>C	p.Leu550Pro	p.L550P	ENST00000358273	NM_001042492.2	550	cTg/cCg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602901	10602901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	391	1264	0	ENST00000171111.5:c.677G>A	p.Cys226Tyr	p.C226Y	ENST00000171111	NM_203500.1	226	tGc/tAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11169552	11169552	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	148	930	0	ENST00000344626.4:c.4622T>C	p.Leu1541Pro	p.L1541P	ENST00000344626	NM_003072.3	1541	cTg/cCg																																																																															
CALR	811	MSKCC	GRCh37	19	13049513	13049513	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	59	970	0	ENST00000316448.5:c.20T>C	p.Leu7Pro	p.L7P	ENST00000316448	NM_004343.3	7	cTg/cCg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967091	18967092	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs1384543747		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	59	1039	2	ENST00000262803.5:c.1814_1815del	p.Glu605AlafsTer17	p.E605Afs*17	ENST00000262803	NM_002911.3	602	gcAGag/gcag																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906476	50906476	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	253	1128	1	ENST00000440232.2:c.1137G>T	p.Gln379His	p.Q379H	ENST00000440232	NM_002691.3	379	caG/caT																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	240	912	7	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																																
MYCN	4613	MSKCC	GRCh37	2	16085794	16085794	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	89	801	0	ENST00000281043.3:c.970C>A	p.Leu324Ile	p.L324I	ENST00000281043	NM_005378.4	324	Ctt/Att																																																																															
ALK	238	MSKCC	GRCh37	2	29430040	29430040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	199	908	0	ENST00000389048.3:c.3935C>T	p.Thr1312Ile	p.T1312I	ENST00000389048	NM_004304.4	1312	aCa/aTa																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47606137	47606138	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	65	827	0	ENST00000263735.4:c.607dup	p.Thr203AsnfsTer4	p.T203Nfs*4	ENST00000263735	NM_002354.2	201	caa/cAaa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198264800	198264800	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	184	794	0	ENST00000335508.6:c.2992A>C	p.Lys998Gln	p.K998Q	ENST00000335508	NM_012433.2	998	Aag/Cag																																																																															
CASP8	841	MSKCC	GRCh37	2	202149674	202149674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	200	776	0	ENST00000358485.4:c.1115G>A	p.Cys372Tyr	p.C372Y	ENST00000358485	NM_001080125.1	372	tGt/tAt																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735507	204735507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	105	656	0	ENST00000302823.3:c.308G>A	p.Cys103Tyr	p.C103Y	ENST00000302823	NM_005214.4	103	tGc/tAc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39741473	39741473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	187	727	1	ENST00000361337.2:c.1360G>A	p.Val454Met	p.V454M	ENST00000361337	NM_003286.2	454	Gtg/Atg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44514602	44514602	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	206	713	0	ENST00000291552.4:c.554T>C	p.Leu185Pro	p.L185P	ENST00000291552	NM_006758.2	185	cTg/cCg																																																																															
NF2	4771	MSKCC	GRCh37	22	30050676	30050676	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150667239		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	182	618	1	ENST00000338641.4:c.478C>T	p.Arg160Trp	p.R160W	ENST00000338641	NM_000268.3	160	Cgg/Tgg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626694	12626694	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	233	850	0	ENST00000251849.4:c.1595A>G	p.Tyr532Cys	p.Y532C	ENST00000251849	NM_002880.3	532	tAc/tGc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732913	30732913	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	41	307	0	ENST00000359013.4:c.1601G>A	p.Gly534Asp	p.G534D	ENST00000359013	NM_001024847.2	534	gGc/gAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161834	47161834	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	184	603	0	ENST00000409792.3:c.4292T>C	p.Val1431Ala	p.V1431A	ENST00000409792	NM_014159.6	1431	gTa/gCa																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119721054	119721054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	240	735	0	ENST00000316626.5:c.121G>A	p.Val41Met	p.V41M	ENST00000316626		41	Gtg/Atg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201768	66201768	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	184	804	0	ENST00000273854.3:c.2734C>G	p.Leu912Val	p.L912V	ENST00000273854	NM_004439.5	912	Ctg/Gtg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31421438	31421438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	167	894	0	ENST00000344624.3:c.3466C>A	p.Leu1156Met	p.L1156M	ENST00000344624		1156	Ctg/Atg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111485	56111485	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	33	239	0	ENST00000399503.3:c.85G>T	p.Gly29Ter	p.G29*	ENST00000399503	NM_005921.1	29	Gga/Tga																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815757	32815757	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	295	1172	2	ENST00000354258.4:c.1859del	p.Gly620AspfsTer44	p.G620Dfs*44	ENST00000354258	NM_000593.5	620	gGa/ga																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967242	93967242	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	104	480	0	ENST00000369303.4:c.2111-1G>A		p.X704_splice	ENST00000369303	NM_004440.3	704																																																																																
CARD11	84433	MSKCC	GRCh37	7	2963981	2963981	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	208	838	0	ENST00000396946.4:c.1826A>G	p.Tyr609Cys	p.Y609C	ENST00000396946	NM_032415.4	609	tAc/tGc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971277	13971277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	40	701	0	ENST00000405192.2:c.652C>T	p.Pro218Ser	p.P218S	ENST00000405192	NM_001163147.1	218	Cca/Tca																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509670	106509670	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	197	748	0	ENST00000359195.3:c.1664T>C	p.Leu555Ser	p.L555S	ENST00000359195	NM_002649.2	555	tTg/tCg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046312	69046312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	123	554	0	ENST00000288368.4:c.3785G>A	p.Arg1262His	p.R1262H	ENST00000288368	NM_024870.2	1262	cGt/cAt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090509	5090509	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	145	760	0	ENST00000381652.3:c.2829del	p.Lys943AsnfsTer6	p.K943Nfs*6	ENST00000381652	NM_004972.3	942	cAa/ca																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090859	5090859	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	87	425	0	ENST00000381652.3:c.3007C>T	p.Gln1003Ter	p.Q1003*	ENST00000381652	NM_004972.3	1003	Caa/Taa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402784	139402784	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	338	1196	0	ENST00000277541.6:c.3225G>A	p.Trp1075Ter	p.W1075*	ENST00000277541	NM_017617.3	1075	tgG/tgA																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040933	47040933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	301	636	0	ENST00000329236.7:c.1229C>T	p.Ala410Val	p.A410V	ENST00000329236	NM_001204466.1	410	gCc/gTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412657	63412657	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	179	419	0	ENST00000330258.3:c.510del	p.Gly171AlafsTer38	p.G171Afs*38	ENST00000330258	NM_152424.3	170	aaA/aa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0019485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	283	819	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
ATRX	546	MSKCC	GRCh37	X	76889108	76889108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	59	879	2	ENST00000373344.5:c.4902G>T	p.Trp1634Cys	p.W1634C	ENST00000373344	NM_000489.3	1634	tgG/tgT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433273	49433273	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	83	966	1	ENST00000301067.7:c.8174G>T	p.Ser2725Ile	p.S2725I	ENST00000301067	NM_003482.3	2725	aGc/aTc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28897032	28897032	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	44	676	0	ENST00000282397.4:c.2848G>T	p.Glu950Ter	p.E950*	ENST00000282397	NM_002019.4	950	Gaa/Taa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911251	32911251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	189	1020	1	ENST00000380152.3:c.2759C>T	p.Pro920Leu	p.P920L	ENST00000380152		920	cCc/cTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276327	15276327	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0019485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	180	925	0	ENST00000263388.2:c.5668-1G>T		p.X1890_splice	ENST00000263388	NM_000435.2	1890																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31019286	31019286	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0019485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	52	509	0	ENST00000375687.4:c.881A>T	p.Gln294Leu	p.Q294L	ENST00000375687	NM_015338.5	294	cAg/cTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589014	67589014	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	35	438	0	ENST00000274335.5:c.1105A>T	p.Thr369Ser	p.T369S	ENST00000274335		369	Act/Tct																																																																															
ATRX	546	MSKCC	GRCh37	X	76953089	76953089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	90	973	0	ENST00000373344.5:c.224G>T	p.Gly75Val	p.G75V	ENST00000373344	NM_000489.3	75	gGa/gTa																																																																															
XIAP	331	MSKCC	GRCh37	X	123020030	123020030	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	107	974	1	ENST00000355640.3:c.518G>T	p.Trp173Leu	p.W173L	ENST00000355640		173	tGg/tTg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671930	30671934	+	missense_variant	Missense_Mutation	ONP	TGAGC	TGAGC	AGAGC			P-0019485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	39	1003	1	ENST00000376406.3:c.5030delAinsT	p.Gln1677Leu	p.Q1677L	ENST00000376406	NM_014641.2	1677	GCTCAg/GCTCTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692962	89692964	+	stop_gained	Nonsense_Mutation	ONP	AAG	AAG	CAT			P-0019485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	56	868	1	ENST00000371953.3:c.446_448delinsCAT	p.Gln149_Glu150delinsProTer	p.Q149_E150delinsP*	ENST00000371953	NM_000314.4	149	cAAGag/cCATag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	162	915	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0019487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	228	887	1	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0019487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	148	483	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
AXL	558	MSKCC	GRCh37	19	41743948	41743948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	403	1244	0	ENST00000301178.4:c.883C>T	p.Arg295Trp	p.R295W	ENST00000301178	NM_021913.4	295	Cgg/Tgg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981777	201981777	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	55	870	0	ENST00000359651.3:c.488del	p.Ser163ThrfsTer91	p.S163Tfs*91	ENST00000359651		163	aGc/ac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710600	114710601	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	271	764	2	ENST00000543371.1:c.86dup	p.Lys30GlufsTer14	p.K30Efs*14	ENST00000543371	NM_001198531.1	29	gag/gAag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18962981	18962981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1132	411	1351	2	ENST00000262803.5:c.848C>T	p.Pro283Leu	p.P283L	ENST00000262803	NM_002911.3	283	cCg/cTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022400	31022422	+	frameshift_variant	Frame_Shift_Del	DEL	GGTCACCACTGCCATAGAGAGGC	GGTCACCACTGCCATAGAGAGGC	-			P-0019487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	157	296	0	ENST00000375687.4:c.1887_1909del	p.Glu635ArgfsTer15	p.E635Rfs*15	ENST00000375687	NM_015338.5	629	GGTCACCACTGCCATAGAGAGGCg/g																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265614	41266221	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTC	CTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTC	-			P-0019487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	218	478	0	ENST00000349496.5:c.13+46_222del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
PPP4R2	151987	MSKCC	GRCh37	3	73114222	73114222	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	195	521	0	ENST00000356692.5:c.858C>G	p.Asp286Glu	p.D286E	ENST00000356692		286	gaC/gaG																																																																															
HGF	3082	MSKCC	GRCh37	7	81340836	81340836	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	60	394	0	ENST00000222390.5:c.1406-1G>A		p.X469_splice	ENST00000222390	NM_000601.4	469																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53246429	53246429	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	300	434	0	ENST00000375401.3:c.553G>T	p.Glu185Ter	p.E185*	ENST00000375401	NM_004187.3	185	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	157	694	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38968098	38968098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	36	654	0	ENST00000357387.3:c.1007G>A	p.Arg336His	p.R336H	ENST00000357387	NM_152756.3	336	cGt/cAt																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870993	12870994	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0019488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	83	382	0	ENST00000228872.4:c.221dup	p.Tyr74Ter	p.Y74*	ENST00000228872	NM_004064.3	74	tac/tAac																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115710	8115711	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	94	584	0	ENST00000346208.3:c.1060dupC	p.Leu354ProfsTer17	p.L354Pfs*17	ENST00000346208		352	-/C																																																																															
CBFB	865	MSKCC	GRCh37	16	67063389	67063389	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0019488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	142	641	1	ENST00000412916.2:c.78+1G>A		p.X26_splice	ENST00000412916		26																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0019489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	107	806	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37672059	37672059	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0019489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	58	587	0	ENST00000447079.4:c.2844C>G	p.Ile948Met	p.I948M	ENST00000447079	NM_015083.1	948	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0019491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	211	865	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	177	704	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945351	151945352	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0019491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	34	271	0	ENST00000262189.6:c.2167_2168del	p.Glu723LysfsTer8	p.E723Kfs*8	ENST00000262189	NM_170606.2	723	GAa/a																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945396	151945403	+	frameshift_variant	Frame_Shift_Del	DEL	GAAATACT	GAAATACT	CAAAACC			P-0019491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	98	905	0	ENST00000262189.6:c.2116_2123delinsGGTTTTG	p.Ser706GlyfsTer12	p.S706Gfs*12	ENST00000262189	NM_170606.2	706	AGTATTTCa/GGTTTTGa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720676	89720676	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	41	381	0	ENST00000371953.3:c.827A>C	p.Asn276Thr	p.N276T	ENST00000371953	NM_000314.4	276	aAt/aCt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115982	8115983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	29	313	0	ENST00000346208.3:c.1330dupT	p.Ter444LeufsTer63	p.*444Lfs*63	ENST00000346208		443	ggt/ggTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	121	884	1	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551708	150551708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	40	371	1	ENST00000369026.2:c.299C>T	p.Ala100Val	p.A100V	ENST00000369026	NM_021960.4	100	gCg/gTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68844120	68844142	+	frameshift_variant	Frame_Shift_Del	DEL	ATCCAACGGGAATGCAGTTGAGG	ATCCAACGGGAATGCAGTTGAGG	-			P-0019493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	103	656	0	ENST00000261769.5:c.714_736del	p.Asn240AspfsTer10	p.N240Dfs*10	ENST00000261769	NM_004360.3	236	tcATCCAACGGGAATGCAGTTGAGGat/tcat																																																																															
BRCA1	672	MSKCC	GRCh37	17	41219665	41219665	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	111	643	0	ENST00000357654.3:c.5034T>G	p.Asn1678Lys	p.N1678K	ENST00000357654	NM_007294.3	1678	aaT/aaG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	25	759	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	95	689	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
RAD51	5888	MSKCC	GRCh37	15	41021774	41021774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	34	575	0	ENST00000267868.3:c.716C>T	p.Ser239Leu	p.S239L	ENST00000267868	NM_002875.4	239	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	69	741	0	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
FGFR2	2263	MSKCC	GRCh37	10	123325189	123325189	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	58	620	0	ENST00000358487.5:c.139C>G	p.Pro47Ala	p.P47A	ENST00000358487	NM_000141.4	47	Cca/Gca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420906	49420906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	46	733	0	ENST00000301067.7:c.14843C>T	p.Ser4948Leu	p.S4948L	ENST00000301067	NM_003482.3	4948	tCa/tTa																																																																															
AKT1	207	MSKCC	GRCh37	14	105243108	105243108	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	66	746	0	ENST00000349310.3:c.176-1G>A		p.X59_splice	ENST00000349310	NM_001014432.1	59																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10610225	10610225	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	57	936	0	ENST00000171111.5:c.485A>T	p.Tyr162Phe	p.Y162F	ENST00000171111	NM_203500.1	162	tAc/tTc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212293191	212293191	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	29	564	1	ENST00000342788.4:c.2661G>T	p.Met887Ile	p.M887I	ENST00000342788	NM_005235.2	887	atG/atT																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143067099	143067099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	34	613	0	ENST00000262992.4:c.1614G>T	p.Met538Ile	p.M538I	ENST00000262992	NM_001101669.1	538	atG/atT																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527796	157527796	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	27	534	0	ENST00000346085.5:c.5522del	p.Pro1841LeufsTer10	p.P1841Lfs*10	ENST00000346085	NM_020732.3	1841	Cct/ct																																																																															
CARD11	84433	MSKCC	GRCh37	7	2979529	2979529	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	56	663	0	ENST00000396946.4:c.718G>T	p.Glu240Ter	p.E240*	ENST00000396946	NM_032415.4	240	Gag/Tag																																																																															
PAX5	5079	MSKCC	GRCh37	9	37006472	37006472	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	27	410	0	ENST00000358127.4:c.473T>C	p.Ile158Thr	p.I158T	ENST00000358127	NM_001280556.1	158	aTa/aCa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39914675	39914675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	37	859	0	ENST00000378444.4:c.4687G>T	p.Gly1563Cys	p.G1563C	ENST00000378444	NM_001123385.1	1563	Ggt/Tgt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63409824	63409824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	42	570	0	ENST00000330258.3:c.3343G>A	p.Glu1115Lys	p.E1115K	ENST00000330258	NM_152424.3	1115	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0019496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	243	516	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440379	52440379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	174	446	0	ENST00000460680.1:c.673G>A	p.Asp225Asn	p.D225N	ENST00000460680	NM_004656.3	225	Gac/Aac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575671	48575671	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0019496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	220	769	0	ENST00000342988.3:c.431C>G	p.Ser144Ter	p.S144*	ENST00000342988	NM_005359.5	144	tCa/tGa																																																																															
CCND2	894	MSKCC	GRCh37	12	4387983	4387983	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	169	652	0	ENST00000261254.3:c.469C>G	p.His157Asp	p.H157D	ENST00000261254	NM_001759.3	157	Cat/Gat																																																																															
REL	5966	MSKCC	GRCh37	2	61148994	61148994	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0019496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	83	478	0	ENST00000295025.8:c.1184C>G	p.Ser395Ter	p.S395*	ENST00000295025	NM_002908.2	395	tCa/tGa																																																																															
REL	5966	MSKCC	GRCh37	2	61149237	61149237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	50	382	1	ENST00000295025.8:c.1427C>T	p.Ser476Phe	p.S476F	ENST00000295025	NM_002908.2	476	tCc/tTc																																																																															
REL	5966	MSKCC	GRCh37	2	61149285	61149285	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	46	373	0	ENST00000295025.8:c.1475C>G	p.Ser492Cys	p.S492C	ENST00000295025	NM_002908.2	492	tCt/tGt																																																																															
REL	5966	MSKCC	GRCh37	2	61149387	61149387	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	91	499	1	ENST00000295025.8:c.1577C>A	p.Ser526Ter	p.S526*	ENST00000295025	NM_002908.2	526	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0019500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	390	598	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435153	110435153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3877	268	823	1	ENST00000375856.3:c.3248C>T	p.Pro1083Leu	p.P1083L	ENST00000375856	NM_003749.2	1083	cCg/cTg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771987	135771988	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs118203743		P-0019500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	58	301	0	ENST00000298552.3:c.3127_3129dup	p.Ser1043dup	p.S1043dup	ENST00000298552	NM_001162426.1	1043	-/AGC																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138110	64138110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	211	653	0	ENST00000334205.4:c.2033G>A	p.Ser678Asn	p.S678N	ENST00000334205	NM_003942.2	678	aGc/aAc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662662	227662662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	154	543	1	ENST00000305123.5:c.793C>T	p.Arg265Cys	p.R265C	ENST00000305123	NM_005544.2	265	Cgc/Tgc																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858566	27858566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	41	185	0	ENST00000359303.2:c.5C>T	p.Ala2Val	p.A2V	ENST00000359303	NM_003535.2	2	gCc/gTc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64574675	64574675	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	247	667	0	ENST00000337652.1:c.815T>G	p.Leu272Arg	p.L272R	ENST00000337652	NM_130803.2	272	cTc/cGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	41	541	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727454	66727454	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	24	445	0	ENST00000307102.5:c.170A>C	p.Lys57Thr	p.K57T	ENST00000307102	NM_002755.3	57	aAg/aCg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453148	140453148	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	39	462	0	ENST00000288602.6:c.1787G>T	p.Gly596Val	p.G596V	ENST00000288602	NM_004333.4	596	gGt/gTt																																																																															
POLE	5426	MSKCC	GRCh37	12	133219164	133219164	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	67	759	0	ENST00000320574.5:c.4880A>G	p.His1627Arg	p.H1627R	ENST00000320574	NM_006231.2	1627	cAt/cGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991332	72991332	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	47	463	0	ENST00000268489.5:c.2713G>C	p.Ala905Pro	p.A905P	ENST00000268489	NM_006885.3	905	Gct/Cct																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2207642	2207642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	89	760	0	ENST00000398665.3:c.926C>A	p.Pro309Gln	p.P309Q	ENST00000398665	NM_032482.2	309	cCa/cAa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152118	11152118	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	58	599	0	ENST00000344626.4:c.4306G>T	p.Glu1436Ter	p.E1436*	ENST00000344626	NM_003072.3	1436	Gag/Tag																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372482	55372500	+	frameshift_variant	Frame_Shift_Del	DEL	GCCACGGGGCCATTTCCTC	GCCACGGGGCCATTTCCTC	-			P-0019507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	120	1227	0	ENST00000297316.4:c.1173_1191del	p.Ser391ArgfsTer57	p.S391Rfs*57	ENST00000297316	NM_022454.3	391	aGCCACGGGGCCATTTCCTCg/ag																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964431	70964431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	44	490	0	ENST00000276594.2:c.1597G>T	p.Asp533Tyr	p.D533Y	ENST00000276594	NM_024504.3	533	Gac/Tac																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411175	63411175	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	77	499	0	ENST00000330258.3:c.1992G>T	p.Met664Ile	p.M664I	ENST00000330258	NM_152424.3	664	atG/atT																																																																															
STAG2	10735	MSKCC	GRCh37	X	123229279	123229279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	32	348	0	ENST00000218089.9:c.3763G>A	p.Ala1255Thr	p.A1255T	ENST00000218089	NM_001042749.1	1255	Gct/Act																																																																															
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0019513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	331	906	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7572988	7572988	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	159	565	0	ENST00000269305.4:c.1121del	p.Gly374ValfsTer48	p.G374Vfs*48	ENST00000269305	NM_001126112.2	374	gGt/gt																																																																															
ALK	238	MSKCC	GRCh37	2	29443631	29443631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	281	824	0	ENST00000389048.3:c.3586C>A	p.Leu1196Met	p.L1196M	ENST00000389048	NM_004304.4	1196	Ctg/Atg																																																																															
ERG	2078	MSKCC	GRCh37	21	39763610	39763610	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	160	560	0	ENST00000288319.7:c.842C>G	p.Pro281Arg	p.P281R	ENST00000288319	NM_182918.3	281	cCc/cGc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509031	106509031	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	476	583	0	ENST00000359195.3:c.1025A>C	p.His342Pro	p.H342P	ENST00000359195	NM_002649.2	342	cAc/cCc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391214	89391214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	30	382	0	ENST00000336596.2:c.1280C>T	p.Ala427Val	p.A427V	ENST00000336596	NM_005233.5	427	gCg/gTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385222	41385222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	50	661	1	ENST00000373198.4:c.739C>T	p.Arg247Cys	p.R247C	ENST00000373198	NM_133170.3	247	Cgc/Tgc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970914	79970915	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	227	1080	7	ENST00000265081.6:c.1148dupA	p.Asn385GlnfsTer19	p.N385Qfs*19	ENST00000265081	NM_002439.4	380	-/A																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46733212	46733212	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	146	779	0	ENST00000371975.4:c.973G>T	p.Gly325Ter	p.G325*	ENST00000371975	NM_003579.3	325	Gga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380246	25380246	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	88	742	0	ENST00000256078.4:c.212A>G	p.Tyr71Cys	p.Y71C	ENST00000256078	NM_033360.2	71	tAc/tGc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107994	30107994	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	62	801	1	ENST00000331968.5:c.813C>A	p.His271Gln	p.H271Q	ENST00000331968	NM_002742.2	271	caC/caA																																																																															
TP53	7157	MSKCC	GRCh37	17	7579348	7579349	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAGA			P-0019514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	263	845	0	ENST00000269305.4:c.338_339insTCTT	p.His115LeufsTer35	p.H115Lfs*35	ENST00000269305	NM_001126112.2	113	ttc/ttTCTTc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867148	45867148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	49	846	2	ENST00000391945.4:c.971G>A	p.Arg324His	p.R324H	ENST00000391945	NM_000400.3	324	cGc/cAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163575	47163575	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	22	365	0	ENST00000409792.3:c.2551G>T	p.Glu851Ter	p.E851*	ENST00000409792	NM_014159.6	851	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112162882	112162883	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0019514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	128	701	0	ENST00000257430.4:c.1488_1489del	p.Leu497LysfsTer39	p.L497Kfs*39	ENST00000257430	NM_000038.5	496	ACa/a																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945071	151945071	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	108	831	1	ENST00000262189.6:c.2448C>A	p.Tyr816Ter	p.Y816*	ENST00000262189	NM_170606.2	816	taC/taA																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115961	8115964	+	frameshift_variant	Frame_Shift_Del	DEL	CCAG	CCAG	-			P-0019518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	114	338	0	ENST00000346208.3:c.1308_1311del	p.Ser437TrpfsTer37	p.S437Wfs*37	ENST00000346208		436	tCCAGc/tc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350973	89350976	+	frameshift_variant	Frame_Shift_Del	DEL	GTAA	GTAA	-			P-0019518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	404	1228	0	ENST00000301030.4:c.1974_1977del	p.Tyr659AsnfsTer15	p.Y659Nfs*15	ENST00000301030	NM_001256183.1	658	acTTAC/ac																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968233	134968233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	328	798	1	ENST00000398015.3:c.2746G>A	p.Val916Met	p.V916M	ENST00000398015	NM_004441.4	916	Gtg/Atg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0019520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	110	691	5	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673792	30673792	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	81	703	4	ENST00000376406.3:c.3168G>C	p.Gln1056His	p.Q1056H	ENST00000376406	NM_014641.2	1056	caG/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0019529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	319	752	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2126129	2126129	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	373	1005	0	ENST00000219476.3:c.2700C>A	p.Cys900Ter	p.C900*	ENST00000219476	NM_000548.3	900	tgC/tgA																																																																															
XPO1	7514	MSKCC	GRCh37	2	61706083	61706083	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	274	731	1	ENST00000401558.2:c.3088A>T	p.Thr1030Ser	p.T1030S	ENST00000401558	NM_003400.3	1030	Act/Tct																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845361	42845361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	51	832	0	ENST00000398585.3:c.901C>T	p.Pro301Ser	p.P301S	ENST00000398585	NM_001135099.1	301	Ccg/Tcg																																																																															
APC	324	MSKCC	GRCh37	5	112175456	112175457	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0019529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	232	318	0	ENST00000257430.4:c.4166_4167del	p.Ser1389CysfsTer5	p.S1389Cfs*5	ENST00000257430	NM_000038.5	1389	TCt/t																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265454	152265454	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	110	526	0	ENST00000206249.3:c.907A>G	p.Lys303Glu	p.K303E	ENST00000206249	NM_000125.3	303	Aag/Gag																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5522596	5522596	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	116	617	0	ENST00000397747.3:c.50T>C	p.Ile17Thr	p.I17T	ENST00000397747	NM_025239.3	17	aTa/aCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	93	437	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984846	11984846	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0019532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	114	513	0	ENST00000353533.5:c.392A>G	p.Lys131Arg	p.K131R	ENST00000353533	NM_003010.3	131	aAa/aGa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25458627	25458627	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	232	741	0	ENST00000264709.3:c.2546C>A	p.Pro849His	p.P849H	ENST00000264709	NM_175629.2	849	cCt/cAt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982403	25982403	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	208	464	0	ENST00000435504.4:c.887del	p.Pro296LeufsTer15	p.P296Lfs*15	ENST00000435504		296	cCt/ct																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22143071	22143071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019535-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			521	41	628	0	ENST00000215832.6:c.636G>T	p.Trp212Cys	p.W212C	ENST00000215832	NM_002745.4	212	tgG/tgT																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89156906	89156906	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019535-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			463	74	744	1	ENST00000336596.2:c.8G>T	p.Cys3Phe	p.C3F	ENST00000336596	NM_005233.5	3	tGt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	64	775	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0019538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	58	726	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974813	21974813	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	13	157	0	ENST00000304494.5:c.14del	p.Ala5GlyfsTer21	p.A5Gfs*21	ENST00000304494	NM_000077.4	5	gCg/gg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29005391	29005391	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	17	587	0	ENST00000282397.4:c.870C>A	p.Asn290Lys	p.N290K	ENST00000282397	NM_002019.4	290	aaC/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0019544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	105	667	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	154	626	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3790459	3790459	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	163	600	0	ENST00000262367.5:c.4074del	p.Phe1358LeufsTer18	p.F1358Lfs*18	ENST00000262367	NM_004380.2	1358	ttT/tt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	114	556	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	35	560	1	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	289	720	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440713	56440713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	144	689	1	ENST00000407977.2:c.505G>A	p.Ala169Thr	p.A169T	ENST00000407977		169	Gct/Act																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188296	32188296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	196	889	1	ENST00000375023.3:c.1045G>A	p.Gly349Ser	p.G349S	ENST00000375023	NM_004557.3	349	Ggc/Agc																																																																															
RB1	5925	MSKCC	GRCh37	13	48881489	48881490	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	76	399	1	ENST00000267163.4:c.219_220del	p.Arg73SerfsTer36	p.R73Sfs*36	ENST00000267163	NM_000321.2	71	AGa/a																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696410	47696410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	135	660	0	ENST00000347630.2:c.413G>A	p.Arg138His	p.R138H	ENST00000347630	NM_001007230.1	138	cGt/cAt																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349214	11349230	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCGCGGGCGCGCGGG	GGCCGCGGGCGCGCGGG	-			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	146	229	0	ENST00000332029.2:c.106_122del	p.Pro36ValfsTer75	p.P36Vfs*75	ENST00000332029	NM_003745.1	36	CCCGCGCGCCCGCGGCCg/g																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324917	31324917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	87	372	0	ENST00000412585.2:c.19delC	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000412585	NM_005514.6	7	Cga/ga																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458579	12458579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	153	783	1	ENST00000287820.6:c.1196C>T	p.Ala399Val	p.A399V	ENST00000287820	NM_015869.4	399	gCt/gTt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68864769	68864769	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	120	559	2	ENST00000288368.4:c.140C>T	p.Ser47Leu	p.S47L	ENST00000288368	NM_024870.2	47	tCg/tTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65349020	65349020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	84	431	0	ENST00000342505.4:c.145C>T	p.Arg49Trp	p.R49W	ENST00000342505	NM_002227.2	49	Cgg/Tgg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115276425	115276425	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	113	609	2	ENST00000438362.2:c.903del	p.Phe301LeufsTer13	p.F301Lfs*13	ENST00000438362	NM_001242891.1	301	ttT/tt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910841	114910841	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	137	646	0	ENST00000543371.1:c.960A>T	p.Lys320Asn	p.K320N	ENST00000543371	NM_001198531.1	320	aaA/aaT																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274749	123274749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	75	680	0	ENST00000358487.5:c.1169G>A	p.Cys390Tyr	p.C390Y	ENST00000358487	NM_000141.4	390	tGt/tAt																																																																															
WT1	7490	MSKCC	GRCh37	11	32417925	32417925	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1014605516		P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	125	667	1	ENST00000332351.3:c.1127C>T	p.Pro376Leu	p.P376L	ENST00000332351	NM_024426.4	376	cCg/cTg																																																																															
ATM	472	MSKCC	GRCh37	11	108186820	108186820	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778078		P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	41	709	0	ENST00000278616.4:c.6178C>T	p.Arg2060Cys	p.R2060C	ENST00000278616	NM_000051.3	2060	Cgc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108202201	108202201	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	76	479	0	ENST00000278616.4:c.7550del	p.Leu2517CysfsTer15	p.L2517Cfs*15	ENST00000278616	NM_000051.3	2516	Ttt/tt																																																																															
RB1	5925	MSKCC	GRCh37	13	48937034	48937035	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	77	428	0	ENST00000267163.4:c.806dup	p.Asn269LysfsTer2	p.N269Kfs*2	ENST00000267163	NM_000321.2	268	gaa/gAaa																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986703	36986703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	30	67	0	ENST00000354822.5:c.986C>T	p.Ala329Val	p.A329V	ENST00000354822	NM_001079668.2	329	gCg/gTg																																																																															
BLM	641	MSKCC	GRCh37	15	91333930	91333930	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	97	640	0	ENST00000355112.3:c.2875C>T	p.Arg959Ter	p.R959*	ENST00000355112	NM_000057.2	959	Cga/Tga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828498	72828498	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142218077		P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	148	635	0	ENST00000268489.5:c.8083C>T	p.Arg2695Trp	p.R2695W	ENST00000268489	NM_006885.3	2695	Cgg/Tgg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216419	7216419	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	172	793	0	ENST00000380728.2:c.829del	p.Gln277ArgfsTer68	p.Q277Rfs*68	ENST00000380728		277	Cag/ag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120049	70120049	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	14	76	0	ENST00000245479.2:c.1051C>T	p.Gln351Ter	p.Q351*	ENST00000245479	NM_000346.3	351	Cag/Tag																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622084	1622084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	211	1111	2	ENST00000344749.5:c.791C>T	p.Thr264Met	p.T264M	ENST00000344749	NM_001136139.2	264	aCg/aTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7125509	7125509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147176789		P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	62	655	0	ENST00000302850.5:c.3043G>A	p.Glu1015Lys	p.E1015K	ENST00000302850	NM_000208.2	1015	Gag/Aag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311640	15311640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	31	88	0	ENST00000263388.2:c.77C>T	p.Ala26Val	p.A26V	ENST00000263388	NM_000435.2	26	gCg/gTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350532	15350532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	190	938	1	ENST00000263377.2:c.3383C>T	p.Ser1128Leu	p.S1128L	ENST00000263377	NM_058243.2	1128	tCg/tTg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379692	17379692	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	56	826	0	ENST00000359435.4:c.77G>T	p.Arg26Leu	p.R26L	ENST00000359435	NM_001033549.1	26	cGc/cTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228563	36228564	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	218	969	0	ENST00000222270.7:c.7579dup	p.Leu2527ProfsTer10	p.L2527Pfs*10	ENST00000222270	NM_014727.1	2526	ttc/ttCc																																																																															
INHA	3623	MSKCC	GRCh37	2	220440022	220440022	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	257	1376	0	ENST00000243786.2:c.875A>G	p.His292Arg	p.H292R	ENST00000243786	NM_002191.3	292	cAt/cGt																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121329	29121329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	163	797	2	ENST00000328354.6:c.346G>A	p.Gly116Arg	p.G116R	ENST00000328354	NM_007194.3	116	Ggg/Agg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1955176	1955176	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	168	702	1	ENST00000382891.5:c.2263C>T	p.Arg755Ter	p.R755*	ENST00000382891	NM_133335.3	755	Cga/Tga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176631129	176631129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	104	510	0	ENST00000439151.2:c.1072C>T	p.Arg358Trp	p.R358W	ENST00000439151	NM_022455.4	358	Cgg/Tgg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176665365	176665365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	87	412	0	ENST00000439151.2:c.4049C>T	p.Pro1350Leu	p.P1350L	ENST00000439151	NM_022455.4	1350	cCg/cTg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670391	30670391	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	56	690	0	ENST00000376406.3:c.6041T>C	p.Met2014Thr	p.M2014T	ENST00000376406	NM_014641.2	2014	aTg/aCg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797749	32797749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	119	771	1	ENST00000374899.4:c.1753G>A	p.Ala585Thr	p.A585T	ENST00000374899	NM_018833.2	585	Gca/Aca																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129219	152129219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	238	968	2	ENST00000206249.3:c.172G>A	p.Ala58Thr	p.A58T	ENST00000206249	NM_000125.3	58	Gcc/Acc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135787753	135787753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	132	642	1	ENST00000298552.3:c.829G>A	p.Val277Met	p.V277M	ENST00000298552	NM_001162426.1	277	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0019547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	151	853	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962304	2962304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	133	707	0	ENST00000396946.4:c.2233G>A	p.Gly745Ser	p.G745S	ENST00000396946	NM_032415.4	745	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175300	112175301	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	92	239	0	ENST00000257430.4:c.4010dup	p.Gln1338AlafsTer4	p.Q1338Afs*4	ENST00000257430	NM_000038.5	1337	ctg/cTtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	104	772	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0019548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	56	428	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																																
GATA3	2625	MSKCC	GRCh37	10	8115750	8115750	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	47	618	1	ENST00000346208.3:c.1096C>T	p.Arg366Ter	p.R366*	ENST00000346208		366	Cga/Tga																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25505430	25505430	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	29	461	1	ENST00000264709.3:c.328C>T	p.Gln110Ter	p.Q110*	ENST00000264709	NM_175629.2	110	Cag/Tag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778781	3778786	+	inframe_deletion	In_Frame_Del	DEL	AATGTT	AATGTT	-			P-0019550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	241	1171	0	ENST00000262367.5:c.6262_6267del	p.Asn2088_Ile2089del	p.N2088_I2089del	ENST00000262367	NM_004380.2	2088	AACATT/-																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128047022	128047022	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	45	704	0	ENST00000285398.2:c.713C>G	p.Pro238Arg	p.P238R	ENST00000285398	NM_000122.1	238	cCa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0019553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	62	854	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
MET	4233	MSKCC	GRCh37	7	116411902	116411902	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0019553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	230	1091	0	ENST00000397752.3:c.2888-1G>A		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
INSR	3643	MSKCC	GRCh37	19	7128926	7128926	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	52	824	0	ENST00000302850.5:c.2882C>G	p.Pro961Arg	p.P961R	ENST00000302850	NM_000208.2	961	cCc/cGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0019558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	62	783	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73342987	73342987	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	57	603	0	ENST00000377767.4:c.1819A>T	p.Thr607Ser	p.T607S	ENST00000377767	NM_014953.3	607	Acc/Tcc																																																																															
HGF	3082	MSKCC	GRCh37	7	81374385	81374385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	72	613	0	ENST00000222390.5:c.677C>A	p.Thr226Lys	p.T226K	ENST00000222390	NM_000601.4	226	aCa/aAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	593	398	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0019559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	345	582	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
RAD51	5888	MSKCC	GRCh37	15	41011093	41011093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	102	525	0	ENST00000267868.3:c.526G>A	p.Glu176Lys	p.E176K	ENST00000267868	NM_002875.4	176	Gag/Aag																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460389	149460389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	92	558	1	ENST00000286301.3:c.248G>A	p.Arg83His	p.R83H	ENST00000286301	NM_005211.3	83	cGc/cAc																																																																															
RARA	5914	MSKCC	GRCh37	17	38512309	38512309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	441	977	0	ENST00000254066.5:c.1220C>T	p.Pro407Leu	p.P407L	ENST00000254066	NM_000964.3	407	cCg/cTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653841	89653850	+	frameshift_variant	Frame_Shift_Del	DEL	AGGAACAATA	AGGAACAATA	-			P-0019561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	187	631	0	ENST00000371953.3:c.139_148del	p.Arg47LeufsTer4	p.R47Lfs*4	ENST00000371953	NM_000314.4	47	AGGAACAATAtt/tt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711953	89711959	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGCAC	GTGGCAC	-			P-0019561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	242	633	0	ENST00000371953.3:c.571_577del	p.Val191CysfsTer6	p.V191Cfs*6	ENST00000371953	NM_000314.4	191	GTGGCACtg/tg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944143	71944143	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	329	787	0	ENST00000298229.2:c.1976C>G	p.Pro659Arg	p.P659R	ENST00000298229	NM_001567.3	659	cCc/cGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0019562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	199	849	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7579591	7579592	+	splice_acceptor_variant	Splice_Site	INS	-	-	G			P-0019562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	618	718	0	ENST00000269305.4:c.97-2_97-1insC		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
HLA-B	3106	MSKCC	GRCh37	6	31322931	31322933	+	inframe_deletion	In_Frame_Del	DEL	ACC	ACC	-			P-0019562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1765	381	1044	0	ENST00000412585.2:c.963_965del	p.Val322del	p.V322del	ENST00000412585	NM_005514.6	321	gtGGTc/gtc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980750	70980750	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	280	858	0	ENST00000276594.2:c.718C>G	p.Gln240Glu	p.Q240E	ENST00000276594	NM_024504.3	240	Caa/Gaa																																																																															
NBN	4683	MSKCC	GRCh37	8	90965780	90965780	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	121	379	0	ENST00000265433.3:c.1537C>G	p.Pro513Ala	p.P513A	ENST00000265433	NM_002485.4	513	Cct/Gct																																																																															
MET	4233	MSKCC	GRCh37	7	116422038	116422064	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCAGAATCCAACTGTAAAAGATCTTAT	GCAGAATCCAACTGTAAAAGATCTTAT	AG			P-0019562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	124	423	0	ENST00000397752.3:c.3523-4_3545delinsAG		p.X1175_splice	ENST00000397752	NM_000245.2	1175																																																																																
ATM	472	MSKCC	GRCh37	11	108201096	108201096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	93	600	0	ENST00000278616.4:c.7463G>T	p.Cys2488Phe	p.C2488F	ENST00000278616	NM_000051.3	2488	tGt/tTt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17941391	17941391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	323	1165	3	ENST00000458235.1:c.3017G>A	p.Arg1006His	p.R1006H	ENST00000458235	NM_000215.3	1006	cGc/cAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115696	8115701	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	GTTTAG	GTTTAG	AC			P-0019566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	60	551	0	ENST00000346208.3:c.1048-6_1048-1delinsAC		p.X350_splice	ENST00000346208		350																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	89	737	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0019567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	104	987	2	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412038	63412038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	88	411	0	ENST00000330258.3:c.1129G>A	p.Asp377Asn	p.D377N	ENST00000330258	NM_152424.3	377	Gat/Aat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627752	187627752	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	73	548	0	ENST00000441802.2:c.3230C>G	p.Ser1077Cys	p.S1077C	ENST00000441802	NM_005245.3	1077	tCt/tGt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775698	9775698	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	79	919	0	ENST00000377346.4:c.241G>C	p.Glu81Gln	p.E81Q	ENST00000377346	NM_005026.3	81	Gag/Cag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692918	89692918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	51	798	0	ENST00000371953.3:c.402G>A	p.Met134Ile	p.M134I	ENST00000371953	NM_000314.4	134	atG/atA																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863392	57863392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	118	956	2	ENST00000228682.2:c.1487G>A	p.Arg496His	p.R496H	ENST00000228682	NM_005269.2	496	cGc/cAc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25976422	25976422	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	69	716	0	ENST00000435504.4:c.1123G>C	p.Glu375Gln	p.E375Q	ENST00000435504		375	Gaa/Caa																																																																															
ALK	238	MSKCC	GRCh37	2	30142866	30142866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	97	872	1	ENST00000389048.3:c.660C>A	p.Phe220Leu	p.F220L	ENST00000389048	NM_004304.4	220	ttC/ttA																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84391455	84391455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	57	474	0	ENST00000321945.7:c.377C>T	p.Ser126Leu	p.S126L	ENST00000321945	NM_139076.2	126	tCa/tTa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117706949	117706949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	54	757	2	ENST00000368508.3:c.2201C>T	p.Thr734Met	p.T734M	ENST00000368508	NM_002944.2	734	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0019570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	548	797	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	530	641	0	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52438566	52438566	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	519	575	0	ENST00000460680.1:c.1153C>T	p.Arg385Ter	p.R385*	ENST00000460680	NM_004656.3	385	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11273567	11273567	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	244	660	0	ENST00000361445.4:c.3174A>C	p.Gln1058His	p.Q1058H	ENST00000361445	NM_004958.3	1058	caA/caC																																																																															
SDHB	6390	MSKCC	GRCh37	1	17355147	17355147	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	459	659	0	ENST00000375499.3:c.371T>C	p.Val124Ala	p.V124A	ENST00000375499	NM_003000.2	124	gTc/gCc																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599149	28599149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	758	1037	1	ENST00000253063.3:c.595G>A	p.Val199Ile	p.V199I	ENST00000253063	NM_031459.4	199	Gtc/Atc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458000	120458000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	361	533	0	ENST00000256646.2:c.7345G>T	p.Gly2449Ter	p.G2449*	ENST00000256646	NM_024408.3	2449	Gga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108183217	108183217	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	290	435	0	ENST00000278616.4:c.5998A>C	p.Ser2000Arg	p.S2000R	ENST00000278616	NM_000051.3	2000	Agt/Cgt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923364	9923364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	233	603	3	ENST00000330684.3:c.1923C>A	p.Phe641Leu	p.F641L	ENST00000330684	NM_001134407.1	641	ttC/ttA																																																																															
NF1	4763	MSKCC	GRCh37	17	29560040	29560040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	106	330	0	ENST00000358273.4:c.3517C>T	p.Leu1173Phe	p.L1173F	ENST00000358273	NM_001042492.2	1173	Ctc/Ttc																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804307	46804307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	562	687	0	ENST00000290295.7:c.700G>A	p.Glu234Lys	p.E234K	ENST00000290295	NM_006361.5	234	Gag/Aag																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78914311	78914311	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	527	706	2	ENST00000306801.3:c.2935G>T	p.Asp979Tyr	p.D979Y	ENST00000306801	NM_020761.2	979	Gac/Tac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602622	10602622	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	595	702	0	ENST00000171111.5:c.956G>C	p.Cys319Ser	p.C319S	ENST00000171111	NM_203500.1	319	tGc/tCc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143043281	143043281	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0019570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	401	487	0	ENST00000262992.4:c.2135G>T	p.Arg712Leu	p.R712L	ENST00000262992	NM_001101669.1	712	cGa/cTa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149457721	149457721	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	668	879	0	ENST00000286301.3:c.683G>T	p.Ser228Ile	p.S228I	ENST00000286301	NM_005211.3	228	aGc/aTc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180040064	180040064	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2055	150	1050	1	ENST00000261937.6:c.3378G>T	p.Gln1126His	p.Q1126H	ENST00000261937	NM_182925.4	1126	caG/caT																																																																															
SYK	6850	MSKCC	GRCh37	9	93650050	93650050	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	406	522	3	ENST00000375746.1:c.1601G>T	p.Trp534Leu	p.W534L	ENST00000375746	NM_001174167.1	534	tGg/tTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98268719	98268719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1191	398	547	1	ENST00000331920.6:c.364G>A	p.Glu122Lys	p.E122K	ENST00000331920	NM_000264.3	122	Gag/Aag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040904	47040904	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0019570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	669	416	1	ENST00000329236.7:c.1202-2A>G		p.X401_splice	ENST00000329236	NM_001204466.1	401																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	264	854	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778764	3778764	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	28	981	0	ENST00000262367.5:c.6284A>C	p.Gln2095Pro	p.Q2095P	ENST00000262367	NM_004380.2	2095	cAg/cCg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56490331	56490332	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0019581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	89	505	0	ENST00000267101.3:c.2100_2101del	p.Leu700PhefsTer13	p.L700Ffs*13	ENST00000267101	NM_001982.3	700	ttGGcc/ttcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426491	49426506	+	protein_altering_variant	In_Frame_Del	DEL	AGGGCCAAGTGCCACT	AGGGCCAAGTGCCACT	G			P-0019581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	52	1030	0	ENST00000301067.7:c.11982_11997delinsC	p.Gln3994_Pro3999delinsHis	p.Q3994_P3999delinsH	ENST00000301067	NM_003482.3	3994	caAGTGGCACTTGGCCCT/caC																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	394	738	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274195	10274195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	130	480	1	ENST00000330684.3:c.74C>T	p.Ala25Val	p.A25V	ENST00000330684	NM_001134407.1	25	gCg/gTg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871199	12871199	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	212	319	1	ENST00000228872.4:c.429del	p.Leu144Ter	p.L144*	ENST00000228872	NM_004064.3	142	acG/ac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431298	49431298	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	116	437	0	ENST00000301067.7:c.9841C>T	p.Gln3281Ter	p.Q3281*	ENST00000301067	NM_003482.3	3281	Cag/Tag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060551	38060571	+	coding_sequence_variant,3_prime_UTR_variant	In_Frame_Del	DEL	AACCCCCCAGTCCCGGGAGCT	AACCCCCCAGTCCCGGGAGCT	-			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	513	841	0	ENST00000250448.2:c.1418_*19delAGCTCCCGGGACTGGGGGGTT		p.*473*	ENST00000250448	NM_004496.3	473																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81944238	81944238	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	487	791	0	ENST00000359376.3:c.1847A>C	p.His616Pro	p.H616P	ENST00000359376	NM_002661.3	616	cAc/cCc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224535	36224535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1156	320	1252	2	ENST00000222270.7:c.6997G>A	p.Gly2333Arg	p.G2333R	ENST00000222270	NM_014727.1	2333	Ggg/Agg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45873458	45873458	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	379	784	0	ENST00000391945.4:c.38del	p.Pro13ArgfsTer43	p.P13Rfs*43	ENST00000391945	NM_000400.3	13	cCg/cg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44527574	44527574	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	169	710	1	ENST00000291552.4:c.31A>T	p.Thr11Ser	p.T11S	ENST00000291552	NM_006758.2	11	Acc/Tcc																																																																															
EP300	2033	MSKCC	GRCh37	22	41553353	41553353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	57	801	0	ENST00000263253.7:c.3442G>A	p.Val1148Ile	p.V1148I	ENST00000263253	NM_001429.3	1148	Gtc/Atc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138474649	138474649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	187	795	1	ENST00000289153.2:c.344G>A	p.Ser115Asn	p.S115N	ENST00000289153	NM_006219.2	115	aGt/aAt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576482	67576482	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	233	601	0	ENST00000274335.5:c.761C>A	p.Ser254Tyr	p.S254Y	ENST00000274335		254	tCc/tAc																																																																															
ABL1	25	MSKCC	GRCh37	9	133759951	133759968	+	inframe_deletion	In_Frame_Del	DEL	GAAGCCGGCTCTGCCTCG	GAAGCCGGCTCTGCCTCG	-			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	502	1067	0	ENST00000318560.5:c.2278_2295del	p.Pro760_Lys765del	p.P760_K765del	ENST00000318560	NM_005157.4	758	gaGAAGCCGGCTCTGCCTCGg/gag																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913233		P-0019584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	437	941	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966872	25966873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	150	507	0	ENST00000435504.4:c.2333dupC	p.Val779SerfsTer25	p.V779Sfs*25	ENST00000435504		778	cca/ccCa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061247	38061247	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	714	860	0	ENST00000250448.2:c.742C>G	p.Pro248Ala	p.P248A	ENST00000250448	NM_004496.3	248	Ccg/Gcg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879622	151879622	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	35	345	0	ENST00000262189.6:c.5323C>T	p.Gln1775Ter	p.Q1775*	ENST00000262189	NM_170606.2	1775	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0019593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	43	566	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	65	608	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0019593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	108	590	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	288	642	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175531	112175532	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	62	362	0	ENST00000257430.4:c.4241dup	p.Ser1415LysfsTer8	p.S1415Kfs*8	ENST00000257430	NM_000038.5	1414	gta/gTta																																																																															
TERT	7015	MSKCC	GRCh37	5	1295226	1295226	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0019593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	93	438	0				ENST00000310581	NM_198253.2																																																																																	
TBX3	6926	MSKCC	GRCh37	12	115114193	115114193	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	209	738	0	ENST00000257566.3:c.1024G>T	p.Glu342Ter	p.E342*	ENST00000257566	NM_016569.3	342	Gaa/Taa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213503	36213503	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	217	1144	0	ENST00000222270.7:c.2605A>C	p.Lys869Gln	p.K869Q	ENST00000222270	NM_014727.1	869	Aaa/Caa																																																																															
PMS1	5378	MSKCC	GRCh37	2	190656573	190656573	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0019593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	38	254	0	ENST00000441310.2:c.38C>G	p.Ser13Ter	p.S13*	ENST00000441310	NM_000534.4	13	tCa/tGa																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665248	138665248	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	220	1065	0	ENST00000330315.3:c.317T>A	p.Leu106His	p.L106H	ENST00000330315	NM_023067.3	106	cTc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0019597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	77	689	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	241	832	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	218	648	0				ENST00000310581	NM_198253.2																																																																																	
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	537	866	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	286	891	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551682	150551682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	175	478	0	ENST00000369026.2:c.325G>A	p.Glu109Lys	p.E109K	ENST00000369026	NM_021960.4	109	Gag/Aag																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	154	538	5	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22127164	22127164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	183	556	2	ENST00000215832.6:c.964G>A	p.Glu322Lys	p.E322K	ENST00000215832	NM_002745.4	322	Gag/Aag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879604	37879604	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1196929947		P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	569	1056	2	ENST00000269571.5:c.1979G>A	p.Gly660Asp	p.G660D	ENST00000269571		660	gGc/gAc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685313	86685313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	74	250	0	ENST00000274376.6:c.3029G>A	p.Arg1010Gln	p.R1010Q	ENST00000274376	NM_002890.2	1010	cGa/cAa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021182	31021182	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201899433		P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	292	831	1	ENST00000375687.4:c.1181G>A	p.Arg394His	p.R394H	ENST00000375687	NM_015338.5	394	cGt/cAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041373	47041373	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	315	560	1	ENST00000329236.7:c.1483C>T	p.Gln495Ter	p.Q495*	ENST00000329236	NM_001204466.1	495	Cag/Tag																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52724361	52724361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	199	593	2	ENST00000322088.6:c.1493G>A	p.Arg498His	p.R498H	ENST00000322088	NM_014225.5	498	cGc/cAc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134160	41134160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	19	457	0	ENST00000379561.5:c.1468C>T	p.Arg490Trp	p.R490W	ENST00000379561	NM_002015.3	490	Cgg/Tgg																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	221	785	1	ENST00000262741.5:c.883delA	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	299	949	7	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211898	36211899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775294431		P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1586	373	1422	3	ENST00000222270.7:c.1656dup	p.Lys553GlnfsTer46	p.K553Qfs*46	ENST00000222270	NM_014727.1	550	gac/gaCc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294124	1294124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2155	353	1312	4	ENST00000310581.5:c.877C>T	p.Arg293Cys	p.R293C	ENST00000310581	NM_198253.2	293	Cgc/Tgc																																																																															
JUN	3725	MSKCC	GRCh37	1	59248106	59248106	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	63	233	0	ENST00000371222.2:c.637del	p.Gln213SerfsTer13	p.Q213Sfs*13	ENST00000371222	NM_002228.3	213	Cag/ag																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241963	72241963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	99	399	0	ENST00000357731.5:c.427G>A	p.Asp143Asn	p.D143N	ENST00000357731	NM_173808.2	143	Gac/Aac																																																																															
TET1	80312	MSKCC	GRCh37	10	70333971	70333971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	385	625	0	ENST00000373644.4:c.1876G>A	p.Glu626Lys	p.E626K	ENST00000373644	NM_030625.2	626	Gag/Aag																																																																															
TET1	80312	MSKCC	GRCh37	10	70406108	70406108	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	243	777	0	ENST00000373644.4:c.3622A>G	p.Thr1208Ala	p.T1208A	ENST00000373644	NM_030625.2	1208	Act/Gct																																																																															
BIRC3	330	MSKCC	GRCh37	11	102201939	102201942	+	frameshift_variant	Frame_Shift_Del	DEL	GAGA	GAGA	-			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	122	404	0	ENST00000263464.3:c.1295_1298del	p.Arg432LysfsTer14	p.R432Kfs*14	ENST00000263464	NM_001165.4	431	GAGAga/ga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416112	49416112	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	197	597	0	ENST00000301067.7:c.16363A>C	p.Ile5455Leu	p.I5455L	ENST00000301067	NM_003482.3	5455	Ata/Cta																																																																															
FLT3	2322	MSKCC	GRCh37	13	28599069	28599069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	182	651	2	ENST00000241453.7:c.2219C>T	p.Ser740Leu	p.S740L	ENST00000241453	NM_004119.2	740	tCa/tTa																																																																															
RB1	5925	MSKCC	GRCh37	13	48947622	48947622	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	125	470	0	ENST00000267163.4:c.1209T>G	p.Tyr403Ter	p.Y403*	ENST00000267163	NM_000321.2	403	taT/taG																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103519037	103519037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	223	554	0	ENST00000355739.4:c.2375C>T	p.Ala792Val	p.A792V	ENST00000355739	NM_000123.3	792	gCg/gTg																																																																															
CYLD	1540	MSKCC	GRCh37	16	50826565	50826565	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	153	512	0	ENST00000398568.2:c.2296del	p.Ile766PhefsTer7	p.I766Ffs*7	ENST00000398568	NM_001042412.1	764	Aaa/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830616	72830616	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149779567		P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	238	885	0	ENST00000268489.5:c.5965G>A	p.Gly1989Ser	p.G1989S	ENST00000268489	NM_006885.3	1989	Ggc/Agc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657587	37657587	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	257	810	1	ENST00000447079.4:c.2504A>G	p.His835Arg	p.H835R	ENST00000447079	NM_015083.1	835	cAt/cGt																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40444050	40444050	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	230	798	0	ENST00000345506.4:c.346G>C	p.Glu116Gln	p.E116Q	ENST00000345506	NM_003152.3	116	Gaa/Caa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41197783	41197783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	290	904	1	ENST00000357654.3:c.5504G>A	p.Arg1835Gln	p.R1835Q	ENST00000357654	NM_007294.3	1835	cGa/cAa																																																																															
INSR	3643	MSKCC	GRCh37	19	7132295	7132295	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs575954707		P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	199	705	0	ENST00000302850.5:c.2716G>A	p.Ala906Thr	p.A906T	ENST00000302850	NM_000208.2	906	Gct/Act																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350204	15350204	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	311	967	4	ENST00000263377.2:c.3575del	p.Lys1192ArgfsTer3	p.K1192Rfs*3	ENST00000263377	NM_058243.2	1192	aAg/ag																																																																															
AXL	558	MSKCC	GRCh37	19	41749571	41749571	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200850031		P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	304	1075	2	ENST00000301178.4:c.1496G>A	p.Arg499His	p.R499H	ENST00000301178	NM_021913.4	499	cGc/cAc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39216450	39216450	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	172	747	0	ENST00000402219.2:c.3352G>C	p.Asp1118His	p.D1118H	ENST00000402219	NM_005633.3	1118	Gat/Cat																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027883	48027883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	150	449	0	ENST00000234420.5:c.2761G>A	p.Ala921Thr	p.A921T	ENST00000234420	NM_000179.2	921	Gct/Act																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288901	212288901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	85	330	0	ENST00000342788.4:c.2845G>A	p.Val949Ile	p.V949I	ENST00000342788	NM_005235.2	949	Gtt/Att																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793363	242793363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	336	1211	0	ENST00000334409.5:c.714del	p.Val239CysfsTer39	p.V239Cfs*39	ENST00000334409	NM_005018.2	238	ccC/cc																																																																															
EP300	2033	MSKCC	GRCh37	22	41553359	41553359	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	221	784	0	ENST00000263253.7:c.3448G>C	p.Glu1150Gln	p.E1150Q	ENST00000263253	NM_001429.3	1150	Gaa/Caa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070411	37070412	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGG			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	191	372	0	ENST00000231790.2:c.1546_1547insCGGG	p.Gln516ProfsTer5	p.Q516Pfs*5	ENST00000231790	NM_000249.3	516	cag/cCGGGag																																																																															
SDHA	6389	MSKCC	GRCh37	5	233748	233748	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	1053	879	0	ENST00000264932.6:c.1052T>A	p.Ile351Asn	p.I351N	ENST00000264932	NM_004168.2	351	aTc/aAc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864422	162864422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	218	799	0	ENST00000366898.1:c.91G>A	p.Ala31Thr	p.A31T	ENST00000366898	NM_004562.2	31	Gct/Act																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026972	6026972	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	109	421	0	ENST00000265849.7:c.1424T>C	p.Val475Ala	p.V475A	ENST00000265849	NM_000535.5	475	gTg/gCg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729610	41729610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	183	652	1	ENST00000242208.4:c.919C>T	p.Arg307Trp	p.R307W	ENST00000242208	NM_002192.2	307	Cgg/Tgg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738644	145738644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs571684398		P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	271	819	1	ENST00000428558.2:c.2420G>A	p.Arg807His	p.R807H	ENST00000428558	NM_004260.3	807	cGt/cAt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413109	63413109	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	231	504	0	ENST00000330258.3:c.58A>G	p.Thr20Ala	p.T20A	ENST00000330258	NM_152424.3	20	Acc/Gcc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070413	37070413	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	195	367	0	ENST00000231790.2:c.1548G>C	p.Gln516His	p.Q516H	ENST00000231790	NM_000249.3	516	caG/caC																																																																															
MLH1	4292	MSKCC	GRCh37	3	37070412	37070412	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	25	372	0	ENST00000231790.2:c.1547A>C	p.Gln516Pro	p.Q516P	ENST00000231790	NM_000249.3	516	cAg/cCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	36	630	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	632	642	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	107	779	1	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
YES1	7525	MSKCC	GRCh37	18	756577	756577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	65	580	0	ENST00000314574.4:c.251C>T	p.Ser84Leu	p.S84L	ENST00000314574	NM_005433.3	84	tCa/tTa																																																																															
CCND2	894	MSKCC	GRCh37	12	4409104	4409104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	46	539	0	ENST00000261254.3:c.799G>A	p.Asp267Asn	p.D267N	ENST00000261254	NM_001759.3	267	Gac/Aac																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246324	46246324	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	49	435	0	ENST00000334344.6:c.4418C>G	p.Ser1473Cys	p.S1473C	ENST00000334344	NM_152641.2	1473	tCt/tGt																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46603687	46603687	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	67	593	0	ENST00000263734.3:c.1044G>C	p.Glu348Asp	p.E348D	ENST00000263734	NM_001430.4	348	gaG/gaC																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252892	36252893	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	135	438	0	ENST00000300305.3:c.469dup	p.Arg157LysfsTer3	p.R157Kfs*3	ENST00000300305		157	aga/aAga																																																																															
NF2	4771	MSKCC	GRCh37	22	30069309	30069309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	58	777	2	ENST00000338641.4:c.1174G>A	p.Glu392Lys	p.E392K	ENST00000338641	NM_000268.3	392	Gag/Aag																																																																															
MLH1	4292	MSKCC	GRCh37	3	37061805	37061805	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	42	600	0	ENST00000231790.2:c.889G>C	p.Glu297Gln	p.E297Q	ENST00000231790	NM_000249.3	297	Gaa/Caa																																																																															
RHOA	387	MSKCC	GRCh37	3	49399938	49399938	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	64	602	0	ENST00000418115.1:c.399G>C	p.Lys133Asn	p.K133N	ENST00000418115	NM_001664.2	133	aaG/aaC																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324609	31324609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	31	385	0	ENST00000412585.2:c.199C>T	p.Pro67Ser	p.P67S	ENST00000412585	NM_005514.6	67	Ccg/Tcg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98242349	98242349	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	47	576	0	ENST00000331920.6:c.969G>C	p.Leu323Phe	p.L323F	ENST00000331920	NM_000264.3	323	ttG/ttC																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907155	101907155	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	43	506	0	ENST00000374994.4:c.1115G>C	p.Arg372Thr	p.R372T	ENST00000374994	NM_004612.2	372	aGa/aCa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041164	47041164	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	89	851	0	ENST00000329236.7:c.1358C>G	p.Ser453Ter	p.S453*	ENST00000329236	NM_001204466.1	453	tCa/tGa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519922		P-0019605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	303	671	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	309	576	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971207	21971207	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0019605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	219	447	0	ENST00000304494.5:c.151delG	p.Val51SerfsTer2	p.V51Sfs*2	ENST00000304494	NM_000077.4	51	Gtc/tc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411447	63411447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	30	404	0	ENST00000330258.3:c.1720C>T	p.Arg574Trp	p.R574W	ENST00000330258	NM_152424.3	574	Cgg/Tgg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740106	162740106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	137	380	0	ENST00000367921.3:c.1308G>T	p.Met436Ile	p.M436I	ENST00000367921	NM_006182.2	436	atG/atT																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786142	3786142	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	64	704	0	ENST00000262367.5:c.4623A>T	p.Glu1541Asp	p.E1541D	ENST00000262367	NM_004380.2	1541	gaA/gaT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224279	36224279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	352	834	0	ENST00000222270.7:c.6829C>T	p.Arg2277Cys	p.R2277C	ENST00000222270	NM_014727.1	2277	Cgc/Tgc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902125	50902125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	228	467	0	ENST00000440232.2:c.17G>T	p.Arg6Leu	p.R6L	ENST00000440232	NM_002691.3	6	cGg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713466	40713466	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	302	692	2	ENST00000373198.4:c.4049T>C	p.Ile1350Thr	p.I1350T	ENST00000373198	NM_133170.3	1350	aTa/aCa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134885782	134885782	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0019605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	247	547	0	ENST00000398015.3:c.1695-2A>T		p.X565_splice	ENST00000398015	NM_004441.4	565																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153253750	153253751	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	168	326	0	ENST00000281708.4:c.982dup	p.Glu328GlyfsTer4	p.E328Gfs*4	ENST00000281708	NM_033632.3	328	gag/gGag																																																																															
APC	324	MSKCC	GRCh37	5	112174483	112174483	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	125	394	0	ENST00000257430.4:c.3192del	p.Glu1064AspfsTer62	p.E1064Dfs*62	ENST00000257430	NM_000038.5	1064	gaG/ga																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662588	117662588	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	200	389	0	ENST00000368508.3:c.4877C>A	p.Ser1626Tyr	p.S1626Y	ENST00000368508	NM_002944.2	1626	tCt/tAt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152163802	152163802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	246	464	0	ENST00000206249.3:c.523G>A	p.Ala175Thr	p.A175T	ENST00000206249	NM_000125.3	175	Gct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0019618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	182	796	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981505	201981505	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	156	939	0	ENST00000359651.3:c.419T>C	p.Ile140Thr	p.I140T	ENST00000359651		140	aTt/aCt																																																																															
PGR	5241	MSKCC	GRCh37	11	100909944	100909944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	176	777	0	ENST00000325455.5:c.2705G>A	p.Ser902Asn	p.S902N	ENST00000325455	NM_001202474.3	902	aGt/aAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914531	32914562	+	frameshift_variant	Frame_Shift_Del	DEL	AGTATTGTTTAAAAGTAACGAACATTCAGACC	AGTATTGTTTAAAAGTAACGAACATTCAGACC	-			P-0019618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	180	932	0	ENST00000380152.3:c.6041_6072del	p.Val2014AlafsTer24	p.V2014Afs*24	ENST00000380152		2013	aaAGTATTGTTTAAAAGTAACGAACATTCAGACCag/aaag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575206	48575206	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	112	419	0	ENST00000342988.3:c.400G>T	p.Glu134Ter	p.E134*	ENST00000342988	NM_005359.5	134	Gaa/Taa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395024	139395024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	166	633	0	ENST00000277541.6:c.5914G>A	p.Asp1972Asn	p.D1972N	ENST00000277541	NM_017617.3	1972	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0019621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	60	739	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047888	180047888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	27	1048	0	ENST00000261937.6:c.2287G>A	p.Val763Met	p.V763M	ENST00000261937	NM_182925.4	763	Gtg/Atg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213242	39213243	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	40	998	3	ENST00000402219.2:c.3724dup	p.Ser1242LysfsTer2	p.S1242Kfs*2	ENST00000402219	NM_005633.3	1242	agt/aAgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577529	7577543	+	inframe_deletion	In_Frame_Del	DEL	ATGGGCCTCCGGTTC	ATGGGCCTCCGGTTC	-			P-0019622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	235	862	0	ENST00000269305.4:c.738_752del	p.Met246_Pro250del	p.M246_P250del	ENST00000269305	NM_001126112.2	246	atGAACCGGAGGCCCATc/atc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162293	47162293	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	104	494	0	ENST00000409792.3:c.3833A>G	p.Tyr1278Cys	p.Y1278C	ENST00000409792	NM_014159.6	1278	tAt/tGt																																																																															
TET2	54790	MSKCC	GRCh37	4	106197086	106197086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	75	413	0	ENST00000380013.4:c.5419G>A	p.Asp1807Asn	p.D1807N	ENST00000380013	NM_001127208.2	1807	Gat/Aat																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931588		P-0019624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	165	416	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0019624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	292	705	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176722327	176722328	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAGCAC			P-0019624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	60	550	0	ENST00000439151.2:c.7959_7964dup	p.Ser2654_Thr2655dup	p.S2654_T2655dup	ENST00000439151	NM_022455.4	2654	ggg/ggGAGCACg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117658346	117658356	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCTTTCTGG	AAGCTTTCTGG	-			P-0019624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	193	1064	0	ENST00000368508.3:c.5227_5237del	p.Pro1743Ter	p.P1743*	ENST00000368508	NM_002944.2	1743	CCAGAAAGCTTt/t																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	143	916	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	189	903	1	ENST00000269305.4:c.517G>C	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ctg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741886	17741886	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	51	184	0	ENST00000250003.3:c.557C>A	p.Pro186Gln	p.P186Q	ENST00000250003	NM_002478.4	186	cCg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0019626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	216	546	5	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
AXL	558	MSKCC	GRCh37	19	41765474	41765474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	137	891	0	ENST00000301178.4:c.2350C>T	p.Arg784Trp	p.R784W	ENST00000301178	NM_021913.4	784	Cgg/Tgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	394	724	0	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	402217	402217	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	217	1013	1	ENST00000399788.2:c.4574A>C	p.Lys1525Thr	p.K1525T	ENST00000399788	NM_001042603.1	1525	aAg/aCg																																																																															
CD276	80381	MSKCC	GRCh37	15	73994910	73994910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	17	150	0	ENST00000318443.5:c.394G>A	p.Ala132Thr	p.A132T	ENST00000318443	NM_001024736.1	132	Gct/Act																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390162	89390162	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	131	524	4	ENST00000336596.2:c.911G>T	p.Cys304Phe	p.C304F	ENST00000336596	NM_005233.5	304	tGc/tTc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934364	39934364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	366	745	5	ENST00000378444.4:c.235C>T	p.Arg79Trp	p.R79W	ENST00000378444	NM_001123385.1	79	Cgg/Tgg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115875	8115879	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCT	GCCCT	-			P-0019627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	138	802	0	ENST00000346208.3:c.1221_1225delGCCCT	p.Pro408GlnfsTer97	p.P408Qfs*97	ENST00000346208		407	tcGCCCTtc/tctc																																																																															
MYD88	4615	MSKCC	GRCh37	3	38180390	38180390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	201	853	1	ENST00000396334.3:c.238C>A	p.Gln80Lys	p.Q80K	ENST00000396334	NM_002468.4	80	Caa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	80	670	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	78	442	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573628	48573628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	39	504	1	ENST00000342988.3:c.212G>T	p.Cys71Phe	p.C71F	ENST00000342988	NM_005359.5	71	tGt/tTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971192	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCGCT	GGGCGCT	-			P-0019628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	62	475	0	ENST00000304494.5:c.166_172del	p.Ser56GlufsTer88	p.S56Efs*88	ENST00000304494	NM_000077.4	56	AGCGCCCga/ga																																																																															
ATM	472	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	14	676	0	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119789	70119789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	408	826	0	ENST00000245479.2:c.791G>A	p.Arg264Lys	p.R264K	ENST00000245479	NM_000346.3	264	aGa/aAa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3808901	3808901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	330	743	0	ENST00000262367.5:c.3323C>T	p.Ser1108Leu	p.S1108L	ENST00000262367	NM_004380.2	1108	tCa/tTa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983361	15983361	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	222	453	2	ENST00000268712.3:c.3418C>T	p.Gln1140Ter	p.Q1140*	ENST00000268712	NM_006311.3	1140	Caa/Taa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600407	10600407	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1238	113	1073	1	ENST00000171111.5:c.1448G>T	p.Arg483Leu	p.R483L	ENST00000171111	NM_203500.1	483	cGc/cTc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49935090	49935090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	104	794	1	ENST00000296474.3:c.1909G>C	p.Glu637Gln	p.E637Q	ENST00000296474	NM_002447.2	637	Gag/Cag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100093	157100120	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCGGCGGCGGCAGCAGCAGGAGGCG	GCGGCGGCGGCGGCAGCAGCAGGAGGCG	-			P-0019631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	57	47	0	ENST00000346085.5:c.1044_1071del	p.Ala349MetfsTer11	p.A349Mfs*11	ENST00000346085	NM_020732.3	344	GCGGCGGCGGCGGCAGCAGCAGGAGGCGgc/gc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0019632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	33	538	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0019632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	41	830	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087395	27087395	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	57	816	0	ENST00000324856.7:c.1969C>G	p.Leu657Val	p.L657V	ENST00000324856	NM_006015.4	657	Ctg/Gtg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151856053	151856054	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	44	589	0	ENST00000262189.6:c.11564dup	p.Arg3856GlufsTer4	p.R3856Efs*4	ENST00000262189	NM_170606.2	3855	cag/caAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859891	151859891	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	29	425	0	ENST00000262189.6:c.10771C>T	p.Gln3591Ter	p.Q3591*	ENST00000262189	NM_170606.2	3591	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0019636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	197	558	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
CDH1	999	MSKCC	GRCh37	16	68835629	68835629	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	283	720	1	ENST00000261769.5:c.220C>T	p.Arg74Ter	p.R74*	ENST00000261769	NM_004360.3	74	Cga/Tga																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577152	64577152	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	375	965	0	ENST00000337652.1:c.430T>A	p.Phe144Ile	p.F144I	ENST00000337652	NM_130803.2	144	Ttc/Atc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18274100	18274100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	63	790	0	ENST00000222254.8:c.1318G>C	p.Glu440Gln	p.E440Q	ENST00000222254	NM_005027.3	440	Gag/Cag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662564	117662564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0019636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	15	426	0	ENST00000368508.3:c.4901A>C	p.Lys1634Thr	p.K1634T	ENST00000368508	NM_002944.2	1634	aAg/aCg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662588	117662588	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	23	508	0	ENST00000368508.3:c.4877C>G	p.Ser1626Cys	p.S1626C	ENST00000368508	NM_002944.2	1626	tCt/tGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877802	151877802	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	22	286	0	ENST00000262189.6:c.7143G>C	p.Leu2381Phe	p.L2381F	ENST00000262189	NM_170606.2	2381	ttG/ttC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	218	990	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0019637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	387	1109	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0019637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	143	382	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247367	153247367	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	172	519	0	ENST00000281708.4:c.1435C>G	p.Arg479Gly	p.R479G	ENST00000281708	NM_033632.3	479	Cga/Gga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427027	49427027	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	205	678	0	ENST00000301067.7:c.11461del	p.Gln3821ArgfsTer9	p.Q3821Rfs*9	ENST00000301067	NM_003482.3	3821	Cag/ag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88727516	88727516	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	232	775	0	ENST00000360948.2:c.263G>A	p.Trp88Ter	p.W88*	ENST00000360948	NM_001012338.2	88	tGg/tAg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46602869	46602869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	348	1055	2	ENST00000263734.3:c.927G>A	p.Met309Ile	p.M309I	ENST00000263734	NM_001430.4	309	atG/atA																																																																															
APC	324	MSKCC	GRCh37	5	112162804	112162804	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0019637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	124	611	0	ENST00000257430.4:c.1412del		p.X471_splice	ENST00000257430	NM_000038.5	471																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	406	526	0	ENST00000342988.3:c.1055G>A	p.Gly352Glu	p.G352E	ENST00000342988	NM_005359.5	352	gGa/gAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0019646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	203	507	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577296	64577296	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	588	828	0	ENST00000337652.1:c.286del	p.Gln96ArgfsTer23	p.Q96Rfs*23	ENST00000337652	NM_130803.2	96	Cag/ag																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374293	138374293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	118	711	1	ENST00000289153.2:c.3151G>A	p.Glu1051Lys	p.E1051K	ENST00000289153	NM_006219.2	1051	Gaa/Aaa																																																																															
NF1	4763	MSKCC	GRCh37	17	29576091	29576091	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0019647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	124	739	0	ENST00000358273.4:c.4064C>G	p.Ser1355Ter	p.S1355*	ENST00000358273	NM_001042492.2	1355	tCa/tGa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17125934	17125934	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	51	767	0	ENST00000285071.4:c.660G>C	p.Gln220His	p.Q220H	ENST00000285071	NM_144997.5	220	caG/caC																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32181898	32181898	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	126	796	0	ENST00000375023.3:c.2156C>G	p.Thr719Arg	p.T719R	ENST00000375023	NM_004557.3	719	aCa/aGa																																																																															
NBN	4683	MSKCC	GRCh37	8	90976716	90976716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	116	589	0	ENST00000265433.3:c.916C>T	p.Pro306Ser	p.P306S	ENST00000265433	NM_002485.4	306	Cct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0019656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	125	895	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578505	7578505	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	601	1213	0	ENST00000269305.4:c.425delC	p.Pro142LeufsTer28	p.P142Lfs*28	ENST00000269305	NM_001126112.2	142	cCt/ct																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479720	67479720	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	164	628	0	ENST00000327367.4:c.1027T>C	p.Phe343Leu	p.F343L	ENST00000327367	NM_005902.3	343	Ttc/Ctc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0019661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	128	800	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469551	25469551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	36	810	0	ENST00000264709.3:c.1217T>C	p.Met406Thr	p.M406T	ENST00000264709	NM_175629.2	406	aTg/aCg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117622216	117622216	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	21	683	0	ENST00000368508.3:c.6654C>G	p.Phe2218Leu	p.F2218L	ENST00000368508	NM_002944.2	2218	ttC/ttG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249013	55249014	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACCCCC			P-0019676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	139	429	0	ENST00000275493.2:c.2314_2319dupCCCCAC	p.Pro772_His773dup	p.P772_H773dup	ENST00000275493	NM_005228.3	772	aac/aACCCCCac																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981607	101981607	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	66	302	0	ENST00000282441.5:c.28C>T	p.Gln10Ter	p.Q10*	ENST00000282441	NM_001130145.2	10	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	99	680	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0019681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	27	512	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0019681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	38	499	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11552822		P-0019681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	127	680	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045514	47045514	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	58	407	1	ENST00000329236.7:c.2250del	p.Glu751SerfsTer18	p.E751Sfs*18	ENST00000329236	NM_001204466.1	749	atC/at																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492882	56492908	+	inframe_deletion	In_Frame_Del	DEL	AGCCATCAGCAGCCAGGGCCAGAGGGC	AGCCATCAGCAGCCAGGGCCAGAGGGC	-			P-0019681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	52	359	0	ENST00000407977.2:c.31_57del	p.Ala11_Ala19del	p.A11_A19del	ENST00000407977		11	GCCCTCTGGCCCTGGCTGCTGATGGCT/-																																																																															
ATR	545	MSKCC	GRCh37	3	142268400	142268400	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	42	696	1	ENST00000350721.4:c.3092A>G	p.Asn1031Ser	p.N1031S	ENST00000350721	NM_001184.3	1031	aAc/aGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	158	688	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1222987	1222987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	49	697	1	ENST00000326873.7:c.924G>T	p.Trp308Cys	p.W308C	ENST00000326873	NM_000455.4	308	tgG/tgT																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682363	37682363	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	36	646	0	ENST00000447079.4:c.3554C>G	p.Ala1185Gly	p.A1185G	ENST00000447079	NM_015083.1	1185	gCc/gGc																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43748545	43748545	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	67	711	0	ENST00000523873.1:c.499G>T	p.Val167Phe	p.V167F	ENST00000523873		167	Gtt/Ttt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411558	63411558	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	114	538	0	ENST00000330258.3:c.1609G>C	p.Asp537His	p.D537H	ENST00000330258	NM_152424.3	537	Gac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0019685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	194	705	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175182	112175182	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	166	292	0	ENST00000257430.4:c.3892del	p.Ser1298LeufsTer7	p.S1298Lfs*7	ENST00000257430	NM_000038.5	1297	gaT/ga																																																																															
ALK	238	MSKCC	GRCh37	2	30142901	30142901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	202	989	0	ENST00000389048.3:c.625C>T	p.Arg209Cys	p.R209C	ENST00000389048	NM_004304.4	209	Cgc/Tgc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946453	2946453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	162	720	2	ENST00000396946.4:c.3284C>T	p.Thr1095Met	p.T1095M	ENST00000396946	NM_032415.4	1095	aCg/aTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508398	106508398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	48	212	1	ENST00000359195.3:c.392G>T	p.Ser131Ile	p.S131I	ENST00000359195	NM_002649.2	131	aGc/aTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398278	25398282	+	missense_variant	Missense_Mutation	ONP	ACGCC	ACGCC	CCGCA			P-0019685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	183	718	0	ENST00000256078.4:c.37_41delinsTGCGG	p.Gly13_Val14delinsCysGly	p.G13_V14delinsCG	ENST00000256078	NM_033360.2	13	GGCGTa/TGCGGa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11307893	11307893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	28	811	0	ENST00000361445.4:c.1099G>A	p.Glu367Lys	p.E367K	ENST00000361445	NM_004958.3	367	Gag/Aag																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46736438	46736438	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	188	665	2	ENST00000371975.4:c.1150C>G	p.Leu384Val	p.L384V	ENST00000371975	NM_003579.3	384	Ctc/Gtc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982421	201982421	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	327	1133	3	ENST00000359651.3:c.800A>G	p.Lys267Arg	p.K267R	ENST00000359651		267	aAg/aGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579363	7579364	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0019686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	1035	913	7	ENST00000269305.4:c.322_323dup	p.Phe109ValfsTer15	p.F109Vfs*15	ENST00000269305	NM_001126112.2	108	ggt/ggGGt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55153693	55153693	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	182	633	2	ENST00000257290.5:c.2659G>T	p.Glu887Ter	p.E887*	ENST00000257290	NM_006206.4	887	Gag/Tag																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599122	28599122	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	99	1066	0	ENST00000253063.3:c.568T>C	p.Ser190Pro	p.S190P	ENST00000253063	NM_031459.4	190	Tcc/Ccc																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031919	26031919	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	65	409	0	ENST00000244661.2:c.370G>C	p.Asp124His	p.D124H	ENST00000244661	NM_003537.3	124	Gac/Cac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	49	1189	2	ENST00000250448.2:c.655C>T	p.Arg219Cys	p.R219C	ENST00000250448	NM_004496.3	219	Cgc/Tgc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37872045	37872045	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200497646		P-0019695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	55	1259	0	ENST00000269571.5:c.1366C>T	p.Arg456Cys	p.R456C	ENST00000269571		456	Cgc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0019696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	244	697	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0019696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	408	781	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0019696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	542	681	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
STK40	83931	MSKCC	GRCh37	1	36820012	36820013	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	134	723	0	ENST00000373129.3:c.575dup	p.Asn192LysfsTer65	p.N192Kfs*65	ENST00000373129	NM_032017.1	192	aat/aaAt																																																																															
MSI1	4440	MSKCC	GRCh37	12	120791129	120791129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	173	952	0	ENST00000257552.2:c.706G>A	p.Ala236Thr	p.A236T	ENST00000257552	NM_002442.3	236	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	168	810	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	19	1015	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483916	88483916	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	66	920	1	ENST00000360948.2:c.1654G>T	p.Val552Phe	p.V552F	ENST00000360948	NM_001012338.2	552	Gtc/Ttc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998684	100998685	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	121	1339	1	ENST00000325455.5:c.1117_1118delinsAA	p.Ala373Lys	p.A373K	ENST00000325455	NM_001202474.3	373	GCg/AAg																																																																															
ATM	472	MSKCC	GRCh37	11	108186743	108186743	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	66	697	0	ENST00000278616.4:c.6101G>C	p.Arg2034Pro	p.R2034P	ENST00000278616	NM_000051.3	2034	cGa/cCa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900750	32900750	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	90	601	0	ENST00000380152.3:c.631G>T	p.Val211Phe	p.V211F	ENST00000380152		211	Gtc/Ttc																																																																															
MGA	23269	MSKCC	GRCh37	15	41988957	41988957	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	116	878	0	ENST00000219905.7:c.1751del	p.Gly584AlafsTer16	p.G584Afs*16	ENST00000219905	NM_001164273.1	583	ttG/tt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554705	63554705	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	83	527	0	ENST00000307078.5:c.34G>T	p.Asp12Tyr	p.D12Y	ENST00000307078	NM_004655.3	12	Gac/Tac																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905055	50905055	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	56	729	2	ENST00000440232.2:c.337G>T	p.Gly113Trp	p.G113W	ENST00000440232	NM_002691.3	113	Ggg/Tgg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662617	227662617	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	35	628	0	ENST00000305123.5:c.838A>G	p.Ile280Val	p.I280V	ENST00000305123	NM_005544.2	280	Atc/Gtc																																																																															
SRC	6714	MSKCC	GRCh37	20	36012603	36012603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	30	762	0	ENST00000358208.4:c.47G>T	p.Arg16Leu	p.R16L	ENST00000358208		16	cGc/cTc																																																																															
KIT	3815	MSKCC	GRCh37	4	55589831	55589831	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	88	608	0	ENST00000288135.5:c.1313T>G	p.Ile438Arg	p.I438R	ENST00000288135	NM_000222.2	438	aTa/aGa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361262	66361262	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	27	346	0	ENST00000273854.3:c.911-1G>A		p.X304_splice	ENST00000273854	NM_004439.5	304																																																																																
INPP4B	8821	MSKCC	GRCh37	4	143181675	143181675	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	104	860	0	ENST00000262992.4:c.658G>C	p.Gly220Arg	p.G220R	ENST00000262992	NM_001101669.1	220	Gga/Cga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629556	187629556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	116	826	0	ENST00000441802.2:c.1426G>T	p.Val476Leu	p.V476L	ENST00000441802	NM_005245.3	476	Gtg/Ttg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98218640	98218640	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	93	661	0	ENST00000331920.6:c.3224G>T	p.Gly1075Val	p.G1075V	ENST00000331920	NM_000264.3	1075	gGa/gTa																																																																															
ATRX	546	MSKCC	GRCh37	X	76855028	76855028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	63	744	1	ENST00000373344.5:c.5808G>T	p.Lys1936Asn	p.K1936N	ENST00000373344	NM_000489.3	1936	aaG/aaT																																																																															
ATRX	546	MSKCC	GRCh37	X	76938796	76938796	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	89	887	0	ENST00000373344.5:c.1952C>G	p.Ser651Cys	p.S651C	ENST00000373344	NM_000489.3	651	tCt/tGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023909	27023923	+	inframe_deletion	In_Frame_Del	DEL	GCTGCGGCGGCGGCA	GCTGCGGCGGCGGCA	-	rs751352361		P-0019709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	22	204	0	ENST00000324856.7:c.1029_1043del	p.Ala345_Ala349del	p.A345_A349del	ENST00000324856	NM_006015.4	339	GCTGCGGCGGCGGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578217	7578217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	228	825	0	ENST00000269305.4:c.632C>T	p.Thr211Ile	p.T211I	ENST00000269305	NM_001126112.2	211	aCt/aTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11106928	11106928	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0019709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	259	953	1	ENST00000344626.4:c.1633A>T	p.Lys545Ter	p.K545*	ENST00000344626	NM_003072.3	545	Aag/Tag																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790791	89790791	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	250	919	0	ENST00000336032.3:c.178T>G	p.Phe60Val	p.F60V	ENST00000336032	NM_006813.2	60	Ttc/Gtc																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0019711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	83	369	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	93	583	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0019711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	173	806	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943806	9943806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	102	439	0	ENST00000330684.3:c.1135G>A	p.Glu379Lys	p.E379K	ENST00000330684	NM_001134407.1	379	Gag/Aag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	196	762	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953214	81953214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	100	457	0	ENST00000359376.3:c.2180G>A	p.Arg727Gln	p.R727Q	ENST00000359376	NM_002661.3	727	cGa/cAa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016634	12016634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	80	521	0	ENST00000353533.5:c.770C>T	p.Ser257Phe	p.S257F	ENST00000353533	NM_003010.3	257	tCt/tTt																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650377	48650377	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	119	1040	0	ENST00000376670.3:c.347C>G	p.Ser116Cys	p.S116C	ENST00000376670	NM_002049.3	116	tCt/tGt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2202742	2202742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	585	840	0	ENST00000398665.3:c.751C>T	p.His251Tyr	p.H251Y	ENST00000398665	NM_032482.2	251	Cac/Tac																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127446	55127446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	89	893	0	ENST00000257290.5:c.234C>A	p.Ser78Arg	p.S78R	ENST00000257290	NM_006206.4	78	agC/agA																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39325172	39325173	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCTGCC			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1871	429	1095	1	ENST00000373001.3:c.141_146dup	p.Ala48_Gly49dup	p.A48_G49dup	ENST00000373001	NM_022157.3	48	ggc/ggGGCAGGc																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514178	69514178	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	168	819	0	ENST00000294312.3:c.503T>A	p.Met168Lys	p.M168K	ENST00000294312	NM_005117.2	168	aTg/aAg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355083	73355083	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	132	684	0	ENST00000377767.4:c.287A>G	p.Gln96Arg	p.Q96R	ENST00000377767	NM_014953.3	96	cAa/cGa																																																																															
AKT2	208	MSKCC	GRCh37	19	40742005	40742005	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	261	905	0	ENST00000392038.2:c.967G>C	p.Glu323Gln	p.E323Q	ENST00000392038	NM_001626.4	323	Gag/Cag																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281889	39281889	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	96	693	0	ENST00000402219.2:c.586T>A	p.Ser196Thr	p.S196T	ENST00000402219	NM_005633.3	196	Tca/Aca																																																																															
EP300	2033	MSKCC	GRCh37	22	41547924	41547924	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	86	763	0	ENST00000263253.7:c.2905G>T	p.Glu969Ter	p.E969*	ENST00000263253	NM_001429.3	969	Gag/Tag																																																																															
EP300	2033	MSKCC	GRCh37	22	41547954	41547954	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	94	823	0	ENST00000263253.7:c.2935G>C	p.Glu979Gln	p.E979Q	ENST00000263253	NM_001429.3	979	Gag/Cag																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185169125	185169125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	123	674	0	ENST00000265026.3:c.1220T>C	p.Leu407Ser	p.L407S	ENST00000265026	NM_004721.4	407	tTa/tCa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526719	31526719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2274	192	1197	0	ENST00000344624.3:c.321G>A	p.Met107Ile	p.M107I	ENST00000344624		107	atG/atA																																																																															
RXRA	6256	MSKCC	GRCh37	9	137313613	137313613	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	570	1051	0	ENST00000481739.1:c.872A>G	p.Glu291Gly	p.E291G	ENST00000481739	NM_002957.4	291	gAg/gGg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53239595	53239595	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	113	288	0	ENST00000375401.3:c.1746+1G>T		p.X582_splice	ENST00000375401	NM_004187.3	582																																																																																
CCNQ	92002	MSKCC	GRCh37	X	152864444	152864759	+	upstream_gene_variant	5'Flank	DEL	CTCGGAAGTGCACCCTGGCTTCGGGCGCCGGCTGCCCTCCGGGCCCCGCGCTGCAGGCCCCCCTCCGCCGCCTCCGGGGCTTCCATGAGGCGCCGCGGCACCGGCGGAAGGAGAGGCGGCCCCGGCGCGCAGAAGCCGGCAGAACTGGAGGTGCTCGCGGCGGGCGTGCCGCCCCACCCGGCCGCGTCCGGCCCCGCCCCGCCCCGCCCCTCGCCGCCCCGCCCCGCCCCTCGCCGCCCCGCCCCGCCCCTCGCCGCCCCGCCGCTCCTCCGCCCCGCCCCGCCCCTCAGGGCCCTCGCCCAAGGGTGAGCGCGCG	CTCGGAAGTGCACCCTGGCTTCGGGCGCCGGCTGCCCTCCGGGCCCCGCGCTGCAGGCCCCCCTCCGCCGCCTCCGGGGCTTCCATGAGGCGCCGCGGCACCGGCGGAAGGAGAGGCGGCCCCGGCGCGCAGAAGCCGGCAGAACTGGAGGTGCTCGCGGCGGGCGTGCCGCCCCACCCGGCCGCGTCCGGCCCCGCCCCGCCCCGCCCCTCGCCGCCCCGCCCCGCCCCTCGCCGCCCCGCCCCGCCCCTCGCCGCCCCGCCGCTCCTCCGCCCCGCCCCGCCCCTCAGGGCCCTCGCCCAAGGGTGAGCGCGCG	-			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	100	68	0				ENST00000569906																																																																																		
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0019716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	151	756	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151849798	151849888	+	frameshift_variant	Frame_Shift_Del	DEL	GTTGGAGGAAATGGTACATTAGGCTGCTTCAGCCGGTAAGAGCTCACTAATCTGGGAGGGTTTGCAGATCCTGGCGGAGGCCCACGGAGAA	GTTGGAGGAAATGGTACATTAGGCTGCTTCAGCCGGTAAGAGCTCACTAATCTGGGAGGGTTTGCAGATCCTGGCGGAGGCCCACGGAGAA	-			P-0019716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	26	315	0	ENST00000262189.6:c.12428_12518del	p.Leu4143GlnfsTer45	p.L4143Qfs*45	ENST00000262189	NM_170606.2	4143	cTTCTCCGTGGGCCTCCGCCAGGATCTGCAAACCCTCCCAGATTAGTGAGCTCTTACCGGCTGAAGCAGCCTAATGTACCATTTCCTCCAACa/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	117	612	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9984844	9984844	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0019724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	59	453	0	ENST00000330684.3:c.1121A>T	p.Lys374Met	p.K374M	ENST00000330684	NM_001134407.1	374	aAg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0019724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	74	451	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
ARID2	196528	MSKCC	GRCh37	12	46244255	46244255	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	57	345	0	ENST00000334344.6:c.2351del	p.Pro784LeufsTer8	p.P784Lfs*8	ENST00000334344	NM_152641.2	783	atC/at																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424512	49424512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	115	755	3	ENST00000301067.7:c.13711G>A	p.Ala4571Thr	p.A4571T	ENST00000301067	NM_003482.3	4571	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0019726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	247	800	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0019726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	116	453	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0019726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	113	503	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845465	151845465	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0019726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	169	682	0	ENST00000262189.6:c.13547T>G	p.Leu4516Ter	p.L4516*	ENST00000262189	NM_170606.2	4516	tTa/tGa																																																																															
ARAF	369	MSKCC	GRCh37	X	47426121	47426121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	25	1136	0	ENST00000377045.4:c.641C>T	p.Ser214Phe	p.S214F	ENST00000377045	NM_001654.4	214	tCc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	43	690	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0019735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	59	645	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577567	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	58	641	0	ENST00000269305.4:c.714dup	p.Asn239Ter	p.N239*	ENST00000269305	NM_001126112.2	238	-/T																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67358698	67358698	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0019735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	26	484	0	ENST00000327367.4:c.206G>T	p.Arg69Met	p.R69M	ENST00000327367	NM_005902.3	69	aGg/aTg																																																																															
AR	367	MSKCC	GRCh37	X	66766603	66766603	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	67	468	0	ENST00000374690.3:c.1615C>T	p.Arg539Cys	p.R539C	ENST00000374690	NM_000044.3	539	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0019737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	101	756	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0019737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	178	609	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	63	493	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391761	139391761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	64	765	0	ENST00000277541.6:c.6430G>A	p.Gly2144Ser	p.G2144S	ENST00000277541	NM_017617.3	2144	Ggc/Agc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118888	70118888	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	322	801	0	ENST00000245479.2:c.460T>G	p.Phe154Val	p.F154V	ENST00000245479	NM_000346.3	154	Ttc/Gtc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55224469	55224471	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0019737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	94	700	0	ENST00000275493.2:c.1157_1159del	p.Pro386del	p.P386del	ENST00000275493	NM_005228.3	384	aCTCct/act																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782144		P-0019752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	341	877	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99185071	99185072	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0019752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	64	535	0	ENST00000074304.5:c.2476_2477del	p.Ser826PhefsTer9	p.S826Ffs*9	ENST00000074304	NM_001134224.1	825	GAg/g																																																																															
EGFR	1956	MSKCC	GRCh37	7	55231463	55231463	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	251	652	0	ENST00000275493.2:c.1669C>T	p.Gln557Ter	p.Q557*	ENST00000275493	NM_005228.3	557	Cag/Tag																																																																															
SMO	6608	MSKCC	GRCh37	7	128850823	128850823	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	252	816	0	ENST00000249373.3:c.1670A>C	p.Asp557Ala	p.D557A	ENST00000249373	NM_005631.4	557	gAc/gCc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223685	53223685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	277	1017	0	ENST00000375401.3:c.3674C>A	p.Pro1225His	p.P1225H	ENST00000375401	NM_004187.3	1225	cCc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	146	416	2	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575550	64575550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	228	688	0	ENST00000337652.1:c.482G>T	p.Gly161Val	p.G161V	ENST00000337652	NM_130803.2	161	gGt/gTt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67569832	67569832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	118	418	0	ENST00000274335.5:c.493C>T	p.Leu165Phe	p.L165F	ENST00000274335		165	Ctt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0019755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	73	949	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	120	807	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0019758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	123	780	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																															
CDH1	999	MSKCC	GRCh37	16	68849591	68849592	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	108	663	0	ENST00000261769.5:c.1497dup	p.Gly500TrpfsTer37	p.G500Wfs*37	ENST00000261769	NM_004360.3	498	-/T																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112892398	112892398	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143433437		P-0019758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	110	656	1	ENST00000351677.2:c.556C>T	p.Arg186Trp	p.R186W	ENST00000351677	NM_002834.3	186	Cgg/Tgg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71161782	71161782	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	30	217	0	ENST00000318789.4:c.187C>T	p.Gln63Ter	p.Q63*	ENST00000318789	NM_032682.5	63	Cag/Tag																																																																															
TET2	54790	MSKCC	GRCh37	4	106157663	106157663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	62	374	0	ENST00000380013.4:c.2564C>T	p.Ala855Val	p.A855V	ENST00000380013	NM_001127208.2	855	gCa/gTa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44937744	44937744	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0019758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	103	590	0	ENST00000377967.4:c.2932A>T	p.Lys978Ter	p.K978*	ENST00000377967	NM_021140.2	978	Aag/Tag																																																																															
AR	367	MSKCC	GRCh37	X	66905889	66905889	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	71	501	0	ENST00000374690.3:c.1806C>A	p.Cys602Ter	p.C602*	ENST00000374690	NM_000044.3	602	tgC/tgA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	164	432	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347581	89347581	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	28	604	0	ENST00000301030.4:c.5369C>A	p.Ser1790Ter	p.S1790*	ENST00000301030	NM_001256183.1	1790	tCg/tAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593558	48593558	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0019759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	17	185	1	ENST00000342988.3:c.1308+1G>T		p.X436_splice	ENST00000342988	NM_005359.5	436																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118370564	118370564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	18	464	1	ENST00000534358.1:c.6094G>A	p.Asp2032Asn	p.D2032N	ENST00000534358	NM_005933.3	2032	Gac/Aac																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202322	138202322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	11	576	0	ENST00000237289.4:c.2239G>A	p.Ala747Thr	p.A747T	ENST00000237289	NM_001270507.1	747	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	215	764	0	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257950	16257950	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	165	507	0	ENST00000375759.3:c.5218del	p.Ala1740ProfsTer10	p.A1740Pfs*10	ENST00000375759	NM_015001.2	1739	Ggg/gg																																																																															
ATM	472	MSKCC	GRCh37	11	108225590	108225590	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	120	686	0	ENST00000278616.4:c.8839A>G	p.Thr2947Ala	p.T2947A	ENST00000278616	NM_000051.3	2947	Acc/Gcc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934105	39934105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	115	856	1	ENST00000378444.4:c.494C>T	p.Ala165Val	p.A165V	ENST00000378444	NM_001123385.1	165	gCg/gTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600464	10600464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	525	847	0	ENST00000171111.5:c.1391G>T	p.Gly464Val	p.G464V	ENST00000171111	NM_203500.1	464	gGc/gTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974799	21974799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	66	201	0	ENST00000304494.5:c.28G>T	p.Glu10Ter	p.E10*	ENST00000304494	NM_000077.4	10	Gag/Tag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47677765	47677765	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	56	569	1	ENST00000347630.2:c.1100del	p.Pro367HisfsTer5	p.P367Hfs*5	ENST00000347630	NM_001007230.1	367	cCa/ca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258581	16258581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	314	609	0	ENST00000375759.3:c.5846G>T	p.Arg1949Leu	p.R1949L	ENST00000375759	NM_015001.2	1949	cGg/cTg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731181	162731181	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	227	404	0	ENST00000367921.3:c.1036A>T	p.Ile346Phe	p.I346F	ENST00000367921	NM_006182.2	346	Atc/Ttc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944122	71944122	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	559	688	0	ENST00000298229.2:c.1955A>T	p.Glu652Val	p.E652V	ENST00000298229	NM_001567.3	652	gAg/gTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117430	115117430	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0019765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	145	533	0	ENST00000257566.3:c.744C>G	p.Tyr248Ter	p.Y248*	ENST00000257566	NM_016569.3	248	taC/taG																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99478604	99478604	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	228	544	0	ENST00000268035.6:c.3246G>T	p.Met1082Ile	p.M1082I	ENST00000268035	NM_000875.3	1082	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577542	7577561	+	frameshift_variant	Frame_Shift_Del	DEL	TCATGCCGCCCATGCAGGAA	TCATGCCGCCCATGCAGGAA	-			P-0019765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	104	736	0	ENST00000269305.4:c.720_739del	p.Ser240ArgfsTer17	p.S240Rfs*17	ENST00000269305	NM_001126112.2	240	agTTCCTGCATGGGCGGCATGAac/agac																																																																															
YES1	7525	MSKCC	GRCh37	18	739749	739749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	664	796	1	ENST00000314574.4:c.1123G>A	p.Asp375Asn	p.D375N	ENST00000314574	NM_005433.3	375	Gat/Aat																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288740	15288741	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0019765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	119	163	1	ENST00000263388.2:c.3998_3999delinsTT	p.Gly1333Val	p.G1333V	ENST00000263388	NM_000435.2	1333	gGG/gTT																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379718	17379718	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	493	994	0	ENST00000359435.4:c.103G>T	p.Glu35Ter	p.E35*	ENST00000359435	NM_001033549.1	35	Gag/Tag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36217207	36217207	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1309	74	930	0	ENST00000222270.7:c.3956C>G	p.Ser1319Cys	p.S1319C	ENST00000222270	NM_014727.1	1319	tCt/tGt																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128047393	128047393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	102	434	0	ENST00000285398.2:c.529G>T	p.Val177Phe	p.V177F	ENST00000285398	NM_000122.1	177	Gtt/Ttt																																																																															
ERG	2078	MSKCC	GRCh37	21	39772532	39772532	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	188	591	0	ENST00000288319.7:c.709T>C	p.Tyr237His	p.Y237H	ENST00000288319	NM_182918.3	237	Tat/Cat																																																																															
RAC2	5880	MSKCC	GRCh37	22	37622769	37622769	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	404	907	0	ENST00000249071.6:c.523G>T	p.Ala175Ser	p.A175S	ENST00000249071	NM_002872.4	175	Gcc/Tcc																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182683507	182683507	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	55	690	0	ENST00000292782.4:c.38G>T	p.Arg13Leu	p.R13L	ENST00000292782	NM_020640.2	13	cGt/cTt																																																																															
KDR	3791	MSKCC	GRCh37	4	55946270	55946270	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	206	349	0	ENST00000263923.4:c.3909C>G	p.Ser1303Arg	p.S1303R	ENST00000263923	NM_002253.2	1303	agC/agG																																																																															
NPM1	4869	MSKCC	GRCh37	5	170818363	170818363	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs11551576		P-0019765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	136	484	0	ENST00000296930.5:c.193A>G	p.Met65Val	p.M65V	ENST00000296930	NM_002520.6	65	Atg/Gtg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976825	2976825	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	128	802	0	ENST00000396946.4:c.1187G>T	p.Cys396Phe	p.C396F	ENST00000396946	NM_032415.4	396	tGc/tTc																																																																															
HGF	3082	MSKCC	GRCh37	7	81381516	81381516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	143	369	0	ENST00000222390.5:c.545G>T	p.Gly182Val	p.G182V	ENST00000222390	NM_000601.4	182	gGg/gTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319966	8319966	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0019765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	37	219	0	ENST00000356435.5:c.5535C>A	p.Ser1845Arg	p.S1845R	ENST00000356435		1845	agC/agA																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650616	48650617	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0019765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	63	739	0	ENST00000376670.3:c.586_587delinsAA	p.Leu196Lys	p.L196K	ENST00000376670	NM_002049.3	196	CTg/AAg																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652384	48652384	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	81	982	2	ENST00000376670.3:c.1055G>T	p.Gly352Val	p.G352V	ENST00000376670	NM_002049.3	352	gGc/gTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0019772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	409	928	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0019772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	196	749	1	ENST00000269305.4:c.673-2A>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
ARID2	196528	MSKCC	GRCh37	12	46243969	46243969	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	63	749	0	ENST00000334344.6:c.2063C>G	p.Pro688Arg	p.P688R	ENST00000334344	NM_152641.2	688	cCt/cGt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99442738	99442738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	51	911	0	ENST00000268035.6:c.1135G>A	p.Gly379Arg	p.G379R	ENST00000268035	NM_000875.3	379	Ggg/Agg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46252756	46252756	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	65	749	0	ENST00000371998.3:c.185T>C	p.Phe62Ser	p.F62S	ENST00000371998		62	tTc/tCc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557316	187557330	+	inframe_deletion	In_Frame_Del	DEL	GGCTTGGAGATCCAT	GGCTTGGAGATCCAT	-			P-0019772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	34	751	0	ENST00000441802.2:c.4032_4046del	p.Glu1344_Pro1349delinsAsp	p.E1344_P1349delinsD	ENST00000441802	NM_005245.3	1344	gaATGGATCTCCAAGCCc/gac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	147	408	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0019773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	144	646	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918843	50918843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	74	791	0	ENST00000440232.2:c.2713G>A	p.Glu905Lys	p.E905K	ENST00000440232	NM_002691.3	905	Gag/Aag																																																																															
MED12	9968	MSKCC	GRCh37	X	70346960	70346960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	81	449	0	ENST00000374080.3:c.2827C>A	p.Gln943Lys	p.Q943K	ENST00000374080		943	Cag/Aag																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111907691	111907693	+	missense_variant	Missense_Mutation	ONP	TGG	TGG	CGA			P-0019773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	66	499	0	ENST00000393256.3:c.465_467delinsCGA	p.Gly156Glu	p.G156E	ENST00000393256	NM_006538.4	155	atTGGa/atCGAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	67	918	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0019779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1759	42	1551	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0019781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	146	1229	4	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
ALK	238	MSKCC	GRCh37	2	29416431	29416431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	99	1082	0	ENST00000389048.3:c.4522G>A	p.Gly1508Ser	p.G1508S	ENST00000389048	NM_004304.4	1508	Ggc/Agc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431667	49431667	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	63	1081	2	ENST00000301067.7:c.9472C>T	p.Gln3158Ter	p.Q3158*	ENST00000301067	NM_003482.3	3158	Cag/Tag																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876226	35876226	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	86	876	0	ENST00000303115.3:c.1018C>G	p.Leu340Val	p.L340V	ENST00000303115	NM_002185.3	340	Ctt/Gtt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261077	16261077	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	96	776	0	ENST00000375759.3:c.8345del	p.Asn2782ThrfsTer11	p.N2782Tfs*11	ENST00000375759	NM_015001.2	2781	gAa/ga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929426	32929426	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0019782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	170	772	0	ENST00000380152.3:c.7435+1G>A		p.X2479_splice	ENST00000380152		2479																																																																																
TP53	7157	MSKCC	GRCh37	17	7578497	7578497	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	232	1345	0	ENST00000269305.4:c.433del	p.Leu145CysfsTer25	p.L145Cfs*25	ENST00000269305	NM_001126112.2	145	Ctg/tg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7983243	7983243	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	39	738	0	ENST00000319144.4:c.771C>G	p.His257Gln	p.H257Q	ENST00000319144	NM_001139.2	257	caC/caG																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805940	46805940	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	64	496	0	ENST00000290295.7:c.16T>C	p.Tyr6His	p.Y6H	ENST00000290295	NM_006361.5	6	Tat/Cat																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17389808	17389808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	80	1312	0	ENST00000359435.4:c.941G>A	p.Ser314Asn	p.S314N	ENST00000359435	NM_001033549.1	314	aGc/aAc																																																																															
AKT2	208	MSKCC	GRCh37	19	40744822	40744822	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	85	976	0	ENST00000392038.2:c.698A>G	p.Asn233Ser	p.N233S	ENST00000392038	NM_001626.4	233	aAc/aGc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518270	8518270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	20	410	2	ENST00000356435.5:c.1121C>T	p.Ala374Val	p.A374V	ENST00000356435		374	gCg/gTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	132	599	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11169377	11169377	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519916		P-0019784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	79	772	0	ENST00000361445.4:c.7498A>T	p.Ile2500Phe	p.I2500F	ENST00000361445	NM_004958.3	2500	Att/Ttt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115433	115115433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	164	788	0	ENST00000257566.3:c.893C>T	p.Pro298Leu	p.P298L	ENST00000257566	NM_016569.3	298	cCt/cTt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061184	38061184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	79	574	0	ENST00000250448.2:c.805G>A	p.Glu269Lys	p.E269K	ENST00000250448	NM_004496.3	269	Gag/Aag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515117	31515117	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	93	940	1	ENST00000344624.3:c.1268C>G	p.Ser423Cys	p.S423C	ENST00000344624		423	tCc/tGc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177488	56177488	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	97	449	0	ENST00000399503.3:c.2462del	p.Leu821Ter	p.L821*	ENST00000399503	NM_005921.1	821	Ttg/tg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183331	56183331	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	144	644	0	ENST00000399503.3:c.4241delC	p.Ala1414AspfsTer8	p.A1414Dfs*8	ENST00000399503	NM_005921.1	1414	gCa/ga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877878	151877878	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	AA			P-0019784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	108	431	0	ENST00000262189.6:c.7067delinsTT	p.Pro2356LeufsTer11	p.P2356Lfs*11	ENST00000262189	NM_170606.2	2356	cCt/cTTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0019785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	72	327	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0019785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	176	530	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0019785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	223	810	3	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95598926	95598926	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	155	649	2	ENST00000343455.3:c.233C>A	p.Thr78Asn	p.T78N	ENST00000343455	NM_177438.2	78	aCt/aAt																																																																															
APC	324	MSKCC	GRCh37	5	112173552	112173552	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	141	477	0	ENST00000257430.4:c.2262del	p.Arg755GlyfsTer6	p.R755Gfs*6	ENST00000257430	NM_000038.5	754	gTt/gt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449858	149449859	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	246	1068	0	ENST00000286301.3:c.1205dup	p.Glu403ArgfsTer37	p.E403Rfs*37	ENST00000286301	NM_005211.3	402	cca/ccCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579361	7579361	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	181	1059	0	ENST00000269305.4:c.326del	p.Phe109SerfsTer14	p.F109Sfs*14	ENST00000269305	NM_001126112.2	109	tTc/tc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81916944	81916944	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0019786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	66	673	0	ENST00000359376.3:c.763C>A	p.Gln255Lys	p.Q255K	ENST00000359376	NM_002661.3	255	Cag/Aag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288347	15288347	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs186300168		P-0019786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1546	218	1415	0	ENST00000263388.2:c.4392G>C	p.Glu1464Asp	p.E1464D	ENST00000263388	NM_000435.2	1464	gaG/gaC																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0019787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	295	691	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118831	115118831	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	179	586	0	ENST00000257566.3:c.510G>A	p.Trp170Ter	p.W170*	ENST00000257566	NM_016569.3	170	tgG/tgA																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645412	67645412	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	83	649	0	ENST00000264010.4:c.677A>T	p.Tyr226Phe	p.Y226F	ENST00000264010	NM_006565.3	226	tAc/tTc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67660557	67660557	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	369	876	0	ENST00000264010.4:c.1457A>C	p.Gln486Pro	p.Q486P	ENST00000264010	NM_006565.3	486	cAg/cCg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11958307	11958308	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0019787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	124	612	0	ENST00000353533.5:c.217_218del	p.Ile73ArgfsTer9	p.I73Rfs*9	ENST00000353533	NM_003010.3	73	ATa/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578396	+	inframe_deletion	In_Frame_Del	DEL	TGG	TGG	-			P-0019788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	39	640	0	ENST00000269305.4:c.534_536del	p.His179del	p.H179del	ENST00000269305	NM_001126112.2	178	caCCAt/cat																																																																															
MSH2	4436	MSKCC	GRCh37	2	47635621	47635621	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	78	730	0	ENST00000233146.2:c.293A>C	p.Tyr98Ser	p.Y98S	ENST00000233146	NM_000251.2	98	tAt/tCt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412336	139412336	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	48	798	0	ENST00000277541.6:c.1309G>T	p.Glu437Ter	p.E437*	ENST00000277541	NM_017617.3	437	Gag/Tag																																																																															
HRAS	3265	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28933406		P-0019789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	694	1119	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720805	89720808	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0019790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	33	444	0	ENST00000371953.3:c.956_959delCTTT	p.Thr319LysfsTer24	p.T319Kfs*24	ENST00000371953	NM_000314.4	319	aCTTTa/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0019790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	20	405	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654642	67654642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	293	514	0	ENST00000264010.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000264010	NM_006565.3	377	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	158	364	0	ENST00000263967.3:c.3132T>G	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaG																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0019791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	167	397	1	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27023612	27023613	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTCCGGCGC			P-0019791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	44	474	0	ENST00000324856.7:c.720_729dup	p.Ala244LeufsTer159	p.A244Lfs*159	ENST00000324856	NM_006015.4	240	ggc/gGCTCCGGCGCgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0019794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	83	861	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591104	67591115	+	inframe_deletion	In_Frame_Del	DEL	TTAAACCAGACC	TTAAACCAGACC	-			P-0019794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	119	645	0	ENST00000274335.5:c.1700_1711del	p.Lys567_Leu570del	p.K567_L570del	ENST00000274335		566	aTTAAACCAGACCtt/att																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717615	89717666	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGAC	CAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGAC	-			P-0019794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	117	629	1	ENST00000371953.3:c.641_692del	p.Gln214ProfsTer25	p.Q214Pfs*25	ENST00000371953	NM_000314.4	214	CAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACcc/cc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631165	69631165	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	80	1004	1	ENST00000334134.2:c.247G>T	p.Val83Leu	p.V83L	ENST00000334134	NM_005247.2	83	Gtg/Ttg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032538	12032539	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAAA			P-0019794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	71	615	0	ENST00000353533.5:c.975_976insAAAT	p.Pro326LysfsTer6	p.P326Kfs*6	ENST00000353533	NM_003010.3	325	cct/ccTAAAt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663069	227663069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	62	614	2	ENST00000305123.5:c.386C>T	p.Ala129Val	p.A129V	ENST00000305123	NM_005544.2	129	gCg/gTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66218787	66218787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	25	623	0	ENST00000273854.3:c.2271G>T	p.Glu757Asp	p.E757D	ENST00000273854	NM_004439.5	757	gaG/gaT																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987346	2987346	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	43	1007	0	ENST00000396946.4:c.83G>C	p.Cys28Ser	p.C28S	ENST00000396946	NM_032415.4	28	tGt/tCt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391383	139391383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	95	1136	3	ENST00000277541.6:c.6808C>T	p.Pro2270Ser	p.P2270S	ENST00000277541	NM_017617.3	2270	Cca/Tca																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0019798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	170	614	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68855921	68855921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	281	427	0	ENST00000261769.5:c.1729G>T	p.Gly577Ter	p.G577*	ENST00000261769	NM_004360.3	577	Gga/Tga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	192	629	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	112	763	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793131	33793131	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	145	713	0	ENST00000498907.2:c.190A>G	p.Ile64Val	p.I64V	ENST00000498907	NM_004364.3	64	Atc/Gtc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435918	110435918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	166	812	0	ENST00000375856.3:c.2483C>T	p.Ser828Phe	p.S828F	ENST00000375856	NM_003749.2	828	tCc/tTc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226308	2226308	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	161	898	0	ENST00000326181.6:c.1921C>G	p.Arg641Gly	p.R641G	ENST00000326181	NM_032271.2	641	Cgt/Ggt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259079	89259079	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	57	418	3	ENST00000336596.2:c.223G>T	p.Asp75Tyr	p.D75Y	ENST00000336596	NM_005233.5	75	Gac/Tac																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670870	134670870	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	70	403	0	ENST00000398015.3:c.781C>G	p.Pro261Ala	p.P261A	ENST00000398015	NM_004441.4	261	Cct/Gct																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250607	26250607	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	88	487	3	ENST00000446824.2:c.227C>A	p.Ala76Glu	p.A76E	ENST00000446824	NM_021018.2	76	gCg/gAg																																																																															
STK19	8859	MSKCC	GRCh37	6	31940102	31940102	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	173	948	0	ENST00000375331.2:c.244C>G	p.Arg82Gly	p.R82G	ENST00000375331	NM_004197.1	82	Cgt/Ggt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0019805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	170	873	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0019805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	153	840	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242494	55242494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	151	733	0	ENST00000275493.2:c.2264C>G	p.Ala755Gly	p.A755G	ENST00000275493	NM_005228.3	755	gCc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0019805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	268	695	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
CDK8	1024	MSKCC	GRCh37	13	26974650	26974650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	320	879	1	ENST00000381527.3:c.994G>A	p.Asp332Asn	p.D332N	ENST00000381527	NM_001260.1	332	Gac/Aac																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68292188	68292188	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	105	477	0	ENST00000487270.1:c.92T>C	p.Leu31Ser	p.L31S	ENST00000487270	NM_133509.3	31	tTa/tCa																																																																															
HGF	3082	MSKCC	GRCh37	7	81336639	81336639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	391	722	0	ENST00000222390.5:c.1583G>A	p.Trp528Ter	p.W528*	ENST00000222390	NM_000601.4	528	tGg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112174783	112174783	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	81	455	0	ENST00000257430.4:c.3495del	p.Lys1165AsnfsTer17	p.K1165Nfs*17	ENST00000257430	NM_000038.5	1164	atA/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7579484	7579484	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	140	830	0	ENST00000269305.4:c.203del	p.Glu68GlyfsTer55	p.E68Gfs*55	ENST00000269305	NM_001126112.2	68	gAg/gg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40500453	40500453	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	64	632	0	ENST00000264657.5:c.82A>G	p.Met28Val	p.M28V	ENST00000264657	NM_139276.2	28	Atg/Gtg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440934	56440934	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	63	912	0	ENST00000407977.2:c.403A>T	p.Ser135Cys	p.S135C	ENST00000407977		135	Agt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575117	48575117	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	95	500	0	ENST00000342988.3:c.311T>G	p.Leu104Arg	p.L104R	ENST00000342988	NM_005359.5	104	cTt/cGt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251888	153251888	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	26	542	0	ENST00000281708.4:c.1118del	p.Pro373LeufsTer4	p.P373Lfs*4	ENST00000281708	NM_033632.3	373	cCt/ct																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739097	145739097	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	105	576	0	ENST00000428558.2:c.2059-1G>A		p.X687_splice	ENST00000428558	NM_004260.3	687																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	202	565	0				ENST00000310581	NM_198253.2																																																																																	
APC	324	MSKCC	GRCh37	5	112170814	112170815	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GATATTACGGAATGTGTCCAGCTTGATA			P-0019807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			589	164	649	0	ENST00000257430.4:c.1912_1939dup	p.Ala647AspfsTer13	p.A647Dfs*13	ENST00000257430	NM_000038.5	637	ggg/ggGATATTACGGAATGTGTCCAGCTTGATAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	203	589	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0019808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	239	639	2	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155725	56155726	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0019808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	249	513	0	ENST00000399503.3:c.819_820delAG	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	273	AGa/a																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121913482		P-0019808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	8	629	0	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178622	56178622	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	434	388	0	ENST00000399503.3:c.3595C>T	p.Gln1199Ter	p.Q1199*	ENST00000399503	NM_005921.1	1199	Cag/Tag																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867502	45867502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	261	918	0	ENST00000391945.4:c.806C>T	p.Thr269Met	p.T269M	ENST00000391945	NM_000400.3	269	aCg/aTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832320	72832320	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	162	608	1	ENST00000268489.5:c.4261C>T	p.Gln1421Ter	p.Q1421*	ENST00000268489	NM_006885.3	1421	Cag/Tag																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78921038	78921038	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	139	807	0	ENST00000306801.3:c.3152G>A	p.Trp1051Ter	p.W1051*	ENST00000306801	NM_020761.2	1051	tGg/tAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	163	741	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913476		P-0019810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	27	756	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902181	50902181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	155	878	0	ENST00000440232.2:c.73G>A	p.Asp25Asn	p.D25N	ENST00000440232	NM_002691.3	25	Gat/Aat																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781914	9781920	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	AGCAGGT	AGCAGGT	-			P-0019810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	57	667	0	ENST00000377346.4:c.2051_2055+2del		p.X684_splice	ENST00000377346	NM_005026.3	684																																																																																
PRKD1	5587	MSKCC	GRCh37	14	30135349	30135349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	71	717	0	ENST00000331968.5:c.469C>T	p.Pro157Ser	p.P157S	ENST00000331968	NM_002742.2	157	Cca/Tca																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984834	11984835	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	138	641	0	ENST00000353533.5:c.382dup	p.Met128AsnfsTer4	p.M128Nfs*4	ENST00000353533	NM_003010.3	127	ata/atAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29586148	29586148	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0019810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	97	538	0	ENST00000358273.4:c.4430+1G>C		p.X1477_splice	ENST00000358273	NM_001042492.2	1477																																																																																
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519991		P-0019813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	378	695	0	ENST00000269305.4:c.536A>C	p.His179Pro	p.H179P	ENST00000269305	NM_001126112.2	179	cAt/cCt																																																																															
NF1	4763	MSKCC	GRCh37	17	29586046	29586059	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTAGATACTTCAGA	GTAGATACTTCAGA	-			P-0019813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	221	402	1	ENST00000358273.4:c.4333-1_4345del		p.X1445_splice	ENST00000358273	NM_001042492.2	1445																																																																																
IDH1	3417	MSKCC	GRCh37	2	209113377	209113377	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	85	301	0	ENST00000345146.2:c.130T>G	p.Leu44Val	p.L44V	ENST00000345146	NM_005896.2	44	Tta/Gta																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542337	187542338	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0019813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	185	357	0	ENST00000441802.2:c.5402_5403del	p.Lys1801ArgfsTer12	p.K1801Rfs*12	ENST00000441802	NM_005245.3	1801	aAA/a																																																																															
MSH3	4437	MSKCC	GRCh37	5	80064770	80064771	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	488	763	0	ENST00000265081.6:c.2206dup	p.Ile736AsnfsTer32	p.I736Nfs*32	ENST00000265081	NM_002439.4	734	cga/cgAa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86659287	86659290	+	frameshift_variant	Frame_Shift_Del	DEL	TCTG	TCTG	-			P-0019813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	245	445	0	ENST00000274376.6:c.1579_1582del	p.Val527MetfsTer16	p.V527Mfs*16	ENST00000274376	NM_002890.2	526	TCTGtc/tc																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045946	26045946	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	105	509	0	ENST00000540144.1:c.308G>C	p.Gly103Ala	p.G103A	ENST00000540144	NM_003531.2	103	gGa/gCa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395048	139395053	+	inframe_deletion	In_Frame_Del	DEL	GGGTGC	GGGTGC	-			P-0019813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	480	666	0	ENST00000277541.6:c.5885_5890del	p.Arg1962_Thr1963del	p.R1962_T1963del	ENST00000277541	NM_017617.3	1962	cGCACCCcg/ccg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	245	774	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0019816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	91	695	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0019816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	210	732	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0019816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	100	513	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101152	41101152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	134	778	0	ENST00000373198.4:c.1204C>A	p.Gln402Lys	p.Q402K	ENST00000373198	NM_133170.3	402	Cag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112173299	112173299	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0019816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	91	357	0	ENST00000257430.4:c.2008A>T	p.Lys670Ter	p.K670*	ENST00000257430	NM_000038.5	670	Aaa/Taa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412925	63412925	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	510	472	0	ENST00000330258.3:c.242del	p.Ser81LeufsTer19	p.S81Lfs*19	ENST00000330258	NM_152424.3	81	tCt/tt																																																																															
ETV6	2120	MSKCC	GRCh37	12	12038879	12038879	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	270	645	0	ENST00000396373.4:c.1172A>G	p.Tyr391Cys	p.Y391C	ENST00000396373	NM_001987.4	391	tAt/tGt																																																																															
SOS1	6654	MSKCC	GRCh37	2	39283886	39283886	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	161	812	0	ENST00000402219.2:c.467A>G	p.Glu156Gly	p.E156G	ENST00000402219	NM_005633.3	156	gAa/gGa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730909	40730909	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201064715		P-0019816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	64	652	0	ENST00000373198.4:c.3626G>A	p.Arg1209Gln	p.R1209Q	ENST00000373198	NM_133170.3	1209	cGg/cAg																																																																															
KIT	3815	MSKCC	GRCh37	4	55561756	55561756	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376469897		P-0019816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	43	429	1	ENST00000288135.5:c.146G>A	p.Arg49His	p.R49H	ENST00000288135	NM_000222.2	49	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0019818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	47	573	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231782	36231782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	41	603	2	ENST00000300305.3:c.602G>A	p.Arg201Gln	p.R201Q	ENST00000300305		201	cGa/cAa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061149	38061193	+	inframe_deletion	In_Frame_Del	DEL	GCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAA	GCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAA	-			P-0019818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	12	222	0	ENST00000250448.2:c.796_840del	p.Phe266_Ser280del	p.F266_S280del	ENST00000250448	NM_004496.3	266	TTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGC/-																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177024	56177024	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	31	403	0	ENST00000399503.3:c.2294T>G	p.Leu765Trp	p.L765W	ENST00000399503	NM_005921.1	765	tTg/tGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916928	178916936	+	inframe_deletion	In_Frame_Del	DEL	AGGCAACCG	AGGCAACCG	-			P-0019818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	112	472	0	ENST00000263967.3:c.315_323del	p.Gly106_Arg108del	p.G106_R108del	ENST00000263967	NM_006218.2	105	gtAGGCAACCGt/gtt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061134	38061148	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGCCCCCGCTTCC	GCTGCCCCCGCTTCC	A			P-0019818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	13	215	0	ENST00000250448.2:c.841_855delinsT	p.Gly281TrpfsTer7	p.G281Wfs*7	ENST00000250448	NM_004496.3	281	GGAAGCGGGGGCAGC/T																																																																															
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0019823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	85	860	1	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0019823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	79	632	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
MET	4233	MSKCC	GRCh37	7	116340309	116340309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	37	418	1	ENST00000397752.3:c.1171G>A	p.Gly391Arg	p.G391R	ENST00000397752	NM_000245.2	391	Gga/Aga																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115273198	115273198	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	269	721	0	ENST00000438362.2:c.1260C>G	p.Phe420Leu	p.F420L	ENST00000438362	NM_001242891.1	420	ttC/ttG																																																																															
APC	324	MSKCC	GRCh37	5	112175958	112175958	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	78	416	0	ENST00000257430.4:c.4667C>G	p.Thr1556Ser	p.T1556S	ENST00000257430	NM_000038.5	1556	aCt/aGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	410	680	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	191	685	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	197	772	1	ENST00000269305.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTc/aCc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12044524	12044525	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0019834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	196	669	0	ENST00000353533.5:c.1148_1149insCA	p.Lys383AsnfsTer31	p.K383Nfs*31	ENST00000353533	NM_003010.3	383	aaa/aACaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692830	89692853	+	inframe_deletion	In_Frame_Del	DEL	GTGAAGATCTTGACCAATGGCTAA	GTGAAGATCTTGACCAATGGCTAA	-			P-0019839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	45	247	0	ENST00000371953.3:c.322_345del	p.Leu108_Asp115del	p.L108_D115del	ENST00000371953	NM_000314.4	105	tGTGAAGATCTTGACCAATGGCTAAgt/tgt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950156	38950156	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	39	616	0	ENST00000357387.3:c.3794A>C	p.Lys1265Thr	p.K1265T	ENST00000357387	NM_152756.3	1265	aAg/aCg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900786	3900786	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	66	738	0	ENST00000262367.5:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000262367	NM_004380.2	104	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	11	553	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	145	509	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MGA	23269	MSKCC	GRCh37	15	41962066	41962066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	48	496	0	ENST00000219905.7:c.974C>T	p.Ser325Phe	p.S325F	ENST00000219905	NM_001164273.1	325	tCc/tTc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47143031	47143031	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	105	600	0	ENST00000409792.3:c.4932del	p.Gln1645AsnfsTer2	p.Q1645Nfs*2	ENST00000409792	NM_014159.6	1644	ggA/gg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164103	47164103	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	76	387	0	ENST00000409792.3:c.2023G>T	p.Gly675Ter	p.G675*	ENST00000409792	NM_014159.6	675	Gga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	73	640	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	113	683	12	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	15	555	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	96	562	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	50	593	2	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	107	749	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	121	890	1	ENST00000269305.4:c.472C>T	p.Arg158Cys	p.R158C	ENST00000269305	NM_001126112.2	158	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577524	7577524	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	66	700	0	ENST00000269305.4:c.757A>G	p.Thr253Ala	p.T253A	ENST00000269305	NM_001126112.2	253	Acc/Gcc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781141	135781141	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	91	673	0	ENST00000298552.3:c.1824del	p.Phe608LeufsTer21	p.F608Lfs*21	ENST00000298552	NM_001162426.1	608	ttT/tt																																																																															
ABL1	25	MSKCC	GRCh37	9	133759443	133759443	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376925416		P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	39	791	1	ENST00000318560.5:c.1766G>A	p.Arg589His	p.R589H	ENST00000318560	NM_005157.4	589	cGc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133226412	133226412	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200114024		P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	112	712	0	ENST00000320574.5:c.3646G>A	p.Gly1216Ser	p.G1216S	ENST00000320574	NM_006231.2	1216	Ggc/Agc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135800999	135800999	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	76	619	0	ENST00000298552.3:c.338del	p.Leu113CysfsTer5	p.L113Cfs*5	ENST00000298552	NM_001162426.1	113	tTg/tg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	127	894	7	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258943	16258944	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	52	1125	0	ENST00000375759.3:c.6215dup	p.Asn2072LysfsTer51	p.N2072Kfs*51	ENST00000375759	NM_015001.2	2070	gaa/gAaa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097792	27097792	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	29	558	0	ENST00000324856.7:c.3381G>T	p.Gln1127His	p.Q1127H	ENST00000324856	NM_006015.4	1127	caG/caT																																																																															
MPL	4352	MSKCC	GRCh37	1	43803799	43803799	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	41	820	0	ENST00000372470.3:c.112del	p.Leu38Ter	p.L38*	ENST00000372470	NM_005373.2	37	Ccc/cc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72076724	72076724	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	79	640	1	ENST00000357731.5:c.773A>G	p.Tyr258Cys	p.Y258C	ENST00000357731	NM_173808.2	258	tAc/tGc																																																																															
HIST2H3D	653604	MSKCC	GRCh37	1	149784842	149784842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	32	258	0	ENST00000331491.1:c.395G>A	p.Arg132His	p.R132H	ENST00000331491	NM_001123375.2	132	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108205836	108205836	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	64	511	0	ENST00000278616.4:c.8151G>T	p.Lys2717Asn	p.K2717N	ENST00000278616	NM_000051.3	2717	aaG/aaT																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50492779	50492779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	191	715	0	ENST00000394963.4:c.1544C>T	p.Thr515Ile	p.T515I	ENST00000394963	NM_003076.4	515	aCa/aTa																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112924295	112924295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	231	852	0	ENST00000351677.2:c.1241C>T	p.Thr414Met	p.T414M	ENST00000351677	NM_002834.3	414	aCg/aTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120918	115120918	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	144	449	0	ENST00000257566.3:c.88A>G	p.Met30Val	p.M30V	ENST00000257566	NM_016569.3	30	Atg/Gtg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436761	110436761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	68	857	0	ENST00000375856.3:c.1640G>T	p.Arg547Met	p.R547M	ENST00000375856	NM_003749.2	547	aGg/aTg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30132924	30132924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	25	670	0	ENST00000331968.5:c.677C>T	p.Ala226Val	p.A226V	ENST00000331968	NM_002742.2	226	gCc/gTc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396146	396146	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	30	496	0	ENST00000262320.3:c.878+2T>C		p.X293_splice	ENST00000262320	NM_003502.3	293																																																																																
ERCC4	2072	MSKCC	GRCh37	16	14015916	14015916	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	18	414	0	ENST00000311895.7:c.236A>G	p.Glu79Gly	p.E79G	ENST00000311895	NM_005236.2	79	gAa/gGa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822385	72822385	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	144	1015	0	ENST00000268489.5:c.9790G>C	p.Ala3264Pro	p.A3264P	ENST00000268489	NM_006885.3	3264	Gcc/Ccc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348443	89348443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	124	865	0	ENST00000301030.4:c.4507G>A	p.Ala1503Thr	p.A1503T	ENST00000301030	NM_001256183.1	1503	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578279	7578280	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	116	699	0	ENST00000269305.4:c.569_570insA	p.Pro191SerfsTer18	p.P191Sfs*18	ENST00000269305	NM_001126112.2	190	cct/ccAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492890	56492906	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCCAGGGCCAGAGG	GCAGCCAGGGCCAGAGG	-			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	47	373	0	ENST00000407977.2:c.33_49del	p.Leu12AspfsTer22	p.L12Dfs*22	ENST00000407977		11	gcCCTCTGGCCCTGGCTGCtg/gctg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534372	63534377	+	inframe_deletion	In_Frame_Del	DEL	CAGCTT	CAGCTT	-			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	129	881	0	ENST00000307078.5:c.1144_1149del	p.Lys382_Leu383del	p.K382_L383del	ENST00000307078	NM_004655.3	382	AAGCTG/-																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627583	14627583	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	101	518	1	ENST00000254322.2:c.487C>A	p.Pro163Thr	p.P163T	ENST00000254322	NM_006145.1	163	Cca/Aca																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349561	15349561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	158	939	3	ENST00000263377.2:c.4013G>A	p.Arg1338Gln	p.R1338Q	ENST00000263377	NM_058243.2	1338	cGg/cAg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45871986	45871986	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	120	736	0	ENST00000391945.4:c.262C>T	p.Arg88Ter	p.R88*	ENST00000391945	NM_000400.3	88	Cga/Tga																																																																															
CASP8	841	MSKCC	GRCh37	2	202149727	202149727	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	46	699	0	ENST00000358485.4:c.1168G>C	p.Ala390Pro	p.A390P	ENST00000358485	NM_001080125.1	390	Gcc/Ccc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659763	227659763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	33	532	0	ENST00000305123.5:c.3692G>A	p.Ser1231Asn	p.S1231N	ENST00000305123	NM_005544.2	1231	aGc/aAc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795003	242795003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	167	1020	4	ENST00000334409.5:c.206G>A	p.Arg69His	p.R69H	ENST00000334409	NM_005018.2	69	cGc/cAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41564491	41564491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	38	502	0	ENST00000263253.7:c.3913C>T	p.Arg1305Cys	p.R1305C	ENST00000263253	NM_001429.3	1305	Cgt/Tgt																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169985715	169985715	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs567380681		P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	96	558	0	ENST00000295797.4:c.377G>A	p.Arg126His	p.R126H	ENST00000295797	NM_002740.5	126	cGt/cAt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430993	181430993	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	116	821	1	ENST00000325404.1:c.845A>G	p.Glu282Gly	p.E282G	ENST00000325404	NM_003106.3	282	gAg/gGg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541018	187541018	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	67	426	0	ENST00000441802.2:c.6722C>A	p.Pro2241His	p.P2241H	ENST00000441802	NM_005245.3	2241	cCt/cAt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86649045	86649046	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	51	499	0	ENST00000274376.6:c.1327dup	p.Met443AsnfsTer10	p.M443Nfs*10	ENST00000274376	NM_002890.2	442	cca/ccAa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043364	180043365	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	79	603	0	ENST00000261937.6:c.3219+2_3219+3del		p.X1073_splice	ENST00000261937	NM_182925.4	1073																																																																																
HIST1H3J	8356	MSKCC	GRCh37	6	27858216	27858216	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	119	613	0	ENST00000359303.2:c.355A>G	p.Thr119Ala	p.T119A	ENST00000359303	NM_003535.2	119	Act/Gct																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675718	30675718	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	142	1048	0	ENST00000376406.3:c.2638del	p.Ser880ValfsTer11	p.S880Vfs*11	ENST00000376406	NM_014641.2	880	Agt/gt																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324192	31324192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	120	371	0	ENST00000412585.2:c.371G>A	p.Gly124Asp	p.G124D	ENST00000412585	NM_005514.6	124	gGc/gAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391260	139391260	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	70	975	0	ENST00000277541.6:c.6931C>A	p.Leu2311Met	p.L2311M	ENST00000277541	NM_017617.3	2311	Ctg/Atg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	120	600	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151917611	151917611	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	149	728	0	ENST00000262189.6:c.3709C>T	p.Arg1237Ter	p.R1237*	ENST00000262189	NM_170606.2	1237	Cga/Tga																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223482	53223492	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCGCGGCCT	TGGCGCGGCCT	-			P-0019848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	109	666	0	ENST00000375401.3:c.3867_3877del	p.Gly1290AlafsTer6	p.G1290Afs*6	ENST00000375401	NM_004187.3	1289	caAGGCCGCGCCAgg/cagg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100624	8100624	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	349	964	0	ENST00000346208.3:c.598C>A	p.His200Asn	p.H200N	ENST00000346208		200	Cac/Aac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343425	118343425	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	145	515	0	ENST00000534358.1:c.1551G>C	p.Gln517His	p.Q517H	ENST00000534358	NM_005933.3	517	caG/caC																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863370	57863370	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	256	912	0	ENST00000228682.2:c.1465G>T	p.Gly489Cys	p.G489C	ENST00000228682	NM_005269.2	489	Ggc/Tgc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112940056	112940056	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	129	893	3	ENST00000351677.2:c.1708G>T	p.Ala570Ser	p.A570S	ENST00000351677	NM_002834.3	570	Gca/Tca																																																																															
CDH1	999	MSKCC	GRCh37	16	68842401	68842401	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	40	830	1	ENST00000261769.5:c.462A>T	p.Arg154Ser	p.R154S	ENST00000261769	NM_004360.3	154	agA/agT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	299	1008	1	ENST00000269305.4:c.823T>A	p.Cys275Ser	p.C275S	ENST00000269305	NM_001126112.2	275	Tgt/Agt																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804374	46804374	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	211	510	3	ENST00000290295.7:c.633C>A	p.Cys211Ter	p.C211*	ENST00000290295	NM_006361.5	211	tgC/tgA																																																																															
STK11	6794	MSKCC	GRCh37	19	1207104	1207105	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0019849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	366	1102	2	ENST00000326873.7:c.192_193delinsTT	p.Lys64_Glu65delinsAsnTer	p.K64_E65delinsN*	ENST00000326873	NM_000455.4	64	aaGGag/aaTTag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599995	10600018	+	inframe_deletion	In_Frame_Del	DEL	ACCATCATAGCCCCCAGCAGCATA	ACCATCATAGCCCCCAGCAGCATA	-			P-0019849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	289	966	0	ENST00000171111.5:c.1558_1581del	p.Tyr520_Gly527del	p.Y520_G527del	ENST00000171111	NM_203500.1	520	TATGCTGCTGGGGGCTATGATGGT/-																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770633	40770633	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	139	465	0	ENST00000373198.4:c.2749G>T	p.Glu917Ter	p.E917*	ENST00000373198	NM_133170.3	917	Gag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980804	40980804	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	234	769	2	ENST00000373198.4:c.1682C>A	p.Thr561Asn	p.T561N	ENST00000373198	NM_133170.3	561	aCc/aAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141027	55141027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	43	439	0	ENST00000257290.5:c.1673G>A	p.Arg558His	p.R558H	ENST00000257290	NM_006206.4	558	cGc/cAc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324216	31324224	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACCCTGGC	GACCCTGGC	-			P-0019849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	134	292	0	ENST00000412585.2:c.344-5_347del		p.X115_splice	ENST00000412585	NM_005514.6	115																																																																																
PREX2	80243	MSKCC	GRCh37	8	69104673	69104673	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	156	673	0	ENST00000288368.4:c.4517C>A	p.Ser1506Tyr	p.S1506Y	ENST00000288368	NM_024870.2	1506	tCt/tAt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342574	87342574	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	78	490	0	ENST00000277120.3:c.859C>A	p.Pro287Thr	p.P287T	ENST00000277120		287	Cca/Aca																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244642	46244642	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	125	817	0	ENST00000334344.6:c.2736G>T	p.Gln912His	p.Q912H	ENST00000334344	NM_152641.2	912	caG/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578285	7578288	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CAGA	CAGA	AC			P-0019851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	276	722	2	ENST00000269305.4:c.561_564delinsGT	p.Leu188CysfsTer20	p.L188Cfs*20	ENST00000269305	NM_001126112.2	187	ggTCTG/ggGT																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296221	15296221	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0019851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	96	953	0	ENST00000263388.2:c.2145-2A>G		p.X715_splice	ENST00000263388	NM_000435.2	715																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134880975	134880975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	71	628	1	ENST00000398015.3:c.1538G>T	p.Gly513Val	p.G513V	ENST00000398015	NM_004441.4	513	gGc/gTc																																																																															
BCL6	604	MSKCC	GRCh37	3	187444545	187444545	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	74	747	2	ENST00000232014.4:c.1682T>A	p.Leu561His	p.L561H	ENST00000232014	NM_001130845.1	561	cTc/cAc																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652153	36652153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	113	736	0	ENST00000244741.5:c.275G>T	p.Gly92Val	p.G92V	ENST00000244741	NM_000389.4	92	gGc/gTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404599	8404599	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	46	436	0	ENST00000356435.5:c.4148A>C	p.Lys1383Thr	p.K1383T	ENST00000356435		1383	aAg/aCg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0019852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	211	708	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123837	46123837	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0019852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	70	323	1	ENST00000334344.6:c.103A>T	p.Lys35Ter	p.K35*	ENST00000334344	NM_152641.2	35	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0019852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	146	722	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
CDKN1B	1027	MSKCC	GRCh37	12	12871861	12871861	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	144	477	2	ENST00000228872.4:c.578del	p.Leu193ProfsTer32	p.L193Pfs*32	ENST00000228872	NM_004064.3	193	cTc/cc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39537702	39537702	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	27	422	0	ENST00000262039.4:c.236A>G	p.Lys79Arg	p.K79R	ENST00000262039	NM_002647.2	79	aAa/aGa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52597412	52597412	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	97	728	0	ENST00000394830.3:c.3898G>C	p.Asp1300His	p.D1300H	ENST00000394830	NM_018313.4	1300	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	100	440	0	ENST00000269305.4:c.532delC	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac																																																																															
BRAF	673	MSKCC	GRCh37	7	140482926	140482927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs777474487		P-0019856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	70	483	1	ENST00000288602.6:c.1208dup	p.Ala404CysfsTer9	p.A404Cfs*9	ENST00000288602	NM_004333.4	403	cct/ccCt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249007	+	missense_variant	Missense_Mutation	ONP	GCG	GCG	TCT			P-0019856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	515	411	1	ENST00000275493.2:c.2303_2305delinsTCT	p.Ser768_Val769delinsIleLeu	p.S768_V769delinsIL	ENST00000275493	NM_005228.3	768	aGCGtg/aTCTtg																																																																															
KDR	3791	MSKCC	GRCh37	4	55976733	55976733	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0019856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	54	387	0	ENST00000263923.4:c.1092G>C	p.Trp364Cys	p.W364C	ENST00000263923	NM_002253.2	364	tgG/tgC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0019857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	242	775	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9560982	9560982	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	24	468	1	ENST00000353224.5:c.800G>T	p.Arg267Met	p.R267M	ENST00000353224	NM_177990.2	267	aGg/aTg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143067131	143067131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	127	574	0	ENST00000262992.4:c.1582G>A	p.Val528Met	p.V528M	ENST00000262992	NM_001101669.1	528	Gtg/Atg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983039	201983040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	358	891	0	ENST00000359651.3:c.890dup	p.Asn297LysfsTer4	p.N297Kfs*4	ENST00000359651		296	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0019863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	402	745	2	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717713	89717713	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	353	625	0	ENST00000371953.3:c.738del	p.Leu247TyrfsTer9	p.L247Yfs*9	ENST00000371953	NM_000314.4	246	ccG/cc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115262325	115262325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	117	681	0	ENST00000438362.2:c.2229G>T	p.Lys743Asn	p.K743N	ENST00000438362	NM_001242891.1	743	aaG/aaT																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465304	120465304	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	48	541	0	ENST00000256646.2:c.4957C>G	p.His1653Asp	p.H1653D	ENST00000256646	NM_024408.3	1653	Cac/Gac																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469123	25469134	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCTCAGGTTC	TGCCTCAGGTTC	GTAGG			P-0019864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	120	780	3	ENST00000264709.3:c.1324_1335delinsCCTAC	p.Glu442ProfsTer207	p.E442Pfs*207	ENST00000264709	NM_175629.2	442	GAACCTGAGGCA/CCTAC																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469174	25469174	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	38	590	0	ENST00000264709.3:c.1284G>C	p.Glu428Asp	p.E428D	ENST00000264709	NM_175629.2	428	gaG/gaC																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198270051	198270051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	77	643	0	ENST00000335508.6:c.1385G>T	p.Gly462Val	p.G462V	ENST00000335508	NM_012433.2	462	gGa/gTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748578	40748578	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	48	521	0	ENST00000373198.4:c.2938C>G	p.Gln980Glu	p.Q980E	ENST00000373198	NM_133170.3	980	Caa/Gaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873943	151873948	+	frameshift_variant	Frame_Shift_Del	DEL	TCCATC	TCCATC	CCATT			P-0019864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	120	658	4	ENST00000262189.6:c.8590_8595delinsAATGG	p.Asp2864AsnfsTer42	p.D2864Nfs*42	ENST00000262189	NM_170606.2	2864	GATGGA/AATGG																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964486	70964486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	121	777	0	ENST00000276594.2:c.1542G>T	p.Glu514Asp	p.E514D	ENST00000276594	NM_024504.3	514	gaG/gaT																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742462	145742462	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	264	824	0	ENST00000428558.2:c.326T>A	p.Leu109His	p.L109H	ENST00000428558	NM_004260.3	109	cTc/cAc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5022183	5022183	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	59	709	0	ENST00000381652.3:c.196G>C	p.Glu66Gln	p.E66Q	ENST00000381652	NM_004972.3	66	Gaa/Caa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	52	682	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0019867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	22	689	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0019867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	15	218	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	191	681	0	ENST00000342988.3:c.1055G>A	p.Gly352Glu	p.G352E	ENST00000342988	NM_005359.5	352	gGa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	38	397	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0019869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	248	624	4	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123247516	123247516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	152	731	2	ENST00000358487.5:c.1975A>G	p.Lys659Glu	p.K659E	ENST00000358487	NM_000141.4	659	Aag/Gag																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123247527	123247527	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	168	789	1	ENST00000358487.5:c.1964A>G	p.Asp655Gly	p.D655G	ENST00000358487	NM_000141.4	655	gAc/gGc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120373	70120374	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0019869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	791	1297	3	ENST00000245479.2:c.1376_1377dupGC	p.Thr460AlafsTer11	p.T460Afs*11	ENST00000245479	NM_000346.3	459	ggc/gGCgc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098411	11098411	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	255	875	1	ENST00000344626.4:c.929G>T	p.Arg310Leu	p.R310L	ENST00000344626	NM_003072.3	310	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579515	7579515	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	CC			P-0019869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	457	918	6	ENST00000269305.4:c.172delinsGG	p.Pro58GlyfsTer5	p.P58Gfs*5	ENST00000269305	NM_001126112.2	58	Cca/GGca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	26	698	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0019874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	73	1046	1	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946174	13946174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	50	866	3	ENST00000405192.2:c.922C>T	p.Arg308Trp	p.R308W	ENST00000405192	NM_001163147.1	308	Cgg/Tgg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612221	1612221	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	33	543	0	ENST00000344749.5:c.1798G>C	p.Glu600Gln	p.E600Q	ENST00000344749	NM_001136139.2	600	Gag/Cag																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612227	1612227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	35	566	0	ENST00000344749.5:c.1792G>A	p.Gly598Arg	p.G598R	ENST00000344749	NM_001136139.2	598	Ggg/Agg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612297	1612297	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	76	1001	0	ENST00000344749.5:c.1722G>C	p.Gln574His	p.Q574H	ENST00000344749	NM_001136139.2	574	caG/caC																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612356	1612356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	81	990	0	ENST00000344749.5:c.1663G>C	p.Glu555Gln	p.E555Q	ENST00000344749	NM_001136139.2	555	Gag/Cag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0019878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	71	530	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942171	71942171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	138	1025	2	ENST00000298229.2:c.1435C>T	p.Arg479Cys	p.R479C	ENST00000298229	NM_001567.3	479	Cgc/Tgc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075163	16075163	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	137	507	0	ENST00000268712.3:c.389T>A	p.Val130Glu	p.V130E	ENST00000268712	NM_006311.3	130	gTg/gAg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419871	152419897	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGGCATGGAGCATCTGTACAGCATG	AAAGGCATGGAGCATCTGTACAGCATG	CATGCTGTAC			P-0019878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	111	781	4	ENST00000206249.3:c.1558_1584delinsCATGCTGTAC	p.Lys520HisfsTer13	p.K520Hfs*13	ENST00000206249	NM_000125.3	520	AAAGGCATGGAGCATCTGTACAGCATG/CATGCTGTAC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	26	623	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0019879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	24	745	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0019879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	14	551	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0019880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	14	705	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0019880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	41	895	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0019880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	62	704	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741598	17741598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	10	173	1	ENST00000250003.3:c.269C>T	p.Ala90Val	p.A90V	ENST00000250003	NM_002478.4	90	gCg/gTg																																																																															
RB1	5925	MSKCC	GRCh37	13	48937085	48937085	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	36	477	0	ENST00000267163.4:c.853A>G	p.Ile285Val	p.I285V	ENST00000267163	NM_000321.2	285	Ata/Gta																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5211779	5211779	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	39	751	2	ENST00000357368.4:c.5056C>T	p.Arg1686Trp	p.R1686W	ENST00000357368	NM_002850.3	1686	Cgg/Tgg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15295792	15295792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	33	1310	1	ENST00000263388.2:c.2335C>T	p.Pro779Ser	p.P779S	ENST00000263388	NM_000435.2	779	Ccc/Tcc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324545	31324545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	49	824	1	ENST00000412585.2:c.263C>T	p.Thr88Ile	p.T88I	ENST00000412585	NM_005514.6	88	aCa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0019882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	323	867	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916924	178916926	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0019882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	231	744	0	ENST00000263967.3:c.311_313del	p.Pro104_Val105delinsLeu	p.P104_V105delinsL	ENST00000263967	NM_006218.2	104	cCAGta/cta																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244338	46244338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	248	609	0	ENST00000334344.6:c.2432G>A	p.Cys811Tyr	p.C811Y	ENST00000334344	NM_152641.2	811	tGt/tAt																																																																															
TOP1	7150	MSKCC	GRCh37	20	39728757	39728757	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	84	749	0	ENST00000361337.2:c.1037A>G	p.His346Arg	p.H346R	ENST00000361337	NM_003286.2	346	cAc/cGc																																																																															
EP300	2033	MSKCC	GRCh37	22	41513447	41513447	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	292	760	0	ENST00000263253.7:c.351G>C	p.Leu117Phe	p.L117F	ENST00000263253	NM_001429.3	117	ttG/ttC																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111451	8111452	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	66	742	0	ENST00000346208.3:c.938dup	p.Gly314ArgfsTer38	p.G314Rfs*38	ENST00000346208		313	gca/gCca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0019897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	51	812	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041582	47041582	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	80	836	2	ENST00000329236.7:c.1573C>T	p.Gln525Ter	p.Q525*	ENST00000329236	NM_001204466.1	525	Cag/Tag																																																																															
PAK1	5058	MSKCC	GRCh37	11	77060330	77060331	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CACTGAA			P-0019900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	52	273	0	ENST00000356341.3:c.837-5_838dup	p.Ala280ValfsTer22	p.A280Vfs*22	ENST00000356341	NM_002576.4	280	gct/gTTCAGTGct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	335	745	0	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589610	67589612	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0019900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	199	473	0	ENST00000274335.5:c.1376_1378delAAA	p.Lys459del	p.K459del	ENST00000274335		458	gAAAaa/gaa																																																																															
APC	324	MSKCC	GRCh37	5	112174182	112174182	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0019900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	220	470	0	ENST00000257430.4:c.2891T>G	p.Leu964Ter	p.L964*	ENST00000257430	NM_000038.5	964	tTa/tGa																																																																															
APC	324	MSKCC	GRCh37	5	112175754	112175760	+	frameshift_variant	Frame_Shift_Del	DEL	TATTACA	TATTACA	-			P-0019900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	59	345	0	ENST00000257430.4:c.4464_4470del	p.Leu1488PhefsTer17	p.L1488Ffs*17	ENST00000257430	NM_000038.5	1488	tTATTACAt/tt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	63	597	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CBFB	865	MSKCC	GRCh37	16	67070644	67070645	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0019903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	21	259	0	ENST00000412916.2:c.268_269insCT	p.Arg90ThrfsTer9	p.R90Tfs*9	ENST00000412916		90	aga/aCTga																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55140767	55140767	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	69	646	0	ENST00000257290.5:c.1628T>A	p.Ile543Asn	p.I543N	ENST00000257290	NM_006206.4	543	aTt/aAt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177385	56177403	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTTCTTTCAGGTATAAG	TTTTTCTTTCAGGTATAAG	-			P-0019903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	18	280	0	ENST00000399503.3:c.2370-12_2376del		p.X790_splice	ENST00000399503	NM_005921.1	790																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	262	537	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	170	733	1	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112138	115112138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	261	833	0	ENST00000257566.3:c.1602G>T	p.Met534Ile	p.M534I	ENST00000257566	NM_016569.3	534	atG/atT																																																																															
DIS3	22894	MSKCC	GRCh37	13	73345042	73345042	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	148	548	0	ENST00000377767.4:c.1755G>T	p.Lys585Asn	p.K585N	ENST00000377767	NM_014953.3	585	aaG/aaT																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013742	12013742	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	105	489	0	ENST00000353533.5:c.684A>T	p.Arg228Ser	p.R228S	ENST00000353533	NM_003010.3	228	agA/agT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306761	41306761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	187	458	0	ENST00000373198.4:c.898G>T	p.Val300Leu	p.V300L	ENST00000373198	NM_133170.3	300	Gtg/Ttg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29005391	29005391	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	133	465	0	ENST00000282397.4:c.870C>A	p.Asn290Lys	p.N290K	ENST00000282397	NM_002019.4	290	aaC/aaA																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937847	36937847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	172	912	1	ENST00000361632.4:c.989C>A	p.Thr330Asn	p.T330N	ENST00000361632		330	aCc/aAc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462209	120462209	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	110	455	2	ENST00000256646.2:c.5507C>A	p.Ser1836Tyr	p.S1836Y	ENST00000256646	NM_024408.3	1836	tCt/tAt																																																																															
RET	5979	MSKCC	GRCh37	10	43610170	43610170	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	211	769	0	ENST00000355710.3:c.2122G>T	p.Ala708Ser	p.A708S	ENST00000355710	NM_020975.4	708	Gcc/Tcc																																																																															
TET1	80312	MSKCC	GRCh37	10	70405593	70405593	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	223	690	0	ENST00000373644.4:c.3107A>G	p.His1036Arg	p.H1036R	ENST00000373644	NM_030625.2	1036	cAt/cGt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562433	21562433	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	132	505	0	ENST00000382592.4:c.1486G>C	p.Gly496Arg	p.G496R	ENST00000382592	NM_014572.2	496	Ggc/Cgc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28588675	28588675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	108	487	0	ENST00000241453.7:c.2773T>C	p.Cys925Arg	p.C925R	ENST00000241453	NM_004119.2	925	Tgc/Cgc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28893589	28893590	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	142	579	3	ENST00000282397.4:c.3256_3257delinsTT	p.Gly1086Leu	p.G1086L	ENST00000282397	NM_002019.4	1086	GGa/TTa																																																																															
RB1	5925	MSKCC	GRCh37	13	48919214	48919214	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	84	199	0	ENST00000267163.4:c.381-2A>T		p.X127_splice	ENST00000267163	NM_000321.2	127																																																																																
DICER1	23405	MSKCC	GRCh37	14	95599663	95599663	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	58	389	0	ENST00000343455.3:c.133A>T	p.Arg45Ter	p.R45*	ENST00000343455	NM_177438.2	45	Aga/Tga																																																																															
AXIN1	8312	MSKCC	GRCh37	16	339451	339451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	196	694	1	ENST00000262320.3:c.2451G>T	p.Lys817Asn	p.K817N	ENST00000262320	NM_003502.3	817	aaG/aaT																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813941	50813941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	163	587	0	ENST00000398568.2:c.1495G>T	p.Ala499Ser	p.A499S	ENST00000398568	NM_001042412.1	499	Gct/Tct																																																																															
NUP93	9688	MSKCC	GRCh37	16	56867193	56867193	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	76	606	0	ENST00000308159.5:c.1412A>C	p.Gln471Pro	p.Q471P	ENST00000308159	NM_014669.4	471	cAg/cCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991404	72991404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	75	773	1	ENST00000268489.5:c.2641G>T	p.Ala881Ser	p.A881S	ENST00000268489	NM_006885.3	881	Gcc/Tcc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991952	72991952	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	166	579	0	ENST00000268489.5:c.2093G>T	p.Gly698Val	p.G698V	ENST00000268489	NM_006885.3	698	gGg/gTg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41251843	41251843	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	162	713	1	ENST00000357654.3:c.496A>T	p.Arg166Trp	p.R166W	ENST00000357654	NM_007294.3	166	Agg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5215326	5215326	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064298		P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	62	512	0	ENST00000357368.4:c.4292C>T	p.Ser1431Phe	p.S1431F	ENST00000357368	NM_002850.3	1431	tCc/tTc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17950390	17950390	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	212	801	0	ENST00000458235.1:c.1337C>A	p.Pro446His	p.P446H	ENST00000458235	NM_000215.3	446	cCc/cAc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46268766	46268766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	59	596	1	ENST00000371998.3:c.3051G>A	p.Met1017Ile	p.M1017I	ENST00000371998		1017	atG/atA																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42839745	42839745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	59	671	0	ENST00000398585.3:c.1494G>T	p.Trp498Cys	p.W498C	ENST00000398585	NM_001135099.1	498	tgG/tgT																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434112	12434112	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	55	356	0	ENST00000287820.6:c.481-1G>T		p.X161_splice	ENST00000287820	NM_015869.4	161																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134670881	134670881	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	81	300	0	ENST00000398015.3:c.792C>G	p.Ser264Arg	p.S264R	ENST00000398015	NM_004441.4	264	agC/agG																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134825295	134825295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	51	341	0	ENST00000398015.3:c.811C>A	p.Pro271Thr	p.P271T	ENST00000398015	NM_004441.4	271	Cct/Act																																																																															
ATR	545	MSKCC	GRCh37	3	142281604	142281604	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	186	652	0	ENST00000350721.4:c.640A>G	p.Thr214Ala	p.T214A	ENST00000350721	NM_001184.3	214	Act/Gct																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170011257	170011257	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	79	710	0	ENST00000295797.4:c.1378G>C	p.Asp460His	p.D460H	ENST00000295797	NM_002740.5	460	Gat/Cat																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1957012	1957012	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	166	604	0	ENST00000382891.5:c.2463G>T	p.Lys821Asn	p.K821N	ENST00000382891	NM_133335.3	821	aaG/aaT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187558046	187558046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	38	286	0	ENST00000441802.2:c.3665G>T	p.Ser1222Ile	p.S1222I	ENST00000441802	NM_005245.3	1222	aGt/aTt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31521267	31521267	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	175	649	0	ENST00000344624.3:c.910G>T	p.Glu304Ter	p.E304*	ENST00000344624		304	Gaa/Taa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67576527	67576527	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	122	468	0	ENST00000274335.5:c.806G>T	p.Ser269Ile	p.S269I	ENST00000274335		269	aGc/aTc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449444	149449444	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	125	411	1	ENST00000286301.3:c.1502T>A	p.Ile501Asn	p.I501N	ENST00000286301	NM_005211.3	501	aTc/aAc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169917	32169917	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	243	818	3	ENST00000375023.3:c.3691C>A	p.Pro1231Thr	p.P1231T	ENST00000375023	NM_004557.3	1231	Cca/Aca																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729832	41729832	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	82	362	1	ENST00000242208.4:c.697C>A	p.Gln233Lys	p.Q233K	ENST00000242208	NM_002192.2	233	Cag/Aag																																																																															
HGF	3082	MSKCC	GRCh37	7	81350081	81350081	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	176	446	0	ENST00000222390.5:c.1251G>T	p.Lys417Asn	p.K417N	ENST00000222390	NM_000601.4	417	aaG/aaT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106524643	106524643	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	111	370	0	ENST00000359195.3:c.2804A>G	p.Tyr935Cys	p.Y935C	ENST00000359195	NM_002649.2	935	tAc/tGc																																																																															
MET	4233	MSKCC	GRCh37	7	116339673	116339673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	138	386	1	ENST00000397752.3:c.535G>T	p.Ala179Ser	p.A179S	ENST00000397752	NM_000245.2	179	Gcc/Tcc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879121	151879121	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	249	560	0	ENST00000262189.6:c.5824A>T	p.Thr1942Ser	p.T1942S	ENST00000262189	NM_170606.2	1942	Aca/Tca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507318	8507318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	39	402	0	ENST00000356435.5:c.1660G>T	p.Gly554Trp	p.G554W	ENST00000356435		554	Ggg/Tgg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636727	8636727	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	26	384	0	ENST00000356435.5:c.182G>T	p.Gly61Val	p.G61V	ENST00000356435		61	gGa/gTa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98240450	98240450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	58	410	0	ENST00000331920.6:c.1234G>T	p.Ala412Ser	p.A412S	ENST00000331920	NM_000264.3	412	Gca/Tca																																																																															
AR	367	MSKCC	GRCh37	X	66765380	66765380	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	98	676	1	ENST00000374690.3:c.392G>T	p.Cys131Phe	p.C131F	ENST00000374690	NM_000044.3	131	tGc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	16	667	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0019906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	27	841	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597452	10597452	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	96	714	0	ENST00000171111.5:c.1751A>G	p.Tyr584Cys	p.Y584C	ENST00000171111	NM_203500.1	584	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0019914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	68	484	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688809	47688811	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0019914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	40	401	0	ENST00000347630.2:c.489_491del	p.Val164del	p.V164del	ENST00000347630	NM_001007230.1	163	gtTGTg/gtg																																																																															
KDR	3791	MSKCC	GRCh37	4	55972051	55972051	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	73	484	1	ENST00000263923.4:c.1593A>T	p.Glu531Asp	p.E531D	ENST00000263923	NM_002253.2	531	gaA/gaT																																																																															
AR	367	MSKCC	GRCh37	X	66765667	66765667	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	29	830	0	ENST00000374690.3:c.679G>T	p.Gly227Trp	p.G227W	ENST00000374690	NM_000044.3	227	Ggg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108205774	108205774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	17	510	0	ENST00000278616.4:c.8089A>G	p.Asn2697Asp	p.N2697D	ENST00000278616	NM_000051.3	2697	Aat/Gat																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169993015	169993015	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0019918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	12	314	0	ENST00000295797.4:c.647-2A>G		p.X216_splice	ENST00000295797	NM_002740.5	216																																																																																
AGO2	27161	MSKCC	GRCh37	8	141568614	141568614	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	55	596	0	ENST00000220592.5:c.848A>G	p.Asn283Ser	p.N283S	ENST00000220592	NM_012154.3	283	aAt/aGt																																																																															
ATM	472	MSKCC	GRCh37	11	108173632	108173634	+	frameshift_variant	Frame_Shift_Del	DEL	ATA	ATA	G			P-0019918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	29	473	0	ENST00000278616.4:c.5372_5374delinsG	p.Asp1791GlyfsTer9	p.D1791Gfs*9	ENST00000278616	NM_000051.3	1791	gATAta/gGta																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	333	831	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
CD276	80381	MSKCC	GRCh37	15	73996765	73996765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	84	352	1	ENST00000318443.5:c.1321C>T	p.Arg441Cys	p.R441C	ENST00000318443	NM_001024736.1	441	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576928	7576938	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TAGGAAAGAGG	TAGGAAAGAGG	-			P-0019927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	334	817	0	ENST00000269305.4:c.920-12_920-2del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
DNMT3A	1788	MSKCC	GRCh37	2	25464480	25464481	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	179	814	0	ENST00000264709.3:c.2032_2033insT	p.Gln678LeufsTer35	p.Q678Lfs*35	ENST00000264709	NM_175629.2	678	cag/cTag																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225770	26225770	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	111	687	0	ENST00000360408.1:c.388C>T	p.Arg130Cys	p.R130C	ENST00000360408	NM_003532.2	130	Cgc/Tgc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28624268	28624268	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	79	878	0	ENST00000241453.7:c.706G>C	p.Glu236Gln	p.E236Q	ENST00000241453	NM_004119.2	236	Gaa/Caa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178679	56178679	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	101	335	0	ENST00000399503.3:c.3652A>T	p.Ile1218Phe	p.I1218F	ENST00000399503	NM_005921.1	1218	Att/Ttt																																																																															
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	264	398	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845890	156845890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	128	957	0	ENST00000524377.1:c.1520G>A	p.Arg507His	p.R507H	ENST00000524377	NM_002529.3	507	cGc/cAc																																																																															
AR	367	MSKCC	GRCh37	X	66937372	66937372	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	38	390	0	ENST00000374690.3:c.2226G>C	p.Trp742Cys	p.W742C	ENST00000374690	NM_000044.3	742	tgG/tgC																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373322	118373322	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	87	680	0	ENST00000534358.1:c.6715C>G	p.Leu2239Val	p.L2239V	ENST00000534358	NM_005933.3	2239	Ctt/Gtt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025771	48025771	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	44	345	0	ENST00000234420.5:c.649G>C	p.Asp217His	p.D217H	ENST00000234420	NM_000179.2	217	Gat/Cat																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022311	31022311	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	229	582	0	ENST00000375687.4:c.1796C>A	p.Pro599His	p.P599H	ENST00000375687	NM_015338.5	599	cCc/cAc																																																																															
HGF	3082	MSKCC	GRCh37	7	81346583	81346602	+	frameshift_variant	Frame_Shift_Del	DEL	GGATTTCCCGTGTAGCACCA	GGATTTCCCGTGTAGCACCA	-			P-0019933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	172	576	0	ENST00000222390.5:c.1351_1370del	p.Trp451ThrfsTer13	p.W451Tfs*13	ENST00000222390	NM_000601.4	451	TGGTGCTACACGGGAAATCCa/a																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509555	106509555	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	171	816	2	ENST00000359195.3:c.1549T>A	p.Ser517Thr	p.S517T	ENST00000359195	NM_002649.2	517	Tcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	234	643	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178948136	178948136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	32	486	0	ENST00000263967.3:c.2908G>A	p.Glu970Lys	p.E970K	ENST00000263967	NM_006218.2	970	Gaa/Aaa																																																																															
LMO1	4004	MSKCC	GRCh37	11	8251907	8251907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	285	828	6	ENST00000335790.3:c.170G>A	p.Arg57His	p.R57H	ENST00000335790	NM_002315.2	57	cGc/cAc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577506	64577507	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	301	636	0	ENST00000337652.1:c.75dup	p.Glu26ArgfsTer91	p.E26Rfs*91	ENST00000337652	NM_130803.2	25	-/C																																																																															
FANCA	2175	MSKCC	GRCh37	16	89838145	89838145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	305	774	2	ENST00000389301.3:c.2092G>A	p.Glu698Lys	p.E698K	ENST00000389301	NM_000135.2	698	Gag/Aag																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128028977	128028977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	157	766	0	ENST00000285398.2:c.1880C>T	p.Ser627Leu	p.S627L	ENST00000285398	NM_000122.1	627	tCa/tTa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16247407	16247407	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	49	489	0	ENST00000375759.3:c.1678A>G	p.Asn560Asp	p.N560D	ENST00000375759	NM_015001.2	560	Aat/Gat																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258803	16258803	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	275	765	0	ENST00000375759.3:c.6068T>C	p.Val2023Ala	p.V2023A	ENST00000375759	NM_015001.2	2023	gTg/gCg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259043	16259043	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	258	725	0	ENST00000375759.3:c.6313delG	p.Ala2105LeufsTer33	p.A2105Lfs*33	ENST00000375759	NM_015001.2	2103	aGg/ag																																																																															
STK40	83931	MSKCC	GRCh37	1	36824388	36824388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	263	717	0	ENST00000373129.3:c.148G>A	p.Val50Met	p.V50M	ENST00000373129	NM_032017.1	50	Gtg/Atg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	193	431	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	197	482	2	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165717	118165718	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	166	390	1	ENST00000369448.3:c.228dup	p.Gly77TrpfsTer33	p.G77Wfs*33	ENST00000369448	NM_017709.3	76	gct/gcTt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120483219	120483219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	102	558	2	ENST00000256646.2:c.3142C>T	p.Arg1048Cys	p.R1048C	ENST00000256646	NM_024408.3	1048	Cgc/Tgc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162741813	162741813	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	183	391	1	ENST00000367921.3:c.1505-1G>T		p.X502_splice	ENST00000367921	NM_006182.2	502																																																																																
AKT3	10000	MSKCC	GRCh37	1	243828126	243828126	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	300	671	3	ENST00000263826.5:c.232C>A	p.Gln78Lys	p.Q78K	ENST00000263826	NM_005465.4	78	Cag/Aag																																																																															
RET	5979	MSKCC	GRCh37	10	43596120	43596120	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	262	796	0	ENST00000355710.3:c.287A>G	p.Tyr96Cys	p.Y96C	ENST00000355710	NM_020975.4	96	tAc/tGc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710595	114710597	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs754968616		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	206	718	0	ENST00000543371.1:c.85_87del	p.Glu29del	p.E29del	ENST00000543371	NM_001198531.1	27	cAGGag/cag																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14380349	14380349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	186	482	0	ENST00000256196.4:c.68G>A	p.Gly23Asp	p.G23D	ENST00000256196		23	gGc/gAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343660	118343660	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	44	543	0	ENST00000534358.1:c.1790delT	p.Leu597CysfsTer26	p.L597Cfs*26	ENST00000534358	NM_005933.3	596	Ttt/tt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373430	118373430	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	183	539	0	ENST00000534358.1:c.6823A>G	p.Thr2275Ala	p.T2275A	ENST00000534358	NM_005933.3	2275	Act/Gct																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125523663	125523663	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	121	619	0	ENST00000428830.2:c.1256G>T	p.Arg419Met	p.R419M	ENST00000428830	NM_001114121.2	419	aGg/aTg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	209	473	7	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	211	739	11	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420208	49420208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	314	854	0	ENST00000301067.7:c.15541G>T	p.Gly5181Trp	p.G5181W	ENST00000301067	NM_003482.3	5181	Ggg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432243	49432243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	355	891	3	ENST00000301067.7:c.8896C>T	p.Arg2966Trp	p.R2966W	ENST00000301067	NM_003482.3	2966	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443482	49443482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	216	525	0	ENST00000301067.7:c.3889C>T	p.Arg1297Cys	p.R1297C	ENST00000301067	NM_003482.3	1297	Cgt/Tgt																																																																															
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	344	876	4	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426790	121426790	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201095611		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	283	807	2	ENST00000257555.6:c.481G>A	p.Ala161Thr	p.A161T	ENST00000257555		161	Gcc/Acc																																																																															
POLE	5426	MSKCC	GRCh37	12	133202290	133202290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	321	839	0	ENST00000320574.5:c.6598G>A	p.Glu2200Lys	p.E2200K	ENST00000320574	NM_006231.2	2200	Gag/Aag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434967	110434967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	343	1007	4	ENST00000375856.3:c.3434G>A	p.Arg1145His	p.R1145H	ENST00000375856	NM_003749.2	1145	cGc/cAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435136	110435136	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs780127725		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	150	834	0	ENST00000375856.3:c.3265G>C	p.Ala1089Pro	p.A1089P	ENST00000375856	NM_003749.2	1089	Gcc/Ccc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30098266	30098266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	148	760	2	ENST00000331968.5:c.1706G>A	p.Cys569Tyr	p.C569Y	ENST00000331968	NM_002742.2	569	tGc/tAc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061249	38061249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	283	801	0	ENST00000250448.2:c.740A>G	p.His247Arg	p.H247R	ENST00000250448	NM_004496.3	247	cAc/cGc																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68353890	68353890	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	282	637	0	ENST00000487270.1:c.725T>C	p.Leu242Ser	p.L242S	ENST00000487270	NM_133509.3	242	tTg/tCg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609807	81609807	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	157	406	1	ENST00000298171.2:c.1405C>A	p.Leu469Ile	p.L469I	ENST00000298171	NM_000369.2	469	Ctc/Atc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643578	38643578	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	270	719	2	ENST00000299084.4:c.1048G>T	p.Gly350Ter	p.G350*	ENST00000299084	NM_152594.2	350	Gga/Tga																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	316	1005	5	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2122886	2122886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	150	845	0	ENST00000219476.3:c.2257G>A	p.Ala753Thr	p.A753T	ENST00000219476	NM_000548.3	753	Gcc/Acc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223214	2223214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	312	823	0	ENST00000326181.6:c.826G>A	p.Glu276Lys	p.E276K	ENST00000326181	NM_032271.2	276	Gag/Aag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3634851	3634853	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	292	797	0	ENST00000294008.3:c.4656_4658del	p.Lys1552del	p.K1552del	ENST00000294008	NM_032444.2	1552	aaGAAc/aac																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639726	3639726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	401	1095	3	ENST00000294008.3:c.3913G>A	p.Ala1305Thr	p.A1305T	ENST00000294008	NM_032444.2	1305	Gca/Aca																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3828768	3828768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	309	752	1	ENST00000262367.5:c.1874G>A	p.Arg625His	p.R625H	ENST00000262367	NM_004380.2	625	cGc/cAc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	233	716	1	ENST00000264010.4:c.2070delA	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821938	72821938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	60	326	2	ENST00000268489.5:c.10237G>A	p.Asp3413Asn	p.D3413N	ENST00000268489	NM_006885.3	3413	Gac/Aac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827702	72827702	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	317	581	1	ENST00000268489.5:c.8879T>A	p.Val2960Asp	p.V2960D	ENST00000268489	NM_006885.3	2960	gTc/gAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	175	482	4	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346157	89346158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	25	275	0	ENST00000301030.4:c.6792dup	p.Ala2265ArgfsTer8	p.A2265Rfs*8	ENST00000301030	NM_001256183.1	2264	-/C																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347752	89347752	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148243995		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	55	678	0	ENST00000301030.4:c.5198C>T	p.Ala1733Val	p.A1733V	ENST00000301030	NM_001256183.1	1733	gCg/gTg																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216380	7216380	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	262	725	1	ENST00000380728.2:c.868delC	p.Gln290SerfsTer55	p.Q290Sfs*55	ENST00000380728		290	Cag/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	304	763	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782596		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	250	609	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686901	37686901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	128	623	2	ENST00000447079.4:c.3810del	p.Gly1271AspfsTer23	p.G1271Dfs*23	ENST00000447079	NM_015083.1	1269	Ccc/cc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244070	41244070	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	47	686	0	ENST00000357654.3:c.3478A>G	p.Lys1160Glu	p.K1160E	ENST00000357654	NM_007294.3	1160	Aag/Gag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	246	687	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435233	56435234	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	263	753	0	ENST00000407977.2:c.1903dup	p.Ser635LysfsTer112	p.S635Kfs*112	ENST00000407977		635	agt/aAgt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440757	56440757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	211	533	0	ENST00000407977.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000407977		154	cCg/cTg																																																																															
CD79B	974	MSKCC	GRCh37	17	62009590	62009590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	179	859	0	ENST00000392795.3:c.32G>A	p.Ser11Asn	p.S11N	ENST00000392795	NM_001039933.1	11	aGc/aAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119010	70119010	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	309	914	0	ENST00000245479.2:c.582G>T	p.Glu194Asp	p.E194D	ENST00000245479	NM_000346.3	194	gaG/gaT																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78931487	78931487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	275	851	1	ENST00000306801.3:c.3434G>A	p.Arg1145Gln	p.R1145Q	ENST00000306801	NM_020761.2	1145	cGg/cAg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619821	1619821	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	319	939	0	ENST00000344749.5:c.1125delC	p.Gly376ValfsTer18	p.G376Vfs*18	ENST00000344749	NM_001136139.2	375	ccC/cc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226589	2226589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	159	891	4	ENST00000398665.3:c.4069C>T	p.Arg1357Cys	p.R1357C	ENST00000398665	NM_032482.2	1357	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210704	5210704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	265	754	0	ENST00000357368.4:c.5347C>T	p.Arg1783Trp	p.R1783W	ENST00000357368	NM_002850.3	1783	Cgg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274304	5274304	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	305	775	6	ENST00000357368.4:c.143del	p.Gly48ValfsTer17	p.G48Vfs*17	ENST00000357368	NM_002850.3	48	gGt/gt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599970	10599970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	346	865	1	ENST00000171111.5:c.1606C>T	p.Arg536Cys	p.R536C	ENST00000171111	NM_203500.1	536	Cgc/Tgc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11107001	11107001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	146	686	4	ENST00000344626.4:c.1706G>A	p.Arg569Gln	p.R569Q	ENST00000344626	NM_003072.3	569	cGg/cAg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15295828	15295828	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	329	964	1	ENST00000263388.2:c.2299C>T	p.Arg767Cys	p.R767C	ENST00000263388	NM_000435.2	767	Cgt/Tgt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303200	15303200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	311	989	1	ENST00000263388.2:c.328C>T	p.Arg110Cys	p.R110C	ENST00000263388	NM_000435.2	110	Cgt/Tgt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	125	760	2	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																															
AKT2	208	MSKCC	GRCh37	19	40745977	40745977	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	294	797	0	ENST00000392038.2:c.614A>G	p.Gln205Arg	p.Q205R	ENST00000392038	NM_001626.4	205	cAg/cGg																																																																															
ERF	2077	MSKCC	GRCh37	19	42752788	42752789	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	282	960	0	ENST00000222329.4:c.1475_1476del	p.Cys492SerfsTer13	p.C492Sfs*13	ENST00000222329	NM_006494.2	492	tGT/t																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	303	1043	2	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
ERF	2077	MSKCC	GRCh37	19	42753887	42753887	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	293	920	0	ENST00000222329.4:c.377del	p.Gly126ValfsTer145	p.G126Vfs*145	ENST00000222329	NM_006494.2	126	gGt/gt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716250	52716250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	235	691	1	ENST00000322088.6:c.694G>A	p.Ala232Thr	p.A232T	ENST00000322088	NM_014225.5	232	Gcc/Acc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086094	16086094	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	115	830	3	ENST00000281043.3:c.1274del	p.Lys425ArgfsTer31	p.K425Rfs*31	ENST00000281043	NM_005378.4	424	Aaa/aa																																																																															
ALK	238	MSKCC	GRCh37	2	29416200	29416200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	128	656	0	ENST00000389048.3:c.4753G>A	p.Gly1585Ser	p.G1585S	ENST00000389048	NM_004304.4	1585	Ggc/Agc																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919691	96919691	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200327514		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	99	554	0	ENST00000258439.3:c.572C>T	p.Thr191Met	p.T191M	ENST00000258439	NM_001193304.2	191	aCg/aTg																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204737495	204737495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	126	698	3	ENST00000302823.3:c.632G>A	p.Cys211Tyr	p.C211Y	ENST00000302823	NM_005214.4	211	tGt/tAt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251644	212251644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	285	494	0	ENST00000342788.4:c.3415C>T	p.Arg1139Trp	p.R1139W	ENST00000342788	NM_005235.2	1139	Cgg/Tgg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39745000	39745000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	144	740	0	ENST00000361337.2:c.1790C>T	p.Thr597Met	p.T597M	ENST00000361337	NM_003286.2	597	aCg/aTg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46265178	46265178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	205	448	1	ENST00000371998.3:c.2048G>A	p.Arg683Gln	p.R683Q	ENST00000371998		683	cGg/cAg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42852493	42852493	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	301	879	0	ENST00000398585.3:c.593A>G	p.Tyr198Cys	p.Y198C	ENST00000398585	NM_001135099.1	198	tAc/tGc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274897	41274897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	106	628	0	ENST00000349496.5:c.1147T>C	p.Trp383Arg	p.W383R	ENST00000349496	NM_001904.3	383	Tgg/Cgg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47058596	47058596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	253	668	0	ENST00000409792.3:c.7682C>T	p.Thr2561Ile	p.T2561I	ENST00000409792	NM_014159.6	2561	aCt/aTt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440912	52440912	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	284	686	0	ENST00000460680.1:c.592delG	p.Glu198ArgfsTer33	p.E198Rfs*33	ENST00000460680	NM_004656.3	198	Gag/ag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	217	626	0	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427721	72427721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	161	425	0	ENST00000477973.2:c.767G>A	p.Val257Ile	p.V257I	ENST00000477973	NM_012234.5	257	Gtc/Atc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200004	128200004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	146	786	0	ENST00000341105.2:c.1301C>T	p.Ala434Val	p.A434V	ENST00000341105	NM_032638.4	434	gCt/gTt																																																																															
BCL6	604	MSKCC	GRCh37	3	187440320	187440320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	132	599	0	ENST00000232014.4:c.2047G>A	p.Ala683Thr	p.A683T	ENST00000232014	NM_001130845.1	683	Gcc/Acc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1795713	1795713	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	139	314	0	ENST00000260795.2:c.52G>C	p.Ala18Pro	p.A18P	ENST00000260795		18	Gcc/Ccc																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383944	84383944	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	120	701	1	ENST00000321945.7:c.908del	p.Asn303IlefsTer17	p.N303Ifs*17	ENST00000321945	NM_139076.2	303	aAt/at																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589576	67589576	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1289537429		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	163	523	0	ENST00000274335.5:c.1344del	p.Lys448AsnfsTer32	p.K448Nfs*32	ENST00000274335		447	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112157674	112157674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	93	521	0	ENST00000257430.4:c.1394C>T	p.Ala465Val	p.A465V	ENST00000257430	NM_000038.5	465	gCa/gTa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149433707	149433707	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	269	702	1	ENST00000286301.3:c.2844T>A	p.Ser948Arg	p.S948R	ENST00000286301	NM_005211.3	948	agT/agA																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638357	176638357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	88	776	3	ENST00000439151.2:c.2957C>T	p.Ala986Val	p.A986V	ENST00000439151	NM_022455.4	986	gCa/gTa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176675287	176675287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	97	482	2	ENST00000439151.2:c.4603C>T	p.Arg1535Cys	p.R1535C	ENST00000439151	NM_022455.4	1535	Cgc/Tgc																																																																															
IRF4	3662	MSKCC	GRCh37	6	393366	393366	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	43	419	0	ENST00000380956.4:c.214A>G	p.Lys72Glu	p.K72E	ENST00000380956	NM_001195286.1	72	Aag/Gag																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27840030	27840030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	164	493	1	ENST00000328488.2:c.64G>A	p.Ala22Thr	p.A22T	ENST00000328488	NM_003533.2	22	Gcc/Acc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821580	32821582	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	290	863	0	ENST00000354258.4:c.12_14del	p.Leu5del	p.L5del	ENST00000354258	NM_000593.5	4	ctTCTc/ctc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202351	138202351	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	105	729	0	ENST00000237289.4:c.2274del	p.Lys759SerfsTer57	p.K759Sfs*57	ENST00000237289	NM_001270507.1	756	gaC/ga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527705	157527705	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	232	672	1	ENST00000346085.5:c.5430G>T	p.Gln1810His	p.Q1810H	ENST00000346085	NM_020732.3	1810	caG/caT																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527931	157527931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	243	738	0	ENST00000346085.5:c.5659del	p.Ala1887HisfsTer87	p.A1887Hfs*87	ENST00000346085	NM_020732.3	1886	Ggg/gg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683680	162683680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	225	605	1	ENST00000366898.1:c.289C>T	p.Arg97Trp	p.R97W	ENST00000366898	NM_004562.2	97	Cgg/Tgg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026652	6026653	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1345	214	1138	0	ENST00000265849.7:c.1743dup	p.Glu582ArgfsTer8	p.E582Rfs*8	ENST00000265849	NM_000535.5	581	-/A																																																																															
ETV1	2115	MSKCC	GRCh37	7	13949307	13949307	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	75	407	0	ENST00000405192.2:c.821del	p.Gly274AlafsTer46	p.G274Afs*46	ENST00000405192	NM_001163147.1	274	gGc/gc																																																																															
SMO	6608	MSKCC	GRCh37	7	128852282	128852282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	121	735	1	ENST00000249373.3:c.2354C>T	p.Ser785Leu	p.S785L	ENST00000249373	NM_005631.4	785	tCg/tTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891109	151891109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	172	425	2	ENST00000262189.6:c.4645C>T	p.Pro1549Ser	p.P1549S	ENST00000262189	NM_170606.2	1549	Cca/Tca																																																																															
TCEB1	6921	MSKCC	GRCh37	8	74868172	74868172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	51	156	0	ENST00000284811.8:c.122C>T	p.Thr41Met	p.T41M	ENST00000284811		41	aCg/aTg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141542687	141542687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	318	788	1	ENST00000220592.5:c.2299G>A	p.Val767Ile	p.V767I	ENST00000220592	NM_012154.3	767	Gtc/Atc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737551	145737551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	328	746	1	ENST00000428558.2:c.3212G>A	p.Arg1071His	p.R1071H	ENST00000428558	NM_004260.3	1071	cGc/cAc																																																																															
SYK	6850	MSKCC	GRCh37	9	93639911	93639911	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	79	421	0	ENST00000375746.1:c.1240A>G	p.Lys414Glu	p.K414E	ENST00000375746	NM_001174167.1	414	Aaa/Gaa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39937164	39937164	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	174	444	1	ENST00000378444.4:c.19del	p.Leu7CysfsTer9	p.L7Cfs*9	ENST00000378444	NM_001123385.1	7	Ctg/tg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949134	44949134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	40	342	0	ENST00000377967.4:c.3695G>A	p.Gly1232Asp	p.G1232D	ENST00000377967	NM_021140.2	1232	gGc/gAc																																																																															
RAC1	5879	MSKCC	GRCh37	7	6441499	6441499	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	41	290	0	ENST00000356142.4:c.346T>C	p.Trp116Arg	p.W116R	ENST00000356142	NM_018890.3	116	Tgg/Cgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	178	618	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0019945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	210	575	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865726	57865726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144893788		P-0019945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	190	907	0	ENST00000228682.2:c.3203G>A	p.Arg1068Gln	p.R1068Q	ENST00000228682	NM_005269.2	1068	cGg/cAg																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182028	38182028	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	185	635	0	ENST00000396334.3:c.652T>G	p.Trp218Gly	p.W218G	ENST00000396334	NM_002468.4	218	Tgg/Ggg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	56	602	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	66	872	0	ENST00000269305.4:c.380C>A	p.Ser127Tyr	p.S127Y	ENST00000269305	NM_001126112.2	127	tCc/tAc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026297	48026297	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	30	460	0	ENST00000234420.5:c.1175A>T	p.Asp392Val	p.D392V	ENST00000234420	NM_000179.2	392	gAt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974751	21974752	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	A			P-0019946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	51	401	0	ENST00000304494.5:c.75_76delinsT	p.Glu26ArgfsTer27	p.E26Rfs*27	ENST00000304494	NM_000077.4	25	gtAGag/gtTag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115956	8115956	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	125	518	0	ENST00000346208.3:c.1305delC	p.Ser436ProfsTer39	p.S436Pfs*39	ENST00000346208		434	caC/ca																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575023	64575023	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0019947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	107	493	1	ENST00000337652.1:c.798+1G>A		p.X266_splice	ENST00000337652	NM_130803.2	266																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151879331	151879331	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	499	624	0	ENST00000262189.6:c.5614C>T	p.Gln1872Ter	p.Q1872*	ENST00000262189	NM_170606.2	1872	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	145	652	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	120	632	10	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46740279	46740279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150315374		P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	104	610	0	ENST00000371975.4:c.1759C>T	p.Arg587Trp	p.R587W	ENST00000371975	NM_003579.3	587	Cgg/Tgg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	112	683	3	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	121	695	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	118	542	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	109	688	3	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144146	11144146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	132	789	1	ENST00000344626.4:c.3727C>T	p.Arg1243Trp	p.R1243W	ENST00000344626	NM_003072.3	1243	Cgg/Tgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29553478	29553478	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	127	750	2	ENST00000358273.4:c.2033delC	p.Pro678ArgfsTer10	p.P678Rfs*10	ENST00000358273	NM_001042492.2	676	aCc/ac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521114	187521114	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760053140		P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	115	571	1	ENST00000441802.2:c.12041C>T	p.Thr4014Met	p.T4014M	ENST00000441802	NM_005245.3	4014	aCg/aTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	38	156	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028638	12028638	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	114	627	0	ENST00000353533.5:c.841C>T	p.Arg281Ter	p.R281*	ENST00000353533	NM_003010.3	281	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	21	113	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730075	41730075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	95	696	0	ENST00000242208.4:c.454C>T	p.Arg152Cys	p.R152C	ENST00000242208	NM_002192.2	152	Cgt/Tgt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399387	139399387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	160	810	2	ENST00000277541.6:c.4756C>T	p.Arg1586Cys	p.R1586C	ENST00000277541	NM_017617.3	1586	Cgc/Tgc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	203	896	10	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	119	562	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	129	888	2	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	124	749	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	148	922	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
MSH3	4437	MSKCC	GRCh37	5	80064780	80064780	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	125	734	0	ENST00000265081.6:c.2216del	p.Asn739IlefsTer7	p.N739Ifs*7	ENST00000265081	NM_002439.4	737	ctA/ct																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229256	36229256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	140	825	2	ENST00000222270.7:c.7946G>A	p.Arg2649His	p.R2649H	ENST00000222270	NM_014727.1	2649	cGc/cAc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355047	73355047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	101	684	1	ENST00000377767.4:c.323G>A	p.Arg108His	p.R108H	ENST00000377767	NM_014953.3	108	cGc/cAc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17116976	17116976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	100	596	2	ENST00000285071.4:c.1733G>A	p.Arg578Gln	p.R578Q	ENST00000285071	NM_144997.5	578	cGg/cAg																																																																															
NF1	4763	MSKCC	GRCh37	17	29654765	29654765	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	87	623	4	ENST00000358273.4:c.5521del	p.Gln1841AsnfsTer22	p.Q1841Nfs*22	ENST00000358273	NM_001042492.2	1839	atC/at																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244440	41244440	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	138	761	1	ENST00000357654.3:c.3108del	p.Phe1036LeufsTer12	p.F1036Lfs*12	ENST00000357654	NM_007294.3	1036	ttT/tt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760703	59760703	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	56	828	0	ENST00000259008.2:c.3704A>C	p.Lys1235Thr	p.K1235T	ENST00000259008	NM_032043.2	1235	aAa/aCa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602781	10602781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	151	832	1	ENST00000171111.5:c.797C>T	p.Ala266Val	p.A266V	ENST00000171111	NM_203500.1	266	gCg/gTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955122	17955122	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	114	911	0	ENST00000458235.1:c.105del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	35	ccC/cc																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47600946	47600946	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	45	643	0	ENST00000263735.4:c.185-1G>C		p.X62_splice	ENST00000263735	NM_002354.2	62																																																																																
REL	5966	MSKCC	GRCh37	2	61145736	61145736	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	90	493	0	ENST00000295025.8:c.852del	p.Asp285IlefsTer24	p.D285Ifs*24	ENST00000295025	NM_002908.2	283	gAa/ga																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046961	128046961	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	137	775	0	ENST00000285398.2:c.774T>A	p.Asp258Glu	p.D258E	ENST00000285398	NM_000122.1	258	gaT/gaA																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212589875	212589875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	126	791	1	ENST00000342788.4:c.667G>A	p.Gly223Arg	p.G223R	ENST00000342788	NM_005235.2	223	Gga/Aga																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46262906	46262906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	138	720	2	ENST00000371998.3:c.1079G>A	p.Arg360Gln	p.R360Q	ENST00000371998		360	cGa/cAa																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62321719	62321719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	122	789	0	ENST00000508582.2:c.2410C>A	p.Pro804Thr	p.P804T	ENST00000508582		804	Cct/Act																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980497	1980497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	173	891	1	ENST00000382891.5:c.3959G>A	p.Arg1320Gln	p.R1320Q	ENST00000382891	NM_133335.3	1320	cGg/cAg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201750	66201750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	96	729	0	ENST00000273854.3:c.2752G>A	p.Glu918Lys	p.E918K	ENST00000273854	NM_004439.5	918	Gag/Aag																																																																															
E2F3	1871	MSKCC	GRCh37	6	20481637	20481637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	84	521	0	ENST00000346618.3:c.710del	p.Asn237ThrfsTer27	p.N237Tfs*27	ENST00000346618	NM_001949.4	236	Aaa/aa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553432	106553432	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	73	441	0	ENST00000369096.4:c.1397T>C	p.Leu466Pro	p.L466P	ENST00000369096	NM_001198.3	466	cTc/cCc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152201882	152201882	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	84	722	0	ENST00000206249.3:c.736T>C	p.Tyr246His	p.Y246H	ENST00000206249	NM_000125.3	246	Tac/Cac																																																																															
MET	4233	MSKCC	GRCh37	7	116395478	116395478	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45602940		P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	130	685	0	ENST00000397752.3:c.1771C>T	p.Arg591Trp	p.R591W	ENST00000397752	NM_000245.2	591	Cgg/Tgg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342764	87342764	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	82	711	0	ENST00000277120.3:c.1049A>C	p.Asn350Thr	p.N350T	ENST00000277120		350	aAt/aCt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932356	39932356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	188	463	0	ENST00000378444.4:c.2243G>A	p.Arg748Gln	p.R748Q	ENST00000378444	NM_001123385.1	748	cGg/cAg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	98	637	0				ENST00000310581	NM_198253.2																																																																																	
FGFR4	2264	MSKCC	GRCh37	5	176520456	176520456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	192	756	1	ENST00000292408.4:c.1301G>T	p.Arg434Leu	p.R434L	ENST00000292408	NM_213647.1	434	cGa/cTa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041636	47041636	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	202	910	1	ENST00000329236.7:c.1627C>T	p.Gln543Ter	p.Q543*	ENST00000329236	NM_001204466.1	543	Cag/Tag																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4117439	4117439	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202220799		P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	105	655	1	ENST00000262948.5:c.281C>T	p.Ser94Leu	p.S94L	ENST00000262948	NM_030662.3	94	tCg/tTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221228	1221228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	225	786	0	ENST00000326873.7:c.751G>T	p.Gly251Cys	p.G251C	ENST00000326873	NM_000455.4	251	Ggt/Tgt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780921	9780921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	186	807	1	ENST00000377346.4:c.1643G>A	p.Arg548Gln	p.R548Q	ENST00000377346	NM_005026.3	548	cGg/cAg																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518334	204518334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	175	639	0	ENST00000367182.3:c.997G>T	p.Asp333Tyr	p.D333Y	ENST00000367182	NM_001278516.1	333	Gat/Tat																																																																															
CTCF	10664	MSKCC	GRCh37	16	67671614	67671614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	104	640	0	ENST00000264010.4:c.2023G>A	p.Asp675Asn	p.D675N	ENST00000264010	NM_006565.3	675	Gac/Aac																																																																															
SDHA	6389	MSKCC	GRCh37	5	233702	233702	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	179	602	2	ENST00000264932.6:c.1006G>T	p.Asp336Tyr	p.D336Y	ENST00000264932	NM_004168.2	336	Gac/Tac																																																																															
TERT	7015	MSKCC	GRCh37	5	1279436	1279436	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	200	841	0	ENST00000310581.5:c.2100G>T	p.Gln700His	p.Q700H	ENST00000310581	NM_198253.2	700	caG/caT																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453135	+	missense_variant	Missense_Mutation	DNP	TC	TC	CA			P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	215	766	1	ENST00000288602.6:c.1800_1801delinsTG	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	600	gtGAaa/gtTGaa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370795	55370795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	56	636	1	ENST00000297316.4:c.97G>T	p.Ala33Ser	p.A33S	ENST00000297316	NM_022454.3	33	Gcc/Tcc																																																																															
ATRX	546	MSKCC	GRCh37	X	76813050	76813050	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	244	725	0	ENST00000373344.5:c.6571G>C	p.Asp2191His	p.D2191H	ENST00000373344	NM_000489.3	2191	Gat/Cat																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0019952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	129	624	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252856	36252857	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	106	541	0	ENST00000300305.3:c.505dupA	p.Arg169LysfsTer44	p.R169Kfs*44	ENST00000300305		169	aga/aAga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061261	38061264	+	missense_variant	Missense_Mutation	ONP	TAGG	TAGG	GAGC			P-0019952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	141	815	0	ENST00000250448.2:c.725_728delinsGCTC	p.Ser242_Tyr243delinsCysSer	p.S242_Y243delinsCS	ENST00000250448	NM_004496.3	242	tCCTAc/tGCTCc																																																																															
NF1	4763	MSKCC	GRCh37	17	29486102	29486102	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0019952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	124	660	0	ENST00000358273.4:c.279T>A	p.Cys93Ter	p.C93*	ENST00000358273	NM_001042492.2	93	tgT/tgA																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457335	67457337	+	missense_variant	Missense_Mutation	ONP	ACG	ACG	GCT			P-0019952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	145	693	2	ENST00000327367.4:c.309_311delinsGCT	p.Arg104Leu	p.R104L	ENST00000327367	NM_005902.3	103	ctACGg/ctGCTg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028638	12028638	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	245	729	1	ENST00000353533.5:c.841C>T	p.Arg281Ter	p.R281*	ENST00000353533	NM_003010.3	281	Cga/Tga																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38277157	38277157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	6668	925	3	ENST00000425967.3:c.1271C>T	p.Ser424Leu	p.S424L	ENST00000425967	NM_001174067.1	424	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	45	763	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0019956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	110	825	1	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0019957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	447	874	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118363809	118363809	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	177	728	1	ENST00000534358.1:c.5042A>T	p.Glu1681Val	p.E1681V	ENST00000534358	NM_005933.3	1681	gAg/gTg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589732	28589732	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0019957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	219	708	0	ENST00000241453.7:c.2648C>G	p.Ser883Ter	p.S883*	ENST00000241453	NM_004119.2	883	tCa/tGa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845842	72845842	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	192	815	1	ENST00000268489.5:c.3625A>G	p.Lys1209Glu	p.K1209E	ENST00000268489	NM_006885.3	1209	Aag/Gag																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750437	57750438	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	172	728	0	ENST00000274289.3:c.2030dup	p.Asn678GlufsTer8	p.N678Efs*8	ENST00000274289	NM_006622.3	677	ctg/ctTg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821545	32821545	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	224	885	0	ENST00000354258.4:c.49C>G	p.Pro17Ala	p.P17A	ENST00000354258	NM_000593.5	17	Ccg/Gcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0019958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	181	939	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PGR	5241	MSKCC	GRCh37	11	100998273	100998273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	27	418	1	ENST00000325455.5:c.1529C>T	p.Ala510Val	p.A510V	ENST00000325455	NM_001202474.3	510	gCg/gTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440697	56440698	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	183	887	0	ENST00000407977.2:c.520dup	p.Glu174GlyfsTer14	p.E174Gfs*14	ENST00000407977		174	gag/gGag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540481	187540481	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0019958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	50	561	0	ENST00000441802.2:c.7259C>G	p.Ser2420Ter	p.S2420*	ENST00000441802	NM_005245.3	2420	tCa/tGa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0019959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	12	764	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	9	693	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0019960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	105	922	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096688	178096688	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	42	590	0	ENST00000397062.3:c.643A>C	p.Ser215Arg	p.S215R	ENST00000397062	NM_006164.4	215	Agt/Cgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	268	646	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1219381	1219381	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	232	815	0	ENST00000326873.7:c.433G>T	p.Glu145Ter	p.E145*	ENST00000326873	NM_000455.4	145	Gag/Tag																																																																															
AKT1	207	MSKCC	GRCh37	14	105239812	105239812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	42	792	1	ENST00000349310.3:c.808G>A	p.Val270Met	p.V270M	ENST00000349310	NM_001014432.1	270	Gtg/Atg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52582249	52582249	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0019961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	40	263	0	ENST00000394830.3:c.4579C>T	p.Arg1527Ter	p.R1527*	ENST00000394830	NM_018313.4	1527	Cga/Tga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52623218	52623218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	55	571	1	ENST00000394830.3:c.2833C>T	p.Arg945Cys	p.R945C	ENST00000394830	NM_018313.4	945	Cgc/Tgc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52623229	52623229	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0019961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	41	513	0	ENST00000394830.3:c.2822C>G	p.Ser941Ter	p.S941*	ENST00000394830	NM_018313.4	941	tCa/tGa																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15809088	15809088	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	141	637	0	ENST00000307771.7:c.73G>T	p.Glu25Ter	p.E25*	ENST00000307771	NM_005089.3	25	Gag/Tag																																																																															
ARAF	369	MSKCC	GRCh37	X	47428185	47428185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	39	820	0	ENST00000377045.4:c.1145C>T	p.Thr382Ile	p.T382I	ENST00000377045	NM_001654.4	382	aCa/aTa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143994	11143994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	177	578	3	ENST00000358026.2:c.3575G>A	p.Arg1192His	p.R1192H	ENST00000358026	NM_001128849.1	1192	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0019964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	134	596	0	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0019964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	179	576	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0019964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	426	630	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29553486	29553486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	158	637	0	ENST00000358273.4:c.2035A>G	p.Ile679Val	p.I679V	ENST00000358273	NM_001042492.2	679	Att/Gtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0019965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	409	790	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	578	571	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373574	118373574	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	270	503	0	ENST00000534358.1:c.6967G>T	p.Ala2323Ser	p.A2323S	ENST00000534358	NM_005933.3	2323	Gca/Tca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	23	616	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	242	751	2	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs149680468		P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	37	615	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724988	162724988	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	137	566	0	ENST00000367921.3:c.460G>C	p.Asp154His	p.D154H	ENST00000367921	NM_006182.2	154	Gac/Cac																																																																															
KDM5A	5927	MSKCC	GRCh37	12	443562	443562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	105	731	0	ENST00000399788.2:c.1335G>C	p.Leu445Phe	p.L445F	ENST00000399788	NM_001042603.1	445	ttG/ttC																																																																															
KDM5A	5927	MSKCC	GRCh37	12	493320	493320	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	87	489	1	ENST00000399788.2:c.244-1G>A		p.X82_splice	ENST00000399788	NM_001042603.1	82																																																																																
IRS2	8660	MSKCC	GRCh37	13	110434745	110434745	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	149	640	0	ENST00000375856.3:c.3656C>A	p.Pro1219Gln	p.P1219Q	ENST00000375856	NM_003749.2	1219	cCg/cAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781857	3781857	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	188	959	0	ENST00000262367.5:c.4810A>G	p.Asn1604Asp	p.N1604D	ENST00000262367	NM_004380.2	1604	Aac/Gac																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45423027	45423027	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	82	426	0	ENST00000262160.6:c.101A>G	p.Asn34Ser	p.N34S	ENST00000262160	NM_005901.5	34	aAt/aGt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449496	149449496	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	135	740	1	ENST00000286301.3:c.1450G>C	p.Glu484Gln	p.E484Q	ENST00000286301	NM_005211.3	484	Gag/Cag																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005035	150005035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	77	576	0	ENST00000253339.5:c.1190C>T	p.Pro397Leu	p.P397L	ENST00000253339		397	cCt/cTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140476740	140476740	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	142	509	0	ENST00000288602.6:c.1666A>T	p.Ile556Phe	p.I556F	ENST00000288602	NM_004333.4	556	Att/Ttt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	50	566	0	ENST00000304494.5:c.151-2A>C		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	882	545	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0019969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	128	689	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806092	1806092	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	152	777	0	ENST00000260795.2:c.1111A>T	p.Ser371Cys	p.S371C	ENST00000260795		371	Agt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0019970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	294	847	1	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948799	71948799	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	258	826	1	ENST00000298229.2:c.3514del	p.Arg1172AlafsTer30	p.R1172Afs*30	ENST00000298229	NM_001567.3	1171	Ccc/cc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436553	49436553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	265	744	1	ENST00000301067.7:c.5753G>A	p.Arg1918His	p.R1918H	ENST00000301067	NM_003482.3	1918	cGt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444220	49444220	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	350	1045	0	ENST00000301067.7:c.3151G>C	p.Val1051Leu	p.V1051L	ENST00000301067	NM_003482.3	1051	Gtt/Ctt																																																																															
RB1	5925	MSKCC	GRCh37	13	48951086	48951086	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	189	517	0	ENST00000267163.4:c.1248del	p.Arg418GlufsTer2	p.R418Efs*2	ENST00000267163	NM_000321.2	416	ctG/ct																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569764	95569764	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	129	404	0	ENST00000343455.3:c.3969A>C	p.Leu1323Phe	p.L1323F	ENST00000343455	NM_177438.2	1323	ttA/ttC																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426713	212426714	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0019970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	216	784	1	ENST00000342788.4:c.2401_2402delinsAT	p.His801Ile	p.H801I	ENST00000342788	NM_005235.2	801	CAt/ATt																																																																															
TERT	7015	MSKCC	GRCh37	5	1293556	1293556	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	600	894	0	ENST00000310581.5:c.1445A>G	p.His482Arg	p.H482R	ENST00000310581	NM_198253.2	482	cAc/cGc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981585	70981585	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	316	1055	0	ENST00000276594.2:c.511C>A	p.Pro171Thr	p.P171T	ENST00000276594	NM_024504.3	171	Cct/Act																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739455	145739455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	251	775	0	ENST00000428558.2:c.1915G>C	p.Gly639Arg	p.G639R	ENST00000428558	NM_004260.3	639	Ggc/Cgc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449786	8449786	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	231	890	0	ENST00000356435.5:c.3927G>T	p.Glu1309Asp	p.E1309D	ENST00000356435		1309	gaG/gaT																																																																															
PAX5	5079	MSKCC	GRCh37	9	36840615	36840615	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	282	635	0	ENST00000358127.4:c.1118G>C	p.Ser373Thr	p.S373T	ENST00000358127	NM_001280556.1	373	aGc/aCc																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128434674	128434674	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	299	813	0	ENST00000265960.3:c.180G>T	p.Glu60Asp	p.E60D	ENST00000265960	NM_001006617.1	60	gaG/gaT																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52702564	52702565	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	T			P-0019970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	228	786	0	ENST00000394830.3:c.333_334delinsA	p.Leu112Ter	p.L112*	ENST00000394830	NM_018313.4	111	ttGCtg/ttAtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	79	728	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	115	1046	1	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400147	139400147	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	60	935	3	ENST00000277541.6:c.4201G>T	p.Gly1401Trp	p.G1401W	ENST00000277541	NM_017617.3	1401	Ggg/Tgg																																																																															
STK11	6794	MSKCC	GRCh37	19	1219381	1219381	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	145	931	1	ENST00000326873.7:c.433G>T	p.Glu145Ter	p.E145*	ENST00000326873	NM_000455.4	145	Gag/Tag																																																																															
TET1	80312	MSKCC	GRCh37	10	70426876	70426877	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0019978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	93	721	1	ENST00000373644.4:c.4536_4537delinsCT	p.Ala1513Ser	p.A1513S	ENST00000373644	NM_030625.2	1512	acTGct/acCTct																																																																															
ATM	472	MSKCC	GRCh37	11	108129804	108129804	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0019978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	85	527	0	ENST00000278616.4:c.2466+2T>G		p.X822_splice	ENST00000278616	NM_000051.3	822																																																																																
FLT1	2321	MSKCC	GRCh37	13	28896966	28896966	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	110	761	3	ENST00000282397.4:c.2914C>A	p.Gln972Lys	p.Q972K	ENST00000282397	NM_002019.4	972	Cag/Aag																																																																															
FLT1	2321	MSKCC	GRCh37	13	29002027	29002027	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	122	672	0	ENST00000282397.4:c.1138T>C	p.Ser380Pro	p.S380P	ENST00000282397	NM_002019.4	380	Tct/Cct																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41239723	41239723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	61	942	0	ENST00000379561.5:c.627G>T	p.Trp209Cys	p.W209C	ENST00000379561	NM_002015.3	209	tgG/tgT																																																																															
DIS3	22894	MSKCC	GRCh37	13	73347853	73347853	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	73	520	0	ENST00000377767.4:c.1208A>T	p.Asp403Val	p.D403V	ENST00000377767	NM_014953.3	403	gAt/gTt																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30129797	30129797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	112	781	0	ENST00000263025.4:c.416G>A	p.Ser139Asn	p.S139N	ENST00000263025	NM_002746.2	139	aGc/aAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29553570	29553570	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	40	266	0	ENST00000358273.4:c.2119A>T	p.Met707Leu	p.M707L	ENST00000358273	NM_001042492.2	707	Atg/Ttg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78921128	78921128	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	120	739	0	ENST00000306801.3:c.3242G>T	p.Cys1081Phe	p.C1081F	ENST00000306801	NM_020761.2	1081	tGc/tTc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279691	18279691	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	95	651	0	ENST00000222254.8:c.1964A>T	p.Tyr655Phe	p.Y655F	ENST00000222254	NM_005027.3	655	tAc/tTc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484768	57484768	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	79	822	0	ENST00000371085.3:c.748A>T	p.Ser250Cys	p.S250C	ENST00000371085	NM_000516.4	250	Agc/Tgc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134825326	134825326	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	76	594	0	ENST00000398015.3:c.842C>G	p.Ala281Gly	p.A281G	ENST00000398015	NM_004441.4	281	gCt/gGt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38982115	38982115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	73	578	0	ENST00000357387.3:c.607G>A	p.Ala203Thr	p.A203T	ENST00000357387	NM_152756.3	203	Gcc/Acc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982018	93982018	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0019978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	66	442	0	ENST00000369303.4:c.1447A>T	p.Lys483Ter	p.K483*	ENST00000369303	NM_004440.3	483	Aaa/Taa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5029906	5029906	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	48	642	0	ENST00000381652.3:c.350G>A	p.Arg117Lys	p.R117K	ENST00000381652	NM_004972.3	117	aGa/aAa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87549130	87549130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	59	828	0	ENST00000277120.3:c.1687G>A	p.Gly563Arg	p.G563R	ENST00000277120		563	Gga/Aga																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209591	98209591	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs147067171		P-0019978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	59	688	0	ENST00000331920.6:c.3947A>G	p.Tyr1316Cys	p.Y1316C	ENST00000331920	NM_000264.3	1316	tAc/tGc																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858125	152858125	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	125	501	2	ENST00000406277.2:c.490G>C	p.Val164Leu	p.V164L	ENST00000406277	NM_152274.4	164	Gtt/Ctt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389363	8389364	+	missense_variant	Missense_Mutation	DNP	AC	AC	GG			P-0019978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	54	704	0	ENST00000356435.5:c.4254_4255delinsCC	p.Tyr1419His	p.Y1419H	ENST00000356435		1418	ggGTat/ggCCat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249013	55249014	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACCCCC			P-0019981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	994	785	2	ENST00000275493.2:c.2314_2319dupCCCCAC	p.Pro772_His773dup	p.P772_H773dup	ENST00000275493	NM_005228.3	772	aac/aACCCCCac																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0019981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	225	563	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012462	29012462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	277	740	0	ENST00000282397.4:c.409G>A	p.Glu137Lys	p.E137K	ENST00000282397	NM_002019.4	137	Gag/Aag																																																																															
FLCN	201163	MSKCC	GRCh37	17	17118350	17118350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1703	188	1064	1	ENST00000285071.4:c.1487C>T	p.Ser496Phe	p.S496F	ENST00000285071	NM_144997.5	496	tCt/tTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453149	140453149	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	59	734	0	ENST00000288602.6:c.1786G>C	p.Gly596Arg	p.G596R	ENST00000288602	NM_004333.4	596	Ggt/Cgt																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599303	28599303	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	58	868	0	ENST00000253063.3:c.749G>A	p.Gly250Glu	p.G250E	ENST00000253063	NM_031459.4	250	gGg/gAg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120479951	120479951	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	74	796	0	ENST00000256646.2:c.3476A>G	p.Gln1159Arg	p.Q1159R	ENST00000256646	NM_024408.3	1159	cAg/cGg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206658577	206658577	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	61	652	0	ENST00000367120.3:c.1550A>T	p.Gln517Leu	p.Q517L	ENST00000367120	NM_014002.3	517	cAg/cTg																																																																															
ATM	472	MSKCC	GRCh37	11	108236085	108236085	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	61	757	0	ENST00000278616.4:c.9021A>T	p.Glu3007Asp	p.E3007D	ENST00000278616	NM_000051.3	3007	gaA/gaT																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18544075	18544075	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	35	507	0	ENST00000266497.5:c.1892G>T	p.Gly631Val	p.G631V	ENST00000266497		631	gGg/gTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437356	110437356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	29	163	0	ENST00000375856.3:c.1045G>C	p.Ala349Pro	p.A349P	ENST00000375856	NM_003749.2	349	Gcc/Ccc																																																																															
CD276	80381	MSKCC	GRCh37	15	73996248	73996248	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	16	198	0	ENST00000318443.5:c.982C>T	p.Gln328Ter	p.Q328*	ENST00000318443	NM_001024736.1	328	Cag/Tag																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45394747	45394747	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	80	700	1	ENST00000262160.6:c.602del	p.Pro201GlnfsTer37	p.P201Qfs*37	ENST00000262160	NM_005901.5	201	cCa/ca																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185165599	185165599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	38	620	0	ENST00000265026.3:c.874G>A	p.Ala292Thr	p.A292T	ENST00000265026	NM_004721.4	292	Gcg/Acg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554338	141554338	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	79	977	0	ENST00000220592.5:c.1813del	p.Asp605MetfsTer90	p.D605Mfs*90	ENST00000220592	NM_012154.3	605	Gat/at																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504275	8504275	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	47	675	0	ENST00000356435.5:c.1808G>C	p.Arg603Thr	p.R603T	ENST00000356435		603	aGa/aCa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045030	47045030	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	92	960	1	ENST00000329236.7:c.2121+1G>T		p.X707_splice	ENST00000329236	NM_001204466.1	707																																																																																
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	137	889	0	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95557387	95557387	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	79	625	0	ENST00000343455.3:c.5587G>C	p.Glu1863Gln	p.E1863Q	ENST00000343455	NM_177438.2	1863	Gaa/Caa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938891	178938891	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	28	322	0	ENST00000263967.3:c.2133G>C	p.Lys711Asn	p.K711N	ENST00000263967	NM_006218.2	711	aaG/aaC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242482	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAGCAAC	TTAAGAGAAGCAAC	CCGAG			P-0019984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	193	782	2	ENST00000275493.2:c.2239_2252delinsCCGAG	p.Leu747_Thr751delinsProArg	p.L747_T751delinsPR	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAACa/CCGAGa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932116	39932123	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGCAAA	GCTGCAAA	-			P-0019984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	103	841	0	ENST00000378444.4:c.2476_2483del	p.Phe826ArgfsTer8	p.F826Rfs*8	ENST00000378444	NM_001123385.1	826	TTTGCAGCa/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7576888	7576888	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0019987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	145	897	1	ENST00000269305.4:c.958A>T	p.Lys320Ter	p.K320*	ENST00000269305	NM_001126112.2	320	Aag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539951	187539951	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777631605		P-0019987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	86	552	0	ENST00000441802.2:c.7789C>T	p.Arg2597Ter	p.R2597*	ENST00000441802	NM_005245.3	2597	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118368660	118368660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	135	519	0	ENST00000534358.1:c.5674C>T	p.Arg1892Cys	p.R1892C	ENST00000534358	NM_005933.3	1892	Cgt/Tgt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060903	38060904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0019987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	106	554	0	ENST00000250448.2:c.1084_1085dup	p.Gly363ProfsTer27	p.G363Pfs*27	ENST00000250448	NM_004496.3	362	tcc/tcTCc																																																																															
CASP8	841	MSKCC	GRCh37	2	202131462	202131462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	58	758	0	ENST00000358485.4:c.430G>A	p.Glu144Lys	p.E144K	ENST00000358485	NM_001080125.1	144	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0019989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	206	568	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0019989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	268	706	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976706	2976706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	222	521	0	ENST00000396946.4:c.1306C>T	p.Arg436Trp	p.R436W	ENST00000396946	NM_032415.4	436	Cgg/Tgg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468071	50468071	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	36	460	0	ENST00000331340.3:c.1306G>A	p.Asp436Asn	p.D436N	ENST00000331340	NM_006060.4	436	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579401	7579401	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	241	758	0	ENST00000269305.4:c.286del	p.Ser96LeufsTer27	p.S96Lfs*27	ENST00000269305	NM_001126112.2	96	Tct/ct																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612974	228612974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	153	461	0	ENST00000366696.1:c.53G>A	p.Arg18His	p.R18H	ENST00000366696	NM_003493.2	18	cGc/cAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121936	2121936	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0019989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	138	678	1	ENST00000219476.3:c.2097+1G>T		p.X699_splice	ENST00000219476	NM_000548.3	699																																																																																
APC	324	MSKCC	GRCh37	5	112175511	112175512	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0019989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	212	504	0	ENST00000257430.4:c.4221_4222del	p.Ser1407ArgfsTer15	p.S1407Rfs*15	ENST00000257430	NM_000038.5	1407	aGT/a																																																																															
ROS1	6098	MSKCC	GRCh37	6	117725526	117725526	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	38	622	0	ENST00000368508.3:c.355T>G	p.Trp119Gly	p.W119G	ENST00000368508	NM_002944.2	119	Tgg/Ggg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128268639	128268639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	277	757	1	ENST00000265960.3:c.1016G>A	p.Ser339Asn	p.S339N	ENST00000265960	NM_001006617.1	339	aGc/aAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0020011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	229	533	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29559089	29559089	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs1131691089		P-0020011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	39	83	0	ENST00000358273.4:c.3198-2A>G		p.X1066_splice	ENST00000358273	NM_001042492.2	1066																																																																																
RBM10	8241	MSKCC	GRCh37	X	47045190	47045190	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0020011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	150	337	2	ENST00000329236.7:c.2196+1G>T		p.X732_splice	ENST00000329236	NM_001204466.1	732																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9857344	9857344	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	205	447	0	ENST00000330684.3:c.4057A>G	p.Arg1353Gly	p.R1353G	ENST00000330684	NM_001134407.1	1353	Agg/Ggg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61721109	61721109	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	463	703	0	ENST00000401558.2:c.1165T>G	p.Ser389Ala	p.S389A	ENST00000401558	NM_003400.3	389	Tct/Gct																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091121	29091121	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	346	722	0	ENST00000328354.6:c.1369G>T	p.Glu457Ter	p.E457*	ENST00000328354	NM_007194.3	457	Gag/Tag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509100	66509100	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	77	541	1	ENST00000273854.3:c.227T>A	p.Ile76Asn	p.I76N	ENST00000273854	NM_004439.5	76	aTt/aAt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910333	29910384	+	frameshift_variant,start_lost	Frame_Shift_Del	DEL	GGCCGTCATGGCGCCCCGAACCCTCCTCCTGCTACTCTCGGGGGCCCTGGCC	GGCCGTCATGGCGCCCCGAACCCTCCTCCTGCTACTCTCGGGGGCCCTGGCC	-			P-0020011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	217	752	0	ENST00000376809.5:c.3_54del	p.Met1_?18	p.M1_?18	ENST00000376809	NM_002116.7	1	atGGCCGTCATGGCGCCCCGAACCCTCCTCCTGCTACTCTCGGGGGCCCTGGCC/at																																																																															
TEK	7010	MSKCC	GRCh37	9	27180315	27180315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	131	542	1	ENST00000380036.4:c.979C>T	p.Gln327Ter	p.Q327*	ENST00000380036	NM_000459.3	327	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	20	433	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78433848	78433848	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0020014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	40	362	0	ENST00000370768.2:c.250+1del		p.X84_splice	ENST00000370768	NM_003902.3	84																																																																																
ATM	472	MSKCC	GRCh37	11	108236153	108236153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	45	605	2	ENST00000278616.4:c.9089G>T	p.Gly3030Val	p.G3030V	ENST00000278616	NM_000051.3	3030	gGa/gTa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32972589	32972590	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	43	464	0	ENST00000380152.3:c.9945dup	p.Glu3316ArgfsTer11	p.E3316Rfs*11	ENST00000380152		3313	-/A																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73774943	73774943	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	29	364	0	ENST00000254810.4:c.230A>C	p.Gln77Pro	p.Q77P	ENST00000254810	NM_005324.3	77	cAg/cCg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600330	10600330	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	42	509	0	ENST00000171111.5:c.1525G>C	p.Gly509Arg	p.G509R	ENST00000171111	NM_203500.1	509	Ggg/Cgg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384598	31384598	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0020014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	46	552	1	ENST00000328111.2:c.1300G>T	p.Gly434Cys	p.G434C	ENST00000328111	NM_006892.3	434	Ggc/Tgc																																																																															
KDR	3791	MSKCC	GRCh37	4	55964318	55964318	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	34	379	0	ENST00000263923.4:c.2495A>G	p.Asp832Gly	p.D832G	ENST00000263923	NM_002253.2	832	gAc/gGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874355	151874355	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	33	406	0	ENST00000262189.6:c.8183A>T	p.Lys2728Met	p.K2728M	ENST00000262189	NM_170606.2	2728	aAg/aTg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372385	55372385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	49	747	3	ENST00000297316.4:c.1075G>T	p.Asp359Tyr	p.D359Y	ENST00000297316	NM_022454.3	359	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	95	526	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0020018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	138	598	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936103	178936103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	212	684	0	ENST00000263967.3:c.1645G>A	p.Asp549Asn	p.D549N	ENST00000263967	NM_006218.2	549	Gat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952152	178952159	+	coding_sequence_variant,3_prime_UTR_variant	Frame_Shift_Del	DEL	AAAAGATA	AAAAGATA	-			P-0020020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	79	305	0	ENST00000263967.3:c.*1_*8delAAAGATAA		p.*1fs*	ENST00000263967	NM_006218.2	1069																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0020022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	119	437	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45872214	45872214	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	66	563	0	ENST00000391945.4:c.220T>C	p.Ser74Pro	p.S74P	ENST00000391945	NM_000400.3	74	Tca/Cca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717695	89717696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	67	488	0	ENST00000371953.3:c.723dupT	p.Glu242Ter	p.E242*	ENST00000371953	NM_000314.4	240	-/T																																																																															
RAD21	5885	MSKCC	GRCh37	8	117859924	117859924	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139935751		P-0020022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	131	251	0	ENST00000297338.2:c.1711C>T	p.Leu571Phe	p.L571F	ENST00000297338	NM_006265.2	571	Ctt/Ttt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72863714	72863716	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0020022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	144	561	0	ENST00000268489.5:c.3491_3493del	p.Ala1164del	p.A1164del	ENST00000268489	NM_006885.3	1164	gCTGat/gat																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351644	89351644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	87	666	0	ENST00000301030.4:c.1306G>A	p.Gly436Ser	p.G436S	ENST00000301030	NM_001256183.1	436	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577088	7577104	+	protein_altering_variant	In_Frame_Del	DEL	TGCGCCGGTCTCTCCCA	TGCGCCGGTCTCTCCCA	GG			P-0020022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	161	653	4	ENST00000269305.4:c.834_850delinsCC	p.Gly279_Thr284delinsPro	p.G279_T284delinsP	ENST00000269305	NM_001126112.2	278	ccTGGGAGAGACCGGCGCAca/ccCCca																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981911	70981911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	73	636	1	ENST00000276594.2:c.185C>A	p.Ala62Asp	p.A62D	ENST00000276594	NM_024504.3	62	gCt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0020024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	104	600	3	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112111384	112111384	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	108	526	0	ENST00000257430.4:c.481C>T	p.Gln161Ter	p.Q161*	ENST00000257430	NM_000038.5	161	Caa/Taa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438108	110438108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	146	701	0	ENST00000375856.3:c.293G>A	p.Cys98Tyr	p.C98Y	ENST00000375856	NM_003749.2	98	tGc/tAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42026780	42026817	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATAAATTACAAGGTCAGAATGAAAACTAGATCTTAAC	GATAAATTACAAGGTCAGAATGAAAACTAGATCTTAAC	-			P-0020024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	94	525	1	ENST00000219905.7:c.3904_3916+25del		p.X1302_splice	ENST00000219905	NM_001164273.1	1302																																																																																
ETV1	2115	MSKCC	GRCh37	7	13971324	13971324	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	117	506	2	ENST00000405192.2:c.605C>A	p.Thr202Lys	p.T202K	ENST00000405192	NM_001163147.1	202	aCg/aAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0020026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	125	344	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0020026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	183	673	0	ENST00000269305.4:c.377A>C	p.Tyr126Ser	p.Y126S	ENST00000269305	NM_001126112.2	126	tAc/tCc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15365013	15365013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	58	458	0	ENST00000263377.2:c.2108C>T	p.Ser703Leu	p.S703L	ENST00000263377	NM_058243.2	703	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0020027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	259	528	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0020028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	59	651	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	40	499	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	43	886	0	ENST00000374672.4:c.1225A>C	p.Lys409Gln	p.K409Q	ENST00000374672	NM_004235.4	409	Aag/Cag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106497	27106498	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	42	714	0	ENST00000324856.7:c.6109dup	p.Gln2037ProfsTer62	p.Q2037Pfs*62	ENST00000324856	NM_006015.4	2036	-/C																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041704	47041705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	59	391	0	ENST00000329236.7:c.1697dup	p.Thr567AspfsTer28	p.T567Dfs*28	ENST00000329236	NM_001204466.1	565	-/A																																																																															
CDH1	999	MSKCC	GRCh37	16	68835596	68835596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	123	447	2	ENST00000261769.5:c.187C>T	p.Arg63Ter	p.R63*	ENST00000261769	NM_004360.3	63	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0020030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	171	550	1	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099412	157099426	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAA	CAGCAGCAGCAGCAA	-			P-0020030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	44	368	0	ENST00000346085.5:c.363_377del	p.Gln127_Gln131del	p.Q127_Q131del	ENST00000346085	NM_020732.3	117	CAGCAGCAGCAGCAA/-																																																																															
CBFB	865	MSKCC	GRCh37	16	67070599	67070599	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	97	249	0	ENST00000412916.2:c.223G>T	p.Gly75Ter	p.G75*	ENST00000412916		75	Gga/Tga																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500570	149500570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377442091		P-0020030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	147	413	0	ENST00000261799.4:c.2467G>A	p.Val823Ile	p.V823I	ENST00000261799	NM_002609.3	823	Gtc/Atc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874908	151874908	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	85	283	1	ENST00000262189.6:c.7630C>T	p.Gln2544Ter	p.Q2544*	ENST00000262189	NM_170606.2	2544	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0020037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	37	436	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871116	12871116	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	28	259	0	ENST00000228872.4:c.343G>T	p.Ala115Ser	p.A115S	ENST00000228872	NM_004064.3	115	Gcg/Tcg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18478007	18478007	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	54	635	0	ENST00000266497.5:c.1247A>T	p.His416Leu	p.H416L	ENST00000266497		416	cAc/cTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207062	1207091	+	inframe_deletion	In_Frame_Del	DEL	GATGGGGGACCTGCTGGGGGAAGGCTCTTA	GATGGGGGACCTGCTGGGGGAAGGCTCTTA	-			P-0020037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	74	663	2	ENST00000326873.7:c.150_179del	p.Met51_Tyr60del	p.M51_Y60del	ENST00000326873	NM_000455.4	50	ctGATGGGGGACCTGCTGGGGGAAGGCTCTTAc/ctc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17941343	17941343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	52	609	1	ENST00000458235.1:c.3065C>A	p.Thr1022Asn	p.T1022N	ENST00000458235	NM_000215.3	1022	aCc/aAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041349	47041349	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0020037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	54	627	1	ENST00000329236.7:c.1460-1G>T		p.X487_splice	ENST00000329236	NM_001204466.1	487																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	54	1026	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552822		P-0020039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	38	999	1	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587780070		P-0020039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	122	1061	1	ENST00000269305.4:c.535C>A	p.His179Asn	p.H179N	ENST00000269305	NM_001126112.2	179	Cat/Aat																																																																															
CCND2	894	MSKCC	GRCh37	12	4387995	4387995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	113	950	2	ENST00000261254.3:c.481G>A	p.Glu161Lys	p.E161K	ENST00000261254	NM_001759.3	161	Gag/Aag																																																																															
NF1	4763	MSKCC	GRCh37	17	29509579	29509579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	42	1296	1	ENST00000358273.4:c.784C>T	p.Arg262Cys	p.R262C	ENST00000358273	NM_001042492.2	262	Cgt/Tgt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522336	176522336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	33	1059	0	ENST00000292408.4:c.1525G>A	p.Ala509Thr	p.A509T	ENST00000292408	NM_213647.1	509	Gcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938931	178938931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	69	469	0	ENST00000263967.3:c.2173G>A	p.Asp725Asn	p.D725N	ENST00000263967	NM_006218.2	725	Gat/Aat																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266711	198266711	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0020043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	75	557	0	ENST00000335508.6:c.2221A>G	p.Lys741Glu	p.K741E	ENST00000335508	NM_012433.2	741	Aag/Gag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115637	8115791	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGCCTGTGCATTTCAGAGGCAGCAAAAAAGTAAAAAAAAAAAAAAAAAATTGATCTTTGTTTAGATTAACAGACCCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCAT	GAGCCTGTGCATTTCAGAGGCAGCAAAAAAGTAAAAAAAAAAAAAAAAAATTGATCTTTGTTTAGATTAACAGACCCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCAT	-			P-0020043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	58	106	0	ENST00000346208.3:c.1048-63_1139del		p.X350_splice	ENST00000346208		350																																																																																
WT1	7490	MSKCC	GRCh37	11	32413566	32413566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	9	483	0	ENST00000332351.3:c.1384C>T	p.Arg462Trp	p.R462W	ENST00000332351	NM_024426.4	462	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928067	178928093	+	inframe_deletion	In_Frame_Del	DEL	CCTCATGGATTAGAAGATTTGCTGAAC	CCTCATGGATTAGAAGATTTGCTGAAC	-			P-0020043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	20	660	0	ENST00000263967.3:c.1348_1374del	p.His450_Pro458del	p.H450_P458del	ENST00000263967	NM_006218.2	449	CCTCATGGATTAGAAGATTTGCTGAAC/-																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	274	504	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	187	815	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112221	115112221	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	170	491	0	ENST00000257566.3:c.1519C>A	p.Leu507Met	p.L507M	ENST00000257566	NM_016569.3	507	Ctg/Atg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519963		P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	137	450	1	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969797	81969797	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759995209		P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	114	605	0	ENST00000359376.3:c.2866C>T	p.Arg956Cys	p.R956C	ENST00000359376	NM_002661.3	956	Cgc/Tgc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90645522	90645522	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	18	130	0	ENST00000330062.3:c.101A>T	p.Gln34Leu	p.Q34L	ENST00000330062	NM_002168.2	34	cAg/cTg																																																																															
CBL	867	MSKCC	GRCh37	11	119170321	119170321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	105	358	0	ENST00000264033.4:c.2551G>A	p.Ala851Thr	p.A851T	ENST00000264033	NM_005188.3	851	Gcc/Acc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923632	72923632	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	39	511	0	ENST00000268489.5:c.3446C>A	p.Pro1149Gln	p.P1149Q	ENST00000268489	NM_006885.3	1149	cCa/cAa																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489457	40489467	+	frameshift_variant	Frame_Shift_Del	DEL	TTTCTAGCCGA	TTTCTAGCCGA	-			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	98	463	1	ENST00000264657.5:c.783_793del	p.Asp261GlufsTer18	p.D261Efs*18	ENST00000264657	NM_139276.2	261	gaTCGGCTAGAAAac/gaac																																																																															
SETD2	29072	MSKCC	GRCh37	3	47144875	47144875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	178	621	1	ENST00000409792.3:c.4878C>A	p.Phe1626Leu	p.F1626L	ENST00000409792	NM_014159.6	1626	ttC/ttA																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526605	31526605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	139	554	1	ENST00000344624.3:c.435G>A	p.Met145Ile	p.M145I	ENST00000344624		145	atG/atA																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967841	93967841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	108	610	3	ENST00000369303.4:c.2086C>A	p.His696Asn	p.H696N	ENST00000369303	NM_004440.3	696	Cat/Aat																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450282	50450282	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	137	619	0	ENST00000331340.3:c.466C>A	p.Gln156Lys	p.Q156K	ENST00000331340	NM_006060.4	156	Cag/Aag																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194611	29194611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	54	839	0	ENST00000240100.2:c.1117G>A	p.Gly373Ser	p.G373S	ENST00000240100	NM_001394.6	373	Ggc/Agc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038562	47038562	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	123	391	0	ENST00000329236.7:c.493G>C	p.Glu165Gln	p.E165Q	ENST00000329236	NM_001204466.1	165	Gag/Cag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	73	707	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	27	485	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117321	115117321	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	119	474	0	ENST00000257566.3:c.853C>T	p.Gln285Ter	p.Q285*	ENST00000257566	NM_016569.3	285	Cag/Tag																																																																															
CDH1	999	MSKCC	GRCh37	16	68844171	68844172	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	185	798	1	ENST00000261769.5:c.759_760insA	p.Asp254ArgfsTer4	p.D254Rfs*4	ENST00000261769	NM_004360.3	253	-/A																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884933	151884933	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	24	368	0	ENST00000262189.6:c.4661-1G>A		p.X1554_splice	ENST00000262189	NM_170606.2	1554																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0020054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	125	93	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67196653	67196653	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	158	117	0	ENST00000312629.5:c.182G>T	p.Arg61Leu	p.R61L	ENST00000312629	NM_003952.2	61	cGc/cTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845561	151845561	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	204	169	0	ENST00000262189.6:c.13451A>G	p.His4484Arg	p.H4484R	ENST00000262189	NM_170606.2	4484	cAc/cGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0020057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	66	823	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	197	792	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0020059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	192	643	2	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
CTCF	10664	MSKCC	GRCh37	16	67645875	67645875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	211	745	2	ENST00000264010.4:c.803G>T	p.Cys268Phe	p.C268F	ENST00000264010	NM_006565.3	268	tGt/tTt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52443595	52443595	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	162	661	1	ENST00000460680.1:c.97T>C	p.Tyr33His	p.Y33H	ENST00000460680	NM_004656.3	33	Tac/Cac																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032136	26032136	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	138	535	0	ENST00000244661.2:c.153G>C	p.Glu51Asp	p.E51D	ENST00000244661	NM_003537.3	51	gaG/gaC																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158407	26158407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	265	1189	5	ENST00000289316.2:c.10C>T	p.Pro4Ser	p.P4S	ENST00000289316	NM_138720.2	4	Cct/Tct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	162	1014	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0020066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	111	990	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	173	544	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RAC1	5879	MSKCC	GRCh37	7	6439807	6439807	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	95	588	0	ENST00000356142.4:c.333T>A	p.Asn111Lys	p.N111K	ENST00000356142	NM_018890.3	111	aaT/aaA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	121	747	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0020075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	175	878	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0020075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	138	833	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519896		P-0020075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	111	512	0	ENST00000281708.4:c.1514G>T	p.Arg505Leu	p.R505L	ENST00000281708	NM_033632.3	505	cGc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112175749	112175753	+	frameshift_variant	Frame_Shift_Del	DEL	TACTT	TACTT	-			P-0020075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	164	420	0	ENST00000257430.4:c.4460_4464del	p.Thr1487IlefsTer25	p.T1487Ifs*25	ENST00000257430	NM_000038.5	1486	gaTACTTta/gata																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212450	5212450	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1196839847		P-0020075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	65	879	0	ENST00000357368.4:c.4667C>T	p.Pro1556Leu	p.P1556L	ENST00000357368	NM_002850.3	1556	cCg/cTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720678	89720678	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	67	311	0	ENST00000371953.3:c.829A>G	p.Thr277Ala	p.T277A	ENST00000371953	NM_000314.4	277	Aca/Gca																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94200987	94200987	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	119	546	0	ENST00000323929.3:c.1090C>T	p.Arg364Ter	p.R364*	ENST00000323929	NM_005591.3	364	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0020076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	63	636	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28636057	28636057	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	78	816	0	ENST00000241453.7:c.315G>C	p.Trp105Cys	p.W105C	ENST00000241453	NM_004119.2	105	tgG/tgC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	81	741	1	ENST00000269305.4:c.808T>A	p.Phe270Ile	p.F270I	ENST00000269305	NM_001126112.2	270	Ttt/Att																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209457	98209457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	231	554	0	ENST00000331920.6:c.4081G>A	p.Val1361Met	p.V1361M	ENST00000331920	NM_000264.3	1361	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	152	623	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390873	139390873	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	244	884	2	ENST00000277541.6:c.7318C>T	p.Gln2440Ter	p.Q2440*	ENST00000277541	NM_017617.3	2440	Cag/Tag																																																																															
AKT3	10000	MSKCC	GRCh37	1	243708856	243708856	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	214	742	0	ENST00000263826.5:c.1207A>G	p.Ser403Gly	p.S403G	ENST00000263826	NM_005465.4	403	Agt/Ggt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733227	40733227	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	64	720	0	ENST00000373198.4:c.3579A>T	p.Gln1193His	p.Q1193H	ENST00000373198	NM_133170.3	1193	caA/caT																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265861	41266231	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAA	GAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAA	-			P-0020081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12	27	13	0	ENST00000349496.5:c.14-154_230del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
TGFBR1	7046	MSKCC	GRCh37	9	101904892	101904893	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0020081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	105	497	0	ENST00000374994.4:c.881_882del	p.Arg294IlefsTer38	p.R294Ifs*38	ENST00000374994	NM_004612.2	294	AGa/a																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	64	560	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575199	48575199	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0020085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	48	299	0	ENST00000342988.3:c.393T>G	p.Tyr131Ter	p.Y131*	ENST00000342988	NM_005359.5	131	taT/taG																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21968236	21968239	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GGAT	GGAT	-			P-0020085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	55	482	0	ENST00000304494.5:c.460_463del	p.Ile154ProfsTer38	p.I154Pfs*38	ENST00000304494	NM_000077.4	154	ATCCcc/cc																																																																															
CDH1	999	MSKCC	GRCh37	16	68857322	68857322	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0020090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	66	488	0	ENST00000261769.5:c.1957A>T	p.Lys653Ter	p.K653*	ENST00000261769	NM_004360.3	653	Aag/Tag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15971420	15971420	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	86	598	0	ENST00000268712.3:c.4529del	p.Asn1510ThrfsTer12	p.N1510Tfs*12	ENST00000268712	NM_006311.3	1510	aAc/ac																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115701	8115704	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GATT	GATT	-			P-0020091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	94	337	0	ENST00000346208.3:c.1048-1_1050delGATT		p.X350_splice	ENST00000346208		350																																																																																
RUNX1	861	MSKCC	GRCh37	21	36171657	36171657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	90	364	0	ENST00000300305.3:c.908C>A	p.Ser303Ter	p.S303*	ENST00000300305		303	tCa/tAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	157	804	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	108	992	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																															
TERT	7015	MSKCC	GRCh37	5	1268645	1268645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	115	1049	1	ENST00000310581.5:c.2572C>T	p.Arg858Trp	p.R858W	ENST00000310581	NM_198253.2	858	Cgg/Tgg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46211656	46211656	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	101	471	0	ENST00000334344.6:c.625del	p.Val209CysfsTer6	p.V209Cfs*6	ENST00000334344	NM_152641.2	208	Ggg/gg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46215255	46215271	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TAGAGACTTCGTTAAGG	TAGAGACTTCGTTAAGG	-			P-0020103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	123	636	0	ENST00000334344.6:c.692_705+3del		p.X231_splice	ENST00000334344	NM_152641.2	231																																																																																
MST1	4485	MSKCC	GRCh37	3	49725207	49725207	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs71193817		P-0020116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	22	222	0	ENST00000449682.2:c.218G>A	p.Arg73His	p.R73H	ENST00000449682	NM_020998.3	73	cGc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0020119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	160	760	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577093	7577093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	34	820	0	ENST00000269305.4:c.845G>C	p.Arg282Pro	p.R282P	ENST00000269305	NM_001126112.2	282	cGg/cCg																																																																															
RB1	5925	MSKCC	GRCh37	13	48916831	48916831	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	17	669	1	ENST00000267163.4:c.361C>T	p.Gln121Ter	p.Q121*	ENST00000267163	NM_000321.2	121	Cag/Tag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437121	110437121	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	28	133	0	ENST00000375856.3:c.1280A>G	p.His427Arg	p.H427R	ENST00000375856	NM_003749.2	427	cAc/cGc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0020129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	16	654	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060863	38060863	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	156	885	0	ENST00000250448.2:c.1126del	p.Ala376HisfsTer13	p.A376Hfs*13	ENST00000250448	NM_004496.3	376	Gca/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7579530	7579530	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	179	1167	0	ENST00000269305.4:c.157del	p.Trp53GlyfsTer70	p.W53Gfs*70	ENST00000269305	NM_001126112.2	53	Tgg/gg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95557630	95557630	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	352	981	0	ENST00000343455.3:c.5437G>C	p.Glu1813Gln	p.E1813Q	ENST00000343455	NM_177438.2	1813	Gag/Cag																																																																															
B2M	567	MSKCC	GRCh37	15	45003799	45003799	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	330	783	0	ENST00000558401.1:c.55G>T	p.Glu19Ter	p.E19*	ENST00000558401	NM_004048.2	19	Gag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165678	47165678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	301	888	1	ENST00000409792.3:c.448C>T	p.His150Tyr	p.H150Y	ENST00000409792	NM_014159.6	150	Cat/Tat																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039625	47039626	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTGCAGATC			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	175	865	0	ENST00000329236.7:c.850_858dup	p.Ile284_Gln286dup	p.I284_Q286dup	ENST00000329236	NM_001204466.1	284	-/CTGCAGATC																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528553	89528553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	195	520	0	ENST00000336596.2:c.2853G>A	p.Met951Ile	p.M951I	ENST00000336596	NM_005233.5	951	atG/atA																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78897336	78897336	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	285	1003	0	ENST00000306801.3:c.2671G>T	p.Asp891Tyr	p.D891Y	ENST00000306801	NM_020761.2	891	Gat/Tat																																																																															
MGA	23269	MSKCC	GRCh37	15	42028539	42028539	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	413	1001	0	ENST00000219905.7:c.4077C>G	p.Ile1359Met	p.I1359M	ENST00000219905	NM_001164273.1	1359	atC/atG																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288502	15288502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	141	316	0	ENST00000263388.2:c.4237G>A	p.Asp1413Asn	p.D1413N	ENST00000263388	NM_000435.2	1413	Gac/Aac																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645687	12645687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	206	548	0	ENST00000251849.4:c.782C>T	p.Pro261Leu	p.P261L	ENST00000251849	NM_002880.3	261	cCt/cTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600470	10600470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	323	946	2	ENST00000171111.5:c.1385G>T	p.Gly462Val	p.G462V	ENST00000171111	NM_203500.1	462	gGg/gTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562606	95562606	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	218	652	0	ENST00000343455.3:c.4651G>C	p.Glu1551Gln	p.E1551Q	ENST00000343455	NM_177438.2	1551	Gag/Cag																																																																															
MGA	23269	MSKCC	GRCh37	15	42028481	42028481	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	292	797	0	ENST00000219905.7:c.4019C>G	p.Ser1340Ter	p.S1340*	ENST00000219905	NM_001164273.1	1340	tCa/tGa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911971	32911971	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	293	898	0	ENST00000380152.3:c.3479G>C	p.Arg1160Thr	p.R1160T	ENST00000380152		1160	aGa/aCa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256441	16256441	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	321	976	0	ENST00000375759.3:c.3706G>C	p.Asp1236His	p.D1236H	ENST00000375759	NM_015001.2	1236	Gat/Cat																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256988	16256988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	392	1017	1	ENST00000375759.3:c.4253G>A	p.Arg1418Gln	p.R1418Q	ENST00000375759	NM_015001.2	1418	cGa/cAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023006	27023006	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	29	88	0	ENST00000324856.7:c.112G>C	p.Glu38Gln	p.E38Q	ENST00000324856	NM_006015.4	38	Gag/Cag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023610	27023610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	274	618	0	ENST00000324856.7:c.716C>T	p.Pro239Leu	p.P239L	ENST00000324856	NM_006015.4	239	cCg/cTg																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439599	51439599	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	209	740	0	ENST00000262662.1:c.164G>C	p.Arg55Thr	p.R55T	ENST00000262662		55	aGa/aCa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120457999	120457999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	313	873	0	ENST00000256646.2:c.7346G>A	p.Gly2449Glu	p.G2449E	ENST00000256646	NM_024408.3	2449	gGa/gAa																																																																															
TET1	80312	MSKCC	GRCh37	10	70450591	70450591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	363	919	0	ENST00000373644.4:c.5431G>A	p.Glu1811Lys	p.E1811K	ENST00000373644	NM_030625.2	1811	Gaa/Aaa																																																																															
ATM	472	MSKCC	GRCh37	11	108160368	108160368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	225	686	0	ENST00000278616.4:c.4276G>A	p.Ala1426Thr	p.A1426T	ENST00000278616	NM_000051.3	1426	Gca/Aca																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307593	118307593	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	291	866	0	ENST00000534358.1:c.366C>G	p.Ile122Met	p.I122M	ENST00000534358	NM_005933.3	122	atC/atG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426469	49426469	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	416	1158	0	ENST00000301067.7:c.12019C>T	p.Gln4007Ter	p.Q4007*	ENST00000301067	NM_003482.3	4007	Caa/Taa																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112924315	112924315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	350	1020	0	ENST00000351677.2:c.1261C>T	p.Arg421Trp	p.R421W	ENST00000351677	NM_002834.3	421	Cgg/Tgg																																																																															
RAB35	11021	MSKCC	GRCh37	12	120535159	120535159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	243	826	0	ENST00000229340.5:c.496G>A	p.Glu166Lys	p.E166K	ENST00000229340	NM_006861.6	166	Gag/Aag																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608067	28608067	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	343	1080	0	ENST00000241453.7:c.1899C>G	p.Ser633Arg	p.S633R	ENST00000241453	NM_004119.2	633	agC/agG																																																																															
FLT1	2321	MSKCC	GRCh37	13	28931812	28931812	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	246	706	2	ENST00000282397.4:c.2127A>T	p.Leu709Phe	p.L709F	ENST00000282397	NM_002019.4	709	ttA/ttT																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911387	32911387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	244	891	0	ENST00000380152.3:c.2895G>A	p.Met965Ile	p.M965I	ENST00000380152		965	atG/atA																																																																															
RB1	5925	MSKCC	GRCh37	13	49039134	49039134	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	174	460	0	ENST00000267163.4:c.2212A>G	p.Thr738Ala	p.T738A	ENST00000267163	NM_000321.2	738	Aca/Gca																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436695	110436695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	369	1033	2	ENST00000375856.3:c.1706G>A	p.Arg569Gln	p.R569Q	ENST00000375856	NM_003749.2	569	cGa/cAa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609582	81609582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	286	815	0	ENST00000298171.2:c.1180G>A	p.Glu394Lys	p.E394K	ENST00000298171	NM_000369.2	394	Gaa/Aaa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610140	81610140	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	261	661	0	ENST00000298171.2:c.1738C>G	p.Leu580Val	p.L580V	ENST00000298171	NM_000369.2	580	Ctg/Gtg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95563014	95563014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	206	692	0	ENST00000343455.3:c.4243G>A	p.Glu1415Lys	p.E1415K	ENST00000343455	NM_177438.2	1415	Gag/Aag																																																																															
DICER1	23405	MSKCC	GRCh37	14	95572056	95572056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	394	1108	0	ENST00000343455.3:c.3052G>A	p.Glu1018Lys	p.E1018K	ENST00000343455	NM_177438.2	1018	Gag/Aag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350663	89350663	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	458	1511	0	ENST00000301030.4:c.2287G>C	p.Glu763Gln	p.E763Q	ENST00000301030	NM_001256183.1	763	Gag/Cag																																																																															
NF1	4763	MSKCC	GRCh37	17	29684037	29684037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	288	1073	3	ENST00000358273.4:c.7798G>A	p.Glu2600Lys	p.E2600K	ENST00000358273	NM_001042492.2	2600	Gaa/Aaa																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428030	33428030	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	350	1023	0	ENST00000335858.7:c.593A>T	p.Asp198Val	p.D198V	ENST00000335858	NM_133629.2	198	gAc/gTc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618746	37618746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	295	836	0	ENST00000447079.4:c.422G>A	p.Gly141Glu	p.G141E	ENST00000447079	NM_015083.1	141	gGa/gAa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45372095	45372095	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	362	1105	0	ENST00000262160.6:c.1074G>C	p.Gln358His	p.Q358H	ENST00000262160	NM_005901.5	358	caG/caC																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45377654	45377654	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	200	669	0	ENST00000262160.6:c.775C>G	p.His259Asp	p.H259D	ENST00000262160	NM_005901.5	259	Cat/Gat																																																																															
MALT1	10892	MSKCC	GRCh37	18	56390357	56390357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	204	832	0	ENST00000348428.3:c.1096G>A	p.Val366Met	p.V366M	ENST00000348428	NM_006785.3	366	Gtg/Atg																																																																															
STK11	6794	MSKCC	GRCh37	19	1218492	1218492	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	348	868	1	ENST00000326873.7:c.367del	p.Gln123ArgfsTer6	p.Q123Rfs*6	ENST00000326873	NM_000455.4	123	Cag/ag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2180744	2180749	+	inframe_deletion	In_Frame_Del	DEL	CGAGAC	CGAGAC	-			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	350	1078	0	ENST00000398665.3:c.115_120del	p.Glu39_Thr40del	p.E39_T40del	ENST00000398665	NM_032482.2	38	atCGAGACc/atc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11107030	11107030	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	207	673	1	ENST00000344626.4:c.1735G>T	p.Glu579Ter	p.E579*	ENST00000344626	NM_003072.3	579	Gag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170438	11170438	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	314	976	0	ENST00000344626.4:c.4645G>C	p.Asp1549His	p.D1549H	ENST00000344626	NM_003072.3	1549	Gac/Cac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170531	11170531	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	310	993	0	ENST00000344626.4:c.4738G>C	p.Glu1580Gln	p.E1580Q	ENST00000344626	NM_003072.3	1580	Gag/Cag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288582	15288582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	23	32	0	ENST00000263388.2:c.4157G>A	p.Arg1386Gln	p.R1386Q	ENST00000263388	NM_000435.2	1386	cGg/cAg																																																																															
CIC	23152	MSKCC	GRCh37	19	42791217	42791217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	368	1048	0	ENST00000575354.2:c.277G>A	p.Asp93Asn	p.D93N	ENST00000575354	NM_015125.3	93	Gac/Aac																																																																															
CIC	23152	MSKCC	GRCh37	19	42793231	42793231	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	342	952	0	ENST00000575354.2:c.1123G>T	p.Glu375Ter	p.E375*	ENST00000575354	NM_015125.3	375	Gaa/Taa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096291	178096291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	323	864	1	ENST00000397062.3:c.1040C>T	p.Ser347Leu	p.S347L	ENST00000397062	NM_006164.4	347	tCa/tTa																																																																															
PMS1	5378	MSKCC	GRCh37	2	190708774	190708774	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	327	1040	0	ENST00000441310.2:c.667G>C	p.Glu223Gln	p.E223Q	ENST00000441310	NM_000534.4	223	Gaa/Caa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266792	198266792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	366	891	0	ENST00000335508.6:c.2140G>A	p.Glu714Lys	p.E714K	ENST00000335508	NM_012433.2	714	Gaa/Aaa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37056016	37056016	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	262	845	0	ENST00000231790.2:c.771C>G	p.Ile257Met	p.I257M	ENST00000231790	NM_000249.3	257	atC/atG																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162312	47162312	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs115542291		P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	244	695	0	ENST00000409792.3:c.3814C>T	p.Gln1272Ter	p.Q1272*	ENST00000409792	NM_014159.6	1272	Cag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165587	47165587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	272	919	1	ENST00000409792.3:c.539C>T	p.Ser180Leu	p.S180L	ENST00000409792	NM_014159.6	180	tCa/tTa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620479	52620479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	420	963	3	ENST00000394830.3:c.3274G>A	p.Glu1092Lys	p.E1092K	ENST00000394830	NM_018313.4	1092	Gag/Aag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52668829	52668829	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	203	601	1	ENST00000394830.3:c.1090G>A	p.Ala364Thr	p.A364T	ENST00000394830	NM_018313.4	364	Gca/Aca																																																																															
ATR	545	MSKCC	GRCh37	3	142217479	142217479	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	319	937	0	ENST00000350721.4:c.5518G>C	p.Glu1840Gln	p.E1840Q	ENST00000350721	NM_001184.3	1840	Gaa/Caa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081560	143081560	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	305	968	0	ENST00000262992.4:c.1514G>C	p.Arg505Thr	p.R505T	ENST00000262992	NM_001101669.1	505	aGa/aCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584674	187584674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	341	1083	1	ENST00000441802.2:c.3359C>T	p.Ser1120Leu	p.S1120L	ENST00000441802	NM_005245.3	1120	tCa/tTa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730104	41730104	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	239	728	0	ENST00000242208.4:c.425A>T	p.Lys142Met	p.K142M	ENST00000242208	NM_002192.2	142	aAg/aTg																																																																															
SMO	6608	MSKCC	GRCh37	7	128851972	128851972	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	325	1052	1	ENST00000249373.3:c.2044G>T	p.Val682Leu	p.V682L	ENST00000249373	NM_005631.4	682	Gtg/Ttg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151892994	151892994	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	206	647	0	ENST00000262189.6:c.4376C>G	p.Ser1459Ter	p.S1459*	ENST00000262189	NM_170606.2	1459	tCa/tGa																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29207636	29207636	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	245	842	0	ENST00000240100.2:c.160C>G	p.Leu54Val	p.L54V	ENST00000240100	NM_001394.6	54	Ctg/Gtg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741860	145741860	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	363	1078	0	ENST00000428558.2:c.643G>C	p.Glu215Gln	p.E215Q	ENST00000428558	NM_004260.3	215	Gag/Cag																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139815559	139815559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	413	1145	0	ENST00000247668.2:c.1030G>C	p.Glu344Gln	p.E344Q	ENST00000247668	NM_021138.3	344	Gag/Cag																																																																															
STAG2	10735	MSKCC	GRCh37	X	123184073	123184073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	271	919	0	ENST00000218089.9:c.931G>A	p.Glu311Lys	p.E311K	ENST00000218089	NM_001042749.1	311	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0020135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	72	655	2	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0020135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	136	843	2	ENST00000269305.4:c.673-2A>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	86	875	2	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	64	778	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	83	751	2	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	29	453	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109924	115109924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	36	890	2	ENST00000257566.3:c.1954G>A	p.Gly652Ser	p.G652S	ENST00000257566	NM_016569.3	652	Ggc/Agc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	59	891	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	56	844	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	71	837	2	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497245	149497245	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	94	1044	3	ENST00000261799.4:c.3073delC	p.Leu1025CysfsTer20	p.L1025Cfs*20	ENST00000261799	NM_002609.3	1025	Ctg/tg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247367	153247367	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	41	574	1	ENST00000281708.4:c.1435C>T	p.Arg479Ter	p.R479*	ENST00000281708	NM_033632.3	479	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	33	872	0	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																															
SMO	6608	MSKCC	GRCh37	7	128843374	128843374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772755154		P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	110	937	4	ENST00000249373.3:c.481C>T	p.Arg161Trp	p.R161W	ENST00000249373	NM_005631.4	161	Cgg/Tgg																																																																															
CD79B	974	MSKCC	GRCh37	17	62007731	62007731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	25	510	0	ENST00000392795.3:c.136C>T	p.Arg46Trp	p.R46W	ENST00000392795	NM_001039933.1	46	Cgg/Tgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821890	72821890	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	78	705	0	ENST00000268489.5:c.10285del	p.Arg3429ValfsTer56	p.R3429Vfs*56	ENST00000268489	NM_006885.3	3429	Cgt/gt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001374	150001374	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	56	1107	2	ENST00000253339.5:c.2230C>T	p.Arg744Ter	p.R744*	ENST00000253339		744	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5243960	5243960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	57	771	1	ENST00000357368.4:c.1522G>A	p.Gly508Ser	p.G508S	ENST00000357368	NM_002850.3	508	Ggc/Agc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	30	855	8	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	77	518	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713345	30713345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	34	732	0	ENST00000359013.4:c.745C>T	p.Arg249Cys	p.R249C	ENST00000359013	NM_001024847.2	249	Cgc/Tgc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485403	57485403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	46	627	0	ENST00000371085.3:c.985G>A	p.Gly329Arg	p.G329R	ENST00000371085	NM_000516.4	329	Gga/Aga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288969	212288969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148791072		P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	58	1012	2	ENST00000342788.4:c.2777C>T	p.Thr926Met	p.T926M	ENST00000342788	NM_005235.2	926	aCg/aTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119909	70119910	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	77	765	2	ENST00000245479.2:c.916dup	p.Val306GlyfsTer272	p.V306Gfs*272	ENST00000245479	NM_000346.3	304	ccg/ccGg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612344	1612344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	104	1071	2	ENST00000344749.5:c.1675G>A	p.Val559Met	p.V559M	ENST00000344749	NM_001136139.2	559	Gtg/Atg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780289	9780289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201282174		P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	45	685	5	ENST00000377346.4:c.1459G>A	p.Ala487Thr	p.A487T	ENST00000377346	NM_005026.3	487	Gcc/Acc																																																																															
TERT	7015	MSKCC	GRCh37	5	1279530	1279530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	101	1134	1	ENST00000310581.5:c.2006G>A	p.Arg669Gln	p.R669Q	ENST00000310581	NM_198253.2	669	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	105	1075	2	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224124	36224124	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	43	903	0	ENST00000222270.7:c.6678delC	p.Thr2227ArgfsTer34	p.T2227Rfs*34	ENST00000222270	NM_014727.1	2225	tCc/tc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862845	9862845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	91	968	1	ENST00000330684.3:c.2458G>A	p.Val820Ile	p.V820I	ENST00000330684	NM_001134407.1	820	Gta/Ata																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097688	27097688	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	98	1022	0	ENST00000324856.7:c.3281del	p.Lys1094SerfsTer67	p.K1094Sfs*67	ENST00000324856	NM_006015.4	1093	Aaa/aa																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45798454	45798454	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	122	1004	0	ENST00000372115.3:c.515T>A	p.Leu172Gln	p.L172Q	ENST00000372115	NM_001048171.1	172	cTg/cAg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123298104	123298104	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	50	806	0	ENST00000358487.5:c.748+2T>G		p.X250_splice	ENST00000358487	NM_000141.4	250																																																																																
RPS6KB2	6199	MSKCC	GRCh37	11	67198960	67198960	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	56	780	0	ENST00000312629.5:c.431T>C	p.Leu144Pro	p.L144P	ENST00000312629	NM_003952.2	144	cTc/cCc																																																																															
PGR	5241	MSKCC	GRCh37	11	100999337	100999337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	96	1094	1	ENST00000325455.5:c.465del	p.Ala156ProfsTer10	p.A156Pfs*10	ENST00000325455	NM_001202474.3	155	ccC/cc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	394723	394723	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	54	977	0	ENST00000399788.2:c.4972T>G	p.Cys1658Gly	p.C1658G	ENST00000399788	NM_001042603.1	1658	Tgt/Ggt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432497	49432497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	74	783	0	ENST00000301067.7:c.8642G>A	p.Arg2881Gln	p.R2881Q	ENST00000301067	NM_003482.3	2881	cGg/cAg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112404	115112404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	76	750	0	ENST00000257566.3:c.1336A>G	p.Thr446Ala	p.T446A	ENST00000257566	NM_016569.3	446	Act/Gct																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563152	21563152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	85	963	1	ENST00000382592.4:c.767C>T	p.Pro256Leu	p.P256L	ENST00000382592	NM_014572.2	256	cCg/cTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560418	95560418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	98	861	2	ENST00000343455.3:c.5171C>T	p.Pro1724Leu	p.P1724L	ENST00000343455	NM_177438.2	1724	cCg/cTg																																																																															
BLM	641	MSKCC	GRCh37	15	91293027	91293027	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	35	963	0	ENST00000355112.3:c.531del	p.Phe177LeufsTer2	p.F177Lfs*2	ENST00000355112	NM_000057.2	177	Ttt/tt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67662322	67662322	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs112271126		P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	80	802	0	ENST00000264010.4:c.1568A>G	p.Tyr523Cys	p.Y523C	ENST00000264010	NM_006565.3	523	tAc/tGc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37872075	37872075	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	51	1033	0	ENST00000269571.5:c.1396G>C	p.Ala466Pro	p.A466P	ENST00000269571		466	Gcc/Ccc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245584	41245584	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	59	1109	0	ENST00000357654.3:c.1964A>G	p.Tyr655Cys	p.Y655C	ENST00000357654	NM_007294.3	655	tAc/tGc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761361	59761361	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	92	861	2	ENST00000259008.2:c.3046del	p.Ile1016TyrfsTer43	p.I1016Yfs*43	ENST00000259008	NM_032043.2	1016	Ata/ta																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097039	11097039	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	93	1044	0	ENST00000344626.4:c.530T>C	p.Leu177Pro	p.L177P	ENST00000344626	NM_003072.3	177	cTg/cCg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272054	15272054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	104	854	0	ENST00000263388.2:c.6385G>A	p.Ala2129Thr	p.A2129T	ENST00000263388	NM_000435.2	2129	Gct/Act																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278019	18278019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	46	847	1	ENST00000222254.8:c.1639C>T	p.Arg547Trp	p.R547W	ENST00000222254	NM_005027.3	547	Cgg/Tgg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25471099	25471099	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	102	1008	0	ENST00000264709.3:c.662T>G	p.Ile221Ser	p.I221S	ENST00000264709	NM_175629.2	221	aTt/aGt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248446	212248446	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	26	615	0	ENST00000342788.4:c.3821T>C	p.Ile1274Thr	p.I1274T	ENST00000342788	NM_005235.2	1274	aTc/aCc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660553	227660553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	48	756	1	ENST00000305123.5:c.2902G>A	p.Ala968Thr	p.A968T	ENST00000305123	NM_005544.2	968	Gca/Aca																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023284	31023284	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	35	926	0	ENST00000375687.4:c.2769G>T	p.Glu923Asp	p.E923D	ENST00000375687	NM_015338.5	923	gaG/gaT																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375142	31375142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	91	1030	2	ENST00000328111.2:c.539C>T	p.Thr180Met	p.T180M	ENST00000328111	NM_006892.3	180	aCg/aTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41551047	41551047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	86	953	3	ENST00000263253.7:c.3191C>T	p.Ala1064Val	p.A1064V	ENST00000263253	NM_001429.3	1064	gCa/gTa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37035155	37035155	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	48	534	0	ENST00000231790.2:c.116+1G>T		p.X39_splice	ENST00000231790	NM_000249.3	39																																																																																
MLH1	4292	MSKCC	GRCh37	3	37067140	37067140	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	36	521	1	ENST00000231790.2:c.1051G>T	p.Gly351Ter	p.G351*	ENST00000231790	NM_000249.3	351	Gga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911480	134911480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	69	942	0	ENST00000398015.3:c.1945G>A	p.Ala649Thr	p.A649T	ENST00000398015	NM_004441.4	649	Gcc/Acc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750489	41750490	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	40	777	2	ENST00000226382.2:c.138_139delinsTT	p.Ile47Leu	p.I47L	ENST00000226382	NM_003924.3	46	ccGAta/ccTTta																																																																															
TET2	54790	MSKCC	GRCh37	4	106197299	106197299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	54	586	0	ENST00000380013.4:c.5632C>A	p.Arg1878Ser	p.R1878S	ENST00000380013	NM_001127208.2	1878	Cgt/Agt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540992	187540992	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	60	678	0	ENST00000441802.2:c.6748T>C	p.Tyr2250His	p.Y2250H	ENST00000441802	NM_005245.3	2250	Tat/Cat																																																																															
NSD1	64324	MSKCC	GRCh37	5	176639097	176639097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	66	920	0	ENST00000439151.2:c.3697C>T	p.Arg1233Trp	p.R1233W	ENST00000439151	NM_022455.4	1233	Cgg/Tgg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056458	26056458	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	23	486	0	ENST00000343677.2:c.199G>C	p.Ala67Pro	p.A67P	ENST00000343677	NM_005319.3	67	Gct/Cct																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845973	151845973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	96	858	3	ENST00000262189.6:c.13039C>T	p.Pro4347Ser	p.P4347S	ENST00000262189	NM_170606.2	4347	Ccg/Tcg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151849897	151849897	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	45	655	0	ENST00000262189.6:c.12419A>C	p.Gln4140Pro	p.Q4140P	ENST00000262189	NM_170606.2	4140	cAg/cCg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500893	8500893	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	56	969	0	ENST00000356435.5:c.1989G>C	p.Leu663Phe	p.L663F	ENST00000356435		663	ttG/ttC																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209367	98209367	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45535032		P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	76	767	2	ENST00000331920.6:c.4171C>T	p.Arg1391Trp	p.R1391W	ENST00000331920	NM_000264.3	1391	Cgg/Tgg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44937723	44937723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	62	450	0	ENST00000377967.4:c.2911C>T	p.Arg971Cys	p.R971C	ENST00000377967	NM_021140.2	971	Cgt/Tgt																																																																															
ARAF	369	MSKCC	GRCh37	X	47422464	47422464	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	41	468	0	ENST00000377045.4:c.96+2T>C		p.X32_splice	ENST00000377045	NM_001654.4	32																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53253924	53253924	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	66	352	1	ENST00000375401.3:c.148G>A	p.Ala50Thr	p.A50T	ENST00000375401	NM_004187.3	50	Gcg/Acg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39750723	39750723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	31	622	0	ENST00000361337.2:c.2123G>A	p.Arg708Gln	p.R708Q	ENST00000361337	NM_003286.2	708	cGa/cAa																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402834	20402836	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-			P-0020152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	10	51	1	ENST00000346618.3:c.385_387del	p.Gly129del	p.G129del	ENST00000346618	NM_001949.4	124	aGCGgc/agc																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0020153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	10	497	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579419	7579420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	16	1040	0	ENST00000269305.4:c.267dup	p.Ser90LeufsTer59	p.S90Lfs*59	ENST00000269305	NM_001126112.2	89	-/C																																																																															
WT1	7490	MSKCC	GRCh37	11	32421519	32421519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	23	895	2	ENST00000332351.3:c.1073C>T	p.Thr358Met	p.T358M	ENST00000332351	NM_024426.4	358	aCg/aTg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45860613	45860614	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAG			P-0020157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	142	921	0	ENST00000391945.4:c.1390_1393dup	p.Asp465AlafsTer37	p.D465Afs*37	ENST00000391945	NM_000400.3	465	gac/gCTGGac																																																																															
ROS1	6098	MSKCC	GRCh37	6	117663651	117663651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	59	596	0	ENST00000368508.3:c.4581G>A	p.Met1527Ile	p.M1527I	ENST00000368508	NM_002944.2	1527	atG/atA																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8524992	8524992	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	75	466	0	ENST00000356435.5:c.612A>C	p.Lys204Asn	p.K204N	ENST00000356435		204	aaA/aaC																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880997	37880998	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TGT			P-0020158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	112	808	0	ENST00000269571.5:c.2326_2327insTGT	p.Gly776delinsValCys	p.G776delinsVC	ENST00000269571		776	ggt/gTGTgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0020158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	155	817	3	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10249155	10249155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	68	789	0	ENST00000340748.4:c.4027G>A	p.Val1343Met	p.V1343M	ENST00000340748		1343	Gtg/Atg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980846	40980846	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	129	691	0	ENST00000373198.4:c.1640A>G	p.Asn547Ser	p.N547S	ENST00000373198	NM_133170.3	547	aAt/aGt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1955162	1955162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	114	752	1	ENST00000382891.5:c.2249C>T	p.Thr750Ile	p.T750I	ENST00000382891	NM_133335.3	750	aCt/aTt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190317	32190317	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	71	519	0	ENST00000375023.3:c.422del	p.Pro141HisfsTer111	p.P141Hfs*111	ENST00000375023	NM_004557.3	141	cCa/ca																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066693	94066693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	97	655	0	ENST00000369303.4:c.1066G>T	p.Asp356Tyr	p.D356Y	ENST00000369303	NM_004440.3	356	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574022	+	frameshift_variant	Frame_Shift_Del	DEL	CGAAGCGCTCA	CGAAGCGCTCA	-			P-0020168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	104	795	0	ENST00000269305.4:c.1005_1015del	p.Glu336AspfsTer7	p.E336Dfs*7	ENST00000269305	NM_001126112.2	335	cgTGAGCGCTTCGag/cgag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0020170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	531	831	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602799	10602799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	523	1061	0	ENST00000171111.5:c.779G>T	p.Arg260Leu	p.R260L	ENST00000171111	NM_203500.1	260	cGa/cTa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123171462	123171462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	328	401	0	ENST00000218089.9:c.374C>T	p.Ser125Leu	p.S125L	ENST00000218089	NM_001042749.1	125	tCa/tTa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026697	6026697	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1380	338	1063	3	ENST00000265849.7:c.1699C>T	p.Gln567Ter	p.Q567*	ENST00000265849	NM_000535.5	567	Cag/Tag																																																																															
NF2	4771	MSKCC	GRCh37	22	30035154	30035154	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	520	854	1	ENST00000338641.4:c.316G>T	p.Glu106Ter	p.E106*	ENST00000338641	NM_000268.3	106	Gaa/Taa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2126100	2126100	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	126	963	0	ENST00000219476.3:c.2671C>G	p.His891Asp	p.H891D	ENST00000219476	NM_000548.3	891	Cac/Gac																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959190	2959190	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1174	106	1000	0	ENST00000396946.4:c.2326T>G	p.Phe776Val	p.F776V	ENST00000396946	NM_032415.4	776	Ttc/Gtc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891308	101891308	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	387	1037	1	ENST00000374994.4:c.269C>A	p.Ser90Ter	p.S90*	ENST00000374994	NM_004612.2	90	tCa/tAa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044487	47044506	+	frameshift_variant	Frame_Shift_Del	DEL	CTCAACAAACAAAAAGAAAA	CTCAACAAACAAAAAGAAAA	-			P-0020170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	227	478	0	ENST00000329236.7:c.1752_1771del	p.Asn585GlnfsTer3	p.N585Qfs*3	ENST00000329236	NM_001204466.1	584	CTCAACAAACAAAAAGAAAAc/c																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244997	46244997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	387	647	0	ENST00000334344.6:c.3091C>T	p.Gln1031Ter	p.Q1031*	ENST00000334344	NM_152641.2	1031	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089778	27089778	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0020171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	127	543	1	ENST00000324856.7:c.2732+2T>A		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																																
CSDE1	7812	MSKCC	GRCh37	1	115282450	115282450	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	120	649	0	ENST00000438362.2:c.200C>A	p.Ser67Ter	p.S67*	ENST00000438362	NM_001242891.1	67	tCa/tAa																																																																															
RET	5979	MSKCC	GRCh37	10	43601870	43601870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1184	120	666	0	ENST00000355710.3:c.914C>T	p.Pro305Leu	p.P305L	ENST00000355710	NM_020975.4	305	cCt/cTt																																																																															
CBL	867	MSKCC	GRCh37	11	119156109	119156109	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	110	686	0	ENST00000264033.4:c.1777del	p.Arg593GlyfsTer22	p.R593Gfs*22	ENST00000264033	NM_005188.3	592	Ccc/cc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477192	67477192	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	96	465	0	ENST00000327367.4:c.999G>C	p.Lys333Asn	p.K333N	ENST00000327367	NM_005902.3	333	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577599	7577608	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CAGAGCCAAC	CAGAGCCAAC	-			P-0020171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	230	651	0	ENST00000269305.4:c.673_682del	p.Val225ThrfsTer19	p.V225Tfs*19	ENST00000269305	NM_001126112.2	225	GTTGGCTCTGac/ac																																																																															
NF1	4763	MSKCC	GRCh37	17	29556484	29556484	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0020171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	229	349	0	ENST00000358273.4:c.2850+1G>T		p.X950_splice	ENST00000358273	NM_001042492.2	950																																																																																
NCOA3	8202	MSKCC	GRCh37	20	46268381	46268381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	232	588	0	ENST00000371998.3:c.2768C>T	p.Pro923Leu	p.P923L	ENST00000371998		923	cCa/cTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187527226	187527226	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0020171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	101	526	0	ENST00000441802.2:c.10348C>G	p.Gln3450Glu	p.Q3450E	ENST00000441802	NM_005245.3	3450	Cag/Gag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499772	8499772	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	104	611	0	ENST00000356435.5:c.2197C>G	p.Arg733Gly	p.R733G	ENST00000356435		733	Cgc/Ggc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	215	881	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	104	834	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346338	73346338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	80	704	0	ENST00000377767.4:c.1462G>A	p.Asp488Asn	p.D488N	ENST00000377767	NM_014953.3	488	Gat/Aat																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770588	40770588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	133	722	1	ENST00000373198.4:c.2794C>T	p.Arg932Cys	p.R932C	ENST00000373198	NM_133170.3	932	Cgc/Tgc																																																																															
MYCL	4610	MSKCC	GRCh37	1	40366871	40366871	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs753802769		P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	120	913	0	ENST00000397332.2:c.326C>G	p.Ser109Trp	p.S109W	ENST00000397332	NM_001033082.2	109	tCg/tGg																																																																															
IL10	3586	MSKCC	GRCh37	1	206944257	206944257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	170	539	0	ENST00000423557.1:c.373C>T	p.Arg125Cys	p.R125C	ENST00000423557	NM_000572.2	125	Cgc/Tgc																																																																															
FH	2271	MSKCC	GRCh37	1	241669468	241669468	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	34	447	0	ENST00000366560.3:c.739G>A	p.Glu247Lys	p.E247K	ENST00000366560	NM_000143.3	247	Gaa/Aaa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445224	49445224	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	105	998	0	ENST00000301067.7:c.2242G>C	p.Glu748Gln	p.E748Q	ENST00000301067	NM_003482.3	748	Gag/Cag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911151	32911151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	41	851	1	ENST00000380152.3:c.2659G>A	p.Glu887Lys	p.E887K	ENST00000380152		887	Gag/Aag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934806	9934806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	139	841	0	ENST00000330684.3:c.1484G>A	p.Gly495Glu	p.G495E	ENST00000330684	NM_001134407.1	495	gGa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577527	7577534	+	frameshift_variant	Frame_Shift_Del	DEL	GGATGGGC	GGATGGGC	-			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	190	871	0	ENST00000269305.4:c.747_754del	p.Arg249SerfsTer12	p.R249Sfs*12	ENST00000269305	NM_001126112.2	249	agGCCCATCCtc/agtc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12044551	12044551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	163	850	0	ENST00000353533.5:c.1174C>A	p.Pro392Thr	p.P392T	ENST00000353533	NM_003010.3	392	Ccc/Acc																																																																															
NF1	4763	MSKCC	GRCh37	17	29556262	29556262	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	192	778	0	ENST00000358273.4:c.2629A>T	p.Met877Leu	p.M877L	ENST00000358273	NM_001042492.2	877	Atg/Ttg																																																																															
NF1	4763	MSKCC	GRCh37	17	29560068	29560068	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	117	571	0	ENST00000358273.4:c.3545T>G	p.Val1182Gly	p.V1182G	ENST00000358273	NM_001042492.2	1182	gTt/gGt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243610	41243610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	146	936	0	ENST00000357654.3:c.3938A>T	p.Gln1313Leu	p.Q1313L	ENST00000357654	NM_007294.3	1313	cAg/cTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663165	227663166	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	169	764	0	ENST00000305123.5:c.289dup	p.Ala97GlyfsTer22	p.A97Gfs*22	ENST00000305123	NM_005544.2	97	gcg/gGcg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873601	35873601	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	44	428	0	ENST00000303115.3:c.557C>A	p.Thr186Lys	p.T186K	ENST00000303115	NM_002185.3	186	aCa/aAa																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045853	26045853	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	310	789	0	ENST00000540144.1:c.215T>A	p.Val72Glu	p.V72E	ENST00000540144	NM_003531.2	72	gTg/gAg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672870	30672870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	209	987	0	ENST00000376406.3:c.4090G>A	p.Glu1364Lys	p.E1364K	ENST00000376406	NM_014641.2	1364	Gaa/Aaa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117687355	117687355	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	140	611	0	ENST00000368508.3:c.2696A>G	p.Asn899Ser	p.N899S	ENST00000368508	NM_002944.2	899	aAt/aGt																																																																															
HGF	3082	MSKCC	GRCh37	7	81350112	81350113	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	115	728	0	ENST00000222390.5:c.1219dup	p.Arg407LysfsTer28	p.R407Kfs*28	ENST00000222390	NM_000601.4	407	aga/aAga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859588	151859588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	147	622	0	ENST00000262189.6:c.11074G>A	p.Ala3692Thr	p.A3692T	ENST00000262189	NM_170606.2	3692	Gca/Aca																																																																															
MED12	9968	MSKCC	GRCh37	X	70342696	70342696	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	87	798	0	ENST00000374080.3:c.1457G>C	p.Gly486Ala	p.G486A	ENST00000374080		486	gGa/gCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	31	900	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0020177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	455	655	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	283	667	0	ENST00000269305.4:c.808T>G	p.Phe270Val	p.F270V	ENST00000269305	NM_001126112.2	270	Ttt/Gtt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970865	79970865	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	54	707	0	ENST00000265081.6:c.1091C>G	p.Ser364Cys	p.S364C	ENST00000265081	NM_002439.4	364	tCt/tGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155725	56155726	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0020178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	105	600	0	ENST00000399503.3:c.819_820delAG	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	273	AGa/a																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180584	56180584	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	145	691	0	ENST00000399503.3:c.3913A>G	p.Asn1305Asp	p.N1305D	ENST00000399503	NM_005921.1	1305	Aac/Gac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	565	987	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971026	21971026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	187	731	0	ENST00000304494.5:c.332G>T	p.Gly111Val	p.G111V	ENST00000304494	NM_000077.4	111	gGc/gTc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068919	30068919	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	55	1038	0	ENST00000331968.5:c.2010C>G	p.Ile670Met	p.I670M	ENST00000331968	NM_002742.2	670	atC/atG																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986630	36986631	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTGC			P-0020184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	31	274	0	ENST00000354822.5:c.1055_1058dup	p.Ser353ArgfsTer87	p.S353Rfs*87	ENST00000354822	NM_001079668.2	353	agc/agGCAGc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349904	89349904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141871215		P-0020184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	292	1193	0	ENST00000301030.4:c.3046G>A	p.Asp1016Asn	p.D1016N	ENST00000301030	NM_001256183.1	1016	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579363	+	inframe_deletion	In_Frame_Del	DEL	AGACGGAAA	AGACGGAAA	-			P-0020184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	201	961	0	ENST00000269305.4:c.324_332del	p.Phe109_Leu111del	p.F109_L111del	ENST00000269305	NM_001126112.2	108	ggTTTCCGTCTg/ggg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554635	63554635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	94	776	0	ENST00000307078.5:c.104C>T	p.Pro35Leu	p.P35L	ENST00000307078	NM_004655.3	35	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	32	1036	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988221	36988221	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0020185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	27	681	0	ENST00000354822.5:c.432C>G	p.Tyr144Ter	p.Y144*	ENST00000354822	NM_001079668.2	144	taC/taG																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120810	115120810	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	23	619	0	ENST00000257566.3:c.196delG	p.Asp66IlefsTer22	p.D66Ifs*22	ENST00000257566	NM_016569.3	66	Gat/at																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	43	1334	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984085	2984085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	27	606	1	ENST00000396946.4:c.445C>T	p.Arg149Cys	p.R149C	ENST00000396946	NM_032415.4	149	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0020188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	9	755	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0020188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	15	545	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0020189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	244	924	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152055	11152055	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	337	825	2	ENST00000344626.4:c.4243C>T	p.Arg1415Ter	p.R1415*	ENST00000344626	NM_003072.3	1415	Cga/Tga																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244853	46244853	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	410	1189	0	ENST00000334344.6:c.2947C>T	p.Gln983Ter	p.Q983*	ENST00000334344	NM_152641.2	983	Caa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604673	48604673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	216	720	0	ENST00000342988.3:c.1495T>C	p.Cys499Arg	p.C499R	ENST00000342988	NM_005359.5	499	Tgc/Cgc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46603791	46603791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	150	1073	0	ENST00000263734.3:c.1148C>T	p.Ser383Phe	p.S383F	ENST00000263734	NM_001430.4	383	tCt/tTt																																																																															
HGF	3082	MSKCC	GRCh37	7	81358955	81358955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	250	963	3	ENST00000222390.5:c.1006G>A	p.Glu336Lys	p.E336K	ENST00000222390	NM_000601.4	336	Gag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945675	151945677	+	frameshift_variant	Frame_Shift_Del	DEL	AAT	AAT	C			P-0020190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	46	1226	0	ENST00000262189.6:c.1842_1844delinsG	p.Leu615GlyfsTer6	p.L615Gfs*6	ENST00000262189	NM_170606.2	614	gaATTg/gaGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0020192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	225	773	1	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0020192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	24	733	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579575	7579575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	25	834	0	ENST00000269305.4:c.112C>T	p.Gln38Ter	p.Q38*	ENST00000269305	NM_001126112.2	38	Caa/Taa																																																																															
HGF	3082	MSKCC	GRCh37	7	81334738	81334738	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	89	867	1	ENST00000222390.5:c.1978G>T	p.Gly660Trp	p.G660W	ENST00000222390	NM_000601.4	660	Ggg/Tgg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719140	190719140	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	19	541	0	ENST00000441310.2:c.1142C>G	p.Ser381Ter	p.S381*	ENST00000441310	NM_000534.4	381	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579581	7579581	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	24	786	0	ENST00000269305.4:c.106C>G	p.Pro36Ala	p.P36A	ENST00000269305	NM_001126112.2	36	Ccg/Gcg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246277	41246277	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	29	921	1	ENST00000357654.3:c.1271del	p.Gly424ValfsTer6	p.G424Vfs*6	ENST00000357654	NM_007294.3	424	gGt/gt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944516	40944516	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	42	744	0	ENST00000373198.4:c.1986C>A	p.His662Gln	p.H662Q	ENST00000373198	NM_133170.3	662	caC/caA																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93953249	93953249	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	21	825	1	ENST00000369303.4:c.2892G>T	p.Met964Ile	p.M964I	ENST00000369303	NM_004440.3	964	atG/atT																																																																															
TEK	7010	MSKCC	GRCh37	9	27157952	27157952	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	77	808	0	ENST00000380036.4:c.176G>C	p.Arg59Thr	p.R59T	ENST00000380036	NM_000459.3	59	aGg/aCg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045858	47045883	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCTCCCTCACACAGGCCCAAACACG	GCCTCCCTCACACAGGCCCAAACACG	A			P-0020192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	36	597	0	ENST00000329236.7:c.2434-15_2444delinsA		p.X812_splice	ENST00000329236	NM_001204466.1	812																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	304	839	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	351	932	0	ENST00000269305.4:c.470T>G	p.Val157Gly	p.V157G	ENST00000269305	NM_001126112.2	157	gTc/gGc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399158	139399158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	154	856	0	ENST00000277541.6:c.4985G>A	p.Arg1662Gln	p.R1662Q	ENST00000277541	NM_017617.3	1662	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0020215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	45	426	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653784	89653785	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0020215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	33	457	0	ENST00000371953.3:c.82_83insCT	p.Ile28ThrfsTer27	p.I28Tfs*27	ENST00000371953	NM_000314.4	28	att/aCTtt																																																																															
ETV6	2120	MSKCC	GRCh37	12	11905489	11905489	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	54	378	0	ENST00000396373.4:c.139T>G	p.Ser47Ala	p.S47A	ENST00000396373	NM_001987.4	47	Tcg/Gcg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0020217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	33	513	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0020218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	750	511	1	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101867538	101867546	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-			P-0020218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	15	43	0	ENST00000374994.4:c.70_78delGCGGCGGCG	p.Ala24_Ala26del	p.A24_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCGGCg/ctg																																																																															
IRF4	3662	MSKCC	GRCh37	6	394946	394946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	263	537	0	ENST00000380956.4:c.342C>A	p.Ser114Arg	p.S114R	ENST00000380956	NM_001195286.1	114	agC/agA																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59853790	59853790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	279	609	2	ENST00000259008.2:c.2069G>A	p.Gly690Glu	p.G690E	ENST00000259008	NM_032043.2	690	gGa/gAa																																																																															
AURKA	6790	MSKCC	GRCh37	20	54956557	54956557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	50	679	1	ENST00000312783.6:c.637G>T	p.Ala213Ser	p.A213S	ENST00000312783	NM_198436.1	213	Gca/Tca																																																																															
BRAF	673	MSKCC	GRCh37	7	140439713	140439713	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	278	508	0	ENST00000288602.6:c.2026C>G	p.Pro676Ala	p.P676A	ENST00000288602	NM_004333.4	676	Cca/Gca																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061141	38061141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	76	254	0	ENST00000250448.2:c.848G>A	p.Gly283Glu	p.G283E	ENST00000250448	NM_004496.3	283	gGg/gAg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061154	38061154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	91	292	0	ENST00000250448.2:c.835G>A	p.Gly279Arg	p.G279R	ENST00000250448	NM_004496.3	279	Ggg/Agg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38064160	38064160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	249	656	1	ENST00000250448.2:c.18G>T	p.Lys6Asn	p.K6N	ENST00000250448	NM_004496.3	6	aaG/aaT																																																																															
CDH1	999	MSKCC	GRCh37	16	68857509	68857516	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGAATT	GAGGAATT	-			P-0020220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	202	631	0	ENST00000261769.5:c.2144_2151del	p.Gly715AlafsTer30	p.G715Afs*30	ENST00000261769	NM_004360.3	715	gGAGGAATT/g																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026323	48026323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	158	499	0	ENST00000234420.5:c.1201G>A	p.Asp401Asn	p.D401N	ENST00000234420	NM_000179.2	401	Gat/Aat																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730828	40730835	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCGGTC	CAGCGGTC	-			P-0020220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	54	879	0	ENST00000373198.4:c.3700_3707del	p.Asp1234ProfsTer22	p.D1234Pfs*22	ENST00000373198	NM_133170.3	1234	GACCGCTGc/c																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	363	971	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	366	828	3	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533676	63533676	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367697282		P-0020223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1278	81	648	0	ENST00000307078.5:c.1478C>T	p.Ser493Leu	p.S493L	ENST00000307078	NM_004655.3	493	tCg/tTg																																																																															
RB1	5925	MSKCC	GRCh37	13	48942670	48942671	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0020223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	34	488	0	ENST00000267163.4:c.1060_1061del	p.Gln354GlufsTer7	p.Q354Efs*7	ENST00000267163	NM_000321.2	353	ACa/a																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16041455	16041488	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCAAACCATGTCTTACCTTCCTCTCCAAGTATG	TGCAAACCATGTCTTACCTTCCTCTCCAAGTATG	-			P-0020223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	89	445	0	ENST00000268712.3:c.1391_1407+17del		p.X464_splice	ENST00000268712	NM_006311.3	464																																																																																
RARA	5914	MSKCC	GRCh37	17	38506052	38506052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	47	703	2	ENST00000254066.5:c.344G>T	p.Ser115Ile	p.S115I	ENST00000254066	NM_000964.3	115	aGc/aTc																																																																															
TP63	8626	MSKCC	GRCh37	3	189607161	189607161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	111	977	1	ENST00000264731.3:c.1540G>A	p.Gly514Arg	p.G514R	ENST00000264731	NM_003722.4	514	Gga/Aga																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748273	41748273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	403	915	0	ENST00000226382.2:c.496G>A	p.Ala166Thr	p.A166T	ENST00000226382	NM_003924.3	166	Gcg/Acg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69031684	69031684	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	68	719	1	ENST00000288368.4:c.3439A>T	p.Ser1147Cys	p.S1147C	ENST00000288368	NM_024870.2	1147	Agt/Tgt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641388	18641389	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	49	323	0	ENST00000266497.5:c.2393dup	p.Asn798LysfsTer5	p.N798Kfs*5	ENST00000266497		796	cta/ctAa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27102192	27102193	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	138	574	0	ENST00000324856.7:c.5119dup	p.Ser1707LysfsTer20	p.S1707Kfs*20	ENST00000324856	NM_006015.4	1706	-/A																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265643	152265644	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GT			P-0020225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	82	449	0	ENST00000206249.3:c.1096+1_1096+2dup		p.G366fs	ENST00000206249	NM_000125.3	366	ggc/gGTgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0020232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	125	1048	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0020232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	35	931	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591925	48591925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	28	728	1	ENST00000342988.3:c.1088G>A	p.Cys363Tyr	p.C363Y	ENST00000342988	NM_005359.5	363	tGt/tAt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423505	88423505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	78	868	1	ENST00000360948.2:c.2330C>T	p.Thr777Met	p.T777M	ENST00000360948	NM_001012338.2	777	aCg/aTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711945	89711945	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	68	774	0	ENST00000371953.3:c.563A>G	p.Tyr188Cys	p.Y188C	ENST00000371953	NM_000314.4	188	tAt/tGt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911605	114911606	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAGAAAGCGCGGCCATC			P-0020232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	83	828	0	ENST00000543371.1:c.1126_1142dup	p.Asn381LysfsTer116	p.N381Kfs*116	ENST00000543371	NM_001198531.1	375	aaa/aAAGAAAGCGCGGCCATCaa																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867058	45867058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	78	741	2	ENST00000391945.4:c.1061C>T	p.Pro354Leu	p.P354L	ENST00000391945	NM_000400.3	354	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112173325	112173325	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	23	483	0	ENST00000257430.4:c.2034delT	p.Ser678ArgfsTer40	p.S678Rfs*40	ENST00000257430	NM_000038.5	678	agT/ag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419986	41419986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	78	778	2	ENST00000373198.4:c.335G>A	p.Arg112His	p.R112H	ENST00000373198	NM_133170.3	112	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	67	986	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0020234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	93	723	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0020234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	105	978	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118924	70118926	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0020234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	53	1294	0	ENST00000245479.2:c.499_501del	p.Lys167del	p.K167del	ENST00000245479	NM_000346.3	166	AAG/-																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266063	41266577	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	GGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTT	GGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTT	-			P-0020234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	49	550	0	ENST00000349496.5:c.65_379del		p.X22_splice	ENST00000349496	NM_001904.3	22	gcGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTg/gcg																																																																															
KDR	3791	MSKCC	GRCh37	4	55980304	55980304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	66	877	2	ENST00000263923.4:c.787C>A	p.Pro263Thr	p.P263T	ENST00000263923	NM_002253.2	263	Cct/Act																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0020236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	207	890	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0020236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	394	778	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932865	36932865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	97	1180	1	ENST00000361632.4:c.2006G>T	p.Ser669Ile	p.S669I	ENST00000361632		669	aGc/aTc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001231	150001231	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	246	930	1	ENST00000253339.5:c.2373G>C	p.Met791Ile	p.M791I	ENST00000253339		791	atG/atC																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179385	56179386	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	73	359	0	ENST00000399503.3:c.3702dup	p.Gln1235ThrfsTer4	p.Q1235Tfs*4	ENST00000399503	NM_005921.1	1233	gca/gcAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179459	56179460	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0020241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	103	503	0	ENST00000399503.3:c.3773dup	p.Tyr1258Ter	p.Y1258*	ENST00000399503	NM_005921.1	1258	tat/tAat																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	243	566	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	68	389	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	99	399	1	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	46	222	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	88	433	1	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	77	425	1	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	59	310	1	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	226	870	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395776	45395776	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	118	437	0	ENST00000262160.6:c.358C>T	p.Arg120Ter	p.R120*	ENST00000262160	NM_005901.5	120	Cga/Tga																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	305	767	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	99	437	4	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	333	546	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
RB1	5925	MSKCC	GRCh37	13	48951156	48951156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	76	453	0	ENST00000267163.4:c.1318G>A	p.Glu440Lys	p.E440K	ENST00000267163	NM_000321.2	440	Gaa/Aaa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16022738	16022738	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	116	655	0	ENST00000268712.3:c.1914delA	p.Gly639ValfsTer2	p.G639Vfs*2	ENST00000268712	NM_006311.3	638	aaA/aa																																																																															
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	255	884	1	ENST00000575354.2:c.3743delC	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030692	48030692	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	119	461	4	ENST00000234420.5:c.3312delT	p.Phe1104LeufsTer11	p.F1104Lfs*11	ENST00000234420	NM_000179.2	1102	acT/ac																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98268793	98268793	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	217	659	1	ENST00000331920.6:c.290delA	p.Asn97ThrfsTer20	p.N97Tfs*20	ENST00000331920	NM_000264.3	97	aAc/ac																																																																															
BLM	641	MSKCC	GRCh37	15	91347484	91347484	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	192	726	6	ENST00000355112.3:c.3651delA	p.Lys1217AsnfsTer62	p.K1217Nfs*62	ENST00000355112	NM_000057.2	1216	Aaa/aa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120326	94120326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	96	324	1	ENST00000369303.4:c.725C>T	p.Ala242Val	p.A242V	ENST00000369303	NM_004440.3	242	gCg/gTg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645694	12645694	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs3730271		P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	105	356	0	ENST00000251849.4:c.775T>C	p.Ser259Pro	p.S259P	ENST00000251849	NM_002880.3	259	Tcc/Ccc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513282	44513287	+	inframe_deletion	In_Frame_Del	DEL	CCACCG	CCACCG	-			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	207	856	1	ENST00000291552.4:c.648_653delCGGTGG	p.Gly222_Gly223del	p.G222_G223del	ENST00000291552	NM_006758.2	216	ggCGGTGGt/ggt																																																																															
MED12	9968	MSKCC	GRCh37	X	70344134	70344134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	499	792	0	ENST00000374080.3:c.1870C>T	p.Leu624Phe	p.L624F	ENST00000374080		624	Ctt/Ttt																																																																															
ATRX	546	MSKCC	GRCh37	X	76855029	76855029	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	130	618	1	ENST00000373344.5:c.5807A>G	p.Lys1936Arg	p.K1936R	ENST00000373344	NM_000489.3	1936	aAg/aGg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9783217	9783217	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140820694		P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	220	683	1	ENST00000377346.4:c.2461C>T	p.Arg821Cys	p.R821C	ENST00000377346	NM_005026.3	821	Cgc/Tgc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	36	108	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6043349	6043349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	85	281	1	ENST00000265849.7:c.325del	p.Glu109LysfsTer3	p.E109Kfs*3	ENST00000265849	NM_000535.5	109	Gaa/aa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384651	31384651	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	226	767	3	ENST00000328111.2:c.1359del	p.Leu454SerfsTer136	p.L454Sfs*136	ENST00000328111	NM_006892.3	451	gaG/ga																																																																															
APC	324	MSKCC	GRCh37	5	112116587	112116587	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	82	486	0	ENST00000257430.4:c.636del	p.Lys212AsnfsTer7	p.K212Nfs*7	ENST00000257430	NM_000038.5	211	gAa/ga																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346220	152346220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	171	622	8	ENST00000359321.1:c.350del	p.Leu117TrpfsTer17	p.L117Wfs*17	ENST00000359321	NM_005431.1	117	tTg/tg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992076	72992076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	229	670	0	ENST00000268489.5:c.1969G>A	p.Gly657Ser	p.G657S	ENST00000268489	NM_006885.3	657	Ggc/Agc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	144	841	10	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868072	56868072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	185	519	0	ENST00000308159.5:c.1570C>T	p.Arg524Trp	p.R524W	ENST00000308159	NM_014669.4	524	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240767	55240767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	298	869	4	ENST00000275493.2:c.2011C>T	p.Arg671Cys	p.R671C	ENST00000275493	NM_005228.3	671	Cgc/Tgc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78858811	78858811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	225	636	1	ENST00000306801.3:c.1846C>T	p.Arg616Cys	p.R616C	ENST00000306801	NM_020761.2	616	Cgc/Tgc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435894	149435894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	210	636	0	ENST00000286301.3:c.2330G>A	p.Arg777Gln	p.R777Q	ENST00000286301	NM_005211.3	777	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223175	36223175	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1143	120	1107	6	ENST00000222270.7:c.5730del	p.Arg1911AspfsTer23	p.R1911Dfs*23	ENST00000222270	NM_014727.1	1909	Ccc/cc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256430	16256430	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	184	655	0	ENST00000375759.3:c.3695A>G	p.His1232Arg	p.H1232R	ENST00000375759	NM_015001.2	1232	cAt/cGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023708	27023708	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	178	685	0	ENST00000324856.7:c.817del	p.Ala273ProfsTer90	p.A273Pfs*90	ENST00000324856	NM_006015.4	272	Ggg/gg																																																																															
MYCL1	4610	MSKCC	GRCh37	1	40367000	40367000	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	232	874	1	ENST00000397332.2:c.197T>C	p.Val66Ala	p.V66A	ENST00000397332	NM_001033082.2	66	gTg/gCg																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46532635	46532635	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	106	491	0	ENST00000262741.5:c.443A>G	p.Tyr148Cys	p.Y148C	ENST00000262741	NM_003629.3	148	tAc/tGc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400951	72400951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	131	506	1	ENST00000357731.5:c.220C>T	p.Arg74Trp	p.R74W	ENST00000357731	NM_173808.2	74	Cgg/Tgg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78428478	78428478	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	104	632	2	ENST00000370768.2:c.1321C>T	p.Gln441Ter	p.Q441*	ENST00000370768	NM_003902.3	441	Caa/Taa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162688861	162688861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	176	675	0	ENST00000367921.3:c.8T>C	p.Leu3Pro	p.L3P	ENST00000367921	NM_006182.2	3	cTg/cCg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175819	176175819	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	116	584	0	ENST00000367669.3:c.296T>C	p.Val99Ala	p.V99A	ENST00000367669	NM_022457.5	99	gTa/gCa																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206658600	206658600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	222	573	0	ENST00000367120.3:c.1573C>T	p.Arg525Trp	p.R525W	ENST00000367120	NM_014002.3	525	Cgg/Tgg																																																																															
PARP1	142	MSKCC	GRCh37	1	226570820	226570820	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	201	717	1	ENST00000366794.5:c.1076del	p.Pro359GlnfsTer22	p.P359Qfs*22	ENST00000366794	NM_001618.3	359	cCa/ca																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100750	8100750	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11567901		P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	214	766	1	ENST00000346208.3:c.724G>A	p.Gly242Ser	p.G242S	ENST00000346208		242	Ggc/Agc																																																																															
RET	5979	MSKCC	GRCh37	10	43608300	43608300	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	259	919	0	ENST00000355710.3:c.1649-1G>T		p.X550_splice	ENST00000355710	NM_020975.4	550																																																																																
RPS6KA4	8986	MSKCC	GRCh37	11	64138166	64138166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	311	849	3	ENST00000334205.4:c.2089G>A	p.Ala697Thr	p.A697T	ENST00000334205	NM_003942.2	697	Gca/Aca																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94197281	94197282	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	97	580	0	ENST00000323929.3:c.1222dup	p.Thr408AsnfsTer49	p.T408Nfs*49	ENST00000323929	NM_005591.3	408	aca/aAca																																																																															
ATM	472	MSKCC	GRCh37	11	108159759	108159759	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	112	617	0	ENST00000278616.4:c.4165A>G	p.Thr1389Ala	p.T1389A	ENST00000278616	NM_000051.3	1389	Aca/Gca																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18658349	18658350	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	152	520	0	ENST00000266497.5:c.3155_3156del	p.Phe1052TrpfsTer52	p.F1052Wfs*52	ENST00000266497		1052	TTt/t																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434683	49434683	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	296	912	0	ENST00000301067.7:c.6870A>C	p.Glu2290Asp	p.E2290D	ENST00000301067	NM_003482.3	2290	gaA/gaC																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56493782	56493782	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	182	499	0	ENST00000267101.3:c.3098T>C	p.Leu1033Pro	p.L1033P	ENST00000267101	NM_001982.3	1033	cTa/cCa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495453	56495453	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	270	782	0	ENST00000267101.3:c.3643A>C	p.Ser1215Arg	p.S1215R	ENST00000267101	NM_001982.3	1215	Agt/Cgt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858929	57858929	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	252	880	1	ENST00000228682.2:c.429del	p.Ser146ArgfsTer19	p.S146Rfs*19	ENST00000228682	NM_005269.2	142	cAa/ca																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121437363	121437363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	285	910	1	ENST00000257555.6:c.1704del	p.Ser569AlafsTer91	p.S569Afs*91	ENST00000257555		567	gtC/gt																																																																															
FLT1	2321	MSKCC	GRCh37	13	29068932	29068932	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	54	467	0	ENST00000282397.4:c.49T>C	p.Cys17Arg	p.C17R	ENST00000282397	NM_002019.4	17	Tgt/Cgt																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873826	35873826	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	110	363	0	ENST00000216797.5:c.25del	p.Gln9ArgfsTer12	p.Q9Rfs*12	ENST00000216797	NM_020529.2	9	Cag/ag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2100412	2100412	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	106	675	0	ENST00000219476.3:c.150G>T	p.Met50Ile	p.M50I	ENST00000219476	NM_000548.3	50	atG/atT																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245873	41245873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	138	670	0	ENST00000357654.3:c.1675G>T	p.Gly559Cys	p.G559C	ENST00000357654	NM_007294.3	559	Ggt/Tgt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2164212	2164212	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	41	601	0	ENST00000398665.3:c.29A>C	p.Lys10Thr	p.K10T	ENST00000398665	NM_032482.2	10	aAg/aCg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099222	4099222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	189	726	2	ENST00000262948.5:c.896G>T	p.Arg299Met	p.R299M	ENST00000262948	NM_030662.3	299	aGg/aTg																																																																															
INSR	3643	MSKCC	GRCh37	19	7170698	7170699	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	277	1007	1	ENST00000302850.5:c.1332_1333del	p.His444GlnfsTer14	p.H444Qfs*14	ENST00000302850	NM_000208.2	444	caCAac/caac																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031119	11031119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	285	838	1	ENST00000327064.4:c.1204G>A	p.Val402Met	p.V402M	ENST00000327064	NM_199141.1	402	Gtg/Atg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101895	11101895	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	59	887	1	ENST00000344626.4:c.1315T>C	p.Tyr439His	p.Y439H	ENST00000344626	NM_003072.3	439	Tac/Cac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276713	15276713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	268	808	1	ENST00000263388.2:c.5552G>A	p.Arg1851His	p.R1851H	ENST00000263388	NM_000435.2	1851	cGt/cAt																																																																															
ERF	2077	MSKCC	GRCh37	19	42754077	42754077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	234	696	0	ENST00000222329.4:c.275G>A	p.Arg92His	p.R92H	ENST00000222329	NM_006494.2	92	cGc/cAc																																																																															
CIC	23152	MSKCC	GRCh37	19	42798427	42798428	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	286	868	0	ENST00000575354.2:c.4303dup	p.Asp1435GlyfsTer6	p.D1435Gfs*6	ENST00000575354	NM_015125.3	1433	gag/gaGg																																																																															
CIC	23152	MSKCC	GRCh37	19	42799129	42799129	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	274	915	0	ENST00000575354.2:c.4613C>A	p.Pro1538Gln	p.P1538Q	ENST00000575354	NM_015125.3	1538	cCg/cAg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902109	50902109	+	start_lost,splice_region_variant	Translation_Start_Site	SNP	A	A	G			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	62	463	0	ENST00000440232.2:c.1A>G	p.Met1?	p.M1?	ENST00000440232	NM_002691.3	1	Atg/Gtg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39234251	39234251	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	39	769	0	ENST00000402219.2:c.2594T>C	p.Leu865Ser	p.L865S	ENST00000402219	NM_005633.3	865	tTg/tCg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662562	227662562	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	44	555	0	ENST00000305123.5:c.893G>T	p.Gly298Val	p.G298V	ENST00000305123	NM_005544.2	298	gGg/gTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662776	227662776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	252	766	2	ENST00000305123.5:c.679C>T	p.Arg227Cys	p.R227C	ENST00000305123	NM_005544.2	227	Cgt/Tgt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37090420	37090421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	181	683	0	ENST00000231790.2:c.2018_2019dup	p.Glu674LeufsTer110	p.E674Lfs*110	ENST00000231790	NM_000249.3	672	tgt/tgTTt																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84383908	84383908	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	134	750	0	ENST00000321945.7:c.944A>G	p.His315Arg	p.H315R	ENST00000321945	NM_139076.2	315	cAc/cGc																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84393376	84393376	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	90	473	0	ENST00000321945.7:c.281del	p.Lys94ArgfsTer4	p.K94Rfs*4	ENST00000321945	NM_139076.2	94	aAg/ag																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143159123	143159123	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	81	563	0	ENST00000262992.4:c.730T>C	p.Ser244Pro	p.S244P	ENST00000262992	NM_001101669.1	244	Tct/Cct																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56152566	56152566	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	71	322	0	ENST00000399503.3:c.622C>T	p.Arg208Ter	p.R208*	ENST00000399503	NM_005921.1	208	Cga/Tga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161183	56161183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	90	565	0	ENST00000399503.3:c.1052G>A	p.Arg351His	p.R351H	ENST00000399503	NM_005921.1	351	cGt/cAt																																																																															
MSH3	4437	MSKCC	GRCh37	5	80074558	80074558	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	162	661	0	ENST00000265081.6:c.2338T>C	p.Phe780Leu	p.F780L	ENST00000265081	NM_002439.4	780	Ttt/Ctt																																																																															
RASA1	5921	MSKCC	GRCh37	5	86645168	86645168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	66	297	0	ENST00000274376.6:c.1240C>T	p.Arg414Trp	p.R414W	ENST00000274376	NM_002890.2	414	Cgg/Tgg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057561	180057561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	233	752	1	ENST00000261937.6:c.394G>A	p.Val132Met	p.V132M	ENST00000261937	NM_182925.4	132	Gtg/Atg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148524316	148524316	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	24	544	0	ENST00000320356.2:c.668T>A	p.Ile223Asn	p.I223N	ENST00000320356	NM_004456.4	223	aTt/aAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878944	151878944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	58	591	0	ENST00000262189.6:c.6001G>A	p.Ala2001Thr	p.A2001T	ENST00000262189	NM_170606.2	2001	Gct/Act																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104748	69104748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	167	583	1	ENST00000288368.4:c.4592G>A	p.Ser1531Asn	p.S1531N	ENST00000288368	NM_024870.2	1531	aGc/aAc																																																																															
NBN	4683	MSKCC	GRCh37	8	90949263	90949263	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	19	372	0	ENST00000265433.3:c.2225A>G	p.Asp742Gly	p.D742G	ENST00000265433	NM_002485.4	742	gAt/gGt																																																																															
NBN	4683	MSKCC	GRCh37	8	90958369	90958369	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	71	424	0	ENST00000265433.3:c.2069del	p.Lys690ArgfsTer19	p.K690Rfs*19	ENST00000265433	NM_002485.4	690	aAg/ag																																																																															
SYK	6850	MSKCC	GRCh37	9	93606343	93606343	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200078199		P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	203	724	0	ENST00000375746.1:c.163G>A	p.Val55Met	p.V55M	ENST00000375746	NM_001174167.1	55	Gtg/Atg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44936025	44936025	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	305	813	1	ENST00000377967.4:c.2786C>A	p.Pro929His	p.P929H	ENST00000377967	NM_021140.2	929	cCt/cAt																																																																															
ATRX	546	MSKCC	GRCh37	X	76813089	76813089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	113	774	2	ENST00000373344.5:c.6532C>T	p.Arg2178Trp	p.R2178W	ENST00000373344	NM_000489.3	2178	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0020245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	381	949	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0020245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	253	894	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486247	8486247	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139171396		P-0020245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	77	470	0	ENST00000356435.5:c.2570G>A	p.Arg857His	p.R857H	ENST00000356435		857	cGt/cAt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520761	176520761	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141530067		P-0020245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	118	645	3	ENST00000292408.4:c.1504G>A	p.Val502Ile	p.V502I	ENST00000292408	NM_213647.1	502	Gtc/Atc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026606	48026606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	26	525	1	ENST00000234420.5:c.1484G>A	p.Arg495Gln	p.R495Q	ENST00000234420	NM_000179.2	495	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175608	112175608	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	182	450	0	ENST00000257430.4:c.4317del	p.Pro1440HisfsTer33	p.P1440Hfs*33	ENST00000257430	NM_000038.5	1439	ccT/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0020251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	384	1015	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0020251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	248	592	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0020251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	290	899	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584709	48584709	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0020251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	204	529	0	ENST00000342988.3:c.788-1G>C		p.X263_splice	ENST00000342988	NM_005359.5	263																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178947190	178947190	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	119	353	0	ENST00000263967.3:c.2626A>C	p.Thr876Pro	p.T876P	ENST00000263967	NM_006218.2	876	Aca/Cca																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	181	993	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	93	484	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	132	819	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779211	3779211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783507		P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	37	440	4	ENST00000262367.5:c.5837del	p.Pro1946HisfsTer30	p.P1946Hfs*30	ENST00000262367	NM_004380.2	1946	cCa/ca																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	142	641	2	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779218	3779218	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	43	419	0	ENST00000262367.5:c.5830G>C	p.Ala1944Pro	p.A1944P	ENST00000262367	NM_004380.2	1944	Gcc/Ccc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	173	855	2	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9778972	9778972	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	112	567	0	ENST00000377346.4:c.1241C>T	p.Ala414Val	p.A414V	ENST00000377346	NM_005026.3	414	gCg/gTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40899079	40899079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	149	839	1	ENST00000373198.4:c.2191G>A	p.Ala731Thr	p.A731T	ENST00000373198	NM_133170.3	731	Gcc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	206	1028	2	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	81	400	2	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2491273	2491273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	179	867	7	ENST00000355716.4:c.316C>T	p.Arg106Cys	p.R106C	ENST00000355716	NM_003820.2	106	Cgc/Tgc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244454	46244454	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	144	725	0	ENST00000334344.6:c.2552del	p.Pro851HisfsTer4	p.P851Hfs*4	ENST00000334344	NM_152641.2	850	Ccc/cc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287315	46287315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	192	802	0	ENST00000334344.6:c.5260C>T	p.Arg1754Ter	p.R1754*	ENST00000334344	NM_152641.2	1754	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	253	597	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	167	755	2	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	94	525	5	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533732	63533733	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGG			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	70	584	0	ENST00000307078.5:c.1419_1421dup	p.His474dup	p.H474dup	ENST00000307078	NM_004655.3	474	cat/caCCAt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17951085	17951085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	182	935	0	ENST00000458235.1:c.1208G>A	p.Arg403His	p.R403H	ENST00000458235	NM_000215.3	403	cGc/cAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212570063	212570063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	193	702	1	ENST00000342788.4:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000342788	NM_005235.2	393	cGg/cAg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	172	862	7	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11193166	11193166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	157	764	3	ENST00000361445.4:c.5335G>A	p.Ala1779Thr	p.A1779T	ENST00000361445	NM_004958.3	1779	Gcc/Acc																																																																															
TET2	54790	MSKCC	GRCh37	4	106157385	106157385	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	88	455	0	ENST00000380013.4:c.2290del	p.Gln764LysfsTer49	p.Q764Kfs*49	ENST00000380013	NM_001127208.2	762	caC/ca																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	214	1014	13	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	157	791	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647133	23647133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	241	1098	3	ENST00000261584.4:c.734C>T	p.Ala245Val	p.A245V	ENST00000261584	NM_024675.3	245	gCg/gTg																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38614463	38614463	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	159	764	2	ENST00000299084.4:c.234del	p.Asp79ThrfsTer42	p.D79Tfs*42	ENST00000299084	NM_152594.2	77	Aaa/aa																																																																															
MITF	4286	MSKCC	GRCh37	3	69990386	69990386	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	67	439	0	ENST00000352241.4:c.667-1G>A		p.X223_splice	ENST00000352241	NM_198159.2	223																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118374702	118374702	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	104	629	0	ENST00000534358.1:c.8095C>T	p.Arg2699Ter	p.R2699*	ENST00000534358	NM_005933.3	2699	Cga/Tga																																																																															
SLX4	84464	MSKCC	GRCh37	16	3634851	3634853	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	163	826	0	ENST00000294008.3:c.4656_4658del	p.Lys1552del	p.K1552del	ENST00000294008	NM_032444.2	1552	aaGAAc/aac																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073431	8073432	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	196	790	0	ENST00000377482.5:c.1227dup	p.Phe410IlefsTer3	p.F410Ifs*3	ENST00000377482	NM_018948.3	409	-/A																																																																															
MTOR	2475	MSKCC	GRCh37	1	11298590	11298590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	161	778	1	ENST00000361445.4:c.1871G>A	p.Arg624His	p.R624H	ENST00000361445	NM_004958.3	624	cGc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258893	16258893	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs74842071		P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	193	1014	0	ENST00000375759.3:c.6158A>C	p.Asn2053Thr	p.N2053T	ENST00000375759	NM_015001.2	2053	aAc/aCc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099401	27099401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	139	762	1	ENST00000324856.7:c.3638C>A	p.Pro1213His	p.P1213H	ENST00000324856	NM_006015.4	1213	cCc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106507	27106507	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	190	904	0	ENST00000324856.7:c.6121del	p.Val2041Ter	p.V2041*	ENST00000324856	NM_006015.4	2040	Ggg/gg																																																																															
STK40	83931	MSKCC	GRCh37	1	36807387	36807387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	180	912	0	ENST00000373129.3:c.1277C>T	p.Ala426Val	p.A426V	ENST00000373129	NM_032017.1	426	gCc/gTc																																																																															
CBL	867	MSKCC	GRCh37	11	119103164	119103164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	158	622	1	ENST00000264033.4:c.202C>T	p.Arg68Trp	p.R68W	ENST00000264033	NM_005188.3	68	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420109	49420109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	113	695	1	ENST00000301067.7:c.15640C>T	p.Arg5214Cys	p.R5214C	ENST00000301067	NM_003482.3	5214	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420204	49420204	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	180	855	4	ENST00000301067.7:c.15545del	p.Gly5182AlafsTer61	p.G5182Afs*61	ENST00000301067	NM_003482.3	5182	gGc/gc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428410	49428411	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1284500089		P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	139	959	0	ENST00000301067.7:c.10394dup	p.Pro3466ThrfsTer2	p.P3466Tfs*2	ENST00000301067	NM_003482.3	3465	gga/ggGa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440431	49440431	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	200	916	3	ENST00000301067.7:c.4379delC	p.Pro1460HisfsTer46	p.P1460Hfs*46	ENST00000301067	NM_003482.3	1460	cCa/ca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906853	32906853	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	181	843	0	ENST00000380152.3:c.1238T>C	p.Leu413Pro	p.L413P	ENST00000380152		413	cTa/cCa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396618	30396618	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	38	316	0	ENST00000331968.5:c.101G>C	p.Gly34Ala	p.G34A	ENST00000331968	NM_002742.2	34	gGg/gCg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95590886	95590886	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	127	563	0	ENST00000343455.3:c.1023del	p.His341GlnfsTer12	p.H341Qfs*12	ENST00000343455	NM_177438.2	341	caC/ca																																																																															
MGA	23269	MSKCC	GRCh37	15	42054402	42054403	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	142	547	0	ENST00000219905.7:c.7592dupA	p.Lys2532GlufsTer6	p.K2532Efs*6	ENST00000219905	NM_001164273.1	2529	aga/agAa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500302	99500302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	160	898	1	ENST00000268035.6:c.3735G>A	p.Met1245Ile	p.M1245I	ENST00000268035	NM_000875.3	1245	atG/atA																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396539	396539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	207	1073	2	ENST00000262320.3:c.487G>A	p.Ala163Thr	p.A163T	ENST00000262320	NM_003502.3	163	Gcc/Acc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134310	2134310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	136	985	1	ENST00000219476.3:c.4087G>A	p.Val1363Ile	p.V1363I	ENST00000219476	NM_000548.3	1363	Gtc/Atc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3652290	3652290	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	129	780	1	ENST00000294008.3:c.779del	p.Pro260LeufsTer11	p.P260Lfs*11	ENST00000294008	NM_032444.2	260	cCt/ct																																																																															
CDH1	999	MSKCC	GRCh37	16	68842456	68842456	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	185	796	0	ENST00000261769.5:c.517A>T	p.Lys173Ter	p.K173*	ENST00000261769	NM_004360.3	173	Aaa/Taa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81971441	81971441	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	145	778	0	ENST00000359376.3:c.3131G>T	p.Arg1044Met	p.R1044M	ENST00000359376	NM_002661.3	1044	aGg/aTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440750	56440750	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	137	703	1	ENST00000407977.2:c.468del	p.Leu157Ter	p.L157*	ENST00000407977		156	ggG/gg																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66511562	66511562	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1224297486		P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	89	476	0	ENST00000358598.2:c.22G>A	p.Ala8Thr	p.A8T	ENST00000358598	NM_212471.2	8	Gcc/Acc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281310	15281310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	185	933	1	ENST00000263388.2:c.4946C>T	p.Ala1649Val	p.A1649V	ENST00000263388	NM_000435.2	1649	gCg/gTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953878	17953878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	175	1001	0	ENST00000458235.1:c.524G>A	p.Arg175Gln	p.R175Q	ENST00000458235	NM_000215.3	175	cGa/cAa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218451	36218451	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	111	799	2	ENST00000222270.7:c.4235del	p.Gly1412AlafsTer10	p.G1412Afs*10	ENST00000222270	NM_014727.1	1410	caG/ca																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222872	36222872	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200461439		P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	195	1149	0	ENST00000222270.7:c.5501G>A	p.Arg1834His	p.R1834H	ENST00000222270	NM_014727.1	1834	cGc/cAc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158634702	158634702	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201452185		P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	123	547	1	ENST00000263640.3:c.484G>A	p.Val162Met	p.V162M	ENST00000263640	NM_001105.4	162	Gtg/Atg																																																																															
SRC	6714	MSKCC	GRCh37	20	36028589	36028589	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	151	916	0	ENST00000358208.4:c.931C>A	p.Leu311Met	p.L311M	ENST00000358208		311	Ctg/Atg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42842590	42842590	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	141	923	1	ENST00000398585.3:c.1267delG	p.Ala423ProfsTer12	p.A423Pfs*12	ENST00000398585	NM_001135099.1	423	Gcc/cc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187522550	187522550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	197	707	0	ENST00000441802.2:c.11513G>A	p.Ser3838Asn	p.S3838N	ENST00000441802	NM_005245.3	3838	aGc/aAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540374	187540374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370340394		P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	96	642	1	ENST00000441802.2:c.7366G>A	p.Ala2456Thr	p.A2456T	ENST00000441802	NM_005245.3	2456	Gcc/Acc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541507	187541507	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758885671		P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	122	559	0	ENST00000441802.2:c.6233C>T	p.Ala2078Val	p.A2078V	ENST00000441802	NM_005245.3	2078	gCg/gTg																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753348	57753348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	168	705	0	ENST00000274289.3:c.776G>A	p.Cys259Tyr	p.C259Y	ENST00000274289	NM_006622.3	259	tGt/tAt																																																																															
APC	324	MSKCC	GRCh37	5	112173306	112173307	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	101	389	0	ENST00000257430.4:c.2016_2017del	p.His672GlnfsTer7	p.H672Qfs*7	ENST00000257430	NM_000038.5	672	cAT/c																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797290	32797290	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	192	919	1	ENST00000374899.4:c.1819C>A	p.Leu607Met	p.L607M	ENST00000374899	NM_018833.2	607	Ctg/Atg																																																																															
SESN1	27244	MSKCC	GRCh37	6	109321801	109321802	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	230	1010	0	ENST00000436639.2:c.621dup	p.Lys208GlnfsTer20	p.K208Qfs*20	ENST00000436639	NM_014454.2	207	-/C																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137522041	137522041	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	115	530	0	ENST00000367739.4:c.838del	p.Ser280AlafsTer2	p.S280Afs*2	ENST00000367739	NM_000416.2	280	Agc/gc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157505447	157505447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	132	708	1	ENST00000346085.5:c.3428A>G	p.Lys1143Arg	p.K1143R	ENST00000346085	NM_020732.3	1143	aAg/aGg																																																																															
MET	4233	MSKCC	GRCh37	7	116403177	116403178	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	165	797	0	ENST00000397752.3:c.2443dup	p.Leu815ProfsTer18	p.L815Pfs*18	ENST00000397752	NM_000245.2	813	ctc/ctCc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148544339	148544339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	233	940	1	ENST00000320356.2:c.52C>T	p.Arg18Cys	p.R18C	ENST00000320356	NM_004456.4	18	Cgt/Tgt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133981	38133981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	185	947	0	ENST00000317025.8:c.3905del	p.Asn1302MetfsTer4	p.N1302Mfs*4	ENST00000317025	NM_023034.1	1302	aAt/at																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500868	8500869	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	154	789	0	ENST00000356435.5:c.2013dup	p.Tyr672IlefsTer11	p.Y672Ifs*11	ENST00000356435		671	-/A																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044965	47044965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	193	1171	0	ENST00000329236.7:c.2057G>A	p.Cys686Tyr	p.C686Y	ENST00000329236	NM_001204466.1	686	tGc/tAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0020259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	409	959	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0020259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	13	589	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056575	26056575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75040909		P-0020259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	23	379	0	ENST00000343677.2:c.82G>A	p.Ala28Thr	p.A28T	ENST00000343677	NM_005319.3	28	Gct/Act																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434974	110434974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	71	825	0	ENST00000375856.3:c.3427G>A	p.Gly1143Ser	p.G1143S	ENST00000375856	NM_003749.2	1143	Ggc/Agc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041205	47041205	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	99	1437	0	ENST00000329236.7:c.1400del	p.Pro467LeufsTer159	p.P467Lfs*159	ENST00000329236	NM_001204466.1	467	Cct/ct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	14	607	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	535	952	17	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106481	27106482	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	356	814	13	ENST00000324856.7:c.6093dup	p.Glu2032Ter	p.E2032*	ENST00000324856	NM_006015.4	2031	tat/taTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421027	49421027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	230	632	4	ENST00000301067.7:c.14722G>A	p.Ala4908Thr	p.A4908T	ENST00000301067	NM_003482.3	4908	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	60	1031	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732996	30732996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934869		P-0020264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	36	635	0	ENST00000359013.4:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000359013	NM_001024847.2	562	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	66	1056	1	ENST00000269305.4:c.731G>T	p.Gly244Val	p.G244V	ENST00000269305	NM_001126112.2	244	gGc/gTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0020266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	18	350	1				ENST00000310581	NM_198253.2																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0020266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	40	489	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
CBFB	865	MSKCC	GRCh37	16	67063320	67063320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	17	353	0	ENST00000412916.2:c.10G>T	p.Val4Phe	p.V4F	ENST00000412916		4	Gtc/Ttc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0020266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	51	602	1	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
PPARG	5468	MSKCC	GRCh37	3	12447410	12447410	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	43	789	0	ENST00000287820.6:c.649G>C	p.Glu217Gln	p.E217Q	ENST00000287820	NM_015869.4	217	Gag/Cag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115971	8115972	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	165	522	1	ENST00000346208.3:c.1318dup	p.Thr440AsnfsTer67	p.T440Nfs*67	ENST00000346208		439	-/A																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10273879	10273880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	152	1202	0	ENST00000330684.3:c.389dup	p.Ala131ArgfsTer7	p.A131Rfs*7	ENST00000330684	NM_001134407.1	130	ggc/ggGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48586265	48586265	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	127	946	0	ENST00000342988.3:c.934C>A	p.Pro312Thr	p.P312T	ENST00000342988	NM_005359.5	312	Cct/Act																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984835	11984835	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	99	722	0	ENST00000353533.5:c.382del	p.Met128TrpfsTer24	p.M128Wfs*24	ENST00000353533	NM_003010.3	127	atA/at																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029404	16029408	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTT	TTCTT	-			P-0020269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	92	1112	0	ENST00000268712.3:c.1622_1626del	p.Lys541ArgfsTer20	p.K541Rfs*20	ENST00000268712	NM_006311.3	541	aAAGAA/a																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0020272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	16	915	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0020272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	80	631	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
NF2	4771	MSKCC	GRCh37	22	30038242	30038242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	77	928	0	ENST00000338641.4:c.415G>A	p.Val139Met	p.V139M	ENST00000338641	NM_000268.3	139	Gtg/Atg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160758	56160762	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TCAGG	TCAGG	-			P-0020272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	41	592	0	ENST00000399503.3:c.1033_1035+2del		p.X345_splice	ENST00000399503	NM_005921.1	345																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56177505	56177514	+	frameshift_variant	Frame_Shift_Del	DEL	GGTTACTACA	GGTTACTACA	-			P-0020272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	67	671	0	ENST00000399503.3:c.2479_2488del	p.Val827TyrfsTer9	p.V827Yfs*9	ENST00000399503	NM_005921.1	826	atGGTTACTACA/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0020273-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			710	68	991	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7984460	7984460	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020273-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			566	36	860	0	ENST00000319144.4:c.398G>C	p.Arg133Thr	p.R133T	ENST00000319144	NM_001139.2	133	aGa/aCa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47158113	47158113	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0020273-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			470	31	818	0	ENST00000409792.3:c.4586G>T	p.Cys1529Phe	p.C1529F	ENST00000409792	NM_014159.6	1529	tGt/tTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	116	532	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KIT	3815	MSKCC	GRCh37	4	55602662	55602662	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0020288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	80	420	0	ENST00000288135.5:c.2485-2A>T		p.X829_splice	ENST00000288135	NM_000222.2	829																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27105512	27105512	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0020294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	176	517	0	ENST00000324856.7:c.5125-2A>C		p.X1709_splice	ENST00000324856	NM_006015.4	1709																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0020301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	403	794	1	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123217380	123217380	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	352	755	0	ENST00000218089.9:c.3034C>T	p.Arg1012Ter	p.R1012*	ENST00000218089	NM_001042749.1	1012	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927979	178927984	+	inframe_deletion	In_Frame_Del	DEL	CTGTCC	CTGTCC	-			P-0020301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	207	416	0	ENST00000263967.3:c.1257_1262del	p.His419_Pro421delinsGln	p.H419_P421delinsQ	ENST00000263967	NM_006218.2	419	caCTGTCCa/caa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998891	11998891	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0020301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	184	459	0	ENST00000353533.5:c.394-1G>C		p.X132_splice	ENST00000353533	NM_003010.3	132																																																																																
EP300	2033	MSKCC	GRCh37	22	41574348	41574348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	357	781	0	ENST00000263253.7:c.6633C>A	p.Phe2211Leu	p.F2211L	ENST00000263253	NM_001429.3	2211	ttC/ttA																																																																															
MET	4233	MSKCC	GRCh37	7	116398565	116398565	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	354	805	0	ENST00000397752.3:c.2155G>C	p.Glu719Gln	p.E719Q	ENST00000397752	NM_000245.2	719	Gag/Cag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845551	151845551	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	386	764	2	ENST00000262189.6:c.13461C>A	p.Cys4487Ter	p.C4487*	ENST00000262189	NM_170606.2	4487	tgC/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0020302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	280	689	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0020302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	168	466	2	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783886	50783886	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	259	813	0	ENST00000398568.2:c.277A>G	p.Asn93Asp	p.N93D	ENST00000398568	NM_001042412.1	93	Aat/Gat																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468517	89468517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	105	416	0	ENST00000336596.2:c.2051G>A	p.Arg684Gln	p.R684Q	ENST00000336596	NM_005233.5	684	cGa/cAa																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841241	15841241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	79	325	0	ENST00000307771.7:c.1325G>A	p.Arg442Gln	p.R442Q	ENST00000307771	NM_005089.3	442	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	13	536	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0020311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	31	793	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29556852	29556852	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0020311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	26	516	0	ENST00000358273.4:c.2851-1G>A		p.X951_splice	ENST00000358273	NM_001042492.2	951																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	40	547	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178511	56178511	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	35	437	0	ENST00000399503.3:c.3484G>T	p.Glu1162Ter	p.E1162*	ENST00000399503	NM_005921.1	1162	Gaa/Taa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177812	56177813	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0020317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	27	538	0	ENST00000399503.3:c.2789_2790del	p.Arg930ThrfsTer10	p.R930Tfs*10	ENST00000399503	NM_005921.1	929	GAg/g																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845504	151845504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	58	865	1	ENST00000262189.6:c.13508G>T	p.Cys4503Phe	p.C4503F	ENST00000262189	NM_170606.2	4503	tGc/tTc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938464	44938464	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	77	821	2	ENST00000377967.4:c.3012G>T	p.Leu1004Phe	p.L1004F	ENST00000377967	NM_021140.2	1004	ttG/ttT																																																																															
TP53	7157	MSKCC	GRCh37	17	7579357	7579363	+	frameshift_variant	Frame_Shift_Del	DEL	ACGGAAA	ACGGAAA	TTT			P-0020327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	236	769	5	ENST00000269305.4:c.324_330delinsAAA	p.Phe109AsnfsTer13	p.F109Nfs*13	ENST00000269305	NM_001126112.2	108	ggTTTCCGT/ggAAA																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	179	743	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	83	321	1	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427721	72427721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	222	604	0	ENST00000477973.2:c.767G>A	p.Val257Ile	p.V257I	ENST00000477973	NM_012234.5	257	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112177787	112177787	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	105	486	0	ENST00000257430.4:c.6496C>T	p.Arg2166Ter	p.R2166*	ENST00000257430	NM_000038.5	2166	Cga/Tga																																																																															
TET1	80312	MSKCC	GRCh37	10	70332337	70332337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	250	696	2	ENST00000373644.4:c.242G>A	p.Arg81His	p.R81H	ENST00000373644	NM_030625.2	81	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	286	788	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023559	27023560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	88	787	1	ENST00000324856.7:c.671dup	p.Pro225AlafsTer175	p.P225Afs*175	ENST00000324856	NM_006015.4	222	tac/taCc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	335	734	0	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	219	673	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023327	27023327	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	66	367	0	ENST00000324856.7:c.437del	p.Pro146GlnfsTer86	p.P146Qfs*86	ENST00000324856	NM_006015.4	145	Ccc/cc																																																																															
EP300	2033	MSKCC	GRCh37	22	41572252	41572254	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TCT	TCT	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	89	709	0	ENST00000263253.7:c.4785_4787delCTT	p.Phe1596del	p.F1596del	ENST00000263253	NM_001429.3	1594	gTCTtc/gtc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	103	623	1	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	82	626	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
HRAS	3265	MSKCC	GRCh37	11	534288	534288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	149	712	0	ENST00000311189.7:c.35G>A	p.Gly12Asp	p.G12D	ENST00000311189		12	gGc/gAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28913322	28913322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	116	910	3	ENST00000282397.4:c.2471G>A	p.Arg824Gln	p.R824Q	ENST00000282397	NM_002019.4	824	cGg/cAg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	179	283	9	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821890	72821890	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	88	506	0	ENST00000268489.5:c.10285del	p.Arg3429ValfsTer56	p.R3429Vfs*56	ENST00000268489	NM_006885.3	3429	Cgt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	129	769	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	174	960	9	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
ATRX	546	MSKCC	GRCh37	X	76890149	76890150	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	187	832	0	ENST00000373344.5:c.4744dup	p.Thr1582AsnfsTer19	p.T1582Nfs*19	ENST00000373344	NM_000489.3	1582	aca/aAca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281250	15281250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1184522923		P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	328	925	4	ENST00000263388.2:c.5006G>A	p.Arg1669His	p.R1669H	ENST00000263388	NM_000435.2	1669	cGc/cAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	185	851	4	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923087	39923087	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	155	792	1	ENST00000378444.4:c.3621delA	p.Lys1207AsnfsTer31	p.K1207Nfs*31	ENST00000378444	NM_001123385.1	1207	aaA/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1218	221	980	0	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																																																															
BRAF	673	MSKCC	GRCh37	7	140501260	140501260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	190	764	0	ENST00000288602.6:c.812G>A	p.Arg271His	p.R271H	ENST00000288602	NM_004333.4	271	cGt/cAt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375194	31375194	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	124	826	2	ENST00000328111.2:c.596del	p.Gly199AlafsTer27	p.G199Afs*27	ENST00000328111	NM_006892.3	197	caG/ca																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961011	15961011	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142717545		P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	199	576	0	ENST00000268712.3:c.6209C>T	p.Ser2070Leu	p.S2070L	ENST00000268712	NM_006311.3	2070	tCg/tTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527648	157527648	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	130	799	3	ENST00000346085.5:c.5373A>G	p.Ile1791Met	p.I1791M	ENST00000346085	NM_020732.3	1791	atA/atG																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101117	27101117	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	196	879	1	ENST00000324856.7:c.4403del	p.Pro1468LeufsTer13	p.P1468Lfs*13	ENST00000324856	NM_006015.4	1467	Ccc/cc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966872	25966873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	240	645	1	ENST00000435504.4:c.2333dupC	p.Val779SerfsTer25	p.V779Sfs*25	ENST00000435504		778	cca/ccCa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500845	8500845	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	209	749	1	ENST00000356435.5:c.2037del	p.Lys679AsnfsTer9	p.K679Nfs*9	ENST00000356435		679	aaA/aa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954022	32954023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1305653361		P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	158	710	8	ENST00000380152.3:c.9097dup	p.Thr3033AsnfsTer11	p.T3033Nfs*11	ENST00000380152		3030	aca/acAa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021211	31021211	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	283	774	1	ENST00000375687.4:c.1210C>T	p.Arg404Ter	p.R404*	ENST00000375687	NM_015338.5	404	Cga/Tga																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940112	49940112	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	260	766	3	ENST00000296474.3:c.931del	p.Ala311ProfsTer27	p.A311Pfs*27	ENST00000296474	NM_002447.2	311	Gcc/cc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16012207	16012207	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	254	679	0	ENST00000268712.3:c.2075A>T	p.Glu692Val	p.E692V	ENST00000268712	NM_006311.3	692	gAa/gTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748583	40748583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	82	624	3	ENST00000373198.4:c.2933C>T	p.Ala978Val	p.A978V	ENST00000373198	NM_133170.3	978	gCg/gTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	323	926	7	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546835	9546835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	169	594	1	ENST00000353224.5:c.1187C>T	p.Ser396Phe	p.S396F	ENST00000353224	NM_177990.2	396	tCc/tTc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1918681	1918681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	193	773	1	ENST00000382891.5:c.844G>A	p.Val282Ile	p.V282I	ENST00000382891	NM_133335.3	282	Gta/Ata																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432420	49432420	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	182	823	0	ENST00000301067.7:c.8719del	p.Tyr2907ThrfsTer3	p.Y2907Tfs*3	ENST00000301067	NM_003482.3	2907	Tac/ac																																																																															
MALT1	10892	MSKCC	GRCh37	18	56390435	56390435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	227	625	2	ENST00000348428.3:c.1174C>T	p.Arg392Cys	p.R392C	ENST00000348428	NM_006785.3	392	Cgt/Tgt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9778839	9778839	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	135	897	0	ENST00000377346.4:c.1108del	p.Val370CysfsTer28	p.V370Cfs*28	ENST00000377346	NM_005026.3	370	Gtg/tg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023010	27023010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	32	86	0	ENST00000324856.7:c.116C>A	p.Ala39Glu	p.A39E	ENST00000324856	NM_006015.4	39	gCg/gAg																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598294	28598294	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	350	979	0	ENST00000253063.3:c.266A>G	p.Tyr89Cys	p.Y89C	ENST00000253063	NM_031459.4	89	tAc/tGc																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115280601	115280601	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	292	851	0	ENST00000438362.2:c.430G>T	p.Glu144Ter	p.E144*	ENST00000438362	NM_001242891.1	144	Gaa/Taa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111138	193111138	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	94	596	0	ENST00000367435.3:c.671T>C	p.Ile224Thr	p.I224T	ENST00000367435	NM_024529.4	224	aTt/aCt																																																																															
FH	2271	MSKCC	GRCh37	1	241675272	241675272	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	61	719	0	ENST00000366560.3:c.550del	p.Ser184AlafsTer18	p.S184Afs*18	ENST00000366560	NM_000143.3	184	Agc/gc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246021902	246021902	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	340	900	0	ENST00000388985.4:c.972C>A	p.Asn324Lys	p.N324K	ENST00000388985		324	aaC/aaA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720852	89720853	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GATACTT			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	106	457	0	ENST00000371953.3:c.1004_1010dup	p.Phe337LeufsTer8	p.F337Lfs*8	ENST00000371953	NM_000314.4	335	cga/cGATACTTga																																																																															
SUFU	51684	MSKCC	GRCh37	10	104268945	104268945	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	180	793	0	ENST00000369902.3:c.202T>A	p.Leu68Met	p.L68M	ENST00000369902	NM_016169.3	68	Ttg/Atg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274711	123274711	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	190	835	0	ENST00000358487.5:c.1207A>T	p.Thr403Ser	p.T403S	ENST00000358487	NM_000141.4	403	Acg/Tcg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274833	123274833	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	198	592	0	ENST00000358487.5:c.1085C>T	p.Ala362Val	p.A362V	ENST00000358487	NM_000141.4	362	gCg/gTg																																																																															
CCND1	595	MSKCC	GRCh37	11	69457949	69457949	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	233	777	0	ENST00000227507.2:c.349A>G	p.Ile117Val	p.I117V	ENST00000227507	NM_053056.2	117	Atc/Gtc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374039	118374039	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	228	613	1	ENST00000534358.1:c.7432G>T	p.Gly2478Cys	p.G2478C	ENST00000534358	NM_005933.3	2478	Ggc/Tgc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46298717	46298717	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	182	580	0	ENST00000334344.6:c.5364A>T	p.Arg1788Ser	p.R1788S	ENST00000334344	NM_152641.2	1788	agA/agT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431797	49431798	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	95	742	0	ENST00000301067.7:c.9341_9342del	p.Val3114AlafsTer3	p.V3114Afs*3	ENST00000301067	NM_003482.3	3114	gTG/g																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434562	49434562	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	160	844	4	ENST00000301067.7:c.6991delC	p.Leu2331Ter	p.L2331*	ENST00000301067	NM_003482.3	2331	Ctg/tg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434839	49434839	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1191	170	968	0	ENST00000301067.7:c.6714del	p.Ser2239ProfsTer25	p.S2239Pfs*25	ENST00000301067	NM_003482.3	2238	ccC/cc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495104	56495104	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	105	854	0	ENST00000267101.3:c.3461A>C	p.Glu1154Ala	p.E1154A	ENST00000267101	NM_001982.3	1154	gAg/gCg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856113	111856122	+	frameshift_variant	Frame_Shift_Del	DEL	ACGCGCCGCT	ACGCGCCGCT	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	97	686	0	ENST00000341259.2:c.164_173del	p.His55ArgfsTer139	p.H55Rfs*139	ENST00000341259	NM_005475.2	55	cACGCGCCGCTg/cg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434524	121434524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	200	830	0	ENST00000257555.6:c.1288G>T	p.Gly430Cys	p.G430C	ENST00000257555		430	Ggt/Tgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133215778	133215778	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	334	831	0	ENST00000320574.5:c.5485T>C	p.Ser1829Pro	p.S1829P	ENST00000320574	NM_006231.2	1829	Tcc/Ccc																																																																															
POLE	5426	MSKCC	GRCh37	12	133219459	133219459	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1174	100	943	0	ENST00000320574.5:c.4675A>G	p.Thr1559Ala	p.T1559A	ENST00000320574	NM_006231.2	1559	Act/Gct																																																																															
POLE	5426	MSKCC	GRCh37	12	133253132	133253132	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	209	714	0	ENST00000320574.5:c.909G>T	p.Gln303His	p.Q303H	ENST00000320574	NM_006231.2	303	caG/caT																																																																															
FLT3	2322	MSKCC	GRCh37	13	28623783	28623783	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	134	810	0	ENST00000241453.7:c.871G>T	p.Ala291Ser	p.A291S	ENST00000241453	NM_004119.2	291	Gca/Tca																																																																															
FLT1	2321	MSKCC	GRCh37	13	28893605	28893605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	107	645	0	ENST00000282397.4:c.3241G>A	p.Asp1081Asn	p.D1081N	ENST00000282397	NM_002019.4	1081	Gac/Aac																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524568	103524568	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	213	422	4	ENST00000355739.4:c.2705del	p.Asn902IlefsTer4	p.N902Ifs*4	ENST00000355739	NM_000123.3	900	cAa/ca																																																																															
GREM1	26585	MSKCC	GRCh37	15	33022973	33022973	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	100	544	2	ENST00000300177.4:c.82G>T	p.Gly28Trp	p.G28W	ENST00000300177	NM_001191322.1	28	Ggg/Tgg																																																																															
GREM1	26585	MSKCC	GRCh37	15	33022989	33022990	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	74	566	0	ENST00000300177.4:c.104dup	p.Pro36AlafsTer8	p.P36Afs*8	ENST00000300177	NM_001191322.1	33	atc/atCc																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38631981	38631981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	150	966	5	ENST00000299084.4:c.471delT	p.Gln158SerfsTer16	p.Q158Sfs*16	ENST00000299084	NM_152594.2	156	cTt/ct																																																																															
MGA	23269	MSKCC	GRCh37	15	41991104	41991104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	223	683	1	ENST00000219905.7:c.2057C>T	p.Ser686Phe	p.S686F	ENST00000219905	NM_001164273.1	686	tCt/tTt																																																																															
MGA	23269	MSKCC	GRCh37	15	42041419	42041419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	254	807	1	ENST00000219905.7:c.5614G>A	p.Gly1872Arg	p.G1872R	ENST00000219905	NM_001164273.1	1872	Ggg/Agg																																																																															
B2M	567	MSKCC	GRCh37	15	45007690	45007690	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	128	636	0	ENST00000558401.1:c.137A>G	p.Tyr46Cys	p.Y46C	ENST00000558401	NM_004048.2	46	tAt/tGt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678547	88678547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	144	523	2	ENST00000360948.2:c.989delC	p.Pro330HisfsTer84	p.P330Hfs*84	ENST00000360948	NM_001012338.2	330	cCa/ca																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99452077	99452077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	63	601	0	ENST00000268035.6:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000268035	NM_000875.3	471	Cgc/Tgc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2131634	2131634	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	145	870	0	ENST00000219476.3:c.3649A>G	p.Ser1217Gly	p.S1217G	ENST00000219476	NM_000548.3	1217	Agc/Ggc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2215907	2215907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	77	799	0	ENST00000326181.6:c.109G>A	p.Ala37Thr	p.A37T	ENST00000326181	NM_032271.2	37	Gcc/Acc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778713	3778713	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	181	855	0	ENST00000262367.5:c.6335A>G	p.Gln2112Arg	p.Q2112R	ENST00000262367	NM_004380.2	2112	cAg/cGg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781802	3781802	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	108	743	0	ENST00000262367.5:c.4865A>T	p.Tyr1622Phe	p.Y1622F	ENST00000262367	NM_004380.2	1622	tAt/tTt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788558	3788558	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	67	556	0	ENST00000262367.5:c.4394+2T>G		p.X1465_splice	ENST00000262367	NM_004380.2	1465																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3808944	3808944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	193	863	0	ENST00000262367.5:c.3280C>T	p.Leu1094Phe	p.L1094F	ENST00000262367	NM_004380.2	1094	Ctc/Ttc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641509	23641510	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	208	971	0	ENST00000261584.4:c.1965dup	p.Pro656SerfsTer7	p.P656Sfs*7	ENST00000261584	NM_024675.3	655	-/T																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645887	67645887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	172	870	1	ENST00000264010.4:c.815G>A	p.Ser272Asn	p.S272N	ENST00000264010	NM_006565.3	272	aGt/aAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993930	72993930	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	144	889	0	ENST00000268489.5:c.115A>G	p.Met39Val	p.M39V	ENST00000268489	NM_006885.3	39	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	284	906	0	ENST00000269305.4:c.818del	p.Arg273LeufsTer72	p.R273Lfs*72	ENST00000269305	NM_001126112.2	273	cGt/ct																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30293209	30293209	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	209	664	0	ENST00000322652.5:c.503del	p.Asn168MetfsTer22	p.N168Mfs*22	ENST00000322652	NM_015355.2	167	Aaa/aa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435926	56435926	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759290047		P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	210	577	0	ENST00000407977.2:c.1211G>A	p.Arg404His	p.R404H	ENST00000407977		404	cGc/cAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492791	56492792	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	313	873	0	ENST00000407977.2:c.147_148del	p.Arg49SerfsTer25	p.R49Sfs*25	ENST00000407977		49	agAGtg/agtg																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59934572	59934572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	190	511	0	ENST00000259008.2:c.226G>A	p.Val76Ile	p.V76I	ENST00000259008	NM_032043.2	76	Gta/Ata																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603011	48603011	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	88	450	0	ENST00000342988.3:c.1312T>C	p.Phe438Leu	p.F438L	ENST00000342988	NM_005359.5	438	Ttt/Ctt																																																																															
CARM1	10498	MSKCC	GRCh37	19	11015752	11015752	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	217	528	3	ENST00000327064.4:c.346G>A	p.Asp116Asn	p.D116N	ENST00000327064	NM_199141.1	116	Gat/Aat																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031523	11031523	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	146	1022	0	ENST00000327064.4:c.1438A>G	p.Thr480Ala	p.T480A	ENST00000327064	NM_199141.1	480	Acg/Gcg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132435	11132435	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	114	872	0	ENST00000358026.2:c.2651A>T	p.His884Leu	p.H884L	ENST00000358026	NM_001128849.1	884	cAc/cTc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281520	15281520	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	120	853	0	ENST00000263388.2:c.4853A>C	p.Glu1618Ala	p.E1618A	ENST00000263388	NM_000435.2	1618	gAg/gCg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17389766	17389766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	169	969	1	ENST00000359435.4:c.899C>T	p.Ala300Val	p.A300V	ENST00000359435	NM_001033549.1	300	gCc/gTc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271341	18271341	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	331	792	0	ENST00000222254.8:c.383T>C	p.Leu128Pro	p.L128P	ENST00000222254	NM_005027.3	128	cTg/cCg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212612	36212612	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1133	179	989	0	ENST00000222270.7:c.2363T>C	p.Val788Ala	p.V788A	ENST00000222270	NM_014727.1	788	gTa/gCa																																																																															
BBC3	27113	MSKCC	GRCh37	19	47725151	47725151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	365	915	2	ENST00000449228.1:c.593C>T	p.Pro198Leu	p.P198L	ENST00000449228	NM_001127240.2	198	cCg/cTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905999	50905999	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	237	744	0	ENST00000440232.2:c.970+1G>A		p.X324_splice	ENST00000440232	NM_002691.3	324																																																																																
POLD1	5424	MSKCC	GRCh37	19	50918151	50918151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	327	863	2	ENST00000440232.2:c.2468G>A	p.Arg823His	p.R823H	ENST00000440232	NM_002691.3	823	cGc/cAc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467428	25467428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	283	772	2	ENST00000264709.3:c.1648G>A	p.Gly550Arg	p.G550R	ENST00000264709	NM_175629.2	550	Gga/Aga																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630430	47630430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	314	799	0	ENST00000233146.2:c.100G>A	p.Val34Met	p.V34M	ENST00000233146	NM_000251.2	34	Gtg/Atg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023271	31023271	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	326	822	0	ENST00000375687.4:c.2756T>C	p.Ile919Thr	p.I919T	ENST00000375687	NM_015338.5	919	aTa/aCa																																																																															
EP300	2033	MSKCC	GRCh37	22	41565533	41565533	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	142	756	1	ENST00000263253.7:c.4199G>T	p.Ser1400Ile	p.S1400I	ENST00000263253	NM_001429.3	1400	aGt/aTt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49927952	49927952	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	159	873	0	ENST00000296474.3:c.3776T>C	p.Leu1259Pro	p.L1259P	ENST00000296474	NM_002447.2	1259	cTg/cCg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934053	49934053	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	132	801	1	ENST00000296474.3:c.2359A>T	p.Thr787Ser	p.T787S	ENST00000296474	NM_002447.2	787	Acc/Tcc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52668777	52668777	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	115	724	0	ENST00000394830.3:c.1142A>C	p.Asp381Ala	p.D381A	ENST00000394830	NM_018313.4	381	gAt/gCt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670324	134670324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	118	620	0	ENST00000398015.3:c.235C>T	p.Arg79Trp	p.R79W	ENST00000398015	NM_004441.4	79	Cgg/Tgg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1952803	1952803	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144714547		P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	193	606	3	ENST00000382891.5:c.1886C>T	p.Ser629Leu	p.S629L	ENST00000382891	NM_133335.3	629	tCg/tTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217148	66217148	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	215	817	0	ENST00000273854.3:c.2467del	p.Arg823GlyfsTer28	p.R823Gfs*28	ENST00000273854	NM_004439.5	823	Cgg/gg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38958816	38958816	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	107	627	0	ENST00000357387.3:c.2296A>T	p.Ile766Phe	p.I766F	ENST00000357387	NM_152756.3	766	Att/Ttt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38963040	38963040	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	62	651	0	ENST00000357387.3:c.1504A>G	p.Ile502Val	p.I502V	ENST00000357387	NM_152756.3	502	Att/Gtt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189395	56189395	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	124	867	0	ENST00000399503.3:c.4427A>G	p.His1476Arg	p.H1476R	ENST00000399503	NM_005921.1	1476	cAt/cGt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79960995	79960995	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	129	727	0	ENST00000265081.6:c.392C>A	p.Ser131Ter	p.S131*	ENST00000265081	NM_002439.4	131	tCa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112164671	112164671	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	49	412	0	ENST00000257430.4:c.1743+2T>C		p.X581_splice	ENST00000257430	NM_000038.5	581																																																																																
NSD1	64324	MSKCC	GRCh37	5	176719097	176719097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	95	437	0	ENST00000439151.2:c.6401A>G	p.Lys2134Arg	p.K2134R	ENST00000439151	NM_022455.4	2134	aAg/aGg																																																																															
IRF4	3662	MSKCC	GRCh37	6	401624	401624	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	101	639	0	ENST00000380956.4:c.946G>C	p.Val316Leu	p.V316L	ENST00000380956	NM_001195286.1	316	Gtc/Ctc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910782	29910782	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	132	798	0	ENST00000376809.5:c.322T>C	p.Tyr108His	p.Y108H	ENST00000376809	NM_002116.7	108	Tac/Cac																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816544	32816544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	371	966	4	ENST00000354258.4:c.1631G>A	p.Arg544His	p.R544H	ENST00000354258	NM_000593.5	544	cGc/cAc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6035163	6035163	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	160	576	0	ENST00000265849.7:c.903+2T>C		p.X301_splice	ENST00000265849	NM_000535.5	301																																																																																
EGFR	1956	MSKCC	GRCh37	7	55221773	55221773	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	134	769	1	ENST00000275493.2:c.817A>G	p.Thr273Ala	p.T273A	ENST00000275493	NM_005228.3	273	Acc/Gcc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55270246	55270246	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	331	807	0	ENST00000275493.2:c.3199C>T	p.Gln1067Ter	p.Q1067*	ENST00000275493	NM_005228.3	1067	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151848622	151848622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	68	626	0	ENST00000262189.6:c.12571G>A	p.Ala4191Thr	p.A4191T	ENST00000262189	NM_170606.2	4191	Gca/Aca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900017	151900017	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	63	742	0	ENST00000262189.6:c.4092+2T>C		p.X1364_splice	ENST00000262189	NM_170606.2	1364																																																																																
PREX2	80243	MSKCC	GRCh37	8	68864700	68864700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	263	595	0	ENST00000288368.4:c.71G>A	p.Arg24His	p.R24H	ENST00000288368	NM_024870.2	24	cGc/cAc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141583011	141583011	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1225	299	873	1	ENST00000220592.5:c.236T>C	p.Val79Ala	p.V79A	ENST00000220592	NM_012154.3	79	gTc/gCc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249447	110249447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	194	951	0	ENST00000374672.4:c.1126C>T	p.Pro376Ser	p.P376S	ENST00000374672	NM_004235.4	376	Cca/Tca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396353	139396353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	128	821	3	ENST00000277541.6:c.5485G>A	p.Val1829Met	p.V1829M	ENST00000277541	NM_017617.3	1829	Gtg/Atg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399519	139399519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	142	760	2	ENST00000277541.6:c.4624G>A	p.Asp1542Asn	p.D1542N	ENST00000277541	NM_017617.3	1542	Gac/Aac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139407952	139407952	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	202	923	3	ENST00000277541.6:c.2245A>T	p.Asn749Tyr	p.N749Y	ENST00000277541	NM_017617.3	749	Aac/Tac																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139802604	139802604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	325	852	2	ENST00000247668.2:c.449G>A	p.Arg150His	p.R150H	ENST00000247668	NM_021138.3	150	cGc/cAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39916525	39916525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	155	925	2	ENST00000378444.4:c.4478G>A	p.Arg1493Gln	p.R1493Q	ENST00000378444	NM_001123385.1	1493	cGg/cAg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933523	39933523	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	191	860	0	ENST00000378444.4:c.1076A>G	p.Lys359Arg	p.K359R	ENST00000378444	NM_001123385.1	359	aAg/aGg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934231	39934231	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	136	903	0	ENST00000378444.4:c.368A>G	p.Gln123Arg	p.Q123R	ENST00000378444	NM_001123385.1	123	cAg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030482	47030482	+	intron_variant	Intron	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	116	864	0	ENST00000329236.7:c.201+1585A>G		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
STAG2	10735	MSKCC	GRCh37	X	123215268	123215268	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	85	731	0	ENST00000218089.9:c.2814T>A	p.Phe938Leu	p.F938L	ENST00000218089	NM_001042749.1	938	ttT/ttA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0020337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	125	567	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48942685	48942685	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913301		P-0020337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	126	563	1	ENST00000267163.4:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000267163	NM_000321.2	358	Cga/Tga																																																																															
SRC	6714	MSKCC	GRCh37	20	36012660	36012660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	15	261	0	ENST00000358208.4:c.104C>T	p.Ser35Leu	p.S35L	ENST00000358208		35	tCg/tTg																																																																															
CD276	80381	MSKCC	GRCh37	15	73996161	73996161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	266	882	5	ENST00000318443.5:c.895G>A	p.Glu299Lys	p.E299K	ENST00000318443	NM_001024736.1	299	Gaa/Aaa																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976544	18976544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	222	933	0	ENST00000262803.5:c.3194C>T	p.Ser1065Phe	p.S1065F	ENST00000262803	NM_002911.3	1065	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0020338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	59	985	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0020338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	62	724	4	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882049	36882050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	54	1074	0	ENST00000358127.4:c.963dupC	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	-/C																																																																															
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	26	499	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874217	155874217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	107	935	1	ENST00000368323.3:c.314G>A	p.Arg105His	p.R105H	ENST00000368323	NM_006912.5	105	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	207	713	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0020339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	272	752	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911141	32911141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	32	424	0	ENST00000380152.3:c.2649C>A	p.Phe883Leu	p.F883L	ENST00000380152		883	ttC/ttA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591889	48591889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	192	573	0	ENST00000342988.3:c.1052A>G	p.Asp351Gly	p.D351G	ENST00000342988	NM_005359.5	351	gAt/gGt																																																																															
TET2	54790	MSKCC	GRCh37	4	106197126	106197126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	20	416	0	ENST00000380013.4:c.5459G>A	p.Ser1820Asn	p.S1820N	ENST00000380013	NM_001127208.2	1820	aGt/aAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974800	21974801	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0020339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	82	265	0	ENST00000304494.5:c.25_26dup	p.Met9IlefsTer18	p.M9Ifs*18	ENST00000304494	NM_000077.4	9	atg/atATg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0020340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	330	926	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729180	66729180	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	60	1103	0	ENST00000307102.5:c.388T>C	p.Tyr130His	p.Y130H	ENST00000307102	NM_002755.3	130	Tat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0020340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	163	1038	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120512242	120512242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	115	912	0	ENST00000256646.2:c.1000G>T	p.Asp334Tyr	p.D334Y	ENST00000256646	NM_024408.3	334	Gac/Tac																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551447	150551447	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	141	1216	0	ENST00000369026.2:c.560G>T	p.Arg187Leu	p.R187L	ENST00000369026	NM_021960.4	187	cGg/cTg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851408	156851408	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	125	1053	1	ENST00000524377.1:c.2365C>A	p.Pro789Thr	p.P789T	ENST00000524377	NM_002529.3	789	Cct/Act																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30194741	30194741	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0020340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	72	722	1	ENST00000331968.5:c.403+1del		p.X135_splice	ENST00000331968	NM_002742.2	135																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37883113	37883113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	115	1215	1	ENST00000269571.5:c.3016C>T	p.Arg1006Cys	p.R1006C	ENST00000269571		1006	Cgc/Tgc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554358	63554359	+	inframe_insertion	In_Frame_Ins	INS	-	-	TAC			P-0020340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	41	1021	0	ENST00000307078.5:c.380_381insGTA	p.Thr127_Leu128insTyr	p.T127_L128insY	ENST00000307078	NM_004655.3	127	act/acGTAt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78727982	78727982	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	42	537	1	ENST00000306801.3:c.827G>T	p.Arg276Leu	p.R276L	ENST00000306801	NM_020761.2	276	cGc/cTc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39728880	39728880	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	71	471	1	ENST00000361337.2:c.1160G>T	p.Ser387Ile	p.S387I	ENST00000361337	NM_003286.2	387	aGc/aTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40877410	40877410	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	88	909	0	ENST00000373198.4:c.2286C>A	p.Asn762Lys	p.N762K	ENST00000373198	NM_133170.3	762	aaC/aaA																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72842185	72842185	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0020340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	41	438	0	ENST00000325599.8:c.1063A>T	p.Lys355Ter	p.K355*	ENST00000325599	NM_018130.2	355	Aaa/Taa																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202803	128202803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	37	1018	0	ENST00000341105.2:c.917G>T	p.Trp306Leu	p.W306L	ENST00000341105	NM_032638.4	306	tGg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112175382	112175382	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	23	440	2	ENST00000257430.4:c.4091G>T	p.Ser1364Ile	p.S1364I	ENST00000257430	NM_000038.5	1364	aGt/aTt																																																																															
HGF	3082	MSKCC	GRCh37	7	81335630	81335630	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	68	719	0	ENST00000222390.5:c.1730C>A	p.Ser577Ter	p.S577*	ENST00000222390	NM_000601.4	577	tCa/tAa																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882039	36882039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	52	1034	1	ENST00000358127.4:c.974G>A	p.Gly325Asp	p.G325D	ENST00000358127	NM_001280556.1	325	gGc/gAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	29	375	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68855991	68855992	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATTCTTCTGTGAGAGGA			P-0020344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	126	875	0	ENST00000261769.5:c.1802_1818dup	p.Pro607SerfsTer12	p.P607Sfs*12	ENST00000261769	NM_004360.3	600	ata/atATTCTTCTGTGAGAGGAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	131	703	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0020347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	119	809	7	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247411	71247411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	140	694	1	ENST00000318789.4:c.122C>T	p.Thr41Met	p.T41M	ENST00000318789	NM_032682.5	41	aCg/aTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220505	1220505	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0020347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	100	783	0	ENST00000326873.7:c.597+1G>T		p.X199_splice	ENST00000326873	NM_000455.4	199																																																																																
TP53	7157	MSKCC	GRCh37	17	7578523	7578523	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	320	1192	0	ENST00000269305.4:c.407A>C	p.Gln136Pro	p.Q136P	ENST00000269305	NM_001126112.2	136	cAa/cCa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	32	404	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692790	89692790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	93	531	0	ENST00000371953.3:c.274G>T	p.Asp92Tyr	p.D92Y	ENST00000371953	NM_000314.4	92	Gac/Tac																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71945628	71945643	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTGCAGTGGTCTTC	AAGTGCAGTGGTCTTC	-			P-0020348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	128	854	0	ENST00000298229.2:c.2385_2400del	p.Lys795AsnfsTer45	p.K795Nfs*45	ENST00000298229	NM_001567.3	795	aAAGTGCAGTGGTCTTCa/aa																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871640	35871640	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	62	575	0	ENST00000216797.5:c.866A>G	p.Tyr289Cys	p.Y289C	ENST00000216797	NM_020529.2	289	tAt/tGt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554509	63554509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778517452		P-0020348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	49	768	1	ENST00000307078.5:c.230G>A	p.Arg77Gln	p.R77Q	ENST00000307078	NM_004655.3	77	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228622	36228622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	116	1081	3	ENST00000222270.7:c.7636G>A	p.Glu2546Lys	p.E2546K	ENST00000222270	NM_014727.1	2546	Gag/Aag																																																																															
SDHA	6389	MSKCC	GRCh37	5	228310	228310	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	71	296	0	ENST00000264932.6:c.632A>G	p.Tyr211Cys	p.Y211C	ENST00000264932	NM_004168.2	211	tAt/tGt																																																																															
ATM	472	MSKCC	GRCh37	11	108114749	108114749	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	231	829	0	ENST00000278616.4:c.566G>C	p.Arg189Thr	p.R189T	ENST00000278616	NM_000051.3	189	aGa/aCa																																																																															
ARAF	369	MSKCC	GRCh37	X	47428238	47428238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	230	1011	0	ENST00000377045.4:c.1198C>A	p.Arg400Ser	p.R400S	ENST00000377045	NM_001654.4	400	Cgc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	767	922	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	105	964	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0020360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	451	1120	2	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160760	56160761	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0020360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	109	544	0	ENST00000399503.3:c.1035+1dup		p.Q345fs	ENST00000399503	NM_005921.1	345	cag/caGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0020365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	392	925	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0020365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	104	623	2	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2130180	2130180	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	209	884	1	ENST00000219476.3:c.3412C>T	p.Arg1138Ter	p.R1138*	ENST00000219476	NM_000548.3	1138	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	300	785	1	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441800	49441802	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0020365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	175	854	0	ENST00000301067.7:c.4182_4184del	p.Leu1395del	p.L1395del	ENST00000301067	NM_003482.3	1394	ctCCTt/ctt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913482	32913482	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	249	771	0	ENST00000380152.3:c.4990A>T	p.Ile1664Phe	p.I1664F	ENST00000380152		1664	Att/Ttt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103510585	103510624	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	GAAATGTAAATTTCATGGTGCTGTGATTTTATCTTTACAG	GAAATGTAAATTTCATGGTGCTGTGATTTTATCTTTACAG	-			P-0020365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	41	272	0	ENST00000355739.4:c.529-37_531del		p.X177_splice	ENST00000355739	NM_000123.3	177																																																																																
APC	324	MSKCC	GRCh37	5	112175417	112175417	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	77	435	0	ENST00000257430.4:c.4126del	p.Tyr1376MetfsTer39	p.Y1376Mfs*39	ENST00000257430	NM_000038.5	1376	Tat/at																																																																															
ATRX	546	MSKCC	GRCh37	X	76907680	76907680	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	155	910	0	ENST00000373344.5:c.4481A>C	p.Gln1494Pro	p.Q1494P	ENST00000373344	NM_000489.3	1494	cAa/cCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	212	530	0	ENST00000263967.3:c.1034A>T	p.Asn345Ile	p.N345I	ENST00000263967	NM_006218.2	345	aAt/aTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0020383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	197	722	2	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	234	706	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112173835	112173838	+	frameshift_variant	Frame_Shift_Del	DEL	AGAT	AGAT	-			P-0020383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	127	480	0	ENST00000257430.4:c.2547_2550delTAGA	p.Asp849GlufsTer11	p.D849Efs*11	ENST00000257430	NM_000038.5	848	aaAGAT/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711272	114711273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	240	785	0	ENST00000543371.1:c.291dup	p.Pro98AlafsTer47	p.P98Afs*47	ENST00000543371	NM_001198531.1	96	aag/aaGg																																																																															
MSI1	4440	MSKCC	GRCh37	12	120783407	120783407	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	252	921	0	ENST00000257552.2:c.1076A>G	p.Asn359Ser	p.N359S	ENST00000257552	NM_002442.3	359	aAt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0020384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	105	980	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0020384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	87	978	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
AXL	558	MSKCC	GRCh37	19	41737136	41737136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	139	1279	1	ENST00000301178.4:c.716C>T	p.Thr239Met	p.T239M	ENST00000301178	NM_021913.4	239	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112137036	112137036	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	57	698	0	ENST00000257430.4:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000257430	NM_000038.5	264	Caa/Taa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8331723	8331723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	95	575	1	ENST00000356435.5:c.5393G>A	p.Arg1798Gln	p.R1798Q	ENST00000356435		1798	cGa/cAa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112253	115112253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	96	454	0	ENST00000257566.3:c.1487G>A	p.Gly496Asp	p.G496D	ENST00000257566	NM_016569.3	496	gGc/gAc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112924295	112924295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	70	1069	2	ENST00000351677.2:c.1241C>T	p.Thr414Met	p.T414M	ENST00000351677	NM_002834.3	414	aCg/aTg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981538	201981538	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	158	1338	1	ENST00000359651.3:c.452A>G	p.Gln151Arg	p.Q151R	ENST00000359651		151	cAg/cGg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112248	115112248	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	95	509	1	ENST00000257566.3:c.1492del	p.Leu498CysfsTer134	p.L498Cfs*134	ENST00000257566	NM_016569.3	498	Ctg/tg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410598	63410598	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	110	1152	0	ENST00000330258.3:c.2569C>T	p.Arg857Ter	p.R857*	ENST00000330258	NM_152424.3	857	Cga/Tga																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	324	593	0				ENST00000310581	NM_198253.2																																																																																	
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0020394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	387	645	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874101	155874101	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0020394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	176	534	0	ENST00000368323.3:c.429+1G>T		p.X143_splice	ENST00000368323	NM_006912.5	143																																																																																
NTRK1	4914	MSKCC	GRCh37	1	156851258	156851258	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	229	695	0	ENST00000524377.1:c.2215T>C	p.Cys739Arg	p.C739R	ENST00000524377	NM_002529.3	739	Tgc/Cgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416440	49416441	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0020394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	410	657	0	ENST00000301067.7:c.16270_16271del	p.Ile5424ArgfsTer34	p.I5424Rfs*34	ENST00000301067	NM_003482.3	5424	ATc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578502	7578511	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGGGCAGG	ACAGGGCAGG	-			P-0020394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	659	1039	0	ENST00000269305.4:c.419_428del	p.Thr140SerfsTer27	p.T140Sfs*27	ENST00000269305	NM_001126112.2	140	aCCTGCCCTGTg/ag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	290	766	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98215787	98215787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	271	750	0	ENST00000331920.6:c.3422C>T	p.Ala1141Val	p.A1141V	ENST00000331920	NM_000264.3	1141	gCg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087548	27087548	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	300	781	5	ENST00000324856.7:c.2122C>T	p.Gln708Ter	p.Q708*	ENST00000324856	NM_006015.4	708	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023849	27023869	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCCCCAGGACGGGGGCGCC	GGGCCCCAGGACGGGGGCGCC	CGCG			P-0020398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	201	458	3	ENST00000324856.7:c.955_975delinsCGCG	p.Gly319ArgfsTer75	p.G319Rfs*75	ENST00000324856	NM_006015.4	319	GGGCCCCAGGACGGGGGCGCC/CGCG																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495786	56495786	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	196	506	1	ENST00000267101.3:c.3976C>G	p.Pro1326Ala	p.P1326A	ENST00000267101	NM_001982.3	1326	Cct/Gct																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30093435	30093435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	271	683	0	ENST00000331968.5:c.1828G>A	p.Ala610Thr	p.A610T	ENST00000331968	NM_002742.2	610	Gct/Act																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184179	56184179	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	318	384	0	ENST00000399503.3:c.4384T>G	p.Phe1462Val	p.F1462V	ENST00000399503	NM_005921.1	1462	Ttt/Gtt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	58	564	0	ENST00000263967.3:c.1034A>T	p.Asn345Ile	p.N345I	ENST00000263967	NM_006218.2	345	aAt/aTt																																																																															
MET	4233	MSKCC	GRCh37	7	116412034	116412058	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCCAGAAGGTATATTTCAGTTTA	TTTCCAGAAGGTATATTTCAGTTTA	-			P-0020404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	109	1179	0	ENST00000397752.3:c.3021_3028+17del		p.X1007_splice	ENST00000397752	NM_000245.2	1007																																																																																
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0020406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	62	300	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913355		P-0020406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	79	470	0	ENST00000288602.6:c.1406G>T	p.Gly469Val	p.G469V	ENST00000288602	NM_004333.4	469	gGa/gTa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	1711	497	0	ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120459021	120459022	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0020406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	1037	731	4	ENST00000256646.2:c.6323_6324delinsTT	p.Ala2108Val	p.A2108V	ENST00000256646	NM_024408.3	2108	gCC/gTT																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741733	17741733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	451	755	2	ENST00000250003.3:c.404G>T	p.Cys135Phe	p.C135F	ENST00000250003	NM_002478.4	135	tGc/tTc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609622	81609622	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	241	625	2	ENST00000298171.2:c.1220C>A	p.Pro407Gln	p.P407Q	ENST00000298171	NM_000369.2	407	cCg/cAg																																																																															
IDH2	3418	MSKCC	GRCh37	15	90634877	90634877	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	311	551	1	ENST00000330062.3:c.116-1G>A		p.X39_splice	ENST00000330062	NM_002168.2	39																																																																																
MAP2K4	6416	MSKCC	GRCh37	17	11924238	11924238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	75	71	0	ENST00000353533.5:c.35C>T	p.Ser12Phe	p.S12F	ENST00000353533	NM_003010.3	12	tCc/tTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144161	11144161	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	472	758	0	ENST00000344626.4:c.3742C>T	p.Gln1248Ter	p.Q1248*	ENST00000344626	NM_003072.3	1248	Cag/Tag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659994	227659995	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	A			P-0020406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	229	646	1	ENST00000305123.5:c.3460_3461delinsT	p.Gly1154TrpfsTer27	p.G1154Wfs*27	ENST00000305123	NM_005544.2	1154	GGg/Tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0020408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	110	930	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
AXL	558	MSKCC	GRCh37	19	41762445	41762445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	85	844	1	ENST00000301178.4:c.2125G>A	p.Ala709Thr	p.A709T	ENST00000301178	NM_021913.4	709	Gcc/Acc																																																																															
ALK	238	MSKCC	GRCh37	2	29443631	29443631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	118	1071	0	ENST00000389048.3:c.3586C>A	p.Leu1196Met	p.L1196M	ENST00000389048	NM_004304.4	1196	Ctg/Atg																																																																															
ALK	238	MSKCC	GRCh37	2	29443610	29443610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	115	1010	2	ENST00000389048.3:c.3607G>A	p.Asp1203Asn	p.D1203N	ENST00000389048	NM_004304.4	1203	Gac/Aac																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211473	98211473	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	61	751	0	ENST00000331920.6:c.3682C>A	p.Gln1228Lys	p.Q1228K	ENST00000331920	NM_000264.3	1228	Cag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0020413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	55	662	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47079266	47079266	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0020413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	54	544	1	ENST00000409792.3:c.7240C>T	p.Gln2414Ter	p.Q2414*	ENST00000409792	NM_014159.6	2414	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0020418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	56	403	1	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0020418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	41	259	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108236173	108236173	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	245	732	0	ENST00000278616.4:c.9109C>T	p.Gln3037Ter	p.Q3037*	ENST00000278616	NM_000051.3	3037	Cag/Tag																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31387093	31387093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	158	784	0	ENST00000328111.2:c.1718G>T	p.Arg573Leu	p.R573L	ENST00000328111	NM_006892.3	573	cGg/cTg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31508783	31508783	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	322	781	1	ENST00000344624.3:c.1532A>G	p.Lys511Arg	p.K511R	ENST00000344624		511	aAa/aGa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589012	67589116	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATACTCTTACACTAAGGTAAGCCAGGGAATATAGCTGAAATTAGGGTTTTGGGCTGATATTAAAACATATTTCCTTATTCCAAAATGTTAATACCTTTATTTTTA	ATACTCTTACACTAAGGTAAGCCAGGGAATATAGCTGAAATTAGGGTTTTGGGCTGATATTAAAACATATTTCCTTATTCCAAAATGTTAATACCTTTATTTTTA	-			P-0020418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	55	331	2	ENST00000274335.5:c.1103_1119-15del		p.X368_splice	ENST00000274335		368																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67589171	67589171	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	20	375	0	ENST00000274335.5:c.1159G>C	p.Asp387His	p.D387H	ENST00000274335		387	Gat/Cat																																																																															
MDM4	4194	MSKCC	GRCh37	1	204495487	204495487	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0020438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	252	493	1	ENST00000367182.3:c.79-1G>T		p.X27_splice	ENST00000367182	NM_001278516.1	27																																																																																
PIK3C3	5289	MSKCC	GRCh37	18	39637979	39637979	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	449	765	1	ENST00000262039.4:c.2396G>T	p.Arg799Leu	p.R799L	ENST00000262039	NM_002647.2	799	cGt/cTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1219357	1219357	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	466	1005	0	ENST00000326873.7:c.409C>T	p.Gln137Ter	p.Q137*	ENST00000326873	NM_000455.4	137	Cag/Tag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098806	178098806	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	736	862	2	ENST00000397062.3:c.239C>A	p.Thr80Lys	p.T80K	ENST00000397062	NM_006164.4	80	aCa/aAa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800541	32800541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	481	979	2	ENST00000374899.4:c.1006G>A	p.Val336Ile	p.V336I	ENST00000374899	NM_018833.2	336	Gtt/Att																																																																															
XIAP	331	MSKCC	GRCh37	X	123020336	123020337	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0020438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	206	645	2	ENST00000355640.3:c.824_825delinsTT	p.Trp275Phe	p.W275F	ENST00000355640		275	tGG/tTT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	113	480	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CBL	867	MSKCC	GRCh37	11	119146825	119146825	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	63	449	0	ENST00000264033.4:c.988G>T	p.Asp330Tyr	p.D330Y	ENST00000264033	NM_005188.3	330	Gat/Tat																																																																															
STK11	6794	MSKCC	GRCh37	19	1207203	1207204	+	splice_donor_variant	Splice_Site	DEL	GT	GT	-			P-0025976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	95	688	0	ENST00000326873.7:c.290+1_290+2del		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																																
APC	324	MSKCC	GRCh37	5	112151270	112151270	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	48	361	0	ENST00000257430.4:c.913del	p.Thr305GlnfsTer31	p.T305Qfs*31	ENST00000257430	NM_000038.5	305	Aca/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0025980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	134	575	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
AR	367	MSKCC	GRCh37	X	66765173	66765173	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	12	163	1	ENST00000374690.3:c.185A>T	p.Gln62Leu	p.Q62L	ENST00000374690	NM_000044.3	62	cAg/cTg																																																																															
AR	367	MSKCC	GRCh37	X	66863125	66863125	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs139524801		P-0025980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	55	534	1	ENST00000374690.3:c.1644G>T	p.Leu548Phe	p.L548F	ENST00000374690	NM_000044.3	548	ttG/ttT																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3801794	3801794	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	64	547	1	ENST00000262367.5:c.3712G>T	p.Glu1238Ter	p.E1238*	ENST00000262367	NM_004380.2	1238	Gag/Tag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858470	9858470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	56	515	0	ENST00000330684.3:c.2931C>A	p.Asn977Lys	p.N977K	ENST00000330684	NM_001134407.1	977	aaC/aaA																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0025982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	179	440	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574030	7574030	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	162	519	1	ENST00000269305.4:c.997del	p.Arg333ValfsTer12	p.R333Vfs*12	ENST00000269305	NM_001126112.2	333	Cgt/gt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591108	67591119	+	inframe_deletion	In_Frame_Del	DEL	ACCAGACCTTAT	ACCAGACCTTAT	-			P-0025982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	58	363	0	ENST00000274335.5:c.1701_1712del	p.Lys567_Ile571delinsAsn	p.K567_I571delinsN	ENST00000274335		567	aaACCAGACCTTATc/aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	119	768	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55210075	55210075	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	107	720	0	ENST00000275493.2:c.185T>G	p.Leu62Arg	p.L62R	ENST00000275493	NM_005228.3	62	cTt/cGt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420202	88420202	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	45	660	1	ENST00000360948.2:c.2484del	p.Lys829ArgfsTer18	p.K829Rfs*18	ENST00000360948	NM_001012338.2	828	ggG/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	167	1138	2	ENST00000269305.4:c.400T>A	p.Phe134Ile	p.F134I	ENST00000269305	NM_001126112.2	134	Ttt/Att																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561532	9561532	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	92	592	0	ENST00000353224.5:c.250G>T	p.Gly84Cys	p.G84C	ENST00000353224	NM_177990.2	84	Ggc/Tgc																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813385	102813385	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	141	559	0	ENST00000307046.8:c.304C>G	p.Leu102Val	p.L102V	ENST00000307046	NM_001111285.1	102	Cta/Gta																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63545660	63545661	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	92	591	0	ENST00000307078.5:c.933_934delinsAT	p.Met312Leu	p.M312L	ENST00000307078	NM_004655.3	311	tcCAtg/tcATtg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267538	198267538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	44	466	0	ENST00000335508.6:c.1819G>T	p.Ala607Ser	p.A607S	ENST00000335508	NM_012433.2	607	Gct/Tct																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212615426	212615426	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	105	682	0	ENST00000342788.4:c.560G>T	p.Gly187Val	p.G187V	ENST00000342788	NM_005235.2	187	gGa/gTa																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138375069	138375069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	131	814	1	ENST00000289153.2:c.2990G>T	p.Gly997Val	p.G997V	ENST00000289153	NM_006219.2	997	gGg/gTg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143191848	143191848	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	101	573	0	ENST00000262992.4:c.583G>T	p.Asp195Tyr	p.D195Y	ENST00000262992	NM_001101669.1	195	Gac/Tac																																																																															
MSH3	4437	MSKCC	GRCh37	5	79952317	79952317	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	113	772	0	ENST00000265081.6:c.325G>T	p.Gly109Ter	p.G109*	ENST00000265081	NM_002439.4	109	Gga/Tga																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564302	86564302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	97	416	0	ENST00000274376.6:c.34G>T	p.Gly12Cys	p.G12C	ENST00000274376	NM_002890.2	12	Ggc/Tgc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004482	150004482	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	127	721	0	ENST00000253339.5:c.1743A>C	p.Lys581Asn	p.K581N	ENST00000253339		581	aaA/aaC																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039309	47039309	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1119	180	1025	0	ENST00000329236.7:c.701G>T	p.Ser234Ile	p.S234I	ENST00000329236	NM_001204466.1	234	aGc/aTc																																																																															
MED12	9968	MSKCC	GRCh37	X	70345512	70345512	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	101	718	1	ENST00000374080.3:c.2372-1G>T		p.X791_splice	ENST00000374080		791																																																																																
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0025986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	378	668	1	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0025986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	107	677	1	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0025986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	299	477	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0025986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	189	399	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032541	12032541	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267604739		P-0025986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	261	428	0	ENST00000353533.5:c.977C>T	p.Pro326Leu	p.P326L	ENST00000353533	NM_003010.3	326	cCg/cTg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497272	149497272	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201061735		P-0025986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	409	677	0	ENST00000261799.4:c.3046G>A	p.Glu1016Lys	p.E1016K	ENST00000261799	NM_002609.3	1016	Gag/Aag																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128432131	128432132	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	101	588	0	ENST00000265960.3:c.314dup	p.Asn105LysfsTer10	p.N105Kfs*10	ENST00000265960	NM_001006617.1	105	aat/aaAt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244997	46244997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	461	674	0	ENST00000334344.6:c.3091C>T	p.Gln1031Ter	p.Q1031*	ENST00000334344	NM_152641.2	1031	Cag/Tag																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430441	181430441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	470	922	2	ENST00000325404.1:c.293G>A	p.Arg98Gln	p.R98Q	ENST00000325404	NM_003106.3	98	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	559	779	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18439825	18439825	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	132	579	0	ENST00000266497.5:c.723C>A	p.Ser241Arg	p.S241R	ENST00000266497		241	agC/agA																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112292	115112292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	46	175	0	ENST00000257566.3:c.1448C>T	p.Thr483Met	p.T483M	ENST00000257566	NM_016569.3	483	aCg/aTg																																																																															
MET	4233	MSKCC	GRCh37	7	116417463	116417463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	260	395	0	ENST00000397752.3:c.3280C>T	p.His1094Tyr	p.H1094Y	ENST00000397752	NM_000245.2	1094	Cat/Tat																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390964	89390964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	83	499	0	ENST00000336596.2:c.1030G>A	p.Asp344Asn	p.D344N	ENST00000336596	NM_005233.5	344	Gac/Aac																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463578	25463578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	98	692	2	ENST00000264709.3:c.2104G>A	p.Asp702Asn	p.D702N	ENST00000264709	NM_175629.2	702	Gat/Aat																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075157	16075157	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	75	391	0	ENST00000268712.3:c.395C>G	p.Pro132Arg	p.P132R	ENST00000268712	NM_006311.3	132	cCg/cGg																																																																															
FH	2271	MSKCC	GRCh37	1	241663871	241663871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	101	571	0	ENST00000366560.3:c.1256C>T	p.Ser419Leu	p.S419L	ENST00000366560	NM_000143.3	419	tCa/tTa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873005	134873005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	454	580	0	ENST00000398015.3:c.1309G>T	p.Val437Phe	p.V437F	ENST00000398015	NM_004441.4	437	Gtt/Ttt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259757	16259757	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	206	616	0	ENST00000375759.3:c.7022A>T	p.Lys2341Met	p.K2341M	ENST00000375759	NM_015001.2	2341	aAg/aTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462852	120462852	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	59	232	0	ENST00000256646.2:c.5479G>C	p.Asp1827His	p.D1827H	ENST00000256646	NM_024408.3	1827	Gat/Cat																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843669	156843669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	286	1070	0	ENST00000524377.1:c.1095C>A	p.Asn365Lys	p.N365K	ENST00000524377	NM_002529.3	365	aaC/aaA																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246493815	246493815	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	80	508	0	ENST00000388985.4:c.361G>C	p.Glu121Gln	p.E121Q	ENST00000388985		121	Gag/Cag																																																																															
TET1	80312	MSKCC	GRCh37	10	70405082	70405082	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	43	738	0	ENST00000373644.4:c.2596G>C	p.Glu866Gln	p.E866Q	ENST00000373644	NM_030625.2	866	Gaa/Caa																																																																															
CCND1	595	MSKCC	GRCh37	11	69458693	69458693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	206	673	1	ENST00000227507.2:c.508G>A	p.Glu170Lys	p.E170K	ENST00000227507	NM_053056.2	170	Gag/Aag																																																																															
ATM	472	MSKCC	GRCh37	11	108121627	108121627	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	201	589	0	ENST00000278616.4:c.1435G>C	p.Asp479His	p.D479H	ENST00000278616	NM_000051.3	479	Gat/Cat																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112919996	112919996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	174	1107	1	ENST00000351677.2:c.1211C>T	p.Ser404Leu	p.S404L	ENST00000351677	NM_002834.3	404	tCa/tTa																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281550	49281550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	111	784	2	ENST00000282018.3:c.597G>T	p.Gln199His	p.Q199H	ENST00000282018	NM_020377.2	199	caG/caT																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987024	36987024	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	414	644	1	ENST00000354822.5:c.665A>T	p.Glu222Val	p.E222V	ENST00000354822	NM_001079668.2	222	gAg/gTg																																																																															
MGA	23269	MSKCC	GRCh37	15	41991354	41991354	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	61	571	0	ENST00000219905.7:c.2185G>C	p.Glu729Gln	p.E729Q	ENST00000219905	NM_001164273.1	729	Gaa/Caa																																																																															
MGA	23269	MSKCC	GRCh37	15	42042295	42042295	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	206	681	1	ENST00000219905.7:c.6490G>T	p.Gly2164Ter	p.G2164*	ENST00000219905	NM_001164273.1	2164	Gga/Tga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680771	88680771	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	123	731	0	ENST00000360948.2:c.486C>G	p.Phe162Leu	p.F162L	ENST00000360948	NM_001012338.2	162	ttC/ttG																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783894	50783894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	104	880	1	ENST00000398568.2:c.285G>T	p.Lys95Asn	p.K95N	ENST00000398568	NM_001042412.1	95	aaG/aaT																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627691	37627691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	624	866	1	ENST00000447079.4:c.1606C>T	p.Pro536Ser	p.P536S	ENST00000447079	NM_015083.1	536	Cca/Tca																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870589	40870589	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1285	121	789	0	ENST00000428826.2:c.814C>G	p.Gln272Glu	p.Q272E	ENST00000428826		272	Cag/Gag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554272	63554272	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	134	669	1	ENST00000307078.5:c.467A>G	p.Tyr156Cys	p.Y156C	ENST00000307078	NM_004655.3	156	tAc/tGc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212159	5212159	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	163	979	0	ENST00000357368.4:c.4872G>C	p.Met1624Ile	p.M1624I	ENST00000357368	NM_002850.3	1624	atG/atC																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276694	15276711	+	inframe_deletion	In_Frame_Del	DEL	CCGCTTGGCTGCATCAGC	CCGCTTGGCTGCATCAGC	-			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	655	854	1	ENST00000263388.2:c.5554_5571del	p.Ala1852_Arg1857del	p.A1852_R1857del	ENST00000263388	NM_000435.2	1852	GCTGATGCAGCCAAGCGG/-																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18272088	18272088	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	27	76	0	ENST00000222254.8:c.599-1G>A		p.X200_splice	ENST00000222254	NM_005027.3	200																																																																																
CCNE1	898	MSKCC	GRCh37	19	30313196	30313196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	454	709	0	ENST00000262643.3:c.890G>A	p.Gly297Asp	p.G297D	ENST00000262643	NM_001238.2	297	gGt/gAt																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47606986	47606986	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	86	608	0	ENST00000263735.4:c.736C>G	p.Gln246Glu	p.Q246E	ENST00000263735	NM_002354.2	246	Caa/Gaa																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919823	96919823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	94	494	1	ENST00000258439.3:c.440C>T	p.Ser147Phe	p.S147F	ENST00000258439	NM_001193304.2	147	tCt/tTt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225378288	225378288	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	150	428	0	ENST00000264414.4:c.607G>T	p.Glu203Ter	p.E203*	ENST00000264414	NM_003590.4	203	Gaa/Taa																																																																															
CUL3	8452	MSKCC	GRCh37	2	225449679	225449679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	67	423	0	ENST00000264414.4:c.48G>T	p.Met16Ile	p.M16I	ENST00000264414	NM_003590.4	16	atG/atT																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023144	31023144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	143	787	0	ENST00000375687.4:c.2629G>A	p.Glu877Lys	p.E877K	ENST00000375687	NM_015338.5	877	Gaa/Aaa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730876	40730876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	152	750	0	ENST00000373198.4:c.3659G>T	p.Arg1220Leu	p.R1220L	ENST00000373198	NM_133170.3	1220	cGg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790171	40790171	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	170	434	1	ENST00000373198.4:c.2560C>A	p.Arg854Ser	p.R854S	ENST00000373198	NM_133170.3	854	Cgc/Agc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40828007	40828007	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	31	343	0	ENST00000373198.4:c.2421G>T	p.Lys807Asn	p.K807N	ENST00000373198	NM_133170.3	807	aaG/aaT																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62316925	62316925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	280	630	0	ENST00000508582.2:c.1313G>T	p.Gly438Val	p.G438V	ENST00000508582		438	gGg/gTg																																																																															
ERG	2078	MSKCC	GRCh37	21	39762958	39762958	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	76	595	0	ENST00000288319.7:c.878A>T	p.Tyr293Phe	p.Y293F	ENST00000288319	NM_182918.3	293	tAt/tTt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021740	71021740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	165	486	0	ENST00000318789.4:c.1618G>A	p.Glu540Lys	p.E540K	ENST00000318789	NM_032682.5	540	Gaa/Aaa																																																																															
KDR	3791	MSKCC	GRCh37	4	55946227	55946228	+	missense_variant	Missense_Mutation	DNP	CG	CG	TT			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	69	372	3	ENST00000263923.4:c.3951_3952delinsAA	p.Val1318Met	p.V1318M	ENST00000263923	NM_002253.2	1317	acCGtg/acAAtg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31421402	31421402	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	322	579	0	ENST00000344624.3:c.3502G>T	p.Asp1168Tyr	p.D1168Y	ENST00000344624		1168	Gat/Tat																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519478	176519478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1288	366	1086	1	ENST00000292408.4:c.884G>T	p.Gly295Val	p.G295V	ENST00000292408	NM_213647.1	295	gGa/gTa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523718	176523718	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	255	775	0	ENST00000292408.4:c.2129G>T	p.Arg710Leu	p.R710L	ENST00000292408	NM_213647.1	710	cGa/cTa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048756	180048756	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	502	878	0	ENST00000261937.6:c.1806C>A	p.His602Gln	p.H602Q	ENST00000261937	NM_182925.4	602	caC/caA																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031889	26031889	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	40	270	0	ENST00000244661.2:c.400G>T	p.Glu134Ter	p.E134*	ENST00000244661	NM_003537.3	134	Gaa/Taa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032015	26032015	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	63	417	0	ENST00000244661.2:c.274G>T	p.Ala92Ser	p.A92S	ENST00000244661	NM_003537.3	92	Gcg/Tcg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324214	31324214	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	97	652	0	ENST00000412585.2:c.349C>G	p.His117Asp	p.H117D	ENST00000412585	NM_005514.6	117	Cac/Gac																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94068121	94068121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	102	330	0	ENST00000369303.4:c.841C>G	p.Arg281Gly	p.R281G	ENST00000369303	NM_004440.3	281	Cgt/Ggt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162622234	162622234	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	147	516	0	ENST00000366898.1:c.463C>G	p.Gln155Glu	p.Q155E	ENST00000366898	NM_004562.2	155	Caa/Gaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55272995	55272995	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	224	711	0	ENST00000275493.2:c.3318G>T	p.Gln1106His	p.Q1106H	ENST00000275493	NM_005228.3	1106	caG/caT																																																																															
CDK6	1021	MSKCC	GRCh37	7	92404147	92404147	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	161	354	0	ENST00000265734.4:c.234-2del		p.X78_splice	ENST00000265734	NM_001259.6	78																																																																																
MET	4233	MSKCC	GRCh37	7	116340196	116340196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	50	327	0	ENST00000397752.3:c.1058C>T	p.Ser353Phe	p.S353F	ENST00000397752	NM_000245.2	353	tCt/tTt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141549478	141549478	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	64	437	0	ENST00000220592.5:c.2110T>G	p.Phe704Val	p.F704V	ENST00000220592	NM_012154.3	704	Ttc/Gtc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949138	44949138	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	99	600	0	ENST00000377967.4:c.3699G>T	p.Trp1233Cys	p.W1233C	ENST00000377967	NM_021140.2	1233	tgG/tgT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412464	63412464	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	170	965	0	ENST00000330258.3:c.703C>A	p.Pro235Thr	p.P235T	ENST00000330258	NM_152424.3	235	Cct/Act																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413055	63413055	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	295	1015	0	ENST00000330258.3:c.112G>T	p.Glu38Ter	p.E38*	ENST00000330258	NM_152424.3	38	Gaa/Taa																																																																															
ATRX	546	MSKCC	GRCh37	X	76938572	76938572	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	113	589	0	ENST00000373344.5:c.2176G>T	p.Asp726Tyr	p.D726Y	ENST00000373344	NM_000489.3	726	Gat/Tat																																																																															
BTK	695	MSKCC	GRCh37	X	100615634	100615634	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	151	707	0	ENST00000308731.7:c.698T>A	p.Leu233Gln	p.L233Q	ENST00000308731	NM_000061.2	233	cTa/cAa																																																																															
XIAP	331	MSKCC	GRCh37	X	123025112	123025112	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	TT			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	82	805	0	ENST00000355640.3:c.1002delinsTT	p.Lys334AsnfsTer16	p.K334Nfs*16	ENST00000355640		334	aaG/aaTT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	230	539	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121856	2121856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	599	681	4	ENST00000219476.3:c.2018C>T	p.Ala673Val	p.A673V	ENST00000219476	NM_000548.3	673	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577128	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAAGCTGTT			P-0026054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	379	785	0	ENST00000269305.4:c.802_810dup	p.Asn268_Phe270dup	p.N268_F270dup	ENST00000269305	NM_001126112.2	268	-/AACAGCTTT																																																																															
ALK	238	MSKCC	GRCh37	2	30143333	30143333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	370	906	0	ENST00000389048.3:c.193C>T	p.Arg65Cys	p.R65C	ENST00000389048	NM_004304.4	65	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0026054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	180	473	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0026054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	232	403	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907098	101907098	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	245	473	2	ENST00000374994.4:c.1058G>T	p.Gly353Val	p.G353V	ENST00000374994	NM_004612.2	353	gGa/gTa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	551	920	0	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579182	7579319	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAACTATAAAAAAACACTGACAGGAAGCCAAAGGGTGAAGAGGAATCCCAAAGTTCCAAACAAAAGAAATGCAGGGGGATACGGCCAGGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAG	AAACTATAAAAAAACACTGACAGGAAGCCAAAGGGTGAAGAGGAATCCCAAAGTTCCAAACAAAAGAAATGCAGGGGGATACGGCCAGGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAG	-			P-0025851-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			7	185	68	0	ENST00000269305.4:c.368_375+130del		p.X123_splice	ENST00000269305	NM_001126112.2	123																																																																																
EED	8726	MSKCC	GRCh37	11	85975282	85975282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025851-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			507	148	373	1	ENST00000263360.6:c.703C>T	p.His235Tyr	p.H235Y	ENST00000263360	NM_003797.3	235	Cac/Tac																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133300	38133300	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025851-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	186	507	0	ENST00000317025.8:c.4173G>C	p.Lys1391Asn	p.K1391N	ENST00000317025	NM_023034.1	1391	aaG/aaC																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692956	89692971	+	frameshift_variant	Frame_Shift_Del	DEL	AGGCACAAGAGGCCCT	AGGCACAAGAGGCCCT	-			P-0025991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	20	534	2	ENST00000371953.3:c.442_457del	p.Ala148IlefsTer6	p.A148Ifs*6	ENST00000371953	NM_000314.4	147	aAGGCACAAGAGGCCCTa/aa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344077	118344087	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAGGAAAAG	AAAAGGAAAAG	-			P-0025991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	26	382	0	ENST00000534358.1:c.2208_2218del	p.Arg736SerfsTer3	p.R736Sfs*3	ENST00000534358	NM_005933.3	735	AAAAGGAAAAGa/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0025994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	417	704	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9786991	9786991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	285	593	2	ENST00000377346.4:c.3022G>A	p.Glu1008Lys	p.E1008K	ENST00000377346	NM_005026.3	1008	Gag/Aag																																																																															
POLE	5426	MSKCC	GRCh37	12	133254193	133254193	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146592584		P-0025994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	307	558	1	ENST00000320574.5:c.691C>T	p.Arg231Cys	p.R231C	ENST00000320574	NM_006231.2	231	Cgc/Tgc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417858	138417858	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	323	611	0	ENST00000289153.2:c.1661A>G	p.Glu554Gly	p.E554G	ENST00000289153	NM_006219.2	554	gAa/gGa																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182683404	182683404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	258	483	0	ENST00000292782.4:c.141T>A	p.Asn47Lys	p.N47K	ENST00000292782	NM_020640.2	47	aaT/aaA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230818	66230818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	184	421	2	ENST00000273854.3:c.2153G>A	p.Arg718His	p.R718H	ENST00000273854	NM_004439.5	718	cGc/cAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0025996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	439	592	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177450	56177450	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	128	401	0	ENST00000399503.3:c.2425del	p.His809ThrfsTer13	p.H809Tfs*13	ENST00000399503	NM_005921.1	808	tCc/tc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879794	37879794	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	247	419	0	ENST00000269571.5:c.2089G>T	p.Val697Leu	p.V697L	ENST00000269571		697	Gtg/Ttg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171704	36171704	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	134	459	0	ENST00000300305.3:c.861C>A	p.Tyr287Ter	p.Y287*	ENST00000300305		287	taC/taA																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177555	56177555	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	136	361	0	ENST00000399503.3:c.2530del	p.Ser844ProfsTer13	p.S844Pfs*13	ENST00000399503	NM_005921.1	843	gTt/gt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552891	106552891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	125	819	0	ENST00000369096.4:c.856C>T	p.Arg286Cys	p.R286C	ENST00000369096	NM_001198.3	286	Cgt/Tgt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65303621	65303621	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	43	516	0	ENST00000342505.4:c.3134T>G	p.Val1045Gly	p.V1045G	ENST00000342505	NM_002227.2	1045	gTg/gGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	260	524	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175600	112175600	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	156	365	0	ENST00000257430.4:c.4312delA	p.Thr1438HisfsTer35	p.T1438Hfs*35	ENST00000257430	NM_000038.5	1437	Aaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0026011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	412	742	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0026011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	267	533	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0026011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	107	554	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151843748	151843748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	127	456	0	ENST00000262189.6:c.13967C>T	p.Ala4656Val	p.A4656V	ENST00000262189	NM_170606.2	4656	gCg/gTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260375	16260375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	241	504	0	ENST00000375759.3:c.7640C>T	p.Thr2547Ile	p.T2547I	ENST00000375759	NM_015001.2	2547	aCa/aTa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114799801	114799801	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	171	480	0	ENST00000543371.1:c.468G>A	p.Trp156Ter	p.W156*	ENST00000543371	NM_001198531.1	156	tgG/tgA																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857958	9857958	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140536516		P-0026011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	277	618	2	ENST00000330684.3:c.3443C>T	p.Pro1148Leu	p.P1148L	ENST00000330684	NM_001134407.1	1148	cCg/cTg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967216	93967216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	89	516	0	ENST00000369303.4:c.2136G>T	p.Glu712Asp	p.E712D	ENST00000369303	NM_004440.3	712	gaG/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7579415	7579415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	502	583	1	ENST00000269305.4:c.272G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tGg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0026013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	76	400	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0026013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	226	264	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821541	72821541	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	201	324	0	ENST00000268489.5:c.10634G>C	p.Ser3545Thr	p.S3545T	ENST00000268489	NM_006885.3	3545	aGt/aCt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395654	45395667	+	frameshift_variant	Frame_Shift_Del	DEL	TACTTCATCCTTTT	TACTTCATCCTTTT	-			P-0026013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	220	392	1	ENST00000262160.6:c.467_480del	p.Lys156MetfsTer11	p.K156Mfs*11	ENST00000262160	NM_005901.5	156	aAAAAGGATGAAGTA/a																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266939	18266980	+	inframe_deletion	In_Frame_Del	DEL	GCCCGGCCCGGCCCTCGCCCACGGGGCCCCCGCCCACTGCCC	GCCCGGCCCGGCCCTCGCCCACGGGGCCCCCGCCCACTGCCC	-			P-0026013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	225	242	0	ENST00000222254.8:c.253_294del	p.Gly87_Pro100del	p.G87_P100del	ENST00000222254	NM_005027.3	84	GCCCGGCCCGGCCCTCGCCCACGGGGCCCCCGCCCACTGCCC/-																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	42	535	0	ENST00000371085.3:c.601C>A	p.Arg201Ser	p.R201S	ENST00000371085	NM_000516.4	201	Cgt/Agt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430786	181430786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	43	1278	1	ENST00000325404.1:c.638C>T	p.Ser213Leu	p.S213L	ENST00000325404	NM_003106.3	213	tCg/tTg																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872913	35872913	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	39	587	0	ENST00000216797.5:c.319C>T	p.Gln107Ter	p.Q107*	ENST00000216797	NM_020529.2	107	Cag/Tag																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250670	26250670	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	43	545	0	ENST00000446824.2:c.164A>G	p.Tyr55Cys	p.Y55C	ENST00000446824	NM_021018.2	55	tAt/tGt																																																																															
MED12	9968	MSKCC	GRCh37	X	70349261	70349261	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	37	372	0	ENST00000374080.3:c.3673A>C	p.Lys1225Gln	p.K1225Q	ENST00000374080		1225	Aag/Cag																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557673	21557673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	95	474	0	ENST00000382592.4:c.2172C>A	p.Asp724Glu	p.D724E	ENST00000382592	NM_014572.2	724	gaC/gaA																																																																															
MPL	4352	MSKCC	GRCh37	1	43805052	43805052	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs6088		P-0025904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	56	429	0	ENST00000372470.3:c.502G>A	p.Glu168Lys	p.E168K	ENST00000372470	NM_005373.2	168	Gaa/Aaa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974962	15974962	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	18	286	0	ENST00000268712.3:c.3913A>T	p.Thr1305Ser	p.T1305S	ENST00000268712	NM_006311.3	1305	Act/Tct																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210770	2210770	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	22	413	0	ENST00000398665.3:c.1267G>T	p.Glu423Ter	p.E423*	ENST00000398665	NM_032482.2	423	Gag/Tag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349350	89349350	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	222	778	0	ENST00000301030.4:c.3600A>T	p.Lys1200Asn	p.K1200N	ENST00000301030	NM_001256183.1	1200	aaA/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	196	584	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252941	36252943	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0025912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	63	418	0	ENST00000300305.3:c.419_421del	p.Tyr140del	p.Y140del	ENST00000300305		140	tACTcg/tcg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52696178	52696178	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	60	719	0	ENST00000394830.3:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000394830	NM_018313.4	167	Caa/Taa																																																																															
ATR	545	MSKCC	GRCh37	3	142186826	142186826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	47	499	0	ENST00000350721.4:c.6637G>A	p.Gly2213Arg	p.G2213R	ENST00000350721	NM_001184.3	2213	Gga/Aga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	74	424	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526639	106526639	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	158	454	0	ENST00000359195.3:c.2932A>T	p.Ile978Phe	p.I978F	ENST00000359195	NM_002649.2	978	Att/Ttt																																																																															
TEK	7010	MSKCC	GRCh37	9	27172718	27172718	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	124	553	0	ENST00000380036.4:c.733G>T	p.Gly245Trp	p.G245W	ENST00000380036	NM_000459.3	245	Ggg/Tgg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223540	53223541	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0025912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	47	330	0	ENST00000375401.3:c.3818_3819del	p.Pro1273ArgfsTer26	p.P1273Rfs*26	ENST00000375401	NM_004187.3	1273	cCC/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0026016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	415	581	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81973572	81973572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	156	617	0	ENST00000359376.3:c.3389C>T	p.Ala1130Val	p.A1130V	ENST00000359376	NM_002661.3	1130	gCa/gTa																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17742959	17742959	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	69	527	0	ENST00000250003.3:c.867C>A	p.Ser289Arg	p.S289R	ENST00000250003	NM_002478.4	289	agC/agA																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861939	57861939	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	58	516	1	ENST00000228682.2:c.1240C>A	p.Pro414Thr	p.P414T	ENST00000228682	NM_005269.2	414	Ccc/Acc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28897069	28897069	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	40	398	0	ENST00000282397.4:c.2811C>A	p.His937Gln	p.H937Q	ENST00000282397	NM_002019.4	937	caC/caA																																																																															
FLT1	2321	MSKCC	GRCh37	13	28959028	28959028	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	45	355	0	ENST00000282397.4:c.2110G>T	p.Glu704Ter	p.E704*	ENST00000282397	NM_002019.4	704	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0026019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	74	622	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
BARD1	580	MSKCC	GRCh37	2	215632376	215632376	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0026019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	62	284	0	ENST00000260947.4:c.1398T>G	p.His466Gln	p.H466Q	ENST00000260947	NM_000465.2	466	caT/caG																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0026019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	523	707	0	ENST00000397752.3:c.3028+1G>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0026020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	113	478	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604785	48604785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	106	425	0	ENST00000342988.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000342988	NM_005359.5	536	cTa/cCa																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683357	88683357	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	192	686	0	ENST00000372037.3:c.1480C>T	p.Arg494Ter	p.R494*	ENST00000372037	NM_004329.2	494	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27022914	27022945	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCGCCGCCAGCAGCCTGGGCAACCCGCCG	CCGCCGCCGCCAGCAGCCTGGGCAACCCGCCG	-			P-0026020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	20	95	0	ENST00000324856.7:c.31_62del	p.Ser11LeufsTer89	p.S11Lfs*89	ENST00000324856	NM_006015.4	7	cCCGCCGCCGCCAGCAGCCTGGGCAACCCGCCG/c																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88659620	88659620	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	139	521	1	ENST00000372037.3:c.403C>T	p.Gln135Ter	p.Q135*	ENST00000372037	NM_004329.2	135	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	164	665	0	ENST00000269305.4:c.215_216insG	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	ccc/ccGc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59853788	59853788	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	250	511	0	ENST00000259008.2:c.2071A>G	p.Ile691Val	p.I691V	ENST00000259008	NM_032043.2	691	Att/Gtt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864434	162864434	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0026020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	136	582	1	ENST00000366898.1:c.79A>T	p.Lys27Ter	p.K27*	ENST00000366898	NM_004562.2	27	Aag/Tag																																																																															
SMO	6608	MSKCC	GRCh37	7	128829040	128829042	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0026026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	12	65	1	ENST00000249373.3:c.67_69delCTG	p.Leu23del	p.L23del	ENST00000249373	NM_005631.4	16	ggGCTg/ggg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115849	8115850	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	123	628	0	ENST00000346208.3:c.1196dup	p.His399GlnfsTer108	p.H399Qfs*108	ENST00000346208		399	cac/cAac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540336	187540336	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	202	523	0	ENST00000441802.2:c.7404del	p.Asp2469MetfsTer12	p.D2469Mfs*12	ENST00000441802	NM_005245.3	2468	tcT/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	364	508	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045157	47045157	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	63	372	0	ENST00000329236.7:c.2164G>T	p.Glu722Ter	p.E722*	ENST00000329236	NM_001204466.1	722	Gag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106528	27106528	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	47	712	1	ENST00000324856.7:c.6139G>T	p.Glu2047Ter	p.E2047*	ENST00000324856	NM_006015.4	2047	Gag/Tag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745539	162745539	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	65	491	1	ENST00000367921.3:c.1954A>G	p.Met652Val	p.M652V	ENST00000367921	NM_006182.2	652	Atg/Gtg																																																																															
ATM	472	MSKCC	GRCh37	11	108199901	108199901	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	25	270	0	ENST00000278616.4:c.7243G>C	p.Ala2415Pro	p.A2415P	ENST00000278616	NM_000051.3	2415	Gct/Cct																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344074	118344074	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	51	321	0	ENST00000534358.1:c.2200A>G	p.Arg734Gly	p.R734G	ENST00000534358	NM_005933.3	734	Aga/Gga																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416706	121416706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	55	651	0	ENST00000257555.6:c.135C>A	p.Asp45Glu	p.D45E	ENST00000257555		45	gaC/gaA																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562891	21562891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	65	686	0	ENST00000382592.4:c.1028C>T	p.Pro343Leu	p.P343L	ENST00000382592	NM_014572.2	343	cCc/cTc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066913	30066913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	39	490	2	ENST00000331968.5:c.2218C>T	p.Arg740Trp	p.R740W	ENST00000331968	NM_002742.2	740	Cgg/Tgg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89869669	89869669	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	58	563	0	ENST00000389301.3:c.790C>A	p.Gln264Lys	p.Q264K	ENST00000389301	NM_000135.2	264	Cag/Aag																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278074	18278074	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1131691683		P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	83	673	0	ENST00000222254.8:c.1694C>G	p.Pro565Arg	p.P565R	ENST00000222254	NM_005027.3	565	cCg/cGg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867028	45867028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	51	472	1	ENST00000391945.4:c.1091G>T	p.Arg364Leu	p.R364L	ENST00000391945	NM_000400.3	364	cGc/cTc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024236	31024236	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	54	472	0	ENST00000375687.4:c.3721G>T	p.Glu1241Ter	p.E1241*	ENST00000375687	NM_015338.5	1241	Gaa/Taa																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64288920	64288920	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	52	509	0	ENST00000370651.3:c.316G>T	p.Ala106Ser	p.A106S	ENST00000370651	NM_003463.4	106	Gca/Tca																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521935	157521935	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	38	497	0	ENST00000346085.5:c.4207A>G	p.Met1403Val	p.M1403V	ENST00000346085	NM_020732.3	1403	Atg/Gtg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522200	157522201	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	64	471	0	ENST00000346085.5:c.4472_4473insT	p.Gly1492ArgfsTer18	p.G1492Rfs*18	ENST00000346085	NM_020732.3	1491	cca/ccTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106607	27106607	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	CCAACTGCCCC			P-0025832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	132	417	0	ENST00000324856.7:c.6218delinsCCAACTGCCCC	p.Leu2073ProfsTer29	p.L2073Pfs*29	ENST00000324856	NM_006015.4	2073	cTa/cCCAACTGCCCCa																																																																															
ATM	472	MSKCC	GRCh37	11	108141986	108141986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	190	389	1	ENST00000278616.4:c.2930G>A	p.Cys977Tyr	p.C977Y	ENST00000278616	NM_000051.3	977	tGt/tAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	447	520	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RB1	5925	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587776783		P-0025832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	170	318	0	ENST00000267163.4:c.1215+1G>A		p.X405_splice	ENST00000267163	NM_000321.2	405																																																																																
SOX9	6662	MSKCC	GRCh37	17	70117858	70117858	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	146	322	1	ENST00000245479.2:c.326T>C	p.Met109Thr	p.M109T	ENST00000245479	NM_000346.3	109	aTg/aCg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119717	70119717	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	280	495	0	ENST00000245479.2:c.723del	p.Thr243ProfsTer10	p.T243Pfs*10	ENST00000245479	NM_000346.3	240	aCc/ac																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	165	310	1	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt																																																																															
CARM1	10498	MSKCC	GRCh37	19	11027413	11027413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	278	507	4	ENST00000327064.4:c.980G>A	p.Arg327Gln	p.R327Q	ENST00000327064	NM_199141.1	327	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112173393	112173394	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	156	313	2	ENST00000257430.4:c.2107dup	p.Ala703GlyfsTer3	p.A703Gfs*3	ENST00000257430	NM_000038.5	701	atg/atGg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0025832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	82	265	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552891	106552891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	296	694	2	ENST00000369096.4:c.856C>T	p.Arg286Cys	p.R286C	ENST00000369096	NM_001198.3	286	Cgt/Tgt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962849	2962849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	249	511	1	ENST00000396946.4:c.2059G>A	p.Ala687Thr	p.A687T	ENST00000396946	NM_032415.4	687	Gcg/Acg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0025833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	80	655	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266513	198266513	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	44	462	0	ENST00000335508.6:c.2323C>G	p.Arg775Gly	p.R775G	ENST00000335508	NM_012433.2	775	Cga/Gga																																																																															
UPF1	5976	MSKCC	GRCh37	19	18972906	18972906	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	132	741	0	ENST00000262803.5:c.2545G>T	p.Gly849Cys	p.G849C	ENST00000262803	NM_002911.3	849	Ggc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40738999	40738999	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	150	492	0	ENST00000373198.4:c.3285A>C	p.Glu1095Asp	p.E1095D	ENST00000373198	NM_133170.3	1095	gaA/gaC																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986497	36986497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	236	552	0	ENST00000354822.5:c.1192G>A	p.Gly398Ser	p.G398S	ENST00000354822	NM_001079668.2	398	Ggt/Agt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179460	56179468	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	ATCAGGCTC	ATCAGGCTC	-			P-0025834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	117	372	0	ENST00000399503.3:c.3774_3782del	p.Tyr1258_Gln1261delinsTer	p.Y1258_Q1261delins*	ENST00000399503	NM_005921.1	1258	tATCAGGCTCaa/taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0025838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	417	731	1	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9892194	9892194	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	238	580	0	ENST00000330684.3:c.2296C>T	p.Gln766Ter	p.Q766*	ENST00000330684	NM_001134407.1	766	Cag/Tag																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128044521	128044521	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0025838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	30	443	0	ENST00000285398.2:c.1100C>G	p.Ser367Ter	p.S367*	ENST00000285398	NM_000122.1	367	tCa/tGa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805728	32805728	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	260	521	0	ENST00000374899.4:c.283G>T	p.Ala95Ser	p.A95S	ENST00000374899	NM_018833.2	95	Gct/Tct																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932878	36932878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	68	583	1	ENST00000361632.4:c.1993C>T	p.Pro665Ser	p.P665S	ENST00000361632		665	Cca/Tca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0025841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	162	540	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0025841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	190	589	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678456	88678456	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	159	575	0	ENST00000360948.2:c.1080G>T	p.Glu360Asp	p.E360D	ENST00000360948	NM_001012338.2	360	gaG/gaT																																																																															
FANCA	2175	MSKCC	GRCh37	16	89849315	89849315	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	165	534	0	ENST00000389301.3:c.1578A>T	p.Glu526Asp	p.E526D	ENST00000389301	NM_000135.2	526	gaA/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057520005		P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	193	730	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130266	11130266	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	442	483	1	ENST00000344626.4:c.2506-1G>T		p.X836_splice	ENST00000344626	NM_003072.3	836																																																																																
SESN2	83667	MSKCC	GRCh37	1	28598204	28598204	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1304	96	763	0	ENST00000253063.3:c.176A>C	p.Glu59Ala	p.E59A	ENST00000253063	NM_031459.4	59	gAg/gCg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256439	115256439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	55	490	1	ENST00000369535.4:c.272C>A	p.Ala91Glu	p.A91E	ENST00000369535	NM_002524.4	91	gCg/gAg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176176047	176176047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1092	72	686	1	ENST00000367669.3:c.68C>T	p.Ser23Leu	p.S23L	ENST00000367669	NM_022457.5	23	tCg/tTg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610042	81610042	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	44	379	0	ENST00000298171.2:c.1640T>A	p.Val547Asp	p.V547D	ENST00000298171	NM_000369.2	547	gTt/gAt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121934	2121934	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1096	165	796	0	ENST00000219476.3:c.2096A>C	p.Gln699Pro	p.Q699P	ENST00000219476	NM_000548.3	699	cAg/cCg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30321581	30321581	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	55	322	0	ENST00000322652.5:c.1438-2A>T		p.X480_splice	ENST00000322652	NM_015355.2	480																																																																																
PIK3C3	5289	MSKCC	GRCh37	18	39613853	39613855	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	59	570	1	ENST00000262039.4:c.1771_1773del	p.Ile591del	p.I591del	ENST00000262039	NM_002647.2	591	ATC/-																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375029	45375029	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	38	434	1	ENST00000262160.6:c.814G>T	p.Ala272Ser	p.A272S	ENST00000262160	NM_005901.5	272	Gca/Tca																																																																															
REL	5966	MSKCC	GRCh37	2	61128201	61128201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	45	384	1	ENST00000295025.8:c.377G>T	p.Gly126Val	p.G126V	ENST00000295025	NM_002908.2	126	gGa/gTa																																																																															
MLH1	4292	MSKCC	GRCh37	3	37045897	37045897	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	58	541	0	ENST00000231790.2:c.312G>T	p.Leu104Phe	p.L104F	ENST00000231790	NM_000249.3	104	ttG/ttT																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259463	89259464	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	95	594	1	ENST00000336596.2:c.607_608delinsAA	p.Pro203Lys	p.P203K	ENST00000336596	NM_005233.5	203	CCa/AAa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968320	134968320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	223	617	1	ENST00000398015.3:c.2833C>A	p.Gln945Lys	p.Q945K	ENST00000398015	NM_004441.4	945	Cag/Aag																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665151	138665151	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	195	583	0	ENST00000330315.3:c.414C>A	p.Phe138Leu	p.F138L	ENST00000330315	NM_023067.3	138	ttC/ttA																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750485	41750485	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	78	675	1	ENST00000226382.2:c.143G>T	p.Arg48Met	p.R48M	ENST00000226382	NM_003924.3	48	aGg/aTg																																																																															
KIT	3815	MSKCC	GRCh37	4	55595594	55595594	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	56	381	0	ENST00000288135.5:c.2084A>T	p.Glu695Val	p.E695V	ENST00000288135	NM_000222.2	695	gAa/gTa																																																																															
TAP2	6891	MSKCC	GRCh37	6	32797297	32797298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	73	677	0	ENST00000374899.4:c.1811dup	p.Ser605LysfsTer28	p.S605Kfs*28	ENST00000374899	NM_018833.2	604	gga/ggGa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94068078	94068078	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	47	453	0	ENST00000369303.4:c.884G>C	p.Arg295Pro	p.R295P	ENST00000369303	NM_004440.3	295	cGt/cCt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117715782	117715782	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	42	411	0	ENST00000368508.3:c.976A>G	p.Thr326Ala	p.T326A	ENST00000368508	NM_002944.2	326	Aca/Gca																																																																															
ROS1	6098	MSKCC	GRCh37	6	117715902	117715902	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	57	369	0	ENST00000368508.3:c.857-1G>C		p.X286_splice	ENST00000368508	NM_002944.2	286																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106508079	106508079	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	40	192	0	ENST00000359195.3:c.73C>A	p.Pro25Thr	p.P25T	ENST00000359195	NM_002649.2	25	Ccg/Acg																																																																															
TEK	7010	MSKCC	GRCh37	9	27197397	27197397	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	71	809	0	ENST00000380036.4:c.1709C>A	p.Ser570Ter	p.S570*	ENST00000380036	NM_000459.3	570	tCg/tAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411873	63411873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1303	193	1021	1	ENST00000330258.3:c.1294G>A	p.Gly432Ser	p.G432S	ENST00000330258	NM_152424.3	432	Ggc/Agc																																																																															
ATRX	546	MSKCC	GRCh37	X	76763974	76763974	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	72	612	0	ENST00000373344.5:c.7334T>A	p.Ile2445Asn	p.I2445N	ENST00000373344	NM_000489.3	2445	aTc/aAc																																																																															
BTK	695	MSKCC	GRCh37	X	100615100	100615100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	137	629	2	ENST00000308731.7:c.815C>T	p.Ala272Val	p.A272V	ENST00000308731	NM_000061.2	272	gCa/gTa																																																																															
XIAP	331	MSKCC	GRCh37	X	123020177	123020177	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1228	70	762	0	ENST00000355640.3:c.665G>T	p.Arg222Leu	p.R222L	ENST00000355640		222	cGa/cTa																																																																															
STAG2	10735	MSKCC	GRCh37	X	123181342	123181342	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	63	407	0	ENST00000218089.9:c.806A>G	p.Gln269Arg	p.Q269R	ENST00000218089	NM_001042749.1	269	cAa/cGa																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858089	152858089	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	69	725	0	ENST00000406277.2:c.526T>A	p.Tyr176Asn	p.Y176N	ENST00000406277	NM_152274.4	176	Tac/Aac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0025867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	174	218	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572520	64572520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	347	438	0	ENST00000337652.1:c.1351C>T	p.Arg451Cys	p.R451C	ENST00000337652	NM_130803.2	451	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	133	542	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	84	301	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
AR	367	MSKCC	GRCh37	X	66766357	66766392	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	-			P-0025869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	75	38	0	ENST00000374690.3:c.1385_1420del	p.Gly462_Gly473del	p.G462_G473del	ENST00000374690	NM_000044.3	457	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7574035	7574035	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0025869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	208	590	0	ENST00000269305.4:c.994-2A>G		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
ELF3	1999	MSKCC	GRCh37	1	201983140	201983141	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0025869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	104	654	0	ENST00000359651.3:c.990_991dup	p.Arg331ProfsTer4	p.R331Pfs*4	ENST00000359651		330	agc/agCCc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989544	212989544	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	61	367	0	ENST00000342788.4:c.167G>T	p.Cys56Phe	p.C56F	ENST00000342788	NM_005235.2	56	tGt/tTt																																																																															
APC	324	MSKCC	GRCh37	5	112137078	112137078	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0025869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	62	449	0	ENST00000257430.4:c.832C>T	p.Gln278Ter	p.Q278*	ENST00000257430	NM_000038.5	278	Cag/Tag																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	77	461	0	ENST00000288602.6:c.1397G>C	p.Gly466Ala	p.G466A	ENST00000288602	NM_004333.4	466	gGa/gCa																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40353821	40353821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	108	547	1	ENST00000293328.3:c.2299C>T	p.Arg767Trp	p.R767W	ENST00000293328	NM_012448.3	767	Cgg/Tgg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056210	26056210	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	33	389	0	ENST00000343677.2:c.447G>C	p.Lys149Asn	p.K149N	ENST00000343677	NM_005319.3	149	aaG/aaC																																																																															
ATR	545	MSKCC	GRCh37	3	142184073	142184073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	76	350	0	ENST00000350721.4:c.6907C>T	p.Leu2303Phe	p.L2303F	ENST00000350721	NM_001184.3	2303	Ctt/Ttt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220428	1220428	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	131	717	0	ENST00000326873.7:c.521A>C	p.His174Pro	p.H174P	ENST00000326873	NM_000455.4	174	cAc/cCc																																																																															
FH	2271	MSKCC	GRCh37	1	241665755	241665755	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	63	510	0	ENST00000366560.3:c.1224C>G	p.Phe408Leu	p.F408L	ENST00000366560	NM_000143.3	408	ttC/ttG																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942174	71942174	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	182	726	0	ENST00000298229.2:c.1438G>C	p.Glu480Gln	p.E480Q	ENST00000298229	NM_001567.3	480	Gag/Cag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118716	115118716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	134	602	0	ENST00000257566.3:c.625C>T	p.Leu209Phe	p.L209F	ENST00000257566	NM_016569.3	209	Ctc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7572934	7572934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	126	522	0	ENST00000269305.4:c.1175C>T	p.Ser392Leu	p.S392L	ENST00000269305	NM_001126112.2	392	tCa/tTa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602934	10602934	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	141	714	0	ENST00000171111.5:c.644C>G	p.Ala215Gly	p.A215G	ENST00000171111	NM_203500.1	215	gCc/gGc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662146	227662149	+	missense_variant	Missense_Mutation	ONP	CGCA	CGCA	GCAT			P-0025872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	141	671	2	ENST00000305123.5:c.1306_1309delinsATGC	p.Cys436_Asp437delinsMetHis	p.C436_D437delinsMH	ENST00000305123	NM_005544.2	436	TGCGat/ATGCat																																																																															
BRAF	673	MSKCC	GRCh37	7	140481448	140481448	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	96	592	0	ENST00000288602.6:c.1360G>C	p.Asp454His	p.D454H	ENST00000288602	NM_004333.4	454	Gat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	20	424	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579362	7579362	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	52	671	0	ENST00000269305.4:c.325T>G	p.Phe109Val	p.F109V	ENST00000269305	NM_001126112.2	109	Ttc/Gtc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0025927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	98	759	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0025927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	95	674	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0025927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	53	355	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59821817	59821817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	119	576	2	ENST00000259008.2:c.2233G>A	p.Ala745Thr	p.A745T	ENST00000259008	NM_032043.2	745	Gca/Aca																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266792	198266792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	109	651	0	ENST00000335508.6:c.2140G>A	p.Glu714Lys	p.E714K	ENST00000335508	NM_012433.2	714	Gaa/Aaa																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346025	73346025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	138	371	0	ENST00000377767.4:c.1513C>T	p.His505Tyr	p.H505Y	ENST00000377767	NM_014953.3	505	Cat/Tat																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10248572	10248572	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	199	654	0	ENST00000340748.4:c.4181C>G	p.Ser1394Cys	p.S1394C	ENST00000340748		1394	tCc/tGc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161850	47161850	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0025928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	208	373	0	ENST00000409792.3:c.4276A>T	p.Lys1426Ter	p.K1426*	ENST00000409792	NM_014159.6	1426	Aaa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0025930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	109	770	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753660142		P-0025930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	218	987	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																															
SDHA	6389	MSKCC	GRCh37	5	251560	251560	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1042170		P-0025930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	58	1116	0	ENST00000264932.6:c.1771G>A	p.Ala591Thr	p.A591T	ENST00000264932	NM_004168.2	591	Gcg/Acg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	22	511	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	37	687	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044595	47044595	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	47	810	0	ENST00000329236.7:c.1858G>T	p.Glu620Ter	p.E620*	ENST00000329236	NM_001204466.1	620	Gag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	54	370	0	ENST00000304494.5:c.262G>A	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	88	Gag/Aag																																																																															
NF1	4763	MSKCC	GRCh37	17	29683597	29683599	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	ATG	ATG	TT			P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	50	386	1	ENST00000358273.4:c.7735_7737delinsTT	p.Met2579LeufsTer45	p.M2579Lfs*45	ENST00000358273	NM_001042492.2	2579	ATG/TT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739113	40739113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	24	418	1	ENST00000373198.4:c.3171G>T	p.Glu1057Asp	p.E1057D	ENST00000373198	NM_133170.3	1057	gaG/gaT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980802	40980802	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	42	496	0	ENST00000373198.4:c.1684T>A	p.Tyr562Asn	p.Y562N	ENST00000373198	NM_133170.3	562	Tat/Aat																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170015170	170015170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	43	660	0	ENST00000295797.4:c.1576G>A	p.Asp526Asn	p.D526N	ENST00000295797	NM_002740.5	526	Gat/Aat																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748270	41748270	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	39	741	0	ENST00000226382.2:c.499G>T	p.Ala167Ser	p.A167S	ENST00000226382	NM_003924.3	167	Gcc/Tcc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361226	66361226	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	27	314	0	ENST00000273854.3:c.946A>C	p.Ile316Leu	p.I316L	ENST00000273854	NM_004439.5	316	Atc/Ctc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485854	8485855	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	28	354	0	ENST00000356435.5:c.2962_2963insG	p.Thr988SerfsTer19	p.T988Sfs*19	ENST00000356435		988	acc/aGcc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411648	63411648	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	37	757	0	ENST00000330258.3:c.1519G>C	p.Glu507Gln	p.E507Q	ENST00000330258	NM_152424.3	507	Gag/Cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	185	531	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	472220	472220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	126	444	1	ENST00000399788.2:c.581C>A	p.Pro194His	p.P194H	ENST00000399788	NM_001042603.1	194	cCt/cAt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865474	57865474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	183	803	0	ENST00000228682.2:c.2951G>A	p.Arg984Lys	p.R984K	ENST00000228682	NM_005269.2	984	aGg/aAg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28601265	28601265	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	151	524	0	ENST00000241453.7:c.2167T>G	p.Phe723Val	p.F723V	ENST00000241453	NM_004119.2	723	Ttc/Gtc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514574	103514574	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	79	309	0	ENST00000355739.4:c.1075G>C	p.Glu359Gln	p.E359Q	ENST00000355739	NM_000123.3	359	Gag/Cag																																																																															
DICER1	23405	MSKCC	GRCh37	14	95573946	95573946	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0025936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	97	299	0	ENST00000343455.3:c.2803A>T	p.Arg935Ter	p.R935*	ENST00000343455	NM_177438.2	935	Aga/Tga																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675100	40675100	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1180	191	896	0	ENST00000249776.8:c.64T>G	p.Cys22Gly	p.C22G	ENST00000249776	NM_033286.3	22	Tgc/Ggc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72863696	72863696	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	194	694	0	ENST00000268489.5:c.3511A>G	p.Lys1171Glu	p.K1171E	ENST00000268489	NM_006885.3	1171	Aag/Gag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332923	152332923	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0025936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	106	323	0	ENST00000206249.3:c.1229T>A	p.Leu410Ter	p.L410*	ENST00000206249	NM_000125.3	410	tTg/tAg																																																																															
MED12	9968	MSKCC	GRCh37	X	70352797	70352797	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	205	774	0	ENST00000374080.3:c.4518G>T	p.Gln1506His	p.Q1506H	ENST00000374080		1506	caG/caT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0025808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	32	579	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	59	671	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463583	25463583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	84	674	0	ENST00000264709.3:c.2099C>T	p.Pro700Leu	p.P700L	ENST00000264709	NM_175629.2	700	cCa/cTa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603029	48603059	+	frameshift_variant	Frame_Shift_Del	DEL	CATCGACAGATGCAGCAGCAGGCGGCTACTG	CATCGACAGATGCAGCAGCAGGCGGCTACTG	-			P-0025808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	35	377	0	ENST00000342988.3:c.1332_1362del	p.Arg445LysfsTer21	p.R445Kfs*21	ENST00000342988	NM_005359.5	444	CATCGACAGATGCAGCAGCAGGCGGCTACTGca/ca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900050	151900050	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	37	633	0	ENST00000262189.6:c.4061del	p.Lys1354SerfsTer20	p.K1354Sfs*20	ENST00000262189	NM_170606.2	1354	aAg/ag																																																																															
AR	367	MSKCC	GRCh37	X	66765487	66765487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	44	761	0	ENST00000374690.3:c.499C>A	p.Leu167Met	p.L167M	ENST00000374690	NM_000044.3	167	Ctg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574005	7574005	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	422	578	0	ENST00000269305.4:c.1022del	p.Phe341SerfsTer4	p.F341Sfs*4	ENST00000269305	NM_001126112.2	341	tTc/tc																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108239	8108239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	118	659	2	ENST00000585124.1:c.985G>A	p.Ala329Thr	p.A329T	ENST00000585124	NM_004217.3	329	Gcc/Acc																																																																															
NF1	4763	MSKCC	GRCh37	17	29528428	29528428	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0025466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	83	342	0	ENST00000358273.4:c.1186-1G>A		p.X396_splice	ENST00000358273	NM_001042492.2	396																																																																																
UPF1	5976	MSKCC	GRCh37	19	18976166	18976166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	145	648	2	ENST00000262803.5:c.2926G>A	p.Val976Met	p.V976M	ENST00000262803	NM_002911.3	976	Gtg/Atg																																																																															
ATRX	546	MSKCC	GRCh37	X	76763976	76763976	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	265	605	0	ENST00000373344.5:c.7332G>T	p.Leu2444Phe	p.L2444F	ENST00000373344	NM_000489.3	2444	ttG/ttT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0025729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	114	499	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
POLE	5426	MSKCC	GRCh37	12	133238247	133238247	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0025729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	109	458	1	ENST00000320574.5:c.2730C>G	p.Tyr910Ter	p.Y910*	ENST00000320574	NM_006231.2	910	taC/taG																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179387	56179387	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0025729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	88	319	0	ENST00000399503.3:c.3700A>T	p.Lys1234Ter	p.K1234*	ENST00000399503	NM_005921.1	1234	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578507	7578507	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	218	1016	0	ENST00000269305.4:c.423C>G	p.Cys141Trp	p.C141W	ENST00000269305	NM_001126112.2	141	tgC/tgG																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934178	39934179	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	104	389	0	ENST00000378444.4:c.420dup	p.Pro141ThrfsTer45	p.P141Tfs*45	ENST00000378444	NM_001123385.1	140	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	159	687	1	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	protein_altering_variant	In_Frame_Ins	INS	-	-	GTT			P-0025741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	492	560	0	ENST00000275493.2:c.2308_2309insGTT	p.Asp770delinsGlyTyr	p.D770delinsGY	ENST00000275493	NM_005228.3	770	gac/gGTTac																																																																															
CDH1	999	MSKCC	GRCh37	16	68842606	68842606	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	127	651	2	ENST00000261769.5:c.542A>G	p.Asn181Ser	p.N181S	ENST00000261769	NM_004360.3	181	aAc/aGc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719415	190719415	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	42	420	0	ENST00000441310.2:c.1417G>T	p.Asp473Tyr	p.D473Y	ENST00000441310	NM_000534.4	473	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	36	536	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0025768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	101	570	2	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	104	485	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	80	187	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0025773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	172	472	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0025773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	107	372	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720709	89720709	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0025773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	66	104	0	ENST00000371953.3:c.860C>G	p.Ser287Ter	p.S287*	ENST00000371953	NM_000314.4	287	tCa/tGa																																																																															
APC	324	MSKCC	GRCh37	5	112175772	112175772	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	84	314	0	ENST00000257430.4:c.4483del	p.Ser1495ValfsTer12	p.S1495Vfs*12	ENST00000257430	NM_000038.5	1494	gAa/ga																																																																															
JAK3	3718	MSKCC	GRCh37	19	17951086	17951086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	226	588	0	ENST00000458235.1:c.1207C>T	p.Arg403Cys	p.R403C	ENST00000458235	NM_000215.3	403	Cgc/Tgc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81979857	81979857	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764693069		P-0025773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	42	376	0	ENST00000359376.3:c.3559C>T	p.Arg1187Trp	p.R1187W	ENST00000359376	NM_002661.3	1187	Cgg/Tgg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663358	227663358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	106	336	0	ENST00000305123.5:c.97C>T	p.Arg33Cys	p.R33C	ENST00000305123	NM_005544.2	33	Cgc/Tgc																																																																															
CDH1	999	MSKCC	GRCh37	16	68844172	68844172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	160	520	0	ENST00000261769.5:c.760G>T	p.Asp254Tyr	p.D254Y	ENST00000261769	NM_004360.3	254	Gat/Tat																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111434	8111434	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0025775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	128	322	0	ENST00000346208.3:c.922-2A>G		p.X308_splice	ENST00000346208		308																																																																																
NF1	4763	MSKCC	GRCh37	17	29657480	29657480	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	107	403	0	ENST00000358273.4:c.5780del	p.Leu1927TrpfsTer15	p.L1927Wfs*15	ENST00000358273	NM_001042492.2	1926	Ttt/tt																																																																															
ARAF	369	MSKCC	GRCh37	X	47426444	47426444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	185	449	0	ENST00000377045.4:c.787G>A	p.Val263Met	p.V263M	ENST00000377045	NM_001654.4	263	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	199	531	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602714	10602714	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	336	544	0	ENST00000171111.5:c.864C>A	p.Cys288Ter	p.C288*	ENST00000171111	NM_203500.1	288	tgC/tgA																																																																															
STK11	6794	MSKCC	GRCh37	19	1220644	1220645	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0025777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	266	456	0	ENST00000326873.7:c.662_663delinsT	p.Pro221LeufsTer66	p.P221Lfs*66	ENST00000326873	NM_000455.4	221	cCG/cT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	393	452	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0025779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	70	343	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577505	7577506	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTTC			P-0025779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	189	435	0	ENST00000269305.4:c.772_775dup	p.Asp259GlyfsTer6	p.D259Gfs*6	ENST00000269305	NM_001126112.2	259	gac/gGAAGac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0025792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	145	515	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0025792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	187	404	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175746	112175746	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	198	306	0	ENST00000257430.4:c.4455del	p.Asp1486IlefsTer21	p.D1486Ifs*21	ENST00000257430	NM_000038.5	1485	gcT/gc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813599	50813599	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	113	417	0	ENST00000398568.2:c.1153C>G	p.Leu385Val	p.L385V	ENST00000398568	NM_001042412.1	385	Ctt/Gtt																																																																															
CIC	23152	MSKCC	GRCh37	19	42794787	42794787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	106	454	0	ENST00000575354.2:c.1867G>A	p.Gly623Arg	p.G623R	ENST00000575354	NM_015125.3	623	Gga/Aga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936073	178936074	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTCTCT			P-0025792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	111	352	0	ENST00000263967.3:c.1618_1623dup	p.Leu540_Ser541dup	p.L540_S541dup	ENST00000263967	NM_006218.2	540	cct/cCTCTCTct																																																																															
MED12	9968	MSKCC	GRCh37	X	70347223	70347223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	259	263	0	ENST00000374080.3:c.2887G>A	p.Asp963Asn	p.D963N	ENST00000374080		963	Gat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	130	587	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0025803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	323	726	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0025803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	196	290	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981551	201981552	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0025803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	273	863	0	ENST00000359651.3:c.465_466insTA	p.Pro156TyrfsTer99	p.P156Yfs*99	ENST00000359651		155	-/TA																																																																															
PGR	5241	MSKCC	GRCh37	11	100998706	100998706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	182	841	1	ENST00000325455.5:c.1096G>T	p.Asp366Tyr	p.D366Y	ENST00000325455	NM_001202474.3	366	Gac/Tac																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5240268	5240268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	299	855	0	ENST00000357368.4:c.1646G>A	p.Arg549Gln	p.R549Q	ENST00000357368	NM_002850.3	549	cGg/cAg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180055990	180055990	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	235	763	0	ENST00000261937.6:c.995T>C	p.Phe332Ser	p.F332S	ENST00000261937	NM_182925.4	332	tTc/tCc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509025	106509025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	203	527	0	ENST00000359195.3:c.1019C>T	p.Thr340Ile	p.T340I	ENST00000359195	NM_002649.2	340	aCc/aTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057947	27057947	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	64	376	0	ENST00000324856.7:c.1655C>G	p.Ser552Ter	p.S552*	ENST00000324856	NM_006015.4	552	tCa/tGa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011144	12011144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	237	324	0	ENST00000353533.5:c.551C>T	p.Ser184Leu	p.S184L	ENST00000353533	NM_003010.3	184	tCg/tTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057835	27057835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	57	509	2	ENST00000324856.7:c.1543C>T	p.Gln515Ter	p.Q515*	ENST00000324856	NM_006015.4	515	Cag/Tag																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719140	190719140	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	36	250	0	ENST00000441310.2:c.1142C>G	p.Ser381Ter	p.S381*	ENST00000441310	NM_000534.4	381	tCa/tGa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980872	40980872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	37	322	0	ENST00000373198.4:c.1614G>C	p.Gln538His	p.Q538H	ENST00000373198	NM_133170.3	538	caG/caC																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881363	111881363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	49	360	1	ENST00000393256.3:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000393256	NM_006538.4	14	cGa/cAa																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29120995	29120995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	51	476	0	ENST00000328354.6:c.562G>A	p.Glu188Lys	p.E188K	ENST00000328354	NM_007194.3	188	Gaa/Aaa																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287404	33287404	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	44	362	0	ENST00000374542.5:c.1693C>T	p.Gln565Ter	p.Q565*	ENST00000374542	NM_001141970.1	565	Cag/Tag																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024332	31024332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	66	374	1	ENST00000375687.4:c.3817C>T	p.Arg1273Cys	p.R1273C	ENST00000375687	NM_015338.5	1273	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	184	356	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
BRCA1	672	MSKCC	GRCh37	17	41243911	41243911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	37	400	0	ENST00000357654.3:c.3637G>A	p.Glu1213Lys	p.E1213K	ENST00000357654	NM_007294.3	1213	Gaa/Aaa																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665346	138665346	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	47	524	0	ENST00000330315.3:c.219G>C	p.Lys73Asn	p.K73N	ENST00000330315	NM_023067.3	73	aaG/aaC																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780869	9780869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	43	453	0	ENST00000377346.4:c.1591G>A	p.Val531Met	p.V531M	ENST00000377346	NM_005026.3	531	Gtg/Atg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782306	9782306	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	32	361	0	ENST00000377346.4:c.2239G>C	p.Glu747Gln	p.E747Q	ENST00000377346	NM_005026.3	747	Gag/Cag																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784475	9784475	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	22	320	0	ENST00000377346.4:c.2860G>C	p.Glu954Gln	p.E954Q	ENST00000377346	NM_005026.3	954	Gaa/Caa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11300369	11300369	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	47	346	0	ENST00000361445.4:c.1777G>C	p.Glu593Gln	p.E593Q	ENST00000361445	NM_004958.3	593	Gaa/Caa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123325136	123325136	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	45	441	0	ENST00000358487.5:c.192G>C	p.Leu64Phe	p.L64F	ENST00000358487	NM_000141.4	64	ttG/ttC																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195253	102195253	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	41	232	0	ENST00000263464.3:c.13G>C	p.Glu5Gln	p.E5Q	ENST00000263464	NM_001165.4	5	Gaa/Caa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858524	57858524	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	66	467	0	ENST00000228682.2:c.262C>G	p.Leu88Val	p.L88V	ENST00000228682	NM_005269.2	88	Ctg/Gtg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858629	57858629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	46	302	0	ENST00000228682.2:c.367C>T	p.His123Tyr	p.H123Y	ENST00000228682	NM_005269.2	123	Cat/Tat																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060728	38060728	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	42	602	0	ENST00000250448.2:c.1261G>C	p.Glu421Gln	p.E421Q	ENST00000250448	NM_004496.3	421	Gaa/Caa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749170	43749170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	82	523	1	ENST00000382044.4:c.1636G>A	p.Glu546Lys	p.E546K	ENST00000382044	NM_001141980.1	546	Gaa/Aaa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729222	66729222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	116	369	0	ENST00000307102.5:c.430G>C	p.Glu144Gln	p.E144Q	ENST00000307102	NM_002755.3	144	Gag/Cag																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136368	2136368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	153	360	2	ENST00000219476.3:c.4837G>A	p.Asp1613Asn	p.D1613N	ENST00000219476	NM_000548.3	1613	Gac/Aac																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029392	14029392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	52	245	0	ENST00000311895.7:c.1603G>A	p.Asp535Asn	p.D535N	ENST00000311895	NM_005236.2	535	Gat/Aat																																																																															
CDH1	999	MSKCC	GRCh37	16	68862207	68862207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	216	411	0	ENST00000261769.5:c.2295G>C	p.Gln765His	p.Q765H	ENST00000261769	NM_004360.3	765	caG/caC																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349612	89349612	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	389	611	1	ENST00000301030.4:c.3338G>A	p.Trp1113Ter	p.W1113*	ENST00000301030	NM_001256183.1	1113	tGg/tAg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41223183	41223183	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	61	393	0	ENST00000357654.3:c.4748G>C	p.Arg1583Thr	p.R1583T	ENST00000357654	NM_007294.3	1583	aGa/aCa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244274	41244274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	71	577	0	ENST00000357654.3:c.3274G>A	p.Glu1092Lys	p.E1092K	ENST00000357654	NM_007294.3	1092	Gag/Aag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41276089	41276089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	74	408	0	ENST00000357654.3:c.25G>A	p.Glu9Lys	p.E9K	ENST00000357654	NM_007294.3	9	Gaa/Aaa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63545744	63545744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	39	392	1	ENST00000307078.5:c.850C>T	p.His284Tyr	p.H284Y	ENST00000307078	NM_004655.3	284	Cac/Tac																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2223466	2223466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	35	274	1	ENST00000398665.3:c.3577G>A	p.Asp1193Asn	p.D1193N	ENST00000398665	NM_032482.2	1193	Gac/Aac																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231618	5231618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	11	76	0	ENST00000357368.4:c.1858G>A	p.Ala620Thr	p.A620T	ENST00000357368	NM_002850.3	620	Gcc/Acc																																																																															
CALR	811	MSKCC	GRCh37	19	13054400	13054400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	68	507	1	ENST00000316448.5:c.1010C>T	p.Ala337Val	p.A337V	ENST00000316448	NM_004343.3	337	gCa/gTa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353760	15353760	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	55	504	0	ENST00000263377.2:c.3120C>G	p.Ile1040Met	p.I1040M	ENST00000263377	NM_058243.2	1040	atC/atG																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220908	36220908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	98	199	0	ENST00000222270.7:c.4958G>A	p.Cys1653Tyr	p.C1653Y	ENST00000222270	NM_014727.1	1653	tGc/tAc																																																																															
RRAS	6237	MSKCC	GRCh37	19	50139048	50139048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	76	513	1	ENST00000246792.3:c.515C>T	p.Ser172Leu	p.S172L	ENST00000246792	NM_006270.3	172	tCg/tTg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703608	47703608	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	46	396	0	ENST00000233146.2:c.2108C>G	p.Ser703Cys	p.S703C	ENST00000233146	NM_000251.2	703	tCc/tGc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661158	227661158	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	35	477	0	ENST00000305123.5:c.2297C>G	p.Ser766Ter	p.S766*	ENST00000305123	NM_005544.2	766	tCa/tGa																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62290843	62290843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	131	273	0	ENST00000508582.2:c.88G>A	p.Glu30Lys	p.E30K	ENST00000508582		30	Gaa/Aaa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44515634	44515634	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	54	472	0	ENST00000291552.4:c.262G>C	p.Glu88Gln	p.E88Q	ENST00000291552	NM_006758.2	88	Gaa/Caa																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182683383	182683383	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	55	396	0	ENST00000292782.4:c.162G>C	p.Glu54Asp	p.E54D	ENST00000292782	NM_020640.2	54	gaG/gaC																																																																															
RAD50	10111	MSKCC	GRCh37	5	131893142	131893142	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	39	216	0	ENST00000265335.6:c.126G>C	p.Lys42Asn	p.K42N	ENST00000265335		42	aaG/aaC																																																																															
NSD1	64324	MSKCC	GRCh37	5	176696616	176696616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	46	158	0	ENST00000439151.2:c.5317G>A	p.Glu1773Lys	p.E1773K	ENST00000439151	NM_022455.4	1773	Gag/Aag																																																																															
NSD1	64324	MSKCC	GRCh37	5	176696731	176696731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	108	359	0	ENST00000439151.2:c.5432G>A	p.Arg1811Gln	p.R1811Q	ENST00000439151	NM_022455.4	1811	cGa/cAa																																																																															
HGF	3082	MSKCC	GRCh37	7	81350074	81350074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	46	303	0	ENST00000222390.5:c.1258G>A	p.Glu420Lys	p.E420K	ENST00000222390	NM_000601.4	420	Gaa/Aaa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509042	106509042	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	41	338	0	ENST00000359195.3:c.1036C>A	p.His346Asn	p.H346N	ENST00000359195	NM_002649.2	346	Cac/Aac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528593	8528593	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	49	255	0	ENST00000356435.5:c.539C>T	p.Ser180Leu	p.S180L	ENST00000356435		180	tCa/tTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	391	534	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0025806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	141	383	1	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576899	7576900	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0025806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	388	611	0	ENST00000269305.4:c.945_946dup	p.Pro316LeufsTer30	p.P316Lfs*30	ENST00000269305	NM_001126112.2	316	ccc/cTCcc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416615	121416615	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	203	551	0	ENST00000257555.6:c.46del	p.Leu16CysfsTer6	p.L16Cfs*6	ENST00000257555		15	gCc/gc																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123480496	123480496	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	136	409	0	ENST00000371139.4:c.4G>C	p.Asp2His	p.D2H	ENST00000371139	NM_001114937.2	2	Gac/Cac																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	97	452	0	ENST00000304494.5:c.247C>A	p.His83Asn	p.H83N	ENST00000304494	NM_000077.4	83	Cac/Aac																																																																															
ATRX	546	MSKCC	GRCh37	X	76889163	76889163	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	153	477	0	ENST00000373344.5:c.4847A>G	p.Lys1616Arg	p.K1616R	ENST00000373344	NM_000489.3	1616	aAa/aGa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690802	89690802	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0025823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	193	298	0	ENST00000371953.3:c.210-1G>C		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																																
BRCA2	675	MSKCC	GRCh37	13	32911713	32911713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	315	531	0	ENST00000380152.3:c.3221G>A	p.Ser1074Asn	p.S1074N	ENST00000380152		1074	aGt/aAt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344075	118344076	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	145	362	0	ENST00000534358.1:c.2206dupA	p.Arg736LysfsTer7	p.R736Kfs*7	ENST00000534358	NM_005933.3	734	aga/agAa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17122373	17122373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	82	528	0	ENST00000285071.4:c.1022G>A	p.Arg341Gln	p.R341Q	ENST00000285071	NM_144997.5	341	cGg/cAg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100271	8100272	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0025826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	97	562	0	ENST00000346208.3:c.245_246del	p.Ser82ThrfsTer220	p.S82Tfs*220	ENST00000346208		82	aGC/a																																																																															
CARD11	84433	MSKCC	GRCh37	7	2983972	2983972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	73	693	1	ENST00000396946.4:c.558G>T	p.Glu186Asp	p.E186D	ENST00000396946	NM_032415.4	186	gaG/gaT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	162	387	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68849517	68849517	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	232	567	0	ENST00000261769.5:c.1420del	p.Thr474ProfsTer7	p.T474Pfs*7	ENST00000261769	NM_004360.3	474	Acc/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0025880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	82	581	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0025880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	54	449	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
ATM	472	MSKCC	GRCh37	11	108121433	108121435	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0025880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	13	239	0	ENST00000278616.4:c.1241_1243del	p.Gln414_Ile415delinsLeu	p.Q414_I415delinsL	ENST00000278616	NM_000051.3	414	cAGAtt/ctt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982382	25982382	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	35	353	0	ENST00000435504.4:c.908T>A	p.Leu303Gln	p.L303Q	ENST00000435504		303	cTg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012413	152012413	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	32	301	0	ENST00000262189.6:c.400T>A	p.Cys134Ser	p.C134S	ENST00000262189	NM_170606.2	134	Tgc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0025881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	386	705	3	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	463	442	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555267	106555267	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3889	272	625	1	ENST00000369096.4:c.2384C>A	p.Ser795Ter	p.S795*	ENST00000369096	NM_001198.3	795	tCa/tAa																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	85	381	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372206	55372206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	70	392	0	ENST00000297316.4:c.896C>T	p.Ala299Val	p.A299V	ENST00000297316	NM_022454.3	299	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	121	347	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679733	30679733	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	119	452	0	ENST00000376406.3:c.1986G>C	p.Gln662His	p.Q662H	ENST00000376406	NM_014641.2	662	caG/caC																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112888210	112888210	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	63	513	0	ENST00000351677.2:c.226G>C	p.Glu76Gln	p.E76Q	ENST00000351677	NM_002834.3	76	Gag/Cag																																																																															
ATR	545	MSKCC	GRCh37	3	142261554	142261555	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	116	539	0	ENST00000350721.4:c.3402dupT	p.Asn1135Ter	p.N1135*	ENST00000350721	NM_001184.3	1134	-/T																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	134	345	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
CDC73	79577	MSKCC	GRCh37	1	193117054	193117054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	74	448	0	ENST00000367435.3:c.787C>T	p.Arg263Cys	p.R263C	ENST00000367435	NM_024529.4	263	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	81	356	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	103	557	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																															
MED12	9968	MSKCC	GRCh37	X	70361148	70361149	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAC			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	23	196	2	ENST00000374080.3:c.6338_6339insCCA	p.Gln2112_Gln2113insHis	p.Q2112_Q2113insH	ENST00000374080		2112	-/CAC																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	72	333	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81554355	81554355	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	88	404	0	ENST00000298171.2:c.379del	p.Leu127SerfsTer2	p.L127Sfs*2	ENST00000298171	NM_000369.2	125	ctC/ct																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270530	98270530	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	13	210	0	ENST00000331920.6:c.114delG	p.Leu39CysfsTer41	p.L39Cfs*41	ENST00000331920	NM_000264.3	38	ggG/gg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157505462	157505462	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	98	380	0	ENST00000346085.5:c.3443A>G	p.Tyr1148Cys	p.Y1148C	ENST00000346085	NM_020732.3	1148	tAc/tGc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367288	50367288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775793261		P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	72	354	0	ENST00000331340.3:c.95C>T	p.Pro32Leu	p.P32L	ENST00000331340	NM_006060.4	32	cCg/cTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346158	89346158	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	25	154	0	ENST00000301030.4:c.6792del	p.Ala2265ProfsTer72	p.A2265Pfs*72	ENST00000301030	NM_001256183.1	2264	ccC/cc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1620992	1620992	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	161	685	0	ENST00000344749.5:c.1068del	p.Val357TrpfsTer37	p.V357Wfs*37	ENST00000344749	NM_001136139.2	356	ccC/cc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123837	46123837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	57	265	0	ENST00000334344.6:c.109delA	p.Ile37SerfsTer21	p.I37Sfs*21	ENST00000334344	NM_152641.2	35	Aaa/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106562	27106562	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	141	518	0	ENST00000324856.7:c.6176del	p.Asn2059ThrfsTer76	p.N2059Tfs*76	ENST00000324856	NM_006015.4	2058	gAa/ga																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863319	57863319	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	114	494	0	ENST00000228682.2:c.1418del	p.Gly473AlafsTer40	p.G473Afs*40	ENST00000228682	NM_005269.2	472	Ggg/gg																																																																															
EZH2	2146	MSKCC	GRCh37	7	148504761	148504761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	120	459	0	ENST00000320356.2:c.2233G>A	p.Glu745Lys	p.E745K	ENST00000320356	NM_004456.4	745	Gaa/Aaa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163554	32163554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	105	394	1	ENST00000375023.3:c.5672del	p.Gly1891AlafsTer13	p.G1891Afs*13	ENST00000375023	NM_004557.3	1891	gGc/gc																																																																															
ATR	545	MSKCC	GRCh37	3	142186895	142186895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	58	320	1	ENST00000350721.4:c.6568C>T	p.Arg2190Cys	p.R2190C	ENST00000350721	NM_001184.3	2190	Cgt/Tgt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401004	139401004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	115	473	0	ENST00000277541.6:c.3989G>A	p.Arg1330His	p.R1330H	ENST00000277541	NM_017617.3	1330	cGc/cAc																																																																															
ALK	238	MSKCC	GRCh37	2	29462643	29462643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	123	570	0	ENST00000389048.3:c.2258G>A	p.Arg753Gln	p.R753Q	ENST00000389048	NM_004304.4	753	cGg/cAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	65	314	1	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025857	48025857	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1472949451		P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	69	345	0	ENST00000234420.5:c.741del	p.Lys247AsnfsTer32	p.K247Nfs*32	ENST00000234420	NM_000179.2	245	atA/at																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821959	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	42	197	0	ENST00000268489.5:c.10216G>C	p.Gly3406Arg	p.G3406R	ENST00000268489	NM_006885.3	3406	Ggg/Cgg																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2492097	2492097	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	139	639	2	ENST00000355716.4:c.500delC	p.Pro167ArgfsTer23	p.P167Rfs*23	ENST00000355716	NM_003820.2	165	tgC/tg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37873597	37873597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	112	537	0	ENST00000269571.5:c.1762G>A	p.Ala588Thr	p.A588T	ENST00000269571		588	Gcc/Acc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	119	480	1	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	129	494	3	ENST00000382891.5:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382891	NM_133335.3	1341	Ccc/cc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12043203	12043203	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	61	349	0	ENST00000353533.5:c.1086+2T>C		p.X362_splice	ENST00000353533	NM_003010.3	362																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41306544	41306544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	89	422	0	ENST00000373198.4:c.1115C>T	p.Pro372Leu	p.P372L	ENST00000373198	NM_133170.3	372	cCg/cTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229011	36229011	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	79	586	0	ENST00000222270.7:c.7795delG	p.Glu2599ArgfsTer15	p.E2599Rfs*15	ENST00000222270	NM_014727.1	2597	gcG/gc																																																																															
MED12	9968	MSKCC	GRCh37	X	70356269	70356269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	78	187	0	ENST00000374080.3:c.5164C>T	p.Arg1722Trp	p.R1722W	ENST00000374080		1722	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435199	49435199	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	73	317	0	ENST00000301067.7:c.6354delC	p.Ala2119LeufsTer25	p.A2119Lfs*25	ENST00000301067	NM_003482.3	2118	ccC/cc																																																																															
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	39	471	2	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																															
CD276	80381	MSKCC	GRCh37	15	73994848	73994848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	25	83	0	ENST00000318443.5:c.332G>A	p.Arg111His	p.R111H	ENST00000318443	NM_001024736.1	111	cGc/cAc																																																																															
RB1	5925	MSKCC	GRCh37	13	49039143	49039143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	70	239	0	ENST00000267163.4:c.2221C>T	p.Arg741Cys	p.R741C	ENST00000267163	NM_000321.2	741	Cgt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993738	72993738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	90	295	0	ENST00000268489.5:c.307C>T	p.Arg103Cys	p.R103C	ENST00000268489	NM_006885.3	103	Cgc/Tgc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856434	111856434	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	72	282	0	ENST00000341259.2:c.489delC	p.Thr165ProfsTer32	p.T165Pfs*32	ENST00000341259	NM_005475.2	162	gCc/gc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141595382	141595382	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	112	551	1	ENST00000220592.5:c.51del	p.Ile18SerfsTer121	p.I18Sfs*121	ENST00000220592	NM_012154.3	17	ccC/cc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942232	71942232	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs775939148		P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	68	282	0	ENST00000298229.2:c.1496C>T	p.Pro499Leu	p.P499L	ENST00000298229	NM_001567.3	499	cCg/cTg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780280	9780280	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	68	421	0	ENST00000377346.4:c.1450T>C	p.Tyr484His	p.Y484H	ENST00000377346	NM_005026.3	484	Tac/Cac																																																																															
SPEN	23013	MSKCC	GRCh37	1	16263923	16263923	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	127	600	0	ENST00000375759.3:c.10292T>A	p.Phe3431Tyr	p.F3431Y	ENST00000375759	NM_015001.2	3431	tTc/tAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105916	27105916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	97	348	2	ENST00000324856.7:c.5527C>T	p.His1843Tyr	p.H1843Y	ENST00000324856	NM_006015.4	1843	Cac/Tac																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797951	45797951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	88	492	0	ENST00000372115.3:c.778C>T	p.Arg260Trp	p.R260W	ENST00000372115	NM_001048171.1	260	Cgg/Tgg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115261337	115261337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	78	342	0	ENST00000438362.2:c.2384G>A	p.Arg795Gln	p.R795Q	ENST00000438362	NM_001242891.1	795	cGa/cAa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100532	8100532	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	113	475	1	ENST00000346208.3:c.509del	p.Pro170GlnfsTer25	p.P170Qfs*25	ENST00000346208		169	aCc/ac																																																																															
RET	5979	MSKCC	GRCh37	10	43601998	43601998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	113	531	2	ENST00000355710.3:c.1042C>T	p.Arg348Trp	p.R348W	ENST00000355710	NM_020975.4	348	Cgg/Tgg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202516	67202516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	103	459	2	ENST00000312629.5:c.1325C>A	p.Pro442His	p.P442H	ENST00000312629	NM_003952.2	442	cCc/cAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307639	118307639	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	112	503	0	ENST00000534358.1:c.416del	p.Gly139GlufsTer11	p.G139Efs*11	ENST00000534358	NM_005933.3	138	Ggg/gg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427545	49427545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	92	383	1	ENST00000301067.7:c.10943C>T	p.Pro3648Leu	p.P3648L	ENST00000301067	NM_003482.3	3648	cCg/cTg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563282	21563282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	88	537	1	ENST00000382592.4:c.637G>A	p.Asp213Asn	p.D213N	ENST00000382592	NM_014572.2	213	Gac/Aac																																																																															
CDK8	1024	MSKCC	GRCh37	13	26975674	26975675	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	105	442	0	ENST00000381527.3:c.1189_1190dup	p.Gln397HisfsTer6	p.Q397Hfs*6	ENST00000381527	NM_001260.1	394	-/CA																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871732	35871732	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	95	411	0	ENST00000216797.5:c.774G>T	p.Trp258Cys	p.W258C	ENST00000216797	NM_020529.2	258	tgG/tgT																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396895	396895	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	147	589	0	ENST00000262320.3:c.131T>C	p.Phe44Ser	p.F44S	ENST00000262320	NM_003502.3	44	tTc/tCc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3634797	3634797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	152	575	4	ENST00000294008.3:c.4712C>T	p.Thr1571Met	p.T1571M	ENST00000294008	NM_032444.2	1571	aCg/aTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3842002	3842002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	92	341	0	ENST00000262367.5:c.1310G>A	p.Ser437Asn	p.S437N	ENST00000262367	NM_004380.2	437	aGt/aAt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23619314	23619314	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	53	439	0	ENST00000261584.4:c.3221T>C	p.Leu1074Pro	p.L1074P	ENST00000261584	NM_024675.3	1074	cTg/cCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832058	72832058	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	87	440	0	ENST00000268489.5:c.4523G>A	p.Ser1508Asn	p.S1508N	ENST00000268489	NM_006885.3	1508	aGt/aAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984466	72984466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	71	464	0	ENST00000268489.5:c.3118C>A	p.Leu1040Ile	p.L1040I	ENST00000268489	NM_006885.3	1040	Ctc/Atc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347173	89347173	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	60	370	1	ENST00000301030.4:c.5777del	p.Pro1926ArgfsTer37	p.P1926Rfs*37	ENST00000301030	NM_001256183.1	1926	cCg/cg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351124	89351124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	111	439	0	ENST00000301030.4:c.1826G>A	p.Ser609Asn	p.S609N	ENST00000301030	NM_001256183.1	609	aGc/aAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879673	37879673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	91	500	0	ENST00000269571.5:c.2048G>A	p.Arg683Gln	p.R683Q	ENST00000269571		683	cGg/cAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117738	70117739	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	100	541	0	ENST00000245479.2:c.210dup	p.Val71ArgfsTer181	p.V71Rfs*181	ENST00000245479	NM_000346.3	69	ttc/ttCc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279932	18279932	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1423694208		P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	155	544	2	ENST00000222254.8:c.2015G>A	p.Arg672His	p.R672H	ENST00000222254	NM_005027.3	672	cGc/cAc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965724	18965724	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	152	640	1	ENST00000262803.5:c.1302G>T	p.Glu434Asp	p.E434D	ENST00000262803	NM_002911.3	434	gaG/gaT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216188	36216188	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	131	445	0	ENST00000222270.7:c.3596G>C	p.Gly1199Ala	p.G1199A	ENST00000222270	NM_014727.1	1199	gGc/gCc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229184	36229184	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	26	364	2	ENST00000222270.7:c.7874G>A	p.Gly2625Asp	p.G2625D	ENST00000222270	NM_014727.1	2625	gGc/gAc																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140130	50140130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	87	491	2	ENST00000246792.3:c.295C>T	p.Arg99Cys	p.R99C	ENST00000246792	NM_006270.3	99	Cgt/Tgt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469629	25469629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	125	484	1	ENST00000264709.3:c.1139C>T	p.Ala380Val	p.A380V	ENST00000264709	NM_175629.2	380	gCg/gTg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25964965	25964965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	102	366	2	ENST00000435504.4:c.4241G>A	p.Gly1414Asp	p.G1414D	ENST00000435504		1414	gGc/gAc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607487	46607487	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	130	556	2	ENST00000263734.3:c.1681delC	p.Gln561SerfsTer7	p.Q561Sfs*7	ENST00000263734	NM_001430.4	559	aCc/ac																																																																															
REL	5966	MSKCC	GRCh37	2	61144018	61144018	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	45	292	0	ENST00000295025.8:c.405del	p.Lys135AsnfsTer3	p.K135Nfs*3	ENST00000295025	NM_002908.2	134	gAa/ga																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279815	46279820	+	inframe_deletion	In_Frame_Del	DEL	GCAGCA	GCAGCA	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	22	332	1	ENST00000371998.3:c.3756_3761del	p.Gln1275_Gln1276del	p.Q1275_Q1276del	ENST00000371998		1247	atGCAGCAg/atg																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945542	54945542	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs200181472		P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	142	678	1	ENST00000312783.6:c.1028G>A	p.Arg343Gln	p.R343Q	ENST00000312783	NM_198436.1	343	cGg/cAg																																																																															
RHOA	387	MSKCC	GRCh37	3	49397752	49397752	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	134	499	0	ENST00000418115.1:c.472G>T	p.Glu158Ter	p.E158*	ENST00000418115	NM_001664.2	158	Gag/Tag																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940111	49940111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	101	428	0	ENST00000296474.3:c.932C>G	p.Ala311Gly	p.A311G	ENST00000296474	NM_002447.2	311	gCc/gGc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134825389	134825389	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	99	437	0	ENST00000398015.3:c.905C>A	p.Thr302Asn	p.T302N	ENST00000398015	NM_004441.4	302	aCc/aAc																																																																															
BCL6	604	MSKCC	GRCh37	3	187442853	187442853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	79	289	1	ENST00000232014.4:c.1853G>A	p.Arg618His	p.R618H	ENST00000232014	NM_001130845.1	618	cGt/cAt																																																																															
TET2	54790	MSKCC	GRCh37	4	106196928	106196928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	20	263	1	ENST00000380013.4:c.5261G>A	p.Gly1754Asp	p.G1754D	ENST00000380013	NM_001127208.2	1754	gGt/gAt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176662870	176662870	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	86	454	0	ENST00000439151.2:c.3845T>C	p.Leu1282Ser	p.L1282S	ENST00000439151	NM_022455.4	1282	tTg/tCg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93964472	93964472	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	96	525	0	ENST00000369303.4:c.2425C>T	p.Gln809Ter	p.Q809*	ENST00000369303	NM_004440.3	809	Cag/Tag																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200183	138200183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	69	351	0	ENST00000237289.4:c.1601G>A	p.Gly534Glu	p.G534E	ENST00000237289	NM_001270507.1	534	gGg/gAg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100434	157100445	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGG	GGCGGCGGCGGG	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	13	20	1	ENST00000346085.5:c.1383_1394del	p.Ala462_Gly465del	p.A462_G465del	ENST00000346085	NM_020732.3	457	gcGGCGGCGGCGGGg/gcg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371882	55371882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	58	211	0	ENST00000297316.4:c.572G>A	p.Gly191Asp	p.G191D	ENST00000297316	NM_022454.3	191	gGc/gAc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87325566	87325566	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	23	350	0	ENST00000277120.3:c.443A>G	p.Asn148Ser	p.N148S	ENST00000277120		148	aAt/aGt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98242751	98242751	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	99	381	0	ENST00000331920.6:c.866A>G	p.His289Arg	p.H289R	ENST00000331920	NM_000264.3	289	cAt/cGt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135778112	135778112	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	83	468	0	ENST00000298552.3:c.2271A>C	p.Glu757Asp	p.E757D	ENST00000298552	NM_001162426.1	757	gaA/gaC																																																																															
TSC1	7248	MSKCC	GRCh37	9	135800991	135800993	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	45	370	0	ENST00000298552.3:c.344_346del	p.Ser115del	p.S115del	ENST00000298552	NM_001162426.1	115	tCTTta/tta																																																																															
RXRA	6256	MSKCC	GRCh37	9	137218489	137218489	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	20	128	0	ENST00000481739.1:c.12A>T	p.Lys4Asn	p.K4N	ENST00000481739	NM_002957.4	4	aaA/aaT																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15838418	15838418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	165	198	0	ENST00000307771.7:c.916C>T	p.Arg306Trp	p.R306W	ENST00000307771	NM_005089.3	306	Cgg/Tgg																																																																															
AR	367	MSKCC	GRCh37	X	66766195	66766195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	45	139	0	ENST00000374690.3:c.1207G>A	p.Ala403Thr	p.A403T	ENST00000374690	NM_000044.3	403	Gcg/Acg																																																																															
MED12	9968	MSKCC	GRCh37	X	70347951	70347951	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	23	270	0	ENST00000374080.3:c.3190G>T	p.Gly1064Trp	p.G1064W	ENST00000374080		1064	Ggg/Tgg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37050384	37050387	+	frameshift_variant	Frame_Shift_Ins	INS	AAGT	AAGT	GGAAGC			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	64	424	0	ENST00000231790.2:c.533_536delinsGGAAGC	p.Glu178GlyfsTer25	p.E178Gfs*25	ENST00000231790	NM_000249.3	178	gAAGTt/gGGAAGCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	48	481	0	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65307276	65307277	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0025886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	33	321	0	ENST00000342505.4:c.2411_2412del	p.Arg804IlefsTer3	p.R804Ifs*3	ENST00000342505	NM_002227.2	804	aGA/a																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457630	67457630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	62	483	1	ENST00000327367.4:c.440C>T	p.Pro147Leu	p.P147L	ENST00000327367	NM_005902.3	147	cCg/cTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68844112	68844112	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	91	422	1	ENST00000261769.5:c.700G>T	p.Ala234Ser	p.A234S	ENST00000261769	NM_004360.3	234	Gct/Tct																																																																															
APC	324	MSKCC	GRCh37	5	112175422	112175435	+	frameshift_variant	Frame_Shift_Del	DEL	TCAGGAGACCCCAC	TCAGGAGACCCCAC	-			P-0025886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	24	225	0	ENST00000257430.4:c.4134_4147del	p.Gln1378HisfsTer3	p.Q1378Hfs*3	ENST00000257430	NM_000038.5	1377	gtTCAGGAGACCCCACtc/gttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	169	477	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286209	66286209	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	156	438	0	ENST00000273854.3:c.1477G>T	p.Asp493Tyr	p.D493Y	ENST00000273854	NM_004439.5	493	Gat/Tat																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732957	30732957	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs727504421		P-0025915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	30	249	0	ENST00000295754.5:c.1570G>A	p.Asp524Asn	p.D524N	ENST00000295754	NM_003242.5	524	Gac/Aac																																																																															
ATM	472	MSKCC	GRCh37	11	108106423	108106423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	98	209	0	ENST00000278616.4:c.358C>T	p.Leu120Phe	p.L120F	ENST00000278616	NM_000051.3	120	Ctc/Ttc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	184	461	0	ENST00000326873.7:c.580G>C	p.Asp194His	p.D194H	ENST00000326873	NM_000455.4	194	Gac/Cac																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715616	30715616	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	66	257	0	ENST00000359013.4:c.1349T>G	p.Met450Arg	p.M450R	ENST00000359013	NM_001024847.2	450	aTg/aGg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168468	56168468	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0025915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	102	171	0	ENST00000399503.3:c.1424G>T	p.Trp475Leu	p.W475L	ENST00000399503	NM_005921.1	475	tGg/tTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965410	68965410	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	273	635	0	ENST00000288368.4:c.1022G>T	p.Cys341Phe	p.C341F	ENST00000288368	NM_024870.2	341	tGt/tTt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137309025	137309025	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	210	480	0	ENST00000481739.1:c.632G>T	p.Arg211Leu	p.R211L	ENST00000481739	NM_002957.4	211	cGt/cTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241678	55241678	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs397517085		P-0025916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	330	583	0	ENST00000275493.2:c.2126A>C	p.Glu709Ala	p.E709A	ENST00000275493	NM_005228.3	709	gAa/gCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	300	613	0	ENST00000275493.2:c.2582T>G	p.Leu861Arg	p.L861R	ENST00000275493	NM_005228.3	861	cTg/cGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604787	48604787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	138	365	1	ENST00000342988.3:c.1609G>A	p.Asp537Asn	p.D537N	ENST00000342988	NM_005359.5	537	Gac/Aac																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52702546	52702546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	183	539	0	ENST00000394830.3:c.352C>T	p.Leu118Phe	p.L118F	ENST00000394830	NM_018313.4	118	Ctt/Ttt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	85	563	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ATM	472	MSKCC	GRCh37	11	108121578	108121641	+	frameshift_variant	Frame_Shift_Del	DEL	TGCATTGTGTCAAGACAAGAGGTCAAACCTAGAAAGCTCACAAAAGTCAGATTTATTAAAACTC	TGCATTGTGTCAAGACAAGAGGTCAAACCTAGAAAGCTCACAAAAGTCAGATTTATTAAAACTC	CGCAT			P-0025922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	73	591	2	ENST00000278616.4:c.1386_1449delinsCGCAT	p.Cys465GlufsTer2	p.C465Efs*2	ENST00000278616	NM_000051.3	462	gtTGCATTGTGTCAAGACAAGAGGTCAAACCTAGAAAGCTCACAAAAGTCAGATTTATTAAAACTC/gtCGCAT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178937044	178937044	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	51	445	0	ENST00000263967.3:c.1725T>G	p.Asn575Lys	p.N575K	ENST00000263967	NM_006218.2	575	aaT/aaG																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592031	67592031	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	58	293	0	ENST00000274335.5:c.1847T>C	p.Leu616Ser	p.L616S	ENST00000274335		616	tTg/tCg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115920	8115921	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CACCCGCCATCCAGCCTGT			P-0025924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	86	507	0	ENST00000346208.3:c.1268_1286dup	p.Phe430ProfsTer83	p.F430Pfs*83	ENST00000346208		422	-/CACCCGCCATCCAGCCTGT																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128028995	128028995	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	190	686	0	ENST00000285398.2:c.1862A>T	p.Asn621Ile	p.N621I	ENST00000285398	NM_000122.1	621	aAt/aTt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513263	106513263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	229	444	0	ENST00000359195.3:c.2167G>A	p.Gly723Ser	p.G723S	ENST00000359195	NM_002649.2	723	Ggc/Agc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877140	151877140	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	307	552	0	ENST00000262189.6:c.7221del	p.Ser2408HisfsTer44	p.S2408Hfs*44	ENST00000262189	NM_170606.2	2407	ggG/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	299	539	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0025942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	105	468	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112174091	112174094	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0025942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	154	324	0	ENST00000257430.4:c.2802_2805delTTAC	p.Tyr935IlefsTer19	p.Y935Ifs*19	ENST00000257430	NM_000038.5	934	ACTTac/ac																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439717	51439719	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0025942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	68	331	0	ENST00000262662.1:c.284_286del	p.Asp95del	p.D95del	ENST00000262662		94	gcTGAt/gct																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175516	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAGTGAAC	CAGAGTGAAC	-			P-0025942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	147	320	1	ENST00000257430.4:c.4218_4227del	p.Gln1406HisfsTer6	p.Q1406Hfs*6	ENST00000257430	NM_000038.5	1406	CAGAGTGAACca/ca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859693	151859693	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146298908		P-0025942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	53	294	0	ENST00000262189.6:c.10969G>A	p.Asp3657Asn	p.D3657N	ENST00000262189	NM_170606.2	3657	Gac/Aac																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372202	55372202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	59	192	1	ENST00000297316.4:c.892G>A	p.Gly298Ser	p.G298S	ENST00000297316	NM_022454.3	298	Ggc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0025713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	67	783	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	44	495	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233079	69233180	+	inframe_deletion	In_Frame_Del	DEL	ATGAAATGAATCCCCCCCTTCCATCACATTGCAACAGATGTTGGGCCCTTCGTGAGAATTGGCTTCCTGAAGATAAAGGGAAAGATAAAGGGGAAATCTCTG	ATGAAATGAATCCCCCCCTTCCATCACATTGCAACAGATGTTGGGCCCTTCGTGAGAATTGGCTTCCTGAAGATAAAGGGAAAGATAAAGGGGAAATCTCTG	-			P-0025713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	66	448	0	ENST00000462284.1:c.945_1046del	p.Asn315_Glu349delinsLys	p.N315_E349delinsK	ENST00000462284	NM_002392.5	315	aATGAAATGAATCCCCCCCTTCCATCACATTGCAACAGATGTTGGGCCCTTCGTGAGAATTGGCTTCCTGAAGATAAAGGGAAAGATAAAGGGGAAATCTCTGag/aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0025714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	348	569	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1221320	1221320	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	309	564	0	ENST00000326873.7:c.843delG	p.Leu282SerfsTer5	p.L282Sfs*5	ENST00000326873	NM_000455.4	281	ccG/cc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713427	40713427	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752787425		P-0025714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	326	599	0	ENST00000373198.4:c.4088G>A	p.Arg1363Gln	p.R1363Q	ENST00000373198	NM_133170.3	1363	cGg/cAg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77051698	77051698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	295	407	0	ENST00000356341.3:c.1109G>T	p.Cys370Phe	p.C370F	ENST00000356341	NM_002576.4	370	tGc/tTc																																																																															
RET	5979	MSKCC	GRCh37	10	43615551	43615551	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	171	456	0	ENST00000355710.3:c.2630C>G	p.Ala877Gly	p.A877G	ENST00000355710	NM_020975.4	877	gCc/gGc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572260	64572260	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200035619		P-0025714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	190	341	1	ENST00000337652.1:c.1394G>A	p.Arg465Gln	p.R465Q	ENST00000337652	NM_130803.2	465	cGa/cAa																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42842598	42842598	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	212	568	1	ENST00000398585.3:c.1259G>T	p.Gly420Val	p.G420V	ENST00000398585	NM_001135099.1	420	gGg/gTg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5077461	5077461	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	200	447	0	ENST00000381652.3:c.1873G>T	p.Val625Phe	p.V625F	ENST00000381652	NM_004972.3	625	Gtt/Ttt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56363603	56363603	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0025714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	101	262	0	ENST00000348428.3:c.382A>T	p.Lys128Ter	p.K128*	ENST00000348428	NM_006785.3	128	Aag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914271	32914271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	51	532	1	ENST00000380152.3:c.5779G>A	p.Glu1927Lys	p.E1927K	ENST00000380152		1927	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178947865	178947865	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587776932		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	84	424	3	ENST00000263967.3:c.2740G>A	p.Gly914Arg	p.G914R	ENST00000263967	NM_006218.2	914	Gga/Aga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	161	380	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	180	478	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112154	115112154	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	37	393	2	ENST00000257566.3:c.1586del	p.Gly529AlafsTer103	p.G529Afs*103	ENST00000257566	NM_016569.3	529	gGc/gc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	189	465	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738411	145738416	+	inframe_deletion	In_Frame_Del	DEL	GGTGCA	GGTGCA	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	35	484	0	ENST00000428558.2:c.2569_2574delTGCACC	p.Cys857_Thr858del	p.C857_T858del	ENST00000428558	NM_004260.3	857	TGCACC/-																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	32	455	2	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	126	344	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789591	3789591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	46	356	0	ENST00000262367.5:c.4268delC	p.Pro1423LeufsTer36	p.P1423Lfs*36	ENST00000262367	NM_004380.2	1423	cCt/ct																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	26	202	2	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	105	611	9	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																															
CASP8	841	MSKCC	GRCh37	2	202149728	202149728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	190	527	0	ENST00000358485.4:c.1173del	p.Ile392SerfsTer4	p.I392Sfs*4	ENST00000358485	NM_001080125.1	390	gCc/gc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	142	487	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs199469669		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	61	317	0	ENST00000374080.3:c.130G>T	p.Gly44Cys	p.G44C	ENST00000374080		44	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	104	576	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845901	156845901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	214	626	1	ENST00000524377.1:c.1531G>A	p.Val511Met	p.V511M	ENST00000524377	NM_002529.3	511	Gtg/Atg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244454	46244454	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	43	437	0	ENST00000334344.6:c.2552del	p.Pro851HisfsTer4	p.P851Hfs*4	ENST00000334344	NM_152641.2	850	Ccc/cc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	139	375	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696410	47696410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	58	604	1	ENST00000347630.2:c.413G>A	p.Arg138His	p.R138H	ENST00000347630	NM_001007230.1	138	cGt/cAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	63	457	2	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249887	110249887	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	28	324	1	ENST00000374672.4:c.788T>C	p.Val263Ala	p.V263A	ENST00000374672	NM_004235.4	263	gTg/gCg																																																																															
CBL	867	MSKCC	GRCh37	11	119142446	119142446	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	117	425	1	ENST00000264033.4:c.445C>T	p.Arg149Ter	p.R149*	ENST00000264033	NM_005188.3	149	Cga/Tga																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004238	150004239	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	139	405	0	ENST00000253339.5:c.1986dup	p.Gln663ThrfsTer5	p.Q663Tfs*5	ENST00000253339		662	-/A																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	219	575	0	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306553	41306553	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	44	449	1	ENST00000373198.4:c.1106del	p.Gly369ValfsTer28	p.G369Vfs*28	ENST00000373198	NM_133170.3	369	gGt/gt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911132	29911132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	35	477	2	ENST00000376809.5:c.431G>A	p.Gly144Asp	p.G144D	ENST00000376809	NM_002116.7	144	gGc/gAc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	271	701	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123263369	123263369	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	49	356	0	ENST00000358487.5:c.1374del	p.Met459CysfsTer23	p.M459Cfs*23	ENST00000358487	NM_000141.4	458	ccC/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	120	629	5	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	49	523	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572272	64572272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	140	340	1	ENST00000337652.1:c.1382G>A	p.Arg461His	p.R461H	ENST00000337652	NM_130803.2	461	cGc/cAc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910804	29910804	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	43	414	0	ENST00000376809.5:c.343+1G>A		p.X115_splice	ENST00000376809	NM_002116.7	115																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5212248	5212248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	113	395	2	ENST00000357368.4:c.4783C>T	p.Arg1595Cys	p.R1595C	ENST00000357368	NM_002850.3	1595	Cgc/Tgc																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599271	28599272	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	64	694	0	ENST00000253063.3:c.721_722del	p.Pro241LysfsTer12	p.P241Kfs*12	ENST00000253063	NM_031459.4	239	agCCcc/agcc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138911	64138911	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	99	302	0	ENST00000334205.4:c.2281del	p.Ala761ProfsTer23	p.A761Pfs*23	ENST00000334205	NM_003942.2	760	Ggg/gg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420063	49420063	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201628357		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	197	474	1	ENST00000301067.7:c.15686G>A	p.Arg5229His	p.R5229H	ENST00000301067	NM_003482.3	5229	cGc/cAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109941	115109941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	54	402	0	ENST00000257566.3:c.1937C>A	p.Pro646Gln	p.P646Q	ENST00000257566	NM_016569.3	646	cCg/cAg																																																																															
YES1	7525	MSKCC	GRCh37	18	724485	724485	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	126	444	0	ENST00000314574.4:c.1571C>A	p.Ser524Tyr	p.S524Y	ENST00000314574	NM_005433.3	524	tCc/tAc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366255	15366255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	156	476	1	ENST00000263377.2:c.1900G>A	p.Val634Met	p.V634M	ENST00000263377	NM_058243.2	634	Gtg/Atg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17389832	17389832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	228	665	3	ENST00000359435.4:c.965C>T	p.Ala322Val	p.A322V	ENST00000359435	NM_001033549.1	322	gCc/gTc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803721	1803721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	194	503	0	ENST00000260795.2:c.899C>T	p.Pro300Leu	p.P300L	ENST00000260795		300	cCg/cTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55976689	55976689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	166	478	0	ENST00000263923.4:c.1136C>T	p.Ala379Val	p.A379V	ENST00000263923	NM_002253.2	379	gCg/gTg																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790905	89790905	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	161	372	0	ENST00000336032.3:c.292C>T	p.Arg98Ter	p.R98*	ENST00000336032	NM_006813.2	98	Cga/Tga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522202	157522202	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	222	483	1	ENST00000346085.5:c.4474G>T	p.Gly1492Cys	p.G1492C	ENST00000346085	NM_020732.3	1492	Ggc/Tgc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739431	145739431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	111	400	0	ENST00000428558.2:c.1939C>T	p.Arg647Cys	p.R647C	ENST00000428558	NM_004260.3	647	Cgc/Tgc																																																																															
JUN	3725	MSKCC	GRCh37	1	59248100	59248100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	29	125	0	ENST00000371222.2:c.643A>G	p.Met215Val	p.M215V	ENST00000371222	NM_002228.3	215	Atg/Gtg																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67198878	67198878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	81	483	1	ENST00000312629.5:c.349C>T	p.Arg117Trp	p.R117W	ENST00000312629	NM_003952.2	117	Cgg/Tgg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244292	46244292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	51	388	1	ENST00000334344.6:c.2386G>A	p.Val796Ile	p.V796I	ENST00000334344	NM_152641.2	796	Gtc/Atc																																																																															
POLE	5426	MSKCC	GRCh37	12	133257810	133257810	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	70	504	0	ENST00000320574.5:c.118T>A	p.Trp40Arg	p.W40R	ENST00000320574	NM_006231.2	40	Tgg/Agg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041478	14041478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	107	321	0	ENST00000311895.7:c.2025G>T	p.Gln675His	p.Q675H	ENST00000311895	NM_005236.2	675	caG/caT																																																																															
NF1	4763	MSKCC	GRCh37	17	29563005	29563005	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	79	517	0	ENST00000358273.4:c.3940T>G	p.Trp1314Gly	p.W1314G	ENST00000358273	NM_001042492.2	1314	Tgg/Ggg																																																																															
RARA	5914	MSKCC	GRCh37	17	38487619	38487619	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	50	552	0	ENST00000254066.5:c.149T>A	p.Val50Asp	p.V50D	ENST00000254066	NM_000964.3	50	gTt/gAt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211110	2211110	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	60	570	0	ENST00000398665.3:c.1367del	p.Pro456LeufsTer33	p.P456Lfs*33	ENST00000398665	NM_032482.2	455	tCc/tc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244163	5244163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	43	443	1	ENST00000357368.4:c.1319C>T	p.Ala440Val	p.A440V	ENST00000357368	NM_002850.3	440	gCg/gTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10250352	10250352	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	23	266	0	ENST00000340748.4:c.3900G>T	p.Gln1300His	p.Q1300H	ENST00000340748		1300	caG/caT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214870	36214870	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs200663900		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	77	644	2	ENST00000222270.7:c.3296G>C	p.Gly1099Ala	p.G1099A	ENST00000222270	NM_014727.1	1099	gGc/gCc																																																																															
CIC	23152	MSKCC	GRCh37	19	42794869	42794869	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	108	371	0	ENST00000575354.2:c.1953delC	p.Ala652ProfsTer76	p.A652Pfs*76	ENST00000575354	NM_015125.3	650	gCc/gc																																																																															
CIC	23152	MSKCC	GRCh37	19	42798172	42798172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	62	551	0	ENST00000575354.2:c.4126C>A	p.Leu1376Met	p.L1376M	ENST00000575354	NM_015125.3	1376	Ctg/Atg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212522479	212522479	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	73	401	0	ENST00000342788.4:c.1946G>T	p.Arg649Ile	p.R649I	ENST00000342788	NM_005235.2	649	aGa/aTa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610572	52610573	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	96	460	0	ENST00000394830.3:c.3600dup	p.Met1201HisfsTer23	p.M1201Hfs*23	ENST00000394830	NM_018313.4	1200	-/C																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52677263	52677263	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	73	486	2	ENST00000394830.3:c.995+1G>A		p.X332_splice	ENST00000394830	NM_018313.4	332																																																																																
BCL6	604	MSKCC	GRCh37	3	187444666	187444666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	169	295	0	ENST00000232014.4:c.1561A>G	p.Asn521Asp	p.N521D	ENST00000232014	NM_001130845.1	521	Aat/Gat																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753180	57753180	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	87	261	0	ENST00000274289.3:c.836del	p.Pro279HisfsTer14	p.P279Hfs*14	ENST00000274289	NM_006622.3	279	cCa/ca																																																																															
MSH3	4437	MSKCC	GRCh37	5	80074634	80074634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	59	432	0	ENST00000265081.6:c.2414C>A	p.Ala805Asp	p.A805D	ENST00000265081	NM_002439.4	805	gCt/gAt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912176	29912176	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	15	135	0	ENST00000376809.5:c.895+2T>C		p.X299_splice	ENST00000376809	NM_002116.7	299																																																																																
RECQL4	9401	MSKCC	GRCh37	8	145741415	145741415	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	81	633	0	ENST00000428558.2:c.1088A>G	p.Tyr363Cys	p.Y363C	ENST00000428558	NM_004260.3	363	tAc/tGc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135798769	135798769	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	72	382	2	ENST00000298552.3:c.474del	p.Phe158LeufsTer9	p.F158Lfs*9	ENST00000298552	NM_001162426.1	158	ttT/tt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	161	775	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	110	668	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968259	2968259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	204	716	2	ENST00000396946.4:c.1727G>A	p.Arg576His	p.R576H	ENST00000396946	NM_032415.4	576	cGc/cAc																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20152120	20152120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	87	678	0	ENST00000379607.5:c.210G>T	p.Trp70Cys	p.W70C	ENST00000379607	NM_001412.3	70	tgG/tgT																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149505026	149505026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	53	442	0	ENST00000261799.4:c.1789C>T	p.Arg597Trp	p.R597W	ENST00000261799	NM_002609.3	597	Cgg/Tgg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366149	15366149	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35824241		P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	65	625	0	ENST00000263377.2:c.2006G>A	p.Arg669His	p.R669H	ENST00000263377	NM_058243.2	669	cGc/cAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29483016	29483016	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	57	588	0	ENST00000358273.4:c.76G>T	p.Gly26Ter	p.G26*	ENST00000358273	NM_001042492.2	26	Gga/Tga																																																																															
POLE	5426	MSKCC	GRCh37	12	133209302	133209302	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	129	792	0	ENST00000320574.5:c.6084G>T	p.Arg2028Ser	p.R2028S	ENST00000320574	NM_006231.2	2028	agG/agT																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740683	58740683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	237	738	0	ENST00000305921.3:c.1588C>T	p.Pro530Ser	p.P530S	ENST00000305921	NM_003620.3	530	Cct/Tct																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89456461	89456461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	105	507	0	ENST00000336596.2:c.1637C>A	p.Ala546Asp	p.A546D	ENST00000336596	NM_005233.5	546	gCc/gAc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729438	41729438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	131	588	0	ENST00000242208.4:c.1091C>A	p.Ser364Tyr	p.S364Y	ENST00000242208	NM_002192.2	364	tCc/tAc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998186	100998186	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	63	431	0	ENST00000325455.5:c.1616C>A	p.Pro539Gln	p.P539Q	ENST00000325455	NM_001202474.3	539	cCg/cAg																																																																															
YAP1	10413	MSKCC	GRCh37	11	102100563	102100563	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	104	652	0	ENST00000282441.5:c.1407G>T	p.Glu469Asp	p.E469D	ENST00000282441	NM_001130145.2	469	gaG/gaT																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482591	56482591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	119	803	0	ENST00000267101.3:c.1048G>A	p.Gly350Arg	p.G350R	ENST00000267101	NM_001982.3	350	Gga/Aga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120782	115120782	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	56	525	0	ENST00000257566.3:c.224G>T	p.Gly75Val	p.G75V	ENST00000257566	NM_016569.3	75	gGc/gTc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518630	103518630	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	93	368	0	ENST00000355739.4:c.2218G>C	p.Glu740Gln	p.E740Q	ENST00000355739	NM_000123.3	740	Gag/Cag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347734	347734	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	66	630	0	ENST00000262320.3:c.1772G>T	p.Gly591Val	p.G591V	ENST00000262320	NM_003502.3	591	gGc/gTc																																																																															
RARA	5914	MSKCC	GRCh37	17	38512334	38512334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	113	589	0	ENST00000254066.5:c.1245G>T	p.Glu415Asp	p.E415D	ENST00000254066	NM_000964.3	415	gaG/gaT																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182665410	182665410	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	59	481	0	ENST00000292782.4:c.531G>T	p.Met177Ile	p.M177I	ENST00000292782	NM_020640.2	177	atG/atT																																																																															
PARK2	5071	MSKCC	GRCh37	6	162622278	162622278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	82	457	2	ENST00000366898.1:c.419G>T	p.Arg140Ile	p.R140I	ENST00000366898	NM_004562.2	140	aGa/aTa																																																																															
HGF	3082	MSKCC	GRCh37	7	81346600	81346600	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	78	487	2	ENST00000222390.5:c.1353G>T	p.Trp451Cys	p.W451C	ENST00000222390	NM_000601.4	451	tgG/tgT																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98242251	98242251	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	99	577	0	ENST00000331920.6:c.1067G>C	p.Ser356Thr	p.S356T	ENST00000331920	NM_000264.3	356	aGc/aCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	322	564	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743881	40743881	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	166	709	0	ENST00000373198.4:c.3114G>T	p.Glu1038Asp	p.E1038D	ENST00000373198	NM_133170.3	1038	gaG/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0025721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	180	667	3	ENST00000269305.4:c.920-1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
DOT1L	84444	MSKCC	GRCh37	19	2191101	2191101	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	273	728	1	ENST00000398665.3:c.355G>T	p.Val119Leu	p.V119L	ENST00000398665	NM_032482.2	119	Gtg/Ttg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71037162	71037162	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	150	462	0	ENST00000318789.4:c.1129A>G	p.Lys377Glu	p.K377E	ENST00000318789	NM_032682.5	377	Aaa/Gaa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28636003	28636004	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0025721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	84	657	1	ENST00000241453.7:c.368_368+1delinsTT		p.X123_splice	ENST00000241453	NM_004119.2	123																																																																																
B2M	567	MSKCC	GRCh37	15	45003794	45003794	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	60	496	0	ENST00000558401.1:c.50G>T	p.Gly17Val	p.G17V	ENST00000558401	NM_004048.2	17	gGc/gTc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561324	9561324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	58	435	1	ENST00000353224.5:c.458G>T	p.Gly153Val	p.G153V	ENST00000353224	NM_177990.2	153	gGa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	135	675	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CCND2	894	MSKCC	GRCh37	12	4409152	4409152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	60	615	0	ENST00000261254.3:c.847G>T	p.Asp283Tyr	p.D283Y	ENST00000261254	NM_001759.3	283	Gac/Tac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045172	47045172	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	91	796	0	ENST00000329236.7:c.2179G>T	p.Glu727Ter	p.E727*	ENST00000329236	NM_001204466.1	727	Gag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89456470	89456470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	55	535	2	ENST00000336596.2:c.1646C>A	p.Ala549Glu	p.A549E	ENST00000336596	NM_005233.5	549	gCg/gAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	63	571	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0025757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	115	482	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
CARM1	10498	MSKCC	GRCh37	19	11019828	11019828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	91	449	1	ENST00000327064.4:c.503G>A	p.Arg168Gln	p.R168Q	ENST00000327064	NM_199141.1	168	cGg/cAg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	88	590	0	ENST00000347630.2:c.392G>C	p.Trp131Ser	p.W131S	ENST00000347630	NM_001007230.1	131	tGg/tCg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024102	31024102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	66	569	0	ENST00000375687.4:c.3587C>T	p.Ala1196Val	p.A1196V	ENST00000375687	NM_015338.5	1196	gCt/gTt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0025788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	152	396	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0025788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	115	144	1	ENST00000412916.2:c.165+1G>T		p.X55_splice	ENST00000412916		55																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11144152	11144152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	232	493	0	ENST00000344626.4:c.3733G>A	p.Ala1245Thr	p.A1245T	ENST00000344626	NM_003072.3	1245	Gcc/Acc																																																																															
EP300	2033	MSKCC	GRCh37	22	41562652	41562653	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0025793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	255	328	1	ENST00000263253.7:c.3858_3859dup	p.Lys1287IlefsTer17	p.K1287Ifs*17	ENST00000263253	NM_001429.3	1286	aat/aATat																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	150	444	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	199	633	0	ENST00000269305.4:c.733G>C	p.Gly245Arg	p.G245R	ENST00000269305	NM_001126112.2	245	Ggc/Cgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	39	580	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MAX	4149	MSKCC	GRCh37	14	65544642	65544642	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	40	486	0	ENST00000358664.4:c.284T>C	p.Leu95Pro	p.L95P	ENST00000358664	NM_002382.4	95	cTg/cCg																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			639	323	777	0	ENST00000311189.7:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000311189		61	cAg/cTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831354	72831354	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			260	190	328	0	ENST00000268489.5:c.5227C>T	p.Gln1743Ter	p.Q1743*	ENST00000268489	NM_006885.3	1743	Caa/Taa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348214	348214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	52	708	0	ENST00000262320.3:c.1292C>T	p.Pro431Leu	p.P431L	ENST00000262320	NM_003502.3	431	cCc/cTc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589519	69589519	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	17	165	0	ENST00000168712.1:c.334C>G	p.Arg112Gly	p.R112G	ENST00000168712	NM_002007.2	112	Cgc/Ggc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	363	485	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936096	178936096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	348	638	0	ENST00000263967.3:c.1638G>C	p.Gln546His	p.Q546H	ENST00000263967	NM_006218.2	546	caG/caC																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	120	451	0	ENST00000250448.2:c.781C>A	p.Arg261Ser	p.R261S	ENST00000250448	NM_004496.3	261	Cgc/Agc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49280981	49280981	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201474852		P-0025528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	192	655	0	ENST00000282018.3:c.28C>A	p.Pro10Thr	p.P10T	ENST00000282018	NM_020377.2	10	Cca/Aca																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267383	198267383	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	145	610	3	ENST00000335508.6:c.1974G>T	p.Trp658Cys	p.W658C	ENST00000335508	NM_012433.2	658	tgG/tgT																																																																															
PMS2	5395	MSKCC	GRCh37	7	6038902	6038902	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	131	472	0	ENST00000265849.7:c.542A>T	p.Tyr181Phe	p.Y181F	ENST00000265849	NM_000535.5	181	tAt/tTt																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2491274	2491274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	24	400	0	ENST00000355716.4:c.317G>A	p.Arg106His	p.R106H	ENST00000355716	NM_003820.2	106	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	15	454	0	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913294		P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	26	458	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123260369	123260369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	45	514	0	ENST00000358487.5:c.1532C>T	p.Ala511Val	p.A511V	ENST00000358487	NM_000141.4	511	gCg/gTg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741486	17741486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	19	321	0	ENST00000250003.3:c.157G>A	p.Val53Met	p.V53M	ENST00000250003	NM_002478.4	53	Gtg/Atg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18691191	18691191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	25	392	2	ENST00000266497.5:c.3302G>A	p.Arg1101His	p.R1101H	ENST00000266497		1101	cGt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444349	49444349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	27	476	0	ENST00000301067.7:c.3022C>A	p.Pro1008Thr	p.P1008T	ENST00000301067	NM_003482.3	1008	Cca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444960	49444960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	20	290	1	ENST00000301067.7:c.2506del	p.Gln836SerfsTer94	p.Q836Sfs*94	ENST00000301067	NM_003482.3	836	Cag/ag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	38	472	2	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	37	502	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712845	43712845	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	31	532	0	ENST00000382044.4:c.4339del	p.Arg1447GlufsTer36	p.R1447Efs*36	ENST00000382044	NM_001141980.1	1447	Cga/ga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2112983	2112983	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	22	311	1	ENST00000219476.3:c.1372C>T	p.Arg458Ter	p.R458*	ENST00000219476	NM_000548.3	458	Cga/Tga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136784	2136784	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201694466		P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	47	530	0	ENST00000219476.3:c.4901G>A	p.Arg1634His	p.R1634H	ENST00000219476	NM_000548.3	1634	cGc/cAc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647400	3647400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	21	404	0	ENST00000294008.3:c.1663G>A	p.Val555Met	p.V555M	ENST00000294008	NM_032444.2	555	Gtg/Atg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820602	3820602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	28	434	1	ENST00000262367.5:c.2849C>T	p.Thr950Met	p.T950M	ENST00000262367	NM_004380.2	950	aCg/aTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89357108	89357108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	27	486	0	ENST00000301030.4:c.526G>A	p.Ala176Thr	p.A176T	ENST00000301030	NM_001256183.1	176	Gcc/Acc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40474338	40474338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	30	418	0	ENST00000264657.5:c.2063G>A	p.Arg688Gln	p.R688Q	ENST00000264657	NM_139276.2	688	cGg/cAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	38	435	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440757	56440757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	19	333	0	ENST00000407977.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000407977		154	cCg/cTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	44	408	0	ENST00000407977.2:c.349delC	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11168962	11168962	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	23	357	0	ENST00000344626.4:c.4456A>G	p.Ile1486Val	p.I1486V	ENST00000344626	NM_003072.3	1486	Atc/Gtc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216507	36216507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	29	507	1	ENST00000222270.7:c.3770G>A	p.Arg1257His	p.R1257H	ENST00000222270	NM_014727.1	1257	cGc/cAc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753629	42753629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	36	361	0	ENST00000222329.4:c.635C>T	p.Pro212Leu	p.P212L	ENST00000222329	NM_006494.2	212	cCg/cTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42799098	42799098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	34	425	0	ENST00000575354.2:c.4586delC	p.Pro1529LeufsTer91	p.P1529Lfs*91	ENST00000575354	NM_015125.3	1528	Ccc/cc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918799	50918799	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146344351		P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	23	423	0	ENST00000440232.2:c.2669C>T	p.Ala890Val	p.A890V	ENST00000440232	NM_002691.3	890	gCg/gTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919914	50919914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	23	342	0	ENST00000440232.2:c.3001G>A	p.Gly1001Ser	p.G1001S	ENST00000440232	NM_002691.3	1001	Ggc/Agc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25497907	25497907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	21	361	1	ENST00000264709.3:c.542G>A	p.Arg181His	p.R181H	ENST00000264709	NM_175629.2	181	cGt/cAt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	53	455	6	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
INHA	3623	MSKCC	GRCh37	2	220439668	220439668	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs192760521		P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	20	409	0	ENST00000243786.2:c.521C>A	p.Pro174His	p.P174H	ENST00000243786	NM_002191.3	174	cCt/cAt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662461	227662461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	26	335	0	ENST00000305123.5:c.994G>A	p.Gly332Ser	p.G332S	ENST00000305123	NM_005544.2	332	Ggc/Agc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023474	31023474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	27	371	0	ENST00000375687.4:c.2959G>A	p.Gly987Arg	p.G987R	ENST00000375687	NM_015338.5	987	Gga/Aga																																																																															
SRC	6714	MSKCC	GRCh37	20	36012698	36012698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	15	39	0	ENST00000358208.4:c.142C>T	p.Arg48Cys	p.R48C	ENST00000358208		48	Cgc/Tgc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62292757	62292757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	31	417	0	ENST00000508582.2:c.209G>A	p.Arg70His	p.R70H	ENST00000508582		70	cGc/cAc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62321791	62321791	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	17	282	0	ENST00000508582.2:c.2482T>C	p.Ser828Pro	p.S828P	ENST00000508582		828	Tca/Cca																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655225	45655225	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	40	382	0	ENST00000407780.3:c.627del	p.Ser210AlafsTer2	p.S210Afs*2	ENST00000407780	NM_001283052.1	209	ccC/cc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934985	49934985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	29	440	1	ENST00000296474.3:c.2014G>A	p.Gly672Ser	p.G672S	ENST00000296474	NM_002447.2	672	Ggc/Agc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940582	49940582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	25	323	1	ENST00000296474.3:c.461C>T	p.Ala154Val	p.A154V	ENST00000296474	NM_002447.2	154	gCc/gTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	17	326	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541247	187541247	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	24	394	0	ENST00000441802.2:c.6493del	p.Ser2165GlnfsTer11	p.S2165Qfs*11	ENST00000441802	NM_005245.3	2165	Tca/ca																																																																															
APC	324	MSKCC	GRCh37	5	112111327	112111327	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	12	181	0	ENST00000257430.4:c.424T>C	p.Ser142Pro	p.S142P	ENST00000257430	NM_000038.5	142	Tca/Cca																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100302	157100302	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	13	153	0	ENST00000346085.5:c.1243delG	p.Ala415ProfsTer15	p.A415Pfs*15	ENST00000346085	NM_020732.3	413	tcG/tc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162867	38162867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	35	468	0	ENST00000317025.8:c.2339G>A	p.Arg780His	p.R780H	ENST00000317025	NM_023034.1	780	cGc/cAc																																																																															
TEK	7010	MSKCC	GRCh37	9	27203069	27203069	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	39	529	0	ENST00000380036.4:c.2161A>C	p.Ser721Arg	p.S721R	ENST00000380036	NM_000459.3	721	Agc/Cgc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209357	98209357	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748812637		P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	21	360	0	ENST00000331920.6:c.4181G>A	p.Arg1394Gln	p.R1394Q	ENST00000331920	NM_000264.3	1394	cGa/cAa																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128268684	128268684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	27	459	0	ENST00000265960.3:c.971G>A	p.Arg324His	p.R324H	ENST00000265960	NM_001006617.1	324	cGc/cAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933613	39933613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	23	363	0	ENST00000378444.4:c.986C>T	p.Thr329Ile	p.T329I	ENST00000378444	NM_001123385.1	329	aCa/aTa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934031	39934031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	36	451	1	ENST00000378444.4:c.568C>T	p.Pro190Ser	p.P190S	ENST00000378444	NM_001123385.1	190	Ccc/Tcc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0025534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	122	417	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0025534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	126	496	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581272	48581273	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0025534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	327	525	0	ENST00000342988.3:c.579_580del	p.Glu193AspfsTer12	p.E193Dfs*12	ENST00000342988	NM_005359.5	192	acAGag/acag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438298	110438298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	52	159	0	ENST00000375856.3:c.103G>A	p.Gly35Ser	p.G35S	ENST00000375856	NM_003749.2	35	Ggc/Agc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0025636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	181	564	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	199	537	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																																																															
CDH1	999	MSKCC	GRCh37	16	68855984	68855984	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	233	535	1	ENST00000261769.5:c.1792C>T	p.Arg598Ter	p.R598*	ENST00000261769	NM_004360.3	598	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089676	27089676	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	231	536	1	ENST00000324856.7:c.2632C>T	p.Gln878Ter	p.Q878*	ENST00000324856	NM_006015.4	878	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602620	10602620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	235	412	0	ENST00000171111.5:c.958C>T	p.Arg320Trp	p.R320W	ENST00000171111	NM_203500.1	320	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112173600	112173600	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0025637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	171	229	0	ENST00000257430.4:c.2309C>G	p.Ser770Ter	p.S770*	ENST00000257430	NM_000038.5	770	tCa/tGa																																																																															
POLE	5426	MSKCC	GRCh37	12	133226046	133226046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	272	432	0	ENST00000320574.5:c.3851G>T	p.Arg1284Leu	p.R1284L	ENST00000320574	NM_006231.2	1284	cGg/cTg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81562982	81562982	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0025637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	209	346	0	ENST00000298171.2:c.546-1G>A		p.X182_splice	ENST00000298171	NM_000369.2	182																																																																																
STK11	6794	MSKCC	GRCh37	19	1220612	1220612	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	185	374	2	ENST00000326873.7:c.630C>A	p.Cys210Ter	p.C210*	ENST00000326873	NM_000455.4	210	tgC/tgA																																																																															
LATS1	9113	MSKCC	GRCh37	6	149982926	149982926	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	245	399	1	ENST00000253339.5:c.3332C>A	p.Ser1111Ter	p.S1111*	ENST00000253339		1111	tCg/tAg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099805	157099805	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	166	205	1	ENST00000346085.5:c.742G>T	p.Ala248Ser	p.A248S	ENST00000346085	NM_020732.3	248	Gct/Tct																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039904	47039904	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0025637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	251	235	0	ENST00000329236.7:c.1013A>G	p.Gln338Arg	p.Q338R	ENST00000329236	NM_001204466.1	338	cAg/cGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	59	411	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	195	463	0	ENST00000269305.4:c.434T>C	p.Leu145Pro	p.L145P	ENST00000269305	NM_001126112.2	145	cTg/cCg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610154	10610154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	116	482	0	ENST00000171111.5:c.556G>T	p.Gly186Cys	p.G186C	ENST00000171111	NM_203500.1	186	Ggc/Tgc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59770854	59770854	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	54	329	0	ENST00000259008.2:c.2512G>C	p.Asp838His	p.D838H	ENST00000259008	NM_032043.2	838	Gat/Cat																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58725410	58725410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	101	438	0	ENST00000305921.3:c.984G>A	p.Met328Ile	p.M328I	ENST00000305921	NM_003620.3	328	atG/atA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717609	89717609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	51	262	0	ENST00000371953.3:c.635-1G>C		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																																
CD79A	973	MSKCC	GRCh37	19	42383185	42383185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	89	436	2	ENST00000221972.3:c.205G>A	p.Val69Ile	p.V69I	ENST00000221972	NM_021601.3	69	Gtc/Atc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18974258	18974258	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	58	335	0	ENST00000262803.5:c.2612T>A	p.Ile871Asn	p.I871N	ENST00000262803	NM_002911.3	871	aTc/aAc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308378	30308378	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	75	460	0	ENST00000262643.3:c.392A>G	p.Gln131Arg	p.Q131R	ENST00000262643	NM_001238.2	131	cAg/cGg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212578259	212578259	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	58	351	0	ENST00000342788.4:c.997+1G>T		p.X333_splice	ENST00000342788	NM_005235.2	333																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31019156	31019156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	81	367	0	ENST00000375687.4:c.751G>A	p.Asp251Asn	p.D251N	ENST00000375687	NM_015338.5	251	Gat/Aat																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285908	38285908	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	62	371	0	ENST00000425967.3:c.503C>G	p.Ser168Cys	p.S168C	ENST00000425967	NM_001174067.1	168	tCt/tGt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391869	139391869	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	62	392	0	ENST00000277541.6:c.6322G>T	p.Asp2108Tyr	p.D2108Y	ENST00000277541	NM_017617.3	2108	Gac/Tac																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508977	106508977	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	79	243	0	ENST00000359195.3:c.971C>A	p.Pro324Gln	p.P324Q	ENST00000359195	NM_002649.2	324	cCa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0025640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	222	643	3	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244139	46244139	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	30	395	1	ENST00000334344.6:c.2233C>T	p.Gln745Ter	p.Q745*	ENST00000334344	NM_152641.2	745	Cag/Tag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396541	30396541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	17	471	0	ENST00000331968.5:c.178G>A	p.Glu60Lys	p.E60K	ENST00000331968	NM_002742.2	60	Gag/Aag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857727	9857727	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0025640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	31	404	0	ENST00000330684.3:c.3674C>G	p.Ser1225Ter	p.S1225*	ENST00000330684	NM_001134407.1	1225	tCa/tGa																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40462677	40462677	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	26	435	0	ENST00000345506.4:c.2375C>A	p.Ser792Tyr	p.S792Y	ENST00000345506	NM_003152.3	792	tCc/tAc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906777	50906777	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	50	729	0	ENST00000440232.2:c.1165G>T	p.Asp389Tyr	p.D389Y	ENST00000440232	NM_002691.3	389	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0025641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	500	603	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0025641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	169	234	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149290773	149290774	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	112	398	0	ENST00000360632.3:c.445dup	p.Ile149AsnfsTer8	p.I149Nfs*8	ENST00000360632	NM_015472.4	149	atc/aAtc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285537	38285537	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	79	539	0	ENST00000425967.3:c.616A>C	p.Lys206Gln	p.K206Q	ENST00000425967	NM_001174067.1	206	Aag/Cag																																																																															
MYC	4609	MSKCC	GRCh37	8	128750768	128750768	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1383	236	439	0	ENST00000377970.2:c.305A>G	p.Asp102Gly	p.D102G	ENST00000377970	NM_002467.4	102	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0025642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	30	593	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0025642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	287	760	1	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																															
RB1	5925	MSKCC	GRCh37	13	49033934	49033934	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	32	515	1	ENST00000267163.4:c.2071G>T	p.Glu691Ter	p.E691*	ENST00000267163	NM_000321.2	691	Gag/Tag																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944863	131944863	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	35	332	0	ENST00000265335.6:c.2884G>C	p.Glu962Gln	p.E962Q	ENST00000265335		962	Gag/Cag																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62293900	62293900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	48	823	0	ENST00000508582.2:c.469C>T	p.Pro157Ser	p.P157S	ENST00000508582		157	Cct/Tct																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045464	47045464	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0025642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	31	506	0	ENST00000329236.7:c.2197C>T	p.Gln733Ter	p.Q733*	ENST00000329236	NM_001204466.1	733	Caa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	20	246	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0025643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	108	301	1	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																															
RB1	5925	MSKCC	GRCh37	13	49047507	49047507	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	335	495	0	ENST00000267163.4:c.2501C>A	p.Ser834Ter	p.S834*	ENST00000267163	NM_000321.2	834	tCa/tAa																																																																															
MAX	4149	MSKCC	GRCh37	14	65560468	65560468	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	413	543	0	ENST00000358664.4:c.129del	p.His44ThrfsTer21	p.H44Tfs*21	ENST00000358664	NM_002382.4	43	ttT/tt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341195	8341195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	341	539	1	ENST00000356435.5:c.5021G>A	p.Arg1674His	p.R1674H	ENST00000356435		1674	cGc/cAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100784	8100784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	105	595	0	ENST00000346208.3:c.758C>A	p.Pro253His	p.P253H	ENST00000346208		253	cCc/cAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118836	115118836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	50	480	1	ENST00000257566.3:c.505C>T	p.Arg169Trp	p.R169W	ENST00000257566	NM_016569.3	169	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	116	639	0	ENST00000269305.4:c.313G>C	p.Gly105Arg	p.G105R	ENST00000269305	NM_001126112.2	105	Ggc/Cgc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1952899	1952899	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	118	501	0	ENST00000382891.5:c.1982G>T	p.Gly661Val	p.G661V	ENST00000382891	NM_133335.3	661	gGa/gTa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38148195	38148195	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0025651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	79	409	0	ENST00000317025.8:c.2916A>T	p.Arg972Ser	p.R972S	ENST00000317025	NM_023034.1	972	agA/agT																																																																															
PREX2	80243	MSKCC	GRCh37	8	68995601	68995601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	142	583	0	ENST00000288368.4:c.2005C>T	p.Leu669Phe	p.L669F	ENST00000288368	NM_024870.2	669	Ctt/Ttt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970966	21970967	+	missense_variant	Missense_Mutation	DNP	CG	CG	AT			P-0025651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	128	466	2	ENST00000304494.5:c.391_392delinsAT	p.Arg131Ile	p.R131I	ENST00000304494	NM_000077.4	131	CGc/ATc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971026	21971026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	107	316	0	ENST00000304494.5:c.332G>T	p.Gly111Val	p.G111V	ENST00000304494	NM_000077.4	111	gGc/gTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0025652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	146	591	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0025652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	79	686	2	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185165701	185165701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	56	471	1	ENST00000265026.3:c.976C>T	p.Arg326Trp	p.R326W	ENST00000265026	NM_004721.4	326	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256326	16256326	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	108	645	0	ENST00000375759.3:c.3591A>T	p.Lys1197Asn	p.K1197N	ENST00000375759	NM_015001.2	1197	aaA/aaT																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125462	47125462	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	30	484	0	ENST00000409792.3:c.5808C>A	p.Cys1936Ter	p.C1936*	ENST00000409792	NM_014159.6	1936	tgC/tgA																																																																															
ETV1	2115	MSKCC	GRCh37	7	14028634	14028634	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0025652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	127	564	0	ENST00000405192.2:c.44A>G	p.Asn15Ser	p.N15S	ENST00000405192	NM_001163147.1	15	aAt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0025674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	24	525	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242474	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGA	GAATTAAGA	-			P-0025674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	134	598	0	ENST00000275493.2:c.2239_2247delTTAAGAGAA	p.Leu747_Glu749del	p.L747_E749del	ENST00000275493	NM_005228.3	746	GAATTAAGA/-																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175843	176175843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	109	151	0	ENST00000367669.3:c.272G>A	p.Cys91Tyr	p.C91Y	ENST00000367669	NM_022457.5	91	tGc/tAc																																																																															
ATM	472	MSKCC	GRCh37	11	108196131	108196143	+	frameshift_variant	Frame_Shift_Del	DEL	ATCATGGCTCTAC	ATCATGGCTCTAC	-			P-0025674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	81	606	0	ENST00000278616.4:c.6667_6679del	p.Ile2223AlafsTer8	p.I2223Afs*8	ENST00000278616	NM_000051.3	2223	ATCATGGCTCTACgc/gc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029494	14029494	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	42	443	0	ENST00000311895.7:c.1705G>T	p.Val569Leu	p.V569L	ENST00000311895	NM_005236.2	569	Gta/Tta																																																																															
SETD2	29072	MSKCC	GRCh37	3	47079255	47079255	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	68	554	0	ENST00000409792.3:c.7251G>A	p.Trp2417Ter	p.W2417*	ENST00000409792	NM_014159.6	2417	tgG/tgA																																																																															
SETD2	29072	MSKCC	GRCh37	3	47205375	47205375	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	17	330	0	ENST00000409792.3:c.40G>T	p.Asp14Tyr	p.D14Y	ENST00000409792	NM_014159.6	14	Gat/Tat																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196170	138196170	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs587778710		P-0025676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	82	219	0	ENST00000237289.4:c.484C>T	p.Arg162Trp	p.R162W	ENST00000237289	NM_001270507.1	162	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108122563	108122563	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0025676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	302	272	0	ENST00000278616.4:c.1608-1G>C		p.X536_splice	ENST00000278616	NM_000051.3	536																																																																																
RPTOR	57521	MSKCC	GRCh37	17	78896549	78896549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	177	426	0	ENST00000306801.3:c.2546G>A	p.Arg849His	p.R849H	ENST00000306801	NM_020761.2	849	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821176	72821176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	37	697	0	ENST00000268489.5:c.10999G>A	p.Asp3667Asn	p.D3667N	ENST00000268489	NM_006885.3	3667	Gat/Aat																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0025682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	28	425	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55269020	55269020	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182857647		P-0025682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	11	391	0	ENST00000275493.2:c.3086C>T	p.Thr1029Met	p.T1029M	ENST00000275493	NM_005228.3	1029	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175772	112175772	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	154	340	0	ENST00000257430.4:c.4483del	p.Ser1495ValfsTer12	p.S1495Vfs*12	ENST00000257430	NM_000038.5	1494	gAa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	438	795	1	ENST00000269305.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000269305	NM_001126112.2	130	Ctc/Ttc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971193	21971193	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	221	372	0	ENST00000304494.5:c.165del	p.Ser56AlafsTer90	p.S56Afs*90	ENST00000304494	NM_000077.4	55	ggC/gg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871182	12871182	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	310	236	0	ENST00000228872.4:c.410delC	p.Pro137ArgfsTer8	p.P137Rfs*8	ENST00000228872	NM_004064.3	137	Ccg/cg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660832	227660832	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	95	497	0	ENST00000305123.5:c.2623C>G	p.Arg875Gly	p.R875G	ENST00000305123	NM_005544.2	875	Cga/Gga																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40674826	40675230	+	coding_sequence_variant,5_prime_UTR_variant	In_Frame_Del	DEL	CCCTAACAATCCCAAACTAAATAAAGAGGATTGTGACATGGACCCTAAATGTCGCCACGTTTGCGTCTCCATCCCGGAATATGACGCTGGTAGCTCATTAGCTCCATTCAAGCCTACAAATTGCATCACCCTCCTCCTCTGCCCAGACCTGGGGGCTCCAACACCTTTCGCTAGGTCTGGCTCTGGCCTCTGAGCGAACCTTCCGTACAGTATGGCGGCTCCCGAAGCCCCGCCCCTGGACAGAGTTTTCCGTACAACATGGCTGTCTACAGAGTGCGATTCCCACCCACTTCCGCCTAGCTACCGGAAGTTTCTATTTGAAACCCAGGCGGCCGACTTAGCCGGTGGCACGACAGTTGCTGCAGGGAATCTTTTAAACGAGAGCGAGAAGGACTGCGGGCAGGA	CCCTAACAATCCCAAACTAAATAAAGAGGATTGTGACATGGACCCTAAATGTCGCCACGTTTGCGTCTCCATCCCGGAATATGACGCTGGTAGCTCATTAGCTCCATTCAAGCCTACAAATTGCATCACCCTCCTCCTCTGCCCAGACCTGGGGGCTCCAACACCTTTCGCTAGGTCTGGCTCTGGCCTCTGAGCGAACCTTCCGTACAGTATGGCGGCTCCCGAAGCCCCGCCCCTGGACAGAGTTTTCCGTACAACATGGCTGTCTACAGAGTGCGATTCCCACCCACTTCCGCCTAGCTACCGGAAGTTTCTATTTGAAACCCAGGCGGCCGACTTAGCCGGTGGCACGACAGTTGCTGCAGGGAATCTTTTAAACGAGAGCGAGAAGGACTGCGGGCAGGA	-			P-0025704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	11	14	0				ENST00000249776	NM_033286.3																																																																																	
PMS1	5378	MSKCC	GRCh37	2	190682863	190682863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	64	596	0	ENST00000441310.2:c.539G>A	p.Gly180Asp	p.G180D	ENST00000441310	NM_000534.4	180	gGt/gAt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873075	134873075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	154	670	0	ENST00000398015.3:c.1379C>A	p.Pro460His	p.P460H	ENST00000398015	NM_004441.4	460	cCc/cAc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170147	32170147	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	21	759	0	ENST00000375023.3:c.3461G>T	p.Gly1154Val	p.G1154V	ENST00000375023	NM_004557.3	1154	gGc/gTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878020	151878020	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	12	269	0	ENST00000262189.6:c.6925C>T	p.Gln2309Ter	p.Q2309*	ENST00000262189	NM_170606.2	2309	Cag/Tag																																																																															
HRAS	3265	MSKCC	GRCh37	11	533552	533552	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	16	782	0	ENST00000311189.7:c.351G>C	p.Lys117Asn	p.K117N	ENST00000311189		117	aaG/aaC																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44945148	44945148	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	130	285	0	ENST00000377967.4:c.3472A>T	p.Asn1158Tyr	p.N1158Y	ENST00000377967	NM_021140.2	1158	Aat/Tat																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	24	372	0	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	219	565	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1222983	1222983	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	162	380	0	ENST00000326873.7:c.921-1G>C		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																																
JAK1	3716	MSKCC	GRCh37	1	65311224	65311224	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	73	358	0	ENST00000342505.4:c.2087A>G	p.Lys696Arg	p.K696R	ENST00000342505	NM_002227.2	696	aAa/aGa																																																																															
RET	5979	MSKCC	GRCh37	10	43608300	43608300	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	108	610	0	ENST00000355710.3:c.1649-1G>C		p.X550_splice	ENST00000355710	NM_020975.4	550																																																																																
WT1	7490	MSKCC	GRCh37	11	32456271	32456271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	154	517	0	ENST00000332351.3:c.621G>T	p.Glu207Asp	p.E207D	ENST00000332351	NM_024426.4	207	gaG/gaT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427026	49427026	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	141	398	0	ENST00000301067.7:c.11462A>T	p.Gln3821Leu	p.Q3821L	ENST00000301067	NM_003482.3	3821	cAg/cTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427395	49427395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	205	575	2	ENST00000301067.7:c.11093G>A	p.Gly3698Asp	p.G3698D	ENST00000301067	NM_003482.3	3698	gGc/gAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906702	32906702	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	119	428	0	ENST00000380152.3:c.1087A>G	p.Thr363Ala	p.T363A	ENST00000380152		363	Act/Gct																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500637	99500637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	115	320	0	ENST00000268035.6:c.4070G>T	p.Arg1357Leu	p.R1357L	ENST00000268035	NM_000875.3	1357	cGg/cTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212257	5212257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	163	415	0	ENST00000357368.4:c.4774G>T	p.Gly1592Cys	p.G1592C	ENST00000357368	NM_002850.3	1592	Ggt/Tgt																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47606972	47606972	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	188	404	0	ENST00000263735.4:c.722A>G	p.Asp241Gly	p.D241G	ENST00000263735	NM_002354.2	241	gAt/gGt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873005	134873005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	177	536	1	ENST00000398015.3:c.1309G>T	p.Val437Phe	p.V437F	ENST00000398015	NM_004441.4	437	Gtt/Ttt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197772	66197772	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	132	476	0	ENST00000273854.3:c.2927C>A	p.Ala976Glu	p.A976E	ENST00000273854	NM_004439.5	976	gCa/gAa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38953613	38953613	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	148	356	0	ENST00000357387.3:c.2740T>G	p.Leu914Val	p.L914V	ENST00000357387	NM_152756.3	914	Ttg/Gtg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67569238	67569238	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	143	418	0	ENST00000274335.5:c.355G>C	p.Ala119Pro	p.A119P	ENST00000274335		119	Gca/Cca																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449496	149449496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	165	513	0	ENST00000286301.3:c.1450G>A	p.Glu484Lys	p.E484K	ENST00000286301	NM_005211.3	484	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265377	152265377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	101	359	1	ENST00000206249.3:c.830G>A	p.Arg277Lys	p.R277K	ENST00000206249	NM_000125.3	277	aGg/aAg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162622219	162622219	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	93	411	1	ENST00000366898.1:c.478G>T	p.Gly160Ter	p.G160*	ENST00000366898	NM_004562.2	160	Gga/Tga																																																																															
HGF	3082	MSKCC	GRCh37	7	81388100	81388100	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	149	402	0	ENST00000222390.5:c.275C>A	p.Ala92Glu	p.A92E	ENST00000222390	NM_000601.4	92	gCa/gAa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509716	106509716	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	97	432	1	ENST00000359195.3:c.1710G>T	p.Glu570Asp	p.E570D	ENST00000359195	NM_002649.2	570	gaG/gaT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376642	8376642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	177	471	1	ENST00000356435.5:c.4471G>T	p.Ala1491Ser	p.A1491S	ENST00000356435		1491	Gcc/Tcc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391700	139391700	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	292	582	0	ENST00000277541.6:c.6491A>G	p.Lys2164Arg	p.K2164R	ENST00000277541	NM_017617.3	2164	aAa/aGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007358-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			267	223	274	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182665029	182665029	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007358-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1420	131	579	0	ENST00000292782.4:c.697G>T	p.Glu233Ter	p.E233*	ENST00000292782	NM_020640.2	233	Gaa/Taa																																																																															
MLL2	8085	MSKCC	GRCh37	12	49446734	49446734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007358-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			618	244	314	0	ENST00000301067.7:c.1076G>A	p.Arg359His	p.R359H	ENST00000301067	NM_003482.3	359	cGc/cAc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40481442	40481442	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1290480970		P-0007358-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			603	518	653	1	ENST00000264657.5:c.1267C>T	p.Arg423Ter	p.R423*	ENST00000264657	NM_139276.2	423	Cga/Tga																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206653453	206653464	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCATGTGAGTAA	TCATGTGAGTAA	-			P-0007358-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			339	58	172	0	ENST00000367120.3:c.1340+2_1340+13delTGAGTAATCATG		p.X447_splice	ENST00000367120	NM_014002.3	447																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118348798	118348798	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	418	549	0	ENST00000534358.1:c.3451C>T	p.Arg1151Ter	p.R1151*	ENST00000534358	NM_005933.3	1151	Cga/Tga																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39617710	39617710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	92	645	0	ENST00000262039.4:c.1894C>T	p.Pro632Ser	p.P632S	ENST00000262039	NM_002647.2	632	Cca/Tca																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15300172	15300173	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0024911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1212	165	898	1	ENST00000263388.2:c.1103_1104del	p.Thr368LysfsTer21	p.T368Kfs*21	ENST00000263388	NM_000435.2	368	aCA/a																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675073	40675073	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	53	680	0	ENST00000249776.8:c.37T>G	p.Phe13Val	p.F13V	ENST00000249776	NM_033286.3	13	Ttc/Gtc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165024	47165024	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	48	451	1	ENST00000409792.3:c.1102C>T	p.Arg368Ter	p.R368*	ENST00000409792	NM_014159.6	368	Cga/Tga																																																																															
AR	367	MSKCC	GRCh37	X	66766450	66766450	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	15	134	0	ENST00000374690.3:c.1462C>G	p.Gln488Glu	p.Q488E	ENST00000374690	NM_000044.3	488	Cag/Gag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097754	8097754	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1208	256	524	1	ENST00000346208.3:c.136G>T	p.Glu46Ter	p.E46*	ENST00000346208		46	Gag/Tag																																																																															
TET1	80312	MSKCC	GRCh37	10	70411648	70411648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	163	535	2	ENST00000373644.4:c.4322G>T	p.Gly1441Val	p.G1441V	ENST00000373644	NM_030625.2	1441	gGg/gTg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375351	118375351	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	104	376	0	ENST00000534358.1:c.8744C>G	p.Ser2915Cys	p.S2915C	ENST00000534358	NM_005933.3	2915	tCt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	143	568	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CDK8	1024	MSKCC	GRCh37	13	26927985	26927985	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	121	461	0	ENST00000381527.3:c.424C>G	p.Leu142Val	p.L142V	ENST00000381527	NM_001260.1	142	Ctg/Gtg																																																																															
MGA	23269	MSKCC	GRCh37	15	42059422	42059422	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	183	424	0	ENST00000219905.7:c.9142C>G	p.Pro3048Ala	p.P3048A	ENST00000219905	NM_001164273.1	3048	Cct/Gct																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81946227	81946228	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	161	479	2	ENST00000359376.3:c.1960_1961delinsTT	p.Gly654Leu	p.G654L	ENST00000359376	NM_002661.3	654	GGa/TTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	257	549	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55140707	55140707	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1358	210	552	1	ENST00000257290.5:c.1568C>A	p.Ser523Tyr	p.S523Y	ENST00000257290	NM_006206.4	523	tCt/tAt																																																																															
KDR	3791	MSKCC	GRCh37	4	55991444	55991444	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1326	223	584	0	ENST00000263923.4:c.17T>C	p.Leu6Pro	p.L6P	ENST00000263923	NM_002253.2	6	cTg/cCg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361258	66361258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	121	330	0	ENST00000273854.3:c.914G>T	p.Cys305Phe	p.C305F	ENST00000273854	NM_004439.5	305	tGc/tTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1234	226	321	0				ENST00000310581	NM_198253.2																																																																																	
CSF1R	1436	MSKCC	GRCh37	5	149439329	149439329	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	289	570	0	ENST00000286301.3:c.2066C>A	p.Pro689His	p.P689H	ENST00000286301	NM_005211.3	689	cCc/cAc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163807	32163807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	229	406	0	ENST00000375023.3:c.5419G>A	p.Ala1807Thr	p.A1807T	ENST00000375023	NM_004557.3	1807	Gct/Act																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93974412	93974412	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	124	441	0	ENST00000369303.4:c.1642G>T	p.Val548Phe	p.V548F	ENST00000369303	NM_004440.3	548	Gtc/Ttc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932732	39932732	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1579	285	652	0	ENST00000378444.4:c.1867G>T	p.Glu623Ter	p.E623*	ENST00000378444	NM_001123385.1	623	Gaa/Taa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410327	63410327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1420	288	604	1	ENST00000330258.3:c.2840C>T	p.Ser947Phe	p.S947F	ENST00000330258	NM_152424.3	947	tCc/tTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411993	63411993	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	233	569	1	ENST00000330258.3:c.1174G>T	p.Glu392Ter	p.E392*	ENST00000330258	NM_152424.3	392	Gag/Tag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	75	484	0	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0025381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	70	514	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46211473	46211473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	41	329	0	ENST00000334344.6:c.439G>A	p.Gly147Arg	p.G147R	ENST00000334344	NM_152641.2	147	Ggg/Agg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109949	115109949	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0025381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	50	690	0	ENST00000257566.3:c.1929C>G	p.Tyr643Ter	p.Y643*	ENST00000257566	NM_016569.3	643	taC/taG																																																																															
MGA	23269	MSKCC	GRCh37	15	42019575	42019575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	46	555	0	ENST00000219905.7:c.3628C>T	p.Arg1210Trp	p.R1210W	ENST00000219905	NM_001164273.1	1210	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	10	658	0	ENST00000269305.4:c.475G>A	p.Ala159Thr	p.A159T	ENST00000269305	NM_001126112.2	159	Gcc/Acc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849053	156849053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	212	530	1	ENST00000524377.1:c.1945C>T	p.Arg649Trp	p.R649W	ENST00000524377	NM_002529.3	649	Cgg/Tgg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57857547	57857547	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	402	406	0	ENST00000228682.2:c.73C>A	p.Gln25Lys	p.Q25K	ENST00000228682	NM_005269.2	25	Cag/Aag																																																																															
POLE	5426	MSKCC	GRCh37	12	133252384	133252384	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	262	408	0	ENST00000320574.5:c.1043T>G	p.Phe348Cys	p.F348C	ENST00000320574	NM_006231.2	348	tTt/tGt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862845	9862845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	364	537	0	ENST00000330684.3:c.2458G>T	p.Val820Leu	p.V820L	ENST00000330684	NM_001134407.1	820	Gta/Tta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	534	470	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
STK11	6794	MSKCC	GRCh37	19	1207168	1207168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	473	532	0	ENST00000326873.7:c.256C>T	p.Arg86Ter	p.R86*	ENST00000326873	NM_000455.4	86	Cga/Tga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600470	10600470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	468	494	0	ENST00000171111.5:c.1385G>A	p.Gly462Glu	p.G462E	ENST00000171111	NM_203500.1	462	gGg/gAg																																																																															
ERG	2078	MSKCC	GRCh37	21	39775433	39775433	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	313	359	0	ENST00000288319.7:c.587G>T	p.Arg196Ile	p.R196I	ENST00000288319	NM_182918.3	196	aGa/aTa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52676020	52676021	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	433	582	0	ENST00000394830.3:c.1036dup	p.Thr346AsnfsTer11	p.T346Nfs*11	ENST00000394830	NM_018313.4	346	aca/aAca																																																																															
TP63	8626	MSKCC	GRCh37	3	189612028	189612028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	452	414	1	ENST00000264731.3:c.1780C>T	p.Arg594Ter	p.R594*	ENST00000264731	NM_003722.4	594	Cga/Tga																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250530	26250530	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	361	502	0	ENST00000446824.2:c.304G>C	p.Val102Leu	p.V102L	ENST00000446824	NM_021018.2	102	Gtg/Ctg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509032	106509032	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	277	468	0	ENST00000359195.3:c.1026C>A	p.His342Gln	p.H342Q	ENST00000359195	NM_002649.2	342	caC/caA																																																																															
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs121913370		P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	372	343	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317512	1317513	+	downstream_gene_variant	3'Flank	DNP	CC	CC	AA			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	434	584	1				ENST00000381566																																																																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	83	519	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579553	7579606	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGCATCAAATCATCCATTGCTTGGGACGGCAAGGGGGACTGTAGATGGGTGAAA	AGCATCAAATCATCCATTGCTTGGGACGGCAAGGGGGACTGTAGATGGGTGAAA	-			P-0025405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	69	559	0	ENST00000269305.4:c.97-16_134del		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																																
CDK12	51755	MSKCC	GRCh37	17	37618743	37618743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1423	75	535	2	ENST00000447079.4:c.419C>T	p.Ser140Leu	p.S140L	ENST00000447079	NM_015083.1	140	tCg/tTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40757438	40757438	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	98	581	0	ENST00000373198.4:c.2860G>C	p.Asp954His	p.D954H	ENST00000373198	NM_133170.3	954	Gat/Cat																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778244	27778244	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	108	437	0	ENST00000369163.2:c.393C>G	p.Ile131Met	p.I131M	ENST00000369163	NM_003536.2	131	atC/atG																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127912148	127912148	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	36	388	0	ENST00000373547.4:c.722A>G	p.His241Arg	p.H241R	ENST00000373547	NM_002721.4	241	cAc/cGc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683357	88683357	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	86	690	0	ENST00000372037.3:c.1480C>T	p.Arg494Ter	p.R494*	ENST00000372037	NM_004329.2	494	Cga/Tga																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518108	69518108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	115	516	0	ENST00000294312.3:c.257C>T	p.Ala86Val	p.A86V	ENST00000294312	NM_005117.2	86	gCt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0025444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	115	619	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435897	56435897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	67	363	0	ENST00000407977.2:c.1240C>T	p.Gln414Ter	p.Q414*	ENST00000407977		414	Caa/Taa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437612	56437612	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0025444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	71	337	0	ENST00000407977.2:c.850G>T	p.Glu284Ter	p.E284*	ENST00000407977		284	Gag/Tag																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961393	54961393	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	43	288	0	ENST00000312783.6:c.239A>G	p.Gln80Arg	p.Q80R	ENST00000312783	NM_198436.1	80	cAg/cGg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153268138	153268138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1406877044		P-0025444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	52	351	0	ENST00000281708.4:c.670C>T	p.Arg224Ter	p.R224*	ENST00000281708	NM_033632.3	224	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0025451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	325	367	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	414	519	2	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258893	16258893	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs74842071		P-0025451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	77	582	1	ENST00000375759.3:c.6158A>C	p.Asn2053Thr	p.N2053T	ENST00000375759	NM_015001.2	2053	aAc/aCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	76	467	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	78	497	0	ENST00000269305.4:c.808T>C	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	Ttt/Ctt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918491	44918491	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0025452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	30	143	0	ENST00000377967.4:c.975-1G>A		p.X325_splice	ENST00000377967	NM_021140.2	325																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9934519	9934519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	87	361	0	ENST00000330684.3:c.1636C>T	p.Pro546Ser	p.P546S	ENST00000330684	NM_001134407.1	546	Cct/Tct																																																																															
CDH1	999	MSKCC	GRCh37	16	68857361	68857361	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	163	506	0	ENST00000261769.5:c.1996A>T	p.Asn666Tyr	p.N666Y	ENST00000261769	NM_004360.3	666	Aat/Tat																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437567	56437567	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	101	491	0	ENST00000407977.2:c.895del	p.Val299TrpfsTer120	p.V299Wfs*120	ENST00000407977		299	Gtg/tg																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248157	110248157	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	163	437	0	ENST00000374672.4:c.1315C>G	p.Arg439Gly	p.R439G	ENST00000374672	NM_004235.4	439	Cgc/Ggc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0025458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	108	496	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	77	337	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560401	95560401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	170	417	0	ENST00000343455.3:c.5188G>A	p.Gly1730Arg	p.G1730R	ENST00000343455	NM_177438.2	1730	Ggg/Agg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	152	704	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	84	446	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	162	543	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
APC	324	MSKCC	GRCh37	5	112175153	112175153	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	36	264	1	ENST00000257430.4:c.3862G>T	p.Gly1288Ter	p.G1288*	ENST00000257430	NM_000038.5	1288	Gga/Tga																																																																															
ROS1	6098	MSKCC	GRCh37	6	117730805	117730805	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	182	480	0	ENST00000368508.3:c.229C>T	p.Arg77Trp	p.R77W	ENST00000368508	NM_002944.2	77	Cgg/Tgg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214133	36214134	+	missense_variant	Missense_Mutation	DNP	AA	AA	GG			P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	67	744	1	ENST00000222270.7:c.2959_2960delinsGG	p.Lys987Gly	p.K987G	ENST00000222270	NM_014727.1	987	AAg/GGg																																																																															
EP300	2033	MSKCC	GRCh37	22	41572351	41572351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	311	622	1	ENST00000263253.7:c.4880G>A	p.Arg1627Gln	p.R1627Q	ENST00000263253	NM_001429.3	1627	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175350	112175350	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	56	260	0	ENST00000257430.4:c.4059A>T	p.Glu1353Asp	p.E1353D	ENST00000257430	NM_000038.5	1353	gaA/gaT																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93974336	93974336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	121	526	0	ENST00000369303.4:c.1718T>C	p.Val573Ala	p.V573A	ENST00000369303	NM_004440.3	573	gTc/gCc																																																																															
SMO	6608	MSKCC	GRCh37	7	128843413	128843413	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	49	378	0	ENST00000249373.3:c.520T>G	p.Phe174Val	p.F174V	ENST00000249373	NM_005631.4	174	Ttc/Gtc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141551318	141551318	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	105	768	0	ENST00000220592.5:c.1979A>T	p.Lys660Met	p.K660M	ENST00000220592	NM_012154.3	660	aAg/aTg																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20148663	20148663	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	170	618	0	ENST00000379607.5:c.400A>G	p.Ile134Val	p.I134V	ENST00000379607	NM_001412.3	134	Att/Gtt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39914651	39914651	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	187	552	0	ENST00000378444.4:c.4711del	p.His1571ThrfsTer9	p.H1571Tfs*9	ENST00000378444	NM_001123385.1	1571	Cac/ac																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	309	487	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870976	12870976	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	344	224	0	ENST00000228872.4:c.203A>G	p.Lys68Arg	p.K68R	ENST00000228872	NM_004064.3	68	aAa/aGa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129346	152129355	+	frameshift_variant	Frame_Shift_Del	DEL	TCAACAGCGT	TCAACAGCGT	GC			P-0025476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	105	273	2	ENST00000206249.3:c.299_308delinsGC	p.Leu100ArgfsTer54	p.L100Rfs*54	ENST00000206249	NM_000125.3	100	cTCAACAGCGTg/cGCg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860558	151860558	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	434	385	0	ENST00000262189.6:c.10104del	p.Thr3369GlnfsTer15	p.T3369Qfs*15	ENST00000262189	NM_170606.2	3368	ggG/gg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151947965	151947965	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	369	555	0	ENST00000262189.6:c.1708G>T	p.Glu570Ter	p.E570*	ENST00000262189	NM_170606.2	570	Gag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111506	8111507	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGCCAATGGGGACCCTGTCTGCAATGCCTGTGGGCTCTAC			P-0025483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	69	583	0	ENST00000346208.3:c.994_1033dup	p.Tyr345CysfsTer20	p.Y345Cfs*20	ENST00000346208		331	aat/aaTGCCAATGGGGACCCTGTCTGCAATGCCTGTGGGCTCTACt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578382	7578384	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	GAG	GAG	-			P-0025483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	201	426	1	ENST00000269305.4:c.546_548del	p.Cys182_Ser183delinsTer	p.C182_S183delins*	ENST00000269305	NM_001126112.2	182	tgCTCa/tga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691919	30691919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	42	432	1	ENST00000359013.4:c.496G>A	p.Asp166Asn	p.D166N	ENST00000359013	NM_001024847.2	166	Gat/Aat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125697	47125697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	148	378	0	ENST00000409792.3:c.5573C>T	p.Pro1858Leu	p.P1858L	ENST00000409792	NM_014159.6	1858	cCt/cTt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618534	37618534	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	46	396	0	ENST00000447079.4:c.210G>C	p.Leu70Phe	p.L70F	ENST00000447079	NM_015083.1	70	ttG/ttC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	27	554	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49430837	49431424	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGCCTCAGTGCCCATTTAGGGATAACAATAATCACCCTGAGTAACTTGGCTATGTTACCAGCTGAGGTTACCTGTATCTGGGAAGAAGCTGTTTGCCAGCTGCTGCTGCATTGCCAATTGCTGCGGCTTCATGCACATGGAAGGTGGCATGGTGCCCATGGGCTTCTGTGATAGCACTGGCTGTGAGCTCTGCTGGGGTACCAAGCCTGCCTGCCCTCCATGCTGCCCACTTAGCATATGCCCTTGATTGGACACCATAGCCATGGATGGAGCCAGGCGTTGCTGGAGGGCATGAGCTGGTGGCTGGGTGGGCATCAGTGGCTGGGGCAAACCTGGCTGTCGGGCACCTGCAAGACCCAGGGAAAGCTGCTGTTGGGACCCAGCCAAACTGGGAGAAGAGCCCTCATGTGGCAAAGACATGGCCTGGGCAGGGCCTGGTGCAGACAGTAGGGAATGCTGCTGCTGCTGTTGCTGCTGCTGCTGGGCAGGCTGCAACTGTGCTGAAAGCTGCTGCTTCTTCTGCAGCTCCTTCTTCTCATGCTCCAACAGGTCCTCAATGAGCAGGGGTAACTCGCTGGCTACCAGTGA	AGCCTCAGTGCCCATTTAGGGATAACAATAATCACCCTGAGTAACTTGGCTATGTTACCAGCTGAGGTTACCTGTATCTGGGAAGAAGCTGTTTGCCAGCTGCTGCTGCATTGCCAATTGCTGCGGCTTCATGCACATGGAAGGTGGCATGGTGCCCATGGGCTTCTGTGATAGCACTGGCTGTGAGCTCTGCTGGGGTACCAAGCCTGCCTGCCCTCCATGCTGCCCACTTAGCATATGCCCTTGATTGGACACCATAGCCATGGATGGAGCCAGGCGTTGCTGGAGGGCATGAGCTGGTGGCTGGGTGGGCATCAGTGGCTGGGGCAAACCTGGCTGTCGGGCACCTGCAAGACCCAGGGAAAGCTGCTGTTGGGACCCAGCCAAACTGGGAGAAGAGCCCTCATGTGGCAAAGACATGGCCTGGGCAGGGCCTGGTGCAGACAGTAGGGAATGCTGCTGCTGCTGTTGCTGCTGCTGCTGGGCAGGCTGCAACTGTGCTGAAAGCTGCTGCTTCTTCTGCAGCTCCTTCTTCTCATGCTCCAACAGGTCCTCAATGAGCAGGGGTAACTCGCTGGCTACCAGTGA	-			P-0025492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	26	96	2	ENST00000301067.7:c.9715_10231+71del		p.X3239_splice	ENST00000301067	NM_003482.3	3239																																																																																
ERCC5	2073	MSKCC	GRCh37	13	103518055	103518075	+	inframe_deletion	In_Frame_Del	DEL	GAACTTCAAGCAGAATTCCCT	GAACTTCAAGCAGAATTCCCT	-			P-0025492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	142	307	0	ENST00000355739.4:c.1996_2016del	p.Leu666_Glu672del	p.L666_E672del	ENST00000355739	NM_000123.3	665	GAACTTCAAGCAGAATTCCCT/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577115	7577115	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	353	641	0	ENST00000269305.4:c.823delT	p.Cys275ValfsTer70	p.C275Vfs*70	ENST00000269305	NM_001126112.2	275	Tgt/gt																																																																															
ALK	238	MSKCC	GRCh37	2	30143370	30143370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	138	399	0	ENST00000389048.3:c.156G>T	p.Lys52Asn	p.K52N	ENST00000389048	NM_004304.4	52	aaG/aaT																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876231	35876251	+	inframe_deletion	In_Frame_Del	DEL	AGGGGATGTGCAGAGCCCCAA	AGGGGATGTGCAGAGCCCCAA	-			P-0025492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	75	505	0	ENST00000303115.3:c.1023_1043del	p.Gly342_Asn348del	p.G342_N348del	ENST00000303115	NM_002185.3	341	ggAGGGGATGTGCAGAGCCCCAAc/ggc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0025494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	280	651	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
MET	4233	MSKCC	GRCh37	7	116395570	116395570	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0025503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	44	472	1	ENST00000397752.3:c.1862+1G>A		p.X621_splice	ENST00000397752	NM_000245.2	621																																																																																
CDKN1B	1027	MSKCC	GRCh37	12	12871094	12871094	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	57	298	0	ENST00000228872.4:c.322del	p.Asp108MetfsTer11	p.D108Mfs*11	ENST00000228872	NM_004064.3	107	caG/ca																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62320877	62320877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	99	873	0	ENST00000508582.2:c.1973C>T	p.Ser658Leu	p.S658L	ENST00000508582		658	tCa/tTa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117375	115117381	+	frameshift_variant	Frame_Shift_Del	DEL	TACTATA	TACTATA	-			P-0025503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	97	495	0	ENST00000257566.3:c.793_799del	p.Tyr265HisfsTer15	p.Y265Hfs*15	ENST00000257566	NM_016569.3	265	TATAGTAca/ca																																																																															
EP300	2033	MSKCC	GRCh37	22	41533773	41533773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	29	467	0	ENST00000263253.7:c.1739G>A	p.Arg580Gln	p.R580Q	ENST00000263253	NM_001429.3	580	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	187	649	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0025546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	152	571	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48941668	48941669	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	65	378	0	ENST00000267163.4:c.983dup	p.Asn328LysfsTer2	p.N328Kfs*2	ENST00000267163	NM_000321.2	326	-/A																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78444666	78444666	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	55	381	0	ENST00000370768.2:c.23del	p.Pro8LeufsTer46	p.P8Lfs*46	ENST00000370768	NM_003902.3	8	cCt/ct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720717	89720717	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	15	111	0	ENST00000371953.3:c.868del	p.Val290Ter	p.V290*	ENST00000371953	NM_000314.4	290	Gta/ta																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426578	49426592	+	inframe_deletion	In_Frame_Del	DEL	CTGCTGCTGTTGAAA	CTGCTGCTGTTGAAA	-			P-0025546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	109	564	0	ENST00000301067.7:c.11896_11910del	p.Phe3966_Gln3970del	p.F3966_Q3970del	ENST00000301067	NM_003482.3	3966	TTTCAACAGCAGCAG/-																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865120	57865120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	122	757	1	ENST00000228682.2:c.2597C>A	p.Thr866Asn	p.T866N	ENST00000228682	NM_005269.2	866	aCc/aAc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119631604	119631604	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	55	420	0	ENST00000316626.5:c.662A>T	p.Tyr221Phe	p.Y221F	ENST00000316626		221	tAc/tTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56176940	56176940	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	48	436	0	ENST00000399503.3:c.2210T>A	p.Val737Asp	p.V737D	ENST00000399503	NM_005921.1	737	gTc/gAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465563	8465563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	105	643	0	ENST00000356435.5:c.3617G>T	p.Gly1206Val	p.G1206V	ENST00000356435		1206	gGg/gTg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197720	123197720	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	54	460	0	ENST00000218089.9:c.1844A>G	p.Gln615Arg	p.Q615R	ENST00000218089	NM_001042749.1	615	cAg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501191		P-0025547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	38	542	1	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	54	514	0	ENST00000256078.4:c.436G>C	p.Ala146Pro	p.A146P	ENST00000256078	NM_033360.2	146	Gca/Cca																																																																															
HGF	3082	MSKCC	GRCh37	7	81339524	81339524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	71	528	0	ENST00000222390.5:c.1480C>T	p.Arg494Ter	p.R494*	ENST00000222390	NM_000601.4	494	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0025548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	208	631	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591901	48591901	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	79	456	0	ENST00000342988.3:c.1064A>G	p.Asp355Gly	p.D355G	ENST00000342988	NM_005359.5	355	gAc/gGc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149512490	149512490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	45	390	0	ENST00000261799.4:c.950G>A	p.Arg317Gln	p.R317Q	ENST00000261799	NM_002609.3	317	cGg/cAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830519	72830521	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0025548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	77	517	0	ENST00000268489.5:c.6060_6062del	p.Gln2021del	p.Q2021del	ENST00000268489	NM_006885.3	2020	aaACAg/aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577546	7577557	+	inframe_deletion	In_Frame_Del	DEL	GCCGCCCATGCA	GCCGCCCATGCA	-			P-0025548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	83	549	0	ENST00000269305.4:c.724_735del	p.Cys242_Gly245del	p.C242_G245del	ENST00000269305	NM_001126112.2	242	TGCATGGGCGGC/-																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436002	56436002	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	41	317	0	ENST00000407977.2:c.1135C>T	p.Gln379Ter	p.Q379*	ENST00000407977		379	Cag/Tag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048637	180048637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	67	476	0	ENST00000261937.6:c.1925G>A	p.Arg642His	p.R642H	ENST00000261937	NM_182925.4	642	cGc/cAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933416	39933416	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0025548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	79	280	0	ENST00000378444.4:c.1183A>T	p.Lys395Ter	p.K395*	ENST00000378444	NM_001123385.1	395	Aag/Tag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453149	140453149	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	182	428	0	ENST00000288602.6:c.1786G>C	p.Gly596Arg	p.G596R	ENST00000288602	NM_004333.4	596	Ggt/Cgt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730008	41730008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	194	476	1	ENST00000242208.4:c.521G>A	p.Arg174His	p.R174H	ENST00000242208	NM_002192.2	174	cGc/cAc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220506	1220506	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0025549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	143	385	1	ENST00000326873.7:c.597+2T>A		p.X199_splice	ENST00000326873	NM_000455.4	199																																																																																
UPF1	5976	MSKCC	GRCh37	19	18967828	18967828	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0025549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	202	567	0	ENST00000262803.5:c.1967A>G	p.Gln656Arg	p.Q656R	ENST00000262803	NM_002911.3	656	cAg/cGg																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792521	33792521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	78	156	0	ENST00000498907.2:c.800G>T	p.Gly267Val	p.G267V	ENST00000498907	NM_004364.3	267	gGc/gTc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467441	25467441	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	178	483	0	ENST00000264709.3:c.1635G>T	p.Glu545Asp	p.E545D	ENST00000264709	NM_175629.2	545	gaG/gaT																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31431743	31431743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	178	417	0	ENST00000344624.3:c.3085G>A	p.Asp1029Asn	p.D1029N	ENST00000344624		1029	Gac/Aac																																																																															
HGF	3082	MSKCC	GRCh37	7	81386596	81386596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	201	458	1	ENST00000222390.5:c.391G>T	p.Gly131Cys	p.G131C	ENST00000222390	NM_000601.4	131	Ggt/Tgt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528625	8528625	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	128	399	0	ENST00000356435.5:c.507C>A	p.Ser169Arg	p.S169R	ENST00000356435		169	agC/agA																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044473	47044473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	146	225	1	ENST00000329236.7:c.1736G>A	p.Arg579His	p.R579H	ENST00000329236	NM_001204466.1	579	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0025550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	365	652	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89725043	89725043	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0025550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	83	260	0	ENST00000371953.3:c.1027-1G>T		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																																
CTCF	10664	MSKCC	GRCh37	16	67645309	67645309	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	114	444	0	ENST00000264010.4:c.574C>G	p.Gln192Glu	p.Q192E	ENST00000264010	NM_006565.3	192	Caa/Gaa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15960859	15960859	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	129	308	0	ENST00000268712.3:c.6361C>G	p.Pro2121Ala	p.P2121A	ENST00000268712	NM_006311.3	2121	Cca/Gca																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71050178	71050178	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	86	497	0	ENST00000318789.4:c.1007G>C	p.Arg336Thr	p.R336T	ENST00000318789	NM_032682.5	336	aGa/aCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0025553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	18	556	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0025558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	73	733	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119069	70119069	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	90	512	0	ENST00000245479.2:c.642del	p.Ser215ProfsTer4	p.S215Pfs*4	ENST00000245479	NM_000346.3	214	tCc/tc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420314	88420314	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767941638		P-0025558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	31	531	2	ENST00000360948.2:c.2372G>A	p.Arg791Gln	p.R791Q	ENST00000360948	NM_001012338.2	791	cGg/cAg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713759	30713759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	37	561	0	ENST00000359013.4:c.1159C>T	p.His387Tyr	p.H387Y	ENST00000359013	NM_001024847.2	387	Cac/Tac																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983019	201983019	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149307595		P-0025558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	83	770	2	ENST00000359651.3:c.868G>A	p.Glu290Lys	p.E290K	ENST00000359651		290	Gag/Aag																																																																															
ALK	238	MSKCC	GRCh37	2	29446386	29446386	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371521416		P-0025558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	77	798	2	ENST00000389048.3:c.3181C>T	p.Arg1061Trp	p.R1061W	ENST00000389048	NM_004304.4	1061	Cgg/Tgg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274859	41274859	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	48	666	0	ENST00000349496.5:c.1109T>G	p.Leu370Arg	p.L370R	ENST00000349496	NM_001904.3	370	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242442	55242443	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTAAAATTCCCGTCGCTA			P-0025566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	183	555	0	ENST00000275493.2:c.2214_2231dup	p.Ile740_Lys745dup	p.I740_K745dup	ENST00000275493	NM_005228.3	740	gtt/gTTAAAATTCCCGTCGCTAtt																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649957	88649957	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	222	637	0	ENST00000372037.3:c.206A>G	p.Asp69Gly	p.D69G	ENST00000372037	NM_004329.2	69	gAt/gGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	69	654	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023696	27023696	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	60	310	0	ENST00000324856.7:c.802C>T	p.Gln268Ter	p.Q268*	ENST00000324856	NM_006015.4	268	Cag/Tag																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025510	1025510	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	63	405	0	ENST00000358495.3:c.865G>A	p.Ala289Thr	p.A289T	ENST00000358495	NM_134424.2	289	Gca/Aca																																																																															
MGA	23269	MSKCC	GRCh37	15	41961363	41961363	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	95	461	0	ENST00000219905.7:c.271C>T	p.Arg91Ter	p.R91*	ENST00000219905	NM_001164273.1	91	Cga/Tga																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731107	162731107	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	148	540	0	ENST00000367921.3:c.962C>A	p.Pro321His	p.P321H	ENST00000367921	NM_006182.2	321	cCc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133226032	133226032	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	57	485	0	ENST00000320574.5:c.3865C>A	p.Arg1289Ser	p.R1289S	ENST00000320574	NM_006231.2	1289	Cgc/Agc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987179	36987193	+	inframe_deletion	In_Frame_Del	DEL	CATGCCGCTCATGTT	CATGCCGCTCATGTT	-			P-0025568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	39	408	0	ENST00000354822.5:c.496_510del	p.Asn166_Met170del	p.N166_M170del	ENST00000354822	NM_001079668.2	166	AACATGAGCGGCATG/-																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43700188	43700188	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	88	456	0	ENST00000382044.4:c.5699del	p.Gly1900ValfsTer6	p.G1900Vfs*6	ENST00000382044	NM_001141980.1	1900	gGt/gt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713554	30713555	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	110	418	0	ENST00000359013.4:c.956dup	p.Ser320LeufsTer8	p.S320Lfs*8	ENST00000359013	NM_001024847.2	318	-/T																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541970	187541970	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs189271562		P-0025568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	84	495	1	ENST00000441802.2:c.5770G>A	p.Gly1924Arg	p.G1924R	ENST00000441802	NM_005245.3	1924	Ggg/Agg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039321	47039321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	88	533	0	ENST00000329236.7:c.713C>T	p.Ser238Phe	p.S238F	ENST00000329236	NM_001204466.1	238	tCc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	281	677	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0025569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	42	285	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220382	1220382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	58	380	0	ENST00000326873.7:c.475C>T	p.Gln159Ter	p.Q159*	ENST00000326873	NM_000455.4	159	Cag/Tag																																																																															
ALK	238	MSKCC	GRCh37	2	29455230	29455230	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	64	531	0	ENST00000389048.3:c.2572C>A	p.Pro858Thr	p.P858T	ENST00000389048	NM_004304.4	858	Cca/Aca																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499327	89499327	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0025569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	57	416	0	ENST00000336596.2:c.2497G>T	p.Val833Leu	p.V833L	ENST00000336596	NM_005233.5	833	Gta/Tta																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94124447	94124447	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	68	649	0	ENST00000369303.4:c.136G>T	p.Glu46Ter	p.E46*	ENST00000369303	NM_004440.3	46	Gag/Tag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39935750	39935750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	64	563	0	ENST00000378444.4:c.122C>A	p.Ala41Asp	p.A41D	ENST00000378444	NM_001123385.1	41	gCc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	49	682	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0025570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	51	667	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971176	21971177	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	37	462	0	ENST00000304494.5:c.181dup	p.Glu61GlyfsTer59	p.E61Gfs*59	ENST00000304494	NM_000077.4	61	gag/gGag																																																																															
MET	4233	MSKCC	GRCh37	7	116412022	116412022	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	148	663	0	ENST00000397752.3:c.3007T>A	p.Tyr1003Asn	p.Y1003N	ENST00000397752	NM_000245.2	1003	Tac/Aac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0025574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	79	470	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117330	115117330	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	102	500	0	ENST00000257566.3:c.844A>G	p.Thr282Ala	p.T282A	ENST00000257566	NM_016569.3	282	Act/Gct																																																																															
MED12	9968	MSKCC	GRCh37	X	70346281	70346281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	123	610	0	ENST00000374080.3:c.2632G>T	p.Asp878Tyr	p.D878Y	ENST00000374080		878	Gac/Tac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0025575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	69	392	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259442	55259442	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	63	328	0	ENST00000275493.2:c.2500G>C	p.Val834Leu	p.V834L	ENST00000275493	NM_005228.3	834	Gtg/Ctg																																																																															
ERF	2077	MSKCC	GRCh37	19	42754654	42754654	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	51	436	0	ENST00000222329.4:c.86T>A	p.Leu29Gln	p.L29Q	ENST00000222329	NM_006494.2	29	cTg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55086998	55087018	+	inframe_deletion	In_Frame_Del	DEL	GCGCTCCTGGCGCTGCTGGCT	GCGCTCCTGGCGCTGCTGGCT	-			P-0025576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	23	347	0	ENST00000275493.2:c.34_54del	p.Leu12_Leu18del	p.L12_L18del	ENST00000275493	NM_005228.3	10	GCGCTCCTGGCGCTGCTGGCT/-																																																																															
SETD8	387893	MSKCC	GRCh37	12	123875190	123875190	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	24	408	0	ENST00000330479.4:c.146C>G	p.Thr49Ser	p.T49S	ENST00000330479	NM_020382.3	49	aCc/aGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591950	48591958	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CAGGACAGA	CAGGACAGA	TTGAGAG			P-0025589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	70	372	0	ENST00000342988.3:c.1113_1121delinsTTGAGAG	p.Arg372Ter	p.R372*	ENST00000342988	NM_005359.5	371	caCAGGACAGAa/caTTGAGAGa																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175867	24175867	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	64	471	0	ENST00000263121.7:c.1096del	p.Arg366AlafsTer10	p.R366Afs*10	ENST00000263121	NM_003073.3	365	atC/at																																																																															
KIT	3815	MSKCC	GRCh37	4	55589782	55589782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	70	388	0	ENST00000288135.5:c.1264G>A	p.Val422Met	p.V422M	ENST00000288135	NM_000222.2	422	Gtg/Atg																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772946	135772965	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTGTTTTTTTCTAGCTCT	TTCTGTTTTTTTCTAGCTCT	-			P-0025589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	35	383	0	ENST00000298552.3:c.2658_2677del	p.Glu887ProfsTer10	p.E887Pfs*10	ENST00000298552	NM_001162426.1	886	aaAGAGCTAGAAAAAAACAGAAgc/aagc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	433	585	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	143	457	0	ENST00000326873.7:c.709G>C	p.Asp237His	p.D237H	ENST00000326873	NM_000455.4	237	Gac/Cac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600005	10600005	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	248	565	0	ENST00000171111.5:c.1571del	p.Gly524AlafsTer8	p.G524Afs*8	ENST00000171111	NM_203500.1	524	gGc/gc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870833	12870833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	158	135	0	ENST00000228872.4:c.61del	p.Ala21ArgfsTer21	p.A21Rfs*21	ENST00000228872	NM_004064.3	20	caG/ca																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56774057	56774057	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	196	461	0	ENST00000337432.4:c.408G>T	p.Met136Ile	p.M136I	ENST00000337432	NM_058216.2	136	atG/atT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132621	11132621	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	244	478	0	ENST00000344626.4:c.2837C>A	p.Pro946His	p.P946H	ENST00000344626	NM_003072.3	946	cCc/cAc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31388653	31388653	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	230	432	0	ENST00000328111.2:c.1918G>T	p.Gly640Cys	p.G640C	ENST00000328111	NM_006892.3	640	Ggc/Tgc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121337	29121337	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	262	599	0	ENST00000328354.6:c.338A>G	p.Tyr113Cys	p.Y113C	ENST00000328354	NM_007194.3	113	tAc/tGc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499486	89499486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	153	331	0	ENST00000336596.2:c.2656G>T	p.Gly886Cys	p.G886C	ENST00000336596	NM_005233.5	886	Ggc/Tgc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294553	1294554	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	74	258	0	ENST00000310581.5:c.447_448delinsTT	p.Val150Phe	p.V150F	ENST00000310581	NM_198253.2	149	ctGGtt/ctTTtt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31405810	31405810	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	110	380	0	ENST00000344624.3:c.3968G>T	p.Gly1323Val	p.G1323V	ENST00000344624		1323	gGa/gTa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196135	138196135	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	139	364	0	ENST00000237289.4:c.449A>C	p.Gln150Pro	p.Q150P	ENST00000237289	NM_001270507.1	150	cAg/cCg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341818	8341818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	228	630	0	ENST00000356435.5:c.4822G>T	p.Ala1608Ser	p.A1608S	ENST00000356435		1608	Gca/Tca																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028757	47028757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	222	501	1	ENST00000329236.7:c.61C>A	p.Arg21Ser	p.R21S	ENST00000329236	NM_001204466.1	21	Cgc/Agc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48651700	48651700	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	177	392	0	ENST00000376670.3:c.866A>T	p.His289Leu	p.H289L	ENST00000376670	NM_002049.3	289	cAc/cTc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654643	67654643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	37	473	1	ENST00000264010.4:c.1130G>A	p.Arg377His	p.R377H	ENST00000264010	NM_006565.3	377	cGt/cAt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645192	67645196	+	frameshift_variant	Frame_Shift_Del	DEL	ATGAT	ATGAT	-			P-0025604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	133	496	0	ENST00000264010.4:c.460_464del	p.Ile154ProfsTer7	p.I154Pfs*7	ENST00000264010	NM_006565.3	153	ATGATa/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0025612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	174	814	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16052797	16052801	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAT	AAAAT	-			P-0025612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	139	727	0	ENST00000268712.3:c.873_877del	p.Leu291PhefsTer2	p.L291Ffs*2	ENST00000268712	NM_006311.3	291	ttATTTTtt/tttt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	12	781	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
AR	367	MSKCC	GRCh37	X	66765163	66765163	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	12	314	0	ENST00000374690.3:c.175C>T	p.Gln59Ter	p.Q59*	ENST00000374690	NM_000044.3	59	Cag/Tag																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871059	12871059	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0025612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	103	411	0	ENST00000228872.4:c.286A>T	p.Lys96Ter	p.K96*	ENST00000228872	NM_004064.3	96	Aaa/Taa																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38545402	38545402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	32	778	0	ENST00000299084.4:c.16G>C	p.Ala6Pro	p.A6P	ENST00000299084	NM_152594.2	6	Gcg/Ccg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155599	56155599	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	205	587	0	ENST00000399503.3:c.691G>T	p.Glu231Ter	p.E231*	ENST00000399503	NM_005921.1	231	Gag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0025691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	102	373	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0025691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	82	266	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578217	7578217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	33	461	0	ENST00000269305.4:c.632C>T	p.Thr211Ile	p.T211I	ENST00000269305	NM_001126112.2	211	aCt/aTt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933561	36933561	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	33	413	0	ENST00000361632.4:c.1726G>A	p.Ala576Thr	p.A576T	ENST00000361632		576	Gcc/Acc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16248837	16248837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	29	412	0	ENST00000375759.3:c.1843G>A	p.Glu615Lys	p.E615K	ENST00000375759	NM_015001.2	615	Gaa/Aaa																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012845	176012845	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0025691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	55	352	0	ENST00000367669.3:c.1530+1del		p.X510_splice	ENST00000367669	NM_022457.5	510																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66201739	66201739	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	24	410	0	ENST00000273854.3:c.2763C>A	p.Ser921Arg	p.S921R	ENST00000273854	NM_004439.5	921	agC/agA																																																																															
TERT	7015	MSKCC	GRCh37	5	1293461	1293461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	166	430	0	ENST00000310581.5:c.1540G>T	p.Val514Leu	p.V514L	ENST00000310581	NM_198253.2	514	Gtg/Ttg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671655	30671655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	46	425	0	ENST00000376406.3:c.5305G>A	p.Ala1769Thr	p.A1769T	ENST00000376406	NM_014641.2	1769	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	226	562	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0025694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	89	430	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	175	464	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	160	528	2	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266678	41266680	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-			P-0025694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	75	423	0	ENST00000349496.5:c.477_479del	p.Leu160del	p.L160del	ENST00000349496	NM_001904.3	159	CTG/-																																																																															
APC	324	MSKCC	GRCh37	5	112175155	112175161	+	frameshift_variant	Frame_Shift_Del	DEL	ATGTAAT	ATGTAAT	-			P-0025694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	45	213	0	ENST00000257430.4:c.3864_3870del	p.Cys1289ArgfsTer14	p.C1289Rfs*14	ENST00000257430	NM_000038.5	1288	ggATGTAAT/gg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099173	157099173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	23	195	0	ENST00000346085.5:c.110C>A	p.Ser37Tyr	p.S37Y	ENST00000346085	NM_020732.3	37	tCc/tAc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858600	57858600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	51	425	0	ENST00000228682.2:c.338G>A	p.Arg113Gln	p.R113Q	ENST00000228682	NM_005269.2	113	cGa/cAa																																																																															
MALT1	10892	MSKCC	GRCh37	18	56390361	56390361	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	175	320	0	ENST00000348428.3:c.1100A>G	p.Tyr367Cys	p.Y367C	ENST00000348428	NM_006785.3	367	tAc/tGc																																																																															
MED12	9968	MSKCC	GRCh37	X	70348984	70348984	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	159	411	0	ENST00000374080.3:c.3496G>T	p.Glu1166Ter	p.E1166*	ENST00000374080		1166	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0025699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	124	525	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0025699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	155	437	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
RIT1	6016	MSKCC	GRCh37	1	155870257	155870257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	114	494	0	ENST00000368323.3:c.582G>T	p.Glu194Asp	p.E194D	ENST00000368323	NM_006912.5	194	gaG/gaT																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176153806	176153806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	35	417	0	ENST00000367669.3:c.430G>A	p.Glu144Lys	p.E144K	ENST00000367669	NM_022457.5	144	Gaa/Aaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690810	89690810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	29	326	0	ENST00000371953.3:c.217G>A	p.Glu73Lys	p.E73K	ENST00000371953	NM_000314.4	73	Gaa/Aaa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602532	10602532	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	74	406	0	ENST00000171111.5:c.1046A>G	p.Asp349Gly	p.D349G	ENST00000171111	NM_203500.1	349	gAc/gGc																																																																															
EP300	2033	MSKCC	GRCh37	22	41531867	41531867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	190	490	0	ENST00000263253.7:c.1579C>T	p.Leu527Phe	p.L527F	ENST00000263253	NM_001429.3	527	Ctt/Ttt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000142-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1131	273	368	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0000142-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			618	53	474	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
MSH2	4436	MSKCC	GRCh37	2	47657066	47657066	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000142-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			450	31	209	0	ENST00000233146.2:c.1262T>G	p.Leu421Arg	p.L421R	ENST00000233146	NM_000251.2	421	cTg/cGg																																																																															
TERT	7015	MSKCC	GRCh37	5	1279525	1279525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000142-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			193	34	354	0	ENST00000310581.5:c.2011C>T	p.Arg671Trp	p.R671W	ENST00000310581	NM_198253.2	671	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000155-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			134	102	297	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921566	178921566	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793349		P-0000155-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			132	81	269	0	ENST00000263967.3:c.1048G>A	p.Asp350Asn	p.D350N	ENST00000263967	NM_006218.2	350	Gac/Aac																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161217	56161217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000155-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	91	390	0	ENST00000399503.3:c.1086G>A	p.Met362Ile	p.M362I	ENST00000399503	NM_005921.1	362	atG/atA																																																																															
MLL	4297	MSKCC	GRCh37	11	118344177	118344177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000155-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			93	90	288	0	ENST00000534358.1:c.2303C>T	p.Ser768Leu	p.S768L	ENST00000534358	NM_005933.3	768	tCa/tTa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160634	56160634	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000155-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			235	174	305	0	ENST00000399503.3:c.910delA	p.Thr304GlnfsTer8	p.T304Qfs*8	ENST00000399503	NM_005921.1	303	gAa/ga																																																																															
CDH1	999	MSKCC	GRCh37	16	68849488	68849489	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0000155-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			143	153	488	0	ENST00000261769.5:c.1397_1398delTC	p.Leu466HisfsTer16	p.L466Hfs*16	ENST00000261769	NM_004360.3	464	gTC/g																																																																															
HGF	3082	MSKCC	GRCh37	7	81331973	81331973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000191-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1173	470	520	0	ENST00000222390.5:c.2111G>A	p.Gly704Asp	p.G704D	ENST00000222390	NM_000601.4	704	gGt/gAt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	404947	404947	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000191-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1798	284	620	0	ENST00000399788.2:c.4247C>G	p.Pro1416Arg	p.P1416R	ENST00000399788	NM_001042603.1	1416	cCa/cGa																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811750	102811750	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000191-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1653	92	593	0	ENST00000307046.8:c.434A>G	p.Lys145Arg	p.K145R	ENST00000307046	NM_001111285.1	145	aAg/aGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587782082		P-0000191-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	612	323	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0000252-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			260	157	377	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541675	187541675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000252-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	134	267	1	ENST00000441802.2:c.6065G>T	p.Arg2022Ile	p.R2022I	ENST00000441802	NM_005245.3	2022	aGa/aTa																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30293194	30293194	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000252-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			235	145	321	0	ENST00000322652.5:c.484A>C	p.Thr162Pro	p.T162P	ENST00000322652	NM_015355.2	162	Act/Cct																																																																															
MET	4233	MSKCC	GRCh37	7	116412030	116412044	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TACTTTTCCAGAAGG	TACTTTTCCAGAAGG	-			P-0000289-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			181	58	158	0	ENST00000397752.3:c.3017_3028+3delCTTTTCCAGAAGGTA		p.X1006_splice	ENST00000397752	NM_000245.2	1006																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000299-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			609	121	261	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SDHB	6390	MSKCC	GRCh37	1	17371265	17371265	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs200131173		P-0000299-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			599	114	225	0	ENST00000375499.3:c.191A>C	p.Asp64Ala	p.D64A	ENST00000375499	NM_003000.2	64	gAc/gCc																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154815	2154815	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000299-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			846	125	410	1	ENST00000434045.2:c.406C>A	p.Leu136Met	p.L136M	ENST00000434045	NM_001127598.1	136	Ctg/Atg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28896463	28896463	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000299-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			609	55	233	0	ENST00000282397.4:c.2987T>C	p.Met996Thr	p.M996T	ENST00000282397	NM_002019.4	996	aTg/aCg																																																																															
NF1	4763	MSKCC	GRCh37	17	29654718	29654718	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000299-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			623	93	218	0	ENST00000358273.4:c.5470A>G	p.Ile1824Val	p.I1824V	ENST00000358273	NM_001042492.2	1824	Atc/Gtc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63553924	63553924	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0000299-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			583	118	293	0	ENST00000307078.5:c.815G>T	p.Arg272Met	p.R272M	ENST00000307078	NM_004655.3	272	aGg/aTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220427	1220427	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000299-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			521	112	380	0	ENST00000326873.7:c.520C>G	p.His174Asp	p.H174D	ENST00000326873	NM_000455.4	174	Cac/Gac																																																																															
PARP1	142	MSKCC	GRCh37	1	226579931	226579931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000314-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			823	354	648	1	ENST00000366794.5:c.371C>T	p.Thr124Met	p.T124M	ENST00000366794	NM_001618.3	124	aCg/aTg																																																																															
BARD1	580	MSKCC	GRCh37	2	215646150	215646150	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000314-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	374	411	0	ENST00000260947.4:c.448C>T	p.Arg150Ter	p.R150*	ENST00000260947	NM_000465.2	150	Cga/Tga																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143044479	143044479	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000314-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			880	153	546	0	ENST00000262992.4:c.1983G>C	p.Leu661Phe	p.L661F	ENST00000262992	NM_001101669.1	661	ttG/ttC																																																																															
FAT1	2195	MSKCC	GRCh37	4	187554840	187554840	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0000314-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			561	107	441	0	ENST00000441802.2:c.4321C>T	p.Gln1441Ter	p.Q1441*	ENST00000441802	NM_005245.3	1441	Cag/Tag																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056153	26056153	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000314-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			839	155	391	0	ENST00000343677.2:c.504G>C	p.Lys168Asn	p.K168N	ENST00000343677	NM_005319.3	168	aaG/aaC																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923603	39923603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000314-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			557	59	248	0	ENST00000378444.4:c.3488G>A	p.Arg1163Gln	p.R1163Q	ENST00000378444	NM_001123385.1	1163	cGa/cAa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922058	39922058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000314-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			257	636	409	0	ENST00000378444.4:c.4114delG	p.Glu1372SerfsTer8	p.E1372Sfs*8	ENST00000378444	NM_001123385.1	1372	Gag/ag																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0000317-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			33	100	382	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CD276	80381	MSKCC	GRCh37	15	73994790	73994790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000317-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	52	347	0	ENST00000318443.5:c.274C>T	p.Arg92Cys	p.R92C	ENST00000318443	NM_001024736.1	92	Cgc/Tgc																																																																															
CIC	23152	MSKCC	GRCh37	19	42788872	42788872	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000317-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	92	383	2	ENST00000575354.2:c.16A>G	p.Arg6Gly	p.R6G	ENST00000575354	NM_015125.3	6	Agg/Ggg																																																																															
PARP1	142	MSKCC	GRCh37	1	226564961	226564961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000337-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			899	100	416	0	ENST00000366794.5:c.1789G>A	p.Gly597Ser	p.G597S	ENST00000366794	NM_001618.3	597	Ggt/Agt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371908	55371908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000337-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			203	19	268	0	ENST00000297316.4:c.598G>T	p.Gly200Cys	p.G200C	ENST00000297316	NM_022454.3	200	Ggc/Tgc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115854	8115855	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000337-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1195	116	1289	0	ENST00000346208.3:c.1201dupT	p.Ser401PhefsTer106	p.S401Ffs*106	ENST00000346208		400	-/T																																																																															
RAF1	5894	MSKCC	GRCh37	3	12627290	12627290	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000353-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1222	146	472	0	ENST00000251849.4:c.1426C>G	p.Leu476Val	p.L476V	ENST00000251849	NM_002880.3	476	Ctc/Gtc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138382789	138382789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000353-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1029	72	331	0	ENST00000289153.2:c.2755G>A	p.Asp919Asn	p.D919N	ENST00000289153	NM_006219.2	919	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0000353-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	135	262	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457390	67457390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000373-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			480	95	373	0	ENST00000327367.4:c.364G>A	p.Val122Met	p.V122M	ENST00000327367	NM_005902.3	122	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0000418-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			71	168	177	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
MLL2	8085	MSKCC	GRCh37	12	49421790	49421790	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0000418-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	180	535	5	ENST00000301067.7:c.14515+2T>C		p.X4839_splice	ENST00000301067	NM_003482.3	4839																																																																																
EIF1AX	1964	MSKCC	GRCh37	X	20156740	20156740	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000477-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			624	417	466	0	ENST00000379607.5:c.17G>A	p.Gly6Asp	p.G6D	ENST00000379607	NM_001412.3	6	gGt/gAt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117746743	117746743	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000484-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			805	65	362	0	ENST00000368508.3:c.77A>G	p.Gln26Arg	p.Q26R	ENST00000368508	NM_002944.2	26	cAg/cGg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44945155	44945155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000484-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			412	59	333	0	ENST00000377967.4:c.3479G>T	p.Gly1160Val	p.G1160V	ENST00000377967	NM_021140.2	1160	gGc/gTc																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204732724	204732724	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000509-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			911	138	558	1	ENST00000302823.3:c.59G>A	p.Trp20Ter	p.W20*	ENST00000302823	NM_005214.4	20	tGg/tAg																																																																															
MLL3	58508	MSKCC	GRCh37	7	151859653	151859653	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000509-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			539	111	359	0	ENST00000262189.6:c.11009A>C	p.Asn3670Thr	p.N3670T	ENST00000262189	NM_170606.2	3670	aAt/aCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs17849781		P-0000532-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	86	633	0	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0000542-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			117	132	302	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249855	110249855	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000542-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			127	26	145	0	ENST00000374672.4:c.820T>G	p.Cys274Gly	p.C274G	ENST00000374672	NM_004235.4	274	Tgc/Ggc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89725047	89725047	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0000542-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	288	521	0	ENST00000371953.3:c.1030A>T	p.Lys344Ter	p.K344*	ENST00000371953	NM_000314.4	344	Aag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910866	32910866	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000542-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			379	36	302	2	ENST00000380152.3:c.2374T>C	p.Tyr792His	p.Y792H	ENST00000380152		792	Tac/Cac																																																																															
AKT1	207	MSKCC	GRCh37	14	105258970	105258970	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000542-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	66	551	0	ENST00000349310.3:c.11T>G	p.Val4Gly	p.V4G	ENST00000349310	NM_001014432.1	4	gTg/gGg																																																																															
BARD1	580	MSKCC	GRCh37	2	215657063	215657063	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000542-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	246	452	0	ENST00000260947.4:c.322delT	p.Cys108ValfsTer16	p.C108Vfs*16	ENST00000260947	NM_000465.2	108	Tgt/gt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			160	22	319	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			293	49	237	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828102	243828102	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			540	84	299	0	ENST00000263826.5:c.256A>T	p.Thr86Ser	p.T86S	ENST00000263826	NM_005465.4	86	Aca/Tca																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99181109	99181109	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757028003		P-0000561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			146	21	193	0	ENST00000074304.5:c.2050G>A	p.Ala684Thr	p.A684T	ENST00000074304	NM_001134224.1	684	Gcc/Acc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212568896	212568896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			370	40	249	0	ENST00000342788.4:c.1222C>T	p.Pro408Ser	p.P408S	ENST00000342788	NM_005235.2	408	Cca/Tca																																																																															
CUL3	8452	MSKCC	GRCh37	2	225370767	225370767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	42	265	0	ENST00000264414.4:c.1112C>T	p.Ala371Val	p.A371V	ENST00000264414	NM_003590.4	371	gCg/gTg																																																																															
SDHA	6389	MSKCC	GRCh37	5	228402	228402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			274	47	297	1	ENST00000264932.6:c.724G>A	p.Gly242Arg	p.G242R	ENST00000264932	NM_004168.2	242	Ggg/Agg																																																																															
APC	324	MSKCC	GRCh37	5	112173572	112173572	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			261	44	237	0	ENST00000257430.4:c.2281G>T	p.Glu761Ter	p.E761*	ENST00000257430	NM_000038.5	761	Gaa/Taa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517592	176517592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	31	406	1	ENST00000292408.4:c.293G>A	p.Arg98His	p.R98H	ENST00000292408	NM_213647.1	98	cGc/cAc																																																																															
RET	5979	MSKCC	GRCh37	10	43601863	43601863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			157	24	270	0	ENST00000355710.3:c.907G>A	p.Val303Met	p.V303M	ENST00000355710	NM_020975.4	303	Gtg/Atg																																																																															
ATM	472	MSKCC	GRCh37	11	108168020	108168020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	68	181	0	ENST00000278616.4:c.4916C>T	p.Pro1639Leu	p.P1639L	ENST00000278616	NM_000051.3	1639	cCg/cTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2115530	2115530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	34	415	0	ENST00000219476.3:c.1610G>A	p.Arg537His	p.R537H	ENST00000219476	NM_000548.3	537	cGc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779452	3779452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			114	21	332	1	ENST00000262367.5:c.5596C>T	p.Arg1866Cys	p.R1866C	ENST00000262367	NM_004380.2	1866	Cgc/Tgc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89858883	89858883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	13	165	0	ENST00000389301.3:c.1079G>A	p.Arg360His	p.R360H	ENST00000389301	NM_000135.2	360	cGc/cAc																																																																															
YES1	7525	MSKCC	GRCh37	18	724596	724596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	29	294	0	ENST00000314574.4:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000314574	NM_005433.3	487	cGa/cAa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222379	2222379	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201872028		P-0000561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			80	13	152	0	ENST00000398665.3:c.3211G>A	p.Ala1071Thr	p.A1071T	ENST00000398665	NM_032482.2	1071	Gcc/Acc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101925	11101925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			100	15	197	0	ENST00000344626.4:c.1345G>A	p.Glu449Lys	p.E449K	ENST00000344626	NM_003072.3	449	Gag/Aag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922271	39922271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			240	16	340	0	ENST00000378444.4:c.3901G>A	p.Ala1301Thr	p.A1301T	ENST00000378444	NM_001123385.1	1301	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0000561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	39	298	0	ENST00000257430.4:c.4393_4394dupAG	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37672019	37672019	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			618	81	469	0	ENST00000447079.4:c.2808delT	p.Gln937LysfsTer9	p.Q937Kfs*9	ENST00000447079	NM_015083.1	935	aTt/at																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256769	19256769	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			122	15	156	0	ENST00000162023.5:c.944del	p.Pro315GlnfsTer?	p.P315Qfs*?	ENST00000162023		315	cCa/ca																																																																															
AXL	558	MSKCC	GRCh37	19	41743932	41743933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778012871		P-0000561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	33	516	0	ENST00000301178.4:c.874dup	p.His292ProfsTer47	p.H292Pfs*47	ENST00000301178	NM_021913.4	289	-/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0000561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			625	93	332	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0000616-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			977	641	331	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41268766	41268766	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000616-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			679	599	480	0	ENST00000349496.5:c.1004A>T	p.Lys335Ile	p.K335I	ENST00000349496	NM_001904.3	335	aAa/aTa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528031	157528031	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000616-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			295	84	154	0	ENST00000346085.5:c.5756T>A	p.Leu1919Gln	p.L1919Q	ENST00000346085	NM_020732.3	1919	cTg/cAg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245419	41245419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000616-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			697	308	481	0	ENST00000357654.3:c.2129C>T	p.Thr710Ile	p.T710I	ENST00000357654	NM_007294.3	710	aCt/aTt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216376	2216376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000616-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	101	286	0	ENST00000398665.3:c.2020C>T	p.Arg674Cys	p.R674C	ENST00000398665	NM_032482.2	674	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578244	7578261	+	inframe_deletion	In_Frame_Del	DEL	CGCAAATTTCCTTCCACT	CGCAAATTTCCTTCCACT	-			P-0000616-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	255	517	0	ENST00000269305.4:c.588_605delAGTGGAAGGAAATTTGCG	p.Gly199_Glu204del	p.G199_E204del	ENST00000269305	NM_001126112.2	196	cgAGTGGAAGGAAATTTGCGt/cgt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0000616-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	188	218	1	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482438	56482438	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0000656-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			383	79	366	0	ENST00000267101.3:c.986A>C	p.Lys329Thr	p.K329T	ENST00000267101	NM_001982.3	329	aAa/aCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0000656-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			425	95	331	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
EP300	2033	MSKCC	GRCh37	22	41574907	41574907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000656-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			691	129	570	0	ENST00000263253.7:c.7192G>A	p.Asp2398Asn	p.D2398N	ENST00000263253	NM_001429.3	2398	Gat/Aat																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852628	63852628	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1104	548	529	0	ENST00000279873.7:c.3406A>G	p.Asn1136Asp	p.N1136D	ENST00000279873	NM_032199.2	1136	Aat/Gat																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			471	431	413	1	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																															
NF1	4763	MSKCC	GRCh37	17	29665722	29665722	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0000659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			613	311	658	0	ENST00000358273.4:c.6820G>A	p.Ala2274Thr	p.A2274T	ENST00000358273	NM_001042492.2	2274	Gca/Aca																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44941836	44941838	+	frameshift_variant	Frame_Shift_Del	DEL	AGA	AGA	GC			P-0000659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	545	477	0	ENST00000377967.4:c.3160_3162delAGAinsGC	p.Arg1054AlafsTer29	p.R1054Afs*29	ENST00000377967	NM_021140.2	1054	AGA/GC																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71096227	71096227	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	159	118	0	ENST00000318789.4:c.530A>T	p.Gln177Leu	p.Q177L	ENST00000318789	NM_032682.5	177	cAg/cTg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30670958	30670958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			573	36	240	0	ENST00000376406.3:c.5788C>A	p.Arg1930Ser	p.R1930S	ENST00000376406	NM_014641.2	1930	Cgc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579347	7579352	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAGC	AGAAGC	CA			P-0000669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			176	126	196	0	ENST00000269305.4:c.335_340delGCTTCTinsTG	p.Gly112ValfsTer10	p.G112Vfs*10	ENST00000269305	NM_001126112.2	112	gGCTTCTtg/gTGtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			799	151	347	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0000682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			477	99	285	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0000682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			215	44	77	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65313289	65313289	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			604	159	482	0	ENST00000342505.4:c.1825G>T	p.Glu609Ter	p.E609*	ENST00000342505	NM_002227.2	609	Gaa/Taa																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551981	150551981	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1113	142	412	0	ENST00000369026.2:c.26T>C	p.Val9Ala	p.V9A	ENST00000369026	NM_021960.4	9	gTa/gCa																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202719	128202719	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			314	76	267	0	ENST00000341105.2:c.1001A>C	p.Lys334Thr	p.K334T	ENST00000341105	NM_032638.4	334	aAg/aCg																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0000682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			598	115	324	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
RAD52	5893	MSKCC	GRCh37	12	1023246	1023246	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs184776294		P-0000682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	63	203	0	ENST00000358495.3:c.1009G>A	p.Asp337Asn	p.D337N	ENST00000358495	NM_134424.2	337	Gat/Aat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911691	32911691	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			446	72	212	0	ENST00000380152.3:c.3199A>T	p.Thr1067Ser	p.T1067S	ENST00000380152		1067	Act/Tct																																																																															
RBM10	8241	MSKCC	GRCh37	X	47006893	47006893	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0000682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			143	88	152	0	ENST00000329236.7:c.13A>T	p.Arg5Ter	p.R5*	ENST00000329236	NM_001204466.1	5	Aga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173847	112173848	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0000682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	55	233	0	ENST00000257430.4:c.2563_2564dup	p.Arg856AsnfsTer6	p.R856Nfs*6	ENST00000257430	NM_000038.5	852	-/GA																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112292	115112293	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			41	31	50	0	ENST00000257566.3:c.1447dupA	p.Thr483AsnfsTer209	p.T483Nfs*209	ENST00000257566	NM_016569.3	483	acg/aAcg																																																																															
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0000699-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			569	213	337	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56491645	56491645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000699-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			450	186	238	0	ENST00000267101.3:c.2537G>T	p.Ser846Ile	p.S846I	ENST00000267101	NM_001982.3	846	aGt/aTt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95557629	95557629	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000699-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			637	231	332	0	ENST00000343455.3:c.5438A>G	p.Glu1813Gly	p.E1813G	ENST00000343455	NM_177438.2	1813	gAg/gGg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226290	2226290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000699-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	137	396	0	ENST00000398665.3:c.3770C>T	p.Ala1257Val	p.A1257V	ENST00000398665	NM_032482.2	1257	gCg/gTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117883	70117903	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGCGCAGGAAGCTCGC	GGCGGCGCGCAGGAAGCTCGC	-			P-0000699-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	65	180	0	ENST00000245479.2:c.353_373delCGGCGCGCAGGAAGCTCGCGG	p.Ala118_Ala124del	p.A118_A124del	ENST00000245479	NM_000346.3	117	caGGCGGCGCGCAGGAAGCTCGCg/cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0000737-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	85	193	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0000737-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			121	68	213	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0000737-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			101	72	84	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714388	40714388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000737-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	59	142	0	ENST00000373198.4:c.4009C>T	p.Arg1337Cys	p.R1337C	ENST00000373198	NM_133170.3	1337	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000756-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			254	147	434	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0000756-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			115	44	269	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162686	47162686	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000756-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			189	115	622	0	ENST00000409792.3:c.3440A>T	p.Gln1147Leu	p.Q1147L	ENST00000409792	NM_014159.6	1147	cAg/cTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057230	180057230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000756-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			66	42	186	0	ENST00000261937.6:c.508C>T	p.Arg170Cys	p.R170C	ENST00000261937	NM_182925.4	170	Cgc/Tgc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056113	26056113	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000756-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	117	278	0	ENST00000343677.2:c.544C>G	p.Pro182Ala	p.P182A	ENST00000343677	NM_005319.3	182	Ccc/Gcc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499739	8499739	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000756-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	81	394	0	ENST00000356435.5:c.2230A>C	p.Ile744Leu	p.I744L	ENST00000356435		744	Ata/Cta																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87482282	87482282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000756-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			194	106	470	0	ENST00000277120.3:c.1569G>T	p.Lys523Asn	p.K523N	ENST00000277120		523	aaG/aaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0000763-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			66	396	236	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0000763-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			212	337	339	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0000763-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			114	40	118	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691776	30691776	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000763-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			436	82	333	0	ENST00000359013.4:c.353A>G	p.Glu118Gly	p.E118G	ENST00000359013	NM_001024847.2	118	gAg/gGg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133805	55133805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000763-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			89	388	454	0	ENST00000257290.5:c.1018C>T	p.Arg340Trp	p.R340W	ENST00000257290	NM_006206.4	340	Cgg/Tgg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6043665	6043665	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000763-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			404	65	415	0	ENST00000265849.7:c.188T>C	p.Val63Ala	p.V63A	ENST00000265849	NM_000535.5	63	gTg/gCg																																																																															
BRAF	673	MSKCC	GRCh37	7	140454008	140454008	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000763-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			261	118	268	1	ENST00000288602.6:c.1720C>T	p.His574Tyr	p.H574Y	ENST00000288602	NM_004333.4	574	Cac/Tac																																																																															
TET1	80312	MSKCC	GRCh37	10	70332414	70332414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs771320434		P-0000763-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	505	434	0	ENST00000373644.4:c.319C>T	p.Arg107Ter	p.R107*	ENST00000373644	NM_030625.2	107	Cga/Tga																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266074	41266097	+	inframe_deletion	In_Frame_Del	DEL	ACTGGCAGCAACAGTCTTACCTGG	ACTGGCAGCAACAGTCTTACCTGG	-			P-0000763-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			178	180	330	0	ENST00000349496.5:c.74_97del	p.Trp25_Asp32del	p.W25_D32del	ENST00000349496	NM_001904.3	24	cACTGGCAGCAACAGTCTTACCTGGac/cac																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028690	12028690	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0000778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	141	306	0	ENST00000353533.5:c.891+2T>A		p.X297_splice	ENST00000353533	NM_003010.3	297																																																																																
RB1	5925	MSKCC	GRCh37	13	48941684	48941684	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000828-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			383	73	462	0	ENST00000267163.4:c.994G>C	p.Asp332His	p.D332H	ENST00000267163	NM_000321.2	332	Gat/Cat																																																																															
NF1	4763	MSKCC	GRCh37	17	29553661	29553661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000828-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			582	39	341	0	ENST00000358273.4:c.2210C>T	p.Thr737Ile	p.T737I	ENST00000358273	NM_001042492.2	737	aCa/aTa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45394805	45394805	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000828-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			275	47	310	0	ENST00000262160.6:c.544C>T	p.Arg182Ter	p.R182*	ENST00000262160	NM_005901.5	182	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000854-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			387	97	124	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0000854-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	145	183	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089710	27089710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000854-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			198	74	114	0	ENST00000324856.7:c.2666G>A	p.Gly889Asp	p.G889D	ENST00000324856	NM_006015.4	889	gGc/gAc																																																																															
RHOA	387	MSKCC	GRCh37	3	49412922	49412922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000854-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			387	99	241	0	ENST00000418115.1:c.101A>T	p.Tyr34Phe	p.Y34F	ENST00000418115	NM_001664.2	34	tAt/tTt																																																																															
MLL2	8085	MSKCC	GRCh37	12	49438191	49438191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000854-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	114	274	0	ENST00000301067.7:c.5078G>A	p.Arg1693Gln	p.R1693Q	ENST00000301067	NM_003482.3	1693	cGg/cAg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492608	56492608	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000854-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			238	108	110	0	ENST00000267101.3:c.2758G>C	p.Val920Leu	p.V920L	ENST00000267101	NM_001982.3	920	Gta/Cta																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858408	9858408	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000854-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	69	118	0	ENST00000330684.3:c.2993T>G	p.Val998Gly	p.V998G	ENST00000330684	NM_001134407.1	998	gTg/gGg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120173	70120173	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000854-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			150	50	110	0	ENST00000245479.2:c.1177del	p.Gln393SerfsTer10	p.Q393Sfs*10	ENST00000245479	NM_000346.3	392	tCc/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0000860-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	11	99	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000860-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			135	28	58	0	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519997		P-0000860-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			463	43	137	1	ENST00000269305.4:c.332T>C	p.Leu111Pro	p.L111P	ENST00000269305	NM_001126112.2	111	cTg/cCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			121	92	265	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12013691	12013691	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0000921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			70	151	276	0	ENST00000353533.5:c.634-1G>C		p.X212_splice	ENST00000353533	NM_003010.3	212																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0000978-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			379	9	375	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099406	157099426	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAGCAA	CAGCAGCAGCAGCAGCAGCAA	-	rs775084783		P-0000984-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			223	42	151	0	ENST00000346085.5:c.363_383del	p.Gln125_Gln131del	p.Q125_Q131del	ENST00000346085	NM_020732.3	115	CAGCAGCAGCAGCAGCAGCAA/-																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000984-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	393	286	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55138642	55138642	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143344944		P-0000984-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	128	287	0	ENST00000257290.5:c.1319C>T	p.Thr440Met	p.T440M	ENST00000257290	NM_006206.4	440	aCg/aTg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645934	67645934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000984-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			144	148	267	0	ENST00000264010.4:c.862C>T	p.His288Tyr	p.H288Y	ENST00000264010	NM_006565.3	288	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0000994-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	155	146	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0000994-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			407	134	344	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604756	48604756	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000994-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			387	147	304	0	ENST00000342988.3:c.1578A>C	p.Glu526Asp	p.E526D	ENST00000342988	NM_005359.5	526	gaA/gaC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001156-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			427	93	244	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0001156-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			146	27	192	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355574	15355574	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0001156-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			333	28	381	0	ENST00000263377.2:c.2159-1G>A		p.X720_splice	ENST00000263377	NM_058243.2	720																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	5832	311	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
ALK	238	MSKCC	GRCh37	2	29455301	29455301	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			34	341	348	0	ENST00000389048.3:c.2501T>C	p.Val834Ala	p.V834A	ENST00000389048	NM_004304.4	834	gTg/gCg																																																																															
PMS1	5378	MSKCC	GRCh37	2	190718731	190718731	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs146040262		P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			136	615	471	0	ENST00000441310.2:c.889C>G	p.Leu297Val	p.L297V	ENST00000441310	NM_000534.4	297	Ctg/Gtg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662745	227662745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			72	467	323	0	ENST00000305123.5:c.710G>T	p.Trp237Leu	p.W237L	ENST00000305123	NM_005544.2	237	tGg/tTg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794105	242794105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			151	183	388	0	ENST00000334409.5:c.623C>A	p.Pro208His	p.P208H	ENST00000334409	NM_005018.2	208	cCc/cAc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643372	52643372	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			89	504	618	0	ENST00000394830.3:c.2524G>T	p.Glu842Ter	p.E842*	ENST00000394830	NM_018313.4	842	Gag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81386551	81386551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			532	390	356	0	ENST00000222390.5:c.436G>T	p.Gly146Cys	p.G146C	ENST00000222390	NM_000601.4	146	Ggc/Tgc																																																																															
TET1	80312	MSKCC	GRCh37	10	70446141	70446141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	204	293	1	ENST00000373644.4:c.5081G>A	p.Arg1694His	p.R1694H	ENST00000373644	NM_030625.2	1694	cGc/cAc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870898	12870898	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200422211		P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			593	426	268	0	ENST00000228872.4:c.125C>T	p.Thr42Ile	p.T42I	ENST00000228872	NM_004064.3	42	aCc/aTc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495661	56495661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			670	144	285	0	ENST00000267101.3:c.3851C>T	p.Ala1284Val	p.A1284V	ENST00000267101	NM_001982.3	1284	gCa/gTa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858613	9858613	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	242	639	0	ENST00000330684.3:c.2788C>A	p.Leu930Ile	p.L930I	ENST00000330684	NM_001134407.1	930	Ctc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs757274881		P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			38	436	323	1	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141515	11141515	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			37	326	407	1	ENST00000344626.4:c.3492C>A	p.Asn1164Lys	p.N1164K	ENST00000344626	NM_003072.3	1164	aaC/aaA																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353917	15353917	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			10	81	106	0	ENST00000263377.2:c.2963A>T	p.Gln988Leu	p.Q988L	ENST00000263377	NM_058243.2	988	cAg/cTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40757404	40757404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	170	414	0	ENST00000373198.4:c.2894A>G	p.Asn965Ser	p.N965S	ENST00000373198	NM_133170.3	965	aAc/aGc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750521	41750522	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			295	307	380	0	ENST00000226382.2:c.106dup	p.Cys36LeufsTer10	p.C36Lfs*10	ENST00000226382	NM_003924.3	36	tgc/tTgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714439	40714441	+	missense_variant	Missense_Mutation	ONP	CCT	CCT	TCC			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			268	106	269	0	ENST00000373198.4:c.3956_3958delinsGGA	p.Gln1319_Val1320delinsArgMet	p.Q1319_V1320delinsRM	ENST00000373198	NM_133170.3	1319	cAGGtg/cGGAtg																																																																															
KDR	3791	MSKCC	GRCh37	4	55948775	55948775	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001196-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			620	184	450	0	ENST00000263923.4:c.3690G>C	p.Lys1230Asn	p.K1230N	ENST00000263923	NM_002253.2	1230	aaG/aaC																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524597	103524597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001196-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			688	85	539	0	ENST00000355739.4:c.2728C>T	p.His910Tyr	p.H910Y	ENST00000355739	NM_000123.3	910	Cat/Tat																																																																															
CDH1	999	MSKCC	GRCh37	16	68842351	68842351	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001196-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			891	54	687	0	ENST00000261769.5:c.412G>C	p.Glu138Gln	p.E138Q	ENST00000261769	NM_004360.3	138	Gaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519975		P-0001196-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			509	123	363	0	ENST00000269305.4:c.403T>C	p.Cys135Arg	p.C135R	ENST00000269305	NM_001126112.2	135	Tgc/Cgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			272	193	515	4	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782177		P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	125	699	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138409963	138409963	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	65	348	0	ENST00000289153.2:c.1915C>G	p.Leu639Val	p.L639V	ENST00000289153	NM_006219.2	639	Ctt/Gtt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540239	187540239	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			468	59	618	0	ENST00000441802.2:c.7501C>G	p.Leu2501Val	p.L2501V	ENST00000441802	NM_005245.3	2501	Cta/Gta																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38944651	38944651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			531	49	378	0	ENST00000357387.3:c.4810G>A	p.Asp1604Asn	p.D1604N	ENST00000357387	NM_152756.3	1604	Gat/Aat																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32171636	32171636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	38	475	0	ENST00000375023.3:c.3142G>A	p.Asp1048Asn	p.D1048N	ENST00000375023	NM_004557.3	1048	Gac/Aac																																																																															
MLL	4297	MSKCC	GRCh37	11	118344797	118344797	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			445	71	627	0	ENST00000534358.1:c.2923G>C	p.Asp975His	p.D975H	ENST00000534358	NM_005933.3	975	Gac/Cac																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14024740	14024740	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			505	84	404	0	ENST00000311895.7:c.966G>C	p.Gln322His	p.Q322H	ENST00000311895	NM_005236.2	322	caG/caC																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646591	23646591	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	50	355	0	ENST00000261584.4:c.1276G>C	p.Glu426Gln	p.E426Q	ENST00000261584	NM_024675.3	426	Gag/Cag																																																																															
JAK3	3718	MSKCC	GRCh37	19	17952321	17952321	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			486	48	464	0	ENST00000458235.1:c.1019C>G	p.Ser340Trp	p.S340W	ENST00000458235	NM_000215.3	340	tCg/tGg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735547	40735547	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	66	340	0	ENST00000373198.4:c.3326G>T	p.Arg1109Leu	p.R1109L	ENST00000373198	NM_133170.3	1109	cGg/cTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76855256	76855256	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			300	60	943	0	ENST00000373344.5:c.5731A>G	p.Ile1911Val	p.I1911V	ENST00000373344	NM_000489.3	1911	Ata/Gta																																																																															
STAG2	10735	MSKCC	GRCh37	X	123217317	123217317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			480	77	782	0	ENST00000218089.9:c.2971A>G	p.Ser991Gly	p.S991G	ENST00000218089	NM_001042749.1	991	Agc/Ggc																																																																															
APC	324	MSKCC	GRCh37	5	112174742	112174742	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001200-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	70	345	0	ENST00000257430.4:c.3451G>T	p.Glu1151Ter	p.E1151*	ENST00000257430	NM_000038.5	1151	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0001200-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			507	82	749	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112175536	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001200-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			717	42	457	0	ENST00000257430.4:c.4245del	p.Ser1415ArgfsTer4	p.S1415Rfs*4	ENST00000257430	NM_000038.5	1415	agT/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0001227-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			962	62	452	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001227-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	28	176	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131972824	131972824	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001227-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			622	36	305	0	ENST00000265335.6:c.3407A>G	p.His1136Arg	p.H1136R	ENST00000265335		1136	cAc/cGc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530055	212530055	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001230-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	159	272	0	ENST00000342788.4:c.1864A>T	p.Thr622Ser	p.T622S	ENST00000342788	NM_005235.2	622	Acc/Tcc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37048544	37048544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001230-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	136	331	0	ENST00000231790.2:c.443C>T	p.Thr148Ile	p.T148I	ENST00000231790	NM_000249.3	148	aCc/aTc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519972		P-0001230-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	193	529	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519886		P-0001244-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			606	236	241	0	ENST00000349496.5:c.97T>C	p.Ser33Pro	p.S33P	ENST00000349496	NM_001904.3	33	Tct/Cct																																																																															
TET1	80312	MSKCC	GRCh37	10	70404893	70404893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001263-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	215	307	0	ENST00000373644.4:c.2407G>A	p.Ala803Thr	p.A803T	ENST00000373644	NM_030625.2	803	Gct/Act																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14028135	14028135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001263-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			517	62	197	0	ENST00000311895.7:c.1189G>A	p.Glu397Lys	p.E397K	ENST00000311895	NM_005236.2	397	Gag/Aag																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66518960	66518960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001263-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			801	255	313	0	ENST00000358598.2:c.241G>A	p.Glu81Lys	p.E81K	ENST00000358598	NM_212471.2	81	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0001296-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			216	175	276	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0001296-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	39	248	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45391499	45391499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001296-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			272	43	342	0	ENST00000262160.6:c.661C>T	p.Pro221Ser	p.P221S	ENST00000262160	NM_005901.5	221	Cca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7579359	7579359	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587780066		P-0001331-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			106	17	371	0	ENST00000269305.4:c.328del	p.Arg110ValfsTer13	p.R110Vfs*13	ENST00000269305	NM_001126112.2	110	Cgt/gt																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14038659	14038659	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs2020955		P-0001331-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			108	11	274	0	ENST00000311895.7:c.1984T>C	p.Ser662Pro	p.S662P	ENST00000311895	NM_005236.2	662	Tct/Cct																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524525	187524525	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35670235		P-0001331-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			86	12	539	0	ENST00000441802.2:c.11155G>A	p.Val3719Met	p.V3719M	ENST00000441802	NM_005245.3	3719	Gtg/Atg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233204	46233204	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139689510		P-0001331-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	12	566	0	ENST00000334344.6:c.1423C>T	p.His475Tyr	p.H475Y	ENST00000334344	NM_152641.2	475	Cat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs770776262		P-0001331-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			98	27	372	0	ENST00000269305.4:c.321C>A	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0001370-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			109	150	423	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984021	2984021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001370-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	119	507	1	ENST00000396946.4:c.509G>T	p.Arg170Leu	p.R170L	ENST00000396946	NM_032415.4	170	cGc/cTc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250061	110250061	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001370-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			71	78	272	0	ENST00000374672.4:c.614G>C	p.Arg205Pro	p.R205P	ENST00000374672	NM_004235.4	205	cGg/cCg																																																																															
MLL	4297	MSKCC	GRCh37	11	118307529	118307529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001370-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	49	316	0	ENST00000534358.1:c.302C>T	p.Ser101Leu	p.S101L	ENST00000534358	NM_005933.3	101	tCa/tTa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39593437	39593437	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001370-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	51	180	0	ENST00000262039.4:c.1202A>G	p.Gln401Arg	p.Q401R	ENST00000262039	NM_002647.2	401	cAg/cGg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11113836	11113836	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0001370-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			72	106	206	0	ENST00000344626.4:c.1943+1G>T		p.X648_splice	ENST00000344626	NM_003072.3	648																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41100950	41100950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001370-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			125	62	222	2	ENST00000373198.4:c.1406G>T	p.Gly469Val	p.G469V	ENST00000373198	NM_133170.3	469	gGc/gTc																																																																															
AR	367	MSKCC	GRCh37	X	66931503	66931503	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001370-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			53	43	193	0	ENST00000374690.3:c.2145C>G	p.His715Gln	p.H715Q	ENST00000374690	NM_000044.3	715	caC/caG																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056189	27056189	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0001415-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	103	278	0	ENST00000324856.7:c.1185T>A	p.Tyr395Ter	p.Y395*	ENST00000324856	NM_006015.4	395	taT/taA																																																																															
ALK	238	MSKCC	GRCh37	2	30142909	30142909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001415-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			216	25	353	0	ENST00000389048.3:c.617C>T	p.Ala206Val	p.A206V	ENST00000389048	NM_004304.4	206	gCg/gTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111512	8111513	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001415-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			436	298	451	0	ENST00000346208.3:c.999dupT	p.Gly334TrpfsTer18	p.G334Wfs*18	ENST00000346208		333	aat/aaTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001445-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			109	236	185	0	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																																																															
RB1	5925	MSKCC	GRCh37	13	48955423	48955424	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0001445-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	96	266	0	ENST00000267163.4:c.1540_1541delTT	p.Phe514ProfsTer8	p.F514Pfs*8	ENST00000267163	NM_000321.2	513	tcTTtc/tctc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060853	38060859	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCCGT	AAGCCGT	-			P-0001445-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			463	607	431	0	ENST00000250448.2:c.1130_1136delACGGCTT	p.His377ArgfsTer10	p.H377Rfs*10	ENST00000250448	NM_004496.3	377	cACGGCTTg/cg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			120	88	299	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CD274	29126	MSKCC	GRCh37	9	5457134	5457134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	96	241	16	ENST00000381577.3:c.108G>A	p.Met36Ile	p.M36I	ENST00000381577	NM_014143.3	36	atG/atA																																																																															
ABL1	25	MSKCC	GRCh37	9	133759553	133759553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			715	96	567	0	ENST00000318560.5:c.1876G>A	p.Gly626Ser	p.G626S	ENST00000318560	NM_005157.4	626	Ggc/Agc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31387080	31387080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			800	102	403	0	ENST00000328111.2:c.1705G>A	p.Ala569Thr	p.A569T	ENST00000328111	NM_006892.3	569	Gca/Aca																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112637	115112637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			145	67	267	0	ENST00000257566.3:c.1103del	p.Leu368TyrfsTer264	p.L368Yfs*264	ENST00000257566	NM_016569.3	368	tTa/ta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0001481-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			106	38	116	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68847379	68847380	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0001481-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	154	385	0	ENST00000261769.5:c.1302dup	p.Ile435HisfsTer11	p.I435Hfs*11	ENST00000261769	NM_004360.3	434	ggc/ggCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001503-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			317	43	245	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217162	66217162	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001503-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	55	362	0	ENST00000273854.3:c.2453A>G	p.Asp818Gly	p.D818G	ENST00000273854	NM_004439.5	818	gAc/gGc																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944946	31944946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001503-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			147	29	141	0	ENST00000340398.3:c.155G>A	p.Arg52His	p.R52H	ENST00000340398	NM_001013699.2	52	cGt/cAt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115111972	115111973	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGAGGCC			P-0001503-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	13	154	0	ENST00000257566.3:c.1761_1767dup	p.Gln590GlyfsTer104	p.Q590Gfs*104	ENST00000257566	NM_016569.3	589	-/GGCCTCT																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120708	115120709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0001503-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	73	570	0	ENST00000257566.3:c.296_297dupTG	p.Glu100TrpfsTer40	p.E100Wfs*40	ENST00000257566	NM_016569.3	99	-/TG																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0001503-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			125	14	221	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																																
CDH1	999	MSKCC	GRCh37	16	68847257	68847273	+	frameshift_variant	Frame_Shift_Del	DEL	CACCACACTGAAAGTGA	CACCACACTGAAAGTGA	-			P-0001503-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			197	25	313	0	ENST00000261769.5:c.1180_1196del	p.Thr394Ter	p.T394*	ENST00000261769	NM_004360.3	393	atCACCACACTGAAAGTGAct/atct																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164686	36164686	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001503-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			280	44	432	0	ENST00000300305.3:c.1189del	p.Gln397LysfsTer197	p.Q397Kfs*197	ENST00000300305		397	Caa/aa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64574693	64574693	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0001526-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			67	120	346	0	ENST00000337652.1:c.799-2A>G		p.X267_splice	ENST00000337652	NM_130803.2	267																																																																																
CCND1	595	MSKCC	GRCh37	11	69457820	69457822	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0001526-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	82	308	0	ENST00000227507.2:c.227_229del	p.Glu76del	p.E76del	ENST00000227507	NM_053056.2	74	GAG/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0001536-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	51	341	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0001546-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			402	134	293	1	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001566-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			944	64	284	1	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482437	56482437	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001589-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			672	714	339	1	ENST00000267101.3:c.985A>G	p.Lys329Glu	p.K329E	ENST00000267101	NM_001982.3	329	Aaa/Gaa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879794	37879794	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001589-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			720	158	224	0	ENST00000269571.5:c.2089G>C	p.Val697Leu	p.V697L	ENST00000269571		697	Gtg/Ctg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206649640	206649640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001643-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			378	78	166	0	ENST00000367120.3:c.475G>A	p.Gly159Ser	p.G159S	ENST00000367120	NM_014002.3	159	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579569	7579575	+	frameshift_variant	Frame_Shift_Del	DEL	TTGCTTG	TTGCTTG	-			P-0001643-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			180	116	242	1	ENST00000269305.4:c.112_118del	p.Gln38TrpfsTer4	p.Q38Wfs*4	ENST00000269305	NM_001126112.2	38	CAAGCAAtg/tg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0001647-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			615	362	568	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001647-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			445	241	411	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174379	112174379	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0001647-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	80	360	0	ENST00000257430.4:c.3088A>T	p.Lys1030Ter	p.K1030*	ENST00000257430	NM_000038.5	1030	Aaa/Taa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40980832	40980832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001647-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			863	486	515	1	ENST00000373198.4:c.1654C>T	p.Leu552Phe	p.L552F	ENST00000373198	NM_133170.3	552	Ctc/Ttc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0001734-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			683	163	558	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0001734-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			405	21	296	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0001734-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			635	40	715	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0001734-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			590	150	671	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0001734-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			491	63	424	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245976	5245976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001734-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			377	24	684	0	ENST00000357368.4:c.799G>A	p.Val267Met	p.V267M	ENST00000357368	NM_002850.3	267	Gtg/Atg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291846	15291846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001734-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	64	529	0	ENST00000263388.2:c.2920G>A	p.Gly974Arg	p.G974R	ENST00000263388	NM_000435.2	974	Ggg/Agg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375045	31375045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001734-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			418	87	489	0	ENST00000328111.2:c.442C>T	p.Arg148Trp	p.R148W	ENST00000328111	NM_006892.3	148	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0001767-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			378	860	466	2	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288967	212288967	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001767-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			487	515	480	0	ENST00000342788.4:c.2779C>T	p.Arg927Ter	p.R927*	ENST00000342788	NM_005235.2	927	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0001767-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1179	364	410	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112155042	112155042	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0001767-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			412	204	320	0	ENST00000257430.4:c.1312+1G>A		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001767-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			528	235	379	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																															
ATM	472	MSKCC	GRCh37	11	108163405	108163405	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001767-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			601	309	473	0	ENST00000278616.4:c.4496G>T	p.Ser1499Ile	p.S1499I	ENST00000278616	NM_000051.3	1499	aGt/aTt																																																																															
ATRX	546	MSKCC	GRCh37	X	76937769	76937770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001767-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1508	270	576	1	ENST00000373344.5:c.2978dup	p.Lys994GlufsTer6	p.K994Efs*6	ENST00000373344	NM_000489.3	993	aag/aaAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577126	7577126	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001776-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			543	55	459	0	ENST00000269305.4:c.812A>T	p.Glu271Val	p.E271V	ENST00000269305	NM_001126112.2	271	gAg/gTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			886	177	506	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0001777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			528	119	433	1	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001784-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			451	323	399	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0001784-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			73	200	285	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522597	176522597	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200766146		P-0001784-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	115	393	2	ENST00000292408.4:c.1694G>A	p.Arg565Gln	p.R565Q	ENST00000292408	NM_213647.1	565	cGg/cAg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21555603	21555603	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0001784-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	133	386	0	ENST00000382592.4:c.2665+2T>A		p.X889_splice	ENST00000382592	NM_014572.2	889																																																																																
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			197	69	507	0	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661316	227661316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			197	46	482	0	ENST00000305123.5:c.2139C>A	p.His713Gln	p.H713Q	ENST00000305123	NM_005544.2	713	caC/caA																																																																															
MLH1	4292	MSKCC	GRCh37	3	37050389	37050389	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			180	64	464	0	ENST00000231790.2:c.538G>T	p.Val180Phe	p.V180F	ENST00000231790	NM_000249.3	180	Gtt/Ttt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55153670	55153670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			240	28	554	0	ENST00000257290.5:c.2636G>A	p.Trp879Ter	p.W879*	ENST00000257290	NM_006206.4	879	tGg/tAg																																																																															
NPM1	4869	MSKCC	GRCh37	5	170834713	170834713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	43	473	0	ENST00000296930.5:c.781C>T	p.Leu261Phe	p.L261F	ENST00000296930	NM_002520.6	261	Ctt/Ttt																																																																															
MLL2	8085	MSKCC	GRCh37	12	49426075	49426075	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			257	21	358	0	ENST00000301067.7:c.12413C>A	p.Ser4138Tyr	p.S4138Y	ENST00000301067	NM_003482.3	4138	tCt/tAt																																																																															
YES1	7525	MSKCC	GRCh37	18	736915	736915	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			221	69	591	0	ENST00000314574.4:c.1184G>T	p.Arg395Leu	p.R395L	ENST00000314574	NM_005433.3	395	cGa/cTa																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867709	45867709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200895828		P-0001787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			233	80	495	1	ENST00000391945.4:c.691G>A	p.Val231Met	p.V231M	ENST00000391945	NM_000400.3	231	Gtg/Atg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624868	9624868	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			178	62	502	0	ENST00000353224.5:c.109C>A	p.Gln37Lys	p.Q37K	ENST00000353224	NM_177990.2	37	Cag/Aag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922100	39922100	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	18	647	0	ENST00000378444.4:c.4072T>A	p.Ser1358Thr	p.S1358T	ENST00000378444	NM_001123385.1	1358	Tcc/Acc																																																																															
AR	367	MSKCC	GRCh37	X	66937445	66937445	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			188	27	535	0	ENST00000374690.3:c.2299C>A	p.Pro767Thr	p.P767T	ENST00000374690	NM_000044.3	767	Cct/Act																																																																															
STK11	6794	MSKCC	GRCh37	19	1221320	1221320	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			176	55	407	0	ENST00000326873.7:c.843delG	p.Leu282SerfsTer5	p.L282Sfs*5	ENST00000326873	NM_000455.4	281	ccG/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001797-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			101	26	319	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254929	16254929	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001797-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	82	433	4	ENST00000375759.3:c.2194C>T	p.Arg732Ter	p.R732*	ENST00000375759	NM_015001.2	732	Cga/Tga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382152	152382154	+	inframe_deletion	In_Frame_Del	DEL	TGG	TGG	-			P-0001797-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	75	507	0	ENST00000206249.3:c.1265_1267del	p.Val422del	p.V422del	ENST00000206249	NM_000125.3	421	aTGGtg/atg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0001797-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	145	382	0	ENST00000346208.3:c.1299_1300dupCC	p.His434ProfsTer42	p.H434Pfs*42	ENST00000346208		433	cac/caCCc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0001891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	41	167	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520776	176520776	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0001891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			66	214	196	0	ENST00000292408.4:c.1519G>T	p.Asp507Tyr	p.D507Y	ENST00000292408	NM_213647.1	507	Gac/Tac																																																																															
PIM1	5292	MSKCC	GRCh37	6	37140778	37140778	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			155	266	226	1	ENST00000373509.5:c.614G>T	p.Arg205Leu	p.R205L	ENST00000373509	NM_002648.3	205	cGa/cTa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739097	145739097	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0001891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			279	114	128	0	ENST00000428558.2:c.2059-1G>A		p.X687_splice	ENST00000428558	NM_004260.3	687																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8341727	8341727	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			299	435	337	0	ENST00000356435.5:c.4913G>T	p.Gly1638Val	p.G1638V	ENST00000356435		1638	gGa/gTa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518121	103518121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			154	135	179	0	ENST00000355739.4:c.2059G>A	p.Gly687Arg	p.G687R	ENST00000355739	NM_000123.3	687	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577084	7577084	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			122	207	258	0	ENST00000269305.4:c.854A>T	p.Glu285Val	p.E285V	ENST00000269305	NM_001126112.2	285	gAg/gTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101079	41101079	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			175	243	257	0	ENST00000373198.4:c.1277A>G	p.Tyr426Cys	p.Y426C	ENST00000373198	NM_133170.3	426	tAc/tGc																																																																															
STK11	6794	MSKCC	GRCh37	19	1222996	1223003	+	frameshift_variant	Frame_Shift_Del	DEL	GAAACATC	GAAACATC	-			P-0001891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			55	135	125	0	ENST00000326873.7:c.933_940del	p.Lys311AsnfsTer4	p.K311Nfs*4	ENST00000326873	NM_000455.4	311	aaGAAACATCct/aact																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	347	374	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138452225	138452225	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			812	133	434	0	ENST00000289153.2:c.1028T>G	p.Leu343Arg	p.L343R	ENST00000289153	NM_006219.2	343	cTt/cGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628545	187628545	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	120	412	0	ENST00000441802.2:c.2437G>C	p.Val813Leu	p.V813L	ENST00000441802	NM_005245.3	813	Gtc/Ctc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117737472	117737472	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			860	73	338	0	ENST00000368508.3:c.177A>T	p.Gln59His	p.Q59H	ENST00000368508	NM_002944.2	59	caA/caT																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206845	162206845	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			710	176	336	0	ENST00000366898.1:c.830T>G	p.Phe277Cys	p.F277C	ENST00000366898	NM_004562.2	277	tTt/tGt																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538846	23538846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	111	318	1	ENST00000380871.4:c.593C>T	p.Pro198Leu	p.P198L	ENST00000380871	NM_006167.3	198	cCg/cTg																																																																															
MYC	4609	MSKCC	GRCh37	8	128750936	128750936	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	120	329	0	ENST00000377970.2:c.473A>C	p.Lys158Thr	p.K158T	ENST00000377970	NM_002467.4	158	aAg/aCg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484264	8484264	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			888	105	415	0	ENST00000356435.5:c.3268A>T	p.Asn1090Tyr	p.N1090Y	ENST00000356435		1090	Aac/Tac																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500448	99500448	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	93	348	0	ENST00000268035.6:c.3881A>T	p.Asp1294Val	p.D1294V	ENST00000268035	NM_000875.3	1294	gAc/gTc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266069	41266101	+	inframe_deletion	In_Frame_Del	DEL	TAGTCACTGGCAGCAACAGTCTTACCTGGACTC	TAGTCACTGGCAGCAACAGTCTTACCTGGACTC	-			P-0001949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	424	389	0	ENST00000349496.5:c.67_99del	p.Ser23_Ser33del	p.S23_S33del	ENST00000349496	NM_001904.3	22	gtTAGTCACTGGCAGCAACAGTCTTACCTGGACTCt/gtt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391039	139391047	+	inframe_deletion	In_Frame_Del	DEL	CTGCTGGGT	CTGCTGGGT	-			P-0001949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	61	292	0	ENST00000277541.6:c.7144_7152del	p.Thr2382_Gln2384del	p.T2382_Q2384del	ENST00000277541	NM_017617.3	2382	ACCCAGCAG/-																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0001972-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	201	378	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0001972-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			141	267	312	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673769	30673769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001972-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	70	328	0	ENST00000376406.3:c.3191C>T	p.Pro1064Leu	p.P1064L	ENST00000376406	NM_014641.2	1064	cCg/cTg																																																																															
MLL2	8085	MSKCC	GRCh37	12	49425853	49425853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001972-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	81	312	1	ENST00000301067.7:c.12635G>A	p.Arg4212Gln	p.R4212Q	ENST00000301067	NM_003482.3	4212	cGg/cAg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103520577	103520577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001972-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	208	419	0	ENST00000355739.4:c.2648G>T	p.Gly883Val	p.G883V	ENST00000355739	NM_000123.3	883	gGg/gTg																																																																															
BLM	641	MSKCC	GRCh37	15	91312768	91312768	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001972-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			585	98	440	0	ENST00000355112.3:c.2507G>T	p.Arg836Met	p.R836M	ENST00000355112	NM_000057.2	836	aGg/aTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098588	11098588	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001972-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			300	201	202	0	ENST00000344626.4:c.1106A>T	p.Glu369Val	p.E369V	ENST00000344626	NM_003072.3	369	gAg/gTg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39744979	39744979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001972-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	221	414	0	ENST00000361337.2:c.1769G>A	p.Arg590His	p.R590H	ENST00000361337	NM_003286.2	590	cGt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249013	55249014	+	protein_altering_variant	In_Frame_Ins	INS	-	-	GCACCC			P-0001972-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	3617	314	7	ENST00000275493.2:c.2311_2312insGCACCC	p.Asn771delinsSerThrHis	p.N771delinsSTH	ENST00000275493	NM_005228.3	771	aac/aGCACCCac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212483982	212483982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002046-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	54	462	0	ENST00000342788.4:c.2221G>A	p.Gly741Arg	p.G741R	ENST00000342788	NM_005235.2	741	Gga/Aga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134644679	134644679	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773064927		P-0002046-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			542	41	429	0	ENST00000398015.3:c.80C>T	p.Thr27Met	p.T27M	ENST00000398015	NM_004441.4	27	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			361	154	305	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106078	27106078	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			267	114	254	0	ENST00000324856.7:c.5693delC	p.Pro1898HisfsTer25	p.P1898Hfs*25	ENST00000324856	NM_006015.4	1897	Ccc/cc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101099	27101099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	137	417	0	ENST00000324856.7:c.4381C>T	p.Arg1461Ter	p.R1461*	ENST00000324856	NM_006015.4	1461	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913288		P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			451	161	425	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45394805	45394805	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			435	204	347	1	ENST00000262160.6:c.544C>T	p.Arg182Ter	p.R182*	ENST00000262160	NM_005901.5	182	Cga/Tga																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2491273	2491273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			221	123	276	0	ENST00000355716.4:c.316C>T	p.Arg106Cys	p.R106C	ENST00000355716	NM_003820.2	106	Cgc/Tgc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11273611	11273611	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			215	73	223	0	ENST00000361445.4:c.3130A>G	p.Met1044Val	p.M1044V	ENST00000361445	NM_004958.3	1044	Atg/Gtg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65316543	65316543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			311	129	293	1	ENST00000342505.4:c.1699G>A	p.Val567Ile	p.V567I	ENST00000342505	NM_002227.2	567	Gtc/Atc																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719178	61719178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			382	133	363	0	ENST00000401558.2:c.1879C>T	p.Pro627Ser	p.P627S	ENST00000401558	NM_003400.3	627	Cct/Tct																																																																															
CASP8	841	MSKCC	GRCh37	2	202149795	202149795	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	57	400	0	ENST00000358485.4:c.1236A>C	p.Lys412Asn	p.K412N	ENST00000358485	NM_001080125.1	412	aaA/aaC																																																																															
IDH1	3417	MSKCC	GRCh37	2	209103931	209103931	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	78	357	0	ENST00000345146.2:c.1018T>G	p.Leu340Val	p.L340V	ENST00000345146	NM_005896.2	340	Tta/Gta																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278118	41278118	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			525	37	387	0	ENST00000349496.5:c.1994A>G	p.Asp665Gly	p.D665G	ENST00000349496	NM_001904.3	665	gAc/gGc																																																																															
MITF	4286	MSKCC	GRCh37	3	69928347	69928347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	158	269	0	ENST00000352241.4:c.167G>A	p.Arg56His	p.R56H	ENST00000352241	NM_198159.2	56	cGc/cAc																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182681721	182681721	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			457	170	383	0	ENST00000292782.4:c.337A>C	p.Thr113Pro	p.T113P	ENST00000292782	NM_020640.2	113	Aca/Cca																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750572	41750572	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			240	100	379	2	ENST00000226382.2:c.56C>A	p.Ala19Asp	p.A19D	ENST00000226382	NM_003924.3	19	gCt/gAt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111711	56111711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			55	23	22	0	ENST00000399503.3:c.311G>A	p.Gly104Asp	p.G104D	ENST00000399503	NM_005921.1	104	gGc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112154998	112154998	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			428	160	383	0	ENST00000257430.4:c.1269G>A	p.Trp423Ter	p.W423*	ENST00000257430	NM_000038.5	423	tgG/tgA																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149509457	149509457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			281	100	400	0	ENST00000261799.4:c.1442C>T	p.Thr481Met	p.T481M	ENST00000261799	NM_002609.3	481	aCg/aTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707573	176707573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	27	341	0	ENST00000439151.2:c.5630G>A	p.Arg1877His	p.R1877H	ENST00000439151	NM_022455.4	1877	cGt/cAt																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402537	20402537	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	52	140	1	ENST00000346618.3:c.74T>C	p.Val25Ala	p.V25A	ENST00000346618	NM_001949.4	25	gTc/gCc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005337	150005337	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			352	103	451	1	ENST00000253339.5:c.888G>A	p.Trp296Ter	p.W296*	ENST00000253339		296	tgG/tgA																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419955	152419955	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182943916		P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			292	99	308	0	ENST00000206249.3:c.1642C>T	p.Arg548Cys	p.R548C	ENST00000206249	NM_000125.3	548	Cgc/Tgc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157469823	157469823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	107	379	2	ENST00000346085.5:c.2617G>A	p.Gly873Ser	p.G873S	ENST00000346085	NM_020732.3	873	Ggt/Agt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396316	139396316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			207	115	362	0	ENST00000277541.6:c.5522G>A	p.Arg1841Gln	p.R1841Q	ENST00000277541	NM_017617.3	1841	cGg/cAg																																																																															
RET	5979	MSKCC	GRCh37	10	43601972	43601972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	99	375	1	ENST00000355710.3:c.1016C>T	p.Ser339Leu	p.S339L	ENST00000355710	NM_020975.4	339	tCg/tTg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625281	69625281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35983315		P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	50	385	1	ENST00000334134.2:c.512G>A	p.Arg171His	p.R171H	ENST00000334134	NM_005247.2	171	cGc/cAc																																																																															
MLL	4297	MSKCC	GRCh37	11	118392082	118392082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200134640		P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			278	139	363	0	ENST00000534358.1:c.11593G>A	p.Val3865Ile	p.V3865I	ENST00000534358	NM_005933.3	3865	Gtc/Atc																																																																															
POLE	5426	MSKCC	GRCh37	12	133218912	133218912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	121	370	0	ENST00000320574.5:c.5024G>A	p.Arg1675His	p.R1675H	ENST00000320574	NM_006231.2	1675	cGc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133254004	133254004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			270	142	345	0	ENST00000320574.5:c.746G>A	p.Arg249Gln	p.R249Q	ENST00000320574	NM_006231.2	249	cGa/cAa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514619	103514619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			343	104	226	0	ENST00000355739.4:c.1120G>A	p.Ala374Thr	p.A374T	ENST00000355739	NM_000123.3	374	Gca/Aca																																																																															
TSHR	7253	MSKCC	GRCh37	14	81554314	81554314	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			390	143	442	0	ENST00000298171.2:c.334A>G	p.Arg112Gly	p.R112G	ENST00000298171	NM_000369.2	112	Agg/Ggg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89825003	89825003	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			358	130	399	1	ENST00000389301.3:c.2963T>C	p.Leu988Pro	p.L988P	ENST00000389301	NM_000135.2	988	cTg/cCg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7989529	7989529	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			135	55	154	0	ENST00000319144.4:c.157T>C	p.Tyr53His	p.Y53H	ENST00000319144	NM_001139.2	53	Tac/Cac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435372	56435372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			234	112	251	0	ENST00000407977.2:c.1765C>T	p.Pro589Ser	p.P589S	ENST00000407977		589	Cca/Tca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440912	56440912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			349	136	408	0	ENST00000407977.2:c.425C>T	p.Thr142Ile	p.T142I	ENST00000407977		142	aCt/aTt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118988	70118988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	93	353	1	ENST00000245479.2:c.560C>T	p.Ala187Val	p.A187V	ENST00000245479	NM_000346.3	187	gCg/gTg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78935205	78935205	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138318172		P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			190	83	315	0	ENST00000306801.3:c.3617C>T	p.Thr1206Met	p.T1206M	ENST00000306801	NM_020761.2	1206	aCg/aTg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395776	45395776	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			369	158	244	0	ENST00000262160.6:c.358C>T	p.Arg120Ter	p.R120*	ENST00000262160	NM_005901.5	120	Cga/Tga																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216358	2216358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	83	301	0	ENST00000398665.3:c.2002G>A	p.Ala668Thr	p.A668T	ENST00000398665	NM_032482.2	668	Gcc/Acc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262079	10262079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	120	399	2	ENST00000340748.4:c.2212G>A	p.Val738Ile	p.V738I	ENST00000340748		738	Gtc/Atc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290214	15290214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	131	324	0	ENST00000263388.2:c.3421G>A	p.Val1141Met	p.V1141M	ENST00000263388	NM_000435.2	1141	Gtg/Atg																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30309510	30309510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			517	57	385	3	ENST00000307677.4:c.512C>T	p.Ala171Val	p.A171V	ENST00000307677	NM_138578.1	171	gCc/gTc																																																																															
EP300	2033	MSKCC	GRCh37	22	41573302	41573302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			268	126	395	0	ENST00000263253.7:c.5587C>T	p.Pro1863Ser	p.P1863S	ENST00000263253	NM_001429.3	1863	Cca/Tca																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156742	20156742	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			407	151	355	0	ENST00000379607.5:c.17-2A>G		p.X6_splice	ENST00000379607	NM_001412.3	6																																																																																
BCOR	54880	MSKCC	GRCh37	X	39930411	39930411	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs751015767		P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	82	218	0	ENST00000378444.4:c.3053G>A	p.Arg1018His	p.R1018H	ENST00000378444	NM_001123385.1	1018	cGt/cAt																																																																															
GATA1	2623	MSKCC	GRCh37	X	48651631	48651631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			245	118	467	0	ENST00000376670.3:c.797C>T	p.Thr266Met	p.T266M	ENST00000376670	NM_002049.3	266	aCg/aTg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48032153	48032154	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	127	393	1	ENST00000234420.5:c.3545_3546dup	p.Ile1183GlufsTer2	p.I1183Efs*2	ENST00000234420	NM_000179.2	1181	-/AG																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39644789	39644789	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			471	101	302	0	ENST00000262039.4:c.2522del	p.Lys841ArgfsTer8	p.K841Rfs*8	ENST00000262039	NM_002647.2	840	Aaa/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0002049-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			500	218	386	3	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002056-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	468	293	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680487	30680487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002056-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			649	140	336	0	ENST00000376406.3:c.1232C>T	p.Ser411Leu	p.S411L	ENST00000376406	NM_014641.2	411	tCa/tTa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39937175	39937175	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002056-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			736	140	320	0	ENST00000378444.4:c.8C>G	p.Ser3Ter	p.S3*	ENST00000378444	NM_001123385.1	3	tCa/tGa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2969624	2969624	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0002069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			577	239	381	0	ENST00000396946.4:c.1653+2T>A		p.X551_splice	ENST00000396946	NM_032415.4	551																																																																																
ETV1	2115	MSKCC	GRCh37	7	14028655	14028655	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			772	374	604	0	ENST00000405192.2:c.23A>C	p.Gln8Pro	p.Q8P	ENST00000405192	NM_001163147.1	8	cAa/cCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			680	425	611	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174885	11174885	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			799	145	382	0	ENST00000361445.4:c.7149G>C	p.Leu2383Phe	p.L2383F	ENST00000361445	NM_004958.3	2383	ttG/ttC																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259291	16259291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			369	79	118	1	ENST00000375759.3:c.6556G>A	p.Ala2186Thr	p.A2186T	ENST00000375759	NM_015001.2	2186	Gcc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101324	27101324	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			960	189	284	0	ENST00000324856.7:c.4606G>C	p.Asp1536His	p.D1536H	ENST00000324856	NM_006015.4	1536	Gat/Cat																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120512166	120512166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			944	176	259	0	ENST00000256646.2:c.1076C>T	p.Ser359Phe	p.S359F	ENST00000256646	NM_024408.3	359	tCc/tTc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914629	32914629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			567	147	295	0	ENST00000380152.3:c.6137C>T	p.Ser2046Leu	p.S2046L	ENST00000380152		2046	tCa/tTa																																																																															
IDH2	3418	MSKCC	GRCh37	15	90630494	90630494	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0002079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			749	123	274	0	ENST00000330062.3:c.817C>G	p.His273Asp	p.H273D	ENST00000330062	NM_002168.2	273	Cac/Gac																																																																															
MLL3	58508	MSKCC	GRCh37	7	151874399	151874401	+	stop_gained	Nonsense_Mutation	ONP	ATC	ATC	TTA			P-0002079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1138	607	341	1	ENST00000262189.6:c.8137_8139delinsTAA	p.Asp2713Ter	p.D2713*	ENST00000262189	NM_170606.2	2713	GAT/TAA																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20159750	20159750	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002127-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			153	349	151	0	ENST00000379607.5:c.9G>C	p.Lys3Asn	p.K3N	ENST00000379607	NM_001412.3	3	aaG/aaC																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266821	198266829	+	inframe_deletion	In_Frame_Del	DEL	ATGGTCCGA	ATGGTCCGA	-			P-0002127-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			876	367	402	0	ENST00000335508.6:c.2103_2111del	p.Arg702_Ile704del	p.R702_I704del	ENST00000335508	NM_012433.2	701	gtTCGGACCATc/gtc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002133-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	90	422	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101468	27101468	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002133-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			178	64	476	0	ENST00000324856.7:c.4750C>T	p.Gln1584Ter	p.Q1584*	ENST00000324856	NM_006015.4	1584	Cag/Tag																																																																															
CDH1	999	MSKCC	GRCh37	16	68867305	68867306	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002133-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	103	463	0	ENST00000261769.5:c.2553dup	p.Glu852ArgfsTer9	p.E852Rfs*9	ENST00000261769	NM_004360.3	851	tca/tcAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002160-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			562	167	418	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
RHOA	387	MSKCC	GRCh37	3	49412964	49412964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002160-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			772	185	567	0	ENST00000418115.1:c.59G>T	p.Cys20Phe	p.C20F	ENST00000418115	NM_001664.2	20	tGc/tTc																																																																															
TP63	8626	MSKCC	GRCh37	3	189584524	189584524	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002160-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			731	97	428	0	ENST00000264731.3:c.820C>G	p.Gln274Glu	p.Q274E	ENST00000264731	NM_003722.4	274	Cag/Gag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518162	187518162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002160-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	131	453	0	ENST00000441802.2:c.12532G>A	p.Gly4178Arg	p.G4178R	ENST00000441802	NM_005245.3	4178	Ggg/Agg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163695	32163695	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002160-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	49	180	0	ENST00000375023.3:c.5531G>C	p.Arg1844Pro	p.R1844P	ENST00000375023	NM_004557.3	1844	cGg/cCg																																																																															
MLL	4297	MSKCC	GRCh37	11	118366500	118366500	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002160-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			610	162	408	0	ENST00000534358.1:c.5449A>G	p.Thr1817Ala	p.T1817A	ENST00000534358	NM_005933.3	1817	Act/Gct																																																																															
RB1	5925	MSKCC	GRCh37	13	48878151	48878151	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002160-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			125	23	47	0	ENST00000267163.4:c.103C>T	p.Gln35Ter	p.Q35*	ENST00000267163	NM_000321.2	35	Cag/Tag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	360007	360007	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002160-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			538	79	443	0	ENST00000262320.3:c.1082A>T	p.Gln361Leu	p.Q361L	ENST00000262320	NM_003502.3	361	cAg/cTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11118581	11118581	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002160-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			279	80	220	1	ENST00000344626.4:c.2005G>T	p.Glu669Ter	p.E669*	ENST00000344626	NM_003072.3	669	Gag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123742	11123742	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002160-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	117	363	0	ENST00000344626.4:c.2392G>T	p.Glu798Ter	p.E798*	ENST00000344626	NM_003072.3	798	Gag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55220237	55220238	+	splice_acceptor_variant	Splice_Site	DNP	AG	AG	CC			P-0002160-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			585	99	423	0	ENST00000275493.2:c.629-2_629-1delinsCC		p.X210_splice	ENST00000275493	NM_005228.3	210																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44919298	44919300	+	missense_variant	Missense_Mutation	ONP	TAC	TAC	CAA			P-0002160-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	41	135	0	ENST00000377967.4:c.1226_1228delinsCAA	p.Leu409_Gln410delinsProLys	p.L409_Q410delinsPK	ENST00000377967	NM_021140.2	409	cTACag/cCAAag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0002290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	307	576	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
MDM2	4193	MSKCC	GRCh37	12	69222704	69222704	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			486	47	505	0	ENST00000462284.1:c.677C>A	p.Ser226Ter	p.S226*	ENST00000462284	NM_002392.5	226	tCg/tAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002312-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			286	41	675	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RB1	5925	MSKCC	GRCh37	13	48937001	48937001	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002312-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			225	159	765	0	ENST00000267163.4:c.769C>T	p.Gln257Ter	p.Q257*	ENST00000267163	NM_000321.2	257	Cag/Tag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180055985	180055985	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002329-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	37	379	2	ENST00000261937.6:c.1000A>G	p.Ser334Gly	p.S334G	ENST00000261937	NM_182925.4	334	Agc/Ggc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002329-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	123	328	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0002329-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	101	339	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456647	32456647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002329-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			142	15	131	0	ENST00000332351.3:c.245C>T	p.Ala82Val	p.A82V	ENST00000332351	NM_024426.4	82	gCc/gTc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534325	63534325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002329-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			573	34	412	0	ENST00000307078.5:c.1196G>A	p.Arg399Gln	p.R399Q	ENST00000307078	NM_004655.3	399	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0002388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			474	262	400	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
KDM5A	5927	MSKCC	GRCh37	12	402145	402145	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			707	278	922	0	ENST00000399788.2:c.4646A>G	p.Asn1549Ser	p.N1549S	ENST00000399788	NM_001042603.1	1549	aAt/aGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118704	115118706	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0002388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	274	559	0	ENST00000257566.3:c.635_637del	p.Asn212del	p.N212del	ENST00000257566	NM_016569.3	212	aACAtt/att																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603006	48603007	+	splice_acceptor_variant	Splice_Site	INS	-	-	GGTCTTT			P-0002388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	19	288	0	ENST00000342988.3:c.1309_1315dup		p.X437_splice	ENST00000342988	NM_005359.5	437																																																																																
MLL3	58508	MSKCC	GRCh37	7	151880222	151880222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002398-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			489	27	195	0	ENST00000262189.6:c.5102G>A	p.Arg1701Lys	p.R1701K	ENST00000262189	NM_170606.2	1701	aGa/aAa																																																																															
PAX5	5079	MSKCC	GRCh37	9	37002643	37002643	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0002398-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	95	147	0	ENST00000358127.4:c.604+2T>A		p.X202_splice	ENST00000358127	NM_001280556.1	202																																																																																
EP300	2033	MSKCC	GRCh37	22	41533656	41533656	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0002398-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			421	222	249	0	ENST00000263253.7:c.1623-1G>A		p.X541_splice	ENST00000263253	NM_001429.3	541																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0002426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			643	334	320	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
ERG	2078	MSKCC	GRCh37	21	39817469	39817469	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			976	74	286	0	ENST00000288319.7:c.94G>C	p.Glu32Gln	p.E32Q	ENST00000288319	NM_182918.3	32	Gag/Cag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0002426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1004	86	307	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0002426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			534	174	290	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
KIT	3815	MSKCC	GRCh37	4	55593667	55593669	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0002426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			818	42	302	0	ENST00000288135.5:c.1735_1737del	p.Asp579del	p.D579del	ENST00000288135	NM_000222.2	578	tATGat/tat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28929495		P-0002489-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	344	473	0	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241677	55241677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002489-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			272	360	534	0	ENST00000275493.2:c.2125G>A	p.Glu709Lys	p.E709K	ENST00000275493	NM_005228.3	709	Gaa/Aaa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485273	8485273	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002489-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			324	58	542	0	ENST00000356435.5:c.3107T>C	p.Leu1036Pro	p.L1036P	ENST00000356435		1036	cTg/cCg																																																																															
ATM	472	MSKCC	GRCh37	11	108206578	108206578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002489-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	119	378	0	ENST00000278616.4:c.8158G>T	p.Asp2720Tyr	p.D2720Y	ENST00000278616	NM_000051.3	2720	Gat/Tat																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251260	99251260	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002489-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	39	446	0	ENST00000268035.6:c.564G>C	p.Glu188Asp	p.E188D	ENST00000268035	NM_000875.3	188	gaG/gaC																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251278	99251278	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002489-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	39	446	0	ENST00000268035.6:c.582G>C	p.Lys194Asn	p.K194N	ENST00000268035	NM_000875.3	194	aaG/aaC																																																																															
ATRX	546	MSKCC	GRCh37	X	76938185	76938185	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002489-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	155	578	0	ENST00000373344.5:c.2563C>G	p.His855Asp	p.H855D	ENST00000373344	NM_000489.3	855	Cac/Gac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061207	38061207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			273	252	219	0	ENST00000250448.2:c.782G>A	p.Arg261His	p.R261H	ENST00000250448	NM_004496.3	261	cGc/cAc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37676232	37676232	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0002537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			286	295	457	1	ENST00000447079.4:c.2987T>G	p.Leu996Ter	p.L996*	ENST00000447079	NM_015083.1	996	tTa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0002593-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			233	299	467	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
PIM1	5292	MSKCC	GRCh37	6	37138389	37138389	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002593-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	209	260	0	ENST00000373509.5:c.38G>C	p.Arg13Pro	p.R13P	ENST00000373509	NM_002648.3	13	cGc/cCc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117687422	117687422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002593-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			544	337	428	0	ENST00000368508.3:c.2629G>T	p.Ala877Ser	p.A877S	ENST00000368508	NM_002944.2	877	Gcc/Tcc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771828	135771828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002593-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			252	703	469	0	ENST00000298552.3:c.3289C>T	p.Arg1097Cys	p.R1097C	ENST00000298552	NM_001162426.1	1097	Cgt/Tgt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44913131	44913131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002593-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			743	386	612	2	ENST00000377967.4:c.806C>T	p.Ala269Val	p.A269V	ENST00000377967	NM_021140.2	269	gCt/gTt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589619	67589630	+	inframe_deletion	In_Frame_Del	DEL	GAGAATATGATA	GAGAATATGATA	-			P-0002593-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			711	344	394	0	ENST00000274335.5:c.1384_1395del	p.Glu462_Arg465del	p.E462_R465del	ENST00000274335		461	cGAGAATATGATAga/cga																																																																															
MED12	9968	MSKCC	GRCh37	X	70338640	70338653	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCCTGAAGCGGC	GCCCCTGAAGCGGC	CGAACAT			P-0002593-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			627	124	420	0	ENST00000374080.3:c.36_49delinsCGAACAT	p.Pro13GlufsTer22	p.P13Efs*22	ENST00000374080		12	cgGCCCCTGAAGCGGCcg/cgCGAACATcg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289061	33289064	+	frameshift_variant	Frame_Shift_Del	DEL	AGGT	AGGT	-			P-0002597-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			225	103	190	0	ENST00000374542.5:c.488_491del	p.His163ProfsTer65	p.H163Pfs*65	ENST00000374542	NM_001141970.1	163	cACCTc/cc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147516	47147516	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002597-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			137	40	312	0	ENST00000409792.3:c.4810T>G	p.Tyr1604Asp	p.Y1604D	ENST00000409792	NM_014159.6	1604	Tac/Gac																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272497	15272497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002597-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			106	30	194	0	ENST00000263388.2:c.5942G>A	p.Arg1981His	p.R1981H	ENST00000263388	NM_000435.2	1981	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101402	27101402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			385	378	219	0	ENST00000324856.7:c.4689del	p.Met1564Ter	p.M1564*	ENST00000324856	NM_006015.4	1562	Ccc/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			119	606	264	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176132110	176132110	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			867	352	318	0	ENST00000367669.3:c.657G>T	p.Trp219Cys	p.W219C	ENST00000367669	NM_022457.5	219	tgG/tgT																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198285806	198285806	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			860	338	333	0	ENST00000335508.6:c.247G>T	p.Gly83Ter	p.G83*	ENST00000335508	NM_012433.2	83	Gga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426646	212426646	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			740	276	387	0	ENST00000342788.4:c.2469G>T	p.Trp823Cys	p.W823C	ENST00000342788	NM_005235.2	823	tgG/tgT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212589871	212589871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			748	288	353	0	ENST00000342788.4:c.671C>T	p.Pro224Leu	p.P224L	ENST00000342788	NM_005235.2	224	cCt/cTt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66242765	66242765	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			418	492	298	0	ENST00000273854.3:c.1807T>C	p.Cys603Arg	p.C603R	ENST00000273854	NM_004439.5	603	Tgt/Cgt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143094800	143094800	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			766	522	329	1	ENST00000262992.4:c.1344G>T	p.Lys448Asn	p.K448N	ENST00000262992	NM_001101669.1	448	aaG/aaT																																																																															
SMO	6608	MSKCC	GRCh37	7	128845452	128845452	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			635	535	298	0	ENST00000249373.3:c.749C>A	p.Ala250Asp	p.A250D	ENST00000249373	NM_005631.4	250	gCc/gAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8492920	8492920	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	536	329	1	ENST00000356435.5:c.2409C>G	p.Tyr803Ter	p.Y803*	ENST00000356435		803	taC/taG																																																																															
PAX5	5079	MSKCC	GRCh37	9	36840576	36840576	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	479	320	0	ENST00000358127.4:c.1157C>A	p.Thr386Asn	p.T386N	ENST00000358127	NM_001280556.1	386	aCt/aAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402781	139402781	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	227	258	0	ENST00000277541.6:c.3228G>T	p.Gln1076His	p.Q1076H	ENST00000277541	NM_017617.3	1076	caG/caT																																																																															
TET1	80312	MSKCC	GRCh37	10	70333563	70333563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			481	290	399	0	ENST00000373644.4:c.1468C>A	p.Pro490Thr	p.P490T	ENST00000373644	NM_030625.2	490	Cca/Aca																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524709	103524709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			193	792	376	0	ENST00000355739.4:c.2840C>T	p.Ser947Phe	p.S947F	ENST00000355739	NM_000123.3	947	tCc/tTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602584	10602584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			140	558	316	0	ENST00000171111.5:c.994G>A	p.Gly332Ser	p.G332S	ENST00000171111	NM_203500.1	332	Ggc/Agc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101119	41101119	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			555	380	245	0	ENST00000373198.4:c.1237G>T	p.Ala413Ser	p.A413S	ENST00000373198	NM_133170.3	413	Gcg/Tcg																																																																															
RB1	5925	MSKCC	GRCh37	13	48955453	48955453	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			248	847	388	0	ENST00000267163.4:c.1572del	p.Ala525ProfsTer7	p.A525Pfs*7	ENST00000267163	NM_000321.2	523	ttA/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0002650-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			674	50	277	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987033	36987033	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002650-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	19	163	0	ENST00000354822.5:c.656del	p.Pro219ArgfsTer9	p.P219Rfs*9	ENST00000354822	NM_001079668.2	219	cCg/cg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0002657-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	160	191	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922321	178922321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002657-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			489	44	295	0	ENST00000263967.3:c.1090G>A	p.Gly364Arg	p.G364R	ENST00000263967	NM_006218.2	364	Gga/Aga																																																																															
CDH1	999	MSKCC	GRCh37	16	68857446	68857446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002657-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			150	285	302	0	ENST00000261769.5:c.2081del	p.Val694AlafsTer28	p.V694Afs*28	ENST00000261769	NM_004360.3	694	gTc/gc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002667-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	260	320	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002667-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	207	313	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119634913	119634913	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002667-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			493	272	330	0	ENST00000316626.5:c.586T>G	p.Leu196Val	p.L196V	ENST00000316626		196	Tta/Gta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916933	178916933	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002667-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	192	294	0	ENST00000263967.3:c.320A>T	p.Asn107Ile	p.N107I	ENST00000263967	NM_006218.2	107	aAc/aTc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060784	38060784	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002667-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			602	340	540	0	ENST00000250448.2:c.1205T>A	p.Ile402Asn	p.I402N	ENST00000250448	NM_004496.3	402	aTc/aAc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061261	38061264	+	missense_variant	Missense_Mutation	ONP	TAGG	TAGG	GAGC			P-0002667-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			467	226	382	0	ENST00000250448.2:c.725_728delinsGCTC	p.Ser242_Tyr243delinsCysSer	p.S242_Y243delinsCS	ENST00000250448	NM_004496.3	242	tCCTAc/tGCTCc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591865	48591865	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002667-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	273	419	0	ENST00000342988.3:c.1028C>G	p.Ser343Ter	p.S343*	ENST00000342988	NM_005359.5	343	tCa/tGa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602806	10602806	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002677-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			50	57	299	0	ENST00000171111.5:c.772G>T	p.Glu258Ter	p.E258*	ENST00000171111	NM_203500.1	258	Gaa/Taa																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983122	149983122	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0002677-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			31	51	333	0	ENST00000253339.5:c.3136A>T	p.Lys1046Ter	p.K1046*	ENST00000253339		1046	Aaa/Taa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518189	8518189	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002677-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			31	52	315	0	ENST00000356435.5:c.1202G>T	p.Arg401Leu	p.R401L	ENST00000356435		401	cGg/cTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123734	11123734	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002677-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			35	55	320	0	ENST00000344626.4:c.2384A>G	p.Tyr795Cys	p.Y795C	ENST00000344626	NM_003072.3	795	tAc/tGc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207065	1207065	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002677-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			51	52	303	0	ENST00000326873.7:c.157delG	p.Asp53ThrfsTer11	p.D53Tfs*11	ENST00000326873	NM_000455.4	51	atG/at																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30129380	30129380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002694-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			785	44	588	0	ENST00000263025.4:c.648G>A	p.Met216Ile	p.M216I	ENST00000263025	NM_002746.2	216	atG/atA																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032583	12032583	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			267	184	484	0	ENST00000353533.5:c.1019T>C	p.Phe340Ser	p.F340S	ENST00000353533	NM_003010.3	340	tTc/tCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002718-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			922	101	635	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CCND2	894	MSKCC	GRCh37	12	4409068	4409068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002718-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			786	59	554	0	ENST00000261254.3:c.763C>T	p.Leu255Phe	p.L255F	ENST00000261254	NM_001759.3	255	Ctc/Ttc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584787	48584787	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002718-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	150	610	0	ENST00000342988.3:c.865C>T	p.Gln289Ter	p.Q289*	ENST00000342988	NM_005359.5	289	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1220715	1220715	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0002718-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			729	63	487	0	ENST00000326873.7:c.733C>A	p.Leu245Ile	p.L245I	ENST00000326873	NM_000455.4	245	Ctc/Atc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868129	45868130	+	missense_variant	Missense_Mutation	DNP	CT	CT	AC			P-0002718-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			687	63	576	0	ENST00000391945.4:c.560_561delinsGT	p.Gln187Arg	p.Q187R	ENST00000391945	NM_000400.3	187	cAG/cGT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0002738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			40	158	352	0	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0002738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	134	196	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112176425	112176425	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			216	86	302	0	ENST00000257430.4:c.5134G>C	p.Glu1712Gln	p.E1712Q	ENST00000257430	NM_000038.5	1712	Gaa/Caa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717661	89717661	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			32	79	334	0	ENST00000371953.3:c.686C>G	p.Ser229Ter	p.S229*	ENST00000371953	NM_000314.4	229	tCa/tGa																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154887	2154887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			97	46	256	0	ENST00000434045.2:c.334G>A	p.Ala112Thr	p.A112T	ENST00000434045	NM_001127598.1	112	Gca/Aca																																																																															
NF1	4763	MSKCC	GRCh37	17	29684320	29684320	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	201	382	0	ENST00000358273.4:c.7903G>C	p.Asp2635His	p.D2635H	ENST00000358273	NM_001042492.2	2635	Gat/Cat																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435112	18435125	+	frameshift_variant	Frame_Shift_Del	DEL	TCTAGCCAAGTCAG	TCTAGCCAAGTCAG	-			P-0002738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			212	82	402	0	ENST00000266497.5:c.100_113del	p.Ser34GlyfsTer3	p.S34Gfs*3	ENST00000266497		33	TCTAGCCAAGTCAGt/t																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0002761-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			160	108	69	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998985	11998985	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002761-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	97	113	0	ENST00000353533.5:c.487C>T	p.Gln163Ter	p.Q163*	ENST00000353533	NM_003010.3	163	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579319	7579319	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002761-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			286	173	66	0	ENST00000269305.4:c.368del	p.Thr123IlefsTer47	p.T123Ifs*47	ENST00000269305	NM_001126112.2	123	aCt/at																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0002768-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			456	126	410	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138374244	138374244	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002768-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			496	133	367	0	ENST00000289153.2:c.3200A>T	p.Asp1067Val	p.D1067V	ENST00000289153	NM_006219.2	1067	gAc/gTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0002768-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			382	125	380	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231127	46231131	+	frameshift_variant	Frame_Shift_Del	DEL	CAAAA	CAAAA	-			P-0002768-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	156	373	0	ENST00000334344.6:c.1048_1052del	p.Lys350TyrfsTer17	p.K350Yfs*17	ENST00000334344	NM_152641.2	349	ttCAAAAct/ttct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002781-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			23	176	240	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																															
MLL3	58508	MSKCC	GRCh37	7	151859999	151860032	+	frameshift_variant	Frame_Shift_Del	DEL	GTGTAAAAGAAGGCCTCACTGGGGACTGCTGGAA	GTGTAAAAGAAGGCCTCACTGGGGACTGCTGGAA	-			P-0002781-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			39	436	240	0	ENST00000262189.6:c.10630_10663del	p.Phe3544LeufsTer9	p.F3544Lfs*9	ENST00000262189	NM_170606.2	3544	TTCCAGCAGTCCCCAGTGAGGCCTTCTTTTACACct/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	438	394	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			423	421	382	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	247	193	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			458	203	366	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			215	188	420	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	161	374	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			222	414	406	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			336	150	338	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244136	153244136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			254	525	483	0	ENST00000281708.4:c.2021G>A	p.Arg674Gln	p.R674Q	ENST00000281708	NM_033632.3	674	cGg/cAg																																																																															
PMS2	5395	MSKCC	GRCh37	7	6042184	6042184	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	178	365	0	ENST00000265849.7:c.437A>G	p.Lys146Arg	p.K146R	ENST00000265849	NM_000535.5	146	aAa/aGa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94201032	94201032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			477	285	418	0	ENST00000323929.3:c.1045C>T	p.Arg349Trp	p.R349W	ENST00000323929	NM_005591.3	349	Cgg/Tgg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434452	121434452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			493	141	425	0	ENST00000257555.6:c.1216G>A	p.Ala406Thr	p.A406T	ENST00000257555		406	Gcc/Acc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135046	11135046	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			118	191	258	0	ENST00000344626.4:c.3013C>T	p.Arg1005Ter	p.R1005*	ENST00000344626	NM_003072.3	1005	Cga/Tga																																																																															
MYC	4609	MSKCC	GRCh37	8	128750762	128750764	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-	rs1274246760		P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	356	376	0	ENST00000377970.2:c.301_303del	p.Asn101del	p.N101del	ENST00000377970	NM_002467.4	100	gACAac/gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0002839-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			684	170	345	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572117	64572117	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002839-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			101	218	238	0	ENST00000337652.1:c.1537C>T	p.Gln513Ter	p.Q513*	ENST00000337652	NM_130803.2	513	Cag/Tag																																																																															
ATRX	546	MSKCC	GRCh37	X	76920263	76920263	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002839-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			151	393	424	0	ENST00000373344.5:c.3814G>C	p.Ala1272Pro	p.A1272P	ENST00000373344	NM_000489.3	1272	Gcc/Ccc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002846-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			948	49	353	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0002872-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			313	335	247	0	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27059260	27059260	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002872-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			386	140	390	0	ENST00000324856.7:c.1897C>T	p.Gln633Ter	p.Q633*	ENST00000324856	NM_006015.4	633	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628184	187628184	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61733570		P-0002872-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			508	81	356	0	ENST00000441802.2:c.2798G>A	p.Arg933His	p.R933H	ENST00000441802	NM_005245.3	933	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175084	112175084	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002872-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			250	112	223	0	ENST00000257430.4:c.3793G>T	p.Glu1265Ter	p.E1265*	ENST00000257430	NM_000038.5	1265	Gaa/Taa																																																																															
MLL3	58508	MSKCC	GRCh37	7	152009008	152009008	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002872-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			354	62	289	0	ENST00000262189.6:c.614T>C	p.Ile205Thr	p.I205T	ENST00000262189	NM_170606.2	205	aTa/aCa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602797	10602797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002872-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			446	233	375	0	ENST00000171111.5:c.781C>T	p.Arg261Trp	p.R261W	ENST00000171111	NM_203500.1	261	Cgg/Tgg																																																																															
ATRX	546	MSKCC	GRCh37	X	76944349	76944349	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002872-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			583	66	474	0	ENST00000373344.5:c.556A>G	p.Ile186Val	p.I186V	ENST00000373344	NM_000489.3	186	Att/Gtt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002917-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			194	70	793	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
REL	5966	MSKCC	GRCh37	2	61149324	61149324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002917-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			207	28	604	2	ENST00000295025.8:c.1514G>A	p.Ser505Asn	p.S505N	ENST00000295025	NM_002908.2	505	aGc/aAc																																																																															
TERT	7015	MSKCC	GRCh37	5	1254540	1254540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002917-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			109	20	704	0	ENST00000310581.5:c.3238C>T	p.Leu1080Phe	p.L1080F	ENST00000310581	NM_198253.2	1080	Ctc/Ttc																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459632	149459632	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002917-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			172	23	741	0	ENST00000286301.3:c.575G>T	p.Arg192Leu	p.R192L	ENST00000286301	NM_005211.3	192	cGg/cTg																																																																															
MLL3	58508	MSKCC	GRCh37	7	151842316	151842316	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002917-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	42	698	0	ENST00000262189.6:c.14096T>C	p.Leu4699Pro	p.L4699P	ENST00000262189	NM_170606.2	4699	cTt/cCt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207198	1207198	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002917-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			158	47	431	0	ENST00000326873.7:c.286A>T	p.Lys96Ter	p.K96*	ENST00000326873	NM_000455.4	96	Aag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003017-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			643	220	608	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ABL1	25	MSKCC	GRCh37	9	133730365	133730365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003017-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			631	92	461	0	ENST00000318560.5:c.431G>A	p.Gly144Glu	p.G144E	ENST00000318560	NM_005157.4	144	gGg/gAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101986	11101986	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003017-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			474	55	346	0	ENST00000344626.4:c.1406G>T	p.Arg469Leu	p.R469L	ENST00000344626	NM_003072.3	469	cGg/cTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17954648	17954648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003017-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			659	77	443	1	ENST00000458235.1:c.246C>A	p.Phe82Leu	p.F82L	ENST00000458235	NM_000215.3	82	ttC/ttA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0003030-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	135	304	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0003030-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	254	270	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
TERT	7015	MSKCC	GRCh37	5	1271315	1271315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003030-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			261	227	257	1	ENST00000310581.5:c.2387C>A	p.Ser796Tyr	p.S796Y	ENST00000310581	NM_198253.2	796	tCc/tAc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246473	46246473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003030-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	30	310	0	ENST00000334344.6:c.4567G>A	p.Asp1523Asn	p.D1523N	ENST00000334344	NM_152641.2	1523	Gat/Aat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954039	32954039	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs202155613		P-0003030-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			797	42	406	0	ENST00000380152.3:c.9106C>G	p.Gln3036Glu	p.Q3036E	ENST00000380152		3036	Caa/Gaa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144114	11144114	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003030-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	250	321	0	ENST00000344626.4:c.3695G>T	p.Gly1232Val	p.G1232V	ENST00000344626	NM_003072.3	1232	gGc/gTc																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518506	204518506	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	176	201	0	ENST00000367182.3:c.1169A>G	p.Asn390Ser	p.N390S	ENST00000367182	NM_001278516.1	390	aAc/aGc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402475	139402475	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	318	310	0	ENST00000277541.6:c.3442G>T	p.Glu1148Ter	p.E1148*	ENST00000277541	NM_017617.3	1148	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579381	7579381	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	199	191	0	ENST00000269305.4:c.306delC	p.Tyr103ThrfsTer20	p.Y103Tfs*20	ENST00000269305	NM_001126112.2	102	acC/ac																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349730	15349730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	118	128	0	ENST00000263377.2:c.3844C>T	p.Arg1282Cys	p.R1282C	ENST00000263377	NM_058243.2	1282	Cgc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630172	187630172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	108	258	0	ENST00000441802.2:c.810C>A	p.Asp270Glu	p.D270E	ENST00000441802	NM_005245.3	270	gaC/gaA																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475078	40475078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	463	548	0	ENST00000264657.5:c.1832G>T	p.Ser611Ile	p.S611I	ENST00000264657	NM_139276.2	611	aGt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	14	212	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0003184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	27	276	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212286761	212286761	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	90	239	0	ENST00000342788.4:c.2935C>T	p.Arg979Ter	p.R979*	ENST00000342788	NM_005235.2	979	Cga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528575	89528575	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	95	229	0	ENST00000336596.2:c.2875G>T	p.Val959Phe	p.V959F	ENST00000336596	NM_005233.5	959	Gtt/Ttt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201845	66201845	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	153	189	0	ENST00000273854.3:c.2659-2A>T		p.X887_splice	ENST00000273854	NM_004439.5	887																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32190582	32190582	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	70	189	0	ENST00000375023.3:c.157T>A	p.Cys53Ser	p.C53S	ENST00000375023	NM_004557.3	53	Tgt/Agt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	53	95	0	ENST00000304494.5:c.247C>A	p.His83Asn	p.H83N	ENST00000304494	NM_000077.4	83	Cac/Aac																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66774104	66774104	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	102	246	0	ENST00000307102.5:c.580T>G	p.Ser194Ala	p.S194A	ENST00000307102	NM_002755.3	194	Tcc/Gcc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646611	23646611	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	143	253	0	ENST00000261584.4:c.1256G>T	p.Cys419Phe	p.C419F	ENST00000261584	NM_024675.3	419	tGc/tTc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59760667	59760667	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	236	347	0	ENST00000259008.2:c.3740G>C	p.Gly1247Ala	p.G1247A	ENST00000259008	NM_032043.2	1247	gGt/gCt																																																																															
INSR	3643	MSKCC	GRCh37	19	7120721	7120721	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	217	426	0	ENST00000302850.5:c.3569A>G	p.Tyr1190Cys	p.Y1190C	ENST00000302850	NM_000208.2	1190	tAc/tGc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735560	40735560	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	71	217	0	ENST00000373198.4:c.3313G>T	p.Ala1105Ser	p.A1105S	ENST00000373198	NM_133170.3	1105	Gct/Tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7576899	7576900	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	146	295	0	ENST00000269305.4:c.946_947insT	p.Pro316LeufsTer21	p.P316Lfs*21	ENST00000269305	NM_001126112.2	316	ccc/cTcc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453138	140453139	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTA			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	612	281	0	ENST00000288602.6:c.1794_1796dupTAC	p.Thr599dup	p.T599dup	ENST00000288602	NM_004333.4	599	aca/acTACa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231416	46231416	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	128	307	0	ENST00000334344.6:c.1256del	p.Leu419ProfsTer21	p.L419Pfs*21	ENST00000334344	NM_152641.2	419	cTc/cc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971112	+	missense_variant	Missense_Mutation	DNP	GC	GC	TG			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	53	95	0	ENST00000304494.5:c.246_247delinsCA	p.His83Asn	p.H83N	ENST00000304494	NM_000077.4	82	gtGCac/gtCAac																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10248621	10248621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	104	222	2	ENST00000340748.4:c.4132C>T	p.Arg1378Trp	p.R1378W	ENST00000340748		1378	Cgg/Tgg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11194409	11194409	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0003281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	268	215	0	ENST00000361445.4:c.5245C>T	p.Arg1749Ter	p.R1749*	ENST00000361445	NM_004958.3	1749	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106421	27106421	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	207	211	0	ENST00000324856.7:c.6032T>G	p.Leu2011Arg	p.L2011R	ENST00000324856	NM_006015.4	2011	cTg/cGg																																																																															
AR	367	MSKCC	GRCh37	X	66766322	66766322	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	150	84	0	ENST00000374690.3:c.1334A>C	p.Gln445Pro	p.Q445P	ENST00000374690	NM_000044.3	445	cAg/cCg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161243	56161243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	81	339	0	ENST00000399503.3:c.1112C>T	p.Ser371Leu	p.S371L	ENST00000399503	NM_005921.1	371	tCa/tTa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2983911	2983911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	131	442	0	ENST00000396946.4:c.619C>T	p.Arg207Cys	p.R207C	ENST00000396946	NM_032415.4	207	Cgc/Tgc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101904913	101904913	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	166	286	0	ENST00000374994.4:c.902del	p.Gly301GlufsTer2	p.G301Efs*2	ENST00000374994	NM_004612.2	301	Gga/ga																																																																															
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0003285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	140	339	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																															
APC	324	MSKCC	GRCh37	5	112175764	112175765	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	107	244	0	ENST00000257430.4:c.4473_4474insA	p.Ala1492SerfsTer22	p.A1492Sfs*22	ENST00000257430	NM_000038.5	1491	-/A																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0003298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	295	275	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	57	141	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0003298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	238	277	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
APC	324	MSKCC	GRCh37	5	112175060	112175060	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	85	199	0	ENST00000257430.4:c.3769G>T	p.Glu1257Ter	p.E1257*	ENST00000257430	NM_000038.5	1257	Gaa/Taa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871036	12871036	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	27	185	0	ENST00000228872.4:c.263A>G	p.Tyr88Cys	p.Y88C	ENST00000228872	NM_004064.3	88	tAc/tGc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0003298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	422	598	0	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120181	70120182	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0003298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	145	198	0	ENST00000245479.2:c.1185_1186dup	p.His396ArgfsTer8	p.H396Rfs*8	ENST00000245479	NM_000346.3	395	acg/aCGcg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0003316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	149	416	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241677	55241677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	209	481	0	ENST00000275493.2:c.2125G>A	p.Glu709Lys	p.E709K	ENST00000275493	NM_005228.3	709	Gaa/Aaa																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158408	26158408	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	60	359	2	ENST00000289316.2:c.11C>A	p.Pro4His	p.P4H	ENST00000289316	NM_138720.2	4	cCt/cAt																																																																															
ATM	472	MSKCC	GRCh37	11	108165786	108165786	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0003316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	64	370	0	ENST00000278616.4:c.4909G>T	p.Asp1637Tyr	p.D1637Y	ENST00000278616	NM_000051.3	1637	Gat/Tat																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921394	39921394	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0003316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	42	366	0	ENST00000378444.4:c.4426G>T	p.Glu1476Ter	p.E1476*	ENST00000378444	NM_001123385.1	1476	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0003395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	119	267	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508394	106508394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	35	125	0	ENST00000359195.3:c.388C>T	p.Arg130Trp	p.R130W	ENST00000359195	NM_002649.2	130	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	35	322	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729496	41729496	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	227	612	0	ENST00000242208.4:c.1033T>A	p.Tyr345Asn	p.Y345N	ENST00000242208	NM_002192.2	345	Tat/Aat																																																																															
MLL	4297	MSKCC	GRCh37	11	118343055	118343055	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	84	165	0	ENST00000534358.1:c.1181T>G	p.Leu394Arg	p.L394R	ENST00000534358	NM_005933.3	394	cTg/cGg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16068294	16068315	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TGTTTCTTTTTCAGTTTAAGGA	TGTTTCTTTTTCAGTTTAAGGA	-			P-0003400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	28	124	0	ENST00000268712.3:c.596_617del	p.Ile199AsnfsTer79	p.I199Nfs*79	ENST00000268712	NM_006311.3	199	aTCCTTAAACTGAAAAAGAAACAa/aa																																																																															
ABL1	25	MSKCC	GRCh37	9	133760542	133760543	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	86	477	0	ENST00000318560.5:c.2870dup	p.Pro958AlafsTer88	p.P958Afs*88	ENST00000318560	NM_005157.4	955	-/A																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	107	443	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0003483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	91	585	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11297917	11297917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	26	389	1	ENST00000361445.4:c.2191C>T	p.Arg731Cys	p.R731C	ENST00000361445	NM_004958.3	731	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951964	178951964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	86	427	0	ENST00000263967.3:c.3019G>C	p.Gly1007Arg	p.G1007R	ENST00000263967	NM_006218.2	1007	Ggc/Cgc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437605	56437605	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1329721997		P-0003483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	49	261	0	ENST00000407977.2:c.857G>A	p.Arg286Gln	p.R286Q	ENST00000407977		286	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0003493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	552	238	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913476		P-0003493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	142	365	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																															
CUL3	8452	MSKCC	GRCh37	2	225378348	225378348	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	145	255	0	ENST00000264414.4:c.547A>G	p.Ile183Val	p.I183V	ENST00000264414	NM_003590.4	183	Ata/Gta																																																																															
ATR	545	MSKCC	GRCh37	3	142224052	142224052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	508	339	0	ENST00000350721.4:c.5125C>T	p.His1709Tyr	p.H1709Y	ENST00000350721	NM_001184.3	1709	Cat/Tat																																																																															
ATR	545	MSKCC	GRCh37	3	142232464	142232464	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	190	253	0	ENST00000350721.4:c.4520C>A	p.Ala1507Asp	p.A1507D	ENST00000350721	NM_001184.3	1507	gCc/gAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118902	115118928	+	inframe_deletion	In_Frame_Del	DEL	CTTTTTTATCCAGCCCAGAACATCTCA	CTTTTTTATCCAGCCCAGAACATCTCA	-			P-0003493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	111	255	0	ENST00000257566.3:c.413_439del	p.Val138_Lys146del	p.V138_K146del	ENST00000257566	NM_016569.3	138	gTGAGATGTTCTGGGCTGGATAAAAAAGcc/gcc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061206	38061217	+	inframe_deletion	In_Frame_Del	DEL	GCGCAAGTAGCA	GCGCAAGTAGCA	-			P-0003493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	124	212	0	ENST00000250448.2:c.772_783del	p.Cys258_Arg261del	p.C258_R261del	ENST00000250448	NM_004496.3	258	TGCTACTTGCGC/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	280	269	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0003514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	389	225	1	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158452	26158452	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	226	215	0	ENST00000289316.2:c.55G>T	p.Val19Leu	p.V19L	ENST00000289316	NM_138720.2	19	Gtg/Ttg																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125514436	125514436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	63	246	0	ENST00000428830.2:c.1131G>A	p.Met377Ile	p.M377I	ENST00000428830	NM_001114121.2	377	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	316	299	1	ENST00000269305.4:c.794T>C	p.Leu265Pro	p.L265P	ENST00000269305	NM_001126112.2	265	cTg/cCg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554354	63554354	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	536	298	0	ENST00000307078.5:c.385C>T	p.Arg129Ter	p.R129*	ENST00000307078	NM_004655.3	129	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	83	369	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0003540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	81	470	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713864	30713864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	30	266	0	ENST00000359013.4:c.1264G>T	p.Asp422Tyr	p.D422Y	ENST00000359013	NM_001024847.2	422	Gac/Tac																																																																															
EED	8726	MSKCC	GRCh37	11	85956357	85956357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	28	188	1	ENST00000263360.6:c.86G>A	p.Ser29Asn	p.S29N	ENST00000263360	NM_003797.3	29	aGc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578401	7578402	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	GG	GG	T			P-0003594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	40	218	0	ENST00000269305.4:c.528_529delinsA	p.Cys176Ter	p.C176*	ENST00000269305	NM_001126112.2	176	tgCCcc/tgAcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0003597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			71	53	369	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442530	52442530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	90	316	0	ENST00000460680.1:c.215T>C	p.Ile72Thr	p.I72T	ENST00000460680	NM_004656.3	72	aTt/aCt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857679	9857679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	56	295	0	ENST00000330684.3:c.3722G>A	p.Arg1241Gln	p.R1241Q	ENST00000330684	NM_001134407.1	1241	cGg/cAg																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540230	23540235	+	inframe_deletion	In_Frame_Del	DEL	GGCTCC	GGCTCC	-			P-0003597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	58	87	0	ENST00000380871.4:c.168_173del	p.Pro62_Glu63del	p.P62_E63del	ENST00000380871	NM_006167.3	56	ccGGAGCCa/cca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0003635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	320	331	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0003635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	210	343	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7574002	7574002	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	434	455	0	ENST00000269305.4:c.1025G>C	p.Arg342Pro	p.R342P	ENST00000269305	NM_001126112.2	342	cGa/cCa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096370	178096370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	115	334	0	ENST00000397062.3:c.961G>A	p.Asp321Asn	p.D321N	ENST00000397062	NM_006164.4	321	Gat/Aat																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681058	30681058	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	75	249	0	ENST00000376406.3:c.661G>A	p.Asp221Asn	p.D221N	ENST00000376406	NM_014641.2	221	Gat/Aat																																																																															
RB1	5925	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587776783		P-0003635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	117	223	0	ENST00000267163.4:c.1215+1G>A		p.X405_splice	ENST00000267163	NM_000321.2	405																																																																																
BCOR	54880	MSKCC	GRCh37	X	39923805	39923805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	151	564	1	ENST00000378444.4:c.3286G>A	p.Glu1096Lys	p.E1096K	ENST00000378444	NM_001123385.1	1096	Gag/Aag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713754	30713754	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	41	155	0	ENST00000359013.4:c.1154A>C	p.His385Pro	p.H385P	ENST00000359013	NM_001024847.2	385	cAc/cCc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0003661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	179	269	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0003661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	234	338	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644740	67644740	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	170	321	0	ENST00000264010.4:c.5A>T	p.Glu2Val	p.E2V	ENST00000264010	NM_006565.3	2	gAa/gTa																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873809	35873832	+	inframe_deletion	In_Frame_Del	DEL	CTCCATGGCCCACTCCTGGGGGCG	CTCCATGGCCCACTCCTGGGGGCG	-			P-0003661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	43	258	0	ENST00000216797.5:c.19_42del	p.Arg7_Glu14del	p.R7_E14del	ENST00000216797	NM_020529.2	7	CGCCCCCAGGAGTGGGCCATGGAG/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	105	198	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
RET	5979	MSKCC	GRCh37	10	43610099	43610099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	81	304	0	ENST00000355710.3:c.2051C>T	p.Pro684Leu	p.P684L	ENST00000355710	NM_020975.4	684	cCg/cTg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746086	162746086	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	173	340	0	ENST00000367921.3:c.2209A>T	p.Ser737Cys	p.S737C	ENST00000367921	NM_006182.2	737	Agt/Tgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974730	21974730	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	157	218	0	ENST00000304494.5:c.97G>T	p.Glu33Ter	p.E33*	ENST00000304494	NM_000077.4	33	Gag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106720	27106720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	100	295	0	ENST00000324856.7:c.6331G>A	p.Val2111Ile	p.V2111I	ENST00000324856	NM_006015.4	2111	Gtc/Atc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65316538	65316538	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	89	263	2	ENST00000342505.4:c.1704C>A	p.Tyr568Ter	p.Y568*	ENST00000342505	NM_002227.2	568	taC/taA																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566773	212566773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	98	362	0	ENST00000342788.4:c.1408C>T	p.His470Tyr	p.H470Y	ENST00000342788	NM_005235.2	470	Cat/Tat																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670683	134670683	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	105	347	0	ENST00000398015.3:c.594C>A	p.Ser198Arg	p.S198R	ENST00000398015	NM_004441.4	198	agC/agA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542182	187542182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	216	337	0	ENST00000441802.2:c.5558G>A	p.Gly1853Glu	p.G1853E	ENST00000441802	NM_005245.3	1853	gGa/gAa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876109	35876109	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	85	327	0	ENST00000303115.3:c.901G>T	p.Glu301Ter	p.E301*	ENST00000303115	NM_002185.3	301	Gaa/Taa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187912	32187912	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	59	225	0	ENST00000375023.3:c.1309C>A	p.Leu437Met	p.L437M	ENST00000375023	NM_004557.3	437	Ctg/Atg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188394	32188394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	268	233	0	ENST00000375023.3:c.947A>T	p.Asp316Val	p.D316V	ENST00000375023	NM_004557.3	316	gAt/gTt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729862	41729862	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	215	450	0	ENST00000242208.4:c.667G>T	p.Val223Phe	p.V223F	ENST00000242208	NM_002192.2	223	Gtc/Ttc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739890	41739890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	192	398	0	ENST00000242208.4:c.83G>A	p.Gly28Glu	p.G28E	ENST00000242208	NM_002192.2	28	gGg/gAg																																																																															
HGF	3082	MSKCC	GRCh37	7	81334805	81334805	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	217	370	0	ENST00000222390.5:c.1911G>T	p.Met637Ile	p.M637I	ENST00000222390	NM_000601.4	637	atG/atT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485815	8485815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	188	296	0	ENST00000356435.5:c.3002G>A	p.Gly1001Glu	p.G1001E	ENST00000356435		1001	gGg/gAg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117353	115117353	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	176	343	0	ENST00000257566.3:c.821C>A	p.Pro274His	p.P274H	ENST00000257566	NM_016569.3	274	cCc/cAc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514386	103514386	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	120	186	0	ENST00000355739.4:c.887A>C	p.Gln296Pro	p.Q296P	ENST00000355739	NM_000123.3	296	cAa/cCa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679697	88679697	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	146	267	0	ENST00000360948.2:c.765+1G>A		p.X255_splice	ENST00000360948	NM_001012338.2	255																																																																																
NTRK3	4916	MSKCC	GRCh37	15	88680683	88680683	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	153	302	0	ENST00000360948.2:c.574G>T	p.Ala192Ser	p.A192S	ENST00000360948	NM_001012338.2	192	Gct/Tct																																																																															
AXIN1	8312	MSKCC	GRCh37	16	359995	359995	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	225	326	1	ENST00000262320.3:c.1094G>T	p.Arg365Leu	p.R365L	ENST00000262320	NM_003502.3	365	cGg/cTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843492	3843492	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	192	278	0	ENST00000262367.5:c.1111G>C	p.Glu371Gln	p.E371Q	ENST00000262367	NM_004380.2	371	Gag/Cag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857631	9857631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	147	264	1	ENST00000330684.3:c.3770C>T	p.Thr1257Ile	p.T1257I	ENST00000330684	NM_001134407.1	1257	aCa/aTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1221994	1221994	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	121	256	0	ENST00000326873.7:c.909C>G	p.Ile303Met	p.I303M	ENST00000326873	NM_000455.4	303	atC/atG																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792654	33792654	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			44	47	29	0	ENST00000498907.2:c.667G>C	p.Gly223Arg	p.G223R	ENST00000498907	NM_004364.3	223	Ggt/Cgt																																																																															
CIC	23152	MSKCC	GRCh37	19	42794599	42794599	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	148	264	0	ENST00000575354.2:c.1679A>G	p.Gln560Arg	p.Q560R	ENST00000575354	NM_015125.3	560	cAg/cGg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101039	41101039	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	137	251	0	ENST00000373198.4:c.1317G>T	p.Glu439Asp	p.E439D	ENST00000373198	NM_133170.3	439	gaG/gaT																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101416	27101417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	113	271	0	ENST00000324856.7:c.4703dup	p.Pro1569SerfsTer3	p.P1569Sfs*3	ENST00000324856	NM_006015.4	1566	-/C																																																																															
INSRR	3645	MSKCC	GRCh37	1	156811535	156811536	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0003674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			38	14	14	0	ENST00000368195.3:c.3448_3449delinsAT	p.Gly1150Met	p.G1150M	ENST00000368195	NM_014215.2	1150	GGg/ATg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279971	18279971	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	44	337	0	ENST00000222254.8:c.2054T>G	p.Leu685Arg	p.L685R	ENST00000222254	NM_005027.3	685	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578229	7578237	+	inframe_deletion	In_Frame_Del	DEL	TCCAAATAC	TCCAAATAC	-			P-0003678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	49	419	0	ENST00000269305.4:c.612_620delGTATTTGGA	p.Glu204_Leu206del	p.E204_L206del	ENST00000269305	NM_001126112.2	204	gaGTATTTGGAt/gat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	147	464	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131915013	131915013	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	86	282	0	ENST00000265335.6:c.370G>T	p.Gly124Cys	p.G124C	ENST00000265335		124	Ggt/Tgt																																																																															
MLL3	58508	MSKCC	GRCh37	7	151945131	151945131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	18	78	0	ENST00000262189.6:c.2388G>T	p.Met796Ile	p.M796I	ENST00000262189	NM_170606.2	796	atG/atT																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986988	36986988	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	79	363	0	ENST00000354822.5:c.701A>T	p.Gln234Leu	p.Q234L	ENST00000354822	NM_001079668.2	234	cAg/cTg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987055	36987055	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	85	291	0	ENST00000354822.5:c.634C>T	p.Gln212Ter	p.Q212*	ENST00000354822	NM_001079668.2	212	Caa/Taa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038526	47038526	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	43	272	0	ENST00000329236.7:c.457C>T	p.Arg153Ter	p.R153*	ENST00000329236	NM_001204466.1	153	Cga/Tga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272169	15272170	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	31	109	0	ENST00000263388.2:c.6269dup	p.Leu2092ProfsTer3	p.L2092Pfs*3	ENST00000263388	NM_000435.2	2090	ggc/ggGc																																																																															
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0003755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	91	322	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175225	112175225	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	53	251	0	ENST00000257430.4:c.3935del	p.Gly1312GlufsTer9	p.G1312Efs*9	ENST00000257430	NM_000038.5	1312	Gga/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577095	7577095	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519984		P-0003762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	223	308	0	ENST00000269305.4:c.843C>A	p.Asp281Glu	p.D281E	ENST00000269305	NM_001126112.2	281	gaC/gaA																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206652411	206652411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	247	275	0	ENST00000367120.3:c.1118C>T	p.Thr373Met	p.T373M	ENST00000367120	NM_014002.3	373	aCg/aTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0003779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	52	259	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811734	102811734	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	240	414	0	ENST00000307046.8:c.450A>C	p.Lys150Asn	p.K150N	ENST00000307046	NM_001111285.1	150	aaA/aaC																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111543	8111545	+	inframe_deletion	In_Frame_Del	DEL	CTA	CTA	-			P-0003779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	57	259	0	ENST00000346208.3:c.1033_1035del	p.Tyr345del	p.Y345del	ENST00000346208		343	ctCTAc/ctc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	26	110	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0003785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	72	260	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119582380	119582380	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	52	164	0	ENST00000316626.5:c.1021C>T	p.Arg341Ter	p.R341*	ENST00000316626		341	Cga/Tga																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466578	120466578	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	66	296	0	ENST00000256646.2:c.4541A>G	p.Lys1514Arg	p.K1514R	ENST00000256646	NM_024408.3	1514	aAa/aGa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217294	66217294	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	50	170	0	ENST00000273854.3:c.2321T>A	p.Val774Glu	p.V774E	ENST00000273854	NM_004439.5	774	gTg/gAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524456	187524456	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	48	209	0	ENST00000441802.2:c.11224G>C	p.Asp3742His	p.D3742H	ENST00000441802	NM_005245.3	3742	Gac/Cac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789600	3789600	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	70	272	0	ENST00000262367.5:c.4259A>C	p.Asp1420Ala	p.D1420A	ENST00000262367	NM_004380.2	1420	gAt/gCt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932412	39932412	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	323	366	1	ENST00000378444.4:c.2187G>T	p.Leu729Phe	p.L729F	ENST00000378444	NM_001123385.1	729	ttG/ttT																																																																															
ARAF	369	MSKCC	GRCh37	X	47424454	47424454	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	351	385	0	ENST00000377045.4:c.374G>C	p.Cys125Ser	p.C125S	ENST00000377045	NM_001654.4	125	tGc/tCc																																																																															
NF1	4763	MSKCC	GRCh37	17	29541485	29541485	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	32	85	0	ENST00000358273.4:c.1413delA	p.Val472Ter	p.V472*	ENST00000358273	NM_001042492.2	470	gAa/ga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0003807-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	18	251	2	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0003807-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	36	386	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907164	101907164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003807-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	29	221	0	ENST00000374994.4:c.1124C>T	p.Thr375Ile	p.T375I	ENST00000374994	NM_004612.2	375	aCa/aTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	54	166	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0003886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	139	304	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
KDR	3791	MSKCC	GRCh37	4	55979551	55979551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	186	491	0	ENST00000263923.4:c.896G>A	p.Arg299Gln	p.R299Q	ENST00000263923	NM_002253.2	299	cGg/cAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119050	70119050	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	249	250	0	ENST00000245479.2:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000245479	NM_000346.3	208	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912580		P-0003886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	116	222	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579361	7579361	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	182	312	0	ENST00000269305.4:c.326del	p.Phe109SerfsTer14	p.F109Sfs*14	ENST00000269305	NM_001126112.2	109	tTc/tc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213912	66213912	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	148	300	0	ENST00000273854.3:c.2518del	p.Ile840PhefsTer11	p.I840Ffs*11	ENST00000273854	NM_004439.5	840	Att/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	116	311	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0003901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	118	292	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	56	207	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0003901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	159	232	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411366	63411366	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	204	379	0	ENST00000330258.3:c.1801C>T	p.Arg601Ter	p.R601*	ENST00000330258	NM_152424.3	601	Cga/Tga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	66	261	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	116	205	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115750	8115750	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	551	691	3	ENST00000346208.3:c.1096C>T	p.Arg366Ter	p.R366*	ENST00000346208		366	Cga/Tga																																																																															
CBFB	865	MSKCC	GRCh37	16	67100663	67100663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	351	387	0	ENST00000412916.2:c.361G>A	p.Gly121Ser	p.G121S	ENST00000412916		121	Ggt/Agt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739066	40739066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	56	228	0	ENST00000373198.4:c.3218G>A	p.Gly1073Asp	p.G1073D	ENST00000373198	NM_133170.3	1073	gGc/gAc																																																																															
AKT2	208	MSKCC	GRCh37	19	40761126	40761127	+	inframe_insertion	In_Frame_Ins	INS	-	-	TATGACAAAGGTGTTGGGTCGCGGCCTCTCGGTCTTCATCAGCTGGCA			P-0003950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	112	255	0	ENST00000392038.2:c.178_225dup	p.Cys60_Ile75dup	p.C60_I75dup	ENST00000392038	NM_001626.4	60	-/TGCCAGCTGATGAAGACCGAGAGGCCGCGACCCAACACCTTTGTCATA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0003967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	99	195	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TET1	80312	MSKCC	GRCh37	10	70333081	70333081	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	36	328	0	ENST00000373644.4:c.986T>A	p.Phe329Tyr	p.F329Y	ENST00000373644	NM_030625.2	329	tTc/tAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920416	114920416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	85	350	0	ENST00000543371.1:c.1357C>T	p.Leu453Phe	p.L453F	ENST00000543371	NM_001198531.1	453	Ctt/Ttt																																																																															
RB1	5925	MSKCC	GRCh37	13	49039206	49039206	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	224	280	0	ENST00000267163.4:c.2284C>T	p.Gln762Ter	p.Q762*	ENST00000267163	NM_000321.2	762	Cag/Tag																																																																															
AR	367	MSKCC	GRCh37	X	66942741	66942741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	85	520	0	ENST00000374690.3:c.2522G>T	p.Arg841Leu	p.R841L	ENST00000374690	NM_000044.3	841	cGt/cTt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303190	15303190	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs143385744		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	19	342	0	ENST00000263388.2:c.338G>A	p.Arg113Gln	p.R113Q	ENST00000263388	NM_000435.2	113	cGa/cAa																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202065	67202065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	30	235	0	ENST00000312629.5:c.1168G>A	p.Val390Met	p.V390M	ENST00000312629	NM_003952.2	390	Gtg/Atg																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727451	66727451	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519729		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	10	191	0	ENST00000307102.5:c.167A>C	p.Gln56Pro	p.Q56P	ENST00000307102	NM_002755.3	56	cAg/cCg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137785	64137785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	18	274	0	ENST00000334205.4:c.1886G>A	p.Arg629His	p.R629H	ENST00000334205	NM_003942.2	629	cGc/cAc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	24	159	0	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138426123	138426123	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1217537873		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	24	185	0	ENST00000289153.2:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000289153	NM_006219.2	470	Gaa/Aaa																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	22	199	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																															
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	35	497	0	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	19	170	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
CIC	23152	MSKCC	GRCh37	19	42791757	42791757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	20	284	0	ENST00000575354.2:c.643C>T	p.Arg215Trp	p.R215W	ENST00000575354	NM_015125.3	215	Cgg/Tgg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564387	139564387	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146989870		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	27	206	0	ENST00000308874.7:c.335G>A	p.Arg112Gln	p.R112Q	ENST00000308874		112	cGg/cAg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	18	133	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
AXL	558	MSKCC	GRCh37	19	41744385	41744385	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	27	349	0	ENST00000301178.4:c.1010delC	p.Pro337LeufsTer29	p.P337Lfs*29	ENST00000301178	NM_021913.4	335	ggC/gg																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983228	149983228	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	24	222	0	ENST00000253339.5:c.3030delT	p.Phe1010LeufsTer10	p.F1010Lfs*10	ENST00000253339		1010	ttT/tt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777120	9777120	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	29	467	0	ENST00000377346.4:c.884A>C	p.Gln295Pro	p.Q295P	ENST00000377346	NM_005026.3	295	cAg/cCg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259486	16259486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	17	156	0	ENST00000375759.3:c.6751G>A	p.Ala2251Thr	p.A2251T	ENST00000375759	NM_015001.2	2251	Gca/Aca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106355	27106355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	19	187	0	ENST00000324856.7:c.5966G>A	p.Arg1989Gln	p.R1989Q	ENST00000324856	NM_006015.4	1989	cGa/cAa																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726490	46726490	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149246216		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	15	196	0	ENST00000371975.4:c.569C>T	p.Thr190Met	p.T190M	ENST00000371975	NM_003579.3	190	aCg/aTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65323452	65323452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	24	153	0	ENST00000342505.4:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000342505	NM_002227.2	449	Gcc/Acc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206651636	206651636	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	26	295	0	ENST00000367120.3:c.946C>A	p.Leu316Met	p.L316M	ENST00000367120	NM_014002.3	316	Ctg/Atg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47641507	47641507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	53	520	0	ENST00000233146.2:c.892C>T	p.Gln298Ter	p.Q298*	ENST00000233146	NM_000251.2	298	Cag/Tag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662211	227662211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	24	265	0	ENST00000305123.5:c.1244C>T	p.Ser415Leu	p.S415L	ENST00000305123	NM_005544.2	415	tCg/tTg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713292	30713292	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150022335		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	23	160	0	ENST00000359013.4:c.692C>T	p.Thr231Met	p.T231M	ENST00000359013	NM_001024847.2	231	aCg/aTg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185183540	185183540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	22	191	0	ENST00000265026.3:c.1394C>T	p.Ala465Val	p.A465V	ENST00000265026	NM_004721.4	465	gCg/gTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187527306	187527306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	13	192	0	ENST00000441802.2:c.10268C>T	p.Thr3423Met	p.T3423M	ENST00000441802	NM_005245.3	3423	aCg/aTg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523313	176523313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	19	213	0	ENST00000292408.4:c.1970C>T	p.Ala657Val	p.A657V	ENST00000292408	NM_213647.1	657	gCg/gTg																																																																															
SMO	6608	MSKCC	GRCh37	7	128829305	128829305	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	32	492	0	ENST00000249373.3:c.313A>G	p.Lys105Glu	p.K105E	ENST00000249373	NM_005631.4	105	Aag/Gag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738073	145738073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	51	282	0	ENST00000428558.2:c.2837G>A	p.Arg946His	p.R946H	ENST00000428558	NM_004260.3	946	cGt/cAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399156	139399156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	19	224	0	ENST00000277541.6:c.4987C>T	p.Arg1663Trp	p.R1663W	ENST00000277541	NM_017617.3	1663	Cgg/Tgg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123310860	123310860	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147987917		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	37	354	2	ENST00000358487.5:c.568C>T	p.Arg190Trp	p.R190W	ENST00000358487	NM_000141.4	190	Cgg/Tgg																																																																															
MLL2	8085	MSKCC	GRCh37	12	49424188	49424188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	14	146	0	ENST00000301067.7:c.13874C>T	p.Ser4625Leu	p.S4625L	ENST00000301067	NM_003482.3	4625	tCg/tTg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56494996	56494996	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201958747		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	17	202	0	ENST00000267101.3:c.3353G>A	p.Arg1118Gln	p.R1118Q	ENST00000267101	NM_001982.3	1118	cGg/cAg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861781	57861781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	54	616	0	ENST00000228682.2:c.1082C>T	p.Pro361Leu	p.P361L	ENST00000228682	NM_005269.2	361	cCg/cTg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426812	121426812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	18	323	0	ENST00000257555.6:c.503G>A	p.Arg168His	p.R168H	ENST00000257555		168	cGc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133250211	133250211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	22	333	0	ENST00000320574.5:c.1309G>A	p.Val437Met	p.V437M	ENST00000320574	NM_006231.2	437	Gtg/Atg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28611336	28611336	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201905189		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	44	281	0	ENST00000241453.7:c.1295C>T	p.Thr432Met	p.T432M	ENST00000241453	NM_004119.2	432	aCg/aTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121873	2121873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	17	225	0	ENST00000219476.3:c.2035G>A	p.Val679Met	p.V679M	ENST00000219476	NM_000548.3	679	Gtg/Atg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89371644	89371644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	29	432	0	ENST00000301030.4:c.196G>A	p.Ala66Thr	p.A66T	ENST00000301030	NM_001256183.1	66	Gcc/Acc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805092	89805092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	24	240	0	ENST00000389301.3:c.4285G>A	p.Asp1429Asn	p.D1429N	ENST00000389301	NM_000135.2	1429	Gac/Aac																																																																															
FANCA	2175	MSKCC	GRCh37	16	89858916	89858916	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142620413		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	22	197	0	ENST00000389301.3:c.1046C>T	p.Ala349Val	p.A349V	ENST00000389301	NM_000135.2	349	gCg/gTg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131277	17131277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	40	383	2	ENST00000285071.4:c.175C>T	p.Arg59Cys	p.R59C	ENST00000285071	NM_144997.5	59	Cgt/Tgt																																																																															
FLCN	201163	MSKCC	GRCh37	17	17131387	17131387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	21	266	0	ENST00000285071.4:c.65C>T	p.Thr22Met	p.T22M	ENST00000285071	NM_144997.5	22	aCg/aTg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682455	37682455	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	23	222	0	ENST00000447079.4:c.3646C>T	p.Gln1216Ter	p.Q1216*	ENST00000447079	NM_015083.1	1216	Cag/Tag																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40353821	40353821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	41	654	0	ENST00000293328.3:c.2299C>T	p.Arg767Trp	p.R767W	ENST00000293328	NM_012448.3	767	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436097	56436097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	23	218	2	ENST00000407977.2:c.1040G>A	p.Gly347Asp	p.G347D	ENST00000407977		347	gGc/gAc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612359	1612359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	49	646	1	ENST00000344749.5:c.1660C>T	p.Arg554Trp	p.R554W	ENST00000344749	NM_001136139.2	554	Cgg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244106	5244106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	21	487	0	ENST00000357368.4:c.1376G>A	p.Gly459Asp	p.G459D	ENST00000357368	NM_002850.3	459	gGc/gAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5273534	5273534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	33	385	0	ENST00000357368.4:c.298C>T	p.Arg100Trp	p.R100W	ENST00000357368	NM_002850.3	100	Cgg/Tgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600516	10600516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	24	258	0	ENST00000171111.5:c.1339C>T	p.Arg447Trp	p.R447W	ENST00000171111	NM_203500.1	447	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101911	11101911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	23	266	0	ENST00000344626.4:c.1331G>A	p.Arg444His	p.R444H	ENST00000344626	NM_003072.3	444	cGc/cAc																																																																															
AXL	558	MSKCC	GRCh37	19	41744408	41744408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	28	392	0	ENST00000301178.4:c.1028C>T	p.Thr343Met	p.T343M	ENST00000301178	NM_021913.4	343	aCg/aTg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714649	52714649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	19	256	0	ENST00000322088.6:c.407C>T	p.Ala136Val	p.A136V	ENST00000322088	NM_014225.5	136	gCg/gTg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546608	9546608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	30	315	0	ENST00000353224.5:c.1414G>T	p.Gly472Trp	p.G472W	ENST00000353224	NM_177990.2	472	Ggg/Tgg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023408	31023408	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	23	139	1	ENST00000375687.4:c.2893C>T	p.Arg965Ter	p.R965*	ENST00000375687	NM_015338.5	965	Cga/Tga																																																																															
SRC	6714	MSKCC	GRCh37	20	36031696	36031696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	23	373	1	ENST00000358208.4:c.1525C>T	p.Arg509Trp	p.R509W	ENST00000358208		509	Cgg/Tgg																																																																															
ERG	2078	MSKCC	GRCh37	21	39755732	39755732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	14	156	0	ENST00000288319.7:c.1033G>A	p.Asp345Asn	p.D345N	ENST00000288319	NM_182918.3	345	Gac/Aac																																																																															
ATRX	546	MSKCC	GRCh37	X	76890150	76890150	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	39	278	0	ENST00000373344.5:c.4744del	p.Thr1582GlnfsTer24	p.T1582Qfs*24	ENST00000373344	NM_000489.3	1582	Aca/ca																																																																															
JAK3	3718	MSKCC	GRCh37	19	17946828	17946828	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	32	284	0	ENST00000458235.1:c.1819del	p.Ala607ProfsTer2	p.A607Pfs*2	ENST00000458235	NM_000215.3	607	Gcc/cc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440729	56440729	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	24	324	0	ENST00000407977.2:c.489del	p.Ile164SerfsTer9	p.I164Sfs*9	ENST00000407977		163	ttG/tt																																																																															
CCND1	595	MSKCC	GRCh37	11	69456227	69456229	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	21	281	0	ENST00000227507.2:c.148_150del	p.Lys50del	p.K50del	ENST00000227507	NM_053056.2	49	cAGAag/cag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348566	89348569	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	66	904	0	ENST00000301030.4:c.4381_4384del	p.Lys1461GlufsTer69	p.K1461Efs*69	ENST00000301030	NM_001256183.1	1461	AAGAga/ga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	49	703	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138461543	138461543	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	34	335	0	ENST00000289153.2:c.478del	p.Ile160SerfsTer13	p.I160Sfs*13	ENST00000289153	NM_006219.2	160	Atc/tc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923670	72923670	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	34	581	0	ENST00000268489.5:c.3408del	p.Gln1137ArgfsTer50	p.Q1137Rfs*50	ENST00000268489	NM_006885.3	1136	ggG/gg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347748	347748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	26	292	0	ENST00000262320.3:c.1758delC	p.Asn587ThrfsTer118	p.N587Tfs*118	ENST00000262320	NM_003502.3	586	ccC/cc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120697	115120697	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	26	465	0	ENST00000257566.3:c.309del	p.Lys104ArgfsTer35	p.K104Rfs*35	ENST00000257566	NM_016569.3	103	ccC/cc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			574	240	556	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961367	15961367	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0004028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			234	205	489	1	ENST00000268712.3:c.6022A>T	p.Arg2008Ter	p.R2008*	ENST00000268712	NM_006311.3	2008	Aga/Tga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161663	56161664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTGT			P-0004028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			694	180	451	0	ENST00000399503.3:c.1162_1166dup	p.Gln390CysfsTer48	p.Q390Cfs*48	ENST00000399503	NM_005921.1	387	agt/agTTTGTt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56167803	56167804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			561	508	503	1	ENST00000399503.3:c.1369dup	p.Thr457AsnfsTer4	p.T457Nfs*4	ENST00000399503	NM_005921.1	456	-/A																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952088	+	missense_variant	Missense_Mutation	ONP	ATCA	ATCA	GTCG			P-0004028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			746	234	481	0	ENST00000263967.3:c.3140_3143delinsGTCG	p.His1047_His1048delinsArgArg	p.H1047_H1048delinsRR	ENST00000263967	NM_006218.2	1047	cATCAt/cGTCGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	343	130	0	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499374	89499374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	99	110	0	ENST00000336596.2:c.2544C>G	p.Asp848Glu	p.D848E	ENST00000336596	NM_005233.5	848	gaC/gaG																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66233078	66233078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	139	115	0	ENST00000273854.3:c.1921C>A	p.His641Asn	p.H641N	ENST00000273854	NM_004439.5	641	Cac/Aac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356212	66356212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	105	108	0	ENST00000273854.3:c.1285G>T	p.Val429Leu	p.V429L	ENST00000273854	NM_004439.5	429	Gtg/Ttg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467548	66467548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	150	133	0	ENST00000273854.3:c.721G>T	p.Ala241Ser	p.A241S	ENST00000273854	NM_004439.5	241	Gct/Tct																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729671	41729671	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	232	293	0	ENST00000242208.4:c.858G>C	p.Glu286Asp	p.E286D	ENST00000242208	NM_002192.2	286	gaG/gaC																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275842	38275842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	90	81	1	ENST00000425967.3:c.1427G>A	p.Arg476Gln	p.R476Q	ENST00000425967	NM_001174067.1	476	cGg/cAg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5066676	5066676	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	198	124	0	ENST00000381652.3:c.1215-2A>G		p.X405_splice	ENST00000381652	NM_004972.3	405																																																																																
BRCA1	672	MSKCC	GRCh37	17	41246440	41246440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	169	163	0	ENST00000357654.3:c.1108G>A	p.Val370Ile	p.V370I	ENST00000357654	NM_007294.3	370	Gtt/Att																																																																															
STK11	6794	MSKCC	GRCh37	19	1220493	1220493	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	138	110	0	ENST00000326873.7:c.586G>C	p.Gly196Arg	p.G196R	ENST00000326873	NM_000455.4	196	Ggc/Cgc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599910	10599910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	231	177	0	ENST00000171111.5:c.1666G>A	p.Ala556Thr	p.A556T	ENST00000171111	NM_203500.1	556	Gcc/Acc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243529	46243529	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	233	91	0	ENST00000334344.6:c.1883del	p.Pro628LeufsTer19	p.P628Lfs*19	ENST00000334344	NM_152641.2	628	Cct/ct																																																																															
GNAS	2778	MSKCC	GRCh37	20	57478605	57478606	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGG			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	90	68	0	ENST00000371085.3:c.279_281dup	p.Gln93_Asp94insGlu	p.Q93_D94insE	ENST00000371085	NM_000516.4	93	cag/cAGGag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691800	30691801	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCATGAC			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	137	129	0	ENST00000359013.4:c.380_386dup	p.Lys130Ter	p.K130*	ENST00000359013	NM_001024847.2	126	tgc/tgCCATGACc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	93	265	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176050327	176050327	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	77	221	0	ENST00000367669.3:c.1238A>G	p.Tyr413Cys	p.Y413C	ENST00000367669	NM_022457.5	413	tAt/tGt																																																																															
BARD1	580	MSKCC	GRCh37	2	215632356	215632356	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	64	224	2	ENST00000260947.4:c.1418A>T	p.His473Leu	p.H473L	ENST00000260947	NM_000465.2	473	cAc/cTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518948	187518948	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	83	233	0	ENST00000441802.2:c.12258-2A>T		p.X4086_splice	ENST00000441802	NM_005245.3	4086																																																																																
TERT	7015	MSKCC	GRCh37	5	1294143	1294143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	37	176	0	ENST00000310581.5:c.858G>T	p.Glu286Asp	p.E286D	ENST00000310581	NM_198253.2	286	gaG/gaT																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876380	35876380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	67	156	0	ENST00000303115.3:c.1172G>A	p.Arg391Lys	p.R391K	ENST00000303115	NM_002185.3	391	aGg/aAg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056352	180056352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	36	262	0	ENST00000261937.6:c.892C>T	p.His298Tyr	p.H298Y	ENST00000261937	NM_182925.4	298	Cac/Tac																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864811	57864811	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	112	326	0	ENST00000228682.2:c.2288C>A	p.Pro763His	p.P763H	ENST00000228682	NM_005269.2	763	cCc/cAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68855966	68855966	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs35187787		P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	65	310	1	ENST00000261769.5:c.1774G>T	p.Ala592Ser	p.A592S	ENST00000261769	NM_004360.3	592	Gcc/Tcc																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804181	46804181	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	96	325	0	ENST00000290295.7:c.826G>T	p.Ala276Ser	p.A276S	ENST00000290295	NM_006361.5	276	Gcc/Tcc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220370	1220370	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	57	172	0	ENST00000326873.7:c.465-2A>C		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602298	10602298	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	39	189	0	ENST00000171111.5:c.1280C>A	p.Ala427Asp	p.A427D	ENST00000171111	NM_203500.1	427	gCc/gAc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52725351	52725351	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	42	149	0	ENST00000322088.6:c.1519-1G>T		p.X507_splice	ENST00000322088	NM_014225.5	507																																																																																
ARID2	196528	MSKCC	GRCh37	12	46230626	46230626	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	88	234	0	ENST00000334344.6:c.878delT	p.Leu293Ter	p.L293*	ENST00000334344	NM_152641.2	292	aTt/at																																																																															
MTOR	2475	MSKCC	GRCh37	1	11210277	11210277	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	67	262	0	ENST00000361445.4:c.4476A>C	p.Gln1492His	p.Q1492H	ENST00000361445	NM_004958.3	1492	caA/caC																																																																															
PMS1	5378	MSKCC	GRCh37	2	190717415	190717415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	185	263	0	ENST00000441310.2:c.734C>T	p.Ala245Val	p.A245V	ENST00000441310	NM_000534.4	245	gCa/gTa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155048	55155048	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	313	248	0	ENST00000257290.5:c.2757C>A	p.Asp919Glu	p.D919E	ENST00000257290	NM_006206.4	919	gaC/gaA																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992601	72992601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	120	310	0	ENST00000268489.5:c.1444G>A	p.Glu482Lys	p.E482K	ENST00000268489	NM_006885.3	482	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0004168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	206	217	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117435	115117436	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0004168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	143	196	0	ENST00000257566.3:c.738_739del	p.His246GlnfsTer13	p.H246Qfs*13	ENST00000257566	NM_016569.3	246	caCAaa/caaa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552762	18552762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	28	306	0	ENST00000266497.5:c.2173C>G	p.Leu725Val	p.L725V	ENST00000266497		725	Ctt/Gtt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16062086	16062089	+	frameshift_variant	Frame_Shift_Del	DEL	ATAA	ATAA	-			P-0004178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	100	443	0	ENST00000268712.3:c.717_720del	p.Ile239MetfsTer45	p.I239Mfs*45	ENST00000268712	NM_006311.3	239	atTTAT/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	194	233	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751502	57751502	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	158	237	0	ENST00000274289.3:c.1489C>G	p.Leu497Val	p.L497V	ENST00000274289	NM_006622.3	497	Ctg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7573984	7573984	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	144	246	0	ENST00000269305.4:c.1043T>G	p.Leu348Trp	p.L348W	ENST00000269305	NM_001126112.2	348	tTg/tGg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591877	48591885	+	inframe_deletion	In_Frame_Del	DEL	TTGTTACTG	TTGTTACTG	-			P-0004206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	124	234	0	ENST00000342988.3:c.1043_1051del	p.Val348_Val350del	p.V348_V350del	ENST00000342988	NM_005359.5	347	aTTGTTACTGtt/att																																																																															
ATM	472	MSKCC	GRCh37	11	108206587	108206587	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	200	361	1	ENST00000278616.4:c.8167A>T	p.Arg2723Ter	p.R2723*	ENST00000278616	NM_000051.3	2723	Aga/Tga																																																																															
AXL	558	MSKCC	GRCh37	19	41743988	41743988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	69	576	2	ENST00000301178.4:c.923G>A	p.Arg308His	p.R308H	ENST00000301178	NM_021913.4	308	cGc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0004279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	259	401	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	31	262	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579533	7579533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	39	280	0	ENST00000269305.4:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000269305	NM_001126112.2	52	Caa/Taa																																																																															
ATR	545	MSKCC	GRCh37	3	142297500	142297500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	31	319	0	ENST00000350721.4:c.47G>A	p.Arg16Gln	p.R16Q	ENST00000350721	NM_001184.3	16	cGg/cAg																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025826	1025826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	25	315	0	ENST00000358495.3:c.704C>T	p.Ala235Val	p.A235V	ENST00000358495	NM_134424.2	235	gCg/gTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244706	46244706	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	58	415	0	ENST00000334344.6:c.2800C>T	p.Gln934Ter	p.Q934*	ENST00000334344	NM_152641.2	934	Caa/Taa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719580	61719580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	29	537	0	ENST00000401558.2:c.1603G>T	p.Asp535Tyr	p.D535Y	ENST00000401558	NM_003400.3	535	Gat/Tat																																																																															
MST1R	4486	MSKCC	GRCh37	3	49935629	49935629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	22	459	0	ENST00000296474.3:c.1735G>A	p.Gly579Arg	p.G579R	ENST00000296474	NM_002447.2	579	Gga/Aga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822064	72822064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	24	433	0	ENST00000268489.5:c.10111C>A	p.Leu3371Met	p.L3371M	ENST00000268489	NM_006885.3	3371	Ctg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0004292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	55	497	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
BBC3	27113	MSKCC	GRCh37	19	47735825	47735825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	26	505	0	ENST00000449228.1:c.35C>T	p.Pro12Leu	p.P12L	ENST00000449228	NM_001127240.2	12	cCa/cTa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711912	89711913	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	33	468	0	ENST00000371953.3:c.532dup	p.Tyr178LeufsTer2	p.Y178Lfs*2	ENST00000371953	NM_000314.4	177	tat/taTt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2969697	2969697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004299-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1099	326	588	0	ENST00000396946.4:c.1582G>A	p.Glu528Lys	p.E528K	ENST00000396946	NM_032415.4	528	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0004299-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			405	591	632	2	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509436	106509436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004299-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			636	202	565	2	ENST00000359195.3:c.1430G>A	p.Arg477His	p.R477H	ENST00000359195	NM_002649.2	477	cGt/cAt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851779	134851779	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004299-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			981	77	580	0	ENST00000398015.3:c.1185C>A	p.Ser395Arg	p.S395R	ENST00000398015	NM_004441.4	395	agC/agA																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748282	41748282	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004299-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	111	591	1	ENST00000226382.2:c.487G>T	p.Ala163Ser	p.A163S	ENST00000226382	NM_003924.3	163	Gca/Tca																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045670	26045670	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004299-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1839	103	1064	0	ENST00000540144.1:c.32C>G	p.Ser11Cys	p.S11C	ENST00000540144	NM_003531.2	11	tCt/tGt																																																																															
MYC	4609	MSKCC	GRCh37	8	128750901	128750901	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004299-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1633	102	576	0	ENST00000377970.2:c.438G>T	p.Gln146His	p.Q146H	ENST00000377970	NM_002467.4	146	caG/caT																																																																															
MLL	4297	MSKCC	GRCh37	11	118355613	118355613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004299-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			730	68	535	0	ENST00000534358.1:c.4255G>A	p.Gly1419Ser	p.G1419S	ENST00000534358	NM_005933.3	1419	Ggc/Agc																																																																															
POLE	5426	MSKCC	GRCh37	12	133253208	133253208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004299-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			838	149	539	0	ENST00000320574.5:c.833C>T	p.Thr278Met	p.T278M	ENST00000320574	NM_006231.2	278	aCg/aTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32936751	32936751	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004299-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			782	99	396	0	ENST00000380152.3:c.7897G>C	p.Ala2633Pro	p.A2633P	ENST00000380152		2633	Gct/Cct																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435864	110435864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004299-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			183	27	107	0	ENST00000375856.3:c.2537G>A	p.Gly846Glu	p.G846E	ENST00000375856	NM_003749.2	846	gGg/gAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0004303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	27	372	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288975	33288975	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	120	186	0	ENST00000374542.5:c.577C>T	p.Gln193Ter	p.Q193*	ENST00000374542	NM_001141970.1	193	Cag/Tag																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575021	64575035	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACCTGCTGCAGCTG	CACCTGCTGCAGCTG	-			P-0004307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	73	232	0	ENST00000337652.1:c.787_798+3del		p.X263_splice	ENST00000337652	NM_130803.2	263																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0004323-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	48	228	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0004323-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	148	247	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257182	16257182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004323-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	117	385	0	ENST00000375759.3:c.4447G>A	p.Val1483Ile	p.V1483I	ENST00000375759	NM_015001.2	1483	Gtt/Att																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960136	134960136	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004323-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	71	281	0	ENST00000398015.3:c.2493A>C	p.Gln831His	p.Q831H	ENST00000398015	NM_004441.4	831	caA/caC																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289089	33289089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004323-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	136	291	0	ENST00000374542.5:c.463C>T	p.Pro155Ser	p.P155S	ENST00000374542	NM_001141970.1	155	Ccc/Tcc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610003	81610003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004323-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	75	237	0	ENST00000298171.2:c.1601G>A	p.Arg534His	p.R534H	ENST00000298171	NM_000369.2	534	cGc/cAc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37665992	37665992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004323-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	114	381	0	ENST00000447079.4:c.2644C>T	p.Arg882Trp	p.R882W	ENST00000447079	NM_015083.1	882	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11137009	11137009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004323-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	161	384	1	ENST00000344626.4:c.3202G>A	p.Gly1068Ser	p.G1068S	ENST00000344626	NM_003072.3	1068	Ggc/Agc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	22	143	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751908	57751909	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	29	231	0	ENST00000274289.3:c.1328dup	p.Asp443GlufsTer15	p.D443Efs*15	ENST00000274289	NM_006622.3	443	gat/gaAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	29	480	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0004363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	18	204	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0004363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	64	576	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0004363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	115	486	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603023	48603023	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	24	235	0	ENST00000342988.3:c.1324C>T	p.Gln442Ter	p.Q442*	ENST00000342988	NM_005359.5	442	Cag/Tag																																																																															
IL10	3586	MSKCC	GRCh37	1	206941989	206941989	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs142726516		P-0004363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	35	378	1	ENST00000423557.1:c.529C>T	p.Arg177Ter	p.R177*	ENST00000423557	NM_000572.2	177	Cga/Tga																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778162	27778162	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	67	1172	0	ENST00000369163.2:c.311T>C	p.Leu104Pro	p.L104P	ENST00000369163	NM_003536.2	104	cTc/cCc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302962	15302962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	24	310	1	ENST00000263388.2:c.488G>A	p.Arg163Gln	p.R163Q	ENST00000263388	NM_000435.2	163	cGg/cAg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119071	70119071	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	18	282	0	ENST00000245479.2:c.643del	p.Ser215ProfsTer4	p.S215Pfs*4	ENST00000245479	NM_000346.3	215	Tcc/cc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248179	110248184	+	inframe_deletion	In_Frame_Del	DEL	GTCCCA	GTCCCA	-			P-0004363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	44	305	0	ENST00000374672.4:c.1288_1293del	p.Trp430_Asp431del	p.W430_D431del	ENST00000374672	NM_004235.4	430	TGGGAC/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			578	83	501	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			436	103	577	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188865	32188865	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138205668		P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			417	52	511	0	ENST00000375023.3:c.689G>A	p.Arg230His	p.R230H	ENST00000375023	NM_004557.3	230	cGt/cAt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646627	23646627	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			266	25	333	1	ENST00000261584.4:c.1240C>T	p.Arg414Ter	p.R414*	ENST00000261584	NM_024675.3	414	Cga/Tga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168695	32168695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143103753		P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			730	104	593	0	ENST00000375023.3:c.4228C>T	p.Arg1410Cys	p.R1410C	ENST00000375023	NM_004557.3	1410	Cgc/Tgc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			638	91	553	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628248	187628248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200097846		P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			308	46	415	0	ENST00000441802.2:c.2734G>A	p.Val912Ile	p.V912I	ENST00000441802	NM_005245.3	912	Gtt/Att																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			534	114	517	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12037474	12037474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			534	16	421	1	ENST00000396373.4:c.1105C>T	p.Arg369Trp	p.R369W	ENST00000396373	NM_001987.4	369	Cgg/Tgg																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			805	233	710	5	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs794727798		P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			651	114	577	0	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			169	48	263	4	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			242	35	294	1	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130334	11130334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			622	91	644	2	ENST00000344626.4:c.2573C>T	p.Thr858Met	p.T858M	ENST00000344626	NM_003072.3	858	aCg/aTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			311	111	296	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442575	52442575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			623	69	338	1	ENST00000460680.1:c.170G>A	p.Arg57Gln	p.R57Q	ENST00000460680	NM_004656.3	57	cGg/cAg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78681725	78681725	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			659	88	574	1	ENST00000306801.3:c.433C>T	p.Arg145Ter	p.R145*	ENST00000306801	NM_020761.2	145	Cga/Tga																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25497874	25497874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			639	81	508	1	ENST00000264709.3:c.575C>T	p.Ala192Val	p.A192V	ENST00000264709	NM_175629.2	192	gCg/gTg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871286	35871286	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145210284		P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			327	31	306	0	ENST00000303115.3:c.508C>T	p.Arg170Cys	p.R170C	ENST00000303115	NM_002185.3	170	Cgc/Tgc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37686961	37686961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			657	114	543	2	ENST00000447079.4:c.3865G>A	p.Ala1289Thr	p.A1289T	ENST00000447079	NM_015083.1	1289	Gcc/Acc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922694	44922694	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			302	74	282	0	ENST00000377967.4:c.1555C>T	p.Arg519Ter	p.R519*	ENST00000377967	NM_021140.2	519	Cga/Tga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346901	89346901	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1455558820		P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			376	51	428	0	ENST00000301030.4:c.6049G>A	p.Ala2017Thr	p.A2017T	ENST00000301030	NM_001256183.1	2017	Gcc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056251	27056251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			528	74	493	0	ENST00000324856.7:c.1247G>A	p.Gly416Glu	p.G416E	ENST00000324856	NM_006015.4	416	gGg/gAg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797375	45797375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			613	91	617	0	ENST00000372115.3:c.1102G>A	p.Ala368Thr	p.A368T	ENST00000372115	NM_001048171.1	368	Gcc/Acc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176118188	176118188	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			220	34	343	0	ENST00000367669.3:c.785A>G	p.Gln262Arg	p.Q262R	ENST00000367669	NM_022457.5	262	cAg/cGg																																																																															
VHL	7428	MSKCC	GRCh37	3	10191473	10191473	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			429	60	405	0	ENST00000256474.2:c.466T>C	p.Tyr156His	p.Y156H	ENST00000256474	NM_000551.3	156	Tat/Cat																																																																															
RHOA	387	MSKCC	GRCh37	3	49399972	49399972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			683	129	624	1	ENST00000418115.1:c.365G>A	p.Arg122Gln	p.R122Q	ENST00000418115	NM_001664.2	122	cGg/cAg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52696244	52696244	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			575	103	653	1	ENST00000394830.3:c.433C>A	p.Leu145Ile	p.L145I	ENST00000394830	NM_018313.4	145	Ctt/Att																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808331	1808331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			551	12	691	1	ENST00000260795.2:c.2089G>A	p.Gly697Ser	p.G697S	ENST00000260795		697	Ggc/Agc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176707731	176707731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			659	45	603	1	ENST00000439151.2:c.5788C>T	p.Arg1930Cys	p.R1930C	ENST00000439151	NM_022455.4	1930	Cgc/Tgc																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225474	26225474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1590	221	1134	3	ENST00000360408.1:c.92C>T	p.Pro31Leu	p.P31L	ENST00000360408	NM_003532.2	31	cCg/cTg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162394367	162394367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144032774		P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			626	72	636	2	ENST00000366898.1:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000366898	NM_004562.2	234	cGg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273029	55273029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			615	84	546	1	ENST00000275493.2:c.3352G>A	p.Ala1118Thr	p.A1118T	ENST00000275493	NM_005228.3	1118	Gcg/Acg																																																																															
TCEB1	6921	MSKCC	GRCh37	8	74858939	74858939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			526	46	493	2	ENST00000284811.8:c.265G>A	p.Glu89Lys	p.E89K	ENST00000284811		89	Gag/Aag																																																																															
JAK2	3717	MSKCC	GRCh37	9	5080608	5080608	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			350	57	584	0	ENST00000381652.3:c.2359T>C	p.Cys787Arg	p.C787R	ENST00000381652	NM_004972.3	787	Tgt/Cgt																																																																															
SYK	6850	MSKCC	GRCh37	9	93624492	93624492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			488	66	473	0	ENST00000375746.1:c.583C>T	p.Arg195Ter	p.R195*	ENST00000375746	NM_001174167.1	195	Cga/Tga																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209363	98209363	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			422	82	513	0	ENST00000331920.6:c.4175A>G	p.Asn1392Ser	p.N1392S	ENST00000331920	NM_000264.3	1392	aAc/aGc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399781	139399781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			553	92	474	1	ENST00000277541.6:c.4567C>T	p.Arg1523Cys	p.R1523C	ENST00000277541	NM_017617.3	1523	Cgt/Tgt																																																																															
PGR	5241	MSKCC	GRCh37	11	100920694	100920694	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			446	71	804	2	ENST00000325455.5:c.2454C>A	p.Phe818Leu	p.F818L	ENST00000325455	NM_001202474.3	818	ttC/ttA																																																																															
MLL	4297	MSKCC	GRCh37	11	118362632	118362632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			459	55	451	0	ENST00000534358.1:c.4993C>T	p.Arg1665Cys	p.R1665C	ENST00000534358	NM_005933.3	1665	Cgc/Tgc																																																																															
MLL	4297	MSKCC	GRCh37	11	118377277	118377277	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			779	105	701	2	ENST00000534358.1:c.10670A>G	p.Lys3557Arg	p.K3557R	ENST00000534358	NM_005933.3	3557	aAg/aGg																																																																															
MLL2	8085	MSKCC	GRCh37	12	49425430	49425430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			712	93	708	1	ENST00000301067.7:c.13058C>T	p.Pro4353Leu	p.P4353L	ENST00000301067	NM_003482.3	4353	cCg/cTg																																																																															
MLL2	8085	MSKCC	GRCh37	12	49427983	49427983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			682	86	505	1	ENST00000301067.7:c.10607G>A	p.Arg3536His	p.R3536H	ENST00000301067	NM_003482.3	3536	cGc/cAc																																																																															
MDM2	4193	MSKCC	GRCh37	12	69229766	69229766	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			161	14	272	0	ENST00000462284.1:c.840+2T>C		p.X280_splice	ENST00000462284	NM_002392.5	280																																																																																
AKT1	207	MSKCC	GRCh37	14	105241276	105241276	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			536	31	510	0	ENST00000349310.3:c.632C>T	p.Thr211Ile	p.T211I	ENST00000349310	NM_001014432.1	211	aCa/aTa																																																																															
RARA	5914	MSKCC	GRCh37	17	38512474	38512474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			676	115	472	1	ENST00000254066.5:c.1385C>T	p.Pro462Leu	p.P462L	ENST00000254066	NM_000964.3	462	cCg/cTg																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805612	46805612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			847	142	883	2	ENST00000290295.7:c.344C>T	p.Thr115Met	p.T115M	ENST00000290295	NM_006361.5	115	aCg/aTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222943	5222943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			302	87	332	0	ENST00000357368.4:c.2860G>A	p.Val954Met	p.V954M	ENST00000357368	NM_002850.3	954	Gtg/Atg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350509	15350509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			447	58	308	1	ENST00000263377.2:c.3406C>T	p.His1136Tyr	p.H1136Y	ENST00000263377	NM_058243.2	1136	Cac/Tac																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350548	15350548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			420	97	332	0	ENST00000263377.2:c.3367G>A	p.Glu1123Lys	p.E1123K	ENST00000263377	NM_058243.2	1123	Gag/Aag																																																																															
JAK3	3718	MSKCC	GRCh37	19	17947971	17947971	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199600889		P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			793	43	582	0	ENST00000458235.1:c.1753G>A	p.Val585Met	p.V585M	ENST00000458235	NM_000215.3	585	Gtg/Atg																																																																															
AXL	558	MSKCC	GRCh37	19	41744030	41744030	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			696	100	627	0	ENST00000301178.4:c.965A>G	p.His322Arg	p.H322R	ENST00000301178	NM_021913.4	322	cAc/cGc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918994	50918994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			758	121	638	0	ENST00000440232.2:c.2731G>A	p.Asp911Asn	p.D911N	ENST00000440232	NM_002691.3	911	Gac/Aac																																																																															
BCL2L1	598	MSKCC	GRCh37	20	30253787	30253787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			929	142	619	0	ENST00000307677.4:c.667G>A	p.Val223Met	p.V223M	ENST00000307677	NM_138578.1	223	Gtg/Atg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385239	41385239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			742	211	613	0	ENST00000373198.4:c.722G>A	p.Arg241His	p.R241H	ENST00000373198	NM_133170.3	241	cGt/cAt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942125	81942125	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	130	874	0	ENST00000359376.3:c.1667del	p.Gly556AlafsTer42	p.G556Afs*42	ENST00000359376	NM_002661.3	554	acG/ac																																																																															
SETD2	29072	MSKCC	GRCh37	3	47155411	47155414	+	frameshift_variant	Frame_Shift_Del	DEL	GTGA	GTGA	-			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			619	72	774	1	ENST00000409792.3:c.4667_4670del	p.Leu1556GlnfsTer8	p.L1556Qfs*8	ENST00000409792	NM_014159.6	1556	cTCACa/ca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911358	32911358	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			524	151	935	0	ENST00000380152.3:c.2870del	p.Asn957IlefsTer3	p.N957Ifs*3	ENST00000380152		956	Aaa/aa																																																																															
ATR	545	MSKCC	GRCh37	3	142178109	142178110	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			299	56	387	0	ENST00000350721.4:c.7308dup	p.His2437SerfsTer2	p.H2437Sfs*2	ENST00000350721	NM_001184.3	2436	-/T																																																																															
BRD4	23476	MSKCC	GRCh37	19	15378305	15378305	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004387-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			646	38	766	0	ENST00000263377.2:c.481del	p.Ile161Ter	p.I161*	ENST00000263377	NM_058243.2	161	Ata/ta																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0004401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	178	396	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579585	7579585	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	184	226	0	ENST00000269305.4:c.102del	p.Leu35CysfsTer9	p.L35Cfs*9	ENST00000269305	NM_001126112.2	34	ccC/cc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187093	11187093	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	142	312	0	ENST00000361445.4:c.6325C>T	p.Arg2109Ter	p.R2109*	ENST00000361445	NM_004958.3	2109	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7573991	7573991	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	38	569	0	ENST00000269305.4:c.1036G>T	p.Glu346Ter	p.E346*	ENST00000269305	NM_001126112.2	346	Gag/Tag																																																																															
CIC	23152	MSKCC	GRCh37	19	42795241	42795241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	60	360	0	ENST00000575354.2:c.2321C>T	p.Ala774Val	p.A774V	ENST00000575354	NM_015125.3	774	gCg/gTg																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0004421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	86	711	0	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
TGFBR1	7046	MSKCC	GRCh37	9	101891349	101891349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	92	1006	2	ENST00000374994.4:c.310G>T	p.Asp104Tyr	p.D104Y	ENST00000374994	NM_004612.2	104	Gac/Tac																																																																															
EZH2	2146	MSKCC	GRCh37	7	148507499	148507499	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	78	962	0	ENST00000320356.2:c.1955C>G	p.Ser652Cys	p.S652C	ENST00000320356	NM_004456.4	652	tCt/tGt																																																																															
MED12	9968	MSKCC	GRCh37	X	70349610	70349610	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	143	1595	0	ENST00000374080.3:c.3772A>T	p.Ser1258Cys	p.S1258C	ENST00000374080		1258	Agt/Tgt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25976426	25976426	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	337	683	0	ENST00000435504.4:c.1119C>G	p.Phe373Leu	p.F373L	ENST00000435504		373	ttC/ttG																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413071	139413071	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	146	485	0	ENST00000277541.6:c.1071C>G	p.Phe357Leu	p.F357L	ENST00000277541	NM_017617.3	357	ttC/ttG																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624263	89624263	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	75	147	0	ENST00000371953.3:c.37A>T	p.Lys13Ter	p.K13*	ENST00000371953	NM_000314.4	13	Aaa/Taa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53254071	53254071	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0004434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	34	387	0	ENST00000375401.3:c.1A>T	p.Met1?	p.M1?	ENST00000375401	NM_004187.3	1	Atg/Ttg																																																																															
CDH1	999	MSKCC	GRCh37	16	68844167	68844167	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	254	477	0	ENST00000261769.5:c.755del	p.Val252GlufsTer30	p.V252Efs*30	ENST00000261769	NM_004360.3	252	gTa/ga																																																																															
RB1	5925	MSKCC	GRCh37	13	49050914	49050918	+	frameshift_variant	Frame_Shift_Del	DEL	CAACC	CAACC	-			P-0004434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	27	296	0	ENST00000267163.4:c.2599_2603del	p.Asn867SerfsTer2	p.N867Sfs*2	ENST00000267163	NM_000321.2	866	agCAACCct/agct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0004447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	177	397	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
KDR	3791	MSKCC	GRCh37	4	55976830	55976830	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148390587		P-0004447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	142	494	0	ENST00000263923.4:c.1082A>G	p.Glu361Gly	p.E361G	ENST00000263923	NM_002253.2	361	gAa/gGa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131977959	131977959	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	109	420	0	ENST00000265335.6:c.3842A>T	p.Glu1281Val	p.E1281V	ENST00000265335		1281	gAa/gTa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727442	66727442	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	91	360	0	ENST00000307102.5:c.158T>G	p.Phe53Cys	p.F53C	ENST00000307102	NM_002755.3	53	tTt/tGt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207036	1207038	+	frameshift_variant	Frame_Shift_Del	DEL	CGG	CGG	TT			P-0004447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	176	382	0	ENST00000326873.7:c.124_126delinsTT	p.Arg42LeufsTer9	p.R42Lfs*9	ENST00000326873	NM_000455.4	42	CGG/TT																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0004538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	221	356	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0004565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	131	506	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247204	153247204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	23	542	1	ENST00000281708.4:c.1598G>T	p.Cys533Phe	p.C533F	ENST00000281708	NM_033632.3	533	tGt/tTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340459	8340459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	29	379	0	ENST00000356435.5:c.5137G>A	p.Ala1713Thr	p.A1713T	ENST00000356435		1713	Gcc/Acc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900942	114900942	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0004565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	117	623	2	ENST00000543371.1:c.553-1G>T		p.X185_splice	ENST00000543371	NM_001198531.1	185																																																																																
BRD4	23476	MSKCC	GRCh37	19	15375540	15375540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	131	316	0	ENST00000263377.2:c.887C>T	p.Thr296Ile	p.T296I	ENST00000263377	NM_058243.2	296	aCc/aTc																																																																															
RB1	5925	MSKCC	GRCh37	13	48881473	48881473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	27	439	0	ENST00000267163.4:c.195del	p.Ile66TyrfsTer11	p.I66Yfs*11	ENST00000267163	NM_000321.2	65	aaG/aa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0004571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	39	482	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	141	749	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	31	483	2	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																															
REL	5966	MSKCC	GRCh37	2	61108985	61108985	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0004588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	32	290	0	ENST00000295025.8:c.10G>T	p.Gly4Cys	p.G4C	ENST00000295025	NM_002908.2	4	Ggt/Tgt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420202	88420203	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0004588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	40	642	0	ENST00000360948.2:c.2483_2484delinsTT	p.Gly828Val	p.G828V	ENST00000360948	NM_001012338.2	828	gGG/gTT																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139397639	139397639	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	382	391	0	ENST00000277541.6:c.5162T>G	p.Val1721Gly	p.V1721G	ENST00000277541	NM_017617.3	1721	gTg/gGg																																																																															
STK11	6794	MSKCC	GRCh37	19	1219367	1219367	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	425	414	0	ENST00000326873.7:c.419T>C	p.Leu140Pro	p.L140P	ENST00000326873	NM_000455.4	140	cTg/cCg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123788	11123788	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	356	368	0	ENST00000344626.4:c.2438C>T	p.Ser813Leu	p.S813L	ENST00000344626	NM_003072.3	813	tCa/tTa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390758	139390776	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGTCACGGGTGGGACCA	GCGGTCACGGGTGGGACCA	-			P-0004606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	247	327	0	ENST00000277541.6:c.7415_7433del	p.Leu2472GlnfsTer5	p.L2472Qfs*5	ENST00000277541	NM_017617.3	2472	cTGGTCCCACCCGTGACCGCa/ca																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0004626-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	203	249	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
CDH1	999	MSKCC	GRCh37	16	68847252	68847252	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004626-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	37	246	0	ENST00000261769.5:c.1174G>T	p.Val392Leu	p.V392L	ENST00000261769	NM_004360.3	392	Gta/Tta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	430	229	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0004646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	131	333	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
MALT1	10892	MSKCC	GRCh37	18	56376768	56376768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	83	618	0	ENST00000348428.3:c.808G>A	p.Glu270Lys	p.E270K	ENST00000348428	NM_006785.3	270	Gag/Aag																																																																															
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	88	496	0	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261655	16261655	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	55	368	0	ENST00000375759.3:c.8920C>A	p.Gln2974Lys	p.Q2974K	ENST00000375759	NM_015001.2	2974	Cag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261698	16261698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	47	343	2	ENST00000375759.3:c.8963C>T	p.Pro2988Leu	p.P2988L	ENST00000375759	NM_015001.2	2988	cCt/cTt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212286805	212286805	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	99	341	0	ENST00000342788.4:c.2891G>T	p.Arg964Ile	p.R964I	ENST00000342788	NM_005235.2	964	aGa/aTa																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402500	20402500	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	32	226	0	ENST00000346618.3:c.37C>A	p.Leu13Met	p.L13M	ENST00000346618	NM_001949.4	13	Ctg/Atg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992270	72992270	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	87	771	0	ENST00000268489.5:c.1775A>C	p.Asp592Ala	p.D592A	ENST00000268489	NM_006885.3	592	gAc/gCc																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770023	56770023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	58	362	0	ENST00000337432.4:c.19C>T	p.Arg7Cys	p.R7C	ENST00000337432	NM_058216.2	7	Cgc/Tgc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602488	10602488	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	75	285	0	ENST00000171111.5:c.1090G>T	p.Gly364Cys	p.G364C	ENST00000171111	NM_203500.1	364	Ggc/Tgc																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154394	2154395	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0004659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	48	457	2	ENST00000434045.2:c.533_534delinsAT	p.Ser178Tyr	p.S178Y	ENST00000434045	NM_001127598.1	178	tCC/tAT																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	39	356	1	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
MTOR	2475	MSKCC	GRCh37	1	11300457	11300457	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	26	351	0	ENST00000361445.4:c.1689T>A	p.His563Gln	p.H563Q	ENST00000361445	NM_004958.3	563	caT/caA																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021728	71021728	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	31	471	0	ENST00000318789.4:c.1630C>T	p.Arg544Ter	p.R544*	ENST00000318789	NM_032682.5	544	Cga/Tga																																																																															
RYBP	23429	MSKCC	GRCh37	3	72428200	72428200	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	44	315	0	ENST00000477973.2:c.690A>G	p.His231Arg	p.H231R	ENST00000477973	NM_012234.5	231	cAc/cGc																																																																															
KIT	3815	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	36	369	0	ENST00000288135.5:c.1676T>G	p.Val559Gly	p.V559G	ENST00000288135	NM_000222.2	559	gTt/gGt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289049	33289049	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	48	232	0	ENST00000374542.5:c.503C>A	p.Pro168His	p.P168H	ENST00000374542	NM_001141970.1	168	cCc/cAc																																																																															
MLL3	58508	MSKCC	GRCh37	7	152055678	152055678	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	184	488	0	ENST00000262189.6:c.244G>T	p.Glu82Ter	p.E82*	ENST00000262189	NM_170606.2	82	Gaa/Taa																																																																															
WT1	7490	MSKCC	GRCh37	11	32417827	32417827	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	52	348	0	ENST00000332351.3:c.1225C>T	p.Gln409Ter	p.Q409*	ENST00000332351	NM_024426.4	409	Cag/Tag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	461438	461438	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	90	453	0	ENST00000399788.2:c.1082A>C	p.Tyr361Ser	p.Y361S	ENST00000399788	NM_001042603.1	361	tAt/tCt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937543	32937543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	273	339	0	ENST00000380152.3:c.8204C>T	p.Pro2735Leu	p.P2735L	ENST00000380152		2735	cCc/cTc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347128	89347128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	40	548	0	ENST00000301030.4:c.5822C>T	p.Ala1941Val	p.A1941V	ENST00000301030	NM_001256183.1	1941	gCc/gTc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067352	37067352	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	100	437	0	ENST00000231790.2:c.1263T>G	p.Ser421Arg	p.S421R	ENST00000231790	NM_000249.3	421	agT/agG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	226	431	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	401	657	1	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1207118	1207118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	227	461	0	ENST00000326873.7:c.206C>A	p.Ser69Ter	p.S69*	ENST00000326873	NM_000455.4	69	tCg/tAg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61711080	61711080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	227	478	0	ENST00000401558.2:c.2669C>T	p.Ala890Val	p.A890V	ENST00000401558	NM_003400.3	890	gCa/gTa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876384	35876384	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	240	402	0	ENST00000303115.3:c.1176G>T	p.Glu392Asp	p.E392D	ENST00000303115	NM_002185.3	392	gaG/gaT																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287237	33287237	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	248	460	0	ENST00000374542.5:c.1860C>G	p.His620Gln	p.H620Q	ENST00000374542	NM_001141970.1	620	caC/caG																																																																															
ATM	472	MSKCC	GRCh37	11	108099967	108099967	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	206	358	0	ENST00000278616.4:c.248C>G	p.Ser83Ter	p.S83*	ENST00000278616	NM_000051.3	83	tCa/tGa																																																																															
B2M	567	MSKCC	GRCh37	15	45007855	45007855	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	168	355	0	ENST00000558401.1:c.302G>C	p.Arg101Pro	p.R101P	ENST00000558401	NM_004048.2	101	cGt/cCt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610247	10610247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	310	579	0	ENST00000171111.5:c.463G>T	p.Val155Phe	p.V155F	ENST00000171111	NM_203500.1	155	Gtc/Ttc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132400	11132400	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	290	554	0	ENST00000344626.4:c.2617-1G>A		p.X873_splice	ENST00000344626	NM_003072.3	873																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15299048	15299048	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	275	517	0	ENST00000263388.2:c.1490C>T	p.Ser497Leu	p.S497L	ENST00000263388	NM_000435.2	497	tCg/tTg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171705	36171705	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	127	410	0	ENST00000300305.3:c.860A>T	p.Tyr287Phe	p.Y287F	ENST00000300305		287	tAc/tTc																																																																															
MED12	9968	MSKCC	GRCh37	X	70348978	70348978	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	325	264	0	ENST00000374080.3:c.3490G>C	p.Asp1164His	p.D1164H	ENST00000374080		1164	Gac/Cac																																																																															
APC	324	MSKCC	GRCh37	5	112164654	112164654	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	181	270	0	ENST00000257430.4:c.1730del	p.Leu577Ter	p.L577*	ENST00000257430	NM_000038.5	576	gcT/gc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023339	31023340	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	163	360	0	ENST00000375687.4:c.2824_2825delinsTT	p.Gly942Leu	p.G942L	ENST00000375687	NM_015338.5	942	GGg/TTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0004730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	166	241	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
MAX	4149	MSKCC	GRCh37	14	65544678	65544680	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-			P-0004730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	219	319	0	ENST00000358664.4:c.246_248del	p.Gln83del	p.Q83del	ENST00000358664	NM_002382.4	82	caGCAa/caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750600586		P-0004743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	135	355	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																															
RB1	5925	MSKCC	GRCh37	13	48941628	48941628	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0004743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	136	314	0	ENST00000267163.4:c.940-2A>G		p.X314_splice	ENST00000267163	NM_000321.2	314																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178921551	178921551	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	383	262	0	ENST00000263967.3:c.1033A>C	p.Asn345His	p.N345H	ENST00000263967	NM_006218.2	345	Aat/Cat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0004743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	4428	339	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	44	396	0	ENST00000347630.2:c.397T>C	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	Ttc/Ctc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57857794	57857794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	93	491	0	ENST00000228682.2:c.113C>T	p.Pro38Leu	p.P38L	ENST00000228682	NM_005269.2	38	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	113	301	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	397	338	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0004786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	130	258	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
TET2	54790	MSKCC	GRCh37	4	106156747	106156747	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs572712965		P-0004786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	181	382	2	ENST00000380013.4:c.1648C>T	p.Arg550Ter	p.R550*	ENST00000380013	NM_001127208.2	550	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575117	48575117	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	45	376	0	ENST00000342988.3:c.311T>A	p.Leu104His	p.L104H	ENST00000342988	NM_005359.5	104	cTt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175182	112175198	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTGCTAATACCCTGC	TTCTGCTAATACCCTGC	G			P-0004786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	111	190	0	ENST00000257430.4:c.3891_3907delinsG	p.Asp1297GlufsTer3	p.D1297Efs*3	ENST00000257430	NM_000038.5	1297	gaTTCTGCTAATACCCTGCaa/gaGaa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0004792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	125	508	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45394805	45394805	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	124	398	0	ENST00000262160.6:c.544C>T	p.Arg182Ter	p.R182*	ENST00000262160	NM_005901.5	182	Cga/Tga																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	116	497	1	ENST00000262160.6:c.1391C>A	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tAa																																																																															
SOX2	6657	MSKCC	GRCh37	3	181431010	181431010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	145	430	1	ENST00000325404.1:c.862G>A	p.Ala288Thr	p.A288T	ENST00000325404	NM_003106.3	288	Gcc/Acc																																																																															
KIT	3815	MSKCC	GRCh37	4	55569926	55569926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	110	461	1	ENST00000288135.5:c.793G>A	p.Gly265Ser	p.G265S	ENST00000288135	NM_000222.2	265	Ggt/Agt																																																																															
MLL2	8085	MSKCC	GRCh37	12	49446455	49446455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	141	365	0	ENST00000301067.7:c.1150G>A	p.Glu384Lys	p.E384K	ENST00000301067	NM_003482.3	384	Gag/Aag																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482870	67482870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	232	354	0	ENST00000327367.4:c.1274C>T	p.Ser425Phe	p.S425F	ENST00000327367	NM_005902.3	425	tCt/tTt																																																																															
CDH1	999	MSKCC	GRCh37	16	68844127	68844127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	197	608	1	ENST00000261769.5:c.715G>A	p.Gly239Arg	p.G239R	ENST00000261769	NM_004360.3	239	Ggg/Agg																																																																															
NF1	4763	MSKCC	GRCh37	17	29508445	29508445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	152	494	0	ENST00000358273.4:c.592G>A	p.Ala198Thr	p.A198T	ENST00000358273	NM_001042492.2	198	Gca/Aca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790171	40790171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	81	257	0	ENST00000373198.4:c.2560C>T	p.Arg854Cys	p.R854C	ENST00000373198	NM_133170.3	854	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0004830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	195	261	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78681708	78681708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	201	303	2	ENST00000306801.3:c.416G>A	p.Arg139His	p.R139H	ENST00000306801	NM_020761.2	139	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108218045	108218045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	95	245	0	ENST00000278616.4:c.8624A>G	p.Asn2875Ser	p.N2875S	ENST00000278616	NM_000051.3	2875	aAt/aGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	218	330	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	145	240	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488694	212488694	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	239	362	0	ENST00000342788.4:c.2155A>C	p.Lys719Gln	p.K719Q	ENST00000342788	NM_005235.2	719	Aag/Cag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187558023	187558023	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0004860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	173	228	0	ENST00000441802.2:c.3688A>T	p.Arg1230Ter	p.R1230*	ENST00000441802	NM_005245.3	1230	Aga/Tga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56174910	56174910	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	243	322	0	ENST00000399503.3:c.2069A>T	p.Lys690Ile	p.K690I	ENST00000399503	NM_005921.1	690	aAa/aTa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056210	26056210	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	234	360	0	ENST00000343677.2:c.447G>C	p.Lys149Asn	p.K149N	ENST00000343677	NM_005319.3	149	aaG/aaC																																																																															
ETV1	2115	MSKCC	GRCh37	7	13978792	13978792	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1231	158	409	0	ENST00000405192.2:c.315A>C	p.Gln105His	p.Q105H	ENST00000405192	NM_001163147.1	105	caA/caC																																																																															
PAX5	5079	MSKCC	GRCh37	9	37034015	37034015	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	240	329	1	ENST00000358127.4:c.14A>C	p.Lys5Thr	p.K5T	ENST00000358127	NM_001280556.1	5	aAa/aCa																																																																															
POLE	5426	MSKCC	GRCh37	12	133226031	133226031	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	192	363	0	ENST00000320574.5:c.3866G>T	p.Arg1289Leu	p.R1289L	ENST00000320574	NM_006231.2	1289	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0004860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	308	438	0	ENST00000269305.4:c.560-2A>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
PAK7	57144	MSKCC	GRCh37	20	9560844	9560844	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	290	388	0	ENST00000353224.5:c.938A>T	p.Tyr313Phe	p.Y313F	ENST00000353224	NM_177990.2	313	tAc/tTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410913	63410913	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	326	293	0	ENST00000330258.3:c.2254G>T	p.Glu752Ter	p.E752*	ENST00000330258	NM_152424.3	752	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	283	272	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176132099	176132099	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	114	301	0	ENST00000367669.3:c.668A>C	p.Gln223Pro	p.Q223P	ENST00000367669	NM_022457.5	223	cAa/cCa																																																																															
MST1	4485	MSKCC	GRCh37	3	49722925	49722925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	41	252	0	ENST00000449682.2:c.1402C>T	p.Pro468Ser	p.P468S	ENST00000449682	NM_020998.3	468	Cca/Tca																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480412	89480412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	138	301	1	ENST00000336596.2:c.2249G>A	p.Arg750Gln	p.R750Q	ENST00000336596	NM_005233.5	750	cGg/cAg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120339	94120339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	380	388	1	ENST00000369303.4:c.712G>A	p.Ala238Thr	p.A238T	ENST00000369303	NM_004440.3	238	Gca/Aca																																																																															
NBN	4683	MSKCC	GRCh37	8	90955489	90955489	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	220	231	2	ENST00000265433.3:c.2176G>T	p.Glu726Ter	p.E726*	ENST00000265433	NM_002485.4	726	Gaa/Taa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486269	8486269	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	93	262	0	ENST00000356435.5:c.2548T>C	p.Phe850Leu	p.F850L	ENST00000356435		850	Ttt/Ctt																																																																															
PAX5	5079	MSKCC	GRCh37	9	36966598	36966598	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	245	423	0	ENST00000358127.4:c.728G>T	p.Arg243Met	p.R243M	ENST00000358127	NM_001280556.1	243	aGg/aTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877345	28877345	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	89	207	0	ENST00000282397.4:c.3976G>C	p.Asp1326His	p.D1326H	ENST00000282397	NM_002019.4	1326	Gac/Cac																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437727	110437727	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	136	364	0	ENST00000375856.3:c.674C>A	p.Thr225Asn	p.T225N	ENST00000375856	NM_003749.2	225	aCc/aAc																																																																															
GNA11	2767	MSKCC	GRCh37	19	3113332	3113332	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	234	510	0	ENST00000078429.4:c.326A>G	p.Asn109Ser	p.N109S	ENST00000078429	NM_002067.2	109	aAt/aGt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207091	1207091	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	271	496	0	ENST00000326873.7:c.179del	p.Tyr60SerfsTer4	p.Y60Sfs*4	ENST00000326873	NM_000455.4	60	tAc/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	241	317	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	28	225	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0004928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	16	204	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PARK2	5071	MSKCC	GRCh37	6	161807896	161807896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	100	391	0	ENST00000366898.1:c.1097G>A	p.Arg366Gln	p.R366Q	ENST00000366898	NM_004562.2	366	cGg/cAg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925334	114925334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	528	587	3	ENST00000543371.1:c.1412G>A	p.Arg471His	p.R471H	ENST00000543371	NM_001198531.1	471	cGc/cAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3790422	3790422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	261	390	1	ENST00000262367.5:c.4111G>T	p.Val1371Phe	p.V1371F	ENST00000262367	NM_004380.2	1371	Gtc/Ttc																																																																															
APC	324	MSKCC	GRCh37	5	112175481	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	271	289	0	ENST00000257430.4:c.4190del	p.Glu1397GlyfsTer18	p.E1397Gfs*18	ENST00000257430	NM_000038.5	1397	gAg/gg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099888	27099889	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	107	348	0	ENST00000324856.7:c.3770dup	p.Asp1258Ter	p.D1258*	ENST00000324856	NM_006015.4	1256	atg/atGg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	155	485	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920358	134920358	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	188	524	1	ENST00000398015.3:c.2173C>A	p.Leu725Ile	p.L725I	ENST00000398015	NM_004441.4	725	Ctc/Atc																																																																															
MLL	4297	MSKCC	GRCh37	11	118376853	118376853	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	129	412	2	ENST00000534358.1:c.10246C>T	p.Gln3416Ter	p.Q3416*	ENST00000534358	NM_005933.3	3416	Cag/Tag																																																																															
CDH1	999	MSKCC	GRCh37	16	68856122	68856122	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	150	429	0	ENST00000261769.5:c.1930del	p.Asp644ThrfsTer9	p.D644Tfs*9	ENST00000261769	NM_004360.3	644	Gac/ac																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066710	94066710	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004949-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			939	67	389	0	ENST00000369303.4:c.1049A>G	p.Glu350Gly	p.E350G	ENST00000369303	NM_004440.3	350	gAa/gGa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15365022	15365022	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004949-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			523	153	257	0	ENST00000263377.2:c.2099C>A	p.Ser700Tyr	p.S700Y	ENST00000263377	NM_058243.2	700	tCc/tAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115955	8115956	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004949-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			433	129	123	0	ENST00000346208.3:c.1305dupC	p.Ser436LeufsTer71	p.S436Lfs*71	ENST00000346208		434	cac/caCc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0004951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	14	214	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0004951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	16	62	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68853184	68853185	+	stop_gained,frameshift_variant,splice_region_variant	Nonsense_Mutation	INS	-	-	A			P-0004951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	64	137	0	ENST00000261769.5:c.1568dupA	p.Tyr523Ter	p.Y523*	ENST00000261769	NM_004360.3	523	tat/tAat																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0004961-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	41	664	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	42	392	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0004988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	8	261	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220371	1220371	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0004988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	50	395	0	ENST00000326873.7:c.465-1G>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
HGF	3082	MSKCC	GRCh37	7	81374438	81374438	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0004988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	26	373	0	ENST00000222390.5:c.626-2A>T		p.X209_splice	ENST00000222390	NM_000601.4	209																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134851646	134851646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	97	448	0	ENST00000398015.3:c.1052G>A	p.Arg351Gln	p.R351Q	ENST00000398015	NM_004441.4	351	cGg/cAg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356240	66356240	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	32	350	0	ENST00000273854.3:c.1257C>G	p.Ser419Arg	p.S419R	ENST00000273854	NM_004439.5	419	agC/agG																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877471	28877471	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	31	281	0	ENST00000282397.4:c.3850C>A	p.Leu1284Met	p.L1284M	ENST00000282397	NM_002019.4	1284	Ctg/Atg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226547	2226547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	46	424	0	ENST00000398665.3:c.4027G>A	p.Glu1343Lys	p.E1343K	ENST00000398665	NM_032482.2	1343	Gag/Aag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039636	47039636	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	59	500	0	ENST00000329236.7:c.854T>C	p.Leu285Pro	p.L285P	ENST00000329236	NM_001204466.1	285	cTg/cCg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508499	106508499	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752602335		P-0005002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	50	80	0	ENST00000359195.3:c.493G>A	p.Val165Ile	p.V165I	ENST00000359195	NM_002649.2	165	Gtc/Atc																																																																															
NF1	4763	MSKCC	GRCh37	17	29560231	29560231	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0005002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	73	145	0	ENST00000358273.4:c.3708G>A	p.Trp1236Ter	p.W1236*	ENST00000358273	NM_001042492.2	1236	tgG/tgA																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435856	149435856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	192	286	0	ENST00000286301.3:c.2368C>T	p.His790Tyr	p.H790Y	ENST00000286301	NM_005211.3	790	Cat/Tat																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509334	106509334	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	94	285	0	ENST00000359195.3:c.1328G>C	p.Ser443Thr	p.S443T	ENST00000359195	NM_002649.2	443	aGc/aCc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575365	64575365	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	112	211	0	ENST00000337652.1:c.667C>T	p.Arg223Trp	p.R223W	ENST00000337652	NM_130803.2	223	Cgg/Tgg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2224275	2224275	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	363	340	0	ENST00000326181.6:c.1287C>G	p.Tyr429Ter	p.Y429*	ENST00000326181	NM_032271.2	429	taC/taG																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246741	41246741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	250	298	0	ENST00000357654.3:c.807G>T	p.Leu269Phe	p.L269F	ENST00000357654	NM_007294.3	269	ttG/ttT																																																																															
STK11	6794	MSKCC	GRCh37	19	1220394	1220394	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	214	291	0	ENST00000326873.7:c.487G>C	p.Gly163Arg	p.G163R	ENST00000326873	NM_000455.4	163	Ggc/Cgc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610363	10610363	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	275	275	1	ENST00000171111.5:c.347G>C	p.Arg116Pro	p.R116P	ENST00000171111	NM_203500.1	116	cGg/cCg																																																																															
SRC	6714	MSKCC	GRCh37	20	36031269	36031269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	112	216	0	ENST00000358208.4:c.1388G>A	p.Arg463Gln	p.R463Q	ENST00000358208		463	cGg/cAg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57478835	57478835	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	96	175	0	ENST00000371085.3:c.421G>C	p.Asp141His	p.D141H	ENST00000371085	NM_000516.4	141	Gac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579330	7579331	+	missense_variant	Missense_Mutation	DNP	GG	GG	AC			P-0005002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	234	227	0	ENST00000269305.4:c.356_357delinsGT	p.Ala119Gly	p.A119G	ENST00000269305	NM_001126112.2	119	gCC/gGT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	10	307	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579342	7579515	+	inframe_deletion	In_Frame_Del	DEL	ATGCAAGAAGCCCAGACGGAAACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGGACAGAAGATGACAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTGCAGGGGCCACGGGGGGAGCAGCCTCTGGCATTCTGGGAGCTTCATCTGGACCTGG	ATGCAAGAAGCCCAGACGGAAACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGGACAGAAGATGACAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTGCAGGGGCCACGGGGGGAGCAGCCTCTGGCATTCTGGGAGCTTCATCTGGACCTGG	-			P-0005009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	90	333	0	ENST00000269305.4:c.172_345del	p.Pro58_His115del	p.P58_H115del	ENST00000269305	NM_001126112.2	58	CCAGGTCCAGATGAAGCTCCCAGAATGCCAGAGGCTGCTCCCCCCGTGGCCCCTGCACCAGCAGCTCCTACACCGGCGGCCCCTGCACCAGCCCCCTCCTGGCCCCTGTCATCTTCTGTCCCTTCCCAGAAAACCTACCAGGGCAGCTACGGTTTCCGTCTGGGCTTCTTGCAT/-																																																																															
ATRX	546	MSKCC	GRCh37	X	76907621	76907621	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	64	333	0	ENST00000373344.5:c.4540C>T	p.Arg1514Ter	p.R1514*	ENST00000373344	NM_000489.3	1514	Cga/Tga																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944259	81944259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	82	356	1	ENST00000359376.3:c.1868G>A	p.Arg623His	p.R623H	ENST00000359376	NM_002661.3	623	cGc/cAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68863588	68863603	+	frameshift_variant	Frame_Shift_Del	DEL	TGGACGCTCGGCCTGA	TGGACGCTCGGCCTGA	-			P-0005015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	79	262	0	ENST00000261769.5:c.2327_2342del	p.Leu776GlnfsTer2	p.L776Qfs*2	ENST00000261769	NM_004360.3	776	cTGGACGCTCGGCCTGAa/ca																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0005025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	152	378	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0005025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	330	537	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247367	153247367	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	85	288	1	ENST00000281708.4:c.1435C>T	p.Arg479Ter	p.R479*	ENST00000281708	NM_033632.3	479	Cga/Tga																																																																															
TP63	8626	MSKCC	GRCh37	3	189582168	189582168	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121908835		P-0005025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	151	495	0	ENST00000264731.3:c.727C>T	p.Arg243Trp	p.R243W	ENST00000264731	NM_003722.4	243	Cgg/Tgg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549149	21549149	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1524	90	623	2	ENST00000382592.4:c.3127C>T	p.Arg1043Ter	p.R1043*	ENST00000382592	NM_014572.2	1043	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250856	153250858	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0005025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	132	544	0	ENST00000281708.4:c.1202_1204delACA	p.Asn401del	p.N401del	ENST00000281708	NM_033632.3	401	aACAct/act																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0005029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	595	786	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175240	112175240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	416	553	1	ENST00000257430.4:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000257430	NM_000038.5	1317	Gaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0005029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	434	565	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	123	421	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0005035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	54	353	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023988	27023988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	52	194	0	ENST00000324856.7:c.1094G>A	p.Gly365Glu	p.G365E	ENST00000324856	NM_006015.4	365	gGg/gAg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736334	243736334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	113	627	0	ENST00000263826.5:c.713C>T	p.Ser238Leu	p.S238L	ENST00000263826	NM_005465.4	238	tCg/tTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637727	176637727	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	82	541	0	ENST00000439151.2:c.2327C>G	p.Ala776Gly	p.A776G	ENST00000439151	NM_022455.4	776	gCt/gGt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5029783	5029783	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0005035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	89	409	0	ENST00000381652.3:c.227G>C	p.Gly76Ala	p.G76A	ENST00000381652	NM_004972.3	76	gGt/gCt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584708	48584708	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0005035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	126	539	0	ENST00000342988.3:c.788-2A>T		p.X263_splice	ENST00000342988	NM_005359.5	263																																																																																
DICER1	23405	MSKCC	GRCh37	14	95570009	95570009	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005045-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	132	658	0	ENST00000343455.3:c.3724T>C	p.Tyr1242His	p.Y1242H	ENST00000343455	NM_177438.2	1242	Tac/Cac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	26	240	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0005048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	97	554	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671739	30671739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1245	191	636	1	ENST00000376406.3:c.5221C>T	p.Pro1741Ser	p.P1741S	ENST00000376406	NM_014641.2	1741	Cct/Tct																																																																															
MGA	23269	MSKCC	GRCh37	15	42005558	42005558	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	67	862	0	ENST00000219905.7:c.3297del	p.Gln1100ArgfsTer33	p.Q1100Rfs*33	ENST00000219905	NM_001164273.1	1098	caT/ca																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031919	26031919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	56	505	0	ENST00000244661.2:c.370G>A	p.Asp124Asn	p.D124N	ENST00000244661	NM_003537.3	124	Gac/Aac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845934	72845934	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	46	476	0	ENST00000268489.5:c.3533C>A	p.Ser1178Ter	p.S1178*	ENST00000268489	NM_006885.3	1178	tCg/tAg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78857255	78857255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	15	321	1	ENST00000306801.3:c.1621G>A	p.Val541Met	p.V541M	ENST00000306801	NM_020761.2	541	Gtg/Atg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922763	44922763	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	32	218	0	ENST00000377967.4:c.1624C>T	p.Gln542Ter	p.Q542*	ENST00000377967	NM_021140.2	542	Cag/Tag																																																																															
MLL	4297	MSKCC	GRCh37	11	118359429	118359431	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0005078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	30	373	0	ENST00000534358.1:c.4434_4436del	p.Cys1479del	p.C1479del	ENST00000534358	NM_005933.3	1478	cGTTgc/cgc																																																																															
RYBP	23429	MSKCC	GRCh37	3	72428569	72428569	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	24	205	0	ENST00000477973.2:c.433del	p.Ile146SerfsTer62	p.I146Sfs*62	ENST00000477973	NM_012234.5	145	cgG/cg																																																																															
APC	324	MSKCC	GRCh37	5	112173502	112173502	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	274	509	0	ENST00000257430.4:c.2211C>A	p.Tyr737Ter	p.Y737*	ENST00000257430	NM_000038.5	737	taC/taA																																																																															
PARK2	5071	MSKCC	GRCh37	6	162475154	162475154	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	402	702	0	ENST00000366898.1:c.587G>C	p.Cys196Ser	p.C196S	ENST00000366898	NM_004562.2	196	tGc/tCc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89352567	89352599	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCCGTACCGCAGCAGCAGCTTCACCACCTACA	CTCCGTACCGCAGCAGCAGCTTCACCACCTACA	-			P-0005091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1112	76	553	0	ENST00000301030.4:c.745-5_772del		p.X249_splice	ENST00000301030	NM_001256183.1	249																																																																																
TP53	7157	MSKCC	GRCh37	17	7578467	7578468	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCGGGC			P-0005091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	609	515	2	ENST00000269305.4:c.456_462dup	p.Thr155AlafsTer28	p.T155Afs*28	ENST00000269305	NM_001126112.2	154	-/GCCCGGC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910664	32910666	+	missense_variant	Missense_Mutation	ONP	AAA	AAA	TAT			P-0005091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2955	421	905	3	ENST00000380152.3:c.2172_2174delinsTAT	p.Lys724_Lys725delinsAsnIle	p.K724_K725delinsNI	ENST00000380152		724	aaAAAa/aaTATa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	93	417	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0005172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	96	444	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0005172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	71	354	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198281581	198281581	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139823279		P-0005172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	73	464	0	ENST00000335508.6:c.550G>A	p.Val184Ile	p.V184I	ENST00000335508	NM_012433.2	184	Gtc/Atc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120860	115120860	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	61	470	0	ENST00000257566.3:c.146A>G	p.Asn49Ser	p.N49S	ENST00000257566	NM_016569.3	49	aAc/aGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	99	291	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0005207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	105	205	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0005207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	157	405	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0005207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	115	301	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
DIS3	22894	MSKCC	GRCh37	13	73354982	73354982	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0005207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	57	159	0	ENST00000377767.4:c.386+2T>G		p.X129_splice	ENST00000377767	NM_014953.3	129																																																																																
E2F3	1871	MSKCC	GRCh37	6	20402825	20402839	+	inframe_deletion	In_Frame_Del	DEL	GCGGCGGCAGCGGCG	GCGGCGGCAGCGGCG	-			P-0005207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	13	15	0	ENST00000346618.3:c.370_384del	p.Ser124_Gly128del	p.S124_G128del	ENST00000346618	NM_001949.4	121	cGCGGCGGCAGCGGCGgc/cgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	266	456	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0005210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	248	699	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	73	431	1	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
MLL2	8085	MSKCC	GRCh37	12	49428627	49428627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	48	648	0	ENST00000301067.7:c.10323G>T	p.Gln3441His	p.Q3441H	ENST00000301067	NM_003482.3	3441	caG/caT																																																																															
APC	324	MSKCC	GRCh37	5	112173830	112173831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	125	470	0	ENST00000257430.4:c.2544dupA	p.Asp849ArgfsTer2	p.D849Rfs*2	ENST00000257430	NM_000038.5	847	gaa/gAaa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	160	441	2	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																															
AKT3	10000	MSKCC	GRCh37	1	243800935	243800935	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	81	503	0	ENST00000263826.5:c.539A>T	p.Lys180Met	p.K180M	ENST00000263826	NM_005465.4	180	aAg/aTg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99172265	99172265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	22	347	0	ENST00000074304.5:c.1831A>G	p.Thr611Ala	p.T611A	ENST00000074304	NM_001134224.1	611	Acc/Gcc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259459	89259459	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	128	664	2	ENST00000336596.2:c.603G>T	p.Lys201Asn	p.K201N	ENST00000336596	NM_005233.5	201	aaG/aaT																																																																															
AXIN1	8312	MSKCC	GRCh37	16	338153	338153	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	37	636	0	ENST00000262320.3:c.2558A>T	p.Lys853Met	p.K853M	ENST00000262320	NM_003502.3	853	aAg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0005213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	49	769	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	52	653	2	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39609314	39609314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	41	552	2	ENST00000262039.4:c.1616G>A	p.Arg539His	p.R539H	ENST00000262039	NM_002647.2	539	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	25	610	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	85	728	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	11	187	0	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	43	653	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	29	541	0	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg																																																																															
MITF	4286	MSKCC	GRCh37	3	69928347	69928347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	33	572	1	ENST00000352241.4:c.167G>A	p.Arg56His	p.R56H	ENST00000352241	NM_198159.2	56	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	13	619	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KDR	3791	MSKCC	GRCh37	4	55955112	55955112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	26	567	0	ENST00000263923.4:c.3433G>A	p.Gly1145Arg	p.G1145R	ENST00000263923	NM_002253.2	1145	Ggg/Agg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442569	52442569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	25	446	0	ENST00000460680.1:c.176G>A	p.Arg59Gln	p.R59Q	ENST00000460680	NM_004656.3	59	cGg/cAg																																																																															
SYK	6850	MSKCC	GRCh37	9	93606304	93606304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	58	617	0	ENST00000375746.1:c.124C>T	p.Arg42Cys	p.R42C	ENST00000375746	NM_001174167.1	42	Cgc/Tgc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9777676	9777676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	42	562	0	ENST00000377346.4:c.1012C>T	p.Arg338Trp	p.R338W	ENST00000377346	NM_005026.3	338	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257509	16257509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	35	612	1	ENST00000375759.3:c.4774C>T	p.Arg1592Trp	p.R1592W	ENST00000375759	NM_015001.2	1592	Cgg/Tgg																																																																															
ALK	238	MSKCC	GRCh37	2	29474086	29474086	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	31	497	0	ENST00000389048.3:c.2089A>G	p.Thr697Ala	p.T697A	ENST00000389048	NM_004304.4	697	Acc/Gcc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48023095	48023095	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	53	902	0	ENST00000234420.5:c.520A>T	p.Arg174Ter	p.R174*	ENST00000234420	NM_000179.2	174	Aga/Tga																																																																															
CASP8	841	MSKCC	GRCh37	2	202131412	202131412	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1339962485		P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	36	615	0	ENST00000358485.4:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000358485	NM_001080125.1	127	cGa/cAa																																																																															
CASP8	841	MSKCC	GRCh37	2	202151303	202151303	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	36	673	0	ENST00000358485.4:c.1603T>G	p.Phe535Val	p.F535V	ENST00000358485	NM_001080125.1	535	Ttc/Gtc																																																																															
KDR	3791	MSKCC	GRCh37	4	55976872	55976872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	27	570	2	ENST00000263923.4:c.1040G>A	p.Arg347His	p.R347H	ENST00000263923	NM_002253.2	347	cGt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187522536	187522536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	31	613	0	ENST00000441802.2:c.11527C>T	p.Arg3843Cys	p.R3843C	ENST00000441802	NM_005245.3	3843	Cgt/Tgt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540379	187540379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	25	432	0	ENST00000441802.2:c.7361G>A	p.Arg2454Gln	p.R2454Q	ENST00000441802	NM_005245.3	2454	cGg/cAg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950532	38950532	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	27	634	0	ENST00000357387.3:c.3418G>T	p.Asp1140Tyr	p.D1140Y	ENST00000357387	NM_152756.3	1140	Gat/Tat																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38962423	38962423	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	28	417	0	ENST00000357387.3:c.1709T>C	p.Leu570Ser	p.L570S	ENST00000357387	NM_152756.3	570	tTa/tCa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518038	176518038	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111435837		P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	43	768	1	ENST00000292408.4:c.536C>T	p.Thr179Met	p.T179M	ENST00000292408	NM_213647.1	179	aCg/aTg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046703	180046703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	45	580	2	ENST00000261937.6:c.2609G>A	p.Gly870Asp	p.G870D	ENST00000261937	NM_182925.4	870	gGc/gAc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911072	29911072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	43	670	1	ENST00000376809.5:c.371G>A	p.Gly124Asp	p.G124D	ENST00000376809	NM_002116.7	124	gGc/gAc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200266	138200266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	25	426	0	ENST00000237289.4:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000237289	NM_001270507.1	562	Cgt/Tgt																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997756	149997756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	29	578	0	ENST00000253339.5:c.2711G>A	p.Arg904Gln	p.R904Q	ENST00000253339		904	cGa/cAa																																																																															
CDK6	1021	MSKCC	GRCh37	7	92247520	92247520	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	26	507	1	ENST00000265734.4:c.700G>A	p.Val234Met	p.V234M	ENST00000265734	NM_001259.6	234	Gtg/Atg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970981	21970981	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	45	417	0	ENST00000304494.5:c.377T>C	p.Val126Ala	p.V126A	ENST00000304494	NM_000077.4	126	gTc/gCc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781193	135781193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	58	867	2	ENST00000298552.3:c.1772C>T	p.Pro591Leu	p.P591L	ENST00000298552	NM_001162426.1	591	cCg/cTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417332	139417332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	40	300	2	ENST00000277541.6:c.712G>A	p.Asp238Asn	p.D238N	ENST00000277541	NM_017617.3	238	Gac/Aac																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106072	8106072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	22	470	0	ENST00000346208.3:c.892C>T	p.Arg298Trp	p.R298W	ENST00000346208		298	Cgg/Tgg																																																																															
RET	5979	MSKCC	GRCh37	10	43607597	43607597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	64	657	1	ENST00000355710.3:c.1573C>T	p.Arg525Trp	p.R525W	ENST00000355710	NM_020975.4	525	Cgg/Tgg																																																																															
TET1	80312	MSKCC	GRCh37	10	70405658	70405658	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	34	649	0	ENST00000373644.4:c.3172T>A	p.Leu1058Met	p.L1058M	ENST00000373644	NM_030625.2	1058	Ttg/Atg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69631132	69631132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	53	808	2	ENST00000334134.2:c.280G>A	p.Gly94Arg	p.G94R	ENST00000334134	NM_005247.2	94	Ggg/Agg																																																																															
MLL	4297	MSKCC	GRCh37	11	118374462	118374462	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	43	559	0	ENST00000534358.1:c.7855T>C	p.Tyr2619His	p.Y2619H	ENST00000534358	NM_005933.3	2619	Tat/Cat																																																																															
RAD52	5893	MSKCC	GRCh37	12	1025614	1025614	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200657132		P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	57	537	1	ENST00000358495.3:c.761C>T	p.Thr254Met	p.T254M	ENST00000358495	NM_134424.2	254	aCg/aTg																																																																															
MLL2	8085	MSKCC	GRCh37	12	49443617	49443617	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	39	650	0	ENST00000301067.7:c.3754C>T	p.Arg1252Ter	p.R1252*	ENST00000301067	NM_003482.3	1252	Cga/Tga																																																																															
POLE	5426	MSKCC	GRCh37	12	133202855	133202855	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	27	622	0	ENST00000320574.5:c.6379C>T	p.Arg2127Ter	p.R2127*	ENST00000320574	NM_006231.2	2127	Cga/Tga																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562285	21562285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	37	486	0	ENST00000382592.4:c.1634G>A	p.Arg545His	p.R545H	ENST00000382592	NM_014572.2	545	cGt/cAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954261	32954261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	78	685	0	ENST00000380152.3:c.9235G>A	p.Val3079Ile	p.V3079I	ENST00000380152		3079	Gtt/Att																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436239	110436239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	34	217	0	ENST00000375856.3:c.2162C>T	p.Pro721Leu	p.P721L	ENST00000375856	NM_003749.2	721	cCg/cTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95579443	95579443	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	40	591	0	ENST00000343455.3:c.2026C>T	p.Arg676Ter	p.R676*	ENST00000343455	NM_177438.2	676	Cga/Tga																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473648	67473648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	32	594	0	ENST00000327367.4:c.728G>A	p.Arg243His	p.R243H	ENST00000327367	NM_005902.3	243	cGc/cAc																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251018	99251018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	37	560	1	ENST00000268035.6:c.322G>A	p.Gly108Ser	p.G108S	ENST00000268035	NM_000875.3	108	Ggc/Agc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347213	347213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	51	442	2	ENST00000262320.3:c.1798G>A	p.Val600Met	p.V600M	ENST00000262320	NM_003502.3	600	Gtg/Atg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786718	3786718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	39	785	0	ENST00000262367.5:c.4493G>A	p.Arg1498Gln	p.R1498Q	ENST00000262367	NM_004380.2	1498	cGa/cAa																																																																															
CDH1	999	MSKCC	GRCh37	16	68862107	68862107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	39	657	0	ENST00000261769.5:c.2195G>A	p.Arg732Gln	p.R732Q	ENST00000261769	NM_004360.3	732	cGg/cAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832330	72832330	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	43	876	0	ENST00000268489.5:c.4251G>C	p.Gln1417His	p.Q1417H	ENST00000268489	NM_006885.3	1417	caG/caC																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992964	72992964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	44	877	1	ENST00000268489.5:c.1081G>A	p.Gly361Arg	p.G361R	ENST00000268489	NM_006885.3	361	Gga/Aga																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11924303	11924303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	16	89	0	ENST00000353533.5:c.100G>A	p.Val34Ile	p.V34I	ENST00000353533	NM_003010.3	34	Gtc/Atc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016670	12016670	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	28	532	0	ENST00000353533.5:c.806A>G	p.Tyr269Cys	p.Y269C	ENST00000353533	NM_003010.3	269	tAc/tGc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	33	609	0	ENST00000269571.5:c.2329G>A	p.Val777Met	p.V777M	ENST00000269571		777	Gtg/Atg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453322	40453322	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	40	1070	1	ENST00000345506.4:c.1019A>G	p.Gln340Arg	p.Q340R	ENST00000345506	NM_003152.3	340	cAg/cGg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41234435	41234435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	31	670	0	ENST00000357654.3:c.4343G>A	p.Ser1448Asn	p.S1448N	ENST00000357654	NM_007294.3	1448	aGc/aAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117932	70117932	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	60	399	0	ENST00000245479.2:c.400G>T	p.Glu134Ter	p.E134*	ENST00000245479	NM_000346.3	134	Gag/Tag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226926	2226926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	21	186	0	ENST00000398665.3:c.4406C>T	p.Pro1469Leu	p.P1469L	ENST00000398665	NM_032482.2	1469	cCg/cTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229645	5229645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	11	47	0	ENST00000357368.4:c.2206G>A	p.Ala736Thr	p.A736T	ENST00000357368	NM_002850.3	736	Gcc/Acc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597450	10597450	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200652594		P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	45	667	0	ENST00000171111.5:c.1753G>A	p.Asp585Asn	p.D585N	ENST00000171111	NM_203500.1	585	Gac/Aac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138624	11138624	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	30	508	0	ENST00000344626.4:c.3380A>G	p.Asp1127Gly	p.D1127G	ENST00000344626	NM_003072.3	1127	gAt/gGt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906367	50906367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	45	682	4	ENST00000440232.2:c.1028G>A	p.Arg343His	p.R343H	ENST00000440232	NM_002691.3	343	cGc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385183	41385183	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1423243089		P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	32	665	0	ENST00000373198.4:c.778C>T	p.Arg260Trp	p.R260W	ENST00000373198	NM_133170.3	260	Cgg/Tgg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24145549	24145549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	31	677	0	ENST00000263121.7:c.568C>T	p.Arg190Trp	p.R190W	ENST00000263121	NM_003073.3	190	Cgg/Tgg																																																																															
MED12	9968	MSKCC	GRCh37	X	70351421	70351421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	30	348	0	ENST00000374080.3:c.4069C>T	p.Arg1357Cys	p.R1357C	ENST00000374080		1357	Cgc/Tgc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197819	123197819	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	42	414	0	ENST00000218089.9:c.1943A>T	p.Asn648Ile	p.N648I	ENST00000218089	NM_001042749.1	648	aAc/aTc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027304	48027304	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	39	608	0	ENST00000234420.5:c.2184del	p.Ala729ProfsTer7	p.A729Pfs*7	ENST00000234420	NM_000179.2	728	Aaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0005247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	93	578	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175324	112175324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	100	474	0	ENST00000257430.4:c.4033G>T	p.Glu1345Ter	p.E1345*	ENST00000257430	NM_000038.5	1345	Gaa/Taa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459758	149459758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	150	605	1	ENST00000286301.3:c.449G>A	p.Arg150His	p.R150H	ENST00000286301	NM_005211.3	150	cGc/cAc																																																																															
RB1	5925	MSKCC	GRCh37	13	48919323	48919323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	137	400	0	ENST00000267163.4:c.488G>A	p.Ser163Asn	p.S163N	ENST00000267163	NM_000321.2	163	aGc/aAc																																																																															
APC	324	MSKCC	GRCh37	5	112174352	112174353	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0005247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	28	484	1	ENST00000257430.4:c.3061_3062del	p.Leu1021ArgfsTer7	p.L1021Rfs*7	ENST00000257430	NM_000038.5	1021	CTa/a																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121909224		P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	33	359	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																															
NF1	4763	MSKCC	GRCh37	17	29527502	29527503	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	45	485	0	ENST00000358273.4:c.952_953delGA	p.Glu318LysfsTer11	p.E318Kfs*11	ENST00000358273	NM_001042492.2	317	acAGaa/acaa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781597	9781597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	82	482	2	ENST00000377346.4:c.1907G>A	p.Arg636Gln	p.R636Q	ENST00000377346	NM_005026.3	636	cGg/cAg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426806	212426806	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	17	373	0	ENST00000342788.4:c.2309T>A	p.Leu770Gln	p.L770Q	ENST00000342788	NM_005235.2	770	cTg/cAg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967228	93967228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	21	530	0	ENST00000369303.4:c.2124G>A	p.Met708Ile	p.M708I	ENST00000369303	NM_004440.3	708	atG/atA																																																																															
STAT3	6774	MSKCC	GRCh37	17	40481471	40481471	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	46	653	0	ENST00000264657.5:c.1238T>C	p.Leu413Pro	p.L413P	ENST00000264657	NM_139276.2	413	cTg/cCg																																																																															
AXL	558	MSKCC	GRCh37	19	41758858	41758858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	50	481	0	ENST00000301178.4:c.1912G>A	p.Gly638Arg	p.G638R	ENST00000301178	NM_021913.4	638	Ggg/Agg																																																																															
NF2	4771	MSKCC	GRCh37	22	30051610	30051610	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	17	625	0	ENST00000338641.4:c.544G>C	p.Glu182Gln	p.E182Q	ENST00000338641	NM_000268.3	182	Gaa/Caa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53240838	53240838	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	41	484	1	ENST00000375401.3:c.1243-1G>T		p.X415_splice	ENST00000375401	NM_004187.3	415																																																																																
NF1	4763	MSKCC	GRCh37	17	29490289	29490292	+	frameshift_variant	Frame_Shift_Del	DEL	GTGA	GTGA	-			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	47	557	1	ENST00000358273.4:c.374_377del	p.Arg125GlnfsTer39	p.R125Qfs*39	ENST00000358273	NM_001042492.2	125	cGTGAa/ca																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872935	35872951	+	frameshift_variant	Frame_Shift_Del	DEL	TCCCTTCACCTGGCGGA	TCCCTTCACCTGGCGGA	-			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	65	658	0	ENST00000216797.5:c.281_297del	p.Ile94ArgfsTer29	p.I94Rfs*29	ENST00000216797	NM_020529.2	94	aTCCGCCAGGTGAAGGGA/a																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829109	72829110	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	25	441	1	ENST00000268489.5:c.7471_7472del	p.Gln2491ValfsTer42	p.Q2491Vfs*42	ENST00000268489	NM_006885.3	2491	CAg/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7578505	7578510	+	inframe_deletion	In_Frame_Del	DEL	GGGCAG	GGGCAG	-			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	92	416	0	ENST00000269305.4:c.420_425del	p.Cys141_Pro142del	p.C141_P142del	ENST00000269305	NM_001126112.2	140	acCTGCCCt/act																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591104	67591115	+	inframe_deletion	In_Frame_Del	DEL	TTAAACCAGACC	TTAAACCAGACC	-			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	21	417	0	ENST00000274335.5:c.1700_1711del	p.Lys567_Leu570del	p.K567_L570del	ENST00000274335		566	aTTAAACCAGACCtt/att																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252994	36252995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	37	413	0	ENST00000300305.3:c.367dupG	p.Asp123GlyfsTer15	p.D123Gfs*15	ENST00000300305		123	gat/gGat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	314	399	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	317	500	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154890	2154890	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1248	244	560	0	ENST00000434045.2:c.331C>A	p.Pro111Thr	p.P111T	ENST00000434045	NM_001127598.1	111	Ccc/Acc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911235	32911235	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1859	217	951	0	ENST00000380152.3:c.2743A>C	p.Thr915Pro	p.T915P	ENST00000380152		915	Act/Cct																																																																															
MALT1	10892	MSKCC	GRCh37	18	56400717	56400717	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1074	520	910	1	ENST00000348428.3:c.1311A>T	p.Glu437Asp	p.E437D	ENST00000348428	NM_006785.3	437	gaA/gaT																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265897	41266218	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCA	GTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCA	-			P-0005327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			26	122	50	0	ENST00000349496.5:c.14-117_218del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0005337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	194	352	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0005337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	308	397	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65312335	65312335	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	165	326	0	ENST00000342505.4:c.1984G>C	p.Glu662Gln	p.E662Q	ENST00000342505	NM_002227.2	662	Gag/Cag																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39593419	39593419	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	107	217	0	ENST00000262039.4:c.1184A>G	p.Tyr395Cys	p.Y395C	ENST00000262039	NM_002647.2	395	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578467	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCGGACGCGGGT	GCGCGGACGCGGGT	-			P-0005337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	127	275	0	ENST00000269305.4:c.463_476del	p.Thr155HisfsTer21	p.T155Hfs*21	ENST00000269305	NM_001126112.2	155	ACCCGCGTCCGCGCc/c																																																																															
RB1	5925	MSKCC	GRCh37	13	48878076	48878077	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	38	76	1	ENST00000267163.4:c.30dup	p.Ala11ArgfsTer20	p.A11Rfs*20	ENST00000267163	NM_000321.2	10	gcc/gCcc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044753	47044754	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	302	139	0	ENST00000329236.7:c.1920dup	p.Asp641Ter	p.D641*	ENST00000329236	NM_001204466.1	640	agt/agTt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740620	145740620	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1230	423	362	0	ENST00000428558.2:c.1397C>G	p.Pro466Arg	p.P466R	ENST00000428558	NM_004260.3	466	cCg/cGg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4097290	4097290	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	260	382	0	ENST00000262948.5:c.971A>G	p.Tyr324Cys	p.Y324C	ENST00000262948	NM_030662.3	324	tAt/tGt																																																																															
AR	367	MSKCC	GRCh37	X	66937371	66937371	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	187	229	0	ENST00000374690.3:c.2225G>T	p.Trp742Leu	p.W742L	ENST00000374690	NM_000044.3	742	tGg/tTg																																																																															
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1309	1193	235	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37665992	37665992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2683	698	340	0	ENST00000447079.4:c.2644C>T	p.Arg882Trp	p.R882W	ENST00000447079	NM_015083.1	882	Cgg/Tgg																																																																															
IRF4	3662	MSKCC	GRCh37	6	401520	401520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1460	263	322	0	ENST00000380956.4:c.842C>T	p.Thr281Met	p.T281M	ENST00000380956	NM_001195286.1	281	aCg/aTg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67650653	67650653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2051	255	360	0	ENST00000264010.4:c.958C>T	p.Arg320Cys	p.R320C	ENST00000264010	NM_006565.3	320	Cgt/Tgt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37646980	37646981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	2321	364	0	ENST00000447079.4:c.2103dup	p.Pro702ThrfsTer27	p.P702Tfs*27	ENST00000447079	NM_015083.1	701	aga/agAa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347204	347204	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	114	336	0	ENST00000262320.3:c.1807A>C	p.Lys603Gln	p.K603Q	ENST00000262320	NM_003502.3	603	Aaa/Caa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25457227	25457227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	185	336	0	ENST00000264709.3:c.2660G>A	p.Arg887Lys	p.R887K	ENST00000264709	NM_175629.2	887	aGa/aAa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212652562	212652770	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATGATTTCCAAAAGAGAATTAGCTAGAAGTAAAAGGTTGATCAGCCATTTGTTCTGCCATATATAACTGAACATTTCAATGAATGCAATCAAAGTTCAAAATATTAGTAATGACATAATAAGCATAACTCATTCATCGCCACATAGGGTAGAACATTTTGAGAAATTAAAAAGAATAATTCTACTTACATCCTGAACTACCATTTGTTG	ATGATTTCCAAAAGAGAATTAGCTAGAAGTAAAAGGTTGATCAGCCATTTGTTCTGCCATATATAACTGAACATTTCAATGAATGCAATCAAAGTTCAAAATATTAGTAATGACATAATAAGCATAACTCATTCATCGCCACATAGGGTAGAACATTTTGAGAAATTAAAAAGAATAATTCTACTTACATCCTGAACTACCATTTGTTG	-			P-0005377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			15	143	8	0	ENST00000342788.4:c.536_556+188del		p.X179_splice	ENST00000342788	NM_005235.2	179																																																																																
GATA3	2625	MSKCC	GRCh37	10	8115875	8115880	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCTT	GCCCTT	C			P-0005377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	207	409	0	ENST00000346208.3:c.1221_1226delinsC	p.Pro408GlnfsTer97	p.P408Qfs*97	ENST00000346208		407	tcGCCCTTc/tcCc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0005380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	36	184	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220370	1220370	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0005380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	69	452	0	ENST00000326873.7:c.465-2A>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
PIK3CD	5293	MSKCC	GRCh37	1	9783241	9783241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	53	411	1	ENST00000377346.4:c.2485C>T	p.Leu829Phe	p.L829F	ENST00000377346	NM_005026.3	829	Ctc/Ttc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724526	162724526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	46	474	0	ENST00000367921.3:c.298G>T	p.Val100Leu	p.V100L	ENST00000367921	NM_006182.2	100	Gtg/Ttg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801234	1801234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	54	342	1	ENST00000260795.2:c.363C>A	p.Phe121Leu	p.F121L	ENST00000260795		121	ttC/ttA																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803660	1803660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	65	559	1	ENST00000260795.2:c.838G>A	p.Asp280Asn	p.D280N	ENST00000260795		280	Gac/Aac																																																																															
FANCC	2176	MSKCC	GRCh37	9	97897676	97897676	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	71	533	0	ENST00000289081.3:c.795G>C	p.Glu265Asp	p.E265D	ENST00000289081	NM_000136.2	265	gaG/gaC																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569715	95569715	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	40	355	0	ENST00000343455.3:c.4018G>C	p.Glu1340Gln	p.E1340Q	ENST00000343455	NM_177438.2	1340	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577157	7577157	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0005380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	53	507	0	ENST00000269305.4:c.783-2A>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602335	10602335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	56	408	1	ENST00000171111.5:c.1243C>T	p.Arg415Cys	p.R415C	ENST00000171111	NM_203500.1	415	Cgc/Tgc																																																																															
CIC	23152	MSKCC	GRCh37	19	42795021	42795021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	76	469	1	ENST00000575354.2:c.2101C>T	p.Pro701Ser	p.P701S	ENST00000575354	NM_015125.3	701	Cca/Tca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	94	301	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
MST1	4485	MSKCC	GRCh37	3	49722905	49722906	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GG			P-0005390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	25	126	1	ENST00000449682.2:c.1420_1421dup	p.Asp475GlnfsTer52	p.D475Qfs*52	ENST00000449682	NM_020998.3	474	cca/ccCCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	101	385	1	ENST00000269305.4:c.700T>A	p.Tyr234Asn	p.Y234N	ENST00000269305	NM_001126112.2	234	Tac/Aac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0005393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1162	436	489	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	329	537	0	ENST00000269305.4:c.596G>A	p.Gly199Glu	p.G199E	ENST00000269305	NM_001126112.2	199	gGa/gAa																																																																															
CD276	80381	MSKCC	GRCh37	15	73996231	73996231	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	67	186	0	ENST00000318443.5:c.965A>T	p.Asn322Ile	p.N322I	ENST00000318443	NM_001024736.1	322	aAt/aTt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678391	88678391	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	246	638	2	ENST00000360948.2:c.1145A>T	p.Asn382Ile	p.N382I	ENST00000360948	NM_001012338.2	382	aAc/aTc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868687	56868687	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1761	115	640	0	ENST00000308159.5:c.1779A>T	p.Arg593Ser	p.R593S	ENST00000308159	NM_014669.4	593	agA/agT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144018	11144018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	174	442	0	ENST00000344626.4:c.3599G>A	p.Arg1200His	p.R1200H	ENST00000344626	NM_003072.3	1200	cGt/cAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70339922	70339922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1398	185	622	0	ENST00000374080.3:c.455C>A	p.Pro152His	p.P152H	ENST00000374080		152	cCt/cAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70362067	70362067	+	stop_lost	Nonstop_Mutation	SNP	G	G	T			P-0005393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1109	349	589	0	ENST00000374080.3:c.6533G>T	p.Ter2178LeuextTer18	p.*2178Lext*18	ENST00000374080		2178	tGa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0005435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	134	501	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0005435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	99	529	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	288	592	6	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	70	158	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738411	145738416	+	inframe_deletion	In_Frame_Del	DEL	GGTGCA	GGTGCA	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	85	447	0	ENST00000428558.2:c.2569_2574delTGCACC	p.Cys857_Thr858del	p.C857_T858del	ENST00000428558	NM_004260.3	857	TGCACC/-																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	123	427	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	131	325	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1369	251	788	1	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287520	33287520	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141395832		P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	119	367	0	ENST00000374542.5:c.1577G>A	p.Arg526His	p.R526H	ENST00000374542	NM_001141970.1	526	cGc/cAc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423601	88423601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	111	556	0	ENST00000360948.2:c.2234G>A	p.Arg745Gln	p.R745Q	ENST00000360948	NM_001012338.2	745	cGg/cAg																																																																															
CCND1	595	MSKCC	GRCh37	11	69466021	69466021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	145	613	0	ENST00000227507.2:c.859C>T	p.Pro287Ser	p.P287S	ENST00000227507	NM_053056.2	287	Ccc/Tcc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088788	27088788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	129	576	0	ENST00000324856.7:c.2402del	p.Gly801ValfsTer32	p.G801Vfs*32	ENST00000324856	NM_006015.4	799	caG/ca																																																																															
HRAS	3265	MSKCC	GRCh37	11	533881	533881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs727503093		P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	163	527	1	ENST00000311189.7:c.175G>A	p.Ala59Thr	p.A59T	ENST00000311189		59	Gcc/Acc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	88	481	1	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1107	296	802	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	208	668	11	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
B2M	567	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	113	262	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157488293	157488293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750810656		P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	94	300	0	ENST00000346085.5:c.2999C>T	p.Ala1000Val	p.A1000V	ENST00000346085	NM_020732.3	1000	gCg/gTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217783	2217783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	142	535	0	ENST00000398665.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000398665	NM_032482.2	853	Cgc/Tgc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400902	72400902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1110	218	814	1	ENST00000357731.5:c.269G>A	p.Arg90Gln	p.R90Q	ENST00000357731	NM_173808.2	90	cGa/cAa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096504	178096504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	220	563	0	ENST00000397062.3:c.827C>T	p.Thr276Ile	p.T276I	ENST00000397062	NM_006164.4	276	aCa/aTa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178097298	178097298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	168	349	2	ENST00000397062.3:c.416C>T	p.Thr139Met	p.T139M	ENST00000397062	NM_006164.4	139	aCg/aTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202150022	202150022	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	141	418	0	ENST00000358485.4:c.1463T>C	p.Leu488Pro	p.L488P	ENST00000358485	NM_001080125.1	488	cTg/cCg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30648431	30648431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	134	476	0	ENST00000359013.4:c.56G>A	p.Arg19His	p.R19H	ENST00000359013	NM_001024847.2	19	cGt/cAt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71064727	71064727	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	140	455	0	ENST00000318789.4:c.947T>C	p.Val316Ala	p.V316A	ENST00000318789	NM_032682.5	316	gTg/gCg																																																																															
IRF4	3662	MSKCC	GRCh37	6	407527	407527	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs908661692		P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	138	517	0	ENST00000380956.4:c.1285G>A	p.Asp429Asn	p.D429N	ENST00000380956	NM_001195286.1	429	Gat/Aat																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778012	27778012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1506	292	1138	2	ENST00000369163.2:c.161G>A	p.Arg54His	p.R54H	ENST00000369163	NM_003536.2	54	cGc/cAc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738446	145738446	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	83	369	0	ENST00000428558.2:c.2539C>T	p.Gln847Ter	p.Q847*	ENST00000428558	NM_004260.3	847	Cag/Tag																																																																															
SYK	6850	MSKCC	GRCh37	9	93606365	93606365	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	82	524	0	ENST00000375746.1:c.185A>G	p.His62Arg	p.H62R	ENST00000375746	NM_001174167.1	62	cAc/cGc																																																																															
SYK	6850	MSKCC	GRCh37	9	93639968	93639968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	115	432	0	ENST00000375746.1:c.1297G>A	p.Val433Met	p.V433M	ENST00000375746	NM_001174167.1	433	Gtg/Atg																																																																															
RET	5979	MSKCC	GRCh37	10	43622047	43622047	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	76	373	0	ENST00000355710.3:c.3064A>G	p.Thr1022Ala	p.T1022A	ENST00000355710	NM_020975.4	1022	Act/Gct																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18691130	18691130	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	105	436	0	ENST00000266497.5:c.3241T>G	p.Phe1081Val	p.F1081V	ENST00000266497		1081	Ttt/Gtt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937670	32937670	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	75	221	0	ENST00000380152.3:c.8331G>T	p.Lys2777Asn	p.K2777N	ENST00000380152		2777	aaG/aaT																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346974	73346974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	135	273	0	ENST00000377767.4:c.1243C>T	p.His415Tyr	p.H415Y	ENST00000377767	NM_014953.3	415	Cac/Tac																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436713	110436713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	126	452	0	ENST00000375856.3:c.1688C>T	p.Ala563Val	p.A563V	ENST00000375856	NM_003749.2	563	gCg/gTg																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029245	14029245	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	194	561	0	ENST00000311895.7:c.1456A>G	p.Lys486Glu	p.K486E	ENST00000311895	NM_005236.2	486	Aaa/Gaa																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30315397	30315397	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	149	538	0	ENST00000322652.5:c.1082G>A	p.Trp361Ter	p.W361*	ENST00000322652	NM_015355.2	361	tGg/tAg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37646866	37646866	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141353560		P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	210	570	1	ENST00000447079.4:c.1988G>A	p.Arg663His	p.R663H	ENST00000447079	NM_015083.1	663	cGt/cAt																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453375	40453375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1023	230	971	0	ENST00000345506.4:c.1072G>A	p.Gly358Arg	p.G358R	ENST00000345506	NM_003152.3	358	Ggg/Agg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2206734	2206734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	173	620	0	ENST00000398665.3:c.794G>T	p.Arg265Ile	p.R265I	ENST00000398665	NM_032482.2	265	aGa/aTa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214748	5214748	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	68	367	0	ENST00000357368.4:c.4319-1G>T		p.X1440_splice	ENST00000357368	NM_002850.3	1440																																																																																
DNMT1	1786	MSKCC	GRCh37	19	10286283	10286283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	148	518	2	ENST00000340748.4:c.533G>A	p.Arg178Gln	p.R178Q	ENST00000340748		178	cGg/cAg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123673	11123673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	126	483	0	ENST00000344626.4:c.2323G>A	p.Gly775Ser	p.G775S	ENST00000344626	NM_003072.3	775	Ggc/Agc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52723007	52723007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	149	617	2	ENST00000322088.6:c.1192C>T	p.Arg398Trp	p.R398W	ENST00000322088	NM_014225.5	398	Cgg/Tgg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021182	31021182	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201899433		P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	142	562	0	ENST00000375687.4:c.1181G>A	p.Arg394His	p.R394H	ENST00000375687	NM_015338.5	394	cGt/cAt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164725	36164725	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	162	597	0	ENST00000300305.3:c.1150C>G	p.Pro384Ala	p.P384A	ENST00000300305		384	Ccc/Gcc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44514663	44514663	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	125	472	0	ENST00000291552.4:c.493C>T	p.Arg165Ter	p.R165*	ENST00000291552	NM_006758.2	165	Cga/Tga																																																																															
MED12	9968	MSKCC	GRCh37	X	70342606	70342606	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	198	317	0	ENST00000374080.3:c.1367T>C	p.Val456Ala	p.V456A	ENST00000374080		456	gTa/gCa																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375194	31375194	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	112	658	0	ENST00000328111.2:c.596del	p.Gly199AlafsTer27	p.G199Afs*27	ENST00000328111	NM_006892.3	197	caG/ca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391799	139391799	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	45	361	2	ENST00000277541.6:c.6392delG	p.Gly2131AlafsTer117	p.G2131Afs*117	ENST00000277541	NM_017617.3	2131	gGc/gc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513282	44513287	+	inframe_deletion	In_Frame_Del	DEL	CCACCG	CCACCG	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	39	336	0	ENST00000291552.4:c.648_653delCGGTGG	p.Gly222_Gly223del	p.G222_G223del	ENST00000291552	NM_006758.2	216	ggCGGTGGt/ggt																																																																															
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	140	507	1	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098477	11098477	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	76	257	3	ENST00000344626.4:c.999del	p.Gln335SerfsTer76	p.Q335Sfs*76	ENST00000344626	NM_003072.3	332	tCc/tc																																																																															
NF1	4763	MSKCC	GRCh37	17	29562958	29562958	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	196	608	1	ENST00000358273.4:c.3897del	p.Lys1299AsnfsTer10	p.K1299Nfs*10	ENST00000358273	NM_001042492.2	1298	cAa/ca																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067329	37067329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	147	498	0	ENST00000231790.2:c.1240del	p.Glu414ArgfsTer77	p.E414Rfs*77	ENST00000231790	NM_000249.3	414	Gag/ag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412058	63412059	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	197	472	0	ENST00000330258.3:c.1108dupG	p.Glu370GlyfsTer8	p.E370Gfs*8	ENST00000330258	NM_152424.3	370	gag/gGag																																																																															
MLH1	4292	MSKCC	GRCh37	3	37035140	37035142	+	inframe_deletion	In_Frame_Del	DEL	GAT	GAT	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	54	259	0	ENST00000231790.2:c.105_107del	p.Met35del	p.M35del	ENST00000231790	NM_000249.3	34	gaGATg/gag																																																																															
APC	324	MSKCC	GRCh37	5	112174264	112174267	+	frameshift_variant	Frame_Shift_Del	DEL	AAGT	AAGT	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	186	531	0	ENST00000257430.4:c.2977_2980del	p.Lys993PhefsTer11	p.K993Ffs*11	ENST00000257430	NM_000038.5	991	gaAAGT/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	79	449	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	26	257	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861129	57861129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	114	669	1	ENST00000228682.2:c.926G>A	p.Arg309Gln	p.R309Q	ENST00000228682	NM_005269.2	309	cGg/cAg																																																																															
INHA	3623	MSKCC	GRCh37	2	220439724	220439724	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201577506		P-0005468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	91	757	1	ENST00000243786.2:c.577G>A	p.Val193Ile	p.V193I	ENST00000243786	NM_002191.3	193	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057520007		P-0005468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	90	644	2	ENST00000269305.4:c.614A>T	p.Tyr205Phe	p.Y205F	ENST00000269305	NM_001126112.2	205	tAt/tTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245404	153245404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	185	501	0	ENST00000281708.4:c.1787C>T	p.Ser596Phe	p.S596F	ENST00000281708	NM_033632.3	596	tCt/tTt																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	335	614	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185181375	185181375	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	129	723	0	ENST00000265026.3:c.1316A>C	p.Lys439Thr	p.K439T	ENST00000265026	NM_004721.4	439	aAg/aCg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925711	114925711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1433	311	926	1	ENST00000543371.1:c.1789G>A	p.Val597Ile	p.V597I	ENST00000543371	NM_001198531.1	597	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	298	497	0	ENST00000269305.4:c.404G>C	p.Cys135Ser	p.C135S	ENST00000269305	NM_001126112.2	135	tGc/tCc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135798878	135798894	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCTGCAGGAGAAAAGG	ATCTGCAGGAGAAAAGG	-			P-0005522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	34	317	0	ENST00000298552.3:c.364-15_365del		p.X122_splice	ENST00000298552	NM_001162426.1	122																																																																																
APC	324	MSKCC	GRCh37	5	112175438	112175439	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0005522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	84	405	0	ENST00000257430.4:c.4147_4148delAT	p.Met1383ValfsTer2	p.M1383Vfs*2	ENST00000257430	NM_000038.5	1383	ATg/g																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021173	31021173	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	178	546	0	ENST00000375687.4:c.1173del	p.Glu391AspfsTer71	p.E391Dfs*71	ENST00000375687	NM_015338.5	391	gAa/ga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618643	37618643	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	374	419	0	ENST00000447079.4:c.319C>G	p.Arg107Gly	p.R107G	ENST00000447079	NM_015083.1	107	Cgc/Ggc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618617	37618639	+	frameshift_variant	Frame_Shift_Del	DEL	AACGTCGTGGATCAGATCGGAGC	AACGTCGTGGATCAGATCGGAGC	-			P-0005555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	367	389	0	ENST00000447079.4:c.293_315del	p.Glu98GlyfsTer21	p.E98Gfs*21	ENST00000447079	NM_015083.1	98	gAACGTCGTGGATCAGATCGGAGC/g																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627990	37627990	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	362	337	0	ENST00000447079.4:c.1905del	p.Leu635PhefsTer20	p.L635Ffs*20	ENST00000447079	NM_015083.1	635	ttA/tt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56412997	56412997	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1263	496	548	0	ENST00000348428.3:c.2011del	p.Arg671AspfsTer8	p.R671Dfs*8	ENST00000348428	NM_006785.3	671	Aga/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0005569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	464	436	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393701	139393701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	333	340	0	ENST00000277541.6:c.5945G>A	p.Arg1982Gln	p.R1982Q	ENST00000277541	NM_017617.3	1982	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0005589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	185	302	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0005589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	319	596	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0005589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	113	285	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952138	178952138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	146	255	0	ENST00000263967.3:c.3193C>T	p.His1065Tyr	p.H1065Y	ENST00000263967	NM_006218.2	1065	Cat/Tat																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920402	114920402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	364	633	0	ENST00000543371.1:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000543371	NM_001198531.1	448	cGg/cAg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436177	110436177	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	254	479	0	ENST00000375856.3:c.2224T>C	p.Tyr742His	p.Y742H	ENST00000375856	NM_003749.2	742	Tac/Cac																																																																															
APC	324	MSKCC	GRCh37	5	112175648	112175648	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	283	459	0	ENST00000257430.4:c.4358delC	p.Pro1453LeufsTer20	p.P1453Lfs*20	ENST00000257430	NM_000038.5	1453	Cct/ct																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591836	48591837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGG			P-0005589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	260	450	0	ENST00000342988.3:c.1000_1003dup	p.Val335AlafsTer7	p.V335Afs*7	ENST00000342988	NM_005359.5	333	-/CAGG																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429390	78429390	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	101	345	0	ENST00000370768.2:c.1052C>G	p.Pro351Arg	p.P351R	ENST00000370768	NM_003902.3	351	cCt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0005636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	155	492	1	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117626	70117626	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1377	111	418	0	ENST00000245479.2:c.94G>T	p.Gly32Cys	p.G32C	ENST00000245479	NM_000346.3	32	Ggc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291040	15291040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	58	466	0	ENST00000263388.2:c.3170C>T	p.Ala1057Val	p.A1057V	ENST00000263388	NM_000435.2	1057	gCg/gTg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123195630	123195630	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	48	131	0	ENST00000218089.9:c.1544A>T	p.Asp515Val	p.D515V	ENST00000218089	NM_001042749.1	515	gAt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	125	781	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176012877	176012877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	141	935	0	ENST00000367669.3:c.1499G>A	p.Gly500Glu	p.G500E	ENST00000367669	NM_022457.5	500	gGa/gAa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056314	26056314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	76	493	0	ENST00000343677.2:c.343G>A	p.Glu115Lys	p.E115K	ENST00000343677	NM_005319.3	115	Gaa/Aaa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001155	150001155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	177	957	0	ENST00000253339.5:c.2449G>A	p.Glu817Lys	p.E817K	ENST00000253339		817	Gaa/Aaa																																																																															
MLL3	58508	MSKCC	GRCh37	7	151946988	151946988	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	126	800	1	ENST00000262189.6:c.1786C>G	p.Leu596Val	p.L596V	ENST00000262189	NM_170606.2	596	Ctt/Gtt																																																																															
MLL3	58508	MSKCC	GRCh37	7	151946996	151946996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	124	801	1	ENST00000262189.6:c.1778C>T	p.Ser593Leu	p.S593L	ENST00000262189	NM_170606.2	593	tCa/tTa																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195379	102195379	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	235	1161	0	ENST00000263464.3:c.139G>C	p.Glu47Gln	p.E47Q	ENST00000263464	NM_001165.4	47	Gaa/Caa																																																																															
CDH1	999	MSKCC	GRCh37	16	68846135	68846135	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	96	795	0	ENST00000261769.5:c.1106A>C	p.Asn369Thr	p.N369T	ENST00000261769	NM_004360.3	369	aAc/aCc																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216714	7216714	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	193	1253	0	ENST00000380728.2:c.709C>T	p.Gln237Ter	p.Q237*	ENST00000380728		237	Cag/Tag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061223	38061228	+	inframe_deletion	In_Frame_Del	DEL	TCTCGA	TCTCGA	-			P-0005760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	129	394	0	ENST00000250448.2:c.761_766del	p.Phe254_Asn256delinsTyr	p.F254_N256delinsY	ENST00000250448	NM_004496.3	254	tTCGAGAac/tac																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258683	16258683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	69	720	2	ENST00000375759.3:c.5948C>T	p.Ser1983Leu	p.S1983L	ENST00000375759	NM_015001.2	1983	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578462	7578463	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	166	670	0	ENST00000269305.4:c.467dupG	p.Val157ArgfsTer24	p.V157Rfs*24	ENST00000269305	NM_001126112.2	156	cgc/cgGc																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804273	46804274	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0005787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1039	148	1045	1	ENST00000290295.7:c.733_734delAA	p.Lys245GlufsTer76	p.K245Efs*76	ENST00000290295	NM_006361.5	245	AAg/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0005790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	329	565	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884909	134884909	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	191	420	3	ENST00000398015.3:c.1685T>C	p.Val562Ala	p.V562A	ENST00000398015	NM_004441.4	562	gTc/gCc																																																																															
APC	324	MSKCC	GRCh37	5	112176263	112176263	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	98	487	0	ENST00000257430.4:c.4972A>C	p.Ser1658Arg	p.S1658R	ENST00000257430	NM_000038.5	1658	Agt/Cgt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	404935	404935	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	25	431	0	ENST00000399788.2:c.4259C>G	p.Pro1420Arg	p.P1420R	ENST00000399788	NM_001042603.1	1420	cCt/cGt																																																																															
MLL2	8085	MSKCC	GRCh37	12	49446426	49446426	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	194	454	0	ENST00000301067.7:c.1179A>C	p.Gln393His	p.Q393H	ENST00000301067	NM_003482.3	393	caA/caC																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599846	10599878	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCCCCGCCCCCAGGGCCTCACCAAGGACGTAG	TTCCCCGCCCCCAGGGCCTCACCAAGGACGTAG	-			P-0005790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	137	437	0	ENST00000171111.5:c.1698_1708+22del		p.X566_splice	ENST00000171111	NM_203500.1	566																																																																																
RB1	5925	MSKCC	GRCh37	13	48919322	48919337	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	AGCAAATTGGAAAGGT	AGCAAATTGGAAAGGT	-			P-0005790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	70	289	0	ENST00000267163.4:c.488_500+3del		p.X163_splice	ENST00000267163	NM_000321.2	163																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602847	10602865	+	frameshift_variant	Frame_Shift_Del	DEL	TCGGACTCGCAGCGCACGT	TCGGACTCGCAGCGCACGT	-			P-0005790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	87	525	0	ENST00000171111.5:c.713_731del	p.Asn238ArgfsTer33	p.N238Rfs*33	ENST00000171111	NM_203500.1	238	aACGTGCGCTGCGAGTCCGAg/ag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602574	10602575	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGT			P-0005790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	50	464	0	ENST00000171111.5:c.1001_1003dup	p.Tyr334dup	p.Y334dup	ENST00000171111	NM_203500.1	334	ttc/tACTtc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192544	138192551	+	frameshift_variant	Frame_Shift_Del	DEL	TCGGGAGA	TCGGGAGA	-			P-0005790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	279	431	0	ENST00000237289.4:c.182_189del	p.Arg61HisfsTer37	p.R61Hfs*37	ENST00000237289	NM_001270507.1	60	ttTCGGGAGAtc/tttc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0005818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	59	284	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	129	546	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
INSR	3643	MSKCC	GRCh37	19	7152908	7152908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	104	602	0	ENST00000302850.5:c.2060C>A	p.Pro687Gln	p.P687Q	ENST00000302850	NM_000208.2	687	cCa/cAa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111452	8111453	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	93	608	0	ENST00000346208.3:c.939dup	p.Gly314ArgfsTer38	p.G314Rfs*38	ENST00000346208		313	gca/gcAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	281	385	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112177930	112177930	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35540155		P-0005851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	38	402	0	ENST00000257430.4:c.6639G>A	p.Met2213Ile	p.M2213I	ENST00000257430	NM_000038.5	2213	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0005851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	235	613	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105612	27105612	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	82	663	0	ENST00000324856.7:c.5223G>C	p.Gln1741His	p.Q1741H	ENST00000324856	NM_006015.4	1741	caG/caC																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105712	27105712	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	92	500	0	ENST00000324856.7:c.5323G>T	p.Glu1775Ter	p.E1775*	ENST00000324856	NM_006015.4	1775	Gag/Tag																																																																															
ALK	238	MSKCC	GRCh37	2	30143189	30143189	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	121	288	1	ENST00000389048.3:c.337G>T	p.Gly113Cys	p.G113C	ENST00000389048	NM_004304.4	113	Ggt/Tgt																																																																															
BCL6	604	MSKCC	GRCh37	3	187447778	187447778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	209	368	1	ENST00000232014.4:c.415C>T	p.Pro139Ser	p.P139S	ENST00000232014	NM_001130845.1	139	Cct/Tct																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213800	66213800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	31	455	1	ENST00000273854.3:c.2630G>A	p.Arg877Lys	p.R877K	ENST00000273854	NM_004439.5	877	aGa/aAa																																																																															
APC	324	MSKCC	GRCh37	5	112176200	112176200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	46	478	0	ENST00000257430.4:c.4909G>A	p.Asp1637Asn	p.D1637N	ENST00000257430	NM_000038.5	1637	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112177441	112177441	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	91	532	0	ENST00000257430.4:c.6150G>C	p.Lys2050Asn	p.K2050N	ENST00000257430	NM_000038.5	2050	aaG/aaC																																																																															
APC	324	MSKCC	GRCh37	5	112178853	112178853	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	54	440	0	ENST00000257430.4:c.7562G>T	p.Arg2521Ile	p.R2521I	ENST00000257430	NM_000038.5	2521	aGa/aTa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508473	106508473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	154	194	0	ENST00000359195.3:c.467C>A	p.Ala156Glu	p.A156E	ENST00000359195	NM_002649.2	156	gCg/gAg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520072	106520072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	34	349	0	ENST00000359195.3:c.2500C>T	p.His834Tyr	p.H834Y	ENST00000359195	NM_002649.2	834	Cat/Tat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8375990	8375990	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142960593		P-0005851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	67	620	1	ENST00000356435.5:c.4607G>A	p.Arg1536His	p.R1536H	ENST00000356435		1536	cGt/cAt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518118	8518118	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	98	379	0	ENST00000356435.5:c.1273C>A	p.Gln425Lys	p.Q425K	ENST00000356435		425	Cag/Aag																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811634	102811634	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	75	553	0	ENST00000307046.8:c.550A>C	p.Ser184Arg	p.S184R	ENST00000307046	NM_001111285.1	184	Agt/Cgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133238234	133238234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	144	538	0	ENST00000320574.5:c.2743G>A	p.Glu915Lys	p.E915K	ENST00000320574	NM_006231.2	915	Gag/Aag																																																																															
NF1	4763	MSKCC	GRCh37	17	29585470	29585470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	79	286	0	ENST00000358273.4:c.4282G>T	p.Asp1428Tyr	p.D1428Y	ENST00000358273	NM_001042492.2	1428	Gat/Tat																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533065	63533065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	167	548	0	ENST00000307078.5:c.1829G>A	p.Arg610Gln	p.R610Q	ENST00000307078	NM_004655.3	610	cGg/cAg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368239	45368239	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	35	575	0	ENST00000262160.6:c.1363C>T	p.Gln455Ter	p.Q455*	ENST00000262160	NM_005901.5	455	Cag/Tag																																																																															
MED12	9968	MSKCC	GRCh37	X	70343057	70343057	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	85	366	1	ENST00000374080.3:c.1598A>G	p.Gln533Arg	p.Q533R	ENST00000374080		533	cAg/cGg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417580	139417580	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1094	302	636	0	ENST00000277541.6:c.464G>C	p.Cys155Ser	p.C155S	ENST00000277541	NM_017617.3	155	tGc/tCc																																																																															
INSR	3643	MSKCC	GRCh37	19	7184388	7184388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	261	490	0	ENST00000302850.5:c.913G>A	p.Val305Ile	p.V305I	ENST00000302850	NM_000208.2	305	Gtc/Atc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803516	1803564	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGGTGAGGGAGGGGGTGGCCCCTGAGCGTCATCTGCCCCCACAGAGC	GGTGGTGAGGGAGGGGGTGGCCCCTGAGCGTCATCTGCCCCCACAGAGC	-			P-0005898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	60	172	2	ENST00000260795.2:c.740-45_743del		p.X247_splice	ENST00000260795		247																																																																																
NFKBIA	4792	MSKCC	GRCh37	14	35871987	35871988	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAT			P-0005898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1393	328	805	0	ENST00000216797.5:c.623_625dup	p.Asp208dup	p.D208dup	ENST00000216797	NM_020529.2	208	gtc/gATGtc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	22	267	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653857	89653857	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	64	363	0	ENST00000371953.3:c.155del	p.Asp52ValfsTer2	p.D52Vfs*2	ENST00000371953	NM_000314.4	52	gAt/gt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178056	56178071	+	frameshift_variant	Frame_Shift_Del	DEL	TTCCCTGCAGAATACC	TTCCCTGCAGAATACC	-			P-0005932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	70	271	0	ENST00000399503.3:c.3032_3047del	p.Pro1011LeufsTer66	p.P1011Lfs*66	ENST00000399503	NM_005921.1	1010	aTTCCCTGCAGAATACCt/at																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0005942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	383	580	1	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984084	2984084	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	66	324	0	ENST00000396946.4:c.446G>C	p.Arg149Pro	p.R149P	ENST00000396946	NM_032415.4	149	cGc/cCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0005942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	231	432	1	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
STK11	6794	MSKCC	GRCh37	19	1220641	1220641	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	304	525	0	ENST00000326873.7:c.659A>C	p.Gln220Pro	p.Q220P	ENST00000326873	NM_000455.4	220	cAg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578378	7578379	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0005942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	84	321	0	ENST00000269305.4:c.550_551dup	p.Asp184GlufsTer64	p.D184Efs*64	ENST00000269305	NM_001126112.2	184	gat/gaGAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735466	40735466	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182388300		P-0005949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	138	546	2	ENST00000373198.4:c.3407G>A	p.Arg1136His	p.R1136H	ENST00000373198	NM_133170.3	1136	cGt/cAt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259335	89259335	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750779844		P-0005949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	136	557	0	ENST00000336596.2:c.479G>A	p.Arg160His	p.R160H	ENST00000336596	NM_005233.5	160	cGt/cAt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371662	55371662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	235	544	1	ENST00000297316.4:c.352G>A	p.Val118Met	p.V118M	ENST00000297316	NM_022454.3	118	Gtg/Atg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112884175	112884175	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	45	355	0	ENST00000351677.2:c.110A>C	p.Asn37Thr	p.N37T	ENST00000351677	NM_002834.3	37	aAc/aCc																																																																															
BLM	641	MSKCC	GRCh37	15	91295029	91295029	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	30	429	0	ENST00000355112.3:c.812A>G	p.Lys271Arg	p.K271R	ENST00000355112	NM_000057.2	271	aAg/aGg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16055263	16055263	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	89	480	0	ENST00000268712.3:c.839A>T	p.Lys280Met	p.K280M	ENST00000268712	NM_006311.3	280	aAg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0005959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	331	499	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
ATM	472	MSKCC	GRCh37	11	108218052	108218052	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	51	559	0	ENST00000278616.4:c.8631G>C	p.Leu2877Phe	p.L2877F	ENST00000278616	NM_000051.3	2877	ttG/ttC																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476310	88476310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	54	611	2	ENST00000360948.2:c.1822G>A	p.Gly608Ser	p.G608S	ENST00000360948	NM_001012338.2	608	Ggc/Agc																																																																															
MST1	4485	MSKCC	GRCh37	3	49725264	49725264	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142358513		P-0005959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	14	132	0	ENST00000449682.2:c.161C>T	p.Ala54Val	p.A54V	ENST00000449682	NM_020998.3	54	gCg/gTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636796	8636796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	118	617	0	ENST00000356435.5:c.113G>T	p.Gly38Val	p.G38V	ENST00000356435		38	gGc/gTc																																																																															
RET	5979	MSKCC	GRCh37	10	43622074	43622074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	42	561	1	ENST00000355710.3:c.3091G>T	p.Asp1031Tyr	p.D1031Y	ENST00000355710	NM_020975.4	1031	Gac/Tac																																																																															
ATM	472	MSKCC	GRCh37	11	108114679	108114679	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0005959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	40	210	0	ENST00000278616.4:c.497-1G>T		p.X166_splice	ENST00000278616	NM_000051.3	166																																																																																
ANKRD11	29123	MSKCC	GRCh37	16	89350270	89350270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	90	966	2	ENST00000301030.4:c.2680G>A	p.Ala894Thr	p.A894T	ENST00000301030	NM_001256183.1	894	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	73	352	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144442	11144442	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0005975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	154	451	0	ENST00000344626.4:c.3775-1G>A		p.X1259_splice	ENST00000344626	NM_003072.3	1259																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52678783	52678784	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	84	271	0	ENST00000394830.3:c.835dupA	p.Ile279AsnfsTer8	p.I279Nfs*8	ENST00000394830	NM_018313.4	279	ata/aAta																																																																															
NSD1	64324	MSKCC	GRCh37	5	176639139	176639139	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	48	219	0	ENST00000439151.2:c.3739A>G	p.Met1247Val	p.M1247V	ENST00000439151	NM_022455.4	1247	Atg/Gtg																																																																															
SUFU	51684	MSKCC	GRCh37	10	104377169	104377169	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	143	689	0	ENST00000369902.3:c.1280A>T	p.His427Leu	p.H427L	ENST00000369902	NM_016169.3	427	cAt/cTt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244838	41244838	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	82	389	0	ENST00000357654.3:c.2710G>T	p.Glu904Ter	p.E904*	ENST00000357654	NM_007294.3	904	Gaa/Taa																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59853819	59853819	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	140	639	0	ENST00000259008.2:c.2040G>T	p.Leu680Phe	p.L680F	ENST00000259008	NM_032043.2	680	ttG/ttT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144058	11144058	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	132	626	0	ENST00000344626.4:c.3639G>C	p.Lys1213Asn	p.K1213N	ENST00000344626	NM_003072.3	1213	aaG/aaC																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144802	11144802	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	100	457	0	ENST00000344626.4:c.3877G>T	p.Glu1293Ter	p.E1293*	ENST00000344626	NM_003072.3	1293	Gaa/Taa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602280	10602280	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	97	425	0	ENST00000171111.5:c.1298del	p.Gly433AlafsTer25	p.G433Afs*25	ENST00000171111	NM_203500.1	433	gGc/gc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207092	1207092	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	138	588	0	ENST00000326873.7:c.180del	p.Tyr60Ter	p.Y60*	ENST00000326873	NM_000455.4	60	taC/ta																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0005985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	442	573	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	96	289	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0005985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	730	350	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47672732	47672732	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	492	608	0	ENST00000233146.2:c.1322C>A	p.Thr441Asn	p.T441N	ENST00000233146	NM_000251.2	441	aCt/aAt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81574742	81574742	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	272	618	0	ENST00000298171.2:c.638T>A	p.Leu213Gln	p.L213Q	ENST00000298171	NM_000369.2	213	cTg/cAg																																																																															
BLM	641	MSKCC	GRCh37	15	91312750	91312750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	210	594	0	ENST00000355112.3:c.2489C>T	p.Thr830Met	p.T830M	ENST00000355112	NM_000057.2	830	aCg/aTg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123176464	123176464	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1539	374	712	0	ENST00000218089.9:c.431T>C	p.Ile144Thr	p.I144T	ENST00000218089	NM_001042749.1	144	aTa/aCa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830416	72830417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	223	572	0	ENST00000268489.5:c.6164dup	p.Pro2056AlafsTer100	p.P2056Afs*100	ENST00000268489	NM_006885.3	2055	ccg/ccCg																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0006085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	90	297	0	ENST00000397752.3:c.3028+1del		p.D1010fs	ENST00000397752	NM_000245.2	1010	Gat/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	245	377	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	106	334	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc																																																																															
ALK	238	MSKCC	GRCh37	2	29436901	29436901	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	268	550	0	ENST00000389048.3:c.3692G>T	p.Arg1231Leu	p.R1231L	ENST00000389048	NM_004304.4	1231	cGg/cTg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856568	111856568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	46	186	2	ENST00000341259.2:c.619G>A	p.Asp207Asn	p.D207N	ENST00000341259	NM_005475.2	207	Gac/Aac																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120016	70120016	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			53	33	58	0	ENST00000245479.2:c.1018C>T	p.Gln340Ter	p.Q340*	ENST00000245479	NM_000346.3	340	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112174301	112174311	+	frameshift_variant	Frame_Shift_Del	DEL	CTAGCCCATAA	CTAGCCCATAA	-			P-0006110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	91	402	0	ENST00000257430.4:c.3010_3020del	p.Leu1004AsnfsTer3	p.L1004Nfs*3	ENST00000257430	NM_000038.5	1004	CTAGCCCATAAa/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578248	7578249	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0006110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	285	572	0	ENST00000269305.4:c.599_600dup	p.Leu201IlefsTer47	p.L201Ifs*47	ENST00000269305	NM_001126112.2	200	-/AT																																																																															
H3F3B	3021	MSKCC	GRCh37	17	73774771	73774774	+	frameshift_variant	Frame_Shift_Del	DEL	CGAA	CGAA	-			P-0006110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	214	391	0	ENST00000254810.4:c.313_316del	p.Phe105LysfsTer33	p.F105Kfs*33	ENST00000254810	NM_005324.3	105	TTCGaa/aa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115853	8115854	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	131	494	0	ENST00000346208.3:c.1200dup	p.Ser401ValfsTer106	p.S401Vfs*106	ENST00000346208		400	atg/atGg																																																																															
MLL3	58508	MSKCC	GRCh37	7	151877154	151877154	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	47	346	1	ENST00000262189.6:c.7207C>T	p.Arg2403Ter	p.R2403*	ENST00000262189	NM_170606.2	2403	Cga/Tga																																																																															
MLL3	58508	MSKCC	GRCh37	7	151900033	151900037	+	frameshift_variant	Frame_Shift_Del	DEL	GGAAA	GGAAA	-			P-0006137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	77	439	0	ENST00000262189.6:c.4074_4078del	p.Phe1359CysfsTer17	p.F1359Cfs*17	ENST00000262189	NM_170606.2	1358	acTTTCCct/acct																																																																															
MED12	9968	MSKCC	GRCh37	X	70345211	70345214	+	frameshift_variant	Frame_Shift_Del	DEL	GCAG	GCAG	-			P-0006137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	49	614	0	ENST00000374080.3:c.2237_2240del	p.Cys746SerfsTer33	p.C746Sfs*33	ENST00000374080		746	tGCAGc/tc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6048644	6048644	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	136	396	2	ENST00000265849.7:c.7C>T	p.Arg3Ter	p.R3*	ENST00000265849	NM_000535.5	3	Cga/Tga																																																																															
MST1R	4486	MSKCC	GRCh37	3	49927986	49927986	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372063160		P-0006150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1158	227	580	0	ENST00000296474.3:c.3742C>T	p.Arg1248Cys	p.R1248C	ENST00000296474	NM_002447.2	1248	Cgc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273029	55273029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	148	441	0	ENST00000275493.2:c.3352G>T	p.Ala1118Ser	p.A1118S	ENST00000275493	NM_005228.3	1118	Gcg/Tcg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23635329	23635329	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0006150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	94	408	0	ENST00000261584.4:c.2834+1G>T		p.X945_splice	ENST00000261584	NM_024675.3	945																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971198	21971199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	48	157	0	ENST00000304494.5:c.159dup	p.Met54AspfsTer66	p.M54Dfs*66	ENST00000304494	NM_000077.4	53	-/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578458	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0006150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	126	480	1	ENST00000269305.4:c.472_473delinsTT	p.Arg158Phe	p.R158F	ENST00000269305	NM_001126112.2	158	CGc/TTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	313	520	0	ENST00000269305.4:c.842A>G	p.Asp281Gly	p.D281G	ENST00000269305	NM_001126112.2	281	gAc/gGc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1327720	1327720	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	128	278	0	ENST00000381566.1:c.161C>G	p.Thr54Ser	p.T54S	ENST00000381566		54	aCc/aGc																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913233		P-0006231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	236	609	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873066	134873066	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762457030		P-0006231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	288	663	1	ENST00000398015.3:c.1370C>T	p.Pro457Leu	p.P457L	ENST00000398015	NM_004441.4	457	cCg/cTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98247998	98247998	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	223	510	0	ENST00000331920.6:c.553G>T	p.Ala185Ser	p.A185S	ENST00000331920	NM_000264.3	185	Gcc/Tcc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786197	3786197	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	253	535	0	ENST00000262367.5:c.4568del	p.Phe1523SerfsTer27	p.F1523Sfs*27	ENST00000262367	NM_004380.2	1523	tTc/tc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618688	37618689	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0006231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	1081	768	1	ENST00000447079.4:c.364_365del	p.Leu122ThrfsTer4	p.L122Tfs*4	ENST00000447079	NM_015083.1	122	TTa/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7579348	7579348	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	128	694	0	ENST00000269305.4:c.339del	p.Leu114CysfsTer9	p.L114Cfs*9	ENST00000269305	NM_001126112.2	113	ttC/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	285	510	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437605	56437605	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1329721997		P-0006260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	195	513	0	ENST00000407977.2:c.857G>A	p.Arg286Gln	p.R286Q	ENST00000407977		286	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	70	644	0	ENST00000342988.3:c.1081C>A	p.Arg361Ser	p.R361S	ENST00000342988	NM_005359.5	361	Cgc/Agc																																																																															
ALK	238	MSKCC	GRCh37	2	29446310	29446310	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138589984		P-0006260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	135	881	0	ENST00000389048.3:c.3257C>T	p.Ser1086Leu	p.S1086L	ENST00000389048	NM_004304.4	1086	tCg/tTg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56871538	56871538	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	142	656	0	ENST00000308159.5:c.1918G>C	p.Glu640Gln	p.E640Q	ENST00000308159	NM_014669.4	640	Gag/Cag																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943399	17943399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	126	640	1	ENST00000458235.1:c.2609G>A	p.Arg870Gln	p.R870Q	ENST00000458235	NM_000215.3	870	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0006287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	38	152	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0006287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			52	29	238	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845904	156845904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	26	287	1	ENST00000524377.1:c.1534C>T	p.Leu512Phe	p.L512F	ENST00000524377	NM_002529.3	512	Ctc/Ttc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157495215	157495215	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	46	202	0	ENST00000346085.5:c.3099A>C	p.Lys1033Asn	p.K1033N	ENST00000346085	NM_020732.3	1033	aaA/aaC																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729491	41729491	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	48	336	0	ENST00000242208.4:c.1038T>G	p.His346Gln	p.H346Q	ENST00000242208	NM_002192.2	346	caT/caG																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920448	114920448	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0006287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	48	276	0	ENST00000543371.1:c.1389C>G	p.Cys463Trp	p.C463W	ENST00000543371	NM_001198531.1	463	tgC/tgG																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266037	41266620	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	ATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTG	ATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTG	-			P-0006287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	33	204	0	ENST00000349496.5:c.36_419del		p.X12_splice	ENST00000349496	NM_001904.3	12	ATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTG/-																																																																															
CDC73	79577	MSKCC	GRCh37	1	193107222	193107222	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	18	168	0	ENST00000367435.3:c.431del	p.Glu144GlyfsTer58	p.E144Gfs*58	ENST00000367435	NM_024529.4	144	gAg/gg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	65	190	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FLT1	2321	MSKCC	GRCh37	13	28891686	28891686	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143726778		P-0006315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	151	481	0	ENST00000282397.4:c.3335G>A	p.Arg1112His	p.R1112H	ENST00000282397	NM_002019.4	1112	cGc/cAc																																																																															
CBL	867	MSKCC	GRCh37	11	119142456	119142456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	105	276	0	ENST00000264033.4:c.455C>T	p.Thr152Ile	p.T152I	ENST00000264033	NM_005188.3	152	aCc/aTc																																																																															
CDH1	999	MSKCC	GRCh37	16	68849442	68849442	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	117	335	0	ENST00000261769.5:c.1345C>T	p.Gln449Ter	p.Q449*	ENST00000261769	NM_004360.3	449	Cag/Tag																																																																															
ATRX	546	MSKCC	GRCh37	X	76939351	76939351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	130	440	0	ENST00000373344.5:c.1397G>T	p.Arg466Ile	p.R466I	ENST00000373344	NM_000489.3	466	aGa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	145	406	0	ENST00000269305.4:c.472C>G	p.Arg158Gly	p.R158G	ENST00000269305	NM_001126112.2	158	Cgc/Ggc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11184625	11184625	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	64	467	0	ENST00000361445.4:c.6592G>T	p.Val2198Leu	p.V2198L	ENST00000361445	NM_004958.3	2198	Gtg/Ttg																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799817	72799817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	108	399	0	ENST00000325599.8:c.1352G>T	p.Ser451Ile	p.S451I	ENST00000325599	NM_018130.2	451	aGc/aTc																																																																															
ATR	545	MSKCC	GRCh37	3	142224010	142224010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	84	493	0	ENST00000350721.4:c.5167G>T	p.Asp1723Tyr	p.D1723Y	ENST00000350721	NM_001184.3	1723	Gac/Tac																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430639	181430639	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	64	313	0	ENST00000325404.1:c.491A>T	p.Asn164Ile	p.N164I	ENST00000325404	NM_003106.3	164	aAc/aTc																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185190905	185190905	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1357	73	691	2	ENST00000265026.3:c.1786A>G	p.Arg596Gly	p.R596G	ENST00000265026	NM_004721.4	596	Aga/Gga																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55152018	55152018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs79948560		P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	89	397	1	ENST00000257290.5:c.2450G>A	p.Arg817His	p.R817H	ENST00000257290	NM_006206.4	817	cGt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557831	187557831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	109	433	2	ENST00000441802.2:c.3880G>T	p.Gly1294Trp	p.G1294W	ENST00000441802	NM_005245.3	1294	Ggg/Tgg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38287311	38287311	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	126	532	0	ENST00000425967.3:c.346G>T	p.Gly116Trp	p.G116W	ENST00000425967	NM_001174067.1	116	Ggg/Tgg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81528556	81528556	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	49	330	0	ENST00000298171.2:c.235T>C	p.Ser79Pro	p.S79P	ENST00000298171	NM_000369.2	79	Tcc/Ccc																																																																															
CDH1	999	MSKCC	GRCh37	16	68855998	68855998	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1232	74	508	0	ENST00000261769.5:c.1806C>G	p.Phe602Leu	p.F602L	ENST00000261769	NM_004360.3	602	ttC/ttG																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264459	30264459	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	118	387	0	ENST00000322652.5:c.194G>T	p.Gly65Val	p.G65V	ENST00000322652	NM_015355.2	65	gGg/gTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	93	422	0	ENST00000326873.7:c.709G>T	p.Asp237Tyr	p.D237Y	ENST00000326873	NM_000455.4	237	Gac/Tac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944592	40944592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	66	242	0	ENST00000373198.4:c.1910G>T	p.Arg637Leu	p.R637L	ENST00000373198	NM_133170.3	637	cGg/cTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932654	39932654	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1274	148	742	2	ENST00000378444.4:c.1945C>A	p.Pro649Thr	p.P649T	ENST00000378444	NM_001123385.1	649	Cca/Aca																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53247530	53247530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1255	130	625	0	ENST00000375401.3:c.279G>T	p.Trp93Cys	p.W93C	ENST00000375401	NM_004187.3	93	tgG/tgT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410853	63410853	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	62	615	0	ENST00000330258.3:c.2314G>T	p.Ala772Ser	p.A772S	ENST00000330258	NM_152424.3	772	Gcc/Tcc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2206753	2206754	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1189	127	551	0	ENST00000398665.3:c.816dup	p.Ala273CysfsTer10	p.A273Cfs*10	ENST00000398665	NM_032482.2	271	-/T																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11136995	11136996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	117	441	0	ENST00000344626.4:c.3192dup	p.Phe1065ValfsTer17	p.F1065Vfs*17	ENST00000344626	NM_003072.3	1063	ttg/ttGg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25459874	25459875	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	87	476	0	ENST00000264709.3:c.2409-1_2409delinsTT		p.X803_splice	ENST00000264709	NM_175629.2	803																																																																																
ANKRD11	29123	MSKCC	GRCh37	16	89347552	89347552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	135	451	0	ENST00000301030.4:c.5398G>A	p.Glu1800Lys	p.E1800K	ENST00000301030	NM_001256183.1	1800	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68863628	68863628	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	241	285	0	ENST00000261769.5:c.2368del	p.Thr790ProfsTer3	p.T790Pfs*3	ENST00000261769	NM_004360.3	789	ccA/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	60	323	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1202793339		P-0006351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	38	386	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
ALK	238	MSKCC	GRCh37	2	29543657	29543657	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	91	527	0	ENST00000389048.3:c.1506G>T	p.Gln502His	p.Q502H	ENST00000389048	NM_004304.4	502	caG/caT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629928	187629928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	81	406	0	ENST00000441802.2:c.1054G>T	p.Val352Phe	p.V352F	ENST00000441802	NM_005245.3	352	Gtc/Ttc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168735	56168735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	44	353	1	ENST00000399503.3:c.1589G>T	p.Gly530Val	p.G530V	ENST00000399503	NM_005921.1	530	gGa/gTa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56864521	56864521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	95	557	0	ENST00000308159.5:c.1009G>T	p.Val337Leu	p.V337L	ENST00000308159	NM_014669.4	337	Gta/Tta																																																																															
STK11	6794	MSKCC	GRCh37	19	1220695	1220695	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	53	289	0	ENST00000326873.7:c.713T>A	p.Ile238Asn	p.I238N	ENST00000326873	NM_000455.4	238	aTc/aAc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091758	29091758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	36	147	0	ENST00000328354.6:c.1199G>T	p.Gly400Val	p.G400V	ENST00000328354	NM_007194.3	400	gGg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	95	483	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374883	45374883	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	142	501	1	ENST00000262160.6:c.960C>A	p.Asn320Lys	p.N320K	ENST00000262160	NM_005901.5	320	aaC/aaA																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729089	66729100	+	frameshift_variant	Frame_Shift_Del	DEL	TCATCTGGAGAT	TCATCTGGAGAT	AG			P-0006378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	140	551	0	ENST00000307102.5:c.297_308delinsAG	p.His100AlafsTer10	p.H100Afs*10	ENST00000307102	NM_002755.3	99	atTCATCTGGAGATc/atAGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	352	341	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221161	5221161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	542	466	0	ENST00000357368.4:c.3305G>A	p.Arg1102His	p.R1102H	ENST00000357368	NM_002850.3	1102	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0006394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	231	341	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872741	136872741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	273	691	0	ENST00000241393.3:c.757C>A	p.Leu253Met	p.L253M	ENST00000241393	NM_003467.2	253	Ctg/Atg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103716	47103716	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs981018402		P-0006394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	481	476	0	ENST00000409792.3:c.6230G>A	p.Arg2077Gln	p.R2077Q	ENST00000409792	NM_014159.6	2077	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112170788	112170789	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0006394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	132	523	0	ENST00000257430.4:c.1885_1886del	p.Leu629SerfsTer4	p.L629Sfs*4	ENST00000257430	NM_000038.5	628	acTTta/acta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	196	433	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181765	56181765	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	190	349	0	ENST00000399503.3:c.3989C>G	p.Ser1330Trp	p.S1330W	ENST00000399503	NM_005921.1	1330	tCg/tGg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572261	64572261	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	302	566	2	ENST00000337652.1:c.1393C>T	p.Arg465Ter	p.R465*	ENST00000337652	NM_130803.2	465	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578435	7578435	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	230	403	0	ENST00000269305.4:c.495G>T	p.Gln165His	p.Q165H	ENST00000269305	NM_001126112.2	165	caG/caT																																																																															
NF1	4763	MSKCC	GRCh37	17	29661994	29661994	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	210	427	0	ENST00000358273.4:c.5951A>G	p.Asn1984Ser	p.N1984S	ENST00000358273	NM_001042492.2	1984	aAt/aGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155721	56155722	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0006406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	190	394	0	ENST00000399503.3:c.816_817del	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	271	agAAaa/agaa																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	100	249	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1192	188	607	1	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371645	55371645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1109	129	532	0	ENST00000297316.4:c.335C>T	p.Ala112Val	p.A112V	ENST00000297316	NM_022454.3	112	gCg/gTg																																																																															
RB1	5925	MSKCC	GRCh37	13	48955581	48955581	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0006432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	76	301	0	ENST00000267163.4:c.1695+2T>G		p.X565_splice	ENST00000267163	NM_000321.2	565																																																																																
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			43	45	377	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32945129	32945129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	20	472	0	ENST00000380152.3:c.8524C>T	p.Arg2842Cys	p.R2842C	ENST00000380152		2842	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0006526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	161	307	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741559	145741559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	72	532	0	ENST00000428558.2:c.944C>T	p.Ser315Leu	p.S315L	ENST00000428558	NM_004260.3	315	tCg/tTg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123276833	123276833	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	23	437	0	ENST00000358487.5:c.1084G>T	p.Ala362Ser	p.A362S	ENST00000358487	NM_000141.4	362	Gcg/Tcg																																																																															
SRC	6714	MSKCC	GRCh37	20	36028691	36028691	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	35	399	0	ENST00000358208.4:c.1033A>T	p.Ser345Cys	p.S345C	ENST00000358208		345	Agc/Tgc																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288345	21288345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	42	533	0	ENST00000354336.3:c.590G>A	p.Ser197Asn	p.S197N	ENST00000354336	NM_005207.3	197	aGt/aAt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111562	8111562	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs112399242		P-0006556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	204	372	0	ENST00000346208.3:c.1047+1G>A		p.X349_splice	ENST00000346208		349																																																																																
KDM5A	5927	MSKCC	GRCh37	12	404937	404937	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	225	393	0	ENST00000399788.2:c.4257del	p.Gln1419HisfsTer31	p.Q1419Hfs*31	ENST00000399788	NM_001042603.1	1419	caA/ca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16263728	16263729	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	183	381	0	ENST00000375759.3:c.10098dup	p.Pro3367ThrfsTer48	p.P3367Tfs*48	ENST00000375759	NM_015001.2	3366	gca/gcAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	47	283	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	23	228	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KIT	3815	MSKCC	GRCh37	4	55593482	55593482	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	37	356	0	ENST00000288135.5:c.1639T>A	p.Tyr547Asn	p.Y547N	ENST00000288135	NM_000222.2	547	Tat/Aat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581360	48581360	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	29	228	0	ENST00000342988.3:c.664A>T	p.Thr222Ser	p.T222S	ENST00000342988	NM_005359.5	222	Aca/Tca																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	79	340	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs879253911		P-0006596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	83	356	0	ENST00000269305.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000269305	NM_001126112.2	180	Gag/Aag																																																																															
TP63	8626	MSKCC	GRCh37	3	189590648	189590648	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	17	369	0	ENST00000264731.3:c.1213G>A	p.Val405Met	p.V405M	ENST00000264731	NM_003722.4	405	Gtg/Atg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163438	47163441	+	frameshift_variant	Frame_Shift_Del	DEL	AGTT	AGTT	-			P-0006596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	48	372	0	ENST00000409792.3:c.2685_2688del	p.Thr896SerfsTer2	p.T896Sfs*2	ENST00000409792	NM_014159.6	895	ctAACT/ct																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163008	47163009	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CGAATAATCTTCA			P-0006596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	21	425	0	ENST00000409792.3:c.3117_3118insTGAAGATTATTCG	p.Gly1040Ter	p.G1040*	ENST00000409792	NM_014159.6	1039	-/TGAAGATTATTCG																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115457	115115458	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	48	482	0	ENST00000257566.3:c.868dupA	p.Thr290AsnfsTer37	p.T290Nfs*37	ENST00000257566	NM_016569.3	290	acc/aAcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	28	512	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0006607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	22	515	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	128	300	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	150	376	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661705	227661705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	194	399	0	ENST00000305123.5:c.1750G>A	p.Glu584Lys	p.E584K	ENST00000305123	NM_005544.2	584	Gag/Aag																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440882	52440882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	197	437	2	ENST00000460680.1:c.622C>T	p.Arg208Trp	p.R208W	ENST00000460680	NM_004656.3	208	Cgg/Tgg																																																																															
CD274	29126	MSKCC	GRCh37	9	5457087	5457087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	97	312	0	ENST00000381577.3:c.61G>A	p.Val21Ile	p.V21I	ENST00000381577	NM_014143.3	21	Gtc/Atc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740544	58740544	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	444	681	0	ENST00000305921.3:c.1451del	p.Leu484Ter	p.L484*	ENST00000305921	NM_003620.3	483	acT/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0006660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	21	375	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	26	467	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	24	403	2	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0006660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1659	70	710	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936096	178936096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	16	258	0	ENST00000263967.3:c.1638G>T	p.Gln546His	p.Q546H	ENST00000263967	NM_006218.2	546	caG/caT																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696716	47696716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	52	369	0	ENST00000347630.2:c.232G>A	p.Glu78Lys	p.E78K	ENST00000347630	NM_001007230.1	78	Gaa/Aaa																																																																															
CDK8	1024	MSKCC	GRCh37	13	26967582	26967582	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1151	61	505	0	ENST00000381527.3:c.725A>G	p.Lys242Arg	p.K242R	ENST00000381527	NM_001260.1	242	aAa/aGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0006708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	288	513	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	206	435	1	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0006708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	188	440	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139842	55139842	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	267	401	0	ENST00000257290.5:c.1503C>A	p.Cys501Ter	p.C501*	ENST00000257290	NM_006206.4	501	tgC/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112173299	112173299	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0006708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	188	386	2	ENST00000257430.4:c.2008A>T	p.Lys670Ter	p.K670*	ENST00000257430	NM_000038.5	670	Aaa/Taa																																																																															
MLL2	8085	MSKCC	GRCh37	12	49437167	49437167	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	296	511	0	ENST00000301067.7:c.5512G>T	p.Glu1838Ter	p.E1838*	ENST00000301067	NM_003482.3	1838	Gag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42005448	42005448	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	483	803	0	ENST00000219905.7:c.3184G>C	p.Ala1062Pro	p.A1062P	ENST00000219905	NM_001164273.1	1062	Gct/Cct																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152217	11152217	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	196	393	0	ENST00000344626.4:c.4405G>T	p.Val1469Leu	p.V1469L	ENST00000344626	NM_003072.3	1469	Gtg/Ttg																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271151	26271276	+	coding_sequence_variant,3_prime_UTR_variant	In_Frame_Del	DEL	GGCTCTTAAAAGAGCCTTTTTAAGTTGGATAGAATTACTGCCCGGAAACCTCTACGCTCTCTCCCCACGAATGCGGCGAGCGAGCTGAATGTCCTTGGGCATGATAGTCACTCGCTTAGCATGGAT	GGCTCTTAAAAGAGCCTTTTTAAGTTGGATAGAATTACTGCCCGGAAACCTCTACGCTCTCTCCCCACGAATGCGGCGAGCGAGCTGAATGTCCTTGGGCATGATAGTCACTCGCTTAGCATGGAT	-			P-0006708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	374	427	0	ENST00000305910.3:c.337_*51delATCCATGCTAAGCGAGTGACTATCATGCCCAAGGACATTCAGCTCGCTCGCCGCATTCGTGGGGAGAGAGCGTAGAGGTTTCCGGGCAGTAATTCTATCCAACTTAAAAAGGCTCTTTTAAGAGCC		p.*113*	ENST00000305910	NM_003534.2	113																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604824	+	frameshift_variant	Frame_Shift_Del	DEL	ACGAAGTACTTCATACCATGCCGATTGCAGACCCACA	ACGAAGTACTTCATACCATGCCGATTGCAGACCCACA	-			P-0006708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	135	468	0	ENST00000342988.3:c.1612_1648del	p.Glu538LeufsTer2	p.E538Lfs*2	ENST00000342988	NM_005359.5	537	gACGAAGTACTTCATACCATGCCGATTGCAGACCCACAa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0006715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	309	575	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	213	338	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0006715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	291	465	3	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750417	57750417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	261	540	0	ENST00000274289.3:c.2051G>A	p.Cys684Tyr	p.C684Y	ENST00000274289	NM_006622.3	684	tGt/tAt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59763269	59763269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	307	514	0	ENST00000259008.2:c.2833G>A	p.Glu945Lys	p.E945K	ENST00000259008	NM_032043.2	945	Gaa/Aaa																																																																															
MED12	9968	MSKCC	GRCh37	X	70348181	70348181	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	366	315	0	ENST00000374080.3:c.3245C>G	p.Thr1082Ser	p.T1082S	ENST00000374080		1082	aCc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	86	394	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
SDHD	6392	MSKCC	GRCh37	11	111957665	111957665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28937576		P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	131	512	0	ENST00000375549.3:c.34G>A	p.Gly12Ser	p.G12S	ENST00000375549	NM_003002.3	12	Ggt/Agt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056281	27056281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	56	378	0	ENST00000324856.7:c.1277C>T	p.Thr426Ile	p.T426I	ENST00000324856	NM_006015.4	426	aCc/aTc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724433	162724433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	49	388	0	ENST00000367921.3:c.205G>T	p.Asp69Tyr	p.D69Y	ENST00000367921	NM_006182.2	69	Gat/Tat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187525561	187525561	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	44	508	0	ENST00000441802.2:c.10518G>T	p.Lys3506Asn	p.K3506N	ENST00000441802	NM_005245.3	3506	aaG/aaT																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149433699	149433699	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	119	470	0	ENST00000286301.3:c.2852T>C	p.Leu951Pro	p.L951P	ENST00000286301	NM_005211.3	951	cTg/cCg																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26020877	26020877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	208	991	1	ENST00000357647.3:c.160C>T	p.Arg54Cys	p.R54C	ENST00000357647	NM_003529.2	54	Cgt/Tgt																																																																															
HGF	3082	MSKCC	GRCh37	7	81335007	81335007	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	133	368	0	ENST00000222390.5:c.1820C>A	p.Pro607His	p.P607H	ENST00000222390	NM_000601.4	607	cCt/cAt																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346389	152346389	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	122	665	4	ENST00000359321.1:c.181C>A	p.Leu61Ile	p.L61I	ENST00000359321	NM_005431.1	61	Cta/Ata																																																																															
WT1	7490	MSKCC	GRCh37	11	32449578	32449578	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	99	495	0	ENST00000332351.3:c.796C>G	p.Pro266Ala	p.P266A	ENST00000332351	NM_024426.4	266	Ccg/Gcg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26971288	26971288	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	71	362	0	ENST00000381527.3:c.861-2A>C		p.X287_splice	ENST00000381527	NM_001260.1	287																																																																																
NF1	4763	MSKCC	GRCh37	17	29586147	29586147	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	54	267	0	ENST00000358273.4:c.4430G>C	p.Arg1477Thr	p.R1477T	ENST00000358273	NM_001042492.2	1477	aGg/aCg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561000	9561000	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	50	385	0	ENST00000353224.5:c.782T>A	p.Leu261Gln	p.L261Q	ENST00000353224	NM_177990.2	261	cTg/cAg																																																																															
ARAF	369	MSKCC	GRCh37	X	47422721	47422721	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	96	435	0	ENST00000377045.4:c.193A>G	p.Ile65Val	p.I65V	ENST00000377045	NM_001654.4	65	Atc/Gtc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346863	73346864	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	174	328	0	ENST00000377767.4:c.1353dup	p.Leu452SerfsTer10	p.L452Sfs*10	ENST00000377767	NM_014953.3	451	-/T																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0006735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	325	392	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0006735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	173	617	2	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	338	475	0	ENST00000369535.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000369535	NM_002524.4	13	Ggt/Tgt																																																																															
MYC	4609	MSKCC	GRCh37	8	128751020	128751020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1580	134	323	0	ENST00000377970.2:c.557G>A	p.Cys186Tyr	p.C186Y	ENST00000377970	NM_002467.4	186	tGc/tAc																																																																															
BCL6	604	MSKCC	GRCh37	3	187451432	187451432	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1428	425	522	0	ENST00000232014.4:c.50A>T	p.Asp17Val	p.D17V	ENST00000232014	NM_001130845.1	17	gAt/gTt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2983930	2983930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1365	497	790	0	ENST00000396946.4:c.600C>A	p.Asp200Glu	p.D200E	ENST00000396946	NM_032415.4	200	gaC/gaA																																																																															
MLL2	8085	MSKCC	GRCh37	12	49445007	49445007	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	164	259	0	ENST00000301067.7:c.2459A>C	p.Glu820Ala	p.E820A	ENST00000301067	NM_003482.3	820	gAg/gCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576397	7576978	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTCCAAAAAAAAAAAAAAAAAAAGCAGGCTAGGCTAAGCTATGATGTTCCTTAGATTAGGTGTATTAAATCCATTTTCAACTTACAATATTTTCAACTTACGACGAGTTTATCAGGAAGTAACACCATCGTAAGTCAAGTAGCATCTGTATCAGGCAAAGTCATAGAACCATTTTCATGCTCTCTTTAACAATTTTCTTTTTGAAAGCTGGTCTGGTCCTTTAAAATATATATTATGGTATAAGTTGGTGTTCTGAAGTTAGTTAGCTACAACCAGGAGCCATTGTCTTTGAGGCATCACTGCCCCCTGATGGCAAATGCCCCAATTGCAGGTAAAACAGTCAAGAAGAAAACGGCATTTTGAGTGTTAGACTGGAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCA	CCCGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTCCAAAAAAAAAAAAAAAAAAAGCAGGCTAGGCTAAGCTATGATGTTCCTTAGATTAGGTGTATTAAATCCATTTTCAACTTACAATATTTTCAACTTACGACGAGTTTATCAGGAAGTAACACCATCGTAAGTCAAGTAGCATCTGTATCAGGCAAAGTCATAGAACCATTTTCATGCTCTCTTTAACAATTTTCTTTTTGAAAGCTGGTCTGGTCCTTTAAAATATATATTATGGTATAAGTTGGTGTTCTGAAGTTAGTTAGCTACAACCAGGAGCCATTGTCTTTGAGGCATCACTGCCCCCTGATGGCAAATGCCCCAATTGCAGGTAAAACAGTCAAGAAGAAAACGGCATTTTGAGTGTTAGACTGGAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCA	-			P-0006741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3	106	3	0	ENST00000269305.4:c.919+41_993+456del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
GATA3	2625	MSKCC	GRCh37	10	8115861	8115862	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGAG			P-0006741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1125	450	667	1	ENST00000346208.3:c.1208_1211dup	p.His405GlufsTer103	p.H405Efs*103	ENST00000346208		403	ctg/cTGAGtg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	95	626	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	98	531	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	110	549	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	125	518	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	344	802	1	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46736330	46736330	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	78	543	0	ENST00000371975.4:c.1043-1G>A		p.X348_splice	ENST00000371975	NM_003579.3	348																																																																																
KIT	3815	MSKCC	GRCh37	4	55595638	55595638	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	54	308	0	ENST00000288135.5:c.2128A>G	p.Lys710Glu	p.K710E	ENST00000288135	NM_000222.2	710	Aag/Gag																																																																															
TET2	54790	MSKCC	GRCh37	4	106157772	106157772	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	55	481	0	ENST00000380013.4:c.2673A>C	p.Gln891His	p.Q891H	ENST00000380013	NM_001127208.2	891	caA/caC																																																																															
APC	324	MSKCC	GRCh37	5	112175653	112175653	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	121	709	0	ENST00000257430.4:c.4362A>T	p.Lys1454Asn	p.K1454N	ENST00000257430	NM_000038.5	1454	aaA/aaT																																																																															
APC	324	MSKCC	GRCh37	5	112175657	112175657	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	125	677	0	ENST00000257430.4:c.4366A>T	p.Lys1456Ter	p.K1456*	ENST00000257430	NM_000038.5	1456	Aaa/Taa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206829	162206829	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	63	573	0	ENST00000366898.1:c.846A>C	p.Gln282His	p.Q282H	ENST00000366898	NM_004562.2	282	caA/caC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55233117	55233117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	48	403	0	ENST00000275493.2:c.1867A>C	p.Asn623His	p.N623H	ENST00000275493	NM_005228.3	623	Aac/Cac																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509541	106509541	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	58	601	0	ENST00000359195.3:c.1535A>C	p.Asn512Thr	p.N512T	ENST00000359195	NM_002649.2	512	aAc/aCc																																																																															
FANCC	2176	MSKCC	GRCh37	9	98002947	98002947	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	59	562	0	ENST00000289081.3:c.329T>G	p.Leu110Arg	p.L110R	ENST00000289081	NM_000136.2	110	cTt/cGt																																																																															
CTCF	10664	MSKCC	GRCh37	16	67662360	67662360	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	128	672	0	ENST00000264010.4:c.1606C>T	p.Gln536Ter	p.Q536*	ENST00000264010	NM_006565.3	536	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993740	72993740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	140	744	0	ENST00000268489.5:c.305C>T	p.Ala102Val	p.A102V	ENST00000268489	NM_006885.3	102	gCg/gTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15965076	15965076	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	39	367	0	ENST00000268712.3:c.5520A>C	p.Lys1840Asn	p.K1840N	ENST00000268712	NM_006311.3	1840	aaA/aaC																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881441	37881441	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	79	474	0	ENST00000269571.5:c.2633A>G	p.His878Arg	p.H878R	ENST00000269571		878	cAt/cGt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368305	45368305	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	47	624	0	ENST00000262160.6:c.1297A>C	p.Ser433Arg	p.S433R	ENST00000262160	NM_005901.5	433	Agt/Cgt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349999	15349999	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	54	683	0	ENST00000263377.2:c.3653A>C	p.Lys1218Thr	p.K1218T	ENST00000263377	NM_058243.2	1218	aAg/aCg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45854954	45854954	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	62	598	0	ENST00000391945.4:c.2216T>G	p.Leu739Arg	p.L739R	ENST00000391945	NM_000400.3	739	cTc/cGc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024087	31024087	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	65	581	0	ENST00000375687.4:c.3572T>G	p.Ile1191Ser	p.I1191S	ENST00000375687	NM_015338.5	1191	aTt/aGt																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121333	29121333	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	102	629	0	ENST00000328354.6:c.342G>A	p.Trp114Ter	p.W114*	ENST00000328354	NM_007194.3	114	tgG/tgA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653830	89653830	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	223	488	0	ENST00000371953.3:c.129del	p.Gly44AlafsTer10	p.G44Afs*10	ENST00000371953	NM_000314.4	43	gAa/ga																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836302	89836319	+	inframe_deletion	In_Frame_Del	DEL	GCAGGGACAGGAAGGCCA	GCAGGGACAGGAAGGCCA	-			P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	114	843	0	ENST00000389301.3:c.2430_2447del	p.Gly811_Ala816del	p.G811_A816del	ENST00000389301	NM_000135.2	810	gcTGGCCTTCCTGTCCCTGCg/gcg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969422	44969426	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGG	CTTGG	-			P-0006758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	177	450	0	ENST00000377967.4:c.4104_4108del	p.Asn1368LysfsTer19	p.N1368Kfs*19	ENST00000377967	NM_021140.2	1368	aaCTTGGaa/aaaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0006761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	111	759	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372127	55372127	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	17	209	0	ENST00000297316.4:c.817C>T	p.Arg273Ter	p.R273*	ENST00000297316	NM_022454.3	273	Cga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851684	134851684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	64	550	0	ENST00000398015.3:c.1090C>T	p.Arg364Trp	p.R364W	ENST00000398015	NM_004441.4	364	Cgg/Tgg																																																																															
MLL3	58508	MSKCC	GRCh37	7	151949106	151949106	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	44	600	0	ENST00000262189.6:c.1539C>G	p.Ile513Met	p.I513M	ENST00000262189	NM_170606.2	513	atC/atG																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741636	17741636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	40	286	0	ENST00000250003.3:c.307C>T	p.Arg103Cys	p.R103C	ENST00000250003	NM_002478.4	103	Cgc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42005434	42005434	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	186	1049	0	ENST00000219905.7:c.3170T>A	p.Val1057Glu	p.V1057E	ENST00000219905	NM_001164273.1	1057	gTa/gAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992422	72992422	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1276	101	1123	0	ENST00000268489.5:c.1623G>C	p.Gln541His	p.Q541H	ENST00000268489	NM_006885.3	541	caG/caC																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905617	50905617	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1182	103	802	0	ENST00000440232.2:c.745G>T	p.Asp249Tyr	p.D249Y	ENST00000440232	NM_002691.3	249	Gac/Tac																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175217	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0006761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	28	332	0	ENST00000257430.4:c.3925_3926del	p.Glu1309LysfsTer5	p.E1309Kfs*5	ENST00000257430	NM_000038.5	1309	GAa/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0006768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	607	792	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46531749	46531749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1724	157	533	1	ENST00000262741.5:c.598G>A	p.Glu200Lys	p.E200K	ENST00000262741	NM_003629.3	200	Gaa/Aaa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420318	88420318	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	122	336	0	ENST00000360948.2:c.2368G>C	p.Glu790Gln	p.E790Q	ENST00000360948	NM_001012338.2	790	Gag/Cag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819237	3819237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1555	91	681	0	ENST00000262367.5:c.2998G>A	p.Glu1000Lys	p.E1000K	ENST00000262367	NM_004380.2	1000	Gag/Aag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923647	72923647	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1425	508	805	0	ENST00000268489.5:c.3431G>T	p.Cys1144Phe	p.C1144F	ENST00000268489	NM_006885.3	1144	tGc/tTc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59853923	59853923	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	167	512	0	ENST00000259008.2:c.1936G>T	p.Val646Phe	p.V646F	ENST00000259008	NM_032043.2	646	Gtt/Ttt																																																																															
STK11	6794	MSKCC	GRCh37	19	1226627	1226627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	65	397	0	ENST00000326873.7:c.1283C>T	p.Ser428Leu	p.S428L	ENST00000326873	NM_000455.4	428	tCg/tTg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561234	9561234	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1228	101	551	0	ENST00000353224.5:c.548C>G	p.Ser183Cys	p.S183C	ENST00000353224	NM_177990.2	183	tCt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	33	510	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	33	577	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
TET1	80312	MSKCC	GRCh37	10	70451486	70451486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	40	673	0	ENST00000373644.4:c.6326C>T	p.Ala2109Val	p.A2109V	ENST00000373644	NM_030625.2	2109	gCa/gTa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	75	716	0	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																															
ARAF	369	MSKCC	GRCh37	X	47428131	47428132	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAACATC			P-0006794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	50	539	0	ENST00000377045.4:c.1092_1098dup	p.Leu367GlnfsTer22	p.L367Qfs*22	ENST00000377045	NM_001654.4	364	gtc/gtCAACATCc																																																																															
APC	324	MSKCC	GRCh37	5	112175596	112175597	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0006794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	35	694	0	ENST00000257430.4:c.4306_4307dup	p.Ser1436ArgfsTer38	p.S1436Rfs*38	ENST00000257430	NM_000038.5	1435	-/AG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006806-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	369	290	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56774148	56774148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006806-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	179	519	1	ENST00000337432.4:c.499G>A	p.Asp167Asn	p.D167N	ENST00000337432	NM_058216.2	167	Gat/Aat																																																																															
CDK8	1024	MSKCC	GRCh37	13	26975471	26975472	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0006806-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	232	238	1	ENST00000381527.3:c.1098_1099del	p.Asp366GlufsTer14	p.D366Efs*14	ENST00000381527	NM_001260.1	366	gAC/g																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097609	27097609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	98	346	0	ENST00000324856.7:c.3199-1G>A		p.X1067_splice	ENST00000324856	NM_006015.4	1067																																																																																
ERCC3	2071	MSKCC	GRCh37	2	128050416	128050416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	46	307	1	ENST00000285398.2:c.241G>A	p.Asp81Asn	p.D81N	ENST00000285398	NM_000122.1	81	Gat/Aat																																																																															
SETD2	29072	MSKCC	GRCh37	3	47142975	47142975	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	63	352	0	ENST00000409792.3:c.4988C>G	p.Thr1663Arg	p.T1663R	ENST00000409792	NM_014159.6	1663	aCg/aGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921555	+	missense_variant	Missense_Mutation	ONP	TGT	TGT	AGG			P-0006816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	63	243	0	ENST00000263967.3:c.1035_1037delinsAGG	p.Asn345_Val346delinsLysGly	p.N345_V346delinsKG	ENST00000263967	NM_006218.2	345	aaTGTa/aaAGGa																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0006816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	47	338	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0006816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	89	221	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371807	55371807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	17	36	0	ENST00000297316.4:c.497C>T	p.Ala166Val	p.A166V	ENST00000297316	NM_022454.3	166	gCg/gTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903772	114903772	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	285	574	0	ENST00000543371.1:c.776G>A	p.Trp259Ter	p.W259*	ENST00000543371	NM_001198531.1	259	tGg/tAg																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872041	35872041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	195	605	1	ENST00000216797.5:c.572C>T	p.Ser191Phe	p.S191F	ENST00000216797	NM_020529.2	191	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0006816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	277	468	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42791995	42791995	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1082	103	432	0	ENST00000575354.2:c.799T>G	p.Trp267Gly	p.W267G	ENST00000575354	NM_015125.3	267	Tgg/Ggg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44950057	44950057	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	54	559	1	ENST00000377967.4:c.3826A>T	p.Asn1276Tyr	p.N1276Y	ENST00000377967	NM_021140.2	1276	Aat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0006822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	442	442	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098913	47098913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	128	334	0	ENST00000409792.3:c.6361C>T	p.Arg2121Cys	p.R2121C	ENST00000409792	NM_014159.6	2121	Cgc/Tgc																																																																															
MITF	4286	MSKCC	GRCh37	3	69928398	69928398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	164	326	0	ENST00000352241.4:c.218G>A	p.Arg73His	p.R73H	ENST00000352241	NM_198159.2	73	cGc/cAc																																																																															
TP63	8626	MSKCC	GRCh37	3	189526226	189526226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1149	242	400	1	ENST00000264731.3:c.490G>A	p.Ala164Thr	p.A164T	ENST00000264731	NM_003722.4	164	Gcc/Acc																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158663	26158663	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	10	23	0	ENST00000289316.2:c.266C>G	p.Thr89Ser	p.T89S	ENST00000289316	NM_138720.2	89	aCc/aGc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348504	89348504	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	347	618	0	ENST00000301030.4:c.4446T>A	p.Asp1482Glu	p.D1482E	ENST00000301030	NM_001256183.1	1482	gaT/gaA																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	CC			P-0006822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	288	277	0	ENST00000257430.4:c.3964delinsCC	p.Glu1322ProfsTer10	p.E1322Pfs*10	ENST00000257430	NM_000038.5	1322	Gaa/CCaa																																																																															
AKT1	207	MSKCC	GRCh37	14	105239419	105239419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	221	324	0	ENST00000349310.3:c.968A>G	p.Asp323Gly	p.D323G	ENST00000349310	NM_001014432.1	323	gAc/gGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	1208	465	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KDR	3791	MSKCC	GRCh37	4	55948705	55948705	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0006842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	249	291	2	ENST00000263923.4:c.3760G>C	p.Asp1254His	p.D1254H	ENST00000263923	NM_002253.2	1254	Gat/Cat																																																																															
MYC	4609	MSKCC	GRCh37	8	128752670	128752670	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2767	193	436	0	ENST00000377970.2:c.831C>G	p.Ile277Met	p.I277M	ENST00000377970	NM_002467.4	277	atC/atG																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18277079	18277079	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2226	249	549	0	ENST00000222254.8:c.1526T>A	p.Phe509Tyr	p.F509Y	ENST00000222254	NM_005027.3	509	tTc/tAc																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945240	54945240	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1097	148	319	0	ENST00000312783.6:c.1186A>G	p.Lys396Glu	p.K396E	ENST00000312783	NM_198436.1	396	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579425	7579426	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	382	432	0	ENST00000269305.4:c.261dup	p.Ala88SerfsTer61	p.A88Sfs*61	ENST00000269305	NM_001126112.2	87	-/A																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	226	447	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884858	134884858	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	75	521	0	ENST00000398015.3:c.1634C>G	p.Ser545Trp	p.S545W	ENST00000398015	NM_004441.4	545	tCg/tGg																																																																															
ATR	545	MSKCC	GRCh37	3	142232344	142232344	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0006855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	88	382	1	ENST00000350721.4:c.4640A>T	p.Glu1547Val	p.E1547V	ENST00000350721	NM_001184.3	1547	gAg/gTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220707	1220707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	155	421	1	ENST00000326873.7:c.725G>T	p.Gly242Val	p.G242V	ENST00000326873	NM_000455.4	242	gGg/gTg																																																																															
MAX	4149	MSKCC	GRCh37	14	65560503	65560503	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	212	525	1	ENST00000358664.4:c.94del	p.Glu32AsnfsTer33	p.E32Nfs*33	ENST00000358664	NM_002382.4	32	Gaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0006865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	150	232	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578513	7578549	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGG	CTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGG	-			P-0006865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	46	379	0	ENST00000269305.4:c.381_417del	p.Asn131CysfsTer27	p.N131Cfs*27	ENST00000269305	NM_001126112.2	127	tcCCCTGCCCTCAACAAGATGTTTTGCCAACTGGCCAAG/tc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	158	218	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0006872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	289	374	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0006872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	258	294	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	151	196	1	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912173	114912173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1379	469	590	1	ENST00000543371.1:c.1243C>T	p.Pro415Ser	p.P415S	ENST00000543371	NM_001198531.1	415	Ccc/Tcc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28891674	28891674	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1763	115	479	0	ENST00000282397.4:c.3347G>C	p.Gly1116Ala	p.G1116A	ENST00000282397	NM_002019.4	1116	gGc/gCc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	338	339	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	233	380	1	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	378	656	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174868	112174868	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	118	430	1	ENST00000257430.4:c.3577C>T	p.Gln1193Ter	p.Q1193*	ENST00000257430	NM_000038.5	1193	Cag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141507	11141507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	340	562	0	ENST00000344626.4:c.3484G>A	p.Gly1162Ser	p.G1162S	ENST00000344626	NM_003072.3	1162	Ggc/Agc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270144	66270144	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	189	513	0	ENST00000273854.3:c.1738A>G	p.Thr580Ala	p.T580A	ENST00000273854	NM_004439.5	580	Aca/Gca																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576093	88576093	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	460	507	0	ENST00000360948.2:c.1580A>G	p.Asp527Gly	p.D527G	ENST00000360948	NM_001012338.2	527	gAc/gGc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264341	30264341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	32	133	0	ENST00000322652.5:c.76G>A	p.Gly26Arg	p.G26R	ENST00000322652	NM_015355.2	26	Ggg/Agg																																																																															
SRC	6714	MSKCC	GRCh37	20	36012656	36012656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	149	163	0	ENST00000358208.4:c.100G>A	p.Ala34Thr	p.A34T	ENST00000358208		34	Gcc/Acc																																																																															
XIAP	331	MSKCC	GRCh37	X	123040919	123040919	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	66	274	0	ENST00000355640.3:c.1382T>C	p.Val461Ala	p.V461A	ENST00000355640		461	gTt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112176027	112176028	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	75	388	0	ENST00000257430.4:c.4738_4739dup	p.Ser1581PhefsTer70	p.S1581Ffs*70	ENST00000257430	NM_000038.5	1579	att/atTAt																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778072	27778089	+	inframe_deletion	In_Frame_Del	DEL	AGATCGCGCAGGACTTCA	AGATCGCGCAGGACTTCA	-			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	517	1132	0	ENST00000369163.2:c.224_241del	p.Ile75_Lys80del	p.I75_K80del	ENST00000369163	NM_003536.2	74	gAGATCGCGCAGGACTTCAag/gag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88670432	88670434	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	503	525	1	ENST00000360948.2:c.1252_1254del	p.Pro418del	p.P418del	ENST00000360948	NM_001012338.2	418	CCT/-																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139566541	139566715	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	GTGAGTGCCCCCACCCTCCAGAGCCCTCCTCCCGGGTCTGGGCCCAGTGGGCCTAGAGGGGCTACCCAGGCTTGGGGGTCGGGGGCGACCAAAGGCCAAGGGGCCAGTCAGATCTAGCTGGGCGGGGAGGCTGTGGGGAGCAGTGATCTCTGACCTTCGCCTCATCCAACCCTAG	GTGAGTGCCCCCACCCTCCAGAGCCCTCCTCCCGGGTCTGGGCCCAGTGGGCCTAGAGGGGCTACCCAGGCTTGGGGGTCGGGGGCGACCAAAGGCCAAGGGGCCAGTCAGATCTAGCTGGGCGGGGAGGCTGTGGGGAGCAGTGATCTCTGACCTTCGCCTCATCCAACCCTAG	-			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	91	423	0	ENST00000308874.7:c.799+2_800del		p.X267_splice	ENST00000308874		267																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006936-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	47	465	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0006936-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	78	616	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
STAG2	10735	MSKCC	GRCh37	X	123205060	123205060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006936-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	86	347	0	ENST00000218089.9:c.2420G>A	p.Arg807His	p.R807H	ENST00000218089	NM_001042749.1	807	cGt/cAt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435202	18435202	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	121	539	2	ENST00000266497.5:c.187T>A	p.Phe63Ile	p.F63I	ENST00000266497		63	Ttt/Att																																																																															
APC	324	MSKCC	GRCh37	5	112177782	112177798	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCACGAATTCTAAAA	GCCCACGAATTCTAAAA	-			P-0007043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	107	354	0	ENST00000257430.4:c.6491_6507del	p.Gly2164AlafsTer10	p.G2164Afs*10	ENST00000257430	NM_000038.5	2164	gGCCCACGAATTCTAAAA/g																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060911	38060912	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0007043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	112	418	0	ENST00000250448.2:c.1076_1077dup	p.Ile360ProfsTer2	p.I360Pfs*2	ENST00000250448	NM_004496.3	359	-/CC																																																																															
XPO1	7514	MSKCC	GRCh37	2	61721063	61721063	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007101-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			368	121	401	0	ENST00000401558.2:c.1211C>G	p.Pro404Arg	p.P404R	ENST00000401558	NM_003400.3	404	cCc/cGc																																																																															
IRF4	3662	MSKCC	GRCh37	6	401636	401636	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007101-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			244	322	328	1	ENST00000380956.4:c.958G>T	p.Ala320Ser	p.A320S	ENST00000380956	NM_001195286.1	320	Gcc/Tcc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190398	32190398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007101-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			281	336	393	1	ENST00000375023.3:c.341G>T	p.Cys114Phe	p.C114F	ENST00000375023	NM_004557.3	114	tGc/tTc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005551	150005551	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007101-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			230	155	403	0	ENST00000253339.5:c.674A>T	p.Gln225Leu	p.Q225L	ENST00000253339		225	cAa/cTa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508623	106508623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007101-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			293	54	245	0	ENST00000359195.3:c.617C>A	p.Pro206His	p.P206H	ENST00000359195	NM_002649.2	206	cCc/cAc																																																																															
MLL3	58508	MSKCC	GRCh37	7	151877898	151877898	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007101-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			350	74	259	0	ENST00000262189.6:c.7047C>G	p.Phe2349Leu	p.F2349L	ENST00000262189	NM_170606.2	2349	ttC/ttG																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341196	8341196	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs138775068		P-0007101-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			337	144	420	0	ENST00000356435.5:c.5020C>A	p.Arg1674Ser	p.R1674S	ENST00000356435		1674	Cgc/Agc																																																																															
MLL	4297	MSKCC	GRCh37	11	118376769	118376769	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007101-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			171	176	295	1	ENST00000534358.1:c.10162G>T	p.Ala3388Ser	p.A3388S	ENST00000534358	NM_005933.3	3388	Gct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007101-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			380	343	385	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007101-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			198	175	384	0	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207144	1207144	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007101-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			284	236	482	0	ENST00000326873.7:c.232A>T	p.Lys78Ter	p.K78*	ENST00000326873	NM_000455.4	78	Aag/Tag																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621854	1621854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007101-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			121	98	444	0	ENST00000344749.5:c.938G>T	p.Gly313Val	p.G313V	ENST00000344749	NM_001136139.2	313	gGg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0007108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	283	537	2	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267290	41267290	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	286	410	0	ENST00000349496.5:c.874A>G	p.Lys292Glu	p.K292E	ENST00000349496	NM_001904.3	292	Aaa/Gaa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38287349	38287349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	96	436	1	ENST00000425967.3:c.308G>T	p.Gly103Val	p.G103V	ENST00000425967	NM_001174067.1	103	gGg/gTg																																																																															
ABL1	25	MSKCC	GRCh37	9	133760438	133760438	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	219	393	0	ENST00000318560.5:c.2761G>T	p.Glu921Ter	p.E921*	ENST00000318560	NM_005157.4	921	Gag/Tag																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945028	31945028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	295	510	0	ENST00000340398.3:c.73G>T	p.Ala25Ser	p.A25S	ENST00000340398	NM_001013699.2	25	Gct/Tct																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779578	3779578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	300	587	0	ENST00000262367.5:c.5470G>A	p.Ala1824Thr	p.A1824T	ENST00000262367	NM_004380.2	1824	Gcc/Acc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11958295	11958295	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	116	172	0	ENST00000353533.5:c.205C>T	p.Gln69Ter	p.Q69*	ENST00000353533	NM_003010.3	69	Caa/Taa																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0007114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	146	382	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0007114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	140	360	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539765	187539765	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	97	475	0	ENST00000441802.2:c.7975G>T	p.Glu2659Ter	p.E2659*	ENST00000441802	NM_005245.3	2659	Gag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911973	32911973	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1104	304	794	0	ENST00000380152.3:c.3481G>T	p.Asp1161Tyr	p.D1161Y	ENST00000380152		1161	Gat/Tat																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134379	41134379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1288	299	763	0	ENST00000379561.5:c.1249C>T	p.Pro417Ser	p.P417S	ENST00000379561	NM_002015.3	417	Ccc/Tcc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23637606	23637606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	90	520	1	ENST00000261584.4:c.2699C>T	p.Ala900Val	p.A900V	ENST00000261584	NM_024675.3	900	gCt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220434	1220434	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	199	511	0	ENST00000326873.7:c.527A>G	p.Asp176Gly	p.D176G	ENST00000326873	NM_000455.4	176	gAc/gGc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600323	10600323	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0007114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	172	398	0	ENST00000171111.5:c.1531+1G>T		p.X511_splice	ENST00000171111	NM_203500.1	511																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11144182	11144182	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	129	335	0	ENST00000344626.4:c.3763G>T	p.Glu1255Ter	p.E1255*	ENST00000344626	NM_003072.3	1255	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	62	309	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782177		P-0007121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	74	533	1	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																															
ACVR1	90	MSKCC	GRCh37	2	158594123	158594123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1455	111	667	1	ENST00000263640.3:c.1450G>T	p.Ala484Ser	p.A484S	ENST00000263640	NM_001105.4	484	Gca/Tca																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522532	157522532	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	55	606	0	ENST00000346085.5:c.4804A>G	p.Ile1602Val	p.I1602V	ENST00000346085	NM_020732.3	1602	Atc/Gtc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467821	50467821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	34	318	0	ENST00000331340.3:c.1056G>T	p.Lys352Asn	p.K352N	ENST00000331340	NM_006060.4	352	aaG/aaT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526687	106526687	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	49	342	0	ENST00000359195.3:c.2980G>T	p.Val994Leu	p.V994L	ENST00000359195	NM_002649.2	994	Gtg/Ttg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602715	10602715	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	44	472	1	ENST00000171111.5:c.863G>T	p.Cys288Phe	p.C288F	ENST00000171111	NM_203500.1	288	tGc/tTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152006	11152018	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGATCGAAGAG	GGAGATCGAAGAG	-			P-0007121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	39	332	0	ENST00000344626.4:c.4195_4207del	p.Glu1399ArgfsTer60	p.E1399Rfs*60	ENST00000344626	NM_003072.3	1398	gaGGAGATCGAAGAG/ga																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	19	392	1	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																															
TET1	80312	MSKCC	GRCh37	10	70432756	70432756	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	38	547	0	ENST00000373644.4:c.4778G>C	p.Ser1593Thr	p.S1593T	ENST00000373644	NM_030625.2	1593	aGc/aCc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	156	301	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	378	332	0	ENST00000269305.4:c.535C>G	p.His179Asp	p.H179D	ENST00000269305	NM_001126112.2	179	Cat/Gat																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0007140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	340	435	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	368	316	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166200	32166200	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0007140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1222	96	397	1	ENST00000375023.3:c.4754C>A	p.Pro1585His	p.P1585H	ENST00000375023	NM_004557.3	1585	cCt/cAt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157454306	157454306	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141030037		P-0007140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	90	292	0	ENST00000346085.5:c.2516C>T	p.Thr839Ile	p.T839I	ENST00000346085	NM_020732.3	839	aCt/aTt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435656	18435656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	57	260	0	ENST00000266497.5:c.641C>T	p.Pro214Leu	p.P214L	ENST00000266497		214	cCc/cTc																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66519865	66519865	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0007140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	53	261	0	ENST00000358598.2:c.349-1G>T		p.X117_splice	ENST00000358598	NM_212471.2	117																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48591808	48591808	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	182	318	0	ENST00000342988.3:c.971G>T	p.Cys324Phe	p.C324F	ENST00000342988	NM_005359.5	324	tGt/tTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593466	48593466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	78	372	0	ENST00000342988.3:c.1217C>T	p.Ala406Val	p.A406V	ENST00000342988	NM_005359.5	406	gCg/gTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	216	332	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	296	514	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367257	50367257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	129	317	1	ENST00000331340.3:c.64G>A	p.Asp22Asn	p.D22N	ENST00000331340	NM_006060.4	22	Gat/Aat																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52597394	52597394	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	233	566	0	ENST00000394830.3:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000394830	NM_018313.4	1306	Gaa/Taa																																																																															
ATR	545	MSKCC	GRCh37	3	142168429	142168429	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	100	309	0	ENST00000350721.4:c.7777C>A	p.Leu2593Ile	p.L2593I	ENST00000350721	NM_001184.3	2593	Ctt/Att																																																																															
APC	324	MSKCC	GRCh37	5	112174602	112174602	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	298	574	0	ENST00000257430.4:c.3311C>A	p.Ser1104Ter	p.S1104*	ENST00000257430	NM_000038.5	1104	tCa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112175642	112175642	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1110	350	576	0	ENST00000257430.4:c.4351G>T	p.Glu1451Ter	p.E1451*	ENST00000257430	NM_000038.5	1451	Gaa/Taa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117866644	117866644	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1767	383	757	1	ENST00000297338.2:c.1001G>T	p.Ser334Ile	p.S334I	ENST00000297338	NM_006265.2	334	aGc/aTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653829	89653829	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	131	379	0	ENST00000371953.3:c.127G>T	p.Glu43Ter	p.E43*	ENST00000371953	NM_000314.4	43	Gaa/Taa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1177	346	598	1	ENST00000543371.1:c.1411C>A	p.Arg471Ser	p.R471S	ENST00000543371	NM_001198531.1	471	Cgc/Agc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	404891	404891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	197	456	1	ENST00000399788.2:c.4303C>A	p.Leu1435Met	p.L1435M	ENST00000399788	NM_001042603.1	1435	Ctg/Atg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81941323	81941323	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	233	585	1	ENST00000359376.3:c.1501G>T	p.Ala501Ser	p.A501S	ENST00000359376	NM_002661.3	501	Gcc/Tcc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032531	12032531	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	38	264	0	ENST00000353533.5:c.967G>T	p.Gly323Ter	p.G323*	ENST00000353533	NM_003010.3	323	Gga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37882034	37882034	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	171	454	3	ENST00000269571.5:c.2800C>A	p.Leu934Met	p.L934M	ENST00000269571		934	Ctg/Atg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368287	45368287	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	55	514	0	ENST00000262160.6:c.1315G>T	p.Glu439Ter	p.E439*	ENST00000262160	NM_005901.5	439	Gaa/Taa																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271359	18271359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	217	357	1	ENST00000222254.8:c.401C>T	p.Ala134Val	p.A134V	ENST00000222254	NM_005027.3	134	gCc/gTc																																																																															
AXL	558	MSKCC	GRCh37	19	41763458	41763458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	345	666	0	ENST00000301178.4:c.2257G>A	p.Val753Met	p.V753M	ENST00000301178	NM_021913.4	753	Gtg/Atg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412596	63412596	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	223	214	0	ENST00000330258.3:c.571G>T	p.Glu191Ter	p.E191*	ENST00000330258	NM_152424.3	191	Gag/Tag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53250082	53250085	+	frameshift_variant	Frame_Shift_Del	DEL	AAGG	AAGG	-			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	326	290	2	ENST00000375401.3:c.164_167del	p.Pro55LeufsTer17	p.P55Lfs*17	ENST00000375401	NM_004187.3	55	cCCTTt/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0007167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	263	576	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0007167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	382	525	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	121	260	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0007167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	120	510	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
MDM4	4194	MSKCC	GRCh37	1	204507421	204507421	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1044	132	539	0	ENST00000367182.3:c.496A>T	p.Ile166Leu	p.I166L	ENST00000367182	NM_001278516.1	166	Ata/Tta																																																																															
BCL6	604	MSKCC	GRCh37	3	187447260	187447260	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	277	416	0	ENST00000232014.4:c.933G>C	p.Glu311Asp	p.E311D	ENST00000232014	NM_001130845.1	311	gaG/gaC																																																																															
NSD1	64324	MSKCC	GRCh37	5	176666819	176666819	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	108	511	0	ENST00000439151.2:c.4255G>C	p.Asp1419His	p.D1419H	ENST00000439151	NM_022455.4	1419	Gac/Cac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341876	8341876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	111	569	0	ENST00000356435.5:c.4764G>A	p.Met1588Ile	p.M1588I	ENST00000356435		1588	atG/atA																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233093	69233093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	132	431	0	ENST00000462284.1:c.958C>G	p.Pro320Ala	p.P320A	ENST00000462284	NM_002392.5	320	Ccc/Gcc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28597507	28597507	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	153	513	0	ENST00000241453.7:c.2398G>C	p.Glu800Gln	p.E800Q	ENST00000241453	NM_004119.2	800	Gaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0007177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	105	382	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226252170	226252170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	14	50	0	ENST00000366813.1:c.118C>A	p.His40Asn	p.H40N	ENST00000366813		40	Cat/Aat																																																																															
AXL	558	MSKCC	GRCh37	19	41743949	41743949	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199988157		P-0007177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	129	395	0	ENST00000301178.4:c.884G>A	p.Arg295Gln	p.R295Q	ENST00000301178	NM_021913.4	295	cGg/cAg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265722	41266253	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTA	TTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTA	-			P-0007177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	55	40	0	ENST00000349496.5:c.13+152_241+11del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
PPP6C	5537	MSKCC	GRCh37	9	127916226	127916226	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	164	447	0	ENST00000373547.4:c.418del	p.Arg140AspfsTer12	p.R140Dfs*12	ENST00000373547	NM_002721.4	140	Aga/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1386	186	381	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SYK	6850	MSKCC	GRCh37	9	93637070	93637070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1837	209	483	0	ENST00000375746.1:c.1120G>A	p.Asp374Asn	p.D374N	ENST00000375746	NM_001174167.1	374	Gac/Aac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034471	47034471	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1646	256	615	0	ENST00000329236.7:c.325C>T	p.Arg109Ter	p.R109*	ENST00000329236	NM_001204466.1	109	Cga/Tga																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0007231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	353	295	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	238	323	1	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161254	56161254	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	216	329	0	ENST00000399503.3:c.1123T>G	p.Leu375Val	p.L375V	ENST00000399503	NM_005921.1	375	Tta/Gta																																																																															
ATR	545	MSKCC	GRCh37	3	142253986	142254009	+	inframe_deletion	In_Frame_Del	DEL	TGTTGAATGGCCTTCATAGAGAGC	TGTTGAATGGCCTTCATAGAGAGC	-			P-0007231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	212	415	0	ENST00000350721.4:c.3858_3881del	p.Gln1286_Gln1293del	p.Q1286_Q1293del	ENST00000350721	NM_001184.3	1286	caGCTCTCTATGAAGGCCATTCAACAt/cat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178385	56178397	+	frameshift_variant	Frame_Shift_Del	DEL	TGCAGATTAGATG	TGCAGATTAGATG	-			P-0007231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	223	467	0	ENST00000399503.3:c.3359_3371del	p.Cys1120SerfsTer24	p.C1120Sfs*24	ENST00000399503	NM_005921.1	1120	TGCAGATTAGATGtc/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	80	310	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MED12	9968	MSKCC	GRCh37	X	70338696	70338698	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0007241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	75	209	0	ENST00000374080.3:c.94_96del	p.Lys32del	p.K32del	ENST00000374080		31	cAGAag/cag																																																																															
MLL3	58508	MSKCC	GRCh37	7	151853105	151853105	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	43	218	0	ENST00000262189.6:c.11850del	p.Phe3951SerfsTer36	p.F3951Sfs*36	ENST00000262189	NM_170606.2	3950	ccC/cc																																																																															
MLL	4297	MSKCC	GRCh37	11	118375894	118375895	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0007284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	177	410	0	ENST00000534358.1:c.9289_9290del	p.Leu3097SerfsTer15	p.L3097Sfs*15	ENST00000534358	NM_005933.3	3096	aCT/a																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217431	7217432	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0007284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	436	729	0	ENST00000380728.2:c.364_365del	p.Val122SerfsTer26	p.V122Sfs*26	ENST00000380728		122	GTt/t																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	43	344	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0007302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	33	318	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52595908	52595908	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	39	509	0	ENST00000394830.3:c.4007del	p.Leu1336ArgfsTer6	p.L1336Rfs*6	ENST00000394830	NM_018313.4	1336	cTg/cg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0007322-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1220	54	504	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	61	291	0	ENST00000269305.4:c.770T>G	p.Leu257Arg	p.L257R	ENST00000269305	NM_001126112.2	257	cTg/cGg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023676	27023676	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	38	338	0	ENST00000324856.7:c.782C>A	p.Ser261Ter	p.S261*	ENST00000324856	NM_006015.4	261	tCg/tAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153253868	153253868	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	33	209	1	ENST00000281708.4:c.865G>C	p.Ala289Pro	p.A289P	ENST00000281708	NM_033632.3	289	Gca/Cca																																																																															
CDH1	999	MSKCC	GRCh37	16	68771333	68771333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	76	217	0	ENST00000261769.5:c.15C>A	p.Ser5Arg	p.S5R	ENST00000261769	NM_004360.3	5	agC/agA																																																																															
TP53	7157	MSKCC	GRCh37	17	7579370	7579370	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	116	390	0	ENST00000269305.4:c.317del	p.Ser106ThrfsTer17	p.S106Tfs*17	ENST00000269305	NM_001126112.2	106	aGc/ac																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573828	64573955	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGAGGCAATGCCCTGGATGGAGGTGAGGCAGAGGATCCTCAGGGAGGCAGCCCCAGCTGCCCTGCTGGCACAAATGCCCCACCAGGGCACACCCAGAAGGGGCCACAGGAAGATCCCAGGGAGTCCT	CTGAGGCAATGCCCTGGATGGAGGTGAGGCAGAGGATCCTCAGGGAGGCAGCCCCAGCTGCCCTGCTGGCACAAATGCCCCACCAGGGCACACCCAGAAGGGGCCACAGGAAGATCCCAGGGAGTCCT	-			P-0007355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	230	265	0	ENST00000337652.1:c.928-115_940del		p.X310_splice	ENST00000337652	NM_130803.2	310																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0007362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	77	217	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	400	574	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435300	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-	rs765493638		P-0007362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	10	80	0	ENST00000375856.3:c.3099_3101del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1033	ccACCg/ccg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115750	8115750	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	309	619	1	ENST00000346208.3:c.1096C>T	p.Arg366Ter	p.R366*	ENST00000346208		366	Cga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120671	115120671	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	261	541	0	ENST00000257566.3:c.335T>G	p.Leu112Arg	p.L112R	ENST00000257566	NM_016569.3	112	cTt/cGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114263	115114264	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTGAGCT			P-0007362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	175	301	0	ENST00000257566.3:c.947_953dup	p.Leu319AlafsTer10	p.L319Afs*10	ENST00000257566	NM_016569.3	318	acc/acAGCTCACc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177662	56177662	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	399	369	0	ENST00000399503.3:c.2636del	p.Gly879ValfsTer30	p.G879Vfs*30	ENST00000399503	NM_005921.1	879	Ggt/gt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115965	8115968	+	frameshift_variant	Frame_Shift_Del	DEL	CATG	CATG	ATT			P-0007362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	53	144	0	ENST00000346208.3:c.1311_1314delinsATT	p.Ser437ArgfsTer38	p.S437Rfs*38	ENST00000346208		437	agCATG/agATT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0007389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	55	261	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0007389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	112	282	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	55	242	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	62	211	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449779	149449779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	38	222	1	ENST00000286301.3:c.1285G>A	p.Val429Met	p.V429M	ENST00000286301	NM_005211.3	429	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0007403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	107	222	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
EPHA7	2045	MSKCC	GRCh37	6	94120666	94120666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1346	304	680	0	ENST00000369303.4:c.385G>A	p.Glu129Lys	p.E129K	ENST00000369303	NM_004440.3	129	Gaa/Aaa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670425	134670425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	133	263	0	ENST00000398015.3:c.336G>T	p.Leu112Phe	p.L112F	ENST00000398015	NM_004441.4	112	ttG/ttT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630456	187630456	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	168	536	0	ENST00000441802.2:c.526G>T	p.Ala176Ser	p.A176S	ENST00000441802	NM_005245.3	176	Gca/Tca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417398	139417398	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	82	392	0	ENST00000277541.6:c.646G>T	p.Glu216Ter	p.E216*	ENST00000277541	NM_017617.3	216	Gag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097644	8097644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	70	223	0	ENST00000346208.3:c.26G>A	p.Arg9His	p.R9H	ENST00000346208		9	cGc/cAc																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022393	12022393	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	299	596	0	ENST00000396373.4:c.499G>C	p.Asp167His	p.D167H	ENST00000396373	NM_001987.4	167	Gat/Cat																																																																															
RB1	5925	MSKCC	GRCh37	13	49047501	49047501	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0007403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	203	362	0	ENST00000267163.4:c.2495T>A	p.Leu832Ter	p.L832*	ENST00000267163	NM_000321.2	832	tTa/tAa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779094	3779094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	145	258	0	ENST00000262367.5:c.5954G>T	p.Arg1985Leu	p.R1985L	ENST00000262367	NM_004380.2	1985	cGc/cTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220603	1220603	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	110	387	0	ENST00000326873.7:c.621C>G	p.Asp207Glu	p.D207E	ENST00000326873	NM_000455.4	207	gaC/gaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	234	306	0	ENST00000269305.4:c.770T>A	p.Leu257Gln	p.L257Q	ENST00000269305	NM_001126112.2	257	cTg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112173278	112173278	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	130	278	0	ENST00000257430.4:c.1987C>T	p.Gln663Ter	p.Q663*	ENST00000257430	NM_000038.5	663	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0007413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	42	400	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004217	150004217	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	135	367	1	ENST00000253339.5:c.2008C>T	p.Arg670Trp	p.R670W	ENST00000253339		670	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0007496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	166	337	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577161	64577161	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	256	450	0	ENST00000337652.1:c.421C>T	p.Gln141Ter	p.Q141*	ENST00000337652	NM_130803.2	141	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056262	27056262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	126	325	0	ENST00000324856.7:c.1258C>T	p.Gln420Ter	p.Q420*	ENST00000324856	NM_006015.4	420	Cag/Tag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177956	56177956	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	463	492	0	ENST00000399503.3:c.2929C>T	p.Gln977Ter	p.Q977*	ENST00000399503	NM_005921.1	977	Caa/Taa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117868915	117868915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	193	354	0	ENST00000297338.2:c.784G>A	p.Asp262Asn	p.D262N	ENST00000297338	NM_006265.2	262	Gac/Aac																																																																															
MLL	4297	MSKCC	GRCh37	11	118355658	118355658	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	178	394	0	ENST00000534358.1:c.4300T>C	p.Cys1434Arg	p.C1434R	ENST00000534358	NM_005933.3	1434	Tgc/Cgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42041912	42041912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	284	575	0	ENST00000219905.7:c.6107G>A	p.Cys2036Tyr	p.C2036Y	ENST00000219905	NM_001164273.1	2036	tGc/tAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	115	308	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0007514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	95	284	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0007514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	80	329	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045009	47045009	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	35	296	0	ENST00000329236.7:c.2101C>T	p.Gln701Ter	p.Q701*	ENST00000329236	NM_001204466.1	701	Cag/Tag																																																																															
MET	4233	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0007534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			52	24	368	0	ENST00000397752.3:c.3028+2T>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
CDK12	51755	MSKCC	GRCh37	17	37667784	37667784	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2754	795	570	2	ENST00000447079.4:c.2669G>A	p.Arg890His	p.R890H	ENST00000447079	NM_015083.1	890	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579372	7579373	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			44	24	387	0	ENST00000269305.4:c.314dup	p.Ser106GlnfsTer43	p.S106Qfs*43	ENST00000269305	NM_001126112.2	105	ggc/ggGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	290	323	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	221	146	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0007560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	271	239	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0007560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	276	370	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961231	15961231	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	235	225	0	ENST00000268712.3:c.6158A>G	p.Asp2053Gly	p.D2053G	ENST00000268712	NM_006311.3	2053	gAt/gGt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554492	63554493	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	330	291	0	ENST00000307078.5:c.246dup	p.His83ThrfsTer58	p.H83Tfs*58	ENST00000307078	NM_004655.3	82	-/A																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	151	172	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	137	304	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0007567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	394	442	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0007567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	212	363	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																															
MGA	23269	MSKCC	GRCh37	15	42041117	42041117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	280	551	3	ENST00000219905.7:c.5495G>A	p.Arg1832Gln	p.R1832Q	ENST00000219905	NM_001164273.1	1832	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112174490	112174490	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	131	288	0	ENST00000257430.4:c.3199C>T	p.Gln1067Ter	p.Q1067*	ENST00000257430	NM_000038.5	1067	Caa/Taa																																																																															
GNA11	2767	MSKCC	GRCh37	19	3118944	3118944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	338	334	0	ENST00000078429.4:c.628C>T	p.Arg210Trp	p.R210W	ENST00000078429	NM_002067.2	210	Cgg/Tgg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912813	50912813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	220	440	0	ENST00000440232.2:c.2044C>T	p.Arg682Trp	p.R682W	ENST00000440232	NM_002691.3	682	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0007587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	63	369	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0007587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	28	315	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	216	528	2	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	103	434	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	62	200	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0007691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	95	546	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	135	586	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732976	30732976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	147	345	0	ENST00000359013.4:c.1664C>T	p.Thr555Ile	p.T555I	ENST00000359013	NM_001024847.2	555	aCa/aTa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117961	70117961	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0007691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	107	160	1	ENST00000245479.2:c.429G>A	p.Trp143Ter	p.W143*	ENST00000245479	NM_000346.3	143	tgG/tgA																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395663	45395664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	94	454	0	ENST00000262160.6:c.470dup	p.Asp158GlyfsTer2	p.D158Gfs*2	ENST00000262160	NM_005901.5	157	aag/aaAg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171600	36171600	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0007759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	32	200	0	ENST00000300305.3:c.965C>G	p.Ser322Ter	p.S322*	ENST00000300305		322	tCa/tGa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193219825	193219825	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1114	102	415	0	ENST00000367435.3:c.1579T>G	p.Ser527Ala	p.S527A	ENST00000367435	NM_024529.4	527	Tcg/Gcg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143003275	143003275	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1144	97	466	0	ENST00000262992.4:c.2551A>C	p.Met851Leu	p.M851L	ENST00000262992	NM_001101669.1	851	Atg/Ctg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0007775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	82	487	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715685	30715685	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	70	438	0	ENST00000359013.4:c.1418A>G	p.Tyr473Cys	p.Y473C	ENST00000359013	NM_001024847.2	473	tAc/tGc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285888	38285888	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	39	774	0	ENST00000425967.3:c.523G>C	p.Asp175His	p.D175H	ENST00000425967	NM_001174067.1	175	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578273	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0007775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	73	569	1	ENST00000269305.4:c.576_577delinsTT	p.Gln192_His193delinsHisTyr	p.Q192_H193delinsHY	ENST00000269305	NM_001126112.2	192	caGCat/caTTat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	1258	327	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55220272	55220272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	181	372	0	ENST00000275493.2:c.662G>T	p.Gly221Val	p.G221V	ENST00000275493	NM_005228.3	221	gGg/gTg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502187	157502187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	105	315	0	ENST00000346085.5:c.3220G>A	p.Asp1074Asn	p.D1074N	ENST00000346085	NM_020732.3	1074	Gac/Aac																																																																															
IL10	3586	MSKCC	GRCh37	1	206945695	206945695	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	83	374	0	ENST00000423557.1:c.86G>C	p.Ser29Thr	p.S29T	ENST00000423557	NM_000572.2	29	aGc/aCc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134825442	134825442	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	91	325	0	ENST00000398015.3:c.958A>T	p.Thr320Ser	p.T320S	ENST00000398015	NM_004441.4	320	Act/Tct																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356205	66356205	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	88	366	0	ENST00000273854.3:c.1292T>C	p.Leu431Pro	p.L431P	ENST00000273854	NM_004439.5	431	cTa/cCa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527578	157527578	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142466273		P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	92	290	0	ENST00000346085.5:c.5303C>T	p.Pro1768Leu	p.P1768L	ENST00000346085	NM_020732.3	1768	cCg/cTg																																																																															
ATM	472	MSKCC	GRCh37	11	108115559	108115559	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	178	391	0	ENST00000278616.4:c.707T>G	p.Leu236Arg	p.L236R	ENST00000278616	NM_000051.3	236	cTt/cGt																																																																															
POLE	5426	MSKCC	GRCh37	12	133212482	133212482	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	238	360	0	ENST00000320574.5:c.5807G>C	p.Gly1936Ala	p.G1936A	ENST00000320574	NM_006231.2	1936	gGa/gCa																																																																															
NF1	4763	MSKCC	GRCh37	17	29508439	29508439	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	131	396	0	ENST00000358273.4:c.587-1G>T		p.X196_splice	ENST00000358273	NM_001042492.2	196																																																																																
BRIP1	83990	MSKCC	GRCh37	17	59763223	59763223	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	65	418	0	ENST00000259008.2:c.2879G>C	p.Ser960Thr	p.S960T	ENST00000259008	NM_032043.2	960	aGt/aCt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40714435	40714435	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	69	331	0	ENST00000373198.4:c.3962A>C	p.Glu1321Ala	p.E1321A	ENST00000373198	NM_133170.3	1321	gAg/gCg																																																																															
MED12	9968	MSKCC	GRCh37	X	70349956	70349956	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	139	425	0	ENST00000374080.3:c.3939T>G	p.Ser1313Arg	p.S1313R	ENST00000374080		1313	agT/agG																																																																															
MED12	9968	MSKCC	GRCh37	X	70357225	70357225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	119	280	0	ENST00000374080.3:c.5740C>G	p.Gln1914Glu	p.Q1914E	ENST00000374080		1914	Cag/Gag																																																																															
XIAP	331	MSKCC	GRCh37	X	123019988	123019989	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1151	221	431	0	ENST00000355640.3:c.476_477insG	p.Met160HisfsTer3	p.M160Hfs*3	ENST00000355640		159	gcc/gcGc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032188	10032190	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	69	378	0	ENST00000330684.3:c.633_635del	p.Glu211del	p.E211del	ENST00000330684	NM_001134407.1	211	gaGGAt/gat																																																																															
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	152	498	0	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793663		P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	183	829	2	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717769	89717770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	45	148	0	ENST00000371953.3:c.800dup	p.Asp268GlyfsTer30	p.D268Gfs*30	ENST00000371953	NM_000314.4	265	cta/ctAa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	112	420	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	134	406	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	123	417	2	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	90	348	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141523	11141523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	100	457	0	ENST00000344626.4:c.3500C>T	p.Ser1167Leu	p.S1167L	ENST00000344626	NM_003072.3	1167	tCg/tTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100425	8100425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	179	551	2	ENST00000346208.3:c.404delC	p.Pro135ArgfsTer60	p.P135Rfs*60	ENST00000346208		133	taC/ta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	128	704	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275290	41275290	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113411271		P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	105	289	1	ENST00000349496.5:c.1456C>T	p.Arg486Cys	p.R486C	ENST00000349496	NM_001904.3	486	Cgc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781894		P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	138	440	1	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588981	67588981	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	46	291	0	ENST00000274335.5:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000274335		358	Cga/Tga																																																																															
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	141	424	1	ENST00000575354.2:c.3743delC	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																															
APC	324	MSKCC	GRCh37	5	112151245	112151246	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	137	424	0	ENST00000257430.4:c.893_894del	p.His298LeufsTer28	p.H298Lfs*28	ENST00000257430	NM_000038.5	296	agCAca/agca																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	117	437	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828653	72828653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1339	298	901	3	ENST00000268489.5:c.7928G>A	p.Arg2643His	p.R2643H	ENST00000268489	NM_006885.3	2643	cGt/cAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390736	139390736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	189	542	0	ENST00000277541.6:c.7455del	p.Ser2486ArgfsTer103	p.S2486Rfs*103	ENST00000277541	NM_017617.3	2485	ccC/cc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101170	41101170	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41279256		P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	59	177	0	ENST00000373198.4:c.1186G>A	p.Val396Ile	p.V396I	ENST00000373198	NM_133170.3	396	Gta/Ata																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098363	11098363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	162	526	0	ENST00000344626.4:c.885del	p.Thr296ArgfsTer7	p.T296Rfs*7	ENST00000344626	NM_003072.3	294	gCc/gc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100073	27100073	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	189	490	1	ENST00000324856.7:c.3869C>T	p.Thr1290Met	p.T1290M	ENST00000324856	NM_006015.4	1290	aCg/aTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65301111	65301111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	151	467	0	ENST00000342505.4:c.3337C>T	p.Arg1113Cys	p.R1113C	ENST00000342505	NM_002227.2	1113	Cgc/Tgc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630496	47630496	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	162	364	1	ENST00000233146.2:c.166G>T	p.Glu56Ter	p.E56*	ENST00000233146	NM_000251.2	56	Gag/Tag																																																																															
MSH2	4436	MSKCC	GRCh37	2	47705428	47705428	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	113	456	1	ENST00000233146.2:c.2228C>A	p.Ser743Ter	p.S743*	ENST00000233146	NM_000251.2	743	tCa/tAa																																																																															
REL	5966	MSKCC	GRCh37	2	61149483	61149483	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	128	412	0	ENST00000295025.8:c.1673A>G	p.Gln558Arg	p.Q558R	ENST00000295025	NM_002908.2	558	cAa/cGa																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735624	204735624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	59	139	0	ENST00000302823.3:c.425G>A	p.Gly142Asp	p.G142D	ENST00000302823	NM_005214.4	142	gGc/gAc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936518	49936518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1225	291	789	4	ENST00000296474.3:c.1409G>A	p.Arg470His	p.R470H	ENST00000296474	NM_002447.2	470	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927976	178927976	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	40	211	0	ENST00000263967.3:c.1254A>T	p.Glu418Asp	p.E418D	ENST00000263967	NM_006218.2	418	gaA/gaT																																																																															
SOX2	6657	MSKCC	GRCh37	3	181431044	181431044	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	75	267	0	ENST00000325404.1:c.896A>C	p.Gln299Pro	p.Q299P	ENST00000325404	NM_003106.3	299	cAg/cCg																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1805428	1805428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	154	451	0	ENST00000260795.2:c.940G>A	p.Ala314Thr	p.A314T	ENST00000260795		314	Gct/Act																																																																															
KDR	3791	MSKCC	GRCh37	4	55955593	55955593	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	125	627	3	ENST00000263923.4:c.3352C>T	p.Arg1118Ter	p.R1118*	ENST00000263923	NM_002253.2	1118	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187522449	187522449	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	217	581	0	ENST00000441802.2:c.11614C>T	p.Arg3872Ter	p.R3872*	ENST00000441802	NM_005245.3	3872	Cga/Tga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177632	56177632	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	141	429	0	ENST00000399503.3:c.2605A>G	p.Ile869Val	p.I869V	ENST00000399503	NM_005921.1	869	Atc/Gtc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729606	41729606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1101	214	777	0	ENST00000242208.4:c.923G>A	p.Arg308His	p.R308H	ENST00000242208	NM_002192.2	308	cGt/cAt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211379	98211379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	158	488	0	ENST00000331920.6:c.3776C>T	p.Thr1259Ile	p.T1259I	ENST00000331920	NM_000264.3	1259	aCa/aTa																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250158	110250158	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	24	304	0	ENST00000374672.4:c.517T>C	p.Tyr173His	p.Y173H	ENST00000374672	NM_004235.4	173	Tat/Cat																																																																															
ABL1	25	MSKCC	GRCh37	9	133750268	133750268	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	58	383	3	ENST00000318560.5:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000318560	NM_005157.4	367	Cga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106016	8106016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	97	346	1	ENST00000346208.3:c.836C>T	p.Thr279Met	p.T279M	ENST00000346208		279	aCg/aTg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189497	94189497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	112	402	0	ENST00000323929.3:c.1508G>A	p.Arg503His	p.R503H	ENST00000323929	NM_005591.3	503	cGt/cAt																																																																															
ATM	472	MSKCC	GRCh37	11	108114842	108114842	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145355104		P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	66	319	0	ENST00000278616.4:c.659C>T	p.Ala220Val	p.A220V	ENST00000278616	NM_000051.3	220	gCg/gTg																																																																															
ATM	472	MSKCC	GRCh37	11	108175495	108175495	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	149	386	0	ENST00000278616.4:c.5590A>G	p.Thr1864Ala	p.T1864A	ENST00000278616	NM_000051.3	1864	Aca/Gca																																																																															
MLL2	8085	MSKCC	GRCh37	12	49435716	49435716	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	168	548	2	ENST00000301067.7:c.6167A>G	p.Asp2056Gly	p.D2056G	ENST00000301067	NM_003482.3	2056	gAc/gGc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426836	121426836	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	106	327	0	ENST00000257555.6:c.526+1G>A		p.X176_splice	ENST00000257555		176																																																																																
IGF1R	3480	MSKCC	GRCh37	15	99465432	99465432	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	137	426	1	ENST00000268035.6:c.2257C>T	p.Arg753Ter	p.R753*	ENST00000268035	NM_000875.3	753	Cga/Tga																																																																															
CTCF	10664	MSKCC	GRCh37	16	67662384	67662384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112926498		P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	212	579	0	ENST00000264010.4:c.1630C>T	p.Arg544Cys	p.R544C	ENST00000264010	NM_006565.3	544	Cgc/Tgc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347591	89347591	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1163	288	826	0	ENST00000301030.4:c.5359C>A	p.Leu1787Ile	p.L1787I	ENST00000301030	NM_001256183.1	1787	Ctt/Att																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7989483	7989483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	103	379	0	ENST00000319144.4:c.203G>A	p.Arg68His	p.R68H	ENST00000319144	NM_001139.2	68	cGc/cAc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15967432	15967432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	198	539	3	ENST00000268712.3:c.5171G>A	p.Arg1724Gln	p.R1724Q	ENST00000268712	NM_006311.3	1724	cGg/cAg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17118353	17118353	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	196	517	0	ENST00000285071.4:c.1484T>C	p.Leu495Pro	p.L495P	ENST00000285071	NM_144997.5	495	cTg/cCg																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110150	3110150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	71	227	0	ENST00000078429.4:c.140C>T	p.Thr47Met	p.T47M	ENST00000078429	NM_002067.2	47	aCg/aTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291143	10291143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	233	595	1	ENST00000340748.4:c.328G>A	p.Gly110Arg	p.G110R	ENST00000340748		110	Ggg/Agg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355296	15355296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	26	102	0	ENST00000263377.2:c.2327C>T	p.Pro776Leu	p.P776L	ENST00000263377	NM_058243.2	776	cCg/cTg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256659	19256659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	120	321	0	ENST00000162023.5:c.1054C>T	p.Arg352Trp	p.R352W	ENST00000162023		352	Cgg/Tgg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023453	31023453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	50	348	0	ENST00000375687.4:c.2938A>G	p.Ile980Val	p.I980V	ENST00000375687	NM_015338.5	980	Att/Gtt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46256698	46256698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	189	790	0	ENST00000371998.3:c.754C>T	p.Arg252Cys	p.R252C	ENST00000371998		252	Cgc/Tgc																																																																															
NF2	4771	MSKCC	GRCh37	22	30054252	30054252	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	120	554	0	ENST00000338641.4:c.674G>A	p.Arg225Gln	p.R225Q	ENST00000338641	NM_000268.3	225	cGg/cAg																																																																															
EP300	2033	MSKCC	GRCh37	22	41513481	41513481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	59	381	0	ENST00000263253.7:c.385G>A	p.Ala129Thr	p.A129T	ENST00000263253	NM_001429.3	129	Gca/Aca																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2208958	2208958	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1083	156	590	0	ENST00000398665.3:c.992del	p.Asn331ThrfsTer56	p.N331Tfs*56	ENST00000398665	NM_032482.2	330	Aaa/aa																																																																															
MST1	4485	MSKCC	GRCh37	3	49723126	49723128	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	167	497	0	ENST00000449682.2:c.1288_1290delGAG	p.Glu430del	p.E430del	ENST00000449682	NM_020998.3	430	GAG/-																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495415	56495417	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	189	518	0	ENST00000267101.3:c.3609_3611del	p.Arg1205del	p.R1205del	ENST00000267101	NM_001982.3	1202	cGGAgg/cgg																																																																															
MLL2	8085	MSKCC	GRCh37	12	49424443	49424443	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	148	463	0	ENST00000301067.7:c.13780del	p.Ala4594ProfsTer23	p.A4594Pfs*23	ENST00000301067	NM_003482.3	4594	Gcc/cc																																																																															
B2M	567	MSKCC	GRCh37	15	45007689	45007690	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	116	332	0	ENST00000558401.1:c.137_138del	p.Tyr46CysfsTer10	p.Y46Cfs*10	ENST00000558401	NM_004048.2	46	TAt/t																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821553	72821554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	113	442	0	ENST00000268489.5:c.10621dup	p.Glu3541GlyfsTer30	p.E3541Gfs*30	ENST00000268489	NM_006885.3	3541	gag/gGag																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40376865	40376866	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1410	272	859	0	ENST00000293328.3:c.306dup	p.Met103HisfsTer14	p.M103Hfs*14	ENST00000293328	NM_012448.3	102	-/C																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020769	37020769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1107	71	510	0	ENST00000358127.4:c.76del	p.Val26PhefsTer3	p.V26Ffs*3	ENST00000358127	NM_001280556.1	26	Gtt/tt																																																																															
MGA	23269	MSKCC	GRCh37	15	42059170	42059170	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1157	289	828	3	ENST00000219905.7:c.8895delC	p.Thr2966ProfsTer4	p.T2966Pfs*4	ENST00000219905	NM_001164273.1	2964	Ccc/cc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0007846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	78	498	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041259	47041259	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	104	681	1	ENST00000329236.7:c.1453C>T	p.Gln485Ter	p.Q485*	ENST00000329236	NM_001204466.1	485	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577524	7577524	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	182	540	0	ENST00000269305.4:c.757A>G	p.Thr253Ala	p.T253A	ENST00000269305	NM_001126112.2	253	Acc/Gcc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945595	38945595	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0007856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	97	312	0	ENST00000357387.3:c.4631C>G	p.Ser1544Ter	p.S1544*	ENST00000357387	NM_152756.3	1544	tCa/tGa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061185	38061202	+	inframe_deletion	In_Frame_Del	DEL	GCACTTGAAGCGCTTCTG	GCACTTGAAGCGCTTCTG	-			P-0007856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	84	255	0	ENST00000250448.2:c.787_804del	p.Gln263_Cys268del	p.Q263_C268del	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTCAAGTGC/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0007889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	61	410	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
MET	4233	MSKCC	GRCh37	7	116371755	116371755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367628460		P-0007889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	35	382	0	ENST00000397752.3:c.1234C>T	p.Arg412Cys	p.R412C	ENST00000397752	NM_000245.2	412	Cgc/Tgc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332409	70332409	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200477577		P-0007889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	43	379	0	ENST00000373644.4:c.314C>T	p.Ala105Val	p.A105V	ENST00000373644	NM_030625.2	105	gCg/gTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0007896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	982	387	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0007896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	200	353	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141463	11141463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	132	427	0	ENST00000344626.4:c.3440C>T	p.Ser1147Phe	p.S1147F	ENST00000344626	NM_003072.3	1147	tCt/tTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48951045	48951063	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCCTAAAGAACTGCACAG	CTCCTAAAGAACTGCACAG	-			P-0007896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	31	243	0	ENST00000267163.4:c.1216-9_1225del		p.X406_splice	ENST00000267163	NM_000321.2	406																																																																																
HRAS	3265	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28933406		P-0007900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	392	382	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437848	110437848	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	146	124	0	ENST00000375856.3:c.553G>T	p.Gly185Trp	p.G185W	ENST00000375856	NM_003749.2	185	Ggg/Tgg																																																																															
CDH1	999	MSKCC	GRCh37	16	68849565	68849565	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	46	508	2	ENST00000261769.5:c.1468G>T	p.Glu490Ter	p.E490*	ENST00000261769	NM_004360.3	490	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578495	7578507	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCTGCACAGGG	CAGCTGCACAGGG	-			P-0007900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	308	361	0	ENST00000269305.4:c.423_435del	p.Pro142GlyfsTer24	p.P142Gfs*24	ENST00000269305	NM_001126112.2	141	tgCCCTGTGCAGCTG/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577035	7577035	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	299	481	0	ENST00000269305.4:c.903delA	p.Ser303AlafsTer42	p.S303Afs*42	ENST00000269305	NM_001126112.2	301	ccA/cc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412639	139412639	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1037236860		P-0007924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	59	387	1	ENST00000277541.6:c.1205C>T	p.Ser402Leu	p.S402L	ENST00000277541	NM_017617.3	402	tCg/tTg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47693852	47693852	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0007924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1130	70	544	0	ENST00000233146.2:c.1566C>G	p.Tyr522Ter	p.Y522*	ENST00000233146	NM_000251.2	522	taC/taG																																																																															
MST1R	4486	MSKCC	GRCh37	3	49924771	49924771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	117	805	2	ENST00000296474.3:c.4172G>A	p.Arg1391Gln	p.R1391Q	ENST00000296474	NM_002447.2	1391	cGg/cAg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117862937	117862937	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs202084322		P-0007924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1133	73	662	0	ENST00000297338.2:c.1540C>T	p.Gln514Ter	p.Q514*	ENST00000297338	NM_006265.2	514	Cag/Tag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737680	145737680	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	187	341	1	ENST00000428558.2:c.3083T>A	p.Val1028Glu	p.V1028E	ENST00000428558	NM_004260.3	1028	gTg/gAg																																																																															
MED12	9968	MSKCC	GRCh37	X	70350017	70350017	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	245	231	0	ENST00000374080.3:c.4000G>C	p.Glu1334Gln	p.E1334Q	ENST00000374080		1334	Gag/Cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0007990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	1216	365	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0007990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	176	354	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0007990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	113	480	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
YES1	7525	MSKCC	GRCh37	18	724596	724596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	292	261	0	ENST00000314574.4:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000314574	NM_005433.3	487	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0007990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	241	466	1	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	339	314	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
KDR	3791	MSKCC	GRCh37	4	55961059	55961059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	188	432	0	ENST00000263923.4:c.2881C>T	p.Arg961Trp	p.R961W	ENST00000263923	NM_002253.2	961	Cgg/Tgg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	81	334	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0008014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	102	353	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7980033	7980033	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	49	297	0	ENST00000319144.4:c.1304T>A	p.Val435Asp	p.V435D	ENST00000319144	NM_001139.2	435	gTc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578445	7578449	+	missense_variant	Missense_Mutation	ONP	ATGGC	ATGGC	CTGGG			P-0008014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	78	283	0	ENST00000269305.4:c.481_485delinsCCCAG	p.Ala161_Ile162delinsProSer	p.A161_I162delinsPS	ENST00000269305	NM_001126112.2	161	GCCATc/CCCAGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0008031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	86	183	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	48	289	1	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112174865	112174865	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0008031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	70	352	0	ENST00000257430.4:c.3574A>T	p.Lys1192Ter	p.K1192*	ENST00000257430	NM_000038.5	1192	Aaa/Taa																																																																															
MLL2	8085	MSKCC	GRCh37	12	49437469	49437469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	97	522	0	ENST00000301067.7:c.5416G>A	p.Ala1806Thr	p.A1806T	ENST00000301067	NM_003482.3	1806	Gcc/Acc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95597889	95597889	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	100	400	0	ENST00000343455.3:c.395C>G	p.Ser132Cys	p.S132C	ENST00000343455	NM_177438.2	132	tCt/tGt																																																																															
MGA	23269	MSKCC	GRCh37	15	42052601	42052601	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0008067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	65	701	0	ENST00000219905.7:c.7272T>G	p.Tyr2424Ter	p.Y2424*	ENST00000219905	NM_001164273.1	2424	taT/taG																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519436	176519436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	26	455	0	ENST00000292408.4:c.842T>C	p.Ile281Thr	p.I281T	ENST00000292408	NM_213647.1	281	aTc/aCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0008148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	24	255	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68835629	68835629	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	46	598	1	ENST00000261769.5:c.220C>T	p.Arg74Ter	p.R74*	ENST00000261769	NM_004360.3	74	Cga/Tga																																																																															
BRD4	23476	MSKCC	GRCh37	19	15379801	15379801	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1058	106	586	1	ENST00000263377.2:c.338G>T	p.Arg113Leu	p.R113L	ENST00000263377	NM_058243.2	113	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0008158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	44	225	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163512	47163512	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	29	211	0	ENST00000409792.3:c.2614C>T	p.Gln872Ter	p.Q872*	ENST00000409792	NM_014159.6	872	Caa/Taa																																																																															
INHA	3623	MSKCC	GRCh37	2	220439922	220439922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	63	450	0	ENST00000243786.2:c.775C>A	p.His259Asn	p.H259N	ENST00000243786	NM_002191.3	259	Cat/Aat																																																																															
MST1R	4486	MSKCC	GRCh37	3	49935554	49935554	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	58	430	1	ENST00000296474.3:c.1810G>T	p.Glu604Ter	p.E604*	ENST00000296474	NM_002447.2	604	Gag/Tag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98232191	98232191	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	48	232	0	ENST00000331920.6:c.1751A>G	p.Asn584Ser	p.N584S	ENST00000331920	NM_000264.3	584	aAt/aGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107084	27107084	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	28	106	0	ENST00000324856.7:c.6696del	p.Arg2233GlyfsTer34	p.R2233Gfs*34	ENST00000324856	NM_006015.4	2232	cGg/cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398280	25398281	+	missense_variant	Missense_Mutation	DNP	GC	GC	CA			P-0008158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	29	194	0	ENST00000256078.4:c.38_39delinsTG	p.Gly13Val	p.G13V	ENST00000256078	NM_033360.2	13	gGC/gTG																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448564	89448564	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	205	406	1	ENST00000336596.2:c.1528C>T	p.Arg510Ter	p.R510*	ENST00000336596	NM_005233.5	510	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108165759	108165759	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	199	390	0	ENST00000278616.4:c.4882A>G	p.Met1628Val	p.M1628V	ENST00000278616	NM_000051.3	1628	Atg/Gtg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220478	1220478	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0008161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	197	446	0	ENST00000326873.7:c.571A>T	p.Lys191Ter	p.K191*	ENST00000326873	NM_000455.4	191	Aaa/Taa																																																																															
NF2	4771	MSKCC	GRCh37	22	30069331	30069332	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0008161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	76	366	1	ENST00000338641.4:c.1197_1198del	p.Gln400GlufsTer6	p.Q400Efs*6	ENST00000338641	NM_000268.3	399	gCC/g																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599929	10599929	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1047	890	463	0	ENST00000171111.5:c.1647del	p.Met550Ter	p.M550*	ENST00000171111	NM_203500.1	549	ccC/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577520	7577520	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	56	278	0	ENST00000269305.4:c.761T>G	p.Ile254Ser	p.I254S	ENST00000269305	NM_001126112.2	254	aTc/aGc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584607	48584607	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	48	377	0	ENST00000342988.3:c.780C>A	p.Tyr260Ter	p.Y260*	ENST00000342988	NM_005359.5	260	taC/taA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0008181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	68	346	0	ENST00000256078.4:c.34_35delGGinsCT	p.Gly12Leu	p.G12L	ENST00000256078	NM_033360.2	12	GGt/CTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692953	89692953	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	70	457	0	ENST00000371953.3:c.437T>G	p.Leu146Ter	p.L146*	ENST00000371953	NM_000314.4	146	tTa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	72	623	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
CASP8	841	MSKCC	GRCh37	2	202151254	202151254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	43	881	0	ENST00000358485.4:c.1554G>A	p.Met518Ile	p.M518I	ENST00000358485	NM_001080125.1	518	atG/atA																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660894	227660894	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs13306470		P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	83	569	1	ENST00000305123.5:c.2561G>T	p.Arg854Leu	p.R854L	ENST00000305123	NM_005544.2	854	cGc/cTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390911	89390911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	64	559	0	ENST00000336596.2:c.977C>A	p.Pro326Gln	p.P326Q	ENST00000336596	NM_005233.5	326	cCa/cAa																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119631575	119631575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	46	697	0	ENST00000316626.5:c.691G>A	p.Ala231Thr	p.A231T	ENST00000316626		231	Gcc/Acc																																																																															
KIT	3815	MSKCC	GRCh37	4	55593414	55593414	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	47	737	1	ENST00000288135.5:c.1571C>A	p.Pro524His	p.P524H	ENST00000288135	NM_000222.2	524	cCt/cAt																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858176	27858176	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	87	854	0	ENST00000359303.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000359303	NM_003535.2	132	cGt/cTt																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910707	29910707	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	73	666	0	ENST00000376809.5:c.247T>A	p.Tyr83Asn	p.Y83N	ENST00000376809	NM_002116.7	83	Tat/Aat																																																																															
ETV1	2115	MSKCC	GRCh37	7	13978841	13978841	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	68	568	0	ENST00000405192.2:c.266A>G	p.Lys89Arg	p.K89R	ENST00000405192	NM_001163147.1	89	aAg/aGg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507326	8507326	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	104	723	1	ENST00000356435.5:c.1652A>T	p.Tyr551Phe	p.Y551F	ENST00000356435		551	tAc/tTc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625363	69625363	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	57	614	0	ENST00000334134.2:c.430C>A	p.Arg144Ser	p.R144S	ENST00000334134	NM_005247.2	144	Cgc/Agc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609883	81609883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	91	531	0	ENST00000298171.2:c.1481G>A	p.Cys494Tyr	p.C494Y	ENST00000298171	NM_000369.2	494	tGc/tAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29559089	29559089	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs1131691089		P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	27	103	0	ENST00000358273.4:c.3198-2A>G		p.X1066_splice	ENST00000358273	NM_001042492.2	1066																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48575219	48575219	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	73	521	0	ENST00000342988.3:c.413C>G	p.Ser138Ter	p.S138*	ENST00000342988	NM_005359.5	138	tCa/tGa																																																																															
ATRX	546	MSKCC	GRCh37	X	76939118	76939118	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	47	692	0	ENST00000373344.5:c.1630C>G	p.His544Asp	p.H544D	ENST00000373344	NM_000489.3	544	Cat/Gat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0008295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	1015	537	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600417	10600417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	1023	584	0	ENST00000171111.5:c.1438G>T	p.Gly480Trp	p.G480W	ENST00000171111	NM_203500.1	480	Ggg/Tgg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205672	128205672	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	378	434	0	ENST00000341105.2:c.203C>A	p.Ala68Glu	p.A68E	ENST00000341105	NM_032638.4	68	gCg/gAg																																																																															
HGF	3082	MSKCC	GRCh37	7	81335607	81335607	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	268	433	0	ENST00000222390.5:c.1753G>T	p.Ala585Ser	p.A585S	ENST00000222390	NM_000601.4	585	Gcc/Tcc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94223998	94223998	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0008295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	243	328	0	ENST00000323929.3:c.153+1G>T		p.X51_splice	ENST00000323929	NM_005591.3	51																																																																																
NF1	4763	MSKCC	GRCh37	17	29486068	29486068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	190	291	0	ENST00000358273.4:c.245C>T	p.Ser82Phe	p.S82F	ENST00000358273	NM_001042492.2	82	tCt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0008300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	240	352	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0008300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	82	313	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78617593	78617593	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	69	318	0	ENST00000306801.3:c.331G>T	p.Glu111Ter	p.E111*	ENST00000306801	NM_020761.2	111	Gag/Tag																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945363	54945363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	81	352	0	ENST00000312783.6:c.1063G>A	p.Gly355Arg	p.G355R	ENST00000312783	NM_198436.1	355	Gga/Aga																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123480499	123480499	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs148554414		P-0008300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	87	311	1	ENST00000371139.4:c.7G>T	p.Ala3Ser	p.A3S	ENST00000371139	NM_001114937.2	3	Gca/Tca																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94169023	94169054	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAAATGTCTTCTTCCACATCTGATTCATCT	GAAAAATGTCTTCTTCCACATCTGATTCATCT	-			P-0008300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	48	506	0	ENST00000323929.3:c.1938_1969del	p.Asp647TyrfsTer28	p.D647Yfs*28	ENST00000323929	NM_005591.3	646	gtAGATGAATCAGATGTGGAAGAAGACATTTTTCct/gtct																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197801	66197802	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0008300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	67	511	1	ENST00000273854.3:c.2897_2898delinsAA	p.Ala966Glu	p.A966E	ENST00000273854	NM_004439.5	966	gCC/gAA																																																																															
FAT1	2195	MSKCC	GRCh37	4	187531111	187531112	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0008300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	54	409	0	ENST00000441802.2:c.9911_9912delinsAG	p.Thr3304Lys	p.T3304K	ENST00000441802	NM_005245.3	3304	aCA/aAG																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106099	27106099	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	81	377	1	ENST00000324856.7:c.5710G>T	p.Glu1904Ter	p.E1904*	ENST00000324856	NM_006015.4	1904	Gaa/Taa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111507	8111508	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	121	518	0	ENST00000346208.3:c.994dupG	p.Ala332GlyfsTer20	p.A332Gfs*20	ENST00000346208		331	-/G																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539671	187539671	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	72	625	0	ENST00000441802.2:c.8069del	p.Tyr2690LeufsTer33	p.Y2690Lfs*33	ENST00000441802	NM_005245.3	2690	tAt/tt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			17	777	561	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			19	500	466	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	213	248	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426722	212426722	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	71	558	0	ENST00000342788.4:c.2393T>G	p.Leu798Arg	p.L798R	ENST00000342788	NM_005235.2	798	cTt/cGt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9783347	9783347	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148984508		P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	257	533	0	ENST00000377346.4:c.2591C>T	p.Pro864Leu	p.P864L	ENST00000377346	NM_005026.3	864	cCg/cTg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662764	227662764	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	132	495	0	ENST00000305123.5:c.691A>C	p.Thr231Pro	p.T231P	ENST00000305123	NM_005544.2	231	Acg/Ccg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138426114	138426114	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	39	566	0	ENST00000289153.2:c.1417T>G	p.Leu473Val	p.L473V	ENST00000289153	NM_006219.2	473	Ttg/Gtg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143181666	143181666	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1084	88	702	0	ENST00000262992.4:c.667A>C	p.Asn223His	p.N223H	ENST00000262992	NM_001101669.1	223	Aac/Cac																																																																															
NSD1	64324	MSKCC	GRCh37	5	176684078	176684078	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1179	141	637	0	ENST00000439151.2:c.4892A>C	p.Lys1631Thr	p.K1631T	ENST00000439151	NM_022455.4	1631	aAg/aCg																																																																															
TET1	80312	MSKCC	GRCh37	10	70404656	70404656	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	237	623	2	ENST00000373644.4:c.2170G>T	p.Gly724Ter	p.G724*	ENST00000373644	NM_030625.2	724	Gga/Tga																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154238	2154238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	254	483	0	ENST00000434045.2:c.690G>T	p.Glu230Asp	p.E230D	ENST00000434045	NM_001127598.1	230	gaG/gaT																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572633	64572633	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	270	418	0	ENST00000337652.1:c.1238A>C	p.Glu413Ala	p.E413A	ENST00000337652	NM_130803.2	413	gAg/gCg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999455	100999455	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1104	390	767	0	ENST00000325455.5:c.347A>C	p.Asp116Ala	p.D116A	ENST00000325455	NM_001202474.3	116	gAc/gCc																																																																															
POLE	5426	MSKCC	GRCh37	12	133257833	133257833	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	328	530	0	ENST00000320574.5:c.95T>G	p.Leu32Arg	p.L32R	ENST00000320574	NM_006231.2	32	cTc/cGc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385216	41385216	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2234	141	576	0	ENST00000373198.4:c.745T>C	p.Ser249Pro	p.S249P	ENST00000373198	NM_133170.3	249	Tca/Cca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259065	16259066	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	155	421	1	ENST00000375759.3:c.6330_6331delinsTT	p.Glu2111Ter	p.E2111*	ENST00000375759	NM_015001.2	2110	ggGGag/ggTTag																																																																															
CDH1	999	MSKCC	GRCh37	16	68772229	68772230	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCTGCCA			P-0008424-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	112	411	0	ENST00000261769.5:c.84_91dup	p.Gly31AlafsTer28	p.G31Afs*28	ENST00000261769	NM_004360.3	26	-/CCCTGCCA																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177584	56177584	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368201444		P-0008440-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	113	439	1	ENST00000399503.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000399503	NM_005921.1	853	Cgt/Tgt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004775	150004775	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008440-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	139	369	0	ENST00000253339.5:c.1450A>G	p.Thr484Ala	p.T484A	ENST00000253339		484	Aca/Gca																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154749	2154749	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008440-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	150	512	0	ENST00000434045.2:c.472C>T	p.Pro158Ser	p.P158S	ENST00000434045	NM_001127598.1	158	Ccg/Tcg																																																																															
MLL2	8085	MSKCC	GRCh37	12	49432581	49432581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008440-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	128	390	0	ENST00000301067.7:c.8558C>T	p.Pro2853Leu	p.P2853L	ENST00000301067	NM_003482.3	2853	cCg/cTg																																																																															
NF1	4763	MSKCC	GRCh37	17	29560088	29560088	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008440-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	162	437	0	ENST00000358273.4:c.3565C>T	p.Gln1189Ter	p.Q1189*	ENST00000358273	NM_001042492.2	1189	Caa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29665764	29665764	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008440-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	143	475	0	ENST00000358273.4:c.6862C>T	p.Gln2288Ter	p.Q2288*	ENST00000358273	NM_001042492.2	2288	Caa/Taa																																																																															
GATA1	2623	MSKCC	GRCh37	X	48649680	48649680	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008440-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	133	643	1	ENST00000376670.3:c.164C>A	p.Ala55Asp	p.A55D	ENST00000376670	NM_002049.3	55	gCt/gAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0008481-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			276	69	303	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
CDH1	999	MSKCC	GRCh37	16	68842693	68842693	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008481-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			239	191	844	0	ENST00000261769.5:c.631del	p.Thr211GlnfsTer4	p.T211Qfs*4	ENST00000261769	NM_004360.3	210	gAa/ga																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45873407	45873407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008481-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			314	90	680	3	ENST00000391945.4:c.89G>A	p.Arg30His	p.R30H	ENST00000391945	NM_000400.3	30	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0008483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	93	222	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829889	72829889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	232	628	2	ENST00000268489.5:c.6692C>T	p.Pro2231Leu	p.P2231L	ENST00000268489	NM_006885.3	2231	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112162859	112162859	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	179	373	0	ENST00000257430.4:c.1464del	p.Thr489LeufsTer9	p.T489Lfs*9	ENST00000257430	NM_000038.5	488	cTt/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0008521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	291	472	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	200	364	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0008521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	196	499	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0008521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	126	436	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287156	33287156	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0008521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	97	317	0	ENST00000374542.5:c.1940+1G>C		p.X647_splice	ENST00000374542	NM_001141970.1	647																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157405827	157405827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	90	396	0	ENST00000346085.5:c.2069C>T	p.Thr690Met	p.T690M	ENST00000346085	NM_020732.3	690	aCg/aTg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935705	13935705	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	97	269	0	ENST00000405192.2:c.1151G>T	p.Gly384Val	p.G384V	ENST00000405192	NM_001163147.1	384	gGa/gTa																																																																															
ETV1	2115	MSKCC	GRCh37	7	14026266	14026266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	173	376	0	ENST00000405192.2:c.178G>A	p.Glu60Lys	p.E60K	ENST00000405192	NM_001163147.1	60	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175036	112175037	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	73	387	0	ENST00000257430.4:c.3746dup	p.Cys1249TrpfsTer7	p.C1249Wfs*7	ENST00000257430	NM_000038.5	1249	tgc/tGgc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123179069	123179069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	133	459	0	ENST00000218089.9:c.518C>A	p.Ser173Tyr	p.S173Y	ENST00000218089	NM_001042749.1	173	tCc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576865	7576865	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0008538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	136	544	0	ENST00000269305.4:c.981T>G	p.Tyr327Ter	p.Y327*	ENST00000269305	NM_001126112.2	327	taT/taG																																																																															
RASA1	5921	MSKCC	GRCh37	5	86674316	86674317	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0008538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	55	338	0	ENST00000274376.6:c.2450_2451del	p.Ser817TyrfsTer12	p.S817Yfs*12	ENST00000274376	NM_002890.2	816	gaCTct/gact																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0008541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	403	586	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0008541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	90	534	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
ALK	238	MSKCC	GRCh37	2	29450511	29450511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	92	603	0	ENST00000389048.3:c.2843C>T	p.Pro948Leu	p.P948L	ENST00000389048	NM_004304.4	948	cCc/cTc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98232135	98232135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	98	497	0	ENST00000331920.6:c.1807C>T	p.Arg603Cys	p.R603C	ENST00000331920	NM_000264.3	603	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175245	112175245	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	79	367	0	ENST00000257430.4:c.3954del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1318	gaT/ga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238758086		P-0008571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	202	259	0	ENST00000358026.2:c.2729C>T	p.Thr910Met	p.T910M	ENST00000358026	NM_001128849.1	910	aCg/aTg																																																																															
FYN	2534	MSKCC	GRCh37	6	111982979	111982979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2673	259	428	1	ENST00000368678.4:c.1568C>T	p.Ala523Val	p.A523V	ENST00000368678		523	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0008584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	257	304	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0008584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	214	375	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210692	5210692	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	134	284	0	ENST00000357368.4:c.5359C>T	p.Arg1787Trp	p.R1787W	ENST00000357368	NM_002850.3	1787	Cgg/Tgg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18576896	18576897	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	124	436	0	ENST00000266497.5:c.2306dup	p.Asn769LysfsTer3	p.N769Kfs*3	ENST00000266497		768	-/A																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	99	907	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468029	50468029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	104	680	0	ENST00000331340.3:c.1264G>A	p.Ala422Thr	p.A422T	ENST00000331340	NM_006060.4	422	Gcg/Acg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11189847	11189847	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	94	842	0	ENST00000361445.4:c.5662T>A	p.Phe1888Ile	p.F1888I	ENST00000361445	NM_004958.3	1888	Ttc/Atc																																																																															
ATM	472	MSKCC	GRCh37	11	108190748	108190748	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	38	978	4	ENST00000278616.4:c.6415G>T	p.Glu2139Ter	p.E2139*	ENST00000278616	NM_000051.3	2139	Gaa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108203609	108203609	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	34	668	2	ENST00000278616.4:c.7909C>T	p.Gln2637Ter	p.Q2637*	ENST00000278616	NM_000051.3	2637	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112173956	112173956	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	36	633	0	ENST00000257430.4:c.2667del	p.Val890SerfsTer26	p.V890Sfs*26	ENST00000257430	NM_000038.5	889	Aaa/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0008594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	72	229	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0008594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	101	307	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0008594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	80	220	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	53	391	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549351	187549351	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	136	453	0	ENST00000441802.2:c.4767G>C	p.Lys1589Asn	p.K1589N	ENST00000441802	NM_005245.3	1589	aaG/aaC																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729454	41729454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1553	334	1015	0	ENST00000242208.4:c.1075G>A	p.Ala359Thr	p.A359T	ENST00000242208	NM_002192.2	359	Gca/Aca																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267223	41267235	+	protein_altering_variant	In_Frame_Del	DEL	TAAAATGGCAGTG	TAAAATGGCAGTG	A			P-0008594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	74	342	0	ENST00000349496.5:c.807_819delTAAAATGGCAGTGinsA	p.Lys270_Val273del	p.K270_V273del	ENST00000349496	NM_001904.3	269	gcTAAAATGGCAGTG/gcA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	829	315	0	ENST00000269305.4:c.742C>G	p.Arg248Gly	p.R248G	ENST00000269305	NM_001126112.2	248	Cgg/Ggg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117715389	117715389	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	86	296	0	ENST00000368508.3:c.1100G>T	p.Gly367Val	p.G367V	ENST00000368508	NM_002944.2	367	gGa/gTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242448	55242449	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTCCCGTCGCTATCAAGG			P-0008602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2842	3741	290	0	ENST00000275493.2:c.2219_2236dup	p.Lys745_Glu746insValProValAlaIleLys	p.K745_E746insVPVAIK	ENST00000275493	NM_005228.3	740	att/aTTCCCGTCGCTATCAAGGtt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0008645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	360	440	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542903	187542903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	201	402	0	ENST00000441802.2:c.4837G>T	p.Asp1613Tyr	p.D1613Y	ENST00000441802	NM_005245.3	1613	Gat/Tat																																																																															
JAK2	3717	MSKCC	GRCh37	9	5066774	5066774	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	18	309	0	ENST00000381652.3:c.1311G>C	p.Leu437Phe	p.L437F	ENST00000381652	NM_004972.3	437	ttG/ttC																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24134026	24134026	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	272	648	0	ENST00000263121.7:c.177G>C	p.Glu59Asp	p.E59D	ENST00000263121	NM_003073.3	59	gaG/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7576925	7576926	+	inframe_insertion,splice_region_variant	In_Frame_Ins	INS	-	-	GATAGGAAAGAGGCT			P-0008645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	125	416	0	ENST00000269305.4:c.921_922insGCCTCTTTCCTATCA	p.Ala307_Leu308insAlaSerPheLeuSer	p.A307_L308insASFLS	ENST00000269305	NM_001126112.2	307	gca/gcAGCCTCTTTCCTATCa																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0008652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	98	297	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
AR	367	MSKCC	GRCh37	X	66941796	66941796	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	63	457	0	ENST00000374690.3:c.2440T>G	p.Phe814Val	p.F814V	ENST00000374690	NM_000044.3	814	Ttc/Gtc																																																																															
APC	324	MSKCC	GRCh37	5	112174835	112174835	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0008652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	67	383	0	ENST00000257430.4:c.3544A>T	p.Lys1182Ter	p.K1182*	ENST00000257430	NM_000038.5	1182	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519991		P-0008652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	111	215	0	ENST00000269305.4:c.536A>C	p.His179Pro	p.H179P	ENST00000269305	NM_001126112.2	179	cAt/cCt																																																																															
JUN	3725	MSKCC	GRCh37	1	59247985	59247986	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0008652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	64	365	0	ENST00000371222.2:c.756_757dup	p.Ile253ArgfsTer9	p.I253Rfs*9	ENST00000371222	NM_002228.3	253	atc/aGAtc																																																																															
AR	367	MSKCC	GRCh37	X	66863148	66863148	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	38	361	0	ENST00000374690.3:c.1667C>A	p.Pro556His	p.P556H	ENST00000374690	NM_000044.3	556	cCc/cAc																																																																															
AR	367	MSKCC	GRCh37	X	66931251	66931251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	48	415	0	ENST00000374690.3:c.1893G>T	p.Lys631Asn	p.K631N	ENST00000374690	NM_000044.3	631	aaG/aaT																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0008662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	26	426	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593405	48593405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	11	346	0	ENST00000342988.3:c.1156G>A	p.Gly386Ser	p.G386S	ENST00000342988	NM_005359.5	386	Ggt/Agt																																																																															
ARAF	369	MSKCC	GRCh37	X	47426645	47426645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	31	322	0	ENST00000377045.4:c.890G>A	p.Arg297Gln	p.R297Q	ENST00000377045	NM_001654.4	297	cGg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242483	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACA	AATTAAGAGAAGCAACA	TTGCT			P-0008665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	43	465	0	ENST00000275493.2:c.2237_2253delinsTTGCT	p.Glu746_Thr751delinsValAla	p.E746_T751delinsVA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACA/gTTGCT																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465373	120465373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	94	475	0	ENST00000256646.2:c.4888C>T	p.Arg1630Cys	p.R1630C	ENST00000256646	NM_024408.3	1630	Cgc/Tgc																																																																															
IRF4	3662	MSKCC	GRCh37	6	395894	395894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1310	102	716	0	ENST00000380956.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000380956	NM_001195286.1	151	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	744	649	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112173831	112173831	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	345	384	0	ENST00000257430.4:c.2544del	p.Asp849IlefsTer12	p.D849Ifs*12	ENST00000257430	NM_000038.5	847	gAa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579410	7579410	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	466	364	0	ENST00000269305.4:c.277del	p.Leu93CysfsTer30	p.L93Cfs*30	ENST00000269305	NM_001126112.2	93	Ctg/tg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46743931	46743931	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	371	344	0	ENST00000371975.4:c.2221G>T	p.Glu741Ter	p.E741*	ENST00000371975	NM_003579.3	741	Gag/Tag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212522516	212522516	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	313	406	0	ENST00000342788.4:c.1909C>A	p.Pro637Thr	p.P637T	ENST00000342788	NM_005235.2	637	Cca/Aca																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259568	89259568	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	236	257	0	ENST00000336596.2:c.712G>T	p.Asp238Tyr	p.D238Y	ENST00000336596	NM_005233.5	238	Gat/Tat																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143352393	143352393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	406	494	0	ENST00000262992.4:c.20G>T	p.Gly7Val	p.G7V	ENST00000262992	NM_001101669.1	7	gGg/gTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627795	187627795	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	524	591	0	ENST00000441802.2:c.3187G>C	p.Ala1063Pro	p.A1063P	ENST00000441802	NM_005245.3	1063	Gcc/Ccc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289211	33289211	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	338	302	0	ENST00000374542.5:c.341C>G	p.Ser114Cys	p.S114C	ENST00000374542	NM_001141970.1	114	tCt/tGt																																																																															
MET	4233	MSKCC	GRCh37	7	116340120	116340120	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	305	334	0	ENST00000397752.3:c.982C>T	p.Gln328Ter	p.Q328*	ENST00000397752	NM_000245.2	328	Cag/Tag																																																																															
MLL3	58508	MSKCC	GRCh37	7	151919103	151919103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	252	465	0	ENST00000262189.6:c.3482C>T	p.Thr1161Ile	p.T1161I	ENST00000262189	NM_170606.2	1161	aCa/aTa																																																																															
PAX5	5079	MSKCC	GRCh37	9	36840625	36840625	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			122	382	377	0	ENST00000358127.4:c.1108T>A	p.Tyr370Asn	p.Y370N	ENST00000358127	NM_001280556.1	370	Tac/Aac																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98247991	98247991	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138034434		P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	83	367	2	ENST00000331920.6:c.560G>A	p.Arg187His	p.R187H	ENST00000331920	NM_000264.3	187	cGt/cAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903688	114903688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1069	1651	884	0	ENST00000543371.1:c.692C>T	p.Pro231Leu	p.P231L	ENST00000543371	NM_001198531.1	231	cCa/cTa																																																																															
POLE	5426	MSKCC	GRCh37	12	133226335	133226335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	706	665	0	ENST00000320574.5:c.3723G>T	p.Glu1241Asp	p.E1241D	ENST00000320574	NM_006231.2	1241	gaG/gaT																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570044	95570044	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	472	604	0	ENST00000343455.3:c.3689A>T	p.Gln1230Leu	p.Q1230L	ENST00000343455	NM_177438.2	1230	cAg/cTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95578509	95578509	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	212	344	2	ENST00000343455.3:c.2116G>T	p.Gly706Cys	p.G706C	ENST00000343455	NM_177438.2	706	Ggc/Tgc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678515	88678515	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	374	446	0	ENST00000360948.2:c.1021C>A	p.Pro341Thr	p.P341T	ENST00000360948	NM_001012338.2	341	Cct/Act																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992532	72992532	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1543	1050	1174	0	ENST00000268489.5:c.1513G>T	p.Asp505Tyr	p.D505Y	ENST00000268489	NM_006885.3	505	Gac/Tac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602667	10602667	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	524	447	1	ENST00000171111.5:c.911T>A	p.Ile304Asn	p.I304N	ENST00000171111	NM_203500.1	304	aTc/aAc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65312381	65312387	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGACC	GGAGACC	-			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	58	362	0	ENST00000342505.4:c.1932_1938del	p.Gln644HisfsTer57	p.Q644Hfs*57	ENST00000342505	NM_002227.2	644	caGGTCTCC/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0008736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	164	461	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0008736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	501	765	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11300374	11300374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	67	281	0	ENST00000361445.4:c.1772G>A	p.Ser591Asn	p.S591N	ENST00000361445	NM_004958.3	591	aGc/aAc																																																																															
MPL	4352	MSKCC	GRCh37	1	43803818	43803818	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147938568		P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	225	707	0	ENST00000372470.3:c.128G>A	p.Arg43Gln	p.R43Q	ENST00000372470	NM_005373.2	43	cGa/cAa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466341	120466341	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	178	586	0	ENST00000256646.2:c.4778A>C	p.Tyr1593Ser	p.Y1593S	ENST00000256646	NM_024408.3	1593	tAt/tCt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120497816	120497816	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	98	342	0	ENST00000256646.2:c.2066A>G	p.Asn689Ser	p.N689S	ENST00000256646	NM_024408.3	689	aAt/aGt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849863	156849863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	112	622	1	ENST00000524377.1:c.2119G>A	p.Glu707Lys	p.E707K	ENST00000524377	NM_002529.3	707	Gag/Aag																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111021	193111021	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	43	423	0	ENST00000367435.3:c.554T>C	p.Ile185Thr	p.I185T	ENST00000367435	NM_024529.4	185	aTc/aCc																																																																															
ALK	238	MSKCC	GRCh37	2	30143010	30143010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	231	777	1	ENST00000389048.3:c.516G>T	p.Glu172Asp	p.E172D	ENST00000389048	NM_004304.4	172	gaG/gaT																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	350	547	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138433447	138433447	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	123	641	0	ENST00000289153.2:c.1165A>G	p.Ile389Val	p.I389V	ENST00000289153	NM_006219.2	389	Att/Gtt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	208	1092	2	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1807506	1807506	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768385286		P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	248	743	0	ENST00000260795.2:c.1675G>A	p.Ala559Thr	p.A559T	ENST00000260795		559	Gcc/Acc																																																																															
TET2	54790	MSKCC	GRCh37	4	106157674	106157674	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	48	602	0	ENST00000380013.4:c.2575A>G	p.Thr859Ala	p.T859A	ENST00000380013	NM_001127208.2	859	Acc/Gcc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	145	656	1	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149499641	149499641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	129	666	0	ENST00000261799.4:c.2632A>G	p.Ser878Gly	p.S878G	ENST00000261799	NM_002609.3	878	Agc/Ggc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910708	29910708	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	243	739	0	ENST00000376809.5:c.248A>G	p.Tyr83Cys	p.Y83C	ENST00000376809	NM_002116.7	83	tAt/tGt																																																																															
PIM1	5292	MSKCC	GRCh37	6	37141761	37141761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	197	614	1	ENST00000373509.5:c.836C>A	p.Pro279Gln	p.P279Q	ENST00000373509	NM_002648.3	279	cCa/cAa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150016221	150016221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	82	651	2	ENST00000253339.5:c.485G>A	p.Ser162Asn	p.S162N	ENST00000253339		162	aGc/aAc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976804	2976804	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	256	921	0	ENST00000396946.4:c.1208A>G	p.Tyr403Cys	p.Y403C	ENST00000396946	NM_032415.4	403	tAc/tGc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98238356	98238356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	147	516	2	ENST00000331920.6:c.1688C>T	p.Ala563Val	p.A563V	ENST00000331920	NM_000264.3	563	gCg/gTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	136	533	1	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925567	114925567	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1391	218	1115	1	ENST00000543371.1:c.1645G>T	p.Ala549Ser	p.A549S	ENST00000543371	NM_001198531.1	549	Gcc/Tcc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246384	46246384	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	89	647	0	ENST00000334344.6:c.4478T>C	p.Val1493Ala	p.V1493A	ENST00000334344	NM_152641.2	1493	gTa/gCa																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811723	102811723	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	204	891	0	ENST00000307046.8:c.461A>G	p.Lys154Arg	p.K154R	ENST00000307046	NM_001111285.1	154	aAg/aGg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112623	115112623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	33	352	0	ENST00000257566.3:c.1117G>A	p.Gly373Ser	p.G373S	ENST00000257566	NM_016569.3	373	Ggt/Agt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991727	72991727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	43	414	1	ENST00000268489.5:c.2318C>T	p.Ala773Val	p.A773V	ENST00000268489	NM_006885.3	773	gCg/gTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348800	89348800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1756	257	1489	3	ENST00000301030.4:c.4150G>A	p.Gly1384Ser	p.G1384S	ENST00000301030	NM_001256183.1	1384	Ggt/Agt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37864647	37864647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	237	719	1	ENST00000269571.5:c.299G>A	p.Arg100Gln	p.R100Q	ENST00000269571		100	cGg/cAg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40500444	40500444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	293	712	0	ENST00000264657.5:c.91C>T	p.Arg31Trp	p.R31W	ENST00000264657	NM_139276.2	31	Cgg/Tgg																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56811512	56811512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	81	620	0	ENST00000337432.4:c.1060G>A	p.Ala354Thr	p.A354T	ENST00000337432	NM_058216.2	354	Gca/Aca																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78935253	78935253	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143802144		P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	238	647	0	ENST00000306801.3:c.3665G>A	p.Arg1222His	p.R1222H	ENST00000306801	NM_020761.2	1222	cGt/cAt																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4101040	4101040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	116	329	0	ENST00000262948.5:c.682G>A	p.Val228Met	p.V228M	ENST00000262948	NM_030662.3	228	Gtg/Atg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170774	11170774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	109	577	0	ENST00000344626.4:c.4822C>T	p.Arg1608Trp	p.R1608W	ENST00000344626	NM_003072.3	1608	Cgg/Tgg																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792725	33792725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	199	126	1	ENST00000498907.2:c.596C>T	p.Ala199Val	p.A199V	ENST00000498907	NM_004364.3	199	gCg/gTg																																																																															
CIC	23152	MSKCC	GRCh37	19	42798142	42798142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1467	117	696	0	ENST00000575354.2:c.4096C>T	p.Arg1366Trp	p.R1366W	ENST00000575354	NM_015125.3	1366	Cgg/Tgg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226124	53226124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	167	596	0	ENST00000375401.3:c.2725C>T	p.Arg909Trp	p.R909W	ENST00000375401	NM_004187.3	909	Cgg/Tgg																																																																															
ATRX	546	MSKCC	GRCh37	X	76944402	76944402	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	62	726	0	ENST00000373344.5:c.503T>G	p.Ile168Ser	p.I168S	ENST00000373344	NM_000489.3	168	aTt/aGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845573	72845574	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1234	276	1068	2	ENST00000268489.5:c.3766dup	p.Leu1256ProfsTer25	p.L1256Pfs*25	ENST00000268489	NM_006885.3	1256	ctg/cCtg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912302	29912303	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	46	515	0	ENST00000376809.5:c.922dup	p.Ile308AsnfsTer32	p.I308Nfs*32	ENST00000376809	NM_002116.7	307	-/A																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	59	264	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	585	895	10	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239971	98239971	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	46	214	0	ENST00000331920.6:c.1361del	p.Cys454PhefsTer2	p.C454Ffs*2	ENST00000331920	NM_000264.3	454	tGt/tt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	153	603	2	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	185	706	2	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	151	434	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	169	566	0	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276860	15276861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs753725730		P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	129	421	2	ENST00000263388.2:c.5404dup	p.Ala1802GlyfsTer8	p.A1802Gfs*8	ENST00000263388	NM_000435.2	1802	gct/gGct																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097625	11097625	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	161	915	2	ENST00000344626.4:c.810delC	p.Met272CysfsTer31	p.M272Cfs*31	ENST00000344626	NM_003072.3	269	Ccc/cc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643943	52643943	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	86	395	0	ENST00000394830.3:c.1953delA	p.Lys651AsnfsTer5	p.K651Nfs*5	ENST00000394830	NM_018313.4	651	aaA/aa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405954	157405954	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	166	588	3	ENST00000346085.5:c.2201del	p.Gly734AlafsTer11	p.G734Afs*11	ENST00000346085	NM_020732.3	732	ccG/cc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0008756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	182	372	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
MLL3	58508	MSKCC	GRCh37	7	151945474	151945474	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0008756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	178	332	0	ENST00000262189.6:c.2045C>G	p.Ser682Ter	p.S682*	ENST00000262189	NM_170606.2	682	tCa/tGa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692896	89692896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	234	281	0	ENST00000371953.3:c.380G>A	p.Gly127Glu	p.G127E	ENST00000371953	NM_000314.4	127	gGa/gAa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47084094	47084094	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	437	448	0	ENST00000409792.3:c.7195C>T	p.Arg2399Ter	p.R2399*	ENST00000409792	NM_014159.6	2399	Cga/Tga																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139815562	139815562	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1294	445	809	1	ENST00000247668.2:c.1033A>T	p.Met345Leu	p.M345L	ENST00000247668	NM_021138.3	345	Atg/Ttg																																																																															
ATM	472	MSKCC	GRCh37	11	108142099	108142099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	210	521	0	ENST00000278616.4:c.3043C>T	p.Gln1015Ter	p.Q1015*	ENST00000278616	NM_000051.3	1015	Caa/Taa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830911	72830911	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1655	531	1055	0	ENST00000268489.5:c.5670G>C	p.Gln1890His	p.Q1890H	ENST00000268489	NM_006885.3	1890	caG/caC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0008786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	643	240	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200749	128200749	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0008786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	755	246	0	ENST00000341105.2:c.1056T>A	p.Cys352Ter	p.C352*	ENST00000341105	NM_032638.4	352	tgT/tgA																																																																															
RB1	5925	MSKCC	GRCh37	13	48916756	48916756	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0008786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			28	383	184	0	ENST00000267163.4:c.286A>T	p.Lys96Ter	p.K96*	ENST00000267163	NM_000321.2	96	Aag/Tag																																																																															
BBC3	27113	MSKCC	GRCh37	19	47725119	47725119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	419	312	0	ENST00000449228.1:c.625C>T	p.His209Tyr	p.H209Y	ENST00000449228	NM_001127240.2	209	Cat/Tat																																																																															
MED12	9968	MSKCC	GRCh37	X	70338668	70338668	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	1147	175	0	ENST00000374080.3:c.66del	p.Asp23MetfsTer14	p.D23Mfs*14	ENST00000374080		22	Ccc/cc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0008850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	191	227	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128051234	128051234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	293	433	0	ENST00000285398.2:c.89C>T	p.Pro30Leu	p.P30L	ENST00000285398	NM_000122.1	30	cCg/cTg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874607	35874607	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1346	462	527	0	ENST00000303115.3:c.763C>A	p.Leu255Met	p.L255M	ENST00000303115	NM_002185.3	255	Ctg/Atg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602923	10602923	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	227	370	0	ENST00000171111.5:c.655G>C	p.Glu219Gln	p.E219Q	ENST00000171111	NM_203500.1	219	Gag/Cag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971139	21971150	+	inframe_deletion	In_Frame_Del	DEL	GGCGCAGTTGGG	GGCGCAGTTGGG	-			P-0008850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	167	148	0	ENST00000304494.5:c.208_219del	p.Pro70_Ala73del	p.P70_A73del	ENST00000304494	NM_000077.4	70	CCCAACTGCGCC/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578459	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	408	333	0	ENST00000269305.4:c.471_472insT	p.Arg158SerfsTer23	p.R158Sfs*23	ENST00000269305	NM_001126112.2	157	-/T																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	173	464	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578213	7578214	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-	rs1131691030		P-0008911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	207	673	0	ENST00000269305.4:c.635_636del	p.Phe212SerfsTer3	p.F212Sfs*3	ENST00000269305	NM_001126112.2	212	tTT/t																																																																															
RET	5979	MSKCC	GRCh37	10	43572717	43572717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	78	219	1	ENST00000355710.3:c.11C>T	p.Ala4Val	p.A4V	ENST00000355710	NM_020975.4	4	gCg/gTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70347217	70347217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	250	785	2	ENST00000374080.3:c.2881C>T	p.Arg961Trp	p.R961W	ENST00000374080		961	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492716	56492716	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	127	685	0	ENST00000407977.2:c.223del	p.Ile75Ter	p.I75*	ENST00000407977		75	Ata/ta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	391	440	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577506	7577507	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	241	400	1	ENST00000269305.4:c.774dup	p.Asp259ArgfsTer5	p.D259Rfs*5	ENST00000269305	NM_001126112.2	258	-/A																																																																															
FAT1	2195	MSKCC	GRCh37	4	187522476	187522476	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	347	656	0	ENST00000441802.2:c.11587T>C	p.Ser3863Pro	p.S3863P	ENST00000441802	NM_005245.3	3863	Tcc/Ccc																																																																															
MLL3	58508	MSKCC	GRCh37	7	151945382	151945382	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	94	205	0	ENST00000262189.6:c.2137del	p.Glu713AsnfsTer5	p.E713Nfs*5	ENST00000262189	NM_170606.2	713	Gaa/aa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0008941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	210	249	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	333	542	0	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	348	454	0	ENST00000269305.4:c.430del	p.Gln144SerfsTer26	p.Q144Sfs*26	ENST00000269305	NM_001126112.2	144	Cag/ag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112442	115112442	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	47	302	0	ENST00000257566.3:c.1298C>G	p.Pro433Arg	p.P433R	ENST00000257566	NM_016569.3	433	cCc/cGc																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733086	74733086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	228	556	0	ENST00000359995.5:c.157G>A	p.Glu53Lys	p.E53K	ENST00000359995	NM_001195427.1	53	Gag/Aag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245842	41245849	+	frameshift_variant	Frame_Shift_Del	DEL	TTAGGATT	TTAGGATT	-			P-0008941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	343	496	0	ENST00000357654.3:c.1699_1706del	p.Asn567ProfsTer16	p.N567Pfs*16	ENST00000357654	NM_007294.3	567	AATCCTAAc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0008961-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	271	358	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52595933	52595933	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0008961-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	423	505	0	ENST00000394830.3:c.3982A>T	p.Lys1328Ter	p.K1328*	ENST00000394830	NM_018313.4	1328	Aaa/Taa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44923032	44923032	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008961-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	241	433	0	ENST00000377967.4:c.1893del	p.Trp632GlyfsTer59	p.W632Gfs*59	ENST00000377967	NM_021140.2	631	ccG/cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0009002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	126	639	1	ENST00000269305.4:c.560-2A>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
RAD54L	8438	MSKCC	GRCh37	1	46714233	46714233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	120	601	1	ENST00000371975.4:c.53G>T	p.Arg18Met	p.R18M	ENST00000371975	NM_003579.3	18	aGg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0009012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	241	327	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0009012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	127	305	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535441	66535441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	62	150	2	ENST00000273854.3:c.20G>A	p.Arg7Gln	p.R7Q	ENST00000273854	NM_004439.5	7	cGg/cAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401004	139401004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	45	325	1	ENST00000277541.6:c.3989G>A	p.Arg1330His	p.R1330H	ENST00000277541	NM_017617.3	1330	cGc/cAc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	465607	465607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	246	438	0	ENST00000399788.2:c.769G>A	p.Asp257Asn	p.D257N	ENST00000399788	NM_001042603.1	257	Gat/Aat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32890665	32890665	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0009012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	62	254	0	ENST00000380152.3:c.67+1G>T		p.X23_splice	ENST00000380152		23																																																																																
APC	324	MSKCC	GRCh37	5	112173756	112173756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	107	343	0	ENST00000257430.4:c.2467del	p.Ser823HisfsTer4	p.S823Hfs*4	ENST00000257430	NM_000038.5	822	cTt/ct																																																																															
APC	324	MSKCC	GRCh37	5	112175751	112175752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	125	239	0	ENST00000257430.4:c.4463dup	p.Leu1488PhefsTer26	p.L1488Ffs*26	ENST00000257430	NM_000038.5	1487	act/acTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	525	499	1	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
NF1	4763	MSKCC	GRCh37	17	29508487	29508487	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	256	706	0	ENST00000358273.4:c.634G>C	p.Val212Leu	p.V212L	ENST00000358273	NM_001042492.2	212	Gtt/Ctt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023996	31023996	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	267	548	0	ENST00000375687.4:c.3481A>G	p.Met1161Val	p.M1161V	ENST00000375687	NM_015338.5	1161	Atg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009045-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	695	417	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0009045-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	568	542	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0009058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	226	355	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0009058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	334	363	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	286	364	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277275	41277275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	196	422	0	ENST00000349496.5:c.1744C>T	p.Arg582Trp	p.R582W	ENST00000349496	NM_001904.3	582	Cgg/Tgg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967853	93967853	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1144	64	816	4	ENST00000369303.4:c.2074C>A	p.Pro692Thr	p.P692T	ENST00000369303	NM_004440.3	692	Ccg/Acg																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38287320	38287320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	416	470	1	ENST00000425967.3:c.337C>T	p.Arg113Cys	p.R113C	ENST00000425967	NM_001174067.1	113	Cgc/Tgc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67569236	67569247	+	inframe_deletion	In_Frame_Del	DEL	TTGCAGAGCAGT	TTGCAGAGCAGT	-			P-0009058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	194	481	0	ENST00000274335.5:c.357_368del	p.Glu120_Ala123del	p.E120_A123del	ENST00000274335		118	cTTGCAGAGCAGTtt/ctt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0009068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	711	396	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
CIC	23152	MSKCC	GRCh37	19	42794527	42794527	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201728833		P-0009068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	339	563	1	ENST00000575354.2:c.1607C>T	p.Ala536Val	p.A536V	ENST00000575354	NM_015125.3	536	gCg/gTg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468511	89468511	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	275	395	0	ENST00000336596.2:c.2045T>A	p.Ile682Asn	p.I682N	ENST00000336596	NM_005233.5	682	aTc/aAc																																																																															
PARP1	142	MSKCC	GRCh37	1	226573215	226573215	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	90	470	1	ENST00000366794.5:c.1001T>A	p.Val334Glu	p.V334E	ENST00000366794	NM_001618.3	334	gTa/gAa																																																																															
CUL3	8452	MSKCC	GRCh37	2	225346787	225346787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	180	315	0	ENST00000264414.4:c.1851G>T	p.Gln617His	p.Q617H	ENST00000264414	NM_003590.4	617	caG/caT																																																																															
MLH1	4292	MSKCC	GRCh37	3	37058996	37058996	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0009068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	435	356	0	ENST00000231790.2:c.791-1G>C		p.X264_splice	ENST00000231790	NM_000249.3	264																																																																																
FAT1	2195	MSKCC	GRCh37	4	187549779	187549779	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0009068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	148	385	0	ENST00000441802.2:c.4462A>T	p.Lys1488Ter	p.K1488*	ENST00000441802	NM_005245.3	1488	Aaa/Taa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35857110	35857110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	252	512	0	ENST00000303115.3:c.31G>A	p.Val11Ile	p.V11I	ENST00000303115	NM_002185.3	11	Gtt/Att																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157517357	157517357	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	226	507	2	ENST00000346085.5:c.3921G>T	p.Gln1307His	p.Q1307H	ENST00000346085	NM_020732.3	1307	caG/caT																																																																															
PAK1	5058	MSKCC	GRCh37	11	77066751	77066751	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1400	283	556	0	ENST00000356341.3:c.734A>G	p.Lys245Arg	p.K245R	ENST00000356341	NM_002576.4	245	aAg/aGg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94219106	94219106	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	224	383	0	ENST00000323929.3:c.298A>G	p.Asn100Asp	p.N100D	ENST00000323929	NM_005591.3	100	Aac/Gac																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134286	41134286	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1342	491	878	2	ENST00000379561.5:c.1342A>T	p.Ser448Cys	p.S448C	ENST00000379561	NM_002015.3	448	Agt/Tgt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81557432	81557432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			987	343	504	0	ENST00000298171.2:c.412C>T	p.Leu138Phe	p.L138F	ENST00000298171	NM_000369.2	138	Ctt/Ttt																																																																															
BLM	641	MSKCC	GRCh37	15	91326105	91326105	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	289	449	2	ENST00000355112.3:c.2609A>G	p.Lys870Arg	p.K870R	ENST00000355112	NM_000057.2	870	aAg/aGg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992873	72992873	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	358	693	1	ENST00000268489.5:c.1172A>G	p.Gln391Arg	p.Q391R	ENST00000268489	NM_006885.3	391	cAg/cGg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78857238	78857238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1074	286	487	0	ENST00000306801.3:c.1604C>T	p.Thr535Met	p.T535M	ENST00000306801	NM_020761.2	535	aCg/aTg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39550380	39550380	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1180	247	444	0	ENST00000262039.4:c.491G>T	p.Ser164Ile	p.S164I	ENST00000262039	NM_002647.2	164	aGt/aTt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52709302	52709302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	133	383	2	ENST00000322088.6:c.256G>A	p.Val86Met	p.V86M	ENST00000322088	NM_014225.5	86	Gtg/Atg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021560	31021560	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	161	281	0	ENST00000375687.4:c.1559A>G	p.Lys520Arg	p.K520R	ENST00000375687	NM_015338.5	520	aAg/aGg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412341	63412341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	376	609	1	ENST00000330258.3:c.826C>A	p.Pro276Thr	p.P276T	ENST00000330258	NM_152424.3	276	Cct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	174	407	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0009098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	188	387	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
MITF	4286	MSKCC	GRCh37	3	69928323	69928323	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	61	349	0	ENST00000352241.4:c.143T>C	p.Ile48Thr	p.I48T	ENST00000352241	NM_198159.2	48	aTa/aCa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101125	41101125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	29	304	0	ENST00000373198.4:c.1231G>A	p.Gly411Ser	p.G411S	ENST00000373198	NM_133170.3	411	Ggc/Agc																																																																															
ATRX	546	MSKCC	GRCh37	X	76938758	76938758	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	58	550	0	ENST00000373344.5:c.1990T>G	p.Leu664Val	p.L664V	ENST00000373344	NM_000489.3	664	Ttg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0009139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	93	524	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	81	626	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																															
TERT	7015	MSKCC	GRCh37	5	1279464	1279464	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202123213		P-0009139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	38	457	0	ENST00000310581.5:c.2072G>A	p.Arg691His	p.R691H	ENST00000310581	NM_198253.2	691	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0009142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	205	447	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0009142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	384	410	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0009142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	137	238	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
APC	324	MSKCC	GRCh37	5	112155031	112155032	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	159	373	0	ENST00000257430.4:c.1307dup	p.Asn436LysfsTer8	p.N436Kfs*8	ENST00000257430	NM_000038.5	434	-/A																																																																															
HGF	3082	MSKCC	GRCh37	7	81372752	81372752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	162	417	0	ENST00000222390.5:c.782G>A	p.Arg261His	p.R261H	ENST00000222390	NM_000601.4	261	cGc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	41991306	41991306	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1220	298	794	0	ENST00000219905.7:c.2137G>C	p.Asp713His	p.D713H	ENST00000219905	NM_001164273.1	713	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579583	7579583	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	244	292	0	ENST00000269305.4:c.104T>A	p.Leu35Ter	p.L35*	ENST00000269305	NM_001126112.2	35	tTg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	314	400	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112175521	112175521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	135	467	0	ENST00000257430.4:c.4230C>A	p.Cys1410Ter	p.C1410*	ENST00000257430	NM_000038.5	1410	tgC/tgA																																																																															
ROS1	6098	MSKCC	GRCh37	6	117687425	117687425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	94	459	0	ENST00000368508.3:c.2626G>A	p.Ala876Thr	p.A876T	ENST00000368508	NM_002944.2	876	Gca/Aca																																																																															
MLL2	8085	MSKCC	GRCh37	12	49432033	49432033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1327	109	715	0	ENST00000301067.7:c.9106C>T	p.Pro3036Ser	p.P3036S	ENST00000301067	NM_003482.3	3036	Ccc/Tcc																																																																															
MLL2	8085	MSKCC	GRCh37	12	49443478	49443478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	175	403	0	ENST00000301067.7:c.3893C>A	p.Ser1298Tyr	p.S1298Y	ENST00000301067	NM_003482.3	1298	tCc/tAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964099	28964099	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			938	141	626	1	ENST00000282397.4:c.1803C>A	p.His601Gln	p.H601Q	ENST00000282397	NM_002019.4	601	caC/caA																																																																															
APC	324	MSKCC	GRCh37	5	112116534	112116534	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	173	597	0	ENST00000257430.4:c.580del	p.Arg194GlyfsTer11	p.R194Gfs*11	ENST00000257430	NM_000038.5	193	gcA/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	160	355	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0009169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	343	362	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440904	56440904	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1458799446		P-0009169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	409	356	2	ENST00000407977.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000407977		145	Cga/Tga																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012465	29012465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	159	288	0	ENST00000282397.4:c.406G>A	p.Val136Ile	p.V136I	ENST00000282397	NM_002019.4	136	Gta/Ata																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114917829	114917830	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0009169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	394	468	0	ENST00000543371.1:c.1318+2dup		p.X440_splice	ENST00000543371	NM_001198531.1	440																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0009185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	211	448	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0009185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	224	429	1	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106508843	106508843	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	246	377	0	ENST00000359195.3:c.837G>T	p.Glu279Asp	p.E279D	ENST00000359195	NM_002649.2	279	gaG/gaT																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741886	17741886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	36	61	0	ENST00000250003.3:c.557C>T	p.Pro186Leu	p.P186L	ENST00000250003	NM_002478.4	186	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112175283	112175284	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	172	400	0	ENST00000257430.4:c.3994dupA	p.Thr1332AsnfsTer10	p.T1332Nfs*10	ENST00000257430	NM_000038.5	1331	aga/agAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0009200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	628	296	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0009200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	888	268	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022592	31022592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	302	294	1	ENST00000375687.4:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000375687	NM_015338.5	693	Cga/Tga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098657	47098657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	290	289	0	ENST00000409792.3:c.6617C>T	p.Ala2206Val	p.A2206V	ENST00000409792	NM_014159.6	2206	gCt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	267	1018	0	ENST00000269305.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000269305	NM_001126112.2	273	Cgt/Agt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524321	176524321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	104	764	0	ENST00000292408.4:c.2182G>A	p.Ala728Thr	p.A728T	ENST00000292408	NM_213647.1	728	Gca/Aca																																																																															
PARP1	142	MSKCC	GRCh37	1	226564873	226564873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	207	945	1	ENST00000366794.5:c.1877G>T	p.Trp626Leu	p.W626L	ENST00000366794	NM_001618.3	626	tGg/tTg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47672693	47672693	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	172	766	0	ENST00000233146.2:c.1283A>T	p.His428Leu	p.H428L	ENST00000233146	NM_000251.2	428	cAc/cTc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198288604	198288604	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	98	1051	0	ENST00000335508.6:c.123G>T	p.Gln41His	p.Q41H	ENST00000335508	NM_012433.2	41	caG/caT																																																																															
MITF	4286	MSKCC	GRCh37	3	70014208	70014208	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1595	407	1301	0	ENST00000352241.4:c.1372G>T	p.Gly458Trp	p.G458W	ENST00000352241	NM_198159.2	458	Ggg/Tgg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89156957	89156957	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	204	728	1	ENST00000336596.2:c.59G>T	p.Gly20Val	p.G20V	ENST00000336596	NM_005233.5	20	gGg/gTg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204941	128204941	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	203	966	0	ENST00000341105.2:c.500G>C	p.Gly167Ala	p.G167A	ENST00000341105	NM_032638.4	167	gGc/gCc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664718	138664718	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	39	152	0	ENST00000330315.3:c.847G>T	p.Ala283Ser	p.A283S	ENST00000330315	NM_023067.3	283	Gca/Tca																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99823049	99823049	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	84	649	0	ENST00000280892.6:c.163A>G	p.Ile55Val	p.I55V	ENST00000280892	NM_001130678.1	55	Att/Gtt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081621	143081621	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	79	742	0	ENST00000262992.4:c.1453C>A	p.Pro485Thr	p.P485T	ENST00000262992	NM_001101669.1	485	Cca/Aca																																																																															
SDHA	6389	MSKCC	GRCh37	5	236597	236597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	75	263	0	ENST00000264932.6:c.1315G>T	p.Gly439Trp	p.G439W	ENST00000264932	NM_004168.2	439	Ggg/Tgg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38964909	38964909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	91	468	0	ENST00000357387.3:c.1385C>T	p.Pro462Leu	p.P462L	ENST00000357387	NM_152756.3	462	cCc/cTc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520545	176520545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	88	626	0	ENST00000292408.4:c.1390C>T	p.Arg464Trp	p.R464W	ENST00000292408	NM_213647.1	464	Cgg/Tgg																																																																															
IRF4	3662	MSKCC	GRCh37	6	395873	395873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	114	877	0	ENST00000380956.4:c.430C>A	p.Pro144Thr	p.P144T	ENST00000380956	NM_001195286.1	144	Ccg/Acg																																																																															
IRF4	3662	MSKCC	GRCh37	6	395895	395895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	120	837	0	ENST00000380956.4:c.452C>T	p.Pro151Leu	p.P151L	ENST00000380956	NM_001195286.1	151	cCc/cTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163564	32163564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	171	626	1	ENST00000375023.3:c.5662G>T	p.Ala1888Ser	p.A1888S	ENST00000375023	NM_004557.3	1888	Gcg/Tcg																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652242	36652242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753529000		P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	88	545	0	ENST00000244741.5:c.364C>T	p.Arg122Cys	p.R122C	ENST00000244741	NM_000389.4	122	Cgc/Tgc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93969075	93969075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	81	873	0	ENST00000369303.4:c.1921G>T	p.Ala641Ser	p.A641S	ENST00000369303	NM_004440.3	641	Gca/Tca																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157222598	157222598	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	181	677	2	ENST00000346085.5:c.1865A>G	p.His622Arg	p.H622R	ENST00000346085	NM_020732.3	622	cAc/cGc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984013	2984013	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	351	960	0	ENST00000396946.4:c.517C>A	p.Leu173Met	p.L173M	ENST00000396946	NM_032415.4	173	Ctg/Atg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504324	8504324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	270	742	1	ENST00000356435.5:c.1759G>T	p.Ala587Ser	p.A587S	ENST00000356435		587	Gca/Tca																																																																															
CCND1	595	MSKCC	GRCh37	11	69457799	69457799	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	155	600	0	ENST00000227507.2:c.199G>C	p.Val67Leu	p.V67L	ENST00000227507	NM_053056.2	67	Gtc/Ctc																																																																															
PGR	5241	MSKCC	GRCh37	11	100999641	100999641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1225	285	1275	0	ENST00000325455.5:c.161C>T	p.Ser54Phe	p.S54F	ENST00000325455	NM_001202474.3	54	tCc/tTc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110005	115110005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	68	534	2	ENST00000257566.3:c.1873C>A	p.Arg625Ser	p.R625S	ENST00000257566	NM_016569.3	625	Cgc/Agc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28913387	28913387	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	98	939	0	ENST00000282397.4:c.2406T>A	p.Asp802Glu	p.D802E	ENST00000282397	NM_002019.4	802	gaT/gaA																																																																															
MGA	23269	MSKCC	GRCh37	15	42019548	42019548	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	263	1185	1	ENST00000219905.7:c.3601A>T	p.Lys1201Ter	p.K1201*	ENST00000219905	NM_001164273.1	1201	Aaa/Taa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11169040	11169040	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	216	658	0	ENST00000344626.4:c.4533+1G>T		p.X1511_splice	ENST00000344626	NM_003072.3	1511																																																																																
PAK7	57144	MSKCC	GRCh37	20	9624818	9624818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	159	560	0	ENST00000353224.5:c.159G>T	p.Met53Ile	p.M53I	ENST00000353224	NM_177990.2	53	atG/atT																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624833	9624833	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	200	640	1	ENST00000353224.5:c.144C>A	p.Asn48Lys	p.N48K	ENST00000353224	NM_177990.2	48	aaC/aaA																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41408891	41408891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	294	819	0	ENST00000373198.4:c.535G>T	p.Val179Leu	p.V179L	ENST00000373198	NM_133170.3	179	Gtg/Ttg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53231106	53231106	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	299	457	0	ENST00000375401.3:c.1796G>T	p.Arg599Leu	p.R599L	ENST00000375401	NM_004187.3	599	cGt/cTt																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468028	50468029	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	107	538	0	ENST00000331340.3:c.1268_1269del	p.Arg423GlnfsTer65	p.R423Qfs*65	ENST00000331340	NM_006060.4	421	caCGcg/cacg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162725058	162725058	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	64	615	0	ENST00000367921.3:c.530del	p.Cys177LeufsTer2	p.C177Lfs*2	ENST00000367921	NM_006182.2	177	tGt/tt																																																																															
MLL3	58508	MSKCC	GRCh37	7	151845852	151845852	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	258	650	0	ENST00000262189.6:c.13160del	p.Gly4387AlafsTer26	p.G4387Afs*26	ENST00000262189	NM_170606.2	4387	gGc/gc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212652872	212652873	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	123	567	0	ENST00000342788.4:c.433_434delinsAT	p.Gly145Ile	p.G145I	ENST00000342788	NM_005235.2	145	GGt/ATt																																																																															
TET2	54790	MSKCC	GRCh37	4	106182927	106182928	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	151	763	0	ENST00000380013.4:c.3966_3967delinsTT	p.Glu1323Ter	p.E1323*	ENST00000380013	NM_001127208.2	1322	ctGGag/ctTTag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	354	447	1	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851850	134851850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	206	340	0	ENST00000398015.3:c.1256C>T	p.Pro419Leu	p.P419L	ENST00000398015	NM_004441.4	419	cCc/cTc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2985489	2985489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	251	508	0	ENST00000396946.4:c.322G>A	p.Gly108Arg	p.G108R	ENST00000396946	NM_032415.4	108	Ggg/Agg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273000	55273000	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	246	365	0	ENST00000275493.2:c.3323C>G	p.Pro1108Arg	p.P1108R	ENST00000275493	NM_005228.3	1108	cCt/cGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341806	8341806	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	247	485	0	ENST00000356435.5:c.4834G>C	p.Ala1612Pro	p.A1612P	ENST00000356435		1612	Gca/Cca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486288	8486288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	191	234	0	ENST00000356435.5:c.2529G>T	p.Trp843Cys	p.W843C	ENST00000356435		843	tgG/tgT																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741946	17741946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	28	66	0	ENST00000250003.3:c.617G>T	p.Cys206Phe	p.C206F	ENST00000250003	NM_002478.4	206	tGc/tTc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245582	46245582	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	242	291	0	ENST00000334344.6:c.3676G>T	p.Gly1226Ter	p.G1226*	ENST00000334344	NM_152641.2	1226	Gga/Tga																																																																															
FLT1	2321	MSKCC	GRCh37	13	29004236	29004236	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	343	430	0	ENST00000282397.4:c.1057T>C	p.Tyr353His	p.Y353H	ENST00000282397	NM_002019.4	353	Tac/Cac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866710	37866710	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	287	377	0	ENST00000269571.5:c.877G>C	p.Ala293Pro	p.A293P	ENST00000269571		293	Gcc/Ccc																																																																															
SRC	6714	MSKCC	GRCh37	20	36012741	36012741	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	72	124	1	ENST00000358208.4:c.185A>T	p.Lys62Met	p.K62M	ENST00000358208		62	aAg/aTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41568558	41568558	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	182	412	0	ENST00000263253.7:c.4508A>G	p.Tyr1503Cys	p.Y1503C	ENST00000263253	NM_001429.3	1503	tAt/tGt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39916468	39916468	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	390	502	0	ENST00000378444.4:c.4535T>C	p.Ile1512Thr	p.I1512T	ENST00000378444	NM_001123385.1	1512	aTt/aCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0009266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	362	466	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460516	149460516	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	254	364	1	ENST00000286301.3:c.121C>T	p.Arg41Ter	p.R41*	ENST00000286301	NM_005211.3	41	Cga/Tga																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509973	187509973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	332	366	0	ENST00000441802.2:c.13540G>C	p.Glu4514Gln	p.E4514Q	ENST00000441802	NM_005245.3	4514	Gaa/Caa																																																																															
MLL2	8085	MSKCC	GRCh37	12	49424521	49424521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	241	350	0	ENST00000301067.7:c.13702G>A	p.Ala4568Thr	p.A4568T	ENST00000301067	NM_003482.3	4568	Gct/Act																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992321	72992321	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	220	745	0	ENST00000268489.5:c.1724A>C	p.Glu575Ala	p.E575A	ENST00000268489	NM_006885.3	575	gAg/gCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	290	453	0	ENST00000269305.4:c.587G>C	p.Arg196Pro	p.R196P	ENST00000269305	NM_001126112.2	196	cGa/cCa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045149	47045149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	288	225	0	ENST00000329236.7:c.2156C>T	p.Ser719Leu	p.S719L	ENST00000329236	NM_001204466.1	719	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0009307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	163	363	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625219	69625219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	70	500	0	ENST00000334134.2:c.574C>T	p.Arg192Trp	p.R192W	ENST00000334134	NM_005247.2	192	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	144	311	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	315	243	0	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	524	236	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128016961	128016961	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	78	459	1	ENST00000285398.2:c.2128C>T	p.Gln710Ter	p.Q710*	ENST00000285398	NM_000122.1	710	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921364	178921364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	77	339	0	ENST00000263967.3:c.846G>A	p.Met282Ile	p.M282I	ENST00000263967	NM_006218.2	282	atG/atA																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922760	44922760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	116	405	0	ENST00000377967.4:c.1621C>T	p.Gln541Ter	p.Q541*	ENST00000377967	NM_021140.2	541	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0009330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	76	308	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0009330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	96	387	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118683	115118683	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0009330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	124	441	0	ENST00000257566.3:c.657+1G>T		p.X219_splice	ENST00000257566	NM_016569.3	219																																																																																
ARAF	369	MSKCC	GRCh37	X	47424198	47424198	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	117	543	0	ENST00000377045.4:c.203G>A	p.Arg68Gln	p.R68Q	ENST00000377045	NM_001654.4	68	cGa/cAa																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0009350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	449	261	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																															
MET	4233	MSKCC	GRCh37	7	116435732	116435732	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1318	71	355	0	ENST00000397752.3:c.3822G>T	p.Trp1274Cys	p.W1274C	ENST00000397752	NM_000245.2	1274	tgG/tgT																																																																															
BTK	695	MSKCC	GRCh37	X	100626631	100626631	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1278	94	661	0	ENST00000308731.7:c.299A>T	p.Tyr100Phe	p.Y100F	ENST00000308731	NM_000061.2	100	tAt/tTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045872	47045873	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0009350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	70	481	0	ENST00000329236.7:c.2434-1_2434delinsTT		p.X812_splice	ENST00000329236	NM_001204466.1	812																																																																																
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0009357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	267	337	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	30	361	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0009357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	320	350	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221821	55221821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1359	402	619	0	ENST00000275493.2:c.865G>A	p.Ala289Thr	p.A289T	ENST00000275493	NM_005228.3	289	Gcc/Acc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987260	2987260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	94	315	0	ENST00000396946.4:c.169G>A	p.Glu57Lys	p.E57K	ENST00000396946	NM_032415.4	57	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	666	341	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252994	36252995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	112	200	0	ENST00000300305.3:c.367dupG	p.Asp123GlyfsTer15	p.D123Gfs*15	ENST00000300305		123	gat/gGat																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163720	32163720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	90	141	0	ENST00000375023.3:c.5506G>C	p.Glu1836Gln	p.E1836Q	ENST00000375023	NM_004557.3	1836	Gag/Cag																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522551	176522551	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774571806		P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	150	326	0	ENST00000292408.4:c.1648G>A	p.Val550Met	p.V550M	ENST00000292408	NM_213647.1	550	Gtg/Atg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911266	29911266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	67	79	0	ENST00000376809.5:c.565G>A	p.Val189Met	p.V189M	ENST00000376809	NM_002116.7	189	Gtg/Atg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255388	16255388	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	217	403	0	ENST00000375759.3:c.2653G>C	p.Glu885Gln	p.E885Q	ENST00000375759	NM_015001.2	885	Gag/Cag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259513	16259513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	104	173	0	ENST00000375759.3:c.6778G>T	p.Glu2260Ter	p.E2260*	ENST00000375759	NM_015001.2	2260	Gag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262648	16262648	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	110	184	0	ENST00000375759.3:c.9913G>C	p.Glu3305Gln	p.E3305Q	ENST00000375759	NM_015001.2	3305	Gag/Cag																																																																															
PARP1	142	MSKCC	GRCh37	1	226578291	226578291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	183	315	0	ENST00000366794.5:c.437C>T	p.Pro146Leu	p.P146L	ENST00000366794	NM_001618.3	146	cCg/cTg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010522	48010522	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	76	110	0	ENST00000234420.5:c.150G>C	p.Trp50Cys	p.W50C	ENST00000234420	NM_000179.2	50	tgG/tgC																																																																															
ATR	545	MSKCC	GRCh37	3	142277586	142277586	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	149	269	0	ENST00000350721.4:c.1765G>C	p.Asp589His	p.D589H	ENST00000350721	NM_001184.3	589	Gat/Cat																																																																															
APC	324	MSKCC	GRCh37	5	112174481	112174481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	160	352	0	ENST00000257430.4:c.3190G>A	p.Glu1064Lys	p.E1064K	ENST00000257430	NM_000038.5	1064	Gag/Aag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030235	180030235	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	255	484	0	ENST00000261937.6:c.4049C>A	p.Ser1350Tyr	p.S1350Y	ENST00000261937	NM_182925.4	1350	tCc/tAc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2983888	2983888	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1142	269	502	1	ENST00000396946.4:c.642G>C	p.Glu214Asp	p.E214D	ENST00000396946	NM_032415.4	214	gaG/gaC																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970945	21970945	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	181	312	0	ENST00000304494.5:c.413G>C	p.Arg138Thr	p.R138T	ENST00000304494	NM_000077.4	138	aGa/aCa																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67201692	67201692	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1636	223	524	0	ENST00000312629.5:c.993G>T	p.Met331Ile	p.M331I	ENST00000312629	NM_003952.2	331	atG/atT																																																																															
ATM	472	MSKCC	GRCh37	11	108172469	108172469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	184	423	0	ENST00000278616.4:c.5272G>A	p.Asp1758Asn	p.D1758N	ENST00000278616	NM_000051.3	1758	Gat/Aat																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244959	46244959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1499	216	445	0	ENST00000334344.6:c.3053C>T	p.Ser1018Leu	p.S1018L	ENST00000334344	NM_152641.2	1018	tCa/tTa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287234	46287234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	137	268	2	ENST00000334344.6:c.5179C>A	p.Pro1727Thr	p.P1727T	ENST00000334344	NM_152641.2	1727	Cct/Act																																																																															
MLL2	8085	MSKCC	GRCh37	12	49431646	49431646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	171	310	0	ENST00000301067.7:c.9493G>A	p.Asp3165Asn	p.D3165N	ENST00000301067	NM_003482.3	3165	Gat/Aat																																																																															
MDM2	4193	MSKCC	GRCh37	12	69203022	69203022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1220	208	370	0	ENST00000462284.1:c.49G>A	p.Asp17Asn	p.D17N	ENST00000462284	NM_002392.5	17	Gat/Aat																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518199	103518199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	173	296	1	ENST00000355739.4:c.2137G>A	p.Glu713Lys	p.E713K	ENST00000355739	NM_000123.3	713	Gag/Aag																																																																															
MGA	23269	MSKCC	GRCh37	15	41961991	41961991	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1217	358	818	0	ENST00000219905.7:c.899C>G	p.Ser300Ter	p.S300*	ENST00000219905	NM_001164273.1	300	tCa/tGa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56792452	56792452	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	230	531	0	ENST00000308159.5:c.182C>T	p.Ser61Leu	p.S61L	ENST00000308159	NM_014669.4	61	tCa/tTa																																																																															
YES1	7525	MSKCC	GRCh37	18	724516	724516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	55	123	0	ENST00000314574.4:c.1540G>A	p.Asp514Asn	p.D514N	ENST00000314574	NM_005433.3	514	Gat/Aat																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231438	5231438	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1257	241	382	0	ENST00000357368.4:c.2038C>G	p.Gln680Glu	p.Q680E	ENST00000357368	NM_002850.3	680	Cag/Gag																																																																															
INSR	3643	MSKCC	GRCh37	19	7141690	7141690	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1042	136	326	0	ENST00000302850.5:c.2680G>A	p.Glu894Lys	p.E894K	ENST00000302850	NM_000208.2	894	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579709	7579710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	384	386	0	ENST00000269305.4:c.86dupA	p.Asn29LysfsTer14	p.N29Kfs*14	ENST00000269305	NM_001126112.2	29	aac/aaAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	196	383	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38274849	38274849	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	135	384	1	ENST00000425967.3:c.1731C>G	p.Asn577Lys	p.N577K	ENST00000425967	NM_001174067.1	577	aaC/aaG																																																																															
NF1	4763	MSKCC	GRCh37	17	29663730	29663730	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	71	481	2	ENST00000358273.4:c.6225G>A	p.Trp2075Ter	p.W2075*	ENST00000358273	NM_001042492.2	2075	tgG/tgA																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4099271	4099271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	134	492	1	ENST00000262948.5:c.847G>A	p.Val283Met	p.V283M	ENST00000262948	NM_030662.3	283	Gtg/Atg																																																																															
CDH1	999	MSKCC	GRCh37	16	68863688	68863688	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			74	92	248	1	ENST00000261769.5:c.2430del	p.Phe810LeufsTer6	p.F810Lfs*6	ENST00000261769	NM_004360.3	809	aaT/aa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56152506	56152506	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	159	373	0	ENST00000399503.3:c.564del	p.Lys188AsnfsTer2	p.K188Nfs*2	ENST00000399503	NM_005921.1	188	Aaa/aa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120756	115120756	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	198	455	1	ENST00000257566.3:c.250del	p.Gln84ArgfsTer4	p.Q84Rfs*4	ENST00000257566	NM_016569.3	84	Cag/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	71	477	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220400	1220400	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	62	605	1	ENST00000326873.7:c.493G>T	p.Glu165Ter	p.E165*	ENST00000326873	NM_000455.4	165	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112174347	112174347	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	54	378	0	ENST00000257430.4:c.3056G>C	p.Gly1019Ala	p.G1019A	ENST00000257430	NM_000038.5	1019	gGa/gCa																																																																															
MLL3	58508	MSKCC	GRCh37	7	151856117	151856117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	88	516	0	ENST00000262189.6:c.11501G>A	p.Gly3834Asp	p.G3834D	ENST00000262189	NM_170606.2	3834	gGc/gAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121846	2121846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	32	363	0	ENST00000219476.3:c.2008C>T	p.Pro670Ser	p.P670S	ENST00000219476	NM_000548.3	670	Cct/Tct																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732984	74732984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	50	511	0	ENST00000359995.5:c.259G>T	p.Val87Leu	p.V87L	ENST00000359995	NM_001195427.1	87	Gtg/Ttg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602522	10602522	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	39	375	1	ENST00000171111.5:c.1056G>A	p.Trp352Ter	p.W352*	ENST00000171111	NM_203500.1	352	tgG/tgA																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11136975	11136975	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0009370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	38	459	0	ENST00000344626.4:c.3169-1G>A		p.X1057_splice	ENST00000344626	NM_003072.3	1057																																																																																
MEN1	4221	MSKCC	GRCh37	11	64571968	64571974	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCTCA	CTTCTCA	-			P-0009370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	54	980	1	ENST00000337652.1:c.1680_1686del	p.Ser560ArgfsTer2	p.S560Rfs*2	ENST00000337652	NM_130803.2	560	agTGAGAAG/ag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101100	27101100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009374-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			710	296	516	1	ENST00000324856.7:c.4382G>A	p.Arg1461Gln	p.R1461Q	ENST00000324856	NM_006015.4	1461	cGa/cAa																																																																															
JUN	3725	MSKCC	GRCh37	1	59248360	59248360	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009374-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			235	83	195	0	ENST00000371222.2:c.383C>A	p.Pro128His	p.P128H	ENST00000371222	NM_002228.3	128	cCc/cAc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246130	41246130	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009374-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			897	214	599	0	ENST00000357654.3:c.1418A>G	p.Asn473Ser	p.N473S	ENST00000357654	NM_007294.3	473	aAc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0009421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	93	442	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0009421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	99	398	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128044453	128044453	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	38	387	0	ENST00000285398.2:c.1168T>A	p.Cys390Ser	p.C390S	ENST00000285398	NM_000122.1	390	Tgc/Agc																																																																															
MYC	4609	MSKCC	GRCh37	8	128750604	128750605	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAG			P-0009421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	46	400	0	ENST00000377970.2:c.154_156dup	p.Gln52dup	p.Q52dup	ENST00000377970	NM_002467.4	52	-/CAG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0009441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	90	168	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0009441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	207	424	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																															
KIT	3815	MSKCC	GRCh37	4	55604715	55604715	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373152714		P-0009441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	65	196	0	ENST00000288135.5:c.2923G>A	p.Asp975Asn	p.D975N	ENST00000288135	NM_000222.2	975	Gat/Aat																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453306	40453306	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1198	289	721	0	ENST00000345506.4:c.1003G>C	p.Glu335Gln	p.E335Q	ENST00000345506	NM_003152.3	335	Gag/Cag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5258030	5258030	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	76	266	0	ENST00000357368.4:c.704G>A	p.Arg235Gln	p.R235Q	ENST00000357368	NM_002850.3	235	cGa/cAa																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032094	26032095	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	G			P-0009441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1206	73	854	0	ENST00000244661.2:c.194_195delinsC	p.Lys65ThrfsTer26	p.K65Tfs*26	ENST00000244661	NM_003537.3	65	aAG/aC																																																																															
FLT3	2322	MSKCC	GRCh37	13	28599081	28599081	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0009448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	28	261	0	ENST00000241453.7:c.2208-1G>A		p.X736_splice	ENST00000241453	NM_004119.2	736																																																																																
TP53	7157	MSKCC	GRCh37	17	7572929	7572929	+	stop_lost	Nonstop_Mutation	SNP	A	A	C			P-0009448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	80	438	0	ENST00000269305.4:c.1180T>G	p.Ter394GlyextTer9	p.*394Gext*9	ENST00000269305	NM_001126112.2	394	Tga/Gga																																																																															
MED12	9968	MSKCC	GRCh37	X	70349240	70349240	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	53	271	0	ENST00000374080.3:c.3652G>C	p.Gly1218Arg	p.G1218R	ENST00000374080		1218	Gga/Cga																																																																															
STAT3	6774	MSKCC	GRCh37	17	40497639	40497640	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0009448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	72	564	0	ENST00000264657.5:c.309_310del	p.Ile104CysfsTer67	p.I104Cfs*67	ENST00000264657	NM_139276.2	103	cgGAtt/cgtt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0009464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	37	278	1	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0009464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	18	166	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041662	47041663	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0009464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	80	429	0	ENST00000329236.7:c.1653_1654delAG	p.Ala553ThrfsTer41	p.A553Tfs*41	ENST00000329236	NM_001204466.1	551	acAGgg/acgg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746017	162746017	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	43	274	0	ENST00000367921.3:c.2140C>T	p.Arg714Ter	p.R714*	ENST00000367921	NM_006182.2	714	Cga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248763	212248763	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	31	182	0	ENST00000342788.4:c.3504G>T	p.Glu1168Asp	p.E1168D	ENST00000342788	NM_005235.2	1168	gaG/gaT																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98242338	98242338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	41	285	1	ENST00000331920.6:c.980G>A	p.Cys327Tyr	p.C327Y	ENST00000331920	NM_000264.3	327	tGt/tAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591903	48591903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	62	360	0	ENST00000342988.3:c.1066C>T	p.Pro356Ser	p.P356S	ENST00000342988	NM_005359.5	356	Cct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	598	294	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0009532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	206	483	0	ENST00000269305.4:c.672G>C	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaC																																																																															
IRF4	3662	MSKCC	GRCh37	6	401642	401642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	103	318	0	ENST00000380956.4:c.964G>A	p.Asp322Asn	p.D322N	ENST00000380956	NM_001195286.1	322	Gac/Aac																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198273162	198273162	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1035	208	483	0	ENST00000335508.6:c.1048A>T	p.Thr350Ser	p.T350S	ENST00000335508	NM_012433.2	350	Act/Tct																																																																															
RASA1	5921	MSKCC	GRCh37	5	86633863	86633863	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1315	290	428	0	ENST00000274376.6:c.972A>T	p.Arg324Ser	p.R324S	ENST00000274376	NM_002890.2	324	agA/agT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053028	180053028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	129	307	0	ENST00000261937.6:c.1262C>T	p.Pro421Leu	p.P421L	ENST00000261937	NM_182925.4	421	cCc/cTc																																																																															
CCND3	896	MSKCC	GRCh37	6	41909370	41909370	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	74	130	0	ENST00000372991.4:c.18C>A	p.Cys6Ter	p.C6*	ENST00000372991	NM_001760.3	6	tgC/tgA																																																																															
RAD21	5885	MSKCC	GRCh37	8	117874132	117874132	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1501	277	497	0	ENST00000297338.2:c.322A>T	p.Ile108Phe	p.I108F	ENST00000297338	NM_006265.2	108	Att/Ttt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500979	8500979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	157	401	0	ENST00000356435.5:c.1903G>T	p.Val635Leu	p.V635L	ENST00000356435		635	Gtg/Ttg																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50479292	50479292	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	90	258	0	ENST00000394963.4:c.140G>T	p.Gly47Val	p.G47V	ENST00000394963	NM_003076.4	47	gGg/gTg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123204998	123204998	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0009532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	53	107	1	ENST00000218089.9:c.2359-1G>T		p.X787_splice	ENST00000218089	NM_001042749.1	787																																																																																
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0009535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1314	567	354	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	-			P-0009535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	1553	321	0	ENST00000275493.2:c.2237_2251del	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gca																																																																															
MED12	9968	MSKCC	GRCh37	X	70352765	70352765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	69	481	1	ENST00000374080.3:c.4486C>T	p.Arg1496Cys	p.R1496C	ENST00000374080		1496	Cgc/Tgc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14020502	14020502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	26	410	0	ENST00000311895.7:c.473G>A	p.Arg158His	p.R158H	ENST00000311895	NM_005236.2	158	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	46	348	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0009542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	35	379	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939043	36939043	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1511	90	553	0	ENST00000361632.4:c.666G>C	p.Met222Ile	p.M222I	ENST00000361632		222	atG/atC																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857611	9857611	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1065	85	314	0	ENST00000330684.3:c.3790G>T	p.Glu1264Ter	p.E1264*	ENST00000330684	NM_001134407.1	1264	Gag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880219	37880220	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC			P-0009555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	14	672	0	ENST00000269571.5:c.2263_2264delTTinsCC	p.Leu755Pro	p.L755P	ENST00000269571		755	TTg/CCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0009559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	452	331	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
ERG	2078	MSKCC	GRCh37	21	39817412	39817412	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200306085		P-0009559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	286	396	2	ENST00000288319.7:c.151G>A	p.Val51Ile	p.V51I	ENST00000288319	NM_182918.3	51	Gtc/Atc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281551	15281551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	764	505	2	ENST00000263388.2:c.4822G>A	p.Ala1608Thr	p.A1608T	ENST00000263388	NM_000435.2	1608	Gct/Act																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197824	66197824	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs200305031		P-0009559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	141	362	0	ENST00000273854.3:c.2875C>G	p.His959Asp	p.H959D	ENST00000273854	NM_004439.5	959	Cat/Gat																																																																															
STK11	6794	MSKCC	GRCh37	19	1222982	1222982	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0009559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	198	177	0	ENST00000326873.7:c.921-2A>G		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602763	10602763	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs774469695		P-0009559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	376	365	1	ENST00000171111.5:c.815G>T	p.Arg272Leu	p.R272L	ENST00000171111	NM_203500.1	272	cGc/cTc																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793208	33793208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	54	32	1	ENST00000498907.2:c.113G>A	p.Gly38Asp	p.G38D	ENST00000498907	NM_004364.3	38	gGc/gAc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123181311	123181311	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs774761933		P-0009559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	262	214	0	ENST00000218089.9:c.775C>T	p.Arg259Ter	p.R259*	ENST00000218089	NM_001042749.1	259	Cga/Tga																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226642	2226642	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	278	287	0	ENST00000398665.3:c.4122del	p.Asp1374GlufsTer6	p.D1374Efs*6	ENST00000398665	NM_032482.2	1374	gaC/ga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089463	27089463	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	108	380	0	ENST00000324856.7:c.2420-1G>C		p.X807_splice	ENST00000324856	NM_006015.4	807																																																																																
PMS1	5378	MSKCC	GRCh37	2	190732586	190732586	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	182	593	0	ENST00000441310.2:c.2404T>C	p.Tyr802His	p.Y802H	ENST00000441310	NM_000534.4	802	Tac/Cac																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147534	47147534	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	124	408	0	ENST00000409792.3:c.4792C>T	p.Arg1598Ter	p.R1598*	ENST00000409792	NM_014159.6	1598	Cga/Tga																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94124445	94124445	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1035	213	778	0	ENST00000369303.4:c.138G>C	p.Glu46Asp	p.E46D	ENST00000369303	NM_004440.3	46	gaG/gaC																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545561	106545561	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	312	426	0	ENST00000359195.3:c.3038G>T	p.Cys1013Phe	p.C1013F	ENST00000359195	NM_002649.2	1013	tGt/tTt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910852	114910852	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1106	267	914	0	ENST00000543371.1:c.971C>G	p.Ser324Cys	p.S324C	ENST00000543371	NM_001198531.1	324	tCc/tGc																																																																															
ATM	472	MSKCC	GRCh37	11	108178627	108178627	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	111	270	0	ENST00000278616.4:c.5678C>G	p.Ser1893Ter	p.S1893*	ENST00000278616	NM_000051.3	1893	tCa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	672	448	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799302	88799302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	128	554	1	ENST00000360948.2:c.83C>A	p.Ser28Tyr	p.S28Y	ENST00000360948	NM_001012338.2	28	tCc/tAc																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029431	14029431	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	89	352	0	ENST00000311895.7:c.1642A>C	p.Lys548Gln	p.K548Q	ENST00000311895	NM_005236.2	548	Aaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	237	446	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2214474	2214474	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	204	364	0	ENST00000398665.3:c.1802A>T	p.Lys601Met	p.K601M	ENST00000398665	NM_032482.2	601	aAg/aTg																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4101057	4101057	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	52	193	1	ENST00000262948.5:c.665C>A	p.Ser222Tyr	p.S222Y	ENST00000262948	NM_030662.3	222	tCc/tAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125566	47125567	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	A			P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	202	589	0	ENST00000409792.3:c.5703_5704delinsT	p.Glu1901AspfsTer12	p.E1901Dfs*12	ENST00000409792	NM_014159.6	1901	gaAGgc/gaTgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0009623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	3435	532	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ABL1	25	MSKCC	GRCh37	9	133759361	133759361	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	217	558	0	ENST00000318560.5:c.1684C>G	p.Leu562Val	p.L562V	ENST00000318560	NM_005157.4	562	Ctg/Gtg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47158145	47158145	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	205	562	0	ENST00000409792.3:c.4554del	p.Asp1519IlefsTer8	p.D1519Ifs*8	ENST00000409792	NM_014159.6	1518	gaA/ga																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967202	93967203	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0009623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	329	506	0	ENST00000369303.4:c.2149_2150delinsTT	p.Gly717Leu	p.G717L	ENST00000369303	NM_004440.3	717	GGa/TTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578428	7578431	+	stop_gained	Nonsense_Mutation	ONP	GCTG	GCTG	ACTA			P-0009623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	200	416	0	ENST00000269305.4:c.499_502delinsTAGT	p.Gln167_His168delinsTer	p.Q167_H168delins*	ENST00000269305	NM_001126112.2	167	CAGCac/TAGTac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	141	389	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398290	25398290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	136	365	1	ENST00000256078.4:c.29G>T	p.Gly10Val	p.G10V	ENST00000256078	NM_033360.2	10	gGa/gTa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32893460	32893460	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	G			P-0009633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	78	258	0	ENST00000380152.3:c.314T>G	p.Leu105Ter	p.L105*	ENST00000380152		105	tTa/tGa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533113	63533113	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	141	395	0	ENST00000307078.5:c.1781C>G	p.Ala594Gly	p.A594G	ENST00000307078	NM_004655.3	594	gCc/gGc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922995	44922995	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1105	194	599	0	ENST00000377967.4:c.1856A>G	p.His619Arg	p.H619R	ENST00000377967	NM_021140.2	619	cAt/cGt																																																																															
ARAF	369	MSKCC	GRCh37	X	47426106	47426106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	222	590	1	ENST00000377045.4:c.626G>A	p.Arg209His	p.R209H	ENST00000377045	NM_001654.4	209	cGc/cAc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	376	417	2	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108225591	108225591	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	158	457	0	ENST00000278616.4:c.8840C>A	p.Thr2947Asn	p.T2947N	ENST00000278616	NM_000051.3	2947	aCc/aAc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28599003	28599003	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	112	399	0	ENST00000241453.7:c.2285C>G	p.Ser762Cys	p.S762C	ENST00000241453	NM_004119.2	762	tCt/tGt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276196	15276196	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	215	470	0	ENST00000263388.2:c.5798A>G	p.Asn1933Ser	p.N1933S	ENST00000263388	NM_000435.2	1933	aAt/aGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023467	27023486	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGGAGCCCTACGCGGGGC	CCTGGAGCCCTACGCGGGGC	-			P-0009636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	722	406	0	ENST00000324856.7:c.575_594del	p.Leu192ProfsTer201	p.L192Pfs*201	ENST00000324856	NM_006015.4	191	ggCCTGGAGCCCTACGCGGGGCcc/ggcc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111495	8111496	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGAGGA			P-0009636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	367	411	0	ENST00000346208.3:c.982_988dup	p.Arg330MetfsTer24	p.R330Mfs*24	ENST00000346208		327	-/TGGAGGA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	61	190	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120612013	120612014	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0009656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	12	53	0	ENST00000256646.2:c.7_8delinsTT	p.Ala3Phe	p.A3F	ENST00000256646	NM_024408.3	3	GCc/TTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	293	610	0	ENST00000269305.4:c.568C>A	p.Pro190Thr	p.P190T	ENST00000269305	NM_001126112.2	190	Cct/Act																																																																															
TET1	80312	MSKCC	GRCh37	10	70426850	70426850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	171	650	1	ENST00000373644.4:c.4510C>T	p.Gln1504Ter	p.Q1504*	ENST00000373644	NM_030625.2	1504	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579374	7579382	+	inframe_deletion	In_Frame_Del	DEL	CCTGGTAGG	CCTGGTAGG	-			P-0009686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	145	647	0	ENST00000269305.4:c.305_313del	p.Thr102_Gly105delinsSer	p.T102_G105delinsS	ENST00000269305	NM_001126112.2	102	aCCTACCAGGgc/agc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0009692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	330	399	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	184	426	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664465	138664465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	136	231	0	ENST00000330315.3:c.1100C>T	p.Thr367Ile	p.T367I	ENST00000330315	NM_023067.3	367	aCc/aTc																																																																															
KDR	3791	MSKCC	GRCh37	4	55987337	55987337	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	112	337	0	ENST00000263923.4:c.88G>C	p.Asp30His	p.D30H	ENST00000263923	NM_002253.2	30	Gat/Cat																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93955087	93955087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	169	737	0	ENST00000369303.4:c.2811G>A	p.Met937Ile	p.M937I	ENST00000369303	NM_004440.3	937	atG/atA																																																																															
CD276	80381	MSKCC	GRCh37	15	74003497	74003497	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	322	636	0	ENST00000318443.5:c.1568C>G	p.Ser523Cys	p.S523C	ENST00000318443	NM_001024736.1	523	tCt/tGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68849515	68849515	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	290	593	0	ENST00000261769.5:c.1418T>A	p.Val473Asp	p.V473D	ENST00000261769	NM_004360.3	473	gTc/gAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5219316	5219322	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTACTT	CTTACTT	-			P-0009692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	183	442	0	ENST00000357368.4:c.3922_3923+5del		p.X1308_splice	ENST00000357368	NM_002850.3	1308																																																																																
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0009704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	493	557	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242486	+	inframe_deletion	In_Frame_Del	DEL	TTAAGAGAAGCAACATCT	TTAAGAGAAGCAACATCT	-	rs121913440		P-0009704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1117	275	463	0	ENST00000275493.2:c.2239_2256del	p.Leu747_Ser752del	p.L747_S752del	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAACATCT/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0009707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	65	218	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959109	2959109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	102	365	1	ENST00000396946.4:c.2407G>A	p.Val803Ile	p.V803I	ENST00000396946	NM_032415.4	803	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112175707	112175707	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	74	392	0	ENST00000257430.4:c.4418del	p.Asn1473MetfsTer34	p.N1473Mfs*34	ENST00000257430	NM_000038.5	1472	gtA/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	350	537	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220469	1220469	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1219	413	726	0	ENST00000326873.7:c.563del	p.Gly188AlafsTer99	p.G188Afs*99	ENST00000326873	NM_000455.4	188	Ggc/gc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911502	134911502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1094	171	499	0	ENST00000398015.3:c.1967G>T	p.Gly656Val	p.G656V	ENST00000398015	NM_004441.4	656	gGg/gTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11300456	11300456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1301	343	546	0	ENST00000361445.4:c.1690C>A	p.Gln564Lys	p.Q564K	ENST00000361445	NM_004958.3	564	Cag/Aag																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156848960	156848960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1372	322	634	1	ENST00000524377.1:c.1852G>T	p.Ala618Ser	p.A618S	ENST00000524377	NM_002529.3	618	Gct/Tct																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010478	48010478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	109	263	3	ENST00000234420.5:c.106G>T	p.Ala36Ser	p.A36S	ENST00000234420	NM_000179.2	36	Gct/Tct																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157505555	157505555	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	101	337	0	ENST00000346085.5:c.3536A>C	p.Gln1179Pro	p.Q1179P	ENST00000346085	NM_020732.3	1179	cAg/cCg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485865	8485865	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1502	208	744	1	ENST00000356435.5:c.2952A>T	p.Leu984Phe	p.L984F	ENST00000356435		984	ttA/ttT																																																																															
WT1	7490	MSKCC	GRCh37	11	32456447	32456447	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	189	340	1	ENST00000332351.3:c.445G>T	p.Ala149Ser	p.A149S	ENST00000332351	NM_024426.4	149	Gcg/Tcg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112136	115112136	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1368	162	639	2	ENST00000257566.3:c.1604C>A	p.Ala535Glu	p.A535E	ENST00000257566	NM_016569.3	535	gCg/gAg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118796	115118796	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1457	418	718	0	ENST00000257566.3:c.545A>G	p.Lys182Arg	p.K182R	ENST00000257566	NM_016569.3	182	aAg/aGg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67358697	67358697	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	142	490	0	ENST00000327367.4:c.205A>T	p.Arg69Trp	p.R69W	ENST00000327367	NM_005902.3	69	Agg/Tgg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423505	88423505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1342	436	814	1	ENST00000360948.2:c.2330C>A	p.Thr777Lys	p.T777K	ENST00000360948	NM_001012338.2	777	aCg/aAg																																																																															
NF1	4763	MSKCC	GRCh37	17	29533256	29533256	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	447	619	0	ENST00000358273.4:c.1261-2A>T		p.X421_splice	ENST00000358273	NM_001042492.2	421																																																																																
STAT5A	6776	MSKCC	GRCh37	17	40453425	40453425	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2823	352	1244	0	ENST00000345506.4:c.1122C>G	p.Ile374Met	p.I374M	ENST00000345506	NM_003152.3	374	atC/atG																																																																															
AXL	558	MSKCC	GRCh37	19	41737110	41737110	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1932	280	884	0	ENST00000301178.4:c.690C>A	p.Asn230Lys	p.N230K	ENST00000301178	NM_021913.4	230	aaC/aaA																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222511	53222511	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	109	231	1	ENST00000375401.3:c.4321G>T	p.Glu1441Ter	p.E1441*	ENST00000375401	NM_004187.3	1441	Gag/Tag																																																																															
IL10	3586	MSKCC	GRCh37	1	206944289	206944290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1384	363	727	0	ENST00000423557.1:c.340dup	p.Glu114GlyfsTer20	p.E114Gfs*20	ENST00000423557	NM_000572.2	114	gag/gGag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86627317	86627317	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	216	494	0	ENST00000274376.6:c.692+1del		p.R231fs	ENST00000274376	NM_002890.2	231	aGg/ag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41256963	41256963	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1164	297	557	0	ENST00000357654.3:c.223del	p.Glu75LysfsTer13	p.E75Kfs*13	ENST00000357654	NM_007294.3	75	Gaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578254	7578254	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	197	474	1	ENST00000269305.4:c.595G>T	p.Gly199Ter	p.G199*	ENST00000269305	NM_001126112.2	199	Gga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	478	273	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	471	508	0	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225687	26225687	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2063	844	1130	0	ENST00000360408.1:c.305T>G	p.Val102Gly	p.V102G	ENST00000360408	NM_003532.2	102	gTg/gGg																																																																															
MGA	23269	MSKCC	GRCh37	15	42003492	42003492	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	1162	946	0	ENST00000219905.7:c.3029C>G	p.Thr1010Arg	p.T1010R	ENST00000219905	NM_001164273.1	1010	aCa/aGa																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52719115	52719115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	284	422	0	ENST00000322088.6:c.891G>T	p.Glu297Asp	p.E297D	ENST00000322088	NM_014225.5	297	gaG/gaT																																																																															
BLM	641	MSKCC	GRCh37	15	91341426	91341430	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAC	AAAAC	-			P-0009740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	51	526	0	ENST00000355112.3:c.3219_3223del	p.Thr1074ArgfsTer4	p.T1074Rfs*4	ENST00000355112	NM_000057.2	1073	AAAACa/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0009757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	230	350	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
SOX17	64321	MSKCC	GRCh37	8	55372071	55372071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	51	270	0	ENST00000297316.4:c.761C>T	p.Ala254Val	p.A254V	ENST00000297316	NM_022454.3	254	gCg/gTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971080	21971080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	105	167	1	ENST00000304494.5:c.278C>T	p.Thr93Met	p.T93M	ENST00000304494	NM_000077.4	93	aCg/aTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436055	56436055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	189	461	0	ENST00000407977.2:c.1082del	p.Pro361LeufsTer58	p.P361Lfs*58	ENST00000407977		361	cCt/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	203	355	0	ENST00000269305.4:c.405C>A	p.Cys135Ter	p.C135*	ENST00000269305	NM_001126112.2	135	tgC/tgA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061209	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	128	222	0	ENST00000250448.2:c.780dup	p.Arg261AlafsTer32	p.R261Afs*32	ENST00000250448	NM_004496.3	260	-/G																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	625	565	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	432	433	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900884	3900884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1650	223	697	0	ENST00000262367.5:c.212C>T	p.Ser71Leu	p.S71L	ENST00000262367	NM_004380.2	71	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0009821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	472	500	0	ENST00000269305.4:c.920-1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120459212	120459212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	198	412	0	ENST00000256646.2:c.6133C>T	p.Leu2045Phe	p.L2045F	ENST00000256646	NM_024408.3	2045	Ctt/Ttt																																																																															
TCEB1	6921	MSKCC	GRCh37	8	74868226	74868226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	114	240	0	ENST00000284811.8:c.68C>T	p.Ser23Leu	p.S23L	ENST00000284811		23	tCa/tTa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411990	63411990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1841	207	1119	0	ENST00000330258.3:c.1177G>A	p.Glu393Lys	p.E393K	ENST00000330258	NM_152424.3	393	Gaa/Aaa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754353	57754354	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GACTAAG			P-0009821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	155	450	0	ENST00000274289.3:c.496-5_497dup	p.Met167LeufsTer34	p.M167Lfs*34	ENST00000274289	NM_006622.3	166	tca/tcCTTAGTCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0009828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			43	39	495	1	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115750	8115750	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	100	643	2	ENST00000346208.3:c.1096C>T	p.Arg366Ter	p.R366*	ENST00000346208		366	Cga/Tga																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72842152	72842152	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	23	438	0	ENST00000325599.8:c.1096C>G	p.His366Asp	p.H366D	ENST00000325599	NM_018130.2	366	Cac/Gac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356101	66356101	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			41	16	360	0	ENST00000273854.3:c.1396C>T	p.Gln466Ter	p.Q466*	ENST00000273854	NM_004439.5	466	Caa/Taa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245969	5245969	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			34	15	394	0	ENST00000357368.4:c.806T>A	p.Val269Glu	p.V269E	ENST00000357368	NM_002850.3	269	gTg/gAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0009871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	111	602	1	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370796	55370796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	103	262	3	ENST00000297316.4:c.98C>T	p.Ala33Val	p.A33V	ENST00000297316	NM_022454.3	33	gCc/gTc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964098	28964098	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	57	692	0	ENST00000282397.4:c.1804T>G	p.Tyr602Asp	p.Y602D	ENST00000282397	NM_002019.4	602	Tac/Gac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807986	3807986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	116	488	0	ENST00000262367.5:c.3433G>T	p.Gly1145Trp	p.G1145W	ENST00000262367	NM_004380.2	1145	Ggg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112173889	112173890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAG			P-0009871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	61	509	1	ENST00000257430.4:c.2600_2603dup	p.Glu868AspfsTer45	p.E868Dfs*45	ENST00000257430	NM_000038.5	866	-/ACAG																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910801	114910802	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1722	113	1055	0	ENST00000543371.1:c.920_921insA	p.Ile309HisfsTer19	p.I309Hfs*19	ENST00000543371	NM_001198531.1	307	acg/acAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	31	204	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1284	119	462	1	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	29	156	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65335121	65335121	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	81	363	1	ENST00000342505.4:c.520C>T	p.Arg174Ter	p.R174*	ENST00000342505	NM_002227.2	174	Cga/Tga																																																																															
MLL2	8085	MSKCC	GRCh37	12	49416600	49416600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	80	348	0	ENST00000301067.7:c.16111G>A	p.Glu5371Lys	p.E5371K	ENST00000301067	NM_003482.3	5371	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099397	27099397	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	80	383	0	ENST00000324856.7:c.3634C>T	p.Gln1212Ter	p.Q1212*	ENST00000324856	NM_006015.4	1212	Cag/Tag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11184631	11184631	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1178	106	423	0	ENST00000361445.4:c.6586G>T	p.Glu2196Ter	p.E2196*	ENST00000361445	NM_004958.3	2196	Gag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199603	16199603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	56	272	0	ENST00000375759.3:c.376G>A	p.Glu126Lys	p.E126K	ENST00000375759	NM_015001.2	126	Gaa/Aaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16242628	16242628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	58	378	1	ENST00000375759.3:c.1249G>A	p.Glu417Lys	p.E417K	ENST00000375759	NM_015001.2	417	Gaa/Aaa																																																																															
ALK	238	MSKCC	GRCh37	2	29416726	29416726	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	52	244	0	ENST00000389048.3:c.4227G>C	p.Glu1409Asp	p.E1409D	ENST00000389048	NM_004304.4	1409	gaG/gaC																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155681	56155681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	60	296	0	ENST00000399503.3:c.773C>T	p.Ser258Leu	p.S258L	ENST00000399503	NM_005921.1	258	tCa/tTa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637673	176637673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	76	323	0	ENST00000439151.2:c.2273C>T	p.Ser758Leu	p.S758L	ENST00000439151	NM_022455.4	758	tCa/tTa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176639026	176639026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	66	282	0	ENST00000439151.2:c.3626C>T	p.Pro1209Leu	p.P1209L	ENST00000439151	NM_022455.4	1209	cCt/cTt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106547220	106547220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	48	210	0	ENST00000369096.4:c.457G>A	p.Glu153Lys	p.E153K	ENST00000369096	NM_001198.3	153	Gaa/Aaa																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771909	135771909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	49	277	0	ENST00000298552.3:c.3208G>A	p.Ala1070Thr	p.A1070T	ENST00000298552	NM_001162426.1	1070	Gcg/Acg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858925	57858925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1681	141	702	0	ENST00000228682.2:c.421C>T	p.His141Tyr	p.H141Y	ENST00000228682	NM_005269.2	141	Cac/Tac																																																																															
MGA	23269	MSKCC	GRCh37	15	42028539	42028539	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1763	138	667	0	ENST00000219905.7:c.4077C>G	p.Ile1359Met	p.I1359M	ENST00000219905	NM_001164273.1	1359	atC/atG																																																																															
TSC2	7249	MSKCC	GRCh37	16	2104389	2104389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1127	80	416	0	ENST00000219476.3:c.429C>G	p.Phe143Leu	p.F143L	ENST00000219476	NM_000548.3	143	ttC/ttG																																																																															
CDH1	999	MSKCC	GRCh37	16	68835733	68835733	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1255	88	481	0	ENST00000261769.5:c.324A>C	p.Arg108Ser	p.R108S	ENST00000261769	NM_004360.3	108	agA/agC																																																																															
CIC	23152	MSKCC	GRCh37	19	42796353	42796353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	85	383	0	ENST00000575354.2:c.3002C>T	p.Ser1001Phe	p.S1001F	ENST00000575354	NM_015125.3	1001	tCc/tTc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46271054	46271054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1601	134	571	0	ENST00000371998.3:c.3178C>T	p.Leu1060Phe	p.L1060F	ENST00000371998		1060	Ctt/Ttt																																																																															
CDH1	999	MSKCC	GRCh37	16	68835740	68835752	+	frameshift_variant	Frame_Shift_Del	DEL	TCCACCAAAGTCA	TCCACCAAAGTCA	-			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1241	82	484	0	ENST00000261769.5:c.331_343del	p.Ser111ArgfsTer2	p.S111Rfs*2	ENST00000261769	NM_004360.3	111	TCCACCAAAGTCAcg/cg																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0009902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	40	504	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295773	212295773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1299031105		P-0009902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	70	492	0	ENST00000342788.4:c.2540G>A	p.Arg847His	p.R847H	ENST00000342788	NM_005235.2	847	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0009902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	76	363	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100451	8100451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	153	585	0	ENST00000346208.3:c.425C>T	p.Ser142Leu	p.S142L	ENST00000346208		142	tCg/tTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5238951	5238951	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1237159914		P-0009902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	45	330	1	ENST00000357368.4:c.1828C>T	p.Arg610Trp	p.R610W	ENST00000357368	NM_002850.3	610	Cgg/Tgg																																																																															
ERG	2078	MSKCC	GRCh37	21	39764312	39764312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	35	304	1	ENST00000288319.7:c.800C>T	p.Thr267Met	p.T267M	ENST00000288319	NM_182918.3	267	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175527	112175527	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	33	314	0	ENST00000257430.4:c.4237delA	p.Met1413TrpfsTer2	p.M1413Wfs*2	ENST00000257430	NM_000038.5	1412	ggA/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	120	371	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0009909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	133	481	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
IGF1	3479	MSKCC	GRCh37	12	102869552	102869552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	36	188	0	ENST00000307046.8:c.89C>T	p.Ser30Leu	p.S30L	ENST00000307046	NM_001111285.1	30	tCg/tTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976727	2976727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	109	449	2	ENST00000396946.4:c.1285G>A	p.Val429Ile	p.V429I	ENST00000396946	NM_032415.4	429	Gtc/Atc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0009945-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	95	354	2	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009945-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	143	526	0	ENST00000269305.4:c.808T>G	p.Phe270Val	p.F270V	ENST00000269305	NM_001126112.2	270	Ttt/Gtt																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573813	64573813	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139936447		P-0009945-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	43	250	1	ENST00000337652.1:c.955C>T	p.Arg319Trp	p.R319W	ENST00000337652	NM_130803.2	319	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	129	291	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0009948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	145	378	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
CCND3	896	MSKCC	GRCh37	6	41909347	41909347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	55	115	0	ENST00000372991.4:c.41G>T	p.Arg14Leu	p.R14L	ENST00000372991	NM_001760.3	14	cGg/cTg																																																																															
MLL	4297	MSKCC	GRCh37	11	118374701	118374701	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	195	462	0	ENST00000534358.1:c.8094A>T	p.Glu2698Asp	p.E2698D	ENST00000534358	NM_005933.3	2698	gaA/gaT																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81922859	81922859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1395	305	696	0	ENST00000359376.3:c.848C>A	p.Pro283His	p.P283H	ENST00000359376	NM_002661.3	283	cCt/cAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686344	30686344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	103	284	0	ENST00000359013.4:c.275G>A	p.Cys92Tyr	p.C92Y	ENST00000359013	NM_001024847.2	92	tGc/tAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600407	10600407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1861	187	494	0	ENST00000171111.5:c.1448G>A	p.Arg483His	p.R483H	ENST00000171111	NM_203500.1	483	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0009955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1409	171	385	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	293	386	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969968	161969968	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746215864		P-0009988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	318	473	2	ENST00000366898.1:c.1001G>A	p.Arg334His	p.R334H	ENST00000366898	NM_004562.2	334	cGc/cAc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138376569	138376569	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	373	540	1	ENST00000289153.2:c.2905C>A	p.Gln969Lys	p.Q969K	ENST00000289153	NM_006219.2	969	Caa/Aaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061219	38061219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	218	319	1	ENST00000250448.2:c.770G>A	p.Gly257Asp	p.G257D	ENST00000250448	NM_004496.3	257	gGc/gAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023308	27023308	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	37	87	0	ENST00000324856.7:c.414del	p.Ala139ProfsTer93	p.A139Pfs*93	ENST00000324856	NM_006015.4	138	tcA/tc																																																																															
CDH1	999	MSKCC	GRCh37	16	68772216	68772222	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAGGA	GCCAGGA	-			P-0009988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	292	561	2	ENST00000261769.5:c.68_74del	p.Gln23ArgfsTer31	p.Q23Rfs*31	ENST00000261769	NM_004360.3	22	tGCCAGGAg/tg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0010002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	103	422	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	85	241	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045979	47045979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	143	432	0	ENST00000329236.7:c.2540G>A	p.Arg847His	p.R847H	ENST00000329236	NM_001204466.1	847	cGc/cAc																																																																															
CBFB	865	MSKCC	GRCh37	16	67070640	67070643	+	frameshift_variant	Frame_Shift_Del	DEL	AGAA	AGAA	-			P-0010002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	123	416	0	ENST00000412916.2:c.267_270delAAGA	p.Arg90LysfsTer7	p.R90Kfs*7	ENST00000412916		88	ttAGAA/tt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244816	41244816	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	1056	710	0	ENST00000357654.3:c.2732del	p.Gly911GlufsTer89	p.G911Efs*89	ENST00000357654	NM_007294.3	911	gGa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579359	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0010035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	502	527	0	ENST00000269305.4:c.327_328dup	p.Arg110ProfsTer14	p.R110Pfs*14	ENST00000269305	NM_001126112.2	110	cgt/cCCgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0010065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	12	524	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193110982	193110982	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0010065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	22	250	0	ENST00000367435.3:c.515C>T	p.Ser172Phe	p.S172F	ENST00000367435	NM_024529.4	172	tCt/tTt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519961		P-0010086-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			604	269	532	3	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105782	27105782	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010086-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			339	478	652	0	ENST00000324856.7:c.5393C>G	p.Ser1798Ter	p.S1798*	ENST00000324856	NM_006015.4	1798	tCa/tGa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55211157	55211157	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010086-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			423	286	554	0	ENST00000275493.2:c.400G>T	p.Glu134Ter	p.E134*	ENST00000275493	NM_005228.3	134	Gag/Tag																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621926	1621926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010086-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			764	199	939	0	ENST00000344749.5:c.866C>T	p.Ser289Phe	p.S289F	ENST00000344749	NM_001136139.2	289	tCt/tTt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256530	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0010086-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			437	531	753	0	ENST00000369535.4:c.181_182delinsAG	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	CAa/AGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0010098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	157	341	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	111	477	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	402	478	1	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0010098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	120	401	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0010098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	229	444	3	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
MTOR	2475	MSKCC	GRCh37	1	11298032	11298032	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	200	540	0	ENST00000361445.4:c.2076C>G	p.Asn692Lys	p.N692K	ENST00000361445	NM_004958.3	692	aaC/aaG																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401091	139401091	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0010098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	58	498	0	ENST00000277541.6:c.3902G>T	p.Gly1301Val	p.G1301V	ENST00000277541	NM_017617.3	1301	gGg/gTg																																																																															
RET	5979	MSKCC	GRCh37	10	43597829	43597829	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	505	831	0	ENST00000355710.3:c.377T>G	p.Phe126Cys	p.F126C	ENST00000355710	NM_020975.4	126	tTc/tGc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134346	41134346	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1823	281	1037	3	ENST00000379561.5:c.1282C>T	p.Gln428Ter	p.Q428*	ENST00000379561	NM_002015.3	428	Caa/Taa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227017	53227017	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	235	394	0	ENST00000375401.3:c.2558T>C	p.Leu853Pro	p.L853P	ENST00000375401	NM_004187.3	853	cTc/cCc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123224453	123224453	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	233	443	3	ENST00000218089.9:c.3306G>T	p.Met1102Ile	p.M1102I	ENST00000218089	NM_001042749.1	1102	atG/atT																																																																															
POLE	5426	MSKCC	GRCh37	12	133226456	133226523	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGGCCTCGGCCATCGTGACCTGGAAAGACCCAGTGAAGCCTTAAATCTCAGGATCTCGGGCTGCGCA	GAGGCCTCGGCCATCGTGACCTGGAAAGACCCAGTGAAGCCTTAAATCTCAGGATCTCGGGCTGCGCA	-			P-0010098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	34	512	0	ENST00000320574.5:c.3583-48_3602del		p.X1195_splice	ENST00000320574	NM_006231.2	1195																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	114	599	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0010146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1274	166	872	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	115	388	1	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	95	524	3	ENST00000342988.3:c.1255G>T	p.Gly419Trp	p.G419W	ENST00000342988	NM_005359.5	419	Ggg/Tgg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55154999	55154999	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1283	186	795	0	ENST00000257290.5:c.2708C>G	p.Ser903Cys	p.S903C	ENST00000257290	NM_006206.4	903	tCt/tGt																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99802246	99802246	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	17	97	0	ENST00000280892.6:c.647G>C	p.Gly216Ala	p.G216A	ENST00000280892	NM_001130678.1	216	gGt/gCt																																																																															
MED12	9968	MSKCC	GRCh37	X	70340928	70340928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1593	122	900	1	ENST00000374080.3:c.661C>T	p.Pro221Ser	p.P221S	ENST00000374080		221	Ccc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	35	386	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577560	7577560	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057520002		P-0010195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	74	417	0	ENST00000269305.4:c.721T>C	p.Ser241Pro	p.S241P	ENST00000269305	NM_001126112.2	241	Tcc/Ccc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437573	56437574	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	56	403	0	ENST00000407977.2:c.888dup	p.Asn297Ter	p.N297*	ENST00000407977		296	-/T																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0010207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	292	514	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0010207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	183	372	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149495336	149495336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	54	223	0	ENST00000261799.4:c.3311G>A	p.Ser1104Asn	p.S1104N	ENST00000261799	NM_002609.3	1104	aGc/aAc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412164	63412164	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	449	520	1	ENST00000330258.3:c.1003C>T	p.Gln335Ter	p.Q335*	ENST00000330258	NM_152424.3	335	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	101	319	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0010223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			30	96	492	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210482	5210482	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs147647579		P-0010223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	36	426	0	ENST00000357368.4:c.5485C>T	p.Arg1829Trp	p.R1829W	ENST00000357368	NM_002850.3	1829	Cgg/Tgg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71050185	71050185	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	32	313	0	ENST00000318789.4:c.1000G>C	p.Asp334His	p.D334H	ENST00000318789	NM_032682.5	334	Gac/Cac																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112892380	112892380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			28	86	625	0	ENST00000351677.2:c.538G>A	p.Asp180Asn	p.D180N	ENST00000351677	NM_002834.3	180	Gac/Aac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089689	27089690	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GATGT			P-0010227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	25	296	0	ENST00000324856.7:c.2647_2651dup	p.Cys884Ter	p.C884*	ENST00000324856	NM_006015.4	882	ggg/ggGATGTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936096	+	missense_variant	Missense_Mutation	DNP	AG	AG	CC			P-0010240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	116	257	0	ENST00000263967.3:c.1637_1638delinsCC	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAG/cCC																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838408	156838408	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	165	372	0	ENST00000524377.1:c.686T>C	p.Leu229Pro	p.L229P	ENST00000524377	NM_002529.3	229	cTc/cCc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348080	348080	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	149	392	0	ENST00000262320.3:c.1426C>A	p.Gln476Lys	p.Q476K	ENST00000262320	NM_003502.3	476	Cag/Aag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44920663	44920664	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GG			P-0010240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	38	273	0	ENST00000377967.4:c.1425_1425+1dup		p.Q475fs	ENST00000377967	NM_021140.2	475	cag/caGGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576901	7576901	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	134	420	0	ENST00000269305.4:c.945del	p.Gln317SerfsTer28	p.Q317Sfs*28	ENST00000269305	NM_001126112.2	315	tcT/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0010243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	159	451	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0010243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	196	679	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175548	112175548	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	99	428	0	ENST00000257430.4:c.4260delC	p.Ser1421ValfsTer52	p.S1421Vfs*52	ENST00000257430	NM_000038.5	1419	agC/ag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518262	8518262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	78	394	1	ENST00000356435.5:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000356435		377	Cgc/Tgc																																																																															
EP300	2033	MSKCC	GRCh37	22	41531912	41531912	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0010243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	149	369	0	ENST00000263253.7:c.1622+2T>C		p.X541_splice	ENST00000263253	NM_001429.3	541																																																																																
SETD2	29072	MSKCC	GRCh37	3	47162387	47162387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	52	348	0	ENST00000409792.3:c.3739G>T	p.Asp1247Tyr	p.D1247Y	ENST00000409792	NM_014159.6	1247	Gat/Tat																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982020	93982020	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	81	472	0	ENST00000369303.4:c.1445A>T	p.Glu482Val	p.E482V	ENST00000369303	NM_004440.3	482	gAg/gTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680634	88680634	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0010253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	63	372	0	ENST00000360948.2:c.622+1G>A		p.X208_splice	ENST00000360948	NM_001012338.2	208																																																																																
MET	4233	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0010273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	73	290	0	ENST00000397752.3:c.3028+2T>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	48	387	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	100	408	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	27	188	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TET1	80312	MSKCC	GRCh37	10	70405103	70405103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199844508		P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	41	443	0	ENST00000373644.4:c.2617G>A	p.Val873Ile	p.V873I	ENST00000373644	NM_030625.2	873	Gtt/Att																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	59	162	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	121	412	0	ENST00000269305.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTc/aCc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	55	303	0	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	102	375	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
CASP8	841	MSKCC	GRCh37	2	202149798	202149799	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	56	458	0	ENST00000358485.4:c.1245dup	p.Ile416TyrfsTer8	p.I416Yfs*8	ENST00000358485	NM_001080125.1	413	-/T																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	99	386	1	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	81	600	4	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872461	35872461	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1834	154	803	0	ENST00000216797.5:c.442del	p.Leu148TyrfsTer16	p.L148Yfs*16	ENST00000216797	NM_020529.2	148	Cta/ta																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106562	27106562	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1509	129	671	0	ENST00000324856.7:c.6176del	p.Asn2059ThrfsTer76	p.N2059Tfs*76	ENST00000324856	NM_006015.4	2058	gAa/ga																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44928976	44928976	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	68	631	0	ENST00000377967.4:c.2080del	p.Ala694LeufsTer21	p.A694Lfs*21	ENST00000377967	NM_021140.2	692	caG/ca																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117690401	117690401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	41	347	1	ENST00000369458.3:c.728C>T	p.Ser243Leu	p.S243L	ENST00000369458	NM_024626.3	243	tCg/tTg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206649623	206649623	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	109	325	0	ENST00000367120.3:c.458A>G	p.Tyr153Cys	p.Y153C	ENST00000367120	NM_014002.3	153	tAc/tGc																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226253388	226253388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1803734		P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	36	267	0	ENST00000366813.1:c.160C>T	p.Arg54Cys	p.R54C	ENST00000366813		54	Cgt/Tgt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469975	25469975	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	63	335	0	ENST00000264709.3:c.1067A>G	p.Gln356Arg	p.Q356R	ENST00000264709	NM_175629.2	356	cAg/cGg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520241	176520241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	123	385	0	ENST00000292408.4:c.1160C>T	p.Ala387Val	p.A387V	ENST00000292408	NM_213647.1	387	gCc/gTc																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858507	27858507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1381	159	650	1	ENST00000359303.2:c.64G>A	p.Ala22Thr	p.A22T	ENST00000359303	NM_003535.2	22	Gcc/Acc																																																																															
FYN	2534	MSKCC	GRCh37	6	112015707	112015707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	85	701	0	ENST00000368678.4:c.1135G>A	p.Glu379Lys	p.E379K	ENST00000368678		379	Gag/Aag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662787	117662787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	19	197	0	ENST00000368508.3:c.4678G>A	p.Ala1560Thr	p.A1560T	ENST00000368508	NM_002944.2	1560	Gca/Aca																																																																															
ABL1	25	MSKCC	GRCh37	9	133738373	133738373	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	49	215	0	ENST00000318560.5:c.773A>C	p.Glu258Ala	p.E258A	ENST00000318560	NM_005157.4	258	gAg/gCg																																																																															
RAD52	5893	MSKCC	GRCh37	12	1042175	1042175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	75	425	0	ENST00000358495.3:c.50C>T	p.Ala17Val	p.A17V	ENST00000358495	NM_134424.2	17	gCt/gTt																																																																															
MLL2	8085	MSKCC	GRCh37	12	49446707	49446707	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	44	252	0	ENST00000301067.7:c.1103T>G	p.Val368Gly	p.V368G	ENST00000301067	NM_003482.3	368	gTg/gGg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2131771	2131771	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	95	357	0	ENST00000219476.3:c.3786A>C	p.Lys1262Asn	p.K1262N	ENST00000219476	NM_000548.3	1262	aaA/aaC																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136275	2136275	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	180	494	0	ENST00000219476.3:c.4744A>G	p.Ile1582Val	p.I1582V	ENST00000219476	NM_000548.3	1582	Atc/Gtc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857751	9857751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1396	149	607	0	ENST00000330684.3:c.3650G>A	p.Cys1217Tyr	p.C1217Y	ENST00000330684	NM_001134407.1	1217	tGc/tAc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032525	12032525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	47	344	0	ENST00000353533.5:c.961G>A	p.Val321Met	p.V321M	ENST00000353533	NM_003010.3	321	Gtg/Atg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350322	15350322	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	92	367	1	ENST00000263377.2:c.3457A>G	p.Lys1153Glu	p.K1153E	ENST00000263377	NM_058243.2	1153	Aag/Gag																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792458	33792458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1565	150	717	1	ENST00000498907.2:c.863G>A	p.Arg288Gln	p.R288Q	ENST00000498907	NM_004364.3	288	cGg/cAg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164875	36164875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	55	276	1	ENST00000300305.3:c.1000C>T	p.Arg334Cys	p.R334C	ENST00000300305		334	Cgc/Tgc																																																																															
JUN	3725	MSKCC	GRCh37	1	59248325	59248325	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	29	78	0	ENST00000371222.2:c.418del	p.Ala140GlnfsTer8	p.A140Qfs*8	ENST00000371222	NM_002228.3	140	Gca/ca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539281	187539282	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	30	458	0	ENST00000441802.2:c.8458_8459del	p.Glu2820LysfsTer7	p.E2820Kfs*7	ENST00000441802	NM_005245.3	2820	GAa/a																																																																															
BTK	695	MSKCC	GRCh37	X	100615679	100615679	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	114	689	3	ENST00000308731.7:c.653del	p.Lys218ArgfsTer11	p.K218Rfs*11	ENST00000308731	NM_000061.2	218	aAg/ag																																																																															
SMO	6608	MSKCC	GRCh37	7	128843236	128843237	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	122	389	0	ENST00000249373.3:c.349dup	p.Arg117ProfsTer19	p.R117Pfs*19	ENST00000249373	NM_005631.4	115	gcc/gCcc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932794	39932794	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1570	223	783	0	ENST00000378444.4:c.1805del	p.Pro602ArgfsTer67	p.P602Rfs*67	ENST00000378444	NM_001123385.1	602	cCg/cg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118924	70118926	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1241	156	565	0	ENST00000245479.2:c.499_501del	p.Lys167del	p.K167del	ENST00000245479	NM_000346.3	166	AAG/-																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843538	156843538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	225	434	0	ENST00000524377.1:c.964C>A	p.Leu322Ile	p.L322I	ENST00000524377	NM_002529.3	322	Ctc/Atc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47061268	47061268	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	355	762	0	ENST00000409792.3:c.7413A>C	p.Lys2471Asn	p.K2471N	ENST00000409792	NM_014159.6	2471	aaA/aaC																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504324	186504324	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	83	400	2	ENST00000323963.5:c.661G>T	p.Val221Leu	p.V221L	ENST00000323963		221	Gtg/Ttg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0010334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	59	63	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	261	448	1	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	260	337	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																															
APC	324	MSKCC	GRCh37	5	112174386	112174386	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	104	306	0	ENST00000257430.4:c.3095C>G	p.Ser1032Ter	p.S1032*	ENST00000257430	NM_000038.5	1032	tCa/tGa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435858	56435858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	47	344	0	ENST00000407977.2:c.1279C>T	p.His427Tyr	p.H427Y	ENST00000407977		427	Cac/Tac																																																																															
BBC3	27113	MSKCC	GRCh37	19	47725035	47725035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	261	720	0	ENST00000449228.1:c.709G>A	p.Val237Ile	p.V237I	ENST00000449228	NM_001127240.2	237	Gtc/Atc																																																																															
JUN	3725	MSKCC	GRCh37	1	59248443	59248443	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	217	458	0	ENST00000371222.2:c.300del	p.Lys101ArgfsTer3	p.K101Rfs*3	ENST00000371222	NM_002228.3	100	ccC/cc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221995	1221995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	871	490	0	ENST00000326873.7:c.910C>T	p.Arg304Trp	p.R304W	ENST00000326873	NM_000455.4	304	Cgg/Tgg																																																																															
JUN	3725	MSKCC	GRCh37	1	59248394	59248394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	170	239	0	ENST00000371222.2:c.349G>A	p.Ala117Thr	p.A117T	ENST00000371222	NM_002228.3	117	Gcc/Acc																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969996	161969996	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	233	388	1	ENST00000366898.1:c.973C>A	p.Leu325Met	p.L325M	ENST00000366898	NM_004562.2	325	Ctg/Atg																																																																															
MLL	4297	MSKCC	GRCh37	11	118370600	118370600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	76	353	0	ENST00000534358.1:c.6130G>A	p.Glu2044Lys	p.E2044K	ENST00000534358	NM_005933.3	2044	Gaa/Aaa																																																																															
MLL	4297	MSKCC	GRCh37	11	118373799	118373799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	39	222	0	ENST00000534358.1:c.7192G>A	p.Glu2398Lys	p.E2398K	ENST00000534358	NM_005933.3	2398	Gaa/Aaa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216751	2216751	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	305	143	0	ENST00000398665.3:c.2395G>T	p.Glu799Ter	p.E799*	ENST00000398665	NM_032482.2	799	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602322	10602322	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	895	387	0	ENST00000171111.5:c.1256G>T	p.Gly419Val	p.G419V	ENST00000171111	NM_203500.1	419	gGg/gTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39911573	39911573	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	381	645	0	ENST00000378444.4:c.5057A>G	p.Asn1686Ser	p.N1686S	ENST00000378444	NM_001123385.1	1686	aAc/aGc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123200084	123200084	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	500	882	3	ENST00000218089.9:c.2156G>T	p.Gly719Val	p.G719V	ENST00000218089	NM_001042749.1	719	gGa/gTa																																																																															
DAXX	1616	MSKCC	GRCh37	6	33286533	33286533	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0010445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	143	239	0	ENST00000374542.5:c.2210C>G	p.Ser737Ter	p.S737*	ENST00000374542	NM_001141970.1	737	tCa/tGa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2100405	2100406	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0010445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	289	515	1	ENST00000219476.3:c.143_144del	p.Leu48GlnfsTer18	p.L48Qfs*18	ENST00000219476	NM_000548.3	48	cTG/c																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575101	64575103	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0010445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	186	338	0	ENST00000337652.1:c.719_721del	p.Glu240del	p.E240del	ENST00000337652	NM_130803.2	240	gAGGtg/gtg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539487	187539487	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	378	515	0	ENST00000441802.2:c.8253delT	p.Phe2751LeufsTer2	p.F2751Lfs*2	ENST00000441802	NM_005245.3	2751	ttT/tt																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871020	12871033	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTTGCCCGAGTT	AGCTTGCCCGAGTT	-			P-0010565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	276	358	0	ENST00000228872.4:c.247_260delAGCTTGCCCGAGTT	p.Ser83LeufsTer37	p.S83Lfs*37	ENST00000228872	NM_004064.3	83	AGCTTGCCCGAGTTc/c																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060665	38060665	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	104	715	1	ENST00000250448.2:c.1324G>T	p.Ala442Ser	p.A442S	ENST00000250448	NM_004496.3	442	Gcc/Tcc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627209	37627209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	68	435	0	ENST00000447079.4:c.1125del	p.Ser376ValfsTer60	p.S376Vfs*60	ENST00000447079	NM_015083.1	375	tCc/tc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618657	37618657	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	105	476	0	ENST00000447079.4:c.333del	p.Arg112ValfsTer12	p.R112Vfs*12	ENST00000447079	NM_015083.1	111	caT/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0010600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	547	485	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178469	56178469	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	224	392	2	ENST00000399503.3:c.3442A>G	p.Thr1148Ala	p.T1148A	ENST00000399503	NM_005921.1	1148	Act/Gct																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222160	2222160	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1471	117	626	0	ENST00000398665.3:c.2992C>G	p.Leu998Val	p.L998V	ENST00000398665	NM_032482.2	998	Ctt/Gtt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045710	47045710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	430	587	1	ENST00000329236.7:c.2357G>T	p.Arg786Leu	p.R786L	ENST00000329236	NM_001204466.1	786	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	631	526	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0010627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	614	576	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715721	30715721	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893816		P-0010627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	278	439	0	ENST00000359013.4:c.1454G>A	p.Arg485His	p.R485H	ENST00000359013	NM_001024847.2	485	cGc/cAc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288969	212288969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148791072		P-0010627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	344	623	0	ENST00000342788.4:c.2777C>T	p.Thr926Met	p.T926M	ENST00000342788	NM_005235.2	926	aCg/aTg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066725	94066725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1357	560	936	1	ENST00000369303.4:c.1034C>T	p.Thr345Ile	p.T345I	ENST00000369303	NM_004440.3	345	aCc/aTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971110	21971110	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	169	206	0	ENST00000304494.5:c.248A>G	p.His83Arg	p.H83R	ENST00000304494	NM_000077.4	83	cAc/cGc																																																																															
NF1	4763	MSKCC	GRCh37	17	29527462	29527462	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs76015786		P-0010627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	211	413	0	ENST00000358273.4:c.911G>A	p.Arg304Gln	p.R304Q	ENST00000358273	NM_001042492.2	304	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112175259	112175260	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0010627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	347	445	0	ENST00000257430.4:c.3968_3969delTT	p.Val1323AlafsTer8	p.V1323Afs*8	ENST00000257430	NM_000038.5	1323	gTT/g																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925334	114925334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010628-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			631	87	672	0	ENST00000543371.1:c.1412G>T	p.Arg471Leu	p.R471L	ENST00000543371	NM_001198531.1	471	cGc/cTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342656	118342656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010628-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			281	90	310	0	ENST00000534358.1:c.782C>G	p.Ser261Cys	p.S261C	ENST00000534358	NM_005933.3	261	tCt/tGt																																																																															
RAD51	5888	MSKCC	GRCh37	15	41011027	41011027	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010628-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			569	70	788	0	ENST00000267868.3:c.460G>C	p.Glu154Gln	p.E154Q	ENST00000267868	NM_002875.4	154	Gaa/Caa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821094	72821094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010628-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			695	113	720	0	ENST00000268489.5:c.11081C>G	p.Thr3694Ser	p.T3694S	ENST00000268489	NM_006885.3	3694	aCc/aGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579669	7579729	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCAGGTCCCCAGCCCAACCCTTGTCCTTACCAGAACGTTGTTTTCAGGAAGTCTGAAAGA	TCCAGGTCCCCAGCCCAACCCTTGTCCTTACCAGAACGTTGTTTTCAGGAAGTCTGAAAGA	AAC			P-0010628-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			407	204	775	3	ENST00000269305.4:c.75-8_96+31delinsGTT		p.X25_splice	ENST00000269305	NM_001126112.2	25																																																																																
RAD51C	5889	MSKCC	GRCh37	17	56770065	56770065	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010628-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			685	42	573	0	ENST00000337432.4:c.61C>G	p.Pro21Ala	p.P21A	ENST00000337432	NM_058216.2	21	Cca/Gca																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78858903	78858903	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010628-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			618	229	731	1	ENST00000306801.3:c.1938G>T	p.Met646Ile	p.M646I	ENST00000306801	NM_020761.2	646	atG/atT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228015	36228053	+	inframe_deletion	In_Frame_Del	DEL	CCACCATGATGCTGTCATCTTCCTGGCCGAGCAGCTCCC	CCACCATGATGCTGTCATCTTCCTGGCCGAGCAGCTCCC	-			P-0010628-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			720	38	937	1	ENST00000222270.7:c.7402_7440del	p.His2468_Pro2480del	p.H2468_P2480del	ENST00000222270	NM_014727.1	2467	atCCACCATGATGCTGTCATCTTCCTGGCCGAGCAGCTCCCc/atc																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656778	45656778	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010628-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			563	78	647	0	ENST00000407780.3:c.378G>C	p.Leu126Phe	p.L126F	ENST00000407780	NM_001283052.1	126	ttG/ttC																																																																															
TERT	7015	MSKCC	GRCh37	5	1279423	1279423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010628-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			798	238	948	3	ENST00000310581.5:c.2113G>A	p.Glu705Lys	p.E705K	ENST00000310581	NM_198253.2	705	Gag/Aag																																																																															
MET	4233	MSKCC	GRCh37	7	116380055	116380055	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010628-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			817	169	669	0	ENST00000397752.3:c.1444G>C	p.Asp482His	p.D482H	ENST00000397752	NM_000245.2	482	Gac/Cac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045016	47045016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010628-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	73	1128	0	ENST00000329236.7:c.2108C>T	p.Ser703Leu	p.S703L	ENST00000329236	NM_001204466.1	703	tCa/tTa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0010653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	15	562	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913409		P-0010653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	51	562	0	ENST00000349496.5:c.134C>G	p.Ser45Cys	p.S45C	ENST00000349496	NM_001904.3	45	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0010734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	159	397	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0010734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	181	395	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0010734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	67	255	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593466	48593466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	228	355	0	ENST00000342988.3:c.1217C>T	p.Ala406Val	p.A406V	ENST00000342988	NM_005359.5	406	gCg/gTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15296139	15296139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	230	449	2	ENST00000263388.2:c.2225C>T	p.Pro742Leu	p.P742L	ENST00000263388	NM_000435.2	742	cCg/cTg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426420	47426420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	223	290	0	ENST00000377045.4:c.763C>T	p.Arg255Trp	p.R255W	ENST00000377045	NM_001654.4	255	Cgg/Tgg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412892	63412892	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	363	285	0	ENST00000330258.3:c.275del	p.Lys92ArgfsTer8	p.K92Rfs*8	ENST00000330258	NM_152424.3	92	aAg/ag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	295	514	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0010790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	305	695	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44945176	44945178	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0010790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	238	483	0	ENST00000377967.4:c.3505_3507del	p.Val1169del	p.V1169del	ENST00000377967	NM_021140.2	1167	tTTGtt/ttt																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121018	29121018	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137853009		P-0010811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	66	620	1	ENST00000328354.6:c.539G>A	p.Arg180His	p.R180H	ENST00000328354	NM_007194.3	180	cGc/cAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057054	180057054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	81	580	2	ENST00000261937.6:c.565C>T	p.Arg189Trp	p.R189W	ENST00000261937	NM_182925.4	189	Cgg/Tgg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679810	88679810	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	113	540	0	ENST00000360948.2:c.653del	p.Asn218ThrfsTer2	p.N218Tfs*2	ENST00000360948	NM_001012338.2	218	aAc/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	213	470	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MED12	9968	MSKCC	GRCh37	X	70342150	70342150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	57	428	1	ENST00000374080.3:c.1202C>T	p.Pro401Leu	p.P401L	ENST00000374080		401	cCg/cTg																																																																															
ATM	472	MSKCC	GRCh37	11	108115514	108115514	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0010821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	24	380	0	ENST00000278616.4:c.663-1G>A		p.X221_splice	ENST00000278616	NM_000051.3	221																																																																																
IRS2	8660	MSKCC	GRCh37	13	110434967	110434967	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	34	637	0	ENST00000375856.3:c.3434G>T	p.Arg1145Leu	p.R1145L	ENST00000375856	NM_003749.2	1145	cGc/cTc																																																																															
AR	367	MSKCC	GRCh37	X	66766603	66766603	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0010821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	19	350	0	ENST00000374690.3:c.1615C>A	p.Arg539Ser	p.R539S	ENST00000374690	NM_000044.3	539	Cgt/Agt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0010861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	165	553	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638912	176638912	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs111638717		P-0010861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	184	615	1	ENST00000439151.2:c.3512G>A	p.Arg1171His	p.R1171H	ENST00000439151	NM_022455.4	1171	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	178	550	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MGA	23269	MSKCC	GRCh37	15	42054529	42054529	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1191	196	769	0	ENST00000219905.7:c.7713G>T	p.Leu2571Phe	p.L2571F	ENST00000219905	NM_001164273.1	2571	ttG/ttT																																																																															
TSC2	7249	MSKCC	GRCh37	16	2124306	2124306	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0010861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	217	664	0	ENST00000219476.3:c.2461A>T	p.Lys821Ter	p.K821*	ENST00000219476	NM_000548.3	821	Aag/Tag																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654642	67654642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1163	44	669	2	ENST00000264010.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000264010	NM_006565.3	377	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0010861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	209	642	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
MGA	23269	MSKCC	GRCh37	15	42042574	42042574	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	426	816	0	ENST00000219905.7:c.6770del	p.Pro2257LeufsTer78	p.P2257Lfs*78	ENST00000219905	NM_001164273.1	2257	Cct/ct																																																																															
PRDM1	639	MSKCC	GRCh37	6	106534448	106534448	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	44	550	0	ENST00000369096.4:c.24del	p.Lys8AsnfsTer17	p.K8Nfs*17	ENST00000369096	NM_001198.3	7	gAa/ga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	55	791	3	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
MLL2	8085	MSKCC	GRCh37	12	49434074	49434074	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	35	322	0	ENST00000301067.7:c.7479del	p.Phe2494SerfsTer49	p.F2494Sfs*49	ENST00000301067	NM_003482.3	2493	ggG/gg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	79	341	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	126	551	3	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	128	340	1	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	19	100	3	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	138	591	0	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	111	278	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	99	406	1	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																															
CASP8	841	MSKCC	GRCh37	2	202151289	202151290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	79	513	0	ENST00000358485.4:c.1596dupA	p.Leu533ThrfsTer6	p.L533Tfs*6	ENST00000358485	NM_001080125.1	530	aga/agAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161689	56161689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	83	483	1	ENST00000399503.3:c.1186C>T	p.Arg396Cys	p.R396C	ENST00000399503	NM_005921.1	396	Cgt/Tgt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	67	367	5	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260803	16260803	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150899650		P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	69	427	1	ENST00000375759.3:c.8068G>A	p.Val2690Met	p.V2690M	ENST00000375759	NM_015001.2	2690	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	157	568	1	ENST00000269305.4:c.800G>T	p.Arg267Leu	p.R267L	ENST00000269305	NM_001126112.2	267	cGg/cTg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998607	100998607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	110	609	1	ENST00000325455.5:c.1195C>T	p.Arg399Cys	p.R399C	ENST00000325455	NM_001202474.3	399	Cgc/Tgc																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739410	46739410	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144207599		P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	70	305	0	ENST00000371975.4:c.1601G>A	p.Arg534His	p.R534H	ENST00000371975	NM_003579.3	534	cGt/cAt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65310454	65310454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	102	478	1	ENST00000342505.4:c.2234C>T	p.Thr745Met	p.T745M	ENST00000342505	NM_002227.2	745	aCg/aTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165981	47165981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	80	383	0	ENST00000409792.3:c.145G>A	p.Val49Ile	p.V49I	ENST00000409792	NM_014159.6	49	Gtt/Att																																																																															
TP63	8626	MSKCC	GRCh37	3	189526170	189526170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	99	475	0	ENST00000264731.3:c.434C>T	p.Ala145Val	p.A145V	ENST00000264731	NM_003722.4	145	gCg/gTg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149439369	149439369	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	59	404	1	ENST00000286301.3:c.2026C>T	p.Arg676Ter	p.R676*	ENST00000286301	NM_005211.3	676	Cga/Tga																																																																															
FLT4	2324	MSKCC	GRCh37	5	180052945	180052945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	89	427	1	ENST00000261937.6:c.1345G>A	p.Gly449Arg	p.G449R	ENST00000261937	NM_182925.4	449	Ggg/Agg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956667	93956667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	340	682	1	ENST00000369303.4:c.2569G>A	p.Ala857Thr	p.A857T	ENST00000369303	NM_004440.3	857	Gca/Aca																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521939	157521939	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	155	391	1	ENST00000346085.5:c.4211A>G	p.Tyr1404Cys	p.Y1404C	ENST00000346085	NM_020732.3	1404	tAc/tGc																																																																															
MLL3	58508	MSKCC	GRCh37	7	151864452	151864452	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145072739		P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	49	254	2	ENST00000262189.6:c.9529C>T	p.Arg3177Cys	p.R3177C	ENST00000262189	NM_170606.2	3177	Cgt/Tgt																																																																															
SYK	6850	MSKCC	GRCh37	9	93629423	93629423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	166	454	3	ENST00000375746.1:c.857C>T	p.Ala286Val	p.A286V	ENST00000375746	NM_001174167.1	286	gCg/gTg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231134	98231134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	54	266	1	ENST00000331920.6:c.2149G>A	p.Asp717Asn	p.D717N	ENST00000331920	NM_000264.3	717	Gac/Aac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399309	139399309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	111	451	0	ENST00000277541.6:c.4834G>A	p.Gly1612Ser	p.G1612S	ENST00000277541	NM_017617.3	1612	Ggc/Agc																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139563082	139563082	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	142	621	0	ENST00000308874.7:c.154T>A	p.Phe52Ile	p.F52I	ENST00000308874		52	Ttc/Atc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609486	81609486	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	112	519	0	ENST00000298171.2:c.1084G>T	p.Glu362Ter	p.E362*	ENST00000298171	NM_000369.2	362	Gag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29663825	29663825	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	140	502	0	ENST00000358273.4:c.6320T>A	p.Val2107Asp	p.V2107D	ENST00000358273	NM_001042492.2	2107	gTt/gAt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78919554	78919554	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	32	355	0	ENST00000306801.3:c.3113T>A	p.Ile1038Asn	p.I1038N	ENST00000306801	NM_020761.2	1038	aTc/aAc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2207621	2207621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	157	664	1	ENST00000398665.3:c.905C>T	p.Ser302Leu	p.S302L	ENST00000398665	NM_032482.2	302	tCg/tTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31019447	31019447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	66	349	0	ENST00000375687.4:c.944A>G	p.His315Arg	p.H315R	ENST00000375687	NM_015338.5	315	cAt/cGt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513220	44513220	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	44	186	0	ENST00000291552.4:c.715C>T	p.Arg239Ter	p.R239*	ENST00000291552	NM_006758.2	239	Cga/Tga																																																																															
NF2	4771	MSKCC	GRCh37	22	30090766	30090766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	123	637	1	ENST00000338641.4:c.1763G>A	p.Arg588Gln	p.R588Q	ENST00000338641	NM_000268.3	588	cGa/cAa																																																																															
MLL3	58508	MSKCC	GRCh37	7	151851386	151851386	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	193	550	0	ENST00000262189.6:c.12105del	p.Ile4036SerfsTer47	p.I4036Sfs*47	ENST00000262189	NM_170606.2	4035	ccC/cc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374949	45374952	+	frameshift_variant	Frame_Shift_Del	DEL	AGTG	AGTG	-			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	76	372	0	ENST00000262160.6:c.891_894del	p.Thr298Ter	p.T298*	ENST00000262160	NM_005901.5	297	ctCACT/ct																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412940	63412940	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	151	382	0	ENST00000330258.3:c.227del	p.Gly76AspfsTer24	p.G76Dfs*24	ENST00000330258	NM_152424.3	76	gGa/ga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230872	66230873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	78	445	0	ENST00000273854.3:c.2098dup	p.Arg700LysfsTer11	p.R700Kfs*11	ENST00000273854	NM_004439.5	700	aga/aAga																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182683411	182683411	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	73	357	0	ENST00000292782.4:c.134del	p.Phe45SerfsTer12	p.F45Sfs*12	ENST00000292782	NM_020640.2	45	tTc/tc																																																																															
MLL2	8085	MSKCC	GRCh37	12	49426027	49426027	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	73	460	0	ENST00000301067.7:c.12461del	p.Gly4154AlafsTer7	p.G4154Afs*7	ENST00000301067	NM_003482.3	4154	gGc/gc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563349	21563349	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	218	723	0	ENST00000382592.4:c.570del	p.Tyr191ThrfsTer49	p.Y191Tfs*49	ENST00000382592	NM_014572.2	190	ccC/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0010932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	35	321	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0010932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	33	953	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0010932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	28	618	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010939-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	361	325	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15995300	15995300	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0010942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	669	494	0	ENST00000268712.3:c.2893A>T	p.Lys965Ter	p.K965*	ENST00000268712	NM_006311.3	965	Aaa/Taa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410405	63410405	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	518	642	0	ENST00000330258.3:c.2762T>C	p.Leu921Pro	p.L921P	ENST00000330258	NM_152424.3	921	cTg/cCg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097821	8097822	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	316	487	0	ENST00000346208.3:c.204dup	p.Arg69GlnfsTer234	p.R69Qfs*234	ENST00000346208		68	gtc/gtCc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549237	21549237	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1362	107	1023	0	ENST00000382592.4:c.3039T>A	p.Asp1013Glu	p.D1013E	ENST00000382592	NM_014572.2	1013	gaT/gaA																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627625	37627625	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	57	625	0	ENST00000447079.4:c.1540del	p.Thr514LeufsTer96	p.T514Lfs*96	ENST00000447079	NM_015083.1	514	Act/ct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	149	443	3	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021828	71021828	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0010979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	58	311	0	ENST00000318789.4:c.1531-1G>A		p.X511_splice	ENST00000318789	NM_032682.5	511																																																																																
PDGFRA	5156	MSKCC	GRCh37	4	55144568	55144568	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	63	474	0	ENST00000257290.5:c.2042A>G	p.Asp681Gly	p.D681G	ENST00000257290	NM_006206.4	681	gAt/gGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112315	115112316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	31	71	0	ENST00000257566.3:c.1424dup	p.Lys476GlnfsTer216	p.K476Qfs*216	ENST00000257566	NM_016569.3	475	ggc/ggGc																																																																															
CDH1	999	MSKCC	GRCh37	16	68863660	68863661	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCTGCCAAT			P-0010979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	75	445	1	ENST00000261769.5:c.2403_2412dup	p.Asp805CysfsTer5	p.D805Cfs*5	ENST00000261769	NM_004360.3	800	cgc/cgCCCTGCCAATc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	178	406	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	116	275	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0010985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	370	709	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630194	187630194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	169	337	0	ENST00000441802.2:c.788C>T	p.Ser263Leu	p.S263L	ENST00000441802	NM_005245.3	263	tCa/tTa																																																																															
TET1	80312	MSKCC	GRCh37	10	70432654	70432654	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0010985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	112	389	0	ENST00000373644.4:c.4676G>A	p.Arg1559His	p.R1559H	ENST00000373644	NM_030625.2	1559	cGt/cAt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368203	45368203	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	394	476	0	ENST00000262160.6:c.1399T>C	p.Ser467Pro	p.S467P	ENST00000262160	NM_005901.5	467	Tca/Cca																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589553	67589579	+	inframe_deletion	In_Frame_Del	DEL	AAGATAATATTGAAGCTGTAGGGAAAA	AAGATAATATTGAAGCTGTAGGGAAAA	-			P-0010985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	65	242	0	ENST00000274335.5:c.1318_1344del	p.Asp440_Lys448del	p.D440_K448del	ENST00000274335		439	gAAGATAATATTGAAGCTGTAGGGAAAAaa/gaa																																																																															
APC	324	MSKCC	GRCh37	5	112174095	112174096	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0010985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	174	419	0	ENST00000257430.4:c.2805_2806del	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tAC/t																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457291	67457292	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	216	497	0	ENST00000327367.4:c.266dup	p.Cys89TrpfsTer22	p.C89Wfs*22	ENST00000327367	NM_005902.3	89	tgc/tGgc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412362	63412362	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	AT			P-0010985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	279	352	0	ENST00000330258.3:c.805delinsAT	p.His269IlefsTer9	p.H269Ifs*9	ENST00000330258	NM_152424.3	269	Cat/ATat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0010995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	292	654	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625251	69625251	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148203315		P-0010995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	125	683	0	ENST00000334134.2:c.542G>A	p.Arg181His	p.R181H	ENST00000334134	NM_005247.2	181	cGc/cAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70360568	70360568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	176	665	1	ENST00000374080.3:c.6128G>A	p.Arg2043His	p.R2043H	ENST00000374080		2043	cGt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249020	55249022	+	missense_variant	Missense_Mutation	ONP	ACG	ACG	TCA			P-0010995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	223	517	0	ENST00000275493.2:c.2318_2320delinsTCA	p.His773_Val774delinsLeuMet	p.H773_V774delinsLM	ENST00000275493	NM_005228.3	773	cACGtg/cTCAtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	320	424	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187510329	187510329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	168	238	0	ENST00000441802.2:c.13184C>T	p.Pro4395Leu	p.P4395L	ENST00000441802	NM_005245.3	4395	cCg/cTg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35867563	35867563	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	592	169	0	ENST00000303115.3:c.377T>C	p.Ile126Thr	p.I126T	ENST00000303115	NM_002185.3	126	aTa/aCa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180050984	180050984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	149	599	0	ENST00000261937.6:c.1499C>T	p.Pro500Leu	p.P500L	ENST00000261937	NM_182925.4	500	cCc/cTc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2963931	2963931	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1103	359	525	0	ENST00000396946.4:c.1876G>C	p.Glu626Gln	p.E626Q	ENST00000396946	NM_032415.4	626	Gag/Cag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8492861	8492861	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	60	338	0	ENST00000356435.5:c.2467+1G>T		p.X823_splice	ENST00000356435		823																																																																																
TBX3	6926	MSKCC	GRCh37	12	115112128	115112128	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	244	471	0	ENST00000257566.3:c.1612G>T	p.Gly538Cys	p.G538C	ENST00000257566	NM_016569.3	538	Ggc/Tgc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434172	121434172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	169	398	1	ENST00000257555.6:c.1063G>T	p.Gly355Cys	p.G355C	ENST00000257555		355	Ggc/Tgc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95569794	95569794	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	311	309	0	ENST00000343455.3:c.3939G>T	p.Glu1313Asp	p.E1313D	ENST00000343455	NM_177438.2	1313	gaG/gaT																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14021929	14021929	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	99	298	0	ENST00000311895.7:c.629A>T	p.Glu210Val	p.E210V	ENST00000311895	NM_005236.2	210	gAa/gTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29685517	29685517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	170	229	0	ENST00000358273.4:c.7990A>G	p.Lys2664Glu	p.K2664E	ENST00000358273	NM_001042492.2	2664	Aag/Gag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942703	44942703	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	284	343	0	ENST00000377967.4:c.3285-2A>T		p.X1095_splice	ENST00000377967	NM_021140.2	1095																																																																																
ARAF	369	MSKCC	GRCh37	X	47430798	47430798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1366	83	601	3	ENST00000377045.4:c.1763G>A	p.Arg588His	p.R588H	ENST00000377045	NM_001654.4	588	cGc/cAc																																																																															
AR	367	MSKCC	GRCh37	X	66765917	66765917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	320	466	0	ENST00000374690.3:c.929C>T	p.Ser310Phe	p.S310F	ENST00000374690	NM_000044.3	310	tCc/tTc																																																																															
MED12	9968	MSKCC	GRCh37	X	70340937	70340937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	324	511	1	ENST00000374080.3:c.670C>A	p.His224Asn	p.H224N	ENST00000374080		224	Cat/Aat																																																																															
RB1	5925	MSKCC	GRCh37	13	48953753	48953762	+	frameshift_variant	Frame_Shift_Del	DEL	GTATTACCGA	GTATTACCGA	-			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	131	243	0	ENST00000267163.4:c.1359_1368del	p.Tyr453Ter	p.Y453*	ENST00000267163	NM_000321.2	452	ttGTATTACCGA/tt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	337	437	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650397	48650397	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	315	343	0	ENST00000376670.3:c.367G>T	p.Asp123Tyr	p.D123Y	ENST00000376670	NM_002049.3	123	Gat/Tat																																																																															
GNA11	2767	MSKCC	GRCh37	19	3118944	3118944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	282	635	2	ENST00000078429.4:c.628C>T	p.Arg210Trp	p.R210W	ENST00000078429	NM_002067.2	210	Cgg/Tgg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55124984	55124984	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0011036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1293	563	726	0	ENST00000257290.5:c.49G>A	p.Gly17Arg	p.G17R	ENST00000257290	NM_006206.4	17	Ggg/Agg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94124424	94124424	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	157	671	1	ENST00000369303.4:c.159T>A	p.Asn53Lys	p.N53K	ENST00000369303	NM_004440.3	53	aaT/aaA																																																																															
RAD21	5885	MSKCC	GRCh37	8	117869691	117869691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1566	246	641	0	ENST00000297338.2:c.503G>A	p.Arg168His	p.R168H	ENST00000297338	NM_006265.2	168	cGt/cAt																																																																															
WT1	7490	MSKCC	GRCh37	11	32456398	32456398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	192	412	2	ENST00000332351.3:c.494C>T	p.Ser165Phe	p.S165F	ENST00000332351	NM_024426.4	165	tCc/tTc																																																																															
ATM	472	MSKCC	GRCh37	11	108205768	108205768	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	292	364	0	ENST00000278616.4:c.8083G>T	p.Gly2695Cys	p.G2695C	ENST00000278616	NM_000051.3	2695	Ggt/Tgt																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134105	41134105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	336	763	3	ENST00000379561.5:c.1523G>A	p.Gly508Asp	p.G508D	ENST00000379561	NM_002015.3	508	gGc/gAc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044713	47044713	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	252	278	4	ENST00000329236.7:c.1879G>T	p.Glu627Ter	p.E627*	ENST00000329236	NM_001204466.1	627	Gag/Tag																																																																															
AKT3	10000	MSKCC	GRCh37	1	243858967	243858968	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0011036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	304	488	0	ENST00000263826.5:c.97_98delinsAT	p.Gly33Ile	p.G33I	ENST00000263826	NM_005465.4	33	GGc/ATc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94124427	94124428	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0011036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	161	684	2	ENST00000369303.4:c.155_156delinsAA	p.Pro52Gln	p.P52Q	ENST00000369303	NM_004440.3	52	cCC/cAA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107008	27107008	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	245	373	2	ENST00000324856.7:c.6619C>T	p.Gln2207Ter	p.Q2207*	ENST00000324856	NM_006015.4	2207	Cag/Tag																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856469	111856469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	210	373	1	ENST00000341259.2:c.520G>A	p.Ala174Thr	p.A174T	ENST00000341259	NM_005475.2	174	Gcc/Acc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41256885	41256885	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0011042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	476	469	1	ENST00000357654.3:c.301T>A	p.Tyr101Asn	p.Y101N	ENST00000357654	NM_007294.3	101	Tat/Aat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180504	56180505	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	510	318	0	ENST00000399503.3:c.3836dup	p.Asn1279LysfsTer5	p.N1279Kfs*5	ENST00000399503	NM_005921.1	1278	aga/agAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168691	56168692	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	547	423	0	ENST00000399503.3:c.1546dup	p.Arg516LysfsTer25	p.R516Kfs*25	ENST00000399503	NM_005921.1	515	-/A																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419920	152419921	+	missense_variant	Missense_Mutation	DNP	TC	TC	AT			P-0011042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	224	434	0	ENST00000206249.3:c.1607_1608delinsAT	p.Leu536His	p.L536H	ENST00000206249	NM_000125.3	536	cTC/cAT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0011043-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			374	46	501	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0011043-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			209	48	706	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
CASP8	841	MSKCC	GRCh37	2	202149876	202149876	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0011043-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			237	19	464	0	ENST00000358485.4:c.1317T>A	p.Tyr439Ter	p.Y439*	ENST00000358485	NM_001080125.1	439	taT/taA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398235	25398235	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011043-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			363	53	575	0	ENST00000256078.4:c.84T>G	p.Phe28Leu	p.F28L	ENST00000256078	NM_033360.2	28	ttT/ttG																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011043-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			227	12	407	0	ENST00000407977.2:c.673C>A	p.Arg225Ser	p.R225S	ENST00000407977		225	Cgc/Agc																																																																															
MLL3	58508	MSKCC	GRCh37	7	151878667	151878667	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011043-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			149	26	427	0	ENST00000262189.6:c.6278del	p.Pro2093HisfsTer13	p.P2093Hfs*13	ENST00000262189	NM_170606.2	2093	cCa/ca																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082317	16082317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1278	213	881	0	ENST00000281043.3:c.131C>T	p.Pro44Leu	p.P44L	ENST00000281043	NM_005378.4	44	cCc/cTc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0011082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	45	361	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945397	17945397	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199861157		P-0011082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1350	95	924	0	ENST00000458235.1:c.2333A>G	p.Asn778Ser	p.N778S	ENST00000458235	NM_000215.3	778	aAt/aGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	-			P-0011100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	18	344	0	ENST00000275493.2:c.2237_2251del	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28929495		P-0011107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	185	568	0	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0011107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	60	418	0	ENST00000269305.4:c.673-2A>C		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
EGFR	1956	MSKCC	GRCh37	7	55233043	55233043	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs139236063		P-0011107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	198	547	0	ENST00000275493.2:c.1793G>T	p.Gly598Val	p.G598V	ENST00000275493	NM_005228.3	598	gGa/gTa																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625282	69625282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	282	894	0	ENST00000334134.2:c.511C>T	p.Arg171Cys	p.R171C	ENST00000334134	NM_005247.2	171	Cgc/Tgc																																																																															
MGA	23269	MSKCC	GRCh37	15	42002948	42002948	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	264	989	0	ENST00000219905.7:c.2485G>T	p.Glu829Ter	p.E829*	ENST00000219905	NM_001164273.1	829	Gaa/Taa																																																																															
ATRX	546	MSKCC	GRCh37	X	76890102	76890102	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1117	235	786	0	ENST00000373344.5:c.4792C>A	p.Leu1598Ile	p.L1598I	ENST00000373344	NM_000489.3	1598	Ctt/Att																																																																															
ATRX	546	MSKCC	GRCh37	X	76939099	76939099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	168	568	0	ENST00000373344.5:c.1649G>T	p.Ser550Ile	p.S550I	ENST00000373344	NM_000489.3	550	aGt/aTt																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45858018	45858019	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0011107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	172	715	0	ENST00000391945.4:c.1634_1635delinsAT	p.Met545Asn	p.M545N	ENST00000391945	NM_000400.3	545	aTG/aAT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0011110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	582	617	1	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
APC	324	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	44	195	0	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa																																																																															
KIT	3815	MSKCC	GRCh37	4	55598037	55598037	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0011110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	154	411	0	ENST00000288135.5:c.2234G>T	p.Gly745Val	p.G745V	ENST00000288135	NM_000222.2	745	gGc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	269	518	0	ENST00000269305.4:c.808T>C	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	Ttt/Ctt																																																																															
CBL	867	MSKCC	GRCh37	11	119145566	119145566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1148	188	480	0	ENST00000264033.4:c.772T>C	p.Trp258Arg	p.W258R	ENST00000264033	NM_005188.3	258	Tgg/Cgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782177		P-0011117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	34	534	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602764	10602764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	60	366	1	ENST00000171111.5:c.814C>T	p.Arg272Cys	p.R272C	ENST00000171111	NM_203500.1	272	Cgc/Tgc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971048	21971053	+	inframe_deletion	In_Frame_Del	DEL	GCCGCG	GCCGCG	-			P-0011117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	26	209	0	ENST00000304494.5:c.305_310del	p.Ala102_Leu104delinsVal	p.A102_L104delinsV	ENST00000304494	NM_000077.4	102	gCGCGGCtg/gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0011120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	408	618	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0011120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	35	211	1	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403208	213403208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	212	557	2	ENST00000342788.4:c.47C>T	p.Ala16Val	p.A16V	ENST00000342788	NM_005235.2	16	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0011120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	253	333	0	ENST00000257430.4:c.3944C>G	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tGa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180045887	180045887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	285	319	1	ENST00000261937.6:c.2884G>A	p.Ala962Thr	p.A962T	ENST00000261937	NM_182925.4	962	Gcc/Acc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827354	72827354	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	429	763	0	ENST00000268489.5:c.9227T>G	p.Met3076Arg	p.M3076R	ENST00000268489	NM_006885.3	3076	aTg/aGg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554551	63554551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	330	450	0	ENST00000307078.5:c.188G>A	p.Gly63Glu	p.G63E	ENST00000307078	NM_004655.3	63	gGg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578448	7578448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	60	290	0	ENST00000269305.4:c.482C>A	p.Ala161Asp	p.A161D	ENST00000269305	NM_001126112.2	161	gCc/gAc																																																																															
PMAIP1	5366	MSKCC	GRCh37	18	57567416	57567416	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	52	351	0	ENST00000316660.6:c.9del	p.Lys4ArgfsTer33	p.K4Rfs*33	ENST00000316660	NM_021127.2	3	Ggg/gg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123310859	123310859	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759750319		P-0011163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	179	636	1	ENST00000358487.5:c.569G>A	p.Arg190Gln	p.R190Q	ENST00000358487	NM_000141.4	190	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0011176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	77	250	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0011176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	93	233	0	ENST00000412916.2:c.165+1del		p.X55_splice	ENST00000412916		55																																																																																
CDH1	999	MSKCC	GRCh37	16	68857523	68857534	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGCTAAGTAAG	TTGCTAAGTAAG	CACTTG			P-0011176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	68	253	0	ENST00000261769.5:c.2158_2164+4delTTGCTAAGTAAinsCACTT		p.X720_splice	ENST00000261769	NM_004360.3	720																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	251	390	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1072	135	553	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482861	67482861	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	99	325	0	ENST00000327367.4:c.1265C>A	p.Ser422Tyr	p.S422Y	ENST00000327367	NM_005902.3	422	tCc/tAc																																																																															
CASP8	841	MSKCC	GRCh37	2	202139650	202139650	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1271	124	509	0	ENST00000358485.4:c.811C>G	p.Pro271Ala	p.P271A	ENST00000358485	NM_001080125.1	271	Cca/Gca																																																																															
SETD2	29072	MSKCC	GRCh37	3	47142970	47142970	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	124	480	0	ENST00000409792.3:c.4993G>T	p.Asp1665Tyr	p.D1665Y	ENST00000409792	NM_014159.6	1665	Gac/Tac																																																																															
KDR	3791	MSKCC	GRCh37	4	55946283	55946283	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	83	337	0	ENST00000263923.4:c.3896C>G	p.Ser1299Ter	p.S1299*	ENST00000263923	NM_002253.2	1299	tCa/tGa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751125	57751125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	38	263	0	ENST00000274289.3:c.1742A>G	p.Glu581Gly	p.E581G	ENST00000274289	NM_006622.3	581	gAg/gGg																																																																															
RAC1	5879	MSKCC	GRCh37	7	6439802	6439802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	83	360	0	ENST00000356142.4:c.328G>C	p.Glu110Gln	p.E110Q	ENST00000356142	NM_018890.3	110	Gaa/Caa																																																																															
MLL3	58508	MSKCC	GRCh37	7	151848645	151848645	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	44	291	0	ENST00000262189.6:c.12548C>G	p.Ser4183Cys	p.S4183C	ENST00000262189	NM_170606.2	4183	tCt/tGt																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518590	69518590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	51	189	0	ENST00000294312.3:c.55G>A	p.Ala19Thr	p.A19T	ENST00000294312	NM_005117.2	19	Gcc/Acc																																																																															
ATM	472	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	70	382	0	ENST00000278616.4:c.9023G>T	p.Arg3008Leu	p.R3008L	ENST00000278616	NM_000051.3	3008	cGt/cTt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641497	18641497	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	79	355	0	ENST00000266497.5:c.2496G>C	p.Gln832His	p.Q832H	ENST00000266497		832	caG/caC																																																																															
AR	367	MSKCC	GRCh37	X	66765877	66765877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1087	95	546	0	ENST00000374690.3:c.889G>A	p.Asp297Asn	p.D297N	ENST00000374690	NM_000044.3	297	Gac/Aac																																																																															
EP300	2033	MSKCC	GRCh37	22	41545867	41545867	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1429	157	779	0	ENST00000263253.7:c.2482del	p.His828IlefsTer22	p.H828Ifs*22	ENST00000263253	NM_001429.3	828	Cat/at																																																																															
ARID2	196528	MSKCC	GRCh37	12	46205334	46205340	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTAAAT	GGTAAAT	-			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	79	264	1	ENST00000334344.6:c.418_418+6del		p.X140_splice	ENST00000334344	NM_152641.2	140																																																																																
NSD1	64324	MSKCC	GRCh37	5	176639160	176639161	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	41	150	0	ENST00000439151.2:c.3760_3761delinsTT	p.Pro1254Phe	p.P1254F	ENST00000439151	NM_022455.4	1254	CCc/TTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178947827	178947827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011193-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	311	580	0	ENST00000263967.3:c.2702G>T	p.Cys901Phe	p.C901F	ENST00000263967	NM_006218.2	901	tGt/tTt																																																																															
TERT	7015	MSKCC	GRCh37	5	1260644	1260644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011193-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	56	577	5	ENST00000310581.5:c.2915G>A	p.Arg972His	p.R972H	ENST00000310581	NM_198253.2	972	cGc/cAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106066	8106066	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011193-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	38	300	0	ENST00000346208.3:c.886C>A	p.Gln296Lys	p.Q296K	ENST00000346208		296	Cag/Aag																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610522	81610522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011193-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	58	610	1	ENST00000298171.2:c.2120G>A	p.Arg707Gln	p.R707Q	ENST00000298171	NM_000369.2	707	cGg/cAg																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664760	138664760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011244-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	27	137	0	ENST00000330315.3:c.805G>T	p.Gly269Cys	p.G269C	ENST00000330315	NM_023067.3	269	Ggc/Tgc																																																																															
ATR	545	MSKCC	GRCh37	3	142177921	142177921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011244-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	70	348	0	ENST00000350721.4:c.7382C>T	p.Thr2461Ile	p.T2461I	ENST00000350721	NM_001184.3	2461	aCt/aTt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021244	31021244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011244-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	51	353	0	ENST00000375687.4:c.1243G>A	p.Asp415Asn	p.D415N	ENST00000375687	NM_015338.5	415	Gat/Aat																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441255	52441255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	447	536	1	ENST00000460680.1:c.515G>T	p.Ser172Ile	p.S172I	ENST00000460680	NM_004656.3	172	aGc/aTc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979201	93979201	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	597	683	0	ENST00000369303.4:c.1627T>G	p.Phe543Val	p.F543V	ENST00000369303	NM_004440.3	543	Ttt/Gtt																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257169	19257169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	229	341	0	ENST00000162023.5:c.794C>T	p.Pro265Leu	p.P265L	ENST00000162023		265	cCg/cTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928078	178928119	+	inframe_deletion	In_Frame_Del	DEL	AGAAGATTTGCTGAACCCTATTGGTGTTACTGGATCAAATCC	AGAAGATTTGCTGAACCCTATTGGTGTTACTGGATCAAATCC	-			P-0011247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	352	412	0	ENST00000263967.3:c.1357_1398del	p.Glu453_Pro466del	p.E453_P466del	ENST00000263967	NM_006218.2	452	ttAGAAGATTTGCTGAACCCTATTGGTGTTACTGGATCAAATCCa/tta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	200	402	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402595	20402595	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	106	312	0	ENST00000346618.3:c.132C>G	p.Phe44Leu	p.F44L	ENST00000346618	NM_001949.4	44	ttC/ttG																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729942	41729942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1365	379	887	0	ENST00000242208.4:c.587G>T	p.Gly196Val	p.G196V	ENST00000242208	NM_002192.2	196	gGc/gTc																																																																															
MLL2	8085	MSKCC	GRCh37	12	49431228	49431228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	199	503	0	ENST00000301067.7:c.9911C>T	p.Pro3304Leu	p.P3304L	ENST00000301067	NM_003482.3	3304	cCc/cTc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112026	115112026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	164	374	0	ENST00000257566.3:c.1714G>T	p.Gly572Trp	p.G572W	ENST00000257566	NM_016569.3	572	Ggg/Tgg																																																																															
NF1	4763	MSKCC	GRCh37	17	29679408	29679408	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	149	488	0	ENST00000358273.4:c.7591C>T	p.Gln2531Ter	p.Q2531*	ENST00000358273	NM_001042492.2	2531	Cag/Tag																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31394081	31394081	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	224	426	0	ENST00000328111.2:c.2368C>G	p.Pro790Ala	p.P790A	ENST00000328111	NM_006892.3	790	Cct/Gct																																																																															
NF1	4763	MSKCC	GRCh37	17	29663380	29663381	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	163	392	0	ENST00000358273.4:c.6037dup	p.Ser2013LysfsTer17	p.S2013Kfs*17	ENST00000358273	NM_001042492.2	2012	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0011260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	227	476	1	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
NF1	4763	MSKCC	GRCh37	17	29553474	29553474	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	244	542	0	ENST00000358273.4:c.2023G>T	p.Gly675Ter	p.G675*	ENST00000358273	NM_001042492.2	675	Gga/Tga																																																																															
NF2	4771	MSKCC	GRCh37	22	30069456	30069456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	132	298	0	ENST00000338641.4:c.1321G>T	p.Ala441Ser	p.A441S	ENST00000338641	NM_000268.3	441	Gct/Tct																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935402	36935402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1243	141	745	0	ENST00000361632.4:c.1325C>T	p.Pro442Leu	p.P442L	ENST00000361632		442	cCt/cTt																																																																															
PARP1	142	MSKCC	GRCh37	1	226567289	226567289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	208	432	0	ENST00000366794.5:c.1597G>T	p.Val533Leu	p.V533L	ENST00000366794	NM_001618.3	533	Gtg/Ttg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671735	30671735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	179	508	0	ENST00000376406.3:c.5225G>T	p.Cys1742Phe	p.C1742F	ENST00000376406	NM_014641.2	1742	tGc/tTc																																																																															
MLL2	8085	MSKCC	GRCh37	12	49433887	49433887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	178	529	0	ENST00000301067.7:c.7666C>T	p.Leu2556Phe	p.L2556F	ENST00000301067	NM_003482.3	2556	Ctc/Ttc																																																																															
NF1	4763	MSKCC	GRCh37	17	29560151	29560151	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	296	450	2	ENST00000358273.4:c.3628G>T	p.Glu1210Ter	p.E1210*	ENST00000358273	NM_001042492.2	1210	Gaa/Taa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306560	41306560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	299	513	2	ENST00000373198.4:c.1099G>A	p.Glu367Lys	p.E367K	ENST00000373198	NM_133170.3	367	Gag/Aag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913220	39913220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1320	176	756	1	ENST00000378444.4:c.4895C>A	p.Ala1632Asp	p.A1632D	ENST00000378444	NM_001123385.1	1632	gCc/gAc																																																																															
AR	367	MSKCC	GRCh37	X	66765580	66765580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	138	553	0	ENST00000374690.3:c.592C>A	p.Gln198Lys	p.Q198K	ENST00000374690	NM_000044.3	198	Cag/Aag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52685769	52685769	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	514	631	0	ENST00000394830.3:c.703delC	p.Gln235ArgfsTer18	p.Q235Rfs*18	ENST00000394830	NM_018313.4	235	Cag/ag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0011280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	30	385	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
EP300	2033	MSKCC	GRCh37	22	41537062	41537062	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	76	724	0	ENST00000263253.7:c.1889A>G	p.Tyr630Cys	p.Y630C	ENST00000263253	NM_001429.3	630	tAc/tGc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177371	56177397	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGTAATGAATGTTTTTTTCTTTCAGG	TGGTAATGAATGTTTTTTTCTTTCAGG	CCTGA			P-0011280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	47	579	0	ENST00000399503.3:c.2370-26_2370delinsCCTGA		p.X790_splice	ENST00000399503	NM_005921.1	790																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	131	383	3	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0011287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	110	265	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0011287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	72	552	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	154	430	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0011287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	87	297	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32184989	32184989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	187	472	1	ENST00000375023.3:c.1679G>A	p.Cys560Tyr	p.C560Y	ENST00000375023	NM_004557.3	560	tGt/tAt																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22160237	22160237	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	176	415	0	ENST00000215832.6:c.394C>G	p.Gln132Glu	p.Q132E	ENST00000215832	NM_002745.4	132	Cag/Gag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0011290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	280	928	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
AR	367	MSKCC	GRCh37	X	66937372	66937372	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	453	707	0	ENST00000374690.3:c.2226G>C	p.Trp742Cys	p.W742C	ENST00000374690	NM_000044.3	742	tgG/tgC																																																																															
SETD2	29072	MSKCC	GRCh37	3	47058722	47058722	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	242	780	0	ENST00000409792.3:c.7556del	p.Lys2519ArgfsTer3	p.K2519Rfs*3	ENST00000409792	NM_014159.6	2519	aAg/ag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921499	39921499	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			66	44	384	1	ENST00000378444.4:c.4321C>T	p.Gln1441Ter	p.Q1441*	ENST00000378444	NM_001123385.1	1441	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	32	345	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0011341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	27	261	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	171	397	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	182	391	0	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593491	48593494	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0011361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	24	323	0	ENST00000342988.3:c.1245_1248del	p.Asp415GlufsTer20	p.D415Efs*20	ENST00000342988	NM_005359.5	414	ttAGAC/tt																																																																															
RB1	5925	MSKCC	GRCh37	13	48953760	48953760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913302		P-0011368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	147	277	1	ENST00000267163.4:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000267163	NM_000321.2	455	Cga/Tga																																																																															
AR	367	MSKCC	GRCh37	X	66937372	66937372	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	252	318	0	ENST00000374690.3:c.2226G>C	p.Trp742Cys	p.W742C	ENST00000374690	NM_000044.3	742	tgG/tgC																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519233	137519233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	435	445	0	ENST00000367739.4:c.1405G>A	p.Asp469Asn	p.D469N	ENST00000367739	NM_000416.2	469	Gat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0011371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	63	373	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4117584	4117584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	36	360	0	ENST00000262948.5:c.136C>T	p.Leu46Phe	p.L46F	ENST00000262948	NM_030662.3	46	Ctt/Ttt																																																																															
CBL	867	MSKCC	GRCh37	11	119149251	119149251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	263	551	0	ENST00000264033.4:c.1259G>A	p.Arg420Gln	p.R420Q	ENST00000264033	NM_005188.3	420	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0011378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	202	385	0	ENST00000269305.4:c.321C>G	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taG																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784399	9784399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	102	517	0	ENST00000377346.4:c.2784G>T	p.Glu928Asp	p.E928D	ENST00000377346	NM_005026.3	928	gaG/gaT																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156841474	156841474	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	175	351	0	ENST00000524377.1:c.777C>A	p.Asn259Lys	p.N259K	ENST00000524377	NM_002529.3	259	aaC/aaA																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266250	198266250	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0011378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	54	208	0	ENST00000335508.6:c.2371-1G>T		p.X791_splice	ENST00000335508	NM_012433.2	791																																																																																
MYOD1	4654	MSKCC	GRCh37	11	17741873	17741873	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	24	41	0	ENST00000250003.3:c.544G>T	p.Gly182Cys	p.G182C	ENST00000250003	NM_002478.4	182	Ggc/Tgc																																																																															
YAP1	10413	MSKCC	GRCh37	11	102100460	102100460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	244	519	0	ENST00000282441.5:c.1304C>T	p.Pro435Leu	p.P435L	ENST00000282441	NM_001130145.2	435	cCc/cTc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121511	2121511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0011378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	111	369	0	ENST00000219476.3:c.1840G>T	p.Ala614Ser	p.A614S	ENST00000219476	NM_000548.3	614	Gcc/Tcc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044973	47044973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	196	209	0	ENST00000329236.7:c.2065C>T	p.Gln689Ter	p.Q689*	ENST00000329236	NM_001204466.1	689	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952030	178952030	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1290	469	696	0	ENST00000263967.3:c.3085G>C	p.Asp1029His	p.D1029H	ENST00000263967	NM_006218.2	1029	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0011388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	56	551	1	ENST00000269305.4:c.376T>G	p.Tyr126Asp	p.Y126D	ENST00000269305	NM_001126112.2	126	Tac/Gac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951889	178951889	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	382	533	0	ENST00000263967.3:c.2944G>C	p.Glu982Gln	p.E982Q	ENST00000263967	NM_006218.2	982	Gag/Cag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952078	178952078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1164	471	644	0	ENST00000263967.3:c.3133G>A	p.Asp1045Asn	p.D1045N	ENST00000263967	NM_006218.2	1045	Gat/Aat																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797222	135797222	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	117	807	0	ENST00000298552.3:c.647T>C	p.Phe216Ser	p.F216S	ENST00000298552	NM_001162426.1	216	tTt/tCt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244523	46244523	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	76	712	0	ENST00000334344.6:c.2617G>T	p.Ala873Ser	p.A873S	ENST00000334344	NM_152641.2	873	Gct/Tct																																																																															
MLL2	8085	MSKCC	GRCh37	12	49431121	49431121	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	63	731	2	ENST00000301067.7:c.10018C>T	p.Gln3340Ter	p.Q3340*	ENST00000301067	NM_003482.3	3340	Cag/Tag																																																																															
ATRX	546	MSKCC	GRCh37	X	76952164	76952164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	83	1030	0	ENST00000373344.5:c.271G>A	p.Glu91Lys	p.E91K	ENST00000373344	NM_000489.3	91	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0011449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	391	536	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187530425	187530425	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0011449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	140	411	0	ENST00000441802.2:c.10118C>G	p.Ser3373Ter	p.S3373*	ENST00000441802	NM_005245.3	3373	tCa/tGa																																																																															
MLL3	58508	MSKCC	GRCh37	7	151846011	151846011	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs183426496		P-0011449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	232	315	1	ENST00000262189.6:c.13001G>A	p.Arg4334Gln	p.R4334Q	ENST00000262189	NM_170606.2	4334	cGg/cAg																																																																															
ATM	472	MSKCC	GRCh37	11	108202650	108202650	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	208	284	1	ENST00000278616.4:c.7674T>A	p.Phe2558Leu	p.F2558L	ENST00000278616	NM_000051.3	2558	ttT/ttA																																																																															
PALB2	79728	MSKCC	GRCh37	16	23634378	23634378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	203	498	0	ENST00000261584.4:c.2908C>T	p.Leu970Phe	p.L970F	ENST00000261584	NM_024675.3	970	Ctt/Ttt																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46509397	46509764	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGAGGGAGTCGTTGTGCTGAACCAAGGATGTCTGCTGGTAATGGAGCACTAGCTCCTTCAGAGAGCTGTACAGGTTGTAGGGCTCTGCAAAGCCATAGCCCCGAGCAGTGCTGTAGATCACACAGTGCTTCACTTCCCCATCGGCCCTGCAATGACAAACCACAGAAGAAATGTTAAGGTAGGTAACAATAGATAAAAGGACACTAAATGGCCAGAAGTCTGAGAGCAATTGTTATGCAAACAAGTGTTTTTTGTTAACCAGGCAAAGCTTGTGAAATTGCGTTCCCATTCCCTACAGACTTGGCCACAGATACGGGTGTTAAAACAACCACAAATGTAAGGGTTTATTTATTTCTTTTTTTTTTTT	TTGAGGGAGTCGTTGTGCTGAACCAAGGATGTCTGCTGGTAATGGAGCACTAGCTCCTTCAGAGAGCTGTACAGGTTGTAGGGCTCTGCAAAGCCATAGCCCCGAGCAGTGCTGTAGATCACACAGTGCTTCACTTCCCCATCGGCCCTGCAATGACAAACCACAGAAGAAATGTTAAGGTAGGTAACAATAGATAAAAGGACACTAAATGGCCAGAAGTCTGAGAGCAATTGTTATGCAAACAAGTGTTTTTTGTTAACCAGGCAAAGCTTGTGAAATTGCGTTCCCATTCCCTACAGACTTGGCCACAGATACGGGTGTTAAAACAACCACAAATGTAAGGGTTTATTTATTTCTTTTTTTTTTTT	-			P-0011449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	70	427	0	ENST00000262741.5:c.1188-221_1334del		p.X396_splice	ENST00000262741	NM_003629.3	396																																																																																
PTEN	5728	MSKCC	GRCh37	10	89720869	89720870	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0011449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	182	201	0	ENST00000371953.3:c.1022_1023del	p.Phe341Ter	p.F341*	ENST00000371953	NM_000314.4	340	aaTTtt/aatt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	39	364	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
ALK	238	MSKCC	GRCh37	2	29449796	29449796	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	56	362	0	ENST00000389048.3:c.3059C>G	p.Ser1020Cys	p.S1020C	ENST00000389048	NM_004304.4	1020	tCc/tGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100429	8100429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1069	59	606	0	ENST00000346208.3:c.403C>A	p.Pro135Thr	p.P135T	ENST00000346208		135	Ccg/Acg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18715770	18715770	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	49	322	0	ENST00000266497.5:c.3601A>C	p.Thr1201Pro	p.T1201P	ENST00000266497		1201	Aca/Cca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486104	8486104	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	58	483	0	ENST00000356435.5:c.2713del	p.Glu905ArgfsTer4	p.E905Rfs*4	ENST00000356435		905	Gag/ag																																																																															
AKT1	207	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	314	579	0	ENST00000349310.3:c.155T>G	p.Leu52Arg	p.L52R	ENST00000349310	NM_001014432.1	52	cTc/cGc																																																																															
CBFB	865	MSKCC	GRCh37	16	67063321	67063321	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	126	252	0	ENST00000412916.2:c.11T>G	p.Val4Gly	p.V4G	ENST00000412916		4	gTc/gGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	90	291	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs757274881		P-0011469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	120	307	2	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48586235	48586235	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0011469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	89	240	0	ENST00000342988.3:c.905-1G>A		p.X302_splice	ENST00000342988	NM_005359.5	302																																																																																
INPP4B	8821	MSKCC	GRCh37	4	143129616	143129616	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	184	279	0	ENST00000262992.4:c.1034A>G	p.His345Arg	p.H345R	ENST00000262992	NM_001101669.1	345	cAt/cGt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33286530	33286530	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	126	148	0	ENST00000374542.5:c.2213A>T	p.Asp738Val	p.D738V	ENST00000374542	NM_001141970.1	738	gAc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	47	885	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0011513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	38	802	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593477	48593477	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	74	893	3	ENST00000342988.3:c.1228C>T	p.Gln410Ter	p.Q410*	ENST00000342988	NM_005359.5	410	Cag/Tag																																																																															
MDM2	4193	MSKCC	GRCh37	12	69222657	69222657	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1124	65	1074	0	ENST00000462284.1:c.630G>T	p.Glu210Asp	p.E210D	ENST00000462284	NM_002392.5	210	gaG/gaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	210	437	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0011533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	28	203	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0011533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	129	327	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256439	115256439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	144	527	0	ENST00000369535.4:c.272C>T	p.Ala91Val	p.A91V	ENST00000369535	NM_002524.4	91	gCg/gTg																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652206	48652206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1214	133	641	0	ENST00000376670.3:c.877C>T	p.Arg293Trp	p.R293W	ENST00000376670	NM_002049.3	293	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175249	112175274	+	frameshift_variant	Frame_Shift_Del	DEL	GTGAGCGAAGTTCCAGCAGTGTCACA	GTGAGCGAAGTTCCAGCAGTGTCACA	-			P-0011533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	74	309	0	ENST00000257430.4:c.3959_3984del	p.Val1320AlafsTer3	p.V1320Afs*3	ENST00000257430	NM_000038.5	1320	GTGAGCGAAGTTCCAGCAGTGTCACAg/g																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145430	58145430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011543-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	64	411	0	ENST00000257904.6:c.71G>T	p.Arg24Leu	p.R24L	ENST00000257904	NM_000075.3	24	cGt/cTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249020	55249022	+	missense_variant	Missense_Mutation	ONP	ACG	ACG	TCA			P-0011543-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	105	416	0	ENST00000275493.2:c.2318_2320delinsTCA	p.His773_Val774delinsLeuMet	p.H773_V774delinsLM	ENST00000275493	NM_005228.3	773	cACGtg/cTCAtg																																																																															
B2M	567	MSKCC	GRCh37	15	45007706	45007707	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCATCCG			P-0011543-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	29	339	0	ENST00000558401.1:c.154_160dup	p.Asp54AlafsTer5	p.D54Afs*5	ENST00000558401	NM_004048.2	51	-/CCATCCG																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238758086		P-0012010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	103	446	0	ENST00000358026.2:c.2729C>T	p.Thr910Met	p.T910M	ENST00000358026	NM_001128849.1	910	aCg/aTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	21	103	0	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0012010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	534	375	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
TP53	7157	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0012010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	78	284	0	ENST00000269305.4:c.365_366delTG	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																															
MTOR	2475	MSKCC	GRCh37	1	11317165	11317165	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	108	509	0	ENST00000361445.4:c.329A>C	p.Tyr110Ser	p.Y110S	ENST00000361445	NM_004958.3	110	tAt/tCt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968239	134968239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	110	421	1	ENST00000398015.3:c.2752G>A	p.Asp918Asn	p.D918N	ENST00000398015	NM_004441.4	918	Gac/Aac																																																																															
APC	324	MSKCC	GRCh37	5	112116536	112116536	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200740020		P-0012010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	54	277	0	ENST00000257430.4:c.581G>A	p.Arg194Lys	p.R194K	ENST00000257430	NM_000038.5	194	aGg/aAg																																																																															
MLL	4297	MSKCC	GRCh37	11	118375865	118375865	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200739718		P-0012010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	82	322	0	ENST00000534358.1:c.9258G>T	p.Gln3086His	p.Q3086H	ENST00000534358	NM_005933.3	3086	caG/caT																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713130	30713131	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	AT			P-0012010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	31	130	0	ENST00000359013.4:c.534_535dup	p.Asn179IlefsTer10	p.N179Ifs*10	ENST00000359013	NM_001024847.2	177	gaa/gaATa																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273806	18273806	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	230	518	0	ENST00000222254.8:c.1139T>A	p.Val380Asp	p.V380D	ENST00000222254	NM_005027.3	380	gTc/gAc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061196	38061197	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTT			P-0012030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	151	212	0	ENST00000250448.2:c.790_792dupAAG	p.Lys264dup	p.K264dup	ENST00000250448	NM_004496.3	264	-/AAG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	115	511	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645694	12645694	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs3730271		P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	91	410	0	ENST00000251849.4:c.775T>C	p.Ser259Pro	p.S259P	ENST00000251849	NM_002880.3	259	Tcc/Ccc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073881	8073881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1348	87	830	1	ENST00000377482.5:c.778C>A	p.Pro260Thr	p.P260T	ENST00000377482	NM_018948.3	260	Cca/Aca																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259464	89259464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	89	604	0	ENST00000336596.2:c.608C>A	p.Pro203Gln	p.P203Q	ENST00000336596	NM_005233.5	203	cCa/cAa																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119642260	119642260	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	127	462	0	ENST00000316626.5:c.437A>G	p.Tyr146Cys	p.Y146C	ENST00000316626		146	tAt/tGt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93953207	93953207	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	113	665	1	ENST00000369303.4:c.2934G>T	p.Met978Ile	p.M978I	ENST00000369303	NM_004440.3	978	atG/atT																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729357	41729357	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1371	74	783	0	ENST00000242208.4:c.1172G>T	p.Cys391Phe	p.C391F	ENST00000242208	NM_002192.2	391	tGt/tTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8633395	8633395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	100	557	0	ENST00000356435.5:c.274G>A	p.Asp92Asn	p.D92N	ENST00000356435		92	Gat/Aat																																																																															
PGR	5241	MSKCC	GRCh37	11	100999731	100999731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	73	694	1	ENST00000325455.5:c.71G>T	p.Gly24Val	p.G24V	ENST00000325455	NM_001202474.3	24	gGa/gTa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472489	88472489	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144852342		P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	61	511	0	ENST00000360948.2:c.2066C>T	p.Ala689Val	p.A689V	ENST00000360948	NM_001012338.2	689	gCg/gTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991344	72991344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148024459		P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1116	70	647	0	ENST00000268489.5:c.2701G>A	p.Ala901Thr	p.A901T	ENST00000268489	NM_006885.3	901	Gcc/Acc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15284960	15284960	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	108	393	0	ENST00000263388.2:c.4655A>T	p.Gln1552Leu	p.Q1552L	ENST00000263388	NM_000435.2	1552	cAg/cTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599938	10599939	+	stop_gained	Nonsense_Mutation	DNP	GA	GA	TT			P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	105	585	1	ENST00000171111.5:c.1637_1638delinsAA	p.Phe546Ter	p.F546*	ENST00000171111	NM_203500.1	546	tTC/tAA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	53	287	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0012066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	54	461	2	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17127425	17127425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	40	369	0	ENST00000285071.4:c.429C>A	p.Phe143Leu	p.F143L	ENST00000285071	NM_144997.5	143	ttC/ttA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0012083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	163	466	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	120	724	0	ENST00000269305.4:c.643A>C	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	Agt/Cgt																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225685	26225685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	117	1243	2	ENST00000360408.1:c.303G>T	p.Leu101Phe	p.L101F	ENST00000360408	NM_003532.2	101	ttG/ttT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	49	427	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117700232	117700232	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	61	540	0	ENST00000368508.3:c.2587C>G	p.Arg863Gly	p.R863G	ENST00000368508	NM_002944.2	863	Cgg/Ggg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	196	523	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0012147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	147	510	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24175836	24175837	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0012147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	186	617	0	ENST00000263121.7:c.1066_1067del	p.Leu356AspfsTer4	p.L356Dfs*4	ENST00000263121	NM_003073.3	355	aCT/a																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978321	2978321	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs138920531		P-0012147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	182	559	0	ENST00000396946.4:c.1009C>T	p.Arg337Ter	p.R337*	ENST00000396946	NM_032415.4	337	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128201	112128201	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0012147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	222	633	0	ENST00000257430.4:c.704T>A	p.Leu235Ter	p.L235*	ENST00000257430	NM_000038.5	235	tTa/tAa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411540	63411540	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1074	569	902	1	ENST00000330258.3:c.1627G>T	p.Glu543Ter	p.E543*	ENST00000330258	NM_152424.3	543	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951993	178951995	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0012147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	189	550	0	ENST00000263967.3:c.3051_3053del	p.Asp1018del	p.D1018del	ENST00000263967	NM_006218.2	1016	ttTGAt/ttt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120139	70120140	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0012147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	230	171	0	ENST00000245479.2:c.1143_1144dupGC	p.Leu382ArgfsTer2	p.L382Rfs*2	ENST00000245479	NM_000346.3	381	acg/aCGcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0012197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	180	607	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	53	523	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EED	8726	MSKCC	GRCh37	11	85967502	85967502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	18	444	0	ENST00000263360.6:c.500G>T	p.Gly167Val	p.G167V	ENST00000263360	NM_003797.3	167	gGa/gTa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591881	48591882	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	72	709	0	ENST00000342988.3:c.1045dup	p.Thr349AsnfsTer3	p.T349Nfs*3	ENST00000342988	NM_005359.5	348	-/A																																																																															
VHL	7428	MSKCC	GRCh37	3	10183843	10183860	+	inframe_deletion	In_Frame_Del	DEL	CACGGGCCGCCGCATCCA	CACGGGCCGCCGCATCCA	-			P-0012231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	18	268	0	ENST00000256474.2:c.314_331del	p.Thr105_His110del	p.T105_H110del	ENST00000256474	NM_000551.3	104	ggCACGGGCCGCCGCATCCAc/ggc																																																																															
VHL	7428	MSKCC	GRCh37	3	10188265	10188275	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGCCATCTC	TGTGCCATCTC	G			P-0012231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	122	722	0	ENST00000256474.2:c.408_418delinsG	p.Phe136LeufsTer20	p.F136Lfs*20	ENST00000256474	NM_000551.3	136	ttTGTGCCATCTCtc/ttGtc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	64	514	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61705993	61705993	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	64	596	0	ENST00000401558.2:c.3178T>G	p.Phe1060Val	p.F1060V	ENST00000401558	NM_003400.3	1060	Ttt/Gtt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729917	30729917	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	47	305	1	ENST00000359013.4:c.1513G>T	p.Glu505Ter	p.E505*	ENST00000359013	NM_001024847.2	505	Gag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1219389	1219389	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	77	544	0	ENST00000326873.7:c.443del	p.Phe148SerfsTer13	p.F148Sfs*13	ENST00000326873	NM_000455.4	147	cgT/cg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	99	417	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112174152	112174152	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0012268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	243	452	0	ENST00000257430.4:c.2861T>A	p.Leu954Ter	p.L954*	ENST00000257430	NM_000038.5	954	tTa/tAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0012268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1463	242	853	2	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0012268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	104	353	1	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
EP300	2033	MSKCC	GRCh37	22	41545855	41545855	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	217	653	1	ENST00000263253.7:c.2470C>T	p.Gln824Ter	p.Q824*	ENST00000263253	NM_001429.3	824	Caa/Taa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38968087	38968087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	116	489	2	ENST00000357387.3:c.1018C>T	p.Pro340Ser	p.P340S	ENST00000357387	NM_152756.3	340	Cct/Tct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624269	89624269	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	59	194	0	ENST00000371953.3:c.43A>G	p.Arg15Gly	p.R15G	ENST00000371953	NM_000314.4	15	Aga/Gga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862932	9862932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	110	362	0	ENST00000330684.3:c.2371C>A	p.Leu791Met	p.L791M	ENST00000330684	NM_001134407.1	791	Ctg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	AA			P-0012268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	45	243	0	ENST00000257430.4:c.3916delinsAA	p.Glu1306LysfsTer9	p.E1306Kfs*9	ENST00000257430	NM_000038.5	1306	Gaa/AAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	409	565	1	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc																																																																															
ATM	472	MSKCC	GRCh37	11	108196896	108196896	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56009889		P-0012281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	373	610	1	ENST00000278616.4:c.6919C>T	p.Leu2307Phe	p.L2307F	ENST00000278616	NM_000051.3	2307	Ctt/Ttt																																																																															
APC	324	MSKCC	GRCh37	5	112174229	112174229	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0012281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	503	819	0	ENST00000257430.4:c.2938A>T	p.Lys980Ter	p.K980*	ENST00000257430	NM_000038.5	980	Aaa/Taa																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0012288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	236	463	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0012306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	134	412	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0012306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	211	512	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112179344	112179344	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	94	562	0	ENST00000257430.4:c.8053A>G	p.Ser2685Gly	p.S2685G	ENST00000257430	NM_000038.5	2685	Agt/Ggt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	207	555	0	ENST00000349496.5:c.100G>C	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Cga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	36	339	0	ENST00000250448.2:c.781C>G	p.Arg261Gly	p.R261G	ENST00000250448	NM_004496.3	261	Cgc/Ggc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2954957	2954957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	88	484	0	ENST00000396946.4:c.2753G>A	p.Arg918Gln	p.R918Q	ENST00000396946	NM_032415.4	918	cGg/cAg																																																																															
PGR	5241	MSKCC	GRCh37	11	100962491	100962491	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	213	533	0	ENST00000325455.5:c.1906G>T	p.Gly636Cys	p.G636C	ENST00000325455	NM_001202474.3	636	Ggt/Tgt																																																																															
ATM	472	MSKCC	GRCh37	11	108205768	108205768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	141	401	0	ENST00000278616.4:c.8083G>A	p.Gly2695Ser	p.G2695S	ENST00000278616	NM_000051.3	2695	Ggt/Agt																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127920632	127920647	+	frameshift_variant	Frame_Shift_Del	DEL	ACTATAGTAACCTCTG	ACTATAGTAACCTCTG	-			P-0012326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	77	724	0	ENST00000373547.4:c.252_267del	p.Arg85TrpfsTer10	p.R85Wfs*10	ENST00000373547	NM_002721.4	84	gaCAGAGGTTACTATAGT/ga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157150377	157150377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	88	579	0	ENST00000346085.5:c.1559C>T	p.Pro520Leu	p.P520L	ENST00000346085	NM_020732.3	520	cCa/cTa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984598	72984598	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0012332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	237	944	1	ENST00000268489.5:c.2986A>T	p.Lys996Ter	p.K996*	ENST00000268489	NM_006885.3	996	Aag/Tag																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40369482	40369482	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0012332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	117	928	0	ENST00000293328.3:c.1170T>G	p.Asn390Lys	p.N390K	ENST00000293328	NM_012448.3	390	aaT/aaG																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44936066	44936067	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	73	412	0	ENST00000377967.4:c.2830dup	p.Tyr944LeufsTer5	p.Y944Lfs*5	ENST00000377967	NM_021140.2	943	att/aTtt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39911597	39911597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	168	704	1	ENST00000378444.4:c.5033G>A	p.Arg1678His	p.R1678H	ENST00000378444	NM_001123385.1	1678	cGc/cAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28895658	28895658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	150	695	0	ENST00000282397.4:c.3116G>A	p.Cys1039Tyr	p.C1039Y	ENST00000282397	NM_002019.4	1039	tGt/tAt																																																																															
CDH1	999	MSKCC	GRCh37	16	68849641	68849642	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	ATA			P-0012362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	127	490	0	ENST00000261769.5:c.1546_1547insAAT	p.Thr515_Phe516insTer	p.T515_F516ins*	ENST00000261769	NM_004360.3	515	aca/acATAa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117361	115117362	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0012362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	174	774	0	ENST00000257566.3:c.812dupA	p.Tyr271Ter	p.Y271*	ENST00000257566	NM_016569.3	271	tac/taAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0012365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	34	644	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	28	441	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0012372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	79	311	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527502	157527502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	195	603	0	ENST00000346085.5:c.5227G>A	p.Glu1743Lys	p.E1743K	ENST00000346085	NM_020732.3	1743	Gaa/Aaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711902	89711902	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	89	680	0	ENST00000371953.3:c.520T>G	p.Tyr174Asp	p.Y174D	ENST00000371953	NM_000314.4	174	Tat/Gat																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717723	89717724	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAC			P-0012372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	72	530	0	ENST00000371953.3:c.748_749insCCAC	p.Cys250SerfsTer4	p.C250Sfs*4	ENST00000371953	NM_000314.4	250	tgt/tCCACgt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061250	38061250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	312	718	0	ENST00000250448.2:c.739C>T	p.His247Tyr	p.H247Y	ENST00000250448	NM_004496.3	247	Cac/Tac																																																																															
ATM	472	MSKCC	GRCh37	11	108204661	108204661	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0012375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	268	497	0	ENST00000278616.4:c.7976T>G	p.Leu2659Ter	p.L2659*	ENST00000278616	NM_000051.3	2659	tTa/tGa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830688	72830688	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	294	1369	2	ENST00000268489.5:c.5893C>T	p.Gln1965Ter	p.Q1965*	ENST00000268489	NM_006885.3	1965	Cag/Tag																																																																															
TERT	7015	MSKCC	GRCh37	5	1260624	1260624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	437	733	0	ENST00000310581.5:c.2935C>T	p.Arg979Trp	p.R979W	ENST00000310581	NM_198253.2	979	Cgg/Tgg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575084	64575084	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	470	672	0	ENST00000337652.1:c.738T>G	p.Cys246Trp	p.C246W	ENST00000337652	NM_130803.2	246	tgT/tgG																																																																															
RB1	5925	MSKCC	GRCh37	13	48939105	48939105	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0012382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	180	375	0	ENST00000267163.4:c.937G>T	p.Glu313Ter	p.E313*	ENST00000267163	NM_000321.2	313	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	37	565	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919310	178919310	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0012395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	48	292	1	ENST00000263967.3:c.795T>G	p.Tyr265Ter	p.Y265*	ENST00000263967	NM_006218.2	265	taT/taG																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101099	27101099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	253	616	1	ENST00000324856.7:c.4381C>T	p.Arg1461Ter	p.R1461*	ENST00000324856	NM_006015.4	1461	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398123121		P-0012399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	107	401	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112170777	112170777	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	385	633	1	ENST00000257430.4:c.1873C>T	p.Gln625Ter	p.Q625*	ENST00000257430	NM_000038.5	625	Cag/Tag																																																																															
ACVR1	90	MSKCC	GRCh37	2	158622579	158622579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	597	827	0	ENST00000263640.3:c.920G>A	p.Arg307Gln	p.R307Q	ENST00000263640	NM_001105.4	307	cGa/cAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711026	114711026	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	209	328	0	ENST00000543371.1:c.250G>T	p.Glu84Ter	p.E84*	ENST00000543371	NM_001198531.1	84	Gaa/Taa																																																																															
MLL	4297	MSKCC	GRCh37	11	118363824	118363824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	222	545	1	ENST00000534358.1:c.5057G>A	p.Arg1686His	p.R1686H	ENST00000534358	NM_005933.3	1686	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578376	7578376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	262	343	0	ENST00000269305.4:c.554delG	p.Ser185ThrfsTer62	p.S185Tfs*62	ENST00000269305	NM_001126112.2	185	aGc/ac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089647	27089657	+	frameshift_variant	Frame_Shift_Del	DEL	ATGGCCCTAAC	ATGGCCCTAAC	-			P-0012399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	182	575	1	ENST00000324856.7:c.2609_2619del	p.Pro870GlnfsTer62	p.P870Qfs*62	ENST00000324856	NM_006015.4	868	tATGGCCCTAAC/t																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	16	441	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0012413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	26	656	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0012427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	20	741	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
RB1	5925	MSKCC	GRCh37	13	48878116	48878116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	11	171	1	ENST00000267163.4:c.68C>T	p.Pro23Leu	p.P23L	ENST00000267163	NM_000321.2	23	cCg/cTg																																																																															
SMO	6608	MSKCC	GRCh37	7	128846377	128846377	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	29	899	2	ENST00000249373.3:c.1213C>A	p.Leu405Met	p.L405M	ENST00000249373	NM_005631.4	405	Ctg/Atg																																																																															
MLL3	58508	MSKCC	GRCh37	7	151874842	151874842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	23	636	0	ENST00000262189.6:c.7696C>T	p.Pro2566Ser	p.P2566S	ENST00000262189	NM_170606.2	2566	Cct/Tct																																																																															
ARAF	369	MSKCC	GRCh37	X	47430296	47430296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	37	676	0	ENST00000377045.4:c.1571G>T	p.Arg524Leu	p.R524L	ENST00000377045	NM_001654.4	524	cGt/cTt																																																																															
AR	367	MSKCC	GRCh37	X	66766194	66766213	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCGCAGTGCCGCTATG	GGCGGCGCAGTGCCGCTATG	-			P-0012427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	12	221	0	ENST00000374690.3:c.1208_1227del	p.Ala403GlyfsTer92	p.A403Gfs*92	ENST00000374690	NM_000044.3	402	gcGGCGGCGCAGTGCCGCTATGgg/gcgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	309	377	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0012430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	128	421	0	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974699	21974699	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	81	480	0	ENST00000304494.5:c.128del	p.Ser43IlefsTer10	p.S43Ifs*10	ENST00000304494	NM_000077.4	43	aGt/at																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092794	27092794	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	35	503	0	ENST00000324856.7:c.2815G>T	p.Gly939Cys	p.G939C	ENST00000324856	NM_006015.4	939	Ggc/Tgc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212484000	212484000	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	32	359	0	ENST00000342788.4:c.2203G>T	p.Gly735Cys	p.G735C	ENST00000342788	NM_005235.2	735	Ggt/Tgt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541438	187541438	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	48	389	0	ENST00000441802.2:c.6302G>T	p.Arg2101Leu	p.R2101L	ENST00000441802	NM_005245.3	2101	cGc/cTc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984081	2984081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	17	327	0	ENST00000396946.4:c.449G>A	p.Cys150Tyr	p.C150Y	ENST00000396946	NM_032415.4	150	tGc/tAc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78727885	78727885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	96	473	0	ENST00000306801.3:c.730G>T	p.Ala244Ser	p.A244S	ENST00000306801	NM_020761.2	244	Gca/Tca																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78727895	78727895	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	91	461	0	ENST00000306801.3:c.740A>T	p.Glu247Val	p.E247V	ENST00000306801	NM_020761.2	247	gAg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0012504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	252	405	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578401	7578402	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			P-0012504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	96	342	0	ENST00000269305.4:c.526_528dupTGC	p.Cys176dup	p.C176dup	ENST00000269305	NM_001126112.2	176	-/TGC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	170	467	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145430	58145430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	90	419	0	ENST00000257904.6:c.71G>T	p.Arg24Leu	p.R24L	ENST00000257904	NM_000075.3	24	cGt/cTt																																																																															
KIT	3815	MSKCC	GRCh37	4	55561897	55561897	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	87	417	0	ENST00000288135.5:c.287C>A	p.Thr96Lys	p.T96K	ENST00000288135	NM_000222.2	96	aCg/aAg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149433967	149433967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	54	441	0	ENST00000286301.3:c.2681C>T	p.Ala894Val	p.A894V	ENST00000286301	NM_005211.3	894	gCc/gTc																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197301	26197301	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1609	125	925	0	ENST00000356476.2:c.178G>T	p.Glu60Ter	p.E60*	ENST00000356476		60	Gag/Tag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672636	30672636	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	330	545	0	ENST00000376406.3:c.4324G>C	p.Val1442Leu	p.V1442L	ENST00000376406	NM_014641.2	1442	Gtg/Ctg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2963951	2963951	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1238	132	575	0	ENST00000396946.4:c.1856C>A	p.Ser619Tyr	p.S619Y	ENST00000396946	NM_032415.4	619	tCc/tAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268948	55268948	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	130	553	0	ENST00000275493.2:c.3014A>T	p.Glu1005Val	p.E1005V	ENST00000275493	NM_005228.3	1005	gAa/gTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8633397	8633397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	52	524	0	ENST00000356435.5:c.272G>A	p.Arg91Lys	p.R91K	ENST00000356435		91	aGg/aAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983292	15983292	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	105	432	0	ENST00000268712.3:c.3487G>T	p.Gly1163Cys	p.G1163C	ENST00000268712	NM_006311.3	1163	Ggc/Tgc																																																																															
NF1	4763	MSKCC	GRCh37	17	29576015	29576015	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	167	393	2	ENST00000358273.4:c.3988G>T	p.Glu1330Ter	p.E1330*	ENST00000358273	NM_001042492.2	1330	Gag/Tag																																																																															
AR	367	MSKCC	GRCh37	X	66942737	66942737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1372	108	876	1	ENST00000374690.3:c.2518G>T	p.Asp840Tyr	p.D840Y	ENST00000374690	NM_000044.3	840	Gat/Tat																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0012554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	286	432	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0012554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	199	360	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KIT	3815	MSKCC	GRCh37	4	55593431	55593431	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs72550822		P-0012554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	128	678	1	ENST00000288135.5:c.1588G>A	p.Val530Ile	p.V530I	ENST00000288135	NM_000222.2	530	Gta/Ata																																																																															
FLT4	2324	MSKCC	GRCh37	5	180038369	180038369	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	245	589	2	ENST00000261937.6:c.3648C>A	p.Asp1216Glu	p.D1216E	ENST00000261937	NM_182925.4	1216	gaC/gaA																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053021	180053021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	87	516	0	ENST00000261937.6:c.1269G>T	p.Gln423His	p.Q423H	ENST00000261937	NM_182925.4	423	caG/caT																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372232	55372232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	172	357	0	ENST00000297316.4:c.922G>A	p.Gly308Arg	p.G308R	ENST00000297316	NM_022454.3	308	Ggg/Agg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87285788	87285788	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs76060730		P-0012554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	80	651	0	ENST00000277120.3:c.125G>A	p.Arg42Gln	p.R42Q	ENST00000277120		42	cGg/cAg																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66522048	66522048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	75	229	0	ENST00000358598.2:c.703C>T	p.Leu235Phe	p.L235F	ENST00000358598	NM_212471.2	235	Ctc/Ttc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604786	48604791	+	inframe_deletion	In_Frame_Del	DEL	AGACGA	AGACGA	-			P-0012554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	139	502	0	ENST00000342988.3:c.1610_1615del	p.Asp537_Glu538del	p.D537_E538del	ENST00000342988	NM_005359.5	536	ctAGACGAa/cta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	404	409	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0012577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	212	758	2	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0012577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	338	717	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	428	571	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	84	321	0				ENST00000310581	NM_198253.2																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0012580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	22	285	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578466	7578466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	220	638	0	ENST00000269305.4:c.464C>T	p.Thr155Ile	p.T155I	ENST00000269305	NM_001126112.2	155	aCc/aTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952139	178952139	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	94	429	0	ENST00000263967.3:c.3194A>T	p.His1065Leu	p.H1065L	ENST00000263967	NM_006218.2	1065	cAt/cTt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863306	57863306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	117	1061	2	ENST00000228682.2:c.1401G>A	p.Met467Ile	p.M467I	ENST00000228682	NM_005269.2	467	atG/atA																																																																															
TOP1	7150	MSKCC	GRCh37	20	39750419	39750419	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	98	655	1	ENST00000361337.2:c.2036del	p.Lys679ArgfsTer5	p.K679Rfs*5	ENST00000361337	NM_003286.2	678	gcA/gc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	876	560	1	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
EP300	2033	MSKCC	GRCh37	22	41573321	41573321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1163	320	645	1	ENST00000263253.7:c.5606C>T	p.Pro1869Leu	p.P1869L	ENST00000263253	NM_001429.3	1869	cCc/cTc																																																																															
EP300	2033	MSKCC	GRCh37	22	41566521	41566521	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	972	530	0	ENST00000263253.7:c.4398G>C	p.Trp1466Cys	p.W1466C	ENST00000263253	NM_001429.3	1466	tgG/tgC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916957	178916957	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1960	2145	549	0	ENST00000263967.3:c.344G>C	p.Arg115Pro	p.R115P	ENST00000263967	NM_006218.2	115	cGa/cCa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971110	21971110	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	1145	319	0	ENST00000304494.5:c.248A>G	p.His83Arg	p.H83R	ENST00000304494	NM_000077.4	83	cAc/cGc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448601	89448601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1104	211	451	2	ENST00000336596.2:c.1565G>A	p.Arg522His	p.R522H	ENST00000336596	NM_005233.5	522	cGc/cAc																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858189	27858189	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	1175	784	3	ENST00000359303.2:c.382G>T	p.Ala128Ser	p.A128S	ENST00000359303	NM_003535.2	128	Gcg/Tcg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455095	50455095	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	184	386	0	ENST00000331340.3:c.642C>A	p.Ser214Arg	p.S214R	ENST00000331340	NM_006060.4	214	agC/agA																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372173	55372173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	148	201	0	ENST00000297316.4:c.863C>T	p.Ala288Val	p.A288V	ENST00000297316	NM_022454.3	288	gCg/gTg																																																																															
PGR	5241	MSKCC	GRCh37	11	100999111	100999111	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	724	777	0	ENST00000325455.5:c.691G>C	p.Glu231Gln	p.E231Q	ENST00000325455	NM_001202474.3	231	Gag/Cag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916251	9916251	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	467	471	0	ENST00000330684.3:c.2038T>C	p.Phe680Leu	p.F680L	ENST00000330684	NM_001134407.1	680	Ttt/Ctt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435749	56435749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	315	231	0	ENST00000407977.2:c.1388C>T	p.Ala463Val	p.A463V	ENST00000407977		463	gCc/gTc																																																																															
BTK	695	MSKCC	GRCh37	X	100611784	100611784	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	544	283	0	ENST00000308731.7:c.1337C>A	p.Ala446Asp	p.A446D	ENST00000308731	NM_000061.2	446	gCc/gAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144134	11144141	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAGCCA	TCCAGCCA	-			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	586	506	0	ENST00000344626.4:c.3716_3723del	p.Ser1239Ter	p.S1239*	ENST00000344626	NM_003072.3	1239	TCCAGCCAt/t																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99478132	99478132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	336	635	0	ENST00000268035.6:c.3036G>A	p.Met1012Ile	p.M1012I	ENST00000268035	NM_000875.3	1012	atG/atA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	36	464	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1300	35	731	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439258	52439528	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGGCTGTGGGATGGGGCTTGTGCGCATGAACCAGCCGCCTCCTCTGCACCATCTGAGACAGGGCAAGAACACAGGCAGGACCTCCAGTAGGATCTCCAAGAAAAGCTCACAGTCTCCCCGGCCCTGTGAACCAGCACTTCCCAGAGAAGAACAGCCCAGCCAGCTGGTGCAATGGGAGTCAGCAAGCTCTAAGTCATGATCCCGCAATGAGACAGGGCAAAGAATGAGATGGGAAAAAAGAAGCAGGAAGAAAAAAAAAAAAAAAAAAAA	AGGGCTGTGGGATGGGGCTTGTGCGCATGAACCAGCCGCCTCCTCTGCACCATCTGAGACAGGGCAAGAACACAGGCAGGACCTCCAGTAGGATCTCCAAGAAAAGCTCACAGTCTCCCCGGCCCTGTGAACCAGCACTTCCCAGAGAAGAACAGCCCAGCCAGCTGGTGCAATGGGAGTCAGCAAGCTCTAAGTCATGATCCCGCAATGAGACAGGGCAAAGAATGAGATGGGAAAAAAGAAGCAGGAAGAAAAAAAAAAAAAAAAAAAA	-			P-0012648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	75	595	0	ENST00000460680.1:c.932-218_984del		p.X311_splice	ENST00000460680	NM_004656.3	311																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0012651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1410	55	454	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	28	389	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0012658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	39	337	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	827	324	1	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111907677	111907677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1763	120	420	0	ENST00000393256.3:c.451G>C	p.Glu151Gln	p.E151Q	ENST00000393256	NM_006538.4	151	Gag/Cag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066675	94066675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	593	467	2	ENST00000369303.4:c.1084G>A	p.Asp362Asn	p.D362N	ENST00000369303	NM_004440.3	362	Gat/Aat																																																																															
NF1	4763	MSKCC	GRCh37	17	29556367	29556367	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	103	327	0	ENST00000358273.4:c.2734C>T	p.Gln912Ter	p.Q912*	ENST00000358273	NM_001042492.2	912	Caa/Taa																																																																															
POLE	5426	MSKCC	GRCh37	12	133212495	133212495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	290	337	0	ENST00000320574.5:c.5794C>T	p.Arg1932Cys	p.R1932C	ENST00000320574	NM_006231.2	1932	Cgt/Tgt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193107231	193107231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	315	300	0	ENST00000367435.3:c.440G>A	p.Arg147His	p.R147H	ENST00000367435	NM_024529.4	147	cGc/cAc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096669	178096669	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	272	215	0	ENST00000397062.3:c.662C>G	p.Thr221Arg	p.T221R	ENST00000397062	NM_006164.4	221	aCa/aGa																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182683369	182683369	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1480	242	255	0	ENST00000292782.4:c.176C>A	p.Ser59Ter	p.S59*	ENST00000292782	NM_020640.2	59	tCa/tAa																																																																															
NBN	4683	MSKCC	GRCh37	8	90947833	90947833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	79	222	0	ENST00000265433.3:c.2242C>T	p.Pro748Ser	p.P748S	ENST00000265433	NM_002485.4	748	Cct/Tct																																																																															
SYK	6850	MSKCC	GRCh37	9	93606256	93606256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1287	107	340	0	ENST00000375746.1:c.76G>A	p.Glu26Lys	p.E26K	ENST00000375746	NM_001174167.1	26	Gaa/Aaa																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139566734	139566734	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	989	367	0	ENST00000308874.7:c.818C>G	p.Ser273Trp	p.S273W	ENST00000308874		273	tCg/tGg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998327	100998327	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	60	50	0	ENST00000325455.5:c.1475G>C	p.Arg492Pro	p.R492P	ENST00000325455	NM_001202474.3	492	cGg/cCg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435230	18435230	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1200	90	307	0	ENST00000266497.5:c.215A>G	p.Asp72Gly	p.D72G	ENST00000266497		72	gAc/gGc																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68353780	68353780	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	54	246	0	ENST00000487270.1:c.615A>T	p.Lys205Asn	p.K205N	ENST00000487270	NM_133509.3	205	aaA/aaT																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576129	88576129	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	407	389	0	ENST00000360948.2:c.1544A>G	p.Gln515Arg	p.Q515R	ENST00000360948	NM_001012338.2	515	cAg/cGg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858445	9858445	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	719	384	0	ENST00000330684.3:c.2956C>G	p.Leu986Val	p.L986V	ENST00000330684	NM_001134407.1	986	Ctt/Gtt																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14022015	14022015	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	306	320	0	ENST00000311895.7:c.715G>C	p.Glu239Gln	p.E239Q	ENST00000311895	NM_005236.2	239	Gaa/Caa																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14024566	14024566	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	74	249	0	ENST00000311895.7:c.793-1G>C		p.X265_splice	ENST00000311895	NM_005236.2	265																																																																																
NUP93	9688	MSKCC	GRCh37	16	56875616	56875616	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	271	302	0	ENST00000308159.5:c.2221-1G>T		p.X741_splice	ENST00000308159	NM_014669.4	741																																																																																
NF1	4763	MSKCC	GRCh37	17	29559864	29559864	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	339	229	0	ENST00000358273.4:c.3461A>T	p.Asn1154Ile	p.N1154I	ENST00000358273	NM_001042492.2	1154	aAt/aTt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56376723	56376723	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2362	396	456	0	ENST00000348428.3:c.763A>G	p.Ile255Val	p.I255V	ENST00000348428	NM_006785.3	255	Att/Gtt																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627706	14627706	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1377	139	498	0	ENST00000254322.2:c.364G>T	p.Glu122Ter	p.E122*	ENST00000254322	NM_006145.1	122	Gag/Tag																																																																															
EP300	2033	MSKCC	GRCh37	22	41513245	41513245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	410	344	0	ENST00000263253.7:c.149C>T	p.Ser50Phe	p.S50F	ENST00000263253	NM_001429.3	50	tCt/tTt																																																																															
RB1	5925	MSKCC	GRCh37	13	48951082	48951086	+	frameshift_variant	Frame_Shift_Del	DEL	TACTG	TACTG	A			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	400	209	0	ENST00000267163.4:c.1244_1248delinsA	p.Ile415LysfsTer4	p.I415Kfs*4	ENST00000267163	NM_000321.2	415	aTACTG/aA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0012688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	218	671	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0012688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	106	952	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	75	828	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604655	48604655	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28936392		P-0012688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	58	625	0	ENST00000342988.3:c.1477G>C	p.Asp493His	p.D493H	ENST00000342988	NM_005359.5	493	Gat/Cat																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871602	35871602	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs116801398		P-0012688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	83	810	1	ENST00000216797.5:c.904G>A	p.Glu302Lys	p.E302K	ENST00000216797	NM_020529.2	302	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0012722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	217	504	1	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0012722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	81	291	1	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603044	48603044	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	42	257	0	ENST00000342988.3:c.1345C>T	p.Gln449Ter	p.Q449*	ENST00000342988	NM_005359.5	449	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112176030	112176030	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	123	366	0	ENST00000257430.4:c.4741delT	p.Ser1581LeufsTer69	p.S1581Lfs*69	ENST00000257430	NM_000038.5	1580	aTt/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	86	569	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SMO	6608	MSKCC	GRCh37	7	128850861	128850861	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	142	726	0	ENST00000249373.3:c.1708G>T	p.Ala570Ser	p.A570S	ENST00000249373	NM_005631.4	570	Gcc/Tcc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048182	180048182	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	83	683	0	ENST00000261937.6:c.2091G>C	p.Met697Ile	p.M697I	ENST00000261937	NM_182925.4	697	atG/atC																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271224	26271224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1293	168	1198	1	ENST00000305910.3:c.389G>A	p.Arg130His	p.R130H	ENST00000305910	NM_003534.2	130	cGc/cAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106523505	106523505	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	75	378	0	ENST00000359195.3:c.2657C>G	p.Thr886Arg	p.T886R	ENST00000359195	NM_002649.2	886	aCg/aGg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561555	9561555	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	27	375	0	ENST00000353224.5:c.227C>A	p.Pro76His	p.P76H	ENST00000353224	NM_177990.2	76	cCc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579394	7579394	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	96	653	0	ENST00000269305.4:c.293del	p.Pro98LeufsTer25	p.P98Lfs*25	ENST00000269305	NM_001126112.2	98	cCt/ct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	50	628	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0012735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	45	784	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0012742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	270	549	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0012742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	221	459	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	104	291	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																															
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0012742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	150	330	0	ENST00000257430.4:c.4128T>A	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	207	361	0	ENST00000342988.3:c.1255G>T	p.Gly419Trp	p.G419W	ENST00000342988	NM_005359.5	419	Ggg/Tgg																																																																															
KDR	3791	MSKCC	GRCh37	4	55991403	55991403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	155	601	0	ENST00000263923.4:c.58G>A	p.Ala20Thr	p.A20T	ENST00000263923	NM_002253.2	20	Gcc/Acc																																																																															
MLL2	8085	MSKCC	GRCh37	12	49445899	49445899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	202	838	0	ENST00000301067.7:c.1567C>T	p.Pro523Ser	p.P523S	ENST00000301067	NM_003482.3	523	Ccg/Tcg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41247905	41247905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	151	613	0	ENST00000357654.3:c.628C>G	p.Gln210Glu	p.Q210E	ENST00000357654	NM_007294.3	210	Caa/Gaa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027875	48027875	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	417	515	0	ENST00000234420.5:c.2753A>C	p.His918Pro	p.H918P	ENST00000234420	NM_000179.2	918	cAt/cCt																																																																															
PMS1	5378	MSKCC	GRCh37	2	190718999	190718999	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	65	295	0	ENST00000441310.2:c.1001C>A	p.Thr334Lys	p.T334K	ENST00000441310	NM_000534.4	334	aCg/aAg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125490	47125490	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	62	728	0	ENST00000409792.3:c.5780A>T	p.Gln1927Leu	p.Q1927L	ENST00000409792	NM_014159.6	1927	cAg/cTg																																																																															
MLL3	58508	MSKCC	GRCh37	7	151879322	151879322	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	240	352	0	ENST00000262189.6:c.5623C>T	p.Gln1875Ter	p.Q1875*	ENST00000262189	NM_170606.2	1875	Cag/Tag																																																																															
WT1	7490	MSKCC	GRCh37	11	32456738	32456738	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	65	214	0	ENST00000332351.3:c.154C>G	p.Arg52Gly	p.R52G	ENST00000332351	NM_024426.4	52	Cgt/Ggt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515220	103515220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	75	606	0	ENST00000355739.4:c.1721C>T	p.Ala574Val	p.A574V	ENST00000355739	NM_000123.3	574	gCt/gTt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1632406	1632406	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0012785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	66	556	0	ENST00000344749.5:c.146-2A>C		p.X49_splice	ENST00000344749	NM_001136139.2	49																																																																																
TP53	7157	MSKCC	GRCh37	17	7572934	7572935	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0012785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	381	758	0	ENST00000269305.4:c.1174_1175del	p.Ser392ArgfsTer78	p.S392Rfs*78	ENST00000269305	NM_001126112.2	392	TCa/a																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0012792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	127	522	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057697	27057697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1303	85	1009	0	ENST00000324856.7:c.1405C>A	p.Pro469Thr	p.P469T	ENST00000324856	NM_006015.4	469	Cca/Aca																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851810	134851810	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	40	583	0	ENST00000398015.3:c.1216A>C	p.Ile406Leu	p.I406L	ENST00000398015	NM_004441.4	406	Atc/Ctc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313421	30313421	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1050	96	747	0	ENST00000262643.3:c.1021A>T	p.Thr341Ser	p.T341S	ENST00000262643	NM_001238.2	341	Acg/Tcg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	30	283	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	266	733	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679835	88679835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	78	433	0	ENST00000360948.2:c.628C>A	p.Pro210Thr	p.P210T	ENST00000360948	NM_001012338.2	210	Cct/Act																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123504162	123504162	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	140	473	0	ENST00000371139.4:c.338G>T	p.Gly113Val	p.G113V	ENST00000371139	NM_001114937.2	113	gGt/gTt																																																																															
ATR	545	MSKCC	GRCh37	3	142176503	142176505	+	inframe_deletion	In_Frame_Del	DEL	CGA	CGA	-			P-0012803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	166	648	0	ENST00000350721.4:c.7596_7598del	p.Phe2532_Arg2533delinsLeu	p.F2532_R2533delinsL	ENST00000350721	NM_001184.3	2532	ttTCGa/tta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0012823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	260	483	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
AXL	558	MSKCC	GRCh37	19	41743932	41743933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778012871		P-0012823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	172	712	1	ENST00000301178.4:c.874dup	p.His292ProfsTer47	p.H292Pfs*47	ENST00000301178	NM_021913.4	289	-/C																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	274	487	1	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0012823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	142	407	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
AR	367	MSKCC	GRCh37	X	66766357	66766389	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	-			P-0012823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	50	48	0	ENST00000374690.3:c.1388_1420delGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG	p.Gly463_Gly473del	p.G463_G473del	ENST00000374690	NM_000044.3	457	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC/-																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	330	562	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176133025	176133025	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0012823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	258	411	0	ENST00000367669.3:c.568A>G	p.Asn190Asp	p.N190D	ENST00000367669	NM_022457.5	190	Aat/Gat																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961423	54961423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	24	187	0	ENST00000312783.6:c.209C>T	p.Pro70Leu	p.P70L	ENST00000312783	NM_198436.1	70	cCg/cTg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			14	241	434	1	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683785	162683785	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			55	16	377	0	ENST00000366898.1:c.184G>C	p.Asp62His	p.D62H	ENST00000366898	NM_004562.2	62	Gat/Cat																																																																															
KDR	3791	MSKCC	GRCh37	4	55960993	55960993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	56	451	0	ENST00000263923.4:c.2947C>T	p.Leu983Phe	p.L983F	ENST00000263923	NM_002253.2	983	Ctc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			12	444	506	1	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106161	27106161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	201	425	0	ENST00000324856.7:c.5772G>T	p.Glu1924Asp	p.E1924D	ENST00000324856	NM_006015.4	1924	gaG/gaT																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794487	242794487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			12	146	365	0	ENST00000334409.5:c.455C>A	p.Pro152His	p.P152H	ENST00000334409	NM_005018.2	152	cCc/cAc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026096	71026096	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	58	419	0	ENST00000318789.4:c.1526G>T	p.Trp509Leu	p.W509L	ENST00000318789	NM_032682.5	509	tGg/tTg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55140727	55140727	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	110	507	0	ENST00000257290.5:c.1588G>T	p.Ala530Ser	p.A530S	ENST00000257290	NM_006206.4	530	Gca/Tca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187516919	187516919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			12	115	508	1	ENST00000441802.2:c.13062G>T	p.Gln4354His	p.Q4354H	ENST00000441802	NM_005245.3	4354	caG/caT																																																																															
SMO	6608	MSKCC	GRCh37	7	128850945	128850945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	59	312	0	ENST00000249373.3:c.1792G>A	p.Gly598Arg	p.G598R	ENST00000249373	NM_005631.4	598	Ggg/Agg																																																																															
MLL3	58508	MSKCC	GRCh37	7	151873966	151873966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	41	527	0	ENST00000262189.6:c.8572G>A	p.Ala2858Thr	p.A2858T	ENST00000262189	NM_170606.2	2858	Gct/Act																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097679	8097679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	30	417	0	ENST00000346208.3:c.61G>A	p.Gly21Arg	p.G21R	ENST00000346208		21	Ggg/Agg																																																																															
RET	5979	MSKCC	GRCh37	10	43615015	43615015	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	35	482	1	ENST00000355710.3:c.2429G>T	p.Gly810Val	p.G810V	ENST00000355710	NM_020975.4	810	gGc/gTc																																																																															
WT1	7490	MSKCC	GRCh37	11	32421519	32421519	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			41	39	389	2	ENST00000332351.3:c.1073C>A	p.Thr358Lys	p.T358K	ENST00000332351	NM_024426.4	358	aCg/aAg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56486539	56486539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	157	515	0	ENST00000267101.3:c.1118G>T	p.Trp373Leu	p.W373L	ENST00000267101	NM_001982.3	373	tGg/tTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133256177	133256177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	107	507	0	ENST00000320574.5:c.484G>T	p.Asp162Tyr	p.D162Y	ENST00000320574	NM_006231.2	162	Gat/Tat																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872356	35872356	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	144	639	0	ENST00000216797.5:c.547G>T	p.Gly183Cys	p.G183C	ENST00000216797	NM_020529.2	183	Ggc/Tgc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483854	88483854	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			33	20	422	0	ENST00000360948.2:c.1716G>T	p.Lys572Asn	p.K572N	ENST00000360948	NM_001012338.2	572	aaG/aaT																																																																															
AXL	558	MSKCC	GRCh37	19	41744382	41744382	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	130	651	0	ENST00000301178.4:c.1004del	p.Gly335AlafsTer31	p.G335Afs*31	ENST00000301178	NM_021913.4	334	ctG/ct																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416650	121416652	+	missense_variant	Missense_Mutation	ONP	ATC	ATC	CTG			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	56	495	0	ENST00000257555.6:c.79_81delinsCTG	p.Ile27Leu	p.I27L	ENST00000257555		27	ATC/CTG																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2207631	2207631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	46	968	0	ENST00000398665.3:c.915G>T	p.Trp305Cys	p.W305C	ENST00000398665	NM_032482.2	305	tgG/tgT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	37	585	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0012846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	48	671	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
NF2	4771	MSKCC	GRCh37	22	30069291	30069291	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	35	564	0	ENST00000338641.4:c.1156G>T	p.Glu386Ter	p.E386*	ENST00000338641	NM_000268.3	386	Gaa/Taa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521754	89521754	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	32	401	0	ENST00000336596.2:c.2831C>A	p.Ala944Asp	p.A944D	ENST00000336596	NM_005233.5	944	gCc/gAc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729258	41729258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	50	1029	0	ENST00000242208.4:c.1271G>T	p.Gly424Val	p.G424V	ENST00000242208	NM_002192.2	424	gGg/gTg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827991	40827991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	54	512	0	ENST00000373198.4:c.2437G>T	p.Ala813Ser	p.A813S	ENST00000373198	NM_133170.3	813	Gcc/Tcc																																																																															
NF2	4771	MSKCC	GRCh37	22	30069459	30069459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	31	436	0	ENST00000338641.4:c.1324G>A	p.Glu442Lys	p.E442K	ENST00000338641	NM_000268.3	442	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	190	655	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																															
CENPA	1058	MSKCC	GRCh37	2	27016048	27016048	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	212	1156	1	ENST00000335756.4:c.324C>A	p.Asp108Glu	p.D108E	ENST00000335756	NM_001809.3	108	gaC/gaA																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143033714	143033714	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1276	78	781	1	ENST00000262992.4:c.2257C>T	p.Gln753Ter	p.Q753*	ENST00000262992	NM_001101669.1	753	Cag/Tag																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31380516	31380516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	68	826	1	ENST00000328111.2:c.1006G>A	p.Ala336Thr	p.A336T	ENST00000328111	NM_006892.3	336	Gcc/Acc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101172	41101172	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	26	323	0	ENST00000373198.4:c.1184T>A	p.Ile395Asn	p.I395N	ENST00000373198	NM_133170.3	395	aTc/aAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880997	37880998	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TTT			P-0012866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	337	768	1	ENST00000269571.5:c.2326_2327insTTT	p.Gly776delinsValCys	p.G776delinsVC	ENST00000269571		776	ggt/gTTTgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0012920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	188	716	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
BRAF	673	MSKCC	GRCh37	7	140477837	140477851	+	inframe_deletion	In_Frame_Del	DEL	TAGGTGCTGTCACAT	TAGGTGCTGTCACAT	-			P-0012920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	159	716	0	ENST00000288602.6:c.1457_1471del	p.Asn486_Pro490del	p.N486_P490del	ENST00000288602	NM_004333.4	486	aATGTGACAGCACCTAca/aca																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178669	32178669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	69	676	0	ENST00000375023.3:c.2725G>A	p.Asp909Asn	p.D909N	ENST00000375023	NM_004557.3	909	Gac/Aac																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427465	427465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	97	682	3	ENST00000399788.2:c.2704C>T	p.Arg902Trp	p.R902W	ENST00000399788	NM_001042603.1	902	Cgg/Tgg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858477	57858477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	136	942	0	ENST00000228682.2:c.215G>A	p.Arg72Gln	p.R72Q	ENST00000228682	NM_005269.2	72	cGg/cAg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271828	15271828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	43	349	1	ENST00000263388.2:c.6611C>T	p.Pro2204Leu	p.P2204L	ENST00000263388	NM_000435.2	2204	cCg/cTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245152	53245152	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	47	744	2	ENST00000375401.3:c.788A>G	p.Glu263Gly	p.E263G	ENST00000375401	NM_004187.3	263	gAg/gGg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37657640	37657656	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAATTTCCTGCATCG	AAGAATTTCCTGCATCG	-			P-0012930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	170	441	0	ENST00000447079.4:c.2557_2573del	p.Lys853GlyfsTer3	p.K853Gfs*3	ENST00000447079	NM_015083.1	853	AAGAATTTCCTGCATCGg/g																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662140	227662140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	466	326	0	ENST00000305123.5:c.1315C>T	p.Arg439Trp	p.R439W	ENST00000305123	NM_005544.2	439	Cgg/Tgg																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195461	102195461	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	355	553	0	ENST00000263464.3:c.221A>T	p.Asp74Val	p.D74V	ENST00000263464	NM_001165.4	74	gAt/gTt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2126074	2126081	+	frameshift_variant	Frame_Shift_Del	DEL	ATCAGTAC	ATCAGTAC	-			P-0012973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	258	512	0	ENST00000219476.3:c.2648_2655del	p.Gln883ArgfsTer29	p.Q883Rfs*29	ENST00000219476	NM_000548.3	882	aATCAGTAC/a																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119906	70119907	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	63	334	0	ENST00000245479.2:c.911dup	p.Val306GlyfsTer272	p.V306Gfs*272	ENST00000245479	NM_000346.3	303	cac/caCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	168	463	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221995	1221995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	206	557	0	ENST00000326873.7:c.910C>T	p.Arg304Trp	p.R304W	ENST00000326873	NM_000455.4	304	Cgg/Tgg																																																																															
STK40	83931	MSKCC	GRCh37	1	36809831	36809831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	134	511	0	ENST00000373129.3:c.774G>T	p.Trp258Cys	p.W258C	ENST00000373129	NM_032017.1	258	tgG/tgT																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120493352	120493352	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1229	76	677	0	ENST00000256646.2:c.2474A>G	p.Tyr825Cys	p.Y825C	ENST00000256646	NM_024408.3	825	tAc/tGc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193121538	193121538	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	128	599	1	ENST00000367435.3:c.936G>T	p.Met312Ile	p.M312I	ENST00000367435	NM_024529.4	312	atG/atT																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643813	52643813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	54	507	0	ENST00000394830.3:c.2083G>A	p.Asp695Asn	p.D695N	ENST00000394830	NM_018313.4	695	Gac/Aac																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430230	181430230	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	42	386	2	ENST00000325404.1:c.82G>T	p.Ala28Ser	p.A28S	ENST00000325404	NM_003106.3	28	Gcg/Tcg																																																																															
APC	324	MSKCC	GRCh37	5	112162804	112162804	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	52	329	0	ENST00000257430.4:c.1409-1G>T		p.X470_splice	ENST00000257430	NM_000038.5	470																																																																																
CARD11	84433	MSKCC	GRCh37	7	2983911	2983911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1195	134	868	3	ENST00000396946.4:c.619C>A	p.Arg207Ser	p.R207S	ENST00000396946	NM_032415.4	207	Cgc/Agc																																																																															
HGF	3082	MSKCC	GRCh37	7	81335639	81335639	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	108	555	1	ENST00000222390.5:c.1721C>A	p.Pro574His	p.P574H	ENST00000222390	NM_000601.4	574	cCt/cAt																																																																															
MET	4233	MSKCC	GRCh37	7	116422067	116422067	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	44	419	1	ENST00000397752.3:c.3548G>T	p.Gly1183Val	p.G1183V	ENST00000397752	NM_000245.2	1183	gGc/gTc																																																																															
MLL2	8085	MSKCC	GRCh37	12	49438686	49438686	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	162	577	0	ENST00000301067.7:c.4804A>T	p.Asn1602Tyr	p.N1602Y	ENST00000301067	NM_003482.3	1602	Aac/Tac																																																																															
FLT3	2322	MSKCC	GRCh37	13	28622440	28622440	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	36	487	2	ENST00000241453.7:c.1177G>T	p.Glu393Ter	p.E393*	ENST00000241453	NM_004119.2	393	Gag/Tag																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609994	81609994	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	129	329	0	ENST00000298171.2:c.1592G>T	p.Arg531Leu	p.R531L	ENST00000298171	NM_000369.2	531	cGg/cTg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37649083	37649083	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	58	475	0	ENST00000447079.4:c.2188A>T	p.Ile730Phe	p.I730F	ENST00000447079	NM_015083.1	730	Att/Ttt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602443	10602443	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	197	549	1	ENST00000171111.5:c.1135G>T	p.Gly379Cys	p.G379C	ENST00000171111	NM_203500.1	379	Ggc/Tgc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546724	9546724	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	77	403	0	ENST00000353224.5:c.1298G>C	p.Arg433Pro	p.R433P	ENST00000353224	NM_177990.2	433	cGg/cCg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100972	41100972	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	151	471	1	ENST00000373198.4:c.1384C>A	p.Leu462Ile	p.L462I	ENST00000373198	NM_133170.3	462	Ctc/Atc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41101151	41101151	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	93	304	0	ENST00000373198.4:c.1205A>T	p.Gln402Leu	p.Q402L	ENST00000373198	NM_133170.3	402	cAg/cTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53225932	53225932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	183	805	2	ENST00000375401.3:c.2917C>A	p.Leu973Met	p.L973M	ENST00000375401	NM_004187.3	973	Ctg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577083	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0013011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1002	81	653	0	ENST00000269305.4:c.855_856delinsTT	p.Glu285_Glu286delinsAspTer	p.E285_E286delinsD*	ENST00000269305	NM_001126112.2	285	gaGGaa/gaTTaa																																																																															
MGA	23269	MSKCC	GRCh37	15	42003149	42003151	+	frameshift_variant	Frame_Shift_Del	DEL	CGA	CGA	T			P-0013011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	250	1215	0	ENST00000219905.7:c.2686_2688delinsT	p.Arg896Ter	p.R896*	ENST00000219905	NM_001164273.1	896	CGA/T																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0013041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	50	340	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	16	406	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
ATM	472	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0013041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	94	390	1	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0013041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	143	595	0	ENST00000346208.3:c.1002_1003dup	p.Asp335GlyfsTer21	p.D335Gfs*21	ENST00000346208		333	-/GG																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261523	16261523	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0013041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	91	404	0	ENST00000375759.3:c.8788A>T	p.Lys2930Ter	p.K2930*	ENST00000375759	NM_015001.2	2930	Aag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	52	457	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	52	257	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839712	27839712	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1934	176	1770	0	ENST00000328488.2:c.382G>C	p.Ala128Pro	p.A128P	ENST00000328488	NM_003533.2	128	Gcg/Ccg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117953	70117953	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	27	264	0	ENST00000245479.2:c.421A>G	p.Lys141Glu	p.K141E	ENST00000245479	NM_000346.3	141	Aag/Gag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10292722	10292722	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	48	463	0	ENST00000340748.4:c.112G>T	p.Glu38Ter	p.E38*	ENST00000340748		38	Gaa/Taa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045500	47045500	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	55	291	0	ENST00000329236.7:c.2233G>T	p.Glu745Ter	p.E745*	ENST00000329236	NM_001204466.1	745	Gaa/Taa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117710	70117711	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	151	894	0	ENST00000245479.2:c.179dup	p.Lys61GlufsTer191	p.K61Efs*191	ENST00000245479	NM_000346.3	60	ctg/cTtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	311	446	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	323	511	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
CDH1	999	MSKCC	GRCh37	16	68856020	68856020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	463	912	0	ENST00000261769.5:c.1828C>T	p.Gln610Ter	p.Q610*	ENST00000261769	NM_004360.3	610	Cag/Tag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968871	15968871	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	466	674	0	ENST00000268712.3:c.4879T>G	p.Leu1627Val	p.L1627V	ENST00000268712	NM_006311.3	1627	Ttg/Gtg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654718	67654718	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	338	630	0	ENST00000264010.4:c.1205C>T	p.Ser402Leu	p.S402L	ENST00000264010	NM_006565.3	402	tCa/tTa																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726512	46726512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	334	537	1	ENST00000371975.4:c.591G>A	p.Met197Ile	p.M197I	ENST00000371975	NM_003579.3	197	atG/atA																																																																															
JAK1	3716	MSKCC	GRCh37	1	65309819	65309819	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	349	670	0	ENST00000342505.4:c.2331G>A	p.Trp777Ter	p.W777*	ENST00000342505	NM_002227.2	777	tgG/tgA																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72076716	72076716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	444	860	0	ENST00000357731.5:c.781G>A	p.Glu261Lys	p.E261K	ENST00000357731	NM_173808.2	261	Gag/Aag																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439909	52439909	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	270	480	0	ENST00000460680.1:c.803C>G	p.Pro268Arg	p.P268R	ENST00000460680	NM_004656.3	268	cCa/cGa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518175	8518175	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1354824749		P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	299	611	1	ENST00000356435.5:c.1216G>A	p.Glu406Lys	p.E406K	ENST00000356435		406	Gaa/Aaa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914820	32914820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1489	630	1100	2	ENST00000380152.3:c.6328G>A	p.Asp2110Asn	p.D2110N	ENST00000380152		2110	Gat/Aat																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968909	15968909	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	620	697	0	ENST00000268712.3:c.4841T>G	p.Leu1614Ter	p.L1614*	ENST00000268712	NM_006311.3	1614	tTa/tGa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968933	15968933	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	626	712	0	ENST00000268712.3:c.4817T>C	p.Met1606Thr	p.M1606T	ENST00000268712	NM_006311.3	1606	aTg/aCg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968940	15968940	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	621	724	0	ENST00000268712.3:c.4810T>A	p.Tyr1604Asn	p.Y1604N	ENST00000268712	NM_006311.3	1604	Tac/Aac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0013115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	154	284	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0013115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	189	508	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0013115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	243	774	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
ALK	238	MSKCC	GRCh37	2	29456563	29456563	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0013115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	213	629	0	ENST00000389048.3:c.2356-1G>A		p.X786_splice	ENST00000389048	NM_004304.4	786																																																																																
CASP8	841	MSKCC	GRCh37	2	202151293	202151293	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	316	930	0	ENST00000358485.4:c.1593A>C	p.Lys531Asn	p.K531N	ENST00000358485	NM_001080125.1	531	aaA/aaC																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112430	115112431	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	211	549	0	ENST00000257566.3:c.1309dup	p.His437ProfsTer2	p.H437Pfs*2	ENST00000257566	NM_016569.3	437	cat/cCat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0013141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	135	572	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120642	115120642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	198	853	0	ENST00000257566.3:c.364G>A	p.Glu122Lys	p.E122K	ENST00000257566	NM_016569.3	122	Gag/Aag																																																																															
CBFB	865	MSKCC	GRCh37	16	67063311	67063311	+	start_lost	Translation_Start_Site	SNP	A	A	T			P-0013141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	78	287	0	ENST00000412916.2:c.1A>T	p.Met1?	p.M1?	ENST00000412916		1	Atg/Ttg																																																																															
CDH1	999	MSKCC	GRCh37	16	68845616	68845616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	143	568	0	ENST00000261769.5:c.862G>A	p.Asp288Asn	p.D288N	ENST00000261769	NM_004360.3	288	Gac/Aac																																																																															
TSC2	7249	MSKCC	GRCh37	16	2104393	2104393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	345	612	0	ENST00000219476.3:c.433G>A	p.Ala145Thr	p.A145T	ENST00000219476	NM_000548.3	145	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378590	25378590	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	320	461	0	ENST00000256078.4:c.408T>A	p.Ser136Arg	p.S136R	ENST00000256078	NM_033360.2	136	agT/agA																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366252	15366252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	40	828	0	ENST00000263377.2:c.1903C>T	p.His635Tyr	p.H635Y	ENST00000263377	NM_058243.2	635	Cac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	232	632	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MLL3	58508	MSKCC	GRCh37	7	151845622	151845623	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	252	675	0	ENST00000262189.6:c.13389dup	p.Phe4464LeufsTer9	p.F4464Lfs*9	ENST00000262189	NM_170606.2	4463	-/C																																																																															
TP53	7157	MSKCC	GRCh37	17	7577054	7577055	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0013222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	414	809	0	ENST00000269305.4:c.883_884delinsG	p.Pro295ValfsTer50	p.P295Vfs*50	ENST00000269305	NM_001126112.2	295	CCt/Gt																																																																															
NF1	4763	MSKCC	GRCh37	17	29486049	29486050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	184	341	0	ENST00000358273.4:c.233dup	p.Asn78LysfsTer29	p.N78Kfs*29	ENST00000358273	NM_001042492.2	76	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579409	7579410	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0013242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	296	539	0	ENST00000269305.4:c.277_278delCT	p.Leu93ValfsTer55	p.L93Vfs*55	ENST00000269305	NM_001126112.2	93	CTg/g																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692839	89692967	+	inframe_deletion	In_Frame_Del	DEL	TTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGAACTGGTGTAATGATATGTGCATATTTATTACATCGGGGCAAATTTTTAAAGGCACAAGAGG	TTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGAACTGGTGTAATGATATGTGCATATTTATTACATCGGGGCAAATTTTTAAAGGCACAAGAGG	-			P-0013242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			122	118	164	0	ENST00000371953.3:c.323_451del	p.Leu108_Ala151delinsPro	p.L108_A151delinsP	ENST00000371953	NM_000314.4	108	cTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGAACTGGTGTAATGATATGTGCATATTTATTACATCGGGGCAAATTTTTAAAGGCACAAGAGGcc/ccc																																																																															
MLL3	58508	MSKCC	GRCh37	7	151842313	151842313	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	296	621	0	ENST00000262189.6:c.14099del	p.Pro4700LeufsTer16	p.P4700Lfs*16	ENST00000262189	NM_170606.2	4700	cCt/ct																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780205	9780205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	588	806	1	ENST00000377346.4:c.1375G>A	p.Val459Met	p.V459M	ENST00000377346	NM_005026.3	459	Gtg/Atg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846327	156846327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	148	760	0	ENST00000524377.1:c.1768G>A	p.Glu590Lys	p.E590K	ENST00000524377	NM_002529.3	590	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1294318	1294318	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	88	179	1	ENST00000310581.5:c.683C>A	p.Ala228Asp	p.A228D	ENST00000310581	NM_198253.2	228	gCc/gAc																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519586	137519586	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	315	780	0	ENST00000367739.4:c.1052G>C	p.Ser351Thr	p.S351T	ENST00000367739	NM_000416.2	351	aGt/aCt																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30134514	30134514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	159	322	0	ENST00000263025.4:c.17C>T	p.Ala6Val	p.A6V	ENST00000263025	NM_002746.2	6	gCt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0013262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	422	669	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15971397	15971397	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	476	728	0	ENST00000268712.3:c.4552A>G	p.Lys1518Glu	p.K1518E	ENST00000268712	NM_006311.3	1518	Aaa/Gaa																																																																															
SYK	6850	MSKCC	GRCh37	9	93637011	93637011	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	150	577	0	ENST00000375746.1:c.1061del	p.Asp354AlafsTer17	p.D354Afs*17	ENST00000375746	NM_001174167.1	354	gAc/gc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419975	152419988	+	frameshift_variant	Frame_Shift_Del	DEL	CCGTGGAGGGGCAT	CCGTGGAGGGGCAT	-			P-0013262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	104	648	0	ENST00000206249.3:c.1671_1684del	p.Ala558AspfsTer88	p.A558Dfs*88	ENST00000206249	NM_000125.3	554	agCCGTGGAGGGGCATcc/agcc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227057	53227057	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0013272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	305	640	4	ENST00000375401.3:c.2518C>T	p.Pro840Ser	p.P840S	ENST00000375401	NM_004187.3	840	Ccc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0013272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	370	505	1	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67589599	67589604	+	inframe_deletion	In_Frame_Del	DEL	TCAGTT	TCAGTT	-			P-0013272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	358	359	0	ENST00000274335.5:c.1365_1370del	p.Phe456_Gln457del	p.F456_Q457del	ENST00000274335		454	acTCAGTTt/act																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249359	153249359	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0013272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	368	442	0	ENST00000281708.4:c.1418+1G>T		p.X473_splice	ENST00000281708	NM_033632.3	473																																																																																
MAPK3	5595	MSKCC	GRCh37	16	30134471	30134472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	150	522	0	ENST00000263025.4:c.59dup	p.Gly21ArgfsTer41	p.G21Rfs*41	ENST00000263025	NM_002746.2	20	gtc/gtTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0013310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	366	439	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0013310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	99	504	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0013310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	61	981	2	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974780	21974780	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	57	264	0	ENST00000304494.5:c.47T>A	p.Leu16Gln	p.L16Q	ENST00000304494	NM_000077.4	16	cTg/cAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748583	40748583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	35	449	0	ENST00000373198.4:c.2933C>T	p.Ala978Val	p.A978V	ENST00000373198	NM_133170.3	978	gCg/gTg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577330	64577333	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0013399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	220	784	0	ENST00000337652.1:c.249_252delGTCT	p.Ile85SerfsTer33	p.I85Sfs*33	ENST00000337652	NM_130803.2	83	ctGTCT/ct																																																																															
BCL6	604	MSKCC	GRCh37	3	187446884	187446884	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	175	860	0	ENST00000232014.4:c.1309G>T	p.Asp437Tyr	p.D437Y	ENST00000232014	NM_001130845.1	437	Gac/Tac																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652001	36652001	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	272	766	1	ENST00000244741.5:c.123C>A	p.Cys41Ter	p.C41*	ENST00000244741	NM_000389.4	41	tgC/tgA																																																																															
BRAF	673	MSKCC	GRCh37	7	140453139	140453139	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	221	643	1	ENST00000288602.6:c.1796C>A	p.Thr599Lys	p.T599K	ENST00000288602	NM_004333.4	599	aCa/aAa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2113052	2113052	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0013399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	257	996	6	ENST00000219476.3:c.1441G>T	p.Glu481Ter	p.E481*	ENST00000219476	NM_000548.3	481	Gag/Tag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57478626	57478626	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	332	731	2	ENST00000371085.3:c.298A>G	p.Lys100Glu	p.K100E	ENST00000371085	NM_000516.4	100	Aaa/Gaa																																																																															
ATRX	546	MSKCC	GRCh37	X	76939274	76939274	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			39	187	494	0	ENST00000373344.5:c.1474G>T	p.Glu492Ter	p.E492*	ENST00000373344	NM_000489.3	492	Gaa/Taa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	220	662	2	ENST00000349496.5:c.110C>A	p.Ser37Tyr	p.S37Y	ENST00000349496	NM_001904.3	37	tCt/tAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0013401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	690	836	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8633320	8633320	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866980874		P-0013401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	667	853	3	ENST00000356435.5:c.349C>T	p.Arg117Trp	p.R117W	ENST00000356435		117	Cgg/Tgg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745623	162745623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	152	512	0	ENST00000367921.3:c.2038C>T	p.Arg680Cys	p.R680C	ENST00000367921	NM_006182.2	680	Cgc/Tgc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15971252	15971252	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs118021690		P-0013401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	384	472	0	ENST00000268712.3:c.4697C>T	p.Thr1566Met	p.T1566M	ENST00000268712	NM_006311.3	1566	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0013404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	113	595	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121242	29121242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	206	1037	0	ENST00000328354.6:c.433C>T	p.Arg145Trp	p.R145W	ENST00000328354	NM_007194.3	145	Cgg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40911143	40911143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	467	960	1	ENST00000373198.4:c.2162G>A	p.Arg721His	p.R721H	ENST00000373198	NM_133170.3	721	cGt/cAt																																																																															
PMS1	5378	MSKCC	GRCh37	2	190718767	190718767	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	114	533	0	ENST00000441310.2:c.925A>C	p.Asn309His	p.N309H	ENST00000441310	NM_000534.4	309	Aat/Cat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8492979	8492979	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0013404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	30	444	0	ENST00000356435.5:c.2350G>C	p.Asp784His	p.D784H	ENST00000356435		784	Gac/Cac																																																																															
ATM	472	MSKCC	GRCh37	11	108216469	108216469	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0013404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	316	631	0	ENST00000278616.4:c.8419-1G>C		p.X2807_splice	ENST00000278616	NM_000051.3	2807																																																																																
MGA	23269	MSKCC	GRCh37	15	41989116	41989116	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	324	1289	0	ENST00000219905.7:c.1908A>C	p.Leu636Phe	p.L636F	ENST00000219905	NM_001164273.1	636	ttA/ttC																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351594	89351594	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	444	1408	1	ENST00000301030.4:c.1356T>A	p.Asn452Lys	p.N452K	ENST00000301030	NM_001256183.1	452	aaT/aaA																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761012	59761012	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	194	848	2	ENST00000259008.2:c.3395T>C	p.Phe1132Ser	p.F1132S	ENST00000259008	NM_032043.2	1132	tTt/tCt																																																																															
CBFB	865	MSKCC	GRCh37	16	67063347	67063347	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013411-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	74	394	1	ENST00000412916.2:c.37G>T	p.Glu13Ter	p.E13*	ENST00000412916		13	Gag/Tag																																																																															
CDH1	999	MSKCC	GRCh37	16	68847167	68847249	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCTAGCAGTCTTGGTACTTTGTAAATGACACATCTCTTTGCTCTGCAGTACAAGGGTCAGGTGCCTGAGAACGAGGCTAACG	TGCTAGCAGTCTTGGTACTTTGTAAATGACACATCTCTTTGCTCTGCAGTACAAGGGTCAGGTGCCTGAGAACGAGGCTAACG	-			P-0013411-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	114	255	0	ENST00000261769.5:c.1138-48_1172del		p.X380_splice	ENST00000261769	NM_004360.3	380																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44935950	44935951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013411-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	126	642	0	ENST00000377967.4:c.2712dup	p.Lys905Ter	p.K905*	ENST00000377967	NM_021140.2	904	ggt/ggTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0013437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	188	586	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0013437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	398	572	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738300	145738300	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	75	457	0	ENST00000428558.2:c.2685G>T	p.Arg895Ser	p.R895S	ENST00000428558	NM_004260.3	895	agG/agT																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226596	2226596	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	73	499	0	ENST00000398665.3:c.4076A>T	p.Lys1359Met	p.K1359M	ENST00000398665	NM_032482.2	1359	aAg/aTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10251535	10251535	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	79	699	0	ENST00000340748.4:c.3397G>T	p.Glu1133Ter	p.E1133*	ENST00000340748		1133	Gag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47035946	47035946	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	169	502	0	ENST00000329236.7:c.396del	p.Lys133SerfsTer56	p.K133Sfs*56	ENST00000329236	NM_001204466.1	131	gaC/ga																																																																															
RB1	5925	MSKCC	GRCh37	13	48916770	48916770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	124	408	0	ENST00000267163.4:c.301del	p.Ile101SerfsTer10	p.I101Sfs*10	ENST00000267163	NM_000321.2	100	ggA/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	107	643	1	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220622	1220622	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	130	760	2	ENST00000326873.7:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000326873	NM_000455.4	214	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1220400	1220400	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	131	863	0	ENST00000326873.7:c.493G>T	p.Glu165Ter	p.E165*	ENST00000326873	NM_000455.4	165	Gag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89462324	89462324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	121	560	2	ENST00000336596.2:c.1796C>T	p.Pro599Leu	p.P599L	ENST00000336596	NM_005233.5	599	cCa/cTa																																																																															
ATR	545	MSKCC	GRCh37	3	142183956	142183956	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	116	663	0	ENST00000350721.4:c.7024A>T	p.Asn2342Tyr	p.N2342Y	ENST00000350721	NM_001184.3	2342	Aat/Tat																																																																															
FLT4	2324	MSKCC	GRCh37	5	180040095	180040095	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	116	850	0	ENST00000261937.6:c.3347C>G	p.Pro1116Arg	p.P1116R	ENST00000261937	NM_182925.4	1116	cCt/cGt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056426	180056426	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0013460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	67	394	0	ENST00000261937.6:c.818C>A	p.Ala273Glu	p.A273E	ENST00000261937	NM_182925.4	273	gCa/gAa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120863	115120863	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	54	415	0	ENST00000257566.3:c.143C>A	p.Pro48His	p.P48H	ENST00000257566	NM_016569.3	48	cCc/cAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76940083	76940083	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	103	265	0	ENST00000373344.5:c.665G>T	p.Trp222Leu	p.W222L	ENST00000373344	NM_000489.3	222	tGg/tTg																																																																															
BTK	695	MSKCC	GRCh37	X	100615579	100615579	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	181	499	0	ENST00000308731.7:c.753G>A	p.Trp251Ter	p.W251*	ENST00000308731	NM_000061.2	251	tgG/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1210	222	782	1	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0013487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	250	808	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593517	48593517	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	178	505	0	ENST00000342988.3:c.1268G>T	p.Gly423Val	p.G423V	ENST00000342988	NM_005359.5	423	gGa/gTa																																																																															
AXL	558	MSKCC	GRCh37	19	41727941	41727941	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	174	719	0	ENST00000301178.4:c.566A>T	p.Gln189Leu	p.Q189L	ENST00000301178	NM_021913.4	189	cAg/cTg																																																																															
FAM175A	84142	MSKCC	GRCh37	4	84390255	84390287	+	inframe_deletion	In_Frame_Del	DEL	GTTCAGACATGCCCAGATTGGCAACCACTAAAG	GTTCAGACATGCCCAGATTGGCAACCACTAAAG	-			P-0013487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	76	598	0	ENST00000321945.7:c.494_526del	p.Pro165_Glu175del	p.P165_E175del	ENST00000321945	NM_139076.2	165	cCTTTAGTGGTTGCCAATCTGGGCATGTCTGAACaa/caa																																																																															
APC	324	MSKCC	GRCh37	5	112175939	112175939	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	157	447	1	ENST00000257430.4:c.4648G>T	p.Glu1550Ter	p.E1550*	ENST00000257430	NM_000038.5	1550	Gag/Tag																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589623	67589634	+	inframe_deletion	In_Frame_Del	DEL	ATATGATAGATT	ATATGATAGATT	-			P-0013505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	114	353	0	ENST00000274335.5:c.1392_1403delTAGATTATATGA	p.Asp464_Tyr467del	p.D464_Y467del	ENST00000274335		462	gaATATGATAGATTa/gaa																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325803	65325803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	169	490	1	ENST00000342505.4:c.1319G>A	p.Cys440Tyr	p.C440Y	ENST00000342505	NM_002227.2	440	tGt/tAt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267422	198267422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	239	589	0	ENST00000335508.6:c.1935G>T	p.Leu645Phe	p.L645F	ENST00000335508	NM_012433.2	645	ttG/ttT																																																																															
CD276	80381	MSKCC	GRCh37	15	74003488	74003488	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	339	824	1	ENST00000318443.5:c.1559T>C	p.Leu520Pro	p.L520P	ENST00000318443	NM_001024736.1	520	cTg/cCg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271893	18271893	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	177	448	4	ENST00000222254.8:c.496G>T	p.Asp166Tyr	p.D166Y	ENST00000222254	NM_005027.3	166	Gac/Tac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44923064	44923064	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0013505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	156	236	1	ENST00000377967.4:c.1923+2T>A		p.X641_splice	ENST00000377967	NM_021140.2	641																																																																																
TP53	7157	MSKCC	GRCh37	17	7578249	7578444	+	splice_acceptor_variant,splice_donor_variant,frameshift_variant,stop_lost,intron_variant	Splice_Site	DEL	ATTTCCTTCCACTCGGATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAG	ATTTCCTTCCACTCGGATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAG	-			P-0013505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	273	701	0	ENST00000269305.4:c.486_600del		p.X162_splice	ENST00000269305	NM_001126112.2	162	atCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGATGGTGAGCAGCTGGGGCTGGAGAGACGACAGGGCTGGTTGCCCAGGGTCCCCAGGCCTCTGATTCCTCACTGATTGCTCTTAGGTCTGGCCCCTCCTCAGCATCTTATCCGAGTGGAAGGAAAT/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	89	546	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916947	178916947	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	89	807	0	ENST00000263967.3:c.334A>T	p.Ile112Phe	p.I112F	ENST00000263967	NM_006218.2	112	Atc/Ttc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857895	9857895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	128	635	0	ENST00000330684.3:c.3506G>A	p.Arg1169Gln	p.R1169Q	ENST00000330684	NM_001134407.1	1169	cGg/cAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520017		P-0013511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	147	584	0	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519676	176519676	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	81	453	2	ENST00000292408.4:c.948G>T	p.Glu316Asp	p.E316D	ENST00000292408	NM_213647.1	316	gaG/gaT																																																																															
HGF	3082	MSKCC	GRCh37	7	81381533	81381533	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	116	718	0	ENST00000222390.5:c.528C>A	p.Tyr176Ter	p.Y176*	ENST00000222390	NM_000601.4	176	taC/taA																																																																															
ATM	472	MSKCC	GRCh37	11	108202233	108202233	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	73	462	0	ENST00000278616.4:c.7578A>C	p.Arg2526Ser	p.R2526S	ENST00000278616	NM_000051.3	2526	agA/agC																																																																															
MDM2	4193	MSKCC	GRCh37	12	69203005	69203005	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1442	134	553	0	ENST00000462284.1:c.32A>G	p.Asn11Ser	p.N11S	ENST00000462284	NM_002392.5	11	aAc/aGc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26828827	26828827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	87	557	0	ENST00000381527.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000381527	NM_001260.1	17	Gag/Aag																																																																															
JAK3	3718	MSKCC	GRCh37	19	17941380	17941380	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1443520204		P-0013511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	134	519	0	ENST00000458235.1:c.3028G>A	p.Val1010Ile	p.V1010I	ENST00000458235	NM_000215.3	1010	Gtc/Atc																																																																															
FANCC	2176	MSKCC	GRCh37	9	98011546	98011546	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	74	549	0	ENST00000289081.3:c.28del	p.Cys10ValfsTer36	p.C10Vfs*36	ENST00000289081	NM_000136.2	10	Tgt/gt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	461404	461405	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0013511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	118	578	0	ENST00000399788.2:c.1114_1115dup	p.Asn372LysfsTer19	p.N372Kfs*19	ENST00000399788	NM_001042603.1	372	aat/aaAAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	137	502	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	84	677	1	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579408	7579430	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGCCAGGAGGGGGCTGGTG	CAGGGGCCAGGAGGGGGCTGGTG	-			P-0013528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	47	533	0	ENST00000269305.4:c.257_279delCACCAGCCCCCTCCTGGCCCCTG	p.Ala86ValfsTer55	p.A86Vfs*55	ENST00000269305	NM_001126112.2	86	gCACCAGCCCCCTCCTGGCCCCTG/g																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089710	27089711	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	49	438	0	ENST00000324856.7:c.2667dup	p.Met890HisfsTer46	p.M890Hfs*46	ENST00000324856	NM_006015.4	889	ggc/ggCc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44966658	44966658	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0013528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	81	361	0	ENST00000377967.4:c.3882T>G	p.Tyr1294Ter	p.Y1294*	ENST00000377967	NM_021140.2	1294	taT/taG																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	162	543	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0013551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	138	592	1	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213873	66213873	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	184	884	2	ENST00000273854.3:c.2557C>T	p.Arg853Ter	p.R853*	ENST00000273854	NM_004439.5	853	Cga/Tga																																																																															
MGA	23269	MSKCC	GRCh37	15	41961418	41961418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	179	1314	5	ENST00000219905.7:c.326G>A	p.Arg109His	p.R109H	ENST00000219905	NM_001164273.1	109	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	52	793	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0013564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	63	868	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0013564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	44	407	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591933	48591933	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1060500733		P-0013564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	60	778	0	ENST00000342988.3:c.1096C>T	p.Gln366Ter	p.Q366*	ENST00000342988	NM_005359.5	366	Caa/Taa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967847	93967847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	68	1565	0	ENST00000369303.4:c.2080G>A	p.Val694Ile	p.V694I	ENST00000369303	NM_004440.3	694	Gtt/Att																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0013568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	189	540	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522416	176522416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	169	624	0	ENST00000292408.4:c.1605C>A	p.Asn535Lys	p.N535K	ENST00000292408	NM_213647.1	535	aaC/aaA																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729159	66729159	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	170	694	0	ENST00000307102.5:c.367T>C	p.Ser123Pro	p.S123P	ENST00000307102	NM_002755.3	123	Tct/Cct																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3794958	3794958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	61	558	1	ENST00000262367.5:c.3919G>A	p.Val1307Met	p.V1307M	ENST00000262367	NM_004380.2	1307	Gtg/Atg																																																																															
CDH1	999	MSKCC	GRCh37	16	68772261	68772261	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	84	775	0	ENST00000261769.5:c.110A>G	p.Tyr37Cys	p.Y37C	ENST00000261769	NM_004360.3	37	tAc/tGc																																																																															
CDH1	999	MSKCC	GRCh37	16	68857487	68857487	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			55	131	471	0	ENST00000261769.5:c.2123del	p.Pro708LeufsTer14	p.P708Lfs*14	ENST00000261769	NM_004360.3	708	Cct/ct																																																																															
XPO1	7514	MSKCC	GRCh37	2	61715319	61715319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	96	769	1	ENST00000401558.2:c.2294G>A	p.Arg765Gln	p.R765Q	ENST00000401558	NM_003400.3	765	cGa/cAa																																																																															
RAD21	5885	MSKCC	GRCh37	8	117869710	117869710	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	45	861	0	ENST00000297338.2:c.484G>A	p.Asp162Asn	p.D162N	ENST00000297338	NM_006265.2	162	Gat/Aat																																																																															
BTK	695	MSKCC	GRCh37	X	100611858	100611858	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	93	1143	0	ENST00000308731.7:c.1263del	p.Trp421Ter	p.W421*	ENST00000308731	NM_000061.2	421	tgG/tg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0013594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	180	474	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0013594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	65	272	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0013594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	51	588	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78428511	78428511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	115	678	0	ENST00000370768.2:c.1288C>T	p.Arg430Cys	p.R430C	ENST00000370768	NM_003902.3	430	Cgt/Tgt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346688	89346688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	106	664	2	ENST00000301030.4:c.6262G>A	p.Ala2088Thr	p.A2088T	ENST00000301030	NM_001256183.1	2088	Gct/Act																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662938	227662938	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	84	723	0	ENST00000305123.5:c.517C>G	p.Leu173Val	p.L173V	ENST00000305123	NM_005544.2	173	Ctg/Gtg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41420092	41420092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	121	370	0	ENST00000373198.4:c.229G>A	p.Val77Met	p.V77M	ENST00000373198	NM_133170.3	77	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175511	112176209	+	inframe_deletion	In_Frame_Del	DEL	GTGAACCATGCAGTGGAATGGTAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACAAACCATGCCACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCTTGTTCATCCAGCCTGAGTGCTCTGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGGAATGAAACAGAATCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTCATCACGTAAAGCAAAAAAGCCAGCCCAGACTGCTTCAAAATTACCTCCACCTGTGGCAAGGAAACCAAGTCAGCTGCCTGTGTACAAACTTCTACCATCACAAAACAGGTTGCAACCCCAAAAGCATGTTAGTTTTACACCGGGGGATGATATGCCAC	GTGAACCATGCAGTGGAATGGTAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACAAACCATGCCACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCTTGTTCATCCAGCCTGAGTGCTCTGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGGAATGAAACAGAATCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTCATCACGTAAAGCAAAAAAGCCAGCCCAGACTGCTTCAAAATTACCTCCACCTGTGGCAAGGAAACCAAGTCAGCTGCCTGTGTACAAACTTCTACCATCACAAAACAGGTTGCAACCCCAAAAGCATGTTAGTTTTACACCGGGGGATGATATGCCAC	-			P-0013594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	248	503	0	ENST00000257430.4:c.4221_4919del	p.Ser1407_Pro1639del	p.S1407_P1639del	ENST00000257430	NM_000038.5	1407	aGTGAACCATGCAGTGGAATGGTAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACAAACCATGCCACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCTTGTTCATCCAGCCTGAGTGCTCTGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGGAATGAAACAGAATCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTCATCACGTAAAGCAAAAAAGCCAGCCCAGACTGCTTCAAAATTACCTCCACCTGTGGCAAGGAAACCAAGTCAGCTGCCTGTGTACAAACTTCTACCATCACAAAACAGGTTGCAACCCCAAAAGCATGTTAGTTTTACACCGGGGGATGATATGCCACgg/agg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164838	36164839	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	187	555	0	ENST00000300305.3:c.1036dupC	p.Arg346ProfsTer254	p.R346Pfs*254	ENST00000300305		346	cgc/cCgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0013675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	176	397	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041202	47041202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	176	426	0	ENST00000329236.7:c.1396C>T	p.His466Tyr	p.H466Y	ENST00000329236	NM_001204466.1	466	Cat/Tat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259516	+	missense_variant	Missense_Mutation	DNP	TG	TG	GC			P-0013675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	170	539	0	ENST00000275493.2:c.2573_2574delinsGC	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTG/cGC																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0013682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	177	488	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028611	12028611	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	89	568	1	ENST00000353533.5:c.814C>T	p.Pro272Ser	p.P272S	ENST00000353533	NM_003010.3	272	Cct/Tct																																																																															
EZH2	2146	MSKCC	GRCh37	7	148514448	148514448	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1136	114	701	0	ENST00000320356.2:c.1276A>C	p.Lys426Gln	p.K426Q	ENST00000320356	NM_004456.4	426	Aag/Cag																																																																															
MLL3	58508	MSKCC	GRCh37	7	151877860	151877878	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGTTGGCACAGGTCCAG	GAAGTTGGCACAGGTCCAG	-			P-0013682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	143	547	0	ENST00000262189.6:c.7067_7085del	p.Pro2356GlnfsTer3	p.P2356Qfs*3	ENST00000262189	NM_170606.2	2356	cCTGGACCTGTGCCAACTTCa/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	82	400	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115830	8115830	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	104	783	0	ENST00000346208.3:c.1176C>A	p.Asn392Lys	p.N392K	ENST00000346208		392	aaC/aaA																																																																															
MGA	23269	MSKCC	GRCh37	15	42021478	42021479	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	193	962	0	ENST00000219905.7:c.3775dup	p.Ser1259PhefsTer15	p.S1259Ffs*15	ENST00000219905	NM_001164273.1	1258	-/T																																																																															
NF1	4763	MSKCC	GRCh37	17	29652930	29652930	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	129	545	0	ENST00000358273.4:c.4928T>A	p.Val1643Glu	p.V1643E	ENST00000358273	NM_001042492.2	1643	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	368	572	1	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554093	63554093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	121	756	0	ENST00000307078.5:c.646G>A	p.Gly216Arg	p.G216R	ENST00000307078	NM_004655.3	216	Ggg/Agg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55151591	55151591	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			987	126	615	0	ENST00000257290.5:c.2377T>G	p.Leu793Val	p.L793V	ENST00000257290	NM_006206.4	793	Ttg/Gtg																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197403	26197403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1321	237	972	0	ENST00000356476.2:c.76G>A	p.Ala26Thr	p.A26T	ENST00000356476		26	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0013799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	443	597	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0013799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	200	483	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0013799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	269	354	1	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711002	114711002	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	143	514	2	ENST00000543371.1:c.226C>T	p.Arg76Ter	p.R76*	ENST00000543371	NM_001198531.1	76	Cga/Tga																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871646	35871646	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	149	730	0	ENST00000216797.5:c.860A>T	p.Glu287Val	p.E287V	ENST00000216797	NM_020529.2	287	gAg/gTg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119745	17119745	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	120	581	0	ENST00000285071.4:c.1249T>G	p.Phe417Val	p.F417V	ENST00000285071	NM_144997.5	417	Ttc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0013820-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	622	730	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68352639	68352639	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013820-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	154	557	0	ENST00000487270.1:c.506A>G	p.Lys169Arg	p.K169R	ENST00000487270	NM_133509.3	169	aAg/aGg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119595300	119595300	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013820-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	455	686	0	ENST00000316626.5:c.869A>C	p.Glu290Ala	p.E290A	ENST00000316626		290	gAa/gCa																																																																															
MLL2	8085	MSKCC	GRCh37	12	49434502	49434502	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	280	436	0	ENST00000301067.7:c.7051G>T	p.Glu2351Ter	p.E2351*	ENST00000301067	NM_003482.3	2351	Gag/Tag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32930723	32930723	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	306	462	0	ENST00000380152.3:c.7596del	p.Ser2533LeufsTer18	p.S2533Lfs*18	ENST00000380152		2532	Ccc/cc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828257	72828257	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	31	1190	2	ENST00000268489.5:c.8324delC	p.Pro2775GlnfsTer14	p.P2775Qfs*14	ENST00000268489	NM_006885.3	2775	cCa/ca																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870895	12870895	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0013850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	19	400	0	ENST00000228872.4:c.122T>G	p.Leu41Ter	p.L41*	ENST00000228872	NM_004064.3	41	tTa/tGa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44928899	44928899	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	14	477	0	ENST00000377967.4:c.1999C>T	p.Gln667Ter	p.Q667*	ENST00000377967	NM_021140.2	667	Cag/Tag																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0013860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	140	495	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	17	548	1	ENST00000263967.3:c.3132T>A	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaA																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96920652	96920652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	52	665	0	ENST00000258439.3:c.328G>T	p.Ala110Ser	p.A110S	ENST00000258439	NM_001193304.2	110	Gct/Tct																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143029325	143029325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	46	399	0	ENST00000262992.4:c.2295G>T	p.Leu765Phe	p.L765F	ENST00000262992	NM_001101669.1	765	ttG/ttT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249016	55249017	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCCACG			P-0013860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	309	628	0	ENST00000275493.2:c.2315_2320dup	p.His773_Val774insAlaHis	p.H773_V774insAH	ENST00000275493	NM_005228.3	772	ccc/cCCCACGcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0013870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	109	497	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	61	417	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578490	7578490	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	96	528	0	ENST00000269305.4:c.440T>G	p.Val147Gly	p.V147G	ENST00000269305	NM_001126112.2	147	gTt/gGt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170729	11170729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	106	613	1	ENST00000344626.4:c.4777G>A	p.Val1593Ile	p.V1593I	ENST00000344626	NM_003072.3	1593	Gtc/Atc																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741697	17741697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	83	459	1	ENST00000250003.3:c.368G>A	p.Ser123Asn	p.S123N	ENST00000250003	NM_002478.4	123	aGc/aAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0013901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	81	265	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160679	56160680	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	214	611	0	ENST00000399503.3:c.954dupA	p.Leu319ThrfsTer7	p.L319Tfs*7	ENST00000399503	NM_005921.1	318	tta/ttAa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870895	12870895	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0013901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	56	356	0	ENST00000228872.4:c.122T>G	p.Leu41Ter	p.L41*	ENST00000228872	NM_004064.3	41	tTa/tGa																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871035	12871035	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	137	415	1	ENST00000228872.4:c.262del	p.Tyr88ThrfsTer31	p.Y88Tfs*31	ENST00000228872	NM_004064.3	88	Tac/ac																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66781595	66781595	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	133	608	0	ENST00000307102.5:c.1003C>T	p.Gln335Ter	p.Q335*	ENST00000307102	NM_002755.3	335	Caa/Taa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177100	56177100	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0013901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	82	225	0	ENST00000399503.3:c.2369+1G>A		p.X790_splice	ENST00000399503	NM_005921.1	790																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8636743	8636743	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	46	357	0	ENST00000356435.5:c.166G>T	p.Val56Phe	p.V56F	ENST00000356435		56	Gtc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576876	7576876	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	184	690	4	ENST00000269305.4:c.970del	p.Asp324MetfsTer21	p.D324Mfs*21	ENST00000269305	NM_001126112.2	324	Gat/at																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427711	72427711	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	92	574	0	ENST00000477973.2:c.777C>A	p.Thr260Lys	p.T260K	ENST00000477973	NM_012234.5	260	aCa/aAa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149502612	149502612	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	44	318	0	ENST00000261799.4:c.2176C>G	p.Leu726Val	p.L726V	ENST00000261799	NM_002609.3	726	Ctg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	205	633	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0013941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	85	166	0				ENST00000310581	NM_198253.2																																																																																	
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0013941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	255	636	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108216568	108216568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	62	605	0	ENST00000278616.4:c.8517C>A	p.Phe2839Leu	p.F2839L	ENST00000278616	NM_000051.3	2839	ttC/ttA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593466	48593466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	113	495	1	ENST00000342988.3:c.1217C>T	p.Ala406Val	p.A406V	ENST00000342988	NM_005359.5	406	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0013941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	69	371	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153245501	153245501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1024060344		P-0013941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	65	468	2	ENST00000281708.4:c.1690C>T	p.Arg564Cys	p.R564C	ENST00000281708	NM_033632.3	564	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112174310	112174310	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	115	440	0	ENST00000257430.4:c.3022del	p.Ile1008TyrfsTer14	p.I1008Yfs*14	ENST00000257430	NM_000038.5	1007	Aaa/aa																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271492	26271492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1311	470	1198	0	ENST00000305910.3:c.121C>G	p.Arg41Gly	p.R41G	ENST00000305910	NM_003534.2	41	Cgc/Ggc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44920620	44920620	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1147	201	669	3	ENST00000377967.4:c.1381C>T	p.Gln461Ter	p.Q461*	ENST00000377967	NM_021140.2	461	Cag/Tag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685288	89685289	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	113	318	0	ENST00000371953.3:c.188dupA	p.Asn63LysfsTer11	p.N63Kfs*11	ENST00000371953	NM_000314.4	61	-/A																																																																															
FAT1	2195	MSKCC	GRCh37	4	187549397	187549397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	285	824	2	ENST00000441802.2:c.4721C>T	p.Ser1574Leu	p.S1574L	ENST00000441802	NM_005245.3	1574	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	25	685	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0014005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	3328	531	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
WT1	7490	MSKCC	GRCh37	11	32414214	32414214	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0014005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1128	142	692	0	ENST00000332351.3:c.1337C>T	p.Thr446Ile	p.T446I	ENST00000332351	NM_024426.4	446	aCa/aTa																																																																															
MGA	23269	MSKCC	GRCh37	15	42059419	42059419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1276	251	1085	0	ENST00000219905.7:c.9139G>A	p.Ala3047Thr	p.A3047T	ENST00000219905	NM_001164273.1	3047	Gca/Aca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578501	7578502	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0014005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	181	509	0	ENST00000269305.4:c.428_429delTG	p.Val143AlafsTer5	p.V143Afs*5	ENST00000269305	NM_001126112.2	143	gTG/g																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288317	21288317	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1468	229	747	1	ENST00000354336.3:c.562G>T	p.Gly188Ter	p.G188*	ENST00000354336	NM_005207.3	188	Gga/Tga																																																																															
AR	367	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			4344	192	488	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0014009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	312	597	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
MLL3	58508	MSKCC	GRCh37	7	151843694	151843717	+	inframe_deletion	In_Frame_Del	DEL	ATGCGTGCCACTGCAGAGACGGTC	ATGCGTGCCACTGCAGAGACGGTC	-			P-0014009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	233	438	0	ENST00000262189.6:c.13998_14021del	p.Thr4667_Ile4674del	p.T4667_I4674del	ENST00000262189	NM_170606.2	4666	ctGACCGTCTCTGCAGTGGCACGCATa/cta																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900164	101900164	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	267	514	0	ENST00000374994.4:c.598A>G	p.Thr200Ala	p.T200A	ENST00000374994	NM_004612.2	200	Aca/Gca																																																																															
TSC1	7248	MSKCC	GRCh37	9	135798764	135798764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	81	393	1	ENST00000298552.3:c.479G>A	p.Arg160His	p.R160H	ENST00000298552	NM_001162426.1	160	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0014065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	83	387	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
ATM	472	MSKCC	GRCh37	11	108143579	108143579	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0014065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	72	370	0	ENST00000278616.4:c.3284G>T	p.Arg1095Ile	p.R1095I	ENST00000278616	NM_000051.3	1095	aGa/aTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0014129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	79	598	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563077	21563077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	68	484	1	ENST00000382592.4:c.842C>T	p.Pro281Leu	p.P281L	ENST00000382592	NM_014572.2	281	cCg/cTg																																																																															
MST1	4485	MSKCC	GRCh37	3	49723122	49723122	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	53	579	0	ENST00000449682.2:c.1294T>G	p.Phe432Val	p.F432V	ENST00000449682	NM_020998.3	432	Ttc/Gtc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591116	67591151	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TTATCCAGCTGAGAAAGACGAGAGACCAATACTTGA	TTATCCAGCTGAGAAAGACGAGAGACCAATACTTGA	-			P-0014129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	29	390	0	ENST00000274335.5:c.1710_1745del	p.Ile571_Met582del	p.I571_M582del	ENST00000274335		570	cTTATCCAGCTGAGAAAGACGAGAGACCAATACTTGAtg/ctg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	566	486	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913500		P-0014139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	264	478	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736342	243736342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	152	524	3	ENST00000263826.5:c.705C>A	p.Phe235Leu	p.F235L	ENST00000263826	NM_005465.4	235	ttC/ttA																																																																															
ATM	472	MSKCC	GRCh37	11	108150268	108150269	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	223	531	0	ENST00000278616.4:c.3338dup	p.Leu1113PhefsTer9	p.L1113Ffs*9	ENST00000278616	NM_000051.3	1112	cct/ccTt																																																																															
ATM	472	MSKCC	GRCh37	11	108218092	108218092	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0014139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	136	288	0	ENST00000278616.4:c.8671G>T	p.Gly2891Cys	p.G2891C	ENST00000278616	NM_000051.3	2891	Ggt/Tgt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28636144	28636144	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	222	669	1	ENST00000241453.7:c.228C>A	p.Tyr76Ter	p.Y76*	ENST00000241453	NM_004119.2	76	taC/taA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467557	66467557	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	326	584	0	ENST00000273854.3:c.712C>T	p.Arg238Ter	p.R238*	ENST00000273854	NM_004439.5	238	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410365	63410365	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	570	544	1	ENST00000330258.3:c.2802G>C	p.Glu934Asp	p.E934D	ENST00000330258	NM_152424.3	934	gaG/gaC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0014149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	15	471	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0014149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	86	421	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628470	187628470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	67	607	1	ENST00000441802.2:c.2512C>A	p.His838Asn	p.H838N	ENST00000441802	NM_005245.3	838	Cat/Aat																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637295	176637295	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201702515		P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	153	451	1	ENST00000439151.2:c.1895G>A	p.Arg632Gln	p.R632Q	ENST00000439151	NM_022455.4	632	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	793	805	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15973811	15973811	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	370	473	0	ENST00000268712.3:c.4181C>G	p.Ser1394Ter	p.S1394*	ENST00000268712	NM_006311.3	1394	tCa/tGa																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197399	26197399	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1620	313	1244	0	ENST00000356476.2:c.80G>C	p.Arg27Pro	p.R27P	ENST00000356476		27	cGa/cCa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024491	31024491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	166	606	0	ENST00000375687.4:c.3976C>T	p.Pro1326Ser	p.P1326S	ENST00000375687	NM_015338.5	1326	Cct/Tct																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174379	11174379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	245	566	0	ENST00000361445.4:c.7296G>A	p.Met2432Ile	p.M2432I	ENST00000361445	NM_004958.3	2432	atG/atA																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9776498	9776498	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	225	666	0	ENST00000377346.4:c.601G>C	p.Glu201Gln	p.E201Q	ENST00000377346	NM_005026.3	201	Gag/Cag																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784137	9784137	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202142608		P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	179	503	1	ENST00000377346.4:c.2705G>A	p.Arg902Gln	p.R902Q	ENST00000377346	NM_005026.3	902	cGa/cAa																																																																															
MPL	4352	MSKCC	GRCh37	1	43805735	43805735	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	342	798	0	ENST00000372470.3:c.791C>G	p.Ser264Cys	p.S264C	ENST00000372470	NM_005373.2	264	tCc/tGc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156848963	156848963	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	370	627	0	ENST00000524377.1:c.1855C>G	p.Pro619Ala	p.P619A	ENST00000524377	NM_002529.3	619	Cca/Gca																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100630	8100630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	69	761	0	ENST00000346208.3:c.604C>T	p.Arg202Cys	p.R202C	ENST00000346208		202	Cgt/Tgt																																																																															
RET	5979	MSKCC	GRCh37	10	43623634	43623635	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	315	599	0	ENST00000355710.3:c.3262_3263delinsAA	p.Pro1088Lys	p.P1088K	ENST00000355710	NM_020975.4	1088	CCa/AAa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123247602	123247602	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	386	512	0	ENST00000358487.5:c.1889G>C	p.Arg630Thr	p.R630T	ENST00000358487	NM_000141.4	630	aGa/aCa																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518601	69518601	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	62	244	0	ENST00000294312.3:c.44G>C	p.Gly15Ala	p.G15A	ENST00000294312	NM_005117.2	15	gGc/gCc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195243	102195243	+	start_lost	Translation_Start_Site	SNP	G	G	C			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	238	776	0	ENST00000263464.3:c.3G>C	p.Met1?	p.M1?	ENST00000263464	NM_001165.4	1	atG/atC																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865801	57865801	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	1026	1267	0	ENST00000228682.2:c.3278G>C	p.Arg1093Thr	p.R1093T	ENST00000228682	NM_005269.2	1093	aGa/aCa																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349250	11349250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	57	166	0	ENST00000332029.2:c.86C>T	p.Ser29Phe	p.S29F	ENST00000332029	NM_003745.1	29	tCc/tTc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56873439	56873439	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	724	1141	0	ENST00000308159.5:c.2143G>C	p.Glu715Gln	p.E715Q	ENST00000308159	NM_014669.4	715	Gag/Cag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992774	72992774	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1208	310	1042	0	ENST00000268489.5:c.1271C>A	p.Ala424Asp	p.A424D	ENST00000268489	NM_006885.3	424	gCt/gAt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16075133	16075133	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	99	367	0	ENST00000268712.3:c.419C>G	p.Ser140Cys	p.S140C	ENST00000268712	NM_006311.3	140	tCt/tGt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41223192	41223192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	528	585	0	ENST00000357654.3:c.4739C>T	p.Ser1580Phe	p.S1580F	ENST00000357654	NM_007294.3	1580	tCt/tTt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41223201	41223201	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	522	560	0	ENST00000357654.3:c.4730C>G	p.Ser1577Cys	p.S1577C	ENST00000357654	NM_007294.3	1577	tCt/tGt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761499	59761499	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	75	272	0	ENST00000259008.2:c.2908G>T	p.Asp970Tyr	p.D970Y	ENST00000259008	NM_032043.2	970	Gat/Tat																																																																															
TCF3	6929	MSKCC	GRCh37	19	1627384	1627384	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	305	898	0	ENST00000344749.5:c.340G>C	p.Asp114His	p.D114H	ENST00000344749	NM_001136139.2	114	Gac/Cac																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793134	33793134	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1478	205	681	0	ENST00000498907.2:c.187G>C	p.Asp63His	p.D63H	ENST00000498907	NM_004364.3	63	Gac/Cac																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961366	54961366	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	125	368	0	ENST00000312783.6:c.266C>G	p.Ser89Cys	p.S89C	ENST00000312783	NM_198436.1	89	tCc/tGc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134884907	134884907	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1112	351	692	0	ENST00000398015.3:c.1683C>G	p.Ile561Met	p.I561M	ENST00000398015	NM_004441.4	561	atC/atG																																																																															
ATR	545	MSKCC	GRCh37	3	142268415	142268415	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	105	344	0	ENST00000350721.4:c.3077G>C	p.Arg1026Thr	p.R1026T	ENST00000350721	NM_001184.3	1026	aGa/aCa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217191	66217191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	190	721	0	ENST00000273854.3:c.2424C>G	p.Ile808Met	p.I808M	ENST00000273854	NM_004439.5	808	atC/atG																																																																															
TERT	7015	MSKCC	GRCh37	5	1295098	1295098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	62	111	1	ENST00000310581.5:c.7C>T	p.Arg3Cys	p.R3C	ENST00000310581	NM_198253.2	3	Cgc/Tgc																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197253	26197253	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1928	454	1564	0	ENST00000356476.2:c.226G>C	p.Ala76Pro	p.A76P	ENST00000356476		76	Gcg/Ccg																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89793641	89793641	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	373	595	0	ENST00000336032.3:c.710A>T	p.Gln237Leu	p.Q237L	ENST00000336032	NM_006813.2	237	cAg/cTg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2946340	2946340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	441	681	0	ENST00000396946.4:c.3397C>T	p.Arg1133Cys	p.R1133C	ENST00000396946	NM_032415.4	1133	Cgc/Tgc																																																																															
HGF	3082	MSKCC	GRCh37	7	81355256	81355256	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	219	767	0	ENST00000222390.5:c.1118G>T	p.Arg373Leu	p.R373L	ENST00000222390	NM_000601.4	373	cGa/cTa																																																																															
EZH2	2146	MSKCC	GRCh37	7	148513796	148513796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	464	762	0	ENST00000320356.2:c.1485G>T	p.Arg495Ser	p.R495S	ENST00000320356	NM_004456.4	495	agG/agT																																																																															
AR	367	MSKCC	GRCh37	X	66905896	66905896	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	449	421	0	ENST00000374690.3:c.1813G>C	p.Asp605His	p.D605H	ENST00000374690	NM_000044.3	605	Gat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	155	510	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	49	349	1				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	93	486	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865659	57865659	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	60	1125	0	ENST00000228682.2:c.3136C>T	p.Gln1046Ter	p.Q1046*	ENST00000228682	NM_005269.2	1046	Cag/Tag																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988379	36988379	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	37	195	0	ENST00000354822.5:c.274G>T	p.Gly92Cys	p.G92C	ENST00000354822	NM_001079668.2	92	Ggc/Tgc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95579509	95579509	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	59	359	0	ENST00000343455.3:c.1960A>G	p.Arg654Gly	p.R654G	ENST00000343455	NM_177438.2	654	Aga/Gga																																																																															
MGA	23269	MSKCC	GRCh37	15	42005382	42005382	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	82	1109	0	ENST00000219905.7:c.3118A>G	p.Ile1040Val	p.I1040V	ENST00000219905	NM_001164273.1	1040	Ata/Gta																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004883	16004883	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	93	606	0	ENST00000268712.3:c.2371G>C	p.Glu791Gln	p.E791Q	ENST00000268712	NM_006311.3	791	Gag/Cag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216394	2216394	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	69	458	1	ENST00000398665.3:c.2038G>T	p.Gly680Cys	p.G680C	ENST00000398665	NM_032482.2	680	Ggc/Tgc																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792825	33792825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	28	385	0	ENST00000498907.2:c.496G>A	p.Glu166Lys	p.E166K	ENST00000498907	NM_004364.3	166	Gag/Aag																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714643	52714643	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	114	533	0	ENST00000322088.6:c.401G>T	p.Arg134Leu	p.R134L	ENST00000322088	NM_014225.5	134	cGg/cTg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523040	25523040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	80	865	2	ENST00000264709.3:c.145G>A	p.Gly49Arg	p.G49R	ENST00000264709	NM_175629.2	49	Ggg/Agg																																																																															
BARD1	580	MSKCC	GRCh37	2	215657105	215657105	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	48	568	0	ENST00000260947.4:c.280G>C	p.Asp94His	p.D94H	ENST00000260947	NM_000465.2	94	Gac/Cac																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29095859	29095859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	101	711	0	ENST00000328354.6:c.975G>T	p.Lys325Asn	p.K325N	ENST00000328354	NM_007194.3	325	aaG/aaT																																																																															
EP300	2033	MSKCC	GRCh37	22	41566550	41566550	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	44	631	0	ENST00000263253.7:c.4427C>G	p.Ser1476Ter	p.S1476*	ENST00000263253	NM_001429.3	1476	tCa/tGa																																																																															
MITF	4286	MSKCC	GRCh37	3	69998250	69998250	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	105	592	0	ENST00000352241.4:c.811C>G	p.Pro271Ala	p.P271A	ENST00000352241	NM_198159.2	271	Ccc/Gcc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247442	71247442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	105	648	0	ENST00000318789.4:c.91G>T	p.Gly31Cys	p.G31C	ENST00000318789	NM_032682.5	31	Ggt/Tgt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721016	176721016	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	78	517	0	ENST00000439151.2:c.6647G>T	p.Gly2216Val	p.G2216V	ENST00000439151	NM_022455.4	2216	gGg/gTg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30674464	30675162	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGGGAGGCTGAGGGAGGAGAGTCGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTGTCTCAAAAAAAACAAAAAAATACACAAAAATTAGCCGGGTGACATGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGCGGCAGGAAAATTGTTTGAACCCAAGAGACGGAGGTTACAGTAAGCTGAGATCACGCCACTGCACACTCCAGCCTGGGTGACAGAGACAGACTCTGTCTCAAAAAAGAACAAAAACAAAAAATATGCTCACTGGATTTTCCTTTCTGTCTATGATCTCTCCTCCATTAGACTGGGATCTACCTGGGAAGCTACCTTTTTCCCACAGACCTGTCTCCATAATGCTACTATAGTGTTCTCCACACGTGGATGATGGTAAGGAAAAGGATGGCTGGGGCAAAGAAAGAAGAAACACGAAGGGTCTTTCTTTTGAGTCAGGTAGGAGATACAACTTAGGAAACAGATATGGAAAACAACGGGTGCCGAGGATAAAGGAATAGAAGCCAATCAAGGCGTGACAAAAATGGAAGAAAACTGAATAATGAGAAAGGAATAGATTAAAGTGAGGCTAGGTGAAAGAGCATTGGAGAAGATATAGAGATGACTTGTGGAATAGGAGGTAGAAAAAGTAGCTCTCACCC	CCTGGGAGGCTGAGGGAGGAGAGTCGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTGTCTCAAAAAAAACAAAAAAATACACAAAAATTAGCCGGGTGACATGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGCGGCAGGAAAATTGTTTGAACCCAAGAGACGGAGGTTACAGTAAGCTGAGATCACGCCACTGCACACTCCAGCCTGGGTGACAGAGACAGACTCTGTCTCAAAAAAGAACAAAAACAAAAAATATGCTCACTGGATTTTCCTTTCTGTCTATGATCTCTCCTCCATTAGACTGGGATCTACCTGGGAAGCTACCTTTTTCCCACAGACCTGTCTCCATAATGCTACTATAGTGTTCTCCACACGTGGATGATGGTAAGGAAAAGGATGGCTGGGGCAAAGAAAGAAGAAACACGAAGGGTCTTTCTTTTGAGTCAGGTAGGAGATACAACTTAGGAAACAGATATGGAAAACAACGGGTGCCGAGGATAAAGGAATAGAAGCCAATCAAGGCGTGACAAAAATGGAAGAAAACTGAATAATGAGAAAGGAATAGATTAAAGTGAGGCTAGGTGAAAGAGCATTGGAGAAGATATAGAGATGACTTGTGGAATAGGAGGTAGAAAAAGTAGCTCTCACCC	-			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	55	0	0	ENST00000376406.3:c.3083_3085-589del		p.X1028_splice	ENST00000376406	NM_014641.2	1028																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	108	850	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1721	519	1790	0	ENST00000374672.4:c.1225A>C	p.Lys409Gln	p.K409Q	ENST00000374672	NM_004235.4	409	Aag/Cag																																																																															
MGA	23269	MSKCC	GRCh37	15	42041855	42041855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	171	622	0	ENST00000219905.7:c.6050C>T	p.Ser2017Leu	p.S2017L	ENST00000219905	NM_001164273.1	2017	tCa/tTa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164664	36164665	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1447	332	1137	0	ENST00000300305.3:c.1210_1211insT	p.His404LeufsTer196	p.H404Lfs*196	ENST00000300305		404	cac/cTac																																																																															
PARK2	5071	MSKCC	GRCh37	6	162394333	162394333	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0014200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	31	321	0	ENST00000366898.1:c.734+1del		p.X245_splice	ENST00000366898	NM_004562.2	245																																																																																
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	78	514	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	295	527	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	267	1011	0	ENST00000269305.4:c.472C>G	p.Arg158Gly	p.R158G	ENST00000269305	NM_001126112.2	158	Cgc/Ggc																																																																															
EP300	2033	MSKCC	GRCh37	22	41537100	41537100	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	90	478	1	ENST00000263253.7:c.1927G>T	p.Glu643Ter	p.E643*	ENST00000263253	NM_001429.3	643	Gaa/Taa																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969882	81969882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	142	693	1	ENST00000359376.3:c.2951G>A	p.Arg984His	p.R984H	ENST00000359376	NM_002661.3	984	cGc/cAc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11204785	11204785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	59	509	0	ENST00000361445.4:c.4792G>A	p.Glu1598Lys	p.E1598K	ENST00000361445	NM_004958.3	1598	Gag/Aag																																																																															
PGR	5241	MSKCC	GRCh37	11	100999781	100999781	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	216	802	1	ENST00000325455.5:c.21G>T	p.Lys7Asn	p.K7N	ENST00000325455	NM_001202474.3	7	aaG/aaT																																																																															
DIS3	22894	MSKCC	GRCh37	13	73345061	73345061	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	169	453	0	ENST00000377767.4:c.1736A>G	p.Lys579Arg	p.K579R	ENST00000377767	NM_014953.3	579	aAa/aGa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610687	81610687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	95	414	0	ENST00000298171.2:c.2285C>A	p.Thr762Lys	p.T762K	ENST00000298171	NM_000369.2	762	aCg/aAg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37676252	37676252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	81	659	0	ENST00000447079.4:c.3007C>A	p.Leu1003Ile	p.L1003I	ENST00000447079	NM_015083.1	1003	Cta/Ata																																																																															
ALK	238	MSKCC	GRCh37	2	29917851	29917851	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	327	961	0	ENST00000389048.3:c.817G>T	p.Glu273Ter	p.E273*	ENST00000389048	NM_004304.4	273	Gag/Tag																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605066	46605066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	135	1152	3	ENST00000263734.3:c.1283G>A	p.Gly428Asp	p.G428D	ENST00000263734	NM_001430.4	428	gGc/gAc																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111907724	111907724	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	73	297	0	ENST00000393256.3:c.498G>T	p.Arg166Ser	p.R166S	ENST00000393256	NM_006538.4	166	agG/agT																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143129659	143129659	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	56	470	0	ENST00000262992.4:c.991A>T	p.Ser331Cys	p.S331C	ENST00000262992	NM_001101669.1	331	Agc/Tgc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135804187	135804187	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	46	391	0	ENST00000298552.3:c.73G>T	p.Val25Leu	p.V25L	ENST00000298552	NM_001162426.1	25	Gtg/Ttg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	92	692	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	102	505	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0014296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	111	736	2	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0014296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	115	526	2	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354414	354414	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201609463		P-0014296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	248	1006	0	ENST00000262320.3:c.1144C>T	p.Arg382Cys	p.R382C	ENST00000262320	NM_003502.3	382	Cgc/Tgc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9984926	9984926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	179	925	1	ENST00000330684.3:c.1039G>A	p.Asp347Asn	p.D347N	ENST00000330684	NM_001134407.1	347	Gac/Aac																																																																															
CTCF	10664	MSKCC	GRCh37	16	67650647	67650647	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0014296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	105	498	0	ENST00000264010.4:c.953-1G>C		p.X318_splice	ENST00000264010	NM_006565.3	318																																																																																
PRKAR1A	5573	MSKCC	GRCh37	17	66519039	66519039	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	145	597	0	ENST00000358598.2:c.320A>T	p.Glu107Val	p.E107V	ENST00000358598	NM_212471.2	107	gAg/gTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117943	70117967	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACGCTGGGCAAGCTCTGGAGGTAG	GACGCTGGGCAAGCTCTGGAGGTAG	-			P-0014296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	83	413	0	ENST00000245479.2:c.414_431+7del		p.X138_splice	ENST00000245479	NM_000346.3	138																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153251883	153251883	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0014296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	90	472	0	ENST00000281708.4:c.1122+1G>C		p.X374_splice	ENST00000281708	NM_033632.3	374																																																																																
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0014320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	414	1014	2	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112080	115112098	+	frameshift_variant	Frame_Shift_Del	DEL	AGACACCGGTGGAGGCCCC	AGACACCGGTGGAGGCCCC	-			P-0014320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	275	781	0	ENST00000257566.3:c.1642_1660del	p.Gly548ArgfsTer78	p.G548Rfs*78	ENST00000257566	NM_016569.3	548	GGGGCCTCCACCGGTGTCTcg/cg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120647	115120647	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1252	429	961	0	ENST00000257566.3:c.359del	p.Gly120AlafsTer19	p.G120Afs*19	ENST00000257566	NM_016569.3	120	gGc/gc																																																																															
AKT2	208	MSKCC	GRCh37	19	40742247	40742247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	309	745	0	ENST00000392038.2:c.877G>T	p.Asp293Tyr	p.D293Y	ENST00000392038	NM_001626.4	293	Gac/Tac																																																																															
CDH1	999	MSKCC	GRCh37	16	68845616	68845620	+	frameshift_variant	Frame_Shift_Del	DEL	GACGC	GACGC	-			P-0014324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	105	654	0	ENST00000261769.5:c.863_867del	p.Asp288GlyfsTer3	p.D288Gfs*3	ENST00000261769	NM_004360.3	288	GACGCg/g																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831342	72831342	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	57	299	2	ENST00000268489.5:c.5239C>T	p.Gln1747Ter	p.Q1747*	ENST00000268489	NM_006885.3	1747	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927985	+	inframe_deletion	In_Frame_Del	DEL	TGTCCA	TGTCCA	-			P-0014324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	32	258	0	ENST00000263967.3:c.1259_1264del	p.Cys420_Pro421del	p.C420_P421del	ENST00000263967	NM_006218.2	420	TGTCCA/-																																																																															
MLL3	58508	MSKCC	GRCh37	7	152132815	152132815	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	97	584	2	ENST00000262189.6:c.57del	p.Glu20ArgfsTer85	p.E20Rfs*85	ENST00000262189	NM_170606.2	19	ccC/cc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	150	414	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ATM	472	MSKCC	GRCh37	11	108206590	108206590	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	294	319	0	ENST00000278616.4:c.8170C>A	p.Gln2724Lys	p.Q2724K	ENST00000278616	NM_000051.3	2724	Caa/Aaa																																																																															
RET	5979	MSKCC	GRCh37	10	43606702	43606702	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	345	620	1	ENST00000355710.3:c.1311C>A	p.Asn437Lys	p.N437K	ENST00000355710	NM_020975.4	437	aaC/aaA																																																																															
STK11	6794	MSKCC	GRCh37	19	1207197	1207198	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0014387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	423	630	3	ENST00000326873.7:c.285_286del	p.Lys96GlufsTer66	p.K96Efs*66	ENST00000326873	NM_000455.4	95	gtGAag/gtag																																																																															
STK11	6794	MSKCC	GRCh37	19	1220492	1220493	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0014387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	307	465	2	ENST00000326873.7:c.585_586delinsTT	p.Gly196Cys	p.G196C	ENST00000326873	NM_000455.4	195	ctGGgc/ctTTgc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514546	103514547	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	T			P-0014387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	49	233	0	ENST00000355739.4:c.1047_1048delinsT	p.Gln349HisfsTer30	p.Q349Hfs*30	ENST00000355739	NM_000123.3	349	caAGct/caTct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	33	760	1	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118827	115118827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	55	457	0	ENST00000257566.3:c.514G>A	p.Val172Met	p.V172M	ENST00000257566	NM_016569.3	172	Gtg/Atg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435666	110435666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	45	501	0	ENST00000375856.3:c.2735A>G	p.Glu912Gly	p.E912G	ENST00000375856	NM_003749.2	912	gAg/gGg																																																																															
APC	324	MSKCC	GRCh37	5	112175354	112175367	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTCAGGAGCGAA	TCTTCAGGAGCGAA	-			P-0014415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	20	182	0	ENST00000257430.4:c.4063_4076del	p.Ser1355IlefsTer15	p.S1355Ifs*15	ENST00000257430	NM_000038.5	1355	TCTTCAGGAGCGAAa/a																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129186	64129186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	62	806	0	ENST00000334205.4:c.724G>A	p.Gly242Ser	p.G242S	ENST00000334205	NM_003942.2	242	Ggc/Agc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662475	117662475	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0014425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	30	489	0	ENST00000368508.3:c.4903-1G>T		p.X1635_splice	ENST00000368508	NM_002944.2	1635																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	411	458	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	50	668	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061207	38061209	+	inframe_deletion	In_Frame_Del	DEL	CGC	CGC	-			P-0014431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	90	491	0	ENST00000250448.2:c.780_782del	p.Leu260_Arg261delinsPhe	p.L260_R261delinsF	ENST00000250448	NM_004496.3	260	ttGCGc/ttc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061496	38061496	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	118	311	0	ENST00000250448.2:c.493A>T	p.Ser165Cys	p.S165C	ENST00000250448	NM_004496.3	165	Agc/Tgc																																																																															
PAX5	5079	MSKCC	GRCh37	9	37002698	37002698	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	100	578	0	ENST00000358127.4:c.551T>A	p.Ile184Asn	p.I184N	ENST00000358127	NM_001280556.1	184	aTc/aAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0014451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	203	423	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574000	7574000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	161	483	0	ENST00000269305.4:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000269305	NM_001126112.2	343	Gag/Tag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3642785	3642785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	52	538	1	ENST00000294008.3:c.2242G>A	p.Ala748Thr	p.A748T	ENST00000294008	NM_032444.2	748	Gcc/Acc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245967	5245967	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	80	519	1	ENST00000357368.4:c.808G>T	p.Gly270Cys	p.G270C	ENST00000357368	NM_002850.3	270	Ggc/Tgc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39726879	39726879	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	25	173	0	ENST00000361337.2:c.877A>G	p.Ile293Val	p.I293V	ENST00000361337	NM_003286.2	293	Att/Gtt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41268797	41268797	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	28	355	0	ENST00000349496.5:c.1035G>C	p.Lys345Asn	p.K345N	ENST00000349496	NM_001904.3	345	aaG/aaC																																																																															
NPM1	4869	MSKCC	GRCh37	5	170819812	170819812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	37	423	0	ENST00000296930.5:c.451G>A	p.Val151Ile	p.V151I	ENST00000296930	NM_002520.6	151	Gtt/Att																																																																															
CARD11	84433	MSKCC	GRCh37	7	2957002	2957002	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	35	366	0	ENST00000396946.4:c.2625A>C	p.Glu875Asp	p.E875D	ENST00000396946	NM_032415.4	875	gaA/gaC																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508364	106508364	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	42	189	0	ENST00000359195.3:c.358G>C	p.Asp120His	p.D120H	ENST00000359195	NM_002649.2	120	Gac/Cac																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538819	23538819	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	58	257	0	ENST00000380871.4:c.620G>T	p.Arg207Leu	p.R207L	ENST00000380871	NM_006167.3	207	cGg/cTg																																																																															
BTK	695	MSKCC	GRCh37	X	100617175	100617175	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	74	444	0	ENST00000308731.7:c.574C>A	p.Pro192Thr	p.P192T	ENST00000308731	NM_000061.2	192	Cct/Act																																																																															
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519874		P-0014458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	110	302	1	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62303948	62303948	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1363	164	436	1	ENST00000508582.2:c.811G>T	p.Val271Leu	p.V271L	ENST00000508582		271	Gtg/Ttg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517756	187517756	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	45	142	0	ENST00000441802.2:c.12938C>G	p.Pro4313Arg	p.P4313R	ENST00000441802	NM_005245.3	4313	cCt/cGt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176710863	176710863	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	116	339	0	ENST00000439151.2:c.6085A>G	p.Thr2029Ala	p.T2029A	ENST00000439151	NM_022455.4	2029	Aca/Gca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319931	8319931	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	129	244	0	ENST00000356435.5:c.5570T>A	p.Leu1857Gln	p.L1857Q	ENST00000356435		1857	cTa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	576	374	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0014468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	353	530	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692830	89692830	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782343		P-0014484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	28	181	0	ENST00000371953.3:c.314G>A	p.Cys105Tyr	p.C105Y	ENST00000371953	NM_000314.4	105	tGt/tAt																																																																															
CDH1	999	MSKCC	GRCh37	16	68772299	68772321	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGCGTCCTGGGCAGAGGTGAGGG	CGCGTCCTGGGCAGAGGTGAGGG	-			P-0014484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	111	650	0	ENST00000261769.5:c.152_163+11del		p.X51_splice	ENST00000261769	NM_004360.3	51																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	30	444	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	96	465	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964199	28964199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	70	286	0	ENST00000282397.4:c.1703C>T	p.Thr568Met	p.T568M	ENST00000282397	NM_002019.4	568	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578386	7578387	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGCT			P-0014512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	88	421	0	ENST00000269305.4:c.539_543dup	p.Cys182SerfsTer67	p.C182Sfs*67	ENST00000269305	NM_001126112.2	181	-/AGCGC																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7984290	7984290	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	104	518	1	ENST00000319144.4:c.439C>T	p.Arg147Ter	p.R147*	ENST00000319144	NM_001139.2	147	Cga/Tga																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	226	612	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0014516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	263	532	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969884	81969884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199840870		P-0014519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	91	507	2	ENST00000359376.3:c.2953G>A	p.Val985Ile	p.V985I	ENST00000359376	NM_002661.3	985	Gtc/Atc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741614	145741614	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	84	493	0	ENST00000428558.2:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000428558	NM_004260.3	297	Gac/Tac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0014532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	63	430	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs780442292		P-0014555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	1046	710	0	ENST00000269305.4:c.401T>G	p.Phe134Cys	p.F134C	ENST00000269305	NM_001126112.2	134	tTt/tGt																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0014555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	266	248	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509447	106509447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	426	338	0	ENST00000359195.3:c.1441G>A	p.Val481Ile	p.V481I	ENST00000359195	NM_002649.2	481	Gtc/Atc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921468	39921468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	57	462	0	ENST00000378444.4:c.4352C>T	p.Pro1451Leu	p.P1451L	ENST00000378444	NM_001123385.1	1451	cCg/cTg																																																																															
CBL	867	MSKCC	GRCh37	11	119146799	119146799	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	195	318	0	ENST00000264033.4:c.962A>G	p.Asn321Ser	p.N321S	ENST00000264033	NM_005188.3	321	aAt/aGt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465574	99465574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	233	332	2	ENST00000268035.6:c.2399G>A	p.Arg800His	p.R800H	ENST00000268035	NM_000875.3	800	cGc/cAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396839	396839	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145608130		P-0014555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	161	405	0	ENST00000262320.3:c.187C>T	p.Arg63Cys	p.R63C	ENST00000262320	NM_003502.3	63	Cgc/Tgc																																																																															
ALK	238	MSKCC	GRCh37	2	29754937	29754937	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	210	348	0	ENST00000389048.3:c.998T>A	p.Ile333Asn	p.I333N	ENST00000389048	NM_004304.4	333	aTc/aAc																																																																															
TEK	7010	MSKCC	GRCh37	9	27169625	27169625	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0014555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	477	372	1	ENST00000380036.4:c.626G>A	p.Arg209Gln	p.R209Q	ENST00000380036	NM_000459.3	209	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0014565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	186	727	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175539	112175539	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	73	354	0	ENST00000257430.4:c.4248del	p.Ile1417LeufsTer2	p.I1417Lfs*2	ENST00000257430	NM_000038.5	1416	ggC/gg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0014565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	89	475	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913080	32913080	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	104	526	0	ENST00000380152.3:c.4588A>G	p.Lys1530Glu	p.K1530E	ENST00000380152		1530	Aaa/Gaa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646198	3646198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	100	621	0	ENST00000294008.3:c.1880C>T	p.Pro627Leu	p.P627L	ENST00000294008	NM_032444.2	627	cCg/cTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106190905	106190906	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0014565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	38	264	0	ENST00000380013.4:c.4182+2dup		p.X1394_splice	ENST00000380013	NM_001127208.2	1394																																																																																
IKZF1	10320	MSKCC	GRCh37	7	50444489	50444489	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0014565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	23	212	0	ENST00000331340.3:c.419C>A	p.Thr140Asn	p.T140N	ENST00000331340	NM_006060.4	140	aCt/aAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0014572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	252	500	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0014572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	128	668	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741545	17741546	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0014572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	50	431	1	ENST00000250003.3:c.216_217delinsAA	p.Pro73Thr	p.P73T	ENST00000250003	NM_002478.4	72	gcCCcg/gcAAcg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134378	41134378	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	77	367	0	ENST00000379561.5:c.1250C>G	p.Pro417Arg	p.P417R	ENST00000379561	NM_002015.3	417	cCc/cGc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719287	190719287	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	22	205	0	ENST00000441310.2:c.1289A>G	p.Lys430Arg	p.K430R	ENST00000441310	NM_000534.4	430	aAa/aGa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188806	32188807	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0014572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	56	564	1	ENST00000375023.3:c.747_748delinsAA	p.Cys249_Gln250delinsTer	p.C249_Q250delins*	ENST00000375023	NM_004557.3	249	tgCCag/tgAAag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	510	777	0	ENST00000269305.4:c.379T>C	p.Ser127Pro	p.S127P	ENST00000269305	NM_001126112.2	127	Tcc/Ccc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463248	25463248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	37	455	0	ENST00000264709.3:c.2245C>T	p.Arg749Cys	p.R749C	ENST00000264709	NM_175629.2	749	Cgc/Tgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624297	89624297	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	314	762	0	ENST00000371953.3:c.71A>T	p.Asp24Val	p.D24V	ENST00000371953	NM_000314.4	24	gAc/gTc																																																																															
RB1	5925	MSKCC	GRCh37	13	48921999	48921999	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0014613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	175	422	0	ENST00000267163.4:c.539C>A	p.Ser180Ter	p.S180*	ENST00000267163	NM_000321.2	180	tCg/tAg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17127259	17127259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	227	670	0	ENST00000285071.4:c.595G>A	p.Glu199Lys	p.E199K	ENST00000285071	NM_144997.5	199	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	194	719	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	386	869	11	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	69	599	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
TSC1	7248	MSKCC	GRCh37	9	135772951	135772951	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	132	631	0	ENST00000298552.3:c.2672del	p.Asn891ThrfsTer40	p.N891Tfs*40	ENST00000298552	NM_001162426.1	891	aAc/ac																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32181929	32181929	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	192	1069	0	ENST00000375023.3:c.2125del	p.Gln709SerfsTer22	p.Q709Sfs*22	ENST00000375023	NM_004557.3	709	Cag/ag																																																																															
CDC73	79577	MSKCC	GRCh37	1	193107258	193107258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	103	473	0	ENST00000367435.3:c.467G>A	p.Arg156His	p.R156H	ENST00000367435	NM_024529.4	156	cGt/cAt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	244	812	6	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	334	677	7	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969968	161969968	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746215864		P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	216	855	2	ENST00000366898.1:c.1001G>A	p.Arg334His	p.R334H	ENST00000366898	NM_004562.2	334	cGc/cAc																																																																															
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	143	650	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	271	876	3	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962854	2962854	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	201	1140	3	ENST00000396946.4:c.2054delG	p.Gly685AlafsTer31	p.G685Afs*31	ENST00000396946	NM_032415.4	685	gGc/gc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	265	1190	10	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152104	11152104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	225	982	0	ENST00000344626.4:c.4292G>A	p.Arg1431His	p.R1431H	ENST00000344626	NM_003072.3	1431	cGc/cAc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984672	11984672	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	114	488	0	ENST00000353533.5:c.219-1G>C		p.X73_splice	ENST00000353533	NM_003010.3	73																																																																																
RPS6KA4	8986	MSKCC	GRCh37	11	64132907	64132907	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	234	1080	2	ENST00000334205.4:c.1046delC	p.Pro349HisfsTer26	p.P349Hfs*26	ENST00000334205	NM_003942.2	347	agC/ag																																																																															
RET	5979	MSKCC	GRCh37	10	43601840	43601840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	165	748	0	ENST00000355710.3:c.884C>T	p.Thr295Met	p.T295M	ENST00000355710	NM_020975.4	295	aCg/aTg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572113	64572113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	206	857	2	ENST00000337652.1:c.1541G>A	p.Gly514Asp	p.G514D	ENST00000337652	NM_130803.2	514	gGt/gAt																																																																															
MLL2	8085	MSKCC	GRCh37	12	49424138	49424138	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200638996		P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	257	1230	2	ENST00000301067.7:c.13924G>A	p.Val4642Ile	p.V4642I	ENST00000301067	NM_003482.3	4642	Gtc/Atc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514790	103514790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	141	584	0	ENST00000355739.4:c.1291G>T	p.Gly431Ter	p.G431*	ENST00000355739	NM_000123.3	431	Gga/Tga																																																																															
B2M	567	MSKCC	GRCh37	15	45007794	45007797	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	62	578	0	ENST00000558401.1:c.244_247del	p.Phe82IlefsTer20	p.F82Ifs*20	ENST00000558401	NM_004048.2	81	TCTTtc/tc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129065	2129066	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	86	880	0	ENST00000219476.3:c.3003dup	p.Ser1002ValfsTer4	p.S1002Vfs*4	ENST00000219476	NM_000548.3	1000	ttg/ttGg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17129567	17129567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	281	1179	3	ENST00000285071.4:c.319G>A	p.Val107Ile	p.V107I	ENST00000285071	NM_144997.5	107	Gtc/Atc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880988	37880988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	184	971	0	ENST00000269571.5:c.2317G>A	p.Val773Met	p.V773M	ENST00000269571		773	Gtg/Atg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288765	15288765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	102	263	1	ENST00000263388.2:c.3974G>A	p.Arg1325His	p.R1325H	ENST00000263388	NM_000435.2	1325	cGc/cAc																																																																															
MLL4	9757	MSKCC	GRCh37	19	36210420	36210420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	209	789	1	ENST00000222270.7:c.413G>A	p.Arg138His	p.R138H	ENST00000222270	NM_014727.1	138	cGc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214871	36214871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	289	1228	12	ENST00000222270.7:c.3302del	p.Pro1101LeufsTer81	p.P1101Lfs*81	ENST00000222270	NM_014727.1	1099	ggC/gg																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082301	16082301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	322	1409	0	ENST00000281043.3:c.115G>T	p.Gly39Cys	p.G39C	ENST00000281043	NM_005378.4	39	Ggc/Tgc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933437	49933438	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	217	906	0	ENST00000296474.3:c.2752dup	p.Leu918ProfsTer21	p.L918Pfs*21	ENST00000296474	NM_002447.2	918	ctg/cCtg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	225	1108	5	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																															
BCL6	604	MSKCC	GRCh37	3	187440292	187440292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	132	625	0	ENST00000232014.4:c.2075G>A	p.Arg692His	p.R692H	ENST00000232014	NM_001130845.1	692	cGc/cAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541459	187541459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	147	602	0	ENST00000441802.2:c.6281C>T	p.Thr2094Ile	p.T2094I	ENST00000441802	NM_005245.3	2094	aCt/aTt																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43748510	43748510	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	162	646	1	ENST00000523873.1:c.464G>T	p.Arg155Leu	p.R155L	ENST00000523873		155	cGc/cTc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157521975	157521975	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144424476		P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	157	655	1	ENST00000346085.5:c.4247G>A	p.Arg1416His	p.R1416H	ENST00000346085	NM_020732.3	1416	cGc/cAc																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38277152	38277152	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	214	1012	1	ENST00000425967.3:c.1276A>G	p.Ile426Val	p.I426V	ENST00000425967	NM_001174067.1	426	Atc/Gtc																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020769	37020769	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	231	994	2	ENST00000358127.4:c.76G>T	p.Val26Phe	p.V26F	ENST00000358127	NM_001280556.1	26	Gtt/Ttt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014696-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			561	691	563	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																															
RB1	5925	MSKCC	GRCh37	13	48955432	48955432	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014696-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			137	543	463	0	ENST00000267163.4:c.1548G>A	p.Trp516Ter	p.W516*	ENST00000267163	NM_000321.2	516	tgG/tgA																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031815	10031815	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0014696-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1340	242	515	2	ENST00000330684.3:c.1007+1G>A		p.X336_splice	ENST00000330684	NM_001134407.1	336																																																																																
CHEK2	11200	MSKCC	GRCh37	22	29090030	29090030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014696-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			35	23	111	7	ENST00000328354.6:c.1451C>T	p.Pro484Leu	p.P484L	ENST00000328354	NM_007194.3	484	cCg/cTg																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778042	27778042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014696-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			596	424	498	0	ENST00000369163.2:c.191G>A	p.Arg64Lys	p.R64K	ENST00000369163	NM_003536.2	64	aGa/aAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	119	279	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061215	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCAGCCGTTCTCGAACATGTT	GCAGCCGTTCTCGAACATGTT	-			P-0014699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	69	384	0	ENST00000250448.2:c.754_774delAACATGTTCGAGAACGGCTGC	p.Asn252_Cys258del	p.N252_C258del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTGC/-																																																																															
CDH1	999	MSKCC	GRCh37	16	68857509	68857510	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0014699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	109	280	0	ENST00000261769.5:c.2145_2146del	p.Gly716AsnfsTer31	p.G716Nfs*31	ENST00000261769	NM_004360.3	715	gGA/g																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508342	106508342	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	55	218	0	ENST00000359195.3:c.336G>C	p.Lys112Asn	p.K112N	ENST00000359195	NM_002649.2	112	aaG/aaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	27	447	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0014727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	64	711	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	33	458	1	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	75	381	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0014737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	96	270	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111467	8111468	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	120	359	0	ENST00000346208.3:c.954dup	p.Asn319GlufsTer33	p.N319Efs*33	ENST00000346208		318	gcg/gcGg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870996	12870996	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	51	280	2	ENST00000228872.4:c.223G>T	p.Glu75Ter	p.E75*	ENST00000228872	NM_004064.3	75	Gag/Tag																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171747	36171757	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	ATCTGCCTTGT	ATCTGCCTTGT	-			P-0014737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	73	223	0	ENST00000300305.3:c.808_818del	p.Thr270ProfsTer326	p.T270Pfs*326	ENST00000300305		270	ACAAGGCAGATc/c																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115903	8115904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0014763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	125	474	0	ENST00000346208.3:c.1251dupC	p.Thr418HisfsTer89	p.T418Hfs*89	ENST00000346208		417	acc/aCcc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396468	396468	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	88	766	0	ENST00000262320.3:c.558G>C	p.Gln186His	p.Q186H	ENST00000262320	NM_003502.3	186	caG/caC																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396575	396575	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	66	616	1	ENST00000262320.3:c.451G>C	p.Asp151His	p.D151H	ENST00000262320	NM_003502.3	151	Gat/Cat																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52678747	52678747	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	54	576	0	ENST00000394830.3:c.872A>G	p.Glu291Gly	p.E291G	ENST00000394830	NM_018313.4	291	gAa/gGa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187527259	187527259	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201982861		P-0014763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	41	521	2	ENST00000441802.2:c.10315G>A	p.Val3439Ile	p.V3439I	ENST00000441802	NM_005245.3	3439	Gtc/Atc																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020754	37020754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	43	634	2	ENST00000358127.4:c.91C>T	p.Arg31Trp	p.R31W	ENST00000358127	NM_001280556.1	31	Cgg/Tgg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416680	121416680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	32	734	0	ENST00000257555.6:c.109C>T	p.Leu37Phe	p.L37F	ENST00000257555		37	Ctc/Ttc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520126	9520126	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	55	387	0	ENST00000353224.5:c.2143C>A	p.Gln715Lys	p.Q715K	ENST00000353224	NM_177990.2	715	Caa/Aaa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131927018	131927018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	97	409	0	ENST00000265335.6:c.1555C>T	p.Arg519Cys	p.R519C	ENST00000265335		519	Cgt/Tgt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8339035	8339035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	37	489	0	ENST00000356435.5:c.5266C>A	p.Gln1756Lys	p.Q1756K	ENST00000356435		1756	Caa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	136	520	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	324	415	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911593	114911593	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	331	519	0	ENST00000543371.1:c.1111G>C	p.Glu371Gln	p.E371Q	ENST00000543371	NM_001198531.1	371	Gag/Cag																																																																															
SDHC	6391	MSKCC	GRCh37	1	161293455	161293455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	196	295	0	ENST00000367975.2:c.72C>G	p.Ile24Met	p.I24M	ENST00000367975	NM_003001.3	24	atC/atG																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739115	40739115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	281	398	0	ENST00000373198.4:c.3169G>A	p.Glu1057Lys	p.E1057K	ENST00000373198	NM_133170.3	1057	Gag/Aag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907092	32907092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	113	316	0	ENST00000380152.3:c.1477C>T	p.Pro493Ser	p.P493S	ENST00000380152		493	Cca/Tca																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244094	41244094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	138	459	0	ENST00000357654.3:c.3454G>A	p.Asp1152Asn	p.D1152N	ENST00000357654	NM_007294.3	1152	Gac/Aac																																																																															
CDC42	998	MSKCC	GRCh37	1	22413244	22413244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	25	37	0	ENST00000344548.3:c.371C>T	p.Ser124Phe	p.S124F	ENST00000344548	NM_001039802.1	124	tCt/tTt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982319	201982319	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1354	154	638	0	ENST00000359651.3:c.698G>C	p.Arg233Pro	p.R233P	ENST00000359651		233	cGt/cCt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982361	201982361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1585	179	766	0	ENST00000359651.3:c.740G>A	p.Arg247Gln	p.R247Q	ENST00000359651		247	cGa/cAa																																																																															
MLL2	8085	MSKCC	GRCh37	12	49420471	49420471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1155	135	470	0	ENST00000301067.7:c.15278C>T	p.Ser5093Phe	p.S5093F	ENST00000301067	NM_003482.3	5093	tCc/tTc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103519096	103519096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	136	431	0	ENST00000355739.4:c.2434G>A	p.Asp812Asn	p.D812N	ENST00000355739	NM_000123.3	812	Gat/Aat																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103519159	103519159	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	106	352	0	ENST00000355739.4:c.2497G>C	p.Glu833Gln	p.E833Q	ENST00000355739	NM_000123.3	833	Gaa/Caa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748206	43748206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	234	510	0	ENST00000382044.4:c.2600C>T	p.Ser867Leu	p.S867L	ENST00000382044	NM_001141980.1	867	tCa/tTa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820641	3820641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1313	437	668	2	ENST00000262367.5:c.2810C>T	p.Pro937Leu	p.P937L	ENST00000262367	NM_004380.2	937	cCg/cTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9927969	9927969	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	106	330	0	ENST00000330684.3:c.1770del	p.Ala593HisfsTer61	p.A593Hfs*61	ENST00000330684	NM_001134407.1	590	aaA/aa																																																																															
NF1	4763	MSKCC	GRCh37	17	29483087	29483087	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	291	443	0	ENST00000358273.4:c.147C>G	p.Tyr49Ter	p.Y49*	ENST00000358273	NM_001042492.2	49	taC/taG																																																																															
STK11	6794	MSKCC	GRCh37	19	1219381	1219381	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	368	593	2	ENST00000326873.7:c.433G>T	p.Glu145Ter	p.E145*	ENST00000326873	NM_000455.4	145	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602869	10602869	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1172	546	747	0	ENST00000171111.5:c.709C>G	p.Leu237Val	p.L237V	ENST00000171111	NM_203500.1	237	Ctg/Gtg																																																																															
BARD1	580	MSKCC	GRCh37	2	215646222	215646222	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	36	194	0	ENST00000260947.4:c.376G>C	p.Asp126His	p.D126H	ENST00000260947	NM_000465.2	126	Gat/Cat																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523357	9523357	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	117	406	0	ENST00000353224.5:c.1880G>T	p.Trp627Leu	p.W627L	ENST00000353224	NM_177990.2	627	tGg/tTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920326	134920326	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	90	351	0	ENST00000398015.3:c.2141G>T	p.Gly714Val	p.G714V	ENST00000398015	NM_004441.4	714	gGg/gTg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185198222	185198222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	161	399	3	ENST00000265026.3:c.2704C>T	p.His902Tyr	p.H902Y	ENST00000265026	NM_004721.4	902	Cac/Tac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332577	153332577	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	101	313	0	ENST00000281708.4:c.379C>T	p.Gln127Ter	p.Q127*	ENST00000281708	NM_033632.3	127	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517903	187517903	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	121	366	0	ENST00000441802.2:c.12791C>G	p.Ser4264Ter	p.S4264*	ENST00000441802	NM_005245.3	4264	tCa/tGa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160720	56160720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	94	325	0	ENST00000399503.3:c.994G>A	p.Asp332Asn	p.D332N	ENST00000399503	NM_005921.1	332	Gac/Aac																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751159	57751159	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	99	242	0	ENST00000274289.3:c.1708A>T	p.Thr570Ser	p.T570S	ENST00000274289	NM_006622.3	570	Acg/Tcg																																																																															
FYN	2534	MSKCC	GRCh37	6	112041017	112041017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	171	257	0	ENST00000368678.4:c.238G>A	p.Gly80Arg	p.G80R	ENST00000368678		80	Gga/Aga																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004922	150004922	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	133	298	0	ENST00000253339.5:c.1303C>G	p.Gln435Glu	p.Q435E	ENST00000253339		435	Cag/Gag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382242	152382242	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	228	324	0	ENST00000206249.3:c.1352T>G	p.Ile451Ser	p.I451S	ENST00000206249	NM_000125.3	451	aTt/aGt																																																																															
BRAF	673	MSKCC	GRCh37	7	140481397	140481397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	109	315	0	ENST00000288602.6:c.1411G>T	p.Val471Phe	p.V471F	ENST00000288602	NM_004333.4	471	Gtc/Ttc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139815600	139815600	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	285	522	0	ENST00000247668.2:c.1071G>T	p.Lys357Asn	p.K357N	ENST00000247668	NM_021138.3	357	aaG/aaT																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728625	190728639	+	frameshift_variant	Frame_Shift_Del	DEL	ATTATCTAATCAACC	ATTATCTAATCAACC	G			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	145	423	0	ENST00000441310.2:c.2013_2027delinsG	p.Leu672LysfsTer3	p.L672Kfs*3	ENST00000441310	NM_000534.4	671	tcATTATCTAATCAACCa/tcGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0014821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	411	512	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458147	120458147	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1325403451		P-0014821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	371	493	0	ENST00000256646.2:c.7198C>T	p.Arg2400Ter	p.R2400*	ENST00000256646	NM_024408.3	2400	Cga/Tga																																																																															
RB1	5925	MSKCC	GRCh37	13	48881509	48881509	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	240	284	0	ENST00000267163.4:c.232del	p.Trp78GlyfsTer33	p.W78Gfs*33	ENST00000267163	NM_000321.2	77	acT/ac																																																																															
SMO	6608	MSKCC	GRCh37	7	128843302	128843302	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1599	500	681	0	ENST00000249373.3:c.409G>C	p.Asp137His	p.D137H	ENST00000249373	NM_005631.4	137	Gac/Cac																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317451	1317451	+	downstream_gene_variant	3'Flank	SNP	T	T	C			P-0014821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1490	494	568	0				ENST00000381566																																																																																		
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	64	393	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
MLL3	58508	MSKCC	GRCh37	7	151900060	151900060	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	56	283	0	ENST00000262189.6:c.4051delA	p.Arg1351GlyfsTer23	p.R1351Gfs*23	ENST00000262189	NM_170606.2	1351	Agg/gg																																																																															
MLL3	58508	MSKCC	GRCh37	7	151845959	151845959	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	72	468	2	ENST00000262189.6:c.13053delA	p.Lys4351AsnfsTer5	p.K4351Nfs*5	ENST00000262189	NM_170606.2	4351	aaA/aa																																																																															
RB1	5925	MSKCC	GRCh37	13	48941629	48941629	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	18	122	0	ENST00000267163.4:c.940-1G>T		p.X314_splice	ENST00000267163	NM_000321.2	314																																																																																
CSDE1	7812	MSKCC	GRCh37	1	115267956	115267956	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	67	383	0	ENST00000438362.2:c.1779-2A>G		p.X593_splice	ENST00000438362	NM_001242891.1	593																																																																																
CSDE1	7812	MSKCC	GRCh37	1	115268841	115268841	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	175	393	0	ENST00000438362.2:c.1769del	p.Phe590SerfsTer36	p.F590Sfs*36	ENST00000438362	NM_001242891.1	590	tTc/tc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56494960	56494960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	72	422	0	ENST00000267101.3:c.3317C>T	p.Ala1106Val	p.A1106V	ENST00000267101	NM_001982.3	1106	gCt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579533	7579534	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTCAA			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	236	643	0	ENST00000269305.4:c.149_153dup	p.Gln52LeufsTer73	p.Q52Lfs*73	ENST00000269305	NM_001126112.2	51	-/TTGAA																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534449	63534449	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	91	581	0	ENST00000307078.5:c.1072C>A	p.Leu358Met	p.L358M	ENST00000307078	NM_004655.3	358	Ctg/Atg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18958620	18958620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	75	565	3	ENST00000262803.5:c.439G>A	p.Gly147Arg	p.G147R	ENST00000262803	NM_002911.3	147	Gga/Aga																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47600641	47600641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	76	486	0	ENST00000263735.4:c.116T>C	p.Phe39Ser	p.F39S	ENST00000263735	NM_002354.2	39	tTt/tCt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212543874	212543874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	114	457	0	ENST00000342788.4:c.1525A>G	p.Ser509Gly	p.S509G	ENST00000342788	NM_005235.2	509	Agt/Ggt																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52582243	52582243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	58	153	0	ENST00000394830.3:c.4585C>T	p.Arg1529Cys	p.R1529C	ENST00000394830	NM_018313.4	1529	Cgc/Tgc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294998	1294998	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	24	81	1	ENST00000310581.5:c.107G>A	p.Trp36Ter	p.W36*	ENST00000310581	NM_198253.2	36	tGg/tAg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876394	35876394	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1264	131	500	0	ENST00000303115.3:c.1186A>G	p.Asn396Asp	p.N396D	ENST00000303115	NM_002185.3	396	Aat/Gat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177930	56177930	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	131	428	0	ENST00000399503.3:c.2903A>G	p.Asn968Ser	p.N968S	ENST00000399503	NM_005921.1	968	aAc/aGc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053239	180053239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	58	602	1	ENST00000261937.6:c.1130G>A	p.Gly377Glu	p.G377E	ENST00000261937	NM_182925.4	377	gGg/gAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76855024	76855024	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	52	406	0	ENST00000373344.5:c.5812A>G	p.Lys1938Glu	p.K1938E	ENST00000373344	NM_000489.3	1938	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0014841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	356	785	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	121	603	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	118	715	1	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175352	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0014858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	158	346	0	ENST00000257430.4:c.4062_4063del	p.Ser1355PhefsTer19	p.S1355Ffs*19	ENST00000257430	NM_000038.5	1354	TTt/t																																																																															
MTOR	2475	MSKCC	GRCh37	1	11259397	11259397	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	111	636	0	ENST00000361445.4:c.4171C>G	p.Arg1391Gly	p.R1391G	ENST00000361445	NM_004958.3	1391	Cga/Gga																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246078928	246078928	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	193	538	0	ENST00000388985.4:c.717C>G	p.Tyr239Ter	p.Y239*	ENST00000388985		239	taC/taG																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67459114	67459114	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0014858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	371	805	0	ENST00000327367.4:c.533-3C>G		p.X178_splice	ENST00000327367	NM_005902.3	178																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31022732	31022733	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAGATGG			P-0014858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	117	717	0	ENST00000375687.4:c.2218_2225dup	p.Leu743GlnfsTer4	p.L743Qfs*4	ENST00000375687	NM_015338.5	739	-/ACAGATGG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	519	603	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0014877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	275	630	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	169	399	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68857317	68857317	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	138	394	0	ENST00000261769.5:c.1955delT	p.Leu652Ter	p.L652*	ENST00000261769	NM_004360.3	651	aTt/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0014945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	189	664	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	136	536	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245617	41245617	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1136	71	717	0	ENST00000357654.3:c.1931G>T	p.Cys644Phe	p.C644F	ENST00000357654	NM_007294.3	644	tGt/tTt																																																																															
APC	324	MSKCC	GRCh37	5	112174922	112174923	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTCT			P-0014945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	100	346	0	ENST00000257430.4:c.3633_3637dup	p.Ser1213CysfsTer54	p.S1213Cfs*54	ENST00000257430	NM_000038.5	1211	atg/aTGTCTtg																																																																															
APC	324	MSKCC	GRCh37	5	112176021	112176021	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	95	396	0	ENST00000257430.4:c.4731delA	p.Glu1577AspfsTer73	p.E1577Dfs*73	ENST00000257430	NM_000038.5	1577	gAa/ga																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111119	193111119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	23	494	0	ENST00000367435.3:c.652G>A	p.Val218Ile	p.V218I	ENST00000367435	NM_024529.4	218	Gta/Ata																																																																															
TP53	7157	MSKCC	GRCh37	17	7572981	7572981	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	22	522	0	ENST00000269305.4:c.1128del	p.Thr377ProfsTer45	p.T377Pfs*45	ENST00000269305	NM_001126112.2	376	tcT/tc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285198	15285198	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	35	926	0	ENST00000263388.2:c.4417A>C	p.Lys1473Gln	p.K1473Q	ENST00000263388	NM_000435.2	1473	Aag/Cag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117632219	117632219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	17	756	0	ENST00000368508.3:c.6197G>A	p.Gly2066Asp	p.G2066D	ENST00000368508	NM_002944.2	2066	gGc/gAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	69	412	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182641	38182641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	37	291	1	ENST00000396334.3:c.794T>C	p.Leu265Pro	p.L265P	ENST00000396334	NM_002468.4	265	cTg/cCg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061463	38061463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	46	462	0	ENST00000250448.2:c.526A>G	p.Ile176Val	p.I176V	ENST00000250448	NM_004496.3	176	Atc/Gtc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248150	110248150	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	34	410	0	ENST00000374672.4:c.1322A>G	p.Asp441Gly	p.D441G	ENST00000374672	NM_004235.4	441	gAt/gGt																																																																															
MLL2	8085	MSKCC	GRCh37	12	49446493	49446493	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0014998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	43	334	0	ENST00000301067.7:c.1113-1G>A		p.X371_splice	ENST00000301067	NM_003482.3	371																																																																																
CDH1	999	MSKCC	GRCh37	16	68847285	68847285	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	73	581	1	ENST00000261769.5:c.1207del	p.Ala403ProfsTer14	p.A403Pfs*14	ENST00000261769	NM_004360.3	403	Gcc/cc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271806	15271807	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0014998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	50	690	1	ENST00000263388.2:c.6632dup	p.Tyr2211Ter	p.Y2211*	ENST00000263388	NM_000435.2	2211	tac/taAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0015006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	281	827	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs926053251		P-0015006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	110	790	1	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0015006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	66	299	1	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																															
MLL	4297	MSKCC	GRCh37	11	118354910	118354910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	224	524	0	ENST00000534358.1:c.4099C>T	p.Pro1367Ser	p.P1367S	ENST00000534358	NM_005933.3	1367	Ccg/Tcg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900384	3900384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	117	714	3	ENST00000262367.5:c.712G>A	p.Val238Met	p.V238M	ENST00000262367	NM_004380.2	238	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578498	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGGGTGTGGAATCAACCCACAGC	CGGGGGTGTGGAATCAACCCACAGC	GGGGG			P-0015006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	170	1148	5	ENST00000269305.4:c.432_456delinsCCCCC	p.Gln144HisfsTer30	p.Q144Hfs*30	ENST00000269305	NM_001126112.2	144	caGCTGTGGGTTGATTCCACACCCCCG/caCCCCC																																																																															
APC	324	MSKCC	GRCh37	5	112173283	112173284	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0015006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	69	271	0	ENST00000257430.4:c.1993_1994delTT	p.Leu665IlefsTer8	p.L665Ifs*8	ENST00000257430	NM_000038.5	664	acTTta/acta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578460	7578461	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	G			P-0015006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	135	933	3	ENST00000269305.4:c.469_470delinsC	p.Val157ProfsTer13	p.V157Pfs*13	ENST00000269305	NM_001126112.2	157	GTc/Cc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	244	647	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50909695	50909695	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	57	923	0	ENST00000440232.2:c.1415A>G	p.Tyr472Cys	p.Y472C	ENST00000440232	NM_002691.3	472	tAc/tGc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47158173	47158173	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	42	653	0	ENST00000409792.3:c.4526G>C	p.Arg1509Thr	p.R1509T	ENST00000409792	NM_014159.6	1509	aGa/aCa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38962421	38962421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	50	397	0	ENST00000357387.3:c.1711C>T	p.His571Tyr	p.H571Y	ENST00000357387	NM_152756.3	571	Cac/Tac																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522053	157522053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	30	465	0	ENST00000346085.5:c.4325G>A	p.Gly1442Glu	p.G1442E	ENST00000346085	NM_020732.3	1442	gGa/gAa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0015049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	253	703	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206664150	206664150	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0015049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	144	567	0	ENST00000367120.3:c.1694-2A>G		p.X565_splice	ENST00000367120	NM_014002.3	565																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178916926	178916931	+	inframe_deletion	In_Frame_Del	DEL	GTAGGC	GTAGGC	-			P-0015049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	393	527	0	ENST00000263967.3:c.313_318del	p.Val105_Gly106del	p.V105_G106del	ENST00000263967	NM_006218.2	105	GTAGGC/-																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0015052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	213	596	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	116	548	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106865	27106871	+	frameshift_variant	Frame_Shift_Del	DEL	AGAACCC	AGAACCC	-			P-0015052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	230	479	0	ENST00000324856.7:c.6476_6482del	p.Lys2159ArgfsTer39	p.K2159Rfs*39	ENST00000324856	NM_006015.4	2159	aAGAACCCg/ag																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46609732	46609732	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	226	493	0	ENST00000263734.3:c.2456T>C	p.Val819Ala	p.V819A	ENST00000263734	NM_001430.4	819	gTg/gCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	23	505	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100368	27100368	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	45	599	0	ENST00000324856.7:c.4081delA	p.Met1361CysfsTer120	p.M1361Cfs*120	ENST00000324856	NM_006015.4	1360	acA/ac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610637	10610637	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016518-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			544	99	783	0	ENST00000171111.5:c.73G>C	p.Glu25Gln	p.E25Q	ENST00000171111	NM_203500.1	25	Gag/Cag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692794	89692794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016518-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	86	496	0	ENST00000371953.3:c.278A>G	p.His93Arg	p.H93R	ENST00000371953	NM_000314.4	93	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016518-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			488	132	794	0	ENST00000269305.4:c.524del	p.Arg175ProfsTer72	p.R175Pfs*72	ENST00000269305	NM_001126112.2	175	cGc/cc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64128940	64128940	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0016518-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			587	119	759	2	ENST00000334205.4:c.571-1G>A		p.X191_splice	ENST00000334205	NM_003942.2	191																																																																																
IRS2	8660	MSKCC	GRCh37	13	110434602	110434602	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016518-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			468	132	773	1	ENST00000375856.3:c.3799C>T	p.Gln1267Ter	p.Q1267*	ENST00000375856	NM_003749.2	1267	Cag/Tag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748196	43748196	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016518-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			675	106	802	0	ENST00000382044.4:c.2610A>T	p.Glu870Asp	p.E870D	ENST00000382044	NM_001141980.1	870	gaA/gaT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610601	10610601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016518-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			639	113	869	1	ENST00000171111.5:c.109G>A	p.Glu37Lys	p.E37K	ENST00000171111	NM_203500.1	37	Gag/Aag																																																																															
ATR	545	MSKCC	GRCh37	3	142272106	142272106	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016518-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			664	126	628	0	ENST00000350721.4:c.2768A>G	p.Gln923Arg	p.Q923R	ENST00000350721	NM_001184.3	923	cAa/cGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178947876	178947876	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016518-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			375	454	532	1	ENST00000263967.3:c.2751C>G	p.His917Gln	p.H917Q	ENST00000263967	NM_006218.2	917	caC/caG																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153271269	153271270	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0016518-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			224	64	365	0	ENST00000281708.4:c.507_508dup	p.Arg170LysfsTer70	p.R170Kfs*70	ENST00000281708	NM_033632.3	170	aga/aAAga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21968233	21968233	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016518-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	77	555	0	ENST00000304494.5:c.466delG	p.Asp156IlefsTer37	p.D156Ifs*37	ENST00000304494	NM_000077.4	156	Gat/at																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424061	49424061	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0020439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	490	1249	0	ENST00000301067.7:c.13999+2T>A		p.X4667_splice	ENST00000301067	NM_003482.3	4667																																																																																
TP53	7157	MSKCC	GRCh37	17	7578192	7578200	+	inframe_deletion	In_Frame_Del	DEL	GGGCACCAC	GGGCACCAC	-			P-0020439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	422	1018	0	ENST00000269305.4:c.649_657del	p.Val217_Pro219del	p.V217_P219del	ENST00000269305	NM_001126112.2	217	GTGGTGCCC/-																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588131	67588131	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	60	579	0	ENST00000274335.5:c.961G>T	p.Gly321Cys	p.G321C	ENST00000274335		321	Ggt/Tgt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860146	151860146	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	82	672	1	ENST00000262189.6:c.10516G>T	p.Glu3506Ter	p.E3506*	ENST00000262189	NM_170606.2	3506	Gag/Tag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929603	44929603	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0020439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	112	433	0	ENST00000377967.4:c.2702+1G>T		p.X901_splice	ENST00000377967	NM_021140.2	901																																																																																
PTEN	5728	MSKCC	GRCh37	10	89711910	89711910	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0020452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	149	621	0	ENST00000371953.3:c.528T>G	p.Tyr176Ter	p.Y176*	ENST00000371953	NM_000314.4	176	taT/taG																																																																															
CDH1	999	MSKCC	GRCh37	16	68849471	68849471	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	187	668	0	ENST00000261769.5:c.1374del	p.Asn458LysfsTer23	p.N458Kfs*23	ENST00000261769	NM_004360.3	458	aaT/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	618	787	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	83	267	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
SDHA	6389	MSKCC	GRCh37	5	251554	251554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1268	192	672	0	ENST00000264932.6:c.1765C>T	p.Arg589Trp	p.R589W	ENST00000264932	NM_004168.2	589	Cgg/Tgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602328	10602328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	702	843	3	ENST00000171111.5:c.1250G>T	p.Gly417Val	p.G417V	ENST00000171111	NM_203500.1	417	gGg/gTg																																																																															
B2M	567	MSKCC	GRCh37	15	45007768	45007768	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	263	465	0	ENST00000558401.1:c.215C>G	p.Ser72Ter	p.S72*	ENST00000558401	NM_004048.2	72	tCa/tGa																																																																															
BRAF	673	MSKCC	GRCh37	7	140439656	140439656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	97	387	0	ENST00000288602.6:c.2083G>C	p.Glu695Gln	p.E695Q	ENST00000288602	NM_004333.4	695	Gag/Cag																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933742	36933742	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	576	780	0	ENST00000361632.4:c.1657G>T	p.Glu553Ter	p.E553*	ENST00000361632		553	Gag/Tag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740116	162740116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	116	474	0	ENST00000367921.3:c.1318G>A	p.Glu440Lys	p.E440K	ENST00000367921	NM_006182.2	440	Gaa/Aaa																																																																															
FH	2271	MSKCC	GRCh37	1	241663871	241663871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	111	446	0	ENST00000366560.3:c.1256C>T	p.Ser419Leu	p.S419L	ENST00000366560	NM_000143.3	419	tCa/tTa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448360	49448360	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	47	679	0	ENST00000301067.7:c.351G>C	p.Gln117His	p.Q117H	ENST00000301067	NM_003482.3	117	caG/caC																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112940047	112940047	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	210	845	0	ENST00000351677.2:c.1699C>G	p.Pro567Ala	p.P567A	ENST00000351677	NM_002834.3	567	Cca/Gca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32893285	32893285	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	75	540	1	ENST00000380152.3:c.139G>T	p.Ala47Ser	p.A47S	ENST00000380152		47	Gca/Tca																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435067	110435067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	290	861	0	ENST00000375856.3:c.3334G>A	p.Glu1112Lys	p.E1112K	ENST00000375856	NM_003749.2	1112	Gag/Aag																																																																															
B2M	567	MSKCC	GRCh37	15	45007803	45007803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	32	489	0	ENST00000558401.1:c.250C>T	p.Leu84Phe	p.L84F	ENST00000558401	NM_004048.2	84	Ctc/Ttc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788590	3788590	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	172	534	0	ENST00000262367.5:c.4364T>C	p.Ile1455Thr	p.I1455T	ENST00000262367	NM_004380.2	1455	aTt/aCt																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825599	50825599	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	67	436	0	ENST00000398568.2:c.2230G>A	p.Glu744Lys	p.E744K	ENST00000398568	NM_001042412.1	744	Gag/Aag																																																																															
CYLD	1540	MSKCC	GRCh37	16	50827538	50827538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	130	608	0	ENST00000398568.2:c.2423G>A	p.Gly808Glu	p.G808E	ENST00000398568	NM_001042412.1	808	gGa/gAa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15950282	15950282	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	68	752	0	ENST00000268712.3:c.6662G>C	p.Gly2221Ala	p.G2221A	ENST00000268712	NM_006311.3	2221	gGa/gCa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15950313	15950313	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	84	788	0	ENST00000268712.3:c.6631G>C	p.Glu2211Gln	p.E2211Q	ENST00000268712	NM_006311.3	2211	Gag/Cag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15995257	15995257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	141	598	0	ENST00000268712.3:c.2936G>A	p.Arg979Lys	p.R979K	ENST00000268712	NM_006311.3	979	aGa/aAa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16041478	16041478	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	97	354	0	ENST00000268712.3:c.1401G>C	p.Glu467Asp	p.E467D	ENST00000268712	NM_006311.3	467	gaG/gaC																																																																															
BRCA1	672	MSKCC	GRCh37	17	41228545	41228545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	165	748	0	ENST00000357654.3:c.4444G>A	p.Asp1482Asn	p.D1482N	ENST00000357654	NM_007294.3	1482	Gat/Aat																																																																															
SPOP	8405	MSKCC	GRCh37	17	47699427	47699427	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	90	354	0	ENST00000347630.2:c.81C>G	p.Ile27Met	p.I27M	ENST00000347630	NM_001007230.1	27	atC/atG																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733140	74733140	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	75	639	0	ENST00000359995.5:c.103G>C	p.Glu35Gln	p.E35Q	ENST00000359995	NM_001195427.1	35	Gag/Cag																																																																															
INSR	3643	MSKCC	GRCh37	19	7152923	7152923	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	129	520	0	ENST00000302850.5:c.2045C>G	p.Ser682Trp	p.S682W	ENST00000302850	NM_000208.2	682	tCg/tGg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905960	50905960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	782	888	1	ENST00000440232.2:c.932G>T	p.Arg311Leu	p.R311L	ENST00000440232	NM_002691.3	311	cGc/cTc																																																																															
MSH2	4436	MSKCC	GRCh37	2	47707966	47707966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	109	481	0	ENST00000233146.2:c.2590G>A	p.Asp864Asn	p.D864N	ENST00000233146	NM_000251.2	864	Gat/Aat																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128051181	128051181	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	248	663	2	ENST00000285398.2:c.142G>C	p.Glu48Gln	p.E48Q	ENST00000285398	NM_000122.1	48	Gag/Cag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096202	178096202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	153	453	0	ENST00000397062.3:c.1129G>A	p.Glu377Lys	p.E377K	ENST00000397062	NM_006164.4	377	Gaa/Aaa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178097986	178097986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	115	464	1	ENST00000397062.3:c.394G>A	p.Asp132Asn	p.D132N	ENST00000397062	NM_006164.4	132	Gac/Aac																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198299715	198299715	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	104	464	0	ENST00000335508.6:c.9G>T	p.Lys3Asn	p.K3N	ENST00000335508	NM_012433.2	3	aaG/aaT																																																																															
IDH1	3417	MSKCC	GRCh37	2	209108166	209108166	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	230	389	0	ENST00000345146.2:c.683A>G	p.Gln228Arg	p.Q228R	ENST00000345146	NM_005896.2	228	cAg/cGg																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62321686	62321686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	289	769	0	ENST00000508582.2:c.2377C>T	p.Arg793Cys	p.R793C	ENST00000508582		793	Cgt/Tgt																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458338	12458338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	200	727	0	ENST00000287820.6:c.955G>A	p.Glu319Lys	p.E319K	ENST00000287820	NM_015869.4	319	Gag/Aag																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940706	49940706	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3733136		P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	155	474	0	ENST00000296474.3:c.337G>A	p.Gly113Ser	p.G113S	ENST00000296474	NM_002447.2	113	Ggc/Agc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651527	52651527	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	35	553	2	ENST00000394830.3:c.1569G>C	p.Met523Ile	p.M523I	ENST00000394830	NM_018313.4	523	atG/atC																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52668722	52668722	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	36	609	0	ENST00000394830.3:c.1197C>G	p.Asn399Lys	p.N399K	ENST00000394830	NM_018313.4	399	aaC/aaG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928074	178928074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	54	650	0	ENST00000263967.3:c.1352G>C	p.Gly451Ala	p.G451A	ENST00000263967	NM_006218.2	451	gGa/gCa																																																																															
TP63	8626	MSKCC	GRCh37	3	189586400	189586400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	161	312	0	ENST00000264731.3:c.1024G>T	p.Ala342Ser	p.A342S	ENST00000264731	NM_003722.4	342	Gcc/Tcc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213869	66213869	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	39	636	0	ENST00000273854.3:c.2561A>T	p.Lys854Met	p.K854M	ENST00000273854	NM_004439.5	854	aAg/aTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106157752	106157752	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	57	274	0	ENST00000380013.4:c.2653G>T	p.Glu885Ter	p.E885*	ENST00000380013	NM_001127208.2	885	Gaa/Taa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959103	2959103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	116	760	1	ENST00000396946.4:c.2413G>A	p.Asp805Asn	p.D805N	ENST00000396946	NM_032415.4	805	Gac/Aac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8449736	8449736	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	132	596	2	ENST00000356435.5:c.3977T>C	p.Phe1326Ser	p.F1326S	ENST00000356435		1326	tTt/tCt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486135	8486135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	178	504	0	ENST00000356435.5:c.2682G>T	p.Arg894Ser	p.R894S	ENST00000356435		894	agG/agT																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932333	39932333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	275	868	4	ENST00000378444.4:c.2266G>A	p.Glu756Lys	p.E756K	ENST00000378444	NM_001123385.1	756	Gag/Aag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045943	47045943	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	228	806	0	ENST00000329236.7:c.2504C>G	p.Ser835Cys	p.S835C	ENST00000329236	NM_001204466.1	835	tCc/tGc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118371751	118371751	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	148	590	0	ENST00000534358.1:c.6208T>C	p.Tyr2070His	p.Y2070H	ENST00000534358	NM_005933.3	2070	Tat/Cat																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436805	110436805	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	344	1336	0	ENST00000375856.3:c.1596C>G	p.Asp532Glu	p.D532E	ENST00000375856	NM_003749.2	532	gaC/gaG																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272209	15272209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	243	961	0	ENST00000263388.2:c.6230C>T	p.Pro2077Leu	p.P2077L	ENST00000263388	NM_000435.2	2077	cCc/cTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949753	151949765	+	frameshift_variant	Frame_Shift_Del	DEL	CCACTGAGAACTA	CCACTGAGAACTA	-			P-0020482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	196	893	0	ENST00000262189.6:c.1335_1347del	p.Ser446ThrfsTer5	p.S446Tfs*5	ENST00000262189	NM_170606.2	445	tcTAGTTCTCAGTGG/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	227	1085	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0020485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	169	1163	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030213	180030213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	118	1096	3	ENST00000261937.6:c.4071C>A	p.Phe1357Leu	p.F1357L	ENST00000261937	NM_182925.4	1357	ttC/ttA																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332607	153332607	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	98	875	0	ENST00000281708.4:c.349G>T	p.Glu117Ter	p.E117*	ENST00000281708	NM_033632.3	117	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578476	7578476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	532	1738	2	ENST00000269305.4:c.454C>T	p.Pro152Ser	p.P152S	ENST00000269305	NM_001126112.2	152	Ccg/Tcg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354425	354425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	295	1363	2	ENST00000262320.3:c.1133C>T	p.Pro378Leu	p.P378L	ENST00000262320	NM_003502.3	378	cCg/cTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949207	71949207	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	409	1750	0	ENST00000298229.2:c.3674T>C	p.Leu1225Pro	p.L1225P	ENST00000298229	NM_001567.3	1225	cTg/cCg																																																																															
CDH1	999	MSKCC	GRCh37	16	68863698	68863698	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0020503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	158	621	1	ENST00000261769.5:c.2437G>T	p.Glu813Ter	p.E813*	ENST00000261769	NM_004360.3	813	Gaa/Taa																																																																															
STK11	6794	MSKCC	GRCh37	19	1218467	1218467	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	331	1287	0	ENST00000326873.7:c.343del	p.Asp115MetfsTer14	p.D115Mfs*14	ENST00000326873	NM_000455.4	114	gtG/gt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610113	10610113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	373	1328	2	ENST00000171111.5:c.597G>T	p.Leu199Phe	p.L199F	ENST00000171111	NM_203500.1	199	ttG/ttT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524492	187524492	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	212	1191	1	ENST00000441802.2:c.11188A>T	p.Ile3730Leu	p.I3730L	ENST00000441802	NM_005245.3	3730	Ata/Tta																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149514495	149514495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	294	1176	0	ENST00000261799.4:c.449G>A	p.Arg150Gln	p.R150Q	ENST00000261799	NM_002609.3	150	cGa/cAa																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946134	13946134	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	257	1092	0	ENST00000405192.2:c.962T>C	p.Leu321Pro	p.L321P	ENST00000405192	NM_001163147.1	321	cTt/cCt																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0020513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	1121	1766	0	ENST00000397752.3:c.3028G>T	p.Asp1010Tyr	p.D1010Y	ENST00000397752	NM_000245.2	1010	Gat/Tat																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111907691	111907693	+	missense_variant	Missense_Mutation	ONP	TGG	TGG	CTT			P-0020513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	287	650	0	ENST00000393256.3:c.465_467delinsCTT	p.Gly156Leu	p.G156L	ENST00000393256	NM_006538.4	155	atTGGa/atCTTa																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724599	112724599	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	108	977	0	ENST00000369452.4:c.483del	p.Leu161PhefsTer8	p.L161Ffs*8	ENST00000369452	NM_007373.3	161	ttG/tt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467706	66467706	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	201	753	0	ENST00000273854.3:c.563T>A	p.Leu188His	p.L188H	ENST00000273854	NM_004439.5	188	cTt/cAt																																																																															
TET2	54790	MSKCC	GRCh37	4	106155548	106155549	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	235	705	0	ENST00000380013.4:c.450dup	p.Val151CysfsTer11	p.V151Cfs*11	ENST00000380013	NM_001127208.2	150	tct/tcTt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675414	30675414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	113	852	0	ENST00000376406.3:c.2942C>T	p.Ser981Leu	p.S981L	ENST00000376406	NM_014641.2	981	tCa/tTa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040962	47040963	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0020513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	442	1576	0	ENST00000329236.7:c.1261_1262del	p.Ala421ProfsTer18	p.A421Pfs*18	ENST00000329236	NM_001204466.1	420	CGc/c																																																																															
NF1	4763	MSKCC	GRCh37	17	29661946	29661946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	126	1038	4	ENST00000358273.4:c.5903G>A	p.Arg1968Gln	p.R1968Q	ENST00000358273	NM_001042492.2	1968	cGa/cAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713365	40713365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	58	1308	0	ENST00000373198.4:c.4150G>A	p.Glu1384Lys	p.E1384K	ENST00000373198	NM_133170.3	1384	Gag/Aag																																																																															
ELF3	1999	MSKCC	GRCh37	1	201980418	201980418	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	47	1161	0	ENST00000359651.3:c.154G>C	p.Glu52Gln	p.E52Q	ENST00000359651		52	Gag/Cag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231391	46231391	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	95	872	1	ENST00000334344.6:c.1231G>C	p.Asp411His	p.D411H	ENST00000334344	NM_152641.2	411	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577548	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	139	1258	2	ENST00000269305.4:c.733_734delinsTT	p.Gly245Phe	p.G245F	ENST00000269305	NM_001126112.2	245	GGc/TTc																																																																															
GNA11	2767	MSKCC	GRCh37	19	3094731	3094731	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	41	934	1	ENST00000078429.4:c.82C>T	p.Gln28Ter	p.Q28*	ENST00000078429	NM_002067.2	28	Cag/Tag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222841	5222841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	52	940	1	ENST00000357368.4:c.2962G>A	p.Glu988Lys	p.E988K	ENST00000357368	NM_002850.3	988	Gag/Aag																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085904	16085904	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	114	870	1	ENST00000281043.3:c.1080G>T	p.Lys360Asn	p.K360N	ENST00000281043	NM_005378.4	360	aaG/aaT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40710649	40710649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	39	917	0	ENST00000373198.4:c.4202G>A	p.Gly1401Glu	p.G1401E	ENST00000373198	NM_133170.3	1401	gGa/gAa																																																																															
EP300	2033	MSKCC	GRCh37	22	41562602	41562602	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	50	809	0	ENST00000263253.7:c.3807-1G>C		p.X1269_splice	ENST00000263253	NM_001429.3	1269																																																																																
PPARG	5468	MSKCC	GRCh37	3	12421280	12421280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	49	1327	1	ENST00000287820.6:c.160G>A	p.Glu54Lys	p.E54K	ENST00000287820	NM_015869.4	54	Gaa/Aaa																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1920070	1920070	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	143	1133	0	ENST00000382891.5:c.1130C>G	p.Ser377Ter	p.S377*	ENST00000382891	NM_133335.3	377	tCa/tGa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131951748	131951748	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	56	579	0	ENST00000265335.6:c.3090A>T	p.Glu1030Asp	p.E1030D	ENST00000265335		1030	gaA/gaT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508120	106508120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	98	379	0	ENST00000359195.3:c.114C>G	p.Ile38Met	p.I38M	ENST00000359195	NM_002649.2	38	atC/atG																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545592	106545592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	199	976	1	ENST00000359195.3:c.3069C>A	p.His1023Gln	p.H1023Q	ENST00000359195	NM_002649.2	1023	caC/caA																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38273504	38273504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	542	1363	3	ENST00000425967.3:c.1831G>T	p.Gly611Trp	p.G611W	ENST00000425967	NM_001174067.1	611	Ggg/Tgg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370789	55370789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	146	795	0	ENST00000297316.4:c.91C>A	p.Pro31Thr	p.P31T	ENST00000297316	NM_022454.3	31	Ccc/Acc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981456	70981456	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1250	145	1743	0	ENST00000276594.2:c.640G>C	p.Glu214Gln	p.E214Q	ENST00000276594	NM_024504.3	214	Gag/Cag																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87563482	87563482	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	146	1128	0	ENST00000277120.3:c.1870G>T	p.Val624Leu	p.V624L	ENST00000277120		624	Gtg/Ttg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123164908	123164908	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	78	284	0	ENST00000218089.9:c.221A>G	p.His74Arg	p.H74R	ENST00000218089	NM_001042749.1	74	cAc/cGc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0020566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	563	825	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0020566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	358	876	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56167804	56167805	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0020566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	666	695	0	ENST00000399503.3:c.1370_1371delCA	p.Thr457SerfsTer3	p.T457Sfs*3	ENST00000399503	NM_005921.1	457	ACa/a																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0020566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	294	901	2	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0020627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	296	737	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																															
CBFB	865	MSKCC	GRCh37	16	67100631	67100631	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	230	888	1	ENST00000412916.2:c.329G>A	p.Trp110Ter	p.W110*	ENST00000412916		110	tGg/tAg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11168316	11168316	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	136	763	0	ENST00000361445.4:c.7556T>C	p.Leu2519Ser	p.L2519S	ENST00000361445	NM_004958.3	2519	tTg/tCg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	402009	402009	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	126	733	0	ENST00000399788.2:c.4782G>C	p.Lys1594Asn	p.K1594N	ENST00000399788	NM_001042603.1	1594	aaG/aaC																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112910811	112910812	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0020627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	79	706	2	ENST00000351677.2:c.823_824del	p.Asn275GlnfsTer3	p.N275Qfs*3	ENST00000351677	NM_002834.3	274	AAa/a																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251128	99251129	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	288	828	1	ENST00000268035.6:c.437dup	p.Asn146LysfsTer3	p.N146Kfs*3	ENST00000268035	NM_000875.3	144	-/A																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15943786	15943786	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	156	612	2	ENST00000268712.3:c.6702del	p.Ile2235SerfsTer58	p.I2235Sfs*58	ENST00000268712	NM_006311.3	2234	gaG/ga																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56811509	56811509	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	111	828	0	ENST00000337432.4:c.1057T>A	p.Ser353Thr	p.S353T	ENST00000337432	NM_058216.2	353	Tct/Act																																																																															
BRD4	23476	MSKCC	GRCh37	19	15364979	15364979	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	158	733	0	ENST00000263377.2:c.2142C>G	p.Ser714Arg	p.S714R	ENST00000263377	NM_058243.2	714	agC/agG																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46271052	46271052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	137	697	0	ENST00000371998.3:c.3176C>T	p.Thr1059Ile	p.T1059I	ENST00000371998		1059	aCt/aTt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177677	56177680	+	frameshift_variant	Frame_Shift_Del	DEL	TTCT	TTCT	-			P-0020627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	89	512	1	ENST00000399503.3:c.2651_2654del	p.Phe884CysfsTer24	p.F884Cfs*24	ENST00000399503	NM_005921.1	884	TTCTtg/tg																																																																															
NPM1	4869	MSKCC	GRCh37	5	170817088	170817088	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	47	754	0	ENST00000296930.5:c.92T>G	p.Phe31Cys	p.F31C	ENST00000296930	NM_002520.6	31	tTt/tGt																																																																															
PMS2	5395	MSKCC	GRCh37	7	6042243	6042244	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGCA			P-0020627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	146	701	0	ENST00000265849.7:c.373_377dup	p.Ser128ThrfsTer10	p.S128Tfs*10	ENST00000265849	NM_000535.5	126	cac/caTGCCAc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187233	38188255	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCGGTTTTGGAGGCAACACTCTTTTTTGCTTGGGATAAAGCCTCTTCAGGCTGTTTATCAATGTAAATAAAAGTATACTGTTCTATTCTTTCTTCTCGAGTCATTTTCAATGCTTTCTCTGCATGGGCAATGCCAATATCCCACTGAGCACGTTCTCTCTGAGGTCGGGGTTTCCGAATCTTTAAAAAAGATAGAGATTATCAGACATGCTTTACTCTAATAGGTACATTAAAATTGATATGTATTTCCCATGTGATCCTGTTATCTTTTCAGGTCTACATAAATATCTTCAGGTTCTTTGGTCAAACAAGTGGAATGTTCTATCTCCATAATTCTGATAAAAAGATATTCGATAACATGAGGATCTACTCTCTTTTATATCCTTCCTTTGCTGATCACTCTGCTGGACAAGGTCCCCAAGAGGGAGACATCCTTCTCCTCTCATATACATAAAAAGCTAGTGATAATGAGGGAAAAGAGAACAATGATTACAGAAATGGTTATTTTCAGTGGCTAATAAAACACTAACATTAAAAATGATACCCTGAAACTCCCAATTCTCTCCCATATCTCGGGCAGAGGGCAAGTCAGGGGTGCTACAGAGATCACAACAAAGCTACTGGCAGAGTTTGAACCACAATGCATGCAGGGACAGAATGAAGTGAAAGGACAGAGCCTCAAGGAACAAATGAAAATTAACAAGACAAAGGAGAACAGGCATGGATGAGAAAAAAGGTAGACCTGAATTATAGTTTCCATAGGTCTCTAGGTCCAGAGTCAATCAGAAGACTTTGGATTGGCAAGAGGGGTAAAAATACTTTGAATAAAGATGTGTGAGATGGCCAGAGCAATTAGGAATTATCCAGGTGGCTAGACTGATGTAGCCAGAAATTAGTTAATAAAACTATGAGATAGCATATGTCAAATATTCATATATAAATCTGTAAAATGTAAGTCTCATAAAATTAATCAAAATTCTGTGATAAAATTTAGTTTTTCAAGTGTAAAAAATGACAAATTTCT	TCGGTTTTGGAGGCAACACTCTTTTTTGCTTGGGATAAAGCCTCTTCAGGCTGTTTATCAATGTAAATAAAAGTATACTGTTCTATTCTTTCTTCTCGAGTCATTTTCAATGCTTTCTCTGCATGGGCAATGCCAATATCCCACTGAGCACGTTCTCTCTGAGGTCGGGGTTTCCGAATCTTTAAAAAAGATAGAGATTATCAGACATGCTTTACTCTAATAGGTACATTAAAATTGATATGTATTTCCCATGTGATCCTGTTATCTTTTCAGGTCTACATAAATATCTTCAGGTTCTTTGGTCAAACAAGTGGAATGTTCTATCTCCATAATTCTGATAAAAAGATATTCGATAACATGAGGATCTACTCTCTTTTATATCCTTCCTTTGCTGATCACTCTGCTGGACAAGGTCCCCAAGAGGGAGACATCCTTCTCCTCTCATATACATAAAAAGCTAGTGATAATGAGGGAAAAGAGAACAATGATTACAGAAATGGTTATTTTCAGTGGCTAATAAAACACTAACATTAAAAATGATACCCTGAAACTCCCAATTCTCTCCCATATCTCGGGCAGAGGGCAAGTCAGGGGTGCTACAGAGATCACAACAAAGCTACTGGCAGAGTTTGAACCACAATGCATGCAGGGACAGAATGAAGTGAAAGGACAGAGCCTCAAGGAACAAATGAAAATTAACAAGACAAAGGAGAACAGGCATGGATGAGAAAAAAGGTAGACCTGAATTATAGTTTCCATAGGTCTCTAGGTCCAGAGTCAATCAGAAGACTTTGGATTGGCAAGAGGGGTAAAAATACTTTGAATAAAGATGTGTGAGATGGCCAGAGCAATTAGGAATTATCCAGGTGGCTAGACTGATGTAGCCAGAAATTAGTTAATAAAACTATGAGATAGCATATGTCAAATATTCATATATAAATCTGTAAAATGTAAGTCTCATAAAATTAATCAAAATTCTGTGATAAAATTTAGTTTTTCAAGTGTAAAAAATGACAAATTTCT	-			P-0020627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1553	109	1149	0	ENST00000317025.8:c.1065+696_1246del		p.X355_splice	ENST00000317025	NM_023034.1	355																																																																																
SOX17	64321	MSKCC	GRCh37	8	55372429	55372495	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGATGGGCCTCCCCTACCAGGGGCATGACTCCGGTGTGAATCTCCCCGACAGCCACGGGGCCATT	TGAGATGGGCCTCCCCTACCAGGGGCATGACTCCGGTGTGAATCTCCCCGACAGCCACGGGGCCATT	-			P-0020627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1672	172	1264	0	ENST00000297316.4:c.1120_1186del	p.Glu374ProfsTer58	p.E374Pfs*58	ENST00000297316	NM_022454.3	373	ccTGAGATGGGCCTCCCCTACCAGGGGCATGACTCCGGTGTGAATCTCCCCGACAGCCACGGGGCCATT/cc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864207	117864207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1696	101	734	0	ENST00000297338.2:c.1450G>A	p.Asp484Asn	p.D484N	ENST00000297338	NM_006265.2	484	Gac/Aac																																																																															
ATRX	546	MSKCC	GRCh37	X	76907792	76907792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	45	496	0	ENST00000373344.5:c.4369G>A	p.Glu1457Lys	p.E1457K	ENST00000373344	NM_000489.3	1457	Gag/Aag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41201158	41201160	+	missense_variant	Missense_Mutation	ONP	AAA	AAA	GAG			P-0020627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	144	1099	2	ENST00000357654.3:c.5384_5386delinsCTC	p.Leu1795_Ser1796delinsProPro	p.L1795_S1796delinsPP	ENST00000357654	NM_007294.3	1795	cTTTca/cCTCca																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592045	67592133	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAAGACATGGAATGTTGGAAGCAGCAACCGAAACAAAGCTGAAAACCTGTTGCGAGGGAAGCGAGATGGCACTTTTCTTGTCCGGGA	GAGAAGACATGGAATGTTGGAAGCAGCAACCGAAACAAAGCTGAAAACCTGTTGCGAGGGAAGCGAGATGGCACTTTTCTTGTCCGGGA	-			P-0020647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	25	324	0	ENST00000274335.5:c.1864_1952del	p.Lys622GlnfsTer2	p.K622Qfs*2	ENST00000274335		621	GAGAAGACATGGAATGTTGGAAGCAGCAACCGAAACAAAGCTGAAAACCTGTTGCGAGGGAAGCGAGATGGCACTTTTCTTGTCCGGGAg/g																																																																															
STAG2	10735	MSKCC	GRCh37	X	123195650	123195650	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	194	477	0	ENST00000218089.9:c.1564A>T	p.Ile522Phe	p.I522F	ENST00000218089	NM_001042749.1	522	Att/Ttt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969458	44969459	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0020647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	258	692	0	ENST00000377967.4:c.4140_4141delinsC	p.Met1380IlefsTer4	p.M1380Ifs*4	ENST00000377967	NM_021140.2	1380	atGGag/atCag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519972		P-0020650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	293	708	1	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																															
APC	324	MSKCC	GRCh37	5	112175136	112175136	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	27	281	0	ENST00000257430.4:c.3845C>A	p.Ser1282Ter	p.S1282*	ENST00000257430	NM_000038.5	1282	tCa/tAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910429	32910429	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	42	462	0	ENST00000380152.3:c.1937G>T	p.Ser646Ile	p.S646I	ENST00000380152		646	aGc/aTc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061192	38061192	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	238	674	0	ENST00000250448.2:c.797T>C	p.Phe266Ser	p.F266S	ENST00000250448	NM_004496.3	266	tTc/tCc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061243	38061243	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	436	1029	0	ENST00000250448.2:c.746A>C	p.Asp249Ala	p.D249A	ENST00000250448	NM_004496.3	249	gAc/gCc																																																																															
APC	324	MSKCC	GRCh37	5	112157637	112157646	+	frameshift_variant	Frame_Shift_Del	DEL	CTAATGAAAC	CTAATGAAAC	-			P-0020650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	67	729	0	ENST00000257430.4:c.1357_1366del	p.Leu453PhefsTer11	p.L453Ffs*11	ENST00000257430	NM_000038.5	453	CTAATGAAACtt/tt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68984792	68984792	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	379	720	3	ENST00000288368.4:c.1556G>A	p.Trp519Ter	p.W519*	ENST00000288368	NM_024870.2	519	tGg/tAg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199400	16199400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	76	527	0	ENST00000375759.3:c.173G>A	p.Ser58Asn	p.S58N	ENST00000375759	NM_015001.2	58	aGt/aAt																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551846	150551846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	69	248	1	ENST00000369026.2:c.161G>A	p.Gly54Asp	p.G54D	ENST00000369026	NM_021960.4	54	gGc/gAc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163298058	163298058	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	179	861	0	ENST00000271452.3:c.240del	p.Gly81AlafsTer8	p.G81Afs*8	ENST00000271452	NM_145697.2	80	gAa/ga																																																																															
CDC73	79577	MSKCC	GRCh37	1	193091355	193091355	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	42	367	2	ENST00000367435.3:c.25C>T	p.Arg9Ter	p.R9*	ENST00000367435	NM_024529.4	9	Cga/Tga																																																																															
IL10	3586	MSKCC	GRCh37	1	206942075	206942075	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	45	492	1	ENST00000423557.1:c.445-2A>G		p.X149_splice	ENST00000423557	NM_000572.2	149																																																																																
DIS3	22894	MSKCC	GRCh37	13	73349393	73349393	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	117	680	1	ENST00000377767.4:c.943C>T	p.Gln315Ter	p.Q315*	ENST00000377767	NM_014953.3	315	Caa/Taa																																																																															
MGA	23269	MSKCC	GRCh37	15	42058666	42058666	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	49	284	0	ENST00000219905.7:c.8386A>T	p.Thr2796Ser	p.T2796S	ENST00000219905	NM_001164273.1	2796	Aca/Tca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845917	72845917	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	36	548	0	ENST00000268489.5:c.3550A>G	p.Lys1184Glu	p.K1184E	ENST00000268489	NM_006885.3	1184	Aag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	192	957	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096987	11096987	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	220	988	1	ENST00000344626.4:c.478C>T	p.Gln160Ter	p.Q160*	ENST00000344626	NM_003072.3	160	Cag/Tag																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355547	15355547	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	219	889	1	ENST00000263377.2:c.2185G>T	p.Gly729Trp	p.G729W	ENST00000263377	NM_058243.2	729	Ggg/Tgg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18972856	18972856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	82	649	1	ENST00000262803.5:c.2495G>A	p.Arg832His	p.R832H	ENST00000262803	NM_002911.3	832	cGc/cAc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25523082	25523082	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	101	851	1	ENST00000264709.3:c.103A>T	p.Lys35Ter	p.K35*	ENST00000264709	NM_175629.2	35	Aag/Tag																																																																															
ALK	238	MSKCC	GRCh37	2	29519815	29519815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	43	805	0	ENST00000389048.3:c.1756G>T	p.Ala586Ser	p.A586S	ENST00000389048	NM_004304.4	586	Gcc/Tcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927421	178927422	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCTTCC			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	58	605	0	ENST00000263967.3:c.1187_1192dup	p.Leu396_Pro397dup	p.L396_P397dup	ENST00000263967	NM_006218.2	396	gat/gaTCTTCCt																																																																															
TP63	8626	MSKCC	GRCh37	3	189584548	189584548	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	128	579	0	ENST00000264731.3:c.844G>T	p.Gly282Ter	p.G282*	ENST00000264731	NM_003722.4	282	Gga/Tga																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912317	29912323	+	frameshift_variant	Frame_Shift_Del	DEL	TGCTGGC	TGCTGGC	-			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	226	1001	0	ENST00000376809.5:c.936_942del	p.Ala313TrpfsTer7	p.A313Wfs*7	ENST00000376809	NM_002116.7	312	atTGCTGGC/at																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953016	2953016	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	34	858	0	ENST00000396946.4:c.2924G>T	p.Arg975Leu	p.R975L	ENST00000396946	NM_032415.4	975	cGg/cTg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5077551	5077551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	92	584	0	ENST00000381652.3:c.1963A>G	p.Lys655Glu	p.K655E	ENST00000381652	NM_004972.3	655	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0020778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	527	715	1	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098973	178098973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	188	352	0	ENST00000397062.3:c.72G>C	p.Trp24Cys	p.W24C	ENST00000397062	NM_006164.4	24	tgG/tgC																																																																															
MTOR	2475	MSKCC	GRCh37	1	11186007	11187029	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAATTGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCAAGATTGCGCCATTATACTCCAGCCTGGGCAACAAGAGCAAAACTCTGGCTCAAAAAAAAAAAAAAAAAAAAAAAAAGCGAGAGGCCTCAAAGTGCCACCACAGCACTCAGGCCTCACTAAAACATCCCCCATAAGTAACACTCTACCCCAAGGGAAATTCCAGAGCCCACTTGCTTAACAAATCTCACTGTGAGAATCCACTTGTTCATTTTACACAATCATTTACCACAGAGACTATGATGGTAAAAAAAAAAAGAAAAAAATTTCAAGAGCCAGAAGCCCCCGTTTCAGAGGAGCTAGCACCTTCCCTGCTTGCACCCAGCTGCCTCCTCCCTGGCCTCATCAGTCTCCAACACCTGCCTTCCACTGTTACTTCTCTGCCTTGCATGCCTTTGTCATTCCCTTTATGTGTGATCATGCTTCACATAAGCCCAACTACATGAATGAACTAAGTCCTGAGGACATAATGAGAAATTTGCTTGCCCTCTATTTTCCTCTCAATGAGCATGGGAGAGATGTAGCTATGATAGGTGAGTAGTGGGAATGGCAAGCAGTAATTTCAGAAGAGGGAAGGGGTCTCAGCCAGTGTAGGAGGGAGAAGTGGGTGACAGAAGTGCACAATGGTCCTTACCCATAAGTGTCAATTTCCGGGGCCTCTGCTTGGATGTGATGACTTGCAAAGACGGTGCTATGGACTGAATGCGAATGATTGGCTGGTTGGGGTCATATGTTCCTGGCACAGCCAATTCAAGGTCCCGGCACATCAGAAGTTTTGGGGAAACATATTGCAGCTCTAAGGATGTGAGCTGTAAATAATTACCAAAGGATTTAGTGTTCTGCCTCCAGGGAAGAATTTAAACGCAATTTAAGTATTTTTCAGTGGATTGCTAATAACAATTACTTGTCCCAAAGCAGAAGTAAAACCAGATGCTTTGGAATGAGTGTTAGAACATTCATAGACAGTAAAACAGAAAGGACTATA	AGAATTGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCAAGATTGCGCCATTATACTCCAGCCTGGGCAACAAGAGCAAAACTCTGGCTCAAAAAAAAAAAAAAAAAAAAAAAAAGCGAGAGGCCTCAAAGTGCCACCACAGCACTCAGGCCTCACTAAAACATCCCCCATAAGTAACACTCTACCCCAAGGGAAATTCCAGAGCCCACTTGCTTAACAAATCTCACTGTGAGAATCCACTTGTTCATTTTACACAATCATTTACCACAGAGACTATGATGGTAAAAAAAAAAAGAAAAAAATTTCAAGAGCCAGAAGCCCCCGTTTCAGAGGAGCTAGCACCTTCCCTGCTTGCACCCAGCTGCCTCCTCCCTGGCCTCATCAGTCTCCAACACCTGCCTTCCACTGTTACTTCTCTGCCTTGCATGCCTTTGTCATTCCCTTTATGTGTGATCATGCTTCACATAAGCCCAACTACATGAATGAACTAAGTCCTGAGGACATAATGAGAAATTTGCTTGCCCTCTATTTTCCTCTCAATGAGCATGGGAGAGATGTAGCTATGATAGGTGAGTAGTGGGAATGGCAAGCAGTAATTTCAGAAGAGGGAAGGGGTCTCAGCCAGTGTAGGAGGGAGAAGTGGGTGACAGAAGTGCACAATGGTCCTTACCCATAAGTGTCAATTTCCGGGGCCTCTGCTTGGATGTGATGACTTGCAAAGACGGTGCTATGGACTGAATGCGAATGATTGGCTGGTTGGGGTCATATGTTCCTGGCACAGCCAATTCAAGGTCCCGGCACATCAGAAGTTTTGGGGAAACATATTGCAGCTCTAAGGATGTGAGCTGTAAATAATTACCAAAGGATTTAGTGTTCTGCCTCCAGGGAAGAATTTAAACGCAATTTAAGTATTTTTCAGTGGATTGCTAATAACAATTACTTGTCCCAAAGCAGAAGTAAAACCAGATGCTTTGGAATGAGTGTTAGAACATTCATAGACAGTAAAACAGAAAGGACTATA	-			P-0020778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			0	216	0	0	ENST00000361445.4:c.6351+38_6526+672del		p.X2117_splice	ENST00000361445	NM_004958.3	2117																																																																																
CSF3R	1441	MSKCC	GRCh37	1	36932266	36932266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	471	684	0	ENST00000361632.4:c.2203G>A	p.Ala735Thr	p.A735T	ENST00000361632		735	Gca/Aca																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937567	36937690	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGCCTCCCAGACCTGTTGGAGTCCTAAGCCCCGGTTTGTAGGGATCTGTTTGGACTGCGGGAGGTGTCGAGGTGGAGGGATGGCCTTCAGAGGGAGTCACCTTCCAGAACAGCTGCACTGTCCT	CGCCTCCCAGACCTGTTGGAGTCCTAAGCCCCGGTTTGTAGGGATCTGTTTGGACTGCGGGAGGTGTCGAGGTGGAGGGATGGCCTTCAGAGGGAGTCACCTTCCAGAACAGCTGCACTGTCCT	-			P-0020778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	51	279	0	ENST00000361632.4:c.1048_1071+100del		p.X350_splice	ENST00000361632		350																																																																																
KDM5A	5927	MSKCC	GRCh37	12	430250	430250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	167	373	0	ENST00000399788.2:c.2452C>T	p.Arg818Trp	p.R818W	ENST00000399788	NM_001042603.1	818	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431871	49431871	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	522	683	0	ENST00000301067.7:c.9268G>T	p.Glu3090Ter	p.E3090*	ENST00000301067	NM_003482.3	3090	Gag/Tag																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665429	138665429	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1510	428	651	0	ENST00000330315.3:c.136C>G	p.Pro46Ala	p.P46A	ENST00000330315	NM_023067.3	46	Ccg/Gcg																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821529	32821529	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	365	688	0	ENST00000354258.4:c.65C>G	p.Ser22Trp	p.S22W	ENST00000354258	NM_000593.5	22	tCg/tGg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873631	151873631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	202	466	2	ENST00000262189.6:c.8907G>A	p.Met2969Ile	p.M2969I	ENST00000262189	NM_170606.2	2969	atG/atA																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090829	5090829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	112	298	0	ENST00000381652.3:c.2977G>A	p.Gly993Arg	p.G993R	ENST00000381652	NM_004972.3	993	Gga/Aga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3831277	3831277	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	160	532	0	ENST00000262367.5:c.1604G>T	p.Gly535Val	p.G535V	ENST00000262367	NM_004380.2	535	gGa/gTa																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607376	46607376	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	204	749	0	ENST00000263734.3:c.1565A>T	p.Asn522Ile	p.N522I	ENST00000263734	NM_001430.4	522	aAt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0020797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	471	1241	3	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2985587	2985587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	75	706	0	ENST00000396946.4:c.224G>A	p.Arg75Gln	p.R75Q	ENST00000396946	NM_032415.4	75	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577054	7577054	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	703	1375	1	ENST00000269305.4:c.884delC	p.Pro295LeufsTer50	p.P295Lfs*50	ENST00000269305	NM_001126112.2	295	cCt/ct																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420464	49420464	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	559	1072	1	ENST00000301067.7:c.15285C>G	p.Cys5095Trp	p.C5095W	ENST00000301067	NM_003482.3	5095	tgC/tgG																																																																															
APC	324	MSKCC	GRCh37	5	112175921	112175922	+	stop_gained	Nonsense_Mutation	DNP	GA	GA	TG			P-0020812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	344	451	0	ENST00000257430.4:c.4630_4631delinsTG	p.Glu1544Ter	p.E1544*	ENST00000257430	NM_000038.5	1544	GAa/TGa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0020946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	118	607	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0020946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	246	869	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0020946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	385	1015	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210733	5210733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	190	1130	1	ENST00000357368.4:c.5318C>T	p.Ser1773Leu	p.S1773L	ENST00000357368	NM_002850.3	1773	tCg/tTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55968633	55968633	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200338299		P-0020946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	161	887	2	ENST00000263923.4:c.2030C>T	p.Thr677Met	p.T677M	ENST00000263923	NM_002253.2	677	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112174349	112174349	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	59	404	1	ENST00000257430.4:c.3058G>T	p.Glu1020Ter	p.E1020*	ENST00000257430	NM_000038.5	1020	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175608	112175608	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	93	464	0	ENST00000257430.4:c.4317del	p.Pro1440HisfsTer33	p.P1440Hfs*33	ENST00000257430	NM_000038.5	1439	ccT/cc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3830766	3830767	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	140	722	0	ENST00000262367.5:c.1789dup	p.Thr597AsnfsTer11	p.T597Nfs*11	ENST00000262367	NM_004380.2	597	act/aAct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	53	807	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78866590	78866590	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	91	821	3	ENST00000306801.3:c.2163C>A	p.Ser721Arg	p.S721R	ENST00000306801	NM_020761.2	721	agC/agA																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751531	57751531	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55645589		P-0020962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	54	461	1	ENST00000274289.3:c.1460C>T	p.Pro487Leu	p.P487L	ENST00000274289	NM_006622.3	487	cCg/cTg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	58	476	0	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288993	212288993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	58	839	0	ENST00000342788.4:c.2753G>A	p.Gly918Glu	p.G918E	ENST00000342788	NM_005235.2	918	gGa/gAa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518261	8518261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	21	444	0	ENST00000356435.5:c.1130G>T	p.Arg377Leu	p.R377L	ENST00000356435		377	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0020966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	51	786	0	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																																
DDR2	4921	MSKCC	GRCh37	1	162729728	162729728	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	104	810	0	ENST00000367921.3:c.814A>G	p.Met272Val	p.M272V	ENST00000367921	NM_006182.2	272	Atg/Gtg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243800975	243800975	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	79	967	0	ENST00000263826.5:c.499G>T	p.Glu167Ter	p.E167*	ENST00000263826	NM_005465.4	167	Gag/Tag																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649819	88649819	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0020966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	49	600	1	ENST00000372037.3:c.68G>T	p.Gly23Val	p.G23V	ENST00000372037	NM_004329.2	23	gGa/gTa																																																																															
PGR	5241	MSKCC	GRCh37	11	100998164	100998164	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0020966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	45	566	0	ENST00000325455.5:c.1637+1G>T		p.X546_splice	ENST00000325455	NM_001202474.3	546																																																																																
TP53	7157	MSKCC	GRCh37	17	7573976	7573976	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0020966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	84	987	1	ENST00000269305.4:c.1051A>T	p.Lys351Ter	p.K351*	ENST00000269305	NM_001126112.2	351	Aag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29587533	29587533	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0020966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	61	614	0	ENST00000358273.4:c.4577+1del		p.R1526fs	ENST00000358273	NM_001042492.2	1526	aGg/ag																																																																															
INHA	3623	MSKCC	GRCh37	2	220440183	220440183	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	65	1047	0	ENST00000243786.2:c.1036G>T	p.Gly346Ter	p.G346*	ENST00000243786	NM_002191.3	346	Gga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40727156	40727156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	55	801	2	ENST00000373198.4:c.3808C>T	p.His1270Tyr	p.H1270Y	ENST00000373198	NM_133170.3	1270	Cac/Tac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448520	89448520	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	79	546	0	ENST00000336596.2:c.1484C>G	p.Thr495Ser	p.T495S	ENST00000336596	NM_005233.5	495	aCc/aGc																																																																															
BCL6	604	MSKCC	GRCh37	3	187444680	187444680	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	40	449	2	ENST00000232014.4:c.1547G>T	p.Gly516Val	p.G516V	ENST00000232014	NM_001130845.1	516	gGg/gTg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141005	55141005	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	G			P-0020966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	41	431	0	ENST00000257290.5:c.1654-3T>G		p.X552_splice	ENST00000257290	NM_006206.4	552																																																																																
KDR	3791	MSKCC	GRCh37	4	55980402	55980402	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	65	591	0	ENST00000263923.4:c.689C>A	p.Pro230Gln	p.P230Q	ENST00000263923	NM_002253.2	230	cCg/cAg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562757	176562757	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	87	810	0	ENST00000439151.2:c.653G>C	p.Arg218Thr	p.R218T	ENST00000439151	NM_022455.4	218	aGa/aCa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69129952	69129952	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0020966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	41	440	0	ENST00000288368.4:c.4706A>T	p.Gln1569Leu	p.Q1569L	ENST00000288368	NM_024870.2	1569	cAg/cTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484216	8484216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	57	797	0	ENST00000356435.5:c.3316G>T	p.Asp1106Tyr	p.D1106Y	ENST00000356435		1106	Gat/Tat																																																																															
TEK	7010	MSKCC	GRCh37	9	27197378	27197378	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	95	931	0	ENST00000380036.4:c.1690C>A	p.Gln564Lys	p.Q564K	ENST00000380036	NM_000459.3	564	Caa/Aaa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045906	47045906	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	71	733	0	ENST00000329236.7:c.2467G>C	p.Ala823Pro	p.A823P	ENST00000329236	NM_001204466.1	823	Gca/Cca																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412548	63412548	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	52	656	0	ENST00000330258.3:c.619C>A	p.His207Asn	p.H207N	ENST00000330258	NM_152424.3	207	Cac/Aac																																																																															
MED12	9968	MSKCC	GRCh37	X	70338651	70338651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	89	773	0	ENST00000374080.3:c.47G>T	p.Arg16Leu	p.R16L	ENST00000374080		16	cGg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0020999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	189	991	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473780	67473780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	70	766	1	ENST00000327367.4:c.860G>A	p.Arg287Gln	p.R287Q	ENST00000327367	NM_005902.3	287	cGg/cAg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112888267	112888267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	120	800	0	ENST00000351677.2:c.283G>A	p.Val95Ile	p.V95I	ENST00000351677	NM_002834.3	95	Gtc/Atc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67358596	67358596	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	107	822	0	ENST00000327367.4:c.104T>C	p.Val35Ala	p.V35A	ENST00000327367	NM_005902.3	35	gTc/gCc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477070	67477070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	82	637	0	ENST00000327367.4:c.877G>A	p.Gly293Ser	p.G293S	ENST00000327367	NM_005902.3	293	Ggc/Agc																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374909	45374909	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	186	902	0	ENST00000262160.6:c.934T>C	p.Cys312Arg	p.C312R	ENST00000262160	NM_005901.5	312	Tgc/Cgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579575	7579575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	367	896	1	ENST00000269305.4:c.112C>T	p.Gln38Ter	p.Q38*	ENST00000269305	NM_001126112.2	38	Caa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105715	27105717	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0021010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	83	435	0	ENST00000324856.7:c.5334_5336del	p.Glu1780del	p.E1780del	ENST00000324856	NM_006015.4	1776	GAA/-																																																																															
RET	5979	MSKCC	GRCh37	10	43595960	43595960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	258	1120	3	ENST00000355710.3:c.127G>A	p.Asp43Asn	p.D43N	ENST00000355710	NM_020975.4	43	Gac/Aac																																																																															
ATM	472	MSKCC	GRCh37	11	108117747	108117747	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	78	593	0	ENST00000278616.4:c.958G>T	p.Val320Leu	p.V320L	ENST00000278616	NM_000051.3	320	Gtg/Ttg																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281359	49281359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1298	273	1177	3	ENST00000282018.3:c.406C>T	p.Arg136Cys	p.R136C	ENST00000282018	NM_020377.2	136	Cgt/Tgt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350936	89350936	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1304	225	1335	0	ENST00000301030.4:c.2014A>G	p.Ile672Val	p.I672V	ENST00000301030	NM_001256183.1	672	Ata/Gta																																																																															
BRCA1	672	MSKCC	GRCh37	17	41247888	41247888	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	65	847	0	ENST00000357654.3:c.645A>T	p.Glu215Asp	p.E215D	ENST00000357654	NM_007294.3	215	gaA/gaT																																																																															
APC	324	MSKCC	GRCh37	5	112174384	112174384	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0021010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	101	365	0	ENST00000257430.4:c.3093T>A	p.Tyr1031Ter	p.Y1031*	ENST00000257430	NM_000038.5	1031	taT/taA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860177	151860219	+	frameshift_variant	Frame_Shift_Del	DEL	TGAATTAATTGATCCTTGTTGTATATTCTGCTGCTGTAAAACC	TGAATTAATTGATCCTTGTTGTATATTCTGCTGCTGTAAAACC	-			P-0021010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	57	677	0	ENST00000262189.6:c.10443_10485del	p.Gln3481HisfsTer16	p.Q3481Hfs*16	ENST00000262189	NM_170606.2	3481	caGGTTTTACAGCAGCAGAATATACAACAAGGATCAATTAATTCA/ca																																																																															
TEK	7010	MSKCC	GRCh37	9	27202925	27202925	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	177	756	0	ENST00000380036.4:c.2017C>A	p.Arg673Ser	p.R673S	ENST00000380036	NM_000459.3	673	Cgt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577093	7577093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	105	1075	0	ENST00000269305.4:c.845G>C	p.Arg282Pro	p.R282P	ENST00000269305	NM_001126112.2	282	cGg/cCg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692793	89692793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	29	761	0	ENST00000371953.3:c.277C>T	p.His93Tyr	p.H93Y	ENST00000371953	NM_000314.4	93	Cat/Tat																																																																															
PIM1	5292	MSKCC	GRCh37	6	37138642	37138642	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	88	951	0	ENST00000373509.5:c.176C>G	p.Ser59Cys	p.S59C	ENST00000373509	NM_002648.3	59	tCc/tGc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125503082	125503082	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	87	727	0	ENST00000428830.2:c.449G>T	p.Gly150Val	p.G150V	ENST00000428830	NM_001114121.2	150	gGc/gTc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434548	110434548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	54	900	0	ENST00000375856.3:c.3853G>T	p.Gly1285Cys	p.G1285C	ENST00000375856	NM_003749.2	1285	Ggc/Tgc																																																																															
BLM	641	MSKCC	GRCh37	15	91303921	91303921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	82	1050	0	ENST00000355112.3:c.1318G>A	p.Glu440Lys	p.E440K	ENST00000355112	NM_000057.2	440	Gag/Aag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348008	89348008	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	71	1253	2	ENST00000301030.4:c.4942C>G	p.Pro1648Ala	p.P1648A	ENST00000301030	NM_001256183.1	1648	Cca/Gca																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59886070	59886070	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	77	988	1	ENST00000259008.2:c.676A>C	p.Ser226Arg	p.S226R	ENST00000259008	NM_032043.2	226	Agt/Cgt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41514481	41514481	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	181	1072	0	ENST00000373198.4:c.180G>T	p.Trp60Cys	p.W60C	ENST00000373198	NM_133170.3	60	tgG/tgT																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651475	52651475	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0021197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	121	1130	0	ENST00000394830.3:c.1621A>T	p.Arg541Ter	p.R541*	ENST00000394830	NM_018313.4	541	Aga/Tga																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851601	134851601	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	60	993	0	ENST00000398015.3:c.1007C>A	p.Thr336Lys	p.T336K	ENST00000398015	NM_004441.4	336	aCg/aAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0021225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	26	650	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0021225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	35	466	0	ENST00000412916.2:c.165+1del		p.X55_splice	ENST00000412916		55																																																																																
ERCC4	2072	MSKCC	GRCh37	16	14042018	14042018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	62	704	0	ENST00000311895.7:c.2565G>A	p.Met855Ile	p.M855I	ENST00000311895	NM_005236.2	855	atG/atA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0021231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	534	772	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
POLE	5426	MSKCC	GRCh37	12	133218876	133218876	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	274	866	2	ENST00000320574.5:c.5060C>A	p.Ser1687Tyr	p.S1687Y	ENST00000320574	NM_006231.2	1687	tCc/tAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900635	32900635	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0021231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	161	596	0	ENST00000380152.3:c.517-1G>C		p.X173_splice	ENST00000380152		173																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	10031863	10031863	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	248	925	0	ENST00000330684.3:c.960C>A	p.Cys320Ter	p.C320*	ENST00000330684	NM_001134407.1	320	tgC/tgA																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610172	10610172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	281	856	1	ENST00000171111.5:c.538G>A	p.Asp180Asn	p.D180N	ENST00000171111	NM_203500.1	180	Gac/Aac																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47596667	47596667	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	176	505	0	ENST00000263735.4:c.23C>G	p.Ala8Gly	p.A8G	ENST00000263735	NM_002354.2	8	gCg/gGg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143003339	143003339	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0021231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	200	764	0	ENST00000262992.4:c.2488-1G>T		p.X830_splice	ENST00000262992	NM_001101669.1	830																																																																																
PARK2	5071	MSKCC	GRCh37	6	161969933	161969933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	198	741	2	ENST00000366898.1:c.1036G>T	p.Asp346Tyr	p.D346Y	ENST00000366898	NM_004562.2	346	Gac/Tac																																																																															
BARD1	580	MSKCC	GRCh37	2	215595221	215595221	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	85	427	0	ENST00000260947.4:c.1915T>C	p.Cys639Arg	p.C639R	ENST00000260947	NM_000465.2	639	Tgt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0021281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	143	877	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0021281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	180	671	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112175248	112175249	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0021281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	79	320	0	ENST00000257430.4:c.3959_3960delTG	p.Val1320GlufsTer11	p.V1320Efs*11	ENST00000257430	NM_000038.5	1319	ccTGtg/cctg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604707	48604707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	111	566	0	ENST00000342988.3:c.1529G>A	p.Gly510Glu	p.G510E	ENST00000342988	NM_005359.5	510	gGa/gAa																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166238	118166238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	27	397	1	ENST00000369448.3:c.748C>T	p.Leu250Phe	p.L250F	ENST00000369448	NM_017709.3	250	Ctt/Ttt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175996741	175996741	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	66	642	0	ENST00000367669.3:c.1696T>A	p.Ser566Thr	p.S566T	ENST00000367669	NM_022457.5	566	Tct/Act																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117959	70117959	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	43	306	0	ENST00000245479.2:c.427T>C	p.Trp143Arg	p.W143R	ENST00000245479	NM_000346.3	143	Tgg/Cgg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288642	33288642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	22	489	0	ENST00000374542.5:c.910C>T	p.Leu304Phe	p.L304F	ENST00000374542	NM_001141970.1	304	Ctc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0021284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	57	766	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986753	36986754	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	12	116	0	ENST00000354822.5:c.935dup	p.Gln313ThrfsTer126	p.Q313Tfs*126	ENST00000354822	NM_001079668.2	312	cta/ctTa																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987070	36987070	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	56	915	0	ENST00000354822.5:c.619G>T	p.Glu207Ter	p.E207*	ENST00000354822	NM_001079668.2	207	Gag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1207065	1207065	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	36	913	2	ENST00000326873.7:c.157delG	p.Asp53ThrfsTer11	p.D53Tfs*11	ENST00000326873	NM_000455.4	51	atG/at																																																																															
STK11	6794	MSKCC	GRCh37	19	1207136	1207138	+	frameshift_variant	Frame_Shift_Del	DEL	GGG	GGG	CC			P-0021284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	53	1076	3	ENST00000326873.7:c.224_226delinsCC	p.Arg75ThrfsTer21	p.R75Tfs*21	ENST00000326873	NM_000455.4	75	aGGGcc/aCCcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	92	773	1	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753660142		P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	196	770	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094386	27094386	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	269	561	0	ENST00000324856.7:c.3094G>T	p.Glu1032Ter	p.E1032*	ENST00000324856	NM_006015.4	1032	Gag/Tag																																																																															
SDHB	6390	MSKCC	GRCh37	1	17355135	17355135	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	299	566	0	ENST00000375499.3:c.383A>C	p.Tyr128Ser	p.Y128S	ENST00000375499	NM_003000.2	128	tAc/tCc																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944694	31944694	+	stop_lost	Nonstop_Mutation	SNP	T	T	G			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	17	135	0	ENST00000340398.3:c.407A>C	p.Ter136SerextTer21	p.*136Sext*21	ENST00000340398	NM_001013699.2	136	tAa/tCa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112088	115112088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	65	902	1	ENST00000257566.3:c.1652C>A	p.Thr551Asn	p.T551N	ENST00000257566	NM_016569.3	551	aCc/aAc																																																																															
MSI1	4440	MSKCC	GRCh37	12	120789156	120789156	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	116	521	1	ENST00000257552.2:c.781G>T	p.Glu261Ter	p.E261*	ENST00000257552	NM_002442.3	261	Gag/Tag																																																																															
POLE	5426	MSKCC	GRCh37	12	133240982	133240982	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	59	711	0	ENST00000320574.5:c.2535G>T	p.Gln845His	p.Q845H	ENST00000320574	NM_006231.2	845	caG/caT																																																																															
FLT3	2322	MSKCC	GRCh37	13	28609664	28609664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	177	585	1	ENST00000241453.7:c.1565C>A	p.Thr522Lys	p.T522K	ENST00000241453	NM_004119.2	522	aCa/aAa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231612	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	44	187	0	ENST00000357368.4:c.1864_1865del	p.Pro622SerfsTer4	p.P622Sfs*4	ENST00000357368	NM_002850.3	622	CCt/t																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660615	227660615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	68	616	1	ENST00000305123.5:c.2840G>A	p.Gly947Glu	p.G947E	ENST00000305123	NM_005544.2	947	gGg/gAg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523241	9523241	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	181	644	0	ENST00000353224.5:c.1996C>A	p.Leu666Ile	p.L666I	ENST00000353224	NM_177990.2	666	Cta/Ata																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385137	41385137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	224	759	1	ENST00000373198.4:c.824C>A	p.Ser275Tyr	p.S275Y	ENST00000373198	NM_133170.3	275	tCt/tAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419850	41419850	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	98	403	0	ENST00000373198.4:c.471G>T	p.Trp157Cys	p.W157C	ENST00000373198	NM_133170.3	157	tgG/tgT																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44514823	44514823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	166	565	0	ENST00000291552.4:c.424G>T	p.Ala142Ser	p.A142S	ENST00000291552	NM_006758.2	142	Gcc/Tcc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851791	134851791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	47	696	0	ENST00000398015.3:c.1197C>A	p.His399Gln	p.H399Q	ENST00000398015	NM_004441.4	399	caC/caA																																																																															
SDHA	6389	MSKCC	GRCh37	5	233631	233631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	68	262	0	ENST00000264932.6:c.935G>T	p.Arg312Leu	p.R312L	ENST00000264932	NM_004168.2	312	cGt/cTt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131977979	131977979	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	135	488	0	ENST00000265335.6:c.3862A>G	p.Arg1288Gly	p.R1288G	ENST00000265335		1288	Agg/Ggg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672288	30672288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	189	764	1	ENST00000376406.3:c.4672G>T	p.Gly1558Cys	p.G1558C	ENST00000376406	NM_014641.2	1558	Ggc/Tgc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32182009	32182009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	85	813	2	ENST00000375023.3:c.2045G>A	p.Gly682Asp	p.G682D	ENST00000375023	NM_004557.3	682	gGt/gAt																																																																															
PIM1	5292	MSKCC	GRCh37	6	37141746	37141746	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	87	603	0	ENST00000373509.5:c.821G>T	p.Arg274Ile	p.R274I	ENST00000373509	NM_002648.3	274	aGa/aTa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8375991	8375991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	141	356	0	ENST00000356435.5:c.4606C>A	p.Arg1536Ser	p.R1536S	ENST00000356435		1536	Cgt/Agt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0021322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	123	534	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55143660	55143660	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0021322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	35	327	0	ENST00000257290.5:c.1891+1del		p.X631_splice	ENST00000257290	NM_006206.4	631																																																																																
HIST1H2BD	3017	MSKCC	GRCh37	6	26158401	26158401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1293	161	956	0	ENST00000289316.2:c.4C>T	p.Pro2Ser	p.P2S	ENST00000289316	NM_138720.2	2	Cct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	87	960	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597402	10597402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	147	1118	1	ENST00000171111.5:c.1801C>T	p.Arg601Trp	p.R601W	ENST00000171111	NM_203500.1	601	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	119	882	2	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78414944	78414944	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	45	587	0	ENST00000370768.2:c.1822C>T	p.Gln608Ter	p.Q608*	ENST00000370768	NM_003902.3	608	Cag/Tag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120471665	120471665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	46	623	0	ENST00000256646.2:c.3826G>A	p.Glu1276Lys	p.E1276K	ENST00000256646	NM_024408.3	1276	Gag/Aag																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724445	112724445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	90	863	0	ENST00000369452.4:c.329G>A	p.Arg110Lys	p.R110K	ENST00000369452	NM_007373.3	110	aGa/aAa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646846	23646846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	79	996	0	ENST00000261584.4:c.1021G>A	p.Glu341Lys	p.E341K	ENST00000261584	NM_024675.3	341	Gaa/Aaa																																																																															
MSI2	124540	MSKCC	GRCh37	17	55704606	55704606	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	165	1016	0	ENST00000284073.2:c.670del	p.Ala224ArgfsTer76	p.A224Rfs*76	ENST00000284073	NM_138962.2	223	gtG/gt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023307	31023307	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	81	709	1	ENST00000375687.4:c.2792A>T	p.Glu931Val	p.E931V	ENST00000375687	NM_015338.5	931	gAg/gTg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851787	134851787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	78	838	0	ENST00000398015.3:c.1193C>A	p.Ala398Asp	p.A398D	ENST00000398015	NM_004441.4	398	gCc/gAc																																																																															
ATR	545	MSKCC	GRCh37	3	142217532	142217532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	70	739	0	ENST00000350721.4:c.5465C>T	p.Ser1822Leu	p.S1822L	ENST00000350721	NM_001184.3	1822	tCa/tTa																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430807	181430807	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	67	1097	0	ENST00000325404.1:c.659C>G	p.Ser220Trp	p.S220W	ENST00000325404	NM_003106.3	220	tCg/tGg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280121	66280121	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs201024355		P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	29	578	0	ENST00000273854.3:c.1568C>A	p.Thr523Lys	p.T523K	ENST00000273854	NM_004439.5	523	aCa/aAa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876315	35876315	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	72	647	0	ENST00000303115.3:c.1107C>G	p.Cys369Trp	p.C369W	ENST00000303115	NM_002185.3	369	tgC/tgG																																																																															
APC	324	MSKCC	GRCh37	5	112173828	112173828	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	30	472	0	ENST00000257430.4:c.2537C>A	p.Ser846Tyr	p.S846Y	ENST00000257430	NM_000038.5	846	tCt/tAt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180340	32180340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	104	968	3	ENST00000375023.3:c.2591C>T	p.Pro864Leu	p.P864L	ENST00000375023	NM_004557.3	864	cCc/cTc																																																																															
HGF	3082	MSKCC	GRCh37	7	81392173	81392173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	47	485	0	ENST00000222390.5:c.104G>T	p.Arg35Ile	p.R35I	ENST00000222390	NM_000601.4	35	aGa/aTa																																																																															
EZH2	2146	MSKCC	GRCh37	7	148514388	148514388	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	114	807	0	ENST00000320356.2:c.1336A>G	p.Arg446Gly	p.R446G	ENST00000320356	NM_004456.4	446	Aga/Gga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0021342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	440	1001	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	363	780	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434363	121434363	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	344	941	0	ENST00000257555.6:c.1127C>A	p.Pro376His	p.P376H	ENST00000257555		376	cCc/cAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89335055	89335055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	222	480	0	ENST00000301030.4:c.7823G>A	p.Arg2608Gln	p.R2608Q	ENST00000301030	NM_001256183.1	2608	cGg/cAg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13946178	13946178	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	359	912	0	ENST00000405192.2:c.918C>A	p.Tyr306Ter	p.Y306*	ENST00000405192	NM_001163147.1	306	taC/taA																																																																															
XIAP	331	MSKCC	GRCh37	X	123020291	123020291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	363	435	1	ENST00000355640.3:c.779C>T	p.Pro260Leu	p.P260L	ENST00000355640		260	cCa/cTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0021345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	25	464	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376521	118376522	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	73	504	1	ENST00000534358.1:c.9915dup	p.Pro3306ThrfsTer22	p.P3306Tfs*22	ENST00000534358	NM_005933.3	3305	tta/ttAa																																																																															
EP300	2033	MSKCC	GRCh37	22	41553291	41553291	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	206	959	1	ENST00000263253.7:c.3380A>G	p.Asn1127Ser	p.N1127S	ENST00000263253	NM_001429.3	1127	aAt/aGt																																																																															
TET1	80312	MSKCC	GRCh37	10	70450634	70450634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	305	656	0	ENST00000373644.4:c.5474C>T	p.Ser1825Leu	p.S1825L	ENST00000373644	NM_030625.2	1825	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0021349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	819	899	1	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453132	140453132	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	1028	599	2	ENST00000288602.6:c.1803A>C	p.Lys601Asn	p.K601N	ENST00000288602	NM_004333.4	601	aaA/aaC																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610028	81610028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	322	433	0	ENST00000298171.2:c.1626G>A	p.Met542Ile	p.M542I	ENST00000298171	NM_000369.2	542	atG/atA																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576121	88576122	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0021349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	959	986	1	ENST00000360948.2:c.1551_1552delinsAA	p.Phe517_Arg518delinsLeuSer	p.F517_R518delinsLS	ENST00000360948	NM_001012338.2	517	ttCCgt/ttAAgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610279	10610279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	1045	1094	1	ENST00000171111.5:c.431C>T	p.Ser144Phe	p.S144F	ENST00000171111	NM_203500.1	144	tCc/tTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499433	89499433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	580	664	1	ENST00000336596.2:c.2603G>A	p.Arg868Lys	p.R868K	ENST00000336596	NM_005233.5	868	aGa/aAa																																																																															
TET2	54790	MSKCC	GRCh37	4	106158106	106158193	+	frameshift_variant	Frame_Shift_Del	DEL	TGGAAAAAGGTAACTAAGCAAGAGAATCCACCTGCAAGCTGTGATAATGTGCAGCAAAAGAGCATCATTGAGACCATGGAGCAGCATC	TGGAAAAAGGTAACTAAGCAAGAGAATCCACCTGCAAGCTGTGATAATGTGCAGCAAAAGAGCATCATTGAGACCATGGAGCAGCATC	-			P-0021349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	180	353	0	ENST00000380013.4:c.3009_3096del	p.Trp1003Ter	p.W1003*	ENST00000380013	NM_001127208.2	1003	TGGAAAAAGGTAACTAAGCAAGAGAATCCACCTGCAAGCTGTGATAATGTGCAGCAAAAGAGCATCATTGAGACCATGGAGCAGCATCtg/tg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39617655	39617655	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0021362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	53	468	0	ENST00000262039.4:c.1840-1G>C		p.X614_splice	ENST00000262039	NM_002647.2	614																																																																																
EIF4A2	1974	MSKCC	GRCh37	3	186502264	186502264	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0021362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	146	356	1	ENST00000323963.5:c.73G>C	p.Glu25Gln	p.E25Q	ENST00000323963		25	Gag/Cag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106882	27106882	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	237	576	1	ENST00000324856.7:c.6493G>C	p.Glu2165Gln	p.E2165Q	ENST00000324856	NM_006015.4	2165	Gag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578551	7578552	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	433	1002	2	ENST00000269305.4:c.378dup	p.Ser127LeufsTer22	p.S127Lfs*22	ENST00000269305	NM_001126112.2	126	-/C																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030805	48030805	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	56	281	0	ENST00000234420.5:c.3419A>C	p.Lys1140Thr	p.K1140T	ENST00000234420	NM_000179.2	1140	aAg/aCg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44935946	44935946	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	224	320	0	ENST00000377967.4:c.2707C>G	p.Leu903Val	p.L903V	ENST00000377967	NM_021140.2	903	Cta/Gta																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	328	655	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221955	1221958	+	frameshift_variant	Frame_Shift_Del	DEL	TGAG	TGAG	-			P-0021423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	576	854	3	ENST00000326873.7:c.871_874del	p.Glu291ThrfsTer44	p.E291Tfs*44	ENST00000326873	NM_000455.4	290	ctTGAG/ct																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288840	15288840	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	34	417	0	ENST00000263388.2:c.3899T>C	p.Val1300Ala	p.V1300A	ENST00000263388	NM_000435.2	1300	gTg/gCg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858337	9858337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	87	468	0	ENST00000330684.3:c.3064C>T	p.Arg1022Cys	p.R1022C	ENST00000330684	NM_001134407.1	1022	Cgc/Tgc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115809	8115809	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	80	785	0	ENST00000346208.3:c.1158del	p.Lys387ArgfsTer17	p.K387Rfs*17	ENST00000346208		385	ttC/tt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578199	7578199	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	125	860	0	ENST00000269305.4:c.650T>C	p.Val217Ala	p.V217A	ENST00000269305	NM_001126112.2	217	gTg/gCg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303243	15303243	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	68	1294	0	ENST00000263388.2:c.285T>G	p.Ser95Arg	p.S95R	ENST00000263388	NM_000435.2	95	agT/agG																																																																															
ATR	545	MSKCC	GRCh37	3	142280234	142280234	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	54	500	0	ENST00000350721.4:c.1200G>C	p.Leu400Phe	p.L400F	ENST00000350721	NM_001184.3	400	ttG/ttC																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717730	89717730	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	229	705	0	ENST00000371953.3:c.755A>T	p.Asp252Val	p.D252V	ENST00000371953	NM_000314.4	252	gAt/gTt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730858	40730858	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200227405		P-0021479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	181	1019	0	ENST00000373198.4:c.3677G>A	p.Arg1226Gln	p.R1226Q	ENST00000373198	NM_133170.3	1226	cGa/cAa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	165	762	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																															
MGA	23269	MSKCC	GRCh37	15	42053959	42053959	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	37	452	0	ENST00000219905.7:c.7421T>C	p.Leu2474Pro	p.L2474P	ENST00000219905	NM_001164273.1	2474	cTa/cCa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89874705	89874705	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	177	1048	0	ENST00000389301.3:c.593A>C	p.Glu198Ala	p.E198A	ENST00000389301	NM_000135.2	198	gAa/gCa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70981903	70981903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	168	1055	3	ENST00000276594.2:c.193G>A	p.Ala65Thr	p.A65T	ENST00000276594	NM_024504.3	65	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0021537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	16	817	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593405	48593405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	14	517	0	ENST00000342988.3:c.1156G>A	p.Gly386Ser	p.G386S	ENST00000342988	NM_005359.5	386	Ggt/Agt																																																																															
HRAS	3265	MSKCC	GRCh37	11	534286	534286	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs104894228		P-0021547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	231	699	0	ENST00000311189.7:c.37G>C	p.Gly13Arg	p.G13R	ENST00000311189		13	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	162	771	3	ENST00000269305.4:c.797del	p.Gly266AspfsTer79	p.G266Dfs*79	ENST00000269305	NM_001126112.2	266	gGa/ga																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302250	15302250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	205	875	0	ENST00000263388.2:c.1021C>T	p.Pro341Ser	p.P341S	ENST00000263388	NM_000435.2	341	Ccc/Tcc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421039	49421039	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs398123721		P-0021577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	80	592	1	ENST00000301067.7:c.14710C>T	p.Arg4904Ter	p.R4904*	ENST00000301067	NM_003482.3	4904	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949665	151949665	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	124	592	0	ENST00000262189.6:c.1435C>T	p.Gln479Ter	p.Q479*	ENST00000262189	NM_170606.2	479	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0021597-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			332	32	333	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	158	872	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
NF1	4763	MSKCC	GRCh37	17	29657313	29657313	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	142	803	0	ENST00000358273.4:c.5610-1G>T		p.X1870_splice	ENST00000358273	NM_001042492.2	1870																																																																																
RPTOR	57521	MSKCC	GRCh37	17	78599548	78599548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	143	770	5	ENST00000306801.3:c.220G>A	p.Asp74Asn	p.D74N	ENST00000306801	NM_020761.2	74	Gat/Aat																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149457704	149457704	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	200	1048	1	ENST00000286301.3:c.700G>T	p.Asp234Tyr	p.D234Y	ENST00000286301	NM_005211.3	234	Gat/Tat																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859424	57859424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	76	706	1	ENST00000228682.2:c.569G>T	p.Cys190Phe	p.C190F	ENST00000228682	NM_005269.2	190	tGc/tTc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73337708	73337708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	55	351	0	ENST00000377767.4:c.2008G>T	p.Ala670Ser	p.A670S	ENST00000377767	NM_014953.3	670	Gcc/Tcc																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086205	16086205	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	102	628	1	ENST00000281043.3:c.1381G>T	p.Ala461Ser	p.A461S	ENST00000281043	NM_005378.4	461	Gct/Tct																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62324537	62324537	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	200	1246	0	ENST00000508582.2:c.2965G>C	p.Glu989Gln	p.E989Q	ENST00000508582		989	Gag/Cag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670483	134670483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	141	696	1	ENST00000398015.3:c.394G>T	p.Ala132Ser	p.A132S	ENST00000398015	NM_004441.4	132	Gcc/Tcc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664714	138664714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	73	247	1	ENST00000330315.3:c.851C>A	p.Pro284His	p.P284H	ENST00000330315	NM_023067.3	284	cCc/cAc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143159135	143159135	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	66	580	0	ENST00000262992.4:c.718A>G	p.Arg240Gly	p.R240G	ENST00000262992	NM_001101669.1	240	Aga/Gga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2952925	2952925	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	111	812	0	ENST00000396946.4:c.3015G>T	p.Lys1005Asn	p.K1005N	ENST00000396946	NM_032415.4	1005	aaG/aaT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874817	151874817	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	73	407	0	ENST00000262189.6:c.7721T>A	p.Phe2574Tyr	p.F2574Y	ENST00000262189	NM_170606.2	2574	tTc/tAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	204	785	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0021631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	88	763	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	166	980	7	ENST00000261937.6:c.1267dupC	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																															
CDH1	999	MSKCC	GRCh37	16	68849462	68849462	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	171	835	0	ENST00000261769.5:c.1365del	p.Val456Ter	p.V456*	ENST00000261769	NM_004360.3	455	gcA/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	135	745	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0021803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	95	585	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0021803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	81	438	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225940	2225940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	98	821	0	ENST00000326181.6:c.1732G>A	p.Glu578Lys	p.E578K	ENST00000326181	NM_032271.2	578	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	62	304	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0021803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	93	643	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146132	38146132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	224	792	2	ENST00000317025.8:c.3374C>T	p.Pro1125Leu	p.P1125L	ENST00000317025	NM_023034.1	1125	cCg/cTg																																																																															
AXL	558	MSKCC	GRCh37	19	41727829	41727829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	215	874	5	ENST00000301178.4:c.454G>A	p.Ala152Thr	p.A152T	ENST00000301178	NM_021913.4	152	Gcc/Acc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389318	8389318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	83	763	2	ENST00000356435.5:c.4300G>A	p.Glu1434Lys	p.E1434K	ENST00000356435		1434	Gaa/Aaa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786197	3786198	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0021853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	64	634	0	ENST00000262367.5:c.4567_4568delTT	p.Phe1523GlnfsTer5	p.F1523Qfs*5	ENST00000262367	NM_004380.2	1523	TTc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578249	7578250	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	172	740	0	ENST00000269305.4:c.599dupA	p.Asn200LysfsTer9	p.N200Kfs*9	ENST00000269305	NM_001126112.2	200	aat/aaAt																																																																															
KDR	3791	MSKCC	GRCh37	4	55960974	55960976	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0021853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	63	545	0	ENST00000263923.4:c.2964_2966delAGA	p.Glu990del	p.E990del	ENST00000263923	NM_002253.2	988	gaAGAg/gag																																																																															
TET2	54790	MSKCC	GRCh37	4	106197453	106197453	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	54	352	0	ENST00000380013.4:c.5786A>T	p.Glu1929Val	p.E1929V	ENST00000380013	NM_001127208.2	1929	gAg/gTg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	63	440	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125514528	125514528	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	32	480	0	ENST00000428830.2:c.1223G>T	p.Cys408Phe	p.C408F	ENST00000428830	NM_001114121.2	408	tGt/tTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992835	72992835	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	86	621	0	ENST00000268489.5:c.1210G>C	p.Gly404Arg	p.G404R	ENST00000268489	NM_006885.3	404	Ggc/Cgc																																																																															
NF1	4763	MSKCC	GRCh37	17	29550487	29550487	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	79	479	0	ENST00000358273.4:c.1747A>T	p.Lys583Ter	p.K583*	ENST00000358273	NM_001042492.2	583	Aag/Tag																																																																															
NF1	4763	MSKCC	GRCh37	17	29652876	29652876	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	73	396	0	ENST00000358273.4:c.4874del	p.Tyr1625SerfsTer5	p.Y1625Sfs*5	ENST00000358273	NM_001042492.2	1625	tAc/tc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120212	70120212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	116	771	2	ENST00000245479.2:c.1214G>T	p.Ser405Ile	p.S405I	ENST00000245479	NM_000346.3	405	aGc/aTc																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313152	30313153	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	94	735	3	ENST00000262643.3:c.846_847delinsCT	p.Leu282_Asp283delinsPheTyr	p.L282_D283delinsFY	ENST00000262643	NM_001238.2	282	ttGGat/ttCTat																																																																															
RAF1	5894	MSKCC	GRCh37	3	12641211	12641211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	100	655	1	ENST00000251849.4:c.1087G>A	p.Val363Ile	p.V363I	ENST00000251849	NM_002880.3	363	Gtt/Att																																																																															
BCL6	604	MSKCC	GRCh37	3	187446891	187446891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	49	908	1	ENST00000232014.4:c.1302C>A	p.Ser434Arg	p.S434R	ENST00000232014	NM_001130845.1	434	agC/agA																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1952907	1952907	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	106	783	0	ENST00000382891.5:c.1990G>T	p.Ala664Ser	p.A664S	ENST00000382891	NM_133335.3	664	Gcc/Tcc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497343	149497343	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	119	756	0	ENST00000261799.4:c.2975del	p.Leu992CysfsTer53	p.L992Cfs*53	ENST00000261799	NM_002609.3	992	tTg/tg																																																																															
TEK	7010	MSKCC	GRCh37	9	27220063	27220063	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	115	726	0	ENST00000380036.4:c.3120C>A	p.Cys1040Ter	p.C1040*	ENST00000380036	NM_000459.3	1040	tgC/tgA																																																																															
ATRX	546	MSKCC	GRCh37	X	76940004	76940004	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	125	837	0	ENST00000373344.5:c.744del	p.Gly249ValfsTer8	p.G249Vfs*8	ENST00000373344	NM_000489.3	248	ctT/ct																																																																															
XIAP	331	MSKCC	GRCh37	X	123040881	123040881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	105	787	1	ENST00000355640.3:c.1344G>T	p.Lys448Asn	p.K448N	ENST00000355640		448	aaG/aaT																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591826	48591826	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	38	578	1	ENST00000342988.3:c.989A>T	p.Glu330Val	p.E330V	ENST00000342988	NM_005359.5	330	gAa/gTa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0021889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	26	606	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928072	178928098	+	inframe_deletion	In_Frame_Del	DEL	TGGATTAGAAGATTTGCTGAACCCTAT	TGGATTAGAAGATTTGCTGAACCCTAT	-			P-0021889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	40	677	0	ENST00000263967.3:c.1353_1379del	p.Leu452_Gly460del	p.L452_G460del	ENST00000263967	NM_006218.2	450	caTGGATTAGAAGATTTGCTGAACCCTATt/cat																																																																															
PLK2	10769	MSKCC	GRCh37	5	57754320	57754320	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	42	540	0	ENST00000274289.3:c.531G>C	p.Leu177Phe	p.L177F	ENST00000274289	NM_006622.3	177	ttG/ttC																																																																															
MGA	23269	MSKCC	GRCh37	15	42034909	42034932	+	inframe_deletion	In_Frame_Del	DEL	CTGAGCCAGTTCAGGTGTGCAGCC	CTGAGCCAGTTCAGGTGTGCAGCC	-			P-0021889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	11	665	0	ENST00000219905.7:c.4754_4777del	p.Glu1585_Pro1592del	p.E1585_P1592del	ENST00000219905	NM_001164273.1	1584	tCTGAGCCAGTTCAGGTGTGCAGCCct/tct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577560	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0021889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	43	805	0	ENST00000269305.4:c.721_722del	p.Ser241LeufsTer22	p.S241Lfs*22	ENST00000269305	NM_001126112.2	241	TCc/c																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38275810	38275810	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	18	692	0	ENST00000425967.3:c.1459A>T	p.Met487Leu	p.M487L	ENST00000425967	NM_001174067.1	487	Atg/Ttg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39237845	39237845	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0021937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	86	561	0	ENST00000402219.2:c.2391-1G>A		p.X797_splice	ENST00000402219	NM_005633.3	797																																																																																
SETD2	29072	MSKCC	GRCh37	3	47163405	47163405	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	125	463	0	ENST00000409792.3:c.2721delT	p.Leu908TrpfsTer5	p.L908Wfs*5	ENST00000409792	NM_014159.6	907	gtT/gt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	285	489	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115435	115115437	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0021970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	100	536	0	ENST00000257566.3:c.889_891del	p.Asn297del	p.N297del	ENST00000257566	NM_016569.3	297	AAC/-																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112112	115112119	+	frameshift_variant	Frame_Shift_Del	DEL	AGGAGGGG	AGGAGGGG	-			P-0021970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	97	598	0	ENST00000257566.3:c.1621_1628del	p.Pro541GlyfsTer148	p.P541Gfs*148	ENST00000257566	NM_016569.3	541	CCCCTCCTg/g																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644926	67644926	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	110	512	0	ENST00000264010.4:c.192del	p.Glu64AspfsTer10	p.E64Dfs*10	ENST00000264010	NM_006565.3	64	gAa/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	146	543	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0022021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	188	580	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	129	466	0	ENST00000263967.3:c.3132T>A	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061205	38061205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	136	450	0	ENST00000250448.2:c.784C>T	p.Arg262Cys	p.R262C	ENST00000250448	NM_004496.3	262	Cgc/Tgc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37035132	37035132	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	98	370	0	ENST00000231790.2:c.94A>G	p.Ile32Val	p.I32V	ENST00000231790	NM_000249.3	32	Atc/Gtc																																																																															
NF1	4763	MSKCC	GRCh37	17	29657375	29657375	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	368	690	0	ENST00000358273.4:c.5671C>T	p.Gln1891Ter	p.Q1891*	ENST00000358273	NM_001042492.2	1891	Cag/Tag																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231771	36231774	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TTCG	TTCG	-			P-0022021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	223	642	1	ENST00000300305.3:c.610_613del	p.Arg204AspfsTer6	p.R204Dfs*6	ENST00000300305		204	CGAAga/ga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936103	178936103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	163	661	0	ENST00000263967.3:c.1645G>C	p.Asp549His	p.D549H	ENST00000263967	NM_006218.2	549	Gat/Cat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160531	56160558	+	splice_region_variant,intron_variant	Splice_Region	DEL	ACGTACCTAATAAAAAAAAATGTTGTGA	ACGTACCTAATAAAAAAAAATGTTGTGA	G			P-0022021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	66	179	0	ENST00000399503.3:c.835-30_835-3delinsG		p.X279_splice	ENST00000399503	NM_005921.1	279																																																																																
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0022024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	350	732	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0022024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	158	667	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575102	48575102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	78	556	2	ENST00000342988.3:c.296G>A	p.Trp99Ter	p.W99*	ENST00000342988	NM_005359.5	99	tGg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	56	666	0	ENST00000269305.4:c.537T>G	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caG																																																																															
APC	324	MSKCC	GRCh37	5	112173377	112173377	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	32	463	1	ENST00000257430.4:c.2086G>T	p.Glu696Ter	p.E696*	ENST00000257430	NM_000038.5	696	Gaa/Taa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117909	70117911	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0022050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	41	523	0	ENST00000245479.2:c.378_380del	p.Gln126_Tyr127delinsHis	p.Q126_Y127delinsH	ENST00000245479	NM_000346.3	126	cAGTac/cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	57	685	0	ENST00000269305.4:c.569del	p.Pro190LeufsTer57	p.P190Lfs*57	ENST00000269305	NM_001126112.2	190	cCt/ct																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31369165	31369165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	20	581	0	ENST00000328111.2:c.149G>A	p.Arg50Lys	p.R50K	ENST00000328111	NM_006892.3	50	aGa/aAa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964448	70964448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	31	646	1	ENST00000276594.2:c.1580C>A	p.Ala527Glu	p.A527E	ENST00000276594	NM_024504.3	527	gCa/gAa																																																																															
ERG	2078	MSKCC	GRCh37	21	39817388	39817388	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	13	598	1	ENST00000288319.7:c.175C>T	p.Gln59Ter	p.Q59*	ENST00000288319	NM_182918.3	59	Caa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	244	413	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061250	38061250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	132	756	0	ENST00000250448.2:c.739C>T	p.His247Tyr	p.H247Y	ENST00000250448	NM_004496.3	247	Cac/Tac																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52662954	52662954	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	138	540	1	ENST00000394830.3:c.1399T>A	p.Ser467Thr	p.S467T	ENST00000394830	NM_018313.4	467	Tca/Aca																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177872	56177873	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0022115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	97	415	0	ENST00000399503.3:c.2846_2847del	p.Thr949ArgfsTer54	p.T949Rfs*54	ENST00000399503	NM_005921.1	949	ACa/a																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189432	56189433	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTAGAAC			P-0022115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	202	636	0	ENST00000399503.3:c.4467_4473dup	p.Gln1492ArgfsTer33	p.Q1492Rfs*33	ENST00000399503	NM_005921.1	1488	-/TTAGAAC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0022138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1237	160	994	1	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346338	73346338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	42	707	0	ENST00000377767.4:c.1462G>A	p.Asp488Asn	p.D488N	ENST00000377767	NM_014953.3	488	Gat/Aat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591937	48591937	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	67	632	0	ENST00000342988.3:c.1100T>C	p.Leu367Pro	p.L367P	ENST00000342988	NM_005359.5	367	cTc/cCc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0022141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	119	801	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	240	539	1	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0022141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	293	948	4	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
PDCD1	5133	MSKCC	GRCh37	2	242793340	242793340	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201540918		P-0022141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	72	1262	1	ENST00000334409.5:c.737C>T	p.Thr246Met	p.T246M	ENST00000334409	NM_005018.2	246	aCg/aTg																																																																															
RHEB	6009	MSKCC	GRCh37	7	151188085	151188085	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867628277		P-0022141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	315	700	3	ENST00000262187.5:c.68C>T	p.Thr23Met	p.T23M	ENST00000262187	NM_005614.3	23	aCg/aTg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176118212	176118212	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0022141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	31	522	0	ENST00000367669.3:c.763-2A>G		p.X255_splice	ENST00000367669	NM_022457.5	255																																																																																
APC	324	MSKCC	GRCh37	5	112174469	112174470	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	65	402	0	ENST00000257430.4:c.3179dup	p.Gln1062ThrfsTer3	p.Q1062Tfs*3	ENST00000257430	NM_000038.5	1060	ata/aTta																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38279378	38279378	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	46	1094	0	ENST00000425967.3:c.1111A>G	p.Thr371Ala	p.T371A	ENST00000425967	NM_001174067.1	371	Acg/Gcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	50	577	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0022155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	60	659	0	ENST00000269305.4:c.782+1G>C		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0022158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	517	760	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928226	178928226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	339	466	2	ENST00000263967.3:c.1412C>T	p.Pro471Leu	p.P471L	ENST00000263967	NM_006218.2	471	cCa/cTa																																																																															
RB1	5925	MSKCC	GRCh37	13	48954222	48954222	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0022158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	66	429	0	ENST00000267163.4:c.1421+2T>C		p.X474_splice	ENST00000267163	NM_000321.2	474																																																																																
PPP4R2	151987	MSKCC	GRCh37	3	73114760	73114760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	41	169	1	ENST00000356692.5:c.1141G>A	p.Glu381Lys	p.E381K	ENST00000356692		381	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952085	+	missense_variant	Missense_Mutation	DNP	CA	CA	TG			P-0022158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	313	441	1	ENST00000263967.3:c.3139_3140inv	p.His1047Cys	p.H1047C	ENST00000263967	NM_006218.2	1047	CAt/TGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177807	56177807	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	145	370	1	ENST00000399503.3:c.2782del	p.Ser928LeufsTer9	p.S928Lfs*9	ENST00000399503	NM_005921.1	927	aTt/at																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189392	56189393	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0022158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	318	673	0	ENST00000399503.3:c.4426_4427del	p.His1476PhefsTer46	p.H1476Ffs*46	ENST00000399503	NM_005921.1	1475	tCA/t																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523169	176523169	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	434	686	3	ENST00000292408.4:c.1933A>G	p.Lys645Glu	p.K645E	ENST00000292408	NM_213647.1	645	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	217	817	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0022171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	171	763	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593520	48593520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	48	316	0	ENST00000342988.3:c.1271A>T	p.Asp424Val	p.D424V	ENST00000342988	NM_005359.5	424	gAt/gTt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1959713	1959713	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs548600548		P-0022171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	82	395	0	ENST00000382895.3:c.2935C>T	p.Arg979Ter	p.R979*	ENST00000382895	NM_133330.2	979	Cga/Tga																																																																															
HGF	3082	MSKCC	GRCh37	7	81359091	81359091	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	34	386	0	ENST00000222390.5:c.870C>A	p.Asp290Glu	p.D290E	ENST00000222390	NM_000601.4	290	gaC/gaA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	65	637	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	91	634	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs764146326		P-0022174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	82	838	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023066	27023067	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0022174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	11	121	0	ENST00000324856.7:c.172_173del	p.Ser58ArgfsTer52	p.S58Rfs*52	ENST00000324856	NM_006015.4	58	AGc/c																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101427	27101427	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	71	613	0	ENST00000324856.7:c.4709C>G	p.Ser1570Cys	p.S1570C	ENST00000324856	NM_006015.4	1570	tCt/tGt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098795	47098795	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	111	803	1	ENST00000409792.3:c.6479del	p.Pro2160ArgfsTer88	p.P2160Rfs*88	ENST00000409792	NM_014159.6	2160	cCg/cg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324681	31324681	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	60	436	0	ENST00000412585.2:c.127G>T	p.Glu43Ter	p.E43*	ENST00000412585	NM_005514.6	43	Gag/Tag																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004331	150004331	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	78	567	0	ENST00000253339.5:c.1894C>T	p.Gln632Ter	p.Q632*	ENST00000253339		632	Caa/Taa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522422	157522422	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	77	797	0	ENST00000346085.5:c.4694A>T	p.Asn1565Ile	p.N1565I	ENST00000346085	NM_020732.3	1565	aAc/aTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151835937	151835937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	64	653	0	ENST00000262189.6:c.14587G>A	p.Glu4863Lys	p.E4863K	ENST00000262189	NM_170606.2	4863	Gag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151846224	151846224	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0022174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	65	530	0	ENST00000262189.6:c.12788C>G	p.Ser4263Ter	p.S4263*	ENST00000262189	NM_170606.2	4263	tCa/tGa																																																																															
AR	367	MSKCC	GRCh37	X	66766134	66766135	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCCCAC			P-0022174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	61	629	0	ENST00000374690.3:c.1147_1152dup	p.Pro383_His384dup	p.P383_H384dup	ENST00000374690	NM_000044.3	383	-/CCCCAC																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10267112	10267114	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0022181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	58	887	0	ENST00000340748.4:c.1304_1306del	p.Phe435del	p.F435del	ENST00000340748		435	tTTTct/tct																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374963	149374963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	191	1215	1	ENST00000360632.3:c.131G>A	p.Arg44Gln	p.R44Q	ENST00000360632	NM_015472.4	44	cGg/cAg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430553	78430554	+	splice_donor_variant	Splice_Site	DEL	AC	AC	T			P-0022181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	90	565	0	ENST00000370768.2:c.735+1_735+2delinsA		p.X245_splice	ENST00000370768	NM_003902.3	245																																																																																
IRS2	8660	MSKCC	GRCh37	13	110436828	110436828	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	103	815	0	ENST00000375856.3:c.1573G>C	p.Ala525Pro	p.A525P	ENST00000375856	NM_003749.2	525	Gcg/Ccg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149511631	149511631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	183	630	0	ENST00000261799.4:c.1154G>A	p.Arg385His	p.R385H	ENST00000261799	NM_002609.3	385	cGc/cAc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23640533	23640533	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	335	693	0	ENST00000261584.4:c.2578G>C	p.Glu860Gln	p.E860Q	ENST00000261584	NM_024675.3	860	Gag/Cag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37673810	37673810	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0022252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	652	572	0	ENST00000447079.4:c.2963+1G>C		p.X988_splice	ENST00000447079	NM_015083.1	988																																																																																
TMPRSS2	7113	MSKCC	GRCh37	21	42839681	42839682	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTCC			P-0022252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	375	712	0	ENST00000398585.3:c.1554_1557dup	p.Trp520GlyfsTer40	p.W520Gfs*40	ENST00000398585	NM_001135099.1	519	-/GGAC																																																																															
SYK	6850	MSKCC	GRCh37	9	93626922	93626922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	68	638	0	ENST00000375746.1:c.769G>A	p.Val257Ile	p.V257I	ENST00000375746	NM_001174167.1	257	Gtc/Atc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0022255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	14	323	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0022255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	15	474	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0022255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	28	498	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																															
ATRX	546	MSKCC	GRCh37	X	76931731	76931731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	40	206	0	ENST00000373344.5:c.3799C>T	p.Pro1267Ser	p.P1267S	ENST00000373344	NM_000489.3	1267	Cct/Tct																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561327	9561327	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	19	584	0	ENST00000353224.5:c.455A>G	p.Tyr152Cys	p.Y152C	ENST00000353224	NM_177990.2	152	tAt/tGt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437818	52437818	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0022289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	88	796	1	ENST00000460680.1:c.1343T>A	p.Leu448Ter	p.L448*	ENST00000460680	NM_004656.3	448	tTg/tAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0022303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	113	586	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640758	3640758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	110	601	0	ENST00000294008.3:c.2881C>T	p.Pro961Ser	p.P961S	ENST00000294008	NM_032444.2	961	Cct/Tct																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56493607	56493660	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACCTATCGATATAGAGAGAGAGTGGGCCTGGAATAGCCCCTGGGCCAGAGCCC	CACCTATCGATATAGAGAGAGAGTGGGCCTGGAATAGCCCCTGGGCCAGAGCCC	-			P-0022310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	70	304	0	ENST00000267101.3:c.2938-13_2978del		p.X980_splice	ENST00000267101	NM_001982.3	980																																																																																
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0022313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	196	825	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																															
MTOR	2475	MSKCC	GRCh37	1	11199365	11199365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	66	495	1	ENST00000361445.4:c.5126G>A	p.Arg1709His	p.R1709H	ENST00000361445	NM_004958.3	1709	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711958	89711958	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	73	526	0	ENST00000371953.3:c.576del	p.Leu193CysfsTer6	p.L193Cfs*6	ENST00000371953	NM_000314.4	192	gcA/gc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115801	8115801	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	120	649	0	ENST00000346208.3:c.1147G>C	p.Glu383Gln	p.E383Q	ENST00000346208		383	Gag/Cag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342776	118342776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	27	293	0	ENST00000534358.1:c.902G>A	p.Arg301Gln	p.R301Q	ENST00000534358	NM_005933.3	301	cGa/cAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32915155	32915155	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	26	657	1	ENST00000380152.3:c.6663C>G	p.Asn2221Lys	p.N2221K	ENST00000380152		2221	aaC/aaG																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827756	72827756	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	36	563	0	ENST00000268489.5:c.8825A>G	p.Asp2942Gly	p.D2942G	ENST00000268489	NM_006885.3	2942	gAt/gGt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15989672	15989682	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGTGGCCT	GGCGGTGGCCT	-			P-0022313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	83	393	0	ENST00000268712.3:c.3091_3101del	p.Arg1031ProfsTer36	p.R1031Pfs*36	ENST00000268712	NM_006311.3	1031	AGGCCACCGCCc/c																																																																															
ALK	238	MSKCC	GRCh37	2	29754828	29754828	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	77	505	0	ENST00000389048.3:c.1107C>A	p.Asn369Lys	p.N369K	ENST00000389048	NM_004304.4	369	aaC/aaA																																																																															
XPO1	7514	MSKCC	GRCh37	2	61715845	61715846	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0022313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	97	606	0	ENST00000401558.2:c.2083_2084del	p.Asn695CysfsTer24	p.N695Cfs*24	ENST00000401558	NM_003400.3	695	AAt/t																																																																															
APC	324	MSKCC	GRCh37	5	112170737	112170741	+	frameshift_variant	Frame_Shift_Del	DEL	TGCAC	TGCAC	-			P-0022313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	59	653	0	ENST00000257430.4:c.1834_1838del	p.Ala612CysfsTer20	p.A612Cfs*20	ENST00000257430	NM_000038.5	611	ggTGCACtt/ggtt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38146975	38146976	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0022313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	85	977	0	ENST00000317025.8:c.3166_3167del	p.Glu1056LysfsTer2	p.E1056Kfs*2	ENST00000317025	NM_023034.1	1056	GAa/a																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	199	755	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																															
ETV1	2115	MSKCC	GRCh37	7	13978868	13978868	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	224	506	0	ENST00000405192.2:c.239C>A	p.Ala80Asp	p.A80D	ENST00000405192	NM_001163147.1	80	gCt/gAt																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123325081	123325081	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	134	845	0	ENST00000358487.5:c.247A>G	p.Asn83Asp	p.N83D	ENST00000358487	NM_000141.4	83	Aat/Gat																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660594	227660594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	252	760	0	ENST00000305123.5:c.2861G>T	p.Trp954Leu	p.W954L	ENST00000305123	NM_005544.2	954	tGg/tTg																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056388	26056388	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	339	508	0	ENST00000343677.2:c.269A>C	p.Lys90Thr	p.K90T	ENST00000343677	NM_005319.3	90	aAg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0022343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	140	907	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0022353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	25	540	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214862	36214862	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	36	999	1	ENST00000222270.7:c.3288G>T	p.Glu1096Asp	p.E1096D	ENST00000222270	NM_014727.1	1096	gaG/gaT																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127915952	127915952	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	205	713	0	ENST00000373547.4:c.529C>T	p.Arg177Ter	p.R177*	ENST00000373547	NM_002721.4	177	Cga/Tga																																																																															
TSC2	7249	MSKCC	GRCh37	16	2107104	2107104	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0022376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	59	930	0	ENST00000219476.3:c.775-2A>G		p.X259_splice	ENST00000219476	NM_000548.3	259																																																																																
TP53	7157	MSKCC	GRCh37	17	7578541	7578542	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	753	1078	0	ENST00000269305.4:c.388_389insA	p.Leu130HisfsTer19	p.L130Hfs*19	ENST00000269305	NM_001126112.2	130	ctc/cAtc																																																																															
APC	324	MSKCC	GRCh37	5	112111356	112111357	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0022376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	111	389	0	ENST00000257430.4:c.454_455del	p.Glu152LysfsTer15	p.E152Kfs*15	ENST00000257430	NM_000038.5	151	gaAGaa/gaaa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2133751	2133752	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	A			P-0022376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	252	968	1	ENST00000219476.3:c.3939_3940delinsA	p.Pro1315GlnfsTer10	p.P1315Qfs*10	ENST00000219476	NM_000548.3	1313	gaGCcc/gaAcc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139397675	139397675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	199	934	0	ENST00000277541.6:c.5126T>C	p.Leu1709Pro	p.L1709P	ENST00000277541	NM_017617.3	1709	cTg/cCg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949104	71949104	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	224	873	0	ENST00000298229.2:c.3571G>C	p.Gly1191Arg	p.G1191R	ENST00000298229	NM_001567.3	1191	Ggg/Cgg																																																																															
SESN3	143686	MSKCC	GRCh37	11	94910989	94910989	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	124	1016	1	ENST00000536441.1:c.1141A>T	p.Met381Leu	p.M381L	ENST00000536441	NM_144665.3	381	Atg/Ttg																																																																															
MGA	23269	MSKCC	GRCh37	15	42052721	42052722	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	97	776	1	ENST00000219905.7:c.7393dup	p.Thr2465AsnfsTer6	p.T2465Nfs*6	ENST00000219905	NM_001164273.1	2464	-/A																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788588	3788588	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	72	637	1	ENST00000262367.5:c.4366G>T	p.Gly1456Ter	p.G1456*	ENST00000262367	NM_004380.2	1456	Gga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3827649	3827649	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	57	688	0	ENST00000262367.5:c.2123del	p.Leu708ArgfsTer5	p.L708Rfs*5	ENST00000262367	NM_004380.2	708	cTg/cg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3843384	3843385	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0022410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	66	432	0	ENST00000262367.5:c.1216+2dup		p.X406_splice	ENST00000262367	NM_004380.2	406																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8499822	8499822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	222	670	1	ENST00000356435.5:c.2147G>A	p.Arg716His	p.R716H	ENST00000356435		716	cGc/cAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390880	139390881	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TCTCCACTCAGGAA			P-0022410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	231	1151	0	ENST00000277541.6:c.7297_7310dup	p.Glu2437AspfsTer3	p.E2437Dfs*3	ENST00000277541	NM_017617.3	2437	gag/gaTTCCTGAGTGGAGAg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395191	139395191	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	134	1321	0	ENST00000277541.6:c.5747A>G	p.Gln1916Arg	p.Q1916R	ENST00000277541	NM_017617.3	1916	cAg/cGg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399359	139399360	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0022410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	76	1169	0	ENST00000277541.6:c.4782_4783dup	p.Glu1595GlyfsTer22	p.E1595Gfs*22	ENST00000277541	NM_017617.3	1595	gag/gGGag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44733216	44733216	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0022410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	112	817	1	ENST00000377967.4:c.208A>T	p.Lys70Ter	p.K70*	ENST00000377967	NM_021140.2	70	Aag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0022424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	231	771	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7572926	7572929	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	GTCA	GTCA	-			P-0022424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	600	241	2	ENST00000269305.4:c.1180_*1del		p.*394*	ENST00000269305	NM_001126112.2	394																																																																																
PDGFRA	5156	MSKCC	GRCh37	4	55130059	55130059	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	243	724	0	ENST00000257290.5:c.593T>G	p.Phe198Cys	p.F198C	ENST00000257290	NM_006206.4	198	tTc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0022450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	31	913	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12037474	12037474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	12	549	0	ENST00000396373.4:c.1105C>T	p.Arg369Trp	p.R369W	ENST00000396373	NM_001987.4	369	Cgg/Tgg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453134	140453136	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0022450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	47	702	0	ENST00000288602.6:c.1799_1801del	p.Val600_Lys601delinsGlu	p.V600_K601delinsE	ENST00000288602	NM_004333.4	600	gTGAaa/gaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	70	716	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	103	959	0	ENST00000269305.4:c.1010G>C	p.Arg337Pro	p.R337P	ENST00000269305	NM_001126112.2	337	cGc/cCc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	54	738	2	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610285	10610285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	143	1123	1	ENST00000171111.5:c.425C>T	p.Thr142Met	p.T142M	ENST00000171111	NM_203500.1	142	aCg/aTg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	42	527	1	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356382	66356382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	41	771	0	ENST00000273854.3:c.1115G>T	p.Ser372Ile	p.S372I	ENST00000273854	NM_004439.5	372	aGt/aTt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120478211	120478211	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	61	679	0	ENST00000256646.2:c.3539A>T	p.Gln1180Leu	p.Q1180L	ENST00000256646	NM_024408.3	1180	cAg/cTg																																																																															
FH	2271	MSKCC	GRCh37	1	241667492	241667492	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	29	549	1	ENST00000366560.3:c.958G>T	p.Ala320Ser	p.A320S	ENST00000366560	NM_000143.3	320	Gct/Tct																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123325200	123325200	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	53	924	0	ENST00000358487.5:c.128A>T	p.Gln43Leu	p.Q43L	ENST00000358487	NM_000141.4	43	cAa/cTa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941285	71941285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	48	1044	1	ENST00000298229.2:c.1060G>A	p.Glu354Lys	p.E354K	ENST00000298229	NM_001567.3	354	Gag/Aag																																																																															
DIS3	22894	MSKCC	GRCh37	13	73345933	73345933	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs201039391		P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	50	628	0	ENST00000377767.4:c.1605G>T	p.Lys535Asn	p.K535N	ENST00000377767	NM_014953.3	535	aaG/aaT																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30108041	30108041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	64	953	0	ENST00000331968.5:c.766C>A	p.Pro256Thr	p.P256T	ENST00000331968	NM_002742.2	256	Cca/Aca																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119928	70119928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	35	735	0	ENST00000245479.2:c.930C>A	p.His310Gln	p.H310Q	ENST00000245479	NM_000346.3	310	caC/caA																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11094931	11094931	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	126	936	0	ENST00000344626.4:c.104C>A	p.Ser35Ter	p.S35*	ENST00000344626	NM_003072.3	35	tCg/tAg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276310	15276310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	111	1083	1	ENST00000263388.2:c.5684G>T	p.Arg1895Leu	p.R1895L	ENST00000263388	NM_000435.2	1895	cGc/cTc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281917	39281917	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	40	714	0	ENST00000402219.2:c.558A>T	p.Leu186Phe	p.L186F	ENST00000402219	NM_005633.3	186	ttA/ttT																																																																															
CUL3	8452	MSKCC	GRCh37	2	225343063	225343063	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	37	796	1	ENST00000264414.4:c.2030-1G>T		p.X677_splice	ENST00000264414	NM_003590.4	677																																																																																
PDCD1	5133	MSKCC	GRCh37	2	242793308	242793308	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	88	1118	0	ENST00000334409.5:c.769A>G	p.Met257Val	p.M257V	ENST00000334409	NM_005018.2	257	Atg/Gtg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873709	35873709	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	68	712	0	ENST00000303115.3:c.665C>A	p.Pro222Gln	p.P222Q	ENST00000303115	NM_002185.3	222	cCa/cAa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876121	35876121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	76	787	3	ENST00000303115.3:c.913G>T	p.Asp305Tyr	p.D305Y	ENST00000303115	NM_002185.3	305	Gac/Tac																																																																															
HGF	3082	MSKCC	GRCh37	7	81359075	81359075	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	48	659	0	ENST00000222390.5:c.886A>G	p.Thr296Ala	p.T296A	ENST00000222390	NM_000601.4	296	Act/Gct																																																																															
SMO	6608	MSKCC	GRCh37	7	128850853	128850853	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	97	1064	0	ENST00000249373.3:c.1700A>G	p.Lys567Arg	p.K567R	ENST00000249373	NM_005631.4	567	aAg/aGg																																																																															
SMO	6608	MSKCC	GRCh37	7	128850951	128850951	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	74	720	0	ENST00000249373.3:c.1798G>T	p.Val600Leu	p.V600L	ENST00000249373	NM_005631.4	600	Gtg/Ttg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205323	38205323	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	71	1409	0	ENST00000317025.8:c.367G>C	p.Glu123Gln	p.E123Q	ENST00000317025	NM_023034.1	123	Gaa/Caa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933439	39933439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	79	966	0	ENST00000378444.4:c.1160G>T	p.Arg387Met	p.R387M	ENST00000378444	NM_001123385.1	387	aGg/aTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70360548	70360548	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	50	969	0	ENST00000374080.3:c.6108G>T	p.Gln2036His	p.Q2036H	ENST00000374080		2036	caG/caT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			641	49	703	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0022461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	33	411	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482437	56482437	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			761	61	531	0	ENST00000267101.3:c.985A>G	p.Lys329Glu	p.K329E	ENST00000267101	NM_001982.3	329	Aaa/Gaa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99154351	99154351	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			695	44	484	0	ENST00000074304.5:c.494del	p.Asn165ThrfsTer4	p.N165Tfs*4	ENST00000074304	NM_001134224.1	165	Aac/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579410	7579410	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	603	618	0	ENST00000269305.4:c.277del	p.Leu93CysfsTer30	p.L93Cfs*30	ENST00000269305	NM_001126112.2	93	Ctg/tg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120478157	120478161	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTG	TTCTG	-			P-0022470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	450	413	0	ENST00000256646.2:c.3589_3593del	p.Gln1197TrpfsTer6	p.Q1197Wfs*6	ENST00000256646	NM_024408.3	1197	CAGAAt/t																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0022477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	126	340	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	46	307	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0022477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	125	525	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	36	380	0	ENST00000263967.3:c.333G>C	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7579413	7579413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	46	684	0	ENST00000269305.4:c.274C>T	p.Pro92Ser	p.P92S	ENST00000269305	NM_001126112.2	92	Ccc/Tcc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	76	1039	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600323	10600323	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0022505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	64	789	0	ENST00000171111.5:c.1531+1G>T		p.X511_splice	ENST00000171111	NM_203500.1	511																																																																																
CDH1	999	MSKCC	GRCh37	16	68772254	68772255	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0022518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	48	1214	0	ENST00000261769.5:c.106_107del	p.Ser36LeufsTer22	p.S36Lfs*22	ENST00000261769	NM_004360.3	35	GAg/g																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0022525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	96	763	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
MPL	4352	MSKCC	GRCh37	1	43814632	43814632	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	93	855	0	ENST00000372470.3:c.1427C>A	p.Ser476Ter	p.S476*	ENST00000372470	NM_005373.2	476	tCg/tAg																																																																															
FH	2271	MSKCC	GRCh37	1	241672019	241672020	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	116	748	0	ENST00000366560.3:c.621dup	p.Leu208ValfsTer9	p.L208Vfs*9	ENST00000366560	NM_000143.3	207	-/G																																																																															
SYK	6850	MSKCC	GRCh37	9	93607715	93607715	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0022525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	37	354	1	ENST00000375746.1:c.418-1G>A		p.X140_splice	ENST00000375746	NM_001174167.1	140																																																																																
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0022581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	37	678	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0022581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	28	367	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121913255		P-0022581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	104	745	0	ENST00000369535.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caC																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168682	32168682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	21	808	1	ENST00000375023.3:c.4241C>T	p.Ala1414Val	p.A1414V	ENST00000375023	NM_004557.3	1414	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			820	245	1359	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098964	178098975	+	inframe_deletion	In_Frame_Del	DEL	ATCTTGCCTCCA	ATCTTGCCTCCA	-			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			363	81	511	0	ENST00000397062.3:c.70_81del	p.Trp24_Asp27del	p.W24_D27del	ENST00000397062	NM_006164.4	24	TGGAGGCAAGAT/-																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485766	57485766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			584	41	612	0	ENST00000371085.3:c.1067G>A	p.Arg356His	p.R356H	ENST00000371085	NM_000516.4	356	cGt/cAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426181	49426181	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			859	100	970	2	ENST00000301067.7:c.12307C>T	p.Gln4103Ter	p.Q4103*	ENST00000301067	NM_003482.3	4103	Cag/Tag																																																																															
CDC73	79577	MSKCC	GRCh37	1	193181230	193181230	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			535	159	621	0	ENST00000367435.3:c.1066G>A	p.Gly356Arg	p.G356R	ENST00000367435	NM_024529.4	356	Gga/Aga																																																																															
RET	5979	MSKCC	GRCh37	10	43600477	43600477	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			857	233	1187	1	ENST00000355710.3:c.703G>T	p.Glu235Ter	p.E235*	ENST00000355710	NM_020975.4	235	Gag/Tag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18446874	18446874	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			636	123	771	0	ENST00000266497.5:c.959A>C	p.His320Pro	p.H320P	ENST00000266497		320	cAt/cCt																																																																															
NF1	4763	MSKCC	GRCh37	17	29556086	29556086	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			351	80	406	1	ENST00000358273.4:c.2453C>A	p.Ser818Tyr	p.S818Y	ENST00000358273	NM_001042492.2	818	tCc/tAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873027	134873027	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1185	132	1040	0	ENST00000398015.3:c.1331G>T	p.Ser444Ile	p.S444I	ENST00000398015	NM_004441.4	444	aGt/aTt																																																																															
KDR	3791	MSKCC	GRCh37	4	55968562	55968562	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			874	131	944	0	ENST00000263923.4:c.2101T>G	p.Phe701Val	p.F701V	ENST00000263923	NM_002253.2	701	Ttt/Gtt																																																																															
IRF4	3662	MSKCC	GRCh37	6	407462	407462	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			614	33	492	0	ENST00000380956.4:c.1220C>G	p.Pro407Arg	p.P407R	ENST00000380956	NM_001195286.1	407	cCt/cGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971178	21971179	+	stop_gained	Nonsense_Mutation	DNP	CG	CG	AT			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			569	143	871	1	ENST00000361570.3:c.345_346delinsAT	p.Gly116Ter	p.G116*	ENST00000361570	NM_058195.3	115	ggCGga/ggATga																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239846	98239846	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			906	123	1105	0	ENST00000331920.6:c.1486A>T	p.Asn496Tyr	p.N496Y	ENST00000331920	NM_000264.3	496	Aac/Tac																																																																															
AR	367	MSKCC	GRCh37	X	66765719	66765719	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1614	211	2025	0	ENST00000374690.3:c.731C>G	p.Ser244Trp	p.S244W	ENST00000374690	NM_000044.3	244	tCg/tGg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123184144	123184144	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			572	44	705	0	ENST00000218089.9:c.1002G>T	p.Trp334Cys	p.W334C	ENST00000218089	NM_001042749.1	334	tgG/tgT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	96	715	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PAX5	5079	MSKCC	GRCh37	9	36840607	36840607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	172	914	0	ENST00000358127.4:c.1126G>A	p.Ala376Thr	p.A376T	ENST00000358127	NM_001280556.1	376	Gcc/Acc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	208	784	2	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100550	8100550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs34363744		P-0022612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	162	915	1	ENST00000346208.3:c.524C>T	p.Ser175Leu	p.S175L	ENST00000346208		175	tCg/tTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952054	178952054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	92	443	0	ENST00000263967.3:c.3109G>A	p.Glu1037Lys	p.E1037K	ENST00000263967	NM_006218.2	1037	Gag/Aag																																																																															
TET1	80312	MSKCC	GRCh37	10	70332435	70332435	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	319	793	0	ENST00000373644.4:c.340C>T	p.Arg114Ter	p.R114*	ENST00000373644	NM_030625.2	114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174620	112174620	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0022612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	161	452	0	ENST00000257430.4:c.3329C>G	p.Ser1110Ter	p.S1110*	ENST00000257430	NM_000038.5	1110	tCa/tGa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138198246	138198246	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200840068		P-0022612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	50	448	2	ENST00000237289.4:c.839G>A	p.Arg280Gln	p.R280Q	ENST00000237289	NM_001270507.1	280	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576858	7576875	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGAAATATTCTCCAT	GGGTGAAATATTCTCCAT	A			P-0022612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	175	779	0	ENST00000269305.4:c.971_988delinsT	p.Asp324ValfsTer7	p.D324Vfs*7	ENST00000269305	NM_001126112.2	324	gATGGAGAATATTTCACCCtt/gTtt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	49	756	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0022675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	28	700	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891162	101891162	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	35	428	0	ENST00000374994.4:c.123T>G	p.Cys41Trp	p.C41W	ENST00000374994	NM_004612.2	41	tgT/tgG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	48	787	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0022756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	111	1068	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0022756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	93	747	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152009026	152009026	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	23	381	0	ENST00000262189.6:c.596del	p.Arg199HisfsTer7	p.R199Hfs*7	ENST00000262189	NM_170606.2	199	cGa/ca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	99	503	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118942	115118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	45	365	0	ENST00000257566.3:c.399T>A	p.Phe133Leu	p.F133L	ENST00000257566	NM_016569.3	133	ttT/ttA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0022817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	44	762	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	256	1089	2	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780956	9780956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	31	866	0	ENST00000377346.4:c.1678G>A	p.Asp560Asn	p.D560N	ENST00000377346	NM_005026.3	560	Gat/Aat																																																																															
JAK1	3716	MSKCC	GRCh37	1	65349077	65349077	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	145	1013	3	ENST00000342505.4:c.88G>T	p.Glu30Ter	p.E30*	ENST00000342505	NM_002227.2	30	Gag/Tag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	401923	401923	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0022824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	31	476	0	ENST00000399788.2:c.4866+2T>C		p.X1622_splice	ENST00000399788	NM_001042603.1	1622																																																																																
GNA11	2767	MSKCC	GRCh37	19	3119298	3119298	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	33	1215	0	ENST00000078429.4:c.830A>T	p.Asp277Val	p.D277V	ENST00000078429	NM_002067.2	277	gAc/gTc																																																																															
ROS1	6098	MSKCC	GRCh37	6	117665339	117665339	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	60	841	1	ENST00000368508.3:c.4408C>G	p.Leu1470Val	p.L1470V	ENST00000368508	NM_002944.2	1470	Ctg/Gtg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151864293	151864293	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	93	1014	0	ENST00000262189.6:c.9688G>C	p.Asp3230His	p.D3230H	ENST00000262189	NM_170606.2	3230	Gat/Cat																																																																															
ABL1	25	MSKCC	GRCh37	9	133730334	133730334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	152	878	2	ENST00000318560.5:c.400C>T	p.Arg134Cys	p.R134C	ENST00000318560	NM_005157.4	134	Cgc/Tgc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589655	69589655	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	110	196	0	ENST00000168712.1:c.198G>C	p.Glu66Asp	p.E66D	ENST00000168712	NM_002007.2	66	gaG/gaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	380	840	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0022921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	105	501	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0022921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	106	427	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440373	52440373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	159	691	0	ENST00000460680.1:c.679N>T	p.Arg227Cys	p.R227C	ENST00000460680	NM_004656.3	227	Cgc/Tgc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513309	44513309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	91	1006	0	ENST00000291552.4:c.626G>A	p.Arg209His	p.R209H	ENST00000291552	NM_006758.2	209	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112174119	112174119	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	113	484	1	ENST00000257430.4:c.2828C>A	p.Ser943Ter	p.S943*	ENST00000257430	NM_000038.5	943	tCa/tAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29679418	29679418	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	130	540	0	ENST00000358273.4:c.7601C>G	p.Thr2534Ser	p.T2534S	ENST00000358273	NM_001042492.2	2534	aCt/aGt																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598227	28598227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	259	1047	1	ENST00000253063.3:c.199C>A	p.Leu67Met	p.L67M	ENST00000253063	NM_031459.4	67	Ctg/Atg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67358699	67358699	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0022921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	221	481	0	ENST00000327367.4:c.206+1G>A		p.X69_splice	ENST00000327367	NM_005902.3	69																																																																																
SMAD2	4087	MSKCC	GRCh37	18	45374908	45374908	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	409	825	0	ENST00000262160.6:c.935G>C	p.Cys312Ser	p.C312S	ENST00000262160	NM_005901.5	312	tGc/tCc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942771	44942773	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0022921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	472	463	0	ENST00000377967.4:c.3354_3356del	p.Leu1119del	p.L1119del	ENST00000377967	NM_021140.2	1117	aaTCTt/aat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0022931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	401	604	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577064	7577064	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0022931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	205	789	1	ENST00000269305.4:c.874A>T	p.Lys292Ter	p.K292*	ENST00000269305	NM_001126112.2	292	Aaa/Taa																																																																															
MYCL1	4610	MSKCC	GRCh37	1	40366921	40366921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	47	687	0	ENST00000397332.2:c.276G>T	p.Glu92Asp	p.E92D	ENST00000397332	NM_001033082.2	92	gaG/gaT																																																																															
ACVR1	90	MSKCC	GRCh37	2	158626939	158626939	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	51	634	2	ENST00000263640.3:c.731C>A	p.Ser244Ter	p.S244*	ENST00000263640	NM_001105.4	244	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0022967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	395	798	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	257	421	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164602	36164617	+	frameshift_variant	Frame_Shift_Del	DEL	GCGAGCGCTCGCCGCC	GCGAGCGCTCGCCGCC	CT			P-0022967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	855	608	3	ENST00000300305.3:c.1258_1273delinsAG	p.Gly420SerfsTer175	p.G420Sfs*175	ENST00000300305		420	GGCGGCGAGCGCTCGCcg/AGcg																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027121	71027121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	211	537	0	ENST00000318789.4:c.1206C>G	p.Ser402Arg	p.S402R	ENST00000318789	NM_032682.5	402	agC/agG																																																																															
TERT	7015	MSKCC	GRCh37	5	1282583	1282583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	98	678	1	ENST00000310581.5:c.1730G>A	p.Arg577Gln	p.R577Q	ENST00000310581	NM_198253.2	577	cGg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151851369	151851369	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	205	557	0	ENST00000262189.6:c.12122delC	p.Pro4041LeufsTer42	p.P4041Lfs*42	ENST00000262189	NM_170606.2	4041	cCt/ct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0022974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	58	421	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56167804	56167805	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0022974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	77	569	0	ENST00000399503.3:c.1370_1371delCA	p.Thr457SerfsTer3	p.T457Sfs*3	ENST00000399503	NM_005921.1	457	ACa/a																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720649	89720649	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0022974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	45	283	0	ENST00000371953.3:c.802-2A>G		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56176991	56177009	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTTGGCCGCCTTTGTCT	TTCTTGGCCGCCTTTGTCT	-			P-0022974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	69	529	0	ENST00000399503.3:c.2262_2280del	p.Leu755Ter	p.L755*	ENST00000399503	NM_005921.1	754	cTTCTTGGCCGCCTTTGTCTt/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0022984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	489	769	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519922		P-0022984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	205	888	1	ENST00000397062.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000397062	NM_006164.4	79	Gag/Aag																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519704	176519704	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143108014		P-0022984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	211	838	1	ENST00000292408.4:c.976G>A	p.Glu326Lys	p.E326K	ENST00000292408	NM_213647.1	326	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023405	27023405	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	252	636	0	ENST00000324856.7:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000324856	NM_006015.4	171	Caa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444127	49444127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	487	870	1	ENST00000301067.7:c.3244G>T	p.Glu1082Ter	p.E1082*	ENST00000301067	NM_003482.3	1082	Gaa/Taa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609982	81609982	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	88	373	0	ENST00000298171.2:c.1580T>A	p.Met527Lys	p.M527K	ENST00000298171	NM_000369.2	527	aTg/aAg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639233	3639233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	270	956	0	ENST00000294008.3:c.4406C>T	p.Ser1469Phe	p.S1469F	ENST00000294008	NM_032444.2	1469	tCc/tTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499367	89499368	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0022984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	752	520	2	ENST00000336596.2:c.2537_2538delinsAA	p.Pro846Gln	p.P846Q	ENST00000336596	NM_005233.5	846	cCC/cAA																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151947020	151947021	+	missense_variant	Missense_Mutation	DNP	TC	TC	GT			P-0022984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	15	692	2	ENST00000262189.6:c.1753_1754delinsAC	p.Glu585Thr	p.E585T	ENST00000262189	NM_170606.2	585	GAa/ACa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69050700	69050701	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0022984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	128	767	2	ENST00000288368.4:c.4035_4036delinsTT	p.Leu1345_Glu1346delinsPheTer	p.L1345_E1346delinsF*	ENST00000288368	NM_024870.2	1345	ttGGaa/ttTTaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	163	720	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	235	821	2	ENST00000269305.4:c.314G>A	p.Gly105Asp	p.G105D	ENST00000269305	NM_001126112.2	105	gGc/gAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	91	425	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2124202	2124202	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	132	652	0	ENST00000219476.3:c.2357G>A	p.Arg786His	p.R786H	ENST00000219476	NM_000548.3	786	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112155044	112155044	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	C			P-0023011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	240	458	0	ENST00000257430.4:c.1312+3A>C		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0023021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	17	676	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576864	7576865	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	AA	AA	C			P-0023021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	47	834	0	ENST00000269305.4:c.981_982delinsG	p.Tyr327Ter	p.Y327*	ENST00000269305	NM_001126112.2	327	taTTtc/taGtc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	115	460	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	246	1245	2	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913476		P-0023048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	170	796	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25462012	25462012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	155	730	0	ENST00000264709.3:c.2395C>T	p.Pro799Ser	p.P799S	ENST00000264709	NM_175629.2	799	Ccc/Tcc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932558	39932558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	227	1155	2	ENST00000378444.4:c.2041C>T	p.Pro681Ser	p.P681S	ENST00000378444	NM_001123385.1	681	Cct/Tct																																																																															
APC	324	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	77	695	1	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs864622237		P-0023109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	160	849	0	ENST00000269305.4:c.700T>G	p.Tyr234Asp	p.Y234D	ENST00000269305	NM_001126112.2	234	Tac/Gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0023109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	238	681	1	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
APC	324	MSKCC	GRCh37	5	112175944	112175945	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0023109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	35	385	0	ENST00000257430.4:c.4655_4656del	p.Glu1552GlyfsTer6	p.E1552Gfs*6	ENST00000257430	NM_000038.5	1551	aaAGag/aaag																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112769049	112769049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	241	738	0	ENST00000369452.4:c.1328G>A	p.Gly443Asp	p.G443D	ENST00000369452	NM_007373.3	443	gGt/gAt																																																																															
POLE	5426	MSKCC	GRCh37	12	133215722	133215724	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0023109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	186	563	0	ENST00000320574.5:c.5539_5541del	p.Lys1847del	p.K1847del	ENST00000320574	NM_006231.2	1847	AAG/-																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210784	36210784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	324	1004	3	ENST00000222270.7:c.535C>T	p.Arg179Trp	p.R179W	ENST00000222270	NM_014727.1	179	Cgg/Tgg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2979543	2979543	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148083162		P-0023109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	175	682	1	ENST00000396946.4:c.704G>A	p.Arg235Gln	p.R235Q	ENST00000396946	NM_032415.4	235	cGg/cAg																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87317094	87317094	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	89	648	0	ENST00000277120.3:c.233G>T	p.Arg78Met	p.R78M	ENST00000277120		78	aGg/aTg																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	52	559	1	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	161	791	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	72	491	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	161	416	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37055939	37055939	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	160	422	0	ENST00000231790.2:c.694G>T	p.Gly232Ter	p.G232*	ENST00000231790	NM_000249.3	232	Gga/Tga																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469128	25469128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	151	889	1	ENST00000264709.3:c.1330G>A	p.Glu444Lys	p.E444K	ENST00000264709	NM_175629.2	444	Gag/Aag																																																																															
NF1	4763	MSKCC	GRCh37	17	29665144	29665144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	119	778	2	ENST00000358273.4:c.6806G>A	p.Arg2269His	p.R2269H	ENST00000358273	NM_001042492.2	2269	cGt/cAt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923087	39923087	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	67	816	6	ENST00000378444.4:c.3621delA	p.Lys1207AsnfsTer31	p.K1207Nfs*31	ENST00000378444	NM_001123385.1	1207	aaA/aa																																																																															
JUN	3725	MSKCC	GRCh37	1	59248633	59248634	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	137	1009	0	ENST00000371222.2:c.109_110delAG	p.Ser37HisfsTer69	p.S37Hfs*69	ENST00000371222	NM_002228.3	37	AGc/c																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	93	609	1	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	221	554	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	38	584	2	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120471739	120471739	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138832326		P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	95	633	0	ENST00000256646.2:c.3752G>A	p.Arg1251His	p.R1251H	ENST00000256646	NM_024408.3	1251	cGc/cAc																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981586	101981586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	55	351	0	ENST00000282441.5:c.7C>T	p.Pro3Ser	p.P3S	ENST00000282441	NM_001130145.2	3	Ccc/Tcc																																																																															
SDHB	6390	MSKCC	GRCh37	1	17354304	17354306	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	44	670	0	ENST00000375499.3:c.478_480del	p.Lys160del	p.K160del	ENST00000375499	NM_003000.2	160	AAG/-																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445124	49445124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	168	985	0	ENST00000301067.7:c.2342C>T	p.Ala781Val	p.A781V	ENST00000301067	NM_003482.3	781	gCt/gTt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885263	111885263	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	122	772	0	ENST00000341259.2:c.1151A>G	p.Asp384Gly	p.D384G	ENST00000341259	NM_005475.2	384	gAt/gGt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103506715	103506715	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	36	277	0	ENST00000355739.4:c.462del	p.Lys154AsnfsTer16	p.K154Nfs*16	ENST00000355739	NM_000123.3	153	gAa/ga																																																																															
DICER1	23405	MSKCC	GRCh37	14	95563045	95563045	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	55	303	0	ENST00000343455.3:c.4212del	p.Asp1405ThrfsTer23	p.D1405Tfs*23	ENST00000343455	NM_177438.2	1404	aaA/aa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729115	66729115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	115	820	2	ENST00000307102.5:c.323G>A	p.Arg108Gln	p.R108Q	ENST00000307102	NM_002755.3	108	cGg/cAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15964756	15964756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	155	721	3	ENST00000268712.3:c.5840C>T	p.Ala1947Val	p.A1947V	ENST00000268712	NM_006311.3	1947	gCg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211658	36211658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	93	644	0	ENST00000222270.7:c.1409G>A	p.Gly470Asp	p.G470D	ENST00000222270	NM_014727.1	470	gGc/gAc																																																																															
INHA	3623	MSKCC	GRCh37	2	220440151	220440151	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs140659175		P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	157	930	0	ENST00000243786.2:c.1004T>C	p.Met335Thr	p.M335T	ENST00000243786	NM_002191.3	335	aTg/aCg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662289	227662289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	125	721	0	ENST00000305123.5:c.1166C>T	p.Pro389Leu	p.P389L	ENST00000305123	NM_005544.2	389	cCg/cTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125266	47125266	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	122	631	0	ENST00000409792.3:c.6004A>G	p.Thr2002Ala	p.T2002A	ENST00000409792	NM_014159.6	2002	Aca/Gca																																																																															
MITF	4286	MSKCC	GRCh37	3	70005638	70005638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	106	669	0	ENST00000352241.4:c.970C>A	p.Arg324Ser	p.R324S	ENST00000352241	NM_198159.2	324	Cgc/Agc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205035	128205035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	117	842	0	ENST00000341105.2:c.406G>T	p.Gly136Cys	p.G136C	ENST00000341105	NM_032638.4	136	Ggc/Tgc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138403485	138403485	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	37	635	0	ENST00000289153.2:c.2297T>C	p.Val766Ala	p.V766A	ENST00000289153	NM_006219.2	766	gTt/gCt																																																																															
TP63	8626	MSKCC	GRCh37	3	189455575	189455575	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs147340040		P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	101	793	2	ENST00000264731.3:c.109C>T	p.Arg37Ter	p.R37*	ENST00000264731	NM_003722.4	37	Cga/Tga																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38953579	38953579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	57	496	0	ENST00000357387.3:c.2774C>T	p.Ala925Val	p.A925V	ENST00000357387	NM_152756.3	925	gCa/gTa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564417	86564417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	46	636	0	ENST00000274376.6:c.149C>A	p.Pro50His	p.P50H	ENST00000274376	NM_002890.2	50	cCt/cAt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187959	32187959	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	155	938	0	ENST00000375023.3:c.1262A>G	p.Gln421Arg	p.Q421R	ENST00000375023	NM_004557.3	421	cAg/cGg																																																																															
PIM1	5292	MSKCC	GRCh37	6	37138552	37138554	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	98	614	0	ENST00000373509.5:c.88_90del	p.Glu30del	p.E30del	ENST00000373509	NM_002648.3	29	aAGGag/aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873690	151873690	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	87	658	0	ENST00000262189.6:c.8848C>G	p.His2950Asp	p.H2950D	ENST00000262189	NM_170606.2	2950	Cat/Gat																																																																															
ABL1	25	MSKCC	GRCh37	9	133738369	133738369	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	39	601	0	ENST00000318560.5:c.769T>C	p.Tyr257His	p.Y257H	ENST00000318560	NM_005157.4	257	Tac/Cac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139440219	139440219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	26	120	0	ENST00000277541.6:c.20C>A	p.Pro7His	p.P7H	ENST00000277541	NM_017617.3	7	cCc/cAc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0023189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	174	687	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189466	56189467	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0023189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	61	687	0	ENST00000399503.3:c.4502_4503del	p.Glu1501AlafsTer21	p.E1501Afs*21	ENST00000399503	NM_005921.1	1500	AGa/a																																																																															
RXRA	6256	MSKCC	GRCh37	9	137309141	137309141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	178	944	3	ENST00000481739.1:c.748G>A	p.Val250Met	p.V250M	ENST00000481739	NM_002957.4	250	Gtg/Atg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112447	115112448	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTTTGTCCAGCCG			P-0023192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	441	794	0	ENST00000257566.3:c.1279_1292dup	p.Ser432GlyfsTer205	p.S432Gfs*205	ENST00000257566	NM_016569.3	431	gcg/gcCGGCTGGACAAAGCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0023195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	36	788	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57470685	57470685	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	40	419	0	ENST00000371085.3:c.158A>C	p.Lys53Thr	p.K53T	ENST00000371085	NM_000516.4	53	aAa/aCa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249457	153249457	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	53	797	0	ENST00000281708.4:c.1321C>G	p.Arg441Gly	p.R441G	ENST00000281708	NM_033632.3	441	Cgg/Ggg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0023207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	95	851	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120776	115120776	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	40	721	0	ENST00000257566.3:c.230C>G	p.Pro77Arg	p.P77R	ENST00000257566	NM_016569.3	77	cCg/cGg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120808	115120839	+	frameshift_variant	Frame_Shift_Del	DEL	ATCCATGATCGGCTTGGCCAGGGCGCCCGGCA	ATCCATGATCGGCTTGGCCAGGGCGCCCGGCA	-			P-0023226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	34	610	0	ENST00000257566.3:c.167_198del	p.Leu56ProfsTer44	p.L56Pfs*44	ENST00000257566	NM_016569.3	56	cTGCCGGGCGCCCTGGCCAAGCCGATCATGGAT/c																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252990	36252991	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACACCCCC			P-0023226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	49	528	0	ENST00000300305.3:c.371_372insGGGGGTGT	p.Pro125GlyfsTer11	p.P125Gfs*11	ENST00000300305		124	gtt/gtGGGGGTGTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0023276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	270	921	4	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905944	50905944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	189	961	1	ENST00000440232.2:c.916C>T	p.Arg306Cys	p.R306C	ENST00000440232	NM_002691.3	306	Cgc/Tgc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788651	3788651	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	181	705	0	ENST00000262367.5:c.4303G>T	p.Asp1435Tyr	p.D1435Y	ENST00000262367	NM_004380.2	1435	Gat/Tat																																																																															
PMS1	5378	MSKCC	GRCh37	2	190738308	190738308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	52	652	0	ENST00000441310.2:c.2560C>T	p.Leu854Phe	p.L854F	ENST00000441310	NM_000534.4	854	Ctt/Ttt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391330	139391331	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCA			P-0023320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	380	999	0	ENST00000277541.6:c.6857_6860dup	p.Ser2288GlyfsTer67	p.S2288Gfs*67	ENST00000277541	NM_017617.3	2287	ggc/ggTGGGc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942703	44942703	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0023320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	131	578	0	ENST00000377967.4:c.3285-2A>G		p.X1095_splice	ENST00000377967	NM_021140.2	1095																																																																																
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	34	942	1	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	45	635	0	ENST00000307102.5:c.171G>C	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaC																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31431749	31431749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	42	719	0	ENST00000344624.3:c.3079G>T	p.Gly1027Trp	p.G1027W	ENST00000344624		1027	Ggg/Tgg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138202218	138202218	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0023340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	49	660	0	ENST00000237289.4:c.2135C>G	p.Ser712Ter	p.S712*	ENST00000237289	NM_001270507.1	712	tCa/tGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0023350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	31	523	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115441	115115443	+	inframe_deletion	In_Frame_Del	DEL	GTC	GTC	-			P-0023350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	78	875	0	ENST00000257566.3:c.883_885delGAC	p.Asp295del	p.D295del	ENST00000257566	NM_016569.3	295	GAC/-																																																																															
CDH1	999	MSKCC	GRCh37	16	68842331	68842331	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	35	717	0	ENST00000261769.5:c.392C>G	p.Ser131Cys	p.S131C	ENST00000261769	NM_004360.3	131	tCc/tGc																																																																															
CDH1	999	MSKCC	GRCh37	16	68842340	68842396	+	protein_altering_variant	In_Frame_Del	DEL	GAATCCAAGCAGAATTGCTCACATTTCCCAACTCCTCTCCTGGCCTCAGAAGACAGA	GAATCCAAGCAGAATTGCTCACATTTCCCAACTCCTCTCCTGGCCTCAGAAGACAGA	AAAGCCAGG			P-0023350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	52	1008	5	ENST00000261769.5:c.401_457delinsAAAGCCAGG	p.Gly134_Lys153delinsGluSerGlnGlu	p.G134_K153delinsESQE	ENST00000261769	NM_004360.3	134	gGAATCCAAGCAGAATTGCTCACATTTCCCAACTCCTCTCCTGGCCTCAGAAGACAGAag/gAAAGCCAGGag																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004984	150004984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	45	583	0	ENST00000253339.5:c.1241G>A	p.Arg414Lys	p.R414K	ENST00000253339		414	aGa/aAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	81	833	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	41	573	0	ENST00000349496.5:c.1982G>A	p.Arg661Gln	p.R661Q	ENST00000349496	NM_001904.3	661	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578401	7578401	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147002414		P-0023354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	122	828	0	ENST00000269305.4:c.529C>T	p.Pro177Ser	p.P177S	ENST00000269305	NM_001126112.2	177	Ccc/Tcc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593397	48593397	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	62	432	0	ENST00000342988.3:c.1148T>A	p.Ile383Lys	p.I383K	ENST00000342988	NM_005359.5	383	aTa/aAa																																																																															
TERT	7015	MSKCC	GRCh37	5	1295211	1295211	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0023354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	35	453	1				ENST00000310581	NM_198253.2																																																																																	
KDM6A	7403	MSKCC	GRCh37	X	44929266	44929267	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAACAATGTG			P-0023354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	89	912	0	ENST00000377967.4:c.2367_2376dup	p.Gly793Ter	p.G793*	ENST00000377967	NM_021140.2	789	aat/aaTAACAATGTGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0023357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	100	313	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625159	69625159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	104	744	3	ENST00000334134.2:c.634C>T	p.Arg212Trp	p.R212W	ENST00000334134	NM_005247.2	212	Cgg/Tgg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78414854	78414854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	107	395	0	ENST00000370768.2:c.1912C>T	p.Pro638Ser	p.P638S	ENST00000370768	NM_003902.3	638	Cct/Tct																																																																															
CDH1	999	MSKCC	GRCh37	16	68849652	68849652	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	160	514	0	ENST00000261769.5:c.1555C>T	p.Gln519Ter	p.Q519*	ENST00000261769	NM_004360.3	519	Cag/Tag																																																																															
MEN1	4221	MSKCC	GRCh37	11	64571975	64571975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	253	726	0	ENST00000337652.1:c.1679G>A	p.Ser560Asn	p.S560N	ENST00000337652	NM_130803.2	560	aGt/aAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32968894	32968894	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	120	401	0	ENST00000380152.3:c.9325C>A	p.Leu3109Ile	p.L3109I	ENST00000380152		3109	Ctt/Att																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	198	726	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	211	846	0	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097836	8097836	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	190	729	0	ENST00000346208.3:c.218A>T	p.Gln73Leu	p.Q73L	ENST00000346208		73	cAg/cTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16265247	16265247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	171	626	0	ENST00000375759.3:c.10739C>A	p.Pro3580His	p.P3580H	ENST00000375759	NM_015001.2	3580	cCc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829584	72829585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	90	820	0	ENST00000268489.5:c.6996dup	p.Cys2333MetfsTer2	p.C2333Mfs*2	ENST00000268489	NM_006885.3	2332	-/A																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11169005	11169005	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	36	826	0	ENST00000344626.4:c.4499T>A	p.Leu1500His	p.L1500H	ENST00000344626	NM_003072.3	1500	cTc/cAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214163	36214163	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	287	891	1	ENST00000222270.7:c.2989A>T	p.Lys997Ter	p.K997*	ENST00000222270	NM_014727.1	997	Aag/Tag																																																																															
EP300	2033	MSKCC	GRCh37	22	41548281	41548281	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	139	494	0	ENST00000263253.7:c.3072del	p.Glu1025ArgfsTer34	p.E1025Rfs*34	ENST00000263253	NM_001429.3	1023	atA/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	16	901	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846308	156846308	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	246	989	2	ENST00000524377.1:c.1753delC	p.Leu585CysfsTer73	p.L585Cfs*73	ENST00000524377	NM_002529.3	583	cgC/cg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	642	953	0	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2494693	2494693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	272	909	1	ENST00000355716.4:c.833G>T	p.Gly278Val	p.G278V	ENST00000355716	NM_003820.2	278	gGg/gTg																																																																															
SDHC	6391	MSKCC	GRCh37	1	161326608	161326608	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	294	836	0	ENST00000367975.2:c.384del	p.Trp129GlyfsTer7	p.W129Gfs*7	ENST00000367975	NM_003001.3	128	aCc/ac																																																																															
PARP1	142	MSKCC	GRCh37	1	226553675	226553675	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	174	578	0	ENST00000366794.5:c.2485T>A	p.Tyr829Asn	p.Y829N	ENST00000366794	NM_001618.3	829	Tat/Aat																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63759948	63759948	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	82	368	0	ENST00000279873.7:c.601A>G	p.Ile201Val	p.I201V	ENST00000279873	NM_032199.2	201	Att/Gtt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118359457	118359457	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	185	508	0	ENST00000534358.1:c.4461G>T	p.Arg1487Ser	p.R1487S	ENST00000534358	NM_005933.3	1487	agG/agT																																																																															
CBL	867	MSKCC	GRCh37	11	119169145	119169145	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	119	724	1	ENST00000264033.4:c.2329C>A	p.Pro777Thr	p.P777T	ENST00000264033	NM_005188.3	777	Cca/Aca																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118824	115118824	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	549	719	0	ENST00000257566.3:c.517G>C	p.Ala173Pro	p.A173P	ENST00000257566	NM_016569.3	173	Gct/Cct																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680637	88680637	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	98	588	0	ENST00000360948.2:c.620G>A	p.Cys207Tyr	p.C207Y	ENST00000360948	NM_001012338.2	207	tGt/tAt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220371	1220371	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	249	747	0	ENST00000326873.7:c.465del		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10610311	10610311	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	369	1192	0	ENST00000171111.5:c.399G>T	p.Met133Ile	p.M133I	ENST00000171111	NM_203500.1	133	atG/atT																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264391	46264391	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	97	575	0	ENST00000371998.3:c.1438A>T	p.Ile480Phe	p.I480F	ENST00000371998		480	Atc/Ttc																																																																															
EP300	2033	MSKCC	GRCh37	22	41527633	41527634	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	ATGAGTAAGTTTGTGTCATCCTAATAACATGGTATTGGTTGTGTCAGTAAATGACATCTA			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	89	535	0	ENST00000263253.7:c.1525_1528+56dup		p.-508MSKFVSS**HGIGCVSK*HL	ENST00000263253	NM_001429.3	508	-/ATGAGTAAGTTTGTGTCATCCTAATAACATGGTATTGGTTGTGTCAGTAAATGACATCTA																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498496	89498496	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	141	393	0	ENST00000336596.2:c.2468G>T	p.Arg823Ile	p.R823I	ENST00000336596	NM_005233.5	823	aGa/aTa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046086	180046086	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	58	575	0	ENST00000261937.6:c.2785T>G	p.Phe929Val	p.F929V	ENST00000261937	NM_182925.4	929	Ttc/Gtc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945048	151945048	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	41	848	0	ENST00000262189.6:c.2471G>C	p.Gly824Ala	p.G824A	ENST00000262189	NM_170606.2	824	gGc/gCc																																																																															
ATRX	546	MSKCC	GRCh37	X	76953125	76953125	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	283	352	1	ENST00000373344.5:c.190-2A>T		p.X64_splice	ENST00000373344	NM_000489.3	64																																																																																
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	127	728	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	121	528	0	ENST00000263967.3:c.1034A>T	p.Asn345Ile	p.N345I	ENST00000263967	NM_006218.2	345	aAt/aTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	109	543	0	ENST00000342988.3:c.1610A>T	p.Asp537Val	p.D537V	ENST00000342988	NM_005359.5	537	gAc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398220	25398220	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	327	721	0	ENST00000256078.4:c.99T>A	p.Asp33Glu	p.D33E	ENST00000256078	NM_033360.2	33	gaT/gaA																																																																															
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	226	406	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437573	56437574	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	195	803	1	ENST00000407977.2:c.888dup	p.Asn297Ter	p.N297*	ENST00000407977		296	-/T																																																																															
ABL1	25	MSKCC	GRCh37	9	133760879	133760879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	205	984	0	ENST00000318560.5:c.3202G>A	p.Val1068Met	p.V1068M	ENST00000318560	NM_005157.4	1068	Gtg/Atg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251805	212251805	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	107	527	0	ENST00000342788.4:c.3254C>A	p.Thr1085Asn	p.T1085N	ENST00000342788	NM_005235.2	1085	aCt/aAt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38981967	38981967	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0023448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	122	573	0	ENST00000357387.3:c.753+2T>C		p.X251_splice	ENST00000357387	NM_152756.3	251																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0023464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	258	965	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
ATRX	546	MSKCC	GRCh37	X	76939673	76939674	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	140	1111	1	ENST00000373344.5:c.1074dupA	p.Leu359ThrfsTer3	p.L359Tfs*3	ENST00000373344	NM_000489.3	358	-/A																																																																															
SETD2	29072	MSKCC	GRCh37	3	47139519	47139519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	132	868	0	ENST00000409792.3:c.5068G>A	p.Gly1690Arg	p.G1690R	ENST00000409792	NM_014159.6	1690	Gga/Aga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118369223	118369223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	70	587	0	ENST00000534358.1:c.5941C>T	p.Arg1981Trp	p.R1981W	ENST00000534358	NM_005933.3	1981	Cgg/Tgg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28609796	28609796	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	224	753	0	ENST00000241453.7:c.1433T>C	p.Ile478Thr	p.I478T	ENST00000241453	NM_004119.2	478	aTc/aCc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435149	56435149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	265	825	0	ENST00000407977.2:c.1988C>T	p.Pro663Leu	p.P663L	ENST00000407977		663	cCc/cTc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198285196	198285196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	114	865	1	ENST00000335508.6:c.371G>T	p.Arg124Leu	p.R124L	ENST00000335508	NM_012433.2	124	cGg/cTg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643770	52643770	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	119	877	0	ENST00000394830.3:c.2126T>A	p.Ile709Asn	p.I709N	ENST00000394830	NM_018313.4	709	aTt/aAt																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001284	150001284	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	103	903	0	ENST00000253339.5:c.2320G>T	p.Asp774Tyr	p.D774Y	ENST00000253339		774	Gat/Tat																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87636347	87636347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	112	791	0	ENST00000277120.3:c.2512G>T	p.Gly838Cys	p.G838C	ENST00000277120		838	Ggc/Tgc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039372	47039372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	138	888	1	ENST00000329236.7:c.764G>T	p.Arg255Leu	p.R255L	ENST00000329236	NM_001204466.1	255	cGc/cTc																																																																															
XIAP	331	MSKCC	GRCh37	X	123034426	123034426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	55	669	0	ENST00000355640.3:c.1183G>A	p.Glu395Lys	p.E395K	ENST00000355640		395	Gaa/Aaa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934954	9934954	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	30	484	0	ENST00000330684.3:c.1336A>G	p.Thr446Ala	p.T446A	ENST00000330684	NM_001134407.1	446	Acc/Gcc																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52724365	52724365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	52	566	0	ENST00000322088.6:c.1497G>A	p.Met499Ile	p.M499I	ENST00000322088	NM_014225.5	499	atG/atA																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38273515	38273515	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	114	860	0	ENST00000425967.3:c.1820G>T	p.Arg607Leu	p.R607L	ENST00000425967	NM_001174067.1	607	cGg/cTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140501249	140501249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	57	752	0	ENST00000288602.6:c.823G>A	p.Glu275Lys	p.E275K	ENST00000288602	NM_004333.4	275	Gaa/Aaa																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206646616	206646616	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	125	960	0	ENST00000367120.3:c.46G>C	p.Gly16Arg	p.G16R	ENST00000367120	NM_014002.3	16	Ggg/Cgg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575473	64575473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	135	804	1	ENST00000337652.1:c.559G>T	p.Ala187Ser	p.A187S	ENST00000337652	NM_130803.2	187	Gcc/Tcc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77085399	77085399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	49	573	2	ENST00000356341.3:c.451G>A	p.Glu151Lys	p.E151K	ENST00000356341	NM_002576.4	151	Gag/Aag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18656271	18656271	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	70	691	0	ENST00000266497.5:c.2950G>T	p.Gly984Ter	p.G984*	ENST00000266497		984	Gga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445116	49445116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	116	739	0	ENST00000301067.7:c.2350G>A	p.Glu784Lys	p.E784K	ENST00000301067	NM_003482.3	784	Gag/Aag																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885460	111885460	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	85	608	0	ENST00000341259.2:c.1237C>A	p.His413Asn	p.H413N	ENST00000341259	NM_005475.2	413	Cac/Aac																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432200	121432200	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	92	716	0	ENST00000257555.6:c.947A>T	p.Lys316Met	p.K316M	ENST00000257555		316	aAg/aTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133237658	133237658	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	77	915	0	ENST00000320574.5:c.2957A>T	p.Gln986Leu	p.Q986L	ENST00000320574	NM_006231.2	986	cAa/cTa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527780	103527780	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	62	498	0	ENST00000355739.4:c.3088G>T	p.Ala1030Ser	p.A1030S	ENST00000355739	NM_000123.3	1030	Gca/Tca																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2094776	2094776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	67	861	0	ENST00000219066.1:c.404C>T	p.Ser135Leu	p.S135L	ENST00000219066	NM_002528.5	135	tCa/tTa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67662326	67662327	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	307	566	0	ENST00000264010.4:c.1573dup	p.Cys525LeufsTer6	p.C525Lfs*6	ENST00000264010	NM_006565.3	524	-/T																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40384139	40384139	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	104	573	0	ENST00000293328.3:c.7G>T	p.Val3Leu	p.V3L	ENST00000293328	NM_012448.3	3	Gtg/Ttg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244453	41244453	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	118	790	0	ENST00000357654.3:c.3095G>C	p.Arg1032Thr	p.R1032T	ENST00000357654	NM_007294.3	1032	aGa/aCa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214867	36214867	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	91	924	0	ENST00000222270.7:c.3293G>T	p.Gly1098Val	p.G1098V	ENST00000222270	NM_014727.1	1098	gGg/gTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223235	36223235	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	222	1185	0	ENST00000222270.7:c.5785G>T	p.Ala1929Ser	p.A1929S	ENST00000222270	NM_014727.1	1929	Gcc/Tcc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989623	212989623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	58	370	0	ENST00000342788.4:c.88G>T	p.Ala30Ser	p.A30S	ENST00000342788	NM_005235.2	30	Gca/Tca																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376116	225376116	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	149	900	0	ENST00000264414.4:c.838G>T	p.Glu280Ter	p.E280*	ENST00000264414	NM_003590.4	280	Gag/Tag																																																																															
CUL3	8452	MSKCC	GRCh37	2	225449678	225449678	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	69	527	0	ENST00000264414.4:c.49C>G	p.Arg17Gly	p.R17G	ENST00000264414	NM_003590.4	17	Cgg/Ggg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52443586	52443586	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	121	566	0	ENST00000460680.1:c.106C>T	p.Gln36Ter	p.Q36*	ENST00000460680	NM_004656.3	36	Cag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89499365	89499366	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	96	565	0	ENST00000336596.2:c.2535_2536delinsAA	p.Pro846Thr	p.P846T	ENST00000336596	NM_005233.5	845	ccCCcc/ccAAcc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138383941	138383941	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	132	705	0	ENST00000289153.2:c.2609T>C	p.Val870Ala	p.V870A	ENST00000289153	NM_006219.2	870	gTg/gCg																																																																															
TET2	54790	MSKCC	GRCh37	4	106180817	106180817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	78	473	0	ENST00000380013.4:c.3845G>T	p.Gly1282Val	p.G1282V	ENST00000380013	NM_001127208.2	1282	gGt/gTt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120525	94120525	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	40	646	0	ENST00000369303.4:c.526C>A	p.Pro176Thr	p.P176T	ENST00000369303	NM_004440.3	176	Cct/Act																																																																															
ESR1	2099	MSKCC	GRCh37	6	152201860	152201860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	80	619	0	ENST00000206249.3:c.714G>T	p.Gln238His	p.Q238H	ENST00000206249	NM_000125.3	238	caG/caT																																																																															
HGF	3082	MSKCC	GRCh37	7	81346669	81346669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	46	385	0	ENST00000222390.5:c.1284G>T	p.Trp428Cys	p.W428C	ENST00000222390	NM_000601.4	428	tgG/tgT																																																																															
CDK6	1021	MSKCC	GRCh37	7	92355085	92355085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	28	390	0	ENST00000265734.4:c.392G>A	p.Arg131Gln	p.R131Q	ENST00000265734	NM_001259.6	131	cGa/cAa																																																																															
SMO	6608	MSKCC	GRCh37	7	128848667	128848667	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	134	774	2	ENST00000249373.3:c.1332G>T	p.Lys444Asn	p.K444N	ENST00000249373	NM_005631.4	444	aaG/aaT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484218	8484218	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	126	760	1	ENST00000356435.5:c.3314C>A	p.Pro1105Gln	p.P1105Q	ENST00000356435		1105	cCa/cAa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87563491	87563491	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs201553907		P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	59	816	0	ENST00000277120.3:c.1879G>T	p.Asp627Tyr	p.D627Y	ENST00000277120		627	Gac/Tac																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209239	98209239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	64	843	0	ENST00000331920.6:c.4299G>T	p.Gln1433His	p.Q1433H	ENST00000331920	NM_000264.3	1433	caG/caT																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390623	139390623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	69	979	2	ENST00000277541.6:c.7568C>T	p.Ser2523Leu	p.S2523L	ENST00000277541	NM_017617.3	2523	tCg/tTg																																																																															
BTK	695	MSKCC	GRCh37	X	100612539	100612539	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	42	739	1	ENST00000308731.7:c.1135C>T	p.Gln379Ter	p.Q379*	ENST00000308731	NM_000061.2	379	Caa/Taa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864214	57864214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	33	639	0	ENST00000228682.2:c.1691C>T	p.Pro564Leu	p.P564L	ENST00000228682	NM_005269.2	564	cCt/cTt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836769	151836769	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	65	567	1	ENST00000262189.6:c.14451T>A	p.Tyr4817Ter	p.Y4817*	ENST00000262189	NM_170606.2	4817	taT/taA																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713441	30713441	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	30	679	0	ENST00000359013.4:c.841G>C	p.Ala281Pro	p.A281P	ENST00000359013	NM_001024847.2	281	Gct/Cct																																																																															
TET2	54790	MSKCC	GRCh37	4	106156540	106156540	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			432	39	425	0	ENST00000380013.4:c.1441C>T	p.Gln481Ter	p.Q481*	ENST00000380013	NM_001127208.2	481	Cag/Tag																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166280	118166280	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	86	413	0	ENST00000369448.3:c.793del	p.Thr265LeufsTer2	p.T265Lfs*2	ENST00000369448	NM_017709.3	264	Aaa/aa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343276	118343276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			433	64	418	0	ENST00000534358.1:c.1402C>T	p.His468Tyr	p.H468Y	ENST00000534358	NM_005933.3	468	Cac/Tac																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426782	121426782	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			579	53	683	0	ENST00000257555.6:c.473A>C	p.Lys158Thr	p.K158T	ENST00000257555		158	aAg/aCg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43769806	43769806	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			474	68	647	0	ENST00000382044.4:c.940C>T	p.Gln314Ter	p.Q314*	ENST00000382044	NM_001141980.1	314	Cag/Tag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530166	63530166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			526	105	558	1	ENST00000307078.5:c.2269C>T	p.His757Tyr	p.H757Y	ENST00000307078	NM_004655.3	757	Cac/Tac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223175	36223175	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	88	820	0	ENST00000222270.7:c.5725C>G	p.Pro1909Ala	p.P1909A	ENST00000222270	NM_014727.1	1909	Ccc/Gcc																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045687	26045687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	37	286	0	ENST00000540144.1:c.49C>T	p.Pro17Ser	p.P17S	ENST00000540144	NM_003531.2	17	Ccg/Tcg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11924280	11924280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			112	14	131	1	ENST00000353533.5:c.77C>T	p.Ser26Phe	p.S26F	ENST00000353533	NM_003010.3	26	tCc/tTc																																																																															
CBFB	865	MSKCC	GRCh37	16	67063321	67063321	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	128	440	0	ENST00000412916.2:c.11T>G	p.Val4Gly	p.V4G	ENST00000412916		4	gTc/gGc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0023676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	148	674	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0023679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	190	1021	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845366	151845366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	183	857	1	ENST00000262189.6:c.13646G>A	p.Arg4549His	p.R4549H	ENST00000262189	NM_170606.2	4549	cGc/cAc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061466	38061466	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	163	707	0	ENST00000250448.2:c.523T>A	p.Tyr175Asn	p.Y175N	ENST00000250448	NM_004496.3	175	Tac/Aac																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675074	40675074	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	199	909	0	ENST00000249776.8:c.38T>G	p.Phe13Cys	p.F13C	ENST00000249776	NM_033286.3	13	tTc/tGc																																																																															
CUL3	8452	MSKCC	GRCh37	2	225422410	225422410	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	147	898	0	ENST00000264414.4:c.230T>C	p.Leu77Pro	p.L77P	ENST00000264414	NM_003590.4	77	cTa/cCa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161230	56161230	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	153	771	0	ENST00000399503.3:c.1099del	p.Gln367AsnfsTer2	p.Q367Nfs*2	ENST00000399503	NM_005921.1	367	Caa/aa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177693	56177693	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	84	487	0	ENST00000399503.3:c.2667del	p.Asn891ThrfsTer18	p.N891Tfs*18	ENST00000399503	NM_005921.1	889	gTt/gt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134977857	134977857	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	89	518	0	ENST00000398015.3:c.2850C>A	p.Asp950Glu	p.D950E	ENST00000398015	NM_004441.4	950	gaC/gaA																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0023714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	1228	715	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845621	72845621	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	212	576	0	ENST00000268489.5:c.3719T>C	p.Val1240Ala	p.V1240A	ENST00000268489	NM_006885.3	1240	gTg/gCg																																																																															
ALK	238	MSKCC	GRCh37	2	29917723	29917723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	249	655	0	ENST00000389048.3:c.945G>A	p.Met315Ile	p.M315I	ENST00000389048	NM_004304.4	315	atG/atA																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101909998	101909999	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAAA			P-0023714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	89	385	0	ENST00000374994.4:c.1321_1322insAAAA	p.Met441LysfsTer8	p.M441Kfs*8	ENST00000374994	NM_004612.2	440	gaa/gAAAAaa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577329	64577330	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	249	662	0	ENST00000337652.1:c.252dup	p.Ile85TyrfsTer32	p.I85Yfs*32	ENST00000337652	NM_130803.2	84	-/T																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136370	2136372	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0023717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	235	742	0	ENST00000219476.3:c.4842_4844del	p.Ile1614del	p.I1614del	ENST00000219476	NM_000548.3	1613	gaCATc/gac																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288261	33288261	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	256	608	0	ENST00000374542.5:c.1147C>T	p.Gln383Ter	p.Q383*	ENST00000374542	NM_001141970.1	383	Caa/Taa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184083	56184084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	58	313	0	ENST00000399503.3:c.4289dup	p.Cys1430TrpfsTer2	p.C1430Wfs*2	ENST00000399503	NM_005921.1	1430	tgt/tGgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	131	300	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435578	18435578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	67	178	0	ENST00000266497.5:c.563C>T	p.Pro188Leu	p.P188L	ENST00000266497		188	cCg/cTg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281837	39281837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	52	342	0	ENST00000402219.2:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000402219	NM_005633.3	213	cGa/cAa																																																																															
FH	2271	MSKCC	GRCh37	1	241667359	241667359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	126	256	0	ENST00000366560.3:c.1091G>A	p.Gly364Glu	p.G364E	ENST00000366560	NM_000143.3	364	gGa/gAa																																																																															
ATM	472	MSKCC	GRCh37	11	108202678	108202679	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0023780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	74	212	0	ENST00000278616.4:c.7705_7706del	p.Asp2569Ter	p.D2569*	ENST00000278616	NM_000051.3	2568	AGa/a																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40384142	40384142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113461014		P-0023780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	98	286	0	ENST00000293328.3:c.4G>A	p.Ala2Thr	p.A2T	ENST00000293328	NM_012448.3	2	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0023874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	24	431	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42003150	42003150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	28	437	0	ENST00000219905.7:c.2687G>A	p.Arg896Gln	p.R896Q	ENST00000219905	NM_001164273.1	896	cGa/cAa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467509	66467509	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	14	222	0	ENST00000273854.3:c.760C>T	p.Gln254Ter	p.Q254*	ENST00000273854	NM_004439.5	254	Caa/Taa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16202753	16202753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	18	342	0	ENST00000375759.3:c.461G>A	p.Arg154Gln	p.R154Q	ENST00000375759	NM_015001.2	154	cGg/cAg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210432	2210432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	146	391	0	ENST00000398665.3:c.1039C>T	p.Arg347Cys	p.R347C	ENST00000398665	NM_032482.2	347	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs757274881		P-0023897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	217	560	0	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	238	550	0	ENST00000269305.4:c.814G>C	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ctg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242470	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC	rs397517096		P-0023902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	405	382	0	ENST00000275493.2:c.2239_2240delinsCC	p.Leu747Pro	p.L747P	ENST00000275493	NM_005228.3	747	TTa/CCa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021452	31021452	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	69	365	0	ENST00000375687.4:c.1451A>T	p.Glu484Val	p.E484V	ENST00000375687	NM_015338.5	484	gAg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	61	786	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0023965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	32	771	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492700	56492700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	38	703	0	ENST00000407977.2:c.239G>A	p.Gly80Glu	p.G80E	ENST00000407977		80	gGa/gAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575152	48575152	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	32	562	0	ENST00000342988.3:c.346C>A	p.Gln116Lys	p.Q116K	ENST00000342988	NM_005359.5	116	Cag/Aag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188404	32188404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	18	619	0	ENST00000375023.3:c.937G>A	p.Glu313Lys	p.E313K	ENST00000375023	NM_004557.3	313	Gaa/Aaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974711	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGGCAGCGC	TTGGGCAGCGC	-			P-0023965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	21	544	0	ENST00000304494.5:c.106_116del	p.Ala36ArgfsTer4	p.A36Rfs*4	ENST00000304494	NM_000077.4	36	GCGCTGCCCAAc/c																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627919	37627919	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	205	898	1	ENST00000447079.4:c.1834C>T	p.Gln612Ter	p.Q612*	ENST00000447079	NM_015083.1	612	Caa/Taa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061188	38061205	+	inframe_deletion	In_Frame_Del	DEL	CTTGAAGCGCTTCTGGCG	CTTGAAGCGCTTCTGGCG	-			P-0023988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	557	644	0	ENST00000250448.2:c.784_801del	p.Arg262_Lys267del	p.R262_K267del	ENST00000250448	NM_004496.3	262	CGCCAGAAGCGCTTCAAG/-																																																																															
CDK12	51755	MSKCC	GRCh37	17	37649101	37649101	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	136	709	0	ENST00000447079.4:c.2206G>C	p.Gly736Arg	p.G736R	ENST00000447079	NM_015083.1	736	Gga/Cga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0024045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	184	725	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0024045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	303	1132	3	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631979	90631979	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0024045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	238	631	0	ENST00000330062.3:c.374A>G	p.Glu125Gly	p.E125G	ENST00000330062	NM_002168.2	125	gAg/gGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	257	601	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0024113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	319	599	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	203	375	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	740	386	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012410	29012410	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	887	585	0	ENST00000282397.4:c.461T>G	p.Leu154Arg	p.L154R	ENST00000282397	NM_002019.4	154	cTc/cGc																																																																															
APC	324	MSKCC	GRCh37	5	112176030	112176030	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	166	363	0	ENST00000257430.4:c.4741delT	p.Ser1581LeufsTer69	p.S1581Lfs*69	ENST00000257430	NM_000038.5	1580	aTt/at																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120351	70120352	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	367	818	0	ENST00000245479.2:c.1354dupT	p.Tyr452LeufsTer126	p.Y452Lfs*126	ENST00000245479	NM_000346.3	451	-/T																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541582	187541582	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	185	427	0	ENST00000441802.2:c.6158T>C	p.Val2053Ala	p.V2053A	ENST00000441802	NM_005245.3	2053	gTg/gCg																																																																															
APC	324	MSKCC	GRCh37	5	112174600	112174600	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	194	449	1	ENST00000257430.4:c.3309G>T	p.Arg1103Ser	p.R1103S	ENST00000257430	NM_000038.5	1103	agG/agT																																																																															
MYCL1	4610	MSKCC	GRCh37	1	40367050	40367050	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	258	764	0	ENST00000397332.2:c.147C>G	p.Phe49Leu	p.F49L	ENST00000397332	NM_001033082.2	49	ttC/ttG																																																																															
RB1	5925	MSKCC	GRCh37	13	48934194	48934194	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	222	757	3	ENST00000267163.4:c.649C>T	p.Gln217Ter	p.Q217*	ENST00000267163	NM_000321.2	217	Cag/Tag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060904	38060904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	171	522	0	ENST00000250448.2:c.1085C>T	p.Ser362Phe	p.S362F	ENST00000250448	NM_004496.3	362	tCc/tTc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639984	3639984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	69	867	0	ENST00000294008.3:c.3655G>A	p.Glu1219Lys	p.E1219K	ENST00000294008	NM_032444.2	1219	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	301	965	0	ENST00000269305.4:c.451C>G	p.Pro151Ala	p.P151A	ENST00000269305	NM_001126112.2	151	Ccc/Gcc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016673	12016674	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	190	578	2	ENST00000353533.5:c.809_810insA	p.Met270IlefsTer4	p.M270Ifs*4	ENST00000353533	NM_003010.3	270	atg/atAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221626	36221626	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	313	872	0	ENST00000222270.7:c.5295G>A	p.Trp1765Ter	p.W1765*	ENST00000222270	NM_014727.1	1765	tgG/tgA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	413	700	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FYN	2534	MSKCC	GRCh37	6	111983034	111983034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	316	932	2	ENST00000368678.4:c.1513G>A	p.Glu505Lys	p.E505K	ENST00000368678		505	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	60	739	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0024133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	58	803	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78923245	78923245	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	51	717	0	ENST00000306801.3:c.3268G>A	p.Asp1090Asn	p.D1090N	ENST00000306801	NM_020761.2	1090	Gat/Aat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828372	72828372	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	66	633	0	ENST00000268489.5:c.8209G>T	p.Glu2737Ter	p.E2737*	ENST00000268489	NM_006885.3	2737	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578264	7578265	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0024214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	156	793	0	ENST00000269305.4:c.583_584dup	p.Arg196SerfsTer52	p.R196Sfs*52	ENST00000269305	NM_001126112.2	195	atc/atATc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0024230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	141	527	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	42	762	0	ENST00000263967.3:c.1634A>T	p.Glu545Val	p.E545V	ENST00000263967	NM_006218.2	545	gAg/gTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0024240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	75	848	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579379	7579397	+	frameshift_variant	Frame_Shift_Del	DEL	TAGGTTTTCTGGGAAGGGA	TAGGTTTTCTGGGAAGGGA	-			P-0024240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	55	1115	0	ENST00000269305.4:c.290_308del	p.Val97AlafsTer20	p.V97Afs*20	ENST00000269305	NM_001126112.2	97	gTCCCTTCCCAGAAAACCTAc/gc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	57	717	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0024244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	96	800	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15374266	15374266	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	40	554	0	ENST00000263377.2:c.1306G>C	p.Asp436His	p.D436H	ENST00000263377	NM_058243.2	436	Gac/Cac																																																																															
BRD4	23476	MSKCC	GRCh37	19	15374304	15374304	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	54	768	0	ENST00000263377.2:c.1268G>C	p.Arg423Pro	p.R423P	ENST00000263377	NM_058243.2	423	cGa/cCa																																																																															
BRD4	23476	MSKCC	GRCh37	19	15374317	15374317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	53	824	1	ENST00000263377.2:c.1255G>A	p.Gly419Ser	p.G419S	ENST00000263377	NM_058243.2	419	Ggt/Agt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15374332	15374332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	58	809	0	ENST00000263377.2:c.1240G>A	p.Asp414Asn	p.D414N	ENST00000263377	NM_058243.2	414	Gat/Aat																																																																															
BRD4	23476	MSKCC	GRCh37	19	15374353	15374353	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	50	750	0	ENST00000263377.2:c.1219C>G	p.Leu407Val	p.L407V	ENST00000263377	NM_058243.2	407	Ctg/Gtg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974795	21974795	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	11	194	0	ENST00000304494.5:c.32del	p.Pro11LeufsTer15	p.P11Lfs*15	ENST00000304494	NM_000077.4	11	cCt/ct																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44948998	44949002	+	frameshift_variant	Frame_Shift_Del	DEL	AATTT	AATTT	-			P-0024244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	27	251	0	ENST00000377967.4:c.3559_3563del	p.Asn1187ProfsTer10	p.N1187Pfs*10	ENST00000377967	NM_021140.2	1187	AATTTc/c																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	423	672	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0024260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	488	756	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0024260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	85	375	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105553	27105553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	140	613	2	ENST00000324856.7:c.5164C>T	p.Arg1722Ter	p.R1722*	ENST00000324856	NM_006015.4	1722	Cga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789621	3789621	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	210	607	0	ENST00000262367.5:c.4238A>G	p.His1413Arg	p.H1413R	ENST00000262367	NM_004380.2	1413	cAc/cGc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120132	70120133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0024260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	196	226	0	ENST00000245479.2:c.1137_1138dupGC	p.His380ArgfsTer4	p.H380Rfs*4	ENST00000245479	NM_000346.3	378	-/GC																																																																															
ATRX	546	MSKCC	GRCh37	X	76940077	76940077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	141	587	0	ENST00000373344.5:c.671C>T	p.Ala224Val	p.A224V	ENST00000373344	NM_000489.3	224	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	92	940	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0024267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	49	1195	1	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																															
TET1	80312	MSKCC	GRCh37	10	70426901	70426901	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	58	634	0	ENST00000373644.4:c.4561G>T	p.Val1521Leu	p.V1521L	ENST00000373644	NM_030625.2	1521	Gtg/Ttg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244278	5244279	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0024267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	54	1014	2	ENST00000357368.4:c.1203_1204delinsTT	p.Trp401_Val402delinsCysLeu	p.W401_V402delinsCL	ENST00000357368	NM_002850.3	401	tgGGtg/tgTTtg																																																																															
INSR	3643	MSKCC	GRCh37	19	7120714	7120714	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	58	1190	1	ENST00000302850.5:c.3576A>T	p.Lys1192Asn	p.K1192N	ENST00000302850	NM_000208.2	1192	aaA/aaT																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197198	26197198	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	41	752	0	ENST00000356476.2:c.281A>T	p.Gln94Leu	p.Q94L	ENST00000356476		94	cAg/cTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509581	106509581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	48	770	1	ENST00000359195.3:c.1575C>A	p.His525Gln	p.H525Q	ENST00000359195	NM_002649.2	525	caC/caA																																																																															
CDK12	51755	MSKCC	GRCh37	17	37646891	37646891	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	40	864	0	ENST00000447079.4:c.2015del	p.Pro672LeufsTer81	p.P672Lfs*81	ENST00000447079	NM_015083.1	671	ctC/ct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	413	797	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0024328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	118	460	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575203	48575203	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	178	419	0	ENST00000342988.3:c.397T>A	p.Tyr133Asn	p.Y133N	ENST00000342988	NM_005359.5	133	Tac/Aac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	74	334	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CBFB	865	MSKCC	GRCh37	16	67070527	67070543	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGATTTTTCTAAAAGGC	TGATTTTTCTAAAAGGC	-			P-0024364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	40	216	0	ENST00000412916.2:c.166-14_168del		p.X56_splice	ENST00000412916		56																																																																																
RTEL1	51750	MSKCC	GRCh37	20	62326168	62326168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	113	598	0	ENST00000508582.2:c.3256G>A	p.Ala1086Thr	p.A1086T	ENST00000508582		1086	Gcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928067	178928067	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	97	536	0	ENST00000263967.3:c.1345C>G	p.Pro449Ala	p.P449A	ENST00000263967	NM_006218.2	449	Cct/Gct																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873376	151873377	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	82	320	0	ENST00000262189.6:c.9161_9162insC	p.Leu3055SerfsTer32	p.L3055Sfs*32	ENST00000262189	NM_170606.2	3054	ctt/ctCt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0024397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	148	392	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106037	8106050	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGCGGGCTCTAT	CCTGCGGGCTCTAT	-			P-0024397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	141	373	0	ENST00000346208.3:c.858_871del	p.Cys287GlnfsTer11	p.C287Qfs*11	ENST00000346208		286	gCCTGCGGGCTCTAT/g																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119682	70119683	+	splice_acceptor_variant	Splice_Site	INS	-	-	G			P-0024397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	177	479	0	ENST00000245479.2:c.687dup		p.X229_splice	ENST00000245479	NM_000346.3	229																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40827919	40827919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	30	486	1	ENST00000373198.4:c.2509G>A	p.Glu837Lys	p.E837K	ENST00000373198	NM_133170.3	837	Gaa/Aaa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098414	47098414	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	78	430	0	ENST00000409792.3:c.6860C>G	p.Ser2287Cys	p.S2287C	ENST00000409792	NM_014159.6	2287	tCt/tGt																																																																															
RAD21	5885	MSKCC	GRCh37	8	117862958	117862958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	25	446	1	ENST00000297338.2:c.1519G>A	p.Glu507Lys	p.E507K	ENST00000297338	NM_006265.2	507	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	142	751	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920413	114920413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	277	497	1	ENST00000543371.1:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000543371	NM_001198531.1	452	Ggg/Agg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508082	106508082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	73	202	0	ENST00000359195.3:c.76C>T	p.Arg26Cys	p.R26C	ENST00000359195	NM_002649.2	26	Cgc/Tgc																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206648329	206648329	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55721947		P-0024445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	98	600	1	ENST00000367120.3:c.350G>A	p.Arg117His	p.R117H	ENST00000367120	NM_014002.3	117	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578383	7578383	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	258	529	0	ENST00000269305.4:c.547del	p.Ser183GlnfsTer64	p.S183Qfs*64	ENST00000269305	NM_001126112.2	183	Tca/ca																																																																															
CIC	23152	MSKCC	GRCh37	19	42793481	42793481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	279	651	3	ENST00000575354.2:c.1283G>A	p.Arg428His	p.R428H	ENST00000575354	NM_015125.3	428	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175208	112175208	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	111	243	0	ENST00000257430.4:c.3919del	p.Ile1307Ter	p.I1307*	ENST00000257430	NM_000038.5	1306	gAa/ga																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739012	145739012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	77	618	0	ENST00000428558.2:c.2143C>T	p.Arg715Trp	p.R715W	ENST00000428558	NM_004260.3	715	Cgg/Tgg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	27	668	2	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212208	5212208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148739536		P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	98	812	0	ENST00000357368.4:c.4823G>A	p.Arg1608Gln	p.R1608Q	ENST00000357368	NM_002850.3	1608	cGg/cAg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	47	655	2	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	46	450	2	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690817	89690819	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	18	526	0	ENST00000371953.3:c.226_228del	p.Tyr76del	p.Y76del	ENST00000371953	NM_000314.4	75	cATTat/cat																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827732	72827732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	39	645	2	ENST00000268489.5:c.8849G>A	p.Arg2950His	p.R2950H	ENST00000268489	NM_006885.3	2950	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	35	494	0	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt																																																																															
MYC	4609	MSKCC	GRCh37	8	128753187	128753187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	24	342	1	ENST00000377970.2:c.1348C>T	p.Arg450Trp	p.R450W	ENST00000377970	NM_002467.4	450	Cgg/Tgg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176054978	176054978	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	53	825	1	ENST00000367669.3:c.1075C>T	p.Arg359Ter	p.R359*	ENST00000367669	NM_022457.5	359	Cga/Tga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256321	16256321	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	34	737	0	ENST00000375759.3:c.3591del	p.Asp1198MetfsTer2	p.D1198Mfs*2	ENST00000375759	NM_015001.2	1196	Aaa/aa																																																																															
RAD51B	5890	MSKCC	GRCh37	14	68290283	68290283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	33	681	0	ENST00000487270.1:c.23G>A	p.Arg8Gln	p.R8Q	ENST00000487270	NM_133509.3	8	cGa/cAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	107	840	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228979	36228979	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	27	905	0	ENST00000222270.7:c.7759C>T	p.Arg2587Ter	p.R2587*	ENST00000222270	NM_014727.1	2587	Cga/Tga																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856595	111856595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	23	205	1	ENST00000341259.2:c.646C>T	p.Arg216Cys	p.R216C	ENST00000341259	NM_005475.2	216	Cgc/Tgc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654616	67654616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	51	720	0	ENST00000264010.4:c.1103G>A	p.Arg368His	p.R368H	ENST00000264010	NM_006565.3	368	cGt/cAt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16265331	16265331	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs889756630		P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	30	812	1	ENST00000375759.3:c.10823C>T	p.Ala3608Val	p.A3608V	ENST00000375759	NM_015001.2	3608	gCg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106025	27106025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	50	541	0	ENST00000324856.7:c.5636G>A	p.Arg1879Gln	p.R1879Q	ENST00000324856	NM_006015.4	1879	cGg/cAg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100591	8100591	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	43	752	0	ENST00000346208.3:c.568del	p.Leu190CysfsTer5	p.L190Cfs*5	ENST00000346208		189	Ccc/cc																																																																															
WT1	7490	MSKCC	GRCh37	11	32417801	32417801	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	20	502	1	ENST00000332351.3:c.1249+2T>A		p.X417_splice	ENST00000332351	NM_024426.4	417																																																																																
ETV6	2120	MSKCC	GRCh37	12	12022454	12022454	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753079378		P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	133	966	0	ENST00000396373.4:c.560C>T	p.Thr187Met	p.T187M	ENST00000396373	NM_001987.4	187	aCg/aTg																																																																															
POLE	5426	MSKCC	GRCh37	12	133218405	133218405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	94	946	6	ENST00000320574.5:c.5206G>A	p.Val1736Ile	p.V1736I	ENST00000320574	NM_006231.2	1736	Gtc/Atc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3634827	3634827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	64	946	2	ENST00000294008.3:c.4682C>T	p.Thr1561Met	p.T1561M	ENST00000294008	NM_032444.2	1561	aCg/aTg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78933944	78933944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	74	896	3	ENST00000306801.3:c.3544G>A	p.Val1182Met	p.V1182M	ENST00000306801	NM_020761.2	1182	Gtg/Atg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912867	50912867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	51	1006	0	ENST00000440232.2:c.2098G>A	p.Val700Ile	p.V700I	ENST00000440232	NM_002691.3	700	Gta/Ata																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427720	72427720	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	60	467	0	ENST00000477973.2:c.768T>G	p.Val257Gly	p.V257G	ENST00000477973	NM_012234.5	257	gTc/gGc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138417822	138417822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	28	659	1	ENST00000289153.2:c.1697G>A	p.Arg566Gln	p.R566Q	ENST00000289153	NM_006219.2	566	cGa/cAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879277	151879277	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	25	607	2	ENST00000262189.6:c.5668C>T	p.Arg1890Ter	p.R1890*	ENST00000262189	NM_170606.2	1890	Cga/Tga																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187222	38187222	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	59	1056	3	ENST00000317025.8:c.1255del	p.Thr419ProfsTer8	p.T419Pfs*8	ENST00000317025	NM_023034.1	419	Acc/cc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405602	139405602	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	46	922	0	ENST00000277541.6:c.2587+2T>C		p.X863_splice	ENST00000277541	NM_017617.3	863																																																																																
BCOR	54880	MSKCC	GRCh37	X	39922270	39922270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	28	243	0	ENST00000378444.4:c.3902C>T	p.Ala1301Val	p.A1301V	ENST00000378444	NM_001123385.1	1301	gCa/gTa																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228288	53228288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	21	408	0	ENST00000375401.3:c.2114G>A	p.Arg705His	p.R705H	ENST00000375401	NM_004187.3	705	cGc/cAc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437115	110437115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	83	103	0	ENST00000375856.3:c.1286G>T	p.Arg429Leu	p.R429L	ENST00000375856	NM_003749.2	429	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579716	7579716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	316	624	0	ENST00000269305.4:c.80delC	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	27	cCt/ct																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584754	48584754	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	142	536	0	ENST00000342988.3:c.833del	p.Pro278LeufsTer58	p.P278Lfs*58	ENST00000342988	NM_005359.5	278	Cct/ct																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0024516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	46	351	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32185819	32185819	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145916093		P-0024516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	314	692	0	ENST00000375023.3:c.1577C>T	p.Ala526Val	p.A526V	ENST00000375023	NM_004557.3	526	gCg/gTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0024516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	221	544	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412044	63412044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	148	777	0	ENST00000330258.3:c.1123C>T	p.Pro375Ser	p.P375S	ENST00000330258	NM_152424.3	375	Cca/Tca																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0024523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	18	656	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0024523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	147	553	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	37	542	1	ENST00000346208.3:c.1275dupA	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939260	71939260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	150	885	2	ENST00000298229.2:c.209G>A	p.Arg70His	p.R70H	ENST00000298229	NM_001567.3	70	cGc/cAc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780705	9780705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	106	724	0	ENST00000377346.4:c.1507G>A	p.Val503Ile	p.V503I	ENST00000377346	NM_005026.3	503	Gtc/Atc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061215	38061215	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	155	593	0	ENST00000250448.2:c.774C>G	p.Cys258Trp	p.C258W	ENST00000250448	NM_004496.3	258	tgC/tgG																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646192	23646192	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	27	470	0	ENST00000261584.4:c.1675C>T	p.Gln559Ter	p.Q559*	ENST00000261584	NM_024675.3	559	Caa/Taa																																																																															
GATA1	2623	MSKCC	GRCh37	X	48651591	48651591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	190	674	0	ENST00000376670.3:c.757C>T	p.Arg253Trp	p.R253W	ENST00000376670	NM_002049.3	253	Cgg/Tgg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509432	106509432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	48	647	0	ENST00000359195.3:c.1426C>T	p.Arg476Cys	p.R476C	ENST00000359195	NM_002649.2	476	Cgc/Tgc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18656338	18656338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	71	479	0	ENST00000266497.5:c.3017C>T	p.Ala1006Val	p.A1006V	ENST00000266497		1006	gCa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577023	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CCTCGC	CCTCGC	-			P-0024539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	271	739	0	ENST00000269305.4:c.915_919+1del		p.X305_splice	ENST00000269305	NM_001126112.2	305																																																																																
RAD51C	5889	MSKCC	GRCh37	17	56772345	56772345	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	98	524	0	ENST00000337432.4:c.199G>T	p.Glu67Ter	p.E67*	ENST00000337432	NM_058216.2	67	Gaa/Taa																																																																															
AGO2	27161	MSKCC	GRCh37	8	141551409	141551409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	52	629	3	ENST00000220592.5:c.1888C>T	p.Arg630Cys	p.R630C	ENST00000220592	NM_012154.3	630	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0024566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	164	1007	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	44	1020	2	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112170683	112170683	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	112	803	0	ENST00000257430.4:c.1779G>A	p.Trp593Ter	p.W593*	ENST00000257430	NM_000038.5	593	tgG/tgA																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716227	243716227	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	72	867	0	ENST00000263826.5:c.967T>C	p.Tyr323His	p.Y323H	ENST00000263826	NM_005465.4	323	Tat/Cat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25368412	25368412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	34	782	0	ENST00000256078.4:c.533C>T	p.Pro178Leu	p.P178L	ENST00000256078	NM_033360.2	178	cCt/cTt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2100465	2100465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	102	876	0	ENST00000219476.3:c.203C>T	p.Ala68Val	p.A68V	ENST00000219476	NM_000548.3	68	gCa/gTa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134960137	134960137	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0024566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	56	897	0	ENST00000398015.3:c.2494G>T	p.Asp832Tyr	p.D832Y	ENST00000398015	NM_004441.4	832	Gat/Tat																																																																															
AR	367	MSKCC	GRCh37	X	66863204	66863204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	175	458	0	ENST00000374690.3:c.1723C>T	p.Leu575Phe	p.L575F	ENST00000374690	NM_000044.3	575	Ctc/Ttc																																																																															
BTK	695	MSKCC	GRCh37	X	100630193	100630193	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	210	473	0	ENST00000308731.7:c.80A>T	p.Lys27Met	p.K27M	ENST00000308731	NM_000061.2	27	aAg/aTg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205062	38205062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	442	809	0	ENST00000317025.8:c.628G>A	p.Glu210Lys	p.E210K	ENST00000317025	NM_023034.1	210	Gag/Aag																																																																															
CD276	80381	MSKCC	GRCh37	15	73992051	73992051	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	149	827	0	ENST00000318443.5:c.71G>T	p.Cys24Phe	p.C24F	ENST00000318443	NM_001024736.1	24	tGc/tTc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24145567	24145567	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	267	668	1	ENST00000263121.7:c.586G>T	p.Asp196Tyr	p.D196Y	ENST00000263121	NM_003073.3	196	Gat/Tat																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005263	150005263	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	167	444	0	ENST00000253339.5:c.962G>T	p.Ser321Ile	p.S321I	ENST00000253339		321	aGt/aTt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526735	106526735	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0024599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	136	382	0	ENST00000359195.3:c.3028C>T	p.Gln1010Ter	p.Q1010*	ENST00000359195	NM_002649.2	1010	Cag/Tag																																																																															
JUN	3725	MSKCC	GRCh37	1	59248067	59248067	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	31	259	0	ENST00000371222.2:c.676A>T	p.Lys226Ter	p.K226*	ENST00000371222	NM_002228.3	226	Aag/Tag																																																																															
RET	5979	MSKCC	GRCh37	10	43607597	43607597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	148	641	0	ENST00000355710.3:c.1573C>T	p.Arg525Trp	p.R525W	ENST00000355710	NM_020975.4	525	Cgg/Tgg																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741684	17741684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	120	401	1	ENST00000250003.3:c.355C>T	p.Arg119Trp	p.R119W	ENST00000250003	NM_002478.4	119	Cgg/Tgg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118362615	118362615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	44	313	0	ENST00000534358.1:c.4976C>T	p.Thr1659Ile	p.T1659I	ENST00000534358	NM_005933.3	1659	aCt/aTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	147	469	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457294	67457294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	139	517	0	ENST00000327367.4:c.268C>T	p.Arg90Cys	p.R90C	ENST00000327367	NM_005902.3	90	Cgc/Tgc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530154	212530154	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	22	362	0	ENST00000342788.4:c.1765T>G	p.Cys589Gly	p.C589G	ENST00000342788	NM_005235.2	589	Tgt/Ggt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143045845	143045845	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	46	369	1	ENST00000262992.4:c.1789C>T	p.Arg597Ter	p.R597*	ENST00000262992	NM_001101669.1	597	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0024604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	83	219	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965569	93965569	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	38	361	0	ENST00000369303.4:c.2359C>G	p.Pro787Ala	p.P787A	ENST00000369303	NM_004440.3	787	Cca/Gca																																																																															
ROS1	6098	MSKCC	GRCh37	6	117724358	117724358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	146	467	2	ENST00000368508.3:c.521C>T	p.Ala174Val	p.A174V	ENST00000368508	NM_002944.2	174	gCg/gTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412647	63412648	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	103	476	0	ENST00000330258.3:c.519dupT	p.Ser174Ter	p.S174*	ENST00000330258	NM_152424.3	173	-/T																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	156	478	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0024647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	31	948	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115710	8115711	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	94	445	0	ENST00000346208.3:c.1060dupC	p.Leu354ProfsTer17	p.L354Pfs*17	ENST00000346208		352	-/C																																																																															
CBFB	865	MSKCC	GRCh37	16	67070605	67070605	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	83	390	0	ENST00000412916.2:c.229C>T	p.Gln77Ter	p.Q77*	ENST00000412916		77	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	336	904	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	134	338	1	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	539	818	9	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	299	909	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	212	584	0	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100324	8100324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	181	955	0	ENST00000346208.3:c.298G>A	p.Gly100Ser	p.G100S	ENST00000346208		100	Ggc/Agc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	242	834	18	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	270	809	0	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721436	176721436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	297	675	1	ENST00000439151.2:c.7067C>T	p.Thr2356Met	p.T2356M	ENST00000439151	NM_022455.4	2356	aCg/aTg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78796926	78796926	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	278	683	0	ENST00000306801.3:c.1039T>C	p.Phe347Leu	p.F347L	ENST00000306801	NM_020761.2	347	Ttt/Ctt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25976476	25976476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	262	732	0	ENST00000435504.4:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000435504		357	Cga/Tga																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	94	407	3	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162394349	162394349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	203	548	0	ENST00000366898.1:c.719C>T	p.Thr240Met	p.T240M	ENST00000366898	NM_004562.2	240	aCg/aTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	139	400	7	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803183	1803183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	373	1003	1	ENST00000260795.2:c.535G>A	p.Ala179Thr	p.A179T	ENST00000260795		179	Gct/Act																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	134	424	0	ENST00000307078.5:c.1214_1215delAG	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057937	27057937	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	300	942	0	ENST00000324856.7:c.1650delC	p.Tyr551ThrfsTer68	p.Y551Tfs*68	ENST00000324856	NM_006015.4	549	Ccc/cc																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428299	33428299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	262	732	3	ENST00000335858.7:c.488G>A	p.Arg163Gln	p.R163Q	ENST00000335858	NM_133629.2	163	cGg/cAg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976706	2976706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	281	813	1	ENST00000396946.4:c.1306C>T	p.Arg436Trp	p.R436W	ENST00000396946	NM_032415.4	436	Cgg/Tgg																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257366	19257366	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	280	917	4	ENST00000162023.5:c.767delC	p.Pro256GlnfsTer?	p.P256Qfs*?	ENST00000162023		256	cCa/ca																																																																															
CD274	29126	MSKCC	GRCh37	9	5465595	5465595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148141792		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	134	405	2	ENST00000381577.3:c.779G>A	p.Arg260His	p.R260H	ENST00000381577	NM_014143.3	260	cGt/cAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390736	139390736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	339	1118	4	ENST00000277541.6:c.7455del	p.Ser2486ArgfsTer103	p.S2486Rfs*103	ENST00000277541	NM_017617.3	2485	ccC/cc																																																																															
POLE	5426	MSKCC	GRCh37	12	133209298	133209298	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	85	907	1	ENST00000320574.5:c.6088delG	p.Ala2030ProfsTer18	p.A2030Pfs*18	ENST00000320574	NM_006231.2	2030	Gcc/cc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497358	149497358	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35731372		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	289	747	0	ENST00000261799.4:c.2960G>A	p.Arg987Gln	p.R987Q	ENST00000261799	NM_002609.3	987	cGg/cAg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615698	1615698	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	424	1119	2	ENST00000344749.5:c.1573delC	p.Arg525GlyfsTer18	p.R525Gfs*18	ENST00000344749	NM_001136139.2	525	Cgg/gg																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111907653	111907653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	208	451	1	ENST00000393256.3:c.427C>T	p.Arg143Cys	p.R143C	ENST00000393256	NM_006538.4	143	Cgc/Tgc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513268	44513268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	311	787	1	ENST00000291552.4:c.667G>A	p.Gly223Arg	p.G223R	ENST00000291552	NM_006758.2	223	Gga/Aga																																																																															
NSD1	64324	MSKCC	GRCh37	5	176722149	176722149	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146010779		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	35	661	1	ENST00000439151.2:c.7780G>A	p.Ala2594Thr	p.A2594T	ENST00000439151	NM_022455.4	2594	Gcc/Acc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245501	153245501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1024060344		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	218	623	0	ENST00000281708.4:c.1690C>T	p.Arg564Cys	p.R564C	ENST00000281708	NM_033632.3	564	Cgt/Tgt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025857	48025857	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1472949451		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	145	407	1	ENST00000234420.5:c.741del	p.Lys247AsnfsTer32	p.K247Nfs*32	ENST00000234420	NM_000179.2	245	atA/at																																																																															
INSR	3643	MSKCC	GRCh37	19	7132271	7132271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	56	716	1	ENST00000302850.5:c.2740C>T	p.Arg914Cys	p.R914C	ENST00000302850	NM_000208.2	914	Cgt/Tgt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210417	2210417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	263	789	0	ENST00000398665.3:c.1024C>T	p.Arg342Trp	p.R342W	ENST00000398665	NM_032482.2	342	Cgg/Tgg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589576	67589576	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1289537429		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	104	402	0	ENST00000274335.5:c.1344del	p.Lys448AsnfsTer32	p.K448Nfs*32	ENST00000274335		447	Aaa/aa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	718	1111	2	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445500	49445500	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	131	980	1	ENST00000301067.7:c.1966delC	p.Leu656CysfsTer274	p.L656Cfs*274	ENST00000301067	NM_003482.3	656	Ctg/tg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368253	45368253	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	443	668	0	ENST00000262160.6:c.1349A>G	p.Asp450Gly	p.D450G	ENST00000262160	NM_005901.5	450	gAc/gGc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948208	71948209	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	314	1128	2	ENST00000298229.2:c.2927dupC	p.Pro977ThrfsTer7	p.P977Tfs*7	ENST00000298229	NM_001567.3	974	gcc/gCcc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953258	81953258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	79	360	1	ENST00000359376.3:c.2224C>T	p.Arg742Cys	p.R742C	ENST00000359376	NM_002661.3	742	Cgc/Tgc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134873105	134873105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	228	698	0	ENST00000398015.3:c.1409G>A	p.Arg470Gln	p.R470Q	ENST00000398015	NM_004441.4	470	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444377	49444377	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	280	724	1	ENST00000301067.7:c.2994delT	p.Met999Ter	p.M999*	ENST00000301067	NM_003482.3	998	ccT/cc																																																																															
RET	5979	MSKCC	GRCh37	10	43619163	43619163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	252	755	1	ENST00000355710.3:c.2846G>A	p.Gly949Glu	p.G949E	ENST00000355710	NM_020975.4	949	gGa/gAa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778282	3778282	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	276	815	2	ENST00000262367.5:c.6766del	p.Leu2256SerfsTer46	p.L2256Sfs*46	ENST00000262367	NM_004380.2	2256	Ctc/tc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210893	36210893	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	319	908	2	ENST00000222270.7:c.649del	p.Arg217GlyfsTer22	p.R217Gfs*22	ENST00000222270	NM_014727.1	215	aCc/ac																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274710	123274710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	253	753	1	ENST00000358487.5:c.1208C>T	p.Thr403Met	p.T403M	ENST00000358487	NM_000141.4	403	aCg/aTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65307173	65307173	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs181919006		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	214	646	0	ENST00000342505.4:c.2515C>T	p.Arg839Ter	p.R839*	ENST00000342505	NM_002227.2	839	Cga/Tga																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041668	14041668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	228	562	1	ENST00000311895.7:c.2215G>A	p.Gly739Ser	p.G739S	ENST00000311895	NM_005236.2	739	Ggc/Agc																																																																															
CBL	867	MSKCC	GRCh37	11	119167717	119167717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	272	709	1	ENST00000264033.4:c.2126G>A	p.Arg709Gln	p.R709Q	ENST00000264033	NM_005188.3	709	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023034	27023034	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	28	129	0	ENST00000324856.7:c.140G>C	p.Arg47Pro	p.R47P	ENST00000324856	NM_006015.4	47	cGc/cCc																																																																															
MPL	4352	MSKCC	GRCh37	1	43805098	43805098	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137952228		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	288	823	2	ENST00000372470.3:c.548C>T	p.Thr183Met	p.T183M	ENST00000372470	NM_005373.2	183	aCg/aTg																																																																															
RET	5979	MSKCC	GRCh37	10	43619190	43619190	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	244	731	0	ENST00000355710.3:c.2873A>C	p.Glu958Ala	p.E958A	ENST00000355710	NM_020975.4	958	gAg/gCg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94197341	94197341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	302	804	0	ENST00000323929.3:c.1163G>A	p.Arg388Gln	p.R388Q	ENST00000323929	NM_005591.3	388	cGg/cAg																																																																															
ATM	472	MSKCC	GRCh37	11	108172463	108172463	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	191	592	0	ENST00000278616.4:c.5266A>G	p.Thr1756Ala	p.T1756A	ENST00000278616	NM_000051.3	1756	Aca/Gca																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118362638	118362638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	202	488	0	ENST00000534358.1:c.4999C>T	p.Arg1667Trp	p.R1667W	ENST00000534358	NM_005933.3	1667	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424138	49424138	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200638996		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	394	912	2	ENST00000301067.7:c.13924G>A	p.Val4642Ile	p.V4642I	ENST00000301067	NM_003482.3	4642	Gtc/Atc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433394	49433394	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	53	957	0	ENST00000301067.7:c.8053C>T	p.Arg2685Ter	p.R2685*	ENST00000301067	NM_003482.3	2685	Cga/Tga																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30103628	30103628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	265	713	0	ENST00000331968.5:c.1310C>T	p.Thr437Met	p.T437M	ENST00000331968	NM_002742.2	437	aCg/aTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031880	10031880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	280	844	1	ENST00000330684.3:c.943G>A	p.Glu315Lys	p.E315K	ENST00000330684	NM_001134407.1	315	Gag/Aag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351703	89351703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	329	1017	2	ENST00000301030.4:c.1247C>T	p.Ala416Val	p.A416V	ENST00000301030	NM_001256183.1	416	gCg/gTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435956	56435956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	71	512	0	ENST00000407977.2:c.1181C>T	p.Ala394Val	p.A394V	ENST00000407977		394	gCa/gTa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11107209	11107209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	148	752	0	ENST00000344626.4:c.1801C>T	p.Pro601Ser	p.P601S	ENST00000344626	NM_003072.3	601	Ccg/Tcg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379649	17379651	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	147	504	6	ENST00000359435.4:c.45_47del	p.Glu18del	p.E18del	ENST00000359435	NM_001033549.1	12	GAG/-																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260206	19260206	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	381	972	1	ENST00000162023.5:c.87G>T	p.Met29Ile	p.M29I	ENST00000162023		29	atG/atT																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52724289	52724289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	272	653	0	ENST00000322088.6:c.1421G>A	p.Gly474Glu	p.G474E	ENST00000322088	NM_014225.5	474	gGg/gAg																																																																															
ALK	238	MSKCC	GRCh37	2	29432680	29432680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	40	750	1	ENST00000389048.3:c.3808G>A	p.Asp1270Asn	p.D1270N	ENST00000389048	NM_004304.4	1270	Gac/Aac																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561222	9561222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	45	634	0	ENST00000353224.5:c.560C>T	p.Pro187Leu	p.P187L	ENST00000353224	NM_177990.2	187	cCt/cTt																																																																															
SRC	6714	MSKCC	GRCh37	20	36031742	36031742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	348	840	0	ENST00000358208.4:c.1571C>T	p.Thr524Met	p.T524M	ENST00000358208		524	aCg/aTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41546129	41546129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	181	509	1	ENST00000263253.7:c.2744G>A	p.Arg915His	p.R915H	ENST00000263253	NM_001429.3	915	cGc/cAc																																																																															
EP300	2033	MSKCC	GRCh37	22	41558730	41558733	+	frameshift_variant	Frame_Shift_Del	DEL	AATA	AATA	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	208	603	1	ENST00000263253.7:c.3681_3684del	p.Asn1227LysfsTer49	p.N1227Kfs*49	ENST00000263253	NM_001429.3	1225	acAATA/ac																																																																															
EP300	2033	MSKCC	GRCh37	22	41574029	41574029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	226	625	0	ENST00000263253.7:c.6314G>A	p.Gly2105Asp	p.G2105D	ENST00000263253	NM_001429.3	2105	gGc/gAc																																																																															
VHL	7428	MSKCC	GRCh37	3	10188239	10188239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	305	874	1	ENST00000256474.2:c.382C>T	p.Leu128Phe	p.L128F	ENST00000256474	NM_000551.3	128	Ctt/Ttt																																																																															
TET2	54790	MSKCC	GRCh37	4	106180849	106180849	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	167	477	0	ENST00000380013.4:c.3877A>C	p.Met1293Leu	p.M1293L	ENST00000380013	NM_001127208.2	1293	Atg/Ctg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111581	56111581	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	120	215	1	ENST00000399503.3:c.181C>T	p.Gln61Ter	p.Q61*	ENST00000399503	NM_005921.1	61	Cag/Tag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178071	56178071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	161	465	0	ENST00000399503.3:c.3044C>A	p.Pro1015His	p.P1015H	ENST00000399503	NM_005921.1	1015	cCt/cAt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288600	33288600	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	188	489	0	ENST00000374542.5:c.952C>G	p.Arg318Gly	p.R318G	ENST00000374542	NM_001141970.1	318	Cga/Gga																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249387	110249387	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	379	1163	0	ENST00000374672.4:c.1186del	p.His396ThrfsTer48	p.H396Tfs*48	ENST00000374672	NM_004235.4	396	Cac/ac																																																																															
BRAF	673	MSKCC	GRCh37	7	140453132	140453132	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	26	426	0	ENST00000288602.6:c.1803A>T	p.Lys601Asn	p.K601N	ENST00000288602	NM_004333.4	601	aaA/aaT																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098799	178098799	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	89	593	0	ENST00000397062.3:c.246A>C	p.Glu82Asp	p.E82D	ENST00000397062	NM_006164.4	82	gaA/gaC																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125503187	125503187	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	36	334	0	ENST00000428830.2:c.554A>T	p.His185Leu	p.H185L	ENST00000428830	NM_001114121.2	185	cAt/cTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29562721	29562721	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	51	477	0	ENST00000358273.4:c.3802del	p.Ala1268GlnfsTer17	p.A1268Qfs*17	ENST00000358273	NM_001042492.2	1267	ttG/tt																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18277037	18277037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	76	760	0	ENST00000222254.8:c.1484G>A	p.Gly495Asp	p.G495D	ENST00000222254	NM_005027.3	495	gGc/gAc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435104	56435104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	79	634	1	ENST00000407977.2:c.2033G>A	p.Cys678Tyr	p.C678Y	ENST00000407977		678	tGc/tAc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821324	32821324	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	82	736	0	ENST00000354258.4:c.270del	p.Ala91ProfsTer32	p.A91Pfs*32	ENST00000354258	NM_000593.5	90	ctC/ct																																																																															
PMS2	5395	MSKCC	GRCh37	7	6027051	6027051	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	87	682	1	ENST00000265849.7:c.1345C>T	p.Gln449Ter	p.Q449*	ENST00000265849	NM_000535.5	449	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	104	548	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	257	605	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47656969	47656969	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	73	409	1	ENST00000233146.2:c.1165C>T	p.Arg389Ter	p.R389*	ENST00000233146	NM_000251.2	389	Cga/Tga																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78425869	78425869	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	38	374	0	ENST00000370768.2:c.1576G>A	p.Ala526Thr	p.A526T	ENST00000370768	NM_003902.3	526	Gct/Act																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103528119	103528119	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55798001		P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	33	361	0	ENST00000355739.4:c.3427G>A	p.Ala1143Thr	p.A1143T	ENST00000355739	NM_000123.3	1143	Gcg/Acg																																																																															
MGA	23269	MSKCC	GRCh37	15	41962101	41962101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	101	416	0	ENST00000219905.7:c.1009G>A	p.Asp337Asn	p.D337N	ENST00000219905	NM_001164273.1	337	Gat/Aat																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212170	5212170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	114	623	0	ENST00000357368.4:c.4861G>T	p.Val1621Leu	p.V1621L	ENST00000357368	NM_002850.3	1621	Gtg/Ttg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299124	15299124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	155	563	0	ENST00000263388.2:c.1414G>C	p.Glu472Gln	p.E472Q	ENST00000263388	NM_000435.2	472	Gag/Cag																																																																															
UPF1	5976	MSKCC	GRCh37	19	18971733	18971733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	102	529	1	ENST00000262803.5:c.2399G>T	p.Arg800Leu	p.R800L	ENST00000262803	NM_002911.3	800	cGc/cTc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391150	89391150	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	91	455	1	ENST00000336596.2:c.1216A>T	p.Thr406Ser	p.T406S	ENST00000336596	NM_005233.5	406	Acc/Tcc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270140	66270140	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	162	415	0	ENST00000273854.3:c.1742T>C	p.Val581Ala	p.V581A	ENST00000273854	NM_004439.5	581	gTg/gCg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553742	106553742	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	52	442	1	ENST00000369096.4:c.1707G>T	p.Gln569His	p.Q569H	ENST00000369096	NM_001198.3	569	caG/caT																																																																															
HGF	3082	MSKCC	GRCh37	7	81372722	81372722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	73	419	0	ENST00000222390.5:c.812G>A	p.Cys271Tyr	p.C271Y	ENST00000222390	NM_000601.4	271	tGc/tAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396497	139396497	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	86	608	0	ENST00000277541.6:c.5428C>T	p.Gln1810Ter	p.Q1810*	ENST00000277541	NM_017617.3	1810	Cag/Tag																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625164	69625164	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115452181		P-0024829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	97	330	0	ENST00000334134.2:c.629G>A	p.Arg210Gln	p.R210Q	ENST00000334134	NM_005247.2	210	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0024829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	177	477	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	253	349	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11168978	11168978	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	128	388	0	ENST00000344626.4:c.4472G>T	p.Arg1491Leu	p.R1491L	ENST00000344626	NM_003072.3	1491	cGa/cTa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15284906	15284906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	346	439	0	ENST00000263388.2:c.4709G>A	p.Arg1570His	p.R1570H	ENST00000263388	NM_000435.2	1570	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112174787	112174788	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0024829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	156	222	0	ENST00000257430.4:c.3497dup	p.Tyr1166Ter	p.Y1166*	ENST00000257430	NM_000038.5	1166	tat/tAat																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133322	38133322	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0024829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	1095	356	0	ENST00000317025.8:c.4151C>G	p.Ser1384Ter	p.S1384*	ENST00000317025	NM_023034.1	1384	tCa/tGa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133950	38133950	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	2825	558	0	ENST00000317025.8:c.3936C>G	p.Ile1312Met	p.I1312M	ENST00000317025	NM_023034.1	1312	atC/atG																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70970924	70970924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	392	451	0	ENST00000276594.2:c.1337G>A	p.Arg446Gln	p.R446Q	ENST00000276594	NM_024504.3	446	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	57	656	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31374389	31374389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	94	569	0	ENST00000328111.2:c.388C>T	p.Arg130Cys	p.R130C	ENST00000328111	NM_006892.3	130	Cgc/Tgc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936201	71936201	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	85	373	0	ENST00000298229.2:c.173T>C	p.Leu58Pro	p.L58P	ENST00000298229	NM_001567.3	58	cTc/cCc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965421	25965421	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	85	689	0	ENST00000435504.4:c.3785C>G	p.Ala1262Gly	p.A1262G	ENST00000435504		1262	gCc/gGc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248725	212248725	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	51	345	0	ENST00000342788.4:c.3542A>G	p.Gln1181Arg	p.Q1181R	ENST00000342788	NM_005235.2	1181	cAa/cGa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	26	323	0	ENST00000281708.4:c.1634A>T	p.Tyr545Phe	p.Y545F	ENST00000281708	NM_033632.3	545	tAt/tTt																																																																															
APC	324	MSKCC	GRCh37	5	112174252	112174252	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	46	409	0	ENST00000257430.4:c.2961del	p.Glu988LysfsTer17	p.E988Kfs*17	ENST00000257430	NM_000038.5	987	tcT/tc																																																																															
APC	324	MSKCC	GRCh37	5	112175087	112175087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	36	279	0	ENST00000257430.4:c.3796G>A	p.Asp1266Asn	p.D1266N	ENST00000257430	NM_000038.5	1266	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112175540	112175541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0024832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	21	280	0	ENST00000257430.4:c.4250_4251dup	p.Ile1418LeufsTer2	p.I1418Lfs*2	ENST00000257430	NM_000038.5	1417	att/aTTtt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372264	55372264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	81	552	0	ENST00000297316.4:c.954G>T	p.Gln318His	p.Q318H	ENST00000297316	NM_022454.3	318	caG/caT																																																																															
PAX5	5079	MSKCC	GRCh37	9	37006485	37006485	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	35	372	0	ENST00000358127.4:c.460T>G	p.Ser154Ala	p.S154A	ENST00000358127	NM_001280556.1	154	Tcc/Gcc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	92	488	3				ENST00000310581	NM_198253.2																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0024855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	181	327	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0024855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	120	823	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0024855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	389	717	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188995	32188995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	151	733	2	ENST00000375023.3:c.559G>A	p.Glu187Lys	p.E187K	ENST00000375023	NM_004557.3	187	Gag/Aag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221729	36221729	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	145	795	0	ENST00000222270.7:c.5398G>T	p.Glu1800Ter	p.E1800*	ENST00000222270	NM_014727.1	1800	Gag/Tag																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430515	181430515	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	90	658	0	ENST00000325404.1:c.367G>C	p.Asp123His	p.D123H	ENST00000325404	NM_003106.3	123	Gat/Cat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183318	56183330	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGGGACAATTG	CTGGGGACAATTG	-			P-0024855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	187	459	0	ENST00000399503.3:c.4229_4241del	p.Leu1410HisfsTer8	p.L1410Hfs*8	ENST00000399503	NM_005921.1	1410	CTGGGGACAATTGca/ca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0024878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	115	377	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
MPL	4352	MSKCC	GRCh37	1	43814532	43814532	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	66	193	0	ENST00000372470.3:c.1330del	p.Ala444ProfsTer52	p.A444Pfs*52	ENST00000372470	NM_005373.2	443	Ggg/gg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28908183	28908183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	126	338	0	ENST00000282397.4:c.2572G>T	p.Val858Leu	p.V858L	ENST00000282397	NM_002019.4	858	Gtg/Ttg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29005287	29005287	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	110	324	0	ENST00000282397.4:c.974C>A	p.Ser325Ter	p.S325*	ENST00000282397	NM_002019.4	325	tCa/tAa																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502250	186502250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	65	181	1	ENST00000323963.5:c.59C>T	p.Pro20Leu	p.P20L	ENST00000323963		20	cCc/cTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0024932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	128	445	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0024932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	93	561	1	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145743003	145743003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	66	216	0	ENST00000428558.2:c.101C>T	p.Ala34Val	p.A34V	ENST00000428558	NM_004260.3	34	gCg/gTg																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271393	26271393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	52	499	0	ENST00000305910.3:c.220G>A	p.Glu74Lys	p.E74K	ENST00000305910	NM_003534.2	74	Gaa/Aaa																																																																															
AKT1	207	MSKCC	GRCh37	14	105258937	105258937	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0024932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	44	733	0	ENST00000349310.3:c.44G>C	p.Arg15Pro	p.R15P	ENST00000349310	NM_001014432.1	15	cGa/cCa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673761	30673761	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	85	395	0	ENST00000376406.3:c.3199C>G	p.Leu1067Val	p.L1067V	ENST00000376406	NM_014641.2	1067	Ctt/Gtt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	84	604	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
HGF	3082	MSKCC	GRCh37	7	81355283	81355283	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	49	381	0	ENST00000222390.5:c.1091G>T	p.Trp364Leu	p.W364L	ENST00000222390	NM_000601.4	364	tGg/tTg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274723	123274723	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	88	495	1	ENST00000358487.5:c.1195C>T	p.Arg399Ter	p.R399*	ENST00000358487	NM_000141.4	399	Cga/Tga																																																																															
ATM	472	MSKCC	GRCh37	11	108164163	108164164	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	86	370	0	ENST00000278616.4:c.4741dupA	p.Ile1581AsnfsTer5	p.I1581Nfs*5	ENST00000278616	NM_000051.3	1579	caa/cAaa																																																																															
GATA1	2623	MSKCC	GRCh37	X	48649605	48649605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	18	673	0	ENST00000376670.3:c.89C>T	p.Ser30Leu	p.S30L	ENST00000376670	NM_002049.3	30	tCa/tTa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156848936	156848936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	180	568	0	ENST00000524377.1:c.1828C>A	p.Leu610Met	p.L610M	ENST00000524377	NM_002529.3	610	Ctg/Atg																																																																															
TET1	80312	MSKCC	GRCh37	10	70432717	70432717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	95	616	1	ENST00000373644.4:c.4739C>T	p.Ser1580Leu	p.S1580L	ENST00000373644	NM_030625.2	1580	tCa/tTa																																																																															
YAP1	10413	MSKCC	GRCh37	11	102076762	102076764	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	21	557	0	ENST00000282441.5:c.943_945del	p.Lys315del	p.K315del	ENST00000282441	NM_001130145.2	314	gAGAag/gag																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30066811	30066811	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	51	495	0	ENST00000331968.5:c.2320T>C	p.Tyr774His	p.Y774H	ENST00000331968	NM_002742.2	774	Tat/Cat																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10260251	10260251	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	45	506	0	ENST00000340748.4:c.2416G>T	p.Gly806Trp	p.G806W	ENST00000340748		806	Ggg/Tgg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463289	25463289	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	63	441	1	ENST00000264709.3:c.2204A>T	p.Tyr735Phe	p.Y735F	ENST00000264709	NM_175629.2	735	tAc/tTc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164090	47164090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	79	381	0	ENST00000409792.3:c.2036C>T	p.Ala679Val	p.A679V	ENST00000409792	NM_014159.6	679	gCa/gTa																																																																															
NBN	4683	MSKCC	GRCh37	8	90995076	90995087	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGTTCTCCTGA	TGGTTCTCCTGA	ATTTAT			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	95	381	3	ENST00000265433.3:c.38-4_45delinsATAAAT		p.X13_splice	ENST00000265433	NM_002485.4	13																																																																																
MYC	4609	MSKCC	GRCh37	8	128752987	128752987	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	34	352	0	ENST00000377970.2:c.1148A>T	p.Asn383Ile	p.N383I	ENST00000377970	NM_002467.4	383	aAc/aTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47004897	47004897	+	intron_variant	Intron	SNP	G	G	T			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	55	412	0	ENST00000377604.3:c.-126+13G>T		p.*42*	ENST00000377604	NM_001204468.1																																																																																	
RBM10	8241	MSKCC	GRCh37	X	47040675	47040675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	62	634	0	ENST00000329236.7:c.1076A>G	p.Tyr359Cys	p.Y359C	ENST00000329236	NM_001204466.1	359	tAc/tGc																																																																															
AR	367	MSKCC	GRCh37	X	66931426	66931426	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	95	580	0	ENST00000374690.3:c.2068C>A	p.His690Asn	p.H690N	ENST00000374690	NM_000044.3	690	Cac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	83	679	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524486	44524486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	38	312	0	ENST00000291552.4:c.71T>C	p.Ile24Thr	p.I24T	ENST00000291552	NM_006758.2	24	aTt/aCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579336	7579337	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0024952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	75	624	0	ENST00000269305.4:c.350_351del	p.Gly117AspfsTer31	p.G117Dfs*31	ENST00000269305	NM_001126112.2	117	gGG/g																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0024992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	26	318	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	349	696	2	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																															
SMO	6608	MSKCC	GRCh37	7	128829040	128829042	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	13	98	0	ENST00000249373.3:c.67_69delCTG	p.Leu23del	p.L23del	ENST00000249373	NM_005631.4	16	ggGCTg/ggg																																																																															
CIC	23152	MSKCC	GRCh37	19	42799050	42799050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2070	458	794	1	ENST00000575354.2:c.4534C>T	p.Arg1512Cys	p.R1512C	ENST00000575354	NM_015125.3	1512	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	268	488	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
GLI1	2735	MSKCC	GRCh37	12	57860126	57860126	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1302	348	657	0	ENST00000228682.2:c.866T>G	p.Val289Gly	p.V289G	ENST00000228682	NM_005269.2	289	gTg/gGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47032554	47032554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	1012	327	2	ENST00000329236.7:c.229G>T	p.Val77Leu	p.V77L	ENST00000329236	NM_001204466.1	77	Gtg/Ttg																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154263	2154263	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1341	354	599	0	ENST00000434045.2:c.665C>G	p.Pro222Arg	p.P222R	ENST00000434045	NM_001127598.1	222	cCc/cGc																																																																															
WT1	7490	MSKCC	GRCh37	11	32438072	32438072	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	519	517	0	ENST00000332351.3:c.965G>T	p.Ser322Ile	p.S322I	ENST00000332351	NM_024426.4	322	aGc/aTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373754	118373754	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	189	461	0	ENST00000534358.1:c.7147G>T	p.Asp2383Tyr	p.D2383Y	ENST00000534358	NM_005933.3	2383	Gac/Tac																																																																															
RECQL	5965	MSKCC	GRCh37	12	21626516	21626516	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	1040	691	2	ENST00000421138.2:c.1416C>A	p.Asn472Lys	p.N472K	ENST00000421138		472	aaC/aaA																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864856	57864856	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	703	703	1	ENST00000228682.2:c.2333A>T	p.Glu778Val	p.E778V	ENST00000228682	NM_005269.2	778	gAa/gTa																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281477	49281477	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	286	650	0	ENST00000282018.3:c.524A>C	p.Asp175Ala	p.D175A	ENST00000282018	NM_020377.2	175	gAc/gCc																																																																															
MGA	23269	MSKCC	GRCh37	15	42034992	42034992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	697	614	0	ENST00000219905.7:c.4834G>T	p.Val1612Leu	p.V1612L	ENST00000219905	NM_001164273.1	1612	Gtg/Ttg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16052833	16052833	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	124	461	0	ENST00000268712.3:c.843-2A>G		p.X281_splice	ENST00000268712	NM_006311.3	281																																																																																
NF1	4763	MSKCC	GRCh37	17	29486081	29486081	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	403	624	2	ENST00000358273.4:c.258A>G	p.Ile86Met	p.I86M	ENST00000358273	NM_001042492.2	86	atA/atG																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40364198	40364198	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	421	880	1	ENST00000293328.3:c.1484del	p.Pro495HisfsTer19	p.P495Hfs*19	ENST00000293328	NM_012448.3	495	cCa/ca																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584501	48584501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	201	429	0	ENST00000342988.3:c.674C>T	p.Pro225Leu	p.P225L	ENST00000342988	NM_005359.5	225	cCt/cTt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212488736	212488736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	1029	602	0	ENST00000342788.4:c.2113C>T	p.Pro705Ser	p.P705S	ENST00000342788	NM_005235.2	705	Ccc/Tcc																																																																															
MYD88	4615	MSKCC	GRCh37	3	38180195	38180195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	939	429	0	ENST00000396334.3:c.43G>T	p.Ala15Ser	p.A15S	ENST00000396334	NM_002468.4	15	Gct/Tct																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391022	89391022	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	533	645	0	ENST00000336596.2:c.1088G>T	p.Cys363Phe	p.C363F	ENST00000336596	NM_005233.5	363	tGt/tTt																																																																															
KDR	3791	MSKCC	GRCh37	4	55968600	55968600	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	700	703	2	ENST00000263923.4:c.2063G>C	p.Cys688Ser	p.C688S	ENST00000263923	NM_002253.2	688	tGc/tCc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168671	56168671	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	451	500	0	ENST00000399503.3:c.1525G>C	p.Val509Leu	p.V509L	ENST00000399503	NM_005921.1	509	Gtg/Ctg																																																																															
IRF4	3662	MSKCC	GRCh37	6	407507	407507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	468	663	1	ENST00000380956.4:c.1265G>A	p.Gly422Glu	p.G422E	ENST00000380956	NM_001195286.1	422	gGa/gAa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509676	106509676	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	282	535	0	ENST00000359195.3:c.1670C>A	p.Ala557Glu	p.A557E	ENST00000359195	NM_002649.2	557	gCg/gAg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106524689	106524689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	373	447	0	ENST00000359195.3:c.2850C>A	p.Asp950Glu	p.D950E	ENST00000359195	NM_002649.2	950	gaC/gaA																																																																															
PREX2	80243	MSKCC	GRCh37	8	69143594	69143594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	210	459	0	ENST00000288368.4:c.4802C>T	p.Pro1601Leu	p.P1601L	ENST00000288368	NM_024870.2	1601	cCc/cTc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864889	117864889	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	457	643	1	ENST00000297338.2:c.1220G>T	p.Gly407Val	p.G407V	ENST00000297338	NM_006265.2	407	gGa/gTa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412371	63412371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	677	433	0	ENST00000330258.3:c.796G>T	p.Ala266Ser	p.A266S	ENST00000330258	NM_152424.3	266	Gcc/Tcc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65309805	65309805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	50	626	1	ENST00000342505.4:c.2345C>T	p.Thr782Met	p.T782M	ENST00000342505	NM_002227.2	782	aCg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426867	49426867	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	103	419	0	ENST00000301067.7:c.11621C>G	p.Ser3874Cys	p.S3874C	ENST00000301067	NM_003482.3	3874	tCc/tGc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863233	57863233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	141	480	0	ENST00000228682.2:c.1328G>T	p.Gly443Val	p.G443V	ENST00000228682	NM_005269.2	443	gGg/gTg																																																																															
RB1	5925	MSKCC	GRCh37	13	49039210	49039228	+	frameshift_variant	Frame_Shift_Del	DEL	GACTGAAAACAAATATTTT	GACTGAAAACAAATATTTT	-			P-0025066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	84	571	2	ENST00000267163.4:c.2289_2307del	p.Arg763SerfsTer41	p.R763Sfs*41	ENST00000267163	NM_000321.2	763	aGACTGAAAACAAATATTTTg/ag																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710644	117710644	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	207	350	0	ENST00000368508.3:c.1628G>C	p.Gly543Ala	p.G543A	ENST00000368508	NM_002944.2	543	gGt/gCt																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317553	1317553	+	downstream_gene_variant	3'Flank	SNP	G	G	T			P-0025066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	54	589	0				ENST00000381566																																																																																		
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	24	317	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	32	586	2	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	24	522	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	154	620	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	39	301	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	62	319	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
CDK8	1024	MSKCC	GRCh37	13	26911760	26911760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	53	488	0	ENST00000381527.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000381527	NM_001260.1	62	tCg/tTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10254637	10254637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	27	380	0	ENST00000340748.4:c.2873G>A	p.Arg958His	p.R958H	ENST00000340748		958	cGc/cAc																																																																															
HRAS	3265	MSKCC	GRCh37	11	533881	533881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs727503093		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	90	567	1	ENST00000311189.7:c.175G>A	p.Ala59Thr	p.A59T	ENST00000311189		59	Gcc/Acc																																																																															
ATM	472	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781894		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	57	455	3	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	22	430	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56852600	56852600	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	52	456	1	ENST00000308159.5:c.518del	p.Pro173LeufsTer25	p.P173Lfs*25	ENST00000308159	NM_014669.4	172	Ccc/cc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11319406	11319406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149221273		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	29	497	1	ENST00000361445.4:c.61G>A	p.Val21Ile	p.V21I	ENST00000361445	NM_004958.3	21	Gtc/Atc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962930	2962930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	31	709	2	ENST00000396946.4:c.1978C>T	p.Arg660Trp	p.R660W	ENST00000396946	NM_032415.4	660	Cgg/Tgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630605	187630605	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	44	616	0	ENST00000441802.2:c.377del	p.Asn126IlefsTer20	p.N126Ifs*20	ENST00000441802	NM_005245.3	126	aAt/at																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163554	32163554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	41	357	1	ENST00000375023.3:c.5672del	p.Gly1891AlafsTer13	p.G1891Afs*13	ENST00000375023	NM_004557.3	1891	gGc/gc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251725	212251725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144311212		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	30	344	0	ENST00000342788.4:c.3334C>T	p.Arg1112Cys	p.R1112C	ENST00000342788	NM_005235.2	1112	Cgc/Tgc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	36	604	1	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324892	31324892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs765875917		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	15	152	0	ENST00000412585.2:c.44del	p.Ala15GlyfsTer5	p.A15Gfs*5	ENST00000412585	NM_005514.6	15	gCg/gg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128420047	128420047	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	65	585	5	ENST00000265960.3:c.381del	p.Lys127AsnfsTer20	p.K127Nfs*20	ENST00000265960	NM_001006617.1	127	aaA/aa																																																																															
CIC	23152	MSKCC	GRCh37	19	42793430	42793430	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144065857		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	20	466	1	ENST00000575354.2:c.1232C>T	p.Ala411Val	p.A411V	ENST00000575354	NM_015125.3	411	gCg/gTg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47641560	47641560	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	T	rs193922376		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	27	134	0	ENST00000233146.2:c.942+3A>T		p.X314_splice	ENST00000233146	NM_000251.2	314																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5221060	5221060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140049694		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	21	422	3	ENST00000357368.4:c.3406G>A	p.Gly1136Ser	p.G1136S	ENST00000357368	NM_002850.3	1136	Ggc/Agc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434054	49434054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	32	444	0	ENST00000301067.7:c.7499C>T	p.Ala2500Val	p.A2500V	ENST00000301067	NM_003482.3	2500	gCg/gTg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201980402	201980402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	63	634	1	ENST00000359651.3:c.142del	p.Gln48ArgfsTer107	p.Q48Rfs*107	ENST00000359651		46	aaC/aa																																																																															
PARP1	142	MSKCC	GRCh37	1	226573320	226573320	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141200001		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	48	459	0	ENST00000366794.5:c.896C>T	p.Ser299Leu	p.S299L	ENST00000366794	NM_001618.3	299	tCg/tTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71940202	71940202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	57	562	0	ENST00000298229.2:c.587C>T	p.Ala196Val	p.A196V	ENST00000298229	NM_001567.3	196	gCt/gTt																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926866	112926866	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	72	680	0	ENST00000351677.2:c.1486A>T	p.Met496Leu	p.M496L	ENST00000351677	NM_002834.3	496	Atg/Ttg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3799644	3799644	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	42	587	0	ENST00000262367.5:c.3820A>G	p.Thr1274Ala	p.T1274A	ENST00000262367	NM_004380.2	1274	Acc/Gcc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883774	37883774	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	35	665	2	ENST00000269571.5:c.3391delC	p.Leu1131Ter	p.L1131*	ENST00000269571		1129	gCc/gc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78519468	78519468	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	46	441	0	ENST00000306801.3:c.43del	p.Glu15ArgfsTer17	p.E15Rfs*17	ENST00000306801	NM_020761.2	13	ctG/ct																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4094485	4094485	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	43	632	0	ENST00000262948.5:c.1058A>G	p.Asn353Ser	p.N353S	ENST00000262948	NM_030662.3	353	aAc/aGc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097014	11097014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	27	555	0	ENST00000344626.4:c.505C>A	p.Pro169Thr	p.P169T	ENST00000344626	NM_003072.3	169	Cca/Aca																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976139	18976139	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	38	597	0	ENST00000262803.5:c.2899G>T	p.Gly967Cys	p.G967C	ENST00000262803	NM_002911.3	967	Ggc/Tgc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19256742	19256742	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	63	414	0	ENST00000162023.5:c.971C>A	p.Ser324Tyr	p.S324Y	ENST00000162023		324	tCt/tAt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703507	47703507	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	71	418	0	ENST00000233146.2:c.2010del	p.Asn671IlefsTer14	p.N671Ifs*14	ENST00000233146	NM_000251.2	669	ggC/gg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128044543	128044543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	38	440	0	ENST00000285398.2:c.1078C>T	p.Arg360Cys	p.R360C	ENST00000285398	NM_000122.1	360	Cgc/Tgc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719073	190719073	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	41	300	0	ENST00000441310.2:c.1075G>T	p.Val359Phe	p.V359F	ENST00000441310	NM_000534.4	359	Gtt/Ttt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212252701	212252701	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	32	220	0	ENST00000342788.4:c.3152G>T	p.Ser1051Ile	p.S1051I	ENST00000342788	NM_005235.2	1051	aGc/aTc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866377	42866377	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	49	526	1	ENST00000398585.3:c.255del	p.Val86CysfsTer9	p.V86Cfs*9	ENST00000398585	NM_001135099.1	85	ccC/cc																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513265	44513265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	37	473	1	ENST00000291552.4:c.670C>T	p.Arg224Trp	p.R224W	ENST00000291552	NM_006758.2	224	Cgg/Tgg																																																																															
EP300	2033	MSKCC	GRCh37	22	41553224	41553224	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	65	570	0	ENST00000263253.7:c.3313A>G	p.Lys1105Glu	p.K1105E	ENST00000263253	NM_001429.3	1105	Aag/Gag																																																																															
MST1R	4486	MSKCC	GRCh37	3	49924823	49924823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	42	684	1	ENST00000296474.3:c.4120C>T	p.Arg1374Cys	p.R1374C	ENST00000296474	NM_002447.2	1374	Cgt/Tgt																																																																															
TP63	8626	MSKCC	GRCh37	3	189586505	189586505	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	23	313	0	ENST00000264731.3:c.1129C>T	p.Pro377Ser	p.P377S	ENST00000264731	NM_003722.4	377	Ccg/Tcg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38955721	38955721	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	37	372	0	ENST00000357387.3:c.2585A>G	p.Asn862Ser	p.N862S	ENST00000357387	NM_152756.3	862	aAc/aGc																																																																															
APC	324	MSKCC	GRCh37	5	112170759	112170772	+	frameshift_variant	Frame_Shift_Del	DEL	ACTCTTACTTACCG	ACTCTTACTTACCG	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	80	593	0	ENST00000257430.4:c.1855_1868del	p.Thr619GlufsTer10	p.T619Efs*10	ENST00000257430	NM_000038.5	619	ACTCTTACTTACCGg/g																																																																															
AR	367	MSKCC	GRCh37	X	66931404	66931404	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	108	568	1	ENST00000374690.3:c.2046G>T	p.Glu682Asp	p.E682D	ENST00000374690	NM_000044.3	682	gaG/gaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	62	519	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0025099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	83	506	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0025099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	46	472	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0025099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	42	296	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																															
APC	324	MSKCC	GRCh37	5	112175720	112175720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	48	227	0	ENST00000257430.4:c.4429C>T	p.Gln1477Ter	p.Q1477*	ENST00000257430	NM_000038.5	1477	Cag/Tag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962304	2962304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	46	583	0	ENST00000396946.4:c.2233G>A	p.Gly745Ser	p.G745S	ENST00000396946	NM_032415.4	745	Ggc/Agc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047894	180047894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	83	663	0	ENST00000261937.6:c.2281G>A	p.Ala761Thr	p.A761T	ENST00000261937	NM_182925.4	761	Gcc/Acc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31495463	31495463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	73	432	0	ENST00000344624.3:c.1685G>A	p.Arg562His	p.R562H	ENST00000344624		562	cGt/cAt																																																																															
ERF	2077	MSKCC	GRCh37	19	42753836	42753836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	97	650	4	ENST00000222329.4:c.428G>A	p.Arg143His	p.R143H	ENST00000222329	NM_006494.2	143	cGc/cAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920434	114920434	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	82	476	0	ENST00000543371.1:c.1375T>C	p.Trp459Arg	p.W459R	ENST00000543371	NM_001198531.1	459	Tgg/Cgg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622118	1622131	+	frameshift_variant	Frame_Shift_Del	DEL	TACCGGGCGGGAGG	TACCGGGCGGGAGG	-			P-0025099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	67	579	0	ENST00000344749.5:c.744_757del	p.Leu249ArgfsTer95	p.L249Rfs*95	ENST00000344749	NM_001136139.2	248	ccCCTCCCGCCCGGTAgc/ccgc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274910	41274910	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	73	414	0	ENST00000349496.5:c.1160A>T	p.Asn387Ile	p.N387I	ENST00000349496	NM_001904.3	387	aAt/aTt																																																																															
ATM	472	MSKCC	GRCh37	11	108196951	108196951	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs200940211		P-0025137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	20	317	0	ENST00000278616.4:c.6974C>T	p.Ala2325Val	p.A2325V	ENST00000278616	NM_000051.3	2325	gCg/gTg																																																																															
SETD8	387893	MSKCC	GRCh37	12	123875214	123875214	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	121	360	0	ENST00000330479.4:c.170A>G	p.Tyr57Cys	p.Y57C	ENST00000330479	NM_020382.3	57	tAc/tGc																																																																															
CDK8	1024	MSKCC	GRCh37	13	26927919	26927919	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	220	447	0	ENST00000381527.3:c.358C>G	p.Pro120Ala	p.P120A	ENST00000381527	NM_001260.1	120	Cca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0025157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	338	638	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	206	516	1	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0025157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	239	443	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953650	32953650	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	580	426	0	ENST00000380152.3:c.8951C>T	p.Ser2984Leu	p.S2984L	ENST00000380152		2984	tCa/tTa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95557411	95557411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	330	555	1	ENST00000343455.3:c.5563C>T	p.Arg1855Ter	p.R1855*	ENST00000343455	NM_177438.2	1855	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584538	48584539	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	315	542	0	ENST00000342988.3:c.713dup	p.Leu238PhefsTer26	p.L238Ffs*26	ENST00000342988	NM_005359.5	237	-/T																																																																															
MST1	4485	MSKCC	GRCh37	3	49721513	49721513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	319	638	0	ENST00000449682.2:c.2126C>T	p.Thr709Met	p.T709M	ENST00000449682	NM_020998.3	709	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175610	112175619	+	frameshift_variant	Frame_Shift_Del	DEL	CACCACCTCC	CACCACCTCC	AACACCTCG			P-0025157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	98	362	0	ENST00000257430.4:c.4319_4328delinsAACACCTCG	p.Pro1440GlnfsTer33	p.P1440Qfs*33	ENST00000257430	NM_000038.5	1440	cCACCACCTCCt/cAACACCTCGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0025170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	237	496	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	201	669	0	ENST00000269305.4:c.645T>G	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agG																																																																															
KIT	3815	MSKCC	GRCh37	4	55593431	55593431	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs72550822		P-0025170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	24	397	1	ENST00000288135.5:c.1588G>A	p.Val530Ile	p.V530I	ENST00000288135	NM_000222.2	530	Gta/Ata																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45796941	45796941	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	73	568	0	ENST00000372115.3:c.1347G>C	p.Gln449His	p.Q449H	ENST00000372115	NM_001048171.1	449	caG/caC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952148	178952158	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	ACTGAAAAGAT	ACTGAAAAGAT	-			P-0025170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	225	13	0	ENST00000263967.3:c.3204_*7del		p.*1068*	ENST00000263967	NM_006218.2	1068																																																																																
NSD1	64324	MSKCC	GRCh37	5	176636869	176636869	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	75	421	0	ENST00000439151.2:c.1469A>G	p.Lys490Arg	p.K490R	ENST00000439151	NM_022455.4	490	aAg/aGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0025190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	148	270	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0025190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	108	230	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0025190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	45	104	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																																
NCOR1	9611	MSKCC	GRCh37	17	16005024	16005024	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	200	413	0	ENST00000268712.3:c.2230C>T	p.Arg744Ter	p.R744*	ENST00000268712	NM_006311.3	744	Cga/Tga																																																																															
NF1	4763	MSKCC	GRCh37	17	29554253	29554253	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	20	203	0	ENST00000358273.4:c.2272del	p.Arg758GlufsTer2	p.R758Efs*2	ENST00000358273	NM_001042492.2	757	Aaa/aa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56167742	56167743	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGATGAG			P-0025190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	114	243	0	ENST00000399503.3:c.1313_1314insGGGATGA	p.Glu439GlyfsTer2	p.E439Gfs*2	ENST00000399503	NM_005921.1	436	aag/aaGGATGAGg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168550	56168550	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0025190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	163	248	0	ENST00000399503.3:c.1505+1G>T		p.X502_splice	ENST00000399503	NM_005921.1	502																																																																																
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0025208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	289	503	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0025208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	182	454	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575096	48575096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	89	419	1	ENST00000342988.3:c.290G>A	p.Arg97His	p.R97H	ENST00000342988	NM_005359.5	97	cGt/cAt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288489	15288489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	33	171	1	ENST00000263388.2:c.4250G>A	p.Cys1417Tyr	p.C1417Y	ENST00000263388	NM_000435.2	1417	tGc/tAc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52613119	52613119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	138	425	1	ENST00000394830.3:c.3409G>A	p.Asp1137Asn	p.D1137N	ENST00000394830	NM_018313.4	1137	Gac/Aac																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803144	1803144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	137	412	1	ENST00000260795.2:c.496G>A	p.Val166Met	p.V166M	ENST00000260795		166	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175264	112175301	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGTGTCACAGCACCCTAGAACCAAATCCAGCAGACT	GCAGTGTCACAGCACCCTAGAACCAAATCCAGCAGACT	-			P-0025208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	105	289	0	ENST00000257430.4:c.3977_4014del	p.Val1326GlyfsTer3	p.V1326Gfs*3	ENST00000257430	NM_000038.5	1325	GCAGTGTCACAGCACCCTAGAACCAAATCCAGCAGACTg/g																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056080	26056118	+	inframe_deletion	In_Frame_Del	DEL	CAGCCTTAGCAGCACTTTTGGCAGCTTTCTTGGGCTTCG	CAGCCTTAGCAGCACTTTTGGCAGCTTTCTTGGGCTTCG	-			P-0025208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	51	347	0	ENST00000343677.2:c.539_577delCGAAGCCCAAGAAAGCTGCCAAAAGTGCTGCTAAGGCTG	p.Ala180_Ala192del	p.A180_A192del	ENST00000343677	NM_005319.3	180	gCGAAGCCCAAGAAAGCTGCCAAAAGTGCTGCTAAGGCTGtg/gtg																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0025228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	22	401	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061223	38061228	+	inframe_deletion	In_Frame_Del	DEL	TCTCGA	TCTCGA	-			P-0025228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	106	274	1	ENST00000250448.2:c.761_766del	p.Phe254_Asn256delinsTyr	p.F254_N256delinsY	ENST00000250448	NM_004496.3	254	tTCGAGAac/tac																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162916	38162916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	85	346	1	ENST00000317025.8:c.2290C>T	p.Arg764Cys	p.R764C	ENST00000317025	NM_023034.1	764	Cgt/Tgt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413070	63413070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	46	206	0	ENST00000330258.3:c.97G>A	p.Ala33Thr	p.A33T	ENST00000330258	NM_152424.3	33	Gca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0025244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	363	592	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0025244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	183	559	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0025244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	462	637	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001366	29001366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	571	391	0	ENST00000282397.4:c.1366G>A	p.Ala456Thr	p.A456T	ENST00000282397	NM_002019.4	456	Gca/Aca																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281699	49281699	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1287	309	855	0	ENST00000282018.3:c.746T>C	p.Ile249Thr	p.I249T	ENST00000282018	NM_020377.2	249	aTc/aCc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198260834	198260834	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	187	642	0	ENST00000335508.6:c.3485G>C	p.Gly1162Ala	p.G1162A	ENST00000335508	NM_012433.2	1162	gGa/gCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539348	187539348	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	138	487	0	ENST00000441802.2:c.8392C>G	p.Gln2798Glu	p.Q2798E	ENST00000441802	NM_005245.3	2798	Caa/Gaa																																																																															
APC	324	MSKCC	GRCh37	5	112175784	112175799	+	frameshift_variant	Frame_Shift_Del	DEL	ATGGATTTTCTTGTTC	ATGGATTTTCTTGTTC	-			P-0025244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	184	346	0	ENST00000257430.4:c.4495_4510del	p.Gly1499ProfsTer3	p.G1499Pfs*3	ENST00000257430	NM_000038.5	1498	gATGGATTTTCTTGTTCa/ga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169019	32169019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	174	722	0	ENST00000375023.3:c.4014G>A	p.Met1338Ile	p.M1338I	ENST00000375023	NM_004557.3	1338	atG/atA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248980	55248981	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	TCCAGGAAGCCT			P-0025284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1418	82	375	0	ENST00000275493.2:c.2284-5_2290dup		p.X762_splice	ENST00000275493	NM_005228.3	762																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151873717	151873717	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	140	541	0	ENST00000262189.6:c.8821C>A	p.Pro2941Thr	p.P2941T	ENST00000262189	NM_170606.2	2941	Cca/Aca																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0025335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	132	426	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	189	689	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767326		P-0025342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	119	355	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0025362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	272	563	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0025362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	89	711	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0025362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	439	618	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733279	40733279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201275244		P-0025362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	72	611	0	ENST00000373198.4:c.3527G>A	p.Arg1176His	p.R1176H	ENST00000373198	NM_133170.3	1176	cGt/cAt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396925	139396925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	44	384	3	ENST00000277541.6:c.5183C>T	p.Pro1728Leu	p.P1728L	ENST00000277541	NM_017617.3	1728	cCg/cTg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528647	89528647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	38	235	0	ENST00000336596.2:c.2947G>A	p.Val983Met	p.V983M	ENST00000336596	NM_005233.5	983	Gtg/Atg																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20159747	20159747	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	69	441	0	ENST00000379607.5:c.12T>A	p.Asn4Lys	p.N4K	ENST00000379607	NM_001412.3	4	aaT/aaA																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123325123	123325123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	60	671	1	ENST00000358487.5:c.205G>A	p.Val69Met	p.V69M	ENST00000358487	NM_000141.4	69	Gtg/Atg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39721179	39721179	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	430	710	0	ENST00000361337.2:c.682G>T	p.Ala228Ser	p.A228S	ENST00000361337	NM_003286.2	228	Gcc/Tcc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52696281	52696283	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0025362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	301	549	0	ENST00000394830.3:c.394_396del	p.Pro132del	p.P132del	ENST00000394830	NM_018313.4	132	CCT/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0025406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	150	719	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0025406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	122	322	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0025406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	181	816	3	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30128020	30128020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1452	137	734	0	ENST00000263025.4:c.1109G>A	p.Arg370His	p.R370H	ENST00000263025	NM_002746.2	370	cGc/cAc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561534	9561534	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1159	178	709	0	ENST00000353224.5:c.248A>G	p.Asn83Ser	p.N83S	ENST00000353224	NM_177990.2	83	aAc/aGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0025409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	79	600	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729740	162729740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	67	511	0	ENST00000367921.3:c.826G>A	p.Asp276Asn	p.D276N	ENST00000367921	NM_006182.2	276	Gac/Aac																																																																															
LATS2	26524	MSKCC	GRCh37	13	21619837	21619837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	69	342	0	ENST00000382592.4:c.329C>T	p.Ala110Val	p.A110V	ENST00000382592	NM_014572.2	110	gCa/gTa																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986876	36986877	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	37	143	0	ENST00000354822.5:c.812dup	p.Thr272HisfsTer167	p.T272Hfs*167	ENST00000354822	NM_001079668.2	271	ggc/ggGc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986961	36986961	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	44	325	2	ENST00000354822.5:c.728G>T	p.Arg243Leu	p.R243L	ENST00000354822	NM_001079668.2	243	cGc/cTc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59821865	59821865	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	71	644	0	ENST00000259008.2:c.2185G>T	p.Gly729Ter	p.G729*	ENST00000259008	NM_032043.2	729	Gga/Tga																																																																															
ABL1	25	MSKCC	GRCh37	9	133759495	133759496	+	stop_gained	Nonsense_Mutation	DNP	GA	GA	TT			P-0025409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	65	497	1	ENST00000318560.5:c.1818_1819delinsTT	p.Lys606_Lys607delinsAsnTer	p.K606_K607delinsN*	ENST00000318560	NM_005157.4	606	aaGAag/aaTTag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	28	700	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	48	628	1	ENST00000269305.4:c.592del	p.Glu198LysfsTer49	p.E198Kfs*49	ENST00000269305	NM_001126112.2	198	Gaa/aa																																																																															
KIT	3815	MSKCC	GRCh37	4	55602909	55602909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	32	496	0	ENST00000288135.5:c.2619G>T	p.Met873Ile	p.M873I	ENST00000288135	NM_000222.2	873	atG/atT																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100403	8100403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	45	549	0	ENST00000346208.3:c.377C>A	p.Ser126Tyr	p.S126Y	ENST00000346208		126	tCc/tAc																																																																															
BTK	695	MSKCC	GRCh37	X	100613426	100613426	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	29	498	0	ENST00000308731.7:c.975-1G>T		p.X325_splice	ENST00000308731	NM_000061.2	325																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71942195	71942195	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	55	544	0	ENST00000298229.2:c.1463delG	p.Gly488AlafsTer43	p.G488Afs*43	ENST00000298229	NM_001567.3	487	Ggg/gg																																																																															
HGF	3082	MSKCC	GRCh37	7	81355246	81355246	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	31	466	0	ENST00000222390.5:c.1128C>A	p.Tyr376Ter	p.Y376*	ENST00000222390	NM_000601.4	376	taC/taA																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748153	72748153	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	33	377	0	ENST00000357731.5:c.25G>T	p.Gly9Cys	p.G9C	ENST00000357731	NM_173808.2	9	Ggt/Tgt																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625222	69625222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	49	531	0	ENST00000334134.2:c.571G>T	p.Val191Leu	p.V191L	ENST00000334134	NM_005247.2	191	Gtg/Ttg																																																																															
RB1	5925	MSKCC	GRCh37	13	49039144	49039144	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	14	344	1	ENST00000267163.4:c.2222G>T	p.Arg741Leu	p.R741L	ENST00000267163	NM_000321.2	741	cGt/cTt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004886	16004886	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	50	535	0	ENST00000268712.3:c.2368G>T	p.Ala790Ser	p.A790S	ENST00000268712	NM_006311.3	790	Gct/Tct																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604780	48604780	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	26	439	0	ENST00000342988.3:c.1602G>T	p.Gln534His	p.Q534H	ENST00000342988	NM_005359.5	534	caG/caT																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662653	227662653	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	28	444	0	ENST00000305123.5:c.802A>T	p.Ser268Cys	p.S268C	ENST00000305123	NM_005544.2	268	Agc/Tgc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252986	36252986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	39	459	0	ENST00000300305.3:c.376G>T	p.Asp126Tyr	p.D126Y	ENST00000300305		126	Gat/Tat																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143352400	143352400	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	39	577	1	ENST00000262992.4:c.13G>T	p.Glu5Ter	p.E5*	ENST00000262992	NM_001101669.1	5	Gag/Tag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30682891	30682891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	45	636	0	ENST00000376406.3:c.62G>T	p.Ser21Ile	p.S21I	ENST00000376406	NM_014641.2	21	aGt/aTt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2952954	2952954	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	37	533	0	ENST00000396946.4:c.2986G>C	p.Gly996Arg	p.G996R	ENST00000396946	NM_032415.4	996	Gga/Cga																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38196095	38196095	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	28	707	1	ENST00000317025.8:c.706G>T	p.Glu236Ter	p.E236*	ENST00000317025	NM_023034.1	236	Gaa/Taa																																																																															
TEK	7010	MSKCC	GRCh37	9	27203009	27203009	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	39	607	0	ENST00000380036.4:c.2101G>T	p.Gly701Cys	p.G701C	ENST00000380036	NM_000459.3	701	Ggc/Tgc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039305	47039305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	38	570	0	ENST00000329236.7:c.697C>T	p.His233Tyr	p.H233Y	ENST00000329236	NM_001204466.1	233	Cac/Tac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044482	47044482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	33	532	0	ENST00000329236.7:c.1745G>C	p.Arg582Pro	p.R582P	ENST00000329236	NM_001204466.1	582	cGc/cCc																																																																															
ALK	238	MSKCC	GRCh37	2	29474026	29474026	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147858673		P-0025413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	206	797	0	ENST00000389048.3:c.2149G>A	p.Glu717Lys	p.E717K	ENST00000389048	NM_004304.4	717	Gag/Aag																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348879	11348879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	107	305	0	ENST00000332029.2:c.457C>T	p.His153Tyr	p.H153Y	ENST00000332029	NM_003745.1	153	Cac/Tac																																																																															
POLE	5426	MSKCC	GRCh37	12	133201319	133201319	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	161	752	0	ENST00000320574.5:c.6825G>C	p.Glu2275Asp	p.E2275D	ENST00000320574	NM_006231.2	2275	gaG/gaC																																																																															
MGA	23269	MSKCC	GRCh37	15	42041582	42041582	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0025413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	205	697	0	ENST00000219905.7:c.5777C>G	p.Ser1926Ter	p.S1926*	ENST00000219905	NM_001164273.1	1926	tCa/tGa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207169	1207169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	194	818	1	ENST00000326873.7:c.257G>A	p.Arg86Gln	p.R86Q	ENST00000326873	NM_000455.4	86	cGa/cAa																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18271962	18271962	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	103	383	0	ENST00000222254.8:c.565G>T	p.Glu189Ter	p.E189*	ENST00000222254	NM_005027.3	189	Gag/Tag																																																																															
REL	5966	MSKCC	GRCh37	2	61149395	61149395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	118	575	0	ENST00000295025.8:c.1585G>C	p.Asp529His	p.D529H	ENST00000295025	NM_002908.2	529	Gac/Cac																																																																															
REL	5966	MSKCC	GRCh37	2	61149488	61149488	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	120	521	0	ENST00000295025.8:c.1678G>C	p.Asp560His	p.D560H	ENST00000295025	NM_002908.2	560	Gat/Cat																																																																															
APC	324	MSKCC	GRCh37	5	112176595	112176595	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	111	471	0	ENST00000257430.4:c.5304G>C	p.Lys1768Asn	p.K1768N	ENST00000257430	NM_000038.5	1768	aaG/aaC																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519380	137519380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	61	320	0	ENST00000367739.4:c.1258G>A	p.Glu420Lys	p.E420K	ENST00000367739	NM_000416.2	420	Gaa/Aaa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859576	151859576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	141	670	0	ENST00000262189.6:c.11086C>T	p.Gln3696Ter	p.Q3696*	ENST00000262189	NM_170606.2	3696	Caa/Taa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	83	537	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7980007	7980007	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147992320		P-0025436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	107	524	1	ENST00000319144.4:c.1330G>A	p.Val444Ile	p.V444I	ENST00000319144	NM_001139.2	444	Gtt/Att																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871129	12871129	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	37	182	0	ENST00000228872.4:c.357del	p.Ile119MetfsTer26	p.I119Mfs*26	ENST00000228872	NM_004064.3	119	aTt/at																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106352	27106352	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	90	413	0	ENST00000324856.7:c.5963T>G	p.Ile1988Ser	p.I1988S	ENST00000324856	NM_006015.4	1988	aTt/aGt																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761072	59761072	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	121	501	0	ENST00000259008.2:c.3335A>T	p.Asp1112Val	p.D1112V	ENST00000259008	NM_032043.2	1112	gAt/gTt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702178	47702178	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	68	327	0	ENST00000233146.2:c.1774A>G	p.Met592Val	p.M592V	ENST00000233146	NM_000251.2	592	Atg/Gtg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0025443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	15	468	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	22	608	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912660		P-0025443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	96	714	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52723440	52723440	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0025443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	72	512	2	ENST00000322088.6:c.1303-2A>T		p.X435_splice	ENST00000322088	NM_014225.5	435																																																																																
MAP3K13	9175	MSKCC	GRCh37	3	185191326	185191326	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	73	471	1	ENST00000265026.3:c.2207G>T	p.Arg736Met	p.R736M	ENST00000265026	NM_004721.4	736	aGg/aTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535412	66535412	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	22	204	0	ENST00000273854.3:c.49G>T	p.Gly17Cys	p.G17C	ENST00000273854	NM_004439.5	17	Ggc/Tgc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681090	30681090	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61754764		P-0025443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	58	397	2	ENST00000376406.3:c.629C>T	p.Pro210Leu	p.P210L	ENST00000376406	NM_014641.2	210	cCg/cTg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372038	55372038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	51	407	0	ENST00000297316.4:c.728G>T	p.Gly243Val	p.G243V	ENST00000297316	NM_022454.3	243	gGg/gTg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015085	37015085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	124	649	0	ENST00000358127.4:c.319C>A	p.Pro107Thr	p.P107T	ENST00000358127	NM_001280556.1	107	Ccc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0025448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	59	556	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155725	56155726	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0025448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	40	401	0	ENST00000399503.3:c.819_820delAG	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	273	AGa/a																																																																															
CBFB	865	MSKCC	GRCh37	16	67063684	67063684	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	12	297	1	ENST00000412916.2:c.133C>T	p.Gln45Ter	p.Q45*	ENST00000412916		45	Cag/Tag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161703	56161704	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	49	585	0	ENST00000399503.3:c.1203dup	p.Ala402SerfsTer5	p.A402Sfs*5	ENST00000399503	NM_005921.1	400	-/A																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	446	570	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0025610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	673	578	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0025610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	368	399	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	349	231	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30133009	30133009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	459	518	3	ENST00000331968.5:c.592G>A	p.Gly198Ser	p.G198S	ENST00000331968	NM_002742.2	198	Ggt/Agt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1142	71	734	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36208923	36208925	+	start_lost,inframe_deletion	Translation_Start_Site	DEL	GGC	GGC	-			P-0025359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	10	52	0	ENST00000222270.7:c.14_16del	p.Ala5del	p.A5del	ENST00000222270	NM_014727.1	1	atGGCg/atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	263	652	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0025361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	251	700	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115280099	115280099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	146	590	1	ENST00000438362.2:c.533G>T	p.Arg178Leu	p.R178L	ENST00000438362	NM_001242891.1	178	cGt/cTt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41400157	41400157	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	201	611	0	ENST00000373198.4:c.602T>C	p.Val201Ala	p.V201A	ENST00000373198	NM_133170.3	201	gTg/gCg																																																																															
TET2	54790	MSKCC	GRCh37	4	106193892	106193892	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	152	320	1	ENST00000380013.4:c.4354C>T	p.Arg1452Ter	p.R1452*	ENST00000380013	NM_001127208.2	1452	Cga/Tga																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152853898	152853898	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	187	282	0	ENST00000406277.2:c.666C>A	p.Asp222Glu	p.D222E	ENST00000406277	NM_152274.4	222	gaC/gaA																																																																															
AKT1	207	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	425	565	0	ENST00000349310.3:c.155T>G	p.Leu52Arg	p.L52R	ENST00000349310	NM_001014432.1	52	cTc/cGc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67663317	67663317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	246	590	0	ENST00000264010.4:c.1718A>G	p.His573Arg	p.H573R	ENST00000264010	NM_006565.3	573	cAt/cGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111511	8111511	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	259	698	0	ENST00000346208.3:c.998del	p.Asn333MetfsTer22	p.N333Mfs*22	ENST00000346208		333	Aat/at																																																																															
RUNX1	861	MSKCC	GRCh37	21	36231830	36231830	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	265	642	0	ENST00000300305.3:c.554A>C	p.Gln185Pro	p.Q185P	ENST00000300305		185	cAa/cCa																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540213	23540214	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTCTGG			P-0025367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	55	287	0	ENST00000380871.4:c.184_189dup	p.Pro62_Glu63dup	p.P62_E63dup	ENST00000380871	NM_006167.3	62	-/CCAGAG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	33	627	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0025387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	49	667	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62325754	62325754	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145335410		P-0025387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	68	500	0	ENST00000508582.2:c.3094G>A	p.Val1032Met	p.V1032M	ENST00000508582		1032	Gtg/Atg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039620	47039620	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	48	256	1	ENST00000329236.7:c.838C>T	p.Gln280Ter	p.Q280*	ENST00000329236	NM_001204466.1	280	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0025392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	83	414	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
FYN	2534	MSKCC	GRCh37	6	112035608	112035608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	117	630	1	ENST00000368678.4:c.286C>T	p.Arg96Trp	p.R96W	ENST00000368678		96	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0025398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	42	603	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs864622237		P-0022070-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			821	614	569	0	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577523	7577523	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022070-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			734	652	549	0	ENST00000269305.4:c.758C>A	p.Thr253Asn	p.T253N	ENST00000269305	NM_001126112.2	253	aCc/aAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256418	16256438	+	inframe_deletion	In_Frame_Del	DEL	AAAGGATGGATCATGTCGATT	AAAGGATGGATCATGTCGATT	-			P-0022070-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			456	604	653	0	ENST00000375759.3:c.3683_3703del	p.Lys1228_Phe1235delinsIle	p.K1228_F1235delinsI	ENST00000375759	NM_015001.2	1228	aAAAGGATGGATCATGTCGATTtt/att																																																																															
MGA	23269	MSKCC	GRCh37	15	42003494	42003495	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0022070-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			119	618	551	2	ENST00000219905.7:c.3032dup	p.Tyr1011Ter	p.Y1011*	ENST00000219905	NM_001164273.1	1011	tac/tAac																																																																															
ALK	238	MSKCC	GRCh37	2	29445457	29445457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022070-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			630	290	514	0	ENST00000389048.3:c.3376G>A	p.Ala1126Thr	p.A1126T	ENST00000389048	NM_004304.4	1126	Gcc/Acc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962379	2962379	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022070-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			676	243	539	0	ENST00000396946.4:c.2158C>T	p.Arg720Ter	p.R720*	ENST00000396946	NM_032415.4	720	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0025330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	115	696	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0025330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	68	693	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
PARP1	142	MSKCC	GRCh37	1	226550845	226550845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	45	521	0	ENST00000366794.5:c.2803G>T	p.Ala935Ser	p.A935S	ENST00000366794	NM_001618.3	935	Gct/Tct																																																																															
TET1	80312	MSKCC	GRCh37	10	70332872	70332872	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	63	585	0	ENST00000373644.4:c.777A>T	p.Lys259Asn	p.K259N	ENST00000373644	NM_030625.2	259	aaA/aaT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420190	49420190	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	46	638	0	ENST00000301067.7:c.15559G>T	p.Ala5187Ser	p.A5187S	ENST00000301067	NM_003482.3	5187	Gcc/Tcc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992183	72992183	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	56	605	0	ENST00000268489.5:c.1862A>T	p.Gln621Leu	p.Q621L	ENST00000268489	NM_006885.3	621	cAg/cTg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426725	47426725	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	87	560	0	ENST00000377045.4:c.970G>T	p.Val324Leu	p.V324L	ENST00000377045	NM_001654.4	324	Gtg/Ttg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411696	63411696	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	87	715	0	ENST00000330258.3:c.1471C>A	p.Arg491Ser	p.R491S	ENST00000330258	NM_152424.3	491	Cgc/Agc																																																																															
MED12	9968	MSKCC	GRCh37	X	70357717	70357717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	81	738	0	ENST00000374080.3:c.5968C>A	p.His1990Asn	p.H1990N	ENST00000374080		1990	Cac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0025341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	78	797	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
ATM	472	MSKCC	GRCh37	11	108236104	108236104	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	29	648	0	ENST00000278616.4:c.9040C>T	p.Gln3014Ter	p.Q3014*	ENST00000278616	NM_000051.3	3014	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	360	757	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	230	432	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29665144	29665144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	402	658	1	ENST00000358273.4:c.6806G>A	p.Arg2269His	p.R2269H	ENST00000358273	NM_001042492.2	2269	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928067	178928067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	347	664	0	ENST00000263967.3:c.1345C>T	p.Pro449Ser	p.P449S	ENST00000263967	NM_006218.2	449	Cct/Tct																																																																															
JUN	3725	MSKCC	GRCh37	1	59248014	59248015	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GACA			P-0025348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	284	580	0	ENST00000371222.2:c.725_728dup	p.Pro244ValfsTer67	p.P244Vfs*67	ENST00000371222	NM_002228.3	243	tcc/tcTGTCc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166148	118166148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	123	473	0	ENST00000369448.3:c.658G>A	p.Glu220Lys	p.E220K	ENST00000369448	NM_017709.3	220	Gag/Aag																																																																															
MGA	23269	MSKCC	GRCh37	15	41988400	41988400	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	179	609	0	ENST00000219905.7:c.1192G>C	p.Glu398Gln	p.E398Q	ENST00000219905	NM_001164273.1	398	Gaa/Caa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265915	41266316	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATA	TATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATA	-			P-0025348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	38	57	0	ENST00000349496.5:c.14-102_241+72del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106545721	106545721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	354	685	1	ENST00000359195.3:c.3198G>T	p.Lys1066Asn	p.K1066N	ENST00000359195	NM_002649.2	1066	aaG/aaT																																																																															
RAD21	5885	MSKCC	GRCh37	8	117868953	117868953	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	73	574	0	ENST00000297338.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000297338	NM_006265.2	249	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	235	653	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885793	111885793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	165	635	0	ENST00000341259.2:c.1415G>A	p.Cys472Tyr	p.C472Y	ENST00000341259	NM_005475.2	472	tGc/tAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942562	71942562	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	118	488	0	ENST00000298229.2:c.1518G>A	p.Trp506Ter	p.W506*	ENST00000298229	NM_001567.3	506	tgG/tgA																																																																															
CD276	80381	MSKCC	GRCh37	15	73996111	73996111	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	47	689	0	ENST00000318443.5:c.845A>G	p.Asn282Ser	p.N282S	ENST00000318443	NM_001024736.1	282	aAc/aGc																																																																															
CDH1	999	MSKCC	GRCh37	16	68849663	68849663	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0025353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	127	421	0	ENST00000261769.5:c.1565+1del		p.X522_splice	ENST00000261769	NM_004360.3	522																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	7	522	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0024896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	17	439	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0025326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	294	620	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262604	16262604	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	32	346	0	ENST00000375759.3:c.9869C>A	p.Thr3290Asn	p.T3290N	ENST00000375759	NM_015001.2	3290	aCc/aAc																																																																															
STK40	83931	MSKCC	GRCh37	1	36820827	36820827	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	77	491	0	ENST00000373129.3:c.550G>C	p.Val184Leu	p.V184L	ENST00000373129	NM_032017.1	184	Gtg/Ctg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061178	38061185	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	GCTTCTCG	GCTTCTCG	-			P-0025329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	90	405	1	ENST00000250448.2:c.804_811del	p.Cys268Ter	p.C268*	ENST00000250448	NM_004496.3	268	tgCGAGAAGCag/tgag																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696434	47696434	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	112	591	0	ENST00000347630.2:c.389A>T	p.Asp130Val	p.D130V	ENST00000347630	NM_001007230.1	130	gAc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	144	421	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CBL	867	MSKCC	GRCh37	11	119170291	119170291	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	28	317	1	ENST00000264033.4:c.2521C>T	p.Gln841Ter	p.Q841*	ENST00000264033	NM_005188.3	841	Cag/Tag																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870982	12870992	+	frameshift_variant	Frame_Shift_Del	DEL	TAGAGGGCAAG	TAGAGGGCAAG	-			P-0025333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	116	364	0	ENST00000228872.4:c.211_221del	p.Glu71ArgfsTer50	p.E71Rfs*50	ENST00000228872	NM_004064.3	70	cTAGAGGGCAAG/c																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0025334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	85	450	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164754	36164773	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGAGCCCATGGCCGACAT	GCCGAGCCCATGGCCGACAT	-			P-0025334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	89	385	0	ENST00000300305.3:c.1102_1121del	p.Met368HisfsTer225	p.M368Hfs*225	ENST00000300305		368	ATGTCGGCCATGGGCTCGGCc/c																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	198	646	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	103	616	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098975	178098975	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1328994103		P-0025354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	75	382	0	ENST00000397062.3:c.70T>C	p.Trp24Arg	p.W24R	ENST00000397062	NM_006164.4	24	Tgg/Cgg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731172	162731172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	260	449	3	ENST00000367921.3:c.1027G>T	p.Ala343Ser	p.A343S	ENST00000367921	NM_006182.2	343	Gcc/Tcc																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589632	69589633	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0025354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	69	334	1	ENST00000168712.1:c.220_221delinsTT	p.Gly74Phe	p.G74F	ENST00000168712	NM_002007.2	74	GGc/TTc																																																																															
PGR	5241	MSKCC	GRCh37	11	100909941	100909941	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	51	606	0	ENST00000325455.5:c.2708T>C	p.Val903Ala	p.V903A	ENST00000325455	NM_001202474.3	903	gTt/gCt																																																																															
DIS3	22894	MSKCC	GRCh37	13	73335854	73335854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	133	510	0	ENST00000377767.4:c.2441G>T	p.Cys814Phe	p.C814F	ENST00000377767	NM_014953.3	814	tGt/tTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220405	1220405	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0025354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	181	643	0	ENST00000326873.7:c.498C>G	p.Tyr166Ter	p.Y166*	ENST00000326873	NM_000455.4	166	taC/taG																																																																															
BCL6	604	MSKCC	GRCh37	3	187447492	187447492	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	87	583	0	ENST00000232014.4:c.701G>T	p.Ser234Ile	p.S234I	ENST00000232014	NM_001130845.1	234	aGt/aTt																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730127	41730127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	128	359	0	ENST00000242208.4:c.402G>T	p.Lys134Asn	p.K134N	ENST00000242208	NM_002192.2	134	aaG/aaT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484168	8484168	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	192	575	1	ENST00000356435.5:c.3364G>T	p.Gly1122Cys	p.G1122C	ENST00000356435		1122	Ggc/Tgc																																																																															
ATRX	546	MSKCC	GRCh37	X	76813110	76813110	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	85	536	0	ENST00000373344.5:c.6511A>C	p.Met2171Leu	p.M2171L	ENST00000373344	NM_000489.3	2171	Atg/Ctg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685311	89685312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0025222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	129	333	0	ENST00000371953.3:c.208_209dup	p.Cys71PhefsTer29	p.C71Ffs*29	ENST00000371953	NM_000314.4	69	aat/aaTCt																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112892446	112892446	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	126	419	0	ENST00000351677.2:c.604A>G	p.Met202Val	p.M202V	ENST00000351677	NM_002834.3	202	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579372	7579393	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCTGGTAGGTTTTCTGGGAA	GCCCTGGTAGGTTTTCTGGGAA	-			P-0025222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	99	506	0	ENST00000269305.4:c.294_315del	p.Ser99AlafsTer17	p.S99Afs*17	ENST00000269305	NM_001126112.2	98	ccTTCCCAGAAAACCTACCAGGGC/cc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59858254	59858254	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	143	460	0	ENST00000259008.2:c.1741C>G	p.Arg581Gly	p.R581G	ENST00000259008	NM_032043.2	581	Cga/Gga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971042	21971042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	111	264	2	ENST00000304494.5:c.316G>A	p.Val106Met	p.V106M	ENST00000304494	NM_000077.4	106	Gtg/Atg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	165	350	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0025225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	94	463	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740573	145740573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	91	563	1	ENST00000428558.2:c.1444C>T	p.Arg482Cys	p.R482C	ENST00000428558	NM_004260.3	482	Cgc/Tgc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53230895	53230895	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	93	506	0	ENST00000375401.3:c.1898A>G	p.Tyr633Cys	p.Y633C	ENST00000375401	NM_004187.3	633	tAc/tGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0025255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	222	769	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72748041	72748041	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	235	726	0	ENST00000357731.5:c.137A>G	p.Asp46Gly	p.D46G	ENST00000357731	NM_173808.2	46	gAc/gGc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37865585	37865585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	58	730	0	ENST00000269571.5:c.454G>A	p.Gly152Arg	p.G152R	ENST00000269571		152	Ggg/Agg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213906	66213906	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	22	554	0	ENST00000273854.3:c.2524A>G	p.Ile842Val	p.I842V	ENST00000273854	NM_004439.5	842	Atc/Gtc																																																																															
APC	324	MSKCC	GRCh37	5	112174559	112174559	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	104	544	1	ENST00000257430.4:c.3268C>T	p.Gln1090Ter	p.Q1090*	ENST00000257430	NM_000038.5	1090	Caa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	83	353	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	100	407	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs864622237		P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	133	562	0	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	117	620	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193107231	193107231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	53	292	0	ENST00000367435.3:c.440G>A	p.Arg147His	p.R147H	ENST00000367435	NM_024529.4	147	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89712013	89712014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	74	219	0	ENST00000371953.3:c.632dup	p.Cys211TrpfsTer32	p.C211Wfs*32	ENST00000371953	NM_000314.4	211	tgc/tGgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448103	49448103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	117	461	2	ENST00000301067.7:c.497C>T	p.Ser166Leu	p.S166L	ENST00000301067	NM_003482.3	166	tCa/tTa																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129381	64129381	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	69	580	0	ENST00000334205.4:c.813C>G	p.Asp271Glu	p.D271E	ENST00000334205	NM_003942.2	271	gaC/gaG																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434530	110434530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	133	499	1	ENST00000375856.3:c.3871G>T	p.Gly1291Trp	p.G1291W	ENST00000375856	NM_003749.2	1291	Ggg/Tgg																																																																															
MGA	23269	MSKCC	GRCh37	15	42058342	42058342	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201470885		P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	72	276	0	ENST00000219905.7:c.8062G>A	p.Val2688Ile	p.V2688I	ENST00000219905	NM_001164273.1	2688	Gtc/Atc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713262	30713263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	97	368	0	ENST00000359013.4:c.663dup	p.Leu222AlafsTer27	p.L222Afs*27	ENST00000359013	NM_001024847.2	221	aag/aaGg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332628	153332628	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	119	443	0	ENST00000281708.4:c.328G>T	p.Glu110Ter	p.E110*	ENST00000281708	NM_033632.3	110	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112176016	112176016	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	73	298	0	ENST00000257430.4:c.4725del	p.Glu1576LysfsTer74	p.E1576Kfs*74	ENST00000257430	NM_000038.5	1575	ctA/ct																																																																															
NSD1	64324	MSKCC	GRCh37	5	176673712	176673712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	90	396	1	ENST00000439151.2:c.4412G>A	p.Arg1471Gln	p.R1471Q	ENST00000439151	NM_022455.4	1471	cGa/cAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0025344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	65	540	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115859	8115875	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTGAGCCACATCTCG	CCCTGAGCCACATCTCG	-			P-0021199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			593	35	531	0	ENST00000346208.3:c.1209_1225del	p.Ser404GlnfsTer97	p.S404Qfs*97	ENST00000346208		402	tCCCTGAGCCACATCTCG/t																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53247124	53247124	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			382	49	358	0	ENST00000375401.3:c.376G>T	p.Glu126Ter	p.E126*	ENST00000375401	NM_004187.3	126	Gaa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0024839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	17	608	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0024839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	16	542	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929134	32929134	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	18	566	2	ENST00000380152.3:c.7147del	p.Tyr2383IlefsTer11	p.Y2383Ifs*11	ENST00000380152		2382	Ttt/tt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151851406	151851406	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	19	640	0	ENST00000262189.6:c.12085C>G	p.Pro4029Ala	p.P4029A	ENST00000262189	NM_170606.2	4029	Cca/Gca																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538964	23538964	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	103	562	0	ENST00000380871.4:c.475A>G	p.Lys159Glu	p.K159E	ENST00000380871	NM_006167.3	159	Aag/Gag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748939	43748939	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	11	958	0	ENST00000382044.4:c.1867del	p.Asp623IlefsTer25	p.D623Ifs*25	ENST00000382044	NM_001141980.1	623	Gat/at																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092815	27092815	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	64	582	0	ENST00000324856.7:c.2840delC	p.Pro947HisfsTer21	p.P947Hfs*21	ENST00000324856	NM_006015.4	946	Ccc/cc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10286283	10286283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	135	649	0	ENST00000340748.4:c.533G>A	p.Arg178Gln	p.R178Q	ENST00000340748		178	cGg/cAg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514015	103514015	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	36	558	0	ENST00000355739.4:c.831G>C	p.Glu277Asp	p.E277D	ENST00000355739	NM_000123.3	277	gaG/gaC																																																																															
BIRC3	330	MSKCC	GRCh37	11	102201920	102201920	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	73	316	0	ENST00000263464.3:c.1272A>T	p.Glu424Asp	p.E424D	ENST00000263464	NM_001165.4	424	gaA/gaT																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914982	32914982	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	103	581	2	ENST00000380152.3:c.6490C>T	p.Gln2164Ter	p.Q2164*	ENST00000380152		2164	Cag/Tag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303080	15303080	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	63	1052	0	ENST00000263388.2:c.370C>G	p.Leu124Val	p.L124V	ENST00000263388	NM_000435.2	124	Ctc/Gtc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158636950	158636950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	136	564	0	ENST00000263640.3:c.230G>T	p.Gly77Val	p.G77V	ENST00000263640	NM_001105.4	77	gGa/gTa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968305	134968305	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	66	712	1	ENST00000398015.3:c.2818C>A	p.Leu940Ile	p.L940I	ENST00000398015	NM_004441.4	940	Ctc/Atc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56171055	56171055	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0025243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	34	337	0	ENST00000399503.3:c.1883C>G	p.Ser628Ter	p.S628*	ENST00000399503	NM_005921.1	628	tCa/tGa																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679939	30679939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	86	454	0	ENST00000376406.3:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000376406	NM_014641.2	594	Gat/Aat																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157517444	157517444	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	47	526	2	ENST00000346085.5:c.4008C>A	p.Asp1336Glu	p.D1336E	ENST00000346085	NM_020732.3	1336	gaC/gaA																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87339257	87339273	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ACCTCACTGTGCATTGT	ACCTCACTGTGCATTGT	-			P-0025243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	51	618	0	ENST00000277120.3:c.841_853+4del		p.X281_splice	ENST00000277120		281																																																																																
MTOR	2475	MSKCC	GRCh37	1	11189867	11189867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	161	476	2	ENST00000361445.4:c.5642C>T	p.Thr1881Met	p.T1881M	ENST00000361445	NM_004958.3	1881	aCg/aTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	110	617	1	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120491731	120491731	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	65	364	0	ENST00000256646.2:c.2498T>C	p.Val833Ala	p.V833A	ENST00000256646	NM_024408.3	833	gTa/gCa																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874572	155874572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	101	595	1	ENST00000368323.3:c.187C>T	p.Arg63Cys	p.R63C	ENST00000368323	NM_006912.5	63	Cgt/Tgt																																																																															
TET1	80312	MSKCC	GRCh37	10	70412277	70412277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	42	303	0	ENST00000373644.4:c.4387G>A	p.Ala1463Thr	p.A1463T	ENST00000373644	NM_030625.2	1463	Gca/Aca																																																																															
MEN1	4221	MSKCC	GRCh37	11	64571907	64571907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	331	653	0	ENST00000337652.1:c.1747C>T	p.Gln583Ter	p.Q583*	ENST00000337652	NM_130803.2	583	Caa/Taa																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625281	69625281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35983315		P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	97	438	0	ENST00000334134.2:c.512G>A	p.Arg171His	p.R171H	ENST00000334134	NM_005247.2	171	cGc/cAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948668	71948668	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	98	438	1	ENST00000298229.2:c.3380C>A	p.Ala1127Asp	p.A1127D	ENST00000298229	NM_001567.3	1127	gCc/gAc																																																																															
YAP1	10413	MSKCC	GRCh37	11	102033228	102033228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	105	481	0	ENST00000282441.5:c.614C>T	p.Ala205Val	p.A205V	ENST00000282441	NM_001130145.2	205	gCc/gTc																																																																															
ATM	472	MSKCC	GRCh37	11	108099951	108099951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	35	314	0	ENST00000278616.4:c.232G>A	p.Ala78Thr	p.A78T	ENST00000278616	NM_000051.3	78	Gca/Aca																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118348837	118348837	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	85	311	0	ENST00000534358.1:c.3490C>A	p.Pro1164Thr	p.P1164T	ENST00000534358	NM_005933.3	1164	Cct/Act																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	131	599	3	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856574	111856574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	46	132	0	ENST00000341259.2:c.625G>A	p.Ala209Thr	p.A209T	ENST00000341259	NM_005475.2	209	Gcc/Acc																																																																															
GREM1	26585	MSKCC	GRCh37	15	33022911	33022911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	68	338	0	ENST00000300177.4:c.20C>T	p.Thr7Met	p.T7M	ENST00000300177	NM_001191322.1	7	aCg/aTg																																																																															
MGA	23269	MSKCC	GRCh37	15	41991059	41991059	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	102	365	0	ENST00000219905.7:c.2014-2A>G		p.X672_splice	ENST00000219905	NM_001164273.1	672																																																																																
CD276	80381	MSKCC	GRCh37	15	73996790	73996790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	52	209	1	ENST00000318443.5:c.1346C>T	p.Ala449Val	p.A449V	ENST00000318443	NM_001024736.1	449	gCg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3830751	3830751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	28	359	0	ENST00000262367.5:c.1805G>A	p.Ser602Asn	p.S602N	ENST00000262367	NM_004380.2	602	aGc/aAc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868072	56868072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	57	330	1	ENST00000308159.5:c.1570C>T	p.Arg524Trp	p.R524W	ENST00000308159	NM_014669.4	524	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	258	634	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15950271	15950271	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	199	714	0	ENST00000268712.3:c.6673G>C	p.Asp2225His	p.D2225H	ENST00000268712	NM_006311.3	2225	Gat/Cat																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	163	495	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40441504	40441504	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	126	463	0	ENST00000345506.4:c.75C>G	p.His25Gln	p.H25Q	ENST00000345506	NM_003152.3	25	caC/caG																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244694	41244694	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	109	684	0	ENST00000357654.3:c.2854T>G	p.Phe952Val	p.F952V	ENST00000357654	NM_007294.3	952	Ttt/Gtt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245027	41245027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	105	724	1	ENST00000357654.3:c.2521C>T	p.Arg841Trp	p.R841W	ENST00000357654	NM_007294.3	841	Cgg/Tgg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63545678	63545678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	120	416	2	ENST00000307078.5:c.916G>A	p.Ala306Thr	p.A306T	ENST00000307078	NM_004655.3	306	Gcg/Acg																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78857261	78857261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	37	405	3	ENST00000306801.3:c.1627G>A	p.Val543Ile	p.V543I	ENST00000306801	NM_020761.2	543	Gtc/Atc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78867611	78867611	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	99	578	0	ENST00000306801.3:c.2347A>C	p.Thr783Pro	p.T783P	ENST00000306801	NM_020761.2	783	Acc/Ccc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226986	2226986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	107	363	0	ENST00000398665.3:c.4466C>T	p.Ala1489Val	p.A1489V	ENST00000398665	NM_032482.2	1489	gCc/gTc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5208010	5208010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	124	472	1	ENST00000357368.4:c.5701C>T	p.Arg1901Trp	p.R1901W	ENST00000357368	NM_002850.3	1901	Cgg/Tgg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138614	11138614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	215	511	0	ENST00000344626.4:c.3370C>T	p.Leu1124Phe	p.L1124F	ENST00000344626	NM_003072.3	1124	Ctc/Ttc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	59	350	0	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211850	36211850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	148	597	1	ENST00000222270.7:c.1601C>T	p.Ala534Val	p.A534V	ENST00000222270	NM_014727.1	534	gCc/gTc																																																																															
CIC	23152	MSKCC	GRCh37	19	42798428	42798428	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	126	560	1	ENST00000575354.2:c.4303del	p.Asp1435ThrfsTer19	p.D1435Tfs*19	ENST00000575354	NM_015125.3	1433	gaG/ga																																																																															
CIC	23152	MSKCC	GRCh37	19	42799131	42799131	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	157	454	1	ENST00000575354.2:c.4620delC	p.Thr1541LeufsTer79	p.T1541Lfs*79	ENST00000575354	NM_015125.3	1539	Ccc/cc																																																																															
RRAS	6237	MSKCC	GRCh37	19	50140100	50140100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	109	510	0	ENST00000246792.3:c.325G>A	p.Ala109Thr	p.A109T	ENST00000246792	NM_006270.3	109	Gcc/Acc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213243	39213243	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	152	714	2	ENST00000402219.2:c.3724del	p.Ser1242ValfsTer37	p.S1242Vfs*37	ENST00000402219	NM_005633.3	1242	Agt/gt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47657066	47657066	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	90	310	0	ENST00000233146.2:c.1262T>G	p.Leu421Arg	p.L421R	ENST00000233146	NM_000251.2	421	cTg/cGg																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62325821	62325821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	92	406	0	ENST00000508582.2:c.3161C>T	p.Ser1054Leu	p.S1054L	ENST00000508582		1054	tCg/tTg																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42842590	42842590	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	114	547	5	ENST00000398585.3:c.1267delG	p.Ala423ProfsTer12	p.A423Pfs*12	ENST00000398585	NM_001135099.1	423	Gcc/cc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47139542	47139542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	97	428	1	ENST00000409792.3:c.5045C>T	p.Ser1682Leu	p.S1682L	ENST00000409792	NM_014159.6	1682	tCa/tTa																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928867	49928867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	111	560	0	ENST00000296474.3:c.3499G>A	p.Gly1167Ser	p.G1167S	ENST00000296474	NM_002447.2	1167	Ggt/Agt																																																																															
MST1R	4486	MSKCC	GRCh37	3	49932759	49932759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	157	712	0	ENST00000296474.3:c.3112G>A	p.Ala1038Thr	p.A1038T	ENST00000296474	NM_002447.2	1038	Gca/Aca																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169985727	169985727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	127	546	0	ENST00000295797.4:c.389G>A	p.Arg130His	p.R130H	ENST00000295797	NM_002740.5	130	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178947803	178947803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	38	325	0	ENST00000263967.3:c.2678C>T	p.Ala893Val	p.A893V	ENST00000263967	NM_006218.2	893	gCc/gTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1260644	1260644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	153	501	1	ENST00000310581.5:c.2915G>A	p.Arg972His	p.R972H	ENST00000310581	NM_198253.2	972	cGc/cAc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31508827	31508827	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	171	554	0	ENST00000344624.3:c.1488C>G	p.Ser496Arg	p.S496R	ENST00000344624		496	agC/agG																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38981989	38981989	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	49	497	0	ENST00000357387.3:c.733C>T	p.Arg245Ter	p.R245*	ENST00000357387	NM_152756.3	245	Cga/Tga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56183208	56183208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	63	309	2	ENST00000399503.3:c.4118C>T	p.Ala1373Val	p.A1373V	ENST00000399503	NM_005921.1	1373	gCc/gTc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753013	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	86	301	0	ENST00000274289.3:c.1003_1004del	p.Leu335AlafsTer11	p.L335Afs*11	ENST00000274289	NM_006622.3	335	TTg/g																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67593301	67593301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	165	267	0	ENST00000274335.5:c.2047G>A	p.Glu683Lys	p.E683K	ENST00000274335		683	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	58	251	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166736	32166736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	330	605	0	ENST00000375023.3:c.4502G>A	p.Arg1501Gln	p.R1501Q	ENST00000375023	NM_004557.3	1501	cGg/cAg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117715470	117715470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	132	497	1	ENST00000368508.3:c.1019C>T	p.Ser340Phe	p.S340F	ENST00000368508	NM_002944.2	340	tCt/tTt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129085	152129085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	117	446	4	ENST00000206249.3:c.38C>T	p.Ala13Val	p.A13V	ENST00000206249	NM_000125.3	13	gCc/gTc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141572622	141572622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	102	478	0	ENST00000220592.5:c.448C>T	p.Arg150Trp	p.R150W	ENST00000220592	NM_012154.3	150	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971053	21971053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	85	237	0	ENST00000304494.5:c.305C>T	p.Ala102Val	p.A102V	ENST00000304494	NM_000077.4	102	gCg/gTg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399386	139399386	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201360886		P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	105	424	0	ENST00000277541.6:c.4757G>A	p.Arg1586His	p.R1586H	ENST00000277541	NM_017617.3	1586	cGc/cAc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139404305	139404305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	126	530	1	ENST00000277541.6:c.2849C>T	p.Ala950Val	p.A950V	ENST00000277541	NM_017617.3	950	gCc/gTc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39916463	39916463	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	129	320	0	ENST00000378444.4:c.4540C>T	p.Arg1514Ter	p.R1514*	ENST00000378444	NM_001123385.1	1514	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	120	465	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577507	7577507	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	201	715	0	ENST00000269305.4:c.774A>C	p.Glu258Asp	p.E258D	ENST00000269305	NM_001126112.2	258	gaA/gaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0025272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	244	648	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578441	7578441	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0025272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1269	190	725	1	ENST00000269305.4:c.489C>G	p.Tyr163Ter	p.Y163*	ENST00000269305	NM_001126112.2	163	taC/taG																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911934	32911934	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	268	580	0	ENST00000380152.3:c.3442C>T	p.Gln1148Ter	p.Q1148*	ENST00000380152		1148	Cag/Tag																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482869	67482869	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	275	438	0	ENST00000327367.4:c.1273T>G	p.Ser425Ala	p.S425A	ENST00000327367	NM_005902.3	425	Tct/Gct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	90	557	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971101	21971101	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	53	383	0	ENST00000361570.3:c.423C>A	p.Cys141Ter	p.C141*	ENST00000361570	NM_058195.3	141	tgC/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7579349	7579349	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	100	548	0	ENST00000269305.4:c.338del	p.Phe113SerfsTer10	p.F113Sfs*10	ENST00000269305	NM_001126112.2	113	tTc/tc																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250661	26250661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	40	498	0	ENST00000446824.2:c.173C>T	p.Ser58Leu	p.S58L	ENST00000446824	NM_021018.2	58	tCg/tTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041046	47041046	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0025085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	48	265	0	ENST00000329236.7:c.1341+1G>A		p.X447_splice	ENST00000329236	NM_001204466.1	447																																																																																
SPOP	8405	MSKCC	GRCh37	17	47696449	47696449	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	270	454	0	ENST00000347630.2:c.374T>G	p.Phe125Cys	p.F125C	ENST00000347630	NM_001007230.1	125	tTt/tGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	225	746	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593519	48593519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	180	315	0	ENST00000342988.3:c.1270G>A	p.Asp424Asn	p.D424N	ENST00000342988	NM_005359.5	424	Gat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112175213	112175213	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0025088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	256	249	0	ENST00000257430.4:c.3922A>T	p.Lys1308Ter	p.K1308*	ENST00000257430	NM_000038.5	1308	Aaa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604774	48604782	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCT	CCTCCAGCT	-			P-0025088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	278	446	1	ENST00000342988.3:c.1599_1607del	p.Gln534_Leu536del	p.Q534_L536del	ENST00000342988	NM_005359.5	532	gcCCTCCAGCTc/gcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	79	516	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	116	420	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	72	541	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589306	28589306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	72	372	0	ENST00000241453.7:c.2741C>A	p.Ala914Asp	p.A914D	ENST00000241453	NM_004119.2	914	gCt/gAt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465609	99465609	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	84	371	0	ENST00000268035.6:c.2434A>G	p.Lys812Glu	p.K812E	ENST00000268035	NM_000875.3	812	Aag/Gag																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17384741	17384741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	166	548	1	ENST00000359435.4:c.373C>A	p.Gln125Lys	p.Q125K	ENST00000359435	NM_001033549.1	125	Cag/Aag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219029	36219029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	144	488	1	ENST00000222270.7:c.4528G>A	p.Ala1510Thr	p.A1510T	ENST00000222270	NM_014727.1	1510	Gcc/Acc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965872	25965872	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	125	446	0	ENST00000435504.4:c.3334G>T	p.Gly1112Cys	p.G1112C	ENST00000435504		1112	Ggc/Tgc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972977	25972977	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	66	275	0	ENST00000435504.4:c.1448C>A	p.Pro483Gln	p.P483Q	ENST00000435504		483	cCa/cAa																																																																															
ERG	2078	MSKCC	GRCh37	21	39755829	39755829	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	31	184	0	ENST00000288319.7:c.936G>T	p.Gln312His	p.Q312H	ENST00000288319	NM_182918.3	312	caG/caT																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38982069	38982069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	40	487	0	ENST00000357387.3:c.653G>T	p.Cys218Phe	p.C218F	ENST00000357387	NM_152756.3	218	tGc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112175969	112175969	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	35	234	0	ENST00000257430.4:c.4678G>T	p.Glu1560Ter	p.E1560*	ENST00000257430	NM_000038.5	1560	Gaa/Taa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468167	50468167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	145	332	0	ENST00000331340.3:c.1402C>T	p.Arg468Trp	p.R468W	ENST00000331340	NM_006060.4	468	Cgg/Tgg																																																																															
XIAP	331	MSKCC	GRCh37	X	123020205	123020205	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	90	298	0	ENST00000355640.3:c.693G>T	p.Leu231Phe	p.L231F	ENST00000355640		231	ttG/ttT																																																																															
NUP93	9688	MSKCC	GRCh37	16	56878466	56878466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	95	566	1	ENST00000308159.5:c.2405G>A	p.Arg802Gln	p.R802Q	ENST00000308159	NM_014669.4	802	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	26	820	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578502	7578502	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	26	1127	0	ENST00000269305.4:c.428T>G	p.Val143Gly	p.V143G	ENST00000269305	NM_001126112.2	143	gTg/gGg																																																																															
RAC1	5879	MSKCC	GRCh37	7	6431642	6431642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	21	613	0	ENST00000356142.4:c.195C>A	p.Asp65Glu	p.D65E	ENST00000356142	NM_018890.3	65	gaC/gaA																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231462	46231462	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	311	339	0	ENST00000334344.6:c.1306delA	p.Ile436LeufsTer4	p.I436Lfs*4	ENST00000334344	NM_152641.2	434	acA/ac																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981116	201981117	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	278	657	0	ENST00000359651.3:c.197dup	p.Trp67LeufsTer25	p.W67Lfs*25	ENST00000359651		65	-/T																																																																															
SESN3	143686	MSKCC	GRCh37	11	94918430	94918430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	81	472	0	ENST00000536441.1:c.752G>A	p.Ser251Asn	p.S251N	ENST00000536441	NM_144665.3	251	aGc/aAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378559	25378559	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	458	506	0	ENST00000256078.4:c.439A>G	p.Lys147Glu	p.K147E	ENST00000256078	NM_033360.2	147	Aag/Gag																																																																															
FLT1	2321	MSKCC	GRCh37	13	29002006	29002006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	339	514	0	ENST00000282397.4:c.1159G>A	p.Gly387Ser	p.G387S	ENST00000282397	NM_002019.4	387	Ggc/Agc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532474	63532474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	369	665	1	ENST00000307078.5:c.2105G>A	p.Arg702His	p.R702H	ENST00000307078	NM_004655.3	702	cGc/cAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522726	67522726	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	106	221	0	ENST00000274335.5:c.223G>T	p.Glu75Ter	p.E75*	ENST00000274335		75	Gaa/Taa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591108	67591134	+	inframe_deletion	In_Frame_Del	DEL	ACCAGACCTTATCCAGCTGAGAAAGAC	ACCAGACCTTATCCAGCTGAGAAAGAC	-			P-0025145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	96	305	0	ENST00000274335.5:c.1701_1727del	p.Pro568_Thr576del	p.P568_T576del	ENST00000274335		567	aaACCAGACCTTATCCAGCTGAGAAAGACg/aag																																																																															
APC	324	MSKCC	GRCh37	5	112175236	112175237	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	C			P-0025145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	234	235	0	ENST00000257430.4:c.3945_3946delinsC	p.Ala1316LeufsTer5	p.A1316Lfs*5	ENST00000257430	NM_000038.5	1315	tcAGct/tcCct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	261	953	0	ENST00000269305.4:c.434T>C	p.Leu145Pro	p.L145P	ENST00000269305	NM_001126112.2	145	cTg/cCg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117878877	117878877	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	94	536	0	ENST00000297338.2:c.92A>G	p.His31Arg	p.H31R	ENST00000297338	NM_006265.2	31	cAt/cGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242474	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGA	GAATTAAGA	-			P-0025155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	85	586	0	ENST00000275493.2:c.2239_2247delTTAAGAGAA	p.Leu747_Glu749del	p.L747_E749del	ENST00000275493	NM_005228.3	746	GAATTAAGA/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	184	624	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0025161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	94	576	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	28	624	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0025161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	11	229	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0025161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	15	428	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175536	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	135	257	0	ENST00000257430.4:c.4245del	p.Ser1415ArgfsTer4	p.S1415Rfs*4	ENST00000257430	NM_000038.5	1415	agT/ag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	138	423	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16056703	16056704	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	100	459	0	ENST00000268712.3:c.738dupA	p.Ala247SerfsTer6	p.A247Sfs*6	ENST00000268712	NM_006311.3	246	-/A																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004982	16004982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	73	564	0	ENST00000268712.3:c.2272G>A	p.Glu758Lys	p.E758K	ENST00000268712	NM_006311.3	758	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112163688	112163688	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	129	345	0	ENST00000257430.4:c.1611del	p.Ser537ArgfsTer12	p.S537Rfs*12	ENST00000257430	NM_000038.5	537	agT/ag																																																																															
ATRX	546	MSKCC	GRCh37	X	76938121	76938121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	306	332	0	ENST00000373344.5:c.2627C>G	p.Ser876Cys	p.S876C	ENST00000373344	NM_000489.3	876	tCt/tGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	222	442	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919758	50919758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1220	272	351	0	ENST00000440232.2:c.2926G>A	p.Glu976Lys	p.E976K	ENST00000440232	NM_002691.3	976	Gag/Aag																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919689	50919689	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1451	323	432	0	ENST00000440232.2:c.2857G>C	p.Asp953His	p.D953H	ENST00000440232	NM_002691.3	953	Gac/Cac																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919707	50919707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1419	302	399	1	ENST00000440232.2:c.2875G>A	p.Glu959Lys	p.E959K	ENST00000440232	NM_002691.3	959	Gag/Aag																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919872	50919872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	225	319	0	ENST00000440232.2:c.2959G>A	p.Asp987Asn	p.D987N	ENST00000440232	NM_002691.3	987	Gac/Aac																																																																															
RET	5979	MSKCC	GRCh37	10	43610162	43610163	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AG			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	66	581	4	ENST00000355710.3:c.2114_2115delinsAG	p.Ser705Ter	p.S705*	ENST00000355710	NM_020975.4	705	tCC/tAG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	223	641	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444755	49444755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	243	709	0	ENST00000301067.7:c.2711G>A	p.Gly904Glu	p.G904E	ENST00000301067	NM_003482.3	904	gGg/gAg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28880827	28880827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	181	588	1	ENST00000282397.4:c.3803C>T	p.Ser1268Leu	p.S1268L	ENST00000282397	NM_002019.4	1268	tCg/tTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640904	3640904	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	37	716	0	ENST00000294008.3:c.2735del	p.Gly912GlufsTer89	p.G912Efs*89	ENST00000294008	NM_032444.2	912	gGa/ga																																																																															
CDH1	999	MSKCC	GRCh37	16	68835650	68835650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	145	537	0	ENST00000261769.5:c.241G>A	p.Gly81Ser	p.G81S	ENST00000261769	NM_004360.3	81	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	250	607	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17952239	17952239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	76	545	0	ENST00000458235.1:c.1101G>T	p.Arg367Ser	p.R367S	ENST00000458235	NM_000215.3	367	agG/agT																																																																															
JAK3	3718	MSKCC	GRCh37	19	17953399	17953399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	91	565	0	ENST00000458235.1:c.587C>A	p.Pro196Gln	p.P196Q	ENST00000458235	NM_000215.3	196	cCa/cAa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464512	25464512	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	106	595	0	ENST00000264709.3:c.2001G>T	p.Glu667Asp	p.E667D	ENST00000264709	NM_175629.2	667	gaG/gaT																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098815	178098815	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	127	610	0	ENST00000397062.3:c.230A>T	p.Asp77Val	p.D77V	ENST00000397062	NM_006164.4	77	gAt/gTt																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794118	242794118	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	90	582	1	ENST00000334409.5:c.610C>A	p.Arg204Ser	p.R204S	ENST00000334409	NM_005018.2	204	Cgc/Agc																																																																															
MITF	4286	MSKCC	GRCh37	3	69998286	69998286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	108	461	2	ENST00000352241.4:c.847G>T	p.Ala283Ser	p.A283S	ENST00000352241	NM_198159.2	283	Gcc/Tcc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134514485	134514485	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	78	480	0	ENST00000398015.3:c.12T>A	p.Asp4Glu	p.D4E	ENST00000398015	NM_004441.4	4	gaT/gaA																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55140703	55140703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	91	486	0	ENST00000257290.5:c.1564C>T	p.Arg522Cys	p.R522C	ENST00000257290	NM_006206.4	522	Cgt/Tgt																																																																															
SDHA	6389	MSKCC	GRCh37	5	225654	225654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	92	537	0	ENST00000264932.6:c.433C>A	p.Gln145Lys	p.Q145K	ENST00000264932	NM_004168.2	145	Cag/Aag																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149441149	149441149	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	64	541	0	ENST00000286301.3:c.1763T>A	p.Leu588His	p.L588H	ENST00000286301	NM_005211.3	588	cTc/cAc																																																																															
E2F3	1871	MSKCC	GRCh37	6	20481435	20481435	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	38	276	0	ENST00000346618.3:c.506-2A>T		p.X169_splice	ENST00000346618	NM_001949.4	169																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32168916	32168916	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	71	631	0	ENST00000375023.3:c.4117G>T	p.Glu1373Ter	p.E1373*	ENST00000375023	NM_004557.3	1373	Gag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012244	152012244	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	215	479	0	ENST00000262189.6:c.569G>C	p.Arg190Pro	p.R190P	ENST00000262189	NM_170606.2	190	cGa/cCa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8523526	8523526	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	125	343	0	ENST00000356435.5:c.680-2A>T		p.X227_splice	ENST00000356435		227																																																																																
NTRK2	4915	MSKCC	GRCh37	9	87570280	87570280	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	74	447	0	ENST00000277120.3:c.2020C>G	p.Gln674Glu	p.Q674E	ENST00000277120		674	Cag/Gag																																																																															
ATRX	546	MSKCC	GRCh37	X	76849320	76849320	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	91	436	1	ENST00000373344.5:c.5957-1G>T		p.X1986_splice	ENST00000373344	NM_000489.3	1986																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	97	278	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	203	472	3	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	119	285	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591925	48591925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	101	386	3	ENST00000342988.3:c.1088G>T	p.Cys363Phe	p.C363F	ENST00000342988	NM_005359.5	363	tGt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	138	439	0	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480459	89480459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	124	257	3	ENST00000336596.2:c.2296G>A	p.Gly766Arg	p.G766R	ENST00000336596	NM_005233.5	766	Gga/Aga																																																																															
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	111	249	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031883	26031884	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	105	161	2	ENST00000244661.2:c.405_406delAG	p.Arg135SerfsTer12	p.R135Sfs*12	ENST00000244661	NM_003537.3	135	agAGcg/agcg																																																																															
KDR	3791	MSKCC	GRCh37	4	55964358	55964358	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	172	407	0	ENST00000263923.4:c.2455C>T	p.Arg819Ter	p.R819*	ENST00000263923	NM_002253.2	819	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48603007	48603007	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	100	264	0	ENST00000342988.3:c.1309-1G>T		p.X437_splice	ENST00000342988	NM_005359.5	437																																																																																
MTOR	2475	MSKCC	GRCh37	1	11188153	11188153	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	190	408	0	ENST00000361445.4:c.5941A>G	p.Lys1981Glu	p.K1981E	ENST00000361445	NM_004958.3	1981	Aag/Gag																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870872	12870873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	84	159	0	ENST00000228872.4:c.101dup	p.Val36GlyfsTer89	p.V36Gfs*89	ENST00000228872	NM_004064.3	33	-/G																																																																															
SETD2	29072	MSKCC	GRCh37	3	47059226	47059226	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	37	290	0	ENST00000409792.3:c.7435T>C	p.Ser2479Pro	p.S2479P	ENST00000409792	NM_014159.6	2479	Tcc/Ccc																																																																															
BRAF	673	MSKCC	GRCh37	7	140481391	140481392	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTA			P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	96	354	0	ENST00000288602.6:c.1414_1416dup	p.Tyr472dup	p.Y472dup	ENST00000288602	NM_004333.4	472	-/TAC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0025194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	286	524	5	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	171	335	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29585361	29585361	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0025194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	279	445	0	ENST00000358273.4:c.4174-1G>A		p.X1392_splice	ENST00000358273	NM_001042492.2	1392																																																																																
FAT1	2195	MSKCC	GRCh37	4	187540958	187540958	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs189912205		P-0025194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	122	319	0	ENST00000441802.2:c.6782C>T	p.Thr2261Met	p.T2261M	ENST00000441802	NM_005245.3	2261	aCg/aTg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	404903	404903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	213	584	2	ENST00000399788.2:c.4291G>A	p.Glu1431Lys	p.E1431K	ENST00000399788	NM_001042603.1	1431	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	196	634	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0024828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	55	650	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243512	41243512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	116	731	1	ENST00000357654.3:c.4036G>A	p.Glu1346Lys	p.E1346K	ENST00000357654	NM_007294.3	1346	Gaa/Aaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971102	21971102	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	55	395	0	ENST00000304494.5:c.256del	p.Ala86ProfsTer60	p.A86Pfs*60	ENST00000304494	NM_000077.4	86	Gcc/cc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101908852	101908852	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	73	600	0	ENST00000374994.4:c.1217del	p.Leu406Ter	p.L406*	ENST00000374994	NM_004612.2	406	Tta/ta																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	46	494	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	544	556	9	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	62	419	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	94	389	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	150	425	2	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	193	661	20	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	26	347	3	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22221709	22221714	+	inframe_deletion	In_Frame_Del	DEL	CCGCCG	CCGCCG	-			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	53	161	3	ENST00000215832.6:c.17_22del	p.Ala6_Ala7del	p.A6_A7del	ENST00000215832	NM_002745.4	6	gCGGCGGgc/ggc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	90	436	2	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	96	354	5	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913253	39913253	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	262	287	0	ENST00000378444.4:c.4862delC	p.Pro1621GlnfsTer53	p.P1621Qfs*53	ENST00000378444	NM_001123385.1	1621	cCa/ca																																																																															
PAX5	5079	MSKCC	GRCh37	9	36882049	36882050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	240	732	5	ENST00000358127.4:c.963dupC	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	-/C																																																																															
CIC	23152	MSKCC	GRCh37	19	42794441	42794441	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1758	411	894	0	ENST00000575354.2:c.1526delC	p.Pro509HisfsTer14	p.P509Hfs*14	ENST00000575354	NM_015125.3	507	cgC/cg																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	61	506	8	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
TET1	80312	MSKCC	GRCh37	10	70332471	70332471	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	124	585	0	ENST00000373644.4:c.380delA	p.Lys127ArgfsTer8	p.K127Rfs*8	ENST00000373644	NM_030625.2	126	Aaa/aa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163554	32163554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1392	310	543	1	ENST00000375023.3:c.5672del	p.Gly1891AlafsTer13	p.G1891Afs*13	ENST00000375023	NM_004557.3	1891	gGc/gc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2983877	2983877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	188	740	0	ENST00000396946.4:c.653C>T	p.Ala218Val	p.A218V	ENST00000396946	NM_032415.4	218	gCg/gTg																																																																															
JUN	3725	MSKCC	GRCh37	1	59248394	59248394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	84	395	0	ENST00000371222.2:c.349G>A	p.Ala117Thr	p.A117T	ENST00000371222	NM_002228.3	117	Gcc/Acc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	23	695	4	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	85	697	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262102	10262102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1210	89	691	1	ENST00000340748.4:c.2189G>A	p.Arg730His	p.R730H	ENST00000340748		730	cGc/cAc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047659	180047659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	207	651	3	ENST00000261937.6:c.2356G>A	p.Ala786Thr	p.A786T	ENST00000261937	NM_182925.4	786	Gct/Act																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421039	49421039	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs398123721		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	82	483	3	ENST00000301067.7:c.14710C>T	p.Arg4904Ter	p.R4904*	ENST00000301067	NM_003482.3	4904	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435199	49435199	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	74	530	1	ENST00000301067.7:c.6354delC	p.Ala2119LeufsTer25	p.A2119Lfs*25	ENST00000301067	NM_003482.3	2118	ccC/cc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291084	10291084	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	261	644	1	ENST00000340748.4:c.387del	p.Lys130AsnfsTer129	p.K130Nfs*129	ENST00000340748		129	ccC/cc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21624390	21624390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	61	565	1	ENST00000421138.2:c.1639G>A	p.Ala547Thr	p.A547T	ENST00000421138		547	Gca/Aca																																																																															
POLE	5426	MSKCC	GRCh37	12	133209267	133209267	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs5745021		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	243	609	1	ENST00000320574.5:c.6119C>T	p.Ala2040Val	p.A2040V	ENST00000320574	NM_006231.2	2040	gCg/gTg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67459188	67459188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	216	511	0	ENST00000327367.4:c.604G>A	p.Ala202Thr	p.A202T	ENST00000327367	NM_005902.3	202	Gca/Aca																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581192	48581193	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	98	404	0	ENST00000342988.3:c.497_498del	p.Phe166Ter	p.F166*	ENST00000342988	NM_005359.5	166	TTt/t																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306664	41306664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	156	649	0	ENST00000373198.4:c.995G>A	p.Gly332Asp	p.G332D	ENST00000373198	NM_133170.3	332	gGc/gAc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056175	26056175	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61742489		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	288	448	0	ENST00000343677.2:c.482C>T	p.Pro161Leu	p.P161L	ENST00000343677	NM_005319.3	161	cCg/cTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188975	11188975	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	60	666	0	ENST00000361445.4:c.5748G>A	p.Trp1916Ter	p.W1916*	ENST00000361445	NM_004958.3	1916	tgG/tgA																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255619	16255619	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	150	469	0	ENST00000375759.3:c.2884A>G	p.Lys962Glu	p.K962E	ENST00000375759	NM_015001.2	962	Aag/Gag																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115261278	115261278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	219	559	0	ENST00000438362.2:c.2443C>T	p.Arg815Cys	p.R815C	ENST00000438362	NM_001242891.1	815	Cgc/Tgc																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551942	150551942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1341	277	467	0	ENST00000369026.2:c.65G>T	p.Gly22Val	p.G22V	ENST00000369026	NM_021960.4	22	gGg/gTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18800808	18800808	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	22	352	0	ENST00000266497.5:c.4186-2A>G		p.X1396_splice	ENST00000266497		1396																																																																																
GLI1	2735	MSKCC	GRCh37	12	57859570	57859570	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	65	467	0	ENST00000228682.2:c.625-1G>A		p.X209_splice	ENST00000228682	NM_005269.2	209																																																																																
SOCS1	8651	MSKCC	GRCh37	16	11349139	11349139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	211	357	1	ENST00000332029.2:c.197G>A	p.Arg66His	p.R66H	ENST00000332029	NM_003745.1	66	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830964	72830964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	112	477	2	ENST00000268489.5:c.5617C>T	p.His1873Tyr	p.H1873Y	ENST00000268489	NM_006885.3	1873	Cac/Tac																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7983223	7983225	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	292	558	0	ENST00000319144.4:c.789_791del	p.Phe264del	p.F264del	ENST00000319144	NM_001139.2	263	ttCTTt/ttt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99155436	99155436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	113	355	0	ENST00000074304.5:c.662T>C	p.Leu221Pro	p.L221P	ENST00000074304	NM_001134224.1	221	cTg/cCg																																																																															
EP300	2033	MSKCC	GRCh37	22	41523513	41523513	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	169	459	0	ENST00000263253.7:c.929T>C	p.Val310Ala	p.V310A	ENST00000263253	NM_001429.3	310	gTc/gCc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026124	71026127	+	frameshift_variant	Frame_Shift_Del	DEL	CAAA	CAAA	-			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	150	444	0	ENST00000318789.4:c.1495_1498del	p.Phe499LeufsTer27	p.F499Lfs*27	ENST00000318789	NM_032682.5	499	TTTGct/ct																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138461564	138461564	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202220571		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	66	514	1	ENST00000289153.2:c.457C>T	p.Arg153Cys	p.R153C	ENST00000289153	NM_006219.2	153	Cgc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187516975	187516975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	59	378	0	ENST00000441802.2:c.13006G>A	p.Val4336Met	p.V4336M	ENST00000441802	NM_005245.3	4336	Gtg/Atg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323214	31323214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1094	254	503	0	ENST00000412585.2:c.775C>T	p.Pro259Ser	p.P259S	ENST00000412585	NM_005514.6	259	Cca/Tca																																																																															
HGF	3082	MSKCC	GRCh37	7	81350151	81350151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	17	378	0	ENST00000222390.5:c.1181G>T	p.Gly394Val	p.G394V	ENST00000222390	NM_000601.4	394	gGg/gTg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929028	44929028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	28	218	0	ENST00000377967.4:c.2128C>T	p.Gln710Ter	p.Q710*	ENST00000377967	NM_021140.2	710	Caa/Taa																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412123	63412124	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	257	455	0	ENST00000330258.3:c.1043dup	p.Gln349ProfsTer29	p.Q349Pfs*29	ENST00000330258	NM_152424.3	348	ggc/ggGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0025062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	64	513	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217662	7217662	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	69	428	0	ENST00000380728.2:c.265C>T	p.Gln89Ter	p.Q89*	ENST00000380728		89	Cag/Tag																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206759	36206771	+	frameshift_variant	Frame_Shift_Del	DEL	GGCACGAGGGTTG	GGCACGAGGGTTG	-			P-0025062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	79	611	0	ENST00000300305.3:c.741_753del	p.Asn248ProfsTer2	p.N248Pfs*2	ENST00000300305		247	ccCAACCCTCGTGCC/cc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0025127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	1516	576	2	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576889	7576890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	310	752	2	ENST00000269305.4:c.956dup	p.Lys320GlufsTer17	p.K320Efs*17	ENST00000269305	NM_001126112.2	319	aag/aaAg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206647713	206647713	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	328	513	0	ENST00000367120.3:c.127A>G	p.Thr43Ala	p.T43A	ENST00000367120	NM_014002.3	43	Acc/Gcc																																																																															
CDK4	1019	MSKCC	GRCh37	12	58142981	58142981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	52	749	0	ENST00000257904.6:c.803G>A	p.Gly268Glu	p.G268E	ENST00000257904	NM_000075.3	268	gGa/gAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822544	72822544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	47	509	0	ENST00000268489.5:c.9631C>T	p.Pro3211Ser	p.P3211S	ENST00000268489	NM_006885.3	3211	Ccc/Tcc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15943793	15943793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	28	516	0	ENST00000268712.3:c.6695G>A	p.Gly2232Glu	p.G2232E	ENST00000268712	NM_006311.3	2232	gGa/gAa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245963	41245963	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	76	920	0	ENST00000357654.3:c.1585C>G	p.Pro529Ala	p.P529A	ENST00000357654	NM_007294.3	529	Cct/Gct																																																																															
INSR	3643	MSKCC	GRCh37	19	7170755	7170755	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	61	697	0	ENST00000302850.5:c.1276T>G	p.Ser426Ala	p.S426A	ENST00000302850	NM_000208.2	426	Tcc/Gcc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178097128	178097128	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	21	305	0	ENST00000397062.3:c.586G>C	p.Glu196Gln	p.E196Q	ENST00000397062	NM_006164.4	196	Gag/Cag																																																																															
ERG	2078	MSKCC	GRCh37	21	39817505	39817505	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	50	580	0	ENST00000288319.7:c.58G>C	p.Glu20Gln	p.E20Q	ENST00000288319	NM_182918.3	20	Gag/Cag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39911454	39911454	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	50	688	0	ENST00000378444.4:c.5176C>G	p.Leu1726Val	p.L1726V	ENST00000378444	NM_001123385.1	1726	Ctg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753660142		P-0025132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	369	804	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																															
APC	324	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	21	298	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030585	47030585	+	intron_variant	Intron	SNP	T	T	G			P-0025132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	25	357	1	ENST00000329236.7:c.201+1688T>G		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
MAP2K4	6416	MSKCC	GRCh37	17	11984811	11984811	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	38	494	0	ENST00000353533.5:c.358del	p.Val120SerfsTer8	p.V120Sfs*8	ENST00000353533	NM_003010.3	119	atG/at																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42840369	42840369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	45	594	1	ENST00000398585.3:c.1379C>T	p.Ala460Val	p.A460V	ENST00000398585	NM_001135099.1	460	gCc/gTc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931898	68931898	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	23	651	0	ENST00000288368.4:c.328C>A	p.Leu110Ile	p.L110I	ENST00000288368	NM_024870.2	110	Ctt/Att																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711873	89711873	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0025165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	83	498	0	ENST00000371953.3:c.493-2A>G		p.X165_splice	ENST00000371953	NM_000314.4	165																																																																																
TP53	7157	MSKCC	GRCh37	17	7579358	7579359	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	110	616	0	ENST00000269305.4:c.328dup	p.Arg110ProfsTer39	p.R110Pfs*39	ENST00000269305	NM_001126112.2	110	cgt/cCgt																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113179	209113179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	29	466	0	ENST00000345146.2:c.328G>A	p.Glu110Lys	p.E110K	ENST00000345146	NM_005896.2	110	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	329	671	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683697	162683697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	65	601	0	ENST00000366898.1:c.272C>T	p.Ala91Val	p.A91V	ENST00000366898	NM_004562.2	91	gCg/gTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248450	212248450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	53	380	0	ENST00000342788.4:c.3817C>T	p.Arg1273Trp	p.R1273W	ENST00000342788	NM_005235.2	1273	Cgg/Tgg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982409	201982409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	143	780	0	ENST00000359651.3:c.788G>A	p.Gly263Asp	p.G263D	ENST00000359651		263	gGc/gAc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711314	114711314	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	152	454	0	ENST00000543371.1:c.329A>T	p.Asp110Val	p.D110V	ENST00000543371	NM_001198531.1	110	gAc/gTc																																																																															
POLE	5426	MSKCC	GRCh37	12	133215712	133215712	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A	rs185498408		P-0025169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	136	369	0	ENST00000320574.5:c.5551C>T	p.Gln1851Ter	p.Q1851*	ENST00000320574	NM_006231.2	1851	Cag/Tag																																																																															
FLT1	2321	MSKCC	GRCh37	13	28913337	28913337	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1257	71	770	0	ENST00000282397.4:c.2456A>T	p.Lys819Met	p.K819M	ENST00000282397	NM_002019.4	819	aAg/aTg																																																																															
TOP1	7150	MSKCC	GRCh37	20	39728803	39728803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	54	454	1	ENST00000361337.2:c.1083C>A	p.Phe361Leu	p.F361L	ENST00000361337	NM_003286.2	361	ttC/ttA																																																																															
APC	324	MSKCC	GRCh37	5	112175924	112175924	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	38	250	0	ENST00000257430.4:c.4633T>C	p.Ser1545Pro	p.S1545P	ENST00000257430	NM_000038.5	1545	Tca/Cca																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38279363	38279363	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	104	835	1	ENST00000425967.3:c.1126A>G	p.Asn376Asp	p.N376D	ENST00000425967	NM_001174067.1	376	Aac/Gac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0025175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	642	682	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922875	39922875	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	248	343	0	ENST00000378444.4:c.3833G>C	p.Ser1278Thr	p.S1278T	ENST00000378444	NM_001123385.1	1278	aGt/aCt																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72058596	72058596	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	327	632	0	ENST00000357731.5:c.844C>G	p.Leu282Val	p.L282V	ENST00000357731	NM_173808.2	282	Ctc/Gtc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195910	102195910	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	142	441	0	ENST00000263464.3:c.670G>C	p.Glu224Gln	p.E224Q	ENST00000263464	NM_001165.4	224	Gaa/Caa																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195999	102195999	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	151	412	0	ENST00000263464.3:c.759G>C	p.Gln253His	p.Q253H	ENST00000263464	NM_001165.4	253	caG/caC																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986971	36986971	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	611	392	0	ENST00000354822.5:c.718C>T	p.Gln240Ter	p.Q240*	ENST00000354822	NM_001079668.2	240	Cag/Tag																																																																															
AXL	558	MSKCC	GRCh37	19	41748800	41748800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	317	777	0	ENST00000301178.4:c.1325C>T	p.Ser442Leu	p.S442L	ENST00000301178	NM_021913.4	442	tCa/tTa																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185198273	185198273	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	514	545	0	ENST00000265026.3:c.2755C>G	p.Gln919Glu	p.Q919E	ENST00000265026	NM_004721.4	919	Cag/Gag																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120745	94120745	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	344	604	0	ENST00000369303.4:c.306G>C	p.Leu102Phe	p.L102F	ENST00000369303	NM_004440.3	102	ttG/ttC																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026633	6026633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	653	1196	2	ENST00000265849.7:c.1763C>T	p.Ser588Phe	p.S588F	ENST00000265849	NM_000535.5	588	tCt/tTt																																																																															
EZH2	2146	MSKCC	GRCh37	7	148507497	148507497	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	318	516	1	ENST00000320356.2:c.1957C>T	p.Gln653Ter	p.Q653*	ENST00000320356	NM_004456.4	653	Caa/Taa																																																																															
EZH2	2146	MSKCC	GRCh37	7	148507506	148507506	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0025175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	273	472	0	ENST00000320356.2:c.1948A>T	p.Ile650Phe	p.I650F	ENST00000320356	NM_004456.4	650	Att/Ttt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260743	16260743	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	44	367	0	ENST00000375759.3:c.8008G>C	p.Gly2670Arg	p.G2670R	ENST00000375759	NM_015001.2	2670	Ggc/Cgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577544	+	inframe_deletion	In_Frame_Del	DEL	GGTTCA	GGTTCA	-			P-0025177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	237	454	0	ENST00000269305.4:c.737_742del	p.Met246_Asn247del	p.M246_N247del	ENST00000269305	NM_001126112.2	246	aTGAACCgg/agg																																																																															
LYN	4067	MSKCC	GRCh37	8	56879250	56879407	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCCGCCTTCTTTTTTCTTCCTAGGTTACTATAACAACAGTACCAAGGTGGCTGTGAAAACCCTGAAGCCAGGAACTATGTCTGTGCAAGCCTTCCTGGAAGAAGCCAACCTCATGAAGACCCTGCAGCATGACAAGCTCGTGAGGCTCTACGCTGTG	GCCCGCCTTCTTTTTTCTTCCTAGGTTACTATAACAACAGTACCAAGGTGGCTGTGAAAACCCTGAAGCCAGGAACTATGTCTGTGCAAGCCTTCCTGGAAGAAGCCAACCTCATGAAGACCCTGCAGCATGACAAGCTCGTGAGGCTCTACGCTGTG	-			P-0025177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	77	344	0	ENST00000519728.1:c.791-23_925del		p.X264_splice	ENST00000519728	NM_002350.3	264																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010785-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	1387	672	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587782289		P-0010785-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			146	326	630	0	ENST00000269305.4:c.706T>C	p.Tyr236His	p.Y236H	ENST00000269305	NM_001126112.2	236	Tac/Cac																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156837972	156837972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010785-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			584	395	764	1	ENST00000524377.1:c.505G>A	p.Gly169Arg	p.G169R	ENST00000524377	NM_002529.3	169	Gga/Aga																																																																															
ROS1	6098	MSKCC	GRCh37	6	117663682	117663682	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010785-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			39	184	477	0	ENST00000368508.3:c.4550T>C	p.Ile1517Thr	p.I1517T	ENST00000368508	NM_002944.2	1517	aTt/aCt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971117	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0010785-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			130	199	410	0	ENST00000304494.5:c.240_241dup	p.Pro81HisfsTer66	p.P81Hfs*66	ENST00000304494	NM_000077.4	81	ccc/cACcc																																																																															
CBL	867	MSKCC	GRCh37	11	119149250	119149250	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs200341293		P-0024307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	9	463	0	ENST00000264033.4:c.1258C>T	p.Arg420Ter	p.R420*	ENST00000264033	NM_005188.3	420	Cga/Tga																																																																															
STK11	6794	MSKCC	GRCh37	19	1206927	1206927	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	34	365	0	ENST00000326873.7:c.15C>A	p.Asp5Glu	p.D5E	ENST00000326873	NM_000455.4	5	gaC/gaA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024421-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			520	32	786	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610211	10610211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024421-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			828	79	727	0	ENST00000171111.5:c.499G>T	p.Val167Phe	p.V167F	ENST00000171111	NM_203500.1	167	Gtt/Ttt																																																																															
CBL	867	MSKCC	GRCh37	11	119170384	119170384	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024421-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			505	51	428	3	ENST00000264033.4:c.2614C>T	p.Gln872Ter	p.Q872*	ENST00000264033	NM_005188.3	872	Cag/Tag																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662760	227662760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024421-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			907	73	794	0	ENST00000305123.5:c.695G>T	p.Gly232Val	p.G232V	ENST00000305123	NM_005544.2	232	gGg/gTg																																																																															
BCL6	604	MSKCC	GRCh37	3	187447202	187447202	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024421-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			740	67	697	0	ENST00000232014.4:c.991C>G	p.Pro331Ala	p.P331A	ENST00000232014	NM_001130845.1	331	Cca/Gca																																																																															
TERT	7015	MSKCC	GRCh37	5	1294750	1294750	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024421-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			631	50	622	0	ENST00000310581.5:c.251T>A	p.Val84Glu	p.V84E	ENST00000310581	NM_198253.2	84	gTg/gAg																																																																															
ARAF	369	MSKCC	GRCh37	X	47428192	47428192	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024421-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			855	81	696	1	ENST00000377045.4:c.1152G>T	p.Trp384Cys	p.W384C	ENST00000377045	NM_001654.4	384	tgG/tgT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121193	11121194	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	A			P-0024421-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			730	68	649	2	ENST00000344626.4:c.2260_2261delinsA	p.Leu754ThrfsTer20	p.L754Tfs*20	ENST00000344626	NM_003072.3	754	CTc/Ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0024776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	69	671	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444975	49444975	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	26	554	0	ENST00000301067.7:c.2491T>A	p.Ser831Thr	p.S831T	ENST00000301067	NM_003482.3	831	Tca/Aca																																																																															
SDHA	6389	MSKCC	GRCh37	5	236601	236602	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCC			P-0024776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	17	237	0	ENST00000264932.6:c.1321_1324dup	p.Ala442GlyfsTer40	p.A442Gfs*40	ENST00000264932	NM_004168.2	440	gag/gaGGCCg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672321	30672321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	57	709	0	ENST00000376406.3:c.4639G>A	p.Val1547Ile	p.V1547I	ENST00000376406	NM_014641.2	1547	Gtc/Atc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182108	99182108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	28	351	0	ENST00000074304.5:c.2173G>A	p.Glu725Lys	p.E725K	ENST00000074304	NM_001134224.1	725	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0024900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	93	711	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225368476	225368476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	62	706	0	ENST00000264414.4:c.1270G>A	p.Glu424Lys	p.E424K	ENST00000264414	NM_003590.4	424	Gaa/Aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575194	48575194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	66	337	0	ENST00000342988.3:c.388C>T	p.Pro130Ser	p.P130S	ENST00000342988	NM_005359.5	130	Cca/Tca																																																																															
RAD52	5893	MSKCC	GRCh37	12	1040463	1040463	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	180	797	4	ENST00000358495.3:c.109C>A	p.Gln37Lys	p.Q37K	ENST00000358495	NM_134424.2	37	Cag/Aag																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66525014	66525014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	128	256	0	ENST00000358598.2:c.773C>T	p.Ser258Phe	p.S258F	ENST00000358598	NM_212471.2	258	tCt/tTt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61722610	61722610	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	66	444	0	ENST00000401558.2:c.1027C>G	p.Leu343Val	p.L343V	ENST00000401558	NM_003400.3	343	Ctc/Gtc																																																																															
MET	4233	MSKCC	GRCh37	7	116412039	116412046	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAAGGTA	AGAAGGTA	TG			P-0024900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1127	722	869	4	ENST00000397752.3:c.3024_3028+3delinsTG		p.X1008_splice	ENST00000397752	NM_000245.2	1008																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	122	671	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518388	8518388	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	37	274	0	ENST00000356435.5:c.1003A>G	p.Thr335Ala	p.T335A	ENST00000356435		335	Aca/Gca																																																																															
MAX	4149	MSKCC	GRCh37	14	65544630	65544630	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0024901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	84	559	0	ENST00000358664.4:c.295+1G>A		p.X99_splice	ENST00000358664	NM_002382.4	99																																																																																
PDPK1	5170	MSKCC	GRCh37	16	2647272	2647272	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	122	592	1	ENST00000342085.4:c.1550A>T	p.His517Leu	p.H517L	ENST00000342085	NM_002613.4	517	cAc/cTc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128036800	128036800	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	85	612	0	ENST00000285398.2:c.1679T>G	p.Val560Gly	p.V560G	ENST00000285398	NM_000122.1	560	gTc/gGc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117874180	117874180	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0024901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	84	366	2	ENST00000297338.2:c.275-1G>T		p.X92_splice	ENST00000297338	NM_006265.2	92																																																																																
VTCN1	79679	MSKCC	GRCh37	1	117695938	117695938	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142973937		P-0024903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	43	499	0	ENST00000369458.3:c.499C>T	p.Arg167Trp	p.R167W	ENST00000369458	NM_024626.3	167	Cgg/Tgg																																																																															
ALK	238	MSKCC	GRCh37	2	29443613	29443613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	158	855	0	ENST00000389048.3:c.3604G>A	p.Gly1202Arg	p.G1202R	ENST00000389048	NM_004304.4	1202	Gga/Aga																																																																															
HGF	3082	MSKCC	GRCh37	7	81374320	81374320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	110	313	0	ENST00000222390.5:c.742G>A	p.Glu248Lys	p.E248K	ENST00000222390	NM_000601.4	248	Gaa/Aaa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141499	11141499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	335	718	0	ENST00000344626.4:c.3476G>A	p.Gly1159Glu	p.G1159E	ENST00000344626	NM_003072.3	1159	gGg/gAg																																																																															
ALK	238	MSKCC	GRCh37	2	29443631	29443631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	185	855	3	ENST00000389048.3:c.3586C>A	p.Leu1196Met	p.L1196M	ENST00000389048	NM_004304.4	1196	Ctg/Atg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41256919	41256919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	433	840	1	ENST00000357654.3:c.267del	p.Ile90PhefsTer29	p.I90Ffs*29	ENST00000357654	NM_007294.3	89	atC/at																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469139	25469139	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	439	883	1	ENST00000264709.3:c.1319G>A	p.Trp440Ter	p.W440*	ENST00000264709	NM_175629.2	440	tGg/tAg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128038203	128038203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	174	612	0	ENST00000285398.2:c.1347G>C	p.Lys449Asn	p.K449N	ENST00000285398	NM_000122.1	449	aaG/aaC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	29	602	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0024910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	341	679	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112174784	112174784	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0024910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	71	361	0	ENST00000257430.4:c.3493A>T	p.Lys1165Ter	p.K1165*	ENST00000257430	NM_000038.5	1165	Aaa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs387906846		P-0024910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	118	466	0	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154797	2154797	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	155	761	0	ENST00000434045.2:c.424A>T	p.Thr142Ser	p.T142S	ENST00000434045	NM_001127598.1	142	Acc/Tcc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987106	36987106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	394	650	1	ENST00000354822.5:c.583C>T	p.Arg195Trp	p.R195W	ENST00000354822	NM_001079668.2	195	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175213	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0024910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	55	228	0	ENST00000257430.4:c.3923_3924del	p.Lys1308ArgfsTer6	p.K1308Rfs*6	ENST00000257430	NM_000038.5	1307	atAAaa/ataa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965617	93965617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	120	585	0	ENST00000369303.4:c.2311G>C	p.Val771Leu	p.V771L	ENST00000369303	NM_004440.3	771	Gtt/Ctt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	24	456	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	52	531	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11217230	11217230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	130	433	0	ENST00000361445.4:c.4448G>A	p.Cys1483Tyr	p.C1483Y	ENST00000361445	NM_004958.3	1483	tGc/tAc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37872557	37872557	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	65	277	0	ENST00000269571.5:c.1517G>T	p.Gly506Val	p.G506V	ENST00000269571		506	gGc/gTc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118864	70118864	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	84	263	0	ENST00000245479.2:c.436del	p.Leu146Ter	p.L146*	ENST00000245479	NM_000346.3	146	Ctg/tg																																																																															
APC	324	MSKCC	GRCh37	5	112174405	112174406	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	17	202	0	ENST00000257430.4:c.3116dup	p.Arg1040LysfsTer8	p.R1040Kfs*8	ENST00000257430	NM_000038.5	1038	-/G																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	176	468	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	216	517	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	171	416	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	568	560	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	333	579	1	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460401	149460401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	244	535	2	ENST00000286301.3:c.236C>T	p.Thr79Met	p.T79M	ENST00000286301	NM_005211.3	79	aCg/aTg																																																																															
ALK	238	MSKCC	GRCh37	2	29451784	29451784	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772809305		P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	320	638	5	ENST00000389048.3:c.2781del	p.Cys928AlafsTer11	p.C928Afs*11	ENST00000389048	NM_004304.4	927	ggG/gg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	533	553	13	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	216	432	2	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	205	552	3	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																																																															
RAD52	5893	MSKCC	GRCh37	12	1039289	1039289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11571421		P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	273	534	0	ENST00000358495.3:c.208C>T	p.Arg70Trp	p.R70W	ENST00000358495	NM_134424.2	70	Cgg/Tgg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118924	70118926	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	302	611	0	ENST00000245479.2:c.499_501del	p.Lys167del	p.K167del	ENST00000245479	NM_000346.3	166	AAG/-																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	305	711	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
ATRX	546	MSKCC	GRCh37	X	76939674	76939674	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	258	737	2	ENST00000373344.5:c.1074delA	p.Lys358AsnfsTer2	p.K358Nfs*2	ENST00000373344	NM_000489.3	358	aaA/aa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206909	162206909	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150562946		P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	188	410	1	ENST00000366898.1:c.766C>T	p.Arg256Cys	p.R256C	ENST00000366898	NM_004562.2	256	Cgc/Tgc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781402	3781402	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	283	546	0	ENST00000262367.5:c.4963del	p.Leu1655CysfsTer89	p.L1655Cfs*89	ENST00000262367	NM_004380.2	1655	Ctg/tg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120459100	120459100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	292	587	0	ENST00000256646.2:c.6245C>T	p.Pro2082Leu	p.P2082L	ENST00000256646	NM_024408.3	2082	cCt/cTt																																																																															
ATM	472	MSKCC	GRCh37	11	108216512	108216512	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	394	444	2	ENST00000278616.4:c.8461A>G	p.Met2821Val	p.M2821V	ENST00000278616	NM_000051.3	2821	Atg/Gtg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307495	118307500	+	inframe_deletion	In_Frame_Del	DEL	TCGTCT	TCGTCT	-			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	187	477	0	ENST00000534358.1:c.279_284del	p.Ser97_Ser98del	p.S97_S98del	ENST00000534358	NM_005933.3	90	TCGTCT/-																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125507403	125507403	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	199	463	0	ENST00000428830.2:c.783del	p.Asp262IlefsTer42	p.D262Ifs*42	ENST00000428830	NM_001114121.2	260	Aaa/aa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864218	57864218	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	245	525	4	ENST00000228682.2:c.1700del	p.Pro567LeufsTer46	p.P567Lfs*46	ENST00000228682	NM_005269.2	565	ttC/tt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32971138	32971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	188	589	2	ENST00000380152.3:c.9605C>T	p.Pro3202Leu	p.P3202L	ENST00000380152		3202	cCg/cTg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103504501	103504501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	118	343	0	ENST00000355739.4:c.122G>T	p.Gly41Val	p.G41V	ENST00000355739	NM_000123.3	41	gGa/gTa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103520471	103520471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	120	294	0	ENST00000355739.4:c.2542C>T	p.Arg848Trp	p.R848W	ENST00000355739	NM_000123.3	848	Cgg/Tgg																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348864	11348864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	102	156	0	ENST00000332029.2:c.472C>G	p.Pro158Ala	p.P158A	ENST00000332029	NM_003745.1	158	Ccg/Gcg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346520	89346520	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	236	590	0	ENST00000301030.4:c.6430C>T	p.Gln2144Ter	p.Q2144*	ENST00000301030	NM_001256183.1	2144	Cag/Tag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682564	37682564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	160	289	0	ENST00000447079.4:c.3755C>T	p.Ala1252Val	p.A1252V	ENST00000447079	NM_015083.1	1252	gCa/gTa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463271	25463271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	260	457	3	ENST00000264709.3:c.2222C>T	p.Ala741Val	p.A741V	ENST00000264709	NM_175629.2	741	gCg/gTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41554418	41554418	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	260	429	0	ENST00000263253.7:c.3504G>T	p.Leu1168Phe	p.L1168F	ENST00000263253	NM_001429.3	1168	ttG/ttT																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1795767	1795767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	122	302	1	ENST00000260795.2:c.106G>A	p.Ala36Thr	p.A36T	ENST00000260795		36	Gca/Aca																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542812	187542812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	194	510	0	ENST00000441802.2:c.4928G>A	p.Gly1643Asp	p.G1643D	ENST00000441802	NM_005245.3	1643	gGc/gAc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176666844	176666844	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	216	470	0	ENST00000439151.2:c.4280G>T	p.Gly1427Val	p.G1427V	ENST00000439151	NM_022455.4	1427	gGg/gTg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912275	29912275	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	330	694	0	ENST00000376809.5:c.896-2A>G		p.X299_splice	ENST00000376809	NM_002116.7	299																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151860048	151860048	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	169	341	0	ENST00000262189.6:c.10614T>A	p.Asn3538Lys	p.N3538K	ENST00000262189	NM_170606.2	3538	aaT/aaA																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372037	55372037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	269	506	1	ENST00000297316.4:c.727G>A	p.Gly243Arg	p.G243R	ENST00000297316	NM_022454.3	243	Ggg/Agg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978659	70978659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	301	653	0	ENST00000276594.2:c.994C>T	p.Arg332Cys	p.R332C	ENST00000276594	NM_024504.3	332	Cgc/Tgc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211521	98211521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	275	464	0	ENST00000331920.6:c.3634G>A	p.Gly1212Ser	p.G1212S	ENST00000331920	NM_000264.3	1212	Ggc/Agc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409753	139409753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	298	595	2	ENST00000277541.6:c.2003C>T	p.Pro668Leu	p.P668L	ENST00000277541	NM_017617.3	668	cCg/cTg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44910997	44910997	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	238	490	0	ENST00000377967.4:c.698A>G	p.Gln233Arg	p.Q233R	ENST00000377967	NM_021140.2	233	cAg/cGg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44966655	44966655	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	109	348	1	ENST00000377967.4:c.3879G>T	p.Lys1293Asn	p.K1293N	ENST00000377967	NM_021140.2	1293	aaG/aaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	36	559	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879657	37879657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	38	444	0	ENST00000269571.5:c.2032C>T	p.Arg678Trp	p.R678W	ENST00000269571		678	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112179255	112179255	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	32	342	0	ENST00000257430.4:c.7964A>C	p.Glu2655Ala	p.E2655A	ENST00000257430	NM_000038.5	2655	gAg/gCg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965646	93965646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	30	417	0	ENST00000369303.4:c.2282C>T	p.Ala761Val	p.A761V	ENST00000369303	NM_004440.3	761	gCt/gTt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508932	106508932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	218	313	0	ENST00000359195.3:c.926C>T	p.Thr309Met	p.T309M	ENST00000359195	NM_002649.2	309	aCg/aTg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849866	156849866	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	395	540	0	ENST00000524377.1:c.2122A>G	p.Ser708Gly	p.S708G	ENST00000524377	NM_002529.3	708	Agc/Ggc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21565432	21565432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	497	653	0	ENST00000382592.4:c.454G>A	p.Val152Ile	p.V152I	ENST00000382592	NM_014572.2	152	Gtc/Atc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912172	32912173	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-	rs80359395		P-0025097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	450	651	1	ENST00000380152.3:c.3680_3681del	p.Leu1227GlnfsTer5	p.L1227Qfs*5	ENST00000380152		1227	cTG/c																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813918	50813918	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	310	584	0	ENST00000398568.2:c.1472C>G	p.Pro491Arg	p.P491R	ENST00000398568	NM_001042412.1	491	cCa/cGa																																																																															
CARM1	10498	MSKCC	GRCh37	19	11024662	11024662	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	311	458	0	ENST00000327064.4:c.779G>C	p.Gly260Ala	p.G260A	ENST00000327064	NM_199141.1	260	gGc/gCc																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495713	72495713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	400	552	0	ENST00000477973.2:c.357C>T	p.Thr120Ile	p.T120I	ENST00000477973	NM_012234.5	120	aCc/aTc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	80	444	0				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578513	7578513	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	19	922	0	ENST00000269305.4:c.417G>C	p.Lys139Asn	p.K139N	ENST00000269305	NM_001126112.2	139	aaG/aaC																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913355		P-0025107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	133	463	0	ENST00000288602.6:c.1406G>T	p.Gly469Val	p.G469V	ENST00000288602	NM_004333.4	469	gGa/gTa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119842	70119842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	227	742	0	ENST00000245479.2:c.844G>A	p.Val282Ile	p.V282I	ENST00000245479	NM_000346.3	282	Gtc/Atc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs878854073		P-0025107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	100	539	2	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
ERCC5	2073	MSKCC	GRCh37	13	103519027	103519027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	180	486	0	ENST00000355739.4:c.2365G>A	p.Glu789Lys	p.E789K	ENST00000355739	NM_000123.3	789	Gaa/Aaa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48033734	48033734	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	113	372	0	ENST00000234420.5:c.3947del	p.Gly1316AspfsTer11	p.G1316Dfs*11	ENST00000234420	NM_000179.2	1315	aaG/aa																																																																															
APC	324	MSKCC	GRCh37	5	112179224	112179224	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	119	378	0	ENST00000257430.4:c.7933T>A	p.Tyr2645Asn	p.Y2645N	ENST00000257430	NM_000038.5	2645	Tat/Aat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0025112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	115	574	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0025112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	192	593	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600446	10600446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	251	690	0	ENST00000171111.5:c.1409G>A	p.Arg470His	p.R470H	ENST00000171111	NM_203500.1	470	cGt/cAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041205	47041205	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	255	804	0	ENST00000329236.7:c.1400del	p.Pro467LeufsTer159	p.P467Lfs*159	ENST00000329236	NM_001204466.1	467	Cct/ct																																																																															
CIC	23152	MSKCC	GRCh37	19	42799180	42799180	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	222	659	0	ENST00000575354.2:c.4664G>T	p.Gly1555Val	p.G1555V	ENST00000575354	NM_015125.3	1555	gGg/gTg																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20159750	20159750	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	161	497	1	ENST00000379607.5:c.9G>T	p.Lys3Asn	p.K3N	ENST00000379607	NM_001412.3	3	aaG/aaT																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974788	21974796	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCGAAGG	AGCCGAAGG	C			P-0025112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	52	189	0	ENST00000304494.5:c.31_39delinsG	p.Pro11GlyfsTer30	p.P11Gfs*30	ENST00000304494	NM_000077.4	11	CCTTCGGCT/G																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	63	569	2	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170774	11170774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	35	627	0	ENST00000344626.4:c.4822C>T	p.Arg1608Trp	p.R1608W	ENST00000344626	NM_003072.3	1608	Cgg/Tgg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712836	43712836	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	87	738	2	ENST00000382044.4:c.4348G>T	p.Asp1450Tyr	p.D1450Y	ENST00000382044	NM_001141980.1	1450	Gac/Tac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916178	9916178	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	34	547	0	ENST00000330684.3:c.2111A>T	p.Tyr704Phe	p.Y704F	ENST00000330684	NM_001134407.1	704	tAc/tTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135057	11135057	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	61	645	2	ENST00000344626.4:c.3024C>A	p.Tyr1008Ter	p.Y1008*	ENST00000344626	NM_003072.3	1008	taC/taA																																																																															
CIC	23152	MSKCC	GRCh37	19	42795216	42795216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	155	634	2	ENST00000575354.2:c.2296G>T	p.Gly766Cys	p.G766C	ENST00000575354	NM_015125.3	766	Ggc/Tgc																																																																															
ATR	545	MSKCC	GRCh37	3	142215903	142215903	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	37	440	0	ENST00000350721.4:c.5690A>T	p.Lys1897Met	p.K1897M	ENST00000350721	NM_001184.3	1897	aAg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	212	484	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	172	226	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	289	379	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56494873	56494873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	190	337	0	ENST00000267101.3:c.3230G>A	p.Arg1077Gln	p.R1077Q	ENST00000267101	NM_001982.3	1077	cGg/cAg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15989602	15989602	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	94	242	0	ENST00000268712.3:c.3171C>G	p.Ile1057Met	p.I1057M	ENST00000268712	NM_006311.3	1057	atC/atG																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257557	16257557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	84	321	0	ENST00000375759.3:c.4822G>A	p.Glu1608Lys	p.E1608K	ENST00000375759	NM_015001.2	1608	Gag/Aag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164717	47164717	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	66	290	0	ENST00000409792.3:c.1409C>G	p.Ser470Ter	p.S470*	ENST00000409792	NM_014159.6	470	tCa/tGa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257779	16257779	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	102	321	0	ENST00000375759.3:c.5044G>C	p.Glu1682Gln	p.E1682Q	ENST00000375759	NM_015001.2	1682	Gaa/Caa																																																																															
DDR2	4921	MSKCC	GRCh37	1	162746135	162746135	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	207	211	0	ENST00000367921.3:c.2258G>A	p.Trp753Ter	p.W753*	ENST00000367921	NM_006182.2	753	tGg/tAg																																																																															
RET	5979	MSKCC	GRCh37	10	43609046	43609046	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	252	304	0	ENST00000355710.3:c.1802G>T	p.Gly601Val	p.G601V	ENST00000355710	NM_020975.4	601	gGg/gTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18443843	18443843	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	57	363	0	ENST00000266497.5:c.816G>T	p.Trp272Cys	p.W272C	ENST00000266497		272	tgG/tgT																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109709	115109709	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	147	420	0	ENST00000257566.3:c.2169C>A	p.Ser723Arg	p.S723R	ENST00000257566	NM_016569.3	723	agC/agA																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216899	7216899	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	137	295	0	ENST00000380728.2:c.622C>G	p.Gln208Glu	p.Q208E	ENST00000380728		208	Cag/Gag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16012099	16012099	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	180	334	0	ENST00000268712.3:c.2182+1G>T		p.X728_splice	ENST00000268712	NM_006311.3	728																																																																																
BRD4	23476	MSKCC	GRCh37	19	15349643	15349643	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	123	328	0	ENST00000263377.2:c.3931C>T	p.Gln1311Ter	p.Q1311*	ENST00000263377	NM_058243.2	1311	Cag/Tag																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353711	15353711	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	316	395	0	ENST00000263377.2:c.3169G>T	p.Gly1057Cys	p.G1057C	ENST00000263377	NM_058243.2	1057	Ggt/Tgt																																																																															
CIC	23152	MSKCC	GRCh37	19	42791335	42791335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	130	366	0	ENST00000575354.2:c.395C>T	p.Ser132Phe	p.S132F	ENST00000575354	NM_015125.3	132	tCc/tTc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096264	178096264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	105	298	0	ENST00000397062.3:c.1067C>T	p.Ser356Leu	p.S356L	ENST00000397062	NM_006164.4	356	tCa/tTa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096291	178096291	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	111	335	0	ENST00000397062.3:c.1040C>G	p.Ser347Ter	p.S347*	ENST00000397062	NM_006164.4	347	tCa/tGa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790069	40790070	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	115	426	1	ENST00000373198.4:c.2661_2662delinsAT	p.Ile888Phe	p.I888F	ENST00000373198	NM_133170.3	887	gcCAtc/gcATtc																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42845291	42845291	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	111	354	0	ENST00000398585.3:c.971C>A	p.Thr324Asn	p.T324N	ENST00000398585	NM_001135099.1	324	aCc/aAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280104	66280104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	172	303	1	ENST00000273854.3:c.1585G>T	p.Gly529Cys	p.G529C	ENST00000273854	NM_004439.5	529	Ggc/Tgc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143067138	143067138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	100	320	0	ENST00000262992.4:c.1575G>C	p.Trp525Cys	p.W525C	ENST00000262992	NM_001101669.1	525	tgG/tgC																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31422936	31422936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	254	551	4	ENST00000344624.3:c.3377G>T	p.Arg1126Met	p.R1126M	ENST00000344624		1126	aGg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112177449	112177449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	96	276	0	ENST00000257430.4:c.6158C>T	p.Pro2053Leu	p.P2053L	ENST00000257430	NM_000038.5	2053	cCt/cTt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435856	149435856	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	341	445	1	ENST00000286301.3:c.2368C>A	p.His790Asn	p.H790N	ENST00000286301	NM_005211.3	790	Cat/Aat																																																																															
CARD11	84433	MSKCC	GRCh37	7	2977593	2977593	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	286	384	0	ENST00000396946.4:c.1091G>T	p.Arg364Leu	p.R364L	ENST00000396946	NM_032415.4	364	cGc/cTc																																																																															
FANCC	2176	MSKCC	GRCh37	9	97887388	97887388	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	111	362	0	ENST00000289081.3:c.976C>G	p.Leu326Val	p.L326V	ENST00000289081	NM_000136.2	326	Ctg/Gtg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229503	98229503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	118	376	0	ENST00000331920.6:c.2455C>T	p.Leu819Phe	p.L819F	ENST00000331920	NM_000264.3	819	Ctt/Ttt																																																																															
TSC1	7248	MSKCC	GRCh37	9	135802689	135802689	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	52	248	0	ENST00000298552.3:c.109del	p.Arg37ValfsTer6	p.R37Vfs*6	ENST00000298552	NM_001162426.1	37	Cgt/gt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790069	40790069	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	115	420	0	ENST00000373198.4:c.2662A>T	p.Ile888Phe	p.I888F	ENST00000373198	NM_133170.3	888	Atc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	176	593	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0024987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	208	437	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100430	8100430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	52	490	0	ENST00000346208.3:c.404C>T	p.Pro135Leu	p.P135L	ENST00000346208		135	cCg/cTg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117407	115117408	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	154	447	0	ENST00000257566.3:c.766dup	p.Arg256LysfsTer4	p.R256Kfs*4	ENST00000257566	NM_016569.3	256	aga/aAga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348839	89348839	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	179	705	0	ENST00000301030.4:c.4111G>C	p.Ala1371Pro	p.A1371P	ENST00000301030	NM_001256183.1	1371	Gcc/Ccc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438274	56438275	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0024987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	36	401	0	ENST00000407977.2:c.718_719insGA	p.Ile240ArgfsTer180	p.I240Rfs*180	ENST00000407977		240	atc/aGAtc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604748	48604748	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	114	400	0	ENST00000342988.3:c.1570T>C	p.Trp524Arg	p.W524R	ENST00000342988	NM_005359.5	524	Tgg/Cgg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41278094	41278094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	88	376	0	ENST00000349496.5:c.1970C>A	p.Ala657Asp	p.A657D	ENST00000349496	NM_001904.3	657	gCt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574000	7574000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	263	781	0	ENST00000269305.4:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000269305	NM_001126112.2	343	Gag/Tag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168519	56168528	+	frameshift_variant	Frame_Shift_Del	DEL	GATCTAAGTG	GATCTAAGTG	-			P-0025031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	151	485	0	ENST00000399503.3:c.1477_1486del	p.Ser493AspfsTer61	p.S493Dfs*61	ENST00000399503	NM_005921.1	492	aGATCTAAGTGg/ag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	146	540	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	170	540	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
MPL	4352	MSKCC	GRCh37	1	43804953	43804953	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	62	315	1	ENST00000372470.3:c.408del	p.Ser137ValfsTer29	p.S137Vfs*29	ENST00000372470	NM_005373.2	135	Ccc/cc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779211	3779211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783507		P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	21	276	1	ENST00000262367.5:c.5837del	p.Pro1946HisfsTer30	p.P1946Hfs*30	ENST00000262367	NM_004380.2	1946	cCa/ca																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	77	367	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	291	541	1	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	124	510	2	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874637	35874637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	33	448	4	ENST00000303115.3:c.799del	p.Arg267GlyfsTer28	p.R267Gfs*28	ENST00000303115	NM_002185.3	265	Aaa/aa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822585	72822586	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	31	325	1	ENST00000268489.5:c.9589dupC	p.Gln3197ProfsTer42	p.Q3197Pfs*42	ENST00000268489	NM_006885.3	3197	cag/cCag																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	133	507	5	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	100	413	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864938	117864938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	89	336	0	ENST00000297338.2:c.1171C>T	p.Arg391Cys	p.R391C	ENST00000297338	NM_006265.2	391	Cgc/Tgc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347930	347930	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141148118		P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	63	557	2	ENST00000262320.3:c.1576G>A	p.Ala526Thr	p.A526T	ENST00000262320	NM_003502.3	526	Gcg/Acg																																																																															
MST1	4485	MSKCC	GRCh37	3	49722761	49722761	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs62262682		P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	10	33	0	ENST00000449682.2:c.1478G>T	p.Arg493Leu	p.R493L	ENST00000449682	NM_020998.3	493	cGt/cTt																																																																															
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	137	633	3	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371645	55371645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	30	498	0	ENST00000297316.4:c.335C>T	p.Ala112Val	p.A112V	ENST00000297316	NM_022454.3	112	gCg/gTg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244155	153244156	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	150	611	0	ENST00000281708.4:c.2001dup	p.Ser668GlufsTer26	p.S668Efs*26	ENST00000281708	NM_033632.3	667	-/G																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199945	138199945	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	57	362	2	ENST00000237289.4:c.1368delG	p.Pro457LeufsTer20	p.P457Lfs*20	ENST00000237289	NM_001270507.1	455	Ggg/gg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740171	162740171	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs189206909		P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	153	540	0	ENST00000367921.3:c.1373G>A	p.Arg458His	p.R458H	ENST00000367921	NM_006182.2	458	cGc/cAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29654856	29654856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	32	295	0	ENST00000358273.4:c.5608C>T	p.Arg1870Trp	p.R1870W	ENST00000358273	NM_001042492.2	1870	Cgg/Tgg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905288	50905288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	42	692	1	ENST00000440232.2:c.496C>T	p.Arg166Trp	p.R166W	ENST00000440232	NM_002691.3	166	Cgg/Tgg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906603	32906603	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	42	409	0	ENST00000380152.3:c.994del	p.Ile332PhefsTer17	p.I332Ffs*17	ENST00000380152		330	Aaa/aa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	126	511	1	ENST00000337652.1:c.1561dupC	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	31	279	2	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																																																															
AR	367	MSKCC	GRCh37	X	66765598	66765598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	137	694	0	ENST00000374690.3:c.610G>A	p.Glu204Lys	p.E204K	ENST00000374690	NM_000044.3	204	Gaa/Aaa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	182	655	3	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	188	699	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226899	2226899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	51	415	2	ENST00000398665.3:c.4379C>T	p.Thr1460Met	p.T1460M	ENST00000398665	NM_032482.2	1460	aCg/aTg																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480010	50480010	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	121	572	0	ENST00000394963.4:c.249del	p.Asn84ThrfsTer79	p.N84Tfs*79	ENST00000394963	NM_003076.4	82	Ggg/gg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	130	575	5	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																															
ARAF	369	MSKCC	GRCh37	X	47426737	47426737	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200106543		P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	71	524	1	ENST00000377045.4:c.982C>T	p.Arg328Trp	p.R328W	ENST00000377045	NM_001654.4	328	Cgg/Tgg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646467	23646467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	75	625	0	ENST00000261584.4:c.1400G>A	p.Gly467Asp	p.G467D	ENST00000261584	NM_024675.3	467	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	150	570	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484206	8484206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	123	592	1	ENST00000356435.5:c.3326G>A	p.Arg1109His	p.R1109H	ENST00000356435		1109	cGt/cAt																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599251	28599251	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	163	635	0	ENST00000253063.3:c.701delC	p.Pro234LeufsTer13	p.P234Lfs*13	ENST00000253063	NM_031459.4	233	Ccc/cc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048145	180048145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	70	670	1	ENST00000261937.6:c.2128G>A	p.Val710Met	p.V710M	ENST00000261937	NM_182925.4	710	Gtg/Atg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166275	32166275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	42	550	0	ENST00000375023.3:c.4679C>T	p.Ala1560Val	p.A1560V	ENST00000375023	NM_004557.3	1560	gCg/gTg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241923	72241923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	103	508	0	ENST00000357731.5:c.467T>C	p.Val156Ala	p.V156A	ENST00000357731	NM_173808.2	156	gTc/gCc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302611	15302611	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	62	673	1	ENST00000263388.2:c.747delG	p.Thr250HisfsTer122	p.T250Hfs*122	ENST00000263388	NM_000435.2	249	ggG/gg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444317	50444317	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	97	334	1	ENST00000331340.3:c.247C>T	p.Arg83Ter	p.R83*	ENST00000331340	NM_006060.4	83	Cga/Tga																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775608	9775608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	51	460	2	ENST00000377346.4:c.151C>T	p.His51Tyr	p.H51Y	ENST00000377346	NM_005026.3	51	Cac/Tac																																																																															
NRAS	4893	MSKCC	GRCh37	1	115252284	115252284	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	94	552	0	ENST00000369535.4:c.356A>T	p.Asp119Val	p.D119V	ENST00000369535	NM_002524.4	119	gAt/gTt																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115266563	115266564	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	137	600	0	ENST00000438362.2:c.1951dup	p.Leu651ProfsTer5	p.L651Pfs*5	ENST00000438362	NM_001242891.1	651	ctg/cCtg																																																																															
YAP1	10413	MSKCC	GRCh37	11	102033228	102033228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	162	573	6	ENST00000282441.5:c.614C>T	p.Ala205Val	p.A205V	ENST00000282441	NM_001130145.2	205	gCc/gTc																																																																															
ATM	472	MSKCC	GRCh37	11	108235837	108235837	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	86	473	0	ENST00000278616.4:c.8879G>A	p.Trp2960Ter	p.W2960*	ENST00000278616	NM_000051.3	2960	tGg/tAg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307394	118307394	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	11	36	0	ENST00000534358.1:c.173del	p.Pro58ArgfsTer92	p.P58Rfs*92	ENST00000534358	NM_005933.3	56	tCc/tc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243938	46243938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	41	555	1	ENST00000334344.6:c.2032G>T	p.Ala678Ser	p.A678S	ENST00000334344	NM_152641.2	678	Gca/Tca																																																																															
SETD8	387893	MSKCC	GRCh37	12	123889578	123889578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	18	201	0	ENST00000330479.4:c.805G>T	p.Gly269Cys	p.G269C	ENST00000330479	NM_020382.3	269	Ggc/Tgc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563390	21563390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	160	678	2	ENST00000382592.4:c.529G>A	p.Gly177Ser	p.G177S	ENST00000382592	NM_014572.2	177	Ggc/Agc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911476	32911476	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	49	452	0	ENST00000380152.3:c.2984G>C	p.Gly995Ala	p.G995A	ENST00000380152		995	gGa/gCa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225330	2225330	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	38	544	0	ENST00000326181.6:c.1415T>C	p.Val472Ala	p.V472A	ENST00000326181	NM_032271.2	472	gTg/gCg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862754	9862754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	28	478	0	ENST00000330684.3:c.2549C>T	p.Thr850Met	p.T850M	ENST00000330684	NM_001134407.1	850	aCg/aTg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56872935	56872935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	32	471	0	ENST00000308159.5:c.2090C>T	p.Thr697Ile	p.T697I	ENST00000308159	NM_014669.4	697	aCc/aTc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832599	72832599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	33	291	0	ENST00000268489.5:c.3982C>A	p.Leu1328Met	p.L1328M	ENST00000268489	NM_006885.3	1328	Ctg/Atg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805352	89805352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	47	528	0	ENST00000389301.3:c.4198C>T	p.Arg1400Cys	p.R1400C	ENST00000389301	NM_000135.2	1400	Cgt/Tgt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1622324	1622325	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	103	546	0	ENST00000344749.5:c.639dup	p.Phe214LeufsTer40	p.F214Lfs*40	ENST00000344749	NM_001136139.2	213	-/C																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5215323	5215323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	40	540	2	ENST00000357368.4:c.4295G>A	p.Arg1432His	p.R1432H	ENST00000357368	NM_002850.3	1432	cGt/cAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231557	5231557	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150939732		P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	40	376	2	ENST00000357368.4:c.1919G>A	p.Arg640His	p.R640H	ENST00000357368	NM_002850.3	640	cGc/cAc																																																																															
INSR	3643	MSKCC	GRCh37	19	7167979	7167979	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs201978448		P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	147	530	0	ENST00000302850.5:c.1610C>T	p.Ala537Val	p.A537V	ENST00000302850	NM_000208.2	537	gCc/gTc																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14626843	14626843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	174	641	1	ENST00000254322.2:c.932G>A	p.Arg311His	p.R311H	ENST00000254322	NM_006145.1	311	cGt/cAt																																																																															
AKT2	208	MSKCC	GRCh37	19	40741245	40741245	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	47	506	0	ENST00000392038.2:c.1188del	p.Ser398AlafsTer177	p.S398Afs*177	ENST00000392038	NM_001626.4	396	ggG/gg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25964998	25964998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	50	436	1	ENST00000435504.4:c.4208G>A	p.Arg1403His	p.R1403H	ENST00000435504		1403	cGc/cAc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39746892	39746892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	39	319	1	ENST00000361337.2:c.1906C>T	p.Pro636Ser	p.P636S	ENST00000361337	NM_003286.2	636	Cca/Tca																																																																															
NF2	4771	MSKCC	GRCh37	22	30090766	30090766	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	42	574	2	ENST00000338641.4:c.1763G>T	p.Arg588Leu	p.R588L	ENST00000338641	NM_000268.3	588	cGa/cTa																																																																															
RAF1	5894	MSKCC	GRCh37	3	12650320	12650320	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	43	687	0	ENST00000251849.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000251849	NM_002880.3	176	Tgt/Cgt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713806	30713806	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	132	539	0	ENST00000359013.4:c.1206del	p.His402GlnfsTer11	p.H402Qfs*11	ENST00000359013	NM_001024847.2	402	caC/ca																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52713679	52713679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	84	500	0	ENST00000394830.3:c.49G>A	p.Gly17Arg	p.G17R	ENST00000394830	NM_018313.4	17	Ggg/Agg																																																																															
ATR	545	MSKCC	GRCh37	3	142186894	142186894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	45	469	0	ENST00000350721.4:c.6569G>A	p.Arg2190His	p.R2190H	ENST00000350721	NM_001184.3	2190	cGt/cAt																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374711	149374711	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	75	507	2	ENST00000360632.3:c.383del	p.Pro128ArgfsTer5	p.P128Rfs*5	ENST00000360632	NM_015472.4	128	cCg/cg																																																																															
TET2	54790	MSKCC	GRCh37	4	106155832	106155832	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	42	440	0	ENST00000380013.4:c.733A>C	p.Thr245Pro	p.T245P	ENST00000380013	NM_001127208.2	245	Acc/Ccc																																																																															
SDHA	6389	MSKCC	GRCh37	5	226110	226110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	107	510	0	ENST00000264932.6:c.569G>A	p.Cys190Tyr	p.C190Y	ENST00000264932	NM_004168.2	190	tGc/tAc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38958784	38958784	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	93	446	0	ENST00000357387.3:c.2328A>T	p.Glu776Asp	p.E776D	ENST00000357387	NM_152756.3	776	gaA/gaT																																																																															
APC	324	MSKCC	GRCh37	5	112170727	112170727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	156	598	1	ENST00000257430.4:c.1823C>T	p.Ala608Val	p.A608V	ENST00000257430	NM_000038.5	608	gCt/gTt																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27777858	27777858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	44	253	1	ENST00000369163.2:c.7C>T	p.Arg3Cys	p.R3C	ENST00000369163	NM_003536.2	3	Cgt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55211028	55211028	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	38	560	0	ENST00000275493.2:c.271A>G	p.Ile91Val	p.I91V	ENST00000275493	NM_005228.3	91	Att/Gtt																																																																															
MET	4233	MSKCC	GRCh37	7	116411644	116411644	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	169	643	0	ENST00000397752.3:c.2823A>G	p.Ile941Met	p.I941M	ENST00000397752	NM_000245.2	941	atA/atG																																																																															
PREX2	80243	MSKCC	GRCh37	8	69143599	69143599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	45	404	0	ENST00000288368.4:c.4807G>T	p.Ala1603Ser	p.A1603S	ENST00000288368	NM_024870.2	1603	Gct/Tct																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518282	8518282	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	44	342	2	ENST00000356435.5:c.1109T>A	p.Ile370Asn	p.I370N	ENST00000356435		370	aTt/aAt																																																																															
TEK	7010	MSKCC	GRCh37	9	27206713	27206713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	77	528	0	ENST00000380036.4:c.2498G>A	p.Gly833Asp	p.G833D	ENST00000380036	NM_000459.3	833	gGc/gAc																																																																															
TEK	7010	MSKCC	GRCh37	9	27220141	27220141	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	119	474	0	ENST00000380036.4:c.3198G>T	p.Glu1066Asp	p.E1066D	ENST00000380036	NM_000459.3	1066	gaG/gaT																																																																															
RXRA	6256	MSKCC	GRCh37	9	137325984	137325984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	56	512	0	ENST00000481739.1:c.1172C>T	p.Ala391Val	p.A391V	ENST00000481739	NM_002957.4	391	gCg/gTg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53227751	53227751	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	55	597	0	ENST00000375401.3:c.2437C>T	p.Gln813Ter	p.Q813*	ENST00000375401	NM_004187.3	813	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	335	597	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0025119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	294	534	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857925	9857925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	190	479	1	ENST00000330684.3:c.3476G>A	p.Arg1159His	p.R1159H	ENST00000330684	NM_001134407.1	1159	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584497	48584497	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0025119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	142	315	1	ENST00000342988.3:c.670C>T	p.Gln224Ter	p.Q224*	ENST00000342988	NM_005359.5	224	Cag/Tag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030329	180030329	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142322370		P-0025119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	518	596	1	ENST00000261937.6:c.3955C>T	p.Arg1319Trp	p.R1319W	ENST00000261937	NM_182925.4	1319	Cgg/Tgg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371912	55371912	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	160	344	0	ENST00000297316.4:c.602G>C	p.Gly201Ala	p.G201A	ENST00000297316	NM_022454.3	201	gGc/gCc																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781074	135781077	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0025119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	119	531	0	ENST00000298552.3:c.1888_1891del	p.Lys630GlnfsTer22	p.K630Qfs*22	ENST00000298552	NM_001162426.1	630	AAAGca/ca																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	98	398	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	92	226	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577069	7577069	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55819519		P-0005742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	41	724	0	ENST00000269305.4:c.869G>A	p.Arg290His	p.R290H	ENST00000269305	NM_001126112.2	290	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175951	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	115	365	1	ENST00000257430.4:c.4660delG	p.Glu1554LysfsTer11	p.E1554Kfs*11	ENST00000257430	NM_000038.5	1554	Gaa/aa																																																																															
AKT1	207	MSKCC	GRCh37	14	105243045	105243045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	129	1022	1	ENST00000349310.3:c.238T>C	p.Trp80Arg	p.W80R	ENST00000349310	NM_001014432.1	80	Tgg/Cgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	17	721	0	ENST00000269305.4:c.775G>C	p.Asp259His	p.D259H	ENST00000269305	NM_001126112.2	259	Gac/Cac																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0005742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	163	531	1	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520274	176520274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	53	436	0	ENST00000292408.4:c.1193G>A	p.Arg398Gln	p.R398Q	ENST00000292408	NM_213647.1	398	cGg/cAg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713609	30713609	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	103	366	0	ENST00000359013.4:c.1009G>T	p.Glu337Ter	p.E337*	ENST00000359013	NM_001024847.2	337	Gag/Tag																																																																															
ATR	545	MSKCC	GRCh37	3	142217536	142217536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	179	514	2	ENST00000350721.4:c.5461G>A	p.Asp1821Asn	p.D1821N	ENST00000350721	NM_001184.3	1821	Gac/Aac																																																																															
CD274	29126	MSKCC	GRCh37	9	5465595	5465595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148141792		P-0005742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	345	710	2	ENST00000381577.3:c.779G>A	p.Arg260His	p.R260H	ENST00000381577	NM_014143.3	260	cGt/cAt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741837	17741837	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199584989		P-0005742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	42	239	1	ENST00000250003.3:c.508G>A	p.Ala170Thr	p.A170T	ENST00000250003	NM_002478.4	170	Gcg/Acg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	129	515	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501191		P-0005860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	45	819	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089562	27089562	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	55	783	0	ENST00000324856.7:c.2518C>T	p.Gln840Ter	p.Q840*	ENST00000324856	NM_006015.4	840	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0024644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	207	894	4	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141426	11141426	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11537676		P-0024644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	193	835	0	ENST00000344626.4:c.3403C>T	p.Arg1135Trp	p.R1135W	ENST00000344626	NM_003072.3	1135	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0024644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	144	761	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
STK11	6794	MSKCC	GRCh37	19	1219344	1219345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTGT			P-0024644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	198	935	0	ENST00000326873.7:c.400_403dup	p.Gly135ValfsTer29	p.G135Vfs*29	ENST00000326873	NM_000455.4	132	-/GTGT																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	129	756	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	51	564	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0024651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	86	500	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	57	504	0	ENST00000342988.3:c.1255G>T	p.Gly419Trp	p.G419W	ENST00000342988	NM_005359.5	419	Ggg/Tgg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112329	115112329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	50	484	0	ENST00000257566.3:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000257566	NM_016569.3	471	Cgc/Tgc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67358572	67358572	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	107	869	0	ENST00000327367.4:c.80A>T	p.Glu27Val	p.E27V	ENST00000327367	NM_005902.3	27	gAg/gTg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395745	45395745	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	95	646	0	ENST00000262160.6:c.389G>C	p.Arg130Pro	p.R130P	ENST00000262160	NM_005901.5	130	cGa/cCa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851843	134851843	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	46	1109	0	ENST00000398015.3:c.1249C>A	p.Pro417Thr	p.P417T	ENST00000398015	NM_004441.4	417	Ccc/Acc																																																																															
ATR	545	MSKCC	GRCh37	3	142277474	142277474	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	111	548	0	ENST00000350721.4:c.1877del	p.Asp626ValfsTer15	p.D626Vfs*15	ENST00000350721	NM_001184.3	626	gAt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577542	+	frameshift_variant	Frame_Shift_Del	DEL	CGGTT	CGGTT	-			P-0024652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	296	793	1	ENST00000269305.4:c.739_743del	p.Asn247GlufsTer15	p.N247Efs*15	ENST00000269305	NM_001126112.2	247	AACCGg/g																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426767	212426768	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0024652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	62	621	0	ENST00000342788.4:c.2347_2348del	p.Leu783AlafsTer31	p.L783Afs*31	ENST00000342788	NM_005235.2	783	TTg/g																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	215	574	31	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	111	452	13	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	62	321	16	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0024655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	230	792	54	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5246048	5246048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	34	455	0	ENST00000357368.4:c.727G>A	p.Val243Met	p.V243M	ENST00000357368	NM_002850.3	243	Gtg/Atg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967975	93967975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	214	654	32	ENST00000369303.4:c.1952G>A	p.Arg651His	p.R651H	ENST00000369303	NM_004440.3	651	cGt/cAt																																																																															
YES1	7525	MSKCC	GRCh37	18	724579	724579	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	431	654	54	ENST00000314574.4:c.1477T>C	p.Cys493Arg	p.C493R	ENST00000314574	NM_005433.3	493	Tgc/Cgc																																																																															
APC	324	MSKCC	GRCh37	5	112178879	112178879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	209	405	1	ENST00000257430.4:c.7588C>T	p.Arg2530Trp	p.R2530W	ENST00000257430	NM_000038.5	2530	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	299	781	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
AR	367	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	194	289	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532517	63532517	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	313	843	0	ENST00000307078.5:c.2062delC	p.Leu688Ter	p.L688*	ENST00000307078	NM_004655.3	688	Ctg/tg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180039609	180039609	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	256	816	0	ENST00000261937.6:c.3434G>A	p.Arg1145His	p.R1145H	ENST00000261937	NM_182925.4	1145	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	261	621	1	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	76	897	5	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																															
POLE	5426	MSKCC	GRCh37	12	133244133	133244133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	284	717	1	ENST00000320574.5:c.2275C>T	p.Arg759Cys	p.R759C	ENST00000320574	NM_006231.2	759	Cgt/Tgt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11206807	11206807	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202187935		P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	323	757	1	ENST00000361445.4:c.4612C>T	p.Arg1538Trp	p.R1538W	ENST00000361445	NM_004958.3	1538	Cgg/Tgg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991757	72991758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	213	421	1	ENST00000268489.5:c.2287dupG	p.Glu763GlyfsTer26	p.E763Gfs*26	ENST00000268489	NM_006885.3	763	gag/gGag																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549230	21549230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113238499		P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	426	1083	4	ENST00000382592.4:c.3046G>A	p.Glu1016Lys	p.E1016K	ENST00000382592	NM_014572.2	1016	Gaa/Aaa																																																																															
MYD88	4615	MSKCC	GRCh37	3	38182749	38182749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	66	706	0	ENST00000396334.3:c.902G>A	p.Arg301His	p.R301H	ENST00000396334	NM_002468.4	301	cGc/cAc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	354	774	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	135	965	2	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	236	646	5	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249857	110249857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	96	759	3	ENST00000374672.4:c.818C>T	p.Thr273Met	p.T273M	ENST00000374672	NM_004235.4	273	aCg/aTg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12447396	12447396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	288	628	1	ENST00000287820.6:c.635G>A	p.Arg212Gln	p.R212Q	ENST00000287820	NM_015869.4	212	cGg/cAg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11217350	11217350	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	77	634	0	ENST00000361445.4:c.4330-2A>C		p.X1444_splice	ENST00000361445	NM_004958.3	1444																																																																																
SPEN	23013	MSKCC	GRCh37	1	16262753	16262753	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	49	428	0	ENST00000375759.3:c.10018G>T	p.Ala3340Ser	p.A3340S	ENST00000375759	NM_015001.2	3340	Gct/Tct																																																																															
SPEN	23013	MSKCC	GRCh37	1	16264114	16264114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	68	831	0	ENST00000375759.3:c.10483C>T	p.Pro3495Ser	p.P3495S	ENST00000375759	NM_015001.2	3495	Ccc/Tcc																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439771	51439771	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	161	350	0	ENST00000262662.1:c.336A>C	p.Lys112Asn	p.K112N	ENST00000262662		112	aaA/aaC																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846235	156846235	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201564883		P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	269	762	1	ENST00000524377.1:c.1676G>A	p.Arg559His	p.R559H	ENST00000524377	NM_002529.3	559	cGt/cAt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949100	71949100	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	57	645	1	ENST00000298229.2:c.3567G>T	p.Gln1189His	p.Q1189H	ENST00000298229	NM_001567.3	1189	caG/caT																																																																															
ATM	472	MSKCC	GRCh37	11	108201111	108201111	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	65	456	0	ENST00000278616.4:c.7478A>G	p.Glu2493Gly	p.E2493G	ENST00000278616	NM_000051.3	2493	gAa/gGa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953539	32953539	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	222	576	0	ENST00000380152.3:c.8842delA	p.Ile2948LeufsTer28	p.I2948Lfs*28	ENST00000380152		2947	gAa/ga																																																																															
MGA	23269	MSKCC	GRCh37	15	42058412	42058412	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	58	539	0	ENST00000219905.7:c.8132T>C	p.Val2711Ala	p.V2711A	ENST00000219905	NM_001164273.1	2711	gTg/gCg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43714075	43714075	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs773155828		P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	338	794	0	ENST00000382044.4:c.4078C>T	p.Arg1360Ter	p.R1360*	ENST00000382044	NM_001141980.1	1360	Cga/Tga																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472537	88472537	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	162	724	0	ENST00000360948.2:c.2018A>G	p.Gln673Arg	p.Q673R	ENST00000360948	NM_001012338.2	673	cAg/cGg																																																																															
BLM	641	MSKCC	GRCh37	15	91295140	91295140	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	50	513	0	ENST00000355112.3:c.923T>G	p.Ile308Ser	p.I308S	ENST00000355112	NM_000057.2	308	aTt/aGt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789688	3789688	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	41	579	0	ENST00000262367.5:c.4171T>C	p.Tyr1391His	p.Y1391H	ENST00000262367	NM_004380.2	1391	Tat/Cat																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862737	9862737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	249	566	0	ENST00000330684.3:c.2566C>T	p.Arg856Trp	p.R856W	ENST00000330684	NM_001134407.1	856	Cgg/Tgg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56870517	56870517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	205	422	0	ENST00000308159.5:c.1787G>A	p.Gly596Glu	p.G596E	ENST00000308159	NM_014669.4	596	gGa/gAa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1625629	1625629	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	334	1116	0	ENST00000344749.5:c.445T>C	p.Tyr149His	p.Y149H	ENST00000344749	NM_001136139.2	149	Tac/Cac																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10259560	10259560	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	71	741	0	ENST00000340748.4:c.2672A>G	p.Lys891Arg	p.K891R	ENST00000340748		891	aAa/aGa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599936	10599936	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	83	894	0	ENST00000171111.5:c.1640T>C	p.Val547Ala	p.V547A	ENST00000171111	NM_203500.1	547	gTa/gCa																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17387338	17387338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	354	1021	0	ENST00000359435.4:c.604G>A	p.Val202Met	p.V202M	ENST00000359435	NM_001033549.1	202	Gtg/Atg																																																																															
CIC	23152	MSKCC	GRCh37	19	42793223	42793223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	337	890	0	ENST00000575354.2:c.1115C>T	p.Ala372Val	p.A372V	ENST00000575354	NM_015125.3	372	gCg/gTg																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868418	45868418	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	86	765	0	ENST00000391945.4:c.361-2A>G		p.X121_splice	ENST00000391945	NM_000400.3	121																																																																																
PPP2R1A	5518	MSKCC	GRCh37	19	52714643	52714643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	306	793	1	ENST00000322088.6:c.401G>A	p.Arg134Gln	p.R134Q	ENST00000322088	NM_014225.5	134	cGg/cAg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26022394	26022394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	80	576	0	ENST00000435504.4:c.263C>T	p.Pro88Leu	p.P88L	ENST00000435504		88	cCg/cTg																																																																															
REL	5966	MSKCC	GRCh37	2	61149666	61149666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	16	178	0	ENST00000295025.8:c.1856T>C	p.Val619Ala	p.V619A	ENST00000295025	NM_002908.2	619	gTa/gCa																																																																															
CUL3	8452	MSKCC	GRCh37	2	225339039	225339039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	93	582	0	ENST00000264414.4:c.2230C>T	p.Arg744Cys	p.R744C	ENST00000264414	NM_003590.4	744	Cgt/Tgt																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62326202	62326202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	307	912	3	ENST00000508582.2:c.3290C>T	p.Ser1097Phe	p.S1097F	ENST00000508582		1097	tCc/tTc																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45656975	45656975	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	117	939	0	ENST00000407780.3:c.181A>C	p.Thr61Pro	p.T61P	ENST00000407780	NM_001283052.1	61	Acc/Ccc																																																																															
EP300	2033	MSKCC	GRCh37	22	41573329	41573329	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	55	985	0	ENST00000263253.7:c.5614A>G	p.Thr1872Ala	p.T1872A	ENST00000263253	NM_001429.3	1872	Act/Gct																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645660	12645660	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	33	242	0	ENST00000251849.4:c.809T>C	p.Leu270Pro	p.L270P	ENST00000251849	NM_002880.3	270	cTg/cCg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940409	49940409	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	41	780	0	ENST00000296474.3:c.634A>G	p.Ser212Gly	p.S212G	ENST00000296474	NM_002447.2	212	Agc/Ggc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440372	52440372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	110	665	3	ENST00000460680.1:c.680G>A	p.Arg227His	p.R227H	ENST00000460680	NM_004656.3	227	cGc/cAc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751533	57751533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	238	427	0	ENST00000274289.3:c.1458G>A	p.Met486Ile	p.M486I	ENST00000274289	NM_006622.3	486	atG/atA																																																																															
APC	324	MSKCC	GRCh37	5	112174392	112174392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	51	234	0	ENST00000257430.4:c.3101A>G	p.Glu1034Gly	p.E1034G	ENST00000257430	NM_000038.5	1034	gAg/gGg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32189104	32189104	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	42	447	0	ENST00000375023.3:c.452-2A>G		p.X151_splice	ENST00000375023	NM_004557.3	151																																																																																
EPHA7	2045	MSKCC	GRCh37	6	94120400	94120400	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	203	346	0	ENST00000369303.4:c.651T>A	p.Asp217Glu	p.D217E	ENST00000369303	NM_004440.3	217	gaT/gaA																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553714	106553714	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	71	493	0	ENST00000369096.4:c.1679A>G	p.Lys560Arg	p.K560R	ENST00000369096	NM_001198.3	560	aAg/aGg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099473	157099473	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	156	482	0	ENST00000346085.5:c.410A>T	p.Asn137Ile	p.N137I	ENST00000346085	NM_020732.3	137	aAc/aTc																																																																															
MET	4233	MSKCC	GRCh37	7	116395451	116395451	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	269	581	0	ENST00000397752.3:c.1744A>G	p.Thr582Ala	p.T582A	ENST00000397752	NM_000245.2	582	Acc/Gcc																																																																															
SMO	6608	MSKCC	GRCh37	7	128849177	128849177	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	95	832	0	ENST00000249373.3:c.1405T>C	p.Cys469Arg	p.C469R	ENST00000249373	NM_005631.4	469	Tgc/Cgc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141568626	141568626	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	82	826	0	ENST00000220592.5:c.836A>G	p.Tyr279Cys	p.Y279C	ENST00000220592	NM_012154.3	279	tAc/tGc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5069097	5069099	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs1371743120		P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	242	470	1	ENST00000381652.3:c.1407_1409del	p.Lys469del	p.K469del	ENST00000381652	NM_004972.3	468	AAG/-																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127915900	127915900	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	90	635	0	ENST00000373547.4:c.581T>A	p.Leu194Gln	p.L194Q	ENST00000373547	NM_002721.4	194	cTg/cAg																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127915910	127915910	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	79	637	0	ENST00000373547.4:c.571T>C	p.Phe191Leu	p.F191L	ENST00000373547	NM_002721.4	191	Ttt/Ctt																																																																															
ABL1	25	MSKCC	GRCh37	9	133729579	133729579	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1136	78	716	0	ENST00000318560.5:c.208T>C	p.Tyr70His	p.Y70H	ENST00000318560	NM_005157.4	70	Tat/Cat																																																																															
ABL1	25	MSKCC	GRCh37	9	133730449	133730449	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	53	497	0	ENST00000318560.5:c.515A>G	p.Tyr172Cys	p.Y172C	ENST00000318560	NM_005157.4	172	tAc/tGc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417577	139417577	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	303	1177	0	ENST00000277541.6:c.467T>C	p.Leu156Pro	p.L156P	ENST00000277541	NM_017617.3	156	cTg/cCg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123195619	123195619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	78	72	0	ENST00000218089.9:c.1535-2A>G		p.X512_splice	ENST00000218089	NM_001042749.1	512																																																																																
STAG2	10735	MSKCC	GRCh37	X	123195621	123195621	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	83	86	0	ENST00000218089.9:c.1535C>A	p.Ala512Glu	p.A512E	ENST00000218089	NM_001042749.1	512	gCa/gAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0024664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	104	578	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0024664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	26	400	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
EZH1	2145	MSKCC	GRCh37	17	40864438	40864438	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139326526		P-0024664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	34	916	2	ENST00000428826.2:c.1270G>A	p.Val424Ile	p.V424I	ENST00000428826		424	Gta/Ata																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118390402	118390407	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCCA	GTGCCA	CT			P-0024664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	30	600	1	ENST00000534358.1:c.11216_11221delinsCT	p.Gly3739AlafsTer22	p.G3739Afs*22	ENST00000534358	NM_005933.3	3739	gGTGCCAag/gCTag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270147	66270147	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	20	431	1	ENST00000273854.3:c.1735G>T	p.Val579Leu	p.V579L	ENST00000273854	NM_004439.5	579	Gtg/Ttg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245462	153245462	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	62	680	0	ENST00000281708.4:c.1729T>G	p.Leu577Val	p.L577V	ENST00000281708	NM_033632.3	577	Tta/Gta																																																																															
APC	324	MSKCC	GRCh37	5	112175171	112175172	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	20	239	0	ENST00000257430.4:c.3881dup	p.Glu1295GlyfsTer6	p.E1295Gfs*6	ENST00000257430	NM_000038.5	1294	cag/cAag																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468061	50468061	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	10	416	0	ENST00000331340.3:c.1296C>G	p.His432Gln	p.H432Q	ENST00000331340	NM_006060.4	432	caC/caG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	364	573	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579534	7579535	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0024666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	439	623	0	ENST00000269305.4:c.152_153del	p.Glu51AlafsTer5	p.E51Afs*5	ENST00000269305	NM_001126112.2	51	gAA/g																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440543	49440543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	942	647	0	ENST00000301067.7:c.4267C>T	p.Arg1423Cys	p.R1423C	ENST00000301067	NM_003482.3	1423	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	209	743	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	226	438	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65307188	65307188	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	132	640	1	ENST00000342505.4:c.2500C>T	p.Gln834Ter	p.Q834*	ENST00000342505	NM_002227.2	834	Cag/Tag																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871865	12871865	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	94	285	0	ENST00000228872.4:c.583del	p.Arg195AspfsTer30	p.R195Dfs*30	ENST00000228872	NM_004064.3	194	agA/ag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43730585	43730585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	113	636	0	ENST00000382044.4:c.3128G>A	p.Cys1043Tyr	p.C1043Y	ENST00000382044	NM_001141980.1	1043	tGt/tAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581171	48581171	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0024729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	131	426	2	ENST00000342988.3:c.475A>T	p.Lys159Ter	p.K159*	ENST00000342988	NM_005359.5	159	Aag/Tag																																																																															
MALT1	10892	MSKCC	GRCh37	18	56411723	56411723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	14	545	3	ENST00000348428.3:c.1907C>T	p.Pro636Leu	p.P636L	ENST00000348428	NM_006785.3	636	cCa/cTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419834	41419834	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0024729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	75	441	0	ENST00000373198.4:c.486+1G>A		p.X162_splice	ENST00000373198	NM_133170.3	162																																																																																
HIST1H3B	8358	MSKCC	GRCh37	6	26032034	26032034	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	182	434	0	ENST00000244661.2:c.255C>A	p.Phe85Leu	p.F85L	ENST00000244661	NM_003537.3	85	ttC/ttA																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627780	14627781	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0024730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	123	609	0	ENST00000254322.2:c.289_290del	p.Asp97ProfsTer7	p.D97Pfs*7	ENST00000254322	NM_006145.1	97	GAc/c																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177457	56177457	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	125	398	0	ENST00000399503.3:c.2431del	p.Met811TrpfsTer11	p.M811Wfs*11	ENST00000399503	NM_005921.1	810	tcA/tc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	191	479	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0024765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	177	535	2	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	295	637	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																															
MGA	23269	MSKCC	GRCh37	15	42052632	42052632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	183	524	2	ENST00000219905.7:c.7303C>T	p.Arg2435Trp	p.R2435W	ENST00000219905	NM_001164273.1	2435	Cgg/Tgg																																																																															
ETV6	2120	MSKCC	GRCh37	12	12037403	12037403	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	245	623	0	ENST00000396373.4:c.1034T>C	p.Val345Ala	p.V345A	ENST00000396373	NM_001987.4	345	gTc/gCc																																																																															
AR	367	MSKCC	GRCh37	X	66766444	66766444	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	25	327	0	ENST00000374690.3:c.1456C>A	p.Pro486Thr	p.P486T	ENST00000374690	NM_000044.3	486	Ccc/Acc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	49	474	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	47	472	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	94	466	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0024768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	61	298	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0024768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	84	553	4	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																															
ATRX	546	MSKCC	GRCh37	X	76829788	76829788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	55	254	0	ENST00000373344.5:c.6253C>T	p.Arg2085Cys	p.R2085C	ENST00000373344	NM_000489.3	2085	Cgt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832068	72832073	+	inframe_deletion	In_Frame_Del	DEL	GGCTCT	GGCTCT	-			P-0024768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	71	433	0	ENST00000268489.5:c.4508_4513del	p.Gln1503_Ser1504del	p.Q1503_S1504del	ENST00000268489	NM_006885.3	1503	cAGAGCCca/cca																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78519586	78519586	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	40	321	0	ENST00000306801.3:c.157G>T	p.Asp53Tyr	p.D53Y	ENST00000306801	NM_020761.2	53	Gat/Tat																																																																															
ATR	545	MSKCC	GRCh37	3	142281237	142281237	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	41	431	0	ENST00000350721.4:c.1007G>T	p.Arg336Leu	p.R336L	ENST00000350721	NM_001184.3	336	cGg/cTg																																																																															
APC	324	MSKCC	GRCh37	5	112174223	112174223	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	49	346	0	ENST00000257430.4:c.2932del	p.Gln978LysfsTer2	p.Q978Kfs*2	ENST00000257430	NM_000038.5	978	Caa/aa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444317	50444317	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	51	278	0	ENST00000331340.3:c.247C>T	p.Arg83Ter	p.R83*	ENST00000331340	NM_006060.4	83	Cga/Tga																																																																															
CDH1	999	MSKCC	GRCh37	16	68835794	68835794	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0024773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	141	523	1	ENST00000261769.5:c.385C>T	p.Gln129Ter	p.Q129*	ENST00000261769	NM_004360.3	129	Cag/Tag																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111884834	111884834	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs181079548		P-0024773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	27	413	2	ENST00000341259.2:c.923G>A	p.Arg308Gln	p.R308Q	ENST00000341259	NM_005475.2	308	cGa/cAa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs121913370		P-0024775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	63	340	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25462022	25462022	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	186	604	1	ENST00000264709.3:c.2385G>T	p.Trp795Cys	p.W795C	ENST00000264709	NM_175629.2	795	tgG/tgT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs878854073		P-0024775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	132	520	1	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
TP63	8626	MSKCC	GRCh37	3	189526161	189526161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	217	615	0	ENST00000264731.3:c.425G>A	p.Ser142Asn	p.S142N	ENST00000264731	NM_003722.4	142	aGc/aAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0024775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	151	750	0	ENST00000304494.5:c.457G>T	p.Asp153Tyr	p.D153Y	ENST00000304494	NM_000077.4	153	Gac/Tac																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589841	69589841	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	10	79	0	ENST00000168712.1:c.12del	p.Thr6ArgfsTer4	p.T6Rfs*4	ENST00000168712	NM_002007.2	4	ccC/cc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347353	89347353	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	209	713	1	ENST00000301030.4:c.5597A>T	p.His1866Leu	p.H1866L	ENST00000301030	NM_001256183.1	1866	cAc/cTc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212989502	212989502	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	67	445	1	ENST00000342788.4:c.209A>T	p.His70Leu	p.H70L	ENST00000342788	NM_005235.2	70	cAc/cTc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023946	31023946	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	160	579	0	ENST00000375687.4:c.3431A>G	p.His1144Arg	p.H1144R	ENST00000375687	NM_015338.5	1144	cAt/cGt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851759	134851759	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	116	558	0	ENST00000398015.3:c.1165T>A	p.Cys389Ser	p.C389S	ENST00000398015	NM_004441.4	389	Tgc/Agc																																																																															
SDHA	6389	MSKCC	GRCh37	5	224590	224590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	151	553	1	ENST00000264932.6:c.266G>T	p.Cys89Phe	p.C89F	ENST00000264932	NM_004168.2	89	tGt/tTt																																																																															
BTK	695	MSKCC	GRCh37	X	100617629	100617629	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	157	745	0	ENST00000308731.7:c.440G>T	p.Trp147Leu	p.W147L	ENST00000308731	NM_000061.2	147	tGg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0024777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	196	537	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641295	23641295	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	76	530	1	ENST00000261584.4:c.2180C>A	p.Ala727Asp	p.A727D	ENST00000261584	NM_024675.3	727	gCt/gAt																																																																															
TET2	54790	MSKCC	GRCh37	4	106157809	106157809	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	40	270	0	ENST00000380013.4:c.2710C>A	p.Gln904Lys	p.Q904K	ENST00000380013	NM_001127208.2	904	Caa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112176390	112176390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	37	227	0	ENST00000257430.4:c.5099C>A	p.Ala1700Asp	p.A1700D	ENST00000257430	NM_000038.5	1700	gCt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112179129	112179129	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	35	272	2	ENST00000257430.4:c.7838G>T	p.Arg2613Ile	p.R2613I	ENST00000257430	NM_000038.5	2613	aGa/aTa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266481	41266481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	190	400	0	ENST00000349496.5:c.278G>A	p.Arg93Lys	p.R93K	ENST00000349496	NM_001904.3	93	aGg/aAg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260483	16260483	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	164	332	0	ENST00000375759.3:c.7749del	p.Glu2584LysfsTer7	p.E2584Kfs*7	ENST00000375759	NM_015001.2	2583	gAa/ga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115920	8115920	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	410	363	0	ENST00000346208.3:c.1266del	p.Met422IlefsTer53	p.M422Ifs*53	ENST00000346208		422	atG/at																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572583	64572583	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	236	587	0	ENST00000337652.1:c.1288G>T	p.Glu430Ter	p.E430*	ENST00000337652	NM_130803.2	430	Gag/Tag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011115	12011115	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			11	242	423	0	ENST00000353533.5:c.522T>A	p.Cys174Ter	p.C174*	ENST00000353533	NM_003010.3	174	tgT/tgA																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20153856	20153857	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0024796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	252	402	0	ENST00000379607.5:c.203dup	p.Val69GlyfsTer19	p.V69Gfs*19	ENST00000379607	NM_001412.3	68	aag/aaAg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023598	31023598	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200702600		P-0024822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	186	612	2	ENST00000375687.4:c.3083C>T	p.Ser1028Leu	p.S1028L	ENST00000375687	NM_015338.5	1028	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0024822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	326	687	2	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602767	10602767	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	1306	937	0	ENST00000171111.5:c.811G>C	p.Val271Leu	p.V271L	ENST00000171111	NM_203500.1	271	Gtg/Ctg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36208923	36208925	+	start_lost,inframe_deletion	Translation_Start_Site	DEL	GGC	GGC	-			P-0024822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	10	36	0	ENST00000222270.7:c.14_16del	p.Ala5del	p.A5del	ENST00000222270	NM_014727.1	1	atGGCg/atg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432129	49432129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1440	340	803	0	ENST00000301067.7:c.9010G>A	p.Glu3004Lys	p.E3004K	ENST00000301067	NM_003482.3	3004	Gag/Aag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821626	+	inframe_deletion	In_Frame_Del	DEL	GCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCC	GCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCC	-			P-0024822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	24	137	0	ENST00000268489.5:c.10549_10581delGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGC	p.Gly3517_Gly3527del	p.G3517_G3527del	ENST00000268489	NM_006885.3	3517	GGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGC/-																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81972490	81972490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	293	555	0	ENST00000359376.3:c.3283G>T	p.Asp1095Tyr	p.D1095Y	ENST00000359376	NM_002661.3	1095	Gac/Tac																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10266621	10266621	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0024822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	49	538	0	ENST00000340748.4:c.1352G>T	p.Gly451Val	p.G451V	ENST00000340748		451	gGt/gTt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26029204	26029204	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	26	389	0	ENST00000435504.4:c.146G>A	p.Gly49Glu	p.G49E	ENST00000435504		49	gGg/gAg																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114184	73114184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	135	529	0	ENST00000356692.5:c.820G>A	p.Gly274Arg	p.G274R	ENST00000356692		274	Gga/Aga																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146582	185146582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	248	597	0	ENST00000265026.3:c.213C>A	p.Ser71Arg	p.S71R	ENST00000265026	NM_004721.4	71	agC/agA																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0024823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	144	810	3	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112174152	112174152	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	43	427	0	ENST00000257430.4:c.2861T>A	p.Leu954Ter	p.L954*	ENST00000257430	NM_000038.5	954	tTa/tAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	186	840	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579390	7579393	+	frameshift_variant	Frame_Shift_Del	DEL	GGAA	GGAA	-			P-0024823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	106	788	1	ENST00000269305.4:c.294_297delTTCC	p.Ser99ArgfsTer23	p.S99Rfs*23	ENST00000269305	NM_001126112.2	98	ccTTCC/cc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216505	2216505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	100	867	1	ENST00000398665.3:c.2149G>A	p.Ala717Thr	p.A717T	ENST00000398665	NM_032482.2	717	Gct/Act																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138426007	138426007	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	58	581	0	ENST00000289153.2:c.1524C>A	p.Phe508Leu	p.F508L	ENST00000289153	NM_006219.2	508	ttC/ttA																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185161347	185161347	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	86	731	0	ENST00000265026.3:c.774C>G	p.Asp258Glu	p.D258E	ENST00000265026	NM_004721.4	258	gaC/gaG																																																																															
APC	324	MSKCC	GRCh37	5	112174179	112174179	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	50	461	0	ENST00000257430.4:c.2888G>C	p.Ser963Thr	p.S963T	ENST00000257430	NM_000038.5	963	aGt/aCt																																																																															
APC	324	MSKCC	GRCh37	5	112175620	112175621	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAAACAGC			P-0024823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	74	349	0	ENST00000257430.4:c.4330_4337dup	p.Gln1447LysfsTer29	p.Q1447Kfs*29	ENST00000257430	NM_000038.5	1443	-/CAAACAGC																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	84	430	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419986	41419986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	46	425	1	ENST00000373198.4:c.335G>A	p.Arg112His	p.R112H	ENST00000373198	NM_133170.3	112	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	48	192	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0024824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	34	356	2	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98244444	98244444	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	61	499	0	ENST00000331920.6:c.626T>G	p.Leu209Arg	p.L209R	ENST00000331920	NM_000264.3	209	cTt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	122	476	0	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246481	105246481	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	92	539	0	ENST00000349310.3:c.119A>C	p.Glu40Ala	p.E40A	ENST00000349310	NM_001014432.1	40	gAg/gCg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575696	48575696	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0024824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	136	553	1	ENST00000342988.3:c.454+2T>A		p.X152_splice	ENST00000342988	NM_005359.5	152																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11123704	11123704	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	137	460	0	ENST00000344626.4:c.2354A>C	p.Lys785Thr	p.K785T	ENST00000344626	NM_003072.3	785	aAg/aCg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485449	57485449	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	56	275	0	ENST00000371085.3:c.1031A>C	p.Glu344Ala	p.E344A	ENST00000371085	NM_000516.4	344	gAg/gCg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131925501	131925501	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	75	304	0	ENST00000265335.6:c.1424T>G	p.Leu475Arg	p.L475R	ENST00000265335		475	cTt/cGt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509250	106509250	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	66	449	0	ENST00000359195.3:c.1244A>G	p.Glu415Gly	p.E415G	ENST00000359195	NM_002649.2	415	gAg/gGg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720876	89720876	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0024876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	107	370	0	ENST00000371953.3:c.1026+1G>T		p.X342_splice	ENST00000371953	NM_000314.4	342																																																																																
PTCH1	5727	MSKCC	GRCh37	9	98209504	98209504	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766315655		P-0024876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	41	554	1	ENST00000331920.6:c.4034G>A	p.Arg1345His	p.R1345H	ENST00000331920	NM_000264.3	1345	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0024876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	77	538	0	ENST00000269305.4:c.673-2A>C		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
MRE11A	4361	MSKCC	GRCh37	11	94203704	94203704	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	33	374	0	ENST00000323929.3:c.950A>T	p.His317Leu	p.H317L	ENST00000323929	NM_005591.3	317	cAt/cTt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912264	32912264	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	85	523	0	ENST00000380152.3:c.3772A>G	p.Ile1258Val	p.I1258V	ENST00000380152		1258	Ata/Gta																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121783	2121783	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0024876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	121	655	0	ENST00000219476.3:c.1947-2A>T		p.X649_splice	ENST00000219476	NM_000548.3	649																																																																																
TGFBR2	7048	MSKCC	GRCh37	3	30715673	30715673	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	30	333	1	ENST00000359013.4:c.1406A>T	p.Gln469Leu	p.Q469L	ENST00000359013	NM_001024847.2	469	cAg/cTg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169993053	169993053	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	98	478	0	ENST00000295797.4:c.683A>G	p.Asp228Gly	p.D228G	ENST00000295797	NM_002740.5	228	gAt/gGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557391	187557391	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0024876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	87	340	0	ENST00000441802.2:c.3973-2A>T		p.X1325_splice	ENST00000441802	NM_005245.3	1325																																																																																
LATS1	9113	MSKCC	GRCh37	6	150001028	150001028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	32	393	0	ENST00000253339.5:c.2576C>T	p.Ser859Phe	p.S859F	ENST00000253339		859	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	143	775	0	ENST00000269305.4:c.395A>C	p.Lys132Thr	p.K132T	ENST00000269305	NM_001126112.2	132	aAg/aCg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73347917	73347917	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	8	373	1	ENST00000377767.4:c.1144C>T	p.Arg382Ter	p.R382*	ENST00000377767	NM_014953.3	382	Cga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115903	8115904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	229	532	0	ENST00000346208.3:c.1251dupC	p.Thr418HisfsTer89	p.T418Hfs*89	ENST00000346208		417	acc/aCcc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56490377	56490377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	126	469	1	ENST00000267101.3:c.2146G>T	p.Gly716Cys	p.G716C	ENST00000267101	NM_001982.3	716	Ggc/Tgc																																																																															
GNA11	2767	MSKCC	GRCh37	19	3121152	3121152	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	37	619	0	ENST00000078429.4:c.1055A>G	p.Asn352Ser	p.N352S	ENST00000078429	NM_002067.2	352	aAc/aGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55219010	55219010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	25	481	0	ENST00000275493.2:c.583C>T	p.Pro195Ser	p.P195S	ENST00000275493	NM_005228.3	195	Ccc/Tcc																																																																															
TEK	7010	MSKCC	GRCh37	9	27168535	27168535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	133	726	0	ENST00000380036.4:c.407G>A	p.Gly136Glu	p.G136E	ENST00000380036	NM_000459.3	136	gGa/gAa																																																																															
TEK	7010	MSKCC	GRCh37	9	27168582	27168582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	129	731	0	ENST00000380036.4:c.454G>A	p.Asp152Asn	p.D152N	ENST00000380036	NM_000459.3	152	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0024892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	131	630	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249029	55249029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	8	507	1	ENST00000275493.2:c.2327G>T	p.Arg776Leu	p.R776L	ENST00000275493	NM_005228.3	776	cGc/cTc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	58	560	2	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174484	112174484	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	67	261	1	ENST00000257430.4:c.3193C>T	p.Gln1065Ter	p.Q1065*	ENST00000257430	NM_000038.5	1065	Caa/Taa																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119823	70119823	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	143	688	0	ENST00000245479.2:c.825del	p.Ile275MetfsTer4	p.I275Mfs*4	ENST00000245479	NM_000346.3	275	atC/at																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692988	89692988	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	28	443	0	ENST00000371953.3:c.472G>C	p.Val158Leu	p.V158L	ENST00000371953	NM_000314.4	158	Gta/Cta																																																																															
MGA	23269	MSKCC	GRCh37	15	42052635	42052635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	61	526	1	ENST00000219905.7:c.7306C>T	p.Arg2436Cys	p.R2436C	ENST00000219905	NM_001164273.1	2436	Cgt/Tgt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740695	58740696	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0024892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	37	504	0	ENST00000305921.3:c.1601_1602del	p.Phe534Ter	p.F534*	ENST00000305921	NM_003620.3	534	TTt/t																																																																															
INSR	3643	MSKCC	GRCh37	19	7125428	7125428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	125	797	0	ENST00000302850.5:c.3124G>T	p.Ala1042Ser	p.A1042S	ENST00000302850	NM_000208.2	1042	Gcc/Tcc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10252867	10252867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	116	539	0	ENST00000340748.4:c.3098C>T	p.Ala1033Val	p.A1033V	ENST00000340748		1033	gCg/gTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212495321	212495321	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0024892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	19	434	1	ENST00000342788.4:c.1947-2A>G		p.X649_splice	ENST00000342788	NM_005235.2	649																																																																																
PTEN	5728	MSKCC	GRCh37	10	89711927	89711928	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	41	556	0	ENST00000371953.3:c.548dup	p.Asn184GlufsTer6	p.N184Efs*6	ENST00000371953	NM_000314.4	182	tta/ttAa																																																																															
BLM	641	MSKCC	GRCh37	15	91354442	91354442	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	25	408	0	ENST00000355112.3:c.3882C>G	p.Asp1294Glu	p.D1294E	ENST00000355112	NM_000057.2	1294	gaC/gaG																																																																															
JAK2	3717	MSKCC	GRCh37	9	5022061	5022061	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	34	696	0	ENST00000381652.3:c.76del	p.Ser26LeufsTer7	p.S26Lfs*7	ENST00000381652	NM_004972.3	25	aTt/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	92	500	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484780	57484780	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	67	457	0	ENST00000371085.3:c.760A>G	p.Asn254Asp	p.N254D	ENST00000371085	NM_000516.4	254	Aac/Gac																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933576	39933579	+	frameshift_variant	Frame_Shift_Del	DEL	GGGT	GGGT	-			P-0025008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	94	432	0	ENST00000378444.4:c.1020_1023del	p.Pro341GlufsTer36	p.P341Efs*36	ENST00000378444	NM_001123385.1	340	tcACCC/tc																																																																															
AR	367	MSKCC	GRCh37	X	66931310	66931310	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	53	445	0	ENST00000374690.3:c.1952G>T	p.Ser651Ile	p.S651I	ENST00000374690	NM_000044.3	651	aGc/aTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	186	478	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0025016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	53	321	1	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576863	7576863	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	125	506	0	ENST00000269305.4:c.983del	p.Phe328SerfsTer17	p.F328Sfs*17	ENST00000269305	NM_001126112.2	328	tTc/tc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245316	46245316	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	104	316	0	ENST00000334344.6:c.3410C>A	p.Ser1137Ter	p.S1137*	ENST00000334344	NM_152641.2	1137	tCa/tAa																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599909	28599909	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1239081741		P-0025016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	41	378	1	ENST00000253063.3:c.791G>A	p.Arg264His	p.R264H	ENST00000253063	NM_031459.4	264	cGc/cAc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180585	94180585	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	68	332	0	ENST00000323929.3:c.1583C>G	p.Ala528Gly	p.A528G	ENST00000323929	NM_005591.3	528	gCa/gGa																																																																															
BIRC3	330	MSKCC	GRCh37	11	102207693	102207693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	131	330	1	ENST00000263464.3:c.1675G>T	p.Val559Leu	p.V559L	ENST00000263464	NM_001165.4	559	Gtg/Ttg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32950888	32950888	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	118	427	0	ENST00000380152.3:c.8714A>T	p.Tyr2905Phe	p.Y2905F	ENST00000380152		2905	tAt/tTt																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14024730	14024730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	111	334	0	ENST00000311895.7:c.956C>A	p.Ala319Asp	p.A319D	ENST00000311895	NM_005236.2	319	gCt/gAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29665090	29665100	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTTGGGTGT	TCTTTGGGTGT	-			P-0025016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	117	445	0	ENST00000358273.4:c.6752_6762del	p.Val2251AspfsTer2	p.V2251Dfs*2	ENST00000358273	NM_001042492.2	2251	gTCTTTGGGTGT/g																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610375	10610375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	98	467	0	ENST00000171111.5:c.335C>A	p.Thr112Asn	p.T112N	ENST00000171111	NM_203500.1	112	aCc/aAc																																																																															
REL	5966	MSKCC	GRCh37	2	61147711	61147711	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0025016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	110	290	0	ENST00000295025.8:c.1022del	p.Asn341IlefsTer33	p.N341Ifs*33	ENST00000295025	NM_002908.2	341	Aat/at																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198274706	198274706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	83	280	0	ENST00000335508.6:c.692G>A	p.Arg231Lys	p.R231K	ENST00000335508	NM_012433.2	231	aGa/aAa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38959350	38959350	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0025016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	133	422	0	ENST00000357387.3:c.2125A>T	p.Arg709Ter	p.R709*	ENST00000357387	NM_152756.3	709	Aga/Tga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405889	157405889	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	28	302	0	ENST00000346085.5:c.2131G>T	p.Asp711Tyr	p.D711Y	ENST00000346085	NM_020732.3	711	Gat/Tat																																																																															
RHEB	6009	MSKCC	GRCh37	7	151167739	151167739	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0025016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	37	263	0	ENST00000262187.5:c.381-1G>T		p.X127_splice	ENST00000262187	NM_005614.3	127																																																																																
SOX17	64321	MSKCC	GRCh37	8	55370727	55370727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	71	347	0	ENST00000297316.4:c.29G>A	p.Ser10Asn	p.S10N	ENST00000297316	NM_022454.3	10	aGt/aAt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68989697	68989697	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	41	409	0	ENST00000288368.4:c.1635G>T	p.Met545Ile	p.M545I	ENST00000288368	NM_024870.2	545	atG/atT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485834	8485834	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	65	276	0	ENST00000356435.5:c.2983C>A	p.Arg995Ser	p.R995S	ENST00000356435		995	Cgt/Agt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518141	8518141	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	68	319	0	ENST00000356435.5:c.1250C>A	p.Pro417Gln	p.P417Q	ENST00000356435		417	cCa/cAa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971024	21971024	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	65	307	0	ENST00000304494.5:c.334C>A	p.Arg112Ser	p.R112S	ENST00000304494	NM_000077.4	112	Cgt/Agt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861143	57861143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	342	563	0	ENST00000228682.2:c.940C>T	p.Arg314Cys	p.R314C	ENST00000228682	NM_005269.2	314	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0025044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	380	624	0	ENST00000269305.4:c.993+2T>G		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
HIST1H3A	8350	MSKCC	GRCh37	6	26021117	26021117	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	223	371	0	ENST00000357647.3:c.400G>C	p.Glu134Gln	p.E134Q	ENST00000357647	NM_003529.2	134	Gag/Cag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	228	730	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0025046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	100	425	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0025046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	237	778	2	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355121	15355121	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	35	736	0	ENST00000263377.2:c.2502G>C	p.Glu834Asp	p.E834D	ENST00000263377	NM_058243.2	834	gaG/gaC																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106514	27106514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	68	397	0	ENST00000324856.7:c.6125G>A	p.Ser2042Asn	p.S2042N	ENST00000324856	NM_006015.4	2042	aGc/aAc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	85	255	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838408	156838408	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	104	366	0	ENST00000524377.1:c.686T>C	p.Leu229Pro	p.L229P	ENST00000524377	NM_002529.3	229	cTc/cCc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163307849	163307849	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	92	296	0	ENST00000271452.3:c.475C>G	p.His159Asp	p.H159D	ENST00000271452	NM_145697.2	159	Cac/Gac																																																																															
NUF2	83540	MSKCC	GRCh37	1	163313577	163313577	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	30	331	0	ENST00000271452.3:c.724A>G	p.Thr242Ala	p.T242A	ENST00000271452	NM_145697.2	242	Aca/Gca																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	27	311	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																																																															
TET1	80312	MSKCC	GRCh37	10	70450787	70450787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	36	305	0	ENST00000373644.4:c.5627G>A	p.Ser1876Asn	p.S1876N	ENST00000373644	NM_030625.2	1876	aGc/aAc																																																																															
CCND1	595	MSKCC	GRCh37	11	69457951	69457951	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	14	277	0	ENST00000227507.2:c.355del	p.Leu119Ter	p.L119*	ENST00000227507	NM_053056.2	117	atC/at																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939522	71939522	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	30	420	0	ENST00000298229.2:c.377C>A	p.Pro126Gln	p.P126Q	ENST00000298229	NM_001567.3	126	cCg/cAg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94179003	94179003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	29	350	0	ENST00000323929.3:c.1840G>A	p.Ala614Thr	p.A614T	ENST00000323929	NM_005591.3	614	Gca/Aca																																																																															
PGR	5241	MSKCC	GRCh37	11	100912676	100912676	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	28	276	0	ENST00000325455.5:c.2646T>A	p.Asp882Glu	p.D882E	ENST00000325455	NM_001202474.3	882	gaT/gaA																																																																															
ATM	472	MSKCC	GRCh37	11	108114816	108114817	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	149	485	1	ENST00000278616.4:c.640dupT	p.Ser214PhefsTer40	p.S214Ffs*40	ENST00000278616	NM_000051.3	211	-/T																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344369	118344369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	23	216	0	ENST00000534358.1:c.2495C>T	p.Pro832Leu	p.P832L	ENST00000534358	NM_005933.3	832	cCt/cTt																																																																															
RAD52	5893	MSKCC	GRCh37	12	1036341	1036341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	43	374	1	ENST00000358495.3:c.437C>T	p.Ala146Val	p.A146V	ENST00000358495	NM_134424.2	146	gCg/gTg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21627877	21627877	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	157	548	0	ENST00000421138.2:c.1253A>G	p.Tyr418Cys	p.Y418C	ENST00000421138		418	tAc/tGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	151	505	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859434	57859434	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	23	391	0	ENST00000228682.2:c.579A>C	p.Glu193Asp	p.E193D	ENST00000228682	NM_005269.2	193	gaA/gaC																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953514	32953514	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	138	331	0	ENST00000380152.3:c.8815A>G	p.Lys2939Glu	p.K2939E	ENST00000380152		2939	Aag/Gag																																																																															
RB1	5925	MSKCC	GRCh37	13	48878069	48878069	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	20	160	0	ENST00000267163.4:c.25del	p.Thr9ArgfsTer56	p.T9Rfs*56	ENST00000267163	NM_000321.2	7	cgA/cg																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524683	103524683	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	36	310	0	ENST00000355739.4:c.2814A>C	p.Lys938Asn	p.K938N	ENST00000355739	NM_000123.3	938	aaA/aaC																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701932	43701933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	24	209	0	ENST00000382044.4:c.5312dup	p.Leu1771PhefsTer24	p.L1771Ffs*24	ENST00000382044	NM_001141980.1	1771	ttg/ttTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483932	88483932	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	133	425	1	ENST00000360948.2:c.1638G>T	p.Glu546Asp	p.E546D	ENST00000360948	NM_001012338.2	546	gaG/gaT																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631704	90631704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	59	354	0	ENST00000330062.3:c.565G>A	p.Ala189Thr	p.A189T	ENST00000330062	NM_002168.2	189	Gcc/Acc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778882	3778882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	30	282	0	ENST00000262367.5:c.6166G>A	p.Val2056Met	p.V2056M	ENST00000262367	NM_004380.2	2056	Gtg/Atg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67650720	67650720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	147	424	0	ENST00000264010.4:c.1025G>A	p.Arg342His	p.R342H	ENST00000264010	NM_006565.3	342	cGt/cAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830807	72830807	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	26	386	0	ENST00000268489.5:c.5774del	p.Gly1925ValfsTer72	p.G1925Vfs*72	ENST00000268489	NM_006885.3	1925	gGt/gt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15942828	15942828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	125	363	0	ENST00000268712.3:c.6874G>A	p.Val2292Ile	p.V2292I	ENST00000268712	NM_006311.3	2292	Gta/Ata																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15952280	15952280	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	38	359	0	ENST00000268712.3:c.6415A>G	p.Arg2139Gly	p.R2139G	ENST00000268712	NM_006311.3	2139	Agg/Ggg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983295	15983295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	129	357	0	ENST00000268712.3:c.3484C>T	p.Arg1162Trp	p.R1162W	ENST00000268712	NM_006311.3	1162	Cgg/Tgg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119725	17119725	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	90	288	0	ENST00000285071.4:c.1269del	p.His423GlnfsTer45	p.H423Qfs*45	ENST00000285071	NM_144997.5	423	caC/ca																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687228	37687228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	31	334	0	ENST00000447079.4:c.4132G>T	p.Gly1378Cys	p.G1378C	ENST00000447079	NM_015083.1	1378	Ggc/Tgc																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453399	40453399	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs759027671		P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	153	534	9	ENST00000345506.4:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000345506	NM_003152.3	366	Ccc/cc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	74	226	0	ENST00000307078.5:c.1214_1215delAG	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119978	70119978	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	11	140	0	ENST00000245479.2:c.983del	p.Pro328ArgfsTer55	p.P328Rfs*55	ENST00000245479	NM_000346.3	327	aCc/ac																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78923342	78923342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	81	255	0	ENST00000306801.3:c.3365C>T	p.Thr1122Met	p.T1122M	ENST00000306801	NM_020761.2	1122	aCg/aTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210583	5210583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	26	363	1	ENST00000357368.4:c.5384C>T	p.Pro1795Leu	p.P1795L	ENST00000357368	NM_002850.3	1795	cCg/cTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276729	15276729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	134	416	1	ENST00000263388.2:c.5536G>A	p.Ala1846Thr	p.A1846T	ENST00000263388	NM_000435.2	1846	Gct/Act																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290893	15290893	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	52	442	0	ENST00000263388.2:c.3317A>G	p.Tyr1106Cys	p.Y1106C	ENST00000263388	NM_000435.2	1106	tAc/tGc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15374311	15374311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	29	389	0	ENST00000263377.2:c.1261G>A	p.Asp421Asn	p.D421N	ENST00000263377	NM_058243.2	421	Gac/Aac																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273026	18273026	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	120	376	0	ENST00000222254.8:c.921delC	p.Lys308ArgfsTer33	p.K308Rfs*33	ENST00000222254	NM_005027.3	306	Ccc/cc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19258545	19258545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	25	401	0	ENST00000162023.5:c.355G>A	p.Glu119Lys	p.E119K	ENST00000162023		119	Gaa/Aaa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224734	36224735	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	129	477	1	ENST00000222270.7:c.7120_7121insA	p.Pro2374HisfsTer6	p.P2374Hfs*6	ENST00000222270	NM_014727.1	2374	cca/cAca																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	62	201	1	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50912080	50912080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	149	406	0	ENST00000440232.2:c.1814C>T	p.Ser605Leu	p.S605L	ENST00000440232	NM_002691.3	605	tCg/tTg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	107	375	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128030506	128030506	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	57	418	0	ENST00000285398.2:c.1762del	p.Glu588LysfsTer23	p.E588Kfs*23	ENST00000285398	NM_000122.1	588	Gaa/aa																																																																															
ACVR1	90	MSKCC	GRCh37	2	158617542	158617543	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	22	351	0	ENST00000263640.3:c.1113dup	p.Asn372GlufsTer18	p.N372Efs*18	ENST00000263640	NM_001105.4	371	-/G																																																																															
INHA	3623	MSKCC	GRCh37	2	220437288	220437288	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	124	420	0	ENST00000243786.2:c.197del	p.Gly66AlafsTer61	p.G66Afs*61	ENST00000243786	NM_002191.3	64	ctG/ct																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022358	31022358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	16	197	0	ENST00000375687.4:c.1843G>A	p.Ala615Thr	p.A615T	ENST00000375687	NM_015338.5	615	Gca/Aca																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385153	41385153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	134	409	0	ENST00000373198.4:c.808C>T	p.Arg270Cys	p.R270C	ENST00000373198	NM_133170.3	270	Cgc/Tgc																																																																															
RAF1	5894	MSKCC	GRCh37	3	12633207	12633207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	122	349	0	ENST00000251849.4:c.1193G>T	p.Arg398Leu	p.R398L	ENST00000251849	NM_002880.3	398	cGc/cTc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200691	128200691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	103	342	2	ENST00000341105.2:c.1114G>A	p.Ala372Thr	p.A372T	ENST00000341105	NM_032638.4	372	Gcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	111	304	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	88	309	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
BCL6	604	MSKCC	GRCh37	3	187451336	187451336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	86	253	0	ENST00000232014.4:c.146T>C	p.Val49Ala	p.V49A	ENST00000232014	NM_001130845.1	49	gTc/gCc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1920318	1920318	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	41	427	5	ENST00000382891.5:c.1382del	p.Leu461TrpfsTer12	p.L461Wfs*12	ENST00000382891	NM_133335.3	460	Ttt/tt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1955117	1955117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	60	436	1	ENST00000382891.5:c.2204G>A	p.Cys735Tyr	p.C735Y	ENST00000382891	NM_133335.3	735	tGt/tAt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55152018	55152018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs79948560		P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	128	338	0	ENST00000257290.5:c.2450G>A	p.Arg817His	p.R817H	ENST00000257290	NM_006206.4	817	cGt/cAt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187554836	187554836	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	20	232	0	ENST00000441802.2:c.4323+2T>C		p.X1441_splice	ENST00000441802	NM_005245.3	1441																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31449396	31449396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	44	353	0	ENST00000344624.3:c.2813G>A	p.Arg938Gln	p.R938Q	ENST00000344624		938	cGg/cAg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177039	56177039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	34	294	0	ENST00000399503.3:c.2309C>T	p.Ala770Val	p.A770V	ENST00000399503	NM_005921.1	770	gCt/gTt																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750808	57750808	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	48	346	0	ENST00000274289.3:c.1796G>T	p.Arg599Leu	p.R599L	ENST00000274289	NM_006622.3	599	cGg/cTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	83	458	10	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515217	149515217	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	83	391	0	ENST00000261799.4:c.265A>G	p.Asn89Asp	p.N89D	ENST00000261799	NM_002609.3	89	Aac/Gac																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046289	180046289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	23	294	0	ENST00000261937.6:c.2725G>A	p.Val909Met	p.V909M	ENST00000261937	NM_182925.4	909	Gtg/Atg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053023	180053023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	81	388	4	ENST00000261937.6:c.1267delC	p.Gln423ArgfsTer70	p.Q423Rfs*70	ENST00000261937	NM_182925.4	423	Cag/ag																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	150	234	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
STK19	8859	MSKCC	GRCh37	6	31946776	31946776	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	30	405	0	ENST00000375331.2:c.663+1G>T		p.X221_splice	ENST00000375331	NM_004197.1	221																																																																																
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	206	387	0	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																															
SESN1	27244	MSKCC	GRCh37	6	109309771	109309771	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	145	475	0	ENST00000436639.2:c.1544G>A	p.Trp515Ter	p.W515*	ENST00000436639	NM_014454.2	515	tGg/tAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151835931	151835931	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	111	378	0	ENST00000262189.6:c.14593G>T	p.Gly4865Ter	p.G4865*	ENST00000262189	NM_170606.2	4865	Gga/Tga																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891639	151891639	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	21	248	0	ENST00000262189.6:c.4393A>G	p.Thr1465Ala	p.T1465A	ENST00000262189	NM_170606.2	1465	Act/Gct																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346202	152346202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	46	367	0	ENST00000359321.1:c.368G>A	p.Ser123Asn	p.S123N	ENST00000359321	NM_005431.1	123	aGc/aAc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187222	38187222	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	45	526	3	ENST00000317025.8:c.1255del	p.Thr419ProfsTer8	p.T419Pfs*8	ENST00000317025	NM_023034.1	419	Acc/cc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	77	272	2	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741985	145741985	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	115	331	0	ENST00000428558.2:c.518A>G	p.Gln173Arg	p.Q173R	ENST00000428558	NM_004260.3	173	cAg/cGg																																																																															
TEK	7010	MSKCC	GRCh37	9	27212729	27212729	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	87	477	0	ENST00000380036.4:c.2711A>G	p.Tyr904Cys	p.Y904C	ENST00000380036	NM_000459.3	904	tAc/tGc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391896	139391896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	39	367	1	ENST00000277541.6:c.6295G>A	p.Asp2099Asn	p.D2099N	ENST00000277541	NM_017617.3	2099	Gac/Aac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139407473	139407473	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	52	373	0	ENST00000277541.6:c.2467G>T	p.Gly823Cys	p.G823C	ENST00000277541	NM_017617.3	823	Ggt/Tgt																																																																															
ARAF	369	MSKCC	GRCh37	X	47422384	47422384	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	89	154	0	ENST00000377045.4:c.23del	p.Pro8LeufsTer26	p.P8Lfs*26	ENST00000377045	NM_001654.4	6	ggC/gg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426420	47426420	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	50	193	0	ENST00000377045.4:c.763C>G	p.Arg255Gly	p.R255G	ENST00000377045	NM_001654.4	255	Cgg/Ggg																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652397	48652397	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	18	164	0	ENST00000376670.3:c.1073del	p.Pro358GlnfsTer74	p.P358Qfs*74	ENST00000376670	NM_002049.3	356	ggC/gg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	11	224	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																															
AR	367	MSKCC	GRCh37	X	66931518	66931519	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	100	189	0	ENST00000374690.3:c.2162dup	p.Ala722GlyfsTer47	p.A722Gfs*47	ENST00000374690	NM_000044.3	720	-/A																																																																															
BTK	695	MSKCC	GRCh37	X	100617162	100617162	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	12	209	0	ENST00000308731.7:c.587A>C	p.Gln196Pro	p.Q196P	ENST00000308731	NM_000061.2	196	cAg/cCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0025050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	29	461	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	122	763	3	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485288	8485288	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	192	629	0	ENST00000356435.5:c.3092A>C	p.Lys1031Thr	p.K1031T	ENST00000356435		1031	aAg/aCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763098116		P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	84	685	1	ENST00000269305.4:c.830G>A	p.Cys277Tyr	p.C277Y	ENST00000269305	NM_001126112.2	277	tGt/tAt																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926270	112926270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	185	666	0	ENST00000351677.2:c.1403C>T	p.Thr468Met	p.T468M	ENST00000351677	NM_002834.3	468	aCg/aTg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729399	41729399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	52	592	0	ENST00000242208.4:c.1130G>A	p.Arg377His	p.R377H	ENST00000242208	NM_002192.2	377	cGc/cAc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323991	31323991	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1050692		P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	10	116	1	ENST00000412585.2:c.572G>C	p.Trp191Ser	p.W191S	ENST00000412585	NM_005514.6	191	tGg/tCg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290896	15290896	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	255	808	0	ENST00000263388.2:c.3314delG	p.Gly1105AlafsTer167	p.G1105Afs*167	ENST00000263388	NM_000435.2	1105	gGc/gc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856545	111856545	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1157707616		P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	32	472	1	ENST00000341259.2:c.596C>T	p.Ala199Val	p.A199V	ENST00000341259	NM_005475.2	199	gCg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107186	27107219	+	frameshift_variant	Frame_Shift_Del	DEL	TGATGAACTCATTGGTTTCACAAGTCATTTGTGA	TGATGAACTCATTGGTTTCACAAGTCATTTGTGA	-			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	171	578	1	ENST00000324856.7:c.6799_6832del	p.Met2267TyrfsTer4	p.M2267Yfs*4	ENST00000324856	NM_006015.4	2266	tTGATGAACTCATTGGTTTCACAAGTCATTTGTGAt/tt																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46733215	46733215	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	209	713	0	ENST00000371975.4:c.976A>G	p.Thr326Ala	p.T326A	ENST00000371975	NM_003579.3	326	Act/Gct																																																																															
DDR2	4921	MSKCC	GRCh37	1	162750028	162750028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	211	545	1	ENST00000367921.3:c.2560G>A	p.Asp854Asn	p.D854N	ENST00000367921	NM_006182.2	854	Gac/Aac																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982974	201982974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	267	727	0	ENST00000359651.3:c.823C>A	p.Leu275Met	p.L275M	ENST00000359651		275	Ctg/Atg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230740	46230740	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	142	513	0	ENST00000334344.6:c.989T>G	p.Leu330Ter	p.L330*	ENST00000334344	NM_152641.2	330	tTa/tGa																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50483768	50483768	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	261	581	0	ENST00000394963.4:c.873G>C	p.Gln291His	p.Q291H	ENST00000394963	NM_003076.4	291	caG/caC																																																																															
FLT3	2322	MSKCC	GRCh37	13	28578209	28578209	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	82	636	0	ENST00000241453.7:c.2962G>T	p.Ala988Ser	p.A988S	ENST00000241453	NM_004119.2	988	Gct/Tct																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252983	36252991	+	inframe_deletion	In_Frame_Del	DEL	CATCTGGAA	CATCTGGAA	-			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	95	559	0	ENST00000300305.3:c.371_379del	p.Val124_Asp126del	p.V124_D126del	ENST00000300305		124	gTTCCAGATGgc/ggc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	214	606	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741689	17741689	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	20	410	0	ENST00000250003.3:c.361del	p.Arg121AlafsTer2	p.R121Afs*2	ENST00000250003	NM_002478.4	120	cgC/cg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94194145	94194145	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	56	515	0	ENST00000323929.3:c.1283G>T	p.Arg428Met	p.R428M	ENST00000323929	NM_005591.3	428	aGg/aTg																																																																															
ATM	472	MSKCC	GRCh37	11	108200991	108200991	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	45	397	0	ENST00000278616.4:c.7358G>C	p.Arg2453Pro	p.R2453P	ENST00000278616	NM_000051.3	2453	cGt/cCt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143235878	143235878	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	37	360	0	ENST00000262992.4:c.410C>A	p.Pro137Gln	p.P137Q	ENST00000262992	NM_001101669.1	137	cCg/cAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1221249	1221249	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	TAC			P-0024834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	61	626	0	ENST00000326873.7:c.772delinsTAC	p.Asp258TyrfsTer30	p.D258Yfs*30	ENST00000326873	NM_000455.4	258	Gac/TACac																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0024837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	336	327	1	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	213	735	1	ENST00000269305.4:c.476C>A	p.Ala159Asp	p.A159D	ENST00000269305	NM_001126112.2	159	gCc/gAc																																																																															
APC	324	MSKCC	GRCh37	5	112164604	112164605	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0024837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	81	328	0	ENST00000257430.4:c.1681_1682del	p.Lys561AspfsTer19	p.K561Dfs*19	ENST00000257430	NM_000038.5	560	AAa/a																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	212	321	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120675	115120676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	549	685	1	ENST00000257566.3:c.330dup	p.Glu111ArgfsTer27	p.E111Rfs*27	ENST00000257566	NM_016569.3	110	-/A																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097173	11097173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	360	504	0	ENST00000344626.4:c.664C>A	p.Pro222Thr	p.P222T	ENST00000344626	NM_003072.3	222	Cca/Aca																																																																															
RAC1	5879	MSKCC	GRCh37	7	6431637	6431637	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	313	443	0	ENST00000356142.4:c.190T>C	p.Tyr64His	p.Y64H	ENST00000356142	NM_018890.3	64	Tat/Cat																																																																															
MET	4233	MSKCC	GRCh37	7	116411886	116411904	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCTCTCTGTTTTAAGAT	TTTCTCTCTGTTTTAAGAT	-			P-0024841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1415	137	765	0	ENST00000397752.3:c.2888-17_2889del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
SMARCD1	6602	MSKCC	GRCh37	12	50479218	50479218	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	28	331	0	ENST00000394963.4:c.68del	p.Gly23AlafsTer47	p.G23Afs*47	ENST00000394963	NM_003076.4	22	gcG/gc																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480132	50480132	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0024843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	26	364	0	ENST00000394963.4:c.365+1G>A		p.X122_splice	ENST00000394963	NM_003076.4	122																																																																																
GATA3	2625	MSKCC	GRCh37	10	8100304	8100304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	84	556	2	ENST00000346208.3:c.278C>T	p.Ser93Phe	p.S93F	ENST00000346208		93	tCc/tTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023356	27023356	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	20	276	0	ENST00000324856.7:c.462del	p.Tyr154Ter	p.Y154*	ENST00000324856	NM_006015.4	154	taC/ta																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344648	118344658	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCTGCCAAA	CTTCTGCCAAA	-			P-0024850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	95	461	1	ENST00000534358.1:c.2774_2784del	p.Ser925Ter	p.S925*	ENST00000534358	NM_005933.3	925	tCTTCTGCCAAA/t																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0024799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	32	212	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0024799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	18	364	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ATM	472	MSKCC	GRCh37	11	108139220	108139221	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	30	489	0	ENST00000278616.4:c.2723dup	p.Thr909AsnfsTer11	p.T909Nfs*11	ENST00000278616	NM_000051.3	908	gta/gTta																																																																															
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	128	583	0	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466420	120466420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	34	473	1	ENST00000256646.2:c.4699C>T	p.Arg1567Trp	p.R1567W	ENST00000256646	NM_024408.3	1567	Cgg/Tgg																																																																															
CCND2	894	MSKCC	GRCh37	12	4383273	4383273	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	31	383	0	ENST00000261254.3:c.67G>C	p.Asp23His	p.D23H	ENST00000261254	NM_001759.3	23	Gac/Cac																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226090	2226090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	84	579	0	ENST00000326181.6:c.1787C>T	p.Thr596Met	p.T596M	ENST00000326181	NM_032271.2	596	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0024865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	96	579	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174466	112174466	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	19	278	1	ENST00000257430.4:c.3175G>T	p.Glu1059Ter	p.E1059*	ENST00000257430	NM_000038.5	1059	Gaa/Taa																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021211	31021211	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	110	485	2	ENST00000375687.4:c.1210C>T	p.Arg404Ter	p.R404*	ENST00000375687	NM_015338.5	404	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175271	112175271	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0024865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	36	204	0	ENST00000257430.4:c.3980C>G	p.Ser1327Ter	p.S1327*	ENST00000257430	NM_000038.5	1327	tCa/tGa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114905790	114905790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	98	560	0	ENST00000543371.1:c.809C>T	p.Pro270Leu	p.P270L	ENST00000543371	NM_001198531.1	270	cCa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0024871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	166	857	4	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0024871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	157	771	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048238	180048238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	155	824	3	ENST00000261937.6:c.2035C>T	p.Arg679Trp	p.R679W	ENST00000261937	NM_182925.4	679	Cgg/Tgg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118359336	118359337	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTG			P-0024871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	84	303	0	ENST00000534358.1:c.4341_4343dup	p.Cys1448dup	p.C1448dup	ENST00000534358	NM_005933.3	1448	tat/taTTGt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89809296	89809296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	89	639	1	ENST00000389301.3:c.3677C>T	p.Ser1226Leu	p.S1226L	ENST00000389301	NM_000135.2	1226	tCa/tTa																																																																															
INSR	3643	MSKCC	GRCh37	19	7152816	7152816	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	131	675	0	ENST00000302850.5:c.2152C>T	p.Gln718Ter	p.Q718*	ENST00000302850	NM_000208.2	718	Cag/Tag																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53241070	53241070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	110	520	0	ENST00000375401.3:c.1141G>A	p.Glu381Lys	p.E381K	ENST00000375401	NM_004187.3	381	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	95	511	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579430	7579448	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGGGGCCGCCGGTGTAG	GCAGGGGCCGCCGGTGTAG	-			P-0024873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	324	548	0	ENST00000269305.4:c.239_257del	p.Pro80HisfsTer37	p.P80Hfs*37	ENST00000269305	NM_001126112.2	80	cCTACACCGGCGGCCCCTGCa/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	74	702	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CBL	867	MSKCC	GRCh37	11	119148922	119148922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	104	489	0	ENST00000264033.4:c.1142G>A	p.Cys381Tyr	p.C381Y	ENST00000264033	NM_005188.3	381	tGt/tAt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023108	31023108	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	174	593	0	ENST00000375687.4:c.2593G>T	p.Glu865Ter	p.E865*	ENST00000375687	NM_015338.5	865	Gaa/Taa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156844792	156844792	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	42	627	0	ENST00000524377.1:c.1346G>C	p.Gly449Ala	p.G449A	ENST00000524377	NM_002529.3	449	gGg/gCg																																																																															
WT1	7490	MSKCC	GRCh37	11	32456423	32456424	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0024921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	195	718	2	ENST00000332351.3:c.468_469delinsAA	p.Cys156_Leu157delinsTer	p.C156_L157delins*	ENST00000332351	NM_024426.4	156	tgCCtg/tgAAtg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857426	9857426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	121	562	0	ENST00000330684.3:c.3975C>A	p.Tyr1325Ter	p.Y1325*	ENST00000330684	NM_001134407.1	1325	taC/taA																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799517	72799517	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	158	752	1	ENST00000325599.8:c.1652A>G	p.Gln551Arg	p.Q551R	ENST00000325599	NM_018130.2	551	cAg/cGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919164	178919164	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	66	349	0	ENST00000263967.3:c.649C>G	p.Pro217Ala	p.P217A	ENST00000263967	NM_006218.2	217	Cca/Gca																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928053	178928053	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	160	678	0	ENST00000263967.3:c.1331A>T	p.Asn444Ile	p.N444I	ENST00000263967	NM_006218.2	444	aAt/aTt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189937	66189937	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0024921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	67	298	1	ENST00000273854.3:c.3009G>T	p.Glu1003Asp	p.E1003D	ENST00000273854	NM_004439.5	1003	gaG/gaT																																																																															
IRF4	3662	MSKCC	GRCh37	6	401736	401736	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	107	625	0	ENST00000380956.4:c.1058A>T	p.Asp353Val	p.D353V	ENST00000380956	NM_001195286.1	353	gAc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	289	923	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445100	49445101	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	121	934	0	ENST00000301067.7:c.2365dup	p.Ser789PhefsTer5	p.S789Ffs*5	ENST00000301067	NM_003482.3	789	tcc/tTcc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	239	396	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78704456	78704469	+	frameshift_variant	Frame_Shift_Del	DEL	ATCGTCAAGTCCTT	ATCGTCAAGTCCTT	-			P-0024722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	88	465	0	ENST00000306801.3:c.604_617del	p.Ile202GlnfsTer55	p.I202Qfs*55	ENST00000306801	NM_020761.2	202	ATCGTCAAGTCCTTc/c																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52729039	52729039	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	138	547	0	ENST00000322088.6:c.1731C>A	p.Tyr577Ter	p.Y577*	ENST00000322088	NM_014225.5	577	taC/taA																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161665	56161667	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0024722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	259	492	0	ENST00000399503.3:c.1164_1166del	p.Leu388del	p.L388del	ENST00000399503	NM_005921.1	388	TTG/-																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179493	56179493	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	205	324	0	ENST00000399503.3:c.3806del	p.Met1269ArgfsTer6	p.M1269Rfs*6	ENST00000399503	NM_005921.1	1269	aTg/ag																																																																															
TAP1	6890	MSKCC	GRCh37	6	32814982	32814982	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0024722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	102	499	0	ENST00000354258.4:c.2084-1G>C		p.X695_splice	ENST00000354258	NM_000593.5	695																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	300	523	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	149	951	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372022	55372022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	18	492	2	ENST00000297316.4:c.712G>A	p.Ala238Thr	p.A238T	ENST00000297316	NM_022454.3	238	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	54	636	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0024737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	25	513	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
MITF	4286	MSKCC	GRCh37	3	69987114	69987114	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145387068		P-0024745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	93	474	0	ENST00000352241.4:c.496G>A	p.Asp166Asn	p.D166N	ENST00000352241	NM_198159.2	166	Gat/Aat																																																																															
RET	5979	MSKCC	GRCh37	10	43596002	43596002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	189	576	1	ENST00000355710.3:c.169C>T	p.Arg57Trp	p.R57W	ENST00000355710	NM_020975.4	57	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0024745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	43	340	1	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																															
APC	324	MSKCC	GRCh37	5	112175770	112175770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	46	251	0	ENST00000257430.4:c.4480delG	p.Glu1494LysfsTer13	p.E1494Kfs*13	ENST00000257430	NM_000038.5	1493	acG/ac																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119966	70120018	+	frameshift_variant	Frame_Shift_Del	DEL	GCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	GCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	-			P-0024745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	46	246	0	ENST00000245479.2:c.970_1022del	p.Thr324AlafsTer236	p.T324Afs*236	ENST00000245479	NM_000346.3	323	aGCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG/a																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549357	21549357	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	64	483	1	ENST00000382592.4:c.2919C>A	p.Phe973Leu	p.F973L	ENST00000382592	NM_014572.2	973	ttC/ttA																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562128	21562128	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	194	1018	2	ENST00000382592.4:c.1791C>A	p.Tyr597Ter	p.Y597*	ENST00000382592	NM_014572.2	597	taC/taA																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350636	89350636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	52	1084	2	ENST00000301030.4:c.2314C>T	p.Arg772Trp	p.R772W	ENST00000301030	NM_001256183.1	772	Cgg/Tgg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618525	37618525	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	80	497	0	ENST00000447079.4:c.201C>G	p.Ile67Met	p.I67M	ENST00000447079	NM_015083.1	67	atC/atG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0024772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	141	680	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0024772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	28	580	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245432	153245432	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	36	681	0	ENST00000281708.4:c.1759A>G	p.Met587Val	p.M587V	ENST00000281708	NM_033632.3	587	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0009403-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			361	283	588	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009403-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			389	416	570	1	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105895	27105895	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009403-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			361	238	358	0	ENST00000324856.7:c.5506G>T	p.Glu1836Ter	p.E1836*	ENST00000324856	NM_006015.4	1836	Gag/Tag																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851342	156851342	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009403-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			740	207	495	0	ENST00000524377.1:c.2299G>T	p.Glu767Ter	p.E767*	ENST00000524377	NM_002529.3	767	Gag/Tag																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56487547	56487547	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0009403-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			234	229	372	0	ENST00000267101.3:c.1481-1G>T		p.X494_splice	ENST00000267101	NM_001982.3	494																																																																																
TBX3	6926	MSKCC	GRCh37	12	115117764	115117764	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009403-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			436	40	407	0	ENST00000257566.3:c.671C>G	p.Pro224Arg	p.P224R	ENST00000257566	NM_016569.3	224	cCa/cGa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953453	32953453	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0009403-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			192	143	332	0	ENST00000380152.3:c.8755-1G>T		p.X2919_splice	ENST00000380152		2919																																																																																
STAT3	6774	MSKCC	GRCh37	17	40483518	40483518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009403-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			505	361	473	0	ENST00000264657.5:c.1081C>A	p.Gln361Lys	p.Q361K	ENST00000264657	NM_139276.2	361	Cag/Aag																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804217	46804217	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009403-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			777	141	535	0	ENST00000290295.7:c.790T>A	p.Phe264Ile	p.F264I	ENST00000290295	NM_006361.5	264	Ttt/Att																																																																															
IDH1	3417	MSKCC	GRCh37	2	209108239	209108239	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009403-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			608	251	629	0	ENST00000345146.2:c.610G>C	p.Gly204Arg	p.G204R	ENST00000345146	NM_005896.2	204	Ggt/Cgt																																																																															
SRC	6714	MSKCC	GRCh37	20	36031173	36031173	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009403-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			336	223	517	0	ENST00000358208.4:c.1292G>T	p.Trp431Leu	p.W431L	ENST00000358208		431	tGg/tTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47144835	47144835	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0009403-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			381	382	618	0	ENST00000409792.3:c.4917+1G>C		p.X1639_splice	ENST00000409792	NM_014159.6	1639																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31526433	31526433	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009403-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	160	817	0	ENST00000344624.3:c.607C>G	p.His203Asp	p.H203D	ENST00000344624		203	Cat/Gat																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526614	31526614	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009403-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			533	76	427	0	ENST00000344624.3:c.426C>G	p.Phe142Leu	p.F142L	ENST00000344624		142	ttC/ttG																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509092	106509092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009403-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			408	228	418	0	ENST00000359195.3:c.1086G>C	p.Arg362Ser	p.R362S	ENST00000359195	NM_002649.2	362	agG/agC																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87339158	87339158	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009403-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			357	212	406	0	ENST00000277120.3:c.740A>T	p.Gln247Leu	p.Q247L	ENST00000277120		247	cAg/cTg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44732822	44732822	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009403-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			435	63	304	0	ENST00000377967.4:c.25G>C	p.Ala9Pro	p.A9P	ENST00000377967	NM_021140.2	9	Gct/Cct																																																																															
MED12	9968	MSKCC	GRCh37	X	70360624	70360629	+	inframe_deletion	In_Frame_Del	DEL	CAGCAG	CAGCAG	-			P-0009403-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			551	36	297	0	ENST00000374080.3:c.6195_6200del	p.Gln2075_Gln2076del	p.Q2075_Q2076del	ENST00000374080		2062	CAGCAG/-																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912297	29912329	+	inframe_deletion	In_Frame_Del	DEL	ATCCCCATCGTGGGCATCATTGCTGGCCTGGTT	ATCCCCATCGTGGGCATCATTGCTGGCCTGGTT	-			P-0009403-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			428	139	676	0	ENST00000376809.5:c.916_948del	p.Ile306_Val316del	p.I306_V316del	ENST00000376809	NM_002116.7	306	ATCCCCATCGTGGGCATCATTGCTGGCCTGGTT/-																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	100	635	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	275	711	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0024590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	140	477	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0024590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	271	654	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245558	41245558	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	214	840	0	ENST00000357654.3:c.1990A>G	p.Arg664Gly	p.R664G	ENST00000357654	NM_007294.3	664	Aga/Gga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52588896	52588896	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0024590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	173	472	0	ENST00000394830.3:c.4133-1G>A		p.X1378_splice	ENST00000394830	NM_018313.4	1378																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	306	633	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0024591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	200	846	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
ERCC5	2073	MSKCC	GRCh37	13	103528056	103528056	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	87	379	0	ENST00000355739.4:c.3364C>G	p.Pro1122Ala	p.P1122A	ENST00000355739	NM_000123.3	1122	Cca/Gca																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604739	48604739	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	60	429	0	ENST00000342988.3:c.1561A>C	p.Thr521Pro	p.T521P	ENST00000342988	NM_005359.5	521	Aca/Cca																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0024597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	78	275	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627224	37627224	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200075664		P-0024597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	133	685	2	ENST00000447079.4:c.1139G>A	p.Arg380His	p.R380H	ENST00000447079	NM_015083.1	380	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577519	7577527	+	inframe_deletion	In_Frame_Del	DEL	GATGGTGAG	GATGGTGAG	-			P-0024597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	163	864	1	ENST00000269305.4:c.754_762del	p.Leu252_Ile254del	p.L252_I254del	ENST00000269305	NM_001126112.2	252	CTCACCATC/-																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589589	67589590	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0024597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	172	433	0	ENST00000274335.5:c.1356_1357dup	p.Asn453IlefsTer28	p.N453Ifs*28	ENST00000274335		451	gaa/gaATa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104610	69104610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	121	863	0	ENST00000288368.4:c.4454T>A	p.Leu1485Gln	p.L1485Q	ENST00000288368	NM_024870.2	1485	cTg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0024641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	218	583	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0024641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	348	868	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32945129	32945129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	37	368	2	ENST00000380152.3:c.8524C>T	p.Arg2842Cys	p.R2842C	ENST00000380152		2842	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593491	48593494	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0024641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	11	354	0	ENST00000342988.3:c.1245_1248del	p.Asp415GlufsTer20	p.D415Efs*20	ENST00000342988	NM_005359.5	414	ttAGAC/tt																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158713	26158713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	124	302	0	ENST00000289316.2:c.316G>A	p.Glu106Lys	p.E106K	ENST00000289316	NM_138720.2	106	Gag/Aag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214618	5214618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	233	807	0	ENST00000357368.4:c.4448G>A	p.Arg1483Gln	p.R1483Q	ENST00000357368	NM_002850.3	1483	cGg/cAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971068	21971068	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	211	521	0	ENST00000304494.5:c.290T>C	p.Leu97Pro	p.L97P	ENST00000304494	NM_000077.4	97	cTg/cCg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749509	41749509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	133	589	0	ENST00000226382.2:c.286C>T	p.Arg96Cys	p.R96C	ENST00000226382	NM_003924.3	96	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593515	48593521	+	frameshift_variant	Frame_Shift_Del	DEL	TGGAGAT	TGGAGAT	-			P-0024641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	15	312	0	ENST00000342988.3:c.1266_1272del	p.Gly423LeufsTer11	p.G423Lfs*11	ENST00000342988	NM_005359.5	422	ccTGGAGAT/cc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189909	66189909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	56	357	1	ENST00000273854.3:c.3037G>T	p.Val1013Phe	p.V1013F	ENST00000273854	NM_004439.5	1013	Gtc/Ttc																																																																															
BRAF	673	MSKCC	GRCh37	7	140454033	140454033	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0024641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	113	308	0	ENST00000288602.6:c.1695T>A	p.Asp565Glu	p.D565E	ENST00000288602	NM_004333.4	565	gaT/gaA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0024670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	257	492	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0024670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	86	553	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2120516	2120516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	26	587	0	ENST00000219476.3:c.1776C>A	p.Ser592Arg	p.S592R	ENST00000219476	NM_000548.3	592	agC/agA																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786440	135786440	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	33	558	0	ENST00000298552.3:c.1090A>G	p.Asn364Asp	p.N364D	ENST00000298552	NM_001162426.1	364	Aat/Gat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	219	630	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519980		P-0024671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	82	552	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457223	67457232	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	GTCCTGGCAG	GTCCTGGCAG	-			P-0024671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	78	442	0	ENST00000327367.4:c.207-6_210del		p.X69_splice	ENST00000327367	NM_005902.3	69																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32169006	32169006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	302	706	0	ENST00000375023.3:c.4027C>T	p.Pro1343Ser	p.P1343S	ENST00000375023	NM_004557.3	1343	Cct/Tct																																																																															
STK11	6794	MSKCC	GRCh37	19	1221987	1221987	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	420	536	0	ENST00000326873.7:c.903del	p.Gln302ArgfsTer34	p.Q302Rfs*34	ENST00000326873	NM_000455.4	301	cGg/cg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106126	27106126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	165	496	0	ENST00000324856.7:c.5737G>A	p.Asp1913Asn	p.D1913N	ENST00000324856	NM_006015.4	1913	Gac/Aac																																																																															
ATM	472	MSKCC	GRCh37	11	108196917	108196917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	238	426	1	ENST00000278616.4:c.6940C>T	p.Gln2314Ter	p.Q2314*	ENST00000278616	NM_000051.3	2314	Caa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49422729	49422729	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	177	502	0	ENST00000301067.7:c.14264C>G	p.Thr4755Ser	p.T4755S	ENST00000301067	NM_003482.3	4755	aCc/aGc																																																																															
MGA	23269	MSKCC	GRCh37	15	42050038	42050038	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0024684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	81	348	0	ENST00000219905.7:c.7191+1G>T		p.X2397_splice	ENST00000219905	NM_001164273.1	2397																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10602335	10602342	+	frameshift_variant	Frame_Shift_Del	DEL	GGTTACGG	GGTTACGG	-			P-0024684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	517	685	2	ENST00000171111.5:c.1236_1243del	p.Arg413HisfsTer29	p.R413Hfs*29	ENST00000171111	NM_203500.1	412	ccCCGTAACCgc/ccgc																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138461576	138461576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	317	543	1	ENST00000289153.2:c.445C>T	p.Arg149Ter	p.R149*	ENST00000289153	NM_006219.2	149	Cga/Tga																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553416	106553416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	217	281	1	ENST00000369096.4:c.1381C>T	p.Leu461Phe	p.L461F	ENST00000369096	NM_001198.3	461	Ctc/Ttc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0024685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	373	602	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0024685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	289	515	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40375510	40375510	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768919211		P-0024685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	52	761	1	ENST00000293328.3:c.440C>T	p.Thr147Met	p.T147M	ENST00000293328	NM_012448.3	147	aCg/aTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140482926	140482927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs777474487		P-0024685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	160	634	2	ENST00000288602.6:c.1208dup	p.Ala404CysfsTer9	p.A404Cfs*9	ENST00000288602	NM_004333.4	403	cct/ccCt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716329	52716329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	172	593	1	ENST00000322088.6:c.773G>A	p.Arg258His	p.R258H	ENST00000322088	NM_014225.5	258	cGc/cAc																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557739	21557739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	173	698	0	ENST00000382592.4:c.2106G>T	p.Lys702Asn	p.K702N	ENST00000382592	NM_014572.2	702	aaG/aaT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0024687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	143	700	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0024687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	191	816	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111499	8111500	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	182	899	0	ENST00000346208.3:c.987dup	p.Arg330GlufsTer22	p.R330Efs*22	ENST00000346208		329	agg/aGgg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023601	27023602	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0024687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	76	210	0	ENST00000324856.7:c.708_709insCT	p.Gly237LeufsTer127	p.G237Lfs*127	ENST00000324856	NM_006015.4	236	ggt/ggTCt																																																																															
YAP1	10413	MSKCC	GRCh37	11	101985034	101985034	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	168	991	1	ENST00000282441.5:c.481C>T	p.Arg161Ter	p.R161*	ENST00000282441	NM_001130145.2	161	Cga/Tga																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66774092	66774092	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0024687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	17	860	0	ENST00000307102.5:c.569-1G>A		p.X190_splice	ENST00000307102	NM_002755.3	190																																																																																
RNF43	54894	MSKCC	GRCh37	17	56448347	56448347	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1776	203	841	0	ENST00000407977.2:c.300G>C	p.Glu100Asp	p.E100D	ENST00000407977		100	gaG/gaC																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15285044	15285044	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	151	547	0	ENST00000263388.2:c.4571T>C	p.Leu1524Pro	p.L1524P	ENST00000263388	NM_000435.2	1524	cTa/cCa																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121260	29121260	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	194	1086	0	ENST00000328354.6:c.415T>C	p.Tyr139His	p.Y139H	ENST00000328354	NM_007194.3	139	Tac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	213	800	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120987	115120987	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	40	675	0	ENST00000257566.3:c.19G>C	p.Asp7His	p.D7H	ENST00000257566	NM_016569.3	7	Gat/Cat																																																																															
MGA	23269	MSKCC	GRCh37	15	42041353	42041353	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	84	752	0	ENST00000219905.7:c.5548G>C	p.Glu1850Gln	p.E1850Q	ENST00000219905	NM_001164273.1	1850	Gag/Cag																																																																															
BLM	641	MSKCC	GRCh37	15	91346851	91346851	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	57	593	0	ENST00000355112.3:c.3459G>C	p.Lys1153Asn	p.K1153N	ENST00000355112	NM_000057.2	1153	aaG/aaC																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639021	3639021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	78	755	1	ENST00000294008.3:c.4618G>A	p.Glu1540Lys	p.E1540K	ENST00000294008	NM_032444.2	1540	Gaa/Aaa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900428	3900428	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	87	853	0	ENST00000262367.5:c.668G>C	p.Gly223Ala	p.G223A	ENST00000262367	NM_004380.2	223	gGa/gCa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825479	50825479	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	44	459	0	ENST00000398568.2:c.2110C>G	p.Gln704Glu	p.Q704E	ENST00000398568	NM_001042412.1	704	Caa/Gaa																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968325	15968325	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	45	422	0	ENST00000268712.3:c.4960G>C	p.Asp1654His	p.D1654H	ENST00000268712	NM_006311.3	1654	Gac/Cac																																																																															
EZH1	2145	MSKCC	GRCh37	17	40880910	40880910	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	92	881	0	ENST00000428826.2:c.50G>C	p.Arg17Thr	p.R17T	ENST00000428826		17	aGa/aCa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956522	93956522	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	46	545	0	ENST00000369303.4:c.2714G>C	p.Gly905Ala	p.G905A	ENST00000369303	NM_004440.3	905	gGa/gCa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5054879	5054879	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	33	505	0	ENST00000381652.3:c.931G>T	p.Glu311Ter	p.E311*	ENST00000381652	NM_004972.3	311	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	85	663	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216379	7216380	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	78	622	0	ENST00000380728.2:c.868dupC	p.Gln290ProfsTer?	p.Q290Pfs*?	ENST00000380728		290	cag/cCag																																																																															
CBFB	865	MSKCC	GRCh37	16	67070608	67070608	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	35	275	0	ENST00000412916.2:c.232C>T	p.Arg78Ter	p.R78*	ENST00000412916		78	Cga/Tga																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	130	213	0				ENST00000310581	NM_198253.2																																																																																	
RBM10	8241	MSKCC	GRCh37	X	47044699	47044699	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0024758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	223	477	0	ENST00000329236.7:c.1867-2A>T		p.X623_splice	ENST00000329236	NM_001204466.1	623																																																																																
INPP4B	8821	MSKCC	GRCh37	4	143044500	143044500	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	107	488	0	ENST00000262992.4:c.1962G>C	p.Gln654His	p.Q654H	ENST00000262992	NM_001101669.1	654	caG/caC																																																																															
PGR	5241	MSKCC	GRCh37	11	100999317	100999317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	70	929	0	ENST00000325455.5:c.485C>A	p.Ser162Tyr	p.S162Y	ENST00000325455	NM_001202474.3	162	tCc/tAc																																																																															
RB1	5925	MSKCC	GRCh37	13	48955527	48955527	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	39	485	0	ENST00000267163.4:c.1643A>T	p.Lys548Ile	p.K548I	ENST00000267163	NM_000321.2	548	aAa/aTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29509572	29509572	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	153	692	0	ENST00000358273.4:c.777del	p.Ser259ArgfsTer22	p.S259Rfs*22	ENST00000358273	NM_001042492.2	259	agC/ag																																																																															
NF1	4763	MSKCC	GRCh37	17	29509681	29509681	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0024758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	91	539	0	ENST00000358273.4:c.886A>T	p.Lys296Ter	p.K296*	ENST00000358273	NM_001042492.2	296	Aag/Tag																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520155	9520155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	135	517	0	ENST00000353224.5:c.2114C>A	p.Pro705Gln	p.P705Q	ENST00000353224	NM_177990.2	705	cCa/cAa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149459687	149459687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	205	807	0	ENST00000286301.3:c.520G>T	p.Asp174Tyr	p.D174Y	ENST00000286301	NM_005211.3	174	Gac/Tac																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288680	33288680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	116	471	0	ENST00000374542.5:c.872G>A	p.Arg291Gln	p.R291Q	ENST00000374542	NM_001141970.1	291	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416557	49416557	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	228	629	2	ENST00000301067.7:c.16154C>A	p.Ser5385Ter	p.S5385*	ENST00000301067	NM_003482.3	5385	tCa/tAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576848	7576855	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTACCTG	AGTACCTG	-			P-0024762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	181	691	0	ENST00000269305.4:c.991_993+5del		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	305	325	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220715	1220715	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	188	218	0	ENST00000326873.7:c.733C>T	p.Leu245Phe	p.L245F	ENST00000326873	NM_000455.4	245	Ctc/Ttc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65307277	65307277	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	121	175	0	ENST00000342505.4:c.2411G>C	p.Arg804Thr	p.R804T	ENST00000342505	NM_002227.2	804	aGa/aCa																																																																															
ETV1	2115	MSKCC	GRCh37	7	14027744	14027744	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	189	327	0	ENST00000405192.2:c.100T>A	p.Phe34Ile	p.F34I	ENST00000405192	NM_001163147.1	34	Ttc/Atc																																																																															
HGF	3082	MSKCC	GRCh37	7	81350086	81350086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	234	324	1	ENST00000222390.5:c.1246G>A	p.Asp416Asn	p.D416N	ENST00000222390	NM_000601.4	416	Gac/Aac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819261	3819261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	136	302	0	ENST00000262367.5:c.2974G>T	p.Val992Leu	p.V992L	ENST00000262367	NM_004380.2	992	Gta/Tta																																																																															
NUP93	9688	MSKCC	GRCh37	16	56852603	56852603	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	169	448	0	ENST00000308159.5:c.517C>A	p.Pro173Thr	p.P173T	ENST00000308159	NM_014669.4	173	Cct/Act																																																																															
NF1	4763	MSKCC	GRCh37	17	29548916	29548916	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	63	194	0	ENST00000358273.4:c.1690G>T	p.Asp564Tyr	p.D564Y	ENST00000358273	NM_001042492.2	564	Gat/Tat																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143973	11143973	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	98	223	0	ENST00000344626.4:c.3554A>G	p.Gln1185Arg	p.Q1185R	ENST00000344626	NM_003072.3	1185	cAa/cGa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602762	10602763	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0004488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	144	297	0	ENST00000171111.5:c.815_816del	p.Arg272LeufsTer77	p.R272Lfs*77	ENST00000171111	NM_203500.1	272	cGC/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0005730-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			479	171	430	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0005730-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			106	31	129	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467835	50467835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005730-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			212	30	193	0	ENST00000331340.3:c.1070G>T	p.Gly357Val	p.G357V	ENST00000331340	NM_006060.4	357	gGc/gTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857656	9857656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005730-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			116	17	226	0	ENST00000330684.3:c.3745G>A	p.Asp1249Asn	p.D1249N	ENST00000330684	NM_001134407.1	1249	Gat/Aat																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929155	32929155	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	59	649	0	ENST00000380152.3:c.7165A>G	p.Arg2389Gly	p.R2389G	ENST00000380152		2389	Aga/Gga																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098925	47098926	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	109	384	0	ENST00000409792.3:c.6348_6349insA	p.Ser2117IlefsTer10	p.S2117Ifs*10	ENST00000409792	NM_014159.6	2116	-/A																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163371	47163373	+	frameshift_variant	Frame_Shift_Del	DEL	CTG	CTG	A			P-0007633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	41	339	0	ENST00000409792.3:c.2753_2755delinsT	p.Ser918LeufsTer16	p.S918Lfs*16	ENST00000409792	NM_014159.6	918	tCAGag/tTag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023851-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			545	208	631	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023831	27023831	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023851-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			214	117	394	0	ENST00000324856.7:c.941del	p.Gly314AlafsTer49	p.G314Afs*49	ENST00000324856	NM_006015.4	313	Ggg/gg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446175	49446175	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023851-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			488	228	588	0	ENST00000301067.7:c.1291G>T	p.Glu431Ter	p.E431*	ENST00000301067	NM_003482.3	431	Gag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524889	187524889	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023851-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			295	194	507	0	ENST00000441802.2:c.10791del	p.Lys3598SerfsTer2	p.K3598Sfs*2	ENST00000441802	NM_005245.3	3597	ggC/gg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879658	151879658	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023851-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			206	70	199	0	ENST00000262189.6:c.5287C>T	p.Gln1763Ter	p.Q1763*	ENST00000262189	NM_170606.2	1763	Cag/Tag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0024561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	185	452	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1221226	1221227	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGTCTG			P-0024561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	275	763	0	ENST00000326873.7:c.750_756dup	p.Tyr253GlyfsTer15	p.Y253Gfs*15	ENST00000326873	NM_000455.4	250	acg/acGGGTCTGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	281	877	0	ENST00000269305.4:c.587G>C	p.Arg196Pro	p.R196P	ENST00000269305	NM_001126112.2	196	cGa/cCa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467763	50467763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1308	243	756	2	ENST00000331340.3:c.998C>T	p.Thr333Met	p.T333M	ENST00000331340	NM_006060.4	333	aCg/aTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89350976	89350994	+	frameshift_variant	Frame_Shift_Del	DEL	AGTAAAACTTTTCAACTTC	AGTAAAACTTTTCAACTTC	-			P-0024562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	251	1178	2	ENST00000301030.4:c.1956_1974del	p.Lys653ThrfsTer16	p.K653Tfs*16	ENST00000301030	NM_001256183.1	652	ctGAAGTTGAAAAGTTTTACT/ct																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715721	30715721	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	165	618	1	ENST00000359013.4:c.1454G>C	p.Arg485Pro	p.R485P	ENST00000359013	NM_001024847.2	485	cGc/cCc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86682717	86682725	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGGGTATG	TGGGGTATG	-			P-0024562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	211	419	0	ENST00000274376.6:c.2923_2925+6del		p.X975_splice	ENST00000274376	NM_002890.2	975																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	220	882	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508064	106508064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	30	260	2	ENST00000359195.3:c.58C>T	p.Arg20Cys	p.R20C	ENST00000359195	NM_002649.2	20	Cgc/Tgc																																																																															
MYCL1	4610	MSKCC	GRCh37	1	40363628	40363628	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	98	697	0	ENST00000397332.2:c.601G>C	p.Asp201His	p.D201H	ENST00000397332	NM_001033082.2	201	Gat/Cat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421620	49421620	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	257	913	0	ENST00000301067.7:c.14609A>G	p.Lys4870Arg	p.K4870R	ENST00000301067	NM_003482.3	4870	aAg/aGg																																																																															
FLT1	2321	MSKCC	GRCh37	13	29004248	29004248	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	92	645	1	ENST00000282397.4:c.1045G>T	p.Gly349Cys	p.G349C	ENST00000282397	NM_002019.4	349	Ggc/Tgc																																																																															
AXL	558	MSKCC	GRCh37	19	41744461	41744462	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGGTACCCTGTT			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	100	985	0	ENST00000301178.4:c.1090_1102dup	p.Arg368ProfsTer123	p.R368Pfs*123	ENST00000301178	NM_021913.4	361	cag/cAGGGTACCCTGTTag																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22160186	22160186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	36	512	0	ENST00000215832.6:c.445G>A	p.Asp149Asn	p.D149N	ENST00000215832	NM_002745.4	149	Gac/Aac																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259458	89259458	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	105	818	0	ENST00000336596.2:c.602A>T	p.Lys201Met	p.K201M	ENST00000336596	NM_005233.5	201	aAg/aTg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518076	176518076	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	39	893	0	ENST00000292408.4:c.574C>G	p.His192Asp	p.H192D	ENST00000292408	NM_213647.1	192	Cat/Gat																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066627	94066627	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	47	777	0	ENST00000369303.4:c.1132G>C	p.Glu378Gln	p.E378Q	ENST00000369303	NM_004440.3	378	Gaa/Caa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729336	41729336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	168	681	0	ENST00000242208.4:c.1193C>T	p.Pro398Leu	p.P398L	ENST00000242208	NM_002192.2	398	cCc/cTc																																																																															
NBN	4683	MSKCC	GRCh37	8	90967598	90967598	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	67	669	0	ENST00000265433.3:c.1310del	p.Pro437GlnfsTer3	p.P437Qfs*3	ENST00000265433	NM_002485.4	437	cCa/ca																																																																															
NBN	4683	MSKCC	GRCh37	8	90967652	90967652	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	76	659	0	ENST00000265433.3:c.1256A>G	p.Asn419Ser	p.N419S	ENST00000265433	NM_002485.4	419	aAt/aGt																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127933411	127933411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	33	865	3	ENST00000373547.4:c.124C>T	p.Gln42Ter	p.Q42*	ENST00000373547	NM_002721.4	42	Cag/Tag																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0024568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	104	712	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0024568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	257	809	0	ENST00000269305.4:c.686_687delGT	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																																																															
CBFB	865	MSKCC	GRCh37	16	67070639	67070639	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0024568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	60	340	0	ENST00000412916.2:c.263T>G	p.Leu88Ter	p.L88*	ENST00000412916		88	tTa/tGa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931898	68931898	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	48	828	0	ENST00000288368.4:c.328C>G	p.Leu110Val	p.L110V	ENST00000288368	NM_024870.2	110	Ctt/Gtt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	38	639	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0024570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	76	699	1	ENST00000269305.4:c.560-1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71944161	71944161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	87	784	0	ENST00000298229.2:c.1994G>A	p.Arg665Gln	p.R665Q	ENST00000298229	NM_001567.3	665	cGg/cAg																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46583304	46583304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	46	455	0	ENST00000263734.3:c.232G>A	p.Glu78Lys	p.E78K	ENST00000263734	NM_001430.4	78	Gag/Aag																																																																															
RAD50	10111	MSKCC	GRCh37	5	131924481	131924481	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150030986		P-0024570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	28	628	1	ENST00000265335.6:c.1154G>A	p.Arg385His	p.R385H	ENST00000265335		385	cGt/cAt																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5534888	5534888	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	54	642	2	ENST00000397747.3:c.199T>C	p.Ser67Pro	p.S67P	ENST00000397747	NM_025239.3	67	Tcc/Ccc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	97	813	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	74	705	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2108765	2108765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	73	806	2	ENST00000219476.3:c.866C>T	p.Ala289Val	p.A289V	ENST00000219476	NM_000548.3	289	gCg/gTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971087	21971087	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	65	598	0	ENST00000304494.5:c.271del	p.Leu91TrpfsTer55	p.L91Wfs*55	ENST00000304494	NM_000077.4	91	Ctg/tg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581298	48581298	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	99	757	0	ENST00000342988.3:c.602T>A	p.Leu201Ter	p.L201*	ENST00000342988	NM_005359.5	201	tTa/tAa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949155	44949155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	75	309	0	ENST00000377967.4:c.3716G>T	p.Trp1239Leu	p.W1239L	ENST00000377967	NM_021140.2	1239	tGg/tTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	35	538	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258670	16258670	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	33	654	0	ENST00000375759.3:c.5935G>C	p.Glu1979Gln	p.E1979Q	ENST00000375759	NM_015001.2	1979	Gag/Cag																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032045	26032045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	32	521	0	ENST00000244661.2:c.244G>A	p.Asp82Asn	p.D82N	ENST00000244661	NM_003537.3	82	Gat/Aat																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259936	16259936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	53	687	0	ENST00000375759.3:c.7201G>A	p.Asp2401Asn	p.D2401N	ENST00000375759	NM_015001.2	2401	Gac/Aac																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259189	16259189	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	52	622	0	ENST00000375759.3:c.6454G>C	p.Asp2152His	p.D2152H	ENST00000375759	NM_015001.2	2152	Gac/Cac																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259699	16259699	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	54	537	1	ENST00000375759.3:c.6964G>T	p.Glu2322Ter	p.E2322*	ENST00000375759	NM_015001.2	2322	Gaa/Taa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259830	16259830	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	42	595	0	ENST00000375759.3:c.7095G>C	p.Glu2365Asp	p.E2365D	ENST00000375759	NM_015001.2	2365	gaG/gaC																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481375	56481375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	142	776	1	ENST00000267101.3:c.562G>A	p.Glu188Lys	p.E188K	ENST00000267101	NM_001982.3	188	Gag/Aag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120750	115120750	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	215	638	0	ENST00000257566.3:c.256del	p.His86IlefsTer2	p.H86Ifs*2	ENST00000257566	NM_016569.3	86	Cat/at																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438345	110438345	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	96	230	0	ENST00000375856.3:c.56A>G	p.Asn19Ser	p.N19S	ENST00000375856	NM_003749.2	19	aAc/aGc																																																																															
CDH1	999	MSKCC	GRCh37	16	68849650	68849650	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	197	524	0	ENST00000261769.5:c.1554del	p.Glu518AspfsTer4	p.E518Dfs*4	ENST00000261769	NM_004360.3	518	gAa/ga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15960943	15960943	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	43	487	1	ENST00000268712.3:c.6277G>C	p.Val2093Leu	p.V2093L	ENST00000268712	NM_006311.3	2093	Gtg/Ctg																																																																															
NF1	4763	MSKCC	GRCh37	17	29661936	29661936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	60	672	0	ENST00000358273.4:c.5893G>A	p.Asp1965Asn	p.D1965N	ENST00000358273	NM_001042492.2	1965	Gat/Aat																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627477	14627477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	38	559	0	ENST00000254322.2:c.593G>C	p.Arg198Pro	p.R198P	ENST00000254322	NM_006145.1	198	cGa/cCa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15295222	15295222	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142405648		P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	145	889	0	ENST00000263388.2:c.2450C>T	p.Pro817Leu	p.P817L	ENST00000263388	NM_000435.2	817	cCc/cTc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46574146	46574146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	222	692	0	ENST00000263734.3:c.161C>T	p.Ala54Val	p.A54V	ENST00000263734	NM_001430.4	54	gCc/gTc																																																																															
RAC2	5880	MSKCC	GRCh37	22	37622819	37622819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	45	734	0	ENST00000249071.6:c.473C>T	p.Ser158Leu	p.S158L	ENST00000249071	NM_002872.4	158	tCa/tTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0024578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	26	337	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710622	114710622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	35	545	2	ENST00000543371.1:c.107C>T	p.Ser36Leu	p.S36L	ENST00000543371	NM_001198531.1	36	tCg/tTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68835723	68835723	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	49	697	0	ENST00000261769.5:c.315del	p.Thr106ProfsTer11	p.T106Pfs*11	ENST00000261769	NM_004360.3	105	tCc/tc																																																																															
NF1	4763	MSKCC	GRCh37	17	29665755	29665756	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A	rs1230257170		P-0024578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	40	423	0	ENST00000358273.4:c.6854dup	p.Tyr2285Ter	p.Y2285*	ENST00000358273	NM_001042492.2	2285	tac/tAac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	71	674	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520006		P-0024579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	78	669	0	ENST00000269305.4:c.821T>G	p.Val274Gly	p.V274G	ENST00000269305	NM_001126112.2	274	gTt/gGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0024579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	24	243	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591809	48591809	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	72	480	0	ENST00000342988.3:c.972T>A	p.Cys324Ter	p.C324*	ENST00000342988	NM_005359.5	324	tgT/tgA																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410151	139410151	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	59	574	1	ENST00000277541.6:c.1687T>A	p.Cys563Ser	p.C563S	ENST00000277541	NM_017617.3	563	Tgc/Agc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696438	47696438	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	290	703	0	ENST00000347630.2:c.385A>G	p.Lys129Glu	p.K129E	ENST00000347630	NM_001007230.1	129	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587782082		P-0024585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	112	769	2	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89712013	89712014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	50	298	0	ENST00000371953.3:c.632dup	p.Cys211TrpfsTer32	p.C211Wfs*32	ENST00000371953	NM_000314.4	211	tgc/tGgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	174	716	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0024587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	48	645	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
ATM	472	MSKCC	GRCh37	11	108141793	108141793	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0024587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	56	573	0	ENST00000278616.4:c.2841T>A	p.Tyr947Ter	p.Y947*	ENST00000278616	NM_000051.3	947	taT/taA																																																																															
SDHA	6389	MSKCC	GRCh37	5	235428	235428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	39	718	0	ENST00000264932.6:c.1234G>A	p.Gly412Ser	p.G412S	ENST00000264932	NM_004168.2	412	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0024588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	222	845	2	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252873	36252873	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	169	577	0	ENST00000300305.3:c.489T>G	p.Phe163Leu	p.F163L	ENST00000300305		163	ttT/ttG																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0024603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	70	151	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578249	7578250	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	156	374	0	ENST00000269305.4:c.599dupA	p.Asn200LysfsTer9	p.N200Kfs*9	ENST00000269305	NM_001126112.2	200	aat/aaAt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981803	201981803	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139817965		P-0024603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	78	419	0	ENST00000359651.3:c.514G>A	p.Asp172Asn	p.D172N	ENST00000359651		172	Gac/Aac																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575551	64575551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	122	339	0	ENST00000337652.1:c.481G>A	p.Gly161Ser	p.G161S	ENST00000337652	NM_130803.2	161	Ggt/Agt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672772	30672772	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	160	493	0	ENST00000376406.3:c.4188A>T	p.Lys1396Asn	p.K1396N	ENST00000376406	NM_014641.2	1396	aaA/aaT																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673782	30673782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	37	321	0	ENST00000376406.3:c.3178C>A	p.His1060Asn	p.H1060N	ENST00000376406	NM_014641.2	1060	Cat/Aat																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38189104	38189104	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0024603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	53	270	0	ENST00000317025.8:c.911-1G>A		p.X304_splice	ENST00000317025	NM_023034.1	304																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	156	527	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KDR	3791	MSKCC	GRCh37	4	55979551	55979551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	170	558	0	ENST00000263923.4:c.896G>A	p.Arg299Gln	p.R299Q	ENST00000263923	NM_002253.2	299	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0024613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	214	669	1	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
RFWD2	64326	MSKCC	GRCh37	1	175916343	175916343	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	82	399	0	ENST00000367669.3:c.2166G>C	p.Gln722His	p.Q722H	ENST00000367669	NM_022457.5	722	caG/caC																																																																															
CD79B	974	MSKCC	GRCh37	17	62008712	62008712	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	94	631	0	ENST00000392795.3:c.104G>T	p.Arg35Leu	p.R35L	ENST00000392795	NM_001039933.1	35	cGg/cTg																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62326183	62326183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	186	628	1	ENST00000508582.2:c.3271G>A	p.Ala1091Thr	p.A1091T	ENST00000508582		1091	Gcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	40	339	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945382	151945382	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	41	432	0	ENST00000262189.6:c.2137del	p.Glu713AsnfsTer5	p.E713Nfs*5	ENST00000262189	NM_170606.2	713	Gaa/aa																																																																															
MED12	9968	MSKCC	GRCh37	X	70339981	70339981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7	257	185	0	ENST00000374080.3:c.514G>A	p.Glu172Lys	p.E172K	ENST00000374080		172	Gag/Aag																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273231	18273231	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1260910794		P-0024538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	238	603	0	ENST00000222254.8:c.1024G>A	p.Glu342Lys	p.E342K	ENST00000222254	NM_005027.3	342	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261368	16261368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	292	524	0	ENST00000375759.3:c.8633C>T	p.Ala2878Val	p.A2878V	ENST00000375759	NM_015001.2	2878	gCg/gTg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061132	38061145	+	protein_altering_variant	In_Frame_Del	DEL	CCGCTGCCCCCGCT	CCGCTGCCCCCGCT	GG			P-0024538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	117	237	3	ENST00000250448.2:c.844_857delinsCC	p.Ser282_Gly286delinsPro	p.S282_G286delinsP	ENST00000250448	NM_004496.3	282	AGCGGGGGCAGCGGc/CCc																																																																															
AR	367	MSKCC	GRCh37	X	66943551	66943551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			13	224	219	0	ENST00000374690.3:c.2631C>A	p.Phe877Leu	p.F877L	ENST00000374690	NM_000044.3	877	ttC/ttA																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44929386	44929386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	10	242	0	ENST00000377967.4:c.2486C>T	p.Ser829Phe	p.S829F	ENST00000377967	NM_021140.2	829	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	183	671	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	105	567	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056210	26056210	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	65	506	0	ENST00000343677.2:c.447G>C	p.Lys149Asn	p.K149N	ENST00000343677	NM_005319.3	149	aaG/aaC																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67482854	67482854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	62	497	0	ENST00000327367.4:c.1258C>T	p.Arg420Cys	p.R420C	ENST00000327367	NM_005902.3	420	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112137036	112137036	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	90	431	0	ENST00000257430.4:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000257430	NM_000038.5	264	Caa/Taa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151891193	151891193	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	133	511	1	ENST00000262189.6:c.4561G>T	p.Glu1521Ter	p.E1521*	ENST00000262189	NM_170606.2	1521	Gaa/Taa																																																																															
NUP93	9688	MSKCC	GRCh37	16	56857686	56857686	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	81	503	0	ENST00000308159.5:c.722C>G	p.Ala241Gly	p.A241G	ENST00000308159	NM_014669.4	241	gCc/gGc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868304	56868304	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	52	274	0	ENST00000308159.5:c.1687G>C	p.Glu563Gln	p.E563Q	ENST00000308159	NM_014669.4	563	Gaa/Caa																																																																															
UPF1	5976	MSKCC	GRCh37	19	18964084	18964084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	59	502	0	ENST00000262803.5:c.1081G>A	p.Glu361Lys	p.E361K	ENST00000262803	NM_002911.3	361	Gag/Aag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251647	212251647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	53	450	0	ENST00000342788.4:c.3412G>A	p.Glu1138Lys	p.E1138K	ENST00000342788	NM_005235.2	1138	Gaa/Aaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41279562	41279562	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	115	421	0	ENST00000349496.5:c.2132A>T	p.Gln711Leu	p.Q711L	ENST00000349496	NM_001904.3	711	cAg/cTg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164744	47164744	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	117	405	0	ENST00000409792.3:c.1382C>G	p.Ser461Ter	p.S461*	ENST00000409792	NM_014159.6	461	tCa/tGa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048863	180048863	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	155	852	0	ENST00000261937.6:c.1699G>C	p.Glu567Gln	p.E567Q	ENST00000261937	NM_182925.4	567	Gag/Cag																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89790752	89790752	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	65	710	0	ENST00000336032.3:c.139G>T	p.Asp47Tyr	p.D47Y	ENST00000336032	NM_006813.2	47	Gac/Tac																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127911953	127911953	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	104	385	0	ENST00000373547.4:c.917G>C	p.Ter306SerextTer7	p.*306Sext*7	ENST00000373547	NM_002721.4	306	tGa/tCa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092983	27092984	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	T			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	161	380	0	ENST00000324856.7:c.2914_2915delinsT	p.Asp972LeufsTer2	p.D972Lfs*2	ENST00000324856	NM_006015.4	972	GAt/Tt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0024522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	181	873	3	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061833	38061850	+	inframe_deletion	In_Frame_Del	DEL	GGTGTTCATGGTCATGTA	GGTGTTCATGGTCATGTA	-			P-0024522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	135	994	1	ENST00000250448.2:c.139_156delTACATGACCATGAACACC	p.Tyr47_Thr52del	p.Y47_T52del	ENST00000250448	NM_004496.3	47	TACATGACCATGAACACC/-																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0024524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	244	283	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133772	41133772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	114	336	0	ENST00000379561.5:c.1856G>A	p.Arg619Gln	p.R619Q	ENST00000379561	NM_002015.3	619	cGg/cAg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46738381	46738381	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	232	597	1	ENST00000371975.4:c.1282del	p.Leu428Ter	p.L428*	ENST00000371975	NM_003579.3	428	Ctg/tg																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739096	46739096	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	287	633	0	ENST00000371975.4:c.1445C>G	p.Pro482Arg	p.P482R	ENST00000371975	NM_003579.3	482	cCt/cGt																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739111	46739111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	247	615	0	ENST00000371975.4:c.1460C>T	p.Ser487Phe	p.S487F	ENST00000371975	NM_003579.3	487	tCt/tTt																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739135	46739135	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	158	527	0	ENST00000371975.4:c.1484C>T	p.Ser495Leu	p.S495L	ENST00000371975	NM_003579.3	495	tCa/tTa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3860630	3860630	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	199	709	0	ENST00000262367.5:c.949A>G	p.Thr317Ala	p.T317A	ENST00000262367	NM_004380.2	317	Act/Gct																																																																															
STAT3	6774	MSKCC	GRCh37	17	40490763	40490764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	183	613	0	ENST00000264657.5:c.535dup	p.Leu179ProfsTer42	p.L179Pfs*42	ENST00000264657	NM_139276.2	179	ctc/cCtc																																																																															
AR	367	MSKCC	GRCh37	X	66765182	66765182	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023839-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			274	15	131	0	ENST00000374690.3:c.194A>T	p.Gln65Leu	p.Q65L	ENST00000374690	NM_000044.3	65	cAg/cTg																																																																															
MGA	23269	MSKCC	GRCh37	15	42058201	42058201	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0023839-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	29	252	0	ENST00000219905.7:c.7922-1G>A		p.X2641_splice	ENST00000219905	NM_001164273.1	2641																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11170723	11170723	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023839-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			736	64	755	2	ENST00000344626.4:c.4771C>T	p.Arg1591Trp	p.R1591W	ENST00000344626	NM_003072.3	1591	Cgg/Tgg																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128201287	128201287	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023839-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			608	61	607	0	ENST00000265960.3:c.1448A>C	p.Asn483Thr	p.N483T	ENST00000265960	NM_001006617.1	483	aAc/aCc																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0024341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	58	706	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715619	30715619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	30	413	0	ENST00000359013.4:c.1352C>T	p.Ala451Val	p.A451V	ENST00000359013	NM_001024847.2	451	gCt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0024341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	230	930	2	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012465	29012465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	35	683	0	ENST00000282397.4:c.406G>A	p.Val136Ile	p.V136I	ENST00000282397	NM_002019.4	136	Gta/Ata																																																																															
TP53	7157	MSKCC	GRCh37	17	7578250	7578250	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	43	880	0	ENST00000269305.4:c.599delA	p.Asn200IlefsTer47	p.N200Ifs*47	ENST00000269305	NM_001126112.2	200	aAt/at																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730910	40730910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	34	666	3	ENST00000373198.4:c.3625C>T	p.Arg1209Trp	p.R1209W	ENST00000373198	NM_133170.3	1209	Cgg/Tgg																																																																															
TET1	80312	MSKCC	GRCh37	10	70446262	70446262	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	38	631	0	ENST00000373644.4:c.5202C>G	p.Ile1734Met	p.I1734M	ENST00000373644	NM_030625.2	1734	atC/atG																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021251	31021251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	34	648	0	ENST00000375687.4:c.1250G>A	p.Arg417Gln	p.R417Q	ENST00000375687	NM_015338.5	417	cGa/cAa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111420	56111420	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	93	399	0	ENST00000399503.3:c.20A>G	p.Asn7Ser	p.N7S	ENST00000399503	NM_005921.1	7	aAt/aGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	75	661	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793433	18793433	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202143029		P-0024431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	61	446	0	ENST00000266497.5:c.4130G>A	p.Arg1377His	p.R1377H	ENST00000266497		1377	cGt/cAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	222	502	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923738	72923738	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	197	792	2	ENST00000268489.5:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000268489	NM_006885.3	1114	Cga/Tga																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31375049	31375049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	145	737	0	ENST00000328111.2:c.446G>A	p.Arg149Gln	p.R149Q	ENST00000328111	NM_006892.3	149	cGg/cAg																																																																															
NBN	4683	MSKCC	GRCh37	8	90967757	90967757	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	206	345	0	ENST00000265433.3:c.1151T>A	p.Ile384Asn	p.I384N	ENST00000265433	NM_002485.4	384	aTc/aAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	155	713	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MGA	23269	MSKCC	GRCh37	15	42005479	42005479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	182	791	1	ENST00000219905.7:c.3215G>A	p.Arg1072His	p.R1072H	ENST00000219905	NM_001164273.1	1072	cGc/cAc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65313274	65313274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	170	732	1	ENST00000342505.4:c.1840G>A	p.Glu614Lys	p.E614K	ENST00000342505	NM_002227.2	614	Gag/Aag																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279949	18279949	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	634	913	0	ENST00000222254.8:c.2032G>T	p.Gly678Cys	p.G678C	ENST00000222254	NM_005027.3	678	Ggc/Tgc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259408	89259408	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	173	636	2	ENST00000336596.2:c.552A>T	p.Gln184His	p.Q184H	ENST00000336596	NM_005233.5	184	caA/caT																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101911529	101911529	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	90	517	0	ENST00000374994.4:c.1454del	p.Ala485AspfsTer62	p.A485Dfs*62	ENST00000374994	NM_004612.2	485	gCa/ga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0024480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	784	553	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577144	7577146	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0024480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	146	607	1	ENST00000269305.4:c.792_794delACT	p.Leu265del	p.L265del	ENST00000269305	NM_001126112.2	264	ctACTg/ctg																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36988379	36988379	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	135	339	0	ENST00000354822.5:c.274G>T	p.Gly92Cys	p.G92C	ENST00000354822	NM_001079668.2	92	Ggc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289844	15289844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	301	842	0	ENST00000263388.2:c.3710G>A	p.Gly1237Asp	p.G1237D	ENST00000263388	NM_000435.2	1237	gGc/gAc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805979	32805979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	269	833	0	ENST00000374899.4:c.32C>T	p.Ser11Phe	p.S11F	ENST00000374899	NM_018833.2	11	tCc/tTc																																																																															
PARK2	5071	MSKCC	GRCh37	6	163148698	163148698	+	start_lost	Translation_Start_Site	SNP	C	C	G			P-0024480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	73	566	0	ENST00000366898.1:c.3G>C	p.Met1?	p.M1?	ENST00000366898	NM_004562.2	1	atG/atC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577545	7577551	+	protein_altering_variant	In_Frame_Del	DEL	TGCCGCC	TGCCGCC	A			P-0024480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	616	728	0	ENST00000269305.4:c.730_736delinsT	p.Gly244_Met246delinsLeu	p.G244_M246delinsL	ENST00000269305	NM_001126112.2	244	GGCGGCAtg/Ttg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061184	38061187	+	frameshift_variant	Frame_Shift_Del	DEL	CGCA	CGCA	-			P-0024545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	92	753	2	ENST00000250448.2:c.802_805del	p.Cys268ArgfsTer52	p.C268Rfs*52	ENST00000250448	NM_004496.3	268	TGCGag/ag																																																																															
MGA	23269	MSKCC	GRCh37	15	42058426	42058426	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	120	746	1	ENST00000219905.7:c.8146A>T	p.Thr2716Ser	p.T2716S	ENST00000219905	NM_001164273.1	2716	Acg/Tcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	469	922	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0024552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	398	996	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484146	8484146	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	159	794	0	ENST00000356435.5:c.3386C>G	p.Pro1129Arg	p.P1129R	ENST00000356435		1129	cCt/cGt																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123298142	123298142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	413	823	2	ENST00000358487.5:c.712G>A	p.Gly238Arg	p.G238R	ENST00000358487	NM_000141.4	238	Ggg/Agg																																																																															
ATM	472	MSKCC	GRCh37	11	108199878	108199878	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	174	393	0	ENST00000278616.4:c.7220C>A	p.Ser2407Ter	p.S2407*	ENST00000278616	NM_000051.3	2407	tCa/tAa																																																																															
CDK6	1021	MSKCC	GRCh37	7	92354938	92354938	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0024554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	98	355	0	ENST00000265734.4:c.537+2T>C		p.X179_splice	ENST00000265734	NM_001259.6	179																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	79	518	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936103	178936103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	98	609	0	ENST00000263967.3:c.1645G>A	p.Asp549Asn	p.D549N	ENST00000263967	NM_006218.2	549	Gat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178948044	178948044	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	34	286	0	ENST00000263967.3:c.2816A>G	p.Asp939Gly	p.D939G	ENST00000263967	NM_006218.2	939	gAt/gGt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252955	36252955	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	66	424	0	ENST00000300305.3:c.407A>G	p.Asn136Ser	p.N136S	ENST00000300305		136	aAt/aGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	35	460	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0024423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	118	552	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0024423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	11	343	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0024423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	11	181	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	86	432	1	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																															
ALK	238	MSKCC	GRCh37	2	29446329	29446329	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	113	491	0	ENST00000389048.3:c.3238C>G	p.Leu1080Val	p.L1080V	ENST00000389048	NM_004304.4	1080	Ctg/Gtg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739910	145739910	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0024423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	32	350	0	ENST00000428558.2:c.1621-1G>T		p.X541_splice	ENST00000428558	NM_004260.3	541																																																																																
CIC	23152	MSKCC	GRCh37	19	42796331	42796331	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	359	983	1	ENST00000575354.2:c.2980C>T	p.Gln994Ter	p.Q994*	ENST00000575354	NM_015125.3	994	Cag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257338	16257338	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	241	587	0	ENST00000375759.3:c.4603A>G	p.Ile1535Val	p.I1535V	ENST00000375759	NM_015001.2	1535	Atc/Gtc																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0024428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	52	155	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579310	7579310	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0024428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	297	366	0	ENST00000269305.4:c.375+2T>C		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
APC	324	MSKCC	GRCh37	5	112174266	112174267	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	119	268	0	ENST00000257430.4:c.2976dupT	p.Lys993Ter	p.K993*	ENST00000257430	NM_000038.5	992	agt/agTt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982956	201982956	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0024428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	312	451	0	ENST00000359651.3:c.806-1G>A		p.X269_splice	ENST00000359651		269																																																																																
INPP4A	3631	MSKCC	GRCh37	2	99136563	99136563	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	251	510	0	ENST00000074304.5:c.52C>T	p.Gln18Ter	p.Q18*	ENST00000074304	NM_001134224.1	18	Cag/Tag																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72897423	72897424	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0024428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	216	296	0	ENST00000325599.8:c.68dup	p.Tyr23Ter	p.Y23*	ENST00000325599	NM_018130.2	23	tac/taAc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372145	55372145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	179	435	0	ENST00000297316.4:c.835G>A	p.Ala279Thr	p.A279T	ENST00000297316	NM_022454.3	279	Gcg/Acg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	110	565	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0024432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	85	399	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
CBFB	865	MSKCC	GRCh37	16	67100622	67100622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	80	459	0	ENST00000412916.2:c.320G>A	p.Cys107Tyr	p.C107Y	ENST00000412916		107	tGt/tAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151856142	151856142	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	78	347	1	ENST00000262189.6:c.11476C>T	p.Gln3826Ter	p.Q3826*	ENST00000262189	NM_170606.2	3826	Caa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112162804	112162804	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0023903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	18	331	0	ENST00000257430.4:c.1409-1G>A		p.X470_splice	ENST00000257430	NM_000038.5	470																																																																																
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	23	560	0	ENST00000269305.4:c.526T>G	p.Cys176Gly	p.C176G	ENST00000269305	NM_001126112.2	176	Tgc/Ggc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356200	66356200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	10	525	0	ENST00000273854.3:c.1297G>A	p.Ala433Thr	p.A433T	ENST00000273854	NM_004439.5	433	Gct/Act																																																																															
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	170	685	2	ENST00000269305.4:c.434T>C	p.Leu145Pro	p.L145P	ENST00000269305	NM_001126112.2	145	cTg/cCg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981803	201981803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	101	611	0	ENST00000359651.3:c.514G>T	p.Asp172Tyr	p.D172Y	ENST00000359651		172	Gac/Tac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653785	89653785	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	52	298	0	ENST00000371953.3:c.83T>G	p.Ile28Ser	p.I28S	ENST00000371953	NM_000314.4	28	aTt/aGt																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719561	61719561	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	32	439	0	ENST00000401558.2:c.1622C>A	p.Ala541Glu	p.A541E	ENST00000401558	NM_003400.3	541	gCa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112173887	112173887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	80	294	0	ENST00000257430.4:c.2596G>A	p.Ala866Thr	p.A866T	ENST00000257430	NM_000038.5	866	Gca/Aca																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0024370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	153	617	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257570	19257570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	105	626	1	ENST00000162023.5:c.656G>A	p.Arg219Gln	p.R219Q	ENST00000162023		219	cGa/cAa																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245820	5245820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	147	759	2	ENST00000357368.4:c.955G>A	p.Val319Ile	p.V319I	ENST00000357368	NM_002850.3	319	Gtc/Atc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103524589	103524589	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	37	268	1	ENST00000355739.4:c.2720C>G	p.Pro907Arg	p.P907R	ENST00000355739	NM_000123.3	907	cCt/cGt																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45858101	45858101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	39	503	3	ENST00000391945.4:c.1552C>T	p.Arg518Trp	p.R518W	ENST00000391945	NM_000400.3	518	Cgg/Tgg																																																																															
MET	4233	MSKCC	GRCh37	7	116411853	116411877	+	intron_variant	Intron	DEL	GGCCCATGATAGCCGTCTTTAACAA	GGCCCATGATAGCCGTCTTTAACAA	-			P-0024401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	222	812	0	ENST00000397752.3:c.2888-49_2888-25del		p.*963*	ENST00000397752	NM_000245.2																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0024479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	173	460	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154733	2154853	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCAGGACCCTCACCGGAAGCACGGTCGGAGGGGTCGACACGTCCCTCTCGGACTTGGCGGGGGTAGCACAGTACGTCTCCAGGAGGGCCAGGTCACAGCTGCGGAAACAGCACTCCTCAA	CCCAGGACCCTCACCGGAAGCACGGTCGGAGGGGTCGACACGTCCCTCTCGGACTTGGCGGGGGTAGCACAGTACGTCTCCAGGAGGGCCAGGTCACAGCTGCGGAAACAGCACTCCTCAA	-			P-0024479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	176	753	0	ENST00000434045.2:c.368_474+14del		p.X123_splice	ENST00000434045	NM_001127598.1	123																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0024481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	155	633	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098800	178098800	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	222	878	0	ENST00000397062.3:c.245A>G	p.Glu82Gly	p.E82G	ENST00000397062	NM_006164.4	82	gAa/gGa																																																																															
INSR	3643	MSKCC	GRCh37	19	7142848	7142848	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	139	607	1	ENST00000302850.5:c.2521A>T	p.Ser841Cys	p.S841C	ENST00000302850	NM_000208.2	841	Agt/Tgt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0024482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	61	609	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0024482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	17	724	2	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031885	26031885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	12	245	0	ENST00000244661.2:c.404G>A	p.Arg135Lys	p.R135K	ENST00000244661	NM_003537.3	135	aGa/aAa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117687287	117687287	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	29	479	0	ENST00000368508.3:c.2764A>G	p.Arg922Gly	p.R922G	ENST00000368508	NM_002944.2	922	Aga/Gga																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0024483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	149	388	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
NF1	4763	MSKCC	GRCh37	17	29527502	29527503	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0024483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	138	737	0	ENST00000358273.4:c.952_953delGA	p.Glu318LysfsTer11	p.E318Kfs*11	ENST00000358273	NM_001042492.2	317	acAGaa/acaa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522590	176522590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	142	922	2	ENST00000292408.4:c.1687C>T	p.Arg563Trp	p.R563W	ENST00000292408	NM_213647.1	563	Cgg/Tgg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740204	162740204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	327	729	1	ENST00000367921.3:c.1406C>T	p.Ser469Leu	p.S469L	ENST00000367921	NM_006182.2	469	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	200	688	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0024286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	441	797	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0024286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	118	247	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852409	63852409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	328	635	0	ENST00000279873.7:c.3187G>A	p.Gly1063Arg	p.G1063R	ENST00000279873	NM_032199.2	1063	Ggg/Agg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120612018	120612018	+	start_lost	Translation_Start_Site	SNP	C	C	G	rs149632008		P-0024286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	12	90	0	ENST00000256646.2:c.3G>C	p.Met1?	p.M1?	ENST00000256646	NM_024408.3	1	atG/atC																																																																															
ALK	238	MSKCC	GRCh37	2	29416332	29416332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	163	873	1	ENST00000389048.3:c.4621G>T	p.Val1541Phe	p.V1541F	ENST00000389048	NM_004304.4	1541	Gtc/Ttc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99181178	99181178	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	149	614	0	ENST00000074304.5:c.2119T>G	p.Tyr707Asp	p.Y707D	ENST00000074304	NM_001134224.1	707	Tac/Gac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	115	542	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220701	1220701	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	96	594	1	ENST00000326873.7:c.719C>A	p.Ser240Ter	p.S240*	ENST00000326873	NM_000455.4	240	tCg/tAg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502264	186502264	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0024297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	55	264	0	ENST00000323963.5:c.73G>C	p.Glu25Gln	p.E25Q	ENST00000323963		25	Gag/Cag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268927	55268927	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	65	643	0	ENST00000275493.2:c.2993A>G	p.Tyr998Cys	p.Y998C	ENST00000275493	NM_005228.3	998	tAc/tGc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600531	10600531	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0024297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	86	441	0	ENST00000171111.5:c.1326-2A>T		p.X442_splice	ENST00000171111	NM_203500.1	442																																																																																
APC	324	MSKCC	GRCh37	5	112178286	112178286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	38	411	0	ENST00000257430.4:c.6995G>T	p.Gly2332Val	p.G2332V	ENST00000257430	NM_000038.5	2332	gGt/gTt																																																																															
PREX2	80243	MSKCC	GRCh37	8	69032484	69032484	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	61	580	0	ENST00000288368.4:c.3558C>A	p.Asp1186Glu	p.D1186E	ENST00000288368	NM_024870.2	1186	gaC/gaA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	311	516	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	301	511	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0024453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	98	446	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	175	684	0	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	93	629	1	ENST00000269305.4:c.596G>A	p.Gly199Glu	p.G199E	ENST00000269305	NM_001126112.2	199	gGa/gAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114910883	114910883	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0024453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	113	454	4	ENST00000543371.1:c.1001+1G>A		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																																
SPEN	23013	MSKCC	GRCh37	1	16258310	16258310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	62	525	2	ENST00000375759.3:c.5575C>T	p.Arg1859Trp	p.R1859W	ENST00000375759	NM_015001.2	1859	Cgg/Tgg																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770125	56770125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	57	416	0	ENST00000337432.4:c.121G>A	p.Val41Met	p.V41M	ENST00000337432	NM_058216.2	41	Gtg/Atg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30664727	30664727	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	20	395	0	ENST00000359013.4:c.131G>T	p.Cys44Phe	p.C44F	ENST00000359013	NM_001024847.2	44	tGc/tTc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066702	94066702	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	55	531	0	ENST00000369303.4:c.1057C>A	p.Pro353Thr	p.P353T	ENST00000369303	NM_004440.3	353	Cct/Act																																																																															
SESN1	27244	MSKCC	GRCh37	6	109322612	109322612	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	42	607	0	ENST00000436639.2:c.425A>G	p.Asn142Ser	p.N142S	ENST00000436639	NM_014454.2	142	aAc/aGc																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38173530	38173530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	35	541	0	ENST00000317025.8:c.1886C>T	p.Pro629Leu	p.P629L	ENST00000317025	NM_023034.1	629	cCt/cTt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969427	44969427	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	43	312	0	ENST00000377967.4:c.4109A>G	p.Glu1370Gly	p.E1370G	ENST00000377967	NM_021140.2	1370	gAa/gGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	64	694	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0024491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	28	361	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	61	915	1	ENST00000269305.4:c.880delG	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	294	Gag/ag																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911599	114911600	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	65	693	0	ENST00000543371.1:c.1118dup	p.Leu374ValfsTer49	p.L374Vfs*49	ENST00000543371	NM_001198531.1	373	acg/aCcg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933971	39933971	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	57	844	0	ENST00000378444.4:c.628C>A	p.Pro210Thr	p.P210T	ENST00000378444	NM_001123385.1	210	Cca/Aca																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412196	63412196	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0024491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	69	1048	0	ENST00000330258.3:c.971C>G	p.Ser324Ter	p.S324*	ENST00000330258	NM_152424.3	324	tCa/tGa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0024493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	19	731	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0024493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	39	870	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39074470	39074470	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	18	561	0	ENST00000357387.3:c.10A>G	p.Ile4Val	p.I4V	ENST00000357387	NM_152756.3	4	Atc/Gtc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971098	21971099	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	18	568	0	ENST00000304494.5:c.259dup	p.Arg87ProfsTer33	p.R87Pfs*33	ENST00000304494	NM_000077.4	87	cgg/cCgg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921447	39921451	+	frameshift_variant	Frame_Shift_Del	DEL	ACAAT	ACAAT	-			P-0024493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	23	357	0	ENST00000378444.4:c.4369_4373del	p.Ile1457GlnfsTer2	p.I1457Qfs*2	ENST00000378444	NM_001123385.1	1457	ATTGTc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	91	828	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0024494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	29	555	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398123121		P-0024494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	27	336	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112174484	112174484	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	21	390	0	ENST00000257430.4:c.3193C>T	p.Gln1065Ter	p.Q1065*	ENST00000257430	NM_000038.5	1065	Caa/Taa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849819	156849819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	28	700	1	ENST00000524377.1:c.2075G>A	p.Arg692His	p.R692H	ENST00000524377	NM_002529.3	692	cGc/cAc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400939	72400939	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	29	605	0	ENST00000357731.5:c.232A>G	p.Ile78Val	p.I78V	ENST00000357731	NM_173808.2	78	Att/Gtt																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873719	35873720	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAGA			P-0024494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	49	859	0	ENST00000216797.5:c.131_132insTCTA	p.Gln44HisfsTer43	p.Q44Hfs*43	ENST00000216797	NM_020529.2	44	cag/caTCTAg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477092	67477092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	69	732	0	ENST00000327367.4:c.899G>T	p.Gly300Val	p.G300V	ENST00000327367	NM_005902.3	300	gGa/gTa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0024498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	144	421	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462998	120462998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	227	544	2	ENST00000256646.2:c.5333C>T	p.Ser1778Leu	p.S1778L	ENST00000256646	NM_024408.3	1778	tCa/tTa																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94189447	94189447	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	191	749	0	ENST00000323929.3:c.1558C>G	p.Arg520Gly	p.R520G	ENST00000323929	NM_005591.3	520	Cgt/Ggt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396232	396232	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	291	840	0	ENST00000262320.3:c.794del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	265	gGa/ga																																																																															
NF1	4763	MSKCC	GRCh37	17	29508735	29508735	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	397	716	0	ENST00000358273.4:c.662G>A	p.Trp221Ter	p.W221*	ENST00000358273	NM_001042492.2	221	tGg/tAg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513276	44513276	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	341	839	0	ENST00000291552.4:c.659G>T	p.Gly220Val	p.G220V	ENST00000291552	NM_006758.2	220	gGt/gTt																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149495388	149495388	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	309	962	0	ENST00000261799.4:c.3259del	p.Glu1087AsnfsTer45	p.E1087Nfs*45	ENST00000261799	NM_002609.3	1087	Gaa/aa																																																																															
MED12	9968	MSKCC	GRCh37	X	70352756	70352756	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	364	429	0	ENST00000374080.3:c.4477G>T	p.Asp1493Tyr	p.D1493Y	ENST00000374080		1493	Gat/Tat																																																																															
ATRX	546	MSKCC	GRCh37	X	76909590	76909590	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0024498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	136	387	0	ENST00000373344.5:c.4315A>T	p.Lys1439Ter	p.K1439*	ENST00000373344	NM_000489.3	1439	Aag/Tag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045559	47045560	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	T			P-0024498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	207	304	0	ENST00000329236.7:c.2292_2293delinsT	p.Thr765GlnfsTer4	p.T765Qfs*4	ENST00000329236	NM_001204466.1	764	tcCAca/tcTca																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591104	67591115	+	inframe_deletion	In_Frame_Del	DEL	TTAAACCAGACC	TTAAACCAGACC	-			P-0024557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	41	331	0	ENST00000274335.5:c.1700_1711del	p.Lys567_Leu570del	p.K567_L570del	ENST00000274335		566	aTTAAACCAGACCtt/att																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692839	89692839	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	19	219	0	ENST00000371953.3:c.323T>G	p.Leu108Arg	p.L108R	ENST00000371953	NM_000314.4	108	cTt/cGt																																																																															
MSH3	4437	MSKCC	GRCh37	5	80021291	80021291	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	62	576	2	ENST00000265081.6:c.1360C>T	p.Arg454Ter	p.R454*	ENST00000265081	NM_002439.4	454	Cga/Tga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189386	56189386	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	50	554	0	ENST00000399503.3:c.4418del	p.Ile1473ThrfsTer17	p.I1473Tfs*17	ENST00000399503	NM_005921.1	1473	aTc/ac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900035	151900036	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0024557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	92	628	0	ENST00000262189.6:c.4075_4076del	p.Phe1359ProfsTer18	p.F1359Pfs*18	ENST00000262189	NM_170606.2	1359	TTc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7577567	7577581	+	frameshift_variant	Frame_Shift_Del	DEL	ACACATGTAGTTGTA	ACACATGTAGTTGTA	T			P-0024557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	57	662	0	ENST00000269305.4:c.700_714delinsA	p.Tyr234LysfsTer25	p.Y234Kfs*25	ENST00000269305	NM_001126112.2	234	TACAACTACATGTGT/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0024306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	175	712	1	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0024306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	81	602	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
NF1	4763	MSKCC	GRCh37	17	29588876	29588876	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0024306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	48	327	0	ENST00000358273.4:c.4724+1G>T		p.X1575_splice	ENST00000358273	NM_001042492.2	1575																																																																																
DICER1	23405	MSKCC	GRCh37	14	95570448	95570448	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	37	345	0	ENST00000343455.3:c.3285C>G	p.Asp1095Glu	p.D1095E	ENST00000343455	NM_177438.2	1095	gaC/gaG																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991674	72991674	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	31	362	0	ENST00000268489.5:c.2371G>T	p.Gly791Trp	p.G791W	ENST00000268489	NM_006885.3	791	Ggg/Tgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599958	10599958	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	107	702	1	ENST00000171111.5:c.1618G>T	p.Glu540Ter	p.E540*	ENST00000171111	NM_203500.1	540	Gaa/Taa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71015209	71015209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0024306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	30	250	0	ENST00000318789.4:c.1723-2A>T		p.X575_splice	ENST00000318789	NM_032682.5	575																																																																																
KDR	3791	MSKCC	GRCh37	4	55976840	55976840	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	61	526	0	ENST00000263923.4:c.1072C>G	p.Pro358Ala	p.P358A	ENST00000263923	NM_002253.2	358	Cca/Gca																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971092	21971092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	73	362	0	ENST00000304494.5:c.266G>A	p.Gly89Asp	p.G89D	ENST00000304494	NM_000077.4	89	gGc/gAc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907097	101907097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	64	566	1	ENST00000374994.4:c.1057G>A	p.Gly353Arg	p.G353R	ENST00000374994	NM_004612.2	353	Gga/Aga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412971	63412971	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1221	139	815	1	ENST00000330258.3:c.196A>T	p.Ile66Phe	p.I66F	ENST00000330258	NM_152424.3	66	Atc/Ttc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0024333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	221	830	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	54	551	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0024334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	38	761	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43699645	43699645	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	51	852	0	ENST00000382044.4:c.5870T>C	p.Ile1957Thr	p.I1957T	ENST00000382044	NM_001141980.1	1957	aTt/aCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	25	712	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0024382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	323	674	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
RB1	5925	MSKCC	GRCh37	13	48953760	48953760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913302		P-0024382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	121	280	0	ENST00000267163.4:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000267163	NM_000321.2	455	Cga/Tga																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061602	38061602	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	47	239	0	ENST00000250448.2:c.387del	p.Tyr130ThrfsTer5	p.Y130Tfs*5	ENST00000250448	NM_004496.3	129	ccC/cc																																																																															
RYBP	23429	MSKCC	GRCh37	3	72428429	72428430	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	148	622	0	ENST00000477973.2:c.572dup	p.Thr192AsnfsTer14	p.T192Nfs*14	ENST00000477973	NM_012234.5	192	acc/aAcc																																																																															
APC	324	MSKCC	GRCh37	5	112176748	112176748	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	44	294	0	ENST00000257430.4:c.5458del	p.Ser1820ProfsTer43	p.S1820Pfs*43	ENST00000257430	NM_000038.5	1819	aaT/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	322	668	5	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112174152	112174152	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	65	429	0	ENST00000257430.4:c.2861T>A	p.Leu954Ter	p.L954*	ENST00000257430	NM_000038.5	954	tTa/tAa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710994	114710994	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	51	386	0	ENST00000543371.1:c.220del	p.Ser74ValfsTer34	p.S74Vfs*34	ENST00000543371	NM_001198531.1	73	gAa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7579361	7579361	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	231	699	0	ENST00000269305.4:c.326T>C	p.Phe109Ser	p.F109S	ENST00000269305	NM_001126112.2	109	tTc/tCc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212248	5212248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	226	569	0	ENST00000357368.4:c.4783C>T	p.Arg1595Cys	p.R1595C	ENST00000357368	NM_002850.3	1595	Cgc/Tgc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259068	16259068	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	100	537	0	ENST00000375759.3:c.6333G>C	p.Glu2111Asp	p.E2111D	ENST00000375759	NM_015001.2	2111	gaG/gaC																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15965041	15965041	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	85	515	0	ENST00000268712.3:c.5555A>C	p.Asn1852Thr	p.N1852T	ENST00000268712	NM_006311.3	1852	aAt/aCt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	125	412	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178342	56178343	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	126	324	0	ENST00000399503.3:c.3316dup	p.Ile1106AsnfsTer4	p.I1106Nfs*4	ENST00000399503	NM_005921.1	1105	-/A																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179455	56179457	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0024500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	56	448	0	ENST00000399503.3:c.3770_3772del	p.Cys1257del	p.C1257del	ENST00000399503	NM_005921.1	1256	tcTTGt/tct																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101867538	101867540	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0024501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	10	41	0	ENST00000374994.4:c.76_78delGCG	p.Ala26del	p.A26del	ENST00000374994	NM_004612.2	17	ctGGCg/ctg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0021321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	1260	756	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593491	48593494	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0021321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	236	425	0	ENST00000342988.3:c.1245_1248del	p.Asp415GlufsTer20	p.D415Efs*20	ENST00000342988	NM_005359.5	414	ttAGAC/tt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578224	7578224	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0021321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	443	864	0	ENST00000269305.4:c.625A>T	p.Arg209Ter	p.R209*	ENST00000269305	NM_001126112.2	209	Aga/Tga																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813599	50813599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	351	634	0	ENST00000398568.2:c.1153C>T	p.Leu385Phe	p.L385F	ENST00000398568	NM_001042412.1	385	Ctt/Ttt																																																																															
SRC	6714	MSKCC	GRCh37	20	36030862	36030862	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	162	528	0	ENST00000358208.4:c.1141G>A	p.Glu381Lys	p.E381K	ENST00000358208		381	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974691	21974732	+	inframe_deletion	In_Frame_Del	DEL	GACCGTAACTATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCA	GACCGTAACTATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCA	-			P-0021321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	200	559	0	ENST00000304494.5:c.95_136del	p.Leu32_Gly45del	p.L32_G45del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCCCAACGCACCGAATAGTTACGGTCgg/cgg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44820620	44820632	+	frameshift_variant	Frame_Shift_Del	DEL	TGGAAGATTATCC	TGGAAGATTATCC	-			P-0021321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	307	721	0	ENST00000377967.4:c.317_329del	p.Leu106Ter	p.L106*	ENST00000377967	NM_021140.2	106	tTGGAAGATTATCCa/ta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	51	889	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579533	7579533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	51	1086	0	ENST00000269305.4:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000269305	NM_001126112.2	52	Caa/Taa																																																																															
RB1	5925	MSKCC	GRCh37	13	49050909	49050909	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	64	675	0	ENST00000267163.4:c.2593G>T	p.Gly865Ter	p.G865*	ENST00000267163	NM_000321.2	865	Gga/Tga																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965103	25965103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	35	710	0	ENST00000435504.4:c.4103C>T	p.Pro1368Leu	p.P1368L	ENST00000435504		1368	cCt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	176	664	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	560	723	0	ENST00000171111.5:c.959G>T	p.Arg320Leu	p.R320L	ENST00000171111	NM_203500.1	320	cGg/cTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435378	110435378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1753	681	781	0	ENST00000375856.3:c.3023C>T	p.Pro1008Leu	p.P1008L	ENST00000375856	NM_003749.2	1008	cCc/cTc																																																																															
MGA	23269	MSKCC	GRCh37	15	42042598	42042598	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0022671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	44	509	1	ENST00000219905.7:c.6793A>T	p.Arg2265Ter	p.R2265*	ENST00000219905	NM_001164273.1	2265	Aga/Tga																																																																															
BLM	641	MSKCC	GRCh37	15	91298157	91298157	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	27	293	0	ENST00000355112.3:c.1076C>A	p.Thr359Lys	p.T359K	ENST00000355112	NM_000057.2	359	aCa/aAa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3817720	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0022671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	83	469	1	ENST00000262367.5:c.3250dupA	p.Ile1084AsnfsTer3	p.I1084Nfs*3	ENST00000262367	NM_004380.2	1084	atc/aAtc																																																																															
STK11	6794	MSKCC	GRCh37	19	1223021	1223022	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	327	678	0	ENST00000326873.7:c.959dup	p.Pro321AlafsTer39	p.P321Afs*39	ENST00000326873	NM_000455.4	320	gtg/gTtg																																																																															
CALR	811	MSKCC	GRCh37	19	13051264	13051264	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0022671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	69	332	1	ENST00000316448.5:c.700G>A	p.Glu234Lys	p.E234K	ENST00000316448	NM_004343.3	234	Gag/Aag																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091814	29091814	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	73	671	0	ENST00000328354.6:c.1143G>C	p.Met381Ile	p.M381I	ENST00000328354	NM_007194.3	381	atG/atC																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015003	37015003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	90	750	0	ENST00000358127.4:c.401C>T	p.Ser134Phe	p.S134F	ENST00000358127	NM_001280556.1	134	tCc/tTc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600369	10600369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	50	1138	1	ENST00000171111.5:c.1486G>A	p.Glu496Lys	p.E496K	ENST00000171111	NM_203500.1	496	Gag/Aag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137727	64137727	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	62	1204	2	ENST00000334205.4:c.1828C>T	p.Gln610Ter	p.Q610*	ENST00000334205	NM_003942.2	610	Cag/Tag																																																																															
CDH1	999	MSKCC	GRCh37	16	68772315	68772315	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0024336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	353	984	1	ENST00000261769.5:c.163+1G>T		p.X55_splice	ENST00000261769	NM_004360.3	55																																																																																
NCOA3	8202	MSKCC	GRCh37	20	46265342	46265342	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	107	519	0	ENST00000371998.3:c.2212C>G	p.Leu738Val	p.L738V	ENST00000371998		738	Ctt/Gtt																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62319396	62319396	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1189	204	1137	0	ENST00000508582.2:c.1660G>C	p.Asp554His	p.D554H	ENST00000508582		554	Gac/Cac																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45655395	45655395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	63	1125	1	ENST00000407780.3:c.457G>A	p.Glu153Lys	p.E153K	ENST00000407780	NM_001283052.1	153	Gag/Aag																																																																															
ATR	545	MSKCC	GRCh37	3	142178098	142178098	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	176	601	0	ENST00000350721.4:c.7320del	p.Leu2441Ter	p.L2441*	ENST00000350721	NM_001184.3	2440	ttT/tt																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430992	181430992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	55	978	2	ENST00000325404.1:c.844G>A	p.Glu282Lys	p.E282K	ENST00000325404	NM_003106.3	282	Gag/Aag																																																																															
MSH3	4437	MSKCC	GRCh37	5	80083442	80083442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	166	1210	2	ENST00000265081.6:c.2494G>T	p.Asp832Tyr	p.D832Y	ENST00000265081	NM_002439.4	832	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	43	766	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578277	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0024302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	71	754	0	ENST00000269305.4:c.572_574del	p.Pro191del	p.P191del	ENST00000269305	NM_001126112.2	191	cCTCag/cag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932980	39932980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	67	750	0	ENST00000378444.4:c.1619G>A	p.Arg540Gln	p.R540Q	ENST00000378444	NM_001123385.1	540	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	39	688	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827927	40827927	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs536150112		P-0024302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	223	659	0	ENST00000373198.4:c.2501G>A	p.Arg834His	p.R834H	ENST00000373198	NM_133170.3	834	cGc/cAc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593520	48593520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	24	300	0	ENST00000342988.3:c.1271A>T	p.Asp424Val	p.D424V	ENST00000342988	NM_005359.5	424	gAt/gTt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11301617	11301617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	76	819	0	ENST00000361445.4:c.1534G>C	p.Gly512Arg	p.G512R	ENST00000361445	NM_004958.3	512	Gga/Cga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911953	32911953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	37	667	0	ENST00000380152.3:c.3461C>T	p.Thr1154Ile	p.T1154I	ENST00000380152		1154	aCc/aTc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247367	153247368	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0024302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	17	352	0	ENST00000281708.4:c.1434_1435del	p.Asp480CysfsTer4	p.D480Cfs*4	ENST00000281708	NM_033632.3	478	tcTCga/tcga																																																																															
APC	324	MSKCC	GRCh37	5	112175218	112175219	+	stop_gained	Nonsense_Mutation	DNP	AA	AA	TT			P-0024302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	25	271	2	ENST00000257430.4:c.3927_3928inv	p.Glu1309_Lys1310delinsAspTer	p.E1309_K1310delinsD*	ENST00000257430	NM_000038.5	1309	gaAAag/gaTTag																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128432165	128432165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	60	694	1	ENST00000265960.3:c.281G>A	p.Arg94Gln	p.R94Q	ENST00000265960	NM_001006617.1	94	cGa/cAa																																																																															
STK11	6794	MSKCC	GRCh37	19	1220443	1220443	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	44	839	0	ENST00000326873.7:c.536C>G	p.Pro179Arg	p.P179R	ENST00000326873	NM_000455.4	179	cCg/cGg																																																																															
ATRX	546	MSKCC	GRCh37	X	76888736	76888736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	40	691	2	ENST00000373344.5:c.5093G>A	p.Arg1698Gln	p.R1698Q	ENST00000373344	NM_000489.3	1698	cGg/cAg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602785	10602785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	57	855	1	ENST00000171111.5:c.793C>T	p.Gln265Ter	p.Q265*	ENST00000171111	NM_203500.1	265	Cag/Tag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18446889	18446889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	34	565	0	ENST00000266497.5:c.974A>G	p.Asp325Gly	p.D325G	ENST00000266497		325	gAc/gGc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728722	190728722	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	29	403	0	ENST00000441310.2:c.2110A>G	p.Lys704Glu	p.K704E	ENST00000441310	NM_000534.4	704	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0023943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	288	887	3	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	93	424	2	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																															
APC	324	MSKCC	GRCh37	5	112174253	112174253	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	104	530	4	ENST00000257430.4:c.2962G>T	p.Glu988Ter	p.E988*	ENST00000257430	NM_000038.5	988	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175569	112175569	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	94	413	0	ENST00000257430.4:c.4280del	p.Pro1427LeufsTer46	p.P1427Lfs*46	ENST00000257430	NM_000038.5	1426	agC/ag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	100	535	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0023944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	109	866	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0023947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	429	726	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
RB1	5925	MSKCC	GRCh37	13	49037952	49037953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCCTCATGCTGTTCAG			P-0023947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	302	617	1	ENST00000267163.4:c.2193_2208dup	p.Glu737SerfsTer19	p.E737Sfs*19	ENST00000267163	NM_000321.2	731	ctt/ctTCCTCATGCTGTTCAGt																																																																															
CRKL	1399	MSKCC	GRCh37	22	21288255	21288259	+	frameshift_variant	Frame_Shift_Del	DEL	ATGGC	ATGGC	TTGG			P-0023947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2236	449	871	4	ENST00000354336.3:c.500_504delinsTTGG	p.Asp167ValfsTer6	p.D167Vfs*6	ENST00000354336	NM_005207.3	167	gATGGC/gTTGG																																																																															
ATR	545	MSKCC	GRCh37	3	142266753	142266753	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0023947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	167	549	0	ENST00000350721.4:c.3172-1G>C		p.X1058_splice	ENST00000350721	NM_001184.3	1058																																																																																
KDR	3791	MSKCC	GRCh37	4	55968538	55968538	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	147	591	0	ENST00000263923.4:c.2125G>C	p.Glu709Gln	p.E709Q	ENST00000263923	NM_002253.2	709	Gaa/Caa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513195	106513195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	124	422	1	ENST00000359195.3:c.2099G>T	p.Arg700Ile	p.R700I	ENST00000359195	NM_002649.2	700	aGa/aTa																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739329	145739329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	160	730	0	ENST00000428558.2:c.2041G>T	p.Asp681Tyr	p.D681Y	ENST00000428558	NM_004260.3	681	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	186	745	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0023952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	91	234	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872498	136872498	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	202	348	1	ENST00000241393.3:c.1000C>T	p.Arg334Ter	p.R334*	ENST00000241393	NM_003467.2	334	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114903759	114903760	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0023952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	151	541	0	ENST00000543371.1:c.763_764del	p.His255SerfsTer72	p.H255Sfs*72	ENST00000543371	NM_001198531.1	255	CAt/t																																																																															
APC	324	MSKCC	GRCh37	5	112174759	112174760	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0023952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	111	402	0	ENST00000257430.4:c.3473_3474del	p.Arg1158ThrfsTer5	p.R1158Tfs*5	ENST00000257430	NM_000038.5	1156	gaAGag/gaag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0023953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	123	696	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121610	2121610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	120	647	0	ENST00000219476.3:c.1939G>A	p.Asp647Asn	p.D647N	ENST00000219476	NM_000548.3	647	Gac/Aac																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206650051	206650051	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	118	736	1	ENST00000367120.3:c.571C>T	p.Arg191Ter	p.R191*	ENST00000367120	NM_014002.3	191	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	698	783	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5211652	5211652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	180	808	2	ENST00000357368.4:c.5183G>A	p.Arg1728Gln	p.R1728Q	ENST00000357368	NM_002850.3	1728	cGg/cAg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5072577	5072577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1902	117	663	0	ENST00000381652.3:c.1727C>T	p.Thr576Ile	p.T576I	ENST00000381652	NM_004972.3	576	aCa/aTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	176	694	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879854	37879854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	416	961	0	ENST00000269571.5:c.2149G>A	p.Glu717Lys	p.E717K	ENST00000269571		717	Gag/Aag																																																																															
ELF3	1999	MSKCC	GRCh37	1	201980383	201980394	+	inframe_deletion	In_Frame_Del	DEL	TGGTACTGACCC	TGGTACTGACCC	-			P-0024107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	184	1156	2	ENST00000359651.3:c.121_132del	p.Val41_Leu44del	p.V41_L44del	ENST00000359651		40	tTGGTACTGACCCtg/ttg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112590	115112590	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	182	983	1	ENST00000257566.3:c.1150G>T	p.Glu384Ter	p.E384*	ENST00000257566	NM_016569.3	384	Gag/Tag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061349	38061349	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	222	881	0	ENST00000250448.2:c.640T>A	p.Trp214Arg	p.W214R	ENST00000250448	NM_004496.3	214	Tgg/Agg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881329	37881329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	430	984	0	ENST00000269571.5:c.2521C>A	p.Leu841Ile	p.L841I	ENST00000269571		841	Ctc/Atc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259171	36259171	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	148	767	0	ENST00000300305.3:c.320G>T	p.Arg107Leu	p.R107L	ENST00000300305		107	cGc/cTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55220349	55220349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	280	876	4	ENST00000275493.2:c.739G>T	p.Asp247Tyr	p.D247Y	ENST00000275493	NM_005228.3	247	Gac/Tac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860665	151860690	+	frameshift_variant	Frame_Shift_Del	DEL	GTAAACTGGGCATTCTAACAGGGCTA	GTAAACTGGGCATTCTAACAGGGCTA	-			P-0024107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	293	841	0	ENST00000262189.6:c.9972_9997del	p.Ser3325TrpfsTer17	p.S3325Wfs*17	ENST00000262189	NM_170606.2	3324	acTAGCCCTGTTAGAATGCCCAGTTTACct/acct																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	130	838	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0024131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	180	624	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717615	89717615	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	27	496	0	ENST00000371953.3:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000371953	NM_000314.4	214	Cag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42041734	42041734	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	82	520	0	ENST00000219905.7:c.5929C>T	p.Gln1977Ter	p.Q1977*	ENST00000219905	NM_001164273.1	1977	Cag/Tag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509627	106509627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	39	572	1	ENST00000359195.3:c.1621G>A	p.Asp541Asn	p.D541N	ENST00000359195	NM_002649.2	541	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0024132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	327	872	1	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458120	120458120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	212	686	1	ENST00000256646.2:c.7225C>T	p.Gln2409Ter	p.Q2409*	ENST00000256646	NM_024408.3	2409	Cag/Tag																																																																															
NF2	4771	MSKCC	GRCh37	22	30038260	30038260	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1185977513		P-0024132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	110	628	1	ENST00000338641.4:c.433G>A	p.Ala145Thr	p.A145T	ENST00000338641	NM_000268.3	145	Gcc/Acc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78599548	78599548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	127	630	2	ENST00000306801.3:c.220G>A	p.Asp74Asn	p.D74N	ENST00000306801	NM_020761.2	74	Gat/Aat																																																																															
ABL1	25	MSKCC	GRCh37	9	133759398	133759398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	85	792	0	ENST00000318560.5:c.1721G>A	p.Arg574Gln	p.R574Q	ENST00000318560	NM_005157.4	574	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	110	666	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
AKT3	10000	MSKCC	GRCh37	1	243716070	243716070	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	98	813	0	ENST00000263826.5:c.1124C>A	p.Ser375Ter	p.S375*	ENST00000263826	NM_005465.4	375	tCa/tAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436109	49436109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	24	335	0	ENST00000301067.7:c.5872C>T	p.Arg1958Cys	p.R1958C	ENST00000301067	NM_003482.3	1958	Cgc/Tgc																																																																															
AKT1	207	MSKCC	GRCh37	14	105243048	105243049	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGGCAGCGGATGATGAAGGTGTTGGGCCGGGGCCGCTCCGT			P-0024135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	63	902	0	ENST00000349310.3:c.193_234dup	p.Thr65_Leu78dup	p.T65_L78dup	ENST00000349310	NM_001014432.1	65	-/ACGGAGCGGCCCCGGCCCAACACCTTCATCATCCGCTGCCTG																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177027	56177031	+	frameshift_variant	Frame_Shift_Del	DEL	TGGAA	TGGAA	-			P-0024135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	69	674	0	ENST00000399503.3:c.2298_2302del	p.Leu766PhefsTer4	p.L766Ffs*4	ENST00000399503	NM_005921.1	766	tTGGAA/t																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177549	56177552	+	frameshift_variant	Frame_Shift_Del	DEL	TGAG	TGAG	-			P-0024135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	52	618	0	ENST00000399503.3:c.2524_2527del	p.Ser842PhefsTer14	p.S842Ffs*14	ENST00000399503	NM_005921.1	841	cTGAGt/ct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692820	89692820	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	16	320	0	ENST00000371953.3:c.306delA	p.Lys102AsnfsTer11	p.K102Nfs*11	ENST00000371953	NM_000314.4	102	Aaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	293	686	0	ENST00000269305.4:c.809T>G	p.Phe270Cys	p.F270C	ENST00000269305	NM_001126112.2	270	tTt/tGt																																																																															
POLE	5426	MSKCC	GRCh37	12	133219461	133219461	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	183	780	0	ENST00000320574.5:c.4673A>G	p.Glu1558Gly	p.E1558G	ENST00000320574	NM_006231.2	1558	gAa/gGa																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562750	21562750	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	57	492	0	ENST00000382592.4:c.1169del	p.Pro390ArgfsTer43	p.P390Rfs*43	ENST00000382592	NM_014572.2	390	cCg/cg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2213995	2213995	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	237	673	1	ENST00000326181.6:c.74C>A	p.Thr25Asn	p.T25N	ENST00000326181	NM_032271.2	25	aCc/aAc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45871984	45871985	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0024138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	125	567	1	ENST00000391945.4:c.263_264delinsTT	p.Arg88Leu	p.R88L	ENST00000391945	NM_000400.3	88	cGA/cTT																																																																															
SOS1	6654	MSKCC	GRCh37	2	39278347	39278347	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	58	763	0	ENST00000402219.2:c.802G>C	p.Glu268Gln	p.E268Q	ENST00000402219	NM_005633.3	268	Gaa/Caa																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873163	136873164	+	missense_variant	Missense_Mutation	DNP	AC	AC	TA			P-0024138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	97	447	0	ENST00000241393.3:c.334_335delinsTA	p.Val112Tyr	p.V112Y	ENST00000241393	NM_003467.2	112	GTc/TAc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023570	31023570	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	124	525	0	ENST00000375687.4:c.3055A>G	p.Arg1019Gly	p.R1019G	ENST00000375687	NM_015338.5	1019	Aga/Gga																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978617	70978617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	405	702	0	ENST00000276594.2:c.1036G>C	p.Gly346Arg	p.G346R	ENST00000276594	NM_024504.3	346	Ggg/Cgg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139393429	139393429	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	175	655	1	ENST00000277541.6:c.6102G>A	p.Trp2034Ter	p.W2034*	ENST00000277541	NM_017617.3	2034	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0024139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	121	704	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0024139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	51	432	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685315	89685315	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0024139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	54	494	0	ENST00000371953.3:c.209+1G>A		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																																
FLT3	2322	MSKCC	GRCh37	13	28626708	28626708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	79	561	0	ENST00000241453.7:c.588G>A	p.Trp196Ter	p.W196*	ENST00000241453	NM_004119.2	196	tgG/tgA																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437365	110437365	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	15	136	0	ENST00000375856.3:c.1036A>T	p.Ser346Cys	p.S346C	ENST00000375856	NM_003749.2	346	Agc/Tgc																																																																															
BARD1	580	MSKCC	GRCh37	2	215645820	215645820	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	71	603	0	ENST00000260947.4:c.778T>A	p.Leu260Ile	p.L260I	ENST00000260947	NM_000465.2	260	Tta/Ata																																																																															
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	117	754	1	ENST00000269305.4:c.596G>A	p.Gly199Glu	p.G199E	ENST00000269305	NM_001126112.2	199	gGa/gAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0024141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	293	525	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0024141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	27	476	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	71	716	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0024155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	161	914	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
NUF2	83540	MSKCC	GRCh37	1	163325165	163325165	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	94	581	0	ENST00000271452.3:c.1301A>G	p.His434Arg	p.H434R	ENST00000271452	NM_145697.2	434	cAc/cGc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265672	41266192	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTG	ACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTG	-			P-0024155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	132	219	0	ENST00000349496.5:c.13+100_189del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
PNRC1	10957	MSKCC	GRCh37	6	89793765	89793765	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	118	685	0	ENST00000336032.3:c.834T>A	p.Asn278Lys	p.N278K	ENST00000336032	NM_006813.2	278	aaT/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	530	773	1	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979562	7979562	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	421	681	0	ENST00000319144.4:c.1463G>T	p.Arg488Leu	p.R488L	ENST00000319144	NM_001139.2	488	cGt/cTt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245466	41245466	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	719	896	0	ENST00000357654.3:c.2082del	p.Ser694ArgfsTer7	p.S694Rfs*7	ENST00000357654	NM_007294.3	694	agC/ag																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46276090	46276090	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	139	571	2	ENST00000371998.3:c.3526C>T	p.Gln1176Ter	p.Q1176*	ENST00000371998		1176	Cag/Tag																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366981	15366981	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1485	365	551	0	ENST00000263377.2:c.1645G>C	p.Glu549Gln	p.E549Q	ENST00000263377	NM_058243.2	549	Gaa/Caa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111499	8111499	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	410	534	0	ENST00000346208.3:c.985A>G	p.Arg329Gly	p.R329G	ENST00000346208		329	Agg/Ggg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	463273	463273	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	357	424	0	ENST00000399788.2:c.998G>C	p.Gly333Ala	p.G333A	ENST00000399788	NM_001042603.1	333	gGa/gCa																																																																															
MSI1	4440	MSKCC	GRCh37	12	120784122	120784122	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	388	627	0	ENST00000257552.2:c.863C>G	p.Ser288Cys	p.S288C	ENST00000257552	NM_002442.3	288	tCt/tGt																																																																															
MGA	23269	MSKCC	GRCh37	15	42028640	42028640	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	347	538	0	ENST00000219905.7:c.4178C>A	p.Ser1393Tyr	p.S1393Y	ENST00000219905	NM_001164273.1	1393	tCt/tAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42058571	42058571	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	223	292	0	ENST00000219905.7:c.8291G>C	p.Arg2764Thr	p.R2764T	ENST00000219905	NM_001164273.1	2764	aGa/aCa																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647602	23647602	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	320	488	0	ENST00000261584.4:c.265G>C	p.Asp89His	p.D89H	ENST00000261584	NM_024675.3	89	Gat/Cat																																																																															
CDH1	999	MSKCC	GRCh37	16	68849484	68849484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	355	461	0	ENST00000261769.5:c.1387G>C	p.Glu463Gln	p.E463Q	ENST00000261769	NM_004360.3	463	Gag/Cag																																																																															
NF1	4763	MSKCC	GRCh37	17	29528481	29528481	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	352	467	0	ENST00000358273.4:c.1238C>A	p.Ser413Ter	p.S413*	ENST00000358273	NM_001042492.2	413	tCa/tAa																																																																															
RXRA	6256	MSKCC	GRCh37	9	137313599	137313599	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	404	616	0	ENST00000481739.1:c.858C>G	p.Ile286Met	p.I286M	ENST00000481739	NM_002957.4	286	atC/atG																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390923	139390923	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0024308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	339	601	0	ENST00000277541.6:c.7268C>G	p.Ser2423Ter	p.S2423*	ENST00000277541	NM_017617.3	2423	tCa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	407	685	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0024312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	25	419	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																															
APC	324	MSKCC	GRCh37	5	112175466	112175466	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs786204170		P-0024312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	277	348	0	ENST00000257430.4:c.4175C>A	p.Ser1392Ter	p.S1392*	ENST00000257430	NM_000038.5	1392	tCa/tAa																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114760	73114760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	16	177	0	ENST00000356692.5:c.1141G>A	p.Glu381Lys	p.E381K	ENST00000356692		381	Gaa/Aaa																																																																															
MYCL1	4610	MSKCC	GRCh37	1	40367512	40367512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	16	37	0	ENST00000397332.2:c.49G>A	p.Gly17Ser	p.G17S	ENST00000397332	NM_001033082.2	17	Ggt/Agt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920446	114920446	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	176	545	0	ENST00000543371.1:c.1387T>C	p.Cys463Arg	p.C463R	ENST00000543371	NM_001198531.1	463	Tgc/Cgc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86682685	86682685	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0024312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	86	399	1	ENST00000274376.6:c.2890A>T	p.Lys964Ter	p.K964*	ENST00000274376	NM_002890.2	964	Aaa/Taa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68989672	68989672	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	271	708	0	ENST00000288368.4:c.1610T>C	p.Val537Ala	p.V537A	ENST00000288368	NM_024870.2	537	gTt/gCt																																																																															
ATRX	546	MSKCC	GRCh37	X	76938212	76938212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	146	727	0	ENST00000373344.5:c.2536G>A	p.Asp846Asn	p.D846N	ENST00000373344	NM_000489.3	846	Gat/Aat																																																																															
PGR	5241	MSKCC	GRCh37	11	100920786	100920786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	75	472	6	ENST00000325455.5:c.2362C>T	p.Arg788Trp	p.R788W	ENST00000325455	NM_001202474.3	788	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	62	645	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0024315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	79	809	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061904	38061904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	83	783	0	ENST00000250448.2:c.85G>A	p.Val29Ile	p.V29I	ENST00000250448	NM_004496.3	29	Gtc/Atc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467865	66467865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	34	414	0	ENST00000273854.3:c.404G>A	p.Arg135Gln	p.R135Q	ENST00000273854	NM_004439.5	135	cGg/cAg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533790	63533790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	53	609	1	ENST00000307078.5:c.1364C>T	p.Pro455Leu	p.P455L	ENST00000307078	NM_004655.3	455	cCa/cTa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144147	11144147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	336	722	1	ENST00000344626.4:c.3728G>A	p.Arg1243Gln	p.R1243Q	ENST00000344626	NM_003072.3	1243	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0024316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	109	664	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	50	612	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264486	30264486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	46	545	0	ENST00000322652.5:c.221C>A	p.Pro74Gln	p.P74Q	ENST00000322652	NM_015355.2	74	cCg/cAg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879498	151879498	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	56	516	0	ENST00000262189.6:c.5447del	p.Asn1816MetfsTer33	p.N1816Mfs*33	ENST00000262189	NM_170606.2	1816	aAt/at																																																																															
AR	367	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	311	316	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829761	72829761	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	480	897	0	ENST00000268489.5:c.6820C>T	p.Gln2274Ter	p.Q2274*	ENST00000268489	NM_006885.3	2274	Caa/Taa																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186506954	186506954	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	203	354	0	ENST00000323963.5:c.1120A>G	p.Ile374Val	p.I374V	ENST00000323963		374	Ata/Gta																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922894	44922894	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	341	324	0	ENST00000377967.4:c.1757delG	p.Gly586GlufsTer7	p.G586Efs*7	ENST00000377967	NM_021140.2	585	ctG/ct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	184	584	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0024162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	262	731	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175193	112175193	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	129	298	0	ENST00000257430.4:c.3904delC	p.Leu1302CysfsTer3	p.L1302Cfs*3	ENST00000257430	NM_000038.5	1301	aCc/ac																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031864	10031864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	408	819	3	ENST00000330684.3:c.959G>T	p.Cys320Phe	p.C320F	ENST00000330684	NM_001134407.1	320	tGc/tTc																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30302723	30302723	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	121	549	0	ENST00000322652.5:c.814G>T	p.Glu272Ter	p.E272*	ENST00000322652	NM_015355.2	272	Gaa/Taa																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554281	63554281	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	293	859	0	ENST00000307078.5:c.458C>G	p.Thr153Ser	p.T153S	ENST00000307078	NM_004655.3	153	aCc/aGc																																																																															
APC	324	MSKCC	GRCh37	5	112174372	112174372	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	94	370	0	ENST00000257430.4:c.3081del	p.Tyr1027Ter	p.Y1027*	ENST00000257430	NM_000038.5	1027	taT/ta																																																																															
HGF	3082	MSKCC	GRCh37	7	81358998	81358998	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	162	737	0	ENST00000222390.5:c.963G>A	p.Trp321Ter	p.W321*	ENST00000222390	NM_000601.4	321	tgG/tgA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	109	617	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579473	7579473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	157	886	0	ENST00000269305.4:c.214C>T	p.Pro72Ser	p.P72S	ENST00000269305	NM_001126112.2	72	Ccc/Tcc																																																																															
CBFB	865	MSKCC	GRCh37	16	67116115	67116115	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0024170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	195	523	1	ENST00000412916.2:c.400-1G>A		p.X134_splice	ENST00000412916		134																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15271807	15271808	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	291	856	0	ENST00000263388.2:c.6631_6632insC	p.Tyr2211SerfsTer31	p.Y2211Sfs*31	ENST00000263388	NM_000435.2	2211	tac/tCac																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25462085	25462085	+	splice_acceptor_variant	Splice_Site	DEL	C	C	-			P-0024170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	126	622	0	ENST00000264709.3:c.2323-1del		p.X775_splice	ENST00000264709	NM_175629.2	775																																																																																
DNMT3A	1788	MSKCC	GRCh37	2	25467083	25467083	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	156	592	3	ENST00000264709.3:c.1792C>T	p.Arg598Ter	p.R598*	ENST00000264709	NM_175629.2	598	Cga/Tga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65305319	65305319	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	56	655	0	ENST00000342505.4:c.2809A>T	p.Ile937Phe	p.I937F	ENST00000342505	NM_002227.2	937	Att/Ttt																																																																															
POLE	5426	MSKCC	GRCh37	12	133210847	133210847	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	31	717	3	ENST00000320574.5:c.5929G>T	p.Glu1977Ter	p.E1977*	ENST00000320574	NM_006231.2	1977	Gaa/Taa																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469986	25469987	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTGCAAAAC			P-0024177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	125	564	0	ENST00000264709.3:c.1047_1055dup	p.Cys351_Ser352insArgPheCys	p.C351_S352insRFC	ENST00000264709	NM_175629.2	352	agt/agGTTTTGCAGt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942030	44942030	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	78	403	0	ENST00000377967.4:c.3284del	p.Lys1095SerfsTer9	p.K1095Sfs*9	ENST00000377967	NM_021140.2	1094	Aaa/aa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0024197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	238	926	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242486	+	protein_altering_variant	In_Frame_Del	DEL	ATTAAGAGAAGCAACATCT	ATTAAGAGAAGCAACATCT	GCAA			P-0024197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	1834	644	2	ENST00000275493.2:c.2238_2256delATTAAGAGAAGCAACATCTinsGCAA	p.Leu747_Ser752delinsGln	p.L747_S752delinsQ	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACATCT/gaGCAA																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2489230	2489230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	130	944	3	ENST00000355716.4:c.135C>A	p.Asp45Glu	p.D45E	ENST00000355716	NM_003820.2	45	gaC/gaA																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022750	12022750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	54	646	0	ENST00000396373.4:c.856G>T	p.Asp286Tyr	p.D286Y	ENST00000396373	NM_001987.4	286	Gat/Tat																																																																															
MSH6	2956	MSKCC	GRCh37	2	48018075	48018075	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	91	743	0	ENST00000234420.5:c.270C>G	p.Phe90Leu	p.F90L	ENST00000234420	NM_000179.2	90	ttC/ttG																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157519964	157519964	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	209	857	3	ENST00000346085.5:c.4033C>T	p.Gln1345Ter	p.Q1345*	ENST00000346085	NM_020732.3	1345	Cag/Tag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373255	118373255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	24	628	0	ENST00000534358.1:c.6648G>A	p.Met2216Ile	p.M2216I	ENST00000534358	NM_005933.3	2216	atG/atA																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945066	31945066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	36	929	0	ENST00000340398.3:c.35C>T	p.Thr12Ile	p.T12I	ENST00000340398	NM_001013699.2	12	aCc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	62	966	0	ENST00000269305.4:c.638G>C	p.Arg213Pro	p.R213P	ENST00000269305	NM_001126112.2	213	cGa/cCa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193181563	193181564	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0024199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	23	733	0	ENST00000367435.3:c.1111_1112del	p.Leu371AsnfsTer5	p.L371Nfs*5	ENST00000367435	NM_024529.4	370	tcTTta/tcta																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610298	10610298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	40	1286	1	ENST00000171111.5:c.412G>A	p.Glu138Lys	p.E138K	ENST00000171111	NM_203500.1	138	Gaa/Aaa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47637261	47637261	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	46	774	0	ENST00000233146.2:c.395A>T	p.Glu132Val	p.E132V	ENST00000233146	NM_000251.2	132	gAa/gTa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0024200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	14	761	1	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
PARP1	142	MSKCC	GRCh37	1	226574082	226574082	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	32	730	0	ENST00000366794.5:c.779A>G	p.Asp260Gly	p.D260G	ENST00000366794	NM_001618.3	260	gAc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	126	852	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15284985	15284985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	67	880	4	ENST00000263388.2:c.4630C>T	p.Arg1544Cys	p.R1544C	ENST00000263388	NM_000435.2	1544	Cgc/Tgc																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649942	88649942	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	95	777	0	ENST00000372037.3:c.191C>G	p.Ser64Ter	p.S64*	ENST00000372037	NM_004329.2	64	tCa/tGa																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88651978	88651978	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	90	417	0	ENST00000372037.3:c.325C>G	p.Gln109Glu	p.Q109E	ENST00000372037	NM_004329.2	109	Cag/Gag																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572020	64572020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	61	911	0	ENST00000337652.1:c.1634C>T	p.Pro545Leu	p.P545L	ENST00000337652	NM_130803.2	545	cCc/cTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434271	49434271	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	76	1248	0	ENST00000301067.7:c.7282del	p.Arg2428GlyfsTer57	p.R2428Gfs*57	ENST00000301067	NM_003482.3	2428	Cgg/gg																																																																															
MGA	23269	MSKCC	GRCh37	15	42026780	42026780	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	44	473	0	ENST00000219905.7:c.3904G>C	p.Asp1302His	p.D1302H	ENST00000219905	NM_001164273.1	1302	Gat/Cat																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2094750	2094750	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	87	981	0	ENST00000219066.1:c.430G>C	p.Asp144His	p.D144H	ENST00000219066	NM_002528.5	144	Gac/Cac																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63545662	63545662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	54	699	0	ENST00000307078.5:c.932C>A	p.Ser311Tyr	p.S311Y	ENST00000307078	NM_004655.3	311	tCc/tAc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17937605	17937605	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	64	991	0	ENST00000458235.1:c.3322C>G	p.His1108Asp	p.H1108D	ENST00000458235	NM_000215.3	1108	Cat/Gat																																																																															
BBC3	27113	MSKCC	GRCh37	19	47730006	47730006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	44	590	0	ENST00000449228.1:c.383C>T	p.Ser128Leu	p.S128L	ENST00000449228	NM_001127240.2	128	tCa/tTa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39283950	39283950	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	68	672	0	ENST00000402219.2:c.403G>C	p.Glu135Gln	p.E135Q	ENST00000402219	NM_005633.3	135	Gaa/Caa																																																																															
XPO1	7514	MSKCC	GRCh37	2	61710143	61710143	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	51	629	0	ENST00000401558.2:c.2761G>C	p.Asp921His	p.D921H	ENST00000401558	NM_003400.3	921	Gat/Cat																																																																															
XPO1	7514	MSKCC	GRCh37	2	61710168	61710168	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	52	627	1	ENST00000401558.2:c.2736G>C	p.Gln912His	p.Q912H	ENST00000401558	NM_003400.3	912	caG/caC																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144072	55144072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	56	620	0	ENST00000257290.5:c.1901G>A	p.Arg634Lys	p.R634K	ENST00000257290	NM_006206.4	634	aGa/aAa																																																																															
PREX2	80243	MSKCC	GRCh37	8	68995543	68995543	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	93	862	0	ENST00000288368.4:c.1947C>G	p.Phe649Leu	p.F649L	ENST00000288368	NM_024870.2	649	ttC/ttG																																																																															
CYLD	1540	MSKCC	GRCh37	16	50821726	50821729	+	missense_variant	Missense_Mutation	ONP	CATC	CATC	TATT			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	79	645	0	ENST00000398568.2:c.2062_2065delinsTATT	p.His688_His689delinsTyrTyr	p.H688_H689delinsYY	ENST00000398568	NM_001042412.1	688	CATCat/TATTat																																																																															
PTEN	5728	MSKCC	GRCh37	10	89685281	89685281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	53	455	0	ENST00000371953.3:c.176C>G	p.Ser59Ter	p.S59*	ENST00000371953	NM_000314.4	59	tCa/tGa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86674233	86674233	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	71	451	0	ENST00000274376.6:c.2365C>T	p.Arg789Ter	p.R789*	ENST00000274376	NM_002890.2	789	Cga/Tga																																																																															
ETV6	2120	MSKCC	GRCh37	12	12037480	12037480	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	70	413	0	ENST00000396373.4:c.1111G>C	p.Val371Leu	p.V371L	ENST00000396373	NM_001987.4	371	Gtg/Ctg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441780	49441780	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	146	606	0	ENST00000301067.7:c.4204C>T	p.Gln1402Ter	p.Q1402*	ENST00000301067	NM_003482.3	1402	Cag/Tag																																																																															
RB1	5925	MSKCC	GRCh37	13	48919215	48919215	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	28	212	0	ENST00000267163.4:c.381-1G>T		p.X127_splice	ENST00000267163	NM_000321.2	127																																																																																
TP53BP1	7158	MSKCC	GRCh37	15	43733737	43733737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	30	596	0	ENST00000382044.4:c.3085G>C	p.Glu1029Gln	p.E1029Q	ENST00000382044	NM_001141980.1	1029	Gag/Cag																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30320350	30320350	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	56	391	0	ENST00000322652.5:c.1291C>T	p.Gln431Ter	p.Q431*	ENST00000322652	NM_015355.2	431	Cag/Tag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211381	36211381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	81	818	0	ENST00000222270.7:c.1132G>A	p.Gly378Arg	p.G378R	ENST00000222270	NM_014727.1	378	Gga/Aga																																																																															
TP63	8626	MSKCC	GRCh37	3	189587167	189587167	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	74	591	0	ENST00000264731.3:c.1184C>G	p.Ser395Cys	p.S395C	ENST00000264731	NM_003722.4	395	tCc/tGc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978658	70978658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	153	892	3	ENST00000276594.2:c.995G>A	p.Arg332His	p.R332H	ENST00000276594	NM_024504.3	332	cGc/cAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8338966	8338966	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	58	630	0	ENST00000356435.5:c.5335A>T	p.Met1779Leu	p.M1779L	ENST00000356435		1779	Atg/Ttg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405632	139405632	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	69	1016	0	ENST00000277541.6:c.2559C>G	p.Phe853Leu	p.F853L	ENST00000277541	NM_017617.3	853	ttC/ttG																																																																															
STAG2	10735	MSKCC	GRCh37	X	123200039	123200039	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	28	206	0	ENST00000218089.9:c.2111C>G	p.Ser704Ter	p.S704*	ENST00000218089	NM_001042749.1	704	tCa/tGa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177584	56177584	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368201444		P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	84	470	2	ENST00000399503.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000399503	NM_005921.1	853	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	94	814	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	21	271	5	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636794	8636794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	132	678	0	ENST00000356435.5:c.115G>A	p.Gly39Arg	p.G39R	ENST00000356435		39	Gga/Aga																																																																															
CIC	23152	MSKCC	GRCh37	19	42791757	42791757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	19	782	0	ENST00000575354.2:c.643C>T	p.Arg215Trp	p.R215W	ENST00000575354	NM_015125.3	215	Cgg/Tgg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116263	209116263	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	20	421	0	ENST00000345146.2:c.13delA	p.Ile5SerfsTer7	p.I5Sfs*7	ENST00000345146	NM_005896.2	5	Atc/tc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905873	50905873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	46	797	1	ENST00000440232.2:c.845C>T	p.Thr282Met	p.T282M	ENST00000440232	NM_002691.3	282	aCg/aTg																																																																															
WT1	7490	MSKCC	GRCh37	11	32421519	32421519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	68	630	0	ENST00000332351.3:c.1073C>T	p.Thr358Met	p.T358M	ENST00000332351	NM_024426.4	358	aCg/aTg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458147	120458147	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1325403451		P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	56	691	1	ENST00000256646.2:c.7198C>T	p.Arg2400Ter	p.R2400*	ENST00000256646	NM_024408.3	2400	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925441	114925441	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138649767		P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	47	676	3	ENST00000543371.1:c.1519G>A	p.Ala507Thr	p.A507T	ENST00000543371	NM_001198531.1	507	Gcc/Acc																																																																															
BBC3	27113	MSKCC	GRCh37	19	47725019	47725019	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	37	924	2	ENST00000449228.1:c.725del	p.Gly242AlafsTer48	p.G242Afs*48	ENST00000449228	NM_001127240.2	242	gGc/gc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18965779	18965779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	46	902	2	ENST00000262803.5:c.1357G>A	p.Val453Ile	p.V453I	ENST00000262803	NM_002911.3	453	Gta/Ata																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830807	72830807	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	83	733	1	ENST00000268489.5:c.5774del	p.Gly1925ValfsTer72	p.G1925Vfs*72	ENST00000268489	NM_006885.3	1925	gGt/gt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288965	33288965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	88	501	0	ENST00000374542.5:c.587C>T	p.Ala196Val	p.A196V	ENST00000374542	NM_001141970.1	196	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446160	49446160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	29	838	0	ENST00000301067.7:c.1306G>A	p.Glu436Lys	p.E436K	ENST00000301067	NM_003482.3	436	Gag/Aag																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2222293	2222293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763973302		P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	65	856	5	ENST00000326181.6:c.577C>T	p.Arg193Trp	p.R193W	ENST00000326181	NM_032271.2	193	Cgg/Tgg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11291110	11291110	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	45	648	0	ENST00000361445.4:c.2651C>T	p.Ala884Val	p.A884V	ENST00000361445	NM_004958.3	884	gCc/gTc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78428598	78428598	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	44	587	3	ENST00000370768.2:c.1201del	p.Ser401AlafsTer2	p.S401Afs*2	ENST00000370768	NM_003902.3	401	Agc/gc																																																																															
RET	5979	MSKCC	GRCh37	10	43608364	43608364	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	91	914	1	ENST00000355710.3:c.1712A>T	p.Asp571Val	p.D571V	ENST00000355710	NM_020975.4	571	gAt/gTt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134521	2134521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	96	849	1	ENST00000219476.3:c.4298C>T	p.Ser1433Leu	p.S1433L	ENST00000219476	NM_000548.3	1433	tCg/tTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639839	3639839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	59	779	2	ENST00000294008.3:c.3800G>A	p.Arg1267His	p.R1267H	ENST00000294008	NM_032444.2	1267	cGt/cAt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781860	3781860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	86	962	0	ENST00000262367.5:c.4807G>A	p.Ala1603Thr	p.A1603T	ENST00000262367	NM_004380.2	1603	Gcc/Acc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3808001	3808001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	52	656	1	ENST00000262367.5:c.3418C>T	p.Arg1140Trp	p.R1140W	ENST00000262367	NM_004380.2	1140	Cgg/Tgg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40485713	40485713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	86	647	3	ENST00000264657.5:c.1027G>A	p.Val343Ile	p.V343I	ENST00000264657	NM_139276.2	343	Gtc/Atc																																																																															
STAT3	6774	MSKCC	GRCh37	17	40497608	40497608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	107	880	2	ENST00000264657.5:c.341G>A	p.Arg114His	p.R114H	ENST00000264657	NM_139276.2	114	cGc/cAc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554621	63554621	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	23	689	0	ENST00000307078.5:c.118G>C	p.Val40Leu	p.V40L	ENST00000307078	NM_004655.3	40	Gtg/Ctg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220134	5220134	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115469963		P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	32	624	2	ENST00000357368.4:c.3581G>A	p.Arg1194His	p.R1194H	ENST00000357368	NM_002850.3	1194	cGc/cAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11172483	11172483	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	92	783	0	ENST00000344626.4:c.4935A>C	p.Glu1645Asp	p.E1645D	ENST00000344626	NM_003072.3	1645	gaA/gaC																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210791	36210791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	41	969	3	ENST00000222270.7:c.542G>A	p.Arg181Gln	p.R181Q	ENST00000222270	NM_014727.1	181	cGg/cAg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212401	36212401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	79	876	2	ENST00000222270.7:c.2152G>A	p.Glu718Lys	p.E718K	ENST00000222270	NM_014727.1	718	Gag/Aag																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607469	46607469	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201311893		P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	114	921	2	ENST00000263734.3:c.1658C>T	p.Ala553Val	p.A553V	ENST00000263734	NM_001430.4	553	gCg/gTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023600	31023600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	28	673	0	ENST00000375687.4:c.3085G>A	p.Val1029Met	p.V1029M	ENST00000375687	NM_015338.5	1029	Gtg/Atg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747831	41747831	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	48	427	0	ENST00000226382.2:c.938T>C	p.Met313Thr	p.M313T	ENST00000226382	NM_003924.3	313	aTg/aCg																																																																															
RAD50	10111	MSKCC	GRCh37	5	131972843	131972843	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	48	469	0	ENST00000265335.6:c.3426A>T	p.Glu1142Asp	p.E1142D	ENST00000265335		1142	gaA/gaT																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149433981	149433981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	46	911	3	ENST00000286301.3:c.2667G>A	p.Met889Ile	p.M889I	ENST00000286301	NM_005211.3	889	atG/atA																																																																															
PARK2	5071	MSKCC	GRCh37	6	162683650	162683650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	81	630	0	ENST00000366898.1:c.319C>A	p.Leu107Ile	p.L107I	ENST00000366898	NM_004562.2	107	Ctc/Atc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884448	151884448	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773744238		P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	79	467	0	ENST00000262189.6:c.4907C>T	p.Thr1636Met	p.T1636M	ENST00000262189	NM_170606.2	1636	aCg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900065	151900065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	86	617	0	ENST00000262189.6:c.4046G>A	p.Arg1349Gln	p.R1349Q	ENST00000262189	NM_170606.2	1349	cGa/cAa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030503	47030503	+	intron_variant	Intron	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	75	471	1	ENST00000329236.7:c.201+1606C>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0024319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	34	708	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	171	907	1	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913381		P-0024349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	54	256	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0024349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	195	759	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468081	50468081	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	139	522	0	ENST00000331340.3:c.1316G>T	p.Arg439Leu	p.R439L	ENST00000331340	NM_006060.4	439	cGc/cTc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023685	27023685	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	69	332	0	ENST00000324856.7:c.791C>A	p.Ser264Ter	p.S264*	ENST00000324856	NM_006015.4	264	tCg/tAg																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38591641	38591641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	236	756	0	ENST00000299084.4:c.100C>T	p.Leu34Phe	p.L34F	ENST00000299084	NM_152594.2	34	Ctt/Ttt																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14016026	14016026	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	70	445	0	ENST00000311895.7:c.346G>T	p.Val116Phe	p.V116F	ENST00000311895	NM_005236.2	116	Gtt/Ttt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468445	89468445	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	117	523	0	ENST00000336596.2:c.1979C>A	p.Thr660Lys	p.T660K	ENST00000336596	NM_005233.5	660	aCa/aAa																																																																															
KDR	3791	MSKCC	GRCh37	4	55956207	55956207	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	108	814	0	ENST00000263923.4:c.3108A>T	p.Leu1036Phe	p.L1036F	ENST00000263923	NM_002253.2	1036	ttA/ttT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106515196	106515196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	81	661	0	ENST00000359195.3:c.2339C>A	p.Pro780His	p.P780H	ENST00000359195	NM_002649.2	780	cCc/cAc																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372233	55372233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	25	212	0	ENST00000297316.4:c.923G>T	p.Gly308Val	p.G308V	ENST00000297316	NM_022454.3	308	gGg/gTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	184	624	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0024357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	90	679	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	101	884	2	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																															
CDH1	999	MSKCC	GRCh37	16	68845757	68845757	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	82	415	0	ENST00000261769.5:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000261769	NM_004360.3	335	Cga/Tga																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846204	156846204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	95	687	0	ENST00000524377.1:c.1645G>A	p.Ala549Thr	p.A549T	ENST00000524377	NM_002529.3	549	Gcg/Acg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2987418	2987421	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CCTC	CCTC	-			P-0021913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	45	682	0	ENST00000396946.4:c.8_11delGAGG	p.Gly3GlufsTer12	p.G3Efs*12	ENST00000396946	NM_032415.4	3	gGAGGa/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	90	773	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0024023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	93	558	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0024023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	91	611	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440680	56440680	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	176	872	2	ENST00000407977.2:c.538C>T	p.Gln180Ter	p.Q180*	ENST00000407977		180	Caa/Taa																																																																															
RAF1	5894	MSKCC	GRCh37	3	12627284	12627284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	157	568	0	ENST00000251849.4:c.1432G>A	p.Glu478Lys	p.E478K	ENST00000251849	NM_002880.3	478	Gaa/Aaa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440892	56440892	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	174	847	1	ENST00000407977.2:c.445G>T	p.Glu149Ter	p.E149*	ENST00000407977		149	Gag/Tag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686398	30686399	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0024023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	24	427	0	ENST00000359013.4:c.330_331dup	p.Ala111GlyfsTer11	p.A111Gfs*11	ENST00000359013	NM_001024847.2	110	gtg/gtGGg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729898	30729899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	135	452	0	ENST00000359013.4:c.1497dup	p.Gly500TrpfsTer41	p.G500Wfs*41	ENST00000359013	NM_001024847.2	498	-/T																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041404	47041405	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	151	463	0	ENST00000329236.7:c.1519dup	p.Gln507ProfsTer7	p.Q507Pfs*7	ENST00000329236	NM_001204466.1	505	gac/gaCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	622	704	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	73	386	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528711	8528711	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774617096		P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	82	435	0	ENST00000356435.5:c.421C>T	p.Arg141Cys	p.R141C	ENST00000356435		141	Cgc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242486	+	inframe_deletion	In_Frame_Del	DEL	TTAAGAGAAGCAACATCT	TTAAGAGAAGCAACATCT	-	rs121913440		P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	382	527	0	ENST00000275493.2:c.2239_2256del	p.Leu747_Ser752del	p.L747_S752del	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAACATCT/-																																																																															
SPEN	23013	MSKCC	GRCh37	1	16242713	16242713	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	138	624	0	ENST00000375759.3:c.1334T>A	p.Leu445His	p.L445H	ENST00000375759	NM_015001.2	445	cTt/cAt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162743346	162743346	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	86	446	0	ENST00000367921.3:c.1816G>T	p.Ala606Ser	p.A606S	ENST00000367921	NM_006182.2	606	Gct/Tct																																																																															
FLT1	2321	MSKCC	GRCh37	13	28901634	28901634	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	98	574	0	ENST00000282397.4:c.2761C>G	p.Leu921Val	p.L921V	ENST00000282397	NM_002019.4	921	Ctc/Gtc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934546	9934546	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	95	562	0	ENST00000330684.3:c.1609G>T	p.Val537Phe	p.V537F	ENST00000330684	NM_001134407.1	537	Gtt/Ttt																																																																															
TOP1	7150	MSKCC	GRCh37	20	39708741	39708741	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	54	599	0	ENST00000361337.2:c.352G>C	p.Asp118His	p.D118H	ENST00000361337	NM_003286.2	118	Gat/Cat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177575	56177575	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	33	429	0	ENST00000399503.3:c.2548A>T	p.Thr850Ser	p.T850S	ENST00000399503	NM_005921.1	850	Acc/Tcc																																																																															
NPM1	4869	MSKCC	GRCh37	5	170827161	170827161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	183	305	0	ENST00000296930.5:c.529G>T	p.Asp177Tyr	p.D177Y	ENST00000296930	NM_002520.6	177	Gat/Tat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268918	55268918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	140	797	0	ENST00000275493.2:c.2984C>T	p.Ser995Phe	p.S995F	ENST00000275493	NM_005228.3	995	tCc/tTc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209600	98209600	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	81	672	0	ENST00000331920.6:c.3938C>G	p.Pro1313Arg	p.P1313R	ENST00000331920	NM_000264.3	1313	cCa/cGa																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0024030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	50	519	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0024030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	107	865	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
ELF3	1999	MSKCC	GRCh37	1	201983134	201983150	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AGCTGAGCCGGGCCATG	AGCTGAGCCGGGCCATG	-			P-0024030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	29	698	0	ENST00000359651.3:c.985_1001del	p.Leu329ValfsTer136	p.L329Vfs*136	ENST00000359651		328	aAGCTGAGCCGGGCCATG/a																																																																															
FLCN	201163	MSKCC	GRCh37	17	17118498	17118498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0024225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	26	685	1	ENST00000285071.4:c.1432+1G>A		p.X478_splice	ENST00000285071	NM_144997.5	478																																																																																
CDK12	51755	MSKCC	GRCh37	17	37682537	37682537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	27	393	0	ENST00000447079.4:c.3728G>T	p.Arg1243Ile	p.R1243I	ENST00000447079	NM_015083.1	1243	aGa/aTa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866444	37866445	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	125	877	0	ENST00000269571.5:c.750dup	p.Asp251Ter	p.D251*	ENST00000269571		250	tct/tcTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	40	843	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0024228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	14	436	1	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741886	17741886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	42	176	1	ENST00000250003.3:c.557C>T	p.Pro186Leu	p.P186L	ENST00000250003	NM_002478.4	186	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs878854073		P-0024228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	71	722	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
CDC73	79577	MSKCC	GRCh37	1	193172955	193172955	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	20	663	0	ENST00000367435.3:c.1003C>G	p.Pro335Ala	p.P335A	ENST00000367435	NM_024529.4	335	Cct/Gct																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30194805	30194805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	33	965	0	ENST00000331968.5:c.340C>T	p.Leu114Phe	p.L114F	ENST00000331968	NM_002742.2	114	Ctt/Ttt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609973	81609973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	34	369	0	ENST00000298171.2:c.1571C>G	p.Thr524Ser	p.T524S	ENST00000298171	NM_000369.2	524	aCc/aGc																																																																															
NF1	4763	MSKCC	GRCh37	17	29486083	29486083	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	10	752	0	ENST00000358273.4:c.260T>A	p.Leu87Ter	p.L87*	ENST00000358273	NM_001042492.2	87	tTg/tAg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289753	15289753	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0024228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	188	998	1	ENST00000263388.2:c.3719-1G>A		p.X1240_splice	ENST00000263388	NM_000435.2	1240																																																																																
JAK3	3718	MSKCC	GRCh37	19	17940999	17940999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	206	1193	1	ENST00000458235.1:c.3125G>A	p.Arg1042Gln	p.R1042Q	ENST00000458235	NM_000215.3	1042	cGg/cAg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99155399	99155399	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	38	581	0	ENST00000074304.5:c.625C>G	p.Arg209Gly	p.R209G	ENST00000074304	NM_001134224.1	209	Cga/Gga																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715604	30715604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	10	330	0	ENST00000359013.4:c.1337C>T	p.Thr446Ile	p.T446I	ENST00000359013	NM_001024847.2	446	aCt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0024236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	291	880	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910349	29910349	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	234	1122	0	ENST00000376809.5:c.19C>T	p.Arg7Ter	p.R7*	ENST00000376809	NM_002116.7	7	Cga/Tga																																																																															
KIT	3815	MSKCC	GRCh37	4	55592128	55592128	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	45	750	0	ENST00000288135.5:c.1452G>T	p.Lys484Asn	p.K484N	ENST00000288135	NM_000222.2	484	aaG/aaT																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444486	50444486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	111	395	0	ENST00000331340.3:c.416A>G	p.His139Arg	p.H139R	ENST00000331340	NM_006060.4	139	cAc/cGc																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851944	63851944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	100	614	0	ENST00000279873.7:c.2722C>A	p.Leu908Met	p.L908M	ENST00000279873	NM_032199.2	908	Ctg/Atg																																																																															
MGA	23269	MSKCC	GRCh37	15	42003461	42003461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	65	641	1	ENST00000219905.7:c.2998G>A	p.Asp1000Asn	p.D1000N	ENST00000219905	NM_001164273.1	1000	Gac/Aac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993758	72993758	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	127	525	0	ENST00000268489.5:c.287A>G	p.Glu96Gly	p.E96G	ENST00000268489	NM_006885.3	96	gAg/gGg																																																																															
NF1	4763	MSKCC	GRCh37	17	29585361	29585361	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0024236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	169	625	1	ENST00000358273.4:c.4174-1G>T		p.X1392_splice	ENST00000358273	NM_001042492.2	1392																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11130265	11130265	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0024236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	179	461	0	ENST00000344626.4:c.2506-2A>C		p.X836_splice	ENST00000344626	NM_003072.3	836																																																																																
CUL3	8452	MSKCC	GRCh37	2	225376221	225376221	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	207	685	0	ENST00000264414.4:c.733A>G	p.Ile245Val	p.I245V	ENST00000264414	NM_003590.4	245	Ata/Gta																																																																															
EP300	2033	MSKCC	GRCh37	22	41513574	41513574	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	154	642	0	ENST00000263253.7:c.478C>T	p.Gln160Ter	p.Q160*	ENST00000263253	NM_001429.3	160	Cag/Tag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670848	134670848	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	77	450	0	ENST00000398015.3:c.759C>A	p.Cys253Ter	p.C253*	ENST00000398015	NM_004441.4	253	tgC/tgA																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247384	153247384	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0024236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	78	305	1	ENST00000281708.4:c.1419-1G>C		p.X473_splice	ENST00000281708	NM_033632.3	473																																																																																
NSD1	64324	MSKCC	GRCh37	5	176665310	176665310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	85	512	1	ENST00000439151.2:c.3994G>A	p.Glu1332Lys	p.E1332K	ENST00000439151	NM_022455.4	1332	Gag/Aag																																																																															
PRDM1	639	MSKCC	GRCh37	6	106554318	106554318	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	171	531	1	ENST00000369096.4:c.1846G>T	p.Ala616Ser	p.A616S	ENST00000369096	NM_001198.3	616	Gcc/Tcc																																																																															
HGF	3082	MSKCC	GRCh37	7	81374373	81374373	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	156	516	0	ENST00000222390.5:c.689A>T	p.Lys230Met	p.K230M	ENST00000222390	NM_000601.4	230	aAg/aTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971117	21971117	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	114	502	0	ENST00000304494.5:c.241C>A	p.Pro81Thr	p.P81T	ENST00000304494	NM_000077.4	81	Ccc/Acc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107175	27107175	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	61	700	0	ENST00000324856.7:c.6787del	p.Val2263TyrfsTer4	p.V2263Yfs*4	ENST00000324856	NM_006015.4	2262	tcG/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	58	840	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81606082	81606082	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	66	774	0	ENST00000298171.2:c.752A>C	p.Glu251Ala	p.E251A	ENST00000298171	NM_000369.2	251	gAa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0024238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	58	811	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255118	16255118	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	159	458	1	ENST00000375759.3:c.2383C>T	p.Arg795Ter	p.R795*	ENST00000375759	NM_015001.2	795	Cga/Tga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900243	32900243	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	128	538	0	ENST00000380152.3:c.431T>C	p.Val144Ala	p.V144A	ENST00000380152		144	gTt/gCt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778128	3778128	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	349	1110	0	ENST00000262367.5:c.6920C>G	p.Ser2307Cys	p.S2307C	ENST00000262367	NM_004380.2	2307	tCc/tGc																																																																															
NF1	4763	MSKCC	GRCh37	17	29533286	29533332	+	frameshift_variant	Frame_Shift_Del	DEL	ATGCTGTGTATTGTCACTCGGTTGAACTTCGAAATATGTTTGGTGAA	ATGCTGTGTATTGTCACTCGGTTGAACTTCGAAATATGTTTGGTGAA	-			P-0024266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	85	432	0	ENST00000358273.4:c.1290_1336del	p.Ala431ThrfsTer3	p.A431Tfs*3	ENST00000358273	NM_001042492.2	430	gATGCTGTGTATTGTCACTCGGTTGAACTTCGAAATATGTTTGGTGAA/g																																																																															
MSH2	4436	MSKCC	GRCh37	2	47710033	47710033	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	112	434	0	ENST00000233146.2:c.2750C>G	p.Ala917Gly	p.A917G	ENST00000233146	NM_000251.2	917	gCa/gGa																																																																															
MED12	9968	MSKCC	GRCh37	X	70339243	70339243	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	235	809	0	ENST00000374080.3:c.120T>G	p.Asn40Lys	p.N40K	ENST00000374080		40	aaT/aaG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	146	758	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0024268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	156	846	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0021919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	660	734	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0021919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	210	755	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0021919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	121	473	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948745	71948745	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	169	772	3	ENST00000298229.2:c.3457C>T	p.Gln1153Ter	p.Q1153*	ENST00000298229	NM_001567.3	1153	Cag/Tag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	357	749	2	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0024026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	268	654	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
ETV1	2115	MSKCC	GRCh37	7	13940403	13940403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	58	569	0	ENST00000405192.2:c.1103G>A	p.Arg368His	p.R368H	ENST00000405192	NM_001163147.1	368	cGt/cAt																																																																															
TET2	54790	MSKCC	GRCh37	4	106155921	106155921	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	94	463	2	ENST00000380013.4:c.822delC	p.Asn275IlefsTer18	p.N275Ifs*18	ENST00000380013	NM_001127208.2	274	atC/at																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272347	15272347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	101	1064	5	ENST00000263388.2:c.6092G>A	p.Arg2031His	p.R2031H	ENST00000263388	NM_000435.2	2031	cGc/cAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349024	89349024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	91	1062	1	ENST00000301030.4:c.3926C>T	p.Thr1309Met	p.T1309M	ENST00000301030	NM_001256183.1	1309	aCg/aTg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65349035	65349035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	176	678	0	ENST00000342505.4:c.130G>A	p.Asp44Asn	p.D44N	ENST00000342505	NM_002227.2	44	Gac/Aac																																																																															
STAT3	6774	MSKCC	GRCh37	17	40490751	40490751	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0024026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	178	704	0	ENST00000264657.5:c.548G>C	p.Gly183Ala	p.G183A	ENST00000264657	NM_139276.2	183	gGa/gCa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11118597	11118597	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747463080		P-0024026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	55	575	0	ENST00000344626.4:c.2021C>T	p.Pro674Leu	p.P674L	ENST00000344626	NM_003072.3	674	cCg/cTg																																																																															
POLD1	5424	MSKCC	GRCh37	19	50921181	50921181	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	81	979	2	ENST00000440232.2:c.3305delC	p.Pro1102LeufsTer22	p.P1102Lfs*22	ENST00000440232	NM_002691.3	1101	Ccc/cc																																																																															
TET2	54790	MSKCC	GRCh37	4	106156204	106156204	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	101	468	0	ENST00000380013.4:c.1105C>G	p.Arg369Gly	p.R369G	ENST00000380013	NM_001127208.2	369	Cgg/Ggg																																																																															
TET2	54790	MSKCC	GRCh37	4	106156445	106156445	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	47	476	0	ENST00000380013.4:c.1346T>A	p.Val449Glu	p.V449E	ENST00000380013	NM_001127208.2	449	gTg/gAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21994186	21994187	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	259	822	0	ENST00000361570.3:c.267dup	p.Leu90AlafsTer14	p.L90Afs*14	ENST00000361570	NM_058195.3	89	-/G																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139818323	139818323	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0024026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	457	773	0	ENST00000247668.2:c.1158C>G	p.Tyr386Ter	p.Y386*	ENST00000247668	NM_021138.3	386	taC/taG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	78	824	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717724	89717724	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	100	655	0	ENST00000371953.3:c.749G>T	p.Cys250Phe	p.C250F	ENST00000371953	NM_000314.4	250	tGt/tTt																																																																															
PGR	5241	MSKCC	GRCh37	11	100999728	100999728	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	63	966	0	ENST00000325455.5:c.74C>A	p.Ser25Tyr	p.S25Y	ENST00000325455	NM_001202474.3	25	tCc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577537	7577538	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0024035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	58	861	2	ENST00000269305.4:c.743_744delinsTT	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGG/cTT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295678	212295678	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	31	591	0	ENST00000342788.4:c.2635G>C	p.Gly879Arg	p.G879R	ENST00000342788	NM_005235.2	879	Gga/Cga																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091749	29091749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	27	411	0	ENST00000328354.6:c.1208G>T	p.Gly403Val	p.G403V	ENST00000328354	NM_007194.3	403	gGg/gTg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371883	55371883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	21	353	0	ENST00000297316.4:c.575del	p.Pro192ArgfsTer195	p.P192Rfs*195	ENST00000297316	NM_022454.3	191	ggC/gg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518349	8518349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	15	410	0	ENST00000356435.5:c.1042C>A	p.Pro348Thr	p.P348T	ENST00000356435		348	Cct/Act																																																																															
STAG2	10735	MSKCC	GRCh37	X	123184090	123184090	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	27	611	0	ENST00000218089.9:c.948G>T	p.Met316Ile	p.M316I	ENST00000218089	NM_001042749.1	316	atG/atT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	306	753	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0024037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	35	405	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220410	1220410	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	400	896	1	ENST00000326873.7:c.503A>T	p.His168Leu	p.H168L	ENST00000326873	NM_000455.4	168	cAt/cTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038562	47038562	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0024037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	167	883	0	ENST00000329236.7:c.493G>T	p.Glu165Ter	p.E165*	ENST00000329236	NM_001204466.1	165	Gag/Tag																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032204	10032204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	278	825	0	ENST00000330684.3:c.619G>T	p.Asp207Tyr	p.D207Y	ENST00000330684	NM_001134407.1	207	Gac/Tac																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880864	134880864	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	210	619	0	ENST00000398015.3:c.1427A>G	p.His476Arg	p.H476R	ENST00000398015	NM_004441.4	476	cAc/cGc																																																																															
HGF	3082	MSKCC	GRCh37	7	81355323	81355323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	46	439	0	ENST00000222390.5:c.1051G>A	p.Glu351Lys	p.E351K	ENST00000222390	NM_000601.4	351	Gaa/Aaa																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87635179	87635179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	159	645	0	ENST00000277120.3:c.2231G>A	p.Arg744Lys	p.R744K	ENST00000277120		744	aGg/aAg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411537	63411537	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	132	942	0	ENST00000330258.3:c.1630C>G	p.Pro544Ala	p.P544A	ENST00000330258	NM_152424.3	544	Ccc/Gcc																																																																															
ATRX	546	MSKCC	GRCh37	X	76931746	76931746	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	77	732	0	ENST00000373344.5:c.3784G>T	p.Asp1262Tyr	p.D1262Y	ENST00000373344	NM_000489.3	1262	Gat/Tat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0024047-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			2281	256	722	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0024047-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			340	240	726	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023280	27023284	+	frameshift_variant	Frame_Shift_Del	DEL	GCGAT	GCGAT	-			P-0024047-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			109	18	164	0	ENST00000324856.7:c.387_391del	p.Ser129ArgfsTer269	p.S129Rfs*269	ENST00000324856	NM_006015.4	129	aGCGAT/a																																																																															
CCND2	894	MSKCC	GRCh37	12	4383231	4383231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024047-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			190	79	484	0	ENST00000261254.3:c.25G>A	p.Asp9Asn	p.D9N	ENST00000261254	NM_001759.3	9	Gac/Aac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517753	187517753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024047-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			238	50	300	1	ENST00000441802.2:c.12941C>T	p.Ser4314Leu	p.S4314L	ENST00000441802	NM_005245.3	4314	tCa/tTa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998922	11998922	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024047-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			590	68	481	0	ENST00000353533.5:c.424del	p.Gln142LysfsTer10	p.Q142Kfs*10	ENST00000353533	NM_003010.3	142	Caa/aa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998922	11998931	+	frameshift_variant	Frame_Shift_Del	DEL	CAAAAACAAC	CAAAAACAAC	AAAAAAAAA			P-0024047-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			584	88	504	1	ENST00000353533.5:c.424_433delinsAAAAAAAAA	p.Gln142LysfsTer10	p.Q142Kfs*10	ENST00000353533	NM_003010.3	142	CAAAAACAACtt/AAAAAAAAAtt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923207	39923207	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0024047-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			526	49	485	0	ENST00000378444.4:c.3503-2A>G		p.X1168_splice	ENST00000378444	NM_001123385.1	1168																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	31	651	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151960098	151960099	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0024049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	36	481	0	ENST00000262189.6:c.1299+2dup		p.X433_splice	ENST00000262189	NM_170606.2	433																																																																																
CBFB	865	MSKCC	GRCh37	16	67070642	67070642	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	21	268	0	ENST00000412916.2:c.268del	p.Arg90GlufsTer8	p.R90Efs*8	ENST00000412916		89	gAa/ga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178136	56178137	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0024049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	29	465	0	ENST00000399503.3:c.3110_3111del	p.Lys1037ArgfsTer4	p.K1037Rfs*4	ENST00000399503	NM_005921.1	1037	AAa/a																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	49	570	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942739	44942739	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	35	497	0	ENST00000377967.4:c.3320delC	p.Pro1107LeufsTer13	p.P1107Lfs*13	ENST00000377967	NM_021140.2	1107	Cct/ct																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115749	8115749	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	50	510	2	ENST00000346208.3:c.1096del	p.Arg366GlufsTer38	p.R366Efs*38	ENST00000346208		365	aaC/aa																																																																															
CBFB	865	MSKCC	GRCh37	16	67070637	67070638	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	13	204	0	ENST00000412916.2:c.263dup	p.Leu88PhefsTer28	p.L88Ffs*28	ENST00000412916		87	-/T																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0024051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	102	773	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0024051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	79	690	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939160	36939160	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	78	780	0	ENST00000361632.4:c.549G>C	p.Gln183His	p.Q183H	ENST00000361632		183	caG/caC																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570039	95570039	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	115	589	0	ENST00000343455.3:c.3694A>T	p.Ser1232Cys	p.S1232C	ENST00000343455	NM_177438.2	1232	Agc/Tgc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274266	10274266	+	start_lost	Translation_Start_Site	SNP	C	C	A			P-0024051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	32	295	0	ENST00000330684.3:c.3G>T	p.Met1?	p.M1?	ENST00000330684	NM_001134407.1	1	atG/atT																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127276	55127276	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	47	484	0	ENST00000257290.5:c.64C>G	p.Leu22Val	p.L22V	ENST00000257290	NM_006206.4	22	Ctc/Gtc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86658399	86658400	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0024051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	19	243	0	ENST00000274376.6:c.1364_1365del	p.Asp455GlyfsTer6	p.D455Gfs*6	ENST00000274376	NM_002890.2	455	gAT/g																																																																															
STAG2	10735	MSKCC	GRCh37	X	123227928	123227928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	55	774	0	ENST00000218089.9:c.3639G>A	p.Met1213Ile	p.M1213I	ENST00000218089	NM_001042749.1	1213	atG/atA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	634	814	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	599	698	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																															
STK11	6794	MSKCC	GRCh37	19	1207092	1207092	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	723	837	0	ENST00000326873.7:c.180del	p.Tyr60Ter	p.Y60*	ENST00000326873	NM_000455.4	60	taC/ta																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226120	2226120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	50	649	2	ENST00000326181.6:c.1817C>T	p.Ala606Val	p.A606V	ENST00000326181	NM_032271.2	606	gCg/gTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971029	21971032	+	frameshift_variant	Frame_Shift_Del	DEL	CAGG	CAGG	-			P-0024065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	361	421	0	ENST00000304494.5:c.326_329del	p.Ala109GlyfsTer36	p.A109Gfs*36	ENST00000304494	NM_000077.4	109	gCCTGg/gg																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152860109	152860109	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	128	376	0	ENST00000406277.2:c.319G>T	p.Glu107Ter	p.E107*	ENST00000406277	NM_152274.4	107	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0024122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	146	509	3	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0024122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	280	692	1	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
TOP1	7150	MSKCC	GRCh37	20	39709868	39709870	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0024122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	109	371	0	ENST00000361337.2:c.504_506del	p.Glu169del	p.E169del	ENST00000361337	NM_003286.2	165	ctAGAa/cta																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245486	153245486	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	157	603	3	ENST00000281708.4:c.1705G>T	p.Glu569Ter	p.E569*	ENST00000281708	NM_033632.3	569	Gag/Tag																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245521	153245521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	120	484	0	ENST00000281708.4:c.1670G>T	p.Gly557Val	p.G557V	ENST00000281708	NM_033632.3	557	gGa/gTa																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175359	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	TTA			P-0024122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	39	350	0	ENST00000257430.4:c.4067_4068insTTA	p.Ser1356_Gly1357insTer	p.S1356_G1357ins*	ENST00000257430	NM_000038.5	1356	tca/tcTTAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	122	839	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0023585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	121	971	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	18	509	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68855921	68855921	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	26	584	2	ENST00000261769.5:c.1730del	p.Gly577GlufsTer7	p.G577Efs*7	ENST00000261769	NM_004360.3	577	Gga/ga																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230605	46230605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	10	728	1	ENST00000334344.6:c.854G>A	p.Arg285Gln	p.R285Q	ENST00000334344	NM_152641.2	285	cGg/cAg																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971292	13971292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	306	697	2	ENST00000405192.2:c.637C>T	p.Arg213Cys	p.R213C	ENST00000405192	NM_001163147.1	213	Cgc/Tgc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874092	151874093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	367	843	0	ENST00000262189.6:c.8445dupA	p.Ser2816IlefsTer6	p.S2816Ifs*6	ENST00000262189	NM_170606.2	2815	-/A																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856545	111856545	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1157707616		P-0023594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	124	429	0	ENST00000341259.2:c.596C>T	p.Ala199Val	p.A199V	ENST00000341259	NM_005475.2	199	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7572942	7572942	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	177	756	0	ENST00000269305.4:c.1167del	p.Pro390LeufsTer32	p.P390Lfs*32	ENST00000269305	NM_001126112.2	389	ggG/gg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470500	25470500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	218	925	0	ENST00000264709.3:c.974C>T	p.Thr325Ile	p.T325I	ENST00000264709	NM_175629.2	325	aCc/aTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249017	55249018	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0023596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	329	700	2	ENST00000275493.2:c.2317_2319dupCAC	p.His773dup	p.H773dup	ENST00000275493	NM_005228.3	773	ccc/ccCCAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	71	726	1	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16097825	16097825	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs73281920		P-0023596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	18	626	0	ENST00000268712.3:c.59A>C	p.Tyr20Ser	p.Y20S	ENST00000268712	NM_006311.3	20	tAt/tCt																																																																															
MGA	23269	MSKCC	GRCh37	15	42054402	42054402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	13	490	1	ENST00000219905.7:c.7586G>A	p.Arg2529Lys	p.R2529K	ENST00000219905	NM_001164273.1	2529	aGa/aAa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132468	11132468	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	11	713	0	ENST00000344626.4:c.2684A>T	p.Gln895Leu	p.Q895L	ENST00000344626	NM_003072.3	895	cAg/cTg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16097870	16097870	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs76145228		P-0023596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	17	260	0	ENST00000268712.3:c.14G>T	p.Gly5Val	p.G5V	ENST00000268712	NM_006311.3	5	gGt/gTt																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197240	26197240	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	13	479	1	ENST00000356476.2:c.239A>G	p.Lys80Arg	p.K80R	ENST00000356476		80	aAg/aGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0023597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	549	796	1	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157406018	157406018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	100	605	1	ENST00000346085.5:c.2260A>G	p.Ile754Val	p.I754V	ENST00000346085	NM_020732.3	754	Atc/Gtc																																																																															
MYC	4609	MSKCC	GRCh37	8	128750789	128750789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	1013	654	0	ENST00000377970.2:c.326C>G	p.Ser109Cys	p.S109C	ENST00000377970	NM_002467.4	109	tCc/tGc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317539	1317539	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0023597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	338	711	0				ENST00000381566																																																																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	123	891	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398280	25398281	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0023599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	138	904	0	ENST00000256078.4:c.36_38dup	p.Gly13dup	p.G13dup	ENST00000256078	NM_033360.2	13	ggc/ggTGGc																																																																															
NF1	4763	MSKCC	GRCh37	17	29550434	29550459	+	splice_region_variant,intron_variant	Splice_Region	DEL	AGTAACAATGAACTTTATGTTACTGC	AGTAACAATGAACTTTATGTTACTGC	-			P-0023599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	33	144	0	ENST00000358273.4:c.1722-26_1722-1del		p.X574_splice	ENST00000358273	NM_001042492.2	574																																																																																
NTRK2	4915	MSKCC	GRCh37	9	87339221	87339221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	128	834	0	ENST00000277120.3:c.803C>T	p.Ala268Val	p.A268V	ENST00000277120		268	gCg/gTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100916	27100916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	199	716	0	ENST00000324856.7:c.4198C>T	p.Pro1400Ser	p.P1400S	ENST00000324856	NM_006015.4	1400	Cct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	142	757	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RB1	5925	MSKCC	GRCh37	13	48881513	48881513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	263	507	0	ENST00000267163.4:c.235G>T	p.Glu79Ter	p.E79*	ENST00000267163	NM_000321.2	79	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0023974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	271	798	3	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591846	48591846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	267	720	0	ENST00000342988.3:c.1009G>A	p.Glu337Lys	p.E337K	ENST00000342988	NM_005359.5	337	Gag/Aag																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0023974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	175	650	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169953061	169953061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	228	664	0	ENST00000295797.4:c.145G>A	p.Gly49Ser	p.G49S	ENST00000295797	NM_002740.5	49	Ggc/Agc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619281	37619281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0024076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	171	503	0	ENST00000447079.4:c.957C>G	p.Tyr319Ter	p.Y319*	ENST00000447079	NM_015083.1	319	taC/taG																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618522	37618523	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	318	660	0	ENST00000447079.4:c.199dup	p.Ile67AsnfsTer8	p.I67Nfs*8	ENST00000447079	NM_015083.1	66	-/A																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015133	37015133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	381	886	1	ENST00000358127.4:c.271G>A	p.Ala91Thr	p.A91T	ENST00000358127	NM_001280556.1	91	Gcc/Acc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060783	38060794	+	inframe_deletion	In_Frame_Del	DEL	GATGGAGAACGG	GATGGAGAACGG	-			P-0024080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1284	360	1096	0	ENST00000250448.2:c.1195_1206del	p.Pro399_Ile402del	p.P399_I402del	ENST00000250448	NM_004496.3	399	CCGTTCTCCATC/-																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061152	38061202	+	inframe_deletion	In_Frame_Del	DEL	CCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTG	CCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTG	-			P-0024080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	398	296	0	ENST00000250448.2:c.787_837del	p.Gln263_Gly279del	p.Q263_G279del	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGG/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0024083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	413	589	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256416	16256416	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	184	560	0	ENST00000375759.3:c.3681G>C	p.Lys1227Asn	p.K1227N	ENST00000375759	NM_015001.2	1227	aaG/aaC																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936091	71936091	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	29	100	0	ENST00000298229.2:c.63G>A	p.Trp21Ter	p.W21*	ENST00000298229	NM_001567.3	21	tgG/tgA																																																																															
ALK	238	MSKCC	GRCh37	2	29416347	29416347	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	56	800	1	ENST00000389048.3:c.4606G>C	p.Glu1536Gln	p.E1536Q	ENST00000389048	NM_004304.4	1536	Gag/Cag																																																																															
CASP8	841	MSKCC	GRCh37	2	202149793	202149793	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	249	642	0	ENST00000358485.4:c.1234A>G	p.Lys412Glu	p.K412E	ENST00000358485	NM_001080125.1	412	Aaa/Gaa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71096093	71096093	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	35	254	0	ENST00000318789.4:c.664G>A	p.Gly222Ser	p.G222S	ENST00000318789	NM_032682.5	222	Ggc/Agc																																																																															
LYN	4067	MSKCC	GRCh37	8	56911041	56911041	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	172	612	0	ENST00000519728.1:c.1187A>G	p.Glu396Gly	p.E396G	ENST00000519728	NM_002350.3	396	gAg/gGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1369	52	790	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987025	36987025	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	52	630	0	ENST00000354822.5:c.664G>T	p.Glu222Ter	p.E222*	ENST00000354822	NM_001079668.2	222	Gag/Tag																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987031	36987031	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	47	628	0	ENST00000354822.5:c.658G>C	p.Glu220Gln	p.E220Q	ENST00000354822	NM_001079668.2	220	Gag/Cag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0024093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	127	547	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
B2M	567	MSKCC	GRCh37	15	45007794	45007794	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	67	433	0	ENST00000558401.1:c.241T>G	p.Ser81Ala	p.S81A	ENST00000558401	NM_004048.2	81	Tct/Gct																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469996	25469997	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	AGCTC			P-0024093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	82	534	0	ENST00000264709.3:c.1041_1045dup	p.Ser349Ter	p.S349*	ENST00000264709	NM_175629.2	349	tcg/tGAGCTcg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089778	27089778	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0024096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	105	585	0	ENST00000324856.7:c.2732+2T>G		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																																
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0023958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	45	844	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
TET2	54790	MSKCC	GRCh37	4	106155149	106155149	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	35	449	0	ENST00000380013.4:c.50T>G	p.Phe17Cys	p.F17C	ENST00000380013	NM_001127208.2	17	tTc/tGc																																																																															
RB1	5925	MSKCC	GRCh37	13	48936983	48936983	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	51	545	1	ENST00000267163.4:c.751C>T	p.Arg251Ter	p.R251*	ENST00000267163	NM_000321.2	251	Cga/Tga																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806119	1806119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	11	784	0	ENST00000260795.2:c.1138G>A	p.Gly380Arg	p.G380R	ENST00000260795		380	Ggg/Agg																																																																															
RB1	5925	MSKCC	GRCh37	13	48955419	48955419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0023984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	42	518	0	ENST00000267163.4:c.1535T>A	p.Leu512Ter	p.L512*	ENST00000267163	NM_000321.2	512	tTg/tAg																																																																															
RB1	5925	MSKCC	GRCh37	13	49027147	49027148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	60	580	0	ENST00000267163.4:c.1716dup	p.Ile573TyrfsTer2	p.I573Yfs*2	ENST00000267163	NM_000321.2	572	ctt/cTtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	392	872	1	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0023990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	686	797	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241873	72241873	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1252345844		P-0023990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	103	534	0	ENST00000357731.5:c.517C>T	p.Arg173Ter	p.R173*	ENST00000357731	NM_173808.2	173	Cga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307510	118307511	+	missense_variant	Missense_Mutation	DNP	TC	TC	GT			P-0023990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	358	785	1	ENST00000534358.1:c.283_284delinsGT	p.Ser95Val	p.S95V	ENST00000534358	NM_005933.3	95	TCa/GTa																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643689	38643689	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	415	882	0	ENST00000299084.4:c.1159T>A	p.Phe387Ile	p.F387I	ENST00000299084	NM_152594.2	387	Ttt/Att																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117803	70117803	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	175	714	0	ENST00000245479.2:c.271A>G	p.Met91Val	p.M91V	ENST00000245479	NM_000346.3	91	Atg/Gtg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	196	774	2	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11189845	11189845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	269	819	1	ENST00000361445.4:c.5664C>A	p.Phe1888Leu	p.F1888L	ENST00000361445	NM_004958.3	1888	ttC/ttA																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061224	38061237	+	protein_altering_variant	In_Frame_Del	DEL	CTCGAACATGTTGC	CTCGAACATGTTGC	ATGTT			P-0023928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	166	728	4	ENST00000250448.2:c.752_765delinsAACAT	p.Gly251_Glu255delinsGluHis	p.G251_E255delinsEH	ENST00000250448	NM_004496.3	251	gGCAACATGTTCGAG/gAACAT																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619285	37619286	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0023928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	171	607	0	ENST00000447079.4:c.962_963del	p.Gly321AlafsTer29	p.G321Afs*29	ENST00000447079	NM_015083.1	321	GGg/g																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627616	37627616	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	204	705	0	ENST00000447079.4:c.1531G>T	p.Glu511Ter	p.E511*	ENST00000447079	NM_015083.1	511	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0023933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	126	683	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0023933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	119	732	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0023933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	98	536	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546721	9546721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	62	391	0	ENST00000353224.5:c.1301C>T	p.Ala434Val	p.A434V	ENST00000353224	NM_177990.2	434	gCg/gTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604764	48604764	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0023933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	27	575	0	ENST00000342988.3:c.1586T>G	p.Leu529Ter	p.L529*	ENST00000342988	NM_005359.5	529	tTa/tGa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096009	178096009	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	61	583	0	ENST00000397062.3:c.1322T>C	p.Phe441Ser	p.F441S	ENST00000397062	NM_006164.4	441	tTc/tCc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275120	41275120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	95	460	1	ENST00000349496.5:c.1286G>A	p.Cys429Tyr	p.C429Y	ENST00000349496	NM_001904.3	429	tGc/tAc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851674	134851675	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	102	609	0	ENST00000398015.3:c.1085dup	p.Cys363ValfsTer12	p.C363Vfs*12	ENST00000398015	NM_004441.4	360	-/A																																																																															
PREX2	80243	MSKCC	GRCh37	8	69103959	69103959	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0023933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	48	770	0	ENST00000288368.4:c.4349C>A	p.Ala1450Glu	p.A1450E	ENST00000288368	NM_024870.2	1450	gCa/gAa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	57	623	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	54	508	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	57	602	0	ENST00000346208.3:c.1275dupA	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																																																															
RHOA	387	MSKCC	GRCh37	3	49405968	49405968	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	73	645	0	ENST00000418115.1:c.170T>C	p.Leu57Ser	p.L57S	ENST00000418115	NM_001664.2	57	tTg/tCg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873687	151873688	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGA			P-0023994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	108	712	0	ENST00000262189.6:c.8847_8850dup	p.Val2951SerfsTer18	p.V2951Sfs*18	ENST00000262189	NM_170606.2	2950	-/TCAT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878867	151878868	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0023994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	69	783	0	ENST00000262189.6:c.6077dup	p.Tyr2026Ter	p.Y2026*	ENST00000262189	NM_170606.2	2026	tat/taAt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111462	8111463	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGT			P-0023994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	71	721	0	ENST00000346208.3:c.949_951dup	p.Cys317dup	p.C317dup	ENST00000346208		317	-/TGT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	121	220	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160677	56160678	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	159	262	0	ENST00000399503.3:c.953dup	p.Leu318PhefsTer8	p.L318Ffs*8	ENST00000399503	NM_005921.1	317	-/T																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168719	56168720	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	146	207	0	ENST00000399503.3:c.1574dup	p.Gln526AlafsTer15	p.Q526Afs*15	ENST00000399503	NM_005921.1	525	cag/cAag																																																																															
LYN	4067	MSKCC	GRCh37	8	56912105	56912105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	102	324	0	ENST00000519728.1:c.1333C>T	p.Pro445Ser	p.P445S	ENST00000519728	NM_002350.3	445	Cca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	184	395	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																															
INSR	3643	MSKCC	GRCh37	19	7267440	7267440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	104	279	2	ENST00000302850.5:c.568G>A	p.Ala190Thr	p.A190T	ENST00000302850	NM_000208.2	190	Gcg/Acg																																																																															
BCL6	604	MSKCC	GRCh37	3	187444575	187444575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	191	377	0	ENST00000232014.4:c.1652G>A	p.Cys551Tyr	p.C551Y	ENST00000232014	NM_001130845.1	551	tGc/tAc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15838368	15838368	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	101	162	0	ENST00000307771.7:c.866G>T	p.Gly289Val	p.G289V	ENST00000307771	NM_005089.3	289	gGa/gTa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786706	3786706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	82	469	0	ENST00000262367.5:c.4505G>T	p.Trp1502Leu	p.W1502L	ENST00000262367	NM_004380.2	1502	tGg/tTg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0023825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	19	325	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0023825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	82	345	0	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
PRDM14	63978	MSKCC	GRCh37	8	70967599	70967599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	54	364	0	ENST00000276594.2:c.1424G>A	p.Ser475Asn	p.S475N	ENST00000276594	NM_024504.3	475	aGc/aAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862709	9862709	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0023825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	43	204	0	ENST00000330684.3:c.2594G>T	p.Arg865Met	p.R865M	ENST00000330684	NM_001134407.1	865	aGg/aTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248434	212248434	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	43	201	0	ENST00000342788.4:c.3833T>G	p.Val1278Gly	p.V1278G	ENST00000342788	NM_005235.2	1278	gTg/gGg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1953881	1953881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	17	518	0	ENST00000382891.5:c.2060G>T	p.Cys687Phe	p.C687F	ENST00000382891	NM_133335.3	687	tGc/tTc																																																																															
KDR	3791	MSKCC	GRCh37	4	55955557	55955557	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	21	394	0	ENST00000263923.4:c.3388T>C	p.Tyr1130His	p.Y1130H	ENST00000263923	NM_002253.2	1130	Tat/Cat																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270149	66270149	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	46	239	0	ENST00000273854.3:c.1733C>G	p.Ser578Cys	p.S578C	ENST00000273854	NM_004439.5	578	tCt/tGt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176618982	176618982	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	41	349	0	ENST00000439151.2:c.1025G>T	p.Cys342Phe	p.C342F	ENST00000439151	NM_022455.4	342	tGt/tTt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371000	55371000	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	64	355	0	ENST00000297316.4:c.302T>C	p.Met101Thr	p.M101T	ENST00000297316	NM_022454.3	101	aTg/aCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	54	330	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0023838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	113	376	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123325126	123325126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	53	471	0	ENST00000358487.5:c.202G>A	p.Ala68Thr	p.A68T	ENST00000358487	NM_000141.4	68	Gcc/Acc																																																																															
ATR	545	MSKCC	GRCh37	3	142297488	142297488	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	42	312	0	ENST00000350721.4:c.59G>A	p.Ser20Asn	p.S20N	ENST00000350721	NM_001184.3	20	aGt/aAt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518044	8518044	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	37	332	0	ENST00000356435.5:c.1347A>T	p.Gln449His	p.Q449H	ENST00000356435		449	caA/caT																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115911	8115912	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	133	448	0	ENST00000346208.3:c.1258dup	p.Thr420AsnfsTer87	p.T420Nfs*87	ENST00000346208		419	-/A																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575476	64575476	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	125	493	0	ENST00000337652.1:c.556C>G	p.His186Asp	p.H186D	ENST00000337652	NM_130803.2	186	Cat/Gat																																																																															
PGR	5241	MSKCC	GRCh37	11	100962595	100962595	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	28	401	0	ENST00000325455.5:c.1802A>G	p.Tyr601Cys	p.Y601C	ENST00000325455	NM_001202474.3	601	tAc/tGc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591132	67591134	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0023844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	32	185	0	ENST00000274335.5:c.1727_1729delCGA	p.Thr576del	p.T576del	ENST00000274335		575	aaGACg/aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68844109	68844110	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	59	336	0	ENST00000261769.5:c.698dupA	p.His233GlnfsTer11	p.H233Qfs*11	ENST00000261769	NM_004360.3	233	cac/cAac																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	62	462	1	ENST00000250448.2:c.749C>A	p.Ser250Tyr	p.S250Y	ENST00000250448	NM_004496.3	250	tCc/tAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260809	16260809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	38	312	1	ENST00000375759.3:c.8074G>A	p.Val2692Ile	p.V2692I	ENST00000375759	NM_015001.2	2692	Gtc/Atc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112540	115112932	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGACGTGGTGGTGGAGATCTTGGCCGCGTCGCAGGCCTCGGGGCCATGCTCCTCTTTGCTCTCGGCCTCGGCGTCGCTCTCACCCTCGCTGGGACATAAATCTACCACAGGCGAAGGAAAAAACCAAGGCAGAAGGGCGTTATCTCCAGTATGAGCCAACGGAACTCCAGTTCCCAAGTTGGAATCCCAGCTCGTGGCTTAGTGGCTGTGTAATCCCGGGGAAAGCCCCTTAGCCTCTCTGCACCTCAGTGTTGTCATCTGCAAAATGGGGATAATCGTGCCCAACAACATTGCTGGAAAATTCAATAAGCGATTATGAATTTAAAGTATTTACCCAGAGTTTAAACTTTCCCTTAGATGGACAATCCCCTAATCAGTAGCTCTTCTTATTTT	CGACGTGGTGGTGGAGATCTTGGCCGCGTCGCAGGCCTCGGGGCCATGCTCCTCTTTGCTCTCGGCCTCGGCGTCGCTCTCACCCTCGCTGGGACATAAATCTACCACAGGCGAAGGAAAAAACCAAGGCAGAAGGGCGTTATCTCCAGTATGAGCCAACGGAACTCCAGTTCCCAAGTTGGAATCCCAGCTCGTGGCTTAGTGGCTGTGTAATCCCGGGGAAAGCCCCTTAGCCTCTCTGCACCTCAGTGTTGTCATCTGCAAAATGGGGATAATCGTGCCCAACAACATTGCTGGAAAATTCAATAAGCGATTATGAATTTAAAGTATTTACCCAGAGTTTAAACTTTCCCTTAGATGGACAATCCCCTAATCAGTAGCTCTTCTTATTTT	-			P-0023845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	79	482	0	ENST00000257566.3:c.1100-292_1200del		p.X367_splice	ENST00000257566	NM_016569.3	367																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0023846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	112	328	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0023846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	14	150	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670847	134670847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	12	192	0	ENST00000398015.3:c.758G>T	p.Cys253Phe	p.C253F	ENST00000398015	NM_004441.4	253	tGc/tTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8375966	8375966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	22	182	0	ENST00000356435.5:c.4631C>T	p.Pro1544Leu	p.P1544L	ENST00000356435		1544	cCc/cTc																																																																															
RB1	5925	MSKCC	GRCh37	13	49030477	49030477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	24	256	0	ENST00000267163.4:c.1952del	p.Tyr651LeufsTer7	p.Y651Lfs*7	ENST00000267163	NM_000321.2	651	tAt/tt																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610059	81610059	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	25	230	0	ENST00000298171.2:c.1657G>C	p.Ala553Pro	p.A553P	ENST00000298171	NM_000369.2	553	Gcc/Ccc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222917	36222917	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0023846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	48	459	0	ENST00000222270.7:c.5546C>G	p.Ser1849Ter	p.S1849*	ENST00000222270	NM_014727.1	1849	tCa/tGa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528636	89528636	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	17	103	0	ENST00000336596.2:c.2936G>T	p.Gly979Val	p.G979V	ENST00000336596	NM_005233.5	979	gGc/gTc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727454	66727454	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	31	496	0	ENST00000307102.5:c.170A>C	p.Lys57Thr	p.K57T	ENST00000307102	NM_002755.3	57	aAg/aCg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2974161	2974161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	36	685	1	ENST00000396946.4:c.1444G>A	p.Glu482Lys	p.E482K	ENST00000396946	NM_032415.4	482	Gag/Aag																																																																															
STK40	83931	MSKCC	GRCh37	1	36820898	36820898	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	41	670	0	ENST00000373129.3:c.479A>T	p.Gln160Leu	p.Q160L	ENST00000373129	NM_032017.1	160	cAg/cTg																																																																															
RET	5979	MSKCC	GRCh37	10	43606858	43606858	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	42	784	0	ENST00000355710.3:c.1467C>A	p.Asp489Glu	p.D489E	ENST00000355710	NM_020975.4	489	gaC/gaA																																																																															
ATM	472	MSKCC	GRCh37	11	108183181	108183181	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	40	472	0	ENST00000278616.4:c.5962A>T	p.Ser1988Cys	p.S1988C	ENST00000278616	NM_000051.3	1988	Agc/Tgc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23635355	23635355	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	51	696	0	ENST00000261584.4:c.2809G>T	p.Gly937Ter	p.G937*	ENST00000261584	NM_024675.3	937	Gga/Tga																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955186	17955186	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	46	759	2	ENST00000458235.1:c.41G>T	p.Arg14Leu	p.R14L	ENST00000458235	NM_000215.3	14	cGt/cTt																																																																															
BARD1	580	MSKCC	GRCh37	2	215634037	215634037	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0023859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	31	484	1	ENST00000260947.4:c.1315-1G>T		p.X439_splice	ENST00000260947	NM_000465.2	439																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41100911	41100911	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	35	614	0	ENST00000373198.4:c.1445A>T	p.Glu482Val	p.E482V	ENST00000373198	NM_133170.3	482	gAa/gTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs530941076		P-0023860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	95	894	0	ENST00000269305.4:c.658T>C	p.Tyr220His	p.Y220H	ENST00000269305	NM_001126112.2	220	Tat/Cat																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0023860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	110	731	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073851	8073852	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0023860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	38	421	0	ENST00000377482.5:c.806_807dup	p.His270TyrfsTer26	p.H270Yfs*26	ENST00000377482	NM_018948.3	269	-/TA																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696658	47696658	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	60	810	0	ENST00000347630.2:c.290A>C	p.Glu97Ala	p.E97A	ENST00000347630	NM_001007230.1	97	gAa/gCa																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910371	29910371	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	73	996	2	ENST00000376809.5:c.41C>A	p.Ser14Ter	p.S14*	ENST00000376809	NM_002116.7	14	tCg/tAg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	69	416	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
CDH1	999	MSKCC	GRCh37	16	68846046	68846047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACGTATACCCTGGTGGTTCAAGCTGCTG			P-0023876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	45	465	0	ENST00000261769.5:c.1020_1047dup	p.Leu350ValfsTer9	p.L350Vfs*9	ENST00000261769	NM_004360.3	339	-/ACGTATACCCTGGTGGTTCAAGCTGCTG																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860361	151860371	+	frameshift_variant	Frame_Shift_Del	DEL	TGCTGCTCCAT	TGCTGCTCCAT	-			P-0023876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	72	361	0	ENST00000262189.6:c.10291_10301del	p.Met3431TrpfsTer6	p.M3431Wfs*6	ENST00000262189	NM_170606.2	3431	ATGGAGCAGCAt/t																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0023881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	58	340	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	62	466	0	ENST00000269305.4:c.747G>C	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agC																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104607	69104607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	75	411	0	ENST00000288368.4:c.4451G>A	p.Arg1484Gln	p.R1484Q	ENST00000288368	NM_024870.2	1484	cGa/cAa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646194	3646194	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	79	459	0	ENST00000294008.3:c.1884G>A	p.Trp628Ter	p.W628*	ENST00000294008	NM_032444.2	628	tgG/tgA																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508490	106508490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	24	189	0	ENST00000359195.3:c.484G>A	p.Val162Ile	p.V162I	ENST00000359195	NM_002649.2	162	Gtc/Atc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515375	103515375	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	25	279	0	ENST00000355739.4:c.1876T>C	p.Ser626Pro	p.S626P	ENST00000355739	NM_000123.3	626	Tct/Cct																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125232	47125232	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	47	390	0	ENST00000409792.3:c.6038T>G	p.Leu2013Arg	p.L2013R	ENST00000409792	NM_014159.6	2013	cTg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	267	475	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0023901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	129	436	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	63	191	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245496	46245496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	49	277	0	ENST00000334344.6:c.3590C>T	p.Ala1197Val	p.A1197V	ENST00000334344	NM_152641.2	1197	gCt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	360	709	0	ENST00000269305.4:c.392delA	p.Asn131ThrfsTer39	p.N131Tfs*39	ENST00000269305	NM_001126112.2	131	aAc/ac																																																																															
MST1	4485	MSKCC	GRCh37	3	49721489	49721489	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	197	458	1	ENST00000449682.2:c.2150G>A	p.Trp717Ter	p.W717*	ENST00000449682	NM_020998.3	717	tGg/tAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	123	403	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141492	11141492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	57	404	0	ENST00000344626.4:c.3469C>T	p.Arg1157Trp	p.R1157W	ENST00000344626	NM_003072.3	1157	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577024	7577045	+	frameshift_variant	Frame_Shift_Del	DEL	TTAGTGCTCCCTGGGGGCAGCT	TTAGTGCTCCCTGGGGGCAGCT	-			P-0023906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	106	390	0	ENST00000269305.4:c.893_914del	p.Glu298GlyfsTer40	p.E298Gfs*40	ENST00000269305	NM_001126112.2	298	gAGCTGCCCCCAGGGAGCACTAAg/gg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604704	48604704	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	50	282	1	ENST00000342988.3:c.1526G>A	p.Trp509Ter	p.W509*	ENST00000342988	NM_005359.5	509	tGg/tAg																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73110202	73110204	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0023906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	37	288	0	ENST00000356692.5:c.414_416del	p.Ser139del	p.S139del	ENST00000356692		137	cCTTct/cct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	25	455	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	39	607	0	ENST00000269305.4:c.379T>C	p.Ser127Pro	p.S127P	ENST00000269305	NM_001126112.2	127	Tcc/Ccc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	85	455	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587782289		P-0023916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	153	394	0	ENST00000269305.4:c.706T>C	p.Tyr236His	p.Y236H	ENST00000269305	NM_001126112.2	236	Tac/Cac																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99172029	99172029	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	51	308	0	ENST00000074304.5:c.1595T>C	p.Leu532Pro	p.L532P	ENST00000074304	NM_001134224.1	532	cTg/cCg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974676	21974677	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	A			P-0023916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	75	369	0	ENST00000304494.5:c.150_150+1insT	p.Val51CysfsTer69	p.V51Cfs*69	ENST00000304494	NM_000077.4	50	-/T																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47607098	47607100	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0021909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	71	609	0	ENST00000263735.4:c.852_854delTGT	p.Val285del	p.V285del	ENST00000263735	NM_002354.2	283	aTTGtt/att																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0023583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			980	135	830	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0023583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			742	91	688	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
STK11	6794	MSKCC	GRCh37	19	1218486	1218486	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	123	751	0	ENST00000326873.7:c.361G>T	p.Glu121Ter	p.E121*	ENST00000326873	NM_000455.4	121	Gag/Tag																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14380412	14380412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			268	82	264	0	ENST00000256196.4:c.5C>T	p.Ala2Val	p.A2V	ENST00000256196		2	gCc/gTc																																																																															
RB1	5925	MSKCC	GRCh37	13	49050880	49050880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			232	36	603	1	ENST00000267163.4:c.2564G>A	p.Ser855Asn	p.S855N	ENST00000267163	NM_000321.2	855	aGc/aAc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23637570	23637570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			549	80	701	0	ENST00000261584.4:c.2735G>T	p.Trp912Leu	p.W912L	ENST00000261584	NM_024675.3	912	tGg/tTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117568	70117568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			650	133	652	0	ENST00000245479.2:c.36C>A	p.Asp12Glu	p.D12E	ENST00000245479	NM_000346.3	12	gaC/gaA																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602745	10602745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			847	194	844	0	ENST00000171111.5:c.833C>T	p.Pro278Leu	p.P278L	ENST00000171111	NM_203500.1	278	cCg/cTg																																																																															
CENPA	1058	MSKCC	GRCh37	2	27015081	27015081	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			636	81	541	0	ENST00000335756.4:c.183G>T	p.Leu61Phe	p.L61F	ENST00000335756	NM_001809.3	61	ttG/ttT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530186	212530186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			325	34	498	1	ENST00000342788.4:c.1733C>T	p.Thr578Ile	p.T578I	ENST00000342788	NM_005235.2	578	aCa/aTa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46255889	46255889	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			153	35	438	2	ENST00000371998.3:c.501G>T	p.Lys167Asn	p.K167N	ENST00000371998		167	aaG/aaT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169024	32169024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			881	94	898	0	ENST00000375023.3:c.4009G>A	p.Asp1337Asn	p.D1337N	ENST00000375023	NM_004557.3	1337	Gac/Aac																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0023866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	10	385	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	16	410	0	ENST00000349496.5:c.94G>C	p.Asp32His	p.D32H	ENST00000349496	NM_001904.3	32	Gac/Cac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178942554	178942554	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	148	521	0	ENST00000263967.3:c.2361C>G	p.Asp787Glu	p.D787E	ENST00000263967	NM_006218.2	787	gaC/gaG																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1906093	1906093	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	490	730	0	ENST00000382891.5:c.748A>G	p.Thr250Ala	p.T250A	ENST00000382891	NM_133335.3	250	Acc/Gcc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	126	673	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913559	32913559	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	110	646	4	ENST00000380152.3:c.5073del	p.Lys1691AsnfsTer15	p.K1691Nfs*15	ENST00000380152		1689	gcA/gc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	67	385	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	58	415	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717769	89717770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	75	437	0	ENST00000371953.3:c.800dup	p.Asp268GlyfsTer30	p.D268Gfs*30	ENST00000371953	NM_000314.4	265	cta/ctAa																																																																															
AXL	558	MSKCC	GRCh37	19	41743932	41743933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778012871		P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	156	1231	6	ENST00000301178.4:c.874dup	p.His292ProfsTer47	p.H292Pfs*47	ENST00000301178	NM_021913.4	289	-/C																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797258	135797258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	54	369	0	ENST00000298552.3:c.611G>A	p.Arg204His	p.R204H	ENST00000298552	NM_001162426.1	204	cGt/cAt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18524215	18524215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	124	856	2	ENST00000266497.5:c.1727C>T	p.Ala576Val	p.A576V	ENST00000266497		576	gCg/gTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187534473	187534473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	91	473	0	ENST00000441802.2:c.9253delC	p.Asp3086IlefsTer30	p.D3086Ifs*30	ENST00000441802	NM_005245.3	3085	Ctt/tt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	90	683	2	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166916	32166916	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	187	1167	4	ENST00000375023.3:c.4322del	p.Pro1441LeufsTer17	p.P1441Lfs*17	ENST00000375023	NM_004557.3	1441	cCt/ct																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	38	662	2	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074255	8074255	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	86	642	0	ENST00000377482.5:c.404delA	p.Asn135ThrfsTer40	p.N135Tfs*40	ENST00000377482	NM_018948.3	135	aAc/ac																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588108	69588108	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	100	741	0	ENST00000168712.1:c.590T>C	p.Met197Thr	p.M197T	ENST00000168712	NM_002007.2	197	aTg/aCg																																																																															
APC	324	MSKCC	GRCh37	5	112175880	112175880	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	35	302	0	ENST00000257430.4:c.4592delA	p.Asn1531MetfsTer34	p.N1531Mfs*34	ENST00000257430	NM_000038.5	1530	gAa/ga																																																																															
ETV6	2120	MSKCC	GRCh37	12	11905406	11905406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	89	530	0	ENST00000396373.4:c.56C>A	p.Pro19His	p.P19H	ENST00000396373	NM_001987.4	19	cCt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249361	153249361	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	71	618	1	ENST00000281708.4:c.1417delA	p.Arg473GlufsTer25	p.R473Efs*25	ENST00000281708	NM_033632.3	473	Aga/ga																																																																															
PMS1	5378	MSKCC	GRCh37	2	190682810	190682810	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	143	578	4	ENST00000441310.2:c.492delA	p.Lys164AsnfsTer6	p.K164Nfs*6	ENST00000441310	NM_000534.4	162	gcA/gc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	102	674	0	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129421	152129421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	138	588	0	ENST00000206249.3:c.374G>A	p.Gly125Asp	p.G125D	ENST00000206249	NM_000125.3	125	gGc/gAc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176516607	176516607	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs545721160		P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	154	912	5	ENST00000292408.4:c.4C>T	p.Arg2Trp	p.R2W	ENST00000292408	NM_213647.1	2	Cgg/Tgg																																																																															
JUN	3725	MSKCC	GRCh37	1	59248285	59248285	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	22	192	0	ENST00000371222.2:c.458del	p.Gly153AlafsTer29	p.G153Afs*29	ENST00000371222	NM_002228.3	153	gGc/gc																																																																															
YAP1	10413	MSKCC	GRCh37	11	101981614	101981614	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	54	412	0	ENST00000282441.5:c.40del	p.Gln14ArgfsTer60	p.Q14Rfs*60	ENST00000282441	NM_001130145.2	12	gCc/gc																																																																															
POLE	5426	MSKCC	GRCh37	12	133218894	133218894	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	145	1003	2	ENST00000320574.5:c.5042A>G	p.Asn1681Ser	p.N1681S	ENST00000320574	NM_006231.2	1681	aAc/aGc																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133898	41133898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	70	449	1	ENST00000379561.5:c.1730del	p.Gly577AlafsTer5	p.G577Afs*5	ENST00000379561	NM_002015.3	577	gGc/gc																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987036	36987036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	134	748	0	ENST00000354822.5:c.653C>T	p.Ala218Val	p.A218V	ENST00000354822	NM_001079668.2	218	gCg/gTg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060881	38060881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	115	792	0	ENST00000250448.2:c.1108G>A	p.Val370Met	p.V370M	ENST00000250448	NM_004496.3	370	Gtg/Atg																																																																															
MGA	23269	MSKCC	GRCh37	15	42041897	42041898	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	92	670	0	ENST00000219905.7:c.6095dup	p.Leu2032PhefsTer3	p.L2032Ffs*3	ENST00000219905	NM_001164273.1	2031	cat/caTt																																																																															
BLM	641	MSKCC	GRCh37	15	91308643	91308643	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	51	465	0	ENST00000355112.3:c.2192A>G	p.Asp731Gly	p.D731G	ENST00000355112	NM_000057.2	731	gAt/gGt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778123	3778123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	175	1164	1	ENST00000262367.5:c.6925G>T	p.Gly2309Cys	p.G2309C	ENST00000262367	NM_004380.2	2309	Ggc/Tgc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783668	50783668	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	111	828	2	ENST00000398568.2:c.64del	p.Tyr22ThrfsTer25	p.Y22Tfs*25	ENST00000398568	NM_001042412.1	20	aTt/at																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822604	72822604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	92	672	0	ENST00000268489.5:c.9571G>A	p.Gly3191Ser	p.G3191S	ENST00000268489	NM_006885.3	3191	Ggc/Agc																																																																															
AURKB	9212	MSKCC	GRCh37	17	8111109	8111109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	123	963	0	ENST00000585124.1:c.98C>A	p.Pro33His	p.P33H	ENST00000585124	NM_004217.3	33	cCt/cAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883579	37883579	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	49	812	0	ENST00000269571.5:c.3191A>G	p.Glu1064Gly	p.E1064G	ENST00000269571		1064	gAg/gGg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120114	70120115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	28	177	0	ENST00000245479.2:c.1121dup	p.Gln375AlafsTer203	p.Q375Afs*203	ENST00000245479	NM_000346.3	372	-/C																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292565	15292565	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	169	1054	1	ENST00000263388.2:c.2614del	p.Ser872ProfsTer21	p.S872Pfs*21	ENST00000263388	NM_000435.2	872	Tcc/cc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353876	15353876	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	152	918	0	ENST00000263377.2:c.3004A>G	p.Met1002Val	p.M1002V	ENST00000263377	NM_058243.2	1002	Atg/Gtg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18961008	18961008	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	181	937	0	ENST00000262803.5:c.586T>C	p.Phe196Leu	p.F196L	ENST00000262803	NM_002911.3	196	Ttc/Ctc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36208929	36208935	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCG	GGCGGCG	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	10	61	0	ENST00000222270.7:c.17_23del	p.Gly6AlafsTer38	p.G6Afs*38	ENST00000222270	NM_014727.1	3	gcGGCGGCG/gc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224387	36224387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	236	1170	0	ENST00000222270.7:c.6937G>A	p.Val2313Ile	p.V2313I	ENST00000222270	NM_014727.1	2313	Gtt/Att																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794356	242794356	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144217487		P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	104	892	3	ENST00000334409.5:c.586G>A	p.Ala196Thr	p.A196T	ENST00000334409	NM_005018.2	196	Gca/Aca																																																																															
ASXL1	171023	MSKCC	GRCh37	20	30956834	30956834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	72	706	2	ENST00000375687.4:c.160G>A	p.Ala54Thr	p.A54T	ENST00000375687	NM_015338.5	54	Gca/Aca																																																																															
EP300	2033	MSKCC	GRCh37	22	41566478	41566478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	40	654	2	ENST00000263253.7:c.4355C>A	p.Pro1452His	p.P1452H	ENST00000263253	NM_001429.3	1452	cCt/cAt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30648401	30648401	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	40	723	0	ENST00000359013.4:c.26T>C	p.Leu9Pro	p.L9P	ENST00000359013	NM_001024847.2	9	cTg/cCg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277224	41277224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	50	447	0	ENST00000349496.5:c.1693C>T	p.Arg565Cys	p.R565C	ENST00000349496	NM_001904.3	565	Cgc/Tgc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72842190	72842190	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	71	379	0	ENST00000325599.8:c.1061-3T>C		p.X354_splice	ENST00000325599	NM_018130.2	354																																																																																
FAT1	2195	MSKCC	GRCh37	4	187521091	187521091	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	96	570	0	ENST00000441802.2:c.12064T>C	p.Cys4022Arg	p.C4022R	ENST00000441802	NM_005245.3	4022	Tgc/Cgc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324019	31324020	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	90	339	0	ENST00000412585.2:c.543_544del	p.Arg181SerfsTer26	p.R181Sfs*26	ENST00000412585	NM_005514.6	181	agAGcc/agcc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265509	152265509	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	105	723	0	ENST00000206249.3:c.962A>G	p.Asp321Gly	p.D321G	ENST00000206249	NM_000125.3	321	gAt/gGt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522089	157522089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	111	657	1	ENST00000346085.5:c.4361C>T	p.Ser1454Leu	p.S1454L	ENST00000346085	NM_020732.3	1454	tCg/tTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921610	39921610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	136	363	0	ENST00000378444.4:c.4210A>G	p.Ser1404Gly	p.S1404G	ENST00000378444	NM_001123385.1	1404	Agt/Ggt																																																																															
AR	367	MSKCC	GRCh37	X	66931394	66931394	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	130	438	0	ENST00000374690.3:c.2036A>G	p.Glu679Gly	p.E679G	ENST00000374690	NM_000044.3	679	gAa/gGa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	96	549	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	151	566	3	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	27	366	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	51	286	1	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	217	724	1	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	206	657	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372184	55372184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	163	407	0	ENST00000297316.4:c.874G>A	p.Ala292Thr	p.A292T	ENST00000297316	NM_022454.3	292	Gcc/Acc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220116	5220116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	170	604	0	ENST00000357368.4:c.3599G>A	p.Arg1200His	p.R1200H	ENST00000357368	NM_002850.3	1200	cGt/cAt																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111907683	111907683	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146318804		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	127	448	1	ENST00000393256.3:c.457C>T	p.Arg153Trp	p.R153W	ENST00000393256	NM_006538.4	153	Cgg/Tgg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116263	209116263	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	76	386	2	ENST00000345146.2:c.13delA	p.Ile5SerfsTer7	p.I5Sfs*7	ENST00000345146	NM_005896.2	5	Atc/tc																																																																															
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	213	843	4	ENST00000575354.2:c.3743delC	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																															
CASP8	841	MSKCC	GRCh37	2	202141587	202141587	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771150445		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	126	514	4	ENST00000358485.4:c.875G>A	p.Arg292Gln	p.R292Q	ENST00000358485	NM_001080125.1	292	cGg/cAg																																																																															
YAP1	10413	MSKCC	GRCh37	11	102076740	102076740	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	43	585	2	ENST00000282441.5:c.919C>T	p.Arg307Ter	p.R307*	ENST00000282441	NM_001130145.2	307	Cga/Tga																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413100	139413100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	216	865	4	ENST00000277541.6:c.1042G>A	p.Ala348Thr	p.A348T	ENST00000277541	NM_017617.3	348	Gcc/Acc																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	90	634	0	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	175	684	1	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157150512	157150512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	136	542	1	ENST00000346085.5:c.1694G>A	p.Arg565Gln	p.R565Q	ENST00000346085	NM_020732.3	565	cGg/cAg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	72	234	0	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435201	18435202	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	17	292	0	ENST00000266497.5:c.192dup	p.Val65CysfsTer16	p.V65Cfs*16	ENST00000266497		62	-/T																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	203	819	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	135	736	14	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836386	89836386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	32	634	0	ENST00000389301.3:c.2363C>T	p.Ala788Val	p.A788V	ENST00000389301	NM_000135.2	788	gCc/gTc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	207	730	3	ENST00000382891.5:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382891	NM_133335.3	1341	Ccc/cc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	204	690	2	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	59	914	1	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																															
TERT	7015	MSKCC	GRCh37	5	1294470	1294470	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	103	618	0	ENST00000310581.5:c.531G>C	p.Gln177His	p.Q177H	ENST00000310581	NM_198253.2	177	caG/caC																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519504	137519505	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	175	382	5	ENST00000367739.4:c.1132_1133dupAG	p.Ser378ArgfsTer6	p.S378Rfs*6	ENST00000367739	NM_000416.2	378	agt/agAGt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137309069	137309069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	54	1055	2	ENST00000481739.1:c.676G>A	p.Ala226Thr	p.A226T	ENST00000481739	NM_002957.4	226	Gcc/Acc																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2492062	2492062	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	167	739	0	ENST00000355716.4:c.461-1G>T		p.X154_splice	ENST00000355716	NM_003820.2	154																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27023819	27023819	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	180	452	0	ENST00000324856.7:c.925C>T	p.Gln309Ter	p.Q309*	ENST00000324856	NM_006015.4	309	Cag/Tag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466317	120466317	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	39	579	0	ENST00000256646.2:c.4802A>C	p.Lys1601Thr	p.K1601T	ENST00000256646	NM_024408.3	1601	aAg/aCg																																																																															
YAP1	10413	MSKCC	GRCh37	11	102098259	102098259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	69	621	0	ENST00000282441.5:c.1223G>A	p.Ser408Asn	p.S408N	ENST00000282441	NM_001130145.2	408	aGt/aAt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864125	57864125	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	216	702	0	ENST00000228682.2:c.1607del	p.Pro536GlnfsTer77	p.P536Qfs*77	ENST00000228682	NM_005269.2	534	ggC/gg																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38591665	38591665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147204964		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	186	596	1	ENST00000299084.4:c.124G>A	p.Val42Ile	p.V42I	ENST00000299084	NM_152594.2	42	Gtc/Atc																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2647662	2647662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	175	614	1	ENST00000342085.4:c.1565C>T	p.Thr522Met	p.T522M	ENST00000342085	NM_002613.4	522	aCg/aTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807811	3807811	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	96	391	0	ENST00000262367.5:c.3608A>G	p.Lys1203Arg	p.K1203R	ENST00000262367	NM_004380.2	1203	aAg/aGg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47700132	47700132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	170	526	1	ENST00000347630.2:c.41C>T	p.Ser14Leu	p.S14L	ENST00000347630	NM_001007230.1	14	tCg/tTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435981	56435981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	92	363	1	ENST00000407977.2:c.1156C>T	p.Arg386Trp	p.R386W	ENST00000407977		386	Cgg/Tgg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120507	70120508	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	324	974	0	ENST00000245479.2:c.1510dup	p.Thr504AsnfsTer74	p.T504Nfs*74	ENST00000245479	NM_000346.3	503	-/A																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612347	1612347	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200962332		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	423	878	1	ENST00000344749.5:c.1672C>T	p.Arg558Cys	p.R558C	ENST00000344749	NM_001136139.2	558	Cgc/Tgc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210490	5210490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	102	643	0	ENST00000357368.4:c.5477C>T	p.Thr1826Ile	p.T1826I	ENST00000357368	NM_002850.3	1826	aCa/aTa																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220916	36220916	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	87	375	0	ENST00000222270.7:c.4966del	p.Ser1656ProfsTer40	p.S1656Pfs*40	ENST00000222270	NM_014727.1	1656	Tcc/cc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753149	42753151	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs199960550		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	153	608	6	ENST00000222329.4:c.1113_1115del	p.Ser373del	p.S373del	ENST00000222329	NM_006494.2	371	tcTTCc/tcc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45860949	45860951	+	inframe_deletion	In_Frame_Del	DEL	TGG	TGG	-			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	216	804	0	ENST00000391945.4:c.1244_1246del	p.Thr415del	p.T415del	ENST00000391945	NM_000400.3	415	aCCAtc/atc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39222519	39222520	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	117	575	0	ENST00000402219.2:c.3090dup	p.Tyr1031IlefsTer2	p.Y1031Ifs*2	ENST00000402219	NM_005633.3	1030	-/A																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662935	227662935	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	205	785	0	ENST00000305123.5:c.520G>T	p.Gly174Cys	p.G174C	ENST00000305123	NM_005544.2	174	Ggt/Tgt																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62321727	62321729	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	151	682	0	ENST00000508582.2:c.2423_2425del	p.Phe808del	p.F808del	ENST00000508582		806	ccCTTc/ccc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121088	29121088	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	160	820	0	ENST00000328354.6:c.469A>G	p.Ile157Val	p.I157V	ENST00000328354	NM_007194.3	157	Att/Gtt																																																																															
EP300	2033	MSKCC	GRCh37	22	41527461	41527461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs140538515		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	34	738	0	ENST00000263253.7:c.1352C>A	p.Pro451His	p.P451H	ENST00000263253	NM_001429.3	451	cCc/cAc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52582176	52582176	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	140	422	0	ENST00000394830.3:c.4652C>G	p.Ala1551Gly	p.A1551G	ENST00000394830	NM_018313.4	1551	gCc/gGc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1956908	1956908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	253	940	0	ENST00000382891.5:c.2359C>T	p.Arg787Cys	p.R787C	ENST00000382891	NM_133335.3	787	Cgc/Tgc																																																																															
KIT	3815	MSKCC	GRCh37	4	55564725	55564725	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	124	482	0	ENST00000288135.5:c.613A>T	p.Arg205Trp	p.R205W	ENST00000288135	NM_000222.2	205	Agg/Tgg																																																																															
MSH3	4437	MSKCC	GRCh37	5	80064779	80064780	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	70	543	0	ENST00000265081.6:c.2216dup	p.Asn739LysfsTer29	p.N739Kfs*29	ENST00000265081	NM_002439.4	737	cta/ctAa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131977952	131977952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	85	510	0	ENST00000265335.6:c.3835C>T	p.Arg1279Cys	p.R1279C	ENST00000265335		1279	Cgt/Tgt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149440424	149440424	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	106	598	0	ENST00000286301.3:c.1969+1G>A		p.X657_splice	ENST00000286301	NM_005211.3	657																																																																																
HLA-A	3105	MSKCC	GRCh37	6	29911108	29911108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	153	956	0	ENST00000376809.5:c.407G>A	p.Gly136Glu	p.G136E	ENST00000376809	NM_002116.7	136	gGg/gAg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152420068	152420068	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	48	437	0	ENST00000206249.3:c.1759delG	p.Glu587ArgfsTer20	p.E587Rfs*20	ENST00000206249	NM_000125.3	585	acG/ac																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522556	157522556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	147	769	1	ENST00000346085.5:c.4828C>A	p.Pro1610Thr	p.P1610T	ENST00000346085	NM_020732.3	1610	Cct/Act																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38133227	38133227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	257	793	2	ENST00000317025.8:c.4246C>T	p.Pro1416Ser	p.P1416S	ENST00000317025	NM_023034.1	1416	Cca/Tca																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38272115	38272115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	45	753	0	ENST00000425967.3:c.2103G>T	p.Glu701Asp	p.E701D	ENST00000425967	NM_001174067.1	701	gaG/gaT																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900296	101900296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	79	504	1	ENST00000374994.4:c.730C>T	p.Arg244Cys	p.R244C	ENST00000374994	NM_004612.2	244	Cgt/Tgt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934222	39934222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	256	834	4	ENST00000378444.4:c.377C>T	p.Pro126Leu	p.P126L	ENST00000378444	NM_001123385.1	126	cCg/cTg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11259681	11259681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	174	834	2	ENST00000361445.4:c.4024G>A	p.Glu1342Lys	p.E1342K	ENST00000361445	NM_004958.3	1342	Gag/Aag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16257770	16257770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	148	706	3	ENST00000375759.3:c.5035G>A	p.Val1679Ile	p.V1679I	ENST00000375759	NM_015001.2	1679	Gtc/Atc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260837	16260837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	236	740	0	ENST00000375759.3:c.8102C>T	p.Thr2701Met	p.T2701M	ENST00000375759	NM_015001.2	2701	aCg/aTg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023021	27023021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	39	133	0	ENST00000324856.7:c.127G>A	p.Ala43Thr	p.A43T	ENST00000324856	NM_006015.4	43	Gca/Aca																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097751	27097751	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	176	829	1	ENST00000324856.7:c.3344del	p.Pro1115GlnfsTer46	p.P1115Qfs*46	ENST00000324856	NM_006015.4	1114	Ccc/cc																																																																															
NUF2	83540	MSKCC	GRCh37	1	163297333	163297333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	91	914	3	ENST00000271452.3:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000271452	NM_145697.2	60	cGa/cAa																																																																															
CDC73	79577	MSKCC	GRCh37	1	193117069	193117069	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	59	681	4	ENST00000367435.3:c.802C>T	p.Arg268Ter	p.R268*	ENST00000367435	NM_024529.4	268	Cga/Tga																																																																															
PARP1	142	MSKCC	GRCh37	1	226567719	226567719	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	35	725	1	ENST00000366794.5:c.1447delG	p.Ala483GlnfsTer3	p.A483Qfs*3	ENST00000366794	NM_001618.3	483	Gca/ca																																																																															
PARP1	142	MSKCC	GRCh37	1	226568823	226568823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	195	961	0	ENST00000366794.5:c.1246G>A	p.Gly416Arg	p.G416R	ENST00000366794	NM_001618.3	416	Ggg/Agg																																																																															
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765123636		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	79	469	5	ENST00000369902.3:c.71dup	p.Ala25GlyfsTer23	p.A25Gfs*23	ENST00000369902	NM_016169.3	22	gcc/gCcc																																																																															
WT1	7490	MSKCC	GRCh37	11	32450167	32450167	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	147	718	0	ENST00000332351.3:c.647-2A>G		p.X216_splice	ENST00000332351	NM_024426.4	216																																																																																
BIRC3	330	MSKCC	GRCh37	11	102195382	102195382	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	128	599	0	ENST00000263464.3:c.142A>G	p.Arg48Gly	p.R48G	ENST00000263464	NM_001165.4	48	Agg/Ggg																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125514480	125514480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	85	679	1	ENST00000428830.2:c.1175G>A	p.Cys392Tyr	p.C392Y	ENST00000428830	NM_001114121.2	392	tGc/tAc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	139	718	20	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287469	46287469	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	88	874	1	ENST00000334344.6:c.5333del	p.Asn1778IlefsTer13	p.N1778Ifs*13	ENST00000334344	NM_152641.2	1776	ttA/tt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49418606	49418606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	223	763	2	ENST00000301067.7:c.15908G>A	p.Arg5303His	p.R5303H	ENST00000301067	NM_003482.3	5303	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	212	969	2	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489535	56489535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	176	839	0	ENST00000267101.3:c.2000G>A	p.Arg667His	p.R667H	ENST00000267101	NM_001982.3	667	cGt/cAt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56489582	56489582	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56387488		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	134	736	0	ENST00000267101.3:c.2047C>T	p.Arg683Trp	p.R683W	ENST00000267101	NM_001982.3	683	Cgg/Tgg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860150	57860150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	46	868	3	ENST00000228682.2:c.890G>A	p.Gly297Asp	p.G297D	ENST00000228682	NM_005269.2	297	gGc/gAc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	200	863	13	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562802	21562802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	146	805	0	ENST00000382592.4:c.1117G>A	p.Ala373Thr	p.A373T	ENST00000382592	NM_014572.2	373	Gcc/Acc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28891686	28891686	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143726778		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	179	892	0	ENST00000282397.4:c.3335G>A	p.Arg1112His	p.R1112H	ENST00000282397	NM_002019.4	1112	cGc/cAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	29012359	29012359	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	93	703	0	ENST00000282397.4:c.512del	p.Lys171SerfsTer7	p.K171Sfs*7	ENST00000282397	NM_002019.4	171	aAg/ag																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986940	36986940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	44	801	3	ENST00000354822.5:c.749C>T	p.Ala250Val	p.A250V	ENST00000354822	NM_001079668.2	250	gCc/gTc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422161	81422161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	158	709	3	ENST00000298171.2:c.137G>A	p.Arg46His	p.R46H	ENST00000298171	NM_000369.2	46	cGc/cAc																																																																															
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	335	720	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473780	67473780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	34	729	0	ENST00000327367.4:c.860G>A	p.Arg287Gln	p.R287Q	ENST00000327367	NM_005902.3	287	cGg/cAg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99442709	99442709	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	45	740	0	ENST00000268035.6:c.1106A>G	p.Asn369Ser	p.N369S	ENST00000268035	NM_000875.3	369	aAc/aGc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347982	347983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	190	993	0	ENST00000262320.3:c.1523dup	p.Ala509CysfsTer82	p.A509Cfs*82	ENST00000262320	NM_003502.3	508	ggt/ggGt																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	161	901	0	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640538	3640538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150453226		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	234	930	5	ENST00000294008.3:c.3101G>A	p.Arg1034His	p.R1034H	ENST00000294008	NM_032444.2	1034	cGc/cAc																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30133311	30133311	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200617125		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	227	764	0	ENST00000263025.4:c.187G>A	p.Val63Met	p.V63M	ENST00000263025	NM_002746.2	63	Gtg/Atg																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645104	67645105	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	156	1000	2	ENST00000264010.4:c.370_371del	p.Val124ThrfsTer15	p.V124Tfs*15	ENST00000264010	NM_006565.3	123	acTGta/acta																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81965144	81965144	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	171	831	0	ENST00000359376.3:c.2624T>C	p.Ile875Thr	p.I875T	ENST00000359376	NM_002661.3	875	aTc/aCc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805103	89805103	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147406377		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	194	652	1	ENST00000389301.3:c.4274G>A	p.Arg1425His	p.R1425H	ENST00000389301	NM_000135.2	1425	cGt/cAt																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16024480	16024480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	188	610	0	ENST00000268712.3:c.1738C>T	p.Arg580Cys	p.R580C	ENST00000268712	NM_006311.3	580	Cgc/Tgc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	214	891	7	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879810	37879810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	143	582	2	ENST00000269571.5:c.2105C>T	p.Pro702Leu	p.P702L	ENST00000269571		702	cCt/cTt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	149	630	2	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453399	40453399	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs759027671		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	278	1096	13	ENST00000345506.4:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000345506	NM_003152.3	366	Ccc/cc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	371	786	10	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
CD79B	974	MSKCC	GRCh37	17	62007451	62007451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	164	703	0	ENST00000392795.3:c.416C>T	p.Thr139Ile	p.T139I	ENST00000392795	NM_001039933.1	139	aCa/aTa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604782	48604782	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	280	696	1	ENST00000342988.3:c.1604T>C	p.Leu535Pro	p.L535P	ENST00000342988	NM_005359.5	535	cTc/cCc																																																																															
STK11	6794	MSKCC	GRCh37	19	1226617	1226617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	188	642	4	ENST00000326873.7:c.1273C>T	p.Arg425Cys	p.R425C	ENST00000326873	NM_000455.4	425	Cgc/Tgc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226274	2226274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	238	1009	5	ENST00000398665.3:c.3754G>A	p.Gly1252Ser	p.G1252S	ENST00000398665	NM_032482.2	1252	Ggc/Agc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5211674	5211674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	255	955	3	ENST00000357368.4:c.5161C>T	p.Arg1721Trp	p.R1721W	ENST00000357368	NM_002850.3	1721	Cgg/Tgg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10247835	10247835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	213	1005	1	ENST00000340748.4:c.4367G>T	p.Arg1456Leu	p.R1456L	ENST00000340748		1456	cGg/cTg																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10262139	10262139	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	288	1073	9	ENST00000340748.4:c.2152delA	p.Met718CysfsTer59	p.M718Cfs*59	ENST00000340748		718	Atg/tg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599874	10599874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	292	894	3	ENST00000171111.5:c.1702G>A	p.Val568Ile	p.V568I	ENST00000171111	NM_203500.1	568	Gtc/Atc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11152139	11152139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	239	870	4	ENST00000344626.4:c.4327C>T	p.Arg1443Cys	p.R1443C	ENST00000344626	NM_003072.3	1443	Cgc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15276714	15276714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	206	866	3	ENST00000263388.2:c.5551C>T	p.Arg1851Cys	p.R1851C	ENST00000263388	NM_000435.2	1851	Cgt/Tgt																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354232	15354232	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	347	1042	0	ENST00000263377.2:c.2648A>T	p.Lys883Met	p.K883M	ENST00000263377	NM_058243.2	883	aAg/aTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214639	36214639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	267	912	1	ENST00000222270.7:c.3065C>T	p.Thr1022Met	p.T1022M	ENST00000222270	NM_014727.1	1022	aCg/aTg																																																																															
AKT2	208	MSKCC	GRCh37	19	40743886	40743886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	259	810	0	ENST00000392038.2:c.821G>A	p.Arg274His	p.R274H	ENST00000392038	NM_001626.4	274	cGc/cAc																																																																															
AXL	558	MSKCC	GRCh37	19	41765712	41765712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	271	836	7	ENST00000301178.4:c.2588C>T	p.Ala863Val	p.A863V	ENST00000301178	NM_021913.4	863	gCt/gTt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902191	50902191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	156	965	1	ENST00000440232.2:c.83C>T	p.Ala28Val	p.A28V	ENST00000440232	NM_002691.3	28	gCa/gTa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906786	50906786	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778843530		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	64	1003	2	ENST00000440232.2:c.1174G>A	p.Val392Met	p.V392M	ENST00000440232	NM_002691.3	392	Gtg/Atg																																																																															
ALK	238	MSKCC	GRCh37	2	29462683	29462683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	201	862	0	ENST00000389048.3:c.2218G>A	p.Gly740Arg	p.G740R	ENST00000389048	NM_004304.4	740	Gga/Aga																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702265	47702265	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	228	929	1	ENST00000233146.2:c.1861C>T	p.Arg621Ter	p.R621*	ENST00000233146	NM_000251.2	621	Cga/Tga																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030692	48030692	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	64	702	5	ENST00000234420.5:c.3312delT	p.Phe1104LeufsTer11	p.F1104Lfs*11	ENST00000234420	NM_000179.2	1102	acT/ac																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182192	99182192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	201	805	0	ENST00000074304.5:c.2257G>A	p.Ala753Thr	p.A753T	ENST00000074304	NM_001134224.1	753	Gcc/Acc																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128017009	128017009	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151216904		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	232	844	1	ENST00000285398.2:c.2080G>A	p.Ala694Thr	p.A694T	ENST00000285398	NM_000122.1	694	Gct/Act																																																																															
CASP8	841	MSKCC	GRCh37	2	202141631	202141631	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	86	705	0	ENST00000358485.4:c.919del	p.Arg307GlyfsTer23	p.R307Gfs*23	ENST00000358485	NM_001080125.1	307	Cgg/gg																																																																															
ERG	2078	MSKCC	GRCh37	21	39764347	39764347	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	209	802	1	ENST00000288319.7:c.765del	p.Arg256GlyfsTer35	p.R256Gfs*35	ENST00000288319	NM_182918.3	255	ccC/cc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165615	47165615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	149	755	2	ENST00000409792.3:c.511G>T	p.Ala171Ser	p.A171S	ENST00000409792	NM_014159.6	171	Gca/Tca																																																																															
MST1	4485	MSKCC	GRCh37	3	49722906	49722906	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	60	215	0	ENST00000449682.2:c.1421del	p.Pro474GlnfsTer52	p.P474Qfs*52	ENST00000449682	NM_020998.3	474	cCa/ca																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934243	49934243	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1407832113		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	230	933	9	ENST00000296474.3:c.2264del	p.Gly755ValfsTer19	p.G755Vfs*19	ENST00000296474	NM_002447.2	755	gGt/gt																																																																															
BAP1	8314	MSKCC	GRCh37	3	52443613	52443613	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	358	738	0	ENST00000460680.1:c.79delG	p.Val27CysfsTer45	p.V27Cfs*45	ENST00000460680	NM_004656.3	27	Gtg/tg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920337	134920337	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141607080		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	129	638	1	ENST00000398015.3:c.2152G>A	p.Val718Met	p.V718M	ENST00000398015	NM_004441.4	718	Gtg/Atg																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430201	181430202	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	59	396	0	ENST00000325404.1:c.59dup	p.Gly21ArgfsTer75	p.G21Rfs*75	ENST00000325404	NM_003106.3	18	tcg/tcGg																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155411	185155411	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140970208		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	82	533	0	ENST00000265026.3:c.652G>A	p.Ala218Thr	p.A218T	ENST00000265026	NM_004721.4	218	Gca/Aca																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185198259	185198259	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200441685		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	418	778	2	ENST00000265026.3:c.2741G>A	p.Arg914His	p.R914H	ENST00000265026	NM_004721.4	914	cGc/cAc																																																																															
KDR	3791	MSKCC	GRCh37	4	55968156	55968156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	180	786	2	ENST00000263923.4:c.2174G>A	p.Arg725His	p.R725H	ENST00000263923	NM_002253.2	725	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	163	881	4	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542693	187542694	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	76	761	1	ENST00000441802.2:c.5046dup	p.Gly1683TrpfsTer11	p.G1683Wfs*11	ENST00000441802	NM_005245.3	1682	-/T																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31493373	31493373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	18	730	1	ENST00000344624.3:c.1783G>A	p.Asp595Asn	p.D595N	ENST00000344624		595	Gat/Aat																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526679	31526679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	197	994	2	ENST00000344624.3:c.361C>T	p.Pro121Ser	p.P121S	ENST00000344624		121	Cca/Tca																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	66	564	4	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	131	1020	11	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112179389	112179389	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	114	700	0	ENST00000257430.4:c.8098A>G	p.Asn2700Asp	p.N2700D	ENST00000257430	NM_000038.5	2700	Aat/Gat																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120318	94120318	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41273629		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	109	433	0	ENST00000369303.4:c.733G>A	p.Ala245Thr	p.A245T	ENST00000369303	NM_004440.3	245	Gcc/Acc																																																																															
FYN	2534	MSKCC	GRCh37	6	112017495	112017495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	174	531	1	ENST00000368678.4:c.1018G>A	p.Glu340Lys	p.E340K	ENST00000368678		340	Gag/Aag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157502151	157502151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	200	577	5	ENST00000346085.5:c.3184G>A	p.Glu1062Lys	p.E1062K	ENST00000346085	NM_020732.3	1062	Gag/Aag																																																																															
SMO	6608	MSKCC	GRCh37	7	128829282	128829282	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	252	849	0	ENST00000249373.3:c.290A>G	p.Asp97Gly	p.D97G	ENST00000249373	NM_005631.4	97	gAc/gGc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148515136	148515136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	158	661	1	ENST00000320356.2:c.1073G>A	p.Arg358His	p.R358H	ENST00000320356	NM_004456.4	358	cGc/cAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874147	151874148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	179	1009	15	ENST00000262189.6:c.8390dup	p.Glu2798GlyfsTer11	p.E2798Gfs*11	ENST00000262189	NM_170606.2	2797	aag/aaAg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141561429	141561430	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	486	656	2	ENST00000220592.5:c.1375dup	p.Gln459ProfsTer215	p.Q459Pfs*215	ENST00000220592	NM_012154.3	459	cag/cCag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340407	8340407	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201651279		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	142	819	1	ENST00000356435.5:c.5189G>A	p.Arg1730Gln	p.R1730Q	ENST00000356435		1730	cGg/cAg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	44	695	2	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250478	110250478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	126	672	3	ENST00000374672.4:c.197C>T	p.Ala66Val	p.A66V	ENST00000374672	NM_004235.4	66	gCg/gTg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137309117	137309117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	295	1068	2	ENST00000481739.1:c.724G>A	p.Val242Met	p.V242M	ENST00000481739	NM_002957.4	242	Gtg/Atg																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15838386	15838386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	132	363	2	ENST00000307771.7:c.884G>A	p.Arg295Gln	p.R295Q	ENST00000307771	NM_005089.3	295	cGa/cAa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949141	44949143	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	89	416	0	ENST00000377967.4:c.3707_3709del	p.Asn1236del	p.N1236del	ENST00000377967	NM_021140.2	1234	tgCAAc/tgc																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652397	48652397	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	190	478	0	ENST00000376670.3:c.1073del	p.Pro358GlnfsTer74	p.P358Qfs*74	ENST00000376670	NM_002049.3	356	ggC/gg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411530	63411530	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	151	513	0	ENST00000330258.3:c.1637del	p.Leu546CysfsTer16	p.L546Cfs*16	ENST00000330258	NM_152424.3	546	tTg/tg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279861	46279866	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	50	582	0	ENST00000371998.3:c.3810_3815delACAGCA	p.Gln1275_Gln1276del	p.Q1275_Q1276del	ENST00000371998		1263	CAGCAA/-																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	68	532	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	168	508	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	95	574	2	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	58	386	0	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	100	751	0	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518437	204518437	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201947927		P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	109	581	0	ENST00000367182.3:c.1100C>T	p.Ser367Leu	p.S367L	ENST00000367182	NM_001278516.1	367	tCg/tTg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	204	652	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111921764	111921764	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	115	732	0	ENST00000393256.3:c.553C>T	p.Arg185Ter	p.R185*	ENST00000393256	NM_006538.4	185	Cga/Tga																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057937	27057937	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	155	1065	1	ENST00000324856.7:c.1650delC	p.Tyr551ThrfsTer68	p.Y551Tfs*68	ENST00000324856	NM_006015.4	549	Ccc/cc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257366	19257366	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	143	1006	2	ENST00000162023.5:c.767delC	p.Pro256GlnfsTer?	p.P256Qfs*?	ENST00000162023		256	cCa/ca																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806180	1806181	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775260779		P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	175	1153	4	ENST00000260795.2:c.1206dup	p.Lys403GlnfsTer93	p.K403Qfs*93	ENST00000260795		400	agc/agCc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288323	33288323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	174	687	1	ENST00000374542.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000374542	NM_001141970.1	362	cGg/cAg																																																																															
TERT	7015	MSKCC	GRCh37	5	1294283	1294283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	122	1062	3	ENST00000310581.5:c.718C>T	p.Arg240Cys	p.R240C	ENST00000310581	NM_198253.2	240	Cgt/Tgt																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780235	9780235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	193	1084	3	ENST00000377346.4:c.1405G>A	p.Ala469Thr	p.A469T	ENST00000377346	NM_005026.3	469	Gct/Act																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221081	5221081	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199805837		P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	156	868	3	ENST00000357368.4:c.3385G>A	p.Ala1129Thr	p.A1129T	ENST00000357368	NM_002850.3	1129	Gcc/Acc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	89	715	1	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																															
ERG	2078	MSKCC	GRCh37	21	39755553	39755554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	63	667	0	ENST00000288319.7:c.1211dupC	p.Glu405GlyfsTer61	p.E405Gfs*61	ENST00000288319	NM_182918.3	404	ccg/ccCg																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324917	31324917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	208	931	0	ENST00000412585.2:c.19delC	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000412585	NM_005514.6	7	Cga/ga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438018	49438018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	167	1076	2	ENST00000301067.7:c.5153C>T	p.Ala1718Val	p.A1718V	ENST00000301067	NM_003482.3	1718	gCg/gTg																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983029	201983029	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	219	1253	0	ENST00000359651.3:c.878T>G	p.Met293Arg	p.M293R	ENST00000359651		293	aTg/aGg																																																																															
PARP1	142	MSKCC	GRCh37	1	226552719	226552719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	91	549	0	ENST00000366794.5:c.2642C>T	p.Pro881Leu	p.P881L	ENST00000366794	NM_001618.3	881	cCg/cTg																																																																															
RB1	5925	MSKCC	GRCh37	13	49033923	49033923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	117	787	0	ENST00000267163.4:c.2060C>T	p.Thr687Ile	p.T687I	ENST00000267163	NM_000321.2	687	aCc/aTc																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281606	49281606	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	174	1115	1	ENST00000282018.3:c.653G>T	p.Ser218Ile	p.S218I	ENST00000282018	NM_020377.2	218	aGc/aTc																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628580	90628580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	143	1145	5	ENST00000330062.3:c.1007G>A	p.Cys336Tyr	p.C336Y	ENST00000330062	NM_002168.2	336	tGc/tAc																																																																															
CYLD	1540	MSKCC	GRCh37	16	50826571	50826572	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	120	627	0	ENST00000398568.2:c.2301dup	p.Pro768SerfsTer12	p.P768Sfs*12	ENST00000398568	NM_001042412.1	766	att/aTtt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346277	89346277	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	86	494	0	ENST00000301030.4:c.6673A>G	p.Thr2225Ala	p.T2225A	ENST00000301030	NM_001256183.1	2225	Acg/Gcg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15975514	15975514	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	144	887	0	ENST00000268712.3:c.3840del	p.Ser1281ValfsTer16	p.S1281Vfs*16	ENST00000268712	NM_006311.3	1280	ggG/gg																																																																															
BCL2	596	MSKCC	GRCh37	18	60795902	60795902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	147	891	1	ENST00000333681.4:c.676G>A	p.Val226Met	p.V226M	ENST00000333681		226	Gtg/Atg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211003	36211003	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	200	1390	0	ENST00000222270.7:c.758del	p.Pro253HisfsTer7	p.P253Hfs*7	ENST00000222270	NM_014727.1	252	Ccc/cc																																																																															
CIC	23152	MSKCC	GRCh37	19	42799146	42799146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	180	1147	5	ENST00000575354.2:c.4630G>A	p.Ala1544Thr	p.A1544T	ENST00000575354	NM_015125.3	1544	Gct/Act																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919562	96919562	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	126	821	1	ENST00000258439.3:c.701del	p.Pro234LeufsTer73	p.P234Lfs*73	ENST00000258439	NM_001193304.2	234	cCt/ct																																																																															
PMS1	5378	MSKCC	GRCh37	2	190738270	190738270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	79	613	0	ENST00000441310.2:c.2522G>A	p.Cys841Tyr	p.C841Y	ENST00000441310	NM_000534.4	841	tGt/tAt																																																																															
CASP8	841	MSKCC	GRCh37	2	202131239	202131240	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	111	754	0	ENST00000358485.4:c.211dup	p.Glu71GlyfsTer6	p.E71Gfs*6	ENST00000358485	NM_001080125.1	69	-/G																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026133	71026133	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs775136381		P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	122	765	0	ENST00000318789.4:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000318789	NM_032682.5	497	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112174973	112174973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	46	394	0	ENST00000257430.4:c.3682C>T	p.Gln1228Ter	p.Q1228*	ENST00000257430	NM_000038.5	1228	Cag/Tag																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38282076	38282076	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	182	1245	0	ENST00000425967.3:c.980A>G	p.Asn327Ser	p.N327S	ENST00000425967	NM_001174067.1	327	aAt/aGt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87482251	87482251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	135	1004	0	ENST00000277120.3:c.1538G>A	p.Gly513Asp	p.G513D	ENST00000277120		513	gGc/gAc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250280	110250282	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	143	1092	0	ENST00000374672.4:c.393_395del	p.Ser135del	p.S135del	ENST00000374672	NM_004235.4	131	tcCTCt/tct																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411798	63411799	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	110	620	0	ENST00000330258.3:c.1368_1369del	p.Gln457GlufsTer2	p.Q457Efs*2	ENST00000330258	NM_152424.3	456	ccTCag/ccag																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45795049	45795049	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs182537898		P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			837	72	740	0	ENST00000372115.3:c.1537C>T	p.Gln513Ter	p.Q513*	ENST00000372115	NM_001048171.1	513	Caa/Taa																																																																															
MCL1	4170	MSKCC	GRCh37	1	150550799	150550799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			564	287	603	0	ENST00000369026.2:c.857G>A	p.Cys286Tyr	p.C286Y	ENST00000369026	NM_021960.4	286	tGc/tAc																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226253389	226253389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			261	137	244	0	ENST00000366813.1:c.161G>A	p.Arg54His	p.R54H	ENST00000366813		54	cGt/cAt																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226253418	226253418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			117	15	98	0	ENST00000366813.1:c.190C>T	p.Arg64Cys	p.R64C	ENST00000366813		64	Cgc/Tgc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			557	296	866	6	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																															
PGR	5241	MSKCC	GRCh37	11	100998499	100998499	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			457	210	752	0	ENST00000325455.5:c.1303G>C	p.Gly435Arg	p.G435R	ENST00000325455	NM_001202474.3	435	Ggg/Cgg																																																																															
ATM	472	MSKCC	GRCh37	11	108129749	108129749	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			597	230	701	0	ENST00000278616.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000278616	NM_000051.3	805	Cga/Tga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			452	216	605	6	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022502	12022502	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1232497641		P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			654	188	739	1	ENST00000396373.4:c.613del	p.Leu205TrpfsTer4	p.L205Wfs*4	ENST00000396373	NM_001987.4	203	tCc/tc																																																																															
RECQL	5965	MSKCC	GRCh37	12	21628627	21628627	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			461	220	769	0	ENST00000421138.2:c.1081T>C	p.Ser361Pro	p.S361P	ENST00000421138		361	Tca/Cca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420271	49420271	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			649	272	752	0	ENST00000301067.7:c.15478del	p.Asp5160ThrfsTer3	p.D5160Tfs*3	ENST00000301067	NM_003482.3	5160	Gac/ac																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49439880	49439881	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			621	287	842	0	ENST00000301067.7:c.4660_4661del	p.Val1554LeufsTer48	p.V1554Lfs*48	ENST00000301067	NM_003482.3	1554	GTc/c																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434356	121434356	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			648	166	764	1	ENST00000257555.6:c.1124del	p.Gly375AlafsTer9	p.G375Afs*9	ENST00000257555		374	Ggg/gg																																																																															
SETD8	387893	MSKCC	GRCh37	12	123874028	123874028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			73	53	77	1	ENST00000330479.4:c.59C>T	p.Ala20Val	p.A20V	ENST00000330479	NM_020382.3	20	gCg/gTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964077	28964077	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			694	53	586	0	ENST00000282397.4:c.1825del	p.Met609TrpfsTer16	p.M609Wfs*16	ENST00000282397	NM_002019.4	609	Atg/tg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134253	41134253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			533	36	502	0	ENST00000379561.5:c.1375C>T	p.Pro459Ser	p.P459S	ENST00000379561	NM_002015.3	459	Cct/Tct																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515285	103515285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	204	433	0	ENST00000355739.4:c.1786G>A	p.Ala596Thr	p.A596T	ENST00000355739	NM_000123.3	596	Gca/Aca																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518071	103518071	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	117	375	0	ENST00000355739.4:c.2009T>C	p.Phe670Ser	p.F670S	ENST00000355739	NM_000123.3	670	tTc/tCc																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872901	35872901	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			408	211	606	0	ENST00000216797.5:c.331C>T	p.Gln111Ter	p.Q111*	ENST00000216797	NM_020529.2	111	Cag/Tag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43707969	43707969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			805	296	971	1	ENST00000382044.4:c.4912G>A	p.Val1638Ile	p.V1638I	ENST00000382044	NM_001141980.1	1638	Gtc/Atc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820594	3820594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			911	51	847	0	ENST00000262367.5:c.2857C>T	p.His953Tyr	p.H953Y	ENST00000262367	NM_004380.2	953	Cac/Tac																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646980	23646981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1060502767		P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			932	115	882	0	ENST00000261584.4:c.886dup	p.Met296AsnfsTer7	p.M296Nfs*7	ENST00000261584	NM_024675.3	296	atg/aAtg																																																																															
CBFB	865	MSKCC	GRCh37	16	67100669	67100669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			621	289	766	0	ENST00000412916.2:c.367G>A	p.Gly123Ser	p.G123S	ENST00000412916		123	Ggc/Agc																																																																															
CBFB	865	MSKCC	GRCh37	16	67116168	67116168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			537	282	638	0	ENST00000412916.2:c.452G>A	p.Arg151His	p.R151H	ENST00000412916		151	cGc/cAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822174	72822174	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			544	261	757	1	ENST00000268489.5:c.10001C>A	p.Pro3334His	p.P3334H	ENST00000268489	NM_006885.3	3334	cCt/cAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822351	72822351	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62639993		P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			647	375	1052	0	ENST00000268489.5:c.9824C>T	p.Pro3275Leu	p.P3275L	ENST00000268489	NM_006885.3	3275	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			617	304	862	0	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7982805	7982805	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			733	213	983	2	ENST00000319144.4:c.980T>C	p.Val327Ala	p.V327A	ENST00000319144	NM_001139.2	327	gTg/gCg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			277	104	350	2	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			762	339	863	2	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			287	485	768	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78727975	78727975	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148973724		P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			287	185	482	0	ENST00000306801.3:c.820G>A	p.Ala274Thr	p.A274T	ENST00000306801	NM_020761.2	274	Gcc/Acc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39617671	39617671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			377	100	494	0	ENST00000262039.4:c.1855G>A	p.Ala619Thr	p.A619T	ENST00000262039	NM_002647.2	619	Gca/Aca																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210741	2210741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			491	260	668	2	ENST00000398665.3:c.1238G>A	p.Arg413His	p.R413H	ENST00000398665	NM_032482.2	413	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5210754	5210754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			692	350	979	0	ENST00000357368.4:c.5297G>A	p.Arg1766His	p.R1766H	ENST00000357368	NM_002850.3	1766	cGc/cAc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			574	236	929	2	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11123700	11123700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			588	281	845	2	ENST00000344626.4:c.2350G>A	p.Gly784Arg	p.G784R	ENST00000344626	NM_003072.3	784	Ggg/Agg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281251	15281251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			662	331	984	0	ENST00000263388.2:c.5005C>T	p.Arg1669Cys	p.R1669C	ENST00000263388	NM_000435.2	1669	Cgc/Tgc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290908	15290908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			691	327	1052	1	ENST00000263388.2:c.3302G>A	p.Gly1101Asp	p.G1101D	ENST00000263388	NM_000435.2	1101	gGc/gAc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273883	18273883	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149367522		P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			729	245	835	0	ENST00000222254.8:c.1216C>T	p.Arg406Cys	p.R406C	ENST00000222254	NM_005027.3	406	Cgc/Tgc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18976946	18976946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			457	228	675	1	ENST00000262803.5:c.3331G>A	p.Gly1111Arg	p.G1111R	ENST00000262803	NM_002911.3	1111	Ggg/Agg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			937	158	973	8	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223190	36223190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			940	242	1130	1	ENST00000222270.7:c.5740C>T	p.Arg1914Cys	p.R1914C	ENST00000222270	NM_014727.1	1914	Cgt/Tgt																																																																															
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			331	67	475	4	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																															
ALK	238	MSKCC	GRCh37	2	29449824	29449824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	82	1107	2	ENST00000389048.3:c.3031G>A	p.Gly1011Arg	p.G1011R	ENST00000389048	NM_004304.4	1011	Ggg/Agg																																																																															
ALK	238	MSKCC	GRCh37	2	29451783	29451784	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			656	142	858	2	ENST00000389048.3:c.2781dup	p.Cys928ValfsTer20	p.C928Vfs*20	ENST00000389048	NM_004304.4	927	-/G																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213168	39213170	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			955	83	984	0	ENST00000402219.2:c.3797_3799del	p.Pro1266del	p.P1266del	ENST00000402219	NM_005633.3	1266	cCTCac/cac																																																																															
CASP8	841	MSKCC	GRCh37	2	202151254	202151254	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			749	55	640	0	ENST00000358485.4:c.1557delG	p.Lys520AsnfsTer10	p.K520Nfs*10	ENST00000358485	NM_001080125.1	518	atG/at																																																																															
CUL3	8452	MSKCC	GRCh37	2	225342934	225342934	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			574	265	637	0	ENST00000264414.4:c.2158A>G	p.Asn720Asp	p.N720D	ENST00000264414	NM_003590.4	720	Aat/Gat																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	151	575	11	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29092936	29092936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			582	306	715	1	ENST00000328354.6:c.1048C>T	p.Pro350Ser	p.P350S	ENST00000328354	NM_007194.3	350	Cca/Tca																																																																															
MST1R	4486	MSKCC	GRCh37	3	49928945	49928945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			653	288	1030	1	ENST00000296474.3:c.3421C>T	p.Pro1141Ser	p.P1141S	ENST00000296474	NM_002447.2	1141	Ccg/Tcg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138409867	138409867	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			567	172	650	1	ENST00000289153.2:c.2011G>T	p.Gly671Trp	p.G671W	ENST00000289153	NM_006219.2	671	Ggg/Tgg																																																																															
TP63	8626	MSKCC	GRCh37	3	189349366	189349366	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	169	368	0	ENST00000264731.3:c.62G>A	p.Arg21His	p.R21H	ENST00000264731	NM_003722.4	21	cGt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			520	204	664	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31521250	31521250	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			699	318	832	0	ENST00000344624.3:c.927delA	p.Glu310SerfsTer42	p.E310Sfs*42	ENST00000344624		309	aaA/aa																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38945141	38945141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			298	111	371	0	ENST00000357387.3:c.4663T>C	p.Cys1555Arg	p.C1555R	ENST00000357387	NM_152756.3	1555	Tgt/Cgt																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38957755	38957755	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			468	211	543	0	ENST00000357387.3:c.2498G>A	p.Arg833Lys	p.R833K	ENST00000357387	NM_152756.3	833	aGg/aAg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589576	67589576	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1289537429		P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			322	142	362	0	ENST00000274335.5:c.1344del	p.Lys448AsnfsTer32	p.K448Nfs*32	ENST00000274335		447	Aaa/aa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			748	335	876	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149510113	149510113	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			633	274	765	0	ENST00000261799.4:c.1356A>C	p.Arg452Ser	p.R452S	ENST00000261799	NM_002609.3	452	agA/agC																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192645	138192645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			601	32	465	0	ENST00000237289.4:c.281C>T	p.Ala94Val	p.A94V	ENST00000237289	NM_001270507.1	94	gCg/gTg																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199889	138199889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	168	479	0	ENST00000237289.4:c.1307G>A	p.Gly436Glu	p.G436E	ENST00000237289	NM_001270507.1	436	gGg/gAg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			618	272	774	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55220281	55220281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			650	353	899	1	ENST00000275493.2:c.671G>A	p.Arg224His	p.R224H	ENST00000275493	NM_005228.3	224	cGt/cAt																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38196074	38196074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			800	384	990	0	ENST00000317025.8:c.727G>A	p.Val243Ile	p.V243I	ENST00000317025	NM_023034.1	243	Gta/Ata																																																																															
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			646	312	686	1	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																															
AR	367	MSKCC	GRCh37	X	66765149	66765151	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-	rs764402637		P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			114	10	165	0	ENST00000374690.3:c.170_172del	p.Leu57del	p.L57del	ENST00000374690	NM_000044.3	54	tTGCtg/ttg																																																																															
AR	367	MSKCC	GRCh37	X	66765158	66765158	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs78686797		P-0021519-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			61	32	134	2	ENST00000374690.3:c.170T>A	p.Leu57Gln	p.L57Q	ENST00000374690	NM_000044.3	57	cTg/cAg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9770533	9770534	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	176	741	0	ENST00000377346.4:c.24dup	p.Met9HisfsTer15	p.M9Hfs*15	ENST00000377346	NM_005026.3	7	tgc/tgCc																																																																															
JUN	3725	MSKCC	GRCh37	1	59247851	59247851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	241	905	2	ENST00000371222.2:c.892G>A	p.Ala298Thr	p.A298T	ENST00000371222	NM_002228.3	298	Gcc/Acc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100407	8100407	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	153	776	0	ENST00000346208.3:c.384del	p.Leu130SerfsTer65	p.L130Sfs*65	ENST00000346208		127	ccG/cc																																																																															
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	62	315	1	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88649974	88649974	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	166	779	0	ENST00000372037.3:c.223A>G	p.Thr75Ala	p.T75A	ENST00000372037	NM_004329.2	75	Aca/Gca																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136996	64136996	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	198	699	0	ENST00000334205.4:c.1507G>C	p.Glu503Gln	p.E503Q	ENST00000334205	NM_003942.2	503	Gag/Cag																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589830	69589830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	44	91	0	ENST00000168712.1:c.23C>T	p.Ala8Val	p.A8V	ENST00000168712	NM_002007.2	8	gCg/gTg																																																																															
ATM	472	MSKCC	GRCh37	11	108139269	108139269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	200	794	5	ENST00000278616.4:c.2771G>A	p.Arg924Gln	p.R924Q	ENST00000278616	NM_000051.3	924	cGg/cAg																																																																															
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	76	360	1	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	146	756	9	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426046	49426046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	157	720	0	ENST00000301067.7:c.12442A>G	p.Met4148Val	p.M4148V	ENST00000301067	NM_003482.3	4148	Atg/Gtg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	163	717	12	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																															
POLE	5426	MSKCC	GRCh37	12	133250163	133250163	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	134	609	0	ENST00000320574.5:c.1357del	p.Gln453ArgfsTer19	p.Q453Rfs*19	ENST00000320574	NM_006231.2	453	Cag/ag																																																																															
CDK8	1024	MSKCC	GRCh37	13	26923249	26923249	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	108	488	0	ENST00000381527.3:c.248del	p.Lys83ArgfsTer25	p.K83Rfs*25	ENST00000381527	NM_001260.1	82	cAa/ca																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30105560	30105560	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	196	870	1	ENST00000331968.5:c.1126C>T	p.Gln376Ter	p.Q376*	ENST00000331968	NM_002742.2	376	Cag/Tag																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986991	36986991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	101	538	1	ENST00000354822.5:c.698C>T	p.Thr233Met	p.T233M	ENST00000354822	NM_001079668.2	233	aCg/aTg																																																																															
AKT1	207	MSKCC	GRCh37	14	105239313	105239313	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	172	797	0	ENST00000349310.3:c.1074del	p.Phe358LeufsTer89	p.F358Lfs*89	ENST00000349310	NM_001014432.1	358	ttT/tt																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304140	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	160	622	0	ENST00000355112.3:c.1543_1544del	p.Asn515Ter	p.N515*	ENST00000355112	NM_000057.2	512	ggAAaa/ggaa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99192888	99192888	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	107	515	0	ENST00000268035.6:c.78G>A	p.Trp26Ter	p.W26*	ENST00000268035	NM_000875.3	26	tgG/tgA																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	235	878	3	ENST00000294008.3:c.1406delC	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3828111	3828111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	186	742	0	ENST00000262367.5:c.2014C>T	p.Arg672Cys	p.R672C	ENST00000262367	NM_004380.2	672	Cgt/Tgt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943635	9943635	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	129	749	0	ENST00000330684.3:c.1306T>C	p.Cys436Arg	p.C436R	ENST00000330684	NM_001134407.1	436	Tgt/Cgt																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348863	11348863	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	49	207	0	ENST00000332029.2:c.473C>G	p.Pro158Arg	p.P158R	ENST00000332029	NM_003745.1	158	cCg/cGg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647027	23647028	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	195	786	0	ENST00000261584.4:c.839dup	p.Asn280LysfsTer3	p.N280Kfs*3	ENST00000261584	NM_024675.3	280	aac/aaAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68835780	68835781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	120	634	0	ENST00000261769.5:c.377dup	p.Pro127AlafsTer41	p.P127Afs*41	ENST00000261769	NM_004360.3	124	cgc/cgCc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81962229	81962229	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	43	613	0	ENST00000359376.3:c.2581G>A	p.Val861Met	p.V861M	ENST00000359376	NM_002661.3	861	Gtg/Atg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346424	89346424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	152	711	2	ENST00000301030.4:c.6526G>A	p.Gly2176Ser	p.G2176S	ENST00000301030	NM_001256183.1	2176	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	185	678	1	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782596		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	167	651	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032577	12032577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	117	649	0	ENST00000353533.5:c.1013C>T	p.Pro338Leu	p.P338L	ENST00000353533	NM_003010.3	338	cCg/cTg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	104	664	0	ENST00000407977.2:c.1975_1976dup	p.Pro660ValfsTer41	p.P660Vfs*41	ENST00000407977		659	ggt/ggGGt																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435815	56435815	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	87	524	0	ENST00000407977.2:c.1322delC	p.Pro441LeufsTer61	p.P441Lfs*61	ENST00000407977		441	cCt/ct																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439936	56439936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	209	564	3	ENST00000407977.2:c.656G>A	p.Arg219His	p.R219H	ENST00000407977		219	cGc/cAc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59821817	59821817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	188	706	1	ENST00000259008.2:c.2233G>A	p.Ala745Thr	p.A745T	ENST00000259008	NM_032043.2	745	Gca/Aca																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119084	70120018	+	splice_acceptor_variant,splice_donor_variant,frameshift_variant,stop_lost,intron_variant	Splice_Site	DEL	GCGAGGTGCACTCCCCCGGCGAGCACTCGGGTGAGTCGCCCCTCGACCCCACCGGACAAGCTATCTCCGTCCCGCCTGGCACACCCCCTGCCCTCCGCCTGGGAGATTCTTCGTGGGGACTTTATGCTTCCCGGGAGGGACACACTGCCCTTTGCGCCCGTCCCGCTCCCCTCTCTACCCAGAGCCTAAGAGGCATCCAAACAACACACACACAAACACACACACCCCAACTCAATCCCAGCATCCGAAGAGATTAACTTTTTTATTGGGAGGTAAAATGCCCTTAACAGCCTTACAAGACCTCTCCCTTCTTCTCTGCTCCCCCACCCCAAAAGCACACACAGGGCTCTTACACAAGTAGCAATTAGGTCTTCCGGACCCTCCGGGCCCCAGACCCTCCCCTGATAAAAGGGGGCTGTCCAGTGTGTACCGGCGGGTTAATCATTGGGCGACTTATCTCCGGTGCAGCGCGCCTCTTGCGCGGGTGCGGGCCCTTATTACACTTTAGCAGCGAGGGAGGGTCCCCGGAGGGTGCCTAAGACTAGGGCGTCTGCACAGCCCTTGTTGATTTTCTCGTGCTTGTTCTTTTATTGTCCACAGGGCAATCCCAGGGCCCACCGACCCCACCCACCACCCCCAAAACCGACGTGCAGCCGGGCAAGGCTGACCTGAAGCGAGAGGGGCGCCCCTTGCCAGAGGGGGGCAGACAGCCCCCTATCGACTTCCGCGACGTGGACATCGGCGAGCTGAGCAGCGACGTCATCTCCAACATCGAGACCTTCGATGTCAACGAGTTTGACCAGTACCTGCCGCCCAACGGCCACCCGGGGGTGCCGGCCACGCACGGCCAGGTCACCTACACGGGCAGCTACGGCATCAGCAGCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	GCGAGGTGCACTCCCCCGGCGAGCACTCGGGTGAGTCGCCCCTCGACCCCACCGGACAAGCTATCTCCGTCCCGCCTGGCACACCCCCTGCCCTCCGCCTGGGAGATTCTTCGTGGGGACTTTATGCTTCCCGGGAGGGACACACTGCCCTTTGCGCCCGTCCCGCTCCCCTCTCTACCCAGAGCCTAAGAGGCATCCAAACAACACACACACAAACACACACACCCCAACTCAATCCCAGCATCCGAAGAGATTAACTTTTTTATTGGGAGGTAAAATGCCCTTAACAGCCTTACAAGACCTCTCCCTTCTTCTCTGCTCCCCCACCCCAAAAGCACACACAGGGCTCTTACACAAGTAGCAATTAGGTCTTCCGGACCCTCCGGGCCCCAGACCCTCCCCTGATAAAAGGGGGCTGTCCAGTGTGTACCGGCGGGTTAATCATTGGGCGACTTATCTCCGGTGCAGCGCGCCTCTTGCGCGGGTGCGGGCCCTTATTACACTTTAGCAGCGAGGGAGGGTCCCCGGAGGGTGCCTAAGACTAGGGCGTCTGCACAGCCCTTGTTGATTTTCTCGTGCTTGTTCTTTTATTGTCCACAGGGCAATCCCAGGGCCCACCGACCCCACCCACCACCCCCAAAACCGACGTGCAGCCGGGCAAGGCTGACCTGAAGCGAGAGGGGCGCCCCTTGCCAGAGGGGGGCAGACAGCCCCCTATCGACTTCCGCGACGTGGACATCGGCGAGCTGAGCAGCGACGTCATCTCCAACATCGAGACCTTCGATGTCAACGAGTTTGACCAGTACCTGCCGCCCAACGGCCACCCGGGGGTGCCGGCCACGCACGGCCAGGTCACCTACACGGGCAGCTACGGCATCAGCAGCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	59	439	0	ENST00000245479.2:c.659_1023del		p.X220_splice	ENST00000245479	NM_000346.3	220	aGCGAGGTGCACTCCCCCGGCGAGCACTCGGGTGAGTCGCCCCTCGACCCCACCGGACAAGCTATCTCCGTCCCGCCTGGCACACCCCCTGCCCTCCGCCTGGGAGATTCTTCGTGGGGACTTTATGCTTCCCGGGAGGGACACACTGCCCTTTGCGCCCGTCCCGCTCCCCTCTCTACCCAGAGCCTAAGAGGCATCCAAACAACACACACACAAACACACACACCCCAACTCAATCCCAGCATCCGAAGAGATTAACTTTTTTATTGGGAGGTAAAATGCCCTTAACAGCCTTACAAGACCTCTCCCTTCTTCTCTGCTCCCCCACCCCAAAAGCACACACAGGGCTCTTACACAAGTAGCAATTAGGTCTTCCGGACCCTCCGGGCCCCAGACCCTCCCCTGATAAAAGGGGGCTGTCCAGTGTGTACCGGCGGGTTAATCATTGGGCGACTTATCTCCGGTGCAGCGCGCCTCTTGCGCGGGTGCGGGCCCTTATTACACTTTAGCAGCGAGGGAGGGTCCCCGGAGGGTGCCTAAGACTAGGGCGTCTGCACAGCCCTTGTTGATTTTCTCGTGCTTGTTCTTTTATTGTCCACAGGGCAATCCCAGGGCCCACCGACCCCACCCACCACCCCCAAAACCGACGTGCAGCCGGGCAAGGCTGACCTGAAGCGAGAGGGGCGCCCCTTGCCAGAGGGGGGCAGACAGCCCCCTATCGACTTCCGCGACGTGGACATCGGCGAGCTGAGCAGCGACGTCATCTCCAACATCGAGACCTTCGATGTCAACGAGTTTGACCAGTACCTGCCGCCCAACGGCCACCCGGGGGTGCCGGCCACGCACGGCCAGGTCACCTACACGGGCAGCTACGGCATCAGCAGCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG/a																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274347	5274348	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	58	525	0	ENST00000357368.4:c.99dup	p.Arg34GlnfsTer26	p.R34Qfs*26	ENST00000357368	NM_002850.3	33	-/C																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11130337	11130337	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs281875226		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	142	707	1	ENST00000358026.2:c.2576C>T	p.Thr859Met	p.T859M	ENST00000358026	NM_001128849.1	859	aCg/aTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288789	15288789	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	64	219	0	ENST00000263388.2:c.3950del	p.Pro1317GlnfsTer103	p.P1317Qfs*103	ENST00000263388	NM_000435.2	1317	cCa/ca																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349892	15349892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	159	534	2	ENST00000263377.2:c.3760C>T	p.Arg1254Trp	p.R1254W	ENST00000263377	NM_058243.2	1254	Cgg/Tgg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18943041	18943041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	141	559	0	ENST00000262803.5:c.23C>T	p.Pro8Leu	p.P8L	ENST00000262803	NM_002911.3	8	cCc/cTc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967091	18967092	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs1384543747		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	134	755	0	ENST00000262803.5:c.1814_1815del	p.Glu605AlafsTer17	p.E605Afs*17	ENST00000262803	NM_002911.3	602	gcAGag/gcag																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214899	36214899	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	177	738	0	ENST00000222270.7:c.3325C>T	p.Arg1109Ter	p.R1109*	ENST00000222270	NM_014727.1	1109	Cga/Tga																																																																															
CIC	23152	MSKCC	GRCh37	19	42793346	42793346	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	38	709	0	ENST00000575354.2:c.1148C>A	p.Pro383His	p.P383H	ENST00000575354	NM_015125.3	383	cCt/cAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42794819	42794820	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	115	559	0	ENST00000575354.2:c.1904dup	p.Asn636LysfsTer54	p.N636Kfs*54	ENST00000575354	NM_015125.3	633	-/C																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910394	50910394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	210	754	1	ENST00000440232.2:c.1649G>A	p.Gly550Asp	p.G550D	ENST00000440232	NM_002691.3	550	gGc/gAc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46607816	46607816	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	178	815	5	ENST00000263734.3:c.2009del	p.Pro670LeufsTer26	p.P670Lfs*26	ENST00000263734	NM_001430.4	669	Ccc/cc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027807	48027807	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	132	530	0	ENST00000234420.5:c.2690del	p.Asn897IlefsTer9	p.N897Ifs*9	ENST00000234420	NM_000179.2	895	acA/ac																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212587232	212587232	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	108	584	1	ENST00000342788.4:c.769G>T	p.Ala257Ser	p.A257S	ENST00000342788	NM_005235.2	257	Gca/Tca																																																																															
INHA	3623	MSKCC	GRCh37	2	220437223	220437223	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	195	871	1	ENST00000243786.2:c.132del	p.Ala45ArgfsTer2	p.A45Rfs*2	ENST00000243786	NM_002191.3	43	Ccc/cc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	172	825	2	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017747	31017749	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	129	645	7	ENST00000375687.4:c.619_621del	p.Ser207del	p.S207del	ENST00000375687	NM_015338.5	203	tcCAGc/tcc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023045	31023046	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	179	701	0	ENST00000375687.4:c.2535dup	p.Ser846GlnfsTer5	p.S846Qfs*5	ENST00000375687	NM_015338.5	844	acc/aCcc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31395624	31395624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	206	753	0	ENST00000328111.2:c.2477G>A	p.Arg826His	p.R826H	ENST00000328111	NM_006892.3	826	cGc/cAc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46281784	46281784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	192	837	0	ENST00000371998.3:c.4231C>T	p.Pro1411Ser	p.P1411S	ENST00000371998		1411	Ccc/Tcc																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961396	54961396	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	100	331	0	ENST00000312783.6:c.236T>G	p.Leu79Trp	p.L79W	ENST00000312783	NM_198436.1	79	tTg/tGg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	117	594	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62290766	62290766	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	23	261	0	ENST00000508582.2:c.11T>C	p.Ile4Thr	p.I4T	ENST00000508582		4	aTa/aCa																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62292700	62292700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	152	735	0	ENST00000508582.2:c.152G>A	p.Cys51Tyr	p.C51Y	ENST00000508582		51	tGc/tAc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091782	29091782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	154	659	0	ENST00000328354.6:c.1175C>T	p.Ala392Val	p.A392V	ENST00000328354	NM_007194.3	392	gCg/gTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41545897	41545897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	189	860	1	ENST00000263253.7:c.2512C>T	p.Arg838Cys	p.R838C	ENST00000263253	NM_001429.3	838	Cgt/Tgt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713295	30713295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	27	484	0	ENST00000359013.4:c.695G>A	p.Arg232Gln	p.R232Q	ENST00000359013	NM_001024847.2	232	cGg/cAg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52584478	52584478	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142726131		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	184	624	1	ENST00000394830.3:c.4535C>T	p.Ala1512Val	p.A1512V	ENST00000394830	NM_018313.4	1512	gCg/gTg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	117	523	3	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	242	896	9	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156558	55156558	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	175	710	0	ENST00000257290.5:c.2959G>T	p.Ala987Ser	p.A987S	ENST00000257290	NM_006206.4	987	Gca/Tca																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66242741	66242741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	83	431	0	ENST00000273854.3:c.1831G>A	p.Ala611Thr	p.A611T	ENST00000273854	NM_004439.5	611	Gct/Act																																																																															
FAT1	2195	MSKCC	GRCh37	4	187525698	187525698	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	139	481	0	ENST00000441802.2:c.10381C>T	p.Gln3461Ter	p.Q3461*	ENST00000441802	NM_005245.3	3461	Cag/Tag																																																																															
TERT	7015	MSKCC	GRCh37	5	1294408	1294408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	186	656	2	ENST00000310581.5:c.593G>A	p.Gly198Glu	p.G198E	ENST00000310581	NM_198253.2	198	gGa/gAa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876086	35876086	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	113	405	0	ENST00000303115.3:c.878A>G	p.Asn293Ser	p.N293S	ENST00000303115	NM_002185.3	293	aAt/aGt																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	199	769	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149456907	149456907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	214	854	0	ENST00000286301.3:c.821G>A	p.Gly274Asp	p.G274D	ENST00000286301	NM_005211.3	274	gGc/gAc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520545	176520545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	182	732	0	ENST00000292408.4:c.1390C>T	p.Arg464Trp	p.R464W	ENST00000292408	NM_213647.1	464	Cgg/Tgg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524552	176524552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	189	867	0	ENST00000292408.4:c.2284G>A	p.Gly762Arg	p.G762R	ENST00000292408	NM_213647.1	762	Gga/Aga																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402833	20402833	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	16	54	0	ENST00000346618.3:c.370A>G	p.Ser124Gly	p.S124G	ENST00000346618	NM_001949.4	124	Agc/Ggc																																																																															
STK19	8859	MSKCC	GRCh37	6	31947251	31947251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	170	810	0	ENST00000375331.2:c.724G>A	p.Val242Ile	p.V242I	ENST00000375331	NM_004197.1	242	Gta/Ata																																																																															
TAP1	6890	MSKCC	GRCh37	6	32818901	32818902	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	137	655	0	ENST00000354258.4:c.1049_1050del	p.Glu350GlyfsTer7	p.E350Gfs*7	ENST00000354258	NM_000593.5	350	gAG/g																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120753	94120754	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	150	613	0	ENST00000369303.4:c.297dup	p.Val100CysfsTer11	p.V100Cfs*11	ENST00000369303	NM_004440.3	99	-/T																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405954	157405954	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	132	631	3	ENST00000346085.5:c.2201del	p.Gly734AlafsTer11	p.G734Afs*11	ENST00000346085	NM_020732.3	732	ccG/cc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6038876	6038876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	181	632	0	ENST00000265849.7:c.568G>A	p.Ala190Thr	p.A190T	ENST00000265849	NM_000535.5	190	Gca/Aca																																																																															
PMS2	5395	MSKCC	GRCh37	7	6043349	6043349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	58	247	2	ENST00000265849.7:c.325del	p.Glu109LysfsTer3	p.E109Kfs*3	ENST00000265849	NM_000535.5	109	Gaa/aa																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50450279	50450279	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	117	646	0	ENST00000331340.3:c.463A>G	p.Thr155Ala	p.T155A	ENST00000331340	NM_006060.4	155	Acc/Gcc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508235	106508235	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	81	358	1	ENST00000359195.3:c.229C>T	p.Arg77Ter	p.R77*	ENST00000359195	NM_002649.2	77	Cga/Tga																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508557	106508557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	44	284	0	ENST00000359195.3:c.551G>A	p.Arg184His	p.R184H	ENST00000359195	NM_002649.2	184	cGc/cAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	131	577	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	181	818	8	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																															
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	113	542	0	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117862939	117862939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	152	683	0	ENST00000297338.2:c.1538G>A	p.Cys513Tyr	p.C513Y	ENST00000297338	NM_006265.2	513	tGt/tAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971062	21971062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	62	508	2	ENST00000304494.5:c.296G>A	p.Arg99Gln	p.R99Q	ENST00000304494	NM_000077.4	99	cGg/cAg																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs926053251		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	176	654	2	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	111	512	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300039	137300040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755912201		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	153	815	6	ENST00000481739.1:c.331dup	p.Leu111ProfsTer70	p.L111Pfs*70	ENST00000481739	NM_002957.4	108	-/C																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139390697	139390697	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	199	898	2	ENST00000277541.6:c.7494del	p.Ser2499AlafsTer90	p.S2499Afs*90	ENST00000277541	NM_017617.3	2498	ccC/cc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413229	139413229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	204	826	1	ENST00000277541.6:c.913G>A	p.Ala305Thr	p.A305T	ENST00000277541	NM_017617.3	305	Gcc/Acc																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564701	139564701	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	58	963	0	ENST00000308874.7:c.490T>C	p.Trp164Arg	p.W164R	ENST00000308874		164	Tgg/Cgg																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1325355	1325355	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	135	637	0	ENST00000381566.1:c.320del	p.Phe107SerfsTer11	p.F107Sfs*11	ENST00000381566		107	tTc/tc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15821896	15821896	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	128	539	0	ENST00000307771.7:c.294del	p.Lys98AsnfsTer10	p.K98Nfs*10	ENST00000307771	NM_005089.3	97	Aaa/aa																																																																															
AR	367	MSKCC	GRCh37	X	66941772	66941772	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	116	773	0	ENST00000374690.3:c.2416C>A	p.Leu806Met	p.L806M	ENST00000374690	NM_000044.3	806	Ctg/Atg																																																																															
MED12	9968	MSKCC	GRCh37	X	70350054	70350054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	93	496	0	ENST00000374080.3:c.4037G>A	p.Arg1346His	p.R1346H	ENST00000374080		1346	cGc/cAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68857442	68857442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	203	725	0	ENST00000261769.5:c.2077G>A	p.Gly693Ser	p.G693S	ENST00000261769	NM_004360.3	693	Ggc/Agc																																																																															
RET	5979	MSKCC	GRCh37	10	43572750	43572755	+	inframe_deletion	In_Frame_Del	DEL	TGCTGC	TGCTGC	-			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	54	229	0	ENST00000355710.3:c.53_58del	p.Leu18_Leu19del	p.L18_L19del	ENST00000355710	NM_020975.4	15	tTGCTGCtg/ttg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246643	46246643	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	32	219	0	ENST00000334344.6:c.4737G>T	p.Gln1579His	p.Q1579H	ENST00000334344	NM_152641.2	1579	caG/caT																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285628	46285629	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	80	543	0	ENST00000334344.6:c.4989dup	p.Pro1664SerfsTer10	p.P1664Sfs*10	ENST00000334344	NM_152641.2	1663	tat/taTt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	176	798	4	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109746	115109746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	141	861	0	ENST00000257566.3:c.2132G>A	p.Cys711Tyr	p.C711Y	ENST00000257566	NM_016569.3	711	tGc/tAc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434360	121434360	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	152	672	0	ENST00000257555.6:c.1124G>C	p.Gly375Ala	p.G375A	ENST00000257555		375	gGc/gCc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32930730	32930730	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs74047012		P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	157	591	0	ENST00000380152.3:c.7601C>T	p.Ala2534Val	p.A2534V	ENST00000380152		2534	gCg/gTg																																																																															
RB1	5925	MSKCC	GRCh37	13	48954198	48954198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	93	414	0	ENST00000267163.4:c.1399C>T	p.Arg467Ter	p.R467*	ENST00000267163	NM_000321.2	467	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032405	10032405	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	64	274	0	ENST00000330684.3:c.418C>A	p.Pro140Thr	p.P140T	ENST00000330684	NM_001134407.1	140	Ccg/Acg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647028	23647028	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	46	797	0	ENST00000261584.4:c.839del	p.Asn280ThrfsTer8	p.N280Tfs*8	ENST00000261584	NM_024675.3	280	aAc/ac																																																																															
CDH1	999	MSKCC	GRCh37	16	68856093	68856093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	185	665	2	ENST00000261769.5:c.1901C>T	p.Ala634Val	p.A634V	ENST00000261769	NM_004360.3	634	gCg/gTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829497	72829497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	97	666	2	ENST00000268489.5:c.7084G>A	p.Asp2362Asn	p.D2362N	ENST00000268489	NM_006885.3	2362	Gac/Aac																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217705	7217707	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs757139280		P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	125	529	1	ENST00000380728.2:c.220_222del	p.Glu74del	p.E74del	ENST00000380728		74	GAG/-																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118881	70118882	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	151	596	0	ENST00000245479.2:c.454dup	p.Arg152ProfsTer100	p.R152Pfs*100	ENST00000245479	NM_000346.3	151	-/C																																																																															
AKT2	208	MSKCC	GRCh37	19	40739787	40739787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	226	905	2	ENST00000392038.2:c.1438C>T	p.Arg480Cys	p.R480C	ENST00000392038	NM_001626.4	480	Cgc/Tgc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919007	50919007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	213	747	3	ENST00000440232.2:c.2744C>T	p.Ala915Val	p.A915V	ENST00000440232	NM_002691.3	915	gCg/gTg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716301	52716301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	166	641	1	ENST00000322088.6:c.745C>T	p.Arg249Cys	p.R249C	ENST00000322088	NM_014225.5	249	Cgc/Tgc																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96920652	96920652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	149	505	2	ENST00000258439.3:c.328G>A	p.Ala110Thr	p.A110T	ENST00000258439	NM_001193304.2	110	Gct/Act																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99172161	99172161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	119	641	1	ENST00000074304.5:c.1727C>T	p.Pro576Leu	p.P576L	ENST00000074304	NM_001134224.1	576	cCg/cTg																																																																															
BARD1	580	MSKCC	GRCh37	2	215674206	215674206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	92	699	0	ENST00000260947.4:c.88G>A	p.Gly30Ser	p.G30S	ENST00000260947	NM_000465.2	30	Ggt/Agt																																																																															
TOP1	7150	MSKCC	GRCh37	20	39721125	39721125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	118	482	2	ENST00000361337.2:c.628C>T	p.Arg210Cys	p.R210C	ENST00000361337	NM_003286.2	210	Cgc/Tgc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	24	463	2	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
ERG	2078	MSKCC	GRCh37	21	39755786	39755786	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	104	407	0	ENST00000288319.7:c.979T>C	p.Ser327Pro	p.S327P	ENST00000288319	NM_182918.3	327	Tcc/Ccc																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41747889	41747889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	199	666	1	ENST00000226382.2:c.880G>A	p.Val294Ile	p.V294I	ENST00000226382	NM_003924.3	294	Gtc/Atc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521384	187521384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	120	500	0	ENST00000441802.2:c.11771G>A	p.Arg3924His	p.R3924H	ENST00000441802	NM_005245.3	3924	cGc/cAc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629114	187629114	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	84	606	0	ENST00000441802.2:c.1868T>C	p.Val623Ala	p.V623A	ENST00000441802	NM_005245.3	623	gTa/gCa																																																																															
SDHA	6389	MSKCC	GRCh37	5	226016	226016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	40	145	0	ENST00000264932.6:c.475C>T	p.Pro159Ser	p.P159S	ENST00000264932	NM_004168.2	159	Ccg/Tcg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	215	731	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324132	31324132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	85	553	0	ENST00000412585.2:c.431G>A	p.Gly144Asp	p.G144D	ENST00000412585	NM_005514.6	144	gGc/gAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268940	55268940	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	188	806	1	ENST00000275493.2:c.3006G>T	p.Met1002Ile	p.M1002I	ENST00000275493	NM_005228.3	1002	atG/atT																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106513348	106513348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	84	404	1	ENST00000359195.3:c.2252C>T	p.Ser751Leu	p.S751L	ENST00000359195	NM_002649.2	751	tCg/tTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	104	525	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TEK	7010	MSKCC	GRCh37	9	27169575	27169575	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	191	770	1	ENST00000380036.4:c.576G>T	p.Arg192Ser	p.R192S	ENST00000380036	NM_000459.3	192	agG/agT																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771932	135771932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	80	511	0	ENST00000298552.3:c.3185G>A	p.Arg1062Gln	p.R1062Q	ENST00000298552	NM_001162426.1	1062	cGg/cAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76812935	76812935	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	132	659	1	ENST00000373344.5:c.6686C>A	p.Pro2229His	p.P2229H	ENST00000373344	NM_000489.3	2229	cCc/cAc																																																																															
XIAP	331	MSKCC	GRCh37	X	123019795	123019795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	125	585	0	ENST00000355640.3:c.283G>A	p.Gly95Ser	p.G95S	ENST00000355640		95	Ggc/Agc																																																																															
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765123636		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	90	472	0	ENST00000369902.3:c.71dup	p.Ala25GlyfsTer23	p.A25Gfs*23	ENST00000369902	NM_016169.3	22	gcc/gCcc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	119	655	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	113	554	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
CIC	23152	MSKCC	GRCh37	19	42799299	42799300	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	60	448	0	ENST00000575354.2:c.4790dupC	p.Pro1598ThrfsTer16	p.P1598Tfs*16	ENST00000575354	NM_015125.3	1595	tcc/tCcc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	363	717	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																															
INSR	3643	MSKCC	GRCh37	19	7143049	7143049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	131	672	0	ENST00000302850.5:c.2320G>A	p.Val774Met	p.V774M	ENST00000302850	NM_000208.2	774	Gtg/Atg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779211	3779211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783507		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	55	438	6	ENST00000262367.5:c.5837del	p.Pro1946HisfsTer30	p.P1946Hfs*30	ENST00000262367	NM_004380.2	1946	cCa/ca																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	129	577	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	30	888	0	ENST00000269305.4:c.434T>C	p.Leu145Pro	p.L145P	ENST00000269305	NM_001126112.2	145	cTg/cCg																																																																															
BAP1	8314	MSKCC	GRCh37	3	52443613	52443613	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	32	621	0	ENST00000460680.1:c.79delG	p.Val27CysfsTer45	p.V27Cfs*45	ENST00000460680	NM_004656.3	27	Gtg/tg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	143	663	4	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538846	23538846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	90	521	0	ENST00000380871.4:c.593C>T	p.Pro198Leu	p.P198L	ENST00000380871	NM_006167.3	198	cCg/cTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	154	672	1	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	36	672	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	137	616	10	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	85	538	4	ENST00000265335.6:c.2801delA	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	248	570	7	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646981	23646981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs587776408		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	35	841	3	ENST00000261584.4:c.886del	p.Met296Ter	p.M296*	ENST00000261584	NM_024675.3	296	Atg/tg																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660348	227660350	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	61	505	0	ENST00000305123.5:c.3105_3107del	p.Ser1038del	p.S1038del	ENST00000305123	NM_005544.2	1035	tcCTCa/tca																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	127	712	10	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577563	7577563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	28	736	0	ENST00000269305.4:c.718A>G	p.Ser240Gly	p.S240G	ENST00000269305	NM_001126112.2	240	Agt/Ggt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099103	27099103	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	115	654	1	ENST00000324856.7:c.3524del	p.Pro1175HisfsTer5	p.P1175Hfs*5	ENST00000324856	NM_006015.4	1173	atC/at																																																																															
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	160	693	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138172	64138172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	175	732	2	ENST00000334205.4:c.2095C>T	p.Arg699Cys	p.R699C	ENST00000334205	NM_003942.2	699	Cgc/Tgc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157150512	157150512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	138	666	1	ENST00000346085.5:c.1694G>A	p.Arg565Gln	p.R565Q	ENST00000346085	NM_020732.3	565	cGg/cAg																																																																															
GATA1	2623	MSKCC	GRCh37	X	48649561	48649561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	175	447	0	ENST00000376670.3:c.49del	p.Gln17SerfsTer120	p.Q17Sfs*120	ENST00000376670	NM_002049.3	15	ctC/ct																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123263394	123263394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	179	597	1	ENST00000358487.5:c.1349G>A	p.Arg450His	p.R450H	ENST00000358487	NM_000141.4	450	cGc/cAc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025857	48025857	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1472949451		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	70	439	0	ENST00000234420.5:c.741del	p.Lys247AsnfsTer32	p.K247Nfs*32	ENST00000234420	NM_000179.2	245	atA/at																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942053	71942053	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	166	789	1	ENST00000298229.2:c.1322delA	p.Asn441ThrfsTer2	p.N441Tfs*2	ENST00000298229	NM_001567.3	439	ccA/cc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	329	778	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	151	823	9	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	139	893	2	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	131	823	8	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984022	2984022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	26	730	1	ENST00000396946.4:c.508C>T	p.Arg170Cys	p.R170C	ENST00000396946	NM_032415.4	170	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421039	49421039	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs398123721		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	151	642	0	ENST00000301067.7:c.14710C>T	p.Arg4904Ter	p.R4904*	ENST00000301067	NM_003482.3	4904	Cga/Tga																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942593	17942593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	107	593	5	ENST00000458235.1:c.2695C>T	p.Arg899Trp	p.R899W	ENST00000458235	NM_000215.3	899	Cgg/Tgg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117872	70117872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	124	489	0	ENST00000245479.2:c.340G>A	p.Val114Met	p.V114M	ENST00000245479	NM_000346.3	114	Gtg/Atg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007331	143007332	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	132	606	0	ENST00000262992.4:c.2452dupA	p.Arg818LysfsTer26	p.R818Kfs*26	ENST00000262992	NM_001101669.1	818	aga/aAga																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942171	71942171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	223	770	0	ENST00000298229.2:c.1435C>T	p.Arg479Cys	p.R479C	ENST00000298229	NM_001567.3	479	Cgc/Tgc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11313900	11313900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	166	621	1	ENST00000361445.4:c.836G>A	p.Gly279Glu	p.G279E	ENST00000361445	NM_004958.3	279	gGa/gAa																																																																															
STK40	83931	MSKCC	GRCh37	1	36826845	36826846	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	155	733	0	ENST00000373129.3:c.88_89del	p.Lys30GlufsTer31	p.K30Efs*31	ENST00000373129	NM_032017.1	30	AAg/g																																																																															
MYCL1	4610	MSKCC	GRCh37	1	40366751	40366751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	83	556	1	ENST00000397332.2:c.446G>A	p.Arg149Gln	p.R149Q	ENST00000397332	NM_001033082.2	149	cGg/cAg																																																																															
HRAS	3265	MSKCC	GRCh37	11	534318	534318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	21	401	1	ENST00000311189.7:c.5C>T	p.Thr2Met	p.T2M	ENST00000311189		2	aCg/aTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71945645	71945645	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	101	625	0	ENST00000298229.2:c.2401del	p.Arg801AlafsTer44	p.R801Afs*44	ENST00000298229	NM_001567.3	801	Cgc/gc																																																																															
PGR	5241	MSKCC	GRCh37	11	100962543	100962544	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	118	681	0	ENST00000325455.5:c.1853dup	p.Asn618LysfsTer8	p.N618Kfs*8	ENST00000325455	NM_001202474.3	618	aac/aaAc																																																																															
ATM	472	MSKCC	GRCh37	11	108123593	108123593	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	137	625	0	ENST00000278616.4:c.1856del	p.Asn619ThrfsTer6	p.N619Tfs*6	ENST00000278616	NM_000051.3	618	Aaa/aa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245541	46245541	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	52	436	0	ENST00000334344.6:c.3635T>G	p.Leu1212Arg	p.L1212R	ENST00000334344	NM_152641.2	1212	cTt/cGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434054	49434054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	151	721	0	ENST00000301067.7:c.7499C>T	p.Ala2500Val	p.A2500V	ENST00000301067	NM_003482.3	2500	gCg/gTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864483	57864483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	147	673	0	ENST00000228682.2:c.1960G>T	p.Val654Phe	p.V654F	ENST00000228682	NM_005269.2	654	Gtc/Ttc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856434	111856434	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	90	406	4	ENST00000341259.2:c.489delC	p.Thr165ProfsTer32	p.T165Pfs*32	ENST00000341259	NM_005475.2	162	gCc/gc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426649	121426649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	33	666	3	ENST00000257555.6:c.340C>T	p.Arg114Cys	p.R114C	ENST00000257555		114	Cgt/Tgt																																																																															
POLE	5426	MSKCC	GRCh37	12	133219168	133219168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	191	811	0	ENST00000320574.5:c.4876C>T	p.Arg1626Cys	p.R1626C	ENST00000320574	NM_006231.2	1626	Cgc/Tgc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610666	81610666	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	88	480	0	ENST00000298171.2:c.2264T>A	p.Ile755Asn	p.I755N	ENST00000298171	NM_000369.2	755	aTc/aAc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562695	95562697	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	131	545	0	ENST00000343455.3:c.4560_4562del	p.Glu1520del	p.E1520del	ENST00000343455	NM_177438.2	1520	gaAGAt/gat																																																																															
MGA	23269	MSKCC	GRCh37	15	41988354	41988354	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	89	721	0	ENST00000219905.7:c.1146A>C	p.Lys382Asn	p.K382N	ENST00000219905	NM_001164273.1	382	aaA/aaC																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900755	3900755	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	97	598	0	ENST00000262367.5:c.341G>C	p.Ser114Thr	p.S114T	ENST00000262367	NM_004380.2	114	aGc/aCc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831834	72831834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	225	906	1	ENST00000268489.5:c.4747G>A	p.Gly1583Ser	p.G1583S	ENST00000268489	NM_006885.3	1583	Ggt/Agt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991701	72991715	+	inframe_deletion	In_Frame_Del	DEL	CCGCCGCCGCAGCCA	CCGCCGCCGCAGCCA	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	18	437	0	ENST00000268489.5:c.2330_2344del	p.Val777_Ala781del	p.V777_A781del	ENST00000268489	NM_006885.3	777	gTGGCTGCGGCGGCGGcg/gcg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953259	81953259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	78	420	0	ENST00000359376.3:c.2225G>A	p.Arg742His	p.R742H	ENST00000359376	NM_002661.3	742	cGc/cAc																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81972491	81972493	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	162	683	0	ENST00000359376.3:c.3291_3293delCAA	p.Asn1097del	p.N1097del	ENST00000359376	NM_002661.3	1095	gACAac/gac																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351548	89351548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	274	907	1	ENST00000301030.4:c.1402C>T	p.Arg468Cys	p.R468C	ENST00000301030	NM_001256183.1	468	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579440	7579440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	39	777	0	ENST00000269305.4:c.247G>A	p.Ala83Thr	p.A83T	ENST00000269305	NM_001126112.2	83	Gcg/Acg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7989469	7989469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	140	686	1	ENST00000319144.4:c.217C>T	p.Arg73Trp	p.R73W	ENST00000319144	NM_001139.2	73	Cgg/Tgg																																																																															
FLCN	201163	MSKCC	GRCh37	17	17118505	17118505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	113	735	0	ENST00000285071.4:c.1426G>A	p.Asp476Asn	p.D476N	ENST00000285071	NM_144997.5	476	Gac/Aac																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58677897	58677897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	118	474	0	ENST00000305921.3:c.122C>T	p.Pro41Leu	p.P41L	ENST00000305921	NM_003620.3	41	cCg/cTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2207608	2207608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	154	773	2	ENST00000398665.3:c.892C>T	p.Pro298Ser	p.P298S	ENST00000398665	NM_032482.2	298	Ccc/Tcc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	107	803	0	ENST00000222270.7:c.520_521dupCC	p.Lys175GlnfsTer20	p.K175Qfs*20	ENST00000222270	NM_014727.1	172	acc/aCCcc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45864880	45864880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	188	903	1	ENST00000391945.4:c.1139G>A	p.Arg380Gln	p.R380Q	ENST00000391945	NM_000400.3	380	cGg/cAg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39241907	39241907	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	57	430	0	ENST00000402219.2:c.1939A>G	p.Arg647Gly	p.R647G	ENST00000402219	NM_005633.3	647	Agg/Ggg																																																																															
CASP8	841	MSKCC	GRCh37	2	202139630	202139630	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	31	512	2	ENST00000358485.4:c.791T>C	p.Val264Ala	p.V264A	ENST00000358485	NM_001080125.1	264	gTa/gCa																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530142	212530143	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	72	568	0	ENST00000342788.4:c.1776dupA	p.Cys593MetfsTer17	p.C593Mfs*17	ENST00000342788	NM_005235.2	592	-/A																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41818310	41818310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	23	77	0	ENST00000373198.4:c.64G>A	p.Gly22Ser	p.G22S	ENST00000373198	NM_133170.3	22	Ggc/Agc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121275	29121275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	111	933	1	ENST00000328354.6:c.400G>A	p.Asp134Asn	p.D134N	ENST00000328354	NM_007194.3	134	Gat/Aat																																																																															
VHL	7428	MSKCC	GRCh37	3	10191621	10191621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	152	683	0	ENST00000256474.2:c.614G>A	p.Arg205His	p.R205H	ENST00000256474	NM_000551.3	205	cGc/cAc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936539	49936539	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	178	812	0	ENST00000296474.3:c.1388A>G	p.His463Arg	p.H463R	ENST00000296474	NM_002447.2	463	cAc/cGc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52621447	52621447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	175	698	0	ENST00000394830.3:c.2970del	p.Glu991LysfsTer17	p.E991Kfs*17	ENST00000394830	NM_018313.4	990	aaA/aa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480428	89480428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	142	467	0	ENST00000336596.2:c.2265C>A	p.Asn755Lys	p.N755K	ENST00000336596	NM_005233.5	755	aaC/aaA																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138382755	138382756	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1224981079		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	58	545	0	ENST00000289153.2:c.2788dup	p.Thr930AsnfsTer8	p.T930Nfs*8	ENST00000289153	NM_006219.2	930	act/aAct																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664787	138664787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	106	305	0	ENST00000330315.3:c.778C>T	p.Arg260Cys	p.R260C	ENST00000330315	NM_023067.3	260	Cgc/Tgc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1978227	1978227	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	208	864	0	ENST00000382891.5:c.3650del	p.Lys1217ArgfsTer112	p.K1217Rfs*112	ENST00000382891	NM_133335.3	1216	gAa/ga																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748146	41748146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	78	372	0	ENST00000226382.2:c.623G>A	p.Cys208Tyr	p.C208Y	ENST00000226382	NM_003924.3	208	tGc/tAc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467372	66467373	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	45	276	0	ENST00000273854.3:c.896dup	p.Asn299LysfsTer32	p.N299Kfs*32	ENST00000273854	NM_004439.5	299	aat/aaAt																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176520202	176520202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	116	731	0	ENST00000292408.4:c.1121C>T	p.Ala374Val	p.A374V	ENST00000292408	NM_213647.1	374	gCg/gTg																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158764	26158764	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	114	652	1	ENST00000289316.2:c.367A>G	p.Thr123Ala	p.T123A	ENST00000289316	NM_138720.2	123	Acc/Gcc																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910696	29910697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	386	1013	0	ENST00000376809.5:c.240dup	p.Pro81AlafsTer18	p.P81Afs*18	ENST00000376809	NM_002116.7	79	gag/gaGg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710740	117710740	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	94	475	0	ENST00000368508.3:c.1532T>C	p.Val511Ala	p.V511A	ENST00000368508	NM_002944.2	511	gTc/gCc																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023202	150023202	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	30	742	2	ENST00000253339.5:c.61A>G	p.Ser21Gly	p.S21G	ENST00000253339		21	Agt/Ggt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976790	2976790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	236	1013	2	ENST00000396946.4:c.1222C>A	p.Arg408Ser	p.R408S	ENST00000396946	NM_032415.4	408	Cgc/Agc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964485	70964485	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	194	779	0	ENST00000276594.2:c.1543A>C	p.Lys515Gln	p.K515Q	ENST00000276594	NM_024504.3	515	Aag/Cag																																																																															
CD274	29126	MSKCC	GRCh37	9	5462846	5462846	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	45	244	0	ENST00000381577.3:c.407A>C	p.Lys136Thr	p.K136T	ENST00000381577	NM_014143.3	136	aAa/aCa																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139802658	139802658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	98	557	1	ENST00000247668.2:c.503C>T	p.Ala168Val	p.A168V	ENST00000247668	NM_021138.3	168	gCa/gTa																																																																															
ARAF	369	MSKCC	GRCh37	X	47424288	47424288	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs56197559		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	30	339	0	ENST00000377045.4:c.293T>C	p.Met98Thr	p.M98T	ENST00000377045	NM_001654.4	98	aTg/aCg																																																																															
MED12	9968	MSKCC	GRCh37	X	70344915	70344915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	176	382	0	ENST00000374080.3:c.2145G>T	p.Lys715Asn	p.K715N	ENST00000374080		715	aaG/aaT																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696637	47696637	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	27	383	0	ENST00000347630.2:c.311T>G	p.Phe104Cys	p.F104C	ENST00000347630	NM_001007230.1	104	tTc/tGc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426940	49426941	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCCC			P-0023760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	11	329	0	ENST00000301067.7:c.11544_11547dup	p.His3850GlyfsTer163	p.H3850Gfs*163	ENST00000301067	NM_003482.3	3849	-/GGGA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0023764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	32	227	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0023764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	59	441	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
INSR	3643	MSKCC	GRCh37	19	7166282	7166282	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	32	391	0	ENST00000302850.5:c.1744G>T	p.Gly582Cys	p.G582C	ENST00000302850	NM_000208.2	582	Ggt/Tgt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831467	72831467	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0023764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	103	358	0	ENST00000268489.5:c.5114C>G	p.Ser1705Ter	p.S1705*	ENST00000268489	NM_006885.3	1705	tCa/tGa																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	99	387	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874781	151874781	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	11	215	0	ENST00000262189.6:c.7757C>G	p.Ser2586Cys	p.S2586C	ENST00000262189	NM_170606.2	2586	tCt/tGt																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257129	19257129	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	22	235	0	ENST00000162023.5:c.834G>A	p.Trp278Ter	p.W278*	ENST00000162023		278	tgG/tgA																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	126	498	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0023778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	92	276	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609291	81609291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	11	167	0	ENST00000298171.2:c.889G>A	p.Glu297Lys	p.E297K	ENST00000298171	NM_000369.2	297	Gag/Aag																																																																															
EZH1	2145	MSKCC	GRCh37	17	40864438	40864438	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139326526		P-0023778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	45	617	2	ENST00000428826.2:c.1270G>A	p.Val424Ile	p.V424I	ENST00000428826		424	Gta/Ata																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223419	36223426	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTGGAC	ACCTGGAC	-			P-0023778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	32	637	0	ENST00000222270.7:c.5969_5976del	p.Asp1990ValfsTer9	p.D1990Vfs*9	ENST00000222270	NM_014727.1	1990	gACCTGGAC/g																																																																															
POLD1	5424	MSKCC	GRCh37	19	50920307	50920307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	86	485	0	ENST00000440232.2:c.3073G>A	p.Val1025Met	p.V1025M	ENST00000440232	NM_002691.3	1025	Gtg/Atg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288958	212288958	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	36	461	0	ENST00000342788.4:c.2788C>G	p.Pro930Ala	p.P930A	ENST00000342788	NM_005235.2	930	Cct/Gct																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091172	29091172	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	53	290	0	ENST00000328354.6:c.1318A>T	p.Ile440Phe	p.I440F	ENST00000328354	NM_007194.3	440	Atc/Ttc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38958821	38958821	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	27	323	0	ENST00000357387.3:c.2291A>C	p.Lys764Thr	p.K764T	ENST00000357387	NM_152756.3	764	aAa/aCa																																																																															
ETV1	2115	MSKCC	GRCh37	7	14027791	14027791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	30	308	0	ENST00000405192.2:c.53G>T	p.Arg18Leu	p.R18L	ENST00000405192	NM_001163147.1	18	cGt/cTt																																																																															
AR	367	MSKCC	GRCh37	X	66942777	66942777	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	56	525	2	ENST00000374690.3:c.2558G>T	p.Cys853Phe	p.C853F	ENST00000374690	NM_000044.3	853	tGc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0023779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	180	403	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11136162	11136162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	152	411	2	ENST00000344626.4:c.3146C>T	p.Pro1049Leu	p.P1049L	ENST00000344626	NM_003072.3	1049	cCc/cTc																																																																															
APC	324	MSKCC	GRCh37	5	112155011	112155011	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	196	401	0	ENST00000257430.4:c.1282G>T	p.Glu428Ter	p.E428*	ENST00000257430	NM_000038.5	428	Gaa/Taa																																																																															
STK11	6794	MSKCC	GRCh37	19	1207042	1207042	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	191	407	1	ENST00000326873.7:c.130A>T	p.Lys44Ter	p.K44*	ENST00000326873	NM_000455.4	44	Aag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579336	7579372	+	frameshift_variant	Frame_Shift_Del	DEL	CCCAGAATGCAAGAAGCCCAGACGGAAACCGTAGCTG	CCCAGAATGCAAGAAGCCCAGACGGAAACCGTAGCTG	-			P-0023779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	121	398	0	ENST00000269305.4:c.315_351del	p.Ser106GlnfsTer5	p.S106Qfs*5	ENST00000269305	NM_001126112.2	105	ggCAGCTACGGTTTCCGTCTGGGCTTCTTGCATTCTGGG/gg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579449	7579449	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	164	478	0	ENST00000269305.4:c.238C>G	p.Pro80Ala	p.P80A	ENST00000269305	NM_001126112.2	80	Cct/Gct																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600490	10600502	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGGCCACCAAG	TGGGGCCACCAAG	-			P-0023779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	134	381	0	ENST00000171111.5:c.1353_1365del	p.His451GlnfsTer3	p.H451Qfs*3	ENST00000171111	NM_203500.1	451	caCTTGGTGGCCCCA/ca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55211116	55211116	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	154	350	0	ENST00000275493.2:c.359C>G	p.Ala120Gly	p.A120G	ENST00000275493	NM_005228.3	120	gCa/gGa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151841849	151841849	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	109	237	0	ENST00000262189.6:c.14292G>C	p.Lys4764Asn	p.K4764N	ENST00000262189	NM_170606.2	4764	aaG/aaC																																																																															
PREX2	80243	MSKCC	GRCh37	8	68984772	68984772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	111	341	1	ENST00000288368.4:c.1536G>A	p.Met512Ile	p.M512I	ENST00000288368	NM_024870.2	512	atG/atA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	350	682	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0023731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	205	759	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0023731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	282	482	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0023731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	102	288	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577522	7577522	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	210	746	0	ENST00000269305.4:c.759del	p.Ile254SerfsTer91	p.I254Sfs*91	ENST00000269305	NM_001126112.2	253	acC/ac																																																																															
BIRC3	330	MSKCC	GRCh37	11	102198862	102198862	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0023731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	102	490	0	ENST00000263464.3:c.1032+1G>T		p.X344_splice	ENST00000263464	NM_001165.4	344																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53244025	53244025	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	106	681	0	ENST00000375401.3:c.968A>C	p.Glu323Ala	p.E323A	ENST00000375401	NM_004187.3	323	gAg/gCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0023737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	419	701	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120512269	120512269	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	70	586	0	ENST00000256646.2:c.973G>C	p.Val325Leu	p.V325L	ENST00000256646	NM_024408.3	325	Gta/Cta																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62311283	62311283	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	75	371	0	ENST00000508582.2:c.1191C>G	p.Ile397Met	p.I397M	ENST00000508582		397	atC/atG																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864407	162864407	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	52	575	0	ENST00000366898.1:c.106G>T	p.Val36Phe	p.V36F	ENST00000366898	NM_004562.2	36	Gtt/Ttt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0023745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	28	675	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55211008	55211008	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	41	521	1	ENST00000275493.2:c.251A>T	p.Glu84Val	p.E84V	ENST00000275493	NM_005228.3	84	gAg/gTg																																																																															
AKT3	10000	MSKCC	GRCh37	1	243777031	243777031	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	35	561	0	ENST00000263826.5:c.638A>G	p.Tyr213Cys	p.Y213C	ENST00000263826	NM_005465.4	213	tAt/tGt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0023751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	136	608	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0023751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	205	756	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636818	8636818	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146973770		P-0023751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	131	582	3	ENST00000356435.5:c.91G>A	p.Val31Ile	p.V31I	ENST00000356435		31	Gtt/Att																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032159	10032159	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	137	733	0	ENST00000330684.3:c.664A>T	p.Ile222Phe	p.I222F	ENST00000330684	NM_001134407.1	222	Atc/Ttc																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435418	56435418	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	212	700	0	ENST00000407977.2:c.1719del	p.Gly574GlufsTer126	p.G574Efs*126	ENST00000407977		573	acC/ac																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8331724	8331724	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	94	448	0	ENST00000356435.5:c.5392C>T	p.Arg1798Ter	p.R1798*	ENST00000356435		1798	Cga/Tga																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031915	10031915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	78	847	0	ENST00000330684.3:c.908C>T	p.Ala303Val	p.A303V	ENST00000330684	NM_001134407.1	303	gCa/gTa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72833975	72833975	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	83	711	0	ENST00000268489.5:c.3918del	p.Pro1307GlnfsTer38	p.P1307Qfs*38	ENST00000268489	NM_006885.3	1306	gtT/gt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	53	487	0	ENST00000263967.3:c.3012G>A	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atA																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115852	8115853	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-	rs1085307641		P-0023754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	43	650	0	ENST00000346208.3:c.1198_1199del	p.Met400ValfsTer106	p.M400Vfs*106	ENST00000346208		400	ATg/g																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0023718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	514	972	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325894	65325894	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	202	568	0	ENST00000342505.4:c.1228G>C	p.Asp410His	p.D410H	ENST00000342505	NM_002227.2	410	Gat/Cat																																																																															
BRCA1	672	MSKCC	GRCh37	17	41201203	41201203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	79	823	0	ENST00000357654.3:c.5341G>C	p.Glu1781Gln	p.E1781Q	ENST00000357654	NM_007294.3	1781	Gaa/Caa																																																																															
JAK2	3717	MSKCC	GRCh37	9	5065009	5065009	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	79	500	0	ENST00000381652.3:c.1183A>G	p.Asn395Asp	p.N395D	ENST00000381652	NM_004972.3	395	Aat/Gat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	57	748	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BLM	641	MSKCC	GRCh37	15	91303491	91303491	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	42	584	0	ENST00000355112.3:c.1202T>A	p.Leu401His	p.L401H	ENST00000355112	NM_000057.2	401	cTt/cAt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266835	+	missense_variant	Missense_Mutation	DNP	TC	TC	CA			P-0023719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	30	658	1	ENST00000335508.6:c.2097_2098delinsTG	p.Gln699_Lys700delinsHisGlu	p.Q699_K700delinsHE	ENST00000335508	NM_012433.2	699	caGAaa/caTGaa																																																																															
BCL6	604	MSKCC	GRCh37	3	187443403	187443403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	30	434	0	ENST00000232014.4:c.1723C>T	p.Arg575Cys	p.R575C	ENST00000232014	NM_001130845.1	575	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0023720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	228	853	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984819	11984824	+	frameshift_variant	Frame_Shift_Del	DEL	AACCAA	AACCAA	TATG			P-0023720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	75	587	1	ENST00000353533.5:c.365_370delinsTATG	p.Lys122IlefsTer9	p.K122Ifs*9	ENST00000353533	NM_003010.3	122	aAACCAAgt/aTATGgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	70	824	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577119	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	115	910	0	ENST00000269305.4:c.819dup	p.Val274CysfsTer32	p.V274Cfs*32	ENST00000269305	NM_001126112.2	273	-/T																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478817	56478817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	155	899	1	ENST00000267101.3:c.273G>T	p.Met91Ile	p.M91I	ENST00000267101	NM_001982.3	91	atG/atT																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137348	64137348	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	65	909	0	ENST00000334205.4:c.1780A>C	p.Ser594Arg	p.S594R	ENST00000334205	NM_003942.2	594	Agc/Cgc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11100088	11100095	+	frameshift_variant	Frame_Shift_Del	DEL	AGGCCCTC	AGGCCCTC	-			P-0023721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	103	801	0	ENST00000344626.4:c.1218_1225del	p.Leu407AlafsTer28	p.L407Afs*28	ENST00000344626	NM_003072.3	405	aAGGCCCTC/a																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401176	139401176	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	52	797	3	ENST00000277541.6:c.3893G>T	p.Gly1298Val	p.G1298V	ENST00000277541	NM_017617.3	1298	gGt/gTt																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289234	33289234	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	251	475	0	ENST00000374542.5:c.318C>A	p.Cys106Ter	p.C106*	ENST00000374542	NM_001141970.1	106	tgC/tgA																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572290	64572290	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0023732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	313	608	0	ENST00000337652.1:c.1366-2A>T		p.X456_splice	ENST00000337652	NM_130803.2	456																																																																																
MET	4233	MSKCC	GRCh37	7	116399446	116399446	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0023732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	236	603	1	ENST00000397752.3:c.2266G>T	p.Gly756Cys	p.G756C	ENST00000397752	NM_000245.2	756	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0023787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	235	276	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416516	49416516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	284	349	1	ENST00000301067.7:c.16195G>A	p.Val5399Met	p.V5399M	ENST00000301067	NM_003482.3	5399	Gtg/Atg																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125499138	125499138	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	171	240	0	ENST00000428830.2:c.302del	p.Gly101AlafsTer26	p.G101Afs*26	ENST00000428830	NM_001114121.2	101	Ggc/gc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28896412	28896412	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	60	231	0	ENST00000282397.4:c.3038T>A	p.Leu1013Gln	p.L1013Q	ENST00000282397	NM_002019.4	1013	cTg/cAg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89858410	89858410	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	140	420	2	ENST00000389301.3:c.1150G>T	p.Val384Phe	p.V384F	ENST00000389301	NM_000135.2	384	Gtt/Ttt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211784	2211795	+	protein_altering_variant	In_Frame_Del	DEL	ATACACAAAGAC	ATACACAAAGAC	CTGGAA			P-0023787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	144	376	2	ENST00000398665.3:c.1500_1511delinsCTGGAA	p.Tyr501_Thr504delinsTrpAsn	p.Y501_T504delinsWN	ENST00000398665	NM_032482.2	500	gcATACACAAAGACc/gcCTGGAAc																																																																															
ERF	2077	MSKCC	GRCh37	19	42752756	42752756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	48	388	0	ENST00000222329.4:c.1508G>A	p.Gly503Asp	p.G503D	ENST00000222329	NM_006494.2	503	gGc/gAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873311	151873311	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	17	173	0	ENST00000262189.6:c.9227T>A	p.Ile3076Asn	p.I3076N	ENST00000262189	NM_170606.2	3076	aTt/aAt																																																																															
B2M	567	MSKCC	GRCh37	15	45003768	45003797	+	inframe_deletion	In_Frame_Del	DEL	TGTGCTCGCGCTACTCTCTCTTTCTGGCCT	TGTGCTCGCGCTACTCTCTCTTTCTGGCCT	-			P-0023787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	68	273	0	ENST00000558401.1:c.24_53del	p.Val9_Leu18del	p.V9_L18del	ENST00000558401	NM_004048.2	8	gcTGTGCTCGCGCTACTCTCTCTTTCTGGCCTg/gcg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641091	23641092	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	A			P-0023787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	140	349	1	ENST00000261584.4:c.2383_2384delinsT	p.Gln795Ter	p.Q795*	ENST00000261584	NM_024675.3	795	CAa/Ta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0023791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	117	332	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805730	46805730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	113	325	2	ENST00000290295.7:c.226G>T	p.Ala76Ser	p.A76S	ENST00000290295	NM_006361.5	76	Gct/Tct																																																																															
JAK1	3716	MSKCC	GRCh37	1	65348960	65348960	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	61	126	0	ENST00000342505.4:c.205C>T	p.Arg69Cys	p.R69C	ENST00000342505	NM_002227.2	69	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398228	25398228	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	59	341	0	ENST00000256078.4:c.91G>T	p.Glu31Ter	p.E31*	ENST00000256078	NM_033360.2	31	Gaa/Taa																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502437	186502437	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	57	206	0	ENST00000323963.5:c.160G>C	p.Glu54Gln	p.E54Q	ENST00000323963		54	Gag/Cag																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073487	8073487	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0023791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	26	321	0	ENST00000377482.5:c.1172C>G	p.Ser391Ter	p.S391*	ENST00000377482	NM_018948.3	391	tCa/tGa																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436536	110436536	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	43	427	0	ENST00000375856.3:c.1865A>T	p.Lys622Met	p.K622M	ENST00000375856	NM_003749.2	622	aAg/aTg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602268	10602268	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	122	359	0	ENST00000171111.5:c.1310A>G	p.His437Arg	p.H437R	ENST00000171111	NM_203500.1	437	cAc/cGc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11169491	11169510	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCTCAACGACCTAGAGAA	AGCCTCAACGACCTAGAGAA	-			P-0023791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	116	379	0	ENST00000344626.4:c.4561_4580del	p.Ser1521GlyfsTer21	p.S1521Gfs*21	ENST00000344626	NM_003072.3	1521	AGCCTCAACGACCTAGAGAAg/g																																																																															
TOP1	7150	MSKCC	GRCh37	20	39725906	39725906	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	17	252	0	ENST00000361337.2:c.777C>G	p.Phe259Leu	p.F259L	ENST00000361337	NM_003286.2	259	ttC/ttG																																																																															
NF2	4771	MSKCC	GRCh37	22	30050691	30050691	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	117	277	0	ENST00000338641.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000338641	NM_000268.3	165	Caa/Taa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526312	31526312	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	160	469	0	ENST00000344624.3:c.728G>C	p.Arg243Thr	p.R243T	ENST00000344624		243	aGg/aCg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517812	176517812	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	100	341	1	ENST00000292408.4:c.422G>T	p.Ser141Ile	p.S141I	ENST00000292408	NM_213647.1	141	aGt/aTt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170367	32170367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	110	302	0	ENST00000375023.3:c.3241G>A	p.Gly1081Ser	p.G1081S	ENST00000375023	NM_004557.3	1081	Ggc/Agc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36923372	36923372	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	129	333	0	ENST00000358127.4:c.890A>G	p.Gln297Arg	p.Q297R	ENST00000358127	NM_001280556.1	297	cAg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0023795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	22	326	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0023795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	24	303	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581201	48581201	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	16	256	1	ENST00000342988.3:c.505C>T	p.Gln169Ter	p.Q169*	ENST00000342988	NM_005359.5	169	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115973	8115974	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0023797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	12	242	0	ENST00000346208.3:c.1319_1320del	p.Thr440SerfsTer66	p.T440Sfs*66	ENST00000346208		440	aCC/a																																																																															
DIS3	22894	MSKCC	GRCh37	13	73336157	73336157	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	12	225	0	ENST00000377767.4:c.2246T>C	p.Met749Thr	p.M749T	ENST00000377767	NM_014953.3	749	aTg/aCg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95570416	95570416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	17	234	0	ENST00000343455.3:c.3317C>T	p.Ser1106Phe	p.S1106F	ENST00000343455	NM_177438.2	1106	tCt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	48	333	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578219	7578220	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	110	354	0	ENST00000269305.4:c.629dup	p.Asn210LysfsTer6	p.N210Kfs*6	ENST00000269305	NM_001126112.2	210	aac/aaAc																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981300	201981300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	99	308	1	ENST00000359651.3:c.379G>A	p.Asp127Asn	p.D127N	ENST00000359651		127	Gac/Aac																																																																															
FLT1	2321	MSKCC	GRCh37	13	28895619	28895619	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	81	273	0	ENST00000282397.4:c.3155A>G	p.Asp1052Gly	p.D1052G	ENST00000282397	NM_002019.4	1052	gAt/gGt																																																																															
RB1	5925	MSKCC	GRCh37	13	48955499	48955499	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	31	245	0	ENST00000267163.4:c.1615G>T	p.Glu539Ter	p.E539*	ENST00000267163	NM_000321.2	539	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	44	513	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SDHAF2	54949	MSKCC	GRCh37	11	61197647	61197647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	41	518	0	ENST00000301761.2:c.29C>T	p.Ser10Leu	p.S10L	ENST00000301761	NM_017841.2	10	tCg/tTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179502	56179502	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	50	300	0	ENST00000399503.3:c.3815A>C	p.Lys1272Thr	p.K1272T	ENST00000399503	NM_005921.1	1272	aAa/aCa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3658883	3658883	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	56	630	0	ENST00000294008.3:c.83del	p.Pro28LeufsTer16	p.P28Lfs*16	ENST00000294008	NM_032444.2	28	cCt/ct																																																																															
CDH1	999	MSKCC	GRCh37	16	68835700	68835701	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0023601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	46	623	0	ENST00000261769.5:c.292_293del	p.Phe98LeufsTer69	p.F98Lfs*69	ENST00000261769	NM_004360.3	97	caTTtc/catc																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44923045	44923046	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	58	708	0	ENST00000377967.4:c.1907dup	p.Ser637IlefsTer2	p.S637Ifs*2	ENST00000377967	NM_021140.2	636	cta/cTta																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178080	56178082	+	frameshift_variant	Frame_Shift_Del	DEL	CTC	CTC	T			P-0023601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	22	344	0	ENST00000399503.3:c.3053_3055delinsT	p.Ser1018PhefsTer17	p.S1018Ffs*17	ENST00000399503	NM_005921.1	1018	tCTCct/tTct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	149	668	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165077	47165078	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0023602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	115	377	0	ENST00000409792.3:c.1048_1049del	p.Asp350PhefsTer2	p.D350Ffs*2	ENST00000409792	NM_014159.6	350	GAt/t																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260596	16260596	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	36	688	1	ENST00000375759.3:c.7861G>T	p.Val2621Phe	p.V2621F	ENST00000375759	NM_015001.2	2621	Gtt/Ttt																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981136	201981143	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTGGAC	TTCTGGAC	-			P-0023602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	318	627	0	ENST00000359651.3:c.216_223del	p.Leu73AspfsTer16	p.L73Dfs*16	ENST00000359651		72	gTTCTGGAC/g																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281275	49281275	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200289548		P-0023602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	117	726	0	ENST00000282018.3:c.322G>A	p.Asp108Asn	p.D108N	ENST00000282018	NM_020377.2	108	Gac/Aac																																																																															
MAX	4149	MSKCC	GRCh37	14	65560488	65560488	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	114	579	1	ENST00000358664.4:c.109del	p.Asp37ThrfsTer28	p.D37Tfs*28	ENST00000358664	NM_002382.4	37	Gac/ac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40757458	40757458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	101	682	1	ENST00000373198.4:c.2840G>A	p.Arg947Gln	p.R947Q	ENST00000373198	NM_133170.3	947	cGg/cAg																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252877	36252877	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	19	478	1	ENST00000300305.3:c.485G>T	p.Arg162Met	p.R162M	ENST00000300305		162	aGg/aTg																																																																															
KIT	3815	MSKCC	GRCh37	4	55602977	55602977	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	106	382	0	ENST00000288135.5:c.2687C>G	p.Pro896Arg	p.P896R	ENST00000288135	NM_000222.2	896	cCt/cGt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99440132	99440132	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	57	361	0	ENST00000268035.6:c.1100G>A	p.Gly367Glu	p.G367E	ENST00000268035	NM_000875.3	367	gGg/gAg																																																																															
AKT2	208	MSKCC	GRCh37	19	40743901	40743901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	78	563	0	ENST00000392038.2:c.806G>A	p.Arg269Gln	p.R269Q	ENST00000392038	NM_001626.4	269	cGg/cAg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156848975	156849006	+	frameshift_variant	Frame_Shift_Del	DEL	GGTCTGGGGCAGCTGCTGGCCGTGGCTAGCCA	GGTCTGGGGCAGCTGCTGGCCGTGGCTAGCCA	-			P-0023605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	90	583	0	ENST00000524377.1:c.1871_1902del	p.Leu624ArgfsTer34	p.L624Rfs*34	ENST00000524377	NM_002529.3	623	GGTCTGGGGCAGCTGCTGGCCGTGGCTAGCCAg/g																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497383	149497383	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	69	455	0	ENST00000261799.4:c.2935A>T	p.Arg979Trp	p.R979W	ENST00000261799	NM_002609.3	979	Agg/Tgg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	156	468	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38274849	38274849	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs779707422		P-0023609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	1967	669	1	ENST00000425967.3:c.1731C>A	p.Asn577Lys	p.N577K	ENST00000425967	NM_001174067.1	577	aaC/aaA																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720711	89720712	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	35	120	0	ENST00000371953.3:c.867dup	p.Val290SerfsTer8	p.V290Sfs*8	ENST00000371953	NM_000314.4	288	gaa/gAaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68842439	68842439	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	247	718	2	ENST00000261769.5:c.504del	p.Gly169AlafsTer46	p.G169Afs*46	ENST00000261769	NM_004360.3	167	gAa/ga																																																																															
RAC1	5879	MSKCC	GRCh37	7	6439769	6439788	+	frameshift_variant	Frame_Shift_Del	DEL	ATTTGCTTTTCCCTTGTGAG	ATTTGCTTTTCCCTTGTGAG	-			P-0023609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	245	594	0	ENST00000356142.4:c.295_314del	p.Ile99SerfsTer5	p.I99Sfs*5	ENST00000356142	NM_018890.3	99	ATTTGCTTTTCCCTTGTGAGt/t																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692920	89692921	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	22	572	0	ENST00000371953.3:c.405dupA	p.Cys136MetfsTer44	p.C136Mfs*44	ENST00000371953	NM_000314.4	135	ata/atAa																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859427	57859427	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151317566		P-0023625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	85	664	0	ENST00000228682.2:c.572G>A	p.Arg191Gln	p.R191Q	ENST00000228682	NM_005269.2	191	cGg/cAg																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670711	134670711	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	83	673	0	ENST00000398015.3:c.622G>T	p.Glu208Ter	p.E208*	ENST00000398015	NM_004441.4	208	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0023630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	268	594	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0023630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	76	313	0	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164447	47164447	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0023630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	170	452	0	ENST00000409792.3:c.1679C>G	p.Ser560Ter	p.S560*	ENST00000409792	NM_014159.6	560	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579398	7579398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	253	721	1	ENST00000269305.4:c.289G>T	p.Val97Phe	p.V97F	ENST00000269305	NM_001126112.2	97	Gtc/Ttc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2213552	2213561	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCCTGGGT	GCTCCTGGGT	-			P-0023630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	224	692	0	ENST00000398665.3:c.1574_1583del	p.Leu525ArgfsTer29	p.L525Rfs*29	ENST00000398665	NM_032482.2	524	caGCTCCTGGGT/ca																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610576	10610576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	244	688	0	ENST00000171111.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000171111	NM_203500.1	45	tCc/tTc																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659802	227659802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	126	362	0	ENST00000305123.5:c.3653C>T	p.Ser1218Phe	p.S1218F	ENST00000305123	NM_005544.2	1218	tCc/tTc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259390	36259390	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	202	575	0	ENST00000300305.3:c.101C>G	p.Ala34Gly	p.A34G	ENST00000300305		34	gCc/gGc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636842	8636842	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	161	439	1	ENST00000356435.5:c.67C>T	p.Pro23Ser	p.P23S	ENST00000356435		23	Cct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	172	694	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
FYN	2534	MSKCC	GRCh37	6	111983093	111983093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	161	701	0	ENST00000368678.4:c.1454C>T	p.Pro485Leu	p.P485L	ENST00000368678		485	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577530	7577530	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	150	791	0	ENST00000269305.4:c.751A>T	p.Ile251Phe	p.I251F	ENST00000269305	NM_001126112.2	251	Atc/Ttc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729888	41729888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	164	528	0	ENST00000242208.4:c.641G>A	p.Arg214Gln	p.R214Q	ENST00000242208	NM_002192.2	214	cGg/cAg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149516600	149516600	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs144923639		P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	153	730	0	ENST00000261799.4:c.11C>A	p.Pro4Gln	p.P4Q	ENST00000261799	NM_002609.3	4	cCg/cAg																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93964483	93964483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	148	675	1	ENST00000369303.4:c.2414C>T	p.Pro805Leu	p.P805L	ENST00000369303	NM_004440.3	805	cCc/cTc																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514211	69514211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	140	745	2	ENST00000294312.3:c.470G>A	p.Arg157Lys	p.R157K	ENST00000294312	NM_005117.2	157	aGa/aAa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28886150	28886150	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	36	587	1	ENST00000282397.4:c.3472C>A	p.Leu1158Ile	p.L1158I	ENST00000282397	NM_002019.4	1158	Ctt/Att																																																																															
MGA	23269	MSKCC	GRCh37	15	42057123	42057133	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTTGTGATG	ACCTTGTGATG	-			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	42	780	0	ENST00000219905.7:c.7786_7796del	p.Leu2596SerfsTer23	p.L2596Sfs*23	ENST00000219905	NM_001164273.1	2595	aACCTTGTGATG/a																																																																															
TSC2	7249	MSKCC	GRCh37	16	2106644	2106644	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	48	677	0	ENST00000219476.3:c.649-1G>A		p.X217_splice	ENST00000219476	NM_000548.3	217																																																																																
AKT2	208	MSKCC	GRCh37	19	40741932	40741932	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202125073		P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	100	817	2	ENST00000392038.2:c.1040G>A	p.Arg347His	p.R347H	ENST00000392038	NM_001626.4	347	cGc/cAc																																																																															
ALK	238	MSKCC	GRCh37	2	30143461	30143461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	51	454	0	ENST00000389048.3:c.65G>T	p.Gly22Val	p.G22V	ENST00000389048	NM_004304.4	22	gGg/gTg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448570	89448570	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	252	642	0	ENST00000336596.2:c.1534C>G	p.Arg512Gly	p.R512G	ENST00000336596	NM_005233.5	512	Cga/Gga																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99823121	99823121	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	61	450	0	ENST00000280892.6:c.91A>T	p.Thr31Ser	p.T31S	ENST00000280892	NM_001130678.1	31	Act/Tct																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513542	149513542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	53	644	0	ENST00000261799.4:c.661G>T	p.Val221Leu	p.V221L	ENST00000261799	NM_002609.3	221	Gtg/Ttg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273091	55273091	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	84	650	0	ENST00000275493.2:c.3414T>G	p.Tyr1138Ter	p.Y1138*	ENST00000275493	NM_005228.3	1138	taT/taG																																																																															
MET	4233	MSKCC	GRCh37	7	116339792	116339792	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	162	501	2	ENST00000397752.3:c.654G>T	p.Arg218Ser	p.R218S	ENST00000397752	NM_000245.2	218	agG/agT																																																																															
TEK	7010	MSKCC	GRCh37	9	27180363	27180363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	105	422	1	ENST00000380036.4:c.1027G>A	p.Glu343Lys	p.E343K	ENST00000380036	NM_000459.3	343	Gaa/Aaa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139404296	139404296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	85	787	0	ENST00000277541.6:c.2858C>T	p.Pro953Leu	p.P953L	ENST00000277541	NM_017617.3	953	cCc/cTc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922978	39922978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	63	736	0	ENST00000378444.4:c.3730G>A	p.Glu1244Lys	p.E1244K	ENST00000378444	NM_001123385.1	1244	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720737	89720737	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0023663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	12	124	0	ENST00000371953.3:c.888T>A	p.Cys296Ter	p.C296*	ENST00000371953	NM_000314.4	296	tgT/tgA																																																																															
CDH1	999	MSKCC	GRCh37	16	68772239	68772239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	275	721	1	ENST00000261769.5:c.88C>T	p.Pro30Ser	p.P30S	ENST00000261769	NM_004360.3	30	Cct/Tct																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0023664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	93	752	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480092	50480092	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	20	482	0	ENST00000394963.4:c.326A>C	p.Gln109Pro	p.Q109P	ENST00000394963	NM_003076.4	109	cAg/cCg																																																																															
UPF1	5976	MSKCC	GRCh37	19	18968148	18968148	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	26	525	0	ENST00000262803.5:c.1988A>C	p.His663Pro	p.H663P	ENST00000262803	NM_002911.3	663	cAc/cCc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46267781	46267781	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	21	502	0	ENST00000371998.3:c.2542A>G	p.Ile848Val	p.I848V	ENST00000371998		848	Att/Gtt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	209	568	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143999	11143999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1171822727		P-0023665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	122	468	1	ENST00000358026.2:c.3580G>A	p.Gly1194Arg	p.G1194R	ENST00000358026	NM_001128849.1	1194	Ggg/Agg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982440	25982440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	113	424	0	ENST00000435504.4:c.850C>T	p.Arg284Ter	p.R284*	ENST00000435504		284	Cga/Tga																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43730535	43730536	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	107	453	0	ENST00000382044.4:c.3177dup	p.Thr1060HisfsTer26	p.T1060Hfs*26	ENST00000382044	NM_001141980.1	1059	-/C																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37871776	37871776	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	174	727	0	ENST00000269571.5:c.1300C>T	p.Arg434Ter	p.R434*	ENST00000269571		434	Cga/Tga																																																																															
MLH1	4292	MSKCC	GRCh37	3	37089016	37089016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	69	285	0	ENST00000231790.2:c.1738G>A	p.Ala580Thr	p.A580T	ENST00000231790	NM_000249.3	580	Gca/Aca																																																																															
RXRA	6256	MSKCC	GRCh37	9	137328441	137328441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	199	721	1	ENST00000481739.1:c.1370C>T	p.Ala457Val	p.A457V	ENST00000481739	NM_002957.4	457	gCg/gTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0023668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	83	303	2	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0023668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	93	489	2	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
RB1	5925	MSKCC	GRCh37	13	48951156	48951156	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	26	428	0	ENST00000267163.4:c.1318G>T	p.Glu440Ter	p.E440*	ENST00000267163	NM_000321.2	440	Gaa/Taa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427606	427606	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	26	353	0	ENST00000399788.2:c.2563G>C	p.Glu855Gln	p.E855Q	ENST00000399788	NM_001042603.1	855	Gag/Cag																																																																															
RARA	5914	MSKCC	GRCh37	17	38512266	38512266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	43	489	0	ENST00000254066.5:c.1177G>A	p.Glu393Lys	p.E393K	ENST00000254066	NM_000964.3	393	Gag/Aag																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133746	55133746	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	35	422	0	ENST00000257290.5:c.960del	p.Phe321SerfsTer17	p.F321Sfs*17	ENST00000257290	NM_006206.4	320	aCc/ac																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518193	103518193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	63	264	0	ENST00000355739.4:c.2131G>T	p.Asp711Tyr	p.D711Y	ENST00000355739	NM_000123.3	711	Gat/Tat																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38187300	38187301	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	117	578	0	ENST00000317025.8:c.1176dup	p.Ile393TyrfsTer4	p.I393Yfs*4	ENST00000317025	NM_023034.1	392	-/T																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	135	782	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0023671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	63	781	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291504	15291504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	42	665	3	ENST00000263388.2:c.3130G>A	p.Ala1044Thr	p.A1044T	ENST00000263388	NM_000435.2	1044	Gca/Aca																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860499	151860499	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	59	843	1	ENST00000262189.6:c.10163A>G	p.Asn3388Ser	p.N3388S	ENST00000262189	NM_170606.2	3388	aAc/aGc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306741	41306741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	33	633	2	ENST00000373198.4:c.918G>T	p.Trp306Cys	p.W306C	ENST00000373198	NM_133170.3	306	tgG/tgT																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0023673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	56	705	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																															
ATR	545	MSKCC	GRCh37	3	142266714	142266714	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	48	687	0	ENST00000350721.4:c.3210A>T	p.Gln1070His	p.Q1070H	ENST00000350721	NM_001184.3	1070	caA/caT																																																																															
RASA1	5921	MSKCC	GRCh37	5	86674306	86674306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	34	555	0	ENST00000274376.6:c.2438C>A	p.Ala813Asp	p.A813D	ENST00000274376	NM_002890.2	813	gCt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	292	783	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	113	326	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	173	785	0	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739819	41739819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	127	719	0	ENST00000242208.4:c.154C>A	p.Pro52Thr	p.P52T	ENST00000242208	NM_002192.2	52	Cca/Aca																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252940	36252940	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	298	622	0	ENST00000300305.3:c.422C>A	p.Ser141Ter	p.S141*	ENST00000300305		141	tCg/tAg																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518442	204518442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	128	547	0	ENST00000367182.3:c.1105C>T	p.Pro369Ser	p.P369S	ENST00000367182	NM_001278516.1	369	Cct/Tct																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427372	427372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	183	769	0	ENST00000399788.2:c.2797G>A	p.Ala933Thr	p.A933T	ENST00000399788	NM_001042603.1	933	Gca/Aca																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713483	30713483	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	166	639	0	ENST00000359013.4:c.883C>T	p.Gln295Ter	p.Q295*	ENST00000359013	NM_001024847.2	295	Cag/Tag																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713811	30713811	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	144	822	0	ENST00000359013.4:c.1211A>G	p.Asp404Gly	p.D404G	ENST00000359013	NM_001024847.2	404	gAc/gGc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265619	41266368	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCAC	TTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCAC	-			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	208	484	0	ENST00000349496.5:c.13+49_242-75del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67591095	67591148	+	inframe_deletion	In_Frame_Del	DEL	TGAACAGCATTAAACCAGACCTTATCCAGCTGAGAAAGACGAGAGACCAATACT	TGAACAGCATTAAACCAGACCTTATCCAGCTGAGAAAGACGAGAGACCAATACT	-			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	51	447	0	ENST00000274335.5:c.1691_1744del	p.Asn564_Leu581del	p.N564_L581del	ENST00000274335		563	aTGAACAGCATTAAACCAGACCTTATCCAGCTGAGAAAGACGAGAGACCAATACTtg/atg																																																																															
APC	324	MSKCC	GRCh37	5	112179746	112179746	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	114	463	0	ENST00000257430.4:c.8455A>G	p.Lys2819Glu	p.K2819E	ENST00000257430	NM_000038.5	2819	Aaa/Gaa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508589	106508589	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	84	489	0	ENST00000359195.3:c.583C>A	p.Leu195Ile	p.L195I	ENST00000359195	NM_002649.2	195	Ctc/Atc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521466	8521466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	186	839	0	ENST00000356435.5:c.772G>A	p.Val258Met	p.V258M	ENST00000356435		258	Gtg/Atg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39911616	39911616	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	181	405	0	ENST00000378444.4:c.5014A>G	p.Lys1672Glu	p.K1672E	ENST00000378444	NM_001123385.1	1672	Aaa/Gaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0023678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	112	791	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	14	463	0	ENST00000263967.3:c.1034A>T	p.Asn345Ile	p.N345I	ENST00000263967	NM_006218.2	345	aAt/aTt																																																																															
TEK	7010	MSKCC	GRCh37	9	27192600	27192600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	45	685	3	ENST00000380036.4:c.1603C>T	p.Arg535Cys	p.R535C	ENST00000380036	NM_000459.3	535	Cgc/Tgc																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120465283	120465283	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	47	522	0	ENST00000256646.2:c.4978T>A	p.Ser1660Thr	p.S1660T	ENST00000256646	NM_024408.3	1660	Tca/Aca																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	507	883	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0023682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	587	917	1	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249635	110249635	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	732	1129	0	ENST00000374672.4:c.1040A>G	p.Asn347Ser	p.N347S	ENST00000374672	NM_004235.4	347	aAt/aGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023151	27023179	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	-			P-0023682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	385	104	0	ENST00000324856.7:c.267_295del	p.Ser90ProfsTer11	p.S90Pfs*11	ENST00000324856	NM_006015.4	86	gGCGGAGCCGGCAGCGGCGGCGGGCCCGGC/g																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922802	44922802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	375	274	0	ENST00000377967.4:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000377967	NM_021140.2	555	Cag/Tag																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175996744	175996769	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGAATTTAACACAGCACACATTA	GGCTGAATTTAACACAGCACACATTA	-			P-0023682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	338	622	2	ENST00000367669.3:c.1668_1693del	p.Asn557LeufsTer19	p.N557Lfs*19	ENST00000367669	NM_022457.5	556	gcTAATGTGTGCTGTGTTAAATTCAGCCcc/gccc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78831606	78831606	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	314	681	1	ENST00000306801.3:c.1415T>C	p.Ile472Thr	p.I472T	ENST00000306801	NM_020761.2	472	aTc/aCc																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815709	32815709	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	324	805	0	ENST00000354258.4:c.1907A>G	p.Tyr636Cys	p.Y636C	ENST00000354258	NM_000593.5	636	tAc/tGc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0023704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	203	683	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0023704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	127	449	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971192	21971192	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	25	518	0	ENST00000304494.5:c.166A>G	p.Ser56Gly	p.S56G	ENST00000304494	NM_000077.4	56	Agc/Ggc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	207	667	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252949	36252951	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0023705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	183	512	0	ENST00000300305.3:c.411_413del	p.Asp137del	p.D137del	ENST00000300305		137	gaTGAa/gaa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50816263	50816263	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	85	375	0	ENST00000398568.2:c.1703T>C	p.Val568Ala	p.V568A	ENST00000398568	NM_001042412.1	568	gTa/gCa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112412	115112412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	140	659	0	ENST00000257566.3:c.1328C>T	p.Ser443Leu	p.S443L	ENST00000257566	NM_016569.3	443	tCg/tTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	204	526	0	ENST00000346208.3:c.1300dup	p.His434ProfsTer73	p.H434Pfs*73	ENST00000346208		433	cac/caCc																																																																															
MDM4	4194	MSKCC	GRCh37	1	204507407	204507407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	664	177	0	ENST00000367182.3:c.482C>T	p.Ser161Leu	p.S161L	ENST00000367182	NM_001278516.1	161	tCa/tTa																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919762	50919762	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	210	698	2	ENST00000440232.2:c.2930G>T	p.Gly977Val	p.G977V	ENST00000440232	NM_002691.3	977	gGc/gTc																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46583407	46583407	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0023452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	159	596	0	ENST00000263734.3:c.335C>G	p.Ser112Ter	p.S112*	ENST00000263734	NM_001430.4	112	tCa/tGa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729796	41729796	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	22	473	0	ENST00000242208.4:c.733G>C	p.Glu245Gln	p.E245Q	ENST00000242208	NM_002192.2	245	Gag/Cag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737811	145737811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1157	273	778	0	ENST00000428558.2:c.3019C>T	p.Leu1007Phe	p.L1007F	ENST00000428558	NM_004260.3	1007	Ctc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	420	735	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40710553	40710553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	298	677	0	ENST00000373198.4:c.4298G>A	p.Arg1433His	p.R1433H	ENST00000373198	NM_133170.3	1433	cGt/cAt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155654	56155654	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746479827		P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1315	237	434	0	ENST00000399503.3:c.746G>A	p.Arg249His	p.R249H	ENST00000399503	NM_005921.1	249	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106064	27106064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	134	439	1	ENST00000324856.7:c.5675C>T	p.Thr1892Ile	p.T1892I	ENST00000324856	NM_006015.4	1892	aCa/aTa																																																																															
WT1	7490	MSKCC	GRCh37	11	32450053	32450053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	166	476	0	ENST00000332351.3:c.759G>T	p.Gln253His	p.Q253H	ENST00000332351	NM_024426.4	253	caG/caT																																																																															
WT1	7490	MSKCC	GRCh37	11	32456701	32456701	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	257	567	2	ENST00000332351.3:c.191C>A	p.Ser64Tyr	p.S64Y	ENST00000332351	NM_024426.4	64	tCt/tAt																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200852	67200852	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	306	599	0	ENST00000312629.5:c.840G>C	p.Lys280Asn	p.K280N	ENST00000312629	NM_003952.2	280	aaG/aaC																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344318	118344318	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	91	317	0	ENST00000534358.1:c.2444G>C	p.Arg815Thr	p.R815T	ENST00000534358	NM_005933.3	815	aGa/aCa																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589772	28589772	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	288	661	0	ENST00000241453.7:c.2608G>T	p.Asp870Tyr	p.D870Y	ENST00000241453	NM_004119.2	870	Gat/Tat																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807337	3807337	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	255	453	0	ENST00000262367.5:c.3650A>G	p.Gln1217Arg	p.Q1217R	ENST00000262367	NM_004380.2	1217	cAg/cGg																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348870	11348870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	61	245	0	ENST00000332029.2:c.466G>T	p.Ala156Ser	p.A156S	ENST00000332029	NM_003745.1	156	Gcg/Tcg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347163	89347163	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	379	518	0	ENST00000301030.4:c.5787C>A	p.Ser1929Arg	p.S1929R	ENST00000301030	NM_001256183.1	1929	agC/agA																																																																															
NF1	4763	MSKCC	GRCh37	17	29664591	29664591	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	124	474	1	ENST00000358273.4:c.6633G>T	p.Glu2211Asp	p.E2211D	ENST00000358273	NM_001042492.2	2211	gaG/gaT																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96919736	96919736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	260	525	2	ENST00000258439.3:c.527G>A	p.Ser176Asn	p.S176N	ENST00000258439	NM_001193304.2	176	aGc/aAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730847	40730847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	434	731	0	ENST00000373198.4:c.3688G>A	p.Val1230Met	p.V1230M	ENST00000373198	NM_133170.3	1230	Gtg/Atg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827946	40827946	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	363	576	0	ENST00000373198.4:c.2482A>T	p.Thr828Ser	p.T828S	ENST00000373198	NM_133170.3	828	Acc/Tcc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670713	134670713	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	277	602	0	ENST00000398015.3:c.624G>T	p.Glu208Asp	p.E208D	ENST00000398015	NM_004441.4	208	gaG/gaT																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134977960	134977960	+	stop_lost	Nonstop_Mutation	SNP	T	T	A			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	273	550	0	ENST00000398015.3:c.2953T>A	p.Ter985ArgextTer22	p.*985Rext*22	ENST00000398015	NM_004441.4	985	Tga/Aga																																																																															
TET2	54790	MSKCC	GRCh37	4	106197519	106197519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	188	358	0	ENST00000380013.4:c.5852G>A	p.Arg1951Gln	p.R1951Q	ENST00000380013	NM_001127208.2	1951	cGg/cAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542174	187542174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	226	465	1	ENST00000441802.2:c.5566C>T	p.Arg1856Cys	p.R1856C	ENST00000441802	NM_005245.3	1856	Cgt/Tgt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542653	187542653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	234	522	0	ENST00000441802.2:c.5087C>T	p.Ser1696Leu	p.S1696L	ENST00000441802	NM_005245.3	1696	tCa/tTa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526193	31526193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2227	154	649	2	ENST00000344624.3:c.847C>T	p.Arg283Trp	p.R283W	ENST00000344624		283	Cgg/Tgg																																																																															
RASA1	5921	MSKCC	GRCh37	5	86642543	86642543	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	332	559	0	ENST00000274376.6:c.1102+2T>A		p.X368_splice	ENST00000274376	NM_002890.2	368																																																																																
HGF	3082	MSKCC	GRCh37	7	81374315	81374315	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	67	318	0	ENST00000222390.5:c.746+1del		p.X249_splice	ENST00000222390	NM_000601.4	249																																																																																
FGFR1	2260	MSKCC	GRCh37	8	38282059	38282059	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	579	885	0	ENST00000425967.3:c.997C>G	p.Pro333Ala	p.P333A	ENST00000425967	NM_001174067.1	333	Cca/Gca																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101910062	101910062	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	130	258	0	ENST00000374994.4:c.1382G>T	p.Cys461Phe	p.C461F	ENST00000374994	NM_004612.2	461	tGt/tTt																																																																															
ARAF	369	MSKCC	GRCh37	X	47422655	47422655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	154	605	0	ENST00000377045.4:c.127G>T	p.Asp43Tyr	p.D43Y	ENST00000377045	NM_001654.4	43	Gac/Tac																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53230889	53230889	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	153	666	0	ENST00000375401.3:c.1904G>T	p.Arg635Leu	p.R635L	ENST00000375401	NM_004187.3	635	cGg/cTg																																																																															
AR	367	MSKCC	GRCh37	X	66863181	66863181	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	126	577	1	ENST00000374690.3:c.1700C>A	p.Ala567Asp	p.A567D	ENST00000374690	NM_000044.3	567	gCt/gAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70361144	70361144	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	137	705	0	ENST00000374080.3:c.6332A>C	p.Gln2111Pro	p.Q2111P	ENST00000374080		2111	cAg/cCg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197025	123197025	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	111	605	0	ENST00000218089.9:c.1791G>T	p.Leu597Phe	p.L597F	ENST00000218089	NM_001042749.1	597	ttG/ttT																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0023572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	16	486	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579541	7579541	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	114	910	3	ENST00000269305.4:c.146A>T	p.Asp49Val	p.D49V	ENST00000269305	NM_001126112.2	49	gAt/gTt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347142	89347142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	29	613	4	ENST00000301030.4:c.5808G>T	p.Glu1936Asp	p.E1936D	ENST00000301030	NM_001256183.1	1936	gaG/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7579542	7579543	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	110	898	0	ENST00000269305.4:c.144dup	p.Asp49ArgfsTer3	p.D49Rfs*3	ENST00000269305	NM_001126112.2	48	-/C																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618392	37618392	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	23	454	0	ENST00000447079.4:c.68C>A	p.Pro23Gln	p.P23Q	ENST00000447079	NM_015083.1	23	cCg/cAg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630524	187630524	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0023572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	44	933	0	ENST00000441802.2:c.458C>G	p.Ser153Ter	p.S153*	ENST00000441802	NM_005245.3	153	tCa/tGa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86628396	86628396	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	54	473	0	ENST00000274376.6:c.766del	p.Tyr256ThrfsTer23	p.Y256Tfs*23	ENST00000274376	NM_002890.2	255	taT/ta																																																																															
ATRX	546	MSKCC	GRCh37	X	76888847	76888847	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	76	376	0	ENST00000373344.5:c.4982G>T	p.Arg1661Leu	p.R1661L	ENST00000373344	NM_000489.3	1661	cGt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	82	740	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742144	145742144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	80	605	0	ENST00000428558.2:c.359G>A	p.Gly120Glu	p.G120E	ENST00000428558	NM_004260.3	120	gGa/gAa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243828133	243828134	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0023633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	52	689	1	ENST00000263826.5:c.224_225delinsTT	p.Arg75Ile	p.R75I	ENST00000263826	NM_005465.4	75	aGA/aTT																																																																															
POLE	5426	MSKCC	GRCh37	12	133226276	133226276	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	162	752	0	ENST00000320574.5:c.3782T>G	p.Leu1261Arg	p.L1261R	ENST00000320574	NM_006231.2	1261	cTg/cGg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41226387	41226387	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28897691		P-0023633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	90	758	2	ENST00000357654.3:c.4636G>A	p.Asp1546Asn	p.D1546N	ENST00000357654	NM_007294.3	1546	Gat/Aat																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441991	52442005	+	inframe_deletion	In_Frame_Del	DEL	TGGTGAAGTCCTTCA	TGGTGAAGTCCTTCA	-			P-0023633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	110	566	0	ENST00000460680.1:c.344_358del	p.Met115_Thr119del	p.M115_T119del	ENST00000460680	NM_004656.3	115	aTGAAGGACTTCACCAag/aag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348566	89348568	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0023641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	73	1060	2	ENST00000301030.4:c.4382_4384delAGA	p.Lys1461del	p.K1461del	ENST00000301030	NM_001256183.1	1461	aAGAga/aga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927985	+	inframe_deletion	In_Frame_Del	DEL	TGTCCA	TGTCCA	-			P-0023641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	106	335	0	ENST00000263967.3:c.1259_1264del	p.Cys420_Pro421del	p.C420_P421del	ENST00000263967	NM_006218.2	420	TGTCCA/-																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2193750	2193750	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	189	691	0	ENST00000398665.3:c.556G>C	p.Glu186Gln	p.E186Q	ENST00000398665	NM_032482.2	186	Gag/Cag																																																																															
RYBP	23429	MSKCC	GRCh37	3	72428494	72428496	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0023641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	608	82	0	ENST00000477973.2:c.506_508del	p.Lys170del	p.K170del	ENST00000477973	NM_012234.5	170	AAG/-																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267360	198267360	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	16	631	0	ENST00000335508.6:c.1997A>C	p.Lys666Thr	p.K666T	ENST00000335508	NM_012433.2	666	aAg/aCg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	250	642	1	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578386	7578386	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	644	561	0	ENST00000269305.4:c.544del	p.Cys182AlafsTer65	p.C182Afs*65	ENST00000269305	NM_001126112.2	182	Tgc/gc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18956915	18956915	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	171	445	0	ENST00000262803.5:c.358A>T	p.Ile120Leu	p.I120L	ENST00000262803	NM_002911.3	120	Ata/Tta																																																																															
KIT	3815	MSKCC	GRCh37	4	55564528	55564528	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	159	531	0	ENST00000288135.5:c.416C>A	p.Thr139Lys	p.T139K	ENST00000288135	NM_000222.2	139	aCa/aAa																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934103	39934103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	57	574	0	ENST00000378444.4:c.496C>G	p.Leu166Val	p.L166V	ENST00000378444	NM_001123385.1	166	Ctg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578527	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	423	992	0	ENST00000269305.4:c.403dupT	p.Cys135LeufsTer14	p.C135Lfs*14	ENST00000269305	NM_001126112.2	135	tgc/tTgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720854	89720872	+	frameshift_variant	Frame_Shift_Del	DEL	ATACTTTTCTCCAAATTTT	ATACTTTTCTCCAAATTTT	-			P-0022282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	58	474	0	ENST00000371953.3:c.1006_1024del	p.Tyr336ArgfsTer2	p.Y336Rfs*2	ENST00000371953	NM_000314.4	335	cgATACTTTTCTCCAAATTTT/cg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619344	1619344	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	310	781	0	ENST00000344749.5:c.1297A>G	p.Met433Val	p.M433V	ENST00000344749	NM_001136139.2	433	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0022976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	344	756	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007330	143007330	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	247	537	0	ENST00000262992.4:c.2454A>C	p.Arg818Ser	p.R818S	ENST00000262992	NM_001101669.1	818	agA/agC																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	69	651	0				ENST00000310581	NM_198253.2																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	62	521	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	124	1030	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	408	1010	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	82	689	3	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216714	7216714	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	61	647	0	ENST00000380728.2:c.709C>T	p.Gln237Ter	p.Q237*	ENST00000380728		237	Cag/Tag																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216947	7216947	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	36	703	0	ENST00000380728.2:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000380728		192	Cag/Tag																																																																															
BLM	641	MSKCC	GRCh37	15	91328178	91328178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	80	622	0	ENST00000355112.3:c.2690C>T	p.Ser897Phe	p.S897F	ENST00000355112	NM_000057.2	897	tCc/tTc																																																																															
CDH1	999	MSKCC	GRCh37	16	68849565	68849565	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	99	880	2	ENST00000261769.5:c.1468G>T	p.Glu490Ter	p.E490*	ENST00000261769	NM_004360.3	490	Gaa/Taa																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599995	28599995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	97	966	0	ENST00000253063.3:c.877G>A	p.Glu293Lys	p.E293K	ENST00000253063	NM_031459.4	293	Gag/Aag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729743	162729743	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	200	809	0	ENST00000367921.3:c.829C>A	p.Arg277Ser	p.R277S	ENST00000367921	NM_006182.2	277	Cgc/Agc																																																																															
WT1	7490	MSKCC	GRCh37	11	32439151	32439151	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	104	911	2	ENST00000332351.3:c.922C>T	p.Gln308Ter	p.Q308*	ENST00000332351	NM_024426.4	308	Cag/Tag																																																																															
CDH1	999	MSKCC	GRCh37	16	68772207	68772207	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	97	976	0	ENST00000261769.5:c.56C>G	p.Ser19Cys	p.S19C	ENST00000261769	NM_004360.3	19	tCt/tGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923828	72923828	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	63	776	0	ENST00000268489.5:c.3250G>C	p.Glu1084Gln	p.E1084Q	ENST00000268489	NM_006885.3	1084	Gag/Cag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351364	89351364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	130	1108	0	ENST00000301030.4:c.1586C>T	p.Ser529Phe	p.S529F	ENST00000301030	NM_001256183.1	529	tCt/tTt																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216439	7216439	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	105	867	0	ENST00000380728.2:c.809C>G	p.Ser270Cys	p.S270C	ENST00000380728		270	tCt/tGt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17947996	17947996	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	123	1064	0	ENST00000458235.1:c.1728G>T	p.Met576Ile	p.M576I	ENST00000458235	NM_000215.3	576	atG/atT																																																																															
CIC	23152	MSKCC	GRCh37	19	42791385	42791385	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	117	893	0	ENST00000575354.2:c.445G>C	p.Asp149His	p.D149H	ENST00000575354	NM_015125.3	149	Gat/Cat																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719694	190719694	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs140854388		P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	54	437	0	ENST00000441310.2:c.1696C>G	p.Leu566Val	p.L566V	ENST00000441310	NM_000534.4	566	Ctt/Gtt																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73114806	73114806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7	15	11	0	ENST00000356692.5:c.1187C>T	p.Ser396Leu	p.S396L	ENST00000356692		396	tCa/tTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542840	187542840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	54	714	0	ENST00000441802.2:c.4900G>A	p.Asp1634Asn	p.D1634N	ENST00000441802	NM_005245.3	1634	Gat/Aat																																																																															
MET	4233	MSKCC	GRCh37	7	116339418	116339418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	76	540	0	ENST00000397752.3:c.280G>A	p.Asp94Asn	p.D94N	ENST00000397752	NM_000245.2	94	Gat/Aat																																																																															
KLF4	9314	MSKCC	GRCh37	9	110248153	110248153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	62	663	0	ENST00000374672.4:c.1319C>T	p.Ser440Leu	p.S440L	ENST00000374672	NM_004235.4	440	tCa/tTa																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841195	15841206	+	inframe_deletion	In_Frame_Del	DEL	AGGGACCGCAGC	AGGGACCGCAGC	-			P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	32	718	0	ENST00000307771.7:c.1291_1302del	p.Asp432_Arg435del	p.D432_R435del	ENST00000307771	NM_005089.3	427	AGGGACCGCAGC/-																																																																															
STAG2	10735	MSKCC	GRCh37	X	123227935	123227935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	72	676	0	ENST00000218089.9:c.3646G>A	p.Glu1216Lys	p.E1216K	ENST00000218089	NM_001042749.1	1216	Gaa/Aaa																																																																															
KIT	3815	MSKCC	GRCh37	4	55593464	55593464	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs3822214		P-0023561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	9	549	0	ENST00000288135.5:c.1621A>C	p.Met541Leu	p.M541L	ENST00000288135	NM_000222.2	541	Atg/Ctg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176176063	176176064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	61	897	0	ENST00000367669.3:c.51dup	p.Ser18ValfsTer60	p.S18Vfs*60	ENST00000367669	NM_022457.5	17	-/G																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900099	151900099	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	52	787	0	ENST00000262189.6:c.4012del	p.Thr1338LeufsTer7	p.T1338Lfs*7	ENST00000262189	NM_170606.2	1338	Act/ct																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538923	23538923	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	31	791	1	ENST00000380871.4:c.516C>A	p.Phe172Leu	p.F172L	ENST00000380871	NM_006167.3	172	ttC/ttA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0023574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	530	620	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TSC1	7248	MSKCC	GRCh37	9	135779103	135779103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	97	524	0	ENST00000298552.3:c.2143C>T	p.Arg715Trp	p.R715W	ENST00000298552	NM_001162426.1	715	Cgg/Tgg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797198	45797198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	99	738	0	ENST00000372115.3:c.1175C>T	p.Ser392Phe	p.S392F	ENST00000372115	NM_001048171.1	392	tCc/tTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9923347	9923347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	86	670	1	ENST00000330684.3:c.1940C>A	p.Ala647Asp	p.A647D	ENST00000330684	NM_001134407.1	647	gCc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577554	7577559	+	inframe_deletion	In_Frame_Del	DEL	TGCAGG	TGCAGG	-			P-0023574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	220	700	1	ENST00000269305.4:c.722_727del	p.Ser241_Met243delinsLeu	p.S241_M243delinsL	ENST00000269305	NM_001126112.2	241	tCCTGCAtg/ttg																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197079	26197079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	89	509	1	ENST00000356476.2:c.400G>A	p.Glu134Lys	p.E134K	ENST00000356476		134	Gag/Aag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500900	8500900	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	82	646	0	ENST00000356435.5:c.1982A>T	p.Glu661Val	p.E661V	ENST00000356435		661	gAg/gTg																																																																															
MED12	9968	MSKCC	GRCh37	X	70344212	70344212	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	41	394	0	ENST00000374080.3:c.1948G>T	p.Glu650Ter	p.E650*	ENST00000374080		650	Gaa/Taa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0023575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	29	737	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																															
APC	324	MSKCC	GRCh37	5	112170683	112170683	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	19	584	1	ENST00000257430.4:c.1779G>A	p.Trp593Ter	p.W593*	ENST00000257430	NM_000038.5	593	tgG/tgA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023459	27023459	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	27	796	0	ENST00000324856.7:c.565G>T	p.Gly189Cys	p.G189C	ENST00000324856	NM_006015.4	189	Ggc/Tgc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	402162	402162	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	32	920	1	ENST00000399788.2:c.4629C>A	p.Asp1543Glu	p.D1543E	ENST00000399788	NM_001042603.1	1543	gaC/gaA																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231337	46231337	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	28	655	0	ENST00000334344.6:c.1177G>T	p.Glu393Ter	p.E393*	ENST00000334344	NM_152641.2	393	Gaa/Taa																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651404	52651404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	43	811	0	ENST00000394830.3:c.1692G>T	p.Glu564Asp	p.E564D	ENST00000394830	NM_018313.4	564	gaG/gaT																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564101	139564101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	18	1001	1	ENST00000308874.7:c.241C>T	p.Pro81Ser	p.P81S	ENST00000308874		81	Cct/Tct																																																																															
AR	367	MSKCC	GRCh37	X	66765907	66765908	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0023575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	11	508	0	ENST00000374690.3:c.919_920delinsAA	p.Ala307Asn	p.A307N	ENST00000374690	NM_000044.3	307	GCt/AAt																																																																															
RECQL	5965	MSKCC	GRCh37	12	21624581	21624581	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	88	615	0	ENST00000421138.2:c.1448C>T	p.Ala483Val	p.A483V	ENST00000421138		483	gCa/gTa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41730019	41730019	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	190	794	0	ENST00000242208.4:c.510del	p.Val171SerfsTer27	p.V171Sfs*27	ENST00000242208	NM_002192.2	170	aaA/aa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971167	21971167	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	163	640	0	ENST00000304494.5:c.191T>G	p.Leu64Arg	p.L64R	ENST00000304494	NM_000077.4	64	cTg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	176	708	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	472142	472142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	166	568	0	ENST00000399788.2:c.659G>A	p.Arg220His	p.R220H	ENST00000399788	NM_001042603.1	220	cGt/cAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5211707	5211707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145108936		P-0023511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	180	819	1	ENST00000357368.4:c.5128C>T	p.Arg1710Cys	p.R1710C	ENST00000357368	NM_002850.3	1710	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175577	112175577	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	200	401	0	ENST00000257430.4:c.4288del	p.Thr1430ProfsTer43	p.T1430Pfs*43	ENST00000257430	NM_000038.5	1429	cAa/ca																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0023516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	468	835	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
APC	324	MSKCC	GRCh37	5	112175288	112175288	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	149	291	0	ENST00000257430.4:c.3997A>T	p.Lys1333Ter	p.K1333*	ENST00000257430	NM_000038.5	1333	Aaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112174670	112174670	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	138	503	0	ENST00000257430.4:c.3379C>T	p.Gln1127Ter	p.Q1127*	ENST00000257430	NM_000038.5	1127	Cag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37872145	37872145	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142456637		P-0023516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7580	1886	837	1	ENST00000269571.5:c.1466C>T	p.Pro489Leu	p.P489L	ENST00000269571		489	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577062	7577062	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	20	884	1	ENST00000269305.4:c.876A>T	p.Lys292Asn	p.K292N	ENST00000269305	NM_001126112.2	292	aaA/aaT																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37875531	37876056	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAAAAGAATATGGGTCCAGATCCATATGGATCCTAGATCCAGATCACGGTGTTAGAACATGGAAAAACATTGCAAGATTCTGCTAAGTGAAAAAAGCATTTGCAAACAGTATGTACAGTCTATATTCAGAGGAGGAACTGCTGGGTCATAGATGATATTTCATAGGTATTGCCAAACCGTTCTCTGGAGAAGTGGTATGGGTTTACCCTGGGATTCTTCTATGGAGGGAATAGTTGAGCTCCCGGGCTTGCTCTTCTGGGTGCCCCTCCCCGCTTCCTATCCACCACAAGGAGCTGCAGGGGAGCGGGGCATGCCGGTTCCTTGGCTGGAGAAGGAGTCTCCTTGTGAGGTGGTAGAAGGAGCACTGACGGCCTTGAGCCCAGTTTCTGCCTTTGTCAAATGGGGATAATGACCCAGCCACACCCCTCCCAGGGTTGTTGTGAGGCTGGAAAGGTGGTTCCCAAGAGGGTGGTTCCCAGAATTGTTGATGAGACTGTTTCTCCTGCAGCTGTGTGGACCTGGATG	AAAAAAGAATATGGGTCCAGATCCATATGGATCCTAGATCCAGATCACGGTGTTAGAACATGGAAAAACATTGCAAGATTCTGCTAAGTGAAAAAAGCATTTGCAAACAGTATGTACAGTCTATATTCAGAGGAGGAACTGCTGGGTCATAGATGATATTTCATAGGTATTGCCAAACCGTTCTCTGGAGAAGTGGTATGGGTTTACCCTGGGATTCTTCTATGGAGGGAATAGTTGAGCTCCCGGGCTTGCTCTTCTGGGTGCCCCTCCCCGCTTCCTATCCACCACAAGGAGCTGCAGGGGAGCGGGGCATGCCGGTTCCTTGGCTGGAGAAGGAGTCTCCTTGTGAGGTGGTAGAAGGAGCACTGACGGCCTTGAGCCCAGTTTCTGCCTTTGTCAAATGGGGATAATGACCCAGCCACACCCCTCCCAGGGTTGTTGTGAGGCTGGAAAGGTGGTTCCCAAGAGGGTGGTTCCCAGAATTGTTGATGAGACTGTTTCTCCTGCAGCTGTGTGGACCTGGATG	-			P-0023516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			4891	2754	0	0	ENST00000269571.5:c.1899-508_1916del		p.X633_splice	ENST00000269571		633																																																																																
BCL2L1	598	MSKCC	GRCh37	20	30309657	30309657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1578	206	776	0	ENST00000307677.4:c.365G>A	p.Ser122Asn	p.S122N	ENST00000307677	NM_138578.1	122	aGc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0023517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	40	440	0	ENST00000269305.4:c.559+2T>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
RASA1	5921	MSKCC	GRCh37	5	86672317	86672317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	36	450	0	ENST00000274376.6:c.2119C>T	p.Arg707Cys	p.R707C	ENST00000274376	NM_002890.2	707	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	160	583	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724317	112724317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	189	592	0	ENST00000369452.4:c.201del	p.Val68LeufsTer23	p.V68Lfs*23	ENST00000369452	NM_007373.3	67	tcA/tc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94194137	94194137	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	209	692	0	ENST00000323929.3:c.1291del	p.Asp431IlefsTer3	p.D431Ifs*3	ENST00000323929	NM_005591.3	431	Gat/at																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426763	121426763	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	215	730	0	ENST00000257555.6:c.454A>G	p.Thr152Ala	p.T152A	ENST00000257555		152	Act/Gct																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389320	8389320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	39	750	0	ENST00000356435.5:c.4298C>T	p.Pro1433Leu	p.P1433L	ENST00000356435		1433	cCc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0023540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	53	608	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178948160	178948160	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	20	225	0	ENST00000263967.3:c.2932G>C	p.Glu978Gln	p.E978Q	ENST00000263967	NM_006218.2	978	Gag/Cag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647926	3647927	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCTTCCGCCTCTTCCGTGGCT			P-0023540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	53	814	0	ENST00000294008.3:c.1217_1237dup	p.Glu406_Lys412dup	p.E406_K412dup	ENST00000294008	NM_032444.2	406	gtg/gAGCCACGGAAGAGGCGGAAGGtg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858024	9858024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	43	593	0	ENST00000330684.3:c.3377C>T	p.Pro1126Leu	p.P1126L	ENST00000330684	NM_001134407.1	1126	cCt/cTt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942080	17942080	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	46	694	0	ENST00000458235.1:c.2935G>C	p.Asp979His	p.D979H	ENST00000458235	NM_000215.3	979	Gac/Cac																																																																															
ATR	545	MSKCC	GRCh37	3	142185188	142185188	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	62	496	0	ENST00000350721.4:c.6875A>G	p.Tyr2292Cys	p.Y2292C	ENST00000350721	NM_001184.3	2292	tAt/tGt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170312	32170312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	66	832	0	ENST00000375023.3:c.3296G>T	p.Gly1099Val	p.G1099V	ENST00000375023	NM_004557.3	1099	gGa/gTa																																																																															
SMO	6608	MSKCC	GRCh37	7	128845618	128845618	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	16	354	0	ENST00000249373.3:c.915del	p.Glu305AspfsTer21	p.E305Dfs*21	ENST00000249373	NM_005631.4	305	gaG/ga																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209256	98209256	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	66	703	0	ENST00000331920.6:c.4282del	p.Glu1428LysfsTer24	p.E1428Kfs*24	ENST00000331920	NM_000264.3	1428	Gaa/aa																																																																															
ATRX	546	MSKCC	GRCh37	X	76939615	76939615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	62	620	0	ENST00000373344.5:c.1133C>A	p.Thr378Lys	p.T378K	ENST00000373344	NM_000489.3	378	aCa/aAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0023546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	360	832	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	95	390	0	ENST00000349496.5:c.95A>C	p.Asp32Ala	p.D32A	ENST00000349496	NM_001904.3	32	gAc/gCc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106519962	106519962	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0023546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	54	243	1	ENST00000359195.3:c.2392-2A>T		p.X798_splice	ENST00000359195	NM_002649.2	798																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151856079	151856079	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	118	579	0	ENST00000262189.6:c.11539A>G	p.Lys3847Glu	p.K3847E	ENST00000262189	NM_170606.2	3847	Aag/Gag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0023614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	55	676	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145430	58145430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	31	538	0	ENST00000257904.6:c.71G>T	p.Arg24Leu	p.R24L	ENST00000257904	NM_000075.3	24	cGt/cTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0023617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	118	632	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0023619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	174	669	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115435	115115437	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0023619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	205	858	0	ENST00000257566.3:c.889_891del	p.Asn297del	p.N297del	ENST00000257566	NM_016569.3	297	AAC/-																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121431404	121431404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	127	809	0	ENST00000257555.6:c.608G>A	p.Arg203His	p.R203H	ENST00000257555		203	cGt/cAt																																																																															
EP300	2033	MSKCC	GRCh37	22	41574406	41574406	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	159	663	0	ENST00000263253.7:c.6691A>G	p.Met2231Val	p.M2231V	ENST00000263253	NM_001429.3	2231	Atg/Gtg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177996	56177996	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	133	562	0	ENST00000399503.3:c.2972del	p.Pro991HisfsTer91	p.P991Hfs*91	ENST00000399503	NM_005921.1	990	aCc/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0023621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	177	792	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489543	40489543	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	174	777	0	ENST00000264657.5:c.707C>G	p.Thr236Arg	p.T236R	ENST00000264657	NM_139276.2	236	aCg/aGg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28901656	28901656	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	119	578	0	ENST00000282397.4:c.2739A>C	p.Lys913Asn	p.K913N	ENST00000282397	NM_002019.4	913	aaA/aaC																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489529	40489529	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	170	770	0	ENST00000264657.5:c.721del	p.Ala241LeufsTer20	p.A241Lfs*20	ENST00000264657	NM_139276.2	241	Gct/ct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0023622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	126	822	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778353	3778353	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	52	743	0	ENST00000262367.5:c.6695A>T	p.Gln2232Leu	p.Q2232L	ENST00000262367	NM_004380.2	2232	cAg/cTg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243863	41243863	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	96	746	0	ENST00000357654.3:c.3685T>A	p.Leu1229Met	p.L1229M	ENST00000357654	NM_007294.3	1229	Ttg/Atg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944615	40944615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	31	482	0	ENST00000373198.4:c.1887G>T	p.Lys629Asn	p.K629N	ENST00000373198	NM_133170.3	629	aaG/aaT																																																																															
MSH3	4437	MSKCC	GRCh37	5	80169088	80169088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	35	520	0	ENST00000265081.6:c.3284G>T	p.Gly1095Val	p.G1095V	ENST00000265081	NM_002439.4	1095	gGa/gTa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86685340	86685340	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	11	172	0	ENST00000274376.6:c.3056A>T	p.Gln1019Leu	p.Q1019L	ENST00000274376	NM_002890.2	1019	cAg/cTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47028840	47028840	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0023622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	69	501	0	ENST00000329236.7:c.144T>A	p.Tyr48Ter	p.Y48*	ENST00000329236	NM_001204466.1	48	taT/taA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	188	731	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0023623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	240	803	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729271	41729271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	136	503	1	ENST00000242208.4:c.1258G>A	p.Val420Met	p.V420M	ENST00000242208	NM_002192.2	420	Gtg/Atg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99440126	99440126	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	239	512	1	ENST00000268035.6:c.1094G>T	p.Arg365Leu	p.R365L	ENST00000268035	NM_000875.3	365	cGa/cTa																																																																															
WT1	7490	MSKCC	GRCh37	11	32439146	32439146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	214	838	1	ENST00000332351.3:c.927G>A	p.Met309Ile	p.M309I	ENST00000332351	NM_024426.4	309	atG/atA																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15295774	15295774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	424	1073	1	ENST00000263388.2:c.2353C>T	p.Arg785Cys	p.R785C	ENST00000263388	NM_000435.2	785	Cgc/Tgc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266064	41266656	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	GCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGT	GCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGT	-			P-0023623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	124	461	0	ENST00000349496.5:c.63_455del		p.X21_splice	ENST00000349496	NM_001904.3	21	GCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGT/-																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0023624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	87	668	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	107	943	1	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31495463	31495463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	237	680	1	ENST00000344624.3:c.1685G>A	p.Arg562His	p.R562H	ENST00000344624		562	cGt/cAt																																																																															
BTK	695	MSKCC	GRCh37	X	100611875	100611875	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1179	110	997	0	ENST00000308731.7:c.1246G>T	p.Val416Leu	p.V416L	ENST00000308731	NM_000061.2	416	Gtg/Ttg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519922		P-0009935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			905	126	814	0	ENST00000397062.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000397062	NM_006164.4	79	Gag/Aag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47144907	47144907	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			634	59	530	0	ENST00000409792.3:c.4846G>C	p.Asp1616His	p.D1616H	ENST00000409792	NM_014159.6	1616	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			763	77	813	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258428	16258428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			776	69	651	1	ENST00000375759.3:c.5693G>A	p.Arg1898Gln	p.R1898Q	ENST00000375759	NM_015001.2	1898	cGa/cAa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307472	118307472	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			539	42	436	0	ENST00000534358.1:c.245C>G	p.Ser82Ter	p.S82*	ENST00000534358	NM_005933.3	82	tCa/tGa																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134231	41134231	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			533	35	451	0	ENST00000379561.5:c.1397T>G	p.Leu466Arg	p.L466R	ENST00000379561	NM_002015.3	466	cTg/cGg																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2093599	2093599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			934	113	804	0	ENST00000219066.1:c.678G>T	p.Met226Ile	p.M226I	ENST00000219066	NM_002528.5	226	atG/atT																																																																															
CDH1	999	MSKCC	GRCh37	16	68772254	68772254	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			779	88	719	1	ENST00000261769.5:c.103G>T	p.Glu35Ter	p.E35*	ENST00000261769	NM_004360.3	35	Gag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748605	40748605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	51	522	0	ENST00000373198.4:c.2911C>T	p.His971Tyr	p.H971Y	ENST00000373198	NM_133170.3	971	Cat/Tat																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141054	55141054	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			543	42	442	0	ENST00000257290.5:c.1700C>G	p.Pro567Arg	p.P567R	ENST00000257290	NM_006206.4	567	cCa/cGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			867	397	839	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044965	47044966	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0022290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			831	128	1093	2	ENST00000329236.7:c.2057_2058delinsAT	p.Cys686Tyr	p.C686Y	ENST00000329236	NM_001204466.1	686	tGC/tAT																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662631	227662631	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs201110062		P-0022290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			614	52	719	0	ENST00000305123.5:c.824A>C	p.Asn275Thr	p.N275T	ENST00000305123	NM_005544.2	275	aAc/aCc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692790	89692790	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	190	577	0	ENST00000371953.3:c.274G>C	p.Asp92His	p.D92H	ENST00000371953	NM_000314.4	92	Gac/Cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	249	796	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651336	52651336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	48	896	1	ENST00000394830.3:c.1760T>C	p.Ile587Thr	p.I587T	ENST00000394830	NM_018313.4	587	aTa/aCa																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152860097	152860097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201043377		P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	341	457	0	ENST00000406277.2:c.331C>T	p.Arg111Cys	p.R111C	ENST00000406277	NM_152274.4	111	Cgc/Tgc																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78432432	78432432	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	95	599	0	ENST00000370768.2:c.419G>T	p.Ser140Ile	p.S140I	ENST00000370768	NM_003902.3	140	aGt/aTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89725095	89725095	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	54	171	0	ENST00000371953.3:c.1078A>T	p.Ser360Cys	p.S360C	ENST00000371953	NM_000314.4	360	Agc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49441836	49441836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	152	762	0	ENST00000301067.7:c.4148G>A	p.Cys1383Tyr	p.C1383Y	ENST00000301067	NM_003482.3	1383	tGt/tAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443512	49443512	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	68	732	0	ENST00000301067.7:c.3859G>T	p.Glu1287Ter	p.E1287*	ENST00000301067	NM_003482.3	1287	Gag/Tag																																																																															
POLE	5426	MSKCC	GRCh37	12	133237701	133237701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	85	881	0	ENST00000320574.5:c.2914G>A	p.Glu972Lys	p.E972K	ENST00000320574	NM_006231.2	972	Gag/Aag																																																																															
DIS3	22894	MSKCC	GRCh37	13	73345073	73345073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	83	669	0	ENST00000377767.4:c.1724C>T	p.Thr575Met	p.T575M	ENST00000377767	NM_014953.3	575	aCg/aTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562749	95562749	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	79	595	0	ENST00000343455.3:c.4508A>G	p.Tyr1503Cys	p.Y1503C	ENST00000343455	NM_177438.2	1503	tAc/tGc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943765	9943765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	207	670	0	ENST00000330684.3:c.1176G>T	p.Arg392Ser	p.R392S	ENST00000330684	NM_001134407.1	392	agG/agT																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308401	30308401	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1244	275	916	0	ENST00000262643.3:c.415C>G	p.Leu139Val	p.L139V	ENST00000262643	NM_001238.2	139	Ctt/Gtt																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082895	16082895	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	36	308	0	ENST00000281043.3:c.709C>A	p.Pro237Thr	p.P237T	ENST00000281043	NM_005378.4	237	Ccg/Acg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719573	61719575	+	inframe_deletion	In_Frame_Del	DEL	TTA	TTA	-			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	94	872	0	ENST00000401558.2:c.1608_1610del	p.Asn536del	p.N536del	ENST00000401558	NM_003400.3	536	aaTAAa/aaa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99160436	99160436	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	75	749	0	ENST00000074304.5:c.915C>G	p.Tyr305Ter	p.Y305*	ENST00000074304	NM_001134224.1	305	taC/taG																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138461552	138461552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	177	792	1	ENST00000289153.2:c.469G>A	p.Glu157Lys	p.E157K	ENST00000289153	NM_006219.2	157	Gag/Aag																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149374921	149374921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	315	917	4	ENST00000360632.3:c.173C>T	p.Ser58Leu	p.S58L	ENST00000360632	NM_015472.4	58	tCg/tTg																																																																															
KDR	3791	MSKCC	GRCh37	4	55958804	55958804	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	61	884	0	ENST00000263923.4:c.3049G>T	p.Glu1017Ter	p.E1017*	ENST00000263923	NM_002253.2	1017	Gag/Tag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295245	1295245	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	46	667	0				ENST00000310581	NM_198253.2																																																																																	
CARD11	84433	MSKCC	GRCh37	7	2949746	2949746	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	90	986	0	ENST00000396946.4:c.3198G>C	p.Lys1066Asn	p.K1066N	ENST00000396946	NM_032415.4	1066	aaG/aaC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55266446	55266446	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	68	778	0	ENST00000275493.2:c.2738A>T	p.Lys913Met	p.K913M	ENST00000275493	NM_005228.3	913	aAg/aTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900061	151900061	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	99	848	0	ENST00000262189.6:c.4050A>C	p.Lys1350Asn	p.K1350N	ENST00000262189	NM_170606.2	1350	aaA/aaC																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518531	69518531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	164	748	2	ENST00000294312.3:c.114G>T	p.Trp38Cys	p.W38C	ENST00000294312	NM_005117.2	38	tgG/tgT																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233062	69233062	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	109	417	0	ENST00000462284.1:c.927G>A	p.Trp309Ter	p.W309*	ENST00000462284	NM_002392.5	309	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0023453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	323	648	0	ENST00000269305.4:c.559+2T>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
HIST1H3A	8350	MSKCC	GRCh37	6	26021044	26021044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	143	638	1	ENST00000357647.3:c.327C>A	p.Asn109Lys	p.N109K	ENST00000357647	NM_003529.2	109	aaC/aaA																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032057	26032057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	147	500	1	ENST00000244661.2:c.232G>A	p.Asp78Asn	p.D78N	ENST00000244661	NM_003537.3	78	Gac/Aac																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288345	33288345	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	77	583	0	ENST00000374542.5:c.1063C>G	p.Pro355Ala	p.P355A	ENST00000374542	NM_001141970.1	355	Cct/Gct																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36651925	36651925	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	174	754	0	ENST00000244741.5:c.47A>T	p.Lys16Met	p.K16M	ENST00000244741	NM_000389.4	16	aAg/aTg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0023454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	205	597	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0023454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	229	699	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092833	27092833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	109	754	0	ENST00000324856.7:c.2854G>A	p.Gly952Arg	p.G952R	ENST00000324856	NM_006015.4	952	Gga/Aga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445635	49445635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1363	312	1239	0	ENST00000301067.7:c.1831C>T	p.Pro611Ser	p.P611S	ENST00000301067	NM_003482.3	611	Cca/Tca																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061261	38061261	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	239	797	1	ENST00000250448.2:c.728A>G	p.Tyr243Cys	p.Y243C	ENST00000250448	NM_004496.3	243	tAc/tGc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367845	15367845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	141	888	0	ENST00000263377.2:c.1481C>T	p.Ser494Leu	p.S494L	ENST00000263377	NM_058243.2	494	tCg/tTg																																																																															
CASP8	841	MSKCC	GRCh37	2	202151195	202151195	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	90	445	0	ENST00000358485.4:c.1495C>A	p.Leu499Ile	p.L499I	ENST00000358485	NM_001080125.1	499	Ctc/Atc																																																																															
SRC	6714	MSKCC	GRCh37	20	36030884	36030887	+	frameshift_variant	Frame_Shift_Del	DEL	GGGA	GGGA	-			P-0023454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	244	799	0	ENST00000358208.4:c.1163_1166del	p.Arg388ProfsTer67	p.R388Pfs*67	ENST00000358208		388	cGGGAc/cc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131972816	131972816	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	136	492	0	ENST00000265335.6:c.3399G>T	p.Met1133Ile	p.M1133I	ENST00000265335		1133	atG/atT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268078	55268078	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	212	866	0	ENST00000275493.2:c.2918G>C	p.Arg973Pro	p.R973P	ENST00000275493	NM_005228.3	973	cGa/cCa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0023455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	115	976	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	94	993	1	ENST00000269305.4:c.503A>T	p.His168Leu	p.H168L	ENST00000269305	NM_001126112.2	168	cAc/cTc																																																																															
TP63	8626	MSKCC	GRCh37	3	189526145	189526145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	214	877	1	ENST00000264731.3:c.409G>A	p.Asp137Asn	p.D137N	ENST00000264731	NM_003722.4	137	Gac/Aac																																																																															
PARP1	142	MSKCC	GRCh37	1	226568887	226568887	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	49	464	0	ENST00000366794.5:c.1182G>C	p.Lys394Asn	p.K394N	ENST00000366794	NM_001618.3	394	aaG/aaC																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727510	66727510	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	25	518	0	ENST00000307102.5:c.226G>T	p.Ala76Ser	p.A76S	ENST00000307102	NM_002755.3	76	Gct/Tct																																																																															
MET	4233	MSKCC	GRCh37	7	116411872	116411900	+	splice_region_variant,intron_variant	Splice_Region	DEL	TAACAAGCTCTTTCTTTCTCTCTGTTTTA	TAACAAGCTCTTTCTTTCTCTCTGTTTTA	-			P-0023504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	237	989	1	ENST00000397752.3:c.2888-31_2888-3del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	60	618	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692886	89692886	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	128	394	0	ENST00000371953.3:c.370T>A	p.Cys124Ser	p.C124S	ENST00000371953	NM_000314.4	124	Tgt/Agt																																																																															
MDM4	4194	MSKCC	GRCh37	1	204511945	204511945	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	53	423	0	ENST00000367182.3:c.545A>G	p.Glu182Gly	p.E182G	ENST00000367182	NM_001278516.1	182	gAa/gGa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109836	115109845	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCTGGCGG	GGGCTGGCGG	-			P-0023508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	176	750	0	ENST00000257566.3:c.2033_2042del	p.Ala678GlyfsTer208	p.A678Gfs*208	ENST00000257566	NM_016569.3	678	gCCGCCAGCCCg/gg																																																																															
CDH1	999	MSKCC	GRCh37	16	68842391	68842400	+	frameshift_variant	Frame_Shift_Del	DEL	GACAGAAGAG	GACAGAAGAG	-			P-0023508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	209	673	0	ENST00000261769.5:c.452_461del	p.Arg151LysfsTer61	p.R151Kfs*61	ENST00000261769	NM_004360.3	151	aGACAGAAGAGa/aa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919199	178919199	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	102	342	0	ENST00000263967.3:c.684A>C	p.Lys228Asn	p.K228N	ENST00000263967	NM_006218.2	228	aaA/aaC																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161805	56161805	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0023508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	64	431	0	ENST00000399503.3:c.1301+1G>T		p.X434_splice	ENST00000399503	NM_005921.1	434																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56177009	56177010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0023508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	108	539	0	ENST00000399503.3:c.2282_2283dup	p.Asp762Ter	p.D762*	ENST00000399503	NM_005921.1	760	ctt/ctTAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0023526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	111	725	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																															
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	109	598	0	ENST00000288602.6:c.1781A>C	p.Asp594Ala	p.D594A	ENST00000288602	NM_004333.4	594	gAt/gCt																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0023526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	82	384	1	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0023526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	81	488	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112137024	112137024	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	90	560	0	ENST00000257430.4:c.778C>T	p.Gln260Ter	p.Q260*	ENST00000257430	NM_000038.5	260	Cag/Tag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464961	120464961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	153	771	0	ENST00000256646.2:c.5111G>A	p.Arg1704His	p.R1704H	ENST00000256646	NM_024408.3	1704	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106335	27106359	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTGTGTCCAATACCATTCGAAGC	CTGTGTGTCCAATACCATTCGAAGC	-			P-0023526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	151	741	0	ENST00000324856.7:c.5950_5974del	p.Val1984HisfsTer23	p.V1984Hfs*23	ENST00000324856	NM_006015.4	1982	gtCTGTGTGTCCAATACCATTCGAAGC/gt																																																																															
ATM	472	MSKCC	GRCh37	11	108115722	108115722	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	48	380	0	ENST00000278616.4:c.870T>G	p.His290Gln	p.H290Q	ENST00000278616	NM_000051.3	290	caT/caG																																																																															
MGA	23269	MSKCC	GRCh37	15	42052635	42052635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	142	680	3	ENST00000219905.7:c.7306C>T	p.Arg2436Cys	p.R2436C	ENST00000219905	NM_001164273.1	2436	Cgt/Tgt																																																																															
MITF	4286	MSKCC	GRCh37	3	70014170	70014170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	164	841	0	ENST00000352241.4:c.1334C>T	p.Thr445Met	p.T445M	ENST00000352241	NM_198159.2	445	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0023386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	290	689	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717609	89717609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0023386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	58	427	0	ENST00000371953.3:c.635-1G>A		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																																
MAX	4149	MSKCC	GRCh37	14	65544756	65544756	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0023386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	201	545	2	ENST00000358664.4:c.172-2A>T		p.X58_splice	ENST00000358664	NM_002382.4	58																																																																																
TSC2	7249	MSKCC	GRCh37	16	2110807	2110847	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGCTCCAGGTGGGGTGGGGGCAGGAGCTCCGGGGAGCACCG	AGCTCCAGGTGGGGTGGGGGCAGGAGCTCCGGGGAGCACCG	-			P-0023386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	51	681	0	ENST00000219476.3:c.1112_1119+33del		p.X371_splice	ENST00000219476	NM_000548.3	371																																																																																
BCL2	596	MSKCC	GRCh37	18	60985553	60985553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	130	433	0	ENST00000333681.4:c.347C>T	p.Ser116Phe	p.S116F	ENST00000333681		116	tCc/tTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11096901	11096901	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	45	885	0	ENST00000344626.4:c.392C>G	p.Ser131Cys	p.S131C	ENST00000344626	NM_003072.3	131	tCt/tGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	202	806	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	269	942	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519930		P-0023461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	229	761	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1806228	1806228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	299	935	1	ENST00000260795.2:c.1247G>A	p.Arg416His	p.R416H	ENST00000260795		416	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175148	112175148	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	197	369	0	ENST00000257430.4:c.3859delA	p.Ile1287Ter	p.I1287*	ENST00000257430	NM_000038.5	1286	gAa/ga																																																																															
MGA	23269	MSKCC	GRCh37	15	42052633	42052633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	231	730	0	ENST00000219905.7:c.7304G>A	p.Arg2435Gln	p.R2435Q	ENST00000219905	NM_001164273.1	2435	cGg/cAg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087892	27087907	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCCACCCAGTGGCC	CGGCCACCCAGTGGCC	-			P-0023461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	134	874	3	ENST00000324856.7:c.2179_2194del	p.Arg727SerfsTer10	p.R727Sfs*10	ENST00000324856	NM_006015.4	727	CGGCCACCCAGTGGCCag/ag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120229	70120230	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGCA			P-0023461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	156	1028	0	ENST00000245479.2:c.1232_1235dup	p.His413AlafsTer166	p.H413Afs*166	ENST00000245479	NM_000346.3	411	cag/cAGCAag																																																																															
STK11	6794	MSKCC	GRCh37	19	1220579	1220579	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0023461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	286	835	0	ENST00000326873.7:c.598del		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212578277	212578277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	96	936	0	ENST00000342788.4:c.980C>T	p.Thr327Ile	p.T327I	ENST00000342788	NM_005235.2	327	aCt/aTt																																																																															
BARD1	580	MSKCC	GRCh37	2	215674254	215674268	+	inframe_deletion	In_Frame_Del	DEL	TCCTCGGCTGCCGGT	TCCTCGGCTGCCGGT	-			P-0023461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	93	834	0	ENST00000260947.4:c.26_40del	p.Asn9_Arg13del	p.N9_R13del	ENST00000260947	NM_000465.2	9	aACCGGCAGCCGAGGAtc/atc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259664	89259664	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	48	356	0	ENST00000336596.2:c.808T>C	p.Cys270Arg	p.C270R	ENST00000336596	NM_005233.5	270	Tgc/Cgc																																																																															
FANCC	2176	MSKCC	GRCh37	9	98011444	98011444	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	265	853	0	ENST00000289081.3:c.130T>A	p.Phe44Ile	p.F44I	ENST00000289081	NM_000136.2	44	Ttc/Atc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89725053	89725058	+	inframe_deletion	In_Frame_Del	DEL	TACTTC	TACTTC	-			P-0023465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	37	360	0	ENST00000371953.3:c.1036_1041del	p.Tyr346_Phe347del	p.Y346_F347del	ENST00000371953	NM_000314.4	346	TACTTC/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0023466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	26	944	4	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0023466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	41	799	1	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
ETV1	2115	MSKCC	GRCh37	7	13971133	13971133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	13	291	0	ENST00000405192.2:c.796G>T	p.Asp266Tyr	p.D266Y	ENST00000405192	NM_001163147.1	266	Gac/Tac																																																																															
MTOR	2475	MSKCC	GRCh37	1	11298578	11298578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	31	698	0	ENST00000361445.4:c.1883G>T	p.Arg628Leu	p.R628L	ENST00000361445	NM_004958.3	628	cGc/cTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444412	49444412	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	25	785	3	ENST00000301067.7:c.2959G>T	p.Glu987Ter	p.E987*	ENST00000301067	NM_003482.3	987	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579699	7579700	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0023387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	25	662	2	ENST00000269305.4:c.96_96+1delinsTT		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																																
ALK	238	MSKCC	GRCh37	2	29541271	29541271	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0023387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	22	420	1	ENST00000389048.3:c.1547-1G>T		p.X516_splice	ENST00000389048	NM_004304.4	516																																																																																
KDR	3791	MSKCC	GRCh37	4	55979543	55979543	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	23	654	0	ENST00000263923.4:c.904C>A	p.Gln302Lys	p.Q302K	ENST00000263923	NM_002253.2	302	Caa/Aaa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69143587	69143587	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	17	460	0	ENST00000288368.4:c.4795C>A	p.Pro1599Thr	p.P1599T	ENST00000288368	NM_024870.2	1599	Cca/Aca																																																																															
BCOR	54880	MSKCC	GRCh37	X	39930290	39930290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	33	840	0	ENST00000378444.4:c.3174G>T	p.Gln1058His	p.Q1058H	ENST00000378444	NM_001123385.1	1058	caG/caT																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663199	227663199	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	111	764	0	ENST00000305123.5:c.256C>G	p.Leu86Val	p.L86V	ENST00000305123	NM_005544.2	86	Ctc/Gtc																																																																															
VHL	7428	MSKCC	GRCh37	3	10191501	10191501	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	170	606	0	ENST00000256474.2:c.494T>A	p.Val165Asp	p.V165D	ENST00000256474	NM_000551.3	165	gTt/gAt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1953904	1953904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	62	1023	4	ENST00000382891.5:c.2083C>T	p.Leu695Phe	p.L695F	ENST00000382891	NM_133335.3	695	Ctt/Ttt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678426	88678426	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	198	754	0	ENST00000360948.2:c.1110C>G	p.His370Gln	p.H370Q	ENST00000360948	NM_001012338.2	370	caC/caG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578189	7578189	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	265	652	1	ENST00000269305.4:c.660T>A	p.Tyr220Ter	p.Y220*	ENST00000269305	NM_001126112.2	220	taT/taA																																																																															
KDR	3791	MSKCC	GRCh37	4	55981495	55981495	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	121	588	0	ENST00000263923.4:c.442del	p.Ile148PhefsTer44	p.I148Ffs*44	ENST00000263923	NM_002253.2	148	Att/tt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0023402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	155	941	1	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																															
CBFB	865	MSKCC	GRCh37	16	67100587	67100587	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0023402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	86	558	0	ENST00000412916.2:c.285del	p.Tyr96IlefsTer2	p.Y96Ifs*2	ENST00000412916		95	gtA/gt																																																																															
CDH1	999	MSKCC	GRCh37	16	68847368	68847368	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	129	731	0	ENST00000261769.5:c.1290del	p.Asn431ThrfsTer6	p.N431Tfs*6	ENST00000261769	NM_004360.3	430	gtG/gt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879900	37879900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	131	957	0	ENST00000269571.5:c.2195G>C	p.Gly732Ala	p.G732A	ENST00000269571		732	gGc/gCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578494	7578494	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	60	778	0	ENST00000269305.4:c.436T>G	p.Trp146Gly	p.W146G	ENST00000269305	NM_001126112.2	146	Tgg/Ggg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18496263	18496263	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0023406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	30	411	0	ENST00000266497.5:c.1402del	p.Tyr468IlefsTer11	p.Y468Ifs*11	ENST00000266497		466	aaT/aa																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001930	29001930	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	29	636	1	ENST00000282397.4:c.1235C>A	p.Ser412Ter	p.S412*	ENST00000282397	NM_002019.4	412	tCa/tAa																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99442735	99442735	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	27	616	0	ENST00000268035.6:c.1132A>T	p.Met378Leu	p.M378L	ENST00000268035	NM_000875.3	378	Atg/Ttg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144823	11144823	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	29	550	0	ENST00000344626.4:c.3898G>T	p.Glu1300Ter	p.E1300*	ENST00000344626	NM_003072.3	1300	Gag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391052	89391052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	23	651	0	ENST00000336596.2:c.1118G>T	p.Cys373Phe	p.C373F	ENST00000336596	NM_005233.5	373	tGt/tTt																																																																															
ATR	545	MSKCC	GRCh37	3	142255021	142255021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	21	373	0	ENST00000350721.4:c.3748C>T	p.His1250Tyr	p.H1250Y	ENST00000350721	NM_001184.3	1250	Cat/Tat																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509979	187509979	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	26	452	0	ENST00000441802.2:c.13534T>G	p.Cys4512Gly	p.C4512G	ENST00000441802	NM_005245.3	4512	Tgt/Ggt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31401629	31401629	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	44	592	0	ENST00000344624.3:c.4035A>C	p.Glu1345Asp	p.E1345D	ENST00000344624		1345	gaA/gaC																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638153	176638153	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	35	652	1	ENST00000439151.2:c.2753A>T	p.His918Leu	p.H918L	ENST00000439151	NM_022455.4	918	cAt/cTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55260458	55260458	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0023406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	49	590	0	ENST00000275493.2:c.2626-1G>A		p.X876_splice	ENST00000275493	NM_005228.3	876																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8317915	8317915	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	16	476	0	ENST00000356435.5:c.5698G>T	p.Ala1900Ser	p.A1900S	ENST00000356435		1900	Gca/Tca																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139438556	139438556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0023406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	48	630	1	ENST00000277541.6:c.62-2A>G		p.X21_splice	ENST00000277541	NM_017617.3	21																																																																																
BCOR	54880	MSKCC	GRCh37	X	39921475	39921475	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	28	702	0	ENST00000378444.4:c.4345A>G	p.Met1449Val	p.M1449V	ENST00000378444	NM_001123385.1	1449	Atg/Gtg																																																																															
ATRX	546	MSKCC	GRCh37	X	76874439	76874439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	17	404	0	ENST00000373344.5:c.5283G>T	p.Met1761Ile	p.M1761I	ENST00000373344	NM_000489.3	1761	atG/atT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0023408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	246	645	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602340	10602340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	230	807	0	ENST00000171111.5:c.1238G>T	p.Arg413Leu	p.R413L	ENST00000171111	NM_203500.1	413	cGt/cTt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28913343	28913343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	213	762	2	ENST00000282397.4:c.2450C>A	p.Ala817Asp	p.A817D	ENST00000282397	NM_002019.4	817	gCc/gAc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858691	9858691	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	76	518	0	ENST00000330684.3:c.2710A>T	p.Ile904Phe	p.I904F	ENST00000330684	NM_001134407.1	904	Att/Ttt																																																																															
STK11	6794	MSKCC	GRCh37	19	1206992	1206993	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	201	628	0	ENST00000326873.7:c.82dup	p.Arg28ProfsTer135	p.R28Pfs*135	ENST00000326873	NM_000455.4	27	cac/caCc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72897422	72897422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	95	456	0	ENST00000325599.8:c.70G>T	p.Ala24Ser	p.A24S	ENST00000325599	NM_018130.2	24	Gcc/Tcc																																																																															
KIT	3815	MSKCC	GRCh37	4	55565934	55566106	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TGAGTGAATCGCTTCATTCTTCTCATGTTCTGTCTCTGTGGGAGATGATAAGTTTTCTCTTTCAGAAGAGTCTGTCCTGAAACTGCCTCGACTAGTGCGTCTGTCAGAGGTGGATTGTCTGGGAGAGTGTTGGGATTGCATATTTCCCCCTTTCATACCTCCACATGGAGATA	TGAGTGAATCGCTTCATTCTTCTCATGTTCTGTCTCTGTGGGAGATGATAAGTTTTCTCTTTCAGAAGAGTCTGTCCTGAAACTGCCTCGACTAGTGCGTCTGTCAGAGGTGGATTGTCTGGGAGAGTGTTGGGATTGCATATTTCCCCCTTTCATACCTCCACATGGAGATA	-			P-0023408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	47	335	0	ENST00000288135.5:c.756+3_756+175del		p.X252_splice	ENST00000288135	NM_000222.2	252																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66356416	66356416	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	75	407	0	ENST00000273854.3:c.1081C>A	p.Pro361Thr	p.P361T	ENST00000273854	NM_004439.5	361	Cct/Act																																																																															
RAD50	10111	MSKCC	GRCh37	5	131895058	131895058	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0023408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	143	363	0	ENST00000265335.6:c.212A>T	p.Lys71Met	p.K71M	ENST00000265335		71	aAg/aTg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117700323	117700323	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0023408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	57	373	0	ENST00000368508.3:c.2497-1G>A		p.X833_splice	ENST00000368508	NM_002944.2	833																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53243968	53243968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	153	913	0	ENST00000375401.3:c.1025G>T	p.Cys342Phe	p.C342F	ENST00000375401	NM_004187.3	342	tGt/tTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0023420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	161	882	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0023420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	129	924	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713469	40713469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	92	834	5	ENST00000373198.4:c.4046G>A	p.Arg1349His	p.R1349H	ENST00000373198	NM_133170.3	1349	cGt/cAt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	166	773	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473779	67473779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	200	732	1	ENST00000327367.4:c.859C>T	p.Arg287Trp	p.R287W	ENST00000327367	NM_005902.3	287	Cgg/Tgg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119762	70119763	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	83	832	0	ENST00000245479.2:c.768dup	p.Arg257AlafsTer39	p.R257Afs*39	ENST00000245479	NM_000346.3	255	gag/gaGg																																																																															
APC	324	MSKCC	GRCh37	5	112173684	112173685	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	74	577	0	ENST00000257430.4:c.2395dup	p.Tyr799LeufsTer4	p.Y799Lfs*4	ENST00000257430	NM_000038.5	798	gat/gaTt																																																																															
APC	324	MSKCC	GRCh37	5	112175625	112175625	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	60	470	0	ENST00000257430.4:c.4334del	p.Thr1445LysfsTer28	p.T1445Kfs*28	ENST00000257430	NM_000038.5	1445	aCa/aa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0023440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	89	633	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0023440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	134	564	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475061	40475063	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0023440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	39	727	0	ENST00000264657.5:c.1847_1849del	p.Glu616del	p.E616del	ENST00000264657	NM_139276.2	616	gAAGga/gga																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38982004	38982004	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	75	600	0	ENST00000357387.3:c.718A>G	p.Thr240Ala	p.T240A	ENST00000357387	NM_152756.3	240	Act/Gct																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056108	26056108	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	29	464	0	ENST00000343677.2:c.549G>C	p.Lys183Asn	p.K183N	ENST00000343677	NM_005319.3	183	aaG/aaC																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046372	69046372	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	39	521	0	ENST00000288368.4:c.3845T>A	p.Leu1282His	p.L1282H	ENST00000288368	NM_024870.2	1282	cTc/cAc																																																																															
CD274	29126	MSKCC	GRCh37	9	5457102	5457102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	21	356	0	ENST00000381577.3:c.76G>A	p.Asp26Asn	p.D26N	ENST00000381577	NM_014143.3	26	Gac/Aac																																																																															
ATRX	546	MSKCC	GRCh37	X	76938264	76938264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	48	668	0	ENST00000373344.5:c.2484G>A	p.Met828Ile	p.M828I	ENST00000373344	NM_000489.3	828	atG/atA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0023442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	51	351	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0023442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	68	615	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
CBFB	865	MSKCC	GRCh37	16	67070644	67070645	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0023442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	19	191	0	ENST00000412916.2:c.271_272del	p.Glu91SerfsTer24	p.E91Sfs*24	ENST00000412916		90	AGa/a																																																																															
EP300	2033	MSKCC	GRCh37	22	41573176	41573176	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	64	615	1	ENST00000263253.7:c.5461C>T	p.Arg1821Ter	p.R1821*	ENST00000263253	NM_001429.3	1821	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	465	782	0	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																															
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	98	218	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																															
APC	324	MSKCC	GRCh37	5	112175096	112175097	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0023443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	43	191	0	ENST00000257430.4:c.3807_3808delAT	p.Ile1269MetfsTer6	p.I1269Mfs*6	ENST00000257430	NM_000038.5	1269	ATa/a																																																																															
NSD1	64324	MSKCC	GRCh37	5	176710894	176710894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	53	432	0	ENST00000439151.2:c.6116G>A	p.Arg2039His	p.R2039H	ENST00000439151	NM_022455.4	2039	cGt/cAt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36208923	36208925	+	start_lost,inframe_deletion	Translation_Start_Site	DEL	GGC	GGC	-			P-0023443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	10	26	0	ENST00000222270.7:c.14_16del	p.Ala5del	p.A5del	ENST00000222270	NM_014727.1	1	atGGCg/atg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436132	110436132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1462	224	739	0	ENST00000375856.3:c.2269G>T	p.Asp757Tyr	p.D757Y	ENST00000375856	NM_003749.2	757	Gat/Tat																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38643531	38643531	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146702985		P-0023443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	99	504	0	ENST00000299084.4:c.1001G>A	p.Arg334His	p.R334H	ENST00000299084	NM_152594.2	334	cGc/cAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117964	70117964	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0023443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	20	241	0	ENST00000245479.2:c.431+1G>T		p.X144_splice	ENST00000245479	NM_000346.3	144																																																																																
ERF	2077	MSKCC	GRCh37	19	42752763	42752763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1195	92	734	2	ENST00000222329.4:c.1501G>A	p.Ala501Thr	p.A501T	ENST00000222329	NM_006494.2	501	Gct/Act																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	196	719	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0023444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	213	764	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	76	373	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																															
APC	324	MSKCC	GRCh37	5	112164585	112164585	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	135	286	0	ENST00000257430.4:c.1659G>A	p.Trp553Ter	p.W553*	ENST00000257430	NM_000038.5	553	tgG/tgA																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562286	21562286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	530	854	0	ENST00000382592.4:c.1633C>T	p.Arg545Cys	p.R545C	ENST00000382592	NM_014572.2	545	Cgt/Tgt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260312	16260312	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	83	555	1	ENST00000375759.3:c.7577A>T	p.Asp2526Val	p.D2526V	ENST00000375759	NM_015001.2	2526	gAt/gTt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843643	156843643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	130	924	1	ENST00000524377.1:c.1069G>A	p.Gly357Ser	p.G357S	ENST00000524377	NM_002529.3	357	Ggc/Agc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920424	114920437	+	protein_altering_variant	In_Frame_Del	DEL	ACAGACTTTATGGT	ACAGACTTTATGGT	CG			P-0023444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	246	532	3	ENST00000543371.1:c.1365_1378delinsCG	p.Gln456_Cys460delinsGly	p.Q456_C460delinsG	ENST00000543371	NM_001198531.1	455	cgACAGACTTTATGGTgc/cgCGgc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729717	41729717	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	81	566	0	ENST00000242208.4:c.812A>C	p.Lys271Thr	p.K271T	ENST00000242208	NM_002192.2	271	aAg/aCg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69011974	69011974	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	463	824	1	ENST00000288368.4:c.2611A>G	p.Asn871Asp	p.N871D	ENST00000288368	NM_024870.2	871	Aat/Gat																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920436	114920436	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	246	515	0	ENST00000543371.1:c.1377G>C	p.Trp459Cys	p.W459C	ENST00000543371	NM_001198531.1	459	tgG/tgC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	174	625	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0023445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	298	877	1	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	341230	341230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	511	796	0	ENST00000262320.3:c.2254G>A	p.Val752Met	p.V752M	ENST00000262320	NM_003502.3	752	Gtg/Atg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15973694	15973694	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	144	501	0	ENST00000268712.3:c.4298del	p.Gly1433GlufsTer6	p.G1433Efs*6	ENST00000268712	NM_006311.3	1433	gGa/ga																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868686	37868686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	181	643	0	ENST00000269571.5:c.1133C>T	p.Pro378Leu	p.P378L	ENST00000269571		378	cCg/cTg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0006631-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			440	208	612	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006631-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			245	146	396	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0006631-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			442	249	651	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144498	11144498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006631-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			525	264	776	0	ENST00000344626.4:c.3830C>T	p.Pro1277Leu	p.P1277L	ENST00000344626	NM_003072.3	1277	cCg/cTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68849442	68849442	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006631-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			211	226	728	1	ENST00000261769.5:c.1345C>T	p.Gln449Ter	p.Q449*	ENST00000261769	NM_004360.3	449	Cag/Tag																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197077	26197077	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006631-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			543	180	533	0	ENST00000356476.2:c.402G>C	p.Glu134Asp	p.E134D	ENST00000356476		134	gaG/gaC																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561232	9561232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006631-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			749	40	567	1	ENST00000353224.5:c.550G>A	p.Glu184Lys	p.E184K	ENST00000353224	NM_177990.2	184	Gag/Aag																																																																															
MGA	23269	MSKCC	GRCh37	15	42041704	42041704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006631-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			320	178	530	1	ENST00000219905.7:c.5899C>T	p.Gln1967Ter	p.Q1967*	ENST00000219905	NM_001164273.1	1967	Cag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42042440	42042440	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006631-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			445	258	633	0	ENST00000219905.7:c.6635C>A	p.Ser2212Ter	p.S2212*	ENST00000219905	NM_001164273.1	2212	tCa/tAa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748110	43748110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006631-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			407	157	544	0	ENST00000382044.4:c.2696G>A	p.Ser899Asn	p.S899N	ENST00000382044	NM_001141980.1	899	aGc/aAc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265598	152265598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006631-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			365	191	568	0	ENST00000206249.3:c.1051G>A	p.Asp351Asn	p.D351N	ENST00000206249	NM_000125.3	351	Gac/Aac																																																																															
MET	4233	MSKCC	GRCh37	7	116340024	116340024	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006631-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			265	174	367	0	ENST00000397752.3:c.886C>G	p.Leu296Val	p.L296V	ENST00000397752	NM_000245.2	296	Ctg/Gtg																																																																															
LYN	4067	MSKCC	GRCh37	8	56864624	56864624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006631-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			796	51	783	0	ENST00000519728.1:c.587C>T	p.Ser196Phe	p.S196F	ENST00000519728	NM_002350.3	196	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0022881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	117	1080	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0022881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	210	778	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
RB1	5925	MSKCC	GRCh37	13	49039147	49039147	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	75	499	0	ENST00000267163.4:c.2228delT	p.Leu743Ter	p.L743*	ENST00000267163	NM_000321.2	742	gTt/gt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692883	89692883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	39	575	2	ENST00000371953.3:c.367C>T	p.His123Tyr	p.H123Y	ENST00000371953	NM_000314.4	123	Cac/Tac																																																																															
PALB2	79728	MSKCC	GRCh37	16	23637719	23637719	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0022881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	88	690	0	ENST00000261584.4:c.2587-1G>A		p.X863_splice	ENST00000261584	NM_024675.3	863																																																																																
PRKAR1A	5573	MSKCC	GRCh37	17	66524004	66524004	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	41	406	0	ENST00000358598.2:c.732G>C	p.Lys244Asn	p.K244N	ENST00000358598	NM_212471.2	244	aaG/aaC																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39637956	39637956	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	65	902	0	ENST00000262039.4:c.2373G>C	p.Gln791His	p.Q791H	ENST00000262039	NM_002647.2	791	caG/caC																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943410	17943410	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	123	1215	0	ENST00000458235.1:c.2598G>T	p.Arg866Ser	p.R866S	ENST00000458235	NM_000215.3	866	agG/agT																																																																															
APC	324	MSKCC	GRCh37	5	112176344	112176344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	38	372	0	ENST00000257430.4:c.5053G>A	p.Glu1685Lys	p.E1685K	ENST00000257430	NM_000038.5	1685	Gaa/Aaa																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911302	29911302	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	33	530	0	ENST00000376809.5:c.601G>T	p.Glu201Ter	p.E201*	ENST00000376809	NM_002116.7	201	Gag/Tag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545590	106545590	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	68	678	0	ENST00000359195.3:c.3067C>A	p.His1023Asn	p.H1023N	ENST00000359195	NM_002649.2	1023	Cac/Aac																																																																															
MED12	9968	MSKCC	GRCh37	X	70360600	70360600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	109	619	1	ENST00000374080.3:c.6160C>T	p.Gln2054Ter	p.Q2054*	ENST00000374080		2054	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0023353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	242	722	4	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0023353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	168	460	3	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	275	954	5	ENST00000269305.4:c.737T>A	p.Met246Lys	p.M246K	ENST00000269305	NM_001126112.2	246	aTg/aAg																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395664	45395664	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	198	678	0	ENST00000262160.6:c.470del	p.Lys157ArgfsTer6	p.K157Rfs*6	ENST00000262160	NM_005901.5	157	aAg/ag																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771827	135771827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	230	888	9	ENST00000298552.3:c.3290G>A	p.Arg1097His	p.R1097H	ENST00000298552	NM_001162426.1	1097	cGt/cAt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993695	72993695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	193	738	6	ENST00000268489.5:c.350G>A	p.Gly117Asp	p.G117D	ENST00000268489	NM_006885.3	117	gGt/gAt																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114911633	114911633	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	180	628	5	ENST00000543371.1:c.1151T>G	p.Leu384Arg	p.L384R	ENST00000543371	NM_001198531.1	384	cTt/cGt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67457358	67457367	+	frameshift_variant	Frame_Shift_Del	DEL	TCGCCTTCAA	TCGCCTTCAA	-			P-0023353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	826	834	8	ENST00000327367.4:c.333_342del	p.Phe111LeufsTer2	p.F111Lfs*2	ENST00000327367	NM_005902.3	111	tTCGCCTTCAAt/tt																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006063	22006063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	162	693	10	ENST00000276925.6:c.340C>T	p.Arg114Cys	p.R114C	ENST00000276925	NM_004936.3	114	Cgt/Tgt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717687	89717690	+	frameshift_variant	Frame_Shift_Del	DEL	TTCA	TTCA	-			P-0023355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	97	557	0	ENST00000371953.3:c.713_716del	p.Phe238CysfsTer17	p.F238Cfs*17	ENST00000371953	NM_000314.4	238	TTCAtg/tg																																																																															
NF1	4763	MSKCC	GRCh37	17	29576062	29576063	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTCT			P-0023355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	83	748	0	ENST00000358273.4:c.4037_4040dup	p.His1348LeufsTer33	p.H1348Lfs*33	ENST00000358273	NM_001042492.2	1345	-/TTCT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0023379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	521	509	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591837	48591837	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	79	480	1	ENST00000342988.3:c.1000C>T	p.Gln334Ter	p.Q334*	ENST00000342988	NM_005359.5	334	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	102	716	0	ENST00000269305.4:c.842A>T	p.Asp281Val	p.D281V	ENST00000269305	NM_001126112.2	281	gAc/gTc																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175963	176175963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	83	269	0	ENST00000367669.3:c.152G>T	p.Gly51Val	p.G51V	ENST00000367669	NM_022457.5	51	gGg/gTg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39251213	39251213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	36	794	0	ENST00000402219.2:c.1140G>T	p.Leu380Phe	p.L380F	ENST00000402219	NM_005633.3	380	ttG/ttT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285277	212285277	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	33	478	0	ENST00000342788.4:c.3024G>T	p.Leu1008Phe	p.L1008F	ENST00000342788	NM_005235.2	1008	ttG/ttT																																																																															
KDR	3791	MSKCC	GRCh37	4	55960981	55960981	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	144	507	0	ENST00000263923.4:c.2959G>T	p.Glu987Ter	p.E987*	ENST00000263923	NM_002253.2	987	Gaa/Taa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93969074	93969074	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	26	279	0	ENST00000369303.4:c.1922C>T	p.Ala641Val	p.A641V	ENST00000369303	NM_004440.3	641	gCa/gTa																																																																															
PMS2	5395	MSKCC	GRCh37	7	6031690	6031690	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0023379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	38	574	0	ENST00000265849.7:c.904-2A>G		p.X302_splice	ENST00000265849	NM_000535.5	302																																																																																
MAP2K4	6416	MSKCC	GRCh37	17	12028670	12028670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	106	676	0	ENST00000353533.5:c.873G>T	p.Trp291Cys	p.W291C	ENST00000353533	NM_003010.3	291	tgG/tgT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	232	766	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28901685	28901685	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	146	500	0	ENST00000282397.4:c.2710C>T	p.Pro904Ser	p.P904S	ENST00000282397	NM_002019.4	904	Cct/Tct																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118348729	118348729	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	192	399	0	ENST00000534358.1:c.3384del	p.Ile1129SerfsTer18	p.I1129Sfs*18	ENST00000534358	NM_005933.3	1128	Ccc/cc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118348756	118348756	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	208	432	1	ENST00000534358.1:c.3409A>G	p.Arg1137Gly	p.R1137G	ENST00000534358	NM_005933.3	1137	Aga/Gga																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522563	176522563	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777277309		P-0023392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	176	711	1	ENST00000292408.4:c.1660G>A	p.Ala554Thr	p.A554T	ENST00000292408	NM_213647.1	554	Gcc/Acc																																																																															
ATM	472	MSKCC	GRCh37	11	108203622	108203623	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0023419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	188	348	1	ENST00000278616.4:c.7925_7926del	p.Arg2642LysfsTer13	p.R2642Kfs*13	ENST00000278616	NM_000051.3	2641	cAG/c																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061222	38061230	+	inframe_deletion	In_Frame_Del	DEL	TTCTCGAAC	TTCTCGAAC	-			P-0023419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	1341	664	0	ENST00000250448.2:c.759_767del	p.Met253_Asn256delinsIle	p.M253_N256delinsI	ENST00000250448	NM_004496.3	253	atGTTCGAGAAc/atc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0023468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	140	838	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612754	228612754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	106	927	1	ENST00000366696.1:c.273G>A	p.Met91Ile	p.M91I	ENST00000366696	NM_003493.2	91	atG/atA																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344809	118344809	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	75	564	0	ENST00000534358.1:c.2935A>G	p.Thr979Ala	p.T979A	ENST00000534358	NM_005933.3	979	Act/Gct																																																																															
FLCN	201163	MSKCC	GRCh37	17	17120387	17120387	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	82	700	0	ENST00000285071.4:c.1172T>C	p.Leu391Pro	p.L391P	ENST00000285071	NM_144997.5	391	cTt/cCt																																																																															
KIT	3815	MSKCC	GRCh37	4	55589774	55589774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	38	539	0	ENST00000288135.5:c.1256A>G	p.Asp419Gly	p.D419G	ENST00000288135	NM_000222.2	419	gAc/gGc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974751	21974751	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	67	408	0	ENST00000304494.5:c.76G>T	p.Glu26Ter	p.E26*	ENST00000304494	NM_000077.4	26	Gag/Tag																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2220221	2220221	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	78	693	2	ENST00000398665.3:c.2806G>T	p.Gly936Cys	p.G936C	ENST00000398665	NM_032482.2	936	Ggc/Tgc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523275	9523275	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	78	728	3	ENST00000353224.5:c.1962G>T	p.Arg654Ser	p.R654S	ENST00000353224	NM_177990.2	654	agG/agT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	73	688	0	ENST00000269305.4:c.783-1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
BCL10	8915	MSKCC	GRCh37	1	85733453	85733453	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	102	699	0	ENST00000370580.1:c.559T>G	p.Phe187Val	p.F187V	ENST00000370580	NM_003921.4	187	Ttc/Gtc																																																																															
POLE	5426	MSKCC	GRCh37	12	133220509	133220509	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	51	817	0	ENST00000320574.5:c.4204G>T	p.Val1402Leu	p.V1402L	ENST00000320574	NM_006231.2	1402	Gtg/Ttg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576101	88576101	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	29	832	0	ENST00000360948.2:c.1572C>G	p.His524Gln	p.H524Q	ENST00000360948	NM_001012338.2	524	caC/caG																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81969983	81969983	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	14	422	0	ENST00000359376.3:c.3052G>T	p.Asp1018Tyr	p.D1018Y	ENST00000359376	NM_002661.3	1018	Gat/Tat																																																																															
EZH1	2145	MSKCC	GRCh37	17	40880928	40880928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	38	858	3	ENST00000428826.2:c.32G>T	p.Cys11Phe	p.C11F	ENST00000428826		11	tGt/tTt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219910	36219910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	57	883	1	ENST00000222270.7:c.4712C>T	p.Ala1571Val	p.A1571V	ENST00000222270	NM_014727.1	1571	gCc/gTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221012	36221012	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	43	760	0	ENST00000222270.7:c.5062C>G	p.Leu1688Val	p.L1688V	ENST00000222270	NM_014727.1	1688	Ctc/Gtc																																																																															
ALK	238	MSKCC	GRCh37	2	29432688	29432688	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	664	35	0	ENST00000389048.3:c.3800A>C	p.Lys1267Thr	p.K1267T	ENST00000389048	NM_004304.4	1267	aAg/aCg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100937	41100937	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	680	78	0	ENST00000373198.4:c.1419C>A	p.Ser473Arg	p.S473R	ENST00000373198	NM_133170.3	473	agC/agA																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130475	29130475	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	74	870	0	ENST00000328354.6:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000328354	NM_007194.3	79	Gaa/Caa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143007302	143007302	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	33	706	0	ENST00000262992.4:c.2482G>C	p.Ala828Pro	p.A828P	ENST00000262992	NM_001101669.1	828	Gca/Cca																																																																															
CARD11	84433	MSKCC	GRCh37	7	2953019	2953019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	108	851	3	ENST00000396946.4:c.2921G>A	p.Arg974His	p.R974H	ENST00000396946	NM_032415.4	974	cGc/cAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106522611	106522611	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	56	747	0	ENST00000359195.3:c.2588G>T	p.Cys863Phe	p.C863F	ENST00000359195	NM_002649.2	863	tGc/tTc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499651	8499651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	503	16	0	ENST00000356435.5:c.2318C>A	p.Ala773Glu	p.A773E	ENST00000356435		773	gCa/gAa																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250074	110250074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	43	755	2	ENST00000374672.4:c.601G>A	p.Ala201Thr	p.A201T	ENST00000374672	NM_004235.4	201	Gcc/Acc																																																																															
CDH1	999	MSKCC	GRCh37	16	68867234	68867234	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0023473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	115	535	0	ENST00000261769.5:c.2481T>A	p.Tyr827Ter	p.Y827*	ENST00000261769	NM_004360.3	827	taT/taA																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	56	385	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166710	32166710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	100	719	1	ENST00000375023.3:c.4528G>A	p.Gly1510Ser	p.G1510S	ENST00000375023	NM_004557.3	1510	Ggt/Agt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249441	110249441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	153	797	0	ENST00000374672.4:c.1132G>A	p.Glu378Lys	p.E378K	ENST00000374672	NM_004235.4	378	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	47	934	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	118	935	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0023475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	55	685	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs786201057		P-0023475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	37	743	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858561	9858561	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	67	780	0	ENST00000330684.3:c.2840G>C	p.Arg947Thr	p.R947T	ENST00000330684	NM_001134407.1	947	aGg/aCg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492685	56492685	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0023475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	25	651	0	ENST00000407977.2:c.252+2C>A		p.X84_splice	ENST00000407977		84																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971086	21971100	+	frameshift_variant	Frame_Shift_Del	DEL	AGGAAGCCCTCCCGG	AGGAAGCCCTCCCGG	T			P-0023475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	29	658	2	ENST00000304494.5:c.258_272delinsA	p.Arg87GlyfsTer28	p.R87Gfs*28	ENST00000304494	NM_000077.4	86	gcCCGGGAGGGCTTCCTg/gcAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	543	1032	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579522	7579522	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	261	1134	1	ENST00000269305.4:c.165del	p.Glu56LysfsTer67	p.E56Kfs*67	ENST00000269305	NM_001126112.2	55	acT/ac																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620615	52620616	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TTAA			P-0023478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	227	884	0	ENST00000394830.3:c.3134_3137dup	p.Lys1046AsnfsTer2	p.K1046Nfs*2	ENST00000394830	NM_018313.4	1046	aag/aaTTAAg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245546	46245546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	48	331	0	ENST00000334344.6:c.3640G>A	p.Val1214Ile	p.V1214I	ENST00000334344	NM_152641.2	1214	Gta/Ata																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246092	46246092	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	80	404	0	ENST00000334344.6:c.4186C>T	p.Gln1396Ter	p.Q1396*	ENST00000334344	NM_152641.2	1396	Caa/Taa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495415	56495415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	140	679	0	ENST00000267101.3:c.3605G>A	p.Arg1202Gln	p.R1202Q	ENST00000267101	NM_001982.3	1202	cGg/cAg																																																																															
POLE	5426	MSKCC	GRCh37	12	133220529	133220529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs5744933		P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	142	611	0	ENST00000320574.5:c.4184A>G	p.Tyr1395Cys	p.Y1395C	ENST00000320574	NM_006231.2	1395	tAc/tGc																																																																															
MGA	23269	MSKCC	GRCh37	15	41961500	41961500	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	54	598	2	ENST00000219905.7:c.408G>T	p.Lys136Asn	p.K136N	ENST00000219905	NM_001164273.1	136	aaG/aaT																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476342	88476342	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	85	746	0	ENST00000360948.2:c.1790A>G	p.His597Arg	p.H597R	ENST00000360948	NM_001012338.2	597	cAt/cGt																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99478256	99478256	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	52	321	0	ENST00000268035.6:c.3160A>T	p.Met1054Leu	p.M1054L	ENST00000268035	NM_000875.3	1054	Atg/Ttg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934599	9934599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	77	509	0	ENST00000330684.3:c.1556C>A	p.Ser519Tyr	p.S519Y	ENST00000330684	NM_001134407.1	519	tCt/tAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	107	840	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004662	16004662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	83	675	0	ENST00000268712.3:c.2592G>T	p.Gln864His	p.Q864H	ENST00000268712	NM_006311.3	864	caG/caT																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428018	33428018	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	94	681	0	ENST00000335858.7:c.605G>T	p.Trp202Leu	p.W202L	ENST00000335858	NM_133629.2	202	tGg/tTg																																																																															
STAT3	6774	MSKCC	GRCh37	17	40489787	40489787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	96	608	0	ENST00000264657.5:c.639G>T	p.Met213Ile	p.M213I	ENST00000264657	NM_139276.2	213	atG/atT																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437533	56437533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	93	667	0	ENST00000407977.2:c.929C>T	p.Pro310Leu	p.P310L	ENST00000407977		310	cCc/cTc																																																																															
ALK	238	MSKCC	GRCh37	2	29451786	29451786	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	98	743	0	ENST00000389048.3:c.2779G>T	p.Gly927Trp	p.G927W	ENST00000389048	NM_004304.4	927	Ggg/Tgg																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99149845	99149845	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	61	384	0	ENST00000074304.5:c.157A>G	p.Ser53Gly	p.S53G	ENST00000074304	NM_001134224.1	53	Agt/Ggt																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881716	111881716	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	35	534	0	ENST00000393256.3:c.394G>C	p.Ala132Pro	p.A132P	ENST00000393256	NM_006538.4	132	Gct/Cct																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164804	36164805	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	69	828	0	ENST00000300305.3:c.1070dup	p.Thr358AspfsTer242	p.T358Dfs*242	ENST00000300305		357	ccg/ccCg																																																																															
ERG	2078	MSKCC	GRCh37	21	39772501	39772501	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	35	566	0	ENST00000288319.7:c.740G>T	p.Arg247Met	p.R247M	ENST00000288319	NM_182918.3	247	aGg/aTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161166	56161166	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	25	388	0	ENST00000399503.3:c.1036-1G>A		p.X346_splice	ENST00000399503	NM_005921.1	346																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32188953	32188953	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	167	831	0	ENST00000375023.3:c.601G>T	p.Asp201Tyr	p.D201Y	ENST00000375023	NM_004557.3	201	Gac/Tac																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120431	94120431	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	42	390	2	ENST00000369303.4:c.620C>A	p.Ser207Tyr	p.S207Y	ENST00000369303	NM_004440.3	207	tCc/tAc																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345929	152345929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	131	594	0	ENST00000359321.1:c.641G>A	p.Arg214Gln	p.R214Q	ENST00000359321	NM_005431.1	214	cGa/cAa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70964391	70964391	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	45	448	0	ENST00000276594.2:c.1637G>T	p.Cys546Phe	p.C546F	ENST00000276594	NM_024504.3	546	tGc/tTc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5123066	5123066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	35	582	1	ENST00000381652.3:c.3122G>A	p.Gly1041Glu	p.G1041E	ENST00000381652	NM_004972.3	1041	gGa/gAa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518060	8518060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	40	486	0	ENST00000356435.5:c.1331C>T	p.Pro444Leu	p.P444L	ENST00000356435		444	cCa/cTa																																																																															
ABL1	25	MSKCC	GRCh37	9	133738312	133738312	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	78	534	0	ENST00000318560.5:c.712G>T	p.Glu238Ter	p.E238*	ENST00000318560	NM_005157.4	238	Gaa/Taa																																																																															
ATRX	546	MSKCC	GRCh37	X	76938427	76938427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	45	362	0	ENST00000373344.5:c.2321A>G	p.Asp774Gly	p.D774G	ENST00000373344	NM_000489.3	774	gAt/gGt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039659	47039666	+	frameshift_variant	Frame_Shift_Del	DEL	ACTATCGA	ACTATCGA	-			P-0023368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	187	755	0	ENST00000329236.7:c.877_884del	p.Thr293ArgfsTer7	p.T293Rfs*7	ENST00000329236	NM_001204466.1	293	ACTATCGAc/c																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0023251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	171	543	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0023251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	648	835	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	250	813	0	ENST00000369535.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caT																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729180	66729180	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	670	820	0	ENST00000307102.5:c.388T>C	p.Tyr130His	p.Y130H	ENST00000307102	NM_002755.3	130	Tat/Cat																																																																															
HGF	3082	MSKCC	GRCh37	7	81358978	81358978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	355	745	1	ENST00000222390.5:c.983G>A	p.Arg328His	p.R328H	ENST00000222390	NM_000601.4	328	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0023251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	310	413	1	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935409	36935409	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	271	804	2	ENST00000361632.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000361632		440	Cga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356112	66356112	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	134	646	0	ENST00000273854.3:c.1385T>C	p.Val462Ala	p.V462A	ENST00000273854	NM_004439.5	462	gTa/gCa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056350	180056350	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	246	856	1	ENST00000261937.6:c.894C>A	p.His298Gln	p.H298Q	ENST00000261937	NM_182925.4	298	caC/caA																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64290041	64290041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	238	728	0	ENST00000370651.3:c.484G>T	p.Asp162Tyr	p.D162Y	ENST00000370651	NM_003463.4	162	Gat/Tat																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0023259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	129	724	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103666	47103666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	85	512	0	ENST00000409792.3:c.6280del	p.Arg2094GlyfsTer53	p.R2094Gfs*53	ENST00000409792	NM_014159.6	2094	Agg/gg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0023422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	378	686	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66523985	66523985	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	119	309	0	ENST00000358598.2:c.713G>C	p.Ser238Thr	p.S238T	ENST00000358598	NM_212471.2	238	aGc/aCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0023422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	268	782	0	ENST00000269305.4:c.920-2A>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
IRS2	8660	MSKCC	GRCh37	13	110436504	110436504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	430	1177	1	ENST00000375856.3:c.1897G>A	p.Gly633Arg	p.G633R	ENST00000375856	NM_003749.2	633	Gga/Aga																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602923	10602923	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018187-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			460	368	862	0	ENST00000171111.5:c.655G>T	p.Glu219Ter	p.E219*	ENST00000171111	NM_203500.1	219	Gag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221229	1221229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018187-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	334	719	0	ENST00000326873.7:c.752G>A	p.Gly251Asp	p.G251D	ENST00000326873	NM_000455.4	251	gGt/gAt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962298	2962298	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146394338		P-0018187-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			749	94	734	2	ENST00000396946.4:c.2239G>A	p.Val747Ile	p.V747I	ENST00000396946	NM_032415.4	747	Gtc/Atc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5077510	5077510	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018187-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			416	84	469	0	ENST00000381652.3:c.1922A>G	p.Asn641Ser	p.N641S	ENST00000381652	NM_004972.3	641	aAt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577101	7577102	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCAGGACAGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCA			P-0023212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	127	890	0	ENST00000269305.4:c.783_836dup	p.Gly262_Gly279dup	p.G262_G279dup	ENST00000269305	NM_001126112.2	262	ggg/ggTGGTAATCTACTGGGACGGAACAGCTTTGAGGTGCGTGTTTGTGCCTGTCCTGGg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15350061	15350061	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	284	923	0	ENST00000263377.2:c.3591G>C	p.Lys1197Asn	p.K1197N	ENST00000263377	NM_058243.2	1197	aaG/aaC																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111741	56111741	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	48	115	0	ENST00000399503.3:c.341A>T	p.His114Leu	p.H114L	ENST00000399503	NM_005921.1	114	cAc/cTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	252	824	3	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0023222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	288	721	3	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
CDH1	999	MSKCC	GRCh37	16	68772290	68772290	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	303	1093	2	ENST00000261769.5:c.139G>T	p.Glu47Ter	p.E47*	ENST00000261769	NM_004360.3	47	Gag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0023275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	211	630	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0023277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	47	860	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244231	46244232	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0023277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	43	617	1	ENST00000334344.6:c.2330_2331del	p.Thr777SerfsTer63	p.T777Sfs*63	ENST00000334344	NM_152641.2	775	ttACac/ttac																																																																															
TBX3	6926	MSKCC	GRCh37	12	115117333	115117333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	44	582	1	ENST00000257566.3:c.841G>T	p.Val281Leu	p.V281L	ENST00000257566	NM_016569.3	281	Gtg/Ttg																																																																															
PARK2	5071	MSKCC	GRCh37	6	161970018	161970018	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	55	806	0	ENST00000366898.1:c.951G>T	p.Gln317His	p.Q317H	ENST00000366898	NM_004562.2	317	caG/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0023285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	123	861	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468032	50468032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	30	559	0	ENST00000331340.3:c.1267C>T	p.Arg423Cys	p.R423C	ENST00000331340	NM_006060.4	423	Cgc/Tgc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678331	88678331	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0023285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	86	720	0	ENST00000360948.2:c.1204+1G>T		p.X402_splice	ENST00000360948	NM_001012338.2	402																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9928073	9928073	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	26	436	0	ENST00000330684.3:c.1666T>G	p.Ser556Ala	p.S556A	ENST00000330684	NM_001134407.1	556	Tct/Gct																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984714	11984714	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	38	345	0	ENST00000353533.5:c.260T>C	p.Leu87Pro	p.L87P	ENST00000353533	NM_003010.3	87	cTg/cCg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573535	48573535	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	34	477	0	ENST00000342988.3:c.119T>A	p.Ile40Asn	p.I40N	ENST00000342988	NM_005359.5	40	aTt/aAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0023310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	436	676	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	215	617	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0023310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	345	561	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																																
TEK	7010	MSKCC	GRCh37	9	27217701	27217701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	165	735	0	ENST00000380036.4:c.3007C>T	p.Arg1003Cys	p.R1003C	ENST00000380036	NM_000459.3	1003	Cgc/Tgc																																																																															
PARP1	142	MSKCC	GRCh37	1	226570849	226570849	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	93	693	0	ENST00000366794.5:c.1047G>T	p.Lys349Asn	p.K349N	ENST00000366794	NM_001618.3	349	aaG/aaT																																																																															
RECQL	5965	MSKCC	GRCh37	12	21624424	21624424	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	156	879	2	ENST00000421138.2:c.1605del	p.Thr536HisfsTer15	p.T536Hfs*15	ENST00000421138		535	ccC/cc																																																																															
NUP93	9688	MSKCC	GRCh37	16	56872962	56872962	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	92	500	0	ENST00000308159.5:c.2117A>T	p.His706Leu	p.H706L	ENST00000308159	NM_014669.4	706	cAt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0023311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	226	766	2	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119749	70119749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	249	818	1	ENST00000245479.2:c.751G>A	p.Asp251Asn	p.D251N	ENST00000245479	NM_000346.3	251	Gac/Aac																																																																															
YES1	7525	MSKCC	GRCh37	18	724456	724456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	246	810	0	ENST00000314574.4:c.1600G>A	p.Glu534Lys	p.E534K	ENST00000314574	NM_005433.3	534	Gag/Aag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212076	5212076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	298	820	1	ENST00000357368.4:c.4955G>A	p.Gly1652Asp	p.G1652D	ENST00000357368	NM_002850.3	1652	gGc/gAc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867293	45867293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	289	802	1	ENST00000391945.4:c.900G>T	p.Glu300Asp	p.E300D	ENST00000391945	NM_000400.3	300	gaG/gaT																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52598148	52598148	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	230	815	0	ENST00000394830.3:c.3718G>C	p.Asp1240His	p.D1240H	ENST00000394830	NM_018313.4	1240	Gac/Cac																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52598199	52598199	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	198	743	0	ENST00000394830.3:c.3667G>C	p.Glu1223Gln	p.E1223Q	ENST00000394830	NM_018313.4	1223	Gaa/Caa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521316	187521316	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	60	817	0	ENST00000441802.2:c.11839G>C	p.Asp3947His	p.D3947H	ENST00000441802	NM_005245.3	3947	Gat/Cat																																																																															
APC	324	MSKCC	GRCh37	5	112173354	112173354	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0023311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	113	465	0	ENST00000257430.4:c.2063C>G	p.Ser688Ter	p.S688*	ENST00000257430	NM_000038.5	688	tCa/tGa																																																																															
SMO	6608	MSKCC	GRCh37	7	128845102	128845102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	283	916	0	ENST00000249373.3:c.596G>A	p.Arg199Gln	p.R199Q	ENST00000249373	NM_005631.4	199	cGg/cAg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956763	68956763	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	206	865	0	ENST00000288368.4:c.881A>T	p.Tyr294Phe	p.Y294F	ENST00000288368	NM_024870.2	294	tAc/tTc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978732	70978732	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	144	564	0	ENST00000276594.2:c.921A>C	p.Glu307Asp	p.E307D	ENST00000276594	NM_024504.3	307	gaA/gaC																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484302	8484302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	159	741	0	ENST00000356435.5:c.3230C>A	p.Pro1077His	p.P1077H	ENST00000356435		1077	cCt/cAt																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652274	48652274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	277	473	4	ENST00000376670.3:c.945G>T	p.Lys315Asn	p.K315N	ENST00000376670	NM_002049.3	315	aaG/aaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	44	916	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0023312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	54	960	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
ETV6	2120	MSKCC	GRCh37	12	12038958	12038958	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0023312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	24	553	1	ENST00000396373.4:c.1251C>A	p.Phe417Leu	p.F417L	ENST00000396373	NM_001987.4	417	ttC/ttA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0023315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	33	813	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	54	949	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	33	634	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468082	120468082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	70	891	0	ENST00000256646.2:c.4357G>A	p.Gly1453Ser	p.G1453S	ENST00000256646	NM_024408.3	1453	Ggt/Agt																																																																															
POLE	5426	MSKCC	GRCh37	12	133235926	133235926	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	34	749	1	ENST00000320574.5:c.3230G>T	p.Arg1077Leu	p.R1077L	ENST00000320574	NM_006231.2	1077	cGc/cTc																																																																															
MGA	23269	MSKCC	GRCh37	15	42000369	42000370	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0023316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	22	646	2	ENST00000219905.7:c.2388_2389delinsTT	p.Arg796_Gly797delinsSerTer	p.R796_G797delinsS*	ENST00000219905	NM_001164273.1	796	agGGga/agTTga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217232	66217232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	42	695	0	ENST00000273854.3:c.2383G>A	p.Gly795Ser	p.G795S	ENST00000273854	NM_004439.5	795	Ggc/Agc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680017	30680017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	51	783	0	ENST00000376406.3:c.1702G>A	p.Glu568Lys	p.E568K	ENST00000376406	NM_014641.2	568	Gag/Aag																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508772	106508772	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	38	720	1	ENST00000359195.3:c.766A>T	p.Lys256Ter	p.K256*	ENST00000359195	NM_002649.2	256	Aaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	146	706	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0023341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	112	748	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971194	21971194	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	155	622	0	ENST00000304494.5:c.164del	p.Gly55AlafsTer91	p.G55Afs*91	ENST00000304494	NM_000077.4	55	gGc/gc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974678	21974678	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0023341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	49	660	2	ENST00000304494.5:c.149A>C	p.Gln50Pro	p.Q50P	ENST00000304494	NM_000077.4	50	cAg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	103	1008	0	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32893456	32893456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	17	313	0	ENST00000380152.3:c.310G>A	p.Asp104Asn	p.D104N	ENST00000380152		104	Gac/Aac																																																																															
ALK	238	MSKCC	GRCh37	2	29519872	29519872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	54	792	0	ENST00000389048.3:c.1699G>C	p.Val567Leu	p.V567L	ENST00000389048	NM_004304.4	567	Gtg/Ctg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371782	55371934	+	protein_altering_variant	In_Frame_Del	DEL	GGCCTGGCTGAGCCGCAGGCGGCCGCGCTGGGCCCCGAGGGCGGCCGCGTGGCCATGGACGGCCTGGGCCTCCAGTTCCCCGAGCAGGGCTTCCCCGCCGGCCCGCCGCTGCTGCCTCCGCACATGGGCGGCCACTACCGCGACTGCCAGAGT	GGCCTGGCTGAGCCGCAGGCGGCCGCGCTGGGCCCCGAGGGCGGCCGCGTGGCCATGGACGGCCTGGGCCTCCAGTTCCCCGAGCAGGGCTTCCCCGCCGGCCCGCCGCTGCTGCCTCCGCACATGGGCGGCCACTACCGCGACTGCCAGAGT	AGC			P-0023344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	169	637	5	ENST00000297316.4:c.472_624delinsAGC	p.Gly158_Gln207del	p.G158_Q207del	ENST00000297316	NM_022454.3	158	GGCCTGGCTGAGCCGCAGGCGGCCGCGCTGGGCCCCGAGGGCGGCCGCGTGGCCATGGACGGCCTGGGCCTCCAGTTCCCCGAGCAGGGCTTCCCCGCCGGCCCGCCGCTGCTGCCTCCGCACATGGGCGGCCACTACCGCGACTGCCAGAGT/AGC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0023249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	67	711	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115884	8115909	+	frameshift_variant	Frame_Shift_Del	DEL	CCACTCCAGCCACATGCTGACCACGC	CCACTCCAGCCACATGCTGACCACGC	-			P-0023256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	312	721	1	ENST00000346208.3:c.1234_1259del	p.Ser412AlafsTer86	p.S412Afs*86	ENST00000346208		410	agCCACTCCAGCCACATGCTGACCACGCcc/agcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs770248150		P-0023260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	93	528	1	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																																																															
STK11	6794	MSKCC	GRCh37	19	1207096	1207096	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	156	758	0	ENST00000326873.7:c.184A>T	p.Lys62Ter	p.K62*	ENST00000326873	NM_000455.4	62	Aag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610288	10610288	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	166	802	0	ENST00000171111.5:c.422A>G	p.Tyr141Cys	p.Y141C	ENST00000171111	NM_203500.1	141	tAc/tGc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355333	15355333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	91	426	0	ENST00000263377.2:c.2290C>T	p.Pro764Ser	p.P764S	ENST00000263377	NM_058243.2	764	Ccc/Tcc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32172059	32172059	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	148	744	0	ENST00000375023.3:c.2973C>G	p.His991Gln	p.H991Q	ENST00000375023	NM_004557.3	991	caC/caG																																																																															
PIM1	5292	MSKCC	GRCh37	6	37140827	37140827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	119	599	0	ENST00000373509.5:c.663G>T	p.Arg221Ser	p.R221S	ENST00000373509	NM_002648.3	221	agG/agT																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0023263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	82	490	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870948	12870948	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	27	401	0	ENST00000228872.4:c.176del	p.Lys59SerfsTer12	p.K59Sfs*12	ENST00000228872	NM_004064.3	59	Aag/ag																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26029178	26029191	+	frameshift_variant	Frame_Shift_Del	DEL	CATTCAGGCATGCA	CATTCAGGCATGCA	-			P-0023263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	113	503	0	ENST00000435504.4:c.159_172del	p.Ala54AsnfsTer9	p.A54Nfs*9	ENST00000435504		53	ctTGCATGCCTGAATGca/ctca																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046400	69046400	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	136	634	0	ENST00000288368.4:c.3873C>A	p.Asp1291Glu	p.D1291E	ENST00000288368	NM_024870.2	1291	gaC/gaA																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149501461	149501461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	200	556	0	ENST00000261799.4:c.2326G>A	p.Asp776Asn	p.D776N	ENST00000261799	NM_002609.3	776	Gat/Aat																																																																															
CDH1	999	MSKCC	GRCh37	16	68856050	68856050	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	280	635	0	ENST00000261769.5:c.1859delC	p.Pro620LeufsTer11	p.P620Lfs*11	ENST00000261769	NM_004360.3	620	Cct/ct																																																																															
YAP1	10413	MSKCC	GRCh37	11	101984980	101984981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	106	268	0	ENST00000282441.5:c.432dup	p.Thr145HisfsTer22	p.T145Hfs*22	ENST00000282441	NM_001130145.2	143	acc/aCcc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18658365	18658375	+	protein_altering_variant	In_Frame_Del	DEL	GTCATGCACAA	GTCATGCACAA	TC			P-0023264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	184	481	2	ENST00000266497.5:c.3170_3180delinsTC	p.Gly1057_Gln1060delinsVal	p.G1057_Q1060delinsV	ENST00000266497		1057	gGTCATGCACAA/gTC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	24	527	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0023265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	34	447	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0023265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	62	540	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0023265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	47	431	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0023265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	33	467	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0023265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	45	381	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717661	89717661	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0023265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	55	627	0	ENST00000371953.3:c.686C>G	p.Ser229Ter	p.S229*	ENST00000371953	NM_000314.4	229	tCa/tGa																																																																															
ATRX	546	MSKCC	GRCh37	X	76940000	76940000	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	84	599	1	ENST00000373344.5:c.748C>T	p.Arg250Ter	p.R250*	ENST00000373344	NM_000489.3	250	Cga/Tga																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285326	212285326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	29	449	0	ENST00000342788.4:c.2975G>A	p.Arg992His	p.R992H	ENST00000342788	NM_005235.2	992	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0023269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	75	792	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519922		P-0023269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	30	839	1	ENST00000397062.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000397062	NM_006164.4	79	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424990	49424990	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	68	774	2	ENST00000301067.7:c.13498C>T	p.Gln4500Ter	p.Q4500*	ENST00000301067	NM_003482.3	4500	Cag/Tag																																																																															
MED12	9968	MSKCC	GRCh37	X	70346230	70346230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	41	873	0	ENST00000374080.3:c.2581C>A	p.Leu861Ile	p.L861I	ENST00000374080		861	Ctt/Att																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432011	49432011	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	43	898	0	ENST00000301067.7:c.9128A>G	p.Asn3043Ser	p.N3043S	ENST00000301067	NM_003482.3	3043	aAt/aGt																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2213616	2213616	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	92	830	0	ENST00000398665.3:c.1636C>G	p.Leu546Val	p.L546V	ENST00000398665	NM_032482.2	546	Ctg/Gtg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0023300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	77	472	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115947	8115954	+	frameshift_variant	Frame_Shift_Del	DEL	ACCACACC	ACCACACC	-			P-0023300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	42	537	0	ENST00000346208.3:c.1296_1303del	p.His433LeufsTer71	p.H433Lfs*71	ENST00000346208		431	ggACCACACCac/ggac																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0023319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	143	1087	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416536	49416536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	98	905	1	ENST00000301067.7:c.16175G>A	p.Arg5392His	p.R5392H	ENST00000301067	NM_003482.3	5392	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921566	178921566	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793349		P-0023187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	57	397	0	ENST00000263967.3:c.1048G>A	p.Asp350Asn	p.D350N	ENST00000263967	NM_006218.2	350	Gac/Aac																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	78	597	0	ENST00000263967.3:c.333G>T	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaT																																																																															
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	46	280	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0023187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	169	935	1	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
H3F3C	440093	MSKCC	GRCh37	12	31944878	31944878	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141415515		P-0023187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	30	586	1	ENST00000340398.3:c.223G>A	p.Ala75Thr	p.A75T	ENST00000340398	NM_001013699.2	75	Gcg/Acg																																																																															
SDHA	6389	MSKCC	GRCh37	5	228366	228366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	47	599	0	ENST00000264932.6:c.688G>A	p.Glu230Lys	p.E230K	ENST00000264932	NM_004168.2	230	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0023302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	151	983	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517202		P-0023196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	27	689	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057751	27057751	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	371	1177	0	ENST00000324856.7:c.1459C>T	p.Gln487Ter	p.Q487*	ENST00000324856	NM_006015.4	487	Cag/Tag																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575082	64575083	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0023196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	224	825	0	ENST00000337652.1:c.739_740delinsTT	p.Ala247Phe	p.A247F	ENST00000337652	NM_130803.2	247	GCc/TTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532888	187532888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	58	545	0	ENST00000441802.2:c.9505G>T	p.Asp3169Tyr	p.D3169Y	ENST00000441802	NM_005245.3	3169	Gat/Tat																																																																															
FH	2271	MSKCC	GRCh37	1	241671911	241671911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	29	518	0	ENST00000366560.3:c.730C>T	p.Leu244Phe	p.L244F	ENST00000366560	NM_000143.3	244	Ctt/Ttt																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473636	67473636	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	127	677	0	ENST00000327367.4:c.716A>T	p.Glu239Val	p.E239V	ENST00000327367	NM_005902.3	239	gAg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3900396	3900396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	85	627	0	ENST00000262367.5:c.700G>A	p.Ala234Thr	p.A234T	ENST00000262367	NM_004380.2	234	Gcc/Acc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242485	+	protein_altering_variant	In_Frame_Del	DEL	ATTAAGAGAAGCAACATC	ATTAAGAGAAGCAACATC	GCAACA			P-0023206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	77	544	2	ENST00000275493.2:c.2238_2255delinsGCAACA	p.Leu747_Ser752delinsGlnHis	p.L747_S752delinsQH	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACATCt/gaGCAACAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0023218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	105	707	3	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0023218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	47	914	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0023218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	63	832	2	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9916121	9916121	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0023218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	20	489	0	ENST00000330684.3:c.2168G>T	p.Gly723Val	p.G723V	ENST00000330684	NM_001134407.1	723	gGg/gTg																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518419	69518419	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	19	169	1	ENST00000294312.3:c.226G>T	p.Ala76Ser	p.A76S	ENST00000294312	NM_005117.2	76	Gcg/Tcg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	394665	394665	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	40	733	0	ENST00000399788.2:c.5030T>G	p.Met1677Arg	p.M1677R	ENST00000399788	NM_001042603.1	1677	aTg/aGg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032133	10032133	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	46	714	1	ENST00000330684.3:c.690C>A	p.Tyr230Ter	p.Y230*	ENST00000330684	NM_001134407.1	230	taC/taA																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52621424	52621425	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	78	714	1	ENST00000394830.3:c.2992_2993insC	p.Tyr998SerfsTer7	p.Y998Sfs*7	ENST00000394830	NM_018313.4	998	tac/tCac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539950	187539950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	40	496	0	ENST00000441802.2:c.7790G>T	p.Arg2597Leu	p.R2597L	ENST00000441802	NM_005245.3	2597	cGa/cTa																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864442	162864442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	49	601	0	ENST00000366898.1:c.71del	p.Phe24SerfsTer20	p.F24Sfs*20	ENST00000366898	NM_004562.2	24	tTc/tc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0023221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	1218	628	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0023221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	114	723	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120484312	120484312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	32	462	0	ENST00000256646.2:c.2818G>T	p.Gly940Cys	p.G940C	ENST00000256646	NM_024408.3	940	Ggt/Tgt																																																																															
NPM1	4869	MSKCC	GRCh37	5	170817115	170817115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	34	521	0	ENST00000296930.5:c.119A>G	p.His40Arg	p.H40R	ENST00000296930	NM_002520.6	40	cAc/cGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	135	756	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579410	7579410	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	126	803	0	ENST00000269305.4:c.277del	p.Leu93CysfsTer30	p.L93Cfs*30	ENST00000269305	NM_001126112.2	93	Ctg/tg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	99	394	0	ENST00000291552.4:c.101C>A	p.Ser34Tyr	p.S34Y	ENST00000291552	NM_006758.2	34	tCt/tAt																																																																															
WT1	7490	MSKCC	GRCh37	11	32421519	32421519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	44	689	0	ENST00000332351.3:c.1073C>T	p.Thr358Met	p.T358M	ENST00000332351	NM_024426.4	358	aCg/aTg																																																																															
MGA	23269	MSKCC	GRCh37	15	41961492	41961492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	52	678	1	ENST00000219905.7:c.400C>T	p.Arg134Cys	p.R134C	ENST00000219905	NM_001164273.1	134	Cgt/Tgt																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740468	58740468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	43	644	0	ENST00000305921.3:c.1373G>A	p.Arg458Gln	p.R458Q	ENST00000305921	NM_003620.3	458	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0023211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	42	610	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
CIC	23152	MSKCC	GRCh37	19	42796882	42796883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	45	961	7	ENST00000575354.2:c.3347dupC	p.Ser1117LysfsTer34	p.S1117Kfs*34	ENST00000575354	NM_015125.3	1114	gcc/gCcc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106626	27106626	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	49	700	1	ENST00000324856.7:c.6237del	p.Ser2079ArgfsTer56	p.S2079Rfs*56	ENST00000324856	NM_006015.4	2079	agC/ag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579539	7579540	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0023211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	17	851	0	ENST00000269305.4:c.147_148insCA	p.Ile50GlnfsTer74	p.I50Qfs*74	ENST00000269305	NM_001126112.2	49	-/CA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591821	48591821	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	36	539	0	ENST00000342988.3:c.984C>A	p.Tyr328Ter	p.Y328*	ENST00000342988	NM_005359.5	328	taC/taA																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005681	150005681	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0023211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	24	357	0	ENST00000253339.5:c.544A>T	p.Lys182Ter	p.K182*	ENST00000253339		182	Aaa/Taa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057744	180057744	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138831198		P-0023318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	182	767	1	ENST00000261937.6:c.211G>A	p.Gly71Arg	p.G71R	ENST00000261937	NM_182925.4	71	Gga/Aga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65303755	65303755	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	137	704	0	ENST00000342505.4:c.3000del	p.His1001ThrfsTer17	p.H1001Tfs*17	ENST00000342505	NM_002227.2	1000	gtT/gt																																																																															
BIRC3	330	MSKCC	GRCh37	11	102207682	102207682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	94	524	0	ENST00000263464.3:c.1664G>T	p.Arg555Ile	p.R555I	ENST00000263464	NM_001165.4	555	aGa/aTa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78796979	78796980	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTCA			P-0023318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	128	756	0	ENST00000306801.3:c.1094_1097dup	p.Ser367GlnfsTer22	p.S367Qfs*22	ENST00000306801	NM_020761.2	364	-/GTCA																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495646	72495646	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0023318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	112	503	0	ENST00000477973.2:c.423+1del		p.X141_splice	ENST00000477973	NM_012234.5	141																																																																																
STAG2	10735	MSKCC	GRCh37	X	123185061	123185061	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	9	393	0	ENST00000218089.9:c.1108C>G	p.Arg370Gly	p.R370G	ENST00000218089	NM_001042749.1	370	Cgg/Ggg																																																																															
ATM	472	MSKCC	GRCh37	11	108173715	108173716	+	missense_variant	Missense_Mutation	DNP	AC	AC	CA			P-0023321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	183	873	0	ENST00000278616.4:c.5455_5456delinsCA	p.Thr1819Gln	p.T1819Q	ENST00000278616	NM_000051.3	1819	ACa/CAa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46215243	46215264	+	frameshift_variant	Frame_Shift_Del	DEL	AGAGAAGACTGATAGAGACTTC	AGAGAAGACTGATAGAGACTTC	-			P-0023321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	49	659	0	ENST00000334344.6:c.678_699del	p.Glu227LeufsTer58	p.E227Lfs*58	ENST00000334344	NM_152641.2	226	aaAGAGAAGACTGATAGAGACTTC/aa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061540	38061540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	162	472	0	ENST00000250448.2:c.449G>A	p.Arg150His	p.R150H	ENST00000250448	NM_004496.3	150	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	510	985	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096381	178096381	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1143	167	864	0	ENST00000397062.3:c.950T>G	p.Ile317Ser	p.I317S	ENST00000397062	NM_006164.4	317	aTt/aGt																																																																															
VEGFA	7422	MSKCC	GRCh37	6	43748554	43748554	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	227	782	0	ENST00000523873.1:c.508C>G	p.Arg170Gly	p.R170G	ENST00000523873		170	Cgc/Ggc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375003	118375004	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0023188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	148	470	0	ENST00000534358.1:c.8396_8397del	p.Ser2799PhefsTer29	p.S2799Ffs*29	ENST00000534358	NM_005933.3	2799	tCC/t																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112182	115112182	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	27	814	0	ENST00000257566.3:c.1558del	p.Leu520CysfsTer112	p.L520Cfs*112	ENST00000257566	NM_016569.3	520	Ctg/tg																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30134479	30134479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	52	558	0	ENST00000263025.4:c.52G>A	p.Glu18Lys	p.E18K	ENST00000263025	NM_002746.2	18	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68847244	68847245	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	58	690	0	ENST00000261769.5:c.1167dup	p.Asn390Ter	p.N390*	ENST00000261769	NM_004360.3	389	gct/gcTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	53	415	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	23	865	6	ENST00000269305.4:c.809T>C	p.Phe270Ser	p.F270S	ENST00000269305	NM_001126112.2	270	tTt/tCt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0023219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	91	721	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0023219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	114	725	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
ALK	238	MSKCC	GRCh37	2	29446207	29446207	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0023219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	43	446	0	ENST00000389048.3:c.3359+1G>T		p.X1120_splice	ENST00000389048	NM_004304.4	1120																																																																																
RAD54L	8438	MSKCC	GRCh37	1	46738475	46738475	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0023298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	151	619	3	ENST00000371975.4:c.1375+1G>A		p.X459_splice	ENST00000371975	NM_003579.3	459																																																																																
BMPR1A	657	MSKCC	GRCh37	10	88683229	88683229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	227	523	1	ENST00000372037.3:c.1439G>A	p.Arg480Gln	p.R480Q	ENST00000372037	NM_004329.2	480	cGg/cAg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481898	56481898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	343	791	0	ENST00000267101.3:c.826C>T	p.Pro276Ser	p.P276S	ENST00000267101	NM_001982.3	276	Ccc/Tcc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	312	756	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349121	11349121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	26	456	0	ENST00000332029.2:c.215C>A	p.Ala72Glu	p.A72E	ENST00000332029	NM_003745.1	72	gCg/gAg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879794	37879794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	93	537	0	ENST00000269571.5:c.2089G>A	p.Val697Met	p.V697M	ENST00000269571		697	Gtg/Atg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70118866	70118876	+	frameshift_variant	Frame_Shift_Del	DEL	GAACGAGAGCG	GAACGAGAGCG	-			P-0023298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	94	562	0	ENST00000245479.2:c.438_448del	p.Asn147GlufsTer101	p.N147Efs*101	ENST00000245479	NM_000346.3	146	ctGAACGAGAGCGag/ctag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119762	70119763	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	122	771	0	ENST00000245479.2:c.768dup	p.Arg257AlafsTer39	p.R257Afs*39	ENST00000245479	NM_000346.3	255	gag/gaGg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211138	36211138	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	215	977	2	ENST00000222270.7:c.889C>T	p.Arg297Ter	p.R297*	ENST00000222270	NM_014727.1	297	Cga/Tga																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085659	16085659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	204	784	0	ENST00000281043.3:c.835G>A	p.Val279Met	p.V279M	ENST00000281043	NM_005378.4	279	Gtg/Atg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713544	30713546	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0023298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	264	575	0	ENST00000359013.4:c.946_948delAAG	p.Lys316del	p.K316del	ENST00000359013	NM_001024847.2	315	gAGAag/gag																																																																															
TET2	54790	MSKCC	GRCh37	4	106156059	106156678	+	frameshift_variant	Frame_Shift_Del	DEL	ACAACTACAACAACAAAAATCAGTTTTTGAGATATGCCCATCTCCTGCAGAAAATAACATCCAGGGAACCACAAAGCTAGCGTCTGGTGAAGAATTCTGTTCAGGTTCCAGCAGCAATTTGCAAGCTCCTGGTGGCAGCTCTGAACGGTATTTAAAACAAAATGAAATGAATGGTGCTTACTTCAAGCAAAGCTCAGTGTTCACTAAGGATTCCTTTTCTGCCACTACCACACCACCACCACCATCACAATTGCTTCTTTCTCCCCCTCCTCCTCTTCCACAGGTTCCTCAGCTTCCTTCAGAAGGAAAAAGCACTCTGAATGGTGGAGTTTTAGAAGAACACCACCACTACCCCAACCAAAGTAACACAACACTTTTAAGGGAAGTGAAAATAGAGGGTAAACCTGAGGCACCACCTTCCCAGAGTCCTAATCCATCTACACATGTATGCAGCCCTTCTCCGATGCTTTCTGAAAGGCCTCAGAATAATTGTGTGAACAGGAATGACATACAGACTGCAGGGACAATGACTGTTCCATTGTGTTCTGAGAAAACAAGACCAATGTCAGAACACCTCAAGCATAACCCACCAATTTTTGGTAGCAGTGGAGAGCTACAGG	ACAACTACAACAACAAAAATCAGTTTTTGAGATATGCCCATCTCCTGCAGAAAATAACATCCAGGGAACCACAAAGCTAGCGTCTGGTGAAGAATTCTGTTCAGGTTCCAGCAGCAATTTGCAAGCTCCTGGTGGCAGCTCTGAACGGTATTTAAAACAAAATGAAATGAATGGTGCTTACTTCAAGCAAAGCTCAGTGTTCACTAAGGATTCCTTTTCTGCCACTACCACACCACCACCACCATCACAATTGCTTCTTTCTCCCCCTCCTCCTCTTCCACAGGTTCCTCAGCTTCCTTCAGAAGGAAAAAGCACTCTGAATGGTGGAGTTTTAGAAGAACACCACCACTACCCCAACCAAAGTAACACAACACTTTTAAGGGAAGTGAAAATAGAGGGTAAACCTGAGGCACCACCTTCCCAGAGTCCTAATCCATCTACACATGTATGCAGCCCTTCTCCGATGCTTTCTGAAAGGCCTCAGAATAATTGTGTGAACAGGAATGACATACAGACTGCAGGGACAATGACTGTTCCATTGTGTTCTGAGAAAACAAGACCAATGTCAGAACACCTCAAGCATAACCCACCAATTTTTGGTAGCAGTGGAGAGCTACAGG	-			P-0023298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	78	466	0	ENST00000380013.4:c.966_1585del	p.Gln323ProfsTer37	p.Q323Pfs*37	ENST00000380013	NM_001127208.2	320	gaACAACTACAACAACAAAAATCAGTTTTTGAGATATGCCCATCTCCTGCAGAAAATAACATCCAGGGAACCACAAAGCTAGCGTCTGGTGAAGAATTCTGTTCAGGTTCCAGCAGCAATTTGCAAGCTCCTGGTGGCAGCTCTGAACGGTATTTAAAACAAAATGAAATGAATGGTGCTTACTTCAAGCAAAGCTCAGTGTTCACTAAGGATTCCTTTTCTGCCACTACCACACCACCACCACCATCACAATTGCTTCTTTCTCCCCCTCCTCCTCTTCCACAGGTTCCTCAGCTTCCTTCAGAAGGAAAAAGCACTCTGAATGGTGGAGTTTTAGAAGAACACCACCACTACCCCAACCAAAGTAACACAACACTTTTAAGGGAAGTGAAAATAGAGGGTAAACCTGAGGCACCACCTTCCCAGAGTCCTAATCCATCTACACATGTATGCAGCCCTTCTCCGATGCTTTCTGAAAGGCCTCAGAATAATTGTGTGAACAGGAATGACATACAGACTGCAGGGACAATGACTGTTCCATTGTGTTCTGAGAAAACAAGACCAATGTCAGAACACCTCAAGCATAACCCACCAATTTTTGGTAGCAGTGGAGAGCTACAGGac/gaac																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249456	153249456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	285	802	0	ENST00000281708.4:c.1322G>A	p.Arg441Gln	p.R441Q	ENST00000281708	NM_033632.3	441	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175352	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0023298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	133	360	0	ENST00000257430.4:c.4062_4063del	p.Ser1355PhefsTer19	p.S1355Ffs*19	ENST00000257430	NM_000038.5	1354	TTt/t																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323364	31323364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	167	485	0	ENST00000412585.2:c.625C>T	p.Pro209Ser	p.P209S	ENST00000412585	NM_005514.6	209	Cca/Tca																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128201212	128201212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	238	830	2	ENST00000265960.3:c.1523G>A	p.Arg508His	p.R508H	ENST00000265960	NM_001006617.1	508	cGt/cAt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041259	47041259	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	178	906	0	ENST00000329236.7:c.1453C>T	p.Gln485Ter	p.Q485*	ENST00000329236	NM_001204466.1	485	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0023253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	207	710	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs137853076		P-0023253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	400	835	1	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag																																																																															
MGA	23269	MSKCC	GRCh37	15	42040903	42040903	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	177	711	1	ENST00000219905.7:c.5281C>T	p.Arg1761Ter	p.R1761*	ENST00000219905	NM_001164273.1	1761	Cga/Tga																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245582	46245582	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	132	419	0	ENST00000334344.6:c.3676G>T	p.Gly1226Ter	p.G1226*	ENST00000334344	NM_152641.2	1226	Gga/Tga																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89335043	89335043	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	53	342	0	ENST00000301030.4:c.7835A>G	p.Glu2612Gly	p.E2612G	ENST00000301030	NM_001256183.1	2612	gAg/gGg																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713574	30713574	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	110	537	0	ENST00000359013.4:c.974A>C	p.Lys325Thr	p.K325T	ENST00000359013	NM_001024847.2	325	aAg/aCg																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176523645	176523645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	119	838	0	ENST00000292408.4:c.2056G>T	p.Gly686Trp	p.G686W	ENST00000292408	NM_213647.1	686	Ggg/Tgg																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127933445	127933445	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	146	641	0	ENST00000373547.4:c.90C>A	p.Tyr30Ter	p.Y30*	ENST00000373547	NM_002721.4	30	taC/taA																																																																															
ARAF	369	MSKCC	GRCh37	X	47426704	47426704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	44	765	1	ENST00000377045.4:c.949G>T	p.Gly317Trp	p.G317W	ENST00000377045	NM_001654.4	317	Ggg/Tgg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426710	47426710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	44	748	2	ENST00000377045.4:c.955G>T	p.Gly319Cys	p.G319C	ENST00000377045	NM_001654.4	319	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	72	749	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	68	859	1	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430245	181430245	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	53	483	0	ENST00000325404.1:c.97A>C	p.Asn33His	p.N33H	ENST00000325404	NM_003106.3	33	Aac/Cac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039904	47039904	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	63	420	0	ENST00000329236.7:c.1013A>T	p.Gln338Leu	p.Q338L	ENST00000329236	NM_001204466.1	338	cAg/cTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845234	151845234	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199858308		P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	87	578	0	ENST00000262189.6:c.13778A>G	p.Asn4593Ser	p.N4593S	ENST00000262189	NM_170606.2	4593	aAt/aGt																																																																															
TET1	80312	MSKCC	GRCh37	10	70405285	70405285	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	46	653	0	ENST00000373644.4:c.2799C>G	p.Ile933Met	p.I933M	ENST00000373644	NM_030625.2	933	atC/atG																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639647	3639647	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	136	1071	1	ENST00000294008.3:c.3992G>T	p.Gly1331Val	p.G1331V	ENST00000294008	NM_032444.2	1331	gGa/gTa																																																																															
NF1	4763	MSKCC	GRCh37	17	29552152	29552152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	37	405	0	ENST00000358273.4:c.1885G>T	p.Gly629Trp	p.G629W	ENST00000358273	NM_001042492.2	629	Ggg/Tgg																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546618	9546620	+	frameshift_variant	Frame_Shift_Del	DEL	CTC	CTC	TT			P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	70	711	1	ENST00000353224.5:c.1402_1404delinsAA	p.Glu468LysfsTer10	p.E468Kfs*10	ENST00000353224	NM_177990.2	468	GAG/AA																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081681	143081681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	66	422	0	ENST00000262992.4:c.1393C>A	p.Leu465Ile	p.L465I	ENST00000262992	NM_001101669.1	465	Ctt/Att																																																																															
NBN	4683	MSKCC	GRCh37	8	90983481	90983481	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	26	555	0	ENST00000265433.3:c.622A>C	p.Lys208Gln	p.K208Q	ENST00000265433	NM_002485.4	208	Aaa/Caa																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300086	137300086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199797293		P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	70	914	0	ENST00000481739.1:c.371C>T	p.Ser124Leu	p.S124L	ENST00000481739	NM_002957.4	124	tCa/tTa																																																																															
ARAF	369	MSKCC	GRCh37	X	47430386	47430386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	49	397	0	ENST00000377045.4:c.1661G>T	p.Arg554Leu	p.R554L	ENST00000377045	NM_001654.4	554	cGg/cTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	48	474	1	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	211	566	1	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	100	567	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
TET2	54790	MSKCC	GRCh37	4	106158447	106158447	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	58	342	0	ENST00000380013.4:c.3353del	p.Asn1118IlefsTer19	p.N1118Ifs*19	ENST00000380013	NM_001127208.2	1116	atA/at																																																																															
RB1	5925	MSKCC	GRCh37	13	48878061	48878062	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	343	289	0	ENST00000267163.4:c.19dup	p.Arg7ProfsTer24	p.R7Pfs*24	ENST00000267163	NM_000321.2	5	acc/aCcc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	124	250	6	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	392	684	4	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	97	491	19	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024636	31024637	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	266	613	0	ENST00000375687.4:c.4127dup	p.Pro1377SerfsTer3	p.P1377Sfs*3	ENST00000375687	NM_015338.5	1374	gtg/gtGg																																																																															
FANCA	2175	MSKCC	GRCh37	16	89857867	89857867	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148473140		P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	387	761	0	ENST00000389301.3:c.1303C>T	p.Arg435Cys	p.R435C	ENST00000389301	NM_000135.2	435	Cgc/Tgc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	171	785	4	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609331	81609331	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139286618		P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	31	360	2	ENST00000298171.2:c.929G>A	p.Arg310His	p.R310H	ENST00000298171	NM_000369.2	310	cGc/cAc																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564667	86564667	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	352	721	1	ENST00000274376.6:c.402del	p.Pro136LeufsTer38	p.P136Lfs*38	ENST00000274376	NM_002890.2	133	ggT/gg																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073803	8073804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	76	335	0	ENST00000377482.5:c.855dupC	p.Arg286GlnfsTer7	p.R286Qfs*7	ENST00000377482	NM_018948.3	285	-/C																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518503	204518503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	131	366	0	ENST00000367182.3:c.1166G>A	p.Cys389Tyr	p.C389Y	ENST00000367182	NM_001278516.1	389	tGc/tAc																																																																															
SESN3	143686	MSKCC	GRCh37	11	94911882	94911882	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	233	709	0	ENST00000536441.1:c.1048C>T	p.Arg350Ter	p.R350*	ENST00000536441	NM_144665.3	350	Cga/Tga																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435156	49435156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	237	467	0	ENST00000301067.7:c.6397del	p.Ala2133ProfsTer11	p.A2133Pfs*11	ENST00000301067	NM_003482.3	2133	Gcc/cc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860152	57860152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	166	668	0	ENST00000228682.2:c.892G>A	p.Glu298Lys	p.E298K	ENST00000228682	NM_005269.2	298	Gag/Aag																																																																															
CBFB	865	MSKCC	GRCh37	16	67070578	67070578	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	61	381	0	ENST00000412916.2:c.207del	p.Pro70ArgfsTer19	p.P70Rfs*19	ENST00000412916		68	Ttt/tt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830309	72830309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	152	391	0	ENST00000268489.5:c.6272C>T	p.Pro2091Leu	p.P2091L	ENST00000268489	NM_006885.3	2091	cCg/cTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577143	7577144	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	294	585	0	ENST00000269305.4:c.794dup	p.Arg267ThrfsTer5	p.R267Tfs*5	ENST00000269305	NM_001126112.2	265	ctg/ctTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353896	15353896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	105	590	0	ENST00000263377.2:c.2984G>A	p.Arg995Gln	p.R995Q	ENST00000263377	NM_058243.2	995	cGg/cAg																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308171	30308171	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	161	663	1	ENST00000262643.3:c.311del	p.Pro104ArgfsTer5	p.P104Rfs*5	ENST00000262643	NM_001238.2	103	tCc/tc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719795	190719796	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	61	467	0	ENST00000441310.2:c.1797_1798delinsAT	p.Asp600Tyr	p.D600Y	ENST00000441310	NM_000534.4	599	gaGGat/gaATat																																																																															
NF2	4771	MSKCC	GRCh37	22	30067828	30067828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	230	376	0	ENST00000338641.4:c.1013G>A	p.Arg338His	p.R338H	ENST00000338641	NM_000268.3	338	cGc/cAc																																																																															
MLH1	4292	MSKCC	GRCh37	3	37045890	37045890	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	12	615	0	ENST00000231790.2:c.307-2A>G		p.X103_splice	ENST00000231790	NM_000249.3	103																																																																																
MLH1	4292	MSKCC	GRCh37	3	37061799	37061799	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	193	519	0	ENST00000231790.2:c.885-2A>T		p.X295_splice	ENST00000231790	NM_000249.3	295																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153247172	153247173	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	127	403	0	ENST00000281708.4:c.1629_1630del	p.Arg543SerfsTer7	p.R543Sfs*7	ENST00000281708	NM_033632.3	543	agAGtc/agtc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161786	56161786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	221	587	0	ENST00000399503.3:c.1283C>T	p.Thr428Met	p.T428M	ENST00000399503	NM_005921.1	428	aCg/aTg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265545	152265545	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	219	582	0	ENST00000206249.3:c.998C>A	p.Pro333His	p.P333H	ENST00000206249	NM_000125.3	333	cCt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	388	740	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579582	7579583	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	123	669	0	ENST00000269305.4:c.104dup	p.Leu35PhefsTer8	p.L35Ffs*8	ENST00000269305	NM_001126112.2	35	ttg/ttTg																																																																															
STK19	8859	MSKCC	GRCh37	6	31939981	31939981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	142	572	1	ENST00000375331.2:c.208G>A	p.Gly70Arg	p.G70R	ENST00000375331	NM_004197.1	70	Gga/Aga																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593460	48593461	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	98	519	0	ENST00000342988.3:c.1213dup	p.His405ProfsTer24	p.H405Pfs*24	ENST00000342988	NM_005359.5	404	gac/gaCc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509624	106509624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	91	586	0	ENST00000359195.3:c.1618G>A	p.Gly540Arg	p.G540R	ENST00000359195	NM_002649.2	540	Ggg/Agg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	63	499	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KDM5A	5927	MSKCC	GRCh37	12	475218	475218	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	66	1045	0	ENST00000399788.2:c.419C>G	p.Ser140Cys	p.S140C	ENST00000399788	NM_001042603.1	140	tCt/tGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822357	72822357	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0023054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	64	1134	0	ENST00000268489.5:c.9818C>G	p.Ser3273Ter	p.S3273*	ENST00000268489	NM_006885.3	3273	tCa/tGa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151917610	151917610	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	75	938	1	ENST00000262189.6:c.3710G>A	p.Arg1237Gln	p.R1237Q	ENST00000262189	NM_170606.2	1237	cGa/cAa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522551	176522551	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774571806		P-0023118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	8	793	2	ENST00000292408.4:c.1648G>A	p.Val550Met	p.V550M	ENST00000292408	NM_213647.1	550	Gtg/Atg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	234	1016	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	109	326	0	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																																																															
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0023122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	26	623	0	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115955	8115956	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	110	484	0	ENST00000346208.3:c.1301_1302insT	p.Ser436LeufsTer71	p.S436Lfs*71	ENST00000346208		434	cac/caTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	55	722	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0022997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	85	863	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
APC	324	MSKCC	GRCh37	5	112174086	112174086	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	55	561	0	ENST00000257430.4:c.2795C>A	p.Ser932Ter	p.S932*	ENST00000257430	NM_000038.5	932	tCa/tAa																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15299983	15299983	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	114	805	0	ENST00000263388.2:c.1195G>A	p.Ala399Thr	p.A399T	ENST00000263388	NM_000435.2	399	Gcc/Acc																																																																															
TP63	8626	MSKCC	GRCh37	3	189612101	189612101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	194	808	1	ENST00000264731.3:c.1853G>A	p.Arg618Gln	p.R618Q	ENST00000264731	NM_003722.4	618	cGg/cAg																																																																															
CDK12	51755	MSKCC	GRCh37	17	37619281	37619281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0023060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	147	512	0	ENST00000447079.4:c.957C>G	p.Tyr319Ter	p.Y319*	ENST00000447079	NM_015083.1	319	taC/taG																																																																															
NUF2	83540	MSKCC	GRCh37	1	163306556	163306556	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	64	683	1	ENST00000271452.3:c.353G>T	p.Ser118Ile	p.S118I	ENST00000271452	NM_145697.2	118	aGt/aTt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37667825	37667825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	84	590	1	ENST00000447079.4:c.2710C>T	p.Pro904Ser	p.P904S	ENST00000447079	NM_015083.1	904	Cca/Tca																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	23	349	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	19	430	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65339111	65339111	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	25	521	4	ENST00000342505.4:c.425delA	p.Lys142ArgfsTer26	p.K142Rfs*26	ENST00000342505	NM_002227.2	142	aAg/ag																																																																															
RAD50	10111	MSKCC	GRCh37	5	131915673	131915673	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28903088		P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	17	392	0	ENST00000265335.6:c.671G>A	p.Arg224His	p.R224H	ENST00000265335		224	cGt/cAt																																																																															
TCF3	6929	MSKCC	GRCh37	19	1623969	1623969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147142249		P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	81	595	0	ENST00000344749.5:c.530C>T	p.Pro177Leu	p.P177L	ENST00000344749	NM_001136139.2	177	cCg/cTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272201	15272201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	43	624	0	ENST00000263388.2:c.6238C>T	p.Arg2080Trp	p.R2080W	ENST00000263388	NM_000435.2	2080	Cgg/Tgg																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348230	348230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	27	825	0	ENST00000262320.3:c.1276G>A	p.Asp426Asn	p.D426N	ENST00000262320	NM_003502.3	426	Gat/Aat																																																																															
LATS1	9113	MSKCC	GRCh37	6	149982885	149982885	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139248642		P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	10	411	0	ENST00000253339.5:c.3373C>T	p.Arg1125Cys	p.R1125C	ENST00000253339		1125	Cgc/Tgc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619849	1619849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	25	742	0	ENST00000344749.5:c.1097C>T	p.Thr366Met	p.T366M	ENST00000344749	NM_001136139.2	366	aCg/aTg																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81944250	81944250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147396004		P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	102	710	2	ENST00000359376.3:c.1859C>T	p.Thr620Met	p.T620M	ENST00000359376	NM_002661.3	620	aCg/aTg																																																																															
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	18	481	0	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																															
XPO1	7514	MSKCC	GRCh37	2	61721099	61721099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	29	517	0	ENST00000401558.2:c.1175C>T	p.Pro392Leu	p.P392L	ENST00000401558	NM_003400.3	392	cCg/cTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992720	68992721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs774202059		P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	17	655	11	ENST00000288368.4:c.1693dup	p.Ser565PhefsTer3	p.S565Ffs*3	ENST00000288368	NM_024870.2	562	cgt/cgTt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262433	16262433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	24	280	0	ENST00000375759.3:c.9698C>T	p.Ala3233Val	p.A3233V	ENST00000375759	NM_015001.2	3233	gCt/gTt																																																																															
NUF2	83540	MSKCC	GRCh37	1	163306549	163306549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	25	406	1	ENST00000271452.3:c.346C>T	p.Arg116Trp	p.R116W	ENST00000271452	NM_145697.2	116	Cgg/Tgg																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63816910	63816910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	19	170	0	ENST00000279873.7:c.881C>T	p.Pro294Leu	p.P294L	ENST00000279873	NM_032199.2	294	cCg/cTg																																																																															
CCND1	595	MSKCC	GRCh37	11	69465978	69465978	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	78	824	1	ENST00000227507.2:c.816G>T	p.Glu272Asp	p.E272D	ENST00000227507	NM_053056.2	272	gaG/gaT																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231383	46231383	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	17	399	0	ENST00000334344.6:c.1223C>A	p.Thr408Asn	p.T408N	ENST00000334344	NM_152641.2	408	aCt/aAt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88669523	88669523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	17	458	0	ENST00000360948.2:c.1375C>T	p.Arg459Trp	p.R459W	ENST00000360948	NM_001012338.2	459	Cgg/Tgg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779091	3779091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	14	576	0	ENST00000262367.5:c.5957C>T	p.Thr1986Met	p.T1986M	ENST00000262367	NM_004380.2	1986	aCg/aTg																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619412	1619412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	40	929	1	ENST00000344749.5:c.1229G>A	p.Gly410Asp	p.G410D	ENST00000344749	NM_001136139.2	410	gGc/gAc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753795	42753795	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	110	924	0	ENST00000222329.4:c.469G>T	p.Glu157Ter	p.E157*	ENST00000222329	NM_006494.2	157	Gag/Tag																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082775	16082775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	35	216	2	ENST00000281043.3:c.589G>A	p.Val197Met	p.V197M	ENST00000281043	NM_005378.4	197	Gtg/Atg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469085	25469085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	85	805	0	ENST00000264709.3:c.1373G>A	p.Arg458Gln	p.R458Q	ENST00000264709	NM_175629.2	458	cGg/cAg																																																																															
ALK	238	MSKCC	GRCh37	2	29940499	29940499	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	18	494	0	ENST00000389048.3:c.732T>A	p.Asn244Lys	p.N244K	ENST00000389048	NM_004304.4	244	aaT/aaA																																																																															
PMS1	5378	MSKCC	GRCh37	2	190660633	190660633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	26	285	0	ENST00000441310.2:c.271G>A	p.Gly91Ser	p.G91S	ENST00000441310	NM_000534.4	91	Ggt/Agt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162989	47162989	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	15	368	0	ENST00000409792.3:c.3137A>G	p.Asn1046Ser	p.N1046S	ENST00000409792	NM_014159.6	1046	aAt/aGt																																																																															
RYBP	23429	MSKCC	GRCh37	3	72427778	72427778	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	35	237	0	ENST00000477973.2:c.710A>G	p.Lys238Glu	p.K238E	ENST00000477973	NM_012234.5	238	Aaa/Gaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628344	187628344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199836705		P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	64	680	4	ENST00000441802.2:c.2638G>A	p.Ala880Thr	p.A880T	ENST00000441802	NM_005245.3	880	Gca/Aca																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858314	27858314	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	103	518	0	ENST00000359303.2:c.257A>G	p.Gln86Arg	p.Q86R	ENST00000359303	NM_003535.2	86	cAg/cGg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168953	32168953	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	79	866	2	ENST00000375023.3:c.4080G>T	p.Gln1360His	p.Q1360H	ENST00000375023	NM_004557.3	1360	caG/caT																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170102	32170102	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	80	769	0	ENST00000375023.3:c.3506G>T	p.Arg1169Leu	p.R1169L	ENST00000375023	NM_004557.3	1169	cGg/cTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859589	151859589	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	24	439	0	ENST00000262189.6:c.11073A>C	p.Gln3691His	p.Q3691H	ENST00000262189	NM_170606.2	3691	caA/caC																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98218678	98218679	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	39	373	0	ENST00000331920.6:c.3185_3186delinsCT	p.Leu1062Pro	p.L1062P	ENST00000331920	NM_000264.3	1062	cTG/cCT																																																																															
RXRA	6256	MSKCC	GRCh37	9	137309018	137309018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	63	768	2	ENST00000481739.1:c.625C>T	p.Arg209Trp	p.R209W	ENST00000481739	NM_002957.4	209	Cgg/Tgg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151842283	151842283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	43	658	0	ENST00000262189.6:c.14129G>A	p.Arg4710His	p.R4710H	ENST00000262189	NM_170606.2	4710	cGt/cAt																																																																															
CDH1	999	MSKCC	GRCh37	16	68772225	68772226	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	259	1087	0	ENST00000261769.5:c.76dup	p.Glu26GlyfsTer8	p.E26Gfs*8	ENST00000261769	NM_004360.3	25	ccg/ccGg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178351	56178384	+	frameshift_variant	Frame_Shift_Del	DEL	TGACGAGACAGTGTTCACCCCAGTAGAGGAGAAA	TGACGAGACAGTGTTCACCCCAGTAGAGGAGAAA	-			P-0023127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	326	544	0	ENST00000399503.3:c.3326_3359del	p.Asp1109AlafsTer3	p.D1109Afs*3	ENST00000399503	NM_005921.1	1108	agTGACGAGACAGTGTTCACCCCAGTAGAGGAGAAA/ag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012269	152012269	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	485	864	0	ENST00000262189.6:c.544G>T	p.Glu182Ter	p.E182*	ENST00000262189	NM_170606.2	182	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0023057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	125	453	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0023057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	465	1061	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
ATM	472	MSKCC	GRCh37	11	108098533	108098533	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	209	461	2	ENST00000278616.4:c.103C>T	p.Arg35Ter	p.R35*	ENST00000278616	NM_000051.3	35	Cga/Tga																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926270	112926270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	257	687	2	ENST00000351677.2:c.1403C>T	p.Thr468Met	p.T468M	ENST00000351677	NM_002834.3	468	aCg/aTg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572188	64572188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	68	745	1	ENST00000337652.1:c.1466G>A	p.Arg489Gln	p.R489Q	ENST00000337652	NM_130803.2	489	cGg/cAg																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170015175	170015175	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	51	737	0	ENST00000295797.4:c.1581G>A	p.Trp527Ter	p.W527*	ENST00000295797	NM_002740.5	527	tgG/tgA																																																																															
MET	4233	MSKCC	GRCh37	7	116339193	116339193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	92	368	0	ENST00000397752.3:c.55G>A	p.Val19Met	p.V19M	ENST00000397752	NM_000245.2	19	Gtg/Atg																																																																															
ABL1	25	MSKCC	GRCh37	9	133750430	133750430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	159	737	1	ENST00000318560.5:c.1261G>A	p.Asp421Asn	p.D421N	ENST00000318560	NM_005157.4	421	Gac/Aac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041391	47041391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	168	647	0	ENST00000329236.7:c.1501G>A	p.Gly501Ser	p.G501S	ENST00000329236	NM_001204466.1	501	Ggc/Agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0023014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	256	770	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9525116	9525116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	217	583	0	ENST00000353224.5:c.1769G>T	p.Cys590Phe	p.C590F	ENST00000353224	NM_177990.2	590	tGt/tTt																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14317322	14317322	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	111	675	0	ENST00000256196.4:c.188G>C	p.Arg63Pro	p.R63P	ENST00000256196		63	cGg/cCg																																																																															
STK11	6794	MSKCC	GRCh37	19	1218431	1218436	+	inframe_deletion	In_Frame_Del	DEL	GAGGAG	GAGGAG	-			P-0023014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	353	821	0	ENST00000326873.7:c.307_312del	p.Arg103_Arg104del	p.R103_R104del	ENST00000326873	NM_000455.4	102	ctGAGGAGg/ctg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599944	10599944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	441	915	0	ENST00000171111.5:c.1632G>T	p.Trp544Cys	p.W544C	ENST00000171111	NM_203500.1	544	tgG/tgT																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0023051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	46	609	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0023051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	57	983	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194718	29194718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	51	1125	0	ENST00000240100.2:c.1010C>T	p.Thr337Met	p.T337M	ENST00000240100	NM_001394.6	337	aCg/aTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0023046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	224	503	1	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0023046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	93	360	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																																
MED12	9968	MSKCC	GRCh37	X	70356239	70356239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	39	399	0	ENST00000374080.3:c.5134C>T	p.Arg1712Trp	p.R1712W	ENST00000374080		1712	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0023049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	639	826	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100532	157100532	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	423	433	0	ENST00000346085.5:c.1469G>A	p.Trp490Ter	p.W490*	ENST00000346085	NM_020732.3	490	tGg/tAg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030329	180030329	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142322370		P-0023049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	189	965	1	ENST00000261937.6:c.3955C>T	p.Arg1319Trp	p.R1319W	ENST00000261937	NM_182925.4	1319	Cgg/Tgg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117874164	117874164	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	54	561	0	ENST00000297338.2:c.290C>G	p.Pro97Arg	p.P97R	ENST00000297338	NM_006265.2	97	cCt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	41	759	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0023044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	19	912	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56480320	56480320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	36	485	0	ENST00000267101.3:c.427C>A	p.Leu143Met	p.L143M	ENST00000267101	NM_001982.3	143	Ctg/Atg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267359	198267359	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	11	689	6	ENST00000335508.6:c.1998G>C	p.Lys666Asn	p.K666N	ENST00000335508	NM_012433.2	666	aaG/aaC																																																																															
APC	324	MSKCC	GRCh37	5	112176926	112176926	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	15	500	3	ENST00000257430.4:c.5635G>T	p.Ala1879Ser	p.A1879S	ENST00000257430	NM_000038.5	1879	Gct/Tct																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30108080	30108080	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1239799730		P-0023044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	30	901	1	ENST00000331968.5:c.727C>T	p.Arg243Ter	p.R243*	ENST00000331968	NM_002742.2	243	Cga/Tga																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16004864	16004864	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	11	771	0	ENST00000268712.3:c.2390A>T	p.Asp797Val	p.D797V	ENST00000268712	NM_006311.3	797	gAt/gTt																																																																															
CASP8	841	MSKCC	GRCh37	2	202151195	202151195	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	26	366	0	ENST00000358485.4:c.1495C>G	p.Leu499Val	p.L499V	ENST00000358485	NM_001080125.1	499	Ctc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578464	7578464	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1545	117	1260	0	ENST00000269305.4:c.466C>G	p.Arg156Gly	p.R156G	ENST00000269305	NM_001126112.2	156	Cgc/Ggc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	291	680	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	134	411	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	416	1014	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056648	26056648	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	39	194	0	ENST00000343677.2:c.9G>C	p.Glu3Asp	p.E3D	ENST00000343677	NM_005319.3	3	gaG/gaC																																																																															
PGR	5241	MSKCC	GRCh37	11	100998408	100998408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	129	397	0	ENST00000325455.5:c.1394C>T	p.Ala465Val	p.A465V	ENST00000325455	NM_001202474.3	465	gCg/gTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860126	57860126	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	329	1019	0	ENST00000228682.2:c.866T>G	p.Val289Gly	p.V289G	ENST00000228682	NM_005269.2	289	gTg/gGg																																																																															
RB1	5925	MSKCC	GRCh37	13	48937056	48937056	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	93	422	0	ENST00000267163.4:c.824A>C	p.Glu275Ala	p.E275A	ENST00000267163	NM_000321.2	275	gAa/gCa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10031928	10031928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	91	891	0	ENST00000330684.3:c.895C>A	p.Leu299Ile	p.L299I	ENST00000330684	NM_001134407.1	299	Cta/Ata																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210497	2210498	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	219	1175	2	ENST00000398665.3:c.1104_1105del	p.Asp369ArgfsTer8	p.D369Rfs*8	ENST00000398665	NM_032482.2	368	gcCGac/gcac																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610172	10610172	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	410	999	0	ENST00000171111.5:c.538del	p.Asp180ThrfsTer50	p.D180Tfs*50	ENST00000171111	NM_203500.1	180	Gac/ac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628488	187628488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	272	1204	0	ENST00000441802.2:c.2494A>C	p.Ser832Arg	p.S832R	ENST00000441802	NM_005245.3	832	Agt/Cgt																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0023160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	106	509	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																																
GATA3	2625	MSKCC	GRCh37	10	8115697	8115703	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTAGAT	TTTAGAT	-			P-0023160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	52	485	0	ENST00000346208.3:c.1048-4_1050del		p.X350_splice	ENST00000346208		350																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	23	928	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0023166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	26	883	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0023173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	41	238	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0023173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	53	270	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177433	56177434	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGT			P-0023173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	35	182	0	ENST00000399503.3:c.2408_2411dup	p.Ile805ValfsTer3	p.I805Vfs*3	ENST00000399503	NM_005921.1	802	-/CAGT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0023167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	79	967	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182509	99182509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	104	783	1	ENST00000074304.5:c.2312G>A	p.Arg771Gln	p.R771Q	ENST00000074304	NM_001134224.1	771	cGg/cAg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553506	106553506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	51	496	1	ENST00000369096.4:c.1471G>T	p.Ala491Ser	p.A491S	ENST00000369096	NM_001198.3	491	Gcg/Tcg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	216	727	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																																																															
AR	367	MSKCC	GRCh37	X	66931463	66931464	+	missense_variant	Missense_Mutation	DNP	TC	TC	AT			P-0023170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	141	452	0	ENST00000374690.3:c.2105_2106delinsAT	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTC/cAT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0023168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	14	919	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs764146326		P-0023168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	32	1054	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398255	25398255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	70	910	0	ENST00000256078.4:c.64C>A	p.Gln22Lys	p.Q22K	ENST00000256078	NM_033360.2	22	Cag/Aag																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038563	47038563	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0023168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	125	958	0	ENST00000329236.7:c.493+1G>T		p.X165_splice	ENST00000329236	NM_001204466.1	165																																																																																
MAP2K1	5604	MSKCC	GRCh37	15	66729181	66729181	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	75	977	0	ENST00000307102.5:c.389A>G	p.Tyr130Cys	p.Y130C	ENST00000307102	NM_002755.3	130	tAt/tGt																																																																															
RAF1	5894	MSKCC	GRCh37	3	12627284	12627284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	60	582	0	ENST00000251849.4:c.1432G>A	p.Glu478Lys	p.E478K	ENST00000251849	NM_002880.3	478	Gaa/Aaa																																																																															
FH	2271	MSKCC	GRCh37	1	241667422	241667422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	70	748	0	ENST00000366560.3:c.1028G>T	p.Arg343Leu	p.R343L	ENST00000366560	NM_000143.3	343	cGa/cTa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18658283	18658283	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	47	719	0	ENST00000266497.5:c.3088G>T	p.Gly1030Ter	p.G1030*	ENST00000266497		1030	Gga/Tga																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149449779	149449779	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	91	799	0	ENST00000286301.3:c.1285G>T	p.Val429Leu	p.V429L	ENST00000286301	NM_005211.3	429	Gtg/Ttg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553400	106553400	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	37	443	0	ENST00000369096.4:c.1365C>G	p.Ser455Arg	p.S455R	ENST00000369096	NM_001198.3	455	agC/agG																																																																															
AR	367	MSKCC	GRCh37	X	66765605	66765605	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	85	1173	0	ENST00000374690.3:c.617G>T	p.Ser206Ile	p.S206I	ENST00000374690	NM_000044.3	206	aGc/aTc																																																																															
MED12	9968	MSKCC	GRCh37	X	70347783	70347783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	107	667	0	ENST00000374080.3:c.3022G>T	p.Val1008Leu	p.V1008L	ENST00000374080		1008	Gtg/Ttg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0023158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	22	876	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164805	36164805	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015405-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			108	100	1066	1	ENST00000300305.3:c.1070delC	p.Pro357ArgfsTer237	p.P357Rfs*237	ENST00000300305		357	cCg/cg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115842	8115843	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015405-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			164	117	866	0	ENST00000346208.3:c.1189dup	p.Ser397PhefsTer110	p.S397Ffs*110	ENST00000346208		396	-/T																																																																															
TSC2	7249	MSKCC	GRCh37	16	2112992	2112992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015405-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			144	10	893	3	ENST00000219476.3:c.1381G>A	p.Val461Met	p.V461M	ENST00000219476	NM_000548.3	461	Gtg/Atg																																																																															
STK11	6794	MSKCC	GRCh37	19	1223079	1223079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015405-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			173	10	938	0	ENST00000326873.7:c.1016C>T	p.Pro339Leu	p.P339L	ENST00000326873	NM_000455.4	339	cCg/cTg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0023070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	25	627	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																															
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0023130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	298	793	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0023130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	205	583	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52723068	52723068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	141	605	2	ENST00000322088.6:c.1253G>A	p.Arg418Gln	p.R418Q	ENST00000322088	NM_014225.5	418	cGg/cAg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188590	11188590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	29	542	0	ENST00000361445.4:c.5831C>T	p.Ala1944Val	p.A1944V	ENST00000361445	NM_004958.3	1944	gCa/gTa																																																																															
ATR	545	MSKCC	GRCh37	3	142272559	142272559	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	238	792	0	ENST00000350721.4:c.2556A>T	p.Glu852Asp	p.E852D	ENST00000350721	NM_001184.3	852	gaA/gaT																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609993	81609993	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139892516		P-0023161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	109	325	0	ENST00000298171.2:c.1591C>T	p.Arg531Trp	p.R531W	ENST00000298171	NM_000369.2	531	Cgg/Tgg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164417	47164419	+	frameshift_variant	Frame_Shift_Del	DEL	TTA	TTA	AT			P-0023161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	61	371	0	ENST00000409792.3:c.1707_1709delinsAT	p.Phe569LeufsTer2	p.F569Lfs*2	ENST00000409792	NM_014159.6	569	ttTAAa/ttATa																																																																															
EGFR	1956	MSKCC	GRCh37	7	552424659	552424668	+		IGR	DEL	NNNNNNNNNN	NNNNNNNNNN	C			P-0023161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	610	154	0																																																																																						
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	144	730	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518184	103518184	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	70	398	0	ENST00000355739.4:c.2122G>T	p.Asp708Tyr	p.D708Y	ENST00000355739	NM_000123.3	708	Gac/Tac																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518732	103518732	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0023133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	30	445	0	ENST00000355739.4:c.2319+1G>T		p.X773_splice	ENST00000355739	NM_000123.3	773																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10599868	10599868	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	181	727	2	ENST00000171111.5:c.1708G>A	p.Gly570Arg	p.G570R	ENST00000171111	NM_203500.1	570	Gga/Aga																																																																															
ALK	238	MSKCC	GRCh37	2	29416698	29416698	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56181542		P-0023133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	161	628	0	ENST00000389048.3:c.4255G>A	p.Glu1419Lys	p.E1419K	ENST00000389048	NM_004304.4	1419	Gag/Aag																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643806	52643806	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	140	652	0	ENST00000394830.3:c.2090A>G	p.Tyr697Cys	p.Y697C	ENST00000394830	NM_018313.4	697	tAt/tGt																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808373	1808373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	405	1182	0	ENST00000260795.2:c.2131C>T	p.His711Tyr	p.H711Y	ENST00000260795		711	Cac/Tac																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589599	67589616	+	inframe_deletion	In_Frame_Del	DEL	TCAGTTTCAAGAAAAAAG	TCAGTTTCAAGAAAAAAG	-			P-0023133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	78	529	0	ENST00000274335.5:c.1364_1381del	p.Gln455_Ser460del	p.Q455_S460del	ENST00000274335		454	acTCAGTTTCAAGAAAAAAGt/act																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030493	47030493	+	intron_variant	Intron	SNP	C	C	T			P-0023133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	149	429	0	ENST00000329236.7:c.201+1596C>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0023009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	77	649	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0023009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	36	433	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0023009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	102	566	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573605	48573605	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	18	368	0	ENST00000342988.3:c.191del	p.Asn64MetfsTer30	p.N64Mfs*30	ENST00000342988	NM_005359.5	63	acA/ac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0023012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	225	867	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138521	11138521	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	226	1081	0	ENST00000344626.4:c.3277C>T	p.Arg1093Ter	p.R1093*	ENST00000344626	NM_003072.3	1093	Cga/Tga																																																																															
RET	5979	MSKCC	GRCh37	10	43615108	43615108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	262	1049	0	ENST00000355710.3:c.2522C>A	p.Pro841Gln	p.P841Q	ENST00000355710	NM_020975.4	841	cCg/cAg																																																																															
SESN3	143686	MSKCC	GRCh37	11	94918610	94918610	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	173	874	0	ENST00000536441.1:c.572T>C	p.Val191Ala	p.V191A	ENST00000536441	NM_144665.3	191	gTa/gCa																																																																															
ATM	472	MSKCC	GRCh37	11	108235833	108235833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	108	674	0	ENST00000278616.4:c.8875G>A	p.Asp2959Asn	p.D2959N	ENST00000278616	NM_000051.3	2959	Gac/Aac																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7989407	7989407	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	130	1040	0	ENST00000319144.4:c.279C>A	p.Asn93Lys	p.N93K	ENST00000319144	NM_001139.2	93	aaC/aaA																																																																															
STK11	6794	MSKCC	GRCh37	19	1221227	1221228	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0023012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	304	987	2	ENST00000326873.7:c.750_751delinsCT	p.Gly251Cys	p.G251C	ENST00000326873	NM_000455.4	250	acGGgt/acCTgt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713354	30713355	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	33	645	0	ENST00000359013.4:c.754_755insC	p.Ile252ThrfsTer19	p.I252Tfs*19	ENST00000359013	NM_001024847.2	252	atc/aCtc																																																																															
ATRX	546	MSKCC	GRCh37	X	76891404	76891404	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0023012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	125	574	0	ENST00000373344.5:c.4699+2T>G		p.X1567_splice	ENST00000373344	NM_000489.3	1567																																																																																
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0023013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	64	879	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	128	724	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KIT	3815	MSKCC	GRCh37	4	55593437	55593437	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55792975		P-0023013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	66	628	2	ENST00000288135.5:c.1594G>A	p.Val532Ile	p.V532I	ENST00000288135	NM_000222.2	532	Gta/Ata																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209489	98209489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	45	745	1	ENST00000331920.6:c.4049G>A	p.Arg1350Gln	p.R1350Q	ENST00000331920	NM_000264.3	1350	cGg/cAg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118941	115118942	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	48	452	0	ENST00000257566.3:c.399dup	p.Pro134SerfsTer4	p.P134Sfs*4	ENST00000257566	NM_016569.3	133	-/T																																																																															
CDH1	999	MSKCC	GRCh37	16	68842746	68842747	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0023135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	35	654	1	ENST00000261769.5:c.683dup	p.Tyr228Ter	p.Y228*	ENST00000261769	NM_004360.3	228	tac/tAac																																																																															
RAD50	10111	MSKCC	GRCh37	5	131944389	131944389	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	68	620	1	ENST00000265335.6:c.2801A>G	p.Asn934Ser	p.N934S	ENST00000265335		934	aAt/aGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061231	38061231	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	57	768	0	ENST00000250448.2:c.758T>C	p.Met253Thr	p.M253T	ENST00000250448	NM_004496.3	253	aTg/aCg																																																																															
APC	324	MSKCC	GRCh37	5	112175600	112175600	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	112	409	0	ENST00000257430.4:c.4312delA	p.Thr1438HisfsTer35	p.T1438Hfs*35	ENST00000257430	NM_000038.5	1437	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0023063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	123	447	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0023063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	234	780	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	306	888	0	ENST00000269305.4:c.731G>T	p.Gly244Val	p.G244V	ENST00000269305	NM_001126112.2	244	gGc/gTc																																																																															
E2F3	1871	MSKCC	GRCh37	6	20483132	20483132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	139	409	0	ENST00000346618.3:c.865G>A	p.Glu289Lys	p.E289K	ENST00000346618	NM_001949.4	289	Gag/Aag																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63759935	63759935	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	137	408	0	ENST00000279873.7:c.588T>G	p.Asp196Glu	p.D196E	ENST00000279873	NM_032199.2	196	gaT/gaG																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3823891	3823891	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	308	882	0	ENST00000262367.5:c.2324T>A	p.Met775Lys	p.M775K	ENST00000262367	NM_004380.2	775	aTg/aAg																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153271204	153271204	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	196	378	0	ENST00000281708.4:c.574G>T	p.Glu192Ter	p.E192*	ENST00000281708	NM_033632.3	192	Gaa/Taa																																																																															
SMO	6608	MSKCC	GRCh37	7	128851940	128851940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1212	317	780	0	ENST00000249373.3:c.2012G>A	p.Arg671Gln	p.R671Q	ENST00000249373	NM_005631.4	671	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0023004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	70	491	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	158	854	0	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946178	71946178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	96	900	0	ENST00000298229.2:c.2434G>A	p.Asp812Asn	p.D812N	ENST00000298229	NM_001567.3	812	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577122	7577122	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	164	856	2	ENST00000269305.4:c.816del	p.Arg273ValfsTer72	p.R273Vfs*72	ENST00000269305	NM_001126112.2	272	gtG/gt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0023157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	252	769	2	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0023157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	301	758	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851074	63851074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143074852		P-0023157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	127	649	0	ENST00000279873.7:c.1852G>A	p.Ala618Thr	p.A618T	ENST00000279873	NM_032199.2	618	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782596		P-0023157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	254	790	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																															
ATRX	546	MSKCC	GRCh37	X	76938407	76938407	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	102	974	1	ENST00000373344.5:c.2341C>T	p.Arg781Ter	p.R781*	ENST00000373344	NM_000489.3	781	Cga/Tga																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41267276	41267299	+	inframe_deletion	In_Frame_Del	DEL	ACAAAACAAATGTTAAATTCTTGG	ACAAAACAAATGTTAAATTCTTGG	-			P-0023157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	96	646	0	ENST00000349496.5:c.860_883del	p.Asn287_Ala295delinsThr	p.N287_A295delinsT	ENST00000349496	NM_001904.3	287	aACAAAACAAATGTTAAATTCTTGGct/act																																																																															
BCL6	604	MSKCC	GRCh37	3	187449639	187449639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	49	686	0	ENST00000232014.4:c.241G>A	p.Glu81Lys	p.E81K	ENST00000232014	NM_001130845.1	81	Gag/Aag																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443979	49443979	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201623566		P-0023159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	52	1005	1	ENST00000301067.7:c.3392C>T	p.Pro1131Leu	p.P1131L	ENST00000301067	NM_003482.3	1131	cCg/cTg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25497958	25497958	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0023159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	52	540	0	ENST00000264709.3:c.493-2A>C		p.X165_splice	ENST00000264709	NM_175629.2	165																																																																																
CXCR4	7852	MSKCC	GRCh37	2	136872533	136872533	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	27	370	0	ENST00000241393.3:c.965G>C	p.Arg322Thr	p.R322T	ENST00000241393	NM_003467.2	322	aGa/aCa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752883	57752883	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	70	577	0	ENST00000274289.3:c.1045C>G	p.His349Asp	p.H349D	ENST00000274289	NM_006622.3	349	Cat/Gat																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	224	790	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	217	850	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133523	55133523	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142492533		P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	66	685	1	ENST00000257290.5:c.827C>T	p.Thr276Met	p.T276M	ENST00000257290	NM_006206.4	276	aCg/aTg																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94212841	94212841	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	103	529	0	ENST00000323929.3:c.401G>A	p.Gly134Glu	p.G134E	ENST00000323929	NM_005591.3	134	gGg/gAg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910458	32910458	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	211	626	0	ENST00000380152.3:c.1966A>C	p.Thr656Pro	p.T656P	ENST00000380152		656	Act/Cct																																																																															
EZH1	2145	MSKCC	GRCh37	17	40854917	40854917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	170	763	1	ENST00000428826.2:c.2161G>A	p.Glu721Lys	p.E721K	ENST00000428826		721	Gaa/Aaa																																																																															
YES1	7525	MSKCC	GRCh37	18	742921	742921	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	75	653	0	ENST00000314574.4:c.1057A>C	p.Lys353Gln	p.K353Q	ENST00000314574	NM_005433.3	353	Aaa/Caa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31409377	31409377	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	66	676	0	ENST00000344624.3:c.3730T>C	p.Cys1244Arg	p.C1244R	ENST00000344624		1244	Tgc/Cgc																																																																															
APC	324	MSKCC	GRCh37	5	112174268	112174268	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	48	546	0	ENST00000257430.4:c.2978del	p.Lys993SerfsTer12	p.K993Sfs*12	ENST00000257430	NM_000038.5	993	Aag/ag																																																																															
APC	324	MSKCC	GRCh37	5	112175788	112175789	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	105	440	0	ENST00000257430.4:c.4500_4501dup	p.Ser1501PhefsTer7	p.S1501Ffs*7	ENST00000257430	NM_000038.5	1499	-/TT																																																																															
PARK2	5071	MSKCC	GRCh37	6	162622198	162622198	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	42	557	0	ENST00000366898.1:c.499A>G	p.Ser167Gly	p.S167G	ENST00000366898	NM_004562.2	167	Agc/Ggc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046299	69046299	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	48	485	0	ENST00000288368.4:c.3772G>T	p.Glu1258Ter	p.E1258*	ENST00000288368	NM_024870.2	1258	Gag/Tag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98242804	98242804	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	51	757	0	ENST00000331920.6:c.813A>G	p.Ile271Met	p.I271M	ENST00000331920	NM_000264.3	271	atA/atG																																																																															
AR	367	MSKCC	GRCh37	X	66765635	66765635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	26	434	0	ENST00000374690.3:c.647G>A	p.Gly216Glu	p.G216E	ENST00000374690	NM_000044.3	216	gGg/gAg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24143174	24143174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	88	647	0	ENST00000263121.7:c.406C>T	p.Pro136Ser	p.P136S	ENST00000263121	NM_003073.3	136	Ccc/Tcc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69129903	69129903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	20	420	1	ENST00000288368.4:c.4657G>A	p.Gly1553Arg	p.G1553R	ENST00000288368	NM_024870.2	1553	Gga/Aga																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241924	72241924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs552625764		P-0022953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	19	591	1	ENST00000357731.5:c.466G>A	p.Val156Ile	p.V156I	ENST00000357731	NM_173808.2	156	Gtc/Atc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49439704	49439704	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0022953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	43	628	0	ENST00000301067.7:c.4740del	p.Glu1581SerfsTer12	p.E1581Sfs*12	ENST00000301067	NM_003482.3	1580	ccA/cc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874710	151874710	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	51	491	1	ENST00000262189.6:c.7828C>T	p.Arg2610Ter	p.R2610*	ENST00000262189	NM_170606.2	2610	Cga/Tga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	245	606	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372080	55372080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	67	506	0	ENST00000297316.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000297316	NM_022454.3	257	tCg/tTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	273	907	0	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt																																																																															
CDH1	999	MSKCC	GRCh37	16	68857349	68857349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	107	745	1	ENST00000261769.5:c.1984G>A	p.Asp662Asn	p.D662N	ENST00000261769	NM_004360.3	662	Gac/Aac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822672	72822672	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1173	352	876	0	ENST00000268489.5:c.9503G>T	p.Gly3168Val	p.G3168V	ENST00000268489	NM_006885.3	3168	gGa/gTa																																																																															
CARM1	10498	MSKCC	GRCh37	19	11015623	11015638	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTAGATGAAGATGTGT	GTAGATGAAGATGTGT	-			P-0023132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	154	634	0	ENST00000327064.4:c.221-2_234del		p.X74_splice	ENST00000327064	NM_199141.1	74																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15299917	15299917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	116	794	3	ENST00000263388.2:c.1261C>T	p.Arg421Cys	p.R421C	ENST00000263388	NM_000435.2	421	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	72	634	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0023131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	12	476	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0023131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	19	322	0	ENST00000412916.2:c.165+1del		p.X55_splice	ENST00000412916		55																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	118	915	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	81	1183	0	ENST00000269305.4:c.395A>C	p.Lys132Thr	p.K132T	ENST00000269305	NM_001126112.2	132	aAg/aCg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399409	139399411	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0023101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	207	859	5	ENST00000277541.6:c.4732_4734delGTG	p.Val1578del	p.V1578del	ENST00000277541	NM_017617.3	1578	GTG/-																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692783	89692827	+	inframe_deletion	In_Frame_Del	DEL	TTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTT	TTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTT	-			P-0023101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	18	601	0	ENST00000371953.3:c.269_313del	p.Phe90_Phe104del	p.F90_F104del	ENST00000371953	NM_000314.4	89	ccTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTt/cct																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911484	32911484	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	86	688	0	ENST00000380152.3:c.2993del	p.Gly998ValfsTer45	p.G998Vfs*45	ENST00000380152		998	Ggt/gt																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361184	66361184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	81	541	1	ENST00000273854.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000273854	NM_004439.5	330	Gag/Aag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21994261	21994261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	116	657	0	ENST00000361570.3:c.193G>A	p.Val65Met	p.V65M	ENST00000361570	NM_058195.3	65	Gtg/Atg																																																																															
AR	367	MSKCC	GRCh37	X	66931471	66931471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	183	857	0	ENST00000374690.3:c.2113C>A	p.Leu705Ile	p.L705I	ENST00000374690	NM_000044.3	705	Ctc/Atc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0023022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	234	745	4	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578277	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0023022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	182	741	3	ENST00000269305.4:c.572_574del	p.Pro191del	p.P191del	ENST00000269305	NM_001126112.2	191	cCTCag/cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0023022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	72	870	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0023022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	113	487	2	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0023022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	81	280	1	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577144	7577146	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0023022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	86	728	5	ENST00000269305.4:c.792_794delACT	p.Leu265del	p.L265del	ENST00000269305	NM_001126112.2	264	ctACTg/ctg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117739	70117739	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	325	862	1	ENST00000245479.2:c.210del	p.Val71CysfsTer39	p.V71Cfs*39	ENST00000245479	NM_000346.3	69	ttC/tt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178919110	178919110	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	113	402	0	ENST00000263967.3:c.595T>C	p.Ser199Pro	p.S199P	ENST00000263967	NM_006218.2	199	Tct/Cct																																																																															
TERT	7015	MSKCC	GRCh37	5	1295271	1295271	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0023022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	42	605	0				ENST00000310581	NM_198253.2																																																																																	
MSH3	4437	MSKCC	GRCh37	5	80150077	80150077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	208	786	5	ENST00000265081.6:c.2942C>T	p.Thr981Met	p.T981M	ENST00000265081	NM_002439.4	981	aCg/aTg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38173545	38173545	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	141	524	0	ENST00000317025.8:c.1871C>A	p.Ser624Ter	p.S624*	ENST00000317025	NM_023034.1	624	tCa/tAa																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	262	805	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627436	14627436	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	58	848	0	ENST00000254322.2:c.634T>C	p.Trp212Arg	p.W212R	ENST00000254322	NM_006145.1	212	Tgg/Cgg																																																																															
ABL1	25	MSKCC	GRCh37	9	133738222	133738222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	128	647	1	ENST00000318560.5:c.622G>A	p.Gly208Arg	p.G208R	ENST00000318560	NM_005157.4	208	Ggg/Agg																																																																															
AXL	558	MSKCC	GRCh37	19	41744482	41744482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	35	962	2	ENST00000301178.4:c.1102C>T	p.Arg368Trp	p.R368W	ENST00000301178	NM_021913.4	368	Cgg/Tgg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139410441	139410441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	68	836	1	ENST00000277541.6:c.1661G>A	p.Cys554Tyr	p.C554Y	ENST00000277541	NM_017617.3	554	tGc/tAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118365081	118365081	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	255	622	1	ENST00000534358.1:c.5257del	p.Ala1753ProfsTer70	p.A1753Pfs*70	ENST00000534358	NM_005933.3	1753	Gcc/cc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919693	50919693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	412	1106	2	ENST00000440232.2:c.2861C>T	p.Thr954Met	p.T954M	ENST00000440232	NM_002691.3	954	aCg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	67	762	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0023104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	136	550	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579400	7579400	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	213	829	0	ENST00000269305.4:c.287del	p.Ser96LeufsTer27	p.S96Lfs*27	ENST00000269305	NM_001126112.2	96	tCt/tt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604707	48604707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	109	577	1	ENST00000342988.3:c.1529G>A	p.Gly510Glu	p.G510E	ENST00000342988	NM_005359.5	510	gGa/gAa																																																																															
AKT3	10000	MSKCC	GRCh37	1	243858957	243858958	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGA			P-0023104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	28	641	1	ENST00000263826.5:c.104_107dup	p.Gly37HisfsTer4	p.G37Hfs*4	ENST00000263826	NM_005465.4	36	ata/atTCATa																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	261	651	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600470	10600470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	589	769	0	ENST00000171111.5:c.1385G>T	p.Gly462Val	p.G462V	ENST00000171111	NM_203500.1	462	gGg/gTg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245336	41245336	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	239	912	0	ENST00000357654.3:c.2212G>T	p.Val738Phe	p.V738F	ENST00000357654	NM_007294.3	738	Gtt/Ttt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220449	1220450	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCTGCT			P-0023096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	585	982	0	ENST00000326873.7:c.543_548dup	p.Leu183_Leu184dup	p.L183_L184dup	ENST00000326873	NM_000455.4	183	aac/aaCCTGCTc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670544	134670544	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	420	930	1	ENST00000398015.3:c.455G>T	p.Gly152Val	p.G152V	ENST00000398015	NM_004441.4	152	gGg/gTg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0023017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	510	622	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0023017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	270	931	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	389	879	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577567	7577568	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0023006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	443	869	0	ENST00000269305.4:c.713_714delGT	p.Cys238Ter	p.C238*	ENST00000269305	NM_001126112.2	238	tGT/t																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78727981	78727981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	148	489	0	ENST00000306801.3:c.826C>T	p.Arg276Cys	p.R276C	ENST00000306801	NM_020761.2	276	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0023010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	28	420	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0023023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	745	1100	0	ENST00000397752.3:c.3028G>T	p.Asp1010Tyr	p.D1010Y	ENST00000397752	NM_000245.2	1010	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578483	7578483	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	148	1060	1	ENST00000269305.4:c.447del	p.Thr150HisfsTer20	p.T150Hfs*20	ENST00000269305	NM_001126112.2	149	tcC/tc																																																																															
SMO	6608	MSKCC	GRCh37	7	128850879	128850879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	52	920	0	ENST00000249373.3:c.1726C>T	p.Arg576Trp	p.R576W	ENST00000249373	NM_005631.4	576	Cgg/Tgg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120951	115120951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	81	749	0	ENST00000257566.3:c.55C>T	p.Pro19Ser	p.P19S	ENST00000257566	NM_016569.3	19	Ccg/Tcg																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39567832	39567832	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	31	486	0	ENST00000262039.4:c.588G>T	p.Leu196Phe	p.L196F	ENST00000262039	NM_002647.2	196	ttG/ttT																																																																															
ATR	545	MSKCC	GRCh37	3	142279235	142279235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	144	838	0	ENST00000350721.4:c.1411G>A	p.Glu471Lys	p.E471K	ENST00000350721	NM_001184.3	471	Gaa/Aaa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32183016	32183016	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs8192566		P-0023023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	37	861	4	ENST00000375023.3:c.2008G>A	p.Gly670Arg	p.G670R	ENST00000375023	NM_004557.3	670	Ggg/Agg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137293660	137293660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	51	1147	0	ENST00000481739.1:c.211C>T	p.Pro71Ser	p.P71S	ENST00000481739	NM_002957.4	71	Ccc/Tcc																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1325345	1325345	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	50	666	1	ENST00000381566.1:c.330T>A	p.Ser110Arg	p.S110R	ENST00000381566		110	agT/agA																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	57	561	1				ENST00000310581	NM_198253.2																																																																																	
TP53	7157	MSKCC	GRCh37	17	7579566	7579584	+	frameshift_variant	Frame_Shift_Del	DEL	CCATTGCTTGGGACGGCAA	CCATTGCTTGGGACGGCAA	-			P-0023007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	58	834	0	ENST00000269305.4:c.103_121del	p.Leu35MetfsTer3	p.L35Mfs*3	ENST00000269305	NM_001126112.2	35	TTGCCGTCCCAAGCAATGGat/at																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0022945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	186	730	7	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56491645	56491645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	120	699	1	ENST00000267101.3:c.2537G>T	p.Ser846Ile	p.S846I	ENST00000267101	NM_001982.3	846	aGt/aTt																																																																															
JUN	3725	MSKCC	GRCh37	1	59248408	59248409	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0022945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	138	421	5	ENST00000371222.2:c.333_334dup	p.Glu112AlafsTer37	p.E112Afs*37	ENST00000371222	NM_002228.3	112	gag/gCGag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346492	89346493	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTTCAC			P-0022945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	270	756	2	ENST00000301030.4:c.6452_6457dup	p.Gly2151_Glu2152dup	p.G2151_E2152dup	ENST00000301030	NM_001256183.1	2151	gcg/gGTGAAGcg																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41265933	41266400	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTA	AATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTA	-			P-0022945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	79	55	2	ENST00000349496.5:c.14-80_242-41del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	154	759	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0022973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	233	763	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	175	420	2	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5273548	5273548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	274	690	2	ENST00000357368.4:c.284C>T	p.Pro95Leu	p.P95L	ENST00000357368	NM_002850.3	95	cCg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	61	754	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	92	897	2	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
BBC3	27113	MSKCC	GRCh37	19	47729829	47729829	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	73	988	0	ENST00000449228.1:c.560G>T	p.Arg187Leu	p.R187L	ENST00000449228	NM_001127240.2	187	cGa/cTa																																																																															
TERT	7015	MSKCC	GRCh37	5	1294052	1294052	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	89	1253	1	ENST00000310581.5:c.949T>A	p.Trp317Arg	p.W317R	ENST00000310581	NM_198253.2	317	Tgg/Agg																																																																															
APC	324	MSKCC	GRCh37	5	112175689	112175693	+	stop_gained,protein_altering_variant	Nonsense_Mutation	DEL	ACCTA	ACCTA	CT			P-0022957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	70	406	1	ENST00000257430.4:c.4398_4402delinsCT	p.Pro1467_Lys1468delinsTer	p.P1467_K1468delins*	ENST00000257430	NM_000038.5	1466	ggACCTAag/ggCTag																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979620	7979620	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs559401066		P-0022926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	51	697	1	ENST00000319144.4:c.1405C>T	p.Arg469Trp	p.R469W	ENST00000319144	NM_001139.2	469	Cgg/Tgg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435065	56435065	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	52	724	0	ENST00000407977.2:c.2072C>G	p.Pro691Arg	p.P691R	ENST00000407977		691	cCt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0022917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	34	775	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46268525	46268525	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199688314		P-0022917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	39	417	0	ENST00000371998.3:c.2912C>T	p.Ala971Val	p.A971V	ENST00000371998		971	gCg/gTg																																																																															
APC	324	MSKCC	GRCh37	5	112111420	112111420	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	19	361	0	ENST00000257430.4:c.518del	p.Pro173LeufsTer2	p.P173Lfs*2	ENST00000257430	NM_000038.5	173	Cct/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	173	870	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15827390	15827390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	133	301	0	ENST00000307771.7:c.506G>A	p.Arg169Gln	p.R169Q	ENST00000307771	NM_005089.3	169	cGa/cAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	82	813	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	165	812	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0022946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	175	631	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30098287	30098287	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	93	741	0	ENST00000331968.5:c.1685T>A	p.Val562Glu	p.V562E	ENST00000331968	NM_002742.2	562	gTg/gAg																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259216	89259216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	49	517	0	ENST00000336596.2:c.360C>A	p.Phe120Leu	p.F120L	ENST00000336596	NM_005233.5	120	ttC/ttA																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44937752	44937752	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0022946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	91	855	0	ENST00000377967.4:c.2938+2T>G		p.X980_splice	ENST00000377967	NM_021140.2	980																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	386	714	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210451	2210451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	150	756	3	ENST00000398665.3:c.1058C>T	p.Ala353Val	p.A353V	ENST00000398665	NM_032482.2	353	gCg/gTg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500637	99500637	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200539075		P-0022916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	186	465	1	ENST00000268035.6:c.4070G>A	p.Arg1357Gln	p.R1357Q	ENST00000268035	NM_000875.3	1357	cGg/cAg																																																																															
BLM	641	MSKCC	GRCh37	15	91306247	91306247	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	79	626	0	ENST00000355112.3:c.1934A>G	p.Gln645Arg	p.Q645R	ENST00000355112	NM_000057.2	645	cAa/cGa																																																																															
STAT3	6774	MSKCC	GRCh37	17	40486041	40486041	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	276	646	0	ENST00000264657.5:c.824T>C	p.Leu275Pro	p.L275P	ENST00000264657	NM_139276.2	275	cTt/cCt																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804385	46804386	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	102	481	0	ENST00000290295.7:c.621dup	p.Pro208SerfsTer2	p.P208Sfs*2	ENST00000290295	NM_006361.5	207	-/T																																																																															
APC	324	MSKCC	GRCh37	5	112155043	112155043	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0022916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	205	474	0	ENST00000257430.4:c.1312+2T>G		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114711033	114711034	+	splice_donor_variant	Splice_Site	DNP	GT	GT	CA			P-0022916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	85	311	0	ENST00000543371.1:c.256+1_256+2delinsCA		p.X86_splice	ENST00000543371	NM_001198531.1	86																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0022977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	14	370	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																															
ATRX	546	MSKCC	GRCh37	X	76855029	76855029	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	16	559	4	ENST00000373344.5:c.5807A>G	p.Lys1936Arg	p.K1936R	ENST00000373344	NM_000489.3	1936	aAg/aGg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37045935	37045935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	32	503	0	ENST00000231790.2:c.350C>T	p.Thr117Met	p.T117M	ENST00000231790	NM_000249.3	117	aCg/aTg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435114	110435114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	187	1085	1	ENST00000375856.3:c.3287C>T	p.Ala1096Val	p.A1096V	ENST00000375856	NM_003749.2	1096	gCc/gTc																																																																															
ETV6	2120	MSKCC	GRCh37	12	11992187	11992187	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	151	733	0	ENST00000396373.4:c.277G>C	p.Ala93Pro	p.A93P	ENST00000396373	NM_001987.4	93	Gct/Cct																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873684	35873684	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	218	827	0	ENST00000216797.5:c.167C>G	p.Pro56Arg	p.P56R	ENST00000216797	NM_020529.2	56	cCg/cGg																																																																															
CDH1	999	MSKCC	GRCh37	16	68847298	68847369	+	inframe_deletion	In_Frame_Del	DEL	CAGCGTGGGAGGCTGTATACACCATATTGAATGATGATGGTGGACAATTTGTCGTCACCACAAATCCAGTGA	CAGCGTGGGAGGCTGTATACACCATATTGAATGATGATGGTGGACAATTTGTCGTCACCACAAATCCAGTGA	-			P-0022920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	59	891	0	ENST00000261769.5:c.1220_1291del	p.Pro407_Asn431delinsHis	p.P407_N431delinsH	ENST00000261769	NM_004360.3	407	cCAGCGTGGGAGGCTGTATACACCATATTGAATGATGATGGTGGACAATTTGTCGTCACCACAAATCCAGTGAac/cac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0022949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	138	917	1	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																															
CDK4	1019	MSKCC	GRCh37	12	58145430	58145430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	74	567	0	ENST00000257904.6:c.71G>A	p.Arg24His	p.R24H	ENST00000257904	NM_000075.3	24	cGt/cAt																																																																															
NF2	4771	MSKCC	GRCh37	22	30054182	30054182	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	53	459	0	ENST00000338641.4:c.604G>T	p.Glu202Ter	p.E202*	ENST00000338641	NM_000268.3	202	Gaa/Taa																																																																															
POLE	5426	MSKCC	GRCh37	12	133253238	133253238	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0022949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	54	634	0	ENST00000320574.5:c.803A>C	p.Asp268Ala	p.D268A	ENST00000320574	NM_006231.2	268	gAc/gCc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7984250	7984250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	27	692	0	ENST00000319144.4:c.479C>T	p.Pro160Leu	p.P160L	ENST00000319144	NM_001139.2	160	cCc/cTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29563013	29563014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	43	566	1	ENST00000358273.4:c.3948_3949insA	p.Val1317SerfsTer2	p.V1317Sfs*2	ENST00000358273	NM_001042492.2	1316	-/A																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602939	10602939	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0022949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	78	831	1	ENST00000171111.5:c.640-1G>T		p.X214_splice	ENST00000171111	NM_203500.1	214																																																																																
RBM10	8241	MSKCC	GRCh37	X	47039429	47039429	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	40	319	0	ENST00000329236.7:c.821C>G	p.Ser274Cys	p.S274C	ENST00000329236	NM_001204466.1	274	tCc/tGc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123210275	123210275	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	24	333	0	ENST00000218089.9:c.2627T>G	p.Val876Gly	p.V876G	ENST00000218089	NM_001042749.1	876	gTg/gGg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123210277	123210277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	23	329	1	ENST00000218089.9:c.2629G>T	p.Val877Leu	p.V877L	ENST00000218089	NM_001042749.1	877	Gtg/Ttg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577375	64577375	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	333	809	1	ENST00000337652.1:c.207del	p.Asp70ThrfsTer49	p.D70Tfs*49	ENST00000337652	NM_130803.2	69	ccC/cc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366353	15366353	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200484332		P-0022955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	42	665	3	ENST00000263377.2:c.1802C>T	p.Ser601Leu	p.S601L	ENST00000263377	NM_058243.2	601	tCg/tTg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38958622	38958622	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0022955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	19	272	0	ENST00000357387.3:c.2344-1G>A		p.X782_splice	ENST00000357387	NM_152756.3	782																																																																																
ATRX	546	MSKCC	GRCh37	X	76937024	76937025	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0022955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	224	512	0	ENST00000373344.5:c.3723_3724del	p.Phe1241LeufsTer7	p.F1241Lfs*7	ENST00000373344	NM_000489.3	1241	ttTTgc/ttgc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0022919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	2603	793	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	249	893	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289639	15289639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	117	969	0	ENST00000263388.2:c.3832G>A	p.Ala1278Thr	p.A1278T	ENST00000263388	NM_000435.2	1278	Gcc/Acc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518695	176518695	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	439	769	0	ENST00000292408.4:c.613C>T	p.Gln205Ter	p.Q205*	ENST00000292408	NM_213647.1	205	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0022923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	42	943	1	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341817	8341817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	19	957	1	ENST00000356435.5:c.4823C>T	p.Ala1608Val	p.A1608V	ENST00000356435		1608	gCa/gTa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600332	10600332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	53	875	1	ENST00000171111.5:c.1523G>A	p.Ser508Asn	p.S508N	ENST00000171111	NM_203500.1	508	aGc/aAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	39	685	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577026	7577026	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	133	783	2	ENST00000269305.4:c.912del	p.Lys305SerfsTer40	p.K305Sfs*40	ENST00000269305	NM_001126112.2	304	acT/ac																																																																															
MALT1	10892	MSKCC	GRCh37	18	56376638	56376638	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	74	510	0	ENST00000348428.3:c.678G>C	p.Lys226Asn	p.K226N	ENST00000348428	NM_006785.3	226	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0022930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	492	774	1	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610382	10610382	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	453	884	0	ENST00000171111.5:c.328A>G	p.Met110Val	p.M110V	ENST00000171111	NM_203500.1	110	Atg/Gtg																																																																															
STK11	6794	MSKCC	GRCh37	19	1219321	1219321	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0022930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	391	708	0	ENST00000326873.7:c.375-2A>T		p.X125_splice	ENST00000326873	NM_000455.4	125																																																																																
AKT3	10000	MSKCC	GRCh37	1	243777010	243777010	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	489	710	0	ENST00000263826.5:c.659G>C	p.Arg220Pro	p.R220P	ENST00000263826	NM_005465.4	220	cGt/cCt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628853	187628853	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	200	730	0	ENST00000441802.2:c.2129A>G	p.Asn710Ser	p.N710S	ENST00000441802	NM_005245.3	710	aAt/aGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	242	807	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0022934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	37	706	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943652	17943652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	133	1212	2	ENST00000458235.1:c.2437G>T	p.Asp813Tyr	p.D813Y	ENST00000458235	NM_000215.3	813	Gac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579582	7579583	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	88	939	1	ENST00000269305.4:c.104dup	p.Leu35PhefsTer8	p.L35Ffs*8	ENST00000269305	NM_001126112.2	35	ttg/ttTg																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797406	45797406	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	52	963	0	ENST00000372115.3:c.1071C>G	p.Ser357Arg	p.S357R	ENST00000372115	NM_001048171.1	357	agC/agG																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851186	63851186	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	101	805	0	ENST00000279873.7:c.1964A>G	p.Asp655Gly	p.D655G	ENST00000279873	NM_032199.2	655	gAc/gGc																																																																															
WT1	7490	MSKCC	GRCh37	11	32456797	32456797	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	92	972	0	ENST00000332351.3:c.95G>T	p.Gly32Val	p.G32V	ENST00000332351	NM_024426.4	32	gGa/gTa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022675	12022675	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	81	776	1	ENST00000396373.4:c.781G>T	p.Glu261Ter	p.E261*	ENST00000396373	NM_001987.4	261	Gag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72984395	72984395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	31	776	0	ENST00000268489.5:c.3189G>T	p.Arg1063Ser	p.R1063S	ENST00000268489	NM_006885.3	1063	agG/agT																																																																															
FANCA	2175	MSKCC	GRCh37	16	89871737	89871737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	47	946	0	ENST00000389301.3:c.660G>C	p.Gln220His	p.Q220H	ENST00000389301	NM_000135.2	220	caG/caC																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40369273	40369273	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	141	757	0	ENST00000293328.3:c.1285C>A	p.Arg429Ser	p.R429S	ENST00000293328	NM_012448.3	429	Cgt/Agt																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155362	185155362	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	47	669	0	ENST00000265026.3:c.603T>G	p.Asn201Lys	p.N201K	ENST00000265026	NM_004721.4	201	aaT/aaG																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133552	55133552	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	94	771	0	ENST00000257290.5:c.856G>T	p.Gly286Ter	p.G286*	ENST00000257290	NM_006206.4	286	Gga/Tga																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081585	143081585	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	40	827	1	ENST00000262992.4:c.1489C>A	p.Pro497Thr	p.P497T	ENST00000262992	NM_001101669.1	497	Ccc/Acc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891335	101891336	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	119	805	0	ENST00000374994.4:c.298dup	p.Cys100LeufsTer9	p.C100Lfs*9	ENST00000374994	NM_004612.2	99	tat/taTt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137328329	137328329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	127	1021	0	ENST00000481739.1:c.1258C>T	p.Leu420Phe	p.L420F	ENST00000481739	NM_002957.4	420	Ctc/Ttc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038717	47038717	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0022934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	60	1029	0	ENST00000329236.7:c.494-1G>T		p.X165_splice	ENST00000329236	NM_001204466.1	165																																																																																
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0006767-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			56	361	881	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
RB1	5925	MSKCC	GRCh37	13	48941715	48941716	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0006767-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			42	102	509	0	ENST00000267163.4:c.1027_1028del	p.Leu343SerfsTer3	p.L343Sfs*3	ENST00000267163	NM_000321.2	342	aCT/a																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138376590	138376590	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006767-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			318	316	731	0	ENST00000289153.2:c.2884T>A	p.Tyr962Asn	p.Y962N	ENST00000289153	NM_006219.2	962	Tat/Aat																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223310	36223310	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006767-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			510	437	1194	1	ENST00000222270.7:c.5860A>G	p.Thr1954Ala	p.T1954A	ENST00000222270	NM_014727.1	1954	Acc/Gcc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	193	681	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	14	822	0	ENST00000269305.4:c.747G>C	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agC																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575112	64575112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	193	683	1	ENST00000337652.1:c.710G>A	p.Arg237His	p.R237H	ENST00000337652	NM_130803.2	237	cGc/cAc																																																																															
CALR	811	MSKCC	GRCh37	19	13050045	13050046	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	104	461	0	ENST00000316448.5:c.192dup	p.Gly65ArgfsTer36	p.G65Rfs*36	ENST00000316448	NM_004343.3	63	-/A																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62309683	62309683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	188	634	0	ENST00000508582.2:c.1093G>T	p.Val365Phe	p.V365F	ENST00000508582		365	Gtc/Ttc																																																																															
ABL1	25	MSKCC	GRCh37	9	133747519	133747519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	75	493	0	ENST00000318560.5:c.826G>A	p.Asp276Asn	p.D276N	ENST00000318560	NM_005157.4	276	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0022990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	62	742	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	76	718	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120812	94120812	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200883289		P-0022990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	33	666	0	ENST00000369303.4:c.239A>G	p.Asn80Ser	p.N80S	ENST00000369303	NM_004440.3	80	aAc/aGc																																																																															
STAG2	10735	MSKCC	GRCh37	X	123210302	123210302	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	60	266	0	ENST00000218089.9:c.2654T>C	p.Ile885Thr	p.I885T	ENST00000218089	NM_001042749.1	885	aTc/aCc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521543	8521543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	57	563	0	ENST00000356435.5:c.695G>A	p.Arg232His	p.R232H	ENST00000356435		232	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0022882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	255	954	1	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																																
RARA	5914	MSKCC	GRCh37	17	38510648	38510648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	2751	1140	0	ENST00000254066.5:c.902G>A	p.Gly301Asp	p.G301D	ENST00000254066	NM_000964.3	301	gGc/gAc																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29197761	29197762	+	splice_acceptor_variant	Splice_Site	INS	-	-	TGTA			P-0022882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	158	1215	0	ENST00000240100.2:c.434-5_434-2dup		p.X145_splice	ENST00000240100	NM_001394.6	145																																																																																
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0022673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	255	609	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
CBFB	865	MSKCC	GRCh37	16	67063628	67063628	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0022673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	307	692	2	ENST00000412916.2:c.79-2A>G		p.X27_splice	ENST00000412916		27																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151845627	151845627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	574	737	0	ENST00000262189.6:c.13385G>T	p.Cys4462Phe	p.C4462F	ENST00000262189	NM_170606.2	4462	tGt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0022892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	104	1058	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	107	1171	0	ENST00000269305.4:c.472C>A	p.Arg158Ser	p.R158S	ENST00000269305	NM_001126112.2	158	Cgc/Agc																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23538909	23538909	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	98	734	0	ENST00000380871.4:c.530A>G	p.Tyr177Cys	p.Y177C	ENST00000380871	NM_006167.3	177	tAt/tGt																																																																															
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	37	775	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0022654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	42	706	1	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515248	103515248	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	25	470	0	ENST00000355739.4:c.1749G>T	p.Leu583Phe	p.L583F	ENST00000355739	NM_000123.3	583	ttG/ttT																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660731	227660731	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0022654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	45	791	0	ENST00000305123.5:c.2724C>G	p.Tyr908Ter	p.Y908*	ENST00000305123	NM_005544.2	908	taC/taG																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0022653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	144	517	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
NTHL1	4913	MSKCC	GRCh37	16	2096313	2096313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	203	872	0	ENST00000219066.1:c.194G>A	p.Arg65His	p.R65H	ENST00000219066	NM_002528.5	65	cGt/cAt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71037210	71037210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	97	463	0	ENST00000318789.4:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000318789	NM_032682.5	361	Cgc/Tgc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187527273	187527273	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	153	626	0	ENST00000441802.2:c.10301A>G	p.Asn3434Ser	p.N3434S	ENST00000441802	NM_005245.3	3434	aAt/aGt																																																																															
IRF4	3662	MSKCC	GRCh37	6	393283	393283	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	356	804	0	ENST00000380956.4:c.131A>G	p.Asn44Ser	p.N44S	ENST00000380956	NM_001195286.1	44	aAc/aGc																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0022707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	312	648	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913836	32913837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	191	592	0	ENST00000380152.3:c.5351dup	p.Asn1784LysfsTer3	p.N1784Kfs*3	ENST00000380152		1782	caa/cAaa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858549	9858549	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs139795367		P-0022707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	267	581	0	ENST00000330684.3:c.2852G>T	p.Gly951Val	p.G951V	ENST00000330684	NM_001134407.1	951	gGg/gTg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12421277	12421277	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	318	762	0	ENST00000287820.6:c.157A>G	p.Met53Val	p.M53V	ENST00000287820	NM_015869.4	53	Atg/Gtg																																																																															
PPARG	5468	MSKCC	GRCh37	3	12421286	12421286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	333	782	1	ENST00000287820.6:c.166C>T	p.His56Tyr	p.H56Y	ENST00000287820	NM_015869.4	56	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0022651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	373	740	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166763	32166763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	284	775	0	ENST00000375023.3:c.4475G>A	p.Arg1492Gln	p.R1492Q	ENST00000375023	NM_004557.3	1492	cGg/cAg																																																																															
AR	367	MSKCC	GRCh37	X	66765533	66765533	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	101	794	0	ENST00000374690.3:c.545A>G	p.Lys182Arg	p.K182R	ENST00000374690	NM_000044.3	182	aAa/aGa																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575035	64575035	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	206	582	0	ENST00000337652.1:c.787C>T	p.Gln263Ter	p.Q263*	ENST00000337652	NM_130803.2	263	Cag/Tag																																																																															
ATRX	546	MSKCC	GRCh37	X	76939291	76939291	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	150	979	0	ENST00000373344.5:c.1457del	p.Asn486IlefsTer28	p.N486Ifs*28	ENST00000373344	NM_000489.3	486	aAt/at																																																																															
POLE	5426	MSKCC	GRCh37	12	133209274	133209274	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181570274		P-0022821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	144	832	2	ENST00000320574.5:c.6112G>A	p.Glu2038Lys	p.E2038K	ENST00000320574	NM_006231.2	2038	Gag/Aag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57857524	57857524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	136	793	4	ENST00000228682.2:c.50G>A	p.Cys17Tyr	p.C17Y	ENST00000228682	NM_005269.2	17	tGc/tAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579561	7579565	+	frameshift_variant	Frame_Shift_Del	DEL	ATCAT	ATCAT	-			P-0022821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	270	800	0	ENST00000269305.4:c.122_126del	p.Asp41ValfsTer9	p.D41Vfs*9	ENST00000269305	NM_001126112.2	41	gATGAT/g																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243457	41243457	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	185	879	1	ENST00000357654.3:c.4091A>T	p.Asn1364Ile	p.N1364I	ENST00000357654	NM_007294.3	1364	aAc/aTc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023964	31023964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	279	806	0	ENST00000375687.4:c.3449G>C	p.Gly1150Ala	p.G1150A	ENST00000375687	NM_015338.5	1150	gGa/gCa																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119624589	119624622	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCAACCTTCTCACCTTGATTATTTCTACCAACTG	TCAACCTTCTCACCTTGATTATTTCTACCAACTG	-			P-0022821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	55	610	0	ENST00000316626.5:c.793_813+13del		p.X265_splice	ENST00000316626		265																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151864351	151864680	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTCTTAGATTTTCTGTGAGCACCAATTTGTTCTTCAAGATACTTCTGCTGCATTTGAAGCAGCTGTTGGGTCTCCTGGAGCCACTCTTCATACTGCTTACGCTGTGAATCATCTGAGGAAAAATTAAAATTCAGTTGTGTTAATTTTCTAAAGAGTCCAACATTATAAGTTACACAAATCTATTTTGTAAGGAAGTAGTTTCACCATGACCACATAATAGGAAATTTGAAAACACAATACTAAATATTAGACGATTATGTAATGATAAAATATCAGATTTTAGAAAAATATTTAATTGAGAAAGCCAGAGAATGCACATTCTTGAGATA	CTTCTTAGATTTTCTGTGAGCACCAATTTGTTCTTCAAGATACTTCTGCTGCATTTGAAGCAGCTGTTGGGTCTCCTGGAGCCACTCTTCATACTGCTTACGCTGTGAATCATCTGAGGAAAAATTAAAATTCAGTTGTGTTAATTTTCTAAAGAGTCCAACATTATAAGTTACACAAATCTATTTTGTAAGGAAGTAGTTTCACCATGACCACATAATAGGAAATTTGAAAACACAATACTAAATATTAGACGATTATGTAATGATAAAATATCAGATTTTAGAAAAATATTTAATTGAGAAAGCCAGAGAATGCACATTCTTGAGATA	-			P-0022821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	64	683	0	ENST00000262189.6:c.9518-217_9630del		p.X3173_splice	ENST00000262189	NM_170606.2	3173																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0022822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	228	767	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94209542	94209542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	112	607	1	ENST00000323929.3:c.572G>A	p.Arg191Gln	p.R191Q	ENST00000323929	NM_005591.3	191	cGa/cAa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30102148	30102148	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	90	652	0	ENST00000331968.5:c.1319A>C	p.Lys440Thr	p.K440T	ENST00000331968	NM_002742.2	440	aAa/aCa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165700	47166476	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATTTTGCCCAATTCCACCCTTGACTTTGGTGGGGAAGATTCTTCTGCAGTAGATAAGGTATCACCAATTTCCATTTTCATTTTAGGAGTCGAGTCTACCTGAAGAGGTACAGCTGGAGGGTTTGGAGTATCACTTTGCTTTTCATTGCCAAGTGCAGTGAGAAACCTATTCTGCAAAGTTTTCTTTGTAAGGCTGAAGCTGAATGACACCTTCTGTCGTCCCTGTTCTTCCAAATTAACTTTTGTTTTGGTGCCTTTGGGCAAAAATCGACTAGAAGCAACACCTTTGAACATTGGTCCTTTGATGAAACCTGTTTTCTGCACATTTTCAATCTTTGCCTACAAATGAACAAAATAAGCAATTACTACTACAATAAATAGTTACTTTCAAATGGACTGCACAGTTTAAAATGTTTACTGGAGAAATGAAAAGCCCTTTTTAATAACAAATAGTATGAATTTCACTAAGCTATATATATCTTTATTATGAAAATTTTCAAACACAGTCAAAAGTATAGAAAATGGTATAATAAATCCCTAAGTATCCACTCCAAGCTTCAACAATTACCTATTTTCCCCATTCTTACTTTCTCGTACATAAATAACTTTTTTCAGTTTTATAACTATTTTCCAGGTAGCATTTTTTAAAAAGAATTTTTTAAAAACCTGACATATGTTTGAAAGACATTTGTATAAAGGGCAATATCTAACATCTCAGTACTCAATATGGTTTGTTCTTGTGTTCTATCAGAGATGAAAAATCAGAGGTCATCAAGA	AATTTTGCCCAATTCCACCCTTGACTTTGGTGGGGAAGATTCTTCTGCAGTAGATAAGGTATCACCAATTTCCATTTTCATTTTAGGAGTCGAGTCTACCTGAAGAGGTACAGCTGGAGGGTTTGGAGTATCACTTTGCTTTTCATTGCCAAGTGCAGTGAGAAACCTATTCTGCAAAGTTTTCTTTGTAAGGCTGAAGCTGAATGACACCTTCTGTCGTCCCTGTTCTTCCAAATTAACTTTTGTTTTGGTGCCTTTGGGCAAAAATCGACTAGAAGCAACACCTTTGAACATTGGTCCTTTGATGAAACCTGTTTTCTGCACATTTTCAATCTTTGCCTACAAATGAACAAAATAAGCAATTACTACTACAATAAATAGTTACTTTCAAATGGACTGCACAGTTTAAAATGTTTACTGGAGAAATGAAAAGCCCTTTTTAATAACAAATAGTATGAATTTCACTAAGCTATATATATCTTTATTATGAAAATTTTCAAACACAGTCAAAAGTATAGAAAATGGTATAATAAATCCCTAAGTATCCACTCCAAGCTTCAACAATTACCTATTTTCCCCATTCTTACTTTCTCGTACATAAATAACTTTTTTCAGTTTTATAACTATTTTCCAGGTAGCATTTTTTAAAAAGAATTTTTTAAAAACCTGACATATGTTTGAAAGACATTTGTATAAAGGGCAATATCTAACATCTCAGTACTCAATATGGTTTGTTCTTGTGTTCTATCAGAGATGAAAAATCAGAGGTCATCAAGA	-			P-0022822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	43	585	0	ENST00000409792.3:c.88-438_426del		p.X30_splice	ENST00000409792	NM_014159.6	30																																																																																
IFNGR1	3459	MSKCC	GRCh37	6	137540464	137540464	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0022822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	67	448	0	ENST00000367739.4:c.1A>G	p.Met1?	p.M1?	ENST00000367739	NM_000416.2	1	Atg/Gtg																																																																															
AR	367	MSKCC	GRCh37	X	66931282	66931282	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs111468555		P-0022822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	41	293	0	ENST00000374690.3:c.1924G>A	p.Glu642Lys	p.E642K	ENST00000374690	NM_000044.3	642	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	137	847	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0022820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	170	755	2	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																															
RB1	5925	MSKCC	GRCh37	13	48941694	48941694	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0022820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	205	588	0	ENST00000267163.4:c.1004T>A	p.Leu335Ter	p.L335*	ENST00000267163	NM_000321.2	335	tTa/tAa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211811	2211817	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCCTG	CAGCCTG	-			P-0022820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	169	923	0	ENST00000398665.3:c.1530_1536del	p.Ser510ArgfsTer45	p.S510Rfs*45	ENST00000398665	NM_032482.2	509	gcCAGCCTG/gc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921510	39921510	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0022820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	184	439	0	ENST00000378444.4:c.4310C>G	p.Ser1437Ter	p.S1437*	ENST00000378444	NM_001123385.1	1437	tCa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	22	812	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	424	892	4	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198267359	198267359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	160	765	1	ENST00000335508.6:c.1998G>T	p.Lys666Asn	p.K666N	ENST00000335508	NM_012433.2	666	aaG/aaT																																																																															
WT1	7490	MSKCC	GRCh37	11	32417920	32417920	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	123	705	0	ENST00000332351.3:c.1132C>G	p.Leu378Val	p.L378V	ENST00000332351	NM_024426.4	378	Ctt/Gtt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0022906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	161	1065	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0022906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	67	526	3	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578464	7578476	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGCCGGGCGG	GGGTGCCGGGCGG	-	rs876659215		P-0022906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	357	1256	0	ENST00000269305.4:c.454_466del	p.Pro152AlafsTer14	p.P152Afs*14	ENST00000269305	NM_001126112.2	152	CCGCCCGGCACCCgc/gc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10244964	10244964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	88	882	1	ENST00000340748.4:c.4745C>T	p.Pro1582Leu	p.P1582L	ENST00000340748		1582	cCg/cTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120106	70120106	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	30	154	0	ENST00000245479.2:c.1109del	p.Pro370ArgfsTer13	p.P370Rfs*13	ENST00000245479	NM_000346.3	370	Ccg/cg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2966388	2966388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145836432		P-0022906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	171	955	0	ENST00000396946.4:c.1792G>A	p.Ala598Thr	p.A598T	ENST00000396946	NM_032415.4	598	Gcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	74	473	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CBFB	865	MSKCC	GRCh37	16	67070567	67070567	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	70	432	0	ENST00000412916.2:c.191T>G	p.Leu64Arg	p.L64R	ENST00000412916		64	cTg/cGg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860235	151860236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0022829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	197	710	0	ENST00000262189.6:c.10426dup	p.Gln3476ProfsTer19	p.Q3476Pfs*19	ENST00000262189	NM_170606.2	3476	caa/cCaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	38	1281	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830751	72830751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	79	899	1	ENST00000268489.5:c.5830G>A	p.Ala1944Thr	p.A1944T	ENST00000268489	NM_006885.3	1944	Gcc/Acc																																																																															
KDM5A	5927	MSKCC	GRCh37	12	427480	427480	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	86	999	0	ENST00000399788.2:c.2689G>C	p.Glu897Gln	p.E897Q	ENST00000399788	NM_001042603.1	897	Gag/Cag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061131	38061202	+	inframe_deletion	In_Frame_Del	DEL	GCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTG	GCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTG	-			P-0022904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	115	337	0	ENST00000250448.2:c.787_858del	p.Gln263_Gly286del	p.Q263_G286del	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGC/-																																																																															
APC	324	MSKCC	GRCh37	5	112157630	112157631	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	46	905	0	ENST00000257430.4:c.1351dup	p.Cys451LeufsTer9	p.C451Lfs*9	ENST00000257430	NM_000038.5	450	-/T																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0022838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	123	702	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
ATM	472	MSKCC	GRCh37	11	108218052	108218052	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	123	534	0	ENST00000278616.4:c.8631G>C	p.Leu2877Phe	p.L2877F	ENST00000278616	NM_000051.3	2877	ttG/ttC																																																																															
SETD8	387893	MSKCC	GRCh37	12	123874011	123874013	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs780061449		P-0022838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	13	78	1	ENST00000330479.4:c.62_64del	p.Ala21del	p.A21del	ENST00000330479	NM_020382.3	14	gaGGCg/gag																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027380	48027380	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	57	401	0	ENST00000234420.5:c.2258C>G	p.Ser753Cys	p.S753C	ENST00000234420	NM_000179.2	753	tCt/tGt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225371596	225371596	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	43	599	0	ENST00000264414.4:c.1008G>C	p.Lys336Asn	p.K336N	ENST00000264414	NM_003590.4	336	aaG/aaC																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799499	72799499	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1143	96	805	0	ENST00000325599.8:c.1670del	p.Gly557AlafsTer5	p.G557Afs*5	ENST00000325599	NM_018130.2	557	gGc/gc																																																																															
SDHA	6389	MSKCC	GRCh37	5	256518	256518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	86	377	0	ENST00000264932.6:c.1978G>T	p.Ala660Ser	p.A660S	ENST00000264932	NM_004168.2	660	Gcc/Tcc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779503	3779504	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0022866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	168	688	0	ENST00000262367.5:c.5544_5545del	p.His1848GlnfsTer117	p.H1848Qfs*117	ENST00000262367	NM_004380.2	1848	caCAag/caag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47098380	47098393	+	frameshift_variant	Frame_Shift_Del	DEL	TTGATAATATATGG	TTGATAATATATGG	-			P-0022866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	260	478	0	ENST00000409792.3:c.6881_6894del	p.Thr2294ArgfsTer70	p.T2294Rfs*70	ENST00000409792	NM_014159.6	2294	aCCATATATTATCAA/a																																																																															
KIT	3815	MSKCC	GRCh37	4	55604655	55604655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	183	422	2	ENST00000288135.5:c.2863G>A	p.Val955Met	p.V955M	ENST00000288135	NM_000222.2	955	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579406	7579406	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0022870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	633	809	0	ENST00000269305.4:c.281C>G	p.Ser94Ter	p.S94*	ENST00000269305	NM_001126112.2	94	tCa/tGa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720676	89720677	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0022870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	162	263	0	ENST00000371953.3:c.828_829del	p.Thr277IlefsTer20	p.T277Ifs*20	ENST00000371953	NM_000314.4	276	aAT/a																																																																															
CASP8	841	MSKCC	GRCh37	2	202141621	202141621	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	374	490	1	ENST00000358485.4:c.909T>A	p.Phe303Leu	p.F303L	ENST00000358485	NM_001080125.1	303	ttT/ttA																																																																															
CDH1	999	MSKCC	GRCh37	16	68856113	68856113	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	75	751	0	ENST00000261769.5:c.1921C>T	p.Gln641Ter	p.Q641*	ENST00000261769	NM_004360.3	641	Cag/Tag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	461372	461372	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0022872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	42	482	0	ENST00000399788.2:c.1148A>C	p.His383Pro	p.H383P	ENST00000399788	NM_001042603.1	383	cAt/cCt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28624361	28624361	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0022872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	39	543	0	ENST00000241453.7:c.615-2A>G		p.X205_splice	ENST00000241453	NM_004119.2	205																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56180543	56180543	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	47	489	0	ENST00000399503.3:c.3872T>C	p.Leu1291Pro	p.L1291P	ENST00000399503	NM_005921.1	1291	cTa/cCa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	35	450	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0022750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	37	590	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998971	11998972	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	13	401	0	ENST00000353533.5:c.476dupC	p.Tyr160IlefsTer14	p.Y160Ifs*14	ENST00000353533	NM_003010.3	158	tgc/tgCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922364	178922364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	31	424	1	ENST00000263967.3:c.1133G>A	p.Cys378Tyr	p.C378Y	ENST00000263967	NM_006218.2	378	tGt/tAt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637813	176637813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	65	622	1	ENST00000439151.2:c.2413G>A	p.Val805Ile	p.V805I	ENST00000439151	NM_022455.4	805	Gtt/Att																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0022693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	123	354	0	ENST00000412916.2:c.165+1G>C		p.X55_splice	ENST00000412916		55																																																																																
ANKRD11	29123	MSKCC	GRCh37	16	89350973	89350974	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0022693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	269	1174	1	ENST00000301030.4:c.1976dup	p.Tyr659Ter	p.Y659*	ENST00000301030	NM_001256183.1	659	tac/taAc																																																																															
AKT2	208	MSKCC	GRCh37	19	40761127	40761128	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATGACAAAGGTGTTGGGTCGCGGCCTCTCGGTCTTC			P-0022693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	134	919	0	ENST00000392038.2:c.189_224dup	p.Met63_Val74dup	p.M63_V74dup	ENST00000392038	NM_001626.4	63	ata/atGAAGACCGAGAGGCCGCGACCCAACACCTTTGTCATa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	42	616	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	21	450	0	ENST00000244661.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000244661	NM_003537.3	74	Gaa/Caa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9523321	9523321	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	43	511	0	ENST00000353224.5:c.1916G>T	p.Gly639Val	p.G639V	ENST00000353224	NM_177990.2	639	gGc/gTc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420299	88420299	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	70	465	0	ENST00000360948.2:c.2387C>A	p.Pro796His	p.P796H	ENST00000360948	NM_001012338.2	796	cCc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578453	7578453	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	103	689	0	ENST00000269305.4:c.477del	p.Met160TrpfsTer10	p.M160Wfs*10	ENST00000269305	NM_001126112.2	159	gcC/gc																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400957	72400957	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	58	388	0	ENST00000357731.5:c.214C>A	p.Leu72Met	p.L72M	ENST00000357731	NM_173808.2	72	Ctg/Atg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115276469	115276469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	78	541	0	ENST00000438362.2:c.859G>A	p.Val287Ile	p.V287I	ENST00000438362	NM_001242891.1	287	Gtt/Att																																																																															
TET1	80312	MSKCC	GRCh37	10	70451032	70451032	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	75	494	2	ENST00000373644.4:c.5872G>T	p.Glu1958Ter	p.E1958*	ENST00000373644	NM_030625.2	1958	Gaa/Taa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230597	46230598	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0022844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	90	454	0	ENST00000334344.6:c.848dup	p.Gln284ThrfsTer16	p.Q284Tfs*16	ENST00000334344	NM_152641.2	282	-/G																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420191	88420191	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	67	510	0	ENST00000360948.2:c.2495C>A	p.Pro832Gln	p.P832Q	ENST00000360948	NM_001012338.2	832	cCa/cAa																																																																															
BLM	641	MSKCC	GRCh37	15	91312699	91312699	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	59	371	1	ENST00000355112.3:c.2438G>T	p.Arg813Ile	p.R813I	ENST00000355112	NM_000057.2	813	aGa/aTa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89858892	89858892	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	80	622	0	ENST00000389301.3:c.1070C>A	p.Ser357Ter	p.S357*	ENST00000389301	NM_000135.2	357	tCa/tAa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602859	10602859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	156	885	2	ENST00000171111.5:c.719G>T	p.Arg240Leu	p.R240L	ENST00000171111	NM_203500.1	240	cGc/cTc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943474	17943474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	91	660	0	ENST00000458235.1:c.2534G>A	p.Gly845Asp	p.G845D	ENST00000458235	NM_000215.3	845	gGc/gAc																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25964958	25964958	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	78	394	0	ENST00000435504.4:c.4248C>G	p.Phe1416Leu	p.F1416L	ENST00000435504		1416	ttC/ttG																																																																															
PAK7	57144	MSKCC	GRCh37	20	9525048	9525048	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	58	478	0	ENST00000353224.5:c.1837G>T	p.Glu613Ter	p.E613*	ENST00000353224	NM_177990.2	613	Gag/Tag																																																																															
NF2	4771	MSKCC	GRCh37	22	30069436	30069436	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	66	526	1	ENST00000338641.4:c.1301A>T	p.Glu434Val	p.E434V	ENST00000338641	NM_000268.3	434	gAg/gTg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286215	66286215	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	102	478	0	ENST00000273854.3:c.1471G>T	p.Glu491Ter	p.E491*	ENST00000273854	NM_004439.5	491	Gaa/Taa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356428	66356428	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0022844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	41	317	0	ENST00000273854.3:c.1069C>T	p.Pro357Ser	p.P357S	ENST00000273854	NM_004439.5	357	Ccc/Tcc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056813	180056813	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	176	739	0	ENST00000261937.6:c.699G>C	p.Gln233His	p.Q233H	ENST00000261937	NM_182925.4	233	caG/caC																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323253	31323253	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	85	425	0	ENST00000412585.2:c.736G>T	p.Glu246Ter	p.E246*	ENST00000412585	NM_005514.6	246	Gag/Tag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69129891	69129891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	58	351	0	ENST00000288368.4:c.4645G>T	p.Ala1549Ser	p.A1549S	ENST00000288368	NM_024870.2	1549	Gcc/Tcc																																																																															
ATRX	546	MSKCC	GRCh37	X	76939769	76939769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	145	321	0	ENST00000373344.5:c.979G>A	p.Glu327Lys	p.E327K	ENST00000373344	NM_000489.3	327	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	18	448	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CBFB	865	MSKCC	GRCh37	16	67063666	67063666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	29	623	0	ENST00000412916.2:c.115G>A	p.Glu39Lys	p.E39K	ENST00000412916		39	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	122	884	0	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061459	38061459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	106	751	1	ENST00000250448.2:c.530C>T	p.Ser177Leu	p.S177L	ENST00000250448	NM_004496.3	177	tCg/tTg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73347949	73347949	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	49	382	0	ENST00000377767.4:c.1112A>T	p.His371Leu	p.H371L	ENST00000377767	NM_014953.3	371	cAt/cTt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143181714	143181714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	30	601	0	ENST00000262992.4:c.619G>A	p.Ala207Thr	p.A207T	ENST00000262992	NM_001101669.1	207	Gcc/Acc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79950593	79950593	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0022865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	96	751	0	ENST00000265081.6:c.47C>G	p.Ser16Ter	p.S16*	ENST00000265081	NM_002439.4	16	tCa/tGa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0022747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	173	342	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118704	115118706	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0022747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	138	610	0	ENST00000257566.3:c.635_637del	p.Asn212del	p.N212del	ENST00000257566	NM_016569.3	212	aACAtt/att																																																																															
ATM	472	MSKCC	GRCh37	11	108198382	108198382	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	78	504	0	ENST00000278616.4:c.6986G>T	p.Ser2329Ile	p.S2329I	ENST00000278616	NM_000051.3	2329	aGc/aTc																																																																															
CDH1	999	MSKCC	GRCh37	16	68771355	68771381	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGCTGCTGCAGGTACCCCGGATCCCC	CTGCTGCTGCAGGTACCCCGGATCCCC	-			P-0022747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	93	505	0	ENST00000261769.5:c.37_48+15del		p.X13_splice	ENST00000261769	NM_004360.3	13																																																																																
RAD50	10111	MSKCC	GRCh37	5	131923368	131923368	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	50	226	0	ENST00000265335.6:c.871G>C	p.Glu291Gln	p.E291Q	ENST00000265335		291	Gag/Cag																																																																															
PMS2	5395	MSKCC	GRCh37	7	6038756	6038756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	185	709	1	ENST00000265849.7:c.688G>A	p.Val230Met	p.V230M	ENST00000265849	NM_000535.5	230	Gtg/Atg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73346338	73346338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	9	599	0	ENST00000377767.4:c.1462G>A	p.Asp488Asn	p.D488N	ENST00000377767	NM_014953.3	488	Gat/Aat																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856167	111856167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	33	486	2	ENST00000341259.2:c.218G>A	p.Arg73His	p.R73H	ENST00000341259	NM_005475.2	73	cGc/cAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56189387	56189387	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	93	688	0	ENST00000399503.3:c.4421delC	p.Pro1474LeufsTer16	p.P1474Lfs*16	ENST00000399503	NM_005921.1	1473	atC/at																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197700	123197700	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0022869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	13	478	0	ENST00000218089.9:c.1824T>A	p.His608Gln	p.H608Q	ENST00000218089	NM_001042749.1	608	caT/caA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0022687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	23	912	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0022687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	35	912	3	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
BIRC3	330	MSKCC	GRCh37	11	102201930	102201931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGAGAG			P-0022687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	33	423	0	ENST00000263464.3:c.1286_1287insGAGGGGA	p.Glu430ArgfsTer10	p.E430Rfs*10	ENST00000263464	NM_001165.4	428	agg/aGGGAGAGgg																																																																															
CCND3	896	MSKCC	GRCh37	6	41903707	41903707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	155	958	5	ENST00000372991.4:c.850C>T	p.Pro284Ser	p.P284S	ENST00000372991	NM_001760.3	284	Cct/Tct																																																																															
ROS1	6098	MSKCC	GRCh37	6	117677896	117677896	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	178	697	27	ENST00000368508.3:c.4037A>T	p.Asn1346Ile	p.N1346I	ENST00000368508	NM_002944.2	1346	aAc/aTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	201	566	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249503	153249503	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	122	534	0	ENST00000281708.4:c.1275G>C	p.Trp425Cys	p.W425C	ENST00000281708	NM_033632.3	425	tgG/tgC																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119966	70120018	+	frameshift_variant	Frame_Shift_Del	DEL	GCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	GCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	-			P-0022734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	57	301	0	ENST00000245479.2:c.970_1022del	p.Thr324AlafsTer236	p.T324Afs*236	ENST00000245479	NM_000346.3	323	aGCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG/a																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965809	25965809	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1285225904		P-0022734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	212	601	0	ENST00000435504.4:c.3397C>T	p.Arg1133Trp	p.R1133W	ENST00000435504		1133	Cgg/Tgg																																																																															
KIT	3815	MSKCC	GRCh37	4	55603417	55603417	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	42	337	0	ENST00000288135.5:c.2773G>T	p.Glu925Ter	p.E925*	ENST00000288135	NM_000222.2	925	Gag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175394	112175395	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	65	242	0	ENST00000257430.4:c.4103_4104insT	p.Pro1369ThrfsTer6	p.P1369Tfs*6	ENST00000257430	NM_000038.5	1368	aca/acTa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048896	180048896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	242	635	0	ENST00000261937.6:c.1666G>A	p.Asp556Asn	p.D556N	ENST00000261937	NM_182925.4	556	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0022873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	259	794	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0022873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	87	293	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
POLE	5426	MSKCC	GRCh37	12	133256141	133256141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	98	657	1	ENST00000320574.5:c.520G>A	p.Val174Met	p.V174M	ENST00000320574	NM_006231.2	174	Gtg/Atg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138382756	138382756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	86	577	2	ENST00000289153.2:c.2788del	p.Thr930LeufsTer62	p.T930Lfs*62	ENST00000289153	NM_006219.2	930	Act/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7578408	7578434	+	inframe_deletion	In_Frame_Del	DEL	CCTCACAACCTCCGTCATGTGCTGTGA	CCTCACAACCTCCGTCATGTGCTGTGA	-			P-0022873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	72	759	0	ENST00000269305.4:c.496_522del	p.Ser166_Arg174del	p.S166_R174del	ENST00000269305	NM_001126112.2	166	TCACAGCACATGACGGAGGTTGTGAGG/-																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10284577	10284577	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	72	574	0	ENST00000340748.4:c.605A>G	p.Glu202Gly	p.E202G	ENST00000340748		202	gAg/gGg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385230	41385230	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1096	73	706	0	ENST00000373198.4:c.731A>C	p.Asn244Thr	p.N244T	ENST00000373198	NM_133170.3	244	aAc/aCc																																																																															
BCL6	604	MSKCC	GRCh37	3	187446156	187446156	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	73	829	0	ENST00000232014.4:c.1532C>G	p.Ser511Cys	p.S511C	ENST00000232014	NM_001130845.1	511	tCt/tGt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31451736	31451736	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	48	404	0	ENST00000344624.3:c.2586G>T	p.Met862Ile	p.M862I	ENST00000344624		862	atG/atT																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992762	68992762	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	169	792	0	ENST00000288368.4:c.1727A>T	p.His576Leu	p.H576L	ENST00000288368	NM_024870.2	576	cAt/cTt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249857	110249857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	179	734	4	ENST00000374672.4:c.818C>T	p.Thr273Met	p.T273M	ENST00000374672	NM_004235.4	273	aCg/aTg																																																																															
ABL1	25	MSKCC	GRCh37	9	133759590	133759590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	35	850	1	ENST00000318560.5:c.1913G>A	p.Gly638Asp	p.G638D	ENST00000318560	NM_005157.4	638	gGc/gAc																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0022839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	169	440	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56780684	56780684	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	196	513	0	ENST00000337432.4:c.699C>G	p.His233Gln	p.H233Q	ENST00000337432	NM_058216.2	233	caC/caG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0022843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	205	512	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47707894	47707894	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	47	478	0	ENST00000233146.2:c.2518G>C	p.Val840Leu	p.V840L	ENST00000233146	NM_000251.2	840	Gta/Cta																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858119	152858119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	130	727	3	ENST00000406277.2:c.496G>A	p.Val166Ile	p.V166I	ENST00000406277	NM_152274.4	166	Gtc/Atc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106697	27106697	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1292	341	743	2	ENST00000324856.7:c.6308T>G	p.Phe2103Cys	p.F2103C	ENST00000324856	NM_006015.4	2103	tTt/tGt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740256	162740256	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	532	479	0	ENST00000367921.3:c.1458G>C	p.Arg486Ser	p.R486S	ENST00000367921	NM_006182.2	486	agG/agC																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176153800	176153800	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	92	561	0	ENST00000367669.3:c.436G>T	p.Ala146Ser	p.A146S	ENST00000367669	NM_022457.5	146	Gca/Tca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720762	89720767	+	frameshift_variant	Frame_Shift_Del	DEL	AGTATA	AGTATA	TT			P-0022715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12	22	213	0	ENST00000371953.3:c.913_918delinsTT	p.Ser305LeufsTer11	p.S305Lfs*11	ENST00000371953	NM_000314.4	305	AGTATA/TT																																																																															
RB1	5925	MSKCC	GRCh37	13	48878176	48878185	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CTCTCGTCAG	CTCTCGTCAG	-			P-0022715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	327	404	0	ENST00000267163.4:c.128_137del	p.Pro43ArgfsTer19	p.P43Rfs*19	ENST00000267163	NM_000321.2	43	cCTCTCGTCAGg/cg																																																																															
RB1	5925	MSKCC	GRCh37	13	48953745	48953746	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	260	370	0	ENST00000267163.4:c.1350dup	p.Arg451SerfsTer12	p.R451Sfs*12	ENST00000267163	NM_000321.2	450	gtt/gTtt																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88669508	88669508	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	290	687	1	ENST00000360948.2:c.1390A>C	p.Met464Leu	p.M464L	ENST00000360948	NM_001012338.2	464	Atg/Ctg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467119	99467119	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	247	477	0	ENST00000268035.6:c.2500A>T	p.Ile834Phe	p.I834F	ENST00000268035	NM_000875.3	834	Att/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	1249	990	2	ENST00000269305.4:c.470T>G	p.Val157Gly	p.V157G	ENST00000269305	NM_001126112.2	157	gTc/gGc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866610	37866610	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	342	696	0	ENST00000269571.5:c.777C>G	p.Asn259Lys	p.N259K	ENST00000269571		259	aaC/aaG																																																																															
CIC	23152	MSKCC	GRCh37	19	42795061	42795061	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1157	792	1185	3	ENST00000575354.2:c.2141G>T	p.Gly714Val	p.G714V	ENST00000575354	NM_015125.3	714	gGg/gTg																																																																															
ALK	238	MSKCC	GRCh37	2	30143179	30143179	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	515	795	0	ENST00000389048.3:c.347C>A	p.Ala116Asp	p.A116D	ENST00000389048	NM_004304.4	116	gCc/gAc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55129833	55129833	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0022715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	178	541	0	ENST00000257290.5:c.368-1G>C		p.X123_splice	ENST00000257290	NM_006206.4	123																																																																																
HIST1H3D	8351	MSKCC	GRCh37	6	26197163	26197163	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	494	633	0	ENST00000356476.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000356476		106	Gag/Cag																																																																															
LATS1	9113	MSKCC	GRCh37	6	149997741	149997741	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	266	559	0	ENST00000253339.5:c.2726C>G	p.Ser909Cys	p.S909C	ENST00000253339		909	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0022760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	108	703	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	127	711	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0022760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	61	533	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47058705	47058706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	57	655	0	ENST00000409792.3:c.7572dup	p.Lys2525Ter	p.K2525*	ENST00000409792	NM_014159.6	2524	-/T																																																																															
RB1	5925	MSKCC	GRCh37	13	48951168	48951168	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0022760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	105	506	0	ENST00000267163.4:c.1330C>T	p.Gln444Ter	p.Q444*	ENST00000267163	NM_000321.2	444	Cag/Tag																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245511	41245511	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	69	859	0	ENST00000357654.3:c.2037G>T	p.Lys679Asn	p.K679N	ENST00000357654	NM_007294.3	679	aaG/aaT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212522485	212522485	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	27	522	0	ENST00000342788.4:c.1940A>G	p.His647Arg	p.H647R	ENST00000342788	NM_005235.2	647	cAt/cGt																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149435833	149435833	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	61	767	0	ENST00000286301.3:c.2391C>G	p.Phe797Leu	p.F797L	ENST00000286301	NM_005211.3	797	ttC/ttG																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	734	758	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0022761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	414	899	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52702657	52702657	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	225	469	1	ENST00000394830.3:c.241C>T	p.Gln81Ter	p.Q81*	ENST00000394830	NM_018313.4	81	Caa/Taa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123256138	123256138	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	230	884	0	ENST00000358487.5:c.1771A>C	p.Asn591His	p.N591H	ENST00000358487	NM_000141.4	591	Aac/Cac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15960892	15960892	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	141	469	0	ENST00000268712.3:c.6328G>C	p.Val2110Leu	p.V2110L	ENST00000268712	NM_006311.3	2110	Gtc/Ctc																																																																															
LYN	4067	MSKCC	GRCh37	8	56922658	56922658	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	311	818	0	ENST00000519728.1:c.1528C>G	p.Gln510Glu	p.Q510E	ENST00000519728	NM_002350.3	510	Cag/Gag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	168	550	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	197	831	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061327	38061327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	215	920	2	ENST00000250448.2:c.662C>T	p.Ser221Leu	p.S221L	ENST00000250448	NM_004496.3	221	tCg/tTg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12660154	12660154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	121	856	0	ENST00000251849.4:c.67G>A	p.Asp23Asn	p.D23N	ENST00000251849	NM_002880.3	23	Gat/Aat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928074	178928074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	265	761	0	ENST00000263967.3:c.1352G>T	p.Gly451Val	p.G451V	ENST00000263967	NM_006218.2	451	gGa/gTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	186	629	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0022691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			830	100	928	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0022691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			383	28	398	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112154942	112154942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			844	96	812	0	ENST00000257430.4:c.1213C>T	p.Arg405Ter	p.R405*	ENST00000257430	NM_000038.5	405	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920435	114920435	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			679	44	617	0	ENST00000543371.1:c.1376G>T	p.Trp459Leu	p.W459L	ENST00000543371	NM_001198531.1	459	tGg/tTg																																																																															
ATR	545	MSKCC	GRCh37	3	142285059	142285059	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			641	36	615	0	ENST00000350721.4:c.196G>C	p.Val66Leu	p.V66L	ENST00000350721	NM_001184.3	66	Gtg/Ctg																																																																															
APC	324	MSKCC	GRCh37	5	112177149	112177149	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	52	465	0	ENST00000257430.4:c.5858A>G	p.Asn1953Ser	p.N1953S	ENST00000257430	NM_000038.5	1953	aAt/aGt																																																																															
PARK2	5071	MSKCC	GRCh37	6	162394436	162394436	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			491	51	526	0	ENST00000366898.1:c.632A>C	p.Lys211Thr	p.K211T	ENST00000366898	NM_004562.2	211	aAa/aCa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0022763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	356	658	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9782369	9782369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	129	890	1	ENST00000377346.4:c.2302G>A	p.Ala768Thr	p.A768T	ENST00000377346	NM_005026.3	768	Gca/Aca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992043	72992043	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	53	842	0	ENST00000268489.5:c.2002T>C	p.Cys668Arg	p.C668R	ENST00000268489	NM_006885.3	668	Tgt/Cgt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348743	89348743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1238	194	1131	0	ENST00000301030.4:c.4207G>A	p.Gly1403Arg	p.G1403R	ENST00000301030	NM_001256183.1	1403	Gga/Aga																																																																															
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	469	899	1	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																															
RET	5979	MSKCC	GRCh37	10	43600475	43600475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1462	84	789	0	ENST00000355710.3:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000355710	NM_020975.4	234	cGg/cAg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73336073	73336073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	11	317	0	ENST00000377767.4:c.2330C>T	p.Ser777Leu	p.S777L	ENST00000377767	NM_014953.3	777	tCa/tTa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114102	115114156	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTGACATGGTTTACCTTTGAGGTTCGATGTCCCTACAGTGGAGGCGGCTGGAG	AGGTGACATGGTTTACCTTTGAGGTTCGATGTCCCTACAGTGGAGGCGGCTGGAG	-			P-0022718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	323	458	0	ENST00000257566.3:c.1061_1099+16del		p.X354_splice	ENST00000257566	NM_016569.3	354																																																																																
HIST1H3I	8354	MSKCC	GRCh37	6	27839759	27839759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	510	684	0	ENST00000328488.2:c.335C>T	p.Ala112Val	p.A112V	ENST00000328488	NM_003533.2	112	gCc/gTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873843	151873843	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	330	603	0	ENST00000262189.6:c.8695C>T	p.Gln2899Ter	p.Q2899*	ENST00000262189	NM_170606.2	2899	Caa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	487	786	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0022766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	117	444	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45423058	45423058	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	118	448	0	ENST00000262160.6:c.70G>T	p.Gly24Trp	p.G24W	ENST00000262160	NM_005901.5	24	Ggg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730801	40730801	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	291	791	0	ENST00000373198.4:c.3734G>T	p.Gly1245Val	p.G1245V	ENST00000373198	NM_133170.3	1245	gGa/gTa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44527604	44527604	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0022766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	118	724	0	ENST00000291552.4:c.1A>G	p.Met1?	p.M1?	ENST00000291552	NM_006758.2	1	Atg/Gtg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143159022	143159022	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	137	430	0	ENST00000262992.4:c.831G>T	p.Leu277Phe	p.L277F	ENST00000262992	NM_001101669.1	277	ttG/ttT																																																																															
MYC	4609	MSKCC	GRCh37	8	128751131	128751131	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	151	847	0	ENST00000377970.2:c.668G>T	p.Cys223Phe	p.C223F	ENST00000377970	NM_002467.4	223	tGc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	375	646	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	148	907	2	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag																																																																															
BRAF	673	MSKCC	GRCh37	7	140508735	140508735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	78	710	1	ENST00000288602.6:c.565G>T	p.Gly189Cys	p.G189C	ENST00000288602	NM_004333.4	189	Ggt/Tgt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162724995	162724995	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	44	567	0	ENST00000367921.3:c.467A>G	p.Glu156Gly	p.E156G	ENST00000367921	NM_006182.2	156	gAg/gGg																																																																															
MGA	23269	MSKCC	GRCh37	15	42052680	42052680	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	69	694	0	ENST00000219905.7:c.7351G>T	p.Gly2451Ter	p.G2451*	ENST00000219905	NM_001164273.1	2451	Gga/Tga																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11349170	11349170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	30	329	0	ENST00000332029.2:c.166C>T	p.Arg56Cys	p.R56C	ENST00000332029	NM_003745.1	56	Cgc/Tgc																																																																															
AURKB	9212	MSKCC	GRCh37	17	8111083	8111083	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	145	891	0	ENST00000585124.1:c.124A>G	p.Met42Val	p.M42V	ENST00000585124	NM_004217.3	42	Atg/Gtg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2217801	2217801	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	82	928	0	ENST00000398665.3:c.2575G>T	p.Gly859Trp	p.G859W	ENST00000398665	NM_032482.2	859	Ggg/Tgg																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792867	33792867	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	51	443	0	ENST00000498907.2:c.454G>C	p.Ala152Pro	p.A152P	ENST00000498907	NM_004364.3	152	Gcg/Ccg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733328	40733328	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	57	501	0	ENST00000373198.4:c.3478C>G	p.Leu1160Val	p.L1160V	ENST00000373198	NM_133170.3	1160	Ctg/Gtg																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62326835	62326835	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0022723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	117	1020	0	ENST00000508582.2:c.3724+2T>A		p.X1242_splice	ENST00000508582		1242																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106526658	106526658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	85	604	0	ENST00000359195.3:c.2951C>T	p.Pro984Leu	p.P984L	ENST00000359195	NM_002649.2	984	cCa/cTa																																																																															
SMO	6608	MSKCC	GRCh37	7	128851936	128851936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	91	860	0	ENST00000249373.3:c.2008G>A	p.Gly670Ser	p.G670S	ENST00000249373	NM_005631.4	670	Ggc/Agc																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139818370	139818370	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	125	844	0	ENST00000247668.2:c.1205G>T	p.Gly402Val	p.G402V	ENST00000247668	NM_021138.3	402	gGg/gTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	67	432	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	101	771	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71008398	71008398	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0022739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	73	424	0	ENST00000318789.4:c.2034A>G	p.Ter678TrpextTer51	p.*678Wext*51	ENST00000318789	NM_032682.5	678	tgA/tgG																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	143	759	1	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																															
HIST2H3D	653604	MSKCC	GRCh37	1	149784833	149784833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	33	270	0	ENST00000331491.1:c.404G>A	p.Arg135Gln	p.R135Q	ENST00000331491	NM_001123375.2	135	cGg/cAg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114116	115114117	+	splice_donor_variant	Splice_Site	INS	-	-	C			P-0022767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	97	544	0	ENST00000257566.3:c.1099+1dup		p.X367_splice	ENST00000257566	NM_016569.3	367																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	17	728	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0022848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	324	729	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0022848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	158	843	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
JAK1	3716	MSKCC	GRCh37	1	65321369	65321369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	58	677	0	ENST00000342505.4:c.1471G>A	p.Ala491Thr	p.A491T	ENST00000342505	NM_002227.2	491	Gcc/Acc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65321371	65321371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	57	664	0	ENST00000342505.4:c.1469G>T	p.Gly490Val	p.G490V	ENST00000342505	NM_002227.2	490	gGt/gTt																																																																															
JAK1	3716	MSKCC	GRCh37	1	65321375	65321375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	57	654	0	ENST00000342505.4:c.1465C>A	p.Gln489Lys	p.Q489K	ENST00000342505	NM_002227.2	489	Cag/Aag																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3827631	3827631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	39	682	0	ENST00000262367.5:c.2141G>T	p.Arg714Leu	p.R714L	ENST00000262367	NM_004380.2	714	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579380	7579396	+	frameshift_variant	Frame_Shift_Del	DEL	AGGTTTTCTGGGAAGGG	AGGTTTTCTGGGAAGGG	-			P-0022848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	56	866	1	ENST00000269305.4:c.291_307del	p.Ser99GlyfsTer44	p.S99Gfs*44	ENST00000269305	NM_001126112.2	97	gtCCCTTCCCAGAAAACCTac/gtac																																																																															
APC	324	MSKCC	GRCh37	5	112174577	112174577	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587783029		P-0022758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	90	631	0	ENST00000257430.4:c.3286C>T	p.Gln1096Ter	p.Q1096*	ENST00000257430	NM_000038.5	1096	Cag/Tag																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645693	12645693	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	48	432	0	ENST00000251849.4:c.776C>G	p.Ser259Cys	p.S259C	ENST00000251849	NM_002880.3	259	tCc/tGc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69031691	69031691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	213	770	3	ENST00000288368.4:c.3446G>A	p.Arg1149His	p.R1149H	ENST00000288368	NM_024870.2	1149	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108151890	108151890	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	68	548	0	ENST00000278616.4:c.3571A>G	p.Lys1191Glu	p.K1191E	ENST00000278616	NM_000051.3	1191	Aaa/Gaa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161968	47161968	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	33	581	0	ENST00000409792.3:c.4158del	p.Asp1388IlefsTer6	p.D1388Ifs*6	ENST00000409792	NM_014159.6	1386	aaG/aa																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026184	71026184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	76	601	0	ENST00000318789.4:c.1438G>A	p.Glu480Lys	p.E480K	ENST00000318789	NM_032682.5	480	Gaa/Aaa																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27840014	27840014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	79	575	0	ENST00000328488.2:c.80G>T	p.Arg27Leu	p.R27L	ENST00000328488	NM_003533.2	27	cGc/cTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860673	151860673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	100	758	0	ENST00000262189.6:c.9989C>T	p.Pro3330Leu	p.P3330L	ENST00000262189	NM_170606.2	3330	cCc/cTc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104673	69104673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	285	816	0	ENST00000288368.4:c.4517C>T	p.Ser1506Phe	p.S1506F	ENST00000288368	NM_024870.2	1506	tCt/tTt																																																																															
AR	367	MSKCC	GRCh37	X	66765974	66765974	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	145	519	0	ENST00000374690.3:c.986G>C	p.Gly329Ala	p.G329A	ENST00000374690	NM_000044.3	329	gGc/gCc																																																																															
HGF	3082	MSKCC	GRCh37	7	81335628	81335628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	85	563	0	ENST00000222390.5:c.1732G>T	p.Asp578Tyr	p.D578Y	ENST00000222390	NM_000601.4	578	Gat/Tat																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139820303	139820303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	115	787	0	ENST00000247668.2:c.1456C>T	p.Arg486Trp	p.R486W	ENST00000247668	NM_021138.3	486	Cgg/Tgg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39937117	39937117	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	64	926	0	ENST00000378444.4:c.66G>T	p.Met22Ile	p.M22I	ENST00000378444	NM_001123385.1	22	atG/atT																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112164	115112164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	58	875	1	ENST00000257566.3:c.1576G>A	p.Ala526Thr	p.A526T	ENST00000257566	NM_016569.3	526	Gcc/Acc																																																																															
DICER1	23405	MSKCC	GRCh37	14	95566172	95566172	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	48	670	0	ENST00000343455.3:c.4151del	p.Gly1384ValfsTer3	p.G1384Vfs*3	ENST00000343455	NM_177438.2	1384	gGt/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577101	7577102	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0022716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	108	880	0	ENST00000269305.4:c.836_837delinsAT	p.Gly279Asp	p.G279D	ENST00000269305	NM_001126112.2	279	gGG/gAT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600471	10600471	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	156	822	0	ENST00000171111.5:c.1384G>C	p.Gly462Arg	p.G462R	ENST00000171111	NM_203500.1	462	Ggg/Cgg																																																																															
XPO1	7514	MSKCC	GRCh37	2	61721190	61721190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	90	559	0	ENST00000401558.2:c.1084G>A	p.Glu362Lys	p.E362K	ENST00000401558	NM_003400.3	362	Gaa/Aaa																																																																															
EP300	2033	MSKCC	GRCh37	22	41546073	41546073	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	206	734	0	ENST00000263253.7:c.2688A>C	p.Gln896His	p.Q896H	ENST00000263253	NM_001429.3	896	caA/caC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	190	776	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89815074	89815074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	42	645	0	ENST00000389301.3:c.3341C>G	p.Ser1114Cys	p.S1114C	ENST00000389301	NM_000135.2	1114	tCt/tGt																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212652822	212652822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	96	647	0	ENST00000342788.4:c.484C>T	p.His162Tyr	p.H162Y	ENST00000342788	NM_005235.2	162	Cat/Tat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178948071	178948071	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	60	502	0	ENST00000263967.3:c.2843A>C	p.Lys948Thr	p.K948T	ENST00000263967	NM_006218.2	948	aAa/aCa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980503	70980503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	119	865	1	ENST00000276594.2:c.874G>A	p.Glu292Lys	p.E292K	ENST00000276594	NM_024504.3	292	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577131	7577140	+	protein_altering_variant	In_Frame_Del	DEL	GCTGTTCCGT	GCTGTTCCGT	A			P-0022808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	102	753	0	ENST00000269305.4:c.798_807delinsT	p.Arg267_Ser269del	p.R267_S269del	ENST00000269305	NM_001126112.2	266	ggACGGAACAGC/ggT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	74	749	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106710	27106710	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	66	725	1	ENST00000324856.7:c.6324del	p.Asn2109MetfsTer26	p.N2109Mfs*26	ENST00000324856	NM_006015.4	2107	ggC/gg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77047232	77047232	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	80	681	1	ENST00000356341.3:c.1312C>T	p.Arg438Ter	p.R438*	ENST00000356341	NM_002576.4	438	Cga/Tga																																																																															
FLT1	2321	MSKCC	GRCh37	13	28896455	28896455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	72	574	1	ENST00000282397.4:c.2995C>A	p.Leu999Met	p.L999M	ENST00000282397	NM_002019.4	999	Ctg/Atg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28971157	28971157	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	54	627	0	ENST00000282397.4:c.1600A>T	p.Ile534Phe	p.I534F	ENST00000282397	NM_002019.4	534	Att/Ttt																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641155	23641155	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	96	790	0	ENST00000261584.4:c.2320A>G	p.Lys774Glu	p.K774E	ENST00000261584	NM_024675.3	774	Aaa/Gaa																																																																															
STK11	6794	MSKCC	GRCh37	19	1219391	1219391	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	76	769	0	ENST00000326873.7:c.443T>C	p.Phe148Ser	p.F148S	ENST00000326873	NM_000455.4	148	tTc/tCc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2206758	2206758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	87	673	0	ENST00000398665.3:c.818C>A	p.Ala273Glu	p.A273E	ENST00000398665	NM_032482.2	273	gCa/gAa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226504	2226504	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	99	943	0	ENST00000398665.3:c.3984A>T	p.Leu1328Phe	p.L1328F	ENST00000398665	NM_032482.2	1328	ttA/ttT																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15298005	15298005	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	83	929	2	ENST00000263388.2:c.1751A>G	p.Asp584Gly	p.D584G	ENST00000263388	NM_000435.2	584	gAc/gGc																																																																															
ERF	2077	MSKCC	GRCh37	19	42752648	42752648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	124	743	0	ENST00000222329.4:c.1616C>T	p.Ala539Val	p.A539V	ENST00000222329	NM_006494.2	539	gCc/gTc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99156038	99156038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	90	750	0	ENST00000074304.5:c.718G>A	p.Gly240Ser	p.G240S	ENST00000074304	NM_001134224.1	240	Ggt/Agt																																																																															
KIT	3815	MSKCC	GRCh37	4	55524211	55524211	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	70	737	0	ENST00000288135.5:c.30T>A	p.Phe10Leu	p.F10L	ENST00000288135	NM_000222.2	10	ttT/ttA																																																																															
KDR	3791	MSKCC	GRCh37	4	55964343	55964343	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	71	663	0	ENST00000263923.4:c.2470G>T	p.Ala824Ser	p.A824S	ENST00000263923	NM_002253.2	824	Gcc/Tcc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0022809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	676	805	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0022809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	197	887	1	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259554	55259554	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	643	777	0	ENST00000275493.2:c.2612C>G	p.Ala871Gly	p.A871G	ENST00000275493	NM_005228.3	871	gCa/gGa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129574	2129574	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	187	961	0	ENST00000219476.3:c.3301C>A	p.His1101Asn	p.H1101N	ENST00000219476	NM_000548.3	1101	Cat/Aat																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918125	50918127	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs763850764		P-0022809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	164	976	0	ENST00000440232.2:c.2446_2448del	p.Ser816del	p.S816del	ENST00000440232	NM_002691.3	814	ttCTCc/ttc																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673635	30673635	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	190	925	0	ENST00000376406.3:c.3325A>T	p.Thr1109Ser	p.T1109S	ENST00000376406	NM_014641.2	1109	Act/Tct																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020657	37020657	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	129	626	0	ENST00000358127.4:c.188G>C	p.Gly63Ala	p.G63A	ENST00000358127	NM_001280556.1	63	gGt/gCt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	23	775	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579357	7579358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTTT			P-0022793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	28	780	0	ENST00000269305.4:c.329_330insAAAG	p.Leu111LysfsTer39	p.L111Kfs*39	ENST00000269305	NM_001126112.2	110	cgt/cgAAAGt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126409	5126409	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	27	503	0	ENST00000381652.3:c.3254A>G	p.Asn1085Ser	p.N1085S	ENST00000381652	NM_004972.3	1085	aAt/aGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	39	490	0	ENST00000304494.5:c.341C>G	p.Pro114Arg	p.P114R	ENST00000304494	NM_000077.4	114	cCc/cGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0022409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	214	948	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0022409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	88	550	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157469898	157469898	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	402	743	0	ENST00000346085.5:c.2692C>T	p.Arg898Ter	p.R898*	ENST00000346085	NM_020732.3	898	Cga/Tga																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11923761	11924268	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	TGTGTTAGCGACTGGAGGAGAAAGGGATCCCTGGGATCCTTTTCAGCTTTACTATTCTGATTTGGGGTTCTGAGATTCCAACAAAGTGGACTTTTGGGAGTCACAGACCTCCATGGGAATGATGAAAGCTGCGTACCTTCTTTCCGCACAAATGCAGGCCCACCTTTAATTCTGCAAACCACTTTAGGCCCCGCGGGCCCGCAGCCCTGGTCCAAGACAGCTGTCTGCTTCACAGGTCGCGCACCCAGAGCCGGGCGGTTCTGCAGCTCAGCATCTGGCCCGGGCTGCGCGTCGGGCTCTGGCGGGGGCGTGTCAGGAGGCGTGTCCGGGGCGTGTCGGAGGCGGGGCCAAGGCGGGGGTAAGCCTCGCCCCTCGGCCGTGCGAGAGGCCGAGCTTGCTGCATTGCAGCCGCCGCGGCGCCGCTCGGCTCTTCACTCCCAACAATGGCGGCTCCGAGCCCGAGCGGCGGCGGCGGCTCCGGGGGCGGCAGCGGCAGCGGCACCCCCGG	TGTGTTAGCGACTGGAGGAGAAAGGGATCCCTGGGATCCTTTTCAGCTTTACTATTCTGATTTGGGGTTCTGAGATTCCAACAAAGTGGACTTTTGGGAGTCACAGACCTCCATGGGAATGATGAAAGCTGCGTACCTTCTTTCCGCACAAATGCAGGCCCACCTTTAATTCTGCAAACCACTTTAGGCCCCGCGGGCCCGCAGCCCTGGTCCAAGACAGCTGTCTGCTTCACAGGTCGCGCACCCAGAGCCGGGCGGTTCTGCAGCTCAGCATCTGGCCCGGGCTGCGCGTCGGGCTCTGGCGGGGGCGTGTCAGGAGGCGTGTCCGGGGCGTGTCGGAGGCGGGGCCAAGGCGGGGGTAAGCCTCGCCCCTCGGCCGTGCGAGAGGCCGAGCTTGCTGCATTGCAGCCGCCGCGGCGCCGCTCGGCTCTTCACTCCCAACAATGGCGGCTCCGAGCCCGAGCGGCGGCGGCGGCTCCGGGGGCGGCAGCGGCAGCGGCACCCCCGG	-			P-0022409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1	117	0	0				ENST00000353533	NM_003010.3																																																																																	
NF1	4763	MSKCC	GRCh37	17	29554626	29554626	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0022409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	108	418	0	ENST00000358273.4:c.2409+2T>G		p.X803_splice	ENST00000358273	NM_001042492.2	803																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10599871	10599871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	265	1000	0	ENST00000171111.5:c.1705C>T	p.Leu569Phe	p.L569F	ENST00000171111	NM_203500.1	569	Ctt/Ttt																																																																															
JAK3	3718	MSKCC	GRCh37	19	17950433	17950433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	227	841	1	ENST00000458235.1:c.1294C>T	p.Arg432Cys	p.R432C	ENST00000458235	NM_000215.3	432	Cgc/Tgc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93955112	93955112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	91	715	0	ENST00000369303.4:c.2786G>A	p.Gly929Glu	p.G929E	ENST00000369303	NM_004440.3	929	gGa/gAa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602746	10602746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1250	237	1156	0	ENST00000171111.5:c.832C>T	p.Pro278Ser	p.P278S	ENST00000171111	NM_203500.1	278	Ccg/Tcg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579485	7579485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	198	1099	2	ENST00000269305.4:c.202G>T	p.Glu68Ter	p.E68*	ENST00000269305	NM_001126112.2	68	Gag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023577	27023592	+	frameshift_variant	Frame_Shift_Del	DEL	CCTACGCGCTGAGCTC	CCTACGCGCTGAGCTC	-			P-0022819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1405	119	1093	0	ENST00000324856.7:c.685_700del	p.Tyr229ArgfsTer129	p.Y229Rfs*129	ENST00000324856	NM_006015.4	228	gCCTACGCGCTGAGCTCc/gc																																																																															
ATM	472	MSKCC	GRCh37	11	108124762	108124762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	18	440	0	ENST00000278616.4:c.2120C>G	p.Ser707Cys	p.S707C	ENST00000278616	NM_000051.3	707	tCt/tGt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982474	25982474	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	105	611	0	ENST00000435504.4:c.816G>T	p.Glu272Asp	p.E272D	ENST00000435504		272	gaG/gaT																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52676042	52676042	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	99	755	1	ENST00000394830.3:c.1015G>T	p.Gly339Ter	p.G339*	ENST00000394830	NM_018313.4	339	Gga/Tga																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143045869	143045870	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0022819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	73	733	0	ENST00000262992.4:c.1764_1765delinsAT	p.Asp589Tyr	p.D589Y	ENST00000262992	NM_001101669.1	588	aaGGac/aaATac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151947021	151947021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	24	727	0	ENST00000262189.6:c.1753G>A	p.Glu585Lys	p.E585K	ENST00000262189	NM_170606.2	585	Gaa/Aaa																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0022797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	129	427	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
MLH1	4292	MSKCC	GRCh37	3	37092047	37092047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	39	713	0	ENST00000231790.2:c.2174G>A	p.Arg725His	p.R725H	ENST00000231790	NM_000249.3	725	cGc/cAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0022797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	88	882	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	251	721	0	ENST00000269305.4:c.794T>C	p.Leu265Pro	p.L265P	ENST00000269305	NM_001126112.2	265	cTg/cCg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385182	41385182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	240	814	0	ENST00000373198.4:c.779G>A	p.Arg260Gln	p.R260Q	ENST00000373198	NM_133170.3	260	cGg/cAg																																																																															
KDR	3791	MSKCC	GRCh37	4	55972009	55972009	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	53	581	3	ENST00000263923.4:c.1635C>A	p.Phe545Leu	p.F545L	ENST00000263923	NM_002253.2	545	ttC/ttA																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0022814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	328	804	3	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114905788	114905788	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0022814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	167	683	0	ENST00000543371.1:c.807C>G	p.Tyr269Ter	p.Y269*	ENST00000543371	NM_001198531.1	269	taC/taG																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858985	57858985	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142957882		P-0022814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	189	850	6	ENST00000228682.2:c.481C>T	p.Arg161Trp	p.R161W	ENST00000228682	NM_005269.2	161	Cgg/Tgg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0022814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	418	898	2	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257633	19257633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	196	942	5	ENST00000162023.5:c.593C>T	p.Pro198Leu	p.P198L	ENST00000162023		198	cCc/cTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228778	36228778	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	172	786	1	ENST00000222270.7:c.7677G>T	p.Glu2559Asp	p.E2559D	ENST00000222270	NM_014727.1	2559	gaG/gaT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100975	41100975	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	297	690	2	ENST00000373198.4:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000373198	NM_133170.3	461	Cga/Tga																																																																															
KDR	3791	MSKCC	GRCh37	4	55958788	55958788	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780764266		P-0022814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	131	695	0	ENST00000263923.4:c.3065G>A	p.Arg1022Gln	p.R1022Q	ENST00000263923	NM_002253.2	1022	cGa/cAa																																																																															
APC	324	MSKCC	GRCh37	5	112174241	112174241	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	101	518	2	ENST00000257430.4:c.2950G>T	p.Glu984Ter	p.E984*	ENST00000257430	NM_000038.5	984	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0022818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	186	768	3	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0022818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	218	751	3	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535450	66535450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	93	709	0	ENST00000273854.3:c.11C>T	p.Ser4Leu	p.S4L	ENST00000273854	NM_004439.5	4	tCg/tTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261631	16261631	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	152	730	0	ENST00000375759.3:c.8896C>G	p.Leu2966Val	p.L2966V	ENST00000375759	NM_015001.2	2966	Ctt/Gtt																																																																															
PGR	5241	MSKCC	GRCh37	11	100999104	100999104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	58	877	1	ENST00000325455.5:c.698C>T	p.Ala233Val	p.A233V	ENST00000325455	NM_001202474.3	233	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	80	895	4	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	170	714	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324674	31324674	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11546719		P-0022801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	31	465	3	ENST00000412585.2:c.134G>A	p.Arg45His	p.R45H	ENST00000412585	NM_005514.6	45	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447333	49447333	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	219	833	2	ENST00000301067.7:c.765C>A	p.Cys255Ter	p.C255*	ENST00000301067	NM_003482.3	255	tgC/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0022590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1380	176	1496	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748455	162748455	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	24	184	0	ENST00000367921.3:c.2369C>A	p.Ser790Tyr	p.S790Y	ENST00000367921	NM_006182.2	790	tCc/tAc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476307	88476307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	110	985	1	ENST00000360948.2:c.1825G>A	p.Asp609Asn	p.D609N	ENST00000360948	NM_001012338.2	609	Gat/Aat																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0022637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	34	955	3	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118370100	118370100	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	52	392	0	ENST00000534358.1:c.6044A>G	p.Asn2015Ser	p.N2015S	ENST00000534358	NM_005933.3	2015	aAt/aGt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164064	47164064	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	44	430	0	ENST00000409792.3:c.2062A>C	p.Thr688Pro	p.T688P	ENST00000409792	NM_014159.6	688	Act/Cct																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495684	72495684	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	53	511	0	ENST00000477973.2:c.386T>G	p.Cys130Gly	p.C130G	ENST00000477973	NM_012234.5	130	Tgc/Ggc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0022571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	179	895	0	ENST00000269305.4:c.838A>T	p.Arg280Ter	p.R280*	ENST00000269305	NM_001126112.2	280	Aga/Tga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32950869	32950869	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	149	617	0	ENST00000380152.3:c.8695C>T	p.Gln2899Ter	p.Q2899*	ENST00000380152		2899	Caa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	133	458	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
JUN	3725	MSKCC	GRCh37	1	59248633	59248634	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0022568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	69	920	0	ENST00000371222.2:c.109_110delAG	p.Ser37HisfsTer69	p.S37Hfs*69	ENST00000371222	NM_002228.3	37	AGc/c																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0022568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	286	851	0	ENST00000269305.4:c.672+1delG		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118343017	118343017	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	57	313	0	ENST00000534358.1:c.1147del	p.Ala383LeufsTer17	p.A383Lfs*17	ENST00000534358	NM_005933.3	381	aaG/aa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434990	49434990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	83	561	1	ENST00000301067.7:c.6563G>A	p.Arg2188His	p.R2188H	ENST00000301067	NM_003482.3	2188	cGc/cAc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168684	56168687	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	-			P-0022568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	87	578	0	ENST00000399503.3:c.1539_1542del	p.Leu515GlufsTer41	p.L515Efs*41	ENST00000399503	NM_005921.1	513	tCTTCc/tc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0022598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	40	863	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	32	424	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443683	49443683	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	89	583	0	ENST00000301067.7:c.3688C>G	p.Pro1230Ala	p.P1230A	ENST00000301067	NM_003482.3	1230	Cca/Gca																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134724	41134724	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	30	364	0	ENST00000379561.5:c.904C>A	p.His302Asn	p.H302N	ENST00000379561	NM_002015.3	302	Cac/Aac																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7980356	7980356	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	116	536	0	ENST00000319144.4:c.1227C>G	p.Phe409Leu	p.F409L	ENST00000319144	NM_001139.2	409	ttC/ttG																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799734	72799734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	41	597	0	ENST00000325599.8:c.1435G>A	p.Glu479Lys	p.E479K	ENST00000325599	NM_018130.2	479	Gaa/Aaa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520088	106520088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	12	402	0	ENST00000359195.3:c.2516G>A	p.Arg839His	p.R839H	ENST00000359195	NM_002649.2	839	cGc/cAc																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554371	141554371	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	305	765	0	ENST00000220592.5:c.1780C>G	p.Leu594Val	p.L594V	ENST00000220592	NM_012154.3	594	Ctg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577557	7577557	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	11	735	0	ENST00000269305.4:c.724T>C	p.Cys242Arg	p.C242R	ENST00000269305	NM_001126112.2	242	Tgc/Cgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0022659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	13	640	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	13	457	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578175	7578175	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0022599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	25	709	0	ENST00000269305.4:c.672+2T>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0022644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	62	565	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0022644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	316	708	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692968	89692968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	17	577	1	ENST00000371953.3:c.452C>A	p.Ala151Asp	p.A151D	ENST00000371953	NM_000314.4	151	gCc/gAc																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165659	118165659	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	28	375	0	ENST00000369448.3:c.169A>T	p.Ser57Cys	p.S57C	ENST00000369448	NM_017709.3	57	Agt/Tgt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691933	30691934	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	65	446	0	ENST00000359013.4:c.510_511insT	p.Asn171Ter	p.N171*	ENST00000359013	NM_001024847.2	170	-/T																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0022667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	264	722	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0022667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	238	528	2	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0022667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	157	370	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925634	114925641	+	frameshift_variant	Frame_Shift_Del	DEL	CAATTGCA	CAATTGCA	-			P-0022667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	114	777	0	ENST00000543371.1:c.1714_1721del	p.Ile572AlafsTer34	p.I572Afs*34	ENST00000543371	NM_001198531.1	571	tCAATTGCA/t																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066509	94066509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	100	346	0	ENST00000369303.4:c.1250C>T	p.Ala417Val	p.A417V	ENST00000369303	NM_004440.3	417	gCt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	344	800	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0022783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	387	711	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112170862	112170862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0022783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	237	505	0	ENST00000257430.4:c.1958G>A	p.Arg653Lys	p.R653K	ENST00000257430	NM_000038.5	653	aGg/aAg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162725021	162725021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	176	529	0	ENST00000367921.3:c.493C>T	p.Arg165Trp	p.R165W	ENST00000367921	NM_006182.2	165	Cgg/Tgg																																																																															
KDR	3791	MSKCC	GRCh37	4	55955094	55955094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	162	618	0	ENST00000263923.4:c.3451C>T	p.Pro1151Ser	p.P1151S	ENST00000263923	NM_002253.2	1151	Ccc/Tcc																																																																															
APC	324	MSKCC	GRCh37	5	112175546	112175547	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0022783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	97	392	0	ENST00000257430.4:c.4255_4256del	p.Ser1419ProfsTer3	p.S1419Pfs*3	ENST00000257430	NM_000038.5	1419	AGc/c																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748308	41748308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	66	913	0	ENST00000226382.2:c.461G>A	p.Arg154His	p.R154H	ENST00000226382	NM_003924.3	154	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0022790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	264	859	2	ENST00000269305.4:c.809_810dup	p.Glu271LeufsTer75	p.E271Lfs*75	ENST00000269305	NM_001126112.2	270	-/TT																																																																															
APC	324	MSKCC	GRCh37	5	112175349	112175350	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0022790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	225	426	0	ENST00000257430.4:c.4058_4059delAA	p.Glu1353ValfsTer21	p.E1353Vfs*21	ENST00000257430	NM_000038.5	1353	gAA/g																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636723	8636723	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	90	478	0	ENST00000356435.5:c.186G>C	p.Lys62Asn	p.K62N	ENST00000356435		62	aaG/aaC																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0022563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	93	628	1	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101195	27101195	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	121	703	1	ENST00000324856.7:c.4477C>T	p.Gln1493Ter	p.Q1493*	ENST00000324856	NM_006015.4	1493	Cag/Tag																																																																															
ELF3	1999	MSKCC	GRCh37	1	201980299	201980300	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAACTACTTCAGTGCGATGTACAGCT			P-0022563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1185	242	804	0	ENST00000359651.3:c.37_62dup	p.Glu22ThrfsTer30	p.E22Tfs*30	ENST00000359651		12	agc/agCAACTACTTCAGTGCGATGTACAGCTc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16052778	16052778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	102	620	1	ENST00000268712.3:c.896C>T	p.Ala299Val	p.A299V	ENST00000268712	NM_006311.3	299	gCa/gTa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591822	48591822	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	89	530	0	ENST00000342988.3:c.987del	p.Phe329LeufsTer7	p.F329Lfs*7	ENST00000342988	NM_005359.5	329	Ttt/tt																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938526	44938527	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0022563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	144	628	0	ENST00000377967.4:c.3075_3076dup	p.Asn1026IlefsTer23	p.N1026Ifs*23	ENST00000377967	NM_021140.2	1025	agt/agTAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398287	+	missense_variant	Missense_Mutation	ONP	CAG	CAG	AAC			P-0022563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	80	697	0	ENST00000256078.4:c.32_34delinsGTT	p.Ala11_Gly12delinsGlyCys	p.A11_G12delinsGC	ENST00000256078	NM_033360.2	11	gCTGgt/gGTTgt																																																																															
BTK	695	MSKCC	GRCh37	X	100611149	100611149	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	98	725	1	ENST00000308731.7:c.1457T>A	p.Leu486Gln	p.L486Q	ENST00000308731	NM_000061.2	486	cTg/cAg																																																																															
BTK	695	MSKCC	GRCh37	X	100611159	100611159	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	85	713	0	ENST00000308731.7:c.1447C>A	p.Leu483Met	p.L483M	ENST00000308731	NM_000061.2	483	Ctg/Atg																																																																															
PGR	5241	MSKCC	GRCh37	11	100909921	100909921	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	207	753	0	ENST00000325455.5:c.2728T>C	p.Ser910Pro	p.S910P	ENST00000325455	NM_001202474.3	910	Tct/Cct																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945343	151945343	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	64	286	0	ENST00000262189.6:c.2176C>T	p.Gln726Ter	p.Q726*	ENST00000262189	NM_170606.2	726	Cag/Tag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828387	72828387	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	243	619	0	ENST00000268489.5:c.8194T>C	p.Ser2732Pro	p.S2732P	ENST00000268489	NM_006885.3	2732	Tcc/Ccc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578202	7578202	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	467	879	1	ENST00000269305.4:c.647T>A	p.Val216Glu	p.V216E	ENST00000269305	NM_001126112.2	216	gTg/gAg																																																																															
STK11	6794	MSKCC	GRCh37	19	1220590	1220591	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0022572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	638	682	1	ENST00000326873.7:c.609_610dup	p.Phe204CysfsTer84	p.F204Cfs*84	ENST00000326873	NM_000455.4	203	ccg/ccGTg																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52696220	52696220	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	428	866	3	ENST00000394830.3:c.457C>T	p.Gln153Ter	p.Q153*	ENST00000394830	NM_018313.4	153	Cag/Tag																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665219	138665219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	546	948	2	ENST00000330315.3:c.346C>A	p.Pro116Thr	p.P116T	ENST00000330315	NM_023067.3	116	Ccg/Acg																																																																															
TET2	54790	MSKCC	GRCh37	4	106157961	106157961	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	88	349	2	ENST00000380013.4:c.2862G>A	p.Trp954Ter	p.W954*	ENST00000380013	NM_001127208.2	954	tgG/tgA																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910617	29910617	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	146	827	1	ENST00000376809.5:c.157G>T	p.Asp53Tyr	p.D53Y	ENST00000376809	NM_002116.7	53	Gac/Tac																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910685	29910685	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1569	232	1134	0	ENST00000376809.5:c.225G>A	p.Trp75Ter	p.W75*	ENST00000376809	NM_002116.7	75	tgG/tgA																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910689	29910689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1584	248	1145	0	ENST00000376809.5:c.229G>A	p.Glu77Lys	p.E77K	ENST00000376809	NM_002116.7	77	Gag/Aag																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910704	29910704	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1631	251	1180	0	ENST00000376809.5:c.244G>C	p.Glu82Gln	p.E82Q	ENST00000376809	NM_002116.7	82	Gag/Cag																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912346	29912346	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	156	405	0	ENST00000376809.5:c.965T>A	p.Ile322Asn	p.I322N	ENST00000376809	NM_002116.7	322	aTc/aAc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864365	162864365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	135	559	3	ENST00000366898.1:c.148C>A	p.Leu50Met	p.L50M	ENST00000366898	NM_004562.2	50	Ctg/Atg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0022777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	345	600	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0022777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	144	721	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578504	7578540	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTG	AGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTG	-			P-0022611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	310	1248	0	ENST00000269305.4:c.390_426del	p.Asn131CysfsTer27	p.N131Cfs*27	ENST00000269305	NM_001126112.2	130	ctCAACAAGATGTTTTGCCAACTGGCCAAGACCTGCCCT/ct																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368233	45368233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	248	575	0	ENST00000262160.6:c.1369G>A	p.Gly457Arg	p.G457R	ENST00000262160	NM_005901.5	457	Gga/Aga																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67358659	67358659	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	269	810	0	ENST00000327367.4:c.167C>G	p.Thr56Ser	p.T56S	ENST00000327367	NM_005902.3	56	aCc/aGc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021248	31021273	+	frameshift_variant	Frame_Shift_Del	DEL	TCCGAACCAGAGCCAGAAGGAATCTG	TCCGAACCAGAGCCAGAAGGAATCTG	-			P-0022611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	197	650	0	ENST00000375687.4:c.1248_1273del	p.Arg417GlnfsTer12	p.R417Qfs*12	ENST00000375687	NM_015338.5	416	cTCCGAACCAGAGCCAGAAGGAATCTG/c																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864336	117864787	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	CTGCAATTGGTCATATGAAGAGAAAACATAGGTCATACAGTTTTGAACAGTATTATAGAACCATTTATTTTTTAAACTAGTACACTAAGACATACATAATGCTTTCTTTAATGAAGAAGGCCAGATAAAATTTTAGCTCCATAAAGATTTACTCAATTTTTAGCAATATACGTAAAGGGGAAAGGGGATCTTAAAAGGACAAGTCCTACCCTCAGTACAATGTAGGACAATTCTTTAGCAGACTATCTACCCTGCCAGTTCTGAACCTTAAAACTCTGGAAAGACAGGAGGCTTCATACTTAAATAAGGCAATCAGATCCAATGCATTTCCCTGCCCAAACATTTGAGTATATCTTTGATTCCTCATTTCTTTCACTCTGACAGTATAAAGGTAAATTTTAAGCCAAATACTCATGTGAACTTCATCAAGGAACTATTCCAACAGAACAAAC	CTGCAATTGGTCATATGAAGAGAAAACATAGGTCATACAGTTTTGAACAGTATTATAGAACCATTTATTTTTTAAACTAGTACACTAAGACATACATAATGCTTTCTTTAATGAAGAAGGCCAGATAAAATTTTAGCTCCATAAAGATTTACTCAATTTTTAGCAATATACGTAAAGGGGAAAGGGGATCTTAAAAGGACAAGTCCTACCCTCAGTACAATGTAGGACAATTCTTTAGCAGACTATCTACCCTGCCAGTTCTGAACCTTAAAACTCTGGAAAGACAGGAGGCTTCATACTTAAATAAGGCAATCAGATCCAATGCATTTCCCTGCCCAAACATTTGAGTATATCTTTGATTCCTCATTTCTTTCACTCTGACAGTATAAAGGTAAATTTTAAGCCAAATACTCATGTGAACTTCATCAAGGAACTATTCCAACAGAACAAAC	-			P-0022611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	236	434	0	ENST00000297338.2:c.1321+1_1322-1del		p.X441_splice	ENST00000297338	NM_006265.2	441																																																																																
RAD21	5885	MSKCC	GRCh37	8	117864802	117864802	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	292	504	0	ENST00000297338.2:c.1307A>T	p.Gln436Leu	p.Q436L	ENST00000297338	NM_006265.2	436	cAg/cTg																																																																															
RAD21	5885	MSKCC	GRCh37	8	117869711	117870588	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCTAAACAAATTTTAATTTGTCATTAGTTTAGAAAGATTAGAAATAGCACTGTGATAAAAGAAAACTGCTAATGATTTATTCTAATTATGTCACATTTGCTTACTGAAGTCTTACTTCAAATGTTAAAATATCTAGTTTAAACTTTAATTCTTTAGCATCTGAATTTTTTAAAATGACTCAATTACACACAGTTACAACACTGGGGCATGACTAGCAAATTCAAACTTAGATCTAGATTTAAATGATCCTAAAATATGTTTGATAAACTCTAAATATGTATGTATGTTAAGTTACATTAACAGTCACAGCTGAAACTTTCCCGTTATAATGTGTTTCATCAAGAAAAGAATCTGGTTCTGGGCACAGTGGCATGTGCCTGTAGTCCCAGCTACTTGAGGCTGAAGTGGGAGGATCACTTGAATCCAAGAGTTCGAGGCTGTAGTGTGCTATAATCCAGCCTGTGAAGAGCCACGGCACTCCAGCATGGATAACACAGCAGAGACCCCGCCTCTTAAAAAACAATATGCCTTGCTAACTAGTTTTGAATACCTGTTTTTGAATAGCAAGTATAACAGGGAAACTAACTGTTCCAAAATGGTTGGTTTAAACGTGATCACCACTTCAATGTTGGGACTCCTCGCAGAAATCAATATATAGGTTCTATGATTGCATATAGGGAGAGAAGTAGGTAAACAATTAGCTCCAAGTATGAAAATAATGCTTAATCTACTGGTAGAAAGCCAAATTCTTTTCTTGATGAAAATGCATTACATGAAATTTTAAGTCTTTCTGTCTATAGTCTGGTTTTCTTTTGAAATTGCTATTAGCAACACAATATAACATTATAATTAATGGCTAATAATTTGTTTCTCTTTT	ACCTAAACAAATTTTAATTTGTCATTAGTTTAGAAAGATTAGAAATAGCACTGTGATAAAAGAAAACTGCTAATGATTTATTCTAATTATGTCACATTTGCTTACTGAAGTCTTACTTCAAATGTTAAAATATCTAGTTTAAACTTTAATTCTTTAGCATCTGAATTTTTTAAAATGACTCAATTACACACAGTTACAACACTGGGGCATGACTAGCAAATTCAAACTTAGATCTAGATTTAAATGATCCTAAAATATGTTTGATAAACTCTAAATATGTATGTATGTTAAGTTACATTAACAGTCACAGCTGAAACTTTCCCGTTATAATGTGTTTCATCAAGAAAAGAATCTGGTTCTGGGCACAGTGGCATGTGCCTGTAGTCCCAGCTACTTGAGGCTGAAGTGGGAGGATCACTTGAATCCAAGAGTTCGAGGCTGTAGTGTGCTATAATCCAGCCTGTGAAGAGCCACGGCACTCCAGCATGGATAACACAGCAGAGACCCCGCCTCTTAAAAAACAATATGCCTTGCTAACTAGTTTTGAATACCTGTTTTTGAATAGCAAGTATAACAGGGAAACTAACTGTTCCAAAATGGTTGGTTTAAACGTGATCACCACTTCAATGTTGGGACTCCTCGCAGAAATCAATATATAGGTTCTATGATTGCATATAGGGAGAGAAGTAGGTAAACAATTAGCTCCAAGTATGAAAATAATGCTTAATCTACTGGTAGAAAGCCAAATTCTTTTCTTGATGAAAATGCATTACATGAAATTTTAAGTCTTTCTGTCTATAGTCTGGTTTTCTTTTGAAATTGCTATTAGCAACACAATATAACATTATAATTAATGGCTAATAATTTGTTTCTCTTTT	-			P-0022611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	224	405	0	ENST00000297338.2:c.481+3_483del		p.X161_splice	ENST00000297338	NM_006265.2	161																																																																																
RAD21	5885	MSKCC	GRCh37	8	117874178	117875200	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCTAGAAAAGAAATGCTAAGCTTAAATATCTAGCTACCCATAAATTATCTAGGGATCAGAGGGAGATAAGTAGGTATAACTTCCTAAGTTTATATTCTCATAGAAAGGTTGATAACATATGCAAAATACCTTGAAGCACAAGTACTTCTCTTTTTCCATGCTCATAAATTGTATTCCTTGCTTTAGGAAAAAGTCAAAGCACTAATTATGCATTAAGCTCATAAATGTTTAAACGGACATATCAACAAATAACTAGTAATAGTTTCCTAATTAAACATGATATTTATGAGGGGGAAAAAGAATAACTGCAGAAGAGTACCTTAAATGTTAAAAGGAGCTGGTTATTTTGGAGAAAGAATTACACAATTTTAATTTTCTTTATCTTTTTCCTATATTTTTCAAGTTGTCTATAATAAATATGCCTTACTTTGAAAGACAAAAAAAAGCATGTTATTTAGATAAAATGTGCTTATTGGTCACATGTTAATTTAAGTATTGTAGTCTTTTTCTAAATATTTTACTTTTAAATAAAATCTTAGATCTCAGACATTTTACTGTTCACATACTGACATAAACTGAAGTACTAGAATGTATCCTCAGTAGAAACTGTTTAAGGCATTTCTTAATAAAATACACATTATTTTAATTAGAATAAAAATTTCATCAATGCTTTTAAAAATTATAGAAAGATATGTGAATTTAAATATTAATTATCTTCTTAGATGGTGGTGTGGTTGGCAGACTCCAGTTTTATAACCAATCATTACCTAAAACAAAATAACAAAAAACTACGAAGAATATTTACTTAGGAAAAAAAGTTTAAAATCCTAAAATTGTCTTTTCTGAGCTATATTTTAAAAAATCATCACATAACAATTAGTTTCCAACATTTTAACCTCTTGATGACTCAAGTCTATGTAAGCTGCTGAAAAAAGTATTAAAAAGGCAGCTCCAAAGGAAGAACAAATGGGGGTGAGCTCCATTACTTCACAGGGAGAACAGACGCAAGTAGGTTTCCTCCC	ACCTAGAAAAGAAATGCTAAGCTTAAATATCTAGCTACCCATAAATTATCTAGGGATCAGAGGGAGATAAGTAGGTATAACTTCCTAAGTTTATATTCTCATAGAAAGGTTGATAACATATGCAAAATACCTTGAAGCACAAGTACTTCTCTTTTTCCATGCTCATAAATTGTATTCCTTGCTTTAGGAAAAAGTCAAAGCACTAATTATGCATTAAGCTCATAAATGTTTAAACGGACATATCAACAAATAACTAGTAATAGTTTCCTAATTAAACATGATATTTATGAGGGGGAAAAAGAATAACTGCAGAAGAGTACCTTAAATGTTAAAAGGAGCTGGTTATTTTGGAGAAAGAATTACACAATTTTAATTTTCTTTATCTTTTTCCTATATTTTTCAAGTTGTCTATAATAAATATGCCTTACTTTGAAAGACAAAAAAAAGCATGTTATTTAGATAAAATGTGCTTATTGGTCACATGTTAATTTAAGTATTGTAGTCTTTTTCTAAATATTTTACTTTTAAATAAAATCTTAGATCTCAGACATTTTACTGTTCACATACTGACATAAACTGAAGTACTAGAATGTATCCTCAGTAGAAACTGTTTAAGGCATTTCTTAATAAAATACACATTATTTTAATTAGAATAAAAATTTCATCAATGCTTTTAAAAATTATAGAAAGATATGTGAATTTAAATATTAATTATCTTCTTAGATGGTGGTGTGGTTGGCAGACTCCAGTTTTATAACCAATCATTACCTAAAACAAAATAACAAAAAACTACGAAGAATATTTACTTAGGAAAAAAAGTTTAAAATCCTAAAATTGTCTTTTCTGAGCTATATTTTAAAAAATCATCACATAACAATTAGTTTCCAACATTTTAACCTCTTGATGACTCAAGTCTATGTAAGCTGCTGAAAAAAGTATTAAAAAGGCAGCTCCAAAGGAAGAACAAATGGGGGTGAGCTCCATTACTTCACAGGGAGAACAGACGCAAGTAGGTTTCCTCCC	-			P-0022611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	125	443	0	ENST00000297338.2:c.274+170_277del		p.X92_splice	ENST00000297338	NM_006265.2	92																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	156	914	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0022786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	103	961	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
MYCL1	4610	MSKCC	GRCh37	1	40366802	40366802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	66	643	0	ENST00000397332.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000397332	NM_001033082.2	132	cGg/cTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971011	21971012	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0022786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	66	665	0	ENST00000304494.5:c.344_346dup	p.Val115dup	p.V115dup	ENST00000304494	NM_000077.4	115	gac/gTGGac																																																																															
APC	324	MSKCC	GRCh37	5	112175600	112175600	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	118	377	0	ENST00000257430.4:c.4312delA	p.Thr1438HisfsTer35	p.T1438Hfs*35	ENST00000257430	NM_000038.5	1437	Aaa/aa																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0022567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	66	529	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577563	7577565	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0022567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	224	756	1	ENST00000269305.4:c.716_718del	p.Asn239del	p.N239del	ENST00000269305	NM_001126112.2	239	aACAgt/agt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965476	68965476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1381	118	733	2	ENST00000288368.4:c.1088G>A	p.Arg363Gln	p.R363Q	ENST00000288368	NM_024870.2	363	cGg/cAg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118379891	118379891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	53	390	1	ENST00000534358.1:c.10876C>T	p.Pro3626Ser	p.P3626S	ENST00000534358	NM_005933.3	3626	Cca/Tca																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18656235	18656235	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	93	565	0	ENST00000266497.5:c.2914G>C	p.Asp972His	p.D972H	ENST00000266497		972	Gat/Cat																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419965	41419965	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	444	645	0	ENST00000373198.4:c.356C>G	p.Ala119Gly	p.A119G	ENST00000373198	NM_133170.3	119	gCc/gGc																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23539034	23539034	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	97	614	1	ENST00000380871.4:c.405G>T	p.Gln135His	p.Q135H	ENST00000380871	NM_006167.3	135	caG/caT																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870974	12870975	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	37	441	0	ENST00000228872.4:c.204dup	p.Pro69ThrfsTer56	p.P69Tfs*56	ENST00000228872	NM_004064.3	67	-/A																																																																															
CDH1	999	MSKCC	GRCh37	16	68772208	68772226	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGCTCTGCCAGGAGCCG	TTGGCTCTGCCAGGAGCCG	CAGAGCCAA			P-0022603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	75	1017	0	ENST00000261769.5:c.57_75delinsCAGAGCCAA	p.Trp20ArgfsTer33	p.W20Rfs*33	ENST00000261769	NM_004360.3	19	tcTTGGCTCTGCCAGGAGCCG/tcCAGAGCCAA																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041720	47041720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	74	656	0	ENST00000329236.7:c.1711C>T	p.Gln571Ter	p.Q571*	ENST00000329236	NM_001204466.1	571	Caa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0022604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	452	699	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0022604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	375	602	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717695	89717696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	59	623	0	ENST00000371953.3:c.723dupT	p.Glu242Ter	p.E242*	ENST00000371953	NM_000314.4	240	-/T																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2494677	2494677	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	76	943	0	ENST00000355716.4:c.817A>G	p.Ile273Val	p.I273V	ENST00000355716	NM_003820.2	273	Ata/Gta																																																																															
PMAIP1	5366	MSKCC	GRCh37	18	57569913	57569914	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0022604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	49	371	0	ENST00000316660.6:c.95_96dup	p.Gly33LeufsTer5	p.G33Lfs*5	ENST00000316660	NM_021127.2	31	-/TT																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212483999	212483999	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0022604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	76	471	0	ENST00000342788.4:c.2204G>T	p.Gly735Val	p.G735V	ENST00000342788	NM_005235.2	735	gGt/gTt																																																																															
MED12	9968	MSKCC	GRCh37	X	70357096	70357096	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	112	995	0	ENST00000374080.3:c.5611C>T	p.Arg1871Ter	p.R1871*	ENST00000374080		1871	Cga/Tga																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572289	64572289	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0010652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	710	651	1	ENST00000337652.1:c.1366-1G>A		p.X456_splice	ENST00000337652	NM_130803.2	456																																																																																
JAK3	3718	MSKCC	GRCh37	19	17945515	17945515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	330	325	0	ENST00000458235.1:c.2215G>A	p.Glu739Lys	p.E739K	ENST00000458235	NM_000215.3	739	Gag/Aag																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287842	33287843	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	AT			P-0010652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	697	767	2	ENST00000374542.5:c.1410_1411delinsAT	p.Met470_Gln471delinsIleTer	p.M470_Q471delinsI*	ENST00000374542	NM_001141970.1	470	atGCag/atATag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	310	814	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974765	21974765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	140	373	0	ENST00000304494.5:c.62C>A	p.Ala21Asp	p.A21D	ENST00000304494	NM_000077.4	21	gCc/gAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	345	896	0	ENST00000269305.4:c.584T>G	p.Ile195Ser	p.I195S	ENST00000269305	NM_001126112.2	195	aTc/aGc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148524346	148524346	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	152	544	0	ENST00000320356.2:c.638G>T	p.Arg213Leu	p.R213L	ENST00000320356	NM_004456.4	213	cGc/cTc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419884	152419884	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	119	726	0	ENST00000206249.3:c.1571A>T	p.His524Leu	p.H524L	ENST00000206249	NM_000125.3	524	cAt/cTt																																																																															
LYN	4067	MSKCC	GRCh37	8	56860187	56860187	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	135	717	0	ENST00000519728.1:c.189A>C	p.Glu63Asp	p.E63D	ENST00000519728	NM_002350.3	63	gaA/gaC																																																																															
STK11	6794	MSKCC	GRCh37	19	1220370	1220370	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	118	744	2	ENST00000326873.7:c.465-2A>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
MDC1	9656	MSKCC	GRCh37	6	30675664	30675664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	295	1081	0	ENST00000376406.3:c.2692G>A	p.Glu898Lys	p.E898K	ENST00000376406	NM_014641.2	898	Gag/Aag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37884145	37884145	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	85	953	1	ENST00000269571.5:c.3616C>G	p.Gln1206Glu	p.Q1206E	ENST00000269571		1206	Cag/Gag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109720	115109720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	120	1073	0	ENST00000257566.3:c.2158G>A	p.Glu720Lys	p.E720K	ENST00000257566	NM_016569.3	720	Gaa/Aaa																																																																															
DICER1	23405	MSKCC	GRCh37	14	95579470	95579470	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	48	566	0	ENST00000343455.3:c.1999C>G	p.Leu667Val	p.L667V	ENST00000343455	NM_177438.2	667	Ctt/Gtt																																																																															
MGA	23269	MSKCC	GRCh37	15	42028418	42028418	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	21	433	0	ENST00000219905.7:c.3956C>G	p.Ser1319Cys	p.S1319C	ENST00000219905	NM_001164273.1	1319	tCt/tGt																																																																															
NF1	4763	MSKCC	GRCh37	17	29552239	29552239	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	30	655	0	ENST00000358273.4:c.1972C>G	p.Leu658Val	p.L658V	ENST00000358273	NM_001042492.2	658	Ctc/Gtc																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216988	2216988	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	175	1033	1	ENST00000398665.3:c.2443C>T	p.Gln815Ter	p.Q815*	ENST00000398665	NM_032482.2	815	Cag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597328	10597329	+	frameshift_variant,stop_lost	Frame_Shift_Ins	INS	-	-	C			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	120	926	0	ENST00000171111.5:c.1874dup	p.Ter625TrpfsTer26	p.*625Wfs*26	ENST00000171111	NM_203500.1	625	tga/tgGa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141551	11141551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	107	820	0	ENST00000344626.4:c.3528C>A	p.Ser1176Arg	p.S1176R	ENST00000344626	NM_003072.3	1176	agC/agA																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25978922	25978922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	58	552	1	ENST00000435504.4:c.1001C>T	p.Ser334Leu	p.S334L	ENST00000435504		334	tCa/tTa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027263	48027263	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	33	511	0	ENST00000234420.5:c.2141C>G	p.Ser714Cys	p.S714C	ENST00000234420	NM_000179.2	714	tCt/tGt																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1941447	1941447	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	39	795	0	ENST00000382891.5:c.1823C>G	p.Ser608Cys	p.S608C	ENST00000382891	NM_133335.3	608	tCt/tGt																																																																															
PREX2	80243	MSKCC	GRCh37	8	68965375	68965375	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	43	810	0	ENST00000288368.4:c.987G>C	p.Lys329Asn	p.K329N	ENST00000288368	NM_024870.2	329	aaG/aaC																																																																															
ATRX	546	MSKCC	GRCh37	X	76938505	76938505	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	26	579	0	ENST00000373344.5:c.2243C>G	p.Ser748Cys	p.S748C	ENST00000373344	NM_000489.3	748	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578471	7578480	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCGGGGGT	GGGCGGGGGT	-			P-0022579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	149	372	0	ENST00000269305.4:c.450_459del	p.Pro151AlafsTer16	p.P151Afs*16	ENST00000269305	NM_001126112.2	150	acACCCCCGCCC/ac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259517	+	missense_variant	Missense_Mutation	ONP	TGG	TGG	GCT			P-0022579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	231	362	0	ENST00000275493.2:c.2573_2575delinsGCT	p.Leu858_Ala859delinsArgSer	p.L858_A859delinsRS	ENST00000275493	NM_005228.3	858	cTGGcc/cGCTcc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711876	89711876	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0022481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	94	524	0	ENST00000371953.3:c.494G>A	p.Gly165Glu	p.G165E	ENST00000371953	NM_000314.4	165	gGa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0022476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	35	598	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0022476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	17	278	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0022491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	184	501	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553588	106553588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	44	336	1	ENST00000369096.4:c.1553C>T	p.Thr518Met	p.T518M	ENST00000369096	NM_001198.3	518	aCg/aTg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379883	17379883	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1229	117	970	0	ENST00000359435.4:c.268A>C	p.Asn90His	p.N90H	ENST00000359435	NM_001033549.1	90	Aac/Cac																																																																															
ATM	472	MSKCC	GRCh37	11	108206594	108206594	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	118	473	0	ENST00000278616.4:c.8174A>T	p.Asp2725Val	p.D2725V	ENST00000278616	NM_000051.3	2725	gAt/gTt																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20159754	20159754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	155	459	0	ENST00000379607.5:c.5C>T	p.Pro2Leu	p.P2L	ENST00000379607	NM_001412.3	2	cCc/cTc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211666	36211666	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	142	567	1	ENST00000222270.7:c.1417C>G	p.Pro473Ala	p.P473A	ENST00000222270	NM_014727.1	473	Ccc/Gcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0022438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	78	797	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	37	771	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0022438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	28	559	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
MED12	9968	MSKCC	GRCh37	X	70354226	70354226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	97	820	4	ENST00000374080.3:c.4637C>T	p.Thr1546Met	p.T1546M	ENST00000374080		1546	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112155043	112155043	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0022438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	62	482	0	ENST00000257430.4:c.1312+2T>C		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27107004	27107005	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0022438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	46	671	0	ENST00000324856.7:c.6619_6620del	p.Gln2207ValfsTer17	p.Q2207Vfs*17	ENST00000324856	NM_006015.4	2205	gcCAca/gcca																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920405	114920405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	64	707	1	ENST00000543371.1:c.1346C>T	p.Ala449Val	p.A449V	ENST00000543371	NM_001198531.1	449	gCa/gTa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3832683	3832683	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0022438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	38	470	0	ENST00000262367.5:c.1573+2T>C		p.X525_splice	ENST00000262367	NM_004380.2	525																																																																																
RAF1	5894	MSKCC	GRCh37	3	12645695	12645699	+	protein_altering_variant	In_Frame_Del	DEL	TGTCG	TGTCG	GA			P-0022527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	61	337	0	ENST00000251849.4:c.770_774delinsTC	p.Ser257_Thr258delinsPhe	p.S257_T258delinsF	ENST00000251849	NM_002880.3	257	tCGACA/tTC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	15	721	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30732976	30732976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	23	456	0	ENST00000359013.4:c.1664C>T	p.Thr555Ile	p.T555I	ENST00000359013	NM_001024847.2	555	aCa/aTa																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252994	36252995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	170	580	0	ENST00000300305.3:c.367dupG	p.Asp123GlyfsTer15	p.D123Gfs*15	ENST00000300305		123	gat/gGat																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	193	749	3	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	256	909	0	ENST00000267101.3:c.850G>C	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Cga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577148	7577148	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1060501194		P-0022530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	80	747	2	ENST00000269305.4:c.790del	p.Leu264TyrfsTer81	p.L264Yfs*81	ENST00000269305	NM_001126112.2	264	Cta/ta																																																																															
KDR	3791	MSKCC	GRCh37	4	55948172	55948172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	41	833	0	ENST00000263923.4:c.3799G>A	p.Glu1267Lys	p.E1267K	ENST00000263923	NM_002253.2	1267	Gaa/Aaa																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38135877	38135877	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	50	795	0	ENST00000317025.8:c.3814G>C	p.Glu1272Gln	p.E1272Q	ENST00000317025	NM_023034.1	1272	Gag/Cag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44950030	44950031	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	63	859	0	ENST00000377967.4:c.3800dup	p.Val1268SerfsTer23	p.V1268Sfs*23	ENST00000377967	NM_021140.2	1267	ata/aTta																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591246	67591246	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0022578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	52	527	1	ENST00000274335.5:c.1746-2A>T		p.X582_splice	ENST00000274335		582																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134968251	134968251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	306	767	2	ENST00000398015.3:c.2764G>A	p.Ala922Thr	p.A922T	ENST00000398015	NM_004441.4	922	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578441	7578441	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0022430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	468	850	0	ENST00000269305.4:c.489C>G	p.Tyr163Ter	p.Y163*	ENST00000269305	NM_001126112.2	163	taC/taG																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427543	49427543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	329	590	0	ENST00000301067.7:c.10945G>A	p.Gly3649Ser	p.G3649S	ENST00000301067	NM_003482.3	3649	Ggt/Agt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30068253	30068253	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	307	687	0	ENST00000331968.5:c.2146T>G	p.Ser716Ala	p.S716A	ENST00000331968	NM_002742.2	716	Tca/Gca																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832556	72832556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	253	545	0	ENST00000268489.5:c.4025G>T	p.Gly1342Val	p.G1342V	ENST00000268489	NM_006885.3	1342	gGa/gTa																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52723103	52723106	+	frameshift_variant	Frame_Shift_Del	DEL	CTGG	CTGG	-			P-0022430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	136	548	1	ENST00000322088.6:c.1292_1295del	p.Ala431AspfsTer35	p.A431Dfs*35	ENST00000322088	NM_014225.5	430	CTGGct/ct																																																																															
KDR	3791	MSKCC	GRCh37	4	55976929	55976929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	209	485	0	ENST00000263923.4:c.983C>A	p.Pro328His	p.P328H	ENST00000263923	NM_002253.2	328	cCt/cAt																																																																															
IRF4	3662	MSKCC	GRCh37	6	394945	394945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	293	674	0	ENST00000380956.4:c.341G>A	p.Ser114Asn	p.S114N	ENST00000380956	NM_001195286.1	114	aGc/aAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	303	787	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200072	138200072	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	170	580	0	ENST00000237289.4:c.1490G>T	p.Arg497Leu	p.R497L	ENST00000237289	NM_001270507.1	497	cGt/cTt																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793016	33793016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	26	151	0	ENST00000498907.2:c.305G>A	p.Gly102Asp	p.G102D	ENST00000498907	NM_004364.3	102	gGc/gAc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8636763	8636763	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	168	708	0	ENST00000356435.5:c.146del	p.Gly49GlufsTer23	p.G49Efs*23	ENST00000356435		49	gGa/ga																																																																															
ATRX	546	MSKCC	GRCh37	X	76939111	76939111	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	108	708	2	ENST00000373344.5:c.1637G>T	p.Gly546Val	p.G546V	ENST00000373344	NM_000489.3	546	gGg/gTg																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115280121	115280121	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	179	764	1	ENST00000438362.2:c.511A>T	p.Thr171Ser	p.T171S	ENST00000438362	NM_001242891.1	171	Aca/Tca																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115284194	115284194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	191	716	0	ENST00000438362.2:c.92C>T	p.Ser31Leu	p.S31L	ENST00000438362	NM_001242891.1	31	tCa/tTa																																																																															
RET	5979	MSKCC	GRCh37	10	43615108	43615108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	245	987	0	ENST00000355710.3:c.2522C>A	p.Pro841Gln	p.P841Q	ENST00000355710	NM_020975.4	841	cCg/cAg																																																																															
ATM	472	MSKCC	GRCh37	11	108121427	108121427	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	90	308	0	ENST00000278616.4:c.1236-1G>T		p.X412_splice	ENST00000278616	NM_000051.3	412																																																																																
ATM	472	MSKCC	GRCh37	11	108199908	108199908	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	45	398	0	ENST00000278616.4:c.7250T>C	p.Leu2417Pro	p.L2417P	ENST00000278616	NM_000051.3	2417	cTg/cCg																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133725	41133725	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	61	540	0	ENST00000379561.5:c.1903G>T	p.Val635Leu	p.V635L	ENST00000379561	NM_002015.3	635	Gtg/Ttg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2226351	2226351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	279	904	1	ENST00000326181.6:c.1964G>T	p.Arg655Leu	p.R655L	ENST00000326181	NM_032271.2	655	cGa/cTa																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868190	45868190	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	116	915	1	ENST00000391945.4:c.500A>T	p.Glu167Val	p.E167V	ENST00000391945	NM_000400.3	167	gAg/gTg																																																																															
ALK	238	MSKCC	GRCh37	2	29474002	29474002	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	218	908	0	ENST00000389048.3:c.2173A>G	p.Ile725Val	p.I725V	ENST00000389048	NM_004304.4	725	Atc/Gtc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189855	66189855	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	104	716	0	ENST00000273854.3:c.3091G>T	p.Val1031Leu	p.V1031L	ENST00000273854	NM_004439.5	1031	Gta/Tta																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538934	187538934	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	89	647	0	ENST00000441802.2:c.8806del	p.Val2936Ter	p.V2936*	ENST00000441802	NM_005245.3	2936	Gtg/tg																																																																															
HGF	3082	MSKCC	GRCh37	7	81358944	81358944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	327	688	1	ENST00000222390.5:c.1017G>A	p.Met339Ile	p.M339I	ENST00000222390	NM_000601.4	339	atG/atA																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507426	8507426	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	40	382	0	ENST00000356435.5:c.1552C>A	p.Gln518Lys	p.Q518K	ENST00000356435		518	Cag/Aag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8528622	8528622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	73	615	0	ENST00000356435.5:c.510C>A	p.Asn170Lys	p.N170K	ENST00000356435		170	aaC/aaA																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53231037	53231037	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	103	701	0	ENST00000375401.3:c.1865G>T	p.Trp622Leu	p.W622L	ENST00000375401	NM_004187.3	622	tGg/tTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412376	63412376	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	119	929	1	ENST00000330258.3:c.791C>A	p.Ala264Asp	p.A264D	ENST00000330258	NM_152424.3	264	gCc/gAc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971156	21971156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	183	648	1	ENST00000304494.5:c.202G>A	p.Ala68Thr	p.A68T	ENST00000304494	NM_000077.4	68	Gcg/Acg																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206652339	206652339	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1677	293	1049	1	ENST00000367120.3:c.1046A>T	p.His349Leu	p.H349L	ENST00000367120	NM_014002.3	349	cAc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7572929	7572929	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0022524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	167	755	0	ENST00000269305.4:c.1180T>C	p.Ter394ArgextTer9	p.*394Rext*9	ENST00000269305	NM_001126112.2	394	Tga/Cga																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467370	66467370	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	69	259	0	ENST00000273854.3:c.899G>C	p.Gly300Ala	p.G300A	ENST00000273854	NM_004439.5	300	gGc/gCc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151933019	151933019	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0022524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	38	183	0	ENST00000262189.6:c.2653-1G>A		p.X885_splice	ENST00000262189	NM_170606.2	885																																																																																
CD274	29126	MSKCC	GRCh37	9	5457127	5457127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	161	513	0	ENST00000381577.3:c.101G>A	p.Ser34Asn	p.S34N	ENST00000381577	NM_014143.3	34	aGc/aAc																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31379479	31379479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145632647		P-0022586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	662	627	1	ENST00000328111.2:c.886G>A	p.Val296Ile	p.V296I	ENST00000328111	NM_006892.3	296	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0022586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	65	498	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0022586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	47	333	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0022586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	180	687	0	ENST00000269305.4:c.560-2A>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114912161	114912162	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	196	716	0	ENST00000543371.1:c.1232dup	p.Met411IlefsTer12	p.M411Ifs*12	ENST00000543371	NM_001198531.1	411	atg/aTtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577546	7577547	+	missense_variant	Missense_Mutation	DNP	GC	GC	TG			P-0022557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	397	859	3	ENST00000269305.4:c.734_735delinsCA	p.Gly245Ala	p.G245A	ENST00000269305	NM_001126112.2	245	gGC/gCA																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38277070	38277070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	1544	796	0	ENST00000425967.3:c.1358C>T	p.Pro453Leu	p.P453L	ENST00000425967	NM_001174067.1	453	cCt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0022490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	187	734	3	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																															
AKT3	10000	MSKCC	GRCh37	1	243777010	243777010	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200428825		P-0022490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	48	595	1	ENST00000263826.5:c.659G>A	p.Arg220His	p.R220H	ENST00000263826	NM_005465.4	220	cGt/cAt																																																																															
MYD88	4615	MSKCC	GRCh37	3	38180252	38180252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	110	578	0	ENST00000396334.3:c.100C>T	p.Pro34Ser	p.P34S	ENST00000396334	NM_002468.4	34	Ccc/Tcc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710518	114710518	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0022490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	67	271	0	ENST00000543371.1:c.3G>A	p.Met1?	p.M1?	ENST00000543371	NM_001198531.1	1	atG/atA																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346811	89346811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	10	264	0	ENST00000301030.4:c.6139G>A	p.Ala2047Thr	p.A2047T	ENST00000301030	NM_001256183.1	2047	Gcc/Acc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719828	190719828	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	27	264	0	ENST00000441310.2:c.1830G>T	p.Lys610Asn	p.K610N	ENST00000441310	NM_000534.4	610	aaG/aaT																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	101	595	0	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																															
MSI1	4440	MSKCC	GRCh37	12	120795696	120795696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	34	422	0	ENST00000257552.2:c.457G>A	p.Gly153Arg	p.G153R	ENST00000257552	NM_002442.3	153	Ggg/Agg																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66525130	66525130	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0022468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	127	267	0	ENST00000358598.2:c.889G>C	p.Glu297Gln	p.E297Q	ENST00000358598	NM_212471.2	297	Gag/Cag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288753	15288753	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	35	148	0	ENST00000263388.2:c.3986G>T	p.Gly1329Val	p.G1329V	ENST00000263388	NM_000435.2	1329	gGg/gTg																																																																															
NBN	4683	MSKCC	GRCh37	8	90965821	90965821	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	34	322	0	ENST00000265433.3:c.1496C>A	p.Ser499Ter	p.S499*	ENST00000265433	NM_002485.4	499	tCa/tAa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711974	89711974	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	35	564	0	ENST00000371953.3:c.592del	p.Met198Ter	p.M198*	ENST00000371953	NM_000314.4	198	Atg/tg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47059127	47059127	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0022559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	55	662	1	ENST00000409792.3:c.7533+1G>A		p.X2511_splice	ENST00000409792	NM_014159.6	2511																																																																																
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912664		P-0022439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	110	736	0	ENST00000269305.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000269305	NM_001126112.2	337	cGc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42003319	42003319	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	182	668	0	ENST00000219905.7:c.2856del	p.Asn952LysfsTer42	p.N952Kfs*42	ENST00000219905	NM_001164273.1	952	aaT/aa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748396	43748396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	220	844	2	ENST00000382044.4:c.2410G>A	p.Glu804Lys	p.E804K	ENST00000382044	NM_001141980.1	804	Gag/Aag																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40458452	40458452	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	212	905	0	ENST00000345506.4:c.1667C>G	p.Ser556Cys	p.S556C	ENST00000345506	NM_003152.3	556	tCc/tGc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25466782	25466782	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	170	687	0	ENST00000264709.3:c.1921G>C	p.Asp641His	p.D641H	ENST00000264709	NM_175629.2	641	Gat/Cat																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972753	25972753	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	135	503	0	ENST00000435504.4:c.1672C>G	p.Leu558Val	p.L558V	ENST00000435504		558	Ctt/Gtt																																																																															
ALK	238	MSKCC	GRCh37	2	29443695	29443695	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs863225281		P-0022398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	197	619	0	ENST00000389048.3:c.3522C>G	p.Phe1174Leu	p.F1174L	ENST00000389048	NM_004304.4	1174	ttC/ttG																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29121018	29121018	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137853009		P-0022398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	236	823	2	ENST00000328354.6:c.539G>A	p.Arg180His	p.R180H	ENST00000328354	NM_007194.3	180	cGc/cAc																																																																															
TET2	54790	MSKCC	GRCh37	4	106197612	106197612	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	114	439	0	ENST00000380013.4:c.5945C>G	p.Ser1982Cys	p.S1982C	ENST00000380013	NM_001127208.2	1982	tCc/tGc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32185011	32185011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	197	857	0	ENST00000375023.3:c.1657G>A	p.Asp553Asn	p.D553N	ENST00000375023	NM_004557.3	553	Gat/Aat																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20148645	20148645	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	183	527	0	ENST00000379607.5:c.418G>C	p.Asp140His	p.D140H	ENST00000379607	NM_001412.3	140	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	311	629	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0022537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	100	319	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41239938	41239938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	59	52	0	ENST00000379561.5:c.412C>T	p.Pro138Ser	p.P138S	ENST00000379561	NM_002015.3	138	Ccc/Tcc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2111887	2111887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	187	610	1	ENST00000219476.3:c.1135G>A	p.Glu379Lys	p.E379K	ENST00000219476	NM_000548.3	379	Gag/Aag																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	45	548	0				ENST00000310581	NM_198253.2																																																																																	
CBL	867	MSKCC	GRCh37	11	119148919	119148919	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	21	452	1	ENST00000264033.4:c.1139T>C	p.Leu380Pro	p.L380P	ENST00000264033	NM_005188.3	380	cTa/cCa																																																																															
POLE	5426	MSKCC	GRCh37	12	133226084	133226084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	72	784	0	ENST00000320574.5:c.3813G>T	p.Trp1271Cys	p.W1271C	ENST00000320574	NM_006231.2	1271	tgG/tgT																																																																															
FOXL2	668	MSKCC	GRCh37	3	138665522	138665522	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	69	672	0	ENST00000330315.3:c.43C>A	p.Leu15Met	p.L15M	ENST00000330315	NM_023067.3	15	Ctg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	39	610	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175175	112175175	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	45	232	0	ENST00000257430.4:c.3885del	p.Ala1296GlnfsTer9	p.A1296Qfs*9	ENST00000257430	NM_000038.5	1295	gAa/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0022539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	111	607	1	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111497	8111497	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	138	700	1	ENST00000346208.3:c.983G>T	p.Trp328Leu	p.W328L	ENST00000346208		328	tGg/tTg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115827	8115828	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	115	810	0	ENST00000346208.3:c.1175dup	p.Asn392LysfsTer115	p.N392Kfs*115	ENST00000346208		391	-/A																																																																															
RHOA	387	MSKCC	GRCh37	3	49412958	49412958	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006424-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			735	149	813	0	ENST00000418115.1:c.65T>G	p.Leu22Arg	p.L22R	ENST00000418115	NM_001664.2	22	cTc/cGc																																																																															
CBFB	865	MSKCC	GRCh37	16	67100584	67100584	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006424-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			365	112	564	0	ENST00000412916.2:c.283-1G>A		p.X95_splice	ENST00000412916		95																																																																																
CDH1	999	MSKCC	GRCh37	16	68862203	68862204	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006424-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	113	578	0	ENST00000261769.5:c.2293dupC	p.Gln765ProfsTer4	p.Q765Pfs*4	ENST00000261769	NM_004360.3	764	gac/gaCc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273093	18273093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006424-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			715	150	756	1	ENST00000222254.8:c.983C>T	p.Ala328Val	p.A328V	ENST00000222254	NM_005027.3	328	gCt/gTt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198262794	198262794	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006424-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			602	36	596	0	ENST00000335508.6:c.3181G>C	p.Glu1061Gln	p.E1061Q	ENST00000335508	NM_012433.2	1061	Gag/Cag																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0022284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	237	795	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0022284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	309	742	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0022284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	293	841	1	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	88	325	0	ENST00000281708.4:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000281708	NM_033632.3	545	tAt/tGt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106467	27106467	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	228	600	0	ENST00000324856.7:c.6079del	p.Ala2027HisfsTer3	p.A2027Hfs*3	ENST00000324856	NM_006015.4	2026	caG/ca																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89457283	89457283	+	splice_donor_variant	Splice_Site	DEL	T	T	-			P-0022284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	85	458	0	ENST00000336596.2:c.1762+2del		p.X588_splice	ENST00000336596	NM_005233.5	588																																																																																
APC	324	MSKCC	GRCh37	5	112155044	112155044	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	T			P-0022284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	185	437	0	ENST00000257430.4:c.1312+3A>T		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																																
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0022383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	161	598	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
RECQL	5965	MSKCC	GRCh37	12	21624467	21624467	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	295	946	3	ENST00000421138.2:c.1562G>C	p.Gly521Ala	p.G521A	ENST00000421138		521	gGa/gCa																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618691	37618697	+	frameshift_variant	Frame_Shift_Del	DEL	CTAAAAG	CTAAAAG	-			P-0022383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	169	721	0	ENST00000447079.4:c.372_378del	p.Lys124AsnfsTer18	p.K124Nfs*18	ENST00000447079	NM_015083.1	123	CTAAAAGct/ct																																																																															
KIT	3815	MSKCC	GRCh37	4	55594078	55594078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	191	540	0	ENST00000288135.5:c.1864G>A	p.Val622Ile	p.V622I	ENST00000288135	NM_000222.2	622	Gta/Ata																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157469874	157469874	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	167	806	1	ENST00000346085.5:c.2668C>A	p.Pro890Thr	p.P890T	ENST00000346085	NM_020732.3	890	Cca/Aca																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226024	53226024	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	55	527	0	ENST00000375401.3:c.2825C>G	p.Ala942Gly	p.A942G	ENST00000375401	NM_004187.3	942	gCc/gGc																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53226022	53226022	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	56	526	0	ENST00000375401.3:c.2827del	p.Arg943GlufsTer18	p.R943Efs*18	ENST00000375401	NM_004187.3	943	Cga/ga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	200	709	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0022407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	188	331	1	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561495	9561495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146341429		P-0022407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	347	815	1	ENST00000353224.5:c.287G>A	p.Arg96His	p.R96H	ENST00000353224	NM_177990.2	96	cGc/cAc																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117750	70117750	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	451	888	4	ENST00000245479.2:c.218T>A	p.Ile73Asn	p.I73N	ENST00000245479	NM_000346.3	73	aTc/aAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0022407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	514	860	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
RET	5979	MSKCC	GRCh37	10	43606671	43606671	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	354	765	0	ENST00000355710.3:c.1280T>C	p.Val427Ala	p.V427A	ENST00000355710	NM_020975.4	427	gTg/gCg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214791	36214791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	397	820	1	ENST00000222270.7:c.3217C>T	p.Arg1073Cys	p.R1073C	ENST00000222270	NM_014727.1	1073	Cgc/Tgc																																																																															
AXL	558	MSKCC	GRCh37	19	41765543	41765543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	455	810	3	ENST00000301178.4:c.2419C>A	p.Leu807Met	p.L807M	ENST00000301178	NM_021913.4	807	Ctg/Atg																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502390	186502390	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	43	620	0	ENST00000323963.5:c.113T>G	p.Met38Arg	p.M38R	ENST00000323963		38	aTg/aGg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467928	50467946	+	frameshift_variant	Frame_Shift_Del	DEL	CGTCCCCGAGCAACAGCTG	CGTCCCCGAGCAACAGCTG	AGTCC			P-0022407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	190	584	3	ENST00000331340.3:c.1163_1181delinsAGTCC	p.Ala388GlufsTer96	p.A388Efs*96	ENST00000331340	NM_006060.4	388	gCGTCCCCGAGCAACAGCTGc/gAGTCCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	560	801	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	488	629	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057988	27057988	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	111	852	1	ENST00000324856.7:c.1696C>T	p.Gln566Ter	p.Q566*	ENST00000324856	NM_006015.4	566	Cag/Tag																																																																															
DICER1	23405	MSKCC	GRCh37	14	95572056	95572056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	506	836	0	ENST00000343455.3:c.3052G>A	p.Glu1018Lys	p.E1018K	ENST00000343455	NM_177438.2	1018	Gag/Aag																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462112	120462112	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	138	838	0	ENST00000256646.2:c.5604C>G	p.Ser1868Arg	p.S1868R	ENST00000256646	NM_024408.3	1868	agC/agG																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843604	156843604	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	700	966	0	ENST00000524377.1:c.1030G>C	p.Gly344Arg	p.G344R	ENST00000524377	NM_002529.3	344	Ggg/Cgg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212286764	212286764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	111	643	4	ENST00000342788.4:c.2932G>A	p.Ala978Thr	p.A978T	ENST00000342788	NM_005235.2	978	Gct/Act																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134880915	134880915	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	57	695	1	ENST00000398015.3:c.1478T>A	p.Ile493Asn	p.I493N	ENST00000398015	NM_004441.4	493	aTt/aAt																																																																															
TP63	8626	MSKCC	GRCh37	3	189526291	189526291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	63	559	0	ENST00000264731.3:c.555C>A	p.Ser185Arg	p.S185R	ENST00000264731	NM_003722.4	185	agC/agA																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161750	56161750	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0022405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	579	728	0	ENST00000399503.3:c.1247C>G	p.Ser416Ter	p.S416*	ENST00000399503	NM_005921.1	416	tCa/tGa																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935699	13935699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	440	596	0	ENST00000405192.2:c.1157G>A	p.Arg386Lys	p.R386K	ENST00000405192	NM_001163147.1	386	aGa/aAa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70970877	70970877	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0022405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	68	560	0	ENST00000276594.2:c.1384A>G	p.Lys462Glu	p.K462E	ENST00000276594	NM_024504.3	462	Aag/Gag																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367325	50367326	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	A			P-0022405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	100	524	0	ENST00000331340.3:c.132_133delinsA	p.Gln45LysfsTer15	p.Q45Kfs*15	ENST00000331340	NM_006060.4	44	caGCaa/caAaa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0022395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	100	427	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0022395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	167	672	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																															
CCND2	894	MSKCC	GRCh37	12	4409089	4409089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	63	456	0	ENST00000261254.3:c.784C>T	p.Arg262Cys	p.R262C	ENST00000261254	NM_001759.3	262	Cgt/Tgt																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627676	14627676	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	194	724	0	ENST00000254322.2:c.394T>C	p.Ser132Pro	p.S132P	ENST00000254322	NM_006145.1	132	Tct/Cct																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347020	89347020	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	98	686	1	ENST00000301030.4:c.5930C>A	p.Ser1977Ter	p.S1977*	ENST00000301030	NM_001256183.1	1977	tCg/tAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0022423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	208	960	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38060745	38060745	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	77	1227	0	ENST00000250448.2:c.1244T>G	p.Leu415Arg	p.L415R	ENST00000250448	NM_004496.3	415	cTg/cGg																																																																															
REL	5966	MSKCC	GRCh37	2	61148949	61148949	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	116	594	0	ENST00000295025.8:c.1139T>A	p.Val380Asp	p.V380D	ENST00000295025	NM_002908.2	380	gTt/gAt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618878	37618878	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	107	802	0	ENST00000447079.4:c.555del	p.Glu187AsnfsTer4	p.E187Nfs*4	ENST00000447079	NM_015083.1	185	aGg/ag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627388	37627388	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	122	859	0	ENST00000447079.4:c.1303del	p.Val435Ter	p.V435*	ENST00000447079	NM_015083.1	435	Gta/ta																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198273215	198273215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	71	800	3	ENST00000335508.6:c.995G>A	p.Ser332Asn	p.S332N	ENST00000335508	NM_012433.2	332	aGt/aAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	266	716	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0022349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	382	921	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913143	32913143	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	145	624	1	ENST00000380152.3:c.4651C>T	p.Gln1551Ter	p.Q1551*	ENST00000380152		1551	Caa/Taa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604688	48604688	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	111	540	0	ENST00000342988.3:c.1510A>C	p.Ser504Arg	p.S504R	ENST00000342988	NM_005359.5	504	Agt/Cgt																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348980	89348980	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	98	941	0	ENST00000301030.4:c.3970T>C	p.Ser1324Pro	p.S1324P	ENST00000301030	NM_001256183.1	1324	Tct/Cct																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19260061	19260061	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	78	1126	0	ENST00000162023.5:c.232A>G	p.Ser78Gly	p.S78G	ENST00000162023		78	Agc/Ggc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2952926	2952926	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	90	900	0	ENST00000396946.4:c.3014A>G	p.Lys1005Arg	p.K1005R	ENST00000396946	NM_032415.4	1005	aAg/aGg																																																																															
AR	367	MSKCC	GRCh37	X	66863202	66863202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	164	379	0	ENST00000374690.3:c.1721C>T	p.Ala574Val	p.A574V	ENST00000374690	NM_000044.3	574	gCt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0022445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	775	930	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252994	36252995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	264	608	0	ENST00000300305.3:c.367dupG	p.Asp123GlyfsTer15	p.D123Gfs*15	ENST00000300305		123	gat/gGat																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66242741	66242741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	142	471	2	ENST00000273854.3:c.1831G>A	p.Ala611Thr	p.A611T	ENST00000273854	NM_004439.5	611	Gct/Act																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40453355	40453355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	422	1055	0	ENST00000345506.4:c.1052C>T	p.Thr351Ile	p.T351I	ENST00000345506	NM_003152.3	351	aCc/aTc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259204	36259204	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	351	801	0	ENST00000300305.3:c.287A>T	p.Asn96Ile	p.N96I	ENST00000300305		96	aAc/aTc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168491	56168491	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	180	505	0	ENST00000399503.3:c.1447del	p.Arg483GlufsTer4	p.R483Efs*4	ENST00000399503	NM_005921.1	483	Aga/ga																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56168668	56168668	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	221	604	0	ENST00000399503.3:c.1523del	p.Pro508LeufsTer49	p.P508Lfs*49	ENST00000399503	NM_005921.1	508	Cct/ct																																																																															
SOX17	64321	MSKCC	GRCh37	8	55370898	55370898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1392	505	797	0	ENST00000297316.4:c.200G>A	p.Arg67His	p.R67H	ENST00000297316	NM_022454.3	67	cGt/cAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	181	634	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539018	187539018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	41	766	1	ENST00000441802.2:c.8722G>A	p.Val2908Ile	p.V2908I	ENST00000441802	NM_005245.3	2908	Gtc/Atc																																																																															
AURKA	6790	MSKCC	GRCh37	20	54961321	54961321	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs2230743		P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	100	886	1	ENST00000312783.6:c.311C>T	p.Ser104Leu	p.S104L	ENST00000312783	NM_198436.1	104	tCg/tTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5219962	5219962	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	242	942	0	ENST00000357368.4:c.3753G>C	p.Gln1251His	p.Q1251H	ENST00000357368	NM_002850.3	1251	caG/caC																																																																															
AGO2	27161	MSKCC	GRCh37	8	141549464	141549464	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	80	701	0	ENST00000220592.5:c.2124G>C	p.Gln708His	p.Q708H	ENST00000220592	NM_012154.3	708	caG/caC																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874229	155874229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	182	861	3	ENST00000368323.3:c.302C>T	p.Ser101Phe	p.S101F	ENST00000368323	NM_006912.5	101	tCt/tTt																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176054989	176054989	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	42	775	0	ENST00000367669.3:c.1064C>G	p.Ser355Ter	p.S355*	ENST00000367669	NM_022457.5	355	tCa/tGa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233255	46233255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	61	623	0	ENST00000334344.6:c.1474C>A	p.Gln492Lys	p.Q492K	ENST00000334344	NM_152641.2	492	Cag/Aag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233276	46233276	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	55	560	0	ENST00000334344.6:c.1495C>A	p.Pro499Thr	p.P499T	ENST00000334344	NM_152641.2	499	Cca/Aca																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424446	49424461	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTCAGCTGGCTCTG	CCCTCAGCTGGCTCTG	-			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	69	937	0	ENST00000301067.7:c.13762_13777del	p.Gln4588GlyfsTer24	p.Q4588Gfs*24	ENST00000301067	NM_003482.3	4588	CAGAGCCAGCTGAGGGgg/gg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427104	49427104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	75	779	0	ENST00000301067.7:c.11384C>A	p.Pro3795His	p.P3795H	ENST00000301067	NM_003482.3	3795	cCc/cAc																																																																															
MGA	23269	MSKCC	GRCh37	15	42054438	42054438	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	45	667	0	ENST00000219905.7:c.7622C>G	p.Ser2541Cys	p.S2541C	ENST00000219905	NM_001164273.1	2541	tCt/tGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579359	7579359	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	290	948	0	ENST00000269305.4:c.328C>G	p.Arg110Gly	p.R110G	ENST00000269305	NM_001126112.2	110	Cgt/Ggt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602449	10602449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	132	838	0	ENST00000171111.5:c.1129G>A	p.Val377Met	p.V377M	ENST00000171111	NM_203500.1	377	Gtg/Atg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12626737	12626737	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	46	708	3	ENST00000251849.4:c.1552C>T	p.Arg518Ter	p.R518*	ENST00000251849	NM_002880.3	518	Cga/Tga																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288999	33288999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	44	724	0	ENST00000374542.5:c.553C>T	p.Arg185Trp	p.R185W	ENST00000374542	NM_001141970.1	185	Cgg/Tgg																																																																															
MET	4233	MSKCC	GRCh37	7	116395524	116395524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	55	755	0	ENST00000397752.3:c.1817G>A	p.Gly606Glu	p.G606E	ENST00000397752	NM_000245.2	606	gGa/gAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878659	151878659	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	105	703	1	ENST00000262189.6:c.6286C>T	p.Gln2096Ter	p.Q2096*	ENST00000262189	NM_170606.2	2096	Cag/Tag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233219	46233219	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	AA			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	72	637	0	ENST00000334344.6:c.1438delinsAA	p.Glu480LysfsTer3	p.E480Kfs*3	ENST00000334344	NM_152641.2	480	Gaa/AAaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	125	801	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0022342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	32	643	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354069	15354069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	41	629	0	ENST00000263377.2:c.2811G>C	p.Lys937Asn	p.K937N	ENST00000263377	NM_058243.2	937	aaG/aaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0022448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	398	846	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																															
RB1	5925	MSKCC	GRCh37	13	48916774	48916775	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0022448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	75	702	1	ENST00000267163.4:c.305_306del	p.Cys102TyrfsTer7	p.C102Yfs*7	ENST00000267163	NM_000321.2	102	TGt/t																																																																															
NF1	4763	MSKCC	GRCh37	17	29657420	29657421	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0022448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	429	838	0	ENST00000358273.4:c.5718_5719del	p.Phe1907TyrfsTer5	p.F1907Yfs*5	ENST00000358273	NM_001042492.2	1906	CTc/c																																																																															
EP300	2033	MSKCC	GRCh37	22	41572929	41572937	+	inframe_deletion	In_Frame_Del	DEL	CATCCAGTC	CATCCAGTC	-			P-0022448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	136	826	0	ENST00000263253.7:c.5214_5222del	p.Ile1739_Ser1741del	p.I1739_S1741del	ENST00000263253	NM_001429.3	1738	tgCATCCAGTCt/tgt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589619	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAGAATATGATA			P-0022448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	54	483	0	ENST00000274335.5:c.1384_1395dup	p.Glu462_Arg465dup	p.E462_R465dup	ENST00000274335		462	cga/cGAGAATATGATAga																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32164805	32164806	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0022448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	114	775	0	ENST00000375023.3:c.5096_5097del	p.Glu1699GlyfsTer19	p.E1699Gfs*19	ENST00000375023	NM_004557.3	1699	gAG/g																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	104	731	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0022350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	44	469	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
CDH1	999	MSKCC	GRCh37	16	68772209	68772231	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCTCTGCCAGGAGCCGGAGCC	TGGCTCTGCCAGGAGCCGGAGCC	-			P-0022350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	78	908	0	ENST00000261769.5:c.58_80del	p.Trp20LeufsTer6	p.W20Lfs*6	ENST00000261769	NM_004360.3	20	TGGCTCTGCCAGGAGCCGGAGCCc/c																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0022453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	132	835	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0022453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	155	935	2	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41100952	41100952	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	87	845	0	ENST00000373198.4:c.1404G>T	p.Glu468Asp	p.E468D	ENST00000373198	NM_133170.3	468	gaG/gaT																																																																															
POLE	5426	MSKCC	GRCh37	12	133257756	133257756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	75	969	0	ENST00000320574.5:c.172G>A	p.Glu58Lys	p.E58K	ENST00000320574	NM_006231.2	58	Gag/Aag																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639376	3639376	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	62	995	0	ENST00000294008.3:c.4263T>G	p.Ile1421Met	p.I1421M	ENST00000294008	NM_032444.2	1421	atT/atG																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777729	3777729	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	87	1138	0	ENST00000262367.5:c.7319A>T	p.Glu2440Val	p.E2440V	ENST00000262367	NM_004380.2	2440	gAg/gTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106164773	106164773	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	66	708	0	ENST00000380013.4:c.3641G>T	p.Arg1214Leu	p.R1214L	ENST00000380013	NM_001127208.2	1214	cGg/cTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1295305	1295305	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0022453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	85	778	0				ENST00000310581	NM_198253.2																																																																																	
MSH3	4437	MSKCC	GRCh37	5	79974749	79974749	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	129	725	1	ENST00000265081.6:c.1177G>T	p.Val393Leu	p.V393L	ENST00000265081	NM_002439.4	393	Gtg/Ttg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187966	32187967	+	missense_variant	Missense_Mutation	DNP	GG	GG	TC			P-0022453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	132	1014	3	ENST00000375023.3:c.1254_1255delinsGA	p.Cys418_Leu419delinsTrpMet	p.C418_L419delinsWM	ENST00000375023	NM_004557.3	418	tgCCtg/tgGAtg																																																																															
AR	367	MSKCC	GRCh37	X	66943526	66943526	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0022453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	93	632	0	ENST00000374690.3:c.2608-2A>T		p.X870_splice	ENST00000374690	NM_000044.3	870																																																																																
MED12	9968	MSKCC	GRCh37	X	70348452	70348452	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	154	740	0	ENST00000374080.3:c.3359G>T	p.Ser1120Ile	p.S1120I	ENST00000374080		1120	aGt/aTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0022454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	386	863	16	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga																																																																															
SPEN	23013	MSKCC	GRCh37	1	16242647	16242647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	296	642	3	ENST00000375759.3:c.1268G>A	p.Arg423His	p.R423H	ENST00000375759	NM_015001.2	423	cGc/cAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68772211	68772211	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	426	770	2	ENST00000261769.5:c.60G>A	p.Trp20Ter	p.W20*	ENST00000261769	NM_004360.3	20	tgG/tgA																																																																															
CDH1	999	MSKCC	GRCh37	16	68772215	68772215	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	441	818	0	ENST00000261769.5:c.64T>A	p.Cys22Ser	p.C22S	ENST00000261769	NM_004360.3	22	Tgc/Agc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439125	52439125	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0022454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	325	667	5	ENST00000460680.1:c.1116+1G>A		p.X372_splice	ENST00000460680	NM_004656.3	372																																																																																
TERT	7015	MSKCC	GRCh37	5	1293771	1293771	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	429	914	7	ENST00000310581.5:c.1230G>C	p.Lys410Asn	p.K410N	ENST00000310581	NM_198253.2	410	aaG/aaC																																																																															
HGF	3082	MSKCC	GRCh37	7	81358928	81358928	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0022454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	278	588	2	ENST00000222390.5:c.1033A>T	p.Lys345Ter	p.K345*	ENST00000222390	NM_000601.4	345	Aag/Tag																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971020	21971020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	257	575	3	ENST00000304494.5:c.338T>C	p.Leu113Pro	p.L113P	ENST00000304494	NM_000077.4	113	cTg/cCg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0022365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	71	607	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0021156-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			576	33	643	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0021156-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			568	63	702	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591933	48591933	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1060500733		P-0021156-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	32	506	0	ENST00000342988.3:c.1096C>T	p.Gln366Ter	p.Q366*	ENST00000342988	NM_005359.5	366	Caa/Taa																																																																															
CIC	23152	MSKCC	GRCh37	19	42794777	42794789	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTCCCAGCGGA	CCCTCCCAGCGGA	TG			P-0021156-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			480	31	528	3	ENST00000575354.2:c.1857_1869delinsTG	p.Pro620GlyfsTer66	p.P620Gfs*66	ENST00000575354	NM_015125.3	619	gcCCCTCCCAGCGGA/gcTG																																																																															
GNAS	2778	MSKCC	GRCh37	20	57478763	57478763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021156-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	46	407	0	ENST00000371085.3:c.349G>A	p.Val117Met	p.V117M	ENST00000371085	NM_000516.4	117	Gtg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	161	744	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99155357	99155357	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	40	443	2	ENST00000074304.5:c.583G>T	p.Val195Phe	p.V195F	ENST00000074304	NM_001134224.1	195	Gtt/Ttt																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520152	9520152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	39	504	0	ENST00000353224.5:c.2117C>A	p.Pro706Gln	p.P706Q	ENST00000353224	NM_177990.2	706	cCg/cAg																																																																															
MGA	23269	MSKCC	GRCh37	15	42041800	42041800	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	41	502	2	ENST00000219905.7:c.5995G>T	p.Glu1999Ter	p.E1999*	ENST00000219905	NM_001164273.1	1999	Gag/Tag																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741681	17741681	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	66	601	0	ENST00000250003.3:c.352G>T	p.Glu118Ter	p.E118*	ENST00000250003	NM_002478.4	118	Gag/Tag																																																																															
ATM	472	MSKCC	GRCh37	11	108141986	108141986	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	60	501	2	ENST00000278616.4:c.2930G>T	p.Cys977Phe	p.C977F	ENST00000278616	NM_000051.3	977	tGt/tTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831923	72831923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	87	913	0	ENST00000268489.5:c.4658C>T	p.Ser1553Phe	p.S1553F	ENST00000268489	NM_006885.3	1553	tCt/tTt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244877	41244877	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	58	686	0	ENST00000357654.3:c.2671T>A	p.Ser891Thr	p.S891T	ENST00000357654	NM_007294.3	891	Tcc/Acc																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10247857	10247857	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	57	873	0	ENST00000340748.4:c.4345G>T	p.Gly1449Cys	p.G1449C	ENST00000340748		1449	Ggc/Tgc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36213999	36213999	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	71	850	1	ENST00000222270.7:c.2825G>T	p.Gly942Val	p.G942V	ENST00000222270	NM_014727.1	942	gGa/gTa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713353	40713353	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	66	764	0	ENST00000373198.4:c.4162G>C	p.Gly1388Arg	p.G1388R	ENST00000373198	NM_133170.3	1388	Ggg/Cgg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164234	47164234	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	49	474	0	ENST00000409792.3:c.1892A>T	p.Asp631Val	p.D631V	ENST00000409792	NM_014159.6	631	gAt/gTt																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31409357	31409357	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	110	595	0	ENST00000344624.3:c.3750A>T	p.Lys1250Asn	p.K1250N	ENST00000344624		1250	aaA/aaT																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149501467	149501467	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	65	826	2	ENST00000261799.4:c.2320C>A	p.Pro774Thr	p.P774T	ENST00000261799	NM_002609.3	774	Cct/Act																																																																															
MET	4233	MSKCC	GRCh37	7	116339827	116339827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	40	588	1	ENST00000397752.3:c.689C>T	p.Thr230Met	p.T230M	ENST00000397752	NM_000245.2	230	aCg/aTg																																																																															
ABL1	25	MSKCC	GRCh37	9	133760450	133760450	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	45	676	1	ENST00000318560.5:c.2773G>T	p.Glu925Ter	p.E925*	ENST00000318560	NM_005157.4	925	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	140	650	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	95	657	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477089	67477103	+	inframe_deletion	In_Frame_Del	DEL	TCGGAGGGGAGGTCT	TCGGAGGGGAGGTCT	-			P-0022085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	182	496	0	ENST00000327367.4:c.899_913del	p.Gly300_Phe304del	p.G300_F304del	ENST00000327367	NM_005902.3	299	aTCGGAGGGGAGGTCTtc/atc																																																																															
ERF	2077	MSKCC	GRCh37	19	42753597	42753597	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	139	790	1	ENST00000222329.4:c.667G>T	p.Ala223Ser	p.A223S	ENST00000222329	NM_006494.2	223	Gcc/Tcc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200670	128200670	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	99	677	0	ENST00000341105.2:c.1135C>G	p.Leu379Val	p.L379V	ENST00000341105	NM_032638.4	379	Ctg/Gtg																																																																															
ATR	545	MSKCC	GRCh37	3	142268984	142268984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	94	422	0	ENST00000350721.4:c.2966G>A	p.Arg989His	p.R989H	ENST00000350721	NM_001184.3	989	cGt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0022294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	30	575	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0022230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	239	651	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	201	451	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0022230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	80	422	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0022230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	26	391	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																															
APC	324	MSKCC	GRCh37	5	112163696	112163697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	67	453	0	ENST00000257430.4:c.1620dupA	p.Gln541ThrfsTer19	p.Q541Tfs*19	ENST00000257430	NM_000038.5	540	tta/ttAa																																																																															
MED12	9968	MSKCC	GRCh37	X	70347217	70347217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	255	351	0	ENST00000374080.3:c.2881C>T	p.Arg961Trp	p.R961W	ENST00000374080		961	Cgg/Tgg																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473704	67473704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	171	674	0	ENST00000327367.4:c.784G>A	p.Asp262Asn	p.D262N	ENST00000327367	NM_005902.3	262	Gac/Aac																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246078897	246078897	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145023938		P-0022230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	193	698	2	ENST00000388985.4:c.748C>T	p.Arg250Trp	p.R250W	ENST00000388985		250	Cgg/Tgg																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40375464	40375464	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	138	832	0	ENST00000293328.3:c.486A>T	p.Leu162Phe	p.L162F	ENST00000293328	NM_012448.3	162	ttA/ttT																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212611	36212611	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	231	959	0	ENST00000222270.7:c.2362G>T	p.Val788Leu	p.V788L	ENST00000222270	NM_014727.1	788	Gta/Tta																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220868	36220868	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	22	181	0	ENST00000222270.7:c.4918C>T	p.Arg1640Cys	p.R1640C	ENST00000222270	NM_014727.1	1640	Cgc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010000-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			835	277	746	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0010000-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			890	283	853	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010000-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			737	82	598	0	ENST00000324856.7:c.3977dupC	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																															
B2M	567	MSKCC	GRCh37	15	45003763	45003763	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010000-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			829	111	694	0	ENST00000558401.1:c.19T>G	p.Leu7Val	p.L7V	ENST00000558401	NM_004048.2	7	Tta/Gta																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797337	135797337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	199	440	1	ENST00000298552.3:c.532G>A	p.Val178Ile	p.V178I	ENST00000298552	NM_001162426.1	178	Gtc/Atc																																																																															
TET2	54790	MSKCC	GRCh37	4	106196424	106196424	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	178	635	1	ENST00000380013.4:c.4757C>A	p.Ser1586Ter	p.S1586*	ENST00000380013	NM_001127208.2	1586	tCa/tAa																																																																															
AR	367	MSKCC	GRCh37	X	66943606	66943606	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	288	378	0	ENST00000374690.3:c.2686A>G	p.Met896Val	p.M896V	ENST00000374690	NM_000044.3	896	Atg/Gtg																																																																															
ATRX	546	MSKCC	GRCh37	X	76763873	76763873	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200478641		P-0022179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	91	389	0	ENST00000373344.5:c.7435A>G	p.Met2479Val	p.M2479V	ENST00000373344	NM_000489.3	2479	Atg/Gtg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	8	709	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	213	748	2	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099093	27099093	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	195	670	0	ENST00000324856.7:c.3509A>C	p.His1170Pro	p.H1170P	ENST00000324856	NM_006015.4	1170	cAc/cCc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	325	714	1	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																															
BRAF	673	MSKCC	GRCh37	7	140453148	140453148	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	112	496	0	ENST00000288602.6:c.1787G>T	p.Gly596Val	p.G596V	ENST00000288602	NM_004333.4	596	gGt/gTt																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143067050	143067050	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	134	614	0	ENST00000262992.4:c.1663A>C	p.Asn555His	p.N555H	ENST00000262992	NM_001101669.1	555	Aac/Cac																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31435899	31435899	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	38	506	0	ENST00000344624.3:c.3015G>T	p.Gln1005His	p.Q1005H	ENST00000344624		1005	caG/caT																																																																															
FGF19	9965	MSKCC	GRCh37	11	69514290	69514290	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	353	729	2	ENST00000294312.3:c.391T>A	p.Tyr131Asn	p.Y131N	ENST00000294312	NM_005117.2	131	Tac/Aac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118352490	118352490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	159	583	0	ENST00000534358.1:c.3695G>T	p.Ser1232Ile	p.S1232I	ENST00000534358	NM_005933.3	1232	aGt/aTt																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944913	31944913	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	134	258	0	ENST00000340398.3:c.188G>C	p.Arg63Pro	p.R63P	ENST00000340398	NM_001013699.2	63	cGg/cCg																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281237	49281237	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	161	781	1	ENST00000282018.3:c.284C>A	p.Ala95Asp	p.A95D	ENST00000282018	NM_020377.2	95	gCt/gAt																																																																															
MAX	4149	MSKCC	GRCh37	14	65560425	65560425	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	65	348	0	ENST00000358664.4:c.171+1G>T		p.X57_splice	ENST00000358664	NM_002382.4	57																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9943819	9943819	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	112	354	0	ENST00000330684.3:c.1123-1G>C		p.X375_splice	ENST00000330684	NM_001134407.1	375																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72991761	72991761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	127	417	0	ENST00000268489.5:c.2284G>T	p.Gly762Trp	p.G762W	ENST00000268489	NM_006885.3	762	Ggg/Tgg																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33430338	33430338	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	220	634	0	ENST00000335858.7:c.337G>T	p.Ala113Ser	p.A113S	ENST00000335858	NM_133629.2	113	Gcc/Tcc																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46804336	46804336	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	203	600	0	ENST00000290295.7:c.671G>T	p.Ser224Ile	p.S224I	ENST00000290295	NM_006361.5	224	aGc/aTc																																																																															
YES1	7525	MSKCC	GRCh37	18	756628	756628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	126	582	0	ENST00000314574.4:c.200G>T	p.Gly67Val	p.G67V	ENST00000314574	NM_005433.3	67	gGg/gTg																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955123	17955123	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	267	706	0	ENST00000458235.1:c.104C>G	p.Pro35Arg	p.P35R	ENST00000458235	NM_000215.3	35	cCc/cGc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190738269	190738270	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	152	398	0	ENST00000441310.2:c.2521_2522insA	p.Cys841Ter	p.C841*	ENST00000441310	NM_000534.4	841	tgt/tAgt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660217	227660217	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	218	767	0	ENST00000305123.5:c.3238A>C	p.Asn1080His	p.N1080H	ENST00000305123	NM_005544.2	1080	Aac/Cac																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40727174	40727175	+	missense_variant	Missense_Mutation	DNP	CG	CG	AC			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	200	567	1	ENST00000373198.4:c.3789_3790delinsGT	p.Ala1264Ser	p.A1264S	ENST00000373198	NM_133170.3	1263	gcCGcc/gcGTcc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528582	89528582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	23	399	0	ENST00000336596.2:c.2882C>A	p.Pro961Gln	p.P961Q	ENST00000336596	NM_005233.5	961	cCa/cAa																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143094963	143094963	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	46	437	2	ENST00000262992.4:c.1182-1G>T		p.X394_splice	ENST00000262992	NM_001101669.1	394																																																																																
FAT1	2195	MSKCC	GRCh37	4	187521269	187521269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	175	663	1	ENST00000441802.2:c.11886G>T	p.Arg3962Ser	p.R3962S	ENST00000441802	NM_005245.3	3962	agG/agT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180052955	180052955	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	222	802	0	ENST00000261937.6:c.1335del	p.Cys445Ter	p.C445*	ENST00000261937	NM_182925.4	445	tgC/tg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962826	2962827	+	missense_variant	Missense_Mutation	DNP	CG	CG	GA			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	213	639	2	ENST00000396946.4:c.2081_2082delinsTC	p.Ser694Phe	p.S694F	ENST00000396946	NM_032415.4	694	tCG/tTC																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521418	8521418	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	273	736	0	ENST00000356435.5:c.820G>C	p.Glu274Gln	p.E274Q	ENST00000356435		274	Gaa/Caa																																																																															
PAX5	5079	MSKCC	GRCh37	9	37020693	37020693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	216	549	0	ENST00000358127.4:c.152C>A	p.Pro51His	p.P51H	ENST00000358127	NM_001280556.1	51	cCc/cAc																																																																															
ATRX	546	MSKCC	GRCh37	X	76938389	76938389	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	31	383	2	ENST00000373344.5:c.2359G>T	p.Gly787Cys	p.G787C	ENST00000373344	NM_000489.3	787	Ggc/Tgc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0022103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	240	623	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0022103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	20	135	0	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																																																															
APC	324	MSKCC	GRCh37	5	112174691	112174691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	44	363	0	ENST00000257430.4:c.3400G>A	p.Asp1134Asn	p.D1134N	ENST00000257430	NM_000038.5	1134	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577505	7577505	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	281	698	0	ENST00000269305.4:c.776A>T	p.Asp259Val	p.D259V	ENST00000269305	NM_001126112.2	259	gAc/gTc																																																																															
IL7R	3575	MSKCC	GRCh37	5	35873630	35873630	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	80	341	0	ENST00000303115.3:c.586C>T	p.Gln196Ter	p.Q196*	ENST00000303115	NM_002185.3	196	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	368	794	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
APC	324	MSKCC	GRCh37	5	112175163	112175170	+	frameshift_variant	Frame_Shift_Del	DEL	AGACGACA	AGACGACA	-			P-0022150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	73	309	0	ENST00000257430.4:c.3872_3879del	p.Gln1291ProfsTer7	p.Q1291Pfs*7	ENST00000257430	NM_000038.5	1291	cAGACGACA/c																																																																															
ARAF	369	MSKCC	GRCh37	X	47426498	47426498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	27	430	0	ENST00000377045.4:c.841C>T	p.Arg281Trp	p.R281W	ENST00000377045	NM_001654.4	281	Cgg/Tgg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123181348	123181348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	40	148	1	ENST00000218089.9:c.812G>A	p.Arg271Gln	p.R271Q	ENST00000218089	NM_001042749.1	271	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	159	721	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0022041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	208	826	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0022041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	64	560	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508173	106508173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	46	340	1	ENST00000359195.3:c.167C>T	p.Thr56Met	p.T56M	ENST00000359195	NM_002649.2	56	aCg/aTg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971109	+	missense_variant	Missense_Mutation	DNP	CG	CG	GT			P-0022041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	61	583	1	ENST00000304494.5:c.249_250delinsAC	p.His83_Asp84delinsGlnHis	p.H83_D84delinsQH	ENST00000304494	NM_000077.4	83	caCGac/caACac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	82	856	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	93	704	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MTOR	2475	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	125	805	0	ENST00000361445.4:c.6644C>T	p.Ser2215Phe	p.S2215F	ENST00000361445	NM_004958.3	2215	tCt/tTt																																																																															
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0021998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	186	679	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	62	525	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	95	796	2	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044850	47044850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	336	419	1	ENST00000329236.7:c.1942C>T	p.Arg648Ter	p.R648*	ENST00000329236	NM_001204466.1	648	Cga/Tga																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29910617	29910617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	97	842	0	ENST00000376809.5:c.157G>A	p.Asp53Asn	p.D53N	ENST00000376809	NM_002116.7	53	Gac/Aac																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118347680	118347680	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	102	545	0	ENST00000534358.1:c.3317C>G	p.Ser1106Cys	p.S1106C	ENST00000534358	NM_005933.3	1106	tCt/tGt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991387	72991387	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	140	811	0	ENST00000268489.5:c.2658C>G	p.Phe886Leu	p.F886L	ENST00000268489	NM_006885.3	886	ttC/ttG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	58	698	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
MED12	9968	MSKCC	GRCh37	X	70357575	70357575	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	77	672	1	ENST00000374080.3:c.5827-1G>T		p.X1943_splice	ENST00000374080		1943																																																																																
TP53	7157	MSKCC	GRCh37	17	7577107	7577107	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	91	672	0	ENST00000269305.4:c.831T>A	p.Cys277Ter	p.C277*	ENST00000269305	NM_001126112.2	277	tgT/tgA																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289116	33289116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	76	647	0	ENST00000374542.5:c.436G>A	p.Ala146Thr	p.A146T	ENST00000374542	NM_001141970.1	146	Gcc/Acc																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111080	193111080	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	41	366	0	ENST00000367435.3:c.613A>G	p.Ile205Val	p.I205V	ENST00000367435	NM_024529.4	205	Ata/Gta																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983123	201983129	+	frameshift_variant	Frame_Shift_Del	DEL	GACCTAC	GACCTAC	-			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	62	589	0	ENST00000359651.3:c.974_980del	p.Thr325ArgfsTer3	p.T325Rfs*3	ENST00000359651		324	atGACCTAC/at																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316109	14316109	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	21	341	0	ENST00000256196.4:c.316A>G	p.Lys106Glu	p.K106E	ENST00000256196		106	Aag/Gag																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946469	71946469	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	71	687	2	ENST00000298229.2:c.2633G>T	p.Arg878Leu	p.R878L	ENST00000298229	NM_001567.3	878	cGc/cTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426489	49426489	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	60	858	1	ENST00000301067.7:c.11999G>T	p.Gly4000Val	p.G4000V	ENST00000301067	NM_003482.3	4000	gGc/gTc																																																																															
MSI1	4440	MSKCC	GRCh37	12	120784012	120784012	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	64	713	0	ENST00000257552.2:c.973C>A	p.Gln325Lys	p.Q325K	ENST00000257552	NM_002442.3	325	Cag/Aag																																																																															
MGA	23269	MSKCC	GRCh37	15	41989179	41989179	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	62	695	0	ENST00000219905.7:c.1972del	p.Glu658LysfsTer17	p.E658Kfs*17	ENST00000219905	NM_001164273.1	657	ctG/ct																																																																															
SDHA	6389	MSKCC	GRCh37	5	233671	233671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	22	264	0	ENST00000264932.6:c.975G>T	p.Arg325Ser	p.R325S	ENST00000264932	NM_004168.2	325	agG/agT																																																																															
TERT	7015	MSKCC	GRCh37	5	1293894	1293894	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	42	879	0	ENST00000310581.5:c.1107G>T	p.Arg369Ser	p.R369S	ENST00000310581	NM_198253.2	369	agG/agT																																																																															
APC	324	MSKCC	GRCh37	5	112177569	112177569	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	26	407	0	ENST00000257430.4:c.6281del	p.Pro2094LeufsTer18	p.P2094Lfs*18	ENST00000257430	NM_000038.5	2093	tCc/tc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515423	149515423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	67	474	0	ENST00000261799.4:c.59C>T	p.Ser20Phe	p.S20F	ENST00000261799	NM_002609.3	20	tCt/tTt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372431	55372431	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	51	778	0	ENST00000297316.4:c.1121A>T	p.Glu374Val	p.E374V	ENST00000297316	NM_022454.3	374	gAg/gTg																																																																															
LYN	4067	MSKCC	GRCh37	8	56879407	56879410	+	missense_variant	Missense_Mutation	ONP	GGTC	GGTC	TTGT			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	34	643	3	ENST00000519728.1:c.924_927delinsTTGT	p.Val309Cys	p.V309C	ENST00000519728	NM_002350.3	308	gtGGTC/gtTTGT																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591085	67591085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	41	284	0	ENST00000274335.5:c.1678G>T	p.Asp560Tyr	p.D560Y	ENST00000274335		560	Gac/Tac																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244157	41244157	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	96	642	0	ENST00000357654.3:c.3391G>C	p.Asp1131His	p.D1131H	ENST00000357654	NM_007294.3	1131	Gat/Cat																																																																															
HRAS	3265	MSKCC	GRCh37	11	533893	533893	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	190	771	0	ENST00000311189.7:c.163A>G	p.Ile55Val	p.I55V	ENST00000311189		55	Atc/Gtc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125503201	125503201	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	162	349	0	ENST00000428830.2:c.568G>C	p.Asp190His	p.D190H	ENST00000428830	NM_001114121.2	190	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7579353	7579363	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGACGGAAA	CCAGACGGAAA	GTTT			P-0022306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	624	784	2	ENST00000269305.4:c.324_334delinsAAAC	p.Phe109AsnfsTer12	p.F109Nfs*12	ENST00000269305	NM_001126112.2	108	ggTTTCCGTCTGGgc/ggAAACgc																																																																															
ATR	545	MSKCC	GRCh37	3	142215926	142215926	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	107	545	0	ENST00000350721.4:c.5667G>T	p.Met1889Ile	p.M1889I	ENST00000350721	NM_001184.3	1889	atG/atT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8471015	8471015	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	60	527	0	ENST00000356435.5:c.3484G>T	p.Asp1162Tyr	p.D1162Y	ENST00000356435		1162	Gat/Tat																																																																															
ATRX	546	MSKCC	GRCh37	X	76888873	76888873	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0022327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	431	339	0	ENST00000373344.5:c.4957-1G>A		p.X1653_splice	ENST00000373344	NM_000489.3	1653																																																																																
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	112	582	0	ENST00000269305.4:c.706T>G	p.Tyr236Asp	p.Y236D	ENST00000269305	NM_001126112.2	236	Tac/Gac																																																																															
ATR	545	MSKCC	GRCh37	3	142279165	142279165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	27	470	0	ENST00000350721.4:c.1481C>T	p.Ala494Val	p.A494V	ENST00000350721	NM_001184.3	494	gCt/gTt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	128	648	0	ENST00000342988.3:c.1051G>T	p.Asp351Tyr	p.D351Y	ENST00000342988	NM_005359.5	351	Gat/Tat																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0022065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	453	878	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177933	56177933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	290	653	0	ENST00000399503.3:c.2906C>T	p.Ser969Phe	p.S969F	ENST00000399503	NM_005921.1	969	tCc/tTc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	384	619	0	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572164	64572164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	36	585	0	ENST00000337652.1:c.1490C>T	p.Pro497Leu	p.P497L	ENST00000337652	NM_130803.2	497	cCc/cTc																																																																															
PAK1	5058	MSKCC	GRCh37	11	77051789	77051789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	167	656	0	ENST00000356341.3:c.1018C>G	p.Leu340Val	p.L340V	ENST00000356341	NM_002576.4	340	Ctg/Gtg																																																																															
ATRX	546	MSKCC	GRCh37	X	76939492	76939492	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374958282		P-0022065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	21	819	0	ENST00000373344.5:c.1256C>T	p.Ala419Val	p.A419V	ENST00000373344	NM_000489.3	419	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0022023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	57	774	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0022023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	33	487	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591889	48591889	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	15	658	0	ENST00000342988.3:c.1052A>C	p.Asp351Ala	p.D351A	ENST00000342988	NM_005359.5	351	gAt/gCt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0021969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	64	598	1	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111517	8111518	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	275	912	0	ENST00000346208.3:c.1004dupA	p.Asp335GlufsTer17	p.D335Efs*17	ENST00000346208		335	gac/gAac																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533605	63533605	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	1655	1228	0	ENST00000307078.5:c.1549C>G	p.His517Asp	p.H517D	ENST00000307078	NM_004655.3	517	Cac/Gac																																																																															
PMS1	5378	MSKCC	GRCh37	2	190719497	190719497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	28	357	0	ENST00000441310.2:c.1499G>A	p.Arg500Lys	p.R500K	ENST00000441310	NM_000534.4	500	aGg/aAg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123245021	123245021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	62	536	0	ENST00000358487.5:c.2083G>A	p.Glu695Lys	p.E695K	ENST00000358487	NM_000141.4	695	Gag/Aag																																																																															
TET1	80312	MSKCC	GRCh37	10	70332478	70332478	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	97	622	0	ENST00000373644.4:c.384del	p.Pro129HisfsTer6	p.P129Hfs*6	ENST00000373644	NM_030625.2	128	gTt/gt																																																																															
EED	8726	MSKCC	GRCh37	11	85975146	85975238	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCACAAGATGTTGAAAGTTCACAGTAAATAAAAAACATTCGCCTAATTTTTGTATGTTTATACTAGATCATGCTTTACGATTATGGAATAT	TTTCACAAGATGTTGAAAGTTCACAGTAAATAAAAAACATTCGCCTAATTTTTGTATGTTTATACTAGATCATGCTTTACGATTATGGAATAT	-			P-0021980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	13	74	0	ENST00000263360.6:c.635-68_659del		p.X212_splice	ENST00000263360	NM_003797.3	212																																																																																
AR	367	MSKCC	GRCh37	X	66943609	66943609	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	96	681	1	ENST00000374690.3:c.2689G>T	p.Ala897Ser	p.A897S	ENST00000374690	NM_000044.3	897	Gca/Tca																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0022127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2608	78	644	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040904	47040904	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0022127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	109	867	0	ENST00000329236.7:c.1202-2A>T		p.X401_splice	ENST00000329236	NM_001204466.1	401																																																																																
HGF	3082	MSKCC	GRCh37	7	81359039	81359039	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	46	673	1	ENST00000222390.5:c.922G>T	p.Gly308Cys	p.G308C	ENST00000222390	NM_000601.4	308	Ggt/Tgt																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429754	78429754	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	24	408	0	ENST00000370768.2:c.1034del	p.Ser345MetfsTer46	p.S345Mfs*46	ENST00000370768	NM_003902.3	345	aGt/at																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101904831	101904831	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	290	478	1	ENST00000374994.4:c.819G>A	p.Trp273Ter	p.W273*	ENST00000374994	NM_004612.2	273	tgG/tgA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	809	897	0	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057835	27057835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	357	1071	2	ENST00000324856.7:c.1543C>T	p.Gln515Ter	p.Q515*	ENST00000324856	NM_006015.4	515	Cag/Tag																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056024	26056024	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	50	366	0	ENST00000343677.2:c.633G>C	p.Lys211Asn	p.K211N	ENST00000343677	NM_005319.3	211	aaG/aaC																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436088	49436088	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	229	475	1	ENST00000301067.7:c.5893G>T	p.Glu1965Ter	p.E1965*	ENST00000301067	NM_003482.3	1965	Gaa/Taa																																																																															
KIT	3815	MSKCC	GRCh37	4	55561756	55561756	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376469897		P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	54	465	0	ENST00000288135.5:c.146G>A	p.Arg49His	p.R49H	ENST00000288135	NM_000222.2	49	cGc/cAc																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2491373	2491373	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	179	938	0	ENST00000355716.4:c.416G>T	p.Arg139Leu	p.R139L	ENST00000355716	NM_003820.2	139	cGc/cTc																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780699	9780699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	78	724	2	ENST00000377346.4:c.1501G>A	p.Val501Met	p.V501M	ENST00000377346	NM_005026.3	501	Gtg/Atg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057841	27057841	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	354	1055	1	ENST00000324856.7:c.1549C>A	p.Pro517Thr	p.P517T	ENST00000324856	NM_006015.4	517	Cca/Aca																																																																															
SDHC	6391	MSKCC	GRCh37	1	161310405	161310405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	290	674	0	ENST00000367975.2:c.201G>A	p.Met67Ile	p.M67I	ENST00000367975	NM_003001.3	67	atG/atA																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195806	102195806	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	116	525	0	ENST00000263464.3:c.566T>C	p.Leu189Pro	p.L189P	ENST00000263464	NM_001165.4	189	cTg/cCg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18491359	18491359	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	73	405	0	ENST00000266497.5:c.1273del		p.X425_splice	ENST00000266497		425																																																																																
TBX3	6926	MSKCC	GRCh37	12	115109646	115109646	+	stop_lost	Nonstop_Mutation	SNP	C	C	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	163	967	0	ENST00000257566.3:c.2232G>T	p.Ter744TyrextTer22	p.*744Yext*22	ENST00000257566	NM_016569.3	744	taG/taT																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121437361	121437361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	330	891	1	ENST00000257555.6:c.1699G>A	p.Val567Ile	p.V567I	ENST00000257555		567	Gtc/Atc																																																																															
RB1	5925	MSKCC	GRCh37	13	49037896	49037896	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	285	670	0	ENST00000267163.4:c.2136C>A	p.Cys712Ter	p.C712*	ENST00000267163	NM_000321.2	712	tgC/tgA																																																																															
MGA	23269	MSKCC	GRCh37	15	42032306	42032306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	443	797	0	ENST00000219905.7:c.4490C>T	p.Ser1497Leu	p.S1497L	ENST00000219905	NM_001164273.1	1497	tCa/tTa																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343541	343542	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	332	931	0	ENST00000262320.3:c.2132_2133del	p.Arg711ProfsTer70	p.R711Pfs*70	ENST00000262320	NM_003502.3	711	cGC/c																																																																															
FANCA	2175	MSKCC	GRCh37	16	89851273	89851273	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143083764		P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	310	676	0	ENST00000389301.3:c.1459C>T	p.Arg487Trp	p.R487W	ENST00000389301	NM_000135.2	487	Cgg/Tgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597384	10597384	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	837	1071	0	ENST00000171111.5:c.1819G>C	p.Ala607Pro	p.A607P	ENST00000171111	NM_203500.1	607	Gct/Cct																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792557	33792557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	95	120	2	ENST00000498907.2:c.764G>T	p.Gly255Val	p.G255V	ENST00000498907	NM_004364.3	255	gGg/gTg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794949	242794949	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	373	1038	0	ENST00000334409.5:c.260G>T	p.Ser87Ile	p.S87I	ENST00000334409	NM_005018.2	87	aGc/aTc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017139	31017139	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	204	362	0	ENST00000375687.4:c.472-2A>T		p.X158_splice	ENST00000375687	NM_015338.5	158																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89498424	89498424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	271	422	0	ENST00000336596.2:c.2396G>T	p.Arg799Leu	p.R799L	ENST00000336596	NM_005233.5	799	cGc/cTc																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139826	55139826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	252	585	0	ENST00000257290.5:c.1487C>T	p.Thr496Ile	p.T496I	ENST00000257290	NM_006206.4	496	aCc/aTc																																																																															
TET2	54790	MSKCC	GRCh37	4	106196964	106196964	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	108	365	0	ENST00000380013.4:c.5297A>T	p.Tyr1766Phe	p.Y1766F	ENST00000380013	NM_001127208.2	1766	tAc/tTc																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143191856	143191857	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	148	694	2	ENST00000262992.4:c.574_575delinsTT	p.Gly192Leu	p.G192L	ENST00000262992	NM_001101669.1	192	GGg/TTg																																																																															
TERT	7015	MSKCC	GRCh37	5	1266634	1266634	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201159197		P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	135	664	0	ENST00000310581.5:c.2599G>T	p.Val867Leu	p.V867L	ENST00000310581	NM_198253.2	867	Gtg/Ttg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180040023	180040023	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	765	1015	0	ENST00000261937.6:c.3419C>A	p.Ala1140Asp	p.A1140D	ENST00000261937	NM_182925.4	1140	gCc/gAc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120885	94120885	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	616	524	0	ENST00000369303.4:c.166del	p.Glu56LysfsTer45	p.E56Kfs*45	ENST00000369303	NM_004440.3	56	Gaa/aa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729259	41729259	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	197	472	0	ENST00000242208.4:c.1270G>C	p.Gly424Arg	p.G424R	ENST00000242208	NM_002192.2	424	Ggg/Cgg																																																																															
RHEB	6009	MSKCC	GRCh37	7	151216590	151216590	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	58	262	0	ENST00000262187.5:c.8A>T	p.Gln3Leu	p.Q3L	ENST00000262187	NM_005614.3	3	cAg/cTg																																																																															
NBN	4683	MSKCC	GRCh37	8	90993117	90993117	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	113	418	0	ENST00000265433.3:c.325G>T	p.Glu109Ter	p.E109*	ENST00000265433	NM_002485.4	109	Gag/Tag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742150	145742150	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	316	579	0	ENST00000428558.2:c.355-2A>T		p.X119_splice	ENST00000428558	NM_004260.3	119																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139396918	139396918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	224	527	0	ENST00000277541.6:c.5190del	p.Pro1731ArgfsTer67	p.P1731Rfs*67	ENST00000277541	NM_017617.3	1730	ccG/cc																																																																															
AR	367	MSKCC	GRCh37	X	66931251	66931251	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	215	253	0	ENST00000374690.3:c.1893G>C	p.Lys631Asn	p.K631N	ENST00000374690	NM_000044.3	631	aaG/aaC																																																																															
ATRX	546	MSKCC	GRCh37	X	76937785	76937786	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	398	374	1	ENST00000373344.5:c.2962_2963delinsTT	p.Gly988Leu	p.G988L	ENST00000373344	NM_000489.3	988	GGa/TTa																																																																															
RB1	5925	MSKCC	GRCh37	13	48942689	48942695	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGTAA	AAAGTAA	GTT			P-0022113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	42	420	1	ENST00000267163.4:c.1076_1082delinsGTT	p.Lys359SerfsTer7	p.K359Sfs*7	ENST00000267163	NM_000321.2	359	aAAAGTAAc/aGTTc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961859	15961859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	100	542	0	ENST00000268712.3:c.5936C>T	p.Ala1979Val	p.A1979V	ENST00000268712	NM_006311.3	1979	gCc/gTc																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24129377	24129377	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	74	500	0	ENST00000263121.7:c.21C>A	p.Ser7Arg	p.S7R	ENST00000263121	NM_003073.3	7	agC/agA																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31401596	31401596	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	75	730	0	ENST00000344624.3:c.4068G>C	p.Arg1356Ser	p.R1356S	ENST00000344624		1356	agG/agC																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858284	27858284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	97	663	1	ENST00000359303.2:c.287C>T	p.Ala96Val	p.A96V	ENST00000359303	NM_003535.2	96	gCg/gTg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518409	8518409	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	38	254	0	ENST00000356435.5:c.982A>C	p.Thr328Pro	p.T328P	ENST00000356435		328	Act/Cct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	122	745	1	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0021971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1221	82	845	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278073	18278073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1294	170	867	5	ENST00000222254.8:c.1693C>T	p.Pro565Ser	p.P565S	ENST00000222254	NM_005027.3	565	Ccg/Tcg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245345	46245345	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	128	608	0	ENST00000334344.6:c.3439A>T	p.Asn1147Tyr	p.N1147Y	ENST00000334344	NM_152641.2	1147	Aac/Tac																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35873005	35873005	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0021971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	45	551	0	ENST00000216797.5:c.228-1G>A		p.X76_splice	ENST00000216797	NM_020529.2	76																																																																																
DNMT1	1786	MSKCC	GRCh37	19	10251518	10251518	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1225	146	870	0	ENST00000340748.4:c.3414G>T	p.Lys1138Asn	p.K1138N	ENST00000340748		1138	aaG/aaT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	68	649	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131915115	131915115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	76	615	0	ENST00000265335.6:c.472C>T	p.His158Tyr	p.H158Y	ENST00000265335		158	Cat/Tat																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981857	201981858	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	67	759	0	ENST00000359651.3:c.572dup	p.Gly192TrpfsTer4	p.G192Wfs*4	ENST00000359651		190	tcc/tCcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	133	754	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0022009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	70	382	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0022009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	24	439	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
CDC73	79577	MSKCC	GRCh37	1	193099338	193099338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	70	620	0	ENST00000367435.3:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000367435	NM_024529.4	91	cGa/cAa																																																																															
NF1	4763	MSKCC	GRCh37	17	29576010	29576010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	27	548	1	ENST00000358273.4:c.3983C>T	p.Pro1328Leu	p.P1328L	ENST00000358273	NM_001042492.2	1328	cCa/cTa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69028076	69028076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	76	844	1	ENST00000288368.4:c.3235G>A	p.Glu1079Lys	p.E1079K	ENST00000288368	NM_024870.2	1079	Gaa/Aaa																																																																															
SYK	6850	MSKCC	GRCh37	9	93624625	93624625	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0022009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	57	533	0	ENST00000375746.1:c.716A>G	p.Gln239Arg	p.Q239R	ENST00000375746	NM_001174167.1	239	cAg/cGg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	88	672	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056420	180056420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	69	564	0	ENST00000261937.6:c.824G>A	p.Arg275Gln	p.R275Q	ENST00000261937	NM_182925.4	275	cGg/cAg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39930388	39930388	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	186	488	0	ENST00000378444.4:c.3076T>G	p.Leu1026Val	p.L1026V	ENST00000378444	NM_001123385.1	1026	Ttg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	33	737	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
HGF	3082	MSKCC	GRCh37	7	81374401	81374401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	43	589	0	ENST00000222390.5:c.661G>A	p.Gly221Ser	p.G221S	ENST00000222390	NM_000601.4	221	Ggt/Agt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0022109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	519	713	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	343	660	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0022109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	140	289	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	85	596	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
ATM	472	MSKCC	GRCh37	11	108124713	108124713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	196	564	0	ENST00000278616.4:c.2071G>A	p.Asp691Asn	p.D691N	ENST00000278616	NM_000051.3	691	Gat/Aat																																																																															
DICER1	23405	MSKCC	GRCh37	14	95590951	95590951	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	21	359	0	ENST00000343455.3:c.958A>G	p.Lys320Glu	p.K320E	ENST00000343455	NM_177438.2	320	Aaa/Gaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	422	749	1	ENST00000269305.4:c.1010G>C	p.Arg337Pro	p.R337P	ENST00000269305	NM_001126112.2	337	cGc/cCc																																																																															
RB1	5925	MSKCC	GRCh37	13	48941720	48941720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	122	441	0	ENST00000267163.4:c.1030C>T	p.Gln344Ter	p.Q344*	ENST00000267163	NM_000321.2	344	Cag/Tag																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641487	23641487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	345	774	0	ENST00000261584.4:c.1988G>A	p.Arg663His	p.R663H	ENST00000261584	NM_024675.3	663	cGc/cAc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937905	36937905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	544	901	1	ENST00000361632.4:c.931C>A	p.Arg311Ser	p.R311S	ENST00000361632		311	Cgc/Agc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18650671	18650671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	107	458	0	ENST00000266497.5:c.2882G>T	p.Gly961Val	p.G961V	ENST00000266497		961	gGa/gTa																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779355	3779355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	439	767	0	ENST00000262367.5:c.5693G>A	p.Ser1898Asn	p.S1898N	ENST00000262367	NM_004380.2	1898	aGc/aAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788656	3788656	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	49	431	0	ENST00000262367.5:c.4298A>T	p.Tyr1433Phe	p.Y1433F	ENST00000262367	NM_004380.2	1433	tAt/tTt																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783617	50783617	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	75	485	0	ENST00000398568.2:c.8C>G	p.Ser3Ter	p.S3*	ENST00000398568	NM_001042412.1	3	tCa/tGa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78931452	78931452	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	457	719	1	ENST00000306801.3:c.3399G>T	p.Gln1133His	p.Q1133H	ENST00000306801	NM_020761.2	1133	caG/caT																																																																															
ALK	238	MSKCC	GRCh37	2	29436902	29436902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	64	617	3	ENST00000389048.3:c.3691C>T	p.Arg1231Trp	p.R1231W	ENST00000389048	NM_004304.4	1231	Cgg/Tgg																																																																															
ALK	238	MSKCC	GRCh37	2	29445228	29445228	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	499	767	0	ENST00000389048.3:c.3497T>A	p.Met1166Lys	p.M1166K	ENST00000389048	NM_004304.4	1166	aTg/aAg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212615430	212615430	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	244	504	0	ENST00000342788.4:c.557-1G>T		p.X186_splice	ENST00000342788	NM_005235.2	186																																																																																
STAG2	10735	MSKCC	GRCh37	X	123217400	123217400	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	193	249	0	ENST00000218089.9:c.3053+1G>A		p.X1018_splice	ENST00000218089	NM_001042749.1	1018																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178916947	178916947	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	105	501	0	ENST00000263967.3:c.334A>T	p.Ile112Phe	p.I112F	ENST00000263967	NM_006218.2	112	Atc/Ttc																																																																															
UPF1	5976	MSKCC	GRCh37	19	18961036	18961036	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	34	653	0	ENST00000262803.5:c.614T>A	p.Val205Glu	p.V205E	ENST00000262803	NM_002911.3	205	gTg/gAg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980413	1980413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	67	1056	2	ENST00000382891.5:c.3875C>T	p.Ser1292Leu	p.S1292L	ENST00000382891	NM_133335.3	1292	tCg/tTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	697	636	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0022375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	191	308	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0022375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	243	631	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225923	2225923	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	295	761	0	ENST00000326181.6:c.1715T>C	p.Ile572Thr	p.I572T	ENST00000326181	NM_032271.2	572	aTt/aCt																																																																															
TET2	54790	MSKCC	GRCh37	4	106196522	106196522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	222	392	0	ENST00000380013.4:c.4855C>T	p.Pro1619Ser	p.P1619S	ENST00000380013	NM_001127208.2	1619	Cct/Tct																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949630	151949630	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0022375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	254	417	0	ENST00000262189.6:c.1469+1G>A		p.X490_splice	ENST00000262189	NM_170606.2	490																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27101300	27101300	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	40	672	0	ENST00000324856.7:c.4582C>T	p.Arg1528Ter	p.R1528*	ENST00000324856	NM_006015.4	1528	Cga/Tga																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127399	55127399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	34	701	0	ENST00000257290.5:c.187G>A	p.Glu63Lys	p.E63K	ENST00000257290	NM_006206.4	63	Gaa/Aaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	155	693	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0022152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	45	386	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	44	447	0	ENST00000263967.3:c.3129G>C	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atC																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368208	45368208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	71	450	0	ENST00000262160.6:c.1394G>A	p.Ser465Asn	p.S465N	ENST00000262160	NM_005901.5	465	aGc/aAc																																																																															
APC	324	MSKCC	GRCh37	5	112176027	112176027	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	40	344	0	ENST00000257430.4:c.4737del	p.Ile1580PhefsTer70	p.I1580Ffs*70	ENST00000257430	NM_000038.5	1579	aTt/at																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374882	45374882	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs776149698		P-0022152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	59	752	0	ENST00000262160.6:c.961C>T	p.Arg321Ter	p.R321*	ENST00000262160	NM_005901.5	321	Cga/Tga																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710561	114710581	+	inframe_deletion	In_Frame_Del	DEL	GACGAACTGATTTCCTTCAAA	GACGAACTGATTTCCTTCAAA	-			P-0022152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	64	481	0	ENST00000543371.1:c.51_71del	p.Leu18_Glu24del	p.L18_E24del	ENST00000543371	NM_001198531.1	16	GACGAACTGATTTCCTTCAAA/-																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49416362	49416371	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CCAGCTCATA	CCAGCTCATA	-			P-0022152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	138	477	6	ENST00000301067.7:c.16338+2_16338+11del		p.X5446_splice	ENST00000301067	NM_003482.3	5446																																																																																
SMAD3	4088	MSKCC	GRCh37	15	67473735	67473735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	172	703	2	ENST00000327367.4:c.815G>A	p.Gly272Glu	p.G272E	ENST00000327367	NM_005902.3	272	gGg/gAg																																																																															
IDH1	3417	MSKCC	GRCh37	2	209106766	209106766	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	86	708	0	ENST00000345146.2:c.802G>T	p.Ala268Ser	p.A268S	ENST00000345146	NM_005896.2	268	Gcc/Tcc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161750	56161750	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	88	622	0	ENST00000399503.3:c.1247C>A	p.Ser416Ter	p.S416*	ENST00000399503	NM_005921.1	416	tCa/tAa																																																																															
APC	324	MSKCC	GRCh37	5	112174228	112174229	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAAC			P-0022152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	47	533	0	ENST00000257430.4:c.2938_2941dup	p.Pro981GlnfsTer5	p.P981Qfs*5	ENST00000257430	NM_000038.5	979	-/AAAC																																																																															
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021454-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			717	564	1097	0	ENST00000269305.4:c.403delT	p.Cys135AlafsTer35	p.C135Afs*35	ENST00000269305	NM_001126112.2	135	Tgc/gc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467800	66467800	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021454-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			470	82	432	0	ENST00000273854.3:c.469G>C	p.Glu157Gln	p.E157Q	ENST00000273854	NM_004439.5	157	Gag/Cag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16247477	16247477	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0021454-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			209	118	243	0	ENST00000375759.3:c.1748A>C	p.Lys583Thr	p.K583T	ENST00000375759	NM_015001.2	583	aAg/aCg																																																																															
EP300	2033	MSKCC	GRCh37	22	41513595	41513595	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021454-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			532	228	719	0	ENST00000263253.7:c.499A>G	p.Thr167Ala	p.T167A	ENST00000263253	NM_001429.3	167	Aca/Gca																																																																															
EP300	2033	MSKCC	GRCh37	22	41521995	41521995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021454-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			788	106	700	0	ENST00000263253.7:c.857C>T	p.Pro286Leu	p.P286L	ENST00000263253	NM_001429.3	286	cCa/cTa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89176385	89176385	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021454-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			338	57	552	0	ENST00000336596.2:c.115C>G	p.Gln39Glu	p.Q39E	ENST00000336596	NM_005233.5	39	Caa/Gaa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201668	66201668	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021454-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			584	115	704	0	ENST00000273854.3:c.2834T>A	p.Leu945Gln	p.L945Q	ENST00000273854	NM_004439.5	945	cTg/cAg																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978595	70978595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021454-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			817	366	857	0	ENST00000276594.2:c.1058G>A	p.Cys353Tyr	p.C353Y	ENST00000276594	NM_024504.3	353	tGc/tAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	126	550	2	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67479811	67479811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	149	632	0	ENST00000327367.4:c.1118G>A	p.Arg373His	p.R373H	ENST00000327367	NM_005902.3	373	cGc/cAc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0022243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	136	629	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0022243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	145	652	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348280	89348280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	266	1008	1	ENST00000301030.4:c.4670C>T	p.Pro1557Leu	p.P1557L	ENST00000301030	NM_001256183.1	1557	cCa/cTa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174497	11174497	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	173	714	0	ENST00000361445.4:c.7178A>G	p.Asp2393Gly	p.D2393G	ENST00000361445	NM_004958.3	2393	gAt/gGt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43701201	43701202	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0022243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	143	721	0	ENST00000382044.4:c.5493_5494del	p.His1833CysfsTer5	p.H1833Cfs*5	ENST00000382044	NM_001141980.1	1831	gtGTct/gtct																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647845	3647845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	248	786	0	ENST00000294008.3:c.1319C>T	p.Ala440Val	p.A440V	ENST00000294008	NM_032444.2	440	gCg/gTg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119955	70119955	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	104	432	1	ENST00000245479.2:c.957del	p.Tyr319Ter	p.Y319*	ENST00000245479	NM_000346.3	319	taC/ta																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375001	45375001	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	283	587	0	ENST00000262160.6:c.842A>T	p.Glu281Val	p.E281V	ENST00000262160	NM_005901.5	281	gAa/gTa																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45858047	45858047	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142568756		P-0022243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	221	802	0	ENST00000391945.4:c.1606G>A	p.Val536Met	p.V536M	ENST00000391945	NM_000400.3	536	Gtg/Atg																																																																															
APC	324	MSKCC	GRCh37	5	112175537	112175541	+	frameshift_variant	Frame_Shift_Del	DEL	GGCAT	GGCAT	ATTA			P-0022243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	96	414	3	ENST00000257430.4:c.4246_4250delinsATTA	p.Gly1416IlefsTer3	p.G1416Ifs*3	ENST00000257430	NM_000038.5	1416	GGCATt/ATTAt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115818	8115834	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCTCGTTTAACCCGG	CAGCTCGTTTAACCCGG	-			P-0022175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	225	549	0	ENST00000346208.3:c.1165_1181del	p.Ser389ArgfsTer112	p.S389Rfs*112	ENST00000346208		388	aaCAGCTCGTTTAACCCGGcc/aacc																																																																															
CIC	23152	MSKCC	GRCh37	19	42798408	42798408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	504	668	0	ENST00000575354.2:c.4279C>T	p.Pro1427Ser	p.P1427S	ENST00000575354	NM_015125.3	1427	Ccc/Tcc																																																																															
AURKA	6790	MSKCC	GRCh37	20	54958118	54958118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	134	578	0	ENST00000312783.6:c.489del	p.Leu164TyrfsTer19	p.L164Yfs*19	ENST00000312783	NM_198436.1	163	gtG/gt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0021985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	526	536	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101609	27101609	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	204	591	3	ENST00000324856.7:c.4891C>T	p.Gln1631Ter	p.Q1631*	ENST00000324856	NM_006015.4	1631	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	129	251	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11958231	11958231	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	144	318	0	ENST00000353533.5:c.144del	p.Phe48LeufsTer14	p.F48Lfs*14	ENST00000353533	NM_003010.3	47	aaT/aa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3641202	3641202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	378	723	0	ENST00000294008.3:c.2437G>A	p.Glu813Lys	p.E813K	ENST00000294008	NM_032444.2	813	Gag/Aag																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349241	89349241	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1341	197	735	0	ENST00000301030.4:c.3709A>G	p.Lys1237Glu	p.K1237E	ENST00000301030	NM_001256183.1	1237	Aag/Gag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212652864	212652864	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	13	345	0	ENST00000342788.4:c.442T>A	p.Tyr148Asn	p.Y148N	ENST00000342788	NM_005235.2	148	Tat/Aat																																																																															
DCUN1D1	54165	MSKCC	GRCh37	3	182679046	182679046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	64	419	0	ENST00000292782.4:c.488A>G	p.Asn163Ser	p.N163S	ENST00000292782	NM_020640.2	163	aAt/aGt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177504	56177504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	64	367	0	ENST00000399503.3:c.2477T>C	p.Met826Thr	p.M826T	ENST00000399503	NM_005921.1	826	aTg/aCg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180030329	180030329	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142322370		P-0021985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	356	496	1	ENST00000261937.6:c.3955C>T	p.Arg1319Trp	p.R1319W	ENST00000261937	NM_182925.4	1319	Cgg/Tgg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412733	63412733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	190	476	1	ENST00000330258.3:c.434C>A	p.Thr145Lys	p.T145K	ENST00000330258	NM_152424.3	145	aCa/aAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	456	732	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0022095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	516	654	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0022095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	107	223	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
APC	324	MSKCC	GRCh37	5	112151263	112151263	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	275	406	1	ENST00000257430.4:c.907del	p.Arg303GlyfsTer2	p.R303Gfs*2	ENST00000257430	NM_000038.5	302	cgA/cg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023150	27023150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	14	45	0	ENST00000324856.7:c.256G>A	p.Gly86Ser	p.G86S	ENST00000324856	NM_006015.4	86	Ggc/Agc																																																																															
MPL	4352	MSKCC	GRCh37	1	43812486	43812486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	96	448	0	ENST00000372470.3:c.1189C>T	p.His397Tyr	p.H397Y	ENST00000372470	NM_005373.2	397	Cac/Tac																																																																															
NUF2	83540	MSKCC	GRCh37	1	163297298	163297298	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	74	688	0	ENST00000271452.3:c.144C>G	p.Ile48Met	p.I48M	ENST00000271452	NM_145697.2	48	atC/atG																																																																															
BIRC3	330	MSKCC	GRCh37	11	102201814	102201814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	58	596	0	ENST00000263464.3:c.1166G>A	p.Gly389Asp	p.G389D	ENST00000263464	NM_001165.4	389	gGc/gAc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118363901	118363901	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	99	511	0	ENST00000534358.1:c.5134G>C	p.Glu1712Gln	p.E1712Q	ENST00000534358	NM_005933.3	1712	Gaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7576850	7576861	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TACCTGAAGGGT	TACCTGAAGGGT	-			P-0022007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	296	624	2	ENST00000269305.4:c.985_993+3del		p.X329_splice	ENST00000269305	NM_001126112.2	329																																																																																
EIF4A2	1974	MSKCC	GRCh37	3	186505003	186505003	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	32	400	0	ENST00000323963.5:c.859G>C	p.Asp287His	p.D287H	ENST00000323963		287	Gac/Cac																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858480	27858480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	72	338	0	ENST00000359303.2:c.91C>A	p.Pro31Thr	p.P31T	ENST00000359303	NM_003535.2	31	Cca/Aca																																																																															
PAX5	5079	MSKCC	GRCh37	9	36923385	36923385	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	81	679	0	ENST00000358127.4:c.877G>T	p.Val293Leu	p.V293L	ENST00000358127	NM_001280556.1	293	Gtg/Ttg																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300953	137300968	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATGAAGCGGGAAGGTA	ATGAAGCGGGAAGGTA	CATG			P-0022007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	87	485	3	ENST00000481739.1:c.598_610+3delinsCATG		p.X200_splice	ENST00000481739	NM_002957.4	200																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48593401	48593409	+	inframe_deletion	In_Frame_Del	DEL	CAAAGGTGT	CAAAGGTGT	-			P-0018476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			338	48	520	0	ENST00000342988.3:c.1152_1160del	p.Lys385_Val387del	p.K385_V387del	ENST00000342988	NM_005359.5	384	ggCAAAGGTGTg/ggg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	95	567	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057936	27057937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	62	687	0	ENST00000324856.7:c.1650dupC	p.Tyr551LeufsTer72	p.Y551Lfs*72	ENST00000324856	NM_006015.4	548	-/C																																																																															
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	19	692	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0022031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	311	560	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0022031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	124	519	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
CBFB	865	MSKCC	GRCh37	16	67070608	67070608	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	89	396	0	ENST00000412916.2:c.232C>T	p.Arg78Ter	p.R78*	ENST00000412916		78	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0022378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	370	604	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0022378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	384	707	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	118	406	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18446858	18446858	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	60	376	0	ENST00000266497.5:c.943A>G	p.Ile315Val	p.I315V	ENST00000266497		315	Att/Gtt																																																																															
MGA	23269	MSKCC	GRCh37	15	42003024	42003057	+	frameshift_variant	Frame_Shift_Del	DEL	TGTACCAGCTTCCCACTAAGAGTACCAGTTATGT	TGTACCAGCTTCCCACTAAGAGTACCAGTTATGT	-			P-0022378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	405	791	1	ENST00000219905.7:c.2561_2594del	p.Val854AspfsTer8	p.V854Dfs*8	ENST00000219905	NM_001164273.1	854	gTGTACCAGCTTCCCACTAAGAGTACCAGTTATGTa/ga																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492812	56492812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	196	606	0	ENST00000407977.2:c.127G>A	p.Glu43Lys	p.E43K	ENST00000407977		43	Gaa/Aaa																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216416	2216416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1129	223	689	0	ENST00000398665.3:c.2060C>T	p.Ala687Val	p.A687V	ENST00000398665	NM_032482.2	687	gCc/gTc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010433	48010433	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	394	656	0	ENST00000234420.5:c.61A>G	p.Asn21Asp	p.N21D	ENST00000234420	NM_000179.2	21	Aac/Gac																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204732741	204732741	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	177	583	0	ENST00000302823.3:c.76T>C	p.Phe26Leu	p.F26L	ENST00000302823	NM_005214.4	26	Ttt/Ctt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538994	187538994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	305	623	0	ENST00000441802.2:c.8746C>T	p.Pro2916Ser	p.P2916S	ENST00000441802	NM_005245.3	2916	Cca/Tca																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38282109	38282109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	479	990	0	ENST00000425967.3:c.947C>T	p.Pro316Leu	p.P316L	ENST00000425967	NM_001174067.1	316	cCg/cTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038867	47038870	+	frameshift_variant	Frame_Shift_Del	DEL	GAGC	GAGC	-			P-0022378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	242	907	0	ENST00000329236.7:c.643_646del	p.Glu215GlnfsTer15	p.E215Qfs*15	ENST00000329236	NM_001204466.1	215	GAGCca/ca																																																																															
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765123636		P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	112	258	0	ENST00000369902.3:c.71dup	p.Ala25GlyfsTer23	p.A25Gfs*23	ENST00000369902	NM_016169.3	22	gcc/gCcc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	129	638	7	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	75	366	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098455	11098455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	197	516	1	ENST00000344626.4:c.973G>A	p.Val325Met	p.V325M	ENST00000344626	NM_003072.3	325	Gtg/Atg																																																																															
ATM	472	MSKCC	GRCh37	11	108196880	108196880	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	608	491	0	ENST00000278616.4:c.6908del	p.Lys2303ArgfsTer7	p.K2303Rfs*7	ENST00000278616	NM_000051.3	2301	gcA/gc																																																																															
ASXL1	171023	MSKCC	GRCh37	20	30946592	30946594	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs752094508		P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	175	352	0	ENST00000375687.4:c.25_27del	p.Lys9del	p.K9del	ENST00000375687	NM_015338.5	5	cAGAag/cag																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936349	49936349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	216	685	0	ENST00000296474.3:c.1499G>A	p.Arg500Gln	p.R500Q	ENST00000296474	NM_002447.2	500	cGg/cAg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40457680	40457680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	155	679	1	ENST00000345506.4:c.1433C>T	p.Ala478Val	p.A478V	ENST00000345506	NM_003152.3	478	gCc/gTc																																																																															
RARA	5914	MSKCC	GRCh37	17	38512402	38512402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	121	678	4	ENST00000254066.5:c.1319delC	p.Pro440ArgfsTer203	p.P440Rfs*203	ENST00000254066	NM_000964.3	438	gCc/gc																																																																															
IL10	3586	MSKCC	GRCh37	1	206945647	206945647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	204	576	0	ENST00000423557.1:c.134G>A	p.Arg45Gln	p.R45Q	ENST00000423557	NM_000572.2	45	cGa/cAa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78897444	78897444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	110	824	1	ENST00000306801.3:c.2779C>T	p.Arg927Trp	p.R927W	ENST00000306801	NM_020761.2	927	Cgg/Tgg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16258944	16258944	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	153	798	1	ENST00000375759.3:c.6215delA	p.Asn2072ThrfsTer14	p.N2072Tfs*14	ENST00000375759	NM_015001.2	2070	gAa/ga																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429367	78429367	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	159	591	0	ENST00000370768.2:c.1075C>T	p.Arg359Ter	p.R359*	ENST00000370768	NM_003902.3	359	Cga/Tga																																																																															
AKT1	207	MSKCC	GRCh37	14	105239881	105239881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	285	666	0	ENST00000349310.3:c.739G>A	p.Glu247Lys	p.E247K	ENST00000349310	NM_001014432.1	247	Gag/Aag																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43767848	43767848	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	218	633	0	ENST00000382044.4:c.1000T>C	p.Cys334Arg	p.C334R	ENST00000382044	NM_001141980.1	334	Tgt/Cgt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640766	3640766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	114	626	0	ENST00000294008.3:c.2873G>A	p.Cys958Tyr	p.C958Y	ENST00000294008	NM_032444.2	958	tGc/tAc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789651	3789651	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	109	617	0	ENST00000262367.5:c.4208A>G	p.Asp1403Gly	p.D1403G	ENST00000262367	NM_004380.2	1403	gAc/gGc																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16024503	16024503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	111	509	0	ENST00000268712.3:c.1715G>A	p.Arg572Gln	p.R572Q	ENST00000268712	NM_006311.3	572	cGa/cAa																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870471	40870471	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	104	427	1	ENST00000428826.2:c.931+1G>A		p.X311_splice	ENST00000428826		311																																																																																
DOT1L	84444	MSKCC	GRCh37	19	2210457	2210457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	234	838	0	ENST00000398665.3:c.1064C>T	p.Thr355Met	p.T355M	ENST00000398665	NM_032482.2	355	aCg/aTg																																																																															
CARM1	10498	MSKCC	GRCh37	19	10982474	10982474	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	33	115	0	ENST00000327064.4:c.99del	p.Gly34AlafsTer91	p.G34Afs*91	ENST00000327064	NM_199141.1	32	ttC/tt																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257162	19257163	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	68	675	0	ENST00000162023.5:c.800dup	p.Gly268TrpfsTer17	p.G268Wfs*17	ENST00000162023		267	cct/ccCt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36218825	36218825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	142	858	1	ENST00000222270.7:c.4436C>T	p.Ser1479Leu	p.S1479L	ENST00000222270	NM_014727.1	1479	tCg/tTg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703577	47703577	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	267	694	0	ENST00000233146.2:c.2077T>C	p.Cys693Arg	p.C693R	ENST00000233146	NM_000251.2	693	Tgt/Cgt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162704	47162704	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142723093		P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	83	576	2	ENST00000409792.3:c.3422C>T	p.Pro1141Leu	p.P1141L	ENST00000409792	NM_014159.6	1141	cCg/cTg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940126	49940126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	89	666	2	ENST00000296474.3:c.917G>A	p.Arg306His	p.R306H	ENST00000296474	NM_002447.2	306	cGc/cAc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119631607	119631607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	100	492	1	ENST00000316626.5:c.659G>A	p.Arg220Gln	p.R220Q	ENST00000316626		220	cGg/cAg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38958587	38958587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	124	329	1	ENST00000357387.3:c.2378C>T	p.Ala793Val	p.A793V	ENST00000357387	NM_152756.3	793	gCg/gTg																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513317	149513317	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147568171		P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	97	487	0	ENST00000261799.4:c.766C>T	p.Arg256Trp	p.R256W	ENST00000261799	NM_002609.3	256	Cgg/Tgg																																																																															
IRF4	3662	MSKCC	GRCh37	6	394915	394915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	149	498	1	ENST00000380956.4:c.311G>T	p.Ser104Ile	p.S104I	ENST00000380956	NM_001195286.1	104	aGc/aTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273120	55273120	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	138	675	0	ENST00000275493.2:c.3443A>G	p.Asn1148Ser	p.N1148S	ENST00000275493	NM_005228.3	1148	aAc/aGc																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500946	8500946	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	77	490	0	ENST00000356435.5:c.1936T>C	p.Ser646Pro	p.S646P	ENST00000356435		646	Tcc/Ccc																																																																															
MED12	9968	MSKCC	GRCh37	X	70357094	70357094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	203	480	0	ENST00000374080.3:c.5609C>T	p.Thr1870Ile	p.T1870I	ENST00000374080		1870	aCc/aTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0022319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	24	772	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575132	48575132	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	28	477	0	ENST00000342988.3:c.326T>G	p.Leu109Arg	p.L109R	ENST00000342988	NM_005359.5	109	cTa/cGa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151877837	151877852	+	frameshift_variant	Frame_Shift_Del	DEL	TATTCTGTGTATCAGT	TATTCTGTGTATCAGT	-			P-0022319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	37	424	0	ENST00000262189.6:c.7093_7108del	p.Thr2365LeufsTer2	p.T2365Lfs*2	ENST00000262189	NM_170606.2	2365	ACTGATACACAGAATAct/ct																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0022137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	169	667	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	90	389	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100133	30100133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	172	972	0	ENST00000331968.5:c.1487C>T	p.Thr496Met	p.T496M	ENST00000331968	NM_002742.2	496	aCg/aTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446455	49446455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	103	657	0	ENST00000301067.7:c.1150G>C	p.Glu384Gln	p.E384Q	ENST00000301067	NM_003482.3	384	Gag/Cag																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861162	57861162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	258	795	0	ENST00000228682.2:c.959C>T	p.Thr320Met	p.T320M	ENST00000228682	NM_005269.2	320	aCg/aTg																																																																															
SETD8	387893	MSKCC	GRCh37	12	123880917	123880917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	197	600	0	ENST00000330479.4:c.535C>T	p.Arg179Cys	p.R179C	ENST00000330479	NM_020382.3	179	Cgc/Tgc																																																																															
RAD51	5888	MSKCC	GRCh37	15	41001278	41001287	+	frameshift_variant	Frame_Shift_Del	DEL	GACCCAGATC	GACCCAGATC	-			P-0022137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	126	849	0	ENST00000267868.3:c.399_408del	p.Lys133AsnfsTer5	p.K133Nfs*5	ENST00000267868	NM_002875.4	133	aaGACCCAGATC/aa																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082206	16082206	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	186	1236	1	ENST00000281043.3:c.20C>A	p.Ser7Tyr	p.S7Y	ENST00000281043	NM_005378.4	7	tCc/tAc																																																																															
KDR	3791	MSKCC	GRCh37	4	55976680	55976680	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	274	916	0	ENST00000263923.4:c.1145T>C	p.Val382Ala	p.V382A	ENST00000263923	NM_002253.2	382	gTa/gCa																																																																															
APC	324	MSKCC	GRCh37	5	112170770	112170770	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	288	941	0	ENST00000257430.4:c.1866C>A	p.Tyr622Ter	p.Y622*	ENST00000257430	NM_000038.5	622	taC/taA																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0021994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	12	561	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
FLT4	2324	MSKCC	GRCh37	5	180041110	180041110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	167	1389	2	ENST00000261937.6:c.3289G>A	p.Val1097Met	p.V1097M	ENST00000261937	NM_182925.4	1097	Gtg/Atg																																																																															
CBL	867	MSKCC	GRCh37	11	119167662	119167662	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	36	617	1	ENST00000264033.4:c.2071C>T	p.Gln691Ter	p.Q691*	ENST00000264033	NM_005188.3	691	Caa/Taa																																																																															
CCNE1	898	MSKCC	GRCh37	19	30308047	30308064	+	inframe_deletion	In_Frame_Del	DEL	TGGGACAATAATGCAGTC	TGGGACAATAATGCAGTC	-			P-0022086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	61	567	0	ENST00000262643.3:c.186_203del	p.Trp62_Val67del	p.W62_V67del	ENST00000262643	NM_001238.2	62	TGGGACAATAATGCAGTC/-																																																																															
PMS2	5395	MSKCC	GRCh37	7	6043687	6043687	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0022086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	95	492	0	ENST00000265849.7:c.166C>A	p.Leu56Ile	p.L56I	ENST00000265849	NM_000535.5	56	Cta/Ata																																																																															
TCEB1	6921	MSKCC	GRCh37	8	74868172	74868172	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	13	145	0	ENST00000284811.8:c.122C>G	p.Thr41Arg	p.T41R	ENST00000284811		41	aCg/aGg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	205	646	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794494	242794494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	115	835	0	ENST00000334409.5:c.448G>C	p.Glu150Gln	p.E150Q	ENST00000334409	NM_005018.2	150	Gaa/Caa																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274121	10274121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	35	720	0	ENST00000330684.3:c.148G>A	p.Glu50Lys	p.E50K	ENST00000330684	NM_001134407.1	50	Gaa/Aaa																																																																															
MTOR	2475	MSKCC	GRCh37	1	11181402	11181402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	120	835	0	ENST00000361445.4:c.6834G>C	p.Leu2278Phe	p.L2278F	ENST00000361445	NM_004958.3	2278	ttG/ttC																																																																															
JAK1	3716	MSKCC	GRCh37	1	65307165	65307165	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	35	541	0	ENST00000342505.4:c.2523C>G	p.Ile841Met	p.I841M	ENST00000342505	NM_002227.2	841	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578445	7578450	+	inframe_deletion	In_Frame_Del	DEL	ATGGCC	ATGGCC	-			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	137	843	0	ENST00000269305.4:c.480_485del	p.Met160_Ala161del	p.M160_A161del	ENST00000269305	NM_001126112.2	160	atGGCCATc/atc																																																																															
AXL	558	MSKCC	GRCh37	19	41762481	41762481	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	35	582	0	ENST00000301178.4:c.2161C>G	p.Leu721Val	p.L721V	ENST00000301178	NM_021913.4	721	Cta/Gta																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027227	48027227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	28	538	0	ENST00000234420.5:c.2105C>T	p.Ser702Leu	p.S702L	ENST00000234420	NM_000179.2	702	tCa/tTa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921404	178921404	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	44	750	0	ENST00000263967.3:c.886C>G	p.Gln296Glu	p.Q296E	ENST00000263967	NM_006218.2	296	Caa/Gaa																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562347	176562347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	49	770	0	ENST00000439151.2:c.243G>A	p.Met81Ile	p.M81I	ENST00000439151	NM_022455.4	81	atG/atA																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562849	176562849	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	46	663	0	ENST00000439151.2:c.745G>T	p.Glu249Ter	p.E249*	ENST00000439151	NM_022455.4	249	Gaa/Taa																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552870	106552870	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	1353	844	0	ENST00000369096.4:c.835G>C	p.Asp279His	p.D279H	ENST00000369096	NM_001198.3	279	Gac/Cac																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129319	152129319	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	53	634	0	ENST00000206249.3:c.272C>G	p.Ser91Cys	p.S91C	ENST00000206249	NM_000125.3	91	tCc/tGc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913151	39913151	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	22	429	0	ENST00000378444.4:c.4964C>G	p.Ser1655Cys	p.S1655C	ENST00000378444	NM_001123385.1	1655	tCt/tGt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922945	39922945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	73	814	0	ENST00000378444.4:c.3763G>A	p.Glu1255Lys	p.E1255K	ENST00000378444	NM_001123385.1	1255	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0022020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	802	830	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
RB1	5925	MSKCC	GRCh37	13	48939046	48939052	+	frameshift_variant	Frame_Shift_Del	DEL	TCAAAAA	TCAAAAA	-			P-0022020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	164	531	2	ENST00000267163.4:c.879_885del	p.Lys294LeufsTer5	p.K294Lfs*5	ENST00000267163	NM_000321.2	293	tTCAAAAAt/tt																																																																															
EP300	2033	MSKCC	GRCh37	22	41556657	41556657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	284	787	1	ENST00000263253.7:c.3602G>A	p.Cys1201Tyr	p.C1201Y	ENST00000263253	NM_001429.3	1201	tGt/tAt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141595361	141595361	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	151	900	0	ENST00000220592.5:c.72G>C	p.Lys24Asn	p.K24N	ENST00000220592	NM_012154.3	24	aaG/aaC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	57	837	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	83	794	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
CDH1	999	MSKCC	GRCh37	16	68842623	68842623	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	104	673	0	ENST00000261769.5:c.560del	p.Lys187ArgfsTer28	p.K187Rfs*28	ENST00000261769	NM_004360.3	187	Aag/ag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426693	212426693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	76	568	0	ENST00000342788.4:c.2422G>A	p.Val808Ile	p.V808I	ENST00000342788	NM_005235.2	808	Gtc/Atc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38947443	38947443	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	31	412	0	ENST00000357387.3:c.4237G>T	p.Val1413Leu	p.V1413L	ENST00000357387	NM_152756.3	1413	Gtg/Ttg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0022061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	566	582	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724799	43724799	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	619	650	0	ENST00000382044.4:c.3268C>T	p.Gln1090Ter	p.Q1090*	ENST00000382044	NM_001141980.1	1090	Cag/Tag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15967400	15967400	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	260	486	1	ENST00000268712.3:c.5203G>T	p.Asp1735Tyr	p.D1735Y	ENST00000268712	NM_006311.3	1735	Gac/Tac																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63532630	63532630	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199719878		P-0022061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	72	660	2	ENST00000307078.5:c.1949G>A	p.Arg650His	p.R650H	ENST00000307078	NM_004655.3	650	cGc/cAc																																																																															
APC	324	MSKCC	GRCh37	5	112173723	112173726	+	frameshift_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0022061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	358	375	0	ENST00000257430.4:c.2434_2437del	p.Asp812IlefsTer7	p.D812Ifs*7	ENST00000257430	NM_000038.5	811	tCAGAc/tc																																																																															
APC	324	MSKCC	GRCh37	5	112175399	112175399	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0022061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	193	326	0	ENST00000257430.4:c.4108A>T	p.Lys1370Ter	p.K1370*	ENST00000257430	NM_000038.5	1370	Aaa/Taa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0022027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	571	667	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	139	521	0	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576120	88576120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147160868		P-0022027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	201	761	2	ENST00000360948.2:c.1553G>A	p.Arg518His	p.R518H	ENST00000360948	NM_001012338.2	518	cGt/cAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0022027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	243	761	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																																
FLT4	2324	MSKCC	GRCh37	5	180053141	180053141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	70	608	0	ENST00000261937.6:c.1228C>T	p.Arg410Cys	p.R410C	ENST00000261937	NM_182925.4	410	Cgc/Tgc																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70980712	70980712	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0022027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	105	628	0	ENST00000276594.2:c.754+2T>C		p.X252_splice	ENST00000276594	NM_024504.3	252																																																																																
MYC	4609	MSKCC	GRCh37	8	128750776	128750776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	85	534	0	ENST00000377970.2:c.313G>A	p.Gly105Ser	p.G105S	ENST00000377970	NM_002467.4	105	Ggc/Agc																																																																															
RET	5979	MSKCC	GRCh37	10	43601926	43601926	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	433	797	0	ENST00000355710.3:c.970T>A	p.Trp324Arg	p.W324R	ENST00000355710	NM_020975.4	324	Tgg/Agg																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125513686	125513686	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0022033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	52	420	0	ENST00000428830.2:c.815-1G>T		p.X272_splice	ENST00000428830	NM_001114121.2	272																																																																																
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0022033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	381	787	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1265	475	806	0	ENST00000269305.4:c.481del	p.Ala161ProfsTer9	p.A161Pfs*9	ENST00000269305	NM_001126112.2	161	Gcc/cc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	69	567	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86633847	86633847	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	29	518	0	ENST00000274376.6:c.956G>A	p.Trp319Ter	p.W319*	ENST00000274376	NM_002890.2	319	tGg/tAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76938965	76938965	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	53	808	0	ENST00000373344.5:c.1783C>A	p.Leu595Ile	p.L595I	ENST00000373344	NM_000489.3	595	Ctt/Att																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	22	447	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
CIC	23152	MSKCC	GRCh37	19	42796352	42796352	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	39	611	0	ENST00000575354.2:c.3001T>A	p.Ser1001Thr	p.S1001T	ENST00000575354	NM_015125.3	1001	Tcc/Acc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	211	545	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0022069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	67	767	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	151	953	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	69	806	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200151	128200151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	151	928	2	ENST00000341105.2:c.1154C>T	p.Pro385Leu	p.P385L	ENST00000341105	NM_032638.4	385	cCa/cTa																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198265007	198265007	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	102	608	0	ENST00000335508.6:c.2870G>T	p.Arg957Leu	p.R957L	ENST00000335508	NM_012433.2	957	cGa/cTa																																																																															
MAX	4149	MSKCC	GRCh37	14	65560451	65560451	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	143	649	1	ENST00000358664.4:c.146C>A	p.Ser49Ter	p.S49*	ENST00000358664	NM_002382.4	49	tCa/tAa																																																																															
MGA	23269	MSKCC	GRCh37	15	42058313	42058313	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	70	548	0	ENST00000219905.7:c.8033G>T	p.Ser2678Ile	p.S2678I	ENST00000219905	NM_001164273.1	2678	aGc/aTc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23647077	23647077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	194	1155	0	ENST00000261584.4:c.790C>T	p.His264Tyr	p.H264Y	ENST00000261584	NM_024675.3	264	Cac/Tac																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33430565	33430566	+	splice_acceptor_variant,intron_variant	Splice_Site	DNP	TG	TG	AT			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	103	740	2	ENST00000335858.7:c.241-3_241-2delinsAT		p.X81_splice	ENST00000335858	NM_133629.2	81																																																																																
PIK3C3	5289	MSKCC	GRCh37	18	39570515	39570515	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	29	511	0	ENST00000262039.4:c.711A>T	p.Glu237Asp	p.E237D	ENST00000262039	NM_002647.2	237	gaA/gaT																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198264996	198264996	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	100	604	0	ENST00000335508.6:c.2881G>T	p.Val961Phe	p.V961F	ENST00000335508	NM_012433.2	961	Gtc/Ttc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198265019	198265019	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	108	628	0	ENST00000335508.6:c.2858A>C	p.Asp953Ala	p.D953A	ENST00000335508	NM_012433.2	953	gAc/gCc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179414	56179414	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	122	529	0	ENST00000399503.3:c.3727T>C	p.Trp1243Arg	p.W1243R	ENST00000399503	NM_005921.1	1243	Tgg/Cgg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044499	47044499	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	144	967	0	ENST00000329236.7:c.1762A>T	p.Lys588Ter	p.K588*	ENST00000329236	NM_001204466.1	588	Aaa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501191		P-0021975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	204	654	1	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107180	27107180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	69	602	0	ENST00000324856.7:c.6791C>T	p.Ser2264Leu	p.S2264L	ENST00000324856	NM_006015.4	2264	tCa/tTa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845900	156845900	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	108	713	0	ENST00000524377.1:c.1530C>G	p.Ile510Met	p.I510M	ENST00000524377	NM_002529.3	510	atC/atG																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572084	64572084	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	63	575	1	ENST00000337652.1:c.1570C>A	p.Pro524Thr	p.P524T	ENST00000337652	NM_130803.2	524	Cct/Act																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573799	64573799	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	72	685	0	ENST00000337652.1:c.969C>G	p.Ile323Met	p.I323M	ENST00000337652	NM_130803.2	323	atC/atG																																																																															
KDM5A	5927	MSKCC	GRCh37	12	438185	438185	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	88	377	0	ENST00000399788.2:c.1784G>C	p.Gly595Ala	p.G595A	ENST00000399788	NM_001042603.1	595	gGa/gCa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2221334	2221334	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	169	711	0	ENST00000326181.6:c.418G>C	p.Asp140His	p.D140H	ENST00000326181	NM_032271.2	140	Gac/Cac																																																																															
MYC	4609	MSKCC	GRCh37	8	128752989	128752989	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	53	469	0	ENST00000377970.2:c.1150G>C	p.Glu384Gln	p.E384Q	ENST00000377970	NM_002467.4	384	Gag/Cag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111504	8111505	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	163	654	0	ENST00000346208.3:c.992dup	p.Asn331LysfsTer21	p.N331Kfs*21	ENST00000346208		330	-/A																																																																															
STK11	6794	MSKCC	GRCh37	19	1220673	1220682	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTCCGGCT	TTCTCCGGCT	-			P-0021990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	150	661	0	ENST00000326873.7:c.692_701del	p.Phe231SerfsTer53	p.F231Sfs*53	ENST00000326873	NM_000455.4	231	TTCTCCGGCTtc/tc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0022193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	65	815	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0022283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	190	746	0	ENST00000269305.4:c.321C>G	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taG																																																																															
STK11	6794	MSKCC	GRCh37	19	1222982	1222982	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T	rs727504172		P-0022283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	268	558	1	ENST00000326873.7:c.921-2A>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																																
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519963		P-0022283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	75	443	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																															
JUN	3725	MSKCC	GRCh37	1	59248397	59248397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	99	397	1	ENST00000371222.2:c.346C>T	p.Arg116Cys	p.R116C	ENST00000371222	NM_002228.3	116	Cgc/Tgc																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180599	94180599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	85	478	0	ENST00000323929.3:c.1569G>T	p.Met523Ile	p.M523I	ENST00000323929	NM_005591.3	523	atG/atT																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870945	12870977	+	inframe_deletion	In_Frame_Del	DEL	CGCAAGTGGAATTTCGATTTTCAGAATCACAAA	CGCAAGTGGAATTTCGATTTTCAGAATCACAAA	-			P-0022283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	68	325	0	ENST00000228872.4:c.173_205del	p.Arg58_Lys68del	p.R58_K68del	ENST00000228872	NM_004064.3	58	CGCAAGTGGAATTTCGATTTTCAGAATCACAAA/-																																																																															
B2M	567	MSKCC	GRCh37	15	45003734	45003748	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	TTCGGGCCGAGATGT	TTCGGGCCGAGATGT	-			P-0022283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	464	85	0	ENST00000558401.1:c.-11_4del		p.*4*	ENST00000558401	NM_004048.2	4																																																																																
PPP2R1A	5518	MSKCC	GRCh37	19	52714651	52714651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	171	711	1	ENST00000322088.6:c.409G>T	p.Gly137Cys	p.G137C	ENST00000322088	NM_014225.5	137	Ggc/Tgc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010475	48010475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	155	610	0	ENST00000234420.5:c.103G>T	p.Ala35Ser	p.A35S	ENST00000234420	NM_000179.2	35	Gcc/Tcc																																																																															
MET	4233	MSKCC	GRCh37	7	116415121	116415121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	153	646	2	ENST00000397752.3:c.3215G>T	p.Gly1072Val	p.G1072V	ENST00000397752	NM_000245.2	1072	gGg/gTg																																																																															
ABL1	25	MSKCC	GRCh37	9	133759407	133759407	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	173	746	1	ENST00000318560.5:c.1730G>T	p.Arg577Leu	p.R577L	ENST00000318560	NM_005157.4	577	cGa/cTa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0022066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	791	592	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0022066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	41	516	1	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061250	38061250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	227	607	1	ENST00000250448.2:c.739C>T	p.His247Tyr	p.H247Y	ENST00000250448	NM_004496.3	247	Cac/Tac																																																																															
CDH1	999	MSKCC	GRCh37	16	68842468	68842468	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0022066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	60	508	0	ENST00000261769.5:c.529C>T	p.Gln177Ter	p.Q177*	ENST00000261769	NM_004360.3	177	Cag/Tag																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62326690	62326690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	35	703	1	ENST00000508582.2:c.3581G>A	p.Arg1194Gln	p.R1194Q	ENST00000508582		1194	cGg/cAg																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99808247	99808247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	103	564	0	ENST00000280892.6:c.442C>T	p.Arg148Cys	p.R148C	ENST00000280892	NM_001130678.1	148	Cgc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	453	945	1	ENST00000326873.7:c.709G>T	p.Asp237Tyr	p.D237Y	ENST00000326873	NM_000455.4	237	Gac/Tac																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395260	139395260	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			377	562	767	0	ENST00000277541.6:c.5678del	p.Gly1893AlafsTer88	p.G1893Afs*88	ENST00000277541	NM_017617.3	1893	gGc/gc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109813	115109813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1146	432	759	0	ENST00000257566.3:c.2065G>T	p.Gly689Cys	p.G689C	ENST00000257566	NM_016569.3	689	Ggc/Tgc																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36931998	36931998	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			290	386	707	1	ENST00000361632.4:c.2471G>T	p.Gly824Val	p.G824V	ENST00000361632		824	gGg/gTg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162741817	162741817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			473	173	382	1	ENST00000367921.3:c.1508G>T	p.Cys503Phe	p.C503F	ENST00000367921	NM_006182.2	503	tGc/tTc																																																																															
BIRC3	330	MSKCC	GRCh37	11	102206719	102206719	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			428	195	566	0	ENST00000263464.3:c.1347G>T	p.Lys449Asn	p.K449N	ENST00000263464	NM_001165.4	449	aaG/aaT																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125514113	125514113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			552	258	709	0	ENST00000428830.2:c.1051G>T	p.Asp351Tyr	p.D351Y	ENST00000428830	NM_001114121.2	351	Gat/Tat																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120811	115120811	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			442	491	527	1	ENST00000257566.3:c.195G>T	p.Met65Ile	p.M65I	ENST00000257566	NM_016569.3	65	atG/atT																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43762071	43762071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			499	147	640	0	ENST00000382044.4:c.1374G>T	p.Gln458His	p.Q458H	ENST00000382044	NM_001141980.1	458	caG/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	DEL	C	C	-	rs1131691033		P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	540	636	0	ENST00000269305.4:c.993+1del		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37876071	37876071	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			491	416	735	1	ENST00000269571.5:c.1930G>T	p.Ala644Ser	p.A644S	ENST00000269571		644	Gcc/Tcc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37882896	37882896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			495	397	781	1	ENST00000269571.5:c.2954G>A	p.Arg985His	p.R985H	ENST00000269571		985	cGc/cAc																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14629017	14629017	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			287	382	745	0	ENST00000254322.2:c.145G>C	p.Ala49Pro	p.A49P	ENST00000254322	NM_006145.1	49	Gct/Cct																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934713	49934713	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			648	190	699	0	ENST00000296474.3:c.2183G>T	p.Arg728Leu	p.R728L	ENST00000296474	NM_002447.2	728	cGg/cTg																																																																															
ATR	545	MSKCC	GRCh37	3	142215258	142215258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			244	387	657	0	ENST00000350721.4:c.5843G>T	p.Gly1948Val	p.G1948V	ENST00000350721	NM_001184.3	1948	gGg/gTg																																																																															
TET2	54790	MSKCC	GRCh37	4	106155914	106155914	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			259	219	415	0	ENST00000380013.4:c.815G>T	p.Gly272Val	p.G272V	ENST00000380013	NM_001127208.2	272	gGg/gTg																																																																															
MDC1	9656	MSKCC	GRCh37	6	30676116	30676116	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			146	220	466	0	ENST00000376406.3:c.2240G>A	p.Trp747Ter	p.W747*	ENST00000376406	NM_014641.2	747	tGg/tAg																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137525548	137525548	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			229	268	742	1	ENST00000367739.4:c.467A>T	p.Glu156Val	p.E156V	ENST00000367739	NM_000416.2	156	gAg/gTg																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864489	162864490	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			170	210	510	0	ENST00000366898.1:c.23dup	p.Asn8LysfsTer13	p.N8Kfs*13	ENST00000366898	NM_004562.2	8	aac/aaAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968190	68968190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			908	256	726	0	ENST00000288368.4:c.1219C>T	p.Pro407Ser	p.P407S	ENST00000288368	NM_024870.2	407	Cct/Tct																																																																															
PREX2	80243	MSKCC	GRCh37	8	69028112	69028112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			522	633	887	1	ENST00000288368.4:c.3271G>A	p.Gly1091Arg	p.G1091R	ENST00000288368	NM_024870.2	1091	Gga/Aga																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090449	5090449	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			96	85	333	1	ENST00000381652.3:c.2765G>T	p.Arg922Leu	p.R922L	ENST00000381652	NM_004972.3	922	cGg/cTg																																																																															
JAK2	3717	MSKCC	GRCh37	9	5126366	5126366	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			131	151	484	0	ENST00000381652.3:c.3211G>C	p.Gly1071Arg	p.G1071R	ENST00000381652	NM_004972.3	1071	Gga/Cga																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1331521	1331521	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	694	710	2	ENST00000381566.1:c.7C>T	p.Arg3Trp	p.R3W	ENST00000381566		3	Cgg/Tgg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933293	39933293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			876	857	998	1	ENST00000378444.4:c.1306G>T	p.Val436Phe	p.V436F	ENST00000378444	NM_001123385.1	436	Gtc/Ttc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045923	47045923	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			679	765	752	0	ENST00000329236.7:c.2484C>A	p.Tyr828Ter	p.Y828*	ENST00000329236	NM_001204466.1	828	taC/taA																																																																															
MED12	9968	MSKCC	GRCh37	X	70349594	70349594	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			721	354	811	1	ENST00000374080.3:c.3756G>T	p.Glu1252Asp	p.E1252D	ENST00000374080		1252	gaG/gaT																																																																															
TP53	7157	MSKCC	GRCh37	17	7579314	7579314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0022099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	25	549	0	ENST00000269305.4:c.373A>C	p.Thr125Pro	p.T125P	ENST00000269305	NM_001126112.2	125	Acg/Ccg																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99442712	99442712	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	42	614	0	ENST00000268035.6:c.1109T>G	p.Ile370Ser	p.I370S	ENST00000268035	NM_000875.3	370	aTt/aGt																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979011	7979011	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	47	684	0	ENST00000319144.4:c.1556A>G	p.Tyr519Cys	p.Y519C	ENST00000319144	NM_001139.2	519	tAt/tGt																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128036589	128036748	+	splice_donor_variant,intron_variant	Splice_Site	DEL	GGTCTTCCCTGGTTTCTGAGACCAGGGCCACAGAACAAGATCTTTGGAGCCCAAGAAGTTCCTGAGAGAAAAACAAAAAAACAAAACAACAGCCACCTTCTGCACTCTCAATGGGGAAGAGAAACTGGCCTGGAGGAAGCTCCAAGTTTTCAATTCTTAC	GGTCTTCCCTGGTTTCTGAGACCAGGGCCACAGAACAAGATCTTTGGAGCCCAAGAAGTTCCTGAGAGAAAAACAAAAAAACAAAACAACAGCCACCTTCTGCACTCTCAATGGGGAAGAGAAACTGGCCTGGAGGAAGCTCCAAGTTTTCAATTCTTAC	-			P-0022099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	24	56	0	ENST00000285398.2:c.1730+1_1730+160del		p.X577_splice	ENST00000285398	NM_000122.1	577																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0022030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	71	387	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
CBFB	865	MSKCC	GRCh37	16	67100699	67100699	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0022030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	153	594	0	ENST00000412916.2:c.397C>T	p.Gln133Ter	p.Q133*	ENST00000412916		133	Cag/Tag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115700	8115702	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGA	AGA	-			P-0022030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	28	358	0	ENST00000346208.3:c.1048-2_1048del		p.X350_splice	ENST00000346208		350																																																																																
TP53	7157	MSKCC	GRCh37	17	7577095	7577095	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519984		P-0022380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	139	768	0	ENST00000269305.4:c.843C>A	p.Asp281Glu	p.D281E	ENST00000269305	NM_001126112.2	281	gaC/gaA																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729399	41729399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	74	677	0	ENST00000242208.4:c.1130G>A	p.Arg377His	p.R377H	ENST00000242208	NM_002192.2	377	cGc/cAc																																																																															
PGR	5241	MSKCC	GRCh37	11	100933337	100933337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	80	660	0	ENST00000325455.5:c.2053C>T	p.Pro685Ser	p.P685S	ENST00000325455	NM_001202474.3	685	Cca/Tca																																																																															
EZH1	2145	MSKCC	GRCh37	17	40872362	40872362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	124	890	0	ENST00000428826.2:c.593C>T	p.Ser198Leu	p.S198L	ENST00000428826		198	tCa/tTa																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169998189	169998189	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0022380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	38	703	0	ENST00000295797.4:c.880G>C	p.Glu294Gln	p.E294Q	ENST00000295797	NM_002740.5	294	Gag/Cag																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934144	39934144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	26	725	0	ENST00000378444.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000378444	NM_001123385.1	152	cCg/cTg																																																																															
MYCL1	4610	MSKCC	GRCh37	1	40366956	40366956	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	95	838	0	ENST00000397332.2:c.241G>C	p.Ala81Pro	p.A81P	ENST00000397332	NM_001033082.2	81	Gca/Cca																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120502102	120502102	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	32	666	0	ENST00000256646.2:c.1939G>C	p.Asp647His	p.D647H	ENST00000256646	NM_024408.3	647	Gat/Cat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0022301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	191	991	1	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29685621	29685621	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0022301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	53	652	1	ENST00000358273.4:c.8094C>G	p.Tyr2698Ter	p.Y2698*	ENST00000358273	NM_001042492.2	2698	taC/taG																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098575	11098575	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	97	1098	1	ENST00000344626.4:c.1093G>T	p.Glu365Ter	p.E365*	ENST00000344626	NM_003072.3	365	Gag/Tag																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15280933	15280933	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	134	1126	2	ENST00000263388.2:c.5163G>A	p.Trp1721Ter	p.W1721*	ENST00000263388	NM_000435.2	1721	tgG/tgA																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943426	17943426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	169	980	0	ENST00000458235.1:c.2582G>A	p.Gly861Glu	p.G861E	ENST00000458235	NM_000215.3	861	gGg/gAg																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278071	18278071	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	168	1068	0	ENST00000222254.8:c.1691A>G	p.Lys564Arg	p.K564R	ENST00000222254	NM_005027.3	564	aAg/aGg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229381	36229381	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	98	711	0	ENST00000222270.7:c.8071A>G	p.Lys2691Glu	p.K2691E	ENST00000222270	NM_014727.1	2691	Aag/Gag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670292	134670292	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	43	495	0	ENST00000398015.3:c.203A>C	p.Gln68Pro	p.Q68P	ENST00000398015	NM_004441.4	68	cAg/cCg																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138461570	138461570	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0022301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	45	641	2	ENST00000289153.2:c.451A>T	p.Lys151Ter	p.K151*	ENST00000289153	NM_006219.2	151	Aaa/Taa																																																																															
KIT	3815	MSKCC	GRCh37	4	55524203	55524203	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	44	743	0	ENST00000288135.5:c.22T>C	p.Trp8Arg	p.W8R	ENST00000288135	NM_000222.2	8	Tgg/Cgg																																																																															
KIT	3815	MSKCC	GRCh37	4	55594203	55594203	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	38	474	2	ENST00000288135.5:c.1906G>T	p.Ala636Ser	p.A636S	ENST00000288135	NM_000222.2	636	Gcc/Tcc																																																																															
TET2	54790	MSKCC	GRCh37	4	106194073	106194073	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	40	335	0	ENST00000380013.4:c.4535C>T	p.Ala1512Val	p.A1512V	ENST00000380013	NM_001127208.2	1512	gCa/gTa																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31401657	31401658	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	52	526	0	ENST00000344624.3:c.4006_4007insT	p.Gln1336LeufsTer33	p.Q1336Lfs*33	ENST00000344624		1336	cag/cTag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564752	86564753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGA			P-0022301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	109	805	0	ENST00000274376.6:c.485_488dup	p.Glu163AspfsTer18	p.E163Dfs*18	ENST00000274376	NM_002890.2	162	cca/cCAGAca																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176522591	176522591	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	113	943	1	ENST00000292408.4:c.1688G>C	p.Arg563Pro	p.R563P	ENST00000292408	NM_213647.1	563	cGg/cCg																																																																															
SESN1	27244	MSKCC	GRCh37	6	109314049	109314049	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	44	672	0	ENST00000436639.2:c.1174A>C	p.Ser392Arg	p.S392R	ENST00000436639	NM_014454.2	392	Agt/Cgt																																																																															
BRAF	673	MSKCC	GRCh37	7	140477849	140477849	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	55	724	0	ENST00000288602.6:c.1459G>C	p.Val487Leu	p.V487L	ENST00000288602	NM_004333.4	487	Gtg/Ctg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151850033	151850033	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	66	331	0	ENST00000262189.6:c.12283A>T	p.Ser4095Cys	p.S4095C	ENST00000262189	NM_170606.2	4095	Agc/Tgc																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29195901	29195901	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	58	966	0	ENST00000240100.2:c.697C>G	p.Pro233Ala	p.P233A	ENST00000240100	NM_001394.6	233	Cca/Gca																																																																															
TP53	7157	MSKCC	GRCh37	17	7578188	7578188	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1171	69	893	0	ENST00000269305.4:c.661G>T	p.Glu221Ter	p.E221*	ENST00000269305	NM_001126112.2	221	Gag/Tag																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932136	36932136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	69	708	2	ENST00000361632.4:c.2333C>T	p.Ala778Val	p.A778V	ENST00000361632		778	gCg/gTg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420606	49420606	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1180	77	839	0	ENST00000301067.7:c.15143G>T	p.Arg5048Leu	p.R5048L	ENST00000301067	NM_003482.3	5048	cGt/cTt																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885512	111885512	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1253	90	912	0	ENST00000341259.2:c.1289A>C	p.His430Pro	p.H430P	ENST00000341259	NM_005475.2	430	cAc/cCc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993509	72993509	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	64	852	2	ENST00000268489.5:c.536delG	p.Gly179AlafsTer22	p.G179Afs*22	ENST00000268489	NM_006885.3	179	gGc/gc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5208253	5208253	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	53	741	0	ENST00000357368.4:c.5637C>G	p.His1879Gln	p.H1879Q	ENST00000357368	NM_002850.3	1879	caC/caG																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905596	50905596	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1136	81	898	1	ENST00000440232.2:c.724G>T	p.Ala242Ser	p.A242S	ENST00000440232	NM_002691.3	242	Gcg/Tcg																																																																															
SRC	6714	MSKCC	GRCh37	20	36031203	36031203	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	66	877	0	ENST00000358208.4:c.1322G>T	p.Arg441Leu	p.R441L	ENST00000358208		441	cGc/cTc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287244	33287244	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	120	818	0	ENST00000374542.5:c.1853C>G	p.Ser618Cys	p.S618C	ENST00000374542	NM_001141970.1	618	tCt/tGt																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	32	663	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	506	667	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0021921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	243	764	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729743	162729743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	119	648	0	ENST00000367921.3:c.829C>T	p.Arg277Cys	p.R277C	ENST00000367921	NM_006182.2	277	Cgc/Tgc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779589	3779589	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	398	1165	0	ENST00000262367.5:c.5459A>G	p.Lys1820Arg	p.K1820R	ENST00000262367	NM_004380.2	1820	aAg/aGg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	253	659	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11998898	11998898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	274	336	2	ENST00000353533.5:c.400C>T	p.Arg134Trp	p.R134W	ENST00000353533	NM_003010.3	134	Cgg/Tgg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2107149	2107149	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1540	98	702	0	ENST00000219476.3:c.818T>C	p.Ile273Thr	p.I273T	ENST00000219476	NM_000548.3	273	aTc/aCc																																																																															
ACVR1	90	MSKCC	GRCh37	2	158594957	158594957	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	111	480	0	ENST00000263640.3:c.1390G>T	p.Asp464Tyr	p.D464Y	ENST00000263640	NM_001105.4	464	Gac/Tac																																																																															
ESR1	2099	MSKCC	GRCh37	6	152420023	152420024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	51	643	0	ENST00000206249.3:c.1711dupG	p.Ala571GlyfsTer80	p.A571Gfs*80	ENST00000206249	NM_000125.3	570	-/G																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123504113	123504113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	130	540	0	ENST00000371139.4:c.289C>T	p.Pro97Ser	p.P97S	ENST00000371139	NM_001114937.2	97	Cct/Tct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	213	678	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
ATM	472	MSKCC	GRCh37	11	108115710	108115714	+	frameshift_variant	Frame_Shift_Del	DEL	AATTT	AATTT	-			P-0021935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	87	347	0	ENST00000278616.4:c.859_863delATTTA	p.Ile287TyrfsTer16	p.I287Yfs*16	ENST00000278616	NM_000051.3	286	caAATTTat/caat																																																																															
SOS1	6654	MSKCC	GRCh37	2	39214687	39214688	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	193	586	0	ENST00000402219.2:c.3436dupG	p.Glu1146GlyfsTer25	p.E1146Gfs*25	ENST00000402219	NM_005633.3	1146	gaa/gGaa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971174	21971175	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0021935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	259	452	0	ENST00000304494.5:c.183_184delGC	p.Glu61AspfsTer58	p.E61Dfs*58	ENST00000304494	NM_000077.4	61	gaGCtg/gatg																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44945181	44945181	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	232	720	1	ENST00000377967.4:c.3505G>T	p.Val1169Phe	p.V1169F	ENST00000377967	NM_021140.2	1169	Gtt/Ttt																																																																															
APC	324	MSKCC	GRCh37	5	112173656	112173656	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	213	465	0	ENST00000257430.4:c.2365C>T	p.Gln789Ter	p.Q789*	ENST00000257430	NM_000038.5	789	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0021926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	434	812	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
APC	324	MSKCC	GRCh37	5	112175720	112175720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	145	486	0	ENST00000257430.4:c.4429C>T	p.Gln1477Ter	p.Q1477*	ENST00000257430	NM_000038.5	1477	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0021926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	558	754	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																																
ERCC5	2073	MSKCC	GRCh37	13	103527775	103527775	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	176	548	0	ENST00000355739.4:c.3083A>C	p.Glu1028Ala	p.E1028A	ENST00000355739	NM_000123.3	1028	gAa/gCa																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660730	227660730	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	242	964	1	ENST00000305123.5:c.2725T>A	p.Leu909Met	p.L909M	ENST00000305123	NM_005544.2	909	Ttg/Atg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40727171	40727171	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1414	367	728	0	ENST00000373198.4:c.3793T>C	p.Phe1265Leu	p.F1265L	ENST00000373198	NM_133170.3	1265	Ttc/Ctc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129409	152129409	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	254	496	0	ENST00000206249.3:c.362T>C	p.Leu121Pro	p.L121P	ENST00000206249	NM_000125.3	121	cTg/cCg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	160	856	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0021854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	47	421	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																															
ERF	2077	MSKCC	GRCh37	19	42753152	42753152	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	48	638	0	ENST00000222329.4:c.1112C>G	p.Ser371Cys	p.S371C	ENST00000222329	NM_006494.2	371	tCt/tGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	191	756	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0021943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	79	735	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948712	71948712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	184	863	2	ENST00000298229.2:c.3424C>T	p.Arg1142Cys	p.R1142C	ENST00000298229	NM_001567.3	1142	Cgc/Tgc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115717	8115718	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTATGAAGGG			P-0021943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	74	426	0	ENST00000346208.3:c.1071_1072insGGCTATGAAG	p.Lys358GlyfsTer16	p.K358Gfs*16	ENST00000346208		355	act/aCTATGAAGGGct																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644948	67644963	+	frameshift_variant	Frame_Shift_Del	DEL	TCAGATGAAGACTGAA	TCAGATGAAGACTGAA	-			P-0021943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	139	651	0	ENST00000264010.4:c.213_228delTCAGATGAAGACTGAA	p.Gln72Ter	p.Q72*	ENST00000264010	NM_006565.3	71	ctTCAGATGAAGACTGAA/ct																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266567	198266567	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	91	592	0	ENST00000335508.6:c.2269A>G	p.Met757Val	p.M757V	ENST00000335508	NM_012433.2	757	Atg/Gtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0009972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	201	515	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920430	114920430	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	266	592	0	ENST00000543371.1:c.1373del	p.Leu458TyrfsTer33	p.L458Yfs*33	ENST00000543371	NM_001198531.1	457	acT/ac																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143045755	143045755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	73	247	0	ENST00000262992.4:c.1879G>A	p.Val627Ile	p.V627I	ENST00000262992	NM_001101669.1	627	Gtc/Atc																																																																															
APC	324	MSKCC	GRCh37	5	112175306	112175314	+	frameshift_variant	Frame_Shift_Del	DEL	GGTTCTAGT	GGTTCTAGT	A			P-0009972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	141	301	0	ENST00000257430.4:c.4015_4023delinsA	p.Gly1339IlefsTer12	p.G1339Ifs*12	ENST00000257430	NM_000038.5	1339	GGTTCTAGT/A																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0021874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	414	1006	1	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38950208	38950208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs149611613		P-0021874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	251	646	0	ENST00000357387.3:c.3742A>G	p.Met1248Val	p.M1248V	ENST00000357387	NM_152756.3	1248	Atg/Gtg																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0021877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	61	936	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89521721	89521721	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372594677		P-0021877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	28	585	2	ENST00000336596.2:c.2798C>T	p.Thr933Met	p.T933M	ENST00000336596	NM_005233.5	933	aCg/aTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039852	47039852	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	66	1060	0	ENST00000329236.7:c.961del	p.Ala321LeufsTer86	p.A321Lfs*86	ENST00000329236	NM_001204466.1	321	Gct/ct																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0021018-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			567	268	212	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984024	2984024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021018-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			661	243	225	3	ENST00000396946.4:c.506C>T	p.Thr169Met	p.T169M	ENST00000396946	NM_032415.4	169	aCg/aTg																																																																															
APC	324	MSKCC	GRCh37	5	112175232	112175232	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021018-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			157	69	172	0	ENST00000257430.4:c.3942del	p.Arg1314SerfsTer7	p.R1314Sfs*7	ENST00000257430	NM_000038.5	1314	aGg/ag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18762491	18762491	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021018-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			307	37	286	0	ENST00000266497.5:c.3987G>T	p.Lys1329Asn	p.K1329N	ENST00000266497		1329	aaG/aaT																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675070	40675070	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021018-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			855	56	314	0	ENST00000249776.8:c.34G>T	p.Val12Phe	p.V12F	ENST00000249776	NM_033286.3	12	Gtt/Ttt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	68	561	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	80	845	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0021895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	64	520	2	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005006	150005006	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	67	681	0	ENST00000253339.5:c.1219C>T	p.Gln407Ter	p.Q407*	ENST00000253339		407	Cag/Tag																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56170952	56170953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	44	485	0	ENST00000399503.3:c.1783dup	p.Leu595ProfsTer51	p.L595Pfs*51	ENST00000399503	NM_005921.1	594	gcc/gCcc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184160	56184163	+	frameshift_variant	Frame_Shift_Del	DEL	CAAT	CAAT	-			P-0021895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	63	612	0	ENST00000399503.3:c.4367_4370del	p.Asn1456IlefsTer4	p.N1456Ifs*4	ENST00000399503	NM_005921.1	1455	tcCAAT/tc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	184	753	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0021885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	274	702	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																															
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0021885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	86	319	1	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																															
HGF	3082	MSKCC	GRCh37	7	81381559	81381559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777026877		P-0021885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	71	367	0	ENST00000222390.5:c.502C>T	p.Arg168Trp	p.R168W	ENST00000222390	NM_000601.4	168	Cgg/Tgg																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26022275	26022275	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	198	584	0	ENST00000435504.4:c.382A>C	p.Lys128Gln	p.K128Q	ENST00000435504		128	Aag/Cag																																																																															
APC	324	MSKCC	GRCh37	5	112175153	112175153	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	133	277	0	ENST00000257430.4:c.3863del	p.Gly1288AspfsTer17	p.G1288Dfs*17	ENST00000257430	NM_000038.5	1288	Gga/ga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0021884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	48	659	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180039532	180039532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	169	822	1	ENST00000261937.6:c.3511G>A	p.Asp1171Asn	p.D1171N	ENST00000261937	NM_182925.4	1171	Gac/Aac																																																																															
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	232	603	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412252	139412252	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057523819		P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	350	629	0	ENST00000277541.6:c.1393G>A	p.Ala465Thr	p.A465T	ENST00000277541	NM_017617.3	465	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	152	692	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207201	1207201	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	432	678	0	ENST00000326873.7:c.289A>T	p.Lys97Ter	p.K97*	ENST00000326873	NM_000455.4	97	Aag/Tag																																																																															
POLD1	5424	MSKCC	GRCh37	19	50905112	50905112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	145	739	0	ENST00000440232.2:c.394G>A	p.Asp132Asn	p.D132N	ENST00000440232	NM_002691.3	132	Gat/Aat																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111445	8111445	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	146	535	1	ENST00000346208.3:c.931A>T	p.Arg311Trp	p.R311W	ENST00000346208		311	Agg/Tgg																																																																															
MGA	23269	MSKCC	GRCh37	15	42041817	42041817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	50	505	2	ENST00000219905.7:c.6012G>T	p.Glu2004Asp	p.E2004D	ENST00000219905	NM_001164273.1	2004	gaG/gaT																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242800987	242800987	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	255	615	0	ENST00000334409.5:c.4C>T	p.Gln2Ter	p.Q2*	ENST00000334409	NM_005018.2	2	Cag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445051	89445051	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	130	568	3	ENST00000336596.2:c.1371G>T	p.Trp457Cys	p.W457C	ENST00000336596	NM_005233.5	457	tgG/tgT																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149441291	149441291	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	215	601	0	ENST00000286301.3:c.1748A>G	p.Gln583Arg	p.Q583R	ENST00000286301	NM_005211.3	583	cAg/cGg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180040033	180040033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	225	735	1	ENST00000261937.6:c.3409C>T	p.Pro1137Ser	p.P1137S	ENST00000261937	NM_182925.4	1137	Ccg/Tcg																																																																															
CCND3	896	MSKCC	GRCh37	6	41908119	41908119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	370	598	0	ENST00000372991.4:c.403C>T	p.Arg135Cys	p.R135C	ENST00000372991	NM_001760.3	135	Cgc/Tgc																																																																															
MYC	4609	MSKCC	GRCh37	8	128750765	128750765	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1479	150	566	0	ENST00000377970.2:c.302A>T	p.Asn101Ile	p.N101I	ENST00000377970	NM_002467.4	101	aAc/aTc																																																																															
SYK	6850	MSKCC	GRCh37	9	93627380	93627380	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	124	596	0	ENST00000375746.1:c.846+1G>A		p.X282_splice	ENST00000375746	NM_001174167.1	282																																																																																
RBM10	8241	MSKCC	GRCh37	X	47044549	47044549	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	107	667	1	ENST00000329236.7:c.1812C>A	p.Asp604Glu	p.D604E	ENST00000329236	NM_001204466.1	604	gaC/gaA																																																																															
AR	367	MSKCC	GRCh37	X	66942818	66942818	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	248	596	1	ENST00000374690.3:c.2599G>T	p.Val867Leu	p.V867L	ENST00000374690	NM_000044.3	867	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	788	916	0	ENST00000269305.4:c.517G>C	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ctg																																																																															
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0021610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	309	669	5	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939536	71939536	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	268	1107	0	ENST00000298229.2:c.391G>C	p.Ala131Pro	p.A131P	ENST00000298229	NM_001567.3	131	Gcc/Ccc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949108	71949108	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	185	754	1	ENST00000298229.2:c.3575G>C	p.Arg1192Pro	p.R1192P	ENST00000298229	NM_001567.3	1192	cGg/cCg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879842	37879842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1156	168	783	0	ENST00000269571.5:c.2137C>T	p.Arg713Trp	p.R713W	ENST00000269571		713	Cgg/Tgg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5220027	5220027	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202004674		P-0021610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	240	847	0	ENST00000357368.4:c.3688G>A	p.Gly1230Ser	p.G1230S	ENST00000357368	NM_002850.3	1230	Ggc/Agc																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158476	26158476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	180	848	4	ENST00000289316.2:c.79G>A	p.Gly27Arg	p.G27R	ENST00000289316	NM_138720.2	27	Ggg/Agg																																																																															
TAP2	6891	MSKCC	GRCh37	6	32800591	32800591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1173	432	858	0	ENST00000374899.4:c.956G>A	p.Arg319Gln	p.R319Q	ENST00000374899	NM_018833.2	319	cGg/cAg																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468041	50468041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	123	505	0	ENST00000331340.3:c.1276C>A	p.Leu426Met	p.L426M	ENST00000331340	NM_006060.4	426	Ctg/Atg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	124	816	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
BLM	641	MSKCC	GRCh37	15	91290720	91290720	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs139282091		P-0021870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	54	492	0	ENST00000355112.3:c.98C>T	p.Ser33Leu	p.S33L	ENST00000355112	NM_000057.2	33	tCa/tTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577136	7577142	+	frameshift_variant	Frame_Shift_Del	DEL	TCCGTCC	TCCGTCC	-			P-0021870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	108	731	0	ENST00000269305.4:c.796_802del	p.Gly266ThrfsTer77	p.G266Tfs*77	ENST00000269305	NM_001126112.2	266	GGACGGAac/ac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	196	838	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80412493	80412493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	16	538	0	ENST00000286548.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000286548	NM_002072.3	183	cGa/cAa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133483	55133483	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	783	697	4	ENST00000257290.5:c.787G>T	p.Glu263Ter	p.E263*	ENST00000257290	NM_006206.4	263	Gaa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247267	153247267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	116	604	0	ENST00000281708.4:c.1535G>A	p.Arg512Lys	p.R512K	ENST00000281708	NM_033632.3	512	aGg/aAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579485	7579485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	201	859	0	ENST00000269305.4:c.202G>T	p.Glu68Ter	p.E68*	ENST00000269305	NM_001126112.2	68	Gag/Tag																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72163802	72163802	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	77	641	1	ENST00000357731.5:c.556C>T	p.Gln186Ter	p.Q186*	ENST00000357731	NM_173808.2	186	Caa/Taa																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78433876	78433876	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	96	630	0	ENST00000370768.2:c.223G>C	p.Ala75Pro	p.A75P	ENST00000370768	NM_003902.3	75	Gct/Cct																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176054966	176054966	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	134	864	0	ENST00000367669.3:c.1087C>G	p.His363Asp	p.H363D	ENST00000367669	NM_022457.5	363	Cat/Gat																																																																															
PARP1	142	MSKCC	GRCh37	1	226561961	226561961	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	261	723	0	ENST00000366794.5:c.2036T>A	p.Val679Glu	p.V679E	ENST00000366794	NM_001618.3	679	gTg/gAg																																																																															
PAK1	5058	MSKCC	GRCh37	11	77085377	77085377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	232	636	0	ENST00000356341.3:c.473C>T	p.Ala158Val	p.A158V	ENST00000356341	NM_002576.4	158	gCc/gTc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871147	12871147	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	25	363	0	ENST00000228872.4:c.374C>A	p.Ser125Tyr	p.S125Y	ENST00000228872	NM_004064.3	125	tCt/tAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378580	25378580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1136	83	829	0	ENST00000256078.4:c.418C>T	p.Pro140Ser	p.P140S	ENST00000256078	NM_033360.2	140	Cct/Tct																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557612	21557612	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	97	823	0	ENST00000382592.4:c.2233A>G	p.Met745Val	p.M745V	ENST00000382592	NM_014572.2	745	Atg/Gtg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28963971	28963971	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	97	568	1	ENST00000282397.4:c.1931G>T	p.Gly644Val	p.G644V	ENST00000282397	NM_002019.4	644	gGg/gTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912143	32912143	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	287	895	4	ENST00000380152.3:c.3651G>T	p.Arg1217Ser	p.R1217S	ENST00000380152		1217	agG/agT																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435854	110435854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	241	639	0	ENST00000375856.3:c.2547G>T	p.Gln849His	p.Q849H	ENST00000375856	NM_003749.2	849	caG/caT																																																																															
MGA	23269	MSKCC	GRCh37	15	42041834	42041834	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	109	663	0	ENST00000219905.7:c.6032del	p.Asn2011ThrfsTer11	p.N2011Tfs*11	ENST00000219905	NM_001164273.1	2010	cAa/ca																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678546	88678547	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	67	468	0	ENST00000360948.2:c.989dup	p.Pro331ThrfsTer76	p.P331Tfs*76	ENST00000360948	NM_001012338.2	330	cca/ccCa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644830	67644830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	263	568	2	ENST00000264010.4:c.95G>T	p.Gly32Val	p.G32V	ENST00000264010	NM_006565.3	32	gGc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579367	7579367	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	221	850	0	ENST00000269305.4:c.320A>G	p.Tyr107Cys	p.Y107C	ENST00000269305	NM_001126112.2	107	tAc/tGc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17118361	17118361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	221	890	0	ENST00000285071.4:c.1476C>A	p.Asn492Lys	p.N492K	ENST00000285071	NM_144997.5	492	aaC/aaA																																																																															
AKT2	208	MSKCC	GRCh37	19	40741882	40741882	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	285	741	2	ENST00000392038.2:c.1090A>T	p.Met364Leu	p.M364L	ENST00000392038	NM_001626.4	364	Atg/Ttg																																																																															
CIC	23152	MSKCC	GRCh37	19	42799191	42799191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	57	805	0	ENST00000575354.2:c.4675C>T	p.Pro1559Ser	p.P1559S	ENST00000575354	NM_015125.3	1559	Ccc/Tcc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45872199	45872199	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	44	799	0	ENST00000391945.4:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000391945	NM_000400.3	79	Gag/Cag																																																																															
MYCN	4613	MSKCC	GRCh37	2	16086069	16086069	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	260	745	3	ENST00000281043.3:c.1245G>T	p.Glu415Asp	p.E415D	ENST00000281043	NM_005378.4	415	gaG/gaT																																																																															
ALK	238	MSKCC	GRCh37	2	29543695	29543695	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	126	872	0	ENST00000389048.3:c.1468A>C	p.Thr490Pro	p.T490P	ENST00000389048	NM_004304.4	490	Acc/Ccc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285188	212285188	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	85	609	0	ENST00000342788.4:c.3113G>T	p.Arg1038Ile	p.R1038I	ENST00000342788	NM_005235.2	1038	aGa/aTa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538358	9538358	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	116	517	1	ENST00000353224.5:c.1640C>A	p.Thr547Asn	p.T547N	ENST00000353224	NM_177990.2	547	aCt/aAt																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40710653	40710653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	107	608	1	ENST00000373198.4:c.4198G>T	p.Gly1400Trp	p.G1400W	ENST00000373198	NM_133170.3	1400	Ggg/Tgg																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827933	40827933	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	354	809	1	ENST00000373198.4:c.2495C>A	p.Ala832Asp	p.A832D	ENST00000373198	NM_133170.3	832	gCc/gAc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259009	89259009	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	47	226	0	ENST00000336596.2:c.154-1G>T		p.X52_splice	ENST00000336596	NM_005233.5	52																																																																																
KDR	3791	MSKCC	GRCh37	4	55979564	55979564	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1415	122	756	0	ENST00000263923.4:c.883G>C	p.Asp295His	p.D295H	ENST00000263923	NM_002253.2	295	Gat/Cat																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143081512	143081512	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	99	563	0	ENST00000262992.4:c.1562G>T	p.Trp521Leu	p.W521L	ENST00000262992	NM_001101669.1	521	tGg/tTg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143094950	143094950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	134	623	0	ENST00000262992.4:c.1194G>T	p.Gln398His	p.Q398H	ENST00000262992	NM_001101669.1	398	caG/caT																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518122	187518122	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	161	769	0	ENST00000441802.2:c.12572G>T	p.Gly4191Val	p.G4191V	ENST00000441802	NM_005245.3	4191	gGg/gTg																																																																															
IL7R	3575	MSKCC	GRCh37	5	35861052	35861052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	394	569	2	ENST00000303115.3:c.181G>T	p.Asp61Tyr	p.D61Y	ENST00000303115	NM_002185.3	61	Gac/Tac																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876296	35876296	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	277	628	0	ENST00000303115.3:c.1088G>C	p.Arg363Thr	p.R363T	ENST00000303115	NM_002185.3	363	aGa/aCa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86659284	86659284	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	177	550	0	ENST00000274376.6:c.1573T>C	p.Cys525Arg	p.C525R	ENST00000274376	NM_002890.2	525	Tgt/Cgt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106543551	106543551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	77	495	0	ENST00000369096.4:c.353G>T	p.Gly118Val	p.G118V	ENST00000369096	NM_001198.3	118	gGt/gTt																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555023	106555023	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	179	611	0	ENST00000369096.4:c.2140C>A	p.Pro714Thr	p.P714T	ENST00000369096	NM_001198.3	714	Ccg/Acg																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729780	41729780	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	135	439	0	ENST00000242208.4:c.749G>C	p.Ser250Thr	p.S250T	ENST00000242208	NM_002192.2	250	aGt/aCt																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38314894	38314894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	140	606	4	ENST00000425967.3:c.170C>A	p.Ser57Tyr	p.S57Y	ENST00000425967	NM_001174067.1	57	tCc/tAc																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891341	101891341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	100	839	1	ENST00000374994.4:c.302G>T	p.Cys101Phe	p.C101F	ENST00000374994	NM_004612.2	101	tGc/tTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	138	856	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0021705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	269	835	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913384		P-0021705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	281	663	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0021675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	339	541	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
STK11	6794	MSKCC	GRCh37	19	1219381	1219381	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	286	590	1	ENST00000326873.7:c.433G>T	p.Glu145Ter	p.E145*	ENST00000326873	NM_000455.4	145	Gag/Tag																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115460	115115460	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0021675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	108	448	0	ENST00000257566.3:c.866T>A	p.Ile289Lys	p.I289K	ENST00000257566	NM_016569.3	289	aTa/aAa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0021703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	24	843	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	259	853	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																															
TET1	80312	MSKCC	GRCh37	10	70405761	70405761	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	53	609	0	ENST00000373644.4:c.3275A>G	p.Tyr1092Cys	p.Y1092C	ENST00000373644	NM_030625.2	1092	tAt/tGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	60	558	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022592	31022592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	46	681	2	ENST00000375687.4:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000375687	NM_015338.5	693	Cga/Tga																																																																															
CBFB	865	MSKCC	GRCh37	16	67063333	67063333	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	56	558	0	ENST00000412916.2:c.23A>G	p.Gln8Arg	p.Q8R	ENST00000412916		8	cAg/cGg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	142	883	0	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																															
RB1	5925	MSKCC	GRCh37	13	48941662	48941681	+	frameshift_variant	Frame_Shift_Del	DEL	TTATCTTAAAAATAAAGATC	TTATCTTAAAAATAAAGATC	-			P-0021706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	46	487	0	ENST00000267163.4:c.973_992del	p.Tyr325ArgfsTer9	p.Y325Rfs*9	ENST00000267163	NM_000321.2	324	atTTATCTTAAAAATAAAGATCta/atta																																																																															
MET	4233	MSKCC	GRCh37	7	116340253	116340253	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	110	490	0	ENST00000397752.3:c.1115A>G	p.Asp372Gly	p.D372G	ENST00000397752	NM_000245.2	372	gAc/gGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0021710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	133	551	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0021698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	117	751	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
EED	8726	MSKCC	GRCh37	11	85966309	85966309	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	64	569	1	ENST00000263360.6:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000263360	NM_003797.3	136	Caa/Taa																																																																															
ATM	472	MSKCC	GRCh37	11	108121566	108121566	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	329	727	0	ENST00000278616.4:c.1374C>G	p.Cys458Trp	p.C458W	ENST00000278616	NM_000051.3	458	tgC/tgG																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060903	38060912	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGCTTATG	GGAGCTTATG	-			P-0021698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	96	662	0	ENST00000250448.2:c.1077_1086del	p.Ile360GlyfsTer26	p.I360Gfs*26	ENST00000250448	NM_004496.3	359	ccCATAAGCTCC/cc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060913	38060913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	114	642	0	ENST00000250448.2:c.1076C>T	p.Pro359Leu	p.P359L	ENST00000250448	NM_004496.3	359	cCc/cTc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868320	45868320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	161	1170	0	ENST00000391945.4:c.457C>T	p.Pro153Ser	p.P153S	ENST00000391945	NM_000400.3	153	Ccc/Tcc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	164	746	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
CDH1	999	MSKCC	GRCh37	16	68835736	68835737	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	174	731	0	ENST00000261769.5:c.331dup	p.Ser111PhefsTer57	p.S111Ffs*57	ENST00000261769	NM_004360.3	109	-/T																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213849	66213849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	89	722	1	ENST00000273854.3:c.2581G>A	p.Val861Ile	p.V861I	ENST00000273854	NM_004439.5	861	Gtc/Atc																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178120	56178120	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	87	446	0	ENST00000399503.3:c.3095del	p.Asn1032ThrfsTer50	p.N1032Tfs*50	ENST00000399503	NM_005921.1	1031	agA/ag																																																																															
PREX2	80243	MSKCC	GRCh37	8	69069667	69069667	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	85	590	0	ENST00000288368.4:c.4342C>G	p.Leu1448Val	p.L1448V	ENST00000288368	NM_024870.2	1448	Ctc/Gtc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	109	688	0				ENST00000310581	NM_198253.2																																																																																	
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0021797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	253	905	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0021797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	79	968	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112106	115112106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	45	1043	0	ENST00000257566.3:c.1634C>T	p.Thr545Met	p.T545M	ENST00000257566	NM_016569.3	545	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249017	55249018	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0021831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	137	624	0	ENST00000275493.2:c.2317_2319dupCAC	p.His773dup	p.H773dup	ENST00000275493	NM_005228.3	773	ccc/ccCCAc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864355	57864355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	54	723	0	ENST00000228682.2:c.1832G>A	p.Arg611Gln	p.R611Q	ENST00000228682	NM_005269.2	611	cGg/cAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	166	660	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0021828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	191	836	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0021828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	48	384	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561423	9561423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201131316		P-0021828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	327	732	1	ENST00000353224.5:c.359C>T	p.Ala120Val	p.A120V	ENST00000353224	NM_177990.2	120	gCg/gTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242511	55242511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0021828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	8	495	0	ENST00000275493.2:c.2281G>A	p.Asp761Asn	p.D761N	ENST00000275493	NM_005228.3	761	Gat/Aat																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879580	37879580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	183	843	4	ENST00000269571.5:c.1955C>T	p.Thr652Met	p.T652M	ENST00000269571		652	aCg/aTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778738	3778738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	156	933	0	ENST00000262367.5:c.6310C>T	p.Arg2104Cys	p.R2104C	ENST00000262367	NM_004380.2	2104	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574018	7574035	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GCTCACGCCCACGGATCT	GCTCACGCCCACGGATCT	-			P-0021828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	92	793	0	ENST00000269305.4:c.994-2_1009del		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
APC	324	MSKCC	GRCh37	5	112137077	112137094	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCAGGTAAATAAATTATT	TCAGGTAAATAAATTATT	-			P-0021828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	48	464	0	ENST00000257430.4:c.832_834+15del		p.X278_splice	ENST00000257430	NM_000038.5	278																																																																																
RASA1	5921	MSKCC	GRCh37	5	86665631	86665631	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	66	346	0	ENST00000274376.6:c.1612C>T	p.Pro538Ser	p.P538S	ENST00000274376	NM_002890.2	538	Cca/Tca																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45371733	45371733	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	118	463	1	ENST00000262160.6:c.1258A>G	p.Lys420Glu	p.K420E	ENST00000262160	NM_005901.5	420	Aaa/Gaa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0021778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	90	744	1	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71026112	71026112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	92	564	0	ENST00000318789.4:c.1510C>T	p.Arg504Cys	p.R504C	ENST00000318789	NM_032682.5	504	Cgc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1218446	1218447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	149	915	0	ENST00000326873.7:c.326dup	p.Asn109LysfsTer54	p.N109Kfs*54	ENST00000326873	NM_000455.4	107	-/A																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602754	10602754	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	173	910	5	ENST00000171111.5:c.824C>A	p.Ser275Ter	p.S275*	ENST00000171111	NM_203500.1	275	tCg/tAg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530052	212530052	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	54	339	0	ENST00000342788.4:c.1867C>T	p.Gln623Ter	p.Q623*	ENST00000342788	NM_005235.2	623	Caa/Taa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519331	176519331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	72	659	1	ENST00000292408.4:c.737C>T	p.Pro246Leu	p.P246L	ENST00000292408	NM_213647.1	246	cCg/cTg																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038793	47038794	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	94	470	0	ENST00000329236.7:c.572dup	p.Leu192ProfsTer32	p.L192Pfs*32	ENST00000329236	NM_001204466.1	190	cag/caGg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412536	63412536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	26	370	0	ENST00000330258.3:c.631G>A	p.Ala211Thr	p.A211T	ENST00000330258	NM_152424.3	211	Gcc/Acc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	1907	694	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0021805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	285	651	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37681100	37681100	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	251	460	0	ENST00000447079.4:c.3269C>G	p.Ala1090Gly	p.A1090G	ENST00000447079	NM_015083.1	1090	gCt/gGt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0021734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	318	643	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0021734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	149	565	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																																
ASXL2	55252	MSKCC	GRCh37	2	26068366	26068368	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0021734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	370	589	0	ENST00000435504.4:c.122_124delAAG	p.Glu41del	p.E41del	ENST00000435504		41	gAAGga/gga																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206882	36206883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	217	451	0	ENST00000300305.3:c.629dup	p.Asp211ArgfsTer2	p.D211Rfs*2	ENST00000300305		210	cta/ctTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151921101	151921102	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0021734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	12	19	0	ENST00000262189.6:c.3321_3322del	p.Asp1107GlufsTer13	p.D1107Efs*13	ENST00000262189	NM_170606.2	1107	gaTAga/gaga																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25978946	25978946	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	97	672	0	ENST00000435504.4:c.977C>G	p.Ala326Gly	p.A326G	ENST00000435504		326	gCc/gGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	122	724	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
CDH1	999	MSKCC	GRCh37	16	68844175	68844175	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	153	840	1	ENST00000261769.5:c.763C>T	p.Gln255Ter	p.Q255*	ENST00000261769	NM_004360.3	255	Cag/Tag																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186501406	186501406	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	82	515	1	ENST00000323963.5:c.7G>C	p.Gly3Arg	p.G3R	ENST00000323963		3	Ggt/Cgt																																																																															
BCOR	54880	MSKCC	GRCh37	X	39923643	39923643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	112	893	1	ENST00000378444.4:c.3448G>A	p.Glu1150Lys	p.E1150K	ENST00000378444	NM_001123385.1	1150	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	163	514	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216702	36216702	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748120825		P-0021738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	138	595	0	ENST00000222270.7:c.3868C>T	p.Arg1290Cys	p.R1290C	ENST00000222270	NM_014727.1	1290	Cgc/Tgc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0021757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	124	719	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627306	37627307	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			P-0021757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	37	636	0	ENST00000447079.4:c.1233_1235dupTGC	p.Ala413dup	p.A413dup	ENST00000447079	NM_015083.1	413	-/GCT																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31379407	31379407	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0021757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	337	587	0	ENST00000328111.2:c.814G>C	p.Val272Leu	p.V272L	ENST00000328111	NM_006892.3	272	Gtc/Ctc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0021690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	187	650	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944761	31944761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	80	274	1	ENST00000340398.3:c.340G>A	p.Ala114Thr	p.A114T	ENST00000340398	NM_001013699.2	114	Gct/Act																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794814	242794814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	104	524	0	ENST00000334409.5:c.395C>T	p.Ala132Val	p.A132V	ENST00000334409	NM_005018.2	132	gCg/gTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916925	178916936	+	protein_altering_variant	In_Frame_Del	DEL	AGTAGGCAACCG	AGTAGGCAACCG	GTA			P-0021690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	404	627	5	ENST00000263967.3:c.312_323delinsGTA	p.Val105_Arg108delinsTyr	p.V105_R108delinsY	ENST00000263967	NM_006218.2	104	ccAGTAGGCAACCGt/ccGTAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	179	476	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68835794	68835794	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0021745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	267	654	0	ENST00000261769.5:c.385C>T	p.Gln129Ter	p.Q129*	ENST00000261769	NM_004360.3	129	Cag/Tag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0021718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	201	967	2	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411063	63411063	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	166	876	0	ENST00000330258.3:c.2104G>T	p.Glu702Ter	p.E702*	ENST00000330258	NM_152424.3	702	Gag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1207092	1207092	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	153	1056	2	ENST00000326873.7:c.180C>A	p.Tyr60Ter	p.Y60*	ENST00000326873	NM_000455.4	60	taC/taA																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748520	162748520	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0021718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	38	463	0	ENST00000367921.3:c.2433+1G>C		p.X811_splice	ENST00000367921	NM_006182.2	811																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10600473	10600473	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	135	819	0	ENST00000171111.5:c.1382T>G	p.Ile461Ser	p.I461S	ENST00000171111	NM_203500.1	461	aTc/aGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	35	596	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252994	36252995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0021720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	54	764	0	ENST00000300305.3:c.366_367dupGG	p.Asp123GlyfsTer11	p.D123Gfs*11	ENST00000300305		123	gat/gGGat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845366	151845366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	50	934	1	ENST00000262189.6:c.13646G>A	p.Arg4549His	p.R4549H	ENST00000262189	NM_170606.2	4549	cGc/cAc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794117	242794117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	329	1013	0	ENST00000334409.5:c.611G>A	p.Arg204His	p.R204H	ENST00000334409	NM_005018.2	204	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G	rs587782272		P-0021724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	262	804	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																																
DIS3	22894	MSKCC	GRCh37	13	73352418	73352418	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	104	861	1	ENST00000377767.4:c.487delA	p.Met163CysfsTer12	p.M163Cfs*12	ENST00000377767	NM_014953.3	163	Atg/tg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46268731	46268731	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1366	229	865	0	ENST00000371998.3:c.3016C>G	p.Gln1006Glu	p.Q1006E	ENST00000371998		1006	Caa/Gaa																																																																															
APC	324	MSKCC	GRCh37	5	112175137	112175143	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTGAA	AGCTGAA	-			P-0021724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	229	418	0	ENST00000257430.4:c.3846_3852del	p.Ala1283MetfsTer3	p.A1283Mfs*3	ENST00000257430	NM_000038.5	1282	tcAGCTGAA/tc																																																																															
AR	367	MSKCC	GRCh37	X	66931352	66931352	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	93	891	0	ENST00000374690.3:c.1994T>A	p.Ile665Asn	p.I665N	ENST00000374690	NM_000044.3	665	aTt/aAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0021754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	132	738	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	49	824	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038756	47038756	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	48	1037	0	ENST00000329236.7:c.532C>T	p.Gln178Ter	p.Q178*	ENST00000329236	NM_001204466.1	178	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0021696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	123	870	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
CIC	23152	MSKCC	GRCh37	19	42797777	42797777	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	225	871	0	ENST00000575354.2:c.3829C>T	p.Arg1277Cys	p.R1277C	ENST00000575354	NM_015125.3	1277	Cgc/Tgc																																																																															
STK11	6794	MSKCC	GRCh37	19	1207204	1207204	+	splice_donor_variant	Splice_Site	SNP	T	T	G	rs112235354		P-0021696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	73	782	0	ENST00000326873.7:c.290+2T>G		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																																
FLT3	2322	MSKCC	GRCh37	13	28644695	28644695	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	97	819	0	ENST00000241453.7:c.98T>C	p.Ile33Thr	p.I33T	ENST00000241453	NM_004119.2	33	aTc/aCc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81557484	81557484	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	69	632	0	ENST00000298171.2:c.464T>C	p.Ile155Thr	p.I155T	ENST00000298171	NM_000369.2	155	aTa/aCa																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097250	11097250	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	95	743	0	ENST00000344626.4:c.743del	p.Asn248IlefsTer55	p.N248Ifs*55	ENST00000344626	NM_003072.3	247	ccA/cc																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793205	33793210	+	inframe_deletion	In_Frame_Del	DEL	GGGCCC	GGGCCC	-			P-0021696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	19	81	0	ENST00000498907.2:c.111_116del	p.Gly38_Pro39del	p.G38_P39del	ENST00000498907	NM_004364.3	37	gcGGGCCCc/gcc																																																																															
BARD1	580	MSKCC	GRCh37	2	215645649	215645649	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	81	649	0	ENST00000260947.4:c.949G>C	p.Glu317Gln	p.E317Q	ENST00000260947	NM_000465.2	317	Gaa/Caa																																																																															
EP300	2033	MSKCC	GRCh37	22	41572389	41572389	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	129	923	2	ENST00000263253.7:c.4918G>T	p.Glu1640Ter	p.E1640*	ENST00000263253	NM_001429.3	1640	Gag/Tag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275229	41275229	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	83	445	0	ENST00000349496.5:c.1395C>G	p.Ile465Met	p.I465M	ENST00000349496	NM_001904.3	465	atC/atG																																																																															
TCEB1	6921	MSKCC	GRCh37	8	74868172	74868172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	15	194	0	ENST00000284811.8:c.122C>T	p.Thr41Met	p.T41M	ENST00000284811		41	aCg/aTg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696435	47696435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	245	1082	0	ENST00000347630.2:c.388G>A	p.Asp130Asn	p.D130N	ENST00000347630	NM_001007230.1	130	Gac/Aac																																																																															
AGO2	27161	MSKCC	GRCh37	8	141595381	141595381	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	332	1147	0	ENST00000220592.5:c.52A>T	p.Ile18Phe	p.I18F	ENST00000220592	NM_012154.3	18	Atc/Ttc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25457243	25457243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	31	735	1	ENST00000264709.3:c.2644C>T	p.Arg882Cys	p.R882C	ENST00000264709	NM_175629.2	882	Cgc/Tgc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0021730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	104	644	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	13	610	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38287448	38287448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011048-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	157	499	0	ENST00000425967.3:c.209C>A	p.Pro70His	p.P70H	ENST00000425967	NM_001174067.1	70	cCt/cAt																																																																															
CIC	23152	MSKCC	GRCh37	19	42796937	42796937	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011048-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			930	555	1016	0	ENST00000575354.2:c.3395C>G	p.Thr1132Ser	p.T1132S	ENST00000575354	NM_015125.3	1132	aCc/aGc																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864192	117864205	+	frameshift_variant	Frame_Shift_Del	DEL	TCACAGGCTCTGGG	TCACAGGCTCTGGG	-			P-0011048-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	233	534	0	ENST00000297338.2:c.1452_1465del	p.Pro485AlafsTer47	p.P485Afs*47	ENST00000297338	NM_006265.2	484	gaCCCAGAGCCTGTGAtg/gatg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343160	118343160	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011048-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			253	133	384	0	ENST00000534358.1:c.1286T>C	p.Ile429Thr	p.I429T	ENST00000534358	NM_005933.3	429	aTa/aCa																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118354931	118354934	+	frameshift_variant	Frame_Shift_Del	DEL	GCAG	GCAG	-			P-0011048-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			185	407	694	0	ENST00000534358.1:c.4123_4126del	p.Gly1375LeufsTer2	p.G1375Lfs*2	ENST00000534358	NM_005933.3	1374	GCAGgc/gc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151848649	151848649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011048-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	204	335	0	ENST00000262189.6:c.12544G>T	p.Asp4182Tyr	p.D4182Y	ENST00000262189	NM_170606.2	4182	Gat/Tat																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	211	831	0	ENST00000347630.2:c.259T>G	p.Tyr87Asp	p.Y87D	ENST00000347630	NM_001007230.1	87	Tac/Gac																																																																															
REL	5966	MSKCC	GRCh37	2	61149329	61149329	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	135	484	0	ENST00000295025.8:c.1519G>T	p.Gly507Ter	p.G507*	ENST00000295025	NM_002908.2	507	Gga/Tga																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735478	40735478	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	203	1030	0	ENST00000373198.4:c.3395T>C	p.Phe1132Ser	p.F1132S	ENST00000373198	NM_133170.3	1132	tTc/tCc																																																																															
APC	324	MSKCC	GRCh37	5	112157641	112157647	+	frameshift_variant	Frame_Shift_Del	DEL	TGAAACT	TGAAACT	-			P-0021627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	227	757	0	ENST00000257430.4:c.1362_1368del	p.Met454IlefsTer11	p.M454Ifs*11	ENST00000257430	NM_000038.5	454	aTGAAACTt/at																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061232	38061232	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1486264414		P-0021546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	73	947	0	ENST00000250448.2:c.757A>G	p.Met253Val	p.M253V	ENST00000250448	NM_004496.3	253	Atg/Gtg																																																																															
GNA11	2767	MSKCC	GRCh37	19	3094679	3094679	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	117	631	0	ENST00000078429.4:c.30C>G	p.Cys10Trp	p.C10W	ENST00000078429	NM_002067.2	10	tgC/tgG																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025955	48025955	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	160	608	0	ENST00000234420.5:c.833T>G	p.Ile278Arg	p.I278R	ENST00000234420	NM_000179.2	278	aTa/aGa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061211	38061240	+	inframe_deletion	In_Frame_Del	DEL	AGTAGCAGCCGTTCTCGAACATGTTGCCGG	AGTAGCAGCCGTTCTCGAACATGTTGCCGG	-			P-0021594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	447	621	0	ENST00000250448.2:c.749_778del	p.Ser250_Tyr259del	p.S250_Y259del	ENST00000250448	NM_004496.3	250	tCCGGCAACATGTTCGAGAACGGCTGCTACTtg/ttg																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72076782	72076782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	307	712	0	ENST00000357731.5:c.715C>T	p.Arg239Cys	p.R239C	ENST00000357731	NM_173808.2	239	Cgc/Tgc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162171	47162171	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs200956000		P-0021594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	238	506	0	ENST00000409792.3:c.3955G>T	p.Val1319Leu	p.V1319L	ENST00000409792	NM_014159.6	1319	Gtg/Ttg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0021645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	328	838	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	63	380	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																															
PARK2	5071	MSKCC	GRCh37	6	162864388	162864388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	186	688	1	ENST00000366898.1:c.125G>A	p.Arg42His	p.R42H	ENST00000366898	NM_004562.2	42	cGt/cAt																																																																															
APC	324	MSKCC	GRCh37	5	112173271	112173272	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	34	292	0	ENST00000257430.4:c.1981dup	p.Cys661LeufsTer13	p.C661Lfs*13	ENST00000257430	NM_000038.5	660	-/T																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465543	8465543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	114	754	2	ENST00000356435.5:c.3637G>A	p.Gly1213Arg	p.G1213R	ENST00000356435		1213	Gga/Aga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0021585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	664	842	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
CDH1	999	MSKCC	GRCh37	16	68857307	68857307	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	169	424	1	ENST00000261769.5:c.1942G>T	p.Glu648Ter	p.E648*	ENST00000261769	NM_004360.3	648	Gaa/Taa																																																																															
CBFB	865	MSKCC	GRCh37	16	67063666	67063685	+	frameshift_variant	Frame_Shift_Del	DEL	GAACGCCAGGCACGCTTCCA	GAACGCCAGGCACGCTTCCA	-			P-0021585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	176	583	0	ENST00000412916.2:c.122_141del	p.Gln41LeufsTer35	p.Q41Lfs*35	ENST00000412916		39	GAACGCCAGGCACGCTTCCAg/g																																																																															
NF1	4763	MSKCC	GRCh37	17	29676254	29676263	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGCCTACT	GTGGCCTACT	CC			P-0021585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	274	502	1	ENST00000358273.4:c.7306_7315delinsCC	p.Val2436ProfsTer9	p.V2436Pfs*9	ENST00000358273	NM_001042492.2	2436	GTGGCCTACTta/CCta																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910306	50910306	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1341055535		P-0021585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	345	929	2	ENST00000440232.2:c.1561C>T	p.Arg521Trp	p.R521W	ENST00000440232	NM_002691.3	521	Cgg/Tgg																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119595305	119595306	+	stop_gained	Nonsense_Mutation	DNP	GT	GT	TC			P-0021585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	127	507	3	ENST00000316626.5:c.863_864delinsGA	p.Tyr288Ter	p.Y288*	ENST00000316626		288	tAC/tGA																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127951955	127951955	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	350	855	0	ENST00000373547.4:c.43del	p.Leu15CysfsTer10	p.L15Cfs*10	ENST00000373547	NM_002721.4	15	Ctg/tg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	26	463	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	41	541	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	38	932	2	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	47	753	2	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864309	117864309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	43	531	0	ENST00000297338.2:c.1348C>T	p.Arg450Cys	p.R450C	ENST00000297338	NM_006265.2	450	Cgc/Tgc																																																																															
JAK3	3718	MSKCC	GRCh37	19	17943348	17943348	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148688786		P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	58	809	0	ENST00000458235.1:c.2660G>A	p.Arg887His	p.R887H	ENST00000458235	NM_000215.3	887	cGt/cAt																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257169	19257169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	37	756	0	ENST00000162023.5:c.794C>T	p.Pro265Leu	p.P265L	ENST00000162023		265	cCg/cTg																																																																															
CUL3	8452	MSKCC	GRCh37	2	225368388	225368388	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	41	687	0	ENST00000264414.4:c.1358del	p.Asn453ThrfsTer2	p.N453Tfs*2	ENST00000264414	NM_003590.4	453	aAc/ac																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78428478	78428478	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	34	663	0	ENST00000370768.2:c.1321C>T	p.Gln441Ter	p.Q441*	ENST00000370768	NM_003902.3	441	Caa/Taa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443512	49443512	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	61	698	0	ENST00000301067.7:c.3859del	p.Glu1287ArgfsTer43	p.E1287Rfs*43	ENST00000301067	NM_003482.3	1287	Gag/ag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199451	16199451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	22	412	1	ENST00000375759.3:c.224G>A	p.Arg75His	p.R75H	ENST00000375759	NM_015001.2	75	cGc/cAc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692949	89692949	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	75	739	0	ENST00000371953.3:c.437del	p.Leu146Ter	p.L146*	ENST00000371953	NM_000314.4	145	Ttt/tt																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195733	102195733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	36	507	0	ENST00000263464.3:c.493G>A	p.Ala165Thr	p.A165T	ENST00000263464	NM_001165.4	165	Gca/Aca																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56478846	56478846	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs201479792		P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	53	1008	0	ENST00000267101.3:c.302A>G	p.Asn101Ser	p.N101S	ENST00000267101	NM_001982.3	101	aAc/aGc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861906	57861906	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	40	679	1	ENST00000228682.2:c.1207C>A	p.Leu403Met	p.L403M	ENST00000228682	NM_005269.2	403	Ctg/Atg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576248	88576248	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	36	592	0	ENST00000360948.2:c.1425G>T	p.Glu475Asp	p.E475D	ENST00000360948	NM_001012338.2	475	gaG/gaT																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216758	7216758	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	41	574	0	ENST00000380728.2:c.665T>C	p.Leu222Pro	p.L222P	ENST00000380728		222	cTa/cCa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600020	10600020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	52	957	0	ENST00000171111.5:c.1556T>C	p.Ile519Thr	p.I519T	ENST00000171111	NM_203500.1	519	aTc/aCc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50918795	50918795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	60	975	0	ENST00000440232.2:c.2665C>T	p.Arg889Cys	p.R889C	ENST00000440232	NM_002691.3	889	Cgc/Tgc																																																																															
SOS1	6654	MSKCC	GRCh37	2	39213366	39213366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	59	931	0	ENST00000402219.2:c.3601C>T	p.Arg1201Trp	p.R1201W	ENST00000402219	NM_005633.3	1201	Cgg/Tgg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484477	57484477	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	45	554	0	ENST00000371085.3:c.658C>T	p.His220Tyr	p.H220Y	ENST00000371085	NM_000516.4	220	Cac/Tac																																																																															
KDR	3791	MSKCC	GRCh37	4	55981468	55981468	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	41	639	0	ENST00000263923.4:c.469C>A	p.Leu157Ile	p.L157I	ENST00000263923	NM_002253.2	157	Ctc/Atc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539320	187539320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	34	549	0	ENST00000441802.2:c.8420C>T	p.Pro2807Leu	p.P2807L	ENST00000441802	NM_005245.3	2807	cCg/cTg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79961132	79961132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	69	788	1	ENST00000265081.6:c.529G>A	p.Ala177Thr	p.A177T	ENST00000265081	NM_002439.4	177	Gca/Aca																																																																															
RAD50	10111	MSKCC	GRCh37	5	131939072	131939072	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141989813		P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	64	628	0	ENST00000265335.6:c.2288G>A	p.Arg763His	p.R763H	ENST00000265335		763	cGc/cAc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524649	176524650	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	52	875	0	ENST00000292408.4:c.2385dup	p.Phe796LeufsTer18	p.F796Lfs*18	ENST00000292408	NM_213647.1	794	ttc/ttCc																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976766	2976766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	73	1100	2	ENST00000396946.4:c.1246G>A	p.Glu416Lys	p.E416K	ENST00000396946	NM_032415.4	416	Gag/Aag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737786	145737786	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	44	899	0	ENST00000428558.2:c.3044A>G	p.Glu1015Gly	p.E1015G	ENST00000428558	NM_004260.3	1015	gAg/gGg																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98232134	98232134	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199523893		P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	47	525	1	ENST00000331920.6:c.1808G>A	p.Arg603His	p.R603H	ENST00000331920	NM_000264.3	603	cGc/cAc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932084	39932084	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	47	415	0	ENST00000378444.4:c.2515A>G	p.Lys839Glu	p.K839E	ENST00000378444	NM_001123385.1	839	Aag/Gag																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44913140	44913140	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	41	465	0	ENST00000377967.4:c.815A>T	p.Tyr272Phe	p.Y272F	ENST00000377967	NM_021140.2	272	tAt/tTt																																																																															
AR	367	MSKCC	GRCh37	X	66937356	66937356	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	61	386	0	ENST00000374690.3:c.2210T>C	p.Val737Ala	p.V737A	ENST00000374690	NM_000044.3	737	gTc/gCc																																																																															
MED12	9968	MSKCC	GRCh37	X	70347844	70347844	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	56	425	0	ENST00000374080.3:c.3083A>G	p.Asn1028Ser	p.N1028S	ENST00000374080		1028	aAc/aGc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627744	37627744	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	109	1263	0	ENST00000447079.4:c.1661del	p.Leu554CysfsTer56	p.L554Cfs*56	ENST00000447079	NM_015083.1	553	ccT/cc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061221	38061232	+	inframe_deletion	In_Frame_Del	DEL	GTTCTCGAACAT	GTTCTCGAACAT	-			P-0021620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	61	895	0	ENST00000250448.2:c.757_768del	p.Met253_Asn256del	p.M253_N256del	ENST00000250448	NM_004496.3	253	ATGTTCGAGAAC/-																																																																															
MLH1	4292	MSKCC	GRCh37	3	37055943	37055943	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	60	666	0	ENST00000231790.2:c.698G>A	p.Cys233Tyr	p.C233Y	ENST00000231790	NM_000249.3	233	tGt/tAt																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627446	37627452	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAATC	AAAAATC	-			P-0021620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	89	971	0	ENST00000447079.4:c.1361_1367del	p.Glu454ValfsTer8	p.E454Vfs*8	ENST00000447079	NM_015083.1	454	gAAAAATCt/gt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250264	110250265	+	stop_gained	Nonsense_Mutation	DNP	CG	CG	TC			P-0021620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	49	998	0	ENST00000374672.4:c.410_411delinsGA	p.Ser137Ter	p.S137*	ENST00000374672	NM_004235.4	137	tCG/tGA																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115965	8115974	+	frameshift_variant	Frame_Shift_Del	DEL	CATGGTCACC	CATGGTCACC	-			P-0021543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	54	455	0	ENST00000346208.3:c.1311_1320del	p.Ser437ArgfsTer35	p.S437Rfs*35	ENST00000346208		437	agCATGGTCACC/ag																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575085	64575085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	161	779	0	ENST00000337652.1:c.737G>A	p.Cys246Tyr	p.C246Y	ENST00000337652	NM_130803.2	246	tGt/tAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	95	349	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56491626	56491626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	175	493	0	ENST00000267101.3:c.2518G>A	p.Val840Met	p.V840M	ENST00000267101	NM_001982.3	840	Gtg/Atg																																																																															
RB1	5925	MSKCC	GRCh37	13	49037972	49037972	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0021624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	100	674	1	ENST00000267163.4:c.2211+1G>A		p.X737_splice	ENST00000267163	NM_000321.2	737																																																																																
IGF2	3481	MSKCC	GRCh37	11	2156660	2156660	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	155	996	1	ENST00000434045.2:c.262C>A	p.Leu88Met	p.L88M	ENST00000434045	NM_001127598.1	88	Ctg/Atg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30046546	30046546	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	117	931	0	ENST00000331968.5:c.2637G>C	p.Gln879His	p.Q879H	ENST00000331968	NM_002742.2	879	caG/caC																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724583	43724583	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	44	1366	0	ENST00000382044.4:c.3484A>G	p.Met1162Val	p.M1162V	ENST00000382044	NM_001141980.1	1162	Atg/Gtg																																																																															
NUP93	9688	MSKCC	GRCh37	16	56832451	56832451	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0021624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	96	462	1	ENST00000308159.5:c.360+1G>T		p.X120_splice	ENST00000308159	NM_014669.4	120																																																																																
PREX2	80243	MSKCC	GRCh37	8	68939507	68939515	+	inframe_deletion	In_Frame_Del	DEL	ATATTTAGT	ATATTTAGT	-			P-0021624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	326	812	0	ENST00000288368.4:c.493_501del	p.Tyr165_Val167del	p.Y165_V167del	ENST00000288368	NM_024870.2	164	ggATATTTAGTa/gga																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	97	369	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99193530	99193530	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	104	669	0	ENST00000074304.5:c.2725G>C	p.Glu909Gln	p.E909Q	ENST00000074304	NM_001134224.1	909	Gag/Cag																																																																															
ARID2	196528	MSKCC	GRCh37	12	46287230	46287245	+	frameshift_variant	Frame_Shift_Del	DEL	AACTCCTAGAGCACAA	AACTCCTAGAGCACAA	-			P-0021582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	57	492	0	ENST00000334344.6:c.5177_5192del	p.Thr1726ArgfsTer4	p.T1726Rfs*4	ENST00000334344	NM_152641.2	1725	tcAACTCCTAGAGCACAA/tc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470914	25470914	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	118	719	0	ENST00000264709.3:c.847G>C	p.Glu283Gln	p.E283Q	ENST00000264709	NM_175629.2	283	Gag/Cag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879279	151879279	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0021582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	68	559	0	ENST00000262189.6:c.5666C>G	p.Ser1889Ter	p.S1889*	ENST00000262189	NM_170606.2	1889	tCa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	159	794	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
STK11	6794	MSKCC	GRCh37	19	1219413	1219413	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0021535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	95	663	0	ENST00000326873.7:c.464+1G>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																																
RET	5979	MSKCC	GRCh37	10	43613917	43613917	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	97	744	0	ENST00000355710.3:c.2381G>T	p.Cys794Phe	p.C794F	ENST00000355710	NM_020975.4	794	tGc/tTc																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781902	3781903	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0021535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	100	830	1	ENST00000262367.5:c.4764_4765delinsTT	p.Lys1588_Asn1589delinsAsnTyr	p.K1588_N1589delinsNY	ENST00000262367	NM_004380.2	1588	aaGAac/aaTTac																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805628	46805628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	127	808	1	ENST00000290295.7:c.328C>A	p.Pro110Thr	p.P110T	ENST00000290295	NM_006361.5	110	Ccc/Acc																																																																															
MAP2K2	5605	MSKCC	GRCh37	19	4117625	4117625	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0021535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	93	662	1	ENST00000262948.5:c.95C>T	p.Ala32Val	p.A32V	ENST00000262948	NM_030662.3	32	gCa/gTa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602926	10602926	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	131	793	0	ENST00000171111.5:c.652G>C	p.Glu218Gln	p.E218Q	ENST00000171111	NM_203500.1	218	Gag/Cag																																																																															
CCNE1	898	MSKCC	GRCh37	19	30312916	30312916	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	99	675	0	ENST00000262643.3:c.719G>T	p.Arg240Leu	p.R240L	ENST00000262643	NM_001238.2	240	cGt/cTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629234	187629234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	131	775	0	ENST00000441802.2:c.1748G>T	p.Gly583Val	p.G583V	ENST00000441802	NM_005245.3	583	gGc/gTc																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31486597	31486597	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0021535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	123	640	0	ENST00000344624.3:c.1914+1G>T		p.X638_splice	ENST00000344624		638																																																																																
APC	324	MSKCC	GRCh37	5	112179562	112179563	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0021535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	66	492	0	ENST00000257430.4:c.8271_8272delinsTT	p.Glu2758Ter	p.E2758*	ENST00000257430	NM_000038.5	2757	gtGGaa/gtTTaa																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044957	47044957	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	126	446	0	ENST00000329236.7:c.2049T>G	p.Cys683Trp	p.C683W	ENST00000329236	NM_001204466.1	683	tgT/tgG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	443	758	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0021591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	301	946	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0021591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	146	624	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	163	826	3	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0021539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	175	681	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986753	36986754	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	40	168	1	ENST00000354822.5:c.935dup	p.Gln313ThrfsTer126	p.Q313Tfs*126	ENST00000354822	NM_001079668.2	312	cta/ctTa																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56811531	56811531	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	139	648	0	ENST00000337432.4:c.1079A>C	p.Glu360Ala	p.E360A	ENST00000337432	NM_058216.2	360	gAa/gCa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0021548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	468	864	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673154	30673154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	153	629	0	ENST00000376406.3:c.3806C>T	p.Thr1269Ile	p.T1269I	ENST00000376406	NM_014641.2	1269	aCt/aTt																																																																															
ATRX	546	MSKCC	GRCh37	X	76855002	76855002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	218	863	0	ENST00000373344.5:c.5834G>T	p.Gly1945Val	p.G1945V	ENST00000373344	NM_000489.3	1945	gGa/gTa																																																																															
ATM	472	MSKCC	GRCh37	11	108202220	108202220	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	434	572	0	ENST00000278616.4:c.7565A>C	p.Gln2522Pro	p.Q2522P	ENST00000278616	NM_000051.3	2522	cAa/cCa																																																																															
MSH2	4436	MSKCC	GRCh37	2	47707970	47707970	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	432	578	0	ENST00000233146.2:c.2594T>G	p.Ile865Ser	p.I865S	ENST00000233146	NM_000251.2	865	aTc/aGc																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198274655	198274655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1169	266	556	0	ENST00000335508.6:c.743C>T	p.Thr248Ile	p.T248I	ENST00000335508	NM_012433.2	248	aCc/aTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	36	645	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0021583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	64	819	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0021583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	14	379	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089654	27089655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	33	757	0	ENST00000324856.7:c.2612dup	p.Asn871LysfsTer65	p.N871Kfs*65	ENST00000324856	NM_006015.4	870	-/A																																																																															
JAK1	3716	MSKCC	GRCh37	1	65307199	65307199	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	30	834	1	ENST00000342505.4:c.2489A>G	p.Tyr830Cys	p.Y830C	ENST00000342505	NM_002227.2	830	tAt/tGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061225	38061238	+	protein_altering_variant	In_Frame_Del	DEL	TCGAACATGTTGCC	TCGAACATGTTGCC	GA			P-0021626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	142	849	3	ENST00000250448.2:c.751_764delinsTC	p.Gly251_Glu255delinsSer	p.G251_E255delinsS	ENST00000250448	NM_004496.3	251	GGCAACATGTTCGAg/TCg																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	155	828	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200663	128200663	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0021542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	179	839	0	ENST00000341105.2:c.1142A>G	p.Asn381Ser	p.N381S	ENST00000341105	NM_032638.4	381	aAt/aGt																																																																															
APC	324	MSKCC	GRCh37	5	112102907	112102908	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0021542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	138	492	0	ENST00000257430.4:c.242_243del	p.Asn81IlefsTer57	p.N81Ifs*57	ENST00000257430	NM_000038.5	81	aAT/a																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151864231	151864232	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	TG			P-0021542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	89	493	0	ENST00000262189.6:c.9748_9749dup	p.Gln3250HisfsTer13	p.Q3250Hfs*13	ENST00000262189	NM_170606.2	3250	cag/caCAg																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748129	41748129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	52	241	0	ENST00000226382.2:c.640G>A	p.Gly214Ser	p.G214S	ENST00000226382	NM_003924.3	214	Ggc/Agc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0021574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	134	573	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37864656	37864656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	76	801	1	ENST00000269571.5:c.308G>A	p.Arg103Gln	p.R103Q	ENST00000269571		103	cGa/cAa																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117690306	117690306	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	36	449	0	ENST00000369458.3:c.823C>G	p.Leu275Val	p.L275V	ENST00000369458	NM_024626.3	275	Ctc/Gtc																																																																															
FYN	2534	MSKCC	GRCh37	6	112035575	112035575	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	25	566	0	ENST00000368678.4:c.319G>C	p.Glu107Gln	p.E107Q	ENST00000368678		107	Gaa/Caa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425644	49425644	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1057517992		P-0021574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	43	700	0	ENST00000301067.7:c.12844C>T	p.Arg4282Ter	p.R4282*	ENST00000301067	NM_003482.3	4282	Cga/Tga																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138199864	138199864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	56	444	0	ENST00000237289.4:c.1282G>C	p.Glu428Gln	p.E428Q	ENST00000237289	NM_001270507.1	428	Gag/Cag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539885	187539885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	26	451	1	ENST00000441802.2:c.7855C>A	p.Leu2619Ile	p.L2619I	ENST00000441802	NM_005245.3	2619	Ctt/Att																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448173	49448173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	56	629	0	ENST00000301067.7:c.427G>A	p.Ala143Thr	p.A143T	ENST00000301067	NM_003482.3	143	Gct/Act																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211836	2211836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	94	672	1	ENST00000398665.3:c.1552G>A	p.Glu518Lys	p.E518K	ENST00000398665	NM_032482.2	518	Gag/Aag																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373151	118373151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	157	486	0	ENST00000534358.1:c.6544G>A	p.Gly2182Ser	p.G2182S	ENST00000534358	NM_005933.3	2182	Ggt/Agt																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109764	115109764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	282	941	0	ENST00000257566.3:c.2114C>T	p.Ser705Phe	p.S705F	ENST00000257566	NM_016569.3	705	tCc/tTc																																																																															
TCF3	6929	MSKCC	GRCh37	19	1646408	1646408	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	195	724	0	ENST00000344749.5:c.91A>G	p.Thr31Ala	p.T31A	ENST00000344749	NM_001136139.2	31	Acc/Gcc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542480	187542480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	171	568	0	ENST00000441802.2:c.5260C>T	p.His1754Tyr	p.H1754Y	ENST00000441802	NM_005245.3	1754	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0021506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	29	961	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	18	944	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876401	35876401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	42	863	0	ENST00000303115.3:c.1193C>A	p.Pro398His	p.P398H	ENST00000303115	NM_002185.3	398	cCt/cAt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246443	46246443	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0021506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	23	501	0	ENST00000334344.6:c.4537A>T	p.Lys1513Ter	p.K1513*	ENST00000334344	NM_152641.2	1513	Aaa/Taa																																																																															
SMO	6608	MSKCC	GRCh37	7	128846040	128846040	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	36	1039	0	ENST00000249373.3:c.970G>T	p.Ala324Ser	p.A324S	ENST00000249373	NM_005631.4	324	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	89	1149	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717609	89717609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0021498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	51	703	0	ENST00000371953.3:c.635-1G>C		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																																
FGF3	2248	MSKCC	GRCh37	11	69631183	69631183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	41	937	0	ENST00000334134.2:c.229G>A	p.Glu77Lys	p.E77K	ENST00000334134	NM_005247.2	77	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0021429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	98	757	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223422	53223422	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	166	982	1	ENST00000375401.3:c.3937C>T	p.Gln1313Ter	p.Q1313*	ENST00000375401	NM_004187.3	1313	Caa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0021500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	250	811	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	111	807	0	ENST00000269305.4:c.809T>G	p.Phe270Cys	p.F270C	ENST00000269305	NM_001126112.2	270	tTt/tGt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970895	21970899	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CCTCA	CCTCA	-			P-0021500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	110	917	0	ENST00000304494.5:c.457+2_457+6del		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8485807	8485807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	43	380	2	ENST00000356435.5:c.3010C>A	p.Pro1004Thr	p.P1004T	ENST00000356435		1004	Cca/Aca																																																																															
B2M	567	MSKCC	GRCh37	15	45007672	45007672	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	23	552	0	ENST00000558401.1:c.119C>G	p.Ser40Ter	p.S40*	ENST00000558401	NM_004048.2	40	tCa/tGa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27058093	27058093	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	115	519	0	ENST00000324856.7:c.1801C>T	p.Gln601Ter	p.Q601*	ENST00000324856	NM_006015.4	601	Cag/Tag																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211389	98211389	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150850039		P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	48	927	0	ENST00000331920.6:c.3766G>A	p.Val1256Met	p.V1256M	ENST00000331920	NM_000264.3	1256	Gtg/Atg																																																																															
TERT	7015	MSKCC	GRCh37	5	1293718	1293718	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	72	938	0	ENST00000310581.5:c.1283G>T	p.Arg428Leu	p.R428L	ENST00000310581	NM_198253.2	428	cGg/cTg																																																																															
AURKA	6790	MSKCC	GRCh37	20	54958197	54958197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	85	704	0	ENST00000312783.6:c.410G>T	p.Arg137Leu	p.R137L	ENST00000312783	NM_198436.1	137	cGc/cTc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849141	156849141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	317	934	0	ENST00000524377.1:c.2033C>A	p.Thr678Asn	p.T678N	ENST00000524377	NM_002529.3	678	aCc/aAc																																																																															
FH	2271	MSKCC	GRCh37	1	241665777	241665777	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	27	586	0	ENST00000366560.3:c.1202G>T	p.Gly401Val	p.G401V	ENST00000366560	NM_000143.3	401	gGa/gTa																																																																															
SESN3	143686	MSKCC	GRCh37	11	94924741	94924741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	72	839	0	ENST00000536441.1:c.169G>A	p.Glu57Lys	p.E57K	ENST00000536441	NM_144665.3	57	Gaa/Aaa																																																																															
BIRC3	330	MSKCC	GRCh37	11	102201867	102201867	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	84	498	0	ENST00000263464.3:c.1219G>T	p.Gly407Ter	p.G407*	ENST00000263464	NM_001165.4	407	Gga/Tga																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118362012	118362012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	47	528	0	ENST00000534358.1:c.4798G>A	p.Glu1600Lys	p.E1600K	ENST00000534358	NM_005933.3	1600	Gag/Aag																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50482303	50482303	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	72	617	0	ENST00000394963.4:c.655-1G>T		p.X219_splice	ENST00000394963	NM_003076.4	219																																																																																
MDM2	4193	MSKCC	GRCh37	12	69233288	69233288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	15	409	0	ENST00000462284.1:c.1153G>A	p.Asp385Asn	p.D385N	ENST00000462284	NM_002392.5	385	Gat/Aat																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813355	102813355	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	69	664	1	ENST00000307046.8:c.334C>A	p.Leu112Ile	p.L112I	ENST00000307046	NM_001111285.1	112	Ctc/Atc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913836	32913836	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	26	602	0	ENST00000380152.3:c.5344C>G	p.Gln1782Glu	p.Q1782E	ENST00000380152		1782	Caa/Gaa																																																																															
BLM	641	MSKCC	GRCh37	15	91304252	91304252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	19	592	1	ENST00000355112.3:c.1649C>T	p.Ser550Phe	p.S550F	ENST00000355112	NM_000057.2	550	tCc/tTc																																																																															
CTCF	10664	MSKCC	GRCh37	16	67645327	67645327	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	40	561	0	ENST00000264010.4:c.592C>G	p.Gln198Glu	p.Q198E	ENST00000264010	NM_006565.3	198	Cag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578395	7578396	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGT			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	91	792	0	ENST00000269305.4:c.488_534dup	p.His179ThrfsTer7	p.H179Tfs*7	ENST00000269305	NM_001126112.2	178	-/ACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCAC																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7977017	7977017	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	43	810	0	ENST00000319144.4:c.1713C>G	p.Ile571Met	p.I571M	ENST00000319144	NM_001139.2	571	atC/atG																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602593	10602593	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	156	762	1	ENST00000171111.5:c.985T>A	p.Tyr329Asn	p.Y329N	ENST00000171111	NM_203500.1	329	Tac/Aac																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135059	11135059	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	138	961	3	ENST00000344626.4:c.3026G>T	p.Arg1009Leu	p.R1009L	ENST00000344626	NM_003072.3	1009	cGc/cTc																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47606119	47606119	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	18	706	0	ENST00000263735.4:c.583C>G	p.Leu195Val	p.L195V	ENST00000263735	NM_002354.2	195	Ctg/Gtg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48018193	48018193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	43	865	0	ENST00000234420.5:c.388C>T	p.His130Tyr	p.H130Y	ENST00000234420	NM_000179.2	130	Cat/Tat																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251872	212251872	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	17	318	0	ENST00000342788.4:c.3187C>A	p.Gln1063Lys	p.Q1063K	ENST00000342788	NM_005235.2	1063	Cag/Aag																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530064	212530064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	34	343	0	ENST00000342788.4:c.1855C>T	p.Pro619Ser	p.P619S	ENST00000342788	NM_005235.2	619	Cca/Tca																																																																															
CUL3	8452	MSKCC	GRCh37	2	225449042	225449664	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGAGTTTGTAAAGTGCTTAGGAAGCTTGTAGGATGAAAGACGCTATAAATACACCCAATGTTACTAGTTTATGACCACGGAGCATTCCGTGGAACCACTGTCACTGCGTCGGGGGCAGGTTGATGGCATAGACCTTCCTGGGGAGGGGGGCAGAGAGAGAGGGCAGCCCCTTCATCACCCTAAAAGCTAGGCTGGGTAAATTTTCAAAGTGTAGCGAAACCCCACGTGAAAAGTTCCACACACGCCCCACACAGGGAGGACTCCGCGGCTGCTAGCAGCGCCGGAGACTGGGCCTACAACCCCGGCAACGTGGGGAGGCGTGGGGCGGCCGAGGGGCCCCGGCCGCAGCCGACGCCCGCGGAGCGGCTGAAGGAGCAGCTCCCGGACGGGGGCGCGGCGCCAGGCCCGGGCTCCCGGCGCGGGGAACGGCCCGGGAGGGCGGCCGCGCCGGGGCCCCGCGCCGCCCGGTTGCCGGGAAGGCTCGCGCCCCGCGGCCGGCGGGCGTGGGGGAGGGGAGGCCGGGCCTGCGGCCTGTTGGGGGACTTCAGCCCGGGCCTCGCGTGCGGCTCTCGGCCCGGCCCCCGGCCCCGGGGTCCCGGACGCCGAGGAGAGACTCACCGGA	AAGAGTTTGTAAAGTGCTTAGGAAGCTTGTAGGATGAAAGACGCTATAAATACACCCAATGTTACTAGTTTATGACCACGGAGCATTCCGTGGAACCACTGTCACTGCGTCGGGGGCAGGTTGATGGCATAGACCTTCCTGGGGAGGGGGGCAGAGAGAGAGGGCAGCCCCTTCATCACCCTAAAAGCTAGGCTGGGTAAATTTTCAAAGTGTAGCGAAACCCCACGTGAAAAGTTCCACACACGCCCCACACAGGGAGGACTCCGCGGCTGCTAGCAGCGCCGGAGACTGGGCCTACAACCCCGGCAACGTGGGGAGGCGTGGGGCGGCCGAGGGGCCCCGGCCGCAGCCGACGCCCGCGGAGCGGCTGAAGGAGCAGCTCCCGGACGGGGGCGCGGCGCCAGGCCCGGGCTCCCGGCGCGGGGAACGGCCCGGGAGGGCGGCCGCGCCGGGGCCCCGCGCCGCCCGGTTGCCGGGAAGGCTCGCGCCCCGCGGCCGGCGGGCGTGGGGGAGGGGAGGCCGGGCCTGCGGCCTGTTGGGGGACTTCAGCCCGGGCCTCGCGTGCGGCTCTCGGCCCGGCCCCCGGCCCCGGGGTCCCGGACGCCGAGGAGAGACTCACCGGA	-			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			0	51	0	0	ENST00000264414.4:c.63_66+619del		p.X21_splice	ENST00000264414	NM_003590.4	21																																																																																
IRS1	3667	MSKCC	GRCh37	2	227663402	227663402	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	55	500	0	ENST00000305123.5:c.53A>G	p.Tyr18Cys	p.Y18C	ENST00000305123	NM_005544.2	18	tAc/tGc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40790021	40790021	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	42	665	0	ENST00000373198.4:c.2710C>A	p.Gln904Lys	p.Q904K	ENST00000373198	NM_133170.3	904	Cag/Aag																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513271	44513271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	119	863	0	ENST00000291552.4:c.664G>T	p.Gly222Cys	p.G222C	ENST00000291552	NM_006758.2	222	Ggc/Tgc																																																																															
PPARG	5468	MSKCC	GRCh37	3	12475584	12475584	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	42	621	0	ENST00000287820.6:c.1458G>C	p.Lys486Asn	p.K486N	ENST00000287820	NM_015869.4	486	aaG/aaC																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259574	89259574	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	22	530	0	ENST00000336596.2:c.718C>A	p.Pro240Thr	p.P240T	ENST00000336596	NM_005233.5	240	Cca/Aca																																																																															
ATR	545	MSKCC	GRCh37	3	142274802	142274802	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	81	691	0	ENST00000350721.4:c.2258G>C	p.Cys753Ser	p.C753S	ENST00000350721	NM_001184.3	753	tGt/tCt																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141100	55141100	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	74	613	0	ENST00000257290.5:c.1746T>A	p.Tyr582Ter	p.Y582*	ENST00000257290	NM_006206.4	582	taT/taA																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201809	66201809	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	37	702	0	ENST00000273854.3:c.2693C>A	p.Pro898Gln	p.P898Q	ENST00000273854	NM_004439.5	898	cCa/cAa																																																																															
SDHA	6389	MSKCC	GRCh37	5	226015	226015	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	11	166	0	ENST00000264932.6:c.474G>T	p.Met158Ile	p.M158I	ENST00000264932	NM_004168.2	158	atG/atT																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178562	56178562	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	13	359	0	ENST00000399503.3:c.3535G>C	p.Glu1179Gln	p.E1179Q	ENST00000399503	NM_005921.1	1179	Gag/Cag																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564327	86564327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	47	471	1	ENST00000274376.6:c.59G>T	p.Gly20Val	p.G20V	ENST00000274376	NM_002890.2	20	gGa/gTa																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839790	27839790	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	55	722	0	ENST00000328488.2:c.304G>T	p.Val102Leu	p.V102L	ENST00000328488	NM_003533.2	102	Gtg/Ttg																																																																															
STK19	8859	MSKCC	GRCh37	6	31940142	31940142	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	44	1019	0	ENST00000375331.2:c.284C>G	p.Ser95Cys	p.S95C	ENST00000375331	NM_004197.1	95	tCt/tGt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979213	93979213	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	46	521	0	ENST00000369303.4:c.1615A>C	p.Thr539Pro	p.T539P	ENST00000369303	NM_004440.3	539	Aca/Cca																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93982063	93982063	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	55	616	0	ENST00000369303.4:c.1402C>A	p.His468Asn	p.H468N	ENST00000369303	NM_004440.3	468	Cat/Aat																																																																															
ROS1	6098	MSKCC	GRCh37	6	117631283	117631283	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	29	702	0	ENST00000368508.3:c.6395G>C	p.Ser2132Thr	p.S2132T	ENST00000368508	NM_002944.2	2132	aGt/aCt																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137525479	137525479	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	18	682	0	ENST00000367739.4:c.536A>G	p.Asn179Ser	p.N179S	ENST00000367739	NM_000416.2	179	aAc/aGc																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138201347	138201347	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	40	623	0	ENST00000237289.4:c.2046G>C	p.Gln682His	p.Q682H	ENST00000237289	NM_001270507.1	682	caG/caC																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959221	2959221	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	186	826	0	ENST00000396946.4:c.2295G>C	p.Met765Ile	p.M765I	ENST00000396946	NM_032415.4	765	atG/atC																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520027	106520027	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	48	481	0	ENST00000359195.3:c.2455G>T	p.Asp819Tyr	p.D819Y	ENST00000359195	NM_002649.2	819	Gat/Tat																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859797	151859797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	52	486	1	ENST00000262189.6:c.10865C>T	p.Pro3622Leu	p.P3622L	ENST00000262189	NM_170606.2	3622	cCa/cTa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884356	151884356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	22	326	0	ENST00000262189.6:c.4999G>C	p.Glu1667Gln	p.E1667Q	ENST00000262189	NM_170606.2	1667	Gaa/Caa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152007129	152007129	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	42	628	0	ENST00000262189.6:c.771G>T	p.Glu257Asp	p.E257D	ENST00000262189	NM_170606.2	257	gaG/gaT																																																																															
PREX2	80243	MSKCC	GRCh37	8	69058461	69058461	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	29	658	1	ENST00000288368.4:c.4105C>T	p.Gln1369Ter	p.Q1369*	ENST00000288368	NM_024870.2	1369	Caa/Taa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971145	21971145	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	69	493	0	ENST00000304494.5:c.213C>G	p.Asn71Lys	p.N71K	ENST00000304494	NM_000077.4	71	aaC/aaG																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128268662	128268663	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	101	842	0	ENST00000265960.3:c.992_993del	p.Pro331GlnfsTer5	p.P331Qfs*5	ENST00000265960	NM_001006617.1	331	cCC/c																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139815632	139815632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	42	795	0	ENST00000247668.2:c.1103C>T	p.Ala368Val	p.A368V	ENST00000247668	NM_021138.3	368	gCt/gTt																																																																															
RBM10	8241	MSKCC	GRCh37	X	47044883	47044883	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	150	499	1	ENST00000329236.7:c.1975G>T	p.Asp659Tyr	p.D659Y	ENST00000329236	NM_001204466.1	659	Gac/Tac																																																																															
AR	367	MSKCC	GRCh37	X	66765742	66765742	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	169	622	1	ENST00000374690.3:c.754G>T	p.Glu252Ter	p.E252*	ENST00000374690	NM_000044.3	252	Gag/Tag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593443	48593443	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	114	597	0	ENST00000342988.3:c.1194G>T	p.Trp398Cys	p.W398C	ENST00000342988	NM_005359.5	398	tgG/tgT																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26031970	26031970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	71	549	0	ENST00000244661.2:c.319G>A	p.Asp107Asn	p.D107N	ENST00000244661	NM_003537.3	107	Gac/Aac																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	24	1040	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934578		P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	133	868	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																															
IGF2	3481	MSKCC	GRCh37	11	2154242	2154242	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	64	1061	0	ENST00000434045.2:c.686delC	p.Pro229GlnfsTer27	p.P229Qfs*27	ENST00000434045	NM_001127598.1	229	cCa/ca																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	881	1147	2	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																															
ATM	472	MSKCC	GRCh37	11	108196902	108196902	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	106	702	0	ENST00000278616.4:c.6925C>G	p.Leu2309Val	p.L2309V	ENST00000278616	NM_000051.3	2309	Ctg/Gtg																																																																															
ATM	472	MSKCC	GRCh37	11	108216540	108216540	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	59	772	0	ENST00000278616.4:c.8489T>G	p.Val2830Gly	p.V2830G	ENST00000278616	NM_000051.3	2830	gTt/gGt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245349	46245350	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	107	792	0	ENST00000334344.6:c.3444dup	p.Gln1149ThrfsTer11	p.Q1149Tfs*11	ENST00000334344	NM_152641.2	1148	tta/ttAa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640010	3640010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	166	1220	0	ENST00000294008.3:c.3629G>T	p.Ser1210Ile	p.S1210I	ENST00000294008	NM_032444.2	1210	aGc/aTc																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99179935	99179935	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1132	79	1076	1	ENST00000074304.5:c.1878G>C	p.Trp626Cys	p.W626C	ENST00000074304	NM_001134224.1	626	tgG/tgC																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430956	181430956	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	220	1027	1	ENST00000325404.1:c.808C>A	p.Leu270Ile	p.L270I	ENST00000325404	NM_003106.3	270	Ctc/Atc																																																																															
TERT	7015	MSKCC	GRCh37	5	1279473	1279473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	69	1172	4	ENST00000310581.5:c.2063G>T	p.Arg688Met	p.R688M	ENST00000310581	NM_198253.2	688	aGg/aTg																																																																															
HGF	3082	MSKCC	GRCh37	7	81372669	81372669	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	54	514	0	ENST00000222390.5:c.865G>T	p.Ala289Ser	p.A289S	ENST00000222390	NM_000601.4	289	Gct/Tct																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5549364	5549364	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	127	801	1	ENST00000397747.3:c.391C>A	p.Leu131Ile	p.L131I	ENST00000397747	NM_025239.3	131	Cta/Ata																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0021422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	281	721	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112915524	112915524	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	123	749	0	ENST00000351677.2:c.923A>G	p.Asn308Ser	p.N308S	ENST00000351677	NM_002834.3	308	aAt/aGt																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0021430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	255	866	3	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0021430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	210	658	3	ENST00000269305.4:c.560-2A>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40770570	40770570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	57	787	0	ENST00000373198.4:c.2812G>T	p.Gly938Trp	p.G938W	ENST00000373198	NM_133170.3	938	Ggg/Tgg																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980614	1980614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	159	553	3	ENST00000382891.5:c.4076G>A	p.Arg1359Gln	p.R1359Q	ENST00000382891	NM_133335.3	1359	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0021430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	152	614	4	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175282	112175282	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0021430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	123	394	0	ENST00000257430.4:c.3991A>T	p.Arg1331Ter	p.R1331*	ENST00000257430	NM_000038.5	1331	Aga/Tga																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968317	2968317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	203	829	3	ENST00000396946.4:c.1669C>T	p.Arg557Cys	p.R557C	ENST00000396946	NM_032415.4	557	Cgc/Tgc																																																																															
AR	367	MSKCC	GRCh37	X	66765263	66765263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	135	619	10	ENST00000374690.3:c.275G>A	p.Gly92Asp	p.G92D	ENST00000374690	NM_000044.3	92	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0021431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	56	608	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160653	56160654	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	178	468	0	ENST00000399503.3:c.930dup	p.Val311SerfsTer15	p.V311Sfs*15	ENST00000399503	NM_005921.1	309	-/A																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56184186	56184186	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0021431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	177	345	0	ENST00000399503.3:c.4389+2T>A		p.X1463_splice	ENST00000399503	NM_005921.1	1463																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0021424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	139	592	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0021424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	135	687	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612879	228612879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	220	560	0	ENST00000366696.1:c.148C>T	p.Arg50Cys	p.R50C	ENST00000366696	NM_003493.2	50	Cgc/Tgc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057936	27057937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0021424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	131	653	0	ENST00000324856.7:c.1649_1650dup	p.Tyr551ProfsTer69	p.Y551Pfs*69	ENST00000324856	NM_006015.4	548	-/CC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878503	151878503	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	148	669	0	ENST00000262189.6:c.6442T>A	p.Ser2148Thr	p.S2148T	ENST00000262189	NM_170606.2	2148	Tct/Act																																																																															
KDR	3791	MSKCC	GRCh37	4	55953837	55953837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	109	745	0	ENST00000263923.4:c.3599C>T	p.Ser1200Phe	p.S1200F	ENST00000263923	NM_002253.2	1200	tCc/tTc																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944914	31944914	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	48	300	0	ENST00000340398.3:c.187C>G	p.Arg63Gly	p.R63G	ENST00000340398	NM_001013699.2	63	Cgg/Ggg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141507	11141507	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	87	723	2	ENST00000344626.4:c.3484G>T	p.Gly1162Cys	p.G1162C	ENST00000344626	NM_003072.3	1162	Ggc/Tgc																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119624685	119624685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	97	577	0	ENST00000316626.5:c.730G>T	p.Gly244Cys	p.G244C	ENST00000316626		244	Ggc/Tgc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156851274	156851274	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	54	718	0	ENST00000524377.1:c.2231G>C	p.Arg744Pro	p.R744P	ENST00000524377	NM_002529.3	744	cGt/cCt																																																																															
TET1	80312	MSKCC	GRCh37	10	70451477	70451477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	127	673	0	ENST00000373644.4:c.6317C>G	p.Ser2106Cys	p.S2106C	ENST00000373644	NM_030625.2	2106	tCt/tGt																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64137198	64137198	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	45	773	0	ENST00000334205.4:c.1630G>T	p.Gly544Trp	p.G544W	ENST00000334205	NM_003942.2	544	Ggg/Tgg																																																																															
FGF19	9965	MSKCC	GRCh37	11	69518550	69518550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	50	622	3	ENST00000294312.3:c.95C>T	p.Pro32Leu	p.P32L	ENST00000294312	NM_005117.2	32	cCc/cTc																																																																															
PGR	5241	MSKCC	GRCh37	11	100998580	100998580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	48	668	2	ENST00000325455.5:c.1222G>T	p.Gly408Cys	p.G408C	ENST00000325455	NM_001202474.3	408	Ggt/Tgt																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125496701	125496701	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	150	464	0	ENST00000428830.2:c.38A>T	p.Gln13Leu	p.Q13L	ENST00000428830	NM_001114121.2	13	cAa/cTa																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022766	12022766	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	88	470	0	ENST00000396373.4:c.872G>T	p.Arg291Met	p.R291M	ENST00000396373	NM_001987.4	291	aGg/aTg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861995	57861996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	68	472	0	ENST00000228682.2:c.1297dup	p.Glu433GlyfsTer19	p.E433Gfs*19	ENST00000228682	NM_005269.2	432	-/G																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109795	115109795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	96	839	1	ENST00000257566.3:c.2083C>A	p.Arg695Ser	p.R695S	ENST00000257566	NM_016569.3	695	Cgc/Agc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28895693	28895693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	77	824	0	ENST00000282397.4:c.3081C>A	p.Asn1027Lys	p.N1027K	ENST00000282397	NM_002019.4	1027	aaC/aaA																																																																															
DICER1	23405	MSKCC	GRCh37	14	95574405	95574405	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	49	338	0	ENST00000343455.3:c.2462G>T	p.Arg821Leu	p.R821L	ENST00000343455	NM_177438.2	821	cGc/cTc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420272	88420272	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	94	634	1	ENST00000360948.2:c.2414G>T	p.Gly805Val	p.G805V	ENST00000360948	NM_001012338.2	805	gGg/gTg																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88483911	88483911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	116	745	0	ENST00000360948.2:c.1659C>A	p.Phe553Leu	p.F553L	ENST00000360948	NM_001012338.2	553	ttC/ttA																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348175	348175	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	205	717	1	ENST00000262320.3:c.1331G>T	p.Trp444Leu	p.W444L	ENST00000262320	NM_003502.3	444	tGg/tTg																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2213931	2213931	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	238	731	2	ENST00000326181.6:c.10G>T	p.Gly4Cys	p.G4C	ENST00000326181	NM_032271.2	4	Ggc/Tgc																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2221355	2221355	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	154	590	0	ENST00000326181.6:c.439G>T	p.Gly147Trp	p.G147W	ENST00000326181	NM_032271.2	147	Ggg/Tgg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779157	3779157	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	178	616	1	ENST00000262367.5:c.5891G>T	p.Arg1964Leu	p.R1964L	ENST00000262367	NM_004380.2	1964	cGt/cTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991499	72991499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	328	872	0	ENST00000268489.5:c.2546G>T	p.Gly849Val	p.G849V	ENST00000268489	NM_006885.3	849	gGc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578539	7578539	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	447	865	0	ENST00000269305.4:c.391A>T	p.Asn131Tyr	p.N131Y	ENST00000269305	NM_001126112.2	131	Aac/Tac																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15973761	15973761	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	172	553	0	ENST00000268712.3:c.4231A>T	p.Ser1411Cys	p.S1411C	ENST00000268712	NM_006311.3	1411	Agc/Tgc																																																																															
NF1	4763	MSKCC	GRCh37	17	29552227	29552227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	84	649	0	ENST00000358273.4:c.1960C>A	p.Pro654Thr	p.P654T	ENST00000358273	NM_001042492.2	654	Cct/Act																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435485	56435485	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	255	772	0	ENST00000407977.2:c.1652A>C	p.His551Pro	p.H551P	ENST00000407977		551	cAc/cCc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39576688	39576688	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	141	492	0	ENST00000262039.4:c.978A>T	p.Gln326His	p.Q326H	ENST00000262039	NM_002647.2	326	caA/caT																																																																															
MSH2	4436	MSKCC	GRCh37	2	47641522	47641522	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	47	483	0	ENST00000233146.2:c.907G>T	p.Asp303Tyr	p.D303Y	ENST00000233146	NM_000251.2	303	Gat/Tat																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198257747	198257747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	123	558	1	ENST00000335508.6:c.3705G>T	p.Glu1235Asp	p.E1235D	ENST00000335508	NM_012433.2	1235	gaG/gaT																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198257748	198257748	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	54	546	0	ENST00000335508.6:c.3704A>T	p.Glu1235Val	p.E1235V	ENST00000335508	NM_012433.2	1235	gAg/gTg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403190	213403190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	92	625	0	ENST00000342788.4:c.65C>T	p.Pro22Leu	p.P22L	ENST00000342788	NM_005235.2	22	cCc/cTc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793436	242793436	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	107	634	0	ENST00000334409.5:c.641C>A	p.Ser214Ter	p.S214*	ENST00000334409	NM_005018.2	214	tCa/tAa																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546651	9546651	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	224	629	0	ENST00000353224.5:c.1371A>T	p.Glu457Asp	p.E457D	ENST00000353224	NM_177990.2	457	gaA/gaT																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017234	31017234	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	50	318	0	ENST00000375687.4:c.565G>C	p.Gly189Arg	p.G189R	ENST00000375687	NM_015338.5	189	Ggg/Cgg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31019162	31019162	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	125	684	1	ENST00000375687.4:c.757G>T	p.Glu253Ter	p.E253*	ENST00000375687	NM_015338.5	253	Gag/Tag																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770556	40770556	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	88	613	0	ENST00000373198.4:c.2826del	p.Tyr943ThrfsTer6	p.Y943Tfs*6	ENST00000373198	NM_133170.3	942	tcC/tc																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458454	12458454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	70	727	2	ENST00000287820.6:c.1071G>T	p.Met357Ile	p.M357I	ENST00000287820	NM_015869.4	357	atG/atT																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72842131	72842131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	75	591	0	ENST00000325599.8:c.1117G>T	p.Asp373Tyr	p.D373Y	ENST00000325599	NM_018130.2	373	Gac/Tac																																																																															
BCL6	604	MSKCC	GRCh37	3	187447681	187447681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	49	706	0	ENST00000232014.4:c.512G>T	p.Ser171Ile	p.S171I	ENST00000232014	NM_001130845.1	171	aGc/aTc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66217307	66217307	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	34	366	0	ENST00000273854.3:c.2308G>T	p.Gly770Trp	p.G770W	ENST00000273854	NM_004439.5	770	Ggg/Tgg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627954	187627954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	116	728	0	ENST00000441802.2:c.3028G>T	p.Val1010Phe	p.V1010F	ENST00000441802	NM_005245.3	1010	Gtt/Ttt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679993	30679993	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	195	554	0	ENST00000376406.3:c.1726G>T	p.Asp576Tyr	p.D576Y	ENST00000376406	NM_014641.2	576	Gac/Tac																																																																															
ROS1	6098	MSKCC	GRCh37	6	117645554	117645554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	105	626	0	ENST00000368508.3:c.5582G>T	p.Ser1861Ile	p.S1861I	ENST00000368508	NM_002944.2	1861	aGt/aTt																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138200218	138200218	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	88	580	0	ENST00000237289.4:c.1636G>T	p.Glu546Ter	p.E546*	ENST00000237289	NM_001270507.1	546	Gag/Tag																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962930	2962930	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	422	888	0	ENST00000396946.4:c.1978C>G	p.Arg660Gly	p.R660G	ENST00000396946	NM_032415.4	660	Cgg/Ggg																																																																															
HGF	3082	MSKCC	GRCh37	7	81355212	81355213	+	stop_gained	Nonsense_Mutation	DNP	CA	CA	AT			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	36	343	0	ENST00000222390.5:c.1161_1162delinsAT	p.His387_Gly388delinsGlnTer	p.H387_G388delinsQ*	ENST00000222390	NM_000601.4	387	caTGga/caATga																																																																															
HGF	3082	MSKCC	GRCh37	7	81358944	81358944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	46	601	0	ENST00000222390.5:c.1017G>T	p.Met339Ile	p.M339I	ENST00000222390	NM_000601.4	339	atG/atT																																																																															
HGF	3082	MSKCC	GRCh37	7	81381579	81381579	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	23	319	1	ENST00000222390.5:c.483-1G>T		p.X161_splice	ENST00000222390	NM_000601.4	161																																																																																
HGF	3082	MSKCC	GRCh37	7	81388037	81388037	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	108	721	0	ENST00000222390.5:c.338G>T	p.Gly113Val	p.G113V	ENST00000222390	NM_000601.4	113	gGc/gTc																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152345971	152345971	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	213	680	0	ENST00000359321.1:c.599A>G	p.Gln200Arg	p.Q200R	ENST00000359321	NM_005431.1	200	cAg/cGg																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38162829	38162829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	73	626	0	ENST00000317025.8:c.2377C>T	p.Arg793Cys	p.R793C	ENST00000317025	NM_023034.1	793	Cgc/Tgc																																																																															
PREX2	80243	MSKCC	GRCh37	8	68939487	68939487	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	67	631	0	ENST00000288368.4:c.472A>G	p.Thr158Ala	p.T158A	ENST00000288368	NM_024870.2	158	Aca/Gca																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021727	69021727	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	143	601	3	ENST00000288368.4:c.3015G>T	p.Gln1005His	p.Q1005H	ENST00000288368	NM_024870.2	1005	caG/caT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8376038	8376038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	73	503	0	ENST00000356435.5:c.4559C>A	p.Pro1520His	p.P1520H	ENST00000356435		1520	cCt/cAt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499645	8499645	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	64	452	0	ENST00000356435.5:c.2322+2T>A		p.X774_splice	ENST00000356435		774																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8500843	8500843	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	92	637	0	ENST00000356435.5:c.2039G>T	p.Trp680Leu	p.W680L	ENST00000356435		680	tGg/tTg																																																																															
SYK	6850	MSKCC	GRCh37	9	93650170	93650170	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	42	575	0	ENST00000375746.1:c.1721G>T	p.Arg574Leu	p.R574L	ENST00000375746	NM_001174167.1	574	cGa/cTa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270604	98270604	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	23	105	0	ENST00000331920.6:c.40G>T	p.Gly14Cys	p.G14C	ENST00000331920	NM_000264.3	14	Ggc/Tgc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921559	39921559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	150	770	0	ENST00000378444.4:c.4261C>A	p.Arg1421Ser	p.R1421S	ENST00000378444	NM_001123385.1	1421	Cgc/Agc																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933531	39933531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	63	729	1	ENST00000378444.4:c.1068G>T	p.Glu356Asp	p.E356D	ENST00000378444	NM_001123385.1	356	gaG/gaT																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038745	47038745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	110	731	0	ENST00000329236.7:c.521C>A	p.Thr174Lys	p.T174K	ENST00000329236	NM_001204466.1	174	aCg/aAg																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245149	53245149	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	53	681	1	ENST00000375401.3:c.791G>T	p.Gly264Val	p.G264V	ENST00000375401	NM_004187.3	264	gGg/gTg																																																																															
AMER1	139285	MSKCC	GRCh37	X	63409862	63409862	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	80	503	1	ENST00000330258.3:c.3305A>T	p.Tyr1102Phe	p.Y1102F	ENST00000330258	NM_152424.3	1102	tAt/tTt																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410239	63410239	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	81	720	0	ENST00000330258.3:c.2928C>A	p.Ser976Arg	p.S976R	ENST00000330258	NM_152424.3	976	agC/agA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411463	63411463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	109	881	0	ENST00000330258.3:c.1704G>T	p.Leu568Phe	p.L568F	ENST00000330258	NM_152424.3	568	ttG/ttT																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412468	63412468	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1174	154	832	0	ENST00000330258.3:c.699T>A	p.Asp233Glu	p.D233E	ENST00000330258	NM_152424.3	233	gaT/gaA																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412988	63412988	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	123	843	0	ENST00000330258.3:c.179T>A	p.Phe60Tyr	p.F60Y	ENST00000330258	NM_152424.3	60	tTt/tAt																																																																															
MED12	9968	MSKCC	GRCh37	X	70344161	70344161	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	79	666	0	ENST00000374080.3:c.1897C>G	p.Pro633Ala	p.P633A	ENST00000374080		633	Cct/Gct																																																																															
MED12	9968	MSKCC	GRCh37	X	70360708	70360708	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	15	101	0	ENST00000374080.3:c.6267+1G>T		p.X2089_splice	ENST00000374080		2089																																																																																
ATRX	546	MSKCC	GRCh37	X	76777865	76777865	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	73	514	0	ENST00000373344.5:c.6851G>T	p.Gly2284Val	p.G2284V	ENST00000373344	NM_000489.3	2284	gGa/gTa																																																																															
ATRX	546	MSKCC	GRCh37	X	76891418	76891418	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	104	594	0	ENST00000373344.5:c.4687C>A	p.His1563Asn	p.H1563N	ENST00000373344	NM_000489.3	1563	Cat/Aat																																																																															
XIAP	331	MSKCC	GRCh37	X	123019590	123019590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	92	684	0	ENST00000355640.3:c.78G>T	p.Glu26Asp	p.E26D	ENST00000355640		26	gaG/gaT																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627697	37627698	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1214	67	806	0	ENST00000447079.4:c.1612_1613delinsT	p.Pro538PhefsTer72	p.P538Ffs*72	ENST00000447079	NM_015083.1	538	CCt/Tt																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39573238	39573240	+	missense_variant	Missense_Mutation	ONP	GTG	GTG	TTT			P-0021419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	95	565	4	ENST00000262039.4:c.719_721delinsTTT	p.Gly240_Asp241delinsValTyr	p.G240_D241delinsVY	ENST00000262039	NM_002647.2	240	gGTGat/gTTTat																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	77	554	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																															
APC	324	MSKCC	GRCh37	5	112173947	112173947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	56	513	1	ENST00000257430.4:c.2656C>T	p.Gln886Ter	p.Q886*	ENST00000257430	NM_000038.5	886	Cag/Tag																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120181	70120182	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0021427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	97	642	0	ENST00000245479.2:c.1185_1186dup	p.His396ArgfsTer8	p.H396Rfs*8	ENST00000245479	NM_000346.3	395	acg/aCGcg																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117962	70117963	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0021427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	52	383	0	ENST00000245479.2:c.431+1dup		p.R144fs	ENST00000245479	NM_000346.3	144	aga/aGga																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740668	58740668	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	65	773	1	ENST00000305921.3:c.1573G>T	p.Glu525Ter	p.E525*	ENST00000305921	NM_003620.3	525	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178922363	178922363	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	9	670	0	ENST00000263967.3:c.1132T>C	p.Cys378Arg	p.C378R	ENST00000263967	NM_006218.2	378	Tgt/Cgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581348	48581348	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	61	662	0	ENST00000342988.3:c.653del	p.Pro218LeufsTer23	p.P218Lfs*23	ENST00000342988	NM_005359.5	218	Cct/ct																																																																															
KIT	3815	MSKCC	GRCh37	4	55573285	55573285	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	33	586	0	ENST00000288135.5:c.947T>C	p.Phe316Ser	p.F316S	ENST00000288135	NM_000222.2	316	tTc/tCc																																																																															
APC	324	MSKCC	GRCh37	5	112175778	112175779	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0021427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	41	458	0	ENST00000257430.4:c.4488_4489del	p.Pro1497ArgfsTer16	p.P1497Rfs*16	ENST00000257430	NM_000038.5	1496	aCT/a																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152027813	152027813	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	71	687	2	ENST00000262189.6:c.262C>T	p.Gln88Ter	p.Q88*	ENST00000262189	NM_170606.2	88	Caa/Taa																																																																															
FANCC	2176	MSKCC	GRCh37	9	97912366	97912366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	40	464	0	ENST00000289081.3:c.525G>A	p.Met175Ile	p.M175I	ENST00000289081	NM_000136.2	175	atG/atA																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0021418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	104	272	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32931894	32931894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	131	524	0	ENST00000380152.3:c.7633G>A	p.Val2545Ile	p.V2545I	ENST00000380152		2545	Gtt/Att																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63662128	63662128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	129	582	0	ENST00000279873.7:c.232C>T	p.Leu78Phe	p.L78F	ENST00000279873	NM_032199.2	78	Ctc/Ttc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435253	110435253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	200	500	2	ENST00000375856.3:c.3148G>A	p.Val1050Ile	p.V1050I	ENST00000375856	NM_003749.2	1050	Gtt/Att																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858033	9858033	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	123	710	0	ENST00000330684.3:c.3368A>G	p.Glu1123Gly	p.E1123G	ENST00000330684	NM_001134407.1	1123	gAg/gGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578378	7578392	+	inframe_deletion	In_Frame_Del	DEL	ATCTGAGCAGCGCTC	ATCTGAGCAGCGCTC	-			P-0021418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	306	564	2	ENST00000269305.4:c.538_552delGAGCGCTGCTCAGAT	p.Glu180_Asp184del	p.E180_D184del	ENST00000269305	NM_001126112.2	180	GAGCGCTGCTCAGAT/-																																																																															
CIC	23152	MSKCC	GRCh37	19	42795607	42795607	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	215	821	0	ENST00000575354.2:c.2687C>A	p.Pro896Gln	p.P896Q	ENST00000575354	NM_015125.3	896	cCa/cAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0021475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	106	879	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0021475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	75	790	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	144	843	3	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057229	180057229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	71	743	1	ENST00000261937.6:c.509G>A	p.Arg170His	p.R170H	ENST00000261937	NM_182925.4	170	cGc/cAc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0021462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	18	381	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0021462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	35	359	1	ENST00000412916.2:c.165+1G>T		p.X55_splice	ENST00000412916		55																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151877822	151877822	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	29	341	0	ENST00000262189.6:c.7123C>T	p.Gln2375Ter	p.Q2375*	ENST00000262189	NM_170606.2	2375	Caa/Taa																																																																															
RB1	5925	MSKCC	GRCh37	13	48936983	48936983	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	25	583	1	ENST00000267163.4:c.751C>T	p.Arg251Ter	p.R251*	ENST00000267163	NM_000321.2	251	Cga/Tga																																																																															
AR	367	MSKCC	GRCh37	X	66937372	66937372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	103	541	1	ENST00000374690.3:c.2226G>T	p.Trp742Cys	p.W742C	ENST00000374690	NM_000044.3	742	tgG/tgT																																																																															
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	92	349	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																															
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	39	359	4	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187521299	187521299	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	102	993	1	ENST00000441802.2:c.11856delT	p.Phe3952LeufsTer31	p.F3952Lfs*31	ENST00000441802	NM_005245.3	3952	ttT/tt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022592	31022592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	106	846	1	ENST00000375687.4:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000375687	NM_015338.5	693	Cga/Tga																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149457763	149457763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	156	977	0	ENST00000286301.3:c.641G>A	p.Arg214Gln	p.R214Q	ENST00000286301	NM_005211.3	214	cGg/cAg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11027109	11027109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	169	1284	5	ENST00000327064.4:c.874G>A	p.Val292Ile	p.V292I	ENST00000327064	NM_199141.1	292	Gtc/Atc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425038	49425038	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	198	1214	1	ENST00000301067.7:c.13450C>T	p.Arg4484Ter	p.R4484*	ENST00000301067	NM_003482.3	4484	Cga/Tga																																																																															
TEK	7010	MSKCC	GRCh37	9	27185545	27185545	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	103	1093	0	ENST00000380036.4:c.1250delC	p.Pro417LeufsTer10	p.P417Lfs*10	ENST00000380036	NM_000459.3	415	ctC/ct																																																																															
CARD11	84433	MSKCC	GRCh37	7	2977606	2977606	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	183	1271	3	ENST00000396946.4:c.1078A>G	p.Met360Val	p.M360V	ENST00000396946	NM_032415.4	360	Atg/Gtg																																																																															
ATR	545	MSKCC	GRCh37	3	142242899	142242899	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750252420		P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	56	938	4	ENST00000350721.4:c.4088C>T	p.Ala1363Val	p.A1363V	ENST00000350721	NM_001184.3	1363	gCg/gTg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845702	151845702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	126	904	1	ENST00000262189.6:c.13310C>T	p.Thr4437Met	p.T4437M	ENST00000262189	NM_170606.2	4437	aCg/aTg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16199493	16199493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	72	531	0	ENST00000375759.3:c.266G>A	p.Arg89Gln	p.R89Q	ENST00000375759	NM_015001.2	89	cGg/cAg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120462062	120462062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	144	909	0	ENST00000256646.2:c.5654C>T	p.Ala1885Val	p.A1885V	ENST00000256646	NM_024408.3	1885	gCc/gTc																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246027181	246027181	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	64	753	0	ENST00000388985.4:c.821A>G	p.Asp274Gly	p.D274G	ENST00000388985		274	gAt/gGt																																																																															
BIRC3	330	MSKCC	GRCh37	11	102196003	102196003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	11	521	0	ENST00000263464.3:c.763C>T	p.His255Tyr	p.H255Y	ENST00000263464	NM_001165.4	255	Cat/Tat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49436073	49436073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	87	686	0	ENST00000301067.7:c.5908G>A	p.Asp1970Asn	p.D1970N	ENST00000301067	NM_003482.3	1970	Gac/Aac																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50484150	50484150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	111	948	1	ENST00000394963.4:c.1000C>T	p.Arg334Trp	p.R334W	ENST00000394963	NM_003076.4	334	Cgg/Tgg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118754	115118754	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	116	908	0	ENST00000257566.3:c.587A>G	p.Gln196Arg	p.Q196R	ENST00000257566	NM_016569.3	196	cAg/cGg																																																																															
MGA	23269	MSKCC	GRCh37	15	41991300	41991301	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	53	934	0	ENST00000219905.7:c.2132_2133del	p.Ile711ArgfsTer33	p.I711Rfs*33	ENST00000219905	NM_001164273.1	711	ATa/a																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99478548	99478548	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	93	439	0	ENST00000268035.6:c.3190C>T	p.Arg1064Ter	p.R1064*	ENST00000268035	NM_000875.3	1064	Cga/Tga																																																																															
CYLD	1540	MSKCC	GRCh37	16	50815196	50815196	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	124	894	0	ENST00000398568.2:c.1549G>T	p.Gly517Cys	p.G517C	ENST00000398568	NM_001042412.1	517	Ggc/Tgc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41201169	41201169	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	62	1210	0	ENST00000357654.3:c.5375T>C	p.Val1792Ala	p.V1792A	ENST00000357654	NM_007294.3	1792	gTg/gCg																																																																															
MSI2	124540	MSKCC	GRCh37	17	55729505	55729505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	225	1194	2	ENST00000284073.2:c.773C>T	p.Ala258Val	p.A258V	ENST00000284073	NM_138962.2	258	gCg/gTg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2220185	2220185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	142	1147	1	ENST00000398665.3:c.2770G>A	p.Gly924Ser	p.G924S	ENST00000398665	NM_032482.2	924	Ggt/Agt																																																																															
CIC	23152	MSKCC	GRCh37	19	42793166	42793166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	79	1234	4	ENST00000575354.2:c.1058G>A	p.Arg353Gln	p.R353Q	ENST00000575354	NM_015125.3	353	cGa/cAa																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944413	40944414	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	143	1048	4	ENST00000373198.4:c.2088_2089del	p.Leu698GlufsTer54	p.L698Efs*54	ENST00000373198	NM_133170.3	696	tcTCcc/tccc																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713757	30713757	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	62	648	0	ENST00000359013.4:c.1157T>A	p.Leu386His	p.L386H	ENST00000359013	NM_001024847.2	386	cTc/cAc																																																																															
TP63	8626	MSKCC	GRCh37	3	189612083	189612083	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	142	930	0	ENST00000264731.3:c.1838del	p.Pro613LeufsTer91	p.P613Lfs*91	ENST00000264731	NM_003722.4	612	tCc/tc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467758	66467758	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	35	549	0	ENST00000273854.3:c.511T>C	p.Tyr171His	p.Y171H	ENST00000273854	NM_004439.5	171	Tac/Cac																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39002763	39002763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	14	512	0	ENST00000357387.3:c.266G>A	p.Arg89Gln	p.R89Q	ENST00000357387	NM_152756.3	89	cGg/cAg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432116	121432116	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	119	1053	3	ENST00000257555.6:c.863G>C	p.Gly288Ala	p.G288A	ENST00000257555		288	gGg/gCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0021400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	26	704	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
ATM	472	MSKCC	GRCh37	11	108202634	108202634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	190	600	0	ENST00000278616.4:c.7658C>A	p.Pro2553His	p.P2553H	ENST00000278616	NM_000051.3	2553	cCc/cAc																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125503222	125503222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	170	489	1	ENST00000428830.2:c.589G>A	p.Val197Ile	p.V197I	ENST00000428830	NM_001114121.2	197	Gta/Ata																																																																															
RB1	5925	MSKCC	GRCh37	13	48923102	48923102	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	358	656	1	ENST00000267163.4:c.550G>T	p.Glu184Ter	p.E184*	ENST00000267163	NM_000321.2	184	Gaa/Taa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644940	67644940	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	167	664	1	ENST00000264010.4:c.205A>T	p.Thr69Ser	p.T69S	ENST00000264010	NM_006565.3	69	Acc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0021390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	512	813	1	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39638005	39638005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	203	709	0	ENST00000262039.4:c.2422C>T	p.His808Tyr	p.H808Y	ENST00000262039	NM_002647.2	808	Cac/Tac																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224517	36224517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1297	300	953	0	ENST00000222270.7:c.6979A>G	p.Lys2327Glu	p.K2327E	ENST00000222270	NM_014727.1	2327	Aaa/Gaa																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128028917	128028917	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	243	730	0	ENST00000285398.2:c.1940A>T	p.Lys647Ile	p.K647I	ENST00000285398	NM_000122.1	647	aAa/aTa																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098936	178098936	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	538	582	0	ENST00000397062.3:c.109T>G	p.Phe37Val	p.F37V	ENST00000397062	NM_006164.4	37	Ttt/Gtt																																																																															
CUL3	8452	MSKCC	GRCh37	2	225379374	225379375	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0021390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	377	958	0	ENST00000264414.4:c.493_494del	p.Leu165IlefsTer37	p.L165Ifs*37	ENST00000264414	NM_003590.4	165	CTa/a																																																																															
GNAS	2778	MSKCC	GRCh37	20	57474003	57474003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	302	488	0	ENST00000371085.3:c.220G>A	p.Glu74Lys	p.E74K	ENST00000371085	NM_000516.4	74	Gaa/Aaa																																																																															
ATR	545	MSKCC	GRCh37	3	142212009	142212009	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	416	739	0	ENST00000350721.4:c.6043A>T	p.Asn2015Tyr	p.N2015Y	ENST00000350721	NM_001184.3	2015	Aac/Tac																																																																															
FAT1	2195	MSKCC	GRCh37	4	187535413	187535413	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	464	725	0	ENST00000441802.2:c.9161C>G	p.Ser3054Cys	p.S3054C	ENST00000441802	NM_005245.3	3054	tCt/tGt																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045769	26045769	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	346	596	0	ENST00000540144.1:c.131C>A	p.Pro44Gln	p.P44Q	ENST00000540144	NM_003531.2	44	cCg/cAg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32164103	32164103	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0021390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	227	818	0	ENST00000375023.3:c.5296A>G	p.Arg1766Gly	p.R1766G	ENST00000375023	NM_004557.3	1766	Agg/Ggg																																																																															
CARD11	84433	MSKCC	GRCh37	7	2954915	2954915	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	906	847	1	ENST00000396946.4:c.2795G>T	p.Arg932Leu	p.R932L	ENST00000396946	NM_032415.4	932	cGg/cTg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509848	106509848	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	202	821	0	ENST00000359195.3:c.1842G>T	p.Arg614Ser	p.R614S	ENST00000359195	NM_002649.2	614	agG/agT																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127920550	127920550	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1331	191	752	0	ENST00000373547.4:c.349A>G	p.Arg117Gly	p.R117G	ENST00000373547	NM_002721.4	117	Aga/Gga																																																																															
ABL1	25	MSKCC	GRCh37	9	133760307	133760307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	160	600	0	ENST00000318560.5:c.2630G>T	p.Arg877Met	p.R877M	ENST00000318560	NM_005157.4	877	aGg/aTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0021481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	100	918	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	64	379	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	208	1097	1	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31384605	31384605	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	136	921	0	ENST00000328111.2:c.1307T>C	p.Leu436Ser	p.L436S	ENST00000328111	NM_006892.3	436	tTg/tCg																																																																															
APC	324	MSKCC	GRCh37	5	112173346	112173346	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	38	458	0	ENST00000257430.4:c.2055G>A	p.Trp685Ter	p.W685*	ENST00000257430	NM_000038.5	685	tgG/tgA																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	59	860	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0021472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	116	963	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																															
DICER1	23405	MSKCC	GRCh37	14	95571439	95571439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	29	383	0	ENST00000343455.3:c.3238G>A	p.Val1080Met	p.V1080M	ENST00000343455	NM_177438.2	1080	Gtg/Atg																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17379657	17379657	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	22	599	0	ENST00000359435.4:c.42G>C	p.Glu14Asp	p.E14D	ENST00000359435	NM_001033549.1	14	gaG/gaC																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653835	89653835	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	49	527	0	ENST00000371953.3:c.133delG	p.Val45TyrfsTer9	p.V45Yfs*9	ENST00000371953	NM_000314.4	45	Gta/ta																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180528	56180528	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	51	396	0	ENST00000399503.3:c.3857A>T	p.Glu1286Val	p.E1286V	ENST00000399503	NM_005921.1	1286	gAa/gTa																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0021460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	40	376	0	ENST00000412916.2:c.165+1G>T		p.X55_splice	ENST00000412916		55																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	187	741	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0021354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	270	996	1	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33446177	33446177	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	136	689	0	ENST00000335858.7:c.97del	p.Ser33LeufsTer7	p.S33Lfs*7	ENST00000335858	NM_133629.2	33	Tct/ct																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682386	37682386	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1412	130	689	0	ENST00000447079.4:c.3577G>C	p.Glu1193Gln	p.E1193Q	ENST00000447079	NM_015083.1	1193	Gaa/Caa																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0021399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	60	671	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57480483	57480483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	32	596	3	ENST00000371085.3:c.478C>T	p.Arg160Cys	p.R160C	ENST00000371085	NM_000516.4	160	Cgt/Tgt																																																																															
NF1	4763	MSKCC	GRCh37	17	29509577	29509577	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	46	873	0	ENST00000358273.4:c.782A>G	p.Lys261Arg	p.K261R	ENST00000358273	NM_001042492.2	261	aAa/aGa																																																																															
CIC	23152	MSKCC	GRCh37	19	42797951	42797951	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	88	908	2	ENST00000575354.2:c.4007del	p.Pro1336ArgfsTer3	p.P1336Rfs*3	ENST00000575354	NM_015125.3	1335	Ccc/cc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794922	242794922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	54	964	4	ENST00000334409.5:c.287G>A	p.Arg96His	p.R96H	ENST00000334409	NM_005018.2	96	cGt/cAt																																																																															
MYC	4609	MSKCC	GRCh37	8	128750945	128750945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	20	595	0	ENST00000377970.2:c.482C>T	p.Ser161Leu	p.S161L	ENST00000377970	NM_002467.4	161	tCa/tTa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969496	44969496	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0021461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	21	276	0	ENST00000377967.4:c.4176+2T>G		p.X1392_splice	ENST00000377967	NM_021140.2	1392																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0021356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	32	854	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1129	73	1260	0	ENST00000269305.4:c.389T>G	p.Leu130Arg	p.L130R	ENST00000269305	NM_001126112.2	130	cTc/cGc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0021470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	83	683	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0021470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	123	819	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675997	30675997	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148637924		P-0021470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	85	761	1	ENST00000376406.3:c.2359G>A	p.Gly787Arg	p.G787R	ENST00000376406	NM_014641.2	787	Gga/Aga																																																																															
BRCA2	675	MSKCC	GRCh37	13	32930687	32930687	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	53	583	0	ENST00000380152.3:c.7558C>G	p.Arg2520Gly	p.R2520G	ENST00000380152		2520	Cga/Gga																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619842	1619842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	56	956	0	ENST00000344749.5:c.1104G>T	p.Gln368His	p.Q368H	ENST00000344749	NM_001136139.2	368	caG/caT																																																																															
INSR	3643	MSKCC	GRCh37	19	7267902	7267902	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	16	317	0	ENST00000302850.5:c.106C>G	p.Pro36Ala	p.P36A	ENST00000302850	NM_000208.2	36	Ccc/Gcc																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441196	52441196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	26	358	1	ENST00000460680.1:c.574G>T	p.Asp192Tyr	p.D192Y	ENST00000460680	NM_004656.3	192	Gac/Tac																																																																															
BCL6	604	MSKCC	GRCh37	3	187446328	187446328	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	52	602	0	ENST00000232014.4:c.1360A>G	p.Met454Val	p.M454V	ENST00000232014	NM_001130845.1	454	Atg/Gtg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187629146	187629147	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0021470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	89	607	3	ENST00000441802.2:c.1835_1836delinsCT	p.Leu612Pro	p.L612P	ENST00000441802	NM_005245.3	612	cTG/cCT																																																																															
NSD1	64324	MSKCC	GRCh37	5	176678767	176678767	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	35	627	0	ENST00000439151.2:c.4678G>C	p.Ala1560Pro	p.A1560P	ENST00000439151	NM_022455.4	1560	Gct/Cct																																																																															
LATS1	9113	MSKCC	GRCh37	6	150016210	150016210	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0021470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	33	466	0	ENST00000253339.5:c.496G>T	p.Gly166Trp	p.G166W	ENST00000253339		166	Ggg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0021480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	54	960	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	33	588	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0021480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	42	1062	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654624	67654624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	102	788	0	ENST00000264010.4:c.1111C>T	p.Arg371Cys	p.R371C	ENST00000264010	NM_006565.3	371	Cgc/Tgc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55273029	55273029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	91	977	1	ENST00000275493.2:c.3352G>A	p.Ala1118Thr	p.A1118T	ENST00000275493	NM_005228.3	1118	Gcg/Acg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845814	151845814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	231	1069	0	ENST00000262189.6:c.13198C>T	p.Arg4400Trp	p.R4400W	ENST00000262189	NM_170606.2	4400	Cgg/Tgg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114166	115114166	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	121	988	1	ENST00000257566.3:c.1051C>T	p.Gln351Ter	p.Q351*	ENST00000257566	NM_016569.3	351	Cag/Tag																																																																															
CBFB	865	MSKCC	GRCh37	16	67116106	67116120	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTCTGACAGCAGGA	ATTCTGACAGCAGGA	GTC			P-0021480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	60	557	3	ENST00000412916.2:c.400-10_404delinsGTC		p.X134_splice	ENST00000412916		134																																																																																
AXIN2	8313	MSKCC	GRCh37	17	63533701	63533701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	285	562	1	ENST00000307078.5:c.1453G>A	p.Gly485Ser	p.G485S	ENST00000307078	NM_004655.3	485	Ggc/Agc																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	11627	816	1	ENST00000269571.5:c.2329G>C	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ctg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212288969	212288969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148791072		P-0021363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	135	680	0	ENST00000342788.4:c.2777C>T	p.Thr926Met	p.T926M	ENST00000342788	NM_005235.2	926	aCg/aTg																																																																															
MITF	4286	MSKCC	GRCh37	3	70014076	70014076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	141	606	0	ENST00000352241.4:c.1240C>T	p.Arg414Trp	p.R414W	ENST00000352241	NM_198159.2	414	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175242	112175243	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GATCCTGT			P-0021363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	101	260	0	ENST00000257430.4:c.3954_3961dup	p.Ser1321IlefsTer3	p.S1321Ifs*3	ENST00000257430	NM_000038.5	1317	-/GATCCTGT																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38148131	38148131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	2044	767	0	ENST00000317025.8:c.2980G>A	p.Asp994Asn	p.D994N	ENST00000317025	NM_023034.1	994	Gac/Aac																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021135-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			29	18	609	0				ENST00000310581	NM_198253.2																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021135-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			55	41	445	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913233		P-0021135-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			46	69	851	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021135-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			138	8	487	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0021135-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			104	12	748	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913273		P-0021135-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			55	52	609	0	ENST00000263967.3:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000263967	NM_006218.2	542	Gaa/Caa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578237	7578238	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0021135-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			155	51	773	0	ENST00000269305.4:c.611_612delAG	p.Glu204ValfsTer4	p.E204Vfs*4	ENST00000269305	NM_001126112.2	204	gAG/g																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0021411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	29	619	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
ERG	2078	MSKCC	GRCh37	21	39775467	39775467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	10	768	3	ENST00000288319.7:c.553G>A	p.Ala185Thr	p.A185T	ENST00000288319	NM_182918.3	185	Gcc/Acc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115733	8115734	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATCCAGA			P-0021411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	12	637	0	ENST00000346208.3:c.1081_1088dup	p.Arg364SerfsTer43	p.R364Sfs*43	ENST00000346208		360	ggc/ggCATCCAGAc																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93974394	93974394	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	35	624	0	ENST00000369303.4:c.1660C>A	p.Pro554Thr	p.P554T	ENST00000369303	NM_004440.3	554	Cct/Act																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53247541	53247541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	10	803	0	ENST00000375401.3:c.268G>T	p.Ala90Ser	p.A90S	ENST00000375401	NM_004187.3	90	Gcc/Tcc																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0020540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	353	721	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0020540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	169	740	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																															
CDH1	999	MSKCC	GRCh37	16	68857311	68857312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	99	501	0	ENST00000261769.5:c.1947dup	p.Ile650TyrfsTer13	p.I650Yfs*13	ENST00000261769	NM_004360.3	649	tct/tcTt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160659	56160660	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGCGGGCCAGACT			P-0020540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	88	463	0	ENST00000399503.3:c.934_947dup	p.Tyr317CysfsTer11	p.Y317Cfs*11	ENST00000399503	NM_005921.1	311	-/ATGCGGGCCAGACT																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780828	9780828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	210	823	2	ENST00000377346.4:c.1550G>A	p.Arg517Gln	p.R517Q	ENST00000377346	NM_005026.3	517	cGg/cAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579319	7579348	+	inframe_deletion	In_Frame_Del	DEL	GTCACAGACTTGGCTGTCCCAGAATGCAAG	GTCACAGACTTGGCTGTCCCAGAATGCAAG	-			P-0021381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	446	638	2	ENST00000269305.4:c.339_368del	p.Leu114_Thr123del	p.L114_T123del	ENST00000269305	NM_001126112.2	113	ttCTTGCATTCTGGGACAGCCAAGTCTGTGACt/ttt																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732966	74732966	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	58	345	0	ENST00000359995.5:c.277G>C	p.Gly93Arg	p.G93R	ENST00000359995	NM_001195427.1	93	Ggc/Cgc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78519547	78519547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	256	771	3	ENST00000306801.3:c.118G>A	p.Glu40Lys	p.E40K	ENST00000306801	NM_020761.2	40	Gaa/Aaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	352	745	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	265	846	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581157	48581157	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	156	561	0	ENST00000342988.3:c.461C>G	p.Ser154Ter	p.S154*	ENST00000342988	NM_005359.5	154	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577599	7577599	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	39	806	0	ENST00000269305.4:c.682G>C	p.Asp228His	p.D228H	ENST00000269305	NM_001126112.2	228	Gac/Cac																																																																															
PMS2	5395	MSKCC	GRCh37	7	6048643	6048643	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1310	270	732	0	ENST00000265849.7:c.8G>C	p.Arg3Pro	p.R3P	ENST00000265849	NM_000535.5	3	cGa/cCa																																																																															
ATR	545	MSKCC	GRCh37	3	142242909	142242909	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	300	944	0	ENST00000350721.4:c.4078G>C	p.Glu1360Gln	p.E1360Q	ENST00000350721	NM_001184.3	1360	Gaa/Caa																																																																															
NF1	4763	MSKCC	GRCh37	17	29556049	29556049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	169	456	0	ENST00000358273.4:c.2416G>A	p.Glu806Lys	p.E806K	ENST00000358273	NM_001042492.2	806	Gaa/Aaa																																																																															
JUN	3725	MSKCC	GRCh37	1	59247951	59247951	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	360	993	0	ENST00000371222.2:c.792C>G	p.Ile264Met	p.I264M	ENST00000371222	NM_002228.3	264	atC/atG																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411558	63411558	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	282	992	0	ENST00000330258.3:c.1609G>C	p.Asp537His	p.D537H	ENST00000330258	NM_152424.3	537	Gac/Cac																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180493	94180493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	245	848	2	ENST00000323929.3:c.1675G>A	p.Asp559Asn	p.D559N	ENST00000323929	NM_005591.3	559	Gat/Aat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445077	49445077	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	266	815	0	ENST00000301067.7:c.2389C>G	p.Leu797Val	p.L797V	ENST00000301067	NM_003482.3	797	Ctg/Gtg																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111885825	111885825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	281	1066	1	ENST00000341259.2:c.1447C>T	p.His483Tyr	p.H483Y	ENST00000341259	NM_005475.2	483	Cac/Tac																																																																															
FLT3	2322	MSKCC	GRCh37	13	28601358	28601358	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	178	797	0	ENST00000241453.7:c.2074G>C	p.Glu692Gln	p.E692Q	ENST00000241453	NM_004119.2	692	Gaa/Caa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913391	32913391	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	208	785	1	ENST00000380152.3:c.4899C>G	p.Ile1633Met	p.I1633M	ENST00000380152		1633	atC/atG																																																																															
MGA	23269	MSKCC	GRCh37	15	42042337	42042337	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	266	882	0	ENST00000219905.7:c.6532C>A	p.Leu2178Met	p.L2178M	ENST00000219905	NM_001164273.1	2178	Ctg/Atg																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748549	43748549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	345	1092	3	ENST00000382044.4:c.2257G>A	p.Glu753Lys	p.E753K	ENST00000382044	NM_001141980.1	753	Gaa/Aaa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749104	43749104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	328	1186	3	ENST00000382044.4:c.1702G>A	p.Glu568Lys	p.E568K	ENST00000382044	NM_001141980.1	568	Gaa/Aaa																																																																															
NF1	4763	MSKCC	GRCh37	17	29670100	29670100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	268	831	0	ENST00000358273.4:c.7136G>C	p.Gly2379Ala	p.G2379A	ENST00000358273	NM_001042492.2	2379	gGa/gCa																																																																															
STAT3	6774	MSKCC	GRCh37	17	40485720	40485720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	266	786	0	ENST00000264657.5:c.1020G>C	p.Lys340Asn	p.K340N	ENST00000264657	NM_139276.2	340	aaG/aaC																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966640	25966640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	255	827	1	ENST00000435504.4:c.2566G>A	p.Glu856Lys	p.E856K	ENST00000435504		856	Gag/Aag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163474	47163474	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	169	605	0	ENST00000409792.3:c.2652G>C	p.Gln884His	p.Q884H	ENST00000409792	NM_014159.6	884	caG/caC																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71050137	71050137	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	413	652	1	ENST00000318789.4:c.1048C>T	p.Gln350Ter	p.Q350*	ENST00000318789	NM_032682.5	350	Cag/Tag																																																																															
ATR	545	MSKCC	GRCh37	3	142212003	142212003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	255	926	0	ENST00000350721.4:c.6049G>A	p.Glu2017Lys	p.E2017K	ENST00000350721	NM_001184.3	2017	Gaa/Aaa																																																																															
ATR	545	MSKCC	GRCh37	3	142242864	142242864	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	271	909	0	ENST00000350721.4:c.4123G>T	p.Glu1375Ter	p.E1375*	ENST00000350721	NM_001184.3	1375	Gaa/Taa																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186501413	186501413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	161	508	0	ENST00000323963.5:c.14C>T	p.Ser5Phe	p.S5F	ENST00000323963		5	tCc/tTc																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38952412	38952412	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	156	655	1	ENST00000357387.3:c.3013C>G	p.Pro1005Ala	p.P1005A	ENST00000357387	NM_152756.3	1005	Cca/Gca																																																																															
MSH3	4437	MSKCC	GRCh37	5	79952348	79952348	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	197	649	2	ENST00000265081.6:c.356C>G	p.Ser119Cys	p.S119C	ENST00000265081	NM_002439.4	119	tCt/tGt																																																																															
MSH3	4437	MSKCC	GRCh37	5	80149998	80149998	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	189	831	0	ENST00000265081.6:c.2863G>C	p.Glu955Gln	p.E955Q	ENST00000265081	NM_002439.4	955	Gaa/Caa																																																																															
STK19	8859	MSKCC	GRCh37	6	31940523	31940523	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1184	282	755	0	ENST00000375331.2:c.556G>C	p.Asp186His	p.D186H	ENST00000375331	NM_004197.1	186	Gac/Cac																																																																															
ESR1	2099	MSKCC	GRCh37	6	152332804	152332804	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	272	871	0	ENST00000206249.3:c.1110G>C	p.Leu370Phe	p.L370F	ENST00000206249	NM_000125.3	370	ttG/ttC																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859749	151859749	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	192	632	0	ENST00000262189.6:c.10913C>G	p.Ser3638Ter	p.S3638*	ENST00000262189	NM_170606.2	3638	tCa/tGa																																																																															
PREX2	80243	MSKCC	GRCh37	8	69143608	69143608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	154	524	0	ENST00000288368.4:c.4816G>A	p.Glu1606Lys	p.E1606K	ENST00000288368	NM_024870.2	1606	Gaa/Aaa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139396743	139396743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	210	817	0	ENST00000277541.6:c.5365G>A	p.Glu1789Lys	p.E1789K	ENST00000277541	NM_017617.3	1789	Gag/Aag																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410643	63410643	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	334	1045	2	ENST00000330258.3:c.2524G>C	p.Glu842Gln	p.E842Q	ENST00000330258	NM_152424.3	842	Gag/Cag																																																																															
MED12	9968	MSKCC	GRCh37	X	70347265	70347265	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	276	830	0	ENST00000374080.3:c.2929G>C	p.Asp977His	p.D977H	ENST00000374080		977	Gat/Cat																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152861531	152861531	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	222	840	1	ENST00000406277.2:c.221C>A	p.Ser74Ter	p.S74*	ENST00000406277	NM_152274.4	74	tCa/tAa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0021438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	117	733	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
INSR	3643	MSKCC	GRCh37	19	7141776	7141776	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	217	946	1	ENST00000302850.5:c.2594A>G	p.Asn865Ser	p.N865S	ENST00000302850	NM_000208.2	865	aAc/aGc																																																																															
ALK	238	MSKCC	GRCh37	2	29541192	29541192	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	45	832	0	ENST00000389048.3:c.1625C>G	p.Pro542Arg	p.P542R	ENST00000389048	NM_004304.4	542	cCg/cGg																																																																															
MED12	9968	MSKCC	GRCh37	X	70344938	70344938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	185	973	0	ENST00000374080.3:c.2168G>A	p.Gly723Glu	p.G723E	ENST00000374080		723	gGg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0021285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	22	715	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0021285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	150	528	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	229	523	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012359	152012359	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	123	667	0	ENST00000262189.6:c.454C>T	p.Gln152Ter	p.Q152*	ENST00000262189	NM_170606.2	152	Caa/Taa																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399444	139399444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	312	1060	4	ENST00000277541.6:c.4699G>A	p.Glu1567Lys	p.E1567K	ENST00000277541	NM_017617.3	1567	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	80	813	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0021347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	60	891	3	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285796	46285796	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0021347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	70	471	0	ENST00000334344.6:c.5064del	p.Asp1688GlufsTer13	p.D1688Efs*13	ENST00000334344	NM_152641.2	1688	gaT/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578471	7578482	+	inframe_deletion	In_Frame_Del	DEL	GGGCGGGGGTGT	GGGCGGGGGTGT	-			P-0021347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	151	937	2	ENST00000269305.4:c.448_459del	p.Thr150_Pro153del	p.T150_P153del	ENST00000269305	NM_001126112.2	150	ACACCCCCGCCC/-																																																																															
TET2	54790	MSKCC	GRCh37	4	106193800	106193800	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	46	479	0	ENST00000380013.4:c.4262A>G	p.Tyr1421Cys	p.Y1421C	ENST00000380013	NM_001127208.2	1421	tAc/tGc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	53	964	2	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602799	10602799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	55	1004	1	ENST00000171111.5:c.779G>T	p.Arg260Leu	p.R260L	ENST00000171111	NM_203500.1	260	cGa/cTa																																																																															
FH	2271	MSKCC	GRCh37	1	241680562	241680562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	57	1076	1	ENST00000366560.3:c.187C>T	p.Pro63Ser	p.P63S	ENST00000366560	NM_000143.3	63	Cca/Tca																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186506963	186506964	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCTTC			P-0021191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	29	491	0	ENST00000323963.5:c.1130_1131insCTTCT	p.Thr378PhefsTer26	p.T378Ffs*26	ENST00000323963		377	gtt/gTCTTCtt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57480483	57480483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	116	616	1	ENST00000371085.3:c.478C>T	p.Arg160Cys	p.R160C	ENST00000371085	NM_000516.4	160	Cgt/Tgt																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42843761	42843761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	37	1039	1	ENST00000398585.3:c.1158G>A	p.Met386Ile	p.M386I	ENST00000398585	NM_001135099.1	386	atG/atA																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	116	792	0	ENST00000347630.2:c.392G>C	p.Trp131Ser	p.W131S	ENST00000347630	NM_001007230.1	131	tGg/tCg																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413973	139413973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	197	1008	0	ENST00000277541.6:c.787G>C	p.Gly263Arg	p.G263R	ENST00000277541	NM_017617.3	263	Gga/Cga																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	39	685	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																															
LATS2	26524	MSKCC	GRCh37	13	21619923	21619923	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	49	940	0	ENST00000382592.4:c.243A>C	p.Arg81Ser	p.R81S	ENST00000382592	NM_014572.2	81	agA/agC																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435403	110435403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	54	1147	3	ENST00000375856.3:c.2998G>A	p.Gly1000Ser	p.G1000S	ENST00000375856	NM_003749.2	1000	Ggc/Agc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221334	1221334	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	41	919	0	ENST00000326873.7:c.857T>C	p.Leu286Pro	p.L286P	ENST00000326873	NM_000455.4	286	cTg/cCg																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645684	12645684	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	26	339	0	ENST00000251849.4:c.785A>G	p.Asn262Ser	p.N262S	ENST00000251849	NM_002880.3	262	aAt/aGt																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0021341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	392	760	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0021341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	604	1043	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0021341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	423	900	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	228	753	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0021273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	228	959	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575671	48575671	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	162	679	0	ENST00000342988.3:c.431C>G	p.Ser144Ter	p.S144*	ENST00000342988	NM_005359.5	144	tCa/tGa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0021196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	145	818	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0021196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	8	509	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89498465	89498465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	51	595	1	ENST00000336596.2:c.2437G>T	p.Val813Phe	p.V813F	ENST00000336596	NM_005233.5	813	Gtt/Ttt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249007	+	missense_variant	Missense_Mutation	ONP	GCG	GCG	TCC			P-0021196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	327	690	1	ENST00000275493.2:c.2303_2305delinsTCC	p.Ser768_Val769delinsIleLeu	p.S768_V769delinsIL	ENST00000275493	NM_005228.3	768	aGCGtg/aTCCtg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355961	73355961	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	165	923	0	ENST00000377767.4:c.10T>G	p.Ser4Ala	p.S4A	ENST00000377767	NM_014953.3	4	Tcc/Gcc																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279352	18279352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	68	744	1	ENST00000222254.8:c.1804G>A	p.Glu602Lys	p.E602K	ENST00000222254	NM_005027.3	602	Gag/Aag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	49	781	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0021373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	48	539	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579394	7579394	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	56	910	0	ENST00000269305.4:c.293del	p.Pro98LeufsTer25	p.P98Lfs*25	ENST00000269305	NM_001126112.2	98	cCt/ct																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39637974	39637974	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	56	826	0	ENST00000262039.4:c.2391G>C	p.Glu797Asp	p.E797D	ENST00000262039	NM_002647.2	797	gaG/gaC																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604626	48604629	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GTCT	GTCT	-			P-0021373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	18	318	0	ENST00000342988.3:c.1451_1454del	p.Leu484GlnfsTer19	p.L484Qfs*19	ENST00000342988	NM_005359.5	483	aGTCTg/ag																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39074231	39074231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	110	714	1	ENST00000357387.3:c.79C>T	p.Pro27Ser	p.P27S	ENST00000357387	NM_152756.3	27	Ccg/Tcg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437578	56437578	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	132	819	0	ENST00000407977.2:c.884A>G	p.His295Arg	p.H295R	ENST00000407977		295	cAt/cGt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	179	687	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011152	12011152	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0021437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	168	599	1	ENST00000353533.5:c.559A>T	p.Lys187Ter	p.K187*	ENST00000353533	NM_003010.3	187	Aag/Tag																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974793	15974794	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	168	546	0	ENST00000268712.3:c.4081dup	p.Thr1361AsnfsTer19	p.T1361Nfs*19	ENST00000268712	NM_006311.3	1361	act/aAct																																																																															
SRC	6714	MSKCC	GRCh37	20	36012737	36012747	+	frameshift_variant	Frame_Shift_Del	DEL	CCCAAGCTGTT	CCCAAGCTGTT	-			P-0021437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	40	318	0	ENST00000358208.4:c.182_192del	p.Pro61ArgfsTer30	p.P61Rfs*30	ENST00000358208		61	CCCAAGCTGTTc/c																																																																															
STK11	6794	MSKCC	GRCh37	19	1220578	1220578	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0021442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	521	769	0	ENST00000326873.7:c.598-2A>G		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																																
RIT1	6016	MSKCC	GRCh37	1	155874286	155874286	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	808	593	0	ENST00000368323.3:c.245T>G	p.Phe82Cys	p.F82C	ENST00000368323	NM_006912.5	82	tTt/tGt																																																																															
AKT3	10000	MSKCC	GRCh37	1	243668583	243668583	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	369	641	0	ENST00000263826.5:c.1408C>T	p.Gln470Ter	p.Q470*	ENST00000263826	NM_005465.4	470	Caa/Taa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624268	89624268	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	330	497	1	ENST00000371953.3:c.42G>T	p.Arg14Ser	p.R14S	ENST00000371953	NM_000314.4	14	agG/agT																																																																															
ATM	472	MSKCC	GRCh37	11	108119752	108119752	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	125	335	0	ENST00000278616.4:c.1158G>T	p.Arg386Ser	p.R386S	ENST00000278616	NM_000051.3	386	agG/agT																																																																															
CBL	867	MSKCC	GRCh37	11	119077161	119077161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	250	641	0	ENST00000264033.4:c.34G>T	p.Gly12Trp	p.G12W	ENST00000264033	NM_005188.3	12	Ggg/Tgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610523	10610523	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	605	884	0	ENST00000171111.5:c.187del	p.Ala63ProfsTer5	p.A63Pfs*5	ENST00000171111	NM_203500.1	63	Gcc/cc																																																																															
EP300	2033	MSKCC	GRCh37	22	41513326	41513326	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	238	723	1	ENST00000263253.7:c.230A>T	p.Lys77Ile	p.K77I	ENST00000263253	NM_001429.3	77	aAa/aTa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47061306	47061306	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	346	591	1	ENST00000409792.3:c.7375G>T	p.Glu2459Ter	p.E2459*	ENST00000409792	NM_014159.6	2459	Gaa/Taa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187519270	187519270	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	198	606	1	ENST00000441802.2:c.12113G>T	p.Cys4038Phe	p.C4038F	ENST00000441802	NM_005245.3	4038	tGc/tTc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513565	149513565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	227	639	0	ENST00000261799.4:c.638C>T	p.Ser213Phe	p.S213F	ENST00000261799	NM_002609.3	213	tCc/tTc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412937	63412937	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	343	974	0	ENST00000330258.3:c.230G>C	p.Arg77Pro	p.R77P	ENST00000330258	NM_152424.3	77	cGg/cCg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	229	965	0	ENST00000269305.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTc/aCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916924	178916926	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0021374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	602	763	0	ENST00000263967.3:c.311_313del	p.Pro104_Val105delinsLeu	p.P104_V105delinsL	ENST00000263967	NM_006218.2	104	cCAGta/cta																																																																															
JAK1	3716	MSKCC	GRCh37	1	65303790	65303790	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0021270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	85	386	1	ENST00000342505.4:c.2968-3C>T		p.X990_splice	ENST00000342505	NM_002227.2	990																																																																																
GLI1	2735	MSKCC	GRCh37	12	57864118	57864118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200306754		P-0021270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	192	691	0	ENST00000228682.2:c.1595G>A	p.Arg532His	p.R532H	ENST00000228682	NM_005269.2	532	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0021270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	640	762	1	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																															
YES1	7525	MSKCC	GRCh37	18	732902	732902	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	271	747	1	ENST00000314574.4:c.1355del	p.Lys452SerfsTer14	p.K452Sfs*14	ENST00000314574	NM_005433.3	452	aAg/ag																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31504729	31504729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	709	684	2	ENST00000344624.3:c.1601C>T	p.Pro534Leu	p.P534L	ENST00000344624		534	cCa/cTa																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497196	149497196	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	110	571	1	ENST00000261799.4:c.3122C>A	p.Ser1041Tyr	p.S1041Y	ENST00000261799	NM_002609.3	1041	tCc/tAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0021270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	979	653	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921606	39921606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	136	362	0	ENST00000378444.4:c.4214C>T	p.Ser1405Leu	p.S1405L	ENST00000378444	NM_001123385.1	1405	tCg/tTg																																																																															
STAG2	10735	MSKCC	GRCh37	X	123227950	123227950	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	125	310	0	ENST00000218089.9:c.3661G>T	p.Asp1221Tyr	p.D1221Y	ENST00000218089	NM_001042749.1	1221	Gat/Tat																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411202	63411202	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	251	878	0	ENST00000330258.3:c.1965G>T	p.Gln655His	p.Q655H	ENST00000330258	NM_152424.3	655	caG/caT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0021193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	286	756	0	ENST00000269305.4:c.673-1G>C		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
TSHR	7253	MSKCC	GRCh37	14	81422058	81422059	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	218	623	0	ENST00000298171.2:c.35dup	p.Leu13AlafsTer49	p.L13Afs*49	ENST00000298171	NM_000369.2	12	ctg/cTtg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857896	9857896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	577	719	1	ENST00000330684.3:c.3505C>T	p.Arg1169Trp	p.R1169W	ENST00000330684	NM_001134407.1	1169	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108098601	108098601	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	216	384	0	ENST00000278616.4:c.171G>T	p.Trp57Cys	p.W57C	ENST00000278616	NM_000051.3	57	tgG/tgT																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	229	745	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0021352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	316	1104	3	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55266440	55266440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	223	897	0	ENST00000275493.2:c.2732G>C	p.Gly911Ala	p.G911A	ENST00000275493	NM_005228.3	911	gGa/gCa																																																																															
KDR	3791	MSKCC	GRCh37	4	55968633	55968633	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200338299		P-0021352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	234	991	2	ENST00000263923.4:c.2030C>T	p.Thr677Met	p.T677M	ENST00000263923	NM_002253.2	677	aCg/aTg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432086	121432086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	272	1058	0	ENST00000257555.6:c.833G>A	p.Arg278Gln	p.R278Q	ENST00000257555		278	cGg/cAg																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720866	89720887	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAATTTTAAGGTCAGTTAAATT	AAATTTTAAGGTCAGTTAAATT	-			P-0021352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	26	611	0	ENST00000371953.3:c.1020_1026+15del		p.X340_splice	ENST00000371953	NM_000314.4	340																																																																																
PTPN11	5781	MSKCC	GRCh37	12	112940014	112940014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	273	1139	2	ENST00000351677.2:c.1666G>T	p.Asp556Tyr	p.D556Y	ENST00000351677	NM_002834.3	556	Gat/Tat																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928201	178928236	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTCTTCCATCTCTTAGGAAACTCCATGCTTAGAG	TTTTCTTCCATCTCTTAGGAAACTCCATGCTTAGAG	-			P-0021352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	96	489	0	ENST00000263967.3:c.1405-16_1424del		p.X469_splice	ENST00000263967	NM_006218.2	469																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67588147	67588148	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0021352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	91	529	0	ENST00000274335.5:c.978_979del	p.Met326IlefsTer6	p.M326Ifs*6	ENST00000274335		326	aTG/a																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98248121	98248121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	182	788	2	ENST00000331920.6:c.430C>T	p.Arg144Cys	p.R144C	ENST00000331920	NM_000264.3	144	Cgc/Tgc																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152858044	152858044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	169	594	4	ENST00000406277.2:c.571G>A	p.Val191Met	p.V191M	ENST00000406277	NM_152274.4	191	Gtg/Atg																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0021444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	96	607	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	168	464	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552611	18552612	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0021444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	104	522	0	ENST00000266497.5:c.2024_2025dup	p.Tyr676AspfsTer19	p.Y676Dfs*19	ENST00000266497		674	-/AG																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879059	151879059	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	118	699	0	ENST00000262189.6:c.5886del	p.Tyr1963MetfsTer11	p.Y1963Mfs*11	ENST00000262189	NM_170606.2	1962	ccC/cc																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729997	41729997	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	97	682	0	ENST00000242208.4:c.532C>T	p.Gln178Ter	p.Q178*	ENST00000242208	NM_002192.2	178	Cag/Tag																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254813	16254813	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	40	595	0	ENST00000375759.3:c.2078G>T	p.Arg693Met	p.R693M	ENST00000375759	NM_015001.2	693	aGg/aTg																																																																															
CDH1	999	MSKCC	GRCh37	16	68847340	68847341	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0020997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	121	656	0	ENST00000261769.5:c.1262_1263del	p.Gly421AlafsTer24	p.G421Afs*24	ENST00000261769	NM_004360.3	421	gGA/g																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011118	12011118	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	84	520	0	ENST00000353533.5:c.525G>A	p.Trp175Ter	p.W175*	ENST00000353533	NM_003010.3	175	tgG/tgA																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475126	40475126	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	33	663	0	ENST00000264657.5:c.1784G>C	p.Arg595Pro	p.R595P	ENST00000264657	NM_139276.2	595	cGg/cCg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23632778	23632778	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TA			P-0020997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	47	573	0	ENST00000261584.4:c.3018delinsTA	p.Leu1006PhefsTer5	p.L1006Ffs*5	ENST00000261584	NM_024675.3	1006	ttG/ttTA																																																																															
POLE	5426	MSKCC	GRCh37	12	133249237	133249237	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	47	642	1	ENST00000320574.5:c.1662C>A	p.Ser554Arg	p.S554R	ENST00000320574	NM_006231.2	554	agC/agA																																																																															
PREX2	80243	MSKCC	GRCh37	8	68995482	68995482	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	26	721	0	ENST00000288368.4:c.1886G>T	p.Gly629Val	p.G629V	ENST00000288368	NM_024870.2	629	gGc/gTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0021194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	10	814	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0021194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	113	1014	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16062187	16062187	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0021194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	106	812	1	ENST00000268712.3:c.619C>T	p.Gln207Ter	p.Q207*	ENST00000268712	NM_006311.3	207	Caa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	85	504	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
CDH1	999	MSKCC	GRCh37	16	68845616	68845616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	146	896	1	ENST00000261769.5:c.862G>A	p.Asp288Asn	p.D288N	ENST00000261769	NM_004360.3	288	Gac/Aac																																																																															
ABL1	25	MSKCC	GRCh37	9	133760678	133760678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	193	1445	2	ENST00000318560.5:c.3001G>A	p.Ala1001Thr	p.A1001T	ENST00000318560	NM_005157.4	1001	Gcc/Acc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0021334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	305	994	5	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	18	940	0	ENST00000263967.3:c.1634A>C	p.Glu545Ala	p.E545A	ENST00000263967	NM_006218.2	545	gAg/gCg																																																																															
MSH2	4436	MSKCC	GRCh37	2	47702205	47702205	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	183	777	0	ENST00000233146.2:c.1801C>T	p.Gln601Ter	p.Q601*	ENST00000233146	NM_000251.2	601	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221320	1221320	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	88	989	0	ENST00000326873.7:c.843delG	p.Leu282SerfsTer5	p.L282Sfs*5	ENST00000326873	NM_000455.4	281	ccG/cc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18435578	18435578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	24	505	1	ENST00000266497.5:c.563C>T	p.Pro188Leu	p.P188L	ENST00000266497		188	cCg/cTg																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175916366	175916366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	40	525	0	ENST00000367669.3:c.2143G>T	p.Val715Leu	p.V715L	ENST00000367669	NM_022457.5	715	Gtg/Ttg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136034	64136034	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	62	975	0	ENST00000334205.4:c.1295A>G	p.Gln432Arg	p.Q432R	ENST00000334205	NM_003942.2	432	cAg/cGg																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118348769	118348769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	42	643	0	ENST00000534358.1:c.3422C>T	p.Pro1141Leu	p.P1141L	ENST00000534358	NM_005933.3	1141	cCc/cTc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680635	88680635	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0021367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	34	609	0	ENST00000360948.2:c.622G>T	p.Asp208Tyr	p.D208Y	ENST00000360948	NM_001012338.2	208	Gac/Tac																																																																															
TOP1	7150	MSKCC	GRCh37	20	39750720	39750720	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	29	502	1	ENST00000361337.2:c.2120A>T	p.Asp707Val	p.D707V	ENST00000361337	NM_003286.2	707	gAc/gTc																																																																															
APC	324	MSKCC	GRCh37	5	112175604	112175604	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	27	555	0	ENST00000257430.4:c.4313C>G	p.Thr1438Arg	p.T1438R	ENST00000257430	NM_000038.5	1438	aCa/aGa																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94068105	94068105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	22	514	0	ENST00000369303.4:c.857C>G	p.Ser286Cys	p.S286C	ENST00000369303	NM_004440.3	286	tCt/tGt																																																																															
AGO2	27161	MSKCC	GRCh37	8	141566315	141566315	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	47	823	0	ENST00000220592.5:c.1097G>T	p.Arg366Ile	p.R366I	ENST00000220592	NM_012154.3	366	aGa/aTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0021003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	5262	632	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	634	822	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48916766	48916766	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	269	668	0	ENST00000267163.4:c.299del	p.Gly100GlufsTer11	p.G100Efs*11	ENST00000267163	NM_000321.2	99	tGg/tg																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73346352	73346352	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	257	581	1	ENST00000377767.4:c.1448G>T	p.Cys483Phe	p.C483F	ENST00000377767	NM_014953.3	483	tGt/tTt																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16075190	16075190	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	394	491	1	ENST00000268712.3:c.362G>T	p.Arg121Leu	p.R121L	ENST00000268712	NM_006311.3	121	cGt/cTt																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81350082	81350082	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	289	524	0	ENST00000222390.5:c.1250A>G	p.Lys417Arg	p.K417R	ENST00000222390	NM_000601.4	417	aAg/aGg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	91	841	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
KMT2B	9757	MSKCC	GRCh37	19	36219939	36219939	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	69	811	0	ENST00000222270.7:c.4741T>C	p.Cys1581Arg	p.C1581R	ENST00000222270	NM_014727.1	1581	Tgt/Cgt																																													NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35871306	35871306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	24	443	0	ENST00000303115.3:c.528C>A	p.Asn176Lys	p.N176K	ENST00000303115	NM_002185.3	176	aaC/aaA																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	189	637	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0021002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	233	695	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67482874	67482874	+	stop_lost	Nonstop_Mutation	SNP	G	G	T			P-0021002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	198	410	0	ENST00000327367.4:c.1278G>T	p.Ter426TyrextTer6	p.*426Yext*6	ENST00000327367	NM_005902.3	426	taG/taT																																													NEWRECORD																																		
IGF1	3479	MSKCC	GRCh37	12	102811753	102811753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	182	745	1	ENST00000307046.8:c.431C>T	p.Thr144Met	p.T144M	ENST00000307046	NM_001111285.1	144	aCg/aTg																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157502183	157502183	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	72	482	0	ENST00000346085.5:c.3216G>T	p.Trp1072Cys	p.W1072C	ENST00000346085	NM_020732.3	1072	tgG/tgT																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971178	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0021002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	372	523	2	ENST00000304494.5:c.180_181delinsTT	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	60	gcGGag/gcTTag																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115120881	115120881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	28	457	0	ENST00000257566.3:c.125C>T	p.Pro42Leu	p.P42L	ENST00000257566	NM_016569.3	42	cCc/cTc																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0021295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	3013	878	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0021295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	2507	782	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7576853	7576853	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs11575996		P-0021295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	360	821	0	ENST00000269305.4:c.993G>T	p.Gln331His	p.Q331H	ENST00000269305	NM_001126112.2	331	caG/caT																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120460296	120460296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	64	765	1	ENST00000256646.2:c.6019G>A	p.Asp2007Asn	p.D2007N	ENST00000256646	NM_024408.3	2007	Gac/Aac																																													NEWRECORD																																		
SUFU	51684	MSKCC	GRCh37	10	104375118	104375118	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	39	853	0	ENST00000369902.3:c.1116A>T	p.Lys372Asn	p.K372N	ENST00000369902	NM_016169.3	372	aaA/aaT																																													NEWRECORD																																		
MAX	4149	MSKCC	GRCh37	14	65543330	65543330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	62	723	1	ENST00000358664.4:c.347C>T	p.Pro116Leu	p.P116L	ENST00000358664	NM_002382.4	116	cCc/cTc																																													NEWRECORD																																		
FGFR4	2264	MSKCC	GRCh37	5	176523142	176523142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	31	959	1	ENST00000292408.4:c.1906G>A	p.Gly636Ser	p.G636S	ENST00000292408	NM_213647.1	636	Ggc/Agc																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249092	55249092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3478	304	904	0	ENST00000275493.2:c.2390G>C	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	tGc/tCc																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151882692	151882692	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	31	554	0	ENST00000262189.6:c.5033T>C	p.Ile1678Thr	p.I1678T	ENST00000262189	NM_170606.2	1678	aTt/aCt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	123	772	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0021232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	74	753	2	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	182	465	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0021232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	276	961	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89351412	89351412	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	141	838	0	ENST00000301030.4:c.1538C>A	p.Ser513Tyr	p.S513Y	ENST00000301030	NM_001256183.1	513	tCc/tAc																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38991161	38991161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	94	748	0	ENST00000357387.3:c.473C>T	p.Ala158Val	p.A158V	ENST00000357387	NM_152756.3	158	gCt/gTt																																													NEWRECORD																																		
PREX2	80243	MSKCC	GRCh37	8	68950518	68950518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	78	590	1	ENST00000288368.4:c.830G>T	p.Arg277Ile	p.R277I	ENST00000288368	NM_024870.2	277	aGa/aTa																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	131	673	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0021218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	31	488	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																													NEWRECORD																																		
DAXX	1616	MSKCC	GRCh37	6	33286830	33286830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	166	648	0	ENST00000374542.5:c.2107C>T	p.Pro703Ser	p.P703S	ENST00000374542	NM_001141970.1	703	Cca/Tca																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151877199	151877200	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	179	572	0	ENST00000262189.6:c.7161dup	p.Arg2388ThrfsTer2	p.R2388Tfs*2	ENST00000262189	NM_170606.2	2387	-/A																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0021236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	150	935	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
EIF1AX	1964	MSKCC	GRCh37	X	20159748	20159748	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	57	648	0	ENST00000379607.5:c.11A>G	p.Asn4Ser	p.N4S	ENST00000379607	NM_001412.3	4	aAt/aGt																																													NEWRECORD																																		
CYSLTR2	57105	MSKCC	GRCh37	13	49281768	49281768	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148425155		P-0021236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	105	902	1	ENST00000282018.3:c.815C>T	p.Thr272Met	p.T272M	ENST00000282018	NM_020377.2	272	aCg/aTg																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31021451	31021451	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	44	799	0	ENST00000375687.4:c.1450G>T	p.Glu484Ter	p.E484*	ENST00000375687	NM_015338.5	484	Gag/Tag																																													NEWRECORD																																		
INHBA	3624	MSKCC	GRCh37	7	41739657	41739657	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	128	1105	0	ENST00000242208.4:c.316G>T	p.Asp106Tyr	p.D106Y	ENST00000242208	NM_002192.2	106	Gac/Tac																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	29004254	29004254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143093353		P-0021240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	108	763	3	ENST00000282397.4:c.1039G>A	p.Val347Ile	p.V347I	ENST00000282397	NM_002019.4	347	Gta/Ata																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578433	7578434	+	stop_gained	Nonsense_Mutation	INS	-	-	ACTGCT			P-0021240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	379	1010	0	ENST00000269305.4:c.491_496dup	p.Gln165_Ser166insTer	p.Q165_S166ins*	ENST00000269305	NM_001126112.2	166	tca/tAGCAGTca																																													NEWRECORD																																		
FAM175A	84142	MSKCC	GRCh37	4	84383862	84383863	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0021240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	117	1043	0	ENST00000321945.7:c.989_990del	p.Thr330ArgfsTer4	p.T330Rfs*4	ENST00000321945	NM_139076.2	330	aCT/a																																													NEWRECORD																																		
RAD21	5885	MSKCC	GRCh37	8	117862980	117862981	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0021240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	153	863	0	ENST00000297338.2:c.1496_1497del	p.Ile499ThrfsTer37	p.I499Tfs*37	ENST00000297338	NM_006265.2	499	aTA/a																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0021224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	105	916	3	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1207076	1207077	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	351	944	0	ENST00000326873.7:c.169dup	p.Glu57GlyfsTer106	p.E57Gfs*106	ENST00000326873	NM_000455.4	55	ctg/ctGg																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2226424	2226424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	666	941	0	ENST00000398665.3:c.3904G>T	p.Gly1302Trp	p.G1302W	ENST00000398665	NM_032482.2	1302	Ggg/Tgg																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47058697	47058709	+	frameshift_variant	Frame_Shift_Del	DEL	AGGATTCTTACAG	AGGATTCTTACAG	-			P-0021224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	48	852	0	ENST00000409792.3:c.7569_7581del	p.Tyr2523Ter	p.Y2523*	ENST00000409792	NM_014159.6	2523	taCTGTAAGAATCCT/ta																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55968622	55968622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	46	1035	0	ENST00000263923.4:c.2041G>A	p.Gly681Arg	p.G681R	ENST00000263923	NM_002253.2	681	Ggg/Agg																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180048793	180048793	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	172	989	1	ENST00000261937.6:c.1769G>A	p.Trp590Ter	p.W590*	ENST00000261937	NM_182925.4	590	tGg/tAg																																													NEWRECORD																																		
TAP2	6891	MSKCC	GRCh37	6	32797769	32797769	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs78328107		P-0021238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	47	1009	3	ENST00000374899.4:c.1733C>T	p.Ala578Val	p.A578V	ENST00000374899	NM_018833.2	578	gCg/gTg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108216588	108216592	+	protein_altering_variant	In_Frame_Del	DEL	TTGAG	TTGAG	AT			P-0021239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	101	601	2	ENST00000278616.4:c.8537_8541delinsAT	p.Phe2846_Glu2847delinsTyr	p.F2846_E2847delinsY	ENST00000278616	NM_000051.3	2846	tTTGAG/tAT																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42021492	42021492	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	106	933	0	ENST00000219905.7:c.3788C>A	p.Ser1263Ter	p.S1263*	ENST00000219905	NM_001164273.1	1263	tCa/tAa																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68846086	68846086	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	101	903	2	ENST00000261769.5:c.1057G>T	p.Glu353Ter	p.E353*	ENST00000261769	NM_004360.3	353	Gag/Tag																																													NEWRECORD																																		
RHEB	6009	MSKCC	GRCh37	7	151168677	151168751	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTAATCACTTCAAAACTATAAAACAAAAAGTATAAATTAGACATCCATTTTAATGTTGAAGTTTTTAAATGTATG	TTAATCACTTCAAAACTATAAAACAAAAAGTATAAATTAGACATCCATTTTAATGTTGAAGTTTTTAAATGTATG	-			P-0021239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	71	589	0	ENST00000262187.5:c.276-60_290del		p.X92_splice	ENST00000262187	NM_005614.3	92																																														NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115947	8115951	+	frameshift_variant	Frame_Shift_Del	DEL	ACCAC	ACCAC	-			P-0021242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	88	636	0	ENST00000346208.3:c.1298_1302del	p.His433ProfsTer72	p.H433Pfs*72	ENST00000346208		431	ggACCACac/ggac																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	11984779	11984783	+	frameshift_variant	Frame_Shift_Del	DEL	GGACG	GGACG	-			P-0021242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	73	625	0	ENST00000353533.5:c.325_329del	p.Gly109ArgfsTer21	p.G109Rfs*21	ENST00000353533	NM_003010.3	109	GGACGa/a																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39933889	39933889	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	213	906	0	ENST00000378444.4:c.710T>A	p.Val237Asp	p.V237D	ENST00000378444	NM_001123385.1	237	gTc/gAc																																													NEWRECORD																																		
HIST1H3B	8358	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	35	621	0	ENST00000244661.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000244661	NM_003537.3	106	Gag/Cag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	150	931	1	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212248768	212248768	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	38	410	0	ENST00000342788.4:c.3499G>T	p.Glu1167Ter	p.E1167*	ENST00000342788	NM_005235.2	1167	Gag/Tag																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108115595	108115595	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	112	911	0	ENST00000278616.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000278616	NM_000051.3	248	cGa/cTa																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	41988819	41988820	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0021227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	97	888	0	ENST00000219905.7:c.1611_1612del	p.Arg538SerfsTer17	p.R538Sfs*17	ENST00000219905	NM_001164273.1	537	ctCAga/ctga																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25463286	25463286	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	58	684	0	ENST00000264709.3:c.2207G>T	p.Arg736Leu	p.R736L	ENST00000264709	NM_175629.2	736	cGc/cTc																																													NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215593408	215593408	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	18	375	0	ENST00000260947.4:c.2326G>C	p.Asp776His	p.D776H	ENST00000260947	NM_000465.2	776	Gac/Cac																																													NEWRECORD																																		
KIT	3815	MSKCC	GRCh37	4	55594016	55594016	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	49	694	2	ENST00000288135.5:c.1802G>T	p.Gly601Val	p.G601V	ENST00000288135	NM_000222.2	601	gGg/gTg																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47038844	47038844	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	92	968	0	ENST00000329236.7:c.622del	p.Gln208LysfsTer23	p.Q208Kfs*23	ENST00000329236	NM_001204466.1	207	tCc/tc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0021230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	127	857	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																													NEWRECORD																																		
FGFR2	2263	MSKCC	GRCh37	10	123256174	123256174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	24	858	7	ENST00000358487.5:c.1735C>T	p.Arg579Trp	p.R579W	ENST00000358487	NM_000141.4	579	Cgg/Tgg																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48603007	48603007	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0021228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	20	514	0	ENST00000342988.3:c.1309-1G>T		p.X437_splice	ENST00000342988	NM_005359.5	437																																														NEWRECORD																																		
ERF	2077	MSKCC	GRCh37	19	42753432	42753432	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	63	856	0	ENST00000222329.4:c.832A>G	p.Thr278Ala	p.T278A	ENST00000222329	NM_006494.2	278	Act/Gct																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022629	31022629	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	77	953	1	ENST00000375687.4:c.2114A>G	p.Glu705Gly	p.E705G	ENST00000375687	NM_015338.5	705	gAg/gGg																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38958606	38958606	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	15	414	0	ENST00000357387.3:c.2359C>G	p.Leu787Val	p.L787V	ENST00000357387	NM_152756.3	787	Ctc/Gtc																																													NEWRECORD																																		
TRAF2	7186	MSKCC	GRCh37	9	139818376	139818376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	14	1021	2	ENST00000247668.2:c.1211G>A	p.Gly404Glu	p.G404E	ENST00000247668	NM_021138.3	404	gGa/gAa																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0021062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	47	857	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0021062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	35	736	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																													NEWRECORD																																		
EZH1	2145	MSKCC	GRCh37	17	40865275	40865277	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0021062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	42	862	0	ENST00000428826.2:c.1154_1156del	p.Glu385del	p.E385del	ENST00000428826		385	gAAGga/gga																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	50	693	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
RYBP	23429	MSKCC	GRCh37	3	72427783	72427783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	24	285	0	ENST00000477973.2:c.705G>A	p.Arg236Gln	p.R236Q	ENST00000477973	NM_012234.5	236	cGg/cAg																																													NEWRECORD																																		
NCOA3	8202	MSKCC	GRCh37	20	46279873	46279873	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	54	861	1	ENST00000371998.3:c.3799C>T	p.Gln1267Ter	p.Q1267*	ENST00000371998		1267	Cag/Tag																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56184140	56184140	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	136	672	0	ENST00000399503.3:c.4345T>A	p.Trp1449Arg	p.W1449R	ENST00000399503	NM_005921.1	1449	Tgg/Agg																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95566250	95566250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780488568		P-0021022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	95	554	0	ENST00000343455.3:c.4073G>A	p.Arg1358His	p.R1358H	ENST00000343455	NM_177438.2	1358	cGc/cAc																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1220370	1220370	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0021022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	212	733	1	ENST00000326873.7:c.465-2A>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																														NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0021022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	260	733	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108106434	108106434	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0021022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	78	289	0	ENST00000278616.4:c.369T>G	p.Tyr123Ter	p.Y123*	ENST00000278616	NM_000051.3	123	taT/taG																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32913987	32913987	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs138489917		P-0021022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	49	543	0	ENST00000380152.3:c.5495C>G	p.Ser1832Cys	p.S1832C	ENST00000380152		1832	tCt/tGt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7573992	7573992	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	281	817	0	ENST00000269305.4:c.1035del	p.Asn345LysfsTer25	p.N345Kfs*25	ENST00000269305	NM_001126112.2	345	aaT/aa																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47058724	47058727	+	frameshift_variant	Frame_Shift_Del	DEL	ATTC	ATTC	-			P-0021022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	95	572	0	ENST00000409792.3:c.7551_7554del	p.Met2517IlefsTer4	p.M2517Ifs*4	ENST00000409792	NM_014159.6	2517	atGAAT/at																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2963978	2963978	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	327	753	0	ENST00000396946.4:c.1829C>A	p.Ser610Tyr	p.S610Y	ENST00000396946	NM_032415.4	610	tCc/tAc																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47041002	47041002	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	234	775	0	ENST00000329236.7:c.1298C>G	p.Ser433Ter	p.S433*	ENST00000329236	NM_001204466.1	433	tCa/tGa																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142275290	142275293	+	protein_altering_variant	In_Frame_Del	DEL	ACAA	ACAA	T			P-0021022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	168	649	0	ENST00000350721.4:c.2010_2013delinsA	p.Ser670_Cys671delinsArg	p.S670_C671delinsR	ENST00000350721	NM_001184.3	670	agTTGT/agA																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0021023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	452	914	4	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30691802	30691802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	182	807	0	ENST00000359013.4:c.379C>T	p.His127Tyr	p.H127Y	ENST00000359013	NM_001024847.2	127	Cat/Tat																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	79	769	1	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67457327	67457327	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	42	717	0	ENST00000327367.4:c.301C>G	p.His101Asp	p.H101D	ENST00000327367	NM_005902.3	101	Cac/Gac																																													NEWRECORD																																		
MALT1	10892	MSKCC	GRCh37	18	56409172	56409172	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	19	500	0	ENST00000348428.3:c.1679T>C	p.Leu560Pro	p.L560P	ENST00000348428	NM_006785.3	560	cTt/cCt																																													NEWRECORD																																		
INPP4A	3631	MSKCC	GRCh37	2	99172103	99172103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	46	596	1	ENST00000074304.5:c.1669G>A	p.Glu557Lys	p.E557K	ENST00000074304	NM_001134224.1	557	Gag/Aag																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56180558	56180564	+	frameshift_variant	Frame_Shift_Del	DEL	GAATGAT	GAATGAT	-			P-0021150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	23	425	0	ENST00000399503.3:c.3889_3895del	p.Met1297AlafsTer3	p.M1297Afs*3	ENST00000399503	NM_005921.1	1296	aGAATGATg/ag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	279	1047	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0021073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	263	534	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0021073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	155	713	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																													NEWRECORD																																		
H3F3B	3021	MSKCC	GRCh37	17	73775128	73775128	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	201	766	1	ENST00000254810.4:c.128G>A	p.Arg43Lys	p.R43K	ENST00000254810	NM_005324.3	43	aGg/aAg																																													NEWRECORD																																		
TAP2	6891	MSKCC	GRCh37	6	32797817	32797817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	236	869	0	ENST00000374899.4:c.1685del	p.Asn562ThrfsTer15	p.N562Tfs*15	ENST00000374899	NM_018833.2	562	aAc/ac																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	110	434	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0021069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	85	658	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39933400	39933400	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	53	558	0	ENST00000378444.4:c.1199del	p.Gly400AlafsTer42	p.G400Afs*42	ENST00000378444	NM_001123385.1	400	gGc/gc																																													NEWRECORD																																		
NUP93	9688	MSKCC	GRCh37	16	56857716	56857716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	42	585	0	ENST00000308159.5:c.752G>A	p.Arg251His	p.R251H	ENST00000308159	NM_014669.4	251	cGc/cAc																																													NEWRECORD																																		
PMS1	5378	MSKCC	GRCh37	2	190719463	190719463	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	22	331	0	ENST00000441310.2:c.1465A>T	p.Asn489Tyr	p.N489Y	ENST00000441310	NM_000534.4	489	Aac/Tac																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41419977	41419977	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	60	532	0	ENST00000373198.4:c.344C>A	p.Ser115Tyr	p.S115Y	ENST00000373198	NM_133170.3	115	tCc/tAc																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47164883	47164883	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	28	316	0	ENST00000409792.3:c.1243A>G	p.Thr415Ala	p.T415A	ENST00000409792	NM_014159.6	415	Act/Gct																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971153	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	61	524	0	ENST00000304494.5:c.205del	p.Glu69SerfsTer77	p.E69Sfs*77	ENST00000304494	NM_000077.4	69	Gag/ag																																													NEWRECORD																																		
GATA1	2623	MSKCC	GRCh37	X	48652222	48652222	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	72	594	0	ENST00000376670.3:c.893G>T	p.Arg298Leu	p.R298L	ENST00000376670	NM_002049.3	298	cGg/cTg																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70357421	70357421	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	72	769	0	ENST00000374080.3:c.5762T>A	p.Met1921Lys	p.M1921K	ENST00000374080		1921	aTg/aAg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	238	811	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0021153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	313	848	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0021153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	167	579	2	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0021153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	182	337	0	ENST00000257430.4:c.4128T>G	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taG																																													NEWRECORD																																		
RRAGC	64121	MSKCC	GRCh37	1	39321401	39321401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	193	678	2	ENST00000373001.3:c.620G>A	p.Gly207Glu	p.G207E	ENST00000373001	NM_022157.3	207	gGg/gAg																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142185227	142185227	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	208	772	0	ENST00000350721.4:c.6836A>C	p.Asn2279Thr	p.N2279T	ENST00000350721	NM_001184.3	2279	aAc/aCc																																													NEWRECORD																																		
WHSC1	7468	MSKCC	GRCh37	4	1980613	1980613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	184	585	0	ENST00000382891.5:c.4075C>T	p.Arg1359Trp	p.R1359W	ENST00000382891	NM_133335.3	1359	Cgg/Tgg																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66356358	66356358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	164	636	0	ENST00000273854.3:c.1139C>T	p.Pro380Leu	p.P380L	ENST00000273854	NM_004439.5	380	cCt/cTt																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67575562	67575562	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0021153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	133	362	0	ENST00000274335.5:c.634+1G>A		p.X212_splice	ENST00000274335		212																																														NEWRECORD																																		
FGFR1	2260	MSKCC	GRCh37	8	38273515	38273515	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	42	952	1	ENST00000425967.3:c.1820G>T	p.Arg607Leu	p.R607L	ENST00000425967	NM_001174067.1	607	cGg/cTg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	304	1335	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																													NEWRECORD																																		
NKX2-1	7080	MSKCC	GRCh37	14	36987052	36987052	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	260	1032	0	ENST00000354822.5:c.637C>T	p.Gln213Ter	p.Q213*	ENST00000354822	NM_001079668.2	213	Cag/Tag																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72828563	72828563	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	158	1192	0	ENST00000268489.5:c.8018A>C	p.His2673Pro	p.H2673P	ENST00000268489	NM_006885.3	2673	cAc/cCc																																													NEWRECORD																																		
SUZ12	23512	MSKCC	GRCh37	17	30325684	30325684	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	35	473	1	ENST00000322652.5:c.1882G>T	p.Ala628Ser	p.A628S	ENST00000322652	NM_015355.2	628	Gct/Tct																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59761401	59761401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	43	868	0	ENST00000259008.2:c.3006G>T	p.Trp1002Cys	p.W1002C	ENST00000259008	NM_032043.2	1002	tgG/tgT																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15285089	15285089	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	164	1163	7	ENST00000263388.2:c.4526C>A	p.Ala1509Asp	p.A1509D	ENST00000263388	NM_000435.2	1509	gCc/gAc																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41100981	41100981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	125	1031	0	ENST00000373198.4:c.1375C>G	p.Arg459Gly	p.R459G	ENST00000373198	NM_133170.3	459	Cgg/Ggg																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	93967181	93967181	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	23	1018	1	ENST00000369303.4:c.2171G>A	p.Arg724Lys	p.R724K	ENST00000369303	NM_004440.3	724	aGg/aAg																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44969328	44969328	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	16	319	2	ENST00000377967.4:c.4010A>T	p.Glu1337Val	p.E1337V	ENST00000377967	NM_021140.2	1337	gAg/gTg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0021094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	31	586	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1221320	1221320	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	91	631	0	ENST00000326873.7:c.843delG	p.Leu282SerfsTer5	p.L282Sfs*5	ENST00000326873	NM_000455.4	281	ccG/cc																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67457608	67457608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	84	638	0	ENST00000327367.4:c.418G>A	p.Val140Met	p.V140M	ENST00000327367	NM_005902.3	140	Gtg/Atg																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10602334	10602334	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1170	116	707	0	ENST00000171111.5:c.1244G>T	p.Arg415Leu	p.R415L	ENST00000171111	NM_203500.1	415	cGc/cTc																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11105635	11105636	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0021094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	69	688	1	ENST00000344626.4:c.1554_1555del	p.Asn519ArgfsTer14	p.N519Rfs*14	ENST00000344626	NM_003072.3	517	aaAGag/aaag																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123181312	123181312	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	19	324	0	ENST00000218089.9:c.776G>T	p.Arg259Leu	p.R259L	ENST00000218089	NM_001042749.1	259	cGa/cTa																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49936345	49936345	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	77	583	0	ENST00000296474.3:c.1503T>A	p.Asp501Glu	p.D501E	ENST00000296474	NM_002447.2	501	gaT/gaA																																													NEWRECORD																																		
PIK3CD	5293	MSKCC	GRCh37	1	9787030	9787030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	137	855	1	ENST00000377346.4:c.3061G>A	p.Glu1021Lys	p.E1021K	ENST00000377346	NM_005026.3	1021	Gaa/Aaa																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16261434	16261434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	133	904	0	ENST00000375759.3:c.8699C>T	p.Ser2900Leu	p.S2900L	ENST00000375759	NM_015001.2	2900	tCg/tTg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27089669	27089669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	94	883	4	ENST00000324856.7:c.2625G>A	p.Met875Ile	p.M875I	ENST00000324856	NM_006015.4	875	atG/atA																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27100172	27100172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	82	668	2	ENST00000324856.7:c.3968G>A	p.Arg1323His	p.R1323H	ENST00000324856	NM_006015.4	1323	cGc/cAc																																													NEWRECORD																																		
CSF3R	1441	MSKCC	GRCh37	1	36932400	36932400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	142	1128	0	ENST00000361632.4:c.2069C>T	p.Thr690Met	p.T690M	ENST00000361632		690	aCg/aTg																																													NEWRECORD																																		
MPL	4352	MSKCC	GRCh37	1	43812205	43812205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	138	994	2	ENST00000372470.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000372470	NM_005373.2	357	cGa/cAa																																													NEWRECORD																																		
MPL	4352	MSKCC	GRCh37	1	43812214	43812214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	135	979	0	ENST00000372470.3:c.1079G>A	p.Ser360Asn	p.S360N	ENST00000372470	NM_005373.2	360	aGc/aAc																																													NEWRECORD																																		
NEGR1	257194	MSKCC	GRCh37	1	72163819	72163819	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	44	562	0	ENST00000357731.5:c.539A>G	p.Lys180Arg	p.K180R	ENST00000357731	NM_173808.2	180	aAa/aGa																																													NEWRECORD																																		
FUBP1	8880	MSKCC	GRCh37	1	78428511	78428511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	102	935	0	ENST00000370768.2:c.1288C>T	p.Arg430Cys	p.R430C	ENST00000370768	NM_003902.3	430	Cgt/Tgt																																													NEWRECORD																																		
CSDE1	7812	MSKCC	GRCh37	1	115276472	115276472	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	75	762	2	ENST00000438362.2:c.856G>T	p.Glu286Ter	p.E286*	ENST00000438362	NM_001242891.1	286	Gaa/Taa																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162745593	162745593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	106	814	0	ENST00000367921.3:c.2008G>A	p.Glu670Lys	p.E670K	ENST00000367921	NM_006182.2	670	Gag/Aag																																													NEWRECORD																																		
IL10	3586	MSKCC	GRCh37	1	206943236	206943236	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	78	561	2	ENST00000423557.1:c.382C>T	p.Arg128Ter	p.R128*	ENST00000423557	NM_000572.2	128	Cga/Tga																																													NEWRECORD																																		
HIST3H3	8290	MSKCC	GRCh37	1	228613019	228613019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	77	423	0	ENST00000366696.1:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000366696	NM_003493.2	3	cGa/cAa																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115778	8115778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	113	903	3	ENST00000346208.3:c.1124G>A	p.Cys375Tyr	p.C375Y	ENST00000346208		375	tGc/tAc																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63829469	63829469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	49	586	4	ENST00000279873.7:c.1112G>A	p.Arg371His	p.R371H	ENST00000279873	NM_032199.2	371	cGc/cAc																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63829541	63829541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	60	570	1	ENST00000279873.7:c.1184G>A	p.Arg395His	p.R395H	ENST00000279873	NM_032199.2	395	cGc/cAc																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63845613	63845613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	47	394	0	ENST00000279873.7:c.1352G>A	p.Ser451Asn	p.S451N	ENST00000279873	NM_032199.2	451	aGc/aAc																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63850777	63850777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	74	640	0	ENST00000279873.7:c.1555G>A	p.Glu519Lys	p.E519K	ENST00000279873	NM_032199.2	519	Gaa/Aaa																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63852134	63852134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	98	790	0	ENST00000279873.7:c.2912C>T	p.Ser971Leu	p.S971L	ENST00000279873	NM_032199.2	971	tCg/tTg																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70405917	70405917	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	79	891	0	ENST00000373644.4:c.3431A>C	p.Asn1144Thr	p.N1144T	ENST00000373644	NM_030625.2	1144	aAc/aCc																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89711931	89711931	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	28	795	0	ENST00000371953.3:c.549G>T	p.Lys183Asn	p.K183N	ENST00000371953	NM_000314.4	183	aaG/aaT																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	90	799	1	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																													NEWRECORD																																		
INPPL1	3636	MSKCC	GRCh37	11	71944012	71944012	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	150	1017	0	ENST00000298229.2:c.1945C>T	p.Arg649Ter	p.R649*	ENST00000298229	NM_001567.3	649	Cga/Tga																																													NEWRECORD																																		
PAK1	5058	MSKCC	GRCh37	11	77048440	77048440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	141	916	1	ENST00000356341.3:c.1145C>T	p.Ser382Leu	p.S382L	ENST00000356341	NM_002576.4	382	tCg/tTg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	68	850	1	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108205756	108205756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	78	609	0	ENST00000278616.4:c.8071C>T	p.Arg2691Cys	p.R2691C	ENST00000278616	NM_000051.3	2691	Cgc/Tgc																																													NEWRECORD																																		
CBL	867	MSKCC	GRCh37	11	119168162	119168162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	89	853	0	ENST00000264033.4:c.2222C>T	p.Ala741Val	p.A741V	ENST00000264033	NM_005188.3	741	gCg/gTg																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18699323	18699323	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199904184		P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	77	658	0	ENST00000266497.5:c.3424C>T	p.Arg1142Cys	p.R1142C	ENST00000266497		1142	Cgt/Tgt																																													NEWRECORD																																		
RECQL	5965	MSKCC	GRCh37	12	21636471	21636471	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	103	872	0	ENST00000421138.2:c.539A>C	p.Lys180Thr	p.K180T	ENST00000421138		180	aAa/aCa																																													NEWRECORD																																		
H3F3C	440093	MSKCC	GRCh37	12	31944961	31944961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	113	783	0	ENST00000340398.3:c.140C>T	p.Ala47Val	p.A47V	ENST00000340398	NM_001013699.2	47	gCg/gTg																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46245076	46245076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	98	800	0	ENST00000334344.6:c.3170C>T	p.Ser1057Leu	p.S1057L	ENST00000334344	NM_152641.2	1057	tCg/tTg																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49425893	49425893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	145	991	2	ENST00000301067.7:c.12595G>A	p.Ala4199Thr	p.A4199T	ENST00000301067	NM_003482.3	4199	Gca/Aca																																													NEWRECORD																																		
IGF1	3479	MSKCC	GRCh37	12	102869501	102869501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	111	690	3	ENST00000307046.8:c.140C>T	p.Thr47Met	p.T47M	ENST00000307046	NM_001111285.1	47	aCg/aTg																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115120969	115120969	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	81	754	0	ENST00000257566.3:c.37A>C	p.Thr13Pro	p.T13P	ENST00000257566	NM_016569.3	13	Aca/Cca																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519945		P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	104	738	1	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28908194	28908194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	109	1005	2	ENST00000282397.4:c.2561C>T	p.Thr854Met	p.T854M	ENST00000282397	NM_002019.4	854	aCg/aTg																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	29008329	29008329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	60	518	0	ENST00000282397.4:c.542G>A	p.Gly181Glu	p.G181E	ENST00000282397	NM_002019.4	181	gGa/gAa																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32913279	32913279	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	54	861	0	ENST00000380152.3:c.4787A>C	p.Asn1596Thr	p.N1596T	ENST00000380152		1596	aAt/aCt																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73346368	73346368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	57	807	0	ENST00000377767.4:c.1432G>A	p.Val478Ile	p.V478I	ENST00000377767	NM_014953.3	478	Gta/Ata																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103519117	103519117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	95	821	0	ENST00000355739.4:c.2455C>T	p.Arg819Trp	p.R819W	ENST00000355739	NM_000123.3	819	Cgg/Tgg																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110434426	110434426	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	136	1035	1	ENST00000375856.3:c.3975C>A	p.Phe1325Leu	p.F1325L	ENST00000375856	NM_003749.2	1325	ttC/ttA																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110435634	110435634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	97	519	1	ENST00000375856.3:c.2767G>A	p.Asp923Asn	p.D923N	ENST00000375856	NM_003749.2	923	Gac/Aac																																													NEWRECORD																																		
NKX2-1	7080	MSKCC	GRCh37	14	36987192	36987192	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	120	1034	0	ENST00000354822.5:c.497A>G	p.Asn166Ser	p.N166S	ENST00000354822	NM_001079668.2	166	aAc/aGc																																													NEWRECORD																																		
RAD51	5888	MSKCC	GRCh37	15	40993358	40993358	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	78	593	1	ENST00000267868.3:c.184A>C	p.Asn62His	p.N62H	ENST00000267868	NM_002875.4	62	Aat/Cat																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42003246	42003246	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	103	993	0	ENST00000219905.7:c.2783A>C	p.Lys928Thr	p.K928T	ENST00000219905	NM_001164273.1	928	aAa/aCa																																													NEWRECORD																																		
TP53BP1	7158	MSKCC	GRCh37	15	43707977	43707977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	164	1056	1	ENST00000382044.4:c.4904G>A	p.Arg1635His	p.R1635H	ENST00000382044	NM_001141980.1	1635	cGc/cAc																																													NEWRECORD																																		
TP53BP1	7158	MSKCC	GRCh37	15	43714237	43714237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	165	1210	0	ENST00000382044.4:c.3916G>A	p.Asp1306Asn	p.D1306N	ENST00000382044	NM_001141980.1	1306	Gat/Aat																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007643	45007643	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	52	519	1	ENST00000558401.1:c.90C>A	p.Tyr30Ter	p.Y30*	ENST00000558401	NM_004048.2	30	taC/taA																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007672	45007672	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	78	587	0	ENST00000558401.1:c.119C>A	p.Ser40Ter	p.S40*	ENST00000558401	NM_004048.2	40	tCa/tAa																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007867	45007867	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	85	630	0	ENST00000558401.1:c.314T>C	p.Val105Ala	p.V105A	ENST00000558401	NM_004048.2	105	gTg/gCg																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67457303	67457303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	133	924	5	ENST00000327367.4:c.277C>T	p.Arg93Ter	p.R93*	ENST00000327367	NM_005902.3	93	Cga/Tga																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67473635	67473635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	142	937	1	ENST00000327367.4:c.715G>A	p.Glu239Lys	p.E239K	ENST00000327367	NM_005902.3	239	Gag/Aag																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88726711	88726711	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	80	742	1	ENST00000360948.2:c.333G>T	p.Lys111Asn	p.K111N	ENST00000360948	NM_001012338.2	111	aaG/aaT																																													NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91293070	91293070	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	42	648	2	ENST00000355112.3:c.572G>T	p.Arg191Ile	p.R191I	ENST00000355112	NM_000057.2	191	aGa/aTa																																													NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91326066	91326066	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	64	680	0	ENST00000355112.3:c.2570T>G	p.Phe857Cys	p.F857C	ENST00000355112	NM_000057.2	857	tTt/tGt																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99250839	99250839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	107	690	1	ENST00000268035.6:c.143G>A	p.Arg48His	p.R48H	ENST00000268035	NM_000875.3	48	cGc/cAc																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99465573	99465573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	45	852	3	ENST00000268035.6:c.2398C>T	p.Arg800Cys	p.R800C	ENST00000268035	NM_000875.3	800	Cgc/Tgc																																													NEWRECORD																																		
SLX4	84464	MSKCC	GRCh37	16	3639366	3639366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	155	1041	0	ENST00000294008.3:c.4273G>A	p.Asp1425Asn	p.D1425N	ENST00000294008	NM_032444.2	1425	Gac/Aac																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3778168	3778168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	150	1082	1	ENST00000262367.5:c.6880C>T	p.Arg2294Trp	p.R2294W	ENST00000262367	NM_004380.2	2294	Cgg/Tgg																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9857197	9857197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	109	705	1	ENST00000330684.3:c.4204C>T	p.Arg1402Trp	p.R1402W	ENST00000330684	NM_001134407.1	1402	Cgg/Tgg																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72845934	72845934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	75	632	3	ENST00000268489.5:c.3533C>T	p.Ser1178Leu	p.S1178L	ENST00000268489	NM_006885.3	1178	tCg/tTg																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81888069	81888069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	69	636	0	ENST00000359376.3:c.214G>A	p.Glu72Lys	p.E72K	ENST00000359376	NM_002661.3	72	Gaa/Aaa																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29556080	29556080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	49	395	1	ENST00000358273.4:c.2447G>A	p.Arg816Gln	p.R816Q	ENST00000358273	NM_001042492.2	816	cGa/cAa																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29557865	29557865	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	29	354	0	ENST00000358273.4:c.3119A>C	p.Lys1040Thr	p.K1040T	ENST00000358273	NM_001042492.2	1040	aAg/aCg																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29579995	29579995	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	78	698	3	ENST00000358273.4:c.4150G>T	p.Glu1384Ter	p.E1384*	ENST00000358273	NM_001042492.2	1384	Gaa/Taa																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29652960	29652960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	91	735	0	ENST00000358273.4:c.4958G>A	p.Arg1653His	p.R1653H	ENST00000358273	NM_001042492.2	1653	cGc/cAc																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29654757	29654757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	77	635	0	ENST00000358273.4:c.5509G>A	p.Asp1837Asn	p.D1837N	ENST00000358273	NM_001042492.2	1837	Gac/Aac																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29654820	29654820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	70	498	1	ENST00000358273.4:c.5572G>A	p.Ala1858Thr	p.A1858T	ENST00000358273	NM_001042492.2	1858	Gca/Aca																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45372045	45372045	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	77	801	0	ENST00000262160.6:c.1124A>C	p.Lys375Thr	p.K375T	ENST00000262160	NM_005901.5	375	aAa/aCa																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	112	967	1	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45395689	45395689	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	100	759	0	ENST00000262160.6:c.445T>G	p.Cys149Gly	p.C149G	ENST00000262160	NM_005901.5	149	Tgc/Ggc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5215538	5215538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	148	1083	1	ENST00000357368.4:c.4165G>A	p.Asp1389Asn	p.D1389N	ENST00000357368	NM_002850.3	1389	Gac/Aac																																													NEWRECORD																																		
UPF1	5976	MSKCC	GRCh37	19	18968144	18968144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	154	944	2	ENST00000262803.5:c.1984G>A	p.Asp662Asn	p.D662N	ENST00000262803	NM_002911.3	662	Gac/Aac																																													NEWRECORD																																		
KMT2B	9757	MSKCC	GRCh37	19	36211219	36211219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	183	1445	1	ENST00000222270.7:c.970G>A	p.Glu324Lys	p.E324K	ENST00000222270	NM_014727.1	324	Gaa/Aaa																																													NEWRECORD																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52719065	52719065	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	76	937	0	ENST00000322088.6:c.841A>C	p.Thr281Pro	p.T281P	ENST00000322088	NM_014225.5	281	Aca/Cca																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25470926	25470926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	144	1095	0	ENST00000264709.3:c.835G>A	p.Asp279Asn	p.D279N	ENST00000264709	NM_175629.2	279	Gat/Aat																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	26068374	26068374	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	78	749	0	ENST00000435504.4:c.116A>C	p.Gln39Pro	p.Q39P	ENST00000435504		39	cAg/cCg																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29416563	29416563	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	28	784	0	ENST00000389048.3:c.4390C>T	p.Arg1464Ter	p.R1464*	ENST00000389048	NM_004304.4	1464	Cga/Tga																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29606678	29606678	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs188859061		P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	101	935	0	ENST00000389048.3:c.1202G>A	p.Arg401Gln	p.R401Q	ENST00000389048	NM_004304.4	401	cGa/cAa																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29606679	29606679	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs865931787		P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	132	948	2	ENST00000389048.3:c.1201C>T	p.Arg401Ter	p.R401*	ENST00000389048	NM_004304.4	401	Cga/Tga																																													NEWRECORD																																		
SOS1	6654	MSKCC	GRCh37	2	39222425	39222425	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	62	1056	0	ENST00000402219.2:c.3185A>C	p.Lys1062Thr	p.K1062T	ENST00000402219	NM_005633.3	1062	aAa/aCa																																													NEWRECORD																																		
SOS1	6654	MSKCC	GRCh37	2	39281837	39281837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	78	863	1	ENST00000402219.2:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000402219	NM_005633.3	213	cGa/cAa																																													NEWRECORD																																		
EPCAM	4072	MSKCC	GRCh37	2	47606099	47606099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	61	640	0	ENST00000263735.4:c.563A>G	p.Asn188Ser	p.N188S	ENST00000263735	NM_002354.2	188	aAt/aGt																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47635578	47635578	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	119	842	0	ENST00000233146.2:c.250A>G	p.Asn84Asp	p.N84D	ENST00000233146	NM_000251.2	84	Aat/Gat																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47641426	47641426	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	90	747	0	ENST00000233146.2:c.811T>C	p.Ser271Pro	p.S271P	ENST00000233146	NM_000251.2	271	Tct/Cct																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47703539	47703539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1203462814		P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	107	955	0	ENST00000233146.2:c.2039G>A	p.Arg680Gln	p.R680Q	ENST00000233146	NM_000251.2	680	cGa/cAa																																													NEWRECORD																																		
INPP4A	3631	MSKCC	GRCh37	2	99193587	99193587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	90	728	2	ENST00000074304.5:c.2782G>A	p.Ala928Thr	p.A928T	ENST00000074304	NM_001134224.1	928	Gcc/Acc																																													NEWRECORD																																		
ERCC3	2071	MSKCC	GRCh37	2	128050307	128050307	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	132	839	0	ENST00000285398.2:c.350A>C	p.Lys117Thr	p.K117T	ENST00000285398	NM_000122.1	117	aAa/aCa																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198267680	198267680	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	89	649	0	ENST00000335508.6:c.1799T>C	p.Leu600Ser	p.L600S	ENST00000335508	NM_012433.2	600	tTg/tCg																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202131412	202131412	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1339962485		P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	90	749	2	ENST00000358485.4:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000358485	NM_001080125.1	127	cGa/cAa																																													NEWRECORD																																		
CTLA4	1493	MSKCC	GRCh37	2	204737492	204737492	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	82	679	0	ENST00000302823.3:c.629A>C	p.Glu210Ala	p.E210A	ENST00000302823	NM_005214.4	210	gAa/gCa																																													NEWRECORD																																		
IDH1	3417	MSKCC	GRCh37	2	209103819	209103819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	78	861	1	ENST00000345146.2:c.1130C>T	p.Ala377Val	p.A377V	ENST00000345146	NM_005896.2	377	gCt/gTt																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9523279	9523279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	141	946	0	ENST00000353224.5:c.1958G>A	p.Arg653Gln	p.R653Q	ENST00000353224	NM_177990.2	653	cGg/cAg																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31019417	31019417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	79	790	0	ENST00000375687.4:c.914G>A	p.Ser305Asn	p.S305N	ENST00000375687	NM_015338.5	305	aGc/aAc																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31021124	31021124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	150	931	1	ENST00000375687.4:c.1123G>A	p.Val375Met	p.V375M	ENST00000375687	NM_015338.5	375	Gtg/Atg																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40713470	40713470	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1318044562		P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	42	1016	1	ENST00000373198.4:c.4045C>T	p.Arg1349Cys	p.R1349C	ENST00000373198	NM_133170.3	1349	Cgt/Tgt																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40899085	40899085	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	124	968	1	ENST00000373198.4:c.2185G>T	p.Gly729Cys	p.G729C	ENST00000373198	NM_133170.3	729	Ggc/Tgc																																													NEWRECORD																																		
NCOA3	8202	MSKCC	GRCh37	20	46265268	46265268	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	71	539	0	ENST00000371998.3:c.2138T>C	p.Ile713Thr	p.I713T	ENST00000371998		713	aTa/aCa																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57485442	57485442	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	55	626	0	ENST00000371085.3:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000371085	NM_000516.4	342	Cga/Tga																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36171640	36171640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	115	641	0	ENST00000300305.3:c.925G>A	p.Gly309Ser	p.G309S	ENST00000300305		309	Ggc/Agc																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41565543	41565543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	30	814	1	ENST00000263253.7:c.4209C>A	p.Phe1403Leu	p.F1403L	ENST00000263253	NM_001429.3	1403	ttC/ttA																																													NEWRECORD																																		
RAF1	5894	MSKCC	GRCh37	3	12650277	12650277	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	118	904	0	ENST00000251849.4:c.569T>C	p.Ile190Thr	p.I190T	ENST00000251849	NM_002880.3	190	aTc/aCc																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47098930	47098930	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	168	1068	2	ENST00000409792.3:c.6344A>G	p.Lys2115Arg	p.K2115R	ENST00000409792	NM_014159.6	2115	aAa/aGa																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49927394	49927394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	57	1031	1	ENST00000296474.3:c.3910C>T	p.Arg1304Trp	p.R1304W	ENST00000296474	NM_002447.2	1304	Cgg/Tgg																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52584478	52584478	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142726131		P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	111	822	4	ENST00000394830.3:c.4535C>T	p.Ala1512Val	p.A1512V	ENST00000394830	NM_018313.4	1512	gCg/gTg																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52637717	52637717	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	93	792	2	ENST00000394830.3:c.2599G>T	p.Glu867Ter	p.E867*	ENST00000394830	NM_018313.4	867	Gaa/Taa																																													NEWRECORD																																		
MITF	4286	MSKCC	GRCh37	3	69990402	69990402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	46	559	0	ENST00000352241.4:c.682G>A	p.Asp228Asn	p.D228N	ENST00000352241	NM_198159.2	228	Gat/Aat																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71008534	71008534	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	63	477	0	ENST00000318789.4:c.1898T>C	p.Val633Ala	p.V633A	ENST00000318789	NM_032682.5	633	gTa/gCa																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71026984	71026984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	97	670	0	ENST00000318789.4:c.1343C>T	p.Ser448Leu	p.S448L	ENST00000318789	NM_032682.5	448	tCg/tTg																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89480466	89480466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	67	527	0	ENST00000336596.2:c.2303C>T	p.Ser768Leu	p.S768L	ENST00000336596	NM_005233.5	768	tCg/tTg																																													NEWRECORD																																		
GATA2	2624	MSKCC	GRCh37	3	128204593	128204593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	136	1031	0	ENST00000341105.2:c.848G>A	p.Arg283His	p.R283H	ENST00000341105	NM_032638.4	283	cGc/cAc																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134670615	134670615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	127	1047	2	ENST00000398015.3:c.526G>A	p.Ala176Thr	p.A176T	ENST00000398015	NM_004441.4	176	Gct/Act																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138374251	138374251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	85	854	0	ENST00000289153.2:c.3193C>T	p.Arg1065Trp	p.R1065W	ENST00000289153	NM_006219.2	1065	Cgg/Tgg																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138453486	138453486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	53	616	1	ENST00000289153.2:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000289153	NM_006219.2	321	cGa/cAa																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142274748	142274749	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	60	627	0	ENST00000350721.4:c.2311_2312insC	p.Lys771ThrfsTer6	p.K771Tfs*6	ENST00000350721	NM_001184.3	771	aaa/aCaa																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142274778	142274778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	69	776	0	ENST00000350721.4:c.2282C>T	p.Ser761Phe	p.S761F	ENST00000350721	NM_001184.3	761	tCt/tTt																																													NEWRECORD																																		
PRKCI	5584	MSKCC	GRCh37	3	169999726	169999726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	82	706	1	ENST00000295797.4:c.1037G>A	p.Arg346Gln	p.R346Q	ENST00000295797	NM_002740.5	346	cGa/cAa																																													NEWRECORD																																		
EIF4A2	1974	MSKCC	GRCh37	3	186504023	186504023	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	29	514	1	ENST00000323963.5:c.588A>C	p.Gln196His	p.Q196H	ENST00000323963		196	caA/caC																																													NEWRECORD																																		
EIF4A2	1974	MSKCC	GRCh37	3	186506913	186506913	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	38	361	0	ENST00000323963.5:c.1080-1G>T		p.X360_splice	ENST00000323963		360																																														NEWRECORD																																		
BCL6	604	MSKCC	GRCh37	3	187447384	187447384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780987785		P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	119	937	1	ENST00000232014.4:c.809G>A	p.Arg270Gln	p.R270Q	ENST00000232014	NM_001130845.1	270	cGa/cAa																																													NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189587160	189587160	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	82	801	0	ENST00000264731.3:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000264731	NM_003722.4	393	Cga/Tga																																													NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189612028	189612028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	115	738	0	ENST00000264731.3:c.1780C>T	p.Arg594Ter	p.R594*	ENST00000264731	NM_003722.4	594	Cga/Tga																																													NEWRECORD																																		
WHSC1	7468	MSKCC	GRCh37	4	1952853	1952853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	134	913	0	ENST00000382891.5:c.1936G>A	p.Glu646Lys	p.E646K	ENST00000382891	NM_133335.3	646	Gaa/Aaa																																													NEWRECORD																																		
KIT	3815	MSKCC	GRCh37	4	55564503	55564503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	103	688	0	ENST00000288135.5:c.391G>A	p.Asp131Asn	p.D131N	ENST00000288135	NM_000222.2	131	Gac/Aac																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66467751	66467751	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	45	559	1	ENST00000273854.3:c.518A>G	p.Lys173Arg	p.K173R	ENST00000273854	NM_004439.5	173	aAa/aGa																																													NEWRECORD																																		
FAM175A	84142	MSKCC	GRCh37	4	84383654	84383654	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	91	1015	0	ENST00000321945.7:c.1198T>G	p.Phe400Val	p.F400V	ENST00000321945	NM_139076.2	400	Ttt/Gtt																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106156315	106156315	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	71	485	0	ENST00000380013.4:c.1216C>A	p.Leu406Ile	p.L406I	ENST00000380013	NM_001127208.2	406	Ctt/Att																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106156370	106156370	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	42	504	0	ENST00000380013.4:c.1271G>T	p.Ser424Ile	p.S424I	ENST00000380013	NM_001127208.2	424	aGc/aTc																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	93	849	4	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187539885	187539885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	89	688	1	ENST00000441802.2:c.7855C>A	p.Leu2619Ile	p.L2619I	ENST00000441802	NM_005245.3	2619	Ctt/Att																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187630501	187630501	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	162	952	0	ENST00000441802.2:c.481A>C	p.Asn161His	p.N161H	ENST00000441802	NM_005245.3	161	Aac/Cac																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187630587	187630587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	109	1064	0	ENST00000441802.2:c.395G>A	p.Arg132Gln	p.R132Q	ENST00000441802	NM_005245.3	132	cGa/cAa																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1258719	1258719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	165	1015	1	ENST00000310581.5:c.3026C>T	p.Ala1009Val	p.A1009V	ENST00000310581	NM_198253.2	1009	gCg/gTg																																													NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35874590	35874591	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	109	863	0	ENST00000303115.3:c.752dupT	p.Ser252LeufsTer18	p.S252Lfs*18	ENST00000303115	NM_002185.3	249	agt/agTt																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38982057	38982057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	76	893	3	ENST00000357387.3:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000357387	NM_152756.3	222	cGa/cAa																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56152566	56152566	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	53	392	1	ENST00000399503.3:c.622C>T	p.Arg208Ter	p.R208*	ENST00000399503	NM_005921.1	208	Cga/Tga																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	58	513	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589618	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519838		P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	55	516	0	ENST00000274335.5:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000274335		461	Cga/Tga																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67591270	67591270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	79	623	0	ENST00000274335.5:c.1768C>T	p.Arg590Trp	p.R590W	ENST00000274335		590	Cgg/Tgg																																													NEWRECORD																																		
MSH3	4437	MSKCC	GRCh37	5	80168958	80168958	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	85	989	0	ENST00000265081.6:c.3154T>G	p.Phe1052Val	p.F1052V	ENST00000265081	NM_002439.4	1052	Ttt/Gtt																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86670706	86670706	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	17	417	0	ENST00000274376.6:c.1984A>C	p.Thr662Pro	p.T662P	ENST00000274376	NM_002890.2	662	Aca/Cca																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	55	606	1	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	62	454	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131940522	131940522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	62	591	0	ENST00000265335.6:c.2549G>A	p.Arg850His	p.R850H	ENST00000265335		850	cGt/cAt																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176562484	176562484	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	102	985	0	ENST00000439151.2:c.380A>C	p.Lys127Thr	p.K127T	ENST00000439151	NM_022455.4	127	aAa/aCa																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176721771	176721771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	80	712	4	ENST00000439151.2:c.7402C>T	p.Arg2468Trp	p.R2468W	ENST00000439151	NM_022455.4	2468	Cgg/Tgg																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180057039	180057039	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	134	1092	0	ENST00000261937.6:c.580T>C	p.Ser194Pro	p.S194P	ENST00000261937	NM_182925.4	194	Tcc/Ccc																																													NEWRECORD																																		
HIST1H1C	3006	MSKCC	GRCh37	6	26056291	26056292	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	114	748	0	ENST00000343677.2:c.365dup	p.Ala123GlyfsTer7	p.A123Gfs*7	ENST00000343677	NM_005319.3	122	aag/aaAg																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117662700	117662700	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	56	757	1	ENST00000368508.3:c.4765G>T	p.Glu1589Ter	p.E1589*	ENST00000368508	NM_002944.2	1589	Gaa/Taa																																													NEWRECORD																																		
PMS2	5395	MSKCC	GRCh37	7	6026666	6026666	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	186	1463	0	ENST00000265849.7:c.1730A>C	p.Lys577Thr	p.K577T	ENST00000265849	NM_000535.5	577	aAg/aCg																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55224321	55224321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	89	698	0	ENST00000275493.2:c.1102G>A	p.Asp368Asn	p.D368N	ENST00000275493	NM_005228.3	368	Gat/Aat																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55273205	55273205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	126	873	1	ENST00000275493.2:c.3528C>A	p.Phe1176Leu	p.F1176L	ENST00000275493	NM_005228.3	1176	ttC/ttA																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106509432	106509432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	106	911	0	ENST00000359195.3:c.1426C>T	p.Arg476Cys	p.R476C	ENST00000359195	NM_002649.2	476	Cgc/Tgc																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106545636	106545636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	64	874	0	ENST00000359195.3:c.3113G>A	p.Gly1038Glu	p.G1038E	ENST00000359195	NM_002649.2	1038	gGa/gAa																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116418997	116418997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	53	432	0	ENST00000397752.3:c.3508C>T	p.Arg1170Ter	p.R1170*	ENST00000397752	NM_000245.2	1170	Cga/Tga																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128845086	128845086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	188	1098	2	ENST00000249373.3:c.580G>A	p.Glu194Lys	p.E194K	ENST00000249373	NM_005631.4	194	Gaa/Aaa																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140487360	140487360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507472		P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	103	916	2	ENST00000288602.6:c.1165C>T	p.Arg389Cys	p.R389C	ENST00000288602	NM_004333.4	389	Cgt/Tgt																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151860317	151860317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	85	683	0	ENST00000262189.6:c.10345T>C	p.Ser3449Pro	p.S3449P	ENST00000262189	NM_170606.2	3449	Tcc/Ccc																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151871325	151871325	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	61	583	0	ENST00000262189.6:c.9265T>G	p.Phe3089Val	p.F3089V	ENST00000262189	NM_170606.2	3089	Ttt/Gtt																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151878863	151878863	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	118	841	2	ENST00000262189.6:c.6082C>T	p.Arg2028Ter	p.R2028*	ENST00000262189	NM_170606.2	2028	Cga/Tga																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151945021	151945021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	10	217	0	ENST00000262189.6:c.2498G>T	p.Arg833Ile	p.R833I	ENST00000262189	NM_170606.2	833	aGa/aTa																																													NEWRECORD																																		
FGFR1	2260	MSKCC	GRCh37	8	38287216	38287216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	176	1155	0	ENST00000425967.3:c.441C>A	p.Phe147Leu	p.F147L	ENST00000425967	NM_001174067.1	147	ttC/ttA																																													NEWRECORD																																		
PREX2	80243	MSKCC	GRCh37	8	68995539	68995539	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	83	1018	0	ENST00000288368.4:c.1943C>A	p.Pro648His	p.P648H	ENST00000288368	NM_024870.2	648	cCt/cAt																																													NEWRECORD																																		
PREX2	80243	MSKCC	GRCh37	8	69136820	69136820	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	84	753	0	ENST00000288368.4:c.4734G>T	p.Lys1578Asn	p.K1578N	ENST00000288368	NM_024870.2	1578	aaG/aaT																																													NEWRECORD																																		
AGO2	27161	MSKCC	GRCh37	8	141582961	141582961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	171	1167	2	ENST00000220592.5:c.286G>A	p.Gly96Ser	p.G96S	ENST00000220592	NM_012154.3	96	Ggc/Agc																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8340357	8340357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	99	775	0	ENST00000356435.5:c.5239C>T	p.Arg1747Cys	p.R1747C	ENST00000356435		1747	Cgt/Tgt																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971026	21971026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	88	445	1	ENST00000304494.5:c.332G>A	p.Gly111Asp	p.G111D	ENST00000304494	NM_000077.4	111	gGc/gAc																																													NEWRECORD																																		
TEK	7010	MSKCC	GRCh37	9	27229184	27229184	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	111	826	0	ENST00000380036.4:c.3329A>C	p.Lys1110Thr	p.K1110T	ENST00000380036	NM_000459.3	1110	aAg/aCg																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98231389	98231389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	121	873	4	ENST00000331920.6:c.1894G>A	p.Asp632Asn	p.D632N	ENST00000331920	NM_000264.3	632	Gac/Aac																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98268698	98268698	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	53	544	0	ENST00000331920.6:c.385T>C	p.Trp129Arg	p.W129R	ENST00000331920	NM_000264.3	129	Tgg/Cgg																																													NEWRECORD																																		
PPP6C	5537	MSKCC	GRCh37	9	127912079	127912079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	62	588	1	ENST00000373547.4:c.791G>A	p.Arg264His	p.R264H	ENST00000373547	NM_002721.4	264	cGt/cAt																																													NEWRECORD																																		
PPP6C	5537	MSKCC	GRCh37	9	127915943	127915943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	98	858	2	ENST00000373547.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000373547	NM_002721.4	180	Gaa/Aaa																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133760790	133760790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	129	936	0	ENST00000318560.5:c.3113C>T	p.Ala1038Val	p.A1038V	ENST00000318560	NM_005157.4	1038	gCg/gTg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139393575	139393575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	171	1006	0	ENST00000277541.6:c.6071T>C	p.Val2024Ala	p.V2024A	ENST00000277541	NM_017617.3	2024	gTa/gCa																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139410085	139410085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	200	1192	6	ENST00000277541.6:c.1753G>A	p.Ala585Thr	p.A585T	ENST00000277541	NM_017617.3	585	Gcc/Acc																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411783	63411783	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	153	592	0	ENST00000330258.3:c.1384G>T	p.Glu462Ter	p.E462*	ENST00000330258	NM_152424.3	462	Gaa/Taa																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70344018	70344018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	125	524	0	ENST00000374080.3:c.1754G>A	p.Arg585Gln	p.R585Q	ENST00000374080		585	cGa/cAa																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76938406	76938406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	91	501	0	ENST00000373344.5:c.2342G>A	p.Arg781Gln	p.R781Q	ENST00000373344	NM_000489.3	781	cGa/cAa																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123210266	123210266	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	84	436	0	ENST00000218089.9:c.2618T>C	p.Val873Ala	p.V873A	ENST00000218089	NM_001042749.1	873	gTa/gCa																																													NEWRECORD																																		
H3F3A	3020	MSKCC	GRCh37	1	226252163	226252163	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	14	131	0	ENST00000366813.1:c.111G>T	p.Lys37Asn	p.K37N	ENST00000366813		37	aaG/aaT																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0021074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	219	926	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0021074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	80	665	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925328	114925328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	160	731	0	ENST00000543371.1:c.1406G>A	p.Cys469Tyr	p.C469Y	ENST00000543371	NM_001198531.1	469	tGc/tAc																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106196220	106196233	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGACCAGTCATG	CAGGACCAGTCATG	-			P-0021074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	68	347	0	ENST00000380013.4:c.4556_4569del	p.Gly1519AlafsTer54	p.G1519Afs*54	ENST00000380013	NM_001127208.2	1518	tCAGGACCAGTCATG/t																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175192	112175193	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0021074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	61	328	0	ENST00000257430.4:c.3903_3904dup	p.Leu1302ProfsTer4	p.L1302Pfs*4	ENST00000257430	NM_000038.5	1301	acc/aCCcc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	263	912	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
ETV1	2115	MSKCC	GRCh37	7	13971292	13971292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	73	645	0	ENST00000405192.2:c.637C>T	p.Arg213Cys	p.R213C	ENST00000405192	NM_001163147.1	213	Cgc/Tgc																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108204612	108204612	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	43	370	0	ENST00000278616.4:c.7928-1G>A		p.X2643_splice	ENST00000278616	NM_000051.3	2643																																														NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108206581	108206581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	120	457	1	ENST00000278616.4:c.8161G>T	p.Asp2721Tyr	p.D2721Y	ENST00000278616	NM_000051.3	2721	Gac/Tac																																													NEWRECORD																																		
LATS2	26524	MSKCC	GRCh37	13	21549330	21549330	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	97	835	0	ENST00000382592.4:c.2946C>G	p.Ile982Met	p.I982M	ENST00000382592	NM_014572.2	982	atC/atG																																													NEWRECORD																																		
FOXO1	2308	MSKCC	GRCh37	13	41134463	41134463	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199719831		P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	143	742	1	ENST00000379561.5:c.1165G>A	p.Val389Ile	p.V389I	ENST00000379561	NM_002015.3	389	Gtt/Att																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42040892	42040892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	161	741	2	ENST00000219905.7:c.5270G>T	p.Arg1757Leu	p.R1757L	ENST00000219905	NM_001164273.1	1757	cGt/cTt																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23634384	23634384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	159	871	1	ENST00000261584.4:c.2902G>T	p.Ala968Ser	p.A968S	ENST00000261584	NM_024675.3	968	Gct/Tct																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16012199	16012199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	93	715	0	ENST00000268712.3:c.2083G>A	p.Asp695Asn	p.D695N	ENST00000268712	NM_006311.3	695	Gat/Aat																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41256249	41256249	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	74	554	0	ENST00000357654.3:c.331G>T	p.Glu111Ter	p.E111*	ENST00000357654	NM_007294.3	111	Gaa/Taa																																													NEWRECORD																																		
CHEK2	11200	MSKCC	GRCh37	22	29121316	29121317	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTT			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	126	981	0	ENST00000328354.6:c.356_358dup	p.Lys119dup	p.K119dup	ENST00000328354	NM_007194.3	119	agc/aAAAgc																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134670378	134670378	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	140	594	0	ENST00000398015.3:c.289A>T	p.Ser97Cys	p.S97C	ENST00000398015	NM_004441.4	97	Agc/Tgc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178928061	178928061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	93	794	0	ENST00000263967.3:c.1339C>T	p.Pro447Ser	p.P447S	ENST00000263967	NM_006218.2	447	Cca/Tca																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47039888	47039888	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	92	937	2	ENST00000329236.7:c.997C>T	p.Gln333Ter	p.Q333*	ENST00000329236	NM_001204466.1	333	Cag/Tag																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89828421	89828423	+	stop_gained	Nonsense_Mutation	ONP	GGT	GGT	AGA			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	108	583	1	ENST00000389301.3:c.2786_2788delinsTCT	p.Tyr929_Gln930delinsPheTer	p.Y929_Q930delinsF*	ENST00000389301	NM_000135.2	929	tACCaa/tTCTaa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	207	1116	0	ENST00000269305.4:c.643A>G	p.Ser215Gly	p.S215G	ENST00000269305	NM_001126112.2	215	Agt/Ggt																																													NEWRECORD																																		
MYOD1	4654	MSKCC	GRCh37	11	17741684	17741684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	67	726	5	ENST00000250003.3:c.355C>T	p.Arg119Trp	p.R119W	ENST00000250003	NM_002478.4	119	Cgg/Tgg																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46125036	46125036	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	70	525	3	ENST00000334344.6:c.223G>T	p.Glu75Ter	p.E75*	ENST00000334344	NM_152641.2	75	Gag/Tag																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46246497	46246509	+	frameshift_variant	Frame_Shift_Del	DEL	CCAAATAAAGTAG	CCAAATAAAGTAG	-			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	43	388	0	ENST00000334344.6:c.4591_4603del	p.Pro1531GlufsTer31	p.P1531Efs*31	ENST00000334344	NM_152641.2	1531	CCAAATAAAGTAGga/ga																																													NEWRECORD																																		
HNF1A	6927	MSKCC	GRCh37	12	121435390	121435390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	109	1184	2	ENST00000257555.6:c.1423C>A	p.Pro475Thr	p.P475T	ENST00000257555		475	Ccg/Acg																																													NEWRECORD																																		
NFKBIA	4792	MSKCC	GRCh37	14	35872934	35872934	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	141	857	0	ENST00000216797.5:c.298G>C	p.Asp100His	p.D100H	ENST00000216797	NM_020529.2	100	Gac/Cac																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95562480	95562480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	54	713	2	ENST00000343455.3:c.4777G>A	p.Val1593Ile	p.V1593I	ENST00000343455	NM_177438.2	1593	Gta/Ata																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42034837	42034837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	145	839	0	ENST00000219905.7:c.4681del	p.Thr1561ProfsTer15	p.T1561Pfs*15	ENST00000219905	NM_001164273.1	1560	cAa/ca																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29550586	29550586	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	45	346	0	ENST00000358273.4:c.1845+1G>T		p.X615_splice	ENST00000358273	NM_001042492.2	615																																														NEWRECORD																																		
BCL2	596	MSKCC	GRCh37	18	60985602	60985602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	69	329	0	ENST00000333681.4:c.298G>T	p.Ala100Ser	p.A100S	ENST00000333681		100	Gcc/Tcc																																													NEWRECORD																																		
AKT2	208	MSKCC	GRCh37	19	40744873	40744873	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	58	983	0	ENST00000392038.2:c.647A>G	p.Lys216Arg	p.K216R	ENST00000392038	NM_001626.4	216	aAg/aGg																																													NEWRECORD																																		
AURKA	6790	MSKCC	GRCh37	20	54956497	54956497	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	126	705	0	ENST00000312783.6:c.697A>T	p.Thr233Ser	p.T233S	ENST00000312783	NM_198436.1	233	Act/Tct																																													NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185200167	185200167	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	141	970	1	ENST00000265026.3:c.2824G>T	p.Asp942Tyr	p.D942Y	ENST00000265026	NM_004721.4	942	Gac/Tac																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106197171	106197171	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	64	557	1	ENST00000380013.4:c.5504G>T	p.Gly1835Val	p.G1835V	ENST00000380013	NM_001127208.2	1835	gGt/gTt																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187530351	187530351	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	86	535	0	ENST00000441802.2:c.10192C>G	p.Leu3398Val	p.L3398V	ENST00000441802	NM_005245.3	3398	Ctc/Gtc																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66765346	66765347	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	59	625	1	ENST00000374690.3:c.358_359delinsAT	p.Gln120Met	p.Q120M	ENST00000374690	NM_000044.3	120	CAg/ATg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0021116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	450	983	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0021116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	23	1034	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0021116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	286	1075	2	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40735458	40735458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	202	1026	0	ENST00000373198.4:c.3415C>T	p.Arg1139Trp	p.R1139W	ENST00000373198	NM_133170.3	1139	Cgg/Tgg																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0021116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	492	802	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128202	112128203	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TAGTC			P-0021116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	173	612	0	ENST00000257430.4:c.705_706insTAGTC	p.Gln236Ter	p.Q236*	ENST00000257430	NM_000038.5	235	-/TAGTC																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398123121		P-0021116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	104	368	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																													NEWRECORD																																		
DAXX	1616	MSKCC	GRCh37	6	33287518	33287518	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	511	977	2	ENST00000374542.5:c.1579A>G	p.Ile527Val	p.I527V	ENST00000374542	NM_001141970.1	527	Ata/Gta																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39932980	39932980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	239	955	3	ENST00000378444.4:c.1619G>A	p.Arg540Gln	p.R540Q	ENST00000378444	NM_001123385.1	540	cGg/cAg																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	224	872	3	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	329	1137	14	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	196	748	3	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398220	25398220	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	218	870	1	ENST00000256078.4:c.99T>A	p.Asp33Glu	p.D33E	ENST00000256078	NM_033360.2	33	gaT/gaA																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	145	593	5	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604745	48604745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	191	726	4	ENST00000342988.3:c.1567T>C	p.Cys523Arg	p.C523R	ENST00000342988	NM_005359.5	523	Tgc/Cgc																																													NEWRECORD																																		
SH2B3	10019	MSKCC	GRCh37	12	111856019	111856019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	257	861	6	ENST00000341259.2:c.70C>T	p.Arg24Trp	p.R24W	ENST00000341259	NM_005475.2	24	Cgg/Tgg																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119829	70119830	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	418	1245	3	ENST00000245479.2:c.832_833dup	p.Ser279Ter	p.S279*	ENST00000245479	NM_000346.3	277	-/CT																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78931459	78931459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	104	1091	0	ENST00000306801.3:c.3406G>A	p.Gly1136Ser	p.G1136S	ENST00000306801	NM_020761.2	1136	Ggc/Agc																																													NEWRECORD																																		
EIF4E	1977	MSKCC	GRCh37	4	99812467	99812467	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	204	666	1	ENST00000280892.6:c.202T>C	p.Phe68Leu	p.F68L	ENST00000280892	NM_001130678.1	68	Ttt/Ctt																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131940545	131940545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	212	645	2	ENST00000265335.6:c.2572G>A	p.Glu858Lys	p.E858K	ENST00000265335		858	Gaa/Aaa																																													NEWRECORD																																		
DAXX	1616	MSKCC	GRCh37	6	33290660	33290660	+	5_prime_UTR_variant	5'UTR	SNP	C	C	A			P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	37	963	0	ENST00000374542.5:c.-74G>T		p.*25*	ENST00000374542	NM_001141970.1																																															NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	150004221	150004221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	75	623	0	ENST00000253339.5:c.2004G>A	p.Met668Ile	p.M668I	ENST00000253339		668	atG/atA																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912660		P-0021083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	123	971	1	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175754	112175754	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0021083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	28	540	0	ENST00000257430.4:c.4463T>A	p.Leu1488Ter	p.L1488*	ENST00000257430	NM_000038.5	1488	tTa/tAa																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061227	38061235	+	inframe_deletion	In_Frame_Del	DEL	GAACATGTT	GAACATGTT	-			P-0021083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	47	789	0	ENST00000250448.2:c.754_762del	p.Asn252_Phe254del	p.N252_F254del	ENST00000250448	NM_004496.3	252	AACATGTTC/-																																													NEWRECORD																																		
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0021122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	13	917	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	73	818	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	177	990	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44928872	44928872	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs755440519		P-0021095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	73	620	2	ENST00000377967.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000377967	NM_021140.2	658	Cga/Tga																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29490337	29490337	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	228	648	1	ENST00000358273.4:c.425del	p.Leu142TyrfsTer23	p.L142Yfs*23	ENST00000358273	NM_001042492.2	141	gTt/gt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0021123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	53	510	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																													NEWRECORD																																		
SMARCD1	6602	MSKCC	GRCh37	12	50480551	50480552	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0021123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	75	714	0	ENST00000394963.4:c.421_422del	p.Val141ThrfsTer13	p.V141Tfs*13	ENST00000394963	NM_003076.4	141	GTa/a																																													NEWRECORD																																		
BAP1	8314	MSKCC	GRCh37	3	52442578	52442578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	44	584	0	ENST00000460680.1:c.167G>A	p.Arg56His	p.R56H	ENST00000460680	NM_004656.3	56	cGc/cAc																																													NEWRECORD																																		
BAP1	8314	MSKCC	GRCh37	3	52442568	52442573	+	inframe_deletion	In_Frame_Del	DEL	CCGGGA	CCGGGA	-			P-0021123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	41	614	0	ENST00000460680.1:c.172_177del	p.Ser58_Arg59del	p.S58_R59del	ENST00000460680	NM_004656.3	58	TCCCGG/-																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0021034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	200	934	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47044711	47044711	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	95	1170	0	ENST00000329236.7:c.1878del	p.Glu627ArgfsTer97	p.E627Rfs*97	ENST00000329236	NM_001204466.1	626	gCc/gc																																													NEWRECORD																																		
PIK3CD	5293	MSKCC	GRCh37	1	9776131	9776131	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	60	952	0	ENST00000377346.4:c.595A>C	p.Ser199Arg	p.S199R	ENST00000377346	NM_005026.3	199	Agc/Cgc																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108150300	108150301	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0021034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	179	739	1	ENST00000278616.4:c.3367_3368delinsAA	p.Ala1123Lys	p.A1123K	ENST00000278616	NM_000051.3	1123	GCa/AAa																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108160451	108160466	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAAGTGGCTTAGGA	AAAAAGTGGCTTAGGA	-			P-0021034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	91	926	0	ENST00000278616.4:c.4359_4374del	p.Ile1453MetfsTer15	p.I1453Mfs*15	ENST00000278616	NM_000051.3	1453	atAAAAAGTGGCTTAGGA/at																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37882020	37882020	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201399875		P-0021034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	81	1025	4	ENST00000269571.5:c.2786G>A	p.Arg929Gln	p.R929Q	ENST00000269571		929	cGg/cAg																																													NEWRECORD																																		
PIK3C3	5289	MSKCC	GRCh37	18	39637907	39637907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	161	862	1	ENST00000262039.4:c.2324C>T	p.Pro775Leu	p.P775L	ENST00000262039	NM_002647.2	775	cCa/cTa																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47155393	47155393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	82	943	0	ENST00000409792.3:c.4688G>T	p.Gly1563Val	p.G1563V	ENST00000409792	NM_014159.6	1563	gGc/gTc																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47164373	47164403	+	frameshift_variant	Frame_Shift_Del	DEL	ACTGTTTGATTTCTTCATTTAATTCTGTACA	ACTGTTTGATTTCTTCATTTAATTCTGTACA	-			P-0021034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	58	595	0	ENST00000409792.3:c.1723_1753del	p.Cys575LeufsTer16	p.C575Lfs*16	ENST00000409792	NM_014159.6	575	TGTACAGAATTAAATGAAGAAATCAAACAGTct/ct																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1131691025		P-0021008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	371	632	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157099610	157099610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	50	140	0	ENST00000346085.5:c.547G>A	p.Gly183Ser	p.G183S	ENST00000346085	NM_020732.3	183	Ggc/Agc																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8319875	8319875	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	314	585	0	ENST00000356435.5:c.5626G>T	p.Val1876Phe	p.V1876F	ENST00000356435		1876	Gtc/Ttc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	33	761	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	35	761	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
HIST1H3J	8356	MSKCC	GRCh37	6	27858327	27858327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	50	642	2	ENST00000359303.2:c.244G>A	p.Asp82Asn	p.D82N	ENST00000359303	NM_003535.2	82	Gac/Aac																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42041800	42041800	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	69	509	0	ENST00000219905.7:c.5995G>T	p.Glu1999Ter	p.E1999*	ENST00000219905	NM_001164273.1	1999	Gag/Tag																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47041439	47041439	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0020717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	49	738	1	ENST00000329236.7:c.1549C>T	p.Gln517Ter	p.Q517*	ENST00000329236	NM_001204466.1	517	Cag/Tag																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76776309	76776309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	80	948	0	ENST00000373344.5:c.7157G>T	p.Arg2386Leu	p.R2386L	ENST00000373344	NM_000489.3	2386	cGa/cTa																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	62	707	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32914581	32914581	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	85	1106	0	ENST00000380152.3:c.6089A>T	p.Asn2030Ile	p.N2030I	ENST00000380152		2030	aAt/aTt																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10270368	10270368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	109	1100	0	ENST00000340748.4:c.1198G>A	p.Glu400Lys	p.E400K	ENST00000340748		400	Gag/Aag																																													NEWRECORD																																		
SOS1	6654	MSKCC	GRCh37	2	39214624	39214624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	86	932	0	ENST00000402219.2:c.3500C>T	p.Ser1167Leu	p.S1167L	ENST00000402219	NM_005633.3	1167	tCa/tTa																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47637282	47637282	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	134	1046	0	ENST00000233146.2:c.416A>G	p.Asn139Ser	p.N139S	ENST00000233146	NM_000251.2	139	aAt/aGt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952108	178952108	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	58	660	0	ENST00000263967.3:c.3163A>T	p.Met1055Leu	p.M1055L	ENST00000263967	NM_006218.2	1055	Atg/Ttg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	321	755	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023008	27023010	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0020990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	11	47	0	ENST00000324856.7:c.126_128delGGC	p.Ala45del	p.A45del	ENST00000324856	NM_006015.4	38	gaGGCg/gag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0020990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	201	423	3	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56486587	56486587	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	161	764	0	ENST00000267101.3:c.1166C>A	p.Thr389Lys	p.T389K	ENST00000267101	NM_001982.3	389	aCa/aAa																																													NEWRECORD																																		
NFKBIA	4792	MSKCC	GRCh37	14	35873625	35873626	+	inframe_insertion,splice_region_variant	In_Frame_Ins	INS	-	-	GTCCCCGTCCTCGGT			P-0020990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	64	379	0	ENST00000216797.5:c.211_225dup	p.Thr71_Asp75dup	p.T71_D75dup	ENST00000216797	NM_020529.2	71	-/ACCGAGGACGGGGAC																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578391	7578393	+	frameshift_variant	Frame_Shift_Del	DEL	TCA	TCA	AT			P-0020990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	412	743	0	ENST00000269305.4:c.537_539delinsAT	p.His179GlnfsTer68	p.H179Qfs*68	ENST00000269305	NM_001126112.2	179	caTGAg/caATg																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0021012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	18	725	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175288	112175288	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0021012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	25	335	0	ENST00000257430.4:c.3997A>T	p.Lys1333Ter	p.K1333*	ENST00000257430	NM_000038.5	1333	Aaa/Taa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579547	7579547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	101	901	1	ENST00000269305.4:c.140del	p.Pro47ArgfsTer76	p.P47Rfs*76	ENST00000269305	NM_001126112.2	47	cCg/cg																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70120240	70120241	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	99	1030	0	ENST00000245479.2:c.1246dup	p.Gln416ProfsTer162	p.Q416Pfs*162	ENST00000245479	NM_000346.3	414	-/C																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0020674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	32	692	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0020994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	386	782	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																													NEWRECORD																																		
CSF3R	1441	MSKCC	GRCh37	1	36935319	36935319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	391	851	0	ENST00000361632.4:c.1408G>A	p.Ala470Thr	p.A470T	ENST00000361632		470	Gcg/Acg																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225379426	225379427	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	487	891	0	ENST00000264414.4:c.441dup	p.Arg148SerfsTer11	p.R148Sfs*11	ENST00000264414	NM_003590.4	147	-/T																																													NEWRECORD																																		
JAK2	3717	MSKCC	GRCh37	9	5077570	5077570	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	332	580	0	ENST00000381652.3:c.1982T>C	p.Met661Thr	p.M661T	ENST00000381652	NM_004972.3	661	aTg/aCg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	99	855	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	232	880	1	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0020952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	216	531	2	ENST00000329236.7:c.1459+1G>A		p.X487_splice	ENST00000329236	NM_001204466.1	487																																														NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11138473	11138473	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	98	659	1	ENST00000344626.4:c.3229C>T	p.Arg1077Ter	p.R1077*	ENST00000344626	NM_003072.3	1077	Cga/Tga																																													NEWRECORD																																		
SPRED1	161742	MSKCC	GRCh37	15	38643807	38643807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	248	949	2	ENST00000299084.4:c.1277G>T	p.Cys426Phe	p.C426F	ENST00000299084	NM_152594.2	426	tGc/tTc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579427	7579427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	91	913	3	ENST00000269305.4:c.260C>T	p.Pro87Leu	p.P87L	ENST00000269305	NM_001126112.2	87	cCa/cTa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577599	7577600	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	98	771	0	ENST00000269305.4:c.681dup	p.Asp228Ter	p.D228*	ENST00000269305	NM_001126112.2	227	-/T																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48026137	48026137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	55	544	0	ENST00000234420.5:c.1015G>A	p.Ala339Thr	p.A339T	ENST00000234420	NM_000179.2	339	Gct/Act																																													NEWRECORD																																		
CRLF2	64109	MSKCC	GRCh37	X	1325416	1325416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	66	863	0	ENST00000381566.1:c.259G>A	p.Asp87Asn	p.D87N	ENST00000381566		87	Gac/Aac																																													NEWRECORD																																		
RPS6KB2	6199	MSKCC	GRCh37	11	67200860	67200860	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1203	78	895	0	ENST00000312629.5:c.851del	p.Gly284AlafsTer21	p.G284Afs*21	ENST00000312629	NM_003952.2	283	aGg/ag																																													NEWRECORD																																		
KMT2A	4297	MSKCC	GRCh37	11	118343775	118343775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	511	836	0	ENST00000534358.1:c.1901C>T	p.Ser634Leu	p.S634L	ENST00000534358	NM_005933.3	634	tCa/tTa																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32912839	32912839	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	164	590	0	ENST00000380152.3:c.4347C>G	p.Phe1449Leu	p.F1449L	ENST00000380152		1449	ttC/ttG																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32912895	32912895	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	162	521	0	ENST00000380152.3:c.4403C>G	p.Ser1468Cys	p.S1468C	ENST00000380152		1468	tCt/tGt																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78617548	78617548	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	44	706	0	ENST00000306801.3:c.286C>G	p.Gln96Glu	p.Q96E	ENST00000306801	NM_020761.2	96	Cag/Gag																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123205017	123205017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	52	521	2	ENST00000218089.9:c.2377G>A	p.Asp793Asn	p.D793N	ENST00000218089	NM_001042749.1	793	Gat/Aat																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10599964	10599965	+	missense_variant	Missense_Mutation	DNP	CG	CG	GA			P-0021054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	256	1174	1	ENST00000171111.5:c.1611_1612delinsTC	p.Asp538His	p.D538H	ENST00000171111	NM_203500.1	537	taCGat/taTCat																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578376	7578379	+	frameshift_variant	Frame_Shift_Del	DEL	CTAT	CTAT	-			P-0020954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	182	736	0	ENST00000269305.4:c.551_554delATAG	p.Asp184AlafsTer62	p.D184Afs*62	ENST00000269305	NM_001126112.2	184	gATAGc/gc																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41268766	41268766	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	156	717	1	ENST00000349496.5:c.1004A>T	p.Lys335Ile	p.K335I	ENST00000349496	NM_001904.3	335	aAa/aTa																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	159	607	1	ENST00000349496.5:c.1982G>A	p.Arg661Gln	p.R661Q	ENST00000349496	NM_001904.3	661	cGa/cAa																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52651532	52651532	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	137	692	2	ENST00000394830.3:c.1564C>T	p.Arg522Ter	p.R522*	ENST00000394830	NM_018313.4	522	Cga/Tga																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0020954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	138	658	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1220717	1220717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0020955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	306	744	3	ENST00000326873.7:c.734+1G>T		p.X245_splice	ENST00000326873	NM_000455.4	245																																														NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29657313	29657313	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0020955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	102	670	1	ENST00000358273.4:c.5610-1G>T		p.X1870_splice	ENST00000358273	NM_001042492.2	1870																																														NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108143289	108143291	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0020955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	188	595	0	ENST00000278616.4:c.3108_3110del	p.Ser1037del	p.S1037del	ENST00000278616	NM_000051.3	1036	ttCTCt/ttt																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73335623	73335623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	63	444	1	ENST00000377767.4:c.2548G>T	p.Ala850Ser	p.A850S	ENST00000377767	NM_014953.3	850	Gcc/Tcc																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73349420	73349420	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	91	692	0	ENST00000377767.4:c.916T>C	p.Ser306Pro	p.S306P	ENST00000377767	NM_014953.3	306	Tct/Cct																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29483016	29483016	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	165	589	0	ENST00000358273.4:c.76G>T	p.Gly26Ter	p.G26*	ENST00000358273	NM_001042492.2	26	Gga/Tga																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40727066	40727066	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	89	585	0	ENST00000373198.4:c.3898G>T	p.Ala1300Ser	p.A1300S	ENST00000373198	NM_133170.3	1300	Gcc/Tcc																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81339481	81339481	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	169	647	0	ENST00000222390.5:c.1523T>A	p.Met508Lys	p.M508K	ENST00000222390	NM_000601.4	508	aTg/aAg																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47044925	47044925	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	300	509	3	ENST00000329236.7:c.2017G>T	p.Glu673Ter	p.E673*	ENST00000329236	NM_001204466.1	673	Gag/Tag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	72	601	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0020960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	144	737	2	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																													NEWRECORD																																		
FYN	2534	MSKCC	GRCh37	6	112015732	112015732	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	60	442	0	ENST00000368678.4:c.1111-1G>A		p.X371_splice	ENST00000368678		371																																														NEWRECORD																																		
TEK	7010	MSKCC	GRCh37	9	27206782	27206782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	103	449	0	ENST00000380036.4:c.2567G>A	p.Arg856Lys	p.R856K	ENST00000380036	NM_000459.3	856	aGa/aAa																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44950040	44950041	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	54	321	0	ENST00000377967.4:c.3811dup	p.Val1271GlyfsTer20	p.V1271Gfs*20	ENST00000377967	NM_021140.2	1270	atg/atGg																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40710578	40710578	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	83	801	0	ENST00000373198.4:c.4273G>C	p.Val1425Leu	p.V1425L	ENST00000373198	NM_133170.3	1425	Gtg/Ctg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	99	921	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0020922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	79	837	4	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41275669	41275669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	76	702	1	ENST00000349496.5:c.1564G>A	p.Ala522Thr	p.A522T	ENST00000349496	NM_001904.3	522	Gca/Aca																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106504	27106505	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	95	930	0	ENST00000324856.7:c.6117dup	p.Gly2040ArgfsTer59	p.G2040Rfs*59	ENST00000324856	NM_006015.4	2039	caa/cAaa																																													NEWRECORD																																		
PRKD1	5587	MSKCC	GRCh37	14	30107994	30107994	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	98	838	0	ENST00000331968.5:c.813C>G	p.His271Gln	p.H271Q	ENST00000331968	NM_002742.2	271	caC/caG																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	30143176	30143176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	69	833	0	ENST00000389048.3:c.350C>T	p.Pro117Leu	p.P117L	ENST00000389048	NM_004304.4	117	cCg/cTg																																													NEWRECORD																																		
RHOA	387	MSKCC	GRCh37	3	49412970	49412970	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	109	1018	0	ENST00000418115.1:c.53A>C	p.Lys18Thr	p.K18T	ENST00000418115	NM_001664.2	18	aAg/aCg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs17849781		P-0021033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	158	1018	2	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0021033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	51	799	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174885	112174886	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0021033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	71	528	0	ENST00000257430.4:c.3595_3596del	p.Lys1199GlufsTer8	p.K1199Efs*8	ENST00000257430	NM_000038.5	1198	tcAAag/tcag																																													NEWRECORD																																		
PREX2	80243	MSKCC	GRCh37	8	68995569	68995569	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	60	978	3	ENST00000288368.4:c.1973C>A	p.Ser658Ter	p.S658*	ENST00000288368	NM_024870.2	658	tCg/tAg																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	148	443	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	91	711	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	155	882	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	186	439	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																													NEWRECORD																																		
EZH2	2146	MSKCC	GRCh37	7	148511094	148511094	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	106	518	0	ENST00000320356.2:c.1808del	p.Asn603MetfsTer72	p.N603Mfs*72	ENST00000320356	NM_004456.4	603	aAt/at																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	114	1018	4	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																													NEWRECORD																																		
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	137	1001	7	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	243	621	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	98	684	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	103	601	1	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																													NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64138915	64138915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	156	931	2	ENST00000334205.4:c.2287delC	p.Arg763AlafsTer21	p.R763Afs*21	ENST00000334205	NM_003942.2	761	gCc/gc																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42798822	42798822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	387	1042	2	ENST00000575354.2:c.4394G>A	p.Arg1465His	p.R1465H	ENST00000575354	NM_015125.3	1465	cGc/cAc																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67589582	67589582	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	78	454	0	ENST00000274335.5:c.1345T>A	p.Leu449Ile	p.L449I	ENST00000274335		449	Tta/Ata																																													NEWRECORD																																		
RAF1	5894	MSKCC	GRCh37	3	12626461	12626461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	91	701	0	ENST00000251849.4:c.1688G>A	p.Arg563Gln	p.R563Q	ENST00000251849	NM_002880.3	563	cGa/cAa																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	11984672	11984672	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	61	319	0	ENST00000353533.5:c.219-1G>C		p.X73_splice	ENST00000353533	NM_003010.3	73																																														NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	442811	442811	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	72	481	0	ENST00000399788.2:c.1495del	p.Glu499SerfsTer19	p.E499Sfs*19	ENST00000399788	NM_001042603.1	499	Gag/ag																																													NEWRECORD																																		
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	219	1324	8	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																													NEWRECORD																																		
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	144	908	6	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																													NEWRECORD																																		
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	160	893	8	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																													NEWRECORD																																		
TP53BP1	7158	MSKCC	GRCh37	15	43708596	43708596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	132	715	0	ENST00000382044.4:c.4700G>T	p.Arg1567Met	p.R1567M	ENST00000382044	NM_001141980.1	1567	aGg/aTg																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	120	896	1	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5223086	5223086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	197	1181	5	ENST00000357368.4:c.2717C>T	p.Ala906Val	p.A906V	ENST00000357368	NM_002850.3	906	gCg/gTg																																													NEWRECORD																																		
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	223	1244	3	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																													NEWRECORD																																		
TAP1	6890	MSKCC	GRCh37	6	32814948	32814948	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	137	839	0	ENST00000354258.4:c.2117del	p.Gly706ValfsTer12	p.G706Vfs*12	ENST00000354258	NM_000593.5	706	gGt/gt																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	114	830	3	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																													NEWRECORD																																		
HLA-B	3106	MSKCC	GRCh37	6	31323362	31323363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	136	730	0	ENST00000412585.2:c.626dupC	p.Thr211AspfsTer10	p.T211Dfs*10	ENST00000412585	NM_005514.6	209	cca/ccCa																																													NEWRECORD																																		
JUN	3725	MSKCC	GRCh37	1	59248285	59248285	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	28	143	0	ENST00000371222.2:c.458del	p.Gly153AlafsTer29	p.G153Afs*29	ENST00000371222	NM_002228.3	153	gGc/gc																																													NEWRECORD																																		
TNFRSF14	8764	MSKCC	GRCh37	1	2494665	2494665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	151	973	3	ENST00000355716.4:c.805G>A	p.Val269Met	p.V269M	ENST00000355716	NM_003820.2	269	Gtg/Atg																																													NEWRECORD																																		
CSF3R	1441	MSKCC	GRCh37	1	36941052	36941052	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	178	1016	2	ENST00000361632.4:c.287A>G	p.Gln96Arg	p.Q96R	ENST00000361632		96	cAg/cGg																																													NEWRECORD																																		
RAD54L	8438	MSKCC	GRCh37	1	46726267	46726267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	146	784	2	ENST00000371975.4:c.461G>A	p.Arg154Gln	p.R154Q	ENST00000371975	NM_003579.3	154	cGg/cAg																																													NEWRECORD																																		
JUN	3725	MSKCC	GRCh37	1	59248010	59248011	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	149	907	0	ENST00000371222.2:c.732dup	p.Ile245HisfsTer65	p.I245Hfs*65	ENST00000371222	NM_002228.3	244	-/C																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120478217	120478217	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	71	510	0	ENST00000256646.2:c.3533G>T	p.Gly1178Val	p.G1178V	ENST00000256646	NM_024408.3	1178	gGc/gTc																																													NEWRECORD																																		
FGF4	2249	MSKCC	GRCh37	11	69588172	69588172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	177	982	1	ENST00000168712.1:c.526G>A	p.Gly176Ser	p.G176S	ENST00000168712	NM_002007.2	176	Ggc/Agc																																													NEWRECORD																																		
CBL	867	MSKCC	GRCh37	11	119158638	119158638	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	151	832	0	ENST00000264033.4:c.2018T>G	p.Ile673Ser	p.I673S	ENST00000264033	NM_005188.3	673	aTt/aGt																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133245474	133245474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	125	769	1	ENST00000320574.5:c.1846C>T	p.Arg616Cys	p.R616C	ENST00000320574	NM_006231.2	616	Cgc/Tgc																																													NEWRECORD																																		
FOXO1	2308	MSKCC	GRCh37	13	41134420	41134420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	145	739	0	ENST00000379561.5:c.1208C>T	p.Pro403Leu	p.P403L	ENST00000379561	NM_002015.3	403	cCg/cTg																																													NEWRECORD																																		
TSHR	7253	MSKCC	GRCh37	14	81422059	81422059	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	117	652	0	ENST00000298171.2:c.35T>C	p.Leu12Pro	p.L12P	ENST00000298171	NM_000369.2	12	cTg/cCg																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72828282	72828282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	156	729	0	ENST00000268489.5:c.8299G>A	p.Gly2767Arg	p.G2767R	ENST00000268489	NM_006885.3	2767	Gga/Aga																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81927337	81927337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	216	928	0	ENST00000359376.3:c.1010G>A	p.Arg337Gln	p.R337Q	ENST00000359376	NM_002661.3	337	cGg/cAg																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89351205	89351205	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	169	904	1	ENST00000301030.4:c.1745A>G	p.Glu582Gly	p.E582G	ENST00000301030	NM_001256183.1	582	gAg/gGg																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15938157	15938157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	130	580	0	ENST00000268712.3:c.7057G>A	p.Val2353Ile	p.V2353I	ENST00000268712	NM_006311.3	2353	Gtc/Atc																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15961294	15961294	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	149	728	0	ENST00000268712.3:c.6095del	p.Pro2032LeufsTer17	p.P2032Lfs*17	ENST00000268712	NM_006311.3	2032	cCt/ct																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17117042	17117042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	167	948	0	ENST00000285071.4:c.1667G>A	p.Gly556Asp	p.G556D	ENST00000285071	NM_144997.5	556	gGc/gAc																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37676243	37676243	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	199	845	1	ENST00000447079.4:c.2998A>G	p.Met1000Val	p.M1000V	ENST00000447079	NM_015083.1	1000	Atg/Gtg																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41246531	41246532	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	78	1010	3	ENST00000357654.3:c.1016dup	p.Val340GlyfsTer6	p.V340Gfs*6	ENST00000357654	NM_007294.3	339	aag/aaAg																																													NEWRECORD																																		
PIK3C3	5289	MSKCC	GRCh37	18	39537693	39537693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	32	450	1	ENST00000262039.4:c.227C>T	p.Thr76Ile	p.T76I	ENST00000262039	NM_002647.2	76	aCa/aTa																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11097659	11097659	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	83	1156	0	ENST00000344626.4:c.839C>A	p.Pro280His	p.P280H	ENST00000344626	NM_003072.3	280	cCt/cAt																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15353959	15353959	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	49	301	1	ENST00000263377.2:c.2921C>A	p.Pro974Gln	p.P974Q	ENST00000263377	NM_058243.2	974	cCg/cAg																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25497933	25497934	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	90	695	0	ENST00000264709.3:c.515dup	p.Gly173TrpfsTer43	p.G173Wfs*43	ENST00000264709	NM_175629.2	172	ggt/ggGt																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25966238	25966238	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	158	772	0	ENST00000435504.4:c.2968A>G	p.Met990Val	p.M990V	ENST00000435504		990	Atg/Gtg																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25966733	25966733	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	115	849	0	ENST00000435504.4:c.2473A>G	p.Ser825Gly	p.S825G	ENST00000435504		825	Agt/Ggt																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29446251	29446251	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	162	816	0	ENST00000389048.3:c.3316A>G	p.Ser1106Gly	p.S1106G	ENST00000389048	NM_004304.4	1106	Agt/Ggt																																													NEWRECORD																																		
XPO1	7514	MSKCC	GRCh37	2	61721099	61721099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	120	723	0	ENST00000401558.2:c.1175C>T	p.Pro392Leu	p.P392L	ENST00000401558	NM_003400.3	392	cCg/cTg																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198288564	198288564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	138	879	3	ENST00000335508.6:c.163G>A	p.Val55Met	p.V55M	ENST00000335508	NM_012433.2	55	Gtg/Atg																																													NEWRECORD																																		
NCOA3	8202	MSKCC	GRCh37	20	46279789	46279789	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	149	656	0	ENST00000371998.3:c.3715C>T	p.Arg1239Ter	p.R1239*	ENST00000371998		1239	Cga/Tga																																													NEWRECORD																																		
MAPK1	5594	MSKCC	GRCh37	22	22160198	22160198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	98	452	0	ENST00000215832.6:c.433G>A	p.Val145Ile	p.V145I	ENST00000215832	NM_002745.4	145	Gtt/Att																																													NEWRECORD																																		
MLH1	4292	MSKCC	GRCh37	3	37035134	37035204	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAAAGAGATGATTGAGAACTGGTACGGAGGGAGTCGAGCCGGGCTCACTTAAGGGCTACGACTTAACGGGC	CAAAGAGATGATTGAGAACTGGTACGGAGGGAGTCGAGCCGGGCTCACTTAAGGGCTACGACTTAACGGGC	AT			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	97	506	2	ENST00000231790.2:c.96_116+50delinsAT		p.X32_splice	ENST00000231790	NM_000249.3	32																																														NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49933438	49933438	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	147	879	1	ENST00000296474.3:c.2752delC	p.Leu918CysfsTer18	p.L918Cfs*18	ENST00000296474	NM_002447.2	918	Ctg/tg																																													NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185165701	185165701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	110	595	0	ENST00000265026.3:c.976C>T	p.Arg326Trp	p.R326W	ENST00000265026	NM_004721.4	326	Cgg/Tgg																																													NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185191001	185191001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1160	254	1292	2	ENST00000265026.3:c.1882T>C	p.Tyr628His	p.Y628H	ENST00000265026	NM_004721.4	628	Tac/Cac																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66286238	66286238	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	92	611	0	ENST00000273854.3:c.1448del	p.Asn483ThrfsTer18	p.N483Tfs*18	ENST00000273854	NM_004439.5	483	aAc/ac																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187538990	187538990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	160	779	1	ENST00000441802.2:c.8750G>A	p.Arg2917Gln	p.R2917Q	ENST00000441802	NM_005245.3	2917	cGa/cAa																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1294318	1294318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	154	882	2	ENST00000310581.5:c.683C>T	p.Ala228Val	p.A228V	ENST00000310581	NM_198253.2	228	gCc/gTc																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1294696	1294696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	166	771	2	ENST00000310581.5:c.305C>T	p.Ala102Val	p.A102V	ENST00000310581	NM_198253.2	102	gCg/gTg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112164604	112164604	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	87	404	0	ENST00000257430.4:c.1682delA	p.Lys561ArgfsTer9	p.K561Rfs*9	ENST00000257430	NM_000038.5	560	Aaa/aa																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30672067	30672067	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	143	1051	0	ENST00000376406.3:c.4893del	p.Lys1632SerfsTer44	p.K1632Sfs*44	ENST00000376406	NM_014641.2	1631	ccC/cc																																													NEWRECORD																																		
HLA-B	3106	MSKCC	GRCh37	6	31323092	31323093	+	splice_donor_variant	Splice_Site	INS	-	-	C			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	128	924	0	ENST00000412585.2:c.895+1dupG		p.X299_splice	ENST00000412585	NM_005514.6	299																																														NEWRECORD																																		
TAP1	6890	MSKCC	GRCh37	6	32818837	32818837	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	170	945	3	ENST00000354258.4:c.1114C>T	p.Arg372Ter	p.R372*	ENST00000354258	NM_000593.5	372	Cga/Tga																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81392174	81392174	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	60	446	0	ENST00000222390.5:c.103del	p.Arg35GlufsTer16	p.R35Efs*16	ENST00000222390	NM_000601.4	35	Aga/ga																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116412639	116412641	+	intron_variant	Intron	DEL	TGT	TGT	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	160	1152	0	ENST00000397752.3:c.3028+600_3028+602del		p.*1010*	ENST00000397752	NM_000245.2																																															NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8486350	8486350	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	48	344	0	ENST00000356435.5:c.2468-1G>A		p.X823_splice	ENST00000356435		823																																														NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0021029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	42	865	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1221995	1221995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	47	845	0	ENST00000326873.7:c.910C>T	p.Arg304Trp	p.R304W	ENST00000326873	NM_000455.4	304	Cgg/Tgg																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8484221	8484221	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	31	751	0	ENST00000356435.5:c.3311C>A	p.Ala1104Glu	p.A1104E	ENST00000356435		1104	gCa/gAa																																													NEWRECORD																																		
GATA1	2623	MSKCC	GRCh37	X	48649598	48649598	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	51	913	1	ENST00000376670.3:c.82C>A	p.Pro28Thr	p.P28T	ENST00000376670	NM_002049.3	28	Cca/Aca																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70349597	70349597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	40	844	2	ENST00000374080.3:c.3759G>T	p.Glu1253Asp	p.E1253D	ENST00000374080		1253	gaG/gaT																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67070640	67070643	+	frameshift_variant	Frame_Shift_Del	DEL	AGAA	AGAA	-			P-0020964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	100	366	0	ENST00000412916.2:c.267_270delAAGA	p.Arg90LysfsTer7	p.R90Kfs*7	ENST00000412916		88	ttAGAA/tt																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115707	8115719	+	frameshift_variant	Frame_Shift_Del	DEL	CAGACCCCTGACT	CAGACCCCTGACT	TCTAAACA			P-0020964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	61	579	4	ENST00000346208.3:c.1053_1065delinsTCTAAACA	p.Arg352LeufsTer17	p.R352Lfs*17	ENST00000346208		351	aaCAGACCCCTGACT/aaTCTAAACA																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115112390	115112390	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	220	829	0	ENST00000257566.3:c.1350del	p.Ala451ArgfsTer181	p.A451Rfs*181	ENST00000257566	NM_016569.3	450	ggC/gg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	33	759	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	32	706	0	ENST00000269305.4:c.538G>T	p.Glu180Ter	p.E180*	ENST00000269305	NM_001126112.2	180	Gag/Tag																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64577330	64577333	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0020939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	533	792	0	ENST00000337652.1:c.249_252delGTCT	p.Ile85SerfsTer33	p.I85Sfs*33	ENST00000337652	NM_130803.2	83	ctGTCT/ct																																													NEWRECORD																																		
DAXX	1616	MSKCC	GRCh37	6	33289247	33289247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	446	547	1	ENST00000374542.5:c.305C>T	p.Ser102Leu	p.S102L	ENST00000374542	NM_001141970.1	102	tCg/tTg																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18435542	18435542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	132	319	0	ENST00000266497.5:c.527C>T	p.Pro176Leu	p.P176L	ENST00000266497		176	cCt/cTt																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116422139	116422139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	461	580	0	ENST00000397752.3:c.3620C>T	p.Ala1207Val	p.A1207V	ENST00000397752	NM_000245.2	1207	gCa/gTa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0020945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1141	54	1249	0	ENST00000269305.4:c.377A>C	p.Tyr126Ser	p.Y126S	ENST00000269305	NM_001126112.2	126	tAc/tCc																																													NEWRECORD																																		
PIK3CD	5293	MSKCC	GRCh37	1	9781844	9781844	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	128	1183	0	ENST00000377346.4:c.1981G>T	p.Ala661Ser	p.A661S	ENST00000377346	NM_005026.3	661	Gcc/Tcc																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18435527	18435527	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	22	369	0	ENST00000266497.5:c.512T>C	p.Phe171Ser	p.F171S	ENST00000266497		171	tTt/tCt																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49424177	49424178	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	39	690	0	ENST00000301067.7:c.13884_13885insT	p.Thr4629TyrfsTer18	p.T4629Yfs*18	ENST00000301067	NM_003482.3	4628	-/T																																													NEWRECORD																																		
SRC	6714	MSKCC	GRCh37	20	36012592	36012592	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	40	920	2	ENST00000358208.4:c.36C>G	p.Ser12Arg	p.S12R	ENST00000358208		12	agC/agG																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55973958	55973958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	51	936	1	ENST00000263923.4:c.1358C>T	p.Pro453Leu	p.P453L	ENST00000263923	NM_002253.2	453	cCg/cTg																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176639068	176639068	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	51	845	0	ENST00000439151.2:c.3668A>G	p.His1223Arg	p.H1223R	ENST00000439151	NM_022455.4	1223	cAt/cGt																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	150004220	150004220	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	34	560	0	ENST00000253339.5:c.2005A>T	p.Met669Leu	p.M669L	ENST00000253339		669	Atg/Ttg																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151891654	151891654	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0020945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	25	398	2	ENST00000262189.6:c.4379-1G>T		p.X1460_splice	ENST00000262189	NM_170606.2	1460																																														NEWRECORD																																		
PREX2	80243	MSKCC	GRCh37	8	69011949	69011950	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0020945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	66	1190	0	ENST00000288368.4:c.2588_2589del	p.Phe863CysfsTer12	p.F863Cfs*12	ENST00000288368	NM_024870.2	862	caTTtt/catt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0020943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	217	912	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115715	8115715	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	161	476	0	ENST00000346208.3:c.1061del	p.Leu354ArgfsTer3	p.L354Rfs*3	ENST00000346208		354	cTg/cg																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115118896	115118896	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	60	538	0	ENST00000257566.3:c.445T>A	p.Tyr149Asn	p.Y149N	ENST00000257566	NM_016569.3	149	Tac/Aac																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67063386	67063386	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0020943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	255	661	0	ENST00000412916.2:c.76G>T	p.Glu26Ter	p.E26*	ENST00000412916		26	Gag/Tag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0020944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	55	848	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs137853076		P-0020944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	76	1119	0	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1221975	1221975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	67	1127	0	ENST00000326873.7:c.890G>A	p.Arg297Lys	p.R297K	ENST00000326873	NM_000455.4	297	aGg/aAg																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46287468	46287469	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	30	599	0	ENST00000334344.6:c.5333dup	p.Asn1778LysfsTer4	p.N1778Kfs*4	ENST00000334344	NM_152641.2	1776	tta/ttAa																																													NEWRECORD																																		
FOXO1	2308	MSKCC	GRCh37	13	41134364	41134364	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	53	623	0	ENST00000379561.5:c.1264C>T	p.Gln422Ter	p.Q422*	ENST00000379561	NM_002015.3	422	Caa/Taa																																													NEWRECORD																																		
NKX2-1	7080	MSKCC	GRCh37	14	36986783	36986784	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	25	356	0	ENST00000354822.5:c.905dup	p.Ala304CysfsTer135	p.A304Cfs*135	ENST00000354822	NM_001079668.2	302	gcg/gcCg																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295077	1295098	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCTCGGCAGCGGGGAGCGCG	CGGCTCGGCAGCGGGGAGCGCG	-			P-0020944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	21	217	0	ENST00000310581.5:c.7_28del	p.Arg3CysfsTer68	p.R3Cfs*68	ENST00000310581	NM_198253.2	3	CGCGCTCCCCGCTGCCGAGCCGtg/tg																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140477806	140477806	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	40	782	0	ENST00000288602.6:c.1502A>T	p.Glu501Val	p.E501V	ENST00000288602	NM_004333.4	501	gAa/gTa																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72991757	72991758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	36	852	2	ENST00000268489.5:c.2287dupG	p.Glu763GlyfsTer26	p.E763Gfs*26	ENST00000268489	NM_006885.3	763	gag/gGag																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115109918	115109918	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	265	1227	1	ENST00000257566.3:c.1960del	p.Ser654ValfsTer235	p.S654Vfs*235	ENST00000257566	NM_016569.3	654	Agt/gt																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115110076	115110082	+	frameshift_variant	Frame_Shift_Del	DEL	AACAGGC	AACAGGC	-			P-0020912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	338	1526	0	ENST00000257566.3:c.1796_1802del	p.Ser599ThrfsTer31	p.S599Tfs*31	ENST00000257566	NM_016569.3	599	aGCCTGTTc/ac																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68847298	68847299	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	223	1018	1	ENST00000261769.5:c.1221dup	p.Ala408SerfsTer11	p.A408Sfs*11	ENST00000261769	NM_004360.3	407	cca/ccAa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112177827	112177827	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	36	555	0	ENST00000257430.4:c.6536A>G	p.Lys2179Arg	p.K2179R	ENST00000257430	NM_000038.5	2179	aAa/aGa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1185	166	890	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
SLX4	84464	MSKCC	GRCh37	16	3640328	3640328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1394	226	1100	0	ENST00000294008.3:c.3311G>A	p.Arg1104Gln	p.R1104Q	ENST00000294008	NM_032444.2	1104	cGg/cAg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577541	7577541	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	229	864	0	ENST00000269305.4:c.740del	p.Asn247ThrfsTer98	p.N247Tfs*98	ENST00000269305	NM_001126112.2	247	aAc/ac																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	132	988	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0020790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	138	1145	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48934201	48934201	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	90	1008	0	ENST00000267163.4:c.656del	p.Met219SerfsTer45	p.M219Sfs*45	ENST00000267163	NM_000321.2	219	aTg/ag																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44910994	44910994	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0020790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	109	905	0	ENST00000377967.4:c.695T>A	p.Leu232Ter	p.L232*	ENST00000377967	NM_021140.2	232	tTg/tAg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	86	908	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
VTCN1	79679	MSKCC	GRCh37	1	117695766	117695766	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	48	692	1	ENST00000369458.3:c.671C>A	p.Ser224Tyr	p.S224Y	ENST00000369458	NM_024626.3	224	tCc/tAc																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108205754	108205754	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	43	634	0	ENST00000278616.4:c.8069T>C	p.Phe2690Ser	p.F2690S	ENST00000278616	NM_000051.3	2690	tTt/tCt																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49434404	49434404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	77	987	0	ENST00000301067.7:c.7149G>T	p.Leu2383Phe	p.L2383F	ENST00000301067	NM_003482.3	2383	ttG/ttT																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23647368	23647368	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	91	934	0	ENST00000261584.4:c.499G>T	p.Asp167Tyr	p.D167Y	ENST00000261584	NM_024675.3	167	Gat/Tat																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17117027	17117027	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	94	932	0	ENST00000285071.4:c.1682A>G	p.Tyr561Cys	p.Y561C	ENST00000285071	NM_144997.5	561	tAc/tGc																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41243911	41243911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	72	952	1	ENST00000357654.3:c.3637G>A	p.Glu1213Lys	p.E1213K	ENST00000357654	NM_007294.3	1213	Gaa/Aaa																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59857649	59857649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	76	587	1	ENST00000259008.2:c.1908G>T	p.Glu636Asp	p.E636D	ENST00000259008	NM_032043.2	636	gaG/gaT																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50920331	50920331	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1317	115	1178	3	ENST00000440232.2:c.3097G>T	p.Glu1033Ter	p.E1033*	ENST00000440232	NM_002691.3	1033	Gag/Tag																																													NEWRECORD																																		
SHQ1	55164	MSKCC	GRCh37	3	72893542	72893543	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0020747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	51	978	2	ENST00000325599.8:c.175_176delinsTT	p.Gly59Leu	p.G59L	ENST00000325599	NM_018130.2	59	GGa/TTa																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70342675	70342675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	75	970	1	ENST00000374080.3:c.1436C>A	p.Ser479Tyr	p.S479Y	ENST00000374080		479	tCc/tAc																																													NEWRECORD																																		
XIAP	331	MSKCC	GRCh37	X	123020150	123020150	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1170	74	1198	1	ENST00000355640.3:c.638G>T	p.Cys213Phe	p.C213F	ENST00000355640		213	tGt/tTt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	116	891	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0020793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	153	981	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																													NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64136019	64136019	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199674030		P-0020793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	181	1148	2	ENST00000334205.4:c.1280G>A	p.Arg427His	p.R427H	ENST00000334205	NM_003942.2	427	cGc/cAc																																													NEWRECORD																																		
PAK1	5058	MSKCC	GRCh37	11	77047163	77047163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	74	937	0	ENST00000356341.3:c.1381G>A	p.Glu461Lys	p.E461K	ENST00000356341	NM_002576.4	461	Gag/Aag																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89350447	89350447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1464	108	1452	2	ENST00000301030.4:c.2503G>A	p.Asp835Asn	p.D835N	ENST00000301030	NM_001256183.1	835	Gac/Aac																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40944362	40944362	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0020793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	120	668	0	ENST00000373198.4:c.2139+1G>A		p.X713_splice	ENST00000373198	NM_133170.3	713																																														NEWRECORD																																		
HIST1H3C	8352	MSKCC	GRCh37	6	26045870	26045870	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	75	750	0	ENST00000540144.1:c.232G>C	p.Asp78His	p.D78H	ENST00000540144	NM_003531.2	78	Gac/Cac																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061459	38061459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006212-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			526	44	971	1	ENST00000250448.2:c.530C>T	p.Ser177Leu	p.S177L	ENST00000250448	NM_004496.3	177	tCg/tTg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	23	773	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	257	703	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
KMT2B	9757	MSKCC	GRCh37	19	36228980	36228980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	330	696	0	ENST00000222270.7:c.7760G>A	p.Arg2587Gln	p.R2587Q	ENST00000222270	NM_014727.1	2587	cGa/cAa																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110436695	110436695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	330	814	3	ENST00000375856.3:c.1706G>A	p.Arg569Gln	p.R569Q	ENST00000375856	NM_003749.2	569	cGa/cAa																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162731228	162731228	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	137	352	0	ENST00000367921.3:c.1083G>C	p.Glu361Asp	p.E361D	ENST00000367921	NM_006182.2	361	gaG/gaC																																													NEWRECORD																																		
CDC73	79577	MSKCC	GRCh37	1	193121509	193121509	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0020874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	95	349	0	ENST00000367435.3:c.908-1G>C		p.X303_splice	ENST00000367435	NM_024529.4	303																																														NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73349468	73349468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	183	672	1	ENST00000377767.4:c.868G>T	p.Asp290Tyr	p.D290Y	ENST00000377767	NM_014953.3	290	Gat/Tat																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42798872	42798872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	371	701	0	ENST00000575354.2:c.4444G>A	p.Gly1482Ser	p.G1482S	ENST00000575354	NM_015125.3	1482	Ggc/Agc																																													NEWRECORD																																		
HLA-A	3105	MSKCC	GRCh37	6	29912299	29912299	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1431	97	896	0	ENST00000376809.5:c.921del	p.Ile308SerfsTer14	p.I308Sfs*14	ENST00000376809	NM_002116.7	306	atC/at																																													NEWRECORD																																		
PRDM14	63978	MSKCC	GRCh37	8	70981855	70981855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	566	792	0	ENST00000276594.2:c.241G>A	p.Gly81Ser	p.G81S	ENST00000276594	NM_024504.3	81	Ggt/Agt																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1226494	1226494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	123	1036	7	ENST00000326873.7:c.1150C>T	p.Arg384Trp	p.R384W	ENST00000326873	NM_000455.4	384	Cgg/Tgg																																													NEWRECORD																																		
CYSLTR2	57105	MSKCC	GRCh37	13	49281660	49281660	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61735175		P-0020868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	178	1115	2	ENST00000282018.3:c.707C>T	p.Ser236Leu	p.S236L	ENST00000282018	NM_020377.2	236	tCg/tTg																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65332822	65332828	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCATC	CCGCATC	-			P-0020868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	71	519	0	ENST00000342505.4:c.711_717del	p.Met238Ter	p.M238*	ENST00000342505	NM_002227.2	237	agGATGCGG/ag																																													NEWRECORD																																		
HLA-B	3106	MSKCC	GRCh37	6	31323264	31323274	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCAGGTCAG	TGCCAGGTCAG	-			P-0020868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	53	393	0	ENST00000412585.2:c.715_725del	p.Leu239AlafsTer11	p.L239Afs*11	ENST00000412585	NM_005514.6	239	CTGACCTGGCAg/g																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151860737	151860753	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGCACCATGGGAAAG	GTGGCACCATGGGAAAG	-			P-0020868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	92	610	0	ENST00000262189.6:c.9909_9925del	p.Phe3304AlafsTer16	p.F3304Afs*16	ENST00000262189	NM_170606.2	3303	acCTTTCCCATGGTGCCACag/acag																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1293558	1293558	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	98	951	0	ENST00000310581.5:c.1443del	p.Arg481SerfsTer28	p.R481Sfs*28	ENST00000310581	NM_198253.2	481	agG/ag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	60	613	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120471712	120471712	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75423398		P-0020779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	46	487	0	ENST00000256646.2:c.3779G>A	p.Arg1260His	p.R1260H	ENST00000256646	NM_024408.3	1260	cGt/cAt																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120458813	120458813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	61	627	0	ENST00000256646.2:c.6532G>T	p.Ala2178Ser	p.A2178S	ENST00000256646	NM_024408.3	2178	Gcc/Tcc																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18499723	18499723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	60	476	0	ENST00000266497.5:c.1578C>A	p.Ser526Arg	p.S526R	ENST00000266497		526	agC/agA																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49426411	49426411	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	97	1010	0	ENST00000301067.7:c.12077A>G	p.Gln4026Arg	p.Q4026R	ENST00000301067	NM_003482.3	4026	cAa/cGa																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49445379	49445379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	104	974	1	ENST00000301067.7:c.2087C>T	p.Ser696Phe	p.S696F	ENST00000301067	NM_003482.3	696	tCc/tTc																																													NEWRECORD																																		
EPCAM	4072	MSKCC	GRCh37	2	47602389	47602389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	55	450	0	ENST00000263735.4:c.442C>G	p.Leu148Val	p.L148V	ENST00000263735	NM_002354.2	148	Cta/Gta																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187629316	187629316	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	86	695	0	ENST00000441802.2:c.1666A>G	p.Thr556Ala	p.T556A	ENST00000441802	NM_005245.3	556	Aca/Gca																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1260708	1260708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	62	530	1	ENST00000310581.5:c.2851C>T	p.Arg951Trp	p.R951W	ENST00000310581	NM_198253.2	951	Cgg/Tgg																																													NEWRECORD																																		
HIST1H2BD	3017	MSKCC	GRCh37	6	26158743	26158743	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	116	616	0	ENST00000289316.2:c.346A>G	p.Thr116Ala	p.T116A	ENST00000289316	NM_138720.2	116	Acc/Gcc																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8317891	8317891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	55	467	0	ENST00000356435.5:c.5722G>T	p.Asp1908Tyr	p.D1908Y	ENST00000356435		1908	Gac/Tac																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47039350	47039369	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCTGTCCTCCTCCAACGT	GTGCTGTCCTCCTCCAACGT	-			P-0020779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	52	379	0	ENST00000329236.7:c.743_762del	p.Val248AlafsTer48	p.V248Afs*48	ENST00000329236	NM_001204466.1	248	GTGCTGTCCTCCTCCAACGTg/g																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	120	640	3	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0020739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	218	956	5	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	161	415	3	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																													NEWRECORD																																		
AKT3	10000	MSKCC	GRCh37	1	243800978	243800978	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	199	978	5	ENST00000263826.5:c.496C>T	p.Arg166Ter	p.R166*	ENST00000263826	NM_005465.4	166	Cga/Tga																																													NEWRECORD																																		
IGF2	3481	MSKCC	GRCh37	11	2154748	2154748	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	193	877	6	ENST00000434045.2:c.473C>T	p.Pro158Leu	p.P158L	ENST00000434045	NM_001127598.1	158	cCg/cTg																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106508176	106508176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	188	342	3	ENST00000359195.3:c.170C>T	p.Ala57Val	p.A57V	ENST00000359195	NM_002649.2	57	gCg/gTg																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32188244	32188244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	207	1155	7	ENST00000375023.3:c.1097C>T	p.Pro366Leu	p.P366L	ENST00000375023	NM_004557.3	366	cCg/cTg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782329		P-0020696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	369	1086	0	ENST00000269305.4:c.746G>C	p.Arg249Thr	p.R249T	ENST00000269305	NM_001126112.2	249	aGg/aCg																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2958127	2958127	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	80	1207	0	ENST00000396946.4:c.2605C>T	p.Arg869Trp	p.R869W	ENST00000396946	NM_032415.4	869	Cgg/Tgg																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156834565	156834565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	134	1327	0	ENST00000524377.1:c.333C>A	p.Phe111Leu	p.F111L	ENST00000524377	NM_002529.3	111	ttC/ttA																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48955439	48955602	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATGTGCTTAATTTAAAAGCCTTTGATTTTTACAAAGTGATCGAAAGTTTTATCAAAGCAGAAGGCAACTTGACAAGAGAAATGATAAAACATTTAGAACGATGTGAACATCGAATCATGGAATCCCTTGCATGGCTCTCAGTAAGTAGCTAAATAATTGAAGA	AATGTGCTTAATTTAAAAGCCTTTGATTTTTACAAAGTGATCGAAAGTTTTATCAAAGCAGAAGGCAACTTGACAAGAGAAATGATAAAACATTTAGAACGATGTGAACATCGAATCATGGAATCCCTTGCATGGCTCTCAGTAAGTAGCTAAATAATTGAAGA	-			P-0020696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	42	634	1	ENST00000267163.4:c.1558_1695+26del		p.X520_splice	ENST00000267163	NM_000321.2	520																																														NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98231085	98231085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	68	762	0	ENST00000331920.6:c.2198C>T	p.Ser733Leu	p.S733L	ENST00000331920	NM_000264.3	733	tCa/tTa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	199	988	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0020863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	196	882	3	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67473756	67473756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	69	944	1	ENST00000327367.4:c.836G>A	p.Arg279Lys	p.R279K	ENST00000327367	NM_005902.3	279	aGg/aAg																																													NEWRECORD																																		
CSF3R	1441	MSKCC	GRCh37	1	36935384	36935384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	223	993	1	ENST00000361632.4:c.1343G>A	p.Gly448Asp	p.G448D	ENST00000361632		448	gGc/gAc																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48581290	48581296	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTCTG	AGCTCTG	-			P-0020863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	418	901	0	ENST00000342988.3:c.594_600del	p.Ala199Ter	p.A199*	ENST00000342988	NM_005359.5	198	ccAGCTCTG/cc																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36164887	36164888	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGCT			P-0020863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	258	1052	0	ENST00000300305.3:c.984_987dup	p.Phe330SerfsTer271	p.F330Sfs*271	ENST00000300305		329	-/AGCG																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108164163	108164164	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	236	454	1	ENST00000278616.4:c.4741dupA	p.Ile1581AsnfsTer5	p.I1581Nfs*5	ENST00000278616	NM_000051.3	1579	caa/cAaa																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145742852	145742853	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	927	521	0	ENST00000428558.2:c.158dup	p.Gln54ProfsTer83	p.Q54Pfs*83	ENST00000428558	NM_004260.3	53	ggc/ggGc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173345	112173345	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	90	616	0	ENST00000257430.4:c.2054G>A	p.Trp685Ter	p.W685*	ENST00000257430	NM_000038.5	685	tGg/tAg																																													NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0020838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	342	789	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	102	428	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0020838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	691	1517	0	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142217614	142217614	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0020838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	94	852	0	ENST00000350721.4:c.5383G>T	p.Gly1795Ter	p.G1795*	ENST00000350721	NM_001184.3	1795	Gga/Tga																																													NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189585691	189585691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	280	1004	0	ENST00000264731.3:c.952C>T	p.Arg318Cys	p.R318C	ENST00000264731	NM_003722.4	318	Cgc/Tgc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	121	1022	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0020867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	971	1047	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	58	500	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55144564	55144564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	49	376	1	ENST00000257290.5:c.2038G>A	p.Gly680Arg	p.G680R	ENST00000257290	NM_006206.4	680	Gga/Aga																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105820	27105820	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	52	387	1	ENST00000324856.7:c.5431A>T	p.Lys1811Ter	p.K1811*	ENST00000324856	NM_006015.4	1811	Aag/Tag																																													NEWRECORD																																		
CDC73	79577	MSKCC	GRCh37	1	193205420	193205420	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	64	382	0	ENST00000367435.3:c.1351G>C	p.Ala451Pro	p.A451P	ENST00000367435	NM_024529.4	451	Gca/Cca																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57864847	57864847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	40	540	2	ENST00000228682.2:c.2324C>T	p.Pro775Leu	p.P775L	ENST00000228682	NM_005269.2	775	cCc/cTc																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3832775	3832775	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	48	401	0	ENST00000262367.5:c.1483C>T	p.Gln495Ter	p.Q495*	ENST00000262367	NM_004380.2	495	Cag/Tag																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1220623	1220624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	58	589	0	ENST00000326873.7:c.644dup	p.Ser216LeufsTer50	p.S216Lfs*50	ENST00000326873	NM_000455.4	214	cag/caGg																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10602864	10602864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	89	686	0	ENST00000171111.5:c.714C>G	p.Asn238Lys	p.N238K	ENST00000171111	NM_203500.1	238	aaC/aaG																																													NEWRECORD																																		
CXCR4	7852	MSKCC	GRCh37	2	136872901	136872901	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	54	282	0	ENST00000241393.3:c.597C>G	p.Phe199Leu	p.F199L	ENST00000241393	NM_003467.2	199	ttC/ttG																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142215882	142215882	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	58	302	0	ENST00000350721.4:c.5711G>C	p.Arg1904Pro	p.R1904P	ENST00000350721	NM_001184.3	1904	cGg/cCg																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187527319	187527319	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	71	388	0	ENST00000441802.2:c.10255C>G	p.Pro3419Ala	p.P3419A	ENST00000441802	NM_005245.3	3419	Ccc/Gcc																																													NEWRECORD																																		
ETV1	2115	MSKCC	GRCh37	7	13978840	13978840	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	36	420	0	ENST00000405192.2:c.267G>C	p.Lys89Asn	p.K89N	ENST00000405192	NM_001163147.1	89	aaG/aaC																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47039709	47039709	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	57	548	0	ENST00000329236.7:c.926+1G>T		p.X309_splice	ENST00000329236	NM_001204466.1	309																																														NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0020750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	190	865	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180053194	180053194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	175	860	3	ENST00000261937.6:c.1175C>A	p.Ala392Asp	p.A392D	ENST00000261937	NM_182925.4	392	gCc/gAc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	66	483	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	12028619	12028619	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	87	508	0	ENST00000353533.5:c.822A>T	p.Arg274Ser	p.R274S	ENST00000353533	NM_003010.3	274	agA/agT																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16040728	16040728	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0020749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	48	460	0	ENST00000268712.3:c.1408-2A>G		p.X470_splice	ENST00000268712	NM_006311.3	470																																														NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	318	952	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32893408	32893408	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	149	704	0	ENST00000380152.3:c.262C>G	p.Leu88Val	p.L88V	ENST00000380152		88	Ctg/Gtg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579592	7579602	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TGTAGATGGGT	TGTAGATGGGT	-			P-0020828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	141	832	1	ENST00000269305.4:c.97-12_97-2del		p.X33_splice	ENST00000269305	NM_001126112.2	33																																														NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29483000	29483000	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0020828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	167	511	0	ENST00000358273.4:c.61-1G>A		p.X21_splice	ENST00000358273	NM_001042492.2	21																																														NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1220418	1220419	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCATTGTGCACAAGGACATCAAGCC			P-0020828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	158	1283	0	ENST00000326873.7:c.513_537dup	p.Gly180HisfsTer94	p.G180Hfs*94	ENST00000326873	NM_000455.4	171	ggc/gGCATTGTGCACAAGGACATCAAGCCgc																																													NEWRECORD																																		
KMT2B	9757	MSKCC	GRCh37	19	36211139	36211139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776148419		P-0020828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1329	217	1507	3	ENST00000222270.7:c.890G>A	p.Arg297Gln	p.R297Q	ENST00000222270	NM_014727.1	297	cGa/cAa																																													NEWRECORD																																		
KIT	3815	MSKCC	GRCh37	4	55564570	55564570	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	246	892	1	ENST00000288135.5:c.458G>T	p.Gly153Val	p.G153V	ENST00000288135	NM_000222.2	153	gGg/gTg																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76912110	76912110	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	64	962	1	ENST00000373344.5:c.4154A>T	p.Gln1385Leu	p.Q1385L	ENST00000373344	NM_000489.3	1385	cAg/cTg																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	38	704	0	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	59	550	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	76	701	5	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	111	968	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	62	917	3	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	72	1012	5	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	61	824	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	111	768	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112177864	112177864	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	20	513	0	ENST00000257430.4:c.6579del	p.Val2194PhefsTer5	p.V2194Ffs*5	ENST00000257430	NM_000038.5	2191	ggA/gg																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149497299	149497299	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142762235		P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	99	1080	4	ENST00000261799.4:c.3019G>A	p.Val1007Ile	p.V1007I	ENST00000261799	NM_002609.3	1007	Gtc/Atc																																													NEWRECORD																																		
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	74	1199	9	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																													NEWRECORD																																		
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	106	1393	3	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	90	1158	4	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																													NEWRECORD																																		
KMT2B	9757	MSKCC	GRCh37	19	36208923	36208925	+	start_lost,inframe_deletion	Translation_Start_Site	DEL	GGC	GGC	-			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	10	61	0	ENST00000222270.7:c.14_16del	p.Ala5del	p.A5del	ENST00000222270	NM_014727.1	1	atGGCg/atg																																													NEWRECORD																																		
HLA-B	3106	MSKCC	GRCh37	6	31323362	31323363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	76	923	2	ENST00000412585.2:c.626dupC	p.Thr211AspfsTer10	p.T211Dfs*10	ENST00000412585	NM_005514.6	209	cca/ccCa																																													NEWRECORD																																		
CDC73	79577	MSKCC	GRCh37	1	193205439	193205439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	66	786	0	ENST00000367435.3:c.1370G>T	p.Trp457Leu	p.W457L	ENST00000367435	NM_024529.4	457	tGg/tTg																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49418397	49418397	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	111	938	0	ENST00000301067.7:c.16016C>A	p.Ala5339Asp	p.A5339D	ENST00000301067	NM_003482.3	5339	gCc/gAc																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49437711	49437713	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	91	1223	0	ENST00000301067.7:c.5257_5259del	p.Lys1753del	p.K1753del	ENST00000301067	NM_003482.3	1753	AAG/-																																													NEWRECORD																																		
PTPN11	5781	MSKCC	GRCh37	12	112910844	112910844	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	48	1058	0	ENST00000351677.2:c.853T>G	p.Phe285Val	p.F285V	ENST00000351677	NM_002834.3	285	Ttt/Gtt																																													NEWRECORD																																		
MAP2K1	5604	MSKCC	GRCh37	15	66729108	66729108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	58	1092	3	ENST00000307102.5:c.316G>A	p.Ala106Thr	p.A106T	ENST00000307102	NM_002755.3	106	Gca/Aca																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9857386	9857386	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	27	712	0	ENST00000330684.3:c.4015A>G	p.Lys1339Glu	p.K1339E	ENST00000330684	NM_001134407.1	1339	Aaa/Gaa																																													NEWRECORD																																		
RARA	5914	MSKCC	GRCh37	17	38508664	38508664	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	90	1253	0	ENST00000254066.5:c.712A>G	p.Lys238Glu	p.K238E	ENST00000254066	NM_000964.3	238	Aag/Gag																																													NEWRECORD																																		
SPOP	8405	MSKCC	GRCh37	17	47696345	47696345	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	49	627	1	ENST00000347630.2:c.478G>A	p.Glu160Lys	p.E160K	ENST00000347630	NM_001007230.1	160	Gag/Aag																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59878611	59878612	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	22	500	0	ENST00000259008.2:c.1140+2_1140+3del		p.X380_splice	ENST00000259008	NM_032043.2	380																																														NEWRECORD																																		
KMT2B	9757	MSKCC	GRCh37	19	36212113	36212113	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	53	833	0	ENST00000222270.7:c.1868del	p.Pro623GlnfsTer37	p.P623Qfs*37	ENST00000222270	NM_014727.1	622	Ccc/cc																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42794104	42794104	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	40	570	0	ENST00000575354.2:c.1464+1G>A		p.X488_splice	ENST00000575354	NM_015125.3	488																																														NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242794123	242794123	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	75	1161	1	ENST00000334409.5:c.605C>A	p.Ala202Asp	p.A202D	ENST00000334409	NM_005018.2	202	gCc/gAc																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32169955	32169956	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	63	1178	0	ENST00000375023.3:c.3652dup	p.Ser1218PhefsTer17	p.S1218Ffs*17	ENST00000375023	NM_004557.3	1218	tct/tTct																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	93967930	93967931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	25	891	0	ENST00000369303.4:c.1996dup	p.Thr666AsnfsTer17	p.T666Nfs*17	ENST00000369303	NM_004440.3	666	acc/aAcc																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151896493	151896493	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	30	756	0	ENST00000262189.6:c.4144A>G	p.Ser1382Gly	p.S1382G	ENST00000262189	NM_170606.2	1382	Agt/Ggt																																													NEWRECORD																																		
PREX2	80243	MSKCC	GRCh37	8	69046453	69046453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	56	939	0	ENST00000288368.4:c.3926A>G	p.Asp1309Gly	p.D1309G	ENST00000288368	NM_024870.2	1309	gAc/gGc																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145742149	145742149	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	69	745	0	ENST00000428558.2:c.355-1G>T		p.X119_splice	ENST00000428558	NM_004260.3	119																																														NEWRECORD																																		
KLF4	9314	MSKCC	GRCh37	9	110249911	110249911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	85	802	2	ENST00000374672.4:c.764C>A	p.Pro255His	p.P255H	ENST00000374672	NM_004235.4	255	cCt/cAt																																													NEWRECORD																																		
RXRA	6256	MSKCC	GRCh37	9	137300130	137300130	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140464195		P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	52	1035	0	ENST00000481739.1:c.415G>A	p.Gly139Arg	p.G139R	ENST00000481739	NM_002957.4	139	Ggg/Agg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0020866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	30	452	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																													NEWRECORD																																		
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0020866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	218	682	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																													NEWRECORD																																		
RRAS2	22800	MSKCC	GRCh37	11	14380350	14380350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	113	394	0	ENST00000256196.4:c.67G>A	p.Gly23Ser	p.G23S	ENST00000256196		23	Ggc/Agc																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103506714	103506714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	98	347	1	ENST00000355739.4:c.457G>A	p.Glu153Lys	p.E153K	ENST00000355739	NM_000123.3	153	Gaa/Aaa																																													NEWRECORD																																		
PREX2	80243	MSKCC	GRCh37	8	69009347	69009347	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs190776975		P-0020866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	254	685	0	ENST00000288368.4:c.2464G>A	p.Val822Met	p.V822M	ENST00000288368	NM_024870.2	822	Gtg/Atg																																													NEWRECORD																																		
MYOD1	4654	MSKCC	GRCh37	11	17742945	17742945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	30	744	4	ENST00000250003.3:c.853G>T	p.Ala285Ser	p.A285S	ENST00000250003	NM_002478.4	285	Gct/Tct																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115120647	115120647	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	205	1131	1	ENST00000257566.3:c.359G>T	p.Gly120Val	p.G120V	ENST00000257566	NM_016569.3	120	gGc/gTc																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103515106	103515106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	34	497	0	ENST00000355739.4:c.1607A>G	p.Asn536Ser	p.N536S	ENST00000355739	NM_000123.3	536	aAt/aGt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0020883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	215	887	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29684285	29684285	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0020883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	161	654	0	ENST00000358273.4:c.7870-2A>T		p.X2624_splice	ENST00000358273	NM_001042492.2	2624																																														NEWRECORD																																		
PIK3C3	5289	MSKCC	GRCh37	18	39576684	39576684	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	64	597	0	ENST00000262039.4:c.974A>T	p.Asn325Ile	p.N325I	ENST00000262039	NM_002647.2	325	aAt/aTt																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40790086	40790086	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	63	750	0	ENST00000373198.4:c.2645A>G	p.Asp882Gly	p.D882G	ENST00000373198	NM_133170.3	882	gAc/gGc																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47039904	47039904	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0020883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	138	479	0	ENST00000329236.7:c.1013A>T	p.Gln338Leu	p.Q338L	ENST00000329236	NM_001204466.1	338	cAg/cTg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0020782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	187	821	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198267360	198267360	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	160	740	0	ENST00000335508.6:c.1997A>T	p.Lys666Met	p.K666M	ENST00000335508	NM_012433.2	666	aAg/aTg																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28964202	28964202	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	90	453	0	ENST00000282397.4:c.1700C>A	p.Pro567Gln	p.P567Q	ENST00000282397	NM_002019.4	567	cCg/cAg																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7163193	7163193	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	147	750	2	ENST00000302850.5:c.1879G>T	p.Asp627Tyr	p.D627Y	ENST00000302850	NM_000208.2	627	Gat/Tat																																													NEWRECORD																																		
U2AF1	7307	MSKCC	GRCh37	21	44524474	44524474	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	91	399	0	ENST00000291552.4:c.83G>C	p.Arg28Pro	p.R28P	ENST00000291552	NM_006758.2	28	cGt/cCt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	261	865	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11145656	11145656	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	206	866	0	ENST00000344626.4:c.4018G>T	p.Glu1340Ter	p.E1340*	ENST00000344626	NM_003072.3	1340	Gag/Tag																																													NEWRECORD																																		
CTLA4	1493	MSKCC	GRCh37	2	204732726	204732726	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	96	611	0	ENST00000302823.3:c.63del	p.Cys22AlafsTer50	p.C22Afs*50	ENST00000302823	NM_005214.4	21	Ccc/cc																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71021815	71021815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	91	332	0	ENST00000318789.4:c.1543C>T	p.His515Tyr	p.H515Y	ENST00000318789	NM_032682.5	515	Cat/Tat																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8465645	8465645	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	142	678	0	ENST00000356435.5:c.3535A>G	p.Ser1179Gly	p.S1179G	ENST00000356435		1179	Agc/Ggc																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39930306	39930306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	52	997	0	ENST00000378444.4:c.3158G>A	p.Arg1053Lys	p.R1053K	ENST00000378444	NM_001123385.1	1053	aGg/aAg																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44911039	44911039	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	38	640	0	ENST00000377967.4:c.740A>T	p.Gln247Leu	p.Q247L	ENST00000377967	NM_021140.2	247	cAa/cTa																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99465606	99465606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	101	820	0	ENST00000268035.6:c.2431G>A	p.Glu811Lys	p.E811K	ENST00000268035	NM_000875.3	811	Gag/Aag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0020803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	181	890	2	ENST00000269305.4:c.97-1G>T		p.X33_splice	ENST00000269305	NM_001126112.2	33																																														NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114911491	114911491	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	88	277	0	ENST00000543371.1:c.1009C>G	p.Gln337Glu	p.Q337E	ENST00000543371	NM_001198531.1	337	Cag/Gag																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99192826	99192826	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199652097		P-0020803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	48	793	0	ENST00000268035.6:c.16G>A	p.Gly6Arg	p.G6R	ENST00000268035	NM_000875.3	6	Gga/Aga																																													NEWRECORD																																		
FOXL2	668	MSKCC	GRCh37	3	138665346	138665346	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1272	197	1513	0	ENST00000330315.3:c.219G>C	p.Lys73Asn	p.K73N	ENST00000330315	NM_023067.3	73	aaG/aaC																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86681121	86681121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	86	548	0	ENST00000274376.6:c.2762C>T	p.Ser921Phe	p.S921F	ENST00000274376	NM_002890.2	921	tCt/tTt																																													NEWRECORD																																		
E2F3	1871	MSKCC	GRCh37	6	20481452	20481452	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	51	487	0	ENST00000346618.3:c.521C>G	p.Ser174Ter	p.S174*	ENST00000346618	NM_001949.4	174	tCa/tGa																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242466	55242481	+	protein_altering_variant	In_Frame_Del	DEL	GAATTAAGAGAAGCAA	GAATTAAGAGAAGCAA	ATTC			P-0020803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	119	876	3	ENST00000275493.2:c.2236_2251delinsATTC	p.Glu746_Thr751delinsIlePro	p.E746_T751delinsIP	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCAAca/ATTCca																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151842267	151842267	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	64	669	0	ENST00000262189.6:c.14145G>C	p.Met4715Ile	p.M4715I	ENST00000262189	NM_170606.2	4715	atG/atC																																													NEWRECORD																																		
XRCC2	7516	MSKCC	GRCh37	7	152357789	152357789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	210	828	2	ENST00000359321.1:c.118C>T	p.His40Tyr	p.H40Y	ENST00000359321	NM_005431.1	40	Cat/Tat																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70352389	70352389	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0020803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	146	616	0	ENST00000374080.3:c.4415+1G>C		p.X1472_splice	ENST00000374080		1472																																														NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913389		P-0020820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	562	774	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	700	1213	2	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0020820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	426	892	1	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782144		P-0020820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	608	1106	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10602763	10602763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	761	1209	4	ENST00000171111.5:c.815G>A	p.Arg272His	p.R272H	ENST00000171111	NM_203500.1	272	cGc/cAc																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27097782	27097782	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	408	630	0	ENST00000324856.7:c.3371A>T	p.Lys1124Met	p.K1124M	ENST00000324856	NM_006015.4	1124	aAg/aTg																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120460387	120460387	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0020820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	251	639	1	ENST00000256646.2:c.5930-2A>T		p.X1977_splice	ENST00000256646	NM_024408.3	1977																																														NEWRECORD																																		
PGR	5241	MSKCC	GRCh37	11	100999347	100999347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	577	1178	3	ENST00000325455.5:c.455C>A	p.Pro152Gln	p.P152Q	ENST00000325455	NM_001202474.3	152	cCg/cAg																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18499689	18499689	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	199	855	0	ENST00000266497.5:c.1544C>G	p.Ser515Cys	p.S515C	ENST00000266497		515	tCc/tGc																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49434067	49434067	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	386	727	0	ENST00000301067.7:c.7486G>T	p.Ala2496Ser	p.A2496S	ENST00000301067	NM_003482.3	2496	Gca/Tca																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49446430	49446430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	449	834	0	ENST00000301067.7:c.1175G>T	p.Cys392Phe	p.C392F	ENST00000301067	NM_003482.3	392	tGc/tTc																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67479833	67479833	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	236	689	2	ENST00000327367.4:c.1140G>T	p.Trp380Cys	p.W380C	ENST00000327367	NM_005902.3	380	tgG/tgT																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212251761	212251761	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	270	476	0	ENST00000342788.4:c.3298G>T	p.Glu1100Ter	p.E1100*	ENST00000342788	NM_005235.2	1100	Gag/Tag																																													NEWRECORD																																		
PHOX2B	8929	MSKCC	GRCh37	4	41750473	41750473	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	182	720	0	ENST00000226382.2:c.155G>C	p.Gly52Ala	p.G52A	ENST00000226382	NM_003924.3	52	gGg/gCg																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47038562	47038562	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0020820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	564	928	0	ENST00000329236.7:c.493G>T	p.Glu165Ter	p.E165*	ENST00000329236	NM_001204466.1	165	Gag/Tag																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76938611	76938611	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	274	888	1	ENST00000373344.5:c.2137C>A	p.Pro713Thr	p.P713T	ENST00000373344	NM_000489.3	713	Cct/Act																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123200032	123200032	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	108	438	0	ENST00000218089.9:c.2104G>C	p.Asp702His	p.D702H	ENST00000218089	NM_001042749.1	702	Gac/Cac																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	259	1028	0	ENST00000269305.4:c.808T>G	p.Phe270Val	p.F270V	ENST00000269305	NM_001126112.2	270	Ttt/Gtt																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81916891	81916891	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	138	1095	0	ENST00000359376.3:c.710A>T	p.Asp237Val	p.D237V	ENST00000359376	NM_002661.3	237	gAt/gTt																																													NEWRECORD																																		
ERF	2077	MSKCC	GRCh37	19	42753719	42753719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	166	1212	2	ENST00000222329.4:c.545G>T	p.Gly182Val	p.G182V	ENST00000222329	NM_006494.2	182	gGc/gTc																																													NEWRECORD																																		
PPP4R2	151987	MSKCC	GRCh37	3	73114747	73114747	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	52	370	0	ENST00000356692.5:c.1128C>G	p.Asp376Glu	p.D376E	ENST00000356692		376	gaC/gaG																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	272	737	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0020827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	226	452	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202149808	202149808	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	267	739	1	ENST00000358485.4:c.1249C>T	p.Gln417Ter	p.Q417*	ENST00000358485	NM_001080125.1	417	Cag/Tag																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44910953	44910953	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0020827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	204	223	0	ENST00000377967.4:c.655-1G>A		p.X219_splice	ENST00000377967	NM_021140.2	219																																														NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971048	21971058	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCGCCCCG	GCCGCGCCCCG	-			P-0020827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	353	590	0	ENST00000304494.5:c.300_310delCGGGGCGCGGC	p.Ala102ArgfsTer14	p.A102Rfs*14	ENST00000304494	NM_000077.4	100	gcCGGGGCGCGGCtg/gctg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs878854073		P-0020827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	304	677	1	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																														NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133738172	133738172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	183	566	0	ENST00000318560.5:c.572G>A	p.Arg191His	p.R191H	ENST00000318560	NM_005157.4	191	cGc/cAc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	260	944	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	106	324	1	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0020826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	346	972	0	ENST00000269305.4:c.672G>C	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaC																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	12032594	12032594	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	203	732	0	ENST00000353533.5:c.1030G>T	p.Val344Phe	p.V344F	ENST00000353533	NM_003010.3	344	Gtc/Ttc																																													NEWRECORD																																		
XIAP	331	MSKCC	GRCh37	X	123019657	123019657	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	135	902	0	ENST00000355640.3:c.145C>T	p.Arg49Ter	p.R49*	ENST00000355640		49	Cga/Tga																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0020825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1094	370	709	3	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0020825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	264	716	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8404576	8404576	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146844299		P-0020825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	149	384	0	ENST00000356435.5:c.4171G>A	p.Ala1391Thr	p.A1391T	ENST00000356435		1391	Gca/Aca																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89653780	89653781	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0020825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	95	435	0	ENST00000371953.3:c.80-1_80del		p.X27_splice	ENST00000371953	NM_000314.4	27																																														NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88679790	88679790	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	299	728	0	ENST00000360948.2:c.673G>T	p.Asp225Tyr	p.D225Y	ENST00000360948	NM_001012338.2	225	Gac/Tac																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112154966	112154970	+	frameshift_variant	Frame_Shift_Del	DEL	ATACG	ATACG	C			P-0020825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	299	753	0	ENST00000257430.4:c.1237_1241delinsC	p.Ile413ProfsTer40	p.I413Pfs*40	ENST00000257430	NM_000038.5	413	ATACGc/Cc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0020810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	27	1039	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30672827	30672827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	21	1338	0	ENST00000376406.3:c.4133C>T	p.Ser1378Phe	p.S1378F	ENST00000376406	NM_014641.2	1378	tCc/tTc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	356	969	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0020762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	425	814	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32910683	32910683	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	170	757	0	ENST00000380152.3:c.2191G>T	p.Glu731Ter	p.E731*	ENST00000380152		731	Gaa/Taa																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95562569	95562569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	266	485	0	ENST00000343455.3:c.4688T>C	p.Val1563Ala	p.V1563A	ENST00000343455	NM_177438.2	1563	gTg/gCg																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151879112	151879113	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	ATTTGCTGTTGTCTCATTCATTTGAAGGGGCC			P-0020762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	267	859	0	ENST00000262189.6:c.5801_5832dup	p.Arg1945GlyfsTer5	p.R1945Gfs*5	ENST00000262189	NM_170606.2	1944	-/GGCCCCTTCAAATGAATGAGACAACAGCAAAT																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	8	435	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	1004	877	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11264742	11264742	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	428	968	0	ENST00000361445.4:c.3820A>G	p.Arg1274Gly	p.R1274G	ENST00000361445	NM_004958.3	1274	Agg/Ggg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023576	27023576	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	225	451	0	ENST00000324856.7:c.682G>T	p.Ala228Ser	p.A228S	ENST00000324856	NM_006015.4	228	Gcc/Tcc																																													NEWRECORD																																		
CYLD	1540	MSKCC	GRCh37	16	50783685	50783685	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	397	856	0	ENST00000398568.2:c.76C>T	p.Gln26Ter	p.Q26*	ENST00000398568	NM_001042412.1	26	Caa/Taa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0020721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	376	759	0	ENST00000269305.4:c.560-2A>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																														NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1221260	1221260	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	808	943	2	ENST00000326873.7:c.783C>A	p.Tyr261Ter	p.Y261*	ENST00000326873	NM_000455.4	261	taC/taA																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212530092	212530092	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	300	570	0	ENST00000342788.4:c.1827T>A	p.Asp609Glu	p.D609E	ENST00000342788	NM_005235.2	609	gaT/gaA																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56177630	56177630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	315	565	1	ENST00000399503.3:c.2603C>T	p.Ala868Val	p.A868V	ENST00000399503	NM_005921.1	868	gCc/gTc																																													NEWRECORD																																		
TAP1	6890	MSKCC	GRCh37	6	32816571	32816571	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0020721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	491	1053	0	ENST00000354258.4:c.1604C>G	p.Ser535Ter	p.S535*	ENST00000354258	NM_000593.5	535	tCa/tGa																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81381507	81381507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	144	628	0	ENST00000222390.5:c.554G>A	p.Gly185Glu	p.G185E	ENST00000222390	NM_000601.4	185	gGg/gAg																																													NEWRECORD																																		
TEK	7010	MSKCC	GRCh37	9	27202954	27202954	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs112475919		P-0020721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	165	811	1	ENST00000380036.4:c.2046C>A	p.Asp682Glu	p.D682E	ENST00000380036	NM_000459.3	682	gaC/gaA																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11188513	11188513	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	89	561	3	ENST00000361445.4:c.5908del	p.Gln1970ArgfsTer7	p.Q1970Rfs*7	ENST00000361445	NM_004958.3	1970	Cag/ag																																													NEWRECORD																																		
MCL1	4170	MSKCC	GRCh37	1	150551952	150551952	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	243	914	3	ENST00000369026.2:c.55delG	p.Ala19ProfsTer30	p.A19Pfs*30	ENST00000369026	NM_021960.4	19	Gcc/cc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8097739	8097739	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	259	996	0	ENST00000346208.3:c.121T>C	p.Tyr41His	p.Y41H	ENST00000346208		41	Tac/Cac																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	166	757	3	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70446284	70446284	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	203	784	0	ENST00000373644.4:c.5230del	p.Arg1744GlufsTer18	p.R1744Efs*18	ENST00000373644	NM_030625.2	1742	Aaa/aa																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	137	866	2	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	73	503	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114903745	114903745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	234	870	0	ENST00000543371.1:c.749T>C	p.Val250Ala	p.V250A	ENST00000543371	NM_001198531.1	250	gTa/gCa																																													NEWRECORD																																		
FGFR2	2263	MSKCC	GRCh37	10	123276964	123276964	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	86	426	0	ENST00000358487.5:c.953A>G	p.Asn318Ser	p.N318S	ENST00000358487	NM_000141.4	318	aAc/aGc																																													NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	221	981	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																													NEWRECORD																																		
BIRC3	330	MSKCC	GRCh37	11	102201783	102201783	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	120	654	0	ENST00000263464.3:c.1135A>G	p.Thr379Ala	p.T379A	ENST00000263464	NM_001165.4	379	Act/Gct																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108124653	108124653	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	122	802	0	ENST00000278616.4:c.2011A>G	p.Ile671Val	p.I671V	ENST00000278616	NM_000051.3	671	Ata/Gta																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	498235	498235	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	86	325	1	ENST00000399788.2:c.23del	p.Gly8AlafsTer58	p.G8Afs*58	ENST00000399788	NM_001042603.1	8	gGc/gc																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18649063	18649063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	81	663	3	ENST00000266497.5:c.2738G>A	p.Gly913Asp	p.G913D	ENST00000266497		913	gGc/gAc																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49425056	49425056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1213	315	1306	2	ENST00000301067.7:c.13432C>T	p.Arg4478Trp	p.R4478W	ENST00000301067	NM_003482.3	4478	Cgg/Tgg																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49427275	49427275	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	171	823	0	ENST00000301067.7:c.11213A>C	p.Gln3738Pro	p.Q3738P	ENST00000301067	NM_003482.3	3738	cAg/cCg																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49448480	49448480	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	209	841	0	ENST00000301067.7:c.231del	p.His77GlnfsTer53	p.H77Qfs*53	ENST00000301067	NM_003482.3	77	caC/ca																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57861886	57861886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	218	797	2	ENST00000228682.2:c.1187G>A	p.Arg396Gln	p.R396Q	ENST00000228682	NM_005269.2	396	cGg/cAg																																													NEWRECORD																																		
SH2B3	10019	MSKCC	GRCh37	12	111885554	111885554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	288	1231	2	ENST00000341259.2:c.1331C>T	p.Ser444Leu	p.S444L	ENST00000341259	NM_005475.2	444	tCg/tTg																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133240628	133240628	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	225	808	0	ENST00000320574.5:c.2668A>G	p.Ile890Val	p.I890V	ENST00000320574	NM_006231.2	890	Atc/Gtc																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32953616	32953616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	82	657	0	ENST00000380152.3:c.8917C>T	p.Arg2973Cys	p.R2973C	ENST00000380152		2973	Cgt/Tgt																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48919327	48919327	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	48	341	0	ENST00000267163.4:c.492A>T	p.Lys164Asn	p.K164N	ENST00000267163	NM_000321.2	164	aaA/aaT																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110434598	110434598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	364	1266	0	ENST00000375856.3:c.3803C>T	p.Pro1268Leu	p.P1268L	ENST00000375856	NM_003749.2	1268	cCg/cTg																																													NEWRECORD																																		
PRKD1	5587	MSKCC	GRCh37	14	30093360	30093360	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	130	754	0	ENST00000331968.5:c.1903C>T	p.Gln635Ter	p.Q635*	ENST00000331968	NM_002742.2	635	Cag/Tag																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95571499	95571499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	167	612	0	ENST00000343455.3:c.3178C>T	p.Arg1060Cys	p.R1060C	ENST00000343455	NM_177438.2	1060	Cgc/Tgc																																													NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105242084	105242084	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1141	316	1264	0	ENST00000349310.3:c.340G>C	p.Glu114Gln	p.E114Q	ENST00000349310	NM_001014432.1	114	Gag/Cag																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42028724	42028724	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	170	831	0	ENST00000219905.7:c.4262T>A	p.Leu1421Ter	p.L1421*	ENST00000219905	NM_001164273.1	1421	tTg/tAg																																													NEWRECORD																																		
TP53BP1	7158	MSKCC	GRCh37	15	43700287	43700287	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	178	915	0	ENST00000382044.4:c.5601-1G>A		p.X1867_splice	ENST00000382044	NM_001141980.1	1867																																														NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007681	45007681	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	94	533	0	ENST00000558401.1:c.128T>C	p.Leu43Pro	p.L43P	ENST00000558401	NM_004048.2	43	cTg/cCg																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	126	642	1	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																													NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	339452	339452	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	190	1140	0	ENST00000262320.3:c.2450A>G	p.Lys817Arg	p.K817R	ENST00000262320	NM_003502.3	817	aAg/aGg																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23649272	23649272	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs202194596		P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	28	569	0	ENST00000261584.4:c.110G>A	p.Arg37His	p.R37H	ENST00000261584	NM_024675.3	37	cGt/cAt																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	202	831	0	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68849467	68849467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	219	904	1	ENST00000261769.5:c.1370C>T	p.Thr457Met	p.T457M	ENST00000261769	NM_004360.3	457	aCg/aTg																																													NEWRECORD																																		
ALOX12B	242	MSKCC	GRCh37	17	7989484	7989484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	183	940	0	ENST00000319144.4:c.202C>T	p.Arg68Cys	p.R68C	ENST00000319144	NM_001139.2	68	Cgc/Tgc																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	12028624	12028624	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	100	493	0	ENST00000353533.5:c.827A>T	p.Asp276Val	p.D276V	ENST00000353533	NM_003010.3	276	gAc/gTc																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15961370	15961370	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	131	751	0	ENST00000268712.3:c.6019A>G	p.Thr2007Ala	p.T2007A	ENST00000268712	NM_006311.3	2007	Acc/Gcc																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17120460	17120460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	256	886	0	ENST00000285071.4:c.1099C>T	p.His367Tyr	p.H367Y	ENST00000285071	NM_144997.5	367	Cac/Tac																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29490382	29490382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	164	642	1	ENST00000358273.4:c.467G>A	p.Arg156His	p.R156H	ENST00000358273	NM_001042492.2	156	cGc/cAc																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	110	498	1	ENST00000447079.4:c.4382delG	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	197	889	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56437531	56437531	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	240	951	0	ENST00000407977.2:c.931del	p.Leu311SerfsTer108	p.L311Sfs*108	ENST00000407977		311	Ctc/tc																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	267	1020	3	ENST00000407977.2:c.349delC	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59885827	59885827	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	104	533	1	ENST00000259008.2:c.918+1G>A		p.X306_splice	ENST00000259008	NM_032043.2	306																																														NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63554390	63554390	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	178	955	0	ENST00000307078.5:c.349T>C	p.Phe117Leu	p.F117L	ENST00000307078	NM_004655.3	117	Ttc/Ctc																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63554645	63554645	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	164	718	1	ENST00000307078.5:c.94del	p.Glu32ArgfsTer44	p.E32Rfs*44	ENST00000307078	NM_004655.3	32	Gag/ag																																													NEWRECORD																																		
PIK3C3	5289	MSKCC	GRCh37	18	39535279	39535279	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	20	312	0	ENST00000262039.4:c.23A>G	p.His8Arg	p.H8R	ENST00000262039	NM_002647.2	8	cAc/cGc																																													NEWRECORD																																		
CARM1	10498	MSKCC	GRCh37	19	11015725	11015725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	198	794	0	ENST00000327064.4:c.319G>A	p.Val107Ile	p.V107I	ENST00000327064	NM_199141.1	107	Gtc/Atc																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11101922	11101922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1134	315	1270	2	ENST00000344626.4:c.1342C>T	p.Arg448Cys	p.R448C	ENST00000344626	NM_003072.3	448	Cgc/Tgc																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11144844	11144844	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	218	836	0	ENST00000344626.4:c.3919G>T	p.Ala1307Ser	p.A1307S	ENST00000344626	NM_003072.3	1307	Gcc/Tcc																																													NEWRECORD																																		
DNAJB1	3337	MSKCC	GRCh37	19	14626865	14626865	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	307	1035	0	ENST00000254322.2:c.910del	p.Leu304SerfsTer17	p.L304Sfs*17	ENST00000254322	NM_006145.1	304	Ctc/tc																																													NEWRECORD																																		
PIK3R2	5296	MSKCC	GRCh37	19	18279675	18279675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	150	722	1	ENST00000222254.8:c.1948A>G	p.Ser650Gly	p.S650G	ENST00000222254	NM_005027.3	650	Agc/Ggc																																													NEWRECORD																																		
UPF1	5976	MSKCC	GRCh37	19	18961039	18961039	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	165	752	0	ENST00000262803.5:c.617T>C	p.Val206Ala	p.V206A	ENST00000262803	NM_002911.3	206	gTg/gCg																																													NEWRECORD																																		
BBC3	27113	MSKCC	GRCh37	19	47731527	47731527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	39	123	0	ENST00000449228.1:c.265G>A	p.Ala89Thr	p.A89T	ENST00000449228	NM_001127240.2	89	Gcc/Acc																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50910318	50910318	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201804732		P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	336	1277	1	ENST00000440232.2:c.1573C>T	p.Arg525Trp	p.R525W	ENST00000440232	NM_002691.3	525	Cgg/Tgg																																													NEWRECORD																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52716322	52716322	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	27	890	0	ENST00000322088.6:c.766T>C	p.Ser256Pro	p.S256P	ENST00000322088	NM_014225.5	256	Tcc/Ccc																																													NEWRECORD																																		
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1318	313	1504	5	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																													NEWRECORD																																		
CENPA	1058	MSKCC	GRCh37	2	27009125	27009126	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	96	559	0	ENST00000335756.4:c.65dup	p.Thr23AspfsTer55	p.T23Dfs*55	ENST00000335756	NM_001809.3	21	acc/aCcc																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29498064	29498064	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	148	979	0	ENST00000389048.3:c.1942A>G	p.Thr648Ala	p.T648A	ENST00000389048	NM_004304.4	648	Aca/Gca																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47635614	47635614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	220	996	4	ENST00000233146.2:c.286C>T	p.Arg96Cys	p.R96C	ENST00000233146	NM_000251.2	96	Cgt/Tgt																																													NEWRECORD																																		
REL	5966	MSKCC	GRCh37	2	61147777	61147777	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	93	383	1	ENST00000295025.8:c.1087G>A	p.Glu363Lys	p.E363K	ENST00000295025	NM_002908.2	363	Gaa/Aaa																																													NEWRECORD																																		
PMS1	5378	MSKCC	GRCh37	2	190738339	190738339	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	102	514	0	ENST00000441310.2:c.2591A>G	p.Glu864Gly	p.E864G	ENST00000441310	NM_000534.4	864	gAa/gGa																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198267387	198267387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	138	812	1	ENST00000335508.6:c.1970C>T	p.Ser657Phe	p.S657F	ENST00000335508	NM_012433.2	657	tCc/tTc																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202149728	202149728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	173	906	2	ENST00000358485.4:c.1173del	p.Ile392SerfsTer4	p.I392Sfs*4	ENST00000358485	NM_001080125.1	390	gCc/gc																																													NEWRECORD																																		
IDH1	3417	MSKCC	GRCh37	2	209108175	209108175	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	139	645	0	ENST00000345146.2:c.674A>C	p.Asp225Ala	p.D225A	ENST00000345146	NM_005896.2	225	gAc/gCc																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212522477	212522477	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	111	495	0	ENST00000342788.4:c.1946+2T>C		p.X649_splice	ENST00000342788	NM_005235.2	649																																														NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212812268	212812268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	64	454	0	ENST00000342788.4:c.308G>A	p.Arg103His	p.R103H	ENST00000342788	NM_005235.2	103	cGc/cAc																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212812320	212812320	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	21	384	0	ENST00000342788.4:c.256T>C	p.Tyr86His	p.Y86H	ENST00000342788	NM_005235.2	86	Tac/Cac																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212989593	212989593	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	128	428	0	ENST00000342788.4:c.118T>C	p.Ser40Pro	p.S40P	ENST00000342788	NM_005235.2	40	Tct/Cct																																													NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31374386	31374386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	156	878	0	ENST00000328111.2:c.385G>A	p.Gly129Ser	p.G129S	ENST00000328111	NM_006892.3	129	Ggc/Agc																																													NEWRECORD																																		
NCOA3	8202	MSKCC	GRCh37	20	46275918	46275918	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	140	851	0	ENST00000371998.3:c.3354G>T	p.Gln1118His	p.Q1118H	ENST00000371998		1118	caG/caT																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484607	57484607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	145	661	1	ENST00000371085.3:c.691C>T	p.Arg231Cys	p.R231C	ENST00000371085	NM_000516.4	231	Cgc/Tgc																																													NEWRECORD																																		
ERG	2078	MSKCC	GRCh37	21	39817378	39817378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	172	658	1	ENST00000288319.7:c.185C>T	p.Ala62Val	p.A62V	ENST00000288319	NM_182918.3	62	gCc/gTc																																													NEWRECORD																																		
VHL	7428	MSKCC	GRCh37	3	10191600	10191600	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	78	775	0	ENST00000256474.2:c.593T>C	p.Leu198Pro	p.L198P	ENST00000256474	NM_000551.3	198	cTg/cCg																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	131	546	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																													NEWRECORD																																		
MLH1	4292	MSKCC	GRCh37	3	37053591	37053591	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	124	643	0	ENST00000231790.2:c.677+1G>A		p.X226_splice	ENST00000231790	NM_000249.3	226																																														NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41277885	41277885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	83	630	1	ENST00000349496.5:c.1849G>A	p.Val617Ile	p.V617I	ENST00000349496	NM_001904.3	617	Gtc/Atc																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52623187	52623187	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	177	775	0	ENST00000394830.3:c.2864del	p.Asn955ThrfsTer53	p.N955Tfs*53	ENST00000394830	NM_018313.4	955	aAc/ac																																													NEWRECORD																																		
WWTR1	25937	MSKCC	GRCh37	3	149374736	149374736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	236	1120	1	ENST00000360632.3:c.358G>A	p.Val120Met	p.V120M	ENST00000360632	NM_015472.4	120	Gtg/Atg																																													NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185181349	185181351	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	93	457	0	ENST00000265026.3:c.1295_1297del	p.Glu432del	p.E432del	ENST00000265026	NM_004721.4	430	agAGAa/aga																																													NEWRECORD																																		
BCL6	604	MSKCC	GRCh37	3	187446165	187446165	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	215	1104	0	ENST00000232014.4:c.1523A>G	p.Tyr508Cys	p.Y508C	ENST00000232014	NM_001130845.1	508	tAc/tGc																																													NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1806696	1806696	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	309	1218	2	ENST00000260795.2:c.1412G>A	p.Arg471Gln	p.R471Q	ENST00000260795		471	cGg/cAg																																													NEWRECORD																																		
WHSC1	7468	MSKCC	GRCh37	4	1952803	1952803	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144714547		P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	139	555	0	ENST00000382891.5:c.1886C>T	p.Ser629Leu	p.S629L	ENST00000382891	NM_133335.3	629	tCg/tTg																																													NEWRECORD																																		
WHSC1	7468	MSKCC	GRCh37	4	1980515	1980515	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	277	1293	2	ENST00000382891.5:c.3977A>G	p.His1326Arg	p.H1326R	ENST00000382891	NM_133335.3	1326	cAt/cGt																																													NEWRECORD																																		
PHOX2B	8929	MSKCC	GRCh37	4	41748244	41748245	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1394	386	1387	1	ENST00000226382.2:c.524dup	p.Ser176ValfsTer2	p.S176Vfs*2	ENST00000226382	NM_003924.3	175	aag/aaAg																																													NEWRECORD																																		
FAM175A	84142	MSKCC	GRCh37	4	84391455	84391456	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	89	504	0	ENST00000321945.7:c.376dup	p.Ser126PhefsTer30	p.S126Ffs*30	ENST00000321945	NM_139076.2	126	tca/tTca																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106157134	106157134	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	162	614	0	ENST00000380013.4:c.2035A>G	p.Thr679Ala	p.T679A	ENST00000380013	NM_001127208.2	679	Act/Gct																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153247373	153247373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	97	369	0	ENST00000281708.4:c.1429G>A	p.Gly477Ser	p.G477S	ENST00000281708	NM_033632.3	477	Ggt/Agt																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187539257	187539257	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	113	512	0	ENST00000441802.2:c.8483T>C	p.Val2828Ala	p.V2828A	ENST00000441802	NM_005245.3	2828	gTa/gCa																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187557914	187557914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	202	704	0	ENST00000441802.2:c.3797C>T	p.Ala1266Val	p.A1266V	ENST00000441802	NM_005245.3	1266	gCc/gTc																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187630794	187630794	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	49	797	0	ENST00000441802.2:c.188T>G	p.Ile63Ser	p.I63S	ENST00000441802	NM_005245.3	63	aTt/aGt																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1271301	1271301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	272	899	0	ENST00000310581.5:c.2401G>A	p.Ala801Thr	p.A801T	ENST00000310581	NM_198253.2	801	Gcc/Acc																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295052	1295052	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	33	263	0	ENST00000310581.5:c.53A>G	p.Tyr18Cys	p.Y18C	ENST00000310581	NM_198253.2	18	tAc/tGc																																													NEWRECORD																																		
DROSHA	29102	MSKCC	GRCh37	5	31429580	31429580	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	29	644	0	ENST00000344624.3:c.3216+2T>C		p.X1072_splice	ENST00000344624		1072																																														NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67588966	67588966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	75	408	0	ENST00000274335.5:c.1057G>A	p.Gly353Arg	p.G353R	ENST00000274335		353	Ggg/Agg																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67590974	67590974	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	33	167	0	ENST00000274335.5:c.1569-2A>G		p.X523_splice	ENST00000274335		523																																														NEWRECORD																																		
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	183	1031	13	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86672712	86672712	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	44	325	0	ENST00000274376.6:c.2199G>T	p.Lys733Asn	p.K733N	ENST00000274376	NM_002890.2	733	aaG/aaT																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	115	433	0	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149502657	149502657	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	186	779	0	ENST00000261799.4:c.2131C>G	p.Pro711Ala	p.P711A	ENST00000261799	NM_002609.3	711	Ccc/Gcc																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176719121	176719121	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	125	330	0	ENST00000439151.2:c.6425A>G	p.Tyr2142Cys	p.Y2142C	ENST00000439151	NM_022455.4	2142	tAc/tGc																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180030253	180030253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1243	274	1548	0	ENST00000261937.6:c.4031G>T	p.Ser1344Ile	p.S1344I	ENST00000261937	NM_182925.4	1344	aGc/aTc																																													NEWRECORD																																		
HIST1H2BD	3017	MSKCC	GRCh37	6	26158645	26158645	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	73	260	0	ENST00000289316.2:c.248A>G	p.His83Arg	p.H83R	ENST00000289316	NM_138720.2	83	cAt/cGt																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30670331	30670331	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	121	561	0	ENST00000376406.3:c.6101A>G	p.Lys2034Arg	p.K2034R	ENST00000376406	NM_014641.2	2034	aAg/aGg																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32163668	32163668	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	113	696	0	ENST00000375023.3:c.5558A>G	p.His1853Arg	p.H1853R	ENST00000375023	NM_004557.3	1853	cAt/cGt																																													NEWRECORD																																		
TAP1	6890	MSKCC	GRCh37	6	32821331	32821331	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1218	295	1339	1	ENST00000354258.4:c.263T>C	p.Leu88Pro	p.L88P	ENST00000354258	NM_000593.5	88	cTa/cCa																																													NEWRECORD																																		
PNRC1	10957	MSKCC	GRCh37	6	89793650	89793650	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	75	453	0	ENST00000336032.3:c.719T>A	p.Val240Asp	p.V240D	ENST00000336032	NM_006813.2	240	gTt/gAt																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	93956645	93956645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	151	565	0	ENST00000369303.4:c.2591G>A	p.Gly864Asp	p.G864D	ENST00000369303	NM_004440.3	864	gGc/gAc																																													NEWRECORD																																		
PRDM1	639	MSKCC	GRCh37	6	106553095	106553095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	234	888	0	ENST00000369096.4:c.1060A>C	p.Ser354Arg	p.S354R	ENST00000369096	NM_001198.3	354	Agc/Cgc																																													NEWRECORD																																		
FYN	2534	MSKCC	GRCh37	6	112024139	112024139	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	133	851	0	ENST00000368678.4:c.646A>G	p.Thr216Ala	p.T216A	ENST00000368678		216	Acc/Gcc																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2962324	2962324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	285	1143	1	ENST00000396946.4:c.2213G>T	p.Trp738Leu	p.W738L	ENST00000396946	NM_032415.4	738	tGg/tTg																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	264	1118	5	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																													NEWRECORD																																		
RAC1	5879	MSKCC	GRCh37	7	6431650	6431650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	212	1113	1	ENST00000356142.4:c.203G>A	p.Arg68His	p.R68H	ENST00000356142	NM_018890.3	68	cGc/cAc																																													NEWRECORD																																		
ETV1	2115	MSKCC	GRCh37	7	13946143	13946143	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	201	863	0	ENST00000405192.2:c.953del	p.Leu318TrpfsTer2	p.L318Wfs*2	ENST00000405192	NM_001163147.1	318	tTg/tg																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151845702	151845702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	173	845	1	ENST00000262189.6:c.13310C>T	p.Thr4437Met	p.T4437M	ENST00000262189	NM_170606.2	4437	aCg/aTg																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874149	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	140	765	0	ENST00000262189.6:c.8389_8390del	p.Lys2797GlyfsTer11	p.K2797Gfs*11	ENST00000262189	NM_170606.2	2797	AAg/g																																													NEWRECORD																																		
WHSC1L1	54904	MSKCC	GRCh37	8	38188987	38188987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	182	1235	1	ENST00000317025.8:c.1027G>A	p.Ala343Thr	p.A343T	ENST00000317025	NM_023034.1	343	Gca/Aca																																													NEWRECORD																																		
LYN	4067	MSKCC	GRCh37	8	56879301	56879301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	226	971	0	ENST00000519728.1:c.818C>T	p.Ala273Val	p.A273V	ENST00000519728	NM_002350.3	273	gCt/gTt																																													NEWRECORD																																		
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	194	1025	6	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																													NEWRECORD																																		
AGO2	27161	MSKCC	GRCh37	8	141566375	141566375	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	80	570	0	ENST00000220592.5:c.1037T>C	p.Ile346Thr	p.I346T	ENST00000220592	NM_012154.3	346	aTt/aCt																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8499765	8499765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	112	908	0	ENST00000356435.5:c.2204C>T	p.Pro735Leu	p.P735L	ENST00000356435		735	cCc/cTc																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	226	919	0	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133759623	133759623	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	271	1312	0	ENST00000318560.5:c.1950del	p.Leu651TrpfsTer43	p.L651Wfs*43	ENST00000318560	NM_005157.4	649	aCc/ac																																													NEWRECORD																																		
RXRA	6256	MSKCC	GRCh37	9	137293526	137293526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1326	362	1608	1	ENST00000481739.1:c.77G>A	p.Gly26Asp	p.G26D	ENST00000481739	NM_002957.4	26	gGc/gAc																																													NEWRECORD																																		
TRAF2	7186	MSKCC	GRCh37	9	139811026	139811026	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	267	1050	1	ENST00000247668.2:c.637C>T	p.Arg213Ter	p.R213*	ENST00000247668	NM_021138.3	213	Cga/Tga																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39933400	39933400	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	208	941	0	ENST00000378444.4:c.1199del	p.Gly400AlafsTer42	p.G400Afs*42	ENST00000378444	NM_001123385.1	400	gGc/gc																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39934289	39934289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	258	1022	1	ENST00000378444.4:c.310G>A	p.Ala104Thr	p.A104T	ENST00000378444	NM_001123385.1	104	Gct/Act																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70350054	70350054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	128	554	3	ENST00000374080.3:c.4037G>A	p.Arg1346His	p.R1346H	ENST00000374080		1346	cGc/cAc																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76937797	76937797	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	126	902	0	ENST00000373344.5:c.2951A>G	p.Gln984Arg	p.Q984R	ENST00000373344	NM_000489.3	984	cAg/cGg																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123220559	123220560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	194	737	0	ENST00000218089.9:c.3222dup	p.Ser1075IlefsTer12	p.S1075Ifs*12	ENST00000218089	NM_001042749.1	1072	-/A																																													NEWRECORD																																		
CBL	867	MSKCC	GRCh37	11	119077232	119077233	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAC			P-0020633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	161	1140	0	ENST00000264033.4:c.125_127dup	p.His42dup	p.H42dup	ENST00000264033	NM_005188.3	42	-/CAC																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	626	1050	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																													NEWRECORD																																		
FGF4	2249	MSKCC	GRCh37	11	69589698	69589698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	63	177	0	ENST00000168712.1:c.155C>T	p.Ala52Val	p.A52V	ENST00000168712	NM_002007.2	52	gCg/gTg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101300	27101301	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0020588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	166	808	0	ENST00000324856.7:c.4582_4583del	p.Arg1528AsnfsTer3	p.R1528Nfs*3	ENST00000324856	NM_006015.4	1528	CGa/a																																													NEWRECORD																																		
LATS2	26524	MSKCC	GRCh37	13	21549394	21549394	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148935054		P-0020588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	42	624	0	ENST00000382592.4:c.2882G>A	p.Arg961Gln	p.R961Q	ENST00000382592	NM_014572.2	961	cGg/cAg																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38060664	38060664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	769	1108	4	ENST00000250448.2:c.1325C>A	p.Ala442Asp	p.A442D	ENST00000250448	NM_004496.3	442	gCc/gAc																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	30142898	30142898	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755697363		P-0020588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	509	1018	0	ENST00000389048.3:c.628G>A	p.Ala210Thr	p.A210T	ENST00000389048	NM_004304.4	210	Gcc/Acc																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202141617	202141617	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	132	647	0	ENST00000358485.4:c.905A>G	p.Asn302Ser	p.N302S	ENST00000358485	NM_001080125.1	302	aAt/aGt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175069	112175069	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	98	295	0	ENST00000257430.4:c.3778C>T	p.Gln1260Ter	p.Q1260*	ENST00000257430	NM_000038.5	1260	Cag/Tag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0020665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	153	567	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	101	595	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																													NEWRECORD																																		
RTEL1	51750	MSKCC	GRCh37	20	62298844	62298844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	117	601	0	ENST00000508582.2:c.709C>T	p.Arg237Trp	p.R237W	ENST00000508582		237	Cgg/Tgg																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0020506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	338	688	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577561	7577566	+	inframe_deletion	In_Frame_Del	DEL	ACTGTT	ACTGTT	-			P-0020506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	327	886	1	ENST00000269305.4:c.715_720delAACAGT	p.Asn239_Ser240del	p.N239_S240del	ENST00000269305	NM_001126112.2	239	AACAGT/-																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187560938	187560938	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	33	533	0	ENST00000441802.2:c.3581-1G>A		p.X1194_splice	ENST00000441802	NM_005245.3	1194																																														NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	53	700	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28895610	28895610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	24	524	0	ENST00000282397.4:c.3164G>A	p.Arg1055Lys	p.R1055K	ENST00000282397	NM_002019.4	1055	aGa/aAa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	57	771	1	ENST00000269305.4:c.376-2A>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																														NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31017769	31017769	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	46	582	0	ENST00000375687.4:c.631G>T	p.Ala211Ser	p.A211S	ENST00000375687	NM_015338.5	211	Gcc/Tcc																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57863371	57863371	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	28	776	0	ENST00000228682.2:c.1466G>C	p.Gly489Ala	p.G489A	ENST00000228682	NM_005269.2	489	gGc/gCc																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88680722	88680722	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	39	679	2	ENST00000360948.2:c.535del	p.Glu179ArgfsTer24	p.E179Rfs*24	ENST00000360948	NM_001012338.2	179	Gag/ag																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29462640	29462640	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	71	801	0	ENST00000389048.3:c.2261C>A	p.Ser754Tyr	p.S754Y	ENST00000389048	NM_004304.4	754	tCc/tAc																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41536169	41536169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	38	641	1	ENST00000263253.7:c.1786G>T	p.Asp596Tyr	p.D596Y	ENST00000263253	NM_001429.3	596	Gat/Tat																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66218783	66218783	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	29	430	0	ENST00000273854.3:c.2275G>C	p.Gly759Arg	p.G759R	ENST00000273854	NM_004439.5	759	Ggc/Cgc																																													NEWRECORD																																		
TAP2	6891	MSKCC	GRCh37	6	32797181	32797181	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	39	614	0	ENST00000374899.4:c.1928A>G	p.Gln643Arg	p.Q643R	ENST00000374899	NM_018833.2	643	cAg/cGg																																													NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50444293	50444293	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	24	408	0	ENST00000331340.3:c.226del	p.Glu76LysfsTer17	p.E76Kfs*17	ENST00000331340	NM_006060.4	75	Ggg/gg																																													NEWRECORD																																		
PREX2	80243	MSKCC	GRCh37	8	68942842	68942842	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	59	690	0	ENST00000288368.4:c.654G>T	p.Met218Ile	p.M218I	ENST00000288368	NM_024870.2	218	atG/atT																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53223348	53223358	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGAGGGGGT	TCTGAGGGGGT	-			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	31	704	0	ENST00000375401.3:c.4001_4011del	p.Asp1334GlyfsTer9	p.D1334Gfs*9	ENST00000375401	NM_004187.3	1334	gACCCCCTCAGA/g																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70357441	70357441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	60	804	0	ENST00000374080.3:c.5782C>T	p.His1928Tyr	p.H1928Y	ENST00000374080		1928	Cat/Tat																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	455	1124	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	146	792	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0020636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	82	424	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	132	372	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52620522	52620523	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCAAATACAGA			P-0020636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	167	794	0	ENST00000394830.3:c.3220_3230dup	p.Asn1078LeufsTer60	p.N1078Lfs*60	ENST00000394830	NM_018313.4	1077	gca/gcTCTGTATTTGCa																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	94	571	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	80	547	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	311	819	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
MEF2B	100271849	MSKCC	GRCh37	19	19256768	19256769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1202792889		P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	96	804	0	ENST00000162023.5:c.944dup	p.Val316SerfsTer6	p.V316Sfs*6	ENST00000162023		315	cca/ccCa																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	181	876	2	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																													NEWRECORD																																		
MAX	4149	MSKCC	GRCh37	14	65560514	65560514	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	151	589	0	ENST00000358664.4:c.83A>G	p.His28Arg	p.H28R	ENST00000358664	NM_002382.4	28	cAt/cGt																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	210	495	3	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	175	1262	2	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86659182	86659182	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	71	240	0	ENST00000274376.6:c.1475del	p.Asn492IlefsTer6	p.N492Ifs*6	ENST00000274376	NM_002890.2	491	Aaa/aa																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	74	333	1	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																													NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	175	1121	9	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1279516	1279516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	204	1250	2	ENST00000310581.5:c.2020G>A	p.Gly674Ser	p.G674S	ENST00000310581	NM_198253.2	674	Ggc/Agc																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	152	1062	3	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	144	701	2	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	179	1103	6	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																													NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1805473	1805473	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188723332		P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	174	1109	0	ENST00000260795.2:c.985G>A	p.Val329Ile	p.V329I	ENST00000260795		329	Gtc/Atc																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	132	867	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030692	48030692	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	37	503	2	ENST00000234420.5:c.3312delT	p.Phe1104LeufsTer11	p.F1104Lfs*11	ENST00000234420	NM_000179.2	1102	acT/ac																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89337296	89337296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	161	784	0	ENST00000301030.4:c.7735C>T	p.Arg2579Cys	p.R2579C	ENST00000301030	NM_001256183.1	2579	Cgc/Tgc																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3807363	3807364	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	84	468	0	ENST00000262367.5:c.3623dupC	p.Gln1209ThrfsTer25	p.Q1209Tfs*25	ENST00000262367	NM_004380.2	1208	cca/ccCa																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15272378	15272378	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199620476		P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	221	1544	6	ENST00000263388.2:c.6061G>A	p.Val2021Met	p.V2021M	ENST00000263388	NM_000435.2	2021	Gtg/Atg																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70405652	70405652	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	97	643	0	ENST00000373644.4:c.3171del	p.Lys1057AsnfsTer25	p.K1057Nfs*25	ENST00000373644	NM_030625.2	1056	Aaa/aa																																													NEWRECORD																																		
ETV1	2115	MSKCC	GRCh37	7	13946150	13946150	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1226	72	756	2	ENST00000405192.2:c.946C>T	p.Gln316Ter	p.Q316*	ENST00000405192	NM_001163147.1	316	Cag/Tag																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40944592	40944592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	100	526	0	ENST00000373198.4:c.1910G>A	p.Arg637Gln	p.R637Q	ENST00000373198	NM_133170.3	637	cGg/cAg																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32954273	32954273	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	131	570	1	ENST00000380152.3:c.9253delA	p.Thr3085GlnfsTer19	p.T3085Qfs*19	ENST00000380152		3083	Aaa/aa																																													NEWRECORD																																		
RAD52	5893	MSKCC	GRCh37	12	1042175	1042175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	67	962	0	ENST00000358495.3:c.50C>T	p.Ala17Val	p.A17V	ENST00000358495	NM_134424.2	17	gCt/gTt																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32930730	32930730	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs74047012		P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	139	635	0	ENST00000380152.3:c.7601C>T	p.Ala2534Val	p.A2534V	ENST00000380152		2534	gCg/gTg																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2222209	2222209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	66	1319	1	ENST00000398665.3:c.3041G>A	p.Gly1014Glu	p.G1014E	ENST00000398665	NM_032482.2	1014	gGg/gAg																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119794	70119794	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	64	995	0	ENST00000245479.2:c.800del	p.Pro267LeufsTer12	p.P267Lfs*12	ENST00000245479	NM_000346.3	266	Ccc/cc																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37686900	37686901	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	36	661	0	ENST00000447079.4:c.3810dup	p.Gly1271ArgfsTer13	p.G1271Rfs*13	ENST00000447079	NM_015083.1	1268	-/C																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15288788	15288789	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	28	363	0	ENST00000263388.2:c.3950dup	p.Gly1318ArgfsTer245	p.G1318Rfs*245	ENST00000263388	NM_000435.2	1317	cca/ccCa																																													NEWRECORD																																		
PIK3R3	8503	MSKCC	GRCh37	1	46546324	46546324	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	98	513	0	ENST00000262741.5:c.205del	p.Asp69IlefsTer7	p.D69Ifs*7	ENST00000262741	NM_003629.3	69	Gat/at																																													NEWRECORD																																		
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	197	894	11	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																													NEWRECORD																																		
DUSP4	1846	MSKCC	GRCh37	8	29194905	29194905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	231	1028	1	ENST00000240100.2:c.823C>T	p.Arg275Cys	p.R275C	ENST00000240100	NM_001394.6	275	Cgc/Tgc																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225368388	225368388	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	145	513	0	ENST00000264414.4:c.1358del	p.Asn453ThrfsTer2	p.N453Tfs*2	ENST00000264414	NM_003590.4	453	aAc/ac																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577523	7577523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	41	960	0	ENST00000269305.4:c.758C>T	p.Thr253Ile	p.T253I	ENST00000269305	NM_001126112.2	253	aCc/aTc																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43608300	43608300	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	195	1244	1	ENST00000355710.3:c.1649-1G>T		p.X550_splice	ENST00000355710	NM_020975.4	550																																														NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16245539	16245539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	87	590	0	ENST00000375759.3:c.1514G>A	p.Arg505His	p.R505H	ENST00000375759	NM_015001.2	505	cGc/cAc																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16245932	16245932	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760738868		P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	91	440	0	ENST00000375759.3:c.1555G>A	p.Val519Met	p.V519M	ENST00000375759	NM_015001.2	519	Gtg/Atg																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16262337	16262337	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	56	321	0	ENST00000375759.3:c.9602C>A	p.Pro3201Gln	p.P3201Q	ENST00000375759	NM_015001.2	3201	cCa/cAa																																													NEWRECORD																																		
CSF3R	1441	MSKCC	GRCh37	1	36937090	36937090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	112	738	0	ENST00000361632.4:c.1229C>T	p.Ala410Val	p.A410V	ENST00000361632		410	gCc/gTc																																													NEWRECORD																																		
CSF3R	1441	MSKCC	GRCh37	1	36941121	36941121	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	133	913	0	ENST00000361632.4:c.218del	p.Gly73AlafsTer31	p.G73Afs*31	ENST00000361632		73	gGc/gc																																													NEWRECORD																																		
NUF2	83540	MSKCC	GRCh37	1	163309260	163309260	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	125	526	0	ENST00000271452.3:c.604del	p.Thr202ArgfsTer2	p.T202Rfs*2	ENST00000271452	NM_145697.2	200	cAa/ca																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70451504	70451504	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	71	843	0	ENST00000373644.4:c.6344A>G	p.Asp2115Gly	p.D2115G	ENST00000373644	NM_030625.2	2115	gAc/gGc																																													NEWRECORD																																		
KMT2A	4297	MSKCC	GRCh37	11	118376995	118376995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	76	458	3	ENST00000534358.1:c.10388C>T	p.Ala3463Val	p.A3463V	ENST00000534358	NM_005933.3	3463	gCc/gTc																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	432872	432872	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	148	667	0	ENST00000399788.2:c.2044A>T	p.Thr682Ser	p.T682S	ENST00000399788	NM_001042603.1	682	Aca/Tca																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46298731	46298731	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	109	437	0	ENST00000334344.6:c.5378A>G	p.His1793Arg	p.H1793R	ENST00000334344	NM_152641.2	1793	cAt/cGt																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49424524	49424524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	153	833	0	ENST00000301067.7:c.13699C>T	p.Pro4567Ser	p.P4567S	ENST00000301067	NM_003482.3	4567	Cct/Tct																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49440106	49440106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	178	947	0	ENST00000301067.7:c.4520G>A	p.Cys1507Tyr	p.C1507Y	ENST00000301067	NM_003482.3	1507	tGc/tAc																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49445149	49445149	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	225	1225	0	ENST00000301067.7:c.2317delC	p.Gln773SerfsTer157	p.Q773Sfs*157	ENST00000301067	NM_003482.3	773	Cag/ag																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49449088	49449088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	172	726	2	ENST00000301067.7:c.20C>T	p.Ala7Val	p.A7V	ENST00000301067	NM_003482.3	7	gCt/gTt																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56492552	56492552	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	165	792	0	ENST00000267101.3:c.2702T>C	p.Val901Ala	p.V901A	ENST00000267101	NM_001982.3	901	gTt/gCt																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56495417	56495417	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	155	843	1	ENST00000267101.3:c.3607A>G	p.Arg1203Gly	p.R1203G	ENST00000267101	NM_001982.3	1203	Agg/Ggg																																													NEWRECORD																																		
CDK4	1019	MSKCC	GRCh37	12	58145478	58145478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	134	450	0	ENST00000257904.6:c.23C>A	p.Pro8Gln	p.P8Q	ENST00000257904	NM_000075.3	8	cCa/cAa																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32971137	32971137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	128	737	0	ENST00000380152.3:c.9604C>A	p.Pro3202Thr	p.P3202T	ENST00000380152		3202	Ccg/Acg																																													NEWRECORD																																		
PRKD1	5587	MSKCC	GRCh37	14	30098282	30098282	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	129	711	0	ENST00000331968.5:c.1690A>G	p.Ile564Val	p.I564V	ENST00000331968	NM_002742.2	564	Att/Gtt																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67477178	67477178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	141	706	2	ENST00000327367.4:c.985G>A	p.Ala329Thr	p.A329T	ENST00000327367	NM_005902.3	329	Gcc/Acc																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88423545	88423545	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	152	826	0	ENST00000360948.2:c.2290T>C	p.Phe764Leu	p.F764L	ENST00000360948	NM_001012338.2	764	Ttc/Ctc																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2136381	2136381	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	153	802	2	ENST00000219476.3:c.4849+1G>A		p.X1617_splice	ENST00000219476	NM_000548.3	1617																																														NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81891943	81891943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	138	612	0	ENST00000359376.3:c.413C>T	p.Thr138Met	p.T138M	ENST00000359376	NM_002661.3	138	aCg/aTg																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89357069	89357069	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	153	765	0	ENST00000301030.4:c.565A>G	p.Ser189Gly	p.S189G	ENST00000301030	NM_001256183.1	189	Agc/Ggc																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16004645	16004646	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	172	780	0	ENST00000268712.3:c.2608dup	p.Arg870LysfsTer9	p.R870Kfs*9	ENST00000268712	NM_006311.3	870	agg/aAgg																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37627380	37627380	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	54	866	0	ENST00000447079.4:c.1295A>G	p.Asn432Ser	p.N432S	ENST00000447079	NM_015083.1	432	aAc/aGc																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37681117	37681117	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	44	552	0	ENST00000447079.4:c.3286T>G	p.Ser1096Ala	p.S1096A	ENST00000447079	NM_015083.1	1096	Tct/Gct																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63530129	63530132	+	frameshift_variant	Frame_Shift_Del	DEL	AAGT	AAGT	-			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	117	722	0	ENST00000307078.5:c.2303_2306del	p.Tyr768PhefsTer13	p.Y768Ffs*13	ENST00000307078	NM_004655.3	768	tACTTt/tt																																													NEWRECORD																																		
YES1	7525	MSKCC	GRCh37	18	724461	724461	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	189	1068	0	ENST00000314574.4:c.1595C>A	p.Ala532Asp	p.A532D	ENST00000314574	NM_005433.3	532	gCt/gAt																																													NEWRECORD																																		
TCF3	6929	MSKCC	GRCh37	19	1621158	1621158	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	163	1196	0	ENST00000344749.5:c.988del	p.Asp330MetfsTer64	p.D330Mfs*64	ENST00000344749	NM_001136139.2	330	Gat/at																																													NEWRECORD																																		
TCF3	6929	MSKCC	GRCh37	19	1625669	1625669	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	213	1259	3	ENST00000344749.5:c.405del	p.Leu138CysfsTer6	p.L138Cfs*6	ENST00000344749	NM_001136139.2	135	ccC/cc																																													NEWRECORD																																		
CARM1	10498	MSKCC	GRCh37	19	11031170	11031170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	199	1028	2	ENST00000327064.4:c.1255C>T	p.Arg419Trp	p.R419W	ENST00000327064	NM_199141.1	419	Cgg/Tgg																																													NEWRECORD																																		
DNAJB1	3337	MSKCC	GRCh37	19	14627771	14627771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	177	810	0	ENST00000254322.2:c.299C>T	p.Ala100Val	p.A100V	ENST00000254322	NM_006145.1	100	gCc/gTc																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15376248	15376248	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	110	683	0	ENST00000263377.2:c.766delC	p.Gln256SerfsTer27	p.Q256Sfs*27	ENST00000263377	NM_058243.2	256	Cag/ag																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17947959	17947959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	198	1009	2	ENST00000458235.1:c.1765G>A	p.Gly589Ser	p.G589S	ENST00000458235	NM_000215.3	589	Ggc/Agc																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17948772	17948772	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	216	1191	1	ENST00000458235.1:c.1670T>C	p.Val557Ala	p.V557A	ENST00000458235	NM_000215.3	557	gTc/gCc																																													NEWRECORD																																		
KMT2B	9757	MSKCC	GRCh37	19	36214151	36214151	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	225	1189	0	ENST00000222270.7:c.2977C>G	p.Pro993Ala	p.P993A	ENST00000222270	NM_014727.1	993	Cct/Gct																																													NEWRECORD																																		
KMT2B	9757	MSKCC	GRCh37	19	36223124	36223124	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	239	1394	0	ENST00000222270.7:c.5674T>G	p.Ser1892Ala	p.S1892A	ENST00000222270	NM_014727.1	1892	Tct/Gct																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50919053	50919054	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	171	1091	0	ENST00000440232.2:c.2792dup	p.Val933CysfsTer21	p.V933Cfs*21	ENST00000440232	NM_002691.3	930	-/A																																													NEWRECORD																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52716327	52716327	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	180	693	2	ENST00000322088.6:c.771G>A	p.Trp257Ter	p.W257*	ENST00000322088	NM_014225.5	257	tgG/tgA																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25536823	25536823	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	189	1184	3	ENST00000264709.3:c.31del	p.Asp11ThrfsTer61	p.D11Tfs*61	ENST00000264709	NM_175629.2	11	Gac/ac																																													NEWRECORD																																		
NFE2L2	4780	MSKCC	GRCh37	2	178095565	178095565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	123	486	1	ENST00000397062.3:c.1766G>T	p.Gly589Val	p.G589V	ENST00000397062	NM_006164.4	589	gGc/gTc																																													NEWRECORD																																		
IDH1	3417	MSKCC	GRCh37	2	209110147	209110147	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	47	579	0	ENST00000345146.2:c.416A>G	p.Tyr139Cys	p.Y139C	ENST00000345146	NM_005896.2	139	tAc/tGc																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212426734	212426734	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	65	663	0	ENST00000342788.4:c.2381T>C	p.Leu794Pro	p.L794P	ENST00000342788	NM_005235.2	794	cTg/cCg																																													NEWRECORD																																		
TOP1	7150	MSKCC	GRCh37	20	39706232	39706232	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	76	283	0	ENST00000361337.2:c.290C>A	p.Ser97Tyr	p.S97Y	ENST00000361337	NM_003286.2	97	tCt/tAt																																													NEWRECORD																																		
RTEL1	51750	MSKCC	GRCh37	20	62316928	62316928	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	126	813	0	ENST00000508582.2:c.1316T>C	p.Leu439Pro	p.L439P	ENST00000508582		439	cTg/cCg																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41547973	41547973	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	125	745	0	ENST00000263253.7:c.2954A>G	p.Asp985Gly	p.D985G	ENST00000263253	NM_001429.3	985	gAt/gGt																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41568636	41568636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	86	488	0	ENST00000263253.7:c.4586G>A	p.Arg1529Gln	p.R1529Q	ENST00000263253	NM_001429.3	1529	cGa/cAa																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49932644	49932644	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	136	966	0	ENST00000296474.3:c.3227C>A	p.Pro1076His	p.P1076H	ENST00000296474	NM_002447.2	1076	cCc/cAc																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49933268	49933268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	178	1110	0	ENST00000296474.3:c.2842C>T	p.Pro948Ser	p.P948S	ENST00000296474	NM_002447.2	948	Cca/Tca																																													NEWRECORD																																		
SHQ1	55164	MSKCC	GRCh37	3	72897490	72897490	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	78	289	0	ENST00000325599.8:c.2T>C	p.Met1?	p.M1?	ENST00000325599	NM_018130.2	1	aTg/aCg																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134880956	134880956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	131	654	0	ENST00000398015.3:c.1519C>T	p.Arg507Cys	p.R507C	ENST00000398015	NM_004441.4	507	Cgt/Tgt																																													NEWRECORD																																		
FOXL2	668	MSKCC	GRCh37	3	138664649	138664649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	11	163	0	ENST00000330315.3:c.916C>T	p.Pro306Ser	p.P306S	ENST00000330315	NM_023067.3	306	Ccg/Tcg																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66242732	66242732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	84	395	1	ENST00000273854.3:c.1840C>T	p.His614Tyr	p.H614Y	ENST00000273854	NM_004439.5	614	Cat/Tat																																													NEWRECORD																																		
FAM175A	84142	MSKCC	GRCh37	4	84383638	84383638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	151	779	1	ENST00000321945.7:c.1214G>A	p.Arg405Gln	p.R405Q	ENST00000321945	NM_139076.2	405	cGg/cAg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112177423	112177423	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	66	351	0	ENST00000257430.4:c.6132C>A	p.Ser2044Arg	p.S2044R	ENST00000257430	NM_000038.5	2044	agC/agA																																													NEWRECORD																																		
NPM1	4869	MSKCC	GRCh37	5	170819754	170819754	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	79	388	2	ENST00000296930.5:c.393G>T	p.Glu131Asp	p.E131D	ENST00000296930	NM_002520.6	131	gaG/gaT																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30673065	30673065	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	217	1238	0	ENST00000376406.3:c.3895C>T	p.Arg1299Ter	p.R1299*	ENST00000376406	NM_014641.2	1299	Cga/Tga																																													NEWRECORD																																		
PNRC1	10957	MSKCC	GRCh37	6	89790951	89790951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	56	588	1	ENST00000336032.3:c.338G>A	p.Arg113His	p.R113H	ENST00000336032	NM_006813.2	113	cGc/cAc																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117710533	117710533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	18	216	0	ENST00000368508.3:c.1739C>T	p.Pro580Leu	p.P580L	ENST00000368508	NM_002944.2	580	cCt/cTt																																													NEWRECORD																																		
TNFAIP3	7128	MSKCC	GRCh37	6	138192428	138192428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	75	311	2	ENST00000237289.4:c.64C>T	p.Arg22Trp	p.R22W	ENST00000237289	NM_001270507.1	22	Cgg/Tgg																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157099403	157099408	+	inframe_deletion	In_Frame_Del	DEL	CAGCAG	CAGCAG	-			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	26	397	0	ENST00000346085.5:c.357_362del	p.Gln130_Gln131del	p.Q130_Q131del	ENST00000346085	NM_020732.3	114	CAGCAG/-																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151880087	151880088	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	121	613	0	ENST00000262189.6:c.5236_5237del	p.Glu1746ThrfsTer2	p.E1746Tfs*2	ENST00000262189	NM_170606.2	1746	GAa/a																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133730440	133730440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	98	481	0	ENST00000318560.5:c.506G>A	p.Gly169Glu	p.G169E	ENST00000318560	NM_005157.4	169	gGg/gAg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139396503	139396503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	160	1096	3	ENST00000277541.6:c.5422G>A	p.Asp1808Asn	p.D1808N	ENST00000277541	NM_017617.3	1808	Gac/Aac																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	93967841	93967841	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	50	659	0	ENST00000369303.4:c.2086del	p.His696IlefsTer13	p.H696Ifs*13	ENST00000369303	NM_004440.3	696	Cat/at																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	47	453	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
NTRK2	4915	MSKCC	GRCh37	9	87285754	87285754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	34	852	1	ENST00000277120.3:c.91G>A	p.Ala31Thr	p.A31T	ENST00000277120		31	Gcc/Acc																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9857275	9857275	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1426934537		P-0020764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	97	719	0	ENST00000330684.3:c.4126C>T	p.Arg1376Cys	p.R1376C	ENST00000330684	NM_001134407.1	1376	Cgc/Tgc																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	39074470	39074470	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	31	591	0	ENST00000357387.3:c.10A>G	p.Ile4Val	p.I4V	ENST00000357387	NM_152756.3	4	Atc/Gtc																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65301852	65301852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	55	455	0	ENST00000342505.4:c.3187G>A	p.Asp1063Asn	p.D1063N	ENST00000342505	NM_002227.2	1063	Gac/Aac																																													NEWRECORD																																		
NFE2L2	4780	MSKCC	GRCh37	2	178096655	178096655	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	36	513	0	ENST00000397062.3:c.676T>A	p.Tyr226Asn	p.Y226N	ENST00000397062	NM_006164.4	226	Tat/Aat																																													NEWRECORD																																		
DROSHA	29102	MSKCC	GRCh37	5	31495400	31495400	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	39	636	0	ENST00000344624.3:c.1748A>C	p.Asn583Thr	p.N583T	ENST00000344624		583	aAc/aCc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0020661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	243	743	8	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0020661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	143	545	2	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	128	435	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0020661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	58	490	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9858337	9858337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	159	371	0	ENST00000330684.3:c.3064C>T	p.Arg1022Cys	p.R1022C	ENST00000330684	NM_001134407.1	1022	Cgc/Tgc																																													NEWRECORD																																		
TRAF7	84231	MSKCC	GRCh37	16	2225896	2225896	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	253	793	0	ENST00000326181.6:c.1688A>G	p.Tyr563Cys	p.Y563C	ENST00000326181	NM_032271.2	563	tAc/tGc																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15311616	15311616	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	21	106	0	ENST00000263388.2:c.101C>A	p.Ala34Glu	p.A34E	ENST00000263388	NM_000435.2	34	gCg/gAg																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131939628	131939628	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	51	408	0	ENST00000265335.6:c.2414T>A	p.Val805Asp	p.V805D	ENST00000265335		805	gTt/gAt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	24	400	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68842383	68842384	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0020571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	46	715	0	ENST00000261769.5:c.445_446insAC	p.Leu149HisfsTer67	p.L149Hfs*67	ENST00000261769	NM_004360.3	148	-/CA																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151879364	151879364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	51	499	0	ENST00000262189.6:c.5581C>T	p.Arg1861Trp	p.R1861W	ENST00000262189	NM_170606.2	1861	Cgg/Tgg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0020622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	40	390	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37665992	37665992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1293	74	554	0	ENST00000447079.4:c.2644C>T	p.Arg882Trp	p.R882W	ENST00000447079	NM_015083.1	882	Cgg/Tgg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577563	7577565	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0020622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	63	758	1	ENST00000269305.4:c.716_718del	p.Asn239del	p.N239del	ENST00000269305	NM_001126112.2	239	aACAgt/agt																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3900884	3900884	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	35	749	0	ENST00000262367.5:c.212C>G	p.Ser71Trp	p.S71W	ENST00000262367	NM_004380.2	71	tCg/tGg																																													NEWRECORD																																		
CYLD	1540	MSKCC	GRCh37	16	50830294	50830294	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	26	575	1	ENST00000398568.2:c.2737T>A	p.Leu913Met	p.L913M	ENST00000398568	NM_001042412.1	913	Ttg/Atg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	139	826	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0020727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	52	870	1	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																														NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67063633	67063633	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0020727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	104	616	1	ENST00000412916.2:c.82A>T	p.Lys28Ter	p.K28*	ENST00000412916		28	Aag/Tag																																													NEWRECORD																																		
GPS2	2874	MSKCC	GRCh37	17	7217614	7217614	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	104	630	1	ENST00000380728.2:c.313C>T	p.Gln105Ter	p.Q105*	ENST00000380728		105	Cag/Tag																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	12016558	12016558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	114	551	0	ENST00000353533.5:c.694C>A	p.Pro232Thr	p.P232T	ENST00000353533	NM_003010.3	232	Cct/Act																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134977858	134977858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	73	550	1	ENST00000398015.3:c.2851C>T	p.Leu951Phe	p.L951F	ENST00000398015	NM_004441.4	951	Ctc/Ttc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	57	969	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
ETV6	2120	MSKCC	GRCh37	12	12038895	12038895	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	54	625	0	ENST00000396373.4:c.1188A>T	p.Arg396Ser	p.R396S	ENST00000396373	NM_001987.4	396	agA/agT																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23634324	23634324	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	125	1427	1	ENST00000261584.4:c.2962C>T	p.Gln988Ter	p.Q988*	ENST00000261584	NM_024675.3	988	Caa/Taa																																													NEWRECORD																																		
CYLD	1540	MSKCC	GRCh37	16	50813902	50813902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	346	772	4	ENST00000398568.2:c.1456C>T	p.Arg486Cys	p.R486C	ENST00000398568	NM_001042412.1	486	Cgt/Tgt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579375	7579426	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGTAGGTTTTCTGGGAAGGGACAGAAGATGACAGGGGCCAGGAGGGGGCT	CTGGTAGGTTTTCTGGGAAGGGACAGAAGATGACAGGGGCCAGGAGGGGGCT	TCCTGGCCC			P-0020715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	228	865	5	ENST00000269305.4:c.261_312delinsGGGCCAGGA	p.Ala88GlyfsTer21	p.A88Gfs*21	ENST00000269305	NM_001126112.2	87	ccAGCCCCCTCCTGGCCCCTGTCATCTTCTGTCCCTTCCCAGAAAACCTACCAG/ccGGGCCAGGA																																													NEWRECORD																																		
BAP1	8314	MSKCC	GRCh37	3	52440372	52440372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	259	668	4	ENST00000460680.1:c.680G>T	p.Arg227Leu	p.R227L	ENST00000460680	NM_004656.3	227	cGc/cTc																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89390935	89390935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	100	580	0	ENST00000336596.2:c.1001C>T	p.Ser334Phe	p.S334F	ENST00000336596	NM_005233.5	334	tCt/tTt																																													NEWRECORD																																		
PLK2	10769	MSKCC	GRCh37	5	57754292	57754292	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	173	714	1	ENST00000274289.3:c.559A>G	p.Arg187Gly	p.R187G	ENST00000274289	NM_006622.3	187	Agg/Ggg																																													NEWRECORD																																		
JAK2	3717	MSKCC	GRCh37	9	5066677	5066677	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0020715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	82	718	0	ENST00000381652.3:c.1215-1G>A		p.X405_splice	ENST00000381652	NM_004972.3	405																																														NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0020736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	314	795	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																													NEWRECORD																																		
ELF3	1999	MSKCC	GRCh37	1	201982318	201982318	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140187152		P-0020736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1704	204	852	1	ENST00000359651.3:c.697C>T	p.Arg233Cys	p.R233C	ENST00000359651		233	Cgt/Tgt																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111469	8111469	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	406	930	0	ENST00000346208.3:c.956del	p.Asn319ThrfsTer36	p.N319Tfs*36	ENST00000346208		319	Aac/ac																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67070602	67070602	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	237	449	0	ENST00000412916.2:c.226G>T	p.Glu76Ter	p.E76*	ENST00000412916		76	Gaa/Taa																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151945496	151945497	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0020736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	682	1090	0	ENST00000262189.6:c.2022_2023del	p.Glu674AspfsTer30	p.E674Dfs*30	ENST00000262189	NM_170606.2	674	gaAAca/gaca																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67589642	67589642	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	64	442	0	ENST00000274335.5:c.1405G>T	p.Glu469Ter	p.E469*	ENST00000274335		469	Gaa/Taa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0020643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	117	1071	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123191766	123191766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	94	726	0	ENST00000218089.9:c.1355G>A	p.Gly452Glu	p.G452E	ENST00000218089	NM_001042749.1	452	gGa/gAa																																													NEWRECORD																																		
CSDE1	7812	MSKCC	GRCh37	1	115263314	115263314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	116	945	1	ENST00000438362.2:c.2036C>T	p.Pro679Leu	p.P679L	ENST00000438362	NM_001242891.1	679	cCa/cTa																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49441821	49441821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	118	812	1	ENST00000301067.7:c.4163G>A	p.Arg1388Gln	p.R1388Q	ENST00000301067	NM_003482.3	1388	cGg/cAg																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95557612	95557612	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	115	741	0	ENST00000343455.3:c.5455A>G	p.Ile1819Val	p.I1819V	ENST00000343455	NM_177438.2	1819	Att/Gtt																																													NEWRECORD																																		
PIK3C3	5289	MSKCC	GRCh37	18	39623740	39623740	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	89	735	0	ENST00000262039.4:c.2147G>C	p.Gly716Ala	p.G716A	ENST00000262039	NM_002647.2	716	gGg/gCg																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47702268	47702268	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	110	789	0	ENST00000233146.2:c.1864C>G	p.Pro622Ala	p.P622A	ENST00000233146	NM_000251.2	622	Cca/Gca																																													NEWRECORD																																		
KIT	3815	MSKCC	GRCh37	4	55594030	55594030	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	82	569	0	ENST00000288135.5:c.1816G>T	p.Ala606Ser	p.A606S	ENST00000288135	NM_000222.2	606	Gca/Tca																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187629739	187629739	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	84	908	1	ENST00000441802.2:c.1243del	p.Tyr415ThrfsTer9	p.Y415Tfs*9	ENST00000441802	NM_005245.3	415	Tac/ac																																													NEWRECORD																																		
DROSHA	29102	MSKCC	GRCh37	5	31529166	31529166	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0020643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	110	840	0	ENST00000344624.3:c.1A>G	p.Met1?	p.M1?	ENST00000344624		1	Atg/Gtg																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81359039	81359039	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	52	823	0	ENST00000222390.5:c.922G>T	p.Gly308Cys	p.G308C	ENST00000222390	NM_000601.4	308	Ggt/Tgt																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971053	21971054	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	71	870	0	ENST00000304494.5:c.304dup	p.Ala102GlyfsTer18	p.A102Gfs*18	ENST00000304494	NM_000077.4	102	gcg/gGcg																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411872	63411872	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	192	1610	1	ENST00000330258.3:c.1295G>T	p.Gly432Val	p.G432V	ENST00000330258	NM_152424.3	432	gGc/gTc																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70339327	70339328	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	CT			P-0020643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	83	618	0	ENST00000374080.3:c.204_204+1delinsCT		p.X68_splice	ENST00000374080		68																																														NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123200098	123200098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	92	911	0	ENST00000218089.9:c.2170G>A	p.Asp724Asn	p.D724N	ENST00000218089	NM_001042749.1	724	Gac/Aac																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123205060	123205060	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	94	818	1	ENST00000218089.9:c.2420G>T	p.Arg807Leu	p.R807L	ENST00000218089	NM_001042749.1	807	cGt/cTt																																													NEWRECORD																																		
FAM58A	92002	MSKCC	GRCh37	X	152861505	152861505	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	93	801	0	ENST00000406277.2:c.247G>T	p.Glu83Ter	p.E83*	ENST00000406277	NM_152274.4	83	Gag/Tag																																													NEWRECORD																																		
FGF3	2248	MSKCC	GRCh37	11	69625090	69625090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	51	662	0	ENST00000334134.2:c.703G>C	p.Glu235Gln	p.E235Q	ENST00000334134	NM_005247.2	235	Gag/Cag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579485	7579485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	132	973	2	ENST00000269305.4:c.202G>T	p.Glu68Ter	p.E68*	ENST00000269305	NM_001126112.2	68	Gag/Tag																																													NEWRECORD																																		
XPO1	7514	MSKCC	GRCh37	2	61713033	61713033	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	82	781	0	ENST00000401558.2:c.2378C>G	p.Pro793Arg	p.P793R	ENST00000401558	NM_003400.3	793	cCa/cGa																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47161850	47161851	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0020690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	131	713	3	ENST00000409792.3:c.4275_4276del	p.Lys1426SerfsTer2	p.K1426Sfs*2	ENST00000409792	NM_014159.6	1425	aaGAaa/aaaa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	765	722	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46246011	46246011	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	45	346	0	ENST00000334344.6:c.4106del	p.Gly1369ValfsTer4	p.G1369Vfs*4	ENST00000334344	NM_152641.2	1369	Ggt/gt																																													NEWRECORD																																		
RYBP	23429	MSKCC	GRCh37	3	72427699	72427699	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	68	439	2	ENST00000477973.2:c.789A>T	p.Glu264Val	p.E264V	ENST00000477973	NM_012234.5	264	gAa/gTa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	102	914	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11177096	11177096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	56	778	0	ENST00000361445.4:c.6981G>A	p.Met2327Ile	p.M2327I	ENST00000361445	NM_004958.3	2327	atG/atA																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	87	525	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	41	759	1	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	44	589	0	ENST00000269571.5:c.2305G>A	p.Asp769Asn	p.D769N	ENST00000269571		769	Gac/Aac																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114799803	114799803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	65	844	2	ENST00000543371.1:c.470C>T	p.Pro157Leu	p.P157L	ENST00000543371	NM_001198531.1	157	cCa/cTa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	46	939	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	103	961	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	116	1050	0	ENST00000269305.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000269305	NM_001126112.2	273	Cgt/Agt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106342	27106342	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	49	822	0	ENST00000324856.7:c.5953T>C	p.Ser1985Pro	p.S1985P	ENST00000324856	NM_006015.4	1985	Tcc/Ccc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5223299	5223299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	53	1126	0	ENST00000357368.4:c.2504G>A	p.Arg835His	p.R835H	ENST00000357368	NM_002850.3	835	cGc/cAc																																													NEWRECORD																																		
DAXX	1616	MSKCC	GRCh37	6	33289145	33289145	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	78	830	0	ENST00000374542.5:c.407C>G	p.Ala136Gly	p.A136G	ENST00000374542	NM_001141970.1	136	gCc/gGc																																													NEWRECORD																																		
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	41	733	2	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0020648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	95	680	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	44	330	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	78	1004	0	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0020695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	125	738	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																													NEWRECORD																																		
TP53BP1	7158	MSKCC	GRCh37	15	43700201	43700201	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	76	841	0	ENST00000382044.4:c.5686A>T	p.Ile1896Phe	p.I1896F	ENST00000382044	NM_001141980.1	1896	Atc/Ttc																																													NEWRECORD																																		
CYLD	1540	MSKCC	GRCh37	16	50810162	50810162	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	204	888	0	ENST00000398568.2:c.986C>G	p.Ser329Cys	p.S329C	ENST00000398568	NM_001042412.1	329	tCc/tGc																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38950751	38950751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	96	610	0	ENST00000357387.3:c.3199G>A	p.Asp1067Asn	p.D1067N	ENST00000357387	NM_152756.3	1067	Gat/Aat																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	54	674	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	547	924	2	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0020678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	2352	675	6	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913324		P-0020543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	28	1041	0	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0020543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	37	936	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	94128963	94128963	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0020543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	28	614	0	ENST00000369303.4:c.97G>T	p.Val33Leu	p.V33L	ENST00000369303	NM_004440.3	33	Gta/Tta																																													NEWRECORD																																		
MCL1	4170	MSKCC	GRCh37	1	150551324	150551324	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	35	1304	1	ENST00000369026.2:c.683T>A	p.Phe228Tyr	p.F228Y	ENST00000369026	NM_021960.4	228	tTc/tAc																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28963999	28963999	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	17	582	0	ENST00000282397.4:c.1903G>T	p.Ala635Ser	p.A635S	ENST00000282397	NM_002019.4	635	Gcc/Tcc																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89357126	89357129	+	frameshift_variant	Frame_Shift_Del	DEL	TCTC	TCTC	-			P-0020543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	34	1089	0	ENST00000301030.4:c.505_508del	p.Glu169ProfsTer58	p.E169Pfs*58	ENST00000301030	NM_001256183.1	169	GAGAcc/cc																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16024479	16024479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	23	658	0	ENST00000268712.3:c.1739G>T	p.Arg580Leu	p.R580L	ENST00000268712	NM_006311.3	580	cGc/cTc																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29592321	29592321	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	22	814	0	ENST00000358273.4:c.4799A>G	p.Lys1600Arg	p.K1600R	ENST00000358273	NM_001042492.2	1600	aAa/aGa																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10602617	10602617	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	23	1107	0	ENST00000171111.5:c.961del	p.Ala321ArgfsTer7	p.A321Rfs*7	ENST00000171111	NM_203500.1	321	Gcg/cg																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176637891	176637891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	35	834	0	ENST00000439151.2:c.2491G>T	p.Gly831Trp	p.G831W	ENST00000439151	NM_022455.4	831	Ggg/Tgg																																													NEWRECORD																																		
TNFAIP3	7128	MSKCC	GRCh37	6	138200081	138200081	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	31	625	0	ENST00000237289.4:c.1499A>G	p.Asn500Ser	p.N500S	ENST00000237289	NM_001270507.1	500	aAc/aGc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	1028	745	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913385		P-0020763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	310	557	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0020763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	264	614	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																														NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2977591	2977591	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	359	841	0	ENST00000396946.4:c.1093A>G	p.Met365Val	p.M365V	ENST00000396946	NM_032415.4	365	Atg/Gtg																																													NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0020502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	114	815	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106509436	106509436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	39	796	1	ENST00000359195.3:c.1430G>A	p.Arg477His	p.R477H	ENST00000359195	NM_002649.2	477	cGt/cAt																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67063344	67063344	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	71	834	0	ENST00000412916.2:c.34T>A	p.Phe12Ile	p.F12I	ENST00000412916		12	Ttc/Atc																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16062088	16062088	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	38	709	0	ENST00000268712.3:c.718T>G	p.Tyr240Asp	p.Y240D	ENST00000268712	NM_006311.3	240	Tat/Gat																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	29	521	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	9	548	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																													NEWRECORD																																		
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913500		P-0020734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	8	525	1	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt																																													NEWRECORD																																		
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0020734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	78	992	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	105	661	1	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																													NEWRECORD																																		
MSI1	4440	MSKCC	GRCh37	12	120795681	120795681	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	87	598	0	ENST00000257552.2:c.472G>C	p.Glu158Gln	p.E158Q	ENST00000257552	NM_002442.3	158	Gag/Cag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	137	1149	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98270593	98270595	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0020497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	11	154	0	ENST00000331920.6:c.49_51delGGC	p.Gly17del	p.G17del	ENST00000331920	NM_000264.3	17	GGC/-																																													NEWRECORD																																		
ELF3	1999	MSKCC	GRCh37	1	201984428	201984428	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	137	1064	0	ENST00000359651.3:c.1093G>T	p.Glu365Ter	p.E365*	ENST00000359651		365	Gag/Tag																																													NEWRECORD																																		
SUFU	51684	MSKCC	GRCh37	10	104352340	104352340	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0020497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	88	816	0	ENST00000369902.3:c.456G>C	p.Glu152Asp	p.E152D	ENST00000369902	NM_016169.3	152	gaG/gaC																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42003191	42003191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	268	1138	1	ENST00000219905.7:c.2728C>T	p.Arg910Ter	p.R910*	ENST00000219905	NM_001164273.1	910	Cga/Tga																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42026720	42026720	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0020497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	111	958	2	ENST00000219905.7:c.3844G>T	p.Glu1282Ter	p.E1282*	ENST00000219905	NM_001164273.1	1282	Gaa/Taa																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1220666	1220670	+	frameshift_variant	Frame_Shift_Del	DEL	GGACA	GGACA	-			P-0020497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1544	209	1878	0	ENST00000326873.7:c.684_688del	p.Asp229LeufsTer35	p.D229Lfs*35	ENST00000326873	NM_000455.4	228	ctGGACAcc/ctcc																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10602922	10602922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1412	232	1658	2	ENST00000171111.5:c.656A>T	p.Glu219Val	p.E219V	ENST00000171111	NM_203500.1	219	gAg/gTg																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11144123	11144123	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1172	187	1564	0	ENST00000344626.4:c.3704A>T	p.Asp1235Val	p.D1235V	ENST00000344626	NM_003072.3	1235	gAc/gTc																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152420000	152420000	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs146924427		P-0020497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	112	1023	0	ENST00000206249.3:c.1687A>G	p.Thr563Ala	p.T563A	ENST00000206249	NM_000125.3	563	Acg/Gcg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0020651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	1003	979	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0020651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	189	862	0	ENST00000269305.4:c.560-1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																														NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103514475	103514475	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	43	332	0	ENST00000355739.4:c.976T>C	p.Cys326Arg	p.C326R	ENST00000355739	NM_000123.3	326	Tgt/Cgt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0020716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	141	870	1	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0020716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	207	1038	1	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89690819	89690820	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0020716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	111	708	0	ENST00000371953.3:c.227_228del	p.Tyr76Ter	p.Y76*	ENST00000371953	NM_000314.4	76	TAt/t																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30713853	30713853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	142	914	2	ENST00000359013.4:c.1253G>A	p.Cys418Tyr	p.C418Y	ENST00000359013	NM_001024847.2	418	tGc/tAc																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29683551	29683557	+	frameshift_variant	Frame_Shift_Del	DEL	CACAACA	CACAACA	-			P-0020716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	81	587	0	ENST00000358273.4:c.7690_7696del	p.Thr2564ProfsTer4	p.T2564Pfs*4	ENST00000358273	NM_001042492.2	2563	atCACAACA/at																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0020551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	217	694	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0020551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	50	821	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																													NEWRECORD																																		
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0020551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	51	569	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68842656	68842657	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0020551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	276	929	0	ENST00000261769.5:c.597_598dup	p.Pro200HisfsTer16	p.P200Hfs*16	ENST00000261769	NM_004360.3	198	gac/gACac																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49433689	49433689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	69	1239	1	ENST00000301067.7:c.7864G>A	p.Asp2622Asn	p.D2622N	ENST00000301067	NM_003482.3	2622	Gac/Aac																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115111999	115112000	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0020551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	132	1146	0	ENST00000257566.3:c.1740_1741del	p.Phe580LeufsTer111	p.F580Lfs*111	ENST00000257566	NM_016569.3	580	ttCCac/ttac																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061137	38061144	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCCCGC	GCCCCCGC	-			P-0020551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	41	155	0	ENST00000250448.2:c.845_852del	p.Ser282LysfsTer8	p.S282Kfs*8	ENST00000250448	NM_004496.3	282	aGCGGGGGC/a																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3820919	3820922	+	frameshift_variant	Frame_Shift_Del	DEL	AGGT	AGGT	-			P-0020551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	233	929	0	ENST00000262367.5:c.2529_2532del	p.Pro844AlafsTer4	p.P844Afs*4	ENST00000262367	NM_004380.2	843	ctACCT/ct																																													NEWRECORD																																		
UPF1	5976	MSKCC	GRCh37	19	18971215	18971215	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	68	901	0	ENST00000262803.5:c.2268G>C	p.Glu756Asp	p.E756D	ENST00000262803	NM_002911.3	756	gaG/gaC																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227663222	227663222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	43	835	0	ENST00000305123.5:c.233C>G	p.Ser78Cys	p.S78C	ENST00000305123	NM_005544.2	78	tCc/tGc																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151860822	151860822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	29	495	0	ENST00000262189.6:c.9840G>A	p.Met3280Ile	p.M3280I	ENST00000262189	NM_170606.2	3280	atG/atA																																													NEWRECORD																																		
GATA1	2623	MSKCC	GRCh37	X	48650610	48650610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	43	807	1	ENST00000376670.3:c.580C>T	p.Leu194Phe	p.L194F	ENST00000376670	NM_002049.3	194	Ctc/Ttc																																													NEWRECORD																																		
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	109	771	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106519	27106523	+	frameshift_variant	Frame_Shift_Del	DEL	AACAA	AACAA	-			P-0020704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	107	1034	0	ENST00000324856.7:c.6131_6135del	p.Asn2044SerfsTer53	p.N2044Sfs*53	ENST00000324856	NM_006015.4	2044	AACAAa/a																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44922894	44922915	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAAGTACAGACACTATTTTG	GGGAAGTACAGACACTATTTTG	-			P-0020704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	78	334	0	ENST00000377967.4:c.1755_1776del	p.Gly586Ter	p.G586*	ENST00000377967	NM_021140.2	585	ctGGGAAGTACAGACACTATTTTG/ct																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578179	7578179	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0020570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	157	1059	1	ENST00000269305.4:c.670G>T	p.Glu224Ter	p.E224*	ENST00000269305	NM_001126112.2	224	Gag/Tag																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133250211	133250211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	133	1039	1	ENST00000320574.5:c.1309G>A	p.Val437Met	p.V437M	ENST00000320574	NM_006231.2	437	Gtg/Atg																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1220703	1220703	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	143	1063	0	ENST00000326873.7:c.721G>C	p.Ala241Pro	p.A241P	ENST00000326873	NM_000455.4	241	Gct/Cct																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	432362	432362	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	32	319	1	ENST00000399788.2:c.2161C>A	p.Pro721Thr	p.P721T	ENST00000399788	NM_001042603.1	721	Cca/Aca																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49425771	49425771	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	103	823	0	ENST00000301067.7:c.12717G>T	p.Gln4239His	p.Q4239H	ENST00000301067	NM_003482.3	4239	caG/caT																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2105513	2105513	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	121	746	0	ENST00000219476.3:c.592A>T	p.Met198Leu	p.M198L	ENST00000219476	NM_000548.3	198	Atg/Ttg																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41306800	41306800	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	50	306	0	ENST00000373198.4:c.860-1G>A		p.X287_splice	ENST00000373198	NM_133170.3	287																																														NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110436297	110436302	+	inframe_deletion	In_Frame_Del	DEL	CGGCGG	CGGCGG	-			P-0020693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	71	270	0	ENST00000375856.3:c.2099_2104del	p.Ala700_Ala701del	p.A700_A701del	ENST00000375856	NM_003749.2	700	gCCGCCGtg/gtg																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70117820	70117821	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCTCCT			P-0020693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	51	710	0	ENST00000245479.2:c.294_295insTGGCTCC	p.Ser99TrpfsTer155	p.S99Wfs*155	ENST00000245479	NM_000346.3	96	-/GGCTCCT																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142274778	142274780	+	missense_variant	Missense_Mutation	ONP	GAA	GAA	TTT			P-0020693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	36	759	0	ENST00000350721.4:c.2280_2282delinsAAA	p.Ser761Asn	p.S761N	ENST00000350721	NM_001184.3	760	gcTTCt/gcAAAt																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0020663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	30	283	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																														NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68847300	68847301	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	61	721	0	ENST00000261769.5:c.1223dup	p.Trp409ValfsTer10	p.W409Vfs*10	ENST00000261769	NM_004360.3	408	gcg/gCcg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	226	995	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	62	656	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2983911	2983911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	268	1204	1	ENST00000396946.4:c.619C>T	p.Arg207Cys	p.R207C	ENST00000396946	NM_032415.4	207	Cgc/Tgc																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43601893	43601893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	170	901	2	ENST00000355710.3:c.937C>T	p.Arg313Trp	p.R313W	ENST00000355710	NM_020975.4	313	Cgg/Tgg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0020723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	288	714	0	ENST00000269305.4:c.559+2T>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																														NEWRECORD																																		
KMT2A	4297	MSKCC	GRCh37	11	118380795	118380795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	93	710	3	ENST00000534358.1:c.11033G>A	p.Ser3678Asn	p.S3678N	ENST00000534358	NM_005933.3	3678	aGt/aAt																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88576096	88576096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	122	1010	0	ENST00000360948.2:c.1577C>T	p.Pro526Leu	p.P526L	ENST00000360948	NM_001012338.2	526	cCg/cTg																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128829165	128829165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	91	91	0	ENST00000249373.3:c.173C>T	p.Pro58Leu	p.P58L	ENST00000249373	NM_005631.4	58	cCg/cTg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913288		P-0020575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	15	686	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111543	8111545	+	inframe_deletion	In_Frame_Del	DEL	CTA	CTA	-			P-0020545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	109	1052	0	ENST00000346208.3:c.1033_1035del	p.Tyr345del	p.Y345del	ENST00000346208		343	ctCTAc/ctc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115865	8115866	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	162	1249	0	ENST00000346208.3:c.1213dup	p.His405ProfsTer102	p.H405Pfs*102	ENST00000346208		404	agc/agCc																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123176494	123176494	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0020545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	78	582	0	ENST00000218089.9:c.461A>T	p.Glu154Val	p.E154V	ENST00000218089	NM_001042749.1	154	gAg/gTg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	240	1396	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	168	999	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	28	402	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0020500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	160	640	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114903763	114903763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	314	969	0	ENST00000543371.1:c.767C>T	p.Pro256Leu	p.P256L	ENST00000543371	NM_001198531.1	256	cCg/cTg																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64577427	64577433	+	frameshift_variant	Frame_Shift_Del	DEL	CGGTTGA	CGGTTGA	-			P-0020684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	358	928	0	ENST00000337652.1:c.149_155del	p.Val50AlafsTer67	p.V50Afs*67	ENST00000337652	NM_130803.2	50	gTCAACCGc/gc																																													NEWRECORD																																		
MRE11A	4361	MSKCC	GRCh37	11	94219152	94219152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	413	858	0	ENST00000323929.3:c.252G>A	p.Met84Ile	p.M84I	ENST00000323929	NM_005591.3	84	atG/atA																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47158197	47158197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	378	920	1	ENST00000409792.3:c.4502G>A	p.Cys1501Tyr	p.C1501Y	ENST00000409792	NM_014159.6	1501	tGt/tAt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	276	962	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0020578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	141	959	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41268766	41268766	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	111	787	2	ENST00000349496.5:c.1004A>T	p.Lys335Ile	p.K335I	ENST00000349496	NM_001904.3	335	aAa/aTa																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212652855	212652856	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0020578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	35	695	2	ENST00000342788.4:c.450_451delinsAA	p.Asp150_Gln151delinsGluLys	p.D150_Q151delinsEK	ENST00000342788	NM_005235.2	150	gaCCag/gaAAag																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52668785	52668785	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	92	695	0	ENST00000394830.3:c.1134del	p.Phe379LeufsTer25	p.F379Lfs*25	ENST00000394830	NM_018313.4	378	tcC/tc																																													NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35876320	35876320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	84	752	1	ENST00000303115.3:c.1112C>A	p.Ala371Asp	p.A371D	ENST00000303115	NM_002185.3	371	gCt/gAt																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86665686	86665686	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	86	705	0	ENST00000274376.6:c.1667A>G	p.Tyr556Cys	p.Y556C	ENST00000274376	NM_002890.2	556	tAc/tGc																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56448296	56448297	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	102	967	0	ENST00000407977.2:c.350_351insA	p.Cys119LeufsTer6	p.C119Lfs*6	ENST00000407977		117	cgc/cgAc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	661	1015	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0020526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	559	1120	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0020529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1480	91	1708	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29528106	29528106	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	38	803	0	ENST00000358273.4:c.1114G>C	p.Asp372His	p.D372H	ENST00000358273	NM_001042492.2	372	Gat/Cat																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115750	8115750	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	207	952	2	ENST00000346208.3:c.1096C>T	p.Arg366Ter	p.R366*	ENST00000346208		366	Cga/Tga																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68772218	68772219	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCCT			P-0020456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	234	888	0	ENST00000261769.5:c.67_68insTCCT	p.Gln23LeufsTer12	p.Q23Lfs*12	ENST00000261769	NM_004360.3	23	cag/cTCCTag																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57485813	57485813	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	177	535	0	ENST00000371085.3:c.1114A>T	p.Ile372Phe	p.I372F	ENST00000371085	NM_000516.4	372	Atc/Ttc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0020521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	863	1002	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	88	1302	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28886179	28886181	+	inframe_deletion	In_Frame_Del	DEL	GCA	GCA	-			P-0020521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	87	1132	0	ENST00000282397.4:c.3441_3443del	p.Phe1147_Ala1148delinsLeu	p.F1147_A1148delinsL	ENST00000282397	NM_002019.4	1147	ttTGCa/tta																																													NEWRECORD																																		
NKX2-1	7080	MSKCC	GRCh37	14	36988359	36988359	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0020521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	87	905	0	ENST00000354822.5:c.294C>G	p.Tyr98Ter	p.Y98*	ENST00000354822	NM_001079668.2	98	taC/taG																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212587242	212587242	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	76	574	0	ENST00000342788.4:c.759T>A	p.Asn253Lys	p.N253K	ENST00000342788	NM_005235.2	253	aaT/aaA																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	279	858	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0020461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	389	1017	1	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	262	694	1	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	502	617	3	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72830132	72830132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	618	794	1	ENST00000268489.5:c.6449C>A	p.Thr2150Asn	p.T2150N	ENST00000268489	NM_006885.3	2150	aCc/aAc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112170699	112170700	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0020461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	247	742	0	ENST00000257430.4:c.1795_1796del	p.Cys599HisfsTer2	p.C599Hfs*2	ENST00000257430	NM_000038.5	599	TGc/c																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0020462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	438	880	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41243006	41243013	+	frameshift_variant	Frame_Shift_Del	DEL	TTCAGAGA	TTCAGAGA	-			P-0020462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	678	746	0	ENST00000357654.3:c.4133_4140del	p.Val1378GlyfsTer10	p.V1378Gfs*10	ENST00000357654	NM_007294.3	1378	gTCTCTGAA/g																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48027386	48027386	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	407	508	0	ENST00000234420.5:c.2264A>C	p.Glu755Ala	p.E755A	ENST00000234420	NM_000179.2	755	gAa/gCa																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70339555	70339635	+	inframe_deletion	In_Frame_Del	DEL	GCATTATTGCAGAGAAATTACGTTGTAATACCCTTCCTGACACTGGTCGCAGGAAGCCCCAAGTGAACCAGAAGGATAACT	GCATTATTGCAGAGAAATTACGTTGTAATACCCTTCCTGACACTGGTCGCAGGAAGCCCCAAGTGAACCAGAAGGATAACT	-			P-0020462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	288	836	2	ENST00000374080.3:c.224_304del	p.Ser75_Phe102delinsIle	p.S75_F102delinsI	ENST00000374080		75	aGCATTATTGCAGAGAAATTACGTTGTAATACCCTTCCTGACACTGGTCGCAGGAAGCCCCAAGTGAACCAGAAGGATAACTtc/atc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	101	819	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
NKX2-1	7080	MSKCC	GRCh37	14	36986986	36986986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	58	804	1	ENST00000354822.5:c.703G>T	p.Val235Phe	p.V235F	ENST00000354822	NM_001079668.2	235	Gtc/Ttc																																													NEWRECORD																																		
NKX2-1	7080	MSKCC	GRCh37	14	36988508	36988511	+	frameshift_variant	Frame_Shift_Del	DEL	GACT	GACT	-			P-0020557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	98	1064	0	ENST00000354822.5:c.142_145del	p.Ser48ProfsTer52	p.S48Pfs*52	ENST00000354822	NM_001079668.2	48	AGTCcc/cc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0020555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	336	792	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																													NEWRECORD																																		
RAD21	5885	MSKCC	GRCh37	8	117875470	117875470	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	49	698	1	ENST00000297338.2:c.173A>T	p.His58Leu	p.H58L	ENST00000297338	NM_006265.2	58	cAt/cTt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0020559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	212	822	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198266605	198266605	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	121	542	1	ENST00000335508.6:c.2231C>A	p.Ala744Asp	p.A744D	ENST00000335508	NM_012433.2	744	gCt/gAt																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72821755	72821761	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCCGC	AGCCCGC	-			P-0020559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	75	708	0	ENST00000268489.5:c.10414_10420del	p.Ala3472SerfsTer11	p.A3472Sfs*11	ENST00000268489	NM_006885.3	3472	GCGGGCTtc/tc																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56183211	56183211	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	133	539	0	ENST00000399503.3:c.4121A>G	p.Asn1374Ser	p.N1374S	ENST00000399503	NM_005921.1	1374	aAt/aGt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0020553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	129	995	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																													NEWRECORD																																		
EED	8726	MSKCC	GRCh37	11	85989562	85989562	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	74	472	0	ENST00000263360.6:c.1321C>T	p.Arg441Ter	p.R441*	ENST00000263360	NM_003797.3	441	Cga/Tga																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0020484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	135	764	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0020484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	190	951	0	ENST00000269305.4:c.497C>G	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tGa																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162724433	162724433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	35	608	1	ENST00000367921.3:c.205G>T	p.Asp69Tyr	p.D69Y	ENST00000367921	NM_006182.2	69	Gat/Tat																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18658289	18658289	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	48	797	0	ENST00000266497.5:c.3094T>G	p.Cys1032Gly	p.C1032G	ENST00000266497		1032	Tgt/Ggt																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57485061	57485061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	32	547	0	ENST00000371085.3:c.895G>A	p.Glu299Lys	p.E299K	ENST00000371085	NM_000516.4	299	Gag/Aag																																													NEWRECORD																																		
TAP2	6891	MSKCC	GRCh37	6	32800145	32800145	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	74	576	0	ENST00000374899.4:c.1237A>G	p.Met413Val	p.M413V	ENST00000374899	NM_018833.2	413	Atg/Gtg																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47041429	47041429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	42	900	0	ENST00000329236.7:c.1539C>A	p.Asp513Glu	p.D513E	ENST00000329236	NM_001204466.1	513	gaC/gaA																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0020458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	39	918	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	51	946	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1272	90	1231	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	46	637	1	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115118950	115118950	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	22	363	0	ENST00000257566.3:c.391C>T	p.Arg131Ter	p.R131*	ENST00000257566	NM_016569.3	131	Cga/Tga																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95572534	95572534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	29	444	0	ENST00000343455.3:c.2831G>A	p.Arg944Gln	p.R944Q	ENST00000343455	NM_177438.2	944	cGa/cAa																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47164577	47164577	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	30	538	0	ENST00000409792.3:c.1549G>T	p.Glu517Ter	p.E517*	ENST00000409792	NM_014159.6	517	Gaa/Taa																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	62	1144	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs879255270		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	54	812	1	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175930	112175930	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	22	359	0	ENST00000257430.4:c.4639G>T	p.Glu1547Ter	p.E1547*	ENST00000257430	NM_000038.5	1547	Gaa/Taa																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108098419	108098419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	39	606	1	ENST00000278616.4:c.68G>A	p.Arg23Gln	p.R23Q	ENST00000278616	NM_000051.3	23	cGa/cAa																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106508127	106508127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	27	365	0	ENST00000359195.3:c.121G>A	p.Glu41Lys	p.E41K	ENST00000359195	NM_002649.2	41	Gag/Aag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578552	7578552	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1314	70	1247	0	ENST00000269305.4:c.378C>A	p.Tyr126Ter	p.Y126*	ENST00000269305	NM_001126112.2	126	taC/taA																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227662211	227662211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	63	1015	0	ENST00000305123.5:c.1244C>T	p.Ser415Leu	p.S415L	ENST00000305123	NM_005544.2	415	tCg/tTg																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71026984	71026984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	55	706	0	ENST00000318789.4:c.1343C>T	p.Ser448Leu	p.S448L	ENST00000318789	NM_032682.5	448	tCg/tTg																																													NEWRECORD																																		
PGR	5241	MSKCC	GRCh37	11	100920785	100920785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	38	755	0	ENST00000325455.5:c.2363G>A	p.Arg788Gln	p.R788Q	ENST00000325455	NM_001202474.3	788	cGg/cAg																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47702266	47702266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	52	892	3	ENST00000233146.2:c.1862G>A	p.Arg621Gln	p.R621Q	ENST00000233146	NM_000251.2	621	cGa/cAa																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519945		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	55	731	2	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57861838	57861838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	71	1024	2	ENST00000228682.2:c.1139G>A	p.Arg380Gln	p.R380Q	ENST00000228682	NM_005269.2	380	cGa/cAa																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	45	738	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106156829	106156829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	51	744	0	ENST00000380013.4:c.1730C>T	p.Ser577Phe	p.S577F	ENST00000380013	NM_001127208.2	577	tCc/tTc																																													NEWRECORD																																		
GPS2	2874	MSKCC	GRCh37	17	7216091	7216091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	52	528	0	ENST00000380728.2:c.968G>A	p.Arg323Gln	p.R323Q	ENST00000380728		323	cGa/cAa																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	31	550	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106509045	106509045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	63	816	0	ENST00000359195.3:c.1039G>A	p.Glu347Lys	p.E347K	ENST00000359195	NM_002649.2	347	Gag/Aag																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108201008	108201008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	54	635	0	ENST00000278616.4:c.7375C>T	p.Arg2459Cys	p.R2459C	ENST00000278616	NM_000051.3	2459	Cgt/Tgt																																													NEWRECORD																																		
H3F3C	440093	MSKCC	GRCh37	12	31944947	31944947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	49	642	0	ENST00000340398.3:c.154C>T	p.Arg52Cys	p.R52C	ENST00000340398	NM_001013699.2	52	Cgt/Tgt																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225362541	225362541	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs767240461		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	55	769	0	ENST00000264414.4:c.1636C>T	p.Arg546Ter	p.R546*	ENST00000264414	NM_003590.4	546	Cga/Tga																																													NEWRECORD																																		
HIST3H3	8290	MSKCC	GRCh37	1	228612879	228612879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	64	927	0	ENST00000366696.1:c.148C>T	p.Arg50Cys	p.R50C	ENST00000366696	NM_003493.2	50	Cgc/Tgc																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73333960	73333960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	60	979	1	ENST00000377767.4:c.2850G>T	p.Lys950Asn	p.K950N	ENST00000377767	NM_014953.3	950	aaG/aaT																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67591086	67591086	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	24	429	1	ENST00000274335.5:c.1679A>G	p.Asp560Gly	p.D560G	ENST00000274335		560	gAc/gGc																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25457192	25457192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	60	927	2	ENST00000264709.3:c.2695C>T	p.Arg899Cys	p.R899C	ENST00000264709	NM_175629.2	899	Cgc/Tgc																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81350062	81350062	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs759145490		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	44	631	1	ENST00000222390.5:c.1270C>T	p.Arg424Cys	p.R424C	ENST00000222390	NM_000601.4	424	Cgt/Tgt																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103518106	103518106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759972289		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	79	474	0	ENST00000355739.4:c.2044G>A	p.Glu682Lys	p.E682K	ENST00000355739	NM_000123.3	682	Gaa/Aaa																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72992667	72992667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	41	680	0	ENST00000268489.5:c.1378G>A	p.Glu460Lys	p.E460K	ENST00000268489	NM_006885.3	460	Gaa/Aaa																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135797217	135797217	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	24	437	0	ENST00000298552.3:c.652G>T	p.Glu218Ter	p.E218*	ENST00000298552	NM_001162426.1	218	Gaa/Taa																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178943780	178943780	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	49	711	0	ENST00000263967.3:c.2447T>G	p.Ile816Ser	p.I816S	ENST00000263967	NM_006218.2	816	aTt/aGt																																													NEWRECORD																																		
ETV6	2120	MSKCC	GRCh37	12	11905514	11905514	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	34	411	0	ENST00000396373.4:c.163+1G>A		p.X55_splice	ENST00000396373	NM_001987.4	55																																														NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143159157	143159157	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	28	541	0	ENST00000262992.4:c.696G>T	p.Lys232Asn	p.K232N	ENST00000262992	NM_001101669.1	232	aaG/aaT																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143159098	143159098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	42	830	1	ENST00000262992.4:c.755G>A	p.Arg252Gln	p.R252Q	ENST00000262992	NM_001101669.1	252	cGa/cAa																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106509138	106509138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	75	814	4	ENST00000359195.3:c.1132G>A	p.Asp378Asn	p.D378N	ENST00000359195	NM_002649.2	378	Gac/Aac																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56176999	56176999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	53	726	2	ENST00000399503.3:c.2269C>T	p.Arg757Cys	p.R757C	ENST00000399503	NM_005921.1	757	Cgc/Tgc																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103527931	103527931	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs4150388		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	109	532	0	ENST00000355739.4:c.3239G>A	p.Gly1080Glu	p.G1080E	ENST00000355739	NM_000123.3	1080	gGa/gAa																																													NEWRECORD																																		
WWTR1	25937	MSKCC	GRCh37	3	149260151	149260151	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	48	744	1	ENST00000360632.3:c.742C>T	p.Arg248Ter	p.R248*	ENST00000360632	NM_015472.4	248	Cga/Tga																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49437701	49437701	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1266	67	1202	4	ENST00000301067.7:c.5269C>T	p.Arg1757Ter	p.R1757*	ENST00000301067	NM_003482.3	1757	Cga/Tga																																													NEWRECORD																																		
MYCN	4613	MSKCC	GRCh37	2	16085971	16085971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	49	783	2	ENST00000281043.3:c.1147C>T	p.Arg383Cys	p.R383C	ENST00000281043	NM_005378.4	383	Cgc/Tgc																																													NEWRECORD																																		
PIK3CD	5293	MSKCC	GRCh37	1	9776674	9776674	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	73	1055	1	ENST00000377346.4:c.777C>A	p.Phe259Leu	p.F259L	ENST00000377346	NM_005026.3	259	ttC/ttA																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16257495	16257495	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	49	593	0	ENST00000375759.3:c.4760T>G	p.Phe1587Cys	p.F1587C	ENST00000375759	NM_015001.2	1587	tTt/tGt																																													NEWRECORD																																		
CSF3R	1441	MSKCC	GRCh37	1	36933246	36933246	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144754091		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	59	959	4	ENST00000361632.4:c.1871C>T	p.Ser624Leu	p.S624L	ENST00000361632		624	tCg/tTg																																													NEWRECORD																																		
MUTYH	4595	MSKCC	GRCh37	1	45795028	45795028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	59	965	2	ENST00000372115.3:c.1558C>T	p.Arg520Trp	p.R520W	ENST00000372115	NM_001048171.1	520	Cgg/Tgg																																													NEWRECORD																																		
RAD54L	8438	MSKCC	GRCh37	1	46725722	46725722	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	55	811	0	ENST00000371975.4:c.358C>A	p.Leu120Met	p.L120M	ENST00000371975	NM_003579.3	120	Ctg/Atg																																													NEWRECORD																																		
CDKN2C	1031	MSKCC	GRCh37	1	51439711	51439711	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	44	482	0	ENST00000262662.1:c.276T>G	p.Phe92Leu	p.F92L	ENST00000262662		92	ttT/ttG																																													NEWRECORD																																		
CSDE1	7812	MSKCC	GRCh37	1	115263336	115263336	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	60	903	0	ENST00000438362.2:c.2014G>A	p.Asp672Asn	p.D672N	ENST00000438362	NM_001242891.1	672	Gat/Aat																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70406000	70406000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	65	918	2	ENST00000373644.4:c.3514G>T	p.Asp1172Tyr	p.D1172Y	ENST00000373644	NM_030625.2	1172	Gat/Tat																																													NEWRECORD																																		
LMO1	4004	MSKCC	GRCh37	11	8251854	8251854	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	51	864	0	ENST00000335790.3:c.223C>T	p.Arg75Ter	p.R75*	ENST00000335790	NM_002315.2	75	Cga/Tga																																													NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64129419	64129419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	102	1122	2	ENST00000334205.4:c.851G>A	p.Arg284Gln	p.R284Q	ENST00000334205	NM_003942.2	284	cGa/cAa																																													NEWRECORD																																		
SESN3	143686	MSKCC	GRCh37	11	94918560	94918560	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	51	996	0	ENST00000536441.1:c.622T>G	p.Phe208Val	p.F208V	ENST00000536441	NM_144665.3	208	Ttt/Gtt																																													NEWRECORD																																		
PGR	5241	MSKCC	GRCh37	11	100912699	100912699	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	47	771	0	ENST00000325455.5:c.2623A>C	p.Lys875Gln	p.K875Q	ENST00000325455	NM_001202474.3	875	Aaa/Caa																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108203577	108203577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	37	676	0	ENST00000278616.4:c.7877C>T	p.Ala2626Val	p.A2626V	ENST00000278616	NM_000051.3	2626	gCt/gTt																																													NEWRECORD																																		
KMT2A	4297	MSKCC	GRCh37	11	118352474	118352474	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	32	639	0	ENST00000534358.1:c.3679G>T	p.Asp1227Tyr	p.D1227Y	ENST00000534358	NM_005933.3	1227	Gac/Tac																																													NEWRECORD																																		
KMT2A	4297	MSKCC	GRCh37	11	118374150	118374150	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	38	617	0	ENST00000534358.1:c.7543T>G	p.Leu2515Val	p.L2515V	ENST00000534358	NM_005933.3	2515	Tta/Gta																																													NEWRECORD																																		
CHEK1	1111	MSKCC	GRCh37	11	125514077	125514077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	64	954	0	ENST00000428830.2:c.1015G>A	p.Val339Ile	p.V339I	ENST00000428830	NM_001114121.2	339	Gta/Ata																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	438161	438161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	51	699	1	ENST00000399788.2:c.1808G>A	p.Arg603Gln	p.R603Q	ENST00000399788	NM_001042603.1	603	cGa/cAa																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	475203	475203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1170	66	1140	1	ENST00000399788.2:c.434G>A	p.Arg145His	p.R145H	ENST00000399788	NM_001042603.1	145	cGc/cAc																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	495135	495135	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	42	643	0	ENST00000399788.2:c.171G>A	p.Trp57Ter	p.W57*	ENST00000399788	NM_001042603.1	57	tgG/tgA																																													NEWRECORD																																		
CCND2	894	MSKCC	GRCh37	12	4385180	4385180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	40	675	0	ENST00000261254.3:c.205G>A	p.Glu69Lys	p.E69K	ENST00000261254	NM_001759.3	69	Gaa/Aaa																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18715741	18715741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	38	585	0	ENST00000266497.5:c.3572C>T	p.Thr1191Ile	p.T1191I	ENST00000266497		1191	aCt/aTt																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46215235	46215235	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	26	532	0	ENST00000334344.6:c.670G>T	p.Glu224Ter	p.E224*	ENST00000334344	NM_152641.2	224	Gaa/Taa																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57865213	57865213	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1228	76	1120	0	ENST00000228682.2:c.2690T>G	p.Leu897Arg	p.L897R	ENST00000228682	NM_005269.2	897	cTt/cGt																																													NEWRECORD																																		
LATS2	26524	MSKCC	GRCh37	13	21620051	21620051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1175	78	1026	6	ENST00000382592.4:c.115G>A	p.Ala39Thr	p.A39T	ENST00000382592	NM_014572.2	39	Gca/Aca																																													NEWRECORD																																		
CDK8	1024	MSKCC	GRCh37	13	26959447	26959447	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	147	775	0	ENST00000381527.3:c.614T>G	p.Leu205Arg	p.L205R	ENST00000381527	NM_001260.1	205	cTt/cGt																																													NEWRECORD																																		
FOXO1	2308	MSKCC	GRCh37	13	41134681	41134681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	107	661	0	ENST00000379561.5:c.947G>A	p.Arg316Gln	p.R316Q	ENST00000379561	NM_002015.3	316	cGa/cAa																																													NEWRECORD																																		
PRKD1	5587	MSKCC	GRCh37	14	30093357	30093357	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	40	850	2	ENST00000331968.5:c.1905+1G>A		p.X635_splice	ENST00000331968	NM_002742.2	635																																														NEWRECORD																																		
NKX2-1	7080	MSKCC	GRCh37	14	36986833	36986833	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	50	565	0	ENST00000354822.5:c.856C>T	p.Arg286Ter	p.R286*	ENST00000354822	NM_001079668.2	286	Cga/Tga																																													NEWRECORD																																		
SLX4	84464	MSKCC	GRCh37	16	3641221	3641221	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1650	134	1552	1	ENST00000294008.3:c.2418G>T	p.Glu806Asp	p.E806D	ENST00000294008	NM_032444.2	806	gaG/gaT																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	10273878	10273878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	82	1157	2	ENST00000330684.3:c.391G>A	p.Ala131Thr	p.A131T	ENST00000330684	NM_001134407.1	131	Gca/Aca																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23647343	23647343	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	70	982	1	ENST00000261584.4:c.524G>T	p.Arg175Ile	p.R175I	ENST00000261584	NM_024675.3	175	aGa/aTa																																													NEWRECORD																																		
NUP93	9688	MSKCC	GRCh37	16	56852631	56852631	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	60	814	0	ENST00000308159.5:c.545A>G	p.Glu182Gly	p.E182G	ENST00000308159	NM_014669.4	182	gAg/gGg																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67655373	67655373	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	79	923	0	ENST00000264010.4:c.1236T>A	p.Cys412Ter	p.C412*	ENST00000264010	NM_006565.3	412	tgT/tgA																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72827421	72827421	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	60	1111	0	ENST00000268489.5:c.9160G>T	p.Asp3054Tyr	p.D3054Y	ENST00000268489	NM_006885.3	3054	Gac/Tac																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81944267	81944267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	75	1032	1	ENST00000359376.3:c.1876G>A	p.Glu626Lys	p.E626K	ENST00000359376	NM_002661.3	626	Gag/Aag																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81973552	81973552	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	67	958	0	ENST00000359376.3:c.3369A>C	p.Glu1123Asp	p.E1123D	ENST00000359376	NM_002661.3	1123	gaA/gaC																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89346073	89346073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	13	108	0	ENST00000301030.4:c.6877G>A	p.Asp2293Asn	p.D2293N	ENST00000301030	NM_001256183.1	2293	Gac/Aac																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89347486	89347486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	44	803	1	ENST00000301030.4:c.5464G>A	p.Asp1822Asn	p.D1822N	ENST00000301030	NM_001256183.1	1822	Gac/Aac																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89349877	89349877	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1492	110	1562	0	ENST00000301030.4:c.3073C>A	p.Pro1025Thr	p.P1025T	ENST00000301030	NM_001256183.1	1025	Cca/Aca																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89351718	89351718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1224	76	1155	0	ENST00000301030.4:c.1232C>T	p.Ser411Leu	p.S411L	ENST00000301030	NM_001256183.1	411	tCg/tTg																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15971357	15971357	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151311067		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	67	921	0	ENST00000268712.3:c.4592C>T	p.Ala1531Val	p.A1531V	ENST00000268712	NM_006311.3	1531	gCg/gTg																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17131373	17131373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	88	956	2	ENST00000285071.4:c.79G>A	p.Ala27Thr	p.A27T	ENST00000285071	NM_144997.5	27	Gcc/Acc																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435098	56435098	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	84	973	0	ENST00000407977.2:c.2039T>G	p.Ile680Ser	p.I680S	ENST00000407977		680	aTt/aGt																																													NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58740723	58740723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	51	848	1	ENST00000305921.3:c.1628C>A	p.Ser543Tyr	p.S543Y	ENST00000305921	NM_003620.3	543	tCt/tAt																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78796881	78796881	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	43	639	0	ENST00000306801.3:c.994C>A	p.Leu332Ile	p.L332I	ENST00000306801	NM_020761.2	332	Ctc/Atc																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7122984	7122984	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1176	75	1269	0	ENST00000302850.5:c.3275T>G	p.Val1092Gly	p.V1092G	ENST00000302850	NM_000208.2	1092	gTg/gGg																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7168072	7168072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	69	878	0	ENST00000302850.5:c.1517G>A	p.Arg506Gln	p.R506Q	ENST00000302850	NM_000208.2	506	cGg/cAg																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10246843	10246843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1225	82	1202	1	ENST00000340748.4:c.4562G>A	p.Gly1521Asp	p.G1521D	ENST00000340748		1521	gGc/gAc																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10246861	10246861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1271	75	1208	0	ENST00000340748.4:c.4544G>A	p.Gly1515Glu	p.G1515E	ENST00000340748		1515	gGa/gAa																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10265385	10265385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	66	1133	2	ENST00000340748.4:c.1661C>T	p.Ala554Val	p.A554V	ENST00000340748		554	gCg/gTg																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10602769	10602769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1304	107	1194	3	ENST00000171111.5:c.809C>T	p.Ala270Val	p.A270V	ENST00000171111	NM_203500.1	270	gCc/gTc																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15349232	15349232	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	62	892	0	ENST00000263377.2:c.4045T>G	p.Phe1349Val	p.F1349V	ENST00000263377	NM_058243.2	1349	Ttc/Gtc																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15375309	15375309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1142	66	1061	1	ENST00000263377.2:c.1118C>T	p.Ala373Val	p.A373V	ENST00000263377	NM_058243.2	373	gCc/gTc																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17949196	17949196	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	81	814	0	ENST00000458235.1:c.1445A>C	p.Lys482Thr	p.K482T	ENST00000458235	NM_000215.3	482	aAg/aCg																																													NEWRECORD																																		
ERCC3	2071	MSKCC	GRCh37	2	128036895	128036895	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	89	1020	0	ENST00000285398.2:c.1584G>T	p.Lys528Asn	p.K528N	ENST00000285398	NM_000122.1	528	aaG/aaT																																													NEWRECORD																																		
NFE2L2	4780	MSKCC	GRCh37	2	178095813	178095813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	58	705	0	ENST00000397062.3:c.1518G>T	p.Lys506Asn	p.K506N	ENST00000397062	NM_006164.4	506	aaG/aaT																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227663425	227663425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	44	526	0	ENST00000305123.5:c.30C>A	p.Phe10Leu	p.F10L	ENST00000305123	NM_005544.2	10	ttC/ttA																																													NEWRECORD																																		
TMPRSS2	7113	MSKCC	GRCh37	21	42839671	42839671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	84	1076	3	ENST00000398585.3:c.1568G>A	p.Arg523Gln	p.R523Q	ENST00000398585	NM_001135099.1	523	cGa/cAa																																													NEWRECORD																																		
NF2	4771	MSKCC	GRCh37	22	30035134	30035134	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	63	870	0	ENST00000338641.4:c.296A>C	p.Lys99Thr	p.K99T	ENST00000338641	NM_000268.3	99	aAa/aCa																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41523693	41523693	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs983340187		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1219	70	1193	2	ENST00000263253.7:c.1109G>A	p.Arg370His	p.R370H	ENST00000263253	NM_001429.3	370	cGc/cAc																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41551082	41551082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	64	1063	2	ENST00000263253.7:c.3226C>T	p.Arg1076Cys	p.R1076C	ENST00000263253	NM_001429.3	1076	Cgt/Tgt																																													NEWRECORD																																		
RAF1	5894	MSKCC	GRCh37	3	12641287	12641287	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	50	758	0	ENST00000251849.4:c.1011T>G	p.Asp337Glu	p.D337E	ENST00000251849	NM_002880.3	337	gaT/gaG																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47163387	47163387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	42	529	0	ENST00000409792.3:c.2739G>T	p.Lys913Asn	p.K913N	ENST00000409792	NM_014159.6	913	aaG/aaT																																													NEWRECORD																																		
MST1	4485	MSKCC	GRCh37	3	49723053	49723053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	25	337	3	ENST00000449682.2:c.1363G>A	p.Asp455Asn	p.D455N	ENST00000449682	NM_020998.3	455	Gac/Aac																																													NEWRECORD																																		
BAP1	8314	MSKCC	GRCh37	3	52442051	52442051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	74	891	1	ENST00000460680.1:c.298C>T	p.Leu100Phe	p.L100F	ENST00000460680	NM_004656.3	100	Ctc/Ttc																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52643618	52643618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	62	772	1	ENST00000394830.3:c.2278C>T	p.Arg760Cys	p.R760C	ENST00000394830	NM_018313.4	760	Cgc/Tgc																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52649387	52649387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1135	68	1180	2	ENST00000394830.3:c.1904C>T	p.Ala635Val	p.A635V	ENST00000394830	NM_018313.4	635	gCt/gTt																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52651531	52651531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	45	727	0	ENST00000394830.3:c.1565G>A	p.Arg522Gln	p.R522Q	ENST00000394830	NM_018313.4	522	cGa/cAa																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89498444	89498444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	35	530	0	ENST00000336596.2:c.2416G>A	p.Asp806Asn	p.D806N	ENST00000336596	NM_005233.5	806	Gat/Aat																																													NEWRECORD																																		
GSK3B	2932	MSKCC	GRCh37	3	119720900	119720900	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	39	599	0	ENST00000316626.5:c.275G>T	p.Arg92Ile	p.R92I	ENST00000316626		92	aGa/aTa																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142279197	142279197	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs200968047		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	63	962	3	ENST00000350721.4:c.1449G>T	p.Lys483Asn	p.K483N	ENST00000350721	NM_001184.3	483	aaG/aaT																																													NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185195171	185195171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	42	579	1	ENST00000265026.3:c.2488C>T	p.Pro830Ser	p.P830S	ENST00000265026	NM_004721.4	830	Cca/Tca																																													NEWRECORD																																		
WHSC1	7468	MSKCC	GRCh37	4	1920289	1920289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	79	976	3	ENST00000382891.5:c.1349G>T	p.Arg450Leu	p.R450L	ENST00000382891	NM_133335.3	450	cGa/cTa																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153251901	153251901	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	43	838	0	ENST00000281708.4:c.1105G>T	p.Glu369Ter	p.E369*	ENST00000281708	NM_033632.3	369	Gaa/Taa																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187517775	187517775	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	32	332	0	ENST00000441802.2:c.12919A>C	p.Asn4307His	p.N4307H	ENST00000441802	NM_005245.3	4307	Aac/Cac																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187524651	187524651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	72	1110	0	ENST00000441802.2:c.11029G>A	p.Asp3677Asn	p.D3677N	ENST00000441802	NM_005245.3	3677	Gac/Aac																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187534462	187534462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	41	585	0	ENST00000441802.2:c.9264G>T	p.Glu3088Asp	p.E3088D	ENST00000441802	NM_005245.3	3088	gaG/gaT																																													NEWRECORD																																		
SDHA	6389	MSKCC	GRCh37	5	218531	218531	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	23	179	2	ENST00000264932.6:c.61G>A	p.Ala21Thr	p.A21T	ENST00000264932	NM_004168.2	21	Gcg/Acg																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38962629	38962629	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	35	784	1	ENST00000357387.3:c.1626G>T	p.Glu542Asp	p.E542D	ENST00000357387	NM_152756.3	542	gaG/gaT																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67589552	67589552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	18	407	0	ENST00000274335.5:c.1315G>A	p.Glu439Lys	p.E439K	ENST00000274335		439	Gaa/Aaa																																													NEWRECORD																																		
MSH3	4437	MSKCC	GRCh37	5	80160683	80160684	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	73	1297	0	ENST00000265081.6:c.3059dup	p.Asn1020LysfsTer17	p.N1020Kfs*17	ENST00000265081	NM_002439.4	1018	gaa/gAaa																																													NEWRECORD																																		
MSH3	4437	MSKCC	GRCh37	5	80169100	80169100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	33	561	2	ENST00000265081.6:c.3296C>T	p.Thr1099Met	p.T1099M	ENST00000265081	NM_002439.4	1099	aCg/aTg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173632	112173632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	37	504	1	ENST00000257430.4:c.2341C>T	p.Pro781Ser	p.P781S	ENST00000257430	NM_000038.5	781	Ccc/Tcc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112177223	112177223	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	39	394	1	ENST00000257430.4:c.5932G>T	p.Glu1978Ter	p.E1978*	ENST00000257430	NM_000038.5	1978	Gaa/Taa																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176631256	176631256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	35	502	0	ENST00000439151.2:c.1199G>A	p.Arg400Lys	p.R400K	ENST00000439151	NM_022455.4	400	aGa/aAa																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180050958	180050958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1265	78	1302	4	ENST00000261937.6:c.1525G>A	p.Glu509Lys	p.E509K	ENST00000261937	NM_182925.4	509	Gag/Aag																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32166821	32166821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1199	82	1013	1	ENST00000375023.3:c.4417C>T	p.Arg1473Cys	p.R1473C	ENST00000375023	NM_004557.3	1473	Cgt/Tgt																																													NEWRECORD																																		
TAP2	6891	MSKCC	GRCh37	6	32797788	32797788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	54	985	2	ENST00000374899.4:c.1714G>A	p.Glu572Lys	p.E572K	ENST00000374899	NM_018833.2	572	Gaa/Aaa																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	93979253	93979253	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	37	661	0	ENST00000369303.4:c.1575T>G	p.Asn525Lys	p.N525K	ENST00000369303	NM_004440.3	525	aaT/aaG																																													NEWRECORD																																		
PRDM1	639	MSKCC	GRCh37	6	106534430	106534430	+	start_lost	Translation_Start_Site	SNP	T	T	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	35	591	0	ENST00000369096.4:c.2T>G	p.Met1?	p.M1?	ENST00000369096	NM_001198.3	1	aTg/aGg																																													NEWRECORD																																		
SESN1	27244	MSKCC	GRCh37	6	109314090	109314090	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	47	870	0	ENST00000436639.2:c.1133T>G	p.Val378Gly	p.V378G	ENST00000436639	NM_014454.2	378	gTt/gGt																																													NEWRECORD																																		
INHBA	3624	MSKCC	GRCh37	7	41729631	41729631	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	42	760	0	ENST00000242208.4:c.898T>G	p.Ser300Ala	p.S300A	ENST00000242208	NM_002192.2	300	Tct/Gct																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55210116	55210116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	44	850	0	ENST00000275493.2:c.226C>A	p.Leu76Ile	p.L76I	ENST00000275493	NM_005228.3	76	Ctt/Att																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116339776	116339776	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367722737		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	37	587	0	ENST00000397752.3:c.638C>T	p.Ser213Leu	p.S213L	ENST00000397752	NM_000245.2	213	tCg/tTg																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151845367	151845367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	59	882	0	ENST00000262189.6:c.13645C>T	p.Arg4549Cys	p.R4549C	ENST00000262189	NM_170606.2	4549	Cgc/Tgc																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151878749	151878749	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1211949081		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	37	589	1	ENST00000262189.6:c.6196C>T	p.Arg2066Ter	p.R2066*	ENST00000262189	NM_170606.2	2066	Cga/Tga																																													NEWRECORD																																		
FGFR1	2260	MSKCC	GRCh37	8	38279438	38279438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	68	876	1	ENST00000425967.3:c.1051G>A	p.Asp351Asn	p.D351N	ENST00000425967	NM_001174067.1	351	Gac/Aac																																													NEWRECORD																																		
RAD21	5885	MSKCC	GRCh37	8	117874125	117874125	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	56	865	0	ENST00000297338.2:c.329T>C	p.Leu110Ser	p.L110S	ENST00000297338	NM_006265.2	110	tTa/tCa																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8485846	8485846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	32	557	1	ENST00000356435.5:c.2971G>A	p.Asp991Asn	p.D991N	ENST00000356435		991	Gat/Aat																																													NEWRECORD																																		
TEK	7010	MSKCC	GRCh37	9	27157936	27157936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	47	868	1	ENST00000380036.4:c.160C>A	p.Pro54Thr	p.P54T	ENST00000380036	NM_000459.3	54	Ccc/Acc																																													NEWRECORD																																		
PAX5	5079	MSKCC	GRCh37	9	37034011	37034011	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	52	641	0	ENST00000358127.4:c.18T>A	p.Asn6Lys	p.N6K	ENST00000358127	NM_001280556.1	6	aaT/aaA																																													NEWRECORD																																		
SYK	6850	MSKCC	GRCh37	9	93650169	93650169	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	51	713	0	ENST00000375746.1:c.1720C>T	p.Arg574Ter	p.R574*	ENST00000375746	NM_001174167.1	574	Cga/Tga																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98238441	98238441	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	34	542	0	ENST00000331920.6:c.1603G>A	p.Asp535Asn	p.D535N	ENST00000331920	NM_000264.3	535	Gac/Aac																																													NEWRECORD																																		
MAPKAP1	79109	MSKCC	GRCh37	9	128347994	128347994	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	72	1157	1	ENST00000265960.3:c.511A>G	p.Thr171Ala	p.T171A	ENST00000265960	NM_001006617.1	171	Aca/Gca																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133760166	133760166	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	46	784	1	ENST00000318560.5:c.2489T>A	p.Leu830His	p.L830H	ENST00000318560	NM_005157.4	830	cTc/cAc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0020474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	171	994	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs387906846		P-0020474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	65	626	1	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48947540	48947540	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0020474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	186	880	0	ENST00000267163.4:c.1128-1G>C		p.X376_splice	ENST00000267163	NM_000321.2	376																																														NEWRECORD																																		
NFKBIA	4792	MSKCC	GRCh37	14	35871652	35871652	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	61	610	0	ENST00000216797.5:c.854A>T	p.Asp285Val	p.D285V	ENST00000216797	NM_020529.2	285	gAt/gTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0020472-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	164	1111	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020472-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			491	30	515	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5229545	5229545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020472-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	64	336	1	ENST00000357368.4:c.2306G>A	p.Arg769His	p.R769H	ENST00000357368	NM_002850.3	769	cGc/cAc																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52663039	52663039	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020472-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	42	412	0	ENST00000394830.3:c.1314G>C	p.Lys438Asn	p.K438N	ENST00000394830	NM_018313.4	438	aaG/aaC																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0020481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	401	1096	1	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																														NEWRECORD																																		
PGR	5241	MSKCC	GRCh37	11	100998214	100998215	+	missense_variant	Missense_Mutation	DNP	GC	GC	AG			P-0020481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	43	820	6	ENST00000325455.5:c.1587_1588delinsCT	p.Leu530Phe	p.L530F	ENST00000325455	NM_001202474.3	529	gtGCtc/gtCTtc																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103518158	103518158	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	49	420	0	ENST00000355739.4:c.2096G>C	p.Ser699Thr	p.S699T	ENST00000355739	NM_000123.3	699	aGc/aCc																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67590424	67590424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	152	347	0	ENST00000274335.5:c.1486G>C	p.Glu496Gln	p.E496Q	ENST00000274335		496	Gaa/Caa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173956	112173957	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0020481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	312	561	0	ENST00000257430.4:c.2666_2667del	p.Lys889SerfsTer22	p.K889Sfs*22	ENST00000257430	NM_000038.5	889	AAa/a																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0020480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	183	1127	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212251754	212251754	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	34	505	0	ENST00000342788.4:c.3305T>G	p.Phe1102Cys	p.F1102C	ENST00000342788	NM_005235.2	1102	tTt/tGt																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11264705	11264705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	105	1080	2	ENST00000361445.4:c.3857G>A	p.Arg1286Gln	p.R1286Q	ENST00000361445	NM_004958.3	1286	cGg/cAg																																													NEWRECORD																																		
HLA-A	3105	MSKCC	GRCh37	6	29910711	29910711	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1328	258	1430	1	ENST00000376809.5:c.251G>A	p.Trp84Ter	p.W84*	ENST00000376809	NM_002116.7	84	tGg/tAg																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	189	880	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578466	7578466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	298	1469	0	ENST00000269305.4:c.464C>A	p.Thr155Asn	p.T155N	ENST00000269305	NM_001126112.2	155	aCc/aAc																																													NEWRECORD																																		
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2466	225	1472	6	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	416673	416673	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	231	594	0	ENST00000399788.2:c.3877G>T	p.Glu1293Ter	p.E1293*	ENST00000399788	NM_001042603.1	1293	Gaa/Taa																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115115462	115115462	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0020477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	165	848	2	ENST00000257566.3:c.865-1G>T		p.X289_splice	ENST00000257566	NM_016569.3	289																																														NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	49039497	49039497	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0020477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	220	871	0	ENST00000267163.4:c.2482A>T	p.Arg828Ter	p.R828*	ENST00000267163	NM_000321.2	828	Aga/Tga																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42059132	42059132	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	127	665	0	ENST00000219905.7:c.8852C>G	p.Thr2951Ser	p.T2951S	ENST00000219905	NM_001164273.1	2951	aCt/aGt																																													NEWRECORD																																		
ALOX12B	242	MSKCC	GRCh37	17	7979002	7979002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150371678		P-0020477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	222	1130	2	ENST00000319144.4:c.1565C>T	p.Pro522Leu	p.P522L	ENST00000319144	NM_001139.2	522	cCg/cTg																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78935227	78935227	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	307	1368	0	ENST00000306801.3:c.3639G>C	p.Trp1213Cys	p.W1213C	ENST00000306801	NM_020761.2	1213	tgG/tgC																																													NEWRECORD																																		
YES1	7525	MSKCC	GRCh37	18	736922	736922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	178	1109	0	ENST00000314574.4:c.1177A>G	p.Ile393Val	p.I393V	ENST00000314574	NM_005433.3	393	Att/Gtt																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8341793	8341793	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	220	1212	0	ENST00000356435.5:c.4847G>T	p.Gly1616Val	p.G1616V	ENST00000356435		1616	gGa/gTa																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71050124	71050128	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TGTAG	TGTAG	-			P-0020512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	75	470	0	ENST00000318789.4:c.1057_1061del	p.Leu353AlafsTer106	p.L353Afs*106	ENST00000318789	NM_032682.5	353	CTACAg/g																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135780998	135780998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	178	763	0	ENST00000298552.3:c.1967G>A	p.Gly656Glu	p.G656E	ENST00000298552	NM_001162426.1	656	gGa/gAa																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0020437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	32	1194	2	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																														NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106880	27106880	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	315	692	0	ENST00000324856.7:c.6493del	p.Glu2165ArgfsTer35	p.E2165Rfs*35	ENST00000324856	NM_006015.4	2164	cGg/cg																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187538281	187538281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	309	913	1	ENST00000441802.2:c.8953G>A	p.Asp2985Asn	p.D2985N	ENST00000441802	NM_005245.3	2985	Gac/Aac																																													NEWRECORD																																		
EIF1AX	1964	MSKCC	GRCh37	X	20156742	20156742	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0020441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	213	570	0	ENST00000379607.5:c.17-2A>T		p.X6_splice	ENST00000379607	NM_001412.3	6																																														NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	160	1404	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67063655	67063655	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	39	1169	1	ENST00000412916.2:c.104G>C	p.Arg35Pro	p.R35P	ENST00000412916		35	cGg/cCg																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56178151	56178152	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	78	626	0	ENST00000399503.3:c.3127dup	p.Ser1043PhefsTer14	p.S1043Ffs*14	ENST00000399503	NM_005921.1	1042	ctt/cTtt																																													NEWRECORD																																		
FGFR4	2264	MSKCC	GRCh37	5	176523067	176523067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	156	1185	6	ENST00000292408.4:c.1831C>T	p.Arg611Trp	p.R611W	ENST00000292408	NM_213647.1	611	Cgg/Tgg																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44733232	44733240	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTAAGGC	AGGTAAGGC	-			P-0020511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	58	719	0	ENST00000377967.4:c.225+1_225+9del		p.X75_splice	ENST00000377967	NM_021140.2	75																																														NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	122	714	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0020423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	235	730	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178921567	178921567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	79	347	0	ENST00000263967.3:c.1049A>G	p.Asp350Gly	p.D350G	ENST00000263967	NM_006218.2	350	gAc/gGc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174466	112174466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	134	306	0	ENST00000257430.4:c.3175G>A	p.Glu1059Lys	p.E1059K	ENST00000257430	NM_000038.5	1059	Gaa/Aaa																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2214510	2214510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1185	82	951	0	ENST00000398665.3:c.1838C>T	p.Thr613Met	p.T613M	ENST00000398665	NM_032482.2	613	aCg/aTg																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227661390	227661390	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141094678		P-0020423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	130	519	1	ENST00000305123.5:c.2065G>A	p.Val689Ile	p.V689I	ENST00000305123	NM_005544.2	689	Gtc/Atc																																													NEWRECORD																																		
BAP1	8314	MSKCC	GRCh37	3	52436356	52436356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	354	798	0	ENST00000460680.1:c.2138G>A	p.Arg713Gln	p.R713Q	ENST00000460680	NM_004656.3	713	cGg/cAg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174460	112174460	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	128	299	0	ENST00000257430.4:c.3169G>T	p.Glu1057Ter	p.E1057*	ENST00000257430	NM_000038.5	1057	Gaa/Taa																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	21	1013	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49431746	49431748	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0020427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	33	853	1	ENST00000301067.7:c.9391_9393del	p.Pro3131del	p.P3131del	ENST00000301067	NM_003482.3	3131	CCT/-																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115829	8115830	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	60	904	0	ENST00000346208.3:c.1178dup	p.Ala394GlyfsTer113	p.A394Gfs*113	ENST00000346208		392	aac/aaCc																																													NEWRECORD																																		
KMT2A	4297	MSKCC	GRCh37	11	118352601	118352602	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0020427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	16	590	0	ENST00000534358.1:c.3808_3809del	p.Lys1270GlufsTer2	p.K1270Efs*2	ENST00000534358	NM_005933.3	1269	gAA/g																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103518194	103518194	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	12	358	0	ENST00000355739.4:c.2132A>T	p.Asp711Val	p.D711V	ENST00000355739	NM_000123.3	711	gAt/gTt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106793	27106793	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	221	910	0	ENST00000324856.7:c.6404T>G	p.Ile2135Ser	p.I2135S	ENST00000324856	NM_006015.4	2135	aTt/aGt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0020488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	154	1034	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48951074	48951074	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	54	437	1	ENST00000267163.4:c.1236A>T	p.Lys412Asn	p.K412N	ENST00000267163	NM_000321.2	412	aaA/aaT																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579534	7579535	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0020488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	252	1298	0	ENST00000269305.4:c.152_153del	p.Glu51AlafsTer5	p.E51Afs*5	ENST00000269305	NM_001126112.2	51	gAA/g																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591853	48591853	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	131	842	0	ENST00000342988.3:c.1016T>C	p.Phe339Ser	p.F339S	ENST00000342988	NM_005359.5	339	tTt/tCt																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591886	48591886	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	150	862	0	ENST00000342988.3:c.1049T>G	p.Val350Gly	p.V350G	ENST00000342988	NM_005359.5	350	gTt/gGt																																													NEWRECORD																																		
GATA2	2624	MSKCC	GRCh37	3	128200082	128200082	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	228	1308	0	ENST00000341105.2:c.1223A>C	p.Lys408Thr	p.K408T	ENST00000341105	NM_032638.4	408	aAg/aCg																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106197573	106197573	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	94	584	0	ENST00000380013.4:c.5906A>C	p.Lys1969Thr	p.K1969T	ENST00000380013	NM_001127208.2	1969	aAg/aCg																																													NEWRECORD																																		
STK19	8859	MSKCC	GRCh37	6	31948527	31948527	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	66	363	0	ENST00000375331.2:c.998T>G	p.Leu333Arg	p.L333R	ENST00000375331	NM_004197.1	333	cTt/cGt																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	150001366	150001367	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGATTTC			P-0020488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	89	1027	0	ENST00000253339.5:c.2231_2237dup	p.Val747LysfsTer7	p.V747Kfs*7	ENST00000253339		746	caa/caGAAATCAa																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123182920	123182920	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	38	587	0	ENST00000218089.9:c.885T>A	p.His295Gln	p.H295Q	ENST00000218089	NM_001042749.1	295	caT/caA																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0020487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	107	938	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16261145	16261145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	180	672	0	ENST00000375759.3:c.8410G>A	p.Ala2804Thr	p.A2804T	ENST00000375759	NM_015001.2	2804	Gcg/Acg																																													NEWRECORD																																		
IGF2	3481	MSKCC	GRCh37	11	2154246	2154246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	101	1074	1	ENST00000434045.2:c.682C>T	p.Pro228Ser	p.P228S	ENST00000434045	NM_001127598.1	228	Ccc/Tcc																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50920350	50920365	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGAGGTGAGAGGGCC	AGGAGGTGAGAGGGCC	-			P-0020487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	247	1235	0	ENST00000440232.2:c.3116_3120+11del		p.X1039_splice	ENST00000440232	NM_002691.3	1039																																														NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31023402	31023403	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0020487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	162	796	0	ENST00000375687.4:c.2887_2888del	p.Pro963IlefsTer6	p.P963Ifs*6	ENST00000375687	NM_015338.5	963	CCa/a																																													NEWRECORD																																		
DROSHA	29102	MSKCC	GRCh37	5	31431706	31431706	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	158	867	1	ENST00000344624.3:c.3122C>A	p.Ala1041Asp	p.A1041D	ENST00000344624		1041	gCc/gAc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112137082	112137082	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0020487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	80	479	0	ENST00000257430.4:c.834+2T>G		p.X278_splice	ENST00000257430	NM_000038.5	278																																														NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112170683	112170683	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	111	794	0	ENST00000257430.4:c.1779G>A	p.Trp593Ter	p.W593*	ENST00000257430	NM_000038.5	593	tgG/tgA																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119070	70119089	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCTCCGGCATGAGCGAGG	CTCCTCCGGCATGAGCGAGG	A			P-0020487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	45	718	1	ENST00000245479.2:c.642_661delinsA	p.Ser215CysfsTer32	p.S215Cfs*32	ENST00000245479	NM_000346.3	214	tcCTCCTCCGGCATGAGCGAGGtg/tcAtg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	37	1018	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	20	621	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	36	1134	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0020493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	97	767	0	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																													NEWRECORD																																		
ERCC2	2068	MSKCC	GRCh37	19	45871940	45871940	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142462393		P-0020493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	52	1124	3	ENST00000391945.4:c.308C>T	p.Pro103Leu	p.P103L	ENST00000391945	NM_000400.3	103	cCg/cTg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0013121-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			477	643	779	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156846342	156846342	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746049437		P-0013121-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			945	568	730	1	ENST00000524377.1:c.1783G>A	p.Gly595Arg	p.G595R	ENST00000524377	NM_002529.3	595	Ggg/Agg																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	213403244	213403244	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs748663394		P-0013121-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			892	498	777	0	ENST00000342788.4:c.11C>A	p.Ala4Glu	p.A4E	ENST00000342788	NM_005235.2	4	gCg/gAg																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372070	55372070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013121-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			721	239	345	1	ENST00000297316.4:c.760G>A	p.Ala254Thr	p.A254T	ENST00000297316	NM_022454.3	254	Gcg/Acg																																													NEWRECORD																																		
PAX5	5079	MSKCC	GRCh37	9	36882073	36882073	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1372104492		P-0013121-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			969	538	732	1	ENST00000358127.4:c.940G>A	p.Gly314Arg	p.G314R	ENST00000358127	NM_001280556.1	314	Ggg/Agg																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89346901	89346901	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1455558820		P-0013121-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			684	377	560	0	ENST00000301030.4:c.6049G>A	p.Ala2017Thr	p.A2017T	ENST00000301030	NM_001256183.1	2017	Gcc/Acc																																													NEWRECORD																																		
NCOA3	8202	MSKCC	GRCh37	20	46256445	46256445	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013121-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1304	761	1056	0	ENST00000371998.3:c.673C>T	p.Gln225Ter	p.Q225*	ENST00000371998		225	Cag/Tag																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39930942	39930942	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0013121-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1243	687	982	0	ENST00000378444.4:c.2999T>C	p.Met1000Thr	p.M1000T	ENST00000378444	NM_001123385.1	1000	aTg/aCg																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44923000	44923000	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139486036		P-0013121-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1124	610	950	0	ENST00000377967.4:c.1861C>T	p.Arg621Cys	p.R621C	ENST00000377967	NM_021140.2	621	Cgc/Tgc																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013196-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			668	214	511	0				ENST00000310581	NM_198253.2																																															NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0012629-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	39	278	0	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																														NEWRECORD																																		
CDK6	1021	MSKCC	GRCh37	7	92247520	92247520	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012629-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	50	422	0	ENST00000265734.4:c.700G>T	p.Val234Leu	p.V234L	ENST00000265734	NM_001259.6	234	Gtg/Ttg																																													NEWRECORD																																		
CBL	867	MSKCC	GRCh37	11	119149251	119149251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012629-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	22	517	0	ENST00000264033.4:c.1259G>T	p.Arg420Leu	p.R420L	ENST00000264033	NM_005188.3	420	cGa/cTa																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	42	449	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180045814	180045814	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	24	514	0	ENST00000261937.6:c.2957C>G	p.Ser986Trp	p.S986W	ENST00000261937	NM_182925.4	986	tCg/tGg																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151845985	151845985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	32	463	0	ENST00000262189.6:c.13027G>A	p.Glu4343Lys	p.E4343K	ENST00000262189	NM_170606.2	4343	Gaa/Aaa																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0004045-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			540	234	384	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004045-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			503	284	576	0	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																													NEWRECORD																																		
SDHAF2	54949	MSKCC	GRCh37	11	61197647	61197647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004045-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			844	159	547	0	ENST00000301761.2:c.29C>T	p.Ser10Leu	p.S10L	ENST00000301761	NM_017841.2	10	tCg/tTg																																													NEWRECORD																																		
XPO1	7514	MSKCC	GRCh37	2	61715407	61715407	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004045-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1008	123	421	0	ENST00000401558.2:c.2207-1G>A		p.X736_splice	ENST00000401558	NM_003400.3	736																																														NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131976439	131976439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004045-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			805	106	369	0	ENST00000265335.6:c.3694G>A	p.Glu1232Lys	p.E1232K	ENST00000265335		1232	Gag/Aag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577519	7577519	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004045-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	100	203	0	ENST00000269305.4:c.762C>G	p.Ile254Met	p.I254M	ENST00000269305	NM_001126112.2	254	atC/atG																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	122	302	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																													NEWRECORD																																		
RFWD2	64326	MSKCC	GRCh37	1	175996746	175996746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	124	486	1	ENST00000367669.3:c.1691G>A	p.Ser564Asn	p.S564N	ENST00000367669	NM_022457.5	564	aGc/aAc																																													NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31376659	31376659	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	53	255	0	ENST00000328111.2:c.655-1G>T		p.X219_splice	ENST00000328111	NM_006892.3	219																																														NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11288925	11288925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	123	350	0	ENST00000361445.4:c.2830G>A	p.Asp944Asn	p.D944N	ENST00000361445	NM_004958.3	944	Gat/Aat																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106975	27106976	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	82	278	0	ENST00000324856.7:c.6587dup	p.Phe2198LeufsTer27	p.F2198Lfs*27	ENST00000324856	NM_006015.4	2196	ctg/cTtg																																													NEWRECORD																																		
CSF3R	1441	MSKCC	GRCh37	1	36932865	36932865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1457	183	703	0	ENST00000361632.4:c.2006G>T	p.Ser669Ile	p.S669I	ENST00000361632		669	aGc/aTc																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18435677	18435677	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	59	208	0	ENST00000266497.5:c.662G>A	p.Trp221Ter	p.W221*	ENST00000266497		221	tGg/tAg																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46246365	46246365	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	231	388	0	ENST00000334344.6:c.4461del	p.Asp1488ThrfsTer28	p.D1488Tfs*28	ENST00000334344	NM_152641.2	1487	Ccc/cc																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56478893	56478893	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1541	173	600	1	ENST00000267101.3:c.349A>T	p.Ile117Phe	p.I117F	ENST00000267101	NM_001982.3	117	Atc/Ttc																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57864768	57864768	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1428	470	715	0	ENST00000228682.2:c.2245G>T	p.Gly749Cys	p.G749C	ENST00000228682	NM_005269.2	749	Ggc/Tgc																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115112047	115112047	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	79	369	0	ENST00000257566.3:c.1693G>T	p.Ala565Ser	p.A565S	ENST00000257566	NM_016569.3	565	Gct/Tct																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95566212	95566212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	82	441	0	ENST00000343455.3:c.4111G>T	p.Val1371Leu	p.V1371L	ENST00000343455	NM_177438.2	1371	Gtg/Ttg																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29557401	29557401	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	108	236	0	ENST00000358273.4:c.3113+1G>T		p.X1038_splice	ENST00000358273	NM_001042492.2	1038																																														NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56436001	56436001	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	36	241	0	ENST00000407977.2:c.1136A>T	p.Gln379Leu	p.Q379L	ENST00000407977		379	cAg/cTg																																													NEWRECORD																																		
RAD51C	5889	MSKCC	GRCh37	17	56798141	56798141	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1112	218	534	0	ENST00000337432.4:c.872A>T	p.Asp291Val	p.D291V	ENST00000337432	NM_058216.2	291	gAt/gTt																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59878765	59878765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	153	372	0	ENST00000259008.2:c.989G>T	p.Gly330Val	p.G330V	ENST00000259008	NM_032043.2	330	gGg/gTg																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2216598	2216598	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	172	419	1	ENST00000398665.3:c.2242G>T	p.Val748Leu	p.V748L	ENST00000398665	NM_032482.2	748	Gtg/Ttg																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10600330	10600330	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	183	425	0	ENST00000171111.5:c.1525G>T	p.Gly509Trp	p.G509W	ENST00000171111	NM_203500.1	509	Ggg/Tgg																																													NEWRECORD																																		
BBC3	27113	MSKCC	GRCh37	19	47724980	47724980	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1369	151	547	0	ENST00000449228.1:c.764G>C	p.Gly255Ala	p.G255A	ENST00000449228	NM_001127240.2	255	gGg/gCg																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50905993	50905993	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1228	179	557	0	ENST00000440232.2:c.965G>T	p.Arg322Leu	p.R322L	ENST00000440232	NM_002691.3	322	cGc/cTc																																													NEWRECORD																																		
CXCR4	7852	MSKCC	GRCh37	2	136872776	136872776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2166	142	809	0	ENST00000241393.3:c.722C>T	p.Thr241Ile	p.T241I	ENST00000241393	NM_003467.2	241	aCa/aTa																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212295774	212295774	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	82	492	0	ENST00000342788.4:c.2539C>G	p.Arg847Gly	p.R847G	ENST00000342788	NM_005235.2	847	Cgt/Ggt																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9546635	9546635	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1320	291	605	2	ENST00000353224.5:c.1387G>T	p.Val463Leu	p.V463L	ENST00000353224	NM_177990.2	463	Gta/Tta																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40735452	40735452	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	158	557	2	ENST00000373198.4:c.3421C>A	p.Gln1141Lys	p.Q1141K	ENST00000373198	NM_133170.3	1141	Caa/Aaa																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40735461	40735461	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1043	98	538	0	ENST00000373198.4:c.3412C>A	p.Leu1138Ile	p.L1138I	ENST00000373198	NM_133170.3	1138	Ctc/Atc																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40790149	40790149	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	56	196	0	ENST00000373198.4:c.2582C>A	p.Thr861Asn	p.T861N	ENST00000373198	NM_133170.3	861	aCc/aAc																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89259206	89259206	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	45	361	0	ENST00000336596.2:c.350A>T	p.Lys117Met	p.K117M	ENST00000336596	NM_005233.5	117	aAg/aTg																																													NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189612212	189612212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	96	367	0	ENST00000264731.3:c.1964G>T	p.Arg655Leu	p.R655L	ENST00000264731	NM_003722.4	655	cGa/cTa																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55946301	55946301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	60	269	0	ENST00000263923.4:c.3878C>A	p.Ser1293Tyr	p.S1293Y	ENST00000263923	NM_002253.2	1293	tCt/tAt																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66356209	66356209	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	79	422	0	ENST00000273854.3:c.1288G>T	p.Asp430Tyr	p.D430Y	ENST00000273854	NM_004439.5	430	Gat/Tat																																													NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35871262	35871262	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	146	332	0	ENST00000303115.3:c.484G>T	p.Val162Phe	p.V162F	ENST00000303115	NM_002185.3	162	Gtt/Ttt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112179493	112179493	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1106	131	569	1	ENST00000257430.4:c.8202A>T	p.Lys2734Asn	p.K2734N	ENST00000257430	NM_000038.5	2734	aaA/aaT																																													NEWRECORD																																		
CSF1R	1436	MSKCC	GRCh37	5	149457684	149457684	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1050	84	485	1	ENST00000286301.3:c.720C>A	p.Asn240Lys	p.N240K	ENST00000286301	NM_005211.3	240	aaC/aaA																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149503812	149503812	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	120	472	0	ENST00000261799.4:c.2023+1G>T		p.X675_splice	ENST00000261799	NM_002609.3	675																																														NEWRECORD																																		
FYN	2534	MSKCC	GRCh37	6	112041076	112041076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1446	78	735	0	ENST00000368678.4:c.179G>T	p.Gly60Val	p.G60V	ENST00000368678		60	gGa/gTa																																													NEWRECORD																																		
INHBA	3624	MSKCC	GRCh37	7	41739732	41739732	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1669	187	786	0	ENST00000242208.4:c.241del	p.Ala81ArgfsTer4	p.A81Rfs*4	ENST00000242208	NM_002192.2	81	Gcg/cg																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151842373	151842373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	75	280	0	ENST00000262189.6:c.14039G>T	p.Gly4680Val	p.G4680V	ENST00000262189	NM_170606.2	4680	gGg/gTg																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55371713	55371713	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	65	287	0	ENST00000297316.4:c.403T>A	p.Tyr135Asn	p.Y135N	ENST00000297316	NM_022454.3	135	Tac/Aac																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372304	55372304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	76	252	0	ENST00000297316.4:c.994C>A	p.Gln332Lys	p.Q332K	ENST00000297316	NM_022454.3	332	Cag/Aag																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8331585	8331585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1047	139	549	0	ENST00000356435.5:c.5531G>A	p.Cys1844Tyr	p.C1844Y	ENST00000356435		1844	tGc/tAc																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8341847	8341847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1089	92	565	0	ENST00000356435.5:c.4793C>A	p.Thr1598Lys	p.T1598K	ENST00000356435		1598	aCa/aAa																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8499774	8499774	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	67	478	0	ENST00000356435.5:c.2195G>T	p.Trp732Leu	p.W732L	ENST00000356435		732	tGg/tTg																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70349009	70349009	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1340	128	646	1	ENST00000374080.3:c.3521G>T	p.Arg1174Leu	p.R1174L	ENST00000374080		1174	cGc/cTc																																													NEWRECORD																																		
ALOX12B	242	MSKCC	GRCh37	17	7980435	7980435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002961-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			368	91	441	0	ENST00000319144.4:c.1148C>T	p.Thr383Met	p.T383M	ENST00000319144	NM_001139.2	383	aCg/aTg																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15366981	15366982	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002961-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	83	724	1	ENST00000263377.2:c.1644dupA	p.Glu549ArgfsTer13	p.E549Rfs*13	ENST00000263377	NM_058243.2	548	-/A																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003523-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			321	9	555	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0003523-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			449	116	392	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0003523-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			299	65	631	2	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																													NEWRECORD																																		
CSF3R	1441	MSKCC	GRCh37	1	36934771	36934771	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003523-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			737	155	1030	0	ENST00000361632.4:c.1562A>G	p.Tyr521Cys	p.Y521C	ENST00000361632		521	tAc/tGc																																													NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115256600	115256600	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0003523-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			333	62	257	0	ENST00000369535.4:c.112-1G>A		p.X38_splice	ENST00000369535	NM_002524.4	38																																														NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47163115	47163115	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003523-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			470	131	421	0	ENST00000409792.3:c.3011A>T	p.Asp1004Val	p.D1004V	ENST00000409792	NM_014159.6	1004	gAt/gTt																																													NEWRECORD																																		
SYK	6850	MSKCC	GRCh37	9	93624564	93624564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003523-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			524	129	669	0	ENST00000375746.1:c.655G>A	p.Asp219Asn	p.D219N	ENST00000375746	NM_001174167.1	219	Gac/Aac																																													NEWRECORD																																		
LMO1	4004	MSKCC	GRCh37	11	8251991	8251991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003523-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			448	94	642	0	ENST00000335790.3:c.86G>T	p.Arg29Leu	p.R29L	ENST00000335790	NM_002315.2	29	cGc/cTc																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70352365	70352365	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003523-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			736	148	1131	0	ENST00000374080.3:c.4392A>T	p.Glu1464Asp	p.E1464D	ENST00000374080		1464	gaA/gaT																																													NEWRECORD																																		
EIF4E	1977	MSKCC	GRCh37	4	99809063	99809064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003523-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			769	134	470	0	ENST00000280892.6:c.321dup	p.Gly108TrpfsTer3	p.G108Wfs*3	ENST00000280892	NM_001130678.1	107	-/T																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57863217	57863218	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0003523-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			476	82	877	0	ENST00000228682.2:c.1312_1313delinsAA	p.Pro438Lys	p.P438K	ENST00000228682	NM_005269.2	438	CCa/AAa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579575	7579575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	550	388	1	ENST00000269305.4:c.112C>T	p.Gln38Ter	p.Q38*	ENST00000269305	NM_001126112.2	38	Caa/Taa																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	595	537	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120458310	120458310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	180	351	0	ENST00000256646.2:c.7035G>T	p.Met2345Ile	p.M2345I	ENST00000256646	NM_024408.3	2345	atG/atT																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25965216	25965216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	218	500	1	ENST00000435504.4:c.3990G>A	p.Met1330Ile	p.M1330I	ENST00000435504		1330	atG/atA																																													NEWRECORD																																		
TMEM127	55654	MSKCC	GRCh37	2	96931046	96931046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	62	130	0	ENST00000258439.3:c.74A>G	p.Lys25Arg	p.K25R	ENST00000258439	NM_001193304.2	25	aAg/aGg																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187539324	187539324	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	198	523	0	ENST00000441802.2:c.8416A>T	p.Ser2806Cys	p.S2806C	ENST00000441802	NM_005245.3	2806	Agc/Tgc																																													NEWRECORD																																		
SDHA	6389	MSKCC	GRCh37	5	224520	224520	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	111	217	0	ENST00000264932.6:c.196G>C	p.Val66Leu	p.V66L	ENST00000264932	NM_004168.2	66	Gtg/Ctg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112178662	112178662	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	178	505	0	ENST00000257430.4:c.7371G>C	p.Glu2457Asp	p.E2457D	ENST00000257430	NM_000038.5	2457	gaG/gaC																																													NEWRECORD																																		
HIST1H3A	8350	MSKCC	GRCh37	6	26020874	26020874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1446	413	1166	0	ENST00000357647.3:c.157C>T	p.Arg53Cys	p.R53C	ENST00000357647	NM_003529.2	53	Cgc/Tgc																																													NEWRECORD																																		
HIST1H3B	8358	MSKCC	GRCh37	6	26032169	26032169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	650	811	2	ENST00000244661.2:c.120C>A	p.His40Gln	p.H40Q	ENST00000244661	NM_003537.3	40	caC/caA																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117710984	117710984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	193	178	0	ENST00000368508.3:c.1288G>T	p.Gly430Cys	p.G430C	ENST00000368508	NM_002944.2	430	Ggc/Tgc																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106509427	106509427	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	1478	652	0	ENST00000359195.3:c.1421T>A	p.Leu474His	p.L474H	ENST00000359195	NM_002649.2	474	cTc/cAc																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145741242	145741242	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1203	520	631	0	ENST00000428558.2:c.1164G>C	p.Glu388Asp	p.E388D	ENST00000428558	NM_004260.3	388	gaG/gaC																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115111970	115111970	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	199	258	0	ENST00000257566.3:c.1770G>C	p.Gln590His	p.Q590H	ENST00000257566	NM_016569.3	590	caG/caC																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88472468	88472468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	228	573	1	ENST00000360948.2:c.2087G>T	p.Gly696Val	p.G696V	ENST00000360948	NM_001012338.2	696	gGg/gTg																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72993518	72993518	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1349	403	797	1	ENST00000268489.5:c.527G>T	p.Gly176Val	p.G176V	ENST00000268489	NM_006885.3	176	gGc/gTc																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70118883	70118883	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	632	629	0	ENST00000245479.2:c.455G>C	p.Arg152Pro	p.R152P	ENST00000245479	NM_000346.3	152	cGg/cCg																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78704391	78704391	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	255	484	0	ENST00000306801.3:c.539A>G	p.Tyr180Cys	p.Y180C	ENST00000306801	NM_020761.2	180	tAt/tGt																																													NEWRECORD																																		
PIK3C3	5289	MSKCC	GRCh37	18	39623724	39623724	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	223	582	3	ENST00000262039.4:c.2131G>T	p.Glu711Ter	p.E711*	ENST00000262039	NM_002647.2	711	Gag/Tag																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10600045	10600045	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	363	334	0	ENST00000171111.5:c.1532-1G>T		p.X511_splice	ENST00000171111	NM_203500.1	511																																														NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40735500	40735500	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	271	504	1	ENST00000373198.4:c.3373A>T	p.Asn1125Tyr	p.N1125Y	ENST00000373198	NM_133170.3	1125	Aat/Tat																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101460	27101460	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	290	602	0	ENST00000324856.7:c.4742del	p.His1581ProfsTer31	p.H1581Pfs*31	ENST00000324856	NM_006015.4	1581	cAc/cc																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	102	214	0	ENST00000304494.5:c.262delG	p.Glu88ArgfsTer58	p.E88Rfs*58	ENST00000304494	NM_000077.4	88	Gag/ag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	29	381	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	49030367	49030368	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	31	332	0	ENST00000267163.4:c.1848dupA	p.Gly617ArgfsTer36	p.G617Rfs*36	ENST00000267163	NM_000321.2	614	-/A																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41726677	41726677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	54	484	0	ENST00000301178.4:c.222G>C	p.Gln74His	p.Q74H	ENST00000301178	NM_021913.4	74	caG/caC																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578493	7578500	+	frameshift_variant	Frame_Shift_Del	DEL	CACAGCTG	CACAGCTG	-			P-0009911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	48	427	0	ENST00000269305.4:c.430_437del	p.Gln144GlyfsTer2	p.Q144Gfs*2	ENST00000269305	NM_001126112.2	144	CAGCTGTGg/g																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48953741	48953742	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001121-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			407	205	342	0	ENST00000267163.4:c.1346dupG	p.Val450SerfsTer13	p.V450Sfs*13	ENST00000267163	NM_000321.2	448	-/G																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	277	458	1	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																													NEWRECORD																																		
XPO1	7514	MSKCC	GRCh37	2	61712943	61712943	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	569	565	0	ENST00000401558.2:c.2468T>G	p.Phe823Cys	p.F823C	ENST00000401558	NM_003400.3	823	tTt/tGt																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198267340	198267340	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	136	505	0	ENST00000335508.6:c.2017A>T	p.Ile673Phe	p.I673F	ENST00000335508	NM_012433.2	673	Att/Ttt																																													NEWRECORD																																		
SOCS1	8651	MSKCC	GRCh37	16	11348741	11348741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	231	515	1	ENST00000332029.2:c.595G>A	p.Val199Ile	p.V199I	ENST00000332029	NM_003745.1	199	Gtc/Atc																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48954342	48954343	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0012368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	22	259	0	ENST00000267163.4:c.1465_1466dup	p.Glu492LeufsTer4	p.E492Lfs*4	ENST00000267163	NM_000321.2	488	gcg/gcGTg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	134	375	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0012751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	158	530	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225376187	225376187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1172	229	645	1	ENST00000264414.4:c.767C>T	p.Thr256Met	p.T256M	ENST00000264414	NM_003590.4	256	aCg/aTg																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44929395	44929395	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	262	403	0	ENST00000377967.4:c.2496del	p.Thr833LeufsTer34	p.T833Lfs*34	ENST00000377967	NM_021140.2	832	tCc/tc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0006676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	139	189	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0006676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	501	456	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	161	276	1	ENST00000346208.3:c.1275dupA	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162722960	162722960	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0006676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	486	543	0	ENST00000367921.3:c.158C>G	p.Ser53Ter	p.S53*	ENST00000367921	NM_006182.2	53	tCa/tGa																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30713316	30713316	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	652	337	0	ENST00000359013.4:c.716A>G	p.Glu239Gly	p.E239G	ENST00000359013	NM_001024847.2	239	gAg/gGg																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46230405	46230405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	265	320	0	ENST00000334344.6:c.739C>T	p.Arg247Cys	p.R247C	ENST00000334344	NM_152641.2	247	Cgt/Tgt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	34	414	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89259263	89259263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	31	436	0	ENST00000336596.2:c.407G>A	p.Arg136Gln	p.R136Q	ENST00000336596	NM_005233.5	136	cGa/cAa																																													NEWRECORD																																		
FYN	2534	MSKCC	GRCh37	6	112041025	112041025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1211	81	591	0	ENST00000368678.4:c.230G>A	p.Arg77His	p.R77H	ENST00000368678		77	cGt/cAt																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152163912	152163912	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	47	469	0	ENST00000206249.3:c.633A>T	p.Arg211Ser	p.R211S	ENST00000206249	NM_000125.3	211	agA/agT																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs530941076		P-0005558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	71	599	0	ENST00000269305.4:c.658T>C	p.Tyr220His	p.Y220H	ENST00000269305	NM_001126112.2	220	Tat/Cat																																													NEWRECORD																																		
DNAJB1	3337	MSKCC	GRCh37	19	14627666	14627666	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1210	70	660	0	ENST00000254322.2:c.404C>G	p.Pro135Arg	p.P135R	ENST00000254322	NM_006145.1	135	cCt/cGt																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48573523	48573524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	46	592	0	ENST00000342988.3:c.112dup	p.Arg38LysfsTer4	p.R38Kfs*4	ENST00000342988	NM_005359.5	36	gca/gcAa																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971207	21971216	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGCCAGAG	CCTGCCAGAG	-			P-0005558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	32	169	0	ENST00000304494.5:c.151-9_151del		p.X51_splice	ENST00000304494	NM_000077.4	51																																														NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971205	21971216	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACCTGCCAGAG	GACCTGCCAGAG	CA			P-0005558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	32	170	0	ENST00000304494.5:c.151-9_153delinsTG		p.X51_splice	ENST00000304494	NM_000077.4	51																																														NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16174572	16174572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	32	353	0	ENST00000375759.3:c.10G>A	p.Glu4Lys	p.E4K	ENST00000375759	NM_015001.2	4	Gaa/Aaa																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18499619	18499619	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	112	491	0	ENST00000266497.5:c.1474C>T	p.Gln492Ter	p.Q492*	ENST00000266497		492	Cag/Tag																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32912918	32912918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1041	138	792	0	ENST00000380152.3:c.4426G>C	p.Asp1476His	p.D1476H	ENST00000380152		1476	Gac/Cac																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5206820	5206820	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	62	376	0	ENST00000357368.4:c.5812G>C	p.Glu1938Gln	p.E1938Q	ENST00000357368	NM_002850.3	1938	Gag/Cag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578515	7578516	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCCAGTTGGCAAAACATCTTGTTGAG			P-0007685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	57	293	0	ENST00000269305.4:c.388_414dup	p.Leu130_Ala138dup	p.L130_A138dup	ENST00000269305	NM_001126112.2	130	-/CTCAACAAGATGTTTTGCCAACTGGCC																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32911001	32911004	+	stop_gained	Nonsense_Mutation	ONP	GAAA	GAAA	CAAT			P-0007685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	115	805	0	ENST00000380152.3:c.2509_2512delinsCAAT	p.Glu837_Lys838delinsGlnTer	p.E837_K838delinsQ*	ENST00000380152		837	GAAAaa/CAATaa																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	121	203	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																													NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58677925	58677948	+	inframe_deletion	In_Frame_Del	DEL	TCCGCGGCCGTCGCCGGCCGCCCT	TCCGCGGCCGTCGCCGGCCGCCCT	-			P-0003581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	124	228	0	ENST00000305921.3:c.153_176delGCGGCCGTCGCCGGCCGCCCTTCC	p.Arg52_Pro59del	p.R52_P59del	ENST00000305921	NM_003620.3	50	ccTCCGCGGCCGTCGCCGGCCGCCCTt/cct																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111471	8111472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	150	289	0	ENST00000346208.3:c.958dupT	p.Cys320LeufsTer32	p.C320Lfs*32	ENST00000346208		319	-/T																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115922	8115923	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCG			P-0003581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	74	185	0	ENST00000346208.3:c.1271_1274dup	p.Ser426AlafsTer82	p.S426Afs*82	ENST00000346208		423	cac/caCCCGc																																													NEWRECORD																																		
RFWD2	64326	MSKCC	GRCh37	1	176015368	176015368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	169	427	0	ENST00000367669.3:c.1370C>T	p.Ala457Val	p.A457V	ENST00000367669	NM_022457.5	457	gCa/gTa																																													NEWRECORD																																		
MYCN	4613	MSKCC	GRCh37	2	16082449	16082449	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	100	329	0	ENST00000281043.3:c.263G>T	p.Trp88Leu	p.W88L	ENST00000281043	NM_005378.4	88	tGg/tTg																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25966882	25966882	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	166	451	0	ENST00000435504.4:c.2324A>G	p.Gln775Arg	p.Q775R	ENST00000435504		775	cAa/cGa																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30730005	30730005	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	94	236	0	ENST00000359013.4:c.1599+2T>C		p.X533_splice	ENST00000359013	NM_001024847.2	533																																														NEWRECORD																																		
GATA2	2624	MSKCC	GRCh37	3	128205667	128205667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	124	433	0	ENST00000341105.2:c.208G>A	p.Val70Ile	p.V70I	ENST00000341105	NM_032638.4	70	Gtc/Atc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	136	391	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187518263	187518263	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	33	156	0	ENST00000441802.2:c.12431A>G	p.Asn4144Ser	p.N4144S	ENST00000441802	NM_005245.3	4144	aAc/aGc																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30670355	30670355	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	255	566	0	ENST00000376406.3:c.6077T>C	p.Leu2026Pro	p.L2026P	ENST00000376406	NM_014641.2	2026	cTa/cCa																																													NEWRECORD																																		
IFNGR1	3459	MSKCC	GRCh37	6	137519568	137519568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	203	497	0	ENST00000367739.4:c.1070C>T	p.Thr357Ile	p.T357I	ENST00000367739	NM_000416.2	357	aCt/aTt																																													NEWRECORD																																		
INHBA	3624	MSKCC	GRCh37	7	41729888	41729888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	161	735	1	ENST00000242208.4:c.641G>A	p.Arg214Gln	p.R214Q	ENST00000242208	NM_002192.2	214	cGg/cAg																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	174	417	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
WT1	7490	MSKCC	GRCh37	11	32456636	32456636	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	32	69	0	ENST00000332351.3:c.256C>A	p.Leu86Met	p.L86M	ENST00000332351	NM_024426.4	86	Ctg/Atg																																													NEWRECORD																																		
WT1	7490	MSKCC	GRCh37	11	32456737	32456737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	63	239	0	ENST00000332351.3:c.155G>A	p.Arg52His	p.R52H	ENST00000332351	NM_024426.4	52	cGt/cAt																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118343913	118343913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	171	360	1	ENST00000534358.1:c.2039C>T	p.Ser680Leu	p.S680L	ENST00000534358	NM_005933.3	680	tCg/tTg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49438528	49438528	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	131	389	0	ENST00000301067.7:c.4962A>C	p.Glu1654Asp	p.E1654D	ENST00000301067	NM_003482.3	1654	gaA/gaC																																													NEWRECORD																																		
HNF1A	6927	MSKCC	GRCh37	12	121437073	121437073	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	71	390	0	ENST00000257555.6:c.1504C>A	p.Leu502Ile	p.L502I	ENST00000257555		502	Ctc/Atc																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	29041174	29041174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1141	199	509	0	ENST00000282397.4:c.254G>A	p.Gly85Asp	p.G85D	ENST00000282397	NM_002019.4	85	gGc/gAc																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42052629	42052629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1312	335	717	2	ENST00000219905.7:c.7300C>T	p.Arg2434Trp	p.R2434W	ENST00000219905	NM_001164273.1	2434	Cgg/Tgg																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81953118	81953118	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	185	675	1	ENST00000359376.3:c.2084T>C	p.Ile695Thr	p.I695T	ENST00000359376	NM_002661.3	695	aTc/aCc																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56434959	56434959	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	205	541	0	ENST00000407977.2:c.2178G>A	p.Trp726Ter	p.W726*	ENST00000407977		726	tgG/tgA																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56436149	56436149	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	218	564	0	ENST00000407977.2:c.988C>T	p.Arg330Ter	p.R330*	ENST00000407977		330	Cga/Tga																																													NEWRECORD																																		
PRKAR1A	5573	MSKCC	GRCh37	17	66519896	66519896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	179	433	1	ENST00000358598.2:c.379G>A	p.Ala127Thr	p.A127T	ENST00000358598	NM_212471.2	127	Gct/Act																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42796615	42796615	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	73	252	0	ENST00000575354.2:c.3172T>C	p.Ser1058Pro	p.S1058P	ENST00000575354	NM_015125.3	1058	Tca/Cca																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40730876	40730876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	96	345	1	ENST00000373198.4:c.3659G>A	p.Arg1220Gln	p.R1220Q	ENST00000373198	NM_133170.3	1220	cGg/cAg																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151874013	151874013	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	232	573	0	ENST00000262189.6:c.8525delA	p.Asn2842MetfsTer21	p.N2842Mfs*21	ENST00000262189	NM_170606.2	2842	aAt/at																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139412308	139412308	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	176	421	0	ENST00000277541.6:c.1337del	p.Gly446AlafsTer185	p.G446Afs*185	ENST00000277541	NM_017617.3	446	gGc/gc																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66286237	66286238	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	169	537	0	ENST00000273854.3:c.1448dup	p.Asn483LysfsTer21	p.N483Kfs*21	ENST00000273854	NM_004439.5	483	aac/aaAc																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99439989	99439989	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	126	325	0	ENST00000268035.6:c.957del	p.Met319IlefsTer66	p.M319Ifs*66	ENST00000268035	NM_000875.3	319	atG/at																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	56	296	0	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																													NEWRECORD																																		
XRCC2	7516	MSKCC	GRCh37	7	152345769	152345769	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	205	474	0	ENST00000359321.1:c.801del	p.Lys267AsnfsTer30	p.K267Nfs*30	ENST00000359321	NM_005431.1	267	aaA/aa																																													NEWRECORD																																		
HLA-A	3105	MSKCC	GRCh37	6	29910372	29910372	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	62	429	0	ENST00000376809.5:c.46delG	p.Ala16ProfsTer4	p.A16Pfs*4	ENST00000376809	NM_002116.7	14	tcG/tc																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	62	314	0	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	43	240	0	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108151825	108151825	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	160	331	0	ENST00000278616.4:c.3510del	p.Lys1170AsnfsTer11	p.K1170Nfs*11	ENST00000278616	NM_000051.3	1169	gAa/ga																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56177558	56177558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	114	277	0	ENST00000399503.3:c.2531C>T	p.Ser844Phe	p.S844F	ENST00000399503	NM_005921.1	844	tCc/tTc																																													NEWRECORD																																		
TRAF7	84231	MSKCC	GRCh37	16	2220634	2220634	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	154	761	0	ENST00000326181.6:c.251G>T	p.Arg84Leu	p.R84L	ENST00000326181	NM_032271.2	84	cGc/cTc																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70446398	70446398	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	105	532	2	ENST00000373644.4:c.5338C>T	p.Arg1780Ter	p.R1780*	ENST00000373644	NM_030625.2	1780	Cga/Tga																																													NEWRECORD																																		
PIK3R3	8503	MSKCC	GRCh37	1	46531793	46531793	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	81	383	0	ENST00000262741.5:c.554A>G	p.His185Arg	p.H185R	ENST00000262741	NM_003629.3	185	cAc/cGc																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108203493	108203493	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	74	184	0	ENST00000278616.4:c.7793G>T	p.Arg2598Leu	p.R2598L	ENST00000278616	NM_000051.3	2598	cGa/cTa																																													NEWRECORD																																		
CBL	867	MSKCC	GRCh37	11	119145620	119145620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	185	411	1	ENST00000264033.4:c.826G>A	p.Glu276Lys	p.E276K	ENST00000264033	NM_005188.3	276	Gaa/Aaa																																													NEWRECORD																																		
ETV6	2120	MSKCC	GRCh37	12	12022436	12022436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1479	278	959	3	ENST00000396373.4:c.542G>T	p.Arg181Leu	p.R181L	ENST00000396373	NM_001987.4	181	cGc/cTc																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061174	38061174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	55	248	0	ENST00000250448.2:c.815C>T	p.Pro272Leu	p.P272L	ENST00000250448	NM_004496.3	272	cCg/cTg																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72831843	72831843	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1205	68	697	0	ENST00000268489.5:c.4738T>C	p.Ser1580Pro	p.S1580P	ENST00000268489	NM_006885.3	1580	Tca/Cca																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89351871	89351871	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1276	192	757	0	ENST00000301030.4:c.1079C>G	p.Pro360Arg	p.P360R	ENST00000301030	NM_001256183.1	360	cCg/cGg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	103	535	2	ENST00000269305.4:c.994-1G>T		p.X332_splice	ENST00000269305	NM_001126112.2	332																																														NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578199	7578199	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1313	162	739	0	ENST00000269305.4:c.650T>A	p.Val217Glu	p.V217E	ENST00000269305	NM_001126112.2	217	gTg/gAg																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37881623	37881623	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1248	150	587	0	ENST00000269571.5:c.2693G>T	p.Arg898Leu	p.R898L	ENST00000269571		898	cGg/cTg																																													NEWRECORD																																		
MALT1	10892	MSKCC	GRCh37	18	56409195	56409195	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	85	418	1	ENST00000348428.3:c.1702G>T	p.Glu568Ter	p.E568*	ENST00000348428	NM_006785.3	568	Gaa/Taa																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1221238	1221239	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	541	680	0	ENST00000326873.7:c.761_762insT	p.Phe255LeufsTer11	p.F255Lfs*11	ENST00000326873	NM_000455.4	254	ccc/ccTc																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	30143056	30143056	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1220	119	814	2	ENST00000389048.3:c.470C>A	p.Pro157His	p.P157H	ENST00000389048	NM_004304.4	157	cCc/cAc																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89448585	89448585	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	95	507	0	ENST00000336596.2:c.1549T>C	p.Tyr517His	p.Y517H	ENST00000336596	NM_005233.5	517	Tat/Cat																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55961815	55961815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	76	329	0	ENST00000263923.4:c.2746G>T	p.Val916Leu	p.V916L	ENST00000263923	NM_002253.2	916	Gtg/Ttg																																													NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35876344	35876344	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	81	430	0	ENST00000303115.3:c.1136C>A	p.Ala379Asp	p.A379D	ENST00000303115	NM_002185.3	379	gCc/gAc																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55227848	55227848	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	43	283	0	ENST00000275493.2:c.1315G>C	p.Ala439Pro	p.A439P	ENST00000275493	NM_005228.3	439	Gca/Cca																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55371741	55371741	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	75	513	0	ENST00000297316.4:c.431A>T	p.Gln144Leu	p.Q144L	ENST00000297316	NM_022454.3	144	cAg/cTg																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135798881	135798881	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	28	160	0	ENST00000298552.3:c.364-2A>G		p.X122_splice	ENST00000298552	NM_001162426.1	122																																														NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70360540	70360540	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1202	328	809	0	ENST00000374080.3:c.6100A>T	p.Ser2034Cys	p.S2034C	ENST00000374080		2034	Agt/Tgt																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295242	1295242	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1361	191	346	0				ENST00000310581	NM_198253.2																																															NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57485115	57485115	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754097818		P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1347	204	504	0	ENST00000371085.3:c.949C>T	p.Arg317Cys	p.R317C	ENST00000371085	NM_000516.4	317	Cgc/Tgc																																													NEWRECORD																																		
LATS2	26524	MSKCC	GRCh37	13	21562747	21562747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	55	193	0	ENST00000382592.4:c.1172G>A	p.Arg391His	p.R391H	ENST00000382592	NM_014572.2	391	cGc/cAc																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108164040	108164040	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	125	242	1	ENST00000278616.4:c.4612G>T	p.Val1538Leu	p.V1538L	ENST00000278616	NM_000051.3	1538	Gta/Tta																																													NEWRECORD																																		
SDHB	6390	MSKCC	GRCh37	1	17355225	17355225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	170	400	0	ENST00000375499.3:c.293G>C	p.Cys98Ser	p.C98S	ENST00000375499	NM_003000.2	98	tGt/tCt																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29474059	29474059	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1204	162	641	1	ENST00000389048.3:c.2116C>T	p.Gln706Ter	p.Q706*	ENST00000389048	NM_004304.4	706	Cag/Tag																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212248607	212248607	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			996	128	552	0	ENST00000342788.4:c.3660G>T	p.Glu1220Asp	p.E1220D	ENST00000342788	NM_005235.2	1220	gaG/gaT																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225343003	225343003	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1427	152	993	0	ENST00000264414.4:c.2089G>C	p.Asp697His	p.D697H	ENST00000264414	NM_003590.4	697	Gac/Cac																																													NEWRECORD																																		
MLH1	4292	MSKCC	GRCh37	3	37067398	37067398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	282	486	0	ENST00000231790.2:c.1309C>T	p.Pro437Ser	p.P437S	ENST00000231790	NM_000249.3	437	Cct/Tct																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66467695	66467695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	274	482	1	ENST00000273854.3:c.574G>A	p.Val192Ile	p.V192I	ENST00000273854	NM_004439.5	192	Gtt/Att																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153244158	153244158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	173	689	0	ENST00000281708.4:c.1999G>T	p.Gly667Trp	p.G667W	ENST00000281708	NM_033632.3	667	Ggg/Tgg																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1293731	1293731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1359	192	369	0	ENST00000310581.5:c.1270G>T	p.Gly424Cys	p.G424C	ENST00000310581	NM_198253.2	424	Ggt/Tgt																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	93964477	93964477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	372	803	0	ENST00000369303.4:c.2420C>T	p.Ala807Val	p.A807V	ENST00000369303	NM_004440.3	807	gCc/gTc																																													NEWRECORD																																		
PRDM1	639	MSKCC	GRCh37	6	106554918	106554918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	249	476	1	ENST00000369096.4:c.2035C>T	p.Arg679Cys	p.R679C	ENST00000369096	NM_001198.3	679	Cgt/Tgt																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152415582	152415582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	354	662	0	ENST00000206249.3:c.1432G>A	p.Val478Ile	p.V478I	ENST00000206249	NM_000125.3	478	Gtc/Atc																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968281	2968281	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1085	651	551	1	ENST00000396946.4:c.1705G>T	p.Gly569Ter	p.G569*	ENST00000396946	NM_032415.4	569	Gga/Tga																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2978345	2978345	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	562	552	0	ENST00000396946.4:c.985G>C	p.Glu329Gln	p.E329Q	ENST00000396946	NM_032415.4	329	Gag/Cag																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55221846	55221846	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1421	550	765	0	ENST00000275493.2:c.889+1G>T		p.X297_splice	ENST00000275493	NM_005228.3	297																																														NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81372707	81372707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	482	636	2	ENST00000222390.5:c.827C>A	p.Pro276His	p.P276H	ENST00000222390	NM_000601.4	276	cCt/cAt																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106508596	106508596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	179	303	0	ENST00000359195.3:c.590C>A	p.Ala197Asp	p.A197D	ENST00000359195	NM_002649.2	197	gCc/gAc																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151917629	151917629	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	69	333	0	ENST00000262189.6:c.3691G>T	p.Gly1231Cys	p.G1231C	ENST00000262189	NM_170606.2	1231	Ggt/Tgt																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21970994	21970994	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	123	455	0	ENST00000304494.5:c.364G>T	p.Gly122Cys	p.G122C	ENST00000304494	NM_000077.4	122	Ggc/Tgc																																													NEWRECORD																																		
NTRK2	4915	MSKCC	GRCh37	9	87339151	87339151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	108	505	0	ENST00000277120.3:c.733C>T	p.His245Tyr	p.H245Y	ENST00000277120		245	Cac/Tac																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8106040	8106040	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	98	393	0	ENST00000346208.3:c.860G>T	p.Cys287Phe	p.C287F	ENST00000346208		287	tGc/tTc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111517	8111517	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	550	578	0	ENST00000346208.3:c.1003G>T	p.Asp335Tyr	p.D335Y	ENST00000346208		335	Gac/Tac																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63852473	63852473	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1359	313	463	0	ENST00000279873.7:c.3251G>T	p.Gly1084Val	p.G1084V	ENST00000279873	NM_032199.2	1084	gGg/gTg																																													NEWRECORD																																		
FGF4	2249	MSKCC	GRCh37	11	69589785	69589785	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	47	173	1	ENST00000168712.1:c.68G>A	p.Trp23Ter	p.W23*	ENST00000168712	NM_002007.2	23	tGg/tAg																																													NEWRECORD																																		
MRE11A	4361	MSKCC	GRCh37	11	94180397	94180397	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1862	165	633	0	ENST00000323929.3:c.1771C>G	p.Gln591Glu	p.Q591E	ENST00000323929	NM_005591.3	591	Caa/Gaa																																													NEWRECORD																																		
CDK4	1019	MSKCC	GRCh37	12	58145491	58145491	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1197	1308	358	0	ENST00000257904.6:c.10T>C	p.Ser4Pro	p.S4P	ENST00000257904	NM_000075.3	4	Tct/Cct																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73352440	73352440	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	158	628	0	ENST00000377767.4:c.465G>T	p.Trp155Cys	p.W155C	ENST00000377767	NM_014953.3	155	tgG/tgT																																													NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91290653	91290653	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	107	596	0	ENST00000355112.3:c.31G>C	p.Glu11Gln	p.E11Q	ENST00000355112	NM_000057.2	11	Gag/Cag																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72831747	72831747	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1281	221	961	0	ENST00000268489.5:c.4834G>C	p.Glu1612Gln	p.E1612Q	ENST00000268489	NM_006885.3	1612	Gag/Cag																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37682395	37682395	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1137	103	438	0	ENST00000447079.4:c.3586A>G	p.Thr1196Ala	p.T1196A	ENST00000447079	NM_015083.1	1196	Acc/Gcc																																													NEWRECORD																																		
BCL2	596	MSKCC	GRCh37	18	60985608	60985608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	55	183	0	ENST00000333681.4:c.292C>T	p.Arg98Cys	p.R98C	ENST00000333681		98	Cgc/Tgc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5219469	5219469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	380	471	0	ENST00000357368.4:c.3775G>T	p.Ala1259Ser	p.A1259S	ENST00000357368	NM_002850.3	1259	Gcc/Tcc																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15376310	15376310	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	319	632	0	ENST00000263377.2:c.704A>T	p.Gln235Leu	p.Q235L	ENST00000263377	NM_058243.2	235	cAg/cTg																																													NEWRECORD																																		
CEBPA	1050	MSKCC	GRCh37	19	33793072	33793072	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1508	116	453	0	ENST00000498907.2:c.249G>C	p.Gln83His	p.Q83H	ENST00000498907	NM_004364.3	83	caG/caC																																													NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31384656	31384656	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1246	992	649	2	ENST00000328111.2:c.1358G>T	p.Gly453Val	p.G453V	ENST00000328111	NM_006892.3	453	gGg/gTg																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57485103	57485103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1425	251	528	1	ENST00000371085.3:c.937C>T	p.Pro313Ser	p.P313S	ENST00000371085	NM_000516.4	313	Cca/Tca																																													NEWRECORD																																		
TMPRSS2	7113	MSKCC	GRCh37	21	42845319	42845319	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	143	532	0	ENST00000398585.3:c.943G>C	p.Val315Leu	p.V315L	ENST00000398585	NM_001135099.1	315	Gtc/Ctc																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	41999995	41999996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	452	879	0	ENST00000219905.7:c.2261dup	p.Leu754PhefsTer6	p.L754Ffs*6	ENST00000219905	NM_001164273.1	753	cct/ccTt																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53224186	53224195	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTTCTCCA	TCCTTCTCCA	-			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	138	364	0	ENST00000375401.3:c.3356_3365del	p.Met1119SerfsTer25	p.M1119Sfs*25	ENST00000375401	NM_004187.3	1119	aTGGAGAAGGAg/ag																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	163	490	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971107	21971107	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			34	52	194	0	ENST00000304494.5:c.251A>G	p.Asp84Gly	p.D84G	ENST00000304494	NM_000077.4	84	gAc/gGc																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41545060	41545060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	52	490	4	ENST00000263253.7:c.2260C>T	p.Arg754Cys	p.R754C	ENST00000263253	NM_001429.3	754	Cgt/Tgt																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11190603	11190603	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	36	434	0	ENST00000361445.4:c.5596C>T	p.Gln1866Ter	p.Q1866*	ENST00000361445	NM_004958.3	1866	Cag/Tag																																													NEWRECORD																																		
RFWD2	64326	MSKCC	GRCh37	1	176050349	176050349	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	12	539	2	ENST00000367669.3:c.1216C>T	p.Arg406Ter	p.R406*	ENST00000367669	NM_022457.5	406	Cga/Tga																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32185013	32185013	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	22	548	0	ENST00000375023.3:c.1655T>C	p.Ile552Thr	p.I552T	ENST00000375023	NM_004557.3	552	aTc/aCc																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117710744	117710744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	29	465	0	ENST00000368508.3:c.1528C>T	p.Leu510Phe	p.L510F	ENST00000368508	NM_002944.2	510	Ctt/Ttt																																													NEWRECORD																																		
PMS2	5395	MSKCC	GRCh37	7	6043624	6043624	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	13	238	0	ENST00000265849.7:c.229G>T	p.Glu77Ter	p.E77*	ENST00000265849	NM_000535.5	77	Gaa/Taa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578196	7578197	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0010235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	83	588	0	ENST00000269305.4:c.651_652dup	p.Val218GlyfsTer30	p.V218Gfs*30	ENST00000269305	NM_001126112.2	218	gtg/gGGtg																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1213	253	583	6	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	146	355	0	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	206	345	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	107	229	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
HNF1A	6927	MSKCC	GRCh37	12	121434070	121434070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	267	541	5	ENST00000257555.6:c.961C>T	p.Arg321Cys	p.R321C	ENST00000257555		321	Cgc/Tgc																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	159	304	3	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	272	446	1	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																													NEWRECORD																																		
SYK	6850	MSKCC	GRCh37	9	93639995	93639995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	161	348	0	ENST00000375746.1:c.1324G>A	p.Glu442Lys	p.E442K	ENST00000375746	NM_001174167.1	442	Gag/Aag																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63533905	63533905	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	165	277	0	ENST00000307078.5:c.1249delG	p.Ala417ArgfsTer41	p.A417Rfs*41	ENST00000307078	NM_004655.3	417	Gcg/cg																																													NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35875627	35875627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	150	311	0	ENST00000303115.3:c.814G>A	p.Val272Ile	p.V272I	ENST00000303115	NM_002185.3	272	Gta/Ata																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56440904	56440904	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1458799446		P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	287	526	0	ENST00000407977.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000407977		145	Cga/Tga																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	16	167	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42799098	42799098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	147	365	0	ENST00000575354.2:c.4586delC	p.Pro1529LeufsTer91	p.P1529Lfs*91	ENST00000575354	NM_015125.3	1528	Ccc/cc																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	248	596	0	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15272337	15272337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs776990686		P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	129	281	2	ENST00000263388.2:c.6102del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2034	ccC/cc																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67588981	67588981	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	152	232	0	ENST00000274335.5:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000274335		358	Cga/Tga																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86679546	86679546	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	109	177	0	ENST00000274376.6:c.2707C>T	p.Arg903Ter	p.R903*	ENST00000274376	NM_002890.2	903	Cga/Tga																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70117594	70117594	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	203	424	0	ENST00000245479.2:c.66del	p.Ser23AlafsTer38	p.S23Afs*38	ENST00000245479	NM_000346.3	21	gCc/gc																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47703538	47703538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63749932		P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	216	476	2	ENST00000233146.2:c.2038C>T	p.Arg680Ter	p.R680*	ENST00000233146	NM_000251.2	680	Cga/Tga																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106513012	106513012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	117	302	0	ENST00000359195.3:c.2026G>A	p.Ala676Thr	p.A676T	ENST00000359195	NM_002649.2	676	Gcc/Acc																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2210737	2210737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	190	532	1	ENST00000398665.3:c.1234G>A	p.Gly412Arg	p.G412R	ENST00000398665	NM_032482.2	412	Ggg/Agg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27099103	27099103	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	161	359	0	ENST00000324856.7:c.3524del	p.Pro1175HisfsTer5	p.P1175Hfs*5	ENST00000324856	NM_006015.4	1173	atC/at																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372205	55372205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	49	131	0	ENST00000297316.4:c.895G>A	p.Ala299Thr	p.A299T	ENST00000297316	NM_022454.3	299	Gcg/Acg																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16262680	16262680	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	115	254	0	ENST00000375759.3:c.9950delC	p.Pro3317ArgfsTer83	p.P3317Rfs*83	ENST00000375759	NM_015001.2	3315	caC/ca																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435815	56435815	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	122	218	0	ENST00000407977.2:c.1322delC	p.Pro441LeufsTer61	p.P441Lfs*61	ENST00000407977		441	cCt/ct																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	201	379	0	ENST00000245479.2:c.916delG	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	271	649	6	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																													NEWRECORD																																		
YES1	7525	MSKCC	GRCh37	18	745962	745963	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	94	276	0	ENST00000314574.4:c.559_560delAG	p.Ser187Ter	p.S187*	ENST00000314574	NM_005433.3	187	AGt/t																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11168304	11168304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	177	405	0	ENST00000361445.4:c.7568C>T	p.Thr2523Met	p.T2523M	ENST00000361445	NM_004958.3	2523	aCg/aTg																																													NEWRECORD																																		
IKBKE	9641	MSKCC	GRCh37	1	206658344	206658344	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139758641		P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	128	268	0	ENST00000367120.3:c.1438G>A	p.Val480Met	p.V480M	ENST00000367120	NM_014002.3	480	Gtg/Atg																																													NEWRECORD																																		
FH	2271	MSKCC	GRCh37	1	241680522	241680522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	329	411	0	ENST00000366560.3:c.227C>T	p.Thr76Met	p.T76M	ENST00000366560	NM_000143.3	76	aCg/aTg																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47657020	47657020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	268	438	0	ENST00000233146.2:c.1216C>T	p.Arg406Ter	p.R406*	ENST00000233146	NM_000251.2	406	Cga/Tga																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41275192	41275192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	146	324	0	ENST00000349496.5:c.1358G>A	p.Arg453Gln	p.R453Q	ENST00000349496	NM_001904.3	453	cGg/cAg																																													NEWRECORD																																		
BAP1	8314	MSKCC	GRCh37	3	52436344	52436344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	223	490	0	ENST00000460680.1:c.2150G>A	p.Arg717Gln	p.R717Q	ENST00000460680	NM_004656.3	717	cGg/cAg																																													NEWRECORD																																		
MITF	4286	MSKCC	GRCh37	3	70008432	70008432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	80	167	0	ENST00000352241.4:c.1022G>A	p.Arg341His	p.R341H	ENST00000352241	NM_198159.2	341	cGc/cAc																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71247487	71247487	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	195	410	0	ENST00000318789.4:c.46A>C	p.Ile16Leu	p.I16L	ENST00000318789	NM_032682.5	16	Atc/Ctc																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134880871	134880871	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	210	451	0	ENST00000398015.3:c.1434G>T	p.Glu478Asp	p.E478D	ENST00000398015	NM_004441.4	478	gaG/gaT																																													NEWRECORD																																		
SDHA	6389	MSKCC	GRCh37	5	236606	236606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	107	241	0	ENST00000264932.6:c.1324G>A	p.Ala442Thr	p.A442T	ENST00000264932	NM_004168.2	442	Gcc/Acc																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1282640	1282640	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	215	454	0	ENST00000310581.5:c.1673G>T	p.Arg558Met	p.R558M	ENST00000310581	NM_198253.2	558	aGg/aTg																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38950798	38950798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	90	232	0	ENST00000357387.3:c.3152G>A	p.Arg1051Gln	p.R1051Q	ENST00000357387	NM_152756.3	1051	cGg/cAg																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67589582	67589582	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	122	198	0	ENST00000274335.5:c.1345T>A	p.Leu449Ile	p.L449I	ENST00000274335		449	Tta/Ata																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131953760	131953760	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	96	170	0	ENST00000265335.6:c.3165-2A>G		p.X1055_splice	ENST00000265335		1055																																														NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30679450	30679450	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	242	432	2	ENST00000376406.3:c.2122C>A	p.Leu708Met	p.L708M	ENST00000376406	NM_014641.2	708	Ctg/Atg																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32166817	32166817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	124	292	1	ENST00000375023.3:c.4421G>A	p.Arg1474Gln	p.R1474Q	ENST00000375023	NM_004557.3	1474	cGa/cAa																																													NEWRECORD																																		
CDKN1A	1026	MSKCC	GRCh37	6	36652073	36652073	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	220	490	1	ENST00000244741.5:c.195G>A	p.Trp65Ter	p.W65*	ENST00000244741	NM_000389.4	65	tgG/tgA																																													NEWRECORD																																		
VEGFA	7422	MSKCC	GRCh37	6	43748510	43748510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1563	456	806	2	ENST00000523873.1:c.464G>A	p.Arg155His	p.R155H	ENST00000523873		155	cGc/cAc																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157488310	157488310	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	88	231	0	ENST00000346085.5:c.3016A>C	p.Ser1006Arg	p.S1006R	ENST00000346085	NM_020732.3	1006	Agc/Cgc																																													NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50367296	50367296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	158	282	0	ENST00000331340.3:c.103G>A	p.Glu35Lys	p.E35K	ENST00000331340	NM_006060.4	35	Gag/Aag																																													NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50455073	50455073	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	200	321	0	ENST00000331340.3:c.620G>T	p.Gly207Val	p.G207V	ENST00000331340	NM_006060.4	207	gGc/gTc																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128850377	128850377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	126	285	0	ENST00000249373.3:c.1640G>A	p.Arg547His	p.R547H	ENST00000249373	NM_005631.4	547	cGt/cAt																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151845364	151845364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	169	339	0	ENST00000262189.6:c.13648G>A	p.Val4550Met	p.V4550M	ENST00000262189	NM_170606.2	4550	Gtg/Atg																																													NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90965824	90965824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	84	322	0	ENST00000265433.3:c.1493C>T	p.Pro498Leu	p.P498L	ENST00000265433	NM_002485.4	498	cCc/cTc																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133747523	133747523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	143	342	0	ENST00000318560.5:c.830C>T	p.Thr277Ile	p.T277I	ENST00000318560	NM_005157.4	277	aCc/aTc																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43622146	43622146	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	184	500	0	ENST00000355710.3:c.3163A>G	p.Thr1055Ala	p.T1055A	ENST00000355710	NM_020975.4	1055	Aca/Gca																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114912166	114912166	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1482	426	911	0	ENST00000543371.1:c.1236A>C	p.Gln412His	p.Q412H	ENST00000543371	NM_001198531.1	412	caA/caC																																													NEWRECORD																																		
RPS6KB2	6199	MSKCC	GRCh37	11	67202621	67202621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	165	317	1	ENST00000312629.5:c.1430G>A	p.Arg477His	p.R477H	ENST00000312629	NM_003952.2	477	cGt/cAt																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49420184	49420184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	178	396	1	ENST00000301067.7:c.15565G>A	p.Gly5189Arg	p.G5189R	ENST00000301067	NM_003482.3	5189	Gga/Aga																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49426817	49426817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	126	269	0	ENST00000301067.7:c.11671G>A	p.Ala3891Thr	p.A3891T	ENST00000301067	NM_003482.3	3891	Gct/Act																																													NEWRECORD																																		
SMARCD1	6602	MSKCC	GRCh37	12	50484085	50484085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	188	385	1	ENST00000394963.4:c.935G>A	p.Arg312His	p.R312H	ENST00000394963	NM_003076.4	312	cGt/cAt																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133219839	133219839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	121	286	0	ENST00000320574.5:c.4522C>T	p.Arg1508Cys	p.R1508C	ENST00000320574	NM_006231.2	1508	Cgc/Tgc																																													NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28592606	28592606	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	278	609	0	ENST00000241453.7:c.2539A>G	p.Asn847Asp	p.N847D	ENST00000241453	NM_004119.2	847	Aat/Gat																																													NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105238767	105238767	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs188580689		P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	209	476	0	ENST00000349310.3:c.1195G>A	p.Ala399Thr	p.A399T	ENST00000349310	NM_001014432.1	399	Gcc/Acc																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67457304	67457304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	205	397	0	ENST00000327367.4:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000327367	NM_005902.3	93	cGa/cAa																																													NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91292842	91292842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	179	324	0	ENST00000355112.3:c.344C>T	p.Pro115Leu	p.P115L	ENST00000355112	NM_000057.2	115	cCg/cTg																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72821324	72821324	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1125	280	609	0	ENST00000268489.5:c.10851G>A	p.Trp3617Ter	p.W3617*	ENST00000268489	NM_006885.3	3617	tgG/tgA																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72822285	72822285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1285	406	1071	2	ENST00000268489.5:c.9890C>T	p.Ser3297Leu	p.S3297L	ENST00000268489	NM_006885.3	3297	tCg/tTg																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72832406	72832406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1134	339	776	0	ENST00000268489.5:c.4175C>T	p.Pro1392Leu	p.P1392L	ENST00000268489	NM_006885.3	1392	cCg/cTg																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89348309	89348309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1749	492	1317	1	ENST00000301030.4:c.4641G>T	p.Lys1547Asn	p.K1547N	ENST00000301030	NM_001256183.1	1547	aaG/aaT																																													NEWRECORD																																		
ALOX12B	242	MSKCC	GRCh37	17	7979619	7979619	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140306846		P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	216	419	0	ENST00000319144.4:c.1406G>A	p.Arg469Gln	p.R469Q	ENST00000319144	NM_001139.2	469	cGg/cAg																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15973496	15973496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	203	349	0	ENST00000268712.3:c.4496T>C	p.Met1499Thr	p.M1499T	ENST00000268712	NM_006311.3	1499	aTg/aCg																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1220394	1220394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	181	567	0	ENST00000326873.7:c.487G>A	p.Gly163Ser	p.G163S	ENST00000326873	NM_000455.4	163	Ggc/Agc																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17943427	17943427	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200784656		P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	259	589	0	ENST00000458235.1:c.2581G>A	p.Gly861Arg	p.G861R	ENST00000458235	NM_000215.3	861	Ggg/Agg																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50917119	50917119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	290	892	0	ENST00000440232.2:c.2371C>T	p.Arg791Trp	p.R791W	ENST00000440232	NM_002691.3	791	Cgg/Tgg																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41572305	41572305	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	200	409	0	ENST00000263253.7:c.4834A>G	p.Ile1612Val	p.I1612V	ENST00000263253	NM_001429.3	1612	Att/Gtt																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44929133	44929133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	280	534	1	ENST00000377967.4:c.2233G>A	p.Glu745Lys	p.E745K	ENST00000377967	NM_021140.2	745	Gag/Aag																																													NEWRECORD																																		
ARAF	369	MSKCC	GRCh37	X	47426104	47426104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1211	387	779	0	ENST00000377045.4:c.624G>T	p.Gln208His	p.Q208H	ENST00000377045	NM_001654.4	208	caG/caT																																													NEWRECORD																																		
ARAF	369	MSKCC	GRCh37	X	47428265	47428265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	209	538	1	ENST00000377045.4:c.1225G>A	p.Val409Met	p.V409M	ENST00000377045	NM_001654.4	409	Gtg/Atg																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70347906	70347906	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1285	369	755	0	ENST00000374080.3:c.3145A>G	p.Asn1049Asp	p.N1049D	ENST00000374080		1049	Aac/Gac																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151873929	151873929	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	179	406	0	ENST00000262189.6:c.8609del	p.Leu2870CysfsTer36	p.L2870Cfs*36	ENST00000262189	NM_170606.2	2870	tTg/tg																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98231419	98231420	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	65	177	0	ENST00000331920.6:c.1863_1864del	p.Arg621SerfsTer5	p.R621Sfs*5	ENST00000331920	NM_000264.3	621	agAGtg/agtg																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1270	268	719	0	ENST00000337652.1:c.1561dupC	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49434354	49434354	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	154	359	2	ENST00000301067.7:c.7199del	p.Pro2400LeufsTer26	p.P2400Lfs*26	ENST00000301067	NM_003482.3	2400	cCt/ct																																													NEWRECORD																																		
PIK3C3	5289	MSKCC	GRCh37	18	39617679	39617680	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	144	335	0	ENST00000262039.4:c.1869dup	p.Lys624Ter	p.K624*	ENST00000262039	NM_002647.2	621	-/T																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86564680	86564680	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	164	380	1	ENST00000274376.6:c.416delC	p.Pro139LeufsTer35	p.P139Lfs*35	ENST00000274376	NM_002890.2	138	Ccc/cc																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25991625	25991626	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	158	290	0	ENST00000435504.4:c.616_617del	p.Val206ThrfsTer13	p.V206Tfs*13	ENST00000435504		206	GTa/a																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52643791	52643791	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	197	288	0	ENST00000394830.3:c.2105del	p.Lys702SerfsTer12	p.K702Sfs*12	ENST00000394830	NM_018313.4	702	aAg/ag																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48953741	48953742	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	181	353	0	ENST00000267163.4:c.1346dupG	p.Val450SerfsTer13	p.V450Sfs*13	ENST00000267163	NM_000321.2	448	-/G																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	255	633	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157528276	157528276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1002	86	559	0	ENST00000346085.5:c.6001G>A	p.Glu2001Lys	p.E2001K	ENST00000346085	NM_020732.3	2001	Gag/Aag																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156845922	156845922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1400	171	651	0	ENST00000524377.1:c.1552G>A	p.Glu518Lys	p.E518K	ENST00000524377	NM_002529.3	518	Gag/Aag																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16247363	16247363	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	70	287	0	ENST00000375759.3:c.1636-2A>T		p.X546_splice	ENST00000375759	NM_015001.2	546																																														NEWRECORD																																		
CBL	867	MSKCC	GRCh37	11	119077153	119077153	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	75	276	0	ENST00000264033.4:c.26C>G	p.Ser9Cys	p.S9C	ENST00000264033	NM_005188.3	9	tCt/tGt																																													NEWRECORD																																		
ETV6	2120	MSKCC	GRCh37	12	12006361	12006361	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1264	80	488	1	ENST00000396373.4:c.329G>T	p.Gly110Val	p.G110V	ENST00000396373	NM_001987.4	110	gGt/gTt																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32900403	32900403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	102	607	0	ENST00000380152.3:c.500C>T	p.Thr167Ile	p.T167I	ENST00000380152		167	aCa/aTa																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38060949	38060949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	140	273	0	ENST00000250448.2:c.1040C>T	p.Ser347Leu	p.S347L	ENST00000250448	NM_004496.3	347	tCg/tTg																																													NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	396698	396698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	96	538	0	ENST00000262320.3:c.328G>T	p.Gly110Cys	p.G110C	ENST00000262320	NM_003502.3	110	Ggc/Tgc																																													NEWRECORD																																		
ERCC4	2072	MSKCC	GRCh37	16	14022087	14022087	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	80	331	0	ENST00000311895.7:c.787G>C	p.Asp263His	p.D263H	ENST00000311895	NM_005236.2	263	Gac/Cac																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41226500	41226500	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	180	445	0	ENST00000357654.3:c.4523G>A	p.Trp1508Ter	p.W1508*	ENST00000357654	NM_007294.3	1508	tGg/tAg																																													NEWRECORD																																		
AKT2	208	MSKCC	GRCh37	19	40742002	40742002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1556	271	425	0	ENST00000392038.2:c.970G>T	p.Asp324Tyr	p.D324Y	ENST00000392038	NM_001626.4	324	Gac/Tac																																													NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185181353	185181353	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1192	85	527	0	ENST00000265026.3:c.1294G>T	p.Glu432Ter	p.E432*	ENST00000265026	NM_004721.4	432	Gaa/Taa																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176707641	176707641	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	106	434	0	ENST00000439151.2:c.5698A>G	p.Thr1900Ala	p.T1900A	ENST00000439151	NM_022455.4	1900	Act/Gct																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180045806	180045806	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	100	546	0	ENST00000261937.6:c.2965G>T	p.Glu989Ter	p.E989*	ENST00000261937	NM_182925.4	989	Gag/Tag																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116339262	116339262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1103	153	614	0	ENST00000397752.3:c.124C>T	p.Gln42Ter	p.Q42*	ENST00000397752	NM_000245.2	42	Cag/Tag																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44733177	44733177	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	63	531	0	ENST00000377967.4:c.169T>C	p.Phe57Leu	p.F57L	ENST00000377967	NM_021140.2	57	Ttt/Ctt																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76949368	76949369	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1316	77	767	0	ENST00000373344.5:c.428_429delinsTT	p.Gly143Val	p.G143V	ENST00000373344	NM_000489.3	143	gGG/gTT																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0008068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	362	190	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0008068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	534	412	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																													NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0008068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	236	295	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42791533	42791533	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1318	402	382	0	ENST00000575354.2:c.514C>T	p.Gln172Ter	p.Q172*	ENST00000575354	NM_015125.3	172	Cag/Tag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	595	398	0	ENST00000269305.4:c.430del	p.Gln144SerfsTer26	p.Q144Sfs*26	ENST00000269305	NM_001126112.2	144	Cag/ag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002155-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			586	80	182	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002155-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			416	105	225	1	ENST00000269305.4:c.644G>A	p.Ser215Asn	p.S215N	ENST00000269305	NM_001126112.2	215	aGt/aAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175492	112175493	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002155-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			317	114	158	0	ENST00000257430.4:c.4203dup	p.Ala1402CysfsTer7	p.A1402Cfs*7	ENST00000257430	NM_000038.5	1401	att/aTtt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	58	739	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0014190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	32	369	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45394805	45394805	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	35	287	0	ENST00000262160.6:c.544C>T	p.Arg182Ter	p.R182*	ENST00000262160	NM_005901.5	182	Cga/Tga																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45395776	45395776	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	32	305	1	ENST00000262160.6:c.358C>T	p.Arg120Ter	p.R120*	ENST00000262160	NM_005901.5	120	Cga/Tga																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0014190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	48	517	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67457226	67457227	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	TGGCAGGTCCCTGGATGGCCGG			P-0014190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	44	498	0	ENST00000327367.4:c.207-5_223dup		p.X69_splice	ENST00000327367	NM_005902.3	69																																														NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59793405	59793405	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	34	452	0	ENST00000259008.2:c.2399A>G	p.Tyr800Cys	p.Y800C	ENST00000259008	NM_032043.2	800	tAc/tGc																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48593520	48593520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	28	270	0	ENST00000342988.3:c.1271A>T	p.Asp424Val	p.D424V	ENST00000342988	NM_005359.5	424	gAt/gTt																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48593532	48593533	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0014190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	17	241	0	ENST00000342988.3:c.1284_1285del	p.Lys428AsnfsTer11	p.K428Nfs*11	ENST00000342988	NM_005359.5	428	aAG/a																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198273230	198273230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	65	555	2	ENST00000335508.6:c.980C>T	p.Pro327Leu	p.P327L	ENST00000335508	NM_012433.2	327	cCg/cTg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173893	112173893	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	37	303	0	ENST00000257430.4:c.2602G>T	p.Glu868Ter	p.E868*	ENST00000257430	NM_000038.5	868	Gaa/Taa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	59	373	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007620	45007620	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs111947448		P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	46	279	0	ENST00000558401.1:c.68-1G>T		p.X23_splice	ENST00000558401	NM_004048.2	23																																														NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	111	475	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173847	112173848	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	88	432	0	ENST00000257430.4:c.2563_2564dup	p.Arg856AsnfsTer6	p.R856Nfs*6	ENST00000257430	NM_000038.5	852	-/GA																																													NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	343507	343507	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	135	561	1	ENST00000262320.3:c.2167C>T	p.Arg723Ter	p.R723*	ENST00000262320	NM_003502.3	723	Cga/Tga																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	94	397	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																													NEWRECORD																																		
PAK1	5058	MSKCC	GRCh37	11	77090327	77090327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	145	613	0	ENST00000356341.3:c.398C>T	p.Ser133Leu	p.S133L	ENST00000356341	NM_002576.4	133	tCg/tTg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	103	399	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																													NEWRECORD																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52716217	52716217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	126	449	3	ENST00000322088.6:c.661C>T	p.Arg221Trp	p.R221W	ENST00000322088	NM_014225.5	221	Cgg/Tgg																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	124	514	2	ENST00000264010.4:c.2070delA	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2133801	2133801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	110	435	0	ENST00000219476.3:c.3989C>T	p.Thr1330Met	p.T1330M	ENST00000219476	NM_000548.3	1330	aCg/aTg																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	135	577	4	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3832688	3832688	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	118	449	0	ENST00000262367.5:c.1570delC	p.Leu524TrpfsTer6	p.L524Wfs*6	ENST00000262367	NM_004380.2	524	Ctg/tg																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145737820	145737820	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs36023964		P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	81	371	1	ENST00000428558.2:c.3010C>T	p.Arg1004Trp	p.R1004W	ENST00000428558	NM_004260.3	1004	Cgg/Tgg																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1041	226	752	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16262654	16262654	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	54	274	1	ENST00000375759.3:c.9919C>T	p.Arg3307Trp	p.R3307W	ENST00000375759	NM_015001.2	3307	Cgg/Tgg																																													NEWRECORD																																		
MITF	4286	MSKCC	GRCh37	3	69990480	69990480	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	85	393	0	ENST00000352241.4:c.760A>G	p.Thr254Ala	p.T254A	ENST00000352241	NM_198159.2	254	Acg/Gcg																																													NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803222	1803222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	123	552	1	ENST00000260795.2:c.574G>A	p.Gly192Ser	p.G192S	ENST00000260795		192	Ggc/Agc																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187628571	187628571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	159	580	2	ENST00000441802.2:c.2411C>T	p.Ala804Val	p.A804V	ENST00000441802	NM_005245.3	804	gCg/gTg																																													NEWRECORD																																		
FGFR4	2264	MSKCC	GRCh37	5	176517774	176517774	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	187	727	1	ENST00000292408.4:c.384G>T	p.Glu128Asp	p.E128D	ENST00000292408	NM_213647.1	128	gaG/gaT																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32170313	32170313	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	104	481	0	ENST00000375023.3:c.3295G>T	p.Gly1099Ter	p.G1099*	ENST00000375023	NM_004557.3	1099	Gga/Tga																																													NEWRECORD																																		
CCND3	896	MSKCC	GRCh37	6	41904359	41904359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	102	462	0	ENST00000372991.4:c.649G>A	p.Ala217Thr	p.A217T	ENST00000372991	NM_001760.3	217	Gcc/Acc																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2976706	2976706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	114	351	0	ENST00000396946.4:c.1306C>T	p.Arg436Trp	p.R436W	ENST00000396946	NM_032415.4	436	Cgg/Tgg																																													NEWRECORD																																		
SYK	6850	MSKCC	GRCh37	9	93627378	93627378	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs201994789		P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	83	500	0	ENST00000375746.1:c.845C>T	p.Ala282Val	p.A282V	ENST00000375746	NM_001174167.1	282	gCg/gTg																																													NEWRECORD																																		
KLF4	9314	MSKCC	GRCh37	9	110249887	110249887	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	34	214	0	ENST00000374672.4:c.788T>C	p.Val263Ala	p.V263A	ENST00000374672	NM_004235.4	263	gTg/gCg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49437199	49437199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	127	504	1	ENST00000301067.7:c.5480C>T	p.Pro1827Leu	p.P1827L	ENST00000301067	NM_003482.3	1827	cCa/cTa																																													NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	339492	339492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	151	645	2	ENST00000262320.3:c.2410G>A	p.Ala804Thr	p.A804T	ENST00000262320	NM_003502.3	804	Gct/Act																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3819346	3819346	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	84	279	1	ENST00000262367.5:c.2889G>T	p.Gln963His	p.Q963H	ENST00000262367	NM_004380.2	963	caG/caT																																													NEWRECORD																																		
PIK3C3	5289	MSKCC	GRCh37	18	39584482	39584482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	77	447	1	ENST00000262039.4:c.1147C>T	p.Arg383Trp	p.R383W	ENST00000262039	NM_002647.2	383	Cgg/Tgg																																													NEWRECORD																																		
TCF3	6929	MSKCC	GRCh37	19	1612346	1612346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	191	700	0	ENST00000344749.5:c.1673G>A	p.Arg558His	p.R558H	ENST00000344749	NM_001136139.2	558	cGc/cAc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5223251	5223251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	77	238	1	ENST00000357368.4:c.2552G>A	p.Arg851His	p.R851H	ENST00000357368	NM_002850.3	851	cGc/cAc																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15350470	15350470	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	73	311	0	ENST00000263377.2:c.3445C>T	p.Arg1149Trp	p.R1149W	ENST00000263377	NM_058243.2	1149	Cgg/Tgg																																													NEWRECORD																																		
ERCC2	2068	MSKCC	GRCh37	19	45858008	45858008	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199778239		P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	101	547	0	ENST00000391945.4:c.1645G>A	p.Val549Met	p.V549M	ENST00000391945	NM_000400.3	549	Gtg/Atg																																													NEWRECORD																																		
TCF3	6929	MSKCC	GRCh37	19	1620992	1620992	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			938	190	677	0	ENST00000344749.5:c.1068del	p.Val357TrpfsTer37	p.V357Wfs*37	ENST00000344749	NM_001136139.2	356	ccC/cc																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3807363	3807364	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	99	423	0	ENST00000262367.5:c.3623dupC	p.Gln1209ThrfsTer25	p.Q1209Tfs*25	ENST00000262367	NM_004380.2	1208	cca/ccCa																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153251985	153251986	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	99	449	0	ENST00000281708.4:c.1020dup	p.Val341SerfsTer22	p.V341Sfs*22	ENST00000281708	NM_033632.3	340	-/A																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	150005515	150005515	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	81	399	1	ENST00000253339.5:c.710del	p.Pro237HisfsTer6	p.P237Hfs*6	ENST00000253339		237	cCa/ca																																													NEWRECORD																																		
HIST1H2BD	3017	MSKCC	GRCh37	6	26158465	26158467	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs766586530		P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	127	441	0	ENST00000289316.2:c.73_75del	p.Lys25del	p.K25del	ENST00000289316	NM_138720.2	23	cAGAag/cag																																													NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40362311	40362311	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	152	725	4	ENST00000293328.3:c.1784del	p.Leu595TrpfsTer4	p.L595Wfs*4	ENST00000293328	NM_012448.3	595	tTg/tg																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145737107	145737109	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	126	546	1	ENST00000428558.2:c.3457_3459delGAG	p.Glu1153del	p.E1153del	ENST00000428558	NM_004260.3	1153	GAG/-																																													NEWRECORD																																		
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	36	239	1	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37686901	37686901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	146	422	0	ENST00000447079.4:c.3810del	p.Gly1271AspfsTer23	p.G1271Dfs*23	ENST00000447079	NM_015083.1	1269	Ccc/cc																																													NEWRECORD																																		
CBL	867	MSKCC	GRCh37	11	119156070	119156070	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	153	544	0	ENST00000264033.4:c.1739del	p.Pro580LeufsTer35	p.P580Lfs*35	ENST00000264033	NM_005188.3	579	Ccc/cc																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106162524	106162524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	105	366	1	ENST00000380013.4:c.3442delT	p.Tyr1148IlefsTer4	p.Y1148Ifs*4	ENST00000380013	NM_001127208.2	1146	ccT/cc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	87	377	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0012533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	120	642	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372220	55372220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	28	130	0	ENST00000297316.4:c.910G>A	p.Gly304Arg	p.G304R	ENST00000297316	NM_022454.3	304	Ggg/Agg																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55151646	55151647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	84	438	0	ENST00000257290.5:c.2438dup	p.Asn813LysfsTer6	p.N813Kfs*6	ENST00000257290	NM_006206.4	811	tca/tcAa																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8518111	8518111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	108	495	0	ENST00000356435.5:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000356435		427	cGa/cAa																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140507774	140507774	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	97	422	0	ENST00000288602.6:c.697A>C	p.Thr233Pro	p.T233P	ENST00000288602	NM_004333.4	233	Aca/Cca																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118374267	118374267	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	118	689	0	ENST00000534358.1:c.7660G>C	p.Glu2554Gln	p.E2554Q	ENST00000534358	NM_005933.3	2554	Gag/Cag																																													NEWRECORD																																		
PTPN11	5781	MSKCC	GRCh37	12	112891044	112891044	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	377	449	0	ENST00000351677.2:c.378A>T	p.Leu126Phe	p.L126F	ENST00000351677	NM_002834.3	126	ttA/ttT																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	156	455	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249012	55249013	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGT			P-0005533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	299	499	0	ENST00000275493.2:c.2310_2311insGGT	p.Asp770_Asn771insGly	p.D770_N771insG	ENST00000275493	NM_005228.3	770	-/GGT																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157405905	157405905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	125	357	0	ENST00000346085.5:c.2147C>T	p.Ala716Val	p.A716V	ENST00000346085	NM_020732.3	716	gCg/gTg																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25966872	25966873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	95	401	0	ENST00000435504.4:c.2333dupC	p.Val779SerfsTer25	p.V779Sfs*25	ENST00000435504		778	cca/ccCa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112170772	112170772	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765557332		P-0014557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	120	575	0	ENST00000257430.4:c.1868G>A	p.Arg623Gln	p.R623Q	ENST00000257430	NM_000038.5	623	cGg/cAg																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249079	55249079	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	353	539	0	ENST00000275493.2:c.2377A>C	p.Met793Leu	p.M793L	ENST00000275493	NM_005228.3	793	Atg/Ctg																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43604493	43604493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	269	574	0	ENST00000355710.3:c.1078C>T	p.Arg360Trp	p.R360W	ENST00000355710	NM_020975.4	360	Cgg/Tgg																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202151289	202151290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	224	620	1	ENST00000358485.4:c.1596dupA	p.Leu533ThrfsTer6	p.L533Tfs*6	ENST00000358485	NM_001080125.1	530	aga/agAa																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47144880	47144880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	518	589	4	ENST00000409792.3:c.4873C>T	p.Arg1625Cys	p.R1625C	ENST00000409792	NM_014159.6	1625	Cgt/Tgt																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50912125	50912125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	374	779	5	ENST00000440232.2:c.1859C>T	p.Thr620Met	p.T620M	ENST00000440232	NM_002691.3	620	aCg/aTg																																													NEWRECORD																																		
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	181	387	3	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																													NEWRECORD																																		
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	223	512	4	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	416796	416796	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756725945		P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	374	395	0	ENST00000399788.2:c.3754C>T	p.Arg1252Cys	p.R1252C	ENST00000399788	NM_001042603.1	1252	Cgt/Tgt																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42054541	42054541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	207	467	2	ENST00000219905.7:c.7731delA	p.Asp2578ThrfsTer10	p.D2578Tfs*10	ENST00000219905	NM_001164273.1	2575	agA/ag																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43596093	43596093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	270	655	9	ENST00000355710.3:c.260G>A	p.Cys87Tyr	p.C87Y	ENST00000355710	NM_020975.4	87	tGc/tAc																																													NEWRECORD																																		
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	338	869	7	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																													NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	347903	347903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	451	947	3	ENST00000262320.3:c.1603G>A	p.Val535Ile	p.V535I	ENST00000262320	NM_003502.3	535	Gtc/Atc																																													NEWRECORD																																		
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	35	550	1	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16004934	16004935	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	315	650	2	ENST00000268712.3:c.2319dupA	p.Pro774ThrfsTer3	p.P774Tfs*3	ENST00000268712	NM_006311.3	773	-/A																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41243743	41243743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	270	616	0	ENST00000357654.3:c.3805G>A	p.Asp1269Asn	p.D1269N	ENST00000357654	NM_007294.3	1269	Gac/Aac																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2222274	2222274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	367	798	1	ENST00000398665.3:c.3106G>T	p.Asp1036Tyr	p.D1036Y	ENST00000398665	NM_032482.2	1036	Gat/Tat																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15374337	15374337	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	307	726	1	ENST00000263377.2:c.1235A>G	p.Tyr412Cys	p.Y412C	ENST00000263377	NM_058243.2	412	tAc/tGc																																													NEWRECORD																																		
MLL4	9757	MSKCC	GRCh37	19	36212191	36212191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	259	614	4	ENST00000222270.7:c.1942C>T	p.Arg648Trp	p.R648W	ENST00000222270	NM_014727.1	648	Cgg/Tgg																																													NEWRECORD																																		
ERF	2077	MSKCC	GRCh37	19	42754583	42754583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	310	688	3	ENST00000222329.4:c.157G>A	p.Gly53Arg	p.G53R	ENST00000222329	NM_006494.2	53	Ggg/Agg																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50916737	50916737	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	266	628	1	ENST00000440232.2:c.2209T>A	p.Ser737Thr	p.S737T	ENST00000440232	NM_002691.3	737	Tct/Act																																													NEWRECORD																																		
NFE2L2	4780	MSKCC	GRCh37	2	178095601	178095602	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	AATAAGGTTTT			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	156	501	0	ENST00000397062.3:c.1719_1729dupAAAACCTTATT	p.Ser577Ter	p.S577*	ENST00000397062	NM_006164.4	577	tct/tAAAACCTTATTct																																													NEWRECORD																																		
NFE2L2	4780	MSKCC	GRCh37	2	178095619	178095620	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATCA			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	173	543	0	ENST00000397062.3:c.1707_1711dupTGATG	p.Glu571ValfsTer43	p.E571Vfs*43	ENST00000397062	NM_006164.4	571	gaa/gTGATGaa																																													NEWRECORD																																		
SMARCB1	6598	MSKCC	GRCh37	22	24167562	24167562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	275	572	8	ENST00000263121.7:c.946C>T	p.Arg316Trp	p.R316W	ENST00000263121	NM_003073.3	316	Cgg/Tgg																																													NEWRECORD																																		
CHEK2	11200	MSKCC	GRCh37	22	29105996	29105996	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	155	380	1	ENST00000328354.6:c.844C>A	p.His282Asn	p.H282N	ENST00000328354	NM_007194.3	282	Cat/Aat																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30691893	30691893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	409	462	4	ENST00000359013.4:c.470C>T	p.Thr157Ile	p.T157I	ENST00000359013	NM_001024847.2	157	aCt/aTt																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187549443	187549443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	278	576	4	ENST00000441802.2:c.4675G>A	p.Ala1559Thr	p.A1559T	ENST00000441802	NM_005245.3	1559	Gcc/Acc																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30680916	30680916	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	333	762	4	ENST00000376406.3:c.803G>T	p.Arg268Met	p.R268M	ENST00000376406	NM_014641.2	268	aGg/aTg																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32165126	32165126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	343	613	1	ENST00000375023.3:c.5002C>T	p.Arg1668Cys	p.R1668C	ENST00000375023	NM_004557.3	1668	Cgc/Tgc																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128845090	128845090	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1278	314	855	5	ENST00000249373.3:c.584T>C	p.Val195Ala	p.V195A	ENST00000249373	NM_005631.4	195	gTg/gCg																																													NEWRECORD																																		
MYC	4609	MSKCC	GRCh37	8	128753100	128753100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	458	477	2	ENST00000377970.2:c.1261G>C	p.Val421Leu	p.V421L	ENST00000377970	NM_002467.4	421	Gtc/Ctc																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70361095	70361097	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	11	198	0	ENST00000374080.3:c.6285_6287delACA	p.Gln2115del	p.Q2115del	ENST00000374080		2095	CAA/-																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	268	470	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	196	407	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0014168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	235	657	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2210451	2210451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	90	460	1	ENST00000398665.3:c.1058C>T	p.Ala353Val	p.A353V	ENST00000398665	NM_032482.2	353	gCg/gTg																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81969884	81969884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199840870		P-0014168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1431	317	962	1	ENST00000359376.3:c.2953G>A	p.Val985Ile	p.V985I	ENST00000359376	NM_002661.3	985	Gtc/Atc																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41101179	41101179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	98	248	0	ENST00000373198.4:c.1177G>A	p.Val393Met	p.V393M	ENST00000373198	NM_133170.3	393	Gtg/Atg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175287	112175288	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	154	383	0	ENST00000257430.4:c.3999dup	p.Ser1334IlefsTer8	p.S1334Ifs*8	ENST00000257430	NM_000038.5	1332	-/A																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	87	283	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	123	448	1	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0004960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	382	586	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs770248150		P-0004960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	223	422	0	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																													NEWRECORD																																		
NEGR1	257194	MSKCC	GRCh37	1	72400848	72400848	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1624	89	886	0	ENST00000357731.5:c.323T>C	p.Val108Ala	p.V108A	ENST00000357731	NM_173808.2	108	gTa/gCa																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153245504	153245504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	118	512	1	ENST00000281708.4:c.1687A>G	p.Ile563Val	p.I563V	ENST00000281708	NM_033632.3	563	Atc/Gtc																																													NEWRECORD																																		
FGF19	9965	MSKCC	GRCh37	11	69514200	69514200	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1444	170	746	0	ENST00000294312.3:c.481C>A	p.Pro161Thr	p.P161T	ENST00000294312	NM_005117.2	161	Cca/Aca																																													NEWRECORD																																		
CRLF2	64109	MSKCC	GRCh37	X	1321390	1321390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1110	574	533	1	ENST00000381566.1:c.365C>T	p.Pro122Leu	p.P122L	ENST00000381566		122	cCg/cTg																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	531	519	2	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66937392	66937392	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	174	365	0	ENST00000374690.3:c.2246C>A	p.Ala749Asp	p.A749D	ENST00000374690	NM_000044.3	749	gCc/gAc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174694	112174695	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0004960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1138	165	610	0	ENST00000257430.4:c.3404_3405del	p.Tyr1135Ter	p.Y1135*	ENST00000257430	NM_000038.5	1135	TAt/t																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0005163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	125	463	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48581157	48581157	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	41	248	0	ENST00000342988.3:c.461C>G	p.Ser154Ter	p.S154*	ENST00000342988	NM_005359.5	154	tCa/tGa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0005163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	121	221	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72821760	72821760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	193	556	3	ENST00000268489.5:c.10415C>T	p.Ala3472Val	p.A3472V	ENST00000268489	NM_006885.3	3472	gCg/gTg																																													NEWRECORD																																		
RAD21	5885	MSKCC	GRCh37	8	117864807	117864808	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCTGCTGT			P-0005163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	133	544	0	ENST00000297338.2:c.1293_1301dup	p.Gln431_Gln433dup	p.Q431_Q433dup	ENST00000297338	NM_006265.2	431	cat/caACAGCAGCAt																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114901017	114901018	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0005163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	141	640	0	ENST00000543371.1:c.629_630del	p.His210LeufsTer117	p.H210Lfs*117	ENST00000543371	NM_001198531.1	209	gaACac/gaac																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0010406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	223	686	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17131327	17131327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	218	656	0	ENST00000285071.4:c.125G>T	p.Gly42Val	p.G42V	ENST00000285071	NM_144997.5	42	gGt/gTt																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41219661	41219661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	367	588	2	ENST00000357654.3:c.5038A>G	p.Ile1680Val	p.I1680V	ENST00000357654	NM_007294.3	1680	Att/Gtt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175918	112175919	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAGAATCAAATGAATCCAAGAGAAAGAGGCAG			P-0010406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	27	327	0	ENST00000257430.4:c.4641_4642insTCCAAGAGAAAGAGGCAGAAGAATCAAATGAA	p.Asn1548SerfsTer28	p.N1548Sfs*28	ENST00000257430	NM_000038.5	1543	aaa/aAAGAATCAAATGAATCCAAGAGAAAGAGGCAGaa																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16255665	16255665	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			232	154	287	0	ENST00000375759.3:c.2930A>T	p.Asp977Val	p.D977V	ENST00000375759	NM_015001.2	977	gAt/gTt																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16261463	16261463	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	198	315	0	ENST00000375759.3:c.8728G>T	p.Glu2910Ter	p.E2910*	ENST00000375759	NM_015001.2	2910	Gag/Tag																																													NEWRECORD																																		
NFE2L2	4780	MSKCC	GRCh37	2	178096484	178096484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			567	239	333	0	ENST00000397062.3:c.847G>A	p.Asp283Asn	p.D283N	ENST00000397062	NM_006164.4	283	Gat/Aat																																													NEWRECORD																																		
RAF1	5894	MSKCC	GRCh37	3	12653503	12653503	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1073	247	398	0	ENST00000251849.4:c.266G>C	p.Arg89Thr	p.R89T	ENST00000251849	NM_002880.3	89	aGg/aCg																																													NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50455141	50455141	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			396	132	267	0	ENST00000331340.3:c.688A>T	p.Met230Leu	p.M230L	ENST00000331340	NM_006060.4	230	Atg/Ttg																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43615069	43615069	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			396	332	349	0	ENST00000355710.3:c.2483G>C	p.Gly828Ala	p.G828A	ENST00000355710	NM_020975.4	828	gGc/gCc																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43615190	43615190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	73	172	0	ENST00000355710.3:c.2604G>A	p.Met868Ile	p.M868I	ENST00000355710	NM_020975.4	868	atG/atA																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			58	503	378	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																													NEWRECORD																																		
ERCC4	2072	MSKCC	GRCh37	16	14042188	14042189	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			56	247	218	0	ENST00000311895.7:c.2739dup	p.Gly914ArgfsTer26	p.G914Rfs*26	ENST00000311895	NM_005236.2	912	gga/ggAa																																													NEWRECORD																																		
PIK3C3	5289	MSKCC	GRCh37	18	39584375	39584375	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	199	343	0	ENST00000262039.4:c.1040del	p.Gln347ArgfsTer14	p.Q347Rfs*14	ENST00000262039	NM_002647.2	347	cAg/cg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0006405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	103	717	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																													NEWRECORD																																		
ERCC3	2071	MSKCC	GRCh37	2	128046289	128046289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	89	601	2	ENST00000285398.2:c.974G>A	p.Arg325Gln	p.R325Q	ENST00000285398	NM_000122.1	325	cGa/cAa																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143191893	143191893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	39	621	1	ENST00000262992.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000262992	NM_001101669.1	180	Gaa/Aaa																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38060823	38060823	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1575	88	1014	1	ENST00000250448.2:c.1166A>T	p.Lys389Ile	p.K389I	ENST00000250448	NM_004496.3	389	aAa/aTa																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140501219	140501220	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	94	448	0	ENST00000288602.6:c.852_853insA	p.Gln285ThrfsTer3	p.Q285Tfs*3	ENST00000288602	NM_004333.4	284	-/A																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44950066	44950066	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002245-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			410	62	474	1	ENST00000377967.4:c.3835C>T	p.Arg1279Ter	p.R1279*	ENST00000377967	NM_021140.2	1279	Cga/Tga																																													NEWRECORD																																		
ERCC4	2072	MSKCC	GRCh37	16	14015937	14015937	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs187435008		P-0002245-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			743	101	308	0	ENST00000311895.7:c.257G>A	p.Arg86His	p.R86H	ENST00000311895	NM_005236.2	86	cGc/cAc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002245-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			618	438	337	0	ENST00000346208.3:c.1220_1221insA	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcAg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	48	467	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0005642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	73	360	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67479784	67479784	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	68	469	0	ENST00000327367.4:c.1091A>C	p.Tyr364Ser	p.Y364S	ENST00000327367	NM_005902.3	364	tAc/tCc																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971079	21971080	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0005642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	49	215	0	ENST00000304494.5:c.277_278dup	p.Leu94ArgfsTer53	p.L94Rfs*53	ENST00000304494	NM_000077.4	93	acg/acACg																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187584475	187584475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	65	457	0	ENST00000441802.2:c.3558C>A	p.Phe1186Leu	p.F1186L	ENST00000441802	NM_005245.3	1186	ttC/ttA																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162731205	162731205	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	68	523	0	ENST00000367921.3:c.1060G>C	p.Asp354His	p.D354H	ENST00000367921	NM_006182.2	354	Gat/Cat																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187630240	187630240	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	44	352	0	ENST00000441802.2:c.742G>C	p.Glu248Gln	p.E248Q	ENST00000441802	NM_005245.3	248	Gaa/Caa																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	94120614	94120614	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1334	96	865	0	ENST00000369303.4:c.437T>G	p.Ile146Arg	p.I146R	ENST00000369303	NM_004440.3	146	aTa/aGa																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42042709	42042709	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1256	297	1012	0	ENST00000219905.7:c.6904G>T	p.Glu2302Ter	p.E2302*	ENST00000219905	NM_001164273.1	2302	Gaa/Taa																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47038726	47038726	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	105	245	0	ENST00000329236.7:c.502C>T	p.Gln168Ter	p.Q168*	ENST00000329236	NM_001204466.1	168	Cag/Tag																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63410946	63410946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	96	357	0	ENST00000330258.3:c.2221C>T	p.Pro741Ser	p.P741S	ENST00000330258	NM_152424.3	741	Ccc/Tcc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7576882	7576883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	132	537	0	ENST00000269305.4:c.963dup	p.Pro322ThrfsTer15	p.P322Tfs*15	ENST00000269305	NM_001126112.2	321	-/A																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0006548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	163	431	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	113	288	0	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	164	456	0	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	152	380	1	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	194	467	1	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151891590	151891590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	185	421	1	ENST00000262189.6:c.4442G>A	p.Arg1481Gln	p.R1481Q	ENST00000262189	NM_170606.2	1481	cGa/cAa																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46244967	46244967	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	248	572	0	ENST00000334344.6:c.3061C>A	p.Pro1021Thr	p.P1021T	ENST00000334344	NM_152641.2	1021	Ccc/Acc																																													NEWRECORD																																		
STAT3	6774	MSKCC	GRCh37	17	40497630	40497630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	307	703	1	ENST00000264657.5:c.319C>T	p.Arg107Trp	p.R107W	ENST00000264657	NM_139276.2	107	Cgg/Tgg																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15296358	15296358	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202228716		P-0006548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	143	493	2	ENST00000263388.2:c.2084C>T	p.Pro695Leu	p.P695L	ENST00000263388	NM_000435.2	695	cCg/cTg																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70344125	70344125	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	108	646	2	ENST00000374080.3:c.1861C>T	p.Arg621Ter	p.R621*	ENST00000374080		621	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175879	112175880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	168	416	0	ENST00000257430.4:c.4592dup	p.Asn1531LysfsTer2	p.N1531Kfs*2	ENST00000257430	NM_000038.5	1530	gaa/gAaa																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0002102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			238	106	169	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1806599	1806599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			801	351	371	0	ENST00000260795.2:c.1315C>T	p.Arg439Cys	p.R439C	ENST00000260795		439	Cgc/Tgc																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32945129	32945129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			464	147	323	0	ENST00000380152.3:c.8524C>T	p.Arg2842Cys	p.R2842C	ENST00000380152		2842	Cgc/Tgc																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103504572	103504572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			630	238	455	0	ENST00000355739.4:c.193C>T	p.Leu65Phe	p.L65F	ENST00000355739	NM_000123.3	65	Ctc/Ttc																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249360	153249361	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0002102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	167	347	0	ENST00000281708.4:c.1417dupA	p.Arg473LysfsTer4	p.R473Kfs*4	ENST00000281708	NM_033632.3	473	aga/aAga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174459	112174459	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	149	259	0	ENST00000257430.4:c.3168del	p.Ile1056MetfsTer5	p.I1056Mfs*5	ENST00000257430	NM_000038.5	1056	atA/at																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175668	112175668	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	202	386	1	ENST00000257430.4:c.4377del	p.Ala1460LeufsTer13	p.A1460Lfs*13	ENST00000257430	NM_000038.5	1459	acT/ac																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720625	89720687	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCTTTTCTTTTTTTTTTTTTTTAGGACAAAATGTTTCACTTTTGGGTAAATACATTCTTCA	TTTCTTTTCTTTTTTTTTTTTTTTAGGACAAAATGTTTCACTTTTGGGTAAATACATTCTTCA	-			P-0003506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	53	107	0	ENST00000371953.3:c.802-25_839del		p.X268_splice	ENST00000371953	NM_000314.4	268																																														NEWRECORD																																		
VTCN1	79679	MSKCC	GRCh37	1	117690296	117690297	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	110	306	0	ENST00000369458.3:c.832dup	p.Tyr278LeufsTer34	p.Y278Lfs*34	ENST00000369458	NM_024626.3	278	tac/tTac																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0010201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	792	667	2	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151878749	151878749	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1211949081		P-0010201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	191	373	0	ENST00000262189.6:c.6196C>T	p.Arg2066Ter	p.R2066*	ENST00000262189	NM_170606.2	2066	Cga/Tga																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16049724	16049724	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	469	857	0	ENST00000268712.3:c.1048C>T	p.Arg350Ter	p.R350*	ENST00000268712	NM_006311.3	350	Cga/Tga																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36164812	36164813	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	204	454	0	ENST00000300305.3:c.1062dup	p.Tyr355LeufsTer245	p.Y355Lfs*245	ENST00000300305		354	-/C																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115120634	115120643	+	frameshift_variant	Frame_Shift_Del	DEL	GACCATCTCG	GACCATCTCG	-			P-0010201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	261	652	1	ENST00000257566.3:c.363_372del	p.Glu122LeufsTer14	p.E122Lfs*14	ENST00000257566	NM_016569.3	121	acCGAGATGGTC/ac																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68835728	68835729	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAC			P-0010201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	266	538	0	ENST00000261769.5:c.322_323insCACA	p.Arg108ThrfsTer61	p.R108Tfs*61	ENST00000261769	NM_004360.3	107	tac/tACACac																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76938218	76938219	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	25	610	0	ENST00000373344.5:c.2529dup	p.Thr844TyrfsTer5	p.T844Yfs*5	ENST00000373344	NM_000489.3	843	-/T																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0000607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			565	138	303	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			275	42	142	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16257143	16257143	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			763	154	449	0	ENST00000375759.3:c.4408C>T	p.Arg1470Ter	p.R1470*	ENST00000375759	NM_015001.2	1470	Cga/Tga																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227662590	227662590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	65	192	0	ENST00000305123.5:c.865C>T	p.Leu289Phe	p.L289F	ENST00000305123	NM_005544.2	289	Ctc/Ttc																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52637603	52637603	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			910	241	601	0	ENST00000394830.3:c.2713G>C	p.Glu905Gln	p.E905Q	ENST00000394830	NM_018313.4	905	Gag/Cag																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106508075	106508075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			228	58	132	1	ENST00000359195.3:c.69G>A	p.Met23Ile	p.M23I	ENST00000359195	NM_002649.2	23	atG/atA																																													NEWRECORD																																		
LMO1	4004	MSKCC	GRCh37	11	8251950	8251950	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			497	136	392	2	ENST00000335790.3:c.127T>C	p.Tyr43His	p.Y43H	ENST00000335790	NM_002315.2	43	Tac/Cac																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	29002012	29002012	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			584	116	283	1	ENST00000282397.4:c.1153A>G	p.Thr385Ala	p.T385A	ENST00000282397	NM_002019.4	385	Act/Gct																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37883987	37883987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			504	125	369	3	ENST00000269571.5:c.3458G>T	p.Arg1153Leu	p.R1153L	ENST00000269571		1153	cGa/cTa																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68845736	68845737	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGT			P-0000607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	88	262	1	ENST00000261769.5:c.983_986dupTGGT	p.Thr330GlyfsTer21	p.T330Gfs*21	ENST00000261769	NM_004360.3	328	gtg/gTGGTtg																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152419920	152419921	+	missense_variant	Missense_Mutation	DNP	TC	TC	AG			P-0000607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	86	247	0	ENST00000206249.3:c.1607_1608delTCinsAG	p.Leu536Gln	p.L536Q	ENST00000206249	NM_000125.3	536	cTC/cAG																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	103	289	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68842748	68842748	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	42	360	0	ENST00000261769.5:c.684C>G	p.Tyr228Ter	p.Y228*	ENST00000261769	NM_004360.3	228	taC/taG																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56178641	56178641	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	93	229	0	ENST00000399503.3:c.3615del	p.Pro1206LeufsTer39	p.P1206Lfs*39	ENST00000399503	NM_005921.1	1205	gTt/gt																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44942029	44942030	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	93	273	0	ENST00000377967.4:c.3284dup	p.Trp1096ValfsTer7	p.W1096Vfs*7	ENST00000377967	NM_021140.2	1093	-/A																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37667850	37667850	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002796-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	63	323	0	ENST00000447079.4:c.2735G>C	p.Arg912Pro	p.R912P	ENST00000447079	NM_015083.1	912	cGt/cCt																																													NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31386450	31386450	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0002796-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			136	34	118	0	ENST00000328111.2:c.1674+1G>C		p.X558_splice	ENST00000328111	NM_006892.3	558																																														NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37627417	37627418	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002796-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			198	51	235	0	ENST00000447079.4:c.1337dup	p.Leu447ValfsTer15	p.L447Vfs*15	ENST00000447079	NM_015083.1	444	-/A																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	109	770	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0014694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	109	692	4	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	102	876	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
NUP93	9688	MSKCC	GRCh37	16	56855485	56855485	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs79070284		P-0014694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	141	585	0	ENST00000308159.5:c.634G>A	p.Val212Ile	p.V212I	ENST00000308159	NM_014669.4	212	Gtc/Atc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579354	7579355	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0014694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	190	1019	0	ENST00000269305.4:c.332_333del	p.Leu111ArgfsTer37	p.L111Rfs*37	ENST00000269305	NM_001126112.2	111	cTG/c																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2222183	2222183	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	60	1070	2	ENST00000398665.3:c.3015G>T	p.Gln1005His	p.Q1005H	ENST00000398665	NM_032482.2	1005	caG/caT																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66467526	66467526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	82	477	0	ENST00000273854.3:c.743C>T	p.Thr248Ile	p.T248I	ENST00000273854	NM_004439.5	248	aCt/aTt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175452	112175452	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	213	453	0	ENST00000257430.4:c.4161T>A	p.Cys1387Ter	p.C1387*	ENST00000257430	NM_000038.5	1387	tgT/tgA																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	61	372	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
EIF4A2	1974	MSKCC	GRCh37	3	186504432	186504432	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	94	519	0	ENST00000323963.5:c.769G>A	p.Glu257Lys	p.E257K	ENST00000323963		257	Gag/Aag																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37619180	37619180	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	143	391	0	ENST00000447079.4:c.856C>G	p.Gln286Glu	p.Q286E	ENST00000447079	NM_015083.1	286	Cag/Gag																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70117884	70117884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	36	214	0	ENST00000245479.2:c.352G>A	p.Ala118Thr	p.A118T	ENST00000245479	NM_000346.3	118	Gcg/Acg																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70120202	70120203	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	120	340	0	ENST00000245479.2:c.1205dup	p.Ser403GlufsTer175	p.S403Efs*175	ENST00000245479	NM_000346.3	402	ctg/cTtg																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0013172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	402	671	0	ENST00000269571.5:c.2331_2339dupGGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42794788	42794788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	59	577	0	ENST00000575354.2:c.1868G>A	p.Gly623Glu	p.G623E	ENST00000575354	NM_015125.3	623	gGa/gAa																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115118758	115118758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	409	647	0	ENST00000257566.3:c.583delG	p.Glu195AsnfsTer13	p.E195Nfs*13	ENST00000257566	NM_016569.3	195	Gaa/aa																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68857530	68857531	+	splice_donor_variant	Splice_Site	DEL	GT	GT	-			P-0013172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	164	273	0	ENST00000261769.5:c.2164+1_2164+2del		p.X722_splice	ENST00000261769	NM_004360.3	722																																														NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	48	488	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916924	178916924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225060		P-0014622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	53	617	0	ENST00000263967.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000263967	NM_006218.2	104	cCa/cTa																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56168686	56168687	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0014622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	143	533	0	ENST00000399503.3:c.1543dup	p.Leu515ProfsTer26	p.L515Pfs*26	ENST00000399503	NM_005921.1	514	tcc/tCcc																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56168803	56168804	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0014622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	205	576	0	ENST00000399503.3:c.1658dup	p.Tyr553Ter	p.Y553*	ENST00000399503	NM_005921.1	553	tac/tAac																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0002678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			479	128	207	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																													NEWRECORD																																		
CSF1R	1436	MSKCC	GRCh37	5	149434799	149434799	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0002678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1095	241	441	0	ENST00000286301.3:c.2654+1G>T		p.X885_splice	ENST00000286301	NM_005211.3	885																																														NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48575189	48575189	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			701	179	382	0	ENST00000342988.3:c.383T>C	p.Val128Ala	p.V128A	ENST00000342988	NM_005359.5	128	gTg/gCg																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5218538	5218538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			695	203	374	0	ENST00000357368.4:c.3941G>A	p.Arg1314His	p.R1314H	ENST00000357368	NM_002850.3	1314	cGc/cAc																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70344009	70344009	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			486	257	235	0	ENST00000374080.3:c.1745C>T	p.Thr582Met	p.T582M	ENST00000374080		582	aCg/aTg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578423	7578424	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			623	173	298	0	ENST00000269305.4:c.506dup	p.Met169IlefsTer12	p.M169Ifs*12	ENST00000269305	NM_001126112.2	169	atg/atTg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	192	613	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0014641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	108	609	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59821817	59821817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	91	629	1	ENST00000259008.2:c.2233G>A	p.Ala745Thr	p.A745T	ENST00000259008	NM_032043.2	745	Gca/Aca																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0014641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	35	208	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41306649	41306650	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0014641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	113	793	0	ENST00000373198.4:c.1008_1009dup	p.Thr337ArgfsTer4	p.T337Rfs*4	ENST00000373198	NM_133170.3	337	acc/aGAcc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115751	8115751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1157	123	663	2	ENST00000346208.3:c.1097G>A	p.Arg366Gln	p.R366Q	ENST00000346208		366	cGa/cAa																																													NEWRECORD																																		
SLX4	84464	MSKCC	GRCh37	16	3639732	3639732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1853	374	914	0	ENST00000294008.3:c.3907G>A	p.Glu1303Lys	p.E1303K	ENST00000294008	NM_032444.2	1303	Gaa/Aaa																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56176559	56176559	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	164	497	0	ENST00000399503.3:c.2109del	p.Ser704GlnfsTer21	p.S704Qfs*21	ENST00000399503	NM_005921.1	703	atA/at																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56178486	56178487	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	208	315	0	ENST00000399503.3:c.3460dup	p.Ala1154GlyfsTer6	p.A1154Gfs*6	ENST00000399503	NM_005921.1	1153	-/G																																													NEWRECORD																																		
BTK	695	MSKCC	GRCh37	X	100611793	100611793	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	154	512	0	ENST00000308731.7:c.1328T>C	p.Ile443Thr	p.I443T	ENST00000308731	NM_000061.2	443	aTt/aCt																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120512260	120512260	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	454	362	0	ENST00000256646.2:c.982A>T	p.Asn328Tyr	p.N328Y	ENST00000256646	NM_024408.3	328	Aac/Tac																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56168704	56168704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	665	472	0	ENST00000399503.3:c.1558C>T	p.Gln520Ter	p.Q520*	ENST00000399503	NM_005921.1	520	Cag/Tag																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67070595	67070595	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	585	540	0	ENST00000412916.2:c.219G>A	p.Trp73Ter	p.W73*	ENST00000412916		73	tgG/tgA																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGGACCC			P-0007984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	434	485	0	ENST00000346208.3:c.1000_1007dup	p.Val337GlyfsTer21	p.V337Gfs*21	ENST00000346208		333	-/GGGGACCC																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	336	621	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																													NEWRECORD																																		
HIST1H3F	8968	MSKCC	GRCh37	6	26250500	26250501	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACACAGGTTGGTGTCCTCAAAGAGCCCCACCAGGT			P-0006928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1684	209	1395	0	ENST00000446824.2:c.299_333dup	p.Ala112ThrfsTer19	p.A112Tfs*19	ENST00000446824	NM_021018.2	111	-/ACCTGGTGGGGCTCTTTGAGGACACCAACCTGTGT																																													NEWRECORD																																		
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	97	843	1	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			221	321	733	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			107	325	471	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			292	91	423	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																													NEWRECORD																																		
PIK3CD	5293	MSKCC	GRCh37	1	9782063	9782063	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			235	194	718	0	ENST00000377346.4:c.2086A>G	p.Asn696Asp	p.N696D	ENST00000377346	NM_005026.3	696	Aat/Gat																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101231	27101231	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	60	581	0	ENST00000324856.7:c.4513A>G	p.Thr1505Ala	p.T1505A	ENST00000324856	NM_006015.4	1505	Acc/Gcc																																													NEWRECORD																																		
RFWD2	64326	MSKCC	GRCh37	1	176145045	176145045	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			330	59	574	0	ENST00000367669.3:c.565+1G>A		p.X189_splice	ENST00000367669	NM_022457.5	189																																														NEWRECORD																																		
MYCN	4613	MSKCC	GRCh37	2	16085728	16085728	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144939456		P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	146	475	0	ENST00000281043.3:c.904C>T	p.Arg302Cys	p.R302C	ENST00000281043	NM_005378.4	302	Cgt/Tgt																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202149551	202149551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139337151		P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	75	563	0	ENST00000358485.4:c.992C>T	p.Thr331Met	p.T331M	ENST00000358485	NM_001080125.1	331	aCg/aTg																																													NEWRECORD																																		
MLH1	4292	MSKCC	GRCh37	3	37061895	37061895	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			100	319	447	1	ENST00000231790.2:c.979C>T	p.Gln327Ter	p.Q327*	ENST00000231790	NM_000249.3	327	Cag/Tag																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			386	65	606	0	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt																																													NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1808581	1808581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	50	619	0	ENST00000260795.2:c.2194C>T	p.His732Tyr	p.H732Y	ENST00000260795		732	Cat/Tat																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187549334	187549334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	88	607	1	ENST00000441802.2:c.4784C>A	p.Ala1595Asp	p.A1595D	ENST00000441802	NM_005245.3	1595	gCt/gAt																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149503915	149503915	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201183721		P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	49	440	0	ENST00000261799.4:c.1921C>T	p.Arg641Cys	p.R641C	ENST00000261799	NM_002609.3	641	Cgc/Tgc																																													NEWRECORD																																		
FGFR4	2264	MSKCC	GRCh37	5	176518690	176518690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	78	304	0	ENST00000292408.4:c.608G>A	p.Arg203His	p.R203H	ENST00000292408	NM_213647.1	203	cGc/cAc																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32170027	32170027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	89	740	0	ENST00000375023.3:c.3581C>T	p.Pro1194Leu	p.P1194L	ENST00000375023	NM_004557.3	1194	cCg/cTg																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32191633	32191633	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			280	276	1180	0	ENST00000375023.3:c.73G>T	p.Gly25Trp	p.G25W	ENST00000375023	NM_004557.3	25	Ggg/Tgg																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117686336	117686336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			181	145	356	0	ENST00000368508.3:c.3005T>C	p.Val1002Ala	p.V1002A	ENST00000368508	NM_002944.2	1002	gTa/gCa																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157469898	157469898	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			253	152	516	0	ENST00000346085.5:c.2692C>T	p.Arg898Ter	p.R898*	ENST00000346085	NM_020732.3	898	Cga/Tga																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116380038	116380038	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			592	102	807	0	ENST00000397752.3:c.1427A>G	p.His476Arg	p.H476R	ENST00000397752	NM_000245.2	476	cAt/cGt																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140624407	140624407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			79	33	89	0	ENST00000288602.6:c.97G>A	p.Ala33Thr	p.A33T	ENST00000288602	NM_004333.4	33	Gcc/Acc																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8486320	8486320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			156	45	258	0	ENST00000356435.5:c.2497C>A	p.His833Asn	p.H833N	ENST00000356435		833	Cac/Aac																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49428261	49428261	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	63	493	0	ENST00000301067.7:c.10441-2A>G		p.X3481_splice	ENST00000301067	NM_003482.3	3481																																														NEWRECORD																																		
HNF1A	6927	MSKCC	GRCh37	12	121438877	121438877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	70	535	1	ENST00000257555.6:c.1778G>A	p.Ser593Asn	p.S593N	ENST00000257555		593	aGc/aAc																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133219196	133219196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			293	65	499	0	ENST00000320574.5:c.4848G>T	p.Lys1616Asn	p.K1616N	ENST00000320574	NM_006231.2	1616	aaG/aaT																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32929312	32929312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	34	590	2	ENST00000380152.3:c.7322G>A	p.Gly2441Asp	p.G2441D	ENST00000380152		2441	gGc/gAc																																													NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91358450	91358450	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	74	776	0	ENST00000355112.3:c.4195A>G	p.Met1399Val	p.M1399V	ENST00000355112	NM_000057.2	1399	Atg/Gtg																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3820866	3820866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	71	298	0	ENST00000262367.5:c.2585C>T	p.Thr862Met	p.T862M	ENST00000262367	NM_004380.2	862	aCg/aTg																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17129612	17129612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	226	719	1	ENST00000285071.4:c.274C>T	p.His92Tyr	p.H92Y	ENST00000285071	NM_144997.5	92	Cac/Tac																																													NEWRECORD																																		
PIK3C3	5289	MSKCC	GRCh37	18	39600632	39600632	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	82	962	2	ENST00000262039.4:c.1447G>T	p.Ala483Ser	p.A483S	ENST00000262039	NM_002647.2	483	Gcc/Tcc																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48584558	48584558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			508	40	503	0	ENST00000342988.3:c.731C>A	p.Pro244His	p.P244H	ENST00000342988	NM_005359.5	244	cCt/cAt																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5212456	5212456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	123	540	0	ENST00000357368.4:c.4661C>T	p.Ala1554Val	p.A1554V	ENST00000357368	NM_002850.3	1554	gCg/gTg																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15291061	15291061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	184	557	0	ENST00000263388.2:c.3149G>A	p.Arg1050Gln	p.R1050Q	ENST00000263388	NM_000435.2	1050	cGg/cAg																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39921451	39921451	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			481	34	805	0	ENST00000378444.4:c.4369A>G	p.Ile1457Val	p.I1457V	ENST00000378444	NM_001123385.1	1457	Att/Gtt																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53224207	53224207	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202160290		P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	182	771	0	ENST00000375401.3:c.3344G>A	p.Arg1115His	p.R1115H	ENST00000375401	NM_004187.3	1115	cGc/cAc																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76888785	76888785	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	115	1205	0	ENST00000373344.5:c.5044G>T	p.Gly1682Cys	p.G1682C	ENST00000373344	NM_000489.3	1682	Ggc/Tgc																																													NEWRECORD																																		
BTK	695	MSKCC	GRCh37	X	100608923	100608923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			489	152	900	0	ENST00000308731.7:c.1685G>A	p.Arg562Gln	p.R562Q	ENST00000308731	NM_000061.2	562	cGg/cAg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			281	119	485	0	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	55	602	1	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202149793	202149794	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	71	646	1	ENST00000358485.4:c.1235_1236del	p.Lys412SerfsTer11	p.K412Sfs*11	ENST00000358485	NM_001080125.1	412	AAa/a																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			112	74	276	3	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	242	419	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47103755	47103756	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			596	92	879	5	ENST00000409792.3:c.6190_6191delGA	p.Asp2064ProfsTer8	p.D2064Pfs*8	ENST00000409792	NM_014159.6	2064	GAc/c																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187539266	187539266	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			459	71	667	0	ENST00000441802.2:c.8474delG	p.Gly2825GlufsTer4	p.G2825Efs*4	ENST00000441802	NM_005245.3	2825	gGa/ga																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			99	37	230	3	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																													NEWRECORD																																		
BMPR1A	657	MSKCC	GRCh37	10	88649922	88649922	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			180	140	451	0	ENST00000372037.3:c.176del	p.Leu59Ter	p.L59*	ENST00000372037	NM_004329.2	57	ccT/cc																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64577222	64577224	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	209	648	0	ENST00000337652.1:c.358_360del	p.Lys120del	p.K120del	ENST00000337652	NM_130803.2	120	AAG/-																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16029457	16029457	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			697	88	1110	1	ENST00000268712.3:c.1573del	p.Thr525GlnfsTer30	p.T525Qfs*30	ENST00000268712	NM_006311.3	525	Aca/ca																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76918921	76918921	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			626	108	1522	4	ENST00000373344.5:c.4070del	p.Lys1357ArgfsTer18	p.K1357Rfs*18	ENST00000373344	NM_000489.3	1357	aAg/ag																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0003282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	287	243	1	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225379455	225379455	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	199	243	0	ENST00000264414.4:c.413A>G	p.Asn138Ser	p.N138S	ENST00000264414	NM_003590.4	138	aAc/aGc																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153250922	153250922	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	199	262	0	ENST00000281708.4:c.1138G>C	p.Asp380His	p.D380H	ENST00000281708	NM_033632.3	380	Gat/Cat																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3929856	3929856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	396	262	0	ENST00000262367.5:c.62G>A	p.Gly21Asp	p.G21D	ENST00000262367	NM_004380.2	21	gGt/gAt																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89836321	89836348	+	frameshift_variant	Frame_Shift_Del	DEL	CACCAGGTGCAGGAGGACCCACATCCAC	CACCAGGTGCAGGAGGACCCACATCCAC	-			P-0003282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	156	269	0	ENST00000389301.3:c.2401_2428del	p.Val801LeufsTer13	p.V801Lfs*13	ENST00000389301	NM_000135.2	801	GTGGATGTGGGTCCTCCTGCACCTGGTGct/ct																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	263	340	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	375	482	1	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																													NEWRECORD																																		
HIST1H3D	8351	MSKCC	GRCh37	6	26197478	26197478	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0006181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1334	172	663	0	ENST00000356476.2:c.1A>G	p.Met1?	p.M1?	ENST00000356476		1	Atg/Gtg																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32172151	32172151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	369	413	0	ENST00000375023.3:c.2881G>A	p.Asp961Asn	p.D961N	ENST00000375023	NM_004557.3	961	Gat/Aat																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117663588	117663588	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	69	277	0	ENST00000368508.3:c.4644G>T	p.Glu1548Asp	p.E1548D	ENST00000368508	NM_002944.2	1548	gaG/gaT																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56492755	56492755	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	402	456	0	ENST00000407977.2:c.184A>G	p.Asn62Asp	p.N62D	ENST00000407977		62	Aat/Gat																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175476	112175476	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	363	334	0	ENST00000257430.4:c.4188del	p.Phe1396LeufsTer19	p.F1396Lfs*19	ENST00000257430	NM_000038.5	1395	agT/ag																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114710637	114710638	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	701	757	0	ENST00000543371.1:c.123dup	p.Ala42SerfsTer2	p.A42Sfs*2	ENST00000543371	NM_001198531.1	41	tta/ttAa																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	104	328	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	63	551	0	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115746	8115746	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	106	683	0	ENST00000346208.3:c.1092A>T	p.Arg364Ser	p.R364S	ENST00000346208		364	agA/agT																																													NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91306287	91306287	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	55	424	0	ENST00000355112.3:c.1974T>G	p.Ile658Met	p.I658M	ENST00000355112	NM_000057.2	658	atT/atG																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56178492	56178493	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTGTCTCCTG			P-0010453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	108	371	0	ENST00000399503.3:c.3466_3475dup	p.Glu1159AlafsTer4	p.E1159Afs*4	ENST00000399503	NM_005921.1	1155	-/CTGTCTCCTG																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56180551	56180555	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAT	GAGAT	-			P-0010453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	38	292	0	ENST00000399503.3:c.3880_3884delGAGAT	p.Glu1294LysfsTer13	p.E1294Kfs*13	ENST00000399503	NM_005921.1	1294	GAGATa/a																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061268	38061269	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTTGCCCGG			P-0010453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	80	615	0	ENST00000250448.2:c.712_720dup	p.Pro238_Lys240dup	p.P238_K240dup	ENST00000250448	NM_004496.3	238	-/CCGGGCAAG																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	21	298	0	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578476	7578477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGT			P-0007414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	24	314	0	ENST00000269305.4:c.450_453dup	p.Pro152ThrfsTer30	p.P152Tfs*30	ENST00000269305	NM_001126112.2	151	-/ACCC																																													NEWRECORD																																		
RAD51B	5890	MSKCC	GRCh37	14	68331719	68331719	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0001118-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			168	12	164	0	ENST00000487270.1:c.316-1G>T		p.X106_splice	ENST00000487270	NM_133509.3	106																																														NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115971	8115972	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGTG			P-0001118-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	234	164	0	ENST00000346208.3:c.1318_1319insGTGA	p.Thr440SerfsTer68	p.T440Sfs*68	ENST00000346208		439	-/AGTG																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	84	423	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0007333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	65	480	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974696	21974697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	35	390	0	ENST00000304494.5:c.130dup	p.Tyr44LeufsTer76	p.Y44Lfs*76	ENST00000304494	NM_000077.4	44	tac/tTac																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0001317-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			853	47	502	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48593532	48593532	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001317-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			623	37	286	0	ENST00000342988.3:c.1283A>C	p.Lys428Thr	p.K428T	ENST00000342988	NM_005359.5	428	aAg/aCg																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56437564	56437565	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0001317-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			661	57	348	0	ENST00000407977.2:c.896_897dupTG	p.Asp300TrpfsTer120	p.D300Wfs*120	ENST00000407977		299	-/TG																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156849152	156849152	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1396	192	596	0	ENST00000524377.1:c.2044C>T	p.Arg682Cys	p.R682C	ENST00000524377	NM_002529.3	682	Cgt/Tgt																																													NEWRECORD																																		
PGR	5241	MSKCC	GRCh37	11	100999087	100999087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	212	617	0	ENST00000325455.5:c.715G>A	p.Gly239Ser	p.G239S	ENST00000325455	NM_001202474.3	239	Ggc/Agc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	332	437	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0013651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	545	651	23	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25505568	25505568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	246	554	1	ENST00000264709.3:c.190G>A	p.Asp64Asn	p.D64N	ENST00000264709	NM_175629.2	64	Gac/Aac																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134967304	134967304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	202	498	1	ENST00000398015.3:c.2643G>A	p.Met881Ile	p.M881I	ENST00000398015	NM_004441.4	881	atG/atA																																													NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189526294	189526295	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCAA			P-0013651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	122	317	0	ENST00000264731.3:c.560_564dup	p.Ser189ProfsTer12	p.S189Pfs*12	ENST00000264731	NM_003722.4	186	-/GCCAA																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372248	55372248	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	44	258	0	ENST00000297316.4:c.938T>C	p.Met313Thr	p.M313T	ENST00000297316	NM_022454.3	313	aTg/aCg																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0013651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	169	214	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39933145	39933146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	275	678	0	ENST00000378444.4:c.1453_1454insC	p.Glu485AlafsTer14	p.E485Afs*14	ENST00000378444	NM_001123385.1	485	gaa/gCaa																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	391	499	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78919511	78919511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	233	602	0	ENST00000306801.3:c.3070G>A	p.Gly1024Ser	p.G1024S	ENST00000306801	NM_020761.2	1024	Ggc/Agc																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48603148	48603148	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0005487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	147	327	0	ENST00000342988.3:c.1447+2T>C		p.X483_splice	ENST00000342988	NM_005359.5	483																																														NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15276860	15276861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs753725730		P-0005487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	44	492	0	ENST00000263388.2:c.5404dup	p.Ala1802GlyfsTer8	p.A1802Gfs*8	ENST00000263388	NM_000435.2	1802	gct/gGct																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56448304	56448305	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCGT			P-0005487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	376	439	0	ENST00000407977.2:c.339_342dup	p.Ala115ThrfsTer11	p.A115Tfs*11	ENST00000407977		114	-/ACGG																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	85	455	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	291	518	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	69	324	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																													NEWRECORD																																		
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	59	237	1	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49427265	49427266	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	49	308	0	ENST00000301067.7:c.11220_11222dup	p.Gln3745dup	p.Q3745dup	ENST00000301067	NM_003482.3	3745	caa/caGCAa																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	110	497	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	173	469	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	307	623	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162741822	162741822	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs115169993		P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	129	342	0	ENST00000367921.3:c.1513G>A	p.Gly505Ser	p.G505S	ENST00000367921	NM_006182.2	505	Ggt/Agt																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202136293	202136293	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	203	548	0	ENST00000358485.4:c.537T>A	p.Phe179Leu	p.F179L	ENST00000358485	NM_001080125.1	179	ttT/ttA																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47165327	47165327	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs186148199		P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	219	530	0	ENST00000409792.3:c.799G>A	p.Val267Ile	p.V267I	ENST00000409792	NM_014159.6	267	Gta/Ata																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs770248150		P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	358	480	1	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																													NEWRECORD																																		
HNF1A	6927	MSKCC	GRCh37	12	121431469	121431469	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	130	477	0	ENST00000257555.6:c.673A>G	p.Ser225Gly	p.S225G	ENST00000257555		225	Agc/Ggc																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	85	272	1	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																														NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89805318	89805318	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201494304		P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	157	516	0	ENST00000389301.3:c.4232C>T	p.Pro1411Leu	p.P1411L	ENST00000389301	NM_000135.2	1411	cCg/cTg																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70120455	70120455	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	168	680	0	ENST00000245479.2:c.1457T>C	p.Val486Ala	p.V486A	ENST00000245479	NM_000346.3	486	gTc/gCc																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41573228	41573228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	28	425	0	ENST00000263253.7:c.5513C>A	p.Thr1838Asn	p.T1838N	ENST00000263253	NM_001429.3	1838	aCt/aAt																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47006897	47006897	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	133	257	0	ENST00000329236.7:c.17G>A	p.Arg6His	p.R6H	ENST00000329236	NM_001204466.1	6	cGt/cAt																																													NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	396792	396792	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	37	516	1	ENST00000262320.3:c.234delC	p.Thr79ProfsTer5	p.T79Pfs*5	ENST00000262320	NM_003502.3	78	ccC/cc																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63845553	63845553	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	165	514	0	ENST00000279873.7:c.1295del	p.Asn432MetfsTer47	p.N432Mfs*47	ENST00000279873	NM_032199.2	431	gAa/ga																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10251782	10251782	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	45	553	1	ENST00000340748.4:c.3345del	p.Lys1117ArgfsTer16	p.K1117Rfs*16	ENST00000340748		1115	aaA/aa																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0005063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	2116	605	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	12028660	12028660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	54	651	0	ENST00000353533.5:c.863C>T	p.Ser288Phe	p.S288F	ENST00000353533	NM_003010.3	288	tCt/tTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7574021	7574022	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	145	790	2	ENST00000269305.4:c.1005dup	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	335	-/T																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	356	327	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																														NEWRECORD																																		
MCL1	4170	MSKCC	GRCh37	1	150551677	150551677	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	76	203	0	ENST00000369026.2:c.330G>C	p.Glu110Asp	p.E110D	ENST00000369026	NM_021960.4	110	gaG/gaC																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156849083	156849083	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	381	627	0	ENST00000524377.1:c.1975G>T	p.Gly659Cys	p.G659C	ENST00000524377	NM_002529.3	659	Ggc/Tgc																																													NEWRECORD																																		
INHA	3623	MSKCC	GRCh37	2	220440202	220440202	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1152	307	916	0	ENST00000243786.2:c.1055A>G	p.Tyr352Cys	p.Y352C	ENST00000243786	NM_002191.3	352	tAt/tGt																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225422567	225422567	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	158	210	0	ENST00000264414.4:c.73A>G	p.Met25Val	p.M25V	ENST00000264414	NM_003590.4	25	Atg/Gtg																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89498397	89498397	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	432	394	0	ENST00000336596.2:c.2369G>T	p.Trp790Leu	p.W790L	ENST00000336596	NM_005233.5	790	tGg/tTg																																													NEWRECORD																																		
MYOD1	4654	MSKCC	GRCh37	11	17741590	17741590	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	151	198	0	ENST00000250003.3:c.261C>A	p.His87Gln	p.H87Q	ENST00000250003	NM_002478.4	87	caC/caA																																													NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64136193	64136193	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	287	403	1	ENST00000334205.4:c.1352A>T	p.Gln451Leu	p.Q451L	ENST00000334205	NM_003942.2	451	cAg/cTg																																													NEWRECORD																																		
FGF19	9965	MSKCC	GRCh37	11	69514163	69514163	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	351	545	0	ENST00000294312.3:c.518C>G	p.Pro173Arg	p.P173R	ENST00000294312	NM_005117.2	173	cCa/cGa																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46245210	46245210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	133	371	0	ENST00000334344.6:c.3304G>T	p.Ala1102Ser	p.A1102S	ENST00000334344	NM_152641.2	1102	Gcc/Tcc																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49416423	49416423	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	398	442	0	ENST00000301067.7:c.16288A>G	p.Ile5430Val	p.I5430V	ENST00000301067	NM_003482.3	5430	Atc/Gtc																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49433848	49433848	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	155	561	1	ENST00000301067.7:c.7705G>T	p.Gly2569Cys	p.G2569C	ENST00000301067	NM_003482.3	2569	Ggc/Tgc																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133257255	133257255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	155	527	0	ENST00000320574.5:c.223G>A	p.Asp75Asn	p.D75N	ENST00000320574	NM_006231.2	75	Gat/Aat																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48953773	48953773	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	35	270	0	ENST00000267163.4:c.1376C>G	p.Ser459Cys	p.S459C	ENST00000267163	NM_000321.2	459	tCc/tGc																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73336139	73336139	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	506	464	0	ENST00000377767.4:c.2264G>T	p.Cys755Phe	p.C755F	ENST00000377767	NM_014953.3	755	tGt/tTt																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95577731	95577731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	855	798	0	ENST00000343455.3:c.2179G>A	p.Asp727Asn	p.D727N	ENST00000343455	NM_177438.2	727	Gat/Aat																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88678582	88678582	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	176	239	0	ENST00000360948.2:c.954G>C	p.Glu318Asp	p.E318D	ENST00000360948	NM_001012338.2	318	gaG/gaC																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88679241	88679241	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	177	538	0	ENST00000360948.2:c.796A>G	p.Ile266Val	p.I266V	ENST00000360948	NM_001012338.2	266	Atc/Gtc																																													NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	364640	364640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	171	466	0	ENST00000262320.3:c.922G>A	p.Ala308Thr	p.A308T	ENST00000262320	NM_003502.3	308	Gcc/Acc																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9923497	9923497	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	242	307	0	ENST00000330684.3:c.1790C>A	p.Pro597His	p.P597H	ENST00000330684	NM_001134407.1	597	cCt/cAt																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9984951	9984951	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	188	549	1	ENST00000330684.3:c.1014G>T	p.Met338Ile	p.M338I	ENST00000330684	NM_001134407.1	338	atG/atT																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89877373	89877373	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	283	392	0	ENST00000389301.3:c.390G>C	p.Glu130Asp	p.E130D	ENST00000389301	NM_000135.2	130	gaG/gaC																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435348	56435348	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	243	361	0	ENST00000407977.2:c.1789C>T	p.Gln597Ter	p.Q597*	ENST00000407977		597	Caa/Taa																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70117639	70117639	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	160	442	1	ENST00000245479.2:c.107C>A	p.Pro36Gln	p.P36Q	ENST00000245479	NM_000346.3	36	cCg/cAg																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	321	546	0	ENST00000326873.7:c.709G>C	p.Asp237His	p.D237H	ENST00000326873	NM_000455.4	237	Gac/Cac																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10270570	10270570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	278	420	0	ENST00000340748.4:c.1070G>A	p.Gly357Glu	p.G357E	ENST00000340748		357	gGg/gAg																																													NEWRECORD																																		
CCNE1	898	MSKCC	GRCh37	19	30313370	30313370	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	406	578	0	ENST00000262643.3:c.970A>G	p.Ile324Val	p.I324V	ENST00000262643	NM_001238.2	324	Ata/Gta																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39932962	39932962	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	366	546	0	ENST00000378444.4:c.1637G>T	p.Arg546Leu	p.R546L	ENST00000378444	NM_001123385.1	546	cGc/cTc																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411396	63411396	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	377	680	0	ENST00000330258.3:c.1771A>T	p.Arg591Trp	p.R591W	ENST00000330258	NM_152424.3	591	Agg/Tgg																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411705	63411705	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	439	702	0	ENST00000330258.3:c.1462G>T	p.Gly488Trp	p.G488W	ENST00000330258	NM_152424.3	488	Ggg/Tgg																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63412862	63412862	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	383	520	1	ENST00000330258.3:c.305C>A	p.Ala102Glu	p.A102E	ENST00000330258	NM_152424.3	102	gCa/gAa																																													NEWRECORD																																		
BTK	695	MSKCC	GRCh37	X	100617192	100617192	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1002	470	713	0	ENST00000308731.7:c.557A>T	p.Lys186Met	p.K186M	ENST00000308731	NM_000061.2	186	aAg/aTg																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123210312	123210312	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	603	454	0	ENST00000218089.9:c.2664G>T	p.Gln888His	p.Q888H	ENST00000218089	NM_001042749.1	888	caG/caT																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11145742	11145742	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	319	538	0	ENST00000344626.4:c.4105del	p.Arg1369ValfsTer15	p.R1369Vfs*15	ENST00000344626	NM_003072.3	1368	ggC/gg																																													NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189604306	189604307	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	403	421	0	ENST00000264731.3:c.1473_1474delinsAA	p.Pro492Thr	p.P492T	ENST00000264731	NM_003722.4	491	acTCct/acAAct																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48954340	48954340	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	TT			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	253	246	0	ENST00000267163.4:c.1461delinsTT	p.Leu487PhefsTer6	p.L487Ffs*6	ENST00000267163	NM_000321.2	487	ttG/ttTT																																													NEWRECORD																																		
HIST1H1C	3006	MSKCC	GRCh37	6	26056588	26056590	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs751086925		P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	63	123	0	ENST00000343677.2:c.67_69del	p.Lys23del	p.K23del	ENST00000343677	NM_005319.3	23	AAG/-																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	296	335	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135772950	135772951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs118203724		P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	47	327	0	ENST00000298552.3:c.2672dup	p.Asn891LysfsTer13	p.N891Kfs*13	ENST00000298552	NM_001162426.1	891	aac/aaAc																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133759623	133759623	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	201	452	2	ENST00000318560.5:c.1950del	p.Leu651TrpfsTer43	p.L651Wfs*43	ENST00000318560	NM_005157.4	649	aCc/ac																																													NEWRECORD																																		
HIST3H3	8290	MSKCC	GRCh37	1	228612948	228612948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1080	271	515	1	ENST00000366696.1:c.79C>T	p.Arg27Cys	p.R27C	ENST00000366696	NM_003493.2	27	Cgc/Tgc																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41268793	41268793	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	56	324	0	ENST00000349496.5:c.1031T>C	p.Leu344Pro	p.L344P	ENST00000349496	NM_001904.3	344	cTg/cCg																																													NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189526163	189526163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	223	413	0	ENST00000264731.3:c.427G>A	p.Val143Ile	p.V143I	ENST00000264731	NM_003722.4	143	Gtc/Atc																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55961103	55961103	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140041720		P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	169	359	0	ENST00000263923.4:c.2837G>A	p.Arg946His	p.R946H	ENST00000263923	NM_002253.2	946	cGt/cAt																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	93967193	93967193	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	183	484	0	ENST00000369303.4:c.2159A>G	p.Asp720Gly	p.D720G	ENST00000369303	NM_004440.3	720	gAt/gGt																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151877208	151877208	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	92	188	0	ENST00000262189.6:c.7153C>T	p.Gln2385Ter	p.Q2385*	ENST00000262189	NM_170606.2	2385	Cag/Tag																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118342437	118342437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	52	350	0	ENST00000534358.1:c.563C>T	p.Ala188Val	p.A188V	ENST00000534358	NM_005933.3	188	gCt/gTt																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	432787	432787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	141	286	0	ENST00000399788.2:c.2129C>A	p.Pro710His	p.P710H	ENST00000399788	NM_001042603.1	710	cCc/cAc																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133235941	133235941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	174	360	0	ENST00000320574.5:c.3215C>T	p.Ala1072Val	p.A1072V	ENST00000320574	NM_006231.2	1072	gCa/gTa																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28931807	28931807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	166	373	0	ENST00000282397.4:c.2132C>T	p.Pro711Leu	p.P711L	ENST00000282397	NM_002019.4	711	cCa/cTa																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061484	38061484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	177	314	0	ENST00000250448.2:c.505G>A	p.Ala169Thr	p.A169T	ENST00000250448	NM_004496.3	169	Gcc/Acc																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2134632	2134632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	151	346	1	ENST00000219476.3:c.4409G>A	p.Arg1470His	p.R1470H	ENST00000219476	NM_000548.3	1470	cGc/cAc																																													NEWRECORD																																		
SOCS1	8651	MSKCC	GRCh37	16	11348806	11348806	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	19	108	0	ENST00000332029.2:c.530T>C	p.Leu177Pro	p.L177P	ENST00000332029	NM_003745.1	177	cTg/cCg																																													NEWRECORD																																		
RARA	5914	MSKCC	GRCh37	17	38512401	38512401	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	67	308	0	ENST00000254066.5:c.1312G>C	p.Ala438Pro	p.A438P	ENST00000254066	NM_000964.3	438	Gcc/Ccc																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70120199	70120199	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	49	315	0	ENST00000245479.2:c.1201C>T	p.Gln401Ter	p.Q401*	ENST00000245479	NM_000346.3	401	Cag/Tag																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15291782	15291782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	159	298	0	ENST00000263388.2:c.2984C>T	p.Pro995Leu	p.P995L	ENST00000263388	NM_000435.2	995	cCg/cTg																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63412635	63412635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	153	432	2	ENST00000330258.3:c.532C>T	p.Arg178Cys	p.R178C	ENST00000330258	NM_152424.3	178	Cgt/Tgt																																													NEWRECORD																																		
CBL	867	MSKCC	GRCh37	11	119145603	119145604	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	201	331	0	ENST00000264033.4:c.815dup	p.Leu272PhefsTer4	p.L272Ffs*4	ENST00000264033	NM_005188.3	270	gct/gcTt																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152415640	152415641	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	130	368	0	ENST00000206249.3:c.1500_1502dup	p.Gln500dup	p.Q500dup	ENST00000206249	NM_000125.3	500	ctg/ctGCAg																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56160762	56160762	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0004316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			46	41	342	0	ENST00000399503.3:c.1035+1G>T		p.X345_splice	ENST00000399503	NM_005921.1	345																																														NEWRECORD																																		
NTRK2	4915	MSKCC	GRCh37	9	87549094	87549094	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	12	398	0	ENST00000277120.3:c.1651C>T	p.Arg551Ter	p.R551*	ENST00000277120		551	Cga/Tga																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89692791	89692791	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			57	30	251	0	ENST00000371953.3:c.275A>T	p.Asp92Val	p.D92V	ENST00000371953	NM_000314.4	92	gAc/gTc																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115118706	115118706	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	27	400	0	ENST00000257566.3:c.635A>T	p.Asn212Ile	p.N212I	ENST00000257566	NM_016569.3	212	aAc/aTc																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36164867	36164868	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	47	224	0	ENST00000300305.3:c.1007dup	p.Ala338ArgfsTer262	p.A338Rfs*262	ENST00000300305		336	ttc/ttTc																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56170864	56170865	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	21	311	0	ENST00000399503.3:c.1694dup	p.Met566AsnfsTer10	p.M566Nfs*10	ENST00000399503	NM_005921.1	564	-/G																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	278	407	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	191	289	0	ENST00000269305.4:c.406C>G	p.Gln136Glu	p.Q136E	ENST00000269305	NM_001126112.2	136	Caa/Gaa																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52610608	52610609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	296	534	0	ENST00000394830.3:c.3564dup	p.Glu1189ArgfsTer6	p.E1189Rfs*6	ENST00000394830	NM_018313.4	1188	-/A																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178919264	178919264	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	240	396	0	ENST00000263967.3:c.749A>T	p.Tyr250Phe	p.Y250F	ENST00000263967	NM_006218.2	250	tAt/tTt																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66217211	66217211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	106	473	0	ENST00000273854.3:c.2404G>A	p.Ala802Thr	p.A802T	ENST00000273854	NM_004439.5	802	Gct/Act																																													NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64137834	64137834	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	51	454	0	ENST00000334205.4:c.1935G>T	p.Glu645Asp	p.E645D	ENST00000334205	NM_003942.2	645	gaG/gaT																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48593507	48593507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	290	312	0	ENST00000342988.3:c.1258C>T	p.Arg420Cys	p.R420C	ENST00000342988	NM_005359.5	420	Cgt/Tgt																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36252875	36252875	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	195	436	0	ENST00000300305.3:c.487T>G	p.Phe163Val	p.F163V	ENST00000300305		163	Ttt/Gtt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106313	27106314	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0003870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	141	362	0	ENST00000324856.7:c.5924_5925del	p.Asp1975ValfsTer23	p.D1975Vfs*23	ENST00000324856	NM_006015.4	1975	gAT/g																																													NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215646129	215646131	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0003870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1570	201	382	0	ENST00000260947.4:c.467_469del	p.Tyr156_Val157delinsPhe	p.Y156_V157delinsF	ENST00000260947	NM_000465.2	156	tATGtt/ttt																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880984	37880985	+	inframe_insertion	In_Frame_Ins	INS	-	-	TACGTGATGGCT			P-0006965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	422	567	0	ENST00000269571.5:c.2314_2325dupTACGTGATGGCT	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/TACGTGATGGCT																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577543	7577543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	203	572	0	ENST00000269305.4:c.738G>A	p.Met246Ile	p.M246I	ENST00000269305	NM_001126112.2	246	atG/atA																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971179	21971179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs36204594		P-0006965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	33	197	0	ENST00000304494.5:c.179C>T	p.Ala60Val	p.A60V	ENST00000304494	NM_000077.4	60	gCg/gTg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	211	683	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	92	660	1	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0013993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1158	42	707	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18439857	18439858	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1100	77	577	1	ENST00000266497.5:c.761dup	p.Ile255AsnfsTer9	p.I255Nfs*9	ENST00000266497		252	gta/gtAa																																													NEWRECORD																																		
MAPK3	5595	MSKCC	GRCh37	16	30128292	30128292	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1796	294	1291	0	ENST00000263025.4:c.940A>C	p.Asn314His	p.N314H	ENST00000263025	NM_002746.2	314	Aac/Cac																																													NEWRECORD																																		
BCL2	596	MSKCC	GRCh37	18	60985521	60985521	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	137	759	4	ENST00000333681.4:c.379C>T	p.Arg127Trp	p.R127W	ENST00000333681		127	Cgg/Tgg																																													NEWRECORD																																		
KIT	3815	MSKCC	GRCh37	4	55561764	55561764	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	36	641	3	ENST00000288135.5:c.154G>T	p.Asp52Tyr	p.D52Y	ENST00000288135	NM_000222.2	52	Gac/Tac																																													NEWRECORD																																		
PARK2	5071	MSKCC	GRCh37	6	162394430	162394430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	174	741	0	ENST00000366898.1:c.638G>C	p.Gly213Ala	p.G213A	ENST00000366898	NM_004562.2	213	gGa/gCa																																													NEWRECORD																																		
ARAF	369	MSKCC	GRCh37	X	47428200	47428200	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1141	320	1157	0	ENST00000377045.4:c.1160G>T	p.Gly387Val	p.G387V	ENST00000377045	NM_001654.4	387	gGc/gTc																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151835904	151835904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	19	462	1	ENST00000262189.6:c.14620C>T	p.Arg4874Trp	p.R4874W	ENST00000262189	NM_170606.2	4874	Cgg/Tgg																																													NEWRECORD																																		
CSF1R	1436	MSKCC	GRCh37	5	149460417	149460417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	13	611	1	ENST00000286301.3:c.220G>A	p.Ala74Thr	p.A74T	ENST00000286301	NM_005211.3	74	Gct/Act																																													NEWRECORD																																		
ARAF	369	MSKCC	GRCh37	X	47422384	47422384	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	14	352	2	ENST00000377045.4:c.23del	p.Pro8LeufsTer26	p.P8Lfs*26	ENST00000377045	NM_001654.4	6	ggC/gg																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67591115	67591116	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	23	343	0	ENST00000274335.5:c.1710dupT	p.Ile571TyrfsTer31	p.I571Yfs*31	ENST00000274335		570	ctt/cTtt																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89693003	89693003	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	18	219	0	ENST00000371953.3:c.491del	p.Lys164ArgfsTer3	p.K164Rfs*3	ENST00000371953	NM_000314.4	163	Aaa/aa																																													NEWRECORD																																		
CDKN2C	1031	MSKCC	GRCh37	1	51439586	51439586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	19	428	0	ENST00000262662.1:c.151G>A	p.Glu51Lys	p.E51K	ENST00000262662		51	Gag/Aag																																													NEWRECORD																																		
SDHA	6389	MSKCC	GRCh37	5	231046	231046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	17	518	3	ENST00000264932.6:c.826G>A	p.Gly276Ser	p.G276S	ENST00000264932	NM_004168.2	276	Ggc/Agc																																													NEWRECORD																																		
PLK2	10769	MSKCC	GRCh37	5	57751979	57751979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	19	449	0	ENST00000274289.3:c.1258C>T	p.Leu420Phe	p.L420F	ENST00000274289	NM_006622.3	420	Ctc/Ttc																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42041117	42041117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	22	894	3	ENST00000219905.7:c.5495G>A	p.Arg1832Gln	p.R1832Q	ENST00000219905	NM_001164273.1	1832	cGg/cAg																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37627177	37627177	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	16	450	0	ENST00000447079.4:c.1092A>T	p.Arg364Ser	p.R364S	ENST00000447079	NM_015083.1	364	agA/agT																																													NEWRECORD																																		
PIK3R2	5296	MSKCC	GRCh37	19	18273217	18273217	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	13	726	0	ENST00000222254.8:c.1011-1G>T		p.X337_splice	ENST00000222254	NM_005027.3	337																																														NEWRECORD																																		
U2AF1	7307	MSKCC	GRCh37	21	44515807	44515807	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	17	505	0	ENST00000291552.4:c.246del	p.Phe82LeufsTer15	p.F82Lfs*15	ENST00000291552	NM_006758.2	82	ttT/tt																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65321268	65321269	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	12	410	0	ENST00000342505.4:c.1571dup	p.Ser524ArgfsTer12	p.S524Rfs*12	ENST00000342505	NM_002227.2	524	agc/agGc																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29560181	29560181	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	31	282	1	ENST00000358273.4:c.3658G>T	p.Glu1220Ter	p.E1220*	ENST00000358273	NM_001042492.2	1220	Gaa/Taa																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65325822	65325822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	37	240	0	ENST00000342505.4:c.1300C>T	p.His434Tyr	p.H434Y	ENST00000342505	NM_002227.2	434	Cac/Tac																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47630377	47630377	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	32	242	0	ENST00000233146.2:c.47A>C	p.Glu16Ala	p.E16A	ENST00000233146	NM_000251.2	16	gAg/gCg																																													NEWRECORD																																		
MLH1	4292	MSKCC	GRCh37	3	37092115	37092115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	51	475	0	ENST00000231790.2:c.2242G>A	p.Asp748Asn	p.D748N	ENST00000231790	NM_000249.3	748	Gat/Aat																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81934333	81934333	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	24	462	0	ENST00000359376.3:c.1310G>C	p.Ser437Thr	p.S437T	ENST00000359376	NM_002661.3	437	aGt/aCt																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41245210	41245210	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	31	454	0	ENST00000357654.3:c.2338C>G	p.Gln780Glu	p.Q780E	ENST00000357654	NM_007294.3	780	Cag/Gag																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45375012	45375012	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	40	346	0	ENST00000262160.6:c.831A>G	p.Ile277Met	p.I277M	ENST00000262160	NM_005901.5	277	atA/atG																																													NEWRECORD																																		
JAK2	3717	MSKCC	GRCh37	9	5069132	5069178	+	frameshift_variant	Frame_Shift_Del	DEL	TTGTTACCAGATGGAAACTGTTCGCTCAGACAATATAATTTTCCAGT	TTGTTACCAGATGGAAACTGTTCGCTCAGACAATATAATTTTCCAGT	-			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	34	416	0	ENST00000381652.3:c.1439_1485del	p.Cys480TyrfsTer2	p.C480Yfs*2	ENST00000381652	NM_004972.3	479	aaTTGTTACCAGATGGAAACTGTTCGCTCAGACAATATAATTTTCCAGTtt/aatt																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2210502	2210502	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	21	253	0	ENST00000398665.3:c.1113del	p.Met372TrpfsTer15	p.M372Wfs*15	ENST00000398665	NM_032482.2	370	gCc/gc																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10602501	10602511	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCAGGTCCG	CTGCAGGTCCG	-			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	24	249	0	ENST00000171111.5:c.1067_1077del	p.Ala356GlyfsTer55	p.A356Gfs*55	ENST00000171111	NM_203500.1	356	gCGGACCTGCAG/g																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86681204	86681204	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	38	255	0	ENST00000274376.6:c.2846del	p.Lys949ArgfsTer19	p.K949Rfs*19	ENST00000274376	NM_002890.2	949	Aag/ag																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55973912	55973913	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	25	231	0	ENST00000263923.4:c.1403dup	p.Asn468LysfsTer16	p.N468Kfs*16	ENST00000263923	NM_002253.2	468	aac/aaAc																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116399449	116399449	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	43	484	0	ENST00000397752.3:c.2271del	p.Ser758AlafsTer3	p.S758Afs*3	ENST00000397752	NM_000245.2	757	Ggg/gg																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0005216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	259	266	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	775	552	0	ENST00000288602.6:c.1397G>A	p.Gly466Glu	p.G466E	ENST00000288602	NM_004333.4	466	gGa/gAa																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46243561	46243561	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0005216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	206	267	1	ENST00000334344.6:c.1912+2T>G		p.X638_splice	ENST00000334344	NM_152641.2	638																																														NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061193	38061193	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	170	367	0	ENST00000250448.2:c.796T>G	p.Phe266Val	p.F266V	ENST00000250448	NM_004496.3	266	Ttc/Gtc																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9857070	9857070	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	330	557	0	ENST00000330684.3:c.4331T>A	p.Val1444Asp	p.V1444D	ENST00000330684	NM_001134407.1	1444	gTt/gAt																																													NEWRECORD																																		
SPOP	8405	MSKCC	GRCh37	17	47696435	47696435	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	373	512	0	ENST00000347630.2:c.388G>C	p.Asp130His	p.D130H	ENST00000347630	NM_001007230.1	130	Gac/Cac																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577517	7577518	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	473	514	0	ENST00000269305.4:c.763dup	p.Ile255AsnfsTer9	p.I255Nfs*9	ENST00000269305	NM_001126112.2	255	atc/aAtc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	429	601	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56177011	56177014	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0006249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	111	426	0	ENST00000399503.3:c.2286_2289delTAGA	p.Arg763CysfsTer35	p.R763Cfs*35	ENST00000399503	NM_005921.1	761	ATAGat/at																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	149983017	149983017	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	172	638	2	ENST00000253339.5:c.3241C>T	p.Arg1081Ter	p.R1081*	ENST00000253339		1081	Cga/Tga																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8499771	8499771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	184	587	1	ENST00000356435.5:c.2198G>A	p.Arg733His	p.R733H	ENST00000356435		733	cGc/cAc																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18491373	18491373	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	255	434	0	ENST00000266497.5:c.1286A>G	p.Asn429Ser	p.N429S	ENST00000266497		429	aAt/aGt																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57859039	57859039	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0006249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	150	704	0	ENST00000228682.2:c.534+1G>A		p.X178_splice	ENST00000228682	NM_005269.2	178																																														NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3830754	3830754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	163	494	1	ENST00000262367.5:c.1802G>A	p.Arg601Gln	p.R601Q	ENST00000262367	NM_004380.2	601	cGg/cAg																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45374853	45374853	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	71	427	0	ENST00000262160.6:c.990G>T	p.Arg330Ser	p.R330S	ENST00000262160	NM_005901.5	330	agG/agT																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5229569	5229569	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	40	168	0	ENST00000357368.4:c.2282T>A	p.Val761Glu	p.V761E	ENST00000357368	NM_002850.3	761	gTg/gAg																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56184093	56184094	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	AC			P-0006249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	126	563	0	ENST00000399503.3:c.4298_4299insAC	p.Trp1433Ter	p.W1433*	ENST00000399503	NM_005921.1	1433	tgg/tgACg																																													NEWRECORD																																		
CDKN1B	1027	MSKCC	GRCh37	12	12870888	12870888	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	252	328	0	ENST00000228872.4:c.115G>T	p.Glu39Ter	p.E39*	ENST00000228872	NM_004064.3	39	Gaa/Taa																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	41961308	41961308	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	370	626	0	ENST00000219905.7:c.218del	p.Gly73ValfsTer23	p.G73Vfs*23	ENST00000219905	NM_001164273.1	72	gtG/gt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579837	7579838	+	splice_donor_variant	Splice_Site	INS	-	-	CAGTTTCC			P-0006994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	263	421	0	ENST00000269305.4:c.68_74+1dup		p.X23_splice	ENST00000269305	NM_001126112.2	23																																														NEWRECORD																																		
NKX3-1	4824	MSKCC	GRCh37	8	23538906	23538907	+	inframe_insertion	In_Frame_Ins	INS	-	-	TATAGCGTC			P-0006994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	254	431	0	ENST00000380871.4:c.524_532dup	p.Arg175_Tyr177dup	p.R175_Y177dup	ENST00000380871	NM_006167.3	175	aag/aGACGCTATAag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0003183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	81	403	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0003183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	127	233	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	44	234	0	ENST00000288602.6:c.1781A>T	p.Asp594Val	p.D594V	ENST00000288602	NM_004333.4	594	gAt/gTt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	308	360	0	ENST00000257430.4:c.4364delA	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0003183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	303	372	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114920413	114920413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	415	471	0	ENST00000543371.1:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000543371	NM_001198531.1	452	Ggg/Agg																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925435	114925435	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	349	508	0	ENST00000543371.1:c.1513C>T	p.Arg505Ter	p.R505*	ENST00000543371	NM_001198531.1	505	Cga/Tga																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29588835	29588836	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	55	410	0	ENST00000358273.4:c.4686dup	p.Asn1563Ter	p.N1563*	ENST00000358273	NM_001042492.2	1562	ctt/cTtt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	347	305	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187630465	187630465	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1439256953		P-0003210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	162	402	0	ENST00000441802.2:c.517G>A	p.Ala173Thr	p.A173T	ENST00000441802	NM_005245.3	173	Gcc/Acc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175153	112175153	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	168	179	0	ENST00000257430.4:c.3862G>T	p.Gly1288Ter	p.G1288*	ENST00000257430	NM_000038.5	1288	Gga/Tga																																													NEWRECORD																																		
E2F3	1871	MSKCC	GRCh37	6	20488427	20488427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	133	356	0	ENST00000346618.3:c.1083G>A	p.Met361Ile	p.M361I	ENST00000346618	NM_001949.4	361	atG/atA																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9934918	9934918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	119	329	0	ENST00000330684.3:c.1372G>A	p.Gly458Arg	p.G458R	ENST00000330684	NM_001134407.1	458	Ggg/Agg																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76938562	76938562	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	117	412	1	ENST00000373344.5:c.2186C>A	p.Ser729Ter	p.S729*	ENST00000373344	NM_000489.3	729	tCa/tAa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112111408	112111411	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0003210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	170	269	0	ENST00000257430.4:c.509_512del	p.Asp170ValfsTer4	p.D170Vfs*4	ENST00000257430	NM_000038.5	169	ATAGat/at																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114900944	114900945	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0003210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	207	343	0	ENST00000543371.1:c.555dup	p.Asn186Ter	p.N186*	ENST00000543371	NM_001198531.1	185	tct/tcTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0001383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			96	76	279	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			212	144	288	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27059260	27059260	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			280	106	394	0	ENST00000324856.7:c.1897C>T	p.Gln633Ter	p.Q633*	ENST00000324856	NM_006015.4	633	Cag/Tag																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46246671	46246671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			113	27	96	0	ENST00000334344.6:c.4765G>T	p.Val1589Phe	p.V1589F	ENST00000334344	NM_152641.2	1589	Gtc/Ttc																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49447892	49447892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	29	139	0	ENST00000301067.7:c.542C>T	p.Ser181Phe	p.S181F	ENST00000301067	NM_003482.3	181	tCc/tTc																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56491692	56491692	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			235	34	341	0	ENST00000267101.3:c.2584G>C	p.Asp862His	p.D862H	ENST00000267101	NM_001982.3	862	Gat/Cat																																													NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28623559	28623559	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0001383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			118	25	251	0	ENST00000241453.7:c.998C>G	p.Ser333Ter	p.S333*	ENST00000241453	NM_004119.2	333	tCa/tGa																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103527709	103527709	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			221	87	267	0	ENST00000355739.4:c.3017A>C	p.Asp1006Ala	p.D1006A	ENST00000355739	NM_000123.3	1006	gAt/gCt																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29557904	29557904	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0001383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			72	47	144	0	ENST00000358273.4:c.3158C>G	p.Ser1053Ter	p.S1053*	ENST00000358273	NM_001042492.2	1053	tCa/tGa																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86658489	86658490	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0001383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	39	278	0	ENST00000274376.6:c.1453+2dup		p.X485_splice	ENST00000274376	NM_002890.2	485																																														NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	11984696	11984697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0001383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			59	36	87	0	ENST00000353533.5:c.243_244insAT	p.Glu82MetfsTer7	p.E82Mfs*7	ENST00000353533	NM_003010.3	81	att/atTAt																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0004359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	789	215	0	ENST00000269571.5:c.2331_2339dupGGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	435	112	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																													NEWRECORD																																		
STAT3	6774	MSKCC	GRCh37	17	40498697	40498697	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1110	381	364	0	ENST00000264657.5:c.163T>G	p.Leu55Val	p.L55V	ENST00000264657	NM_139276.2	55	Ttg/Gtg																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9546984	9546985	+	missense_variant	Missense_Mutation	DNP	CC	CC	GA			P-0004359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	18	93	0	ENST00000353224.5:c.1037_1038delinsTC	p.Gly346Val	p.G346V	ENST00000353224	NM_177990.2	346	gGG/gTC																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	110	323	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	96	388	0	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	98	342	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	89	307	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1294372	1294372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	48	142	0	ENST00000310581.5:c.629C>T	p.Ala210Val	p.A210V	ENST00000310581	NM_198253.2	210	gCc/gTc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764146326		P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	52	414	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	92	291	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																													NEWRECORD																																		
E2F3	1871	MSKCC	GRCh37	6	20402537	20402537	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	15	75	0	ENST00000346618.3:c.74T>C	p.Val25Ala	p.V25A	ENST00000346618	NM_001949.4	25	gTc/gCc																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56439924	56439924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	52	134	1	ENST00000407977.2:c.668G>A	p.Arg223His	p.R223H	ENST00000407977		223	cGc/cAc																																													NEWRECORD																																		
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1002	131	491	6	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																													NEWRECORD																																		
NEGR1	257194	MSKCC	GRCh37	1	72058529	72058529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1047	151	460	0	ENST00000357731.5:c.911G>A	p.Gly304Asp	p.G304D	ENST00000357731	NM_173808.2	304	gGc/gAc																																													NEWRECORD																																		
MLH1	4292	MSKCC	GRCh37	3	37042530	37042530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	123	374	0	ENST00000231790.2:c.292G>A	p.Gly98Ser	p.G98S	ENST00000231790	NM_000249.3	98	Ggc/Agc																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1294223	1294223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	52	170	0	ENST00000310581.5:c.778G>A	p.Gly260Ser	p.G260S	ENST00000310581	NM_198253.2	260	Ggc/Agc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112164611	112164611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	74	241	0	ENST00000257430.4:c.1685C>T	p.Thr562Met	p.T562M	ENST00000257430	NM_000038.5	562	aCg/aTg																																													NEWRECORD																																		
INHBA	3624	MSKCC	GRCh37	7	41739599	41739599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	120	368	0	ENST00000242208.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000242208	NM_002192.2	125	aCg/aTg																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21994291	21994291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	61	240	0	ENST00000361570.3:c.163G>A	p.Ala55Thr	p.A55T	ENST00000361570	NM_058195.3	55	Gcg/Acg																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717778	89717778	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	21	146	0	ENST00000371953.3:c.801+2T>C		p.X267_splice	ENST00000371953	NM_000314.4	267																																														NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114912171	114912171	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1272	78	485	0	ENST00000543371.1:c.1241A>G	p.Tyr414Cys	p.Y414C	ENST00000543371	NM_001198531.1	414	tAc/tGc																																													NEWRECORD																																		
HNF1A	6927	MSKCC	GRCh37	12	121416701	121416701	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	98	360	0	ENST00000257555.6:c.130C>G	p.Leu44Val	p.L44V	ENST00000257555		44	Ctg/Gtg																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110435414	110435414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	46	138	0	ENST00000375856.3:c.2987G>A	p.Gly996Asp	p.G996D	ENST00000375856	NM_003749.2	996	gGc/gAc																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101401	27101402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	39	280	0	ENST00000324856.7:c.4689dup	p.Met1564HisfsTer8	p.M1564Hfs*8	ENST00000324856	NM_006015.4	1561	-/C																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16260214	16260214	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	47	144	0	ENST00000375759.3:c.7484delC	p.Pro2495LeufsTer4	p.P2495Lfs*4	ENST00000375759	NM_015001.2	2493	agC/ag																																													NEWRECORD																																		
NCOA3	8202	MSKCC	GRCh37	20	46265048	46265049	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	133	529	0	ENST00000371998.3:c.1924dup	p.Leu642ProfsTer6	p.L642Pfs*6	ENST00000371998		640	tcc/tCcc																																													NEWRECORD																																		
JUN	3725	MSKCC	GRCh37	1	59247903	59247904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1179	185	506	0	ENST00000371222.2:c.839dup	p.Glu281GlyfsTer29	p.E281Gfs*29	ENST00000371222	NM_002228.3	280	ctg/ctTg																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28964077	28964077	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	100	371	0	ENST00000282397.4:c.1825del	p.Met609TrpfsTer16	p.M609Wfs*16	ENST00000282397	NM_002019.4	609	Atg/tg																																													NEWRECORD																																		
PAX5	5079	MSKCC	GRCh37	9	36882049	36882050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	90	314	0	ENST00000358127.4:c.963dupC	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	-/C																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42794441	42794441	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	121	458	1	ENST00000575354.2:c.1526delC	p.Pro509HisfsTer14	p.P509Hfs*14	ENST00000575354	NM_015125.3	507	cgC/cg																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	107	346	0	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49433874	49433875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	60	302	0	ENST00000301067.7:c.7678dup	p.His2560ProfsTer95	p.H2560Pfs*95	ENST00000301067	NM_003482.3	2560	cat/cCat																																													NEWRECORD																																		
TSHR	7253	MSKCC	GRCh37	14	81554355	81554355	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	108	391	2	ENST00000298171.2:c.379del	p.Leu127SerfsTer2	p.L127Sfs*2	ENST00000298171	NM_000369.2	125	ctC/ct																																													NEWRECORD																																		
JUN	3725	MSKCC	GRCh37	1	59247812	59247813	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1370	225	511	0	ENST00000371222.2:c.930_931delGA	p.Lys311SerfsTer6	p.K311Sfs*6	ENST00000371222	NM_002228.3	310	caGAaa/caaa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174783	112174783	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	92	293	0	ENST00000257430.4:c.3495del	p.Lys1165AsnfsTer17	p.K1165Nfs*17	ENST00000257430	NM_000038.5	1164	atA/at																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	103	290	0				ENST00000310581	NM_198253.2																																															NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0005950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	272	606	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56161795	56161795	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	58	340	0	ENST00000399503.3:c.1292C>A	p.Ser431Ter	p.S431*	ENST00000399503	NM_005921.1	431	tCa/tAa																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103527792	103527792	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	138	628	0	ENST00000355739.4:c.3100A>G	p.Ile1034Val	p.I1034V	ENST00000355739	NM_000123.3	1034	Ata/Gta																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56167801	56167802	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	142	513	0	ENST00000399503.3:c.1368dupT	p.Thr457TyrfsTer4	p.T457Yfs*4	ENST00000399503	NM_005921.1	456	ctt/cTtt																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061218	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCCGTTCTCGAACATGTT	GCCGTTCTCGAACATGTT	-			P-0005950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	131	368	0	ENST00000250448.2:c.754_771del	p.Asn252_Gly257del	p.N252_G257del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGC/-																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53240740	53240752	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGAATGGATGT	TTGGAATGGATGT	GA			P-0005950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	294	741	0	ENST00000375401.3:c.1328_1340delinsTC	p.Asp443ValfsTer11	p.D443Vfs*11	ENST00000375401	NM_004187.3	443	gACATCCATTCCAAa/gTCa																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156846308	156846308	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	52	461	0	ENST00000524377.1:c.1753delC	p.Leu585CysfsTer73	p.L585Cfs*73	ENST00000524377	NM_002529.3	583	cgC/cg																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	293	401	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	257	143	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	40	128	1	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	83	308	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	124	399	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	255	417	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																													NEWRECORD																																		
HIST1H1C	3006	MSKCC	GRCh37	6	26056588	26056590	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs751086925		P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	88	159	0	ENST00000343677.2:c.67_69del	p.Lys23del	p.K23del	ENST00000343677	NM_005319.3	23	AAG/-																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53247039	53247039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	289	341	0	ENST00000375401.3:c.461G>A	p.Arg154His	p.R154H	ENST00000375401	NM_004187.3	154	cGc/cAc																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68849663	68849663	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	118	314	0	ENST00000261769.5:c.1565+1G>A		p.X522_splice	ENST00000261769	NM_004360.3	522																																														NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48573505	48573506	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	342	448	0	ENST00000342988.3:c.94_95delAG	p.Ser32Ter	p.S32*	ENST00000342988	NM_005359.5	30	gGA/g																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41765459	41765459	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	152	379	0	ENST00000301178.4:c.2335T>C	p.Tyr779His	p.Y779H	ENST00000301178	NM_021913.4	779	Tat/Cat																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46287469	46287469	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	270	359	0	ENST00000334344.6:c.5333del	p.Asn1778IlefsTer13	p.N1778Ifs*13	ENST00000334344	NM_152641.2	1776	ttA/tt																																													NEWRECORD																																		
RHOA	387	MSKCC	GRCh37	3	49412913	49412913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	239	543	0	ENST00000418115.1:c.110C>T	p.Thr37Ile	p.T37I	ENST00000418115	NM_001664.2	37	aCa/aTa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	231	352	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	213	584	2	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47084146	47084146	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	195	379	0	ENST00000409792.3:c.7143del	p.Ser2382LeufsTer29	p.S2382Lfs*29	ENST00000409792	NM_014159.6	2381	ccC/cc																																													NEWRECORD																																		
IKBKE	9641	MSKCC	GRCh37	1	206648328	206648328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	107	384	0	ENST00000367120.3:c.349C>T	p.Arg117Cys	p.R117C	ENST00000367120	NM_014002.3	117	Cgc/Tgc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5214591	5214591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	139	471	1	ENST00000357368.4:c.4475G>A	p.Arg1492Gln	p.R1492Q	ENST00000357368	NM_002850.3	1492	cGg/cAg																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32188854	32188854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1183058401		P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	98	422	0	ENST00000375023.3:c.700C>T	p.Arg234Trp	p.R234W	ENST00000375023	NM_004557.3	234	Cgg/Tgg																																													NEWRECORD																																		
PIK3CD	5293	MSKCC	GRCh37	1	9780684	9780684	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	123	428	0	ENST00000377346.4:c.1486C>T	p.Arg496Ter	p.R496*	ENST00000377346	NM_005026.3	496	Cga/Tga																																													NEWRECORD																																		
CDKN2C	1031	MSKCC	GRCh37	1	51439586	51439586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	270	326	0	ENST00000262662.1:c.151G>A	p.Glu51Lys	p.E51K	ENST00000262662		51	Gag/Aag																																													NEWRECORD																																		
IKBKE	9641	MSKCC	GRCh37	1	206658601	206658601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	187	484	0	ENST00000367120.3:c.1574G>A	p.Arg525Gln	p.R525Q	ENST00000367120	NM_014002.3	525	cGg/cAg																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25523049	25523049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	134	413	0	ENST00000264709.3:c.136C>T	p.Arg46Trp	p.R46W	ENST00000264709	NM_175629.2	46	Cgg/Tgg																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47693887	47693887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	303	459	1	ENST00000233146.2:c.1601G>A	p.Arg534His	p.R534H	ENST00000233146	NM_000251.2	534	cGt/cAt																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47709924	47709924	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	267	375	0	ENST00000233146.2:c.2641G>T	p.Glu881Ter	p.E881*	ENST00000233146	NM_000251.2	881	Gaa/Taa																																													NEWRECORD																																		
INPP4A	3631	MSKCC	GRCh37	2	99170929	99170929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	194	439	1	ENST00000074304.5:c.1558G>A	p.Val520Met	p.V520M	ENST00000074304	NM_001134224.1	520	Gtg/Atg																																													NEWRECORD																																		
ERCC3	2071	MSKCC	GRCh37	2	128036942	128036942	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	163	376	0	ENST00000285398.2:c.1537C>A	p.Pro513Thr	p.P513T	ENST00000285398	NM_000122.1	513	Cct/Act																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227662554	227662554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	84	345	1	ENST00000305123.5:c.901C>T	p.Arg301Cys	p.R301C	ENST00000305123	NM_005544.2	301	Cgc/Tgc																																													NEWRECORD																																		
RHOA	387	MSKCC	GRCh37	3	49397700	49397700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	218	463	0	ENST00000418115.1:c.524C>T	p.Thr175Met	p.T175M	ENST00000418115	NM_001664.2	175	aCg/aTg																																													NEWRECORD																																		
RYBP	23429	MSKCC	GRCh37	3	72427588	72427588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	228	402	2	ENST00000477973.2:c.900G>A	p.Arg301His	p.R301H	ENST00000477973	NM_012234.5	301	cGt/cAt																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143003184	143003184	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	317	405	0	ENST00000262992.4:c.2642G>T	p.Arg881Ile	p.R881I	ENST00000262992	NM_001101669.1	881	aGa/aTa																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153332544	153332544	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	373	436	0	ENST00000281708.4:c.412A>G	p.Thr138Ala	p.T138A	ENST00000281708	NM_033632.3	138	Aca/Gca																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187628547	187628547	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	387	509	0	ENST00000441802.2:c.2435T>C	p.Val812Ala	p.V812A	ENST00000441802	NM_005245.3	812	gTt/gCt																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1293458	1293458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	76	335	0	ENST00000310581.5:c.1543C>T	p.Arg515Trp	p.R515W	ENST00000310581	NM_198253.2	515	Cgg/Tgg																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38991049	38991049	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	190	236	0	ENST00000357387.3:c.583+2T>C		p.X195_splice	ENST00000357387	NM_152756.3	195																																														NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131895051	131895051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	124	199	0	ENST00000265335.6:c.205G>A	p.Asp69Asn	p.D69N	ENST00000265335		69	Gat/Aat																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131923258	131923258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	148	174	0	ENST00000265335.6:c.761G>A	p.Arg254His	p.R254H	ENST00000265335		254	cGt/cAt																																													NEWRECORD																																		
CSF1R	1436	MSKCC	GRCh37	5	149441394	149441394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	100	302	1	ENST00000286301.3:c.1645C>T	p.Arg549Cys	p.R549C	ENST00000286301	NM_005211.3	549	Cgc/Tgc																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149500865	149500865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	103	403	0	ENST00000261799.4:c.2365G>A	p.Ala789Thr	p.A789T	ENST00000261799	NM_002609.3	789	Gca/Aca																																													NEWRECORD																																		
HIST1H1C	3006	MSKCC	GRCh37	6	26056284	26056284	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	205	327	0	ENST00000343677.2:c.373G>T	p.Gly125Ter	p.G125*	ENST00000343677	NM_005319.3	125	Gga/Tga																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117715871	117715871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	283	348	0	ENST00000368508.3:c.887C>T	p.Ser296Phe	p.S296F	ENST00000368508	NM_002944.2	296	tCc/tTc																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157527835	157527835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	235	392	1	ENST00000346085.5:c.5560G>T	p.Gly1854Cys	p.G1854C	ENST00000346085	NM_020732.3	1854	Ggt/Tgt																																													NEWRECORD																																		
ETV1	2115	MSKCC	GRCh37	7	13940458	13940458	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	198	258	0	ENST00000405192.2:c.1048C>T	p.Arg350Ter	p.R350*	ENST00000405192	NM_001163147.1	350	Cga/Tga																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106508556	106508556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	108	173	1	ENST00000359195.3:c.550C>T	p.Arg184Cys	p.R184C	ENST00000359195	NM_002649.2	184	Cgc/Tgc																																													NEWRECORD																																		
JAK2	3717	MSKCC	GRCh37	9	5081749	5081749	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	230	334	0	ENST00000381652.3:c.2459A>T	p.Asp820Val	p.D820V	ENST00000381652	NM_004972.3	820	gAc/gTc																																													NEWRECORD																																		
SYK	6850	MSKCC	GRCh37	9	93606431	93606431	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	122	320	0	ENST00000375746.1:c.251G>C	p.Ser84Thr	p.S84T	ENST00000375746	NM_001174167.1	84	aGc/aCc																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135797289	135797289	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	363	407	0	ENST00000298552.3:c.580A>T	p.Met194Leu	p.M194L	ENST00000298552	NM_001162426.1	194	Atg/Ttg																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70406048	70406048	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199726871		P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	250	400	0	ENST00000373644.4:c.3562G>A	p.Asp1188Asn	p.D1188N	ENST00000373644	NM_030625.2	1188	Gac/Aac																																													NEWRECORD																																		
FGF19	9965	MSKCC	GRCh37	11	69518512	69518512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	163	288	0	ENST00000294312.3:c.133C>T	p.Arg45Trp	p.R45W	ENST00000294312	NM_005117.2	45	Cgg/Tgg																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56480404	56480404	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	214	536	0	ENST00000267101.3:c.511G>T	p.Asp171Tyr	p.D171Y	ENST00000267101	NM_001982.3	171	Gat/Tat																																													NEWRECORD																																		
PTPN11	5781	MSKCC	GRCh37	12	112926260	112926260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	229	427	1	ENST00000351677.2:c.1393C>T	p.Arg465Trp	p.R465W	ENST00000351677	NM_002834.3	465	Cgg/Tgg																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99434683	99434683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	223	405	0	ENST00000268035.6:c.770C>T	p.Ala257Val	p.A257V	ENST00000268035	NM_000875.3	257	gCc/gTc																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81888138	81888138	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	246	606	0	ENST00000359376.3:c.283T>C	p.Cys95Arg	p.C95R	ENST00000359376	NM_002661.3	95	Tgc/Cgc																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81969881	81969881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	272	561	0	ENST00000359376.3:c.2950C>T	p.Arg984Cys	p.R984C	ENST00000359376	NM_002661.3	984	Cgc/Tgc																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771831816		P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	92	359	0	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56439906	56439906	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	160	272	0	ENST00000407977.2:c.686C>T	p.Pro229Leu	p.P229L	ENST00000407977		229	cCg/cTg																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78854225	78854225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	168	428	2	ENST00000306801.3:c.1520C>T	p.Ala507Val	p.A507V	ENST00000306801	NM_020761.2	507	gCg/gTg																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78867533	78867533	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185118480		P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	148	457	0	ENST00000306801.3:c.2269G>A	p.Gly757Arg	p.G757R	ENST00000306801	NM_020761.2	757	Gga/Aga																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78919514	78919514	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149834841		P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	149	435	0	ENST00000306801.3:c.3073G>A	p.Val1025Ile	p.V1025I	ENST00000306801	NM_020761.2	1025	Gtc/Atc																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2210501	2210501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	137	373	2	ENST00000398665.3:c.1108G>A	p.Ala370Thr	p.A370T	ENST00000398665	NM_032482.2	370	Gcc/Acc																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11145624	11145624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	160	354	0	ENST00000344626.4:c.3986G>A	p.Arg1329His	p.R1329H	ENST00000344626	NM_003072.3	1329	cGc/cAc																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15298730	15298730	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	53	427	0	ENST00000263388.2:c.1568T>C	p.Val523Ala	p.V523A	ENST00000263388	NM_000435.2	523	gTg/gCg																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15365052	15365052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	135	409	1	ENST00000263377.2:c.2069C>T	p.Ala690Val	p.A690V	ENST00000263377	NM_058243.2	690	gCc/gTc																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41737136	41737136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	185	499	0	ENST00000301178.4:c.716C>T	p.Thr239Met	p.T239M	ENST00000301178	NM_021913.4	239	aCg/aTg																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42793416	42793416	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	119	319	0	ENST00000575354.2:c.1218G>T	p.Glu406Asp	p.E406D	ENST00000575354	NM_015125.3	406	gaG/gaT																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42797780	42797780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	98	398	1	ENST00000575354.2:c.3832G>A	p.Val1278Ile	p.V1278I	ENST00000575354	NM_015125.3	1278	Gtc/Atc																																													NEWRECORD																																		
AURKA	6790	MSKCC	GRCh37	20	54945355	54945355	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	162	277	0	ENST00000312783.6:c.1071G>T	p.Arg357Ser	p.R357S	ENST00000312783	NM_198436.1	357	agG/agT																																													NEWRECORD																																		
CHEK2	11200	MSKCC	GRCh37	22	29121241	29121241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	463	517	0	ENST00000328354.6:c.434G>A	p.Arg145Gln	p.R145Q	ENST00000328354	NM_007194.3	145	cGg/cAg																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41566519	41566519	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1168	250	549	0	ENST00000263253.7:c.4396T>C	p.Trp1466Arg	p.W1466R	ENST00000263253	NM_001429.3	1466	Tgg/Cgg																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70355041	70355041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	203	300	0	ENST00000374080.3:c.4963G>T	p.Gly1655Cys	p.G1655C	ENST00000374080		1655	Ggc/Tgc																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76937084	76937084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	432	283	0	ENST00000373344.5:c.3664G>A	p.Asp1222Asn	p.D1222N	ENST00000373344	NM_000489.3	1222	Gat/Aat																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139401385	139401385	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	124	269	2	ENST00000277541.6:c.3684del	p.Val1229LeufsTer216	p.V1229Lfs*216	ENST00000277541	NM_017617.3	1228	ccC/cc																																													NEWRECORD																																		
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1047	392	617	4	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																													NEWRECORD																																		
FGF19	9965	MSKCC	GRCh37	11	69518488	69518488	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	175	259	0	ENST00000294312.3:c.157del	p.His53ThrfsTer93	p.H53Tfs*93	ENST00000294312	NM_005117.2	53	Cac/ac																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49426729	49426730	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	27	150	0	ENST00000301067.7:c.11756_11758dup	p.Gln3919dup	p.Q3919dup	ENST00000301067	NM_003482.3	3919	cta/cAGCta																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	167	460	3	ENST00000318560.5:c.2352delC	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	26029193	26029195	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	226	343	0	ENST00000435504.4:c.155_157del	p.Pro52del	p.P52del	ENST00000435504		52	cCTCtt/ctt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27100331	27100331	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	185	496	0	ENST00000324856.7:c.4046del	p.Pro1349LeufsTer132	p.P1349Lfs*132	ENST00000324856	NM_006015.4	1348	aCc/ac																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47702391	47702399	+	inframe_deletion	In_Frame_Del	DEL	ATGTTCCAC	ATGTTCCAC	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	111	282	0	ENST00000233146.2:c.1989_1997del	p.Met663_His665del	p.M663_H665del	ENST00000233146	NM_000251.2	663	ATGTTCCAC/-																																													NEWRECORD																																		
CHEK2	11200	MSKCC	GRCh37	22	29091793	29091793	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	159	287	0	ENST00000328354.6:c.1164del	p.Thr389ProfsTer25	p.T389Pfs*25	ENST00000328354	NM_007194.3	388	ccC/cc																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139409036	139409036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	106	524	0	ENST00000277541.6:c.2133delC	p.Thr712ProfsTer60	p.T712Pfs*60	ENST00000277541	NM_017617.3	711	ccC/cc																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202149802	202149805	+	frameshift_variant	Frame_Shift_Del	DEL	TTTA	TTTA	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	169	339	0	ENST00000358485.4:c.1245_1248del	p.Ile416ArgfsTer24	p.I416Rfs*24	ENST00000358485	NM_001080125.1	415	TTTAtt/tt																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49445374	49445375	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	94	379	0	ENST00000301067.7:c.2091dup	p.Thr698HisfsTer6	p.T698Hfs*6	ENST00000301067	NM_003482.3	697	-/C																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101259	27101259	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	150	428	0	ENST00000324856.7:c.4541delC	p.Thr1514ArgfsTer13	p.T1514Rfs*13	ENST00000324856	NM_006015.4	1514	aCg/ag																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	219	399	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1328	175	589	0	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88420202	88420202	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	194	429	0	ENST00000360948.2:c.2484del	p.Lys829ArgfsTer18	p.K829Rfs*18	ENST00000360948	NM_001012338.2	828	ggG/gg																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3781901	3781903	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-	rs751071525		P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	128	459	0	ENST00000262367.5:c.4764_4766del	p.Lys1588del	p.K1588del	ENST00000262367	NM_004380.2	1588	aaGAAc/aac																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46123837	46123837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	222	256	0	ENST00000334344.6:c.109delA	p.Ile37SerfsTer21	p.I37Sfs*21	ENST00000334344	NM_152641.2	35	Aaa/aa																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76937419	76937421	+	inframe_deletion	In_Frame_Del	DEL	GAT	GAT	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	342	232	0	ENST00000373344.5:c.3327_3329del	p.Ser1110del	p.S1110del	ENST00000373344	NM_000489.3	1109	tcATCt/tct																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16265908	16265908	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	127	461	0	ENST00000375759.3:c.10981A>T	p.Ile3661Phe	p.I3661F	ENST00000375759	NM_015001.2	3661	Att/Ttt																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	109	256	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68857311	68857312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	66	245	0	ENST00000261769.5:c.1947dup	p.Ile650TyrfsTer13	p.I650Yfs*13	ENST00000261769	NM_004360.3	649	tct/tcTt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	72	202	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0007069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	413	467	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89685288	89685289	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	166	194	0	ENST00000371953.3:c.188dupA	p.Asn63LysfsTer11	p.N63Kfs*11	ENST00000371953	NM_000314.4	61	-/A																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0007069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	162	206	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0007069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	176	352	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123200033	123200033	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	115	261	0	ENST00000218089.9:c.2105A>G	p.Asp702Gly	p.D702G	ENST00000218089	NM_001042749.1	702	gAc/gGc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175880	112175880	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	247	372	0	ENST00000257430.4:c.4592delA	p.Asn1531MetfsTer34	p.N1531Mfs*34	ENST00000257430	NM_000038.5	1530	gAa/ga																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0013143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	194	487	0	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242448	55242449	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTCCCGTCGCTATCAAGG			P-0013143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1232	383	563	0	ENST00000275493.2:c.2219_2236dup	p.Lys745_Glu746insValProValAlaIleLys	p.K745_E746insVPVAIK	ENST00000275493	NM_005228.3	740	att/aTTCCCGTCGCTATCAAGGtt																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55955100	55955100	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	334	666	0	ENST00000263923.4:c.3445C>T	p.Gln1149Ter	p.Q1149*	ENST00000263923	NM_002253.2	1149	Cag/Tag																																													NEWRECORD																																		
MST1	4485	MSKCC	GRCh37	3	49722905	49722906	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GG			P-0005452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	23	135	2	ENST00000449682.2:c.1420_1421dup	p.Asp475GlnfsTer52	p.D475Qfs*52	ENST00000449682	NM_020998.3	474	cca/ccCCa																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151877175	151877175	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	53	355	0	ENST00000262189.6:c.7186C>T	p.Gln2396Ter	p.Q2396*	ENST00000262189	NM_170606.2	2396	Cag/Tag																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133219578	133219578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	46	389	0	ENST00000320574.5:c.4556G>T	p.Arg1519Leu	p.R1519L	ENST00000320574	NM_006231.2	1519	cGc/cTc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115722	8115724	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0005452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	220	585	1	ENST00000346208.3:c.1072_1074del	p.Lys358del	p.K358del	ENST00000346208		356	atGAAg/atg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0012415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	379	454	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0012415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	879	582	2	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0012415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	192	185	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0012415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	299	378	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
HOXB13	10481	MSKCC	GRCh37	17	46805834	46805834	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199799743		P-0012415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1471	556	723	1	ENST00000290295.7:c.122C>T	p.Thr41Met	p.T41M	ENST00000290295	NM_006361.5	41	aCg/aTg																																													NEWRECORD																																		
TRAF2	7186	MSKCC	GRCh37	9	139793211	139793212	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	392	670	2	ENST00000247668.2:c.26dup	p.Gly10TrpfsTer70	p.G10Wfs*70	ENST00000247668	NM_021138.3	7	acc/aCcc																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119759	70119778	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAGGGGCGCCCCTTGCCA	GAGAGGGGCGCCCCTTGCCA	-			P-0012415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	726	536	1	ENST00000245479.2:c.764_783del	p.Glu255GlyfsTer34	p.E255Gfs*34	ENST00000245479	NM_000346.3	254	cGAGAGGGGCGCCCCTTGCCA/c																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89692839	89692839	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	90	115	0	ENST00000371953.3:c.323T>A	p.Leu108His	p.L108H	ENST00000371953	NM_000314.4	108	cTt/cAt																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16049691	16049691	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0012415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	470	589	1	ENST00000268712.3:c.1081C>T	p.Arg361Ter	p.R361*	ENST00000268712	NM_006311.3	361	Cga/Tga																																													NEWRECORD																																		
TMPRSS2	7113	MSKCC	GRCh37	21	42845360	42845360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	199	392	1	ENST00000398585.3:c.902C>T	p.Pro301Leu	p.P301L	ENST00000398585	NM_001135099.1	301	cCg/cTg																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48575183	48575184	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0012415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	289	362	0	ENST00000342988.3:c.378_379del	p.Val128GlufsTer14	p.V128Efs*14	ENST00000342988	NM_005359.5	126	gTC/g																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	115	449	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56167801	56167802	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	126	453	0	ENST00000399503.3:c.1368dupT	p.Thr457TyrfsTer4	p.T457Yfs*4	ENST00000399503	NM_005921.1	456	ctt/cTtt																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67650719	67650719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	310	688	2	ENST00000264010.4:c.1024C>T	p.Arg342Cys	p.R342C	ENST00000264010	NM_006565.3	342	Cgt/Tgt																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36206757	36206803	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGCACGAGGGTTGGGCGTGGGGGCTGGGTGGTGTGGGCTGACCCT	GAGGCACGAGGGTTGGGCGTGGGGGCTGGGTGGTGTGGGCTGACCCT	-			P-0013613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	207	363	0	ENST00000300305.3:c.709_755del	p.Arg237ProfsTer8	p.R237Pfs*8	ENST00000300305		237	AGGGTCAGCCCACACCACCCAGCCCCCACGCCCAACCCTCGTGCCTCc/c																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56161654	56161654	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0013613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	101	399	0	ENST00000399503.3:c.1153-2A>C		p.X385_splice	ENST00000399503	NM_005921.1	385																																														NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0008357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	92	610	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76890149	76890150	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	74	490	0	ENST00000373344.5:c.4744dup	p.Thr1582AsnfsTer19	p.T1582Nfs*19	ENST00000373344	NM_000489.3	1582	aca/aAca																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175148	112175148	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	36	249	0	ENST00000257430.4:c.3859delA	p.Ile1287Ter	p.I1287*	ENST00000257430	NM_000038.5	1286	gAa/ga																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	152	234	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	162	286	0	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																													NEWRECORD																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52719104	52719104	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	18	262	0	ENST00000322088.6:c.880T>C	p.Cys294Arg	p.C294R	ENST00000322088	NM_014225.5	294	Tgt/Cgt																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25972564	25972564	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0004462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	113	197	0	ENST00000435504.4:c.1860+1del		p.X620_splice	ENST00000435504		620																																														NEWRECORD																																		
GPS2	2874	MSKCC	GRCh37	17	7218291	7218292	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	137	280	0	ENST00000380728.2:c.80dup	p.Arg28AlafsTer11	p.R28Afs*11	ENST00000380728		27	gag/gaAg																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	209	626	3	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	206	585	0	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	219	638	3	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	294	754	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1294665	1294665	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	64	140	2	ENST00000310581.5:c.336del	p.Glu113ArgfsTer15	p.E113Rfs*15	ENST00000310581	NM_198253.2	112	ccC/cc																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	172	608	2	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																													NEWRECORD																																		
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	402	600	5	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3781324	3781326	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	255	676	2	ENST00000262367.5:c.5039_5041delCCT	p.Ser1680del	p.S1680del	ENST00000262367	NM_004380.2	1680	tCCTtg/ttg																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	195	559	4	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	186	544	0	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10610666	10610666	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144429440		P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	128	248	0	ENST00000171111.5:c.44G>A	p.Arg15Gln	p.R15Q	ENST00000171111	NM_203500.1	15	cGa/cAa																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	96	268	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																													NEWRECORD																																		
RFWD2	64326	MSKCC	GRCh37	1	175958549	175958549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	122	694	0	ENST00000367669.3:c.1796G>A	p.Arg599His	p.R599H	ENST00000367669	NM_022457.5	599	cGt/cAt																																													NEWRECORD																																		
EIF1AX	1964	MSKCC	GRCh37	X	20156731	20156731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	163	313	0	ENST00000379607.5:c.26G>A	p.Gly9Asp	p.G9D	ENST00000379607	NM_001412.3	9	gGt/gAt																																													NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189586502	189586502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	93	294	0	ENST00000264731.3:c.1126C>T	p.Arg376Cys	p.R376C	ENST00000264731	NM_003722.4	376	Cgc/Tgc																																													NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58677945	58677945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	221	491	2	ENST00000305921.3:c.170C>T	p.Ala57Val	p.A57V	ENST00000305921	NM_003620.3	57	gCc/gTc																																													NEWRECORD																																		
CD274	29126	MSKCC	GRCh37	9	5465595	5465595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148141792		P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	164	650	2	ENST00000381577.3:c.779G>A	p.Arg260His	p.R260H	ENST00000381577	NM_014143.3	260	cGt/cAt																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43601873	43601873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	85	599	0	ENST00000355710.3:c.917C>T	p.Ala306Val	p.A306V	ENST00000355710	NM_020975.4	306	gCa/gTa																																													NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58678053	58678053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	217	482	0	ENST00000305921.3:c.278G>A	p.Arg93His	p.R93H	ENST00000305921	NM_003620.3	93	cGc/cAc																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	436	559	0	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50919786	50919786	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	181	547	0	ENST00000440232.2:c.2953+1G>A		p.X985_splice	ENST00000440232	NM_002691.3	985																																														NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37866710	37866710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	421	580	0	ENST00000269571.5:c.877G>A	p.Ala293Thr	p.A293T	ENST00000269571		293	Gcc/Acc																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16261538	16261538	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	176	456	0	ENST00000375759.3:c.8803G>T	p.Gly2935Trp	p.G2935W	ENST00000375759	NM_015001.2	2935	Ggg/Tgg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27100837	27100837	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	189	690	1	ENST00000324856.7:c.4119G>T	p.Met1373Ile	p.M1373I	ENST00000324856	NM_006015.4	1373	atG/atT																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156846307	156846307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	237	712	2	ENST00000524377.1:c.1748G>A	p.Arg583His	p.R583H	ENST00000524377	NM_002529.3	583	cGc/cAc																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202149938	202149938	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	191	582	0	ENST00000358485.4:c.1379T>C	p.Leu460Pro	p.L460P	ENST00000358485	NM_001080125.1	460	cTg/cCg																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227662191	227662191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	163	712	0	ENST00000305123.5:c.1264G>A	p.Asp422Asn	p.D422N	ENST00000305123	NM_005544.2	422	Gat/Aat																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47103785	47103785	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139016283		P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	215	916	0	ENST00000409792.3:c.6161C>T	p.Pro2054Leu	p.P2054L	ENST00000409792	NM_014159.6	2054	cCg/cTg																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49933294	49933294	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	275	789	1	ENST00000296474.3:c.2816G>T	p.Cys939Phe	p.C939F	ENST00000296474	NM_002447.2	939	tGt/tTt																																													NEWRECORD																																		
BCL6	604	MSKCC	GRCh37	3	187446845	187446845	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201771435		P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	154	477	0	ENST00000232014.4:c.1348G>A	p.Val450Ile	p.V450I	ENST00000232014	NM_001130845.1	450	Gtt/Att																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106158113	106158113	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	136	510	0	ENST00000380013.4:c.3014A>C	p.Lys1005Thr	p.K1005T	ENST00000380013	NM_001127208.2	1005	aAg/aCg																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149512341	149512341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	164	436	0	ENST00000261799.4:c.1099C>A	p.Leu367Met	p.L367M	ENST00000261799	NM_002609.3	367	Ctg/Atg																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180051034	180051034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	183	620	0	ENST00000261937.6:c.1449G>A	p.Met483Ile	p.M483I	ENST00000261937	NM_182925.4	483	atG/atA																																													NEWRECORD																																		
IRF4	3662	MSKCC	GRCh37	6	393351	393351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	177	480	0	ENST00000380956.4:c.199G>A	p.Asp67Asn	p.D67N	ENST00000380956	NM_001195286.1	67	Gac/Aac																																													NEWRECORD																																		
IRF4	3662	MSKCC	GRCh37	6	407516	407516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	135	595	0	ENST00000380956.4:c.1274T>C	p.Leu425Pro	p.L425P	ENST00000380956	NM_001195286.1	425	cTg/cCg																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157100417	157100417	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	29	81	0	ENST00000346085.5:c.1354C>T	p.Gln452Ter	p.Q452*	ENST00000346085	NM_020732.3	452	Cag/Tag																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151848622	151848622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	124	512	1	ENST00000262189.6:c.12571G>A	p.Ala4191Thr	p.A4191T	ENST00000262189	NM_170606.2	4191	Gca/Aca																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145738440	145738440	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201661055		P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	165	441	0	ENST00000428558.2:c.2545G>A	p.Val849Met	p.V849M	ENST00000428558	NM_004260.3	849	Gtg/Atg																																													NEWRECORD																																		
NTRK2	4915	MSKCC	GRCh37	9	87338562	87338562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	130	737	0	ENST00000277120.3:c.658G>A	p.Val220Met	p.V220M	ENST00000277120		220	Gtg/Atg																																													NEWRECORD																																		
SYK	6850	MSKCC	GRCh37	9	93607729	93607729	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	122	446	0	ENST00000375746.1:c.431A>G	p.Glu144Gly	p.E144G	ENST00000375746	NM_001174167.1	144	gAg/gGg																																													NEWRECORD																																		
BIRC3	330	MSKCC	GRCh37	11	102196076	102196076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	160	734	0	ENST00000263464.3:c.836C>T	p.Ala279Val	p.A279V	ENST00000263464	NM_001165.4	279	gCg/gTg																																													NEWRECORD																																		
CHEK1	1111	MSKCC	GRCh37	11	125497611	125497611	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	76	359	0	ENST00000428830.2:c.175A>G	p.Asn59Asp	p.N59D	ENST00000428830	NM_001114121.2	59	Aat/Gat																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	432914	432914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	143	492	1	ENST00000399788.2:c.2002C>T	p.Leu668Phe	p.L668F	ENST00000399788	NM_001042603.1	668	Ctt/Ttt																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115110049	115110049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	163	475	1	ENST00000257566.3:c.1829C>T	p.Ala610Val	p.A610V	ENST00000257566	NM_016569.3	610	gCa/gTa																																													NEWRECORD																																		
LATS2	26524	MSKCC	GRCh37	13	21557675	21557675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	227	709	0	ENST00000382592.4:c.2170G>A	p.Asp724Asn	p.D724N	ENST00000382592	NM_014572.2	724	Gac/Aac																																													NEWRECORD																																		
LATS2	26524	MSKCC	GRCh37	13	21563059	21563059	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	193	511	0	ENST00000382592.4:c.860C>A	p.Ala287Asp	p.A287D	ENST00000382592	NM_014572.2	287	gCc/gAc																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28903782	28903782	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	236	704	0	ENST00000282397.4:c.2677A>T	p.Asn893Tyr	p.N893Y	ENST00000282397	NM_002019.4	893	Aac/Tac																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42042336	42042336	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	263	1189	0	ENST00000219905.7:c.6531T>A	p.His2177Gln	p.H2177Q	ENST00000219905	NM_001164273.1	2177	caT/caA																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42042344	42042344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	266	1186	0	ENST00000219905.7:c.6539G>A	p.Gly2180Asp	p.G2180D	ENST00000219905	NM_001164273.1	2180	gGc/gAc																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42042350	42042350	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	261	1203	0	ENST00000219905.7:c.6545T>A	p.Leu2182Ter	p.L2182*	ENST00000219905	NM_001164273.1	2182	tTa/tAa																																													NEWRECORD																																		
TRAF7	84231	MSKCC	GRCh37	16	2218083	2218083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	295	900	0	ENST00000326181.6:c.145G>A	p.Gly49Arg	p.G49R	ENST00000326181	NM_032271.2	49	Ggg/Agg																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68856028	68856028	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	252	822	0	ENST00000261769.5:c.1836A>G	p.Ile612Met	p.I612M	ENST00000261769	NM_004360.3	612	atA/atG																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72828860	72828860	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1089	271	973	0	ENST00000268489.5:c.7721T>C	p.Phe2574Ser	p.F2574S	ENST00000268489	NM_006885.3	2574	tTc/tCc																																													NEWRECORD																																		
GPS2	2874	MSKCC	GRCh37	17	7217689	7217689	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	175	866	0	ENST00000380728.2:c.238C>T	p.Gln80Ter	p.Q80*	ENST00000380728		80	Cag/Tag																																													NEWRECORD																																		
AURKB	9212	MSKCC	GRCh37	17	8108241	8108241	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773142037		P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	243	691	0	ENST00000585124.1:c.983G>A	p.Arg328Gln	p.R328Q	ENST00000585124	NM_004217.3	328	cGg/cAg																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17125941	17125941	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367843558		P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	166	480	0	ENST00000285071.4:c.653G>A	p.Arg218His	p.R218H	ENST00000285071	NM_144997.5	218	cGt/cAt																																													NEWRECORD																																		
RARA	5914	MSKCC	GRCh37	17	38511574	38511574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	206	678	0	ENST00000254066.5:c.1072G>A	p.Ala358Thr	p.A358T	ENST00000254066	NM_000964.3	358	Gcg/Acg																																													NEWRECORD																																		
PIK3R2	5296	MSKCC	GRCh37	19	18273775	18273775	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	174	526	0	ENST00000222254.8:c.1110-2A>G		p.X370_splice	ENST00000222254	NM_005027.3	370																																														NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41101086	41101086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	153	596	0	ENST00000373198.4:c.1270G>A	p.Val424Met	p.V424M	ENST00000373198	NM_133170.3	424	Gtg/Atg																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41537115	41537115	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	157	576	0	ENST00000263253.7:c.1942C>T	p.Arg648Ter	p.R648*	ENST00000263253	NM_001429.3	648	Cga/Tga																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53227706	53227706	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	259	366	1	ENST00000375401.3:c.2482C>T	p.Arg828Ter	p.R828*	ENST00000375401	NM_004187.3	828	Cga/Tga																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49428704	49428705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	175	570	0	ENST00000301067.7:c.10245dup	p.Ala3416CysfsTer7	p.A3416Cfs*7	ENST00000301067	NM_003482.3	3415	-/T																																													NEWRECORD																																		
SUFU	51684	MSKCC	GRCh37	10	104263974	104263974	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	111	306	0	ENST00000369902.3:c.71delC	p.Pro24ArgfsTer72	p.P24Rfs*72	ENST00000369902	NM_016169.3	22	gCc/gc																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16259480	16259480	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	117	356	2	ENST00000375759.3:c.6750del	p.Ala2251GlnfsTer102	p.A2251Qfs*102	ENST00000375759	NM_015001.2	2249	Ccc/cc																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49435157	49435157	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	151	266	0	ENST00000301067.7:c.6396del	p.Ala2133ProfsTer11	p.A2133Pfs*11	ENST00000301067	NM_003482.3	2132	ccC/cc																																													NEWRECORD																																		
JUN	3725	MSKCC	GRCh37	1	59248471	59248473	+	inframe_deletion	In_Frame_Del	DEL	GTG	GTG	-			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	193	596	0	ENST00000371222.2:c.270_272del	p.Thr91del	p.T91del	ENST00000371222	NM_002228.3	90	acCACg/acg																																													NEWRECORD																																		
AURKB	9212	MSKCC	GRCh37	17	8113516	8113516	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	243	748	0	ENST00000585124.1:c.27del	p.Trp10GlyfsTer12	p.W10Gfs*12	ENST00000585124	NM_004217.3	9	ccC/cc																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110434713	110434716	+	missense_variant	Missense_Mutation	ONP	CGAC	CGAC	TGAT			P-0010581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	133	506	0	ENST00000375856.3:c.3685_3688delinsATCA	p.Val1229_Gly1230delinsIleSer	p.V1229_G1230delinsIS	ENST00000375856	NM_003749.2	1229	GTCGgt/ATCAgt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009270-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	120	322	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577562	7577563	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGT			P-0009270-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	134	240	0	ENST00000269305.4:c.716_718dup	p.Asn239dup	p.N239dup	ENST00000269305	NM_001126112.2	239	agt/aACAgt																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38949907	38949907	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009270-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	83	331	0	ENST00000357387.3:c.4043C>G	p.Ser1348Cys	p.S1348C	ENST00000357387	NM_152756.3	1348	tCt/tGt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000274-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			127	105	226	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
ERCC4	2072	MSKCC	GRCh37	16	14024721	14024721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000274-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	16	312	0	ENST00000311895.7:c.947C>T	p.Thr316Met	p.T316M	ENST00000311895	NM_005236.2	316	aCg/aTg																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152419870	152419871	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000274-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			107	23	138	0	ENST00000206249.3:c.1560dupA	p.Gly521ArgfsTer18	p.G521Rfs*18	ENST00000206249	NM_000125.3	519	-/A																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578284	7578288	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CCAGA	CCAGA	-			P-0000274-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			61	15	381	0	ENST00000269305.4:c.561_565delTCTGG	p.Leu188ProfsTer19	p.L188Pfs*19	ENST00000269305	NM_001126112.2	187	ggTCTGGcc/ggcc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	149	526	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7573978	7573979	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GTTCCAAGGCCTCATTCAGC			P-0004624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	124	601	0	ENST00000269305.4:c.1029_1048dup	p.Leu350ArgfsTer2	p.L350Rfs*2	ENST00000269305	NM_001126112.2	350	ctc/cGCTGAATGAGGCCTTGGAACtc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0001302-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			728	192	400	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86685344	86685344	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0001302-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			342	77	144	0	ENST00000274376.6:c.3060G>C	p.Gln1020His	p.Q1020H	ENST00000274376	NM_002890.2	1020	caG/caC																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174901	112174901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001302-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			413	303	284	0	ENST00000257430.4:c.3610C>T	p.Gln1204Ter	p.Q1204*	ENST00000257430	NM_000038.5	1204	Caa/Taa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579382	7579383	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001302-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	257	287	0	ENST00000269305.4:c.304dup	p.Thr102AsnfsTer47	p.T102Nfs*47	ENST00000269305	NM_001126112.2	102	acc/aAcc																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30670943	30670943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	139	359	0	ENST00000376406.3:c.5803G>A	p.Val1935Ile	p.V1935I	ENST00000376406	NM_014641.2	1935	Gtc/Atc																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63851131	63851131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	58	224	0	ENST00000279873.7:c.1909G>A	p.Asp637Asn	p.D637N	ENST00000279873	NM_032199.2	637	Gac/Aac																																													NEWRECORD																																		
RARA	5914	MSKCC	GRCh37	17	38508183	38508183	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	72	391	0	ENST00000254066.5:c.491A>C	p.Lys164Thr	p.K164T	ENST00000254066	NM_000964.3	164	aAg/aCg																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76814213	76814213	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	138	620	0	ENST00000373344.5:c.6431A>G	p.Asp2144Gly	p.D2144G	ENST00000373344	NM_000489.3	2144	gAc/gGc																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64577281	64577282	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	221	294	0	ENST00000337652.1:c.300dup	p.Val101ArgfsTer16	p.V101Rfs*16	ENST00000337652	NM_130803.2	100	-/C																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	99	347	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	45	390	2	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	84	325	0	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	65	386	0	ENST00000257430.4:c.4393_4394dupAG	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	71	206	1	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913288		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	47	333	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	26	381	0	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156838363	156838363	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200132482		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	45	288	0	ENST00000524377.1:c.641G>A	p.Arg214Gln	p.R214Q	ENST00000524377	NM_002529.3	214	cGg/cAg																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	29	516	3	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	31	223	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42796744	42796744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	58	294	0	ENST00000575354.2:c.3202G>A	p.Gly1068Ser	p.G1068S	ENST00000575354	NM_015125.3	1068	Ggt/Agt																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145741760	145741760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	95	373	1	ENST00000428558.2:c.743G>A	p.Arg248His	p.R248H	ENST00000428558	NM_004260.3	248	cGt/cAt																																													NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50468158	50468158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	39	270	0	ENST00000331340.3:c.1393G>A	p.Glu465Lys	p.E465K	ENST00000331340	NM_006060.4	465	Gaa/Aaa																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135785964	135785964	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs118203506		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	14	183	0	ENST00000298552.3:c.1257del	p.Arg420GlyfsTer20	p.R420Gfs*20	ENST00000298552	NM_001162426.1	419	ccC/cc																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	59	562	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																													NEWRECORD																																		
SDHAF2	54949	MSKCC	GRCh37	11	61197631	61197631	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs775763888		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	49	438	0	ENST00000301761.2:c.13A>G	p.Thr5Ala	p.T5A	ENST00000301761	NM_017841.2	5	Aca/Gca																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11264661	11264661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	26	380	0	ENST00000361445.4:c.3901C>T	p.Arg1301Cys	p.R1301C	ENST00000361445	NM_004958.3	1301	Cgc/Tgc																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11273503	11273503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	15	346	0	ENST00000361445.4:c.3238C>T	p.Arg1080Cys	p.R1080C	ENST00000361445	NM_004958.3	1080	Cgt/Tgt																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11319406	11319406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149221273		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	59	374	0	ENST00000361445.4:c.61G>A	p.Val21Ile	p.V21I	ENST00000361445	NM_004958.3	21	Gtc/Atc																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16255472	16255472	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	28	287	0	ENST00000375759.3:c.2737C>A	p.Leu913Met	p.L913M	ENST00000375759	NM_015001.2	913	Ctg/Atg																																													NEWRECORD																																		
SDHB	6390	MSKCC	GRCh37	1	17371344	17371344	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202119350		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	39	348	1	ENST00000375499.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000375499	NM_003000.2	38	Cgt/Tgt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27059227	27059227	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	54	405	0	ENST00000324856.7:c.1864A>G	p.Lys622Glu	p.K622E	ENST00000324856	NM_006015.4	622	Aag/Gag																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156841541	156841541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	43	242	2	ENST00000524377.1:c.844G>A	p.Val282Ile	p.V282I	ENST00000524377	NM_002529.3	282	Gtc/Atc																																													NEWRECORD																																		
ERCC3	2071	MSKCC	GRCh37	2	128015258	128015258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115312738		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	35	338	0	ENST00000285398.2:c.2263G>A	p.Asp755Asn	p.D755N	ENST00000285398	NM_000122.1	755	Gac/Aac																																													NEWRECORD																																		
ACVR1	90	MSKCC	GRCh37	2	158626970	158626970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	78	567	1	ENST00000263640.3:c.700G>A	p.Val234Met	p.V234M	ENST00000263640	NM_001105.4	234	Gtg/Atg																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227662401	227662401	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	28	168	0	ENST00000305123.5:c.1054A>G	p.Asn352Asp	p.N352D	ENST00000305123	NM_005544.2	352	Aac/Gac																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30713802	30713802	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	108	238	0	ENST00000359013.4:c.1202T>C	p.Val401Ala	p.V401A	ENST00000359013	NM_001024847.2	401	gTg/gCg																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30715613	30715613	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	113	212	0	ENST00000359013.4:c.1346A>G	p.Tyr449Cys	p.Y449C	ENST00000359013	NM_001024847.2	449	tAc/tGc																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49924781	49924781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	82	556	1	ENST00000296474.3:c.4162C>T	p.Arg1388Cys	p.R1388C	ENST00000296474	NM_002447.2	1388	Cgc/Tgc																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49933744	49933744	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	69	524	0	ENST00000296474.3:c.2533C>T	p.Arg845Ter	p.R845*	ENST00000296474	NM_002447.2	845	Cga/Tga																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142178078	142178078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	17	222	0	ENST00000350721.4:c.7340C>A	p.Pro2447His	p.P2447H	ENST00000350721	NM_001184.3	2447	cCt/cAt																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67588981	67588981	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	56	229	0	ENST00000274335.5:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000274335		358	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112177968	112177968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	71	371	0	ENST00000257430.4:c.6677G>A	p.Arg2226Gln	p.R2226Q	ENST00000257430	NM_000038.5	2226	cGa/cAa																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180047905	180047905	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	18	293	0	ENST00000261937.6:c.2270T>C	p.Val757Ala	p.V757A	ENST00000261937	NM_182925.4	757	gTc/gCc																																													NEWRECORD																																		
HIST1H3E	8353	MSKCC	GRCh37	6	26225530	26225530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	118	876	0	ENST00000360408.1:c.148C>T	p.Arg50Cys	p.R50C	ENST00000360408	NM_003532.2	50	Cgc/Tgc																																													NEWRECORD																																		
PRDM1	639	MSKCC	GRCh37	6	106536224	106536224	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	81	262	0	ENST00000369096.4:c.191A>G	p.Asp64Gly	p.D64G	ENST00000369096	NM_001198.3	64	gAc/gGc																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98220390	98220390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	52	266	0	ENST00000331920.6:c.3073C>T	p.Arg1025Cys	p.R1025C	ENST00000331920	NM_000264.3	1025	Cgc/Tgc																																													NEWRECORD																																		
LMO1	4004	MSKCC	GRCh37	11	8251976	8251976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	29	360	0	ENST00000335790.3:c.101G>A	p.Arg34His	p.R34H	ENST00000335790	NM_002315.2	34	cGc/cAc																																													NEWRECORD																																		
FGF4	2249	MSKCC	GRCh37	11	69588192	69588192	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	16	525	0	ENST00000168712.1:c.506A>G	p.Tyr169Cys	p.Y169C	ENST00000168712	NM_002007.2	169	tAc/tGc																																													NEWRECORD																																		
PGR	5241	MSKCC	GRCh37	11	100920750	100920750	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	28	542	0	ENST00000325455.5:c.2398A>G	p.Thr800Ala	p.T800A	ENST00000325455	NM_001202474.3	800	Acc/Gcc																																													NEWRECORD																																		
PGR	5241	MSKCC	GRCh37	11	100920785	100920785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	51	463	0	ENST00000325455.5:c.2363G>A	p.Arg788Gln	p.R788Q	ENST00000325455	NM_001202474.3	788	cGg/cAg																																													NEWRECORD																																		
CCND2	894	MSKCC	GRCh37	12	4385261	4385261	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	55	364	0	ENST00000261254.3:c.286T>A	p.Ser96Thr	p.S96T	ENST00000261254	NM_001759.3	96	Tcc/Acc																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3828032	3828032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	42	329	0	ENST00000262367.5:c.2093C>T	p.Ala698Val	p.A698V	ENST00000262367	NM_004380.2	698	gCa/gTa																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3831284	3831284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	74	235	0	ENST00000262367.5:c.1597G>A	p.Ala533Thr	p.A533T	ENST00000262367	NM_004380.2	533	Gca/Aca																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81934239	81934239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	47	384	0	ENST00000359376.3:c.1216G>A	p.Glu406Lys	p.E406K	ENST00000359376	NM_002661.3	406	Gag/Aag																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81941311	81941311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	22	365	0	ENST00000359376.3:c.1489G>A	p.Ala497Thr	p.A497T	ENST00000359376	NM_002661.3	497	Gcc/Acc																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37646849	37646849	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	40	434	0	ENST00000447079.4:c.1971G>C	p.Glu657Asp	p.E657D	ENST00000447079	NM_015083.1	657	gaG/gaC																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37682393	37682393	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61741615		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	66	350	2	ENST00000447079.4:c.3584C>T	p.Thr1195Met	p.T1195M	ENST00000447079	NM_015083.1	1195	aCg/aTg																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63537616	63537616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	55	457	2	ENST00000307078.5:c.1016G>A	p.Arg339His	p.R339H	ENST00000307078	NM_004655.3	339	cGc/cAc																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2210735	2210735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	36	394	0	ENST00000398665.3:c.1232G>A	p.Arg411His	p.R411H	ENST00000398665	NM_032482.2	411	cGc/cAc																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2222475	2222475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200919682		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	10	162	0	ENST00000398665.3:c.3307G>A	p.Val1103Met	p.V1103M	ENST00000398665	NM_032482.2	1103	Gtg/Atg																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5243960	5243960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	16	278	0	ENST00000357368.4:c.1522G>A	p.Gly508Ser	p.G508S	ENST00000357368	NM_002850.3	508	Ggc/Agc																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7126648	7126648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	46	258	0	ENST00000302850.5:c.2960C>T	p.Pro987Leu	p.P987L	ENST00000302850	NM_000208.2	987	cCg/cTg																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7142851	7142851	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139912396		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	15	226	0	ENST00000302850.5:c.2518G>A	p.Val840Ile	p.V840I	ENST00000302850	NM_000208.2	840	Gtc/Atc																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11141534	11141534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	21	424	0	ENST00000344626.4:c.3511G>A	p.Val1171Met	p.V1171M	ENST00000344626	NM_003072.3	1171	Gtg/Atg																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11144017	11144017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	41	356	2	ENST00000344626.4:c.3598C>T	p.Arg1200Cys	p.R1200C	ENST00000344626	NM_003072.3	1200	Cgt/Tgt																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50905873	50905873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	34	472	2	ENST00000440232.2:c.845C>T	p.Thr282Met	p.T282M	ENST00000440232	NM_002691.3	282	aCg/aTg																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50912125	50912125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	59	566	1	ENST00000440232.2:c.1859C>T	p.Thr620Met	p.T620M	ENST00000440232	NM_002691.3	620	aCg/aTg																																													NEWRECORD																																		
ARAF	369	MSKCC	GRCh37	X	47428277	47428277	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	13	197	0	ENST00000377045.4:c.1237A>C	p.Thr413Pro	p.T413P	ENST00000377045	NM_001654.4	413	Act/Cct																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	65	402	2	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	101	469	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151859859	151859859	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	10	244	0	ENST00000262189.6:c.10803del	p.Lys3604ArgfsTer26	p.K3604Rfs*26	ENST00000262189	NM_170606.2	3601	aaA/aa																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152129338	152129338	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	14	344	2	ENST00000206249.3:c.296del	p.Pro99HisfsTer10	p.P99Hfs*10	ENST00000206249	NM_000125.3	97	ttC/tt																																													NEWRECORD																																		
MEF2B	100271849	MSKCC	GRCh37	19	19261529	19261529	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	52	431	0	ENST00000162023.5:c.16del	p.Ile6SerfsTer14	p.I6Sfs*14	ENST00000162023		6	Atc/tc																																													NEWRECORD																																		
MITF	4286	MSKCC	GRCh37	3	69987193	69987193	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	17	236	0	ENST00000352241.4:c.579del	p.Glu194ArgfsTer19	p.E194Rfs*19	ENST00000352241	NM_198159.2	192	gAa/ga																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180030307	180030308	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	14	464	0	ENST00000261937.6:c.3976dup	p.Ala1326GlyfsTer118	p.A1326Gfs*118	ENST00000261937	NM_182925.4	1326	gcc/gGcc																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	46	253	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																													NEWRECORD																																		
PMS1	5378	MSKCC	GRCh37	2	190660534	190660534	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	93	186	0	ENST00000441310.2:c.175del	p.Glu59ArgfsTer10	p.E59Rfs*10	ENST00000441310	NM_000534.4	58	Ggg/gg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139401034	139401034	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	28	355	0	ENST00000277541.6:c.3959del	p.Gly1320AlafsTer125	p.G1320Afs*125	ENST00000277541	NM_017617.3	1320	gGc/gc																																													NEWRECORD																																		
MEF2B	100271849	MSKCC	GRCh37	19	19257365	19257366	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	21	240	0	ENST00000162023.5:c.767dup	p.Glu257ArgfsTer28	p.E257Rfs*28	ENST00000162023		256	cca/ccCa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	227	422	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398286	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0012272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	320	442	1	ENST00000256078.4:c.33_34delinsCT	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	11	gcTGgt/gcCTgt																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212566738	212566738	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			44	189	531	0	ENST00000342788.4:c.1443C>G	p.Ile481Met	p.I481M	ENST00000342788	NM_005235.2	481	atC/atG																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49446794	49446794	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	227	477	0	ENST00000301067.7:c.1016G>A	p.Trp339Ter	p.W339*	ENST00000301067	NM_003482.3	339	tGg/tAg																																													NEWRECORD																																		
MAP2K2	5605	MSKCC	GRCh37	19	4110574	4110574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	228	474	1	ENST00000262948.5:c.383C>T	p.Pro128Leu	p.P128L	ENST00000262948	NM_030662.3	128	cCg/cTg																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36231848	36231848	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	179	371	0	ENST00000300305.3:c.536T>A	p.Val179Asp	p.V179D	ENST00000300305		179	gTc/gAc																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30729890	30729891	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	124	198	0	ENST00000359013.4:c.1487dup	p.Pro497AlafsTer44	p.P497Afs*44	ENST00000359013	NM_001024847.2	496	gag/gAag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0005931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	158	336	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																													NEWRECORD																																		
NEGR1	257194	MSKCC	GRCh37	1	72076823	72076823	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	46	344	1	ENST00000357731.5:c.674C>A	p.Pro225His	p.P225H	ENST00000357731	NM_173808.2	225	cCt/cAt																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153247244	153247244	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	157	447	0	ENST00000281708.4:c.1558G>T	p.Asp520Tyr	p.D520Y	ENST00000281708	NM_033632.3	520	Gat/Tat																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128845185	128845185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	239	401	1	ENST00000249373.3:c.679C>T	p.His227Tyr	p.H227Y	ENST00000249373	NM_005631.4	227	Cac/Tac																																													NEWRECORD																																		
FANCC	2176	MSKCC	GRCh37	9	97888819	97888819	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	92	518	0	ENST00000289081.3:c.888G>C	p.Glu296Asp	p.E296D	ENST00000289081	NM_000136.2	296	gaG/gaC																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49423021	49423021	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0005931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	230	379	0	ENST00000301067.7:c.14076-2A>G		p.X4692_splice	ENST00000301067	NM_003482.3	4692																																														NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32906873	32906873	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	27	246	0	ENST00000380152.3:c.1258G>C	p.Asp420His	p.D420H	ENST00000380152		420	Gac/Cac																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89351185	89351185	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1003	131	531	0	ENST00000301030.4:c.1765C>G	p.Leu589Val	p.L589V	ENST00000301030	NM_001256183.1	589	Ctg/Gtg																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971032	21971065	+	frameshift_variant	Frame_Shift_Del	DEL	GCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGT	GCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGT	-			P-0005931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	179	243	0	ENST00000304494.5:c.293_326del	p.His98ProfsTer37	p.H98Pfs*37	ENST00000304494	NM_000077.4	98	cACCGGGCCGGGGCGCGGCTGGACGTGCGCGATGCc/cc																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187627744	187627745	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AACGCCAG			P-0005931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	148	416	0	ENST00000441802.2:c.3230_3237dup	p.Gly1080LeufsTer8	p.G1080Lfs*8	ENST00000441802	NM_005245.3	1079	-/CTGGCGTT																																													NEWRECORD																																		
GPS2	2874	MSKCC	GRCh37	17	7217858	7217858	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	100	709	1	ENST00000380728.2:c.153del	p.Lys52ArgfsTer11	p.K52Rfs*11	ENST00000380728		51	agG/ag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578376	7578379	+	frameshift_variant	Frame_Shift_Del	DEL	CTAT	CTAT	-			P-0007343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	19	259	0	ENST00000269305.4:c.551_554delATAG	p.Asp184AlafsTer62	p.D184Afs*62	ENST00000269305	NM_001126112.2	184	gATAGc/gc																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	158	380	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720805	89720808	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	95	146	0	ENST00000371953.3:c.956_959delCTTT	p.Thr319LysfsTer24	p.T319Kfs*24	ENST00000371953	NM_000314.4	319	aCTTTa/aa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	436	448	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16257143	16257143	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	303	610	4	ENST00000375759.3:c.4408C>T	p.Arg1470Ter	p.R1470*	ENST00000375759	NM_015001.2	1470	Cga/Tga																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	151	264	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103519134	103519135	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	295	595	1	ENST00000355739.4:c.2478dup	p.Asn827Ter	p.N827*	ENST00000355739	NM_000123.3	824	-/T																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587776783		P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	152	378	0	ENST00000267163.4:c.1215+1G>A		p.X405_splice	ENST00000267163	NM_000321.2	405																																														NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72830902	72830903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	388	988	1	ENST00000268489.5:c.5677_5678dup	p.Asp1894GlyfsTer21	p.D1894Gfs*21	ENST00000268489	NM_006885.3	1893	agg/agAGg																																													NEWRECORD																																		
FYN	2534	MSKCC	GRCh37	6	112041025	112041025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1096	532	728	0	ENST00000368678.4:c.230G>A	p.Arg77His	p.R77H	ENST00000368678		77	cGt/cAt																																													NEWRECORD																																		
KLF4	9314	MSKCC	GRCh37	9	110249405	110249405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	348	761	0	ENST00000374672.4:c.1168C>T	p.Arg390Trp	p.R390W	ENST00000374672	NM_004235.4	390	Cgg/Tgg																																													NEWRECORD																																		
SDHA	6389	MSKCC	GRCh37	5	251542	251542	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200397144		P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	157	362	1	ENST00000264932.6:c.1753C>T	p.Arg585Trp	p.R585W	ENST00000264932	NM_004168.2	585	Cgg/Tgg																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43596032	43596032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	199	482	0	ENST00000355710.3:c.199C>T	p.Arg67Cys	p.R67C	ENST00000355710	NM_020975.4	67	Cgc/Tgc																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	150016264	150016264	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	276	651	3	ENST00000253339.5:c.442C>T	p.Arg148Ter	p.R148*	ENST00000253339		148	Cga/Tga																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16258878	16258878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	310	666	0	ENST00000375759.3:c.6143C>T	p.Ala2048Val	p.A2048V	ENST00000375759	NM_015001.2	2048	gCt/gTt																																													NEWRECORD																																		
REL	5966	MSKCC	GRCh37	2	61118871	61118871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	261	500	0	ENST00000295025.8:c.64C>T	p.Arg22Cys	p.R22C	ENST00000295025	NM_002908.2	22	Cgt/Tgt																																													NEWRECORD																																		
INHA	3623	MSKCC	GRCh37	2	220437229	220437229	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753969684		P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	325	757	1	ENST00000243786.2:c.133G>A	p.Ala45Thr	p.A45T	ENST00000243786	NM_002191.3	45	Gcg/Acg																																													NEWRECORD																																		
FOXL2	668	MSKCC	GRCh37	3	138664664	138664664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			55	22	28	0	ENST00000330315.3:c.901G>A	p.Ala301Thr	p.A301T	ENST00000330315	NM_023067.3	301	Gcg/Acg																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131940596	131940596	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	356	562	0	ENST00000265335.6:c.2623C>G	p.Leu875Val	p.L875V	ENST00000265335		875	Ctt/Gtt																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149502659	149502659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	154	333	0	ENST00000261799.4:c.2129C>T	p.Pro710Leu	p.P710L	ENST00000261799	NM_002609.3	710	cCg/cTg																																													NEWRECORD																																		
PARK2	5071	MSKCC	GRCh37	6	162206804	162206804	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	190	381	0	ENST00000366898.1:c.871G>A	p.Ala291Thr	p.A291T	ENST00000366898	NM_004562.2	291	Gct/Act																																													NEWRECORD																																		
PMS2	5395	MSKCC	GRCh37	7	6029581	6029581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	504	572	0	ENST00000265849.7:c.994G>A	p.Val332Ile	p.V332I	ENST00000265849	NM_000535.5	332	Gtt/Att																																													NEWRECORD																																		
PMS2	5395	MSKCC	GRCh37	7	6038848	6038848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	627	650	0	ENST00000265849.7:c.596G>A	p.Arg199His	p.R199H	ENST00000265849	NM_000535.5	199	cGt/cAt																																													NEWRECORD																																		
TRAF2	7186	MSKCC	GRCh37	9	139802558	139802558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1125	175	714	0	ENST00000247668.2:c.403G>A	p.Glu135Lys	p.E135K	ENST00000247668	NM_021138.3	135	Gaa/Aaa																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43598056	43598056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	177	345	0	ENST00000355710.3:c.604G>A	p.Val202Met	p.V202M	ENST00000355710	NM_020975.4	202	Gtg/Atg																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70451546	70451546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	288	586	0	ENST00000373644.4:c.6386C>T	p.Ala2129Val	p.A2129V	ENST00000373644	NM_030625.2	2129	gCg/gTg																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	438183	438183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	78	453	0	ENST00000399788.2:c.1786C>T	p.Arg596Cys	p.R596C	ENST00000399788	NM_001042603.1	596	Cgt/Tgt																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46285669	46285669	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	203	501	0	ENST00000334344.6:c.5029C>T	p.Arg1677Ter	p.R1677*	ENST00000334344	NM_152641.2	1677	Cga/Tga																																													NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28602330	28602330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	290	552	0	ENST00000241453.7:c.2038G>A	p.Ala680Thr	p.A680T	ENST00000241453	NM_004119.2	680	Gcg/Acg																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110436413	110436413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	176	414	0	ENST00000375856.3:c.1988C>T	p.Ala663Val	p.A663V	ENST00000375856	NM_003749.2	663	gCg/gTg																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3778738	3778738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	66	452	2	ENST00000262367.5:c.6310C>T	p.Arg2104Cys	p.R2104C	ENST00000262367	NM_004380.2	2104	Cgc/Tgc																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	10274018	10274018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	255	631	0	ENST00000330684.3:c.251C>T	p.Thr84Met	p.T84M	ENST00000330684	NM_001134407.1	84	aCg/aTg																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81939042	81939042	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1110	352	869	0	ENST00000359376.3:c.1397T>C	p.Val466Ala	p.V466A	ENST00000359376	NM_002661.3	466	gTc/gCc																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89351736	89351736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1224	411	911	3	ENST00000301030.4:c.1214G>A	p.Arg405His	p.R405H	ENST00000301030	NM_001256183.1	405	cGt/cAt																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78858817	78858817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	188	456	0	ENST00000306801.3:c.1852G>A	p.Ala618Thr	p.A618T	ENST00000306801	NM_020761.2	618	Gca/Aca																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78919548	78919548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	40	443	0	ENST00000306801.3:c.3107C>T	p.Pro1036Leu	p.P1036L	ENST00000306801	NM_020761.2	1036	cCg/cTg																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10291562	10291562	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	116	610	0	ENST00000340748.4:c.118-1G>A		p.X40_splice	ENST00000340748		40																																														NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15291860	15291860	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146214060		P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	224	574	0	ENST00000263388.2:c.2906G>A	p.Arg969Gln	p.R969Q	ENST00000263388	NM_000435.2	969	cGg/cAg																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42793159	42793159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	201	501	1	ENST00000575354.2:c.1051C>T	p.Arg351Trp	p.R351W	ENST00000575354	NM_015125.3	351	Cgg/Tgg																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42797955	42797955	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140554618		P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	313	749	2	ENST00000575354.2:c.4007C>T	p.Pro1336Leu	p.P1336L	ENST00000575354	NM_015125.3	1336	cCg/cTg																																													NEWRECORD																																		
NCOA3	8202	MSKCC	GRCh37	20	46277819	46277819	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1406	179	636	0	ENST00000371998.3:c.3617T>C	p.Met1206Thr	p.M1206T	ENST00000371998		1206	aTg/aCg																																													NEWRECORD																																		
ERG	2078	MSKCC	GRCh37	21	39772519	39772519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	307	566	1	ENST00000288319.7:c.722C>T	p.Thr241Met	p.T241M	ENST00000288319	NM_182918.3	241	aCg/aTg																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41574253	41574253	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs201097711		P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	245	598	1	ENST00000263253.7:c.6538C>T	p.Arg2180Ter	p.R2180*	ENST00000263253	NM_001429.3	2180	Cga/Tga																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44894174	44894174	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	358	354	0	ENST00000377967.4:c.565-2A>G		p.X189_splice	ENST00000377967	NM_021140.2	189																																														NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47039372	47039372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	334	322	1	ENST00000329236.7:c.764G>A	p.Arg255His	p.R255H	ENST00000329236	NM_001204466.1	255	cGc/cAc																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65330647	65330648	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	104	434	0	ENST00000342505.4:c.998_999del	p.Ser333CysfsTer2	p.S333Cfs*2	ENST00000342505	NM_002227.2	333	tCT/t																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48018082	48018082	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	259	565	0	ENST00000234420.5:c.278del	p.Gly93GlufsTer56	p.G93Efs*56	ENST00000234420	NM_000179.2	93	Gga/ga																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	356	309	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0004957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	572	445	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0004957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	307	423	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0004957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	145	214	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																													NEWRECORD																																		
ERRFI1	54206	MSKCC	GRCh37	1	8073717	8073717	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1047	896	704	0	ENST00000377482.5:c.942C>A	p.Asp314Glu	p.D314E	ENST00000377482	NM_018948.3	314	gaC/gaA																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72832038	72832038	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1355	381	681	0	ENST00000268489.5:c.4543G>C	p.Glu1515Gln	p.E1515Q	ENST00000268489	NM_006885.3	1515	Gaa/Caa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174000	112174000	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	114	340	0	ENST00000257430.4:c.2709del	p.Asp903GlufsTer13	p.D903Efs*13	ENST00000257430	NM_000038.5	903	gaC/ga																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	46	431	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	49	433	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	106	428	3	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47165212	47165213	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	56	449	0	ENST00000409792.3:c.913dup	p.Thr305AsnfsTer4	p.T305Nfs*4	ENST00000409792	NM_014159.6	305	aca/aAca																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	21	89	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																													NEWRECORD																																		
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	80	554	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32910661	32910662	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	72	778	3	ENST00000380152.3:c.2175dup	p.Val726SerfsTer25	p.V726Sfs*25	ENST00000380152		723	-/A																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55221711	55221711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	110	331	0	ENST00000275493.2:c.755G>A	p.Arg252His	p.R252H	ENST00000275493	NM_005228.3	252	cGc/cAc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	35	441	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	154	634	3	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																													NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	58	612	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	51	646	3	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	142	707	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41743896	41743896	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	144	481	0	ENST00000301178.4:c.836delC	p.Pro279GlnfsTer18	p.P279Qfs*18	ENST00000301178	NM_021913.4	277	gaC/ga																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187558039	187558039	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	51	308	0	ENST00000441802.2:c.3672delC	p.Lys1225AsnfsTer9	p.K1225Nfs*9	ENST00000441802	NM_005245.3	1224	ccC/cc																																													NEWRECORD																																		
NUP93	9688	MSKCC	GRCh37	16	56872937	56872937	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	102	670	5	ENST00000308159.5:c.2097delT	p.Phe699LeufsTer19	p.F699Lfs*19	ENST00000308159	NM_014669.4	698	Ttt/tt																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176709485	176709485	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	84	646	0	ENST00000439151.2:c.5912A>G	p.Tyr1971Cys	p.Y1971C	ENST00000439151	NM_022455.4	1971	tAt/tGt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174910	112174910	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	43	429	0	ENST00000257430.4:c.3622del	p.Thr1208ProfsTer57	p.T1208Pfs*57	ENST00000257430	NM_000038.5	1207	Aaa/aa																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16257915	16257915	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	107	211	0	ENST00000375759.3:c.5180A>G	p.Gln1727Arg	p.Q1727R	ENST00000375759	NM_015001.2	1727	cAg/cGg																																													NEWRECORD																																		
MLH1	4292	MSKCC	GRCh37	3	37045935	37045935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	60	499	0	ENST00000231790.2:c.350C>T	p.Thr117Met	p.T117M	ENST00000231790	NM_000249.3	117	aCg/aTg																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89478272	89478272	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	43	479	0	ENST00000336596.2:c.2091T>G	p.Ile697Met	p.I697M	ENST00000336596	NM_005233.5	697	atT/atG																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55151655	55151655	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	68	457	0	ENST00000257290.5:c.2439+2T>C		p.X813_splice	ENST00000257290	NM_006206.4	813																																														NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173962	112173962	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	46	318	0	ENST00000257430.4:c.2671A>G	p.Met891Val	p.M891V	ENST00000257430	NM_000038.5	891	Atg/Gtg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174369	112174369	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	39	369	0	ENST00000257430.4:c.3078T>A	p.Asn1026Lys	p.N1026K	ENST00000257430	NM_000038.5	1026	aaT/aaA																																													NEWRECORD																																		
FGFR4	2264	MSKCC	GRCh37	5	176520258	176520258	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	130	263	0	ENST00000292408.4:c.1177C>T	p.Gln393Ter	p.Q393*	ENST00000292408	NM_213647.1	393	Cag/Tag																																													NEWRECORD																																		
VEGFA	7422	MSKCC	GRCh37	6	43748503	43748503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	167	641	0	ENST00000523873.1:c.457C>T	p.Arg153Ter	p.R153*	ENST00000523873		153	Cga/Tga																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55268075	55268075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	84	477	0	ENST00000275493.2:c.2915C>T	p.Ala972Val	p.A972V	ENST00000275493	NM_005228.3	972	gCc/gTc																																													NEWRECORD																																		
JAK2	3717	MSKCC	GRCh37	9	5123095	5123095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	37	477	0	ENST00000381652.3:c.3151A>G	p.Ile1051Val	p.I1051V	ENST00000381652	NM_004972.3	1051	Att/Gtt																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139390915	139390915	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	118	349	0	ENST00000277541.6:c.7276A>G	p.Ser2426Gly	p.S2426G	ENST00000277541	NM_017617.3	2426	Agc/Ggc																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139399279	139399279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	119	358	1	ENST00000277541.6:c.4864C>T	p.Arg1622Cys	p.R1622C	ENST00000277541	NM_017617.3	1622	Cgc/Tgc																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925397	114925397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	153	643	3	ENST00000543371.1:c.1475C>T	p.Ser492Leu	p.S492L	ENST00000543371	NM_001198531.1	492	tCg/tTg																																													NEWRECORD																																		
FGFR2	2263	MSKCC	GRCh37	10	123279581	123279581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	122	437	1	ENST00000358487.5:c.851C>T	p.Ala284Val	p.A284V	ENST00000358487	NM_000141.4	284	gCc/gTc																																													NEWRECORD																																		
LATS2	26524	MSKCC	GRCh37	13	21563018	21563018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	83	255	1	ENST00000382592.4:c.901G>A	p.Gly301Ser	p.G301S	ENST00000382592	NM_014572.2	301	Ggc/Agc																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32911797	32911797	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	55	662	0	ENST00000380152.3:c.3305A>G	p.Asn1102Ser	p.N1102S	ENST00000380152		1102	aAt/aGt																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89346783	89346783	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	93	474	0	ENST00000301030.4:c.6167A>G	p.Tyr2056Cys	p.Y2056C	ENST00000301030	NM_001256183.1	2056	tAc/tGc																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29679273	29679273	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	56	346	0	ENST00000358273.4:c.7458-2A>C		p.X2486_splice	ENST00000358273	NM_001042492.2	2486																																														NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435777	56435777	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1055597951		P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	85	239	0	ENST00000407977.2:c.1360C>T	p.Arg454Cys	p.R454C	ENST00000407977		454	Cgc/Tgc																																													NEWRECORD																																		
MALT1	10892	MSKCC	GRCh37	18	56411707	56411707	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	146	605	0	ENST00000348428.3:c.1891T>C	p.Tyr631His	p.Y631H	ENST00000348428	NM_006785.3	631	Tac/Cac																																													NEWRECORD																																		
CCNE1	898	MSKCC	GRCh37	19	30313211	30313211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	82	638	0	ENST00000262643.3:c.905C>T	p.Ser302Leu	p.S302L	ENST00000262643	NM_001238.2	302	tCg/tTg																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72830450	72830450	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	95	559	0	ENST00000268489.5:c.6131del	p.Pro2044LeufsTer57	p.P2044Lfs*57	ENST00000268489	NM_006885.3	2044	cCt/ct																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	12028648	12028650	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	65	541	1	ENST00000353533.5:c.854_856del	p.Asp285del	p.D285del	ENST00000353533	NM_003010.3	284	tATGat/tat																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3900401	3900401	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	132	432	0	ENST00000262367.5:c.695del	p.Gln232ArgfsTer12	p.Q232Rfs*12	ENST00000262367	NM_004380.2	232	cAg/cg																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202151254	202151254	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	110	632	0	ENST00000358485.4:c.1557delG	p.Lys520AsnfsTer10	p.K520Nfs*10	ENST00000358485	NM_001080125.1	518	atG/at																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151846107	151846107	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	98	384	0	ENST00000262189.6:c.12905del	p.Pro4302LeufsTer24	p.P4302Lfs*24	ENST00000262189	NM_170606.2	4302	cCt/ct																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49434759	49434759	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	128	358	2	ENST00000301067.7:c.6794delG	p.Gly2265GlufsTer21	p.G2265Efs*21	ENST00000301067	NM_003482.3	2265	gGa/ga																																													NEWRECORD																																		
MYCN	4613	MSKCC	GRCh37	2	16082436	16082436	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	12	222	0	ENST00000281043.3:c.250G>C	p.Glu84Gln	p.E84Q	ENST00000281043	NM_005378.4	84	Gag/Cag																																													NEWRECORD																																		
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11552761		P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	27	423	0	ENST00000418115.1:c.50G>C	p.Gly17Ala	p.G17A	ENST00000418115	NM_001664.2	17	gGa/gCa																																													NEWRECORD																																		
EIF4A2	1974	MSKCC	GRCh37	3	186505595	186505595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	107	399	0	ENST00000323963.5:c.1003C>T	p.Arg335Cys	p.R335C	ENST00000323963		335	Cgc/Tgc																																													NEWRECORD																																		
FGFR4	2264	MSKCC	GRCh37	5	176517758	176517758	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	44	488	0	ENST00000292408.4:c.368C>G	p.Ser123Cys	p.S123C	ENST00000292408	NM_213647.1	123	tCc/tGc																																													NEWRECORD																																		
HIST1H3E	8353	MSKCC	GRCh37	6	26225674	26225674	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	78	708	0	ENST00000360408.1:c.292G>C	p.Glu98Gln	p.E98Q	ENST00000360408	NM_003532.2	98	Gag/Cag																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8485282	8485282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	27	357	0	ENST00000356435.5:c.3098C>T	p.Ser1033Phe	p.S1033F	ENST00000356435		1033	tCc/tTc																																													NEWRECORD																																		
FGFR2	2263	MSKCC	GRCh37	10	123276914	123276914	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	31	304	0	ENST00000358487.5:c.1003G>C	p.Glu335Gln	p.E335Q	ENST00000358487	NM_000141.4	335	Gag/Cag																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49445534	49445534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	10	117	0	ENST00000301067.7:c.1932G>A	p.Met644Ile	p.M644I	ENST00000301067	NM_003482.3	644	atG/atA																																													NEWRECORD																																		
PTPN11	5781	MSKCC	GRCh37	12	112891189	112891189	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	17	211	0	ENST00000351677.2:c.523C>T	p.Gln175Ter	p.Q175*	ENST00000351677	NM_002834.3	175	Cag/Tag																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115114205	115114205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	29	389	0	ENST00000257566.3:c.1012G>A	p.Glu338Lys	p.E338K	ENST00000257566	NM_016569.3	338	Gag/Aag																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061264	38061264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	52	369	0	ENST00000250448.2:c.725C>A	p.Ser242Tyr	p.S242Y	ENST00000250448	NM_004496.3	242	tCc/tAc																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061283	38061283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	64	405	0	ENST00000250448.2:c.706G>A	p.Asp236Asn	p.D236N	ENST00000250448	NM_004496.3	236	Gac/Aac																																													NEWRECORD																																		
CD276	80381	MSKCC	GRCh37	15	73996086	73996086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	14	370	1	ENST00000318443.5:c.820C>T	p.Pro274Ser	p.P274S	ENST00000318443	NM_001024736.1	274	Cct/Tct																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9857558	9857558	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	16	192	0	ENST00000330684.3:c.3843G>C	p.Lys1281Asn	p.K1281N	ENST00000330684	NM_001134407.1	1281	aaG/aaC																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89341344	89341344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	15	267	0	ENST00000301030.4:c.7591G>C	p.Glu2531Gln	p.E2531Q	ENST00000301030	NM_001256183.1	2531	Gag/Cag																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52643617	52643618	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	42	265	0	ENST00000394830.3:c.2278_2279insT	p.Arg760LeufsTer8	p.R760Lfs*8	ENST00000394830	NM_018313.4	760	cgc/cTgc																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56489499	56489499	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	38	256	0	ENST00000267101.3:c.1967del	p.Phe656SerfsTer2	p.F656Sfs*2	ENST00000267101	NM_001982.3	655	aTt/at																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0004946-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			510	67	652	1	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28913339	28913339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004946-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			655	46	861	3	ENST00000282397.4:c.2454C>A	p.Ser818Arg	p.S818R	ENST00000282397	NM_002019.4	818	agC/agA																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29563009	29563009	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004946-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			719	44	843	0	ENST00000358273.4:c.3944A>C	p.Gln1315Pro	p.Q1315P	ENST00000358273	NM_001042492.2	1315	cAa/cCa																																													NEWRECORD																																		
ZRSR2	8233	MSKCC	GRCh37	X	15809096	15809097	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004946-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			240	122	412	0	ENST00000307771.7:c.81_82insC	p.Lys28GlnfsTer27	p.K28Qfs*27	ENST00000307771	NM_005089.3	27	-/C																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	52	318	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
BCL2L11	10018	MSKCC	GRCh37	2	111881621	111881621	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	80	344	0	ENST00000393256.3:c.299A>G	p.Asp100Gly	p.D100G	ENST00000393256	NM_006538.4	100	gAc/gGc																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143094874	143094874	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	52	638	0	ENST00000262992.4:c.1270A>T	p.Ile424Leu	p.I424L	ENST00000262992	NM_001101669.1	424	Ata/Tta																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73336102	73336102	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	31	436	1	ENST00000377767.4:c.2301A>T	p.Leu767Phe	p.L767F	ENST00000377767	NM_014953.3	767	ttA/ttT																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9858784	9858784	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	26	275	0	ENST00000330684.3:c.2617G>T	p.Gly873Ter	p.G873*	ENST00000330684	NM_001134407.1	873	Gga/Tga																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15995212	15995213	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	53	605	0	ENST00000268712.3:c.2980dup	p.Cys994LeufsTer24	p.C994Lfs*24	ENST00000268712	NM_006311.3	994	tgt/tTgt																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1220707	1220708	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0010307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	110	323	1	ENST00000326873.7:c.725_726delinsTT	p.Gly242Val	p.G242V	ENST00000326873	NM_000455.4	242	gGG/gTT																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916933	178916933	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	267	470	0	ENST00000263967.3:c.320A>T	p.Asn107Ile	p.N107I	ENST00000263967	NM_006218.2	107	aAc/aTc																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68844247	68844247	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0014785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	241	474	0	ENST00000261769.5:c.832+3A>G		p.X278_splice	ENST00000261769	NM_004360.3	278																																														NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	49037933	49037934	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	272	501	0	ENST00000267163.4:c.2174dup	p.Thr726AsnfsTer25	p.T726Nfs*25	ENST00000267163	NM_000321.2	725	gta/gTta																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16089929	16089940	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	GCTGTTGCTGCA	GCTGTTGCTGCA	-			P-0014785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	211	433	1	ENST00000268712.3:c.170_181del	p.Leu57_Gln61delinsTer	p.L57_Q61delins*	ENST00000268712	NM_006311.3	57	tTGCAGCAACAGCag/tag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0003839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	348	516	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0003839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	247	402	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156837898	156837898	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0003839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	182	332	1	ENST00000524377.1:c.431T>C	p.Val144Ala	p.V144A	ENST00000524377	NM_002529.3	144	gTc/gCc																																													NEWRECORD																																		
AKT3	10000	MSKCC	GRCh37	1	243716032	243716032	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0003839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	280	254	0	ENST00000263826.5:c.1162C>T	p.Arg388Cys	p.R388C	ENST00000263826	NM_005465.4	388	Cgc/Tgc																																													NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189590774	189590774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	122	367	0	ENST00000264731.3:c.1339C>T	p.Leu447Phe	p.L447F	ENST00000264731	NM_003722.4	447	Ctt/Ttt																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89653805	89653805	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	95	266	0	ENST00000371953.3:c.103A>T	p.Met35Leu	p.M35L	ENST00000371953	NM_000314.4	35	Atg/Ttg																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67670736	67670736	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	207	357	0	ENST00000264010.4:c.1981C>G	p.Gln661Glu	p.Q661E	ENST00000264010	NM_006565.3	661	Cag/Gag																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31023720	31023720	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	66	309	0	ENST00000375687.4:c.3205G>T	p.Val1069Leu	p.V1069L	ENST00000375687	NM_015338.5	1069	Gta/Tta																																													NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31386367	31386367	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374520428		P-0003839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	199	342	0	ENST00000328111.2:c.1592G>A	p.Arg531His	p.R531H	ENST00000328111	NM_006892.3	531	cGc/cAc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175749	112175750	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	88	206	0	ENST00000257430.4:c.4459dup	p.Thr1487AsnfsTer27	p.T1487Nfs*27	ENST00000257430	NM_000038.5	1486	-/A																																													NEWRECORD																																		
MDM4	4194	MSKCC	GRCh37	1	204511954	204511954	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	148	360	0	ENST00000367182.3:c.554G>T	p.Arg185Met	p.R185M	ENST00000367182	NM_001278516.1	185	aGg/aTg																																													NEWRECORD																																		
CXCR4	7852	MSKCC	GRCh37	2	136873449	136873449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	374	752	0	ENST00000241393.3:c.49G>T	p.Gly17Cys	p.G17C	ENST00000241393	NM_003467.2	17	Ggc/Tgc																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	94120524	94120524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	282	675	1	ENST00000369303.4:c.527C>T	p.Pro176Leu	p.P176L	ENST00000369303	NM_004440.3	176	cCt/cTt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0008485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	184	362	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1220382	1220382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	155	356	0	ENST00000326873.7:c.475C>T	p.Gln159Ter	p.Q159*	ENST00000326873	NM_000455.4	159	Cag/Tag																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10610160	10610160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	34	383	0	ENST00000171111.5:c.550G>A	p.Ala184Thr	p.A184T	ENST00000171111	NM_203500.1	184	Gcc/Acc																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47045501	47045501	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	252	229	1	ENST00000329236.7:c.2237del	p.Lys746SerfsTer23	p.K746Sfs*23	ENST00000329236	NM_001204466.1	745	gAa/ga																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151945045	151945045	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	TT			P-0008485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	30	220	0	ENST00000262189.6:c.2474delinsAA	p.Met825LysfsTer3	p.M825Kfs*3	ENST00000262189	NM_170606.2	825	aTg/aAAg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0013822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	203	585	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579323	7579324	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	52	471	0	ENST00000269305.4:c.363dup	p.Val122CysfsTer27	p.V122Cfs*27	ENST00000269305	NM_001126112.2	121	-/T																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0007305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	118	299	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	44	380	0	ENST00000269305.4:c.706T>G	p.Tyr236Asp	p.Y236D	ENST00000269305	NM_001126112.2	236	Tac/Gac																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56161171	56161171	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	45	356	0	ENST00000399503.3:c.1040G>T	p.Cys347Phe	p.C347F	ENST00000399503	NM_005921.1	347	tGc/tTc																																													NEWRECORD																																		
ETV6	2120	MSKCC	GRCh37	12	12022609	12022609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	58	390	0	ENST00000396373.4:c.715C>T	p.Pro239Ser	p.P239S	ENST00000396373	NM_001987.4	239	Ccc/Tcc																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70120175	70120175	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	29	222	0	ENST00000245479.2:c.1177C>T	p.Gln393Ter	p.Q393*	ENST00000245479	NM_000346.3	393	Cag/Tag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112155031	112155032	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	29	374	0	ENST00000257430.4:c.1307dup	p.Asn436LysfsTer8	p.N436Kfs*8	ENST00000257430	NM_000038.5	434	-/A																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	226	235	0				ENST00000310581	NM_198253.2																																															NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0008133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	643	442	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	292	528	2	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175749	112175750	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	427	323	0	ENST00000257430.4:c.4459dup	p.Thr1487AsnfsTer27	p.T1487Nfs*27	ENST00000257430	NM_000038.5	1486	-/A																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95557639	95557639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	599	463	0	ENST00000343455.3:c.5428G>A	p.Asp1810Asn	p.D1810N	ENST00000343455	NM_177438.2	1810	Gat/Aat																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0008133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			42	353	288	0	ENST00000269305.4:c.97-1G>C		p.X33_splice	ENST00000269305	NM_001126112.2	33																																														NEWRECORD																																		
MAP2K1	5604	MSKCC	GRCh37	15	66729175	66729175	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	487	353	0	ENST00000307102.5:c.383G>T	p.Gly128Val	p.G128V	ENST00000307102	NM_002755.3	128	gGc/gTc																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78938074	78938074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	591	447	0	ENST00000306801.3:c.3952G>A	p.Val1318Met	p.V1318M	ENST00000306801	NM_020761.2	1318	Gtg/Atg																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11101830	11101830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	170	406	0	ENST00000344626.4:c.1250G>A	p.Arg417His	p.R417H	ENST00000344626	NM_003072.3	417	cGc/cAc																																													NEWRECORD																																		
MAP2K2	5605	MSKCC	GRCh37	19	4099253	4099255	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0008133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	572	437	0	ENST00000262948.5:c.863_865del	p.Glu288del	p.E288del	ENST00000262948	NM_030662.3	288	gAAGga/gga																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	115	528	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578552	7578553	+	stop_gained,splice_region_variant	Nonsense_Mutation	INS	-	-	TAC			P-0014252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	284	1404	1	ENST00000269305.4:c.376-1_377dup	p.Thr125_Tyr126insTer	p.T125_Y126ins*	ENST00000269305	NM_001126112.2	126	tac/taGTAc																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89259362	89259362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	100	451	0	ENST00000336596.2:c.506G>A	p.Arg169Lys	p.R169K	ENST00000336596	NM_005233.5	169	aGa/aAa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175759	112175760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0014252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	167	269	0	ENST00000257430.4:c.4469_4470insAA	p.His1490GlnfsTer18	p.H1490Qfs*18	ENST00000257430	NM_000038.5	1490	cat/cAAat																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	329	427	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	91	522	1	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	166	602	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974782	21974783	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CAGT			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	42	279	0	ENST00000304494.5:c.41_44dup	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tgg/tgACTGg																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16256670	16256670	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	79	438	0	ENST00000375759.3:c.3935A>T	p.Tyr1312Phe	p.Y1312F	ENST00000375759	NM_015001.2	1312	tAt/tTt																																													NEWRECORD																																		
RFWD2	64326	MSKCC	GRCh37	1	175996746	175996746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	103	651	2	ENST00000367669.3:c.1691G>A	p.Ser564Asn	p.S564N	ENST00000367669	NM_022457.5	564	aGc/aAc																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25965535	25965535	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	172	595	0	ENST00000435504.4:c.3671A>G	p.Asp1224Gly	p.D1224G	ENST00000435504		1224	gAt/gGt																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266898	41266898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	85	555	0	ENST00000349496.5:c.569G>A	p.Arg190His	p.R190H	ENST00000349496	NM_001904.3	190	cGt/cAt																																													NEWRECORD																																		
MST1	4485	MSKCC	GRCh37	3	49722927	49722927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	41	250	0	ENST00000449682.2:c.1400C>T	p.Pro467Leu	p.P467L	ENST00000449682	NM_020998.3	467	cCg/cTg																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56160715	56160715	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	92	566	0	ENST00000399503.3:c.989G>C	p.Gly330Ala	p.G330A	ENST00000399503	NM_005921.1	330	gGa/gCa																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180043926	180043926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	186	597	1	ENST00000261937.6:c.3070G>A	p.Gly1024Arg	p.G1024R	ENST00000261937	NM_182925.4	1024	Ggg/Agg																																													NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50459536	50459536	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	55	404	0	ENST00000331340.3:c.825G>C	p.Lys275Asn	p.K275N	ENST00000331340	NM_006060.4	275	aaG/aaC																																													NEWRECORD																																		
MDM2	4193	MSKCC	GRCh37	12	69218405	69218405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	97	560	0	ENST00000462284.1:c.497C>T	p.Ser166Phe	p.S166F	ENST00000462284	NM_002392.5	166	tCt/tTt																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119945	70119945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	62	320	0	ENST00000245479.2:c.947C>A	p.Thr316Lys	p.T316K	ENST00000245479	NM_000346.3	316	aCg/aAg																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974678	21974684	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TGGATCG	TGGATCG	-			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	65	421	0	ENST00000304494.5:c.143_149del	p.Pro48ArgfsTer3	p.P48Rfs*3	ENST00000304494	NM_000077.4	48	cCGATCCAg/cg																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15935625	15935626	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	66	424	0	ENST00000268712.3:c.7307_7308del	p.Ser2436Ter	p.S2436*	ENST00000268712	NM_006311.3	2436	tCG/t																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	238	279	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0007062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	221	350	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023633	27023634	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCGGCTC			P-0007062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	59	132	0	ENST00000324856.7:c.741_747dup	p.Lys250ArgfsTer152	p.K250Rfs*152	ENST00000324856	NM_006015.4	247	gcc/gCCGGCTCcc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	67	279	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
FGFR4	2264	MSKCC	GRCh37	5	176522416	176522416	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	123	401	0	ENST00000292408.4:c.1605C>G	p.Asn535Lys	p.N535K	ENST00000292408	NM_213647.1	535	aaC/aaG																																													NEWRECORD																																		
CCND2	894	MSKCC	GRCh37	12	4388046	4388046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	77	265	0	ENST00000261254.3:c.532C>T	p.Arg178Cys	p.R178C	ENST00000261254	NM_001759.3	178	Cgc/Tgc																																													NEWRECORD																																		
ERCC2	2068	MSKCC	GRCh37	19	45856520	45856520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	108	577	0	ENST00000391945.4:c.1738G>A	p.Ala580Thr	p.A580T	ENST00000391945	NM_000400.3	580	Gcc/Acc																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68862134	68862135	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	115	560	0	ENST00000261769.5:c.2223dup	p.Leu742ThrfsTer6	p.L742Tfs*6	ENST00000261769	NM_004360.3	741	tta/ttAa																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11193207	11193207	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	264	329	0	ENST00000361445.4:c.5294A>G	p.Asn1765Ser	p.N1765S	ENST00000361445	NM_004958.3	1765	aAt/aGt																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72923738	72923738	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1220	69	651	2	ENST00000268489.5:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000268489	NM_006885.3	1114	Cga/Tga																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	49037923	49037924	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	37	349	0	ENST00000267163.4:c.2167dup	p.Ile723AsnfsTer28	p.I723Nfs*28	ENST00000267163	NM_000321.2	721	-/A																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0006602-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			211	97	375	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63845529	63845529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006602-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			198	94	401	0	ENST00000279873.7:c.1268G>A	p.Arg423Gln	p.R423Q	ENST00000279873	NM_032199.2	423	cGg/cAg																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32906663	32906663	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006602-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			183	12	358	0	ENST00000380152.3:c.1048G>C	p.Glu350Gln	p.E350Q	ENST00000380152		350	Gaa/Caa																																													NEWRECORD																																		
STAT3	6774	MSKCC	GRCh37	17	40489543	40489544	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGAGAGTTTTC			P-0006602-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			135	33	507	1	ENST00000264657.5:c.696_706dup	p.Thr236ArgfsTer29	p.T236Rfs*29	ENST00000264657	NM_139276.2	236	acg/aGAAAACTCTCAcg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	83	462	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10286275	10286275	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	85	481	0	ENST00000340748.4:c.541C>G	p.Gln181Glu	p.Q181E	ENST00000340748		181	Cag/Gag																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56179366	56179367	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	82	426	0	ENST00000399503.3:c.3680dup	p.Pro1228ThrfsTer11	p.P1228Tfs*11	ENST00000399503	NM_005921.1	1227	cta/cTta																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68842631	68842632	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	112	588	0	ENST00000261769.5:c.568dupT	p.Tyr190LeufsTer9	p.Y190Lfs*9	ENST00000261769	NM_004360.3	189	-/T																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70117962	70117963	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0007860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	11	167	0	ENST00000245479.2:c.431+1dup		p.R144fs	ENST00000245479	NM_000346.3	144	aga/aGga																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0001212-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	96	140	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	12044463	12044463	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0001212-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	71	252	0	ENST00000353533.5:c.1087-1G>A		p.X363_splice	ENST00000353533	NM_003010.3	363																																														NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17950348	17950348	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199659728		P-0001212-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			800	192	526	0	ENST00000458235.1:c.1379G>A	p.Gly460Glu	p.G460E	ENST00000458235	NM_000215.3	460	gGg/gAg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101053	27101053	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001212-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			806	69	617	0	ENST00000324856.7:c.4336del	p.Arg1446AspfsTer35	p.R1446Dfs*35	ENST00000324856	NM_006015.4	1445	cgC/cg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105617	27105618	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTT			P-0001212-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			792	89	547	0	ENST00000324856.7:c.5231_5232insTGCT	p.Leu1745AlafsTer12	p.L1745Afs*12	ENST00000324856	NM_006015.4	1743	acg/acGCTTg																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70404556	70404558	+	inframe_deletion	In_Frame_Del	DEL	TAC	TAC	-			P-0001212-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			562	189	474	0	ENST00000373644.4:c.2071_2073del	p.Thr691del	p.T691del	ENST00000373644	NM_030625.2	690	caTACt/cat																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68847226	68847227	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001212-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			238	196	375	0	ENST00000261769.5:c.1150dup	p.Val384GlyfsTer3	p.V384Gfs*3	ENST00000261769	NM_004360.3	383	cag/caGg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	38	257	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1202793339		P-0008651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	81	331	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																														NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88420315	88420315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	33	209	1	ENST00000360948.2:c.2371C>T	p.Arg791Trp	p.R791W	ENST00000360948	NM_001012338.2	791	Cgg/Tgg																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187516908	187516908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	133	369	0	ENST00000441802.2:c.13073C>T	p.Ala4358Val	p.A4358V	ENST00000441802	NM_005245.3	4358	gCc/gTc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0008651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	44	322	0	ENST00000257430.4:c.2805C>G	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taG																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152265596	152265596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	60	213	0	ENST00000206249.3:c.1049C>A	p.Ala350Glu	p.A350E	ENST00000206249	NM_000125.3	350	gCa/gAa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112154680	112154681	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	54	257	0	ENST00000257430.4:c.953dup	p.Leu318PhefsTer9	p.L318Ffs*9	ENST00000257430	NM_000038.5	317	-/T																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	48	486	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25965020	25965020	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	45	447	0	ENST00000435504.4:c.4186A>T	p.Thr1396Ser	p.T1396S	ENST00000435504		1396	Acg/Tcg																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227663063	227663063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	19	384	0	ENST00000305123.5:c.392G>T	p.Gly131Val	p.G131V	ENST00000305123	NM_005544.2	131	gGt/gTt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175871	112175871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	28	389	0	ENST00000257430.4:c.4580C>T	p.Pro1527Leu	p.P1527L	ENST00000257430	NM_000038.5	1527	cCa/cTa																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176562463	176562463	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	30	515	0	ENST00000439151.2:c.359G>C	p.Gly120Ala	p.G120A	ENST00000439151	NM_022455.4	120	gGt/gCt																																													NEWRECORD																																		
E2F3	1871	MSKCC	GRCh37	6	20481467	20481467	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	34	348	0	ENST00000346618.3:c.536A>G	p.Tyr179Cys	p.Y179C	ENST00000346618	NM_001949.4	179	tAt/tGt																																													NEWRECORD																																		
BMPR1A	657	MSKCC	GRCh37	10	88679195	88679195	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	14	276	0	ENST00000372037.3:c.1135G>C	p.Ala379Pro	p.A379P	ENST00000372037	NM_004329.2	379	Gct/Cct																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115112302	115112302	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			68	11	82	0	ENST00000257566.3:c.1438G>T	p.Ala480Ser	p.A480S	ENST00000257566	NM_016569.3	480	Gcg/Tcg																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110436013	110436013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	13	260	0	ENST00000375856.3:c.2388G>T	p.Arg796Ser	p.R796S	ENST00000375856	NM_003749.2	796	agG/agT																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95560464	95560464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	13	173	0	ENST00000343455.3:c.5125G>A	p.Asp1709Asn	p.D1709N	ENST00000343455	NM_177438.2	1709	Gat/Aat																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88483977	88483977	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	22	384	0	ENST00000360948.2:c.1593G>C	p.Gln531His	p.Q531H	ENST00000360948	NM_001012338.2	531	caG/caC																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59761283	59761283	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	39	566	0	ENST00000259008.2:c.3124G>T	p.Glu1042Ter	p.E1042*	ENST00000259008	NM_032043.2	1042	Gaa/Taa																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1207146	1207146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	47	346	0	ENST00000326873.7:c.234G>T	p.Lys78Asn	p.K78N	ENST00000326873	NM_000455.4	78	aaG/aaT																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10599888	10599888	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	38	603	0	ENST00000171111.5:c.1688A>G	p.Gln563Arg	p.Q563R	ENST00000171111	NM_203500.1	563	cAg/cGg																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10602446	10602446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	32	385	0	ENST00000171111.5:c.1132G>T	p.Gly378Cys	p.G378C	ENST00000171111	NM_203500.1	378	Ggc/Tgc																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9525015	9525015	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	23	422	0	ENST00000353224.5:c.1869+1G>A		p.X623_splice	ENST00000353224	NM_177990.2	623																																														NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47044901	47044901	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	36	221	0	ENST00000329236.7:c.1993G>T	p.Glu665Ter	p.E665*	ENST00000329236	NM_001204466.1	665	Gag/Tag																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70360537	70360537	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	54	320	0	ENST00000374080.3:c.6097A>G	p.Met2033Val	p.M2033V	ENST00000374080		2033	Atg/Gtg																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10599883	10599884	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	42	590	0	ENST00000171111.5:c.1692_1693insT	p.Arg565Ter	p.R565*	ENST00000171111	NM_203500.1	564	-/T																																													NEWRECORD																																		
JAK2	3717	MSKCC	GRCh37	9	5055702	5055703	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	28	391	0	ENST00000381652.3:c.972dup	p.Asp325Ter	p.D325*	ENST00000381652	NM_004972.3	324	att/aTtt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	220	543	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
IDH2	3418	MSKCC	GRCh37	15	90631838	90631838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913503		P-0013395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	240	592	0	ENST00000330062.3:c.515G>A	p.Arg172Lys	p.R172K	ENST00000330062	NM_002168.2	172	aGg/aAg																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15291527	15291527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			987	187	720	0	ENST00000263388.2:c.3107G>A	p.Arg1036Gln	p.R1036Q	ENST00000263388	NM_000435.2	1036	cGa/cAa																																													NEWRECORD																																		
MYD88	4615	MSKCC	GRCh37	3	38181926	38181926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	55	575	1	ENST00000396334.3:c.550G>A	p.Asp184Asn	p.D184N	ENST00000396334	NM_002468.4	184	Gac/Aac																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152332882	152332882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	224	607	0	ENST00000206249.3:c.1188G>A	p.Met396Ile	p.M396I	ENST00000206249	NM_000125.3	396	atG/atA																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101014	27101028	+	inframe_deletion	In_Frame_Del	DEL	CAATGCCTATCCTGC	CAATGCCTATCCTGC	-			P-0013395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	202	677	0	ENST00000324856.7:c.4298_4312del	p.Asn1433_Ala1437del	p.N1433_A1437del	ENST00000324856	NM_006015.4	1432	ggCAATGCCTATCCTGCc/ggc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0013784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	103	540	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0013784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	97	378	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	43	672	0	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2946355	2946355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	69	637	1	ENST00000396946.4:c.3382G>A	p.Val1128Ile	p.V1128I	ENST00000396946	NM_032415.4	1128	Gta/Ata																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	150001244	150001244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	185	622	0	ENST00000253339.5:c.2360G>A	p.Gly787Glu	p.G787E	ENST00000253339		787	gGg/gAg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398287	25398288	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTC			P-0013784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	157	489	0	ENST00000256078.4:c.29_31dup	p.Gly10dup	p.G10dup	ENST00000256078	NM_033360.2	10	gct/gGAGct																																													NEWRECORD																																		
NUP93	9688	MSKCC	GRCh37	16	56839482	56839482	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	70	841	0	ENST00000308159.5:c.427C>T	p.Arg143Ter	p.R143*	ENST00000308159	NM_014669.4	143	Cga/Tga																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72828308	72828308	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	153	928	0	ENST00000268489.5:c.8273T>G	p.Leu2758Arg	p.L2758R	ENST00000268489	NM_006885.3	2758	cTc/cGc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578220	7578220	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	109	709	0	ENST00000269305.4:c.629del	p.Asn210ThrfsTer37	p.N210Tfs*37	ENST00000269305	NM_001126112.2	210	aAc/ac																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180041175	180041175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	106	542	0	ENST00000261937.6:c.3224G>A	p.Arg1075Gln	p.R1075Q	ENST00000261937	NM_182925.4	1075	cGg/cAg																																													NEWRECORD																																		
FYN	2534	MSKCC	GRCh37	6	112017620	112017620	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	52	815	0	ENST00000368678.4:c.893T>G	p.Leu298Arg	p.L298R	ENST00000368678		298	cTt/cGt																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47040969	47040970	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCT			P-0013784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	104	588	0	ENST00000329236.7:c.1267_1270dup	p.Gly424AlafsTer17	p.G424Afs*17	ENST00000329236	NM_001204466.1	422	cag/caGCCTg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004010-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			117	12	134	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004010-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	45	220	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25380277	25380277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004010-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			136	13	384	0	ENST00000256078.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	61	Caa/Aaa																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372337	55372337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004010-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			70	13	376	1	ENST00000297316.4:c.1027C>T	p.Arg343Trp	p.R343W	ENST00000297316	NM_022454.3	343	Cgg/Tgg																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153247369	153247369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004010-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			158	19	211	0	ENST00000281708.4:c.1433C>T	p.Ser478Phe	p.S478F	ENST00000281708	NM_033632.3	478	tCt/tTt																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153250822	153250822	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0004010-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	31	506	0	ENST00000281708.4:c.1236+2T>C		p.X412_splice	ENST00000281708	NM_033632.3	412																																														NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98215772	98215772	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004010-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			198	21	289	0	ENST00000331920.6:c.3437A>G	p.Asp1146Gly	p.D1146G	ENST00000331920	NM_000264.3	1146	gAc/gGc																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004010-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	14	428	0	ENST00000342988.3:c.1610A>C	p.Asp537Ala	p.D537A	ENST00000342988	NM_005359.5	537	gAc/gCc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	197	486	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11552822		P-0010980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	100	344	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1222987	1222987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	78	400	1	ENST00000326873.7:c.924G>T	p.Trp308Cys	p.W308C	ENST00000326873	NM_000455.4	308	tgG/tgT																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11098601	11098601	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0010980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	131	518	0	ENST00000344626.4:c.1118+1G>T		p.X373_splice	ENST00000344626	NM_003072.3	373																																														NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47164513	47164513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	156	610	0	ENST00000409792.3:c.1613G>T	p.Gly538Val	p.G538V	ENST00000409792	NM_014159.6	538	gGa/gTa																																													NEWRECORD																																		
DAXX	1616	MSKCC	GRCh37	6	33288645	33288645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	171	364	0	ENST00000374542.5:c.907G>A	p.Gly303Ser	p.G303S	ENST00000374542	NM_001141970.1	303	Ggc/Agc																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10602737	10602737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	185	602	0	ENST00000171111.5:c.841C>A	p.Leu281Met	p.L281M	ENST00000171111	NM_203500.1	281	Ctg/Atg																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411922	63411922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1410	282	1187	1	ENST00000330258.3:c.1245G>T	p.Met415Ile	p.M415I	ENST00000330258	NM_152424.3	415	atG/atT																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72845854	72845855	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1266	266	957	0	ENST00000268489.5:c.3612dup	p.Pro1205SerfsTer11	p.P1205Sfs*11	ENST00000268489	NM_006885.3	1204	-/T																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	65	457	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73346338	73346338	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	51	370	0	ENST00000377767.4:c.1462G>C	p.Asp488His	p.D488H	ENST00000377767	NM_014953.3	488	Gat/Cat																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1207202	1207203	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	TT			P-0014234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	60	687	0	ENST00000326873.7:c.290_290+1insTT	p.Lys97AsnfsTer7	p.K97Nfs*7	ENST00000326873	NM_000455.4	97	aag/aaTTg																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1221319	1221320	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	58	598	0	ENST00000326873.7:c.842_843insT	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	281	ccg/ccTg																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76919028	76919029	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	283	412	0	ENST00000373344.5:c.3962dup	p.Asn1321LysfsTer3	p.N1321Kfs*3	ENST00000373344	NM_000489.3	1321	aat/aaAt																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	16	226	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43596014	43596014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	120	397	1	ENST00000355710.3:c.181G>A	p.Glu61Lys	p.E61K	ENST00000355710	NM_020975.4	61	Gag/Aag																																													NEWRECORD																																		
PHOX2B	8929	MSKCC	GRCh37	4	41748290	41748290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	48	340	1	ENST00000226382.2:c.479C>T	p.Ala160Val	p.A160V	ENST00000226382	NM_003924.3	160	gCg/gTg																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225370756	225370756	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1116	79	435	0	ENST00000264414.4:c.1123G>C	p.Glu375Gln	p.E375Q	ENST00000264414	NM_003590.4	375	Gag/Cag																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47006898	47006898	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	106	177	0	ENST00000329236.7:c.17+1G>T		p.X6_splice	ENST00000329236	NM_001204466.1	6																																														NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10599904	10599904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	261	467	0	ENST00000171111.5:c.1672G>A	p.Gly558Arg	p.G558R	ENST00000171111	NM_203500.1	558	Ggg/Agg																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11308012	11308012	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	124	472	0	ENST00000361445.4:c.980C>G	p.Ser327Ter	p.S327*	ENST00000361445	NM_004958.3	327	tCa/tGa																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27057850	27057850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1080	266	605	0	ENST00000324856.7:c.1558C>T	p.Gln520Ter	p.Q520*	ENST00000324856	NM_006015.4	520	Cag/Tag																																													NEWRECORD																																		
NFE2L2	4780	MSKCC	GRCh37	2	178095755	178095755	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1213	94	450	0	ENST00000397062.3:c.1576G>C	p.Glu526Gln	p.E526Q	ENST00000397062	NM_006164.4	526	Gag/Cag																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225342976	225342976	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1624	156	672	0	ENST00000264414.4:c.2116G>T	p.Ala706Ser	p.A706S	ENST00000264414	NM_003590.4	706	Gct/Tct																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227661011	227661011	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	180	330	0	ENST00000305123.5:c.2444G>T	p.Ser815Ile	p.S815I	ENST00000305123	NM_005544.2	815	aGc/aTc																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134644679	134644679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	188	335	0	ENST00000398015.3:c.80C>A	p.Thr27Lys	p.T27K	ENST00000398015	NM_004441.4	27	aCg/aAg																																													NEWRECORD																																		
KIT	3815	MSKCC	GRCh37	4	55573447	55573447	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	87	241	0	ENST00000288135.5:c.1109A>T	p.Asn370Ile	p.N370I	ENST00000288135	NM_000222.2	370	aAt/aTt																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149513266	149513266	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	63	420	1	ENST00000261799.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000261799	NM_002609.3	273	Cgc/Agc																																													NEWRECORD																																		
HIST1H3G	8355	MSKCC	GRCh37	6	26271234	26271234	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1827	239	799	1	ENST00000305910.3:c.379C>A	p.Leu127Ile	p.L127I	ENST00000305910	NM_003534.2	127	Ctc/Atc																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32163282	32163282	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1539	85	566	0	ENST00000375023.3:c.5944C>G	p.Gln1982Glu	p.Q1982E	ENST00000375023	NM_004557.3	1982	Caa/Gaa																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	93969119	93969119	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1320	121	585	0	ENST00000369303.4:c.1877A>T	p.Lys626Met	p.K626M	ENST00000369303	NM_004440.3	626	aAg/aTg																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81334783	81334783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	274	454	0	ENST00000222390.5:c.1933C>A	p.His645Asn	p.H645N	ENST00000222390	NM_000601.4	645	Cat/Aat																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971093	21971093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	67	161	0	ENST00000304494.5:c.265G>T	p.Gly89Cys	p.G89C	ENST00000304494	NM_000077.4	89	Ggc/Tgc																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43604526	43604526	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	163	417	0	ENST00000355710.3:c.1111C>A	p.Gln371Lys	p.Q371K	ENST00000355710	NM_020975.4	371	Cag/Aag																																													NEWRECORD																																		
FGF4	2249	MSKCC	GRCh37	11	69589519	69589519	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	53	88	0	ENST00000168712.1:c.334C>A	p.Arg112Ser	p.R112S	ENST00000168712	NM_002007.2	112	Cgc/Agc																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49448535	49448535	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	77	311	0	ENST00000301067.7:c.177-1G>T		p.X59_splice	ENST00000301067	NM_003482.3	59																																														NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29546119	29546119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	106	316	0	ENST00000358273.4:c.1624G>A	p.Ala542Thr	p.A542T	ENST00000358273	NM_001042492.2	542	Gct/Act																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37627376	37627376	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1327	135	538	1	ENST00000447079.4:c.1291G>T	p.Glu431Ter	p.E431*	ENST00000447079	NM_015083.1	431	Gag/Tag																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5214599	5214599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	54	442	2	ENST00000357368.4:c.4467G>A	p.Met1489Ile	p.M1489I	ENST00000357368	NM_002850.3	1489	atG/atA																																													NEWRECORD																																		
SH2D1A	4068	MSKCC	GRCh37	X	123504078	123504078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	50	230	0	ENST00000371139.4:c.254C>T	p.Ser85Leu	p.S85L	ENST00000371139	NM_001114937.2	85	tCa/tTa																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117641138	117641139	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1209	78	568	0	ENST00000368508.3:c.5832_5833insT	p.Leu1945SerfsTer17	p.L1945Sfs*17	ENST00000368508	NM_002944.2	1944	-/T																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180030348	180030362	+	inframe_deletion	In_Frame_Del	DEL	GTGTGCCCTGGTCAC	GTGTGCCCTGGTCAC	-			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	57	513	0	ENST00000261937.6:c.3922_3936del	p.Val1308_His1312del	p.V1308_H1312del	ENST00000261937	NM_182925.4	1308	GTGACCAGGGCACAC/-																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577137	7577137	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	275	446	0	ENST00000269305.4:c.801del	p.Asn268ThrfsTer77	p.N268Tfs*77	ENST00000269305	NM_001126112.2	267	cgG/cg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			459	250	495	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			412	32	326	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587777893		P-0002235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			702	89	386	0	ENST00000361445.4:c.5930C>A	p.Thr1977Lys	p.T1977K	ENST00000361445	NM_004958.3	1977	aCa/aAa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174144	112174144	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0002235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	234	501	0	ENST00000257430.4:c.2853T>A	p.Tyr951Ter	p.Y951*	ENST00000257430	NM_000038.5	951	taT/taA																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577093	7577093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	112	544	0	ENST00000269305.4:c.845G>C	p.Arg282Pro	p.R282P	ENST00000269305	NM_001126112.2	282	cGg/cCg																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717672	89717673	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GACGGGAAGACAAGTTCATGTACTTT			P-0004903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	52	412	0	ENST00000371953.3:c.700_725dup	p.Glu242AspfsTer23	p.E242Dfs*23	ENST00000371953	NM_000314.4	233	cga/cGACGGGAAGACAAGTTCATGTACTTTga																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	148	428	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0009837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	58	434	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47637339	47637339	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1285	128	615	0	ENST00000233146.2:c.473A>G	p.Gln158Arg	p.Q158R	ENST00000233146	NM_000251.2	158	cAg/cGg																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	427383	427383	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	93	497	0	ENST00000399788.2:c.2786G>T	p.Gly929Val	p.G929V	ENST00000399788	NM_001042603.1	929	gGg/gTg																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47041373	47041373	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1235	117	684	1	ENST00000329236.7:c.1483C>T	p.Gln495Ter	p.Q495*	ENST00000329236	NM_001204466.1	495	Cag/Tag																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31024406	31024407	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0009837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	86	493	0	ENST00000375687.4:c.3892_3893insGA	p.Thr1298ArgfsTer153	p.T1298Rfs*153	ENST00000375687	NM_015338.5	1297	-/AG																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			119	150	157	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519925		P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			240	206	247	0	ENST00000263967.3:c.1357G>C	p.Glu453Gln	p.E453Q	ENST00000263967	NM_006218.2	453	Gaa/Caa																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			140	301	372	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56161221	56161221	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781300314		P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	150	348	1	ENST00000399503.3:c.1090C>T	p.Arg364Trp	p.R364W	ENST00000399503	NM_005921.1	364	Cgg/Tgg																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128829321	128829321	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			140	86	153	0	ENST00000249373.3:c.329C>T	p.Ser110Leu	p.S110L	ENST00000249373	NM_005631.4	110	tCg/tTg																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151879670	151879670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	94	114	1	ENST00000262189.6:c.5275C>T	p.Gln1759Ter	p.Q1759*	ENST00000262189	NM_170606.2	1759	Cag/Tag																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007799	45007799	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	85	231	0	ENST00000558401.1:c.246C>G	p.Phe82Leu	p.F82L	ENST00000558401	NM_004048.2	82	ttC/ttG																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645516	67645516	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			85	37	94	0	ENST00000264010.4:c.781G>A	p.Gly261Ser	p.G261S	ENST00000264010	NM_006565.3	261	Ggt/Agt																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16256794	16256795	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			109	118	264	0	ENST00000375759.3:c.4060_4061del	p.Ser1354PhefsTer7	p.S1354Ffs*7	ENST00000375759	NM_015001.2	1353	gtGAgt/gtgt																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971199	21971200	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	ATCA			P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			48	44	75	0	ENST00000361570.3:c.321_324dup	p.Asp109Ter	p.D109*	ENST00000361570	NM_058195.3	108	-/TGAT																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061530	38061556	+	inframe_deletion	In_Frame_Del	DEL	CGCGCGGCTGCGGCCCAGGTTGGACGG	CGCGCGGCTGCGGCCCAGGTTGGACGG	-			P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			104	36	95	0	ENST00000250448.2:c.433_459del	p.Pro145_Ala153del	p.P145_A153del	ENST00000250448	NM_004496.3	145	CCGTCCAACCTGGGCCGCAGCCGCGCG/-																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3788618	3788625	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGGCAA	GGAGGCAA	-			P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	98	325	0	ENST00000262367.5:c.4329_4336del	p.Cys1444HisfsTer6	p.C1444Hfs*6	ENST00000262367	NM_004380.2	1443	cgTTGCCTCCgc/cggc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	88	341	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0014738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	147	674	1	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591966	48591967	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	35	216	0	ENST00000342988.3:c.1130dup	p.Arg378GlufsTer15	p.R378Efs*15	ENST00000342988	NM_005359.5	377	gag/gAag																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0009627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	303	480	1	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																													NEWRECORD																																		
NF2	4771	MSKCC	GRCh37	22	30051658	30051658	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	166	408	0	ENST00000338641.4:c.592C>T	p.Arg198Ter	p.R198*	ENST00000338641	NM_000268.3	198	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112176051	112176051	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	116	380	0	ENST00000257430.4:c.4760C>A	p.Ser1587Ter	p.S1587*	ENST00000257430	NM_000038.5	1587	tCa/tAa																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78919565	78919565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	77	272	0	ENST00000306801.3:c.3124G>A	p.Asp1042Asn	p.D1042N	ENST00000306801	NM_020761.2	1042	Gac/Aac																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47039435	47039435	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0009627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	128	434	0	ENST00000329236.7:c.827T>A	p.Ile276Asn	p.I276N	ENST00000329236	NM_001204466.1	276	aTc/aAc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115859	8115859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1303	213	596	0	ENST00000346208.3:c.1205C>T	p.Ser402Phe	p.S402F	ENST00000346208		402	tCc/tTc																																													NEWRECORD																																		
YAP1	10413	MSKCC	GRCh37	11	102056791	102056791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	211	420	0	ENST00000282441.5:c.731G>A	p.Gly244Glu	p.G244E	ENST00000282441	NM_001130145.2	244	gGa/gAa																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151878354	151878355	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	337	465	0	ENST00000262189.6:c.6590dup	p.Arg2198GlufsTer4	p.R2198Efs*4	ENST00000262189	NM_170606.2	2197	cag/caAg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0004866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	67	217	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0004866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	57	158	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0004866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	60	273	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28883065	28883065	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0004866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	48	181	0	ENST00000282397.4:c.3636-1G>C		p.X1212_splice	ENST00000282397	NM_002019.4	1212																																														NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7572986	7572986	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	30	147	0	ENST00000269305.4:c.1123C>A	p.Gln375Lys	p.Q375K	ENST00000269305	NM_001126112.2	375	Cag/Aag																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0014928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	62	361	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																													NEWRECORD																																		
INHBA	3624	MSKCC	GRCh37	7	41730075	41730075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	82	456	0	ENST00000242208.4:c.454C>T	p.Arg152Cys	p.R152C	ENST00000242208	NM_002192.2	152	Cgt/Tgt																																													NEWRECORD																																		
MAPK3	5595	MSKCC	GRCh37	16	30128266	30128266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	96	712	0	ENST00000263025.4:c.966G>T	p.Glu322Asp	p.E322D	ENST00000263025	NM_002746.2	322	gaG/gaT																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67070575	67070575	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	57	282	0	ENST00000412916.2:c.199C>T	p.Gln67Ter	p.Q67*	ENST00000412916		67	Cag/Tag																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56178340	56178341	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	57	410	0	ENST00000399503.3:c.3315dup	p.Ile1106TyrfsTer4	p.I1106Yfs*4	ENST00000399503	NM_005921.1	1105	gtt/gTtt																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56178379	56178379	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	72	400	0	ENST00000399503.3:c.3352G>T	p.Glu1118Ter	p.E1118*	ENST00000399503	NM_005921.1	1118	Gag/Tag																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0005036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	211	319	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151859305	151859305	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0005036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	336	497	0	ENST00000262189.6:c.11357C>G	p.Ser3786Ter	p.S3786*	ENST00000262189	NM_170606.2	3786	tCa/tGa																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72991331	72991331	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1250	229	750	0	ENST00000268489.5:c.2714C>G	p.Ala905Gly	p.A905G	ENST00000268489	NM_006885.3	905	gCt/gGt																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56160677	56160678	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	410	610	0	ENST00000399503.3:c.953dup	p.Leu318PhefsTer8	p.L318Ffs*8	ENST00000399503	NM_005921.1	317	-/T																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56152576	56152577	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0005036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	279	503	0	ENST00000399503.3:c.633+1dup		p.V211fs	ENST00000399503	NM_005921.1	211	gtg/gtGg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0006468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	533	366	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0006468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	256	262	0	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23647631	23647631	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	198	265	0	ENST00000261584.4:c.236A>T	p.Tyr79Phe	p.Y79F	ENST00000261584	NM_024675.3	79	tAt/tTt																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29687665	29687665	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	315	351	0	ENST00000358273.4:c.8321C>G	p.Ala2774Gly	p.A2774G	ENST00000358273	NM_001042492.2	2774	gCc/gGc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175345	112175346	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	155	223	0	ENST00000257430.4:c.4056dup	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1352	gtt/gTtt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0013387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	357	798	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0013387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	387	766	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162742008	162742008	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	370	777	0	ENST00000367921.3:c.1699G>C	p.Glu567Gln	p.E567Q	ENST00000367921	NM_006182.2	567	Gag/Cag																																													NEWRECORD																																		
CCND3	896	MSKCC	GRCh37	6	41905105	41905105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	310	529	0	ENST00000372991.4:c.442C>G	p.Leu148Val	p.L148V	ENST00000372991	NM_001760.3	148	Ctc/Gtc																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63553946	63553946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	381	774	0	ENST00000307078.5:c.793G>A	p.Glu265Lys	p.E265K	ENST00000307078	NM_004655.3	265	Gaa/Aaa																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41420060	41420060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	148	610	2	ENST00000373198.4:c.261G>T	p.Lys87Asn	p.K87N	ENST00000373198	NM_133170.3	87	aaG/aaT																																													NEWRECORD																																		
CRKL	1399	MSKCC	GRCh37	22	21272506	21272506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	386	776	1	ENST00000354336.3:c.284C>A	p.Thr95Asn	p.T95N	ENST00000354336	NM_005207.3	95	aCc/aAc																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46233193	46233219	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGTTCCAGTCATCAAATGTTATCTG	CAAGTTCCAGTCATCAAATGTTATCTG	AGAT			P-0013387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	328	740	0	ENST00000334344.6:c.1412_1438delinsAGAT	p.Pro471GlnfsTer4	p.P471Qfs*4	ENST00000334344	NM_152641.2	471	cCAAGTTCCAGTCATCAAATGTTATCTGaa/cAGATaa																																													NEWRECORD																																		
ETV1	2115	MSKCC	GRCh37	7	13940362	13940362	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0011363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	101	308	0	ENST00000405192.2:c.1143+1G>A		p.X381_splice	ENST00000405192	NM_001163147.1	381																																														NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32907240	32907241	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	71	384	0	ENST00000380152.3:c.1626dup	p.His543ThrfsTer17	p.H543Tfs*17	ENST00000380152		542	ata/atAa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	349	230	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0009341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	535	409	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	11998898	11998898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	338	325	1	ENST00000353533.5:c.400C>T	p.Arg134Trp	p.R134W	ENST00000353533	NM_003010.3	134	Cgg/Tgg																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118344954	118344955	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	215	325	0	ENST00000534358.1:c.3086dup	p.Ala1030GlyfsTer9	p.A1030Gfs*9	ENST00000534358	NM_005933.3	1027	cta/ctAa																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008945-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1463	433	548	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56155725	56155726	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0008945-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	161	387	0	ENST00000399503.3:c.819_820delAG	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	273	AGa/a																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0008945-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	219	512	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																														NEWRECORD																																		
IRF4	3662	MSKCC	GRCh37	6	394866	394866	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs144593192		P-0008945-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	22	405	0	ENST00000380956.4:c.262C>G	p.Pro88Ala	p.P88A	ENST00000380956	NM_001195286.1	88	Ccg/Gcg																																													NEWRECORD																																		
ERRFI1	54206	MSKCC	GRCh37	1	8075612	8075612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	239	1470	1	ENST00000377482.5:c.68G>A	p.Gly23Asp	p.G23D	ENST00000377482	NM_018948.3	23	gGc/gAc																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16261038	16261038	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144525015		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	86	961	5	ENST00000375759.3:c.8303C>T	p.Ala2768Val	p.A2768V	ENST00000375759	NM_015001.2	2768	gCg/gTg																																													NEWRECORD																																		
NEGR1	257194	MSKCC	GRCh37	1	72076745	72076745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1171	219	1613	1	ENST00000357731.5:c.752C>T	p.Pro251Leu	p.P251L	ENST00000357731	NM_173808.2	251	cCg/cTg																																													NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115251164	115251164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	150	1322	2	ENST00000369535.4:c.562G>A	p.Val188Met	p.V188M	ENST00000369535	NM_002524.4	188	Gtg/Atg																																													NEWRECORD																																		
HIST3H3	8290	MSKCC	GRCh37	1	228612819	228612819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	157	1845	7	ENST00000366696.1:c.208C>T	p.Arg70Trp	p.R70W	ENST00000366696	NM_003493.2	70	Cgg/Tgg																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25976476	25976476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	175	1132	5	ENST00000435504.4:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000435504		357	Cga/Tga																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25982356	25982356	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	173	797	0	ENST00000435504.4:c.934C>T	p.Arg312Ter	p.R312*	ENST00000435504		312	Cga/Tga																																													NEWRECORD																																		
ERCC3	2071	MSKCC	GRCh37	2	128047007	128047007	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	154	1435	1	ENST00000285398.2:c.728A>T	p.Asp243Val	p.D243V	ENST00000285398	NM_000122.1	243	gAc/gTc																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104893810		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	180	1067	1	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41268762	41268762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	158	1195	2	ENST00000349496.5:c.1000G>A	p.Glu334Lys	p.E334K	ENST00000349496	NM_001904.3	334	Gaa/Aaa																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41277275	41277275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	203	1119	3	ENST00000349496.5:c.1744C>T	p.Arg582Trp	p.R582W	ENST00000349496	NM_001904.3	582	Cgg/Tgg																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89390994	89390994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	185	1237	0	ENST00000336596.2:c.1060C>T	p.Arg354Trp	p.R354W	ENST00000336596	NM_005233.5	354	Cgg/Tgg																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138374293	138374293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	191	1258	1	ENST00000289153.2:c.3151G>A	p.Glu1051Lys	p.E1051K	ENST00000289153	NM_006219.2	1051	Gaa/Aaa																																													NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1808338	1808338	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	113	1260	0	ENST00000260795.2:c.2096C>A	p.Pro699His	p.P699H	ENST00000260795		699	cCt/cAt																																													NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1808590	1808590	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	93	1215	0	ENST00000260795.2:c.2203C>A	p.Pro735Thr	p.P735T	ENST00000260795		735	Ccc/Acc																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55964866	55964866	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	180	1107	3	ENST00000263923.4:c.2371C>T	p.Arg791Trp	p.R791W	ENST00000263923	NM_002253.2	791	Cgg/Tgg																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67591125	67591125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	207	922	0	ENST00000274335.5:c.1718T>C	p.Leu573Pro	p.L573P	ENST00000274335		573	cTg/cCg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1138	238	1241	6	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173495	112173495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147655929		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	180	1044	0	ENST00000257430.4:c.2204C>T	p.Ala735Val	p.A735V	ENST00000257430	NM_000038.5	735	gCg/gTg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	204	1424	2	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																													NEWRECORD																																		
CSF1R	1436	MSKCC	GRCh37	5	149450031	149450031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	68	1007	1	ENST00000286301.3:c.1186C>T	p.Leu396Phe	p.L396F	ENST00000286301	NM_005211.3	396	Ctc/Ttc																																													NEWRECORD																																		
CSF1R	1436	MSKCC	GRCh37	5	149457763	149457763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	58	873	0	ENST00000286301.3:c.641G>A	p.Arg214Gln	p.R214Q	ENST00000286301	NM_005211.3	214	cGg/cAg																																													NEWRECORD																																		
HIST1H1C	3006	MSKCC	GRCh37	6	26056632	26056632	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	50	288	0	ENST00000343677.2:c.25C>G	p.Pro9Ala	p.P9A	ENST00000343677	NM_005319.3	9	Ccc/Gcc																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32163675	32163675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	51	676	0	ENST00000375023.3:c.5551C>T	p.Pro1851Ser	p.P1851S	ENST00000375023	NM_004557.3	1851	Ccc/Tcc																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117681061	117681061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	222	1194	0	ENST00000368508.3:c.3559G>A	p.Val1187Ile	p.V1187I	ENST00000368508	NM_002944.2	1187	Gtt/Att																																													NEWRECORD																																		
TNFAIP3	7128	MSKCC	GRCh37	6	138202364	138202364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	97	565	0	ENST00000237289.4:c.2281C>T	p.Arg761Cys	p.R761C	ENST00000237289	NM_001270507.1	761	Cgt/Tgt																																													NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50467663	50467663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	119	1057	0	ENST00000331340.3:c.898G>A	p.Glu300Lys	p.E300K	ENST00000331340	NM_006060.4	300	Gag/Aag																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8485917	8485917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	191	1402	4	ENST00000356435.5:c.2900C>T	p.Pro967Leu	p.P967L	ENST00000356435		967	cCg/cTg																																													NEWRECORD																																		
CDKN2B	1030	MSKCC	GRCh37	9	22006026	22006026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	218	1115	0	ENST00000276925.6:c.377G>A	p.Arg126His	p.R126H	ENST00000276925	NM_004936.3	126	cGc/cAc																																													NEWRECORD																																		
EGFL7	51162	MSKCC	GRCh37	9	139563095	139563095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	36	1109	4	ENST00000308874.7:c.167G>A	p.Cys56Tyr	p.C56Y	ENST00000308874		56	tGc/tAc																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63851671	63851671	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	72	894	2	ENST00000279873.7:c.2449A>G	p.Arg817Gly	p.R817G	ENST00000279873	NM_032199.2	817	Agg/Ggg																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	167	1040	3	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																													NEWRECORD																																		
FGFR2	2263	MSKCC	GRCh37	10	123310860	123310860	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147987917		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	257	1164	5	ENST00000358487.5:c.568C>T	p.Arg190Trp	p.R190W	ENST00000358487	NM_000141.4	190	Cgg/Tgg																																													NEWRECORD																																		
WT1	7490	MSKCC	GRCh37	11	32410618	32410618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	138	1117	1	ENST00000332351.3:c.1540C>A	p.Gln514Lys	p.Q514K	ENST00000332351	NM_024426.4	514	Cag/Aag																																													NEWRECORD																																		
ETV6	2120	MSKCC	GRCh37	12	11905418	11905418	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	102	907	0	ENST00000396373.4:c.68C>A	p.Pro23Gln	p.P23Q	ENST00000396373	NM_001987.4	23	cCa/cAa																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49434315	49434315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	100	1567	2	ENST00000301067.7:c.7238C>T	p.Ala2413Val	p.A2413V	ENST00000301067	NM_003482.3	2413	gCc/gTc																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49437175	49437175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	90	1279	3	ENST00000301067.7:c.5504G>A	p.Arg1835His	p.R1835H	ENST00000301067	NM_003482.3	1835	cGt/cAt																																													NEWRECORD																																		
MDM2	4193	MSKCC	GRCh37	12	69233149	69233149	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	179	1369	0	ENST00000462284.1:c.1014A>C	p.Glu338Asp	p.E338D	ENST00000462284	NM_002392.5	338	gaA/gaC																																													NEWRECORD																																		
LATS2	26524	MSKCC	GRCh37	13	21562345	21562345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	121	788	2	ENST00000382592.4:c.1574G>A	p.Arg525His	p.R525H	ENST00000382592	NM_014572.2	525	cGc/cAc																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42052629	42052629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	455	1678	4	ENST00000219905.7:c.7300C>T	p.Arg2434Trp	p.R2434W	ENST00000219905	NM_001164273.1	2434	Cgg/Tgg																																													NEWRECORD																																		
MAP2K1	5604	MSKCC	GRCh37	15	66727451	66727451	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519729		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	209	1371	0	ENST00000307102.5:c.167A>C	p.Gln56Pro	p.Q56P	ENST00000307102	NM_002755.3	56	cAg/cCg																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23641218	23641218	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	96	985	2	ENST00000261584.4:c.2257C>T	p.Arg753Ter	p.R753*	ENST00000261584	NM_024675.3	753	Cga/Tga																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68835630	68835630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	136	1372	3	ENST00000261769.5:c.221G>A	p.Arg74Gln	p.R74Q	ENST00000261769	NM_004360.3	74	cGa/cAa																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89838087	89838087	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	62	1193	0	ENST00000389301.3:c.2150T>C	p.Met717Thr	p.M717T	ENST00000389301	NM_000135.2	717	aTg/aCg																																													NEWRECORD																																		
RARA	5914	MSKCC	GRCh37	17	38510723	38510723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	31	798	1	ENST00000254066.5:c.977C>T	p.Thr326Met	p.T326M	ENST00000254066	NM_000964.3	326	aCg/aTg																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56440757	56440757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	69	817	1	ENST00000407977.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000407977		154	cCg/cTg																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78811795	78811795	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	103	979	0	ENST00000306801.3:c.1210C>T	p.Arg404Trp	p.R404W	ENST00000306801	NM_020761.2	404	Cgg/Tgg																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	197	1158	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5222982	5222982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201435229		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	66	914	1	ENST00000357368.4:c.2821G>A	p.Ala941Thr	p.A941T	ENST00000357368	NM_002850.3	941	Gcc/Acc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5229502	5229502	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	18	341	0	ENST00000357368.4:c.2349G>T	p.Gln783His	p.Q783H	ENST00000357368	NM_002850.3	783	caG/caT																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5231554	5231554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	38	730	1	ENST00000357368.4:c.1922C>T	p.Pro641Leu	p.P641L	ENST00000357368	NM_002850.3	641	cCg/cTg																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11152145	11152145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	116	1308	2	ENST00000344626.4:c.4333C>T	p.Arg1445Trp	p.R1445W	ENST00000344626	NM_003072.3	1445	Cgg/Tgg																																													NEWRECORD																																		
MEF2B	100271849	MSKCC	GRCh37	19	19260058	19260058	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143400241		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	72	1265	3	ENST00000162023.5:c.235C>T	p.Arg79Cys	p.R79C	ENST00000162023		79	Cgc/Tgc																																													NEWRECORD																																		
AKT2	208	MSKCC	GRCh37	19	40762839	40762839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	47	898	3	ENST00000392038.2:c.169G>A	p.Val57Ile	p.V57I	ENST00000392038	NM_001626.4	57	Gta/Ata																																													NEWRECORD																																		
SRC	6714	MSKCC	GRCh37	20	36028617	36028617	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	63	1177	0	ENST00000358208.4:c.959T>C	p.Leu320Pro	p.L320P	ENST00000358208		320	cTg/cCg																																													NEWRECORD																																		
TOP1	7150	MSKCC	GRCh37	20	39708802	39708802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	144	892	2	ENST00000361337.2:c.413G>A	p.Arg138Lys	p.R138K	ENST00000361337	NM_003286.2	138	aGa/aAa																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40739099	40739099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	83	1163	3	ENST00000373198.4:c.3185G>A	p.Arg1062His	p.R1062H	ENST00000373198	NM_133170.3	1062	cGc/cAc																																													NEWRECORD																																		
NCOA3	8202	MSKCC	GRCh37	20	46256696	46256696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1313	245	1794	1	ENST00000371998.3:c.752G>A	p.Arg251His	p.R251H	ENST00000371998		251	cGc/cAc																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41525915	41525915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	149	1040	0	ENST00000263253.7:c.1190G>A	p.Arg397Gln	p.R397Q	ENST00000263253	NM_001429.3	397	cGa/cAa																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39911597	39911597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	163	701	5	ENST00000378444.4:c.5033G>A	p.Arg1678His	p.R1678H	ENST00000378444	NM_001123385.1	1678	cGc/cAc																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39931619	39931619	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	128	685	0	ENST00000378444.4:c.2980G>T	p.Glu994Ter	p.E994*	ENST00000378444	NM_001123385.1	994	Gag/Tag																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	202	874	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	174	1262	7	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	70	992	9	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	139	1371	6	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27088787	27088788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	89	1186	1	ENST00000324856.7:c.2402dupG	p.Gln802SerfsTer15	p.Q802Sfs*15	ENST00000324856	NM_006015.4	799	cag/caGg																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48027926	48027927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	185	1127	1	ENST00000234420.5:c.2805dup	p.Asp936Ter	p.D936*	ENST00000234420	NM_000179.2	935	tct/tcTt																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	72	731	5	ENST00000447079.4:c.4382delG	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg																																													NEWRECORD																																		
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	177	908	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178948136	178948136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			427	117	451	0	ENST00000263967.3:c.2908G>A	p.Glu970Lys	p.E970K	ENST00000263967	NM_006218.2	970	Gaa/Aaa																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30673008	30673008	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	49	307	0	ENST00000376406.3:c.3952T>G	p.Ser1318Ala	p.S1318A	ENST00000376406	NM_014641.2	1318	Tct/Gct																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151875031	151875031	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			508	80	524	0	ENST00000262189.6:c.7507C>T	p.Gln2503Ter	p.Q2503*	ENST00000262189	NM_170606.2	2503	Cag/Tag																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18762554	18762554	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			539	116	483	0	ENST00000266497.5:c.4050G>C	p.Met1350Ile	p.M1350I	ENST00000266497		1350	atG/atC																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2130306	2130306	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	134	795	0	ENST00000219476.3:c.3538A>G	p.Lys1180Glu	p.K1180E	ENST00000219476	NM_000548.3	1180	Aag/Gag																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3820773	3820773	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			383	91	693	0	ENST00000262367.5:c.2678C>G	p.Ser893Trp	p.S893W	ENST00000262367	NM_004380.2	893	tCg/tGg																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56170882	56170890	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCTTATT	CTGCTTATT	AATGGAA			P-0002915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			434	47	592	0	ENST00000399503.3:c.1710_1718delinsAATGGAA	p.Cys571MetfsTer4	p.C571Mfs*4	ENST00000399503	NM_005921.1	570	ggCTGCTTATTt/ggAATGGAAt																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111510	8111511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			622	177	768	0	ENST00000346208.3:c.998dup	p.Asn333LysfsTer19	p.N333Kfs*19	ENST00000346208		332	-/A																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41245366	41245367	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0002915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			562	156	803	0	ENST00000357654.3:c.2181_2182del	p.Glu729ArgfsTer10	p.E729Rfs*10	ENST00000357654	NM_007294.3	727	ccAAga/ccga																																													NEWRECORD																																		
RAF1	5894	MSKCC	GRCh37	3	12633229	12633229	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	122	301	0	ENST00000251849.4:c.1171A>T	p.Arg391Trp	p.R391W	ENST00000251849	NM_002880.3	391	Agg/Tgg																																													NEWRECORD																																		
FYN	2534	MSKCC	GRCh37	6	112041070	112041070	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1068	169	441	2	ENST00000368678.4:c.185C>G	p.Thr62Ser	p.T62S	ENST00000368678		62	aCc/aGc																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135778125	135778135	+	frameshift_variant	Frame_Shift_Del	DEL	CTAACCTTCCA	CTAACCTTCCA	T			P-0003146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	84	315	0	ENST00000298552.3:c.2248_2258delinsA	p.Trp750IlefsTer20	p.W750Ifs*20	ENST00000298552	NM_001162426.1	750	TGGAAGGTTAGt/At																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135797242	135797242	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AT			P-0003146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	85	294	0	ENST00000298552.3:c.627delinsAT	p.Met209IlefsTer2	p.M209Ifs*2	ENST00000298552	NM_001162426.1	209	atG/atAT																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	244	278	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
TNFRSF14	8764	MSKCC	GRCh37	1	2491373	2491373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	48	425	0	ENST00000355716.4:c.416G>A	p.Arg139His	p.R139H	ENST00000355716	NM_003820.2	139	cGc/cAc																																													NEWRECORD																																		
BTK	695	MSKCC	GRCh37	X	100625055	100625055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	222	519	0	ENST00000308731.7:c.322G>A	p.Glu108Lys	p.E108K	ENST00000308731	NM_000061.2	108	Gaa/Aaa																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717731	89717732	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	95	273	0	ENST00000371953.3:c.757dupA	p.Ile253AsnfsTer45	p.I253Nfs*45	ENST00000371953	NM_000314.4	252	-/A																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579329	7579330	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	137	379	0	ENST00000269305.4:c.357dup	p.Lys120GlnfsTer29	p.K120Qfs*29	ENST00000269305	NM_001126112.2	119	-/C																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001967-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			229	183	216	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2193780	2193780	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0001967-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	200	339	0	ENST00000398665.3:c.586G>C	p.Glu196Gln	p.E196Q	ENST00000398665	NM_032482.2	196	Gag/Cag																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123179184	123179184	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001967-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	344	467	0	ENST00000218089.9:c.633A>C	p.Gln211His	p.Q211H	ENST00000218089	NM_001042749.1	211	caA/caC																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68856027	68856028	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001967-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			70	252	515	0	ENST00000261769.5:c.1838dupA	p.Asn613LysfsTer4	p.N613Kfs*4	ENST00000261769	NM_004360.3	612	ata/atAa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	244	521	3	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577573	7577573	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	394	595	2	ENST00000269305.4:c.708C>A	p.Tyr236Ter	p.Y236*	ENST00000269305	NM_001126112.2	236	taC/taA																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971011	21971012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	261	369	0	ENST00000304494.5:c.346_347insT	p.Asp116ValfsTer4	p.D116Vfs*4	ENST00000304494	NM_000077.4	116	gac/gTac																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0000625-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	142	561	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000625-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			216	59	243	1	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156843613	156843613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000625-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			712	218	805	0	ENST00000524377.1:c.1039C>T	p.Arg347Cys	p.R347C	ENST00000524377	NM_002529.3	347	Cgc/Tgc																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	30143444	30143444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000625-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	14	84	0	ENST00000389048.3:c.82C>T	p.Arg28Cys	p.R28C	ENST00000389048	NM_004304.4	28	Cgc/Tgc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112137048	112137048	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000625-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	59	260	0	ENST00000257430.4:c.802G>T	p.Glu268Ter	p.E268*	ENST00000257430	NM_000038.5	268	Gaa/Taa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112170813	112170813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000625-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			423	130	703	0	ENST00000257430.4:c.1909G>A	p.Gly637Arg	p.G637R	ENST00000257430	NM_000038.5	637	Ggg/Agg																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103518992	103518992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000625-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	173	227	3	ENST00000355739.4:c.2330G>A	p.Arg777His	p.R777H	ENST00000355739	NM_000123.3	777	cGc/cAc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0000625-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			270	88	251	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																														NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44896903	44896903	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000625-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			704	48	1230	0	ENST00000377967.4:c.623A>T	p.Gln208Leu	p.Q208L	ENST00000377967	NM_021140.2	208	cAa/cTa																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1254614	1254614	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201330213		P-0008570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	120	267	0	ENST00000310581.5:c.3164C>T	p.Ser1055Leu	p.S1055L	ENST00000310581	NM_198253.2	1055	tCg/tTg																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111467	8111468	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	155	360	0	ENST00000346208.3:c.954dup	p.Asn319GlufsTer33	p.N319Efs*33	ENST00000346208		318	gcg/gcGg																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118373848	118373848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	65	396	1	ENST00000534358.1:c.7241C>T	p.Ser2414Leu	p.S2414L	ENST00000534358	NM_005933.3	2414	tCa/tTa																																													NEWRECORD																																		
H3F3C	440093	MSKCC	GRCh37	12	31945034	31945034	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1185	163	672	0	ENST00000340398.3:c.67A>T	p.Thr23Ser	p.T23S	ENST00000340398	NM_001013699.2	23	Acg/Tcg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577100	7577101	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	167	610	1	ENST00000269305.4:c.837_838insT	p.Arg280Ter	p.R280*	ENST00000269305	NM_001126112.2	279	-/T																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29486027	29486027	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0013656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	112	307	0	ENST00000358273.4:c.205-1G>A		p.X69_splice	ENST00000358273	NM_001042492.2	69																																														NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	795	530	0	ENST00000346208.3:c.1220_1221insA	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcAg																																													NEWRECORD																																		
RAD54L	8438	MSKCC	GRCh37	1	46715685	46715685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	587	640	0	ENST00000371975.4:c.104G>A	p.Arg35Gln	p.R35Q	ENST00000371975	NM_003579.3	35	cGg/cAg																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151859467	151859467	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	201	396	0	ENST00000262189.6:c.11195A>T	p.Glu3732Val	p.E3732V	ENST00000262189	NM_170606.2	3732	gAg/gTg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108173586	108173586	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	165	213	0	ENST00000278616.4:c.5326G>T	p.Glu1776Ter	p.E1776*	ENST00000278616	NM_000051.3	1776	Gaa/Taa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0009845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	97	509	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767326		P-0009845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	106	435	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202149962	202149962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	95	436	0	ENST00000358485.4:c.1403G>A	p.Cys468Tyr	p.C468Y	ENST00000358485	NM_001080125.1	468	tGt/tAt																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44910975	44910975	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	192	699	2	ENST00000377967.4:c.676G>T	p.Glu226Ter	p.E226*	ENST00000377967	NM_021140.2	226	Gaa/Taa																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67457681	67457682	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	168	529	0	ENST00000327367.4:c.492dup	p.Asn165Ter	p.N165*	ENST00000327367	NM_005902.3	164	act/acTt																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38064155	38064155	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	294	513	2	ENST00000250448.2:c.23A>T	p.Glu8Val	p.E8V	ENST00000250448	NM_004496.3	8	gAa/gTa																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89624292	89624321	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTAGACTTGACCTGTATCCATTTCTGCGG	CTTAGACTTGACCTGTATCCATTTCTGCGG	-			P-0012632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	75	276	0	ENST00000371953.3:c.68_79+18del		p.X23_splice	ENST00000371953	NM_000314.4	23																																														NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36164858	36164859	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGCGCGGGGAACT			P-0012632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	128	347	0	ENST00000300305.3:c.1004_1016dup	p.Pro340ValfsTer264	p.P340Vfs*264	ENST00000300305		339	ctg/ctAGTTCCCCGCGCTg																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68867178	68867196	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCCTTCTTCTTTAGAATC	TCCCTTCTTCTTTAGAATC	-			P-0012632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	268	218	0	ENST00000261769.5:c.2440-14_2444del		p.X814_splice	ENST00000261769	NM_004360.3	814																																														NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0010852-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	349	419	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577567	7577568	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CACATGTAGTTGT			P-0010852-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	358	464	0	ENST00000269305.4:c.701_713dup	p.Cys238Ter	p.C238*	ENST00000269305	NM_001126112.2	238	tgt/tgACAACTACATGTGt																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48575172	48575184	+	frameshift_variant	Frame_Shift_Del	DEL	ATGTGATAGTGTC	ATGTGATAGTGTC	TGT			P-0010852-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	210	405	0	ENST00000342988.3:c.366_378delinsTGT	p.Lys122AsnfsTer4	p.K122Nfs*4	ENST00000342988	NM_005359.5	122	aaATGTGATAGTGTC/aaTGT																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0012543-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	101	417	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061194	38061195	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTT			P-0012543-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	109	253	0	ENST00000250448.2:c.794_795insAAG	p.Arg265_Phe266insSer	p.R265_F266insS	ENST00000250448	NM_004496.3	265	cgc/cgAAGc																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	124	549	3	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	26	481	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																														NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	38	430	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	14	243	0	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49427265	49427266	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	49	406	1	ENST00000301067.7:c.11220_11222dup	p.Gln3745dup	p.Q3745dup	ENST00000301067	NM_003482.3	3745	caa/caGCAa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	110	435	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173847	112173848	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	107	451	0	ENST00000257430.4:c.2563_2564dup	p.Arg856AsnfsTer6	p.R856Nfs*6	ENST00000257430	NM_000038.5	852	-/GA																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	20	755	2	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	102	450	2	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																													NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64129428	64129428	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61736650		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	31	509	0	ENST00000334205.4:c.860C>T	p.Ala287Val	p.A287V	ENST00000334205	NM_003942.2	287	gCg/gTg																																													NEWRECORD																																		
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	58	510	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49448407	49448408	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	27	513	0	ENST00000301067.7:c.303dup	p.Ser102GlufsTer6	p.S102Efs*6	ENST00000301067	NM_003482.3	101	-/G																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56161182	56161182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	71	449	0	ENST00000399503.3:c.1051C>T	p.Arg351Cys	p.R351C	ENST00000399503	NM_005921.1	351	Cgt/Tgt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	82	412	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	212	487	6	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	37	404	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	48	426	0	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta																																													NEWRECORD																																		
BCL6	604	MSKCC	GRCh37	3	187442854	187442854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867576130		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	48	389	1	ENST00000232014.4:c.1852C>T	p.Arg618Cys	p.R618C	ENST00000232014	NM_001130845.1	618	Cgt/Tgt																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16259852	16259852	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	39	512	0	ENST00000375759.3:c.7117A>G	p.Thr2373Ala	p.T2373A	ENST00000375759	NM_015001.2	2373	Aca/Gca																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65306989	65306989	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	52	446	0	ENST00000342505.4:c.2588C>A	p.Thr863Asn	p.T863N	ENST00000342505	NM_002227.2	863	aCt/aAt																																													NEWRECORD																																		
RFWD2	64326	MSKCC	GRCh37	1	176015428	176015428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	55	515	1	ENST00000367669.3:c.1310C>T	p.Ala437Val	p.A437V	ENST00000367669	NM_022457.5	437	gCg/gTg																																													NEWRECORD																																		
MYCN	4613	MSKCC	GRCh37	2	16082943	16082943	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	17	148	0	ENST00000281043.3:c.757A>G	p.Ser253Gly	p.S253G	ENST00000281043	NM_005378.4	253	Agt/Ggt																																													NEWRECORD																																		
INPP4A	3631	MSKCC	GRCh37	2	99163159	99163159	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	98	507	2	ENST00000074304.5:c.1163+2T>C		p.X388_splice	ENST00000074304	NM_001134224.1	388																																														NEWRECORD																																		
ERCC3	2071	MSKCC	GRCh37	2	128044377	128044377	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	61	616	0	ENST00000285398.2:c.1244A>G	p.His415Arg	p.H415R	ENST00000285398	NM_000122.1	415	cAc/cGc																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202141632	202141632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	88	520	1	ENST00000358485.4:c.920G>A	p.Arg307Gln	p.R307Q	ENST00000358485	NM_001080125.1	307	cGg/cAg																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202149917	202149917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	51	466	0	ENST00000358485.4:c.1358C>T	p.Pro453Leu	p.P453L	ENST00000358485	NM_001080125.1	453	cCg/cTg																																													NEWRECORD																																		
IDH1	3417	MSKCC	GRCh37	2	209106796	209106796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	55	516	0	ENST00000345146.2:c.772G>A	p.Ala258Thr	p.A258T	ENST00000345146	NM_005896.2	258	Gct/Act																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212293208	212293208	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	20	297	0	ENST00000342788.4:c.2644A>G	p.Met882Val	p.M882V	ENST00000342788	NM_005235.2	882	Atg/Gtg																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227660957	227660957	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	51	560	0	ENST00000305123.5:c.2498A>C	p.His833Pro	p.H833P	ENST00000305123	NM_005544.2	833	cAc/cCc																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227663375	227663375	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	11	207	0	ENST00000305123.5:c.80A>G	p.Lys27Arg	p.K27R	ENST00000305123	NM_005544.2	27	aAa/aGa																																													NEWRECORD																																		
MLH1	4292	MSKCC	GRCh37	3	37091995	37091995	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	85	477	0	ENST00000231790.2:c.2122A>T	p.Ile708Phe	p.I708F	ENST00000231790	NM_000249.3	708	Att/Ttt																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49928016	49928016	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	156	713	0	ENST00000296474.3:c.3712T>C	p.Tyr1238His	p.Y1238H	ENST00000296474	NM_002447.2	1238	Tac/Cac																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52696160	52696160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	45	492	0	ENST00000394830.3:c.517G>T	p.Val173Leu	p.V173L	ENST00000394830	NM_018313.4	173	Gtg/Ttg																																													NEWRECORD																																		
GSK3B	2932	MSKCC	GRCh37	3	119720964	119720964	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	75	541	0	ENST00000316626.5:c.211T>C	p.Tyr71His	p.Y71H	ENST00000316626		71	Tat/Cat																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180038428	180038428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	34	575	0	ENST00000261937.6:c.3589G>T	p.Gly1197Cys	p.G1197C	ENST00000261937	NM_182925.4	1197	Ggc/Tgc																																													NEWRECORD																																		
IRF4	3662	MSKCC	GRCh37	6	394893	394893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	41	351	0	ENST00000380956.4:c.289C>A	p.Leu97Met	p.L97M	ENST00000380956	NM_001195286.1	97	Ctg/Atg																																													NEWRECORD																																		
HIST1H2BD	3017	MSKCC	GRCh37	6	26158605	26158605	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	24	205	0	ENST00000289316.2:c.208A>G	p.Ile70Val	p.I70V	ENST00000289316	NM_138720.2	70	Atc/Gtc																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30671994	30671994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	35	692	0	ENST00000376406.3:c.4966G>A	p.Ala1656Thr	p.A1656T	ENST00000376406	NM_014641.2	1656	Gca/Aca																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30679708	30679708	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	50	590	0	ENST00000376406.3:c.2011G>T	p.Gly671Ter	p.G671*	ENST00000376406	NM_014641.2	671	Gga/Tga																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	93956659	93956659	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	52	818	0	ENST00000369303.4:c.2577G>T	p.Met859Ile	p.M859I	ENST00000369303	NM_004440.3	859	atG/atT																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	94066534	94066534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	115	695	3	ENST00000369303.4:c.1225G>A	p.Ala409Thr	p.A409T	ENST00000369303	NM_004440.3	409	Gct/Act																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117658485	117658485	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	49	282	0	ENST00000368508.3:c.5098T>C	p.Tyr1700His	p.Y1700H	ENST00000368508	NM_002944.2	1700	Tac/Cac																																													NEWRECORD																																		
PARK2	5071	MSKCC	GRCh37	6	161969968	161969968	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746215864		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	41	494	1	ENST00000366898.1:c.1001G>A	p.Arg334His	p.R334H	ENST00000366898	NM_004562.2	334	cGc/cAc																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2951847	2951847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	54	512	0	ENST00000396946.4:c.3103G>A	p.Glu1035Lys	p.E1035K	ENST00000396946	NM_032415.4	1035	Gaa/Aaa																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2951862	2951862	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	24	484	0	ENST00000396946.4:c.3088A>G	p.Asn1030Asp	p.N1030D	ENST00000396946	NM_032415.4	1030	Aac/Gac																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8636784	8636784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	44	459	0	ENST00000356435.5:c.125C>T	p.Ser42Phe	p.S42F	ENST00000356435		42	tCt/tTt																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133759443	133759443	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376925416		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	44	747	0	ENST00000318560.5:c.1766G>A	p.Arg589His	p.R589H	ENST00000318560	NM_005157.4	589	cGc/cAc																																													NEWRECORD																																		
PAK1	5058	MSKCC	GRCh37	11	77070034	77070034	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	60	400	1	ENST00000356341.3:c.506C>T	p.Ala169Val	p.A169V	ENST00000356341	NM_002576.4	169	gCa/gTa																																													NEWRECORD																																		
H3F3C	440093	MSKCC	GRCh37	12	31944961	31944961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	129	516	2	ENST00000340398.3:c.140C>T	p.Ala47Val	p.A47V	ENST00000340398	NM_001013699.2	47	gCg/gTg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49432135	49432135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	52	599	0	ENST00000301067.7:c.9004G>A	p.Ala3002Thr	p.A3002T	ENST00000301067	NM_003482.3	3002	Gcc/Acc																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56478923	56478923	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	52	574	0	ENST00000267101.3:c.379T>C	p.Ser127Pro	p.S127P	ENST00000267101	NM_001982.3	127	Tcc/Ccc																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133252337	133252337	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	108	481	0	ENST00000320574.5:c.1090G>T	p.Gly364Trp	p.G364W	ENST00000320574	NM_006231.2	364	Ggg/Tgg																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007688	45007688	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	65	413	1	ENST00000558401.1:c.135C>A	p.Cys45Ter	p.C45*	ENST00000558401	NM_004048.2	45	tgC/tgA																																													NEWRECORD																																		
MAP2K1	5604	MSKCC	GRCh37	15	66782067	66782067	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	33	457	0	ENST00000307102.5:c.1034A>C	p.Asn345Thr	p.N345T	ENST00000307102	NM_002755.3	345	aAc/aCc																																													NEWRECORD																																		
ERCC4	2072	MSKCC	GRCh37	16	14029555	14029555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	15	205	1	ENST00000311895.7:c.1766G>A	p.Arg589Gln	p.R589Q	ENST00000311895	NM_005236.2	589	cGg/cAg																																													NEWRECORD																																		
NUP93	9688	MSKCC	GRCh37	16	56864597	56864597	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	69	656	1	ENST00000308159.5:c.1085G>T	p.Arg362Ile	p.R362I	ENST00000308159	NM_014669.4	362	aGa/aTa																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89346403	89346403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	52	617	0	ENST00000301030.4:c.6547G>T	p.Val2183Leu	p.V2183L	ENST00000301030	NM_001256183.1	2183	Gtg/Ttg																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89849325	89849325	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	52	607	0	ENST00000389301.3:c.1568T>A	p.Val523Asp	p.V523D	ENST00000389301	NM_000135.2	523	gTt/gAt																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29664858	29664858	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	35	403	0	ENST00000358273.4:c.6664A>G	p.Thr2222Ala	p.T2222A	ENST00000358273	NM_001042492.2	2222	Acg/Gcg																																													NEWRECORD																																		
SUZ12	23512	MSKCC	GRCh37	17	30325991	30325991	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	36	431	0	ENST00000322652.5:c.2189T>C	p.Val730Ala	p.V730A	ENST00000322652	NM_015355.2	730	gTt/gCt																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41246352	41246352	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780794		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	36	551	0	ENST00000357654.3:c.1196A>G	p.His399Arg	p.H399R	ENST00000357654	NM_007294.3	399	cAt/cGt																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119014	70119014	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	26	470	0	ENST00000245479.2:c.586A>G	p.Thr196Ala	p.T196A	ENST00000245479	NM_000346.3	196	Acg/Gcg																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70120178	70120178	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057518216		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	33	263	2	ENST00000245479.2:c.1180C>T	p.Arg394Ter	p.R394*	ENST00000245479	NM_000346.3	394	Cga/Tga																																													NEWRECORD																																		
TCF3	6929	MSKCC	GRCh37	19	1612341	1612341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	69	690	1	ENST00000344749.5:c.1678C>T	p.Arg560Trp	p.R560W	ENST00000344749	NM_001136139.2	560	Cgg/Tgg																																													NEWRECORD																																		
GNA11	2767	MSKCC	GRCh37	19	3110228	3110228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	46	597	2	ENST00000078429.4:c.218G>A	p.Arg73His	p.R73H	ENST00000078429	NM_002067.2	73	cGc/cAc																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15355121	15355121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	26	452	0	ENST00000263377.2:c.2502G>T	p.Glu834Asp	p.E834D	ENST00000263377	NM_058243.2	834	gaG/gaT																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41743944	41743944	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	35	627	0	ENST00000301178.4:c.879G>T	p.Gln293His	p.Q293H	ENST00000301178	NM_021913.4	293	caG/caT																																													NEWRECORD																																		
ERCC2	2068	MSKCC	GRCh37	19	45860903	45860903	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	48	582	0	ENST00000391945.4:c.1292C>A	p.Pro431His	p.P431H	ENST00000391945	NM_000400.3	431	cCc/cAc																																													NEWRECORD																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52723079	52723079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	11	238	0	ENST00000322088.6:c.1264G>A	p.Ala422Thr	p.A422T	ENST00000322088	NM_014225.5	422	Gcc/Acc																																													NEWRECORD																																		
BCL2L1	598	MSKCC	GRCh37	20	30309568	30309568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	32	528	1	ENST00000307677.4:c.454G>A	p.Val152Met	p.V152M	ENST00000307677	NM_138578.1	152	Gtg/Atg																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41408879	41408879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	28	527	1	ENST00000373198.4:c.547C>T	p.Arg183Trp	p.R183W	ENST00000373198	NM_133170.3	183	Cgg/Tgg																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53250089	53250089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	72	321	0	ENST00000375401.3:c.160C>T	p.Pro54Ser	p.P54S	ENST00000375401	NM_004187.3	54	Cca/Tca																																													NEWRECORD																																		
XIAP	331	MSKCC	GRCh37	X	123019579	123019579	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	94	351	0	ENST00000355640.3:c.67T>C	p.Phe23Leu	p.F23L	ENST00000355640		23	Ttt/Ctt																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18491389	18491390	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	50	483	0	ENST00000266497.5:c.1309dupA	p.Ile437AsnfsTer19	p.I437Nfs*19	ENST00000266497		434	-/A																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30686315	30686316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	102	393	0	ENST00000359013.4:c.250dup	p.Ser84PhefsTer4	p.S84Ffs*4	ENST00000359013	NM_001024847.2	82	-/T																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176721164	176721165	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	16	310	0	ENST00000439151.2:c.6801dup	p.Ala2268SerfsTer13	p.A2268Sfs*13	ENST00000439151	NM_022455.4	2265	-/A																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52637539	52637540	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	34	418	0	ENST00000394830.3:c.2776dup	p.Arg926LysfsTer4	p.R926Kfs*4	ENST00000394830	NM_018313.4	926	aga/aAga																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41246158	41246158	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	52	440	0	ENST00000357654.3:c.1390del	p.Thr464ProfsTer11	p.T464Pfs*11	ENST00000357654	NM_007294.3	464	Acc/cc																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56184150	56184150	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	62	458	0	ENST00000399503.3:c.4359del	p.Lys1453AsnfsTer8	p.K1453Nfs*8	ENST00000399503	NM_005921.1	1452	gAa/ga																																													NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91310208	91310208	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs747341586		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	77	566	2	ENST00000355112.3:c.2268del	p.Asp757ThrfsTer4	p.D757Tfs*4	ENST00000355112	NM_000057.2	754	tcA/tc																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411001	63411002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	94	296	0	ENST00000330258.3:c.2165dup	p.Gln723ProfsTer3	p.Q723Pfs*3	ENST00000330258	NM_152424.3	722	ttc/ttTc																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16029437	16029439	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	66	497	0	ENST00000268712.3:c.1591_1593delGAA	p.Glu531del	p.E531del	ENST00000268712	NM_006311.3	531	GAA/-																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16022738	16022738	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	84	467	4	ENST00000268712.3:c.1914delA	p.Gly639ValfsTer2	p.G639Vfs*2	ENST00000268712	NM_006311.3	638	aaA/aa																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11097624	11097625	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1165714406		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	34	604	1	ENST00000344626.4:c.810dup	p.Gly271ArgfsTer16	p.G271Rfs*16	ENST00000344626	NM_003072.3	268	-/C																																													NEWRECORD																																		
HNF1A	6927	MSKCC	GRCh37	12	121434361	121434361	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	36	356	0	ENST00000257555.6:c.1129delC	p.Leu377SerfsTer7	p.L377Sfs*7	ENST00000257555		375	ggC/gg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27097808	27097808	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	48	392	0	ENST00000324856.7:c.3399del	p.Ser1134LeufsTer27	p.S1134Lfs*27	ENST00000324856	NM_006015.4	1133	Ccc/cc																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16202752	16202753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	54	553	1	ENST00000375759.3:c.465dup	p.Thr156AspfsTer5	p.T156Dfs*5	ENST00000375759	NM_015001.2	154	cgg/cGgg																																													NEWRECORD																																		
MRE11A	4361	MSKCC	GRCh37	11	94209523	94209523	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	65	563	0	ENST00000323929.3:c.591del	p.Val198Ter	p.V198*	ENST00000323929	NM_005591.3	197	aaA/aa																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135772950	135772951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs118203724		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	38	392	1	ENST00000298552.3:c.2672dup	p.Asn891LysfsTer13	p.N891Kfs*13	ENST00000298552	NM_001162426.1	891	aac/aaAc																																													NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58740623	58740624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs763475304		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	51	809	0	ENST00000305921.3:c.1535dup	p.Asn512LysfsTer16	p.N512Kfs*16	ENST00000305921	NM_003620.3	510	caa/cAaa																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42042278	42042278	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	61	915	0	ENST00000219905.7:c.6474del	p.Glu2160ArgfsTer19	p.E2160Rfs*19	ENST00000219905	NM_001164273.1	2158	gCc/gc																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46211615	46211615	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	54	487	0	ENST00000334344.6:c.585del	p.Asp196IlefsTer19	p.D196Ifs*19	ENST00000334344	NM_152641.2	194	gAa/ga																																													NEWRECORD																																		
REL	5966	MSKCC	GRCh37	2	61149655	61149656	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	18	204	0	ENST00000295025.8:c.1851dup	p.Gln618SerfsTer8	p.Q618Sfs*8	ENST00000295025	NM_002908.2	615	-/T																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	57	564	0	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70117594	70117594	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	56	500	0	ENST00000245479.2:c.66del	p.Ser23AlafsTer38	p.S23Afs*38	ENST00000245479	NM_000346.3	21	gCc/gc																																													NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58734176	58734177	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	69	774	0	ENST00000305921.3:c.1238dup	p.Cys414MetfsTer20	p.C414Mfs*20	ENST00000305921	NM_003620.3	412	tcc/tCcc																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135785963	135785964	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	28	362	0	ENST00000298552.3:c.1257dupC	p.Arg420GlnfsTer22	p.R420Qfs*22	ENST00000298552	NM_001162426.1	419	-/C																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151874013	151874013	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	65	564	2	ENST00000262189.6:c.8525delA	p.Asn2842MetfsTer21	p.N2842Mfs*21	ENST00000262189	NM_170606.2	2842	aAt/at																																													NEWRECORD																																		
BCL10	8915	MSKCC	GRCh37	1	85733413	85733414	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	65	905	0	ENST00000370580.1:c.598dup	p.Ala200GlyfsTer20	p.A200Gfs*20	ENST00000370580	NM_003921.4	200	gct/gGct																																													NEWRECORD																																		
CSF3R	1441	MSKCC	GRCh37	1	36932274	36932275	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	47	822	0	ENST00000361632.4:c.2194dup	p.Asp732GlyfsTer40	p.D732Gfs*40	ENST00000361632		732	gac/gGac																																													NEWRECORD																																		
PIK3R3	8503	MSKCC	GRCh37	1	46531827	46531827	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	74	469	0	ENST00000262741.5:c.520A>T	p.Ile174Phe	p.I174F	ENST00000262741	NM_003629.3	174	Att/Ttt																																													NEWRECORD																																		
IKBKE	9641	MSKCC	GRCh37	1	206667324	206667324	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	60	303	0	ENST00000367120.3:c.2117G>T	p.Arg706Leu	p.R706L	ENST00000367120	NM_014002.3	706	cGg/cTg																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	84	441	0	ENST00000262992.4:c.2452A>T	p.Arg818Ter	p.R818*	ENST00000262992	NM_001101669.1	818	Aga/Tga																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131915589	131915589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			178	40	163	0	ENST00000265335.6:c.587G>T	p.Arg196Leu	p.R196L	ENST00000265335		196	cGt/cTt																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117710626	117710626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	66	218	0	ENST00000368508.3:c.1646G>A	p.Gly549Asp	p.G549D	ENST00000368508	NM_002944.2	549	gGc/gAc																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106515161	106515161	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			502	66	306	0	ENST00000359195.3:c.2304A>T	p.Lys768Asn	p.K768N	ENST00000359195	NM_002649.2	768	aaA/aaT																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128846052	128846052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			513	83	510	0	ENST00000249373.3:c.982G>T	p.Gly328Cys	p.G328C	ENST00000249373	NM_005631.4	328	Ggt/Tgt																																													NEWRECORD																																		
FGFR1	2260	MSKCC	GRCh37	8	38283714	38283714	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	58	285	0	ENST00000425967.3:c.764A>G	p.Asp255Gly	p.D255G	ENST00000425967	NM_001174067.1	255	gAc/gGc																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8465473	8465473	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	54	319	0	ENST00000356435.5:c.3707C>A	p.Ala1236Glu	p.A1236E	ENST00000356435		1236	gCa/gAa																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8518406	8518406	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			97	27	101	0	ENST00000356435.5:c.985C>G	p.Pro329Ala	p.P329A	ENST00000356435		329	Cct/Gct																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115760	8115760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			645	93	535	0	ENST00000346208.3:c.1106C>A	p.Ser369Tyr	p.S369Y	ENST00000346208		369	tCt/tAt																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43604479	43604479	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	60	287	0	ENST00000355710.3:c.1064G>T	p.Arg355Met	p.R355M	ENST00000355710	NM_020975.4	355	aGg/aTg																																													NEWRECORD																																		
HRAS	3265	MSKCC	GRCh37	11	534285	534285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	163	310	0	ENST00000311189.7:c.38G>T	p.Gly13Val	p.G13V	ENST00000311189		13	gGt/gTt																																													NEWRECORD																																		
MYOD1	4654	MSKCC	GRCh37	11	17742507	17742507	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	88	516	0	ENST00000250003.3:c.689A>T	p.Tyr230Phe	p.Y230F	ENST00000250003	NM_002478.4	230	tAc/tTc																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118343274	118343274	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			281	38	256	0	ENST00000534358.1:c.1400A>T	p.Gln467Leu	p.Q467L	ENST00000534358	NM_005933.3	467	cAg/cTg																																													NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28623608	28623608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	58	188	0	ENST00000241453.7:c.949G>T	p.Val317Leu	p.V317L	ENST00000241453	NM_004119.2	317	Gta/Tta																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110436404	110436404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	41	210	1	ENST00000375856.3:c.1997G>T	p.Gly666Val	p.G666V	ENST00000375856	NM_003749.2	666	gGg/gTg																																													NEWRECORD																																		
TSHR	7253	MSKCC	GRCh37	14	81558951	81558951	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	50	276	0	ENST00000298171.2:c.544C>A	p.Leu182Met	p.L182M	ENST00000298171	NM_000369.2	182	Ctg/Atg																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99467225	99467225	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			262	64	322	0	ENST00000268035.6:c.2606A>C	p.Tyr869Ser	p.Y869S	ENST00000268035	NM_000875.3	869	tAc/tCc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934578		P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			155	67	164	1	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29559870	29559870	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	46	205	0	ENST00000358273.4:c.3467A>T	p.Asn1156Ile	p.N1156I	ENST00000358273	NM_001042492.2	1156	aAc/aTc																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29560181	29560181	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			244	38	181	0	ENST00000358273.4:c.3658G>T	p.Glu1220Ter	p.E1220*	ENST00000358273	NM_001042492.2	1220	Gaa/Taa																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40730934	40730934	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			120	25	106	0	ENST00000373198.4:c.3601C>A	p.Leu1201Ile	p.L1201I	ENST00000373198	NM_133170.3	1201	Ctc/Atc																																													NEWRECORD																																		
PARK2	5071	MSKCC	GRCh37	6	161969982	161969982	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	80	528	0	ENST00000366898.1:c.987del	p.Val330CysfsTer105	p.V330Cfs*105	ENST00000366898	NM_004562.2	329	ggC/gg																																													NEWRECORD																																		
MAX	4149	MSKCC	GRCh37	14	65560477	65560477	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	79	295	0	ENST00000358664.4:c.120delA	p.Asp41ThrfsTer24	p.D41Tfs*24	ENST00000358664	NM_002382.4	40	aaA/aa																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			335	89	331	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41547992	41547993	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			178	45	165	0	ENST00000263253.7:c.2974dup	p.Thr992AsnfsTer10	p.T992Nfs*10	ENST00000263253	NM_001429.3	991	-/A																																													NEWRECORD																																		
SMARCB1	6598	MSKCC	GRCh37	22	24143268	24143269	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	83	460	1	ENST00000263121.7:c.500_500+1delinsTT		p.X167_splice	ENST00000263121	NM_003073.3	167																																														NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88476318	88476319	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	43	281	0	ENST00000360948.2:c.1813_1814delinsTT	p.Gly605Leu	p.G605L	ENST00000360948	NM_001012338.2	605	GGa/TTa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0006940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	90	511	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86659323	86659323	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0006940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	49	475	0	ENST00000274376.6:c.1610+2T>C		p.X537_splice	ENST00000274376	NM_002890.2	537																																														NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971211	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCGCCACTCGGGCGCTGCCCATCATCATGACCTGC	CCGCCACTCGGGCGCTGCCCATCATCATGACCTGC	-			P-0006940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	29	181	0	ENST00000304494.5:c.151-4_181del		p.X51_splice	ENST00000304494	NM_000077.4	51																																														NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577551	7577552	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATGCAGGAACTGTTACACATGTAGTTGTAGTGGATGGTGGTACAGT			P-0006940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	40	629	0	ENST00000269305.4:c.683_729dup	p.Gly244ThrfsTer19	p.G244Tfs*19	ENST00000269305	NM_001126112.2	243	-/ACTGTACCACCATCCACTACAACTACATGTGTAACAGTTCCTGCATG																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	302	454	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753660142		P-0014558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	529	621	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15291056	15291056	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1302	586	711	0	ENST00000263388.2:c.3154G>C	p.Glu1052Gln	p.E1052Q	ENST00000263388	NM_000435.2	1052	Gag/Cag																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15292602	15292603	+	missense_variant	Missense_Mutation	DNP	CA	CA	TC			P-0014558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	432	582	2	ENST00000263388.2:c.2576_2577delinsGA	p.Leu859Arg	p.L859R	ENST00000263388	NM_000435.2	859	cTG/cGA																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151864236	151864239	+	frameshift_variant	Frame_Shift_Del	DEL	CTAG	CTAG	-			P-0014558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	206	197	0	ENST00000262189.6:c.9742_9745del	p.Leu3248AsnfsTer13	p.L3248Nfs*13	ENST00000262189	NM_170606.2	3248	CTAGaa/aa																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151900080	151900081	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	241	294	0	ENST00000262189.6:c.4030dup	p.Ile1344AsnfsTer11	p.I1344Nfs*11	ENST00000262189	NM_170606.2	1344	ata/aAta																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	88	188	0	ENST00000269305.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000269305	NM_001126112.2	105	Ggc/Tgc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	87	142	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	93	216	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115118835	115118835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	135	248	0	ENST00000257566.3:c.506G>T	p.Arg169Leu	p.R169L	ENST00000257566	NM_016569.3	169	cGg/cTg																																													NEWRECORD																																		
ID3	3399	MSKCC	GRCh37	1	23885835	23885835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	156	391	0	ENST00000374561.5:c.83G>T	p.Arg28Leu	p.R28L	ENST00000374561	NM_002167.4	28	cGa/cTa																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27099093	27099093	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	129	227	0	ENST00000324856.7:c.3509A>C	p.His1170Pro	p.H1170P	ENST00000324856	NM_006015.4	1170	cAc/cCc																																													NEWRECORD																																		
CSF3R	1441	MSKCC	GRCh37	1	36935296	36935296	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs144323240		P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	162	529	0	ENST00000361632.4:c.1431G>T	p.Trp477Cys	p.W477C	ENST00000361632		477	tgG/tgT																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120458225	120458225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	44	170	0	ENST00000256646.2:c.7120C>T	p.His2374Tyr	p.H2374Y	ENST00000256646	NM_024408.3	2374	Cat/Tat																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29450512	29450512	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	83	319	0	ENST00000389048.3:c.2842C>A	p.Pro948Thr	p.P948T	ENST00000389048	NM_004304.4	948	Ccc/Acc																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134670645	134670645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	161	341	0	ENST00000398015.3:c.556C>T	p.Leu186Phe	p.L186F	ENST00000398015	NM_004441.4	186	Ctt/Ttt																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142204103	142204103	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	84	248	0	ENST00000350721.4:c.6100G>C	p.Glu2034Gln	p.E2034Q	ENST00000350721	NM_001184.3	2034	Gaa/Caa																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55138612	55138612	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202072966		P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	103	189	0	ENST00000257290.5:c.1289G>A	p.Gly430Glu	p.G430E	ENST00000257290	NM_006206.4	430	gGa/gAa																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30675664	30675664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	129	432	0	ENST00000376406.3:c.2692G>A	p.Glu898Lys	p.E898K	ENST00000376406	NM_014641.2	898	Gag/Aag																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2949704	2949704	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	132	302	0	ENST00000396946.4:c.3240G>C	p.Glu1080Asp	p.E1080D	ENST00000396946	NM_032415.4	1080	gaG/gaC																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003799	45003799	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	116	226	0	ENST00000558401.1:c.55G>T	p.Glu19Ter	p.E19*	ENST00000558401	NM_004048.2	19	Gag/Tag																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29588803	29588803	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	109	300	0	ENST00000358273.4:c.4652A>C	p.His1551Pro	p.H1551P	ENST00000358273	NM_001042492.2	1551	cAc/cCc																																													NEWRECORD																																		
HOXB13	10481	MSKCC	GRCh37	17	46805846	46805846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	165	509	1	ENST00000290295.7:c.110C>T	p.Pro37Leu	p.P37L	ENST00000290295	NM_006361.5	37	cCa/cTa																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10600472	10600472	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	122	293	0	ENST00000171111.5:c.1383C>G	p.Ile461Met	p.I461M	ENST00000171111	NM_203500.1	461	atC/atG																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15298020	15298020	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	123	247	0	ENST00000263388.2:c.1736G>T	p.Cys579Phe	p.C579F	ENST00000263388	NM_000435.2	579	tGc/tTc																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	41988676	41988676	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	176	455	0	ENST00000219905.7:c.1468del	p.Met490CysfsTer33	p.M490Cfs*33	ENST00000219905	NM_001164273.1	490	Atg/tg																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1223038	1223082	+	inframe_deletion	In_Frame_Del	DEL	CCCAGACACCAAGGACCGGTGGCGCAGCATGACTGTGGTGCCGTA	CCCAGACACCAAGGACCGGTGGCGCAGCATGACTGTGGTGCCGTA	-			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	130	265	0	ENST00000326873.7:c.976_1020del	p.Pro326_Tyr340del	p.P326_Y340del	ENST00000326873	NM_000455.4	325	agCCCAGACACCAAGGACCGGTGGCGCAGCATGACTGTGGTGCCGTAc/agc																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187539568	187539568	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	71	210	0	ENST00000441802.2:c.8172del	p.Ile2725SerfsTer28	p.I2725Sfs*28	ENST00000441802	NM_005245.3	2724	ctC/ct																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1223087	1223088	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	146	330	0	ENST00000326873.7:c.1025dup	p.Asp343GlyfsTer17	p.D343Gfs*17	ENST00000326873	NM_000455.4	342	gag/gAag																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18435328	18435329	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	81	221	0	ENST00000266497.5:c.313_314delinsAA	p.Pro105Lys	p.P105K	ENST00000266497		105	CCa/AAa																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41100956	41100957	+	missense_variant	Missense_Mutation	DNP	GG	GG	TC			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	62	154	0	ENST00000373198.4:c.1399_1400delinsGA	p.Pro467Asp	p.P467D	ENST00000373198	NM_133170.3	467	CCc/GAc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	94	664	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55221830	55221830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1178	128	964	3	ENST00000275493.2:c.874G>T	p.Val292Leu	p.V292L	ENST00000275493	NM_005228.3	292	Gtg/Ttg																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9546997	9546997	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	45	378	0	ENST00000353224.5:c.1025C>A	p.Pro342His	p.P342H	ENST00000353224	NM_177990.2	342	cCt/cAt																																													NEWRECORD																																		
CDC73	79577	MSKCC	GRCh37	1	193099362	193099362	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	77	536	0	ENST00000367435.3:c.296A>G	p.Asn99Ser	p.N99S	ENST00000367435	NM_024529.4	99	aAt/aGt																																													NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64137748	64137748	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	89	765	1	ENST00000334205.4:c.1849G>T	p.Gly617Trp	p.G617W	ENST00000334205	NM_003942.2	617	Ggg/Tgg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108121525	108121526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	74	593	0	ENST00000278616.4:c.1333_1334insT	p.Gln445LeufsTer42	p.Q445Lfs*42	ENST00000278616	NM_000051.3	445	caa/cTaa																																													NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58677993	58677993	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	66	466	0	ENST00000305921.3:c.218G>T	p.Arg73Leu	p.R73L	ENST00000305921	NM_003620.3	73	cGa/cTa																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15383775	15383775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	71	865	4	ENST00000263377.2:c.136C>T	p.Pro46Ser	p.P46S	ENST00000263377	NM_058243.2	46	Ccg/Tcg																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25466853	25466853	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	41	568	2	ENST00000264709.3:c.1852-2A>G		p.X618_splice	ENST00000264709	NM_175629.2	618																																														NEWRECORD																																		
INHA	3623	MSKCC	GRCh37	2	220440180	220440180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	109	1030	1	ENST00000243786.2:c.1033G>A	p.Asp345Asn	p.D345N	ENST00000243786	NM_002191.3	345	Gat/Aat																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187510024	187510024	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	76	700	0	ENST00000441802.2:c.13489G>C	p.Asp4497His	p.D4497H	ENST00000441802	NM_005245.3	4497	Gat/Cat																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140439746	140439746	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	48	468	0	ENST00000288602.6:c.1993A>G	p.Ile665Val	p.I665V	ENST00000288602	NM_004333.4	665	Ata/Gta																																													NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90994952	90994952	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1003	99	559	0	ENST00000265433.3:c.169C>G	p.Leu57Val	p.L57V	ENST00000265433	NM_002485.4	57	Ctg/Gtg																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76918990	76918990	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	112	423	0	ENST00000373344.5:c.4001C>G	p.Pro1334Arg	p.P1334R	ENST00000373344	NM_000489.3	1334	cCa/cGa																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133263850	133263850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	21	100	1	ENST00000320574.5:c.52G>A	p.Glu18Lys	p.E18K	ENST00000320574	NM_006231.2	18	Gag/Aag																																													NEWRECORD																																		
CDC73	79577	MSKCC	GRCh37	1	193181212	193181212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	173	314	0	ENST00000367435.3:c.1048C>T	p.Pro350Ser	p.P350S	ENST00000367435	NM_024529.4	350	Ccc/Tcc																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10599868	10599868	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	175	409	1	ENST00000171111.5:c.1708G>T	p.Gly570Ter	p.G570*	ENST00000171111	NM_203500.1	570	Gga/Tga																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119789	70119789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	53	359	0	ENST00000245479.2:c.791G>A	p.Arg264Lys	p.R264K	ENST00000245479	NM_000346.3	264	aGa/aAa																																													NEWRECORD																																		
INHA	3623	MSKCC	GRCh37	2	220437220	220437220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	65	543	0	ENST00000243786.2:c.124G>T	p.Gly42Trp	p.G42W	ENST00000243786	NM_002191.3	42	Ggg/Tgg																																													NEWRECORD																																		
CSF3R	1441	MSKCC	GRCh37	1	36945043	36945043	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	85	449	0	ENST00000361632.4:c.55C>A	p.Leu19Ile	p.L19I	ENST00000361632		19	Ctc/Atc																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65300318	65300318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	51	197	0	ENST00000342505.4:c.3392G>T	p.Cys1131Phe	p.C1131F	ENST00000342505	NM_002227.2	1131	tGc/tTc																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156845873	156845873	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	109	464	0	ENST00000524377.1:c.1503T>G	p.Cys501Trp	p.C501W	ENST00000524377	NM_002529.3	501	tgT/tgG																																													NEWRECORD																																		
MDM4	4194	MSKCC	GRCh37	1	204495523	204495523	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	148	292	0	ENST00000367182.3:c.114T>A	p.His38Gln	p.H38Q	ENST00000367182	NM_001278516.1	38	caT/caA																																													NEWRECORD																																		
MDM4	4194	MSKCC	GRCh37	1	204518424	204518424	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	118	351	0	ENST00000367182.3:c.1087C>T	p.Arg363Ter	p.R363*	ENST00000367182	NM_001278516.1	363	Cga/Tga																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25466852	25466852	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	75	267	0	ENST00000264709.3:c.1852-1G>T		p.X618_splice	ENST00000264709	NM_175629.2	618																																														NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212578362	212578362	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	80	265	0	ENST00000342788.4:c.895G>T	p.Val299Leu	p.V299L	ENST00000342788	NM_005235.2	299	Gta/Tta																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225367741	225367741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	133	361	0	ENST00000264414.4:c.1426G>T	p.Asp476Tyr	p.D476Y	ENST00000264414	NM_003590.4	476	Gat/Tat																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47143043	47143043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	83	291	0	ENST00000409792.3:c.4920G>T	p.Trp1640Cys	p.W1640C	ENST00000409792	NM_014159.6	1640	tgG/tgT																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47164215	47164215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	124	243	0	ENST00000409792.3:c.1911G>T	p.Lys637Asn	p.K637N	ENST00000409792	NM_014159.6	637	aaG/aaT																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71015147	71015147	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	116	279	0	ENST00000318789.4:c.1783C>G	p.Leu595Val	p.L595V	ENST00000318789	NM_032682.5	595	Ctg/Gtg																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89259328	89259328	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	95	360	0	ENST00000336596.2:c.472G>T	p.Gly158Trp	p.G158W	ENST00000336596	NM_005233.5	158	Ggg/Tgg																																													NEWRECORD																																		
GATA2	2624	MSKCC	GRCh37	3	128200062	128200062	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	64	385	0	ENST00000341105.2:c.1243G>T	p.Glu415Ter	p.E415*	ENST00000341105	NM_032638.4	415	Gag/Tag																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134825398	134825398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	71	367	0	ENST00000398015.3:c.914C>A	p.Thr305Asn	p.T305N	ENST00000398015	NM_004441.4	305	aCc/aAc																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142281672	142281672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	139	332	0	ENST00000350721.4:c.572C>T	p.Ser191Leu	p.S191L	ENST00000350721	NM_001184.3	191	tCa/tTa																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187521515	187521515	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	59	153	0	ENST00000441802.2:c.11641-1G>A		p.X3881_splice	ENST00000441802	NM_005245.3	3881																																														NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35873648	35873648	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	117	307	0	ENST00000303115.3:c.604G>C	p.Glu202Gln	p.E202Q	ENST00000303115	NM_002185.3	202	Gag/Cag																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86675622	86675622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	81	243	0	ENST00000274376.6:c.2558C>T	p.Ser853Leu	p.S853L	ENST00000274376	NM_002890.2	853	tCa/tTa																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131930682	131930682	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	63	251	0	ENST00000265335.6:c.1915G>T	p.Glu639Ter	p.E639*	ENST00000265335		639	Gaa/Taa																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2974161	2974161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	96	334	0	ENST00000396946.4:c.1444G>A	p.Glu482Lys	p.E482K	ENST00000396946	NM_032415.4	482	Gag/Aag																																													NEWRECORD																																		
INHBA	3624	MSKCC	GRCh37	7	41729279	41729279	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	112	514	0	ENST00000242208.4:c.1250A>G	p.Asn417Ser	p.N417S	ENST00000242208	NM_002192.2	417	aAc/aGc																																													NEWRECORD																																		
INHBA	3624	MSKCC	GRCh37	7	41729875	41729875	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	89	544	0	ENST00000242208.4:c.654G>T	p.Trp218Cys	p.W218C	ENST00000242208	NM_002192.2	218	tgG/tgT																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81372752	81372752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	132	298	0	ENST00000222390.5:c.782G>T	p.Arg261Leu	p.R261L	ENST00000222390	NM_000601.4	261	cGc/cTc																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106508185	106508185	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	33	122	0	ENST00000359195.3:c.179A>G	p.His60Arg	p.H60R	ENST00000359195	NM_002649.2	60	cAc/cGc																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116418854	116418854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	135	239	0	ENST00000397752.3:c.3365C>T	p.Ser1122Phe	p.S1122F	ENST00000397752	NM_000245.2	1122	tCc/tTc																																													NEWRECORD																																		
FGFR1	2260	MSKCC	GRCh37	8	38271704	38271704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	65	339	3	ENST00000425967.3:c.2245C>A	p.Arg749Ser	p.R749S	ENST00000425967	NM_001174067.1	749	Cgc/Agc																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55371618	55371618	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	49	235	0	ENST00000297316.4:c.308G>T	p.Gly103Val	p.G103V	ENST00000297316	NM_022454.3	103	gGc/gTc																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145739030	145739030	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199562131		P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	100	222	0	ENST00000428558.2:c.2125C>T	p.Arg709Trp	p.R709W	ENST00000428558	NM_004260.3	709	Cgg/Tgg																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8376024	8376024	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	49	310	0	ENST00000356435.5:c.4573C>A	p.Pro1525Thr	p.P1525T	ENST00000356435		1525	Cca/Aca																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70333293	70333293	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	97	350	0	ENST00000373644.4:c.1198G>C	p.Gly400Arg	p.G400R	ENST00000373644	NM_030625.2	400	Ggt/Cgt																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46246242	46246242	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	300	297	0	ENST00000334344.6:c.4336G>C	p.Asp1446His	p.D1446H	ENST00000334344	NM_152641.2	1446	Gat/Cat																																													NEWRECORD																																		
MDM2	4193	MSKCC	GRCh37	12	69210637	69210637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	410	324	0	ENST00000462284.1:c.220G>A	p.Asp74Asn	p.D74N	ENST00000462284	NM_002392.5	74	Gat/Aat																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133220449	133220449	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	199	247	0	ENST00000320574.5:c.4264G>C	p.Asp1422His	p.D1422H	ENST00000320574	NM_006231.2	1422	Gac/Cac																																													NEWRECORD																																		
FOXO1	2308	MSKCC	GRCh37	13	41134724	41134724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	147	532	0	ENST00000379561.5:c.904C>T	p.His302Tyr	p.H302Y	ENST00000379561	NM_002015.3	302	Cac/Tac																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42042428	42042428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	73	582	0	ENST00000219905.7:c.6623G>A	p.Cys2208Tyr	p.C2208Y	ENST00000219905	NM_001164273.1	2208	tGt/tAt																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42054540	42054540	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	131	424	0	ENST00000219905.7:c.7724G>C	p.Arg2575Thr	p.R2575T	ENST00000219905	NM_001164273.1	2575	aGa/aCa																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	10274153	10274153	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	21	243	0	ENST00000330684.3:c.116T>G	p.Met39Arg	p.M39R	ENST00000330684	NM_001134407.1	39	aTg/aGg																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72845577	72845577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	73	534	0	ENST00000268489.5:c.3763C>T	p.Pro1255Ser	p.P1255S	ENST00000268489	NM_006885.3	1255	Ccc/Tcc																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89806439	89806439	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	157	373	0	ENST00000389301.3:c.3897G>C	p.Lys1299Asn	p.K1299N	ENST00000389301	NM_000135.2	1299	aaG/aaC																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37682139	37682139	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	123	282	0	ENST00000447079.4:c.3330G>T	p.Gln1110His	p.Q1110H	ENST00000447079	NM_015083.1	1110	caG/caT																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41209094	41209094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	155	445	0	ENST00000357654.3:c.5252G>T	p.Arg1751Leu	p.R1751L	ENST00000357654	NM_007294.3	1751	cGa/cTa																																													NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58678098	58678098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	113	348	0	ENST00000305921.3:c.323G>A	p.Gly108Asp	p.G108D	ENST00000305921	NM_003620.3	108	gGc/gAc																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1223068	1223068	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	157	356	0	ENST00000326873.7:c.1005G>T	p.Met335Ile	p.M335I	ENST00000326873	NM_000455.4	335	atG/atT																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42794048	42794048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	125	286	0	ENST00000575354.2:c.1409G>T	p.Arg470Leu	p.R470L	ENST00000575354	NM_015125.3	470	cGg/cTg																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9523321	9523321	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	93	354	0	ENST00000353224.5:c.1916G>T	p.Gly639Val	p.G639V	ENST00000353224	NM_177990.2	639	gGc/gTc																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41408885	41408885	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	80	346	0	ENST00000373198.4:c.541G>T	p.Glu181Ter	p.E181*	ENST00000373198	NM_133170.3	181	Gag/Tag																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36164509	36164509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	84	166	0	ENST00000300305.3:c.1366G>A	p.Glu456Lys	p.E456K	ENST00000300305		456	Gag/Aag																																													NEWRECORD																																		
NF2	4771	MSKCC	GRCh37	22	30077474	30077474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	108	243	0	ENST00000338641.4:c.1621G>A	p.Glu541Lys	p.E541K	ENST00000338641	NM_000268.3	541	Gaa/Aaa																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41525962	41525962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	153	346	0	ENST00000263253.7:c.1237G>T	p.Val413Leu	p.V413L	ENST00000263253	NM_001429.3	413	Gtg/Ttg																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47045518	47045518	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	96	179	0	ENST00000329236.7:c.2251G>T	p.Glu751Ter	p.E751*	ENST00000329236	NM_001204466.1	751	Gag/Tag																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52696179	52696179	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	150	484	0	ENST00000394830.3:c.498del	p.Gln167LysfsTer7	p.Q167Kfs*7	ENST00000394830	NM_018313.4	166	ggG/gg																																													NEWRECORD																																		
ERCC3	2071	MSKCC	GRCh37	2	128047811	128047812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	129	367	0	ENST00000285398.2:c.509dup	p.Leu170PhefsTer9	p.L170Ffs*9	ENST00000285398	NM_000122.1	170	ttg/ttTg																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63412247	63412248	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	104	251	0	ENST00000330258.3:c.919dup	p.Asp307GlyfsTer17	p.D307Gfs*17	ENST00000330258	NM_152424.3	307	gac/gGac																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411279	63411280	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	89	240	0	ENST00000330258.3:c.1887_1888delinsTT	p.Gln629_Ala630delinsHisSer	p.Q629_A630delinsHS	ENST00000330258	NM_152424.3	629	caGGcc/caTTcc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579338	7579340	+	frameshift_variant	Frame_Shift_Del	DEL	CAG	CAG	AA			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	90	239	0	ENST00000269305.4:c.347_349delinsTT	p.Ser116PhefsTer7	p.S116Ffs*7	ENST00000269305	NM_001126112.2	116	tCTGgg/tTTgg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	290	421	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	168	298	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112154942	112154942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	235	527	1	ENST00000257430.4:c.1213C>T	p.Arg405Ter	p.R405*	ENST00000257430	NM_000038.5	405	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0014827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	121	294	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114912125	114912125	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	181	379	0	ENST00000543371.1:c.1195T>A	p.Tyr399Asn	p.Y399N	ENST00000543371	NM_001198531.1	399	Tac/Aac																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108151830	108151830	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	135	382	0	ENST00000278616.4:c.3511C>T	p.Gln1171Ter	p.Q1171*	ENST00000278616	NM_000051.3	1171	Cag/Tag																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108205784	108205784	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	94	281	0	ENST00000278616.4:c.8099A>C	p.Lys2700Thr	p.K2700T	ENST00000278616	NM_000051.3	2700	aAa/aCa																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67457652	67457653	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GACT			P-0014827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	422	650	0	ENST00000327367.4:c.463_466dup	p.Tyr156Ter	p.Y156*	ENST00000327367	NM_005902.3	154	-/GACT																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99434685	99434685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	426	464	0	ENST00000268035.6:c.772G>A	p.Gly258Ser	p.G258S	ENST00000268035	NM_000875.3	258	Ggt/Agt																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78704418	78704418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	143	367	1	ENST00000306801.3:c.566C>T	p.Pro189Leu	p.P189L	ENST00000306801	NM_020761.2	189	cCg/cTg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174061	112174061	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0014827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	148	274	0	ENST00000257430.4:c.2770A>T	p.Arg924Ter	p.R924*	ENST00000257430	NM_000038.5	924	Aga/Tga																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98242827	98242827	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	198	360	0	ENST00000331920.6:c.790T>C	p.Phe264Leu	p.F264L	ENST00000331920	NM_000264.3	264	Ttc/Ctc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0013714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	327	460	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	274	518	0	ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971069	21971070	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	64	80	0	ENST00000304494.5:c.288dup	p.Leu97AlafsTer23	p.L97Afs*23	ENST00000304494	NM_000077.4	96	-/G																																													NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0002605-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			777	249	266	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52643972	52643972	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0002605-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	62	149	0	ENST00000394830.3:c.1925-1G>T		p.X642_splice	ENST00000394830	NM_018313.4	642																																														NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89498521	89498521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002605-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			464	88	207	0	ENST00000336596.2:c.2493G>T	p.Gln831His	p.Q831H	ENST00000336596	NM_005233.5	831	caG/caT																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66217279	66217279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002605-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	29	204	0	ENST00000273854.3:c.2336G>T	p.Gly779Val	p.G779V	ENST00000273854	NM_004439.5	779	gGc/gTc																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187542579	187542579	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002605-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			764	76	317	0	ENST00000441802.2:c.5161A>C	p.Thr1721Pro	p.T1721P	ENST00000441802	NM_005245.3	1721	Act/Cct																																													NEWRECORD																																		
FGF4	2249	MSKCC	GRCh37	11	69588233	69588233	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002605-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			504	686	326	0	ENST00000168712.1:c.465C>A	p.Cys155Ter	p.C155*	ENST00000168712	NM_002007.2	155	tgC/tgA																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578242	7578242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002605-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			555	153	326	0	ENST00000269305.4:c.607G>T	p.Val203Leu	p.V203L	ENST00000269305	NM_001126112.2	203	Gtg/Ttg																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29560019	29560019	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0002605-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	132	245	0	ENST00000358273.4:c.3497-1G>T		p.X1166_splice	ENST00000358273	NM_001042492.2	1166																																														NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10597401	10597401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002605-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			488	129	358	0	ENST00000171111.5:c.1802G>T	p.Arg601Leu	p.R601L	ENST00000171111	NM_203500.1	601	cGg/cTg																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157099447	157099448	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAACAGCAACATCCCATTT			P-0002605-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	18	83	0	ENST00000346085.5:c.386_404dup	p.Asn136ThrfsTer102	p.N136Tfs*102	ENST00000346085	NM_020732.3	128	-/CAACAGCAACATCCCATTT																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27097680	27097680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	174	302	0	ENST00000324856.7:c.3269G>T	p.Ser1090Ile	p.S1090I	ENST00000324856	NM_006015.4	1090	aGc/aTc																																													NEWRECORD																																		
MCL1	4170	MSKCC	GRCh37	1	150551862	150551862	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			341	105	155	0	ENST00000369026.2:c.145G>C	p.Gly49Arg	p.G49R	ENST00000369026	NM_021960.4	49	Ggg/Cgg																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134670358	134670358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			558	102	278	0	ENST00000398015.3:c.269G>A	p.Arg90His	p.R90H	ENST00000398015	NM_004441.4	90	cGc/cAc																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142254044	142254044	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			223	16	215	0	ENST00000350721.4:c.3823A>G	p.Thr1275Ala	p.T1275A	ENST00000350721	NM_001184.3	1275	Acc/Gcc																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55961055	55961055	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	109	360	0	ENST00000263923.4:c.2885G>C	p.Arg962Pro	p.R962P	ENST00000263923	NM_002253.2	962	cGc/cCc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174845	112174845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			501	111	296	0	ENST00000257430.4:c.3554C>A	p.Thr1185Lys	p.T1185K	ENST00000257430	NM_000038.5	1185	aCa/aAa																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21970913	21970913	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	106	283	0	ENST00000304494.5:c.445G>T	p.Glu149Ter	p.E149*	ENST00000304494	NM_000077.4	149	Gaa/Taa																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98209320	98209320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			502	103	342	0	ENST00000331920.6:c.4218C>A	p.His1406Gln	p.H1406Q	ENST00000331920	NM_000264.3	1406	caC/caA																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98244319	98244319	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			341	132	263	0	ENST00000331920.6:c.658A>G	p.Ile220Val	p.I220V	ENST00000331920	NM_000264.3	220	Ata/Gta																																													NEWRECORD																																		
WT1	7490	MSKCC	GRCh37	11	32450142	32450142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	88	257	0	ENST00000332351.3:c.670G>T	p.Gly224Trp	p.G224W	ENST00000332351	NM_024426.4	224	Ggg/Tgg																																													NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64138878	64138878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	72	209	2	ENST00000334205.4:c.2245G>A	p.Ala749Thr	p.A749T	ENST00000334205	NM_003942.2	749	Gcc/Acc																																													NEWRECORD																																		
EED	8726	MSKCC	GRCh37	11	85966292	85966292	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			810	83	367	0	ENST00000263360.6:c.389G>T	p.Gly130Val	p.G130V	ENST00000263360	NM_003797.3	130	gGa/gTa																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108153464	108153464	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			435	162	308	4	ENST00000278616.4:c.3604G>T	p.Gly1202Ter	p.G1202*	ENST00000278616	NM_000051.3	1202	Gga/Tga																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3779644	3779644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			503	297	226	0	ENST00000262367.5:c.5404G>A	p.Val1802Met	p.V1802M	ENST00000262367	NM_004380.2	1802	Gtg/Atg																																													NEWRECORD																																		
PRKAR1A	5573	MSKCC	GRCh37	17	66518916	66518916	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			676	94	275	0	ENST00000358598.2:c.197A>T	p.Gln66Leu	p.Q66L	ENST00000358598	NM_212471.2	66	cAg/cTg																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119932	70119932	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			416	171	196	0	ENST00000245479.2:c.934C>T	p.Gln312Ter	p.Q312*	ENST00000245479	NM_000346.3	312	Cag/Tag																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31016030	31016030	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			488	200	306	0	ENST00000375687.4:c.352A>C	p.Thr118Pro	p.T118P	ENST00000375687	NM_015338.5	118	Act/Cct																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36252869	36252869	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	110	298	0	ENST00000300305.3:c.493G>T	p.Gly165Cys	p.G165C	ENST00000300305		165	Ggt/Tgt																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36259143	36259143	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			495	97	318	0	ENST00000300305.3:c.348C>G	p.Phe116Leu	p.F116L	ENST00000300305		116	ttC/ttG																																													NEWRECORD																																		
CRLF2	64109	MSKCC	GRCh37	X	1325400	1325400	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			459	151	325	0	ENST00000381566.1:c.275A>T	p.Asp92Val	p.D92V	ENST00000381566		92	gAc/gTc																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47044557	47044557	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	196	325	0	ENST00000329236.7:c.1820G>T	p.Arg607Leu	p.R607L	ENST00000329236	NM_001204466.1	607	cGg/cTg																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70352694	70352694	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			487	71	299	1	ENST00000374080.3:c.4416-1G>T		p.X1472_splice	ENST00000374080		1472																																														NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64138116	64138117	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	77	272	0	ENST00000334205.4:c.2040dup	p.Ser681LeufsTer123	p.S681Lfs*123	ENST00000334205	NM_003942.2	680	cgc/cgCc																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1219367	1219368	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGACAGCGTGCC			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	92	284	0	ENST00000326873.7:c.423_434dup	p.Asp141_Pro144dup	p.D141_P144dup	ENST00000326873	NM_000455.4	141	ctg/ctGGACAGCGTGCCg																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11141498	11141499	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	165	329	0	ENST00000344626.4:c.3475_3476delinsTT	p.Gly1159Leu	p.G1159L	ENST00000344626	NM_003072.3	1159	GGg/TTg																																													NEWRECORD																																		
RFWD2	64326	MSKCC	GRCh37	1	175956239	175956240	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	72	216	0	ENST00000367669.3:c.1973-1_1973delinsTT		p.X658_splice	ENST00000367669	NM_022457.5	658																																														NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577498	7577499	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	123	208	0	ENST00000269305.4:c.782_782+1delinsTT		p.X261_splice	ENST00000269305	NM_001126112.2	261																																														NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	152	332	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	374	491	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																													NEWRECORD																																		
TOP1	7150	MSKCC	GRCh37	20	39721126	39721126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	74	413	0	ENST00000361337.2:c.629G>A	p.Arg210His	p.R210H	ENST00000361337	NM_003286.2	210	cGc/cAc																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81346659	81346659	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	131	331	0	ENST00000222390.5:c.1294G>T	p.Ala432Ser	p.A432S	ENST00000222390	NM_000601.4	432	Gca/Tca																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106508200	106508200	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	125	140	0	ENST00000359195.3:c.194G>C	p.Gly65Ala	p.G65A	ENST00000359195	NM_002649.2	65	gGc/gCc																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106509240	106509240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	174	509	0	ENST00000359195.3:c.1234G>T	p.Val412Leu	p.V412L	ENST00000359195	NM_002649.2	412	Gtg/Ttg																																													NEWRECORD																																		
FGFR2	2263	MSKCC	GRCh37	10	123310884	123310884	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs200766273		P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	180	522	1	ENST00000358487.5:c.544G>T	p.Gly182Trp	p.G182W	ENST00000358487	NM_000141.4	182	Ggg/Tgg																																													NEWRECORD																																		
CBL	867	MSKCC	GRCh37	11	119149219	119149219	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	232	472	1	ENST00000264033.4:c.1228-1G>T		p.X410_splice	ENST00000264033	NM_005188.3	410																																														NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1207042	1207042	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	235	391	0	ENST00000326873.7:c.130A>T	p.Lys44Ter	p.K44*	ENST00000326873	NM_000455.4	44	Aag/Tag																																													NEWRECORD																																		
ZRSR2	8233	MSKCC	GRCh37	X	15841307	15841307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	379	287	0	ENST00000307771.7:c.1391G>A	p.Arg464His	p.R464H	ENST00000307771	NM_005089.3	464	cGt/cAt																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86658397	86658397	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	88	305	0	ENST00000274376.6:c.1363del	p.Asp455MetfsTer28	p.D455Mfs*28	ENST00000274376	NM_002890.2	454	gtG/gt																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10599938	10599939	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	411	558	0	ENST00000171111.5:c.1637dup	p.Val547ArgfsTer27	p.V547Rfs*27	ENST00000171111	NM_203500.1	546	ttc/ttTc																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81334786	81334787	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	59	374	0	ENST00000222390.5:c.1929_1930delinsAA	p.Ser643_Gln644delinsArgLys	p.S643_Q644delinsRK	ENST00000222390	NM_000601.4	643	agCCag/agAAag																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67591115	67591115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	52	362	1	ENST00000274335.5:c.1708C>T	p.Leu570Phe	p.L570F	ENST00000274335		570	Ctt/Ttt																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974696	21974696	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	100	358	0	ENST00000304494.5:c.131del	p.Tyr44SerfsTer9	p.Y44Sfs*9	ENST00000304494	NM_000077.4	44	tAc/tc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579471	7579472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0014239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	180	615	1	ENST00000269305.4:c.215_216insTG	p.Val73AlafsTer51	p.V73Afs*51	ENST00000269305	NM_001126112.2	72	ccc/ccTGc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579477	7579477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	178	626	0	ENST00000269305.4:c.210del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	70	gcT/gc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	70	142	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115875	8115879	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCT	GCCCT	-			P-0005423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	244	314	1	ENST00000346208.3:c.1221_1225delGCCCT	p.Pro408GlnfsTer97	p.P408Qfs*97	ENST00000346208		407	tcGCCCTtc/tctc																																													NEWRECORD																																		
PMS1	5378	MSKCC	GRCh37	2	190660603	190660603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1118	104	190	0	ENST00000441310.2:c.241C>T	p.His81Tyr	p.H81Y	ENST00000441310	NM_000534.4	81	Cat/Tat																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142168411	142168411	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1198	113	234	0	ENST00000350721.4:c.7795C>A	p.Leu2599Ile	p.L2599I	ENST00000350721	NM_001184.3	2599	Cta/Ata																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38982040	38982040	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1192	110	269	0	ENST00000357387.3:c.682A>T	p.Ile228Phe	p.I228F	ENST00000357387	NM_152756.3	228	Att/Ttt																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	41991118	41991118	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1561	318	332	1	ENST00000219905.7:c.2071G>T	p.Ala691Ser	p.A691S	ENST00000219905	NM_001164273.1	691	Gca/Tca																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41276046	41276047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1362	129	295	0	ENST00000357654.3:c.67_68insC	p.Glu23AlafsTer18	p.E23Afs*18	ENST00000357654	NM_007294.3	23	gag/gCag																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0014899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	442	570	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0014899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	468	825	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42052636	42052636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	323	523	1	ENST00000219905.7:c.7307G>A	p.Arg2436His	p.R2436H	ENST00000219905	NM_001164273.1	2436	cGt/cAt																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118376446	118376446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	281	550	0	ENST00000534358.1:c.9839C>T	p.Ser3280Leu	p.S3280L	ENST00000534358	NM_005933.3	3280	tCa/tTa																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42041097	42041098	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0014899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	277	637	0	ENST00000219905.7:c.5476_5477dupTT	p.Leu1826PhefsTer13	p.L1826Ffs*13	ENST00000219905	NM_001164273.1	1825	-/TT																																													NEWRECORD																																		
MITF	4286	MSKCC	GRCh37	3	70008476	70008476	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	92	533	0	ENST00000352241.4:c.1066C>T	p.Arg356Ter	p.R356*	ENST00000352241	NM_198159.2	356	Cga/Tga																																													NEWRECORD																																		
ERCC4	2072	MSKCC	GRCh37	16	14024721	14024721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	346	250	0	ENST00000311895.7:c.947C>T	p.Thr316Met	p.T316M	ENST00000311895	NM_005236.2	316	aCg/aTg																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	140	169	0	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	721	208	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	465598	465598	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	510	366	1	ENST00000399788.2:c.778G>T	p.Asp260Tyr	p.D260Y	ENST00000399788	NM_001042603.1	260	Gat/Tat																																													NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28626706	28626706	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	445	314	0	ENST00000241453.7:c.590T>C	p.Val197Ala	p.V197A	ENST00000241453	NM_004119.2	197	gTg/gCg																																													NEWRECORD																																		
INHA	3623	MSKCC	GRCh37	2	220439700	220439701	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	721	551	0	ENST00000243786.2:c.562_563dupCT	p.Leu189CysfsTer2	p.L189Cfs*2	ENST00000243786	NM_002191.3	185	gct/gCTct																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16264391	16264391	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145335938		P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	530	449	1	ENST00000375759.3:c.10594G>A	p.Val3532Ile	p.V3532I	ENST00000375759	NM_015001.2	3532	Gtc/Atc																																													NEWRECORD																																		
IKBKE	9641	MSKCC	GRCh37	1	206667296	206667296	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	489	341	0	ENST00000367120.3:c.2089C>A	p.Leu697Ile	p.L697I	ENST00000367120	NM_014002.3	697	Ctc/Atc																																													NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189586482	189586482	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	289	171	0	ENST00000264731.3:c.1106A>G	p.Lys369Arg	p.K369R	ENST00000264731	NM_003722.4	369	aAg/aGg																																													NEWRECORD																																		
FYN	2534	MSKCC	GRCh37	6	112029147	112029147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	756	552	4	ENST00000368678.4:c.421G>A	p.Val141Ile	p.V141I	ENST00000368678		141	Gtt/Att																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98244441	98244441	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	369	273	0	ENST00000331920.6:c.629T>C	p.Ile210Thr	p.I210T	ENST00000331920	NM_000264.3	210	aTc/aCc																																													NEWRECORD																																		
KLF4	9314	MSKCC	GRCh37	9	110249363	110249363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	795	612	0	ENST00000374672.4:c.1210G>A	p.Gly404Ser	p.G404S	ENST00000374672	NM_004235.4	404	Ggc/Agc																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64572613	64572613	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	493	381	1	ENST00000337652.1:c.1258C>T	p.Arg420Ter	p.R420*	ENST00000337652	NM_130803.2	420	Cga/Tga																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49415591	49415591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	470	292	0	ENST00000301067.7:c.16586C>T	p.Ala5529Val	p.A5529V	ENST00000301067	NM_003482.3	5529	gCc/gTc																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32900724	32900724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	516	389	0	ENST00000380152.3:c.605C>T	p.Pro202Leu	p.P202L	ENST00000380152		202	cCc/cTc																																													NEWRECORD																																		
RFWD2	64326	MSKCC	GRCh37	1	175957464	175957465	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	538	376	0	ENST00000367669.3:c.1931dup	p.Asn644LysfsTer17	p.N644Kfs*17	ENST00000367669	NM_022457.5	644	aac/aaAc																																													NEWRECORD																																		
MDM2	4193	MSKCC	GRCh37	12	69233089	69233090	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	388	270	0	ENST00000462284.1:c.961dupC	p.Leu321ProfsTer13	p.L321Pfs*13	ENST00000462284	NM_002392.5	318	-/C																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72821360	72821360	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	424	451	0	ENST00000268489.5:c.10815del	p.Ser3606ProfsTer88	p.S3606Pfs*88	ENST00000268489	NM_006885.3	3605	ccC/cc																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89348560	89348561	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1625	632	795	1	ENST00000301030.4:c.4389_4390del	p.Lys1464ThrfsTer89	p.K1464Tfs*89	ENST00000301030	NM_001256183.1	1463	gaGAaa/gaaa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577084	7577084	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	226	473	0	ENST00000269305.4:c.854A>T	p.Glu285Val	p.E285V	ENST00000269305	NM_001126112.2	285	gAg/gTg																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0010487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	274	254	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																													NEWRECORD																																		
BCL6	604	MSKCC	GRCh37	3	187442788	187442788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	203	398	0	ENST00000232014.4:c.1918C>T	p.Arg640Trp	p.R640W	ENST00000232014	NM_001130845.1	640	Cgg/Tgg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0001130-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	215	270	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66467570	66467570	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001130-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			797	137	335	0	ENST00000273854.3:c.699C>A	p.Cys233Ter	p.C233*	ENST00000273854	NM_004439.5	233	tgC/tgA																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112154696	112154696	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001130-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			587	99	286	0	ENST00000257430.4:c.967G>T	p.Gly323Cys	p.G323C	ENST00000257430	NM_000038.5	323	Ggt/Tgt																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10610136	10610136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001130-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			658	348	392	0	ENST00000171111.5:c.574G>A	p.Glu192Lys	p.E192K	ENST00000171111	NM_203500.1	192	Gag/Aag																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10610217	10610217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001130-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			679	362	417	0	ENST00000171111.5:c.493G>A	p.Asp165Asn	p.D165N	ENST00000171111	NM_203500.1	165	Gac/Aac																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52661309	52661310	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTATCAGT			P-0001130-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			854	252	472	0	ENST00000394830.3:c.1520_1521insACTGATAC	p.Gly508LeufsTer14	p.G508Lfs*14	ENST00000394830	NM_018313.4	507	act/acACTGATACt																																													NEWRECORD																																		
CBL	867	MSKCC	GRCh37	11	119148541	119148546	+	inframe_deletion	In_Frame_Del	DEL	TCAAAG	TCAAAG	-			P-0001130-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			652	324	443	0	ENST00000264033.4:c.1083_1088del	p.Ile361_Val363delinsMet	p.I361_V363delinsM	ENST00000264033	NM_005188.3	361	aTCAAAGtg/atg																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1218422	1218456	+	frameshift_variant	Frame_Shift_Del	DEL	TCAACTACTGAGGAGGTTACGGCACAAAAATGTCA	TCAACTACTGAGGAGGTTACGGCACAAAAATGTCA	-			P-0001130-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			568	49	355	0	ENST00000326873.7:c.299_333del	p.Gln100ProfsTer51	p.Q100Pfs*51	ENST00000326873	NM_000455.4	99	atTCAACTACTGAGGAGGTTACGGCACAAAAATGTCAtc/attc																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11097133	11097134	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0001130-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			481	261	343	0	ENST00000344626.4:c.626dup	p.Met210AspfsTer77	p.M210Dfs*77	ENST00000344626	NM_003072.3	208	-/C																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0011288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	150	529	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0011288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	13	842	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0011288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	62	285	3	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0011288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	92	415	1	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156845371	156845371	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	45	648	0	ENST00000524377.1:c.1414G>T	p.Gly472Cys	p.G472C	ENST00000524377	NM_002529.3	472	Ggt/Tgt																																													NEWRECORD																																		
MITF	4286	MSKCC	GRCh37	3	70014356	70014356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	38	739	0	ENST00000352241.4:c.1520G>A	p.Arg507Gln	p.R507Q	ENST00000352241	NM_198159.2	507	cGg/cAg																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66361213	66361213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	55	366	1	ENST00000273854.3:c.959G>A	p.Gly320Asp	p.G320D	ENST00000273854	NM_004439.5	320	gGc/gAc																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38962670	38962670	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	11	325	0	ENST00000357387.3:c.1585T>A	p.Leu529Ile	p.L529I	ENST00000357387	NM_152756.3	529	Tta/Ata																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157099109	157099109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	10	121	0	ENST00000346085.5:c.46G>A	p.Ala16Thr	p.A16T	ENST00000346085	NM_020732.3	16	Gcc/Acc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5229612	5229612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			8	64	49	0	ENST00000357368.4:c.2239G>A	p.Gly747Ser	p.G747S	ENST00000357368	NM_002850.3	747	Ggc/Agc																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116339352	116339353	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTTTAA			P-0011288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	43	376	0	ENST00000397752.3:c.215_220dup	p.Leu73_Asn74insIleLeu	p.L73_N74insIL	ENST00000397752	NM_000245.2	72	gtt/gTTTTAAtt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	161	375	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46244361	46244361	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	80	426	0	ENST00000334344.6:c.2455C>T	p.Gln819Ter	p.Q819*	ENST00000334344	NM_152641.2	819	Caa/Taa																																													NEWRECORD																																		
PMS1	5378	MSKCC	GRCh37	2	190742103	190742103	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	90	375	1	ENST00000441310.2:c.2740G>T	p.Glu914Ter	p.E914*	ENST00000441310	NM_000534.4	914	Gag/Tag																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151841892	151841892	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	90	488	0	ENST00000262189.6:c.14249A>G	p.Tyr4750Cys	p.Y4750C	ENST00000262189	NM_170606.2	4750	tAt/tGt																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8317907	8317907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	107	497	1	ENST00000356435.5:c.5706G>T	p.Glu1902Asp	p.E1902D	ENST00000356435		1902	gaG/gaT																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10602328	10602328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	80	557	0	ENST00000171111.5:c.1250G>T	p.Gly417Val	p.G417V	ENST00000171111	NM_203500.1	417	gGg/gTg																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11132542	11132542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	38	563	0	ENST00000344626.4:c.2758G>A	p.Glu920Lys	p.E920K	ENST00000344626	NM_003072.3	920	Gag/Aag																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17949183	17949183	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	86	574	0	ENST00000458235.1:c.1458C>G	p.Ile486Met	p.I486M	ENST00000458235	NM_000215.3	486	atC/atG																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41419835	41419835	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	43	414	0	ENST00000373198.4:c.486G>T	p.Gln162His	p.Q162H	ENST00000373198	NM_133170.3	162	caG/caT																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47041007	47041007	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	80	308	0	ENST00000329236.7:c.1303G>T	p.Glu435Ter	p.E435*	ENST00000329236	NM_001204466.1	435	Gag/Tag																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1207042	1207057	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCTCATCGGCAAGT	AAGCTCATCGGCAAGT	-			P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	62	476	0	ENST00000326873.7:c.131_146del	p.Lys44ThrfsTer2	p.K44Tfs*2	ENST00000326873	NM_000455.4	44	AAGCTCATCGGCAAGTac/ac																																													NEWRECORD																																		
IFNGR1	3459	MSKCC	GRCh37	6	137528122	137528123	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	77	428	0	ENST00000367739.4:c.177dup	p.Thr60TyrfsTer10	p.T60Yfs*10	ENST00000367739	NM_000416.2	59	-/T																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153244268	153244271	+	frameshift_variant	Frame_Shift_Del	DEL	AAAC	AAAC	-			P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	50	305	0	ENST00000281708.4:c.1886_1889del	p.Cys629TyrfsTer8	p.C629Yfs*8	ENST00000281708	NM_033632.3	629	tGTTTa/ta																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0014404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	61	552	3	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187630905	187630905	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75367100		P-0014404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	43	412	1	ENST00000441802.2:c.77G>A	p.Arg26Gln	p.R26Q	ENST00000441802	NM_005245.3	26	cGa/cAa																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63537656	63537656	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201387209		P-0014404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	45	423	1	ENST00000307078.5:c.976C>T	p.Arg326Cys	p.R326C	ENST00000307078	NM_004655.3	326	Cgt/Tgt																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55266503	55266503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	38	497	0	ENST00000275493.2:c.2795G>A	p.Arg932His	p.R932H	ENST00000275493	NM_005228.3	932	cGc/cAc																																													NEWRECORD																																		
GATA2	2624	MSKCC	GRCh37	3	128204842	128204842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	38	655	0	ENST00000341105.2:c.599del	p.Gly200ValfsTer18	p.G200Vfs*18	ENST00000341105	NM_032638.4	200	gGt/gt																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771831816		P-0014404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	34	281	0	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187628026	187628026	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750746155		P-0014404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	38	579	0	ENST00000441802.2:c.2956G>A	p.Val986Ile	p.V986I	ENST00000441802	NM_005245.3	986	Gtc/Atc																																													NEWRECORD																																		
XRCC2	7516	MSKCC	GRCh37	7	152345769	152345769	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	23	244	0	ENST00000359321.1:c.801del	p.Lys267AsnfsTer30	p.K267Nfs*30	ENST00000359321	NM_005431.1	267	aaA/aa																																													NEWRECORD																																		
CCND1	595	MSKCC	GRCh37	11	69466004	69466004	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	34	657	1	ENST00000227507.2:c.842T>A	p.Val281Glu	p.V281E	ENST00000227507	NM_053056.2	281	gTg/gAg																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88678499	88678499	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	26	424	0	ENST00000360948.2:c.1037A>G	p.Lys346Arg	p.K346R	ENST00000360948	NM_001012338.2	346	aAg/aGg																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68867216	68867216	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	42	412	0	ENST00000261769.5:c.2466del	p.Thr823GlnfsTer23	p.T823Qfs*23	ENST00000261769	NM_004360.3	821	gaC/ga																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7132211	7132211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	45	582	0	ENST00000302850.5:c.2800G>A	p.Gly934Ser	p.G934S	ENST00000302850	NM_000208.2	934	Ggc/Agc																																													NEWRECORD																																		
RRAS	6237	MSKCC	GRCh37	19	50139929	50139929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	66	690	1	ENST00000246792.3:c.400G>A	p.Asp134Asn	p.D134N	ENST00000246792	NM_006270.3	134	Gac/Aac																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47639621	47639621	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0014404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	28	518	0	ENST00000233146.2:c.714T>G	p.Tyr238Ter	p.Y238*	ENST00000233146	NM_000251.2	238	taT/taG																																													NEWRECORD																																		
RTEL1	51750	MSKCC	GRCh37	20	62320438	62320438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	37	543	0	ENST00000508582.2:c.1903G>A	p.Ala635Thr	p.A635T	ENST00000508582		635	Gcc/Acc																																													NEWRECORD																																		
NF2	4771	MSKCC	GRCh37	22	30067821	30067821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140266312		P-0014404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	17	242	0	ENST00000338641.4:c.1006C>T	p.Arg336Trp	p.R336W	ENST00000338641	NM_000268.3	336	Cgg/Tgg																																													NEWRECORD																																		
DROSHA	29102	MSKCC	GRCh37	5	31526976	31526976	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	40	618	1	ENST00000344624.3:c.64C>T	p.Arg22Ter	p.R22*	ENST00000344624		22	Cga/Tga																																													NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50467870	50467870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	16	272	0	ENST00000331340.3:c.1105G>A	p.Ala369Thr	p.A369T	ENST00000331340	NM_006060.4	369	Gcc/Acc																																													NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50468092	50468092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	21	242	0	ENST00000331340.3:c.1327G>A	p.Glu443Lys	p.E443K	ENST00000331340	NM_006060.4	443	Gag/Aag																																													NEWRECORD																																		
WHSC1L1	54904	MSKCC	GRCh37	8	38133980	38133981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	46	465	0	ENST00000317025.8:c.3905dup	p.Asn1302LysfsTer3	p.N1302Kfs*3	ENST00000317025	NM_023034.1	1302	aat/aaAt																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145739029	145739029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	35	475	1	ENST00000428558.2:c.2126G>A	p.Arg709Gln	p.R709Q	ENST00000428558	NM_004260.3	709	cGg/cAg																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8492897	8492897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	31	351	0	ENST00000356435.5:c.2432G>A	p.Arg811His	p.R811H	ENST00000356435		811	cGc/cAc																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135779102	135779102	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs986350787		P-0014404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	30	345	0	ENST00000298552.3:c.2144G>A	p.Arg715Gln	p.R715Q	ENST00000298552	NM_001162426.1	715	cGg/cAg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			753	116	557	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1119	165	833	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																													NEWRECORD																																		
IDH1	3417	MSKCC	GRCh37	2	209108185	209108185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			762	129	621	1	ENST00000345146.2:c.664C>T	p.Arg222Cys	p.R222C	ENST00000345146	NM_005896.2	222	Cgt/Tgt																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42791356	42791356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			491	86	599	0	ENST00000575354.2:c.416G>A	p.Arg139Gln	p.R139Q	ENST00000575354	NM_015125.3	139	cGg/cAg																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5245976	5245976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			532	74	693	0	ENST00000357368.4:c.799G>A	p.Val267Met	p.V267M	ENST00000357368	NM_002850.3	267	Gtg/Atg																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2223376	2223376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			697	143	752	0	ENST00000398665.3:c.3492del	p.Val1165CysfsTer8	p.V1165Cfs*8	ENST00000398665	NM_032482.2	1163	Ccc/cc																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			379	108	447	3	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57857549	57857549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			767	140	891	2	ENST00000228682.2:c.79delG	p.Ala27ProfsTer51	p.A27Pfs*51	ENST00000228682	NM_005269.2	25	caG/ca																																													NEWRECORD																																		
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			251	32	301	0	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			833	125	668	0	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134851574	134851574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			596	98	514	0	ENST00000398015.3:c.980G>A	p.Arg327His	p.R327H	ENST00000398015	NM_004441.4	327	cGc/cAc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5212130	5212130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			643	98	736	0	ENST00000357368.4:c.4901C>T	p.Thr1634Met	p.T1634M	ENST00000357368	NM_002850.3	1634	aCg/aTg																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50905061	50905061	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			814	66	806	1	ENST00000440232.2:c.347delC	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	115	Ccc/cc																																													NEWRECORD																																		
BCL10	8915	MSKCC	GRCh37	1	85733425	85733425	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1285	211	1199	0	ENST00000370580.1:c.587G>T	p.Gly196Val	p.G196V	ENST00000370580	NM_003921.4	196	gGg/gTg																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120493350	120493350	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			777	157	796	0	ENST00000256646.2:c.2476A>G	p.Thr826Ala	p.T826A	ENST00000256646	NM_024408.3	826	Aca/Gca																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162724610	162724610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			687	110	671	0	ENST00000367921.3:c.382C>T	p.Arg128Cys	p.R128C	ENST00000367921	NM_006182.2	128	Cgc/Tgc																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25967116	25967116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			355	76	446	0	ENST00000435504.4:c.2090G>T	p.Gly697Val	p.G697V	ENST00000435504		697	gGt/gTt																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142215351	142215351	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			716	157	567	0	ENST00000350721.4:c.5750A>C	p.Asn1917Thr	p.N1917T	ENST00000350721	NM_001184.3	1917	aAt/aCt																																													NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1808308	1808308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			601	114	743	0	ENST00000260795.2:c.2066C>T	p.Thr689Met	p.T689M	ENST00000260795		689	aCg/aTg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49438658	49438658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			590	126	639	1	ENST00000301067.7:c.4832G>A	p.Arg1611Gln	p.R1611Q	ENST00000301067	NM_003482.3	1611	cGg/cAg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49445586	49445586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			717	133	744	0	ENST00000301067.7:c.1880C>T	p.Ser627Phe	p.S627F	ENST00000301067	NM_003482.3	627	tCc/tTc																																													NEWRECORD																																		
FOXO1	2308	MSKCC	GRCh37	13	41134183	41134183	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	180	1064	2	ENST00000379561.5:c.1445C>A	p.Pro482His	p.P482H	ENST00000379561	NM_002015.3	482	cCt/cAt																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110436686	110436686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			514	90	521	1	ENST00000375856.3:c.1715G>A	p.Arg572His	p.R572H	ENST00000375856	NM_003749.2	572	cGc/cAc																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37872017	37872017	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			639	116	683	0	ENST00000269571.5:c.1338A>T	p.Gln446His	p.Q446H	ENST00000269571		446	caA/caT																																													NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40371806	40371806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			340	53	416	0	ENST00000293328.3:c.605C>T	p.Thr202Met	p.T202M	ENST00000293328	NM_012448.3	202	aCg/aTg																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2210834	2210834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			299	40	347	0	ENST00000398665.3:c.1331C>T	p.Thr444Met	p.T444M	ENST00000398665	NM_032482.2	444	aCg/aTg																																													NEWRECORD																																		
ERCC2	2068	MSKCC	GRCh37	19	45856409	45856409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			559	100	607	0	ENST00000391945.4:c.1763G>A	p.Cys588Tyr	p.C588Y	ENST00000391945	NM_000400.3	588	tGc/tAc																																													NEWRECORD																																		
ICOSLG	23308	MSKCC	GRCh37	21	45657002	45657002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			833	123	821	0	ENST00000407780.3:c.154G>A	p.Val52Ile	p.V52I	ENST00000407780	NM_001283052.1	52	Gta/Ata																																													NEWRECORD																																		
NF2	4771	MSKCC	GRCh37	22	30077493	30077493	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			616	113	554	0	ENST00000338641.4:c.1640A>G	p.Glu547Gly	p.E547G	ENST00000338641	NM_000268.3	547	gAg/gGg																																													NEWRECORD																																		
GATA1	2623	MSKCC	GRCh37	X	48652248	48652248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			944	148	997	2	ENST00000376670.3:c.919C>T	p.Arg307Cys	p.R307C	ENST00000376670	NM_002049.3	307	Cgc/Tgc																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76889148	76889148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1117	199	909	2	ENST00000373344.5:c.4862C>T	p.Thr1621Met	p.T1621M	ENST00000373344	NM_000489.3	1621	aCg/aTg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151228	112151229	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			856	140	675	0	ENST00000257430.4:c.875dupT	p.Leu292PhefsTer4	p.L292Ffs*4	ENST00000257430	NM_000038.5	291	gtt/gTtt																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5223239	5223239	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			291	30	309	1	ENST00000357368.4:c.2564del	p.Pro855ArgfsTer67	p.P855Rfs*67	ENST00000357368	NM_002850.3	855	cCg/cg																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48026752	48026753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			524	88	567	0	ENST00000234420.5:c.1635dup	p.Glu546ArgfsTer17	p.E546Rfs*17	ENST00000234420	NM_000179.2	544	gaa/gAaa																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106525	27106526	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0009403-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			957	148	919	0	ENST00000324856.7:c.6137_6138del	p.Val2046GlyfsTer52	p.V2046Gfs*52	ENST00000324856	NM_006015.4	2046	GTg/g																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931588		P-0006505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	279	624	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44833934	44833935	+	stop_gained	Nonsense_Mutation	INS	-	-	AGG			P-0006505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	341	400	0	ENST00000377967.4:c.359_360insGGA	p.Tyr120delinsTer	p.Y120delins*	ENST00000377967	NM_021140.2	120	tac/tAGGac																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0003035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	286	607	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29754956	29754956	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	64	317	0	ENST00000389048.3:c.979G>C	p.Ala327Pro	p.A327P	ENST00000389048	NM_004304.4	327	Gct/Cct																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2983994	2983994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	449	788	0	ENST00000396946.4:c.536G>A	p.Arg179Gln	p.R179Q	ENST00000396946	NM_032415.4	179	cGg/cAg																																													NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50467828	50467828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	253	367	0	ENST00000331340.3:c.1063G>A	p.Ala355Thr	p.A355T	ENST00000331340	NM_006060.4	355	Gcg/Acg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108164101	108164101	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	250	450	0	ENST00000278616.4:c.4673C>A	p.Thr1558Lys	p.T1558K	ENST00000278616	NM_000051.3	1558	aCg/aAg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398260	25398260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	330	587	0	ENST00000256078.4:c.59C>T	p.Thr20Met	p.T20M	ENST00000256078	NM_033360.2	20	aCg/aTg																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95590593	95590593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	353	753	0	ENST00000343455.3:c.1316C>T	p.Thr439Ile	p.T439I	ENST00000343455	NM_177438.2	439	aCc/aTc																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89348684	89348684	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1117	262	1131	0	ENST00000301030.4:c.4266G>T	p.Leu1422Phe	p.L1422F	ENST00000301030	NM_001256183.1	1422	ttG/ttT																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	12016584	12016584	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	120	545	0	ENST00000353533.5:c.720T>A	p.Ser240Arg	p.S240R	ENST00000353533	NM_003010.3	240	agT/agA																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578467	7578468	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	223	405	0	ENST00000269305.4:c.462dup	p.Thr155HisfsTer26	p.T155Hfs*26	ENST00000269305	NM_001126112.2	154	-/C																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002770-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			102	43	368	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0002770-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			157	41	260	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29486094	29486095	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002770-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			217	56	233	0	ENST00000358273.4:c.276dup	p.Cys93MetfsTer14	p.C93Mfs*14	ENST00000358273	NM_001042492.2	91	gaa/gAaa																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	137	348	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	178	311	4	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	287	266	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	201	294	2	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	333	335	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																													NEWRECORD																																		
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	228	396	5	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42794441	42794441	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	273	508	0	ENST00000575354.2:c.1526delC	p.Pro509HisfsTer14	p.P509Hfs*14	ENST00000575354	NM_015125.3	507	cgC/cg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	123	298	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187532678	187532678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	248	511	0	ENST00000441802.2:c.9715G>A	p.Val3239Met	p.V3239M	ENST00000441802	NM_005245.3	3239	Gtg/Atg																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	262	376	1	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	174	347	1	ENST00000575354.2:c.3743delC	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																													NEWRECORD																																		
SRC	6714	MSKCC	GRCh37	20	36028680	36028680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	198	403	0	ENST00000358208.4:c.1022C>T	p.Thr341Met	p.T341M	ENST00000358208		341	aCg/aTg																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	339	582	1	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1272311	1272311	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141425941		P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	220	407	3	ENST00000310581.5:c.2371G>A	p.Val791Ile	p.V791I	ENST00000310581	NM_198253.2	791	Gtc/Atc																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116340097	116340097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35776110		P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	142	273	0	ENST00000397752.3:c.959C>T	p.Ala320Val	p.A320V	ENST00000397752	NM_000245.2	320	gCg/gTg																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151864451	151864451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	118	276	0	ENST00000262189.6:c.9530G>A	p.Arg3177His	p.R3177H	ENST00000262189	NM_170606.2	3177	cGt/cAt																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41727943	41727943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	257	360	0	ENST00000301178.4:c.568C>T	p.Arg190Cys	p.R190C	ENST00000301178	NM_021913.4	190	Cgc/Tgc																																													NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	329	523	2	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120460319	120460319	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	241	426	4	ENST00000256646.2:c.5996del	p.Asn1999MetfsTer32	p.N1999Mfs*32	ENST00000256646	NM_024408.3	1999	aAt/at																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10250425	10250425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	218	417	1	ENST00000340748.4:c.3827G>A	p.Arg1276His	p.R1276H	ENST00000340748		1276	cGc/cAc																																													NEWRECORD																																		
IKBKE	9641	MSKCC	GRCh37	1	206652329	206652330	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	51	464	1	ENST00000367120.3:c.1042dup	p.Arg348ProfsTer8	p.R348Pfs*8	ENST00000367120	NM_014002.3	346	gcc/gCcc																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9520141	9520141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	203	422	0	ENST00000353224.5:c.2128G>A	p.Val710Ile	p.V710I	ENST00000353224	NM_177990.2	710	Gtc/Atc																																													NEWRECORD																																		
RAD54L	8438	MSKCC	GRCh37	1	46739880	46739880	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	282	500	0	ENST00000371975.4:c.1681A>G	p.Ser561Gly	p.S561G	ENST00000371975	NM_003579.3	561	Agt/Ggt																																													NEWRECORD																																		
JUN	3725	MSKCC	GRCh37	1	59247883	59247883	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	415	540	0	ENST00000371222.2:c.860T>C	p.Leu287Ser	p.L287S	ENST00000371222	NM_002228.3	287	tTg/tCg																																													NEWRECORD																																		
ERCC3	2071	MSKCC	GRCh37	2	128015225	128015225	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	69	418	0	ENST00000285398.2:c.2296A>G	p.Ser766Gly	p.S766G	ENST00000285398	NM_000122.1	766	Agc/Ggc																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202149593	202149593	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	441	390	0	ENST00000358485.4:c.1034A>G	p.Asp345Gly	p.D345G	ENST00000358485	NM_001080125.1	345	gAc/gGc																																													NEWRECORD																																		
SHQ1	55164	MSKCC	GRCh37	3	72893525	72893525	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	195	461	0	ENST00000325599.8:c.193T>C	p.Tyr65His	p.Y65H	ENST00000325599	NM_018130.2	65	Tat/Cat																																													NEWRECORD																																		
FOXL2	668	MSKCC	GRCh37	3	138664475	138664475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	147	213	1	ENST00000330315.3:c.1090G>A	p.Asp364Asn	p.D364N	ENST00000330315	NM_023067.3	364	Gac/Aac																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153250896	153250896	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	197	373	1	ENST00000281708.4:c.1164G>T	p.Gln388His	p.Q388H	ENST00000281708	NM_033632.3	388	caG/caT																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295329	1295329	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	166	270	1				ENST00000310581	NM_198253.2																																															NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176722324	176722324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	41	381	0	ENST00000439151.2:c.7955C>T	p.Ala2652Val	p.A2652V	ENST00000439151	NM_022455.4	2652	gCt/gTt																																													NEWRECORD																																		
CDKN1A	1026	MSKCC	GRCh37	6	36651985	36651985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	215	364	0	ENST00000244741.5:c.107C>T	p.Ala36Val	p.A36V	ENST00000244741	NM_000389.4	36	gCg/gTg																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	93969151	93969151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	282	564	1	ENST00000369303.4:c.1845G>T	p.Glu615Asp	p.E615D	ENST00000369303	NM_004440.3	615	gaG/gaT																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	93982054	93982054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	271	541	0	ENST00000369303.4:c.1411G>A	p.Gly471Arg	p.G471R	ENST00000369303	NM_004440.3	471	Gga/Aga																																													NEWRECORD																																		
INHBA	3624	MSKCC	GRCh37	7	41739671	41739671	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	305	583	0	ENST00000242208.4:c.302T>C	p.Val101Ala	p.V101A	ENST00000242208	NM_002192.2	101	gTg/gCg																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106513305	106513305	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	167	368	0	ENST00000359195.3:c.2209C>A	p.Gln737Lys	p.Q737K	ENST00000359195	NM_002649.2	737	Caa/Aaa																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	152055719	152055719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	296	591	2	ENST00000262189.6:c.203G>T	p.Ser68Ile	p.S68I	ENST00000262189	NM_170606.2	68	aGc/aTc																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98215773	98215773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	214	358	1	ENST00000331920.6:c.3436G>A	p.Asp1146Asn	p.D1146N	ENST00000331920	NM_000264.3	1146	Gac/Aac																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139402723	139402723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	42	347	0	ENST00000277541.6:c.3286G>A	p.Val1096Met	p.V1096M	ENST00000277541	NM_017617.3	1096	Gtg/Atg																																													NEWRECORD																																		
MYOD1	4654	MSKCC	GRCh37	11	17741604	17741604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	85	119	0	ENST00000250003.3:c.275G>A	p.Arg92His	p.R92H	ENST00000250003	NM_002478.4	92	cGc/cAc																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108188247	108188247	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	131	260	0	ENST00000278616.4:c.6346A>C	p.Ser2116Arg	p.S2116R	ENST00000278616	NM_000051.3	2116	Agc/Cgc																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49431760	49431760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	44	341	0	ENST00000301067.7:c.9379C>T	p.Arg3127Cys	p.R3127C	ENST00000301067	NM_003482.3	3127	Cgc/Tgc																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2138499	2138499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	321	533	0	ENST00000219476.3:c.5312C>T	p.Pro1771Leu	p.P1771L	ENST00000219476	NM_000548.3	1771	cCg/cTg																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81960687	81960687	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	262	489	0	ENST00000359376.3:c.2418G>A	p.Trp806Ter	p.W806*	ENST00000359376	NM_002661.3	806	tgG/tgA																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89350353	89350353	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1237	111	612	0	ENST00000301030.4:c.2597G>T	p.Arg866Met	p.R866M	ENST00000301030	NM_001256183.1	866	aGg/aTg																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15295797	15295797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	295	432	1	ENST00000263388.2:c.2330C>T	p.Pro777Leu	p.P777L	ENST00000263388	NM_000435.2	777	cCg/cTg																																													NEWRECORD																																		
ERCC2	2068	MSKCC	GRCh37	19	45872384	45872384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	216	368	0	ENST00000391945.4:c.127C>T	p.Pro43Ser	p.P43S	ENST00000391945	NM_000400.3	43	Ccc/Tcc																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76937521	76937521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	30	400	0	ENST00000373344.5:c.3227C>A	p.Ser1076Tyr	p.S1076Y	ENST00000373344	NM_000489.3	1076	tCt/tAt																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133225574	133225574	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	225	464	0	ENST00000320574.5:c.4090del	p.Arg1364ValfsTer5	p.R1364Vfs*5	ENST00000320574	NM_006231.2	1364	Cgt/gt																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49433960	49433960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	43	315	0	ENST00000301067.7:c.7593del	p.Ser2532LeufsTer11	p.S2532Lfs*11	ENST00000301067	NM_003482.3	2531	ccC/cc																																													NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90967511	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	202	326	0	ENST00000265433.3:c.1396dup	p.Arg466LysfsTer5	p.R466Kfs*5	ENST00000265433	NM_002485.4	466	agg/aAgg																																													NEWRECORD																																		
ZRSR2	8233	MSKCC	GRCh37	X	15821896	15821896	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1195	65	608	0	ENST00000307771.7:c.294del	p.Lys98AsnfsTer10	p.K98Nfs*10	ENST00000307771	NM_005089.3	97	Aaa/aa																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119070	70119071	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	G			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	95	221	0	ENST00000245479.2:c.642_643delinsG	p.Ser215ProfsTer4	p.S215Pfs*4	ENST00000245479	NM_000346.3	214	tcCTcc/tcGcc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0008370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	864	502	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																													NEWRECORD																																		
NFE2L2	4780	MSKCC	GRCh37	2	178098957	178098957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	118	400	0	ENST00000397062.3:c.88C>T	p.Leu30Phe	p.L30F	ENST00000397062	NM_006164.4	30	Ctt/Ttt																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36231773	36231773	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	133	545	1	ENST00000300305.3:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000300305		204	cGa/cAa																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435312	56435312	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139405076		P-0008370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	110	254	0	ENST00000407977.2:c.1825C>T	p.Arg609Trp	p.R609W	ENST00000407977		609	Cgg/Tgg																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67482858	67482858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	90	361	0	ENST00000327367.4:c.1262G>A	p.Cys421Tyr	p.C421Y	ENST00000327367	NM_005902.3	421	tGt/tAt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023637	27023638	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTCCAAGCCGC			P-0008370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	69	268	0	ENST00000324856.7:c.743_744insTTCCAAGCCGC	p.Ser255ArgfsTer112	p.S255Rfs*112	ENST00000324856	NM_006015.4	248	ggc/ggTTCCAAGCCGCc																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36171672	36171672	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	103	442	0	ENST00000300305.3:c.893del	p.Pro298GlnfsTer13	p.P298Qfs*13	ENST00000300305		298	cCa/ca																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1568	215	530	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1223	509	753	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	353	574	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162748502	162748502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	11	340	1	ENST00000367921.3:c.2416C>T	p.Arg806Ter	p.R806*	ENST00000367921	NM_006182.2	806	Cga/Tga																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27107046	27107047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	151	390	0	ENST00000324856.7:c.6659dup	p.Asn2220LysfsTer5	p.N2220Kfs*5	ENST00000324856	NM_006015.4	2219	-/A																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46244824	46244824	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	132	751	0	ENST00000334344.6:c.2918C>G	p.Ser973Ter	p.S973*	ENST00000334344	NM_152641.2	973	tCa/tGa																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46246668	46246668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	28	168	0	ENST00000334344.6:c.4762G>A	p.Val1588Met	p.V1588M	ENST00000334344	NM_152641.2	1588	Gtg/Atg																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115118782	115118783	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	92	550	0	ENST00000257566.3:c.558dup	p.His187SerfsTer40	p.H187Sfs*40	ENST00000257566	NM_016569.3	186	-/T																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99451941	99451941	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	132	436	0	ENST00000268035.6:c.1275C>G	p.Asn425Lys	p.N425K	ENST00000268035	NM_000875.3	425	aaC/aaG																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89877455	89877455	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1664	92	785	0	ENST00000389301.3:c.308C>G	p.Ser103Ter	p.S103*	ENST00000389301	NM_000135.2	103	tCa/tGa																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187628392	187628392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	51	693	1	ENST00000441802.2:c.2590G>A	p.Asp864Asn	p.D864N	ENST00000441802	NM_005245.3	864	Gac/Aac																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56178310	56178310	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	51	369	0	ENST00000399503.3:c.3285del	p.Phe1095LeufsTer22	p.F1095Lfs*22	ENST00000399503	NM_005921.1	1095	Ttt/tt																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2976741	2976741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1951	290	714	0	ENST00000396946.4:c.1271G>A	p.Arg424Gln	p.R424Q	ENST00000396946	NM_032415.4	424	cGg/cAg																																													NEWRECORD																																		
RAC1	5879	MSKCC	GRCh37	7	6441589	6441589	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	68	231	0	ENST00000356142.4:c.436G>C	p.Glu146Gln	p.E146Q	ENST00000356142	NM_018890.3	146	Gag/Cag																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140481390	140481390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	37	377	0	ENST00000288602.6:c.1418A>T	p.Lys473Met	p.K473M	ENST00000288602	NM_004333.4	473	aAg/aTg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	429	685	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25469603	25469603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1571	269	751	0	ENST00000264709.3:c.1165G>A	p.Asp389Asn	p.D389N	ENST00000264709	NM_175629.2	389	Gac/Aac																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115985	8115989	+	coding_sequence_variant,3_prime_UTR_variant	Frame_Shift_Del	DEL	AGAGC	AGAGC	-			P-0014954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	104	311	0	ENST00000346208.3:c.1331_*3delAGAGC		p.*444fs*	ENST00000346208		444																																														NEWRECORD																																		
RARA	5914	MSKCC	GRCh37	17	38512297	38512298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	63	786	0	ENST00000254066.5:c.1211dup	p.Ser405LeufsTer41	p.S405Lfs*41	ENST00000254066	NM_000964.3	403	ccg/ccGg																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176637714	176637714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1385	311	815	0	ENST00000439151.2:c.2314G>T	p.Ala772Ser	p.A772S	ENST00000439151	NM_022455.4	772	Gca/Tca																																													NEWRECORD																																		
FGFR1	2260	MSKCC	GRCh37	8	38287398	38287398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2380	214	660	0	ENST00000425967.3:c.259C>T	p.Arg87Cys	p.R87C	ENST00000425967	NM_001174067.1	87	Cgc/Tgc																																													NEWRECORD																																		
JAK2	3717	MSKCC	GRCh37	9	5044450	5044450	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	226	718	0	ENST00000381652.3:c.399del	p.His134MetfsTer33	p.H134Mfs*33	ENST00000381652	NM_004972.3	133	cGg/cg																																													NEWRECORD																																		
FGF4	2249	MSKCC	GRCh37	11	69588238	69588241	+	missense_variant	Missense_Mutation	ONP	CATC	CATC	GATT			P-0014954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1132	165	469	0	ENST00000168712.1:c.457_460delinsAATC	p.Asp153_Glu154delinsAsnGln	p.D153_E154delinsNQ	ENST00000168712	NM_002007.2	153	GATGag/AATCag																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	103	201	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115115427	115115427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	159	435	0	ENST00000257566.3:c.899C>T	p.Ala300Val	p.A300V	ENST00000257566	NM_016569.3	300	gCa/gTa																																													NEWRECORD																																		
TMPRSS2	7113	MSKCC	GRCh37	21	42845298	42845298	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	63	308	0	ENST00000398585.3:c.964A>G	p.Ile322Val	p.I322V	ENST00000398585	NM_001135099.1	322	Atc/Gtc																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115118599	115118684	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGCTGAAACTCATGAAATGGGAAGCACTGCCTTTGACTGAGTGAAGGAGGAGAAAATTTTACTGAAGAGAGCAATGAAACTTACA	GGGCTGAAACTCATGAAATGGGAAGCACTGCCTTTGACTGAGTGAAGGAGGAGAAAATTTTACTGAAGAGAGCAATGAAACTTACA	-			P-0004406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	66	153	0	ENST00000257566.3:c.657_657+85del		p.X219_splice	ENST00000257566	NM_016569.3	219																																														NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68842612	68842613	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	138	368	0	ENST00000261769.5:c.549dup	p.Lys184GlnfsTer15	p.K184Qfs*15	ENST00000261769	NM_004360.3	183	gac/gaCc																																													NEWRECORD																																		
H3F3A	3020	MSKCC	GRCh37	1	226253418	226253419	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0004406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	23	75	0	ENST00000366813.1:c.191_192del	p.Arg64GlnfsTer16	p.R64Qfs*16	ENST00000366813		64	CGc/c																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	220	254	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0013187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	309	526	0	ENST00000269305.4:c.560-2A>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																														NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48954315	48954317	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0013187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	109	297	0	ENST00000267163.4:c.1439_1441del	p.Asn480del	p.N480del	ENST00000267163	NM_000321.2	479	gACAac/gac																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36252852	36252853	+	splice_donor_variant	Splice_Site	INS	-	-	CCTCTT			P-0013187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	225	433	0	ENST00000300305.3:c.504_508+1dup		p.X168_splice	ENST00000300305		168																																														NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0012974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	118	224	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0012974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	252	284	1	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																													NEWRECORD																																		
PARP1	142	MSKCC	GRCh37	1	226567643	226567643	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	198	337	2	ENST00000366794.5:c.1523A>C	p.Lys508Thr	p.K508T	ENST00000366794	NM_001618.3	508	aAg/aCg																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134880962	134880962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	205	287	0	ENST00000398015.3:c.1525C>T	p.Arg509Cys	p.R509C	ENST00000398015	NM_004441.4	509	Cgc/Tgc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174098	112174098	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	177	294	1	ENST00000257430.4:c.2807A>G	p.Asn936Ser	p.N936S	ENST00000257430	NM_000038.5	936	aAt/aGt																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70117614	70117614	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	527	342	1	ENST00000245479.2:c.82G>T	p.Glu28Ter	p.E28*	ENST00000245479	NM_000346.3	28	Gag/Tag																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15281517	15281517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	238	444	2	ENST00000263388.2:c.4856G>A	p.Arg1619His	p.R1619H	ENST00000263388	NM_000435.2	1619	cGc/cAc																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	12013728	12013728	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	147	263	0	ENST00000353533.5:c.673del	p.Ile225LeufsTer51	p.I225Lfs*51	ENST00000353533	NM_003010.3	224	Aaa/aa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175171	112175172	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0012974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	89	158	0	ENST00000257430.4:c.3881_3882insAA	p.Glu1295ArgfsTer11	p.E1295Rfs*11	ENST00000257430	NM_000038.5	1294	cag/cAAag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	157	397	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	44	442	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11259674	11259674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	78	371	0	ENST00000361445.4:c.4031C>T	p.Ala1344Val	p.A1344V	ENST00000361445	NM_004958.3	1344	gCc/gTc																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68835780	68835781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	118	420	0	ENST00000261769.5:c.377dup	p.Pro127AlafsTer41	p.P127Afs*41	ENST00000261769	NM_004360.3	124	cgc/cgCc																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180053023	180053023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	45	386	0	ENST00000261937.6:c.1267delC	p.Gln423ArgfsTer70	p.Q423Rfs*70	ENST00000261937	NM_182925.4	423	Cag/ag																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	262	540	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																													NEWRECORD																																		
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	151	233	0	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49418718	49418718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	65	236	0	ENST00000301067.7:c.15796C>T	p.Arg5266Cys	p.R5266C	ENST00000301067	NM_003482.3	5266	Cgc/Tgc																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64577290	64577290	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	45	456	1	ENST00000337652.1:c.292C>T	p.Arg98Ter	p.R98*	ENST00000337652	NM_130803.2	98	Cga/Tga																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41743896	41743896	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	212	489	0	ENST00000301178.4:c.836delC	p.Pro279GlnfsTer18	p.P279Qfs*18	ENST00000301178	NM_021913.4	277	gaC/ga																																													NEWRECORD																																		
NUP93	9688	MSKCC	GRCh37	16	56782275	56782275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	143	560	3	ENST00000308159.5:c.116C>T	p.Ala39Val	p.A39V	ENST00000308159	NM_014669.4	39	gCg/gTg																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16202858	16202858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	136	417	0	ENST00000375759.3:c.566G>A	p.Arg189Gln	p.R189Q	ENST00000375759	NM_015001.2	189	cGa/cAa																																													NEWRECORD																																		
IKBKE	9641	MSKCC	GRCh37	1	206649592	206649592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	132	343	1	ENST00000367120.3:c.427C>T	p.Arg143Cys	p.R143C	ENST00000367120	NM_014002.3	143	Cgc/Tgc																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48028285	48028285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	97	318	0	ENST00000234420.5:c.3163G>A	p.Ala1055Thr	p.A1055T	ENST00000234420	NM_000179.2	1055	Gca/Aca																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198265061	198265061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	196	401	0	ENST00000335508.6:c.2816G>A	p.Arg939His	p.R939H	ENST00000335508	NM_012433.2	939	cGt/cAt																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227663034	227663034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	115	292	0	ENST00000305123.5:c.421G>A	p.Gly141Ser	p.G141S	ENST00000305123	NM_005544.2	141	Ggc/Agc																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71247373	71247373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	39	317	1	ENST00000318789.4:c.160G>A	p.Ala54Thr	p.A54T	ENST00000318789	NM_032682.5	54	Gcc/Acc																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89480469	89480469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	81	388	1	ENST00000336596.2:c.2306G>A	p.Arg769His	p.R769H	ENST00000336596	NM_005233.5	769	cGt/cAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112178228	112178228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	129	549	0	ENST00000257430.4:c.6937G>A	p.Ala2313Thr	p.A2313T	ENST00000257430	NM_000038.5	2313	Gcc/Acc																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176638697	176638697	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	114	485	0	ENST00000439151.2:c.3297T>G	p.Ser1099Arg	p.S1099R	ENST00000439151	NM_022455.4	1099	agT/agG																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176696757	176696757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	127	421	1	ENST00000439151.2:c.5458G>A	p.Val1820Met	p.V1820M	ENST00000439151	NM_022455.4	1820	Gtg/Atg																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30682856	30682856	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113702536		P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	503	672	1	ENST00000376406.3:c.97C>T	p.Arg33Trp	p.R33W	ENST00000376406	NM_014641.2	33	Cgg/Tgg																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106509063	106509063	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	73	383	0	ENST00000359195.3:c.1057T>C	p.Ser353Pro	p.S353P	ENST00000359195	NM_002649.2	353	Tcc/Ccc																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128845233	128845233	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	30	217	0	ENST00000249373.3:c.727C>A	p.Leu243Ile	p.L243I	ENST00000249373	NM_005631.4	243	Ctc/Atc																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151845190	151845190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	126	450	0	ENST00000262189.6:c.13822C>T	p.Arg4608Cys	p.R4608C	ENST00000262189	NM_170606.2	4608	Cgc/Tgc																																													NEWRECORD																																		
NKX3-1	4824	MSKCC	GRCh37	8	23540288	23540288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	57	245	0	ENST00000380871.4:c.115G>A	p.Ala39Thr	p.A39T	ENST00000380871	NM_006167.3	39	Gcg/Acg																																													NEWRECORD																																		
RAD21	5885	MSKCC	GRCh37	8	117878944	117878944	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	128	593	0	ENST00000297338.2:c.25A>G	p.Ser9Gly	p.S9G	ENST00000297338	NM_006265.2	9	Agt/Ggt																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64574661	64574661	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149783078		P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	34	321	0	ENST00000337652.1:c.829C>T	p.His277Tyr	p.H277Y	ENST00000337652	NM_130803.2	277	Cat/Tat																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108124701	108124701	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	73	448	0	ENST00000278616.4:c.2059A>G	p.Lys687Glu	p.K687E	ENST00000278616	NM_000051.3	687	Aag/Gag																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46245621	46245621	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	97	516	0	ENST00000334344.6:c.3715G>T	p.Gly1239Cys	p.G1239C	ENST00000334344	NM_152641.2	1239	Ggt/Tgt																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115115398	115115398	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	540	611	0	ENST00000257566.3:c.928C>T	p.Arg310Ter	p.R310*	ENST00000257566	NM_016569.3	310	Cga/Tga																																													NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28601297	28601297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1188	98	633	0	ENST00000241453.7:c.2135G>A	p.Arg712Lys	p.R712K	ENST00000241453	NM_004119.2	712	aGg/aAg																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3801727	3801727	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	80	447	0	ENST00000262367.5:c.3779C>T	p.Thr1260Met	p.T1260M	ENST00000262367	NM_004380.2	1260	aCg/aTg																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68771320	68771320	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	37	229	0	ENST00000261769.5:c.2T>C	p.Met1?	p.M1?	ENST00000261769	NM_004360.3	1	aTg/aCg																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72821829	72821829	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140437495		P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1079	158	719	2	ENST00000268489.5:c.10346C>T	p.Ala3449Val	p.A3449V	ENST00000268489	NM_006885.3	3449	gCg/gTg																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72822274	72822274	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	207	744	0	ENST00000268489.5:c.9901G>T	p.Ala3301Ser	p.A3301S	ENST00000268489	NM_006885.3	3301	Gca/Tca																																													NEWRECORD																																		
GPS2	2874	MSKCC	GRCh37	17	7216731	7216731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	110	667	0	ENST00000380728.2:c.692C>T	p.Ala231Val	p.A231V	ENST00000380728		231	gCt/gTt																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37879819	37879819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	131	315	1	ENST00000269571.5:c.2114C>T	p.Ala705Val	p.A705V	ENST00000269571		705	gCg/gTg																																													NEWRECORD																																		
STAT3	6774	MSKCC	GRCh37	17	40475607	40475607	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	182	694	4	ENST00000264657.5:c.1637G>T	p.Trp546Leu	p.W546L	ENST00000264657	NM_139276.2	546	tGg/tTg																																													NEWRECORD																																		
SPOP	8405	MSKCC	GRCh37	17	47696682	47696682	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	160	546	0	ENST00000347630.2:c.266T>C	p.Leu89Ser	p.L89S	ENST00000347630	NM_001007230.1	89	tTa/tCa																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59878691	59878691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	155	582	0	ENST00000259008.2:c.1063G>A	p.Ala355Thr	p.A355T	ENST00000259008	NM_032043.2	355	Gcc/Acc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5238951	5238951	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1237159914		P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	113	311	1	ENST00000357368.4:c.1828C>T	p.Arg610Trp	p.R610W	ENST00000357368	NM_002850.3	610	Cgg/Tgg																																													NEWRECORD																																		
CCNE1	898	MSKCC	GRCh37	19	30303922	30303922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	140	317	1	ENST00000262643.3:c.158C>T	p.Ala53Val	p.A53V	ENST00000262643	NM_001238.2	53	gCg/gTg																																													NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31388006	31388006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1150	120	533	1	ENST00000328111.2:c.1807G>A	p.Ala603Thr	p.A603T	ENST00000328111	NM_006892.3	603	Gct/Act																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36206814	36206814	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150042294		P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	71	239	1	ENST00000300305.3:c.698G>A	p.Arg233His	p.R233H	ENST00000300305		233	cGc/cAc																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41574489	41574489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	91	360	2	ENST00000263253.7:c.6774G>T	p.Gln2258His	p.Q2258H	ENST00000263253	NM_001429.3	2258	caG/caT																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44929238	44929238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	108	638	1	ENST00000377967.4:c.2338C>T	p.Leu780Phe	p.L780F	ENST00000377967	NM_021140.2	780	Ctc/Ttc																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53223548	53223548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	40	232	0	ENST00000375401.3:c.3811C>T	p.Arg1271Trp	p.R1271W	ENST00000375401	NM_004187.3	1271	Cgg/Tgg																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66937402	66937402	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	163	652	0	ENST00000374690.3:c.2256G>A	p.Trp752Ter	p.W752*	ENST00000374690	NM_000044.3	752	tgG/tgA																																													NEWRECORD																																		
U2AF1	7307	MSKCC	GRCh37	21	44514671	44514672	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	117	331	0	ENST00000291552.4:c.484_485del	p.Glu162MetfsTer32	p.E162Mfs*32	ENST00000291552	NM_006758.2	162	GAa/a																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971026	21971026	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	38	305	0	ENST00000304494.5:c.332del	p.Gly111AlafsTer35	p.G111Afs*35	ENST00000304494	NM_000077.4	111	gGc/gc																																													NEWRECORD																																		
CALR	811	MSKCC	GRCh37	19	13050034	13050036	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1140	246	601	1	ENST00000316448.5:c.181_183del	p.Glu61del	p.E61del	ENST00000316448	NM_004343.3	60	GAG/-																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2962854	2962854	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	58	401	1	ENST00000396946.4:c.2054delG	p.Gly685AlafsTer31	p.G685Afs*31	ENST00000396946	NM_032415.4	685	gGc/gc																																													NEWRECORD																																		
PMS2	5395	MSKCC	GRCh37	7	6043349	6043349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	52	170	1	ENST00000265849.7:c.325del	p.Glu109LysfsTer3	p.E109Kfs*3	ENST00000265849	NM_000535.5	109	Gaa/aa																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98224251	98224251	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	61	358	0	ENST00000331920.6:c.2590del	p.Glu864LysfsTer39	p.E864Kfs*39	ENST00000331920	NM_000264.3	864	Gaa/aa																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118343529	118343529	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	53	328	2	ENST00000534358.1:c.1660del	p.Gln554SerfsTer13	p.Q554Sfs*13	ENST00000534358	NM_005933.3	552	gCc/gc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173837	112173838	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	171	415	0	ENST00000257430.4:c.2547_2548del	p.Asp849GlufsTer62	p.D849Efs*62	ENST00000257430	NM_000038.5	849	gAT/g																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15989668	15989669	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	56	378	0	ENST00000268712.3:c.3104dup	p.Leu1036SerfsTer35	p.L1036Sfs*35	ENST00000268712	NM_006311.3	1035	cct/ccCt																																													NEWRECORD																																		
XIAP	331	MSKCC	GRCh37	X	123040836	123040837	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	192	487	0	ENST00000355640.3:c.1302_1303del		p.X434_splice	ENST00000355640		434																																														NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	811	288	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32906916	32906919	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-	rs80359279		P-0012505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	191	171	0	ENST00000380152.3:c.1310_1313delAAGA	p.Lys437IlefsTer22	p.K437Ifs*22	ENST00000380152		434	aAAAGa/aa																																													NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	354393	354393	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1488869543		P-0012505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	328	432	0	ENST00000262320.3:c.1165G>A	p.Ala389Thr	p.A389T	ENST00000262320	NM_003502.3	389	Gcg/Acg																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72830265	72830265	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	580	509	0	ENST00000268489.5:c.6316C>G	p.Pro2106Ala	p.P2106A	ENST00000268489	NM_006885.3	2106	Ccg/Gcg																																													NEWRECORD																																		
TOP1	7150	MSKCC	GRCh37	20	39713150	39713150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	133	212	1	ENST00000361337.2:c.556C>T	p.Pro186Ser	p.P186S	ENST00000361337	NM_003286.2	186	Cct/Tct																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70344629	70344629	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1200	276	533	0	ENST00000374080.3:c.1990G>C	p.Glu664Gln	p.E664Q	ENST00000374080		664	Gaa/Caa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577097	7577121	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTCCCAGGACAGGCACAAACACG	CTCTCCCAGGACAGGCACAAACACG	-			P-0012505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	575	439	0	ENST00000269305.4:c.817_841del	p.Arg273ThrfsTer64	p.R273Tfs*64	ENST00000269305	NM_001126112.2	273	CGTGTTTGTGCCTGTCCTGGGAGAGac/ac																																													NEWRECORD																																		
MAX	4149	MSKCC	GRCh37	14	65560425	65560432	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CCTTCTCT	CCTTCTCT	-			P-0012505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	246	300	0	ENST00000358664.4:c.165_171+1del		p.X55_splice	ENST00000358664	NM_002382.4	55																																														NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32906919	32906923	+	protein_altering_variant	In_Frame_Ins	INS	GAAAG	GAAAG	AGAAAAGA			P-0012505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	64	174	0	ENST00000380152.3:c.1304_1308delinsAGAAAAGA	p.Arg435_Lys436delinsLysLysArg	p.R435_K436delinsKKR	ENST00000380152		435	aGAAAG/aAGAAAAGA																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0013306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	139	699	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0013306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	258	649	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	92	540	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																													NEWRECORD																																		
CDC73	79577	MSKCC	GRCh37	1	193202215	193202215	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	311	608	0	ENST00000367435.3:c.1247G>C	p.Gly416Ala	p.G416A	ENST00000367435	NM_024529.4	416	gGc/gCc																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212426668	212426668	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	182	657	0	ENST00000342788.4:c.2447G>C	p.Gly816Ala	p.G816A	ENST00000342788	NM_005235.2	816	gGa/gCa																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212426680	212426680	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	193	694	0	ENST00000342788.4:c.2435A>G	p.Lys812Arg	p.K812R	ENST00000342788	NM_005235.2	812	aAg/aGg																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142177826	142177826	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	98	476	1	ENST00000350721.4:c.7477G>T	p.Val2493Leu	p.V2493L	ENST00000350721	NM_001184.3	2493	Gta/Tta																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43606887	43606887	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	53	276	0	ENST00000355710.3:c.1496A>T	p.Gln499Leu	p.Q499L	ENST00000355710	NM_020975.4	499	cAg/cTg																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88472661	88472661	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	114	307	0	ENST00000360948.2:c.1894C>A	p.His632Asn	p.H632N	ENST00000360948	NM_001012338.2	632	Cat/Aat																																													NEWRECORD																																		
SOX2	6657	MSKCC	GRCh37	3	181430639	181430640	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGC			P-0013306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	54	342	0	ENST00000325404.1:c.493_494insCCG	p.Asn164_Gly165insAla	p.N164_G165insA	ENST00000325404	NM_003106.3	164	aac/aaCGCc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0004977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	176	282	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0004977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	45	268	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	103	246	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180049782	180049782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	72	439	0	ENST00000261937.6:c.1606G>A	p.Val536Ile	p.V536I	ENST00000261937	NM_182925.4	536	Gtc/Atc																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8485774	8485774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	110	260	0	ENST00000356435.5:c.3043C>T	p.Pro1015Ser	p.P1015S	ENST00000356435		1015	Cct/Tct																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15298024	15298024	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	92	387	0	ENST00000263388.2:c.1732C>A	p.Arg578Ser	p.R578S	ENST00000263388	NM_000435.2	578	Cgc/Agc																																													NEWRECORD																																		
ZRSR2	8233	MSKCC	GRCh37	X	15827437	15827437	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	46	175	0	ENST00000307771.7:c.553G>T	p.Asp185Tyr	p.D185Y	ENST00000307771	NM_005089.3	185	Gat/Tat																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76937705	76937705	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	119	187	0	ENST00000373344.5:c.3043G>C	p.Gly1015Arg	p.G1015R	ENST00000373344	NM_000489.3	1015	Ggc/Cgc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173689	112173690	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	52	251	0	ENST00000257430.4:c.2403dupT	p.Asp802Ter	p.D802*	ENST00000257430	NM_000038.5	800	gtt/gTtt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782177		P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	83	461	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																													NEWRECORD																																		
CSF1R	1436	MSKCC	GRCh37	5	149449582	149449582	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	69	356	0	ENST00000286301.3:c.1364C>A	p.Pro455His	p.P455H	ENST00000286301	NM_005211.3	455	cCt/cAt																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25470480	25470480	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	49	345	0	ENST00000264709.3:c.994G>T	p.Gly332Ter	p.G332*	ENST00000264709	NM_175629.2	332	Gga/Tga																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	30143404	30143404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	16	119	0	ENST00000389048.3:c.122G>T	p.Arg41Leu	p.R41L	ENST00000389048	NM_004304.4	41	cGg/cTg																																													NEWRECORD																																		
REL	5966	MSKCC	GRCh37	2	61128200	61128200	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	46	109	0	ENST00000295025.8:c.376G>T	p.Gly126Ter	p.G126*	ENST00000295025	NM_002908.2	126	Gga/Tga																																													NEWRECORD																																		
REL	5966	MSKCC	GRCh37	2	61145682	61145682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	58	280	0	ENST00000295025.8:c.794G>T	p.Arg265Ile	p.R265I	ENST00000295025	NM_002908.2	265	aGa/aTa																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198274712	198274712	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	76	242	0	ENST00000335508.6:c.686C>A	p.Ser229Tyr	p.S229Y	ENST00000335508	NM_012433.2	229	tCc/tAc																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227662133	227662133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	34	313	0	ENST00000305123.5:c.1322C>A	p.Ser441Tyr	p.S441Y	ENST00000305123	NM_005544.2	441	tCc/tAc																																													NEWRECORD																																		
BAP1	8314	MSKCC	GRCh37	3	52443571	52443571	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	39	294	1	ENST00000460680.1:c.121G>T	p.Gly41Cys	p.G41C	ENST00000460680	NM_004656.3	41	Ggc/Tgc																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55981462	55981462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	98	267	0	ENST00000263923.4:c.475G>T	p.Val159Leu	p.V159L	ENST00000263923	NM_002253.2	159	Gtg/Ttg																																													NEWRECORD																																		
FGFR4	2264	MSKCC	GRCh37	5	176519785	176519785	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	57	351	0	ENST00000292408.4:c.1057G>T	p.Glu353Ter	p.E353*	ENST00000292408	NM_213647.1	353	Gag/Tag																																													NEWRECORD																																		
CDKN1A	1026	MSKCC	GRCh37	6	36652251	36652251	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	49	233	0	ENST00000244741.5:c.373G>T	p.Glu125Ter	p.E125*	ENST00000244741	NM_000389.4	125	Gag/Tag																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	94120364	94120364	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	99	531	0	ENST00000369303.4:c.687G>T	p.Glu229Asp	p.E229D	ENST00000369303	NM_004440.3	229	gaG/gaT																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117630000	117630000	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	32	302	0	ENST00000368508.3:c.6526A>G	p.Thr2176Ala	p.T2176A	ENST00000368508	NM_002944.2	2176	Aca/Gca																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157405902	157405902	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	29	278	0	ENST00000346085.5:c.2144C>G	p.Pro715Arg	p.P715R	ENST00000346085	NM_020732.3	715	cCg/cGg																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55272994	55272994	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	164	378	0	ENST00000275493.2:c.3317A>T	p.Gln1106Leu	p.Q1106L	ENST00000275493	NM_005228.3	1106	cAg/cTg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139391728	139391728	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	18	303	0	ENST00000277541.6:c.6463G>T	p.Gly2155Cys	p.G2155C	ENST00000277541	NM_017617.3	2155	Ggc/Tgc																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43604633	43604633	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	31	327	0	ENST00000355710.3:c.1218T>A	p.Ser406Arg	p.S406R	ENST00000355710	NM_020975.4	406	agT/agA																																													NEWRECORD																																		
CBL	867	MSKCC	GRCh37	11	119148875	119148875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	71	157	0	ENST00000264033.4:c.1096-1G>T		p.X366_splice	ENST00000264033	NM_005188.3	366																																														NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18491387	18491387	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	55	197	0	ENST00000266497.5:c.1300G>T	p.Val434Phe	p.V434F	ENST00000266497		434	Gtt/Ttt																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18691196	18691196	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	44	266	0	ENST00000266497.5:c.3307T>A	p.Tyr1103Asn	p.Y1103N	ENST00000266497		1103	Tat/Aat																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115112526	115112526	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	63	312	0	ENST00000257566.3:c.1214G>T	p.Arg405Leu	p.R405L	ENST00000257566	NM_016569.3	405	cGt/cTt																																													NEWRECORD																																		
HNF1A	6927	MSKCC	GRCh37	12	121432205	121432205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	34	220	0	ENST00000257555.6:c.952C>A	p.His318Asn	p.H318N	ENST00000257555		318	Cac/Aac																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	29008057	29008057	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	59	226	0	ENST00000282397.4:c.712C>A	p.Arg238Ser	p.R238S	ENST00000282397	NM_002019.4	238	Cgc/Agc																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	29012474	29012474	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	59	194	1	ENST00000282397.4:c.397A>T	p.Arg133Ter	p.R133*	ENST00000282397	NM_002019.4	133	Aga/Tga																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88727529	88727529	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	39	197	0	ENST00000360948.2:c.250C>A	p.His84Asn	p.H84N	ENST00000360948	NM_001012338.2	84	Cac/Aac																																													NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40369266	40369266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	108	545	0	ENST00000293328.3:c.1292G>T	p.Gly431Val	p.G431V	ENST00000293328	NM_012448.3	431	gGg/gTg																																													NEWRECORD																																		
CD79B	974	MSKCC	GRCh37	17	62007547	62007547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	73	409	0	ENST00000392795.3:c.320C>A	p.Thr107Asn	p.T107N	ENST00000392795	NM_001039933.1	107	aCc/aAc																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45374884	45374884	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	41	316	0	ENST00000262160.6:c.959A>T	p.Asn320Ile	p.N320I	ENST00000262160	NM_005901.5	320	aAc/aTc																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10610541	10610541	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	61	351	0	ENST00000171111.5:c.169G>T	p.Glu57Ter	p.E57*	ENST00000171111	NM_203500.1	57	Gag/Tag																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40710569	40710569	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	126	282	0	ENST00000373198.4:c.4282A>G	p.Ile1428Val	p.I1428V	ENST00000373198	NM_133170.3	1428	Atc/Gtc																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40710600	40710600	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	25	273	0	ENST00000373198.4:c.4251C>G	p.Ile1417Met	p.I1417M	ENST00000373198	NM_133170.3	1417	atC/atG																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36206809	36206809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	16	165	0	ENST00000300305.3:c.703G>A	p.Ala235Thr	p.A235T	ENST00000300305		235	Gcc/Acc																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76889090	76889090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	74	508	0	ENST00000373344.5:c.4920G>T	p.Lys1640Asn	p.K1640N	ENST00000373344	NM_000489.3	1640	aaG/aaT																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76931795	76931795	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	87	332	0	ENST00000373344.5:c.3737-2A>T		p.X1246_splice	ENST00000373344	NM_000489.3	1246																																														NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123200096	123200096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	91	409	0	ENST00000218089.9:c.2168G>T	p.Gly723Val	p.G723V	ENST00000218089	NM_001042749.1	723	gGa/gTa																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123220500	123220500	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	125	464	0	ENST00000218089.9:c.3157G>T	p.Asp1053Tyr	p.D1053Y	ENST00000218089	NM_001042749.1	1053	Gat/Tat																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11141497	11141498	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	57	349	0	ENST00000344626.4:c.3480dup	p.Leu1161AlafsTer15	p.L1161Afs*15	ENST00000344626	NM_003072.3	1158	-/G																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974689	21974689	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	48	315	0	ENST00000304494.5:c.138del	p.Arg47GlyfsTer6	p.R47Gfs*6	ENST00000304494	NM_000077.4	46	cgG/cg																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47045683	47045684	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	19	297	0	ENST00000329236.7:c.2330_2331delinsTT	p.Gly777Val	p.G777V	ENST00000329236	NM_001204466.1	777	gGG/gTT																																													NEWRECORD																																		
FUBP1	8880	MSKCC	GRCh37	1	78429978	78429978	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	159	367	1	ENST00000370768.2:c.901del	p.Ile301TyrfsTer22	p.I301Yfs*22	ENST00000370768	NM_003902.3	301	Ata/ta																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	128	351	4	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	137	336	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	231	552	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																													NEWRECORD																																		
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	203	641	1	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2216560	2216560	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777525091		P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	111	461	0	ENST00000398665.3:c.2204C>T	p.Thr735Met	p.T735M	ENST00000398665	NM_032482.2	735	aCg/aTg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	105	384	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16258817	16258817	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	183	618	0	ENST00000375759.3:c.6082A>G	p.Met2028Val	p.M2028V	ENST00000375759	NM_015001.2	2028	Atg/Gtg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175068	112175069	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	103	328	0	ENST00000257430.4:c.3778_3779del	p.Gln1260AspfsTer15	p.Q1260Dfs*15	ENST00000257430	NM_000038.5	1259	atACag/atag																																													NEWRECORD																																		
NCOA3	8202	MSKCC	GRCh37	20	46279861	46279866	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	111	387	0	ENST00000371998.3:c.3810_3815delACAGCA	p.Gln1275_Gln1276del	p.Q1275_Q1276del	ENST00000371998		1263	CAGCAA/-																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	174	529	3	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	260	676	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	95	382	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98270530	98270530	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	32	217	0	ENST00000331920.6:c.114delG	p.Leu39CysfsTer41	p.L39Cfs*41	ENST00000331920	NM_000264.3	38	ggG/gg																																													NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40375459	40375459	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1312	105	1184	0	ENST00000293328.3:c.491del	p.Lys164SerfsTer17	p.K164Sfs*17	ENST00000293328	NM_012448.3	164	aAg/ag																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11292579	11292579	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	169	488	2	ENST00000361445.4:c.2428G>T	p.Gly810Cys	p.G810C	ENST00000361445	NM_004958.3	810	Ggc/Tgc																																													NEWRECORD																																		
BCL10	8915	MSKCC	GRCh37	1	85741978	85741978	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1499	102	678	0	ENST00000370580.1:c.57+1G>A		p.X19_splice	ENST00000370580	NM_003921.4	19																																														NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120479966	120479966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	216	496	0	ENST00000256646.2:c.3461C>T	p.Ala1154Val	p.A1154V	ENST00000256646	NM_024408.3	1154	gCg/gTg																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156843724	156843724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	306	602	1	ENST00000524377.1:c.1150G>A	p.Glu384Lys	p.E384K	ENST00000524377	NM_002529.3	384	Gag/Aag																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47703538	47703538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63749932		P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	204	623	1	ENST00000233146.2:c.2038C>T	p.Arg680Ter	p.R680*	ENST00000233146	NM_000251.2	680	Cga/Tga																																													NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242794355	242794355	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	75	475	0	ENST00000334409.5:c.587C>G	p.Ala196Gly	p.A196G	ENST00000334409	NM_005018.2	196	gCa/gGa																																													NEWRECORD																																		
RHOA	387	MSKCC	GRCh37	3	49412922	49412922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	68	825	0	ENST00000418115.1:c.101A>G	p.Tyr34Cys	p.Y34C	ENST00000418115	NM_001664.2	34	tAt/tGt																																													NEWRECORD																																		
BAP1	8314	MSKCC	GRCh37	3	52439181	52439181	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	35	269	0	ENST00000460680.1:c.1061T>G	p.Val354Gly	p.V354G	ENST00000460680	NM_004656.3	354	gTc/gGc																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71090533	71090533	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	269	595	0	ENST00000318789.4:c.815A>G	p.Asn272Ser	p.N272S	ENST00000318789	NM_032682.5	272	aAc/aGc																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71090597	71090597	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	335	648	0	ENST00000318789.4:c.751A>G	p.Ser251Gly	p.S251G	ENST00000318789	NM_032682.5	251	Agt/Ggt																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55979624	55979624	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	187	545	1	ENST00000263923.4:c.823C>T	p.Arg275Ter	p.R275*	ENST00000263923	NM_002253.2	275	Cga/Tga																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187510101	187510101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	116	433	0	ENST00000441802.2:c.13412C>T	p.Ala4471Val	p.A4471V	ENST00000441802	NM_005245.3	4471	gCg/gTg																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1282650	1282650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	198	665	0	ENST00000310581.5:c.1663G>A	p.Glu555Lys	p.E555K	ENST00000310581	NM_198253.2	555	Gag/Aag																																													NEWRECORD																																		
CSF1R	1436	MSKCC	GRCh37	5	149433887	149433887	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs202216061		P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	77	350	0	ENST00000286301.3:c.2761C>T	p.Arg921Trp	p.R921W	ENST00000286301	NM_005211.3	921	Cgg/Tgg																																													NEWRECORD																																		
HIST1H2BD	3017	MSKCC	GRCh37	6	26158654	26158654	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs140038730		P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	13	47	0	ENST00000289316.2:c.257A>G	p.Lys86Arg	p.K86R	ENST00000289316	NM_138720.2	86	aAg/aGg																																													NEWRECORD																																		
HLA-A	3105	MSKCC	GRCh37	6	29910692	29910692	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	229	506	2	ENST00000376809.5:c.232C>T	p.Gln78Ter	p.Q78*	ENST00000376809	NM_002116.7	78	Cag/Tag																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	93967829	93967829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1132	151	734	1	ENST00000369303.4:c.2098G>A	p.Val700Ile	p.V700I	ENST00000369303	NM_004440.3	700	Gtt/Att																																													NEWRECORD																																		
FGFR1	2260	MSKCC	GRCh37	8	38271516	38271516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	147	721	0	ENST00000425967.3:c.2305C>T	p.His769Tyr	p.H769Y	ENST00000425967	NM_001174067.1	769	Cat/Tat																																													NEWRECORD																																		
GNAQ	2776	MSKCC	GRCh37	9	80412526	80412526	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	304	502	1	ENST00000286548.4:c.515A>G	p.Tyr172Cys	p.Y172C	ENST00000286548	NM_002072.3	172	tAc/tGc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8100468	8100468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	52	459	0	ENST00000346208.3:c.442C>A	p.Pro148Thr	p.P148T	ENST00000346208		148	Ccg/Acg																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63661981	63661981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1191	66	326	1	ENST00000279873.7:c.85C>T	p.Leu29Phe	p.L29F	ENST00000279873	NM_032199.2	29	Ctt/Ttt																																													NEWRECORD																																		
RPS6KB2	6199	MSKCC	GRCh37	11	67196059	67196059	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	58	575	0	ENST00000312629.5:c.43A>G	p.Ser15Gly	p.S15G	ENST00000312629	NM_003952.2	15	Agc/Ggc																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118375929	118375929	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	65	445	0	ENST00000534358.1:c.9322A>G	p.Thr3108Ala	p.T3108A	ENST00000534358	NM_005933.3	3108	Acc/Gcc																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46287273	46287273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	216	551	0	ENST00000334344.6:c.5218G>A	p.Ala1740Thr	p.A1740T	ENST00000334344	NM_152641.2	1740	Gca/Aca																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115109731	115109731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	213	519	0	ENST00000257566.3:c.2147C>T	p.Ala716Val	p.A716V	ENST00000257566	NM_016569.3	716	gCg/gTg																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133201534	133201534	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	147	566	0	ENST00000320574.5:c.6704A>G	p.Tyr2235Cys	p.Y2235C	ENST00000320574	NM_006231.2	2235	tAc/tGc																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	49033830	49033830	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202031219		P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	214	431	0	ENST00000267163.4:c.1967G>A	p.Arg656Gln	p.R656Q	ENST00000267163	NM_000321.2	656	cGg/cAg																																													NEWRECORD																																		
RAD51B	5890	MSKCC	GRCh37	14	68352648	68352648	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	206	413	0	ENST00000487270.1:c.515T>C	p.Leu172Ser	p.L172S	ENST00000487270	NM_133509.3	172	tTg/tCg																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99467848	99467848	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	192	638	0	ENST00000268035.6:c.2717A>G	p.Gln906Arg	p.Q906R	ENST00000268035	NM_000875.3	906	cAg/cGg																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2115574	2115574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	147	527	1	ENST00000219476.3:c.1654G>A	p.Ala552Thr	p.A552T	ENST00000219476	NM_000548.3	552	Gca/Aca																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3778173	3778173	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	41	317	0	ENST00000262367.5:c.6875A>G	p.Gln2292Arg	p.Q2292R	ENST00000262367	NM_004380.2	2292	cAg/cGg																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72992513	72992513	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	293	896	1	ENST00000268489.5:c.1532C>A	p.Pro511His	p.P511H	ENST00000268489	NM_006885.3	511	cCt/cAt																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89346357	89346357	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	105	614	0	ENST00000301030.4:c.6593G>T	p.Arg2198Leu	p.R2198L	ENST00000301030	NM_001256183.1	2198	cGg/cTg																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89348151	89348151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	207	923	1	ENST00000301030.4:c.4799G>A	p.Arg1600Gln	p.R1600Q	ENST00000301030	NM_001256183.1	1600	cGg/cAg																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89350245	89350245	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	282	919	0	ENST00000301030.4:c.2705A>G	p.Glu902Gly	p.E902G	ENST00000301030	NM_001256183.1	902	gAg/gGg																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89857940	89857940	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	146	414	0	ENST00000389301.3:c.1230G>T	p.Trp410Cys	p.W410C	ENST00000389301	NM_000135.2	410	tgG/tgT																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435491	56435491	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	211	516	0	ENST00000407977.2:c.1646A>G	p.His549Arg	p.H549R	ENST00000407977		549	cAc/cGc																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78867630	78867630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	174	578	2	ENST00000306801.3:c.2366G>A	p.Arg789His	p.R789H	ENST00000306801	NM_020761.2	789	cGc/cAc																																													NEWRECORD																																		
PIK3C3	5289	MSKCC	GRCh37	18	39623700	39623700	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	215	504	0	ENST00000262039.4:c.2107T>C	p.Phe703Leu	p.F703L	ENST00000262039	NM_002647.2	703	Ttt/Ctt																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5222228	5222228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	131	469	0	ENST00000357368.4:c.3107C>T	p.Ser1036Leu	p.S1036L	ENST00000357368	NM_002850.3	1036	tCg/tTg																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5245841	5245841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	72	604	1	ENST00000357368.4:c.934G>A	p.Val312Met	p.V312M	ENST00000357368	NM_002850.3	312	Gtg/Atg																																													NEWRECORD																																		
PIK3R2	5296	MSKCC	GRCh37	19	18278077	18278077	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	75	592	0	ENST00000222254.8:c.1697A>G	p.Asp566Gly	p.D566G	ENST00000222254	NM_005027.3	566	gAc/gGc																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022961	31022961	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	162	538	0	ENST00000375687.4:c.2446T>C	p.Ser816Pro	p.S816P	ENST00000375687	NM_015338.5	816	Tct/Cct																																													NEWRECORD																																		
SMARCB1	6598	MSKCC	GRCh37	22	24159023	24159023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	201	460	0	ENST00000263121.7:c.695C>T	p.Thr232Met	p.T232M	ENST00000263121	NM_003073.3	232	aCg/aTg																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41573200	41573200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	31	406	0	ENST00000263253.7:c.5485C>T	p.Arg1829Cys	p.R1829C	ENST00000263253	NM_001429.3	1829	Cgc/Tgc																																													NEWRECORD																																		
GATA1	2623	MSKCC	GRCh37	X	48652558	48652558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	49	91	0	ENST00000376670.3:c.1229C>T	p.Pro410Leu	p.P410L	ENST00000376670	NM_002049.3	410	cCg/cTg																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70342150	70342150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	374	364	0	ENST00000374080.3:c.1202C>T	p.Pro401Leu	p.P401L	ENST00000374080		401	cCg/cTg																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32166916	32166916	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	51	183	2	ENST00000375023.3:c.4322del	p.Pro1441LeufsTer17	p.P1441Lfs*17	ENST00000375023	NM_004557.3	1441	cCt/ct																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56178577	56178579	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	192	504	2	ENST00000399503.3:c.3560_3562del	p.Glu1187del	p.E1187del	ENST00000399503	NM_005921.1	1184	GAA/-																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2211795	2211795	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	68	732	1	ENST00000398665.3:c.1516del	p.Gln506SerfsTer51	p.Q506Sfs*51	ENST00000398665	NM_032482.2	504	aCc/ac																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41244596	41244596	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	72	560	0	ENST00000357654.3:c.2952delT	p.Ile986SerfsTer14	p.I986Sfs*14	ENST00000357654	NM_007294.3	984	ttT/tt																																													NEWRECORD																																		
PIK3C3	5289	MSKCC	GRCh37	18	39629562	39629562	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	218	543	2	ENST00000262039.4:c.2260del	p.Thr754GlnfsTer7	p.T754Qfs*7	ENST00000262039	NM_002647.2	752	acA/ac																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32914617	32914617	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1274	383	1039	0	ENST00000380152.3:c.6129delA	p.Gly2044AlafsTer7	p.G2044Afs*7	ENST00000380152		2042	cAa/ca																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99467855	99467856	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	262	622	0	ENST00000268035.6:c.2732_2733dupCT	p.Gly912LeufsTer26	p.G912Lfs*26	ENST00000268035	NM_000875.3	908	-/TC																																													NEWRECORD																																		
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	213	391	2	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133219487	133219487	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	172	574	0	ENST00000320574.5:c.4647del	p.Lys1550AsnfsTer12	p.K1550Nfs*12	ENST00000320574	NM_006231.2	1549	ccC/cc																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41743896	41743896	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	183	601	1	ENST00000301178.4:c.836delC	p.Pro279GlnfsTer18	p.P279Qfs*18	ENST00000301178	NM_021913.4	277	gaC/ga																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152265522	152265522	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	125	360	0	ENST00000206249.3:c.975del	p.Ile326TyrfsTer17	p.I326Yfs*17	ENST00000206249	NM_000125.3	325	ccG/cc																																													NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1808898	1808898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	166	671	4	ENST00000260795.2:c.2334delC	p.Ser779AlafsTer41	p.S779Afs*41	ENST00000260795		777	aCc/ac																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32163553	32163554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs777647776		P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	108	339	6	ENST00000375023.3:c.5672dup	p.Gly1892ArgfsTer24	p.G1892Rfs*24	ENST00000375023	NM_004557.3	1891	ggc/ggGc																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176719159	176719159	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	134	301	0	ENST00000439151.2:c.6463+1del		p.G2155fs	ENST00000439151	NM_022455.4	2155	Ggg/gg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49439880	49439881	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	217	676	0	ENST00000301067.7:c.4660_4661del	p.Val1554LeufsTer48	p.V1554Lfs*48	ENST00000301067	NM_003482.3	1554	GTc/c																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118380780	118380780	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	264	585	0	ENST00000534358.1:c.11022del	p.Phe3674LeufsTer23	p.F3674Lfs*23	ENST00000534358	NM_005933.3	3673	gTt/gt																																													NEWRECORD																																		
HLA-A	3105	MSKCC	GRCh37	6	29910346	29910346	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	250	556	0	ENST00000376809.5:c.19delC	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000376809	NM_002116.7	6	Ccc/cc																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56487896	56487897	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	193	511	0	ENST00000267101.3:c.1628_1629del	p.Phe543CysfsTer3	p.F543Cfs*3	ENST00000267101	NM_001982.3	543	TTt/t																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142266651	142266651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	238	490	1	ENST00000350721.4:c.3273del	p.Phe1091LeufsTer28	p.F1091Lfs*28	ENST00000350721	NM_001184.3	1091	ttT/tt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112154850	112154850	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	244	464	0	ENST00000257430.4:c.1124del	p.Gly375AlafsTer79	p.G375Afs*79	ENST00000257430	NM_000038.5	374	cGg/cg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1196	131	428	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0006587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	89	693	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0006587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	117	532	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0006587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1262	95	820	3	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0006587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	63	462	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0006587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1097	35	733	1	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																													NEWRECORD																																		
MYC	4609	MSKCC	GRCh37	8	128750945	128750945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	89	489	1	ENST00000377970.2:c.482C>T	p.Ser161Leu	p.S161L	ENST00000377970	NM_002467.4	161	tCa/tTa																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411276	63411276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	57	389	1	ENST00000330258.3:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000330258	NM_152424.3	631	Cga/Tga																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63554214	63554246	+	inframe_deletion	In_Frame_Del	DEL	CTGCGCCTGGTCAAACATGATGGAATCAATCTG	CTGCGCCTGGTCAAACATGATGGAATCAATCTG	-			P-0006587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	231	619	0	ENST00000307078.5:c.493_525del	p.Gln165_Gln175del	p.Q165_Q175del	ENST00000307078	NM_004655.3	165	CAGATTGATTCCATCATGTTTGACCAGGCGCAG/-																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119752	70119753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	225	707	0	ENST00000245479.2:c.755dup	p.Lys253GlufsTer43	p.K253Efs*43	ENST00000245479	NM_000346.3	252	ctg/cTtg																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47041428	47041429	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	101	379	0	ENST00000329236.7:c.1542dup	p.Asn515GlnfsTer35	p.N515Qfs*35	ENST00000329236	NM_001204466.1	513	gac/gaCc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0005164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	136	451	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55956221	55956221	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	145	491	0	ENST00000263923.4:c.3094C>T	p.Arg1032Ter	p.R1032*	ENST00000263923	NM_002253.2	1032	Cga/Tga																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	170	445	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	150001463	150001463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	131	427	0	ENST00000253339.5:c.2141G>A	p.Gly714Glu	p.G714E	ENST00000253339		714	gGa/gAa																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133209060	133209061	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	84	460	0	ENST00000320574.5:c.6170dup	p.Asn2057LysfsTer2	p.N2057Kfs*2	ENST00000320574	NM_006231.2	2057	aat/aaAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175756	112175756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	117	370	0	ENST00000257430.4:c.4466del	p.Leu1489TyrfsTer18	p.L1489Yfs*18	ENST00000257430	NM_000038.5	1489	Tta/ta																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0004120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	69	264	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0007361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	39	305	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	55	306	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41268766	41268766	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	81	449	0	ENST00000349496.5:c.1004A>T	p.Lys335Ile	p.K335I	ENST00000349496	NM_001904.3	335	aAa/aTa																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0007361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	8	367	0	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65309760	65309760	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	20	344	0	ENST00000342505.4:c.2390A>G	p.Lys797Arg	p.K797R	ENST00000342505	NM_002227.2	797	aAg/aGg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	30	349	0	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40944375	40944375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	18	329	0	ENST00000373198.4:c.2127C>A	p.Ser709Arg	p.S709R	ENST00000373198	NM_133170.3	709	agC/agA																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173785	112173785	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	21	290	0	ENST00000257430.4:c.2496del	p.Ser833AlafsTer9	p.S833Afs*9	ENST00000257430	NM_000038.5	832	Ccc/cc																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	88	154	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112157690	112157690	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0007025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	174	266	1	ENST00000257430.4:c.1408+2T>A		p.X470_splice	ENST00000257430	NM_000038.5	470																																														NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11307902	11307902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	239	652	0	ENST00000361445.4:c.1090G>T	p.Asp364Tyr	p.D364Y	ENST00000361445	NM_004958.3	364	Gac/Tac																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16237703	16237703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	261	592	1	ENST00000375759.3:c.1150C>T	p.Arg384Trp	p.R384W	ENST00000375759	NM_015001.2	384	Cgg/Tgg																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16259962	16259962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	294	571	0	ENST00000375759.3:c.7227G>T	p.Glu2409Asp	p.E2409D	ENST00000375759	NM_015001.2	2409	gaG/gaT																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27094291	27094291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	168	404	0	ENST00000324856.7:c.2999C>A	p.Ser1000Tyr	p.S1000Y	ENST00000324856	NM_006015.4	1000	tCt/tAt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105694	27105694	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	179	586	2	ENST00000324856.7:c.5305C>A	p.Leu1769Ile	p.L1769I	ENST00000324856	NM_006015.4	1769	Cta/Ata																																													NEWRECORD																																		
STK40	83931	MSKCC	GRCh37	1	36826842	36826842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	236	621	1	ENST00000373129.3:c.92G>T	p.Arg31Ile	p.R31I	ENST00000373129	NM_032017.1	31	aGa/aTa																																													NEWRECORD																																		
CSF3R	1441	MSKCC	GRCh37	1	36941155	36941155	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs145623142		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	267	752	1	ENST00000361632.4:c.184C>A	p.Leu62Met	p.L62M	ENST00000361632		62	Ctg/Atg																																													NEWRECORD																																		
MPL	4352	MSKCC	GRCh37	1	43805719	43805719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	78	571	0	ENST00000372470.3:c.775G>A	p.Glu259Lys	p.E259K	ENST00000372470	NM_005373.2	259	Gaa/Aaa																																													NEWRECORD																																		
MPL	4352	MSKCC	GRCh37	1	43812274	43812274	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	206	436	0	ENST00000372470.3:c.1139G>C	p.Gly380Ala	p.G380A	ENST00000372470	NM_005373.2	380	gGc/gCc																																													NEWRECORD																																		
MUTYH	4595	MSKCC	GRCh37	1	45795032	45795032	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	237	599	1	ENST00000372115.3:c.1554C>A	p.Phe518Leu	p.F518L	ENST00000372115	NM_001048171.1	518	ttC/ttA																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65300268	65300268	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	120	348	0	ENST00000342505.4:c.3442G>T	p.Gly1148Ter	p.G1148*	ENST00000342505	NM_002227.2	1148	Gga/Tga																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65310506	65310506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	277	568	2	ENST00000342505.4:c.2182G>A	p.Asp728Asn	p.D728N	ENST00000342505	NM_002227.2	728	Gac/Aac																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65316594	65316594	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	97	380	0	ENST00000342505.4:c.1649-1G>T		p.X550_splice	ENST00000342505	NM_002227.2	550																																														NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65321245	65321245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	173	435	0	ENST00000342505.4:c.1595G>A	p.Arg532His	p.R532H	ENST00000342505	NM_002227.2	532	cGc/cAc																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65334993	65334993	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	67	399	0	ENST00000342505.4:c.647+1G>T		p.X216_splice	ENST00000342505	NM_002227.2	216																																														NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65348959	65348959	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	46	288	0	ENST00000342505.4:c.205+1G>A		p.X69_splice	ENST00000342505	NM_002227.2	69																																														NEWRECORD																																		
NEGR1	257194	MSKCC	GRCh37	1	72163744	72163744	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1248852117		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	215	697	0	ENST00000357731.5:c.614C>T	p.Ala205Val	p.A205V	ENST00000357731	NM_173808.2	205	gCg/gTg																																													NEWRECORD																																		
FAM46C	54855	MSKCC	GRCh37	1	118166011	118166011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	175	463	0	ENST00000369448.3:c.521G>A	p.Arg174Gln	p.R174Q	ENST00000369448	NM_017709.3	174	cGg/cAg																																													NEWRECORD																																		
RIT1	6016	MSKCC	GRCh37	1	155870200	155870200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	214	567	0	ENST00000368323.3:c.639G>T	p.Lys213Asn	p.K213N	ENST00000368323	NM_006912.5	213	aaG/aaT																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156834571	156834571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	147	551	0	ENST00000524377.1:c.339C>A	p.Phe113Leu	p.F113L	ENST00000524377	NM_002529.3	113	ttC/ttA																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156849050	156849050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	230	492	1	ENST00000524377.1:c.1942C>A	p.His648Asn	p.H648N	ENST00000524377	NM_002529.3	648	Cac/Aac																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162688884	162688884	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	162	504	0	ENST00000367921.3:c.31C>A	p.Leu11Met	p.L11M	ENST00000367921	NM_006182.2	11	Ctg/Atg																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162741963	162741963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	221	632	0	ENST00000367921.3:c.1654G>A	p.Asp552Asn	p.D552N	ENST00000367921	NM_006182.2	552	Gat/Aat																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162748475	162748475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	152	467	0	ENST00000367921.3:c.2389G>T	p.Val797Phe	p.V797F	ENST00000367921	NM_006182.2	797	Gtt/Ttt																																													NEWRECORD																																		
CDC73	79577	MSKCC	GRCh37	1	193099343	193099343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	166	389	0	ENST00000367435.3:c.277G>T	p.Asp93Tyr	p.D93Y	ENST00000367435	NM_024529.4	93	Gat/Tat																																													NEWRECORD																																		
CDC73	79577	MSKCC	GRCh37	1	193119509	193119509	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	68	440	1	ENST00000367435.3:c.904G>T	p.Glu302Ter	p.E302*	ENST00000367435	NM_024529.4	302	Gaa/Taa																																													NEWRECORD																																		
HIST3H3	8290	MSKCC	GRCh37	1	228613019	228613019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1077	106	592	1	ENST00000366696.1:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000366696	NM_003493.2	3	cGa/cAa																																													NEWRECORD																																		
AKT3	10000	MSKCC	GRCh37	1	243675668	243675668	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	152	419	0	ENST00000263826.5:c.1312G>T	p.Glu438Ter	p.E438*	ENST00000263826	NM_005465.4	438	Gaa/Taa																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25965982	25965982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62130126		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	231	560	0	ENST00000435504.4:c.3224G>A	p.Arg1075Gln	p.R1075Q	ENST00000435504		1075	cGg/cAg																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25994324	25994324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	233	590	0	ENST00000435504.4:c.489G>T	p.Lys163Asn	p.K163N	ENST00000435504		163	aaG/aaT																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	26068357	26068357	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	128	421	0	ENST00000435504.4:c.133G>T	p.Glu45Ter	p.E45*	ENST00000435504		45	Gaa/Taa																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	26068393	26068393	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	190	467	0	ENST00000435504.4:c.97G>T	p.Glu33Ter	p.E33*	ENST00000435504		33	Gaa/Taa																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29446209	29446209	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	220	414	0	ENST00000389048.3:c.3358C>T	p.Arg1120Trp	p.R1120W	ENST00000389048	NM_004304.4	1120	Cgg/Tgg																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29917726	29917726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	164	478	1	ENST00000389048.3:c.942G>T	p.Glu314Asp	p.E314D	ENST00000389048	NM_004304.4	314	gaG/gaT																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47698180	47698180	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	161	438	0	ENST00000233146.2:c.1738G>T	p.Glu580Ter	p.E580*	ENST00000233146	NM_000251.2	580	Gaa/Taa																																													NEWRECORD																																		
REL	5966	MSKCC	GRCh37	2	61128137	61128137	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	174	309	0	ENST00000295025.8:c.313T>G	p.Leu105Val	p.L105V	ENST00000295025	NM_002908.2	105	Ttg/Gtg																																													NEWRECORD																																		
REL	5966	MSKCC	GRCh37	2	61144142	61144142	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	58	387	0	ENST00000295025.8:c.525T>G	p.Ile175Met	p.I175M	ENST00000295025	NM_002908.2	175	atT/atG																																													NEWRECORD																																		
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520009		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	152	356	2	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																													NEWRECORD																																		
XPO1	7514	MSKCC	GRCh37	2	61753622	61753622	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	131	419	0	ENST00000401558.2:c.161A>C	p.Lys54Thr	p.K54T	ENST00000401558	NM_003400.3	54	aAg/aCg																																													NEWRECORD																																		
ERCC3	2071	MSKCC	GRCh37	2	128046948	128046948	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	199	543	0	ENST00000285398.2:c.787G>T	p.Glu263Ter	p.E263*	ENST00000285398	NM_000122.1	263	Gaa/Taa																																													NEWRECORD																																		
CXCR4	7852	MSKCC	GRCh37	2	136873097	136873097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1119	347	761	6	ENST00000241393.3:c.401G>A	p.Arg134His	p.R134H	ENST00000241393	NM_003467.2	134	cGc/cAc																																													NEWRECORD																																		
ACVR1	90	MSKCC	GRCh37	2	158617565	158617565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	112	632	1	ENST00000263640.3:c.1091G>A	p.Ser364Asn	p.S364N	ENST00000263640	NM_001105.4	364	aGc/aAc																																													NEWRECORD																																		
ACVR1	90	MSKCC	GRCh37	2	158626972	158626972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	262	624	2	ENST00000263640.3:c.698C>T	p.Ala233Val	p.A233V	ENST00000263640	NM_001105.4	233	gCc/gTc																																													NEWRECORD																																		
NFE2L2	4780	MSKCC	GRCh37	2	178096592	178096592	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	125	365	2	ENST00000397062.3:c.739C>A	p.Leu247Ile	p.L247I	ENST00000397062	NM_006164.4	247	Ctt/Att																																													NEWRECORD																																		
PMS1	5378	MSKCC	GRCh37	2	190682826	190682826	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	147	417	0	ENST00000441310.2:c.502G>T	p.Glu168Ter	p.E168*	ENST00000441310	NM_000534.4	168	Gaa/Taa																																													NEWRECORD																																		
PMS1	5378	MSKCC	GRCh37	2	190728575	190728575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	232	538	0	ENST00000441310.2:c.1963A>G	p.Lys655Glu	p.K655E	ENST00000441310	NM_000534.4	655	Aaa/Gaa																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198260916	198260916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	165	608	0	ENST00000335508.6:c.3403G>A	p.Glu1135Lys	p.E1135K	ENST00000335508	NM_012433.2	1135	Gaa/Aaa																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198263220	198263220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	179	486	0	ENST00000335508.6:c.3099G>T	p.Glu1033Asp	p.E1033D	ENST00000335508	NM_012433.2	1033	gaG/gaT																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198270010	198270010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	57	445	0	ENST00000335508.6:c.1426G>T	p.Asp476Tyr	p.D476Y	ENST00000335508	NM_012433.2	476	Gat/Tat																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202123091	202123091	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	184	290	0	ENST00000358485.4:c.137G>T	p.Gly46Val	p.G46V	ENST00000358485	NM_001080125.1	46	gGa/gTa																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202131447	202131447	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	184	516	0	ENST00000358485.4:c.415A>C	p.Asn139His	p.N139H	ENST00000358485	NM_001080125.1	139	Aac/Cac																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202149643	202149643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	209	576	0	ENST00000358485.4:c.1084G>A	p.Asp362Asn	p.D362N	ENST00000358485	NM_001080125.1	362	Gac/Aac																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212251606	212251606	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	59	377	0	ENST00000342788.4:c.3453G>T	p.Met1151Ile	p.M1151I	ENST00000342788	NM_005235.2	1151	atG/atT																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212251747	212251747	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	89	427	0	ENST00000342788.4:c.3312C>A	p.Asp1104Glu	p.D1104E	ENST00000342788	NM_005235.2	1104	gaC/gaA																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212251814	212251814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	47	387	0	ENST00000342788.4:c.3245G>T	p.Arg1082Ile	p.R1082I	ENST00000342788	NM_005235.2	1082	aGa/aTa																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212286805	212286805	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	143	405	0	ENST00000342788.4:c.2891G>T	p.Arg964Ile	p.R964I	ENST00000342788	NM_005235.2	964	aGa/aTa																																													NEWRECORD																																		
INHA	3623	MSKCC	GRCh37	2	220439839	220439839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	245	660	0	ENST00000243786.2:c.692G>A	p.Arg231Gln	p.R231Q	ENST00000243786	NM_002191.3	231	cGa/cAa																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227661897	227661897	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs544750977		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	141	331	0	ENST00000305123.5:c.1558C>T	p.Arg520Trp	p.R520W	ENST00000305123	NM_005544.2	520	Cgg/Tgg																																													NEWRECORD																																		
RAF1	5894	MSKCC	GRCh37	3	12641652	12641652	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	40	341	0	ENST00000251849.4:c.989T>G	p.Ile330Ser	p.I330S	ENST00000251849	NM_002880.3	330	aTt/aGt																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47144859	47144859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	103	505	1	ENST00000409792.3:c.4894G>A	p.Glu1632Lys	p.E1632K	ENST00000409792	NM_014159.6	1632	Gaa/Aaa																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47162485	47162485	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	198	497	0	ENST00000409792.3:c.3641A>C	p.Asn1214Thr	p.N1214T	ENST00000409792	NM_014159.6	1214	aAt/aCt																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47163277	47163277	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149265978		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	182	620	1	ENST00000409792.3:c.2849G>A	p.Arg950His	p.R950H	ENST00000409792	NM_014159.6	950	cGt/cAt																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47165678	47165678	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	201	540	0	ENST00000409792.3:c.448C>A	p.His150Asn	p.H150N	ENST00000409792	NM_014159.6	150	Cat/Aat																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52643768	52643768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	160	540	0	ENST00000394830.3:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000394830	NM_018313.4	710	Cga/Tga																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52696234	52696234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1120	66	563	0	ENST00000394830.3:c.443G>T	p.Arg148Ile	p.R148I	ENST00000394830	NM_018313.4	148	aGa/aTa																																													NEWRECORD																																		
MITF	4286	MSKCC	GRCh37	3	70008501	70008501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147148433		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	174	502	2	ENST00000352241.4:c.1091G>A	p.Arg364His	p.R364H	ENST00000352241	NM_198159.2	364	cGc/cAc																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71015074	71015074	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	73	547	0	ENST00000318789.4:c.1856A>G	p.Asp619Gly	p.D619G	ENST00000318789	NM_032682.5	619	gAc/gGc																																													NEWRECORD																																		
SHQ1	55164	MSKCC	GRCh37	3	72873669	72873669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	174	404	1	ENST00000325599.8:c.633G>T	p.Gln211His	p.Q211H	ENST00000325599	NM_018130.2	211	caG/caT																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89259649	89259649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	35	209	0	ENST00000336596.2:c.793G>T	p.Glu265Ter	p.E265*	ENST00000336596	NM_005233.5	265	Gaa/Taa																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89456518	89456518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	127	500	0	ENST00000336596.2:c.1694G>T	p.Gly565Val	p.G565V	ENST00000336596	NM_005233.5	565	gGg/gTg																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89498484	89498484	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	191	617	0	ENST00000336596.2:c.2456C>A	p.Ser819Tyr	p.S819Y	ENST00000336596	NM_005233.5	819	tCt/tAt																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134670708	134670708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	156	480	0	ENST00000398015.3:c.619C>A	p.Pro207Thr	p.P207T	ENST00000398015	NM_004441.4	207	Cca/Aca																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138376574	138376574	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	198	572	1	ENST00000289153.2:c.2900T>A	p.Val967Asp	p.V967D	ENST00000289153	NM_006219.2	967	gTc/gAc																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138426112	138426112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	172	432	0	ENST00000289153.2:c.1419G>T	p.Leu473Phe	p.L473F	ENST00000289153	NM_006219.2	473	ttG/ttT																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138453486	138453486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	210	557	0	ENST00000289153.2:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000289153	NM_006219.2	321	cGa/cAa																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142204013	142204013	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	159	506	2	ENST00000350721.4:c.6190C>A	p.Leu2064Ile	p.L2064I	ENST00000350721	NM_001184.3	2064	Ctc/Atc																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142253951	142253951	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	203	492	0	ENST00000350721.4:c.3916A>C	p.Ser1306Arg	p.S1306R	ENST00000350721	NM_001184.3	1306	Agc/Cgc																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142278247	142278247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	159	307	0	ENST00000350721.4:c.1578G>T	p.Lys526Asn	p.K526N	ENST00000350721	NM_001184.3	526	aaG/aaT																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178917594	178917594	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	179	447	0	ENST00000263967.3:c.469A>G	p.Asn157Asp	p.N157D	ENST00000263967	NM_006218.2	157	Aat/Gat																																													NEWRECORD																																		
EIF4A2	1974	MSKCC	GRCh37	3	186504354	186504354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	110	332	0	ENST00000323963.5:c.691G>T	p.Asp231Tyr	p.D231Y	ENST00000323963		231	Gat/Tat																																													NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189584501	189584501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	68	474	0	ENST00000264731.3:c.797G>A	p.Arg266Gln	p.R266Q	ENST00000264731	NM_003722.4	266	cGa/cAa																																													NEWRECORD																																		
PHOX2B	8929	MSKCC	GRCh37	4	41749374	41749374	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	31	313	0	ENST00000226382.2:c.421C>T	p.Arg141Ter	p.R141*	ENST00000226382	NM_003924.3	141	Cga/Tga																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55133724	55133724	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	158	523	0	ENST00000257290.5:c.937G>T	p.Gly313Cys	p.G313C	ENST00000257290	NM_006206.4	313	Ggt/Tgt																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55133884	55133884	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	146	459	0	ENST00000257290.5:c.1097A>C	p.Asp366Ala	p.D366A	ENST00000257290	NM_006206.4	366	gAt/gCt																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55138675	55138675	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	132	434	0	ENST00000257290.5:c.1352A>C	p.Lys451Thr	p.K451T	ENST00000257290	NM_006206.4	451	aAa/aCa																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55146497	55146497	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	139	445	0	ENST00000257290.5:c.2171C>A	p.Ser724Tyr	p.S724Y	ENST00000257290	NM_006206.4	724	tCt/tAt																																													NEWRECORD																																		
KIT	3815	MSKCC	GRCh37	4	55565863	55565863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	66	581	1	ENST00000288135.5:c.687C>A	p.Phe229Leu	p.F229L	ENST00000288135	NM_000222.2	229	ttC/ttA																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55948151	55948151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	195	518	0	ENST00000263923.4:c.3820G>T	p.Asp1274Tyr	p.D1274Y	ENST00000263923	NM_002253.2	1274	Gac/Tac																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55956201	55956201	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	206	519	0	ENST00000263923.4:c.3114G>T	p.Glu1038Asp	p.E1038D	ENST00000263923	NM_002253.2	1038	gaG/gaT																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55968651	55968651	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149740758		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	157	480	0	ENST00000263923.4:c.2012G>A	p.Gly671Glu	p.G671E	ENST00000263923	NM_002253.2	671	gGa/gAa																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55976831	55976831	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	162	411	0	ENST00000263923.4:c.1081G>T	p.Glu361Ter	p.E361*	ENST00000263923	NM_002253.2	361	Gaa/Taa																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55980418	55980418	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs75079316		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	148	457	0	ENST00000263923.4:c.673G>T	p.Asp225Tyr	p.D225Y	ENST00000263923	NM_002253.2	225	Gat/Tat																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66189906	66189906	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149835568		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	146	491	0	ENST00000273854.3:c.3040G>A	p.Gly1014Ser	p.G1014S	ENST00000273854	NM_004439.5	1014	Ggt/Agt																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66280142	66280142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	36	349	0	ENST00000273854.3:c.1547C>T	p.Thr516Met	p.T516M	ENST00000273854	NM_004439.5	516	aCg/aTg																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66509087	66509087	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	128	374	0	ENST00000273854.3:c.240A>C	p.Lys80Asn	p.K80N	ENST00000273854	NM_004439.5	80	aaA/aaC																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66509097	66509097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	112	386	0	ENST00000273854.3:c.230C>T	p.Ala77Val	p.A77V	ENST00000273854	NM_004439.5	77	gCt/gTt																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106157352	106157352	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	171	496	0	ENST00000380013.4:c.2253G>T	p.Lys751Asn	p.K751N	ENST00000380013	NM_001127208.2	751	aaG/aaT																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106158014	106158014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	172	485	0	ENST00000380013.4:c.2915C>A	p.Ser972Tyr	p.S972Y	ENST00000380013	NM_001127208.2	972	tCt/tAt																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106164011	106164011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	199	581	0	ENST00000380013.4:c.3521C>T	p.Ala1174Val	p.A1174V	ENST00000380013	NM_001127208.2	1174	gCt/gTt																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143324204	143324204	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	155	361	0	ENST00000262992.4:c.259A>C	p.Thr87Pro	p.T87P	ENST00000262992	NM_001101669.1	87	Aca/Cca																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249457	153249457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	166	496	1	ENST00000281708.4:c.1321C>T	p.Arg441Trp	p.R441W	ENST00000281708	NM_033632.3	441	Cgg/Tgg																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187510153	187510153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1040	246	675	0	ENST00000441802.2:c.13360G>A	p.Glu4454Lys	p.E4454K	ENST00000441802	NM_005245.3	4454	Gaa/Aaa																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187527368	187527368	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	91	183	0	ENST00000441802.2:c.10207-1G>T		p.X3403_splice	ENST00000441802	NM_005245.3	3403																																														NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187531020	187531020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	225	535	0	ENST00000441802.2:c.10003T>C	p.Phe3335Leu	p.F3335L	ENST00000441802	NM_005245.3	3335	Ttc/Ctc																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187532825	187532825	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	225	490	1	ENST00000441802.2:c.9568G>T	p.Glu3190Ter	p.E3190*	ENST00000441802	NM_005245.3	3190	Gaa/Taa																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187539809	187539809	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	46	466	0	ENST00000441802.2:c.7931A>C	p.Glu2644Ala	p.E2644A	ENST00000441802	NM_005245.3	2644	gAg/gCg																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187539852	187539852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	173	435	2	ENST00000441802.2:c.7888G>A	p.Asp2630Asn	p.D2630N	ENST00000441802	NM_005245.3	2630	Gac/Aac																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187542531	187542531	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	114	631	0	ENST00000441802.2:c.5209A>C	p.Ile1737Leu	p.I1737L	ENST00000441802	NM_005245.3	1737	Ata/Cta																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187542842	187542842	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	53	510	1	ENST00000441802.2:c.4898A>G	p.Tyr1633Cys	p.Y1633C	ENST00000441802	NM_005245.3	1633	tAt/tGt																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1293664	1293664	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111952055		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	160	362	0	ENST00000310581.5:c.1337G>A	p.Arg446His	p.R446H	ENST00000310581	NM_198253.2	446	cGt/cAt																																													NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35873655	35873655	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	125	567	0	ENST00000303115.3:c.611A>C	p.Lys204Thr	p.K204T	ENST00000303115	NM_002185.3	204	aAa/aCa																																													NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35876361	35876361	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	35	378	0	ENST00000303115.3:c.1153T>G	p.Ser385Ala	p.S385A	ENST00000303115	NM_002185.3	385	Tcc/Gcc																																													NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35876393	35876393	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	135	390	2	ENST00000303115.3:c.1185G>T	p.Lys395Asn	p.K395N	ENST00000303115	NM_002185.3	395	aaG/aaT																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38982073	38982073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	143	431	0	ENST00000357387.3:c.649G>A	p.Asp217Asn	p.D217N	ENST00000357387	NM_152756.3	217	Gat/Aat																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	39002645	39002645	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	107	377	0	ENST00000357387.3:c.384A>C	p.Leu128Phe	p.L128F	ENST00000357387	NM_152756.3	128	ttA/ttC																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56178439	56178439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	49	536	1	ENST00000399503.3:c.3412G>T	p.Ala1138Ser	p.A1138S	ENST00000399503	NM_005921.1	1138	Gca/Tca																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	323	413	2	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173350	112173350	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	167	571	0	ENST00000257430.4:c.2059C>A	p.Leu687Ile	p.L687I	ENST00000257430	NM_000038.5	687	Ctc/Atc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	128	393	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174236	112174236	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139773221		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	217	571	0	ENST00000257430.4:c.2945C>T	p.Ser982Leu	p.S982L	ENST00000257430	NM_000038.5	982	tCg/tTg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174802	112174802	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201830995		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	166	476	0	ENST00000257430.4:c.3511C>T	p.Arg1171Cys	p.R1171C	ENST00000257430	NM_000038.5	1171	Cgt/Tgt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174959	112174959	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	158	426	0	ENST00000257430.4:c.3668C>A	p.Ser1223Tyr	p.S1223Y	ENST00000257430	NM_000038.5	1223	tCt/tAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112176020	112176020	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	149	401	0	ENST00000257430.4:c.4729G>T	p.Glu1577Ter	p.E1577*	ENST00000257430	NM_000038.5	1577	Gaa/Taa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112176706	112176706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	166	458	0	ENST00000257430.4:c.5415C>A	p.Phe1805Leu	p.F1805L	ENST00000257430	NM_000038.5	1805	ttC/ttA																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112177203	112177203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	96	415	0	ENST00000257430.4:c.5912C>A	p.Ser1971Tyr	p.S1971Y	ENST00000257430	NM_000038.5	1971	tCt/tAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112178606	112178606	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1311878041		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	169	483	1	ENST00000257430.4:c.7315C>T	p.Arg2439Cys	p.R2439C	ENST00000257430	NM_000038.5	2439	Cgc/Tgc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112179516	112179516	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	194	514	0	ENST00000257430.4:c.8225A>G	p.Gln2742Arg	p.Q2742R	ENST00000257430	NM_000038.5	2742	cAa/cGa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112179520	112179520	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	171	509	0	ENST00000257430.4:c.8229T>G	p.Asn2743Lys	p.N2743K	ENST00000257430	NM_000038.5	2743	aaT/aaG																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131924411	131924411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	145	417	0	ENST00000265335.6:c.1084G>T	p.Glu362Ter	p.E362*	ENST00000265335		362	Gaa/Taa																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131939134	131939134	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	151	640	0	ENST00000265335.6:c.2350A>C	p.Ser784Arg	p.S784R	ENST00000265335		784	Agt/Cgt																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149495372	149495372	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146614144		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	180	435	0	ENST00000261799.4:c.3275C>T	p.Ser1092Leu	p.S1092L	ENST00000261799	NM_002609.3	1092	tCg/tTg																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176637295	176637295	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201702515		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	186	494	0	ENST00000439151.2:c.1895G>A	p.Arg632Gln	p.R632Q	ENST00000439151	NM_022455.4	632	cGa/cAa																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176673753	176673753	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1043	276	601	0	ENST00000439151.2:c.4453A>C	p.Lys1485Gln	p.K1485Q	ENST00000439151	NM_022455.4	1485	Aaa/Caa																																													NEWRECORD																																		
E2F3	1871	MSKCC	GRCh37	6	20483060	20483060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	182	520	1	ENST00000346618.3:c.793G>A	p.Glu265Lys	p.E265K	ENST00000346618	NM_001949.4	265	Gag/Aag																																													NEWRECORD																																		
HIST1H1C	3006	MSKCC	GRCh37	6	26056189	26056189	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	53	459	0	ENST00000343677.2:c.468G>T	p.Lys156Asn	p.K156N	ENST00000343677	NM_005319.3	156	aaG/aaT																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30671212	30671212	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1373	106	709	1	ENST00000376406.3:c.5665G>T	p.Glu1889Ter	p.E1889*	ENST00000376406	NM_014641.2	1889	Gaa/Taa																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30671985	30671985	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1370	75	669	0	ENST00000376406.3:c.4975G>T	p.Asp1659Tyr	p.D1659Y	ENST00000376406	NM_014641.2	1659	Gat/Tat																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30675596	30675596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1247	311	879	0	ENST00000376406.3:c.2760G>T	p.Glu920Asp	p.E920D	ENST00000376406	NM_014641.2	920	gaG/gaT																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32166773	32166773	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1231739465		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	232	519	1	ENST00000375023.3:c.4465C>T	p.Arg1489Ter	p.R1489*	ENST00000375023	NM_004557.3	1489	Cga/Tga																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32172162	32172162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	200	383	0	ENST00000375023.3:c.2870C>T	p.Ala957Val	p.A957V	ENST00000375023	NM_004557.3	957	gCc/gTc																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32178537	32178537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	159	435	0	ENST00000375023.3:c.2857C>A	p.Leu953Ile	p.L953I	ENST00000375023	NM_004557.3	953	Ctc/Atc																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	93973599	93973599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1103	257	652	2	ENST00000369303.4:c.1777G>A	p.Asp593Asn	p.D593N	ENST00000369303	NM_004440.3	593	Gat/Aat																																													NEWRECORD																																		
PRDM1	639	MSKCC	GRCh37	6	106553781	106553781	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	75	430	0	ENST00000369096.4:c.1746G>T	p.Lys582Asn	p.K582N	ENST00000369096	NM_001198.3	582	aaG/aaT																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117609933	117609933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	88	537	0	ENST00000368508.3:c.6766G>T	p.Asp2256Tyr	p.D2256Y	ENST00000368508	NM_002944.2	2256	Gat/Tat																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117631345	117631345	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	183	586	0	ENST00000368508.3:c.6333A>C	p.Lys2111Asn	p.K2111N	ENST00000368508	NM_002944.2	2111	aaA/aaC																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117642486	117642486	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	231	652	0	ENST00000368508.3:c.5713G>T	p.Glu1905Ter	p.E1905*	ENST00000368508	NM_002944.2	1905	Gag/Tag																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117662397	117662397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	160	487	0	ENST00000368508.3:c.4980G>T	p.Glu1660Asp	p.E1660D	ENST00000368508	NM_002944.2	1660	gaG/gaT																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117687329	117687329	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	211	570	0	ENST00000368508.3:c.2722G>T	p.Glu908Ter	p.E908*	ENST00000368508	NM_002944.2	908	Gaa/Taa																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117706977	117706977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	212	510	1	ENST00000368508.3:c.2173G>A	p.Asp725Asn	p.D725N	ENST00000368508	NM_002944.2	725	Gac/Aac																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117715410	117715410	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	202	559	0	ENST00000368508.3:c.1079G>T	p.Arg360Ile	p.R360I	ENST00000368508	NM_002944.2	360	aGa/aTa																																													NEWRECORD																																		
IFNGR1	3459	MSKCC	GRCh37	6	137519560	137519560	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	76	415	0	ENST00000367739.4:c.1078G>T	p.Glu360Ter	p.E360*	ENST00000367739	NM_000416.2	360	Gaa/Taa																																													NEWRECORD																																		
IFNGR1	3459	MSKCC	GRCh37	6	137528188	137528188	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	147	448	0	ENST00000367739.4:c.112G>T	p.Glu38Ter	p.E38*	ENST00000367739	NM_000416.2	38	Gaa/Taa																																													NEWRECORD																																		
TNFAIP3	7128	MSKCC	GRCh37	6	138196847	138196847	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	75	481	0	ENST00000237289.4:c.509A>C	p.Asn170Thr	p.N170T	ENST00000237289	NM_001270507.1	170	aAt/aCt																																													NEWRECORD																																		
TNFAIP3	7128	MSKCC	GRCh37	6	138199594	138199594	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	81	351	0	ENST00000237289.4:c.1012G>T	p.Glu338Ter	p.E338*	ENST00000237289	NM_001270507.1	338	Gaa/Taa																																													NEWRECORD																																		
TNFAIP3	7128	MSKCC	GRCh37	6	138200479	138200479	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	127	295	0	ENST00000237289.4:c.1897G>T	p.Glu633Ter	p.E633*	ENST00000237289	NM_001270507.1	633	Gaa/Taa																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	150005269	150005269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	145	543	2	ENST00000253339.5:c.956G>A	p.Gly319Asp	p.G319D	ENST00000253339		319	gGc/gAc																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152265313	152265313	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	106	462	0	ENST00000206249.3:c.766C>T	p.Arg256Ter	p.R256*	ENST00000206249	NM_000125.3	256	Cga/Tga																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152415580	152415580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	83	626	0	ENST00000206249.3:c.1430G>A	p.Arg477Gln	p.R477Q	ENST00000206249	NM_000125.3	477	cGa/cAa																																													NEWRECORD																																		
PARK2	5071	MSKCC	GRCh37	6	162683734	162683734	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	83	436	0	ENST00000366898.1:c.235G>T	p.Glu79Ter	p.E79*	ENST00000366898	NM_004562.2	79	Gaa/Taa																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2949715	2949715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	238	651	2	ENST00000396946.4:c.3229C>T	p.Arg1077Trp	p.R1077W	ENST00000396946	NM_032415.4	1077	Cgg/Tgg																																													NEWRECORD																																		
PMS2	5395	MSKCC	GRCh37	7	6026643	6026643	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	240	553	0	ENST00000265849.7:c.1753C>A	p.Leu585Ile	p.L585I	ENST00000265849	NM_000535.5	585	Ctt/Att																																													NEWRECORD																																		
PMS2	5395	MSKCC	GRCh37	7	6029548	6029548	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	174	480	0	ENST00000265849.7:c.1027A>T	p.Ile343Phe	p.I343F	ENST00000265849	NM_000535.5	343	Att/Ttt																																													NEWRECORD																																		
ETV1	2115	MSKCC	GRCh37	7	14026296	14026296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	99	316	0	ENST00000405192.2:c.148C>A	p.Leu50Ile	p.L50I	ENST00000405192	NM_001163147.1	50	Cta/Ata																																													NEWRECORD																																		
INHBA	3624	MSKCC	GRCh37	7	41729535	41729535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1467	106	743	0	ENST00000242208.4:c.994G>A	p.Asp332Asn	p.D332N	ENST00000242208	NM_002192.2	332	Gac/Aac																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81358932	81358932	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	115	440	0	ENST00000222390.5:c.1029T>A	p.Asn343Lys	p.N343K	ENST00000222390	NM_000601.4	343	aaT/aaA																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106509045	106509045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	182	437	0	ENST00000359195.3:c.1039G>A	p.Glu347Lys	p.E347K	ENST00000359195	NM_002649.2	347	Gag/Aag																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106545740	106545740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	177	592	1	ENST00000359195.3:c.3217G>A	p.Glu1073Lys	p.E1073K	ENST00000359195	NM_002649.2	1073	Gaa/Aaa																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140500207	140500207	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	168	458	0	ENST00000288602.6:c.935T>C	p.Leu312Pro	p.L312P	ENST00000288602	NM_004333.4	312	cTa/cCa																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151859941	151859941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	173	541	0	ENST00000262189.6:c.10721C>A	p.Ser3574Tyr	p.S3574Y	ENST00000262189	NM_170606.2	3574	tCt/tAt																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151873309	151873309	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145953124		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1003	201	457	1	ENST00000262189.6:c.9229C>T	p.Arg3077Cys	p.R3077C	ENST00000262189	NM_170606.2	3077	Cgt/Tgt																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151873626	151873626	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	41	369	0	ENST00000262189.6:c.8912C>A	p.Ser2971Tyr	p.S2971Y	ENST00000262189	NM_170606.2	2971	tCt/tAt																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151874046	151874046	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	208	628	2	ENST00000262189.6:c.8492C>A	p.Ser2831Tyr	p.S2831Y	ENST00000262189	NM_170606.2	2831	tCt/tAt																																													NEWRECORD																																		
FGFR1	2260	MSKCC	GRCh37	8	38279458	38279458	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	124	378	0	ENST00000425967.3:c.1031C>T	p.Thr344Ile	p.T344I	ENST00000425967	NM_001174067.1	344	aCt/aTt																																													NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90971022	90971022	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	201	491	0	ENST00000265433.3:c.1055T>G	p.Leu352Arg	p.L352R	ENST00000265433	NM_002485.4	352	cTa/cGa																																													NEWRECORD																																		
RAD21	5885	MSKCC	GRCh37	8	117866702	117866702	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	353	496	1	ENST00000297338.2:c.943G>T	p.Glu315Ter	p.E315*	ENST00000297338	NM_006265.2	315	Gaa/Taa																																													NEWRECORD																																		
RAD21	5885	MSKCC	GRCh37	8	117875450	117875450	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	259	737	0	ENST00000297338.2:c.193C>T	p.Arg65Ter	p.R65*	ENST00000297338	NM_006265.2	65	Cga/Tga																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8436600	8436600	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	50	495	1	ENST00000356435.5:c.4078G>T	p.Glu1360Ter	p.E1360*	ENST00000356435		1360	Gaa/Taa																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8521481	8521481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	157	511	1	ENST00000356435.5:c.757G>A	p.Val253Ile	p.V253I	ENST00000356435		253	Gtt/Att																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8528711	8528711	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774617096		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	65	514	0	ENST00000356435.5:c.421C>T	p.Arg141Cys	p.R141C	ENST00000356435		141	Cgc/Tgc																																													NEWRECORD																																		
GNAQ	2776	MSKCC	GRCh37	9	80343439	80343439	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	140	295	0	ENST00000286548.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000286548	NM_002072.3	294	Gaa/Taa																																													NEWRECORD																																		
TGFBR1	7046	MSKCC	GRCh37	9	101908829	101908829	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200657153		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	175	498	0	ENST00000374994.4:c.1193G>A	p.Arg398His	p.R398H	ENST00000374994	NM_004612.2	398	cGt/cAt																																													NEWRECORD																																		
TGFBR1	7046	MSKCC	GRCh37	9	101908877	101908877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	149	480	0	ENST00000374994.4:c.1241G>A	p.Arg414Gln	p.R414Q	ENST00000374994	NM_004612.2	414	cGa/cAa																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135781416	135781416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1249	359	820	1	ENST00000298552.3:c.1549C>T	p.Arg517Trp	p.R517W	ENST00000298552	NM_001162426.1	517	Cgg/Tgg																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115815	8115815	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	264	624	1	ENST00000346208.3:c.1161G>T	p.Lys387Asn	p.K387N	ENST00000346208		387	aaG/aaT																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63829499	63829499	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	128	411	0	ENST00000279873.7:c.1142T>G	p.Leu381Ter	p.L381*	ENST00000279873	NM_032199.2	381	tTa/tGa																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70333080	70333080	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	199	558	0	ENST00000373644.4:c.985T>C	p.Phe329Leu	p.F329L	ENST00000373644	NM_030625.2	329	Ttc/Ctc																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70333863	70333863	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	154	464	1	ENST00000373644.4:c.1768C>T	p.Arg590Ter	p.R590*	ENST00000373644	NM_030625.2	590	Cga/Tga																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70404693	70404693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	91	479	0	ENST00000373644.4:c.2207C>T	p.Ser736Leu	p.S736L	ENST00000373644	NM_030625.2	736	tCg/tTg																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70404862	70404862	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	135	429	0	ENST00000373644.4:c.2376A>C	p.Lys792Asn	p.K792N	ENST00000373644	NM_030625.2	792	aaA/aaC																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70405080	70405080	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	220	574	0	ENST00000373644.4:c.2594A>C	p.Lys865Thr	p.K865T	ENST00000373644	NM_030625.2	865	aAa/aCa																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70405349	70405349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	175	476	0	ENST00000373644.4:c.2863C>T	p.His955Tyr	p.H955Y	ENST00000373644	NM_030625.2	955	Cac/Tac																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70411602	70411602	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	153	420	0	ENST00000373644.4:c.4277-1G>T		p.X1426_splice	ENST00000373644	NM_030625.2	1426																																														NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89685311	89685311	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	60	268	0	ENST00000371953.3:c.206A>C	p.Asn69Thr	p.N69T	ENST00000371953	NM_000314.4	69	aAt/aCt																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720711	89720711	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	15	51	0	ENST00000371953.3:c.862G>T	p.Glu288Ter	p.E288*	ENST00000371953	NM_000314.4	288	Gaa/Taa																																													NEWRECORD																																		
FGFR2	2263	MSKCC	GRCh37	10	123239508	123239508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1499	91	890	1	ENST00000358487.5:c.2329G>A	p.Glu777Lys	p.E777K	ENST00000358487	NM_000141.4	777	Gaa/Aaa																																													NEWRECORD																																		
FGFR2	2263	MSKCC	GRCh37	10	123247555	123247555	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	236	504	0	ENST00000358487.5:c.1936G>T	p.Gly646Ter	p.G646*	ENST00000358487	NM_000141.4	646	Gga/Tga																																													NEWRECORD																																		
FGFR2	2263	MSKCC	GRCh37	10	123310821	123310821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			954	209	558	0	ENST00000358487.5:c.607C>T	p.Arg203Cys	p.R203C	ENST00000358487	NM_000141.4	203	Cgc/Tgc																																													NEWRECORD																																		
MYOD1	4654	MSKCC	GRCh37	11	17742934	17742934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	27	333	1	ENST00000250003.3:c.842G>A	p.Arg281His	p.R281H	ENST00000250003	NM_002478.4	281	cGc/cAc																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64573813	64573813	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139936447		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	185	420	1	ENST00000337652.1:c.955C>T	p.Arg319Trp	p.R319W	ENST00000337652	NM_130803.2	319	Cgg/Tgg																																													NEWRECORD																																		
PAK1	5058	MSKCC	GRCh37	11	77047231	77047231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	170	578	2	ENST00000356341.3:c.1313G>A	p.Arg438Gln	p.R438Q	ENST00000356341	NM_002576.4	438	cGa/cAa																																													NEWRECORD																																		
PAK1	5058	MSKCC	GRCh37	11	77085386	77085386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	213	511	0	ENST00000356341.3:c.464C>A	p.Ser155Tyr	p.S155Y	ENST00000356341	NM_002576.4	155	tCt/tAt																																													NEWRECORD																																		
MRE11A	4361	MSKCC	GRCh37	11	94170371	94170371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	189	420	1	ENST00000323929.3:c.1898G>A	p.Arg633Gln	p.R633Q	ENST00000323929	NM_005591.3	633	cGa/cAa																																													NEWRECORD																																		
MRE11A	4361	MSKCC	GRCh37	11	94192696	94192696	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	152	355	0	ENST00000323929.3:c.1378G>T	p.Glu460Ter	p.E460*	ENST00000323929	NM_005591.3	460	Gaa/Taa																																													NEWRECORD																																		
MRE11A	4361	MSKCC	GRCh37	11	94224018	94224018	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	200	497	0	ENST00000323929.3:c.134G>T	p.Arg45Ile	p.R45I	ENST00000323929	NM_005591.3	45	aGa/aTa																																													NEWRECORD																																		
PGR	5241	MSKCC	GRCh37	11	100933252	100933252	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1136	271	780	2	ENST00000325455.5:c.2138C>A	p.Ser713Tyr	p.S713Y	ENST00000325455	NM_001202474.3	713	tCt/tAt																																													NEWRECORD																																		
PGR	5241	MSKCC	GRCh37	11	100933270	100933270	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1160	274	793	0	ENST00000325455.5:c.2120A>C	p.Lys707Thr	p.K707T	ENST00000325455	NM_001202474.3	707	aAa/aCa																																													NEWRECORD																																		
PGR	5241	MSKCC	GRCh37	11	100996829	100996829	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	229	679	0	ENST00000325455.5:c.1698T>G	p.Ile566Met	p.I566M	ENST00000325455	NM_001202474.3	566	atT/atG																																													NEWRECORD																																		
YAP1	10413	MSKCC	GRCh37	11	102056798	102056798	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	195	541	0	ENST00000282441.5:c.738T>G	p.Ile246Met	p.I246M	ENST00000282441	NM_001130145.2	246	atT/atG																																													NEWRECORD																																		
BIRC3	330	MSKCC	GRCh37	11	102201936	102201936	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1423	327	930	2	ENST00000263464.3:c.1288G>T	p.Glu430Ter	p.E430*	ENST00000263464	NM_001165.4	430	Gag/Tag																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	187	497	0	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108122668	108122668	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	164	518	0	ENST00000278616.4:c.1712C>A	p.Ser571Tyr	p.S571Y	ENST00000278616	NM_000051.3	571	tCt/tAt																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108124599	108124599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	169	489	0	ENST00000278616.4:c.1957C>A	p.Leu653Ile	p.L653I	ENST00000278616	NM_000051.3	653	Ctt/Att																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108196197	108196197	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	185	452	0	ENST00000278616.4:c.6733G>T	p.Glu2245Ter	p.E2245*	ENST00000278616	NM_000051.3	2245	Gaa/Taa																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108201008	108201008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	178	492	0	ENST00000278616.4:c.7375C>T	p.Arg2459Cys	p.R2459C	ENST00000278616	NM_000051.3	2459	Cgt/Tgt																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108205711	108205711	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	120	330	0	ENST00000278616.4:c.8026G>T	p.Glu2676Ter	p.E2676*	ENST00000278616	NM_000051.3	2676	Gaa/Taa																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118342539	118342539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1083	218	661	1	ENST00000534358.1:c.665G>T	p.Arg222Ile	p.R222I	ENST00000534358	NM_005933.3	222	aGa/aTa																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118373664	118373664	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	60	534	0	ENST00000534358.1:c.7057T>G	p.Ser2353Ala	p.S2353A	ENST00000534358	NM_005933.3	2353	Tcc/Gcc																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118373689	118373689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	203	505	2	ENST00000534358.1:c.7082C>T	p.Ser2361Leu	p.S2361L	ENST00000534358	NM_005933.3	2361	tCg/tTg																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118376455	118376455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	165	455	1	ENST00000534358.1:c.9848G>T	p.Arg3283Leu	p.R3283L	ENST00000534358	NM_005933.3	3283	cGa/cTa																																													NEWRECORD																																		
CBL	867	MSKCC	GRCh37	11	119169238	119169238	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	91	301	0	ENST00000264033.4:c.2422G>T	p.Asp808Tyr	p.D808Y	ENST00000264033	NM_005188.3	808	Gat/Tat																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	431665	431665	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	214	483	0	ENST00000399788.2:c.2344C>T	p.Arg782Ter	p.R782*	ENST00000399788	NM_001042603.1	782	Cga/Tga																																													NEWRECORD																																		
RAD52	5893	MSKCC	GRCh37	12	1023606	1023606	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	249	535	0	ENST00000358495.3:c.958G>T	p.Glu320Ter	p.E320*	ENST00000358495	NM_134424.2	320	Gaa/Taa																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18650557	18650557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	147	498	0	ENST00000266497.5:c.2768G>A	p.Gly923Glu	p.G923E	ENST00000266497		923	gGa/gAa																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18658375	18658375	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	143	472	0	ENST00000266497.5:c.3180A>C	p.Gln1060His	p.Q1060H	ENST00000266497		1060	caA/caC																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18699296	18699296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	175	557	0	ENST00000266497.5:c.3397G>T	p.Asp1133Tyr	p.D1133Y	ENST00000266497		1133	Gac/Tac																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	161	388	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46246026	46246026	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	151	563	0	ENST00000334344.6:c.4120A>G	p.Lys1374Glu	p.K1374E	ENST00000334344	NM_152641.2	1374	Aaa/Gaa																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49425896	49425896	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	178	552	1	ENST00000301067.7:c.12592C>T	p.Arg4198Ter	p.R4198*	ENST00000301067	NM_003482.3	4198	Cga/Tga																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49426198	49426198	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	113	369	0	ENST00000301067.7:c.12290T>G	p.Leu4097Arg	p.L4097R	ENST00000301067	NM_003482.3	4097	cTt/cGt																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57863296	57863296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1321	110	800	2	ENST00000228682.2:c.1391G>T	p.Gly464Val	p.G464V	ENST00000228682	NM_005269.2	464	gGt/gTt																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57864647	57864647	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1245	216	855	0	ENST00000228682.2:c.2124A>C	p.Glu708Asp	p.E708D	ENST00000228682	NM_005269.2	708	gaA/gaC																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	216	530	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133256623	133256623	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	207	505	2	ENST00000320574.5:c.340C>T	p.Arg114Ter	p.R114*	ENST00000320574	NM_006231.2	114	Cga/Tga																																													NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28601301	28601301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	203	584	0	ENST00000241453.7:c.2131C>A	p.His711Asn	p.H711N	ENST00000241453	NM_004119.2	711	Cac/Aac																																													NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28601361	28601361	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	147	471	0	ENST00000241453.7:c.2071T>G	p.Phe691Val	p.F691V	ENST00000241453	NM_004119.2	691	Ttt/Gtt																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32912484	32912484	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1279	129	760	0	ENST00000380152.3:c.3992C>A	p.Ser1331Tyr	p.S1331Y	ENST00000380152		1331	tCt/tAt																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32912525	32912525	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1362	81	724	1	ENST00000380152.3:c.4033G>T	p.Asp1345Tyr	p.D1345Y	ENST00000380152		1345	Gat/Tat																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32915255	32915255	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1202	289	805	0	ENST00000380152.3:c.6763A>G	p.Thr2255Ala	p.T2255A	ENST00000380152		2255	Aca/Gca																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32953964	32953964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	112	438	0	ENST00000380152.3:c.9031C>A	p.Leu3011Ile	p.L3011I	ENST00000380152		3011	Ctt/Att																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48881438	48881438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	150	410	0	ENST00000267163.4:c.160G>A	p.Glu54Lys	p.E54K	ENST00000267163	NM_000321.2	54	Gaa/Aaa																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48939054	48939054	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	91	402	0	ENST00000267163.4:c.886T>G	p.Phe296Val	p.F296V	ENST00000267163	NM_000321.2	296	Ttt/Gtt																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	49033829	49033829	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142509759		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	139	441	1	ENST00000267163.4:c.1966C>T	p.Arg656Trp	p.R656W	ENST00000267163	NM_000321.2	656	Cgg/Tgg																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73337650	73337650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	224	498	0	ENST00000377767.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000377767	NM_014953.3	689	cGa/cAa																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73351596	73351596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	235	472	0	ENST00000377767.4:c.616G>A	p.Glu206Lys	p.E206K	ENST00000377767	NM_014953.3	206	Gaa/Aaa																																													NEWRECORD																																		
TSHR	7253	MSKCC	GRCh37	14	81609467	81609467	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1089	205	654	0	ENST00000298171.2:c.1065C>A	p.Phe355Leu	p.F355L	ENST00000298171	NM_000369.2	355	ttC/ttA																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95557672	95557672	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	126	422	0	ENST00000343455.3:c.5395G>T	p.Glu1799Ter	p.E1799*	ENST00000343455	NM_177438.2	1799	Gaa/Taa																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95562462	95562462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	41	413	1	ENST00000343455.3:c.4795C>T	p.Arg1599Trp	p.R1599W	ENST00000343455	NM_177438.2	1599	Cgg/Tgg																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95577679	95577679	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1121	187	670	0	ENST00000343455.3:c.2231A>G	p.Lys744Arg	p.K744R	ENST00000343455	NM_177438.2	744	aAa/aGa																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95582819	95582819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	117	347	0	ENST00000343455.3:c.1723G>A	p.Asp575Asn	p.D575N	ENST00000343455	NM_177438.2	575	Gac/Aac																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95595941	95595941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	136	355	0	ENST00000343455.3:c.602G>A	p.Arg201His	p.R201H	ENST00000343455	NM_177438.2	201	cGc/cAc																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	41961867	41961867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1224	202	811	4	ENST00000219905.7:c.775C>T	p.Arg259Trp	p.R259W	ENST00000219905	NM_001164273.1	259	Cgg/Tgg																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	41988772	41988772	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1476	80	810	0	ENST00000219905.7:c.1564T>G	p.Leu522Val	p.L522V	ENST00000219905	NM_001164273.1	522	Tta/Gta																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42042178	42042178	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1353	399	959	1	ENST00000219905.7:c.6373G>T	p.Glu2125Ter	p.E2125*	ENST00000219905	NM_001164273.1	2125	Gaa/Taa																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42054338	42054338	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1109	156	655	0	ENST00000219905.7:c.7522G>T	p.Glu2508Ter	p.E2508*	ENST00000219905	NM_001164273.1	2508	Gaa/Taa																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42058765	42058765	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	247	701	1	ENST00000219905.7:c.8485G>T	p.Glu2829Ter	p.E2829*	ENST00000219905	NM_001164273.1	2829	Gaa/Taa																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007763	45007763	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	174	560	0	ENST00000558401.1:c.210G>T	p.Glu70Asp	p.E70D	ENST00000558401	NM_004048.2	70	gaG/gaT																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007876	45007876	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	65	342	1	ENST00000558401.1:c.323C>A	p.Ser108Ter	p.S108*	ENST00000558401	NM_004048.2	108	tCa/tAa																																													NEWRECORD																																		
MAP2K1	5604	MSKCC	GRCh37	15	66729090	66729090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	257	569	0	ENST00000307102.5:c.298C>A	p.His100Asn	p.H100N	ENST00000307102	NM_002755.3	100	Cat/Aat																																													NEWRECORD																																		
MAP2K1	5604	MSKCC	GRCh37	15	66782859	66782859	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	212	485	0	ENST00000307102.5:c.1088G>T	p.Arg363Ile	p.R363I	ENST00000307102	NM_002755.3	363	aGa/aTa																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88483966	88483966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	168	497	0	ENST00000360948.2:c.1604G>T	p.Arg535Met	p.R535M	ENST00000360948	NM_001012338.2	535	aGg/aTg																																													NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91310233	91310233	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	171	439	0	ENST00000355112.3:c.2287C>A	p.Leu763Ile	p.L763I	ENST00000355112	NM_000057.2	763	Cta/Ata																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99454583	99454583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	57	487	0	ENST00000268035.6:c.1502C>T	p.Ser501Leu	p.S501L	ENST00000268035	NM_000875.3	501	tCg/tTg																																													NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	347200	347200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	191	412	0	ENST00000262320.3:c.1811G>T	p.Arg604Ile	p.R604I	ENST00000262320	NM_003502.3	604	aGa/aTa																																													NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	396589	396589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	182	498	0	ENST00000262320.3:c.437G>A	p.Arg146Gln	p.R146Q	ENST00000262320	NM_003502.3	146	cGa/cAa																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2098655	2098655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1242	75	637	2	ENST00000219476.3:c.39G>T	p.Glu13Asp	p.E13D	ENST00000219476	NM_000548.3	13	gaG/gaT																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3900349	3900349	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	179	512	0	ENST00000262367.5:c.747A>C	p.Gln249His	p.Q249H	ENST00000262367	NM_004380.2	249	caA/caC																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9857948	9857948	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	59	511	2	ENST00000330684.3:c.3453C>A	p.Tyr1151Ter	p.Y1151*	ENST00000330684	NM_001134407.1	1151	taC/taA																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9934798	9934798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	233	649	2	ENST00000330684.3:c.1492G>A	p.Gly498Ser	p.G498S	ENST00000330684	NM_001134407.1	498	Ggt/Agt																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23641217	23641217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	131	421	0	ENST00000261584.4:c.2258G>A	p.Arg753Gln	p.R753Q	ENST00000261584	NM_024675.3	753	cGa/cAa																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23646559	23646559	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	98	263	0	ENST00000261584.4:c.1308G>T	p.Lys436Asn	p.K436N	ENST00000261584	NM_024675.3	436	aaG/aaT																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23647472	23647472	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	48	474	1	ENST00000261584.4:c.395T>C	p.Val132Ala	p.V132A	ENST00000261584	NM_024675.3	132	gTc/gCc																																													NEWRECORD																																		
MAPK3	5595	MSKCC	GRCh37	16	30129459	30129459	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	314	637	0	ENST00000263025.4:c.569T>C	p.Ile190Thr	p.I190T	ENST00000263025	NM_002746.2	190	aTt/aCt																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67670592	67670592	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	75	483	3	ENST00000264010.4:c.1838-1G>T		p.X613_splice	ENST00000264010	NM_006565.3	613																																														NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72821095	72821095	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1219	283	683	1	ENST00000268489.5:c.11080A>G	p.Thr3694Ala	p.T3694A	ENST00000268489	NM_006885.3	3694	Acc/Gcc																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72827706	72827706	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	207	679	0	ENST00000268489.5:c.8875A>G	p.Lys2959Glu	p.K2959E	ENST00000268489	NM_006885.3	2959	Aag/Gag																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72831953	72831953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1492	101	733	0	ENST00000268489.5:c.4628G>A	p.Arg1543His	p.R1543H	ENST00000268489	NM_006885.3	1543	cGc/cAc																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72832272	72832272	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1099	296	654	1	ENST00000268489.5:c.4309A>G	p.Ser1437Gly	p.S1437G	ENST00000268489	NM_006885.3	1437	Agt/Ggt																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81942093	81942093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1366	100	703	2	ENST00000359376.3:c.1630G>A	p.Glu544Lys	p.E544K	ENST00000359376	NM_002661.3	544	Gag/Aag																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81990302	81990302	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	178	494	0	ENST00000359376.3:c.3573G>T	p.Glu1191Asp	p.E1191D	ENST00000359376	NM_002661.3	1191	gaG/gaT																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89348329	89348329	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1366	373	900	2	ENST00000301030.4:c.4621G>T	p.Glu1541Ter	p.E1541*	ENST00000301030	NM_001256183.1	1541	Gaa/Taa																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89866024	89866024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	250	455	0	ENST00000389301.3:c.815G>T	p.Arg272Ile	p.R272I	ENST00000389301	NM_000135.2	272	aGa/aTa																																													NEWRECORD																																		
GPS2	2874	MSKCC	GRCh37	17	7217719	7217719	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1179	263	753	1	ENST00000380728.2:c.208C>A	p.Leu70Met	p.L70M	ENST00000380728		70	Ctg/Atg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	205	551	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1113	264	609	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15974826	15974826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	197	492	0	ENST00000268712.3:c.4049C>A	p.Ser1350Tyr	p.S1350Y	ENST00000268712	NM_006311.3	1350	tCc/tAc																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29508761	29508761	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	169	502	0	ENST00000358273.4:c.688G>T	p.Glu230Ter	p.E230*	ENST00000358273	NM_001042492.2	230	Gaa/Taa																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29509612	29509612	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	132	552	0	ENST00000358273.4:c.817C>A	p.Leu273Ile	p.L273I	ENST00000358273	NM_001042492.2	273	Ctc/Atc																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29550566	29550566	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	142	423	0	ENST00000358273.4:c.1826A>C	p.Lys609Thr	p.K609T	ENST00000358273	NM_001042492.2	609	aAa/aCa																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29676219	29676219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	57	394	3	ENST00000358273.4:c.7271G>T	p.Arg2424Ile	p.R2424I	ENST00000358273	NM_001042492.2	2424	aGa/aTa																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37865572	37865572	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	261	593	0	ENST00000269571.5:c.441G>T	p.Glu147Asp	p.E147D	ENST00000269571		147	gaG/gaT																																													NEWRECORD																																		
RARA	5914	MSKCC	GRCh37	17	38487645	38487645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	60	496	1	ENST00000254066.5:c.175G>A	p.Ala59Thr	p.A59T	ENST00000254066	NM_000964.3	59	Gcc/Acc																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41223001	41223001	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1124	70	639	0	ENST00000357654.3:c.4930G>T	p.Glu1644Ter	p.E1644*	ENST00000357654	NM_007294.3	1644	Gaa/Taa																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41243716	41243716	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1137	60	620	0	ENST00000357654.3:c.3832A>C	p.Lys1278Gln	p.K1278Q	ENST00000357654	NM_007294.3	1278	Aag/Cag																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41243770	41243770	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	209	544	0	ENST00000357654.3:c.3778T>G	p.Leu1260Val	p.L1260V	ENST00000357654	NM_007294.3	1260	Tta/Gta																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41245326	41245326	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	211	500	0	ENST00000357654.3:c.2222C>A	p.Ser741Tyr	p.S741Y	ENST00000357654	NM_007294.3	741	tCt/tAt																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41245825	41245825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	159	448	0	ENST00000357654.3:c.1723G>A	p.Glu575Lys	p.E575K	ENST00000357654	NM_007294.3	575	Gaa/Aaa																																													NEWRECORD																																		
HOXB13	10481	MSKCC	GRCh37	17	46805697	46805697	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	69	392	1	ENST00000290295.7:c.259T>C	p.Tyr87His	p.Y87H	ENST00000290295	NM_006361.5	87	Tac/Cac																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56440930	56440930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	255	538	1	ENST00000407977.2:c.407C>T	p.Ala136Val	p.A136V	ENST00000407977		136	gCt/gTt																																													NEWRECORD																																		
RAD51C	5889	MSKCC	GRCh37	17	56772395	56772395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	239	593	0	ENST00000337432.4:c.249G>T	p.Lys83Asn	p.K83N	ENST00000337432	NM_058216.2	83	aaG/aaT																																													NEWRECORD																																		
RAD51C	5889	MSKCC	GRCh37	17	56772468	56772468	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	164	503	0	ENST00000337432.4:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000337432	NM_058216.2	108	Gat/Tat																																													NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58725277	58725277	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1180	116	687	1	ENST00000305921.3:c.851T>C	p.Phe284Ser	p.F284S	ENST00000305921	NM_003620.3	284	tTc/tCc																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59761173	59761173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	155	521	0	ENST00000259008.2:c.3234G>T	p.Lys1078Asn	p.K1078N	ENST00000259008	NM_032043.2	1078	aaG/aaT																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59761411	59761411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	68	378	0	ENST00000259008.2:c.2996G>T	p.Arg999Ile	p.R999I	ENST00000259008	NM_032043.2	999	aGa/aTa																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59821930	59821930	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200313471		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	167	456	0	ENST00000259008.2:c.2120G>A	p.Arg707His	p.R707H	ENST00000259008	NM_032043.2	707	cGt/cAt																																													NEWRECORD																																		
YES1	7525	MSKCC	GRCh37	18	743272	743272	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs188857712		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	187	558	1	ENST00000314574.4:c.868G>A	p.Glu290Lys	p.E290K	ENST00000314574	NM_005433.3	290	Gaa/Aaa																																													NEWRECORD																																		
YES1	7525	MSKCC	GRCh37	18	751726	751726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	105	362	0	ENST00000314574.4:c.350G>T	p.Arg117Ile	p.R117I	ENST00000314574	NM_005433.3	117	aGa/aTa																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	163	487	1	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2180724	2180724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	256	580	0	ENST00000398665.3:c.94G>A	p.Asp32Asn	p.D32N	ENST00000398665	NM_032482.2	32	Gat/Aat																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5220045	5220045	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145842090		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	209	565	1	ENST00000357368.4:c.3670G>A	p.Asp1224Asn	p.D1224N	ENST00000357368	NM_002850.3	1224	Gac/Aac																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5265175	5265175	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147257283		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	157	541	0	ENST00000357368.4:c.412G>A	p.Asp138Asn	p.D138N	ENST00000357368	NM_002850.3	138	Gac/Aac																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11098351	11098351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	158	474	1	ENST00000344626.4:c.869C>T	p.Ala290Val	p.A290V	ENST00000344626	NM_003072.3	290	gCg/gTg																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15276316	15276316	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372834264		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	163	452	0	ENST00000263388.2:c.5678G>A	p.Arg1893Gln	p.R1893Q	ENST00000263388	NM_000435.2	1893	cGa/cAa																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15291527	15291527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	224	479	1	ENST00000263388.2:c.3107G>A	p.Arg1036Gln	p.R1036Q	ENST00000263388	NM_000435.2	1036	cGa/cAa																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41745625	41745625	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1107	111	583	0	ENST00000301178.4:c.1312G>A	p.Val438Met	p.V438M	ENST00000301178	NM_021913.4	438	Gtg/Atg																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41749591	41749591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	318	622	1	ENST00000301178.4:c.1516C>T	p.Arg506Cys	p.R506C	ENST00000301178	NM_021913.4	506	Cgt/Tgt																																													NEWRECORD																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52729220	52729220	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	63	504	0	ENST00000322088.6:c.1756C>A	p.Leu586Met	p.L586M	ENST00000322088	NM_014225.5	586	Ctg/Atg																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31021700	31021700	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	79	255	2	ENST00000375687.4:c.1699C>A	p.Pro567Thr	p.P567T	ENST00000375687	NM_015338.5	567	Ccc/Acc																																													NEWRECORD																																		
SRC	6714	MSKCC	GRCh37	20	36028627	36028627	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	214	630	0	ENST00000358208.4:c.969G>T	p.Glu323Asp	p.E323D	ENST00000358208		323	gaG/gaT																																													NEWRECORD																																		
TOP1	7150	MSKCC	GRCh37	20	39729850	39729850	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	58	382	1	ENST00000361337.2:c.1165G>T	p.Asp389Tyr	p.D389Y	ENST00000361337	NM_003286.2	389	Gat/Tat																																													NEWRECORD																																		
TOP1	7150	MSKCC	GRCh37	20	39744970	39744970	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	428	579	0	ENST00000361337.2:c.1760A>G	p.Lys587Arg	p.K587R	ENST00000361337	NM_003286.2	587	aAg/aGg																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40733283	40733283	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	148	375	0	ENST00000373198.4:c.3523T>G	p.Phe1175Val	p.F1175V	ENST00000373198	NM_133170.3	1175	Ttc/Gtc																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40743943	40743943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	249	405	1	ENST00000373198.4:c.3052C>T	p.Arg1018Ter	p.R1018*	ENST00000373198	NM_133170.3	1018	Cga/Tga																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40877330	40877330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	111	341	0	ENST00000373198.4:c.2366G>A	p.Arg789Lys	p.R789K	ENST00000373198	NM_133170.3	789	aGg/aAg																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41101118	41101118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751886972		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	331	462	1	ENST00000373198.4:c.1238C>T	p.Ala413Val	p.A413V	ENST00000373198	NM_133170.3	413	gCg/gTg																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41306638	41306638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	176	496	1	ENST00000373198.4:c.1021G>A	p.Asp341Asn	p.D341N	ENST00000373198	NM_133170.3	341	Gac/Aac																																													NEWRECORD																																		
NCOA3	8202	MSKCC	GRCh37	20	46268450	46268450	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1436	188	781	0	ENST00000371998.3:c.2837A>C	p.Asn946Thr	p.N946T	ENST00000371998		946	aAt/aCt																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57485115	57485115	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754097818		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	335	414	0	ENST00000371085.3:c.949C>T	p.Arg317Cys	p.R317C	ENST00000371085	NM_000516.4	317	Cgc/Tgc																																													NEWRECORD																																		
ERG	2078	MSKCC	GRCh37	21	39775575	39775575	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	95	451	1	ENST00000288319.7:c.445G>T	p.Glu149Ter	p.E149*	ENST00000288319	NM_182918.3	149	Gaa/Taa																																													NEWRECORD																																		
MAPK1	5594	MSKCC	GRCh37	22	22162055	22162055	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	55	490	1	ENST00000215832.6:c.200G>T	p.Arg67Ile	p.R67I	ENST00000215832	NM_002745.4	67	aGa/aTa																																													NEWRECORD																																		
SMARCB1	6598	MSKCC	GRCh37	22	24143241	24143241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	279	656	2	ENST00000263121.7:c.473G>A	p.Arg158Gln	p.R158Q	ENST00000263121	NM_003073.3	158	cGa/cAa																																													NEWRECORD																																		
NF2	4771	MSKCC	GRCh37	22	30064321	30064321	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	193	467	0	ENST00000338641.4:c.886-1G>A		p.X296_splice	ENST00000338641	NM_000268.3	296																																														NEWRECORD																																		
EIF1AX	1964	MSKCC	GRCh37	X	20153903	20153903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	207	182	0	ENST00000379607.5:c.157G>A	p.Asp53Asn	p.D53N	ENST00000379607	NM_001412.3	53	Gat/Aat																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39933640	39933640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	225	348	0	ENST00000378444.4:c.959C>T	p.Ala320Val	p.A320V	ENST00000378444	NM_001123385.1	320	gCg/gTg																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53222800	53222800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	77	280	0	ENST00000375401.3:c.4136C>T	p.Ser1379Leu	p.S1379L	ENST00000375401	NM_004187.3	1379	tCg/tTg																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53245277	53245277	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	246	339	0	ENST00000375401.3:c.760G>T	p.Asp254Tyr	p.D254Y	ENST00000375401	NM_004187.3	254	Gac/Tac																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	308	338	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66765275	66765275	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	147	277	0	ENST00000374690.3:c.287C>A	p.Ser96Tyr	p.S96Y	ENST00000374690	NM_000044.3	96	tCt/tAt																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66766441	66766441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	25	118	1	ENST00000374690.3:c.1453C>T	p.Arg485Trp	p.R485W	ENST00000374690	NM_000044.3	485	Cgg/Tgg																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66863204	66863204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	204	318	1	ENST00000374690.3:c.1723C>A	p.Leu575Ile	p.L575I	ENST00000374690	NM_000044.3	575	Ctc/Atc																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70348545	70348545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	265	334	1	ENST00000374080.3:c.3452C>T	p.Ala1151Val	p.A1151V	ENST00000374080		1151	gCc/gTc																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76938090	76938090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	27	245	0	ENST00000373344.5:c.2658G>T	p.Glu886Asp	p.E886D	ENST00000373344	NM_000489.3	886	gaG/gaT																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76938330	76938330	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	134	221	0	ENST00000373344.5:c.2418G>T	p.Lys806Asn	p.K806N	ENST00000373344	NM_000489.3	806	aaG/aaT																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76939584	76939584	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	229	322	0	ENST00000373344.5:c.1164A>C	p.Lys388Asn	p.K388N	ENST00000373344	NM_000489.3	388	aaA/aaC																																													NEWRECORD																																		
XIAP	331	MSKCC	GRCh37	X	123034413	123034413	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	274	294	0	ENST00000355640.3:c.1170G>T	p.Lys390Asn	p.K390N	ENST00000355640		390	aaG/aaT																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123176470	123176470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	405	345	1	ENST00000218089.9:c.437G>A	p.Arg146Gln	p.R146Q	ENST00000218089	NM_001042749.1	146	cGa/cAa																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123215264	123215264	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	332	258	0	ENST00000218089.9:c.2810A>C	p.Asn937Thr	p.N937T	ENST00000218089	NM_001042749.1	937	aAt/aCt																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123220441	123220441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	42	374	0	ENST00000218089.9:c.3098G>A	p.Arg1033Gln	p.R1033Q	ENST00000218089	NM_001042749.1	1033	cGa/cAa																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212568865	212568866	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	170	573	0	ENST00000342788.4:c.1252dup	p.Ser418PhefsTer2	p.S418Ffs*2	ENST00000342788	NM_005235.2	418	tct/tTct																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	168	264	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1220705	1220706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	81	263	0	ENST00000326873.7:c.727dup	p.Val243GlyfsTer23	p.V243Gfs*23	ENST00000326873	NM_000455.4	241	-/G																																													NEWRECORD																																		
E2F3	1871	MSKCC	GRCh37	6	20402702	20402702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	80	293	0	ENST00000346618.3:c.239C>T	p.Ala80Val	p.A80V	ENST00000346618	NM_001949.4	80	gCc/gTc																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70446398	70446398	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	95	324	0	ENST00000373644.4:c.5338C>T	p.Arg1780Ter	p.R1780*	ENST00000373644	NM_030625.2	1780	Cga/Tga																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41100988	41100988	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	36	218	0	ENST00000373198.4:c.1368G>T	p.Met456Ile	p.M456I	ENST00000373198	NM_133170.3	456	atG/atT																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577093	7577094	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGG			P-0008443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	118	362	0	ENST00000269305.4:c.844_845insCCC	p.Asp281_Arg282insPro	p.D281_R282insP	ENST00000269305	NM_001126112.2	282	cgg/cCCCgg																																													NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	60	183	0	ENST00000369535.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000369535	NM_002524.4	12	gGt/gCt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0004904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	114	186	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																													NEWRECORD																																		
VTCN1	79679	MSKCC	GRCh37	1	117695892	117695892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	59	204	0	ENST00000369458.3:c.545C>A	p.Ala182Glu	p.A182E	ENST00000369458	NM_024626.3	182	gCa/gAa																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48575150	48575150	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	84	285	0	ENST00000342988.3:c.344G>C	p.Cys115Ser	p.C115S	ENST00000342988	NM_005359.5	115	tGt/tCt																																													NEWRECORD																																		
AKT2	208	MSKCC	GRCh37	19	40741973	40741973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	146	286	0	ENST00000392038.2:c.999G>C	p.Trp333Cys	p.W333C	ENST00000392038	NM_001626.4	333	tgG/tgC																																													NEWRECORD																																		
NF2	4771	MSKCC	GRCh37	22	30069382	30069382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	202	319	1	ENST00000338641.4:c.1247C>A	p.Ala416Glu	p.A416E	ENST00000338641	NM_000268.3	416	gCg/gAg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108202212	108202213	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGTACCAATTGGCTGCTAGAATGGGGACCA			P-0004904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	74	213	0	ENST00000278616.4:c.7559_7589dup	p.Lys2530AsnfsTer7	p.K2530Nfs*7	ENST00000278616	NM_000051.3	2519	-/ATGTACCAATTGGCTGCTAGAATGGGGACCA																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			655	28	483	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131927568	131927568	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	88	274	0	ENST00000265335.6:c.1636-1G>T		p.X546_splice	ENST00000265335		546																																														NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	59	371	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47165212	47165213	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			625	121	409	0	ENST00000409792.3:c.913dup	p.Thr305AsnfsTer4	p.T305Nfs*4	ENST00000409792	NM_014159.6	305	aca/aAca																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41551118	41551118	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			655	123	450	0	ENST00000263253.7:c.3261+1G>C		p.X1087_splice	ENST00000263253	NM_001429.3	1087																																														NEWRECORD																																		
PARP1	142	MSKCC	GRCh37	1	226552814	226552814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			796	83	405	0	ENST00000366794.5:c.2547G>T	p.Lys849Asn	p.K849N	ENST00000366794	NM_001618.3	849	aaG/aaT																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98248150	98248150	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			509	115	337	0	ENST00000331920.6:c.401G>T	p.Gly134Val	p.G134V	ENST00000331920	NM_000264.3	134	gGa/gTa																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32900387	32900387	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			607	128	440	0	ENST00000380152.3:c.484G>T	p.Gly162Trp	p.G162W	ENST00000380152		162	Ggg/Tgg																																													NEWRECORD																																		
TRAF7	84231	MSKCC	GRCh37	16	2223271	2223271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	43	389	1	ENST00000326181.6:c.883G>A	p.Asp295Asn	p.D295N	ENST00000326181	NM_032271.2	295	Gat/Aat																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41226395	41226395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			740	154	489	0	ENST00000357654.3:c.4628G>T	p.Gly1543Val	p.G1543V	ENST00000357654	NM_007294.3	1543	gGg/gTg																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2216763	2216763	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	51	161	0	ENST00000398665.3:c.2407A>T	p.Arg803Ter	p.R803*	ENST00000398665	NM_032482.2	803	Aga/Tga																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10597492	10597492	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			504	110	369	0	ENST00000171111.5:c.1711G>C	p.Gly571Arg	p.G571R	ENST00000171111	NM_203500.1	571	Ggc/Cgc																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11123688	11123688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			604	34	410	1	ENST00000344626.4:c.2338G>A	p.Glu780Lys	p.E780K	ENST00000344626	NM_003072.3	780	Gag/Aag																																													NEWRECORD																																		
PIK3R2	5296	MSKCC	GRCh37	19	18273811	18273811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			501	146	458	1	ENST00000222254.8:c.1144C>T	p.His382Tyr	p.H382Y	ENST00000222254	NM_005027.3	382	Cac/Tac																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9546626	9546626	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			747	136	507	0	ENST00000353224.5:c.1396G>C	p.Ala466Pro	p.A466P	ENST00000353224	NM_177990.2	466	Gcc/Ccc																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47039669	47039669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	127	232	0	ENST00000329236.7:c.887G>T	p.Gly296Val	p.G296V	ENST00000329236	NM_001204466.1	296	gGc/gTc																																													NEWRECORD																																		
SH2D1A	4068	MSKCC	GRCh37	X	123480508	123480508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			252	108	174	0	ENST00000371139.4:c.16G>T	p.Val6Leu	p.V6L	ENST00000371139	NM_001114937.2	6	Gtg/Ttg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0001761-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	120	552	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0001761-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	137	562	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70332368	70332368	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001761-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			279	94	538	0	ENST00000373644.4:c.273T>A	p.Phe91Leu	p.F91L	ENST00000373644	NM_030625.2	91	ttT/ttA																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70120403	70120404	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001761-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			122	144	649	1	ENST00000245479.2:c.1406dup	p.Met469IlefsTer109	p.M469Ifs*109	ENST00000245479	NM_000346.3	469	atg/aTtg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001208-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	98	307	0	ENST00000263967.3:c.323G>T	p.Arg108Leu	p.R108L	ENST00000263967	NM_006218.2	108	cGt/cTt																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0001208-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			151	303	228	0	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																														NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106197275	106197276	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0001208-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			177	53	261	0	ENST00000380013.4:c.5609dup	p.Ile1871AsnfsTer4	p.I1871Nfs*4	ENST00000380013	NM_001127208.2	1870	tca/tCca																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	82	330	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	84	367	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	253	512	4	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39913252	39913253	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs797044647		P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	284	313	0	ENST00000378444.4:c.4862dup	p.Gly1622ArgfsTer7	p.G1622Rfs*7	ENST00000378444	NM_001123385.1	1621	cca/ccCa																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	140	238	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	112	187	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372389	55372389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	63	491	0	ENST00000297316.4:c.1079G>A	p.Arg360His	p.R360H	ENST00000297316	NM_022454.3	360	cGc/cAc																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	80	154	3	ENST00000307078.5:c.1214_1215delAG	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30729962	30729962	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs104893819		P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	146	228	0	ENST00000359013.4:c.1558C>T	p.Arg520Ter	p.R520*	ENST00000359013	NM_001024847.2	520	Cga/Tga																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56493620	56493621	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	214	420	1	ENST00000267101.3:c.2944_2945del		p.X982_splice	ENST00000267101	NM_001982.3	982																																														NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	211	467	0	ENST00000261937.6:c.89dupC	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105667	27105667	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	243	481	0	ENST00000324856.7:c.5278G>T	p.Glu1760Ter	p.E1760*	ENST00000324856	NM_006015.4	1760	Gag/Tag																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198281545	198281545	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	270	533	1	ENST00000335508.6:c.586C>T	p.Arg196Ter	p.R196*	ENST00000335508	NM_012433.2	196	Cga/Tga																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202141596	202141596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	216	442	0	ENST00000358485.4:c.884G>A	p.Cys295Tyr	p.C295Y	ENST00000358485	NM_001080125.1	295	tGt/tAt																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142231267	142231267	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	230	459	0	ENST00000350721.4:c.4687A>G	p.Thr1563Ala	p.T1563A	ENST00000350721	NM_001184.3	1563	Acc/Gcc																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131973914	131973914	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	176	256	0	ENST00000265335.6:c.3617A>G	p.Lys1206Arg	p.K1206R	ENST00000265335		1206	aAg/aGg																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149513202	149513202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	230	499	1	ENST00000261799.4:c.881C>T	p.Thr294Met	p.T294M	ENST00000261799	NM_002609.3	294	aCg/aTg																																													NEWRECORD																																		
FYN	2534	MSKCC	GRCh37	6	112029160	112029160	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1326	336	814	0	ENST00000368678.4:c.408T>G	p.Asn136Lys	p.N136K	ENST00000368678		136	aaT/aaG																																													NEWRECORD																																		
INHBA	3624	MSKCC	GRCh37	7	41729984	41729984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1889	617	1036	1	ENST00000242208.4:c.545C>T	p.Pro182Leu	p.P182L	ENST00000242208	NM_002192.2	182	cCg/cTg																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140494169	140494169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	216	582	0	ENST00000288602.6:c.1079G>A	p.Arg360Gln	p.R360Q	ENST00000288602	NM_004333.4	360	cGa/cAa																																													NEWRECORD																																		
RAD21	5885	MSKCC	GRCh37	8	117878836	117878836	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	271	714	0	ENST00000297338.2:c.133A>G	p.Ile45Val	p.I45V	ENST00000297338	NM_006265.2	45	Atc/Gtc																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145737842	145737842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	140	347	1	ENST00000428558.2:c.2988G>T	p.Met996Ile	p.M996I	ENST00000428558	NM_004260.3	996	atG/atT																																													NEWRECORD																																		
NTRK2	4915	MSKCC	GRCh37	9	87570285	87570285	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	61	326	1	ENST00000277120.3:c.2025G>T	p.Gln675His	p.Q675H	ENST00000277120		675	caG/caT																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98220318	98220318	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	198	291	2	ENST00000331920.6:c.3145A>G	p.Asn1049Asp	p.N1049D	ENST00000331920	NM_000264.3	1049	Aac/Gac																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63845643	63845643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	79	237	0	ENST00000279873.7:c.1382C>T	p.Pro461Leu	p.P461L	ENST00000279873	NM_032199.2	461	cCc/cTc																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925513	114925513	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1590	492	978	0	ENST00000543371.1:c.1591A>G	p.Met531Val	p.M531V	ENST00000543371	NM_001198531.1	531	Atg/Gtg																																													NEWRECORD																																		
YAP1	10413	MSKCC	GRCh37	11	102076624	102076624	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	94	193	0	ENST00000282441.5:c.803C>T	p.Ala268Val	p.A268V	ENST00000282441	NM_001130145.2	268	gCc/gTc																																													NEWRECORD																																		
RAD52	5893	MSKCC	GRCh37	12	1022610	1022610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	149	451	0	ENST00000358495.3:c.1204G>A	p.Glu402Lys	p.E402K	ENST00000358495	NM_134424.2	402	Gaa/Aaa																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49444555	49444555	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	97	228	0	ENST00000301067.7:c.2816T>A	p.Leu939His	p.L939H	ENST00000301067	NM_003482.3	939	cTc/cAc																																													NEWRECORD																																		
SMARCD1	6602	MSKCC	GRCh37	12	50480106	50480106	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	180	338	0	ENST00000394963.4:c.340C>T	p.Gln114Ter	p.Q114*	ENST00000394963	NM_003076.4	114	Cag/Tag																																													NEWRECORD																																		
SMARCD1	6602	MSKCC	GRCh37	12	50484373	50484373	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	187	326	0	ENST00000394963.4:c.1133G>T	p.Ser378Ile	p.S378I	ENST00000394963	NM_003076.4	378	aGt/aTt																																													NEWRECORD																																		
RAB35	11021	MSKCC	GRCh37	12	120536891	120536891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1608	428	859	3	ENST00000229340.5:c.295G>A	p.Val99Ile	p.V99I	ENST00000229340	NM_006861.6	99	Gtc/Atc																																													NEWRECORD																																		
HNF1A	6927	MSKCC	GRCh37	12	121435294	121435294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	42	288	0	ENST00000257555.6:c.1327G>T	p.Ala443Ser	p.A443S	ENST00000257555		443	Gca/Tca																																													NEWRECORD																																		
LATS2	26524	MSKCC	GRCh37	13	21563156	21563156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	206	367	0	ENST00000382592.4:c.763C>T	p.Arg255Trp	p.R255W	ENST00000382592	NM_014572.2	255	Cgg/Tgg																																													NEWRECORD																																		
NKX2-1	7080	MSKCC	GRCh37	14	36987067	36987067	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	158	312	0	ENST00000354822.5:c.622C>T	p.Arg208Ter	p.R208*	ENST00000354822	NM_001079668.2	208	Cga/Tga																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99456376	99456376	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	199	349	0	ENST00000268035.6:c.1693G>T	p.Gly565Cys	p.G565C	ENST00000268035	NM_000875.3	565	Ggc/Tgc																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3788672	3788672	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	185	384	0	ENST00000262367.5:c.4282C>T	p.Arg1428Cys	p.R1428C	ENST00000262367	NM_004380.2	1428	Cgt/Tgt																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72845477	72845477	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	231	567	0	ENST00000268489.5:c.3863C>T	p.Thr1288Met	p.T1288M	ENST00000268489	NM_006885.3	1288	aCg/aTg																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41244880	41244880	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	120	384	0	ENST00000357654.3:c.2668G>T	p.Gly890Trp	p.G890W	ENST00000357654	NM_007294.3	890	Ggg/Tgg																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56436128	56436128	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1134	373	621	0	ENST00000407977.2:c.1009C>T	p.Arg337Ter	p.R337*	ENST00000407977		337	Cga/Tga																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15353815	15353815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	183	462	1	ENST00000263377.2:c.3065C>T	p.Pro1022Leu	p.P1022L	ENST00000263377	NM_058243.2	1022	cCg/cTg																																													NEWRECORD																																		
ICOSLG	23308	MSKCC	GRCh37	21	45651171	45651171	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	255	467	1	ENST00000407780.3:c.854G>T	p.Ser285Ile	p.S285I	ENST00000407780	NM_001283052.1	285	aGc/aTc																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76764017	76764017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	60	389	1	ENST00000373344.5:c.7291G>A	p.Ala2431Thr	p.A2431T	ENST00000373344	NM_000489.3	2431	Gca/Aca																																													NEWRECORD																																		
SRSF2	6427	MSKCC	GRCh37	17	74732484	74732519	+	inframe_deletion	In_Frame_Del	DEL	GATCGGCTGCGAGACCTGGAACGACTCCGACTCCGG	GATCGGCTGCGAGACCTGGAACGACTCCGACTCCGG	-			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1437	258	745	0	ENST00000359995.5:c.390_425del	p.Ser132_Arg143del	p.S132_R143del	ENST00000359995	NM_001195427.1	130	tcCCGGAGTCGGAGTCGTTCCAGGTCTCGCAGCCGATCt/tct																																													NEWRECORD																																		
PMS1	5378	MSKCC	GRCh37	2	190728564	190728565	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	131	488	0	ENST00000441310.2:c.1958dup	p.Ile654AspfsTer21	p.I654Dfs*21	ENST00000441310	NM_000534.4	651	aga/agAa																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118369100	118369101	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	123	252	0	ENST00000534358.1:c.5822dup	p.Pro1942AlafsTer31	p.P1942Afs*31	ENST00000534358	NM_005933.3	1940	caa/cAaa																																													NEWRECORD																																		
RFWD2	64326	MSKCC	GRCh37	1	175957465	175957465	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	177	552	0	ENST00000367669.3:c.1931del	p.Asn644ThrfsTer3	p.N644Tfs*3	ENST00000367669	NM_022457.5	644	aAc/ac																																													NEWRECORD																																		
TCF3	6929	MSKCC	GRCh37	19	1622183	1622183	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1553	86	741	0	ENST00000344749.5:c.692del	p.Pro231ArgfsTer53	p.P231Rfs*53	ENST00000344749	NM_001136139.2	231	cCg/cg																																													NEWRECORD																																		
PIK3C3	5289	MSKCC	GRCh37	18	39617680	39617680	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	102	426	0	ENST00000262039.4:c.1869del	p.Phe623LeufsTer43	p.F623Lfs*43	ENST00000262039	NM_002647.2	622	Ttt/tt																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372092	55372093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	28	179	2	ENST00000297316.4:c.788dup	p.Glu264GlyfsTer101	p.E264Gfs*101	ENST00000297316	NM_022454.3	261	ggc/ggCc																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27057961	27057962	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	213	398	0	ENST00000324856.7:c.1669_1670del	p.Gln557ValfsTer65	p.Q557Vfs*65	ENST00000324856	NM_006015.4	557	CAg/g																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18446909	18446909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	48	341	0	ENST00000266497.5:c.994C>A	p.His332Asn	p.H332N	ENST00000266497		332	Cat/Aat																																													NEWRECORD																																		
FANCC	2176	MSKCC	GRCh37	9	98009792	98009792	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	36	286	1	ENST00000289081.3:c.172A>T	p.Asn58Tyr	p.N58Y	ENST00000289081	NM_000136.2	58	Aat/Tat																																													NEWRECORD																																		
MYOD1	4654	MSKCC	GRCh37	11	17743005	17743005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	30	247	0	ENST00000250003.3:c.913C>A	p.Pro305Thr	p.P305T	ENST00000250003	NM_002478.4	305	Ccg/Acg																																													NEWRECORD																																		
SRSF2	6427	MSKCC	GRCh37	17	74732413	74732413	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1447	106	609	0	ENST00000359995.5:c.496G>T	p.Ala166Ser	p.A166S	ENST00000359995	NM_001195427.1	166	Gca/Tca																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9546581	9546581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	38	296	0	ENST00000353224.5:c.1441G>T	p.Asp481Tyr	p.D481Y	ENST00000353224	NM_177990.2	481	Gac/Tac																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40828000	40828000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	22	176	0	ENST00000373198.4:c.2428C>A	p.Gln810Lys	p.Q810K	ENST00000373198	NM_133170.3	810	Cag/Aag																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11114063	11114063	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	53	427	1	ENST00000344626.4:c.1992del	p.Glu665ArgfsTer109	p.E665Rfs*109	ENST00000344626	NM_003072.3	664	gAa/ga																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578473	7578474	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	74	221	1	ENST00000269305.4:c.456_457insT	p.Pro153SerfsTer28	p.P153Sfs*28	ENST00000269305	NM_001126112.2	152	-/T																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	81	353	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106592	27106592	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	136	640	0	ENST00000324856.7:c.6203C>G	p.Ser2068Trp	p.S2068W	ENST00000324856	NM_006015.4	2068	tCg/tGg																																													NEWRECORD																																		
H3F3C	440093	MSKCC	GRCh37	12	31944953	31944953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	43	513	1	ENST00000340398.3:c.148G>A	p.Glu50Lys	p.E50K	ENST00000340398	NM_001013699.2	50	Gag/Aag																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56161757	56161758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATACATTGTCATCATCTAGTA			P-0014434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	120	576	0	ENST00000399503.3:c.1256_1277dup	p.Ser427TyrfsTer6	p.S427Yfs*6	ENST00000399503	NM_005921.1	418	-/CATACATTGTCATCATCTAGTA																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56189395	56189396	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	147	532	0	ENST00000399503.3:c.4430dup	p.Leu1477PhefsTer46	p.L1477Ffs*46	ENST00000399503	NM_005921.1	1476	cat/caTt																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	414	383	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66765149	66765151	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-	rs764402637		P-0007282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	46	324	0	ENST00000374690.3:c.170_172del	p.Leu57del	p.L57del	ENST00000374690	NM_000044.3	54	tTGCtg/ttg																																													NEWRECORD																																		
TNFAIP3	7128	MSKCC	GRCh37	6	138199958	138199958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	57	195	4	ENST00000237289.4:c.1376C>T	p.Ser459Leu	p.S459L	ENST00000237289	NM_001270507.1	459	tCg/tTg																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151860143	151860143	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	268	427	0	ENST00000262189.6:c.10519C>T	p.Arg3507Ter	p.R3507*	ENST00000262189	NM_170606.2	3507	Cga/Tga																																													NEWRECORD																																		
FGFR4	2264	MSKCC	GRCh37	5	176522551	176522551	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774571806		P-0007282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	405	424	0	ENST00000292408.4:c.1648G>A	p.Val550Met	p.V550M	ENST00000292408	NM_213647.1	550	Gtg/Atg																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11184589	11184589	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	146	507	0	ENST00000361445.4:c.6628G>C	p.Ala2210Pro	p.A2210P	ENST00000361445	NM_004958.3	2210	Gcc/Ccc																																													NEWRECORD																																		
RARA	5914	MSKCC	GRCh37	17	38508610	38508610	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1391	152	585	0	ENST00000254066.5:c.658C>G	p.Leu220Val	p.L220V	ENST00000254066	NM_000964.3	220	Ctg/Gtg																																													NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105243057	105243058	+	inframe_insertion	In_Frame_Ins	INS	-	-	GATGATGAAGGTGTTGGGCCGGGGCCGCTCCGT			P-0007282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1608	617	604	0	ENST00000349310.3:c.193_225dup	p.Thr65_Ile75dup	p.T65_I75dup	ENST00000349310	NM_001014432.1	65	-/ACGGAGCGGCCCCGGCCCAACACCTTCATCATC																																													NEWRECORD																																		
LATS2	26524	MSKCC	GRCh37	13	21555684	21555685	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0007282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	41	627	1	ENST00000382592.4:c.2585_2586delinsAA	p.Arg862Gln	p.R862Q	ENST00000382592	NM_014572.2	862	cGG/cAA																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	226	624	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49928036	49928036	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199869962		P-0014092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	429	1088	1	ENST00000296474.3:c.3692G>A	p.Arg1231His	p.R1231H	ENST00000296474	NM_002447.2	1231	cGc/cAc																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151877860	151877878	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGTTGGCACAGGTCCAG	GAAGTTGGCACAGGTCCAG	-			P-0014092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	187	642	0	ENST00000262189.6:c.7067_7085del	p.Pro2356GlnfsTer3	p.P2356Qfs*3	ENST00000262189	NM_170606.2	2356	cCTGGACCTGTGCCAACTTCa/ca																																													NEWRECORD																																		
MEF2B	100271849	MSKCC	GRCh37	19	19257899	19257899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	235	853	3	ENST00000162023.5:c.487G>A	p.Ala163Thr	p.A163T	ENST00000162023		163	Gcc/Acc																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187540233	187540233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	144	949	0	ENST00000441802.2:c.7507G>A	p.Glu2503Lys	p.E2503K	ENST00000441802	NM_005245.3	2503	Gaa/Aaa																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56160564	56160565	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0014092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	172	465	0	ENST00000399503.3:c.838_839del	p.Gln280GlufsTer20	p.Q280Efs*20	ENST00000399503	NM_005921.1	280	CAg/g																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56177840	56177841	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	234	573	0	ENST00000399503.3:c.2815dup	p.Ser939PhefsTer2	p.S939Ffs*2	ENST00000399503	NM_005921.1	938	cct/ccTt																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53225929	53225929	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	389	966	1	ENST00000375401.3:c.2920C>T	p.Gln974Ter	p.Q974*	ENST00000375401	NM_004187.3	974	Cag/Tag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	39	301	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0005211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	34	316	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																													NEWRECORD																																		
NEGR1	257194	MSKCC	GRCh37	1	72058652	72058652	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0005211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	28	525	0	ENST00000357731.5:c.789-1G>C		p.X263_splice	ENST00000357731	NM_173808.2	263																																														NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	56	125	0				ENST00000310581	NM_198253.2																																															NEWRECORD																																		
TMEM127	55654	MSKCC	GRCh37	2	96919598	96919598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	106	704	1	ENST00000258439.3:c.665C>T	p.Ala222Val	p.A222V	ENST00000258439	NM_001193304.2	222	gCg/gTg																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249018	55249019	+	inframe_insertion	In_Frame_Ins	INS	-	-	CACCAT			P-0013705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	146	569	0	ENST00000275493.2:c.2319_2320insCATCAC	p.His773_Val774insHisHis	p.H773_V774insHH	ENST00000275493	NM_005228.3	772	-/CACCAT																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133730371	133730371	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	92	552	0	ENST00000318560.5:c.437A>G	p.Asn146Ser	p.N146S	ENST00000318560	NM_005157.4	146	aAt/aGt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0014823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	200	359	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577085	7577086	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	275	574	0	ENST00000269305.4:c.852dup	p.Glu285ArgfsTer21	p.E285Rfs*21	ENST00000269305	NM_001126112.2	284	-/A																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0012911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	47	257	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0012911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1383	141	724	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	92	523	0	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29917737	29917737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	71	528	0	ENST00000389048.3:c.931C>A	p.Arg311Ser	p.R311S	ENST00000389048	NM_004304.4	311	Cgt/Agt																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115706	8115707	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGAC			P-0012911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	81	434	0	ENST00000346208.3:c.1054_1058dup	p.Leu354AspfsTer3	p.L354Dfs*3	ENST00000346208		351	aac/aaCAGACc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	120	464	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	176	447	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	131	363	1	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	86	401	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	95	299	0	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																													NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	109	418	3	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																													NEWRECORD																																		
HIST1H3J	8356	MSKCC	GRCh37	6	27858492	27858492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1318	247	957	0	ENST00000359303.2:c.79C>T	p.Arg27Cys	p.R27C	ENST00000359303	NM_003535.2	27	Cgc/Tgc																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72831026	72831026	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs61737017		P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1256	237	886	1	ENST00000268489.5:c.5555A>C	p.Gln1852Pro	p.Q1852P	ENST00000268489	NM_006885.3	1852	cAg/cCg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs786201057		P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	111	366	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																													NEWRECORD																																		
FGFR4	2264	MSKCC	GRCh37	5	176522720	176522720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	119	399	1	ENST00000292408.4:c.1817G>A	p.Arg606Gln	p.R606Q	ENST00000292408	NM_213647.1	606	cGg/cAg																																													NEWRECORD																																		
HIST1H3C	8352	MSKCC	GRCh37	6	26045726	26045726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1561	268	984	4	ENST00000540144.1:c.88G>A	p.Ala30Thr	p.A30T	ENST00000540144	NM_003531.2	30	Gct/Act																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30671451	30671451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1270	186	604	0	ENST00000376406.3:c.5509G>A	p.Val1837Met	p.V1837M	ENST00000376406	NM_014641.2	1837	Gtg/Atg																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106513371	106513371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	115	479	2	ENST00000359195.3:c.2275G>A	p.Val759Ile	p.V759I	ENST00000359195	NM_002649.2	759	Gtc/Atc																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151917715	151917715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	29	157	0	ENST00000262189.6:c.3605C>T	p.Pro1202Leu	p.P1202L	ENST00000262189	NM_170606.2	1202	cCa/cTa																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145738708	145738708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	56	437	0	ENST00000428558.2:c.2356G>A	p.Val786Met	p.V786M	ENST00000428558	NM_004260.3	786	Gtg/Atg																																													NEWRECORD																																		
NTRK2	4915	MSKCC	GRCh37	9	87285694	87285694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	98	494	0	ENST00000277120.3:c.31G>A	p.Ala11Thr	p.A11T	ENST00000277120		11	Gcc/Acc																																													NEWRECORD																																		
NTRK2	4915	MSKCC	GRCh37	9	87636210	87636210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	123	459	0	ENST00000277120.3:c.2375G>A	p.Arg792His	p.R792H	ENST00000277120		792	cGc/cAc																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139401384	139401384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	92	361	1	ENST00000277541.6:c.3685G>A	p.Val1229Ile	p.V1229I	ENST00000277541	NM_017617.3	1229	Gtt/Att																																													NEWRECORD																																		
HRAS	3265	MSKCC	GRCh37	11	532701	532701	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151229168		P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	204	687	3	ENST00000311189.7:c.505C>T	p.Arg169Trp	p.R169W	ENST00000311189		169	Cgg/Tgg																																													NEWRECORD																																		
BIRC3	330	MSKCC	GRCh37	11	102195752	102195752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1351	263	909	0	ENST00000263464.3:c.512C>T	p.Ala171Val	p.A171V	ENST00000263464	NM_001165.4	171	gCc/gTc																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133237692	133237692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	141	611	0	ENST00000320574.5:c.2923C>T	p.Arg975Cys	p.R975C	ENST00000320574	NM_006231.2	975	Cgc/Tgc																																													NEWRECORD																																		
FOXO1	2308	MSKCC	GRCh37	13	41134933	41134933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1569	248	996	0	ENST00000379561.5:c.695G>A	p.Gly232Glu	p.G232E	ENST00000379561	NM_002015.3	232	gGa/gAa																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7122768	7122768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	57	506	1	ENST00000302850.5:c.3386C>T	p.Pro1129Leu	p.P1129L	ENST00000302850	NM_000208.2	1129	cCt/cTt																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15302277	15302277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	176	584	0	ENST00000263388.2:c.994C>T	p.Arg332Cys	p.R332C	ENST00000263388	NM_000435.2	332	Cgc/Tgc																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41725374	41725374	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	467	594	0	ENST00000301178.4:c.81delC	p.Arg28GlyfsTer70	p.R28Gfs*70	ENST00000301178	NM_021913.4	26	gCc/gc																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103524567	103524568	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	134	449	0	ENST00000355739.4:c.2705dup	p.Asn902LysfsTer7	p.N902Kfs*7	ENST00000355739	NM_000123.3	900	caa/cAaa																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135797261	135797261	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1180	80	496	2	ENST00000298552.3:c.608delT	p.Leu203CysfsTer7	p.L203Cfs*7	ENST00000298552	NM_001162426.1	203	tTg/tg																																													NEWRECORD																																		
REL	5966	MSKCC	GRCh37	2	61147770	61147771	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	93	351	0	ENST00000295025.8:c.1086dup	p.Glu363ArgfsTer8	p.E363Rfs*8	ENST00000295025	NM_002908.2	360	-/A																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47038526	47038526	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	703	612	2	ENST00000329236.7:c.457C>T	p.Arg153Ter	p.R153*	ENST00000329236	NM_001204466.1	153	Cga/Tga																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41100980	41100980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	812	329	0	ENST00000373198.4:c.1376G>A	p.Arg459Gln	p.R459Q	ENST00000373198	NM_133170.3	459	cGg/cAg																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123215327	123215327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1068	151	541	0	ENST00000218089.9:c.2873C>A	p.Thr958Asn	p.T958N	ENST00000218089	NM_001042749.1	958	aCt/aAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578532	7578533	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0010134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	291	374	0	ENST00000269305.4:c.396_397dup	p.Met133ArgfsTer38	p.M133Rfs*38	ENST00000269305	NM_001126112.2	133	atg/aGAtg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001742-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			51	12	172	0	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0001742-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			54	17	375	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000624-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			300	173	430	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000624-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	8	301	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139405171	139405171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000624-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			67	21	498	0	ENST00000277541.6:c.2674C>T	p.Arg892Cys	p.R892C	ENST00000277541	NM_017617.3	892	Cgc/Tgc																																													NEWRECORD																																		
MAX	4149	MSKCC	GRCh37	14	65544703	65544703	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000624-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			69	63	559	1	ENST00000358664.4:c.223C>T	p.Arg75Ter	p.R75*	ENST00000358664	NM_002382.4	75	Cga/Tga																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0000624-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			120	73	242	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0006618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	136	301	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0006618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	240	318	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																													NEWRECORD																																		
PRDM1	639	MSKCC	GRCh37	6	106553677	106553677	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	167	283	0	ENST00000369096.4:c.1642A>C	p.Asn548His	p.N548H	ENST00000369096	NM_001198.3	548	Aat/Cat																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41573492	41573492	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	205	336	0	ENST00000263253.7:c.5777T>G	p.Val1926Gly	p.V1926G	ENST00000263253	NM_001429.3	1926	gTg/gGg																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44949068	44949068	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	219	447	0	ENST00000377967.4:c.3629T>G	p.Phe1210Cys	p.F1210C	ENST00000377967	NM_021140.2	1210	tTt/tGt																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971145	21971146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	48	81	0	ENST00000304494.5:c.212dup	p.Asn71LysfsTer49	p.N71Kfs*49	ENST00000304494	NM_000077.4	71	aac/aaAc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0006668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	773	382	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142285073	142285073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	97	412	0	ENST00000350721.4:c.182C>T	p.Ser61Phe	p.S61F	ENST00000350721	NM_001184.3	61	tCt/tTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0006668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	204	321	0	ENST00000269305.4:c.376T>G	p.Tyr126Asp	p.Y126D	ENST00000269305	NM_001126112.2	126	Tac/Gac																																													NEWRECORD																																		
FGFR1	2260	MSKCC	GRCh37	8	38285913	38285914	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCA			P-0006668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1227	77	464	0	ENST00000425967.3:c.495_497dupTGA	p.Asp166dup	p.D166dup	ENST00000425967	NM_001174067.1	166	gac/gaTGAc																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	266	413	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
VEGFA	7422	MSKCC	GRCh37	6	43749769	43749769	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1455	346	796	0	ENST00000523873.1:c.622A>C	p.Asn208His	p.N208H	ENST00000523873		208	Aac/Cac																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117665317	117665317	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	192	538	0	ENST00000368508.3:c.4430G>A	p.Trp1477Ter	p.W1477*	ENST00000368508	NM_002944.2	1477	tGg/tAg																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118367013	118367013	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	182	584	0	ENST00000534358.1:c.5595C>G	p.Asn1865Lys	p.N1865K	ENST00000534358	NM_005933.3	1865	aaC/aaG																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37682254	37682254	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	422	523	2	ENST00000447079.4:c.3445C>T	p.Gln1149Ter	p.Q1149*	ENST00000447079	NM_015083.1	1149	Cag/Tag																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56448310	56448310	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	313	374	0	ENST00000407977.2:c.337C>T	p.Arg113Ter	p.R113*	ENST00000407977		113	Cga/Tga																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577514	7577515	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGA			P-0009561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	321	490	0	ENST00000269305.4:c.764_766dupTCA	p.Ile255dup	p.I255dup	ENST00000269305	NM_001126112.2	255	aca/aTCAca																																													NEWRECORD																																		
DCUN1D1	54165	MSKCC	GRCh37	3	182683426	182683426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	53	435	0	ENST00000292782.4:c.119C>T	p.Ala40Val	p.A40V	ENST00000292782	NM_020640.2	40	gCa/gTa																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118343180	118343180	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	65	632	0	ENST00000534358.1:c.1306C>G	p.Pro436Ala	p.P436A	ENST00000534358	NM_005933.3	436	Cct/Gct																																													NEWRECORD																																		
JUN	3725	MSKCC	GRCh37	1	59248284	59248285	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	20	94	0	ENST00000371222.2:c.458dup	p.Ser154GlnfsTer156	p.S154Qfs*156	ENST00000371222	NM_002228.3	153	ggc/ggGc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000739-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	540	299	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212543850	212543850	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000739-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			408	52	184	0	ENST00000342788.4:c.1549C>G	p.Pro517Ala	p.P517A	ENST00000342788	NM_005235.2	517	Cca/Gca																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41275738	41275738	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000739-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	116	221	0	ENST00000349496.5:c.1633C>A	p.Gln545Lys	p.Q545K	ENST00000349496	NM_001904.3	545	Cag/Aag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112157650	112157650	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000739-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	146	241	0	ENST00000257430.4:c.1370C>G	p.Ser457Ter	p.S457*	ENST00000257430	NM_000038.5	457	tCa/tGa																																													NEWRECORD																																		
SMARCD1	6602	MSKCC	GRCh37	12	50480426	50480426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000739-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	81	172	0	ENST00000394963.4:c.388G>A	p.Asp130Asn	p.D130N	ENST00000394963	NM_003076.4	130	Gac/Aac																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11094984	11094984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000739-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	31	435	0	ENST00000344626.4:c.157G>A	p.Gly53Arg	p.G53R	ENST00000344626	NM_003072.3	53	Gga/Aga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175191	112175192	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000739-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			103	23	117	0	ENST00000257430.4:c.3901dup	p.Thr1301AsnfsTer14	p.T1301Nfs*14	ENST00000257430	NM_000038.5	1300	-/A																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	230	379	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	119	262	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115112641	115112641	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	165	238	0	ENST00000257566.3:c.1100-1G>A		p.X367_splice	ENST00000257566	NM_016569.3	367																																														NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99434825	99434825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	76	170	0	ENST00000268035.6:c.912G>A	p.Met304Ile	p.M304I	ENST00000268035	NM_000875.3	304	atG/atA																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115112449	115112450	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	237	203	0	ENST00000257566.3:c.1290dup	p.Ala431SerfsTer8	p.A431Sfs*8	ENST00000257566	NM_016569.3	430	-/A																																													NEWRECORD																																		
JUN	3725	MSKCC	GRCh37	1	59248589	59248590	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCAC			P-0004314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	144	378	0	ENST00000371222.2:c.153_154insGTGGG	p.His52ValfsTer30	p.H52Vfs*30	ENST00000371222	NM_002228.3	51	-/GTGGG																																													NEWRECORD																																		
PLK2	10769	MSKCC	GRCh37	5	57750460	57750461	+	stop_gained	Nonsense_Mutation	DNP	TT	TT	AA			P-0004314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	230	462	0	ENST00000274289.3:c.2007_2008inv	p.Leu669_Lys670delinsPheTer	p.L669_K670delinsF*	ENST00000274289	NM_006622.3	669	ttAAaa/ttTTaa																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	84	299	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	46	246	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108154953	108154953	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0009863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	17	137	0	ENST00000278616.4:c.3747-1G>T		p.X1249_splice	ENST00000278616	NM_000051.3	1249																																														NEWRECORD																																		
PGR	5241	MSKCC	GRCh37	11	100999758	100999758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2152	124	563	3	ENST00000325455.5:c.44C>T	p.Ala15Val	p.A15V	ENST00000325455	NM_001202474.3	15	gCg/gTg																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78938120	78938120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1209	190	371	1	ENST00000306801.3:c.3998G>A	p.Arg1333His	p.R1333H	ENST00000306801	NM_020761.2	1333	cGt/cAt																																													NEWRECORD																																		
NF2	4771	MSKCC	GRCh37	22	30074311	30074311	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0009863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	30	183	0	ENST00000338641.4:c.1573A>T	p.Lys525Ter	p.K525*	ENST00000338641	NM_000268.3	525	Aaa/Taa																																													NEWRECORD																																		
CDKN1B	1027	MSKCC	GRCh37	12	12871059	12871060	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAGGTGCCTGC			P-0009863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	77	183	0	ENST00000228872.4:c.295_305dup	p.Gln104ArgfsTer19	p.Q104Rfs*19	ENST00000228872	NM_004064.3	96	aaa/aAAGGTGCCTGCaa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577061	7577062	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	169	417	0	ENST00000269305.4:c.876dup	p.Gly293ArgfsTer13	p.G293Rfs*13	ENST00000269305	NM_001126112.2	292	-/A																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0006139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1144	318	442	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																													NEWRECORD																																		
MPL	4352	MSKCC	GRCh37	1	43812583	43812583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	74	473	0	ENST00000372470.3:c.1286G>A	p.Gly429Glu	p.G429E	ENST00000372470	NM_005373.2	429	gGa/gAa																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133226406	133226406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	97	437	0	ENST00000320574.5:c.3652G>T	p.Val1218Leu	p.V1218L	ENST00000320574	NM_006231.2	1218	Gta/Tta																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7152935	7152935	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	45	306	0	ENST00000302850.5:c.2033T>G	p.Leu678Arg	p.L678R	ENST00000302850	NM_000208.2	678	cTg/cGg																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41306700	41306700	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	148	429	0	ENST00000373198.4:c.959T>G	p.Ile320Ser	p.I320S	ENST00000373198	NM_133170.3	320	aTc/aGc																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47039658	47039659	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	246	477	0	ENST00000329236.7:c.877dup	p.Thr293AsnfsTer10	p.T293Nfs*10	ENST00000329236	NM_001204466.1	292	-/A																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	49	347	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115972	8115973	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	33	261	0	ENST00000346208.3:c.1320dup	p.Ala441ArgfsTer66	p.A441Rfs*66	ENST00000346208		440	acc/aCcc																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106180835	106180835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	94	586	0	ENST00000380013.4:c.3863G>T	p.Gly1288Val	p.G1288V	ENST00000380013	NM_001127208.2	1288	gGt/gTt																																													NEWRECORD																																		
RAB35	11021	MSKCC	GRCh37	12	120554444	120554444	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	42	295	0	ENST00000229340.5:c.11A>G	p.Asp4Gly	p.D4G	ENST00000229340	NM_006861.6	4	gAc/gGc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	143	521	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66197710	66197710	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs147053536		P-0013338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	52	499	0	ENST00000273854.3:c.2989G>T	p.Val997Leu	p.V997L	ENST00000273854	NM_004439.5	997	Gtg/Ttg																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47045533	47045533	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0013338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	63	552	0	ENST00000329236.7:c.2266A>T	p.Lys756Ter	p.K756*	ENST00000329236	NM_001204466.1	756	Aag/Tag																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55371984	55371985	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0013338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	199	258	0	ENST00000297316.4:c.676_677del	p.Pro226AlafsTer138	p.P226Afs*138	ENST00000297316	NM_022454.3	225	tCC/t																																													NEWRECORD																																		
XPO1	7514	MSKCC	GRCh37	2	61712946	61712947	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	71	761	0	ENST00000401558.2:c.2464dup	p.Ile822AsnfsTer3	p.I822Nfs*3	ENST00000401558	NM_003400.3	822	ata/aAta																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108202262	108202271	+	frameshift_variant	Frame_Shift_Del	DEL	GATTTCATGA	GATTTCATGA	-			P-0013338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	106	427	0	ENST00000278616.4:c.7607_7616del	p.Gly2536GlufsTer6	p.G2536Efs*6	ENST00000278616	NM_000051.3	2536	gGATTTCATGAa/ga																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88576132	88576133	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0013338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	67	624	1	ENST00000360948.2:c.1540_1541delinsAA	p.Pro514Asn	p.P514N	ENST00000360948	NM_001012338.2	514	CCc/AAc																																													NEWRECORD																																		
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0006447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	144	392	1	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68849453	68849454	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0006447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	163	455	0	ENST00000261769.5:c.1358_1359del	p.His453ArgfsTer10	p.H453Rfs*10	ENST00000261769	NM_004360.3	452	ctACac/ctac																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0014219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	295	662	0	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																													NEWRECORD																																		
STK40	83931	MSKCC	GRCh37	1	36820862	36820862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	63	624	0	ENST00000373129.3:c.515G>A	p.Arg172Lys	p.R172K	ENST00000373129	NM_032017.1	172	aGg/aAg																																													NEWRECORD																																		
NUF2	83540	MSKCC	GRCh37	1	163310151	163310154	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAGA	TAGA	-			P-0014219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	69	458	0	ENST00000271452.3:c.607_610del		p.X203_splice	ENST00000271452	NM_145697.2	203																																														NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212295773	212295773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1299031105		P-0014913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	376	536	0	ENST00000342788.4:c.2540G>A	p.Arg847His	p.R847H	ENST00000342788	NM_005235.2	847	cGt/cAt																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1265	472	689	0	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023211	27023227	+	frameshift_variant	Frame_Shift_Del	DEL	ACGCGGGCCCTAGGCCC	ACGCGGGCCCTAGGCCC	CGCGGGCCTA			P-0014913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	170	282	2	ENST00000324856.7:c.317_333delinsCGCGGGCCTA	p.Asn106ThrfsTer4	p.N106Tfs*4	ENST00000324856	NM_006015.4	106	aACGCGGGCCCTAGGCCC/aCGCGGGCCTA																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49434384	49434384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	157	640	0	ENST00000301067.7:c.7169C>T	p.Pro2390Leu	p.P2390L	ENST00000301067	NM_003482.3	2390	cCg/cTg																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70120148	70120148	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	162	227	0	ENST00000245479.2:c.1150A>G	p.Thr384Ala	p.T384A	ENST00000245479	NM_000346.3	384	Acg/Gcg																																													NEWRECORD																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52693373	52693373	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	273	615	0	ENST00000322088.6:c.24C>G	p.Asp8Glu	p.D8E	ENST00000322088	NM_014225.5	8	gaC/gaG																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	92	298	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	51	211	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																													NEWRECORD																																		
AKT3	10000	MSKCC	GRCh37	1	243668559	243668559	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	57	324	0	ENST00000263826.5:c.1432C>T	p.Arg478Ter	p.R478*	ENST00000263826	NM_005465.4	478	Cga/Tga																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151880169	151880169	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	98	436	0	ENST00000262189.6:c.5155C>T	p.Gln1719Ter	p.Q1719*	ENST00000262189	NM_170606.2	1719	Cag/Tag																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48586246	48586247	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	74	302	0	ENST00000342988.3:c.917dup	p.Asn306LysfsTer2	p.N306Kfs*2	ENST00000342988	NM_005359.5	305	-/A																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49431257	49431267	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCTGGGCAG	GGCCTGGGCAG	-			P-0007898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	38	191	0	ENST00000301067.7:c.9872_9882delCTGCCCAGGCC	p.Pro3291HisfsTer6	p.P3291Hfs*6	ENST00000301067	NM_003482.3	3291	cCTGCCCAGGCC/c																																													NEWRECORD																																		
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913233		P-0013223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	272	809	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49433650	49433650	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	138	725	0	ENST00000301067.7:c.7903C>T	p.Arg2635Ter	p.R2635*	ENST00000301067	NM_003482.3	2635	Cga/Tga																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42041395	42041396	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1191	462	1303	0	ENST00000219905.7:c.5591dup	p.Met1864IlefsTer29	p.M1864Ifs*29	ENST00000219905	NM_001164273.1	1864	atg/aTtg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	68	323	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																													NEWRECORD																																		
MAX	4149	MSKCC	GRCh37	14	65544640	65544640	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	71	414	0	ENST00000358664.4:c.286G>T	p.Glu96Ter	p.E96*	ENST00000358664	NM_002382.4	96	Gag/Tag																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587777894		P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	69	492	1	ENST00000361445.4:c.6644C>A	p.Ser2215Tyr	p.S2215Y	ENST00000361445	NM_004958.3	2215	tCt/tAt																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156845987	156845987	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	33	393	0	ENST00000524377.1:c.1617G>C	p.Met539Ile	p.M539I	ENST00000524377	NM_002529.3	539	atG/atC																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112170652	112170652	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	43	397	0	ENST00000257430.4:c.1748C>G	p.Ser583Ter	p.S583*	ENST00000257430	NM_000038.5	583	tCa/tGa																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	94120241	94120241	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	86	719	0	ENST00000369303.4:c.810G>C	p.Gln270His	p.Q270H	ENST00000369303	NM_004440.3	270	caG/caC																																													NEWRECORD																																		
LMO1	4004	MSKCC	GRCh37	11	8252049	8252049	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	47	303	0	ENST00000335790.3:c.28G>T	p.Val10Leu	p.V10L	ENST00000335790	NM_002315.2	10	Gtg/Ttg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7573009	7573009	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	76	446	0	ENST00000269305.4:c.1101-1G>A		p.X367_splice	ENST00000269305	NM_001126112.2	367																																														NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44969485	44969485	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	48	244	0	ENST00000377967.4:c.4167A>T	p.Gln1389His	p.Q1389H	ENST00000377967	NM_021140.2	1389	caA/caT																																													NEWRECORD																																		
IFNGR1	3459	MSKCC	GRCh37	6	137519590	137519590	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	44	515	0	ENST00000367739.4:c.1048del	p.Ser350LeufsTer3	p.S350Lfs*3	ENST00000367739	NM_000416.2	350	Tct/ct																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11129694	11129695	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	76	407	0	ENST00000344626.4:c.2501dup	p.Tyr834Ter	p.Y834*	ENST00000344626	NM_003072.3	834	tac/tAac																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974817	21974818	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGCTCCATG			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	22	116	0	ENST00000304494.5:c.-1_9dup	p.Ala4HisfsTer14	p.A4Hfs*14	ENST00000304494	NM_000077.4	3	-/CATGGAGCCG																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55133878	55133880	+	missense_variant	Missense_Mutation	ONP	CCA	CCA	ACC			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	53	391	0	ENST00000257290.5:c.1091_1093delinsACC	p.Thr364_Thr365delinsAsnPro	p.T364_T365delinsNP	ENST00000257290	NM_006206.4	364	aCCAct/aACCct																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	66	344	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	42	359	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	76	346	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	118	534	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	45	413	1	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																													NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	47	407	0	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	42	380	2	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																													NEWRECORD																																		
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	96	385	3	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	92	661	4	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																													NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215646085	215646085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	33	392	0	ENST00000260947.4:c.513del	p.Asp172MetfsTer40	p.D172Mfs*40	ENST00000260947	NM_000465.2	171	aaA/aa																																													NEWRECORD																																		
NCOA3	8202	MSKCC	GRCh37	20	46279861	46279866	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	16	320	0	ENST00000371998.3:c.3810_3815delACAGCA	p.Gln1275_Gln1276del	p.Q1275_Q1276del	ENST00000371998		1263	CAGCAA/-																																													NEWRECORD																																		
MCL1	4170	MSKCC	GRCh37	1	150551677	150551679	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	72	204	0	ENST00000369026.2:c.328_330del	p.Glu110del	p.E110del	ENST00000369026	NM_021960.4	110	GAG/-																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	64	386	3	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37884218	37884218	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	98	430	0	ENST00000269571.5:c.3694delG	p.Ala1232LeufsTer70	p.A1232Lfs*70	ENST00000269571		1230	cGg/cg																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	94120326	94120326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	58	610	2	ENST00000369303.4:c.725C>T	p.Ala242Val	p.A242V	ENST00000369303	NM_004440.3	242	gCg/gTg																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771831816		P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	54	308	1	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63850704	63850705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	50	390	3	ENST00000279873.7:c.1489dup	p.Ile497AsnfsTer31	p.I497Nfs*31	ENST00000279873	NM_032199.2	494	-/A																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411071	63411071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	48	272	0	ENST00000330258.3:c.2096G>A	p.Arg699His	p.R699H	ENST00000330258	NM_152424.3	699	cGt/cAt																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67671654	67671655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	61	360	0	ENST00000264010.4:c.2070dup	p.Glu691ArgfsTer5	p.E691Rfs*5	ENST00000264010	NM_006565.3	688	gta/gtAa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112164664	112164664	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	23	188	0	ENST00000257430.4:c.1742delA	p.Lys581ArgfsTer9	p.K581Rfs*9	ENST00000257430	NM_000038.5	580	Aaa/aa																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120480538	120480538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	56	453	0	ENST00000256646.2:c.3279G>T	p.Trp1093Cys	p.W1093C	ENST00000256646	NM_024408.3	1093	tgG/tgT																																													NEWRECORD																																		
RIT1	6016	MSKCC	GRCh37	1	155870264	155870264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	122	619	0	ENST00000368323.3:c.575C>T	p.Ala192Val	p.A192V	ENST00000368323	NM_006912.5	192	gCc/gTc																																													NEWRECORD																																		
CXCR4	7852	MSKCC	GRCh37	2	136872663	136872663	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	142	748	0	ENST00000241393.3:c.835A>G	p.Thr279Ala	p.T279A	ENST00000241393	NM_003467.2	279	Act/Gct																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202151314	202151314	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	41	443	0	ENST00000358485.4:c.1614T>A	p.Asp538Glu	p.D538E	ENST00000358485	NM_001080125.1	538	gaT/gaA																																													NEWRECORD																																		
MLH1	4292	MSKCC	GRCh37	3	37035151	37035151	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	97	188	0	ENST00000231790.2:c.113A>G	p.Asn38Ser	p.N38S	ENST00000231790	NM_000249.3	38	aAc/aGc																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266190	41266190	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	36	381	0	ENST00000349496.5:c.187C>A	p.Leu63Met	p.L63M	ENST00000349496	NM_001904.3	63	Ctg/Atg																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143094943	143094943	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	36	375	0	ENST00000262992.4:c.1201T>C	p.Tyr401His	p.Y401H	ENST00000262992	NM_001101669.1	401	Tac/Cac																																													NEWRECORD																																		
RAD21	5885	MSKCC	GRCh37	8	117866579	117866579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	74	768	0	ENST00000297338.2:c.1066C>T	p.Pro356Ser	p.P356S	ENST00000297338	NM_006265.2	356	Ccc/Tcc																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8319965	8319965	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs141403124		P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	23	292	0	ENST00000356435.5:c.5536G>A	p.Ala1846Thr	p.A1846T	ENST00000356435		1846	Gcg/Acg																																													NEWRECORD																																		
LATS2	26524	MSKCC	GRCh37	13	21549230	21549230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113238499		P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	87	703	0	ENST00000382592.4:c.3046G>A	p.Glu1016Lys	p.E1016K	ENST00000382592	NM_014572.2	1016	Gaa/Aaa																																													NEWRECORD																																		
NUP93	9688	MSKCC	GRCh37	16	56865792	56865792	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	83	732	1	ENST00000308159.5:c.1124A>G	p.Tyr375Cys	p.Y375C	ENST00000308159	NM_014669.4	375	tAc/tGc																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17127424	17127424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	47	357	1	ENST00000285071.4:c.430G>A	p.Gly144Arg	p.G144R	ENST00000285071	NM_144997.5	144	Gga/Aga																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56436098	56436098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	134	521	1	ENST00000407977.2:c.1039G>A	p.Gly347Ser	p.G347S	ENST00000407977		347	Ggc/Agc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5210796	5210796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	42	389	0	ENST00000357368.4:c.5255C>T	p.Ala1752Val	p.A1752V	ENST00000357368	NM_002850.3	1752	gCg/gTg																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10265313	10265313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	57	420	0	ENST00000340748.4:c.1733C>T	p.Thr578Ile	p.T578I	ENST00000340748		578	aCa/aTa																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11118683	11118683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	124	528	0	ENST00000344626.4:c.2107G>A	p.Ala703Thr	p.A703T	ENST00000344626	NM_003072.3	703	Gcg/Acg																																													NEWRECORD																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52729010	52729010	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	53	434	0	ENST00000322088.6:c.1702A>G	p.Thr568Ala	p.T568A	ENST00000322088	NM_014225.5	568	Acc/Gcc																																													NEWRECORD																																		
SH2D1A	4068	MSKCC	GRCh37	X	123504029	123504029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	13	186	0	ENST00000371139.4:c.205G>A	p.Ala69Thr	p.A69T	ENST00000371139	NM_001114937.2	69	Gca/Aca																																													NEWRECORD																																		
BBC3	27113	MSKCC	GRCh37	19	47725019	47725019	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	135	573	0	ENST00000449228.1:c.725del	p.Gly242AlafsTer48	p.G242Afs*48	ENST00000449228	NM_001127240.2	242	gGc/gc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112170660	112170660	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	38	323	0	ENST00000257430.4:c.1759del	p.Ser587AlafsTer3	p.S587Afs*3	ENST00000257430	NM_000038.5	586	Aaa/aa																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5240271	5240271	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	62	483	0	ENST00000357368.4:c.1643del	p.Pro548ArgfsTer37	p.P548Rfs*37	ENST00000357368	NM_002850.3	548	cCg/cg																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52620442	52620442	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	43	355	0	ENST00000394830.3:c.3311del	p.Lys1104ArgfsTer30	p.K1104Rfs*30	ENST00000394830	NM_018313.4	1104	aAg/ag																																													NEWRECORD																																		
INHA	3623	MSKCC	GRCh37	2	220437288	220437288	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	100	712	2	ENST00000243786.2:c.197del	p.Gly66AlafsTer61	p.G66Afs*61	ENST00000243786	NM_002191.3	64	ctG/ct																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72991709	72991711	+	inframe_deletion	In_Frame_Del	DEL	GCA	GCA	-			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	36	249	0	ENST00000268489.5:c.2334_2336delTGC	p.Ala784del	p.A784del	ENST00000268489	NM_006885.3	778	gcTGCg/gcg																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001484-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			822	92	600	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27088787	27088788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001484-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			663	44	608	0	ENST00000324856.7:c.2402dupG	p.Gln802SerfsTer15	p.Q802Sfs*15	ENST00000324856	NM_006015.4	799	cag/caGg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108164065	108164066	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GATA			P-0001484-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	34	467	0	ENST00000278616.4:c.4642_4645dup	p.Asn1549ArgfsTer2	p.N1549Rfs*2	ENST00000278616	NM_000051.3	1546	gtg/gtGATAg																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81372758	81372758	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001832-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			444	191	510	0	ENST00000222390.5:c.776A>G	p.Tyr259Cys	p.Y259C	ENST00000222390	NM_000601.4	259	tAt/tGt																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0001832-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1034	2472	507	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578414	7578414	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001832-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			155	287	390	0	ENST00000269305.4:c.516delT	p.Val173Ter	p.V173*	ENST00000269305	NM_001126112.2	172	gtT/gt																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11097199	11097200	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCCCT			P-0001832-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	129	337	0	ENST00000344626.4:c.708_713dup	p.Gly243_Pro244dup	p.G243_P244dup	ENST00000344626	NM_003072.3	243	-/GGCCCT																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717777	89717777	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0014571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	140	244	0	ENST00000371953.3:c.801+1G>T		p.X267_splice	ENST00000371953	NM_000314.4	267																																														NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	346	481	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																													NEWRECORD																																		
NTRK2	4915	MSKCC	GRCh37	9	87570325	87570325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	331	521	0	ENST00000277120.3:c.2065G>A	p.Val689Met	p.V689M	ENST00000277120		689	Gtg/Atg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49427878	49427879	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	191	517	0	ENST00000301067.7:c.10711dup	p.Gln3571ProfsTer20	p.Q3571Pfs*20	ENST00000301067	NM_003482.3	3571	cag/cCag																																													NEWRECORD																																		
TP53BP1	7158	MSKCC	GRCh37	15	43700219	43700219	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	220	475	0	ENST00000382044.4:c.5668delC	p.Leu1890TrpfsTer9	p.L1890Wfs*9	ENST00000382044	NM_001141980.1	1890	Ctg/tg																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	349	285	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			114	105	135	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	193	247	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																													NEWRECORD																																		
PIK3CD	5293	MSKCC	GRCh37	1	9780197	9780197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	135	304	1	ENST00000377346.4:c.1367C>T	p.Thr456Met	p.T456M	ENST00000377346	NM_005026.3	456	aCg/aTg																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16199610	16199610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	65	131	0	ENST00000375759.3:c.383G>A	p.Arg128His	p.R128H	ENST00000375759	NM_015001.2	128	cGt/cAt																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47702265	47702265	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			192	173	328	0	ENST00000233146.2:c.1861C>T	p.Arg621Ter	p.R621*	ENST00000233146	NM_000251.2	621	Cga/Tga																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212285314	212285314	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			436	181	275	0	ENST00000342788.4:c.2987C>A	p.Pro996His	p.P996H	ENST00000342788	NM_005235.2	996	cCc/cAc																																													NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215646033	215646033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	202	297	0	ENST00000260947.4:c.565G>A	p.Ala189Thr	p.A189T	ENST00000260947	NM_000465.2	189	Gca/Aca																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47098586	47098586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	161	241	0	ENST00000409792.3:c.6688G>A	p.Ala2230Thr	p.A2230T	ENST00000409792	NM_014159.6	2230	Gca/Aca																																													NEWRECORD																																		
BAP1	8314	MSKCC	GRCh37	3	52437440	52437440	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761596789		P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			181	94	115	0	ENST00000460680.1:c.1721C>T	p.Ala574Val	p.A574V	ENST00000460680	NM_004656.3	574	gCg/gTg																																													NEWRECORD																																		
GSK3B	2932	MSKCC	GRCh37	3	119642254	119642254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	203	257	0	ENST00000316626.5:c.443G>A	p.Arg148Gln	p.R148Q	ENST00000316626		148	cGa/cAa																																													NEWRECORD																																		
FOXL2	668	MSKCC	GRCh37	3	138664460	138664460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			162	89	105	0	ENST00000330315.3:c.1105G>A	p.Ala369Thr	p.A369T	ENST00000330315	NM_023067.3	369	Gcg/Acg																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56177626	56177626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			407	185	262	0	ENST00000399503.3:c.2599G>A	p.Glu867Lys	p.E867K	ENST00000399503	NM_005921.1	867	Gaa/Aaa																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2969697	2969697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	85	220	0	ENST00000396946.4:c.1582G>A	p.Glu528Lys	p.E528K	ENST00000396946	NM_032415.4	528	Gag/Aag																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106508499	106508499	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752602335		P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			117	44	74	0	ENST00000359195.3:c.493G>A	p.Val165Ile	p.V165I	ENST00000359195	NM_002649.2	165	Gtc/Atc																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108155142	108155142	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	173	310	0	ENST00000278616.4:c.3935G>T	p.Arg1312Ile	p.R1312I	ENST00000278616	NM_000051.3	1312	aGa/aTa																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32950861	32950861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	209	315	0	ENST00000380152.3:c.8687G>A	p.Arg2896His	p.R2896H	ENST00000380152		2896	cGt/cAt																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23646627	23646627	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	105	235	0	ENST00000261584.4:c.1240C>T	p.Arg414Ter	p.R414*	ENST00000261584	NM_024675.3	414	Cga/Tga																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37618997	37618997	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	23	202	0	ENST00000447079.4:c.673A>G	p.Arg225Gly	p.R225G	ENST00000447079	NM_015083.1	225	Agg/Ggg																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10248621	10248621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	109	261	0	ENST00000340748.4:c.4132C>T	p.Arg1378Trp	p.R1378W	ENST00000340748		1378	Cgg/Tgg																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57485868	57485868	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	132	229	0	ENST00000371085.3:c.1169A>G	p.Gln390Arg	p.Q390R	ENST00000371085	NM_000516.4	390	cAg/cGg																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66937372	66937372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			137	272	230	0	ENST00000374690.3:c.2226G>T	p.Trp742Cys	p.W742C	ENST00000374690	NM_000044.3	742	tgG/tgT																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			164	297	188	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65339129	65339129	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	153	271	0	ENST00000342505.4:c.407del	p.Asn136MetfsTer32	p.N136Mfs*32	ENST00000342505	NM_002227.2	136	aAt/at																																													NEWRECORD																																		
MLH1	4292	MSKCC	GRCh37	3	37070349	37070349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1220422495		P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			425	181	319	0	ENST00000231790.2:c.1489del	p.Arg497GlyfsTer11	p.R497Gfs*11	ENST00000231790	NM_000249.3	495	aCc/ac																																													NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	235	421	0	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																													NEWRECORD																																		
PAX5	5079	MSKCC	GRCh37	9	37020768	37020769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			455	160	315	0	ENST00000358127.4:c.76dupG	p.Val26GlyfsTer49	p.V26Gfs*49	ENST00000358127	NM_001280556.1	26	gtt/gGtt																																													NEWRECORD																																		
KLF4	9314	MSKCC	GRCh37	9	110250508	110250508	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	71	131	0	ENST00000374672.4:c.167del	p.Pro56GlnfsTer58	p.P56Qfs*58	ENST00000374672	NM_004235.4	56	cCa/ca																																													NEWRECORD																																		
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			450	142	299	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	57	370	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0012090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	80	502	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	48	454	0	ENST00000269305.4:c.314del	p.Gly105AlafsTer18	p.G105Afs*18	ENST00000269305	NM_001126112.2	105	gGc/gc																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56448328	56448328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199909371		P-0012090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	56	405	0	ENST00000407977.2:c.319G>A	p.Val107Ile	p.V107I	ENST00000407977		107	Gtc/Atc																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2223461	2223461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	30	321	0	ENST00000398665.3:c.3572C>T	p.Ser1191Phe	p.S1191F	ENST00000398665	NM_032482.2	1191	tCt/tTt																																													NEWRECORD																																		
CHEK2	11200	MSKCC	GRCh37	22	29121292	29121292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1487	105	613	0	ENST00000328354.6:c.383C>T	p.Pro128Leu	p.P128L	ENST00000328354	NM_007194.3	128	cCa/cTa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0009617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	475	616	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	132	355	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																													NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115258744	115258744	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434596		P-0009617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	192	373	0	ENST00000369535.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000369535	NM_002524.4	13	gGt/gAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0009617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	188	319	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																													NEWRECORD																																		
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0009617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	248	424	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10248552	10248552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	387	528	0	ENST00000340748.4:c.4201C>T	p.Arg1401Trp	p.R1401W	ENST00000340748		1401	Cgg/Tgg																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15281257	15281257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	351	418	0	ENST00000263388.2:c.4999C>T	p.Arg1667Cys	p.R1667C	ENST00000263388	NM_000435.2	1667	Cgc/Tgc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175969	112175970	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	163	310	0	ENST00000257430.4:c.4682dupA	p.Asp1562GlyfsTer5	p.D1562Gfs*5	ENST00000257430	NM_000038.5	1560	gaa/gAaa																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0002281-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	67	567	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																													NEWRECORD																																		
NFE2L2	4780	MSKCC	GRCh37	2	178097304	178097304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002281-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			497	57	436	0	ENST00000397062.3:c.410C>T	p.Ser137Leu	p.S137L	ENST00000397062	NM_006164.4	137	tCg/tTg																																													NEWRECORD																																		
JUN	3725	MSKCC	GRCh37	1	59247846	59247847	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002281-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			816	100	775	0	ENST00000371222.2:c.896dupA	p.Asn299LysfsTer11	p.N299Kfs*11	ENST00000371222	NM_002228.3	299	aac/aaAc																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67063316	67063338	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCGTCGTGCCCGACCAGAGAA	GCGCGTCGTGCCCGACCAGAGAA	-			P-0002281-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	25	246	0	ENST00000412916.2:c.8_30delGCGTCGTGCCCGACCAGAGAAGC	p.Arg3GlnfsTer9	p.R3Qfs*9	ENST00000412916		2	ccGCGCGTCGTGCCCGACCAGAGAAgc/ccgc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000985-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	44	138	0	ENST00000346208.3:c.1275dupA	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	73	410	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0008260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	41	310	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	31	264	1	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0009822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	321	653	2	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	253	686	0	ENST00000269571.5:c.2329G>C	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ctg																																													NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31375079	31375079	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764064020		P-0009822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	92	532	0	ENST00000328111.2:c.476C>T	p.Pro159Leu	p.P159L	ENST00000328111	NM_006892.3	159	cCg/cTg																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68857393	68857394	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0009822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	228	472	0	ENST00000261769.5:c.2029_2030dupCA	p.Gln677HisfsTer3	p.Q677Hfs*3	ENST00000261769	NM_004360.3	676	-/CA																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	62	306	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89685307	89685307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	72	242	0	ENST00000371953.3:c.202T>C	p.Tyr68His	p.Y68H	ENST00000371953	NM_000314.4	68	Tac/Cac																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs770248150		P-0011380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	122	495	0	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																													NEWRECORD																																		
MAP2K1	5604	MSKCC	GRCh37	15	66729181	66729181	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	92	492	0	ENST00000307102.5:c.389A>G	p.Tyr130Cys	p.Y130C	ENST00000307102	NM_002755.3	130	tAt/tGt																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17122487	17122487	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	136	673	0	ENST00000285071.4:c.908del	p.Glu303GlyfsTer20	p.E303Gfs*20	ENST00000285071	NM_144997.5	303	gAg/gg																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71026116	71026117	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAGT			P-0011380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	47	400	0	ENST00000318789.4:c.1502_1505dup	p.Phe502LeufsTer16	p.F502Lfs*16	ENST00000318789	NM_032682.5	502	ttc/ttACTTc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	275	545	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	347	598	0	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																													NEWRECORD																																		
FH	2271	MSKCC	GRCh37	1	241683007	241683007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	274	494	0	ENST00000366560.3:c.16C>T	p.Arg6Trp	p.R6W	ENST00000366560	NM_000143.3	6	Cgg/Tgg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27107195	27107195	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	283	486	0	ENST00000324856.7:c.6806C>G	p.Ser2269Ter	p.S2269*	ENST00000324856	NM_006015.4	2269	tCa/tGa																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061461	38061461	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	275	507	0	ENST00000250448.2:c.528C>G	p.Ile176Met	p.I176M	ENST00000250448	NM_004496.3	176	atC/atG																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68845741	68845742	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	288	414	2	ENST00000261769.5:c.988dup	p.Thr330AsnfsTer20	p.T330Nfs*20	ENST00000261769	NM_004360.3	329	-/A																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579714	7579714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	263	585	0	ENST00000269305.4:c.82G>A	p.Glu28Lys	p.E28K	ENST00000269305	NM_001126112.2	28	Gaa/Aaa																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2216319	2216319	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	302	584	0	ENST00000398665.3:c.1963G>C	p.Glu655Gln	p.E655Q	ENST00000398665	NM_032482.2	655	Gag/Cag																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2216484	2216484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	384	699	0	ENST00000398665.3:c.2128G>A	p.Glu710Lys	p.E710K	ENST00000398665	NM_032482.2	710	Gag/Aag																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2216586	2216586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	421	708	0	ENST00000398665.3:c.2230G>A	p.Asp744Asn	p.D744N	ENST00000398665	NM_032482.2	744	Gac/Aac																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134911464	134911464	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	297	608	0	ENST00000398015.3:c.1929G>C	p.Lys643Asn	p.K643N	ENST00000398015	NM_004441.4	643	aaG/aaC																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56179353	56179353	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	107	207	0	ENST00000399503.3:c.3667-1G>A		p.X1223_splice	ENST00000399503	NM_005921.1	1223																																														NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176639025	176639025	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	345	615	0	ENST00000439151.2:c.3625C>G	p.Pro1209Ala	p.P1209A	ENST00000439151	NM_022455.4	1209	Cct/Gct																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176639119	176639119	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	343	563	0	ENST00000439151.2:c.3719C>G	p.Ser1240Cys	p.S1240C	ENST00000439151	NM_022455.4	1240	tCc/tGc																																													NEWRECORD																																		
EZH2	2146	MSKCC	GRCh37	7	148526919	148526919	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	230	428	0	ENST00000320356.2:c.385C>G	p.His129Asp	p.H129D	ENST00000320356	NM_004456.4	129	Cat/Gat																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151850018	151850018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	121	367	2	ENST00000262189.6:c.12298G>A	p.Ala4100Thr	p.A4100T	ENST00000262189	NM_170606.2	4100	Gca/Aca																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135787747	135787747	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	318	509	0	ENST00000298552.3:c.835C>A	p.His279Asn	p.H279N	ENST00000298552	NM_001162426.1	279	Cac/Aac																																													NEWRECORD																																		
DUSP4	1846	MSKCC	GRCh37	8	29207468	29207471	+	stop_gained	Nonsense_Mutation	ONP	CGTC	CGTC	AGTT			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	224	343	0	ENST00000240100.2:c.325_328delinsAACT	p.Asp109_Glu110delinsAsnTer	p.D109_E110delinsN*	ENST00000240100	NM_001394.6	109	GACGag/AACTag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0012233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	488	564	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																													NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0012233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	499	617	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398123121		P-0012233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	353	400	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140482926	140482927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs777474487		P-0012233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	205	569	2	ENST00000288602.6:c.1208dup	p.Ala404CysfsTer9	p.A404Cfs*9	ENST00000288602	NM_004333.4	403	cct/ccCt																																													NEWRECORD																																		
FUBP1	8880	MSKCC	GRCh37	1	78433879	78433879	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	178	534	0	ENST00000370768.2:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000370768	NM_003902.3	74	Gat/Tat																																													NEWRECORD																																		
FGF3	2248	MSKCC	GRCh37	11	69625107	69625107	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	188	362	0	ENST00000334134.2:c.686G>C	p.Arg229Thr	p.R229T	ENST00000334134	NM_005247.2	229	aGa/aCa																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44913167	44913167	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	221	922	0	ENST00000377967.4:c.842C>G	p.Pro281Arg	p.P281R	ENST00000377967	NM_021140.2	281	cCt/cGt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	182	380	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0005908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	263	547	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0005908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	160	346	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227661845	227661845	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	184	334	0	ENST00000305123.5:c.1610A>G	p.Gln537Arg	p.Q537R	ENST00000305123	NM_005544.2	537	cAg/cGg																																													NEWRECORD																																		
MYD88	4615	MSKCC	GRCh37	3	38180165	38180165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	119	248	0	ENST00000396334.3:c.13C>T	p.Arg5Cys	p.R5C	ENST00000396334	NM_002468.4	5	Cgc/Tgc																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106508490	106508490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	74	129	0	ENST00000359195.3:c.484G>A	p.Val162Ile	p.V162I	ENST00000359195	NM_002649.2	162	Gtc/Atc																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67063672	67063672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	215	349	0	ENST00000412916.2:c.121C>T	p.Gln41Ter	p.Q41*	ENST00000412916		41	Cag/Tag																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	311	258	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																													NEWRECORD																																		
NFE2L2	4780	MSKCC	GRCh37	2	178098885	178098886	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	210	459	0	ENST00000397062.3:c.159dupA	p.Leu54ThrfsTer2	p.L54Tfs*2	ENST00000397062	NM_006164.4	53	-/A																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67522799	67522800	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0005908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	131	309	1	ENST00000274335.5:c.297_298dup	p.Gly100GlufsTer15	p.G100Efs*15	ENST00000274335		99	cca/ccAGa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			459	287	497	2	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55211065	55211065	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	555	413	0	ENST00000275493.2:c.308A>T	p.Asn103Ile	p.N103I	ENST00000275493	NM_005228.3	103	aAc/aTc																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46246224	46246224	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			726	85	357	0	ENST00000334344.6:c.4318C>G	p.Gln1440Glu	p.Q1440E	ENST00000334344	NM_152641.2	1440	Cag/Gag																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48923160	48923160	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0001278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			221	154	311	0	ENST00000267163.4:c.607+1G>T		p.X203_splice	ENST00000267163	NM_000321.2	203																																														NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	348223	348223	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	50	201	0	ENST00000262320.3:c.1283C>A	p.Ser428Ter	p.S428*	ENST00000262320	NM_003502.3	428	tCg/tAg																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89831395	89831395	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			542	80	369	0	ENST00000389301.3:c.2681G>C	p.Arg894Thr	p.R894T	ENST00000389301	NM_000135.2	894	aGa/aCa																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29490319	29490319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			822	254	377	1	ENST00000358273.4:c.404G>A	p.Arg135Gln	p.R135Q	ENST00000358273	NM_001042492.2	135	cGg/cAg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49444487	49444488	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			509	230	253	0	ENST00000301067.7:c.2883dup	p.Gly962TrpfsTer7	p.G962Wfs*7	ENST00000301067	NM_003482.3	961	-/T																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0007276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	153	356	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	89	221	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30681828	30681828	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	184	350	0	ENST00000376406.3:c.269G>T	p.Arg90Leu	p.R90L	ENST00000376406	NM_014641.2	90	cGa/cTa																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974690	21974691	+	inframe_insertion	In_Frame_Ins	INS	-	-	GACCGT			P-0007276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	120	307	0	ENST00000304494.5:c.131_136dup	p.Gly45_Arg46insHisGly	p.G45_R46insHG	ENST00000304494	NM_000077.4	46	cgg/cACGGTCgg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0005190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	192	150	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10597395	10597395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	247	231	0	ENST00000171111.5:c.1808G>T	p.Gly603Val	p.G603V	ENST00000171111	NM_203500.1	603	gGg/gTg																																													NEWRECORD																																		
HIST1H3B	8358	MSKCC	GRCh37	6	26031964	26031964	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	296	181	0	ENST00000244661.2:c.325A>G	p.Asn109Asp	p.N109D	ENST00000244661	NM_003537.3	109	Aac/Gac																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1220705	1220706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	116	318	0	ENST00000326873.7:c.727dup	p.Val243GlyfsTer23	p.V243Gfs*23	ENST00000326873	NM_000455.4	241	-/G																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0007303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	574	439	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	341	479	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106509436	106509436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	209	594	1	ENST00000359195.3:c.1430G>A	p.Arg477His	p.R477H	ENST00000359195	NM_002649.2	477	cGt/cAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173926	112173926	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	347	487	0	ENST00000257430.4:c.2635C>T	p.Gln879Ter	p.Q879*	ENST00000257430	NM_000038.5	879	Cag/Tag																																													NEWRECORD																																		
PIK3CD	5293	MSKCC	GRCh37	1	9782128	9782128	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	104	681	0	ENST00000377346.4:c.2151G>T	p.Leu717Phe	p.L717F	ENST00000377346	NM_005026.3	717	ttG/ttT																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174355	112174355	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	204	379	0	ENST00000257430.4:c.3064G>C	p.Asp1022His	p.D1022H	ENST00000257430	NM_000038.5	1022	Gat/Cat																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32188853	32188853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs192478549		P-0007303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	419	625	0	ENST00000375023.3:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000375023	NM_004557.3	234	cGg/cAg																																													NEWRECORD																																		
CDKN2B	1030	MSKCC	GRCh37	9	22006218	22006218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	135	403	1	ENST00000276925.6:c.185C>T	p.Ala62Val	p.A62V	ENST00000276925	NM_004936.3	62	gCg/gTg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578547	7578560	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGGAGTACTGTAG	GGGGAGTACTGTAG	-			P-0007303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	666	584	0	ENST00000269305.4:c.376-6_383del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																														NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0001424-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			662	393	443	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001424-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			268	65	161	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001424-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	62	210	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0001424-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			313	143	350	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66201672	66201672	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001424-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1029	146	643	0	ENST00000273854.3:c.2830A>G	p.Thr944Ala	p.T944A	ENST00000273854	NM_004439.5	944	Acg/Gcg																																													NEWRECORD																																		
FGFR1	2260	MSKCC	GRCh37	8	38285870	38285870	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0001424-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			687	238	706	1	ENST00000425967.3:c.541C>T	p.Pro181Ser	p.P181S	ENST00000425967	NM_001174067.1	181	Ccc/Tcc																																													NEWRECORD																																		
MEF2B	100271849	MSKCC	GRCh37	19	19261493	19261493	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0001424-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			706	265	708	0	ENST00000162023.5:c.52C>A	p.Gln18Lys	p.Q18K	ENST00000162023		18	Cag/Aag																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76763953	76763953	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001424-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1099	200	796	0	ENST00000373344.5:c.7355A>T	p.Gln2452Leu	p.Q2452L	ENST00000373344	NM_000489.3	2452	cAg/cTg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112116586	112116587	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001424-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	92	308	0	ENST00000257430.4:c.636dup	p.Arg213ThrfsTer39	p.R213Tfs*39	ENST00000257430	NM_000038.5	211	gaa/gAaa																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142211996	142211997	+	missense_variant	Missense_Mutation	DNP	TT	TT	AA			P-0001424-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1075	59	639	0	ENST00000350721.4:c.6055_6056inv	p.Asn2019Phe	p.N2019F	ENST00000350721	NM_001184.3	2019	AAt/TTt																																													NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0014814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	649	414	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111499	8111500	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	200	643	0	ENST00000346208.3:c.987dup	p.Arg330GlufsTer22	p.R330Efs*22	ENST00000346208		329	agg/aGgg																																													NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64129169	64129169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	231	616	1	ENST00000334205.4:c.707C>T	p.Ser236Leu	p.S236L	ENST00000334205	NM_003942.2	236	tCg/tTg																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16199339	16199339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	123	319	0	ENST00000375759.3:c.112C>T	p.Leu38Phe	p.L38F	ENST00000375759	NM_015001.2	38	Ctt/Ttt																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120483247	120483263	+	frameshift_variant	Frame_Shift_Del	DEL	TCCCTCATTCAGGCATG	TCCCTCATTCAGGCATG	-			P-0014814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	262	429	0	ENST00000256646.2:c.3098_3114del	p.Pro1033HisfsTer4	p.P1033Hfs*4	ENST00000256646	NM_024408.3	1033	cCATGCCTGAATGAGGGA/c																																													NEWRECORD																																		
WHSC1	7468	MSKCC	GRCh37	4	1961416	1961416	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	337	571	0	ENST00000382891.5:c.3204C>G	p.Ile1068Met	p.I1068M	ENST00000382891	NM_133335.3	1068	atC/atG																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187630152	187630152	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	203	519	0	ENST00000441802.2:c.830C>G	p.Thr277Arg	p.T277R	ENST00000441802	NM_005245.3	277	aCa/aGa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0002268-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			156	48	505	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0002268-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	80	660	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41547958	41547958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002268-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	64	500	0	ENST00000263253.7:c.2939C>T	p.Ala980Val	p.A980V	ENST00000263253	NM_001429.3	980	gCc/gTc																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108173695	108173696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002268-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	42	484	0	ENST00000278616.4:c.5441dup	p.Leu1814PhefsTer9	p.L1814Ffs*9	ENST00000278616	NM_000051.3	1812	gct/gcTt																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119730	70119731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002268-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	115	595	0	ENST00000245479.2:c.733dup	p.Val245GlyfsTer7	p.V245Gfs*7	ENST00000245479	NM_000346.3	244	-/G																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0013186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	108	580	3	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																													NEWRECORD																																		
PMS2	5395	MSKCC	GRCh37	7	6026741	6026741	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	67	270	0	ENST00000265849.7:c.1655A>T	p.His552Leu	p.H552L	ENST00000265849	NM_000535.5	552	cAt/cTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579445	7579446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	276	526	0	ENST00000269305.4:c.241dup	p.Thr81AsnfsTer68	p.T81Nfs*68	ENST00000269305	NM_001126112.2	81	aca/aAca																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	125	557	4	ENST00000380152.3:c.5351delA	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	68	263	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	60	302	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	86	307	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238758086		P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	150	379	0	ENST00000358026.2:c.2729C>T	p.Thr910Met	p.T910M	ENST00000358026	NM_001128849.1	910	aCg/aTg																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98209616	98209617	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761353734		P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	60	243	0	ENST00000331920.6:c.3921dup	p.Arg1308GlnfsTer17	p.R1308Qfs*17	ENST00000331920	NM_000264.3	1307	-/C																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	63	199	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	12	190	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	177	463	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	142	381	0	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																													NEWRECORD																																		
MEF2B	100271849	MSKCC	GRCh37	19	19261529	19261529	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	120	428	0	ENST00000162023.5:c.16del	p.Ile6SerfsTer14	p.I6Sfs*14	ENST00000162023		6	Atc/tc																																													NEWRECORD																																		
RFWD2	64326	MSKCC	GRCh37	1	176015428	176015428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	111	389	0	ENST00000367669.3:c.1310C>T	p.Ala437Val	p.A437V	ENST00000367669	NM_022457.5	437	gCg/gTg																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49933240	49933240	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143096514		P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	209	499	2	ENST00000296474.3:c.2870C>T	p.Thr957Met	p.T957M	ENST00000296474	NM_002447.2	957	aCg/aTg																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47161939	47161939	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	57	282	0	ENST00000409792.3:c.4187del	p.Asn1396MetfsTer16	p.N1396Mfs*16	ENST00000409792	NM_014159.6	1396	aAt/at																																													NEWRECORD																																		
PIK3CD	5293	MSKCC	GRCh37	1	9784085	9784085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	126	377	2	ENST00000377346.4:c.2653G>A	p.Ala885Thr	p.A885T	ENST00000377346	NM_005026.3	885	Gcc/Acc																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47637338	47637338	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	108	485	0	ENST00000233146.2:c.472C>T	p.Gln158Ter	p.Q158*	ENST00000233146	NM_000251.2	158	Cag/Tag																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47702269	47702269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	92	428	1	ENST00000233146.2:c.1865C>A	p.Pro622Gln	p.P622Q	ENST00000233146	NM_000251.2	622	cCa/cAa																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49928036	49928036	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199869962		P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	91	416	0	ENST00000296474.3:c.3692G>A	p.Arg1231His	p.R1231H	ENST00000296474	NM_002447.2	1231	cGc/cAc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916838	178916838	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1132	79	559	0	ENST00000263967.3:c.225A>C	p.Gln75His	p.Q75H	ENST00000263967	NM_006218.2	75	caA/caC																																													NEWRECORD																																		
SDHA	6389	MSKCC	GRCh37	5	235390	235390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	116	288	0	ENST00000264932.6:c.1196C>A	p.Pro399Gln	p.P399Q	ENST00000264932	NM_004168.2	399	cCg/cAg																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30672848	30672848	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1265	199	685	1	ENST00000376406.3:c.4112C>A	p.Pro1371His	p.P1371H	ENST00000376406	NM_014641.2	1371	cCt/cAt																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	93964481	93964481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	114	453	0	ENST00000369303.4:c.2416G>A	p.Glu806Lys	p.E806K	ENST00000369303	NM_004440.3	806	Gaa/Aaa																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157099080	157099080	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	55	125	0	ENST00000346085.5:c.17G>C	p.Gly6Ala	p.G6A	ENST00000346085	NM_020732.3	6	gGc/gCc																																													NEWRECORD																																		
RAD21	5885	MSKCC	GRCh37	8	117864801	117864801	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	111	407	0	ENST00000297338.2:c.1308G>C	p.Gln436His	p.Q436H	ENST00000297338	NM_006265.2	436	caG/caC																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43596068	43596068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	105	375	1	ENST00000355710.3:c.235C>T	p.Arg79Trp	p.R79W	ENST00000355710	NM_020975.4	79	Cgg/Tgg																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63852292	63852292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	109	313	0	ENST00000279873.7:c.3070G>A	p.Ala1024Thr	p.A1024T	ENST00000279873	NM_032199.2	1024	Gca/Aca																																													NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64137198	64137198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	127	330	0	ENST00000334205.4:c.1630G>A	p.Gly544Arg	p.G544R	ENST00000334205	NM_003942.2	544	Ggg/Agg																																													NEWRECORD																																		
PGR	5241	MSKCC	GRCh37	11	100909984	100909984	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	121	469	0	ENST00000325455.5:c.2665C>A	p.Leu889Met	p.L889M	ENST00000325455	NM_001202474.3	889	Ctg/Atg																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118307646	118307646	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	45	148	0	ENST00000534358.1:c.419G>T	p.Gly140Val	p.G140V	ENST00000534358	NM_005933.3	140	gGc/gTc																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	416796	416796	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756725945		P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	109	404	0	ENST00000399788.2:c.3754C>T	p.Arg1252Cys	p.R1252C	ENST00000399788	NM_001042603.1	1252	Cgt/Tgt																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49416647	49416647	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	93	284	0	ENST00000301067.7:c.16064T>G	p.Leu5355Arg	p.L5355R	ENST00000301067	NM_003482.3	5355	cTg/cGg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49433611	49433611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	109	373	0	ENST00000301067.7:c.7942C>T	p.Pro2648Ser	p.P2648S	ENST00000301067	NM_003482.3	2648	Cca/Tca																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28877305	28877305	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	89	229	0	ENST00000282397.4:c.4016A>G	p.Ter1339TrpextTer20	p.*1339Wext*20	ENST00000282397	NM_002019.4	1339	tAg/tGg																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95577766	95577766	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	114	354	0	ENST00000343455.3:c.2144T>C	p.Val715Ala	p.V715A	ENST00000343455	NM_177438.2	715	gTt/gCt																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007792	45007792	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	64	317	0	ENST00000558401.1:c.239G>A	p.Trp80Ter	p.W80*	ENST00000558401	NM_004048.2	80	tGg/tAg																																													NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91354607	91354607	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	121	486	0	ENST00000355112.3:c.4047A>C	p.Lys1349Asn	p.K1349N	ENST00000355112	NM_000057.2	1349	aaA/aaC																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99486163	99486163	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	52	306	0	ENST00000268035.6:c.3469A>G	p.Thr1157Ala	p.T1157A	ENST00000268035	NM_000875.3	1157	Acg/Gcg																																													NEWRECORD																																		
TRAF7	84231	MSKCC	GRCh37	16	2224023	2224023	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	111	461	0	ENST00000326181.6:c.1237A>G	p.Ser413Gly	p.S413G	ENST00000326181	NM_032271.2	413	Agt/Ggt																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72845511	72845511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	203	502	0	ENST00000268489.5:c.3829G>A	p.Val1277Met	p.V1277M	ENST00000268489	NM_006885.3	1277	Gtg/Atg																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89816187	89816187	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	94	354	0	ENST00000389301.3:c.3190A>G	p.Ser1064Gly	p.S1064G	ENST00000389301	NM_000135.2	1064	Agc/Ggc																																													NEWRECORD																																		
RAD51D	5892	MSKCC	GRCh37	17	33430327	33430327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	149	422	0	ENST00000335858.7:c.348G>A	p.Met116Ile	p.M116I	ENST00000335858	NM_133629.2	116	atG/atA																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37883770	37883770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	138	406	0	ENST00000269571.5:c.3382G>A	p.Val1128Ile	p.V1128I	ENST00000269571		1128	Gtt/Att																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10249155	10249155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	141	367	0	ENST00000340748.4:c.4027G>A	p.Val1343Met	p.V1343M	ENST00000340748		1343	Gtg/Atg																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15278185	15278185	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	146	389	0	ENST00000263388.2:c.5237A>G	p.Asp1746Gly	p.D1746G	ENST00000263388	NM_000435.2	1746	gAt/gGt																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17943670	17943670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	109	339	0	ENST00000458235.1:c.2419C>T	p.Gln807Ter	p.Q807*	ENST00000458235	NM_000215.3	807	Cag/Tag																																													NEWRECORD																																		
TMPRSS2	7113	MSKCC	GRCh37	21	42843771	42843771	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	101	341	0	ENST00000398585.3:c.1148T>C	p.Ile383Thr	p.I383T	ENST00000398585	NM_001135099.1	383	aTt/aCt																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63409784	63409784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	113	457	1	ENST00000330258.3:c.3383C>T	p.Ala1128Val	p.A1128V	ENST00000330258	NM_152424.3	1128	gCc/gTc																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	119	441	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9523310	9523311	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	116	402	0	ENST00000353224.5:c.1926dupC	p.Tyr643LeufsTer4	p.Y643Lfs*4	ENST00000353224	NM_177990.2	642	-/C																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114710595	114710597	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs754968616		P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	212	511	1	ENST00000543371.1:c.85_87del	p.Glu29del	p.E29del	ENST00000543371	NM_001198531.1	27	cAGGag/cag																																													NEWRECORD																																		
MYOD1	4654	MSKCC	GRCh37	11	17742462	17742463	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	106	390	0	ENST00000250003.3:c.650dup	p.Ser218GlufsTer60	p.S218Efs*60	ENST00000250003	NM_002478.4	215	ggc/ggCc																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139400023	139400023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	68	307	1	ENST00000277541.6:c.4325del	p.Pro1442ArgfsTer3	p.P1442Rfs*3	ENST00000277541	NM_017617.3	1442	cCg/cg																																													NEWRECORD																																		
ERCC4	2072	MSKCC	GRCh37	16	14041976	14041977	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	53	301	0	ENST00000311895.7:c.2526_2527del	p.Lys843ValfsTer2	p.K843Vfs*2	ENST00000311895	NM_005236.2	841	tcAGag/tcag																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45368256	45368256	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	70	411	0	ENST00000262160.6:c.1346del	p.Leu449TrpfsTer5	p.L449Wfs*5	ENST00000262160	NM_005901.5	449	tTg/tg																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133245024	133245024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	98	312	3	ENST00000320574.5:c.2091del	p.Leu698CysfsTer94	p.L698Cfs*94	ENST00000320574	NM_006231.2	697	ccC/cc																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42795269	42795269	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	92	321	0	ENST00000575354.2:c.2353delG	p.Ala785ProfsTer139	p.A785Pfs*139	ENST00000575354	NM_015125.3	783	caG/ca																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003006-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			667	102	473	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176636973	176636973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003006-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			525	65	356	0	ENST00000439151.2:c.1573C>T	p.Arg525Trp	p.R525W	ENST00000439151	NM_022455.4	525	Cgg/Tgg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577106	7577107	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAGGC			P-0003006-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			757	104	526	0	ENST00000269305.4:c.826_831dup	p.Ala276_Cys277dup	p.A276_C277dup	ENST00000269305	NM_001126112.2	276	-/GCCTGT																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435675	56435676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAGGC			P-0003006-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	34	211	0	ENST00000407977.2:c.1457_1461dup	p.Gln488AlafsTer16	p.Q488Afs*16	ENST00000407977		487	-/GCCTA																																													NEWRECORD																																		
IGF2	3481	MSKCC	GRCh37	11	2154252	2154252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			29	115	434	1	ENST00000434045.2:c.676G>A	p.Gly226Ser	p.G226S	ENST00000434045	NM_001127598.1	226	Ggc/Agc																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76918997	76918997	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0004595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	145	573	1	ENST00000373344.5:c.3994A>T	p.Lys1332Ter	p.K1332*	ENST00000373344	NM_000489.3	1332	Aag/Tag																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3778819	3778820	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			27	141	270	0	ENST00000262367.5:c.6228dup	p.Pro2077AlafsTer264	p.P2077Afs*264	ENST00000262367	NM_004380.2	2076	-/G																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64575546	64575547	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0004595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			52	254	346	0	ENST00000337652.1:c.485_486del	p.Val162GlyfsTer22	p.V162Gfs*22	ENST00000337652	NM_130803.2	162	gTG/g																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	315	379	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
IRF4	3662	MSKCC	GRCh37	6	395910	395910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	300	526	0	ENST00000380956.4:c.467C>T	p.Thr156Met	p.T156M	ENST00000380956	NM_001195286.1	156	aCg/aTg																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11316069	11316069	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	227	335	0	ENST00000361445.4:c.685C>T	p.Gln229Ter	p.Q229*	ENST00000361445	NM_004958.3	229	Cag/Tag																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11316081	11316081	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	247	366	0	ENST00000361445.4:c.673C>G	p.Pro225Ala	p.P225A	ENST00000361445	NM_004958.3	225	Ccg/Gcg																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64572201	64572201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1207	170	441	2	ENST00000337652.1:c.1453C>T	p.Arg485Trp	p.R485W	ENST00000337652	NM_130803.2	485	Cgg/Tgg																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10610211	10610211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	776	628	0	ENST00000171111.5:c.499G>T	p.Val167Phe	p.V167F	ENST00000171111	NM_203500.1	167	Gtt/Ttt																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1207090	1207091	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0005024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	748	581	1	ENST00000326873.7:c.179dupA	p.Tyr60Ter	p.Y60*	ENST00000326873	NM_000455.4	60	tac/tAac																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47041201	47041202	+	frameshift_variant	Frame_Shift_Ins	INS	CC	CC	TAT			P-0005024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	376	325	0	ENST00000329236.7:c.1395_1396delinsTAT	p.His466IlefsTer3	p.H466Ifs*3	ENST00000329236	NM_001204466.1	465	acCCat/acTATat																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0000658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			74	193	96	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151875096	151875097	+	splice_acceptor_variant	Splice_Site	INS	-	-	T			P-0000658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	63	107	2	ENST00000262189.6:c.7443-2dupA		p.X2481_splice	ENST00000262189	NM_170606.2	2481																																														NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578213	7578214	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-	rs1131691030		P-0000658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	337	537	0	ENST00000269305.4:c.635_636del	p.Phe212SerfsTer3	p.F212Sfs*3	ENST00000269305	NM_001126112.2	212	tTT/t																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16049715	16049716	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0000658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			487	939	715	0	ENST00000268712.3:c.1056_1057delAA	p.Glu354ThrfsTer21	p.E354Tfs*21	ENST00000268712	NM_006311.3	352	caAAga/caga																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	376	409	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																													NEWRECORD																																		
FGF4	2249	MSKCC	GRCh37	11	69588123	69588123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	105	659	3	ENST00000168712.1:c.575G>A	p.Arg192Gln	p.R192Q	ENST00000168712	NM_002007.2	192	cGa/cAa																																													NEWRECORD																																		
FGF19	9965	MSKCC	GRCh37	11	69518482	69518482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	70	204	0	ENST00000294312.3:c.163C>T	p.Leu55Phe	p.L55F	ENST00000294312	NM_005117.2	55	Ctc/Ttc																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32911338	32911338	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	246	1058	0	ENST00000380152.3:c.2846A>G	p.Tyr949Cys	p.Y949C	ENST00000380152		949	tAt/tGt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579393	7579408	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGACAGAAGATGAC	AGGGACAGAAGATGAC	-			P-0009356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	168	424	0	ENST00000269305.4:c.279_294del	p.Ser94ProfsTer24	p.S94Pfs*24	ENST00000269305	NM_001126112.2	93	ctGTCATCTTCTGTCCCT/ct																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023269	27023292	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCGGCAGCAGCGATGGGGTGGG	TGGCGGCAGCAGCGATGGGGTGGG	C			P-0009356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	59	236	0	ENST00000324856.7:c.375_398delinsC	p.Gly127AlafsTer265	p.G127Afs*265	ENST00000324856	NM_006015.4	125	ggTGGCGGCAGCAGCGATGGGGTGGGg/ggCg																																													NEWRECORD																																		
PIK3R2	5296	MSKCC	GRCh37	19	18278049	18278049	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	73	346	0	ENST00000222254.8:c.1669G>T	p.Asp557Tyr	p.D557Y	ENST00000222254	NM_005027.3	557	Gac/Tac																																													NEWRECORD																																		
MCL1	4170	MSKCC	GRCh37	1	150549945	150549945	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	72	157	0	ENST00000369026.2:c.959A>G	p.His320Arg	p.H320R	ENST00000369026	NM_021960.4	320	cAt/cGt																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30729893	30729893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	48	222	0	ENST00000359013.4:c.1489C>A	p.Pro497Thr	p.P497T	ENST00000359013	NM_001024847.2	497	Cct/Act																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89259489	89259489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	160	516	0	ENST00000336596.2:c.633G>T	p.Met211Ile	p.M211I	ENST00000336596	NM_005233.5	211	atG/atT																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115919	8115920	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	53	189	0	ENST00000346208.3:c.1266dup	p.His423AlafsTer84	p.H423Afs*84	ENST00000346208		422	atg/atGg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	161	465	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	176	414	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0015020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	110	314	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0015020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	138	348	1	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29559780	29559780	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	145	288	0	ENST00000358273.4:c.3377A>G	p.Gln1126Arg	p.Q1126R	ENST00000358273	NM_001042492.2	1126	cAa/cGa																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1293439	1293439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	43	552	0	ENST00000310581.5:c.1562G>A	p.Arg521His	p.R521H	ENST00000310581	NM_198253.2	521	cGc/cAc																																													NEWRECORD																																		
DROSHA	29102	MSKCC	GRCh37	5	31410856	31410856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	215	486	0	ENST00000344624.3:c.3664G>A	p.Glu1222Lys	p.E1222K	ENST00000344624		1222	Gaa/Aaa																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67589214	67589215	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACA			P-0015020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	120	321	0	ENST00000274335.5:c.1202_1203insACA	p.Val401_Val402insGln	p.V401_V402insQ	ENST00000274335		401	gtg/gtACAg																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47039405	47039405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	48	321	0	ENST00000329236.7:c.797G>A	p.Arg266His	p.R266H	ENST00000329236	NM_001204466.1	266	cGc/cAc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005623-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			403	232	380	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0005623-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			446	455	546	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114912149	114912149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005623-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1427	475	776	2	ENST00000543371.1:c.1219C>T	p.Arg407Ter	p.R407*	ENST00000543371	NM_001198531.1	407	Cga/Tga																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266013	41266355	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTA	ATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTA	-			P-0005623-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			317	138	348	0	ENST00000349496.5:c.15_242-85del		p.X5_splice	ENST00000349496	NM_001904.3	5																																														NEWRECORD																																		
JUN	3725	MSKCC	GRCh37	1	59248320	59248321	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCTGC			P-0005623-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			94	64	81	0	ENST00000371222.2:c.418_422dup	p.Met142GlnfsTer8	p.M142Qfs*8	ENST00000371222	NM_002228.3	141	ggc/ggGCAGGc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	103	361	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0005479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	149	552	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131940507	131940507	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	132	418	0	ENST00000265335.6:c.2534A>T	p.Lys845Met	p.K845M	ENST00000265335		845	aAg/aTg																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48593558	48593558	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0005479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	62	226	0	ENST00000342988.3:c.1308+1G>A		p.X436_splice	ENST00000342988	NM_005359.5	436																																														NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48919252	48919253	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	137	353	0	ENST00000267163.4:c.418dup	p.Thr140AsnfsTer6	p.T140Nfs*6	ENST00000267163	NM_000321.2	139	-/A																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	80	153	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	81	301	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	152055756	152055756	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	22	232	1	ENST00000262189.6:c.166C>T	p.Arg56Ter	p.R56*	ENST00000262189	NM_170606.2	56	Cga/Tga																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108192065	108192065	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	141	330	0	ENST00000278616.4:c.6490G>C	p.Glu2164Gln	p.E2164Q	ENST00000278616	NM_000051.3	2164	Gag/Cag																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47127693	47127693	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	40	263	0	ENST00000409792.3:c.5389C>T	p.Gln1797Ter	p.Q1797*	ENST00000409792	NM_014159.6	1797	Cag/Tag																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11317160	11317160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	154	416	0	ENST00000361445.4:c.334C>T	p.Arg112Trp	p.R112W	ENST00000361445	NM_004958.3	112	Cgg/Tgg																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16256933	16256933	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	155	363	0	ENST00000375759.3:c.4198G>T	p.Glu1400Ter	p.E1400*	ENST00000375759	NM_015001.2	1400	Gaa/Taa																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16257290	16257290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	140	355	0	ENST00000375759.3:c.4555G>A	p.Glu1519Lys	p.E1519K	ENST00000375759	NM_015001.2	1519	Gag/Aag																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120469217	120469217	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	206	304	0	ENST00000256646.2:c.3910T>C	p.Phe1304Leu	p.F1304L	ENST00000256646	NM_024408.3	1304	Ttc/Ctc																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212251769	212251769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	45	252	0	ENST00000342788.4:c.3290C>T	p.Ala1097Val	p.A1097V	ENST00000342788	NM_005235.2	1097	gCt/gTt																																													NEWRECORD																																		
RAF1	5894	MSKCC	GRCh37	3	12626123	12626123	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	138	258	0	ENST00000251849.4:c.1837C>G	p.Leu613Val	p.L613V	ENST00000251849	NM_002880.3	613	Cta/Gta																																													NEWRECORD																																		
RAF1	5894	MSKCC	GRCh37	3	12632338	12632338	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	145	375	0	ENST00000251849.4:c.1329C>G	p.Phe443Leu	p.F443L	ENST00000251849	NM_002880.3	443	ttC/ttG																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47098670	47098670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	203	405	0	ENST00000409792.3:c.6604C>A	p.Pro2202Thr	p.P2202T	ENST00000409792	NM_014159.6	2202	Cct/Act																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52668771	52668771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	87	314	0	ENST00000394830.3:c.1148C>T	p.Ser383Leu	p.S383L	ENST00000394830	NM_018313.4	383	tCa/tTa																																													NEWRECORD																																		
MITF	4286	MSKCC	GRCh37	3	69988316	69988316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	136	205	0	ENST00000352241.4:c.650G>A	p.Arg217Gln	p.R217Q	ENST00000352241	NM_198159.2	217	cGa/cAa																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71021828	71021828	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	31	214	0	ENST00000318789.4:c.1531-1G>C		p.X511_splice	ENST00000318789	NM_032682.5	511																																														NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142168330	142168330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	30	243	0	ENST00000350721.4:c.7876G>A	p.Glu2626Lys	p.E2626K	ENST00000350721	NM_001184.3	2626	Gaa/Aaa																																													NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189612113	189612113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	150	330	0	ENST00000264731.3:c.1865G>T	p.Ser622Ile	p.S622I	ENST00000264731	NM_003722.4	622	aGt/aTt																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153253817	153253817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	32	254	0	ENST00000281708.4:c.916C>A	p.Gln306Lys	p.Q306K	ENST00000281708	NM_033632.3	306	Cag/Aag																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187541712	187541712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	147	345	0	ENST00000441802.2:c.6028G>A	p.Glu2010Lys	p.E2010K	ENST00000441802	NM_005245.3	2010	Gag/Aag																																													NEWRECORD																																		
CSF1R	1436	MSKCC	GRCh37	5	149450135	149450135	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	145	385	0	ENST00000286301.3:c.1083-1G>A		p.X361_splice	ENST00000286301	NM_005211.3	361																																														NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149497266	149497266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	157	428	0	ENST00000261799.4:c.3052G>T	p.Asp1018Tyr	p.D1018Y	ENST00000261799	NM_002609.3	1018	Gac/Tac																																													NEWRECORD																																		
FGFR4	2264	MSKCC	GRCh37	5	176522416	176522416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	136	311	0	ENST00000292408.4:c.1605C>A	p.Asn535Lys	p.N535K	ENST00000292408	NM_213647.1	535	aaC/aaA																																													NEWRECORD																																		
HIST1H3B	8358	MSKCC	GRCh37	6	26032031	26032031	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1240	116	657	0	ENST00000244661.2:c.258G>C	p.Gln86His	p.Q86H	ENST00000244661	NM_003537.3	86	caG/caC																																													NEWRECORD																																		
HIST1H1C	3006	MSKCC	GRCh37	6	26056021	26056021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	47	155	0	ENST00000343677.2:c.636G>C	p.Lys212Asn	p.K212N	ENST00000343677	NM_005319.3	212	aaG/aaC																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32185020	32185020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	56	363	0	ENST00000375023.3:c.1648G>A	p.Glu550Lys	p.E550K	ENST00000375023	NM_004557.3	550	Gag/Aag																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	150004877	150004877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	136	318	0	ENST00000253339.5:c.1348G>A	p.Glu450Lys	p.E450K	ENST00000253339		450	Gaa/Aaa																																													NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90947841	90947841	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	27	218	0	ENST00000265433.3:c.2235-1G>A		p.X745_splice	ENST00000265433	NM_002485.4	745																																														NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145739635	145739635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	91	421	0	ENST00000428558.2:c.1816G>A	p.Glu606Lys	p.E606K	ENST00000428558	NM_004260.3	606	Gag/Aag																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28891647	28891647	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	191	446	0	ENST00000282397.4:c.3374C>G	p.Ser1125Cys	p.S1125C	ENST00000282397	NM_002019.4	1125	tCt/tGt																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41256945	41256945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	41	266	0	ENST00000357654.3:c.241C>G	p.Gln81Glu	p.Q81E	ENST00000357654	NM_007294.3	81	Caa/Gaa																																													NEWRECORD																																		
SPOP	8405	MSKCC	GRCh37	17	47696716	47696716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	134	312	0	ENST00000347630.2:c.232G>A	p.Glu78Lys	p.E78K	ENST00000347630	NM_001007230.1	78	Gaa/Aaa																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7117320	7117320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	60	407	0	ENST00000302850.5:c.3896C>T	p.Pro1299Leu	p.P1299L	ENST00000302850	NM_000208.2	1299	cCa/cTa																																													NEWRECORD																																		
ERCC2	2068	MSKCC	GRCh37	19	45872221	45872221	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	82	345	0	ENST00000391945.4:c.213C>G	p.Ile71Met	p.I71M	ENST00000391945	NM_000400.3	71	atC/atG																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31016191	31016191	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	70	335	0	ENST00000375687.4:c.437C>A	p.Ser146Tyr	p.S146Y	ENST00000375687	NM_015338.5	146	tCc/tAc																																													NEWRECORD																																		
TOP1	7150	MSKCC	GRCh37	20	39750725	39750725	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	106	163	0	ENST00000361337.2:c.2125G>C	p.Glu709Gln	p.E709Q	ENST00000361337	NM_003286.2	709	Gag/Cag																																													NEWRECORD																																		
ERG	2078	MSKCC	GRCh37	21	39772526	39772526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	44	307	0	ENST00000288319.7:c.715G>A	p.Glu239Lys	p.E239K	ENST00000288319	NM_182918.3	239	Gaa/Aaa																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39922160	39922160	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1125	70	564	0	ENST00000378444.4:c.4012G>C	p.Glu1338Gln	p.E1338Q	ENST00000378444	NM_001123385.1	1338	Gaa/Caa																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47045016	47045016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	169	441	0	ENST00000329236.7:c.2108C>T	p.Ser703Leu	p.S703L	ENST00000329236	NM_001204466.1	703	tCa/tTa																																													NEWRECORD																																		
GATA1	2623	MSKCC	GRCh37	X	48650729	48650729	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	242	466	0	ENST00000376670.3:c.599-1G>C		p.X200_splice	ENST00000376670	NM_002049.3	200																																														NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53239915	53239915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1069	98	420	0	ENST00000375401.3:c.1526C>T	p.Ser509Leu	p.S509L	ENST00000375401	NM_004187.3	509	tCa/tTa																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70352372	70352372	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	190	479	1	ENST00000374080.3:c.4399C>T	p.Arg1467Ter	p.R1467*	ENST00000374080		1467	Cga/Tga																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225368488	225368489	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	101	227	0	ENST00000264414.4:c.1257dup	p.Arg420Ter	p.R420*	ENST00000264414	NM_003590.4	419	-/T																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68862100	68862100	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	218	356	0	ENST00000261769.5:c.2190del	p.Leu731PhefsTer39	p.L731Ffs*39	ENST00000261769	NM_004360.3	730	Ttt/tt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	125	359	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
RAD21	5885	MSKCC	GRCh37	8	117868412	117868412	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1058	116	422	0	ENST00000297338.2:c.930T>G	p.Asp310Glu	p.D310E	ENST00000297338	NM_006265.2	310	gaT/gaG																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70356400	70356401	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	88	527	1	ENST00000374080.3:c.5301dup	p.Lys1768GlnfsTer3	p.K1768Qfs*3	ENST00000374080		1765	-/C																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971124	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	82	304	0	ENST00000304494.5:c.234del	p.Thr79ProfsTer67	p.T79Pfs*67	ENST00000304494	NM_000077.4	78	ctC/ct																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579537	7579537	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	97	492	0	ENST00000269305.4:c.150del	p.Ile50MetfsTer73	p.I50Mfs*73	ENST00000269305	NM_001126112.2	50	atT/at																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0006743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	124	463	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578440	7578440	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs879254249		P-0006743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	147	409	0	ENST00000269305.4:c.490A>G	p.Lys164Glu	p.K164E	ENST00000269305	NM_001126112.2	164	Aag/Gag																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11145615	11145615	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	80	371	0	ENST00000344626.4:c.3977A>G	p.Glu1326Gly	p.E1326G	ENST00000344626	NM_003072.3	1326	gAg/gGg																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53224178	53224179	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	89	550	0	ENST00000375401.3:c.3372_3373insA	p.Leu1125IlefsTer5	p.L1125Ifs*5	ENST00000375401	NM_004187.3	1124	-/A																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70120149	70120149	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	92	180	0	ENST00000245479.2:c.1151del	p.Thr384SerfsTer2	p.T384Sfs*2	ENST00000245479	NM_000346.3	384	aCg/ag																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76874405	76874407	+	frameshift_variant	Frame_Shift_Del	DEL	TGG	TGG	AT			P-0006743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	69	616	0	ENST00000373344.5:c.5315_5317delinsAT	p.Ser1772TyrfsTer10	p.S1772Yfs*10	ENST00000373344	NM_000489.3	1772	tCCAtt/tATtt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	274	652	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1099	254	887	0	ENST00000269305.4:c.842A>G	p.Asp281Gly	p.D281G	ENST00000269305	NM_001126112.2	281	gAc/gGc																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29462643	29462643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1337	237	1089	2	ENST00000389048.3:c.2258G>A	p.Arg753Gln	p.R753Q	ENST00000389048	NM_004304.4	753	cGg/cAg																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38947467	38947467	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1397	82	844	1	ENST00000357387.3:c.4213C>T	p.Arg1405Ter	p.R1405*	ENST00000357387	NM_152756.3	1405	Cga/Tga																																													NEWRECORD																																		
RIT1	6016	MSKCC	GRCh37	1	155874272	155874272	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1163	86	644	0	ENST00000368323.3:c.259G>C	p.Asp87His	p.D87H	ENST00000368323	NM_006912.5	87	Gac/Cac																																													NEWRECORD																																		
NKX2-1	7080	MSKCC	GRCh37	14	36988403	36988403	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	68	276	0	ENST00000354822.5:c.250C>G	p.Gln84Glu	p.Q84E	ENST00000354822	NM_001079668.2	84	Cag/Gag																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48593416	48593417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAAT			P-0012821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	141	673	0	ENST00000342988.3:c.1169_1172dup	p.Cys391Ter	p.C391*	ENST00000342988	NM_005359.5	389	-/GAAT																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974775	21974775	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	151	381	0	ENST00000304494.5:c.52del	p.Thr18ArgfsTer8	p.T18Rfs*8	ENST00000304494	NM_000077.4	18	Acg/cg																																													NEWRECORD																																		
NKX2-1	7080	MSKCC	GRCh37	14	36988381	36988402	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTGCCCCACGGCGTGCTGCT	TGGTGCCCCACGGCGTGCTGCT	-			P-0012821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	67	220	0	ENST00000354822.5:c.251_272del	p.Gln84ProfsTer10	p.Q84Pfs*10	ENST00000354822	NM_001079668.2	84	cAGCAGCACGCCGTGGGGCACCAc/cc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0007584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	96	312	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	189	265	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	142	229	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																													NEWRECORD																																		
SRSF2	6427	MSKCC	GRCh37	17	74733058	74733058	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	175	351	2	ENST00000359995.5:c.185T>G	p.Phe62Cys	p.F62C	ENST00000359995	NM_001195427.1	62	tTt/tGt																																													NEWRECORD																																		
SRC	6714	MSKCC	GRCh37	20	36012692	36012692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	166	34	0	ENST00000358208.4:c.136G>A	p.Gly46Ser	p.G46S	ENST00000358208		46	Ggc/Agc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	81	520	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0012921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	93	609	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48593473	48593474	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	82	535	1	ENST00000342988.3:c.1225dup	p.Val409GlyfsTer20	p.V409Gfs*20	ENST00000342988	NM_005359.5	408	-/G																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	145	295	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	19	214	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175600	112175600	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	426	564	0	ENST00000257430.4:c.4312delA	p.Thr1438HisfsTer35	p.T1438Hfs*35	ENST00000257430	NM_000038.5	1437	Aaa/aa																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	50	397	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	38	350	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0006581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	68	446	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs587782289		P-0006581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	94	431	0	ENST00000269305.4:c.706T>A	p.Tyr236Asn	p.Y236N	ENST00000269305	NM_001126112.2	236	Tac/Aac																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936076	178936076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	57	172	1	ENST00000263967.3:c.1618C>T	p.Leu540Phe	p.L540F	ENST00000263967	NM_006218.2	540	Ctc/Ttc																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106509735	106509735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	178	392	0	ENST00000359195.3:c.1729C>A	p.His577Asn	p.H577N	ENST00000359195	NM_002649.2	577	Cat/Aat																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52643942	52643943	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	86	242	0	ENST00000394830.3:c.1953dup	p.Ser652IlefsTer13	p.S652Ifs*13	ENST00000394830	NM_018313.4	651	-/A																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002985-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			584	165	588	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0002985-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			562	160	741	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30729932	30729932	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002985-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			425	92	386	0	ENST00000359013.4:c.1528G>T	p.Glu510Ter	p.E510*	ENST00000359013	NM_001024847.2	510	Gaa/Taa																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27057809	27057810	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002985-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			538	161	807	1	ENST00000324856.7:c.1518dup	p.Gln507SerfsTer116	p.Q507Sfs*116	ENST00000324856	NM_006015.4	506	tct/tcTt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0014842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	52	280	1	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8097760	8097760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	55	732	0	ENST00000346208.3:c.142G>A	p.Asp48Asn	p.D48N	ENST00000346208		48	Gat/Aat																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133202314	133202314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	40	614	0	ENST00000320574.5:c.6574del	p.Ala2192ArgfsTer10	p.A2192Rfs*10	ENST00000320574	NM_006231.2	2192	Gcg/cg																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68835732	68835733	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	59	661	0	ENST00000261769.5:c.326dup	p.Phe110ValfsTer58	p.F110Vfs*58	ENST00000261769	NM_004360.3	108	aga/agAa																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36206838	36206838	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	87	447	0	ENST00000300305.3:c.674del	p.Leu225ProfsTer12	p.L225Pfs*12	ENST00000300305		225	cTc/cc																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47125381	47125382	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0014842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	26	382	0	ENST00000409792.3:c.5888_5889del	p.Lys1963ArgfsTer12	p.K1963Rfs*12	ENST00000409792	NM_014159.6	1963	aAA/a																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	99	526	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	78	487	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	95	614	0	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061169	38061169	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	19	230	0	ENST00000250448.2:c.820del	p.Ala274ProfsTer47	p.A274Pfs*47	ENST00000250448	NM_004496.3	274	Gcc/cc																																													NEWRECORD																																		
MYC	4609	MSKCC	GRCh37	8	128752960	128752960	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1130	74	555	0	ENST00000377970.2:c.1121A>G	p.His374Arg	p.H374R	ENST00000377970	NM_002467.4	374	cAc/cGc																																													NEWRECORD																																		
RIT1	6016	MSKCC	GRCh37	1	155874163	155874163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1328	85	703	0	ENST00000368323.3:c.368G>A	p.Arg123His	p.R123H	ENST00000368323	NM_006912.5	123	cGt/cAt																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153245399	153245399	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	90	603	0	ENST00000281708.4:c.1792A>C	p.Asn598His	p.N598H	ENST00000281708	NM_033632.3	598	Aat/Cat																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145742547	145742547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	62	377	0	ENST00000428558.2:c.241del	p.His81IlefsTer2	p.H81Ifs*2	ENST00000428558	NM_004260.3	81	Cat/at																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44732910	44732910	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	79	460	0	ENST00000377967.4:c.117del	p.Ser40AlafsTer2	p.S40Afs*2	ENST00000377967	NM_021140.2	38	tCc/tc																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157099286	157099287	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1234	153	725	0	ENST00000346085.5:c.228dup	p.Ala77ArgfsTer155	p.A77Rfs*155	ENST00000346085	NM_020732.3	75	gcc/gCcc																																													NEWRECORD																																		
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1082	141	661	1	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49434889	49434889	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	96	490	1	ENST00000301067.7:c.6664C>T	p.Gln2222Ter	p.Q2222*	ENST00000301067	NM_003482.3	2222	Cag/Tag																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67671654	67671655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	85	495	1	ENST00000264010.4:c.2070dup	p.Glu691ArgfsTer5	p.E691Rfs*5	ENST00000264010	NM_006565.3	688	gta/gtAa																																													NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31395665	31395665	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	98	594	0	ENST00000328111.2:c.2518C>T	p.Arg840Ter	p.R840*	ENST00000328111	NM_006892.3	840	Cga/Tga																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	213403254	213403254	+	frameshift_variant,start_lost	Frame_Shift_Del	DEL	T	T	-			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	47	643	0	ENST00000342788.4:c.1delA	p.Met1?	p.M1?	ENST00000342788	NM_005235.2	1	Atg/tg																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16199481	16199481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	115	578	0	ENST00000375759.3:c.254C>T	p.Pro85Leu	p.P85L	ENST00000375759	NM_015001.2	85	cCg/cTg																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16260200	16260200	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	48	246	0	ENST00000375759.3:c.7465A>G	p.Ile2489Val	p.I2489V	ENST00000375759	NM_015001.2	2489	Atc/Gtc																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29445447	29445447	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	106	700	0	ENST00000389048.3:c.3386A>C	p.Glu1129Ala	p.E1129A	ENST00000389048	NM_004304.4	1129	gAg/gCg																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29940456	29940456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	66	478	0	ENST00000389048.3:c.775C>T	p.Arg259Cys	p.R259C	ENST00000389048	NM_004304.4	259	Cgc/Tgc																																													NEWRECORD																																		
INPP4A	3631	MSKCC	GRCh37	2	99172158	99172158	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	120	692	0	ENST00000074304.5:c.1724A>G	p.Asn575Ser	p.N575S	ENST00000074304	NM_001134224.1	575	aAc/aGc																																													NEWRECORD																																		
INPP4A	3631	MSKCC	GRCh37	2	99182499	99182499	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			938	91	585	0	ENST00000074304.5:c.2302T>C	p.Phe768Leu	p.F768L	ENST00000074304	NM_001134224.1	768	Ttt/Ctt																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56183253	56183253	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	63	400	0	ENST00000399503.3:c.4163A>C	p.Asp1388Ala	p.D1388A	ENST00000399503	NM_005921.1	1388	gAt/gCt																																													NEWRECORD																																		
HLA-A	3105	MSKCC	GRCh37	6	29911164	29911164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	44	270	0	ENST00000376809.5:c.463C>T	p.Arg155Cys	p.R155C	ENST00000376809	NM_002116.7	155	Cgc/Tgc																																													NEWRECORD																																		
TNFAIP3	7128	MSKCC	GRCh37	6	138196045	138196045	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	87	455	0	ENST00000237289.4:c.359T>C	p.Leu120Ser	p.L120S	ENST00000237289	NM_001270507.1	120	tTg/tCg																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145739328	145739328	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	98	481	0	ENST00000428558.2:c.2042A>G	p.Asp681Gly	p.D681G	ENST00000428558	NM_004260.3	681	gAc/gGc																																													NEWRECORD																																		
TGFBR1	7046	MSKCC	GRCh37	9	101904987	101904987	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	54	330	0	ENST00000374994.4:c.973+2T>C		p.X325_splice	ENST00000374994	NM_004612.2	325																																														NEWRECORD																																		
PGR	5241	MSKCC	GRCh37	11	100998747	100998747	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11571148		P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	177	862	2	ENST00000325455.5:c.1055C>T	p.Pro352Leu	p.P352L	ENST00000325455	NM_001202474.3	352	cCg/cTg																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73345041	73345041	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	48	385	0	ENST00000377767.4:c.1755+1G>C		p.X585_splice	ENST00000377767	NM_014953.3	585																																														NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95566229	95566229	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	108	588	0	ENST00000343455.3:c.4094T>C	p.Leu1365Pro	p.L1365P	ENST00000343455	NM_177438.2	1365	cTa/cCa																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3820570	3820570	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	53	305	0	ENST00000262367.5:c.2880+1G>A		p.X960_splice	ENST00000262367	NM_004380.2	960																																														NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3824601	3824601	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1091	108	726	0	ENST00000262367.5:c.2252T>C	p.Val751Ala	p.V751A	ENST00000262367	NM_004380.2	751	gTc/gCc																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645064	67645064	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	117	703	0	ENST00000264010.4:c.329T>C	p.Ile110Thr	p.I110T	ENST00000264010	NM_006565.3	110	aTa/aCa																																													NEWRECORD																																		
AURKB	9212	MSKCC	GRCh37	17	8108698	8108698	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	104	621	0	ENST00000585124.1:c.697A>G	p.Met233Val	p.M233V	ENST00000585124	NM_004217.3	233	Atg/Gtg																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56440675	56440675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1327	178	874	0	ENST00000407977.2:c.543G>T	p.Lys181Asn	p.K181N	ENST00000407977		181	aaG/aaT																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10252837	10252837	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	164	410	0	ENST00000340748.4:c.3128A>G	p.Tyr1043Cys	p.Y1043C	ENST00000340748		1043	tAc/tGc																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41564603	41564603	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	97	611	0	ENST00000263253.7:c.4025G>T	p.Arg1342Met	p.R1342M	ENST00000263253	NM_001429.3	1342	aGg/aTg																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70360612	70360617	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	43	615	1	ENST00000374080.3:c.6183_6188del	p.Gln2075_Gln2076del	p.Q2075_Q2076del	ENST00000374080		2058	CAGCAA/-																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89349355	89349356	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2157	248	1382	0	ENST00000301030.4:c.3594dupA	p.Glu1199ArgfsTer5	p.E1199Rfs*5	ENST00000301030	NM_001256183.1	1198	-/A																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3900661	3900661	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	79	418	2	ENST00000262367.5:c.435delC	p.Ala146LeufsTer6	p.A146Lfs*6	ENST00000262367	NM_004380.2	145	ccC/cc																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31019143	31019144	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1158	105	820	0	ENST00000375687.4:c.742dup	p.Glu248GlyfsTer6	p.E248Gfs*6	ENST00000375687	NM_015338.5	246	-/G																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49432686	49432687	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	71	569	0	ENST00000301067.7:c.8452_8453del	p.Trp2818AlafsTer26	p.W2818Afs*26	ENST00000301067	NM_003482.3	2818	TGg/g																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98224248	98224248	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	71	490	0	ENST00000331920.6:c.2593del	p.Thr865ProfsTer38	p.T865Pfs*38	ENST00000331920	NM_000264.3	865	Acc/cc																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39933594	39933594	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	72	607	1	ENST00000378444.4:c.1005del	p.Ser336ArgfsTer42	p.S336Rfs*42	ENST00000378444	NM_001123385.1	335	ccC/cc																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63533517	63533517	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	89	643	0	ENST00000307078.5:c.1637del	p.Gly546AlafsTer143	p.G546Afs*143	ENST00000307078	NM_004655.3	546	gGc/gc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002390-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			829	549	305	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0009829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	15	384	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0009829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	70	458	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151845697	151845697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	50	367	0	ENST00000262189.6:c.13315G>T	p.Val4439Phe	p.V4439F	ENST00000262189	NM_170606.2	4439	Gtc/Ttc																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55136887	55136888	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGCT			P-0009829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	17	530	0	ENST00000257290.5:c.1211_1214dup	p.Tyr405Ter	p.Y405*	ENST00000257290	NM_006206.4	403	-/AGCT																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0010209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	248	538	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15272024	15272024	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	149	220	0	ENST00000263388.2:c.6415C>T	p.Gln2139Ter	p.Q2139*	ENST00000263388	NM_000435.2	2139	Cag/Tag																																													NEWRECORD																																		
HIST1H1C	3006	MSKCC	GRCh37	6	26056572	26056573	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	40	150	0	ENST00000343677.2:c.84dup	p.Gly29TrpfsTer6	p.G29Wfs*6	ENST00000343677	NM_005319.3	28	-/T																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0001104-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			450	245	600	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0001104-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	246	470	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
ETV6	2120	MSKCC	GRCh37	12	12038912	12038912	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001104-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			884	282	567	0	ENST00000396373.4:c.1205A>G	p.Tyr402Cys	p.Y402C	ENST00000396373	NM_001987.4	402	tAc/tGc																																													NEWRECORD																																		
PIK3CD	5293	MSKCC	GRCh37	1	9782654	9782654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001104-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	401	488	0	ENST00000377346.4:c.2416C>A	p.Leu806Met	p.L806M	ENST00000377346	NM_005026.3	806	Ctg/Atg																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29917797	29917797	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748854412		P-0001104-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			938	213	537	0	ENST00000389048.3:c.871C>T	p.Arg291Cys	p.R291C	ENST00000389048	NM_004304.4	291	Cgc/Tgc																																													NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1808647	1808647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001104-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			733	218	558	0	ENST00000260795.2:c.2260G>A	p.Val754Met	p.V754M	ENST00000260795		754	Gtg/Atg																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66213909	66213909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001104-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			772	260	635	0	ENST00000273854.3:c.2521C>T	p.Pro841Ser	p.P841S	ENST00000273854	NM_004439.5	841	Cca/Tca																																													NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50468029	50468029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001104-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			456	122	296	1	ENST00000331340.3:c.1264G>A	p.Ala422Thr	p.A422T	ENST00000331340	NM_006060.4	422	Gcg/Acg																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8504378	8504378	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001104-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	187	370	0	ENST00000356435.5:c.1705T>A	p.Ser569Thr	p.S569T	ENST00000356435		569	Tca/Aca																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46231337	46231337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001104-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			617	209	425	0	ENST00000334344.6:c.1177G>A	p.Glu393Lys	p.E393K	ENST00000334344	NM_152641.2	393	Gaa/Aaa																																													NEWRECORD																																		
HNF1A	6927	MSKCC	GRCh37	12	121432110	121432110	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001104-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			677	215	468	0	ENST00000257555.6:c.857A>T	p.Tyr286Phe	p.Y286F	ENST00000257555		286	tAc/tTc																																													NEWRECORD																																		
TRAF7	84231	MSKCC	GRCh37	16	2218120	2218120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001104-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1018	352	678	0	ENST00000326181.6:c.182C>T	p.Ser61Phe	p.S61F	ENST00000326181	NM_032271.2	61	tCc/tTc																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9857029	9857029	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001104-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			935	279	693	0	ENST00000330684.3:c.4372C>G	p.Pro1458Ala	p.P1458A	ENST00000330684	NM_001134407.1	1458	Cct/Gct																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56439988	56439993	+	frameshift_variant	Frame_Shift_Ins	INS	GGATCC	GGATCC	TCATAATCTG			P-0001104-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	97	450	1	ENST00000407977.2:c.599_604delinsCAGATTATGA	p.Trp200SerfsTer60	p.W200Sfs*60	ENST00000407977		200	tGGATCCta/tCAGATTATGAta																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1293	350	945	2	ENST00000380152.3:c.5351delA	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	219	528	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	125	442	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	162	576	0	ENST00000257430.4:c.4393_4394dupAG	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	330	678	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	155	628	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																													NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	212	482	5	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	140	480	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	175	984	2	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																													NEWRECORD																																		
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	149	450	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	14	296	2	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67457264	67457264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	106	620	1	ENST00000327367.4:c.238C>T	p.Arg80Trp	p.R80W	ENST00000327367	NM_005902.3	80	Cgg/Tgg																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	255	1136	0	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	38	328	4	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	317	1108	3	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																													NEWRECORD																																		
TRAF2	7186	MSKCC	GRCh37	9	139794917	139794917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	279	915	2	ENST00000247668.2:c.311C>T	p.Pro104Leu	p.P104L	ENST00000247668	NM_021138.3	104	cCg/cTg																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	248	931	3	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																													NEWRECORD																																		
FGFR2	2263	MSKCC	GRCh37	10	123298226	123298226	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	121	450	2	ENST00000358487.5:c.628C>T	p.Arg210Ter	p.R210*	ENST00000358487	NM_000141.4	210	Cga/Tga																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11190714	11190714	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199646470		P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	42	650	0	ENST00000361445.4:c.5485A>G	p.Thr1829Ala	p.T1829A	ENST00000361445	NM_004958.3	1829	Acc/Gcc																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15298120	15298120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	164	694	1	ENST00000263388.2:c.1636G>A	p.Val546Met	p.V546M	ENST00000263388	NM_000435.2	546	Gtg/Atg																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89836985	89836985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	85	596	2	ENST00000389301.3:c.2209G>A	p.Ala737Thr	p.A737T	ENST00000389301	NM_000135.2	737	Gct/Act																																													NEWRECORD																																		
TCF3	6929	MSKCC	GRCh37	19	1619428	1619428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	68	774	0	ENST00000344749.5:c.1213C>T	p.Arg405Cys	p.R405C	ENST00000344749	NM_001136139.2	405	Cgc/Tgc																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78858817	78858817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	107	595	0	ENST00000306801.3:c.1852G>A	p.Ala618Thr	p.A618T	ENST00000306801	NM_020761.2	618	Gca/Aca																																													NEWRECORD																																		
CDC73	79577	MSKCC	GRCh37	1	193107231	193107231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	189	477	0	ENST00000367435.3:c.440G>A	p.Arg147His	p.R147H	ENST00000367435	NM_024529.4	147	cGc/cAc																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101624	27101624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	164	601	4	ENST00000324856.7:c.4906C>T	p.Arg1636Trp	p.R1636W	ENST00000324856	NM_006015.4	1636	Cgg/Tgg																																													NEWRECORD																																		
PIK3R3	8503	MSKCC	GRCh37	1	46511647	46511647	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	213	638	0	ENST00000262741.5:c.1130A>G	p.Asp377Gly	p.D377G	ENST00000262741	NM_003629.3	377	gAt/gGt																																													NEWRECORD																																		
RAD54L	8438	MSKCC	GRCh37	1	46739871	46739871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	118	672	0	ENST00000371975.4:c.1672C>T	p.Arg558Cys	p.R558C	ENST00000371975	NM_003579.3	558	Cgc/Tgc																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47630442	47630442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	198	592	1	ENST00000233146.2:c.112G>A	p.Asp38Asn	p.D38N	ENST00000233146	NM_000251.2	38	Gac/Aac																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47672702	47672702	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	230	656	0	ENST00000233146.2:c.1292T>A	p.Leu431Ter	p.L431*	ENST00000233146	NM_000251.2	431	tTa/tAa																																													NEWRECORD																																		
INPP4A	3631	MSKCC	GRCh37	2	99179952	99179952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	219	800	0	ENST00000074304.5:c.1895C>T	p.Pro632Leu	p.P632L	ENST00000074304	NM_001134224.1	632	cCg/cTg																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227662916	227662916	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	244	802	0	ENST00000305123.5:c.539T>C	p.Ile180Thr	p.I180T	ENST00000305123	NM_005544.2	180	aTt/aCt																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138431133	138431133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	209	513	0	ENST00000289153.2:c.1316C>T	p.Ala439Val	p.A439V	ENST00000289153	NM_006219.2	439	gCg/gTg																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55124955	55124955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	249	906	1	ENST00000257290.5:c.20C>T	p.Ala7Val	p.A7V	ENST00000257290	NM_006206.4	7	gCg/gTg																																													NEWRECORD																																		
SDHA	6389	MSKCC	GRCh37	5	224547	224547	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	61	478	0	ENST00000264932.6:c.223C>T	p.Arg75Ter	p.R75*	ENST00000264932	NM_004168.2	75	Cga/Tga																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38955712	38955712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	217	638	1	ENST00000357387.3:c.2594G>A	p.Arg865His	p.R865H	ENST00000357387	NM_152756.3	865	cGt/cAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112179179	112179179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199688874		P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	155	494	0	ENST00000257430.4:c.7888G>A	p.Val2630Ile	p.V2630I	ENST00000257430	NM_000038.5	2630	Gtt/Att																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176722090	176722090	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150977055		P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	145	424	1	ENST00000439151.2:c.7721C>T	p.Pro2574Leu	p.P2574L	ENST00000439151	NM_022455.4	2574	cCg/cTg																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157527698	157527698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	207	574	0	ENST00000346085.5:c.5423G>A	p.Arg1808His	p.R1808H	ENST00000346085	NM_020732.3	1808	cGt/cAt																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8341820	8341820	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	93	686	0	ENST00000356435.5:c.4820A>G	p.Asp1607Gly	p.D1607G	ENST00000356435		1607	gAt/gGt																																													NEWRECORD																																		
GNAQ	2776	MSKCC	GRCh37	9	80412544	80412544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	223	574	1	ENST00000286548.4:c.497G>A	p.Arg166His	p.R166H	ENST00000286548	NM_002072.3	166	cGc/cAc																																													NEWRECORD																																		
FANCC	2176	MSKCC	GRCh37	9	97873912	97873912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	133	547	0	ENST00000289081.3:c.1162G>A	p.Gly388Arg	p.G388R	ENST00000289081	NM_000136.2	388	Gga/Aga																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133759526	133759526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	174	840	0	ENST00000318560.5:c.1849C>T	p.Arg617Cys	p.R617C	ENST00000318560	NM_005157.4	617	Cgc/Tgc																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133759706	133759706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	52	336	1	ENST00000318560.5:c.2029G>A	p.Gly677Arg	p.G677R	ENST00000318560	NM_005157.4	677	Ggg/Agg																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114917814	114917814	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751365426		P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	217	787	1	ENST00000543371.1:c.1304C>T	p.Pro435Leu	p.P435L	ENST00000543371	NM_001198531.1	435	cCg/cTg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49431810	49431810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	79	430	1	ENST00000301067.7:c.9329G>A	p.Arg3110His	p.R3110H	ENST00000301067	NM_003482.3	3110	cGc/cAc																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	49030387	49030387	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373601944		P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	171	499	0	ENST00000267163.4:c.1862G>A	p.Arg621His	p.R621H	ENST00000267163	NM_000321.2	621	cGt/cAt																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2131647	2131647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	188	816	2	ENST00000219476.3:c.3662C>T	p.Ser1221Leu	p.S1221L	ENST00000219476	NM_000548.3	1221	tCg/tTg																																													NEWRECORD																																		
PRKAR1A	5573	MSKCC	GRCh37	17	66519008	66519008	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	185	691	0	ENST00000358598.2:c.289C>T	p.Arg97Ter	p.R97*	ENST00000358598	NM_212471.2	97	Cga/Tga																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1207168	1207168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	201	668	0	ENST00000326873.7:c.256C>T	p.Arg86Ter	p.R86*	ENST00000326873	NM_000455.4	86	Cga/Tga																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42794874	42794874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	24	433	2	ENST00000575354.2:c.1954G>A	p.Ala652Thr	p.A652T	ENST00000575354	NM_015125.3	652	Gcc/Acc																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50919695	50919695	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	187	867	1	ENST00000440232.2:c.2863C>T	p.Gln955Ter	p.Q955*	ENST00000440232	NM_002691.3	955	Cag/Tag																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41818358	41818358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			29	30	56	0	ENST00000373198.4:c.16G>A	p.Ala6Thr	p.A6T	ENST00000373198	NM_133170.3	6	Gcg/Acg																																													NEWRECORD																																		
ICOSLG	23308	MSKCC	GRCh37	21	45655428	45655428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	110	440	1	ENST00000407780.3:c.424G>A	p.Val142Ile	p.V142I	ENST00000407780	NM_001283052.1	142	Gtc/Atc																																													NEWRECORD																																		
CRLF2	64109	MSKCC	GRCh37	X	1321280	1321280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	89	378	1	ENST00000381566.1:c.475G>A	p.Glu159Lys	p.E159K	ENST00000381566		159	Gag/Aag																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66942786	66942786	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs9332971		P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	234	951	3	ENST00000374690.3:c.2567G>A	p.Arg856His	p.R856H	ENST00000374690	NM_000044.3	856	cGc/cAc																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27057666	27057666	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	122	904	0	ENST00000324856.7:c.1377del	p.Ser460AlafsTer159	p.S460Afs*159	ENST00000324856	NM_006015.4	458	ggC/gg																																													NEWRECORD																																		
MAP2K2	5605	MSKCC	GRCh37	19	4099311	4099312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	131	781	0	ENST00000262948.5:c.806dup	p.Pro270AlafsTer43	p.P270Afs*43	ENST00000262948	NM_030662.3	269	ccg/ccCg																																													NEWRECORD																																		
ICOSLG	23308	MSKCC	GRCh37	21	45656840	45656840	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	53	502	0	ENST00000407780.3:c.316del	p.Gln106ArgfsTer11	p.Q106Rfs*11	ENST00000407780	NM_001283052.1	106	Cag/ag																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106157385	106157385	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	112	446	0	ENST00000380013.4:c.2290del	p.Gln764LysfsTer49	p.Q764Kfs*49	ENST00000380013	NM_001127208.2	762	caC/ca																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37646922	37646922	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	229	798	2	ENST00000447079.4:c.2048del	p.Pro683GlnfsTer70	p.P683Qfs*70	ENST00000447079	NM_015083.1	682	Ccc/cc																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56168478	56168479	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	181	320	0	ENST00000399503.3:c.1436_1437del	p.Cys479Ter	p.C479*	ENST00000399503	NM_005921.1	478	gaGTgt/gagt																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76938088	76938089	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	158	639	0	ENST00000373344.5:c.2658_2659dup	p.Thr887ArgfsTer19	p.T887Rfs*19	ENST00000373344	NM_000489.3	887	act/aGAct																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135782131	135782131	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	467	708	0	ENST00000298552.3:c.1425del	p.Asp476IlefsTer56	p.D476Ifs*56	ENST00000298552	NM_001162426.1	475	aaA/aa																																													NEWRECORD																																		
TCF3	6929	MSKCC	GRCh37	19	1625696	1625696	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	226	890	0	ENST00000344749.5:c.378del	p.Ser127GlnfsTer17	p.S127Qfs*17	ENST00000344749	NM_001136139.2	126	ctG/ct																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002487-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			358	167	368	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120458424	120458424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002487-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	79	190	0	ENST00000256646.2:c.6921C>A	p.Phe2307Leu	p.F2307L	ENST00000256646	NM_024408.3	2307	ttC/ttA																																													NEWRECORD																																		
PRDM1	639	MSKCC	GRCh37	6	106553426	106553426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002487-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			230	150	228	0	ENST00000369096.4:c.1391C>T	p.Thr464Ile	p.T464I	ENST00000369096	NM_001198.3	464	aCt/aTt																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	10273940	10273940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002487-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	114	326	0	ENST00000330684.3:c.329C>T	p.Ala110Val	p.A110V	ENST00000330684	NM_001134407.1	110	gCc/gTc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578534	7578535	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002487-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			166	239	280	0	ENST00000269305.4:c.395dup	p.Met133AspfsTer16	p.M133Dfs*16	ENST00000269305	NM_001126112.2	132	aag/aaAg																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56448331	56448339	+	frameshift_variant	Frame_Shift_Del	DEL	TGCTGATGA	TGCTGATGA	C			P-0002487-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			147	250	228	0	ENST00000407977.2:c.308_316delinsG	p.Phe103CysfsTer19	p.F103Cfs*19	ENST00000407977		103	tTCATCAGCAtc/tGtc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579315	7579316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	273	362	0	ENST00000269305.4:c.371dupG	p.Cys124TrpfsTer25	p.C124Wfs*25	ENST00000269305	NM_001126112.2	124	tgc/tgGc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0012074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	194	286	0	ENST00000257430.4:c.3944C>G	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tGa																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212812239	212812239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	71	520	0	ENST00000342788.4:c.337G>A	p.Asp113Asn	p.D113N	ENST00000342788	NM_005235.2	113	Gat/Aat																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153268138	153268138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1406877044		P-0012074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	153	540	1	ENST00000281708.4:c.670C>T	p.Arg224Ter	p.R224*	ENST00000281708	NM_033632.3	224	Cga/Tga																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108188194	108188194	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	80	465	0	ENST00000278616.4:c.6293T>G	p.Leu2098Arg	p.L2098R	ENST00000278616	NM_000051.3	2098	cTt/cGt																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45368319	45368319	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	144	486	0	ENST00000262160.6:c.1283G>A	p.Arg428Lys	p.R428K	ENST00000262160	NM_005901.5	428	aGg/aAg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0014866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	128	707	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70339254	70339254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	17	858	0	ENST00000374080.3:c.131G>A	p.Gly44Asp	p.G44D	ENST00000374080		44	gGt/gAt																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0014866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	125	595	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																														NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8100660	8100660	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	186	966	0	ENST00000346208.3:c.634T>G	p.Ser212Ala	p.S212A	ENST00000346208		212	Tcc/Gcc																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68856094	68856095	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGTGCCAACTGGACCATTC			P-0014866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	106	821	0	ENST00000261769.5:c.1906_1924dup	p.Tyr642CysfsTer27	p.Y642Cfs*27	ENST00000261769	NM_004360.3	634	-/AGTGCCAACTGGACCATTC																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	11984681	11984684	+	frameshift_variant	Frame_Shift_Del	DEL	TGAG	TGAG	-			P-0014866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	29	504	1	ENST00000353533.5:c.227_230del	p.Leu76GlnfsTer11	p.L76Qfs*11	ENST00000353533	NM_003010.3	76	cTGAGa/ca																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56183253	56183253	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	134	620	0	ENST00000399503.3:c.4163A>G	p.Asp1388Gly	p.D1388G	ENST00000399503	NM_005921.1	1388	gAt/gGt																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115114237	115114239	+	frameshift_variant	Frame_Shift_Ins	INS	TCA	TCA	CCAT			P-0014866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	130	806	0	ENST00000257566.3:c.978_980delinsATGG	p.Asp326GlufsTer12	p.D326Efs*12	ENST00000257566	NM_016569.3	326	gaTGAa/gaATGGa																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0010215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1134	382	673	0	ENST00000269571.5:c.2331_2339dupGGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	245	544	0	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187629613	187629613	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	59	592	0	ENST00000441802.2:c.1369A>C	p.Asn457His	p.N457H	ENST00000441802	NM_005245.3	457	Aat/Cat																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133219096	133219096	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			959	125	510	0	ENST00000320574.5:c.4948A>T	p.Ser1650Cys	p.S1650C	ENST00000320574	NM_006231.2	1650	Agc/Tgc																																													NEWRECORD																																		
ERCC4	2072	MSKCC	GRCh37	16	14041710	14041710	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0010215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	111	611	0	ENST00000311895.7:c.2257A>T	p.Lys753Ter	p.K753*	ENST00000311895	NM_005236.2	753	Aag/Tag																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42795364	42795364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	206	434	0	ENST00000575354.2:c.2444C>T	p.Ala815Val	p.A815V	ENST00000575354	NM_015125.3	815	gCc/gTc																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76937958	76937958	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	41	639	0	ENST00000373344.5:c.2790T>A	p.Ser930Arg	p.S930R	ENST00000373344	NM_000489.3	930	agT/agA																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0002000-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			631	62	371	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106196970	106196970	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	89	467	0	ENST00000380013.4:c.5303C>A	p.Ala1768Glu	p.A1768E	ENST00000380013	NM_001127208.2	1768	gCa/gAa																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5210778	5210778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	173	454	1	ENST00000357368.4:c.5273C>T	p.Ala1758Val	p.A1758V	ENST00000357368	NM_002850.3	1758	gCg/gTg																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40735503	40735503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	134	484	0	ENST00000373198.4:c.3370G>A	p.Glu1124Lys	p.E1124K	ENST00000373198	NM_133170.3	1124	Gag/Aag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577571	7577572	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGTAGT			P-0003710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	135	361	0	ENST00000269305.4:c.704_709dup	p.Asn235_Tyr236dup	p.N235_Y236dup	ENST00000269305	NM_001126112.2	235	atg/aACTACAtg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0009294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	1299	607	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11217302	11217302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	330	581	0	ENST00000361445.4:c.4376C>A	p.Ala1459Asp	p.A1459D	ENST00000361445	NM_004958.3	1459	gCc/gAc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0009294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	288	414	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8100499	8100499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	262	634	2	ENST00000346208.3:c.473C>T	p.Pro158Leu	p.P158L	ENST00000346208		158	cCg/cTg																																													NEWRECORD																																		
MYOD1	4654	MSKCC	GRCh37	11	17741900	17741900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			24	17	31	0	ENST00000250003.3:c.571G>A	p.Glu191Lys	p.E191K	ENST00000250003	NM_002478.4	191	Gag/Aag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175531	112175532	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	243	434	0	ENST00000257430.4:c.4241dup	p.Ser1415LysfsTer8	p.S1415Kfs*8	ENST00000257430	NM_000038.5	1414	gta/gTta																																													NEWRECORD																																		
TGFBR1	7046	MSKCC	GRCh37	9	101867538	101867540	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0014493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	12	24	0	ENST00000374994.4:c.76_78delGCG	p.Ala26del	p.A26del	ENST00000374994	NM_004612.2	17	ctGGCg/ctg																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37881414	37881414	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1131692237		P-0014493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	373	574	0	ENST00000269571.5:c.2606T>G	p.Leu869Arg	p.L869R	ENST00000269571		869	cTg/cGg																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68862105	68862106	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	257	365	0	ENST00000261769.5:c.2193_2194insG	p.Arg732AlafsTer16	p.R732Afs*16	ENST00000261769	NM_004360.3	731	-/G																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952006	178952006	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	301	379	0	ENST00000263967.3:c.3061T>A	p.Tyr1021Asn	p.Y1021N	ENST00000263967	NM_006218.2	1021	Tac/Aac																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56178044	56178044	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	291	358	0	ENST00000399503.3:c.3018del	p.Gln1007ArgfsTer75	p.Q1007Rfs*75	ENST00000399503	NM_005921.1	1006	cTt/ct																																													NEWRECORD																																		
XIAP	331	MSKCC	GRCh37	X	123040864	123040864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	485	763	0	ENST00000355640.3:c.1327C>T	p.Arg443Cys	p.R443C	ENST00000355640		443	Cgc/Tgc																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115120708	115120709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0007559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	141	496	0	ENST00000257566.3:c.296_297dupTG	p.Glu100TrpfsTer40	p.E100Wfs*40	ENST00000257566	NM_016569.3	99	-/TG																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	72	226	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89347546	89347546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	63	568	0	ENST00000301030.4:c.5404G>A	p.Glu1802Lys	p.E1802K	ENST00000301030	NM_001256183.1	1802	Gaa/Aaa																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106508903	106508903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	41	163	1	ENST00000359195.3:c.897C>A	p.Asn299Lys	p.N299K	ENST00000359195	NM_002649.2	299	aaC/aaA																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116411567	116411567	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	98	252	0	ENST00000397752.3:c.2746T>C	p.Ser916Pro	p.S916P	ENST00000397752	NM_000245.2	916	Tct/Cct																																													NEWRECORD																																		
FANCC	2176	MSKCC	GRCh37	9	97864047	97864047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	61	398	1	ENST00000289081.3:c.1619G>A	p.Ser540Asn	p.S540N	ENST00000289081	NM_000136.2	540	aGc/aAc																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115120668	115120668	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	132	558	0	ENST00000257566.3:c.338G>A	p.Trp113Ter	p.W113*	ENST00000257566	NM_016569.3	113	tGg/tAg																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32936802	32936802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	67	338	0	ENST00000380152.3:c.7948G>C	p.Glu2650Gln	p.E2650Q	ENST00000380152		2650	Gaa/Caa																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68842724	68842724	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	76	379	0	ENST00000261769.5:c.661del	p.Asp221IlefsTer29	p.D221Ifs*29	ENST00000261769	NM_004360.3	220	ctG/ct																																													NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0008449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	76	242	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115112153	115112154	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	56	308	0	ENST00000257566.3:c.1586dup	p.Ala530ArgfsTer162	p.A530Rfs*162	ENST00000257566	NM_016569.3	529	ggc/ggGc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			580	289	474	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			117	161	237	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10602354	10602354	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			106	88	480	0	ENST00000171111.5:c.1224del	p.Met409Ter	p.M409*	ENST00000171111	NM_203500.1	408	ccC/cc																																													NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			159	55	372	1	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212426680	212426680	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	214	514	2	ENST00000342788.4:c.2435A>T	p.Lys812Met	p.K812M	ENST00000342788	NM_005235.2	812	aAg/aTg																																													NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1801190	1801190	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	30	426	0	ENST00000260795.2:c.319T>A	p.Tyr107Asn	p.Y107N	ENST00000260795		107	Tac/Aac																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55268023	55268023	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201830126		P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			292	97	433	0	ENST00000275493.2:c.2863G>A	p.Ala955Thr	p.A955T	ENST00000275493	NM_005228.3	955	Gca/Aca																																													NEWRECORD																																		
SDHAF2	54949	MSKCC	GRCh37	11	61213439	61213439	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			313	111	486	0	ENST00000301761.2:c.397G>T	p.Glu133Ter	p.E133*	ENST00000301761	NM_017841.2	133	Gaa/Taa																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73346365	73346365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			436	144	483	0	ENST00000377767.4:c.1435G>T	p.Asp479Tyr	p.D479Y	ENST00000377767	NM_014953.3	479	Gac/Tac																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95598870	95598870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	122	508	0	ENST00000343455.3:c.289G>T	p.Val97Leu	p.V97L	ENST00000343455	NM_177438.2	97	Gtg/Ttg																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2113037	2113037	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			223	45	488	0	ENST00000219476.3:c.1426A>G	p.Asn476Asp	p.N476D	ENST00000219476	NM_000548.3	476	Aac/Gac																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578514	7578514	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	88	438	0	ENST00000269305.4:c.416A>C	p.Lys139Thr	p.K139T	ENST00000269305	NM_001126112.2	139	aAg/aCg																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1220701	1220701	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			72	107	432	2	ENST00000326873.7:c.719C>A	p.Ser240Ter	p.S240*	ENST00000326873	NM_000455.4	240	tCg/tAg																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11134239	11134239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	92	476	0	ENST00000344626.4:c.2905C>A	p.His969Asn	p.H969N	ENST00000344626	NM_003072.3	969	Cac/Aac																																													NEWRECORD																																		
AKT2	208	MSKCC	GRCh37	19	40742002	40742002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			75	200	397	0	ENST00000392038.2:c.970G>A	p.Asp324Asn	p.D324N	ENST00000392038	NM_001626.4	324	Gac/Aac																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9560805	9560805	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	142	380	0	ENST00000353224.5:c.977T>A	p.Met326Lys	p.M326K	ENST00000353224	NM_177990.2	326	aTg/aAg																																													NEWRECORD																																		
CHEK2	11200	MSKCC	GRCh37	22	29121015	29121015	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			333	131	562	0	ENST00000328354.6:c.542G>T	p.Arg181Leu	p.R181L	ENST00000328354	NM_007194.3	181	cGt/cTt																																													NEWRECORD																																		
GATA1	2623	MSKCC	GRCh37	X	48650822	48650822	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	69	576	0	ENST00000376670.3:c.691T>C	p.Tyr231His	p.Y231H	ENST00000376670	NM_002049.3	231	Tat/Cat																																													NEWRECORD																																		
GATA1	2623	MSKCC	GRCh37	X	48652531	48652531	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			129	33	368	0	ENST00000376670.3:c.1202C>G	p.Pro401Arg	p.P401R	ENST00000376670	NM_002049.3	401	cCc/cGc																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212543861	212543862	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	286	436	0	ENST00000342788.4:c.1537dup	p.Trp513LeufsTer16	p.W513Lfs*16	ENST00000342788	NM_005235.2	513	tgg/tTgg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108154976	108154976	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			257	80	274	0	ENST00000278616.4:c.3770del	p.Pro1257HisfsTer4	p.P1257Hfs*4	ENST00000278616	NM_000051.3	1257	Cca/ca																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0009053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	162	364	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0009053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	112	409	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8341976	8341976	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	32	256	1	ENST00000356435.5:c.4664C>T	p.Ala1555Val	p.A1555V	ENST00000356435		1555	gCg/gTg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175475	112175476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTTGAGA			P-0009053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	83	342	0	ENST00000257430.4:c.4185_4192dupTTTTGAGA	p.Ser1398IlefsTer20	p.S1398Ifs*20	ENST00000257430	NM_000038.5	1395	agt/agTTTTGAGAt																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67591141	67591152	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CCAATACTTGAT	CCAATACTTGAT	-			P-0009053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	66	280	0	ENST00000274335.5:c.1734_1745delCCAATACTTGAT	p.Asp578_Met582delinsGlu	p.D578_M582delinsE	ENST00000274335		578	gaCCAATACTTGATg/gag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0005836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	61	505	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	187	357	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36164686	36164686	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	157	517	0	ENST00000300305.3:c.1189del	p.Gln397LysfsTer197	p.Q397Kfs*197	ENST00000300305		397	Caa/aa																																													NEWRECORD																																		
JAK2	3717	MSKCC	GRCh37	9	5054748	5054748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	134	495	0	ENST00000381652.3:c.800C>T	p.Thr267Ile	p.T267I	ENST00000381652	NM_004972.3	267	aCa/aTa																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36252961	36252962	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	147	341	0	ENST00000300305.3:c.400dup	p.Ala134GlyfsTer4	p.A134Gfs*4	ENST00000300305		134	gct/gGct																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68867234	68867237	+	stop_gained	Nonsense_Mutation	DEL	TGAT	TGAT	A			P-0010010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	370	419	0	ENST00000261769.5:c.2481_2484delinsA	p.Tyr827_Asp828delinsTer	p.Y827_D828delins*	ENST00000261769	NM_004360.3	827	taTGAT/taA																																													NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0012634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	119	384	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68855995	68855996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	209	650	0	ENST00000261769.5:c.1805dupT	p.Cys603LeufsTer2	p.C603Lfs*2	ENST00000261769	NM_004360.3	601	-/T																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	161	537	2	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0006317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			43	24	340	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0006317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			30	13	285	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	14	311	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156849033	156849033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	37	423	0	ENST00000524377.1:c.1925C>T	p.Ala642Val	p.A642V	ENST00000524377	NM_002529.3	642	gCg/gTg																																													NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215617281	215617281	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0006317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	18	278	0	ENST00000260947.4:c.1569-2A>G		p.X523_splice	ENST00000260947	NM_000465.2	523																																														NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106508176	106508176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	24	212	0	ENST00000359195.3:c.170C>T	p.Ala57Val	p.A57V	ENST00000359195	NM_002649.2	57	gCg/gTg																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8500865	8500865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	22	364	0	ENST00000356435.5:c.2017C>T	p.Leu673Phe	p.L673F	ENST00000356435		673	Ctt/Ttt																																													NEWRECORD																																		
WT1	7490	MSKCC	GRCh37	11	32456780	32456780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	16	144	1	ENST00000332351.3:c.112G>A	p.Gly38Ser	p.G38S	ENST00000332351	NM_024426.4	38	Ggc/Agc																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	27	430	0	ENST00000342988.3:c.1067C>G	p.Pro356Arg	p.P356R	ENST00000342988	NM_005359.5	356	cCt/cGt																																													NEWRECORD																																		
CDKN1B	1027	MSKCC	GRCh37	12	12870793	12870794	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	34	119	0	ENST00000228872.4:c.21dup	p.Asn8Ter	p.N8*	ENST00000228872	NM_004064.3	7	tct/tcTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577111	7577112	+	inframe_insertion	In_Frame_Ins	INS	-	-	CACAAA			P-0006317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	21	489	2	ENST00000269305.4:c.821_826dupTTTGTG	p.Val274_Cys275dup	p.V274_C275dup	ENST00000269305	NM_001126112.2	274	gcc/gTTTGTGcc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0012383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	92	539	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0012383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	52	360	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9857391	9857391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	133	527	5	ENST00000330684.3:c.4010C>T	p.Ser1337Leu	p.S1337L	ENST00000330684	NM_001134407.1	1337	tCg/tTg																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	182	477	0	ENST00000206249.3:c.1609T>C	p.Tyr537His	p.Y537H	ENST00000206249	NM_000125.3	537	Tat/Cat																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114917778	114917778	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0012383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	119	404	0	ENST00000543371.1:c.1270-2A>C		p.X424_splice	ENST00000543371	NM_001198531.1	424																																														NEWRECORD																																		
GATA1	2623	MSKCC	GRCh37	X	48652533	48652533	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	104	379	0	ENST00000376670.3:c.1204A>C	p.Thr402Pro	p.T402P	ENST00000376670	NM_002049.3	402	Acc/Ccc																																													NEWRECORD																																		
GNAQ	2776	MSKCC	GRCh37	9	80646045	80646066	+	frameshift_variant	Frame_Shift_Del	DEL	GCGTCCCGCTTGTCCCTGCGGA	GCGTCCCGCTTGTCCCTGCGGA	-			P-0012383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	29	279	0	ENST00000286548.4:c.86_107del	p.Leu29ProfsTer24	p.L29Pfs*24	ENST00000286548	NM_002072.3	29	cTCCGCAGGGACAAGCGGGACGCc/cc																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27087372	27087373	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	86	588	0	ENST00000324856.7:c.1950dup	p.Met651HisfsTer25	p.M651Hfs*25	ENST00000324856	NM_006015.4	649	ctc/ctCc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174909	112174910	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	173	425	0	ENST00000257430.4:c.3622dup	p.Thr1208AsnfsTer9	p.T1208Nfs*9	ENST00000257430	NM_000038.5	1206	-/A																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162731061	162731061	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	161	764	0	ENST00000367921.3:c.916T>G	p.Phe306Val	p.F306V	ENST00000367921	NM_006182.2	306	Ttc/Gtc																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71021758	71021758	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	354	755	0	ENST00000318789.4:c.1600T>A	p.Trp534Arg	p.W534R	ENST00000318789	NM_032682.5	534	Tgg/Agg																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56160663	56160663	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	242	548	0	ENST00000399503.3:c.937C>G	p.Arg313Gly	p.R313G	ENST00000399503	NM_005921.1	313	Cgg/Ggg																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89624294	89624295	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	146	381	0	ENST00000371953.3:c.69dupA	p.Asp24ArgfsTer20	p.D24Rfs*20	ENST00000371953	NM_000314.4	23	tta/ttAa																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	12032537	12032537	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	202	463	0	ENST00000353533.5:c.974del	p.Pro325LeufsTer4	p.P325Lfs*4	ENST00000353533	NM_003010.3	325	Cct/ct																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	206	359	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2958169	2958169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	173	433	0	ENST00000396946.4:c.2563C>T	p.Arg855Trp	p.R855W	ENST00000396946	NM_032415.4	855	Cgg/Tgg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0007035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	357	458	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	368	301	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135772950	135772951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs118203724		P-0007035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	225	365	1	ENST00000298552.3:c.2672dup	p.Asn891LysfsTer13	p.N891Kfs*13	ENST00000298552	NM_001162426.1	891	aac/aaAc																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47639655	47639655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	119	479	1	ENST00000233146.2:c.748G>A	p.Gly250Arg	p.G250R	ENST00000233146	NM_000251.2	250	Gga/Aga																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55371782	55371782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	61	112	0	ENST00000297316.4:c.472G>A	p.Gly158Ser	p.G158S	ENST00000297316	NM_022454.3	158	Ggc/Agc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	193	716	2	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0014514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	98	415	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98244261	98244261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	84	529	0	ENST00000331920.6:c.716C>T	p.Ala239Val	p.A239V	ENST00000331920	NM_000264.3	239	gCg/gTg																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32189003	32189003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	124	525	2	ENST00000375023.3:c.551C>T	p.Pro184Leu	p.P184L	ENST00000375023	NM_004557.3	184	cCg/cTg																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	49039414	49039414	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1394	126	571	1	ENST00000267163.4:c.2399C>A	p.Pro800His	p.P800H	ENST00000267163	NM_000321.2	800	cCt/cAt																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11100036	11100036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1143	167	625	0	ENST00000344626.4:c.1162C>T	p.Leu388Phe	p.L388F	ENST00000344626	NM_003072.3	388	Ctt/Ttt																																													NEWRECORD																																		
ICOSLG	23308	MSKCC	GRCh37	21	45655233	45655233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	130	542	2	ENST00000407780.3:c.619C>T	p.Arg207Trp	p.R207W	ENST00000407780	NM_001283052.1	207	Cgg/Tgg																																													NEWRECORD																																		
DROSHA	29102	MSKCC	GRCh37	5	31493364	31493364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	96	432	1	ENST00000344624.3:c.1792G>A	p.Glu598Lys	p.E598K	ENST00000344624		598	Gag/Aag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175535	112175536	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGCATTA			P-0014514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	87	334	0	ENST00000257430.4:c.4246_4253dup	p.Ile1418MetfsTer4	p.I1418Mfs*4	ENST00000257430	NM_000038.5	1415	agt/agTGGCATTAt																																													NEWRECORD																																		
PREX2	80243	MSKCC	GRCh37	8	68930152	68930152	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0014514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	80	466	0	ENST00000288368.4:c.213G>T	p.Lys71Asn	p.K71N	ENST00000288368	NM_024870.2	71	aaG/aaT																																													NEWRECORD																																		
CSF3R	1441	MSKCC	GRCh37	1	36941189	36941189	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1077	317	749	0	ENST00000361632.4:c.150G>C	p.Gln50His	p.Q50H	ENST00000361632		50	caG/caC																																													NEWRECORD																																		
CHEK2	11200	MSKCC	GRCh37	22	29091812	29091812	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	58	316	0	ENST00000328354.6:c.1145G>C	p.Arg382Thr	p.R382T	ENST00000328354	NM_007194.3	382	aGa/aCa																																													NEWRECORD																																		
GATA1	2623	MSKCC	GRCh37	X	48650601	48650601	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140561920		P-0012831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	290	737	0	ENST00000376670.3:c.571C>T	p.Arg191Cys	p.R191C	ENST00000376670	NM_002049.3	191	Cgt/Tgt																																													NEWRECORD																																		
PLK2	10769	MSKCC	GRCh37	5	57754908	57754909	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	163	305	0	ENST00000274289.3:c.281_282insT	p.Cys96MetfsTer10	p.C96Mfs*10	ENST00000274289	NM_006622.3	94	gca/gcTa																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0000933-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			164	38	132	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0000933-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	197	404	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0000933-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	89	363	3	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579314	7579314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0000933-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	48	314	0	ENST00000269305.4:c.373A>G	p.Thr125Ala	p.T125A	ENST00000269305	NM_001126112.2	125	Acg/Gcg																																													NEWRECORD																																		
JUN	3725	MSKCC	GRCh37	1	59248583	59248584	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0000933-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			805	163	520	0	ENST00000371222.2:c.158_159dup	p.Arg54SerfsTer27	p.R54Sfs*27	ENST00000371222	NM_002228.3	53	-/TC																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174113	112174113	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000933-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			421	84	427	0	ENST00000257430.4:c.2825del	p.Asn942IlefsTer13	p.N942Ifs*13	ENST00000257430	NM_000038.5	941	gAa/ga																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0012277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	63	407	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0012277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	51	332	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																													NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	85	401	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119111	70119111	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0012277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	27	137	1	ENST00000245479.2:c.683C>A	p.Ser228Ter	p.S228*	ENST00000245479	NM_000346.3	228	tCg/tAg																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180051054	180051054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	49	356	2	ENST00000261937.6:c.1429C>T	p.Arg477Trp	p.R477W	ENST00000261937	NM_182925.4	477	Cgg/Tgg																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81925183	81925183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	66	571	0	ENST00000359376.3:c.974C>T	p.Ser325Leu	p.S325L	ENST00000359376	NM_002661.3	325	tCg/tTg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173668	112173669	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	52	322	0	ENST00000257430.4:c.2380dup	p.Ser794LysfsTer5	p.S794Kfs*5	ENST00000257430	NM_000038.5	793	caa/cAaa																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	84	403	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108216476	108216477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	30	379	0	ENST00000278616.4:c.8432dupA	p.Ser2812ValfsTer3	p.S2812Vfs*3	ENST00000278616	NM_000051.3	2809	caa/cAaa																																													NEWRECORD																																		
PMS1	5378	MSKCC	GRCh37	2	190742011	190742011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	51	396	0	ENST00000441310.2:c.2648G>A	p.Arg883His	p.R883H	ENST00000441310	NM_000534.4	883	cGt/cAt																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88420269	88420269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	63	357	0	ENST00000360948.2:c.2417G>T	p.Cys806Phe	p.C806F	ENST00000360948	NM_001012338.2	806	tGc/tTc																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0006840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	103	280	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																													NEWRECORD																																		
INPP4A	3631	MSKCC	GRCh37	2	99170797	99170797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	236	549	0	ENST00000074304.5:c.1426G>A	p.Ala476Thr	p.A476T	ENST00000074304	NM_001134224.1	476	Gct/Act																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52678781	52678781	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	296	376	0	ENST00000394830.3:c.838T>C	p.Phe280Leu	p.F280L	ENST00000394830	NM_018313.4	280	Ttt/Ctt																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106157728	106157728	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	179	436	2	ENST00000380013.4:c.2629G>C	p.Asp877His	p.D877H	ENST00000380013	NM_001127208.2	877	Gat/Cat																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38944570	38944570	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1191	196	523	0	ENST00000357387.3:c.4891T>C	p.Cys1631Arg	p.C1631R	ENST00000357387	NM_152756.3	1631	Tgt/Cgt																																													NEWRECORD																																		
SYK	6850	MSKCC	GRCh37	9	93626890	93626890	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	600	625	0	ENST00000375746.1:c.737A>C	p.Tyr246Ser	p.Y246S	ENST00000375746	NM_001174167.1	246	tAt/tCt																																													NEWRECORD																																		
RAD51D	5892	MSKCC	GRCh37	17	33427978	33427978	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	468	639	0	ENST00000335858.7:c.645G>C	p.Gln215His	p.Q215H	ENST00000335858	NM_133629.2	215	caG/caC																																													NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	347795	347816	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGTGTGGTTCCAGGCCCCA	GGCTGTGTGGTTCCAGGCCCCA	-			P-0006840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	89	619	0	ENST00000262320.3:c.1690_1711del	p.Trp564MetfsTer134	p.W564Mfs*134	ENST00000262320	NM_003502.3	564	TGGGGCCTGGAACCACACAGCCat/at																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44937647	44937679	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GGAAAATAAACGTGATGCTTTCTTTCCTCCATT	GGAAAATAAACGTGATGCTTTCTTTCCTCCATT	-			P-0006840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	94	234	0	ENST00000377967.4:c.2835_2867del	p.Glu946_Leu956del	p.E946_L956del	ENST00000377967	NM_021140.2	945	ttGGAAAATAAACGTGATGCTTTCTTTCCTCCATTa/tta																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0008164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	313	287	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0008164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	71	211	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66931483	66931483	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	162	209	0	ENST00000374690.3:c.2125G>T	p.Gly709Ter	p.G709*	ENST00000374690	NM_000044.3	709	Gga/Tga																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27102097	27102098	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	138	414	0	ENST00000324856.7:c.5026dup	p.Leu1676ProfsTer22	p.L1676Pfs*22	ENST00000324856	NM_006015.4	1675	tcc/tCcc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0012120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	214	384	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138461563	138461563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	333	675	1	ENST00000289153.2:c.458G>A	p.Arg153His	p.R153H	ENST00000289153	NM_006219.2	153	cGc/cAc																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67100703	67100703	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0012120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	158	542	0	ENST00000412916.2:c.399+2T>C		p.X133_splice	ENST00000412916		133																																														NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41226448	41226448	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	119	858	1	ENST00000357654.3:c.4575A>T	p.Gln1525His	p.Q1525H	ENST00000357654	NM_007294.3	1525	caA/caT																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115730	8115731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGC			P-0012120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	145	813	0	ENST00000346208.3:c.1078_1081dup	p.Ile361ArgfsTer11	p.I361Rfs*11	ENST00000346208		359	gaa/gaAGGCa																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0014645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	116	622	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578445	7578446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	221	619	0	ENST00000269305.4:c.484dup	p.Ile162AsnfsTer19	p.I162Nfs*19	ENST00000269305	NM_001126112.2	162	atc/aAtc																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15291780	15291780	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	204	661	0	ENST00000263388.2:c.2986C>T	p.Gln996Ter	p.Q996*	ENST00000263388	NM_000435.2	996	Cag/Tag																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1260600	1260600	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	80	572	0	ENST00000310581.5:c.2959C>G	p.Leu987Val	p.L987V	ENST00000310581	NM_198253.2	987	Ctg/Gtg																																													NEWRECORD																																		
SESN1	27244	MSKCC	GRCh37	6	109319929	109319929	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	72	648	0	ENST00000436639.2:c.759G>T	p.Trp253Cys	p.W253C	ENST00000436639	NM_014454.2	253	tgG/tgT																																													NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50467718	50467718	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	196	686	0	ENST00000331340.3:c.953C>G	p.Ala318Gly	p.A318G	ENST00000331340	NM_006060.4	318	gCc/gGc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0013577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	477	834	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	384	795	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133254252	133254252	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	475	856	0	ENST00000320574.5:c.632T>A	p.Ile211Lys	p.I211K	ENST00000320574	NM_006231.2	211	aTa/aAa																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16029443	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	TTCT	TTCT	-			P-0013577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	569	874	0	ENST00000268712.3:c.1584_1587del	p.Glu529LysfsTer25	p.E529Kfs*25	ENST00000268712	NM_006311.3	528	aaAGAA/aa																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591798	48591798	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	256	543	0	ENST00000342988.3:c.961G>T	p.Glu321Ter	p.E321*	ENST00000342988	NM_005359.5	321	Gag/Tag																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11152182	11152182	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	361	650	0	ENST00000344626.4:c.4370A>G	p.Asn1457Ser	p.N1457S	ENST00000344626	NM_003072.3	1457	aAc/aGc																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76938062	76938062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	109	767	0	ENST00000373344.5:c.2686G>A	p.Asp896Asn	p.D896N	ENST00000373344	NM_000489.3	896	Gat/Aat																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0011592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	100	89	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																													NEWRECORD																																		
NTRK2	4915	MSKCC	GRCh37	9	87570239	87570239	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201105177		P-0011592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	54	174	1	ENST00000277120.3:c.1979C>T	p.Pro660Leu	p.P660L	ENST00000277120		660	cCg/cTg																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2946319	2946319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	63	315	0	ENST00000396946.4:c.3418G>A	p.Gly1140Ser	p.G1140S	ENST00000396946	NM_032415.4	1140	Ggc/Agc																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49444122	49444122	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	75	414	1	ENST00000301067.7:c.3249C>A	p.Cys1083Ter	p.C1083*	ENST00000301067	NM_003482.3	1083	tgC/tgA																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68842408	68842409	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	242	386	0	ENST00000261769.5:c.471dup	p.Ile158TyrfsTer10	p.I158Yfs*10	ENST00000261769	NM_004360.3	157	gtt/gTtt																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29562766	29562778	+	frameshift_variant	Frame_Shift_Del	DEL	TAAAATAATGACA	TAAAATAATGACA	-			P-0011592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	45	208	0	ENST00000358273.4:c.3847_3859del	p.Lys1283SerfsTer22	p.K1283Sfs*22	ENST00000358273	NM_001042492.2	1282	agTAAAATAATGACA/ag																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009325-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			450	110	180	0	ENST00000346208.3:c.1300dup	p.His434ProfsTer73	p.H434Pfs*73	ENST00000346208		433	cac/caCc																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45371745	45371745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009325-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			978	53	504	0	ENST00000262160.6:c.1246A>G	p.Met416Val	p.M416V	ENST00000262160	NM_005901.5	416	Atg/Gtg																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151875049	151875056	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCTTGA	GCTCTTGA	-			P-0009325-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			609	108	235	0	ENST00000262189.6:c.7482_7489del	p.Ser2494ArgfsTer28	p.S2494Rfs*28	ENST00000262189	NM_170606.2	2494	agTCAAGAGCgc/aggc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	83	246	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0008041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	14	392	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0008041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	46	147	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																													NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90958438	90958438	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	16	343	0	ENST00000265433.3:c.2000C>G	p.Ser667Cys	p.S667C	ENST00000265433	NM_002485.4	667	tCt/tGt																																													NEWRECORD																																		
EGFL7	51162	MSKCC	GRCh37	9	139566538	139566538	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	62	300	0	ENST00000308874.7:c.797C>T	p.Ser266Phe	p.S266F	ENST00000308874		266	tCc/tTc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578419	7578420	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGTCATGTG			P-0008041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	49	247	0	ENST00000269305.4:c.502_510dup	p.His168_Thr170dup	p.H168_T170dup	ENST00000269305	NM_001126112.2	168	-/CACATGACG																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	47	54	0				ENST00000310581	NM_198253.2																																															NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42019392	42019392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1152	304	480	1	ENST00000219905.7:c.3445G>A	p.Glu1149Lys	p.E1149K	ENST00000219905	NM_001164273.1	1149	Gag/Aag																																													NEWRECORD																																		
BAP1	8314	MSKCC	GRCh37	3	52439142	52439175	+	frameshift_variant	Frame_Shift_Del	DEL	GCATAATTGTGATTGTCTAGAAAGGCCGGCAGCC	GCATAATTGTGATTGTCTAGAAAGGCCGGCAGCC	-			P-0010813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	130	168	0	ENST00000460680.1:c.1067_1100del	p.Arg356ProfsTer63	p.R356Pfs*63	ENST00000460680	NM_004656.3	356	cGGCTGCCGGCCTTTCTAGACAATCACAATTATGCc/cc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579441	7579442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	255	312	0	ENST00000269305.4:c.245dup	p.Ala83GlyfsTer66	p.A83Gfs*66	ENST00000269305	NM_001126112.2	82	ccg/ccCg																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187521382	187521388	+	frameshift_variant	Frame_Shift_Del	DEL	AGCGAGC	AGCGAGC	-			P-0010813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	102	369	0	ENST00000441802.2:c.11767_11773del	p.Ala3923TrpfsTer3	p.A3923Wfs*3	ENST00000441802	NM_005245.3	3923	GCTCGCTtg/tg																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187584585	187584586	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0010813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	123	384	0	ENST00000441802.2:c.3447_3448delinsTT	p.Met1149_Glu1150delinsIleTer	p.M1149_E1150delinsI*	ENST00000441802	NM_005245.3	1149	atGGaa/atTTaa																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18650591	18650591	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	46	482	0	ENST00000266497.5:c.2802G>T	p.Gln934His	p.Q934H	ENST00000266497		934	caG/caT																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	115	403	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49420289	49420289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768551828		P-0006709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	54	536	0	ENST00000301067.7:c.15460C>T	p.Arg5154Trp	p.R5154W	ENST00000301067	NM_003482.3	5154	Cgg/Tgg																																													NEWRECORD																																		
NUP93	9688	MSKCC	GRCh37	16	56871587	56871587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	51	593	0	ENST00000308159.5:c.1967C>T	p.Pro656Leu	p.P656L	ENST00000308159	NM_014669.4	656	cCg/cTg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0006709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	114	494	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																													NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35867540	35867541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1250237683		P-0006709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	33	383	0	ENST00000303115.3:c.361dup	p.Ile121AsnfsTer8	p.I121Nfs*8	ENST00000303115	NM_002185.3	118	-/A																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	37	205	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	134	147	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																													NEWRECORD																																		
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519922		P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	340	639	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782144		P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	375	461	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc																																													NEWRECORD																																		
SHQ1	55164	MSKCC	GRCh37	3	72799866	72799866	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	101	364	0	ENST00000325599.8:c.1303G>T	p.Ala435Ser	p.A435S	ENST00000325599	NM_018130.2	435	Gca/Tca																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55152105	55152105	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	113	473	0	ENST00000257290.5:c.2537A>T	p.Asp846Val	p.D846V	ENST00000257290	NM_006206.4	846	gAt/gTt																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55270256	55270256	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	143	573	0	ENST00000275493.2:c.3209G>C	p.Ser1070Thr	p.S1070T	ENST00000275493	NM_005228.3	1070	aGc/aCc																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115118874	115118874	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	115	448	0	ENST00000257566.3:c.467T>A	p.Ile156Lys	p.I156K	ENST00000257566	NM_016569.3	156	aTa/aAa																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	49033915	49033915	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	280	588	1	ENST00000267163.4:c.2052C>A	p.Phe684Leu	p.F684L	ENST00000267163	NM_000321.2	684	ttC/ttA																																													NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91358472	91358472	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	310	632	0	ENST00000355112.3:c.4217A>G	p.Asn1406Ser	p.N1406S	ENST00000355112	NM_000057.2	1406	aAt/aGt																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15960886	15960886	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	200	409	0	ENST00000268712.3:c.6334C>A	p.His2112Asn	p.H2112N	ENST00000268712	NM_006311.3	2112	Cat/Aat																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16260213	16260214	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	35	215	0	ENST00000375759.3:c.7484dup	p.Thr2496TyrfsTer2	p.T2496Yfs*2	ENST00000375759	NM_015001.2	2493	agc/agCc																																													NEWRECORD																																		
FH	2271	MSKCC	GRCh37	1	241680480	241680480	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0006734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	258	361	0	ENST00000366560.3:c.267+2T>C		p.X89_splice	ENST00000366560	NM_000143.3	89																																														NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106508954	106508954	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	152	342	0	ENST00000359195.3:c.948C>G	p.Asp316Glu	p.D316E	ENST00000359195	NM_002649.2	316	gaC/gaG																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45394757	45394757	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	302	557	0	ENST00000262160.6:c.592C>G	p.His198Asp	p.H198D	ENST00000262160	NM_005901.5	198	Cac/Gac																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41306550	41306550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	88	506	0	ENST00000373198.4:c.1109C>T	p.Thr370Met	p.T370M	ENST00000373198	NM_133170.3	370	aCg/aTg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27107224	27107225	+	frameshift_variant	Frame_Shift_Ins	INS	CT	CT	GTA			P-0006734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	280	345	0	ENST00000324856.7:c.6835_6836delinsGTA	p.Leu2279ValfsTer106	p.L2279Vfs*106	ENST00000324856	NM_006015.4	2279	CTg/GTAg																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0004438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	53	327	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	28	130	1				ENST00000310581	NM_198253.2																																															NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16260950	16260950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	29	126	0	ENST00000375759.3:c.8215G>A	p.Val2739Met	p.V2739M	ENST00000375759	NM_015001.2	2739	Gtg/Atg																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453119	140453119	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	55	337	0	ENST00000288602.6:c.1816G>T	p.Gly606Trp	p.G606W	ENST00000288602	NM_004333.4	606	Ggg/Tgg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139401005	139401005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	31	370	0	ENST00000277541.6:c.3988C>T	p.Arg1330Cys	p.R1330C	ENST00000277541	NM_017617.3	1330	Cgc/Tgc																																													NEWRECORD																																		
CDKN1A	1026	MSKCC	GRCh37	6	36652262	36652263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	31	252	0	ENST00000244741.5:c.387dup	p.Ser130ValfsTer67	p.S130Vfs*67	ENST00000244741	NM_000389.4	128	-/G																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0013043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	93	328	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68835780	68835781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	121	521	0	ENST00000261769.5:c.377dup	p.Pro127AlafsTer41	p.P127Afs*41	ENST00000261769	NM_004360.3	124	cgc/cgCc																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47641522	47641522	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001687-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	75	301	0	ENST00000233146.2:c.907G>C	p.Asp303His	p.D303H	ENST00000233146	NM_000251.2	303	Gat/Cat																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139399484	139399484	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001687-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			861	63	420	0	ENST00000277541.6:c.4659G>C	p.Glu1553Asp	p.E1553D	ENST00000277541	NM_017617.3	1553	gaG/gaC																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32945219	32945219	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001687-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			377	196	363	0	ENST00000380152.3:c.8614G>T	p.Glu2872Ter	p.E2872*	ENST00000380152		2872	Gaa/Taa																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9857739	9857739	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001687-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			516	137	496	0	ENST00000330684.3:c.3662T>C	p.Met1221Thr	p.M1221T	ENST00000330684	NM_001134407.1	1221	aTg/aCg																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061705	38061706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001687-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			418	93	194	0	ENST00000250448.2:c.283dup	p.Ser95LysfsTer132	p.S95Kfs*132	ENST00000250448	NM_004496.3	95	agc/aAgc																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1218423	1218423	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001687-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			491	348	420	0	ENST00000326873.7:c.298del	p.Gln100AsnfsTer3	p.Q100Nfs*3	ENST00000326873	NM_000455.4	100	Caa/aa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0007222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	196	500	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0007222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	89	418	1	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162746132	162746132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	65	412	1	ENST00000367921.3:c.2255G>A	p.Arg752His	p.R752H	ENST00000367921	NM_006182.2	752	cGc/cAc																																													NEWRECORD																																		
TCEB1	6921	MSKCC	GRCh37	8	74868211	74868211	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	11	105	0	ENST00000284811.8:c.83A>G	p.Glu28Gly	p.E28G	ENST00000284811		28	gAa/gGa																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9858493	9858493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	36	469	0	ENST00000330684.3:c.2908C>T	p.Arg970Trp	p.R970W	ENST00000330684	NM_001134407.1	970	Cgg/Tgg																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9916143	9916143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	63	415	0	ENST00000330684.3:c.2146G>T	p.Ala716Ser	p.A716S	ENST00000330684	NM_001134407.1	716	Gcc/Tcc																																													NEWRECORD																																		
ERCC4	2072	MSKCC	GRCh37	16	14042110	14042110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	108	432	0	ENST00000311895.7:c.2657G>A	p.Ser886Asn	p.S886N	ENST00000311895	NM_005236.2	886	aGt/aAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173614	112173615	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0007222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	55	446	0	ENST00000257430.4:c.2323_2324del	p.Asn775TyrfsTer12	p.N775Yfs*12	ENST00000257430	NM_000038.5	775	AAt/t																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175646	112175647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0007222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	93	538	0	ENST00000257430.4:c.4356_4357dup	p.Pro1453HisfsTer21	p.P1453Hfs*21	ENST00000257430	NM_000038.5	1452	gta/gtACa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0003023-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			857	95	582	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49438210	49438211	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003023-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			877	64	542	0	ENST00000301067.7:c.5058dup	p.Arg1687ThrfsTer4	p.R1687Tfs*4	ENST00000301067	NM_003482.3	1686	-/A																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	295	359	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	156	350	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																													NEWRECORD																																		
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	238	497	0	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29430136	29430136	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs74716434		P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	31	289	1	ENST00000389048.3:c.3839C>T	p.Ala1280Val	p.A1280V	ENST00000389048	NM_004304.4	1280	gCg/gTg																																													NEWRECORD																																		
FAM46C	54855	MSKCC	GRCh37	1	118166505	118166505	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs865949572		P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	59	358	0	ENST00000369448.3:c.1015C>T	p.Arg339Cys	p.R339C	ENST00000369448	NM_017709.3	339	Cgt/Tgt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	175	298	1	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11217207	11217207	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	79	298	0	ENST00000361445.4:c.4469+2T>C		p.X1490_splice	ENST00000361445	NM_004958.3	1490																																														NEWRECORD																																		
SDHB	6390	MSKCC	GRCh37	1	17380489	17380489	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	283	377	0	ENST00000375499.3:c.26T>C	p.Leu9Ser	p.L9S	ENST00000375499	NM_003000.2	9	tTg/tCg																																													NEWRECORD																																		
MUTYH	4595	MSKCC	GRCh37	1	45797890	45797890	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146044717		P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	35	461	0	ENST00000372115.3:c.839G>A	p.Arg280His	p.R280H	ENST00000372115	NM_001048171.1	280	cGc/cAc																																													NEWRECORD																																		
FUBP1	8880	MSKCC	GRCh37	1	78435636	78435636	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	271	438	0	ENST00000370768.2:c.184G>T	p.Gly62Ter	p.G62*	ENST00000370768	NM_003902.3	62	Gga/Tga																																													NEWRECORD																																		
INPP4A	3631	MSKCC	GRCh37	2	99160342	99160342	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	25	287	0	ENST00000074304.5:c.821T>C	p.Val274Ala	p.V274A	ENST00000074304	NM_001134224.1	274	gTg/gCg																																													NEWRECORD																																		
IDH1	3417	MSKCC	GRCh37	2	209116175	209116175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	73	398	0	ENST00000345146.2:c.101A>G	p.Tyr34Cys	p.Y34C	ENST00000345146	NM_005896.2	34	tAc/tGc																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30713346	30713346	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs112465572		P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	18	327	0	ENST00000359013.4:c.746G>A	p.Arg249His	p.R249H	ENST00000359013	NM_001024847.2	249	cGc/cAc																																													NEWRECORD																																		
MLH1	4292	MSKCC	GRCh37	3	37070411	37070411	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	171	340	1	ENST00000231790.2:c.1546C>T	p.Gln516Ter	p.Q516*	ENST00000231790	NM_000249.3	516	Cag/Tag																																													NEWRECORD																																		
RHOA	387	MSKCC	GRCh37	3	49405964	49405964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	87	448	0	ENST00000418115.1:c.174G>T	p.Trp58Cys	p.W58C	ENST00000418115	NM_001664.2	58	tgG/tgT																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134960032	134960032	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779665397		P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	59	333	0	ENST00000398015.3:c.2389G>A	p.Ala797Thr	p.A797T	ENST00000398015	NM_004441.4	797	Gcc/Acc																																													NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185191379	185191379	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	42	348	0	ENST00000265026.3:c.2260A>C	p.Ser754Arg	p.S754R	ENST00000265026	NM_004721.4	754	Agc/Cgc																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187521198	187521198	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	37	578	0	ENST00000441802.2:c.11957A>C	p.Glu3986Ala	p.E3986A	ENST00000441802	NM_005245.3	3986	gAg/gCg																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187540721	187540721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	54	425	0	ENST00000441802.2:c.7019G>A	p.Gly2340Asp	p.G2340D	ENST00000441802	NM_005245.3	2340	gGc/gAc																																													NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35876136	35876136	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	263	397	0	ENST00000303115.3:c.928A>T	p.Arg310Trp	p.R310W	ENST00000303115	NM_002185.3	310	Agg/Tgg																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	94066627	94066627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	314	588	1	ENST00000369303.4:c.1132G>A	p.Glu378Lys	p.E378K	ENST00000369303	NM_004440.3	378	Gaa/Aaa																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139413924	139413924	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	153	406	0	ENST00000277541.6:c.836A>G	p.Tyr279Cys	p.Y279C	ENST00000277541	NM_017617.3	279	tAc/tGc																																													NEWRECORD																																		
PAK1	5058	MSKCC	GRCh37	11	77060334	77060334	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	28	339	0	ENST00000356341.3:c.837-2A>C		p.X279_splice	ENST00000356341	NM_002576.4	279																																														NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108190680	108190680	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	83	310	2	ENST00000278616.4:c.6348-1G>A		p.X2116_splice	ENST00000278616	NM_000051.3	2116																																														NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18435385	18435385	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	89	445	0	ENST00000266497.5:c.370T>C	p.Cys124Arg	p.C124R	ENST00000266497		124	Tgc/Cgc																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57864309	57864309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	194	576	0	ENST00000228682.2:c.1786G>A	p.Ala596Thr	p.A596T	ENST00000228682	NM_005269.2	596	Gcc/Acc																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28877320	28877320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	144	213	0	ENST00000282397.4:c.4001C>T	p.Ser1334Phe	p.S1334F	ENST00000282397	NM_002019.4	1334	tCc/tTc																																													NEWRECORD																																		
NKX2-1	7080	MSKCC	GRCh37	14	36986574	36986574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	21	276	0	ENST00000354822.5:c.1115G>A	p.Gly372Asp	p.G372D	ENST00000354822	NM_001079668.2	372	gGc/gAc																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2129325	2129325	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	46	451	0	ENST00000219476.3:c.3180G>A	p.Trp1060Ter	p.W1060*	ENST00000219476	NM_000548.3	1060	tgG/tgA																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9857833	9857833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	22	512	1	ENST00000330684.3:c.3568C>T	p.His1190Tyr	p.H1190Y	ENST00000330684	NM_001134407.1	1190	Cac/Tac																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72821547	72821547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	118	323	0	ENST00000268489.5:c.10628C>A	p.Ala3543Asp	p.A3543D	ENST00000268489	NM_006885.3	3543	gCt/gAt																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10610421	10610421	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	197	388	1	ENST00000171111.5:c.289A>T	p.Lys97Ter	p.K97*	ENST00000171111	NM_203500.1	97	Aag/Tag																																													NEWRECORD																																		
E2F3	1871	MSKCC	GRCh37	6	20480138	20480138	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	146	426	0	ENST00000346618.3:c.459del	p.Lys154ArgfsTer41	p.K154Rfs*41	ENST00000346618	NM_001949.4	152	aCc/ac																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117681016	117681016	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	37	396	0	ENST00000368508.3:c.3604del	p.Asp1202ThrfsTer41	p.D1202Tfs*41	ENST00000368508	NM_002944.2	1202	Gac/ac																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	44	255	2	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																													NEWRECORD																																		
XPO1	7514	MSKCC	GRCh37	2	61729435	61729435	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	45	408	0	ENST00000401558.2:c.312del	p.Lys104AsnfsTer17	p.K104Nfs*17	ENST00000401558	NM_003400.3	104	aaA/aa																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48954320	48954321	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	273	325	0	ENST00000267163.4:c.1446dup	p.His483SerfsTer10	p.H483Sfs*10	ENST00000267163	NM_000321.2	481	att/aTtt																																													NEWRECORD																																		
PRDM1	639	MSKCC	GRCh37	6	106553280	106553281	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	71	368	0	ENST00000369096.4:c.1251dupC	p.Tyr418LeufsTer6	p.Y418Lfs*6	ENST00000369096	NM_001198.3	415	-/C																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0005940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	101	392	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37863278	37863278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	1334	455	0	ENST00000269571.5:c.109G>A	p.Ala37Thr	p.A37T	ENST00000269571		37	Gcc/Acc																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36171600	36171600	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0005940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	42	201	0	ENST00000300305.3:c.965C>G	p.Ser322Ter	p.S322*	ENST00000300305		322	tCa/tGa																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67589592	67589593	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTT			P-0005940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	125	233	0	ENST00000274335.5:c.1356_1357insTTT	p.Tyr452_Asn453insPhe	p.Y452_N453insF	ENST00000274335		452	tat/taTTTt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0010365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	291	421	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0010365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	254	326	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0010365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	404	539	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																													NEWRECORD																																		
CTLA4	1493	MSKCC	GRCh37	2	204735422	204735422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	145	268	0	ENST00000302823.3:c.223C>T	p.Arg75Trp	p.R75W	ENST00000302823	NM_005214.4	75	Cgg/Tgg																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56183205	56183205	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0010365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	105	214	0	ENST00000399503.3:c.4115G>A	p.Gly1372Asp	p.G1372D	ENST00000399503	NM_005921.1	1372	gGt/gAt																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18435658	18435658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143896492		P-0010365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	82	256	0	ENST00000266497.5:c.643G>A	p.Gly215Arg	p.G215R	ENST00000266497		215	Gga/Aga																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5231459	5231459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1074	197	482	0	ENST00000357368.4:c.2017G>A	p.Gly673Ser	p.G673S	ENST00000357368	NM_002850.3	673	Ggc/Agc																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29443574	29443574	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0014483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	265	586	0	ENST00000389048.3:c.3643C>A	p.Pro1215Thr	p.P1215T	ENST00000389048	NM_004304.4	1215	Ccg/Acg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7576888	7576888	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	182	615	0	ENST00000269305.4:c.958A>T	p.Lys320Ter	p.K320*	ENST00000269305	NM_001126112.2	320	Aag/Tag																																													NEWRECORD																																		
PAK1	5058	MSKCC	GRCh37	11	77090974	77090974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3711	583	583	1	ENST00000356341.3:c.256C>T	p.His86Tyr	p.H86Y	ENST00000356341	NM_002576.4	86	Cat/Tat																																													NEWRECORD																																		
MSI1	4440	MSKCC	GRCh37	12	120794714	120794714	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	224	477	0	ENST00000257552.2:c.643G>C	p.Gly215Arg	p.G215R	ENST00000257552	NM_002442.3	215	Ggc/Cgc																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89807250	89807252	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0014483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	148	526	1	ENST00000389301.3:c.3788_3790del	p.Phe1263del	p.F1263del	ENST00000389301	NM_000135.2	1263	tTCTcc/tcc																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142176504	142176504	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	216	427	2	ENST00000350721.4:c.7597C>T	p.Arg2533Ter	p.R2533*	ENST00000350721	NM_001184.3	2533	Cga/Tga																																													NEWRECORD																																		
EIF4A2	1974	MSKCC	GRCh37	3	186503816	186503816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	200	467	1	ENST00000323963.5:c.493G>A	p.Asp165Asn	p.D165N	ENST00000323963		165	Gat/Aat																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56152571	56152572	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0014483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	316	337	0	ENST00000399503.3:c.629dup	p.Val211CysfsTer9	p.V211Cfs*9	ENST00000399503	NM_005921.1	209	-/C																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48023036	48023036	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			583	40	260	0	ENST00000234420.5:c.461C>G	p.Ser154Ter	p.S154*	ENST00000234420	NM_000179.2	154	tCa/tGa																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55370981	55370982	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			598	36	192	0	ENST00000297316.4:c.283_284insT	p.Asn95IlefsTer67	p.N95Ifs*67	ENST00000297316	NM_022454.3	95	aac/aTac																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0007508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	494	358	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0007508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	784	396	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55153609	55153609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	143	390	0	ENST00000257290.5:c.2575G>A	p.Val859Met	p.V859M	ENST00000257290	NM_006206.4	859	Gtg/Atg																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11300444	11300444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	158	290	0	ENST00000361445.4:c.1702C>T	p.Pro568Ser	p.P568S	ENST00000361445	NM_004958.3	568	Cct/Tct																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	29001342	29001342	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	218	339	1	ENST00000282397.4:c.1390A>G	p.Ile464Val	p.I464V	ENST00000282397	NM_002019.4	464	Atc/Gtc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174176	112174177	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	278	447	0	ENST00000257430.4:c.2886dup	p.Ser963Ter	p.S963*	ENST00000257430	NM_000038.5	962	gat/gaTt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			198	177	320	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645922	67645922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			29	131	319	0	ENST00000264010.4:c.850C>T	p.His284Tyr	p.H284Y	ENST00000264010	NM_006565.3	284	Cac/Tac																																													NEWRECORD																																		
NKX3-1	4824	MSKCC	GRCh37	8	23538852	23538852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	31	310	0	ENST00000380871.4:c.587C>T	p.Ser196Phe	p.S196F	ENST00000380871	NM_006167.3	196	tCt/tTt																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	12016585	12016585	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			46	173	343	0	ENST00000353533.5:c.721G>T	p.Gly241Ter	p.G241*	ENST00000353533	NM_003010.3	241	Gga/Tga																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71101695	71101698	+	frameshift_variant	Frame_Shift_Del	DEL	GGCT	GGCT	-			P-0001875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			55	120	399	0	ENST00000318789.4:c.500_503del	p.Gln167LeufsTer38	p.Q167Lfs*38	ENST00000318789	NM_032682.5	167	cAGCCt/ct																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111475	8111476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			330	267	377	2	ENST00000346208.3:c.962dupA	p.Thr322AspfsTer30	p.T322Dfs*30	ENST00000346208		321	cag/cAag																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	220	462	0	ENST00000349496.5:c.94G>C	p.Asp32His	p.D32H	ENST00000349496	NM_001904.3	32	Gac/Cac																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2138599	2138610	+	stop_lost,inframe_deletion	Nonstop_Mutation	DEL	CGAGTTTGTGTG	CGAGTTTGTGTG	-			P-0012643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	320	437	1	ENST00000219476.3:c.5412_5423del	p.GluPheValTer1805delextTer15	p.EFV*1805delext*15	ENST00000219476	NM_000548.3	1805	acCGAGTTTGTGTGa/aca																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108196950	108196951	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CC			P-0012643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	271	261	0	ENST00000278616.4:c.6974_6975insCC	p.Asn2326ArgfsTer6	p.N2326Rfs*6	ENST00000278616	NM_000051.3	2325	gcg/gCCcg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	88	483	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48584560	48584560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	24	528	0	ENST00000342988.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000342988	NM_005359.5	245	Cag/Tag																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0005968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	13	1057	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																													NEWRECORD																																		
CDKN1B	1027	MSKCC	GRCh37	12	12871063	12871064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	137	326	0	ENST00000228872.4:c.291dup	p.Ala98CysfsTer27	p.A98Cfs*27	ENST00000228872	NM_004064.3	97	ggt/ggTt																																													NEWRECORD																																		
FAM175A	84142	MSKCC	GRCh37	4	84383707	84383707	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	12	576	2	ENST00000321945.7:c.1145C>G	p.Ala382Gly	p.A382G	ENST00000321945	NM_139076.2	382	gCa/gGa																																													NEWRECORD																																		
CD276	80381	MSKCC	GRCh37	15	74003504	74003504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	48	680	0	ENST00000318443.5:c.1575C>A	p.Ser525Arg	p.S525R	ENST00000318443	NM_001024736.1	525	agC/agA																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67662321	67662321	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	108	595	0	ENST00000264010.4:c.1567T>G	p.Tyr523Asp	p.Y523D	ENST00000264010	NM_006565.3	523	Tac/Gac																																													NEWRECORD																																		
FAM175A	84142	MSKCC	GRCh37	4	84383703	84383703	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	12	573	2	ENST00000321945.7:c.1149del	p.Met385Ter	p.M385*	ENST00000321945	NM_139076.2	383	tcC/tc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	68	370	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	107	368	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56178577	56178579	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0006219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	56	500	0	ENST00000399503.3:c.3560_3562del	p.Glu1187del	p.E1187del	ENST00000399503	NM_005921.1	1184	GAA/-																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42794524	42794524	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143443453		P-0006219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	165	550	0	ENST00000575354.2:c.1604C>T	p.Ser535Phe	p.S535F	ENST00000575354	NM_015125.3	535	tCt/tTt																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70354235	70354235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	195	659	0	ENST00000374080.3:c.4646G>A	p.Arg1549His	p.R1549H	ENST00000374080		1549	cGc/cAc																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67589583	67589584	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACATGA			P-0006219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	63	332	0	ENST00000274335.5:c.1348_1353dup	p.His450_Glu451dup	p.H450_E451dup	ENST00000274335		450	tta/ttACATGAa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	70	540	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578518	7578518	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs28934875		P-0014914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	126	1047	0	ENST00000269305.4:c.412G>C	p.Ala138Pro	p.A138P	ENST00000269305	NM_001126112.2	138	Gcc/Ccc																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30713675	30713676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	58	479	0	ENST00000359013.4:c.1076dup	p.Glu360GlyfsTer30	p.E360Gfs*30	ENST00000359013	NM_001024847.2	359	cag/cAag																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66270108	66270108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756653935		P-0014914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	47	535	1	ENST00000273854.3:c.1774G>A	p.Val592Ile	p.V592I	ENST00000273854	NM_004439.5	592	Gtc/Atc																																													NEWRECORD																																		
MYD88	4615	MSKCC	GRCh37	3	38181890	38181890	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	96	366	1	ENST00000396334.3:c.514G>T	p.Glu172Ter	p.E172*	ENST00000396334	NM_002468.4	172	Gag/Tag																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55956149	55956149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	101	610	1	ENST00000263923.4:c.3166G>A	p.Asp1056Asn	p.D1056N	ENST00000263923	NM_002253.2	1056	Gat/Aat																																													NEWRECORD																																		
SDHA	6389	MSKCC	GRCh37	5	233715	233715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	123	295	0	ENST00000264932.6:c.1019G>A	p.Arg340Lys	p.R340K	ENST00000264932	NM_004168.2	340	aGa/aAa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112154992	112154992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	103	539	0	ENST00000257430.4:c.1263G>T	p.Trp421Cys	p.W421C	ENST00000257430	NM_000038.5	421	tgG/tgT																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180056396	180056396	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148616009		P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	126	367	0	ENST00000261937.6:c.848G>A	p.Arg283His	p.R283H	ENST00000261937	NM_182925.4	283	cGc/cAc																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81386569	81386569	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	68	509	0	ENST00000222390.5:c.418G>T	p.Val140Leu	p.V140L	ENST00000222390	NM_000601.4	140	Gta/Tta																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8339023	8339023	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	94	429	0	ENST00000356435.5:c.5278G>T	p.Ala1760Ser	p.A1760S	ENST00000356435		1760	Gca/Tca																																													NEWRECORD																																		
RAD52	5893	MSKCC	GRCh37	12	1025941	1025941	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1095	205	692	0	ENST00000358495.3:c.589G>C	p.Glu197Gln	p.E197Q	ENST00000358495	NM_134424.2	197	Gaa/Caa																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57865598	57865598	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1348	263	938	0	ENST00000228682.2:c.3075G>C	p.Leu1025Phe	p.L1025F	ENST00000228682	NM_005269.2	1025	ttG/ttC																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28886201	28886201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	91	578	0	ENST00000282397.4:c.3421C>A	p.Pro1141Thr	p.P1141T	ENST00000282397	NM_002019.4	1141	Cca/Aca																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123205112	123205112	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	90	793	0	ENST00000218089.9:c.2472G>T	p.Glu824Asp	p.E824D	ENST00000218089	NM_001042749.1	824	gaG/gaT																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32163619	32163620	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	75	358	0	ENST00000375023.3:c.5606dup	p.Arg1871SerfsTer45	p.R1871Sfs*45	ENST00000375023	NM_004557.3	1869	ggc/ggGc																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8521463	8521463	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	190	444	0	ENST00000356435.5:c.775del	p.Ala259ProfsTer9	p.A259Pfs*9	ENST00000356435		259	Gcc/cc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			592	389	275	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0001769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			713	217	276	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																													NEWRECORD																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			430	177	301	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0001769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			805	201	210	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			571	465	284	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153247250	153247250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			673	207	306	2	ENST00000281708.4:c.1552G>A	p.Ala518Thr	p.A518T	ENST00000281708	NM_033632.3	518	Gca/Aca																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157222555	157222555	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			891	234	265	0	ENST00000346085.5:c.1822C>T	p.Gln608Ter	p.Q608*	ENST00000346085	NM_020732.3	608	Cag/Tag																																													NEWRECORD																																		
TGFBR1	7046	MSKCC	GRCh37	9	101907164	101907164	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			267	261	177	0	ENST00000374994.4:c.1124C>G	p.Thr375Arg	p.T375R	ENST00000374994	NM_004612.2	375	aCa/aGa																																													NEWRECORD																																		
GREM1	26585	MSKCC	GRCh37	15	33022961	33022961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			439	180	213	0	ENST00000300177.4:c.70G>A	p.Gly24Arg	p.G24R	ENST00000300177	NM_001191322.1	24	Ggg/Agg																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007681	45007681	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			701	247	236	0	ENST00000558401.1:c.128T>G	p.Leu43Arg	p.L43R	ENST00000558401	NM_004048.2	43	cTg/cGg																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2138570	2138570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			296	99	242	0	ENST00000219476.3:c.5383C>T	p.Arg1795Cys	p.R1795C	ENST00000219476	NM_000548.3	1795	Cgc/Tgc																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70118996	70118996	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			492	239	270	0	ENST00000245479.2:c.568G>T	p.Glu190Ter	p.E190*	ENST00000245479	NM_000346.3	190	Gag/Tag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174005	112174006	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	120	246	0	ENST00000257430.4:c.2716dup	p.Ser906PhefsTer6	p.S906Ffs*6	ENST00000257430	NM_000038.5	905	agt/agTt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	97	383	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156851381	156851381	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	83	410	0	ENST00000524377.1:c.2338C>G	p.Arg780Gly	p.R780G	ENST00000524377	NM_002529.3	780	Cgg/Ggg																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29498082	29498082	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	102	473	0	ENST00000389048.3:c.1924G>T	p.Asp642Tyr	p.D642Y	ENST00000389048	NM_004304.4	642	Gac/Tac																																													NEWRECORD																																		
MRE11A	4361	MSKCC	GRCh37	11	94163100	94163100	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1308	133	591	0	ENST00000323929.3:c.2047G>C	p.Gly683Arg	p.G683R	ENST00000323929	NM_005591.3	683	Ggg/Cgg																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3779451	3779451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	130	547	1	ENST00000262367.5:c.5597G>T	p.Arg1866Leu	p.R1866L	ENST00000262367	NM_004380.2	1866	cGc/cTc																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10610298	10610298	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	115	555	1	ENST00000171111.5:c.412G>T	p.Glu138Ter	p.E138*	ENST00000171111	NM_203500.1	138	Gaa/Taa																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1220492	1220492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	101	445	1	ENST00000326873.7:c.587del	p.Gly196AlafsTer91	p.G196Afs*91	ENST00000326873	NM_000455.4	195	ctG/ct																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11136170	11136170	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	94	473	0	ENST00000344626.4:c.3155del	p.Phe1052SerfsTer54	p.F1052Sfs*54	ENST00000344626	NM_003072.3	1052	Ttc/tc																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TT			P-0011298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	67	232	0	ENST00000304494.5:c.322delinsAA	p.Asp108LysfsTer12	p.D108Kfs*12	ENST00000304494	NM_000077.4	108	Gat/AAat																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	180	330	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	94120381	94120381	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	271	479	0	ENST00000369303.4:c.670T>C	p.Phe224Leu	p.F224L	ENST00000369303	NM_004440.3	224	Ttt/Ctt																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151835933	151835933	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	126	353	0	ENST00000262189.6:c.14591G>C	p.Arg4864Thr	p.R4864T	ENST00000262189	NM_170606.2	4864	aGa/aCa																																													NEWRECORD																																		
MAP2K1	5604	MSKCC	GRCh37	15	66729175	66729175	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	181	265	0	ENST00000307102.5:c.383G>T	p.Gly128Val	p.G128V	ENST00000307102	NM_002755.3	128	gGc/gTc																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2124290	2124290	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	228	397	0	ENST00000219476.3:c.2445G>T	p.Met815Ile	p.M815I	ENST00000219476	NM_000548.3	815	atG/atT																																													NEWRECORD																																		
GPS2	2874	MSKCC	GRCh37	17	7216889	7216889	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0007978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	289	484	0	ENST00000380728.2:c.632G>C	p.Arg211Thr	p.R211T	ENST00000380728		211	aGa/aCa																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1222983	1222983	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0007978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	74	174	0	ENST00000326873.7:c.921-1G>A		p.X307_splice	ENST00000326873	NM_000455.4	307																																														NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10600416	10600416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	215	423	0	ENST00000171111.5:c.1439G>T	p.Gly480Val	p.G480V	ENST00000171111	NM_203500.1	480	gGg/gTg																																													NEWRECORD																																		
SRC	6714	MSKCC	GRCh37	20	36024656	36024656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	235	374	0	ENST00000358208.4:c.645C>G	p.Phe215Leu	p.F215L	ENST00000358208		215	ttC/ttG																																													NEWRECORD																																		
TOP1	7150	MSKCC	GRCh37	20	39741500	39741500	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	158	279	0	ENST00000361337.2:c.1387G>C	p.Glu463Gln	p.E463Q	ENST00000361337	NM_003286.2	463	Gaa/Caa																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2226617	2226618	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	130	272	0	ENST00000398665.3:c.4100dup	p.Leu1368ProfsTer170	p.L1368Pfs*170	ENST00000398665	NM_032482.2	1366	cct/ccTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	210	484	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																													NEWRECORD																																		
LATS2	26524	MSKCC	GRCh37	13	21562482	21562483	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGGCG	rs550642106		P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	10	55	1	ENST00000382592.4:c.1431_1436dup	p.Pro479_Ala480dup	p.P479_A480dup	ENST00000382592	NM_014572.2	479	ccg/ccCGCCCCg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175324	112175324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	39	270	1	ENST00000257430.4:c.4033G>T	p.Glu1345Ter	p.E1345*	ENST00000257430	NM_000038.5	1345	Gaa/Taa																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48027998	48027998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	110	372	0	ENST00000234420.5:c.2876G>A	p.Arg959His	p.R959H	ENST00000234420	NM_000179.2	959	cGc/cAc																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56183272	56183272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	88	290	0	ENST00000399503.3:c.4182G>T	p.Arg1394Ser	p.R1394S	ENST00000399503	NM_005921.1	1394	agG/agT																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174763	112174763	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	63	446	0	ENST00000257430.4:c.3472A>T	p.Arg1158Ter	p.R1158*	ENST00000257430	NM_000038.5	1158	Aga/Tga																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106509458	106509458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	33	375	0	ENST00000359195.3:c.1452G>A	p.Met484Ile	p.M484I	ENST00000359195	NM_002649.2	484	atG/atA																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971051	21971051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	27	199	0	ENST00000304494.5:c.307C>T	p.Arg103Trp	p.R103W	ENST00000304494	NM_000077.4	103	Cgg/Tgg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49445203	49445203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	71	224	0	ENST00000301067.7:c.2263C>T	p.Arg755Trp	p.R755W	ENST00000301067	NM_003482.3	755	Cgg/Tgg																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48953781	48953781	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	42	319	0	ENST00000267163.4:c.1384A>G	p.Lys462Glu	p.K462E	ENST00000267163	NM_000321.2	462	Aaa/Gaa																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103528200	103528200	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			122	12	124	1	ENST00000355739.4:c.3508G>T	p.Gly1170Trp	p.G1170W	ENST00000355739	NM_000123.3	1170	Ggg/Tgg																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11217310	11217330	+	inframe_deletion	In_Frame_Del	DEL	CCACTCGTGCAGTTTCTCATA	CCACTCGTGCAGTTTCTCATA	-			P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	123	422	0	ENST00000361445.4:c.4348_4368del	p.Tyr1450_Trp1456del	p.Y1450_W1456del	ENST00000361445	NM_004958.3	1450	TATGAGAAACTGCACGAGTGG/-																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0014832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1270	297	827	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15271746	15271747	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	79	782	0	ENST00000263388.2:c.6692dupC	p.Ala2233GlyfsTer9	p.A2233Gfs*9	ENST00000263388	NM_000435.2	2231	cca/ccCa																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63851423	63851439	+	frameshift_variant	Frame_Shift_Del	DEL	AGACCCACCATGGCCAA	AGACCCACCATGGCCAA	-			P-0014832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	42	382	0	ENST00000279873.7:c.2203_2219del	p.Thr735HisfsTer2	p.T735Hfs*2	ENST00000279873	NM_032199.2	734	cAGACCCACCATGGCCAA/c																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56492882	56492891	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCATCAGC	AGCCATCAGC	-			P-0014832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	111	288	0	ENST00000407977.2:c.48_57delGCTGATGGCT	p.Leu17ProfsTer31	p.L17Pfs*31	ENST00000407977		16	ctGCTGATGGCT/ct																																													NEWRECORD																																		
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520009		P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	36	301	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																													NEWRECORD																																		
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	39	316	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	676	689	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519816		P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	26	507	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																													NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242793373	242793373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	32	450	0	ENST00000334409.5:c.704C>T	p.Pro235Leu	p.P235L	ENST00000334409	NM_005018.2	235	cCg/cTg																																													NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58740432	58740432	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1294	80	827	0	ENST00000305921.3:c.1337C>G	p.Ser446Ter	p.S446*	ENST00000305921	NM_003620.3	446	tCa/tGa																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23652445	23652445	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	126	575	0	ENST00000261584.4:c.34G>T	p.Glu12Ter	p.E12*	ENST00000261584	NM_024675.3	12	Gag/Tag																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106157812	106157812	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	100	340	0	ENST00000380013.4:c.2713G>C	p.Asp905His	p.D905H	ENST00000380013	NM_001127208.2	905	Gat/Cat																																													NEWRECORD																																		
IKBKE	9641	MSKCC	GRCh37	1	206649544	206649544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	137	282	0	ENST00000367120.3:c.379C>T	p.Arg127Trp	p.R127W	ENST00000367120	NM_014002.3	127	Cgg/Tgg																																													NEWRECORD																																		
AKT3	10000	MSKCC	GRCh37	1	243668570	243668570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1443	81	431	0	ENST00000263826.5:c.1421C>T	p.Ser474Phe	p.S474F	ENST00000263826	NM_005465.4	474	tCt/tTt																																													NEWRECORD																																		
RAF1	5894	MSKCC	GRCh37	3	12653541	12653541	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	137	553	0	ENST00000251849.4:c.228G>C	p.Met76Ile	p.M76I	ENST00000251849	NM_002880.3	76	atG/atC																																													NEWRECORD																																		
GSK3B	2932	MSKCC	GRCh37	3	119545703	119545703	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	90	292	0	ENST00000316626.5:c.1235-1G>A		p.X412_splice	ENST00000316626		412																																														NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185181423	185181423	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	163	543	0	ENST00000265026.3:c.1364T>C	p.Ile455Thr	p.I455T	ENST00000265026	NM_004721.4	455	aTt/aCt																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66467708	66467708	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	520	410	0	ENST00000273854.3:c.561T>A	p.Asp187Glu	p.D187E	ENST00000273854	NM_004439.5	187	gaT/gaA																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187630744	187630744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1222	199	742	0	ENST00000441802.2:c.238G>A	p.Glu80Lys	p.E80K	ENST00000441802	NM_005245.3	80	Gaa/Aaa																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149514340	149514340	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	125	607	0	ENST00000261799.4:c.604G>C	p.Asp202His	p.D202H	ENST00000261799	NM_002609.3	202	Gat/Cat																																													NEWRECORD																																		
HIST1H3J	8356	MSKCC	GRCh37	6	27858252	27858252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1696	217	1112	1	ENST00000359303.2:c.319G>A	p.Asp107Asn	p.D107N	ENST00000359303	NM_003535.2	107	Gac/Aac																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117609711	117609711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	144	431	1	ENST00000368508.3:c.6988G>A	p.Glu2330Lys	p.E2330K	ENST00000368508	NM_002944.2	2330	Gaa/Aaa																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49427912	49427912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1313	147	647	0	ENST00000301067.7:c.10678G>A	p.Asp3560Asn	p.D3560N	ENST00000301067	NM_003482.3	3560	Gat/Aat																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72831644	72831644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	60	799	0	ENST00000268489.5:c.4937C>T	p.Ser1646Phe	p.S1646F	ENST00000268489	NM_006885.3	1646	tCc/tTc																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72984813	72984813	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	136	677	0	ENST00000268489.5:c.2771C>G	p.Ser924Ter	p.S924*	ENST00000268489	NM_006885.3	924	tCa/tGa																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89350198	89350198	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	180	1069	0	ENST00000301030.4:c.2752G>C	p.Glu918Gln	p.E918Q	ENST00000301030	NM_001256183.1	918	Gag/Cag																																													NEWRECORD																																		
ERCC2	2068	MSKCC	GRCh37	19	45864890	45864890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	131	575	0	ENST00000391945.4:c.1129G>A	p.Glu377Lys	p.E377K	ENST00000391945	NM_000400.3	377	Gaa/Aaa																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70343490	70343490	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	58	838	0	ENST00000374080.3:c.1664C>A	p.Ser555Tyr	p.S555Y	ENST00000374080		555	tCt/tAt																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68842455	68842456	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	295	414	0	ENST00000261769.5:c.521dupA	p.Asn174LysfsTer25	p.N174Kfs*25	ENST00000261769	NM_004360.3	172	-/A																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717713	89717714	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0013631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	88	400	0	ENST00000371953.3:c.739_740dup	p.Leu247PhefsTer10	p.L247Ffs*10	ENST00000371953	NM_000314.4	246	-/TT																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720820	89720838	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTTGACAAAGCAAATAA	ATCTTGACAAAGCAAATAA	-			P-0013631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	13	182	0	ENST00000371953.3:c.972_990del	p.Asp324GlufsTer14	p.D324Efs*14	ENST00000371953	NM_000314.4	324	gATCTTGACAAAGCAAATAAa/ga																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135782702	135782702	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	108	616	2	ENST00000298552.3:c.1319A>G	p.Asn440Ser	p.N440S	ENST00000298552	NM_001162426.1	440	aAt/aGt																																													NEWRECORD																																		
CRLF2	64109	MSKCC	GRCh37	X	1314896	1314896	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0013631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	97	504	0				ENST00000381566																																																NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28929495		P-0000630-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			505	100	379	0	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000630-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			114	26	148	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55241677	55241677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000630-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			588	109	443	0	ENST00000275493.2:c.2125G>A	p.Glu709Lys	p.E709K	ENST00000275493	NM_005228.3	709	Gaa/Aaa																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76937179	76937179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000630-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			694	39	1224	0	ENST00000373344.5:c.3569G>A	p.Arg1190Lys	p.R1190K	ENST00000373344	NM_000489.3	1190	aGa/aAa																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47059128	47059129	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0000630-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	173	521	0	ENST00000409792.3:c.7532dupA	p.Leu2512AlafsTer8	p.L2512Afs*8	ENST00000409792	NM_014159.6	2511	aag/aaAg																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005897-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			555	129	511	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52712537	52712544	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAGCTC	AAGAGCTC	-			P-0005897-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			608	415	738	0	ENST00000394830.3:c.208_215del	p.Glu70HisfsTer2	p.E70Hfs*2	ENST00000394830	NM_018313.4	70	GAGCTCTTc/c																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2959064	2959064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005897-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1150	216	506	0	ENST00000396946.4:c.2452C>T	p.Arg818Trp	p.R818W	ENST00000396946	NM_032415.4	818	Cgg/Tgg																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18573874	18573874	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0005897-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			438	106	454	0	ENST00000266497.5:c.2193-1G>C		p.X731_splice	ENST00000266497		731																																														NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28636112	28636112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005897-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			861	164	616	0	ENST00000241453.7:c.260C>T	p.Ala87Val	p.A87V	ENST00000241453	NM_004119.2	87	gCt/gTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7576918	7576919	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005897-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			673	237	541	0	ENST00000269305.4:c.927dup	p.Asn310GlnfsTer27	p.N310Qfs*27	ENST00000269305	NM_001126112.2	309	-/C																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0014769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	157	621	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39933593	39933594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	82	371	0	ENST00000378444.4:c.1005dup	p.Ser336LeufsTer45	p.S336Lfs*45	ENST00000378444	NM_001123385.1	335	-/C																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0014769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	97	466	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	46	380	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0003130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	124	191	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0003130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	19	317	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs879255270		P-0003130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	116	283	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																													NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1808979	1808979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	69	217	0	ENST00000260795.2:c.2411C>T	p.Ser804Leu	p.S804L	ENST00000260795		804	tCg/tTg																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63554665	63554665	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	112	197	0	ENST00000307078.5:c.74C>G	p.Pro25Arg	p.P25R	ENST00000307078	NM_004655.3	25	cCa/cGa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175465	112175466	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	AA			P-0003130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	32	301	0	ENST00000257430.4:c.4174_4175insAA	p.Ser1392Ter	p.S1392*	ENST00000257430	NM_000038.5	1392	tca/tAAca																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27087503	27087503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	245	618	2	ENST00000324856.7:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000324856	NM_006015.4	693	Cga/Tga																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37881002	37881003	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTCCCCA			P-0006376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1041	436	760	1	ENST00000269571.5:c.2332_2340dupGGCTCCCCA	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	-/GGCTCCCCA																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29562734	29562734	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	278	665	1	ENST00000358273.4:c.3814C>T	p.Gln1272Ter	p.Q1272*	ENST00000358273	NM_001042492.2	1272	Cag/Tag																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023830	27023831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	66	594	0	ENST00000324856.7:c.941dupG	p.Asp315ArgfsTer85	p.D315Rfs*85	ENST00000324856	NM_006015.4	312	-/G																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29508508	29508509	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0006376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	234	734	0	ENST00000358273.4:c.654+2dupT		p.X218_splice	ENST00000358273	NM_001042492.2	218																																														NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	155	354	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89259563	89259563	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	68	252	0	ENST00000336596.2:c.707A>G	p.Glu236Gly	p.E236G	ENST00000336596	NM_005233.5	236	gAg/gGg																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18439864	18439864	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0012065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	133	293	0	ENST00000266497.5:c.761+1G>A		p.X254_splice	ENST00000266497		254																																														NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10610285	10610285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	172	429	0	ENST00000171111.5:c.425C>T	p.Thr142Met	p.T142M	ENST00000171111	NM_203500.1	142	aCg/aTg																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1207090	1207091	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	AG			P-0012065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	156	423	0	ENST00000326873.7:c.179_180insGA	p.Tyr60Ter	p.Y60*	ENST00000326873	NM_000455.4	60	tac/tAGac																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	321	169	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061463	38061463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	217	264	0	ENST00000250448.2:c.526A>G	p.Ile176Val	p.I176V	ENST00000250448	NM_004496.3	176	Atc/Gtc																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37627889	37627889	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	376	438	1	ENST00000447079.4:c.1804C>T	p.Gln602Ter	p.Q602*	ENST00000447079	NM_015083.1	602	Cag/Tag																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115117409	115117410	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	301	299	0	ENST00000257566.3:c.764dup	p.Arg256LysfsTer4	p.R256Kfs*4	ENST00000257566	NM_016569.3	255	gta/gtTa																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25990499	25990503	+	frameshift_variant	Frame_Shift_Del	DEL	AGTAA	AGTAA	-			P-0003522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	289	347	0	ENST00000435504.4:c.724_728del	p.Leu242ArgfsTer11	p.L242Rfs*11	ENST00000435504		242	TTACTa/a																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111499	8111500	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	259	569	0	ENST00000346208.3:c.987dup	p.Arg330GlufsTer22	p.R330Efs*22	ENST00000346208		329	agg/aGgg																																													NEWRECORD																																		
SDHAF2	54949	MSKCC	GRCh37	11	61205157	61205157	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144867876		P-0005469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	235	498	1	ENST00000301761.2:c.97C>T	p.Arg33Cys	p.R33C	ENST00000301761	NM_017841.2	33	Cgc/Tgc																																													NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0004195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	90	281	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591924	48591924	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	105	356	0	ENST00000342988.3:c.1087T>C	p.Cys363Arg	p.C363R	ENST00000342988	NM_005359.5	363	Tgt/Cgt																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139413225	139413225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	76	393	0	ENST00000277541.6:c.917G>C	p.Cys306Ser	p.C306S	ENST00000277541	NM_017617.3	306	tGc/tCc																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99465600	99465600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	97	239	0	ENST00000268035.6:c.2425G>A	p.Glu809Lys	p.E809K	ENST00000268035	NM_000875.3	809	Gag/Aag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578410	7578410	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	63	254	1	ENST00000269305.4:c.520A>G	p.Arg174Gly	p.R174G	ENST00000269305	NM_001126112.2	174	Agg/Ggg																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	168	426	0	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	53	512	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1220443	1220443	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786202466		P-0004970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	74	533	0	ENST00000326873.7:c.536C>T	p.Pro179Leu	p.P179L	ENST00000326873	NM_000455.4	179	cCg/cTg																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50906436	50906436	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	203	547	1	ENST00000440232.2:c.1097C>A	p.Ala366Asp	p.A366D	ENST00000440232	NM_002691.3	366	gCc/gAc																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47044967	47044967	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	71	271	0	ENST00000329236.7:c.2059C>T	p.Arg687Ter	p.R687*	ENST00000329236	NM_001204466.1	687	Cga/Tga																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56492898	56492899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0004970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	20	194	0	ENST00000407977.2:c.39_40dup	p.Pro14ArgfsTer5	p.P14Rfs*5	ENST00000407977		14	ccc/cGCcc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0008173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	320	431	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	139	232	1	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89259357	89259357	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1203	75	596	0	ENST00000336596.2:c.501G>T	p.Glu167Asp	p.E167D	ENST00000336596	NM_005233.5	167	gaG/gaT																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49431777	49431777	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	191	317	0	ENST00000301067.7:c.9362A>G	p.Lys3121Arg	p.K3121R	ENST00000301067	NM_003482.3	3121	aAg/aGg																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0006912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	342	397	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53250046	53250047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1072	272	515	0	ENST00000375401.3:c.202dup	p.Arg68ProfsTer7	p.R68Pfs*7	ENST00000375401	NM_004187.3	68	cga/cCga																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579408	7579430	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGCCAGGAGGGGGCTGGTG	CAGGGGCCAGGAGGGGGCTGGTG	-			P-0006912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	163	385	0	ENST00000269305.4:c.257_279delCACCAGCCCCCTCCTGGCCCCTG	p.Ala86ValfsTer55	p.A86Vfs*55	ENST00000269305	NM_001126112.2	86	gCACCAGCCCCCTCCTGGCCCCTG/g																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0005069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	76	810	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																													NEWRECORD																																		
MST1	4485	MSKCC	GRCh37	3	49722905	49722906	+	inframe_insertion,splice_region_variant	In_Frame_Ins	INS	-	-	GGG			P-0005069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	43	198	7	ENST00000449682.2:c.1419_1421dup	p.Pro474dup	p.P474dup	ENST00000449682	NM_020998.3	474	cca/ccCCCa																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64575533	64575533	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	73	822	0	ENST00000337652.1:c.499G>T	p.Val167Phe	p.V167F	ENST00000337652	NM_130803.2	167	Gtt/Ttt																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116412044	116412047	+	splice_donor_variant,intron_variant	Splice_Site	DEL	GTAT	GTAT	AG			P-0005069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	142	476	0	ENST00000397752.3:c.3028+1_3028+4delinsAG		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																														NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	311	339	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55133805	55133805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1241	178	654	1	ENST00000257290.5:c.1018C>T	p.Arg340Trp	p.R340W	ENST00000257290	NM_006206.4	340	Cgg/Tgg																																													NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121913482		P-0009160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1133	85	258	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1503	433	581	0	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2134448	2134448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1331	400	609	3	ENST00000219476.3:c.4225C>T	p.Arg1409Trp	p.R1409W	ENST00000219476	NM_000548.3	1409	Cgg/Tgg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	112	748	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11168340	11168340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	54	421	0	ENST00000361445.4:c.7532G>A	p.Arg2511Gln	p.R2511Q	ENST00000361445	NM_004958.3	2511	cGg/cAg																																													NEWRECORD																																		
PRKD1	5587	MSKCC	GRCh37	14	30066924	30066924	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	64	495	0	ENST00000331968.5:c.2207A>G	p.Glu736Gly	p.E736G	ENST00000331968	NM_002742.2	736	gAg/gGg																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061517	38061517	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	25	404	0	ENST00000250448.2:c.472G>T	p.Asp158Tyr	p.D158Y	ENST00000250448	NM_004496.3	158	Gac/Tac																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68845619	68845620	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGA			P-0014573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	89	609	0	ENST00000261769.5:c.868_871dup	p.Asp291GlyfsTer3	p.D291Gfs*3	ENST00000261769	NM_004360.3	289	gcg/gCGGAcg																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55233023	55233023	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	49	535	0	ENST00000275493.2:c.1773C>A	p.Cys591Ter	p.C591*	ENST00000275493	NM_005228.3	591	tgC/tgA																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002399-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			640	169	387	0	ENST00000346208.3:c.1220_1221insA	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcAg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	431	563	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																														NEWRECORD																																		
RFWD2	64326	MSKCC	GRCh37	1	176054923	176054923	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	137	484	0	ENST00000367669.3:c.1130C>G	p.Ser377Cys	p.S377C	ENST00000367669	NM_022457.5	377	tCt/tGt																																													NEWRECORD																																		
REL	5966	MSKCC	GRCh37	2	61144116	61144116	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs140162786		P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	148	502	0	ENST00000295025.8:c.499C>G	p.Leu167Val	p.L167V	ENST00000295025	NM_002908.2	167	Ctt/Gtt																																													NEWRECORD																																		
RAF1	5894	MSKCC	GRCh37	3	12645683	12645683	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	169	513	0	ENST00000251849.4:c.786T>A	p.Asn262Lys	p.N262K	ENST00000251849	NM_002880.3	262	aaT/aaA																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89528545	89528545	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	80	310	0	ENST00000336596.2:c.2847-2A>T		p.X949_splice	ENST00000336596	NM_005233.5	949																																														NEWRECORD																																		
SOX2	6657	MSKCC	GRCh37	3	181430201	181430201	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	67	169	0	ENST00000325404.1:c.53C>A	p.Ser18Ter	p.S18*	ENST00000325404	NM_003106.3	18	tCg/tAg																																													NEWRECORD																																		
SDHA	6389	MSKCC	GRCh37	5	226087	226087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	77	225	0	ENST00000264932.6:c.546G>T	p.Lys182Asn	p.K182N	ENST00000264932	NM_004168.2	182	aaG/aaT																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56160566	56160566	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	78	332	0	ENST00000399503.3:c.840G>T	p.Gln280His	p.Q280H	ENST00000399503	NM_005921.1	280	caG/caT																																													NEWRECORD																																		
HLA-A	3105	MSKCC	GRCh37	6	29910686	29910686	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	183	538	0	ENST00000376809.5:c.226A>G	p.Ile76Val	p.I76V	ENST00000376809	NM_002116.7	76	Ata/Gta																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32180921	32180921	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	117	365	0	ENST00000375023.3:c.2429G>C	p.Cys810Ser	p.C810S	ENST00000375023	NM_004557.3	810	tGt/tCt																																													NEWRECORD																																		
DAXX	1616	MSKCC	GRCh37	6	33287355	33287355	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	225	497	0	ENST00000374542.5:c.1742C>G	p.Ser581Cys	p.S581C	ENST00000374542	NM_001141970.1	581	tCt/tGt																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117674207	117674207	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	160	597	0	ENST00000368508.3:c.4267G>T	p.Ala1423Ser	p.A1423S	ENST00000368508	NM_002944.2	1423	Gcc/Tcc																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152201885	152201885	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	75	333	0	ENST00000206249.3:c.739G>T	p.Glu247Ter	p.E247*	ENST00000206249	NM_000125.3	247	Gaa/Taa																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971149	21971149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	157	112	0	ENST00000304494.5:c.209C>T	p.Pro70Leu	p.P70L	ENST00000304494	NM_000077.4	70	cCc/cTc																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56482382	56482382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	176	571	0	ENST00000267101.3:c.930G>A	p.Met310Ile	p.M310I	ENST00000267101	NM_001982.3	310	atG/atA																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	29008323	29008323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	169	462	0	ENST00000282397.4:c.548G>A	p.Arg183His	p.R183H	ENST00000282397	NM_002019.4	183	cGc/cAc																																													NEWRECORD																																		
TSHR	7253	MSKCC	GRCh37	14	81610324	81610324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	246	399	0	ENST00000298171.2:c.1922C>T	p.Ser641Leu	p.S641L	ENST00000298171	NM_000369.2	641	tCa/tTa																																													NEWRECORD																																		
ALOX12B	242	MSKCC	GRCh37	17	7979979	7979979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	93	261	1	ENST00000319144.4:c.1358C>T	p.Ala453Val	p.A453V	ENST00000319144	NM_001139.2	453	gCc/gTc																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41419903	41419903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	221	541	2	ENST00000373198.4:c.418G>A	p.Gly140Arg	p.G140R	ENST00000373198	NM_133170.3	140	Ggg/Agg																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66765700	66765700	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	348	683	0	ENST00000374690.3:c.712G>T	p.Glu238Ter	p.E238*	ENST00000374690	NM_000044.3	238	Gag/Tag																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76938462	76938462	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	97	536	0	ENST00000373344.5:c.2286G>C	p.Lys762Asn	p.K762N	ENST00000373344	NM_000489.3	762	aaG/aaC																																													NEWRECORD																																		
BTK	695	MSKCC	GRCh37	X	100609618	100609618	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	736	878	0	ENST00000308731.7:c.1631G>T	p.Arg544Met	p.R544M	ENST00000308731	NM_000061.2	544	aGg/aTg																																													NEWRECORD																																		
DNAJB1	3337	MSKCC	GRCh37	19	14628912	14629036	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCAAAAGGCGGGGCCGCGCCCCTGGCCGCGAGCACACACCTTCCTCCCCGTAGCGGTCGAAGATCTCGCGCTTGCGCGGGTCGCTGAGCACGTCGTAGGCCTCAGCGATCTCCTTGAACTTCTCC	TCAAAAGGCGGGGCCGCGCCCCTGGCCGCGAGCACACACCTTCCTCCCCGTAGCGGTCGAAGATCTCGCGCTTGCGCGGGTCGCTGAGCACGTCGTAGGCCTCAGCGATCTCCTTGAACTTCTCC	-			P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	230	372	0	ENST00000254322.2:c.126_211+39del		p.X42_splice	ENST00000254322	NM_006145.1	42																																														NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187539111	187539125	+	inframe_deletion	In_Frame_Del	DEL	GGTCAAGTTCCTTTA	GGTCAAGTTCCTTTA	-			P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	158	550	1	ENST00000441802.2:c.8615_8629del	p.Leu2872_His2877delinsTyr	p.L2872_H2877delinsY	ENST00000441802	NM_005245.3	2872	tTAAAGGAACTTGACCat/tat																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115112571	115112572	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	74	304	0	ENST00000257566.3:c.1168dup	p.Cys390LeufsTer17	p.C390Lfs*17	ENST00000257566	NM_016569.3	390	tgc/tTgc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0003582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	60	281	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																													NEWRECORD																																		
MAP2K1	5604	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	129	272	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175191	112175192	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	64	176	0	ENST00000257430.4:c.3901dup	p.Thr1301AsnfsTer14	p.T1301Nfs*14	ENST00000257430	NM_000038.5	1300	-/A																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0003582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	73	379	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																													NEWRECORD																																		
FH	2271	MSKCC	GRCh37	1	241667364	241667364	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	57	485	0	ENST00000366560.3:c.1086A>T	p.Glu362Asp	p.E362D	ENST00000366560	NM_000143.3	362	gaA/gaT																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	58	261	1	ENST00000281708.4:c.1393C>A	p.Arg465Ser	p.R465S	ENST00000281708	NM_033632.3	465	Cgt/Agt																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139391848	139391848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	57	304	1	ENST00000277541.6:c.6343G>A	p.Glu2115Lys	p.E2115K	ENST00000277541	NM_017617.3	2115	Gag/Aag																																													NEWRECORD																																		
PHOX2B	8929	MSKCC	GRCh37	4	41750420	41750420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	74	269	0	ENST00000226382.2:c.208del	p.Leu70SerfsTer64	p.L70Sfs*64	ENST00000226382	NM_003924.3	70	Ctc/tc																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67457270	67457270	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	TTCCGA			P-0003582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	107	231	0	ENST00000327367.4:c.244delinsTTCCGA	p.Gly82PhefsTer36	p.G82Ffs*36	ENST00000327367	NM_005902.3	82	Ggg/TTCCGAgg																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	77	569	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41280768	41280768	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	18	482	0	ENST00000349496.5:c.2281G>C	p.Asp761His	p.D761H	ENST00000349496	NM_001904.3	761	Gac/Cac																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89259173	89259173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	17	475	1	ENST00000336596.2:c.317G>A	p.Cys106Tyr	p.C106Y	ENST00000336596	NM_005233.5	106	tGc/tAc																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142279194	142279194	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	18	639	0	ENST00000350721.4:c.1452T>A	p.Asn484Lys	p.N484K	ENST00000350721	NM_001184.3	484	aaT/aaA																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106157404	106157404	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	27	548	0	ENST00000380013.4:c.2305C>T	p.Gln769Ter	p.Q769*	ENST00000380013	NM_001127208.2	769	Cag/Tag																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151874751	151874751	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	19	395	0	ENST00000262189.6:c.7787G>T	p.Arg2596Leu	p.R2596L	ENST00000262189	NM_170606.2	2596	cGg/cTg																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103498619	103498619	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	26	582	0	ENST00000355739.4:c.3G>A	p.Met1?	p.M1?	ENST00000355739	NM_000123.3	1	atG/atA																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9892293	9892293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	10	489	0	ENST00000330684.3:c.2197G>T	p.Ala733Ser	p.A733S	ENST00000330684	NM_001134407.1	733	Gca/Tca																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578197	7578197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	75	766	0	ENST00000269305.4:c.652G>T	p.Val218Leu	p.V218L	ENST00000269305	NM_001126112.2	218	Gtg/Ttg																																													NEWRECORD																																		
PIK3R2	5296	MSKCC	GRCh37	19	18271779	18271779	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	29	509	0	ENST00000222254.8:c.466G>T	p.Asp156Tyr	p.D156Y	ENST00000222254	NM_005027.3	156	Gac/Tac																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50910642	50910642	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	28	893	1	ENST00000440232.2:c.1745C>G	p.Thr582Arg	p.T582R	ENST00000440232	NM_002691.3	582	aCg/aGg																																													NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31379489	31379489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	28	612	0	ENST00000328111.2:c.896G>T	p.Arg299Leu	p.R299L	ENST00000328111	NM_006892.3	299	cGa/cTa																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40733343	40733343	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	10	223	0	ENST00000373198.4:c.3463G>C	p.Val1155Leu	p.V1155L	ENST00000373198	NM_133170.3	1155	Gtg/Ctg																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70341493	70341493	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	35	847	1	ENST00000374080.3:c.928G>T	p.Asp310Tyr	p.D310Y	ENST00000374080		310	Gat/Tat																																													NEWRECORD																																		
IRF4	3662	MSKCC	GRCh37	6	394979	394980	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	27	312	0	ENST00000380956.4:c.376dup	p.Arg126LysfsTer5	p.R126Kfs*5	ENST00000380956	NM_001195286.1	125	-/A																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577061	7577062	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	88	892	0	ENST00000269305.4:c.876dup	p.Gly293ArgfsTer13	p.G293Rfs*13	ENST00000269305	NM_001126112.2	292	-/A																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37657668	37657668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	61	617	0	ENST00000447079.4:c.2585G>A	p.Cys862Tyr	p.C862Y	ENST00000447079	NM_015083.1	862	tGt/tAt																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2222530	2222530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	29	1242	1	ENST00000398665.3:c.3362C>T	p.Ser1121Leu	p.S1121L	ENST00000398665	NM_032482.2	1121	tCg/tTg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174757	112174757	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	42	315	0	ENST00000257430.4:c.3466G>T	p.Glu1156Ter	p.E1156*	ENST00000257430	NM_000038.5	1156	Gaa/Taa																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0014181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	163	703	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																													NEWRECORD																																		
MLL4	9757	MSKCC	GRCh37	19	36219676	36219676	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0014181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	64	861	0	ENST00000222270.7:c.4573G>A	p.Gly1525Arg	p.G1525R	ENST00000222270	NM_014727.1	1525	Gga/Aga																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	83	487	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0002960-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			648	117	451	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71008412	71008412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002960-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			773	108	570	0	ENST00000318789.4:c.2020G>A	p.Glu674Lys	p.E674K	ENST00000318789	NM_032682.5	674	Gag/Aag																																													NEWRECORD																																		
FOXL2	668	MSKCC	GRCh37	3	138664942	138664942	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002960-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			223	21	110	0	ENST00000330315.3:c.623A>G	p.Gln208Arg	p.Q208R	ENST00000330315	NM_023067.3	208	cAg/cGg																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81386537	81386537	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002960-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			358	42	446	0	ENST00000222390.5:c.450G>T	p.Gln150His	p.Q150H	ENST00000222390	NM_000601.4	150	caG/caT																																													NEWRECORD																																		
NFE2L2	4780	MSKCC	GRCh37	2	178098894	178098895	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002960-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			514	67	578	0	ENST00000397062.3:c.150dup	p.Gln51ThrfsTer5	p.Q51Tfs*5	ENST00000397062	NM_006164.4	50	-/A																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56436028	56436028	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002960-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			444	69	267	0	ENST00000407977.2:c.1109del	p.Pro370HisfsTer49	p.P370Hfs*49	ENST00000407977		370	cCa/ca																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0010268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	269	287	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	327	293	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0010268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	544	272	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187541541	187541541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	240	361	0	ENST00000441802.2:c.6199G>A	p.Val2067Met	p.V2067M	ENST00000441802	NM_005245.3	2067	Gtg/Atg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112170864	112170864	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0010268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	357	332	0	ENST00000257430.4:c.1958+2T>C		p.X653_splice	ENST00000257430	NM_000038.5	653																																														NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99460065	99460065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	508	332	1	ENST00000268035.6:c.2161G>A	p.Val721Ile	p.V721I	ENST00000268035	NM_000875.3	721	Gtc/Atc																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42794730	42794730	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143090600		P-0010268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	101	206	0	ENST00000575354.2:c.1810G>A	p.Glu604Lys	p.E604K	ENST00000575354	NM_015125.3	604	Gaa/Aaa																																													NEWRECORD																																		
BBC3	27113	MSKCC	GRCh37	19	47731419	47731419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	41	25	0	ENST00000449228.1:c.373G>A	p.Gly125Arg	p.G125R	ENST00000449228	NM_001127240.2	125	Gga/Aga																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76939921	76939922	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGTCCAACAAAGGCTCTGGGTGACGAATGT			P-0010268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	335	288	0	ENST00000373344.5:c.826_827insACATTCGTCACCCAGAGCCTTTGTTGGACT	p.Asp275_Leu276insTyrIleArgHisProGluProLeuLeuAsp	p.D275_L276insYIRHPEPLLD	ENST00000373344	NM_000489.3	276	ttg/tACATTCGTCACCCAGAGCCTTTGTTGGACTtg																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187534433	187534434	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	165	321	0	ENST00000441802.2:c.9292dup	p.Arg3098LysfsTer24	p.R3098Kfs*24	ENST00000441802	NM_005245.3	3098	agg/aAgg																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176638157	176638158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	155	227	0	ENST00000439151.2:c.2758dup	p.Ser920LysfsTer2	p.S920Kfs*2	ENST00000439151	NM_022455.4	919	-/A																																													NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50467799	50467799	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	90	498	0	ENST00000331340.3:c.1034G>T	p.Ser345Ile	p.S345I	ENST00000331340	NM_006060.4	345	aGc/aTc																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27102131	27102131	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	156	765	0	ENST00000324856.7:c.5059del	p.Ala1687HisfsTer2	p.A1687Hfs*2	ENST00000324856	NM_006015.4	1686	tGg/tg																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151879243	151879244	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	117	557	0	ENST00000262189.6:c.5701dup	p.Met1901AsnfsTer13	p.M1901Nfs*13	ENST00000262189	NM_170606.2	1901	atg/aAtg																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	361	536	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64575523	64575523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	231	483	0	ENST00000337652.1:c.509G>A	p.Cys170Tyr	p.C170Y	ENST00000337652	NM_130803.2	170	tGc/tAc																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36252856	36252857	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	105	280	0	ENST00000300305.3:c.505dupA	p.Arg169LysfsTer44	p.R169Kfs*44	ENST00000300305		169	aga/aAga																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	155	437	0	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37881002	37881003	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTCCCCA			P-0012081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	179	483	0	ENST00000269571.5:c.2332_2340dupGGCTCCCCA	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	-/GGCTCCCCA																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56155721	56155722	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0012081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	110	318	0	ENST00000399503.3:c.816_817del	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	271	agAAaa/agaa																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0006920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	378	497	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																													NEWRECORD																																		
PIK3CD	5293	MSKCC	GRCh37	1	9782651	9782651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	83	583	0	ENST00000377346.4:c.2413G>A	p.Gly805Arg	p.G805R	ENST00000377346	NM_005026.3	805	Ggg/Agg																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66467434	66467434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	120	362	0	ENST00000273854.3:c.835G>A	p.Glu279Lys	p.E279K	ENST00000273854	NM_004439.5	279	Gaa/Aaa																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67591113	67591113	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	139	378	0	ENST00000274335.5:c.1706A>G	p.Asp569Gly	p.D569G	ENST00000274335		569	gAc/gGc																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	29005380	29005380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	59	453	0	ENST00000282397.4:c.881G>T	p.Ser294Ile	p.S294I	ENST00000282397	NM_002019.4	294	aGt/aTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577521	7577521	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	357	524	0	ENST00000269305.4:c.760A>C	p.Ile254Leu	p.I254L	ENST00000269305	NM_001126112.2	254	Atc/Ctc																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29670111	29670111	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	157	491	0	ENST00000358273.4:c.7147A>T	p.Asn2383Tyr	p.N2383Y	ENST00000358273	NM_001042492.2	2383	Aac/Tac																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577500	7577514	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TGGAGTCTTCCAGTG	TGGAGTCTTCCAGTG	-			P-0006920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	341	473	0	ENST00000269305.4:c.767_781del	p.Thr256_Ser260del	p.T256_S260del	ENST00000269305	NM_001126112.2	256	aCACTGGAAGACTCCAgt/agt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0007168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	419	549	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138417865	138417865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	282	364	0	ENST00000289153.2:c.1654G>A	p.Glu552Lys	p.E552K	ENST00000289153	NM_006219.2	552	Gaa/Aaa																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212576822	212576822	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	244	355	0	ENST00000342788.4:c.1077T>A	p.Cys359Ter	p.C359*	ENST00000342788	NM_005235.2	359	tgT/tgA																																													NEWRECORD																																		
RYBP	23429	MSKCC	GRCh37	3	72427568	72427568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	140	323	0	ENST00000477973.2:c.920G>A	p.Asp308Asn	p.D308N	ENST00000477973	NM_012234.5	308	Gac/Aac																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114710597	114710597	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	513	651	0	ENST00000543371.1:c.82G>T	p.Glu28Ter	p.E28*	ENST00000543371	NM_001198531.1	28	Gag/Tag																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3824628	3824628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1607	171	457	1	ENST00000262367.5:c.2225G>T	p.Arg742Leu	p.R742L	ENST00000262367	NM_004380.2	742	cGt/cTt																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48593491	48593494	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0007168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	301	328	0	ENST00000342988.3:c.1245_1248del	p.Asp415GlufsTer20	p.D415Efs*20	ENST00000342988	NM_005359.5	414	ttAGAC/tt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173472	112173473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	611	436	0	ENST00000257430.4:c.2183dup	p.Asn728LysfsTer6	p.N728Kfs*6	ENST00000257430	NM_000038.5	727	-/A																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57861837	57861837	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs759838377		P-0012546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1227	448	996	2	ENST00000228682.2:c.1138C>T	p.Arg380Ter	p.R380*	ENST00000228682	NM_005269.2	380	Cga/Tga																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115965	8115966	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0012546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	91	264	0	ENST00000346208.3:c.1312_1313dup	p.Met438IlefsTer38	p.M438Ifs*38	ENST00000346208		437	-/AT																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0013977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	252	437	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10610154	10610154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	279	637	0	ENST00000171111.5:c.556G>T	p.Gly186Cys	p.G186C	ENST00000171111	NM_203500.1	186	Ggc/Tgc																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29552222	29552222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	66	592	0	ENST00000358273.4:c.1955G>A	p.Arg652His	p.R652H	ENST00000358273	NM_001042492.2	652	cGt/cAt																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17127442	17127442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	158	406	0	ENST00000285071.4:c.412G>A	p.Glu138Lys	p.E138K	ENST00000285071	NM_144997.5	138	Gaa/Aaa																																													NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215609851	215609851	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1076	157	579	0	ENST00000260947.4:c.1843C>G	p.Gln615Glu	p.Q615E	ENST00000260947	NM_000465.2	615	Caa/Gaa																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178919105	178919105	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	114	314	0	ENST00000263967.3:c.590T>C	p.Ile197Thr	p.I197T	ENST00000263967	NM_006218.2	197	aTa/aCa																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117609951	117609951	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	156	591	0	ENST00000368508.3:c.6748G>T	p.Val2250Leu	p.V2250L	ENST00000368508	NM_002944.2	2250	Gtg/Ttg																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106524667	106524667	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	121	426	2	ENST00000359195.3:c.2828G>T	p.Gly943Val	p.G943V	ENST00000359195	NM_002649.2	943	gGa/gTa																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139438480	139438481	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	386	604	0	ENST00000277541.6:c.135dup	p.Cys46LeufsTer97	p.C46Lfs*97	ENST00000277541	NM_017617.3	45	-/C																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63413058	63413058	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	472	547	0	ENST00000330258.3:c.109A>G	p.Thr37Ala	p.T37A	ENST00000330258	NM_152424.3	37	Aca/Gca																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0014948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	175	609	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112157657	112157658	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	84	399	0	ENST00000257430.4:c.1378dup	p.Glu460GlyfsTer4	p.E460Gfs*4	ENST00000257430	NM_000038.5	459	-/G																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	128	250	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	117	199	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27089706	27089706	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	105	213	0	ENST00000324856.7:c.2666delG	p.Gly889AlafsTer2	p.G889Afs*2	ENST00000324856	NM_006015.4	888	Ggg/gg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	122	318	1	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																													NEWRECORD																																		
KIT	3815	MSKCC	GRCh37	4	55564642	55564642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	90	248	0	ENST00000288135.5:c.530G>A	p.Arg177His	p.R177H	ENST00000288135	NM_000222.2	177	cGc/cAc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5223203	5223203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	66	174	0	ENST00000357368.4:c.2600G>A	p.Arg867His	p.R867H	ENST00000357368	NM_002850.3	867	cGc/cAc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	76	230	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15297981	15297981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	118	278	0	ENST00000263388.2:c.1775G>A	p.Arg592His	p.R592H	ENST00000263388	NM_000435.2	592	cGc/cAc																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	100	280	1	ENST00000264010.4:c.2070delA	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	112	246	0	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																													NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	133	374	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49420661	49420661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	73	212	0	ENST00000301067.7:c.15088C>T	p.Arg5030Cys	p.R5030C	ENST00000301067	NM_003482.3	5030	Cgt/Tgt																																													NEWRECORD																																		
MRE11A	4361	MSKCC	GRCh37	11	94209523	94209523	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	111	291	0	ENST00000323929.3:c.591del	p.Val198Ter	p.V198*	ENST00000323929	NM_005591.3	197	aaA/aa																																													NEWRECORD																																		
TNFRSF14	8764	MSKCC	GRCh37	1	2491274	2491274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	86	241	0	ENST00000355716.4:c.317G>A	p.Arg106His	p.R106H	ENST00000355716	NM_003820.2	106	cGc/cAc																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16264445	16264445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	122	293	0	ENST00000375759.3:c.10648G>A	p.Ala3550Thr	p.A3550T	ENST00000375759	NM_015001.2	3550	Gcc/Acc																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27099430	27099430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	103	314	0	ENST00000324856.7:c.3667C>T	p.Arg1223Cys	p.R1223C	ENST00000324856	NM_006015.4	1223	Cgc/Tgc																																													NEWRECORD																																		
FH	2271	MSKCC	GRCh37	1	241669408	241669408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	86	272	0	ENST00000366560.3:c.799C>T	p.Pro267Ser	p.P267S	ENST00000366560	NM_000143.3	267	Cca/Tca																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	30142885	30142885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	57	230	0	ENST00000389048.3:c.641G>A	p.Arg214His	p.R214H	ENST00000389048	NM_004304.4	214	cGc/cAc																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47641544	47641544	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	244	168	0	ENST00000233146.2:c.929T>G	p.Leu310Arg	p.L310R	ENST00000233146	NM_000251.2	310	cTt/cGt																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227661857	227661857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	66	176	0	ENST00000305123.5:c.1598C>T	p.Thr533Ile	p.T533I	ENST00000305123	NM_005544.2	533	aCc/aTc																																													NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185165687	185165687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	112	216	2	ENST00000265026.3:c.962C>T	p.Ala321Val	p.A321V	ENST00000265026	NM_004721.4	321	gCg/gTg																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55138664	55138664	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	88	223	1	ENST00000257290.5:c.1341G>A	p.Trp447Ter	p.W447*	ENST00000257290	NM_006206.4	447	tgG/tgA																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66197781	66197781	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	76	271	0	ENST00000273854.3:c.2918G>T	p.Trp973Leu	p.W973L	ENST00000273854	NM_004439.5	973	tGg/tTg																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67592099	67592099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	123	243	1	ENST00000274335.5:c.1915C>T	p.Arg639Ter	p.R639*	ENST00000274335		639	Cga/Tga																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32164180	32164180	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	96	208	0	ENST00000375023.3:c.5219G>A	p.Trp1740Ter	p.W1740*	ENST00000375023	NM_004557.3	1740	tGg/tAg																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157470048	157470048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	39	145	0	ENST00000346085.5:c.2842G>T	p.Ala948Ser	p.A948S	ENST00000346085	NM_020732.3	948	Gca/Tca																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106519984	106519984	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	88	203	0	ENST00000359195.3:c.2412G>T	p.Met804Ile	p.M804I	ENST00000359195	NM_002649.2	804	atG/atT																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128843375	128843375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	88	275	0	ENST00000249373.3:c.482G>A	p.Arg161Gln	p.R161Q	ENST00000249373	NM_005631.4	161	cGg/cAg																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151841949	151841949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	85	210	2	ENST00000262189.6:c.14192G>A	p.Ser4731Asn	p.S4731N	ENST00000262189	NM_170606.2	4731	aGc/aAc																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135777085	135777085	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	92	215	0	ENST00000298552.3:c.2393C>T	p.Thr798Met	p.T798M	ENST00000298552	NM_001162426.1	798	aCg/aTg																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49431709	49431709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752428122		P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	109	301	0	ENST00000301067.7:c.9430G>A	p.Ala3144Thr	p.A3144T	ENST00000301067	NM_003482.3	3144	Gca/Aca																																													NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105240286	105240286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	90	270	0	ENST00000349310.3:c.665G>A	p.Arg222His	p.R222H	ENST00000349310	NM_001014432.1	222	cGc/cAc																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2107176	2107176	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	72	264	0	ENST00000219476.3:c.845A>G	p.Asp282Gly	p.D282G	ENST00000219476	NM_000548.3	282	gAc/gGc																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3828120	3828120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	133	260	0	ENST00000262367.5:c.2005C>T	p.Arg669Trp	p.R669W	ENST00000262367	NM_004380.2	669	Cgg/Tgg																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81925150	81925150	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	137	365	0	ENST00000359376.3:c.941T>C	p.Met314Thr	p.M314T	ENST00000359376	NM_002661.3	314	aTg/aCg																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89857933	89857933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	88	265	1	ENST00000389301.3:c.1237C>T	p.Arg413Cys	p.R413C	ENST00000389301	NM_000135.2	413	Cgt/Tgt																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41251827	41251827	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	146	306	0	ENST00000357654.3:c.512T>C	p.Ile171Thr	p.I171T	ENST00000357654	NM_007294.3	171	aTa/aCa																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45423040	45423040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	103	243	0	ENST00000262160.6:c.88G>A	p.Gly30Arg	p.G30R	ENST00000262160	NM_005901.5	30	Gga/Aga																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42799231	42799231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	20	74	0	ENST00000575354.2:c.4715C>T	p.Ala1572Val	p.A1572V	ENST00000575354	NM_015125.3	1572	gCc/gTc																																													NEWRECORD																																		
SMARCB1	6598	MSKCC	GRCh37	22	24175889	24175889	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	73	271	0	ENST00000263121.7:c.1117A>G	p.Arg373Gly	p.R373G	ENST00000263121	NM_003073.3	373	Agg/Ggg																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44879892	44879892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	142	130	0	ENST00000377967.4:c.481C>T	p.Pro161Ser	p.P161S	ENST00000377967	NM_021140.2	161	Ccc/Tcc																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44938474	44938474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	158	182	0	ENST00000377967.4:c.3022G>A	p.Ala1008Thr	p.A1008T	ENST00000377967	NM_021140.2	1008	Gca/Aca																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	78	246	0	ENST00000575354.2:c.3743delC	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37687514	37687514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	61	144	0	ENST00000447079.4:c.4422del	p.Pro1475LeufsTer24	p.P1475Lfs*24	ENST00000447079	NM_015083.1	1473	cGg/cg																																													NEWRECORD																																		
TMEM127	55654	MSKCC	GRCh37	2	96919561	96919562	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	89	256	0	ENST00000258439.3:c.701dup	p.Ala235CysfsTer41	p.A235Cfs*41	ENST00000258439	NM_001193304.2	234	cct/ccCt																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114799871	114799871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	154	400	0	ENST00000543371.1:c.539del	p.Pro180ArgfsTer45	p.P180Rfs*45	ENST00000543371	NM_001198531.1	180	Ccg/cg																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128843237	128843237	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	80	275	0	ENST00000249373.3:c.349del	p.Arg117AlafsTer5	p.R117Afs*5	ENST00000249373	NM_005631.4	115	gCc/gc																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142186844	142186845	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	84	225	0	ENST00000350721.4:c.6618dup	p.Ser2207IlefsTer15	p.S2207Ifs*15	ENST00000350721	NM_001184.3	2206	-/A																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56178085	56178085	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	118	420	0	ENST00000399503.3:c.3058C>T	p.Gln1020Ter	p.Q1020*	ENST00000399503	NM_005921.1	1020	Caa/Taa																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68772198	68772199	+	splice_acceptor_variant	Splice_Site	INS	-	-	G			P-0012243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	186	753	0	ENST00000261769.5:c.49dup		p.X17_splice	ENST00000261769	NM_004360.3	17																																														NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061463	38061463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	56	275	0	ENST00000250448.2:c.526A>G	p.Ile176Val	p.I176V	ENST00000250448	NM_004496.3	176	Atc/Gtc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174764	112174764	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	124	335	1	ENST00000257430.4:c.3473G>C	p.Arg1158Thr	p.R1158T	ENST00000257430	NM_000038.5	1158	aGa/aCa																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37866723	37866723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	487	331	0	ENST00000269571.5:c.890C>T	p.Thr297Ile	p.T297I	ENST00000269571		297	aCt/aTt																																													NEWRECORD																																		
CHEK2	11200	MSKCC	GRCh37	22	29130631	29130631	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	75	307	0	ENST00000328354.6:c.79C>T	p.Gln27Ter	p.Q27*	ENST00000328354	NM_007194.3	27	Cag/Tag																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68856125	68856152	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCAAGTGGGTACCTGAGTTTTATTTTGG	CCAAGTGGGTACCTGAGTTTTATTTTGG	-			P-0004293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	97	337	0	ENST00000261769.5:c.1934_1936+25del		p.X645_splice	ENST00000261769	NM_004360.3	645																																														NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36164667	36164668	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	110	344	0	ENST00000300305.3:c.1207dup	p.Tyr403LeufsTer197	p.Y403Lfs*197	ENST00000300305		403	tac/tTac																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002339-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			659	273	368	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0002339-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			353	205	337	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0002339-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	295	406	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16245542	16245542	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002339-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			603	171	335	0	ENST00000375759.3:c.1517T>G	p.Leu506Arg	p.L506R	ENST00000375759	NM_015001.2	506	cTc/cGc																																													NEWRECORD																																		
IRF4	3662	MSKCC	GRCh37	6	405045	405045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002339-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			891	90	407	1	ENST00000380956.4:c.1127G>A	p.Arg376His	p.R376H	ENST00000380956	NM_001195286.1	376	cGc/cAc																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66766105	66766105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002339-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			341	79	260	0	ENST00000374690.3:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000374690	NM_000044.3	373	Gga/Aga																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56436071	56436072	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002339-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	261	378	1	ENST00000407977.2:c.1065dup	p.Ala356CysfsTer87	p.A356Cfs*87	ENST00000407977		355	-/T																																													NEWRECORD																																		
PLK2	10769	MSKCC	GRCh37	5	57751237	57751237	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001449-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	41	245	0	ENST00000274289.3:c.1630G>C	p.Val544Leu	p.V544L	ENST00000274289	NM_006622.3	544	Gtt/Ctt																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	443454	443454	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001449-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			330	50	261	0	ENST00000399788.2:c.1443C>A	p.Cys481Ter	p.C481*	ENST00000399788	NM_001042603.1	481	tgC/tgA																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32953632	32953633	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001449-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			183	24	163	0	ENST00000380152.3:c.8940dupA	p.Glu2981ArgfsTer37	p.E2981Rfs*37	ENST00000380152		2978	tca/tcAa																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	246	660	1	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																													NEWRECORD																																		
CHEK2	11200	MSKCC	GRCh37	22	29107974	29107974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	133	631	0	ENST00000328354.6:c.715G>A	p.Glu239Lys	p.E239K	ENST00000328354	NM_007194.3	239	Gag/Aag																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15952173	15952182	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTGCGCCC	CTCTGCGCCC	-			P-0006189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	222	525	0	ENST00000268712.3:c.6513_6522del	p.Arg2171SerfsTer15	p.R2171Sfs*15	ENST00000268712	NM_006311.3	2171	agGGGCGCAGAG/ag																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27089741	27089741	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	106	262	0	ENST00000324856.7:c.2697del	p.Ala900ProfsTer19	p.A900Pfs*19	ENST00000324856	NM_006015.4	899	gtC/gt																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46244435	46244438	+	frameshift_variant	Frame_Shift_Del	DEL	AGAT	AGAT	-			P-0006189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	161	575	0	ENST00000334344.6:c.2530_2533del	p.Asp844LeufsTer4	p.D844Lfs*4	ENST00000334344	NM_152641.2	843	caAGAT/ca																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	72	389	2	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	39	397	2	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15288437	15288437	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	32	181	0	ENST00000263388.2:c.4302G>A	p.Trp1434Ter	p.W1434*	ENST00000263388	NM_000435.2	1434	tgG/tgA																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27097733	27097733	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	31	332	0	ENST00000324856.7:c.3322G>T	p.Glu1108Ter	p.E1108*	ENST00000324856	NM_006015.4	1108	Gaa/Taa																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27099406	27099406	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	28	322	0	ENST00000324856.7:c.3643A>C	p.Met1215Leu	p.M1215L	ENST00000324856	NM_006015.4	1215	Atg/Ctg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106090	27106090	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	23	236	0	ENST00000324856.7:c.5701G>T	p.Gly1901Ter	p.G1901*	ENST00000324856	NM_006015.4	1901	Gga/Tga																																													NEWRECORD																																		
NEGR1	257194	MSKCC	GRCh37	1	72400804	72400804	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	41	445	0	ENST00000357731.5:c.367C>T	p.Gln123Ter	p.Q123*	ENST00000357731	NM_173808.2	123	Caa/Taa																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25966982	25966982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	51	276	0	ENST00000435504.4:c.2224G>T	p.Glu742Ter	p.E742*	ENST00000435504		742	Gag/Tag																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29455315	29455315	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	54	191	1	ENST00000389048.3:c.2488-1G>A		p.X830_splice	ENST00000389048	NM_004304.4	830																																														NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48025771	48025771	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	42	273	1	ENST00000234420.5:c.649G>T	p.Asp217Tyr	p.D217Y	ENST00000234420	NM_000179.2	217	Gat/Tat																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142253927	142253927	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	28	298	1	ENST00000350721.4:c.3940A>G	p.Asn1314Asp	p.N1314D	ENST00000350721	NM_001184.3	1314	Aat/Gat																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55156682	55156682	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	22	172	0	ENST00000257290.5:c.3083T>C	p.Val1028Ala	p.V1028A	ENST00000257290	NM_006206.4	1028	gTc/gCc																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66356216	66356216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	89	267	0	ENST00000273854.3:c.1281G>T	p.Met427Ile	p.M427I	ENST00000273854	NM_004439.5	427	atG/atT																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143045834	143045834	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	55	275	0	ENST00000262992.4:c.1800G>T	p.Gln600His	p.Q600H	ENST00000262992	NM_001101669.1	600	caG/caT																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187629880	187629880	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	78	318	0	ENST00000441802.2:c.1102G>C	p.Glu368Gln	p.E368Q	ENST00000441802	NM_005245.3	368	Gaa/Caa																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157256628	157256628	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	49	277	0	ENST00000346085.5:c.1955G>C	p.Arg652Thr	p.R652T	ENST00000346085	NM_020732.3	652	aGa/aCa																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151860765	151860765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	32	240	0	ENST00000262189.6:c.9897G>A	p.Met3299Ile	p.M3299I	ENST00000262189	NM_170606.2	3299	atG/atA																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8331612	8331612	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	66	420	0	ENST00000356435.5:c.5504G>C	p.Gly1835Ala	p.G1835A	ENST00000356435		1835	gGc/gCc																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552822		P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	36	151	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																													NEWRECORD																																		
MRE11A	4361	MSKCC	GRCh37	11	94189441	94189441	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	55	328	0	ENST00000323929.3:c.1563+1G>C		p.X521_splice	ENST00000323929	NM_005591.3	521																																														NEWRECORD																																		
PGR	5241	MSKCC	GRCh37	11	100922163	100922163	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs112862471		P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	30	379	0	ENST00000325455.5:c.2349A>G	p.Ile783Met	p.I783M	ENST00000325455	NM_001202474.3	783	atA/atG																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108114757	108114757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	33	280	0	ENST00000278616.4:c.574C>A	p.His192Asn	p.H192N	ENST00000278616	NM_000051.3	192	Cat/Aat																																													NEWRECORD																																		
MDM2	4193	MSKCC	GRCh37	12	69218372	69218372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	36	374	0	ENST00000462284.1:c.464C>A	p.Ser155Tyr	p.S155Y	ENST00000462284	NM_002392.5	155	tCt/tAt																																													NEWRECORD																																		
PTPN11	5781	MSKCC	GRCh37	12	112884201	112884201	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	33	248	0	ENST00000351677.2:c.136A>G	p.Arg46Gly	p.R46G	ENST00000351677	NM_002834.3	46	Aga/Gga																																													NEWRECORD																																		
PTPN11	5781	MSKCC	GRCh37	12	112915528	112915528	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	43	441	0	ENST00000351677.2:c.927C>G	p.Ile309Met	p.I309M	ENST00000351677	NM_002834.3	309	atC/atG																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133250250	133250250	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	34	354	0	ENST00000320574.5:c.1270C>G	p.Leu424Val	p.L424V	ENST00000320574	NM_006231.2	424	Ctc/Gtc																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28964125	28964125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	30	332	0	ENST00000282397.4:c.1777C>T	p.Arg593Trp	p.R593W	ENST00000282397	NM_002019.4	593	Cgg/Tgg																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73355839	73355839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	35	146	0	ENST00000377767.4:c.132G>T	p.Glu44Asp	p.E44D	ENST00000377767	NM_014953.3	44	gaG/gaT																																													NEWRECORD																																		
RAD51	5888	MSKCC	GRCh37	15	41021830	41021830	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	33	292	1	ENST00000267868.3:c.772G>C	p.Glu258Gln	p.E258Q	ENST00000267868	NM_002875.4	258	Gag/Cag																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42041920	42041920	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	42	445	0	ENST00000219905.7:c.6115G>T	p.Glu2039Ter	p.E2039*	ENST00000219905	NM_001164273.1	2039	Gaa/Taa																																													NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91304040	91304040	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	28	426	1	ENST00000355112.3:c.1437C>A	p.Phe479Leu	p.F479L	ENST00000355112	NM_000057.2	479	ttC/ttA																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99442709	99442709	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	34	251	0	ENST00000268035.6:c.1106A>G	p.Asn369Ser	p.N369S	ENST00000268035	NM_000875.3	369	aAc/aGc																																													NEWRECORD																																		
NUP93	9688	MSKCC	GRCh37	16	56864492	56864492	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	75	411	0	ENST00000308159.5:c.980G>T	p.Arg327Leu	p.R327L	ENST00000308159	NM_014669.4	327	cGc/cTc																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	12013719	12013719	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	43	304	1	ENST00000353533.5:c.661G>T	p.Glu221Ter	p.E221*	ENST00000353533	NM_003010.3	221	Gaa/Taa																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16021323	16021323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	40	319	0	ENST00000268712.3:c.1934G>A	p.Arg645His	p.R645H	ENST00000268712	NM_006311.3	645	cGt/cAt																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29560097	29560097	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	31	329	0	ENST00000358273.4:c.3574G>T	p.Glu1192Ter	p.E1192*	ENST00000358273	NM_001042492.2	1192	Gaa/Taa																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435290	56435290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	22	164	0	ENST00000407977.2:c.1847C>T	p.Pro616Leu	p.P616L	ENST00000407977		616	cCc/cTc																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56448277	56448277	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	42	160	0	ENST00000407977.2:c.370A>T	p.Ser124Cys	p.S124C	ENST00000407977		124	Agc/Tgc																																													NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58740371	58740371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	28	339	0	ENST00000305921.3:c.1276C>A	p.Pro426Thr	p.P426T	ENST00000305921	NM_003620.3	426	Cca/Aca																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59926556	59926556	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	33	378	0	ENST00000259008.2:c.441C>G	p.Tyr147Ter	p.Y147*	ENST00000259008	NM_032043.2	147	taC/taG																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2213543	2213543	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	72	263	0	ENST00000398665.3:c.1563G>C	p.Lys521Asn	p.K521N	ENST00000398665	NM_032482.2	521	aaG/aaC																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15350787	15350787	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	26	196	0	ENST00000263377.2:c.3216G>C	p.Gln1072His	p.Q1072H	ENST00000263377	NM_058243.2	1072	caG/caC																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17952282	17952282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	57	269	1	ENST00000458235.1:c.1058C>A	p.Thr353Lys	p.T353K	ENST00000458235	NM_000215.3	353	aCg/aAg																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42797948	42797948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	66	208	1	ENST00000575354.2:c.4000C>T	p.Arg1334Trp	p.R1334W	ENST00000575354	NM_015125.3	1334	Cgg/Tgg																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36164611	36164611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	45	174	0	ENST00000300305.3:c.1264G>A	p.Glu422Lys	p.E422K	ENST00000300305		422	Gag/Aag																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53223892	53223892	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	27	184	0	ENST00000375401.3:c.3467A>C	p.Lys1156Thr	p.K1156T	ENST00000375401	NM_004187.3	1156	aAg/aCg																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46287215	46287216	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	16	216	0	ENST00000334344.6:c.5165dup	p.Thr1723HisfsTer6	p.T1723Hfs*6	ENST00000334344	NM_152641.2	1720	-/G																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27099023	27099023	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	58	293	0	ENST00000324856.7:c.3442del	p.Gln1148SerfsTer13	p.Q1148Sfs*13	ENST00000324856	NM_006015.4	1147	Ccc/cc																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022924	31022925	+	missense_variant	Missense_Mutation	DNP	AG	AG	TA			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	43	305	0	ENST00000375687.4:c.2409_2410delinsTA	p.Gln803_Gly804delinsHisArg	p.Q803_G804delinsHR	ENST00000375687	NM_015338.5	803	caAGga/caTAga																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178951996	178951996	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000107-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			817	80	370	0	ENST00000263967.3:c.3051T>G	p.Asp1017Glu	p.D1017E	ENST00000263967	NM_006218.2	1017	gaT/gaG																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952000	178952000	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000107-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			819	81	369	0	ENST00000263967.3:c.3055A>G	p.Ile1019Val	p.I1019V	ENST00000263967	NM_006218.2	1019	Att/Gtt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952006	178952006	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000107-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			805	88	371	0	ENST00000263967.3:c.3061T>C	p.Tyr1021His	p.Y1021H	ENST00000263967	NM_006218.2	1021	Tac/Cac																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29559886	29559887	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000107-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	106	184	0	ENST00000358273.4:c.3484dupA	p.Met1162AsnfsTer33	p.M1162Nfs*33	ENST00000358273	NM_001042492.2	1161	-/A																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0005264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	318	630	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15300206	15300206	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	48	668	0	ENST00000263388.2:c.1070G>T	p.Ser357Ile	p.S357I	ENST00000263388	NM_000435.2	357	aGc/aTc																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47006890	47006891	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	60	295	0	ENST00000329236.7:c.13dup	p.Arg5LysfsTer7	p.R5Kfs*7	ENST00000329236	NM_001204466.1	4	gaa/gAaa																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0009731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	181	366	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56491645	56491645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	89	310	0	ENST00000267101.3:c.2537G>T	p.Ser846Ile	p.S846I	ENST00000267101	NM_001982.3	846	aGt/aTt																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56482437	56482437	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	57	280	0	ENST00000267101.3:c.985A>G	p.Lys329Glu	p.K329E	ENST00000267101	NM_001982.3	329	Aaa/Gaa																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68842405	68842406	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	112	460	0	ENST00000261769.5:c.469dup	p.Val157GlyfsTer11	p.V157Gfs*11	ENST00000261769	NM_004360.3	156	tgg/tGgg																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29662032	29662033	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	C			P-0009731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	93	210	0	ENST00000358273.4:c.5989_5990delinsC	p.Trp1997ArgfsTer15	p.W1997Rfs*15	ENST00000358273	NM_001042492.2	1997	TGg/Cg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	127	346	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0013772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	205	522	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																													NEWRECORD																																		
ETV1	2115	MSKCC	GRCh37	7	13971292	13971292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	153	512	1	ENST00000405192.2:c.637C>T	p.Arg213Cys	p.R213C	ENST00000405192	NM_001163147.1	213	Cgc/Tgc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	107	345	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174357	112174358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	104	314	0	ENST00000257430.4:c.3067dup	p.Thr1023AsnfsTer6	p.T1023Nfs*6	ENST00000257430	NM_000038.5	1022	-/A																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118343255	118343255	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	277	406	0	ENST00000534358.1:c.1381A>C	p.Lys461Gln	p.K461Q	ENST00000534358	NM_005933.3	461	Aaa/Caa																																													NEWRECORD																																		
TRAF7	84231	MSKCC	GRCh37	16	2223235	2223235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	189	520	0	ENST00000326181.6:c.847C>T	p.Arg283Cys	p.R283C	ENST00000326181	NM_032271.2	283	Cgc/Tgc																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48593413	48593415	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0013772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	142	393	0	ENST00000342988.3:c.1165_1167del	p.Leu389del	p.L389del	ENST00000342988	NM_005359.5	388	caGTTg/cag																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52620566	52620566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	141	459	0	ENST00000394830.3:c.3187C>T	p.Arg1063Trp	p.R1063W	ENST00000394830	NM_018313.4	1063	Cgg/Tgg																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187539933	187539933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	158	466	0	ENST00000441802.2:c.7807G>A	p.Val2603Met	p.V2603M	ENST00000441802	NM_005245.3	2603	Gtg/Atg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139399902	139399902	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	190	571	0	ENST00000277541.6:c.4446C>A	p.Asn1482Lys	p.N1482K	ENST00000277541	NM_017617.3	1482	aaC/aaA																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0013909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	171	181	0				ENST00000310581	NM_198253.2																																															NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0013909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	283	435	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48919244	48919244	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	293	417	0	ENST00000267163.4:c.409G>T	p.Glu137Ter	p.E137*	ENST00000267163	NM_000321.2	137	Gaa/Taa																																													NEWRECORD																																		
PIK3R3	8503	MSKCC	GRCh37	1	46512257	46512257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1239	67	763	1	ENST00000262741.5:c.982G>A	p.Val328Ile	p.V328I	ENST00000262741	NM_003629.3	328	Gtc/Atc																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48584567	48584567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	136	537	0	ENST00000342988.3:c.740G>A	p.Gly247Glu	p.G247E	ENST00000342988	NM_005359.5	247	gGa/gAa																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67589629	67589630	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGATTA			P-0013909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	176	263	0	ENST00000274335.5:c.1393_1398dup	p.Arg465_Leu466dup	p.R465_L466dup	ENST00000274335		465	-/AGATTA																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67590411	67590411	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	159	423	0	ENST00000274335.5:c.1477del	p.Ile493TyrfsTer17	p.I493Yfs*17	ENST00000274335		491	atA/at																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11264688	11264688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	47	482	0	ENST00000361445.4:c.3874C>A	p.Leu1292Met	p.L1292M	ENST00000361445	NM_004958.3	1292	Ctg/Atg																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47702176	47702176	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	157	332	0	ENST00000233146.2:c.1772C>A	p.Pro591Gln	p.P591Q	ENST00000233146	NM_000251.2	591	cCa/cAa																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49933704	49933704	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140736052		P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	78	671	1	ENST00000296474.3:c.2573G>A	p.Arg858His	p.R858H	ENST00000296474	NM_002447.2	858	cGc/cAc																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142269074	142269074	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	262	425	0	ENST00000350721.4:c.2876T>C	p.Val959Ala	p.V959A	ENST00000350721	NM_001184.3	959	gTg/gCg																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187560916	187560916	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	287	353	0	ENST00000441802.2:c.3602G>T	p.Arg1201Met	p.R1201M	ENST00000441802	NM_005245.3	1201	aGg/aTg																																													NEWRECORD																																		
HIST1H3B	8358	MSKCC	GRCh37	6	26032062	26032062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	523	891	1	ENST00000244661.2:c.227C>T	p.Ala76Val	p.A76V	ENST00000244661	NM_003537.3	76	gCc/gTc																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30672116	30672116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	79	457	0	ENST00000376406.3:c.4844C>T	p.Thr1615Ile	p.T1615I	ENST00000376406	NM_014641.2	1615	aCa/aTa																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30673536	30673536	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	265	667	0	ENST00000376406.3:c.3424A>G	p.Thr1142Ala	p.T1142A	ENST00000376406	NM_014641.2	1142	Aca/Gca																																													NEWRECORD																																		
CDKN1A	1026	MSKCC	GRCh37	6	36652015	36652015	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1309823433		P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	185	361	0	ENST00000244741.5:c.137G>A	p.Arg46His	p.R46H	ENST00000244741	NM_000389.4	46	cGt/cAt																																													NEWRECORD																																		
IFNGR1	3459	MSKCC	GRCh37	6	137519545	137519545	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56403507		P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	212	365	0	ENST00000367739.4:c.1093G>A	p.Val365Met	p.V365M	ENST00000367739	NM_000416.2	365	Gtg/Atg																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157505462	157505462	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	244	410	0	ENST00000346085.5:c.3443A>G	p.Tyr1148Cys	p.Y1148C	ENST00000346085	NM_020732.3	1148	tAc/tGc																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140501260	140501260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	172	278	0	ENST00000288602.6:c.812G>A	p.Arg271His	p.R271H	ENST00000288602	NM_004333.4	271	cGt/cAt																																													NEWRECORD																																		
RAD21	5885	MSKCC	GRCh37	8	117864309	117864309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	301	493	0	ENST00000297338.2:c.1348C>T	p.Arg450Cys	p.R450C	ENST00000297338	NM_006265.2	450	Cgc/Tgc																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139402794	139402794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	106	430	1	ENST00000277541.6:c.3215G>A	p.Gly1072Asp	p.G1072D	ENST00000277541	NM_017617.3	1072	gGc/gAc																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118366990	118366990	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	257	472	1	ENST00000534358.1:c.5572C>T	p.Arg1858Ter	p.R1858*	ENST00000534358	NM_005933.3	1858	Cga/Tga																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49438641	49438641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	43	434	2	ENST00000301067.7:c.4849C>T	p.Arg1617Trp	p.R1617W	ENST00000301067	NM_003482.3	1617	Cgg/Tgg																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115117431	115117431	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	305	470	1	ENST00000257566.3:c.743A>G	p.Tyr248Cys	p.Y248C	ENST00000257566	NM_016569.3	248	tAc/tGc																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88472469	88472469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	223	536	1	ENST00000360948.2:c.2086G>T	p.Gly696Trp	p.G696W	ENST00000360948	NM_001012338.2	696	Ggg/Tgg																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81819655	81819655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	344	621	0	ENST00000359376.3:c.61G>A	p.Ala21Thr	p.A21T	ENST00000359376	NM_002661.3	21	Gcc/Acc																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81891867	81891867	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	214	587	0	ENST00000359376.3:c.338-1G>A		p.X113_splice	ENST00000359376	NM_002661.3	113																																														NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89347470	89347470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	155	637	0	ENST00000301030.4:c.5480C>A	p.Pro1827His	p.P1827H	ENST00000301030	NM_001256183.1	1827	cCc/cAc																																													NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40384055	40384055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	332	706	0	ENST00000293328.3:c.91C>T	p.Arg31Trp	p.R31W	ENST00000293328	NM_012448.3	31	Cgg/Tgg																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5208036	5208036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	167	505	0	ENST00000357368.4:c.5675C>T	p.Thr1892Met	p.T1892M	ENST00000357368	NM_002850.3	1892	aCg/aTg																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5245891	5245891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	267	557	1	ENST00000357368.4:c.884G>A	p.Arg295Gln	p.R295Q	ENST00000357368	NM_002850.3	295	cGg/cAg																																													NEWRECORD																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	248	474	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31025035	31025035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	33	394	1	ENST00000375687.4:c.4520C>T	p.Ala1507Val	p.A1507V	ENST00000375687	NM_015338.5	1507	gCg/gTg																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66931504	66931504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	270	256	1	ENST00000374690.3:c.2146G>A	p.Val716Met	p.V716M	ENST00000374690	NM_000044.3	716	Gtg/Atg																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	386	304	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	266	404	2	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	163	361	1	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030692	48030692	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	24	391	1	ENST00000234420.5:c.3312delT	p.Phe1104LeufsTer11	p.F1104Lfs*11	ENST00000234420	NM_000179.2	1102	acT/ac																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142261555	142261555	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	165	368	0	ENST00000350721.4:c.3402del	p.Phe1134LeufsTer6	p.F1134Lfs*6	ENST00000350721	NM_001184.3	1134	ttT/tt																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	152	261	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	303	843	8	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	201	377	1	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	85	253	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																													NEWRECORD																																		
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505379	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	240	438	0	ENST00000428830.2:c.675_676del	p.Lys225AsnfsTer19	p.K225Nfs*19	ENST00000428830	NM_001114121.2	223	gAA/g																																													NEWRECORD																																		
FOXL2	668	MSKCC	GRCh37	3	138664761	138664761	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	37	69	0	ENST00000330315.3:c.804del	p.Gly269AlafsTer2	p.G269Afs*2	ENST00000330315	NM_023067.3	268	ccC/cc																																													NEWRECORD																																		
ERG	2078	MSKCC	GRCh37	21	39772564	39772564	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	127	283	0	ENST00000288319.7:c.677delG	p.Gly226ValfsTer65	p.G226Vfs*65	ENST00000288319	NM_182918.3	226	gGt/gt																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118365074	118365075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	215	378	0	ENST00000534358.1:c.5256dup	p.Ala1753SerfsTer32	p.A1753Sfs*32	ENST00000534358	NM_005933.3	1750	-/A																																													NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50444437	50444437	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	136	236	0	ENST00000331340.3:c.369del	p.Ile124SerfsTer69	p.I124Sfs*69	ENST00000331340	NM_006060.4	123	Ggg/gg																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37649086	37649086	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	43	431	0	ENST00000447079.4:c.2193del	p.Ile732LeufsTer21	p.I732Lfs*21	ENST00000447079	NM_015083.1	731	Ggg/gg																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0007870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1489	257	539	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0007870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	771	522	1	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	28	231	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0007870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	134	399	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	12032474	12032474	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	92	321	0	ENST00000353533.5:c.910C>T	p.Arg304Ter	p.R304*	ENST00000353533	NM_003010.3	304	Cga/Tga																																													NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35867540	35867541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1250237683		P-0007870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	56	430	0	ENST00000303115.3:c.361dup	p.Ile121AsnfsTer8	p.I121Nfs*8	ENST00000303115	NM_002185.3	118	-/A																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151860281	151860281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	93	615	0	ENST00000262189.6:c.10381G>A	p.Asp3461Asn	p.D3461N	ENST00000262189	NM_170606.2	3461	Gat/Aat																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	39	312	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0009650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	38	674	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174309	112174310	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	41	438	0	ENST00000257430.4:c.3022dup	p.Ile1008AsnfsTer3	p.I1008Nfs*3	ENST00000257430	NM_000038.5	1006	-/A																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0014389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	258	295	0				ENST00000310581	NM_198253.2																																															NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0014389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	595	419	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																													NEWRECORD																																		
TRAF7	84231	MSKCC	GRCh37	16	2226369	2226369	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	218	708	0	ENST00000326181.6:c.1982T>C	p.Val661Ala	p.V661A	ENST00000326181	NM_032271.2	661	gTg/gCg																																													NEWRECORD																																		
RAD51C	5889	MSKCC	GRCh37	17	56772432	56772432	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	153	567	0	ENST00000337432.4:c.286A>T	p.Thr96Ser	p.T96S	ENST00000337432	NM_058216.2	96	Acc/Tcc																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55141035	55141035	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	25	236	0	ENST00000257290.5:c.1681G>C	p.Val561Leu	p.V561L	ENST00000257290	NM_006206.4	561	Gtc/Ctc																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98242724	98242724	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	241	479	2	ENST00000331920.6:c.893A>G	p.Asn298Ser	p.N298S	ENST00000331920	NM_000264.3	298	aAt/aGt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002740-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			279	103	559	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11204749	11204749	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199612643		P-0002740-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			468	53	690	0	ENST00000361445.4:c.4828G>A	p.Glu1610Lys	p.E1610K	ENST00000361445	NM_004958.3	1610	Gag/Aag																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115109949	115109950	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0002740-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	39	405	0	ENST00000257566.3:c.1927_1928dup	p.Ser644ThrfsTer246	p.S644Tfs*246	ENST00000257566	NM_016569.3	643	tac/taTAc																																													NEWRECORD																																		
IDH2	3418	MSKCC	GRCh37	15	90627545	90627545	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002740-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	109	646	0	ENST00000330062.3:c.1312delC	p.Leu438SerfsTer30	p.L438Sfs*30	ENST00000330062	NM_002168.2	438	Ctc/tc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	239	227	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	176	282	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49428410	49428411	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1284500089		P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	81	368	0	ENST00000301067.7:c.10394dup	p.Pro3466ThrfsTer2	p.P3466Tfs*2	ENST00000301067	NM_003482.3	3465	gga/ggGa																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30729968	30729968	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	172	209	0	ENST00000359013.4:c.1564C>T	p.Arg522Ter	p.R522*	ENST00000359013	NM_001024847.2	522	Cga/Tga																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89468488	89468488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	115	329	0	ENST00000336596.2:c.2022G>T	p.Met674Ile	p.M674I	ENST00000336596	NM_005233.5	674	atG/atT																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55136837	55136837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	151	403	0	ENST00000257290.5:c.1159G>A	p.Glu387Lys	p.E387K	ENST00000257290	NM_006206.4	387	Gaa/Aaa																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55962432	55962432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	192	371	0	ENST00000263923.4:c.2692G>A	p.Val898Met	p.V898M	ENST00000263923	NM_002253.2	898	Gtg/Atg																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106164916	106164916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	124	168	0	ENST00000380013.4:c.3784C>T	p.Arg1262Trp	p.R1262W	ENST00000380013	NM_001127208.2	1262	Cgg/Tgg																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38955731	38955731	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	97	376	0	ENST00000357387.3:c.2575G>C	p.Asp859His	p.D859H	ENST00000357387	NM_152756.3	859	Gat/Cat																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8521392	8521392	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	185	401	0	ENST00000356435.5:c.846G>T	p.Met282Ile	p.M282I	ENST00000356435		282	atG/atT																																													NEWRECORD																																		
IGF1	3479	MSKCC	GRCh37	12	102869477	102869477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	72	212	0	ENST00000307046.8:c.164G>C	p.Gly55Ala	p.G55A	ENST00000307046	NM_001111285.1	55	gGg/gCg																																													NEWRECORD																																		
SH2B3	10019	MSKCC	GRCh37	12	111884578	111884578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	215	418	0	ENST00000341259.2:c.754G>A	p.Ala252Thr	p.A252T	ENST00000341259	NM_005475.2	252	Gca/Aca																																													NEWRECORD																																		
RAD51B	5890	MSKCC	GRCh37	14	68290288	68290288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	52	407	0	ENST00000487270.1:c.28G>T	p.Gly10Cys	p.G10C	ENST00000487270	NM_133509.3	10	Ggt/Tgt																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37682473	37682473	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	269	267	0	ENST00000447079.4:c.3664G>T	p.Glu1222Ter	p.E1222*	ENST00000447079	NM_015083.1	1222	Gag/Tag																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78899176	78899176	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	22	193	0	ENST00000306801.3:c.2815G>T	p.Asp939Tyr	p.D939Y	ENST00000306801	NM_020761.2	939	Gac/Tac																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63410892	63410892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	252	518	0	ENST00000330258.3:c.2275G>A	p.Val759Ile	p.V759I	ENST00000330258	NM_152424.3	759	Gtt/Att																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49448529	49448529	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	150	233	0	ENST00000301067.7:c.182del	p.Gly61ValfsTer69	p.G61Vfs*69	ENST00000301067	NM_003482.3	61	gGt/gt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			819	123	478	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			353	57	388	0				ENST00000310581	NM_198253.2																																															NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89445061	89445061	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			884	87	583	0	ENST00000336596.2:c.1381G>C	p.Glu461Gln	p.E461Q	ENST00000336596	NM_005233.5	461	Gaa/Caa																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55955141	55955141	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0000627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			560	76	440	0	ENST00000263923.4:c.3405-1G>T		p.X1135_splice	ENST00000263923	NM_002253.2	1135																																														NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187519237	187519237	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			784	111	508	0	ENST00000441802.2:c.12146G>C	p.Cys4049Ser	p.C4049S	ENST00000441802	NM_005245.3	4049	tGt/tCt																																													NEWRECORD																																		
FGFR4	2264	MSKCC	GRCh37	5	176523142	176523142	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			655	74	554	0	ENST00000292408.4:c.1906G>C	p.Gly636Arg	p.G636R	ENST00000292408	NM_213647.1	636	Ggc/Cgc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579589	7579589	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0000627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			499	77	418	0	ENST00000269305.4:c.98C>T	p.Ser33Phe	p.S33F	ENST00000269305	NM_001126112.2	33	tCc/tTc																																													NEWRECORD																																		
ZRSR2	8233	MSKCC	GRCh37	X	15821910	15821910	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1369	180	938	0	ENST00000307771.7:c.303A>T	p.Glu101Asp	p.E101D	ENST00000307771	NM_005089.3	101	gaA/gaT																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39922264	39922264	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			648	75	473	0	ENST00000378444.4:c.3908G>T	p.Gly1303Val	p.G1303V	ENST00000378444	NM_001123385.1	1303	gGc/gTc																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55968644	55968645	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			968	142	607	0	ENST00000263923.4:c.2018dup	p.Glu674GlyfsTer29	p.E674Gfs*29	ENST00000263923	NM_002253.2	673	ctg/ctTg																																													NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			349	77	449	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25469179	25469179	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			275	151	574	0	ENST00000264709.3:c.1280-1G>A		p.X427_splice	ENST00000264709	NM_175629.2	427																																														NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55984951	55984951	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	119	672	0	ENST00000263923.4:c.178G>C	p.Asp60His	p.D60H	ENST00000263923	NM_002253.2	60	Gac/Cac																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187628667	187628667	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	122	604	0	ENST00000441802.2:c.2315G>T	p.Gly772Val	p.G772V	ENST00000441802	NM_005245.3	772	gGa/gTa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112176893	112176893	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			349	162	672	0	ENST00000257430.4:c.5602G>C	p.Asp1868His	p.D1868H	ENST00000257430	NM_000038.5	1868	Gat/Cat																																													NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91293050	91293050	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	131	545	0	ENST00000355112.3:c.552G>C	p.Gln184His	p.Q184H	ENST00000355112	NM_000057.2	184	caG/caC																																													NEWRECORD																																		
ERCC4	2072	MSKCC	GRCh37	16	14041626	14041626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	122	759	1	ENST00000311895.7:c.2173G>A	p.Glu725Lys	p.E725K	ENST00000311895	NM_005236.2	725	Gag/Aag																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68849586	68849586	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	165	766	0	ENST00000261769.5:c.1489G>T	p.Glu497Ter	p.E497*	ENST00000261769	NM_004360.3	497	Gag/Tag																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604701	48604701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			175	143	616	0	ENST00000342988.3:c.1523G>A	p.Gly508Asp	p.G508D	ENST00000342988	NM_005359.5	508	gGc/gAc																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604799	48604799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	35	532	0	ENST00000342988.3:c.1621C>T	p.His541Tyr	p.H541Y	ENST00000342988	NM_005359.5	541	Cat/Tat																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10267111	10267111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			321	125	613	0	ENST00000340748.4:c.1307C>T	p.Ser436Phe	p.S436F	ENST00000340748		436	tCt/tTt																																													NEWRECORD																																		
SH2D1A	4068	MSKCC	GRCh37	X	123505218	123505218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	125	561	0	ENST00000371139.4:c.364G>A	p.Asp122Asn	p.D122N	ENST00000371139	NM_001114937.2	122	Gat/Aat																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16255092	16255093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	113	493	0	ENST00000375759.3:c.2363dup	p.Asn788LysfsTer2	p.N788Kfs*2	ENST00000375759	NM_015001.2	786	aca/acAa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	11	401	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29528082	29528082	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	24	266	0	ENST00000358273.4:c.1090T>G	p.Phe364Val	p.F364V	ENST00000358273	NM_001042492.2	364	Ttc/Gtc																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	224	625	1	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	114	660	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	52	230	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																													NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	115	675	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	102	613	0	ENST00000407977.2:c.349delC	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																													NEWRECORD																																		
STAT3	6774	MSKCC	GRCh37	17	40475061	40475063	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1125	168	1084	0	ENST00000264657.5:c.1847_1849del	p.Glu616del	p.E616del	ENST00000264657	NM_139276.2	616	gAAGga/gga																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	87	473	0	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72822585	72822586	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	117	913	2	ENST00000268489.5:c.9589dupC	p.Gln3197ProfsTer42	p.Q3197Pfs*42	ENST00000268489	NM_006885.3	3197	cag/cCag																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67588981	67588981	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	104	568	0	ENST00000274335.5:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000274335		358	Cga/Tga																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106157834	106157834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	77	591	0	ENST00000380013.4:c.2735C>T	p.Ala912Val	p.A912V	ENST00000380013	NM_001127208.2	912	gCg/gTg																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67592099	67592099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	153	701	2	ENST00000274335.5:c.1915C>T	p.Arg639Ter	p.R639*	ENST00000274335		639	Cga/Tga																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140434413	140434413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	132	736	0	ENST00000288602.6:c.2285C>T	p.Ala762Val	p.A762V	ENST00000288602	NM_004333.4	762	gCg/gTg																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38968098	38968098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	107	758	0	ENST00000357387.3:c.1007G>A	p.Arg336His	p.R336H	ENST00000357387	NM_152756.3	336	cGt/cAt																																													NEWRECORD																																		
MYOD1	4654	MSKCC	GRCh37	11	17741837	17741837	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199584989		P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	47	197	1	ENST00000250003.3:c.508G>A	p.Ala170Thr	p.A170T	ENST00000250003	NM_002478.4	170	Gcg/Acg																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134884908	134884908	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202034365		P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	130	799	2	ENST00000398015.3:c.1684G>A	p.Val562Ile	p.V562I	ENST00000398015	NM_004441.4	562	Gtc/Atc																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16258889	16258889	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	174	828	1	ENST00000375759.3:c.6158delA	p.Asn2053ThrfsTer11	p.N2053Tfs*11	ENST00000375759	NM_015001.2	2052	Aaa/aa																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76919038	76919038	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	97	575	1	ENST00000373344.5:c.3953delA	p.Asn1318IlefsTer28	p.N1318Ifs*28	ENST00000373344	NM_000489.3	1318	aAt/at																																													NEWRECORD																																		
CDK4	1019	MSKCC	GRCh37	12	58144708	58144708	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	215	574	1	ENST00000257904.6:c.520G>A	p.Val174Met	p.V174M	ENST00000257904	NM_000075.3	174	Gtg/Atg																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47163377	47163377	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	110	666	0	ENST00000409792.3:c.2749del	p.Ser917ValfsTer5	p.S917Vfs*5	ENST00000409792	NM_014159.6	917	Agt/gt																																													NEWRECORD																																		
DAXX	1616	MSKCC	GRCh37	6	33288785	33288785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	103	435	0	ENST00000374542.5:c.767G>A	p.Arg256His	p.R256H	ENST00000374542	NM_001141970.1	256	cGc/cAc																																													NEWRECORD																																		
PIK3CD	5293	MSKCC	GRCh37	1	9782390	9782390	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	162	724	0	ENST00000377346.4:c.2323G>T	p.Gly775Cys	p.G775C	ENST00000377346	NM_005026.3	775	Ggc/Tgc																																													NEWRECORD																																		
MUTYH	4595	MSKCC	GRCh37	1	45797118	45797118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	109	732	0	ENST00000372115.3:c.1255G>A	p.Ala419Thr	p.A419T	ENST00000372115	NM_001048171.1	419	Gcc/Acc																																													NEWRECORD																																		
RIT1	6016	MSKCC	GRCh37	1	155874184	155874184	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1091	97	896	0	ENST00000368323.3:c.347A>G	p.Gln116Arg	p.Q116R	ENST00000368323	NM_006912.5	116	cAg/cGg																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156849041	156849041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	124	634	0	ENST00000524377.1:c.1933C>T	p.His645Tyr	p.H645Y	ENST00000524377	NM_002529.3	645	Cat/Tat																																													NEWRECORD																																		
MYCN	4613	MSKCC	GRCh37	2	16085996	16085996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	127	561	0	ENST00000281043.3:c.1172G>A	p.Arg391His	p.R391H	ENST00000281043	NM_005378.4	391	cGc/cAc																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29416659	29416659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	76	529	3	ENST00000389048.3:c.4294C>T	p.Arg1432Trp	p.R1432W	ENST00000389048	NM_004304.4	1432	Cgg/Tgg																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030560	48030560	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	126	799	0	ENST00000234420.5:c.3174T>A	p.Asp1058Glu	p.D1058E	ENST00000234420	NM_000179.2	1058	gaT/gaA																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030670	48030670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	155	913	3	ENST00000234420.5:c.3284G>A	p.Arg1095His	p.R1095H	ENST00000234420	NM_000179.2	1095	cGc/cAc																																													NEWRECORD																																		
BAP1	8314	MSKCC	GRCh37	3	52441297	52441297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	121	739	0	ENST00000460680.1:c.473G>A	p.Gly158Asp	p.G158D	ENST00000460680	NM_004656.3	158	gGc/gAc																																													NEWRECORD																																		
SOX2	6657	MSKCC	GRCh37	3	181430488	181430488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	126	698	0	ENST00000325404.1:c.340C>T	p.Arg114Trp	p.R114W	ENST00000325404	NM_003106.3	114	Cgg/Tgg																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66356133	66356133	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1349813115		P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	110	714	3	ENST00000273854.3:c.1364G>A	p.Arg455Gln	p.R455Q	ENST00000273854	NM_004439.5	455	cGg/cAg																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153245522	153245522	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	73	607	0	ENST00000281708.4:c.1669G>T	p.Gly557Ter	p.G557*	ENST00000281708	NM_033632.3	557	Gga/Tga																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187628340	187628340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	72	443	2	ENST00000441802.2:c.2642G>A	p.Arg881His	p.R881H	ENST00000441802	NM_005245.3	881	cGc/cAc																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149495484	149495484	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	184	1048	0	ENST00000261799.4:c.3163T>C	p.Ser1055Pro	p.S1055P	ENST00000261799	NM_002609.3	1055	Tcc/Ccc																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176687001	176687001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	122	704	1	ENST00000439151.2:c.4978C>T	p.Arg1660Cys	p.R1660C	ENST00000439151	NM_022455.4	1660	Cgc/Tgc																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176721397	176721397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	107	741	2	ENST00000439151.2:c.7028C>T	p.Pro2343Leu	p.P2343L	ENST00000439151	NM_022455.4	2343	cCc/cTc																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55231457	55231457	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	144	834	0	ENST00000275493.2:c.1663T>C	p.Cys555Arg	p.C555R	ENST00000275493	NM_005228.3	555	Tgc/Cgc																																													NEWRECORD																																		
FANCC	2176	MSKCC	GRCh37	9	97912349	97912349	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182879858		P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	129	634	2	ENST00000289081.3:c.542C>T	p.Ala181Val	p.A181V	ENST00000289081	NM_000136.2	181	gCg/gTg																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133750297	133750297	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	152	839	1	ENST00000318560.5:c.1128G>T	p.Leu376Phe	p.L376F	ENST00000318560	NM_005157.4	376	ttG/ttT																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108198471	108198471	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	95	472	0	ENST00000278616.4:c.7075A>G	p.Thr2359Ala	p.T2359A	ENST00000278616	NM_000051.3	2359	Acc/Gcc																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118344536	118344536	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	156	866	0	ENST00000534358.1:c.2662T>C	p.Ser888Pro	p.S888P	ENST00000534358	NM_005933.3	888	Tca/Cca																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118375783	118375783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	161	847	2	ENST00000534358.1:c.9176C>T	p.Pro3059Leu	p.P3059L	ENST00000534358	NM_005933.3	3059	cCg/cTg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49446768	49446768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	150	769	0	ENST00000301067.7:c.1042C>T	p.Arg348Cys	p.R348C	ENST00000301067	NM_003482.3	348	Cgc/Tgc																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57857515	57857515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1134	474	1119	2	ENST00000228682.2:c.41G>A	p.Gly14Asp	p.G14D	ENST00000228682	NM_005269.2	14	gGc/gAc																																													NEWRECORD																																		
TSHR	7253	MSKCC	GRCh37	14	81610059	81610059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	89	684	0	ENST00000298171.2:c.1657G>A	p.Ala553Thr	p.A553T	ENST00000298171	NM_000369.2	553	Gcc/Acc																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95582935	95582935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	120	675	3	ENST00000343455.3:c.1607G>A	p.Arg536His	p.R536H	ENST00000343455	NM_177438.2	536	cGt/cAt																																													NEWRECORD																																		
IDH2	3418	MSKCC	GRCh37	15	90628530	90628530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	211	865	2	ENST00000330062.3:c.1057C>T	p.Arg353Cys	p.R353C	ENST00000330062	NM_002168.2	353	Cgc/Tgc																																													NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91304459	91304459	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	102	471	0	ENST00000355112.3:c.1856T>G	p.Phe619Cys	p.F619C	ENST00000355112	NM_000057.2	619	tTc/tGc																																													NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	359996	359996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	184	989	4	ENST00000262320.3:c.1093C>T	p.Arg365Trp	p.R365W	ENST00000262320	NM_003502.3	365	Cgg/Tgg																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3781216	3781216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	110	631	1	ENST00000262367.5:c.5149C>T	p.Arg1717Cys	p.R1717C	ENST00000262367	NM_004380.2	1717	Cgc/Tgc																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89845230	89845230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	189	923	3	ENST00000389301.3:c.1805C>T	p.Ala602Val	p.A602V	ENST00000389301	NM_000135.2	602	gCg/gTg																																													NEWRECORD																																		
SUZ12	23512	MSKCC	GRCh37	17	30264357	30264357	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	43	322	0	ENST00000322652.5:c.92T>C	p.Val31Ala	p.V31A	ENST00000322652	NM_015355.2	31	gTg/gCg																																													NEWRECORD																																		
PRKAR1A	5573	MSKCC	GRCh37	17	66526513	66526513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	107	676	0	ENST00000358598.2:c.1069C>T	p.Arg357Cys	p.R357C	ENST00000358598	NM_212471.2	357	Cgt/Tgt																																													NEWRECORD																																		
MAP2K2	5605	MSKCC	GRCh37	19	4117478	4117478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	36	413	0	ENST00000262948.5:c.242G>A	p.Gly81Asp	p.G81D	ENST00000262948	NM_030662.3	81	gGc/gAc																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15299983	15299983	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	108	555	1	ENST00000263388.2:c.1195G>A	p.Ala399Thr	p.A399T	ENST00000263388	NM_000435.2	399	Gcc/Acc																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50917060	50917060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139235742		P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1126	242	1101	3	ENST00000440232.2:c.2312C>T	p.Ala771Val	p.A771V	ENST00000440232	NM_002691.3	771	gCg/gTg																																													NEWRECORD																																		
BCL2L1	598	MSKCC	GRCh37	20	30309724	30309724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	260	626	1	ENST00000307677.4:c.298C>T	p.Arg100Trp	p.R100W	ENST00000307677	NM_138578.1	100	Cgg/Tgg																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41513539	41513539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	128	723	5	ENST00000263253.7:c.443C>T	p.Thr148Met	p.T148M	ENST00000263253	NM_001429.3	148	aCg/aTg																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70340958	70340958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	191	896	0	ENST00000374080.3:c.691C>T	p.Arg231Trp	p.R231W	ENST00000374080		231	Cgg/Tgg																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3824569	3824569	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	97	646	0	ENST00000262367.5:c.2283+1del		p.X761_splice	ENST00000262367	NM_004380.2	761																																														NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46245739	46245739	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	264	714	1	ENST00000334344.6:c.3834del	p.Ser1279AlafsTer16	p.S1279Afs*16	ENST00000334344	NM_152641.2	1278	aCc/ac																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30729880	30729881	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	46	315	0	ENST00000359013.4:c.1478_1479delAA	p.Lys493ArgfsTer3	p.K493Rfs*3	ENST00000359013	NM_001024847.2	492	gtAAaa/gtaa																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72829585	72829585	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1148	192	1191	1	ENST00000268489.5:c.6996delA	p.Lys2332AsnfsTer44	p.K2332Nfs*44	ENST00000268489	NM_006885.3	2332	aaA/aa																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18435201	18435202	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	130	742	0	ENST00000266497.5:c.192dup	p.Val65CysfsTer16	p.V65Cfs*16	ENST00000266497		62	-/T																																													NEWRECORD																																		
REL	5966	MSKCC	GRCh37	2	61147771	61147771	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	65	364	0	ENST00000295025.8:c.1086delA	p.Glu363AsnfsTer11	p.E363Nfs*11	ENST00000295025	NM_002908.2	361	Aaa/aa																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76855019	76855019	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	127	913	4	ENST00000373344.5:c.5817del	p.Asp1940IlefsTer15	p.D1940Ifs*15	ENST00000373344	NM_000489.3	1939	aaA/aa																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138413710	138413710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	125	550	7	ENST00000289153.2:c.1810delC	p.Arg604GlyfsTer4	p.R604Gfs*4	ENST00000289153	NM_006219.2	604	Cgg/gg																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156846336	156846336	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781209572		P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	140	435	2	ENST00000524377.1:c.1777C>T	p.Arg593Trp	p.R593W	ENST00000524377	NM_002529.3	593	Cgg/Tgg																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202149973	202149973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	85	368	2	ENST00000358485.4:c.1414C>T	p.Arg472Ter	p.R472*	ENST00000358485	NM_001080125.1	472	Cga/Tga																																													NEWRECORD																																		
IDH1	3417	MSKCC	GRCh37	2	209104677	209104677	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	144	393	0	ENST00000345146.2:c.901A>G	p.Lys301Glu	p.K301E	ENST00000345146	NM_005896.2	301	Aag/Gag																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225370792	225370792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	233	445	0	ENST00000264414.4:c.1087G>A	p.Asp363Asn	p.D363N	ENST00000264414	NM_003590.4	363	Gac/Aac																																													NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242794773	242794773	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	32	178	0	ENST00000334409.5:c.436G>T	p.Glu146Ter	p.E146*	ENST00000334409	NM_005018.2	146	Gag/Tag																																													NEWRECORD																																		
MYD88	4615	MSKCC	GRCh37	3	38180190	38180190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	34	303	0	ENST00000396334.3:c.38C>T	p.Ala13Val	p.A13V	ENST00000396334	NM_002468.4	13	gCc/gTc																																													NEWRECORD																																		
GSK3B	2932	MSKCC	GRCh37	3	119666150	119666150	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	137	409	2	ENST00000316626.5:c.331C>T	p.Arg111Ter	p.R111*	ENST00000316626		111	Cga/Tga																																													NEWRECORD																																		
GATA2	2624	MSKCC	GRCh37	3	128202731	128202731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	162	434	0	ENST00000341105.2:c.989G>A	p.Arg330Gln	p.R330Q	ENST00000341105	NM_032638.4	330	cGa/cAa																																													NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1808373	1808373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	27	403	0	ENST00000260795.2:c.2131C>A	p.His711Asn	p.H711N	ENST00000260795		711	Cac/Aac																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153332936	153332936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	65	216	0	ENST00000281708.4:c.20C>A	p.Ser7Tyr	p.S7Y	ENST00000281708	NM_033632.3	7	tCt/tAt																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187518309	187518309	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs191917852		P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	25	79	0	ENST00000441802.2:c.12385G>A	p.Asp4129Asn	p.D4129N	ENST00000441802	NM_005245.3	4129	Gac/Aac																																													NEWRECORD																																		
IRF4	3662	MSKCC	GRCh37	6	393357	393357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	155	326	0	ENST00000380956.4:c.205G>A	p.Ala69Thr	p.A69T	ENST00000380956	NM_001195286.1	69	Gcg/Acg																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32181031	32181031	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	136	326	0	ENST00000375023.3:c.2321-2A>G		p.X774_splice	ENST00000375023	NM_004557.3	774																																														NEWRECORD																																		
DAXX	1616	MSKCC	GRCh37	6	33286841	33286841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	103	267	0	ENST00000374542.5:c.2096G>A	p.Cys699Tyr	p.C699Y	ENST00000374542	NM_001141970.1	699	tGc/tAc																																													NEWRECORD																																		
FYN	2534	MSKCC	GRCh37	6	112020823	112020823	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1131	457	826	1	ENST00000368678.4:c.748A>G	p.Thr250Ala	p.T250A	ENST00000368678		250	Acc/Gcc																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	150005305	150005305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	190	456	0	ENST00000253339.5:c.920C>T	p.Thr307Ile	p.T307I	ENST00000253339		307	aCt/aTt																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	138	356	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90958499	90958499	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	105	297	2	ENST00000265433.3:c.1939A>G	p.Ser647Gly	p.S647G	ENST00000265433	NM_002485.4	647	Agt/Ggt																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8376681	8376681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	91	389	0	ENST00000356435.5:c.4432G>A	p.Gly1478Arg	p.G1478R	ENST00000356435		1478	Gga/Aga																																													NEWRECORD																																		
NTRK2	4915	MSKCC	GRCh37	9	87482247	87482247	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	156	507	0	ENST00000277120.3:c.1534G>T	p.Gly512Cys	p.G512C	ENST00000277120		512	Ggt/Tgt																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8100462	8100462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	141	521	0	ENST00000346208.3:c.436G>A	p.Ala146Thr	p.A146T	ENST00000346208		146	Gcc/Acc																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43615128	43615128	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	64	484	0	ENST00000355710.3:c.2542A>G	p.Met848Val	p.M848V	ENST00000355710	NM_020975.4	848	Atg/Gtg																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46245682	46245682	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	186	472	0	ENST00000334344.6:c.3776A>G	p.His1259Arg	p.H1259R	ENST00000334344	NM_152641.2	1259	cAt/cGt																																													NEWRECORD																																		
NKX2-1	7080	MSKCC	GRCh37	14	36986668	36986668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			14	17	14	0	ENST00000354822.5:c.1021G>A	p.Ala341Thr	p.A341T	ENST00000354822	NM_001079668.2	341	Gcc/Acc																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95560488	95560488	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	18	106	0	ENST00000343455.3:c.5101T>C	p.Tyr1701His	p.Y1701H	ENST00000343455	NM_177438.2	1701	Tac/Cac																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42000406	42000406	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			938	94	552	0	ENST00000219905.7:c.2425G>T	p.Gly809Cys	p.G809C	ENST00000219905	NM_001164273.1	809	Ggt/Tgt																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9857925	9857925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	129	363	0	ENST00000330684.3:c.3476G>A	p.Arg1159His	p.R1159H	ENST00000330684	NM_001134407.1	1159	cGc/cAc																																													NEWRECORD																																		
NUP93	9688	MSKCC	GRCh37	16	56871563	56871563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	111	655	0	ENST00000308159.5:c.1943C>A	p.Pro648His	p.P648H	ENST00000308159	NM_014669.4	648	cCt/cAt																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	288	471	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5231506	5231506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	223	429	2	ENST00000357368.4:c.1970G>A	p.Arg657His	p.R657H	ENST00000357368	NM_002850.3	657	cGc/cAc																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7117408	7117408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	52	263	0	ENST00000302850.5:c.3808C>T	p.Arg1270Cys	p.R1270C	ENST00000302850	NM_000208.2	1270	Cgc/Tgc																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10602707	10602707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	156	383	0	ENST00000171111.5:c.871C>A	p.Leu291Met	p.L291M	ENST00000171111	NM_203500.1	291	Ctg/Atg																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11098557	11098557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	150	416	1	ENST00000344626.4:c.1075C>T	p.Arg359Trp	p.R359W	ENST00000344626	NM_003072.3	359	Cgg/Tgg																																													NEWRECORD																																		
AURKA	6790	MSKCC	GRCh37	20	54963247	54963247	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	126	464	0	ENST00000312783.6:c.7C>T	p.Arg3Ter	p.R3*	ENST00000312783	NM_198436.1	3	Cga/Tga																																													NEWRECORD																																		
SMARCB1	6598	MSKCC	GRCh37	22	24159023	24159023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	130	376	0	ENST00000263121.7:c.695C>T	p.Thr232Met	p.T232M	ENST00000263121	NM_003073.3	232	aCg/aTg																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47030658	47030658	+	intron_variant	Intron	SNP	G	G	A	rs782679832		P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	35	361	2	ENST00000329236.7:c.201+1761G>A		p.*67*	ENST00000329236	NM_001204466.1																																															NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108205782	108205782	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	116	388	0	ENST00000278616.4:c.8101del	p.Ile2701Ter	p.I2701*	ENST00000278616	NM_000051.3	2699	ccA/cc																																													NEWRECORD																																		
PARP1	142	MSKCC	GRCh37	1	226570840	226570841	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	C			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	48	276	0	ENST00000366794.5:c.1055_1056delinsG	p.Lys352SerfsTer29	p.K352Sfs*29	ENST00000366794	NM_001618.3	352	aAA/aG																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	128	205	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202149799	202149799	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	60	382	0	ENST00000358485.4:c.1245delT	p.Phe415LeufsTer26	p.F415Lfs*26	ENST00000358485	NM_001080125.1	414	Ttt/tt																																													NEWRECORD																																		
DCUN1D1	54165	MSKCC	GRCh37	3	182683472	182683472	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	118	396	0	ENST00000292782.4:c.73delA	p.Thr25GlnfsTer3	p.T25Qfs*3	ENST00000292782	NM_020640.2	25	Aca/ca																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23647028	23647028	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	155	436	0	ENST00000261584.4:c.839del	p.Asn280ThrfsTer8	p.N280Tfs*8	ENST00000261584	NM_024675.3	280	aAc/ac																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	245	608	5	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																													NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	282	480	6	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																													NEWRECORD																																		
IFNGR1	3459	MSKCC	GRCh37	6	137519505	137519506	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs780346130		P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	180	367	2	ENST00000367739.4:c.1132_1133del	p.Ser378PhefsTer6	p.S378Ffs*6	ENST00000367739	NM_000416.2	378	AGt/t																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	102	671	1	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52584583	52584583	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	39	494	0	ENST00000394830.3:c.4430del	p.Pro1477LeufsTer12	p.P1477Lfs*12	ENST00000394830	NM_018313.4	1477	cCt/ct																																													NEWRECORD																																		
SH2B3	10019	MSKCC	GRCh37	12	111885939	111885939	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	565	654	0	ENST00000341259.2:c.1566del	p.Glu523SerfsTer25	p.E523Sfs*25	ENST00000341259	NM_005475.2	521	Ccc/cc																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	129	400	6	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	73	280	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	73	158	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																													NEWRECORD																																		
PARP1	142	MSKCC	GRCh37	1	226567719	226567719	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	86	431	1	ENST00000366794.5:c.1447delG	p.Ala483GlnfsTer3	p.A483Qfs*3	ENST00000366794	NM_001618.3	483	Gca/ca																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	81	304	3	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007579-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	127	351	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519925		P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	152	303	0	ENST00000263967.3:c.1357G>C	p.Glu453Gln	p.E453Q	ENST00000263967	NM_006218.2	453	Gaa/Caa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578499	7578499	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	405	408	1	ENST00000269305.4:c.431A>C	p.Gln144Pro	p.Q144P	ENST00000269305	NM_001126112.2	144	cAg/cCg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27058079	27058079	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	66	95	0	ENST00000324856.7:c.1787G>T	p.Arg596Leu	p.R596L	ENST00000324856	NM_006015.4	596	cGc/cTc																																													NEWRECORD																																		
INSRR	3645	MSKCC	GRCh37	1	156811503	156811503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	36	37	0	ENST00000368195.3:c.3481C>A	p.Pro1161Thr	p.P1161T	ENST00000368195	NM_014215.2	1161	Ccc/Acc																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29541241	29541241	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1239	115	375	0	ENST00000389048.3:c.1576G>T	p.Val526Phe	p.V526F	ENST00000389048	NM_004304.4	526	Gtc/Ttc																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212537945	212537945	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	411	378	0	ENST00000342788.4:c.1660G>T	p.Glu554Ter	p.E554*	ENST00000342788	NM_005235.2	554	Gag/Tag																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157192782	157192782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	373	395	0	ENST00000346085.5:c.1772G>T	p.Trp591Leu	p.W591L	ENST00000346085	NM_020732.3	591	tGg/tTg																																													NEWRECORD																																		
SYK	6850	MSKCC	GRCh37	9	93606188	93606188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	312	245	0	ENST00000375746.1:c.8G>A	p.Ser3Asn	p.S3N	ENST00000375746	NM_001174167.1	3	aGc/aAc																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108201002	108201002	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	179	308	0	ENST00000278616.4:c.7369G>C	p.Glu2457Gln	p.E2457Q	ENST00000278616	NM_000051.3	2457	Gag/Cag																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133248867	133248867	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1310	265	402	1	ENST00000320574.5:c.1728G>T	p.Lys576Asn	p.K576N	ENST00000320574	NM_006231.2	576	aaG/aaT																																													NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28610105	28610105	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1703	114	493	0	ENST00000241453.7:c.1385G>A	p.Trp462Ter	p.W462*	ENST00000241453	NM_004119.2	462	tGg/tAg																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	49039133	49039133	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	224	146	1	ENST00000267163.4:c.2212-1G>A		p.X738_splice	ENST00000267163	NM_000321.2	738																																														NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99465517	99465517	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1374	243	467	0	ENST00000268035.6:c.2342G>C	p.Arg781Thr	p.R781T	ENST00000268035	NM_000875.3	781	aGa/aCa																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1206915	1206915	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	111	161	0	ENST00000326873.7:c.3G>A	p.Met1?	p.M1?	ENST00000326873	NM_000455.4	1	atG/atA																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11144179	11144179	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	309	293	0	ENST00000344626.4:c.3760G>T	p.Glu1254Ter	p.E1254*	ENST00000344626	NM_003072.3	1254	Gag/Tag																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40757449	40757449	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1689	243	444	0	ENST00000373198.4:c.2849T>C	p.Leu950Pro	p.L950P	ENST00000373198	NM_133170.3	950	cTg/cCg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49444986	49444987	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	96	171	0	ENST00000301067.7:c.2479dup	p.Gln827ProfsTer3	p.Q827Pfs*3	ENST00000301067	NM_003482.3	827	caa/cCaa																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48955550	48955550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	383	327	0	ENST00000267163.4:c.1666C>T	p.Arg556Ter	p.R556*	ENST00000267163	NM_000321.2	556	Cga/Tga																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0010518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			62	37	83	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	768	427	0	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt																																													NEWRECORD																																		
TMPRSS2	7113	MSKCC	GRCh37	21	42866376	42866376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	694	307	3	ENST00000398585.3:c.256G>A	p.Val86Met	p.V86M	ENST00000398585	NM_001135099.1	86	Gtg/Atg																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8389254	8389254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	277	418	1	ENST00000356435.5:c.4364C>A	p.Thr1455Lys	p.T1455K	ENST00000356435		1455	aCa/aAa																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38060643	38060643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1528	529	599	0	ENST00000250448.2:c.1346C>T	p.Pro449Leu	p.P449L	ENST00000250448	NM_004496.3	449	cCc/cTc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112176675	112176676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	220	332	0	ENST00000257430.4:c.5390dup	p.Asn1797LysfsTer2	p.N1797Kfs*2	ENST00000257430	NM_000038.5	1795	tca/tcAa																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	93	387	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56179386	56179386	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	55	324	0	ENST00000399503.3:c.3702del	p.Lys1234AsnfsTer11	p.K1234Nfs*11	ENST00000399503	NM_005921.1	1233	gcA/gc																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56152532	56152533	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	34	308	0	ENST00000399503.3:c.589dup	p.Trp197LeufsTer11	p.W197Lfs*11	ENST00000399503	NM_005921.1	196	-/T																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29652971	29652971	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004982-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	55	413	0	ENST00000358273.4:c.4969G>C	p.Asp1657His	p.D1657H	ENST00000358273	NM_001042492.2	1657	Gac/Cac																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115957	8115958	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGTGG			P-0004982-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	145	162	0	ENST00000346208.3:c.1303_1304insGGTGG	p.Pro435ArgfsTer42	p.P435Rfs*42	ENST00000346208		435	ccc/cGGTGGcc																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	230	530	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	305	538	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	178	939	2	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	309	791	1	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41744048	41744048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	149	780	0	ENST00000301178.4:c.983C>T	p.Thr328Met	p.T328M	ENST00000301178	NM_021913.4	328	aCg/aTg																																													NEWRECORD																																		
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	132	548	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	154	402	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30671004	30671005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	130	688	0	ENST00000376406.3:c.5741dup	p.Ser1915LysfsTer15	p.S1915Kfs*15	ENST00000376406	NM_014641.2	1914	gga/ggGa																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187521298	187521299	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	155	989	0	ENST00000441802.2:c.11856dupT	p.Gly3953TrpfsTer19	p.G3953Wfs*19	ENST00000441802	NM_005245.3	3952	-/T																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47702265	47702265	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	236	742	2	ENST00000233146.2:c.1861C>T	p.Arg621Ter	p.R621*	ENST00000233146	NM_000251.2	621	Cga/Tga																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	63	866	2	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																													NEWRECORD																																		
ETV6	2120	MSKCC	GRCh37	12	12037474	12037474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	105	582	0	ENST00000396373.4:c.1105C>T	p.Arg369Trp	p.R369W	ENST00000396373	NM_001987.4	369	Cgg/Tgg																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38950625	38950626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1127	220	1028	0	ENST00000357387.3:c.3324dup	p.His1109ThrfsTer3	p.H1109Tfs*3	ENST00000357387	NM_152756.3	1108	-/A																																													NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	79	472	1	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27100195	27100195	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	110	452	1	ENST00000324856.7:c.3991C>T	p.Gln1331Ter	p.Q1331*	ENST00000324856	NM_006015.4	1331	Cag/Tag																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42794441	42794441	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	258	1187	2	ENST00000575354.2:c.1526delC	p.Pro509HisfsTer14	p.P509Hfs*14	ENST00000575354	NM_015125.3	507	cgC/cg																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	127	688	1	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98240375	98240375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	136	585	1	ENST00000331920.6:c.1309G>A	p.Val437Ile	p.V437I	ENST00000331920	NM_000264.3	437	Gtc/Atc																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27097609	27097609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	83	686	0	ENST00000324856.7:c.3199-1G>A		p.X1067_splice	ENST00000324856	NM_006015.4	1067																																														NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15366129	15366129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	49	695	0	ENST00000263377.2:c.2026C>T	p.Arg676Trp	p.R676W	ENST00000263377	NM_058243.2	676	Cgg/Tgg																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157100302	157100302	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	88	474	0	ENST00000346085.5:c.1243delG	p.Ala415ProfsTer15	p.A415Pfs*15	ENST00000346085	NM_020732.3	413	tcG/tc																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11184622	11184622	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	186	745	1	ENST00000361445.4:c.6595A>G	p.Met2199Val	p.M2199V	ENST00000361445	NM_004958.3	2199	Atg/Gtg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106978	27106978	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	88	430	2	ENST00000324856.7:c.6589G>T	p.Gly2197Cys	p.G2197C	ENST00000324856	NM_006015.4	2197	Ggc/Tgc																																													NEWRECORD																																		
RFWD2	64326	MSKCC	GRCh37	1	176085815	176085815	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	119	519	0	ENST00000367669.3:c.971G>A	p.Ser324Asn	p.S324N	ENST00000367669	NM_022457.5	324	aGt/aAt																																													NEWRECORD																																		
SDHAF2	54949	MSKCC	GRCh37	11	61205115	61205115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	160	712	1	ENST00000301761.2:c.55C>A	p.His19Asn	p.H19N	ENST00000301761	NM_017841.2	19	Cac/Aac																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46233265	46233265	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	65	594	0	ENST00000334344.6:c.1484T>C	p.Val495Ala	p.V495A	ENST00000334344	NM_152641.2	495	gTa/gCa																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49425986	49425986	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	53	891	0	ENST00000301067.7:c.12502A>G	p.Thr4168Ala	p.T4168A	ENST00000301067	NM_003482.3	4168	Aca/Gca																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49426973	49426973	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	59	515	3	ENST00000301067.7:c.11515del	p.Gln3839SerfsTer42	p.Q3839Sfs*42	ENST00000301067	NM_003482.3	3839	Cag/ag																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49448480	49448480	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	67	676	0	ENST00000301067.7:c.231del	p.His77GlnfsTer53	p.H77Qfs*53	ENST00000301067	NM_003482.3	77	caC/ca																																													NEWRECORD																																		
PTPN11	5781	MSKCC	GRCh37	12	112939969	112939969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs186919241		P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	161	658	0	ENST00000351677.2:c.1621G>A	p.Glu541Lys	p.E541K	ENST00000351677	NM_002834.3	541	Gaa/Aaa																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133236017	133236017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	147	649	1	ENST00000320574.5:c.3139G>A	p.Gly1047Arg	p.G1047R	ENST00000320574	NM_006231.2	1047	Ggg/Agg																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48878077	48878082	+	inframe_deletion	In_Frame_Del	DEL	CCGCCA	CCGCCA	-			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	45	284	0	ENST00000267163.4:c.34_39del	p.Thr12_Ala13del	p.T12_A13del	ENST00000267163	NM_000321.2	10	gCCGCCAcc/gcc																																													NEWRECORD																																		
TSHR	7253	MSKCC	GRCh37	14	81422179	81422179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	109	541	1	ENST00000298171.2:c.155C>A	p.Pro52His	p.P52H	ENST00000298171	NM_000369.2	52	cCc/cAc																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89351547	89351547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1228	399	1291	0	ENST00000301030.4:c.1403G>A	p.Arg468His	p.R468H	ENST00000301030	NM_001256183.1	468	cGc/cAc																																													NEWRECORD																																		
STAT5A	6776	MSKCC	GRCh37	17	40456579	40456579	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	255	1103	0	ENST00000345506.4:c.1292del	p.Gly431ValfsTer5	p.G431Vfs*5	ENST00000345506	NM_003152.3	430	cGg/cg																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5243963	5243963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	98	563	2	ENST00000357368.4:c.1519G>A	p.Val507Ile	p.V507I	ENST00000357368	NM_002850.3	507	Gtc/Atc																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11123674	11123674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	181	706	0	ENST00000344626.4:c.2324G>A	p.Gly775Asp	p.G775D	ENST00000344626	NM_003072.3	775	gGc/gAc																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11135100	11135100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	131	496	1	ENST00000344626.4:c.3067G>A	p.Glu1023Lys	p.E1023K	ENST00000344626	NM_003072.3	1023	Gag/Aag																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41744384	41744384	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	180	976	1	ENST00000301178.4:c.1004G>C	p.Gly335Ala	p.G335A	ENST00000301178	NM_021913.4	335	gGc/gCc																																													NEWRECORD																																		
ERCC2	2068	MSKCC	GRCh37	19	45860625	45860625	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1096	99	1107	0	ENST00000391945.4:c.1382T>G	p.Leu461Arg	p.L461R	ENST00000391945	NM_000400.3	461	cTg/cGg																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47635626	47635626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	58	674	0	ENST00000233146.2:c.298G>A	p.Val100Ile	p.V100I	ENST00000233146	NM_000251.2	100	Gtt/Att																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47637495	47637496	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	100	489	0	ENST00000233146.2:c.633dup	p.Lys212GlufsTer20	p.K212Efs*20	ENST00000233146	NM_000251.2	210	atg/atGg																																													NEWRECORD																																		
ACVR1	90	MSKCC	GRCh37	2	158655990	158655990	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1165	237	1110	0	ENST00000263640.3:c.16A>G	p.Met6Val	p.M6V	ENST00000263640	NM_001105.4	6	Atg/Gtg																																													NEWRECORD																																		
U2AF1	7307	MSKCC	GRCh37	21	44514591	44514591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	101	497	0	ENST00000291552.4:c.565C>T	p.Arg189Cys	p.R189C	ENST00000291552	NM_006758.2	189	Cgt/Tgt																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41566534	41566535	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	59	764	1	ENST00000263253.7:c.4413dup	p.Asp1472Ter	p.D1472*	ENST00000263253	NM_001429.3	1471	ctt/cTtt																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138433521	138433523	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	104	448	0	ENST00000289153.2:c.1089_1091del	p.Leu364del	p.L364del	ENST00000289153	NM_006219.2	363	ctCCTg/ctg																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142232479	142232479	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	111	492	0	ENST00000350721.4:c.4505T>C	p.Val1502Ala	p.V1502A	ENST00000350721	NM_001184.3	1502	gTt/gCt																																													NEWRECORD																																		
KIT	3815	MSKCC	GRCh37	4	55594094	55594094	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	116	535	4	ENST00000288135.5:c.1879+1G>A		p.X627_splice	ENST00000288135	NM_000222.2	627																																														NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66213842	66213842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	176	838	0	ENST00000273854.3:c.2588G>A	p.Ser863Asn	p.S863N	ENST00000273854	NM_004439.5	863	aGt/aAt																																													NEWRECORD																																		
SDHA	6389	MSKCC	GRCh37	5	236621	236621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	92	457	0	ENST00000264932.6:c.1339C>T	p.His447Tyr	p.H447Y	ENST00000264932	NM_004168.2	447	Cat/Tat																																													NEWRECORD																																		
DAXX	1616	MSKCC	GRCh37	6	33288177	33288177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	79	450	0	ENST00000374542.5:c.1231G>T	p.Ala411Ser	p.A411S	ENST00000374542	NM_001141970.1	411	Gcc/Tcc																																													NEWRECORD																																		
TNFAIP3	7128	MSKCC	GRCh37	6	138200107	138200107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	76	351	1	ENST00000237289.4:c.1525G>A	p.Ala509Thr	p.A509T	ENST00000237289	NM_001270507.1	509	Gcc/Acc																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81339535	81339535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	363	876	3	ENST00000222390.5:c.1469C>T	p.Thr490Met	p.T490M	ENST00000222390	NM_000601.4	490	aCg/aTg																																													NEWRECORD																																		
CDK6	1021	MSKCC	GRCh37	7	92247489	92247489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	89	752	2	ENST00000265734.4:c.731C>T	p.Pro244Leu	p.P244L	ENST00000265734	NM_001259.6	244	cCt/cTt																																													NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90965798	90965798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	56	555	0	ENST00000265433.3:c.1519C>T	p.His507Tyr	p.H507Y	ENST00000265433	NM_002485.4	507	Cat/Tat																																													NEWRECORD																																		
NTRK2	4915	MSKCC	GRCh37	9	87342610	87342610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	130	582	2	ENST00000277120.3:c.895C>T	p.His299Tyr	p.H299Y	ENST00000277120		299	Cac/Tac																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39913264	39913265	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	204	953	0	ENST00000378444.4:c.4850dup	p.Leu1617PhefsTer12	p.L1617Ffs*12	ENST00000378444	NM_001123385.1	1617	tta/ttTa																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32190405	32190405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	140	685	0	ENST00000375023.3:c.334G>A	p.Glu112Lys	p.E112K	ENST00000375023	NM_004557.3	112	Gag/Aag																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	176	396	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43596108	43596108	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	279	520	0	ENST00000355710.3:c.275C>G	p.Thr92Ser	p.T92S	ENST00000355710	NM_020975.4	92	aCc/aGc																																													NEWRECORD																																		
EPAS1	2034	MSKCC	GRCh37	2	46607697	46607697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	568	583	0	ENST00000263734.3:c.1886C>T	p.Ser629Phe	p.S629F	ENST00000263734	NM_001430.4	629	tCt/tTt																																													NEWRECORD																																		
PLK2	10769	MSKCC	GRCh37	5	57753336	57753336	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	71	397	0	ENST00000274289.3:c.788T>G	p.Ile263Ser	p.I263S	ENST00000274289	NM_006622.3	263	aTt/aGt																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86670138	86670139	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0014473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	124	325	0	ENST00000274376.6:c.1934+2dup		p.X645_splice	ENST00000274376	NM_002890.2	645																																														NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116411886	116411901	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TTTCTCTCTGTTTTAA	TTTCTCTCTGTTTTAA	-			P-0014473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	644	716	0	ENST00000397752.3:c.2888-17_2888-2del		p.X963_splice	ENST00000397752	NM_000245.2	963																																														NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	36	276	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212989581	212989581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	33	358	2	ENST00000342788.4:c.130C>A	p.Gln44Lys	p.Q44K	ENST00000342788	NM_005235.2	44	Cag/Aag																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023485	27023486	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1202	66	762	0	ENST00000324856.7:c.595dup	p.Gln199ProfsTer201	p.Q199Pfs*201	ENST00000324856	NM_006015.4	197	-/C																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38064170	38064170	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	61	655	0	ENST00000250448.2:c.8del	p.Gly3GlufsTer3	p.G3Efs*3	ENST00000250448	NM_004496.3	3	gGa/ga																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1570	156	871	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157100117	157100119	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs1450867853		P-0005720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	10	58	0	ENST00000346085.5:c.1069_1071del	p.Gly357del	p.G357del	ENST00000346085	NM_020732.3	352	GGC/-																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578467	7578468	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCGGGC			P-0005720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2070	219	1022	0	ENST00000269305.4:c.456_462dup	p.Thr155AlafsTer28	p.T155Afs*28	ENST00000269305	NM_001126112.2	154	-/GCCCGGC																																													NEWRECORD																																		
AURKA	6790	MSKCC	GRCh37	20	54958225	54958226	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1687	200	711	0	ENST00000312783.6:c.381dup	p.Trp128ValfsTer7	p.W128Vfs*7	ENST00000312783	NM_198436.1	127	-/G																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	644	347	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0009488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	131	267	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0009488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	229	404	2	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30713883	30713883	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143095746		P-0009488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	67	285	0	ENST00000359013.4:c.1283G>A	p.Arg428His	p.R428H	ENST00000359013	NM_001024847.2	428	cGt/cAt																																													NEWRECORD																																		
IRF4	3662	MSKCC	GRCh37	6	394941	394941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	146	248	0	ENST00000380956.4:c.337C>T	p.Arg113Trp	p.R113W	ENST00000380956	NM_001195286.1	113	Cgg/Tgg																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604797	48604797	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	172	324	0	ENST00000342988.3:c.1619T>A	p.Leu540His	p.L540H	ENST00000342988	NM_005359.5	540	cTt/cAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174505	112174505	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	CGTACAAC			P-0009488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	100	297	0	ENST00000257430.4:c.3214delinsCGTACAAC	p.Ser1072ArgfsTer11	p.S1072Rfs*11	ENST00000257430	NM_000038.5	1072	Agt/CGTACAACgt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	59	354	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577562	7577563	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGT			P-0006013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	38	375	0	ENST00000269305.4:c.716_718dup	p.Asn239dup	p.N239dup	ENST00000269305	NM_001126112.2	239	agt/aACAgt																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	184	371	0	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	282	425	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	276	506	2	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	280	525	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																													NEWRECORD																																		
IKBKE	9641	MSKCC	GRCh37	1	206647788	206647788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	296	461	0	ENST00000367120.3:c.202G>A	p.Val68Ile	p.V68I	ENST00000367120	NM_014002.3	68	Gtc/Atc																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	104	399	2	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	67	232	3	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	317	316	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
PAX5	5079	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs926053251		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	363	552	0	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	134	335	1	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	222	424	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																													NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1114	451	561	0	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	40	119	0	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	283	447	1	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	157	187	7	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																													NEWRECORD																																		
NCOA3	8202	MSKCC	GRCh37	20	46256424	46256424	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs6094752		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1203	489	788	0	ENST00000371998.3:c.652C>T	p.Arg218Cys	p.R218C	ENST00000371998		218	Cgc/Tgc																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	302	488	7	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47084146	47084146	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	145	444	0	ENST00000409792.3:c.7143del	p.Ser2382LeufsTer29	p.S2382Lfs*29	ENST00000409792	NM_014159.6	2381	ccC/cc																																													NEWRECORD																																		
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			959	193	744	4	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	373	426	6	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	371	568	3	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	413	607	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45391501	45391501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	204	332	1	ENST00000262160.6:c.659C>T	p.Thr220Met	p.T220M	ENST00000262160	NM_005901.5	220	aCg/aTg																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72993849	72993849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	329	599	1	ENST00000268489.5:c.196G>A	p.Ala66Thr	p.A66T	ENST00000268489	NM_006885.3	66	Gcg/Acg																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42796882	42796883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1308	255	608	2	ENST00000575354.2:c.3347dupC	p.Ser1117LysfsTer34	p.S1117Kfs*34	ENST00000575354	NM_015125.3	1114	gcc/gCcc																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187542110	187542110	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	128	393	0	ENST00000441802.2:c.5630del	p.Pro1877LeufsTer20	p.P1877Lfs*20	ENST00000441802	NM_005245.3	1877	cCt/ct																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11141507	11141507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	326	489	0	ENST00000344626.4:c.3484G>A	p.Gly1162Ser	p.G1162S	ENST00000344626	NM_003072.3	1162	Ggc/Agc																																													NEWRECORD																																		
MDM2	4193	MSKCC	GRCh37	12	69233090	69233090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	292	374	1	ENST00000462284.1:c.961delC	p.Leu321PhefsTer52	p.L321Ffs*52	ENST00000462284	NM_002392.5	319	Ccc/cc																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1095	311	520	6	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187518306	187518306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	53	130	0	ENST00000441802.2:c.12388G>A	p.Glu4130Lys	p.E4130K	ENST00000441802	NM_005245.3	4130	Gag/Aag																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30713742	30713742	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	182	307	1	ENST00000359013.4:c.1142G>C	p.Arg381Pro	p.R381P	ENST00000359013	NM_001024847.2	381	cGg/cCg																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32169116	32169116	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	211	454	2	ENST00000375023.3:c.3917delC	p.Pro1306GlnfsTer3	p.P1306Qfs*3	ENST00000375023	NM_004557.3	1306	cCa/ca																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81969882	81969882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1146	513	633	2	ENST00000359376.3:c.2951G>A	p.Arg984His	p.R984H	ENST00000359376	NM_002661.3	984	cGc/cAc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	346	425	0	ENST00000269305.4:c.400T>C	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	Ttt/Ctt																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98209652	98209652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	123	278	0	ENST00000331920.6:c.3886G>A	p.Gly1296Arg	p.G1296R	ENST00000331920	NM_000264.3	1296	Gga/Aga																																													NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64138915	64138915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	41	422	0	ENST00000334205.4:c.2287delC	p.Arg763AlafsTer21	p.R763Afs*21	ENST00000334205	NM_003942.2	761	gCc/gc																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42799131	42799131	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	224	363	0	ENST00000575354.2:c.4620delC	p.Thr1541LeufsTer79	p.T1541Lfs*79	ENST00000575354	NM_015125.3	1539	Ccc/cc																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16256846	16256846	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	145	354	0	ENST00000375759.3:c.4111C>T	p.Arg1371Ter	p.R1371*	ENST00000375759	NM_015001.2	1371	Cga/Tga																																													NEWRECORD																																		
FAM46C	54855	MSKCC	GRCh37	1	118166214	118166214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	266	447	2	ENST00000369448.3:c.724G>A	p.Gly242Arg	p.G242R	ENST00000369448	NM_017709.3	242	Ggg/Agg																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156851394	156851394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	260	459	0	ENST00000524377.1:c.2351T>C	p.Leu784Pro	p.L784P	ENST00000524377	NM_002529.3	784	cTg/cCg																																													NEWRECORD																																		
HIST3H3	8290	MSKCC	GRCh37	1	228612869	228612869	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201904037		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1225	391	797	1	ENST00000366696.1:c.158G>A	p.Arg53His	p.R53H	ENST00000366696	NM_003493.2	53	cGc/cAc																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47098598	47098598	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	315	456	1	ENST00000409792.3:c.6676G>T	p.Val2226Leu	p.V2226L	ENST00000409792	NM_014159.6	2226	Gtg/Ttg																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143045875	143045875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	246	494	0	ENST00000262992.4:c.1759C>A	p.Leu587Met	p.L587M	ENST00000262992	NM_001101669.1	587	Ctg/Atg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112177540	112177540	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	122	271	0	ENST00000257430.4:c.6249A>G	p.Ile2083Met	p.I2083M	ENST00000257430	NM_000038.5	2083	atA/atG																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149504392	149504392	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	125	387	0	ENST00000261799.4:c.1810C>T	p.Arg604Cys	p.R604C	ENST00000261799	NM_002609.3	604	Cgc/Tgc																																													NEWRECORD																																		
FGFR4	2264	MSKCC	GRCh37	5	176522591	176522591	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139461102		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	307	532	0	ENST00000292408.4:c.1688G>A	p.Arg563Gln	p.R563Q	ENST00000292408	NM_213647.1	563	cGg/cAg																																													NEWRECORD																																		
FGFR4	2264	MSKCC	GRCh37	5	176522695	176522695	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	321	462	1	ENST00000292408.4:c.1792C>T	p.Arg598Ter	p.R598*	ENST00000292408	NM_213647.1	598	Cga/Tga																																													NEWRECORD																																		
FGFR4	2264	MSKCC	GRCh37	5	176523068	176523068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	84	335	0	ENST00000292408.4:c.1832G>A	p.Arg611Gln	p.R611Q	ENST00000292408	NM_213647.1	611	cGg/cAg																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32163737	32163737	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	210	367	0	ENST00000375023.3:c.5489A>G	p.Lys1830Arg	p.K1830R	ENST00000375023	NM_004557.3	1830	aAa/aGa																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117632201	117632201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	241	438	1	ENST00000368508.3:c.6215G>A	p.Arg2072Gln	p.R2072Q	ENST00000368508	NM_002944.2	2072	cGg/cAg																																													NEWRECORD																																		
RAC1	5879	MSKCC	GRCh37	7	6441974	6441974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	263	346	0	ENST00000356142.4:c.533C>T	p.Ala178Val	p.A178V	ENST00000356142	NM_018890.3	178	gCg/gTg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139399128	139399128	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372830543		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	280	420	0	ENST00000277541.6:c.5015G>A	p.Arg1672His	p.R1672H	ENST00000277541	NM_017617.3	1672	cGc/cAc																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139412350	139412350	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200562991		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	235	400	0	ENST00000277541.6:c.1295C>T	p.Thr432Met	p.T432M	ENST00000277541	NM_017617.3	432	aCg/aTg																																													NEWRECORD																																		
PAK1	5058	MSKCC	GRCh37	11	77066883	77066883	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	145	333	0	ENST00000356341.3:c.602A>G	p.Tyr201Cys	p.Y201C	ENST00000356341	NM_002576.4	201	tAc/tGc																																													NEWRECORD																																		
EED	8726	MSKCC	GRCh37	11	85956323	85956323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	148	316	0	ENST00000263360.6:c.52G>A	p.Ala18Thr	p.A18T	ENST00000263360	NM_003797.3	18	Gcc/Acc																																													NEWRECORD																																		
RAD52	5893	MSKCC	GRCh37	12	1025831	1025831	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	314	487	0	ENST00000358495.3:c.699A>G	p.Ile233Met	p.I233M	ENST00000358495	NM_134424.2	233	atA/atG																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49424724	49424724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	396	526	0	ENST00000301067.7:c.13623G>T	p.Lys4541Asn	p.K4541N	ENST00000301067	NM_003482.3	4541	aaG/aaT																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49431543	49431543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	254	453	0	ENST00000301067.7:c.9596G>A	p.Ser3199Asn	p.S3199N	ENST00000301067	NM_003482.3	3199	aGc/aAc																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49442932	49442932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	265	409	1	ENST00000301067.7:c.3976C>T	p.Arg1326Trp	p.R1326W	ENST00000301067	NM_003482.3	1326	Cgg/Tgg																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115112400	115112400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	182	311	0	ENST00000257566.3:c.1340G>A	p.Arg447His	p.R447H	ENST00000257566	NM_016569.3	447	cGc/cAc																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110435345	110435345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	188	237	0	ENST00000375856.3:c.3056C>T	p.Pro1019Leu	p.P1019L	ENST00000375856	NM_003749.2	1019	cCg/cTg																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42019539	42019539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1177	534	663	0	ENST00000219905.7:c.3592G>A	p.Val1198Met	p.V1198M	ENST00000219905	NM_001164273.1	1198	Gtg/Atg																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3779279	3779279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	212	418	2	ENST00000262367.5:c.5769C>A	p.Ser1923Arg	p.S1923R	ENST00000262367	NM_004380.2	1923	agC/agA																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3788618	3788618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	336	471	0	ENST00000262367.5:c.4336C>A	p.Arg1446Ser	p.R1446S	ENST00000262367	NM_004380.2	1446	Cgc/Agc																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72923711	72923711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1094	356	744	3	ENST00000268489.5:c.3367C>T	p.Arg1123Trp	p.R1123W	ENST00000268489	NM_006885.3	1123	Cgg/Tgg																																													NEWRECORD																																		
ALOX12B	242	MSKCC	GRCh37	17	7982776	7982776	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	79	523	0	ENST00000319144.4:c.1009T>C	p.Cys337Arg	p.C337R	ENST00000319144	NM_001139.2	337	Tgc/Cgc																																													NEWRECORD																																		
RARA	5914	MSKCC	GRCh37	17	38504636	38504636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	333	518	0	ENST00000254066.5:c.247C>T	p.Arg83Cys	p.R83C	ENST00000254066	NM_000964.3	83	Cgc/Tgc																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2220218	2220218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	51	426	2	ENST00000398665.3:c.2803G>A	p.Ala935Thr	p.A935T	ENST00000398665	NM_032482.2	935	Gca/Aca																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11170801	11170801	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	25	353	0	ENST00000344626.4:c.4849A>G	p.Ser1617Gly	p.S1617G	ENST00000344626	NM_003072.3	1617	Agc/Ggc																																													NEWRECORD																																		
ZRSR2	8233	MSKCC	GRCh37	X	15838419	15838419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	144	579	0	ENST00000307771.7:c.917G>A	p.Arg306Gln	p.R306Q	ENST00000307771	NM_005089.3	306	cGg/cAg																																													NEWRECORD																																		
EIF1AX	1964	MSKCC	GRCh37	X	20159746	20159746	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	39	511	0	ENST00000379607.5:c.13A>G	p.Lys5Glu	p.K5E	ENST00000379607	NM_001412.3	5	Aaa/Gaa																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44923001	44923001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1116	163	590	1	ENST00000377967.4:c.1862G>A	p.Arg621His	p.R621H	ENST00000377967	NM_021140.2	621	cGc/cAc																																													NEWRECORD																																		
PIK3R2	5296	MSKCC	GRCh37	19	18274086	18274088	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	272	454	0	ENST00000222254.8:c.1308_1310del	p.Glu436del	p.E436del	ENST00000222254	NM_005027.3	435	aAGGag/aag																																													NEWRECORD																																		
STAT5A	6776	MSKCC	GRCh37	17	40441983	40441984	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	565	838	0	ENST00000345506.4:c.228_229insT	p.Gly77TrpfsTer23	p.G77Wfs*23	ENST00000345506	NM_003152.3	76	-/T																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3817777	3817778	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1366	517	741	1	ENST00000262367.5:c.3193_3194delAG	p.Ser1065Ter	p.S1065*	ENST00000262367	NM_004380.2	1065	AGt/t																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65311293	65311293	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	346	480	0	ENST00000342505.4:c.2018del	p.Gly673ValfsTer30	p.G673Vfs*30	ENST00000342505	NM_002227.2	673	gGt/gt																																													NEWRECORD																																		
TGFBR1	7046	MSKCC	GRCh37	9	101867538	101867543	+	inframe_deletion	In_Frame_Del	DEL	GGCGGC	GGCGGC	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	12	26	0	ENST00000374994.4:c.73_78del	p.Ala25_Ala26del	p.A25_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCg/ctg																																													NEWRECORD																																		
TNFAIP3	7128	MSKCC	GRCh37	6	138198265	138198265	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	215	306	0	ENST00000237289.4:c.861del	p.Val288PhefsTer4	p.V288Ffs*4	ENST00000237289	NM_001270507.1	286	ttA/tt																																													NEWRECORD																																		
CRKL	1399	MSKCC	GRCh37	22	21288188	21288188	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1160	77	554	1	ENST00000354336.3:c.437delA	p.Lys146ArgfsTer5	p.K146Rfs*5	ENST00000354336	NM_005207.3	145	Aaa/aa																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41726645	41726645	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1222	289	547	1	ENST00000301178.4:c.195del	p.Glu66ArgfsTer32	p.E66Rfs*32	ENST00000301178	NM_021913.4	64	Ccc/cc																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28929495		P-0006402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	849	563	1	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55241678	55241678	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs397517085		P-0006402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1097	906	592	0	ENST00000275493.2:c.2126A>C	p.Glu709Ala	p.E709A	ENST00000275493	NM_005228.3	709	gAa/gCa																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110435219	110435219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	487	269	0	ENST00000375856.3:c.3182C>T	p.Ser1061Leu	p.S1061L	ENST00000375856	NM_003749.2	1061	tCg/tTg																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89857932	89857932	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201385829		P-0006402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	180	443	0	ENST00000389301.3:c.1238G>A	p.Arg413His	p.R413H	ENST00000389301	NM_000135.2	413	cGt/cAt																																													NEWRECORD																																		
ALOX12B	242	MSKCC	GRCh37	17	7984475	7984475	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1287	153	605	0	ENST00000319144.4:c.383T>C	p.Val128Ala	p.V128A	ENST00000319144	NM_001139.2	128	gTc/gCc																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70361146	70361146	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	324	564	1	ENST00000374080.3:c.6334C>T	p.Gln2112Ter	p.Q2112*	ENST00000374080		2112	Caa/Taa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7576926	7576927	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	C			P-0006402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	240	475	0	ENST00000269305.4:c.920-1dup	p.Ala307GlyfsTer30	p.A307Gfs*30	ENST00000269305	NM_001126112.2	307	gca/gGca																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577588	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGGTAC	GGTGGTAC	-			P-0006402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	172	485	0	ENST00000269305.4:c.686_693del	p.Cys229TyrfsTer8	p.C229Yfs*8	ENST00000269305	NM_001126112.2	229	tGTACCACC/t																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0006589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	40	519	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	58	342	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112163696	112163697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	49	441	0	ENST00000257430.4:c.1620dupA	p.Gln541ThrfsTer19	p.Q541Tfs*19	ENST00000257430	NM_000038.5	540	tta/ttAa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175541	112175541	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	39	398	0	ENST00000257430.4:c.4251del	p.Ile1418Ter	p.I1418*	ENST00000257430	NM_000038.5	1417	aTt/at																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89711927	89711928	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003052-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	72	416	1	ENST00000371953.3:c.548dup	p.Asn184GlufsTer6	p.N184Efs*6	ENST00000371953	NM_000314.4	182	tta/ttAa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003052-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	64	358	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0010080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	47	124	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	212	595	0	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																													NEWRECORD																																		
MALT1	10892	MSKCC	GRCh37	18	56409166	56409166	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201811923		P-0010080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1138	234	739	0	ENST00000348428.3:c.1673G>A	p.Arg558Lys	p.R558K	ENST00000348428	NM_006785.3	558	aGa/aAa																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89624267	89624270	+	frameshift_variant	Frame_Shift_Del	DEL	GGAG	GGAG	-			P-0010080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	59	220	0	ENST00000371953.3:c.41_44del	p.Arg14AsnfsTer9	p.R14Nfs*9	ENST00000371953	NM_000314.4	14	aGGAGa/aa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0011484-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	57	366	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175192	112175193	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0011484-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	21	158	0	ENST00000257430.4:c.3904dup	p.Leu1302ProfsTer13	p.L1302Pfs*13	ENST00000257430	NM_000038.5	1301	acc/aCcc																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212295684	212295684	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	113	480	0	ENST00000342788.4:c.2629G>T	p.Ala877Ser	p.A877S	ENST00000342788	NM_005235.2	877	Gct/Tct																																													NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35876425	35876425	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	68	437	0	ENST00000303115.3:c.1217T>G	p.Leu406Arg	p.L406R	ENST00000303115	NM_002185.3	406	cTt/cGt																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116340112	116340112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	122	396	0	ENST00000397752.3:c.974C>A	p.Pro325His	p.P325H	ENST00000397752	NM_000245.2	325	cCt/cAt																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118376011	118376011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	147	645	1	ENST00000534358.1:c.9404C>T	p.Thr3135Ile	p.T3135I	ENST00000534358	NM_005933.3	3135	aCc/aTc																																													NEWRECORD																																		
ETV6	2120	MSKCC	GRCh37	12	12037492	12037492	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	118	385	0	ENST00000396373.4:c.1123G>T	p.Gly375Ter	p.G375*	ENST00000396373	NM_001987.4	375	Gga/Tga																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	608	492	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28623545	28623545	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	84	426	1	ENST00000241453.7:c.1012C>A	p.Gln338Lys	p.Q338K	ENST00000241453	NM_004119.2	338	Caa/Aaa																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28979946	28979946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	158	608	2	ENST00000282397.4:c.1522C>T	p.Arg508Cys	p.R508C	ENST00000282397	NM_002019.4	508	Cgc/Tgc																																													NEWRECORD																																		
RAD51B	5890	MSKCC	GRCh37	14	68352598	68352598	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	197	534	0	ENST00000487270.1:c.465A>G	p.Ile155Met	p.I155M	ENST00000487270	NM_133509.3	155	atA/atG																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645955	67645955	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	67	484	0	ENST00000264010.4:c.883A>C	p.Lys295Gln	p.K295Q	ENST00000264010	NM_006565.3	295	Aag/Cag																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72993600	72993600	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	120	629	0	ENST00000268489.5:c.445C>T	p.Gln149Ter	p.Q149*	ENST00000268489	NM_006885.3	149	Cag/Tag																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9561237	9561237	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148001479		P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	96	507	0	ENST00000353224.5:c.545A>G	p.Tyr182Cys	p.Y182C	ENST00000353224	NM_177990.2	182	tAt/tGt																																													NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31376659	31376659	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	76	428	0	ENST00000328111.2:c.655-1G>T		p.X219_splice	ENST00000328111	NM_006892.3	219																																														NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162740174	162740174	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	305	555	1	ENST00000367921.3:c.1377del	p.Ser460HisfsTer28	p.S460Hfs*28	ENST00000367921	NM_006182.2	459	tCc/tc																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39937163	39937164	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	117	616	0	ENST00000378444.4:c.19dup	p.Leu7ProfsTer29	p.L7Pfs*29	ENST00000378444	NM_001123385.1	7	ctg/cCtg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	267	423	0	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42792017	42792017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	700	553	0	ENST00000575354.2:c.821G>A	p.Arg274Gln	p.R274Q	ENST00000575354	NM_015125.3	274	cGa/cAa																																													NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105243050	105243051	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCAGCGGATGATGAAGGTGTTGGGCCGGG			P-0007009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	462	560	0	ENST00000349310.3:c.203_232dup	p.Pro68_Cys77dup	p.P68_C77dup	ENST00000349310	NM_001014432.1	68	ctg/cCCCGGCCCAACACCTTCATCATCCGCTGCCtg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	209	479	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0006716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	219	355	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																													NEWRECORD																																		
TGFBR1	7046	MSKCC	GRCh37	9	101900209	101900209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	126	655	1	ENST00000374994.4:c.643C>T	p.Arg215Ter	p.R215*	ENST00000374994	NM_004612.2	215	Cga/Tga																																													NEWRECORD																																		
TGFBR1	7046	MSKCC	GRCh37	9	101891277	101891277	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	108	604	0	ENST00000374994.4:c.238C>T	p.Arg80Ter	p.R80*	ENST00000374994	NM_004612.2	80	Cga/Tga																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	459813	459813	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779410726		P-0006716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	289	553	0	ENST00000399788.2:c.1282C>T	p.Arg428Trp	p.R428W	ENST00000399788	NM_001042603.1	428	Cgg/Tgg																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48581173	48581173	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	266	464	1	ENST00000342988.3:c.477G>T	p.Lys159Asn	p.K159N	ENST00000342988	NM_005359.5	159	aaG/aaT																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579718	7579718	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	223	562	0	ENST00000269305.4:c.78delT	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	26	ctT/ct																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16202995	16202995	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200777699		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	37	339	0	ENST00000375759.3:c.703C>T	p.Arg235Trp	p.R235W	ENST00000375759	NM_015001.2	235	Cgg/Tgg																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16259043	16259043	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	37	405	2	ENST00000375759.3:c.6308G>T	p.Arg2103Met	p.R2103M	ENST00000375759	NM_015001.2	2103	aGg/aTg																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162746102	162746102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	80	454	0	ENST00000367921.3:c.2225G>A	p.Arg742Gln	p.R742Q	ENST00000367921	NM_006182.2	742	cGg/cAg																																													NEWRECORD																																		
REL	5966	MSKCC	GRCh37	2	61149071	61149071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	80	597	4	ENST00000295025.8:c.1261C>T	p.Arg421Cys	p.R421C	ENST00000295025	NM_002908.2	421	Cgc/Tgc																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225368428	225368428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	38	560	0	ENST00000264414.4:c.1318C>T	p.Leu440Phe	p.L440F	ENST00000264414	NM_003590.4	440	Ctt/Ttt																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47098909	47098909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	56	485	1	ENST00000409792.3:c.6365G>A	p.Arg2122Gln	p.R2122Q	ENST00000409792	NM_014159.6	2122	cGg/cAg																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52595840	52595840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	67	610	0	ENST00000394830.3:c.4075C>T	p.Arg1359Cys	p.R1359C	ENST00000394830	NM_018313.4	1359	Cgc/Tgc																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71021817	71021817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	54	403	0	ENST00000318789.4:c.1541G>A	p.Arg514His	p.R514H	ENST00000318789	NM_032682.5	514	cGt/cAt																																													NEWRECORD																																		
SHQ1	55164	MSKCC	GRCh37	3	72866457	72866457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	96	547	0	ENST00000325599.8:c.806G>A	p.Arg269His	p.R269H	ENST00000325599	NM_018130.2	269	cGt/cAt																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89259603	89259603	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	15	241	0	ENST00000336596.2:c.747A>C	p.Glu249Asp	p.E249D	ENST00000336596	NM_005233.5	249	gaA/gaC																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	79	445	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189612061	189612061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	44	378	0	ENST00000264731.3:c.1813C>T	p.Arg605Trp	p.R605W	ENST00000264731	NM_003722.4	605	Cgg/Tgg																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66356208	66356208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	21	470	0	ENST00000273854.3:c.1289A>G	p.Asp430Gly	p.D430G	ENST00000273854	NM_004439.5	430	gAt/gGt																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187517730	187517730	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	15	189	0	ENST00000441802.2:c.12964T>C	p.Ser4322Pro	p.S4322P	ENST00000441802	NM_005245.3	4322	Tcc/Ccc																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187628026	187628026	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750746155		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	81	573	0	ENST00000441802.2:c.2956G>A	p.Val986Ile	p.V986I	ENST00000441802	NM_005245.3	986	Gtc/Atc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	60	400	2	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	65	535	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	150004721	150004721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	47	480	1	ENST00000253339.5:c.1504C>T	p.Arg502Cys	p.R502C	ENST00000253339		502	Cgt/Tgt																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2946355	2946355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	35	521	0	ENST00000396946.4:c.3382G>A	p.Val1128Ile	p.V1128I	ENST00000396946	NM_032415.4	1128	Gta/Ata																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2962804	2962804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	18	401	2	ENST00000396946.4:c.2104G>A	p.Glu702Lys	p.E702K	ENST00000396946	NM_032415.4	702	Gag/Aag																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106508461	106508461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	11	130	0	ENST00000359195.3:c.455G>A	p.Arg152Gln	p.R152Q	ENST00000359195	NM_002649.2	152	cGg/cAg																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116339700	116339700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	36	395	1	ENST00000397752.3:c.562G>A	p.Val188Ile	p.V188I	ENST00000397752	NM_000245.2	188	Gta/Ata																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63852274	63852274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	57	318	0	ENST00000279873.7:c.3052G>A	p.Asp1018Asn	p.D1018N	ENST00000279873	NM_032199.2	1018	Gat/Aat																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70446278	70446278	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147119124		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	79	682	0	ENST00000373644.4:c.5218C>T	p.Arg1740Cys	p.R1740C	ENST00000373644	NM_030625.2	1740	Cgc/Tgc																																													NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64137761	64137761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	38	504	1	ENST00000334205.4:c.1862C>T	p.Ala621Val	p.A621V	ENST00000334205	NM_003942.2	621	gCg/gTg																																													NEWRECORD																																		
PAK1	5058	MSKCC	GRCh37	11	77103408	77103408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	51	702	0	ENST00000356341.3:c.158G>A	p.Arg53Gln	p.R53Q	ENST00000356341	NM_002576.4	53	cGa/cAa																																													NEWRECORD																																		
PGR	5241	MSKCC	GRCh37	11	100933406	100933406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150584881		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	93	726	1	ENST00000325455.5:c.1984G>A	p.Val662Ile	p.V662I	ENST00000325455	NM_001202474.3	662	Gtt/Att																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	96	451	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46205332	46205332	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	82	356	0	ENST00000334344.6:c.416C>T	p.Ser139Leu	p.S139L	ENST00000334344	NM_152641.2	139	tCg/tTg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49420745	49420745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	33	336	2	ENST00000301067.7:c.15004C>T	p.Arg5002Trp	p.R5002W	ENST00000301067	NM_003482.3	5002	Cgg/Tgg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49435048	49435048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	16	260	0	ENST00000301067.7:c.6505G>A	p.Ala2169Thr	p.A2169T	ENST00000301067	NM_003482.3	2169	Gcc/Acc																																													NEWRECORD																																		
NUP93	9688	MSKCC	GRCh37	16	56864528	56864528	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	93	874	0	ENST00000308159.5:c.1016A>G	p.Asn339Ser	p.N339S	ENST00000308159	NM_014669.4	339	aAt/aGt																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29509685	29509685	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	30	333	0	ENST00000358273.4:c.888+2T>C		p.X296_splice	ENST00000358273	NM_001042492.2	296																																														NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10250953	10250953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	31	316	0	ENST00000340748.4:c.3527C>T	p.Ala1176Val	p.A1176V	ENST00000340748		1176	gCg/gTg																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11098396	11098396	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138097741		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	38	385	0	ENST00000344626.4:c.914C>T	p.Pro305Leu	p.P305L	ENST00000344626	NM_003072.3	305	cCg/cTg																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11098423	11098423	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs549254467		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	25	272	0	ENST00000344626.4:c.941C>T	p.Ala314Val	p.A314V	ENST00000344626	NM_003072.3	314	gCg/gTg																																													NEWRECORD																																		
DNAJB1	3337	MSKCC	GRCh37	19	14626844	14626844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	121	829	1	ENST00000254322.2:c.931C>T	p.Arg311Cys	p.R311C	ENST00000254322	NM_006145.1	311	Cgt/Tgt																																													NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31395665	31395665	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	30	480	0	ENST00000328111.2:c.2518C>T	p.Arg840Ter	p.R840*	ENST00000328111	NM_006892.3	840	Cga/Tga																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44970645	44970645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	31	322	0	ENST00000377967.4:c.4195G>A	p.Ala1399Thr	p.A1399T	ENST00000377967	NM_021140.2	1399	Gcc/Acc																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	123	402	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																													NEWRECORD																																		
NCOA3	8202	MSKCC	GRCh37	20	46264985	46264985	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	72	904	0	ENST00000371998.3:c.1860del	p.Lys620AsnfsTer18	p.K620Nfs*18	ENST00000371998		619	Aaa/aa																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101401	27101402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	37	466	0	ENST00000324856.7:c.4689dup	p.Met1564HisfsTer8	p.M1564Hfs*8	ENST00000324856	NM_006015.4	1561	-/C																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112177716	112177717	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	43	325	0	ENST00000257430.4:c.6430_6431del	p.Leu2144GlyfsTer9	p.L2144Gfs*9	ENST00000257430	NM_000038.5	2142	aTC/a																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114903755	114903755	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	78	785	1	ENST00000543371.1:c.763del	p.His255IlefsTer3	p.H255Ifs*3	ENST00000543371	NM_001198531.1	253	atC/at																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762108866		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	57	609	4	ENST00000268489.5:c.10215dup	p.Gly3406ArgfsTer25	p.G3406Rfs*25	ENST00000268489	NM_006885.3	3405	-/C																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47702382	47702382	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	53	386	0	ENST00000233146.2:c.1978del	p.Asp660IlefsTer25	p.D660Ifs*25	ENST00000233146	NM_000251.2	660	Gat/at																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	39	470	2	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																														NEWRECORD																																		
IGF2	3481	MSKCC	GRCh37	11	2154251	2154251	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	39	534	0	ENST00000434045.2:c.677del	p.Gly226AlafsTer30	p.G226Afs*30	ENST00000434045	NM_001127598.1	226	gGc/gc																																													NEWRECORD																																		
CD274	29126	MSKCC	GRCh37	9	5466787	5466787	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	69	540	0	ENST00000381577.3:c.813del	p.Lys271AsnfsTer44	p.K271Nfs*44	ENST00000381577	NM_014143.3	270	Aaa/aa																																													NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215646084	215646085	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs746325928		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	55	435	0	ENST00000260947.4:c.513dup	p.Asp172ArgfsTer10	p.D172Rfs*10	ENST00000260947	NM_000465.2	171	-/A																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	71	712	6	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23646981	23646981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs587776408		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	50	531	2	ENST00000261584.4:c.886del	p.Met296Ter	p.M296*	ENST00000261584	NM_024675.3	296	Atg/tg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577105	7577106	+	inframe_insertion	In_Frame_Ins	INS	-	-	GACAGGCAC			P-0014255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	49	854	0	ENST00000269305.4:c.824_832dup	p.Cys277_Pro278insArgAlaCys	p.C277_P278insRAC	ENST00000269305	NM_001126112.2	278	cct/cGTGCCTGTCct																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11130372	11130372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	32	695	1	ENST00000344626.4:c.2611G>A	p.Ala871Thr	p.A871T	ENST00000344626	NM_003072.3	871	Gcc/Acc																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151884488	151884488	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	180	244	0	ENST00000262189.6:c.4867G>T	p.Glu1623Ter	p.E1623*	ENST00000262189	NM_170606.2	1623	Gaa/Taa																																													NEWRECORD																																		
GREM1	26585	MSKCC	GRCh37	15	33022962	33022962	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	104	382	0	ENST00000300177.4:c.71G>C	p.Gly24Ala	p.G24A	ENST00000300177	NM_001191322.1	24	gGg/gCg																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115939	8115940	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	49	168	0	ENST00000346208.3:c.1287dup	p.Phe430LeufsTer77	p.F430Lfs*77	ENST00000346208		429	tcc/tCcc																																													NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0012897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	335	412	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	342	707	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	250	405	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																													NEWRECORD																																		
MST1	4485	MSKCC	GRCh37	3	49724798	49724798	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G	rs138710044		P-0012897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	14	101	0	ENST00000449682.2:c.469A>C	p.Lys157Gln	p.K157Q	ENST00000449682	NM_020998.3	157	Aag/Cag																																													NEWRECORD																																		
PIK3R3	8503	MSKCC	GRCh37	1	46531765	46531765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	180	695	0	ENST00000262741.5:c.582G>T	p.Glu194Asp	p.E194D	ENST00000262741	NM_003629.3	194	gaG/gaT																																													NEWRECORD																																		
HIST1H3E	8353	MSKCC	GRCh37	6	26225561	26225561	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1360	951	1572	1	ENST00000360408.1:c.179A>T	p.Glu60Val	p.E60V	ENST00000360408	NM_003532.2	60	gAg/gTg																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10602484	10602485	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	358	423	0	ENST00000171111.5:c.1093dup	p.Leu365ProfsTer50	p.L365Pfs*50	ENST00000171111	NM_203500.1	365	ctg/cCtg																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0008949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	28	389	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0008949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	27	256	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																													NEWRECORD																																		
BAP1	8314	MSKCC	GRCh37	3	52443892	52443892	+	start_lost	Translation_Start_Site	SNP	C	C	A			P-0008949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	37	311	0	ENST00000460680.1:c.3G>T	p.Met1?	p.M1?	ENST00000460680	NM_004656.3	1	atG/atT																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	67	420	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	42	270	0	ENST00000324856.7:c.3977dupC	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771831816		P-0007607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	41	250	0	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																													NEWRECORD																																		
SMARCB1	6598	MSKCC	GRCh37	22	24143190	24143190	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1230	83	428	0	ENST00000263121.7:c.422A>G	p.His141Arg	p.H141R	ENST00000263121	NM_003073.3	141	cAc/cGc																																													NEWRECORD																																		
FUBP1	8880	MSKCC	GRCh37	1	78429978	78429978	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	82	483	3	ENST00000370768.2:c.901del	p.Ile301TyrfsTer22	p.I301Yfs*22	ENST00000370768	NM_003902.3	301	Ata/ta																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	108	667	4	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	102	463	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59760967	59760967	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	112	602	4	ENST00000259008.2:c.3440delA	p.Asn1147MetfsTer3	p.N1147Mfs*3	ENST00000259008	NM_032043.2	1147	aAt/at																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	54	437	0	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68856093	68856093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	108	512	0	ENST00000261769.5:c.1901C>T	p.Ala634Val	p.A634V	ENST00000261769	NM_004360.3	634	gCg/gTg																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	145	730	0	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																													NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	106	764	2	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106861	27106861	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	78	368	0	ENST00000324856.7:c.6472C>T	p.Arg2158Ter	p.R2158*	ENST00000324856	NM_006015.4	2158	Cga/Tga																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	94120326	94120326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	116	693	0	ENST00000369303.4:c.725C>T	p.Ala242Val	p.A242V	ENST00000369303	NM_004440.3	242	gCg/gTg																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003784	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	65	456	0	ENST00000558401.1:c.41_44delCTCT	p.Ser14PhefsTer29	p.S14Ffs*29	ENST00000558401	NM_004048.2	13	CTCTct/ct																																													NEWRECORD																																		
SOX2	6657	MSKCC	GRCh37	3	181430202	181430202	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	20	144	0	ENST00000325404.1:c.59del	p.Gly20AlafsTer26	p.G20Afs*26	ENST00000325404	NM_003106.3	18	tcG/tc																																													NEWRECORD																																		
TNFRSF14	8764	MSKCC	GRCh37	1	2494309	2494309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	67	495	0	ENST00000355716.4:c.700G>A	p.Val234Ile	p.V234I	ENST00000355716	NM_003820.2	234	Gta/Ata																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65321324	65321324	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	90	475	1	ENST00000342505.4:c.1516C>A	p.Arg506Ser	p.R506S	ENST00000342505	NM_002227.2	506	Cgc/Agc																																													NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115256439	115256439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	86	509	4	ENST00000369535.4:c.272C>T	p.Ala91Val	p.A91V	ENST00000369535	NM_002524.4	91	gCg/gTg																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48026033	48026033	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	74	527	0	ENST00000234420.5:c.911T>C	p.Val304Ala	p.V304A	ENST00000234420	NM_000179.2	304	gTg/gCg																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198265030	198265030	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	91	439	0	ENST00000335508.6:c.2847A>T	p.Gln949His	p.Q949H	ENST00000335508	NM_012433.2	949	caA/caT																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178947116	178947116	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	85	457	0	ENST00000263967.3:c.2552T>C	p.Val851Ala	p.V851A	ENST00000263967	NM_006218.2	851	gTg/gCg																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56161175	56161175	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	97	470	0	ENST00000399503.3:c.1044C>A	p.Ser348Arg	p.S348R	ENST00000399503	NM_005921.1	348	agC/agA																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157522260	157522260	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	82	473	0	ENST00000346085.5:c.4532A>G	p.Gln1511Arg	p.Q1511R	ENST00000346085	NM_020732.3	1511	cAg/cGg																																													NEWRECORD																																		
FGF3	2248	MSKCC	GRCh37	11	69625348	69625348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	126	555	0	ENST00000334134.2:c.445G>A	p.Ala149Thr	p.A149T	ENST00000334134	NM_005247.2	149	Gcc/Acc																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118391600	118391600	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	57	269	0	ENST00000534358.1:c.11513G>T	p.Arg3838Met	p.R3838M	ENST00000534358	NM_005933.3	3838	aGg/aTg																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	416834	416834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	108	536	0	ENST00000399788.2:c.3716G>A	p.Arg1239Gln	p.R1239Q	ENST00000399788	NM_001042603.1	1239	cGg/cAg																																													NEWRECORD																																		
RAB35	11021	MSKCC	GRCh37	12	120541651	120541651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	143	700	0	ENST00000229340.5:c.206G>A	p.Arg69His	p.R69H	ENST00000229340	NM_006861.6	69	cGc/cAc																																													NEWRECORD																																		
NKX2-1	7080	MSKCC	GRCh37	14	36986509	36986509	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	65	535	0	ENST00000354822.5:c.1180A>G	p.Thr394Ala	p.T394A	ENST00000354822	NM_001079668.2	394	Acc/Gcc																																													NEWRECORD																																		
MAPK3	5595	MSKCC	GRCh37	16	30129432	30129432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	120	654	0	ENST00000263025.4:c.596G>A	p.Gly199Asp	p.G199D	ENST00000263025	NM_002746.2	199	gGc/gAc																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72991889	72991889	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	116	764	0	ENST00000268489.5:c.2156A>G	p.Tyr719Cys	p.Y719C	ENST00000268489	NM_006885.3	719	tAc/tGc																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16052769	16052769	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	87	619	0	ENST00000268712.3:c.905A>G	p.Gln302Arg	p.Q302R	ENST00000268712	NM_006311.3	302	cAa/cGa																																													NEWRECORD																																		
RARA	5914	MSKCC	GRCh37	17	38508652	38508652	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	110	601	0	ENST00000254066.5:c.700A>G	p.Lys234Glu	p.K234E	ENST00000254066	NM_000964.3	234	Aag/Gag																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63533131	63533131	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	84	493	4	ENST00000307078.5:c.1763C>A	p.Pro588Gln	p.P588Q	ENST00000307078	NM_004655.3	588	cCg/cAg																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5212403	5212403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	94	541	3	ENST00000357368.4:c.4714C>T	p.Arg1572Trp	p.R1572W	ENST00000357368	NM_002850.3	1572	Cgg/Tgg																																													NEWRECORD																																		
NKX2-1	7080	MSKCC	GRCh37	14	36988409	36988409	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	13	112	0	ENST00000354822.5:c.244del	p.Ala82ProfsTer19	p.A82Pfs*19	ENST00000354822	NM_001079668.2	82	Gcc/cc																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	30143052	30143052	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	97	538	0	ENST00000389048.3:c.474del	p.Glu160ArgfsTer26	p.E160Rfs*26	ENST00000389048	NM_004304.4	158	ccC/cc																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176673759	176673759	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	127	438	1	ENST00000439151.2:c.4463del	p.Asn1488MetfsTer15	p.N1488Mfs*15	ENST00000439151	NM_022455.4	1487	Aaa/aa																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39933013	39933013	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	110	281	0	ENST00000378444.4:c.1586del	p.Asn529ThrfsTer60	p.N529Tfs*60	ENST00000378444	NM_001123385.1	529	aAc/ac																																													NEWRECORD																																		
GPS2	2874	MSKCC	GRCh37	17	7217705	7217707	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs757139280		P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1003	161	690	0	ENST00000380728.2:c.220_222del	p.Glu74del	p.E74del	ENST00000380728		74	GAG/-																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70360589	70360594	+	inframe_deletion	In_Frame_Del	DEL	AGCAGC	AGCAGC	-			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	44	234	0	ENST00000374080.3:c.6162_6167del	p.Gln2075_Gln2076del	p.Q2075_Q2076del	ENST00000374080		2050	gAGCAGCag/gag																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153271233	153271234	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	86	495	0	ENST00000281708.4:c.544dup	p.Ser182PhefsTer74	p.S182Ffs*74	ENST00000281708	NM_033632.3	182	tct/tTct																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	8	209	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	96	405	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023008	27023010	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0010428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	10	26	0	ENST00000324856.7:c.126_128delGGC	p.Ala45del	p.A45del	ENST00000324856	NM_006015.4	38	gaGGCg/gag																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0010428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1742	306	977	0	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587777894		P-0010428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	186	609	1	ENST00000361445.4:c.6644C>A	p.Ser2215Tyr	p.S2215Y	ENST00000361445	NM_004958.3	2215	tCt/tAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175650	112175651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	142	436	0	ENST00000257430.4:c.4364dup	p.Asn1455LysfsTer2	p.N1455Kfs*2	ENST00000257430	NM_000038.5	1453	-/A																																													NEWRECORD																																		
MAP2K2	5605	MSKCC	GRCh37	19	4117549	4117549	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012122-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	30	396	2	ENST00000262948.5:c.171T>A	p.Phe57Leu	p.F57L	ENST00000262948	NM_030662.3	57	ttT/ttA																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111449	8111450	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012122-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	55	621	0	ENST00000346208.3:c.936dup	p.Ala313SerfsTer39	p.A313Sfs*39	ENST00000346208		312	aga/agAa																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	184	402	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
TSHR	7253	MSKCC	GRCh37	14	81610048	81610048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	57	369	0	ENST00000298171.2:c.1646G>A	p.Cys549Tyr	p.C549Y	ENST00000298171	NM_000369.2	549	tGc/tAc																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151873825	151873826	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	74	454	0	ENST00000262189.6:c.8712dup	p.Val2905CysfsTer20	p.V2905Cfs*20	ENST00000262189	NM_170606.2	2904	-/T																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0011138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	636	434	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0011138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	130	284	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156843550	156843550	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	146	402	0	ENST00000524377.1:c.976A>T	p.Ser326Cys	p.S326C	ENST00000524377	NM_002529.3	326	Agc/Tgc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8100553	8100553	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	111	353	0	ENST00000346208.3:c.527C>G	p.Ala176Gly	p.A176G	ENST00000346208		176	gCc/gGc																																													NEWRECORD																																		
WT1	7490	MSKCC	GRCh37	11	32439164	32439164	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	130	290	0	ENST00000332351.3:c.909C>A	p.Cys303Ter	p.C303*	ENST00000332351	NM_024426.4	303	tgC/tgA																																													NEWRECORD																																		
PTPN11	5781	MSKCC	GRCh37	12	112926878	112926878	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	107	320	0	ENST00000351677.2:c.1498C>G	p.Gln500Glu	p.Q500E	ENST00000351677	NM_002834.3	500	Cag/Gag																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	358	408	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																													NEWRECORD																																		
PIK3CD	5293	MSKCC	GRCh37	1	9775720	9775720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	150	350	0	ENST00000377346.4:c.263G>A	p.Arg88His	p.R88H	ENST00000377346	NM_005026.3	88	cGt/cAt																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108181012	108181012	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	178	331	0	ENST00000278616.4:c.5888A>G	p.Asp1963Gly	p.D1963G	ENST00000278616	NM_000051.3	1963	gAt/gGt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0007996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	100	342	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175349	112175353	+	frameshift_variant	Frame_Shift_Del	DEL	AATTT	AATTT	-			P-0007996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	19	266	0	ENST00000257430.4:c.4058_4062del	p.Glu1353ValfsTer20	p.E1353Vfs*20	ENST00000257430	NM_000038.5	1353	gAATTT/g																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70120003	70120003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			12	19	50	0	ENST00000245479.2:c.1005G>A	p.Trp335Ter	p.W335*	ENST00000245479	NM_000346.3	335	tgG/tgA																																													NEWRECORD																																		
AURKA	6790	MSKCC	GRCh37	20	54945263	54945263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	13	300	0	ENST00000312783.6:c.1163C>T	p.Ser388Leu	p.S388L	ENST00000312783	NM_198436.1	388	tCa/tTa																																													NEWRECORD																																		
CDKN1B	1027	MSKCC	GRCh37	12	12871157	12871158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	34	137	0	ENST00000228872.4:c.385dup	p.His129ProfsTer8	p.H129Pfs*8	ENST00000228872	NM_004064.3	128	-/C																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0004328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	216	448	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0004328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	60	572	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0004328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	228	415	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120510775	120510775	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	121	497	0	ENST00000256646.2:c.1189G>T	p.Gly397Trp	p.G397W	ENST00000256646	NM_024408.3	397	Ggg/Tgg																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68842620	68842620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	82	524	0	ENST00000261769.5:c.556G>A	p.Gly186Ser	p.G186S	ENST00000261769	NM_004360.3	186	Ggc/Agc																																													NEWRECORD																																		
RAD51B	5890	MSKCC	GRCh37	14	68331685	68331752	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGATTACAGGTCCACCAGGTTGTGGAAAAACTCAG	TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGATTACAGGTCCACCAGGTTGTGGAAAAACTCAG	-			P-0004328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	35	88	0	ENST00000487270.1:c.316-31_352del		p.X106_splice	ENST00000487270	NM_133509.3	106																																														NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974806	21974807	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	13	165	0	ENST00000304494.5:c.20dup	p.Ser7ArgfsTer8	p.S7Rfs*8	ENST00000304494	NM_000077.4	7	agc/agGc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0006374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	71	417	4	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151859704	151859704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	50	441	1	ENST00000262189.6:c.10958C>T	p.Pro3653Leu	p.P3653L	ENST00000262189	NM_170606.2	3653	cCt/cTt																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971122	21971123	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	34	297	0	ENST00000304494.5:c.235dup	p.Thr79AsnfsTer41	p.T79Nfs*41	ENST00000304494	NM_000077.4	79	acc/aAcc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25380276	25380277	+	missense_variant	Missense_Mutation	DNP	TG	TG	GC			P-0006374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	52	428	0	ENST00000256078.4:c.181_182delinsGC	p.Gln61Ala	p.Q61A	ENST00000256078	NM_033360.2	61	CAa/GCa																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	80	255	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	93	504	5	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																													NEWRECORD																																		
MEF2B	100271849	MSKCC	GRCh37	19	19256768	19256769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1202792889		P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	45	335	0	ENST00000162023.5:c.944dup	p.Val316SerfsTer6	p.V316Sfs*6	ENST00000162023		315	cca/ccCa																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27088787	27088788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	203	591	0	ENST00000324856.7:c.2402dupG	p.Gln802SerfsTer15	p.Q802Sfs*15	ENST00000324856	NM_006015.4	799	cag/caGg																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180057230	180057230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	61	534	1	ENST00000261937.6:c.508C>T	p.Arg170Cys	p.R170C	ENST00000261937	NM_182925.4	170	Cgc/Tgc																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1109	184	982	2	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39934126	39934127	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	188	489	0	ENST00000378444.4:c.472dup	p.Ser158LysfsTer28	p.S158Kfs*28	ENST00000378444	NM_001123385.1	158	agt/aAgt																																													NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	307	1564	16	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10291083	10291084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755889652		P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	68	637	2	ENST00000340748.4:c.387dup	p.Lys130GlnfsTer19	p.K130Qfs*19	ENST00000340748		129	-/C																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49420661	49420661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	80	371	0	ENST00000301067.7:c.15088C>T	p.Arg5030Cys	p.R5030C	ENST00000301067	NM_003482.3	5030	Cgt/Tgt																																													NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58740623	58740624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs763475304		P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1331	262	1334	0	ENST00000305921.3:c.1535dup	p.Asn512LysfsTer16	p.N512Kfs*16	ENST00000305921	NM_003620.3	510	caa/cAaa																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	183	645	1	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																													NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90958479	90958480	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	98	356	0	ENST00000265433.3:c.1958dup	p.Leu654AlafsTer5	p.L654Afs*5	ENST00000265433	NM_002485.4	653	aag/aaAg																																													NEWRECORD																																		
RARA	5914	MSKCC	GRCh37	17	38512401	38512402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs745553450		P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	53	514	1	ENST00000254066.5:c.1319dup	p.Pro441AlafsTer5	p.P441Afs*5	ENST00000254066	NM_000964.3	438	gcc/gCcc																																													NEWRECORD																																		
IGF2	3481	MSKCC	GRCh37	11	2154241	2154242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	60	819	3	ENST00000434045.2:c.686dup	p.Glu230ArgfsTer50	p.E230Rfs*50	ENST00000434045	NM_001127598.1	229	cca/ccCa																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139390735	139390736	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	75	926	0	ENST00000277541.6:c.7455dupC	p.Ser2486LeufsTer21	p.S2486Lfs*21	ENST00000277541	NM_017617.3	2485	-/C																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25368433	25368434	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	165	559	0	ENST00000256078.4:c.511dup	p.Ile171AsnfsTer14	p.I171Nfs*14	ENST00000256078	NM_033360.2	171	atc/aAtc																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29550472	29550473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	76	359	1	ENST00000358273.4:c.1738dup	p.Tyr580LeufsTer8	p.Y580Lfs*8	ENST00000358273	NM_001042492.2	578	ctt/cTtt																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11288919	11288919	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	71	518	0	ENST00000361445.4:c.2836T>C	p.Phe946Leu	p.F946L	ENST00000361445	NM_004958.3	946	Ttc/Ctc																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16255967	16255967	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	81	326	0	ENST00000375759.3:c.3232T>C	p.Ser1078Pro	p.S1078P	ENST00000375759	NM_015001.2	1078	Tca/Cca																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65303624	65303624	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	129	566	1	ENST00000342505.4:c.3131C>A	p.Pro1044His	p.P1044H	ENST00000342505	NM_002227.2	1044	cCt/cAt																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156849113	156849113	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	129	885	0	ENST00000524377.1:c.2005T>G	p.Phe669Val	p.F669V	ENST00000524377	NM_002529.3	669	Ttt/Gtt																																													NEWRECORD																																		
IKBKE	9641	MSKCC	GRCh37	1	206653255	206653255	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	92	568	0	ENST00000367120.3:c.1226A>G	p.Gln409Arg	p.Q409R	ENST00000367120	NM_014002.3	409	cAg/cGg																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29446388	29446388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	188	1207	1	ENST00000389048.3:c.3179G>A	p.Arg1060His	p.R1060H	ENST00000389048	NM_004304.4	1060	cGc/cAc																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47641544	47641544	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	108	534	0	ENST00000233146.2:c.929T>A	p.Leu310His	p.L310H	ENST00000233146	NM_000251.2	310	cTt/cAt																																													NEWRECORD																																		
REL	5966	MSKCC	GRCh37	2	61118836	61118836	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	106	410	0	ENST00000295025.8:c.29T>C	p.Ile10Thr	p.I10T	ENST00000295025	NM_002908.2	10	aTa/aCa																																													NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215593573	215593573	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140729292		P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	105	440	3	ENST00000260947.4:c.2161G>A	p.Ala721Thr	p.A721T	ENST00000260947	NM_000465.2	721	Gca/Aca																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47125634	47125634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	213	806	0	ENST00000409792.3:c.5636G>A	p.Arg1879His	p.R1879H	ENST00000409792	NM_014159.6	1879	cGc/cAc																																													NEWRECORD																																		
RHOA	387	MSKCC	GRCh37	3	49405903	49405903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	247	1056	1	ENST00000418115.1:c.235G>A	p.Val79Ile	p.V79I	ENST00000418115	NM_001664.2	79	Gtt/Att																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106157633	106157633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	163	593	1	ENST00000380013.4:c.2534A>G	p.Lys845Arg	p.K845R	ENST00000380013	NM_001127208.2	845	aAa/aGa																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106190818	106190818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	161	510	0	ENST00000380013.4:c.4096C>T	p.Arg1366Cys	p.R1366C	ENST00000380013	NM_001127208.2	1366	Cgt/Tgt																																													NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35876197	35876197	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	91	504	0	ENST00000303115.3:c.989A>G	p.Gln330Arg	p.Q330R	ENST00000303115	NM_002185.3	330	cAg/cGg																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38950228	38950228	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	102	465	0	ENST00000357387.3:c.3722T>C	p.Val1241Ala	p.V1241A	ENST00000357387	NM_152756.3	1241	gTa/gCa																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56160640	56160640	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	160	593	0	ENST00000399503.3:c.914A>G	p.Asn305Ser	p.N305S	ENST00000399503	NM_005921.1	305	aAc/aGc																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56178259	56178259	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	156	636	0	ENST00000399503.3:c.3232A>G	p.Lys1078Glu	p.K1078E	ENST00000399503	NM_005921.1	1078	Aaa/Gaa																																													NEWRECORD																																		
PLK2	10769	MSKCC	GRCh37	5	57750772	57750772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	162	561	0	ENST00000274289.3:c.1832C>T	p.Ala611Val	p.A611V	ENST00000274289	NM_006622.3	611	gCc/gTc																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86670022	86670022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	64	441	0	ENST00000274376.6:c.1819C>T	p.Pro607Ser	p.P607S	ENST00000274376	NM_002890.2	607	Cca/Tca																																													NEWRECORD																																		
HLA-A	3105	MSKCC	GRCh37	6	29911288	29911288	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	48	142	0	ENST00000376809.5:c.587T>C	p.Leu196Pro	p.L196P	ENST00000376809	NM_002116.7	196	cTg/cCg																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	93964384	93964384	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	192	966	0	ENST00000369303.4:c.2513G>A	p.Trp838Ter	p.W838*	ENST00000369303	NM_004440.3	838	tGg/tAg																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	149997811	149997811	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	153	512	1	ENST00000253339.5:c.2656C>T	p.Arg886Ter	p.R886*	ENST00000253339		886	Cga/Tga																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	150005146	150005146	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	152	531	0	ENST00000253339.5:c.1079A>G	p.Gln360Arg	p.Q360R	ENST00000253339		360	cAa/cGa																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157527410	157527410	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	124	531	0	ENST00000346085.5:c.5135A>G	p.Asp1712Gly	p.D1712G	ENST00000346085	NM_020732.3	1712	gAt/gGt																																													NEWRECORD																																		
ETV1	2115	MSKCC	GRCh37	7	13971178	13971178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	135	553	0	ENST00000405192.2:c.751C>T	p.Pro251Ser	p.P251S	ENST00000405192	NM_001163147.1	251	Ccc/Tcc																																													NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50467672	50467672	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	84	545	0	ENST00000331340.3:c.907A>G	p.Asn303Asp	p.N303D	ENST00000331340	NM_006060.4	303	Aac/Gac																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55231515	55231515	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	72	359	0	ENST00000275493.2:c.1721G>A	p.Arg574Gln	p.R574Q	ENST00000275493	NM_005228.3	574	cGg/cAg																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128850344	128850344	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	69	537	0	ENST00000249373.3:c.1607T>C	p.Val536Ala	p.V536A	ENST00000249373	NM_005631.4	536	gTc/gCc																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151860649	151860649	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs201260588		P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	371	912	0	ENST00000262189.6:c.10013A>G	p.Asn3338Ser	p.N3338S	ENST00000262189	NM_170606.2	3338	aAc/aGc																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151891344	151891344	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	182	403	0	ENST00000262189.6:c.4510G>A	p.Ala1504Thr	p.A1504T	ENST00000262189	NM_170606.2	1504	Gca/Aca																																													NEWRECORD																																		
NKX3-1	4824	MSKCC	GRCh37	8	23540302	23540302	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	45	302	2	ENST00000380871.4:c.101T>C	p.Ile34Thr	p.I34T	ENST00000380871	NM_006167.3	34	aTc/aCc																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98209267	98209267	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	131	810	0	ENST00000331920.6:c.4271A>G	p.Asp1424Gly	p.D1424G	ENST00000331920	NM_000264.3	1424	gAt/gGt																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63816974	63816974	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	85	364	0	ENST00000279873.7:c.945A>T	p.Glu315Asp	p.E315D	ENST00000279873	NM_032199.2	315	gaA/gaT																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70446138	70446138	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	105	487	0	ENST00000373644.4:c.5078A>G	p.Asn1693Ser	p.N1693S	ENST00000373644	NM_030625.2	1693	aAc/aGc																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108188231	108188231	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	77	423	1	ENST00000278616.4:c.6330C>A	p.Asp2110Glu	p.D2110E	ENST00000278616	NM_000051.3	2110	gaC/gaA																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18544183	18544183	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	116	531	0	ENST00000266497.5:c.2000T>C	p.Leu667Pro	p.L667P	ENST00000266497		667	cTa/cCa																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18699294	18699294	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	159	534	0	ENST00000266497.5:c.3395A>G	p.Gln1132Arg	p.Q1132R	ENST00000266497		1132	cAa/cGa																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49427440	49427440	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	104	687	0	ENST00000301067.7:c.11048A>C	p.Gln3683Pro	p.Q3683P	ENST00000301067	NM_003482.3	3683	cAg/cCg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49447056	49447056	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	95	698	0	ENST00000301067.7:c.888A>C	p.Lys296Asn	p.K296N	ENST00000301067	NM_003482.3	296	aaA/aaC																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32914669	32914669	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1588	219	1557	2	ENST00000380152.3:c.6177T>A	p.Ser2059Arg	p.S2059R	ENST00000380152		2059	agT/agA																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99454633	99454633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	185	695	0	ENST00000268035.6:c.1552A>G	p.Arg518Gly	p.R518G	ENST00000268035	NM_000875.3	518	Agg/Ggg																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15961036	15961036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	113	346	0	ENST00000268712.3:c.6184G>T	p.Asp2062Tyr	p.D2062Y	ENST00000268712	NM_006311.3	2062	Gat/Tat																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15967498	15967498	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	157	623	0	ENST00000268712.3:c.5105A>G	p.His1702Arg	p.H1702R	ENST00000268712	NM_006311.3	1702	cAc/cGc																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63545668	63545668	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	53	685	0	ENST00000307078.5:c.926A>G	p.Asp309Gly	p.D309G	ENST00000307078	NM_004655.3	309	gAt/gGt																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78914296	78914296	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	54	470	0	ENST00000306801.3:c.2920A>C	p.Ile974Leu	p.I974L	ENST00000306801	NM_020761.2	974	Atc/Ctc																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48575132	48575132	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	126	491	0	ENST00000342988.3:c.326T>C	p.Leu109Pro	p.L109P	ENST00000342988	NM_005359.5	109	cTa/cCa																																													NEWRECORD																																		
MALT1	10892	MSKCC	GRCh37	18	56390403	56390403	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1400	314	1342	1	ENST00000348428.3:c.1142T>C	p.Val381Ala	p.V381A	ENST00000348428	NM_006785.3	381	gTt/gCt																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50910276	50910276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	203	1391	0	ENST00000440232.2:c.1531T>C	p.Tyr511His	p.Y511H	ENST00000440232	NM_002691.3	511	Tac/Cac																																													NEWRECORD																																		
ERG	2078	MSKCC	GRCh37	21	39755579	39755579	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779273424		P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	125	643	5	ENST00000288319.7:c.1186G>A	p.Ala396Thr	p.A396T	ENST00000288319	NM_182918.3	396	Gcc/Acc																																													NEWRECORD																																		
ICOSLG	23308	MSKCC	GRCh37	21	45656846	45656846	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	38	472	0	ENST00000407780.3:c.310A>G	p.Thr104Ala	p.T104A	ENST00000407780	NM_001283052.1	104	Acc/Gcc																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41573882	41573882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	140	677	1	ENST00000263253.7:c.6167G>A	p.Arg2056Gln	p.R2056Q	ENST00000263253	NM_001429.3	2056	cGg/cAg																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39923844	39923844	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	52	507	0	ENST00000378444.4:c.3247A>G	p.Ser1083Gly	p.S1083G	ENST00000378444	NM_001123385.1	1083	Agt/Ggt																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70349909	70349909	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	199	474	0	ENST00000374080.3:c.3892A>G	p.Lys1298Glu	p.K1298E	ENST00000374080		1298	Aag/Gag																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42791228	42791229	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	72	403	0	ENST00000575354.2:c.293dup	p.Gly99TrpfsTer6	p.G99Wfs*6	ENST00000575354	NM_015125.3	96	-/C																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81392144	81392145	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	151	695	0	ENST00000222390.5:c.132dup	p.Ser45IlefsTer28	p.S45Ifs*28	ENST00000222390	NM_000601.4	44	-/A																																													NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35874636	35874637	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	108	626	0	ENST00000303115.3:c.799dup	p.Arg267LysfsTer3	p.R267Kfs*3	ENST00000303115	NM_002185.3	264	-/A																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3786070	3786071	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	198	974	0	ENST00000262367.5:c.4694dup	p.Glu1566GlyfsTer8	p.E1566Gfs*8	ENST00000262367	NM_004380.2	1565	aag/aaAg																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42791472	42791473	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	171	830	0	ENST00000575354.2:c.455dup	p.Leu153ProfsTer7	p.L153Pfs*7	ENST00000575354	NM_015125.3	151	-/T																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38060911	38060912	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	83	495	1	ENST00000250448.2:c.1077dup	p.Ile360HisfsTer55	p.I360Hfs*55	ENST00000250448	NM_004496.3	359	-/C																																													NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31384650	31384651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756395138		P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	146	949	4	ENST00000328111.2:c.1359dup	p.Leu454AlafsTer11	p.L454Afs*11	ENST00000328111	NM_006892.3	451	gag/gaGg																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	44	355	0	ENST00000407977.2:c.1975_1976dup	p.Pro660ValfsTer41	p.P660Vfs*41	ENST00000407977		659	ggt/ggGGt																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106156651	106156652	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	150	555	0	ENST00000380013.4:c.1557dupT	p.Gly520TrpfsTer2	p.G520Wfs*2	ENST00000380013	NM_001127208.2	518	att/aTtt																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118360575	118360576	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	204	799	0	ENST00000534358.1:c.4551dup	p.Pro1518ThrfsTer17	p.P1518Tfs*17	ENST00000534358	NM_005933.3	1516	-/A																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37686900	37686901	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	142	719	0	ENST00000447079.4:c.3810dup	p.Gly1271ArgfsTer13	p.G1271Rfs*13	ENST00000447079	NM_015083.1	1268	-/C																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15288788	15288789	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	47	209	0	ENST00000263388.2:c.3950dup	p.Gly1318ArgfsTer245	p.G1318Rfs*245	ENST00000263388	NM_000435.2	1317	cca/ccCa																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38946580	38946581	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	93	328	0	ENST00000357387.3:c.4388dup	p.His1463GlnfsTer2	p.H1463Qfs*2	ENST00000357387	NM_152756.3	1463	cat/caAt																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135798768	135798769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	75	390	0	ENST00000298552.3:c.474dup	p.Gly159TrpfsTer59	p.G159Wfs*59	ENST00000298552	NM_001162426.1	158	-/T																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8331622	8331623	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1119	70	982	0	ENST00000356435.5:c.5493dup	p.Glu1832ArgfsTer36	p.E1832Rfs*36	ENST00000356435		1831	-/A																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47161950	47161951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	110	455	0	ENST00000409792.3:c.4175dup	p.Asn1392LysfsTer6	p.N1392Kfs*6	ENST00000409792	NM_014159.6	1392	aac/aaAc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	278	391	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189584501	189584501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1063	163	453	1	ENST00000264731.3:c.797G>A	p.Arg266Gln	p.R266Q	ENST00000264731	NM_003722.4	266	cGa/cAa																																													NEWRECORD																																		
IRF4	3662	MSKCC	GRCh37	6	397178	397178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1269	173	624	2	ENST00000380956.4:c.563C>T	p.Pro188Leu	p.P188L	ENST00000380956	NM_001195286.1	188	cCg/cTg																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116380014	116380014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1185	204	617	0	ENST00000397752.3:c.1403C>A	p.Ser468Tyr	p.S468Y	ENST00000397752	NM_000245.2	468	tCt/tAt																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128850223	128850223	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	189	539	0	ENST00000249373.3:c.1486A>G	p.Ile496Val	p.I496V	ENST00000249373	NM_005631.4	496	Atc/Gtc																																													NEWRECORD																																		
FGFR2	2263	MSKCC	GRCh37	10	123263362	123263362	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1074	181	581	0	ENST00000358487.5:c.1381G>T	p.Ala461Ser	p.A461S	ENST00000358487	NM_000141.4	461	Gca/Tca																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46245595	46245595	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	283	430	1	ENST00000334344.6:c.3689G>T	p.Cys1230Phe	p.C1230F	ENST00000334344	NM_152641.2	1230	tGt/tTt																																													NEWRECORD																																		
NKX2-1	7080	MSKCC	GRCh37	14	36988571	36988571	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1264	223	803	0	ENST00000354822.5:c.82C>A	p.Arg28Ser	p.R28S	ENST00000354822	NM_001079668.2	28	Cgc/Agc																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2202712	2202712	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1194	275	772	1	ENST00000398665.3:c.721A>T	p.Asn241Tyr	p.N241Y	ENST00000398665	NM_032482.2	241	Aat/Tat																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5208009	5208009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	249	740	1	ENST00000357368.4:c.5702G>A	p.Arg1901Gln	p.R1901Q	ENST00000357368	NM_002850.3	1901	cGg/cAg																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10600510	10600510	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	149	399	0	ENST00000171111.5:c.1345G>T	p.Glu449Ter	p.E449*	ENST00000171111	NM_203500.1	449	Gag/Tag																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11137023	11137023	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0011132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	184	559	1	ENST00000344626.4:c.3215+1G>A		p.X1072_splice	ENST00000344626	NM_003072.3	1072																																														NEWRECORD																																		
CCNE1	898	MSKCC	GRCh37	19	30311673	30311673	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1324	239	628	0	ENST00000262643.3:c.527A>G	p.Tyr176Cys	p.Y176C	ENST00000262643	NM_001238.2	176	tAt/tGt																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40735454	40735455	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0011132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1208	199	691	0	ENST00000373198.4:c.3418dup	p.Ala1140GlyfsTer35	p.A1140Gfs*35	ENST00000373198	NM_133170.3	1140	gcc/gGcc																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1221318	1221321	+	frameshift_variant	Frame_Shift_Del	DEL	CCGC	CCGC	GG			P-0011132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	214	594	0	ENST00000326873.7:c.841_844delinsGG	p.Pro281GlyfsTer3	p.P281Gfs*3	ENST00000326873	NM_000455.4	281	CCGCtc/GGtc																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45008529	45008529	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	99	708	0	ENST00000558401.1:c.349C>T	p.Arg117Ter	p.R117*	ENST00000558401	NM_004048.2	117	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	136	699	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	80	369	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	191	809	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	110	500	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																													NEWRECORD																																		
TGFBR1	7046	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	136	763	3	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38967279	38967279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	77	514	0	ENST00000357387.3:c.1202G>A	p.Arg401His	p.R401H	ENST00000357387	NM_152756.3	401	cGt/cAt																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138453486	138453486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	62	678	0	ENST00000289153.2:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000289153	NM_006219.2	321	cGa/cAa																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27089730	27089730	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	88	339	0	ENST00000324856.7:c.2686G>T	p.Glu896Ter	p.E896*	ENST00000324856	NM_006015.4	896	Gaa/Taa																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106509723	106509723	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	108	606	2	ENST00000359195.3:c.1717G>T	p.Glu573Ter	p.E573*	ENST00000359195	NM_002649.2	573	Gaa/Taa																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63661997	63661997	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	109	495	0	ENST00000279873.7:c.101G>T	p.Arg34Ile	p.R34I	ENST00000279873	NM_032199.2	34	aGa/aTa																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32907000	32907000	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	64	368	0	ENST00000380152.3:c.1385A>G	p.Glu462Gly	p.E462G	ENST00000380152		462	gAa/gGa																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	93956552	93956552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	192	945	0	ENST00000369303.4:c.2684G>A	p.Arg895Gln	p.R895Q	ENST00000369303	NM_004440.3	895	cGa/cAa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	51	245	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs770248150		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	95	617	0	ENST00000256078.4:c.351A>C	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaC																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25976476	25976476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	159	830	0	ENST00000435504.4:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000435504		357	Cga/Tga																																													NEWRECORD																																		
SUZ12	23512	MSKCC	GRCh37	17	30322774	30322774	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	24	360	0	ENST00000322652.5:c.1787C>A	p.Thr596Asn	p.T596N	ENST00000322652	NM_015355.2	596	aCc/aAc																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49932714	49932714	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144584611		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	192	930	2	ENST00000296474.3:c.3157C>T	p.Arg1053Trp	p.R1053W	ENST00000296474	NM_002447.2	1053	Cgg/Tgg																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106197563	106197563	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745668941		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	138	748	1	ENST00000380013.4:c.5896C>T	p.Arg1966Cys	p.R1966C	ENST00000380013	NM_001127208.2	1966	Cgt/Tgt																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30681476	30681476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	118	615	0	ENST00000376406.3:c.536G>A	p.Arg179His	p.R179H	ENST00000376406	NM_014641.2	179	cGt/cAt																																													NEWRECORD																																		
SH2B3	10019	MSKCC	GRCh37	12	111856364	111856364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	24	219	1	ENST00000341259.2:c.415C>T	p.Arg139Cys	p.R139C	ENST00000341259	NM_005475.2	139	Cgc/Tgc																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55968610	55968610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	182	792	0	ENST00000263923.4:c.2053G>A	p.Glu685Lys	p.E685K	ENST00000263923	NM_002253.2	685	Gaa/Aaa																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16040679	16040679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	122	651	0	ENST00000268712.3:c.1455G>T	p.Glu485Asp	p.E485D	ENST00000268712	NM_006311.3	485	gaG/gaT																																													NEWRECORD																																		
ERRFI1	54206	MSKCC	GRCh37	1	8073667	8073667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1291	146	949	1	ENST00000377482.5:c.992G>A	p.Arg331His	p.R331H	ENST00000377482	NM_018948.3	331	cGc/cAc																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	116	618	0	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	149983275	149983275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	104	492	1	ENST00000253339.5:c.2983C>T	p.Arg995Cys	p.R995C	ENST00000253339		995	Cgc/Tgc																																													NEWRECORD																																		
CBL	867	MSKCC	GRCh37	11	119169179	119169179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150811339		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	114	503	0	ENST00000264033.4:c.2363G>A	p.Arg788Gln	p.R788Q	ENST00000264033	NM_005188.3	788	cGa/cAa																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587777894		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	102	642	0	ENST00000361445.4:c.6644C>A	p.Ser2215Tyr	p.S2215Y	ENST00000361445	NM_004958.3	2215	tCt/tAt																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372343	55372343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	63	361	0	ENST00000297316.4:c.1033G>A	p.Gly345Ser	p.G345S	ENST00000297316	NM_022454.3	345	Ggc/Agc																																													NEWRECORD																																		
REL	5966	MSKCC	GRCh37	2	61118821	61118821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146326268		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	73	408	2	ENST00000295025.8:c.14C>T	p.Ala5Val	p.A5V	ENST00000295025	NM_002908.2	5	gCg/gTg																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42002918	42002918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	147	835	1	ENST00000219905.7:c.2455C>T	p.Arg819Cys	p.R819C	ENST00000219905	NM_001164273.1	819	Cgt/Tgt																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47698180	47698180	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	64	448	2	ENST00000233146.2:c.1738G>T	p.Glu580Ter	p.E580*	ENST00000233146	NM_000251.2	580	Gaa/Taa																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151877154	151877154	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	119	527	0	ENST00000262189.6:c.7207C>T	p.Arg2403Ter	p.R2403*	ENST00000262189	NM_170606.2	2403	Cga/Tga																																													NEWRECORD																																		
PMS2	5395	MSKCC	GRCh37	7	6031648	6031648	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116314131		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	120	512	2	ENST00000265849.7:c.944G>A	p.Arg315Gln	p.R315Q	ENST00000265849	NM_000535.5	315	cGa/cAa																																													NEWRECORD																																		
GSK3B	2932	MSKCC	GRCh37	3	119582439	119582439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775606264		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	56	254	0	ENST00000316626.5:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000316626		321	cGa/cAa																																													NEWRECORD																																		
TSHR	7253	MSKCC	GRCh37	14	81554305	81554305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	140	817	1	ENST00000298171.2:c.325C>T	p.Arg109Trp	p.R109W	ENST00000298171	NM_000369.2	109	Cgg/Tgg																																													NEWRECORD																																		
XPO1	7514	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	127	760	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10260146	10260146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	138	650	3	ENST00000340748.4:c.2521G>A	p.Glu841Lys	p.E841K	ENST00000340748		841	Gaa/Aaa																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41765576	41765576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	130	714	0	ENST00000301178.4:c.2452G>A	p.Glu818Lys	p.E818K	ENST00000301178	NM_021913.4	818	Gaa/Aaa																																													NEWRECORD																																		
TOP1	7150	MSKCC	GRCh37	20	39690066	39690066	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	61	320	0	ENST00000361337.2:c.91C>T	p.Arg31Ter	p.R31*	ENST00000361337	NM_003286.2	31	Cga/Tga																																													NEWRECORD																																		
FGFR2	2263	MSKCC	GRCh37	10	123325170	123325170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	108	539	0	ENST00000358487.5:c.158C>T	p.Ala53Val	p.A53V	ENST00000358487	NM_000141.4	53	gCg/gTg																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118343913	118343913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	114	503	0	ENST00000534358.1:c.2039C>T	p.Ser680Leu	p.S680L	ENST00000534358	NM_005933.3	680	tCg/tTg																																													NEWRECORD																																		
MAP2K1	5604	MSKCC	GRCh37	15	66727423	66727423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	81	488	3	ENST00000307102.5:c.139C>T	p.Arg47Ter	p.R47*	ENST00000307102	NM_002755.3	47	Cga/Tga																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	12028618	12028618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	131	623	0	ENST00000353533.5:c.821G>T	p.Arg274Ile	p.R274I	ENST00000353533	NM_003010.3	274	aGa/aTa																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	126	604	1	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1035	172	878	2	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81953228	81953228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	163	874	7	ENST00000359376.3:c.2194C>T	p.Arg732Cys	p.R732C	ENST00000359376	NM_002661.3	732	Cgc/Tgc																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187510225	187510225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	141	690	3	ENST00000441802.2:c.13288G>A	p.Asp4430Asn	p.D4430N	ENST00000441802	NM_005245.3	4430	Gac/Aac																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46285669	46285669	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	117	550	0	ENST00000334344.6:c.5029C>T	p.Arg1677Ter	p.R1677*	ENST00000334344	NM_152641.2	1677	Cga/Tga																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	120	709	0	ENST00000320574.5:c.1231G>C	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ctg																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106508059	106508059	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142380460		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	72	280	0	ENST00000359195.3:c.53G>A	p.Arg18Gln	p.R18Q	ENST00000359195	NM_002649.2	18	cGa/cAa																																													NEWRECORD																																		
MYCL1	4610	MSKCC	GRCh37	1	40363091	40363091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142406322		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	150	632	0	ENST00000397332.2:c.1138C>T	p.Arg380Trp	p.R380W	ENST00000397332	NM_001033082.2	380	Cgg/Tgg																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198281544	198281544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	167	722	0	ENST00000335508.6:c.587G>A	p.Arg196Gln	p.R196Q	ENST00000335508	NM_012433.2	196	cGa/cAa																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117665261	117665261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	91	545	1	ENST00000368508.3:c.4486G>T	p.Asp1496Tyr	p.D1496Y	ENST00000368508	NM_002944.2	1496	Gac/Tac																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59763428	59763428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	92	499	0	ENST00000259008.2:c.2674C>A	p.Leu892Ile	p.L892I	ENST00000259008	NM_032043.2	892	Ctt/Att																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36252940	36252940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	131	522	0	ENST00000300305.3:c.422C>T	p.Ser141Leu	p.S141L	ENST00000300305		141	tCg/tTg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108163458	108163458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	129	693	1	ENST00000278616.4:c.4549C>A	p.Leu1517Ile	p.L1517I	ENST00000278616	NM_000051.3	1517	Ctt/Att																																													NEWRECORD																																		
MYD88	4615	MSKCC	GRCh37	3	38181926	38181926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	97	550	1	ENST00000396334.3:c.550G>A	p.Asp184Asn	p.D184N	ENST00000396334	NM_002468.4	184	Gac/Aac																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212251595	212251595	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1044752647		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	117	514	1	ENST00000342788.4:c.3464G>A	p.Arg1155Gln	p.R1155Q	ENST00000342788	NM_005235.2	1155	cGa/cAa																																													NEWRECORD																																		
TNFRSF14	8764	MSKCC	GRCh37	1	2489229	2489229	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	144	784	0	ENST00000355716.4:c.134A>G	p.Asp45Gly	p.D45G	ENST00000355716	NM_003820.2	45	gAc/gGc																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11188180	11188180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	64	332	0	ENST00000361445.4:c.5914C>T	p.Leu1972Phe	p.L1972F	ENST00000361445	NM_004958.3	1972	Ctc/Ttc																																													NEWRECORD																																		
CSF3R	1441	MSKCC	GRCh37	1	36932164	36932164	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201556754		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	171	888	4	ENST00000361632.4:c.2305C>T	p.Arg769Cys	p.R769C	ENST00000361632		769	Cgc/Tgc																																													NEWRECORD																																		
MPL	4352	MSKCC	GRCh37	1	43804370	43804370	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	153	613	1	ENST00000372470.3:c.370G>T	p.Val124Phe	p.V124F	ENST00000372470	NM_005373.2	124	Gtc/Ttc																																													NEWRECORD																																		
PIK3R3	8503	MSKCC	GRCh37	1	46511630	46511630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	130	670	0	ENST00000262741.5:c.1147C>T	p.Arg383Cys	p.R383C	ENST00000262741	NM_003629.3	383	Cgt/Tgt																																													NEWRECORD																																		
PIK3R3	8503	MSKCC	GRCh37	1	46531829	46531829	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	79	645	0	ENST00000262741.5:c.518A>C	p.Asn173Thr	p.N173T	ENST00000262741	NM_003629.3	173	aAt/aCt																																													NEWRECORD																																		
BCL10	8915	MSKCC	GRCh37	1	85733461	85733461	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1228	227	1063	0	ENST00000370580.1:c.551A>C	p.Asn184Thr	p.N184T	ENST00000370580	NM_003921.4	184	aAt/aCt																																													NEWRECORD																																		
BCL10	8915	MSKCC	GRCh37	1	85736321	85736321	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	166	783	0	ENST00000370580.1:c.326T>C	p.Ile109Thr	p.I109T	ENST00000370580	NM_003921.4	109	aTa/aCa																																													NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115251227	115251227	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	160	707	3	ENST00000369535.4:c.499C>T	p.Arg167Ter	p.R167*	ENST00000369535	NM_002524.4	167	Cga/Tga																																													NEWRECORD																																		
MCL1	4170	MSKCC	GRCh37	1	150551757	150551757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	24	138	0	ENST00000369026.2:c.250G>T	p.Ala84Ser	p.A84S	ENST00000369026	NM_021960.4	84	Gcc/Tcc																																													NEWRECORD																																		
RIT1	6016	MSKCC	GRCh37	1	155874172	155874172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	172	728	1	ENST00000368323.3:c.359G>A	p.Arg120Gln	p.R120Q	ENST00000368323	NM_006912.5	120	cGa/cAa																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162725452	162725452	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	131	637	0	ENST00000367921.3:c.566-2A>G		p.X189_splice	ENST00000367921	NM_006182.2	189																																														NEWRECORD																																		
AKT3	10000	MSKCC	GRCh37	1	243809195	243809195	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	50	603	0	ENST00000263826.5:c.429G>T	p.Lys143Asn	p.K143N	ENST00000263826	NM_005465.4	143	aaG/aaT																																													NEWRECORD																																		
MYCN	4613	MSKCC	GRCh37	2	16085689	16085689	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	111	617	0	ENST00000281043.3:c.865T>C	p.Ser289Pro	p.S289P	ENST00000281043	NM_005378.4	289	Tcc/Ccc																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25470522	25470522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	129	614	2	ENST00000264709.3:c.952C>T	p.Arg318Trp	p.R318W	ENST00000264709	NM_175629.2	318	Cgg/Tgg																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25965940	25965940	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	121	596	0	ENST00000435504.4:c.3266A>G	p.Asn1089Ser	p.N1089S	ENST00000435504		1089	aAc/aGc																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29451881	29451881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	152	733	0	ENST00000389048.3:c.2684C>A	p.Ser895Tyr	p.S895Y	ENST00000389048	NM_004304.4	895	tCt/tAt																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47637243	47637243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	102	463	0	ENST00000233146.2:c.377G>A	p.Gly126Asp	p.G126D	ENST00000233146	NM_000251.2	126	gGc/gAc																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48033605	48033605	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	38	310	0	ENST00000234420.5:c.3816A>C	p.Glu1272Asp	p.E1272D	ENST00000234420	NM_000179.2	1272	gaA/gaC																																													NEWRECORD																																		
REL	5966	MSKCC	GRCh37	2	61128173	61128173	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	61	291	0	ENST00000295025.8:c.349G>T	p.Glu117Ter	p.E117*	ENST00000295025	NM_002908.2	117	Gaa/Taa																																													NEWRECORD																																		
XPO1	7514	MSKCC	GRCh37	2	61713094	61713094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	83	391	2	ENST00000401558.2:c.2317G>A	p.Ala773Thr	p.A773T	ENST00000401558	NM_003400.3	773	Gct/Act																																													NEWRECORD																																		
XPO1	7514	MSKCC	GRCh37	2	61753652	61753652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	70	396	0	ENST00000401558.2:c.131G>T	p.Arg44Ile	p.R44I	ENST00000401558	NM_003400.3	44	aGa/aTa																																													NEWRECORD																																		
NFE2L2	4780	MSKCC	GRCh37	2	178095695	178095695	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	175	752	0	ENST00000397062.3:c.1636A>C	p.Asn546His	p.N546H	ENST00000397062	NM_006164.4	546	Aat/Cat																																													NEWRECORD																																		
PMS1	5378	MSKCC	GRCh37	2	190742014	190742014	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	111	544	0	ENST00000441310.2:c.2651T>A	p.Leu884Gln	p.L884Q	ENST00000441310	NM_000534.4	884	cTa/cAa																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198262793	198262793	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	137	537	0	ENST00000335508.6:c.3182A>C	p.Glu1061Ala	p.E1061A	ENST00000335508	NM_012433.2	1061	gAg/gCg																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202137487	202137487	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	137	671	1	ENST00000358485.4:c.715G>T	p.Glu239Ter	p.E239*	ENST00000358485	NM_001080125.1	239	Gaa/Taa																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202149601	202149601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	147	694	1	ENST00000358485.4:c.1042G>A	p.Val348Ile	p.V348I	ENST00000358485	NM_001080125.1	348	Gta/Ata																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212576844	212576844	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	109	578	0	ENST00000342788.4:c.1055A>G	p.Asn352Ser	p.N352S	ENST00000342788	NM_005235.2	352	aAc/aGc																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212652753	212652753	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	94	555	0	ENST00000342788.4:c.553G>T	p.Gly185Ter	p.G185*	ENST00000342788	NM_005235.2	185	Gga/Tga																																													NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215595211	215595211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	65	621	1	ENST00000260947.4:c.1925G>T	p.Arg642Ile	p.R642I	ENST00000260947	NM_000465.2	642	aGa/aTa																																													NEWRECORD																																		
INHA	3623	MSKCC	GRCh37	2	220439864	220439864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	135	858	0	ENST00000243786.2:c.717G>C	p.Trp239Cys	p.W239C	ENST00000243786	NM_002191.3	239	tgG/tgC																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227660327	227660327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	44	296	0	ENST00000305123.5:c.3128C>T	p.Ser1043Phe	p.S1043F	ENST00000305123	NM_005544.2	1043	tCc/tTc																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30686286	30686286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	139	549	0	ENST00000359013.4:c.217C>T	p.Pro73Ser	p.P73S	ENST00000359013	NM_001024847.2	73	Cca/Tca																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47161694	47161694	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	137	660	0	ENST00000409792.3:c.4432G>T	p.Glu1478Ter	p.E1478*	ENST00000409792	NM_014159.6	1478	Gaa/Taa																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47165106	47165106	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	58	380	0	ENST00000409792.3:c.1020A>C	p.Lys340Asn	p.K340N	ENST00000409792	NM_014159.6	340	aaA/aaC																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52623223	52623223	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	93	563	0	ENST00000394830.3:c.2828T>C	p.Leu943Ser	p.L943S	ENST00000394830	NM_018313.4	943	tTa/tCa																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71027140	71027140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	95	510	0	ENST00000318789.4:c.1187C>T	p.Ser396Leu	p.S396L	ENST00000318789	NM_032682.5	396	tCg/tTg																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89259016	89259016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	68	255	0	ENST00000336596.2:c.160G>A	p.Glu54Lys	p.E54K	ENST00000336596	NM_005233.5	54	Gag/Aag																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89259578	89259578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	77	409	0	ENST00000336596.2:c.722G>T	p.Arg241Met	p.R241M	ENST00000336596	NM_005233.5	241	aGg/aTg																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89448485	89448485	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	90	509	0	ENST00000336596.2:c.1449T>G	p.Ser483Arg	p.S483R	ENST00000336596	NM_005233.5	483	agT/agG																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89457220	89457220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	74	430	0	ENST00000336596.2:c.1701C>A	p.Phe567Leu	p.F567L	ENST00000336596	NM_005233.5	567	ttC/ttA																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138400852	138400852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	84	739	1	ENST00000289153.2:c.2461C>T	p.Arg821Cys	p.R821C	ENST00000289153	NM_006219.2	821	Cgc/Tgc																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138417818	138417818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	144	682	1	ENST00000289153.2:c.1701G>T	p.Glu567Asp	p.E567D	ENST00000289153	NM_006219.2	567	gaG/gaT																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142180893	142180893	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	99	596	0	ENST00000350721.4:c.7081C>A	p.His2361Asn	p.H2361N	ENST00000350721	NM_001184.3	2361	Cat/Aat																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142274755	142274755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	90	471	1	ENST00000350721.4:c.2305C>A	p.Leu769Ile	p.L769I	ENST00000350721	NM_001184.3	769	Cta/Ata																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142275252	142275252	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	113	585	0	ENST00000350721.4:c.2051C>A	p.Ser684Tyr	p.S684Y	ENST00000350721	NM_001184.3	684	tCt/tAt																																													NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185184727	185184727	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	143	649	0	ENST00000265026.3:c.1619A>G	p.His540Arg	p.H540R	ENST00000265026	NM_004721.4	540	cAc/cGc																																													NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189526295	189526295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	101	386	4	ENST00000264731.3:c.559G>A	p.Ala187Thr	p.A187T	ENST00000264731	NM_003722.4	187	Gcc/Acc																																													NEWRECORD																																		
PHOX2B	8929	MSKCC	GRCh37	4	41750542	41750542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	103	598	0	ENST00000226382.2:c.86C>T	p.Ala29Val	p.A29V	ENST00000226382	NM_003924.3	29	gCc/gTc																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55130038	55130038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	133	642	1	ENST00000257290.5:c.572C>T	p.Ala191Val	p.A191V	ENST00000257290	NM_006206.4	191	gCc/gTc																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66218771	66218771	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	92	686	0	ENST00000273854.3:c.2287A>G	p.Thr763Ala	p.T763A	ENST00000273854	NM_004439.5	763	Aca/Gca																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66231761	66231761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	88	486	0	ENST00000273854.3:c.1939G>T	p.Val647Leu	p.V647L	ENST00000273854	NM_004439.5	647	Gta/Tta																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66467917	66467917	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	121	657	0	ENST00000273854.3:c.352A>G	p.Ile118Val	p.I118V	ENST00000273854	NM_004439.5	118	Atc/Gtc																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66467948	66467948	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	62	675	0	ENST00000273854.3:c.321G>T	p.Gln107His	p.Q107H	ENST00000273854	NM_004439.5	107	caG/caT																																													NEWRECORD																																		
FAM175A	84142	MSKCC	GRCh37	4	84406219	84406219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	96	456	1	ENST00000321945.7:c.7G>A	p.Gly3Arg	p.G3R	ENST00000321945	NM_139076.2	3	Ggg/Agg																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143081579	143081579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	125	619	0	ENST00000262992.4:c.1495G>A	p.Asp499Asn	p.D499N	ENST00000262992	NM_001101669.1	499	Gac/Aac																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143081594	143081594	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	124	627	0	ENST00000262992.4:c.1480G>T	p.Glu494Ter	p.E494*	ENST00000262992	NM_001101669.1	494	Gag/Tag																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249456	153249456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	138	685	1	ENST00000281708.4:c.1322G>A	p.Arg441Gln	p.R441Q	ENST00000281708	NM_033632.3	441	cGg/cAg																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187628622	187628622	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	154	708	0	ENST00000441802.2:c.2360A>C	p.Lys787Thr	p.K787T	ENST00000441802	NM_005245.3	787	aAa/aCa																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38952460	38952460	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	105	444	0	ENST00000357387.3:c.2965A>G	p.Asn989Asp	p.N989D	ENST00000357387	NM_152756.3	989	Aac/Gac																																													NEWRECORD																																		
PLK2	10769	MSKCC	GRCh37	5	57753031	57753031	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs139008001		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	136	639	0	ENST00000274289.3:c.985A>G	p.Ile329Val	p.I329V	ENST00000274289	NM_006622.3	329	Att/Gtt																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86642542	86642542	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	38	325	0	ENST00000274376.6:c.1102+1G>A		p.X368_splice	ENST00000274376	NM_002890.2	368																																														NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86659246	86659246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	107	688	1	ENST00000274376.6:c.1535G>A	p.Arg512Gln	p.R512Q	ENST00000274376	NM_002890.2	512	cGa/cAa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112111411	112111411	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	83	482	0	ENST00000257430.4:c.508G>T	p.Asp170Tyr	p.D170Y	ENST00000257430	NM_000038.5	170	Gat/Tat																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173303	112173303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	95	596	0	ENST00000257430.4:c.2012C>A	p.Ser671Tyr	p.S671Y	ENST00000257430	NM_000038.5	671	tCt/tAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112177139	112177139	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	120	598	0	ENST00000257430.4:c.5848A>C	p.Lys1950Gln	p.K1950Q	ENST00000257430	NM_000038.5	1950	Aag/Cag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112177152	112177152	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	94	546	0	ENST00000257430.4:c.5861T>G	p.Phe1954Cys	p.F1954C	ENST00000257430	NM_000038.5	1954	tTt/tGt																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131944824	131944824	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	54	297	0	ENST00000265335.6:c.2845G>T	p.Glu949Ter	p.E949*	ENST00000265335		949	Gag/Tag																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176562826	176562826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	153	592	1	ENST00000439151.2:c.722G>T	p.Arg241Ile	p.R241I	ENST00000439151	NM_022455.4	241	aGa/aTa																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30673310	30673310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1273	279	1063	1	ENST00000376406.3:c.3650G>A	p.Arg1217Gln	p.R1217Q	ENST00000376406	NM_014641.2	1217	cGa/cAa																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32181016	32181016	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	111	585	0	ENST00000375023.3:c.2334T>G	p.Asn778Lys	p.N778K	ENST00000375023	NM_004557.3	778	aaT/aaG																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32189077	32189077	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	81	540	0	ENST00000375023.3:c.477C>A	p.Phe159Leu	p.F159L	ENST00000375023	NM_004557.3	159	ttC/ttA																																													NEWRECORD																																		
FYN	2534	MSKCC	GRCh37	6	112015685	112015685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	176	849	0	ENST00000368678.4:c.1157G>T	p.Arg386Ile	p.R386I	ENST00000368678		386	aGa/aTa																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117680985	117680985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	99	420	2	ENST00000368508.3:c.3635G>A	p.Arg1212His	p.R1212H	ENST00000368508	NM_002944.2	1212	cGc/cAc																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117681019	117681019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	137	568	0	ENST00000368508.3:c.3601G>T	p.Gly1201Trp	p.G1201W	ENST00000368508	NM_002944.2	1201	Ggg/Tgg																																													NEWRECORD																																		
IFNGR1	3459	MSKCC	GRCh37	6	137519451	137519451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	94	390	0	ENST00000367739.4:c.1187C>T	p.Ser396Leu	p.S396L	ENST00000367739	NM_000416.2	396	tCg/tTg																																													NEWRECORD																																		
IFNGR1	3459	MSKCC	GRCh37	6	137519731	137519731	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	42	403	0	ENST00000367739.4:c.907A>G	p.Lys303Glu	p.K303E	ENST00000367739	NM_000416.2	303	Aaa/Gaa																																													NEWRECORD																																		
IFNGR1	3459	MSKCC	GRCh37	6	137527278	137527278	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146914620		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	116	568	2	ENST00000367739.4:c.368G>A	p.Arg123Gln	p.R123Q	ENST00000367739	NM_000416.2	123	cGa/cAa																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	150005447	150005447	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	142	707	1	ENST00000253339.5:c.778G>T	p.Gly260Cys	p.G260C	ENST00000253339		260	Ggt/Tgt																																													NEWRECORD																																		
PARK2	5071	MSKCC	GRCh37	6	162475133	162475133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	103	737	0	ENST00000366898.1:c.608G>T	p.Gly203Val	p.G203V	ENST00000366898	NM_004562.2	203	gGg/gTg																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2974260	2974260	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	95	522	0	ENST00000396946.4:c.1345C>A	p.Leu449Met	p.L449M	ENST00000396946	NM_032415.4	449	Ctg/Atg																																													NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50468285	50468285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	69	386	0	ENST00000331340.3:c.1520C>T	p.Ser507Leu	p.S507L	ENST00000331340	NM_006060.4	507	tCg/tTg																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55224510	55224510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	121	701	0	ENST00000275493.2:c.1192G>A	p.Val398Ile	p.V398I	ENST00000275493	NM_005228.3	398	Gta/Ata																																													NEWRECORD																																		
CDK6	1021	MSKCC	GRCh37	7	92404108	92404108	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	131	548	2	ENST00000265734.4:c.271G>T	p.Glu91Ter	p.E91*	ENST00000265734	NM_001259.6	91	Gaa/Taa																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106509182	106509182	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	131	689	0	ENST00000359195.3:c.1176A>C	p.Gln392His	p.Q392H	ENST00000359195	NM_002649.2	392	caA/caC																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116340201	116340201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	134	604	0	ENST00000397752.3:c.1063G>A	p.Glu355Lys	p.E355K	ENST00000397752	NM_000245.2	355	Gaa/Aaa																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116417442	116417442	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	84	566	0	ENST00000397752.3:c.3260-1G>A		p.X1087_splice	ENST00000397752	NM_000245.2	1087																																														NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116435812	116435812	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	176	828	0	ENST00000397752.3:c.3902G>T	p.Arg1301Ile	p.R1301I	ENST00000397752	NM_000245.2	1301	aGa/aTa																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140494182	140494182	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	142	674	1	ENST00000288602.6:c.1066C>A	p.Gln356Lys	p.Q356K	ENST00000288602	NM_004333.4	356	Caa/Aaa																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140494188	140494188	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	137	642	0	ENST00000288602.6:c.1060C>T	p.Arg354Ter	p.R354*	ENST00000288602	NM_004333.4	354	Cga/Tga																																													NEWRECORD																																		
RHEB	6009	MSKCC	GRCh37	7	151164278	151164278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	145	594	0	ENST00000262187.5:c.482G>A	p.Arg161Gln	p.R161Q	ENST00000262187	NM_005614.3	161	cGa/cAa																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151859303	151859303	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	113	546	0	ENST00000262189.6:c.11359T>C	p.Ser3787Pro	p.S3787P	ENST00000262189	NM_170606.2	3787	Tct/Cct																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151874616	151874616	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	109	616	4	ENST00000262189.6:c.7922C>A	p.Ser2641Ter	p.S2641*	ENST00000262189	NM_170606.2	2641	tCa/tAa																																													NEWRECORD																																		
TGFBR1	7046	MSKCC	GRCh37	9	101910053	101910053	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	111	544	2	ENST00000374994.4:c.1373G>A	p.Trp458Ter	p.W458*	ENST00000374994	NM_004612.2	458	tGg/tAg																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135797217	135797217	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	123	631	0	ENST00000298552.3:c.652G>T	p.Glu218Ter	p.E218*	ENST00000298552	NM_001162426.1	218	Gaa/Taa																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139393588	139393588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	113	642	0	ENST00000277541.6:c.6058G>A	p.Asp2020Asn	p.D2020N	ENST00000277541	NM_017617.3	2020	Gac/Aac																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139408975	139408975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	91	469	0	ENST00000277541.6:c.2194G>A	p.Asp732Asn	p.D732N	ENST00000277541	NM_017617.3	732	Gac/Aac																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139409769	139409769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	99	536	3	ENST00000277541.6:c.1987G>A	p.Glu663Lys	p.E663K	ENST00000277541	NM_017617.3	663	Gag/Aag																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70333069	70333069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	150	765	0	ENST00000373644.4:c.974C>A	p.Ser325Tyr	p.S325Y	ENST00000373644	NM_030625.2	325	tCt/tAt																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70405821	70405821	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	120	632	0	ENST00000373644.4:c.3335T>C	p.Val1112Ala	p.V1112A	ENST00000373644	NM_030625.2	1112	gTa/gCa																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70406103	70406103	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	107	515	0	ENST00000373644.4:c.3617T>A	p.Phe1206Tyr	p.F1206Y	ENST00000373644	NM_030625.2	1206	tTt/tAt																																													NEWRECORD																																		
BMPR1A	657	MSKCC	GRCh37	10	88672088	88672088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	39	206	0	ENST00000372037.3:c.622G>T	p.Asp208Tyr	p.D208Y	ENST00000372037	NM_004329.2	208	Gac/Tac																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89692918	89692918	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	78	400	0	ENST00000371953.3:c.402G>T	p.Met134Ile	p.M134I	ENST00000371953	NM_000314.4	134	atG/atT																																													NEWRECORD																																		
MYOD1	4654	MSKCC	GRCh37	11	17741411	17741411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	163	704	0	ENST00000250003.3:c.82G>A	p.Asp28Asn	p.D28N	ENST00000250003	NM_002478.4	28	Gac/Aac																																													NEWRECORD																																		
PAK1	5058	MSKCC	GRCh37	11	77043819	77043819	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371644543		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	189	765	2	ENST00000356341.3:c.1507G>A	p.Glu503Lys	p.E503K	ENST00000356341	NM_002576.4	503	Gag/Aag																																													NEWRECORD																																		
PAK1	5058	MSKCC	GRCh37	11	77047151	77047151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	151	708	1	ENST00000356341.3:c.1393C>T	p.Leu465Phe	p.L465F	ENST00000356341	NM_002576.4	465	Ctc/Ttc																																													NEWRECORD																																		
BIRC3	330	MSKCC	GRCh37	11	102201966	102201966	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	144	795	0	ENST00000263464.3:c.1318G>T	p.Glu440Ter	p.E440*	ENST00000263464	NM_001165.4	440	Gaa/Taa																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108160347	108160347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	63	322	0	ENST00000278616.4:c.4255C>A	p.Leu1419Ile	p.L1419I	ENST00000278616	NM_000051.3	1419	Ctt/Att																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118342998	118342998	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	112	470	0	ENST00000534358.1:c.1124T>G	p.Leu375Arg	p.L375R	ENST00000534358	NM_005933.3	375	cTc/cGc																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118343956	118343956	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	121	491	0	ENST00000534358.1:c.2082C>A	p.Ser694Arg	p.S694R	ENST00000534358	NM_005933.3	694	agC/agA																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118344944	118344944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	104	485	1	ENST00000534358.1:c.3070G>A	p.Ala1024Thr	p.A1024T	ENST00000534358	NM_005933.3	1024	Gcc/Acc																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	422312	422312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	144	802	0	ENST00000399788.2:c.2946G>T	p.Lys982Asn	p.K982N	ENST00000399788	NM_001042603.1	982	aaG/aaT																																													NEWRECORD																																		
ETV6	2120	MSKCC	GRCh37	12	12037430	12037430	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	138	691	0	ENST00000396373.4:c.1061A>G	p.Tyr354Cys	p.Y354C	ENST00000396373	NM_001987.4	354	tAc/tGc																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18435088	18435088	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	75	491	0	ENST00000266497.5:c.73C>A	p.Leu25Ile	p.L25I	ENST00000266497		25	Ctc/Atc																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46240719	46240719	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	117	537	0	ENST00000334344.6:c.1579T>C	p.Trp527Arg	p.W527R	ENST00000334344	NM_152641.2	527	Tgg/Cgg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49425016	49425016	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	171	697	0	ENST00000301067.7:c.13472T>G	p.Ile4491Ser	p.I4491S	ENST00000301067	NM_003482.3	4491	aTt/aGt																																													NEWRECORD																																		
SMARCD1	6602	MSKCC	GRCh37	12	50479274	50479274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	60	471	0	ENST00000394963.4:c.122G>A	p.Gly41Asp	p.G41D	ENST00000394963	NM_003076.4	41	gGc/gAc																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56478938	56478938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	146	730	1	ENST00000267101.3:c.394C>T	p.Arg132Cys	p.R132C	ENST00000267101	NM_001982.3	132	Cgc/Tgc																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56490564	56490564	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	110	602	0	ENST00000267101.3:c.2208G>T	p.Lys736Asn	p.K736N	ENST00000267101	NM_001982.3	736	aaG/aaT																																													NEWRECORD																																		
HNF1A	6927	MSKCC	GRCh37	12	121432067	121432067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	147	688	1	ENST00000257555.6:c.814C>T	p.Arg272Cys	p.R272C	ENST00000257555		272	Cgc/Tgc																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133201360	133201360	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	143	702	0	ENST00000320574.5:c.6784G>T	p.Ala2262Ser	p.A2262S	ENST00000320574	NM_006231.2	2262	Gcc/Tcc																																													NEWRECORD																																		
CDK8	1024	MSKCC	GRCh37	13	26967543	26967543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	54	659	0	ENST00000381527.3:c.686C>T	p.Thr229Met	p.T229M	ENST00000381527	NM_001260.1	229	aCg/aTg																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28931804	28931804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	114	628	0	ENST00000282397.4:c.2135G>T	p.Gly712Val	p.G712V	ENST00000282397	NM_002019.4	712	gGa/gTa																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	29005299	29005299	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	109	537	0	ENST00000282397.4:c.962C>A	p.Ser321Tyr	p.S321Y	ENST00000282397	NM_002019.4	321	tCt/tAt																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32906611	32906611	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	37	437	0	ENST00000380152.3:c.996T>G	p.Ile332Met	p.I332M	ENST00000380152		332	atT/atG																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32906930	32906930	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	52	318	0	ENST00000380152.3:c.1315T>G	p.Phe439Val	p.F439V	ENST00000380152		439	Ttt/Gtt																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32912209	32912209	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	185	997	0	ENST00000380152.3:c.3717A>C	p.Lys1239Asn	p.K1239N	ENST00000380152		1239	aaA/aaC																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32954027	32954027	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	93	590	1	ENST00000380152.3:c.9094A>T	p.Lys3032Ter	p.K3032*	ENST00000380152		3032	Aaa/Taa																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32972643	32972643	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	87	457	0	ENST00000380152.3:c.9993T>G	p.Ile3331Met	p.I3331M	ENST00000380152		3331	atT/atG																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32972674	32972674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	92	554	0	ENST00000380152.3:c.10024G>A	p.Glu3342Lys	p.E3342K	ENST00000380152		3342	Gaa/Aaa																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110436912	110436912	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	28	209	0	ENST00000375856.3:c.1489T>G	p.Phe497Val	p.F497V	ENST00000375856	NM_003749.2	497	Ttc/Gtc																																													NEWRECORD																																		
TSHR	7253	MSKCC	GRCh37	14	81557479	81557479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	92	613	0	ENST00000298171.2:c.459C>A	p.Phe153Leu	p.F153L	ENST00000298171	NM_000369.2	153	ttC/ttA																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	41961238	41961238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	194	1018	0	ENST00000219905.7:c.146C>T	p.Ala49Val	p.A49V	ENST00000219905	NM_001164273.1	49	gCt/gTt																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007686	45007686	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	100	438	0	ENST00000558401.1:c.133T>G	p.Cys45Gly	p.C45G	ENST00000558401	NM_004048.2	45	Tgc/Ggc																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007818	45007818	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	118	516	1	ENST00000558401.1:c.265G>T	p.Glu89Ter	p.E89*	ENST00000558401	NM_004048.2	89	Gaa/Taa																																													NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91354503	91354503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	97	470	0	ENST00000355112.3:c.3943C>T	p.Leu1315Phe	p.L1315F	ENST00000355112	NM_000057.2	1315	Ctc/Ttc																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2108760	2108760	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	137	736	1	ENST00000219476.3:c.861G>T	p.Glu287Asp	p.E287D	ENST00000219476	NM_000548.3	287	gaG/gaT																																													NEWRECORD																																		
TRAF7	84231	MSKCC	GRCh37	16	2225549	2225549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	125	608	1	ENST00000326181.6:c.1552G>A	p.Gly518Ser	p.G518S	ENST00000326181	NM_032271.2	518	Ggc/Agc																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3788637	3788637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	125	554	0	ENST00000262367.5:c.4317C>A	p.Phe1439Leu	p.F1439L	ENST00000262367	NM_004380.2	1439	ttC/ttA																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3808003	3808003	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	131	492	0	ENST00000262367.5:c.3416A>C	p.Lys1139Thr	p.K1139T	ENST00000262367	NM_004380.2	1139	aAg/aCg																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3819355	3819355	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	83	301	0	ENST00000262367.5:c.2881-1G>A		p.X961_splice	ENST00000262367	NM_004380.2	961																																														NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9858709	9858709	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	141	672	2	ENST00000330684.3:c.2692C>A	p.Leu898Ile	p.L898I	ENST00000330684	NM_001134407.1	898	Ctc/Atc																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9934633	9934633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	116	492	0	ENST00000330684.3:c.1522G>A	p.Ala508Thr	p.A508T	ENST00000330684	NM_001134407.1	508	Gca/Aca																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23641455	23641455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	88	827	0	ENST00000261584.4:c.2020G>A	p.Asp674Asn	p.D674N	ENST00000261584	NM_024675.3	674	Gac/Aac																																													NEWRECORD																																		
NUP93	9688	MSKCC	GRCh37	16	56832410	56832410	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	175	859	0	ENST00000308159.5:c.320A>G	p.Asp107Gly	p.D107G	ENST00000308159	NM_014669.4	107	gAc/gGc																																													NEWRECORD																																		
NUP93	9688	MSKCC	GRCh37	16	56864551	56864551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	196	829	0	ENST00000308159.5:c.1039G>A	p.Glu347Lys	p.E347K	ENST00000308159	NM_014669.4	347	Gag/Aag																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67116123	67116123	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	130	485	0	ENST00000412916.2:c.407A>G	p.Asp136Gly	p.D136G	ENST00000412916		136	gAt/gGt																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67655374	67655374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	141	644	2	ENST00000264010.4:c.1237C>T	p.His413Tyr	p.H413Y	ENST00000264010	NM_006565.3	413	Cat/Tat																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72828045	72828045	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1272	202	1194	0	ENST00000268489.5:c.8536A>G	p.Thr2846Ala	p.T2846A	ENST00000268489	NM_006885.3	2846	Aca/Gca																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72831909	72831909	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1192	235	1062	0	ENST00000268489.5:c.4672A>C	p.Asn1558His	p.N1558H	ENST00000268489	NM_006885.3	1558	Aat/Cat																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72832394	72832394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	211	930	5	ENST00000268489.5:c.4187G>A	p.Arg1396His	p.R1396H	ENST00000268489	NM_006885.3	1396	cGc/cAc																																													NEWRECORD																																		
GPS2	2874	MSKCC	GRCh37	17	7217817	7217817	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1194	110	1014	0	ENST00000380728.2:c.194C>G	p.Thr65Ser	p.T65S	ENST00000380728		65	aCc/aGc																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15950304	15950304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	164	784	1	ENST00000268712.3:c.6640C>T	p.Arg2214Cys	p.R2214C	ENST00000268712	NM_006311.3	2214	Cgt/Tgt																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37649073	37649073	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	130	589	0	ENST00000447079.4:c.2178G>C	p.Lys726Asn	p.K726N	ENST00000447079	NM_015083.1	726	aaG/aaC																																													NEWRECORD																																		
RARA	5914	MSKCC	GRCh37	17	38506046	38506046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	128	553	0	ENST00000254066.5:c.338G>A	p.Arg113His	p.R113H	ENST00000254066	NM_000964.3	113	cGc/cAc																																													NEWRECORD																																		
SPOP	8405	MSKCC	GRCh37	17	47688750	47688750	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	138	519	1	ENST00000347630.2:c.550T>C	p.Cys184Arg	p.C184R	ENST00000347630	NM_001007230.1	184	Tgc/Cgc																																													NEWRECORD																																		
SPOP	8405	MSKCC	GRCh37	17	47696663	47696663	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	159	741	1	ENST00000347630.2:c.285G>T	p.Lys95Asn	p.K95N	ENST00000347630	NM_001007230.1	95	aaG/aaT																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59763235	59763235	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	90	609	1	ENST00000259008.2:c.2867C>A	p.Ser956Ter	p.S956*	ENST00000259008	NM_032043.2	956	tCa/tAa																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59924493	59924493	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	154	734	0	ENST00000259008.2:c.596T>C	p.Leu199Pro	p.L199P	ENST00000259008	NM_032043.2	199	cTg/cCg																																													NEWRECORD																																		
YES1	7525	MSKCC	GRCh37	18	732848	732848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	146	756	2	ENST00000314574.4:c.1409G>A	p.Arg470Gln	p.R470Q	ENST00000314574	NM_005433.3	470	cGa/cAa																																													NEWRECORD																																		
GNA11	2767	MSKCC	GRCh37	19	3110155	3110155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	39	351	0	ENST00000078429.4:c.145G>A	p.Glu49Lys	p.E49K	ENST00000078429	NM_002067.2	49	Gag/Aag																																													NEWRECORD																																		
GNA11	2767	MSKCC	GRCh37	19	3115048	3115048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	100	581	1	ENST00000078429.4:c.583G>A	p.Asp195Asn	p.D195N	ENST00000078429	NM_002067.2	195	Gac/Aac																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5274217	5274217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	121	651	0	ENST00000357368.4:c.230G>A	p.Arg77His	p.R77H	ENST00000357368	NM_002850.3	77	cGc/cAc																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10246481	10246481	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	101	449	0	ENST00000340748.4:c.4656G>T	p.Glu1552Asp	p.E1552D	ENST00000340748		1552	gaG/gaT																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11152203	11152203	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	125	567	0	ENST00000344626.4:c.4391A>C	p.Lys1464Thr	p.K1464T	ENST00000344626	NM_003072.3	1464	aAg/aCg																																													NEWRECORD																																		
DNAJB1	3337	MSKCC	GRCh37	19	14626848	14626848	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	184	974	0	ENST00000254322.2:c.927G>T	p.Glu309Asp	p.E309D	ENST00000254322	NM_006145.1	309	gaG/gaT																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15383651	15383651	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	117	525	0	ENST00000263377.2:c.260T>G	p.Val87Gly	p.V87G	ENST00000263377	NM_058243.2	87	gTg/gGg																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17946842	17946842	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs147408277		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	105	655	0	ENST00000458235.1:c.1805T>C	p.Phe602Ser	p.F602S	ENST00000458235	NM_000215.3	602	tTt/tCt																																													NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31368254	31368254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	84	442	2	ENST00000328111.2:c.125G>A	p.Arg42His	p.R42H	ENST00000328111	NM_006892.3	42	cGc/cAc																																													NEWRECORD																																		
AURKA	6790	MSKCC	GRCh37	20	54959350	54959350	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	82	518	0	ENST00000312783.6:c.350A>C	p.Lys117Thr	p.K117T	ENST00000312783	NM_198436.1	117	aAa/aCa																																													NEWRECORD																																		
CHEK2	11200	MSKCC	GRCh37	22	29090065	29090065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	23	142	0	ENST00000328354.6:c.1416G>T	p.Lys472Asn	p.K472N	ENST00000328354	NM_007194.3	472	aaG/aaT																																													NEWRECORD																																		
CHEK2	11200	MSKCC	GRCh37	22	29090088	29090088	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	19	96	0	ENST00000328354.6:c.1393A>G	p.Lys465Glu	p.K465E	ENST00000328354	NM_007194.3	465	Aag/Gag																																													NEWRECORD																																		
CRLF2	64109	MSKCC	GRCh37	X	1327732	1327732	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	154	743	0	ENST00000381566.1:c.149A>C	p.Lys50Thr	p.K50T	ENST00000381566		50	aAa/aCa																																													NEWRECORD																																		
ZRSR2	8233	MSKCC	GRCh37	X	15841301	15841301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	142	344	0	ENST00000307771.7:c.1385G>A	p.Arg462Gln	p.R462Q	ENST00000307771	NM_005089.3	462	cGa/cAa																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39933958	39933958	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	185	437	4	ENST00000378444.4:c.641C>A	p.Ser214Ter	p.S214*	ENST00000378444	NM_001123385.1	214	tCa/tAa																																													NEWRECORD																																		
ARAF	369	MSKCC	GRCh37	X	47424297	47424297	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	125	323	0	ENST00000377045.4:c.302T>G	p.Phe101Cys	p.F101C	ENST00000377045	NM_001654.4	101	tTt/tGt																																													NEWRECORD																																		
BTK	695	MSKCC	GRCh37	X	100608930	100608930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	152	408	0	ENST00000308731.7:c.1678C>A	p.Pro560Thr	p.P560T	ENST00000308731	NM_000061.2	560	Cca/Aca																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123190082	123190082	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	103	272	0	ENST00000218089.9:c.1301A>G	p.Lys434Arg	p.K434R	ENST00000218089	NM_001042749.1	434	aAa/aGa																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123202447	123202447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	119	408	0	ENST00000218089.9:c.2299G>T	p.Val767Leu	p.V767L	ENST00000218089	NM_001042749.1	767	Gta/Tta																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123224539	123224539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	206	470	1	ENST00000218089.9:c.3392G>T	p.Arg1131Ile	p.R1131I	ENST00000218089	NM_001042749.1	1131	aGa/aTa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112177434	112177435	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	64	582	2	ENST00000257430.4:c.6149dupA	p.Lys2051GlufsTer9	p.K2051Efs*9	ENST00000257430	NM_000038.5	2048	cca/ccAa																																													NEWRECORD																																		
IKBKE	9641	MSKCC	GRCh37	1	206651679	206651679	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			112	684	393	0	ENST00000367120.3:c.989A>G	p.Asn330Ser	p.N330S	ENST00000367120	NM_014002.3	330	aAc/aGc																																													NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189612124	189612124	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			3903	933	608	1	ENST00000264731.3:c.1876G>T	p.Val626Phe	p.V626F	ENST00000264731	NM_003722.4	626	Gtc/Ttc																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32172139	32172139	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			721	40	498	0	ENST00000375023.3:c.2893T>A	p.Cys965Ser	p.C965S	ENST00000375023	NM_004557.3	965	Tgc/Agc																																													NEWRECORD																																		
FGFR2	2263	MSKCC	GRCh37	10	123325164	123325164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1252	161	502	0	ENST00000358487.5:c.164G>A	p.Gly55Glu	p.G55E	ENST00000358487	NM_000141.4	55	gGg/gAg																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	29001978	29001978	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			691	204	520	0	ENST00000282397.4:c.1187C>G	p.Thr396Ser	p.T396S	ENST00000282397	NM_002019.4	396	aCt/aGt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0001622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			166	1218	600	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29528073	29528073	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			564	109	197	0	ENST00000358273.4:c.1081A>T	p.Ser361Cys	p.S361C	ENST00000358273	NM_001042492.2	361	Agt/Tgt																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10610359	10610359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			486	706	558	0	ENST00000171111.5:c.351G>T	p.Glu117Asp	p.E117D	ENST00000171111	NM_203500.1	117	gaG/gaT																																													NEWRECORD																																		
GATA1	2623	MSKCC	GRCh37	X	48650778	48650778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			94	798	344	1	ENST00000376670.3:c.647G>A	p.Arg216Gln	p.R216Q	ENST00000376670	NM_002049.3	216	cGg/cAg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49440430	49440431	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	516	455	0	ENST00000301067.7:c.4379dupC	p.Leu1461ThrfsTer30	p.L1461Tfs*30	ENST00000301067	NM_003482.3	1460	cca/ccCa																																													NEWRECORD																																		
FGF19	9965	MSKCC	GRCh37	11	69518477	69518478	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0001622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	247	303	0	ENST00000294312.3:c.167_168delinsAA	p.Ser56Ter	p.S56*	ENST00000294312	NM_005117.2	56	tCC/tAA																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	48	447	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023559	27023560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	44	704	1	ENST00000324856.7:c.671dup	p.Pro225AlafsTer175	p.P225Afs*175	ENST00000324856	NM_006015.4	222	tac/taCc																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604768	48604768	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	68	556	0	ENST00000342988.3:c.1591del	p.Arg531GlyfsTer6	p.R531Gfs*6	ENST00000342988	NM_005359.5	530	caC/ca																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23641718	23641724	+	protein_altering_variant	In_Frame_Del	DEL	TCATCAT	TCATCAT	C			P-0012972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	65	538	0	ENST00000261584.4:c.1751_1757delinsG	p.Asp584_Asp586delinsGly	p.D584_D586delinsG	ENST00000261584	NM_024675.3	584	gATGATGAt/gGt																																													NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	43	156	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	97	227	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	108	250	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	30	78	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70441157	70441157	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	134	312	0	ENST00000373644.4:c.4832delA	p.Asn1611ThrfsTer13	p.N1611Tfs*13	ENST00000373644	NM_030625.2	1609	gAa/ga																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	76	216	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																													NEWRECORD																																		
FGF3	2248	MSKCC	GRCh37	11	69625281	69625281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35983315		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	62	359	1	ENST00000334134.2:c.512G>A	p.Arg171His	p.R171H	ENST00000334134	NM_005247.2	171	cGc/cAc																																													NEWRECORD																																		
FGF3	2248	MSKCC	GRCh37	11	69625080	69625080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	18	130	0	ENST00000334134.2:c.713C>T	p.Ala238Val	p.A238V	ENST00000334134	NM_005247.2	238	gCg/gTg																																													NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	122	623	6	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																													NEWRECORD																																		
MRE11A	4361	MSKCC	GRCh37	11	94203691	94203691	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	125	277	2	ENST00000323929.3:c.963del	p.Phe321LeufsTer8	p.F321Lfs*8	ENST00000323929	NM_005591.3	321	ttT/tt																																													NEWRECORD																																		
ID3	3399	MSKCC	GRCh37	1	23885643	23885643	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	131	477	0	ENST00000374561.5:c.275C>A	p.Pro92His	p.P92H	ENST00000374561	NM_002167.4	92	cCt/cAt																																													NEWRECORD																																		
NEGR1	257194	MSKCC	GRCh37	1	72076815	72076815	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	123	247	1	ENST00000357731.5:c.682C>G	p.Gln228Glu	p.Q228E	ENST00000357731	NM_173808.2	228	Cag/Gag																																													NEWRECORD																																		
BCL2L11	10018	MSKCC	GRCh37	2	111907683	111907683	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146318804		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	77	239	0	ENST00000393256.3:c.457C>T	p.Arg153Trp	p.R153W	ENST00000393256	NM_006538.4	153	Cgg/Tgg																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202150030	202150030	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	47	152	0	ENST00000358485.4:c.1471C>T	p.Arg491Ter	p.R491*	ENST00000358485	NM_001080125.1	491	Cga/Tga																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49932614	49932614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	94	365	0	ENST00000296474.3:c.3257G>A	p.Arg1086Gln	p.R1086Q	ENST00000296474	NM_002447.2	1086	cGa/cAa																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49940468	49940468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	134	526	0	ENST00000296474.3:c.575G>A	p.Gly192Asp	p.G192D	ENST00000296474	NM_002447.2	192	gGc/gAc																																													NEWRECORD																																		
BAP1	8314	MSKCC	GRCh37	3	52436857	52436857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	81	320	0	ENST00000460680.1:c.1921G>A	p.Ala641Thr	p.A641T	ENST00000460680	NM_004656.3	641	Gct/Act																																													NEWRECORD																																		
GATA2	2624	MSKCC	GRCh37	3	128200768	128200768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	55	198	0	ENST00000341105.2:c.1037G>T	p.Gly346Val	p.G346V	ENST00000341105	NM_032638.4	346	gGc/gTc																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134880887	134880887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	86	262	0	ENST00000398015.3:c.1450G>A	p.Ala484Thr	p.A484T	ENST00000398015	NM_004441.4	484	Gcc/Acc																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106196328	106196328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	125	284	0	ENST00000380013.4:c.4661C>T	p.Thr1554Ile	p.T1554I	ENST00000380013	NM_001127208.2	1554	aCa/aTa																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106197190	106197190	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	65	139	0	ENST00000380013.4:c.5523G>T	p.Glu1841Asp	p.E1841D	ENST00000380013	NM_001127208.2	1841	gaG/gaT																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187524899	187524899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	92	295	1	ENST00000441802.2:c.10781G>A	p.Ser3594Asn	p.S3594N	ENST00000441802	NM_005245.3	3594	aGc/aAc																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67575474	67575474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	103	198	0	ENST00000274335.5:c.547G>A	p.Ala183Thr	p.A183T	ENST00000274335		183	Gct/Act																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67593343	67593343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	121	313	0	ENST00000274335.5:c.2089C>T	p.His697Tyr	p.H697Y	ENST00000274335		697	Cat/Tat																																													NEWRECORD																																		
CSF1R	1436	MSKCC	GRCh37	5	149449546	149449546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	75	330	0	ENST00000286301.3:c.1400C>T	p.Thr467Met	p.T467M	ENST00000286301	NM_005211.3	467	aCg/aTg																																													NEWRECORD																																		
HIST1H3F	8968	MSKCC	GRCh37	6	26250724	26250724	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	158	442	0	ENST00000446824.2:c.110A>G	p.Lys37Arg	p.K37R	ENST00000446824	NM_021018.2	37	aAg/aGg																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32166285	32166285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	81	211	0	ENST00000375023.3:c.4669G>A	p.Gly1557Ser	p.G1557S	ENST00000375023	NM_004557.3	1557	Ggc/Agc																																													NEWRECORD																																		
PARK2	5071	MSKCC	GRCh37	6	162394349	162394349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	95	236	0	ENST00000366898.1:c.719C>T	p.Thr240Met	p.T240M	ENST00000366898	NM_004562.2	240	aCg/aTg																																													NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50468150	50468150	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	73	171	0	ENST00000331340.3:c.1385A>G	p.Tyr462Cys	p.Y462C	ENST00000331340	NM_006060.4	462	tAc/tGc																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106513046	106513046	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	63	164	0	ENST00000359195.3:c.2060G>A	p.Arg687Lys	p.R687K	ENST00000359195	NM_002649.2	687	aGa/aAa																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139396823	139396823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	56	242	0	ENST00000277541.6:c.5285G>A	p.Arg1762Gln	p.R1762Q	ENST00000277541	NM_017617.3	1762	cGg/cAg																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70333182	70333182	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	83	327	0	ENST00000373644.4:c.1087T>G	p.Ser363Ala	p.S363A	ENST00000373644	NM_030625.2	363	Tct/Gct																																													NEWRECORD																																		
MYOD1	4654	MSKCC	GRCh37	11	17741573	17741573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	54	129	1	ENST00000250003.3:c.244C>T	p.Arg82Cys	p.R82C	ENST00000250003	NM_002478.4	82	Cgc/Tgc																																													NEWRECORD																																		
RPS6KB2	6199	MSKCC	GRCh37	11	67200841	67200841	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	69	303	0	ENST00000312629.5:c.829A>C	p.Thr277Pro	p.T277P	ENST00000312629	NM_003952.2	277	Acc/Ccc																																													NEWRECORD																																		
SMARCD1	6602	MSKCC	GRCh37	12	50484049	50484049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	77	226	0	ENST00000394963.4:c.899G>A	p.Arg300His	p.R300H	ENST00000394963	NM_003076.4	300	cGc/cAc																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95590990	95590990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	59	119	0	ENST00000343455.3:c.919C>T	p.Arg307Cys	p.R307C	ENST00000343455	NM_177438.2	307	Cgt/Tgt																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23641679	23641679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	92	264	0	ENST00000261584.4:c.1796G>A	p.Ser599Asn	p.S599N	ENST00000261584	NM_024675.3	599	aGt/aAt																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72984704	72984704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	145	543	0	ENST00000268489.5:c.2880G>A	p.Met960Ile	p.M960I	ENST00000268489	NM_006885.3	960	atG/atA																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29533279	29533279	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	92	232	0	ENST00000358273.4:c.1282A>G	p.Lys428Glu	p.K428E	ENST00000358273	NM_001042492.2	428	Aag/Gag																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56448270	56448270	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	48	98	0	ENST00000407977.2:c.375+2T>C		p.X125_splice	ENST00000407977		125																																														NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2213969	2213969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	36	102	0	ENST00000398665.3:c.1781G>A	p.Gly594Asp	p.G594D	ENST00000398665	NM_032482.2	594	gGc/gAc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5222993	5222993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	20	136	0	ENST00000357368.4:c.2810C>T	p.Ala937Val	p.A937V	ENST00000357368	NM_002850.3	937	gCg/gTg																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7172331	7172331	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758151117		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	99	330	0	ENST00000302850.5:c.1238G>A	p.Arg413His	p.R413H	ENST00000302850	NM_000208.2	413	cGt/cAt																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15281250	15281250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1184522923		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	42	231	0	ENST00000263388.2:c.5006G>A	p.Arg1669His	p.R1669H	ENST00000263388	NM_000435.2	1669	cGc/cAc																																													NEWRECORD																																		
TOP1	7150	MSKCC	GRCh37	20	39721126	39721126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	95	211	0	ENST00000361337.2:c.629G>A	p.Arg210His	p.R210H	ENST00000361337	NM_003286.2	210	cGc/cAc																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36231788	36231788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	72	203	0	ENST00000300305.3:c.596G>T	p.Gly199Val	p.G199V	ENST00000300305		199	gGg/gTg																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41551089	41551089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	90	486	0	ENST00000263253.7:c.3233C>A	p.Pro1078His	p.P1078H	ENST00000263253	NM_001429.3	1078	cCt/cAt																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66766451	66766451	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			29	40	79	0	ENST00000374690.3:c.1463A>G	p.Gln488Arg	p.Q488R	ENST00000374690	NM_000044.3	488	cAg/cGg																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151917717	151917717	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			71	19	80	0	ENST00000262189.6:c.3603delA	p.Lys1201AsnfsTer4	p.K1201Nfs*4	ENST00000262189	NM_170606.2	1201	aaA/aa																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42798220	42798222	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	38	284	0	ENST00000575354.2:c.4178_4180del	p.Lys1393del	p.K1393del	ENST00000575354	NM_015125.3	1392	AAG/-																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72831385	72831386	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGTTGTTGC			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	39	321	0	ENST00000268489.5:c.5195_5196insGCAACAACA	p.Gln1739_Gln1741dup	p.Q1739_Q1741dup	ENST00000268489	NM_006885.3	1739	caa/caGCAACAACAa																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	58	197	0	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762108866		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	48	248	1	ENST00000268489.5:c.10215dup	p.Gly3406ArgfsTer25	p.G3406Rfs*25	ENST00000268489	NM_006885.3	3405	-/C																																													NEWRECORD																																		
ARAF	369	MSKCC	GRCh37	X	47424734	47424734	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	106	229	0	ENST00000377045.4:c.547delC	p.Gln183ArgfsTer109	p.Q183Rfs*109	ENST00000377045	NM_001654.4	181	aCc/ac																																													NEWRECORD																																		
IDH1	3417	MSKCC	GRCh37	2	209116263	209116263	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	135	305	0	ENST00000345146.2:c.13delA	p.Ile5SerfsTer7	p.I5Sfs*7	ENST00000345146	NM_005896.2	5	Atc/tc																																													NEWRECORD																																		
INPP4A	3631	MSKCC	GRCh37	2	99172203	99172203	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	83	344	0	ENST00000074304.5:c.1769del	p.Cys590LeufsTer21	p.C590Lfs*21	ENST00000074304	NM_001134224.1	590	tGt/tt																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42798164	42798164	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	61	339	0	ENST00000575354.2:c.4122delC	p.Thr1375ProfsTer40	p.T1375Pfs*40	ENST00000575354	NM_015125.3	1373	tCc/tc																																													NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	48	275	4	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	106	225	4	ENST00000342505.4:c.2580dupA	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	109	299	7	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																													NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	348211	348211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	46	116	0	ENST00000262320.3:c.1295del	p.Pro432GlnfsTer48	p.P432Qfs*48	ENST00000262320	NM_003502.3	432	cCa/ca																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135781141	135781141	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	152	678	2	ENST00000298552.3:c.1824del	p.Phe608LeufsTer21	p.F608Lfs*21	ENST00000298552	NM_001162426.1	608	ttT/tt																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	78	162	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																													NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	198	611	3	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135785964	135785964	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs118203506		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	36	139	2	ENST00000298552.3:c.1257del	p.Arg420GlyfsTer20	p.R420Gfs*20	ENST00000298552	NM_001162426.1	419	ccC/cc																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120483185	120483185	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	62	127	0	ENST00000256646.2:c.3176del	p.Asn1059ThrfsTer6	p.N1059Tfs*6	ENST00000256646	NM_024408.3	1059	aAc/ac																																													NEWRECORD																																		
TNFAIP3	7128	MSKCC	GRCh37	6	138202374	138202374	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	25	147	0	ENST00000237289.4:c.2295del	p.Ala766ProfsTer50	p.A766Pfs*50	ENST00000237289	NM_001270507.1	764	gCc/gc																																													NEWRECORD																																		
PARK2	5071	MSKCC	GRCh37	6	161781121	161781122	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	28	226	0	ENST00000366898.1:c.1283dup	p.Asn428LysfsTer141	p.N428Kfs*141	ENST00000366898	NM_004562.2	428	aat/aaAt																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	92	338	1	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39934301	39934302	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	125	201	1	ENST00000378444.4:c.297_298del	p.Lys100ArgfsTer85	p.K100Rfs*85	ENST00000378444	NM_001123385.1	99	gaGAaa/gaaa																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27099906	27099906	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140125151		P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	226	556	0	ENST00000324856.7:c.3785G>A	p.Arg1262His	p.R1262H	ENST00000324856	NM_006015.4	1262	cGt/cAt																																													NEWRECORD																																		
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	341	594	0	ENST00000262741.5:c.883delA	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65306942	65306942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	160	375	0	ENST00000342505.4:c.2635C>T	p.Arg879Cys	p.R879C	ENST00000342505	NM_002227.2	879	Cgt/Tgt																																													NEWRECORD																																		
CSDE1	7812	MSKCC	GRCh37	1	115269621	115269622	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	295	878	0	ENST00000438362.2:c.1584_1585del	p.Pro529SerfsTer5	p.P529Sfs*5	ENST00000438362	NM_001242891.1	528	tcTCct/tcct																																													NEWRECORD																																		
SHOC2	8036	MSKCC	GRCh37	10	112724269	112724269	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	302	632	0	ENST00000369452.4:c.153A>C	p.Lys51Asn	p.K51N	ENST00000369452	NM_007373.3	51	aaA/aaC																																													NEWRECORD																																		
MRE11A	4361	MSKCC	GRCh37	11	94189472	94189473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	195	462	0	ENST00000323929.3:c.1532dup	p.Asn511LysfsTer3	p.N511Kfs*3	ENST00000323929	NM_005591.3	511	aat/aaAt																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18644452	18644452	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	216	483	0	ENST00000266497.5:c.2630C>A	p.Pro877His	p.P877H	ENST00000266497		877	cCt/cAt																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	255	691	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115117323	115117323	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	168	348	0	ENST00000257566.3:c.851A>G	p.Tyr284Cys	p.Y284C	ENST00000257566	NM_016569.3	284	tAc/tGc																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103519115	103519115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	242	487	0	ENST00000355739.4:c.2453C>T	p.Ala818Val	p.A818V	ENST00000355739	NM_000123.3	818	gCg/gTg																																													NEWRECORD																																		
KNSTRN	90417	MSKCC	GRCh37	15	40678619	40678619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	205	665	2	ENST00000249776.8:c.361G>A	p.Asp121Asn	p.D121N	ENST00000249776	NM_033286.3	121	Gat/Aat																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	162	413	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	179	411	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																													NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91293075	91293075	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	226	494	0	ENST00000355112.3:c.582del	p.Phe194LeufsTer11	p.F194Lfs*11	ENST00000355112	NM_000057.2	193	Ttt/tt																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2127688	2127688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	220	585	0	ENST00000219476.3:c.2927G>A	p.Arg976Gln	p.R976Q	ENST00000219476	NM_000548.3	976	cGg/cAg																																													NEWRECORD																																		
SOCS1	8651	MSKCC	GRCh37	16	11349070	11349070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	154	421	1	ENST00000332029.2:c.266C>T	p.Ala89Val	p.A89V	ENST00000332029	NM_003745.1	89	gCg/gTg																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	416	567	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
PRKAR1A	5573	MSKCC	GRCh37	17	66526531	66526531	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	202	440	0	ENST00000358598.2:c.1087T>G	p.Ser363Ala	p.S363A	ENST00000358598	NM_212471.2	363	Tca/Gca																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	134	334	1	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604785	48604785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	165	493	0	ENST00000342988.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000342988	NM_005359.5	536	cTa/cCa																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5244196	5244196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	193	547	2	ENST00000357368.4:c.1286C>T	p.Ala429Val	p.A429V	ENST00000357368	NM_002850.3	429	gCg/gTg																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7267448	7267448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	225	464	0	ENST00000302850.5:c.560C>T	p.Pro187Leu	p.P187L	ENST00000302850	NM_000208.2	187	cCg/cTg																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11097228	11097228	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201600949		P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	258	618	2	ENST00000344626.4:c.719C>T	p.Pro240Leu	p.P240L	ENST00000344626	NM_003072.3	240	cCg/cTg																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15284889	15284889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	286	747	0	ENST00000263388.2:c.4726G>A	p.Glu1576Lys	p.E1576K	ENST00000263388	NM_000435.2	1576	Gag/Aag																																													NEWRECORD																																		
CCNE1	898	MSKCC	GRCh37	19	30314680	30314680	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141578348		P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	158	511	0	ENST00000262643.3:c.1229C>T	p.Ala410Val	p.A410V	ENST00000262643	NM_001238.2	410	gCg/gTg																																													NEWRECORD																																		
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	269	765	1	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																													NEWRECORD																																		
ERF	2077	MSKCC	GRCh37	19	42753385	42753385	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	223	682	2	ENST00000222329.4:c.879delG	p.Ser295AlafsTer16	p.S295Afs*16	ENST00000222329	NM_006494.2	293	ggG/gg																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50906369	50906369	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	244	649	0	ENST00000440232.2:c.1030T>C	p.Trp344Arg	p.W344R	ENST00000440232	NM_002691.3	344	Tgg/Cgg																																													NEWRECORD																																		
SOS1	6654	MSKCC	GRCh37	2	39250095	39250095	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	230	562	0	ENST00000402219.2:c.1474G>T	p.Glu492Ter	p.E492*	ENST00000402219	NM_005633.3	492	Gaa/Taa																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	398	499	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202141631	202141631	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	226	526	0	ENST00000358485.4:c.919del	p.Arg307GlyfsTer23	p.R307Gfs*23	ENST00000358485	NM_001080125.1	307	Cgg/gg																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225362470	225362470	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	118	312	0	ENST00000264414.4:c.1707G>T	p.Lys569Asn	p.K569N	ENST00000264414	NM_003590.4	569	aaG/aaT																																													NEWRECORD																																		
BCL2L1	598	MSKCC	GRCh37	20	30309535	30309535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	291	649	0	ENST00000307677.4:c.487G>T	p.Val163Leu	p.V163L	ENST00000307677	NM_138578.1	163	Gtg/Ttg																																													NEWRECORD																																		
SRC	6714	MSKCC	GRCh37	20	36030877	36030877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	187	535	0	ENST00000358208.4:c.1156G>A	p.Val386Ile	p.V386I	ENST00000358208		386	Gtc/Atc																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40899050	40899050	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	144	487	0	ENST00000373198.4:c.2220C>G	p.Cys740Trp	p.C740W	ENST00000373198	NM_133170.3	740	tgC/tgG																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	20	446	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																													NEWRECORD																																		
ERG	2078	MSKCC	GRCh37	21	39764347	39764347	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	235	584	0	ENST00000288319.7:c.765del	p.Arg256GlyfsTer35	p.R256Gfs*35	ENST00000288319	NM_182918.3	255	ccC/cc																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52682360	52682360	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	144	268	0	ENST00000394830.3:c.813G>T	p.Lys271Asn	p.K271N	ENST00000394830	NM_018313.4	271	aaG/aaT																																													NEWRECORD																																		
FOXL2	668	MSKCC	GRCh37	3	138665215	138665215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	354	864	1	ENST00000330315.3:c.350G>A	p.Arg117His	p.R117H	ENST00000330315	NM_023067.3	117	cGc/cAc																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142188303	142188304	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	192	527	0	ENST00000350721.4:c.6427dup	p.Ser2143PhefsTer13	p.S2143Ffs*13	ENST00000350721	NM_001184.3	2143	tca/tTca																																													NEWRECORD																																		
BCL6	604	MSKCC	GRCh37	3	187447297	187447297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	193	571	0	ENST00000232014.4:c.896C>T	p.Ala299Val	p.A299V	ENST00000232014	NM_001130845.1	299	gCc/gTc																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187521103	187521103	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs183364307		P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	149	384	0	ENST00000441802.2:c.12052G>A	p.Ala4018Thr	p.A4018T	ENST00000441802	NM_005245.3	4018	Gcc/Acc																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176638776	176638776	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	248	612	0	ENST00000439151.2:c.3376G>C	p.Gly1126Arg	p.G1126R	ENST00000439151	NM_022455.4	1126	Gga/Cga																																													NEWRECORD																																		
HLA-A	3105	MSKCC	GRCh37	6	29911051	29911051	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	250	541	0	ENST00000376809.5:c.350A>G	p.His117Arg	p.H117R	ENST00000376809	NM_002116.7	117	cAc/cGc																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117677848	117677848	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	152	389	2	ENST00000368508.3:c.4085C>A	p.Ala1362Glu	p.A1362E	ENST00000368508	NM_002944.2	1362	gCa/gAa																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	150005002	150005002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	138	340	0	ENST00000253339.5:c.1223C>T	p.Ser408Phe	p.S408F	ENST00000253339		408	tCt/tTt																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	229	514	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	290	850	4	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																													NEWRECORD																																		
AGO2	27161	MSKCC	GRCh37	8	141559350	141559350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	256	511	0	ENST00000220592.5:c.1451C>T	p.Pro484Leu	p.P484L	ENST00000220592	NM_012154.3	484	cCc/cTc																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	146	397	0	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																														NEWRECORD																																		
MAPKAP1	79109	MSKCC	GRCh37	9	128420047	128420047	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	244	649	4	ENST00000265960.3:c.381del	p.Lys127AsnfsTer20	p.K127Nfs*20	ENST00000265960	NM_001006617.1	127	aaA/aa																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139404341	139404341	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35962301		P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	283	692	0	ENST00000277541.6:c.2813G>A	p.Arg938Gln	p.R938Q	ENST00000277541	NM_017617.3	938	cGg/cAg																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47045514	47045514	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	232	685	0	ENST00000329236.7:c.2250del	p.Glu751SerfsTer18	p.E751Sfs*18	ENST00000329236	NM_001204466.1	749	atC/at																																													NEWRECORD																																		
BTK	695	MSKCC	GRCh37	X	100617180	100617180	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	254	606	0	ENST00000308731.7:c.569del	p.Pro190GlnfsTer9	p.P190Qfs*9	ENST00000308731	NM_000061.2	190	cCa/ca																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	132	559	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0004113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	21	471	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108186775	108186776	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCTAGTAACATATGA			P-0004113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	74	682	0	ENST00000278616.4:c.6136_6151dup	p.Leu2051ProfsTer5	p.L2051Pfs*5	ENST00000278616	NM_000051.3	2045	gcc/gCCCTAGTAACATATGAcc																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0012683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	105	406	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	30143035	30143035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1023	118	506	2	ENST00000389048.3:c.491G>A	p.Gly164Glu	p.G164E	ENST00000389048	NM_004304.4	164	gGg/gAg																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98220303	98220303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	110	316	1	ENST00000331920.6:c.3160G>A	p.Gly1054Arg	p.G1054R	ENST00000331920	NM_000264.3	1054	Ggg/Agg																																													NEWRECORD																																		
ETV6	2120	MSKCC	GRCh37	12	12037475	12037475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	154	318	0	ENST00000396373.4:c.1106G>A	p.Arg369Gln	p.R369Q	ENST00000396373	NM_001987.4	369	cGg/cAg																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37883138	37883138	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3049	10073	552	2	ENST00000269571.5:c.3041T>A	p.Met1014Lys	p.M1014K	ENST00000269571		1014	aTg/aAg																																													NEWRECORD																																		
CHEK2	11200	MSKCC	GRCh37	22	29083947	29083947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	35	87	0	ENST00000328354.6:c.1570G>A	p.Glu524Lys	p.E524K	ENST00000328354	NM_007194.3	524	Gaa/Aaa																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41545115	41545115	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1286	221	511	0	ENST00000263253.7:c.2315C>A	p.Ser772Ter	p.S772*	ENST00000263253	NM_001429.3	772	tCa/tAa																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70345893	70345893	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	193	202	0	ENST00000374080.3:c.2430G>C	p.Glu810Asp	p.E810D	ENST00000374080		810	gaG/gaC																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7576923	7576955	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAA	AGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAA	-			P-0012683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	263	403	0	ENST00000269305.4:c.920-29_923del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																														NEWRECORD																																		
GSK3B	2932	MSKCC	GRCh37	3	119562123	119562124	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	205	457	0	ENST00000316626.5:c.1212dup	p.Thr405HisfsTer10	p.T405Hfs*10	ENST00000316626		404	-/C																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242444	55242445	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAAATTCCCGTCGCTATC			P-0012745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	463	344	0	ENST00000275493.2:c.2217_2234dup	p.Ile740_Lys745dup	p.I740_K745dup	ENST00000275493	NM_005228.3	740	-/AAAATTCCCGTCGCTATC																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0010665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	20	716	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0010665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	17	361	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81386537	81386537	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	23	654	0	ENST00000222390.5:c.450G>T	p.Gln150His	p.Q150H	ENST00000222390	NM_000601.4	150	caG/caT																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106861	27106861	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	24	380	0	ENST00000324856.7:c.6472C>T	p.Arg2158Ter	p.R2158*	ENST00000324856	NM_006015.4	2158	Cga/Tga																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152265479	152265479	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766779326		P-0010665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	18	452	0	ENST00000206249.3:c.932C>T	p.Thr311Met	p.T311M	ENST00000206249	NM_000125.3	311	aCg/aTg																																													NEWRECORD																																		
RAF1	5894	MSKCC	GRCh37	3	12653513	12653513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	22	593	0	ENST00000251849.4:c.256C>T	p.Leu86Phe	p.L86F	ENST00000251849	NM_002880.3	86	Ctc/Ttc																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114710517	114710517	+	start_lost	Translation_Start_Site	SNP	T	T	G			P-0010665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	84	734	0	ENST00000543371.1:c.2T>G	p.Met1?	p.M1?	ENST00000543371	NM_001198531.1	1	aTg/aGg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173574	112173575	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	15	456	0	ENST00000257430.4:c.2284dup	p.Ala762GlyfsTer13	p.A762Gfs*13	ENST00000257430	NM_000038.5	761	-/G																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604762	48604763	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	38	584	0	ENST00000342988.3:c.1586dup	p.Leu529PhefsTer48	p.L529Ffs*48	ENST00000342988	NM_005359.5	528	-/T																																													NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0010509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	137	384	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	71	367	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	70	253	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	43	322	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1264568	1264568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	48	440	0	ENST00000310581.5:c.2794G>A	p.Gly932Ser	p.G932S	ENST00000310581	NM_198253.2	932	Ggc/Agc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174840	112174840	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0010509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	96	438	0	ENST00000257430.4:c.3549T>A	p.Tyr1183Ter	p.Y1183*	ENST00000257430	NM_000038.5	1183	taT/taA																																													NEWRECORD																																		
SMARCD1	6602	MSKCC	GRCh37	12	50480588	50480588	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	159	429	0	ENST00000394963.4:c.458T>G	p.Phe153Cys	p.F153C	ENST00000394963	NM_003076.4	153	tTt/tGt																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70117960	70117960	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	86	125	0	ENST00000245479.2:c.428G>A	p.Trp143Ter	p.W143*	ENST00000245479	NM_000346.3	143	tGg/tAg																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11319341	11319341	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	232	611	0	ENST00000361445.4:c.126G>T	p.Lys42Asn	p.K42N	ENST00000361445	NM_004958.3	42	aaG/aaT																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16248743	16248743	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	39	405	1	ENST00000375759.3:c.1750-1G>T		p.X584_splice	ENST00000375759	NM_015001.2	584																																														NEWRECORD																																		
PARP1	142	MSKCC	GRCh37	1	226578282	226578282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	220	633	2	ENST00000366794.5:c.446C>A	p.Pro149Gln	p.P149Q	ENST00000366794	NM_001618.3	149	cCa/cAa																																													NEWRECORD																																		
XPO1	7514	MSKCC	GRCh37	2	61724082	61724082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	59	612	0	ENST00000401558.2:c.820G>A	p.Val274Met	p.V274M	ENST00000401558	NM_003400.3	274	Gtg/Atg																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198257146	198257146	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	69	554	0	ENST00000335508.6:c.3796T>A	p.Trp1266Arg	p.W1266R	ENST00000335508	NM_012433.2	1266	Tgg/Agg																																													NEWRECORD																																		
CTLA4	1493	MSKCC	GRCh37	2	204735609	204735609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	120	330	0	ENST00000302823.3:c.410C>T	p.Pro137Leu	p.P137L	ENST00000302823	NM_005214.4	137	cCg/cTg																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227662389	227662389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	136	359	1	ENST00000305123.5:c.1066G>A	p.Ala356Thr	p.A356T	ENST00000305123	NM_005544.2	356	Gcc/Acc																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47127716	47127716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	294	514	0	ENST00000409792.3:c.5366G>A	p.Gly1789Asp	p.G1789D	ENST00000409792	NM_014159.6	1789	gGc/gAc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	52	221	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
EIF4A2	1974	MSKCC	GRCh37	3	186504306	186504306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	146	275	0	ENST00000323963.5:c.643G>A	p.Ala215Thr	p.A215T	ENST00000323963		215	Gcc/Acc																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	255	554	2	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1264632	1264632	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	224	779	0	ENST00000310581.5:c.2730A>C	p.Glu910Asp	p.E910D	ENST00000310581	NM_198253.2	910	gaA/gaC																																													NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35876449	35876449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2229232		P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	183	524	0	ENST00000303115.3:c.1241C>T	p.Thr414Met	p.T414M	ENST00000303115	NM_002185.3	414	aCg/aTg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	82	239	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	206	416	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151874710	151874710	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	246	554	0	ENST00000262189.6:c.7828C>T	p.Arg2610Ter	p.R2610*	ENST00000262189	NM_170606.2	2610	Cga/Tga																																													NEWRECORD																																		
GNAQ	2776	MSKCC	GRCh37	9	80409425	80409425	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	136	260	0	ENST00000286548.4:c.689T>C	p.Val230Ala	p.V230A	ENST00000286548	NM_002072.3	230	gTa/gCa																																													NEWRECORD																																		
SYK	6850	MSKCC	GRCh37	9	93606313	93606313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	195	586	1	ENST00000375746.1:c.133C>T	p.Arg45Cys	p.R45C	ENST00000375746	NM_001174167.1	45	Cgc/Tgc																																													NEWRECORD																																		
RAD52	5893	MSKCC	GRCh37	12	1040429	1040429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	242	670	0	ENST00000358495.3:c.143G>A	p.Gly48Asp	p.G48D	ENST00000358495	NM_134424.2	48	gGc/gAc																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133202828	133202828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	47	601	1	ENST00000320574.5:c.6406G>A	p.Gly2136Ser	p.G2136S	ENST00000320574	NM_006231.2	2136	Ggc/Agc																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	29001303	29001303	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201407326		P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	263	534	0	ENST00000282397.4:c.1429G>A	p.Glu477Lys	p.E477K	ENST00000282397	NM_002019.4	477	Gaa/Aaa																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007878	45007878	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	224	408	0	ENST00000558401.1:c.325C>T	p.Gln109Ter	p.Q109*	ENST00000558401	NM_004048.2	109	Cag/Tag																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2130352	2130352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	154	554	1	ENST00000219476.3:c.3584C>T	p.Ala1195Val	p.A1195V	ENST00000219476	NM_000548.3	1195	gCg/gTg																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2135300	2135300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	222	653	0	ENST00000219476.3:c.4639G>A	p.Val1547Ile	p.V1547I	ENST00000219476	NM_000548.3	1547	Gtc/Atc																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9858029	9858029	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	260	718	0	ENST00000330684.3:c.3372G>T	p.Lys1124Asn	p.K1124N	ENST00000330684	NM_001134407.1	1124	aaG/aaT																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67660469	67660469	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	142	500	0	ENST00000264010.4:c.1369C>T	p.Arg457Ter	p.R457*	ENST00000264010	NM_006565.3	457	Cga/Tga																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81972439	81972439	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	393	1025	1	ENST00000359376.3:c.3232C>T	p.Arg1078Ter	p.R1078*	ENST00000359376	NM_002661.3	1078	Cga/Tga																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89349604	89349604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	444	1110	0	ENST00000301030.4:c.3346G>A	p.Ala1116Thr	p.A1116T	ENST00000301030	NM_001256183.1	1116	Gca/Aca																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29677273	29677273	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs143474365		P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	68	578	0	ENST00000358273.4:c.7394A>G	p.Asp2465Gly	p.D2465G	ENST00000358273	NM_001042492.2	2465	gAt/gGt																																													NEWRECORD																																		
HOXB13	10481	MSKCC	GRCh37	17	46805453	46805453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	173	896	0	ENST00000290295.7:c.503G>A	p.Ser168Asn	p.S168N	ENST00000290295	NM_006361.5	168	aGt/aAt																																													NEWRECORD																																		
GNA11	2767	MSKCC	GRCh37	19	3115006	3115006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	184	617	1	ENST00000078429.4:c.541C>T	p.Arg181Trp	p.R181W	ENST00000078429	NM_002067.2	181	Cgg/Tgg																																													NEWRECORD																																		
GNA11	2767	MSKCC	GRCh37	19	3119286	3119286	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	245	749	0	ENST00000078429.4:c.818T>G	p.Leu273Arg	p.L273R	ENST00000078429	NM_002067.2	273	cTc/cGc																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17955106	17955106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	186	530	0	ENST00000458235.1:c.121C>A	p.Leu41Ile	p.L41I	ENST00000458235	NM_000215.3	41	Cta/Ata																																													NEWRECORD																																		
CD79A	973	MSKCC	GRCh37	19	42383059	42383059	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	166	543	1	ENST00000221972.3:c.80-1G>T		p.X27_splice	ENST00000221972	NM_021601.3	27																																														NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40733279	40733279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201275244		P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	127	410	0	ENST00000373198.4:c.3527G>A	p.Arg1176His	p.R1176H	ENST00000373198	NM_133170.3	1176	cGt/cAt																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123224563	123224563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	380	395	0	ENST00000218089.9:c.3416T>C	p.Met1139Thr	p.M1139T	ENST00000218089	NM_001042749.1	1139	aTg/aCg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139390736	139390736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	237	761	0	ENST00000277541.6:c.7455del	p.Ser2486ArgfsTer103	p.S2486Rfs*103	ENST00000277541	NM_017617.3	2485	ccC/cc																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89811410	89811410	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	44	664	0	ENST00000389301.3:c.3583del	p.Arg1195GlyfsTer52	p.R1195Gfs*52	ENST00000389301	NM_000135.2	1195	Cgg/gg																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47098688	47098694	+	frameshift_variant	Frame_Shift_Del	DEL	GGTCCAT	GGTCCAT	-			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	269	706	0	ENST00000409792.3:c.6580_6586del	p.Met2194GlnfsTer52	p.M2194Qfs*52	ENST00000409792	NM_014159.6	2194	ATGGACCca/ca																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106155700	106155700	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	184	508	0	ENST00000380013.4:c.605delA	p.Asn202ThrfsTer5	p.N202Tfs*5	ENST00000380013	NM_001127208.2	201	Aaa/aa																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23646575	23646576	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	137	311	0	ENST00000261584.4:c.1291_1292del	p.His432PhefsTer9	p.H432Ffs*9	ENST00000261584	NM_024675.3	431	AGt/t																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70117594	70117594	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	179	510	0	ENST00000245479.2:c.66del	p.Ser23AlafsTer38	p.S23Afs*38	ENST00000245479	NM_000346.3	21	gCc/gc																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	271	575	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																													NEWRECORD																																		
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	276	775	2	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	283	718	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																													NEWRECORD																																		
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	181	548	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	304	925	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157099639	157099639	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			68	15	36	0	ENST00000346085.5:c.580del	p.Glu194SerfsTer72	p.E194Sfs*72	ENST00000346085	NM_020732.3	192	atG/at																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106508725	106508725	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	179	478	0	ENST00000359195.3:c.723del	p.Gly242AlafsTer17	p.G242Afs*17	ENST00000359195	NM_002649.2	240	aCc/ac																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52623187	52623187	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			996	71	680	0	ENST00000394830.3:c.2864del	p.Asn955ThrfsTer53	p.N955Tfs*53	ENST00000394830	NM_018313.4	955	aAc/ac																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0006810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	336	381	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	265	417	0	ENST00000269305.4:c.577C>G	p.His193Asp	p.H193D	ENST00000269305	NM_001126112.2	193	Cat/Gat																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88679811	88679811	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	225	414	0	ENST00000360948.2:c.652A>C	p.Asn218His	p.N218H	ENST00000360948	NM_001012338.2	218	Aac/Cac																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9934931	9934931	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	103	286	0	ENST00000330684.3:c.1359G>C	p.Lys453Asn	p.K453N	ENST00000330684	NM_001134407.1	453	aaG/aaC																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174357	112174358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	196	271	0	ENST00000257430.4:c.3067dup	p.Thr1023AsnfsTer6	p.T1023Nfs*6	ENST00000257430	NM_000038.5	1022	-/A																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65325840	65325840	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	137	270	0	ENST00000342505.4:c.1282G>C	p.Ala428Pro	p.A428P	ENST00000342505	NM_002227.2	428	Gcc/Ccc																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76939309	76939309	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	142	402	0	ENST00000373344.5:c.1439C>A	p.Thr480Lys	p.T480K	ENST00000373344	NM_000489.3	480	aCa/aAa																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123210320	123210320	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0004835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	55	427	0	ENST00000218089.9:c.2672A>G	p.Lys891Arg	p.K891R	ENST00000218089	NM_001042749.1	891	aAg/aGg																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115900	8115901	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	277	284	0	ENST00000346208.3:c.1247dup	p.Thr417AspfsTer90	p.T417Dfs*90	ENST00000346208		416	ctg/cTtg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0005801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	213	575	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023559	27023560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	44	485	0	ENST00000324856.7:c.671dup	p.Pro225AlafsTer175	p.P225Afs*175	ENST00000324856	NM_006015.4	222	tac/taCc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0005801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	186	503	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0005801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	169	415	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56184065	56184065	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	187	385	0	ENST00000399503.3:c.4270C>T	p.Gln1424Ter	p.Q1424*	ENST00000399503	NM_005921.1	1424	Caa/Taa																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95562578	95562578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	75	439	0	ENST00000343455.3:c.4679C>T	p.Ala1560Val	p.A1560V	ENST00000343455	NM_177438.2	1560	gCg/gTg																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67477087	67477087	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	501	646	0	ENST00000327367.4:c.894C>A	p.Tyr298Ter	p.Y298*	ENST00000327367	NM_005902.3	298	taC/taA																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45374929	45374929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	238	529	0	ENST00000262160.6:c.914C>T	p.Pro305Leu	p.P305L	ENST00000262160	NM_005901.5	305	cCa/cTa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0005879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	571	672	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47162516	47162516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	117	282	0	ENST00000409792.3:c.3610A>G	p.Ile1204Val	p.I1204V	ENST00000409792	NM_014159.6	1204	Att/Gtt																																													NEWRECORD																																		
NPM1	4869	MSKCC	GRCh37	5	170834766	170834766	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	135	428	0	ENST00000296930.5:c.834G>C	p.Met278Ile	p.M278I	ENST00000296930	NM_002520.6	278	atG/atC																																													NEWRECORD																																		
JAK2	3717	MSKCC	GRCh37	9	5080375	5080375	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	62	231	0	ENST00000381652.3:c.2278C>G	p.Gln760Glu	p.Q760E	ENST00000381652	NM_004972.3	760	Caa/Gaa																																													NEWRECORD																																		
PRKAR1A	5573	MSKCC	GRCh37	17	66518915	66518915	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	194	336	0	ENST00000358598.2:c.196C>T	p.Gln66Ter	p.Q66*	ENST00000358598	NM_212471.2	66	Cag/Tag																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49444193	49444194	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	194	603	0	ENST00000301067.7:c.3177dup	p.Lys1060GlufsTer8	p.K1060Efs*8	ENST00000301067	NM_003482.3	1059	-/G																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187557246	187557246	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	154	442	0	ENST00000441802.2:c.4116del	p.Val1373LeufsTer4	p.V1373Lfs*4	ENST00000441802	NM_005245.3	1372	ccC/cc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	43	224	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0004251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	30	265	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	15	158	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579409	7579410	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0004251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	30	118	0	ENST00000269305.4:c.277_278delCT	p.Leu93ValfsTer55	p.L93Vfs*55	ENST00000269305	NM_001126112.2	93	CTg/g																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173562	112173563	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	34	247	0	ENST00000257430.4:c.2271_2272insT	p.Lys758Ter	p.K758*	ENST00000257430	NM_000038.5	757	-/T																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0001394-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			575	129	287	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174835	112174835	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0001394-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			618	80	341	0	ENST00000257430.4:c.3544A>T	p.Lys1182Ter	p.K1182*	ENST00000257430	NM_000038.5	1182	Aaa/Taa																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56152503	56152503	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001394-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			814	80	371	0	ENST00000399503.3:c.559G>T	p.Glu187Ter	p.E187*	ENST00000399503	NM_005921.1	187	Gag/Tag																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108225552	108225552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001394-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			743	62	333	0	ENST00000278616.4:c.8801C>A	p.Thr2934Asn	p.T2934N	ENST00000278616	NM_000051.3	2934	aCc/aAc																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	12028660	12028660	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001394-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			756	88	421	0	ENST00000353533.5:c.863C>G	p.Ser288Cys	p.S288C	ENST00000353533	NM_003010.3	288	tCt/tGt																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41245021	41245021	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001394-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			577	56	404	0	ENST00000357654.3:c.2527A>G	p.Thr843Ala	p.T843A	ENST00000357654	NM_007294.3	843	Aca/Gca																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70117627	70117628	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0001394-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			483	81	302	1	ENST00000245479.2:c.96dup	p.Ser33LeufsTer219	p.S33Lfs*219	ENST00000245479	NM_000346.3	32	ggc/ggCc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112176186	112176187	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TACACCG			P-0001394-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			663	80	369	0	ENST00000257430.4:c.4896_4902dup	p.Gly1635TyrfsTer5	p.G1635Yfs*5	ENST00000257430	NM_000038.5	1632	ttt/ttTACACCGt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	19	162	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29606715	29606715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	18	231	1	ENST00000389048.3:c.1165C>T	p.Leu389Phe	p.L389F	ENST00000389048	NM_004304.4	389	Ctc/Ttc																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16024518	16024518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			730	39	438	0	ENST00000268712.3:c.1700C>T	p.Ala567Val	p.A567V	ENST00000268712	NM_006311.3	567	gCc/gTc																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249013	55249014	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACCCCC			P-0000670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	43	236	0	ENST00000275493.2:c.2314_2319dupCCCCAC	p.Pro772_His773dup	p.P772_H773dup	ENST00000275493	NM_005228.3	772	aac/aACCCCCac																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974712	21974720	+	inframe_deletion	In_Frame_Del	DEL	TGGGCAGCG	TGGGCAGCG	-			P-0000670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	17	219	0	ENST00000304494.5:c.107_115del	p.Ala36_Asn39delinsAsp	p.A36_N39delinsD	ENST00000304494	NM_000077.4	36	gCGCTGCCCAac/gac																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37618689	37618690	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	51	448	0	ENST00000447079.4:c.366dup	p.Leu123ThrfsTer4	p.L123Tfs*4	ENST00000447079	NM_015083.1	122	tta/ttAa																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	43	306	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108200961	108200961	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782310		P-0008572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	27	221	0	ENST00000278616.4:c.7328G>A	p.Arg2443Gln	p.R2443Q	ENST00000278616	NM_000051.3	2443	cGa/cAa																																													NEWRECORD																																		
FOXL2	668	MSKCC	GRCh37	3	138664729	138664729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	29	94	0	ENST00000330315.3:c.836G>A	p.Gly279Asp	p.G279D	ENST00000330315	NM_023067.3	279	gGc/gAc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112176936	112176936	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs34157245		P-0008572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	67	314	0	ENST00000257430.4:c.5645G>C	p.Arg1882Thr	p.R1882T	ENST00000257430	NM_000038.5	1882	aGa/aCa																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49438712	49438712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	84	320	2	ENST00000301067.7:c.4778C>T	p.Thr1593Ile	p.T1593I	ENST00000301067	NM_003482.3	1593	aCa/aTa																																													NEWRECORD																																		
RAD51C	5889	MSKCC	GRCh37	17	56801442	56801442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	67	443	0	ENST00000337432.4:c.946C>T	p.His316Tyr	p.H316Y	ENST00000337432	NM_058216.2	316	Cat/Tat																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29661996	29661997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	53	310	2	ENST00000358273.4:c.5958dup	p.Gln1987ThrfsTer22	p.Q1987Tfs*22	ENST00000358273	NM_001042492.2	1985	gaa/gAaa																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68867227	68867245	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCTTATGATTCTCTGCT	CGCCTTATGATTCTCTGCT	-			P-0008572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	127	262	0	ENST00000261769.5:c.2476_2494delCCTTATGATTCTCTGCTCG	p.Pro826CysfsTer14	p.P826Cfs*14	ENST00000261769	NM_004360.3	825	cCGCCTTATGATTCTCTGCTc/cc																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72829809	72829809	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1140	362	1065	0	ENST00000268489.5:c.6772delC	p.Gln2258ArgfsTer22	p.Q2258Rfs*22	ENST00000268489	NM_006885.3	2258	Cag/ag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7572931	7572932	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004597-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			471	174	760	0	ENST00000269305.4:c.1177dup	p.Asp393GlyfsTer78	p.D393Gfs*78	ENST00000269305	NM_001126112.2	393	gac/gGac																																													NEWRECORD																																		
PNRC1	10957	MSKCC	GRCh37	6	89791107	89791107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004597-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			69	38	65	0	ENST00000336032.3:c.494C>T	p.Ala165Val	p.A165V	ENST00000336032	NM_006813.2	165	gCc/gTc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004597-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			593	24	661	1	ENST00000269305.4:c.848G>A	p.Arg283His	p.R283H	ENST00000269305	NM_001126112.2	283	cGc/cAc																																													NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0002622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	109	285	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151917707	151917707	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0002622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			147	15	115	0	ENST00000262189.6:c.3613A>T	p.Lys1205Ter	p.K1205*	ENST00000262189	NM_170606.2	1205	Aaa/Taa																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67070594	67070594	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			569	86	490	0	ENST00000412916.2:c.218G>A	p.Trp73Ter	p.W73*	ENST00000412916		73	tGg/tAg																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29654689	29654690	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			652	82	387	0	ENST00000358273.4:c.5443dupC	p.Gln1815ProfsTer4	p.Q1815Pfs*4	ENST00000358273	NM_001042492.2	1814	cac/caCc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	499	510	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11097624	11097625	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1165714406		P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	671	946	3	ENST00000344626.4:c.810dup	p.Gly271ArgfsTer16	p.G271Rfs*16	ENST00000344626	NM_003072.3	268	-/C																																													NEWRECORD																																		
MYCN	4613	MSKCC	GRCh37	2	16082339	16082339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	307	692	0	ENST00000281043.3:c.153G>T	p.Lys51Asn	p.K51N	ENST00000281043	NM_005378.4	51	aaG/aaT																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66356133	66356133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	288	629	0	ENST00000273854.3:c.1364G>T	p.Arg455Leu	p.R455L	ENST00000273854	NM_004439.5	455	cGg/cTg																																													NEWRECORD																																		
FAM175A	84142	MSKCC	GRCh37	4	84388683	84388683	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	196	552	0	ENST00000321945.7:c.605T>G	p.Phe202Cys	p.F202C	ENST00000321945	NM_139076.2	202	tTt/tGt																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106524634	106524634	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	239	480	1	ENST00000359195.3:c.2795G>T	p.Cys932Phe	p.C932F	ENST00000359195	NM_002649.2	932	tGt/tTt																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98224163	98224163	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	252	549	2	ENST00000331920.6:c.2678G>T	p.Arg893Leu	p.R893L	ENST00000331920	NM_000264.3	893	cGc/cTc																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70332729	70332729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	223	532	1	ENST00000373644.4:c.634G>A	p.Glu212Lys	p.E212K	ENST00000373644	NM_030625.2	212	Gag/Aag																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9934917	9934917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	281	606	0	ENST00000330684.3:c.1373G>T	p.Gly458Val	p.G458V	ENST00000330684	NM_001134407.1	458	gGg/gTg																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89805351	89805351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	319	662	0	ENST00000389301.3:c.4199G>T	p.Arg1400Leu	p.R1400L	ENST00000389301	NM_000135.2	1400	cGt/cTt																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1222985	1222985	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	313	346	0	ENST00000326873.7:c.922T>G	p.Trp308Gly	p.W308G	ENST00000326873	NM_000455.4	308	Tgg/Ggg																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2214594	2214594	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	412	507	0	ENST00000398665.3:c.1922A>T	p.Gln641Leu	p.Q641L	ENST00000398665	NM_032482.2	641	cAg/cTg																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10600425	10600425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	748	885	1	ENST00000171111.5:c.1430del	p.Gly477AlafsTer23	p.G477Afs*23	ENST00000171111	NM_203500.1	477	gGc/gc																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149501602	149501602	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	184	351	0	ENST00000261799.4:c.2185del	p.His729MetfsTer4	p.H729Mfs*4	ENST00000261799	NM_002609.3	729	Cat/at																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	69	479	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	101	531	0	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	100	453	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913273		P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	59	413	0	ENST00000263967.3:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000263967	NM_006218.2	542	Gaa/Caa																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55131142	55131142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	81	439	1	ENST00000257290.5:c.685G>A	p.Glu229Lys	p.E229K	ENST00000257290	NM_006206.4	229	Gaa/Aaa																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49420268	49420268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	104	499	1	ENST00000301067.7:c.15481G>A	p.Glu5161Lys	p.E5161K	ENST00000301067	NM_003482.3	5161	Gag/Aag																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43622056	43622056	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	58	365	0	ENST00000355710.3:c.3073G>C	p.Asp1025His	p.D1025H	ENST00000355710	NM_020975.4	1025	Gac/Cac																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118376332	118376332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	93	512	0	ENST00000534358.1:c.9725C>A	p.Thr3242Asn	p.T3242N	ENST00000534358	NM_005933.3	3242	aCc/aAc																																													NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28610172	28610172	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	77	353	0	ENST00000241453.7:c.1318C>G	p.Gln440Glu	p.Q440E	ENST00000241453	NM_004119.2	440	Caa/Gaa																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28931694	28931694	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	57	340	0	ENST00000282397.4:c.2245C>T	p.Gln749Ter	p.Q749*	ENST00000282397	NM_002019.4	749	Caa/Taa																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061226	38061226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	83	478	0	ENST00000250448.2:c.763G>A	p.Glu255Lys	p.E255K	ENST00000250448	NM_004496.3	255	Gag/Aag																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2210632	2210632	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	75	420	0	ENST00000398665.3:c.1129G>C	p.Glu377Gln	p.E377Q	ENST00000398665	NM_032482.2	377	Gag/Cag																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5258124	5258124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	75	491	0	ENST00000357368.4:c.610G>C	p.Glu204Gln	p.E204Q	ENST00000357368	NM_002850.3	204	Gaa/Caa																																													NEWRECORD																																		
UPF1	5976	MSKCC	GRCh37	19	18956879	18956879	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	87	520	1	ENST00000262803.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000262803	NM_002911.3	108	Gat/Tat																																													NEWRECORD																																		
MLL4	9757	MSKCC	GRCh37	19	36221618	36221618	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	117	609	0	ENST00000222270.7:c.5287C>G	p.Leu1763Val	p.L1763V	ENST00000222270	NM_014727.1	1763	Ctg/Gtg																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	26029156	26029156	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	70	420	0	ENST00000435504.4:c.194G>C	p.Arg65Thr	p.R65T	ENST00000435504		65	aGa/aCa																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40944455	40944455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	102	544	0	ENST00000373198.4:c.2047G>A	p.Asp683Asn	p.D683N	ENST00000373198	NM_133170.3	683	Gac/Aac																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71050211	71050211	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	32	263	0	ENST00000318789.4:c.975-1G>A		p.X325_splice	ENST00000318789	NM_032682.5	325																																														NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56161166	56161166	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	49	297	0	ENST00000399503.3:c.1036-1G>C		p.X346_splice	ENST00000399503	NM_005921.1	346																																														NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56170986	56170987	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	33	230	0	ENST00000399503.3:c.1816dup	p.Ser606PhefsTer40	p.S606Ffs*40	ENST00000399503	NM_005921.1	605	aat/aaTt																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39933823	39933823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	82	622	0	ENST00000378444.4:c.776C>T	p.Ser259Leu	p.S259L	ENST00000378444	NM_001123385.1	259	tCg/tTg																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66765547	66765547	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	120	597	0	ENST00000374690.3:c.559G>C	p.Glu187Gln	p.E187Q	ENST00000374690	NM_000044.3	187	Gag/Cag																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0009824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1445	200	588	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0009824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	632	480	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157527847	157527847	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	94	366	0	ENST00000346085.5:c.5572G>C	p.Glu1858Gln	p.E1858Q	ENST00000346085	NM_020732.3	1858	Gag/Cag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0009824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	58	351	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																													NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35867540	35867541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1250237683		P-0009824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1196	67	377	0	ENST00000303115.3:c.361dup	p.Ile121AsnfsTer8	p.I121Nfs*8	ENST00000303115	NM_002185.3	118	-/A																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157511274	157511274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	67	403	0	ENST00000346085.5:c.3792G>A	p.Met1264Ile	p.M1264I	ENST00000346085	NM_020732.3	1264	atG/atA																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42042185	42042185	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1350	179	971	0	ENST00000219905.7:c.6380C>G	p.Ser2127Ter	p.S2127*	ENST00000219905	NM_001164273.1	2127	tCa/tGa																																													NEWRECORD																																		
BTK	695	MSKCC	GRCh37	X	100611144	100611144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	106	634	0	ENST00000308731.7:c.1462G>A	p.Glu488Lys	p.E488K	ENST00000308731	NM_000061.2	488	Gag/Aag																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	49027140	49027141	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0009824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	340	491	0	ENST00000267163.4:c.1709_1710dup	p.Asp571LeufsTer41	p.D571Lfs*41	ENST00000267163	NM_000321.2	569	-/TT																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0008853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	551	500	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0008853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	57	178	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																													NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185146452	185146452	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	139	290	0	ENST00000265026.3:c.83A>T	p.Gln28Leu	p.Q28L	ENST00000265026	NM_004721.4	28	cAa/cTa																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18435577	18435577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	97	325	0	ENST00000266497.5:c.562C>T	p.Pro188Ser	p.P188S	ENST00000266497		188	Ccg/Tcg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173624	112173625	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	181	335	0	ENST00000257430.4:c.2336dup	p.Leu779PhefsTer9	p.L779Ffs*9	ENST00000257430	NM_000038.5	778	aat/aaTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0011060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	149	391	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																													NEWRECORD																																		
TMEM127	55654	MSKCC	GRCh37	2	96919761	96919761	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	106	349	1	ENST00000258439.3:c.502C>T	p.Gln168Ter	p.Q168*	ENST00000258439	NM_001193304.2	168	Cag/Tag																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139396916	139396916	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761345476		P-0011060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	55	192	0	ENST00000277541.6:c.5192C>T	p.Pro1731Leu	p.P1731L	ENST00000277541	NM_017617.3	1731	cCg/cTg																																													NEWRECORD																																		
BIRC3	330	MSKCC	GRCh37	11	102206861	102206861	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	233	606	0	ENST00000263464.3:c.1489G>C	p.Asp497His	p.D497H	ENST00000263464	NM_001165.4	497	Gat/Cat																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28964121	28964121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	135	417	0	ENST00000282397.4:c.1781C>G	p.Thr594Arg	p.T594R	ENST00000282397	NM_002019.4	594	aCa/aGa																																													NEWRECORD																																		
RAD51D	5892	MSKCC	GRCh37	17	33430524	33430524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	152	515	1	ENST00000335858.7:c.280G>A	p.Asp94Asn	p.D94N	ENST00000335858	NM_133629.2	94	Gac/Aac																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15271876	15271878	+	frameshift_variant	Frame_Shift_Ins	INS	GGC	GGC	AGAA			P-0011060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	59	248	0	ENST00000263388.2:c.6561_6563delinsTTCT	p.Pro2188SerfsTer54	p.P2188Sfs*54	ENST00000263388	NM_000435.2	2187	ctGCCa/ctTTCTa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0008706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	105	545	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0008706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	69	342	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971170	21971170	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	24	83	0	ENST00000304494.5:c.188T>A	p.Leu63Gln	p.L63Q	ENST00000304494	NM_000077.4	63	cTg/cAg																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9943745	9943745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	36	265	0	ENST00000330684.3:c.1196G>A	p.Cys399Tyr	p.C399Y	ENST00000330684	NM_001134407.1	399	tGt/tAt																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56492895	56492896	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	22	133	0	ENST00000407977.2:c.43dup	p.Trp15LeufsTer25	p.W15Lfs*25	ENST00000407977		15	tgg/tTgg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0006707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	129	467	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27099422	27099422	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	74	705	0	ENST00000324856.7:c.3659T>C	p.Met1220Thr	p.M1220T	ENST00000324856	NM_006015.4	1220	aTg/aCg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578510	7578510	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	488	753	0	ENST00000269305.4:c.420del	p.Cys141AlafsTer29	p.C141Afs*29	ENST00000269305	NM_001126112.2	140	acC/ac																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114911638	114911639	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0006707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	322	706	0	ENST00000543371.1:c.1157_1158dupGG	p.Arg387GlyfsTer105	p.R387Gfs*105	ENST00000543371	NM_001198531.1	386	cgg/cGGgg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174782	112174783	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	54	652	0	ENST00000257430.4:c.3495dup	p.Tyr1166IlefsTer2	p.Y1166Ifs*2	ENST00000257430	NM_000038.5	1164	ata/atAa																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0000628-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	3348	310	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0000628-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			134	626	437	1	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55151625	55151625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000628-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			197	875	601	0	ENST00000257290.5:c.2411G>A	p.Arg804Gln	p.R804Q	ENST00000257290	NM_006206.4	804	cGa/cAa																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47143040	47143041	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTCCACT			P-0000628-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			841	244	436	0	ENST00000409792.3:c.4918-2_4922dupAGTGGAC	p.Asn1643AspfsTer25	p.N1643Dfs*25	ENST00000409792	NM_014159.6	1641	act/acAGTGGACt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27088787	27088788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	122	277	0	ENST00000324856.7:c.2402dupG	p.Gln802SerfsTer15	p.Q802Sfs*15	ENST00000324856	NM_006015.4	799	cag/caGg																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	125	185	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																													NEWRECORD																																		
MPL	4352	MSKCC	GRCh37	1	43817936	43817936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	113	470	0	ENST00000372470.3:c.1615C>A	p.Leu539Ile	p.L539I	ENST00000372470	NM_005373.2	539	Cta/Ata																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156843526	156843526	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	103	362	0	ENST00000524377.1:c.952A>T	p.Asn318Tyr	p.N318Y	ENST00000524377	NM_002529.3	318	Aat/Tat																																													NEWRECORD																																		
MYCN	4613	MSKCC	GRCh37	2	16085918	16085918	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs150742977		P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	106	228	0	ENST00000281043.3:c.1094C>A	p.Pro365Gln	p.P365Q	ENST00000281043	NM_005378.4	365	cCa/cAa																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29551342	29551342	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	119	276	0	ENST00000389048.3:c.1288T>A	p.Ser430Thr	p.S430T	ENST00000389048	NM_004304.4	430	Tcc/Acc																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55127579	55127579	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	58	116	0	ENST00000257290.5:c.367G>C	p.Asp123His	p.D123H	ENST00000257290	NM_006206.4	123	Gac/Cac																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117706968	117706968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	378	330	0	ENST00000368508.3:c.2182G>T	p.Val728Leu	p.V728L	ENST00000368508	NM_002944.2	728	Gtg/Ttg																																													NEWRECORD																																		
SYK	6850	MSKCC	GRCh37	9	93624510	93624510	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	346	234	1	ENST00000375746.1:c.601G>T	p.Gly201Cys	p.G201C	ENST00000375746	NM_001174167.1	201	Ggc/Tgc																																													NEWRECORD																																		
PAK1	5058	MSKCC	GRCh37	11	77066821	77066821	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	188	379	0	ENST00000356341.3:c.664A>G	p.Ile222Val	p.I222V	ENST00000356341	NM_002576.4	222	Att/Gtt																																													NEWRECORD																																		
SPOP	8405	MSKCC	GRCh37	17	47699411	47699411	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	123	233	0	ENST00000347630.2:c.97T>G	p.Ser33Ala	p.S33A	ENST00000347630	NM_001007230.1	33	Tcc/Gcc																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10600393	10600393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	372	453	0	ENST00000171111.5:c.1462G>A	p.Glu488Lys	p.E488K	ENST00000171111	NM_203500.1	488	Gag/Aag																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41726580	41726580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	129	338	0	ENST00000301178.4:c.125G>A	p.Gly42Glu	p.G42E	ENST00000301178	NM_021913.4	42	gGg/gAg																																													NEWRECORD																																		
BCL2L11	10018	MSKCC	GRCh37	2	111907683	111907684	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	174	305	0	ENST00000393256.3:c.458_459insTG	p.Arg154GlyfsTer17	p.R154Gfs*17	ENST00000393256	NM_006538.4	153	cgg/cGTgg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579472	7579473	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	188	186	0	ENST00000269305.4:c.214_215delinsG	p.Pro72AlafsTer51	p.P72Afs*51	ENST00000269305	NM_001126112.2	72	CCc/Gc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0009469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	270	437	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACCCCC			P-0009469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	150	349	0	ENST00000275493.2:c.2311_2319dup	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	gac/gACAACCCCCac																																													NEWRECORD																																		
CENPA	1058	MSKCC	GRCh37	2	27015035	27015035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	259	489	0	ENST00000335756.4:c.137G>A	p.Gly46Asp	p.G46D	ENST00000335756	NM_001809.3	46	gGt/gAt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0001830-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			643	177	540	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001830-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			427	30	472	0	ENST00000263967.3:c.3129G>C	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atC																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0001830-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			480	64	391	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16248762	16248762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001830-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	42	457	0	ENST00000375759.3:c.1768G>A	p.Glu590Lys	p.E590K	ENST00000375759	NM_015001.2	590	Gaa/Aaa																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2963931	2963931	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001830-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			792	156	489	0	ENST00000396946.4:c.1876G>T	p.Glu626Ter	p.E626*	ENST00000396946	NM_032415.4	626	Gag/Tag																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49426738	49426738	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001830-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			268	35	185	0	ENST00000301067.7:c.11750A>G	p.Gln3917Arg	p.Q3917R	ENST00000301067	NM_003482.3	3917	cAg/cGg																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1219341	1219341	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001830-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	143	376	0	ENST00000326873.7:c.393C>A	p.Tyr131Ter	p.Y131*	ENST00000326873	NM_000455.4	131	taC/taA																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41527514	41527514	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001830-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			637	99	515	0	ENST00000263253.7:c.1405G>T	p.Ala469Ser	p.A469S	ENST00000263253	NM_001429.3	469	Gca/Tca																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123181341	123181341	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001830-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			510	75	482	0	ENST00000218089.9:c.805C>T	p.Gln269Ter	p.Q269*	ENST00000218089	NM_001042749.1	269	Caa/Taa																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66467713	66467713	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001830-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			790	46	669	0	ENST00000273854.3:c.556del	p.Asp187IlefsTer7	p.D187Ifs*7	ENST00000273854	NM_004439.5	186	Ctt/tt																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81332004	81332005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001830-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			625	35	650	0	ENST00000222390.5:c.2079dup	p.Gly694TrpfsTer31	p.G694Wfs*31	ENST00000222390	NM_000601.4	693	-/T																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	197	389	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
HIST1H3B	8358	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1660	145	865	0	ENST00000244661.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000244661	NM_003537.3	106	Gag/Cag																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49936094	49936094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1373	214	776	0	ENST00000296474.3:c.1576G>T	p.Gly526Cys	p.G526C	ENST00000296474	NM_002447.2	526	Ggc/Tgc																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115120925	115120925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	268	427	0	ENST00000257566.3:c.81C>A	p.Asp27Glu	p.D27E	ENST00000257566	NM_016569.3	27	gaC/gaA																																													NEWRECORD																																		
MAX	4149	MSKCC	GRCh37	14	65544655	65544655	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	446	546	2	ENST00000358664.4:c.271C>T	p.Gln91Ter	p.Q91*	ENST00000358664	NM_002382.4	91	Cag/Tag																																													NEWRECORD																																		
AKT2	208	MSKCC	GRCh37	19	40744835	40744835	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	247	555	0	ENST00000392038.2:c.685A>G	p.Met229Val	p.M229V	ENST00000392038	NM_001626.4	229	Atg/Gtg																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47039625	47039626	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTGCAGATC			P-0007318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	148	233	0	ENST00000329236.7:c.850_858dup	p.Ile284_Gln286dup	p.I284_Q286dup	ENST00000329236	NM_001204466.1	284	-/CTGCAGATC																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			870	431	278	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	303	251	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10597401	10597401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	452	326	0	ENST00000171111.5:c.1802G>T	p.Arg601Leu	p.R601L	ENST00000171111	NM_203500.1	601	cGg/cTg																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212288910	212288910	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			663	276	248	0	ENST00000342788.4:c.2836A>G	p.Thr946Ala	p.T946A	ENST00000342788	NM_005235.2	946	Act/Gct																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71050182	71050182	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			369	336	262	0	ENST00000318789.4:c.1003G>C	p.Asp335His	p.D335H	ENST00000318789	NM_032682.5	335	Gat/Cat																																													NEWRECORD																																		
GSK3B	2932	MSKCC	GRCh37	3	119720972	119720972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			925	550	353	0	ENST00000316626.5:c.203G>T	p.Gly68Val	p.G68V	ENST00000316626		68	gGt/gTt																																													NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90993602	90993602	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1069	317	242	0	ENST00000265433.3:c.320+1G>T		p.X107_splice	ENST00000265433	NM_002485.4	107																																														NEWRECORD																																		
MYOD1	4654	MSKCC	GRCh37	11	17741834	17741834	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	129	105	0	ENST00000250003.3:c.505G>T	p.Ala169Ser	p.A169S	ENST00000250003	NM_002478.4	169	Gcc/Tcc																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18491436	18491436	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			863	358	276	0	ENST00000266497.5:c.1349C>A	p.Thr450Lys	p.T450K	ENST00000266497		450	aCa/aAa																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88420207	88420207	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			739	363	340	0	ENST00000360948.2:c.2479T>A	p.Leu827Met	p.L827M	ENST00000360948	NM_001012338.2	827	Ttg/Atg																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99460084	99460084	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			632	284	252	0	ENST00000268035.6:c.2180A>C	p.His727Pro	p.H727P	ENST00000268035	NM_000875.3	727	cAc/cCc																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30713333	30713334	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	288	240	0	ENST00000359013.4:c.734dup	p.Glu246GlyfsTer3	p.E246Gfs*3	ENST00000359013	NM_001024847.2	245	ctg/cTtg																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106508533	106508533	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	152	104	0	ENST00000359195.3:c.527del	p.Thr176SerfsTer6	p.T176Sfs*6	ENST00000359195	NM_002649.2	176	aCg/ag																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89685288	89685289	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000442-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	357	291	0	ENST00000371953.3:c.188dupA	p.Asn63LysfsTer11	p.N63Kfs*11	ENST00000371953	NM_000314.4	61	-/A																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106879	27106879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	110	278	0	ENST00000324856.7:c.6490C>T	p.Arg2164Trp	p.R2164W	ENST00000324856	NM_006015.4	2164	Cgg/Tgg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27107008	27107008	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	44	259	0	ENST00000324856.7:c.6619C>T	p.Gln2207Ter	p.Q2207*	ENST00000324856	NM_006015.4	2207	Cag/Tag																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71019886	71019886	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	135	316	0	ENST00000318789.4:c.1722+1G>T		p.X574_splice	ENST00000318789	NM_032682.5	574																																														NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71026105	71026105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	120	323	0	ENST00000318789.4:c.1517C>T	p.Ala506Val	p.A506V	ENST00000318789	NM_032682.5	506	gCg/gTg																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134898826	134898826	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	66	341	0	ENST00000398015.3:c.1882+2T>C		p.X628_splice	ENST00000398015	NM_004441.4	628																																														NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142255002	142255002	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	41	358	0	ENST00000350721.4:c.3767C>A	p.Pro1256His	p.P1256H	ENST00000350721	NM_001184.3	1256	cCt/cAt																																													NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185161350	185161350	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	105	457	0	ENST00000265026.3:c.777G>C	p.Trp259Cys	p.W259C	ENST00000265026	NM_004721.4	259	tgG/tgC																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55133571	55133571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	114	370	1	ENST00000257290.5:c.875C>T	p.Ala292Val	p.A292V	ENST00000257290	NM_006206.4	292	gCc/gTc																																													NEWRECORD																																		
KIT	3815	MSKCC	GRCh37	4	55589818	55589818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	86	375	0	ENST00000288135.5:c.1300C>A	p.Pro434Thr	p.P434T	ENST00000288135	NM_000222.2	434	Cca/Aca																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66233135	66233135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	166	441	0	ENST00000273854.3:c.1864G>T	p.Gly622Cys	p.G622C	ENST00000273854	NM_004439.5	622	Ggc/Tgc																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	131	379	2	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38947467	38947467	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	153	389	0	ENST00000357387.3:c.4213C>T	p.Arg1405Ter	p.R1405*	ENST00000357387	NM_152756.3	1405	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	155	434	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139405225	139405225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	133	354	0	ENST00000277541.6:c.2620G>A	p.Val874Ile	p.V874I	ENST00000277541	NM_017617.3	874	Gtt/Att																																													NEWRECORD																																		
TRAF2	7186	MSKCC	GRCh37	9	139794896	139794896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	218	608	0	ENST00000247668.2:c.290G>A	p.Arg97His	p.R97H	ENST00000247668	NM_021138.3	97	cGc/cAc																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89685307	89685307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	111	275	0	ENST00000371953.3:c.202T>C	p.Tyr68His	p.Y68H	ENST00000371953	NM_000314.4	68	Tac/Cac																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	127	315	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																													NEWRECORD																																		
YAP1	10413	MSKCC	GRCh37	11	102056856	102056856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	214	483	0	ENST00000282441.5:c.796C>T	p.Arg266Cys	p.R266C	ENST00000282441	NM_001130145.2	266	Cgt/Tgt																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133202251	133202251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	144	399	0	ENST00000320574.5:c.6637G>A	p.Ala2213Thr	p.A2213T	ENST00000320574	NM_006231.2	2213	Gcc/Acc																																													NEWRECORD																																		
LATS2	26524	MSKCC	GRCh37	13	21562220	21562220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			959	357	729	0	ENST00000382592.4:c.1699G>A	p.Gly567Arg	p.G567R	ENST00000382592	NM_014572.2	567	Gga/Aga																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23637597	23637597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	194	439	0	ENST00000261584.4:c.2708C>T	p.Ala903Val	p.A903V	ENST00000261584	NM_024675.3	903	gCt/gTt																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68844112	68844112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	73	321	0	ENST00000261769.5:c.700G>A	p.Ala234Thr	p.A234T	ENST00000261769	NM_004360.3	234	Gct/Act																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72828221	72828221	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	169	801	1	ENST00000268489.5:c.8360C>A	p.Pro2787His	p.P2787H	ENST00000268489	NM_006885.3	2787	cCt/cAt																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72984709	72984709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	241	606	0	ENST00000268489.5:c.2875G>A	p.Asp959Asn	p.D959N	ENST00000268489	NM_006885.3	959	Gac/Aac																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs786201057		P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	98	253	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																													NEWRECORD																																		
ALOX12B	242	MSKCC	GRCh37	17	7976219	7976219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	39	278	0	ENST00000319144.4:c.1976G>A	p.Arg659Gln	p.R659Q	ENST00000319144	NM_001139.2	659	cGg/cAg																																													NEWRECORD																																		
AURKB	9212	MSKCC	GRCh37	17	8108364	8108364	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	66	222	0	ENST00000585124.1:c.862-2A>G		p.X288_splice	ENST00000585124	NM_004217.3	288																																														NEWRECORD																																		
AURKB	9212	MSKCC	GRCh37	17	8110524	8110524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	95	290	0	ENST00000585124.1:c.368G>A	p.Arg123His	p.R123H	ENST00000585124	NM_004217.3	123	cGc/cAc																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2213905	2213905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750798710		P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	87	318	0	ENST00000398665.3:c.1717G>A	p.Ala573Thr	p.A573T	ENST00000398665	NM_032482.2	573	Gcc/Acc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5214604	5214604	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116515629		P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	310	446	0	ENST00000357368.4:c.4462G>A	p.Val1488Ile	p.V1488I	ENST00000357368	NM_002850.3	1488	Gtc/Atc																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7125394	7125394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	223	492	2	ENST00000302850.5:c.3158G>A	p.Arg1053His	p.R1053H	ENST00000302850	NM_000208.2	1053	cGc/cAc																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11098501	11098501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	87	258	0	ENST00000344626.4:c.1019C>T	p.Ala340Val	p.A340V	ENST00000344626	NM_003072.3	340	gCg/gTg																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15281518	15281518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	145	361	0	ENST00000263388.2:c.4855C>T	p.Arg1619Cys	p.R1619C	ENST00000263388	NM_000435.2	1619	Cgc/Tgc																																													NEWRECORD																																		
CD79A	973	MSKCC	GRCh37	19	42383257	42383257	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	218	665	0	ENST00000221972.3:c.277A>G	p.Ile93Val	p.I93V	ENST00000221972	NM_021601.3	93	Atc/Gtc																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42798424	42798424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	162	381	0	ENST00000575354.2:c.4295G>A	p.Cys1432Tyr	p.C1432Y	ENST00000575354	NM_015125.3	1432	tGc/tAc																																													NEWRECORD																																		
BBC3	27113	MSKCC	GRCh37	19	47725076	47725076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	144	512	1	ENST00000449228.1:c.668G>A	p.Arg223Gln	p.R223Q	ENST00000449228	NM_001127240.2	223	cGa/cAa																																													NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31386351	31386351	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	80	345	0	ENST00000328111.2:c.1576A>G	p.Met526Val	p.M526V	ENST00000328111	NM_006892.3	526	Atg/Gtg																																													NEWRECORD																																		
SRC	6714	MSKCC	GRCh37	20	36024567	36024567	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	127	385	0	ENST00000358208.4:c.556G>A	p.Ala186Thr	p.A186T	ENST00000358208		186	Gcc/Acc																																													NEWRECORD																																		
MAPK1	5594	MSKCC	GRCh37	22	22221706	22221706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	42	95	0	ENST00000215832.6:c.25G>A	p.Ala9Thr	p.A9T	ENST00000215832	NM_002745.4	9	Gcg/Acg																																													NEWRECORD																																		
SMARCB1	6598	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	124	438	0	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt																																													NEWRECORD																																		
NF2	4771	MSKCC	GRCh37	22	30067827	30067827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	34	229	1	ENST00000338641.4:c.1012C>T	p.Arg338Cys	p.R338C	ENST00000338641	NM_000268.3	338	Cgc/Tgc																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	188	295	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	24	85	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																													NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28624317	28624317	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	237	431	1	ENST00000241453.7:c.657del	p.Val220CysfsTer10	p.V220Cfs*10	ENST00000241453	NM_004119.2	219	aaA/aa																																													NEWRECORD																																		
SUFU	51684	MSKCC	GRCh37	10	104263952	104263952	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	49	97	0	ENST00000369902.3:c.47del	p.Pro16ArgfsTer80	p.P16Rfs*80	ENST00000369902	NM_016169.3	15	Ccc/cc																																													NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28597588	28597588	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	167	534	4	ENST00000241453.7:c.2317del	p.Arg773GlyfsTer8	p.R773Gfs*8	ENST00000241453	NM_004119.2	773	Agg/gg																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15296358	15296358	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	42	379	1	ENST00000263388.2:c.2084del	p.Pro695ArgfsTer165	p.P695Rfs*165	ENST00000263388	NM_000435.2	695	cCg/cg																																													NEWRECORD																																		
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	161	406	4	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	112	273	0	ENST00000245479.2:c.916delG	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	48	449	0	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110435283	110435283	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	12	50	0	ENST00000375856.3:c.3118del	p.Glu1040SerfsTer66	p.E1040Sfs*66	ENST00000375856	NM_003749.2	1040	Gag/ag																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372093	55372093	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	36	114	2	ENST00000297316.4:c.788del	p.Pro263ArgfsTer124	p.P263Rfs*124	ENST00000297316	NM_022454.3	261	ggC/gg																																													NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185191049	185191049	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	87	451	0	ENST00000265026.3:c.1934del	p.Pro645LeufsTer19	p.P645Lfs*19	ENST00000265026	NM_004721.4	644	Ccc/cc																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15353819	15353819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	53	277	1	ENST00000263377.2:c.3061delC	p.His1021IlefsTer47	p.H1021Ifs*47	ENST00000263377	NM_058243.2	1021	Cat/at																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	288	605	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																													NEWRECORD																																		
MLH1	4292	MSKCC	GRCh37	3	37053348	37053348	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs35847123		P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	98	450	0	ENST00000231790.2:c.588delA	p.Lys196AsnfsTer6	p.K196Nfs*6	ENST00000231790	NM_000249.3	195	Aaa/aa																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15271747	15271747	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	89	426	0	ENST00000263388.2:c.6692del	p.Pro2231GlnfsTer15	p.P2231Qfs*15	ENST00000263388	NM_000435.2	2231	cCa/ca																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112157627	112157628	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	149	434	0	ENST00000257430.4:c.1354_1355del	p.Val452SerfsTer7	p.V452Sfs*7	ENST00000257430	NM_000038.5	449	gcTGtg/gctg																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	152012386	152012386	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	128	413	0	ENST00000262189.6:c.427delA	p.Ser143ValfsTer3	p.S143Vfs*3	ENST00000262189	NM_170606.2	143	Agt/gt																																													NEWRECORD																																		
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	126	416	5	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16255882	16255883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	109	239	1	ENST00000375759.3:c.3154dup	p.Ile1052AsnfsTer7	p.I1052Nfs*7	ENST00000375759	NM_015001.2	1049	-/A																																													NEWRECORD																																		
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	173	604	4	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																													NEWRECORD																																		
STAT5A	6776	MSKCC	GRCh37	17	40456603	40456605	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1192	66	669	0	ENST00000345506.4:c.1315_1317del	p.Lys439del	p.K439del	ENST00000345506	NM_003152.3	438	gAGAag/gag																																													NEWRECORD																																		
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	114	373	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																													NEWRECORD																																		
FANCC	2176	MSKCC	GRCh37	9	98003011	98003011	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	132	430	0	ENST00000289081.3:c.265del	p.Ile89PhefsTer2	p.I89Ffs*2	ENST00000289081	NM_000136.2	89	Att/tt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	29	291	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46125044	46125045	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	37	306	0	ENST00000334344.6:c.234dup	p.Pro79SerfsTer6	p.P79Sfs*6	ENST00000334344	NM_152641.2	77	-/T																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81334713	81334713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	263	721	0	ENST00000222390.5:c.2003C>T	p.Pro668Leu	p.P668L	ENST00000222390	NM_000601.4	668	cCa/cTa																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	26029108	26029108	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	380	504	0	ENST00000435504.4:c.242A>G	p.Tyr81Cys	p.Y81C	ENST00000435504		81	tAt/tGt																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48953759	48953759	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	345	315	0	ENST00000267163.4:c.1362C>A	p.Tyr454Ter	p.Y454*	ENST00000267163	NM_000321.2	454	taC/taA																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9923306	9923306	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	192	527	1	ENST00000330684.3:c.1981C>T	p.Gln661Ter	p.Q661*	ENST00000330684	NM_001134407.1	661	Caa/Taa																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16012112	16012112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	183	527	1	ENST00000268712.3:c.2170G>A	p.Glu724Lys	p.E724K	ENST00000268712	NM_006311.3	724	Gaa/Aaa																																													NEWRECORD																																		
ERG	2078	MSKCC	GRCh37	21	39755338	39755338	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	218	593	0	ENST00000288319.7:c.1427G>T	p.Gly476Val	p.G476V	ENST00000288319	NM_182918.3	476	gGc/gTc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579470	7579470	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AG			P-0011508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	303	426	0	ENST00000269305.4:c.217delinsCT	p.Val73LeufsTer76	p.V73Lfs*76	ENST00000269305	NM_001126112.2	73	Gtg/CTtg																																													NEWRECORD																																		
SDHB	6390	MSKCC	GRCh37	1	17371306	17371306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1434	83	696	0	ENST00000375499.3:c.150C>A	p.Asp50Glu	p.D50E	ENST00000375499	NM_003000.2	50	gaC/gaA																																													NEWRECORD																																		
MYCL1	4610	MSKCC	GRCh37	1	40363342	40363342	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	150	490	0	ENST00000397332.2:c.887A>T	p.Gln296Leu	p.Q296L	ENST00000397332	NM_001033082.2	296	cAg/cTg																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120458005	120458005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	96	454	0	ENST00000256646.2:c.7340G>T	p.Gly2447Val	p.G2447V	ENST00000256646	NM_024408.3	2447	gGt/gTt																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120529637	120529637	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1035	79	766	1	ENST00000256646.2:c.820G>T	p.Val274Phe	p.V274F	ENST00000256646	NM_024408.3	274	Gtt/Ttt																																													NEWRECORD																																		
RIT1	6016	MSKCC	GRCh37	1	155874166	155874166	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1452	190	816	2	ENST00000368323.3:c.365G>T	p.Arg122Leu	p.R122L	ENST00000368323	NM_006912.5	122	cGa/cTa																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29445228	29445228	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1096	317	638	0	ENST00000389048.3:c.3497T>C	p.Met1166Thr	p.M1166T	ENST00000389048	NM_004304.4	1166	aTg/aCg																																													NEWRECORD																																		
PMS1	5378	MSKCC	GRCh37	2	190719492	190719492	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	361	534	0	ENST00000441310.2:c.1494G>T	p.Trp498Cys	p.W498C	ENST00000441310	NM_000534.4	498	tgG/tgT																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198262762	198262762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1124	143	753	0	ENST00000335508.6:c.3213G>C	p.Lys1071Asn	p.K1071N	ENST00000335508	NM_012433.2	1071	aaG/aaC																																													NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215646160	215646160	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	96	474	0	ENST00000260947.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000260947	NM_000465.2	146	tgG/tgA																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227662550	227662550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	134	440	0	ENST00000305123.5:c.905G>T	p.Arg302Leu	p.R302L	ENST00000305123	NM_005544.2	302	cGa/cTa																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227663355	227663355	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	141	250	0	ENST00000305123.5:c.100G>T	p.Ala34Ser	p.A34S	ENST00000305123	NM_005544.2	34	Gcg/Tcg																																													NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242793248	242793250	+	missense_variant	Missense_Mutation	ONP	GTG	GTG	TTT			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	253	599	0	ENST00000334409.5:c.827_829delinsAAA	p.Pro276_Leu277delinsGlnMet	p.P276_L277delinsQM	ENST00000334409	NM_005018.2	276	cCACtg/cAAAtg																																													NEWRECORD																																		
RAF1	5894	MSKCC	GRCh37	3	12650274	12650274	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	131	720	0	ENST00000251849.4:c.572G>T	p.Arg191Ile	p.R191I	ENST00000251849	NM_002880.3	191	aGa/aTa																																													NEWRECORD																																		
BAP1	8314	MSKCC	GRCh37	3	52437608	52437608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1458	250	1064	0	ENST00000460680.1:c.1553G>T	p.Arg518Leu	p.R518L	ENST00000460680	NM_004656.3	518	cGg/cTg																																													NEWRECORD																																		
SHQ1	55164	MSKCC	GRCh37	3	72893510	72893510	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	153	664	0	ENST00000325599.8:c.208G>T	p.Gly70Ter	p.G70*	ENST00000325599	NM_018130.2	70	Gga/Tga																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142234256	142234256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1042	108	672	1	ENST00000350721.4:c.4484C>T	p.Ala1495Val	p.A1495V	ENST00000350721	NM_001184.3	1495	gCa/gTa																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55153684	55153684	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1254	87	891	1	ENST00000257290.5:c.2650C>A	p.Leu884Met	p.L884M	ENST00000257290	NM_006206.4	884	Ctg/Atg																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55961746	55961746	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	76	670	0	ENST00000263923.4:c.2815A>G	p.Lys939Glu	p.K939E	ENST00000263923	NM_002253.2	939	Aag/Gag																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66197774	66197774	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	61	677	1	ENST00000273854.3:c.2925G>T	p.Glu975Asp	p.E975D	ENST00000273854	NM_004439.5	975	gaG/gaT																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66201839	66201839	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	39	413	0	ENST00000273854.3:c.2663T>A	p.Ile888Asn	p.I888N	ENST00000273854	NM_004439.5	888	aTt/aAt																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187539446	187539446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	75	585	0	ENST00000441802.2:c.8294G>T	p.Ser2765Ile	p.S2765I	ENST00000441802	NM_005245.3	2765	aGt/aTt																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86627209	86627209	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	103	619	2	ENST00000274376.6:c.584T>A	p.Leu195His	p.L195H	ENST00000274376	NM_002890.2	195	cTc/cAc																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176637244	176637244	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	251	604	0	ENST00000439151.2:c.1844G>T	p.Cys615Phe	p.C615F	ENST00000439151	NM_022455.4	615	tGt/tTt																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180043968	180043968	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	99	713	0	ENST00000261937.6:c.3028A>G	p.Thr1010Ala	p.T1010A	ENST00000261937	NM_182925.4	1010	Acc/Gcc																																													NEWRECORD																																		
HIST1H3B	8358	MSKCC	GRCh37	6	26032155	26032155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1178	413	1153	0	ENST00000244661.2:c.134G>T	p.Gly45Val	p.G45V	ENST00000244661	NM_003537.3	45	gGc/gTc																																													NEWRECORD																																		
HIST1H3D	8351	MSKCC	GRCh37	6	26197334	26197334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1563	492	1464	1	ENST00000356476.2:c.145C>A	p.Leu49Met	p.L49M	ENST00000356476		49	Ctg/Atg																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30680215	30680215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	423	779	0	ENST00000376406.3:c.1504G>T	p.Asp502Tyr	p.D502Y	ENST00000376406	NM_014641.2	502	Gat/Tat																																													NEWRECORD																																		
INHBA	3624	MSKCC	GRCh37	7	41729848	41729848	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1662	781	951	0	ENST00000242208.4:c.681C>G	p.Ile227Met	p.I227M	ENST00000242208	NM_002192.2	227	atC/atG																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116340097	116340097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35776110		P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	67	414	2	ENST00000397752.3:c.959C>T	p.Ala320Val	p.A320V	ENST00000397752	NM_000245.2	320	gCg/gTg																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151873458	151873459	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1689	104	739	1	ENST00000262189.6:c.9079_9080delinsTT	p.Gly3027Leu	p.G3027L	ENST00000262189	NM_170606.2	3027	GGa/TTa																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372052	55372052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	256	328	1	ENST00000297316.4:c.742G>T	p.Ala248Ser	p.A248S	ENST00000297316	NM_022454.3	248	Gcc/Tcc																																													NEWRECORD																																		
RAD21	5885	MSKCC	GRCh37	8	117868912	117868912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	120	645	0	ENST00000297338.2:c.787G>A	p.Asp263Asn	p.D263N	ENST00000297338	NM_006265.2	263	Gat/Aat																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971105	21971105	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	88	256	0	ENST00000304494.5:c.253G>C	p.Ala85Pro	p.A85P	ENST00000304494	NM_000077.4	85	Gct/Cct																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139405143	139405143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	314	756	0	ENST00000277541.6:c.2702G>T	p.Gly901Val	p.G901V	ENST00000277541	NM_017617.3	901	gGg/gTg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139409982	139409982	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	193	753	0	ENST00000277541.6:c.1856A>T	p.Gln619Leu	p.Q619L	ENST00000277541	NM_017617.3	619	cAg/cTg																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43609942	43609942	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1366	316	1230	1	ENST00000355710.3:c.1894G>T	p.Glu632Ter	p.E632*	ENST00000355710	NM_020975.4	632	Gag/Tag																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89712018	89712018	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	75	215	0	ENST00000371953.3:c.634+2T>G		p.X212_splice	ENST00000371953	NM_000314.4	212																																														NEWRECORD																																		
HRAS	3265	MSKCC	GRCh37	11	532696	532696	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	318	791	0	ENST00000311189.7:c.510G>T	p.Lys170Asn	p.K170N	ENST00000311189		170	aaG/aaT																																													NEWRECORD																																		
H3F3C	440093	MSKCC	GRCh37	12	31944894	31944894	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	113	380	0	ENST00000340398.3:c.207G>T	p.Arg69Ser	p.R69S	ENST00000340398	NM_001013699.2	69	agG/agT																																													NEWRECORD																																		
SH2B3	10019	MSKCC	GRCh37	12	111856190	111856190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	120	428	2	ENST00000341259.2:c.241G>A	p.Asp81Asn	p.D81N	ENST00000341259	NM_005475.2	81	Gac/Aac																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28886132	28886132	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1084	129	713	0	ENST00000282397.4:c.3490C>T	p.Gln1164Ter	p.Q1164*	ENST00000282397	NM_002019.4	1164	Cag/Tag																																													NEWRECORD																																		
FOXO1	2308	MSKCC	GRCh37	13	41240281	41240281	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	161	521	0	ENST00000379561.5:c.69C>G	p.Cys23Trp	p.C23W	ENST00000379561	NM_002015.3	23	tgC/tgG																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95557639	95557639	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1079	214	756	1	ENST00000343455.3:c.5428G>T	p.Asp1810Tyr	p.D1810Y	ENST00000343455	NM_177438.2	1810	Gat/Tat																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88476262	88476262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1002	144	625	1	ENST00000360948.2:c.1870G>T	p.Asp624Tyr	p.D624Y	ENST00000360948	NM_001012338.2	624	Gac/Tac																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88678470	88678470	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	139	755	0	ENST00000360948.2:c.1066G>T	p.Gly356Ter	p.G356*	ENST00000360948	NM_001012338.2	356	Gga/Tga																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23646393	23646393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1121	183	669	0	ENST00000261584.4:c.1474G>T	p.Gly492Trp	p.G492W	ENST00000261584	NM_024675.3	492	Ggg/Tgg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	260	522	1	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16042354	16042354	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	290	713	0	ENST00000268712.3:c.1320G>T	p.Trp440Cys	p.W440C	ENST00000268712	NM_006311.3	440	tgG/tgT																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70120182	70120184	+	frameshift_variant	Frame_Shift_Del	DEL	CGC	CGC	AG			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	174	404	0	ENST00000245479.2:c.1184_1186delinsAG	p.Thr395LysfsTer8	p.T395Kfs*8	ENST00000245479	NM_000346.3	395	aCGCac/aAGac																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10610337	10610337	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	356	641	0	ENST00000171111.5:c.373A>T	p.Ile125Phe	p.I125F	ENST00000171111	NM_203500.1	125	Att/Ttt																																													NEWRECORD																																		
AKT2	208	MSKCC	GRCh37	19	40741971	40741971	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	602	819	0	ENST00000392038.2:c.1001G>T	p.Trp334Leu	p.W334L	ENST00000392038	NM_001626.4	334	tGg/tTg																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9546860	9546860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	263	454	0	ENST00000353224.5:c.1162C>A	p.Leu388Met	p.L388M	ENST00000353224	NM_177990.2	388	Ctg/Atg																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9561061	9561061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	260	456	0	ENST00000353224.5:c.721G>A	p.Gly241Arg	p.G241R	ENST00000353224	NM_177990.2	241	Ggg/Agg																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9561224	9561224	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1259	79	647	0	ENST00000353224.5:c.558G>T	p.Lys186Asn	p.K186N	ENST00000353224	NM_177990.2	186	aaG/aaT																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40877406	40877406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	243	484	0	ENST00000373198.4:c.2290G>T	p.Val764Leu	p.V764L	ENST00000373198	NM_133170.3	764	Gtg/Ttg																																													NEWRECORD																																		
U2AF1	7307	MSKCC	GRCh37	21	44520622	44520622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			996	182	501	0	ENST00000291552.4:c.140C>T	p.Ala47Val	p.A47V	ENST00000291552	NM_006758.2	47	gCc/gTc																																													NEWRECORD																																		
SMARCB1	6598	MSKCC	GRCh37	22	24145489	24145489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	64	493	0	ENST00000263121.7:c.508G>T	p.Asp170Tyr	p.D170Y	ENST00000263121	NM_003073.3	170	Gac/Tac																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9857075	9857075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1406	87	707	0	ENST00000330684.3:c.4326del	p.Arg1443GlyfsTer3	p.R1443Gfs*3	ENST00000330684	NM_001134407.1	1442	ccC/cc																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2222015	2222015	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	354	610	0	ENST00000398665.3:c.2848del	p.Ala950ArgfsTer118	p.A950Rfs*118	ENST00000398665	NM_032482.2	949	ttG/tt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106545	27106546	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1480	285	897	1	ENST00000324856.7:c.6158dup	p.Leu2053PhefsTer46	p.L2053Ffs*46	ENST00000324856	NM_006015.4	2052	-/T																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112102982	112102982	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	247	673	0	ENST00000257430.4:c.317del	p.Arg106LeufsTer19	p.R106Lfs*19	ENST00000257430	NM_000038.5	106	cGt/ct																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0004232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	304	750	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0004232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	175	953	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48953730	48953730	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs3092891		P-0004232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	130	531	0	ENST00000267163.4:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000267163	NM_000321.2	445	Cga/Tga																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178921551	178921551	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	9	638	0	ENST00000263967.3:c.1033A>T	p.Asn345Tyr	p.N345Y	ENST00000263967	NM_006218.2	345	Aat/Tat																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112170689	112170689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	88	744	0	ENST00000257430.4:c.1785G>T	p.Leu595Phe	p.L595F	ENST00000257430	NM_000038.5	595	ttG/ttT																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64575125	64575126	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTA			P-0004232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	76	616	0	ENST00000337652.1:c.694_696dup	p.Tyr232dup	p.Y232dup	ENST00000337652	NM_130803.2	232	-/TAC																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49940810	49940811	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0004232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	135	1080	0	ENST00000296474.3:c.231_232dup	p.Leu78ProfsTer9	p.L78Pfs*9	ENST00000296474	NM_002447.2	78	ctg/cCCtg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	120	582	0	ENST00000269305.4:c.672G>C	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaC																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25466788	25466788	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	120	535	0	ENST00000264709.3:c.1915C>G	p.Leu639Val	p.L639V	ENST00000264709	NM_175629.2	639	Ctc/Gtc																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55133883	55133883	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	52	431	0	ENST00000257290.5:c.1096G>C	p.Asp366His	p.D366H	ENST00000257290	NM_006206.4	366	Gat/Cat																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55225387	55225387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	97	370	0	ENST00000275493.2:c.1239C>A	p.Asn413Lys	p.N413K	ENST00000275493	NM_005228.3	413	aaC/aaA																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98244444	98244444	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	12	363	0	ENST00000331920.6:c.626T>G	p.Leu209Arg	p.L209R	ENST00000331920	NM_000264.3	209	cTt/cGt																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	432859	432859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	63	518	0	ENST00000399788.2:c.2057C>T	p.Ser686Phe	p.S686F	ENST00000399788	NM_001042603.1	686	tCt/tTt																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23635339	23635339	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	80	463	0	ENST00000261584.4:c.2825G>C	p.Arg942Thr	p.R942T	ENST00000261584	NM_024675.3	942	aGa/aCa																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2194543	2194543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	37	716	0	ENST00000398665.3:c.618G>A	p.Met206Ile	p.M206I	ENST00000398665	NM_032482.2	206	atG/atA																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2213568	2213568	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	82	535	0	ENST00000398665.3:c.1588C>G	p.Gln530Glu	p.Q530E	ENST00000398665	NM_032482.2	530	Cag/Gag																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53228162	53228162	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	93	573	0	ENST00000375401.3:c.2240T>C	p.Leu747Pro	p.L747P	ENST00000375401	NM_004187.3	747	cTg/cCg																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70117948	70117969	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGGCAAGCTCTGGAGGTAGGA	TGGGCAAGCTCTGGAGGTAGGA	-			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	40	303	0	ENST00000245479.2:c.416_431+6del		p.X139_splice	ENST00000245479	NM_000346.3	139																																														NEWRECORD																																		
GATA2	2624	MSKCC	GRCh37	3	128200704	128200705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	115	508	0	ENST00000341105.2:c.1100dup	p.Asp367GlufsTer17	p.D367Efs*17	ENST00000341105	NM_032638.4	367	gac/gaAc																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41243034	41243035	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGA			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	105	523	0	ENST00000357654.3:c.4108_4111dup	p.Gly1371ValfsTer4	p.G1371Vfs*4	ENST00000357654	NM_007294.3	1371	ggg/gTCTGgg																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70117942	70117943	+	protein_altering_variant	In_Frame_Ins	INS	AG	AG	CTTGCACA			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	42	329	0	ENST00000245479.2:c.410_411delinsCTTGCACA	p.Lys137delinsThrCysThr	p.K137delinsTCT	ENST00000245479	NM_000346.3	137	aAG/aCTTGCACA																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	114	449	0	ENST00000206249.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000206249	NM_000125.3	536	cTc/cCc																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225360638	225360638	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	145	549	0	ENST00000264414.4:c.1753T>G	p.Ser585Ala	p.S585A	ENST00000264414	NM_003590.4	585	Tct/Gct																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135777041	135777041	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	142	563	0	ENST00000298552.3:c.2437G>T	p.Glu813Ter	p.E813*	ENST00000298552	NM_001162426.1	813	Gaa/Taa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578411	7578411	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	237	412	0	ENST00000269305.4:c.519del	p.Arg174GlyfsTer73	p.R174Gfs*73	ENST00000269305	NM_001126112.2	173	gtG/gt																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50918078	50918080	+	protein_altering_variant	In_Frame_Ins	INS	TTC	TTC	CTGCTTATCAGT			P-0005972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	134	664	0	ENST00000440232.2:c.2395_2397delinsCTGCTTATCAGT	p.Phe799delinsLeuLeuIleSer	p.F799delinsLLIS	ENST00000440232	NM_002691.3	799	TTC/CTGCTTATCAGT																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398123121		P-0013156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	606	406	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																													NEWRECORD																																		
CDKN1B	1027	MSKCC	GRCh37	12	12870953	12870953	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	262	512	0	ENST00000228872.4:c.180G>C	p.Trp60Cys	p.W60C	ENST00000228872	NM_004064.3	60	tgG/tgC																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133760765	133760765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	113	575	0	ENST00000318560.5:c.3088G>A	p.Gly1030Ser	p.G1030S	ENST00000318560	NM_005157.4	1030	Ggc/Agc																																													NEWRECORD																																		
AURKA	6790	MSKCC	GRCh37	20	54959326	54959326	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0013156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2143	153	621	0	ENST00000312783.6:c.374A>C	p.Lys125Thr	p.K125T	ENST00000312783	NM_198436.1	125	aAg/aCg																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66766408	66766408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	29	70	0	ENST00000374690.3:c.1420G>A	p.Glu474Lys	p.E474K	ENST00000374690	NM_000044.3	474	Gag/Aag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578226	7578227	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATCCAAA			P-0013156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	1000	874	0	ENST00000269305.4:c.615_622dup	p.Asp208ValfsTer42	p.D208Vfs*42	ENST00000269305	NM_001126112.2	208	gac/gTTTGGATGac																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484265	57484361	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGATCAGGTGTGCAAAACCCCTCCCCACCAGAGGACTCTGAGCCCTCTTTCCAAACTACTCCAGACCTTTGCTTTAGATTGGCAATTATTACTGTTT	CGATCAGGTGTGCAAAACCCCTCCCCACCAGAGGACTCTGAGCCCTCTTTCCAAACTACTCCAGACCTTTGCTTTAGATTGGCAATTATTACTGTTT	-			P-0005176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	95	315	0	ENST00000371085.3:c.581_586-42del		p.X194_splice	ENST00000371085	NM_000516.4	194																																														NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579341	7579342	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGC			P-0005176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	218	425	0	ENST00000269305.4:c.342_345dup	p.Ser116AlafsTer34	p.S116Afs*34	ENST00000269305	NM_001126112.2	115	-/GCAT																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	146	443	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	82	557	0	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604701	48604701	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	59	612	0	ENST00000342988.3:c.1523G>T	p.Gly508Val	p.G508V	ENST00000342988	NM_005359.5	508	gGc/gTc																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18439807	18439807	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	70	437	0	ENST00000266497.5:c.706del	p.Glu236LysfsTer17	p.E236Kfs*17	ENST00000266497		235	gtG/gt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27107135	27107136	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	52	340	0	ENST00000324856.7:c.6747dupA	p.Glu2250ArgfsTer28	p.E2250Rfs*28	ENST00000324856	NM_006015.4	2249	tca/tcAa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0010139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	247	505	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0010139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	175	1035	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249510	153249510	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1157879635		P-0010139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	74	490	0	ENST00000281708.4:c.1268G>T	p.Gly423Val	p.G423V	ENST00000281708	NM_033632.3	423	gGa/gTa																																													NEWRECORD																																		
CDK8	1024	MSKCC	GRCh37	13	26828881	26828881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	334	516	2	ENST00000381527.3:c.103G>A	p.Val35Ile	p.V35I	ENST00000381527	NM_001260.1	35	Gtc/Atc																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591901	48591901	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	182	725	0	ENST00000342988.3:c.1064A>G	p.Asp355Gly	p.D355G	ENST00000342988	NM_005359.5	355	gAc/gGc																																													NEWRECORD																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52714657	52714657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	363	567	0	ENST00000322088.6:c.415G>A	p.Asp139Asn	p.D139N	ENST00000322088	NM_014225.5	139	Gac/Aac																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578283	7578284	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	296	575	0	ENST00000269305.4:c.565dup	p.Ala189GlyfsTer20	p.A189Gfs*20	ENST00000269305	NM_001126112.2	189	gcc/gGcc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175650	112175651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	101	689	0	ENST00000257430.4:c.4364dup	p.Asn1455LysfsTer2	p.N1455Kfs*2	ENST00000257430	NM_000038.5	1453	-/A																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	38	208	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																													NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	161	572	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	29	168	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519930		P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	196	872	2	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																													NEWRECORD																																		
PMS2	5395	MSKCC	GRCh37	7	6042242	6042242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs114090343		P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	155	594	1	ENST00000265849.7:c.379G>A	p.Ala127Thr	p.A127T	ENST00000265849	NM_000535.5	127	Gca/Aca																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	110	365	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																													NEWRECORD																																		
RAF1	5894	MSKCC	GRCh37	3	12633259	12633259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	265	560	2	ENST00000251849.4:c.1141G>A	p.Asp381Asn	p.D381N	ENST00000251849	NM_002880.3	381	Gac/Aac																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39923086	39923087	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	244	899	1	ENST00000378444.4:c.3621dup	p.Gln1208ThrfsTer8	p.Q1208Tfs*8	ENST00000378444	NM_001123385.1	1207	-/A																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5223131	5223131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	96	494	1	ENST00000357368.4:c.2672C>T	p.Thr891Met	p.T891M	ENST00000357368	NM_002850.3	891	aCg/aTg																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	195	774	8	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32907421	32907421	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	81	409	6	ENST00000380152.3:c.1813delA	p.Ile605TyrfsTer9	p.I605Yfs*9	ENST00000380152		602	ggA/gg																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106508539	106508539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	18	157	0	ENST00000359195.3:c.533G>A	p.Arg178His	p.R178H	ENST00000359195	NM_002649.2	178	cGt/cAt																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11190702	11190702	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	109	573	0	ENST00000361445.4:c.5497A>G	p.Thr1833Ala	p.T1833A	ENST00000361445	NM_004958.3	1833	Acc/Gcc																																													NEWRECORD																																		
BCL10	8915	MSKCC	GRCh37	1	85736523	85736523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	219	850	0	ENST00000370580.1:c.124C>T	p.Arg42Cys	p.R42C	ENST00000370580	NM_003921.4	42	Cgt/Tgt																																													NEWRECORD																																		
FGF19	9965	MSKCC	GRCh37	11	69518419	69518419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			42	10	40	0	ENST00000294312.3:c.226G>A	p.Ala76Thr	p.A76T	ENST00000294312	NM_005117.2	76	Gcg/Acg																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	416900	416900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	111	635	0	ENST00000399788.2:c.3650G>A	p.Arg1217Gln	p.R1217Q	ENST00000399788	NM_001042603.1	1217	cGg/cAg																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18747464	18747464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	70	341	0	ENST00000266497.5:c.3925G>A	p.Val1309Met	p.V1309M	ENST00000266497		1309	Gtg/Atg																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28908197	28908197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	182	583	0	ENST00000282397.4:c.2558C>T	p.Pro853Leu	p.P853L	ENST00000282397	NM_002019.4	853	cCt/cTt																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32972778	32972780	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	33	397	0	ENST00000380152.3:c.10131_10133del	p.Glu3377del	p.E3377del	ENST00000380152		3376	tcAGAa/tca																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95569708	95569708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	83	357	2	ENST00000343455.3:c.4025G>A	p.Arg1342His	p.R1342H	ENST00000343455	NM_177438.2	1342	cGc/cAc																																													NEWRECORD																																		
CD276	80381	MSKCC	GRCh37	15	73994658	73994658	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	71	471	1	ENST00000318443.5:c.142C>A	p.Leu48Met	p.L48M	ENST00000318443	NM_001024736.1	48	Ctg/Atg																																													NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	360031	360031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	177	734	0	ENST00000262320.3:c.1058G>A	p.Arg353His	p.R353H	ENST00000262320	NM_003502.3	353	cGc/cAc																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2100489	2100489	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	156	373	0	ENST00000219476.3:c.225+2T>C		p.X75_splice	ENST00000219476	NM_000548.3	75																																														NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89858446	89858446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	161	656	0	ENST00000389301.3:c.1114G>A	p.Val372Ile	p.V372I	ENST00000389301	NM_000135.2	372	Gtt/Att																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29657429	29657429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	155	546	0	ENST00000358273.4:c.5725G>A	p.Val1909Ile	p.V1909I	ENST00000358273	NM_001042492.2	1909	Gtc/Atc																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29416262	29416262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	118	672	2	ENST00000389048.3:c.4691C>T	p.Ala1564Val	p.A1564V	ENST00000389048	NM_004304.4	1564	gCc/gTc																																													NEWRECORD																																		
ICOSLG	23308	MSKCC	GRCh37	21	45651277	45651277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	179	759	1	ENST00000407780.3:c.748G>A	p.Gly250Ser	p.G250S	ENST00000407780	NM_001283052.1	250	Ggc/Agc																																													NEWRECORD																																		
SHQ1	55164	MSKCC	GRCh37	3	72897395	72897395	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	87	627	0	ENST00000325599.8:c.97T>C	p.Phe33Leu	p.F33L	ENST00000325599	NM_018130.2	33	Ttc/Ctc																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153251949	153251949	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	146	576	0	ENST00000281708.4:c.1057delA	p.Ser353ValfsTer24	p.S353Vfs*24	ENST00000281708	NM_033632.3	353	Agt/gt																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67592115	67592115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	156	461	1	ENST00000274335.5:c.1931G>A	p.Gly644Asp	p.G644D	ENST00000274335		644	gGc/gAc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175781	112175794	+	frameshift_variant	Frame_Shift_Del	DEL	CAGATGGATTTTCT	CAGATGGATTTTCT	-			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	70	292	0	ENST00000257430.4:c.4490_4503del	p.Pro1497LeufsTer12	p.P1497Lfs*12	ENST00000257430	NM_000038.5	1497	cCAGATGGATTTTCT/c																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149516579	149516579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	135	710	1	ENST00000261799.4:c.32C>T	p.Ala11Val	p.A11V	ENST00000261799	NM_002609.3	11	gCc/gTc																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152129324	152129324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	77	475	1	ENST00000206249.3:c.277G>A	p.Gly93Ser	p.G93S	ENST00000206249	NM_000125.3	93	Ggc/Agc																																													NEWRECORD																																		
NTRK2	4915	MSKCC	GRCh37	9	87563519	87563519	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	75	346	0	ENST00000277120.3:c.1907T>C	p.Met636Thr	p.M636T	ENST00000277120		636	aTg/aCg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139417466	139417466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	155	608	1	ENST00000277541.6:c.578G>A	p.Gly193Asp	p.G193D	ENST00000277541	NM_017617.3	193	gGc/gAc																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123202426	123202426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	62	563	1	ENST00000218089.9:c.2278C>T	p.Arg760Cys	p.R760C	ENST00000218089	NM_001042749.1	760	Cgt/Tgt																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106513002	106513002	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	343	374	0	ENST00000359195.3:c.2016C>A	p.Tyr672Ter	p.Y672*	ENST00000359195	NM_002649.2	672	taC/taA																																													NEWRECORD																																		
FYN	2534	MSKCC	GRCh37	6	112017602	112017602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	271	718	0	ENST00000368678.4:c.911C>T	p.Ser304Phe	p.S304F	ENST00000368678		304	tCc/tTc																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106520072	106520072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	160	409	0	ENST00000359195.3:c.2500C>T	p.His834Tyr	p.H834Y	ENST00000359195	NM_002649.2	834	Cat/Tat																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101521	27101523	+	frameshift_variant	Frame_Shift_Del	DEL	TAG	TAG	AA			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	344	951	1	ENST00000324856.7:c.4803_4805delinsAA	p.Ser1602ThrfsTer10	p.S1602Tfs*10	ENST00000324856	NM_006015.4	1601	ccTAGc/ccAAc																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162746014	162746014	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	208	526	0	ENST00000367921.3:c.2137A>G	p.Thr713Ala	p.T713A	ENST00000367921	NM_006182.2	713	Aca/Gca																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	430169	430169	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	200	506	0	ENST00000399788.2:c.2533C>T	p.Gln845Ter	p.Q845*	ENST00000399788	NM_001042603.1	845	Caa/Taa																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46245553	46245553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	392	453	1	ENST00000334344.6:c.3647C>T	p.Thr1216Met	p.T1216M	ENST00000334344	NM_152641.2	1216	aCg/aTg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49438234	49438234	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	655	838	0	ENST00000301067.7:c.5035G>T	p.Glu1679Ter	p.E1679*	ENST00000301067	NM_003482.3	1679	Gag/Tag																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68849535	68849535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	312	820	0	ENST00000261769.5:c.1438G>A	p.Val480Met	p.V480M	ENST00000261769	NM_004360.3	480	Gtg/Atg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579592	7579592	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	515	648	0	ENST00000269305.4:c.97-2A>T		p.X33_splice	ENST00000269305	NM_001126112.2	33																																														NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50920465	50920465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	320	702	0	ENST00000440232.2:c.3157C>A	p.Arg1053Ser	p.R1053S	ENST00000440232	NM_002691.3	1053	Cgc/Agc																																													NEWRECORD																																		
CTLA4	1493	MSKCC	GRCh37	2	204735398	204735398	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	143	428	0	ENST00000302823.3:c.199A>G	p.Thr67Ala	p.T67A	ENST00000302823	NM_005214.4	67	Act/Gct																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225362486	225362486	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	362	565	0	ENST00000264414.4:c.1691A>T	p.Tyr564Phe	p.Y564F	ENST00000264414	NM_003590.4	564	tAt/tTt																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225362490	225362491	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	358	585	0	ENST00000264414.4:c.1686dup	p.Phe563IlefsTer6	p.F563Ifs*6	ENST00000264414	NM_003590.4	562	-/A																																													NEWRECORD																																		
DROSHA	29102	MSKCC	GRCh37	5	31526379	31526379	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1310	402	1255	0	ENST00000344624.3:c.661del	p.Ser221ProfsTer5	p.S221Pfs*5	ENST00000344624		221	Tcc/cc																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38945060	38945060	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	217	659	1	ENST00000357387.3:c.4744C>T	p.Gln1582Ter	p.Q1582*	ENST00000357387	NM_152756.3	1582	Caa/Taa																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128852188	128852188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	729	997	6	ENST00000249373.3:c.2260G>A	p.Ala754Thr	p.A754T	ENST00000249373	NM_005631.4	754	Gcc/Acc																																													NEWRECORD																																		
WHSC1L1	54904	MSKCC	GRCh37	8	38189051	38189051	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	336	866	1	ENST00000317025.8:c.963G>A	p.Trp321Ter	p.W321*	ENST00000317025	NM_023034.1	321	tgG/tgA																																													NEWRECORD																																		
RXRA	6256	MSKCC	GRCh37	9	137321044	137321044	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	586	775	0	ENST00000481739.1:c.1001G>C	p.Arg334Pro	p.R334P	ENST00000481739	NM_002957.4	334	cGg/cCg																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3828126	3828126	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	49	423	0	ENST00000262367.5:c.1999G>T	p.Glu667Ter	p.E667*	ENST00000262367	NM_004380.2	667	Gaa/Taa																																													NEWRECORD																																		
NUP93	9688	MSKCC	GRCh37	16	56839524	56839524	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	49	416	0	ENST00000308159.5:c.469G>C	p.Asp157His	p.D157H	ENST00000308159	NM_014669.4	157	Gac/Cac																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577530	7577533	+	frameshift_variant	Frame_Shift_Ins	INS	TGGG	TGGG	AGGGA			P-0014520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	100	528	0	ENST00000269305.4:c.748_751delinsTCCCT	p.Pro250SerfsTer14	p.P250Sfs*14	ENST00000269305	NM_001126112.2	250	CCCAtc/TCCCTtc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	67	363	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	55	353	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372347	55372347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	64	295	2	ENST00000297316.4:c.1037C>T	p.Thr346Met	p.T346M	ENST00000297316	NM_022454.3	346	aCg/aTg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139391095	139391095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	45	322	0	ENST00000277541.6:c.7096C>T	p.Gln2366Ter	p.Q2366*	ENST00000277541	NM_017617.3	2366	Cag/Tag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175410	112175411	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	64	355	1	ENST00000257430.4:c.4120dup	p.Glu1374GlyfsTer12	p.E1374Gfs*12	ENST00000257430	NM_000038.5	1373	-/G																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	327	725	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48878144	48878144	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	93	245	0	ENST00000267163.4:c.96C>A	p.Asp32Glu	p.D32E	ENST00000267163	NM_000321.2	32	gaC/gaA																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187522461	187522461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	306	790	0	ENST00000441802.2:c.11602G>T	p.Val3868Phe	p.V3868F	ENST00000441802	NM_005245.3	3868	Gtc/Ttc																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151868393	151868393	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	67	643	0	ENST00000262189.6:c.9409C>T	p.Gln3137Ter	p.Q3137*	ENST00000262189	NM_170606.2	3137	Cag/Tag																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0004295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	71	155	0	ENST00000346208.3:c.1299_1300dupCC	p.His434ProfsTer42	p.H434Pfs*42	ENST00000346208		433	cac/caCCc																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212587144	212587144	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	129	323	1	ENST00000342788.4:c.857G>T	p.Gly286Val	p.G286V	ENST00000342788	NM_005235.2	286	gGa/gTa																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152415531	152415531	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	182	361	0	ENST00000206249.3:c.1381T>G	p.Phe461Val	p.F461V	ENST00000206249	NM_000125.3	461	Ttt/Gtt																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118377363	118377363	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0004295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	67	180	0	ENST00000534358.1:c.10754+2T>C		p.X3585_splice	ENST00000534358	NM_005933.3	3585																																														NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32910675	32910675	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	165	558	0	ENST00000380152.3:c.2183A>T	p.Asp728Val	p.D728V	ENST00000380152		728	gAt/gTt																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68842626	68842627	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	153	366	0	ENST00000261769.5:c.566dupT	p.Tyr190LeufsTer9	p.Y190Lfs*9	ENST00000261769	NM_004360.3	188	gtt/gTtt																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63851663	63851664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	321	449	0	ENST00000279873.7:c.2442dup	p.Glu815ArgfsTer12	p.E815Rfs*12	ENST00000279873	NM_032199.2	814	tta/ttAa																																													NEWRECORD																																		
CDK4	1019	MSKCC	GRCh37	12	58143258	58143258	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	160	441	0	ENST00000257904.6:c.662A>G	p.Asp221Gly	p.D221G	ENST00000257904	NM_000075.3	221	gAc/gGc																																													NEWRECORD																																		
ALOX12B	242	MSKCC	GRCh37	17	7978914	7978915	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GAGCTCTCCC			P-0012669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			374	114	566	0	ENST00000319144.4:c.1643_1652dup	p.Phe553GlufsTer6	p.F553Efs*6	ENST00000319144	NM_001139.2	551	tca/tcGGGAGAGCTCa																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151845261	151845261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	191	619	0	ENST00000262189.6:c.13751G>A	p.Arg4584Gln	p.R4584Q	ENST00000262189	NM_170606.2	4584	cGg/cAg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	43	370	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0009009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	61	359	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70339254	70339254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	98	284	0	ENST00000374080.3:c.131G>A	p.Gly44Asp	p.G44D	ENST00000374080		44	gGt/gAt																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162743362	162743362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	85	379	0	ENST00000367921.3:c.1832G>A	p.Arg611Gln	p.R611Q	ENST00000367921	NM_006182.2	611	cGa/cAa																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156851271	156851271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	57	419	1	ENST00000524377.1:c.2228G>A	p.Gly743Glu	p.G743E	ENST00000524377	NM_002529.3	743	gGa/gAa																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143324099	143324099	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	39	263	0	ENST00000262992.4:c.364C>G	p.His122Asp	p.H122D	ENST00000262992	NM_001101669.1	122	Cat/Gat																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153244097	153244097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	62	335	1	ENST00000281708.4:c.2060G>T	p.Gly687Val	p.G687V	ENST00000281708	NM_033632.3	687	gGg/gTg																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	41961399	41961399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1300	118	649	0	ENST00000219905.7:c.307C>T	p.Arg103Cys	p.R103C	ENST00000219905	NM_001164273.1	103	Cgc/Tgc																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70120345	70120346	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1180	96	674	0	ENST00000245479.2:c.1348dup	p.Ser450PhefsTer128	p.S450Ffs*128	ENST00000245479	NM_000346.3	449	-/T																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16258907	16258907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			465	299	525	2	ENST00000375759.3:c.6172G>A	p.Ala2058Thr	p.A2058T	ENST00000375759	NM_015001.2	2058	Gcc/Acc																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29754943	29754943	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	21	350	0	ENST00000389048.3:c.992A>G	p.His331Arg	p.H331R	ENST00000389048	NM_004304.4	331	cAc/cGc																																													NEWRECORD																																		
XPO1	7514	MSKCC	GRCh37	2	61720175	61720175	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			569	126	533	0	ENST00000401558.2:c.1259T>C	p.Met420Thr	p.M420T	ENST00000401558	NM_003400.3	420	aTg/aCg																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212251730	212251730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			321	209	500	2	ENST00000342788.4:c.3329C>A	p.Thr1110Asn	p.T1110N	ENST00000342788	NM_005235.2	1110	aCc/aAc																																													NEWRECORD																																		
SHQ1	55164	MSKCC	GRCh37	3	72873620	72873620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			491	298	638	1	ENST00000325599.8:c.682G>A	p.Ala228Thr	p.A228T	ENST00000325599	NM_018130.2	228	Gcc/Acc																																													NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1801158	1801158	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	182	397	0	ENST00000260795.2:c.287T>A	p.Val96Glu	p.V96E	ENST00000260795		96	gTg/gAg																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55961742	55961742	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			370	288	600	1	ENST00000263923.4:c.2817+2T>C		p.X939_splice	ENST00000263923	NM_002253.2	939																																														NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1278883	1278883	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	185	445	0	ENST00000310581.5:c.2159T>C	p.Ile720Thr	p.I720T	ENST00000310581	NM_198253.2	720	aTc/aCc																																													NEWRECORD																																		
CSF1R	1436	MSKCC	GRCh37	5	149457728	149457728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	240	453	0	ENST00000286301.3:c.676G>A	p.Ala226Thr	p.A226T	ENST00000286301	NM_005211.3	226	Gcc/Acc																																													NEWRECORD																																		
HIST1H1C	3006	MSKCC	GRCh37	6	26056427	26056427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	218	385	0	ENST00000343677.2:c.230A>G	p.Asn77Ser	p.N77S	ENST00000343677	NM_005319.3	77	aAc/aGc																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	150005375	150005375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			390	276	610	3	ENST00000253339.5:c.850G>A	p.Val284Ile	p.V284I	ENST00000253339		284	Gta/Ata																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152201828	152201828	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			615	79	580	1	ENST00000206249.3:c.682A>G	p.Thr228Ala	p.T228A	ENST00000206249	NM_000125.3	228	Acc/Gcc																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116339647	116339647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	54	384	0	ENST00000397752.3:c.509G>A	p.Ser170Asn	p.S170N	ENST00000397752	NM_000245.2	170	aGc/aAc																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116415076	116415076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			451	272	550	1	ENST00000397752.3:c.3170C>T	p.Ala1057Val	p.A1057V	ENST00000397752	NM_000245.2	1057	gCt/gTt																																													NEWRECORD																																		
EZH2	2146	MSKCC	GRCh37	7	148523672	148523672	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	276	431	0	ENST00000320356.2:c.781A>G	p.Thr261Ala	p.T261A	ENST00000320356	NM_004456.4	261	Acc/Gcc																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145742886	145742886	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			242	16	210	0	ENST00000428558.2:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000428558	NM_004260.3	42	tAc/tGc																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133756042	133756042	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	192	388	1	ENST00000318560.5:c.1669G>T	p.Gly557Ter	p.G557*	ENST00000318560	NM_005157.4	557	Gga/Tga																																													NEWRECORD																																		
FGF3	2248	MSKCC	GRCh37	11	69631177	69631177	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	221	524	0	ENST00000334134.2:c.235A>G	p.Thr79Ala	p.T79A	ENST00000334134	NM_005247.2	79	Acg/Gcg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108124655	108124655	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			405	250	616	0	ENST00000278616.4:c.2013A>G	p.Ile671Met	p.I671M	ENST00000278616	NM_000051.3	671	atA/atG																																													NEWRECORD																																		
RAD52	5893	MSKCC	GRCh37	12	1023201	1023201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	250	477	0	ENST00000358495.3:c.1054G>A	p.Ala352Thr	p.A352T	ENST00000358495	NM_134424.2	352	Gcc/Acc																																													NEWRECORD																																		
ETV6	2120	MSKCC	GRCh37	12	12037514	12037514	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			214	123	232	0	ENST00000396373.4:c.1145A>G	p.Asn382Ser	p.N382S	ENST00000396373	NM_001987.4	382	aAc/aGc																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32893318	32893318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	347	677	0	ENST00000380152.3:c.172G>A	p.Glu58Lys	p.E58K	ENST00000380152		58	Gaa/Aaa																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32953620	32953620	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	219	360	0	ENST00000380152.3:c.8921T>C	p.Ile2974Thr	p.I2974T	ENST00000380152		2974	aTt/aCt																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73335810	73335810	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183862178		P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			511	171	432	0	ENST00000377767.4:c.2485C>T	p.Arg829Cys	p.R829C	ENST00000377767	NM_014953.3	829	Cgt/Tgt																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103514517	103514517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			353	243	440	0	ENST00000355739.4:c.1018C>T	p.Pro340Ser	p.P340S	ENST00000355739	NM_000123.3	340	Cct/Tct																																													NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105243045	105243045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			110	427	445	0	ENST00000349310.3:c.238T>C	p.Trp80Arg	p.W80R	ENST00000349310	NM_001014432.1	80	Tgg/Cgg																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99250898	99250898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	270	511	0	ENST00000268035.6:c.202G>A	p.Glu68Lys	p.E68K	ENST00000268035	NM_000875.3	68	Gag/Aag																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23646199	23646199	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			611	68	598	0	ENST00000261584.4:c.1668A>T	p.Leu556Phe	p.L556F	ENST00000261584	NM_024675.3	556	ttA/ttT																																													NEWRECORD																																		
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			505	301	539	1	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																													NEWRECORD																																		
PIK3C3	5289	MSKCC	GRCh37	18	39629513	39629513	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			399	307	570	0	ENST00000262039.4:c.2207C>G	p.Thr736Ser	p.T736S	ENST00000262039	NM_002647.2	736	aCc/aGc																																													NEWRECORD																																		
GNA11	2767	MSKCC	GRCh37	19	3113388	3113388	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	276	587	0	ENST00000078429.4:c.382T>C	p.Tyr128His	p.Y128H	ENST00000078429	NM_002067.2	128	Tac/Cac																																													NEWRECORD																																		
MAP2K2	5605	MSKCC	GRCh37	19	4094474	4094474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			308	197	432	0	ENST00000262948.5:c.1069C>T	p.Arg357Trp	p.R357W	ENST00000262948	NM_030662.3	357	Cgg/Tgg																																													NEWRECORD																																		
PIK3R2	5296	MSKCC	GRCh37	19	18278074	18278074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			362	187	438	0	ENST00000222254.8:c.1694C>T	p.Pro565Leu	p.P565L	ENST00000222254	NM_005027.3	565	cCg/cTg																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41743996	41743996	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	238	582	0	ENST00000301178.4:c.931T>C	p.Cys311Arg	p.C311R	ENST00000301178	NM_021913.4	311	Tgc/Cgc																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36164725	36164725	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			317	196	459	0	ENST00000300305.3:c.1150C>A	p.Pro384Thr	p.P384T	ENST00000300305		384	Ccc/Acc																																													NEWRECORD																																		
U2AF1	7307	MSKCC	GRCh37	21	44513243	44513243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200044775		P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			149	67	201	0	ENST00000291552.4:c.692C>T	p.Ser231Leu	p.S231L	ENST00000291552	NM_006758.2	231	tCg/tTg																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			62	330	309	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143044482	143044482	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			676	67	541	0	ENST00000262992.4:c.1980del	p.Leu661Ter	p.L661*	ENST00000262992	NM_001101669.1	660	ggG/gg																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	150005427	150005428	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			558	77	521	0	ENST00000253339.5:c.797dup	p.Ser267PhefsTer48	p.S267Ffs*48	ENST00000253339		266	cct/ccCt																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			242	23	258	0	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			295	182	469	1	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49447773	49447773	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	207	332	0	ENST00000301067.7:c.661del	p.Ala221LeufsTer40	p.A221Lfs*40	ENST00000301067	NM_003482.3	221	Gct/ct																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73355942	73355942	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			359	224	486	0	ENST00000377767.4:c.29del	p.Lys10ArgfsTer7	p.K10Rfs*7	ENST00000377767	NM_014953.3	10	aAg/ag																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3777898	3777898	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	249	648	0	ENST00000262367.5:c.7150del	p.His2384ThrfsTer12	p.H2384Tfs*12	ENST00000262367	NM_004380.2	2384	Cac/ac																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	212	534	0	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0009870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	275	605	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	585	415	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	26	86	0	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106649	27106649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	165	362	0	ENST00000324856.7:c.6260G>A	p.Gly2087Glu	p.G2087E	ENST00000324856	NM_006015.4	2087	gGa/gAa																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971101	21971102	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTC			P-0009870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	17	140	0	ENST00000304494.5:c.256_257insGACGGCGCGGAGCCCAACTGCGCCGACCCCGCCACTCTCACCCGACCCGTGCACGACGCTG	p.Ala86GlyfsTer54	p.A86Gfs*54	ENST00000304494	NM_000077.4	86	gcc/gGACGGCGCGGAGCCCAACTGCGCCGACCCCGCCACTCTCACCCGACCCGTGCACGACGCTGcc																																													NEWRECORD																																		
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	160	457	2	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	164	535	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	150	589	0	ENST00000257430.4:c.4393_4394dupAG	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	202	778	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	156	456	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																													NEWRECORD																																		
STAT5A	6776	MSKCC	GRCh37	17	40453398	40453399	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs773909918		P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	126	1258	1	ENST00000345506.4:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000345506	NM_003152.3	365	-/C																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23646981	23646981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs587776408		P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	183	690	0	ENST00000261584.4:c.886del	p.Met296Ter	p.M296*	ENST00000261584	NM_024675.3	296	Atg/tg																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133219487	133219487	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	166	804	1	ENST00000320574.5:c.4647del	p.Lys1550AsnfsTer12	p.K1550Nfs*12	ENST00000320574	NM_006231.2	1549	ccC/cc																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110436713	110436713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	159	602	5	ENST00000375856.3:c.1688C>T	p.Ala563Val	p.A563V	ENST00000375856	NM_003749.2	563	gCg/gTg																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86564408	86564408	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	55	591	0	ENST00000274376.6:c.144del	p.Tyr49IlefsTer24	p.Y49Ifs*24	ENST00000274376	NM_002890.2	47	gCc/gc																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89499363	89499363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	43	550	0	ENST00000336596.2:c.2538delC	p.Met847TrpfsTer10	p.M847Wfs*10	ENST00000336596	NM_005233.5	845	Ccc/cc																																													NEWRECORD																																		
MLH1	4292	MSKCC	GRCh37	3	37056036	37056036	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	102	454	1	ENST00000231790.2:c.790+1G>A		p.X264_splice	ENST00000231790	NM_000249.3	264																																														NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47165282	47165283	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	147	540	2	ENST00000409792.3:c.843dupA	p.Glu282ArgfsTer9	p.E282Rfs*9	ENST00000409792	NM_014159.6	281	-/A																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533942	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	57	272	0	ENST00000307078.5:c.1212_1215del	p.Glu405AlafsTer52	p.E405Afs*52	ENST00000307078	NM_004655.3	404	agAGAG/ag																																													NEWRECORD																																		
TNFRSF14	8764	MSKCC	GRCh37	1	2494324	2494324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143033733		P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	153	623	1	ENST00000355716.4:c.715G>A	p.Val239Ile	p.V239I	ENST00000355716	NM_003820.2	239	Gtc/Atc																																													NEWRECORD																																		
MYOD1	4654	MSKCC	GRCh37	11	17741372	17741372	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	169	643	0	ENST00000250003.3:c.43G>C	p.Ala15Pro	p.A15P	ENST00000250003	NM_002478.4	15	Gcc/Ccc																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57861952	57861952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	204	969	1	ENST00000228682.2:c.1253G>A	p.Arg418Gln	p.R418Q	ENST00000228682	NM_005269.2	418	cGg/cAg																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2134526	2134526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	137	677	1	ENST00000219476.3:c.4303G>A	p.Glu1435Lys	p.E1435K	ENST00000219476	NM_000548.3	1435	Gaa/Aaa																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3828176	3828178	+	inframe_deletion	In_Frame_Del	DEL	TAT	TAT	-			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	103	430	0	ENST00000262367.5:c.1947_1949del	p.Glu649_Tyr650delinsAsp	p.E649_Y650delinsD	ENST00000262367	NM_004380.2	649	gaATAt/gat																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63553974	63553975	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	201	763	0	ENST00000307078.5:c.764_765del	p.Leu255GlnfsTer13	p.L255Qfs*13	ENST00000307078	NM_004655.3	255	cTG/c																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119780	70119781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	75	658	0	ENST00000245479.2:c.788dupG	p.Arg264GlnfsTer32	p.R264Qfs*32	ENST00000245479	NM_000346.3	261	gag/gaGg																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78897406	78897406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	138	709	0	ENST00000306801.3:c.2741C>T	p.Ala914Val	p.A914V	ENST00000306801	NM_020761.2	914	gCg/gTg																																													NEWRECORD																																		
TCF3	6929	MSKCC	GRCh37	19	1622415	1622415	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	46	727	2	ENST00000344749.5:c.550-1G>T		p.X184_splice	ENST00000344749	NM_001136139.2	184																																														NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42797321	42797321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	102	665	0	ENST00000575354.2:c.3683C>T	p.Thr1228Ile	p.T1228I	ENST00000575354	NM_015125.3	1228	aCa/aTa																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30713742	30713742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	118	446	0	ENST00000359013.4:c.1142G>A	p.Arg381Gln	p.R381Q	ENST00000359013	NM_001024847.2	381	cGg/cAg																																													NEWRECORD																																		
MLH1	4292	MSKCC	GRCh37	3	37090456	37090483	+	frameshift_variant	Frame_Shift_Del	DEL	ATTCCATCCGGAAGCAGTACATATCTGA	ATTCCATCCGGAAGCAGTACATATCTGA	-			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	124	594	0	ENST00000231790.2:c.2051_2078del	p.Tyr684TrpfsTer90	p.Y684Wfs*90	ENST00000231790	NM_000249.3	684	tATTCCATCCGGAAGCAGTACATATCTGAg/tg																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47163356	47163356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	154	660	0	ENST00000409792.3:c.2770G>A	p.Ala924Thr	p.A924T	ENST00000409792	NM_014159.6	924	Gca/Aca																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143033782	143033782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	182	573	1	ENST00000262992.4:c.2189C>A	p.Pro730His	p.P730H	ENST00000262992	NM_001101669.1	730	cCt/cAt																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56171018	56171018	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	121	459	0	ENST00000399503.3:c.1850del	p.Gly617GlufsTer39	p.G617Efs*39	ENST00000399503	NM_005921.1	616	Ggg/gg																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56189357	56189357	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	204	648	2	ENST00000399503.3:c.4390-1G>T		p.X1464_splice	ENST00000399503	NM_005921.1	1464																																														NEWRECORD																																		
HIST1H1C	3006	MSKCC	GRCh37	6	26056292	26056292	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	147	543	0	ENST00000343677.2:c.365A>T	p.Lys122Met	p.K122M	ENST00000343677	NM_005319.3	122	aAg/aTg																																													NEWRECORD																																		
DAXX	1616	MSKCC	GRCh37	6	33289272	33289272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	134	514	0	ENST00000374542.5:c.280C>T	p.Arg94Cys	p.R94C	ENST00000374542	NM_001141970.1	94	Cgt/Tgt																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145738654	145738654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	68	345	0	ENST00000428558.2:c.2410C>T	p.Arg804Trp	p.R804W	ENST00000428558	NM_004260.3	804	Cgg/Tgg																																													NEWRECORD																																		
TGFBR1	7046	MSKCC	GRCh37	9	101900325	101900325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	173	666	1	ENST00000374994.4:c.759G>A	p.Met253Ile	p.M253I	ENST00000374994	NM_004612.2	253	atG/atA																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133760379	133760379	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	49	604	0	ENST00000318560.5:c.2702C>A	p.Pro901His	p.P901H	ENST00000318560	NM_005157.4	901	cCc/cAc																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133760982	133760982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	234	820	0	ENST00000318560.5:c.3305C>T	p.Ala1102Val	p.A1102V	ENST00000318560	NM_005157.4	1102	gCg/gTg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139395047	139395047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	131	578	0	ENST00000277541.6:c.5891C>T	p.Pro1964Leu	p.P1964L	ENST00000277541	NM_017617.3	1964	cCg/cTg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139407554	139407554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	190	749	0	ENST00000277541.6:c.2386G>A	p.Ala796Thr	p.A796T	ENST00000277541	NM_017617.3	796	Gcg/Acg																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76939396	76939396	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	282	472	3	ENST00000373344.5:c.1352C>A	p.Ala451Asp	p.A451D	ENST00000373344	NM_000489.3	451	gCt/gAt																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0007754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	66	389	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	26	233	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0007754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	67	466	1	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81339478	81339478	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	50	689	0	ENST00000222390.5:c.1526T>G	p.Val509Gly	p.V509G	ENST00000222390	NM_000601.4	509	gTt/gGt																																													NEWRECORD																																		
WT1	7490	MSKCC	GRCh37	11	32421508	32421508	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	49	226	0	ENST00000332351.3:c.1084T>C	p.Phe362Leu	p.F362L	ENST00000332351	NM_024426.4	362	Ttc/Ctc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175522	112175534	+	frameshift_variant	Frame_Shift_Del	DEL	AGTGGAATGGTAA	AGTGGAATGGTAA	-			P-0007754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	57	340	0	ENST00000257430.4:c.4231_4243delAGTGGAATGGTAA	p.Ser1411ValfsTer4	p.S1411Vfs*4	ENST00000257430	NM_000038.5	1411	AGTGGAATGGTAAgt/gt																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47044727	47044728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	75	233	0	ENST00000329236.7:c.1894dup	p.Ser632LysfsTer10	p.S632Kfs*10	ENST00000329236	NM_001204466.1	631	-/A																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	96	208	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	50	291	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	61	319	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98220389	98220389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	53	397	2	ENST00000331920.6:c.3074G>A	p.Arg1025His	p.R1025H	ENST00000331920	NM_000264.3	1025	cGc/cAc																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	86	481	1	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27088788	27088788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	48	340	2	ENST00000324856.7:c.2402del	p.Gly801ValfsTer32	p.G801Vfs*32	ENST00000324856	NM_006015.4	799	caG/ca																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	40	320	3	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	96	596	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32914070	32914070	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1473	126	674	1	ENST00000380152.3:c.5583delA	p.Val1862Ter	p.V1862*	ENST00000380152		1860	Aaa/aa																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	58	423	2	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023018	27023018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	17	39	0	ENST00000324856.7:c.124G>A	p.Ala42Thr	p.A42T	ENST00000324856	NM_006015.4	42	Gcg/Acg																																													NEWRECORD																																		
RAD54L	8438	MSKCC	GRCh37	1	46740345	46740345	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138693255		P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	82	329	0	ENST00000371975.4:c.1825C>T	p.Arg609Ter	p.R609*	ENST00000371975	NM_003579.3	609	Cga/Tga																																													NEWRECORD																																		
FAM46C	54855	MSKCC	GRCh37	1	118165837	118165837	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	58	270	0	ENST00000369448.3:c.347T>A	p.Leu116His	p.L116H	ENST00000369448	NM_017709.3	116	cTt/cAt																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	213403209	213403209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	56	418	0	ENST00000342788.4:c.46G>A	p.Ala16Thr	p.A16T	ENST00000342788	NM_005235.2	16	Gcg/Acg																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52623241	52623241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	49	275	0	ENST00000394830.3:c.2810C>T	p.Ala937Val	p.A937V	ENST00000394830	NM_018313.4	937	gCt/gTt																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134911460	134911460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	37	311	0	ENST00000398015.3:c.1925G>A	p.Gly642Asp	p.G642D	ENST00000398015	NM_004441.4	642	gGc/gAc																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86645099	86645099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	66	277	1	ENST00000274376.6:c.1171C>T	p.Arg391Trp	p.R391W	ENST00000274376	NM_002890.2	391	Cgg/Tgg																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32170177	32170177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	50	310	0	ENST00000375023.3:c.3431G>A	p.Gly1144Asp	p.G1144D	ENST00000375023	NM_004557.3	1144	gGc/gAc																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157522274	157522274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	67	377	0	ENST00000346085.5:c.4546G>A	p.Val1516Ile	p.V1516I	ENST00000346085	NM_020732.3	1516	Gtc/Atc																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157525096	157525096	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	54	299	0	ENST00000346085.5:c.4991A>C	p.Asp1664Ala	p.D1664A	ENST00000346085	NM_020732.3	1664	gAt/gCt																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98239140	98239140	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	44	311	1	ENST00000331920.6:c.1504-1G>T		p.X502_splice	ENST00000331920	NM_000264.3	502																																														NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133729602	133729602	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	62	367	0	ENST00000318560.5:c.231T>A	p.Asp77Glu	p.D77E	ENST00000318560	NM_005157.4	77	gaT/gaA																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70332170	70332170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	64	582	0	ENST00000373644.4:c.75C>A	p.Ser25Arg	p.S25R	ENST00000373644	NM_030625.2	25	agC/agA																																													NEWRECORD																																		
FGFR2	2263	MSKCC	GRCh37	10	123263382	123263382	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148672240		P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	56	308	0	ENST00000358487.5:c.1361C>T	p.Thr454Met	p.T454M	ENST00000358487	NM_000141.4	454	aCg/aTg																																													NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64136271	64136271	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	69	328	0	ENST00000334205.4:c.1428+2T>C		p.X476_splice	ENST00000334205	NM_003942.2	476																																														NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42041590	42041590	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1299	126	679	1	ENST00000219905.7:c.5785C>T	p.Gln1929Ter	p.Q1929*	ENST00000219905	NM_001164273.1	1929	Cag/Tag																																													NEWRECORD																																		
MAP2K1	5604	MSKCC	GRCh37	15	66679701	66679701	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	46	406	0	ENST00000307102.5:c.16C>A	p.Pro6Thr	p.P6T	ENST00000307102	NM_002755.3	6	Ccg/Acg																																													NEWRECORD																																		
IDH2	3418	MSKCC	GRCh37	15	90631629	90631629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	59	300	1	ENST00000330062.3:c.640G>A	p.Ala214Thr	p.A214T	ENST00000330062	NM_002168.2	214	Gca/Aca																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	10274258	10274258	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	10	119	0	ENST00000330684.3:c.11T>C	p.Val4Ala	p.V4A	ENST00000330684	NM_001134407.1	4	gTg/gCg																																													NEWRECORD																																		
SOCS1	8651	MSKCC	GRCh37	16	11349011	11349011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	33	206	1	ENST00000332029.2:c.325C>T	p.Arg109Trp	p.R109W	ENST00000332029	NM_003745.1	109	Cgg/Tgg																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68842472	68842472	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	48	246	0	ENST00000261769.5:c.531+2T>C		p.X177_splice	ENST00000261769	NM_004360.3	177																																														NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15971268	15971268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	58	306	0	ENST00000268712.3:c.4681C>T	p.Arg1561Trp	p.R1561W	ENST00000268712	NM_006311.3	1561	Cgg/Tgg																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17118616	17118616	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112980409		P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	63	362	0	ENST00000285071.4:c.1315G>A	p.Val439Met	p.V439M	ENST00000285071	NM_144997.5	439	Gtg/Atg																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10610604	10610604	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	48	280	0	ENST00000171111.5:c.106A>G	p.Thr36Ala	p.T36A	ENST00000171111	NM_203500.1	36	Act/Gct																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11138563	11138563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	53	420	0	ENST00000344626.4:c.3319T>C	p.Ser1107Pro	p.S1107P	ENST00000344626	NM_003072.3	1107	Tcc/Ccc																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15289931	15289931	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	66	421	0	ENST00000263388.2:c.3623A>C	p.Glu1208Ala	p.E1208A	ENST00000263388	NM_000435.2	1208	gAg/gCg																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50916766	50916766	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	63	491	0	ENST00000440232.2:c.2238C>G	p.Ser746Arg	p.S746R	ENST00000440232	NM_002691.3	746	agC/agG																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50918828	50918828	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	79	508	2	ENST00000440232.2:c.2698C>A	p.His900Asn	p.H900N	ENST00000440232	NM_002691.3	900	Cac/Aac																																													NEWRECORD																																		
ICOSLG	23308	MSKCC	GRCh37	21	45651293	45651293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	77	436	0	ENST00000407780.3:c.732G>T	p.Glu244Asp	p.E244D	ENST00000407780	NM_001283052.1	244	gaG/gaT																																													NEWRECORD																																		
ERG	2078	MSKCC	GRCh37	21	39755427	39755427	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	60	341	1	ENST00000288319.7:c.1338delT	p.Phe446LeufsTer59	p.F446Lfs*59	ENST00000288319	NM_182918.3	446	ttT/tt																																													NEWRECORD																																		
XRCC2	7516	MSKCC	GRCh37	7	152345768	152345769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	44	420	0	ENST00000359321.1:c.801dup	p.His268ThrfsTer11	p.H268Tfs*11	ENST00000359321	NM_005431.1	267	-/A																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59761147	59761147	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	80	351	0	ENST00000259008.2:c.3260del	p.Asn1087IlefsTer21	p.N1087Ifs*21	ENST00000259008	NM_032043.2	1087	aAt/at																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68863699	68863702	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	AAGT	AAGT	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	19	137	0	ENST00000261769.5:c.2439+5_2439+8del		p.X813_splice	ENST00000261769	NM_004360.3	813																																														NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114711299	114711301	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	79	365	0	ENST00000543371.1:c.318_320delCAT	p.Ile106del	p.I106del	ENST00000543371	NM_001198531.1	105	tTCAtc/ttc																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63554356	63554357	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	79	385	0	ENST00000307078.5:c.382_383del	p.Leu128ThrfsTer12	p.L128Tfs*12	ENST00000307078	NM_004655.3	128	TTa/a																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411812	63411813	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	48	319	0	ENST00000330258.3:c.1354dup	p.Glu452GlyfsTer8	p.E452Gfs*8	ENST00000330258	NM_152424.3	452	gaa/gGaa																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42796347	42796349	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	86	444	0	ENST00000575354.2:c.3001_3003del	p.Ser1001del	p.S1001del	ENST00000575354	NM_015125.3	999	cCCTcc/ccc																																													NEWRECORD																																		
SH2B3	10019	MSKCC	GRCh37	12	111856624	111856630	+	frameshift_variant	Frame_Shift_Del	DEL	CCGGGCC	CCGGGCC	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	32	186	0	ENST00000341259.2:c.685_691del	p.Gly229MetfsTer47	p.G229Mfs*47	ENST00000341259	NM_005475.2	225	cgCCGGGCC/cg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49438567	49438569	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	56	326	0	ENST00000301067.7:c.4921_4923del	p.Lys1641del	p.K1641del	ENST00000301067	NM_003482.3	1641	AAG/-																																													NEWRECORD																																		
CTLA4	1493	MSKCC	GRCh37	2	204736165	204736166	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	85	473	0	ENST00000302823.3:c.529dupT	p.Tyr177LeufsTer2	p.Y177Lfs*2	ENST00000302823	NM_005214.4	174	-/T																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10262139	10262139	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	74	548	3	ENST00000340748.4:c.2152delA	p.Met718CysfsTer59	p.M718Cfs*59	ENST00000340748		718	Atg/tg																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63533938	63533939	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	20	168	0	ENST00000307078.5:c.1214_1215dup	p.Gly406ArgfsTer53	p.G406Rfs*53	ENST00000307078	NM_004655.3	405	-/AG																																													NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91326110	91326110	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	75	335	0	ENST00000355112.3:c.2618del	p.Lys873ArgfsTer7	p.K873Rfs*7	ENST00000355112	NM_000057.2	872	Aaa/aa																																													NEWRECORD																																		
ID3	3399	MSKCC	GRCh37	1	23885643	23885643	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1383	110	515	0	ENST00000374561.5:c.275del	p.Pro92LeufsTer34	p.P92Lfs*34	ENST00000374561	NM_002167.4	92	cCt/ct																																													NEWRECORD																																		
FANCC	2176	MSKCC	GRCh37	9	97873817	97873817	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	64	372	2	ENST00000289081.3:c.1257del	p.Thr420ArgfsTer27	p.T420Rfs*27	ENST00000289081	NM_000136.2	419	ccC/cc																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56480325	56480326	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	58	326	0	ENST00000267101.3:c.437dup	p.Val147CysfsTer4	p.V147Cfs*4	ENST00000267101	NM_001982.3	144	-/G																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153245492	153245492	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	57	279	0	ENST00000281708.4:c.1699del	p.Asp567MetfsTer11	p.D567Mfs*11	ENST00000281708	NM_033632.3	567	Gat/at																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	28	299	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
MLH1	4292	MSKCC	GRCh37	3	37089028	37089028	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	48	556	0	ENST00000231790.2:c.1750G>C	p.Asp584His	p.D584H	ENST00000231790	NM_000249.3	584	Gac/Cac																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47098963	47098963	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	40	334	0	ENST00000409792.3:c.6311C>G	p.Ser2104Cys	p.S2104C	ENST00000409792	NM_014159.6	2104	tCt/tGt																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9520210	9520210	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	29	610	0	ENST00000353224.5:c.2059C>T	p.Gln687Ter	p.Q687*	ENST00000353224	NM_177990.2	687	Cag/Tag																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39933350	39933350	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	41	751	0	ENST00000378444.4:c.1249G>C	p.Asp417His	p.D417H	ENST00000378444	NM_001123385.1	417	Gac/Cac																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157502159	157502160	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	26	436	0	ENST00000346085.5:c.3192_3193insC	p.Asn1065GlnfsTer2	p.N1065Qfs*2	ENST00000346085	NM_020732.3	1064	-/C																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56152428	56152428	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	C	C	TT			P-0005526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	74	326	0	ENST00000399503.3:c.484delinsTT	p.Arg162LeufsTer2	p.R162Lfs*2	ENST00000399503	NM_005921.1	162	Cgt/TTgt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0000594-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	150	468	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0000594-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			671	291	327	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138409905	138409905	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000594-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			525	220	322	0	ENST00000289153.2:c.1973G>C	p.Arg658Thr	p.R658T	ENST00000289153	NM_006219.2	658	aGa/aCa																																													NEWRECORD																																		
CHEK2	11200	MSKCC	GRCh37	22	29092966	29092966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000594-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	109	264	0	ENST00000328354.6:c.1018G>A	p.Glu340Lys	p.E340K	ENST00000328354	NM_007194.3	340	Gaa/Aaa																																													NEWRECORD																																		
CBL	867	MSKCC	GRCh37	11	119168143	119168144	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0000594-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	122	278	0	ENST00000264033.4:c.2205_2206delTA	p.Tyr735Ter	p.Y735*	ENST00000264033	NM_005188.3	735	TAt/t																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000885-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			609	108	417	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000885-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	48	164	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56167736	56167736	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0000885-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	68	262	0	ENST00000399503.3:c.1302-1G>C		p.X434_splice	ENST00000399503	NM_005921.1	434																																														NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112154942	112154942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000885-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	57	290	1	ENST00000257430.4:c.1213C>T	p.Arg405Ter	p.R405*	ENST00000257430	NM_000038.5	405	Cga/Tga																																													NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64127730	64127730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000885-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			146	36	203	0	ENST00000334205.4:c.223C>T	p.Arg75Cys	p.R75C	ENST00000334205	NM_003942.2	75	Cgc/Tgc																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67473730	67473730	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000885-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	49	407	0	ENST00000327367.4:c.810C>G	p.Cys270Trp	p.C270W	ENST00000327367	NM_005902.3	270	tgC/tgG																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67479810	67479810	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863223746		P-0000885-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	64	447	1	ENST00000327367.4:c.1117C>T	p.Arg373Cys	p.R373C	ENST00000327367	NM_005902.3	373	Cgc/Tgc																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37879798	37879798	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000885-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			111	37	186	0	ENST00000269571.5:c.2093A>T	p.Glu698Val	p.E698V	ENST00000269571		698	gAg/gTg																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45375019	45375019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000885-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	61	308	0	ENST00000262160.6:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000262160	NM_005901.5	275	tGt/tAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112170782	112170782	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000885-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	72	484	0	ENST00000257430.4:c.1880del	p.Asn627ThrfsTer3	p.N627Tfs*3	ENST00000257430	NM_000038.5	626	acA/ac																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0002907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			503	1825	420	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974770	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCCGT			P-0002907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			110	61	215	0	ENST00000304494.5:c.52_57dup	p.Thr18_Ala19dup	p.T18_A19dup	ENST00000304494	NM_000077.4	18	-/ACGGCC																																													NEWRECORD																																		
MCL1	4170	MSKCC	GRCh37	1	150551772	150551772	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			72	49	64	0	ENST00000369026.2:c.235C>G	p.Pro79Ala	p.P79A	ENST00000369026	NM_021960.4	79	Ccg/Gcg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139412233	139412233	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	90	437	0	ENST00000277541.6:c.1412T>C	p.Ile471Thr	p.I471T	ENST00000277541	NM_017617.3	471	aTt/aCt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7576872	7576872	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			182	265	380	0	ENST00000269305.4:c.974del	p.Gly325GlufsTer20	p.G325Efs*20	ENST00000269305	NM_001126112.2	325	gGa/ga																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0013510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1122	55	711	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	80	937	4	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152332899	152332899	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	63	559	0	ENST00000206249.3:c.1205T>A	p.Leu402Gln	p.L402Q	ENST00000206249	NM_000125.3	402	cTa/cAa																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98209446	98209446	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	33	510	0	ENST00000331920.6:c.4092C>A	p.Tyr1364Ter	p.Y1364*	ENST00000331920	NM_000264.3	1364	taC/taA																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118373923	118373923	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	12	718	0	ENST00000534358.1:c.7316C>G	p.Thr2439Ser	p.T2439S	ENST00000534358	NM_005933.3	2439	aCt/aGt																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115109920	115109920	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	26	298	0	ENST00000257566.3:c.1958G>T	p.Ser653Ile	p.S653I	ENST00000257566	NM_016569.3	653	aGc/aTc																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061347	38061347	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	169	711	0	ENST00000250448.2:c.642G>C	p.Trp214Cys	p.W214C	ENST00000250448	NM_004496.3	214	tgG/tgC																																													NEWRECORD																																		
KIT	3815	MSKCC	GRCh37	4	55575642	55575643	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0013510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	159	718	0	ENST00000288135.5:c.1169dup	p.Tyr390Ter	p.Y390*	ENST00000288135	NM_000222.2	390	tac/tAac																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38060879	38060880	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0013510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	63	546	0	ENST00000250448.2:c.1109_1110del	p.Val370AlafsTer44	p.V370Afs*44	ENST00000250448	NM_004496.3	370	gTG/g																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717669	89717673	+	frameshift_variant	Frame_Shift_Del	DEL	ACACG	ACACG	-			P-0013510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	17	661	0	ENST00000371953.3:c.696_700del	p.Arg233GlyfsTer8	p.R233Gfs*8	ENST00000371953	NM_000314.4	232	ACACGa/a																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3779452	3779452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	18	482	0	ENST00000262367.5:c.5596C>T	p.Arg1866Cys	p.R1866C	ENST00000262367	NM_004380.2	1866	Cgc/Tgc																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56495017	56495017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	19	366	0	ENST00000267101.3:c.3374G>A	p.Arg1125Gln	p.R1125Q	ENST00000267101	NM_001982.3	1125	cGg/cAg																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37673728	37673728	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	90	494	0	ENST00000447079.4:c.2882C>G	p.Pro961Arg	p.P961R	ENST00000447079	NM_015083.1	961	cCt/cGt																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5244223	5244223	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	64	342	0	ENST00000357368.4:c.1259G>T	p.Arg420Leu	p.R420L	ENST00000357368	NM_002850.3	420	cGc/cTc																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9857074	9857075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	40	437	0	ENST00000330684.3:c.4326dup	p.Arg1443GlnfsTer9	p.R1443Qfs*9	ENST00000330684	NM_001134407.1	1442	-/C																																													NEWRECORD																																		
RPS6KB2	6199	MSKCC	GRCh37	11	67198887	67198887	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113335412		P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	106	324	3	ENST00000312629.5:c.358C>T	p.Arg120Trp	p.R120W	ENST00000312629	NM_003952.2	120	Cgg/Tgg																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	104	278	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	57	331	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	67	362	0	ENST00000257430.4:c.4393_4394dupAG	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	77	197	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56489534	56489534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	78	315	1	ENST00000267101.3:c.1999C>T	p.Arg667Cys	p.R667C	ENST00000267101	NM_001982.3	667	Cgt/Tgt																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	65	263	0	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	89	245	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																													NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	129	297	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																													NEWRECORD																																		
PMS2	5395	MSKCC	GRCh37	7	6036958	6036958	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	53	336	1	ENST00000265849.7:c.802del	p.Tyr268ThrfsTer39	p.Y268Tfs*39	ENST00000265849	NM_000535.5	268	Tac/ac																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	136	397	4	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																													NEWRECORD																																		
ARAF	369	MSKCC	GRCh37	X	47422384	47422384	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	131	410	2	ENST00000377045.4:c.23del	p.Pro8LeufsTer26	p.P8Lfs*26	ENST00000377045	NM_001654.4	6	ggC/gg																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	80	230	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	35	253	1	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49422892	49422892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	93	277	0	ENST00000301067.7:c.14203C>T	p.Arg4735Trp	p.R4735W	ENST00000301067	NM_003482.3	4735	Cgg/Tgg																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89499363	89499363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	70	308	0	ENST00000336596.2:c.2538delC	p.Met847TrpfsTer10	p.M847Wfs*10	ENST00000336596	NM_005233.5	845	Ccc/cc																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003784	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	86	286	0	ENST00000558401.1:c.41_44delCTCT	p.Ser14PhefsTer29	p.S14Ffs*29	ENST00000558401	NM_004048.2	13	CTCTct/ct																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31021190	31021190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	104	282	1	ENST00000375687.4:c.1189C>T	p.Arg397Cys	p.R397C	ENST00000375687	NM_015338.5	397	Cgt/Tgt																																													NEWRECORD																																		
FUBP1	8880	MSKCC	GRCh37	1	78430339	78430339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	61	377	0	ENST00000370768.2:c.829G>T	p.Gly277Trp	p.G277W	ENST00000370768	NM_003902.3	277	Ggg/Tgg																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198265047	198265047	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	109	329	0	ENST00000335508.6:c.2830T>G	p.Ser944Ala	p.S944A	ENST00000335508	NM_012433.2	944	Tct/Gct																																													NEWRECORD																																		
MITF	4286	MSKCC	GRCh37	3	70014176	70014176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	119	678	0	ENST00000352241.4:c.1340G>A	p.Gly447Asp	p.G447D	ENST00000352241	NM_198159.2	447	gGc/gAc																																													NEWRECORD																																		
HLA-A	3105	MSKCC	GRCh37	6	29910638	29910638	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	71	234	0	ENST00000376809.5:c.178T>G	p.Phe60Val	p.F60V	ENST00000376809	NM_002116.7	60	Ttc/Gtc																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30680692	30680692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	56	376	0	ENST00000376406.3:c.1027G>A	p.Val343Ile	p.V343I	ENST00000376406	NM_014641.2	343	Gtt/Att																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117715413	117715413	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	87	339	0	ENST00000368508.3:c.1076T>C	p.Leu359Pro	p.L359P	ENST00000368508	NM_002944.2	359	cTg/cCg																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157525080	157525080	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	39	342	0	ENST00000346085.5:c.4975A>G	p.Asn1659Asp	p.N1659D	ENST00000346085	NM_020732.3	1659	Aat/Gat																																													NEWRECORD																																		
CDKN2B	1030	MSKCC	GRCh37	9	22006054	22006054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	159	199	3	ENST00000276925.6:c.349G>A	p.Val117Met	p.V117M	ENST00000276925	NM_004936.3	117	Gtg/Atg																																													NEWRECORD																																		
GNAQ	2776	MSKCC	GRCh37	9	80336294	80336294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	125	255	0	ENST00000286548.4:c.1025C>T	p.Ala342Val	p.A342V	ENST00000286548	NM_002072.3	342	gCt/gTt																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133760147	133760147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	61	304	0	ENST00000318560.5:c.2470G>A	p.Val824Met	p.V824M	ENST00000318560	NM_005157.4	824	Gtg/Atg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139401405	139401405	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112900950		P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	47	119	0	ENST00000277541.6:c.3664G>A	p.Val1222Met	p.V1222M	ENST00000277541	NM_017617.3	1222	Gtg/Atg																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43612156	43612156	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181856591		P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	82	267	0	ENST00000355710.3:c.2261C>T	p.Thr754Met	p.T754M	ENST00000355710	NM_020975.4	754	aCg/aTg																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63661937	63661937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	66	221	0	ENST00000279873.7:c.41G>A	p.Gly14Asp	p.G14D	ENST00000279873	NM_032199.2	14	gGc/gAc																																													NEWRECORD																																		
FGF4	2249	MSKCC	GRCh37	11	69589698	69589698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	27	55	0	ENST00000168712.1:c.155C>T	p.Ala52Val	p.A52V	ENST00000168712	NM_002007.2	52	gCg/gTg																																													NEWRECORD																																		
TIMM8B	26521	MSKCC	GRCh37	11	111956081	111956081	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	31	150	0	ENST00000541231.1:c.235A>G	p.Ile79Val	p.I79V	ENST00000541231		79	Att/Gtt																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118375344	118375344	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	62	255	0	ENST00000534358.1:c.8737A>G	p.Ser2913Gly	p.S2913G	ENST00000534358	NM_005933.3	2913	Agt/Ggt																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133244133	133244133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	130	299	0	ENST00000320574.5:c.2275C>T	p.Arg759Cys	p.R759C	ENST00000320574	NM_006231.2	759	Cgt/Tgt																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32906442	32906442	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	79	458	0	ENST00000380152.3:c.827T>C	p.Val276Ala	p.V276A	ENST00000380152		276	gTa/gCa																																													NEWRECORD																																		
RAD51	5888	MSKCC	GRCh37	15	40993303	40993303	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	32	376	0	ENST00000267868.3:c.129A>C	p.Glu43Asp	p.E43D	ENST00000267868	NM_002875.4	43	gaA/gaC																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99456355	99456355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	106	289	0	ENST00000268035.6:c.1672C>T	p.Pro558Ser	p.P558S	ENST00000268035	NM_000875.3	558	Ccc/Tcc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5208017	5208017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	154	360	1	ENST00000357368.4:c.5694G>T	p.Glu1898Asp	p.E1898D	ENST00000357368	NM_002850.3	1898	gaG/gaT																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5221018	5221018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	72	198	0	ENST00000357368.4:c.3448C>T	p.Pro1150Ser	p.P1150S	ENST00000357368	NM_002850.3	1150	Cct/Tct																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15272027	15272027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	55	121	0	ENST00000263388.2:c.6412G>A	p.Ala2138Thr	p.A2138T	ENST00000263388	NM_000435.2	2138	Gca/Aca																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15308309	15308309	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	115	340	0	ENST00000263388.2:c.197+2T>C		p.X66_splice	ENST00000263388	NM_000435.2	66																																														NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15355326	15355326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	13	39	0	ENST00000263377.2:c.2297C>T	p.Pro766Leu	p.P766L	ENST00000263377	NM_058243.2	766	cCg/cTg																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66931405	66931405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	116	521	0	ENST00000374690.3:c.2047C>T	p.Pro683Ser	p.P683S	ENST00000374690	NM_000044.3	683	Cca/Tca																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78727867	78727867	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	42	360	0	ENST00000306801.3:c.716del	p.Asn239ThrfsTer16	p.N239Tfs*16	ENST00000306801	NM_020761.2	238	Aaa/aa																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106733	27106734	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	63	316	0	ENST00000324856.7:c.6347_6348del	p.Arg2116ThrfsTer33	p.R2116Tfs*33	ENST00000324856	NM_006015.4	2115	cAG/c																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25368433	25368434	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	105	412	1	ENST00000256078.4:c.511dup	p.Ile171AsnfsTer14	p.I171Nfs*14	ENST00000256078	NM_033360.2	171	atc/aAtc																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023861	27023861	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	43	101	0	ENST00000324856.7:c.971del	p.Gly324AlafsTer39	p.G324Afs*39	ENST00000324856	NM_006015.4	323	Ggg/gg																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	265	484	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25967116	25967116	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	59	206	0	ENST00000435504.4:c.2090del	p.Gly697ValfsTer102	p.G697Vfs*102	ENST00000435504		697	gGt/gt																																													NEWRECORD																																		
NKX2-1	7080	MSKCC	GRCh37	14	36988309	36988309	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	34	111	0	ENST00000354822.5:c.344delG	p.Gly115AlafsTer10	p.G115Afs*10	ENST00000354822	NM_001079668.2	115	gGc/gc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174910	112174910	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	52	322	0	ENST00000257430.4:c.3622del	p.Thr1208ProfsTer57	p.T1208Pfs*57	ENST00000257430	NM_000038.5	1207	Aaa/aa																																													NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185165720	185165720	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	41	240	0	ENST00000265026.3:c.999delA	p.Val334LeufsTer14	p.V334Lfs*14	ENST00000265026	NM_004721.4	332	gAa/ga																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0011109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	120	276	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916957	178916957	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200018596		P-0011109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	174	544	0	ENST00000263967.3:c.344G>T	p.Arg115Leu	p.R115L	ENST00000263967	NM_006218.2	115	cGa/cTa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0011109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	299	339	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98218673	98218673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	123	218	2	ENST00000331920.6:c.3191C>T	p.Thr1064Met	p.T1064M	ENST00000331920	NM_000264.3	1064	aCg/aTg																																													NEWRECORD																																		
NFE2L2	4780	MSKCC	GRCh37	2	178096570	178096570	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	167	305	0	ENST00000397062.3:c.761T>A	p.Phe254Tyr	p.F254Y	ENST00000397062	NM_006164.4	254	tTc/tAc																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212587204	212587204	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	238	460	0	ENST00000342788.4:c.797T>C	p.Phe266Ser	p.F266S	ENST00000342788	NM_005235.2	266	tTt/tCt																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89391033	89391033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	173	438	0	ENST00000336596.2:c.1099G>A	p.Gly367Arg	p.G367R	ENST00000336596	NM_005233.5	367	Ggg/Agg																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46245316	46245316	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	92	416	0	ENST00000334344.6:c.3410C>A	p.Ser1137Ter	p.S1137*	ENST00000334344	NM_152641.2	1137	tCa/tAa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175440	112175441	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTAGCAGATGTA			P-0011109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	183	292	0	ENST00000257430.4:c.4150_4162dup	p.Thr1388IlefsTer2	p.T1388Ifs*2	ENST00000257430	NM_000038.5	1383	-/TTTAGCAGATGTA																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0008690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	182	352	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	91	333	0	ENST00000342988.3:c.1610A>T	p.Asp537Val	p.D537V	ENST00000342988	NM_005359.5	537	gAc/gTc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	52	286	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9916220	9916220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	81	388	1	ENST00000330684.3:c.2069C>T	p.Thr690Met	p.T690M	ENST00000330684	NM_001134407.1	690	aCg/aTg																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	513	452	3	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151884485	151884485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	227	411	1	ENST00000262189.6:c.4870G>A	p.Gly1624Arg	p.G1624R	ENST00000262189	NM_170606.2	1624	Gga/Aga																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	495073	495073	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	136	466	0	ENST00000399788.2:c.233A>G	p.Asn78Ser	p.N78S	ENST00000399788	NM_001042603.1	78	aAt/aGt																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45374992	45374992	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	93	359	0	ENST00000262160.6:c.851A>G	p.Gln284Arg	p.Q284R	ENST00000262160	NM_005901.5	284	cAg/cGg																																													NEWRECORD																																		
CRLF2	64109	MSKCC	GRCh37	X	1327707	1327707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	317	406	0	ENST00000381566.1:c.174C>A	p.Phe58Leu	p.F58L	ENST00000381566		58	ttC/ttA																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112102972	112102973	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	111	414	0	ENST00000257430.4:c.308dup	p.Ser104IlefsTer35	p.S104Ifs*35	ENST00000257430	NM_000038.5	103	gta/gTta																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0010925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	207	852	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27089539	27089540	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	137	614	0	ENST00000324856.7:c.2498dup	p.Asn833LysfsTer39	p.N833Kfs*39	ENST00000324856	NM_006015.4	832	ata/atAa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0008472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	209	452	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880984	37880985	+	inframe_insertion	In_Frame_Ins	INS	-	-	TACGTGATGGCT			P-0008472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	717	480	0	ENST00000269571.5:c.2314_2325dupTACGTGATGGCT	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/TACGTGATGGCT																																													NEWRECORD																																		
SPOP	8405	MSKCC	GRCh37	17	47696716	47696716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	163	336	0	ENST00000347630.2:c.232G>A	p.Glu78Lys	p.E78K	ENST00000347630	NM_001007230.1	78	Gaa/Aaa																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72991559	72991559	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	305	706	0	ENST00000268489.5:c.2486T>C	p.Met829Thr	p.M829T	ENST00000268489	NM_006885.3	829	aTg/aCg																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81957199	81957199	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0008472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	255	410	0	ENST00000359376.3:c.2417G>T	p.Trp806Leu	p.W806L	ENST00000359376	NM_002661.3	806	tGg/tTg																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120612014	120612014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	10	39	1	ENST00000256646.2:c.7G>T	p.Ala3Ser	p.A3S	ENST00000256646	NM_024408.3	3	Gcc/Tcc																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29606696	29606696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	105	360	0	ENST00000389048.3:c.1184G>A	p.Arg395His	p.R395H	ENST00000389048	NM_004304.4	395	cGt/cAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0007365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	215	434	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114920413	114920413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	241	530	1	ENST00000543371.1:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000543371	NM_001198531.1	452	Ggg/Agg																																													NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1801148	1801148	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199968400		P-0007365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	10	309	0	ENST00000260795.2:c.277C>T	p.Arg93Trp	p.R93W	ENST00000260795		93	Cgg/Tgg																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48593394	48593394	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			55	74	294	0	ENST00000342988.3:c.1145A>G	p.His382Arg	p.H382R	ENST00000342988	NM_005359.5	382	cAc/cGc																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41385182	41385182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	59	420	0	ENST00000373198.4:c.779G>A	p.Arg260Gln	p.R260Q	ENST00000373198	NM_133170.3	260	cGg/cAg																																													NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28644740	28644741	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	54	332	1	ENST00000241453.7:c.52dup	p.Ser18PhefsTer24	p.S18Ffs*24	ENST00000241453	NM_004119.2	18	tct/tTct																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	31	180	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0004194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	97	533	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16004856	16004856	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	102	393	2	ENST00000268712.3:c.2398C>T	p.Gln800Ter	p.Q800*	ENST00000268712	NM_006311.3	800	Cag/Tag																																													NEWRECORD																																		
FUBP1	8880	MSKCC	GRCh37	1	78428510	78428510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	112	402	0	ENST00000370768.2:c.1289G>A	p.Arg430His	p.R430H	ENST00000370768	NM_003902.3	430	cGt/cAt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178938932	178938932	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	36	121	0	ENST00000263967.3:c.2174A>G	p.Asp725Gly	p.D725G	ENST00000263967	NM_006218.2	725	gAt/gGt																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67063716	67063717	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GT			P-0004194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	41	215	0	ENST00000412916.2:c.165+1_165+2dup		p.-55fs	ENST00000412916		55	-/GT																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	12032529	12032536	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGAGAT	AAGGAGAT	-			P-0004194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	73	284	0	ENST00000353533.5:c.965_972del	p.Lys322ThrfsTer6	p.K322Tfs*6	ENST00000353533	NM_003010.3	322	aAAGGAGAT/a																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	95	455	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	19	301	0	ENST00000257430.4:c.3944C>A	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tAa																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114920396	114920396	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	113	584	0	ENST00000543371.1:c.1337A>C	p.Lys446Thr	p.K446T	ENST00000543371	NM_001198531.1	446	aAg/aCg																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212426657	212426657	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	71	434	0	ENST00000342788.4:c.2458C>A	p.Leu820Met	p.L820M	ENST00000342788	NM_005235.2	820	Ctg/Atg																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71026118	71026118	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	69	412	0	ENST00000318789.4:c.1504T>A	p.Phe502Ile	p.F502I	ENST00000318789	NM_032682.5	502	Ttc/Atc																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67576373	67576373	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	36	254	0	ENST00000274335.5:c.652G>T	p.Glu218Ter	p.E218*	ENST00000274335		218	Gaa/Taa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112111340	112111340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	41	262	1	ENST00000257430.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000257430	NM_000038.5	146	gCt/gTt																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117680994	117680994	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	42	318	0	ENST00000368508.3:c.3626T>G	p.Leu1209Trp	p.L1209W	ENST00000368508	NM_002944.2	1209	tTg/tGg																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57861143	57861143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	74	553	0	ENST00000228682.2:c.940C>T	p.Arg314Cys	p.R314C	ENST00000228682	NM_005269.2	314	Cgc/Tgc																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133209268	133209268	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	99	508	1	ENST00000320574.5:c.6118G>T	p.Ala2040Ser	p.A2040S	ENST00000320574	NM_006231.2	2040	Gcg/Tcg																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67457310	67457310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	139	435	0	ENST00000327367.4:c.284C>T	p.Pro95Leu	p.P95L	ENST00000327367	NM_005902.3	95	cCa/cTa																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41551071	41551071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	37	613	0	ENST00000263253.7:c.3215C>T	p.Ser1072Phe	p.S1072F	ENST00000263253	NM_001429.3	1072	tCc/tTc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173607	112173607	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	65	407	0	ENST00000257430.4:c.2319del	p.Phe773LeufsTer4	p.F773Lfs*4	ENST00000257430	NM_000038.5	772	acT/ac																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89725043	89725043	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	31	411	0	ENST00000371953.3:c.1027delG		p.X343_splice	ENST00000371953	NM_000314.4	343																																														NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27089625	27089626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	36	479	0	ENST00000324856.7:c.2583dup	p.Ser862LeufsTer10	p.S862Lfs*10	ENST00000324856	NM_006015.4	861	gcc/gCcc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0000351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	225	323	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29917765	29917765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			143	129	433	0	ENST00000389048.3:c.903G>A	p.Met301Ile	p.M301I	ENST00000389048	NM_004304.4	301	atG/atA																																													NEWRECORD																																		
NFE2L2	4780	MSKCC	GRCh37	2	178095743	178095743	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			473	522	475	0	ENST00000397062.3:c.1588G>C	p.Asp530His	p.D530H	ENST00000397062	NM_006164.4	530	Gat/Cat																																													NEWRECORD																																		
NFE2L2	4780	MSKCC	GRCh37	2	178095822	178095822	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			374	402	309	0	ENST00000397062.3:c.1509G>C	p.Arg503Ser	p.R503S	ENST00000397062	NM_006164.4	503	agG/agC																																													NEWRECORD																																		
NFE2L2	4780	MSKCC	GRCh37	2	178096076	178096076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	297	237	0	ENST00000397062.3:c.1255G>A	p.Asp419Asn	p.D419N	ENST00000397062	NM_006164.4	419	Gat/Aat																																													NEWRECORD																																		
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519922		P-0000351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			469	594	638	0	ENST00000397062.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000397062	NM_006164.4	79	Gag/Aag																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974783	21974784	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			67	169	234	0	ENST00000304494.5:c.43dup	p.Trp15LeufsTer29	p.W15Lfs*29	ENST00000304494	NM_000077.4	15	tgg/tTgg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	97	278	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29446269	29446269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1437	104	445	0	ENST00000389048.3:c.3298G>T	p.Gly1100Cys	p.G1100C	ENST00000389048	NM_004304.4	1100	Ggc/Tgc																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53223599	53223599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	47	203	0	ENST00000375401.3:c.3760C>T	p.Arg1254Cys	p.R1254C	ENST00000375401	NM_004187.3	1254	Cgc/Tgc																																													NEWRECORD																																		
CALR	811	MSKCC	GRCh37	19	13050384	13050385	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTCCTAA			P-0010228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1841	130	562	0	ENST00000316448.5:c.338_345dup	p.Ser116PhefsTer44	p.S116Ffs*44	ENST00000316448	NM_004343.3	112	-/TTTCCTAA																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			507	151	369	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			450	133	226	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55370945	55370945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			519	173	268	0	ENST00000297316.4:c.247C>T	p.Arg83Cys	p.R83C	ENST00000297316	NM_022454.3	83	Cgc/Tgc																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			410	54	196	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180045918	180045920	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTC	CTC	-			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			245	59	190	0	ENST00000261937.6:c.2851_2853del	p.Glu951del	p.E951del	ENST00000261937	NM_182925.4	951	GAG/-																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	84	148	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			856	162	400	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5238958	5238958	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	130	334	0	ENST00000357368.4:c.1821delC	p.Val608TrpfsTer30	p.V608Wfs*30	ENST00000357368	NM_002850.3	607	ccC/cc																																													NEWRECORD																																		
TNFRSF14	8764	MSKCC	GRCh37	1	2491337	2491337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			556	194	340	0	ENST00000355716.4:c.380G>A	p.Cys127Tyr	p.C127Y	ENST00000355716	NM_003820.2	127	tGc/tAc																																													NEWRECORD																																		
RAD54L	8438	MSKCC	GRCh37	1	46726436	46726436	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139448277		P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	89	160	0	ENST00000371975.4:c.515G>A	p.Arg172His	p.R172H	ENST00000371975	NM_003579.3	172	cGc/cAc																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212652792	212652792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	98	391	1	ENST00000342788.4:c.514C>T	p.Pro172Ser	p.P172S	ENST00000342788	NM_005235.2	172	Cct/Tct																																													NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242794881	242794881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs190602950		P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	135	344	1	ENST00000334409.5:c.328G>A	p.Val110Met	p.V110M	ENST00000334409	NM_005018.2	110	Gtg/Atg																																													NEWRECORD																																		
MLH1	4292	MSKCC	GRCh37	3	37038192	37038192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	258	257	0	ENST00000231790.2:c.199G>A	p.Gly67Arg	p.G67R	ENST00000231790	NM_000249.3	67	Ggg/Agg																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71019919	71019919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	181	236	1	ENST00000318789.4:c.1690G>A	p.Ala564Thr	p.A564T	ENST00000318789	NM_032682.5	564	Gcc/Acc																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180057042	180057042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	121	207	0	ENST00000261937.6:c.577G>A	p.Val193Met	p.V193M	ENST00000261937	NM_182925.4	193	Gtg/Atg																																													NEWRECORD																																		
ETV1	2115	MSKCC	GRCh37	7	13935634	13935634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			581	81	197	0	ENST00000405192.2:c.1222C>T	p.Arg408Cys	p.R408C	ENST00000405192	NM_001163147.1	408	Cgt/Tgt																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139399155	139399155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			386	138	315	0	ENST00000277541.6:c.4988G>A	p.Arg1663Gln	p.R1663Q	ENST00000277541	NM_017617.3	1663	cGg/cAg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139410121	139410121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			292	113	234	1	ENST00000277541.6:c.1717G>A	p.Asp573Asn	p.D573N	ENST00000277541	NM_017617.3	573	Gac/Aac																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63850736	63850736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149466999		P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			495	143	292	2	ENST00000279873.7:c.1514C>T	p.Ala505Val	p.A505V	ENST00000279873	NM_032199.2	505	gCg/gTg																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63852248	63852248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145564601		P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	114	198	1	ENST00000279873.7:c.3026C>T	p.Ala1009Val	p.A1009V	ENST00000279873	NM_032199.2	1009	gCg/gTg																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89653835	89653835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			353	105	302	0	ENST00000371953.3:c.133G>A	p.Val45Ile	p.V45I	ENST00000371953	NM_000314.4	45	Gta/Ata																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108155024	108155024	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	113	322	0	ENST00000278616.4:c.3817A>G	p.Asn1273Asp	p.N1273D	ENST00000278616	NM_000051.3	1273	Aat/Gat																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133244968	133244968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			663	227	406	2	ENST00000320574.5:c.2147C>T	p.Ala716Val	p.A716V	ENST00000320574	NM_006231.2	716	gCg/gTg																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48955538	48955538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	102	280	0	ENST00000267163.4:c.1654C>T	p.Arg552Ter	p.R552*	ENST00000267163	NM_000321.2	552	Cga/Tga																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99250904	99250904	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			642	204	391	0	ENST00000268035.6:c.208T>C	p.Tyr70His	p.Y70H	ENST00000268035	NM_000875.3	70	Tac/Cac																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2106749	2106749	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			651	83	389	0	ENST00000219476.3:c.753G>T	p.Glu251Asp	p.E251D	ENST00000219476	NM_000548.3	251	gaG/gaT																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29556292	29556292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			743	228	339	0	ENST00000358273.4:c.2659G>A	p.Ala887Thr	p.A887T	ENST00000358273	NM_001042492.2	887	Gca/Aca																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			293	346	219	2	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70117869	70117869	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	147	253	0	ENST00000245479.2:c.337A>G	p.Met113Val	p.M113V	ENST00000245479	NM_000346.3	113	Atg/Gtg																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70118913	70118913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			674	252	419	0	ENST00000245479.2:c.485G>A	p.Arg162His	p.R162H	ENST00000245479	NM_000346.3	162	cGc/cAc																																													NEWRECORD																																		
MAP2K2	5605	MSKCC	GRCh37	19	4090603	4090603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			534	62	340	0	ENST00000262948.5:c.1196C>T	p.Ala399Val	p.A399V	ENST00000262948	NM_030662.3	399	gCc/gTc																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15281289	15281289	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			206	76	138	0	ENST00000263388.2:c.4967T>C	p.Val1656Ala	p.V1656A	ENST00000263388	NM_000435.2	1656	gTc/gCc																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17950393	17950393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			556	181	266	0	ENST00000458235.1:c.1334G>A	p.Arg445Gln	p.R445Q	ENST00000458235	NM_000215.3	445	cGa/cAa																																													NEWRECORD																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52716217	52716217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	153	267	0	ENST00000322088.6:c.661C>T	p.Arg221Trp	p.R221W	ENST00000322088	NM_014225.5	221	Cgg/Tgg																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41306676	41306676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			748	91	258	1	ENST00000373198.4:c.983G>A	p.Arg328His	p.R328H	ENST00000373198	NM_133170.3	328	cGc/cAc																																													NEWRECORD																																		
U2AF1	7307	MSKCC	GRCh37	21	44514609	44514609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	158	257	0	ENST00000291552.4:c.547C>T	p.Arg183Trp	p.R183W	ENST00000291552	NM_006758.2	183	Cgg/Tgg																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44938562	44938562	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			182	137	151	0	ENST00000377967.4:c.3110A>G	p.Gln1037Arg	p.Q1037R	ENST00000377967	NM_021140.2	1037	cAg/cGg																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66766276	66766276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	110	111	0	ENST00000374690.3:c.1288G>A	p.Ala430Thr	p.A430T	ENST00000374690	NM_000044.3	430	Gcc/Acc																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47641440	47641441	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			679	202	457	1	ENST00000233146.2:c.830dup	p.Leu277PhefsTer7	p.L277Ffs*7	ENST00000233146	NM_000251.2	275	-/T																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198266476	198266477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			427	132	268	0	ENST00000335508.6:c.2359dup	p.Ile787AsnfsTer21	p.I787Nfs*21	ENST00000335508	NM_012433.2	787	att/aAtt																																													NEWRECORD																																		
BAP1	8314	MSKCC	GRCh37	3	52443613	52443613	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			505	144	209	0	ENST00000460680.1:c.79delG	p.Val27CysfsTer45	p.V27Cfs*45	ENST00000460680	NM_004656.3	27	Gtg/tg																																													NEWRECORD																																		
FIP1L1	81608	MSKCC	GRCh37	4	54257658	54257658	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			352	97	269	0	ENST00000337488.6:c.702del	p.Phe234LeufsTer74	p.F234Lfs*74	ENST00000337488	NM_030917.3	233	cTt/ct																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66467646	66467646	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	143	213	0	ENST00000273854.3:c.623del	p.Lys208ArgfsTer60	p.K208Rfs*60	ENST00000273854	NM_004439.5	208	aAg/ag																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106158100	106158100	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			575	75	233	0	ENST00000380013.4:c.3004del	p.Thr1002HisfsTer5	p.T1002Hfs*5	ENST00000380013	NM_001127208.2	1001	Aaa/aa																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152129329	152129329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			649	180	380	0	ENST00000206249.3:c.287del	p.Gly96ValfsTer13	p.G96Vfs*13	ENST00000206249	NM_000125.3	94	ctG/ct																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968322	2968323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	98	229	0	ENST00000396946.4:c.1663dupC	p.Arg555ProfsTer38	p.R555Pfs*38	ENST00000396946	NM_032415.4	555	cgg/cCgg																																													NEWRECORD																																		
FGFR2	2263	MSKCC	GRCh37	10	123245002	123245002	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			663	80	333	0	ENST00000358487.5:c.2102del	p.Gly701AlafsTer16	p.G701Afs*16	ENST00000358487	NM_000141.4	701	gGc/gc																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48878069	48878069	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			321	58	123	0	ENST00000267163.4:c.25del	p.Thr9ArgfsTer56	p.T9Rfs*56	ENST00000267163	NM_000321.2	7	cgA/cg																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73346884	73346884	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			502	94	301	0	ENST00000377767.4:c.1333del	p.Ser445HisfsTer20	p.S445Hfs*20	ENST00000377767	NM_014953.3	445	Tca/ca																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110435908	110435908	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			140	43	77	0	ENST00000375856.3:c.2493del	p.Arg832AlafsTer34	p.R832Afs*34	ENST00000375856	NM_003749.2	831	ggG/gg																																													NEWRECORD																																		
ERCC4	2072	MSKCC	GRCh37	16	14026115	14026116	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			387	130	194	0	ENST00000311895.7:c.1081dup	p.Met361AsnfsTer4	p.M361Nfs*4	ENST00000311895	NM_005236.2	359	gaa/gAaa																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			445	140	228	0	ENST00000264010.4:c.2070delA	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	11924284	11924285	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			41	23	19	0	ENST00000353533.5:c.81_82del	p.Pro29ArgfsTer11	p.P29Rfs*11	ENST00000353533	NM_003010.3	27	ccGGcg/cccg																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56438206	56438207	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	359	331	0	ENST00000407977.2:c.786_787del	p.Gly263GlufsTer18	p.G263Efs*18	ENST00000407977		262	tcAGgg/tcgg																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63533905	63533905	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	305	187	0	ENST00000307078.5:c.1249delG	p.Ala417ArgfsTer41	p.A417Rfs*41	ENST00000307078	NM_004655.3	417	Gcg/cg																																													NEWRECORD																																		
PIK3R2	5296	MSKCC	GRCh37	19	18273105	18273105	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			601	72	330	0	ENST00000222254.8:c.1000del	p.Asp334ThrfsTer7	p.D334Tfs*7	ENST00000222254	NM_005027.3	332	tGg/tg																																													NEWRECORD																																		
MAPK1	5594	MSKCC	GRCh37	22	22221709	22221714	+	inframe_deletion	In_Frame_Del	DEL	CCGCCG	CCGCCG	-			P-0001494-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			140	11	65	0	ENST00000215832.6:c.17_22del	p.Ala6_Ala7del	p.A6_A7del	ENST00000215832	NM_002745.4	6	gCGGCGGgc/ggc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	2792	346	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57864645	57864645	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1323	845	804	4	ENST00000228682.2:c.2122G>T	p.Glu708Ter	p.E708*	ENST00000228682	NM_005269.2	708	Gaa/Taa																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67070596	67070596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	547	411	1	ENST00000412916.2:c.220C>T	p.Gln74Ter	p.Q74*	ENST00000412916		74	Cag/Tag																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111475	8111476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0010508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	185	326	0	ENST00000346208.3:c.962_963insAA	p.Thr322ArgfsTer34	p.T322Rfs*34	ENST00000346208		321	cag/cAAag																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64577271	64577272	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACA			P-0010508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	423	451	0	ENST00000337652.1:c.308_310dup	p.Leu103dup	p.L103dup	ENST00000337652	NM_130803.2	103	tcc/tTGTcc																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16261080	16261121	+	protein_altering_variant	In_Frame_Del	DEL	ACAGTCGGTTCCACCCAGGGTCCATGCCTGTGATCGACGATC	ACAGTCGGTTCCACCCAGGGTCCATGCCTGTGATCGACGATC	TGA			P-0010508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	112	165	0	ENST00000375759.3:c.8345_8386delinsTGA	p.Asn2782_Arg2796delinsMetSer	p.N2782_R2796delinsMS	ENST00000375759	NM_015001.2	2782	aACAGTCGGTTCCACCCAGGGTCCATGCCTGTGATCGACGATCgt/aTGAgt																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153253747	153253747	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0004692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	101	395	0	ENST00000281708.4:c.985+1G>A		p.X329_splice	ENST00000281708	NM_033632.3	329																																														NEWRECORD																																		
JAK2	3717	MSKCC	GRCh37	9	5066700	5066700	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	262	597	0	ENST00000381652.3:c.1237C>G	p.Leu413Val	p.L413V	ENST00000381652	NM_004972.3	413	Ctg/Gtg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578552	7578552	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0004692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	368	273	0	ENST00000269305.4:c.378C>G	p.Tyr126Ter	p.Y126*	ENST00000269305	NM_001126112.2	126	taC/taG																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15364965	15364965	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0004692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	87	356	0	ENST00000263377.2:c.2156C>G	p.Thr719Arg	p.T719R	ENST00000263377	NM_058243.2	719	aCa/aGa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175324	112175325	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	186	412	0	ENST00000257430.4:c.4035dup	p.Ser1346IlefsTer8	p.S1346Ifs*8	ENST00000257430	NM_000038.5	1345	gaa/gAaa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0013499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	332	706	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	200	531	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11138480	11138480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	243	523	0	ENST00000344626.4:c.3236C>T	p.Ser1079Leu	p.S1079L	ENST00000344626	NM_003072.3	1079	tCg/tTg																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0013499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	205	575	0	ENST00000304494.5:c.132C>G	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/taG																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44966766	44966767	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	355	845	0	ENST00000377967.4:c.3991dup	p.Cys1331LeufsTer2	p.C1331Lfs*2	ENST00000377967	NM_021140.2	1330	-/T																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0005483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	128	457	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880984	37880985	+	inframe_insertion	In_Frame_Ins	INS	-	-	TACGTGATGGCT			P-0005483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	237	434	0	ENST00000269571.5:c.2314_2325dupTACGTGATGGCT	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/TACGTGATGGCT																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974696	21974697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	98	338	0	ENST00000304494.5:c.130_131insC	p.Tyr44SerfsTer76	p.Y44Sfs*76	ENST00000304494	NM_000077.4	44	tac/tCac																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0002523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	4388	322	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89498400	89498400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			411	71	344	0	ENST00000336596.2:c.2372C>T	p.Thr791Ile	p.T791I	ENST00000336596	NM_005233.5	791	aCa/aTa																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66356145	66356145	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			35	491	419	0	ENST00000273854.3:c.1352G>T	p.Ser451Ile	p.S451I	ENST00000273854	NM_004439.5	451	aGc/aTc																																													NEWRECORD																																		
PNRC1	10957	MSKCC	GRCh37	6	89793911	89793911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	84	216	0	ENST00000336032.3:c.980C>T	p.Thr327Ile	p.T327I	ENST00000336032	NM_006813.2	327	aCt/aTt																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81392068	81392068	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	214	438	0	ENST00000222390.5:c.209G>T	p.Cys70Phe	p.C70F	ENST00000222390	NM_000601.4	70	tGt/tTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			50	360	295	0	ENST00000269305.4:c.733G>C	p.Gly245Arg	p.G245R	ENST00000269305	NM_001126112.2	245	Ggc/Cgc																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47032587	47032587	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			102	271	361	0	ENST00000329236.7:c.262A>T	p.Lys88Ter	p.K88*	ENST00000329236	NM_001204466.1	88	Aaa/Taa																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66765177	66765177	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			353	66	179	0	ENST00000374690.3:c.189G>T	p.Gln63His	p.Q63H	ENST00000374690	NM_000044.3	63	caG/caT																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67589589	67589606	+	inframe_deletion	In_Frame_Del	DEL	AATATAACACTCAGTTTC	AATATAACACTCAGTTTC	-			P-0002523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			540	235	354	0	ENST00000274335.5:c.1354_1371del	p.Tyr452_Gln457del	p.Y452_Q457del	ENST00000274335		451	gAATATAACACTCAGTTTCaa/gaa																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974774	21974775	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCA			P-0002523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			68	120	154	0	ENST00000304494.5:c.47_52dup	p.Ala17_Thr18insMetAla	p.A17_T18insMA	ENST00000304494	NM_000077.4	18	acg/aTGGCCAcg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002081-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	378	348	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0002081-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	116	331	0	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1221293	1221293	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002081-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	122	252	0	ENST00000326873.7:c.816C>A	p.Tyr272Ter	p.Y272*	ENST00000326873	NM_000455.4	272	taC/taA																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11141472	11141473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002081-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	133	293	0	ENST00000344626.4:c.3450dup	p.Ile1151HisfsTer25	p.I1151Hfs*25	ENST00000344626	NM_003072.3	1150	ttc/ttCc																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	71	201	2	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519942		P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	109	398	1	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151874092	151874093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	254	683	0	ENST00000262189.6:c.8445dupA	p.Ser2816IlefsTer6	p.S2816Ifs*6	ENST00000262189	NM_170606.2	2815	-/A																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139390656	139390656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	38	715	2	ENST00000277541.6:c.7535C>T	p.Pro2512Leu	p.P2512L	ENST00000277541	NM_017617.3	2512	cCg/cTg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49443799	49443799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs112236653		P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	224	581	1	ENST00000301067.7:c.3572C>T	p.Pro1191Leu	p.P1191L	ENST00000301067	NM_003482.3	1191	cCg/cTg																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2210735	2210735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	200	646	1	ENST00000398665.3:c.1232G>A	p.Arg411His	p.R411H	ENST00000398665	NM_032482.2	411	cGc/cAc																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65330610	65330611	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	215	587	0	ENST00000342505.4:c.1035dupA	p.Leu346ThrfsTer4	p.L346Tfs*4	ENST00000342505	NM_002227.2	345	-/A																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41574502	41574502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	127	454	1	ENST00000263253.7:c.6787C>T	p.Arg2263Ter	p.R2263*	ENST00000263253	NM_001429.3	2263	Cga/Tga																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16261065	16261065	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181891870		P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	62	198	0	ENST00000375759.3:c.8330C>T	p.Ala2777Val	p.A2777V	ENST00000375759	NM_015001.2	2777	gCg/gTg																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65316513	65316513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	152	374	0	ENST00000342505.4:c.1729C>T	p.Arg577Trp	p.R577W	ENST00000342505	NM_002227.2	577	Cgg/Tgg																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65321195	65321195	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	65	197	0	ENST00000342505.4:c.1645C>T	p.Arg549Ter	p.R549*	ENST00000342505	NM_002227.2	549	Cga/Tga																																													NEWRECORD																																		
RYBP	23429	MSKCC	GRCh37	3	72495657	72495657	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	100	319	0	ENST00000477973.2:c.413A>G	p.Thr139Ala	p.T139A	ENST00000477973	NM_012234.5	139	Acc/Gcc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112176693	112176693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	107	484	2	ENST00000257430.4:c.5402C>T	p.Ala1801Val	p.A1801V	ENST00000257430	NM_000038.5	1801	gCt/gTt																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157405902	157405902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	51	431	0	ENST00000346085.5:c.2144C>T	p.Pro715Leu	p.P715L	ENST00000346085	NM_020732.3	715	cCg/cTg																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2951813	2951813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	139	512	0	ENST00000396946.4:c.3137C>T	p.Ala1046Val	p.A1046V	ENST00000396946	NM_032415.4	1046	gCc/gTc																																													NEWRECORD																																		
JAK2	3717	MSKCC	GRCh37	9	5126729	5126729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	206	445	1	ENST00000381652.3:c.3337C>T	p.Arg1113Cys	p.R1113C	ENST00000381652	NM_004972.3	1113	Cgc/Tgc																																													NEWRECORD																																		
PAX5	5079	MSKCC	GRCh37	9	36840613	36840613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	136	396	1	ENST00000358127.4:c.1120G>A	p.Ala374Thr	p.A374T	ENST00000358127	NM_001280556.1	374	Gct/Act																																													NEWRECORD																																		
LMO1	4004	MSKCC	GRCh37	11	8252001	8252001	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	138	399	0	ENST00000335790.3:c.76G>T	p.Gly26Cys	p.G26C	ENST00000335790	NM_002315.2	26	Ggc/Tgc																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67662396	67662396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	182	626	0	ENST00000264010.4:c.1642C>A	p.Pro548Thr	p.P548T	ENST00000264010	NM_006565.3	548	Ccc/Acc																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29586101	29586101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	101	371	1	ENST00000358273.4:c.4384C>T	p.Arg1462Trp	p.R1462W	ENST00000358273	NM_001042492.2	1462	Cgg/Tgg																																													NEWRECORD																																		
RARA	5914	MSKCC	GRCh37	17	38510573	38510573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	142	522	0	ENST00000254066.5:c.827G>A	p.Arg276Gln	p.R276Q	ENST00000254066	NM_000964.3	276	cGg/cAg																																													NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58740594	58740594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	269	1047	1	ENST00000305921.3:c.1499C>A	p.Pro500His	p.P500H	ENST00000305921	NM_003620.3	500	cCt/cAt																																													NEWRECORD																																		
ERG	2078	MSKCC	GRCh37	21	39755606	39755606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	179	446	1	ENST00000288319.7:c.1159G>A	p.Ala387Thr	p.A387T	ENST00000288319	NM_182918.3	387	Gcc/Acc																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53247580	53247580	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	37	298	0	ENST00000375401.3:c.229G>C	p.Ala77Pro	p.A77P	ENST00000375401	NM_004187.3	77	Gcc/Ccc																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25966872	25966873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	167	529	3	ENST00000435504.4:c.2333dupC	p.Val779SerfsTer25	p.V779Sfs*25	ENST00000435504		778	cca/ccCa																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63526212	63526215	+	frameshift_variant	Frame_Shift_Del	DEL	AAGT	AAGT	-			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	139	417	0	ENST00000307078.5:c.2411_2414del	p.Tyr804SerfsTer56	p.Y804Sfs*56	ENST00000307078	NM_004655.3	804	tACTTc/tc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0006905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	497	292	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720711	89720712	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	80	42	0	ENST00000371953.3:c.867dup	p.Val290SerfsTer8	p.V290Sfs*8	ENST00000371953	NM_000314.4	288	gaa/gAaa																																													NEWRECORD																																		
TCF3	6929	MSKCC	GRCh37	19	1612209	1612209	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	128	316	0	ENST00000344749.5:c.1810C>T	p.Arg604Ter	p.R604*	ENST00000344749	NM_001136139.2	604	Cga/Tga																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	41989106	41989107	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	712	650	1	ENST00000219905.7:c.1901dup	p.Ser635ValfsTer22	p.S635Vfs*22	ENST00000219905	NM_001164273.1	633	gga/ggAa																																													NEWRECORD																																		
H3F3B	3021	MSKCC	GRCh37	17	73774894	73774895	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1281	298	473	0	ENST00000254810.4:c.278dup	p.Gln94AlafsTer4	p.Q94Afs*4	ENST00000254810	NM_005324.3	93	ctg/ctTg																																													NEWRECORD																																		
NEGR1	257194	MSKCC	GRCh37	1	72400787	72400795	+	inframe_deletion	In_Frame_Del	DEL	TGTTCTGGG	TGTTCTGGG	-			P-0006905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	355	545	0	ENST00000357731.5:c.376_384del	p.Pro126_Thr128del	p.P126_T128del	ENST00000357731	NM_173808.2	126	CCCAGAACA/-																																													NEWRECORD																																		
FAM46C	54855	MSKCC	GRCh37	1	118165663	118165663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1084	117	540	0	ENST00000369448.3:c.173G>A	p.Arg58Gln	p.R58Q	ENST00000369448	NM_017709.3	58	cGg/cAg																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212495306	212495306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	123	429	0	ENST00000342788.4:c.1960G>T	p.Ala654Ser	p.A654S	ENST00000342788	NM_005235.2	654	Gca/Tca																																													NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242794499	242794499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	46	419	1	ENST00000334409.5:c.443G>T	p.Arg148Met	p.R148M	ENST00000334409	NM_005018.2	148	aGg/aTg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0005981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	228	378	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																													NEWRECORD																																		
MAX	4149	MSKCC	GRCh37	14	65543349	65543349	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1218	225	735	0	ENST00000358664.4:c.328C>T	p.Gln110Ter	p.Q110*	ENST00000358664	NM_002382.4	110	Caa/Taa																																													NEWRECORD																																		
TRAF7	84231	MSKCC	GRCh37	16	2222282	2222282	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	171	702	0	ENST00000326181.6:c.566G>C	p.Arg189Pro	p.R189P	ENST00000326181	NM_032271.2	189	cGg/cCg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0005981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	164	613	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9546965	9546965	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	62	317	0	ENST00000353224.5:c.1057G>T	p.Gly353Cys	p.G353C	ENST00000353224	NM_177990.2	353	Ggc/Tgc																																													NEWRECORD																																		
NKX2-1	7080	MSKCC	GRCh37	14	36988545	36988546	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1548	1638	760	0	ENST00000354822.5:c.107dup	p.His37AlafsTer9	p.H37Afs*9	ENST00000354822	NM_001079668.2	36	aag/aaAg																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47034417	47034417	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0005981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	139	266	0	ENST00000329236.7:c.272del		p.X91_splice	ENST00000329236	NM_001204466.1	91																																														NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249017	55249018	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0010675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	127	265	0	ENST00000275493.2:c.2317_2319dupCAC	p.His773dup	p.H773dup	ENST00000275493	NM_005228.3	773	ccc/ccCCAc																																													NEWRECORD																																		
STK40	83931	MSKCC	GRCh37	1	36814416	36814416	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0010675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	218	495	0	ENST00000373129.3:c.624G>T	p.Arg208Ser	p.R208S	ENST00000373129	NM_032017.1	208	agG/agT																																													NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0010342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	174	347	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0010342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	179	139	0	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174086	112174086	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	119	394	0	ENST00000257430.4:c.2795C>A	p.Ser932Ter	p.S932*	ENST00000257430	NM_000038.5	932	tCa/tAa																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57858985	57858985	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142957882		P-0010342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	1058	1068	6	ENST00000228682.2:c.481C>T	p.Arg161Trp	p.R161W	ENST00000228682	NM_005269.2	161	Cgg/Tgg																																													NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31379464	31379464	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	309	461	1	ENST00000328111.2:c.871A>G	p.Thr291Ala	p.T291A	ENST00000328111	NM_006892.3	291	Acc/Gcc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173661	112173662	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0010342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	110	327	0	ENST00000257430.4:c.2373_2374del	p.His791GlnfsTer7	p.H791Qfs*7	ENST00000257430	NM_000038.5	790	agACac/agac																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128198	112128198	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	159	455	0	ENST00000257430.4:c.704del	p.Leu235TyrfsTer58	p.L235Yfs*58	ENST00000257430	NM_000038.5	234	cTt/ct																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0000802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			203	357	345	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156844747	156844747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1426	518	398	0	ENST00000524377.1:c.1301C>T	p.Thr434Met	p.T434M	ENST00000524377	NM_002529.3	434	aCg/aTg																																													NEWRECORD																																		
RFWD2	64326	MSKCC	GRCh37	1	176175972	176175972	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	20	50	0	ENST00000367669.3:c.143T>C	p.Val48Ala	p.V48A	ENST00000367669	NM_022457.5	48	gTg/gCg																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212570070	212570070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			491	134	370	0	ENST00000342788.4:c.1171G>A	p.Val391Ile	p.V391I	ENST00000342788	NM_005235.2	391	Gtc/Atc																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86564590	86564590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			544	140	274	0	ENST00000274376.6:c.322G>T	p.Ala108Ser	p.A108S	ENST00000274376	NM_002890.2	108	Gct/Tct																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174400	112174400	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	59	112	0	ENST00000257430.4:c.3110del	p.Asn1037ThrfsTer19	p.N1037Tfs*19	ENST00000257430	NM_000038.5	1037	Aac/ac																																													NEWRECORD																																		
RPS6KB2	6199	MSKCC	GRCh37	11	67196695	67196696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			160	170	145	0	ENST00000312629.5:c.230dupG	p.Tyr78LeufsTer42	p.Y78Lfs*42	ENST00000312629	NM_003952.2	75	aag/aaGg																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70117958	70117959	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			110	229	91	0	ENST00000245479.2:c.427dup	p.Trp143LeufsTer109	p.W143Lfs*109	ENST00000245479	NM_000346.3	142	-/T																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36231863	36231879	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGAAGCTTTTCCCTGT	GTGAAGCTTTTCCCTGT	-			P-0000802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			479	178	240	0	ENST00000300305.3:c.509-4_521del		p.X170_splice	ENST00000300305		170																																														NEWRECORD																																		
MAP2K1	5604	MSKCC	GRCh37	15	66727483	66727483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	163	733	0	ENST00000307102.5:c.199G>A	p.Asp67Asn	p.D67N	ENST00000307102	NM_002755.3	67	Gac/Aac																																													NEWRECORD																																		
SDHB	6390	MSKCC	GRCh37	1	17355198	17355198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	607	632	0	ENST00000375499.3:c.320G>A	p.Gly107Glu	p.G107E	ENST00000375499	NM_003000.2	107	gGa/gAa																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143324144	143324144	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	352	555	2	ENST00000262992.4:c.319G>C	p.Glu107Gln	p.E107Q	ENST00000262992	NM_001101669.1	107	Gag/Cag																																													NEWRECORD																																		
HIST1H3B	8358	MSKCC	GRCh37	6	26031889	26031889	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	190	850	0	ENST00000244661.2:c.400G>C	p.Glu134Gln	p.E134Q	ENST00000244661	NM_003537.3	134	Gaa/Caa																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29557383	29557383	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	303	433	1	ENST00000358273.4:c.3096C>A	p.Cys1032Ter	p.C1032*	ENST00000358273	NM_001042492.2	1032	tgC/tgA																																													NEWRECORD																																		
ARAF	369	MSKCC	GRCh37	X	47428403	47428403	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1226	269	1289	0	ENST00000377045.4:c.1271A>T	p.Asn424Ile	p.N424I	ENST00000377045	NM_001654.4	424	aAc/aTc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578175	7578187	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ACCTCAGGCGGCT	ACCTCAGGCGGCT	-			P-0012240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	448	906	0	ENST00000269305.4:c.662_672+2del		p.X221_splice	ENST00000269305	NM_001126112.2	221																																														NEWRECORD																																		
RHOA	387	MSKCC	GRCh37	3	49405933	49405933	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1094	280	954	1	ENST00000418115.1:c.205del	p.Leu69Ter	p.L69*	ENST00000418115	NM_001664.2	69	Ctg/tg																																													NEWRECORD																																		
PIM1	5292	MSKCC	GRCh37	6	37139078	37139079	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	142	443	2	ENST00000373509.5:c.420dup	p.Glu141ArgfsTer68	p.E141Rfs*68	ENST00000373509	NM_002648.3	140	caa/cAaa																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0008469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	103	185	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0008469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1316	274	551	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579357	7579358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGTTT			P-0008469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	223	356	0	ENST00000269305.4:c.329_330insAAACG	p.Leu111AsnfsTer14	p.L111Nfs*14	ENST00000269305	NM_001126112.2	110	cgt/cgAAACGt																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29587480	29587489	+	frameshift_variant	Frame_Shift_Del	DEL	TCGTCTACTC	TCGTCTACTC	-			P-0008469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	257	385	0	ENST00000358273.4:c.4525_4534del	p.Arg1509GlyfsTer62	p.R1509Gfs*62	ENST00000358273	NM_001042492.2	1508	caTCGTCTACTC/ca																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	140	480	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	443471	443471	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	71	591	0	ENST00000399788.2:c.1426T>C	p.Cys476Arg	p.C476R	ENST00000399788	NM_001042603.1	476	Tgc/Cgc																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36252856	36252857	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	502	184	0	ENST00000300305.3:c.505dupA	p.Arg169LysfsTer44	p.R169Kfs*44	ENST00000300305		169	aga/aAga																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37879810	37879810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	469	156	0	ENST00000269571.5:c.2105C>T	p.Pro702Leu	p.P702L	ENST00000269571		702	cCt/cTt																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68844210	68844211	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	213	225	0	ENST00000261769.5:c.801dup	p.Lys268Ter	p.K268*	ENST00000261769	NM_004360.3	266	-/T																																													NEWRECORD																																		
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	126	252	0	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	73	345	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	57	243	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7143049	7143049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	48	222	3	ENST00000302850.5:c.2320G>A	p.Val774Met	p.V774M	ENST00000302850	NM_000208.2	774	Gtg/Atg																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	145	443	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	258	335	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	112	329	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968266	2968266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	136	453	0	ENST00000396946.4:c.1720G>A	p.Val574Ile	p.V574I	ENST00000396946	NM_032415.4	574	Gtc/Atc																																													NEWRECORD																																		
PIK3CD	5293	MSKCC	GRCh37	1	9775985	9775985	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201492009		P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	59	179	0	ENST00000377346.4:c.449C>T	p.Ala150Val	p.A150V	ENST00000377346	NM_005026.3	150	gCg/gTg																																													NEWRECORD																																		
NFKBIA	4792	MSKCC	GRCh37	14	35872018	35872018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	218	670	1	ENST00000216797.5:c.595G>A	p.Val199Met	p.V199M	ENST00000216797	NM_020529.2	199	Gtg/Atg																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45375016	45375016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	86	289	0	ENST00000262160.6:c.827C>T	p.Ser276Leu	p.S276L	ENST00000262160	NM_005901.5	276	tCg/tTg																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	26101072	26101072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	153	566	0	ENST00000435504.4:c.20G>A	p.Arg7Lys	p.R7K	ENST00000435504		7	aGg/aAg																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29443675	29443675	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1034835558		P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	86	215	0	ENST00000389048.3:c.3542G>A	p.Arg1181His	p.R1181H	ENST00000389048	NM_004304.4	1181	cGc/cAc																																													NEWRECORD																																		
RAF1	5894	MSKCC	GRCh37	3	12641689	12641689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	111	367	1	ENST00000251849.4:c.952C>T	p.Arg318Trp	p.R318W	ENST00000251849	NM_002880.3	318	Cgg/Tgg																																													NEWRECORD																																		
MLH1	4292	MSKCC	GRCh37	3	37053310	37053310	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	192	390	0	ENST00000231790.2:c.546-1G>A		p.X182_splice	ENST00000231790	NM_000249.3	182																																														NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175025	112175025	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	89	279	0	ENST00000257430.4:c.3734A>C	p.Lys1245Thr	p.K1245T	ENST00000257430	NM_000038.5	1245	aAg/aCg																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149504355	149504355	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	84	303	0	ENST00000261799.4:c.1847A>C	p.Glu616Ala	p.E616A	ENST00000261799	NM_002609.3	616	gAg/gCg																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63851485	63851485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	69	152	0	ENST00000279873.7:c.2263G>A	p.Val755Ile	p.V755I	ENST00000279873	NM_032199.2	755	Gtc/Atc																																													NEWRECORD																																		
SH2B3	10019	MSKCC	GRCh37	12	111856472	111856472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	85	296	2	ENST00000341259.2:c.523C>T	p.Arg175Trp	p.R175W	ENST00000341259	NM_005475.2	175	Cgg/Tgg																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28893578	28893578	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	101	369	0	ENST00000282397.4:c.3268T>G	p.Trp1090Gly	p.W1090G	ENST00000282397	NM_002019.4	1090	Tgg/Ggg																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2124255	2124255	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	112	357	0	ENST00000219476.3:c.2410T>C	p.Cys804Arg	p.C804R	ENST00000219476	NM_000548.3	804	Tgc/Cgc																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9984931	9984931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	173	497	1	ENST00000330684.3:c.1034G>A	p.Gly345Asp	p.G345D	ENST00000330684	NM_001134407.1	345	gGc/gAc																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72991497	72991497	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	187	647	0	ENST00000268489.5:c.2548C>A	p.Leu850Ile	p.L850I	ENST00000268489	NM_006885.3	850	Ctc/Atc																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89346583	89346583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	94	406	0	ENST00000301030.4:c.6367G>A	p.Ala2123Thr	p.A2123T	ENST00000301030	NM_001256183.1	2123	Gcc/Acc																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89845237	89845237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	158	452	1	ENST00000389301.3:c.1798C>T	p.Arg600Cys	p.R600C	ENST00000389301	NM_000135.2	600	Cgt/Tgt																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435837	56435837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	68	209	0	ENST00000407977.2:c.1300C>T	p.Pro434Ser	p.P434S	ENST00000407977		434	Ccc/Tcc																																													NEWRECORD																																		
PIK3C3	5289	MSKCC	GRCh37	18	39570487	39570487	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	114	469	0	ENST00000262039.4:c.683A>T	p.Asp228Val	p.D228V	ENST00000262039	NM_002647.2	228	gAt/gTt																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10259628	10259628	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	133	476	0	ENST00000340748.4:c.2604G>A	p.Trp868Ter	p.W868*	ENST00000340748		868	tgG/tgA																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484426	57484426	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	115	294	0	ENST00000371085.3:c.607C>A	p.Leu203Met	p.L203M	ENST00000371085	NM_000516.4	203	Ctg/Atg																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47084145	47084146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	82	363	0	ENST00000409792.3:c.7143dupC	p.Ser2382LeufsTer47	p.S2382Lfs*47	ENST00000409792	NM_014159.6	2381	-/C																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47143009	47143010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	109	564	0	ENST00000409792.3:c.4953dup	p.Thr1652TyrfsTer14	p.T1652Yfs*14	ENST00000409792	NM_014159.6	1651	-/T																																													NEWRECORD																																		
SRSF2	6427	MSKCC	GRCh37	17	74732279	74732279	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	205	617	0	ENST00000359995.5:c.630del	p.Lys211SerfsTer21	p.K211Sfs*21	ENST00000359995	NM_001195427.1	210	ccC/cc																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187557272	187557273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	120	407	0	ENST00000441802.2:c.4089dupT	p.Thr1364TyrfsTer8	p.T1364Yfs*8	ENST00000441802	NM_005245.3	1363	-/T																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110435293	110435295	+	inframe_deletion	In_Frame_Del	DEL	CGG	CGG	-			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	26	59	0	ENST00000375856.3:c.3106_3108del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1036	CCG/-																																													NEWRECORD																																		
JUN	3725	MSKCC	GRCh37	1	59248461	59248461	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	79	304	0	ENST00000371222.2:c.282del	p.Thr95ProfsTer9	p.T95Pfs*9	ENST00000371222	NM_002228.3	94	ccC/cc																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022666	31022667	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	99	367	0	ENST00000375687.4:c.2156_2157del	p.Glu719GlyfsTer54	p.E719Gfs*54	ENST00000375687	NM_015338.5	717	agGAga/agga																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134670328	134670328	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	77	310	3	ENST00000398015.3:c.244delG	p.Ala82ProfsTer12	p.A82Pfs*12	ENST00000398015	NM_004441.4	80	cGg/cg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0004346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			60	57	398	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9525048	9525048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	33	653	0	ENST00000353224.5:c.1837G>A	p.Glu613Lys	p.E613K	ENST00000353224	NM_177990.2	613	Gag/Aag																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142268377	142268377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	42	561	0	ENST00000350721.4:c.3115C>A	p.His1039Asn	p.H1039N	ENST00000350721	NM_001184.3	1039	Cat/Aat																																													NEWRECORD																																		
FAM175A	84142	MSKCC	GRCh37	4	84403342	84403342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	59	717	0	ENST00000321945.7:c.143C>T	p.Ser48Phe	p.S48F	ENST00000321945	NM_139076.2	48	tCc/tTc																																													NEWRECORD																																		
PGR	5241	MSKCC	GRCh37	11	100998706	100998706	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	49	836	0	ENST00000325455.5:c.1096G>C	p.Asp366His	p.D366H	ENST00000325455	NM_001202474.3	366	Gac/Cac																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32906883	32906883	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	44	414	0	ENST00000380152.3:c.1268T>A	p.Ile423Asn	p.I423N	ENST00000380152		423	aTt/aAt																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103515177	103515177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	23	445	0	ENST00000355739.4:c.1678C>T	p.Leu560Phe	p.L560F	ENST00000355739	NM_000123.3	560	Ctt/Ttt																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	11958249	11958249	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	30	304	0	ENST00000353533.5:c.159C>G	p.Phe53Leu	p.F53L	ENST00000353533	NM_003010.3	53	ttC/ttG																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37619113	37619113	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	41	618	0	ENST00000447079.4:c.789G>C	p.Lys263Asn	p.K263N	ENST00000447079	NM_015083.1	263	aaG/aaC																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68842402	68842403	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0004346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	102	768	0	ENST00000261769.5:c.464_465dup	p.Trp156ThrfsTer60	p.W156Tfs*60	ENST00000261769	NM_004360.3	155	gac/gACac																																													NEWRECORD																																		
EZH2	2146	MSKCC	GRCh37	7	148514325	148514325	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	153	533	0	ENST00000320356.2:c.1399A>C	p.Thr467Pro	p.T467P	ENST00000320356	NM_004456.4	467	Aca/Cca																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111458	8111459	+	frameshift_variant	Frame_Shift_Ins	INS	CG	CG	AGT			P-0009026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	559	445	0	ENST00000346208.3:c.944_945delinsAGT	p.Thr315LysfsTer37	p.T315Kfs*37	ENST00000346208		315	aCG/aAGT																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001757-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			468	457	245	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78936768	78936768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001757-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1314	258	366	1	ENST00000306801.3:c.3850G>A	p.Gly1284Arg	p.G1284R	ENST00000306801	NM_020761.2	1284	Gga/Aga																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36259278	36259279	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001757-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			554	152	148	0	ENST00000300305.3:c.212dup	p.Arg72GlufsTer66	p.R72Efs*66	ENST00000300305		71	ctg/ctTg																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	122	365	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0007698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	106	381	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89880997	89880997	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	315	657	0	ENST00000389301.3:c.214T>A	p.Leu72Met	p.L72M	ENST00000389301	NM_000135.2	72	Ttg/Atg																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56437593	56437593	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	182	320	0	ENST00000407977.2:c.869G>T	p.Cys290Phe	p.C290F	ENST00000407977		290	tGc/tTc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5215357	5215357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	300	534	0	ENST00000357368.4:c.4261C>T	p.Arg1421Cys	p.R1421C	ENST00000357368	NM_002850.3	1421	Cgc/Tgc																																													NEWRECORD																																		
RAF1	5894	MSKCC	GRCh37	3	12641205	12641206	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATAAACAGTTCCAAAAGAGCCTGACCCAATCC			P-0007698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	168	660	0	ENST00000251849.4:c.1061_1092dup	p.Lys365GlyfsTer21	p.K365Gfs*21	ENST00000251849	NM_002880.3	364	-/GGATTGGGTCAGGCTCTTTTGGAACTGTTTAT																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	443491	443491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002529-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			495	169	335	0	ENST00000399788.2:c.1406C>T	p.Pro469Leu	p.P469L	ENST00000399788	NM_001042603.1	469	cCg/cTg																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156849800	156849800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002529-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	161	287	2	ENST00000524377.1:c.2056C>T	p.Arg686Cys	p.R686C	ENST00000524377	NM_002529.3	686	Cgc/Tgc																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106164914	106164914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002529-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	150	176	0	ENST00000380013.4:c.3782G>A	p.Arg1261His	p.R1261H	ENST00000380013	NM_001127208.2	1261	cGc/cAc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112137082	112137082	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0002529-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	130	252	0	ENST00000257430.4:c.834+2T>A		p.X278_splice	ENST00000257430	NM_000038.5	278																																														NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0002529-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	191	285	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49416365	49416379	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTCATACCTGCTCT	GCTCATACCTGCTCT	-			P-0002529-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			471	120	221	0	ENST00000301067.7:c.16332_16338+8del		p.X5444_splice	ENST00000301067	NM_003482.3	5444																																														NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119730	70119731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0002529-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			563	327	404	0	ENST00000245479.2:c.734_735dup	p.Gln246CysfsTer8	p.Q246Cfs*8	ENST00000245479	NM_000346.3	244	-/GT																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0002529-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	196	402	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002728-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			604	197	697	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0002728-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	53	509	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0002728-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			565	125	668	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579419	7579420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002728-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			342	52	483	0	ENST00000269305.4:c.267dup	p.Ser90LeufsTer59	p.S90Lfs*59	ENST00000269305	NM_001126112.2	89	-/C																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41076949	41076949	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002728-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			644	165	647	0	ENST00000373198.4:c.1471G>T	p.Glu491Ter	p.E491*	ENST00000373198	NM_133170.3	491	Gaa/Taa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002728-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			464	99	487	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119814	70119815	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0002728-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	173	655	0	ENST00000245479.2:c.818_819dup	p.Asp274TrpfsTer6	p.D274Wfs*6	ENST00000245479	NM_000346.3	272	-/GT																																													NEWRECORD																																		
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0012854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	195	592	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0012854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	331	650	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																													NEWRECORD																																		
PDPK1	5170	MSKCC	GRCh37	16	2588139	2588139	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0012854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	61	145	0	ENST00000342085.4:c.24+2T>G		p.X8_splice	ENST00000342085	NM_002613.4	8																																														NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89462351	89462351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	154	495	0	ENST00000336596.2:c.1823C>A	p.Ala608Asp	p.A608D	ENST00000336596	NM_005233.5	608	gCt/gAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0009192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	343	337	1	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0009192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	253	403	1	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46245060	46245060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	267	517	1	ENST00000334344.6:c.3154C>T	p.Pro1052Ser	p.P1052S	ENST00000334344	NM_152641.2	1052	Cct/Tct																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81888168	81888168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	383	719	0	ENST00000359376.3:c.313G>A	p.Val105Ile	p.V105I	ENST00000359376	NM_002661.3	105	Gtc/Atc																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119829	70119830	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0009192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	281	588	0	ENST00000245479.2:c.832_833dup	p.Ser279Ter	p.S279*	ENST00000245479	NM_000346.3	277	-/CT																																													NEWRECORD																																		
PARK2	5071	MSKCC	GRCh37	6	162622262	162622262	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	75	429	0	ENST00000366898.1:c.435del	p.Tyr147MetfsTer30	p.Y147Mfs*30	ENST00000366898	NM_004562.2	145	agC/ag																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70120426	70120427	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	240	863	0	ENST00000245479.2:c.1429dup	p.Tyr477LeufsTer101	p.Y477Lfs*101	ENST00000245479	NM_000346.3	476	-/T																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121909224		P-0000209-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			361	215	248	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67660536	67660536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000209-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			677	315	376	0	ENST00000264010.4:c.1436G>A	p.Arg479His	p.R479H	ENST00000264010	NM_006565.3	479	cGc/cAc																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29556481	29556481	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0000209-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			204	123	132	0	ENST00000358273.4:c.2848C>T	p.Gln950Ter	p.Q950*	ENST00000358273	NM_001042492.2	950	Cag/Tag																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589619	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAGAATATGATAGATTATATGAAG			P-0000209-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			830	177	323	0	ENST00000274335.5:c.1382_1405dup	p.Glu468_Glu469insGlyGluTyrAspArgLeuTyrGlu	p.E468_E469insGEYDRLYE	ENST00000274335		461	cga/cGAGAATATGATAGATTATATGAAGga																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7573970	7573994	+	frameshift_variant	Frame_Shift_Del	DEL	CATCCTTGAGTTCCAAGGCCTCATT	CATCCTTGAGTTCCAAGGCCTCATT	-			P-0000209-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			445	306	331	0	ENST00000269305.4:c.1033_1057del	p.Asn345ProfsTer17	p.N345Pfs*17	ENST00000269305	NM_001126112.2	345	AATGAGGCCTTGGAACTCAAGGATGcc/cc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	226	338	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0014273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	506	792	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																														NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149509408	149509409	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	210	601	0	ENST00000261799.4:c.1490dup	p.Gln498AlafsTer34	p.Q498Afs*34	ENST00000261799	NM_002609.3	497	ctg/ctTg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578212	7578213	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	546	686	0	ENST00000269305.4:c.636dup	p.Arg213SerfsTer3	p.R213Sfs*3	ENST00000269305	NM_001126112.2	212	-/T																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67591104	67591115	+	inframe_deletion	In_Frame_Del	DEL	TTAAACCAGACC	TTAAACCAGACC	-			P-0012109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	113	350	0	ENST00000274335.5:c.1700_1711del	p.Lys567_Leu570del	p.K567_L570del	ENST00000274335		566	aTTAAACCAGACCtt/att																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156838333	156838333	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	435	622	0	ENST00000524377.1:c.611C>G	p.Ser204Trp	p.S204W	ENST00000524377	NM_002529.3	204	tCg/tGg																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47084177	47084177	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	182	386	0	ENST00000409792.3:c.7112T>A	p.Val2371Glu	p.V2371E	ENST00000409792	NM_014159.6	2371	gTg/gAg																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89690821	89690821	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0012109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	103	261	0	ENST00000371953.3:c.228T>A	p.Tyr76Ter	p.Y76*	ENST00000371953	NM_000314.4	76	taT/taA																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931588		P-0013582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1123	32	710	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0013582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	442	637	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	113	476	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142217556	142217557	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1096	112	636	0	ENST00000350721.4:c.5440dupA	p.Arg1814LysfsTer8	p.R1814Kfs*8	ENST00000350721	NM_001184.3	1814	aga/aAga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	130	472	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	112	542	1	ENST00000257430.4:c.4393_4394dupAG	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																													NEWRECORD																																		
PIK3CD	5293	MSKCC	GRCh37	1	9778972	9778972	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	76	295	0	ENST00000377346.4:c.1241C>T	p.Ala414Val	p.A414V	ENST00000377346	NM_005026.3	414	gCg/gTg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	141	551	0	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																													NEWRECORD																																		
ERCC4	2072	MSKCC	GRCh37	16	14026115	14026116	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	180	584	0	ENST00000311895.7:c.1081dup	p.Met361AsnfsTer4	p.M361Nfs*4	ENST00000311895	NM_005236.2	359	gaa/gAaa																																													NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	93	492	2	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1311	313	843	4	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																													NEWRECORD																																		
TRAF2	7186	MSKCC	GRCh37	9	139793211	139793212	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	230	677	1	ENST00000247668.2:c.26dup	p.Gly10TrpfsTer70	p.G10Wfs*70	ENST00000247668	NM_021138.3	7	acc/aCcc																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	154	423	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720712	89720712	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	15	95	0	ENST00000371953.3:c.867del	p.Val290Ter	p.V290*	ENST00000371953	NM_000314.4	288	gAa/ga																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70117594	70117594	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	231	480	0	ENST00000245479.2:c.66del	p.Ser23AlafsTer38	p.S23Afs*38	ENST00000245479	NM_000346.3	21	gCc/gc																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120457933	120457933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	83	373	0	ENST00000256646.2:c.7412C>T	p.Ala2471Val	p.A2471V	ENST00000256646	NM_024408.3	2471	gCg/gTg																																													NEWRECORD																																		
BAP1	8314	MSKCC	GRCh37	3	52442044	52442044	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	132	534	0	ENST00000460680.1:c.305A>G	p.Asn102Ser	p.N102S	ENST00000460680	NM_004656.3	102	aAc/aGc																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86659191	86659191	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	87	391	0	ENST00000274376.6:c.1480T>C	p.Tyr494His	p.Y494H	ENST00000274376	NM_002890.2	494	Tat/Cat																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112176903	112176903	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	124	514	0	ENST00000257430.4:c.5612A>T	p.Asp1871Val	p.D1871V	ENST00000257430	NM_000038.5	1871	gAt/gTt																																													NEWRECORD																																		
FGFR1	2260	MSKCC	GRCh37	8	38275842	38275842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	241	603	1	ENST00000425967.3:c.1427G>T	p.Arg476Leu	p.R476L	ENST00000425967	NM_001174067.1	476	cGg/cTg																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89653836	89653836	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	129	454	0	ENST00000371953.3:c.134T>C	p.Val45Ala	p.V45A	ENST00000371953	NM_000314.4	45	gTa/gCa																																													NEWRECORD																																		
FGFR2	2263	MSKCC	GRCh37	10	123298226	123298226	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	79	350	1	ENST00000358487.5:c.628C>T	p.Arg210Ter	p.R210*	ENST00000358487	NM_000141.4	210	Cga/Tga																																													NEWRECORD																																		
PAK1	5058	MSKCC	GRCh37	11	77047314	77047314	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	166	553	0	ENST00000356341.3:c.1230C>A	p.Phe410Leu	p.F410L	ENST00000356341	NM_002576.4	410	ttC/ttA																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118374798	118374798	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	148	566	0	ENST00000534358.1:c.8191A>G	p.Thr2731Ala	p.T2731A	ENST00000534358	NM_005933.3	2731	Act/Gct																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	402031	402031	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	92	560	0	ENST00000399788.2:c.4760A>G	p.Lys1587Arg	p.K1587R	ENST00000399788	NM_001042603.1	1587	aAg/aGg																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18658254	18658254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	42	516	0	ENST00000266497.5:c.3059C>A	p.Ala1020Asp	p.A1020D	ENST00000266497		1020	gCt/gAt																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46244913	46244913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	169	626	0	ENST00000334344.6:c.3007G>A	p.Val1003Ile	p.V1003I	ENST00000334344	NM_152641.2	1003	Gtc/Atc																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133214672	133214672	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	67	606	0	ENST00000320574.5:c.5606A>G	p.Asn1869Ser	p.N1869S	ENST00000320574	NM_006231.2	1869	aAc/aGc																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32954040	32954040	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	159	546	0	ENST00000380152.3:c.9107A>G	p.Gln3036Arg	p.Q3036R	ENST00000380152		3036	cAa/cGa																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48881543	48881543	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	156	457	2	ENST00000267163.4:c.264+1G>A		p.X88_splice	ENST00000267163	NM_000321.2	88																																														NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48955562	48955562	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	124	467	0	ENST00000267163.4:c.1678T>C	p.Ser560Pro	p.S560P	ENST00000267163	NM_000321.2	560	Tcc/Ccc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5225777	5225777	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751437578		P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	237	570	3	ENST00000357368.4:c.2455G>A	p.Ala819Thr	p.A819T	ENST00000357368	NM_002850.3	819	Gct/Act																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7166396	7166396	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	191	481	0	ENST00000302850.5:c.1630G>T	p.Glu544Ter	p.E544*	ENST00000302850	NM_000208.2	544	Gag/Tag																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11145589	11145589	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	101	323	0	ENST00000344626.4:c.3952-1G>T		p.X1318_splice	ENST00000344626	NM_003072.3	1318																																														NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41537197	41537197	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	40	594	0	ENST00000263253.7:c.2024T>C	p.Met675Thr	p.M675T	ENST00000263253	NM_001429.3	675	aTg/aCg																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55151647	55151647	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	140	495	0	ENST00000257290.5:c.2438del	p.Asn813IlefsTer20	p.N813Ifs*20	ENST00000257290	NM_006206.4	811	tcA/tc																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103528057	103528058	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	145	347	0	ENST00000355739.4:c.3370dup	p.Thr1124AsnfsTer26	p.T1124Nfs*26	ENST00000355739	NM_000123.3	1122	cca/ccAa																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139390736	139390736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	257	659	0	ENST00000277541.6:c.7455del	p.Ser2486ArgfsTer103	p.S2486Rfs*103	ENST00000277541	NM_017617.3	2485	ccC/cc																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117681119	117681120	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs748436511		P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	158	566	0	ENST00000368508.3:c.3500dup	p.Leu1167PhefsTer26	p.L1167Ffs*26	ENST00000368508	NM_002944.2	1167	tta/ttTa																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411702	63411703	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	204	356	0	ENST00000330258.3:c.1464dup	p.Leu489AlafsTer19	p.L489Afs*19	ENST00000330258	NM_152424.3	488	-/G																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43600551	43600551	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	74	614	1	ENST00000355710.3:c.778del	p.Val260Ter	p.V260*	ENST00000355710	NM_020975.4	259	ccG/cc																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212989590	212989591	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	92	492	0	ENST00000342788.4:c.119_120dup	p.Asp41LeufsTer26	p.D41Lfs*26	ENST00000342788	NM_005235.2	40	-/CT																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133209298	133209298	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	206	593	0	ENST00000320574.5:c.6088delG	p.Ala2030ProfsTer18	p.A2030Pfs*18	ENST00000320574	NM_006231.2	2030	Gcc/cc																																													NEWRECORD																																		
FH	2271	MSKCC	GRCh37	1	241671931	241671931	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	201	452	1	ENST00000366560.3:c.710A>G	p.Gln237Arg	p.Q237R	ENST00000366560	NM_000143.3	237	cAg/cGg																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37619309	37619309	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	125	247	0	ENST00000447079.4:c.985C>T	p.Arg329Ter	p.R329*	ENST00000447079	NM_015083.1	329	Cga/Tga																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39916517	39916517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	448	351	1	ENST00000378444.4:c.4486G>A	p.Ala1496Thr	p.A1496T	ENST00000378444	NM_001123385.1	1496	Gca/Aca																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67671654	67671655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	202	371	1	ENST00000264010.4:c.2070dup	p.Glu691ArgfsTer5	p.E691Rfs*5	ENST00000264010	NM_006565.3	688	gta/gtAa																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37627418	37627418	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	244	479	0	ENST00000447079.4:c.1337del	p.Lys446SerfsTer6	p.K446Sfs*6	ENST00000447079	NM_015083.1	445	Aaa/aa																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38060571	38060574	+	stop_lost	Nonstop_Mutation	ONP	TAGG	TAGG	AAGA			P-0008235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	315	721	0	ENST00000250448.2:c.1415_1418delinsTCTT	p.Ser472_Ter473delinsPheLeu	p.S472_*473delinsFL	ENST00000250448	NM_004496.3	472	tCCTAg/tTCTTg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0014553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	241	296	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0014553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	443	469	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0014553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	249	147	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																													NEWRECORD																																		
MAP2K1	5604	MSKCC	GRCh37	15	66727483	66727483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	195	343	0	ENST00000307102.5:c.199G>A	p.Asp67Asn	p.D67N	ENST00000307102	NM_002755.3	67	Gac/Aac																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32907420	32907421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1253401667		P-0014553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	371	248	0	ENST00000380152.3:c.1813dup	p.Ile605AsnfsTer11	p.I605Nfs*11	ENST00000380152		602	gga/ggAa																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88799200	88799200	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	71	535	2	ENST00000360948.2:c.185C>G	p.Ser62Ter	p.S62*	ENST00000360948	NM_001012338.2	62	tCa/tGa																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11141507	11141507	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	236	522	0	ENST00000344626.4:c.3484G>T	p.Gly1162Cys	p.G1162C	ENST00000344626	NM_003072.3	1162	Ggc/Tgc																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76855971	76855971	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	444	257	0	ENST00000373344.5:c.5629C>T	p.Gln1877Ter	p.Q1877*	ENST00000373344	NM_000489.3	1877	Cag/Tag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002902-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			542	153	486	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0002902-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			308	118	287	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120466426	120466426	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002902-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			678	182	471	0	ENST00000256646.2:c.4693T>A	p.Phe1565Ile	p.F1565I	ENST00000256646	NM_024408.3	1565	Ttc/Atc																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249542	153249542	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0002902-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	105	331	0	ENST00000281708.4:c.1237-1G>A		p.X413_splice	ENST00000281708	NM_033632.3	413																																														NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153332607	153332607	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002902-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	157	564	0	ENST00000281708.4:c.349G>T	p.Glu117Ter	p.E117*	ENST00000281708	NM_033632.3	117	Gag/Tag																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118369226	118369226	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002902-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	141	342	0	ENST00000534358.1:c.5944G>T	p.Asp1982Tyr	p.D1982Y	ENST00000534358	NM_005933.3	1982	Gat/Tat																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2134269	2134269	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201979616		P-0002902-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			534	158	518	0	ENST00000219476.3:c.4046C>T	p.Ala1349Val	p.A1349V	ENST00000219476	NM_000548.3	1349	gCg/gTg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173273	112173274	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0002902-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	110	369	2	ENST00000257430.4:c.1982_1983insA	p.Cys661Ter	p.C661*	ENST00000257430	NM_000038.5	661	tgt/tgAt																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46123695	46123695	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002902-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			456	112	321	0	ENST00000334344.6:c.77del	p.Phe26SerfsTer32	p.F26Sfs*32	ENST00000334344	NM_152641.2	26	Ttc/tc																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2132494	2132494	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002902-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			571	168	517	1	ENST00000219476.3:c.3874del	p.Ser1292ProfsTer33	p.S1292Pfs*33	ENST00000219476	NM_000548.3	1291	gTt/gt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0012889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	75	210	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227660269	227660270	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	46	417	3	ENST00000305123.5:c.3185dup	p.Gln1064ThrfsTer17	p.Q1064Tfs*17	ENST00000305123	NM_005544.2	1062	ggc/ggGc																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16261866	16261866	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	25	236	0	ENST00000375759.3:c.9131G>C	p.Ser3044Thr	p.S3044T	ENST00000375759	NM_015001.2	3044	aGt/aCt																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139390716	139390716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	410	899	0	ENST00000277541.6:c.7475C>T	p.Ser2492Leu	p.S2492L	ENST00000277541	NM_017617.3	2492	tCg/tTg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108236140	108236140	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	66	630	0	ENST00000278616.4:c.9076C>G	p.Leu3026Val	p.L3026V	ENST00000278616	NM_000051.3	3026	Ctc/Gtc																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99500414	99500414	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45526336		P-0012889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	43	721	0	ENST00000268035.6:c.3847G>A	p.Glu1283Lys	p.E1283K	ENST00000268035	NM_000875.3	1283	Gag/Aag																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5212488	5212488	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	37	617	0	ENST00000357368.4:c.4629G>C	p.Glu1543Asp	p.E1543D	ENST00000357368	NM_002850.3	1543	gaG/gaC																																													NEWRECORD																																		
NF2	4771	MSKCC	GRCh37	22	30067929	30067929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	94	490	1	ENST00000338641.4:c.1114G>A	p.Glu372Lys	p.E372K	ENST00000338641	NM_000268.3	372	Gaa/Aaa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112157659	112157659	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	120	423	0	ENST00000257430.4:c.1380del	p.Glu461SerfsTer6	p.E461Sfs*6	ENST00000257430	NM_000038.5	460	gAa/ga																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111509	8111519	+	frameshift_variant	Frame_Shift_Del	DEL	CCAATGGGGAC	CCAATGGGGAC	-			P-0012889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	78	650	0	ENST00000346208.3:c.997_1007del	p.Asn333CysfsTer15	p.N333Cfs*15	ENST00000346208		332	gCCAATGGGGAC/g																																													NEWRECORD																																		
HIST1H3J	8356	MSKCC	GRCh37	6	27858258	27858259	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0012889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	41	1535	0	ENST00000359303.2:c.312_313del	p.Phe105Ter	p.F105*	ENST00000359303	NM_003535.2	104	ctCTtt/cttt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	180	388	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	247	570	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																													NEWRECORD																																		
NEGR1	257194	MSKCC	GRCh37	1	72400905	72400905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	114	730	2	ENST00000357731.5:c.266C>A	p.Pro89His	p.P89H	ENST00000357731	NM_173808.2	89	cCt/cAt																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25462022	25462022	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	241	492	0	ENST00000264709.3:c.2385G>T	p.Trp795Cys	p.W795C	ENST00000264709	NM_175629.2	795	tgG/tgT																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89499520	89499520	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	138	291	0	ENST00000336596.2:c.2690G>T	p.Arg897Met	p.R897M	ENST00000336596	NM_005233.5	897	aGg/aTg																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249460	153249460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	100	452	0	ENST00000281708.4:c.1318G>A	p.Asp440Asn	p.D440N	ENST00000281708	NM_033632.3	440	Gat/Aat																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149499656	149499656	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	97	559	1	ENST00000261799.4:c.2617G>T	p.Glu873Ter	p.E873*	ENST00000261799	NM_002609.3	873	Gag/Tag																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180052917	180052917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	196	495	0	ENST00000261937.6:c.1373G>T	p.Trp458Leu	p.W458L	ENST00000261937	NM_182925.4	458	tGg/tTg																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32188861	32188861	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	187	462	0	ENST00000375023.3:c.693T>G	p.Cys231Trp	p.C231W	ENST00000375023	NM_004557.3	231	tgT/tgG																																													NEWRECORD																																		
TNFAIP3	7128	MSKCC	GRCh37	6	138200101	138200101	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	176	267	0	ENST00000237289.4:c.1519A>T	p.Ser507Cys	p.S507C	ENST00000237289	NM_001270507.1	507	Agc/Tgc																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140454014	140454014	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs139510971		P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	122	394	0	ENST00000288602.6:c.1714A>T	p.Ile572Phe	p.I572F	ENST00000288602	NM_004333.4	572	Atc/Ttc																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8500882	8500882	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs191877533		P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	104	439	0	ENST00000356435.5:c.2000C>T	p.Ser667Leu	p.S667L	ENST00000356435		667	tCg/tTg																																													NEWRECORD																																		
NTRK2	4915	MSKCC	GRCh37	9	87570239	87570239	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	142	308	0	ENST00000277120.3:c.1979C>G	p.Pro660Arg	p.P660R	ENST00000277120		660	cCg/cGg																																													NEWRECORD																																		
TGFBR1	7046	MSKCC	GRCh37	9	101911521	101911521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	188	497	0	ENST00000374994.4:c.1446G>T	p.Arg482Ser	p.R482S	ENST00000374994	NM_004612.2	482	agG/agT																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18656255	18656255	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	169	527	0	ENST00000266497.5:c.2934G>C	p.Lys978Asn	p.K978N	ENST00000266497		978	aaG/aaC																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63534359	63534359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	63	436	0	ENST00000307078.5:c.1162C>T	p.Arg388Cys	p.R388C	ENST00000307078	NM_004655.3	388	Cgc/Tgc																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40735521	40735521	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	231	456	0	ENST00000373198.4:c.3352A>G	p.Thr1118Ala	p.T1118A	ENST00000373198	NM_133170.3	1118	Acc/Gcc																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40979268	40979268	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	71	402	0	ENST00000373198.4:c.1865G>C	p.Ser622Thr	p.S622T	ENST00000373198	NM_133170.3	622	aGt/aCt																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70360689	70360689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			67	41	44	0	ENST00000374080.3:c.6249G>T	p.Gln2083His	p.Q2083H	ENST00000374080		2083	caG/caT																																													NEWRECORD																																		
ERCC2	2068	MSKCC	GRCh37	19	45864800	45864801	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	166	648	0	ENST00000391945.4:c.1218dup	p.Val407CysfsTer16	p.V407Cfs*16	ENST00000391945	NM_000400.3	406	-/T																																													NEWRECORD																																		
FGFR2	2263	MSKCC	GRCh37	10	123353328	123353329	+	start_lost	Translation_Start_Site	DNP	CC	CC	AA			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	237	484	0	ENST00000358487.5:c.3_4delinsTT	p.MetVal1_?2	p.MV1_?2	ENST00000358487	NM_000141.4	1	atGGtc/atTTtc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	169	279	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0009363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	355	279	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0009363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	177	298	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	184	220	0	ENST00000257430.4:c.4473dupT	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55371968	55371968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	83	125	0	ENST00000297316.4:c.658C>A	p.Pro220Thr	p.P220T	ENST00000297316	NM_022454.3	220	Ccc/Acc																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114910882	114910882	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0009363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1122	607	606	1	ENST00000543371.1:c.1001C>A	p.Ser334Ter	p.S334*	ENST00000543371	NM_001198531.1	334	tCa/tAa																																													NEWRECORD																																		
ERG	2078	MSKCC	GRCh37	21	39795422	39795422	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140580933		P-0009363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	343	386	0	ENST00000288319.7:c.298G>A	p.Val100Ile	p.V100I	ENST00000288319	NM_182918.3	100	Gtt/Att																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	91	454	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																													NEWRECORD																																		
BCL10	8915	MSKCC	GRCh37	1	85733545	85733545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	82	763	0	ENST00000370580.1:c.467C>T	p.Pro156Leu	p.P156L	ENST00000370580	NM_003921.4	156	cCa/cTa																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227662350	227662350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	47	386	0	ENST00000305123.5:c.1105C>T	p.Leu369Phe	p.L369F	ENST00000305123	NM_005544.2	369	Ctc/Ttc																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46244349	46244349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	43	459	0	ENST00000334344.6:c.2443G>T	p.Val815Phe	p.V815F	ENST00000334344	NM_152641.2	815	Gtt/Ttt																																													NEWRECORD																																		
TRAF7	84231	MSKCC	GRCh37	16	2223195	2223195	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	57	422	0	ENST00000326181.6:c.807C>G	p.Ile269Met	p.I269M	ENST00000326181	NM_032271.2	269	atC/atG																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9916124	9916124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	23	375	0	ENST00000330684.3:c.2165C>T	p.Thr722Met	p.T722M	ENST00000330684	NM_001134407.1	722	aCg/aTg																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15271527	15271527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	69	578	0	ENST00000263388.2:c.6912G>T	p.Gln2304His	p.Q2304H	ENST00000263388	NM_000435.2	2304	caG/caT																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0012811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	85	558	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																													NEWRECORD																																		
ERCC3	2071	MSKCC	GRCh37	2	128028956	128028956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	51	548	0	ENST00000285398.2:c.1901G>A	p.Arg634His	p.R634H	ENST00000285398	NM_000122.1	634	cGt/cAt																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11134277	11134277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	28	493	0	ENST00000344626.4:c.2943G>T	p.Lys981Asn	p.K981N	ENST00000344626	NM_003072.3	981	aaG/aaT																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11170525	11170525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	28	417	1	ENST00000344626.4:c.4732G>T	p.Glu1578Ter	p.E1578*	ENST00000344626	NM_003072.3	1578	Gag/Tag																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103518257	103518258	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	51	296	0	ENST00000355739.4:c.2198dup	p.Leu733PhefsTer69	p.L733Ffs*69	ENST00000355739	NM_000123.3	732	aat/aaTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	132	298	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	65	128	0	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157100414	157100414	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	10	52	0	ENST00000346085.5:c.1351T>C	p.Ser451Pro	p.S451P	ENST00000346085	NM_020732.3	451	Tcg/Ccg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106159	27106159	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	81	226	0	ENST00000324856.7:c.5770G>T	p.Glu1924Ter	p.E1924*	ENST00000324856	NM_006015.4	1924	Gag/Tag																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134898738	134898738	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	69	501	0	ENST00000398015.3:c.1796C>A	p.Thr599Asn	p.T599N	ENST00000398015	NM_004441.4	599	aCt/aAt																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66280144	66280144	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	67	230	0	ENST00000273854.3:c.1545C>A	p.Tyr515Ter	p.Y515*	ENST00000273854	NM_004439.5	515	taC/taA																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114901047	114901047	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	125	641	1	ENST00000543371.1:c.657C>A	p.His219Gln	p.H219Q	ENST00000543371	NM_001198531.1	219	caC/caA																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18641473	18641473	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	63	364	0	ENST00000266497.5:c.2472G>C	p.Leu824Phe	p.L824F	ENST00000266497		824	ttG/ttC																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57858905	57858905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	227	645	0	ENST00000228682.2:c.401G>C	p.Gly134Ala	p.G134A	ENST00000228682	NM_005269.2	134	gGa/gCa																																													NEWRECORD																																		
CDK8	1024	MSKCC	GRCh37	13	26959346	26959346	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	45	212	0	ENST00000381527.3:c.515-2A>T		p.X172_splice	ENST00000381527	NM_001260.1	172																																														NEWRECORD																																		
FOXO1	2308	MSKCC	GRCh37	13	41134313	41134313	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs146471778		P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	195	705	0	ENST00000379561.5:c.1315A>G	p.Ile439Val	p.I439V	ENST00000379561	NM_002015.3	439	Ata/Gta																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9862891	9862891	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	70	339	0	ENST00000330684.3:c.2412G>C	p.Lys804Asn	p.K804N	ENST00000330684	NM_001134407.1	804	aaG/aaC																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81946314	81946314	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	184	495	0	ENST00000359376.3:c.2047A>G	p.Thr683Ala	p.T683A	ENST00000359376	NM_002661.3	683	Acc/Gcc																																													NEWRECORD																																		
RAD51D	5892	MSKCC	GRCh37	17	33428242	33428242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	118	335	0	ENST00000335858.7:c.545G>A	p.Cys182Tyr	p.C182Y	ENST00000335858	NM_133629.2	182	tGt/tAt																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604743	48604743	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	91	344	0	ENST00000342988.3:c.1565C>G	p.Pro522Arg	p.P522R	ENST00000342988	NM_005359.5	522	cCt/cGt																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2222166	2222166	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	163	369	0	ENST00000398665.3:c.2998G>T	p.Ala1000Ser	p.A1000S	ENST00000398665	NM_032482.2	1000	Gcc/Tcc																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40790156	40790156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	14	143	0	ENST00000373198.4:c.2575C>A	p.Gln859Lys	p.Q859K	ENST00000373198	NM_133170.3	859	Cag/Aag																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41554503	41554503	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	120	307	0	ENST00000263253.7:c.3589A>T	p.Arg1197Trp	p.R1197W	ENST00000263253	NM_001429.3	1197	Agg/Tgg																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76889095	76889095	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	141	258	0	ENST00000373344.5:c.4915G>T	p.Glu1639Ter	p.E1639*	ENST00000373344	NM_000489.3	1639	Gag/Tag																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40790110	40790110	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	29	221	0	ENST00000373198.4:c.2621del	p.Pro874LeufsTer4	p.P874Lfs*4	ENST00000373198	NM_133170.3	874	cCt/ct																																													NEWRECORD																																		
NFKBIA	4792	MSKCC	GRCh37	14	35872546	35872547	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	161	490	1	ENST00000216797.5:c.356dup	p.Ile120AspfsTer9	p.I120Dfs*9	ENST00000216797	NM_020529.2	119	gtg/gtTg																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32183097	32183098	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	265	468	0	ENST00000375023.3:c.1926_1927delinsAA	p.Asp642_Gln643delinsGluLys	p.D642_Q643delinsEK	ENST00000375023	NM_004557.3	642	gaCCag/gaAAag																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11141534	11141536	+	missense_variant	Missense_Mutation	ONP	GTG	GTG	TTT			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	134	359	1	ENST00000344626.4:c.3511_3513delinsTTT	p.Val1171Phe	p.V1171F	ENST00000344626	NM_003072.3	1171	GTG/TTT																																													NEWRECORD																																		
FUBP1	8880	MSKCC	GRCh37	1	78429978	78429978	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	139	233	0	ENST00000370768.2:c.901del	p.Ile301TyrfsTer22	p.I301Yfs*22	ENST00000370768	NM_003902.3	301	Ata/ta																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	130	240	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	131	309	0	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	173	288	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103510737	103510737	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146833751		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	119	276	0	ENST00000355739.4:c.641G>A	p.Arg214His	p.R214H	ENST00000355739	NM_000123.3	214	cGc/cAc																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156841505	156841505	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145222195		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	216	315	0	ENST00000524377.1:c.808G>A	p.Asp270Asn	p.D270N	ENST00000524377	NM_002529.3	270	Gat/Aat																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	223	385	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	146	290	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3789591	3789591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	165	253	0	ENST00000262367.5:c.4268delC	p.Pro1423LeufsTer36	p.P1423Lfs*36	ENST00000262367	NM_004380.2	1423	cCt/ct																																													NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28578215	28578216	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	152	313	0	ENST00000241453.7:c.2955_2956delTC	p.Pro986AlafsTer27	p.P986Afs*27	ENST00000241453	NM_004119.2	985	tcTCcg/tccg																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	128	225	0	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78936354	78936354	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	142	325	0	ENST00000306801.3:c.3790delC	p.Gln1264ArgfsTer4	p.Q1264Rfs*4	ENST00000306801	NM_020761.2	1262	caC/ca																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	79	188	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	163	263	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11097624	11097625	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1165714406		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	187	415	0	ENST00000344626.4:c.810dup	p.Gly271ArgfsTer16	p.G271Rfs*16	ENST00000344626	NM_003072.3	268	-/C																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11317105	11317105	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	181	360	1	ENST00000361445.4:c.389T>C	p.Ile130Thr	p.I130T	ENST00000361445	NM_004958.3	130	aTt/aCt																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30713403	30713403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	32	208	0	ENST00000359013.4:c.803C>A	p.Pro268His	p.P268H	ENST00000359013	NM_001024847.2	268	cCc/cAc																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52620541	52620541	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141958485		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	233	316	0	ENST00000394830.3:c.3212G>A	p.Arg1071His	p.R1071H	ENST00000394830	NM_018313.4	1071	cGc/cAc																																													NEWRECORD																																		
KIT	3815	MSKCC	GRCh37	4	55575646	55575646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	189	343	0	ENST00000288135.5:c.1172C>T	p.Thr391Ile	p.T391I	ENST00000288135	NM_000222.2	391	aCa/aTa																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106197564	106197564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	201	343	1	ENST00000380013.4:c.5897G>A	p.Arg1966His	p.R1966H	ENST00000380013	NM_001127208.2	1966	cGt/cAt																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131951787	131951787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	158	243	0	ENST00000265335.6:c.3129G>T	p.Lys1043Asn	p.K1043N	ENST00000265335		1043	aaG/aaT																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	93979193	93979193	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	178	363	0	ENST00000369303.4:c.1633+2T>C		p.X545_splice	ENST00000369303	NM_004440.3	545																																														NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	94129026	94129026	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	279	454	0	ENST00000369303.4:c.34A>G	p.Ile12Val	p.I12V	ENST00000369303	NM_004440.3	12	Att/Gtt																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55272947	55272947	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	93	177	0	ENST00000275493.2:c.3272-2A>G		p.X1091_splice	ENST00000275493	NM_005228.3	1091																																														NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145738714	145738714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	148	229	2	ENST00000428558.2:c.2350C>T	p.Arg784Trp	p.R784W	ENST00000428558	NM_004260.3	784	Cgg/Tgg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139395186	139395186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	187	344	2	ENST00000277541.6:c.5752G>A	p.Ala1918Thr	p.A1918T	ENST00000277541	NM_017617.3	1918	Gcc/Acc																																													NEWRECORD																																		
SDHD	6392	MSKCC	GRCh37	11	111959722	111959722	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	130	167	0	ENST00000375549.3:c.301C>G	p.Leu101Val	p.L101V	ENST00000375549	NM_003002.3	101	Ctt/Gtt																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118307462	118307462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	94	198	0	ENST00000534358.1:c.235G>A	p.Ala79Thr	p.A79T	ENST00000534358	NM_005933.3	79	Gcc/Acc																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49416073	49416073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	277	429	0	ENST00000301067.7:c.16402G>A	p.Gly5468Ser	p.G5468S	ENST00000301067	NM_003482.3	5468	Ggc/Agc																																													NEWRECORD																																		
SH2B3	10019	MSKCC	GRCh37	12	111885931	111885931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	290	428	0	ENST00000341259.2:c.1553G>A	p.Arg518Gln	p.R518Q	ENST00000341259	NM_005475.2	518	cGa/cAa																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32907510	32907510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	145	186	1	ENST00000380152.3:c.1895C>A	p.Ala632Glu	p.A632E	ENST00000380152		632	gCa/gAa																																													NEWRECORD																																		
NKX2-1	7080	MSKCC	GRCh37	14	36986997	36986997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	124	260	0	ENST00000354822.5:c.692C>T	p.Thr231Met	p.T231M	ENST00000354822	NM_001079668.2	231	aCg/aTg																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42058610	42058610	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	279	578	0	ENST00000219905.7:c.8330A>G	p.Lys2777Arg	p.K2777R	ENST00000219905	NM_001164273.1	2777	aAa/aGa																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72830204	72830204	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	217	475	0	ENST00000268489.5:c.6377C>A	p.Ala2126Glu	p.A2126E	ENST00000268489	NM_006885.3	2126	gCg/gAg																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72831344	72831344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	215	429	0	ENST00000268489.5:c.5237C>T	p.Ala1746Val	p.A1746V	ENST00000268489	NM_006885.3	1746	gCc/gTc																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15961337	15961337	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	189	307	1	ENST00000268712.3:c.6052C>T	p.Arg2018Ter	p.R2018*	ENST00000268712	NM_006311.3	2018	Cga/Tga																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15964862	15964862	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	224	364	0	ENST00000268712.3:c.5734A>G	p.Lys1912Glu	p.K1912E	ENST00000268712	NM_006311.3	1912	Aaa/Gaa																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29552112	29552112	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	83	186	0	ENST00000358273.4:c.1846-1G>A		p.X616_splice	ENST00000358273	NM_001042492.2	616																																														NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7117401	7117401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	174	290	0	ENST00000302850.5:c.3815G>A	p.Cys1272Tyr	p.C1272Y	ENST00000302850	NM_000208.2	1272	tGc/tAc																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11138627	11138627	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	159	205	0	ENST00000344626.4:c.3382+1G>T		p.X1128_splice	ENST00000344626	NM_003072.3	1128																																														NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15272244	15272244	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1168179879		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	13	173	0	ENST00000263388.2:c.6195G>C	p.Arg2065Ser	p.R2065S	ENST00000263388	NM_000435.2	2065	agG/agC																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41758265	41758265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	193	331	0	ENST00000301178.4:c.1721G>A	p.Cys574Tyr	p.C574Y	ENST00000301178	NM_021913.4	574	tGc/tAc																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31023957	31023957	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139435094		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	93	318	0	ENST00000375687.4:c.3442C>T	p.Arg1148Cys	p.R1148C	ENST00000375687	NM_015338.5	1148	Cgc/Tgc																																													NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31375171	31375171	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140395707		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	184	368	0	ENST00000328111.2:c.568C>T	p.Arg190Cys	p.R190C	ENST00000328111	NM_006892.3	190	Cgc/Tgc																																													NEWRECORD																																		
ICOSLG	23308	MSKCC	GRCh37	21	45655425	45655425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	141	252	0	ENST00000407780.3:c.427G>A	p.Val143Ile	p.V143I	ENST00000407780	NM_001283052.1	143	Gtc/Atc																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411486	63411486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	194	450	0	ENST00000330258.3:c.1681C>A	p.Leu561Ile	p.L561I	ENST00000330258	NM_152424.3	561	Cta/Ata																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151859851	151859851	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	109	255	0	ENST00000262189.6:c.10811del	p.Lys3604ArgfsTer26	p.K3604Rfs*26	ENST00000262189	NM_170606.2	3604	aAg/ag																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52623186	52623187	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	105	318	0	ENST00000394830.3:c.2864dup	p.Asn955LysfsTer27	p.N955Kfs*27	ENST00000394830	NM_018313.4	955	aac/aaAc																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49435198	49435199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	33	122	0	ENST00000301067.7:c.6354dupC	p.Ala2119ArgfsTer36	p.A2119Rfs*36	ENST00000301067	NM_003482.3	2118	-/C																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89350331	89350332	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	149	559	0	ENST00000301030.4:c.2618_2619del	p.Val873GlyfsTer42	p.V873Gfs*42	ENST00000301030	NM_001256183.1	873	gTG/g																																													NEWRECORD																																		
IGF2	3481	MSKCC	GRCh37	11	2154251	2154251	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	104	312	0	ENST00000434045.2:c.677del	p.Gly226AlafsTer30	p.G226Afs*30	ENST00000434045	NM_001127598.1	226	gGc/gc																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118347686	118347687	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	151	299	0	ENST00000534358.1:c.3327dup	p.Asn1110GlufsTer2	p.N1110Efs*2	ENST00000534358	NM_005933.3	1108	atg/atGg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49434378	49434378	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	175	309	0	ENST00000301067.7:c.7175del	p.Pro2392LeufsTer34	p.P2392Lfs*34	ENST00000301067	NM_003482.3	2392	cCt/ct																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48027196	48027196	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	108	259	0	ENST00000234420.5:c.2079delA	p.Lys693AsnfsTer43	p.K693Nfs*43	ENST00000234420	NM_000179.2	692	Aaa/aa																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131944381	131944382	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	160	264	1	ENST00000265335.6:c.2801dup	p.Asn934LysfsTer10	p.N934Kfs*10	ENST00000265335		931	-/A																																													NEWRECORD																																		
BAP1	8314	MSKCC	GRCh37	3	52436692	52436692	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0002792-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			399	24	291	0	ENST00000460680.1:c.1984-2A>G		p.X662_splice	ENST00000460680	NM_004656.3	662																																														NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	142950062	142950062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002792-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			377	21	195	0	ENST00000262992.4:c.2648G>A	p.Gly883Glu	p.G883E	ENST00000262992	NM_001101669.1	883	gGa/gAa																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47038717	47038717	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0002792-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			92	82	79	0	ENST00000329236.7:c.494-1G>A		p.X165_splice	ENST00000329236	NM_001204466.1	165																																														NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174808	112174817	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGATCAGC	GTGGATCAGC	-			P-0002792-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			386	117	234	0	ENST00000257430.4:c.3517_3526del	p.Val1173LeufsTer6	p.V1173Lfs*6	ENST00000257430	NM_000038.5	1173	GTGGATCAGCct/ct																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578265	7578266	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002792-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			299	146	285	0	ENST00000269305.4:c.583dupA	p.Ile195AsnfsTer14	p.I195Nfs*14	ENST00000269305	NM_001126112.2	195	atc/aAtc																																													NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0005778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	420	430	2	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0005778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	205	513	1	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47165791	47165791	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	22	535	0	ENST00000409792.3:c.335C>A	p.Ser112Ter	p.S112*	ENST00000409792	NM_014159.6	112	tCg/tAg																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	11998891	11998891	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0005778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	114	374	1	ENST00000353533.5:c.394-1G>T		p.X132_splice	ENST00000353533	NM_003010.3	132																																														NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106157346	106157352	+	frameshift_variant	Frame_Shift_Del	DEL	AATAAAG	AATAAAG	-			P-0005778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	119	461	2	ENST00000380013.4:c.2255_2261del	p.Asn752ArgfsTer59	p.N752Rfs*59	ENST00000380013	NM_001127208.2	749	caAATAAAG/ca																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123215313	123215330	+	inframe_deletion	In_Frame_Del	DEL	ACGTTTTGCTTTAACTTT	ACGTTTTGCTTTAACTTT	-			P-0005778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	373	746	0	ENST00000218089.9:c.2859_2876del	p.Arg954_Phe959del	p.R954_F959del	ENST00000218089	NM_001042749.1	953	cgACGTTTTGCTTTAACTTTt/cgt																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29559799	29559799	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	GAAAC			P-0005778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	150	610	1	ENST00000358273.4:c.3396delinsGAAAC	p.Gly1133LysfsTer63	p.G1133Kfs*63	ENST00000358273	NM_001042492.2	1132	cgT/cgGAAAC																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	59	391	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
FOXO1	2308	MSKCC	GRCh37	13	41134151	41134151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	47	692	1	ENST00000379561.5:c.1477G>T	p.Gly493Cys	p.G493C	ENST00000379561	NM_002015.3	493	Ggc/Tgc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7573987	7573987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	60	513	0	ENST00000269305.4:c.1040C>A	p.Ala347Asp	p.A347D	ENST00000269305	NM_001126112.2	347	gCc/gAc																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63412008	63412008	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	30	820	3	ENST00000330258.3:c.1159G>T	p.Glu387Ter	p.E387*	ENST00000330258	NM_152424.3	387	Gag/Tag																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86665642	86665643	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGATAGTAGTTCAGCACTTTAGTGAAGAA			P-0007753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	10	297	0	ENST00000274376.6:c.1626_1655dup	p.Gln542_Glu551dup	p.Q542_E551dup	ENST00000274376	NM_002890.2	542	-/CAGATAGTAGTTCAGCACTTTAGTGAAGAA																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1218483	1218483	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	63	460	0	ENST00000326873.7:c.358del	p.Glu120LysfsTer9	p.E120Kfs*9	ENST00000326873	NM_000455.4	120	Gaa/aa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs864622237		P-0005070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	492	393	0	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0005070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	86	299	1	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49924886	49924886	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	255	479	0	ENST00000296474.3:c.4057T>C	p.Tyr1353His	p.Y1353H	ENST00000296474	NM_002447.2	1353	Tat/Cat																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112177466	112177466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	129	378	1	ENST00000257430.4:c.6175G>A	p.Asp2059Asn	p.D2059N	ENST00000257430	NM_000038.5	2059	Gat/Aat																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180045918	180045918	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0005070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	74	214	0	ENST00000261937.6:c.2853G>C	p.Glu951Asp	p.E951D	ENST00000261937	NM_182925.4	951	gaG/gaC																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32169981	32169981	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	99	426	0	ENST00000375023.3:c.3627C>A	p.Asp1209Glu	p.D1209E	ENST00000375023	NM_004557.3	1209	gaC/gaA																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	375	502	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
XPO1	7514	MSKCC	GRCh37	2	61719259	61719259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1457	471	614	0	ENST00000401558.2:c.1798G>A	p.Val600Ile	p.V600I	ENST00000401558	NM_003400.3	600	Gtt/Att																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	174	281	0	ENST00000257430.4:c.3871C>G	p.Gln1291Glu	p.Q1291E	ENST00000257430	NM_000038.5	1291	Cag/Gag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175221	112175221	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	201	320	0	ENST00000257430.4:c.3930del	p.Ile1311LeufsTer10	p.I1311Lfs*10	ENST00000257430	NM_000038.5	1310	aaG/aa																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720805	89720806	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	106	158	0	ENST00000371953.3:c.959dupT	p.Leu320PhefsTer5	p.L320Ffs*5	ENST00000371953	NM_000314.4	319	act/acTt																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46230555	46230556	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0010219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	428	590	0	ENST00000334344.6:c.805_806delTT	p.Leu269IlefsTer10	p.L269Ifs*10	ENST00000334344	NM_152641.2	268	tcTTta/tcta																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108153439	108153440	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TT	TT	G			P-0010219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	768	485	0	ENST00000278616.4:c.3579_3580delinsG	p.Leu1194Ter	p.L1194*	ENST00000278616	NM_000051.3	1193	gtTTta/gtGta																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	150001231	150001231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	73	552	0	ENST00000253339.5:c.2373G>A	p.Met791Ile	p.M791I	ENST00000253339		791	atG/atA																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53224578	53224579	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0014310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	65	614	0	ENST00000375401.3:c.3133_3134dup	p.Pro1046ThrfsTer10	p.P1046Tfs*10	ENST00000375401	NM_004187.3	1045	tac/taTAc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0013046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	230	351	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0013046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	482	434	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106157920	106157920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	255	292	0	ENST00000380013.4:c.2821C>T	p.Pro941Ser	p.P941S	ENST00000380013	NM_001127208.2	941	Cct/Tct																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56168484	56168484	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	143	250	0	ENST00000399503.3:c.1440A>T	p.Arg480Ser	p.R480S	ENST00000399503	NM_005921.1	480	agA/agT																																													NEWRECORD																																		
XRCC2	7516	MSKCC	GRCh37	7	152357845	152357845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1371	470	797	1	ENST00000359321.1:c.62G>A	p.Arg21Lys	p.R21K	ENST00000359321	NM_005431.1	21	aGa/aAa																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73346334	73346334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	220	430	0	ENST00000377767.4:c.1466C>A	p.Ala489Asp	p.A489D	ENST00000377767	NM_014953.3	489	gCt/gAt																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29657448	29657448	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	280	497	0	ENST00000358273.4:c.5744T>C	p.Leu1915Pro	p.L1915P	ENST00000358273	NM_001042492.2	1915	cTg/cCg																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41243571	41243571	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	420	694	0	ENST00000357654.3:c.3977A>G	p.His1326Arg	p.H1326R	ENST00000357654	NM_007294.3	1326	cAt/cGt																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10244973	10244973	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	376	500	0	ENST00000340748.4:c.4736C>G	p.Ala1579Gly	p.A1579G	ENST00000340748		1579	gCc/gGc																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25965003	25965004	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0013046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	156	538	0	ENST00000435504.4:c.4202dup	p.Tyr1401Ter	p.Y1401*	ENST00000435504		1401	tac/taAc																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	136	490	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70332337	70332337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	168	678	2	ENST00000373644.4:c.242G>A	p.Arg81His	p.R81H	ENST00000373644	NM_030625.2	81	cGc/cAc																																													NEWRECORD																																		
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	122	486	0	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	109	412	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15296358	15296358	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	63	674	0	ENST00000263388.2:c.2084del	p.Pro695ArgfsTer165	p.P695Rfs*165	ENST00000263388	NM_000435.2	695	cCg/cg																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41743932	41743933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778012871		P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	150	865	1	ENST00000301178.4:c.874dup	p.His292ProfsTer47	p.H292Pfs*47	ENST00000301178	NM_021913.4	289	-/C																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42796883	42796883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	78	760	3	ENST00000575354.2:c.3347del	p.Pro1116GlnfsTer45	p.P1116Qfs*45	ENST00000575354	NM_015125.3	1114	gCc/gc																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	63	508	0	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579419	7579420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	74	603	0	ENST00000269305.4:c.267dup	p.Ser90LeufsTer59	p.S90Lfs*59	ENST00000269305	NM_001126112.2	89	-/C																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140439695	140439695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	85	255	0	ENST00000288602.6:c.2044C>T	p.Arg682Trp	p.R682W	ENST00000288602	NM_004333.4	682	Cgg/Tgg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	195	893	2	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2136799	2136799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	90	729	4	ENST00000219476.3:c.4916G>A	p.Arg1639His	p.R1639H	ENST00000219476	NM_000548.3	1639	cGc/cAc																																													NEWRECORD																																		
NCOA3	8202	MSKCC	GRCh37	20	46279861	46279866	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	47	468	1	ENST00000371998.3:c.3810_3815delACAGCA	p.Gln1275_Gln1276del	p.Q1275_Q1276del	ENST00000371998		1263	CAGCAA/-																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81381529	81381529	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	102	778	1	ENST00000222390.5:c.532C>T	p.Arg178Ter	p.R178*	ENST00000222390	NM_000601.4	178	Cga/Tga																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11144018	11144018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	63	561	0	ENST00000344626.4:c.3599G>A	p.Arg1200His	p.R1200H	ENST00000344626	NM_003072.3	1200	cGt/cAt																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76939673	76939674	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	91	470	0	ENST00000373344.5:c.1074dupA	p.Leu359ThrfsTer3	p.L359Tfs*3	ENST00000373344	NM_000489.3	358	-/A																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10250948	10250948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	57	479	0	ENST00000340748.4:c.3532C>T	p.Arg1178Trp	p.R1178W	ENST00000340748		1178	Cgg/Tgg																																													NEWRECORD																																		
TNFAIP3	7128	MSKCC	GRCh37	6	138199945	138199945	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	28	384	0	ENST00000237289.4:c.1368delG	p.Pro457LeufsTer20	p.P457Lfs*20	ENST00000237289	NM_001270507.1	455	Ggg/gg																																													NEWRECORD																																		
RARA	5914	MSKCC	GRCh37	17	38512377	38512377	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	47	457	1	ENST00000254066.5:c.1293delG	p.Arg432GlyfsTer211	p.R432Gfs*211	ENST00000254066	NM_000964.3	430	Ggg/gg																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56448310	56448310	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	104	589	1	ENST00000407977.2:c.337C>T	p.Arg113Ter	p.R113*	ENST00000407977		113	Cga/Tga																																													NEWRECORD																																		
ERRFI1	54206	MSKCC	GRCh37	1	8073643	8073643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	111	1076	3	ENST00000377482.5:c.1016C>T	p.Pro339Leu	p.P339L	ENST00000377482	NM_018948.3	339	cCg/cTg																																													NEWRECORD																																		
MYCL1	4610	MSKCC	GRCh37	1	40366679	40366679	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	96	443	0	ENST00000397332.2:c.518C>G	p.Ala173Gly	p.A173G	ENST00000397332	NM_001033082.2	173	gCc/gGc																																													NEWRECORD																																		
ERCC3	2071	MSKCC	GRCh37	2	128050226	128050226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	148	637	1	ENST00000285398.2:c.431G>A	p.Ser144Asn	p.S144N	ENST00000285398	NM_000122.1	144	aGc/aAc																																													NEWRECORD																																		
PMS1	5378	MSKCC	GRCh37	2	190708754	190708754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	170	756	0	ENST00000441310.2:c.647C>T	p.Thr216Ile	p.T216I	ENST00000441310	NM_000534.4	216	aCt/aTt																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198262823	198262823	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	54	426	0	ENST00000335508.6:c.3152C>A	p.Ser1051Tyr	p.S1051Y	ENST00000335508	NM_012433.2	1051	tCt/tAt																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71015194	71015194	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	33	494	0	ENST00000318789.4:c.1736A>G	p.Glu579Gly	p.E579G	ENST00000318789	NM_032682.5	579	gAg/gGg																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134644697	134644697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	40	486	0	ENST00000398015.3:c.98G>A	p.Gly33Asp	p.G33D	ENST00000398015	NM_004441.4	33	gGc/gAc																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134898732	134898732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	99	779	0	ENST00000398015.3:c.1790C>T	p.Pro597Leu	p.P597L	ENST00000398015	NM_004441.4	597	cCc/cTc																																													NEWRECORD																																		
KIT	3815	MSKCC	GRCh37	4	55602716	55602716	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	82	724	0	ENST00000288135.5:c.2537A>G	p.Tyr846Cys	p.Y846C	ENST00000288135	NM_000222.2	846	tAc/tGc																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153251933	153251933	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	212	915	0	ENST00000281708.4:c.1073A>G	p.Gln358Arg	p.Q358R	ENST00000281708	NM_033632.3	358	cAg/cGg																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149500531	149500531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	143	634	0	ENST00000261799.4:c.2506G>A	p.Glu836Lys	p.E836K	ENST00000261799	NM_002609.3	836	Gaa/Aaa																																													NEWRECORD																																		
IRF4	3662	MSKCC	GRCh37	6	401745	401745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	47	524	0	ENST00000380956.4:c.1067G>A	p.Cys356Tyr	p.C356Y	ENST00000380956	NM_001195286.1	356	tGc/tAc																																													NEWRECORD																																		
HLA-A	3105	MSKCC	GRCh37	6	29910684	29910684	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	71	712	0	ENST00000376809.5:c.224G>A	p.Trp75Ter	p.W75*	ENST00000376809	NM_002116.7	75	tGg/tAg																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117687297	117687297	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	151	761	0	ENST00000368508.3:c.2754G>C	p.Leu918Phe	p.L918F	ENST00000368508	NM_002944.2	918	ttG/ttC																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	150004937	150004937	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	260	770	2	ENST00000253339.5:c.1288C>T	p.Gln430Ter	p.Q430*	ENST00000253339		430	Caa/Taa																																													NEWRECORD																																		
INHBA	3624	MSKCC	GRCh37	7	41739848	41739848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	188	803	1	ENST00000242208.4:c.125C>T	p.Ala42Val	p.A42V	ENST00000242208	NM_002192.2	42	gCc/gTc																																													NEWRECORD																																		
NKX3-1	4824	MSKCC	GRCh37	8	23539063	23539063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	128	608	4	ENST00000380871.4:c.376C>T	p.Arg126Cys	p.R126C	ENST00000380871	NM_006167.3	126	Cgc/Tgc																																													NEWRECORD																																		
JAK2	3717	MSKCC	GRCh37	9	5089702	5089702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	62	615	1	ENST00000381652.3:c.2600G>A	p.Arg867Gln	p.R867Q	ENST00000381652	NM_004972.3	867	cGg/cAg																																													NEWRECORD																																		
TRAF2	7186	MSKCC	GRCh37	9	139814869	139814869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	94	940	1	ENST00000247668.2:c.862G>A	p.Val288Ile	p.V288I	ENST00000247668	NM_021138.3	288	Gtc/Atc																																													NEWRECORD																																		
LMO1	4004	MSKCC	GRCh37	11	8252049	8252049	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	38	430	0	ENST00000335790.3:c.28G>A	p.Val10Met	p.V10M	ENST00000335790	NM_002315.2	10	Gtg/Atg																																													NEWRECORD																																		
MRE11A	4361	MSKCC	GRCh37	11	94194110	94194110	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773469981		P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	99	775	3	ENST00000323929.3:c.1318G>A	p.Ala440Thr	p.A440T	ENST00000323929	NM_005591.3	440	Gca/Aca																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108199783	108199783	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	84	357	0	ENST00000278616.4:c.7125T>A	p.Ser2375Arg	p.S2375R	ENST00000278616	NM_000051.3	2375	agT/agA																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57859598	57859598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	178	907	2	ENST00000228682.2:c.652C>T	p.Arg218Trp	p.R218W	ENST00000228682	NM_005269.2	218	Cgg/Tgg																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133248859	133248859	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149296223		P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	77	717	1	ENST00000320574.5:c.1736G>A	p.Arg579His	p.R579H	ENST00000320574	NM_006231.2	579	cGc/cAc																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67660585	67660585	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	223	925	0	ENST00000264010.4:c.1485T>G	p.Phe495Leu	p.F495L	ENST00000264010	NM_006565.3	495	ttT/ttG																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68853315	68853315	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	100	562	0	ENST00000261769.5:c.1698A>G	p.Ile566Met	p.I566M	ENST00000261769	NM_004360.3	566	atA/atG																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15298099	15298099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	65	638	1	ENST00000263388.2:c.1657C>T	p.Pro553Ser	p.P553S	ENST00000263388	NM_000435.2	553	Cca/Tca																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15376430	15376430	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201736007		P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	189	967	2	ENST00000263377.2:c.584C>T	p.Thr195Met	p.T195M	ENST00000263377	NM_058243.2	195	aCg/aTg																																													NEWRECORD																																		
MEF2B	100271849	MSKCC	GRCh37	19	19257409	19257409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	128	850	1	ENST00000162023.5:c.724G>A	p.Gly242Arg	p.G242R	ENST00000162023		242	Gga/Aga																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31021497	31021497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	142	592	1	ENST00000375687.4:c.1496G>A	p.Arg499His	p.R499H	ENST00000375687	NM_015338.5	499	cGt/cAt																																													NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31395624	31395624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	87	648	1	ENST00000328111.2:c.2477G>A	p.Arg826His	p.R826H	ENST00000328111	NM_006892.3	826	cGc/cAc																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36259318	36259318	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	37	264	0	ENST00000300305.3:c.173T>C	p.Leu58Pro	p.L58P	ENST00000300305		58	cTg/cCg																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117678970	117678970	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	43	397	0	ENST00000368508.3:c.3851del	p.Leu1284Ter	p.L1284*	ENST00000368508	NM_002944.2	1284	tTa/ta																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48954189	48954191	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GAA	GAA	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	114	421	0	ENST00000267163.4:c.1396_1398delGAA	p.Glu466del	p.E466del	ENST00000267163	NM_000321.2	464	GAA/-																																													NEWRECORD																																		
IDH1	3417	MSKCC	GRCh37	2	209106756	209106756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	87	706	0	ENST00000345146.2:c.812del	p.Asn271ThrfsTer20	p.N271Tfs*20	ENST00000345146	NM_005896.2	271	aAc/ac																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108114733	108114734	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	54	469	0	ENST00000278616.4:c.552_553del	p.Arg184SerfsTer5	p.R184Sfs*5	ENST00000278616	NM_000051.3	184	AGa/a																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15296203	15296204	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	48	559	0	ENST00000263388.2:c.2160_2161del	p.Cys720Ter	p.C720*	ENST00000263388	NM_000435.2	720	tgTGag/tgag																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72993014	72993014	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	232	1056	0	ENST00000268489.5:c.1031del	p.Asn344ThrfsTer8	p.N344Tfs*8	ENST00000268489	NM_006885.3	344	aAc/ac																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5245995	5245996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	96	552	0	ENST00000357368.4:c.779dup	p.Asn261GlnfsTer30	p.N261Qfs*30	ENST00000357368	NM_002850.3	260	ggc/ggGc																																													NEWRECORD																																		
TCF3	6929	MSKCC	GRCh37	19	1611771	1611771	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	73	897	0	ENST00000344749.5:c.1891del	p.Gln631ArgfsTer11	p.Q631Rfs*11	ENST00000344749	NM_001136139.2	631	Cag/ag																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37673703	37673703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	72	431	0	ENST00000447079.4:c.2857G>A	p.Gly953Ser	p.G953S	ENST00000447079	NM_015083.1	953	Ggt/Agt																																													NEWRECORD																																		
H3F3C	440093	MSKCC	GRCh37	12	31944841	31944842	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0009401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	57	465	0	ENST00000340398.3:c.259_260del	p.Ala87SerfsTer9	p.A87Sfs*9	ENST00000340398	NM_001013699.2	87	GCa/a																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37618989	37618990	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	59	219	0	ENST00000447079.4:c.670dup	p.His224ProfsTer6	p.H224Pfs*6	ENST00000447079	NM_015083.1	222	agc/agCc																																													NEWRECORD																																		
RAD54L	8438	MSKCC	GRCh37	1	46740256	46740256	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	84	411	0	ENST00000371975.4:c.1736G>T	p.Gly579Val	p.G579V	ENST00000371975	NM_003579.3	579	gGc/gTc																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227659982	227659982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	110	476	1	ENST00000305123.5:c.3473G>A	p.Gly1158Glu	p.G1158E	ENST00000305123	NM_005544.2	1158	gGa/gAa																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138383960	138383960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	154	479	0	ENST00000289153.2:c.2590C>A	p.Gln864Lys	p.Q864K	ENST00000289153	NM_006219.2	864	Cag/Aag																																													NEWRECORD																																		
FGFR4	2264	MSKCC	GRCh37	5	176523155	176523155	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	100	428	0	ENST00000292408.4:c.1919T>C	p.Ile640Thr	p.I640T	ENST00000292408	NM_213647.1	640	aTt/aCt																																													NEWRECORD																																		
EZH2	2146	MSKCC	GRCh37	7	148508793	148508793	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	104	412	0	ENST00000320356.2:c.1871C>G	p.Ser624Cys	p.S624C	ENST00000320356	NM_004456.4	624	tCt/tGt																																													NEWRECORD																																		
GNAQ	2776	MSKCC	GRCh37	9	80336308	80336308	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	82	410	0	ENST00000286548.4:c.1011C>G	p.Ile337Met	p.I337M	ENST00000286548	NM_002072.3	337	atC/atG																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98229525	98229525	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	142	573	0	ENST00000331920.6:c.2433C>A	p.Asp811Glu	p.D811E	ENST00000331920	NM_000264.3	811	gaC/gaA																																													NEWRECORD																																		
WT1	7490	MSKCC	GRCh37	11	32450080	32450080	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	40	371	0	ENST00000332351.3:c.732C>G	p.Phe244Leu	p.F244L	ENST00000332351	NM_024426.4	244	ttC/ttG																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49420151	49420151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	77	351	0	ENST00000301067.7:c.15598C>T	p.His5200Tyr	p.H5200Y	ENST00000301067	NM_003482.3	5200	Cat/Tat																																													NEWRECORD																																		
SH2B3	10019	MSKCC	GRCh37	12	111885940	111885940	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1948	165	739	0	ENST00000341259.2:c.1562C>G	p.Pro521Arg	p.P521R	ENST00000341259	NM_005475.2	521	cCc/cGc																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59857662	59857662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	189	489	0	ENST00000259008.2:c.1895C>T	p.Thr632Ile	p.T632I	ENST00000259008	NM_032043.2	632	aCt/aTt																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15378353	15378353	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	69	326	1	ENST00000263377.2:c.433G>T	p.Asp145Tyr	p.D145Y	ENST00000263377	NM_058243.2	145	Gac/Tac																																													NEWRECORD																																		
AKT2	208	MSKCC	GRCh37	19	40761117	40761118	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGGCAGCGTATGACAAAGGTGTTGGGTCGCGGCCT			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	120	459	0	ENST00000392038.2:c.199_234dup	p.Arg67_Leu78dup	p.R67_L78dup	ENST00000392038	NM_001626.4	67	-/AGGCCGCGACCCAACACCTTTGTCATACGCTGCCTG																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50918127	50918148	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCCCGGCCCGACGCCCACGA	CCTCCCGGCCCGACGCCCACGA	-			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	294	690	0	ENST00000440232.2:c.2446_2467del	p.Ser816AlafsTer65	p.S816Afs*65	ENST00000440232	NM_002691.3	815	tCCTCCCGGCCCGACGCCCACGAc/tc																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	299	501	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	215	303	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	179	281	0	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	137	264	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	59	174	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	202	390	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	99	136	1	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	192	296	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15271819	15271819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	189	244	0	ENST00000263388.2:c.6620G>A	p.Arg2207Gln	p.R2207Q	ENST00000263388	NM_000435.2	2207	cGg/cAg																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	607	475	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157522260	157522260	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	222	367	0	ENST00000346085.5:c.4532A>G	p.Gln1511Arg	p.Q1511R	ENST00000346085	NM_020732.3	1511	cAg/cGg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112137024	112137024	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	164	273	0	ENST00000257430.4:c.778C>T	p.Gln260Ter	p.Q260*	ENST00000257430	NM_000038.5	260	Cag/Tag																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11190792	11190792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	179	244	1	ENST00000361445.4:c.5407C>T	p.His1803Tyr	p.H1803Y	ENST00000361445	NM_004958.3	1803	Cac/Tac																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65313296	65313296	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	307	567	0	ENST00000342505.4:c.1818G>C	p.Lys606Asn	p.K606N	ENST00000342505	NM_002227.2	606	aaG/aaC																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71026794	71026794	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	161	296	0	ENST00000318789.4:c.1428G>T	p.Gln476His	p.Q476H	ENST00000318789	NM_032682.5	476	caG/caT																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106155467	106155467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	255	375	0	ENST00000380013.4:c.368G>A	p.Arg123His	p.R123H	ENST00000380013	NM_001127208.2	123	cGt/cAt																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106509648	106509648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	236	409	0	ENST00000359195.3:c.1642C>T	p.Pro548Ser	p.P548S	ENST00000359195	NM_002649.2	548	Ccc/Tcc																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116397696	116397696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	174	317	0	ENST00000397752.3:c.1970C>T	p.Pro657Leu	p.P657L	ENST00000397752	NM_000245.2	657	cCt/cTt																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55371828	55371828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			32	30	14	0	ENST00000297316.4:c.518G>A	p.Arg173His	p.R173H	ENST00000297316	NM_022454.3	173	cGc/cAc																																													NEWRECORD																																		
LMO1	4004	MSKCC	GRCh37	11	8248573	8248573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	288	446	3	ENST00000335790.3:c.314G>A	p.Arg105Gln	p.R105Q	ENST00000335790	NM_002315.2	105	cGg/cAg																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95574678	95574678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	178	343	2	ENST00000343455.3:c.2419G>A	p.Ala807Thr	p.A807T	ENST00000343455	NM_177438.2	807	Gcc/Acc																																													NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40353761	40353761	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1077	385	603	0	ENST00000293328.3:c.2359T>C	p.Ser787Pro	p.S787P	ENST00000293328	NM_012448.3	787	Tcg/Ccg																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120460319	120460319	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	145	362	0	ENST00000256646.2:c.5996del	p.Asn1999MetfsTer32	p.N1999Mfs*32	ENST00000256646	NM_024408.3	1999	aAt/at																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112164664	112164664	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	185	158	0	ENST00000257430.4:c.1742delA	p.Lys581ArgfsTer9	p.K581Rfs*9	ENST00000257430	NM_000038.5	580	Aaa/aa																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128851941	128851943	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	179	390	0	ENST00000249373.3:c.2021_2023del	p.Lys674del	p.K674del	ENST00000249373	NM_005631.4	671	cgGAAg/cgg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	181	520	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27097651	27097652	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	242	688	0	ENST00000324856.7:c.3242dup	p.Asn1081LysfsTer24	p.N1081Kfs*24	ENST00000324856	NM_006015.4	1080	-/A																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	104	329	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76849167	76849167	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	100	382	0	ENST00000373344.5:c.6109G>A	p.Val2037Ile	p.V2037I	ENST00000373344	NM_000489.3	2037	Gtc/Atc																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1222986	1222986	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	61	225	0	ENST00000326873.7:c.923G>T	p.Trp308Leu	p.W308L	ENST00000326873	NM_000455.4	308	tGg/tTg																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42791758	42791758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	15	343	0	ENST00000575354.2:c.644G>A	p.Arg215Gln	p.R215Q	ENST00000575354	NM_015125.3	215	cGg/cAg																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162741861	162741861	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	194	356	0	ENST00000367921.3:c.1552G>T	p.Val518Leu	p.V518L	ENST00000367921	NM_006182.2	518	Gtg/Ttg																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225370845	225370845	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	67	237	0	ENST00000264414.4:c.1034T>A	p.Leu345Ter	p.L345*	ENST00000264414	NM_003590.4	345	tTa/tAa																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225422461	225422461	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	119	345	0	ENST00000264414.4:c.179A>T	p.Asn60Ile	p.N60I	ENST00000264414	NM_003590.4	60	aAt/aTt																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131915553	131915553	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	47	186	0	ENST00000265335.6:c.552-1G>T		p.X184_splice	ENST00000265335		184																																														NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32189085	32189085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	64	295	1	ENST00000375023.3:c.469C>T	p.Arg157Trp	p.R157W	ENST00000375023	NM_004557.3	157	Cgg/Tgg																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	94120300	94120300	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	66	498	0	ENST00000369303.4:c.751A>T	p.Ser251Cys	p.S251C	ENST00000369303	NM_004440.3	251	Agt/Tgt																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116435965	116435965	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	101	408	0	ENST00000397752.3:c.3960G>T	p.Trp1320Cys	p.W1320C	ENST00000397752	NM_000245.2	1320	tgG/tgT																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49448151	49448151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	96	399	0	ENST00000301067.7:c.449G>T	p.Trp150Leu	p.W150L	ENST00000301067	NM_003482.3	150	tGg/tTg																																													NEWRECORD																																		
TRAF7	84231	MSKCC	GRCh37	16	2220634	2220634	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	97	377	0	ENST00000326181.6:c.251G>T	p.Arg84Leu	p.R84L	ENST00000326181	NM_032271.2	84	cGc/cTc																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39921598	39921598	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	96	424	0	ENST00000378444.4:c.4222G>T	p.Asp1408Tyr	p.D1408Y	ENST00000378444	NM_001123385.1	1408	Gat/Tat																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39932985	39932985	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	88	415	0	ENST00000378444.4:c.1614G>T	p.Gln538His	p.Q538H	ENST00000378444	NM_001123385.1	538	caG/caT																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68845619	68845619	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	TA			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	135	424	0	ENST00000261769.5:c.865delinsTA	p.Ala289TyrfsTer4	p.A289Yfs*4	ENST00000261769	NM_004360.3	289	Gcg/TAcg																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29450535	29450535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000015-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			196	47	881	1	ENST00000389048.3:c.2819G>A	p.Gly940Asp	p.G940D	ENST00000389048	NM_004304.4	940	gGc/gAc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000015-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			80	56	349	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000015-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			78	45	558	0	ENST00000206249.3:c.1607T>A	p.Leu536His	p.L536H	ENST00000206249	NM_000125.3	536	cTc/cAc																																													NEWRECORD																																		
CDK4	1019	MSKCC	GRCh37	12	58144485	58144485	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000015-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	84	614	0	ENST00000257904.6:c.586G>C	p.Asp196His	p.D196H	ENST00000257904	NM_000075.3	196	Gac/Cac																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0000015-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			131	61	635	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56440637	56440637	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0000015-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			775	79	1148	1	ENST00000407977.2:c.581G>C	p.Trp194Ser	p.W194S	ENST00000407977		194	tGg/tCg																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000015-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			378	75	967	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0006489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	222	483	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0006489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	205	262	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47693918	47693918	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	247	564	0	ENST00000233146.2:c.1632C>G	p.Ile544Met	p.I544M	ENST00000233146	NM_000251.2	544	atC/atG																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117686295	117686295	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	228	408	1	ENST00000368508.3:c.3046C>G	p.Leu1016Val	p.L1016V	ENST00000368508	NM_002944.2	1016	Ctt/Gtt																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89692968	89692968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	227	285	0	ENST00000371953.3:c.452C>A	p.Ala151Asp	p.A151D	ENST00000371953	NM_000314.4	151	gCc/gAc																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68842405	68842405	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	276	560	0	ENST00000261769.5:c.466T>A	p.Trp156Arg	p.W156R	ENST00000261769	NM_004360.3	156	Tgg/Agg																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29588859	29588859	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	235	466	0	ENST00000358273.4:c.4708G>T	p.Glu1570Ter	p.E1570*	ENST00000358273	NM_001042492.2	1570	Gag/Tag																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56160679	56160680	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	285	453	1	ENST00000399503.3:c.954dupA	p.Leu319ThrfsTer7	p.L319Tfs*7	ENST00000399503	NM_005921.1	318	tta/ttAa																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0010431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	111	489	1	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27024008	27024008	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			38	13	50	0	ENST00000324856.7:c.1114C>T	p.Gln372Ter	p.Q372*	ENST00000324856	NM_006015.4	372	Cag/Tag																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67100702	67100702	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0010431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	259	555	0	ENST00000412916.2:c.399+1G>T		p.X133_splice	ENST00000412916		133																																														NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68849586	68849586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	291	580	0	ENST00000261769.5:c.1489del	p.Glu497ArgfsTer25	p.E497Rfs*25	ENST00000261769	NM_004360.3	497	Gag/ag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	266	424	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41765474	41765474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1241	83	409	0	ENST00000301178.4:c.2350C>T	p.Arg784Trp	p.R784W	ENST00000301178	NM_021913.4	784	Cgg/Tgg																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11319367	11319367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1163	151	356	0	ENST00000361445.4:c.100G>A	p.Glu34Lys	p.E34K	ENST00000361445	NM_004958.3	34	Gag/Aag																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156838297	156838297	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1668	332	380	0	ENST00000524377.1:c.575G>T	p.Gly192Val	p.G192V	ENST00000524377	NM_002529.3	192	gGt/gTt																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143191873	143191873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	92	531	1	ENST00000262992.4:c.558G>T	p.Met186Ile	p.M186I	ENST00000262992	NM_001101669.1	186	atG/atT																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295346	1295346	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	408	326	0				ENST00000310581	NM_198253.2																																															NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151873534	151873534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	230	460	0	ENST00000262189.6:c.9004C>T	p.His3002Tyr	p.H3002Y	ENST00000262189	NM_170606.2	3002	Cac/Tac																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8449725	8449725	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	108	368	0	ENST00000356435.5:c.3988G>C	p.Gly1330Arg	p.G1330R	ENST00000356435		1330	Ggt/Cgt																																													NEWRECORD																																		
KLF4	9314	MSKCC	GRCh37	9	110250439	110250439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	420	405	0	ENST00000374672.4:c.236C>T	p.Ala79Val	p.A79V	ENST00000374672	NM_004235.4	79	gCc/gTc																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135787747	135787747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	116	440	1	ENST00000298552.3:c.835C>T	p.His279Tyr	p.H279Y	ENST00000298552	NM_001162426.1	279	Cac/Tac																																													NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28599040	28599040	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	76	440	0	ENST00000241453.7:c.2248G>T	p.Asp750Tyr	p.D750Y	ENST00000241453	NM_004119.2	750	Gat/Tat																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78820353	78820353	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	828	433	0	ENST00000306801.3:c.1293A>C	p.Glu431Asp	p.E431D	ENST00000306801	NM_020761.2	431	gaA/gaC																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10600512	10600512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1094	162	313	0	ENST00000171111.5:c.1343A>G	p.Asp448Gly	p.D448G	ENST00000171111	NM_203500.1	448	gAt/gGt																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9561484	9561484	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1077	114	337	2	ENST00000353224.5:c.298C>A	p.Leu100Ile	p.L100I	ENST00000353224	NM_177990.2	100	Cta/Ata																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151884332	151884365	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATATTCATGGCTTACCAGGGAATTCTTCCTTTAA	ATATTCATGGCTTACCAGGGAATTCTTCCTTTAA	-			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	46	253	0	ENST00000262189.6:c.4990_5008+15del		p.X1664_splice	ENST00000262189	NM_170606.2	1664																																														NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89259395	89259396	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	69	679	0	ENST00000336596.2:c.542dup	p.Leu181PhefsTer47	p.L181Ffs*47	ENST00000336596	NM_005233.5	180	tat/taTt																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10610247	10610247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	135	595	0	ENST00000171111.5:c.463G>T	p.Val155Phe	p.V155F	ENST00000171111	NM_203500.1	155	Gtc/Ttc																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47702217	47702217	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	122	466	0	ENST00000233146.2:c.1813G>T	p.Val605Phe	p.V605F	ENST00000233146	NM_000251.2	605	Gtt/Ttt																																													NEWRECORD																																		
ERCC3	2071	MSKCC	GRCh37	2	128038124	128038124	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	68	464	0	ENST00000285398.2:c.1426A>C	p.Lys476Gln	p.K476Q	ENST00000285398	NM_000122.1	476	Aaa/Caa																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55971149	55971149	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs143197411		P-0007131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	73	275	0	ENST00000263923.4:c.1648G>T	p.Gly550Cys	p.G550C	ENST00000263923	NM_002253.2	550	Ggt/Tgt																																													NEWRECORD																																		
FGFR1	2260	MSKCC	GRCh37	8	38283700	38283700	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	86	588	0	ENST00000425967.3:c.778A>C	p.Thr260Pro	p.T260P	ENST00000425967	NM_001174067.1	260	Acc/Ccc																																													NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90993089	90993089	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	44	195	0	ENST00000265433.3:c.353C>G	p.Ser118Cys	p.S118C	ENST00000265433	NM_002485.4	118	tCt/tGt																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18719924	18719924	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	66	472	0	ENST00000266497.5:c.3821A>C	p.His1274Pro	p.H1274P	ENST00000266497		1274	cAc/cCc																																													NEWRECORD																																		
PTPN11	5781	MSKCC	GRCh37	12	112926834	112926834	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	120	534	0	ENST00000351677.2:c.1454A>G	p.Asp485Gly	p.D485G	ENST00000351677	NM_002834.3	485	gAc/gGc																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11145667	11145668	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCT			P-0007131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	87	489	0	ENST00000344626.4:c.4031_4034dup	p.Trp1346LeufsTer16	p.W1346Lfs*16	ENST00000344626	NM_003072.3	1343	-/CCCT																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578546	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0007131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	63	357	0	ENST00000269305.4:c.383_384del	p.Pro128ArgfsTer20	p.P128Rfs*20	ENST00000269305	NM_001126112.2	128	cCT/c																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89390218	89390222	+	splice_donor_variant,coding_sequence_variant	Splice_Site	ONP	ACCCG	ACCCG	CCCCT			P-0007131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	60	451	0	ENST00000336596.2:c.967_970+1delinsCCCCT		p.X323_splice	ENST00000336596	NM_005233.5	323																																														NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	61	341	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0008400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	41	281	1	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																													NEWRECORD																																		
MYD88	4615	MSKCC	GRCh37	3	38182641	38182641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006825-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	41	490	2	ENST00000396334.3:c.794T>C	p.Leu265Pro	p.L265P	ENST00000396334	NM_002468.4	265	cTg/cCg																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15272207	15272207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006825-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	30	242	0	ENST00000263388.2:c.6232C>T	p.Arg2078Trp	p.R2078W	ENST00000263388	NM_000435.2	2078	Cgg/Tgg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577523	7577524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006825-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	124	553	0	ENST00000269305.4:c.757dup	p.Thr253AsnfsTer11	p.T253Nfs*11	ENST00000269305	NM_001126112.2	253	acc/aAcc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0004810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	95	405	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0004810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	84	341	0	ENST00000269305.4:c.559+1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																														NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32907428	32907428	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	88	436	0	ENST00000380152.3:c.1813A>G	p.Ile605Val	p.I605V	ENST00000380152		605	Ata/Gta																																													NEWRECORD																																		
SUZ12	23512	MSKCC	GRCh37	17	30321582	30321583	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0004810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	66	354	0	ENST00000322652.5:c.1438dup	p.Tyr480LeufsTer7	p.Y480Lfs*7	ENST00000322652	NM_015355.2	479	-/T																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37627772	37627772	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	38	481	1	ENST00000447079.4:c.1687C>T	p.Gln563Ter	p.Q563*	ENST00000447079	NM_015083.1	563	Caa/Taa																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37618549	37618550	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	38	486	0	ENST00000447079.4:c.226dupA	p.Ile76AsnfsTer4	p.I76Nfs*4	ENST00000447079	NM_015083.1	75	-/A																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151876964	151876980	+	frameshift_variant	Frame_Shift_Del	DEL	TAGGGTCCACGCTGATC	TAGGGTCCACGCTGATC	-			P-0005445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	39	487	0	ENST00000262189.6:c.7381_7397delGATCAGCGTGGACCCTA	p.Asp2461SerfsTer3	p.D2461Sfs*3	ENST00000262189	NM_170606.2	2461	GATCAGCGTGGACCCTAt/t																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53223866	53223866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	136	688	1	ENST00000375401.3:c.3493C>T	p.Arg1165Cys	p.R1165C	ENST00000375401	NM_004187.3	1165	Cgt/Tgt																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44921916	44921916	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	90	532	0	ENST00000377967.4:c.1450A>G	p.Arg484Gly	p.R484G	ENST00000377967	NM_021140.2	484	Aga/Gga																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	257	580	0	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138402603	138402603	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	50	422	0	ENST00000289153.2:c.2342C>G	p.Ser781Cys	p.S781C	ENST00000289153	NM_006219.2	781	tCc/tGc																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2974191	2974191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	110	719	2	ENST00000396946.4:c.1414C>G	p.Gln472Glu	p.Q472E	ENST00000396946	NM_032415.4	472	Caa/Gaa																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18435596	18435596	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	65	289	0	ENST00000266497.5:c.581G>C	p.Arg194Thr	p.R194T	ENST00000266497		194	aGg/aCg																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133226412	133226412	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200114024		P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	82	640	0	ENST00000320574.5:c.3646G>A	p.Gly1216Ser	p.G1216S	ENST00000320574	NM_006231.2	1216	Ggc/Agc																																													NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28626758	28626758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	74	422	1	ENST00000241453.7:c.538G>T	p.Asp180Tyr	p.D180Y	ENST00000241453	NM_004119.2	180	Gac/Tac																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32893363	32893363	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	123	353	0	ENST00000380152.3:c.217C>T	p.Gln73Ter	p.Q73*	ENST00000380152		73	Cag/Tag																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89355041	89355041	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	481	1047	0	ENST00000301030.4:c.639C>G	p.Tyr213Ter	p.Y213*	ENST00000301030	NM_001256183.1	213	taC/taG																																													NEWRECORD																																		
PIK3R2	5296	MSKCC	GRCh37	19	18273832	18273832	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	134	660	0	ENST00000222254.8:c.1165T>C	p.Phe389Leu	p.F389L	ENST00000222254	NM_005027.3	389	Ttc/Ctc																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31021452	31021452	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	86	411	0	ENST00000375687.4:c.1451A>G	p.Glu484Gly	p.E484G	ENST00000375687	NM_015338.5	484	gAg/gGg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27100144	27100145	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGACTCGGGGATGTATTCTCCTAG			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	96	507	0	ENST00000324856.7:c.3942_3966dup	p.Tyr1324LeufsTer7	p.Y1324Lfs*7	ENST00000324856	NM_006015.4	1314	cca/cCAGACTCGGGGATGTATTCTCCTAGca																																													NEWRECORD																																		
PIK3R2	5296	MSKCC	GRCh37	19	18266797	18266817	+	inframe_deletion	In_Frame_Del	DEL	GGCCTTGCAGGCGCTGGGCGT	GGCCTTGCAGGCGCTGGGCGT	-			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	85	359	1	ENST00000222254.8:c.112_132del	p.Leu38_Ala44del	p.L38_A44del	ENST00000222254	NM_005027.3	36	gcGGCCTTGCAGGCGCTGGGCGTg/gcg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023574	27023580	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCCTA	CGGCCTA	-			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	91	654	0	ENST00000324856.7:c.682_688del	p.Ala228ArgfsTer2	p.A228Rfs*2	ENST00000324856	NM_006015.4	227	cCGGCCTAc/cc																																													NEWRECORD																																		
SRC	6714	MSKCC	GRCh37	20	36030928	36030965	+	frameshift_variant	Frame_Shift_Del	DEL	TGCAAAGTGGCGGACTTTGGGCTGGCTCGGCTCATTGA	TGCAAAGTGGCGGACTTTGGGCTGGCTCGGCTCATTGA	GGG			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	41	584	0	ENST00000358208.4:c.1207_1244delinsGGG	p.Cys403GlyfsTer4	p.C403Gfs*4	ENST00000358208		403	TGCAAAGTGGCGGACTTTGGGCTGGCTCGGCTCATTGAa/GGGa																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACT			P-0010891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	124	350	0	ENST00000275493.2:c.2310_2311insTAC	p.Asp770_Asn771insTyr	p.D770_N771insY	ENST00000275493	NM_005228.3	770	gac/gACTac																																													NEWRECORD																																		
LATS2	26524	MSKCC	GRCh37	13	21549263	21549263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			896	247	516	0	ENST00000382592.4:c.3013G>A	p.Val1005Ile	p.V1005I	ENST00000382592	NM_014572.2	1005	Gta/Ata																																													NEWRECORD																																		
GNA11	2767	MSKCC	GRCh37	19	3118934	3118934	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	130	330	0	ENST00000078429.4:c.623del	p.Gly208AlafsTer16	p.G208Afs*16	ENST00000078429	NM_002067.2	206	gtG/gt																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			704	73	413	1	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			900	52	372	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			305	122	228	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16024505	16024505	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			896	179	450	1	ENST00000268712.3:c.1713delG	p.Arg572GlufsTer18	p.R572Efs*18	ENST00000268712	NM_006311.3	571	ggG/gg																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			509	96	227	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56177584	56177584	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368201444		P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			860	244	440	1	ENST00000399503.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000399503	NM_005921.1	853	Cgt/Tgt																																													NEWRECORD																																		
FGFR2	2263	MSKCC	GRCh37	10	123310820	123310820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			958	215	506	0	ENST00000358487.5:c.608G>A	p.Arg203His	p.R203H	ENST00000358487	NM_000141.4	203	cGc/cAc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			791	227	458	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15272375	15272375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	149	357	2	ENST00000263388.2:c.6064C>T	p.Arg2022Cys	p.R2022C	ENST00000263388	NM_000435.2	2022	Cgc/Tgc																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			369	80	217	1	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	261	340	0	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																													NEWRECORD																																		
NF2	4771	MSKCC	GRCh37	22	30032794	30032794	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121434259		P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			815	192	394	0	ENST00000338641.4:c.169C>T	p.Arg57Ter	p.R57*	ENST00000338641	NM_000268.3	57	Cga/Tga																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67457303	67457303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			716	178	375	3	ENST00000327367.4:c.277C>T	p.Arg93Ter	p.R93*	ENST00000327367	NM_005902.3	93	Cga/Tga																																													NEWRECORD																																		
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			744	109	332	1	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157099312	157099312	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			587	131	247	0	ENST00000346085.5:c.249G>C	p.Gln83His	p.Q83H	ENST00000346085	NM_020732.3	83	caG/caC																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16255617	16255617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			786	51	318	0	ENST00000375759.3:c.2882G>A	p.Arg961Lys	p.R961K	ENST00000375759	NM_015001.2	961	aGg/aAg																																													NEWRECORD																																		
MPL	4352	MSKCC	GRCh37	1	43814674	43814674	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			469	94	252	0	ENST00000372470.3:c.1468+1G>A		p.X490_splice	ENST00000372470	NM_005373.2	490																																														NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65312353	65312353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			757	193	377	0	ENST00000342505.4:c.1966G>A	p.Val656Ile	p.V656I	ENST00000342505	NM_002227.2	656	Gtc/Atc																																													NEWRECORD																																		
MCL1	4170	MSKCC	GRCh37	1	150551491	150551491	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1157	64	401	1	ENST00000369026.2:c.516C>G	p.Asp172Glu	p.D172E	ENST00000369026	NM_021960.4	172	gaC/gaG																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156843653	156843653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			831	181	435	0	ENST00000524377.1:c.1079C>T	p.Thr360Met	p.T360M	ENST00000524377	NM_002529.3	360	aCg/aTg																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25976484	25976484	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			972	64	487	0	ENST00000435504.4:c.1061T>C	p.Val354Ala	p.V354A	ENST00000435504		354	gTg/gCg																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030613	48030613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			905	203	466	0	ENST00000234420.5:c.3227G>A	p.Arg1076His	p.R1076H	ENST00000234420	NM_000179.2	1076	cGc/cAc																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198274611	198274611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			911	115	449	0	ENST00000335508.6:c.787G>A	p.Ala263Thr	p.A263T	ENST00000335508	NM_012433.2	263	Gcg/Acg																																													NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242800930	242800930	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			677	113	351	0	ENST00000334409.5:c.61C>G	p.Pro21Ala	p.P21A	ENST00000334409	NM_005018.2	21	Cca/Gca																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30713660	30713660	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148665451		P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			540	142	254	0	ENST00000359013.4:c.1060G>A	p.Ala354Thr	p.A354T	ENST00000359013	NM_001024847.2	354	Gcc/Acc																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89390222	89390222	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs754818412		P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			651	154	364	0	ENST00000336596.2:c.970+1G>A		p.X324_splice	ENST00000336596	NM_005233.5	324																																														NEWRECORD																																		
GATA2	2624	MSKCC	GRCh37	3	128204639	128204639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			614	174	368	0	ENST00000341105.2:c.802G>A	p.Gly268Arg	p.G268R	ENST00000341105	NM_032638.4	268	Gga/Aga																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134825440	134825440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			725	63	412	0	ENST00000398015.3:c.956G>A	p.Cys319Tyr	p.C319Y	ENST00000398015	NM_004441.4	319	tGc/tAc																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138374301	138374301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			813	239	480	0	ENST00000289153.2:c.3143C>T	p.Ala1048Val	p.A1048V	ENST00000289153	NM_006219.2	1048	gCg/gTg																																													NEWRECORD																																		
FOXL2	668	MSKCC	GRCh37	3	138665101	138665101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			229	85	128	0	ENST00000330315.3:c.464C>T	p.Pro155Leu	p.P155L	ENST00000330315	NM_023067.3	155	cCg/cTg																																													NEWRECORD																																		
SOX2	6657	MSKCC	GRCh37	3	181430183	181430183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	90	129	1	ENST00000325404.1:c.35C>T	p.Pro12Leu	p.P12L	ENST00000325404	NM_003106.3	12	cCg/cTg																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55138645	55138645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			613	133	304	0	ENST00000257290.5:c.1322C>T	p.Pro441Leu	p.P441L	ENST00000257290	NM_006206.4	441	cCg/cTg																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1264670	1264670	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			676	161	391	0	ENST00000310581.5:c.2692G>A	p.Val898Met	p.V898M	ENST00000310581	NM_198253.2	898	Gtg/Atg																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1272305	1272305	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			551	81	294	0	ENST00000310581.5:c.2377G>T	p.Glu793Ter	p.E793*	ENST00000310581	NM_198253.2	793	Gag/Tag																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1294613	1294613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			240	63	111	0	ENST00000310581.5:c.388G>A	p.Ala130Thr	p.A130T	ENST00000310581	NM_198253.2	130	Gca/Aca																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112157594	112157594	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			628	145	389	2	ENST00000257430.4:c.1314G>A	p.Met438Ile	p.M438I	ENST00000257430	NM_000038.5	438	atG/atA																																													NEWRECORD																																		
CSF1R	1436	MSKCC	GRCh37	5	149433745	149433745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			619	303	305	0	ENST00000286301.3:c.2806G>A	p.Gly936Ser	p.G936S	ENST00000286301	NM_005211.3	936	Ggc/Agc																																													NEWRECORD																																		
FGFR4	2264	MSKCC	GRCh37	5	176517474	176517474	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			552	70	310	0	ENST00000292408.4:c.175C>G	p.Arg59Gly	p.R59G	ENST00000292408	NM_213647.1	59	Cgg/Ggg																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152419869	152419869	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			508	56	254	0	ENST00000206249.3:c.1556A>G	p.Asn519Ser	p.N519S	ENST00000206249	NM_000125.3	519	aAc/aGc																																													NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50444275	50444275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			543	120	217	0	ENST00000331340.3:c.205C>T	p.Arg69Cys	p.R69C	ENST00000331340	NM_006060.4	69	Cgt/Tgt																																													NEWRECORD																																		
EZH2	2146	MSKCC	GRCh37	7	148512051	148512051	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			774	186	299	0	ENST00000320356.2:c.1627A>T	p.Ile543Leu	p.I543L	ENST00000320356	NM_004456.4	543	Ata/Tta																																													NEWRECORD																																		
FGFR1	2260	MSKCC	GRCh37	8	38287262	38287262	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			746	113	450	0	ENST00000425967.3:c.395A>G	p.Tyr132Cys	p.Y132C	ENST00000425967	NM_001174067.1	132	tAt/tGt																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55371987	55371987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	109	224	0	ENST00000297316.4:c.677C>T	p.Pro226Leu	p.P226L	ENST00000297316	NM_022454.3	226	cCg/cTg																																													NEWRECORD																																		
GNAQ	2776	MSKCC	GRCh37	9	80343580	80343580	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			602	128	239	0	ENST00000286548.4:c.739C>T	p.Arg247Ter	p.R247*	ENST00000286548	NM_002072.3	247	Cga/Tga																																													NEWRECORD																																		
TGFBR1	7046	MSKCC	GRCh37	9	101908844	101908844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			974	181	446	0	ENST00000374994.4:c.1208C>T	p.Ala403Val	p.A403V	ENST00000374994	NM_004612.2	403	gCa/gTa																																													NEWRECORD																																		
KLF4	9314	MSKCC	GRCh37	9	110249779	110249779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			586	113	294	0	ENST00000374672.4:c.896G>A	p.Arg299Gln	p.R299Q	ENST00000374672	NM_004235.4	299	cGg/cAg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139390617	139390617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			893	167	401	0	ENST00000277541.6:c.7574C>T	p.Pro2525Leu	p.P2525L	ENST00000277541	NM_017617.3	2525	cCg/cTg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139399172	139399172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			499	96	249	0	ENST00000277541.6:c.4971C>A	p.Ser1657Arg	p.S1657R	ENST00000277541	NM_017617.3	1657	agC/agA																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63851104	63851104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148232588		P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			687	39	304	0	ENST00000279873.7:c.1882G>A	p.Val628Met	p.V628M	ENST00000279873	NM_032199.2	628	Gtg/Atg																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64575124	64575124	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			611	44	264	0	ENST00000337652.1:c.698T>C	p.Met233Thr	p.M233T	ENST00000337652	NM_130803.2	233	aTg/aCg																																													NEWRECORD																																		
CCND1	595	MSKCC	GRCh37	11	69466037	69466037	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			445	136	290	0	ENST00000227507.2:c.875A>G	p.Asp292Gly	p.D292G	ENST00000227507	NM_053056.2	292	gAc/gGc																																													NEWRECORD																																		
FGF19	9965	MSKCC	GRCh37	11	69518578	69518578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	68	202	0	ENST00000294312.3:c.67C>T	p.Arg23Cys	p.R23C	ENST00000294312	NM_005117.2	23	Cgc/Tgc																																													NEWRECORD																																		
PAK1	5058	MSKCC	GRCh37	11	77069992	77069992	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			873	105	394	0	ENST00000356341.3:c.548A>C	p.Asp183Ala	p.D183A	ENST00000356341	NM_002576.4	183	gAt/gCt																																													NEWRECORD																																		
EED	8726	MSKCC	GRCh37	11	85988076	85988076	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			709	64	368	0	ENST00000263360.6:c.1021G>T	p.Asp341Tyr	p.D341Y	ENST00000263360	NM_003797.3	341	Gat/Tat																																													NEWRECORD																																		
IGF1	3479	MSKCC	GRCh37	12	102813435	102813435	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			622	134	340	0	ENST00000307046.8:c.254G>T	p.Arg85Met	p.R85M	ENST00000307046	NM_001111285.1	85	aGg/aTg																																													NEWRECORD																																		
PTPN11	5781	MSKCC	GRCh37	12	112924336	112924336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			581	360	363	0	ENST00000351677.2:c.1282G>A	p.Val428Met	p.V428M	ENST00000351677	NM_002834.3	428	Gtg/Atg																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115110101	115110101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	71	203	0	ENST00000257566.3:c.1777G>A	p.Ala593Thr	p.A593T	ENST00000257566	NM_016569.3	593	Gcc/Acc																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115112554	115112554	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			653	146	391	0	ENST00000257566.3:c.1186T>C	p.Ser396Pro	p.S396P	ENST00000257566	NM_016569.3	396	Tcc/Ccc																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133249286	133249286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			763	158	381	0	ENST00000320574.5:c.1613C>T	p.Thr538Ile	p.T538I	ENST00000320574	NM_006231.2	538	aCc/aTc																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110436951	110436951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			85	33	61	0	ENST00000375856.3:c.1450G>A	p.Gly484Ser	p.G484S	ENST00000375856	NM_003749.2	484	Ggc/Agc																																													NEWRECORD																																		
NKX2-1	7080	MSKCC	GRCh37	14	36986991	36986991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			497	168	316	0	ENST00000354822.5:c.698C>T	p.Thr233Met	p.T233M	ENST00000354822	NM_001079668.2	233	aCg/aTg																																													NEWRECORD																																		
CD276	80381	MSKCC	GRCh37	15	74000774	74000774	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			858	210	429	1	ENST00000318443.5:c.1464C>A	p.Cys488Ter	p.C488*	ENST00000318443	NM_001024736.1	488	tgC/tgA																																													NEWRECORD																																		
IDH2	3418	MSKCC	GRCh37	15	90630791	90630791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			410	111	240	0	ENST00000330062.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000330062	NM_002168.2	232	gCg/gTg																																													NEWRECORD																																		
IDH2	3418	MSKCC	GRCh37	15	90633818	90633818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			767	168	345	0	ENST00000330062.3:c.266G>A	p.Arg89His	p.R89H	ENST00000330062	NM_002168.2	89	cGt/cAt																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99465538	99465538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			943	53	413	0	ENST00000268035.6:c.2363C>T	p.Thr788Ile	p.T788I	ENST00000268035	NM_000875.3	788	aCt/aTt																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3778194	3778194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			412	117	290	1	ENST00000262367.5:c.6854C>A	p.Pro2285His	p.P2285H	ENST00000262367	NM_004380.2	2285	cCc/cAc																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	10274159	10274159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			565	82	323	0	ENST00000330684.3:c.110C>T	p.Ala37Val	p.A37V	ENST00000330684	NM_001134407.1	37	gCg/gTg																																													NEWRECORD																																		
PIK3C3	5289	MSKCC	GRCh37	18	39644793	39644793	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			659	151	380	0	ENST00000262039.4:c.2522A>G	p.Lys841Arg	p.K841R	ENST00000262039	NM_002647.2	841	aAg/aGg																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11098534	11098534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			423	119	305	2	ENST00000344626.4:c.1052G>A	p.Arg351His	p.R351H	ENST00000344626	NM_003072.3	351	cGc/cAc																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11101932	11101932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			537	103	327	2	ENST00000344626.4:c.1352G>A	p.Arg451His	p.R451H	ENST00000344626	NM_003072.3	451	cGc/cAc																																													NEWRECORD																																		
PIK3R2	5296	MSKCC	GRCh37	19	18273240	18273240	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			720	193	361	1	ENST00000222254.8:c.1033C>T	p.Arg345Trp	p.R345W	ENST00000222254	NM_005027.3	345	Cgg/Tgg																																													NEWRECORD																																		
AKT2	208	MSKCC	GRCh37	19	40742171	40742171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			672	175	416	3	ENST00000392038.2:c.953C>T	p.Ala318Val	p.A318V	ENST00000392038	NM_001626.4	318	gCg/gTg																																													NEWRECORD																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52705276	52705276	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			844	70	361	0	ENST00000322088.6:c.158C>A	p.Pro53His	p.P53H	ENST00000322088	NM_014225.5	53	cCt/cAt																																													NEWRECORD																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52714711	52714711	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			596	136	342	0	ENST00000322088.6:c.469C>T	p.Arg157Ter	p.R157*	ENST00000322088	NM_014225.5	157	Cga/Tga																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57485397	57485397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			728	98	247	0	ENST00000371085.3:c.979G>A	p.Glu327Lys	p.E327K	ENST00000371085	NM_000516.4	327	Gag/Aag																																													NEWRECORD																																		
ICOSLG	23308	MSKCC	GRCh37	21	45656914	45656914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			752	148	438	0	ENST00000407780.3:c.242G>A	p.Arg81Gln	p.R81Q	ENST00000407780	NM_001283052.1	81	cGg/cAg																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52610608	52610609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			732	143	491	0	ENST00000394830.3:c.3564dup	p.Glu1189ArgfsTer6	p.E1189Rfs*6	ENST00000394830	NM_018313.4	1188	-/A																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106193762	106193762	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			514	105	283	0	ENST00000380013.4:c.4227del	p.Lys1409AsnfsTer39	p.K1409Nfs*39	ENST00000380013	NM_001127208.2	1408	ggA/gg																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143130120	143130120	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			717	181	443	1	ENST00000262992.4:c.896delA	p.Asn299MetfsTer10	p.N299Mfs*10	ENST00000262992	NM_001101669.1	299	aAt/at																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56177011	56177014	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			642	98	361	0	ENST00000399503.3:c.2286_2289delTAGA	p.Arg763CysfsTer35	p.R763Cfs*35	ENST00000399503	NM_005921.1	761	ATAGat/at																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86659182	86659182	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			488	135	317	0	ENST00000274376.6:c.1475del	p.Asn492IlefsTer6	p.N492Ifs*6	ENST00000274376	NM_002890.2	491	Aaa/aa																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			648	130	346	0	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112177091	112177091	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			853	186	487	0	ENST00000257430.4:c.5803del	p.Gln1935SerfsTer35	p.Q1935Sfs*35	ENST00000257430	NM_000038.5	1934	Ccc/cc																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149499679	149499679	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			743	59	295	0	ENST00000261799.4:c.2594del	p.Leu865CysfsTer3	p.L865Cfs*3	ENST00000261799	NM_002609.3	865	tTg/tg																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180048756	180048756	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			571	99	319	0	ENST00000261937.6:c.1806del	p.His602GlnfsTer37	p.H602Qfs*37	ENST00000261937	NM_182925.4	602	caC/ca																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81350138	81350139	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			754	164	451	0	ENST00000222390.5:c.1193dup	p.Asn398LysfsTer37	p.N398Kfs*37	ENST00000222390	NM_000601.4	398	aat/aaAt																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98232173	98232175	+	inframe_deletion	In_Frame_Del	DEL	AGC	AGC	-			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			802	127	316	0	ENST00000331920.6:c.1767_1769del	p.Leu590del	p.L590del	ENST00000331920	NM_000264.3	589	ctGCTc/ctc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8100425	8100425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			784	149	457	2	ENST00000346208.3:c.404delC	p.Pro135ArgfsTer60	p.P135Rfs*60	ENST00000346208		133	taC/ta																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89692825	89692826	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	18	134	0	ENST00000371953.3:c.309_310insA	p.Phe104IlefsTer3	p.F104Ifs*3	ENST00000371953	NM_000314.4	103	-/A																																													NEWRECORD																																		
MYOD1	4654	MSKCC	GRCh37	11	17742463	17742463	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			621	159	367	0	ENST00000250003.3:c.650delC	p.Pro217ArgfsTer33	p.P217Rfs*33	ENST00000250003	NM_002478.4	215	ggC/gg																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	10274083	10274083	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			667	168	405	0	ENST00000330684.3:c.186del	p.Leu63CysfsTer5	p.L63Cfs*5	ENST00000330684	NM_001134407.1	62	ggG/gg																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29579996	29579996	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			577	115	366	0	ENST00000358273.4:c.4157delA	p.Lys1386ArgfsTer20	p.K1386Rfs*20	ENST00000358273	NM_001042492.2	1384	gAa/ga																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48573505	48573506	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			764	144	339	0	ENST00000342988.3:c.94_95delAG	p.Ser32Ter	p.S32*	ENST00000342988	NM_005359.5	30	gGA/g																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			153	29	62	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10262117	10262119	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			884	154	496	0	ENST00000340748.4:c.2172_2174del	p.Lys725del	p.K725del	ENST00000340748		724	aaGAAa/aaa																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11096027	11096027	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			664	35	363	1	ENST00000344626.4:c.305del	p.Gly102AlafsTer201	p.G102Afs*201	ENST00000344626	NM_003072.3	101	Ggg/gg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0010095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	152	591	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178927977	178927982	+	inframe_deletion	In_Frame_Del	DEL	CACTGT	CACTGT	-			P-0010095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	37	241	0	ENST00000263967.3:c.1256_1261del	p.His419_Cys420del	p.H419_C420del	ENST00000263967	NM_006218.2	419	CACTGT/-																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42035061	42035061	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	101	860	0	ENST00000219905.7:c.4903A>G	p.Thr1635Ala	p.T1635A	ENST00000219905	NM_001164273.1	1635	Aca/Gca																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99478632	99478632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	50	497	0	ENST00000268035.6:c.3274C>T	p.Arg1092Trp	p.R1092W	ENST00000268035	NM_000875.3	1092	Cgg/Tgg																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67063684	67063684	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	204	406	0	ENST00000412916.2:c.133C>T	p.Gln45Ter	p.Q45*	ENST00000412916		45	Cag/Tag																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111471	8111472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTCAGACCACCACAACCACACTCTGGAGGAGGAATGCCAATGG			P-0010095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	105	420	0	ENST00000346208.3:c.958_1001dup	p.Asp335ValfsTer35	p.D335Vfs*35	ENST00000346208		319	-/TGTCAGACCACCACAACCACACTCTGGAGGAGGAATGCCAATGG																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38963090	38963090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001314-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1102	171	489	2	ENST00000357387.3:c.1454G>A	p.Arg485Gln	p.R485Q	ENST00000357387	NM_152756.3	485	cGa/cAa																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38950625	38950626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001314-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1404	253	611	0	ENST00000357387.3:c.3324dup	p.His1109ThrfsTer3	p.H1109Tfs*3	ENST00000357387	NM_152756.3	1108	-/A																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013319-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	83	492	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013319-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	39	634	1	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70117962	70117963	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0013319-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	24	245	0	ENST00000245479.2:c.431+1dup		p.R144fs	ENST00000245479	NM_000346.3	144	aga/aGga																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49427501	49427502	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0013319-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	48	762	0	ENST00000301067.7:c.10986_10987delinsTT	p.Met3662_Ala3663delinsIleSer	p.M3662_A3663delinsIS	ENST00000301067	NM_003482.3	3662	atGGca/atTTca																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66766350	66766351	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGTGGTGGC			P-0000560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			44	50	41	0	ENST00000374690.3:c.1365_1373dupTGGTGGCGG	p.Gly471_Gly473dup	p.G471_G473dup	ENST00000374690	NM_000044.3	471	-/GGTGGTGGC																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180048631	180048631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	50	155	0	ENST00000261937.6:c.1931C>T	p.Ala644Val	p.A644V	ENST00000261937	NM_182925.4	644	gCg/gTg																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32183091	32183091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	59	305	0	ENST00000375023.3:c.1933G>A	p.Asp645Asn	p.D645N	ENST00000375023	NM_004557.3	645	Gac/Aac																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0011309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	59	325	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149502690	149502690	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	38	408	0	ENST00000261799.4:c.2098T>G	p.Phe700Val	p.F700V	ENST00000261799	NM_002609.3	700	Ttc/Gtc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577118	7577119	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	84	459	1	ENST00000269305.4:c.819dup	p.Val274CysfsTer32	p.V274Cfs*32	ENST00000269305	NM_001126112.2	273	-/T																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931589		P-0003541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	283	408	2	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30673752	30673752	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	186	270	0	ENST00000376406.3:c.3208C>G	p.Leu1070Val	p.L1070V	ENST00000376406	NM_014641.2	1070	Ctt/Gtt																																													NEWRECORD																																		
BMPR1A	657	MSKCC	GRCh37	10	88678980	88678981	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	ATA			P-0003541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	189	145	0	ENST00000372037.3:c.920_921insATA	p.Leu307_Ile308insTer	p.L307_I308ins*	ENST00000372037	NM_004329.2	307	ttg/ttATAg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	97	413	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67063312	67063313	+	frameshift_variant,start_lost	Frame_Shift_Ins	INS	-	-	G			P-0014929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	69	314	0	ENST00000412916.2:c.3dup	p.Pro2AlafsTer18	p.P2Afs*18	ENST00000412916		1	atg/atGg																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68847342	68847342	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	200	614	1	ENST00000261769.5:c.1264C>T	p.Gln422Ter	p.Q422*	ENST00000261769	NM_004360.3	422	Caa/Taa																																													NEWRECORD																																		
PREX2	80243	MSKCC	GRCh37	8	68965472	68965472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200682883		P-0014929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	377	617	0	ENST00000288368.4:c.1084C>T	p.Arg362Trp	p.R362W	ENST00000288368	NM_024870.2	362	Cgg/Tgg																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49928735	49928735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1147	71	628	0	ENST00000296474.3:c.3539C>T	p.Pro1180Leu	p.P1180L	ENST00000296474	NM_002447.2	1180	cCc/cTc																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89711904	89711904	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0006527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	65	279	0	ENST00000371953.3:c.522T>G	p.Tyr174Ter	p.Y174*	ENST00000371953	NM_000314.4	174	taT/taG																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115888	8115889	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	43	425	0	ENST00000346208.3:c.1236dupC	p.Ser413GlnfsTer94	p.S413Qfs*94	ENST00000346208		412	tcc/tCcc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0007391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	433	463	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	105	482	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	148	208	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0007391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	242	502	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42795006	42795006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	257	368	0	ENST00000575354.2:c.2086C>T	p.Arg696Trp	p.R696W	ENST00000575354	NM_015125.3	696	Cgg/Tgg																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118377298	118377298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1230	288	501	0	ENST00000534358.1:c.10691G>A	p.Arg3564Gln	p.R3564Q	ENST00000534358	NM_005933.3	3564	cGg/cAg																																													NEWRECORD																																		
SH2D1A	4068	MSKCC	GRCh37	X	123504036	123504036	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	29	243	0	ENST00000371139.4:c.212G>T	p.Gly71Val	p.G71V	ENST00000371139	NM_001114937.2	71	gGg/gTg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175612	112175613	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CACCT			P-0007391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1407	356	589	0	ENST00000257430.4:c.4323_4327dup	p.Pro1443HisfsTer32	p.P1443Hfs*32	ENST00000257430	NM_000038.5	1441	cca/cCACCTca																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0013617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	117	411	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0013617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	162	606	0	ENST00000346208.3:c.1002_1003dup	p.Asp335GlyfsTer21	p.D335Gfs*21	ENST00000346208		333	-/GG																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	177	193	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
PARP1	142	MSKCC	GRCh37	1	226549740	226549740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	268	243	0	ENST00000366794.5:c.2893G>A	p.Asp965Asn	p.D965N	ENST00000366794	NM_001618.3	965	Gat/Aat																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47158207	47158207	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	137	227	0	ENST00000409792.3:c.4492C>T	p.Gln1498Ter	p.Q1498*	ENST00000409792	NM_014159.6	1498	Cag/Tag																																													NEWRECORD																																		
MAP2K1	5604	MSKCC	GRCh37	15	66729156	66729156	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	242	317	0	ENST00000307102.5:c.364A>G	p.Asn122Asp	p.N122D	ENST00000307102	NM_002755.3	122	Aac/Gac																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578200	7578222	+	frameshift_variant	Frame_Shift_Del	DEL	CCACACTATGTCGAAAAGTGTTT	CCACACTATGTCGAAAAGTGTTT	-			P-0006289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	248	325	0	ENST00000269305.4:c.627_649del	p.Arg209SerfsTer5	p.R209Sfs*5	ENST00000269305	NM_001126112.2	209	agAAACACTTTTCGACATAGTGTGGtg/agtg																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48575131	48575132	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0006289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	235	295	1	ENST00000342988.3:c.325_326del	p.Leu109LysfsTer4	p.L109Kfs*4	ENST00000342988	NM_005359.5	109	CTa/a																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47164156	47164157	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0006289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	103	183	0	ENST00000409792.3:c.1968_1969dup	p.Lys657IlefsTer3	p.K657Ifs*3	ENST00000409792	NM_014159.6	657	aaa/aTAaa																																													NEWRECORD																																		
PIK3C3	5289	MSKCC	GRCh37	18	39593533	39593533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	31	247	0	ENST00000262039.4:c.1298C>T	p.Ser433Phe	p.S433F	ENST00000262039	NM_002647.2	433	tCt/tTt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	81	382	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212248528	212248528	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	126	661	2	ENST00000342788.4:c.3739C>A	p.Leu1247Met	p.L1247M	ENST00000342788	NM_005235.2	1247	Ctg/Atg																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86669981	86669981	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0008919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	49	266	0	ENST00000274376.6:c.1778T>G	p.Val593Gly	p.V593G	ENST00000274376	NM_002890.2	593	gTc/gGc																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118345028	118345028	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0008919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	61	211	0	ENST00000534358.1:c.3154C>T	p.Gln1052Ter	p.Q1052*	ENST00000534358	NM_005933.3	1052	Cag/Tag																																													NEWRECORD																																		
LATS2	26524	MSKCC	GRCh37	13	21563321	21563321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	77	615	0	ENST00000382592.4:c.598G>A	p.Gly200Ser	p.G200S	ENST00000382592	NM_014572.2	200	Ggc/Agc																																													NEWRECORD																																		
TSHR	7253	MSKCC	GRCh37	14	81528521	81528521	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	98	516	0	ENST00000298171.2:c.200T>A	p.Ile67Asn	p.I67N	ENST00000298171	NM_000369.2	67	aTt/aAt																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81954830	81954830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1042	137	708	0	ENST00000359376.3:c.2263G>A	p.Val755Ile	p.V755I	ENST00000359376	NM_002661.3	755	Gtc/Atc																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48593539	48593539	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	71	283	0	ENST00000342988.3:c.1290C>A	p.Tyr430Ter	p.Y430*	ENST00000342988	NM_005359.5	430	taC/taA																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46125076	46125076	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AG			P-0008919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	85	417	1	ENST00000334344.6:c.263delinsAG	p.Ala88GlufsTer23	p.A88Efs*23	ENST00000334344	NM_152641.2	88	gCt/gAGt																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002975-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			378	98	552	2	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64574690	64574690	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0002975-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	50	439	0	ENST00000337652.1:c.800del	p.Lys267SerfsTer19	p.K267Sfs*19	ENST00000337652	NM_130803.2	267	aAg/ag																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	71	104	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	99	183	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
MYCL1	4610	MSKCC	GRCh37	1	40363243	40363243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	131	212	0	ENST00000397332.2:c.986C>T	p.Ser329Leu	p.S329L	ENST00000397332	NM_001033082.2	329	tCg/tTg																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25457261	25457261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	86	169	0	ENST00000264709.3:c.2626G>A	p.Asp876Asn	p.D876N	ENST00000264709	NM_175629.2	876	Gac/Aac																																													NEWRECORD																																		
REL	5966	MSKCC	GRCh37	2	61149506	61149506	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	165	251	0	ENST00000295025.8:c.1696G>C	p.Asp566His	p.D566H	ENST00000295025	NM_002908.2	566	Gac/Cac																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198288537	198288537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	162	325	0	ENST00000335508.6:c.190G>A	p.Glu64Lys	p.E64K	ENST00000335508	NM_012433.2	64	Gaa/Aaa																																													NEWRECORD																																		
BCL6	604	MSKCC	GRCh37	3	187446247	187446247	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	81	175	0	ENST00000232014.4:c.1441C>T	p.Gln481Ter	p.Q481*	ENST00000232014	NM_001130845.1	481	Cag/Tag																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55979645	55979645	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	95	217	0	ENST00000263923.4:c.802C>T	p.Gln268Ter	p.Q268*	ENST00000263923	NM_002253.2	268	Cag/Tag																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32191635	32191635	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	140	497	0	ENST00000375023.3:c.71G>C	p.Arg24Thr	p.R24T	ENST00000375023	NM_004557.3	24	aGa/aCa																																													NEWRECORD																																		
SYK	6850	MSKCC	GRCh37	9	93641045	93641045	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	46	101	0	ENST00000375746.1:c.1392-1G>C		p.X464_splice	ENST00000375746	NM_001174167.1	464																																														NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139412639	139412639	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1037236860		P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	84	210	0	ENST00000277541.6:c.1205C>T	p.Ser402Leu	p.S402L	ENST00000277541	NM_017617.3	402	tCg/tTg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108117753	108117753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	102	245	0	ENST00000278616.4:c.964G>A	p.Glu322Lys	p.E322K	ENST00000278616	NM_000051.3	322	Gag/Aag																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18443910	18443910	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	103	262	0	ENST00000266497.5:c.883G>T	p.Asp295Tyr	p.D295Y	ENST00000266497		295	Gat/Tat																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48934194	48934194	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	115	190	0	ENST00000267163.4:c.649C>T	p.Gln217Ter	p.Q217*	ENST00000267163	NM_000321.2	217	Cag/Tag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs483352697		P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	158	380	0	ENST00000269305.4:c.587G>A	p.Arg196Gln	p.R196Q	ENST00000269305	NM_001126112.2	196	cGa/cAa																																													NEWRECORD																																		
SPOP	8405	MSKCC	GRCh37	17	47688735	47688735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	193	337	0	ENST00000347630.2:c.565G>A	p.Glu189Lys	p.E189K	ENST00000347630	NM_001007230.1	189	Gag/Aag																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40980877	40980877	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	61	160	0	ENST00000373198.4:c.1609A>G	p.Ser537Gly	p.S537G	ENST00000373198	NM_133170.3	537	Agc/Ggc																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57466809	57466809	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs200163406		P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	83	230	0	ENST00000371085.3:c.28G>C	p.Glu10Gln	p.E10Q	ENST00000371085	NM_000516.4	10	Gag/Cag																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68862100	68862103	+	frameshift_variant	Frame_Shift_Del	DEL	TTTC	TTTC	-			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	151	269	0	ENST00000261769.5:c.2190_2193delTCTT	p.Leu731GlyfsTer38	p.L731Gfs*38	ENST00000261769	NM_004360.3	730	TTTCtt/tt																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56183246	56183247	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	236	177	0	ENST00000399503.3:c.4158dup	p.Ala1387CysfsTer33	p.A1387Cfs*33	ENST00000399503	NM_005921.1	1386	att/aTtt																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56178029	56178030	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	125	228	0	ENST00000399503.3:c.3005_3006del	p.Ser1002Ter	p.S1002*	ENST00000399503	NM_005921.1	1001	gTC/g																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061312	38061312	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	204	694	0	ENST00000250448.2:c.677A>G	p.Asp226Gly	p.D226G	ENST00000250448	NM_004496.3	226	gAc/gGc																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435408	56435408	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	136	520	0	ENST00000407977.2:c.1729C>T	p.Gln577Ter	p.Q577*	ENST00000407977		577	Cag/Tag																																													NEWRECORD																																		
GPS2	2874	MSKCC	GRCh37	17	7217861	7217862	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0010638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1119	235	954	0	ENST00000380728.2:c.149_150del	p.Arg50LysfsTer46	p.R50Kfs*46	ENST00000380728		50	aGA/a																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	12043192	12043193	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0010638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	174	588	0	ENST00000353533.5:c.1079_1080del	p.Glu360AlafsTer11	p.E360Afs*11	ENST00000353533	NM_003010.3	359	aaAGag/aaag																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68849476	68849477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	192	683	0	ENST00000261769.5:c.1380dup	p.Pro461ThrfsTer3	p.P461Tfs*3	ENST00000261769	NM_004360.3	460	gta/gtAa																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227662481	227662481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	48	397	1	ENST00000305123.5:c.974G>A	p.Arg325His	p.R325H	ENST00000305123	NM_005544.2	325	cGt/cAt																																													NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189612268	189612268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	84	395	0	ENST00000264731.3:c.2020C>T	p.Arg674Cys	p.R674C	ENST00000264731	NM_003722.4	674	Cgc/Tgc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1091	27	619	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180057642	180057642	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150416750		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	249	549	0	ENST00000261937.6:c.313G>A	p.Asp105Asn	p.D105N	ENST00000261937	NM_182925.4	105	Gac/Aac																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198270085	198270085	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	143	594	1	ENST00000335508.6:c.1351C>T	p.Arg451Ter	p.R451*	ENST00000335508	NM_012433.2	451	Cga/Tga																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45008529	45008529	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	330	458	0	ENST00000558401.1:c.349C>T	p.Arg117Ter	p.R117*	ENST00000558401	NM_004048.2	117	Cga/Tga																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66765883	66765883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	306	634	1	ENST00000374690.3:c.895G>A	p.Ala299Thr	p.A299T	ENST00000374690	NM_000044.3	299	Gca/Aca																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	13	414	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	175	581	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9546931	9546931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	89	446	0	ENST00000353224.5:c.1091C>T	p.Ser364Leu	p.S364L	ENST00000353224	NM_177990.2	364	tCg/tTg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913283		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	48	576	1	ENST00000263967.3:c.3129G>T	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atT																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16042434	16042434	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	133	610	0	ENST00000268712.3:c.1240C>T	p.Arg414Ter	p.R414*	ENST00000268712	NM_006311.3	414	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112177049	112177049	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	232	834	3	ENST00000257430.4:c.5758C>T	p.Arg1920Ter	p.R1920*	ENST00000257430	NM_000038.5	1920	Cga/Tga																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152201874	152201874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	154	446	2	ENST00000206249.3:c.728G>A	p.Arg243His	p.R243H	ENST00000206249	NM_000125.3	243	cGt/cAt																																													NEWRECORD																																		
CDC73	79577	MSKCC	GRCh37	1	193099338	193099338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	182	480	1	ENST00000367435.3:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000367435	NM_024529.4	91	cGa/cAa																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138453486	138453486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	240	579	2	ENST00000289153.2:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000289153	NM_006219.2	321	cGa/cAa																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604736	48604736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	184	557	0	ENST00000342988.3:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000342988	NM_005359.5	520	Gaa/Taa																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41743864	41743864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	204	550	0	ENST00000301178.4:c.799G>A	p.Asp267Asn	p.D267N	ENST00000301178	NM_021913.4	267	Gat/Aat																																													NEWRECORD																																		
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	248	625	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178938835	178938835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			36	23	26	0	ENST00000263967.3:c.2077C>T	p.Arg693Cys	p.R693C	ENST00000263967	NM_006218.2	693	Cgt/Tgt																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18573894	18573894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	169	522	0	ENST00000266497.5:c.2212C>T	p.Arg738Cys	p.R738C	ENST00000266497		738	Cgt/Tgt																																													NEWRECORD																																		
PMS1	5378	MSKCC	GRCh37	2	190660639	190660639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	155	426	0	ENST00000441310.2:c.277C>T	p.Arg93Cys	p.R93C	ENST00000441310	NM_000534.4	93	Cgt/Tgt																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44922973	44922973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	457	752	2	ENST00000377967.4:c.1834C>T	p.Arg612Ter	p.R612*	ENST00000377967	NM_021140.2	612	Cga/Tga																																													NEWRECORD																																		
SHQ1	55164	MSKCC	GRCh37	3	72890221	72890221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	123	556	0	ENST00000325599.8:c.461G>A	p.Arg154Gln	p.R154Q	ENST00000325599	NM_018130.2	154	cGa/cAa																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41275290	41275290	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113411271		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	71	448	0	ENST00000349496.5:c.1456C>T	p.Arg486Cys	p.R486C	ENST00000349496	NM_001904.3	486	Cgc/Tgc																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	202	572	0	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411444	63411444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	259	658	1	ENST00000330258.3:c.1723C>T	p.Arg575Trp	p.R575W	ENST00000330258	NM_152424.3	575	Cgg/Tgg																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116418997	116418997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	41	352	0	ENST00000397752.3:c.3508C>T	p.Arg1170Ter	p.R1170*	ENST00000397752	NM_000245.2	1170	Cga/Tga																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133760819	133760819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	202	478	0	ENST00000318560.5:c.3142G>A	p.Glu1048Lys	p.E1048K	ENST00000318560	NM_005157.4	1048	Gag/Aag																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484414	57484414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	357	470	0	ENST00000371085.3:c.595C>T	p.Arg199Cys	p.R199C	ENST00000371085	NM_000516.4	199	Cgc/Tgc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5225773	5225773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	91	527	0	ENST00000357368.4:c.2459G>A	p.Arg820His	p.R820H	ENST00000357368	NM_002850.3	820	cGc/cAc																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59770824	59770824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45572934		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	204	589	1	ENST00000259008.2:c.2542C>T	p.Arg848Cys	p.R848C	ENST00000259008	NM_032043.2	848	Cgc/Tgc																																													NEWRECORD																																		
IRF4	3662	MSKCC	GRCh37	6	394896	394896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	153	477	1	ENST00000380956.4:c.292C>T	p.Arg98Trp	p.R98W	ENST00000380956	NM_001195286.1	98	Cgg/Tgg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108216476	108216477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	211	500	1	ENST00000278616.4:c.8432dupA	p.Ser2812ValfsTer3	p.S2812Vfs*3	ENST00000278616	NM_000051.3	2809	caa/cAaa																																													NEWRECORD																																		
FOXO1	2308	MSKCC	GRCh37	13	41134142	41134142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144907712		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	122	727	0	ENST00000379561.5:c.1486G>A	p.Val496Ile	p.V496I	ENST00000379561	NM_002015.3	496	Gtc/Atc																																													NEWRECORD																																		
AKT3	10000	MSKCC	GRCh37	1	243716138	243716138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	198	634	0	ENST00000263826.5:c.1056G>T	p.Glu352Asp	p.E352D	ENST00000263826	NM_005465.4	352	gaG/gaT																																													NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189612028	189612028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	48	405	1	ENST00000264731.3:c.1780C>T	p.Arg594Ter	p.R594*	ENST00000264731	NM_003722.4	594	Cga/Tga																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40733279	40733279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201275244		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	247	432	1	ENST00000373198.4:c.3527G>A	p.Arg1176His	p.R1176H	ENST00000373198	NM_133170.3	1176	cGt/cAt																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66213873	66213873	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	61	613	1	ENST00000273854.3:c.2557C>T	p.Arg853Ter	p.R853*	ENST00000273854	NM_004439.5	853	Cga/Tga																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48955481	48955481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	81	600	0	ENST00000267163.4:c.1597G>A	p.Glu533Lys	p.E533K	ENST00000267163	NM_000321.2	533	Gaa/Aaa																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118366990	118366990	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	83	612	0	ENST00000534358.1:c.5572C>T	p.Arg1858Ter	p.R1858*	ENST00000534358	NM_005933.3	1858	Cga/Tga																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	192	507	1	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																													NEWRECORD																																		
CDK6	1021	MSKCC	GRCh37	7	92252390	92252390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	194	440	1	ENST00000265734.4:c.658C>T	p.Arg220Cys	p.R220C	ENST00000265734	NM_001259.6	220	Cgt/Tgt																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81331980	81331980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	203	625	0	ENST00000222390.5:c.2104C>T	p.Arg702Cys	p.R702C	ENST00000222390	NM_000601.4	702	Cgt/Tgt																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9624840	9624840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	113	534	0	ENST00000353224.5:c.137C>T	p.Thr46Met	p.T46M	ENST00000353224	NM_177990.2	46	aCg/aTg																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47698180	47698180	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	229	506	0	ENST00000233146.2:c.1738G>T	p.Glu580Ter	p.E580*	ENST00000233146	NM_000251.2	580	Gaa/Taa																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	51	411	2	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76938090	76938090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	270	589	0	ENST00000373344.5:c.2658G>T	p.Glu886Asp	p.E886D	ENST00000373344	NM_000489.3	886	gaG/gaT																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30715678	30715678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	228	527	0	ENST00000359013.4:c.1411G>A	p.Asp471Asn	p.D471N	ENST00000359013	NM_001024847.2	471	Gat/Aat																																													NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64132927	64132927	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145356210		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	202	523	2	ENST00000334205.4:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000334205	NM_003942.2	354	cGa/cAa																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65339175	65339175	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1180823763		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	188	445	0	ENST00000342505.4:c.361G>A	p.Asp121Asn	p.D121N	ENST00000342505	NM_002227.2	121	Gac/Aac																																													NEWRECORD																																		
NTRK2	4915	MSKCC	GRCh37	9	87570260	87570260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	120	445	0	ENST00000277120.3:c.2000C>T	p.Ser667Leu	p.S667L	ENST00000277120		667	tCg/tTg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	197	469	0	ENST00000269305.4:c.497C>A	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tAa																																													NEWRECORD																																		
ERRFI1	54206	MSKCC	GRCh37	1	8073739	8073739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	659	866	0	ENST00000377482.5:c.920C>T	p.Ser307Leu	p.S307L	ENST00000377482	NM_018948.3	307	tCg/tTg																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47162904	47162904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	221	622	0	ENST00000409792.3:c.3222G>T	p.Lys1074Asn	p.K1074N	ENST00000409792	NM_014159.6	1074	aaG/aaT																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55214404	55214404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	119	441	1	ENST00000275493.2:c.530C>T	p.Ser177Leu	p.S177L	ENST00000275493	NM_005228.3	177	tCg/tTg																																													NEWRECORD																																		
ERRFI1	54206	MSKCC	GRCh37	1	8073588	8073588	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	303	764	0	ENST00000377482.5:c.1071G>T	p.Lys357Asn	p.K357N	ENST00000377482	NM_018948.3	357	aaG/aaT																																													NEWRECORD																																		
PIK3CD	5293	MSKCC	GRCh37	1	9781554	9781554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	202	514	0	ENST00000377346.4:c.1864G>A	p.Glu622Lys	p.E622K	ENST00000377346	NM_005026.3	622	Gag/Aag																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11182154	11182154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	176	636	2	ENST00000361445.4:c.6692C>T	p.Ser2231Leu	p.S2231L	ENST00000361445	NM_004958.3	2231	tCg/tTg																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11269467	11269467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	57	563	0	ENST00000361445.4:c.3703C>T	p.Arg1235Trp	p.R1235W	ENST00000361445	NM_004958.3	1235	Cgg/Tgg																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11317015	11317015	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759750826		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	41	451	2	ENST00000361445.4:c.479G>A	p.Arg160His	p.R160H	ENST00000361445	NM_004958.3	160	cGc/cAc																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16245451	16245451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	120	487	0	ENST00000375759.3:c.1426C>T	p.Pro476Ser	p.P476S	ENST00000375759	NM_015001.2	476	Cct/Tct																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16256750	16256750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	169	516	1	ENST00000375759.3:c.4015C>T	p.Arg1339Cys	p.R1339C	ENST00000375759	NM_015001.2	1339	Cgt/Tgt																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16260188	16260188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	31	306	1	ENST00000375759.3:c.7453G>A	p.Ala2485Thr	p.A2485T	ENST00000375759	NM_015001.2	2485	Gcc/Acc																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16261472	16261472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	166	491	0	ENST00000375759.3:c.8737G>A	p.Glu2913Lys	p.E2913K	ENST00000375759	NM_015001.2	2913	Gag/Aag																																													NEWRECORD																																		
MUTYH	4595	MSKCC	GRCh37	1	45799114	45799114	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	245	618	1	ENST00000372115.3:c.277G>T	p.Glu93Ter	p.E93*	ENST00000372115	NM_001048171.1	93	Gag/Tag																																													NEWRECORD																																		
PIK3R3	8503	MSKCC	GRCh37	1	46531836	46531836	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	199	471	1	ENST00000262741.5:c.511G>T	p.Glu171Ter	p.E171*	ENST00000262741	NM_003629.3	171	Gaa/Taa																																													NEWRECORD																																		
RAD54L	8438	MSKCC	GRCh37	1	46743755	46743755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	87	546	0	ENST00000371975.4:c.2045G>A	p.Arg682Gln	p.R682Q	ENST00000371975	NM_003579.3	682	cGa/cAa																																													NEWRECORD																																		
JUN	3725	MSKCC	GRCh37	1	59248229	59248229	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	15	30	0	ENST00000371222.2:c.514A>T	p.Asn172Tyr	p.N172Y	ENST00000371222	NM_002228.3	172	Aac/Tac																																													NEWRECORD																																		
JUN	3725	MSKCC	GRCh37	1	59248575	59248575	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	103	556	0	ENST00000371222.2:c.168G>T	p.Lys56Asn	p.K56N	ENST00000371222	NM_002228.3	56	aaG/aaT																																													NEWRECORD																																		
JUN	3725	MSKCC	GRCh37	1	59248629	59248629	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	231	526	0	ENST00000371222.2:c.114G>T	p.Met38Ile	p.M38I	ENST00000371222	NM_002228.3	38	atG/atT																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65309764	65309764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	182	459	1	ENST00000342505.4:c.2386G>T	p.Asp796Tyr	p.D796Y	ENST00000342505	NM_002227.2	796	Gac/Tac																																													NEWRECORD																																		
NEGR1	257194	MSKCC	GRCh37	1	71873218	71873218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	114	791	3	ENST00000357731.5:c.976G>A	p.Ala326Thr	p.A326T	ENST00000357731	NM_173808.2	326	Gct/Act																																													NEWRECORD																																		
FAM46C	54855	MSKCC	GRCh37	1	118165662	118165662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	231	531	0	ENST00000369448.3:c.172C>T	p.Arg58Trp	p.R58W	ENST00000369448	NM_017709.3	58	Cgg/Tgg																																													NEWRECORD																																		
FAM46C	54855	MSKCC	GRCh37	1	118166010	118166010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	199	463	0	ENST00000369448.3:c.520C>T	p.Arg174Trp	p.R174W	ENST00000369448	NM_017709.3	174	Cgg/Tgg																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120459215	120459215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	117	525	0	ENST00000256646.2:c.6130C>T	p.Arg2044Cys	p.R2044C	ENST00000256646	NM_024408.3	2044	Cgt/Tgt																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120462920	120462920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	48	425	0	ENST00000256646.2:c.5411C>T	p.Ser1804Leu	p.S1804L	ENST00000256646	NM_024408.3	1804	tCg/tTg																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156834588	156834588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	213	505	1	ENST00000524377.1:c.356G>A	p.Arg119His	p.R119H	ENST00000524377	NM_002529.3	119	cGc/cAc																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156841520	156841520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	197	502	0	ENST00000524377.1:c.823G>A	p.Glu275Lys	p.E275K	ENST00000524377	NM_002529.3	275	Gag/Aag																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156844404	156844404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1191	109	743	2	ENST00000524377.1:c.1237G>A	p.Glu413Lys	p.E413K	ENST00000524377	NM_002529.3	413	Gaa/Aaa																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162740230	162740230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs34869543		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	207	586	0	ENST00000367921.3:c.1432C>T	p.Arg478Cys	p.R478C	ENST00000367921	NM_006182.2	478	Cgc/Tgc																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162740264	162740264	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756149068		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	210	550	1	ENST00000367921.3:c.1466G>A	p.Arg489Gln	p.R489Q	ENST00000367921	NM_006182.2	489	cGa/cAa																																													NEWRECORD																																		
CDC73	79577	MSKCC	GRCh37	1	193219807	193219807	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	120	356	0	ENST00000367435.3:c.1561T>C	p.Tyr521His	p.Y521H	ENST00000367435	NM_024529.4	521	Tac/Cac																																													NEWRECORD																																		
IL10	3586	MSKCC	GRCh37	1	206945657	206945657	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	241	640	1	ENST00000423557.1:c.124C>T	p.Arg42Ter	p.R42*	ENST00000423557	NM_000572.2	42	Cga/Tga																																													NEWRECORD																																		
FH	2271	MSKCC	GRCh37	1	241661199	241661199	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201115573		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	220	506	0	ENST00000366560.3:c.1462G>A	p.Glu488Lys	p.E488K	ENST00000366560	NM_000143.3	488	Gaa/Aaa																																													NEWRECORD																																		
AKT3	10000	MSKCC	GRCh37	1	243858945	243858945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	124	586	2	ENST00000263826.5:c.120G>T	p.Glu40Asp	p.E40D	ENST00000263826	NM_005465.4	40	gaG/gaT																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47690253	47690253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	134	585	0	ENST00000233146.2:c.1470G>T	p.Lys490Asn	p.K490N	ENST00000233146	NM_000251.2	490	aaG/aaT																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48033396	48033396	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	227	640	0	ENST00000234420.5:c.3700G>T	p.Glu1234Ter	p.E1234*	ENST00000234420	NM_000179.2	1234	Gaa/Taa																																													NEWRECORD																																		
XPO1	7514	MSKCC	GRCh37	2	61709651	61709651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	196	408	0	ENST00000401558.2:c.2836C>A	p.Leu946Ile	p.L946I	ENST00000401558	NM_003400.3	946	Ctt/Att																																													NEWRECORD																																		
XPO1	7514	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	114	574	2	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																													NEWRECORD																																		
INPP4A	3631	MSKCC	GRCh37	2	99152649	99152649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	250	635	0	ENST00000074304.5:c.445C>A	p.His149Asn	p.H149N	ENST00000074304	NM_001134224.1	149	Cat/Aat																																													NEWRECORD																																		
PMS1	5378	MSKCC	GRCh37	2	190656594	190656594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	196	602	0	ENST00000441310.2:c.59C>T	p.Ser20Leu	p.S20L	ENST00000441310	NM_000534.4	20	tCg/tTg																																													NEWRECORD																																		
PMS1	5378	MSKCC	GRCh37	2	190719513	190719513	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	183	519	0	ENST00000441310.2:c.1515A>C	p.Lys505Asn	p.K505N	ENST00000441310	NM_000534.4	505	aaA/aaC																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198266828	198266828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs16865307		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	186	493	1	ENST00000335508.6:c.2104C>T	p.Arg702Trp	p.R702W	ENST00000335508	NM_012433.2	702	Cgg/Tgg																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212570064	212570064	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55671017		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	177	521	0	ENST00000342788.4:c.1177C>T	p.Arg393Trp	p.R393W	ENST00000342788	NM_005235.2	393	Cgg/Tgg																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212812263	212812263	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	71	564	0	ENST00000342788.4:c.313A>T	p.Ile105Phe	p.I105F	ENST00000342788	NM_005235.2	105	Att/Ttt																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227660213	227660213	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372681714		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	194	532	1	ENST00000305123.5:c.3242G>A	p.Arg1081His	p.R1081H	ENST00000305123	NM_005544.2	1081	cGc/cAc																																													NEWRECORD																																		
RAF1	5894	MSKCC	GRCh37	3	12650389	12650389	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	179	523	0	ENST00000251849.4:c.457G>T	p.Asp153Tyr	p.D153Y	ENST00000251849	NM_002880.3	153	Gac/Tac																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47158222	47158222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	98	396	0	ENST00000409792.3:c.4477G>T	p.Asp1493Tyr	p.D1493Y	ENST00000409792	NM_014159.6	1493	Gat/Tat																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47162039	47162039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	220	521	0	ENST00000409792.3:c.4087G>A	p.Asp1363Asn	p.D1363N	ENST00000409792	NM_014159.6	1363	Gac/Aac																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47162812	47162812	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	147	396	0	ENST00000409792.3:c.3314G>T	p.Arg1105Ile	p.R1105I	ENST00000409792	NM_014159.6	1105	aGa/aTa																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49933462	49933462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	267	662	1	ENST00000296474.3:c.2728C>T	p.Arg910Trp	p.R910W	ENST00000296474	NM_002447.2	910	Cgg/Tgg																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52637690	52637690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	244	547	0	ENST00000394830.3:c.2626C>T	p.Arg876Cys	p.R876C	ENST00000394830	NM_018313.4	876	Cgt/Tgt																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52685797	52685797	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	221	582	0	ENST00000394830.3:c.675G>T	p.Lys225Asn	p.K225N	ENST00000394830	NM_018313.4	225	aaG/aaT																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71090524	71090524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	193	634	1	ENST00000318789.4:c.824C>T	p.Ala275Val	p.A275V	ENST00000318789	NM_032682.5	275	gCc/gTc																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89259265	89259265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	53	564	0	ENST00000336596.2:c.409G>A	p.Glu137Lys	p.E137K	ENST00000336596	NM_005233.5	137	Gag/Aag																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89259409	89259409	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	244	778	0	ENST00000336596.2:c.553G>T	p.Asp185Tyr	p.D185Y	ENST00000336596	NM_005233.5	185	Gat/Tat																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89259413	89259413	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	79	779	0	ENST00000336596.2:c.557T>C	p.Val186Ala	p.V186A	ENST00000336596	NM_005233.5	186	gTt/gCt																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89390995	89390995	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144727411		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	164	637	0	ENST00000336596.2:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000336596	NM_005233.5	354	cGg/cAg																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138403560	138403560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	211	609	3	ENST00000289153.2:c.2222C>T	p.Ala741Val	p.A741V	ENST00000289153	NM_006219.2	741	gCc/gTc																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138417901	138417901	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	180	400	0	ENST00000289153.2:c.1618G>T	p.Glu540Ter	p.E540*	ENST00000289153	NM_006219.2	540	Gaa/Taa																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138423304	138423304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	170	502	0	ENST00000289153.2:c.1562G>A	p.Ser521Asn	p.S521N	ENST00000289153	NM_006219.2	521	aGt/aAt																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142231170	142231170	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	263	633	0	ENST00000350721.4:c.4784A>C	p.Lys1595Thr	p.K1595T	ENST00000350721	NM_001184.3	1595	aAa/aCa																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142269009	142269009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	217	646	0	ENST00000350721.4:c.2941G>A	p.Val981Ile	p.V981I	ENST00000350721	NM_001184.3	981	Gtt/Att																																													NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185191251	185191251	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	68	341	0	ENST00000265026.3:c.2132C>A	p.Ser711Tyr	p.S711Y	ENST00000265026	NM_004721.4	711	tCt/tAt																																													NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185191437	185191437	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	114	486	0	ENST00000265026.3:c.2318C>A	p.Ser773Tyr	p.S773Y	ENST00000265026	NM_004721.4	773	tCt/tAt																																													NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189582042	189582042	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	205	481	0	ENST00000264731.3:c.601C>A	p.Leu201Ile	p.L201I	ENST00000264731	NM_003722.4	201	Ctc/Atc																																													NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1808377	1808377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	62	486	0	ENST00000260795.2:c.2135G>A	p.Arg712His	p.R712H	ENST00000260795		712	cGc/cAc																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55140793	55140793	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	178	390	1	ENST00000257290.5:c.1653+1G>A		p.X551_splice	ENST00000257290	NM_006206.4	551																																														NEWRECORD																																		
KIT	3815	MSKCC	GRCh37	4	55573323	55573323	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	232	556	2	ENST00000288135.5:c.985G>T	p.Glu329Ter	p.E329*	ENST00000288135	NM_000222.2	329	Gaa/Taa																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55955615	55955615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	108	549	0	ENST00000263923.4:c.3330G>T	p.Lys1110Asn	p.K1110N	ENST00000263923	NM_002253.2	1110	aaG/aaT																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55981166	55981166	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	180	686	0	ENST00000263923.4:c.533C>A	p.Ser178Tyr	p.S178Y	ENST00000263923	NM_002253.2	178	tCc/tAc																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66197845	66197845	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	39	423	0	ENST00000273854.3:c.2854G>T	p.Val952Leu	p.V952L	ENST00000273854	NM_004439.5	952	Gta/Tta																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66201816	66201816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	72	446	1	ENST00000273854.3:c.2686C>T	p.Arg896Cys	p.R896C	ENST00000273854	NM_004439.5	896	Cgt/Tgt																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66231757	66231757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	105	504	0	ENST00000273854.3:c.1943G>A	p.Arg648Lys	p.R648K	ENST00000273854	NM_004439.5	648	aGa/aAa																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66286171	66286171	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	109	608	1	ENST00000273854.3:c.1515G>T	p.Lys505Asn	p.K505N	ENST00000273854	NM_004439.5	505	aaG/aaT																																													NEWRECORD																																		
EIF4E	1977	MSKCC	GRCh37	4	99812457	99812457	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	201	537	0	ENST00000280892.6:c.212A>G	p.Asp71Gly	p.D71G	ENST00000280892	NM_001130678.1	71	gAt/gGt																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106155491	106155491	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	55	629	0	ENST00000380013.4:c.392G>T	p.Arg131Ile	p.R131I	ENST00000380013	NM_001127208.2	131	aGa/aTa																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106164897	106164897	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	78	358	0	ENST00000380013.4:c.3765C>A	p.Tyr1255Ter	p.Y1255*	ENST00000380013	NM_001127208.2	1255	taC/taA																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106180834	106180834	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	163	536	0	ENST00000380013.4:c.3862G>T	p.Gly1288Cys	p.G1288C	ENST00000380013	NM_001127208.2	1288	Ggt/Tgt																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106196355	106196355	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	263	643	0	ENST00000380013.4:c.4688C>A	p.Ser1563Tyr	p.S1563Y	ENST00000380013	NM_001127208.2	1563	tCt/tAt																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153332586	153332586	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768666009		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	96	601	2	ENST00000281708.4:c.370G>A	p.Asp124Asn	p.D124N	ENST00000281708	NM_033632.3	124	Gat/Aat																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153332946	153332946	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	72	329	0	ENST00000281708.4:c.10G>T	p.Glu4Ter	p.E4*	ENST00000281708	NM_033632.3	4	Gaa/Taa																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187518306	187518306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	13	151	0	ENST00000441802.2:c.12388G>A	p.Glu4130Lys	p.E4130K	ENST00000441802	NM_005245.3	4130	Gag/Aag																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187524933	187524933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	79	642	2	ENST00000441802.2:c.10747G>A	p.Asp3583Asn	p.D3583N	ENST00000441802	NM_005245.3	3583	Gac/Aac																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187527280	187527280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	201	410	0	ENST00000441802.2:c.10294G>A	p.Asp3432Asn	p.D3432N	ENST00000441802	NM_005245.3	3432	Gat/Aat																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187532645	187532645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	247	514	0	ENST00000441802.2:c.9748C>A	p.Leu3250Ile	p.L3250I	ENST00000441802	NM_005245.3	3250	Ctt/Att																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1260645	1260645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	241	480	1	ENST00000310581.5:c.2914C>T	p.Arg972Cys	p.R972C	ENST00000310581	NM_198253.2	972	Cgc/Tgc																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38959942	38959942	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	206	623	0	ENST00000357387.3:c.1990G>T	p.Gly664Ter	p.G664*	ENST00000357387	NM_152756.3	664	Gga/Tga																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38960001	38960001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	86	494	0	ENST00000357387.3:c.1931G>A	p.Arg644Lys	p.R644K	ENST00000357387	NM_152756.3	644	aGa/aAa																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56161716	56161716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	70	525	0	ENST00000399503.3:c.1213C>T	p.Arg405Cys	p.R405C	ENST00000399503	NM_005921.1	405	Cgt/Tgt																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56177587	56177587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	214	618	1	ENST00000399503.3:c.2560C>T	p.Arg854Cys	p.R854C	ENST00000399503	NM_005921.1	854	Cgc/Tgc																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56178104	56178104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	142	413	0	ENST00000399503.3:c.3077C>A	p.Ser1026Tyr	p.S1026Y	ENST00000399503	NM_005921.1	1026	tCt/tAt																																													NEWRECORD																																		
PLK2	10769	MSKCC	GRCh37	5	57750466	57750466	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	216	658	0	ENST00000274289.3:c.2002G>T	p.Glu668Ter	p.E668*	ENST00000274289	NM_006622.3	668	Gaa/Taa																																													NEWRECORD																																		
PLK2	10769	MSKCC	GRCh37	5	57751901	57751901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148954251		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	241	584	0	ENST00000274289.3:c.1336C>T	p.Arg446Trp	p.R446W	ENST00000274289	NM_006622.3	446	Cgg/Tgg																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67592027	67592027	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	147	480	1	ENST00000274335.5:c.1843G>T	p.Asp615Tyr	p.D615Y	ENST00000274335		615	Gat/Tat																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86672219	86672219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	103	297	0	ENST00000274376.6:c.2021G>A	p.Arg674His	p.R674H	ENST00000274376	NM_002890.2	674	cGc/cAc																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86672842	86672842	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	131	390	0	ENST00000274376.6:c.2329G>T	p.Glu777Ter	p.E777*	ENST00000274376	NM_002890.2	777	Gaa/Taa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112111392	112111392	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	65	498	1	ENST00000257430.4:c.489G>T	p.Gln163His	p.Q163H	ENST00000257430	NM_000038.5	163	caG/caT																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173977	112173977	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	117	452	0	ENST00000257430.4:c.2686G>T	p.Ala896Ser	p.A896S	ENST00000257430	NM_000038.5	896	Gcc/Tcc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174119	112174119	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	167	501	0	ENST00000257430.4:c.2828C>A	p.Ser943Ter	p.S943*	ENST00000257430	NM_000038.5	943	tCa/tAa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175780	112175780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	147	455	0	ENST00000257430.4:c.4489C>T	p.Pro1497Ser	p.P1497S	ENST00000257430	NM_000038.5	1497	Cca/Tca																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112176008	112176008	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	176	479	0	ENST00000257430.4:c.4717G>T	p.Glu1573Ter	p.E1573*	ENST00000257430	NM_000038.5	1573	Gaa/Taa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112177839	112177839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	133	502	0	ENST00000257430.4:c.6548C>A	p.Ser2183Tyr	p.S2183Y	ENST00000257430	NM_000038.5	2183	tCt/tAt																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131911614	131911614	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	132	481	0	ENST00000265335.6:c.359G>T	p.Arg120Ile	p.R120I	ENST00000265335		120	aGa/aTa																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131931471	131931471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	160	431	1	ENST00000265335.6:c.2176C>T	p.Arg726Cys	p.R726C	ENST00000265335		726	Cgt/Tgt																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149498372	149498372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	214	553	1	ENST00000261799.4:c.2842C>T	p.Arg948Trp	p.R948W	ENST00000261799	NM_002609.3	948	Cgg/Tgg																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176671232	176671232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	222	561	0	ENST00000439151.2:c.4339G>A	p.Glu1447Lys	p.E1447K	ENST00000439151	NM_022455.4	1447	Gaa/Aaa																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176707616	176707616	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	217	443	1	ENST00000439151.2:c.5673A>T	p.Glu1891Asp	p.E1891D	ENST00000439151	NM_022455.4	1891	gaA/gaT																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180048238	180048238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	56	397	2	ENST00000261937.6:c.2035C>T	p.Arg679Trp	p.R679W	ENST00000261937	NM_182925.4	679	Cgg/Tgg																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180051042	180051042	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	118	431	0	ENST00000261937.6:c.1441G>T	p.Asp481Tyr	p.D481Y	ENST00000261937	NM_182925.4	481	Gac/Tac																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180057657	180057657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	239	538	0	ENST00000261937.6:c.298G>A	p.Glu100Lys	p.E100K	ENST00000261937	NM_182925.4	100	Gag/Aag																																													NEWRECORD																																		
IRF4	3662	MSKCC	GRCh37	6	405083	405083	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	219	506	0	ENST00000380956.4:c.1165G>T	p.Glu389Ter	p.E389*	ENST00000380956	NM_001195286.1	389	Gag/Tag																																													NEWRECORD																																		
E2F3	1871	MSKCC	GRCh37	6	20480138	20480138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	58	586	0	ENST00000346618.3:c.455C>A	p.Thr152Asn	p.T152N	ENST00000346618	NM_001949.4	152	aCc/aAc																																													NEWRECORD																																		
E2F3	1871	MSKCC	GRCh37	6	20481526	20481526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	169	556	0	ENST00000346618.3:c.595G>A	p.Asp199Asn	p.D199N	ENST00000346618	NM_001949.4	199	Gat/Aat																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30672425	30672425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	83	585	2	ENST00000376406.3:c.4535C>A	p.Ser1512Tyr	p.S1512Y	ENST00000376406	NM_014641.2	1512	tCt/tAt																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32181576	32181576	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	228	617	1	ENST00000375023.3:c.2209C>A	p.Pro737Thr	p.P737T	ENST00000375023	NM_004557.3	737	Cca/Aca																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	93965655	93965655	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	212	785	0	ENST00000369303.4:c.2273A>G	p.Asp758Gly	p.D758G	ENST00000369303	NM_004440.3	758	gAc/gGc																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	94066675	94066675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	239	822	0	ENST00000369303.4:c.1084G>A	p.Asp362Asn	p.D362N	ENST00000369303	NM_004440.3	362	Gat/Aat																																													NEWRECORD																																		
PRDM1	639	MSKCC	GRCh37	6	106555357	106555357	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	39	242	0	ENST00000369096.4:c.2474C>A	p.Pro825His	p.P825H	ENST00000369096	NM_001198.3	825	cCt/cAt																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117609891	117609891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	149	648	1	ENST00000368508.3:c.6808G>A	p.Glu2270Lys	p.E2270K	ENST00000368508	NM_002944.2	2270	Gaa/Aaa																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117642538	117642538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	205	793	0	ENST00000368508.3:c.5661G>T	p.Lys1887Asn	p.K1887N	ENST00000368508	NM_002944.2	1887	aaG/aaT																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117665330	117665330	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	194	654	0	ENST00000368508.3:c.4417A>G	p.Thr1473Ala	p.T1473A	ENST00000368508	NM_002944.2	1473	Aca/Gca																																													NEWRECORD																																		
IFNGR1	3459	MSKCC	GRCh37	6	137519320	137519320	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	62	508	0	ENST00000367739.4:c.1318A>G	p.Thr440Ala	p.T440A	ENST00000367739	NM_000416.2	440	Aca/Gca																																													NEWRECORD																																		
IFNGR1	3459	MSKCC	GRCh37	6	137527407	137527407	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	142	385	0	ENST00000367739.4:c.239T>G	p.Ile80Ser	p.I80S	ENST00000367739	NM_000416.2	80	aTt/aGt																																													NEWRECORD																																		
TNFAIP3	7128	MSKCC	GRCh37	6	138192453	138192453	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	81	461	0	ENST00000237289.4:c.89T>G	p.Phe30Cys	p.F30C	ENST00000237289	NM_001270507.1	30	tTt/tGt																																													NEWRECORD																																		
TNFAIP3	7128	MSKCC	GRCh37	6	138202200	138202200	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3734553		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	178	425	0	ENST00000237289.4:c.2117G>A	p.Arg706Gln	p.R706Q	ENST00000237289	NM_001270507.1	706	cGa/cAa																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152265569	152265569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	118	447	1	ENST00000206249.3:c.1022C>T	p.Ser341Leu	p.S341L	ENST00000206249	NM_000125.3	341	tCg/tTg																																													NEWRECORD																																		
PARK2	5071	MSKCC	GRCh37	6	161807901	161807901	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	151	427	1	ENST00000366898.1:c.1092C>A	p.Phe364Leu	p.F364L	ENST00000366898	NM_004562.2	364	ttC/ttA																																													NEWRECORD																																		
PMS2	5395	MSKCC	GRCh37	7	6031649	6031649	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs200640585		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	223	486	0	ENST00000265849.7:c.943C>T	p.Arg315Ter	p.R315*	ENST00000265849	NM_000535.5	315	Cga/Tga																																													NEWRECORD																																		
ETV1	2115	MSKCC	GRCh37	7	13946174	13946174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	146	448	0	ENST00000405192.2:c.922C>T	p.Arg308Trp	p.R308W	ENST00000405192	NM_001163147.1	308	Cgg/Tgg																																													NEWRECORD																																		
INHBA	3624	MSKCC	GRCh37	7	41739756	41739756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	263	850	0	ENST00000242208.4:c.217G>A	p.Asp73Asn	p.D73N	ENST00000242208	NM_002192.2	73	Gat/Aat																																													NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50444384	50444384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	166	437	1	ENST00000331340.3:c.314C>T	p.Ser105Leu	p.S105L	ENST00000331340	NM_006060.4	105	tCg/tTg																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55270242	55270242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	183	542	0	ENST00000275493.2:c.3195C>A	p.Phe1065Leu	p.F1065L	ENST00000275493	NM_005228.3	1065	ttC/ttA																																													NEWRECORD																																		
CDK6	1021	MSKCC	GRCh37	7	92404101	92404101	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	234	463	0	ENST00000265734.4:c.278A>C	p.Lys93Thr	p.K93T	ENST00000265734	NM_001259.6	93	aAa/aCa																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106508514	106508514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	55	182	1	ENST00000359195.3:c.508G>A	p.Asp170Asn	p.D170N	ENST00000359195	NM_002649.2	170	Gac/Aac																																													NEWRECORD																																		
EZH2	2146	MSKCC	GRCh37	7	148504761	148504761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	87	573	1	ENST00000320356.2:c.2233G>A	p.Glu745Lys	p.E745K	ENST00000320356	NM_004456.4	745	Gaa/Aaa																																													NEWRECORD																																		
EZH2	2146	MSKCC	GRCh37	7	148523708	148523708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	156	438	1	ENST00000320356.2:c.745G>A	p.Glu249Lys	p.E249K	ENST00000320356	NM_004456.4	249	Gaa/Aaa																																													NEWRECORD																																		
RHEB	6009	MSKCC	GRCh37	7	151167676	151167676	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	171	464	0	ENST00000262187.5:c.443C>A	p.Ser148Tyr	p.S148Y	ENST00000262187	NM_005614.3	148	tCt/tAt																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151849924	151849924	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	59	547	1	ENST00000262189.6:c.12392G>T	p.Arg4131Ile	p.R4131I	ENST00000262189	NM_170606.2	4131	aGa/aTa																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151874122	151874122	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	234	586	0	ENST00000262189.6:c.8416C>A	p.Leu2806Ile	p.L2806I	ENST00000262189	NM_170606.2	2806	Ctc/Atc																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151879229	151879229	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	55	705	0	ENST00000262189.6:c.5716C>T	p.Arg1906Ter	p.R1906*	ENST00000262189	NM_170606.2	1906	Cga/Tga																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	152055703	152055703	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	255	625	1	ENST00000262189.6:c.219G>T	p.Glu73Asp	p.E73D	ENST00000262189	NM_170606.2	73	gaG/gaT																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	152132768	152132768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	150	329	0	ENST00000262189.6:c.104G>T	p.Arg35Ile	p.R35I	ENST00000262189	NM_170606.2	35	aGa/aTa																																													NEWRECORD																																		
XRCC2	7516	MSKCC	GRCh37	7	152357831	152357831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	291	718	0	ENST00000359321.1:c.76G>A	p.Glu26Lys	p.E26K	ENST00000359321	NM_005431.1	26	Gaa/Aaa																																													NEWRECORD																																		
FGFR1	2260	MSKCC	GRCh37	8	38287386	38287386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	56	501	1	ENST00000425967.3:c.271C>T	p.Arg91Trp	p.R91W	ENST00000425967	NM_001174067.1	91	Cgg/Tgg																																													NEWRECORD																																		
FGFR1	2260	MSKCC	GRCh37	8	38315038	38315038	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	192	508	0	ENST00000425967.3:c.26G>T	p.Arg9Met	p.R9M	ENST00000425967	NM_001174067.1	9	aGg/aTg																																													NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90993715	90993715	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	157	347	0	ENST00000265433.3:c.208G>T	p.Asp70Tyr	p.D70Y	ENST00000265433	NM_002485.4	70	Gat/Tat																																													NEWRECORD																																		
PAX5	5079	MSKCC	GRCh37	9	37015094	37015094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	192	528	0	ENST00000358127.4:c.310C>T	p.Arg104Cys	p.R104C	ENST00000358127	NM_001280556.1	104	Cgc/Tgc																																													NEWRECORD																																		
NTRK2	4915	MSKCC	GRCh37	9	87482281	87482281	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	89	629	0	ENST00000277120.3:c.1568A>C	p.Lys523Thr	p.K523T	ENST00000277120		523	aAg/aCg																																													NEWRECORD																																		
FANCC	2176	MSKCC	GRCh37	9	98011455	98011455	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	184	596	0	ENST00000289081.3:c.119A>G	p.Gln40Arg	p.Q40R	ENST00000289081	NM_000136.2	40	cAg/cGg																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98224263	98224263	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	146	408	0	ENST00000331920.6:c.2578G>T	p.Asp860Tyr	p.D860Y	ENST00000331920	NM_000264.3	860	Gac/Tac																																													NEWRECORD																																		
PPP6C	5537	MSKCC	GRCh37	9	127912029	127912029	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	276	777	0	ENST00000373547.4:c.841G>T	p.Glu281Ter	p.E281*	ENST00000373547	NM_002721.4	281	Gaa/Taa																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135781068	135781068	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1003	286	789	0	ENST00000298552.3:c.1897G>T	p.Gly633Ter	p.G633*	ENST00000298552	NM_001162426.1	633	Gga/Tga																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139400310	139400310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	49	174	0	ENST00000277541.6:c.4038G>T	p.Glu1346Asp	p.E1346D	ENST00000277541	NM_017617.3	1346	gaG/gaT																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139412302	139412302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	45	473	1	ENST00000277541.6:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000277541	NM_017617.3	448	cGa/cAa																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8100366	8100366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	202	599	0	ENST00000346208.3:c.340C>A	p.Leu114Ile	p.L114I	ENST00000346208		114	Ctc/Atc																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63852488	63852488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	152	432	1	ENST00000279873.7:c.3266C>T	p.Ser1089Leu	p.S1089L	ENST00000279873	NM_032199.2	1089	tCg/tTg																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63852527	63852527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	169	428	0	ENST00000279873.7:c.3305C>A	p.Ser1102Tyr	p.S1102Y	ENST00000279873	NM_032199.2	1102	tCt/tAt																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70406325	70406325	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	64	580	0	ENST00000373644.4:c.3839A>C	p.Lys1280Thr	p.K1280T	ENST00000373644	NM_030625.2	1280	aAa/aCa																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70450907	70450907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	70	371	0	ENST00000373644.4:c.5747C>A	p.Pro1916His	p.P1916H	ENST00000373644	NM_030625.2	1916	cCt/cAt																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114901057	114901057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	308	727	1	ENST00000543371.1:c.667G>A	p.Asp223Asn	p.D223N	ENST00000543371	NM_001198531.1	223	Gac/Aac																																													NEWRECORD																																		
FGFR2	2263	MSKCC	GRCh37	10	123274691	123274691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	250	494	1	ENST00000358487.5:c.1227C>A	p.Phe409Leu	p.F409L	ENST00000358487	NM_000141.4	409	ttC/ttA																																													NEWRECORD																																		
IGF2	3481	MSKCC	GRCh37	11	2156731	2156731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	46	535	0	ENST00000434045.2:c.191C>T	p.Ser64Leu	p.S64L	ENST00000434045	NM_001127598.1	64	tCg/tTg																																													NEWRECORD																																		
IGF2	3481	MSKCC	GRCh37	11	2161506	2161506	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	173	412	0	ENST00000434045.2:c.21A>C	p.Gln7His	p.Q7H	ENST00000434045	NM_001127598.1	7	caA/caC																																													NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64138828	64138828	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	137	336	0	ENST00000334205.4:c.2195A>C	p.Lys732Thr	p.K732T	ENST00000334205	NM_003942.2	732	aAg/aCg																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64573823	64573823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	135	408	0	ENST00000337652.1:c.945G>T	p.Lys315Asn	p.K315N	ENST00000337652	NM_130803.2	315	aaG/aaT																																													NEWRECORD																																		
PAK1	5058	MSKCC	GRCh37	11	77048448	77048448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	110	544	2	ENST00000356341.3:c.1137C>A	p.Phe379Leu	p.F379L	ENST00000356341	NM_002576.4	379	ttC/ttA																																													NEWRECORD																																		
PAK1	5058	MSKCC	GRCh37	11	77091008	77091008	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	234	519	1	ENST00000356341.3:c.222G>T	p.Glu74Asp	p.E74D	ENST00000356341	NM_002576.4	74	gaG/gaT																																													NEWRECORD																																		
MRE11A	4361	MSKCC	GRCh37	11	94203791	94203791	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs190142346		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	31	438	0	ENST00000323929.3:c.863G>A	p.Arg288His	p.R288H	ENST00000323929	NM_005591.3	288	cGt/cAt																																													NEWRECORD																																		
YAP1	10413	MSKCC	GRCh37	11	102100619	102100619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	127	463	0	ENST00000282441.5:c.1463C>A	p.Ser488Tyr	p.S488Y	ENST00000282441	NM_001130145.2	488	tCt/tAt																																													NEWRECORD																																		
YAP1	10413	MSKCC	GRCh37	11	102100657	102100657	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	55	339	0	ENST00000282441.5:c.1501C>A	p.Leu501Ile	p.L501I	ENST00000282441	NM_001130145.2	501	Ctt/Att																																													NEWRECORD																																		
BIRC3	330	MSKCC	GRCh37	11	102195344	102195344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	348	829	1	ENST00000263464.3:c.104C>T	p.Thr35Met	p.T35M	ENST00000263464	NM_001165.4	35	aCg/aTg																																													NEWRECORD																																		
BIRC3	330	MSKCC	GRCh37	11	102206945	102206945	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	257	608	0	ENST00000263464.3:c.1573T>G	p.Leu525Val	p.L525V	ENST00000263464	NM_001165.4	525	Tta/Gta																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108155090	108155090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	172	481	0	ENST00000278616.4:c.3883C>T	p.Leu1295Phe	p.L1295F	ENST00000278616	NM_000051.3	1295	Ctt/Ttt																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108158328	108158328	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	144	418	0	ENST00000278616.4:c.3995T>G	p.Ile1332Ser	p.I1332S	ENST00000278616	NM_000051.3	1332	aTt/aGt																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108203492	108203492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138941496		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	150	394	0	ENST00000278616.4:c.7792C>T	p.Arg2598Ter	p.R2598*	ENST00000278616	NM_000051.3	2598	Cga/Tga																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118339501	118339501	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	63	445	0	ENST00000534358.1:c.444C>A	p.Phe148Leu	p.F148L	ENST00000534358	NM_005933.3	148	ttC/ttA																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118375758	118375758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	114	591	1	ENST00000534358.1:c.9151C>T	p.Pro3051Ser	p.P3051S	ENST00000534358	NM_005933.3	3051	Ccc/Tcc																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118376605	118376605	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	222	499	0	ENST00000534358.1:c.9998C>A	p.Ser3333Tyr	p.S3333Y	ENST00000534358	NM_005933.3	3333	tCt/tAt																																													NEWRECORD																																		
CBL	867	MSKCC	GRCh37	11	119148534	119148534	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	226	601	1	ENST00000264033.4:c.1075G>T	p.Asp359Tyr	p.D359Y	ENST00000264033	NM_005188.3	359	Gac/Tac																																													NEWRECORD																																		
CHEK1	1111	MSKCC	GRCh37	11	125503175	125503175	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	112	557	0	ENST00000428830.2:c.542G>T	p.Arg181Ile	p.R181I	ENST00000428830	NM_001114121.2	181	aGa/aTa																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	402109	402109	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	291	740	0	ENST00000399788.2:c.4682G>T	p.Arg1561Ile	p.R1561I	ENST00000399788	NM_001042603.1	1561	aGa/aTa																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	472145	472145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	220	531	0	ENST00000399788.2:c.656G>A	p.Arg219Lys	p.R219K	ENST00000399788	NM_001042603.1	219	aGa/aAa																																													NEWRECORD																																		
RAD52	5893	MSKCC	GRCh37	12	1034621	1034621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1120	110	662	2	ENST00000358495.3:c.538C>T	p.Arg180Cys	p.R180C	ENST00000358495	NM_134424.2	180	Cgc/Tgc																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18466993	18466993	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	36	539	0	ENST00000266497.5:c.1132C>T	p.Arg378Ter	p.R378*	ENST00000266497		378	Cga/Tga																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18793439	18793439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	140	602	0	ENST00000266497.5:c.4136G>T	p.Arg1379Met	p.R1379M	ENST00000266497		1379	aGg/aTg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25380289	25380289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	155	533	0	ENST00000256078.4:c.169G>A	p.Asp57Asn	p.D57N	ENST00000256078	NM_033360.2	57	Gac/Aac																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46245811	46245811	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	240	629	0	ENST00000334344.6:c.3905C>A	p.Ser1302Ter	p.S1302*	ENST00000334344	NM_152641.2	1302	tCa/tAa																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49416133	49416133	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	194	353	1	ENST00000301067.7:c.16342C>T	p.Arg5448Ter	p.R5448*	ENST00000301067	NM_003482.3	5448	Cga/Tga																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49416466	49416466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	48	520	0	ENST00000301067.7:c.16245G>T	p.Lys5415Asn	p.K5415N	ENST00000301067	NM_003482.3	5415	aaG/aaT																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49422861	49422861	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	104	484	0	ENST00000301067.7:c.14234C>A	p.Pro4745His	p.P4745H	ENST00000301067	NM_003482.3	4745	cCt/cAt																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49427702	49427702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	211	521	2	ENST00000301067.7:c.10786C>T	p.Arg3596Trp	p.R3596W	ENST00000301067	NM_003482.3	3596	Cgg/Tgg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49431493	49431493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	220	508	2	ENST00000301067.7:c.9646G>A	p.Glu3216Lys	p.E3216K	ENST00000301067	NM_003482.3	3216	Gag/Aag																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49443500	49443500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	182	389	5	ENST00000301067.7:c.3871C>T	p.Arg1291Trp	p.R1291W	ENST00000301067	NM_003482.3	1291	Cgg/Tgg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49445755	49445755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1347	270	965	0	ENST00000301067.7:c.1711C>T	p.Arg571Cys	p.R571C	ENST00000301067	NM_003482.3	571	Cgc/Tgc																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57859706	57859706	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	240	618	0	ENST00000228682.2:c.760C>T	p.His254Tyr	p.H254Y	ENST00000228682	NM_005269.2	254	Cac/Tac																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57861246	57861246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	247	628	0	ENST00000228682.2:c.1043G>A	p.Arg348Gln	p.R348Q	ENST00000228682	NM_005269.2	348	cGa/cAa																																													NEWRECORD																																		
PTPN11	5781	MSKCC	GRCh37	12	112888313	112888313	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	96	422	0	ENST00000351677.2:c.329A>G	p.Glu110Gly	p.E110G	ENST00000351677	NM_002834.3	110	gAa/gGa																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115120675	115120675	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	218	594	1	ENST00000257566.3:c.331G>T	p.Glu111Ter	p.E111*	ENST00000257566	NM_016569.3	111	Gaa/Taa																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133249847	133249847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	184	479	1	ENST00000320574.5:c.1376C>T	p.Ser459Phe	p.S459F	ENST00000320574	NM_006231.2	459	tCt/tTt																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133263897	133263897	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	71	207	0	ENST00000320574.5:c.5C>A	p.Ser2Tyr	p.S2Y	ENST00000320574	NM_006231.2	2	tCt/tAt																																													NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28597488	28597488	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	83	456	0	ENST00000241453.7:c.2417C>T	p.Ser806Leu	p.S806L	ENST00000241453	NM_004119.2	806	tCg/tTg																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28919631	28919631	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200840674		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	191	618	0	ENST00000282397.4:c.2306C>T	p.Ala769Val	p.A769V	ENST00000282397	NM_002019.4	769	gCg/gTg																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28931772	28931772	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	242	607	1	ENST00000282397.4:c.2167G>T	p.Glu723Ter	p.E723*	ENST00000282397	NM_002019.4	723	Gaa/Taa																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	29008201	29008201	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	66	531	0	ENST00000282397.4:c.670C>T	p.Arg224Ter	p.R224*	ENST00000282397	NM_002019.4	224	Cga/Tga																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32910849	32910849	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	70	833	0	ENST00000380152.3:c.2357C>A	p.Ser786Tyr	p.S786Y	ENST00000380152		786	tCt/tAt																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32912067	32912067	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	285	867	0	ENST00000380152.3:c.3575T>G	p.Phe1192Cys	p.F1192C	ENST00000380152		1192	tTt/tGt																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32913692	32913692	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786202543		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	345	868	1	ENST00000380152.3:c.5200G>A	p.Glu1734Lys	p.E1734K	ENST00000380152		1734	Gaa/Aaa																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32931937	32931937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	265	585	0	ENST00000380152.3:c.7676C>A	p.Ser2559Tyr	p.S2559Y	ENST00000380152		2559	tCt/tAt																																													NEWRECORD																																		
FOXO1	2308	MSKCC	GRCh37	13	41134594	41134594	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1121	175	791	2	ENST00000379561.5:c.1034C>A	p.Ser345Tyr	p.S345Y	ENST00000379561	NM_002015.3	345	tCt/tAt																																													NEWRECORD																																		
FOXO1	2308	MSKCC	GRCh37	13	41134687	41134687	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760747458		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	255	703	0	ENST00000379561.5:c.941G>A	p.Arg314His	p.R314H	ENST00000379561	NM_002015.3	314	cGc/cAc																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48916801	48916801	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	83	481	1	ENST00000267163.4:c.331G>T	p.Asp111Tyr	p.D111Y	ENST00000267163	NM_000321.2	111	Gat/Tat																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73337719	73337719	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	119	502	0	ENST00000377767.4:c.1997T>G	p.Phe666Cys	p.F666C	ENST00000377767	NM_014953.3	666	tTt/tGt																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73347874	73347874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	85	561	0	ENST00000377767.4:c.1187G>A	p.Arg396Gln	p.R396Q	ENST00000377767	NM_014953.3	396	cGg/cAg																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110434953	110434953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	207	482	0	ENST00000375856.3:c.3448G>A	p.Glu1150Lys	p.E1150K	ENST00000375856	NM_003749.2	1150	Gag/Aag																																													NEWRECORD																																		
NFKBIA	4792	MSKCC	GRCh37	14	35871728	35871728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	291	696	1	ENST00000216797.5:c.778C>T	p.Arg260Cys	p.R260C	ENST00000216797	NM_020529.2	260	Cgc/Tgc																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38060812	38060812	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1329	140	836	0	ENST00000250448.2:c.1177C>A	p.His393Asn	p.H393N	ENST00000250448	NM_004496.3	393	Cac/Aac																																													NEWRECORD																																		
TSHR	7253	MSKCC	GRCh37	14	81609352	81609352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	216	606	0	ENST00000298171.2:c.950C>T	p.Ala317Val	p.A317V	ENST00000298171	NM_000369.2	317	gCc/gTc																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95560252	95560252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	68	379	0	ENST00000343455.3:c.5337G>T	p.Lys1779Asn	p.K1779N	ENST00000343455	NM_177438.2	1779	aaG/aaT																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95569775	95569775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	169	542	0	ENST00000343455.3:c.3958G>A	p.Asp1320Asn	p.D1320N	ENST00000343455	NM_177438.2	1320	Gac/Aac																																													NEWRECORD																																		
GREM1	26585	MSKCC	GRCh37	15	33023435	33023435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1196	229	855	2	ENST00000300177.4:c.544G>A	p.Asp182Asn	p.D182N	ENST00000300177	NM_001191322.1	182	Gat/Aat																																													NEWRECORD																																		
RAD51	5888	MSKCC	GRCh37	15	41021734	41021734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	197	498	2	ENST00000267868.3:c.676G>A	p.Ala226Thr	p.A226T	ENST00000267868	NM_002875.4	226	Gcc/Acc																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42003283	42003283	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1274	126	885	1	ENST00000219905.7:c.2820G>T	p.Lys940Asn	p.K940N	ENST00000219905	NM_001164273.1	940	aaG/aaT																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42040903	42040903	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	294	687	2	ENST00000219905.7:c.5281C>T	p.Arg1761Ter	p.R1761*	ENST00000219905	NM_001164273.1	1761	Cga/Tga																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42059447	42059447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	253	736	0	ENST00000219905.7:c.9167C>T	p.Ser3056Leu	p.S3056L	ENST00000219905	NM_001164273.1	3056	tCg/tTg																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67457701	67457701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	205	460	0	ENST00000327367.4:c.511G>A	p.Glu171Lys	p.E171K	ENST00000327367	NM_005902.3	171	Gag/Aag																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88690584	88690584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	68	434	1	ENST00000360948.2:c.446C>T	p.Thr149Met	p.T149M	ENST00000360948	NM_001012338.2	149	aCg/aTg																																													NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91292623	91292623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	163	371	0	ENST00000355112.3:c.125C>A	p.Ser42Tyr	p.S42Y	ENST00000355112	NM_000057.2	42	tCt/tAt																																													NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91292818	91292818	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	223	631	0	ENST00000355112.3:c.320T>C	p.Leu107Ser	p.L107S	ENST00000355112	NM_000057.2	107	tTa/tCa																																													NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91298102	91298102	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	261	542	1	ENST00000355112.3:c.1021C>A	p.Leu341Ile	p.L341I	ENST00000355112	NM_000057.2	341	Ctt/Att																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2108831	2108831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	248	544	0	ENST00000219476.3:c.932C>A	p.Ser311Tyr	p.S311Y	ENST00000219476	NM_000548.3	311	tCt/tAt																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2126586	2126586	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	182	429	0	ENST00000219476.3:c.2837G>T	p.Ser946Ile	p.S946I	ENST00000219476	NM_000548.3	946	aGt/aTt																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3781375	3781375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	174	491	1	ENST00000262367.5:c.4990C>T	p.Arg1664Cys	p.R1664C	ENST00000262367	NM_004380.2	1664	Cgc/Tgc																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3789666	3789666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	165	633	0	ENST00000262367.5:c.4193C>T	p.Ala1398Val	p.A1398V	ENST00000262367	NM_004380.2	1398	gCt/gTt																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3808917	3808917	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	98	521	1	ENST00000262367.5:c.3307C>T	p.Arg1103Ter	p.R1103*	ENST00000262367	NM_004380.2	1103	Cga/Tga																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3820617	3820617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	104	437	0	ENST00000262367.5:c.2834C>T	p.Ser945Leu	p.S945L	ENST00000262367	NM_004380.2	945	tCg/tTg																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3842041	3842041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	243	584	1	ENST00000262367.5:c.1271G>A	p.Arg424Gln	p.R424Q	ENST00000262367	NM_004380.2	424	cGa/cAa																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9857818	9857818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	82	639	0	ENST00000330684.3:c.3583G>T	p.Asp1195Tyr	p.D1195Y	ENST00000330684	NM_001134407.1	1195	Gac/Tac																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9984909	9984909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	111	658	0	ENST00000330684.3:c.1056G>T	p.Glu352Asp	p.E352D	ENST00000330684	NM_001134407.1	352	gaG/gaT																																													NEWRECORD																																		
ERCC4	2072	MSKCC	GRCh37	16	14029408	14029408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	166	576	0	ENST00000311895.7:c.1619C>T	p.Ser540Leu	p.S540L	ENST00000311895	NM_005236.2	540	tCg/tTg																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23646795	23646795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	282	754	0	ENST00000261584.4:c.1072C>T	p.Pro358Ser	p.P358S	ENST00000261584	NM_024675.3	358	Ccc/Tcc																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23649216	23649216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	224	568	1	ENST00000261584.4:c.166G>T	p.Asp56Tyr	p.D56Y	ENST00000261584	NM_024675.3	56	Gat/Tat																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72830136	72830136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	257	743	0	ENST00000268489.5:c.6445C>T	p.Arg2149Cys	p.R2149C	ENST00000268489	NM_006885.3	2149	Cgc/Tgc																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72993828	72993828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	41	597	1	ENST00000268489.5:c.217G>A	p.Glu73Lys	p.E73K	ENST00000268489	NM_006885.3	73	Gag/Aag																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89347338	89347338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	174	805	1	ENST00000301030.4:c.5612C>T	p.Ala1871Val	p.A1871V	ENST00000301030	NM_001256183.1	1871	gCc/gTc																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89838216	89838216	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17232973		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	260	437	0	ENST00000389301.3:c.2021C>T	p.Ser674Leu	p.S674L	ENST00000389301	NM_000135.2	674	tCg/tTg																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89845228	89845228	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	234	657	0	ENST00000389301.3:c.1807T>A	p.Phe603Ile	p.F603I	ENST00000389301	NM_000135.2	603	Ttt/Att																																													NEWRECORD																																		
AURKB	9212	MSKCC	GRCh37	17	8109897	8109897	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	223	469	0	ENST00000585124.1:c.598G>T	p.Asp200Tyr	p.D200Y	ENST00000585124	NM_004217.3	200	Gac/Tac																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	11998926	11998926	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	45	551	0	ENST00000353533.5:c.428A>C	p.Lys143Thr	p.K143T	ENST00000353533	NM_003010.3	143	aAa/aCa																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15978955	15978955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	232	592	2	ENST00000268712.3:c.3563C>T	p.Ser1188Leu	p.S1188L	ENST00000268712	NM_006311.3	1188	tCg/tTg																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16049815	16049815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	143	598	1	ENST00000268712.3:c.957G>T	p.Glu319Asp	p.E319D	ENST00000268712	NM_006311.3	319	gaG/gaT																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17131220	17131220	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	256	562	0	ENST00000285071.4:c.232A>T	p.Lys78Ter	p.K78*	ENST00000285071	NM_144997.5	78	Aag/Tag																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29546065	29546065	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	194	546	0	ENST00000358273.4:c.1570G>T	p.Glu524Ter	p.E524*	ENST00000358273	NM_001042492.2	524	Gaa/Taa																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29585374	29585374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	34	508	0	ENST00000358273.4:c.4186C>T	p.Arg1396Cys	p.R1396C	ENST00000358273	NM_001042492.2	1396	Cgt/Tgt																																													NEWRECORD																																		
RAD51D	5892	MSKCC	GRCh37	17	33430306	33430306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	119	606	0	ENST00000335858.7:c.369G>T	p.Lys123Asn	p.K123N	ENST00000335858	NM_133629.2	123	aaG/aaT																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37873608	37873608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	213	573	0	ENST00000269571.5:c.1773G>T	p.Lys591Asn	p.K591N	ENST00000269571		591	aaG/aaT																																													NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40362238	40362238	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1118	107	753	0	ENST00000293328.3:c.1857C>A	p.Phe619Leu	p.F619L	ENST00000293328	NM_012448.3	619	ttC/ttA																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41243673	41243673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	109	657	3	ENST00000357654.3:c.3875C>A	p.Ser1292Tyr	p.S1292Y	ENST00000357654	NM_007294.3	1292	tCt/tAt																																													NEWRECORD																																		
RAD51C	5889	MSKCC	GRCh37	17	56780625	56780625	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140804406		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	222	538	1	ENST00000337432.4:c.640C>T	p.Arg214Cys	p.R214C	ENST00000337432	NM_058216.2	214	Cgt/Tgt																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59858253	59858253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	110	639	2	ENST00000259008.2:c.1742G>A	p.Arg581Gln	p.R581Q	ENST00000259008	NM_032043.2	581	cGa/cAa																																													NEWRECORD																																		
YES1	7525	MSKCC	GRCh37	18	745986	745986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	95	467	0	ENST00000314574.4:c.536G>A	p.Arg179Gln	p.R179Q	ENST00000314574	NM_005433.3	179	cGa/cAa																																													NEWRECORD																																		
TCF3	6929	MSKCC	GRCh37	19	1625652	1625652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	242	543	0	ENST00000344749.5:c.422C>T	p.Ser141Leu	p.S141L	ENST00000344749	NM_001136139.2	141	tCg/tTg																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7184419	7184419	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	246	529	0	ENST00000302850.5:c.882G>T	p.Lys294Asn	p.K294N	ENST00000302850	NM_000208.2	294	aaG/aaT																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10260146	10260146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	109	576	1	ENST00000340748.4:c.2521G>A	p.Glu841Lys	p.E841K	ENST00000340748		841	Gaa/Aaa																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10273405	10273405	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200601847		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	187	527	0	ENST00000340748.4:c.898G>A	p.Glu300Lys	p.E300K	ENST00000340748		300	Gaa/Aaa																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10597416	10597416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	276	593	0	ENST00000171111.5:c.1787G>A	p.Arg596Gln	p.R596Q	ENST00000171111	NM_203500.1	596	cGa/cAa																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15278077	15278077	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	211	590	0	ENST00000263388.2:c.5345T>C	p.Val1782Ala	p.V1782A	ENST00000263388	NM_000435.2	1782	gTc/gCc																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15299124	15299124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	223	514	0	ENST00000263388.2:c.1414G>A	p.Glu472Lys	p.E472K	ENST00000263388	NM_000435.2	472	Gag/Aag																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15299856	15299856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	69	536	1	ENST00000263388.2:c.1322G>A	p.Arg441Gln	p.R441Q	ENST00000263388	NM_000435.2	441	cGa/cAa																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15299883	15299883	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	192	553	0	ENST00000263388.2:c.1295T>C	p.Val432Ala	p.V432A	ENST00000263388	NM_000435.2	432	gTc/gCc																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15302858	15302858	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375682932		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	72	465	0	ENST00000263388.2:c.592G>A	p.Ala198Thr	p.A198T	ENST00000263388	NM_000435.2	198	Gcg/Acg																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15349220	15349220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	163	535	0	ENST00000263377.2:c.4057C>A	p.Leu1353Ile	p.L1353I	ENST00000263377	NM_058243.2	1353	Cta/Ata																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17948791	17948791	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	225	558	0	ENST00000458235.1:c.1651A>G	p.Thr551Ala	p.T551A	ENST00000458235	NM_000215.3	551	Aca/Gca																																													NEWRECORD																																		
CEBPA	1050	MSKCC	GRCh37	19	33792485	33792485	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	34	360	0	ENST00000498907.2:c.836A>G	p.Asp279Gly	p.D279G	ENST00000498907	NM_004364.3	279	gAc/gGc																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41765576	41765576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	205	588	0	ENST00000301178.4:c.2452G>A	p.Glu818Lys	p.E818K	ENST00000301178	NM_021913.4	818	Gaa/Aaa																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42794949	42794949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	129	319	0	ENST00000575354.2:c.2029C>T	p.Arg677Trp	p.R677W	ENST00000575354	NM_015125.3	677	Cgg/Tgg																																													NEWRECORD																																		
ERCC2	2068	MSKCC	GRCh37	19	45855871	45855871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	213	496	1	ENST00000391945.4:c.1939C>T	p.Arg647Cys	p.R647C	ENST00000391945	NM_000400.3	647	Cgt/Tgt																																													NEWRECORD																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52714742	52714742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	136	301	0	ENST00000322088.6:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000322088	NM_014225.5	167	cGa/cAa																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9546575	9546575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	75	554	0	ENST00000353224.5:c.1447C>T	p.Arg483Trp	p.R483W	ENST00000353224	NM_177990.2	483	Cgg/Tgg																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9546678	9546678	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	82	499	0	ENST00000353224.5:c.1344C>A	p.Tyr448Ter	p.Y448*	ENST00000353224	NM_177990.2	448	taC/taA																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31019156	31019156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	287	620	0	ENST00000375687.4:c.751G>T	p.Asp251Tyr	p.D251Y	ENST00000375687	NM_015338.5	251	Gat/Tat																																													NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31379488	31379488	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	75	556	0	ENST00000328111.2:c.895C>T	p.Arg299Ter	p.R299*	ENST00000328111	NM_006892.3	299	Cga/Tga																																													NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31387102	31387102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	189	486	0	ENST00000328111.2:c.1727G>A	p.Arg576Gln	p.R576Q	ENST00000328111	NM_006892.3	576	cGa/cAa																																													NEWRECORD																																		
TOP1	7150	MSKCC	GRCh37	20	39706272	39706272	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	135	406	0	ENST00000361337.2:c.330C>A	p.Phe110Leu	p.F110L	ENST00000361337	NM_003286.2	110	ttC/ttA																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41400170	41400170	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	280	468	0	ENST00000373198.4:c.589C>T	p.Arg197Ter	p.R197*	ENST00000373198	NM_133170.3	197	Cga/Tga																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36164712	36164712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	44	543	0	ENST00000300305.3:c.1163C>T	p.Ser388Leu	p.S388L	ENST00000300305		388	tCg/tTg																																													NEWRECORD																																		
TMPRSS2	7113	MSKCC	GRCh37	21	42879912	42879912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	56	146	1	ENST00000398585.3:c.20G>A	p.Gly7Glu	p.G7E	ENST00000398585	NM_001135099.1	7	gGa/gAa																																													NEWRECORD																																		
SMARCB1	6598	MSKCC	GRCh37	22	24129431	24129431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	124	331	0	ENST00000263121.7:c.75C>A	p.Phe25Leu	p.F25L	ENST00000263121	NM_003073.3	25	ttC/ttA																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41537106	41537106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	231	506	0	ENST00000263253.7:c.1933G>A	p.Glu645Lys	p.E645K	ENST00000263253	NM_001429.3	645	Gaa/Aaa																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41568574	41568574	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	273	654	0	ENST00000263253.7:c.4524C>A	p.Phe1508Leu	p.F1508L	ENST00000263253	NM_001429.3	1508	ttC/ttA																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41572405	41572405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	158	641	0	ENST00000263253.7:c.4934G>A	p.Arg1645Gln	p.R1645Q	ENST00000263253	NM_001429.3	1645	cGa/cAa																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39932677	39932677	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1255	542	919	0	ENST00000378444.4:c.1922C>A	p.Ser641Tyr	p.S641Y	ENST00000378444	NM_001123385.1	641	tCt/tAt																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39933587	39933587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			959	252	614	1	ENST00000378444.4:c.1012C>T	p.Arg338Trp	p.R338W	ENST00000378444	NM_001123385.1	338	Cgg/Tgg																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44941837	44941837	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1253	108	690	1	ENST00000377967.4:c.3161G>T	p.Arg1054Ile	p.R1054I	ENST00000377967	NM_021140.2	1054	aGa/aTa																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44969370	44969370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	224	740	3	ENST00000377967.4:c.4052G>A	p.Arg1351Gln	p.R1351Q	ENST00000377967	NM_021140.2	1351	cGa/cAa																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47006767	47006767	+	5_prime_UTR_variant	5'UTR	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	294	594	0	ENST00000329236.7:c.-114G>A		p.*38*	ENST00000329236	NM_001204466.1																																															NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47034435	47034435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	380	598	2	ENST00000329236.7:c.289G>A	p.Ala97Thr	p.A97T	ENST00000329236	NM_001204466.1	97	Gcc/Acc																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47041361	47041361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	367	551	0	ENST00000329236.7:c.1471G>A	p.Val491Ile	p.V491I	ENST00000329236	NM_001204466.1	491	Gtc/Atc																																													NEWRECORD																																		
ARAF	369	MSKCC	GRCh37	X	47422655	47422655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	367	695	1	ENST00000377045.4:c.127G>A	p.Asp43Asn	p.D43N	ENST00000377045	NM_001654.4	43	Gac/Aac																																													NEWRECORD																																		
ARAF	369	MSKCC	GRCh37	X	47422716	47422716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	295	541	0	ENST00000377045.4:c.188G>A	p.Arg63Gln	p.R63Q	ENST00000377045	NM_001654.4	63	cGa/cAa																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63410948	63410948	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	295	650	2	ENST00000330258.3:c.2219C>A	p.Ser740Tyr	p.S740Y	ENST00000330258	NM_152424.3	740	tCt/tAt																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63412029	63412029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1343	225	1073	2	ENST00000330258.3:c.1138G>A	p.Glu380Lys	p.E380K	ENST00000330258	NM_152424.3	380	Gag/Aag																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66765686	66765686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	316	690	2	ENST00000374690.3:c.698C>T	p.Ser233Phe	p.S233F	ENST00000374690	NM_000044.3	233	tCt/tTt																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66766604	66766604	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	265	508	1	ENST00000374690.3:c.1616G>A	p.Arg539His	p.R539H	ENST00000374690	NM_000044.3	539	cGt/cAt																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70346198	70346198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1380	81	758	0	ENST00000374080.3:c.2549G>A	p.Arg850Gln	p.R850Q	ENST00000374080		850	cGg/cAg																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70347294	70347294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	72	539	2	ENST00000374080.3:c.2958G>T	p.Lys986Asn	p.K986N	ENST00000374080		986	aaG/aaT																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76814272	76814272	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	256	723	0	ENST00000373344.5:c.6372T>G	p.Ile2124Met	p.I2124M	ENST00000373344	NM_000489.3	2124	atT/atG																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76907681	76907681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1481	444	966	1	ENST00000373344.5:c.4480C>A	p.Gln1494Lys	p.Q1494K	ENST00000373344	NM_000489.3	1494	Caa/Aaa																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76937492	76937492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	275	613	0	ENST00000373344.5:c.3256G>A	p.Ala1086Thr	p.A1086T	ENST00000373344	NM_000489.3	1086	Gca/Aca																																													NEWRECORD																																		
BTK	695	MSKCC	GRCh37	X	100615122	100615122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1137	110	574	2	ENST00000308731.7:c.793C>T	p.Pro265Ser	p.P265S	ENST00000308731	NM_000061.2	265	Cct/Tct																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123191760	123191760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1390	117	829	1	ENST00000218089.9:c.1349G>A	p.Arg450Lys	p.R450K	ENST00000218089	NM_001042749.1	450	aGa/aAa																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38964913	38964913	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	127	360	0	ENST00000357387.3:c.1381A>C	p.Ile461Leu	p.I461L	ENST00000357387	NM_152756.3	461	Atc/Ctc																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68842656	68842657	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0012130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	257	716	0	ENST00000261769.5:c.597_598dup	p.Pro200HisfsTer16	p.P200Hfs*16	ENST00000261769	NM_004360.3	198	gac/gACac																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133235926	133235926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	113	389	1	ENST00000320574.5:c.3230G>A	p.Arg1077His	p.R1077H	ENST00000320574	NM_006231.2	1077	cGc/cAc																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89335023	89335023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	42	190	0	ENST00000301030.4:c.7855G>A	p.Val2619Met	p.V2619M	ENST00000301030	NM_001256183.1	2619	Gtg/Atg																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	12032514	12032514	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	17	317	0	ENST00000353533.5:c.950T>G	p.Leu317Arg	p.L317R	ENST00000353533	NM_003010.3	317	cTa/cGa																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57485403	57485403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	129	392	0	ENST00000371085.3:c.985G>A	p.Gly329Arg	p.G329R	ENST00000371085	NM_000516.4	329	Gga/Aga																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89653781	89653782	+	stop_gained,frameshift_variant,splice_region_variant	Nonsense_Mutation	INS	-	-	A			P-0010075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	24	410	0	ENST00000371953.3:c.80dup	p.Tyr27Ter	p.Y27*	ENST00000371953	NM_000314.4	27	tat/tAat																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0000562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	16	192	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0000562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			553	71	321	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0000562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	36	243	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																													NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105246482	105246482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			313	20	437	0	ENST00000349310.3:c.118G>A	p.Glu40Lys	p.E40K	ENST00000349310	NM_001014432.1	40	Gag/Aag																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			361	38	301	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11136980	11136980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	16	326	0	ENST00000344626.4:c.3173C>T	p.Ser1058Phe	p.S1058F	ENST00000344626	NM_003072.3	1058	tCc/tTc																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187521298	187521299	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			676	56	575	0	ENST00000441802.2:c.11856dupT	p.Gly3953TrpfsTer19	p.G3953Wfs*19	ENST00000441802	NM_005245.3	3952	-/T																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1131691025		P-0010078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	159	646	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																													NEWRECORD																																		
SPOP	8405	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	115	582	0	ENST00000347630.2:c.398T>G	p.Phe133Cys	p.F133C	ENST00000347630	NM_001007230.1	133	tTc/tGc																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198257081	198257081	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	54	551	0	ENST00000335508.6:c.3861C>G	p.Ile1287Met	p.I1287M	ENST00000335508	NM_012433.2	1287	atC/atG																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31021546	31021560	+	inframe_deletion	In_Frame_Del	DEL	GGATCAGGAACCCAA	GGATCAGGAACCCAA	-			P-0010078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	112	390	1	ENST00000375687.4:c.1552_1566del	p.Glu518_Gln522del	p.E518_Q522del	ENST00000375687	NM_015338.5	515	gtGGATCAGGAACCCAAg/gtg																																													NEWRECORD																																		
MDM4	4194	MSKCC	GRCh37	1	204515962	204515963	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	94	607	0	ENST00000367182.3:c.861dup	p.Lys288Ter	p.K288*	ENST00000367182	NM_001278516.1	287	tct/tcTt																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061516	38061517	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGC			P-0009819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	41	238	0	ENST00000250448.2:c.470_472dup	p.Gly157dup	p.G157dup	ENST00000250448	NM_004496.3	157	gac/gGCGac																																													NEWRECORD																																		
NEGR1	257194	MSKCC	GRCh37	1	71873229	71873229	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	29	798	0	ENST00000357731.5:c.965T>G	p.Ile322Ser	p.I322S	ENST00000357731	NM_173808.2	322	aTt/aGt																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061229	38061230	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0008356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	56	439	0	ENST00000250448.2:c.759_760insAG	p.Phe254SerfsTer68	p.F254Sfs*68	ENST00000250448	NM_004496.3	253	-/AG																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	206	342	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68857311	68857312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	161	306	0	ENST00000261769.5:c.1947dup	p.Ile650TyrfsTer13	p.I650Yfs*13	ENST00000261769	NM_004360.3	649	tct/tcTt																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36206722	36206722	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	198	621	0	ENST00000300305.3:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000300305		264	Cag/Tag																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061238	38061239	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGAGTCCGGGTGCAGCGTCCAGTA			P-0014829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	162	634	0	ENST00000250448.2:c.727_750dup	p.Tyr243_Ser250dup	p.Y243_S250dup	ENST00000250448	NM_004496.3	243	-/TACTGGACGCTGCACCCGGACTCC																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115117425	115117450	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGGTATTTGTGCATGGAGTTCAA	GGCTGGTATTTGTGCATGGAGTTCAA	C			P-0014829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	123	349	0	ENST00000257566.3:c.724_749delinsG	p.Leu242AlafsTer6	p.L242Afs*6	ENST00000257566	NM_016569.3	242	TTGAACTCCATGCACAAATACCAGCCc/Gc																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	63	273	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																													NEWRECORD																																		
ERCC3	2071	MSKCC	GRCh37	2	128051218	128051218	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	239	386	0	ENST00000285398.2:c.105G>T	p.Gln35His	p.Q35H	ENST00000285398	NM_000122.1	35	caG/caT																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89498506	89498506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	208	294	2	ENST00000336596.2:c.2478G>T	p.Trp826Cys	p.W826C	ENST00000336596	NM_005233.5	826	tgG/tgT																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66201792	66201792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	64	291	0	ENST00000273854.3:c.2710C>T	p.Pro904Ser	p.P904S	ENST00000273854	NM_004439.5	904	Cct/Tct																																													NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35874565	35874565	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	476	409	0	ENST00000303115.3:c.721A>T	p.Ile241Phe	p.I241F	ENST00000303115	NM_002185.3	241	Atc/Ttc																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30672882	30672882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	128	550	0	ENST00000376406.3:c.4078G>A	p.Val1360Met	p.V1360M	ENST00000376406	NM_014641.2	1360	Gtg/Atg																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8460511	8460511	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	172	328	0	ENST00000356435.5:c.3775C>G	p.Pro1259Ala	p.P1259A	ENST00000356435		1259	Cca/Gca																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974799	21974799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	54	96	0	ENST00000304494.5:c.28G>T	p.Glu10Ter	p.E10*	ENST00000304494	NM_000077.4	10	Gag/Tag																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139412378	139412378	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	68	127	0	ENST00000277541.6:c.1267T>G	p.Cys423Gly	p.C423G	ENST00000277541	NM_017617.3	423	Tgc/Ggc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8100349	8100349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	92	379	0	ENST00000346208.3:c.323C>T	p.Thr108Ile	p.T108I	ENST00000346208		108	aCc/aTc																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15975518	15975518	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	142	338	0	ENST00000268712.3:c.3836G>T	p.Arg1279Met	p.R1279M	ENST00000268712	NM_006311.3	1279	aGg/aTg																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29667602	29667602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	225	333	0	ENST00000358273.4:c.7001G>A	p.Gly2334Asp	p.G2334D	ENST00000358273	NM_001042492.2	2334	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578192	7578193	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GGCACCACCACACTATGTCGAAAAGTGT			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	138	410	1	ENST00000269305.4:c.629_656dup	p.Tyr220HisfsTer5	p.Y220Hfs*5	ENST00000269305	NM_001126112.2	219	ccc/ccACACTTTTCGACATAGTGTGGTGGTGCCc																																													NEWRECORD																																		
DAXX	1616	MSKCC	GRCh37	6	33287185	33287185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	378	368	0	ENST00000374542.5:c.1912C>T	p.Gln638Ter	p.Q638*	ENST00000374542	NM_001141970.1	638	Caa/Taa																																													NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215593503	215593503	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	129	510	0	ENST00000260947.4:c.2231A>G	p.Asn744Ser	p.N744S	ENST00000260947	NM_000465.2	744	aAt/aGt																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32929048	32929048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1605	394	956	0	ENST00000380152.3:c.7058G>T	p.Gly2353Val	p.G2353V	ENST00000380152		2353	gGt/gTt																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2098617	2098617	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0006494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	668	611	0	ENST00000219476.3:c.1A>G	p.Met1?	p.M1?	ENST00000219476	NM_000548.3	1	Atg/Gtg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106506	27106507	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	425	782	0	ENST00000324856.7:c.6121dup	p.Val2041GlyfsTer58	p.V2041Gfs*58	ENST00000324856	NM_006015.4	2039	-/G																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	200	423	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	356	533	1	ENST00000326873.7:c.842dup	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggCc																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66201813	66201813	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	167	418	0	ENST00000273854.3:c.2689C>A	p.Leu897Met	p.L897M	ENST00000273854	NM_004439.5	897	Ctg/Atg																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86627259	86627259	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	201	531	0	ENST00000274376.6:c.634A>T	p.Arg212Trp	p.R212W	ENST00000274376	NM_002890.2	212	Agg/Tgg																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106508577	106508577	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	128	173	0	ENST00000359195.3:c.571C>A	p.Arg191Ser	p.R191S	ENST00000359195	NM_002649.2	191	Cgc/Agc																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453124	140453124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	213	426	0	ENST00000288602.6:c.1811G>T	p.Trp604Leu	p.W604L	ENST00000288602	NM_004333.4	604	tGg/tTg																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43597994	43597994	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	333	567	0	ENST00000355710.3:c.542C>A	p.Pro181His	p.P181H	ENST00000355710	NM_020975.4	181	cCc/cAc																																													NEWRECORD																																		
IGF2	3481	MSKCC	GRCh37	11	2156723	2156723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	380	596	0	ENST00000434045.2:c.199G>A	p.Val67Met	p.V67M	ENST00000434045	NM_001127598.1	67	Gtg/Atg																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860084	57860084	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1205	522	791	0	ENST00000228682.2:c.824G>T	p.Cys275Phe	p.C275F	ENST00000228682	NM_005269.2	275	tGc/tTc																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115112635	115112635	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	163	241	0	ENST00000257566.3:c.1105T>A	p.Cys369Ser	p.C369S	ENST00000257566	NM_016569.3	369	Tgt/Agt																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9857733	9857733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	315	592	0	ENST00000330684.3:c.3668C>A	p.Thr1223Asn	p.T1223N	ENST00000330684	NM_001134407.1	1223	aCc/aAc																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11123701	11123701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	330	482	0	ENST00000344626.4:c.2351G>A	p.Gly784Glu	p.G784E	ENST00000344626	NM_003072.3	784	gGg/gAg																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50906317	50906317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	335	590	2	ENST00000440232.2:c.978C>A	p.Phe326Leu	p.F326L	ENST00000440232	NM_002691.3	326	ttC/ttA																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41306557	41306557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	242	503	0	ENST00000373198.4:c.1102G>T	p.Gly368Trp	p.G368W	ENST00000373198	NM_133170.3	368	Ggg/Tgg																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39934060	39934060	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	389	340	0	ENST00000378444.4:c.539A>T	p.Asn180Ile	p.N180I	ENST00000378444	NM_001123385.1	180	aAc/aTc																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47034476	47034476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	447	348	1	ENST00000329236.7:c.330G>A	p.Trp110Ter	p.W110*	ENST00000329236	NM_001204466.1	110	tgG/tgA																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002751-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			100	11	532	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002751-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			94	12	470	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0001303-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			858	378	283	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																													NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215657167	215657167	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0001303-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			659	86	232	0	ENST00000260947.4:c.218A>G	p.Asn73Ser	p.N73S	ENST00000260947	NM_000465.2	73	aAt/aGt																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89259311	89259311	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001303-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			901	116	449	0	ENST00000336596.2:c.455T>C	p.Phe152Ser	p.F152S	ENST00000336596	NM_005233.5	152	tTc/tCc																																													NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1806176	1806176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001303-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1080	165	538	0	ENST00000260795.2:c.1195C>T	p.Arg399Cys	p.R399C	ENST00000260795		399	Cgc/Tgc																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55241617	55241617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001303-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			911	437	332	0	ENST00000275493.2:c.2065G>A	p.Val689Met	p.V689M	ENST00000275493	NM_005228.3	689	Gtg/Atg																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11144498	11144498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001303-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			607	120	370	0	ENST00000344626.4:c.3830C>T	p.Pro1277Leu	p.P1277L	ENST00000344626	NM_003072.3	1277	cCg/cTg																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66863213	66863213	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001303-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1244	224	536	0	ENST00000374690.3:c.1732G>T	p.Gly578Ter	p.G578*	ENST00000374690	NM_000044.3	578	Gga/Tga																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76938397	76938397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001303-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			2075	163	754	0	ENST00000373344.5:c.2351C>T	p.Ser784Phe	p.S784F	ENST00000373344	NM_000489.3	784	tCt/tTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579577	7579580	+	frameshift_variant	Frame_Shift_Ins	INS	GACG	GACG	ACGAC			P-0001303-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	166	311	0	ENST00000269305.4:c.107_110delinsGTCGT	p.Pro36ArgfsTer7	p.P36Rfs*7	ENST00000269305	NM_001126112.2	36	cCGTCc/cGTCGTc																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249468	153249468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011603-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			303	145	473	0	ENST00000281708.4:c.1310G>T	p.Gly437Val	p.G437V	ENST00000281708	NM_033632.3	437	gGa/gTa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175213	112175213	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0011603-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			215	43	208	0	ENST00000257430.4:c.3922A>T	p.Lys1308Ter	p.K1308*	ENST00000257430	NM_000038.5	1308	Aaa/Taa																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	94120794	94120794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011603-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	459	1142	2	ENST00000369303.4:c.257G>A	p.Arg86Gln	p.R86Q	ENST00000369303	NM_004440.3	86	cGg/cAg																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2210798	2210798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011603-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			381	88	408	0	ENST00000398665.3:c.1295C>T	p.Ala432Val	p.A432V	ENST00000398665	NM_032482.2	432	gCa/gTa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112103076	112103077	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGAAAGA			P-0011603-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			218	83	323	0	ENST00000257430.4:c.415_422dup	p.Ser142LysfsTer31	p.S142Kfs*31	ENST00000257430	NM_000038.5	137	-/GAGAAAGA																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0013708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	128	409	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																													NEWRECORD																																		
CSF1R	1436	MSKCC	GRCh37	5	149465954	149465954	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1202	459	759	0	ENST00000286301.3:c.37A>G	p.Thr13Ala	p.T13A	ENST00000286301	NM_005211.3	13	Aca/Gca																																													NEWRECORD																																		
CDKN1B	1027	MSKCC	GRCh37	12	12871807	12871807	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	45	343	0	ENST00000228872.4:c.524C>A	p.Ser175Ter	p.S175*	ENST00000228872	NM_004064.3	175	tCa/tAa																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18443797	18443797	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	67	524	0	ENST00000266497.5:c.770A>G	p.Glu257Gly	p.E257G	ENST00000266497		257	gAa/gGa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0013366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	233	626	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																													NEWRECORD																																		
ERG	2078	MSKCC	GRCh37	21	39755585	39755585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	230	671	0	ENST00000288319.7:c.1180G>A	p.Gly394Arg	p.G394R	ENST00000288319	NM_182918.3	394	Ggg/Agg																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38060912	38060912	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	1285	452	0	ENST00000250448.2:c.1077delC	p.Ile360Ter	p.I360*	ENST00000250448	NM_004496.3	359	ccC/cc																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139396762	139396764	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0013366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1043	58	514	0	ENST00000277541.6:c.5344_5346del	p.Lys1782del	p.K1782del	ENST00000277541	NM_017617.3	1782	AAG/-																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	41961323	41961324	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1753	369	1017	0	ENST00000219905.7:c.232dup	p.Thr78AsnfsTer4	p.T78Nfs*4	ENST00000219905	NM_001164273.1	77	-/A																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0005286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	30	414	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0005286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	15	337	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																													NEWRECORD																																		
FOXO1	2308	MSKCC	GRCh37	13	41240106	41240106	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs34733279		P-0005286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	10	108	0	ENST00000379561.5:c.244G>A	p.Asp82Asn	p.D82N	ENST00000379561	NM_002015.3	82	Gac/Aac																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	268	314	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0010352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	263	379	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0010352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	153	255	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0010352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	89	224	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114920413	114920413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	685	793	1	ENST00000543371.1:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000543371	NM_001198531.1	452	Ggg/Agg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178938931	178938931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	225	166	0	ENST00000263967.3:c.2173G>A	p.Asp725Asn	p.D725N	ENST00000263967	NM_006218.2	725	Gat/Aat																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604785	48604786	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGACGA			P-0010352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	152	328	0	ENST00000342988.3:c.1610_1615dup	p.Asp537_Glu538dup	p.D537_E538dup	ENST00000342988	NM_005359.5	537	cta/ctAGACGAa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	457	531	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0012877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	355	790	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0012877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	168	392	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																													NEWRECORD																																		
ERCC2	2068	MSKCC	GRCh37	19	45856014	45856014	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751084702		P-0012877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	265	582	2	ENST00000391945.4:c.1892G>A	p.Arg631His	p.R631H	ENST00000391945	NM_000400.3	631	cGc/cAc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0012877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	344	1010	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																													NEWRECORD																																		
XPO1	7514	MSKCC	GRCh37	2	61720073	61720073	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	259	596	0	ENST00000401558.2:c.1361A>G	p.Tyr454Cys	p.Y454C	ENST00000401558	NM_003400.3	454	tAt/tGt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175696	112175696	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	224	496	0	ENST00000257430.4:c.4405C>T	p.Gln1469Ter	p.Q1469*	ENST00000257430	NM_000038.5	1469	Caa/Taa																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9943623	9943623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	247	478	0	ENST00000330684.3:c.1318G>A	p.Val440Ile	p.V440I	ENST00000330684	NM_001134407.1	440	Gtc/Atc																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411387	63411387	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	945	776	0	ENST00000330258.3:c.1780del	p.His594ThrfsTer59	p.H594Tfs*59	ENST00000330258	NM_152424.3	594	Cac/ac																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70117687	70117688	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	721	769	0	ENST00000245479.2:c.156dup	p.Phe53ValfsTer199	p.F53Vfs*199	ENST00000245479	NM_000346.3	52	acg/acGg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	77	262	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0012186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	169	472	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11123788	11123788	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	146	425	0	ENST00000344626.4:c.2438C>T	p.Ser813Leu	p.S813L	ENST00000344626	NM_003072.3	813	tCa/tTa																																													NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215645381	215645381	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	117	731	0	ENST00000260947.4:c.1217G>T	p.Arg406Leu	p.R406L	ENST00000260947	NM_000465.2	406	cGa/cTa																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78866524	78866544	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCAGAGGGAGGGAGTTTGAC	CCCAGAGGGAGGGAGTTTGAC	-			P-0012186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	48	439	0	ENST00000306801.3:c.2102_2122del		p.X701_splice	ENST00000306801	NM_020761.2	701																																														NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36206857	36206858	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTCC			P-0012186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	180	278	0	ENST00000300305.3:c.650_654dup	p.Leu219GlyfsTer20	p.L219Gfs*20	ENST00000300305		218	-/GGAGC																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112157615	112157615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	28	238	0	ENST00000257430.4:c.1335G>T	p.Gln445His	p.Q445H	ENST00000257430	NM_000038.5	445	caG/caT																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061202	38061203	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGGC			P-0003741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	40	165	0	ENST00000250448.2:c.782_786dup	p.Gln263AlafsTer60	p.Q263Afs*60	ENST00000250448	NM_004496.3	262	-/GCCGC																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	456	609	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	423	718	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																													NEWRECORD																																		
FYN	2534	MSKCC	GRCh37	6	112017578	112017578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	392	1028	0	ENST00000368678.4:c.935C>T	p.Ala312Val	p.A312V	ENST00000368678		312	gCg/gTg																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	286	615	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139402460	139402460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	332	781	2	ENST00000277541.6:c.3457C>T	p.Pro1153Ser	p.P1153S	ENST00000277541	NM_017617.3	1153	Ccc/Tcc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8097635	8097635	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	105	355	0	ENST00000346208.3:c.17A>G	p.Asp6Gly	p.D6G	ENST00000346208		6	gAc/gGc																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46211574	46211574	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	300	723	0	ENST00000334344.6:c.540C>A	p.Cys180Ter	p.C180*	ENST00000334344	NM_152641.2	180	tgC/tgA																																													NEWRECORD																																		
U2AF1	7307	MSKCC	GRCh37	21	44513292	44513292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	333	599	0	ENST00000291552.4:c.643G>A	p.Gly215Ser	p.G215S	ENST00000291552	NM_006758.2	215	Ggt/Agt																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46244679	46244680	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGTAGT			P-0013055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	348	818	0	ENST00000334344.6:c.2775_2781dup	p.Ile928ArgfsTer25	p.I928Rfs*25	ENST00000334344	NM_152641.2	925	agc/aGCGTAGTgc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175940	112175943	+	frameshift_variant	Frame_Shift_Del	DEL	AGAA	AGAA	-			P-0013055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	141	357	0	ENST00000257430.4:c.4652_4655del	p.Lys1551ArgfsTer13	p.K1551Rfs*13	ENST00000257430	NM_000038.5	1550	gAGAAa/ga																																													NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0014711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	53	536	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115115410	115115411	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	103	678	0	ENST00000257566.3:c.915dup	p.Thr306HisfsTer21	p.T306Hfs*21	ENST00000257566	NM_016569.3	305	-/C																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68844161	68844161	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	107	740	0	ENST00000261769.5:c.749T>A	p.Ile250Asn	p.I250N	ENST00000261769	NM_004360.3	250	aTc/aAc																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72831304	72831313	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCTGCTGC	CTCCTGCTGC	-			P-0014711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	50	397	0	ENST00000268489.5:c.5268_5277del	p.Gln1757CysfsTer7	p.Q1757Cfs*7	ENST00000268489	NM_006885.3	1756	ctGCAGCAGGAG/ct																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	11984669	11984670	+	splice_region_variant,intron_variant	Splice_Region	DEL	AC	AC	-			P-0014711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	58	399	0	ENST00000353533.5:c.219-3_219-2del		p.X73_splice	ENST00000353533	NM_003010.3	73																																														NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56492851	56492851	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	68	460	0	ENST00000407977.2:c.88C>G	p.Leu30Val	p.L30V	ENST00000407977		30	Ctg/Gtg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0014820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	39	711	1	ENST00000269305.4:c.376-2A>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																														NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89833629	89833629	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	66	277	0	ENST00000389301.3:c.2521A>G	p.Ile841Val	p.I841V	ENST00000389301	NM_000135.2	841	Att/Gtt																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38991074	38991074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	163	409	0	ENST00000357387.3:c.560G>A	p.Cys187Tyr	p.C187Y	ENST00000357387	NM_152756.3	187	tGc/tAc																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	152132814	152132815	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	123	602	0	ENST00000262189.6:c.57dup	p.Glu20ArgfsTer39	p.E20Rfs*39	ENST00000262189	NM_170606.2	19	-/C																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	248	462	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	425	415	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	598	505	0	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																													NEWRECORD																																		
TNFAIP3	7128	MSKCC	GRCh37	6	138196045	138196045	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	224	422	0	ENST00000237289.4:c.359T>G	p.Leu120Trp	p.L120W	ENST00000237289	NM_001270507.1	120	tTg/tGg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175817	112175826	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGCCTCGA	TGAGCCTCGA	-			P-0009645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	310	399	0	ENST00000257430.4:c.4532_4541del	p.Leu1511HisfsTer9	p.L1511Hfs*9	ENST00000257430	NM_000038.5	1509	cTGAGCCTCGAt/ct																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48573604	48573605	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	210	439	0	ENST00000342988.3:c.191dup	p.Asn64LysfsTer6	p.N64Kfs*6	ENST00000342988	NM_005359.5	63	aca/acAa																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68856093	68856093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	109	541	0	ENST00000261769.5:c.1901C>T	p.Ala634Val	p.A634V	ENST00000261769	NM_004360.3	634	gCg/gTg																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187542332	187542332	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0007129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	88	339	0	ENST00000441802.2:c.5408C>G	p.Ser1803Ter	p.S1803*	ENST00000441802	NM_005245.3	1803	tCa/tGa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578484	7578485	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	70	508	0	ENST00000269305.4:c.445dup	p.Ser149PhefsTer32	p.S149Ffs*32	ENST00000269305	NM_001126112.2	149	tcc/tTcc																																													NEWRECORD																																		
EZH2	2146	MSKCC	GRCh37	7	148507499	148507499	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	17	344	0	ENST00000320356.2:c.1955C>G	p.Ser652Cys	p.S652C	ENST00000320356	NM_004456.4	652	tCt/tGt																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3786758	3786758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	72	671	2	ENST00000262367.5:c.4453C>T	p.His1485Tyr	p.H1485Y	ENST00000262367	NM_004380.2	1485	Cat/Tat																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55153624	55153624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	73	573	0	ENST00000257290.5:c.2590C>T	p.Pro864Ser	p.P864S	ENST00000257290	NM_006206.4	864	Cct/Tct																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38966814	38966814	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	64	305	0	ENST00000357387.3:c.1228G>C	p.Glu410Gln	p.E410Q	ENST00000357387	NM_152756.3	410	Gaa/Caa																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32180964	32180964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	60	539	0	ENST00000375023.3:c.2386G>T	p.Gly796Cys	p.G796C	ENST00000375023	NM_004557.3	796	Ggc/Tgc																																													NEWRECORD																																		
ETV6	2120	MSKCC	GRCh37	12	11905397	11905397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	65	327	2	ENST00000396373.4:c.47C>T	p.Ser16Leu	p.S16L	ENST00000396373	NM_001987.4	16	tCa/tTa																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133759403	133759403	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	13	704	0	ENST00000318560.5:c.1726G>C	p.Glu576Gln	p.E576Q	ENST00000318560	NM_005157.4	576	Gag/Cag																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17952266	17952266	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	19	434	0	ENST00000458235.1:c.1074C>G	p.Phe358Leu	p.F358L	ENST00000458235	NM_000215.3	358	ttC/ttG																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0001826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1101	238	505	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0001826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			830	412	464	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151884400	151884400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1257	259	543	0	ENST00000262189.6:c.4955C>A	p.Ala1652Asp	p.A1652D	ENST00000262189	NM_170606.2	1652	gCc/gAc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174884	112174885	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			240	421	485	3	ENST00000257430.4:c.3596dup	p.Ser1200GlufsTer8	p.S1200Efs*8	ENST00000257430	NM_000038.5	1198	tca/tcAa																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49420288	49420288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	22	472	1	ENST00000301067.7:c.15461G>A	p.Arg5154Gln	p.R5154Q	ENST00000301067	NM_003482.3	5154	cGg/cAg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	80	404	1	ENST00000269305.4:c.481G>T	p.Ala161Ser	p.A161S	ENST00000269305	NM_001126112.2	161	Gcc/Tcc																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0005902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	13	244	0	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	11	381	0	ENST00000349496.5:c.97T>G	p.Ser33Ala	p.S33A	ENST00000349496	NM_001904.3	33	Tct/Gct																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061250	38061250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	178	485	0	ENST00000250448.2:c.739C>T	p.His247Tyr	p.H247Y	ENST00000250448	NM_004496.3	247	Cac/Tac																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916957	178916957	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	192	465	0	ENST00000263967.3:c.344G>C	p.Arg115Pro	p.R115P	ENST00000263967	NM_006218.2	115	cGa/cCa																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249013	55249014	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACC			P-0008487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	134	247	0	ENST00000275493.2:c.2312_2314dup	p.Asn771_Pro772insHis	p.N771_P772insH	ENST00000275493	NM_005228.3	771	aac/aACCac																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578098	7578176	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CCCCCCTACTGCTCACCTGGAGGGCCACTGACAACCACCCTTAACCCCTCCTCCCAGAGACCCCAGTTGCAAACCAGAC	CCCCCCTACTGCTCACCTGGAGGGCCACTGACAACCACCCTTAACCCCTCCTCCCAGAGACCCCAGTTGCAAACCAGAC	-			P-0008487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	142	168	0	ENST00000269305.4:c.672+1_672+79del		p.X224_splice	ENST00000269305	NM_001126112.2	224																																														NEWRECORD																																		
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765123636		P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	66	172	2	ENST00000369902.3:c.71dup	p.Ala25GlyfsTer23	p.A25Gfs*23	ENST00000369902	NM_016169.3	22	gcc/gCcc																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	191	352	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1100	333	462	1	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	232	285	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
IDH1	3417	MSKCC	GRCh37	2	209116254	209116254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	204	323	0	ENST00000345146.2:c.22G>A	p.Gly8Ser	p.G8S	ENST00000345146	NM_005896.2	8	Ggt/Agt																																													NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	172	379	2	ENST00000303115.3:c.361delA	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25523009	25523009	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	52	506	2	ENST00000264709.3:c.176delC	p.Pro59ArgfsTer13	p.P59Rfs*13	ENST00000264709	NM_175629.2	59	cCg/cg																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	256	497	4	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																													NEWRECORD																																		
PAX5	5079	MSKCC	GRCh37	9	36882082	36882082	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	143	461	0	ENST00000358127.4:c.931A>G	p.Thr311Ala	p.T311A	ENST00000358127	NM_001280556.1	311	Acc/Gcc																																													NEWRECORD																																		
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	168	435	1	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	254	627	6	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9543605	9543605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	181	450	1	ENST00000353224.5:c.1549G>A	p.Asp517Asn	p.D517N	ENST00000353224	NM_177990.2	517	Gat/Aat																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151859859	151859859	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	146	412	2	ENST00000262189.6:c.10803del	p.Lys3604ArgfsTer26	p.K3604Rfs*26	ENST00000262189	NM_170606.2	3601	aaA/aa																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72991721	72991721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	183	353	2	ENST00000268489.5:c.2324C>T	p.Ala775Val	p.A775V	ENST00000268489	NM_006885.3	775	gCg/gTg																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11313909	11313909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	173	361	0	ENST00000361445.4:c.827G>A	p.Ser276Asn	p.S276N	ENST00000361445	NM_004958.3	276	aGc/aAc																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16261338	16261338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	134	336	0	ENST00000375759.3:c.8603C>T	p.Ser2868Phe	p.S2868F	ENST00000375759	NM_015001.2	2868	tCc/tTc																																													NEWRECORD																																		
MDM4	4194	MSKCC	GRCh37	1	204507392	204507392	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1331	109	526	0	ENST00000367182.3:c.467C>A	p.Pro156His	p.P156H	ENST00000367182	NM_001278516.1	156	cCc/cAc																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	30143441	30143441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	43	143	0	ENST00000389048.3:c.85G>A	p.Ala29Thr	p.A29T	ENST00000389048	NM_004304.4	29	Gcg/Acg																																													NEWRECORD																																		
INHA	3623	MSKCC	GRCh37	2	220437262	220437262	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	199	586	0	ENST00000243786.2:c.166A>G	p.Arg56Gly	p.R56G	ENST00000243786	NM_002191.3	56	Agg/Ggg																																													NEWRECORD																																		
EIF4E	1977	MSKCC	GRCh37	4	99823069	99823069	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	155	319	0	ENST00000280892.6:c.143T>G	p.Val48Gly	p.V48G	ENST00000280892	NM_001130678.1	48	gTt/gGt																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187627773	187627773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200050180		P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	216	466	0	ENST00000441802.2:c.3209G>A	p.Arg1070Gln	p.R1070Q	ENST00000441802	NM_005245.3	1070	cGa/cAa																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86667976	86667976	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	212	473	0	ENST00000274376.6:c.1740A>C	p.Lys580Asn	p.K580N	ENST00000274376	NM_002890.2	580	aaA/aaC																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173767	112173767	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	173	365	0	ENST00000257430.4:c.2476T>A	p.Leu826Met	p.L826M	ENST00000257430	NM_000038.5	826	Ttg/Atg																																													NEWRECORD																																		
PIM1	5292	MSKCC	GRCh37	6	37139010	37139010	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	167	434	1	ENST00000373509.5:c.350T>C	p.Val117Ala	p.V117A	ENST00000373509	NM_002648.3	117	gTc/gCc																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8517873	8517873	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	199	403	0	ENST00000356435.5:c.1518C>A	p.Asp506Glu	p.D506E	ENST00000356435		506	gaC/gaA																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133761015	133761015	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	221	576	0	ENST00000318560.5:c.3338A>G	p.Asp1113Gly	p.D1113G	ENST00000318560	NM_005157.4	1113	gAc/gGc																																													NEWRECORD																																		
MRE11A	4361	MSKCC	GRCh37	11	94201025	94201025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	193	443	2	ENST00000323929.3:c.1052G>A	p.Arg351His	p.R351H	ENST00000323929	NM_005591.3	351	cGt/cAt																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88576213	88576213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	141	378	0	ENST00000360948.2:c.1460G>A	p.Gly487Asp	p.G487D	ENST00000360948	NM_001012338.2	487	gGc/gAc																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99459927	99459927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	220	452	0	ENST00000268035.6:c.2023G>A	p.Asp675Asn	p.D675N	ENST00000268035	NM_000875.3	675	Gac/Aac																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67116168	67116168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	331	544	1	ENST00000412916.2:c.452G>A	p.Arg151His	p.R151H	ENST00000412916		151	cGc/cAc																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72828653	72828653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	353	709	0	ENST00000268489.5:c.7928G>A	p.Arg2643His	p.R2643H	ENST00000268489	NM_006885.3	2643	cGt/cAt																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15968309	15968309	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	229	544	0	ENST00000268712.3:c.4976C>A	p.Pro1659His	p.P1659H	ENST00000268712	NM_006311.3	1659	cCt/cAt																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17124854	17124854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	169	402	0	ENST00000285071.4:c.868G>A	p.Ala290Thr	p.A290T	ENST00000285071	NM_144997.5	290	Gct/Act																																													NEWRECORD																																		
RAD51C	5889	MSKCC	GRCh37	17	56811555	56811555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	294	444	0	ENST00000337432.4:c.1103G>A	p.Arg368Gln	p.R368Q	ENST00000337432	NM_058216.2	368	cGg/cAg																																													NEWRECORD																																		
YES1	7525	MSKCC	GRCh37	18	736907	736907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1131	128	479	0	ENST00000314574.4:c.1192C>T	p.Arg398Trp	p.R398W	ENST00000314574	NM_005433.3	398	Cgg/Tgg																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7117225	7117225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	82	448	0	ENST00000302850.5:c.3991C>T	p.Arg1331Cys	p.R1331C	ENST00000302850	NM_000208.2	1331	Cgt/Tgt																																													NEWRECORD																																		
AKT2	208	MSKCC	GRCh37	19	40743929	40743929	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	201	486	1	ENST00000392038.2:c.778G>T	p.Val260Phe	p.V260F	ENST00000392038	NM_001626.4	260	Gtc/Ttc																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	115	400	0	ENST00000373198.4:c.3281C>T	p.Pro1094Leu	p.P1094L	ENST00000373198	NM_133170.3	1094	cCg/cTg																																													NEWRECORD																																		
SMARCB1	6598	MSKCC	GRCh37	22	24129428	24129428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	167	413	0	ENST00000263121.7:c.72G>T	p.Glu24Asp	p.E24D	ENST00000263121	NM_003073.3	24	gaG/gaT																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41572460	41572460	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	208	522	0	ENST00000263253.7:c.4989G>T	p.Gln1663His	p.Q1663H	ENST00000263253	NM_001429.3	1663	caG/caT																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47032551	47032551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	182	541	1	ENST00000329236.7:c.226G>A	p.Gly76Ser	p.G76S	ENST00000329236	NM_001204466.1	76	Ggc/Agc																																													NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90958479	90958480	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	136	285	0	ENST00000265433.3:c.1958dup	p.Leu654AlafsTer5	p.L654Afs*5	ENST00000265433	NM_002485.4	653	aag/aaAg																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115114271	115114272	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	148	312	0	ENST00000257566.3:c.945dup	p.Gln316ThrfsTer11	p.Q316Tfs*11	ENST00000257566	NM_016569.3	315	-/A																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37627501	37627501	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	239	528	0	ENST00000447079.4:c.1421delA	p.Asn474IlefsTer8	p.N474Ifs*8	ENST00000447079	NM_015083.1	472	gtA/gt																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47161939	47161939	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	132	321	3	ENST00000409792.3:c.4187del	p.Asn1396MetfsTer16	p.N1396Mfs*16	ENST00000409792	NM_014159.6	1396	aAt/at																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1221239	1221240	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	231	499	0	ENST00000326873.7:c.762_763insA	p.Phe255IlefsTer11	p.F255Ifs*11	ENST00000326873	NM_000455.4	254	-/A																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227663299	227663301	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	118	296	0	ENST00000305123.5:c.154_156delAAG	p.Lys52del	p.K52del	ENST00000305123	NM_005544.2	52	AAG/-																																													NEWRECORD																																		
CD79A	973	MSKCC	GRCh37	19	42383118	42383118	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	271	558	5	ENST00000221972.3:c.142del	p.Glu48LysfsTer44	p.E48Kfs*44	ENST00000221972	NM_021601.3	46	ctG/ct																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103506173	103506173	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	193	442	0	ENST00000355739.4:c.334del	p.Thr112HisfsTer3	p.T112Hfs*3	ENST00000355739	NM_000123.3	111	Aaa/aa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112116500	112116501	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	51	440	0	ENST00000257430.4:c.546dup	p.Asp183ArgfsTer10	p.D183Rfs*10	ENST00000257430	NM_000038.5	182	aca/acAa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175180	112175181	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0007929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	43	250	0	ENST00000257430.4:c.3890_3891dup	p.Ser1298IlefsTer8	p.S1298Ifs*8	ENST00000257430	NM_000038.5	1297	gat/gATat																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578464	7578476	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGCCGGGCGG	GGGTGCCGGGCGG	-	rs876659215		P-0007929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	127	455	1	ENST00000269305.4:c.454_466del	p.Pro152AlafsTer14	p.P152Afs*14	ENST00000269305	NM_001126112.2	152	CCGCCCGGCACCCgc/gc																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28980020	28980021	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAA			P-0006684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	160	275	1	ENST00000282397.4:c.1445_1447dup	p.Phe482dup	p.F482dup	ENST00000282397	NM_002019.4	482	tgt/tTTTgt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1085	243	509	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1330	59	504	2	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	101	269	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0007602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	190	491	1	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022403	31022425	+	frameshift_variant	Frame_Shift_Del	DEL	CACCACTGCCATAGAGAGGCGGC	CACCACTGCCATAGAGAGGCGGC	-			P-0007602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	99	274	0	ENST00000375687.4:c.1900_1922delAGAGAGGCGGCCACCACTGCCAT	p.Glu635ArgfsTer15	p.E635Rfs*15	ENST00000375687	NM_015338.5	630	CACCACTGCCATAGAGAGGCGGCc/c																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30732957	30732957	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs727504421		P-0007602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	425	402	0	ENST00000295754.5:c.1570G>A	p.Asp524Asn	p.D524N	ENST00000295754	NM_003242.5	524	Gac/Aac																																													NEWRECORD																																		
FGF3	2248	MSKCC	GRCh37	11	69633625	69633625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	35	72	0	ENST00000334134.2:c.77G>A	p.Arg26Gln	p.R26Q	ENST00000334134	NM_005247.2	26	cGg/cAg																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114905821	114905822	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0007602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1300	327	711	0	ENST00000543371.1:c.842_843del	p.Pro281HisfsTer46	p.P281Hfs*46	ENST00000543371	NM_001198531.1	280	taCCcc/tacc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112176009	112176009	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	187	350	0	ENST00000257430.4:c.4720delA	p.Ile1574TyrfsTer2	p.I1574Yfs*2	ENST00000257430	NM_000038.5	1573	gAa/ga																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	441	549	0	ENST00000269305.4:c.403delT	p.Cys135AlafsTer35	p.C135Afs*35	ENST00000269305	NM_001126112.2	135	Tgc/gc																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0007039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	63	505	4	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0007039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	280	472	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
SH2D1A	4068	MSKCC	GRCh37	X	123504041	123504041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	68	456	1	ENST00000371139.4:c.217C>T	p.His73Tyr	p.H73Y	ENST00000371139	NM_001114937.2	73	Cat/Tat																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175747	112175748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATACTTT			P-0007039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	212	388	0	ENST00000257430.4:c.4459_4465dup	p.Leu1489TyrfsTer27	p.L1489Yfs*27	ENST00000257430	NM_000038.5	1486	gat/gATACTTTat																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0012214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	21	649	1	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7117243	7117243	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	27	791	1	ENST00000302850.5:c.3973G>T	p.Glu1325Ter	p.E1325*	ENST00000302850	NM_000208.2	1325	Gag/Tag																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36252856	36252856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	33	404	0	ENST00000300305.3:c.506G>A	p.Arg169Lys	p.R169K	ENST00000300305		169	aGa/aAa																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123215276	123215276	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	22	840	0	ENST00000218089.9:c.2822C>A	p.Ser941Ter	p.S941*	ENST00000218089	NM_001042749.1	941	tCa/tAa																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	150001331	150001331	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	48	786	0	ENST00000253339.5:c.2273del	p.Ala758ValfsTer8	p.A758Vfs*8	ENST00000253339		758	gCt/gt																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36252970	36252971	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	35	418	0	ENST00000300305.3:c.391dup	p.Thr131AsnfsTer7	p.T131Nfs*7	ENST00000300305		131	act/aAct																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577563	7577563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	62	588	1	ENST00000269305.4:c.718A>G	p.Ser240Gly	p.S240G	ENST00000269305	NM_001126112.2	240	Agt/Ggt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105709	27105709	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	44	540	1	ENST00000324856.7:c.5320G>T	p.Glu1774Ter	p.E1774*	ENST00000324856	NM_006015.4	1774	Gaa/Taa																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49431363	49431386	+	inframe_deletion	In_Frame_Del	DEL	TCCTTCTTCTCATGCTCCAACAGG	TCCTTCTTCTCATGCTCCAACAGG	-			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	54	334	0	ENST00000301067.7:c.9753_9776del	p.Asp3251_Lys3258del	p.D3251_K3258del	ENST00000301067	NM_003482.3	3251	gaCCTGTTGGAGCATGAGAAGAAGGAg/gag																																													NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28608255	28608255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	55	749	0	ENST00000241453.7:c.1801C>A	p.Leu601Ile	p.L601I	ENST00000241453	NM_004119.2	601	Ctc/Atc																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	29001320	29001320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	48	576	0	ENST00000282397.4:c.1412G>T	p.Cys471Phe	p.C471F	ENST00000282397	NM_002019.4	471	tGt/tTt																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88476242	88476243	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	52	606	0	ENST00000360948.2:c.1889_1889+1delinsTT		p.X630_splice	ENST00000360948	NM_001012338.2	630																																														NEWRECORD																																		
ERCC4	2072	MSKCC	GRCh37	16	14041474	14041474	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	37	367	2	ENST00000311895.7:c.2021G>T	p.Gly674Val	p.G674V	ENST00000311895	NM_005236.2	674	gGc/gTc																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	12028622	12028622	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	68	567	0	ENST00000353533.5:c.825A>G	p.Ile275Met	p.I275M	ENST00000353533	NM_003010.3	275	atA/atG																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29679336	29679336	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	57	644	1	ENST00000358273.4:c.7519A>T	p.Thr2507Ser	p.T2507S	ENST00000358273	NM_001042492.2	2507	Acc/Tcc																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1207031	1207031	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	70	460	0	ENST00000326873.7:c.119G>T	p.Arg40Leu	p.R40L	ENST00000326873	NM_000455.4	40	cGc/cTc																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17946770	17946770	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	75	647	0	ENST00000458235.1:c.1877A>T	p.Gln626Leu	p.Q626L	ENST00000458235	NM_000215.3	626	cAg/cTg																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	30143164	30143164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	52	479	0	ENST00000389048.3:c.362G>A	p.Arg121Gln	p.R121Q	ENST00000389048	NM_004304.4	121	cGg/cAg																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198273179	198273179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	72	817	0	ENST00000335508.6:c.1031G>T	p.Ser344Ile	p.S344I	ENST00000335508	NM_012433.2	344	aGt/aTt																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55955946	55955946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	44	635	0	ENST00000263923.4:c.3216G>T	p.Met1072Ile	p.M1072I	ENST00000263923	NM_002253.2	1072	atG/atT																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1282703	1282703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	189	530	0	ENST00000310581.5:c.1610G>A	p.Arg537His	p.R537H	ENST00000310581	NM_198253.2	537	cGt/cAt																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1294669	1294669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	17	133	0	ENST00000310581.5:c.332C>T	p.Pro111Leu	p.P111L	ENST00000310581	NM_198253.2	111	cCc/cTc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174995	112174995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	26	385	0	ENST00000257430.4:c.3704C>T	p.Ser1235Phe	p.S1235F	ENST00000257430	NM_000038.5	1235	tCt/tTt																																													NEWRECORD																																		
BTK	695	MSKCC	GRCh37	X	100624986	100624987	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	45	662	0	ENST00000308731.7:c.390_391insA	p.Val131SerfsTer7	p.V131Sfs*7	ENST00000308731	NM_000061.2	130	-/A																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89624293	89624293	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000104-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			383	104	161	0	ENST00000371953.3:c.67T>G	p.Leu23Val	p.L23V	ENST00000371953	NM_000314.4	23	Tta/Gta																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89692887	89692887	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000104-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	79	133	0	ENST00000371953.3:c.371G>C	p.Cys124Ser	p.C124S	ENST00000371953	NM_000314.4	124	tGt/tCt																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000104-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			597	257	351	0	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68845682	68845682	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000104-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	151	397	1	ENST00000261769.5:c.928G>T	p.Glu310Ter	p.E310*	ENST00000261769	NM_004360.3	310	Gag/Tag																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118344075	118344076	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000104-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			460	125	262	0	ENST00000534358.1:c.2206dupA	p.Arg736LysfsTer7	p.R736Kfs*7	ENST00000534358	NM_005933.3	734	aga/agAa																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	93979332	93979332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	75	617	0	ENST00000369303.4:c.1496C>T	p.Ser499Leu	p.S499L	ENST00000369303	NM_004440.3	499	tCa/tTa																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	149983070	149983070	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	62	478	0	ENST00000253339.5:c.3188G>T	p.Gly1063Val	p.G1063V	ENST00000253339		1063	gGa/gTa																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974787	21974787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	92	143	0	ENST00000304494.5:c.40G>A	p.Asp14Asn	p.D14N	ENST00000304494	NM_000077.4	14	Gac/Aac																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108141839	108141839	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	79	335	0	ENST00000278616.4:c.2887A>T	p.Met963Leu	p.M963L	ENST00000278616	NM_000051.3	963	Atg/Ttg																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57859574	57859574	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	277	551	0	ENST00000228682.2:c.628C>G	p.Pro210Ala	p.P210A	ENST00000228682	NM_005269.2	210	Ccc/Gcc																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110436876	110436876	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	262	168	0	ENST00000375856.3:c.1525G>C	p.Asp509His	p.D509H	ENST00000375856	NM_003749.2	509	Gac/Cac																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72984850	72984850	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	137	369	0	ENST00000268489.5:c.2734C>G	p.Pro912Ala	p.P912A	ENST00000268489	NM_006885.3	912	Ccc/Gcc																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72993146	72993146	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1198	173	685	0	ENST00000268489.5:c.899A>G	p.His300Arg	p.H300R	ENST00000268489	NM_006885.3	300	cAc/cGc																																													NEWRECORD																																		
PIK3C3	5289	MSKCC	GRCh37	18	39617655	39617655	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	40	327	0	ENST00000262039.4:c.1840-1G>C		p.X614_splice	ENST00000262039	NM_002647.2	614																																														NEWRECORD																																		
NF2	4771	MSKCC	GRCh37	22	30051637	30051637	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	292	343	0	ENST00000338641.4:c.571T>G	p.Trp191Gly	p.W191G	ENST00000338641	NM_000268.3	191	Tgg/Ggg																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63410775	63410775	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	99	521	0	ENST00000330258.3:c.2392C>G	p.Gln798Glu	p.Q798E	ENST00000330258	NM_152424.3	798	Caa/Gaa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579521	7579528	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CAGTGAAC	CAGTGAAC	-			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	158	286	0	ENST00000269305.4:c.159_166del	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgGTTCACTGaa/tgaa																																													NEWRECORD																																		
JAK2	3717	MSKCC	GRCh37	9	5069982	5069983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	62	426	0	ENST00000381652.3:c.1573dup	p.Thr525AsnfsTer19	p.T525Nfs*19	ENST00000381652	NM_004972.3	524	cca/ccAa																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0000714-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	70	258	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15350576	15350578	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0000714-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	44	154	0	ENST00000263377.2:c.3337_3339delGAG	p.Glu1113del	p.E1113del	ENST00000263377	NM_058243.2	1113	GAG/-																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112164646	112164646	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000714-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	35	135	0	ENST00000257430.4:c.1720G>T	p.Glu574Ter	p.E574*	ENST00000257430	NM_000038.5	574	Gaa/Taa																																													NEWRECORD																																		
YES1	7525	MSKCC	GRCh37	18	742923	742923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000714-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	81	376	0	ENST00000314574.4:c.1055C>T	p.Ser352Leu	p.S352L	ENST00000314574	NM_005433.3	352	tCa/tTa																																													NEWRECORD																																		
YES1	7525	MSKCC	GRCh37	18	742959	742959	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000714-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			504	98	453	0	ENST00000314574.4:c.1019C>G	p.Ser340Cys	p.S340C	ENST00000314574	NM_005433.3	340	tCt/tGt																																													NEWRECORD																																		
YES1	7525	MSKCC	GRCh37	18	742978	742978	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000714-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			523	98	460	1	ENST00000314574.4:c.1000C>G	p.Pro334Ala	p.P334A	ENST00000314574	NM_005433.3	334	Cca/Gca																																													NEWRECORD																																		
YES1	7525	MSKCC	GRCh37	18	743014	743014	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000714-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	109	441	0	ENST00000314574.4:c.964C>G	p.Gln322Glu	p.Q322E	ENST00000314574	NM_005433.3	322	Cag/Gag																																													NEWRECORD																																		
YES1	7525	MSKCC	GRCh37	18	743066	743066	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000714-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			524	123	418	0	ENST00000314574.4:c.912C>G	p.Ile304Met	p.I304M	ENST00000314574	NM_005433.3	304	atC/atG																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175970	112175970	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000714-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	22	163	0	ENST00000257430.4:c.4682delA	p.Lys1561ArgfsTer4	p.K1561Rfs*4	ENST00000257430	NM_000038.5	1560	gAa/ga																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579706	7579707	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000714-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			351	180	427	0	ENST00000269305.4:c.89dup	p.Asn30LysfsTer13	p.N30Kfs*13	ENST00000269305	NM_001126112.2	30	aac/aaAc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	89	392	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	29041183	29041183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1272	225	641	0	ENST00000282397.4:c.245G>T	p.Gly82Val	p.G82V	ENST00000282397	NM_002019.4	82	gGa/gTa																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2211752	2211752	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0005510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1475	338	938	0	ENST00000398665.3:c.1468T>C	p.Ser490Pro	p.S490P	ENST00000398665	NM_032482.2	490	Tcc/Ccc																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10610315	10610315	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1089	290	704	0	ENST00000171111.5:c.395T>G	p.Val132Gly	p.V132G	ENST00000171111	NM_203500.1	132	gTc/gGc																																													NEWRECORD																																		
AURKA	6790	MSKCC	GRCh37	20	54961468	54961468	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	135	272	1	ENST00000312783.6:c.164A>T	p.Gln55Leu	p.Q55L	ENST00000312783	NM_198436.1	55	cAg/cTg																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1072	267	710	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	72	424	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162724562	162724562	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000873-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1010	148	396	0	ENST00000367921.3:c.334A>C	p.Ile112Leu	p.I112L	ENST00000367921	NM_006182.2	112	Atc/Ctc																																													NEWRECORD																																		
AKT3	10000	MSKCC	GRCh37	1	243716170	243716170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000873-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			734	375	541	0	ENST00000263826.5:c.1024G>T	p.Gly342Trp	p.G342W	ENST00000263826	NM_005465.4	342	Ggg/Tgg																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198266512	198266512	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000873-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	312	344	0	ENST00000335508.6:c.2324G>T	p.Arg775Leu	p.R775L	ENST00000335508	NM_012433.2	775	cGa/cTa																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66231754	66231754	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000873-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			484	71	403	1	ENST00000273854.3:c.1946C>A	p.Thr649Asn	p.T649N	ENST00000273854	NM_004439.5	649	aCt/aAt																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152420003	152420003	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000873-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			522	181	349	1	ENST00000206249.3:c.1690G>T	p.Asp564Tyr	p.D564Y	ENST00000206249	NM_000125.3	564	Gac/Tac																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9923450	9923450	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000873-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			399	164	431	0	ENST00000330684.3:c.1837T>G	p.Phe613Val	p.F613V	ENST00000330684	NM_001134407.1	613	Ttc/Gtc																																													NEWRECORD																																		
PIK3C3	5289	MSKCC	GRCh37	18	39584505	39584505	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0000873-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			355	79	228	1	ENST00000262039.4:c.1170G>T	p.Glu390Asp	p.E390D	ENST00000262039	NM_002647.2	390	gaG/gaT																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17937556	17937556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000873-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			522	111	562	0	ENST00000458235.1:c.3371C>T	p.Ser1124Leu	p.S1124L	ENST00000458235	NM_000215.3	1124	tCa/tTa																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76939678	76939678	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000873-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	245	432	2	ENST00000373344.5:c.1070A>C	p.Lys357Thr	p.K357T	ENST00000373344	NM_000489.3	357	aAa/aCa																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0000873-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	150	441	1	ENST00000326873.7:c.842dup	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggCc																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0006561-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			393	92	392	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006561-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			287	74	407	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
TGFBR1	7046	MSKCC	GRCh37	9	101911542	101911542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006561-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			289	87	409	0	ENST00000374994.4:c.1467G>C	p.Lys489Asn	p.K489N	ENST00000374994	NM_004612.2	489	aaG/aaC																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27099939	27099940	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006561-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			455	85	464	0	ENST00000324856.7:c.3821dup	p.Pro1275ThrfsTer12	p.P1275Tfs*12	ENST00000324856	NM_006015.4	1273	atg/atGg																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47041669	47041669	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006561-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			482	93	513	0	ENST00000329236.7:c.1662del	p.Ser555ArgfsTer71	p.S555Rfs*71	ENST00000329236	NM_001204466.1	554	Ccc/cc																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27094280	27094280	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006561-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			296	26	242	0	ENST00000324856.7:c.2989-1G>A		p.X997_splice	ENST00000324856	NM_006015.4	997																																														NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48593528	48593528	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006561-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			304	16	267	0	ENST00000342988.3:c.1279C>G	p.His427Asp	p.H427D	ENST00000342988	NM_005359.5	427	Cat/Gat																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0014400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	24	800	3	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																													NEWRECORD																																		
SPOP	8405	MSKCC	GRCh37	17	47696448	47696448	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	20	570	0	ENST00000347630.2:c.375T>G	p.Phe125Leu	p.F125L	ENST00000347630	NM_001007230.1	125	ttT/ttG																																													NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242793431	242793431	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376257658		P-0014400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	11	859	0	ENST00000334409.5:c.646G>A	p.Val216Met	p.V216M	ENST00000334409	NM_005018.2	216	Gtg/Atg																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061012	38061033	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGCCGGCGCGCCCTCTAGCT	GGGGCCGGCGCGCCCTCTAGCT	-			P-0014400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	54	347	0	ENST00000250448.2:c.956_977del	p.Gln319ProfsTer24	p.Q319Pfs*24	ENST00000250448	NM_004496.3	319	cAGCTAGAGGGCGCGCCGGCCCCc/cc																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67591140	67591141	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0014400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	11	254	0	ENST00000274335.5:c.1735dup	p.Gln579ProfsTer23	p.Q579Pfs*23	ENST00000274335		578	gac/gaCc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000786-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			235	461	339	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27022913	27022938	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCGCCGCCAGCAGCCTGGGCAA	CCCGCCGCCGCCAGCAGCCTGGGCAA	-			P-0000786-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			110	22	91	0	ENST00000324856.7:c.31_56del	p.Ser11AlafsTer91	p.S11Afs*91	ENST00000324856	NM_006015.4	7	CCCGCCGCCGCCAGCAGCCTGGGCAAc/c																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1293592	1293592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000786-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			425	200	335	0	ENST00000310581.5:c.1409G>A	p.Arg470His	p.R470H	ENST00000310581	NM_198253.2	470	cGc/cAc																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108142074	108142074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000786-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			603	335	401	0	ENST00000278616.4:c.3018G>A	p.Met1006Ile	p.M1006I	ENST00000278616	NM_000051.3	1006	atG/atA																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061007	38061022	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCGGGGGCCGGCGC	GCCCGGGGGCCGGCGC	-			P-0000786-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	140	215	0	ENST00000250448.2:c.967_982del	p.Ala323ProfsTer22	p.A323Pfs*22	ENST00000250448	NM_004496.3	323	GCGCCGGCCCCCGGGCcc/cc																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36252856	36252857	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000786-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			557	254	306	0	ENST00000300305.3:c.505dupA	p.Arg169LysfsTer44	p.R169Kfs*44	ENST00000300305		169	aga/aAga																																													NEWRECORD																																		
AKT3	10000	MSKCC	GRCh37	1	243736301	243736301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			877	224	362	1	ENST00000263826.5:c.746G>A	p.Arg249His	p.R249H	ENST00000263826	NM_005465.4	249	cGt/cAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0001079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			801	189	223	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																													NEWRECORD																																		
SDHD	6392	MSKCC	GRCh37	11	111958593	111958593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			575	151	252	0	ENST00000375549.3:c.65G>A	p.Arg22Gln	p.R22Q	ENST00000375549	NM_003002.3	22	cGa/cAa																																													NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28624277	28624277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1494	106	535	0	ENST00000241453.7:c.697G>A	p.Ala233Thr	p.A233T	ENST00000241453	NM_004119.2	233	Gcc/Acc																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32913143	32913143	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			896	71	243	0	ENST00000380152.3:c.4651C>T	p.Gln1551Ter	p.Q1551*	ENST00000380152		1551	Caa/Taa																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88423601	88423601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			759	94	397	0	ENST00000360948.2:c.2234G>A	p.Arg745Gln	p.R745Q	ENST00000360948	NM_001012338.2	745	cGg/cAg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0001079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			418	185	305	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																													NEWRECORD																																		
JUN	3725	MSKCC	GRCh37	1	59248430	59248431	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			724	104	258	0	ENST00000371222.2:c.312dup	p.Asp105ArgfsTer2	p.D105Rfs*2	ENST00000371222	NM_002228.3	104	-/A																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175175	112175175	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	64	127	0	ENST00000257430.4:c.3885del	p.Ala1296GlnfsTer9	p.A1296Qfs*9	ENST00000257430	NM_000038.5	1295	gAa/ga																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63554097	63554098	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0001079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1131	355	521	0	ENST00000307078.5:c.641dup	p.Leu215ThrfsTer16	p.L215Tfs*16	ENST00000307078	NM_004655.3	214	gga/ggGa																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37881414	37881414	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1131692237		P-0012836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	1110	393	0	ENST00000269571.5:c.2606T>G	p.Leu869Arg	p.L869R	ENST00000269571		869	cTg/cGg																																													NEWRECORD																																		
FOXO1	2308	MSKCC	GRCh37	13	41134184	41134184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	608	804	0	ENST00000379561.5:c.1444C>G	p.Pro482Ala	p.P482A	ENST00000379561	NM_002015.3	482	Cct/Gct																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68863681	68863682	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0012836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	317	348	0	ENST00000261769.5:c.2421_2422dup	p.Gly808ValfsTer9	p.G808Vfs*9	ENST00000261769	NM_004360.3	807	att/atTGt																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061202	38061203	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGGT			P-0005348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	167	194	0	ENST00000250448.2:c.786_787insACCGC	p.Gln263ThrfsTer60	p.Q263Tfs*60	ENST00000250448	NM_004496.3	262	-/ACCGC																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	177	286	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15296358	15296358	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	83	543	3	ENST00000263388.2:c.2084del	p.Pro695ArgfsTer165	p.P695Rfs*165	ENST00000263388	NM_000435.2	695	cCg/cg																																													NEWRECORD																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	245	548	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	124	386	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25380277	25380277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	119	368	0	ENST00000256078.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	61	Caa/Aaa																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	26101090	26101090	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	74	473	0	ENST00000435504.4:c.2T>C	p.Met1?	p.M1?	ENST00000435504		1	aTg/aCg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	38	287	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	100	291	1	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																													NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35867540	35867541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1250237683		P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	100	356	0	ENST00000303115.3:c.361dup	p.Ile121AsnfsTer8	p.I121Nfs*8	ENST00000303115	NM_002185.3	118	-/A																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76890149	76890150	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	245	608	0	ENST00000373344.5:c.4744dup	p.Thr1582AsnfsTer19	p.T1582Nfs*19	ENST00000373344	NM_000489.3	1582	aca/aAca																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98268793	98268793	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	85	519	0	ENST00000331920.6:c.290delA	p.Asn97ThrfsTer20	p.N97Tfs*20	ENST00000331920	NM_000264.3	97	aAc/ac																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49934243	49934243	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1407832113		P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	291	736	2	ENST00000296474.3:c.2264del	p.Gly755ValfsTer19	p.G755Vfs*19	ENST00000296474	NM_002447.2	755	gGt/gt																																													NEWRECORD																																		
PIK3R3	8503	MSKCC	GRCh37	1	46527638	46527638	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	92	486	2	ENST00000262741.5:c.727C>T	p.Arg243Ter	p.R243*	ENST00000262741	NM_003629.3	243	Cga/Tga																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120510154	120510154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	55	458	1	ENST00000256646.2:c.1355G>A	p.Arg452His	p.R452H	ENST00000256646	NM_024408.3	452	cGt/cAt																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156836745	156836745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	99	514	0	ENST00000524377.1:c.403G>A	p.Val135Met	p.V135M	ENST00000524377	NM_002529.3	135	Gtg/Atg																																													NEWRECORD																																		
MYCN	4613	MSKCC	GRCh37	2	16085933	16085933	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	68	325	0	ENST00000281043.3:c.1109T>C	p.Leu370Ser	p.L370S	ENST00000281043	NM_005378.4	370	tTg/tCg																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212248763	212248763	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	64	230	0	ENST00000342788.4:c.3504G>T	p.Glu1168Asp	p.E1168D	ENST00000342788	NM_005235.2	1168	gaG/gaT																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49935070	49935070	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1189	136	726	1	ENST00000296474.3:c.1929G>T	p.Glu643Asp	p.E643D	ENST00000296474	NM_002447.2	643	gaG/gaT																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89156956	89156956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	95	404	0	ENST00000336596.2:c.58G>A	p.Gly20Arg	p.G20R	ENST00000336596	NM_005233.5	20	Ggg/Agg																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89259095	89259095	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	54	391	0	ENST00000336596.2:c.239A>T	p.Asn80Ile	p.N80I	ENST00000336596	NM_005233.5	80	aAt/aTt																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55961790	55961790	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	150	546	0	ENST00000263923.4:c.2771T>C	p.Leu924Pro	p.L924P	ENST00000263923	NM_002253.2	924	cTg/cCg																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56178218	56178218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	142	434	0	ENST00000399503.3:c.3191G>A	p.Arg1064Lys	p.R1064K	ENST00000399503	NM_005921.1	1064	aGa/aAa																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176638701	176638701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	107	437	0	ENST00000439151.2:c.3301G>A	p.Asp1101Asn	p.D1101N	ENST00000439151	NM_022455.4	1101	Gat/Aat																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176720964	176720964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	181	489	0	ENST00000439151.2:c.6595C>T	p.Arg2199Cys	p.R2199C	ENST00000439151	NM_022455.4	2199	Cgt/Tgt																																													NEWRECORD																																		
PRDM1	639	MSKCC	GRCh37	6	106553321	106553321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	100	303	1	ENST00000369096.4:c.1286G>A	p.Ser429Asn	p.S429N	ENST00000369096	NM_001198.3	429	aGc/aAc																																													NEWRECORD																																		
TNFAIP3	7128	MSKCC	GRCh37	6	138200477	138200477	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	105	218	0	ENST00000237289.4:c.1895G>C	p.Arg632Thr	p.R632T	ENST00000237289	NM_001270507.1	632	aGa/aCa																																													NEWRECORD																																		
TGFBR1	7046	MSKCC	GRCh37	9	101891145	101891145	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	40	293	0	ENST00000374994.4:c.106T>C	p.Cys36Arg	p.C36R	ENST00000374994	NM_004612.2	36	Tgt/Cgt																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139390606	139390606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	281	693	0	ENST00000277541.6:c.7585G>A	p.Val2529Ile	p.V2529I	ENST00000277541	NM_017617.3	2529	Gtc/Atc																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118372558	118372558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	207	403	0	ENST00000534358.1:c.6491C>T	p.Pro2164Leu	p.P2164L	ENST00000534358	NM_005933.3	2164	cCg/cTg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49424776	49424776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	242	536	0	ENST00000301067.7:c.13571G>A	p.Arg4524Gln	p.R4524Q	ENST00000301067	NM_003482.3	4524	cGg/cAg																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56490889	56490889	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	54	449	0	ENST00000267101.3:c.2335C>A	p.Pro779Thr	p.P779T	ENST00000267101	NM_001982.3	779	Cca/Aca																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133245292	133245292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	141	479	0	ENST00000320574.5:c.1955C>T	p.Ala652Val	p.A652V	ENST00000320574	NM_006231.2	652	gCt/gTt																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38060964	38060964	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35391958		P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	88	282	0	ENST00000250448.2:c.1025C>T	p.Ala342Val	p.A342V	ENST00000250448	NM_004496.3	342	gCg/gTg																																													NEWRECORD																																		
TRAF7	84231	MSKCC	GRCh37	16	2225320	2225320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	115	497	0	ENST00000326181.6:c.1405C>A	p.Leu469Met	p.L469M	ENST00000326181	NM_032271.2	469	Ctg/Atg																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	10274042	10274042	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1184494228		P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	220	571	3	ENST00000330684.3:c.227G>A	p.Arg76His	p.R76H	ENST00000330684	NM_001134407.1	76	cGc/cAc																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89337248	89337248	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	80	394	0	ENST00000301030.4:c.7783G>T	p.Asp2595Tyr	p.D2595Y	ENST00000301030	NM_001256183.1	2595	Gat/Tat																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48586237	48586237	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	90	235	0	ENST00000342988.3:c.906G>A	p.Trp302Ter	p.W302*	ENST00000342988	NM_005359.5	302	tgG/tgA																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604745	48604745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	125	433	0	ENST00000342988.3:c.1567T>C	p.Cys523Arg	p.C523R	ENST00000342988	NM_005359.5	523	Tgc/Cgc																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10248585	10248585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	94	461	1	ENST00000340748.4:c.4168G>A	p.Gly1390Arg	p.G1390R	ENST00000340748		1390	Ggg/Agg																																													NEWRECORD																																		
SMARCB1	6598	MSKCC	GRCh37	22	24158992	24158992	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	79	436	0	ENST00000263121.7:c.664C>A	p.Leu222Ile	p.L222I	ENST00000263121	NM_003073.3	222	Ctc/Atc																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41548294	41548294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	136	431	0	ENST00000263253.7:c.3082G>A	p.Asp1028Asn	p.D1028N	ENST00000263253	NM_001429.3	1028	Gac/Aac																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39911613	39911613	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	89	509	0	ENST00000378444.4:c.5017T>A	p.Leu1673Met	p.L1673M	ENST00000378444	NM_001123385.1	1673	Ttg/Atg																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39933367	39933367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	98	549	0	ENST00000378444.4:c.1232G>A	p.Arg411Gln	p.R411Q	ENST00000378444	NM_001123385.1	411	cGg/cAg																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53223742	53223742	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	278	665	0	ENST00000375401.3:c.3617A>G	p.Gln1206Arg	p.Q1206R	ENST00000375401	NM_004187.3	1206	cAg/cGg																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53228159	53228159	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	209	464	2	ENST00000375401.3:c.2243G>A	p.Arg748Gln	p.R748Q	ENST00000375401	NM_004187.3	748	cGg/cAg																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411737	63411737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	120	658	0	ENST00000330258.3:c.1430C>A	p.Pro477His	p.P477H	ENST00000330258	NM_152424.3	477	cCt/cAt																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63412470	63412470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1204	120	776	0	ENST00000330258.3:c.697G>A	p.Asp233Asn	p.D233N	ENST00000330258	NM_152424.3	233	Gat/Aat																																													NEWRECORD																																		
SH2D1A	4068	MSKCC	GRCh37	X	123480572	123480572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	62	492	0	ENST00000371139.4:c.80G>A	p.Gly27Asp	p.G27D	ENST00000371139	NM_001114937.2	27	gGc/gAc																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118352756	118352756	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	53	417	0	ENST00000534358.1:c.3964del	p.Thr1322ProfsTer34	p.T1322Pfs*34	ENST00000534358	NM_005933.3	1321	Aaa/aa																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139390735	139390736	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1003	117	610	0	ENST00000277541.6:c.7455dupC	p.Ser2486LeufsTer21	p.S2486Lfs*21	ENST00000277541	NM_017617.3	2485	-/C																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70360588	70360589	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGCAGC			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	128	421	0	ENST00000374080.3:c.6162_6167dup	p.Gln2075_Gln2076dup	p.Q2075_Q2076dup	ENST00000374080		2075	gag/gAGCAGCag																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70404809	70404809	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	38	276	1	ENST00000373644.4:c.2328del	p.Lys776AsnfsTer19	p.K776Nfs*19	ENST00000373644	NM_030625.2	775	Aaa/aa																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139412641	139412641	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	85	498	0	ENST00000277541.6:c.1203del	p.Ser402ArgfsTer229	p.S402Rfs*229	ENST00000277541	NM_017617.3	401	ccC/cc																																													NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1806180	1806181	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775260779		P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	81	511	1	ENST00000260795.2:c.1206dup	p.Lys403GlnfsTer93	p.K403Qfs*93	ENST00000260795		400	agc/agCc																																													NEWRECORD																																		
HIST1H3D	8351	MSKCC	GRCh37	6	26197339	26197343	+	frameshift_variant	Frame_Shift_Del	DEL	ACCGT	ACCGT	-			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1417	120	938	0	ENST00000356476.2:c.136_140del	p.Thr46GlyfsTer27	p.T46Gfs*27	ENST00000356476		46	ACGGTg/g																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16262553	16262553	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	45	284	0	ENST00000375759.3:c.9822del	p.Ser3275ValfsTer9	p.S3275Vfs*9	ENST00000375759	NM_015001.2	3273	aCc/ac																																													NEWRECORD																																		
TRAF7	84231	MSKCC	GRCh37	16	2223250	2223250	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	96	541	0	ENST00000326181.6:c.863del	p.Lys288ArgfsTer42	p.K288Rfs*42	ENST00000326181	NM_032271.2	288	Aag/ag																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46245449	46245449	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	163	300	0	ENST00000334344.6:c.3546del	p.Phe1182LeufsTer6	p.F1182Lfs*6	ENST00000334344	NM_152641.2	1181	agT/ag																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202149634	202149635	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	46	388	0	ENST00000358485.4:c.1077dup	p.Leu360ThrfsTer6	p.L360Tfs*6	ENST00000358485	NM_001080125.1	359	caa/cAaa																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108199804	108199804	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	51	309	0	ENST00000278616.4:c.7150del	p.Met2384Ter	p.M2384*	ENST00000278616	NM_000051.3	2382	ggA/gg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0012239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	63	583	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	64	273	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157454284	157454284	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	48	480	0	ENST00000346085.5:c.2494C>T	p.Gln832Ter	p.Q832*	ENST00000346085	NM_020732.3	832	Cag/Tag																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29559158	29559159	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	73	478	0	ENST00000358273.4:c.3267dup	p.Gly1090ArgfsTer16	p.G1090Rfs*16	ENST00000358273	NM_001042492.2	1089	gaa/gAaa																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0015051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	173	548	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0015051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	45	492	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	118	257	0	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56160679	56160680	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	362	402	0	ENST00000399503.3:c.954dupA	p.Leu319ThrfsTer7	p.L319Tfs*7	ENST00000399503	NM_005921.1	318	tta/ttAa																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16258734	16258735	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	166	546	0	ENST00000375759.3:c.6005dup	p.Asn2002LysfsTer2	p.N2002Kfs*2	ENST00000375759	NM_015001.2	2000	gga/ggAa																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111549	8111550	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	182	532	0	ENST00000346208.3:c.1037dup	p.Leu347AlafsTer5	p.L347Afs*5	ENST00000346208		345	-/A																																													NEWRECORD																																		
CDKN1B	1027	MSKCC	GRCh37	12	12870966	12870967	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	117	338	0	ENST00000228872.4:c.193_194insG	p.Gln65ArgfsTer60	p.Q65Rfs*60	ENST00000228872	NM_004064.3	65	cag/cGag																																													NEWRECORD																																		
KLF4	9314	MSKCC	GRCh37	9	110248151	110248151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	187	466	1	ENST00000374672.4:c.1321G>A	p.Asp441Asn	p.D441N	ENST00000374672	NM_004235.4	441	Gat/Aat																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0008160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	184	346	1	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0008160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	332	462	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45368289	45368290	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCC			P-0008160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	68	410	0	ENST00000262160.6:c.1310_1312dup	p.Trp437_Ile438insArg	p.W437_I438insR	ENST00000262160	NM_005901.5	438	att/aGGAtt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0010112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	130	499	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	147	460	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63852251	63852251	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137983907		P-0010112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	151	388	2	ENST00000279873.7:c.3029G>A	p.Arg1010Gln	p.R1010Q	ENST00000279873	NM_032199.2	1010	cGg/cAg																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162740262	162740262	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs199526949		P-0010112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	175	508	0	ENST00000367921.3:c.1464A>G	p.Ile488Met	p.I488M	ENST00000367921	NM_006182.2	488	atA/atG																																													NEWRECORD																																		
HIST1H3C	8352	MSKCC	GRCh37	6	26045982	26045982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	332	1043	1	ENST00000540144.1:c.344C>T	p.Ala115Val	p.A115V	ENST00000540144	NM_003531.2	115	gCt/gTt																																													NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91306337	91306337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	225	547	2	ENST00000355112.3:c.2024C>T	p.Ala675Val	p.A675V	ENST00000355112	NM_000057.2	675	gCg/gTg																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9624957	9624957	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	464	463	0	ENST00000353224.5:c.20A>G	p.Lys7Arg	p.K7R	ENST00000353224	NM_177990.2	7	aAa/aGa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112176036	112176037	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0010112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	161	462	0	ENST00000257430.4:c.4746_4747dup	p.Met1583ThrfsTer68	p.M1583Tfs*68	ENST00000257430	NM_000038.5	1582	gcc/gcCAc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	187	305	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	30143128	30143128	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	94	263	0	ENST00000389048.3:c.398G>T	p.Arg133Leu	p.R133L	ENST00000389048	NM_004304.4	133	cGc/cTc																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55953807	55953807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	110	387	1	ENST00000263923.4:c.3629C>A	p.Pro1210His	p.P1210H	ENST00000263923	NM_002253.2	1210	cCc/cAc																																													NEWRECORD																																		
PARK2	5071	MSKCC	GRCh37	6	162206896	162206896	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	93	275	1	ENST00000366898.1:c.779G>T	p.Cys260Phe	p.C260F	ENST00000366898	NM_004562.2	260	tGc/tTc																																													NEWRECORD																																		
IGF2	3481	MSKCC	GRCh37	11	2154345	2154345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	165	389	0	ENST00000434045.2:c.583G>T	p.Gly195Cys	p.G195C	ENST00000434045	NM_001127598.1	195	Ggt/Tgt																																													NEWRECORD																																		
HNF1A	6927	MSKCC	GRCh37	12	121432139	121432139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	134	347	0	ENST00000257555.6:c.886G>A	p.Gly296Arg	p.G296R	ENST00000257555		296	Gga/Aga																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63410931	63410931	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	115	456	0	ENST00000330258.3:c.2236C>A	p.Pro746Thr	p.P746T	ENST00000330258	NM_152424.3	746	Cct/Act																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131927082	131927083	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	115	386	0	ENST00000265335.6:c.1620dup	p.Leu541AlafsTer7	p.L541Afs*7	ENST00000265335		540	atg/atGg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0005715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	143	381	1	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8100727	8100728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	88	522	0	ENST00000346208.3:c.708dupC	p.Ser237GlnfsTer66	p.S237Qfs*66	ENST00000346208		234	ttc/ttCc																																													NEWRECORD																																		
KIT	3815	MSKCC	GRCh37	4	55589750	55589750	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0005715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	114	624	1	ENST00000288135.5:c.1232C>A	p.Thr411Lys	p.T411K	ENST00000288135	NM_000222.2	411	aCa/aAa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	374	721	0	ENST00000269305.4:c.794T>G	p.Leu265Arg	p.L265R	ENST00000269305	NM_001126112.2	265	cTg/cGg																																													NEWRECORD																																		
IGF1	3479	MSKCC	GRCh37	12	102869539	102869540	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0005715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	102	565	0	ENST00000307046.8:c.101dup	p.Tyr34Ter	p.Y34*	ENST00000307046	NM_001111285.1	34	tac/taAc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577151	7577156	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TACCAC	TACCAC	-			P-0005715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	331	660	0	ENST00000269305.4:c.783-1_787del		p.X261_splice	ENST00000269305	NM_001126112.2	261																																														NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25380282	25380282	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	92	662	0	ENST00000256078.4:c.176C>G	p.Ala59Gly	p.A59G	ENST00000256078	NM_033360.2	59	gCa/gGa																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46123697	46123697	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	69	420	0	ENST00000334344.6:c.79del	p.His27ThrfsTer31	p.H27Tfs*31	ENST00000334344	NM_152641.2	26	ttC/tt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577594	7577605	+	inframe_deletion	In_Frame_Del	DEL	ACAGTCAGAGCC	ACAGTCAGAGCC	-			P-0013295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	60	592	0	ENST00000269305.4:c.676_687del	p.Gly226_Cys229del	p.G226_C229del	ENST00000269305	NM_001126112.2	226	GGCTCTGACTGT/-																																													NEWRECORD																																		
NKX2-1	7080	MSKCC	GRCh37	14	36986635	36986636	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	17	109	0	ENST00000354822.5:c.1053dup	p.Gly352ArgfsTer87	p.G352Rfs*87	ENST00000354822	NM_001079668.2	351	-/A																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	132	639	9	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49420426	49420426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	75	285	0	ENST00000301067.7:c.15323G>A	p.Arg5108His	p.R5108H	ENST00000301067	NM_003482.3	5108	cGt/cAt																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	68	372	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	141	428	2	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	33	158	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	83	247	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11141498	11141498	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	82	406	0	ENST00000344626.4:c.3480delG	p.Leu1161SerfsTer3	p.L1161Sfs*3	ENST00000344626	NM_003072.3	1159	Ggg/gg																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78681708	78681708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	123	362	0	ENST00000306801.3:c.416G>A	p.Arg139His	p.R139H	ENST00000306801	NM_020761.2	139	cGc/cAc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	102	355	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	56	115	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68849663	68849663	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	91	258	0	ENST00000261769.5:c.1565+1G>A		p.X522_splice	ENST00000261769	NM_004360.3	522																																														NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	186	646	1	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																													NEWRECORD																																		
JAK2	3717	MSKCC	GRCh37	9	5069060	5069060	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	97	388	0	ENST00000381652.3:c.1370del	p.Asn457MetfsTer22	p.N457Mfs*22	ENST00000381652	NM_004972.3	455	acA/ac																																													NEWRECORD																																		
KIT	3815	MSKCC	GRCh37	4	55561767	55561767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	99	370	0	ENST00000288135.5:c.157G>A	p.Glu53Lys	p.E53K	ENST00000288135	NM_000222.2	53	Gag/Aag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579359	7579359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	121	417	2	ENST00000269305.4:c.328C>T	p.Arg110Cys	p.R110C	ENST00000269305	NM_001126112.2	110	Cgt/Tgt																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180048662	180048662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	38	287	0	ENST00000261937.6:c.1900G>A	p.Ala634Thr	p.A634T	ENST00000261937	NM_182925.4	634	Gcc/Acc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398123121		P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	84	266	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55980402	55980402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	82	397	0	ENST00000263923.4:c.689C>T	p.Pro230Leu	p.P230L	ENST00000263923	NM_002253.2	230	cCg/cTg																																													NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	153	972	7	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	107	466	8	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	68	230	0	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48922000	48922000	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	76	372	0	ENST00000267163.4:c.539+1G>A		p.X180_splice	ENST00000267163	NM_000321.2	180																																														NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	135	420	2	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	187	660	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	32	418	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27057937	27057937	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	55	132	0	ENST00000324856.7:c.1650delC	p.Tyr551ThrfsTer68	p.Y551Tfs*68	ENST00000324856	NM_006015.4	549	Ccc/cc																																													NEWRECORD																																		
PARP1	142	MSKCC	GRCh37	1	226567647	226567647	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	61	332	1	ENST00000366794.5:c.1519delA	p.Ser507AlafsTer17	p.S507Afs*17	ENST00000366794	NM_001618.3	507	Agc/gc																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157099579	157099579	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	24	88	0	ENST00000346085.5:c.521del	p.Pro174ArgfsTer6	p.P174Rfs*6	ENST00000346085	NM_020732.3	172	gaC/ga																																													NEWRECORD																																		
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	112	535	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717699	89717699	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	58	313	0	ENST00000371953.3:c.724G>T	p.Glu242Ter	p.E242*	ENST00000371953	NM_000314.4	242	Gag/Tag																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	136	764	1	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187532710	187532710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1010116749		P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	125	497	2	ENST00000441802.2:c.9683del	p.Pro3228LeufsTer42	p.P3228Lfs*42	ENST00000441802	NM_005245.3	3228	cCt/ct																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30732957	30732957	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs727504421		P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	110	282	0	ENST00000295754.5:c.1570G>A	p.Asp524Asn	p.D524N	ENST00000295754	NM_003242.5	524	Gac/Aac																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	26	820	1	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt																																													NEWRECORD																																		
NTRK2	4915	MSKCC	GRCh37	9	87636210	87636210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	82	282	0	ENST00000277120.3:c.2375G>A	p.Arg792His	p.R792H	ENST00000277120		792	cGc/cAc																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157405954	157405954	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	103	352	0	ENST00000346085.5:c.2201del	p.Gly734AlafsTer11	p.G734Afs*11	ENST00000346085	NM_020732.3	732	ccG/cc																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65323367	65323367	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	96	342	0	ENST00000342505.4:c.1430T>C	p.Met477Thr	p.M477T	ENST00000342505	NM_002227.2	477	aTg/aCg																																													NEWRECORD																																		
RAD21	5885	MSKCC	GRCh37	8	117866581	117866581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	120	860	0	ENST00000297338.2:c.1064C>T	p.Pro355Leu	p.P355L	ENST00000297338	NM_006265.2	355	cCg/cTg																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37866710	37866710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	121	391	1	ENST00000269571.5:c.877G>A	p.Ala293Thr	p.A293T	ENST00000269571		293	Gcc/Acc																																													NEWRECORD																																		
PIK3CD	5293	MSKCC	GRCh37	1	9783245	9783245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	78	285	0	ENST00000377346.4:c.2489G>A	p.Arg830His	p.R830H	ENST00000377346	NM_005026.3	830	cGt/cAt																																													NEWRECORD																																		
JUN	3725	MSKCC	GRCh37	1	59248510	59248510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	65	460	0	ENST00000371222.2:c.233G>A	p.Arg78His	p.R78H	ENST00000371222	NM_002228.3	78	cGc/cAc																																													NEWRECORD																																		
FUBP1	8880	MSKCC	GRCh37	1	78432619	78432619	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	69	270	1	ENST00000370768.2:c.364C>T	p.Gln122Ter	p.Q122*	ENST00000370768	NM_003902.3	122	Cag/Tag																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156844407	156844407	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	83	937	0	ENST00000524377.1:c.1240A>C	p.Thr414Pro	p.T414P	ENST00000524377	NM_002529.3	414	Aca/Cca																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25523087	25523087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	85	304	0	ENST00000264709.3:c.98G>A	p.Arg33His	p.R33H	ENST00000264709	NM_175629.2	33	cGt/cAt																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198281604	198281604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	43	373	0	ENST00000335508.6:c.527C>T	p.Ala176Val	p.A176V	ENST00000335508	NM_012433.2	176	gCt/gTt																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202151187	202151187	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	82	429	0	ENST00000358485.4:c.1487A>G	p.Asp496Gly	p.D496G	ENST00000358485	NM_001080125.1	496	gAt/gGt																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212483963	212483963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	79	476	0	ENST00000342788.4:c.2240C>T	p.Pro747Leu	p.P747L	ENST00000342788	NM_005235.2	747	cCt/cTt																																													NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215645935	215645935	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	133	698	1	ENST00000260947.4:c.663G>T	p.Glu221Asp	p.E221D	ENST00000260947	NM_000465.2	221	gaG/gaT																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225346714	225346714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	135	509	0	ENST00000264414.4:c.1924C>T	p.Arg642Trp	p.R642W	ENST00000264414	NM_003590.4	642	Cgg/Tgg																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227659964	227659964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	116	364	1	ENST00000305123.5:c.3491C>T	p.Ala1164Val	p.A1164V	ENST00000305123	NM_005544.2	1164	gCc/gTc																																													NEWRECORD																																		
RHOA	387	MSKCC	GRCh37	3	49397692	49397692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	149	414	1	ENST00000418115.1:c.532G>A	p.Ala178Thr	p.A178T	ENST00000418115	NM_001664.2	178	Gct/Act																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49929253	49929253	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	184	769	0	ENST00000296474.3:c.3290A>G	p.Tyr1097Cys	p.Y1097C	ENST00000296474	NM_002447.2	1097	tAc/tGc																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134873081	134873081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	83	336	0	ENST00000398015.3:c.1385G>A	p.Gly462Asp	p.G462D	ENST00000398015	NM_004441.4	462	gGc/gAc																																													NEWRECORD																																		
SDHA	6389	MSKCC	GRCh37	5	236580	236580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			67	20	53	0	ENST00000264932.6:c.1298C>T	p.Pro433Leu	p.P433L	ENST00000264932	NM_004168.2	433	cCc/cTc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173462	112173462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	51	419	1	ENST00000257430.4:c.2171C>T	p.Ala724Val	p.A724V	ENST00000257430	NM_000038.5	724	gCa/gTa																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131951745	131951745	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	112	392	2	ENST00000265335.6:c.3087G>T	p.Glu1029Asp	p.E1029D	ENST00000265335		1029	gaG/gaT																																													NEWRECORD																																		
HIST1H3I	8354	MSKCC	GRCh37	6	27839726	27839726	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	299	1159	0	ENST00000328488.2:c.368A>C	p.Lys123Thr	p.K123T	ENST00000328488	NM_003533.2	123	aAa/aCa																																													NEWRECORD																																		
DAXX	1616	MSKCC	GRCh37	6	33288323	33288323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	83	244	0	ENST00000374542.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000374542	NM_001141970.1	362	cGg/cAg																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	94128963	94128963	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	105	448	0	ENST00000369303.4:c.97G>T	p.Val33Leu	p.V33L	ENST00000369303	NM_004440.3	33	Gta/Tta																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117674321	117674321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	71	376	1	ENST00000368508.3:c.4153C>T	p.Leu1385Phe	p.L1385F	ENST00000368508	NM_002944.2	1385	Ctt/Ttt																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157099840	157099840	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	128	572	0	ENST00000346085.5:c.777A>C	p.Gln259His	p.Q259H	ENST00000346085	NM_020732.3	259	caA/caC																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453127	140453127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	70	319	1	ENST00000288602.6:c.1808G>A	p.Arg603Gln	p.R603Q	ENST00000288602	NM_004333.4	603	cGa/cAa																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	152012228	152012228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	96	586	0	ENST00000262189.6:c.585G>T	p.Gln195His	p.Q195H	ENST00000262189	NM_170606.2	195	caG/caT																																													NEWRECORD																																		
JAK2	3717	MSKCC	GRCh37	9	5089853	5089853	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	26	309	0	ENST00000381652.3:c.2751C>A	p.Cys917Ter	p.C917*	ENST00000381652	NM_004972.3	917	tgC/tgA																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98229434	98229434	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	116	543	2	ENST00000331920.6:c.2524A>G	p.Lys842Glu	p.K842E	ENST00000331920	NM_000264.3	842	Aaa/Gaa																																													NEWRECORD																																		
KLF4	9314	MSKCC	GRCh37	9	110249393	110249393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	287	816	1	ENST00000374672.4:c.1180G>A	p.Ala394Thr	p.A394T	ENST00000374672	NM_004235.4	394	Gcc/Acc																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63829525	63829525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	83	314	1	ENST00000279873.7:c.1168G>A	p.Ala390Thr	p.A390T	ENST00000279873	NM_032199.2	390	Gct/Act																																													NEWRECORD																																		
HRAS	3265	MSKCC	GRCh37	11	533854	533854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	132	398	1	ENST00000311189.7:c.202C>T	p.Arg68Trp	p.R68W	ENST00000311189		68	Cgg/Tgg																																													NEWRECORD																																		
HRAS	3265	MSKCC	GRCh37	11	534270	534270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	37	457	1	ENST00000311189.7:c.53C>T	p.Ala18Val	p.A18V	ENST00000311189		18	gCg/gTg																																													NEWRECORD																																		
WT1	7490	MSKCC	GRCh37	11	32456377	32456377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	72	419	0	ENST00000332351.3:c.515C>T	p.Ala172Val	p.A172V	ENST00000332351	NM_024426.4	172	gCc/gTc																																													NEWRECORD																																		
EED	8726	MSKCC	GRCh37	11	85961378	85961378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	33	334	1	ENST00000263360.6:c.155G>A	p.Arg52His	p.R52H	ENST00000263360	NM_003797.3	52	cGc/cAc																																													NEWRECORD																																		
MRE11A	4361	MSKCC	GRCh37	11	94180453	94180453	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200085146		P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	190	524	1	ENST00000323929.3:c.1715G>A	p.Arg572Gln	p.R572Q	ENST00000323929	NM_005591.3	572	cGa/cAa																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	443492	443492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	73	355	1	ENST00000399788.2:c.1405C>T	p.Pro469Ser	p.P469S	ENST00000399788	NM_001042603.1	469	Ccg/Tcg																																													NEWRECORD																																		
IGF1	3479	MSKCC	GRCh37	12	102813316	102813316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	132	434	1	ENST00000307046.8:c.373C>T	p.Arg125Cys	p.R125C	ENST00000307046	NM_001111285.1	125	Cgc/Tgc																																													NEWRECORD																																		
SH2B3	10019	MSKCC	GRCh37	12	111856623	111856623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	79	193	1	ENST00000341259.2:c.674G>A	p.Arg225His	p.R225H	ENST00000341259	NM_005475.2	225	cGc/cAc																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133241993	133241993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	70	260	1	ENST00000320574.5:c.2363C>T	p.Ala788Val	p.A788V	ENST00000320574	NM_006231.2	788	gCg/gTg																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28877386	28877386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	102	298	0	ENST00000282397.4:c.3935C>T	p.Ala1312Val	p.A1312V	ENST00000282397	NM_002019.4	1312	gCt/gTt																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32936658	32936658	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	74	349	0	ENST00000380152.3:c.7806-2A>G		p.X2602_splice	ENST00000380152		2602																																														NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110434934	110434934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	150	540	0	ENST00000375856.3:c.3467C>T	p.Thr1156Met	p.T1156M	ENST00000375856	NM_003749.2	1156	aCg/aTg																																													NEWRECORD																																		
RAD51B	5890	MSKCC	GRCh37	14	68292236	68292236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	114	527	0	ENST00000487270.1:c.140G>A	p.Arg47Gln	p.R47Q	ENST00000487270	NM_133509.3	47	cGa/cAa																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42000388	42000388	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	156	779	1	ENST00000219905.7:c.2407T>A	p.Ser803Thr	p.S803T	ENST00000219905	NM_001164273.1	803	Tct/Act																																													NEWRECORD																																		
IDH2	3418	MSKCC	GRCh37	15	90631706	90631706	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749096156		P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	125	402	0	ENST00000330062.3:c.563G>A	p.Arg188Gln	p.R188Q	ENST00000330062	NM_002168.2	188	cGg/cAg																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3779253	3779253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	60	241	1	ENST00000262367.5:c.5795C>T	p.Thr1932Met	p.T1932M	ENST00000262367	NM_004380.2	1932	aCg/aTg																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89346259	89346259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	76	390	1	ENST00000301030.4:c.6691G>A	p.Ala2231Thr	p.A2231T	ENST00000301030	NM_001256183.1	2231	Gcc/Acc																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	12016616	12016616	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	128	438	0	ENST00000353533.5:c.752G>C	p.Ser251Thr	p.S251T	ENST00000353533	NM_003010.3	251	aGt/aCt																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78820340	78820340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	94	365	0	ENST00000306801.3:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000306801	NM_020761.2	427	cGa/cAa																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5223014	5223014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	17	242	2	ENST00000357368.4:c.2789G>A	p.Gly930Asp	p.G930D	ENST00000357368	NM_002850.3	930	gGc/gAc																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10251867	10251867	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	78	465	0	ENST00000340748.4:c.3262-2A>G		p.X1088_splice	ENST00000340748		1088																																														NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10252757	10252757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	64	245	0	ENST00000340748.4:c.3208G>A	p.Glu1070Lys	p.E1070K	ENST00000340748		1070	Gag/Aag																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15288795	15288795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			60	16	85	0	ENST00000263388.2:c.3944G>A	p.Cys1315Tyr	p.C1315Y	ENST00000263388	NM_000435.2	1315	tGc/tAc																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41727812	41727812	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	181	634	0	ENST00000301178.4:c.437A>G	p.Glu146Gly	p.E146G	ENST00000301178	NM_021913.4	146	gAa/gGa																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50905597	50905597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	51	716	1	ENST00000440232.2:c.725C>T	p.Ala242Val	p.A242V	ENST00000440232	NM_002691.3	242	gCg/gTg																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70342602	70342602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	136	253	0	ENST00000374080.3:c.1363C>T	p.Arg455Trp	p.R455W	ENST00000374080		455	Cgg/Tgg																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70345554	70345554	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	143	338	0	ENST00000374080.3:c.2413A>G	p.Thr805Ala	p.T805A	ENST00000374080		805	Aca/Gca																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63526199	63526202	+	frameshift_variant	Frame_Shift_Del	DEL	GCTT	GCTT	-			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	112	361	0	ENST00000307078.5:c.2424_2427del	p.Ser809MetfsTer51	p.S809Mfs*51	ENST00000307078	NM_004655.3	808	gcAAGC/gc																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151853400	151853400	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	62	240	0	ENST00000262189.6:c.11702del	p.Pro3901LeufsTer33	p.P3901Lfs*33	ENST00000262189	NM_170606.2	3901	cCt/ct																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112177265	112177265	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	46	253	1	ENST00000257430.4:c.5978del	p.Pro1993LeufsTer51	p.P1993Lfs*51	ENST00000257430	NM_000038.5	1992	Ccc/cc																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49425925	49425926	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	158	645	0	ENST00000301067.7:c.12562dup	p.Val4188GlyfsTer146	p.V4188Gfs*146	ENST00000301067	NM_003482.3	4188	gtt/gGtt																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76763860	76763860	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	134	305	0	ENST00000373344.5:c.7448del	p.Asn2483IlefsTer17	p.N2483Ifs*17	ENST00000373344	NM_000489.3	2483	aAt/at																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47698153	47698155	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	96	431	0	ENST00000233146.2:c.1715_1717del	p.Glu572del	p.E572del	ENST00000233146	NM_000251.2	571	GAA/-																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66356423	66356423	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	65	275	0	ENST00000273854.3:c.1074del	p.Ser359LeufsTer63	p.S359Lfs*63	ENST00000273854	NM_004439.5	358	ccC/cc																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15280969	15280970	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	86	452	0	ENST00000263388.2:c.5126dup	p.Glu1711Ter	p.E1711*	ENST00000263388	NM_000435.2	1709	aag/aaAg																																													NEWRECORD																																		
CDKN2C	1031	MSKCC	GRCh37	1	51436083	51436084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	97	349	0	ENST00000262662.1:c.49dup	p.Asp17GlyfsTer7	p.D17Gfs*7	ENST00000262662		15	agg/aGgg																																													NEWRECORD																																		
MYCL1	4610	MSKCC	GRCh37	1	40363417	40363418	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	101	330	0	ENST00000397332.2:c.811_812del	p.Asp271CysfsTer8	p.D271Cfs*8	ENST00000397332	NM_001033082.2	271	GAt/t																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023252	27023255	+	frameshift_variant	Frame_Shift_Del	DEL	CCGC	CCGC	-			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	116	260	0	ENST00000324856.7:c.361_364del	p.Pro121AlafsTer110	p.P121Afs*110	ENST00000324856	NM_006015.4	120	CCGCcc/cc																																													NEWRECORD																																		
MITF	4286	MSKCC	GRCh37	3	70014243	70014243	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	215	773	0	ENST00000352241.4:c.1411delA	p.Met471TrpfsTer9	p.M471Wfs*9	ENST00000352241	NM_198159.2	469	acA/ac																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138433482	138433482	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	75	402	1	ENST00000289153.2:c.1130del	p.Asn377MetfsTer35	p.N377Mfs*35	ENST00000289153	NM_006219.2	377	aAt/at																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0010069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	223	412	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	204	354	0	ENST00000206249.3:c.1607T>G	p.Leu536Arg	p.L536R	ENST00000206249	NM_000125.3	536	cTc/cGc																																													NEWRECORD																																		
SOX2	6657	MSKCC	GRCh37	3	181430758	181430758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	208	357	0	ENST00000325404.1:c.610G>A	p.Ala204Thr	p.A204T	ENST00000325404	NM_003106.3	204	Gcc/Acc																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68853194	68853194	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	262	496	0	ENST00000261769.5:c.1577G>A	p.Trp526Ter	p.W526*	ENST00000261769	NM_004360.3	526	tGg/tAg																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36259249	36259250	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	100	215	0	ENST00000300305.3:c.241dup	p.Val81GlyfsTer57	p.V81Gfs*57	ENST00000300305		81	gtg/gGtg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0014755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	152	258	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	273	625	1	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134670327	134670327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	203	336	2	ENST00000398015.3:c.238C>T	p.Arg80Trp	p.R80W	ENST00000398015	NM_004441.4	80	Cgg/Tgg																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156837973	156837973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1393	135	653	0	ENST00000524377.1:c.506G>A	p.Gly169Glu	p.G169E	ENST00000524377	NM_002529.3	169	gGa/gAa																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120458399	120458399	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	172	452	0	ENST00000256646.2:c.6946G>T	p.Ala2316Ser	p.A2316S	ENST00000256646	NM_024408.3	2316	Gcc/Tcc																																													NEWRECORD																																		
MCL1	4170	MSKCC	GRCh37	1	150550932	150550932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	93	307	1	ENST00000369026.2:c.724G>A	p.Asp242Asn	p.D242N	ENST00000369026	NM_021960.4	242	Gat/Aat																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42032396	42032396	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	95	432	1	ENST00000219905.7:c.4580C>G	p.Pro1527Arg	p.P1527R	ENST00000219905	NM_001164273.1	1527	cCa/cGa																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88678581	88678581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	93	298	1	ENST00000360948.2:c.955C>A	p.His319Asn	p.H319N	ENST00000360948	NM_001012338.2	319	Cac/Aac																																													NEWRECORD																																		
PDPK1	5170	MSKCC	GRCh37	16	2636803	2636803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	120	629	1	ENST00000342085.4:c.1252G>A	p.Asp418Asn	p.D418N	ENST00000342085	NM_002613.4	418	Gat/Aat																																													NEWRECORD																																		
STAT5A	6776	MSKCC	GRCh37	17	40456406	40456406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	152	637	0	ENST00000345506.4:c.1216C>A	p.His406Asn	p.H406N	ENST00000345506	NM_003152.3	406	Cac/Aac																																													NEWRECORD																																		
RAF1	5894	MSKCC	GRCh37	3	12626417	12626417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	260	538	0	ENST00000251849.4:c.1732C>T	p.Pro578Ser	p.P578S	ENST00000251849	NM_002880.3	578	Ccc/Tcc																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151875052	151875053	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	146	191	1	ENST00000262189.6:c.7485dup	p.Glu2496ArgfsTer29	p.E2496Rfs*29	ENST00000262189	NM_170606.2	2495	-/A																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16262612	16262612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			278	61	1028	0	ENST00000375759.3:c.9877G>A	p.Val3293Met	p.V3293M	ENST00000375759	NM_015001.2	3293	Gtg/Atg																																													NEWRECORD																																		
SDHC	6391	MSKCC	GRCh37	1	161284202	161284202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			409	123	1580	0	ENST00000367975.2:c.7G>A	p.Ala3Thr	p.A3T	ENST00000367975	NM_003001.3	3	Gcg/Acg																																													NEWRECORD																																		
AKT3	10000	MSKCC	GRCh37	1	243736302	243736302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			597	88	1453	0	ENST00000263826.5:c.745C>A	p.Arg249Ser	p.R249S	ENST00000263826	NM_005465.4	249	Cgt/Agt																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29443577	29443577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			279	92	786	0	ENST00000389048.3:c.3640C>T	p.Arg1214Cys	p.R1214C	ENST00000389048	NM_004304.4	1214	Cgc/Tgc																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29498063	29498063	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116202066		P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			526	161	1769	0	ENST00000389048.3:c.1943C>T	p.Thr648Ile	p.T648I	ENST00000389048	NM_004304.4	648	aCa/aTa																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52668617	52668617	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	144	1447	0	ENST00000394830.3:c.1301+1G>C		p.X434_splice	ENST00000394830	NM_018313.4	434																																														NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142218528	142218528	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			653	101	1577	1	ENST00000350721.4:c.5321G>T	p.Arg1774Ile	p.R1774I	ENST00000350721	NM_001184.3	1774	aGa/aTa																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106155475	106155475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	129	1066	0	ENST00000380013.4:c.376G>T	p.Gly126Trp	p.G126W	ENST00000380013	NM_001127208.2	126	Ggg/Tgg																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106164836	106164836	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	114	985	1	ENST00000380013.4:c.3704G>C	p.Gly1235Ala	p.G1235A	ENST00000380013	NM_001127208.2	1235	gGa/gCa																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187527280	187527280	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			238	123	944	0	ENST00000441802.2:c.10294G>T	p.Asp3432Tyr	p.D3432Y	ENST00000441802	NM_005245.3	3432	Gat/Tat																																													NEWRECORD																																		
PAX5	5079	MSKCC	GRCh37	9	36882060	36882060	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	144	1531	0	ENST00000358127.4:c.953A>T	p.His318Leu	p.H318L	ENST00000358127	NM_001280556.1	318	cAc/cTc																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108196900	108196900	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			333	101	960	0	ENST00000278616.4:c.6923C>G	p.Ala2308Gly	p.A2308G	ENST00000278616	NM_000051.3	2308	gCc/gGc																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	417038	417038	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	90	1297	0	ENST00000399788.2:c.3512G>T	p.Ser1171Ile	p.S1171I	ENST00000399788	NM_001042603.1	1171	aGt/aTt																																													NEWRECORD																																		
CCND2	894	MSKCC	GRCh37	12	4383345	4383345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	69	1178	1	ENST00000261254.3:c.139G>A	p.Val47Met	p.V47M	ENST00000261254	NM_001759.3	47	Gtg/Atg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49448141	49448141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	160	1286	0	ENST00000301067.7:c.459G>T	p.Glu153Asp	p.E153D	ENST00000301067	NM_003482.3	153	gaG/gaT																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3781272	3781272	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	106	1110	0	ENST00000262367.5:c.5093A>T	p.Gln1698Leu	p.Q1698L	ENST00000262367	NM_004380.2	1698	cAg/cTg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			314	168	1624	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29509525	29509525	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	110	944	1	ENST00000358273.4:c.731-1G>T		p.X244_splice	ENST00000358273	NM_001042492.2	244																																														NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59770850	59770850	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			597	164	1700	0	ENST00000259008.2:c.2516G>C	p.Trp839Ser	p.W839S	ENST00000259008	NM_032043.2	839	tGg/tCg																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11132399	11132399	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			281	150	1587	0	ENST00000344626.4:c.2617-2A>C		p.X873_splice	ENST00000344626	NM_003072.3	873																																														NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31024638	31024638	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs191965193		P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			411	165	1622	0	ENST00000375687.4:c.4123G>T	p.Gly1375Trp	p.G1375W	ENST00000375687	NM_015338.5	1375	Ggg/Tgg																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225338988	225338989	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			634	34	1690	0	ENST00000264414.4:c.2280_2281insA	p.Arg761ThrfsTer34	p.R761Tfs*34	ENST00000264414	NM_003590.4	760	-/A																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99440129	99440129	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	246	1278	0	ENST00000268035.6:c.1101delG	p.Asn368IlefsTer17	p.N368Ifs*17	ENST00000268035	NM_000875.3	366	cGg/cg																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3817775	3817776	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			703	199	2475	0	ENST00000262367.5:c.3194_3195dupGT	p.Ser1066ValfsTer34	p.S1066Vfs*34	ENST00000262367	NM_004380.2	1065	-/GT																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63533910	63533910	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	88	828	0	ENST00000307078.5:c.1244delA	p.Glu415GlyfsTer43	p.E415Gfs*43	ENST00000307078	NM_004655.3	415	gAg/gg																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9546737	9546738	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	88	1020	0	ENST00000353224.5:c.1284_1285delCCinsAA	p.His429Asn	p.H429N	ENST00000353224	NM_177990.2	428	tcCCat/tcAAat																																													NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0002324-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	85	248	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53240732	53240732	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002324-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			828	158	536	0	ENST00000375401.3:c.1348G>C	p.Gly450Arg	p.G450R	ENST00000375401	NM_004187.3	450	Ggc/Cgc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002324-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			639	106	321	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000412-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			353	27	369	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180057281	180057281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142252978		P-0005111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	108	394	1	ENST00000261937.6:c.457G>A	p.Ala153Thr	p.A153T	ENST00000261937	NM_182925.4	153	Gcc/Acc																																													NEWRECORD																																		
PLK2	10769	MSKCC	GRCh37	5	57753205	57753205	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0005111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	57	229	0	ENST00000274289.3:c.811T>C	p.Tyr271His	p.Y271H	ENST00000274289	NM_006622.3	271	Tat/Cat																																													NEWRECORD																																		
PMS2	5395	MSKCC	GRCh37	7	6035245	6035245	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	136	384	0	ENST00000265849.7:c.823C>T	p.Gln275Ter	p.Q275*	ENST00000265849	NM_000535.5	275	Caa/Taa																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56489478	56489478	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	80	349	0	ENST00000267101.3:c.1943T>C	p.Val648Ala	p.V648A	ENST00000267101	NM_001982.3	648	gTg/gCg																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061140	38061141	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCGCTT			P-0005111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	12	34	0	ENST00000250448.2:c.843_848dup	p.Ser282_Gly283dup	p.S282_G283dup	ENST00000250448	NM_004496.3	282	ggg/ggAAGCGGg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	296	424	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
NKX2-1	7080	MSKCC	GRCh37	14	36988189	36988189	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0008176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	15	127	0	ENST00000354822.5:c.463+1G>A		p.X155_splice	ENST00000354822	NM_001079668.2	155																																														NEWRECORD																																		
NF2	4771	MSKCC	GRCh37	22	30069257	30069257	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0008176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	51	274	0	ENST00000338641.4:c.1123-1G>C		p.X375_splice	ENST00000338641	NM_000268.3	375																																														NEWRECORD																																		
NKX2-1	7080	MSKCC	GRCh37	14	36987148	36987149	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0008176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	23	193	0	ENST00000354822.5:c.539_540dup	p.Lys181AlafsTer48	p.K181Afs*48	ENST00000354822	NM_001079668.2	180	-/GC																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	176	141	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	75	124	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	174	303	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	210	266	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	212	213	1	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49447772	49447773	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	174	151	0	ENST00000301067.7:c.661dup	p.Ala221GlyfsTer13	p.A221Gfs*13	ENST00000301067	NM_003482.3	221	gct/gGct																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	188	249	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52637555	52637555	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	221	337	0	ENST00000394830.3:c.2761C>T	p.Arg921Ter	p.R921*	ENST00000394830	NM_018313.4	921	Cga/Tga																																													NEWRECORD																																		
MEF2B	100271849	MSKCC	GRCh37	19	19256679	19256679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	182	170	1	ENST00000162023.5:c.1034G>A	p.Arg345Gln	p.R345Q	ENST00000162023		345	cGg/cAg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27088788	27088788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	279	241	4	ENST00000324856.7:c.2402del	p.Gly801ValfsTer32	p.G801Vfs*32	ENST00000324856	NM_006015.4	799	caG/ca																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	115	159	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27107099	27107099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	130	139	0	ENST00000324856.7:c.6710C>T	p.Ala2237Val	p.A2237V	ENST00000324856	NM_006015.4	2237	gCg/gTg																																													NEWRECORD																																		
IKBKE	9641	MSKCC	GRCh37	1	206666384	206666384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	198	215	0	ENST00000367120.3:c.1864C>T	p.Arg622Cys	p.R622C	ENST00000367120	NM_014002.3	622	Cgc/Tgc																																													NEWRECORD																																		
PARP1	142	MSKCC	GRCh37	1	226568861	226568861	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150379323		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	319	281	0	ENST00000366794.5:c.1208G>A	p.Arg403Gln	p.R403Q	ENST00000366794	NM_001618.3	403	cGg/cAg																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25497949	25497949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	304	169	0	ENST00000264709.3:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000264709	NM_175629.2	167	cGg/cAg																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47635622	47635622	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	265	296	0	ENST00000233146.2:c.294T>A	p.Tyr98Ter	p.Y98*	ENST00000233146	NM_000251.2	98	taT/taA																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202141631	202141631	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs17860424		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	518	258	1	ENST00000358485.4:c.919C>T	p.Arg307Trp	p.R307W	ENST00000358485	NM_001080125.1	307	Cgg/Tgg																																													NEWRECORD																																		
INHA	3623	MSKCC	GRCh37	2	220439805	220439805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	410	334	0	ENST00000243786.2:c.658C>T	p.Arg220Trp	p.R220W	ENST00000243786	NM_002191.3	220	Cgg/Tgg																																													NEWRECORD																																		
MITF	4286	MSKCC	GRCh37	3	69990402	69990402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	123	234	0	ENST00000352241.4:c.682G>A	p.Asp228Asn	p.D228N	ENST00000352241	NM_198159.2	228	Gat/Aat																																													NEWRECORD																																		
SHQ1	55164	MSKCC	GRCh37	3	72842124	72842124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	206	309	1	ENST00000325599.8:c.1124C>T	p.Ala375Val	p.A375V	ENST00000325599	NM_018130.2	375	gCg/gTg																																													NEWRECORD																																		
GSK3B	2932	MSKCC	GRCh37	3	119635000	119635000	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201787969		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	172	246	0	ENST00000316626.5:c.499C>T	p.Arg167Ter	p.R167*	ENST00000316626		167	Cga/Tga																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55156639	55156639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	217	228	0	ENST00000257290.5:c.3040G>A	p.Ala1014Thr	p.A1014T	ENST00000257290	NM_006206.4	1014	Gct/Act																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187532867	187532867	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762890230		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	290	265	1	ENST00000441802.2:c.9526G>A	p.Glu3176Lys	p.E3176K	ENST00000441802	NM_005245.3	3176	Gaa/Aaa																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86629103	86629103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753769946		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	180	227	0	ENST00000274376.6:c.848G>A	p.Arg283His	p.R283H	ENST00000274376	NM_002890.2	283	cGt/cAt																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131973851	131973851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	203	231	0	ENST00000265335.6:c.3554G>A	p.Arg1185Gln	p.R1185Q	ENST00000265335		1185	cGa/cAa																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180051024	180051024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	257	252	0	ENST00000261937.6:c.1459C>T	p.Arg487Cys	p.R487C	ENST00000261937	NM_182925.4	487	Cgt/Tgt																																													NEWRECORD																																		
CDKN1A	1026	MSKCC	GRCh37	6	36651972	36651972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	224	194	0	ENST00000244741.5:c.94C>T	p.Arg32Cys	p.R32C	ENST00000244741	NM_000389.4	32	Cgc/Tgc																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	93979281	93979281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	311	431	0	ENST00000369303.4:c.1547G>A	p.Arg516Gln	p.R516Q	ENST00000369303	NM_004440.3	516	cGg/cAg																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	150001106	150001106	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	227	370	0	ENST00000253339.5:c.2498A>G	p.Asn833Ser	p.N833S	ENST00000253339		833	aAt/aGt																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968260	2968260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	256	250	0	ENST00000396946.4:c.1726C>T	p.Arg576Cys	p.R576C	ENST00000396946	NM_032415.4	576	Cgc/Tgc																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116380020	116380020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	286	319	1	ENST00000397752.3:c.1409C>T	p.Ser470Leu	p.S470L	ENST00000397752	NM_000245.2	470	tCa/tTa																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128843429	128843429	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs115491500		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	189	158	0	ENST00000249373.3:c.536C>T	p.Thr179Met	p.T179M	ENST00000249373	NM_005631.4	179	aCg/aTg																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151845813	151845813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	254	330	0	ENST00000262189.6:c.13199G>A	p.Arg4400Gln	p.R4400Q	ENST00000262189	NM_170606.2	4400	cGg/cAg																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55371986	55371986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	22	140	0	ENST00000297316.4:c.676C>T	p.Pro226Ser	p.P226S	ENST00000297316	NM_022454.3	226	Ccg/Tcg																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145739068	145739068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	194	189	0	ENST00000428558.2:c.2087G>A	p.Arg696His	p.R696H	ENST00000428558	NM_004260.3	696	cGt/cAt																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98215787	98215787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	291	269	0	ENST00000331920.6:c.3422C>T	p.Ala1141Val	p.A1141V	ENST00000331920	NM_000264.3	1141	gCg/gTg																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98240362	98240362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	241	210	1	ENST00000331920.6:c.1322G>A	p.Arg441His	p.R441H	ENST00000331920	NM_000264.3	441	cGc/cAc																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139410064	139410064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	268	247	2	ENST00000277541.6:c.1774C>T	p.Arg592Cys	p.R592C	ENST00000277541	NM_017617.3	592	Cgc/Tgc																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63852655	63852655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	272	264	1	ENST00000279873.7:c.3433G>A	p.Ala1145Thr	p.A1145T	ENST00000279873	NM_032199.2	1145	Gct/Act																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925330	114925330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	379	324	0	ENST00000543371.1:c.1408G>A	p.Val470Ile	p.V470I	ENST00000543371	NM_001198531.1	470	Gtt/Att																																													NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64129008	64129008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	230	251	1	ENST00000334205.4:c.638C>T	p.Thr213Met	p.T213M	ENST00000334205	NM_003942.2	213	aCg/aTg																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	402294	402294	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	307	375	0	ENST00000399788.2:c.4497G>T	p.Lys1499Asn	p.K1499N	ENST00000399788	NM_001042603.1	1499	aaG/aaT																																													NEWRECORD																																		
SH2B3	10019	MSKCC	GRCh37	12	111856065	111856065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	183	159	2	ENST00000341259.2:c.116G>A	p.Arg39Gln	p.R39Q	ENST00000341259	NM_005475.2	39	cGg/cAg																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73334690	73334690	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	222	287	0	ENST00000377767.4:c.2770C>T	p.Arg924Ter	p.R924*	ENST00000377767	NM_014953.3	924	Cga/Tga																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67477184	67477184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	173	198	0	ENST00000327367.4:c.991G>A	p.Val331Ile	p.V331I	ENST00000327367	NM_005902.3	331	Gtc/Atc																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99500474	99500474	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45475702		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	193	212	0	ENST00000268035.6:c.3907G>A	p.Val1303Ile	p.V1303I	ENST00000268035	NM_000875.3	1303	Gtc/Atc																																													NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	359984	359984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	312	350	0	ENST00000262320.3:c.1105C>T	p.Pro369Ser	p.P369S	ENST00000262320	NM_003502.3	369	Cct/Tct																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2136799	2136799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	353	309	0	ENST00000219476.3:c.4916G>A	p.Arg1639His	p.R1639H	ENST00000219476	NM_000548.3	1639	cGc/cAc																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67116167	67116167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	294	237	0	ENST00000412916.2:c.451C>T	p.Arg151Cys	p.R151C	ENST00000412916		151	Cgc/Tgc																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72984762	72984762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	362	351	1	ENST00000268489.5:c.2822C>T	p.Ser941Leu	p.S941L	ENST00000268489	NM_006885.3	941	tCg/tTg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	132	147	0	ENST00000269305.4:c.523C>T	p.Arg175Cys	p.R175C	ENST00000269305	NM_001126112.2	175	Cgc/Tgc																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16024477	16024477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	308	245	0	ENST00000268712.3:c.1741C>T	p.Arg581Cys	p.R581C	ENST00000268712	NM_006311.3	581	Cgt/Tgt																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29665144	29665144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	46	196	0	ENST00000358273.4:c.6806G>A	p.Arg2269His	p.R2269H	ENST00000358273	NM_001042492.2	2269	cGt/cAt																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41256956	41256956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	173	265	0	ENST00000357654.3:c.230C>T	p.Thr77Met	p.T77M	ENST00000357654	NM_007294.3	77	aCg/aTg																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78796926	78796926	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	232	231	0	ENST00000306801.3:c.1039T>C	p.Phe347Leu	p.F347L	ENST00000306801	NM_020761.2	347	Ttt/Ctt																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78938101	78938101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	313	289	2	ENST00000306801.3:c.3979G>A	p.Val1327Met	p.V1327M	ENST00000306801	NM_020761.2	1327	Gtg/Atg																																													NEWRECORD																																		
MALT1	10892	MSKCC	GRCh37	18	56377265	56377265	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	236	350	2	ENST00000348428.3:c.886C>T	p.Arg296Ter	p.R296*	ENST00000348428	NM_006785.3	296	Cga/Tga																																													NEWRECORD																																		
TCF3	6929	MSKCC	GRCh37	19	1627375	1627375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	311	242	4	ENST00000344749.5:c.349G>A	p.Val117Met	p.V117M	ENST00000344749	NM_001136139.2	117	Gtg/Atg																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10246522	10246522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	170	137	0	ENST00000340748.4:c.4615G>A	p.Val1539Met	p.V1539M	ENST00000340748		1539	Gtg/Atg																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15284979	15284979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	194	187	0	ENST00000263388.2:c.4636C>T	p.Arg1546Cys	p.R1546C	ENST00000263388	NM_000435.2	1546	Cgc/Tgc																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15288790	15288790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	11	41	0	ENST00000263388.2:c.3949C>A	p.Pro1317Thr	p.P1317T	ENST00000263388	NM_000435.2	1317	Cca/Aca																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15289746	15289746	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146149484		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	225	166	3	ENST00000263388.2:c.3725G>A	p.Arg1242His	p.R1242H	ENST00000263388	NM_000435.2	1242	cGc/cAc																																													NEWRECORD																																		
CCNE1	898	MSKCC	GRCh37	19	30312660	30312660	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146187350		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	224	294	2	ENST00000262643.3:c.641C>T	p.Ala214Val	p.A214V	ENST00000262643	NM_001238.2	214	gCg/gTg																																													NEWRECORD																																		
SRC	6714	MSKCC	GRCh37	20	36024670	36024670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	260	270	0	ENST00000358208.4:c.659G>A	p.Arg220His	p.R220H	ENST00000358208		220	cGc/cAc																																													NEWRECORD																																		
NCOA3	8202	MSKCC	GRCh37	20	46264652	46264652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	311	307	0	ENST00000371998.3:c.1522G>A	p.Ala508Thr	p.A508T	ENST00000371998		508	Gca/Aca																																													NEWRECORD																																		
SMARCB1	6598	MSKCC	GRCh37	22	24159109	24159109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	237	201	0	ENST00000263121.7:c.781C>T	p.Arg261Cys	p.R261C	ENST00000263121	NM_003073.3	261	Cgc/Tgc																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63410486	63410486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	306	138	0	ENST00000330258.3:c.2681G>A	p.Arg894His	p.R894H	ENST00000330258	NM_152424.3	894	cGc/cAc																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42799098	42799098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	522	191	0	ENST00000575354.2:c.4586delC	p.Pro1529LeufsTer91	p.P1529Lfs*91	ENST00000575354	NM_015125.3	1528	Ccc/cc																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	54	284	0	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133760023	133760024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	249	248	0	ENST00000318560.5:c.2352dup	p.Arg785GlnfsTer7	p.R785Qfs*7	ENST00000318560	NM_005157.4	782	-/C																																													NEWRECORD																																		
GREM1	26585	MSKCC	GRCh37	15	33023096	33023096	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	275	330	1	ENST00000300177.4:c.207del	p.Glu71ArgfsTer13	p.E71Rfs*13	ENST00000300177	NM_001191322.1	69	Ccc/cc																																													NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	345	513	3	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142255005	142255005	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	73	238	0	ENST00000350721.4:c.3764delT	p.Leu1255TyrfsTer7	p.L1255Yfs*7	ENST00000350721	NM_001184.3	1255	tTa/ta																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116339744	116339746	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	246	284	0	ENST00000397752.3:c.611_613del	p.Ser204del	p.S204del	ENST00000397752	NM_000245.2	202	aaTTCt/aat																																													NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215646085	215646085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	193	291	0	ENST00000260947.4:c.513del	p.Asp172MetfsTer40	p.D172Mfs*40	ENST00000260947	NM_000465.2	171	aaA/aa																																													NEWRECORD																																		
MRE11A	4361	MSKCC	GRCh37	11	94203691	94203691	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	203	301	1	ENST00000323929.3:c.963del	p.Phe321LeufsTer8	p.F321Lfs*8	ENST00000323929	NM_005591.3	321	ttT/tt																																													NEWRECORD																																		
CDKN1B	1027	MSKCC	GRCh37	12	12870820	12870821	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	108	102	0	ENST00000228872.4:c.49dup	p.Asp17GlyfsTer108	p.D17Gfs*108	ENST00000228872	NM_004064.3	16	atg/atGg																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152265366	152265367	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	200	216	0	ENST00000206249.3:c.823dup	p.Glu275GlyfsTer5	p.E275Gfs*5	ENST00000206249	NM_000125.3	273	-/G																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42032388	42032388	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	478	461	0	ENST00000219905.7:c.4575delA	p.Lys1525AsnfsTer18	p.K1525Nfs*18	ENST00000219905	NM_001164273.1	1524	gcA/gc																																													NEWRECORD																																		
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	313	304	3	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0008845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	109	301	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0008845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	283	807	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1275	232	806	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15952235	15952235	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	187	513	0	ENST00000268712.3:c.6460C>T	p.Gln2154Ter	p.Q2154*	ENST00000268712	NM_006311.3	2154	Cag/Tag																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36206861	36206861	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	112	284	0	ENST00000300305.3:c.651del	p.Ser218AlafsTer19	p.S218Afs*19	ENST00000300305		217	ggG/gg																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36252994	36252995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0008845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	98	290	0	ENST00000300305.3:c.366_367dupGG	p.Asp123GlyfsTer11	p.D123Gfs*11	ENST00000300305		123	gat/gGGat																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0014116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	43	554	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	32	256	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0014116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	18	400	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0014116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	47	715	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																													NEWRECORD																																		
IDH2	3418	MSKCC	GRCh37	15	90631838	90631838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913503		P-0014116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	47	574	0	ENST00000330062.3:c.515G>A	p.Arg172Lys	p.R172K	ENST00000330062	NM_002168.2	172	aGg/aAg																																													NEWRECORD																																		
PMS2	5395	MSKCC	GRCh37	7	6042266	6042266	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs587781913		P-0014116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	39	455	0	ENST00000265849.7:c.355G>A	p.Asp119Asn	p.D119N	ENST00000265849	NM_000535.5	119	Gat/Aat																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	64	762	1	ENST00000269305.4:c.809T>G	p.Phe270Cys	p.F270C	ENST00000269305	NM_001126112.2	270	tTt/tGt																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9892310	9892310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	35	333	0	ENST00000330684.3:c.2180C>T	p.Ala727Val	p.A727V	ENST00000330684	NM_001134407.1	727	gCt/gTt																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5244487	5244487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	21	164	0	ENST00000357368.4:c.995C>T	p.Pro332Leu	p.P332L	ENST00000357368	NM_002850.3	332	cCc/cTc																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41551061	41551061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	98	916	0	ENST00000263253.7:c.3205G>A	p.Asp1069Asn	p.D1069N	ENST00000263253	NM_001429.3	1069	Gat/Aat																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89521763	89521763	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	33	334	0	ENST00000336596.2:c.2840C>G	p.Ser947Cys	p.S947C	ENST00000336596	NM_005233.5	947	tCc/tGc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175216	112175217	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	36	299	0	ENST00000257430.4:c.3929dup	p.Ile1311AspfsTer4	p.I1311Dfs*4	ENST00000257430	NM_000038.5	1309	gaa/gAaa																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002327-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			355	67	449	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002327-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			168	40	215	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002327-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			525	138	284	0	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106509436	106509436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002327-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			568	117	452	1	ENST00000359195.3:c.1430G>A	p.Arg477His	p.R477H	ENST00000359195	NM_002649.2	477	cGt/cAt																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43597976	43597976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002327-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			880	217	467	1	ENST00000355710.3:c.524G>A	p.Arg175His	p.R175H	ENST00000355710	NM_020975.4	175	cGc/cAc																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118377271	118377271	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002327-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			609	119	508	0	ENST00000534358.1:c.10664G>T	p.Gly3555Val	p.G3555V	ENST00000534358	NM_005933.3	3555	gGc/gTc																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1207076	1207076	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002327-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			656	166	370	0	ENST00000326873.7:c.164T>C	p.Leu55Pro	p.L55P	ENST00000326873	NM_000455.4	55	cTg/cCg																																													NEWRECORD																																		
BMPR1A	657	MSKCC	GRCh37	10	88659631	88659632	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002327-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			296	48	395	0	ENST00000372037.3:c.419dup	p.Val141CysfsTer8	p.V141Cfs*8	ENST00000372037	NM_004329.2	138	-/C																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89692920	89692921	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	81	353	0	ENST00000371953.3:c.405dupA	p.Cys136MetfsTer44	p.C136Mfs*44	ENST00000371953	NM_000314.4	135	ata/atAa																																													NEWRECORD																																		
KLF4	9314	MSKCC	GRCh37	9	110249717	110249717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	111	337	0	ENST00000374672.4:c.958G>A	p.Gly320Ser	p.G320S	ENST00000374672	NM_004235.4	320	Ggt/Agt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0007335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	123	428	0	ENST00000269305.4:c.920-1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																														NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119932	70119932	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	405	374	0	ENST00000245479.2:c.934C>T	p.Gln312Ter	p.Q312*	ENST00000245479	NM_000346.3	312	Cag/Tag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0006093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	792	728	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0006093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	312	565	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70426847	70426847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	536	612	1	ENST00000373644.4:c.4507C>T	p.Arg1503Trp	p.R1503W	ENST00000373644	NM_030625.2	1503	Cgg/Tgg																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9857017	9857017	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	295	737	2	ENST00000330684.3:c.4384T>A	p.Ser1462Thr	p.S1462T	ENST00000330684	NM_001134407.1	1462	Tct/Act																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41222973	41222973	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	218	1024	0	ENST00000357654.3:c.4958T>C	p.Val1653Ala	p.V1653A	ENST00000357654	NM_007294.3	1653	gTg/gCg																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7142913	7142913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	149	764	0	ENST00000302850.5:c.2456G>A	p.Arg819His	p.R819H	ENST00000302850	NM_000208.2	819	cGc/cAc																																													NEWRECORD																																		
PGR	5241	MSKCC	GRCh37	11	100922294	100922294	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	198	726	0	ENST00000325455.5:c.2218C>T	p.Arg740Ter	p.R740*	ENST00000325455	NM_001202474.3	740	Cga/Tga																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37646831	37646832	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	AAACCTGTGAAGAAAGAGAAGGAACAGAGGACACGTCACTGACTT			P-0012258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	99	671	0	ENST00000447079.4:c.1993_1994insGACTTAAACCTGTGAAGAAAGAGAAGGAACAGAGGACACGTCACT	p.His664_Leu665insTer	p.H664_L665ins*	ENST00000447079	NM_015083.1	651	-/AAACCTGTGAAGAAAGAGAAGGAACAGAGGACACGTCACTGACTT																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37627916	37627917	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0012258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	314	577	0	ENST00000447079.4:c.1831_1832del	p.Thr611SerfsTer29	p.T611Sfs*29	ENST00000447079	NM_015083.1	611	ACt/t																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56183240	56183241	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	219	477	0	ENST00000399503.3:c.4151dupT	p.Arg1385LysfsTer35	p.R1385Kfs*35	ENST00000399503	NM_005921.1	1384	cta/cTta																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0014798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	163	423	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56184116	56184116	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	263	490	0	ENST00000399503.3:c.4321G>T	p.Glu1441Ter	p.E1441*	ENST00000399503	NM_005921.1	1441	Gaa/Taa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0010343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	829	511	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47144897	47144898	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GAGTGGCATCTATTATCTGGGAGAAGAGGATC			P-0010343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	146	450	0	ENST00000409792.3:c.4840-16_4855dup	p.Gln1619ArgfsTer7	p.Q1619Rfs*7	ENST00000409792	NM_014159.6	1619	caa/cGATCCTCTTCTCCCAGATAATAGATGCCACTCaa																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604696	48604699	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	GAAA	GAAA	TTGAT			P-0010343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	498	414	0	ENST00000342988.3:c.1518_1521delinsTTGAT	p.Lys507Ter	p.K507*	ENST00000342988	NM_005359.5	506	gtGAAA/gtTTGAT																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	60	349	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1219336	1219336	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	49	308	0	ENST00000326873.7:c.388G>T	p.Glu130Ter	p.E130*	ENST00000326873	NM_000455.4	130	Gag/Tag																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151877106	151877106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	34	285	0	ENST00000262189.6:c.7255C>T	p.Pro2419Ser	p.P2419S	ENST00000262189	NM_170606.2	2419	Cct/Tct																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98239912	98239912	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	35	232	0	ENST00000331920.6:c.1420G>T	p.Val474Phe	p.V474F	ENST00000331920	NM_000264.3	474	Gtc/Ttc																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11130334	11130334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	89	433	0	ENST00000344626.4:c.2573C>T	p.Thr858Met	p.T858M	ENST00000344626	NM_003072.3	858	aCg/aTg																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41306729	41306729	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	34	253	0	ENST00000373198.4:c.930T>A	p.Asn310Lys	p.N310K	ENST00000373198	NM_133170.3	310	aaT/aaA																																													NEWRECORD																																		
CHEK2	11200	MSKCC	GRCh37	22	29121325	29121325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	57	401	0	ENST00000328354.6:c.350G>T	p.Arg117Met	p.R117M	ENST00000328354	NM_007194.3	117	aGg/aTg																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10599991	10599992	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0004124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	58	353	0	ENST00000171111.5:c.1584_1585del	p.Asp529ProfsTer44	p.D529Pfs*44	ENST00000171111	NM_203500.1	528	caGGac/caac																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52613209	52613210	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	50	330	0	ENST00000394830.3:c.3318dup	p.Glu1107ArgfsTer11	p.E1107Rfs*11	ENST00000394830	NM_018313.4	1106	-/A																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39931789	39931790	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0004124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	55	515	0	ENST00000378444.4:c.2809_2810delinsAA	p.Pro937Asn	p.P937N	ENST00000378444	NM_001123385.1	937	CCc/AAc																																													NEWRECORD																																		
IKBKE	9641	MSKCC	GRCh37	1	206653830	206653830	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	117	752	0	ENST00000367120.3:c.1381G>C	p.Ala461Pro	p.A461P	ENST00000367120	NM_014002.3	461	Gca/Cca																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32907202	32907203	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	94	493	0	ENST00000380152.3:c.1593dup	p.Glu532ArgfsTer3	p.E532Rfs*3	ENST00000380152		529	-/A																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44918690	44918690	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	98	234	0	ENST00000377967.4:c.1173del	p.Ala392HisfsTer47	p.A392Hfs*47	ENST00000377967	NM_021140.2	391	gcA/gc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0010262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	101	554	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25380262	25380263	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACTGTACTCCTCTTG			P-0010262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	76	433	0	ENST00000256078.4:c.181_195dup	p.Gln61_Ser65dup	p.Q61_S65dup	ENST00000256078	NM_033360.2	61	-/CAAGAGGAGTACAGT																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	73	606	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750600586		P-0012566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	106	625	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372206	55372206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	47	283	1	ENST00000297316.4:c.896C>T	p.Ala299Val	p.A299V	ENST00000297316	NM_022454.3	299	gCg/gTg																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0012566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	79	778	0	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152265445	152265445	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149490424		P-0012566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	85	535	0	ENST00000206249.3:c.898C>T	p.Arg300Cys	p.R300C	ENST00000206249	NM_000125.3	300	Cgc/Tgc																																													NEWRECORD																																		
PARK2	5071	MSKCC	GRCh37	6	161807890	161807890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	46	672	0	ENST00000366898.1:c.1103G>A	p.Cys368Tyr	p.C368Y	ENST00000366898	NM_004562.2	368	tGt/tAt																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72827826	72827826	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	57	1099	0	ENST00000268489.5:c.8755A>C	p.Ser2919Arg	p.S2919R	ENST00000268489	NM_006885.3	2919	Agc/Cgc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173759	112173760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	61	502	0	ENST00000257430.4:c.2469dup	p.Pro824ThrfsTer20	p.P824Tfs*20	ENST00000257430	NM_000038.5	823	tca/tcAa																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	70	487	0	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	103	441	4	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	199	453	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																													NEWRECORD																																		
VTCN1	79679	MSKCC	GRCh37	1	117699283	117699283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	61	471	1	ENST00000369458.3:c.358G>A	p.Val120Met	p.V120M	ENST00000369458	NM_024626.3	120	Gtg/Atg																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	21	147	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	35	193	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	124	643	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29552144	29552144	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	98	441	1	ENST00000358273.4:c.1882delT	p.Tyr628ThrfsTer3	p.Y628Tfs*3	ENST00000358273	NM_001042492.2	626	cTt/ct																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27087503	27087503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	135	563	0	ENST00000324856.7:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000324856	NM_006015.4	693	Cga/Tga																																													NEWRECORD																																		
PAX5	5079	MSKCC	GRCh37	9	37020768	37020769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	132	565	0	ENST00000358127.4:c.76dupG	p.Val26GlyfsTer49	p.V26Gfs*49	ENST00000358127	NM_001280556.1	26	gtt/gGtt																																													NEWRECORD																																		
ETV1	2115	MSKCC	GRCh37	7	13935606	13935606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	74	381	1	ENST00000405192.2:c.1250G>A	p.Arg417His	p.R417H	ENST00000405192	NM_001163147.1	417	cGt/cAt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023079	27023079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	44	131	0	ENST00000324856.7:c.185C>T	p.Ala62Val	p.A62V	ENST00000324856	NM_006015.4	62	gCc/gTc																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	14	110	2	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	143	607	1	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																													NEWRECORD																																		
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	103	540	5	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	152	714	3	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15353819	15353819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	58	392	1	ENST00000263377.2:c.3061delC	p.His1021IlefsTer47	p.H1021Ifs*47	ENST00000263377	NM_058243.2	1021	Cat/at																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	160	682	2	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9934645	9934645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	86	365	1	ENST00000330684.3:c.1510C>T	p.Arg504Trp	p.R504W	ENST00000330684	NM_001134407.1	504	Cgg/Tgg																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	226	571	7	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11313967	11313967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	141	649	4	ENST00000361445.4:c.769C>T	p.Arg257Trp	p.R257W	ENST00000361445	NM_004958.3	257	Cgg/Tgg																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55151647	55151647	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	88	457	2	ENST00000257290.5:c.2438del	p.Asn813IlefsTer20	p.N813Ifs*20	ENST00000257290	NM_006206.4	811	tcA/tc																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88726655	88726655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	89	444	0	ENST00000360948.2:c.389G>A	p.Arg130His	p.R130H	ENST00000360948	NM_001012338.2	130	cGt/cAt																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63852527	63852527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	84	385	0	ENST00000279873.7:c.3305C>A	p.Ser1102Tyr	p.S1102Y	ENST00000279873	NM_032199.2	1102	tCt/tAt																																													NEWRECORD																																		
XRCC2	7516	MSKCC	GRCh37	7	152345768	152345769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	78	393	0	ENST00000359321.1:c.801dup	p.His268ThrfsTer11	p.H268Tfs*11	ENST00000359321	NM_005431.1	267	-/A																																													NEWRECORD																																		
HIST1H3D	8351	MSKCC	GRCh37	6	26197427	26197427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	61	802	1	ENST00000356476.2:c.52C>T	p.Arg18Cys	p.R18C	ENST00000356476		18	Cgc/Tgc																																													NEWRECORD																																		
LATS2	26524	MSKCC	GRCh37	13	21562747	21562747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	37	136	0	ENST00000382592.4:c.1172G>A	p.Arg391His	p.R391H	ENST00000382592	NM_014572.2	391	cGc/cAc																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71027087	71027087	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	99	371	1	ENST00000318789.4:c.1240delC	p.Leu414Ter	p.L414*	ENST00000318789	NM_032682.5	414	Ctg/tg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	38	238	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	124	615	5	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																													NEWRECORD																																		
TNFRSF14	8764	MSKCC	GRCh37	1	2488167	2488167	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	110	519	0	ENST00000355716.4:c.64A>G	p.Arg22Gly	p.R22G	ENST00000355716	NM_003820.2	22	Agg/Ggg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27107126	27107126	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	61	244	0	ENST00000324856.7:c.6737A>C	p.Glu2246Ala	p.E2246A	ENST00000324856	NM_006015.4	2246	gAg/gCg																																													NEWRECORD																																		
CSF3R	1441	MSKCC	GRCh37	1	36932161	36932161	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	165	699	2	ENST00000361632.4:c.2308T>C	p.Cys770Arg	p.C770R	ENST00000361632		770	Tgt/Cgt																																													NEWRECORD																																		
CDC73	79577	MSKCC	GRCh37	1	193172934	193172934	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	96	391	0	ENST00000367435.3:c.982T>C	p.Ser328Pro	p.S328P	ENST00000367435	NM_024529.4	328	Tct/Cct																																													NEWRECORD																																		
FH	2271	MSKCC	GRCh37	1	241663779	241663779	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	48	190	0	ENST00000366560.3:c.1348A>G	p.Asn450Asp	p.N450D	ENST00000366560	NM_000143.3	450	Aat/Gat																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25973061	25973061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	99	534	0	ENST00000435504.4:c.1364C>T	p.Pro455Leu	p.P455L	ENST00000435504		455	cCg/cTg																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48033679	48033679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	62	370	0	ENST00000234420.5:c.3890G>A	p.Ser1297Asn	p.S1297N	ENST00000234420	NM_000179.2	1297	aGc/aAc																																													NEWRECORD																																		
XPO1	7514	MSKCC	GRCh37	2	61729424	61729424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	68	384	0	ENST00000401558.2:c.323G>A	p.Gly108Asp	p.G108D	ENST00000401558	NM_003400.3	108	gGc/gAc																																													NEWRECORD																																		
MLH1	4292	MSKCC	GRCh37	3	37090470	37090470	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	141	324	1	ENST00000231790.2:c.2065C>T	p.Gln689Ter	p.Q689*	ENST00000231790	NM_000249.3	689	Cag/Tag																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47098610	47098610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	98	520	0	ENST00000409792.3:c.6664C>T	p.Pro2222Ser	p.P2222S	ENST00000409792	NM_014159.6	2222	Cca/Tca																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916935	178916935	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	105	583	0	ENST00000263967.3:c.322C>A	p.Arg108Ser	p.R108S	ENST00000263967	NM_006218.2	108	Cgt/Agt																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187524402	187524402	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	92	450	0	ENST00000441802.2:c.11278T>C	p.Ser3760Pro	p.S3760P	ENST00000441802	NM_005245.3	3760	Tca/Cca																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1294577	1294577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	40	207	1	ENST00000310581.5:c.424C>T	p.Arg142Cys	p.R142C	ENST00000310581	NM_198253.2	142	Cgc/Tgc																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56160663	56160663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	106	429	1	ENST00000399503.3:c.937C>T	p.Arg313Trp	p.R313W	ENST00000399503	NM_005921.1	313	Cgg/Tgg																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180056752	180056752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	104	622	0	ENST00000261937.6:c.760G>A	p.Val254Met	p.V254M	ENST00000261937	NM_182925.4	254	Gtg/Atg																																													NEWRECORD																																		
HIST1H3B	8358	MSKCC	GRCh37	6	26032224	26032224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	29	448	0	ENST00000244661.2:c.65C>T	p.Ala22Val	p.A22V	ENST00000244661	NM_003537.3	22	gCt/gTt																																													NEWRECORD																																		
PRDM1	639	MSKCC	GRCh37	6	106553005	106553005	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	109	490	0	ENST00000369096.4:c.970A>G	p.Ile324Val	p.I324V	ENST00000369096	NM_001198.3	324	Atc/Gtc																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157469884	157469884	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	97	501	0	ENST00000346085.5:c.2678C>A	p.Ala893Asp	p.A893D	ENST00000346085	NM_020732.3	893	gCt/gAt																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81381447	81381447	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	49	511	0	ENST00000222390.5:c.614A>G	p.Gln205Arg	p.Q205R	ENST00000222390	NM_000601.4	205	cAg/cGg																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151864329	151864329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	127	545	0	ENST00000262189.6:c.9652A>G	p.Thr3218Ala	p.T3218A	ENST00000262189	NM_170606.2	3218	Act/Gct																																													NEWRECORD																																		
MYC	4609	MSKCC	GRCh37	8	128752659	128752659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	25	363	0	ENST00000377970.2:c.820G>A	p.Glu274Lys	p.E274K	ENST00000377970	NM_002467.4	274	Gag/Aag																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63850811	63850811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	112	493	1	ENST00000279873.7:c.1589C>T	p.Ala530Val	p.A530V	ENST00000279873	NM_032199.2	530	gCa/gTa																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118344182	118344182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	33	513	0	ENST00000534358.1:c.2308C>A	p.Leu770Ile	p.L770I	ENST00000534358	NM_005933.3	770	Ctc/Atc																																													NEWRECORD																																		
ETV6	2120	MSKCC	GRCh37	12	12022361	12022361	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	155	705	0	ENST00000396373.4:c.467A>G	p.Asn156Ser	p.N156S	ENST00000396373	NM_001987.4	156	aAc/aGc																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18656215	18656215	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	56	270	0	ENST00000266497.5:c.2894G>C	p.Gly965Ala	p.G965A	ENST00000266497		965	gGa/gCa																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46244127	46244127	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	89	412	0	ENST00000334344.6:c.2221A>G	p.Ser741Gly	p.S741G	ENST00000334344	NM_152641.2	741	Agt/Ggt																																													NEWRECORD																																		
CDK8	1024	MSKCC	GRCh37	13	26970491	26970491	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs201577656		P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	57	315	0	ENST00000381527.3:c.860C>T	p.Thr287Met	p.T287M	ENST00000381527	NM_001260.1	287	aCg/aTg																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99454670	99454670	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	93	458	0	ENST00000268035.6:c.1589C>T	p.Ala530Val	p.A530V	ENST00000268035	NM_000875.3	530	gCa/gTa																																													NEWRECORD																																		
NUP93	9688	MSKCC	GRCh37	16	56839504	56839504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	196	722	0	ENST00000308159.5:c.449C>T	p.Ala150Val	p.A150V	ENST00000308159	NM_014669.4	150	gCa/gTa																																													NEWRECORD																																		
AURKB	9212	MSKCC	GRCh37	17	8110678	8110678	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	46	476	0	ENST00000585124.1:c.214T>C	p.Phe72Leu	p.F72L	ENST00000585124	NM_004217.3	72	Ttc/Ctc																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15961219	15961219	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	55	262	0	ENST00000268712.3:c.6168+2T>C		p.X2056_splice	ENST00000268712	NM_006311.3	2056																																														NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37686961	37686961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	112	493	2	ENST00000447079.4:c.3865G>A	p.Ala1289Thr	p.A1289T	ENST00000447079	NM_015083.1	1289	Gcc/Acc																																													NEWRECORD																																		
HOXB13	10481	MSKCC	GRCh37	17	46805910	46805910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	115	611	0	ENST00000290295.7:c.46G>A	p.Glu16Lys	p.E16K	ENST00000290295	NM_006361.5	16	Gaa/Aaa																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63533556	63533556	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147716924		P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	121	665	0	ENST00000307078.5:c.1598C>T	p.Ala533Val	p.A533V	ENST00000307078	NM_004655.3	533	gCg/gTg																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2223404	2223404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	116	543	0	ENST00000398665.3:c.3515T>C	p.Leu1172Pro	p.L1172P	ENST00000398665	NM_032482.2	1172	cTg/cCg																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2226610	2226610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	71	371	0	ENST00000398665.3:c.4090G>A	p.Ala1364Thr	p.A1364T	ENST00000398665	NM_032482.2	1364	Gcc/Acc																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11136120	11136120	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	143	661	0	ENST00000344626.4:c.3104T>C	p.Leu1035Pro	p.L1035P	ENST00000344626	NM_003072.3	1035	cTg/cCg																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50905752	50905752	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	45	666	0	ENST00000440232.2:c.800A>T	p.Glu267Val	p.E267V	ENST00000440232	NM_002691.3	267	gAg/gTg																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50910427	50910427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	122	716	2	ENST00000440232.2:c.1682G>A	p.Arg561Gln	p.R561Q	ENST00000440232	NM_002691.3	561	cGg/cAg																																													NEWRECORD																																		
NF2	4771	MSKCC	GRCh37	22	30074207	30074207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	88	658	0	ENST00000338641.4:c.1469C>T	p.Pro490Leu	p.P490L	ENST00000338641	NM_000268.3	490	cCg/cTg																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41568502	41568502	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	84	260	0	ENST00000263253.7:c.4453-1G>A		p.X1485_splice	ENST00000263253	NM_001429.3	1485																																														NEWRECORD																																		
ARAF	369	MSKCC	GRCh37	X	47426305	47426305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	172	385	0	ENST00000377045.4:c.722C>T	p.Thr241Ile	p.T241I	ENST00000377045	NM_001654.4	241	aCt/aTt																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37650793	37650795	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	92	506	1	ENST00000447079.4:c.2269_2271del	p.Lys757del	p.K757del	ENST00000447079	NM_015083.1	755	ctGAAg/ctg																																													NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90995032	90995032	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	68	345	0	ENST00000265433.3:c.89del	p.Asn30ThrfsTer5	p.N30Tfs*5	ENST00000265433	NM_002485.4	30	aAc/ac																																													NEWRECORD																																		
SMARCB1	6598	MSKCC	GRCh37	22	24134056	24134057	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	115	618	0	ENST00000263121.7:c.214dupA	p.Thr72AsnfsTer4	p.T72Nfs*4	ENST00000263121	NM_003073.3	69	-/A																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10270726	10270726	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	97	469	0	ENST00000340748.4:c.1009del	p.Met337TrpfsTer8	p.M337Wfs*8	ENST00000340748		337	Atg/tg																																													NEWRECORD																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52716002	52716002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	110	603	0	ENST00000322088.6:c.571del	p.Glu191SerfsTer39	p.E191Sfs*39	ENST00000322088	NM_014225.5	189	ctG/ct																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98270529	98270530	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778175153		P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	39	287	0	ENST00000331920.6:c.114dup	p.Leu39AlafsTer51	p.L39Afs*51	ENST00000331920	NM_000264.3	38	-/G																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29550472	29550473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	33	274	0	ENST00000358273.4:c.1738dup	p.Tyr580LeufsTer8	p.Y580Lfs*8	ENST00000358273	NM_001042492.2	578	ctt/cTtt																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49447401	49447402	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	104	441	0	ENST00000301067.7:c.696_697del	p.Cys232Ter	p.C232*	ENST00000301067	NM_003482.3	232	tgTGag/tgag																																													NEWRECORD																																		
SMARCD1	6602	MSKCC	GRCh37	12	50482355	50482355	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	104	461	0	ENST00000394963.4:c.711del	p.Phe237LeufsTer5	p.F237Lfs*5	ENST00000394963	NM_003076.4	236	Ttt/tt																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48023186	48023189	+	frameshift_variant	Frame_Shift_Del	DEL	AGGA	AGGA	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	191	891	0	ENST00000234420.5:c.613_616del	p.Glu205LysfsTer5	p.E205Kfs*5	ENST00000234420	NM_000179.2	204	gAGGAa/ga																																													NEWRECORD																																		
HIST1H3B	8358	MSKCC	GRCh37	6	26031970	26031970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000447-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			501	487	176	0	ENST00000244661.2:c.319G>A	p.Asp107Asn	p.D107N	ENST00000244661	NM_003537.3	107	Gac/Aac																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41243829	41243829	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000447-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			581	44	447	0	ENST00000357654.3:c.3719A>T	p.Gln1240Leu	p.Q1240L	ENST00000357654	NM_007294.3	1240	cAg/cTg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577074	7577075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000447-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			521	336	420	0	ENST00000269305.4:c.863dupA	p.Asn288LysfsTer18	p.N288Kfs*18	ENST00000269305	NM_001126112.2	288	aat/aaAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0007332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	78	730	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	15	460	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89711927	89711928	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001337-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			313	131	404	0	ENST00000371953.3:c.548dup	p.Asn184GlufsTer6	p.N184Efs*6	ENST00000371953	NM_000314.4	182	tta/ttAa																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	50	152	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0007998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	148	379	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56189412	56189412	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	150	356	0	ENST00000399503.3:c.4444C>T	p.Arg1482Ter	p.R1482*	ENST00000399503	NM_005921.1	1482	Cga/Tga																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156834552	156834552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	101	317	0	ENST00000524377.1:c.320C>T	p.Ala107Val	p.A107V	ENST00000524377	NM_002529.3	107	gCg/gTg																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453138	140453139	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTA			P-0007998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	257	248	0	ENST00000288602.6:c.1794_1796dupTAC	p.Thr599dup	p.T599dup	ENST00000288602	NM_004333.4	599	aca/acTACa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0007998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	191	225	0	ENST00000269305.4:c.365_366delTG	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66467589	66467589	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772693559		P-0007998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	89	329	1	ENST00000273854.3:c.680G>A	p.Arg227His	p.R227H	ENST00000273854	NM_004439.5	227	cGt/cAt																																													NEWRECORD																																		
SDHA	6389	MSKCC	GRCh37	5	228339	228339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	69	144	0	ENST00000264932.6:c.661G>T	p.Ala221Ser	p.A221S	ENST00000264932	NM_004168.2	221	Gcc/Tcc																																													NEWRECORD																																		
HLA-A	3105	MSKCC	GRCh37	6	29911177	29911177	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	40	82	0	ENST00000376809.5:c.476C>G	p.Ala159Gly	p.A159G	ENST00000376809	NM_002116.7	159	gCg/gGg																																													NEWRECORD																																		
PRKAR1A	5573	MSKCC	GRCh37	17	66519933	66519933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	72	241	0	ENST00000358598.2:c.416C>T	p.Ser139Leu	p.S139L	ENST00000358598	NM_212471.2	139	tCa/tTa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174097	112174112	+	frameshift_variant	Frame_Shift_Del	DEL	AATTTCACTAAGTCGG	AATTTCACTAAGTCGG	-			P-0007998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	95	284	0	ENST00000257430.4:c.2808_2823del	p.Asn936LysfsTer14	p.N936Kfs*14	ENST00000257430	NM_000038.5	936	AATTTCACTAAGTCGGaa/aa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	344	339	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
CALR	811	MSKCC	GRCh37	19	13054366	13054366	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1585	517	796	0	ENST00000316448.5:c.976A>G	p.Ile326Val	p.I326V	ENST00000316448	NM_004343.3	326	Atc/Gtc																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32910455	32910455	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1262	712	819	1	ENST00000380152.3:c.1964del	p.Pro655GlnfsTer5	p.P655Qfs*5	ENST00000380152		655	Cca/ca																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	55	673	1	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																													NEWRECORD																																		
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0004435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	82	1032	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																													NEWRECORD																																		
SH2B3	10019	MSKCC	GRCh37	12	111856640	111856640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	85	461	0	ENST00000341259.2:c.691G>A	p.Asp231Asn	p.D231N	ENST00000341259	NM_005475.2	231	Gat/Aat																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42041747	42041748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	80	1327	0	ENST00000219905.7:c.5945dup	p.Asn1982LysfsTer23	p.N1982Kfs*23	ENST00000219905	NM_001164273.1	1981	aca/acAa																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56160638	56160638	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	73	676	0	ENST00000399503.3:c.914delA	p.Asn305ThrfsTer7	p.N305Tfs*7	ENST00000399503	NM_005921.1	304	acA/ac																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37881002	37881003	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTCCCCA			P-0004908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	130	757	0	ENST00000269571.5:c.2332_2340dupGGCTCCCCA	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	-/GGCTCCCCA																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115120880	115120880	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	120	678	0	ENST00000257566.3:c.126delC	p.Ala43ArgfsTer2	p.A43Rfs*2	ENST00000257566	NM_016569.3	42	ccC/cc																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56177598	56177620	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTATTGCAGATGAGGTGGAAA	GGCTATTGCAGATGAGGTGGAAA	-			P-0004908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	126	704	0	ENST00000399503.3:c.2571_2593delGGCTATTGCAGATGAGGTGGAAA	p.Met857IlefsTer39	p.M857Ifs*39	ENST00000399503	NM_005921.1	857	atGGCTATTGCAGATGAGGTGGAAAtt/attt																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0004718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	371	478	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	397	434	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0004718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	1077	441	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15354058	15354058	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	27	186	0	ENST00000263377.2:c.2822C>A	p.Pro941His	p.P941H	ENST00000263377	NM_058243.2	941	cCt/cAt																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120464364	120464365	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	54	430	0	ENST00000256646.2:c.5281dup	p.Asp1761GlyfsTer2	p.D1761Gfs*2	ENST00000256646	NM_024408.3	1761	gat/gGat																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	397	394	3	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0006345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	256	662	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0006345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	213	492	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0006345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	209	458	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	480	448	0	ENST00000359013.4:c.1658G>T	p.Arg553Leu	p.R553L	ENST00000359013	NM_001024847.2	553	cGt/cTt																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176722431	176722431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	208	547	0	ENST00000439151.2:c.8062C>T	p.His2688Tyr	p.H2688Y	ENST00000439151	NM_022455.4	2688	Cac/Tac																																													NEWRECORD																																		
PRDM1	639	MSKCC	GRCh37	6	106553533	106553533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	122	255	0	ENST00000369096.4:c.1498G>A	p.Gly500Arg	p.G500R	ENST00000369096	NM_001198.3	500	Ggg/Agg																																													NEWRECORD																																		
NEGR1	257194	MSKCC	GRCh37	1	72076826	72076826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	204	383	2	ENST00000357731.5:c.671C>T	p.Ala224Val	p.A224V	ENST00000357731	NM_173808.2	224	gCt/gTt																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66286209	66286209	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	236	541	2	ENST00000273854.3:c.1477G>T	p.Asp493Tyr	p.D493Y	ENST00000273854	NM_004439.5	493	Gat/Tat																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56488229	56488229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	407	486	0	ENST00000267101.3:c.1748C>T	p.Pro583Leu	p.P583L	ENST00000267101	NM_001982.3	583	cCc/cTc																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67063331	67063331	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	101	295	0	ENST00000412916.2:c.21C>G	p.Asp7Glu	p.D7E	ENST00000412916		7	gaC/gaG																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70120472	70120473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	216	531	0	ENST00000245479.2:c.1477dup	p.His493ProfsTer85	p.H493Pfs*85	ENST00000245479	NM_000346.3	492	acc/aCcc																																													NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215645738	215645738	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	18	394	0	ENST00000260947.4:c.860A>C	p.Glu287Ala	p.E287A	ENST00000260947	NM_000465.2	287	gAg/gCg																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180046053	180046053	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	15	232	0	ENST00000261937.6:c.2818C>A	p.Arg940Ser	p.R940S	ENST00000261937	NM_182925.4	940	Cgc/Agc																																													NEWRECORD																																		
PRDM1	639	MSKCC	GRCh37	6	106553561	106553561	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	28	253	0	ENST00000369096.4:c.1526C>A	p.Ala509Asp	p.A509D	ENST00000369096	NM_001198.3	509	gCc/gAc																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49436112	49436112	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0006540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	10	101	0	ENST00000301067.7:c.5869G>T	p.Glu1957Ter	p.E1957*	ENST00000301067	NM_003482.3	1957	Gag/Tag																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133220436	133220436	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	55	403	0	ENST00000320574.5:c.4277T>C	p.Val1426Ala	p.V1426A	ENST00000320574	NM_006231.2	1426	gTa/gCa																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133237688	133237688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	62	520	1	ENST00000320574.5:c.2927G>A	p.Arg976His	p.R976H	ENST00000320574	NM_006231.2	976	cGc/cAc																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10602872	10602872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	95	522	2	ENST00000171111.5:c.706G>A	p.Asp236Asn	p.D236N	ENST00000171111	NM_203500.1	236	Gac/Aac																																													NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31368244	31368244	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	35	424	0	ENST00000328111.2:c.115G>T	p.Glu39Ter	p.E39*	ENST00000328111	NM_006892.3	39	Gag/Tag																																													NEWRECORD																																		
CHEK2	11200	MSKCC	GRCh37	22	29092948	29092948	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	38	530	0	ENST00000328354.6:c.1036C>G	p.Arg346Gly	p.R346G	ENST00000328354	NM_007194.3	346	Cgt/Ggt																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63810748	63810749	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	20	334	0	ENST00000279873.7:c.837dup	p.Val280ArgfsTer7	p.V280Rfs*7	ENST00000279873	NM_032199.2	279	gcc/gCcc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578473	7578474	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	47	487	0	ENST00000269305.4:c.456dup	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	-/G																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66231723	66231724	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0006540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	17	455	1	ENST00000273854.3:c.1976_1977delinsAA	p.Pro659Gln	p.P659Q	ENST00000273854	NM_004439.5	659	cCC/cAA																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002387-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			204	288	337	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0002387-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			161	217	232	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002387-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			629	236	433	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27089705	27089706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1286891446		P-0013432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	128	480	0	ENST00000324856.7:c.2666dup	p.Met890HisfsTer46	p.M890Hfs*46	ENST00000324856	NM_006015.4	887	-/G																																													NEWRECORD																																		
CSF1R	1436	MSKCC	GRCh37	5	149436860	149436860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	104	592	0	ENST00000286301.3:c.2309C>A	p.Ala770Asp	p.A770D	ENST00000286301	NM_005211.3	770	gCt/gAt																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64573226	64573226	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	206	706	0	ENST00000337652.1:c.1081G>T	p.Glu361Ter	p.E361*	ENST00000337652	NM_130803.2	361	Gaa/Taa																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56155649	56155658	+	frameshift_variant	Frame_Shift_Del	DEL	CCGACGCAGT	CCGACGCAGT	-			P-0013432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	252	417	0	ENST00000399503.3:c.743_752del	p.Arg248LeufsTer12	p.R248Lfs*12	ENST00000399503	NM_005921.1	247	ggCCGACGCAGT/gg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	125	376	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0006183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	249	470	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	162	273	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	137	446	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173926	112173926	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	124	409	1	ENST00000257430.4:c.2635C>T	p.Gln879Ter	p.Q879*	ENST00000257430	NM_000038.5	879	Cag/Tag																																													NEWRECORD																																		
BCL2	596	MSKCC	GRCh37	18	60985385	60985385	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	119	775	1	ENST00000333681.4:c.515A>G	p.Asn172Ser	p.N172S	ENST00000333681		172	aAc/aGc																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11170729	11170729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	336	686	0	ENST00000344626.4:c.4777G>A	p.Val1593Ile	p.V1593I	ENST00000344626	NM_003072.3	1593	Gtc/Atc																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52623069	52623160	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTTAAAACAAACTTACCAGCTGAATCCTCCCACAGTCTTTCAATACAGACGATATGTGGTTGTAGGTTGGCCTCTGCAGGTTCCACATAGA	ATTTAAAACAAACTTACCAGCTGAATCCTCCCACAGTCTTTCAATACAGACGATATGTGGTTGTAGGTTGGCCTCTGCAGGTTCCACATAGA	-			P-0006183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	109	357	0	ENST00000394830.3:c.2891_2965+17del		p.X964_splice	ENST00000394830	NM_018313.4	964																																														NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31023045	31023046	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	475	593	0	ENST00000375687.4:c.2535dup	p.Ser846GlnfsTer5	p.S846Qfs*5	ENST00000375687	NM_015338.5	844	acc/aCcc																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913389		P-0004827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	71	307	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187509826	187509826	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	43	210	1	ENST00000441802.2:c.13687G>T	p.Asp4563Tyr	p.D4563Y	ENST00000441802	NM_005245.3	4563	Gac/Tac																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187539387	187539387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	53	329	0	ENST00000441802.2:c.8353G>A	p.Asp2785Asn	p.D2785N	ENST00000441802	NM_005245.3	2785	Gat/Aat																																													NEWRECORD																																		
FGFR1	2260	MSKCC	GRCh37	8	38273452	38273452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1154	218	551	1	ENST00000425967.3:c.1883C>T	p.Ser628Phe	p.S628F	ENST00000425967	NM_001174067.1	628	tCc/tTc																																													NEWRECORD																																		
FANCC	2176	MSKCC	GRCh37	9	97887428	97887428	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	185	363	0	ENST00000289081.3:c.936A>G	p.Ile312Met	p.I312M	ENST00000289081	NM_000136.2	312	atA/atG																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98224281	98224281	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	43	225	0	ENST00000331920.6:c.2561-1G>A		p.X854_splice	ENST00000331920	NM_000264.3	854																																														NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39923196	39923196	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	55	203	0	ENST00000378444.4:c.3512C>A	p.Pro1171His	p.P1171H	ENST00000378444	NM_001123385.1	1171	cCt/cAt																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106196594	106196595	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	82	366	0	ENST00000380013.4:c.4931dup	p.Tyr1645IlefsTer16	p.Y1645Ifs*16	ENST00000380013	NM_001127208.2	1643	tcc/tCcc																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	105	235	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	80	213	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	42	96	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	108	288	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578213	7578214	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-	rs1131691030		P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	147	298	0	ENST00000269305.4:c.635_636del	p.Phe212SerfsTer3	p.F212Sfs*3	ENST00000269305	NM_001126112.2	212	tTT/t																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45368208	45368208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	146	212	0	ENST00000262160.6:c.1394G>A	p.Ser465Asn	p.S465N	ENST00000262160	NM_005901.5	465	aGc/aAc																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	30143044	30143044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	134	277	0	ENST00000389048.3:c.482C>T	p.Ala161Val	p.A161V	ENST00000389048	NM_004304.4	161	gCg/gTg																																													NEWRECORD																																		
MITF	4286	MSKCC	GRCh37	3	70014214	70014214	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	154	431	0	ENST00000352241.4:c.1378G>C	p.Glu460Gln	p.E460Q	ENST00000352241	NM_198159.2	460	Gag/Cag																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	39074223	39074223	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	70	136	0	ENST00000357387.3:c.87T>A	p.Asp29Glu	p.D29E	ENST00000357387	NM_152756.3	29	gaT/gaA																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173578	112173578	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	86	258	0	ENST00000257430.4:c.2287G>T	p.Glu763Ter	p.E763*	ENST00000257430	NM_000038.5	763	Gaa/Taa																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176684080	176684080	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	38	298	0	ENST00000439151.2:c.4894G>T	p.Gly1632Cys	p.G1632C	ENST00000439151	NM_022455.4	1632	Ggc/Tgc																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720650	89720650	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	30	73	0	ENST00000371953.3:c.802-1G>A		p.X268_splice	ENST00000371953	NM_000314.4	268																																														NEWRECORD																																		
LMO1	4004	MSKCC	GRCh37	11	8251846	8251846	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	27	229	0	ENST00000335790.3:c.231C>G	p.Asp77Glu	p.D77E	ENST00000335790	NM_002315.2	77	gaC/gaG																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46254723	46254723	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	69	263	0	ENST00000334344.6:c.4913C>G	p.Ser1638Cys	p.S1638C	ENST00000334344	NM_152641.2	1638	tCt/tGt																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3786715	3786715	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	46	372	0	ENST00000262367.5:c.4496T>A	p.Leu1499Gln	p.L1499Q	ENST00000262367	NM_004380.2	1499	cTg/cAg																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81927367	81927367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	171	304	0	ENST00000359376.3:c.1040G>A	p.Arg347His	p.R347H	ENST00000359376	NM_002661.3	347	cGc/cAc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916922	178916927	+	inframe_deletion	In_Frame_Del	DEL	ACCAGT	ACCAGT	-			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	145	386	0	ENST00000263967.3:c.310_315del	p.Pro104_Val105del	p.P104_V105del	ENST00000263967	NM_006218.2	103	gaACCAGTa/gaa																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63554485	63554486	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGG			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	177	253	0	ENST00000307078.5:c.251_253dup	p.Ser84dup	p.S84dup	ENST00000307078	NM_004655.3	84	tta/tCCTta																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	79	257	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89528588	89528588	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	47	257	0	ENST00000336596.2:c.2888A>T	p.Lys963Met	p.K963M	ENST00000336596	NM_005233.5	963	aAg/aTg																																													NEWRECORD																																		
FOXL2	668	MSKCC	GRCh37	3	138665210	138665210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	99	321	0	ENST00000330315.3:c.355G>T	p.Gly119Cys	p.G119C	ENST00000330315	NM_023067.3	119	Ggc/Tgc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178951894	178951894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	59	268	0	ENST00000263967.3:c.2949G>A	p.Met983Ile	p.M983I	ENST00000263967	NM_006218.2	983	atG/atA																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55143565	55143565	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	99	277	0	ENST00000257290.5:c.1797G>T	p.Leu599Phe	p.L599F	ENST00000257290	NM_006206.4	599	ttG/ttT																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55155282	55155282	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	46	206	0	ENST00000257290.5:c.2880+1G>T		p.X960_splice	ENST00000257290	NM_006206.4	960																																														NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153247271	153247271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1163	188	340	0	ENST00000281708.4:c.1531G>T	p.Gly511Cys	p.G511C	ENST00000281708	NM_033632.3	511	Ggc/Tgc																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180036016	180036016	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	89	341	0	ENST00000261937.6:c.3845A>G	p.Glu1282Gly	p.E1282G	ENST00000261937	NM_182925.4	1282	gAg/gGg																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133759580	133759580	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	81	317	0	ENST00000318560.5:c.1903G>T	p.Glu635Ter	p.E635*	ENST00000318560	NM_005157.4	635	Gag/Tag																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42042160	42042160	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1263	127	519	0	ENST00000219905.7:c.6355G>T	p.Gly2119Ter	p.G2119*	ENST00000219905	NM_001164273.1	2119	Gga/Tga																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72833950	72833950	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	128	343	0	ENST00000268489.5:c.3943T>G	p.Leu1315Val	p.L1315V	ENST00000268489	NM_006885.3	1315	Ttg/Gtg																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10600392	10600392	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	175	354	0	ENST00000171111.5:c.1463A>T	p.Glu488Val	p.E488V	ENST00000171111	NM_203500.1	488	gAg/gTg																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8436631	8436632	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1140	80	321	0	ENST00000356435.5:c.4046dup	p.Leu1349PhefsTer5	p.L1349Ffs*5	ENST00000356435		1349	ttg/ttTg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	234	411	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
PGR	5241	MSKCC	GRCh37	11	100922293	100922293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149186732		P-0014801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	151	274	0	ENST00000325455.5:c.2219G>A	p.Arg740Gln	p.R740Q	ENST00000325455	NM_001202474.3	740	cGa/cAa																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151878785	151878785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	183	335	0	ENST00000262189.6:c.6160C>T	p.Gln2054Ter	p.Q2054*	ENST00000262189	NM_170606.2	2054	Cag/Tag																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115718	8115719	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	62	366	0	ENST00000346208.3:c.1065dup	p.Met356TyrfsTer15	p.M356Yfs*15	ENST00000346208		355	act/acTt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0007546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	45	484	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143324117	143324117	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	24	353	0	ENST00000262992.4:c.346G>C	p.Asp116His	p.D116H	ENST00000262992	NM_001101669.1	116	Gat/Cat																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133220563	133220563	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0007546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	24	266	1	ENST00000320574.5:c.4150G>T	p.Val1384Leu	p.V1384L	ENST00000320574	NM_006231.2	1384	Gta/Tta																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123196792	123196792	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	41	429	0	ENST00000218089.9:c.1679G>C	p.Arg560Thr	p.R560T	ENST00000218089	NM_001042749.1	560	aGg/aCg																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1220491	1220492	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	38	523	0	ENST00000326873.7:c.587dup	p.Val197ArgfsTer69	p.V197Rfs*69	ENST00000326873	NM_000455.4	195	ctg/ctGg																																													NEWRECORD																																		
CHEK2	11200	MSKCC	GRCh37	22	29120965	29120965	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0001500-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			493	217	253	0	ENST00000328354.6:c.592G>C	p.Val198Leu	p.V198L	ENST00000328354	NM_007194.3	198	Gtt/Ctt																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0001500-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			244	80	210	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578464	7578464	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001500-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			390	448	347	0	ENST00000269305.4:c.466delC	p.Arg156AlafsTer14	p.R156Afs*14	ENST00000269305	NM_001126112.2	156	Cgc/gc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0001500-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			651	96	375	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145737142	145737142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61755067		P-0001500-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			597	215	406	0	ENST00000428558.2:c.3424G>A	p.Asp1142Asn	p.D1142N	ENST00000428558	NM_004260.3	1142	Gac/Aac																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0001500-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	143	566	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89881001	89881001	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001500-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			801	337	409	0	ENST00000389301.3:c.210A>T	p.Lys70Asn	p.K70N	ENST00000389301	NM_000135.2	70	aaA/aaT																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175749	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	TACTTTATTACAT	TACTTTATTACAT	-			P-0001500-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			309	172	245	0	ENST00000257430.4:c.4459_4471delACTTTATTACATT	p.Thr1487LeufsTer16	p.T1487Lfs*16	ENST00000257430	NM_000038.5	1486	gaTACTTTATTACAT/ga																																													NEWRECORD																																		
NKX2-1	7080	MSKCC	GRCh37	14	36988224	36988247	+	inframe_deletion	In_Frame_Del	DEL	CCATCCGGGGCCAGAGGCGCTGTT	CCATCCGGGGCCAGAGGCGCTGTT	-			P-0001500-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			179	38	132	0	ENST00000354822.5:c.406_429delAACAGCGCCTCTGGCCCCGGATGG	p.Asn136_Trp143del	p.N136_W143del	ENST00000354822	NM_001079668.2	136	AACAGCGCCTCTGGCCCCGGATGG/-																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17122378	17122379	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001500-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			336	414	415	0	ENST00000285071.4:c.1016dupA	p.Pro340AlafsTer50	p.P340Afs*50	ENST00000285071	NM_144997.5	339	cag/caAg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0001500-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			372	202	266	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8528707	8528707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001500-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			494	91	347	1	ENST00000356435.5:c.425C>T	p.Thr142Met	p.T142M	ENST00000356435		142	aCg/aTg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0002048-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			679	173	254	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																													NEWRECORD																																		
PIK3R2	5296	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002048-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			484	225	214	0	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175324	112175324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002048-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	136	268	0	ENST00000257430.4:c.4033G>T	p.Glu1345Ter	p.E1345*	ENST00000257430	NM_000038.5	1345	Gaa/Taa																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47125500	47125500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002048-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	493	405	0	ENST00000409792.3:c.5770C>T	p.Gln1924Ter	p.Q1924*	ENST00000409792	NM_014159.6	1924	Cag/Tag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112137081	112137081	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0002048-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	132	192	0	ENST00000257430.4:c.834+1G>A		p.X278_splice	ENST00000257430	NM_000038.5	278																																														NEWRECORD																																		
TNFAIP3	7128	MSKCC	GRCh37	6	138200377	138200377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002048-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			418	148	234	0	ENST00000237289.4:c.1795G>A	p.Gly599Arg	p.G599R	ENST00000237289	NM_001270507.1	599	Ggg/Agg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579419	7579420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002048-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	310	264	0	ENST00000269305.4:c.267dup	p.Ser90LeufsTer59	p.S90Lfs*59	ENST00000269305	NM_001126112.2	89	-/C																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	75	600	1	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																													NEWRECORD																																		
RARA	5914	MSKCC	GRCh37	17	38487554	38487554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	277	973	1	ENST00000254066.5:c.89delC	p.Pro30LeufsTer12	p.P30Lfs*12	ENST00000254066	NM_000964.3	28	ttC/tt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	55	294	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	186	621	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	427	665	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	128	468	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	270	848	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43604533	43604533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	207	846	2	ENST00000355710.3:c.1118C>T	p.Ala373Val	p.A373V	ENST00000355710	NM_020975.4	373	gCg/gTg																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	108	574	4	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	132	319	6	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67477184	67477184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	41	455	1	ENST00000327367.4:c.991G>A	p.Val331Ile	p.V331I	ENST00000327367	NM_005902.3	331	Gtc/Atc																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	38	722	1	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	19	164	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29586102	29586102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	98	511	0	ENST00000358273.4:c.4385G>A	p.Arg1462Gln	p.R1462Q	ENST00000358273	NM_001042492.2	1462	cGg/cAg																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180051011	180051011	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146167161		P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	47	815	3	ENST00000261937.6:c.1472C>T	p.Ala491Val	p.A491V	ENST00000261937	NM_182925.4	491	gCg/gTg																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70405652	70405652	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	118	623	1	ENST00000373644.4:c.3171del	p.Lys1057AsnfsTer25	p.K1057Nfs*25	ENST00000373644	NM_030625.2	1056	Aaa/aa																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519896		P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	228	695	0	ENST00000281708.4:c.1514G>T	p.Arg505Leu	p.R505L	ENST00000281708	NM_033632.3	505	cGc/cTc																																													NEWRECORD																																		
SYK	6850	MSKCC	GRCh37	9	93606273	93606273	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	140	803	0	ENST00000375746.1:c.98delG	p.Gly33AlafsTer2	p.G33Afs*2	ENST00000375746	NM_001174167.1	31	caG/ca																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133202738	133202738	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	228	691	0	ENST00000320574.5:c.6496G>T	p.Asp2166Tyr	p.D2166Y	ENST00000320574	NM_006231.2	2166	Gac/Tac																																													NEWRECORD																																		
JUN	3725	MSKCC	GRCh37	1	59248325	59248325	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	30	169	0	ENST00000371222.2:c.418del	p.Ala140GlnfsTer8	p.A140Qfs*8	ENST00000371222	NM_002228.3	140	Gca/ca																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25470551	25470551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	244	720	2	ENST00000264709.3:c.923G>A	p.Gly308Asp	p.G308D	ENST00000264709	NM_175629.2	308	gGc/gAc																																													NEWRECORD																																		
DAXX	1616	MSKCC	GRCh37	6	33288785	33288785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	76	385	1	ENST00000374542.5:c.767G>A	p.Arg256His	p.R256H	ENST00000374542	NM_001141970.1	256	cGc/cAc																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925318	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	236	1059	0	ENST00000543371.1:c.1402_1403del	p.Lys468ValfsTer8	p.K468Vfs*8	ENST00000543371	NM_001198531.1	465	agAAaa/agaa																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16256321	16256321	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	142	513	0	ENST00000375759.3:c.3591del	p.Asp1198MetfsTer2	p.D1198Mfs*2	ENST00000375759	NM_015001.2	1196	Aaa/aa																																													NEWRECORD																																		
STK40	83931	MSKCC	GRCh37	1	36820970	36820970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	243	870	0	ENST00000373129.3:c.407G>A	p.Arg136His	p.R136H	ENST00000373129	NM_032017.1	136	cGc/cAc																																													NEWRECORD																																		
CDC73	79577	MSKCC	GRCh37	1	193094322	193094322	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	230	551	0	ENST00000367435.3:c.212A>G	p.His71Arg	p.H71R	ENST00000367435	NM_024529.4	71	cAt/cGt																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70404897	70404897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	151	539	1	ENST00000373644.4:c.2411T>C	p.Met804Thr	p.M804T	ENST00000373644	NM_030625.2	804	aTg/aCg																																													NEWRECORD																																		
BMPR1A	657	MSKCC	GRCh37	10	88683175	88683175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	104	281	0	ENST00000372037.3:c.1385C>T	p.Pro462Leu	p.P462L	ENST00000372037	NM_004329.2	462	cCg/cTg																																													NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64138902	64138902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	50	595	1	ENST00000334205.4:c.2269G>A	p.Ala757Thr	p.A757T	ENST00000334205	NM_003942.2	757	Gcc/Acc																																													NEWRECORD																																		
PGR	5241	MSKCC	GRCh37	11	100999601	100999601	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	321	1300	0	ENST00000325455.5:c.201G>T	p.Gln67His	p.Q67H	ENST00000325455	NM_001202474.3	67	caG/caT																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49432461	49432461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	163	1003	0	ENST00000301067.7:c.8678C>T	p.Thr2893Ile	p.T2893I	ENST00000301067	NM_003482.3	2893	aCt/aTt																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56482642	56482642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	201	676	1	ENST00000267101.3:c.1099G>A	p.Gly367Ser	p.G367S	ENST00000267101	NM_001982.3	367	Ggc/Agc																																													NEWRECORD																																		
FOXO1	2308	MSKCC	GRCh37	13	41134600	41134600	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	361	1406	0	ENST00000379561.5:c.1028T>C	p.Val343Ala	p.V343A	ENST00000379561	NM_002015.3	343	gTg/gCg																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95579427	95579429	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ACA	ACA	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	126	413	0	ENST00000343455.3:c.2040_2040+2del		p.X680_splice	ENST00000343455	NM_177438.2	680																																														NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9857428	9857428	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	188	764	0	ENST00000330684.3:c.3973del	p.Tyr1325ThrfsTer72	p.Y1325Tfs*72	ENST00000330684	NM_001134407.1	1325	Tac/ac																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23646215	23646215	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	282	916	0	ENST00000261584.4:c.1652A>G	p.Tyr551Cys	p.Y551C	ENST00000261584	NM_024675.3	551	tAt/tGt																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89839751	89839751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	53	952	2	ENST00000389301.3:c.1942G>A	p.Glu648Lys	p.E648K	ENST00000389301	NM_000135.2	648	Gag/Aag																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15974830	15974830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	212	724	0	ENST00000268712.3:c.4045C>T	p.Arg1349Cys	p.R1349C	ENST00000268712	NM_006311.3	1349	Cgt/Tgt																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37865618	37865618	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	302	932	1	ENST00000269571.5:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269571		163	Tac/Cac																																													NEWRECORD																																		
RARA	5914	MSKCC	GRCh37	17	38512370	38512370	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	109	600	2	ENST00000254066.5:c.1286del	p.Gly429ValfsTer214	p.G429Vfs*214	ENST00000254066	NM_000964.3	427	ccG/cc																																													NEWRECORD																																		
SRSF2	6427	MSKCC	GRCh37	17	74732956	74732956	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	209	648	2	ENST00000359995.5:c.287delC	p.Pro96ArgfsTer136	p.P96Rfs*136	ENST00000359995	NM_001195427.1	96	cCg/cg																																													NEWRECORD																																		
BCL2	596	MSKCC	GRCh37	18	60985776	60985776	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	143	415	3	ENST00000333681.4:c.124del	p.Ala42ProfsTer54	p.A42Pfs*54	ENST00000333681		42	Gcc/cc																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15281155	15281155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	191	866	0	ENST00000263388.2:c.5101G>A	p.Ala1701Thr	p.A1701T	ENST00000263388	NM_000435.2	1701	Gcg/Acg																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15355128	15355128	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	113	634	0	ENST00000263377.2:c.2495A>C	p.Gln832Pro	p.Q832P	ENST00000263377	NM_058243.2	832	cAg/cCg																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42792016	42792016	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	213	808	0	ENST00000575354.2:c.820C>T	p.Arg274Ter	p.R274*	ENST00000575354	NM_015125.3	274	Cga/Tga																																													NEWRECORD																																		
CTLA4	1493	MSKCC	GRCh37	2	204732667	204732667	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	36	557	0	ENST00000302823.3:c.2T>C	p.Met1?	p.M1?	ENST00000302823	NM_005214.4	1	aTg/aCg																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212251713	212251713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	54	630	0	ENST00000342788.4:c.3346G>T	p.Ala1116Ser	p.A1116S	ENST00000342788	NM_005235.2	1116	Gca/Tca																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41523692	41523692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	268	883	0	ENST00000263253.7:c.1108C>T	p.Arg370Cys	p.R370C	ENST00000263253	NM_001429.3	370	Cgc/Tgc																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41564766	41564766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	64	864	2	ENST00000263253.7:c.4067G>A	p.Arg1356Gln	p.R1356Q	ENST00000263253	NM_001429.3	1356	cGa/cAa																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89259635	89259635	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	26	282	0	ENST00000336596.2:c.779A>G	p.Asn260Ser	p.N260S	ENST00000336596	NM_005233.5	260	aAt/aGt																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138403527	138403527	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140578043		P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	267	911	1	ENST00000289153.2:c.2255G>A	p.Arg752Gln	p.R752Q	ENST00000289153	NM_006219.2	752	cGg/cAg																																													NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189582134	189582135	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	209	684	0	ENST00000264731.3:c.699dupA	p.Ala234SerfsTer2	p.A234Sfs*2	ENST00000264731	NM_003722.4	231	-/A																																													NEWRECORD																																		
KIT	3815	MSKCC	GRCh37	4	55561861	55561861	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201872586		P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	126	676	0	ENST00000288135.5:c.251C>T	p.Thr84Met	p.T84M	ENST00000288135	NM_000222.2	84	aCg/aTg																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106156217	106156218	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	34	570	0	ENST00000380013.4:c.1120_1121del	p.Asn374Ter	p.N374*	ENST00000380013	NM_001127208.2	373	cAA/c																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106157059	106157060	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	225	963	0	ENST00000380013.4:c.1965dup	p.Pro656ThrfsTer25	p.P656Tfs*25	ENST00000380013	NM_001127208.2	654	caa/cAaa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112176909	112176909	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	44	599	0	ENST00000257430.4:c.5618A>G	p.Asp1873Gly	p.D1873G	ENST00000257430	NM_000038.5	1873	gAc/gGc																																													NEWRECORD																																		
FGFR4	2264	MSKCC	GRCh37	5	176524541	176524541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	250	1009	3	ENST00000292408.4:c.2273G>A	p.Arg758His	p.R758H	ENST00000292408	NM_213647.1	758	cGc/cAc																																													NEWRECORD																																		
FYN	2534	MSKCC	GRCh37	6	112015676	112015676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	315	1098	2	ENST00000368678.4:c.1166G>A	p.Arg389Gln	p.R389Q	ENST00000368678		389	cGa/cAa																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151878928	151878928	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	100	613	0	ENST00000262189.6:c.6017A>G	p.His2006Arg	p.H2006R	ENST00000262189	NM_170606.2	2006	cAc/cGc																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98211575	98211575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	35	582	0	ENST00000331920.6:c.3580C>T	p.Pro1194Ser	p.P1194S	ENST00000331920	NM_000264.3	1194	Ccc/Tcc																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98241381	98241381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	151	638	0	ENST00000331920.6:c.1116G>A	p.Met372Ile	p.M372I	ENST00000331920	NM_000264.3	372	atG/atA																																													NEWRECORD																																		
TGFBR1	7046	MSKCC	GRCh37	9	101900204	101900204	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	303	808	0	ENST00000374994.4:c.638A>G	p.Lys213Arg	p.K213R	ENST00000374994	NM_004612.2	213	aAa/aGa																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9858332	9858332	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001648-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	66	404	1	ENST00000330684.3:c.3069G>C	p.Gln1023His	p.Q1023H	ENST00000330684	NM_001134407.1	1023	caG/caC																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9858599	9858599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001648-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			822	88	555	0	ENST00000330684.3:c.2802G>T	p.Met934Ile	p.M934I	ENST00000330684	NM_001134407.1	934	atG/atT																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111499	8111500	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001648-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			715	207	582	0	ENST00000346208.3:c.987dup	p.Arg330GlufsTer22	p.R330Efs*22	ENST00000346208		329	agg/aGgg																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	122	368	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0005996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	146	405	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56440001	56440001	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0005996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	411	504	1	ENST00000407977.2:c.591T>A	p.Tyr197Ter	p.Y197*	ENST00000407977		197	taT/taA																																													NEWRECORD																																		
BMPR1A	657	MSKCC	GRCh37	10	88651959	88651960	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0005996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	81	333	0	ENST00000372037.3:c.308_309del	p.Tyr103Ter	p.Y103*	ENST00000372037	NM_004329.2	102	aaATat/aaat																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70120258	70120259	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	192	613	0	ENST00000245479.2:c.1261dupA	p.Ser421LysfsTer157	p.S421Kfs*157	ENST00000245479	NM_000346.3	420	-/A																																													NEWRECORD																																		
CHEK2	11200	MSKCC	GRCh37	22	29130545	29130545	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	72	536	1	ENST00000328354.6:c.165del	p.Ser56AlafsTer5	p.S56Afs*5	ENST00000328354	NM_007194.3	55	tcC/tc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	93	336	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156846307	156846307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			996	61	405	1	ENST00000524377.1:c.1748G>T	p.Arg583Leu	p.R583L	ENST00000524377	NM_002529.3	583	cGc/cTc																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32172127	32172127	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	76	392	0	ENST00000375023.3:c.2905C>A	p.Leu969Ile	p.L969I	ENST00000375023	NM_004557.3	969	Ctc/Atc																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108224493	108224493	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	32	311	0	ENST00000278616.4:c.8672G>A	p.Gly2891Asp	p.G2891D	ENST00000278616	NM_000051.3	2891	gGt/gAt																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1220449	1220449	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	187	446	0	ENST00000326873.7:c.542A>G	p.Asn181Ser	p.N181S	ENST00000326873	NM_000455.4	181	aAc/aGc																																													NEWRECORD																																		
ICOSLG	23308	MSKCC	GRCh37	21	45655437	45655437	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	83	188	0	ENST00000407780.3:c.415A>T	p.Ser139Cys	p.S139C	ENST00000407780	NM_001283052.1	139	Agc/Tgc																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108235833	108235833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	38	400	1	ENST00000278616.4:c.8875del	p.Asp2959ThrfsTer4	p.D2959Tfs*4	ENST00000278616	NM_000051.3	2959	Gac/ac																																													NEWRECORD																																		
HIST1H3D	8351	MSKCC	GRCh37	6	26197275	26197276	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1837	134	951	0	ENST00000356476.2:c.203dup	p.Gln69ProfsTer6	p.Q69Pfs*6	ENST00000356476		68	ttc/ttTc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	344	647	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89712016	89712019	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTA	AGTA	-			P-0006388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	65	145	0	ENST00000371953.3:c.634+3_634+6delAAGT		p.X212_splice	ENST00000371953	NM_000314.4	212																																														NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0010673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	143	251	1	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	105	161	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																													NEWRECORD																																		
CSF1R	1436	MSKCC	GRCh37	5	149459777	149459777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	117	186	0	ENST00000286301.3:c.430C>T	p.Arg144Cys	p.R144C	ENST00000286301	NM_005211.3	144	Cgt/Tgt																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67473792	67473792	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0010673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	133	152	0	ENST00000327367.4:c.871+1G>T		p.X291_splice	ENST00000327367	NM_005902.3	291																																														NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45375029	45375030	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGTTCTGAGT			P-0010673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	98	193	0	ENST00000262160.6:c.803_813dup	p.Ala272ThrfsTer10	p.A272Tfs*10	ENST00000262160	NM_005901.5	271	-/ACTCAGAACCT																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70405943	70405944	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	119	409	0	ENST00000373644.4:c.3461dup	p.Ser1155IlefsTer18	p.S1155Ifs*18	ENST00000373644	NM_030625.2	1153	acc/aCcc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1225	144	819	0	ENST00000346208.3:c.1220_1221insA	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcAg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579357	7579358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGAAAC			P-0011563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	239	466	0	ENST00000269305.4:c.323_329dup	p.Leu111PhefsTer40	p.L111Ffs*40	ENST00000269305	NM_001126112.2	110	cgt/cgGTTTCCGt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0011563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	255	374	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
CDKN2B	1030	MSKCC	GRCh37	9	22006194	22006194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	68	321	0	ENST00000276925.6:c.209C>T	p.Ala70Val	p.A70V	ENST00000276925	NM_004936.3	70	gCg/gTg																																													NEWRECORD																																		
SHQ1	55164	MSKCC	GRCh37	3	72799759	72799759	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	134	457	0	ENST00000325599.8:c.1410C>G	p.Asp470Glu	p.D470E	ENST00000325599	NM_018130.2	470	gaC/gaG																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153245452	153245452	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	246	420	0	ENST00000281708.4:c.1739A>G	p.His580Arg	p.H580R	ENST00000281708	NM_033632.3	580	cAc/cGc																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95574374	95574379	+	inframe_deletion	In_Frame_Del	DEL	CAACTC	CAACTC	-			P-0011563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	66	317	0	ENST00000343455.3:c.2488_2493del	p.Glu830_Leu831del	p.E830_L831del	ENST00000343455	NM_177438.2	830	GAGTTG/-																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0013600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	94	431	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0013600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	198	449	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																													NEWRECORD																																		
TCF3	6929	MSKCC	GRCh37	19	1622206	1622206	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	189	640	1	ENST00000344749.5:c.669del	p.Ser224GlnfsTer60	p.S224Qfs*60	ENST00000344749	NM_001136139.2	223	ccC/cc																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131895034	131895034	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	111	354	2	ENST00000265335.6:c.188G>T	p.Gly63Val	p.G63V	ENST00000265335		63	gGa/gTa																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0010800-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	18	388	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63700141	63700141	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010800-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	36	520	0	ENST00000279873.7:c.476A>T	p.Asp159Val	p.D159V	ENST00000279873	NM_032199.2	159	gAc/gTc																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	12016666	12016666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010800-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	28	638	0	ENST00000353533.5:c.802C>T	p.Pro268Ser	p.P268S	ENST00000353533	NM_003010.3	268	Cca/Tca																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68835590	68835591	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010800-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	50	836	0	ENST00000261769.5:c.183dup	p.Gly62ArgfsTer32	p.G62Rfs*32	ENST00000261769	NM_004360.3	61	acc/aCcc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0001673-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			416	180	596	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0001673-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	90	407	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0001673-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	224	530	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2966397	2966397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001673-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	22	545	2	ENST00000396946.4:c.1783G>A	p.Gly595Arg	p.G595R	ENST00000396946	NM_032415.4	595	Ggg/Agg																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2136380	2136380	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0001673-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			176	47	401	0	ENST00000219476.3:c.4849G>C	p.Ala1617Pro	p.A1617P	ENST00000219476	NM_000548.3	1617	Gcc/Ccc																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2138140	2138140	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0001673-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	53	467	0	ENST00000219476.3:c.5160T>G	p.Asn1720Lys	p.N1720K	ENST00000219476	NM_000548.3	1720	aaT/aaG																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56492793	56492793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001673-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			567	154	542	0	ENST00000407977.2:c.146G>A	p.Arg49Lys	p.R49K	ENST00000407977		49	aGa/aAa																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15272201	15272202	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0001673-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			120	21	196	0	ENST00000263388.2:c.6237dup	p.Arg2080AlafsTer15	p.R2080Afs*15	ENST00000263388	NM_000435.2	2079	-/G																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0011189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1271	158	467	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720833	89720836	+	frameshift_variant	Frame_Shift_Del	DEL	AAAT	AAAT	-			P-0011189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	55	199	0	ENST00000371953.3:c.987_990delTAAA	p.Asn329LysfsTer14	p.N329Kfs*14	ENST00000371953	NM_000314.4	328	gcAAAT/gc																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0011189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	285	385	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604778	48604778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767383		P-0011189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	162	431	0	ENST00000342988.3:c.1600C>T	p.Gln534Ter	p.Q534*	ENST00000342988	NM_005359.5	534	Cag/Tag																																													NEWRECORD																																		
NPM1	4869	MSKCC	GRCh37	5	170814959	170814959	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	69	232	0	ENST00000296930.5:c.7G>C	p.Asp3His	p.D3H	ENST00000296930	NM_002520.6	3	Gat/Cat																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176707822	176707822	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	123	444	0	ENST00000439151.2:c.5879C>G	p.Thr1960Arg	p.T1960R	ENST00000439151	NM_022455.4	1960	aCa/aGa																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47039419	47039419	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	160	531	0	ENST00000329236.7:c.811A>T	p.Ile271Phe	p.I271F	ENST00000329236	NM_001204466.1	271	Atc/Ttc																																													NEWRECORD																																		
STAT5A	6776	MSKCC	GRCh37	17	40441468	40441469	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGCT			P-0011189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	152	546	0	ENST00000345506.4:c.44_48dup	p.Gln17CysfsTer69	p.Q17Cfs*69	ENST00000345506	NM_003152.3	13	-/GCGCT																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	100	497	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47041720	47041720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	137	320	0	ENST00000329236.7:c.1711C>T	p.Gln571Ter	p.Q571*	ENST00000329236	NM_001204466.1	571	Caa/Taa																																													NEWRECORD																																		
PMS1	5378	MSKCC	GRCh37	2	190728705	190728705	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	139	481	0	ENST00000441310.2:c.2093A>T	p.Gln698Leu	p.Q698L	ENST00000441310	NM_000534.4	698	cAg/cTg																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1223003	1223003	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	97	369	0	ENST00000326873.7:c.941del	p.Pro314LeufsTer22	p.P314Lfs*22	ENST00000326873	NM_000455.4	314	Cct/ct																																													NEWRECORD																																		
NFKBIA	4792	MSKCC	GRCh37	14	35872951	35872951	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1218	200	1077	0	ENST00000216797.5:c.281T>C	p.Ile94Thr	p.I94T	ENST00000216797	NM_020529.2	94	aTc/aCc																																													NEWRECORD																																		
GPS2	2874	MSKCC	GRCh37	17	7218349	7218349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	144	710	0	ENST00000380728.2:c.23C>T	p.Pro8Leu	p.P8L	ENST00000380728		8	cCc/cTc																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45372144	45372144	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	124	606	0	ENST00000262160.6:c.1025G>T	p.Gly342Val	p.G342V	ENST00000262160	NM_005901.5	342	gGt/gTt																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40743935	40743935	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	133	479	2	ENST00000373198.4:c.3060G>A	p.Trp1020Ter	p.W1020*	ENST00000373198	NM_133170.3	1020	tgG/tgA																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10599926	10599927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	185	770	0	ENST00000171111.5:c.1649_1650insA	p.Met550IlefsTer24	p.M550Ifs*24	ENST00000171111	NM_203500.1	550	atg/atAg																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115112164	115112164	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	108	584	0	ENST00000257566.3:c.1576del	p.Ala526ProfsTer106	p.A526Pfs*106	ENST00000257566	NM_016569.3	526	Gcc/cc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	17	459	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0013021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	21	611	1	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49445944	49445944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	37	745	0	ENST00000301067.7:c.1522G>A	p.Glu508Lys	p.E508K	ENST00000301067	NM_003482.3	508	Gaa/Aaa																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36259087	36259150	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCGGCCTCGCCGGCCTCCGCCTGTCCTCCCACCACCCTCTCCGGGCCAGTACCTTGAAAGCGA	CCCGGCCTCGCCGGCCTCCGCCTGTCCTCCCACCACCCTCTCCGGGCCAGTACCTTGAAAGCGA	-			P-0013021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	15	377	0	ENST00000300305.3:c.341_351+53del		p.X114_splice	ENST00000300305		114																																														NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971031	21971037	+	protein_altering_variant	In_Frame_Del	DEL	GGCATCG	GGCATCG	C			P-0013021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	28	384	0	ENST00000304494.5:c.321_327delinsG	p.Asp108_Ala109del	p.D108_A109del	ENST00000304494	NM_000077.4	107	cgCGATGCC/cgG																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108129753	108129753	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001829-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	29	468	0	ENST00000278616.4:c.2417T>G	p.Leu806Trp	p.L806W	ENST00000278616	NM_000051.3	806	tTg/tGg																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16237609	16237610	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GATG			P-0001829-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	28	324	0	ENST00000375759.3:c.1058_1061dup	p.Leu355TrpfsTer5	p.L355Wfs*5	ENST00000375759	NM_015001.2	352	-/GATG																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579359	7579359	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587780066		P-0014649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1926	181	705	0	ENST00000269305.4:c.328del	p.Arg110ValfsTer13	p.R110Vfs*13	ENST00000269305	NM_001126112.2	110	Cgt/gt																																													NEWRECORD																																		
IKBKE	9641	MSKCC	GRCh37	1	206649665	206649665	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1855	193	751	2	ENST00000367120.3:c.500A>T	p.Asp167Val	p.D167V	ENST00000367120	NM_014002.3	167	gAt/gTt																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	12016675	12016675	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0014649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	66	384	1	ENST00000353533.5:c.811G>A	p.Ala271Thr	p.A271T	ENST00000353533	NM_003010.3	271	Gca/Aca																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16056703	16056704	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	106	407	0	ENST00000268712.3:c.738dupA	p.Ala247SerfsTer6	p.A247Sfs*6	ENST00000268712	NM_006311.3	246	-/A																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37627327	37627327	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2472	577	681	0	ENST00000447079.4:c.1242G>C	p.Lys414Asn	p.K414N	ENST00000447079	NM_015083.1	414	aaG/aaC																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000804-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			250	33	206	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	246	461	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42795608	42795609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0014363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	343	816	0	ENST00000575354.2:c.2694dupC	p.Lys899GlnfsTer32	p.K899Qfs*32	ENST00000575354	NM_015125.3	896	-/C																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2127724	2127724	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145332426		P-0014363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	197	319	1	ENST00000219476.3:c.2963G>A	p.Arg988His	p.R988H	ENST00000219476	NM_000548.3	988	cGc/cAc																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	10274052	10274052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	324	679	2	ENST00000330684.3:c.217C>A	p.Leu73Met	p.L73M	ENST00000330684	NM_001134407.1	73	Ctg/Atg																																													NEWRECORD																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52724303	52724303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	227	492	0	ENST00000322088.6:c.1435C>T	p.His479Tyr	p.H479Y	ENST00000322088	NM_014225.5	479	Cat/Tat																																													NEWRECORD																																		
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0004654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	212	326	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0004654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	211	396	0	ENST00000346208.3:c.1002_1003dup	p.Asp335GlyfsTer21	p.D335Gfs*21	ENST00000346208		333	-/GG																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0000777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			117	349	226	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173345	112173345	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			139	95	380	0	ENST00000257430.4:c.2054G>A	p.Trp685Ter	p.W685*	ENST00000257430	NM_000038.5	685	tGg/tAg																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95572022	95572022	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	86	396	0	ENST00000343455.3:c.3086A>G	p.Asn1029Ser	p.N1029S	ENST00000343455	NM_177438.2	1029	aAt/aGt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			87	35	121	0	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																													NEWRECORD																																		
PAK1	5058	MSKCC	GRCh37	11	77066758	77066758	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006992-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	494	646	1	ENST00000356341.3:c.727A>C	p.Lys243Gln	p.K243Q	ENST00000356341	NM_002576.4	243	Aag/Cag																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006992-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	229	223	0	ENST00000346208.3:c.1300dup	p.His434ProfsTer73	p.H434Pfs*73	ENST00000346208		433	cac/caCc																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1183	108	539	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1491	256	819	0	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1239	213	747	2	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs68130327		P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	95	273	0	ENST00000269305.4:c.532delC	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1023835002		P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	206	336	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	18	123	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	125	410	1	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27097622	27097622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	108	502	1	ENST00000324856.7:c.3216del	p.Lys1072AsnfsTer21	p.K1072Nfs*21	ENST00000324856	NM_006015.4	1071	Aaa/aa																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	56	411	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32953632	32953633	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1216	128	694	0	ENST00000380152.3:c.8940dupA	p.Glu2981ArgfsTer37	p.E2981Rfs*37	ENST00000380152		2978	tca/tcAa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1213	73	564	3	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	96	467	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																													NEWRECORD																																		
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	88	383	1	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																													NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	396908	396908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	163	458	1	ENST00000262320.3:c.118G>A	p.Ala40Thr	p.A40T	ENST00000262320	NM_003502.3	40	Gcc/Acc																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1307	229	605	2	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	44	351	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																													NEWRECORD																																		
HRAS	3265	MSKCC	GRCh37	11	533838	533838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	153	450	2	ENST00000311189.7:c.218G>A	p.Arg73His	p.R73H	ENST00000311189		73	cGc/cAc																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	120	504	0	ENST00000250448.2:c.655C>T	p.Arg219Cys	p.R219C	ENST00000250448	NM_004496.3	219	Cgc/Tgc																																													NEWRECORD																																		
IRF4	3662	MSKCC	GRCh37	6	393357	393357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	63	305	2	ENST00000380956.4:c.205G>A	p.Ala69Thr	p.A69T	ENST00000380956	NM_001195286.1	69	Gcg/Acg																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156830754	156830754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	14	59	0	ENST00000524377.1:c.28C>T	p.Leu10Phe	p.L10F	ENST00000524377	NM_002529.3	10	Ctt/Ttt																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212543850	212543850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	83	331	0	ENST00000342788.4:c.1549C>T	p.Pro517Ser	p.P517S	ENST00000342788	NM_005235.2	517	Cca/Tca																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225370789	225370789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	155	528	0	ENST00000264414.4:c.1090C>T	p.Arg364Cys	p.R364C	ENST00000264414	NM_003590.4	364	Cgt/Tgt																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138461565	138461565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	162	470	0	ENST00000289153.2:c.456G>A	p.Met152Ile	p.M152I	ENST00000289153	NM_006219.2	152	atG/atA																																													NEWRECORD																																		
FOXL2	668	MSKCC	GRCh37	3	138664838	138664838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	18	37	0	ENST00000330315.3:c.727G>A	p.Ala243Thr	p.A243T	ENST00000330315	NM_023067.3	243	Gct/Act																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66509110	66509110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	123	469	0	ENST00000273854.3:c.217C>A	p.Leu73Met	p.L73M	ENST00000273854	NM_004439.5	73	Ctg/Atg																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187539978	187539978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	124	365	0	ENST00000441802.2:c.7762G>A	p.Asp2588Asn	p.D2588N	ENST00000441802	NM_005245.3	2588	Gat/Aat																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112102945	112102945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	177	436	1	ENST00000257430.4:c.280C>T	p.Arg94Cys	p.R94C	ENST00000257430	NM_000038.5	94	Cgt/Tgt																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2985462	2985462	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	88	457	0	ENST00000396946.4:c.349A>G	p.Thr117Ala	p.T117A	ENST00000396946	NM_032415.4	117	Acc/Gcc																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140534429	140534429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	43	420	0	ENST00000288602.6:c.484C>T	p.Pro162Ser	p.P162S	ENST00000288602	NM_004333.4	162	Ccc/Tcc																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145739881	145739881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	149	430	1	ENST00000428558.2:c.1649C>T	p.Ala550Val	p.A550V	ENST00000428558	NM_004260.3	550	gCg/gTg																																													NEWRECORD																																		
CDKN2B	1030	MSKCC	GRCh37	9	22006005	22006005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	106	449	0	ENST00000276925.6:c.398G>A	p.Arg133His	p.R133H	ENST00000276925	NM_004936.3	133	cGc/cAc																																													NEWRECORD																																		
FGF19	9965	MSKCC	GRCh37	11	69518485	69518485	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	31	228	1	ENST00000294312.3:c.160G>T	p.Gly54Trp	p.G54W	ENST00000294312	NM_005117.2	54	Ggg/Tgg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108114823	108114823	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	56	422	0	ENST00000278616.4:c.640T>C	p.Ser214Pro	p.S214P	ENST00000278616	NM_000051.3	214	Tcc/Ccc																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	475143	475143	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	141	551	0	ENST00000399788.2:c.494T>C	p.Ile165Thr	p.I165T	ENST00000399788	NM_001042603.1	165	aTt/aCt																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18524116	18524116	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	51	426	0	ENST00000266497.5:c.1628T>C	p.Ile543Thr	p.I543T	ENST00000266497		543	aTc/aCc																																													NEWRECORD																																		
SMARCD1	6602	MSKCC	GRCh37	12	50480076	50480076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	122	409	0	ENST00000394963.4:c.310G>A	p.Ala104Thr	p.A104T	ENST00000394963	NM_003076.4	104	Gcc/Acc																																													NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91304245	91304245	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	253	580	0	ENST00000355112.3:c.1642C>A	p.Gln548Lys	p.Q548K	ENST00000355112	NM_000057.2	548	Caa/Aaa																																													NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	338210	338210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1302	113	611	0	ENST00000262320.3:c.2501G>T	p.Gly834Val	p.G834V	ENST00000262320	NM_003502.3	834	gGg/gTg																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3781269	3781269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	173	447	1	ENST00000262367.5:c.5096G>A	p.Gly1699Asp	p.G1699D	ENST00000262367	NM_004380.2	1699	gGc/gAc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578421	7578421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	38	312	0	ENST00000269305.4:c.509C>T	p.Thr170Met	p.T170M	ENST00000269305	NM_001126112.2	170	aCg/aTg																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41546105	41546105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	51	219	0	ENST00000263253.7:c.2720C>T	p.Ala907Val	p.A907V	ENST00000263253	NM_001429.3	907	gCt/gTt																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39932039	39932039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	156	224	0	ENST00000378444.4:c.2560G>A	p.Ala854Thr	p.A854T	ENST00000378444	NM_001123385.1	854	Gcc/Acc																																													NEWRECORD																																		
TNFAIP3	7128	MSKCC	GRCh37	6	138199945	138199945	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	77	168	1	ENST00000237289.4:c.1368delG	p.Pro457LeufsTer20	p.P457Lfs*20	ENST00000237289	NM_001270507.1	455	Ggg/gg																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32163554	32163554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	75	360	0	ENST00000375023.3:c.5672del	p.Gly1891AlafsTer13	p.G1891Afs*13	ENST00000375023	NM_004557.3	1891	gGc/gc																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16262680	16262680	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	27	227	0	ENST00000375759.3:c.9950delC	p.Pro3317ArgfsTer83	p.P3317Rfs*83	ENST00000375759	NM_015001.2	3315	caC/ca																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37619031	37619032	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	86	386	0	ENST00000447079.4:c.711dup	p.Ser238LeufsTer10	p.S238Lfs*10	ENST00000447079	NM_015083.1	236	agc/agCc																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3820668	3820668	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	65	367	0	ENST00000262367.5:c.2783del	p.Pro928ArgfsTer70	p.P928Rfs*70	ENST00000262367	NM_004380.2	928	cCg/cg																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0000964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	55	392	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	27	182	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187524757	187524757	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			436	57	355	0	ENST00000441802.2:c.10923C>A	p.His3641Gln	p.H3641Q	ENST00000441802	NM_005245.3	3641	caC/caA																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16257841	16257842	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0000964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			166	32	209	0	ENST00000375759.3:c.5111dup	p.Gly1705ArgfsTer6	p.G1705Rfs*6	ENST00000375759	NM_015001.2	1702	-/C																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32914715	32914719	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGT	AAAGT	-			P-0000964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			382	127	415	0	ENST00000380152.3:c.6223_6227del	p.Lys2075Ter	p.K2075*	ENST00000380152		2075	AAAGTt/t																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	268	654	0	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	110	299	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	59	234	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																													NEWRECORD																																		
SYK	6850	MSKCC	GRCh37	9	93650109	93650109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	114	412	0	ENST00000375746.1:c.1660G>A	p.Asp554Asn	p.D554N	ENST00000375746	NM_001174167.1	554	Gat/Aat																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	77	278	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	127	521	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	26	355	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138426123	138426123	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1217537873		P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	33	361	0	ENST00000289153.2:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000289153	NM_006219.2	470	Gaa/Aaa																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49424427	49424427	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs577303074		P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	112	437	1	ENST00000301067.7:c.13796C>T	p.Ala4599Val	p.A4599V	ENST00000301067	NM_003482.3	4599	gCg/gTg																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	122	264	1	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139417343	139417343	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150737112		P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	76	265	0	ENST00000277541.6:c.701G>A	p.Arg234His	p.R234H	ENST00000277541	NM_017617.3	234	cGc/cAc																																													NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1807506	1807506	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768385286		P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	79	600	0	ENST00000260795.2:c.1675G>A	p.Ala559Thr	p.A559T	ENST00000260795		559	Gcc/Acc																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	41961399	41961399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	163	594	0	ENST00000219905.7:c.307C>T	p.Arg103Cys	p.R103C	ENST00000219905	NM_001164273.1	103	Cgc/Tgc																																													NEWRECORD																																		
PIK3CD	5293	MSKCC	GRCh37	1	9780181	9780181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	104	533	0	ENST00000377346.4:c.1351G>A	p.Glu451Lys	p.E451K	ENST00000377346	NM_005026.3	451	Gag/Aag																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11272470	11272470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	96	304	2	ENST00000361445.4:c.3460C>T	p.Arg1154Trp	p.R1154W	ENST00000361445	NM_004958.3	1154	Cgg/Tgg																																													NEWRECORD																																		
IKBKE	9641	MSKCC	GRCh37	1	206652308	206652308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	137	446	1	ENST00000367120.3:c.1015G>A	p.Val339Met	p.V339M	ENST00000367120	NM_014002.3	339	Gtg/Atg																																													NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1808406	1808406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	62	459	0	ENST00000260795.2:c.2164G>A	p.Asp722Asn	p.D722N	ENST00000260795		722	Gac/Aac																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187518086	187518086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	138	470	1	ENST00000441802.2:c.12608G>A	p.Arg4203His	p.R4203H	ENST00000441802	NM_005245.3	4203	cGt/cAt																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2954933	2954933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	151	489	1	ENST00000396946.4:c.2777C>T	p.Pro926Leu	p.P926L	ENST00000396946	NM_032415.4	926	cCg/cTg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139402511	139402511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	122	549	1	ENST00000277541.6:c.3406G>A	p.Gly1136Ser	p.G1136S	ENST00000277541	NM_017617.3	1136	Ggc/Agc																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49420817	49420817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	130	324	0	ENST00000301067.7:c.14932C>T	p.Arg4978Cys	p.R4978C	ENST00000301067	NM_003482.3	4978	Cgc/Tgc																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50909689	50909689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	141	657	0	ENST00000440232.2:c.1409G>A	p.Arg470His	p.R470H	ENST00000440232	NM_002691.3	470	cGc/cAc																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142185334	142185334	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	62	247	0	ENST00000350721.4:c.6729del	p.Phe2243LeufsTer8	p.F2243Lfs*8	ENST00000350721	NM_001184.3	2243	ttT/tt																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17955111	17955112	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	110	458	1	ENST00000458235.1:c.115dupC	p.Gln39ProfsTer13	p.Q39Pfs*13	ENST00000458235	NM_000215.3	39	cag/cCag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0004629-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	86	775	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67569801	67569802	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0004629-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	135	683	0	ENST00000274335.5:c.463_464insTT	p.Ser155PhefsTer23	p.S155Ffs*23	ENST00000274335		154	-/TT																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004629-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	96	618	0	ENST00000257430.4:c.3856del	p.Glu1286LysfsTer2	p.E1286Kfs*2	ENST00000257430	NM_000038.5	1286	Gaa/aa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	23	329	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0010432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	11	254	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0010432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	37	617	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																													NEWRECORD																																		
ETV6	2120	MSKCC	GRCh37	12	12022535	12022535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	63	436	0	ENST00000396373.4:c.641C>T	p.Pro214Leu	p.P214L	ENST00000396373	NM_001987.4	214	cCg/cTg																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44942757	44942758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	47	406	0	ENST00000377967.4:c.3338dup	p.Ser1114IlefsTer37	p.S1114Ifs*37	ENST00000377967	NM_021140.2	1113	gta/gTta																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56492686	56492686	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0010432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	62	452	1	ENST00000407977.2:c.252+1G>A		p.X84_splice	ENST00000407977		84																																														NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	315	536	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0013286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	215	686	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7576882	7576883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	174	581	0	ENST00000269305.4:c.963dup	p.Pro322ThrfsTer15	p.P322Tfs*15	ENST00000269305	NM_001126112.2	321	-/A																																													NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50468269	50468269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	49	452	0	ENST00000331340.3:c.1504C>T	p.Arg502Trp	p.R502W	ENST00000331340	NM_006060.4	502	Cgg/Tgg																																													NEWRECORD																																		
CD276	80381	MSKCC	GRCh37	15	73995319	73995320	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	12	171	0	ENST00000318443.5:c.628dup	p.Val210GlyfsTer44	p.V210Gfs*44	ENST00000318443	NM_001024736.1	209	cgg/cGgg																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0013955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	61	117	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0013955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	107	324	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578440	7578440	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0013955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	119	378	0	ENST00000269305.4:c.490A>T	p.Lys164Ter	p.K164*	ENST00000269305	NM_001126112.2	164	Aag/Tag																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	11999013	11999013	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0013955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	97	272	0	ENST00000353533.5:c.513+2T>C		p.X171_splice	ENST00000353533	NM_003010.3	171																																														NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153245447	153245447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	279	407	0	ENST00000281708.4:c.1744T>C	p.Ser582Pro	p.S582P	ENST00000281708	NM_033632.3	582	Tcg/Ccg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023217	27023218	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCTA			P-0013955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	52	189	0	ENST00000324856.7:c.324_328dup	p.Arg110ThrfsTer6	p.R110Tfs*6	ENST00000324856	NM_006015.4	108	ggc/ggCCCTAc																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156834548	156834548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	157	549	1	ENST00000524377.1:c.316G>A	p.Val106Met	p.V106M	ENST00000524377	NM_002529.3	106	Gtg/Atg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108205726	108205726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	87	276	0	ENST00000278616.4:c.8041G>A	p.Val2681Met	p.V2681M	ENST00000278616	NM_000051.3	2681	Gtg/Atg																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9862771	9862771	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	163	448	0	ENST00000330684.3:c.2532G>T	p.Lys844Asn	p.K844N	ENST00000330684	NM_001134407.1	844	aaG/aaT																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175164	112175165	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACGAC			P-0013955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	59	162	0	ENST00000257430.4:c.3876_3880dup	p.Gln1294ArgfsTer13	p.Q1294Rfs*13	ENST00000257430	NM_000038.5	1291	-/ACGAC																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0014419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	99	613	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579536	7579537	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	145	801	0	ENST00000269305.4:c.150dup	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	50	-/T																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66231661	66231661	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	38	412	0	ENST00000273854.3:c.2039T>A	p.Val680Asp	p.V680D	ENST00000273854	NM_004439.5	680	gTt/gAt																																													NEWRECORD																																		
HIST1H3A	8350	MSKCC	GRCh37	6	26020889	26020889	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	86	352	0	ENST00000357647.3:c.172T>C	p.Ser58Pro	p.S58P	ENST00000357647	NM_003529.2	58	Tcc/Ccc																																													NEWRECORD																																		
SESN1	27244	MSKCC	GRCh37	6	109319885	109319885	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	33	624	0	ENST00000436639.2:c.803A>G	p.Tyr268Cys	p.Y268C	ENST00000436639	NM_014454.2	268	tAt/tGt																																													NEWRECORD																																		
INHBA	3624	MSKCC	GRCh37	7	41729946	41729946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	64	616	1	ENST00000242208.4:c.583G>T	p.Val195Leu	p.V195L	ENST00000242208	NM_002192.2	195	Gtg/Ttg																																													NEWRECORD																																		
LYN	4067	MSKCC	GRCh37	8	56922550	56922550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	35	572	0	ENST00000519728.1:c.1420G>A	p.Asp474Asn	p.D474N	ENST00000519728	NM_002350.3	474	Gac/Aac																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0004967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	210	596	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																													NEWRECORD																																		
INPP4A	3631	MSKCC	GRCh37	2	99149945	99149945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	177	572	1	ENST00000074304.5:c.257C>T	p.Thr86Met	p.T86M	ENST00000074304	NM_001134224.1	86	aCg/aTg																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67590403	67590403	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	27	520	0	ENST00000274335.5:c.1465G>T	p.Glu489Ter	p.E489*	ENST00000274335		489	Gaa/Taa																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9862749	9862749	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150316865		P-0004967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	650	635	1	ENST00000330684.3:c.2554G>A	p.Val852Met	p.V852M	ENST00000330684	NM_001134407.1	852	Gtg/Atg																																													NEWRECORD																																		
GATA1	2623	MSKCC	GRCh37	X	48652320	48652320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	477	392	2	ENST00000376670.3:c.991G>T	p.Ala331Ser	p.A331S	ENST00000376670	NM_002049.3	331	Gct/Tct																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579344	7579345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	271	585	0	ENST00000269305.4:c.342dup	p.His115AlafsTer34	p.H115Afs*34	ENST00000269305	NM_001126112.2	114	-/G																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0013015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	368	631	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55958804	55958804	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	150	610	0	ENST00000263923.4:c.3049G>C	p.Glu1017Gln	p.E1017Q	ENST00000263923	NM_002253.2	1017	Gag/Cag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112090645	112090645	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	99	369	0	ENST00000257430.4:c.58A>T	p.Asn20Tyr	p.N20Y	ENST00000257430	NM_000038.5	20	Aac/Tac																																													NEWRECORD																																		
SMARCD1	6602	MSKCC	GRCh37	12	50484337	50484338	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0013015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	150	550	0	ENST00000394963.4:c.1097_1098insAA	p.Met366IlefsTer36	p.M366Ifs*36	ENST00000394963	NM_003076.4	366	atg/atAAg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952139	178952148	+	frameshift_variant	Frame_Shift_Del	DEL	ATGCATTGAA	ATGCATTGAA	TG			P-0013015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	343	303	0	ENST00000263967.3:c.3194_3203delinsTG	p.His1065LeufsTer5	p.H1065Lfs*5	ENST00000263967	NM_006218.2	1065	cATGCATTGAAc/cTGc																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249017	55249018	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0001665-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			719	330	442	1	ENST00000275493.2:c.2317_2319dupCAC	p.His773dup	p.H773dup	ENST00000275493	NM_005228.3	773	ccc/ccCCAc																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25505463	25505463	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	147	230	0	ENST00000264709.3:c.295C>T	p.Pro99Ser	p.P99S	ENST00000264709	NM_175629.2	99	Ccc/Tcc																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180046668	180046668	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	130	224	0	ENST00000261937.6:c.2644A>C	p.Lys882Gln	p.K882Q	ENST00000261937	NM_182925.4	882	Aaa/Caa																																													NEWRECORD																																		
BMPR1A	657	MSKCC	GRCh37	10	88683192	88683192	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199907158		P-0003625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	46	76	0	ENST00000372037.3:c.1402G>A	p.Glu468Lys	p.E468K	ENST00000372037	NM_004329.2	468	Gaa/Aaa																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88423595	88423595	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	132	231	0	ENST00000360948.2:c.2240T>C	p.Phe747Ser	p.F747S	ENST00000360948	NM_001012338.2	747	tTc/tCc																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37676208	37676208	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0003625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	112	253	0	ENST00000447079.4:c.2964-1G>C		p.X988_splice	ENST00000447079	NM_015083.1	988																																														NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061225	38061242	+	inframe_deletion	In_Frame_Del	DEL	TCGAACATGTTGCCGGAG	TCGAACATGTTGCCGGAG	-			P-0003625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	234	171	0	ENST00000250448.2:c.747_764delCTCCGGCAACATGTTCGA	p.Asp249_Phe254del	p.D249_F254del	ENST00000250448	NM_004496.3	249	gaCTCCGGCAACATGTTCGAg/gag																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37618727	37618728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	299	268	0	ENST00000447079.4:c.405dupA	p.Val136SerfsTer21	p.V136Sfs*21	ENST00000447079	NM_015083.1	135	gaa/gAaa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	205	437	3	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	94	425	0	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16024505	16024505	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	212	597	0	ENST00000268712.3:c.1713delG	p.Arg572GlufsTer18	p.R572Efs*18	ENST00000268712	NM_006311.3	571	ggG/gg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49436102	49436102	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	17	115	0	ENST00000301067.7:c.5879del	p.Gly1960AlafsTer87	p.G1960Afs*87	ENST00000301067	NM_003482.3	1960	gGc/gc																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	149	545	1	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	138	438	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55370841	55370841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	61	321	2	ENST00000297316.4:c.143C>T	p.Ala48Val	p.A48V	ENST00000297316	NM_022454.3	48	gCg/gTg																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1322	309	898	5	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																													NEWRECORD																																		
HLA-A	3105	MSKCC	GRCh37	6	29910372	29910372	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	97	631	3	ENST00000376809.5:c.46delG	p.Ala16ProfsTer4	p.A16Pfs*4	ENST00000376809	NM_002116.7	14	tcG/tc																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151843775	151843775	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	232	418	0	ENST00000262189.6:c.13940delA	p.Lys4647SerfsTer12	p.K4647Sfs*12	ENST00000262189	NM_170606.2	4647	aAg/ag																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16260214	16260214	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	55	273	0	ENST00000375759.3:c.7484delC	p.Pro2495LeufsTer4	p.P2495Lfs*4	ENST00000375759	NM_015001.2	2493	agC/ag																																													NEWRECORD																																		
IDH1	3417	MSKCC	GRCh37	2	209116263	209116263	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	108	488	0	ENST00000345146.2:c.13delA	p.Ile5SerfsTer7	p.I5Sfs*7	ENST00000345146	NM_005896.2	5	Atc/tc																																													NEWRECORD																																		
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	108	370	1	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56440741	56440741	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	149	562	0	ENST00000407977.2:c.477G>A	p.Trp159Ter	p.W159*	ENST00000407977		159	tgG/tgA																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133759623	133759623	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	140	626	0	ENST00000318560.5:c.1950del	p.Leu651TrpfsTer43	p.L651Wfs*43	ENST00000318560	NM_005157.4	649	aCc/ac																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971133	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	58	265	1	ENST00000304494.5:c.225delC	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	75	ccC/cc																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157528971	157528972	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	91	311	0	ENST00000346085.5:c.6700_6701delCT	p.Leu2234GlyfsTer7	p.L2234Gfs*7	ENST00000346085	NM_020732.3	2232	aaCTct/aact																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32163554	32163554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	75	419	2	ENST00000375023.3:c.5672del	p.Gly1891AlafsTer13	p.G1891Afs*13	ENST00000375023	NM_004557.3	1891	gGc/gc																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66467573	66467573	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	109	436	0	ENST00000273854.3:c.696del	p.Lys232AsnfsTer36	p.K232Nfs*36	ENST00000273854	NM_004439.5	232	aaA/aa																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	129	480	0	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																													NEWRECORD																																		
RAD54L	8438	MSKCC	GRCh37	1	46726423	46726423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	79	319	0	ENST00000371975.4:c.502G>A	p.Val168Ile	p.V168I	ENST00000371975	NM_003579.3	168	Gtc/Atc																																													NEWRECORD																																		
EPCAM	4072	MSKCC	GRCh37	2	47602438	47602438	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	147	509	0	ENST00000263735.4:c.491C>T	p.Thr164Ile	p.T164I	ENST00000263735	NM_002354.2	164	aCt/aTt																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30713598	30713598	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	99	310	0	ENST00000359013.4:c.998T>C	p.Leu333Pro	p.L333P	ENST00000359013	NM_001024847.2	333	cTg/cCg																																													NEWRECORD																																		
RHOA	387	MSKCC	GRCh37	3	49400021	49400021	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1041	125	629	0	ENST00000418115.1:c.316T>G	p.Phe106Val	p.F106V	ENST00000418115	NM_001664.2	106	Ttc/Gtc																																													NEWRECORD																																		
BAP1	8314	MSKCC	GRCh37	3	52436342	52436342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	103	546	2	ENST00000460680.1:c.2152C>T	p.Arg718Trp	p.R718W	ENST00000460680	NM_004656.3	718	Cgg/Tgg																																													NEWRECORD																																		
CSF1R	1436	MSKCC	GRCh37	5	149460328	149460328	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	65	317	0	ENST00000286301.3:c.307+2T>C		p.X103_splice	ENST00000286301	NM_005211.3	103																																														NEWRECORD																																		
MYC	4609	MSKCC	GRCh37	8	128752812	128752812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	99	323	0	ENST00000377970.2:c.973G>A	p.Ala325Thr	p.A325T	ENST00000377970	NM_002467.4	325	Gca/Aca																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46230406	46230406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	171	377	0	ENST00000334344.6:c.740G>A	p.Arg247His	p.R247H	ENST00000334344	NM_152641.2	247	cGt/cAt																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49438060	49438060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	352	533	1	ENST00000301067.7:c.5111G>A	p.Arg1704Gln	p.R1704Q	ENST00000301067	NM_003482.3	1704	cGg/cAg																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57859025	57859025	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1304	308	822	1	ENST00000228682.2:c.521T>C	p.Phe174Ser	p.F174S	ENST00000228682	NM_005269.2	174	tTc/tCc																																													NEWRECORD																																		
LATS2	26524	MSKCC	GRCh37	13	21562783	21562783	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	55	201	0	ENST00000382592.4:c.1136A>G	p.Asp379Gly	p.D379G	ENST00000382592	NM_014572.2	379	gAc/gGc																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95560460	95560460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	56	201	0	ENST00000343455.3:c.5129C>T	p.Ala1710Val	p.A1710V	ENST00000343455	NM_177438.2	1710	gCg/gTg																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	41961418	41961418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1372	266	959	2	ENST00000219905.7:c.326G>A	p.Arg109His	p.R109H	ENST00000219905	NM_001164273.1	109	cGt/cAt																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3819176	3819176	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	112	632	0	ENST00000262367.5:c.3059A>G	p.Glu1020Gly	p.E1020G	ENST00000262367	NM_004380.2	1020	gAg/gGg																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3832693	3832693	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs61754521		P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	131	521	0	ENST00000262367.5:c.1565A>G	p.Asn522Ser	p.N522S	ENST00000262367	NM_004380.2	522	aAc/aGc																																													NEWRECORD																																		
YES1	7525	MSKCC	GRCh37	18	747947	747947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	146	553	1	ENST00000314574.4:c.443C>T	p.Ala148Val	p.A148V	ENST00000314574	NM_005433.3	148	gCg/gTg																																													NEWRECORD																																		
BCL2	596	MSKCC	GRCh37	18	60985571	60985571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	54	274	0	ENST00000333681.4:c.329G>A	p.Arg110His	p.R110H	ENST00000333681		110	cGc/cAc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5214637	5214637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	338	657	7	ENST00000357368.4:c.4429C>T	p.Arg1477Cys	p.R1477C	ENST00000357368	NM_002850.3	1477	Cgt/Tgt																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31020695	31020695	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	89	371	0	ENST00000375687.4:c.992A>G	p.His331Arg	p.H331R	ENST00000375687	NM_015338.5	331	cAt/cGt																																													NEWRECORD																																		
TOP1	7150	MSKCC	GRCh37	20	39704810	39704810	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	96	224	0	ENST00000361337.2:c.156-1G>A		p.X52_splice	ENST00000361337	NM_003286.2	52																																														NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39914723	39914723	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	231	399	4	ENST00000378444.4:c.4639C>T	p.Arg1547Ter	p.R1547*	ENST00000378444	NM_001123385.1	1547	Cga/Tga																																													NEWRECORD																																		
MLH1	4292	MSKCC	GRCh37	3	37061814	37061878	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCAGAATGTGGATGTTAATGTGCACCCCACAAAGCATGAAGTTCACTTCCTGCACGAGGAGAG	CCCCAGAATGTGGATGTTAATGTGCACCCCACAAAGCATGAAGTTCACTTCCTGCACGAGGAGAG	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	214	464	1	ENST00000231790.2:c.899_963del	p.Pro300HisfsTer40	p.P300Hfs*40	ENST00000231790	NM_000249.3	300	CCCCAGAATGTGGATGTTAATGTGCACCCCACAAAGCATGAAGTTCACTTCCTGCACGAGGAGAGc/c																																													NEWRECORD																																		
MALT1	10892	MSKCC	GRCh37	18	56348561	56348561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1272	231	816	1	ENST00000348428.3:c.374del	p.Pro125GlnfsTer3	p.P125Qfs*3	ENST00000348428	NM_006785.3	123	agC/ag																																													NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215593635	215593635	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	126	429	0	ENST00000260947.4:c.2099del	p.Gly700AlafsTer14	p.G700Afs*14	ENST00000260947	NM_000465.2	700	gGc/gc																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157505370	157505371	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	132	431	0	ENST00000346085.5:c.3356dup	p.Asn1119LysfsTer6	p.N1119Kfs*6	ENST00000346085	NM_020732.3	1117	-/A																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59760684	59760685	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	166	546	1	ENST00000259008.2:c.3722dup	p.Asn1241LysfsTer2	p.N1241Kfs*2	ENST00000259008	NM_032043.2	1241	aat/aaAt																																													NEWRECORD																																		
EGFL7	51162	MSKCC	GRCh37	9	139564755	139564755	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	85	470	1	ENST00000308874.7:c.549del	p.Arg184GlyfsTer13	p.R184Gfs*13	ENST00000308874		182	Ccc/cc																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42797806	42797807	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	131	437	0	ENST00000575354.2:c.3862dup	p.Glu1288GlyfsTer56	p.E1288Gfs*56	ENST00000575354	NM_015125.3	1286	-/G																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49940112	49940112	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	204	722	4	ENST00000296474.3:c.931del	p.Ala311ProfsTer27	p.A311Pfs*27	ENST00000296474	NM_002447.2	311	Gcc/cc																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49443512	49443512	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	92	423	0	ENST00000301067.7:c.3859del	p.Glu1287ArgfsTer43	p.E1287Rfs*43	ENST00000301067	NM_003482.3	1287	Gag/ag																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49435274	49435275	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	96	386	0	ENST00000301067.7:c.6278_6279del	p.Ile2093SerfsTer3	p.I2093Sfs*3	ENST00000301067	NM_003482.3	2093	aTA/a																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533942	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	46	203	0	ENST00000307078.5:c.1212_1215del	p.Glu405AlafsTer52	p.E405Afs*52	ENST00000307078	NM_004655.3	404	agAGAG/ag																																													NEWRECORD																																		
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	219	702	3	ENST00000262741.5:c.883delA	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16255266	16255266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	131	298	1	ENST00000375759.3:c.2531G>A	p.Arg844Gln	p.R844Q	ENST00000375759	NM_015001.2	844	cGa/cAa																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	138	379	1	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25466800	25466800	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144689354		P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	112	371	0	ENST00000264709.3:c.1903C>T	p.Arg635Trp	p.R635W	ENST00000264709	NM_175629.2	635	Cgg/Tgg																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29443576	29443576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	87	322	1	ENST00000389048.3:c.3641G>A	p.Arg1214His	p.R1214H	ENST00000389048	NM_004304.4	1214	cGc/cAc																																													NEWRECORD																																		
INPP4A	3631	MSKCC	GRCh37	2	99154396	99154396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	120	426	3	ENST00000074304.5:c.538C>T	p.Arg180Trp	p.R180W	ENST00000074304	NM_001134224.1	180	Cgg/Tgg																																													NEWRECORD																																		
ERCC3	2071	MSKCC	GRCh37	2	128047345	128047345	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144491407		P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	91	398	1	ENST00000285398.2:c.577G>A	p.Val193Met	p.V193M	ENST00000285398	NM_000122.1	193	Gtg/Atg																																													NEWRECORD																																		
INHA	3623	MSKCC	GRCh37	2	220440111	220440111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	187	628	1	ENST00000243786.2:c.964C>T	p.Pro322Ser	p.P322S	ENST00000243786	NM_002191.3	322	Cca/Tca																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41275630	41275630	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	76	246	0	ENST00000349496.5:c.1525G>A	p.Ala509Thr	p.A509T	ENST00000349496	NM_001904.3	509	Gct/Act																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38944547	38944547	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	71	271	0	ENST00000357387.3:c.4913+1G>A		p.X1638_splice	ENST00000357387	NM_152756.3	1638																																														NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112111381	112111381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	72	258	1	ENST00000257430.4:c.478G>A	p.Ala160Thr	p.A160T	ENST00000257430	NM_000038.5	160	Gct/Act																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30672873	30672873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1262	230	745	2	ENST00000376406.3:c.4087C>T	p.Pro1363Ser	p.P1363S	ENST00000376406	NM_014641.2	1363	Cct/Tct																																													NEWRECORD																																		
PRDM1	639	MSKCC	GRCh37	6	106553146	106553146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	86	257	0	ENST00000369096.4:c.1111C>T	p.Arg371Trp	p.R371W	ENST00000369096	NM_001198.3	371	Cgg/Tgg																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	150004216	150004216	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	115	323	0	ENST00000253339.5:c.2009G>A	p.Arg670Gln	p.R670Q	ENST00000253339		670	cGg/cAg																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2952993	2952993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	83	350	2	ENST00000396946.4:c.2947G>A	p.Val983Met	p.V983M	ENST00000396946	NM_032415.4	983	Gtg/Atg																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128852114	128852114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200751953		P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	133	496	2	ENST00000249373.3:c.2186C>T	p.Ala729Val	p.A729V	ENST00000249373	NM_005631.4	729	gCg/gTg																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8521544	8521544	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	76	211	1	ENST00000356435.5:c.694C>T	p.Arg232Cys	p.R232C	ENST00000356435		232	Cgc/Tgc																																													NEWRECORD																																		
TGFBR1	7046	MSKCC	GRCh37	9	101894898	101894898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	126	337	0	ENST00000374994.4:c.451C>T	p.Arg151Cys	p.R151C	ENST00000374994	NM_004612.2	151	Cgc/Tgc																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133760559	133760559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	151	489	3	ENST00000318560.5:c.2882C>T	p.Pro961Leu	p.P961L	ENST00000318560	NM_005157.4	961	cCg/cTg																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114910810	114910810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1207	247	663	3	ENST00000543371.1:c.929C>T	p.Pro310Leu	p.P310L	ENST00000543371	NM_001198531.1	310	cCg/cTg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108216546	108216546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	134	347	0	ENST00000278616.4:c.8495G>A	p.Arg2832His	p.R2832H	ENST00000278616	NM_000051.3	2832	cGt/cAt																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118342691	118342691	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	73	275	0	ENST00000534358.1:c.817T>A	p.Leu273Ile	p.L273I	ENST00000534358	NM_005933.3	273	Tta/Ata																																													NEWRECORD																																		
ETV6	2120	MSKCC	GRCh37	12	12037474	12037474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	230	233	0	ENST00000396373.4:c.1105C>T	p.Arg369Trp	p.R369W	ENST00000396373	NM_001987.4	369	Cgg/Tgg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	196	245	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49436599	49436599	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs886041405		P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	138	465	2	ENST00000301067.7:c.5707C>T	p.Arg1903Ter	p.R1903*	ENST00000301067	NM_003482.3	1903	Cga/Tga																																													NEWRECORD																																		
SH2B3	10019	MSKCC	GRCh37	12	111886063	111886063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	408	618	3	ENST00000341259.2:c.1685G>A	p.Arg562Gln	p.R562Q	ENST00000341259	NM_005475.2	562	cGg/cAg																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103519174	103519174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	71	175	0	ENST00000355739.4:c.2512G>A	p.Val838Met	p.V838M	ENST00000355739	NM_000123.3	838	Gtg/Atg																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110435204	110435204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	93	325	0	ENST00000375856.3:c.3197C>T	p.Thr1066Ile	p.T1066I	ENST00000375856	NM_003749.2	1066	aCc/aTc																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88472565	88472565	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371959662		P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	88	406	1	ENST00000360948.2:c.1990G>A	p.Ala664Thr	p.A664T	ENST00000360948	NM_001012338.2	664	Gcc/Acc																																													NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	348223	348223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	57	259	1	ENST00000262320.3:c.1283C>T	p.Ser428Leu	p.S428L	ENST00000262320	NM_003502.3	428	tCg/tTg																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72830285	72830285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	112	467	0	ENST00000268489.5:c.6296C>T	p.Pro2099Leu	p.P2099L	ENST00000268489	NM_006885.3	2099	cCg/cTg																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81971386	81971386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	130	405	0	ENST00000359376.3:c.3076G>A	p.Ala1026Thr	p.A1026T	ENST00000359376	NM_002661.3	1026	Gca/Aca																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89346700	89346700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	147	446	1	ENST00000301030.4:c.6250G>A	p.Ala2084Thr	p.A2084T	ENST00000301030	NM_001256183.1	2084	Gcc/Acc																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89350233	89350233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1142	228	689	2	ENST00000301030.4:c.2717G>A	p.Arg906Gln	p.R906Q	ENST00000301030	NM_001256183.1	906	cGa/cAa																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89351736	89351736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	231	646	1	ENST00000301030.4:c.1214G>A	p.Arg405His	p.R405H	ENST00000301030	NM_001256183.1	405	cGt/cAt																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89851272	89851272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	136	434	0	ENST00000389301.3:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000389301	NM_000135.2	487	cGg/cAg																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16004609	16004609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	108	357	0	ENST00000268712.3:c.2645C>T	p.Thr882Met	p.T882M	ENST00000268712	NM_006311.3	882	aCg/aTg																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29661946	29661946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	113	254	0	ENST00000358273.4:c.5903G>A	p.Arg1968Gln	p.R1968Q	ENST00000358273	NM_001042492.2	1968	cGa/cAa																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	115	378	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37883554	37883554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	128	399	0	ENST00000269571.5:c.3166G>A	p.Gly1056Ser	p.G1056S	ENST00000269571		1056	Ggt/Agt																																													NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40354428	40354428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	199	696	0	ENST00000293328.3:c.2167G>A	p.Ala723Thr	p.A723T	ENST00000293328	NM_012448.3	723	Gcc/Acc																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41247928	41247928	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	155	356	1	ENST00000357654.3:c.605A>G	p.Gln202Arg	p.Q202R	ENST00000357654	NM_007294.3	202	cAa/cGa																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56440757	56440757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	108	306	1	ENST00000407977.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000407977		154	cCg/cTg																																													NEWRECORD																																		
CD79B	974	MSKCC	GRCh37	17	62007575	62007575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	161	520	1	ENST00000392795.3:c.292G>A	p.Glu98Lys	p.E98K	ENST00000392795	NM_001039933.1	98	Gaa/Aaa																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63530048	63530048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	139	365	1	ENST00000307078.5:c.2387G>A	p.Ser796Asn	p.S796N	ENST00000307078	NM_004655.3	796	aGc/aAc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5265025	5265025	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	113	340	0	ENST00000357368.4:c.562C>T	p.Arg188Ter	p.R188*	ENST00000357368	NM_002850.3	188	Cga/Tga																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15299946	15299946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	71	344	1	ENST00000263388.2:c.1232C>T	p.Thr411Met	p.T411M	ENST00000263388	NM_000435.2	411	aCg/aTg																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42791320	42791320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	86	325	1	ENST00000575354.2:c.380C>T	p.Thr127Met	p.T127M	ENST00000575354	NM_015125.3	127	aCg/aTg																																													NEWRECORD																																		
BCL2L1	598	MSKCC	GRCh37	20	30309466	30309466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	180	524	0	ENST00000307677.4:c.556G>A	p.Gly186Ser	p.G186S	ENST00000307677	NM_138578.1	186	Ggc/Agc																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40733337	40733337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	42	192	0	ENST00000373198.4:c.3469G>A	p.Asp1157Asn	p.D1157N	ENST00000373198	NM_133170.3	1157	Gat/Aat																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66905930	66905930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	113	221	2	ENST00000374690.3:c.1847G>A	p.Arg616His	p.R616H	ENST00000374690	NM_000044.3	616	cGt/cAt																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	49	240	0	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142217557	142217557	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	115	300	0	ENST00000350721.4:c.5440delA	p.Arg1814GlufsTer10	p.R1814Efs*10	ENST00000350721	NM_001184.3	1814	Aga/ga																																													NEWRECORD																																		
NPM1	4869	MSKCC	GRCh37	5	170819954	170819959	+	inframe_deletion	In_Frame_Del	DEL	GATGAT	GATGAT	-			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	97	259	0	ENST00000296930.5:c.501_506del	p.Asp167_Asp168del	p.D167_D168del	ENST00000296930	NM_002520.6	166	GATGAT/-																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	45	154	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70338696	70338698	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	164	313	0	ENST00000374080.3:c.94_96del	p.Lys32del	p.K32del	ENST00000374080		31	cAGAag/cag																																													NEWRECORD																																		
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	307	345	9	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	99	127	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	147	263	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
XRCC2	7516	MSKCC	GRCh37	7	152345759	152345760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	80	283	0	ENST00000359321.1:c.810dup	p.Ile271TyrfsTer8	p.I271Yfs*8	ENST00000359321	NM_005431.1	270	-/T																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47693836	47693837	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	211	328	0	ENST00000233146.2:c.1552_1553del	p.Gln518ValfsTer10	p.Q518Vfs*10	ENST00000233146	NM_000251.2	517	gCA/g																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	78	319	1	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	110	398	0	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																													NEWRECORD																																		
JAK2	3717	MSKCC	GRCh37	9	5126418	5126418	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000449-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			637	108	241	0	ENST00000381652.3:c.3263T>C	p.Leu1088Ser	p.L1088S	ENST00000381652	NM_004972.3	1088	tTa/tCa																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139404290	139404290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000449-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	396	338	0	ENST00000277541.6:c.2864G>A	p.Arg955His	p.R955H	ENST00000277541	NM_017617.3	955	cGc/cAc																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43596002	43596002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000449-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			867	133	362	0	ENST00000355710.3:c.169C>T	p.Arg57Trp	p.R57W	ENST00000355710	NM_020975.4	57	Cgg/Tgg																																													NEWRECORD																																		
IGF2	3481	MSKCC	GRCh37	11	2156760	2156760	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0000449-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			756	79	376	0	ENST00000434045.2:c.163-1G>T		p.X55_splice	ENST00000434045	NM_001127598.1	55																																														NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56488208	56488208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000449-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			800	62	262	0	ENST00000267101.3:c.1727G>A	p.Cys576Tyr	p.C576Y	ENST00000267101	NM_001982.3	576	tGt/tAt																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29657460	29657460	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000449-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			971	64	347	0	ENST00000358273.4:c.5756A>G	p.Glu1919Gly	p.E1919G	ENST00000358273	NM_001042492.2	1919	gAg/gGg																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45395738	45395738	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000449-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			428	303	352	0	ENST00000262160.6:c.396G>A	p.Trp132Ter	p.W132*	ENST00000262160	NM_005901.5	132	tgG/tgA																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17950437	17950437	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000449-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			565	41	309	0	ENST00000458235.1:c.1290C>G	p.Ile430Met	p.I430M	ENST00000458235	NM_000215.3	430	atC/atG																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0000449-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	178	247	1	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000449-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	180	247	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
NPM1	4869	MSKCC	GRCh37	5	170819743	170819745	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0000449-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			427	83	169	0	ENST00000296930.5:c.384_386delAGA	p.Glu131del	p.E131del	ENST00000296930	NM_002520.6	128	GAA/-																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116423453	116423454	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000449-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			792	173	371	0	ENST00000397752.3:c.3731dupA	p.Leu1245AlafsTer42	p.L1245Afs*42	ENST00000397752	NM_000245.2	1243	gca/gcAa																																													NEWRECORD																																		
NTRK2	4915	MSKCC	GRCh37	9	87339248	87339249	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000449-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			785	133	287	0	ENST00000277120.3:c.832dupT	p.Ser278PhefsTer43	p.S278Ffs*43	ENST00000277120		277	gat/gaTt																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70332272	70332273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000449-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1115	139	516	1	ENST00000373644.4:c.184dupA	p.Thr62AsnfsTer4	p.T62Nfs*4	ENST00000373644	NM_030625.2	59	-/A																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717769	89717770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000449-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			241	100	154	0	ENST00000371953.3:c.800dup	p.Asp268GlyfsTer30	p.D268Gfs*30	ENST00000371953	NM_000314.4	265	cta/ctAa																																													NEWRECORD																																		
H3F3C	440093	MSKCC	GRCh37	12	31944900	31944901	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000449-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	65	118	0	ENST00000340398.3:c.200dupT	p.Gln68ProfsTer14	p.Q68Pfs*14	ENST00000340398	NM_001013699.2	67	ttc/ttTc																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717670	89717671	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	90	565	1	ENST00000371953.3:c.696dup	p.Arg233ThrfsTer10	p.R233Tfs*10	ENST00000371953	NM_000314.4	232	aca/acAa																																													NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0004183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	127	315	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16046918	16046918	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0004183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	216	448	1	ENST00000268712.3:c.1173+2T>C		p.X391_splice	ENST00000268712	NM_006311.3	391																																														NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10610249	10610250	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGA			P-0004183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	179	579	0	ENST00000171111.5:c.458_460dupTCC	p.Leu153dup	p.L153dup	ENST00000171111	NM_203500.1	153	cac/cTCCac																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061224	38061229	+	inframe_deletion	In_Frame_Del	DEL	CTCGAA	CTCGAA	-			P-0004514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	71	326	0	ENST00000250448.2:c.760_765del	p.Phe254_Glu255del	p.F254_E255del	ENST00000250448	NM_004496.3	254	TTCGAG/-																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16259115	16259115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	108	254	0	ENST00000375759.3:c.6380C>T	p.Pro2127Leu	p.P2127L	ENST00000375759	NM_015001.2	2127	cCc/cTc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5239055	5239055	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	57	342	0	ENST00000357368.4:c.1724C>A	p.Pro575Gln	p.P575Q	ENST00000357368	NM_002850.3	575	cCg/cAg																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37667840	37667841	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0004514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	149	378	0	ENST00000447079.4:c.2729_2730dup	p.Glu911ArgfsTer8	p.E911Rfs*8	ENST00000447079	NM_015083.1	909	gga/gGAga																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37618571	37618571	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	101	285	0	ENST00000447079.4:c.248del	p.Phe83SerfsTer9	p.F83Sfs*9	ENST00000447079	NM_015083.1	83	Ttc/tc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0004698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	124	380	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	35	319	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0004698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	135	586	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																													NEWRECORD																																		
XRCC2	7516	MSKCC	GRCh37	7	152345765	152345766	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1074	87	733	0	ENST00000359321.1:c.804_805insG	p.Phe269ValfsTer10	p.F269Vfs*10	ENST00000359321	NM_005431.1	268	-/G																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1091	746	439	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0010166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	434	498	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0010166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	301	510	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																													NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28589367	28589367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1145	306	588	2	ENST00000241453.7:c.2680G>A	p.Val894Ile	p.V894I	ENST00000241453	NM_004119.2	894	Gtt/Att																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48575109	48575109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	332	603	0	ENST00000342988.3:c.303G>T	p.Trp101Cys	p.W101C	ENST00000342988	NM_005359.5	101	tgG/tgT																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63554043	63554047	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTT	CTCTT	-			P-0010166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1138	310	558	0	ENST00000307078.5:c.692_696del	p.Glu231GlyfsTer36	p.E231Gfs*36	ENST00000307078	NM_004655.3	231	gAAGAG/g																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16255475	16255475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002006-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	101	269	0	ENST00000375759.3:c.2740G>A	p.Asp914Asn	p.D914N	ENST00000375759	NM_015001.2	914	Gac/Aac																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67589536	67589536	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0002006-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			461	27	216	0	ENST00000274335.5:c.1300-1G>T		p.X434_splice	ENST00000274335		434																																														NEWRECORD																																		
FGF3	2248	MSKCC	GRCh37	11	69625263	69625263	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002006-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			539	60	339	0	ENST00000334134.2:c.530T>C	p.Leu177Pro	p.L177P	ENST00000334134	NM_005247.2	177	cTg/cCg																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	49050979	49050979	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0002006-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	67	183	0	ENST00000267163.4:c.2663G>C	p.Ser888Thr	p.S888T	ENST00000267163	NM_000321.2	888	aGt/aCt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577599	7577600	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002006-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	112	209	0	ENST00000269305.4:c.681dup	p.Asp228Ter	p.D228*	ENST00000269305	NM_001126112.2	227	-/T																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001693-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			248	25	501	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0001693-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			178	27	503	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001693-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			117	44	258	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																													NEWRECORD																																		
KMT2A	4297	MSKCC	GRCh37	11	118376815	118376815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001693-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			186	24	461	0	ENST00000534358.1:c.10208C>T	p.Pro3403Leu	p.P3403L	ENST00000534358	NM_005933.3	3403	cCg/cTg																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28913322	28913322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001693-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			217	26	609	0	ENST00000282397.4:c.2471G>A	p.Arg824Gln	p.R824Q	ENST00000282397	NM_002019.4	824	cGg/cAg																																													NEWRECORD																																		
CBL	867	MSKCC	GRCh37	11	119156069	119156070	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0001693-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			236	25	557	0	ENST00000264033.4:c.1739dup	p.Val581CysfsTer4	p.V581Cfs*4	ENST00000264033	NM_005188.3	578	-/C																																													NEWRECORD																																		
FUBP1	8880	MSKCC	GRCh37	1	78421016	78421016	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0001693-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			186	29	378	0	ENST00000370768.2:c.1706-2A>C		p.X569_splice	ENST00000370768	NM_003902.3	569																																														NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139405225	139405225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001693-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			167	18	371	0	ENST00000277541.6:c.2620G>A	p.Val874Ile	p.V874I	ENST00000277541	NM_017617.3	874	Gtt/Att																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67477171	67477171	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001693-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			188	17	384	0	ENST00000327367.4:c.978G>A	p.Trp326Ter	p.W326*	ENST00000327367	NM_005902.3	326	tgG/tgA																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	261	388	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0011374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	174	392	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173590	112173590	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	293	374	0	ENST00000257430.4:c.2299C>T	p.Gln767Ter	p.Q767*	ENST00000257430	NM_000038.5	767	Cag/Tag																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128852278	128852278	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	96	288	0	ENST00000249373.3:c.2350G>C	p.Asp784His	p.D784H	ENST00000249373	NM_005631.4	784	Gac/Cac																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	219	429	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	353	428	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																													NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	126	436	0	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110438317	110438322	+	inframe_deletion	In_Frame_Del	DEL	GTTGTT	GTTGTT	-			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	60	95	0	ENST00000375856.3:c.79_84del	p.Asn27_Asn28del	p.N27_N28del	ENST00000375856	NM_003749.2	27	AACAAC/-																																													NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	301	912	6	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42794441	42794441	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	241	596	4	ENST00000575354.2:c.1526delC	p.Pro509HisfsTer14	p.P509Hfs*14	ENST00000575354	NM_015125.3	507	cgC/cg																																													NEWRECORD																																		
TSHR	7253	MSKCC	GRCh37	14	81554355	81554355	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	297	632	0	ENST00000298171.2:c.379del	p.Leu127SerfsTer2	p.L127Sfs*2	ENST00000298171	NM_000369.2	125	ctC/ct																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	115	265	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																														NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32972893	32972893	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	132	350	0	ENST00000380152.3:c.10248del	p.Lys3416AsnfsTer11	p.K3416Nfs*11	ENST00000380152		3415	Aaa/aa																																													NEWRECORD																																		
ERCC3	2071	MSKCC	GRCh37	2	128038196	128038196	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs150954655		P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	249	504	1	ENST00000285398.2:c.1354C>T	p.Arg452Ter	p.R452*	ENST00000285398	NM_000122.1	452	Cga/Tga																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47164832	47164832	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1017636782		P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	197	423	0	ENST00000409792.3:c.1294C>T	p.Arg432Cys	p.R432C	ENST00000409792	NM_014159.6	432	Cgt/Tgt																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120458332	120458332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	142	432	0	ENST00000256646.2:c.7013C>T	p.Thr2338Ile	p.T2338I	ENST00000256646	NM_024408.3	2338	aCc/aTc																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120468283	120468283	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs74522665		P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	124	347	0	ENST00000256646.2:c.4156G>A	p.Gly1386Arg	p.G1386R	ENST00000256646	NM_024408.3	1386	Ggg/Agg																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66361249	66361249	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	156	381	1	ENST00000273854.3:c.923G>T	p.Gly308Val	p.G308V	ENST00000273854	NM_004439.5	308	gGg/gTg																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66535351	66535351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	228	531	2	ENST00000273854.3:c.110G>A	p.Arg37Gln	p.R37Q	ENST00000273854	NM_004439.5	37	cGg/cAg																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117678044	117678044	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	180	484	0	ENST00000368508.3:c.3889T>G	p.Tyr1297Asp	p.Y1297D	ENST00000368508	NM_002944.2	1297	Tac/Gac																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145736909	145736909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	189	493	0	ENST00000428558.2:c.3532G>A	p.Gly1178Arg	p.G1178R	ENST00000428558	NM_004260.3	1178	Ggg/Agg																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21970987	21970987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	243	373	0	ENST00000304494.5:c.371G>A	p.Arg124His	p.R124H	ENST00000304494	NM_000077.4	124	cGc/cAc																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133760255	133760255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	170	439	0	ENST00000318560.5:c.2578G>T	p.Gly860Cys	p.G860C	ENST00000318560	NM_005157.4	860	Ggt/Tgt																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49426084	49426084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	150	466	1	ENST00000301067.7:c.12404C>T	p.Ala4135Val	p.A4135V	ENST00000301067	NM_003482.3	4135	gCt/gTt																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57864196	57864196	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs972690369		P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	255	612	3	ENST00000228682.2:c.1673G>A	p.Arg558His	p.R558H	ENST00000228682	NM_005269.2	558	cGc/cAc																																													NEWRECORD																																		
SH2B3	10019	MSKCC	GRCh37	12	111856335	111856335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	105	98	1	ENST00000341259.2:c.386C>T	p.Pro129Leu	p.P129L	ENST00000341259	NM_005475.2	129	cCg/cTg																																													NEWRECORD																																		
LATS2	26524	MSKCC	GRCh37	13	21563426	21563426	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	280	594	1	ENST00000382592.4:c.493A>G	p.Thr165Ala	p.T165A	ENST00000382592	NM_014572.2	165	Acc/Gcc																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007686	45007686	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	215	470	0	ENST00000558401.1:c.133T>C	p.Cys45Arg	p.C45R	ENST00000558401	NM_004048.2	45	Tgc/Cgc																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99478142	99478142	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	343	629	0	ENST00000268035.6:c.3046G>T	p.Gly1016Ter	p.G1016*	ENST00000268035	NM_000875.3	1016	Gga/Tga																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72829091	72829091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	331	714	0	ENST00000268489.5:c.7490C>T	p.Ser2497Leu	p.S2497L	ENST00000268489	NM_006885.3	2497	tCg/tTg																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72991721	72991721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	192	302	0	ENST00000268489.5:c.2324C>T	p.Ala775Val	p.A775V	ENST00000268489	NM_006885.3	775	gCg/gTg																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81891937	81891937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	368	784	1	ENST00000359376.3:c.407C>T	p.Ala136Val	p.A136V	ENST00000359376	NM_002661.3	136	gCg/gTg																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15302921	15302921	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	131	461	0	ENST00000263388.2:c.529A>G	p.Thr177Ala	p.T177A	ENST00000263388	NM_000435.2	177	Aca/Gca																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15349684	15349684	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	73	186	0	ENST00000263377.2:c.3890A>C	p.Gln1297Pro	p.Q1297P	ENST00000263377	NM_058243.2	1297	cAg/cCg																																													NEWRECORD																																		
CEBPA	1050	MSKCC	GRCh37	19	33792885	33792885	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	47	129	0	ENST00000498907.2:c.436del	p.Leu146CysfsTer14	p.L146Cfs*14	ENST00000498907	NM_004364.3	146	Ctg/tg																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63532654	63532654	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	124	301	0	ENST00000307078.5:c.1925del	p.Lys642ArgfsTer47	p.K642Rfs*47	ENST00000307078	NM_004655.3	642	aAg/ag																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49424113	49424114	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	247	591	3	ENST00000301067.7:c.13948dup	p.Glu4650GlyfsTer12	p.E4650Gfs*12	ENST00000301067	NM_003482.3	4650	gag/gGag																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187542110	187542110	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	181	432	0	ENST00000441802.2:c.5630del	p.Pro1877LeufsTer20	p.P1877Lfs*20	ENST00000441802	NM_005245.3	1877	cCt/ct																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411530	63411530	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	296	389	0	ENST00000330258.3:c.1637del	p.Leu546CysfsTer16	p.L546Cfs*16	ENST00000330258	NM_152424.3	546	tTg/tg																																													NEWRECORD																																		
PARP1	142	MSKCC	GRCh37	1	226567646	226567647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1159330096		P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	122	376	0	ENST00000366794.5:c.1519dup	p.Ser507LysfsTer14	p.S507Kfs*14	ENST00000366794	NM_001618.3	507	agc/aAgc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579345	7579346	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	290	556	0	ENST00000269305.4:c.341dup	p.Leu114PhefsTer35	p.L114Ffs*35	ENST00000269305	NM_001126112.2	114	ttg/ttTg																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110438020	110438020	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	114	265	0	ENST00000375856.3:c.381G>C	p.Glu127Asp	p.E127D	ENST00000375856	NM_003749.2	127	gaG/gaC																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	191	621	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577077	7577077	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs748891343		P-0014721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	164	590	0	ENST00000269305.4:c.861G>C	p.Glu287Asp	p.E287D	ENST00000269305	NM_001126112.2	287	gaG/gaC																																													NEWRECORD																																		
FH	2271	MSKCC	GRCh37	1	241682989	241682989	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199912971		P-0014721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	61	365	0	ENST00000366560.3:c.34C>T	p.Arg12Cys	p.R12C	ENST00000366560	NM_000143.3	12	Cgt/Tgt																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18524113	18524113	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0014721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	25	226	0	ENST00000266497.5:c.1626-1G>T		p.X542_splice	ENST00000266497		542																																														NEWRECORD																																		
RECQL	5965	MSKCC	GRCh37	12	21643312	21643312	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0014721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	43	364	0	ENST00000421138.2:c.215A>T	p.Asp72Val	p.D72V	ENST00000421138		72	gAt/gTt																																													NEWRECORD																																		
TSHR	7253	MSKCC	GRCh37	14	81610414	81610414	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	68	349	0	ENST00000298171.2:c.2012C>A	p.Ser671Tyr	p.S671Y	ENST00000298171	NM_000369.2	671	tCc/tAc																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29559093	29559094	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	19	109	0	ENST00000358273.4:c.3203dup	p.Leu1068PhefsTer21	p.L1068Ffs*21	ENST00000358273	NM_001042492.2	1067	gat/gaTt																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10610454	10610454	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	134	525	0	ENST00000171111.5:c.256C>T	p.Gln86Ter	p.Q86*	ENST00000171111	NM_203500.1	86	Cag/Tag																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198273278	198273278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	54	449	0	ENST00000335508.6:c.932C>T	p.Ala311Val	p.A311V	ENST00000335508	NM_012433.2	311	gCt/gTt																																													NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50444484	50444484	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	144	243	0	ENST00000331340.3:c.414C>A	p.Ser138Arg	p.S138R	ENST00000331340	NM_006060.4	138	agC/agA																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106509612	106509612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	48	483	0	ENST00000359195.3:c.1606C>T	p.Pro536Ser	p.P536S	ENST00000359195	NM_002649.2	536	Cct/Tct																																													NEWRECORD																																		
PREX2	80243	MSKCC	GRCh37	8	68950518	68950518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	65	238	0	ENST00000288368.4:c.830G>A	p.Arg277Lys	p.R277K	ENST00000288368	NM_024870.2	277	aGa/aAa																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145739054	145739054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	230	505	1	ENST00000428558.2:c.2101G>A	p.Asp701Asn	p.D701N	ENST00000428558	NM_004260.3	701	Gat/Aat																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8524967	8524967	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	127	299	1	ENST00000356435.5:c.637G>T	p.Ala213Ser	p.A213S	ENST00000356435		213	Gcg/Tcg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	42	152	2	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	122	425	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	39074472	39074472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	20	387	0	ENST00000357387.3:c.8C>T	p.Ala3Val	p.A3V	ENST00000357387	NM_152756.3	3	gCg/gTg																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63760059	63760059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	33	235	0	ENST00000279873.7:c.712G>A	p.Glu238Lys	p.E238K	ENST00000279873	NM_032199.2	238	Gag/Aag																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41246431	41246431	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	46	423	0	ENST00000357654.3:c.1117A>T	p.Ile373Leu	p.I373L	ENST00000357654	NM_007294.3	373	Ata/Tta																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3819237	3819237	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	535	973	0	ENST00000262367.5:c.2998G>T	p.Glu1000Ter	p.E1000*	ENST00000262367	NM_004380.2	1000	Gag/Tag																																													NEWRECORD																																		
ICOSLG	23308	MSKCC	GRCh37	21	45657097	45657097	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	22	348	0	ENST00000407780.3:c.59del	p.Thr20IlefsTer10	p.T20Ifs*10	ENST00000407780	NM_001283052.1	20	aCt/at																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7576866	7576867	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	241	822	1	ENST00000269305.4:c.979dup	p.Tyr327LeufsTer10	p.Y327Lfs*10	ENST00000269305	NM_001126112.2	327	tat/tTat																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0012078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	90	924	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0012078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	74	1413	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162745530	162745530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	69	1260	2	ENST00000367921.3:c.1945C>T	p.Pro649Ser	p.P649S	ENST00000367921	NM_006182.2	649	Cct/Tct																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39930320	39930321	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	79	1516	0	ENST00000378444.4:c.3143dup	p.Ala1049SerfsTer30	p.A1049Sfs*30	ENST00000378444	NM_001123385.1	1048	cca/ccCa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0012747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	477	341	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0012747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	291	185	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	287	312	0	ENST00000269305.4:c.400T>C	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	Ttt/Ctt																																													NEWRECORD																																		
MYCN	4613	MSKCC	GRCh37	2	16082397	16082397	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	420	306	0	ENST00000281043.3:c.211A>T	p.Ser71Cys	p.S71C	ENST00000281043	NM_005378.4	71	Agc/Tgc																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128845473	128845473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	640	442	0	ENST00000249373.3:c.770G>A	p.Arg257Gln	p.R257Q	ENST00000249373	NM_005631.4	257	cGg/cAg																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44938414	44938414	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	266	513	0	ENST00000377967.4:c.2962A>C	p.Thr988Pro	p.T988P	ENST00000377967	NM_021140.2	988	Act/Cct																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266038	41266264	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCAT	TGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCAT	-			P-0012747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			38	87	344	0	ENST00000349496.5:c.37_241+22del		p.X13_splice	ENST00000349496	NM_001904.3	13																																														NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	150023196	150023196	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	266	430	0	ENST00000253339.5:c.67del	p.Tyr23IlefsTer32	p.Y23Ifs*32	ENST00000253339		23	Tat/at																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	41	738	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89813280	89813280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	21	885	2	ENST00000389301.3:c.3367G>A	p.Gly1123Arg	p.G1123R	ENST00000389301	NM_000135.2	1123	Gga/Aga																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32954049	32954049	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	11	739	1	ENST00000380152.3:c.9116C>T	p.Pro3039Leu	p.P3039L	ENST00000380152		3039	cCg/cTg																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56440720	56440721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	17	969	0	ENST00000407977.2:c.497dup	p.Asn167Ter	p.N167*	ENST00000407977		166	ggt/ggGt																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48573573	48573573	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	22	643	1	ENST00000342988.3:c.157G>T	p.Glu53Ter	p.E53*	ENST00000342988	NM_005359.5	53	Gaa/Taa																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10599902	10599902	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	10	1076	0	ENST00000171111.5:c.1674del	p.Ile559SerfsTer36	p.I559Sfs*36	ENST00000171111	NM_203500.1	558	ggG/gg																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1268701	1268701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	12	806	1	ENST00000310581.5:c.2516C>T	p.Thr839Met	p.T839M	ENST00000310581	NM_198253.2	839	aCg/aTg																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86685275	86685276	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTGCATGAGAT			P-0013571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	15	530	0	ENST00000274376.6:c.2996_3006dup	p.Val1003MetfsTer25	p.V1003Mfs*25	ENST00000274376	NM_002890.2	997	-/TTGCATGAGAT																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57864466	57864466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	68	618	2	ENST00000228682.2:c.1943G>A	p.Arg648His	p.R648H	ENST00000228682	NM_005269.2	648	cGt/cAt																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249016	55249017	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCCACG			P-0014223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	135	523	0	ENST00000275493.2:c.2315_2320dup	p.His773_Val774insAlaHis	p.H773_V774insAH	ENST00000275493	NM_005228.3	772	ccc/cCCCACGcc																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153259089	153259089	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0014223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	14	198	0	ENST00000281708.4:c.727-1G>C		p.X243_splice	ENST00000281708	NM_033632.3	243																																														NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5231539	5231539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	129	356	0	ENST00000357368.4:c.1937C>T	p.Thr646Met	p.T646M	ENST00000357368	NM_002850.3	646	aCg/aTg																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56170948	56170949	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	91	176	0	ENST00000399503.3:c.1780dupG	p.Ala594GlyfsTer52	p.A594Gfs*52	ENST00000399503	NM_005921.1	592	-/G																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115719	8115720	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			640	201	371	0	ENST00000346208.3:c.1066dupA	p.Met356AsnfsTer15	p.M356Nfs*15	ENST00000346208		355	-/A																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0003569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	96	334	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64571839	64571840	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	48	770	0	ENST00000337652.1:c.1814dupT	p.Ser606ValfsTer78	p.S606Vfs*78	ENST00000337652	NM_130803.2	605	ctg/ctTg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	67	305	0	ENST00000269305.4:c.434T>G	p.Leu145Arg	p.L145R	ENST00000269305	NM_001126112.2	145	cTg/cGg																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153251972	153251972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	90	403	0	ENST00000281708.4:c.1034G>A	p.Gly345Asp	p.G345D	ENST00000281708	NM_033632.3	345	gGt/gAt																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0005464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	94	468	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0005464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	295	599	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	398	572	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153245473	153245473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	102	442	0	ENST00000281708.4:c.1718G>A	p.Cys573Tyr	p.C573Y	ENST00000281708	NM_033632.3	573	tGc/tAc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174588	112174589	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	229	530	0	ENST00000257430.4:c.3297_3298insG	p.Ser1100ValfsTer19	p.S1100Vfs*19	ENST00000257430	NM_000038.5	1099	-/G																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36252969	36252977	+	inframe_deletion	In_Frame_Del	DEL	AGTGACCAG	AGTGACCAG	-			P-0005464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	223	369	0	ENST00000300305.3:c.385_393del	p.Leu129_Thr131del	p.L129_T131del	ENST00000300305		129	CTGGTCACT/-																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59761459	59761460	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	59	305	0	ENST00000259008.2:c.2947dup	p.Ile983AsnfsTer19	p.I983Nfs*19	ENST00000259008	NM_032043.2	983	att/aAtt																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162722894	162722894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000242-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	89	256	0	ENST00000367921.3:c.92G>T	p.Arg31Leu	p.R31L	ENST00000367921	NM_006182.2	31	cGc/cTc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520006		P-0000242-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			486	92	466	0	ENST00000269305.4:c.821T>G	p.Val274Gly	p.V274G	ENST00000269305	NM_001126112.2	274	gTt/gGt																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36252962	36252962	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000242-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	43	150	0	ENST00000300305.3:c.400G>C	p.Ala134Pro	p.A134P	ENST00000300305		134	Gct/Cct																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151860461	151860462	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000242-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			602	99	363	0	ENST00000262189.6:c.10200dupT	p.Lys3401Ter	p.K3401*	ENST00000262189	NM_170606.2	3400	-/T																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11188064	11188064	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	56	250	0	ENST00000361445.4:c.6030G>C	p.Met2010Ile	p.M2010I	ENST00000361445	NM_004958.3	2010	atG/atC																																													NEWRECORD																																		
CCND1	595	MSKCC	GRCh37	11	69456209	69456209	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	57	548	0	ENST00000227507.2:c.128C>G	p.Ser43Cys	p.S43C	ENST00000227507	NM_053056.2	43	tCc/tGc																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56491645	56491645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	247	486	2	ENST00000267101.3:c.2537G>T	p.Ser846Ile	p.S846I	ENST00000267101	NM_001982.3	846	aGt/aTt																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	269	489	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3778247	3778247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	69	464	0	ENST00000262367.5:c.6801G>T	p.Gln2267His	p.Q2267H	ENST00000262367	NM_004380.2	2267	caG/caT																																													NEWRECORD																																		
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0014488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	51	331	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645885	67645886	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGTTACACGTGTCCACGGCGTTCAAATTTGGATCGTCACATGAAA			P-0014488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	100	487	0	ENST00000264010.4:c.816_860dup	p.Tyr273_Ser287dup	p.Y273_S287dup	ENST00000264010	NM_006565.3	273	-/AGTTACACGTGTCCACGGCGTTCAAATTTGGATCGTCACATGAAA																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68853221	68853221	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	241	481	0	ENST00000261769.5:c.1605del	p.Asn536IlefsTer21	p.N536Ifs*21	ENST00000261769	NM_004360.3	535	aTt/at																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0014488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	85	538	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	108	317	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																													NEWRECORD																																		
PTPN11	5781	MSKCC	GRCh37	12	112888198	112888198	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121918453		P-0004975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	91	416	0	ENST00000351677.2:c.214G>A	p.Ala72Thr	p.A72T	ENST00000351677	NM_002834.3	72	Gcc/Acc																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	76	285	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0009907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	125	595	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																													NEWRECORD																																		
PMS1	5378	MSKCC	GRCh37	2	190728678	190728678	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	135	827	0	ENST00000441310.2:c.2066G>C	p.Arg689Thr	p.R689T	ENST00000441310	NM_000534.4	689	aGa/aCa																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56178257	56178257	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	151	745	0	ENST00000399503.3:c.3230C>G	p.Ser1077Ter	p.S1077*	ENST00000399503	NM_005921.1	1077	tCa/tGa																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176637183	176637183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	82	503	0	ENST00000439151.2:c.1783G>A	p.Glu595Lys	p.E595K	ENST00000439151	NM_022455.4	595	Gag/Aag																																													NEWRECORD																																		
DAXX	1616	MSKCC	GRCh37	6	33289660	33289660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	128	426	0	ENST00000374542.5:c.43G>A	p.Glu15Lys	p.E15K	ENST00000374542	NM_001141970.1	15	Gaa/Aaa																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46244318	46244318	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	107	499	0	ENST00000334344.6:c.2412A>C	p.Arg804Ser	p.R804S	ENST00000334344	NM_152641.2	804	agA/agC																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061312	38061312	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	179	744	0	ENST00000250448.2:c.677A>G	p.Asp226Gly	p.D226G	ENST00000250448	NM_004496.3	226	gAc/gGc																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41818321	41818321	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			21	14	30	0	ENST00000373198.4:c.53C>A	p.Pro18Gln	p.P18Q	ENST00000373198	NM_133170.3	18	cCg/cAg																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46244322	46244331	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAACATAC	CAGAACATAC	-			P-0009907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	101	508	0	ENST00000334344.6:c.2419_2428del	p.Asn807HisfsTer12	p.N807Hfs*12	ENST00000334344	NM_152641.2	806	CAGAACATACca/ca																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68849654	68849655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	103	518	0	ENST00000261769.5:c.1561dup	p.Ile521AsnfsTer16	p.I521Nfs*16	ENST00000261769	NM_004360.3	519	-/A																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115982	8115983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	14	176	0	ENST00000346208.3:c.1330dupT	p.Ter444LeufsTer63	p.*444Lfs*63	ENST00000346208		443	ggt/ggTt																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0003756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	130	362	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	319	372	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0003756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	43	153	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0003756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	138	271	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	76	165	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	97	485	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023007	27023008	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGC			P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			38	10	16	0	ENST00000324856.7:c.126_128dup	p.Ala45dup	p.A45dup	ENST00000324856	NM_006015.4	45	gag/gaGGCg																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65309827	65309827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	130	642	0	ENST00000342505.4:c.2323G>A	p.Asp775Asn	p.D775N	ENST00000342505	NM_002227.2	775	Gac/Aac																																													NEWRECORD																																		
EPCAM	4072	MSKCC	GRCh37	2	47606132	47606132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	40	511	0	ENST00000263735.4:c.596C>A	p.Ser199Tyr	p.S199Y	ENST00000263735	NM_002354.2	199	tCt/tAt																																													NEWRECORD																																		
IRF4	3662	MSKCC	GRCh37	6	401578	401578	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1050972		P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	95	498	0	ENST00000380956.4:c.900G>C	p.Gln300His	p.Q300H	ENST00000380956	NM_001195286.1	300	caG/caC																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63661479	63661479	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	62	539	0	ENST00000279873.7:c.11A>G	p.Asn4Ser	p.N4S	ENST00000279873	NM_032199.2	4	aAc/aGc																																													NEWRECORD																																		
CDK4	1019	MSKCC	GRCh37	12	58145094	58145094	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	82	533	0	ENST00000257904.6:c.250G>C	p.Asp84His	p.D84H	ENST00000257904	NM_000075.3	84	Gac/Cac																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115109915	115109915	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	40	235	0	ENST00000257566.3:c.1963C>G	p.Leu655Val	p.L655V	ENST00000257566	NM_016569.3	655	Ctg/Gtg																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72829549	72829549	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1246	126	960	0	ENST00000268489.5:c.7032C>G	p.Ile2344Met	p.I2344M	ENST00000268489	NM_006885.3	2344	atC/atG																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89348135	89348135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1372	124	1057	1	ENST00000301030.4:c.4815G>T	p.Met1605Ile	p.M1605I	ENST00000301030	NM_001256183.1	1605	atG/atT																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89348849	89348849	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1567	187	1084	0	ENST00000301030.4:c.4101G>C	p.Lys1367Asn	p.K1367N	ENST00000301030	NM_001256183.1	1367	aaG/aaC																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7143015	7143015	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145643501		P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	58	442	0	ENST00000302850.5:c.2354C>T	p.Ser785Leu	p.S785L	ENST00000302850	NM_000208.2	785	tCg/tTg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577512	7577512	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	134	568	0	ENST00000269305.4:c.769del	p.Leu257TrpfsTer88	p.L257Wfs*88	ENST00000269305	NM_001126112.2	257	Ctg/tg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0009467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	304	392	1	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																														NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185181440	185181440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	108	396	0	ENST00000265026.3:c.1381G>C	p.Glu461Gln	p.E461Q	ENST00000265026	NM_004721.4	461	Gag/Cag																																													NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0009467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	705	421	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212295789	212295789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	111	416	1	ENST00000342788.4:c.2524C>T	p.Arg842Trp	p.R842W	ENST00000342788	NM_005235.2	842	Cgg/Tgg																																													NEWRECORD																																		
MYCN	4613	MSKCC	GRCh37	2	16082203	16082203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	393	422	0	ENST00000281043.3:c.17C>T	p.Thr6Met	p.T6M	ENST00000281043	NM_005378.4	6	aCg/aTg																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29497982	29497982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	292	513	1	ENST00000389048.3:c.2024C>T	p.Pro675Leu	p.P675L	ENST00000389048	NM_004304.4	675	cCc/cTc																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49415594	49415594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	289	392	0	ENST00000301067.7:c.16583G>T	p.Gly5528Val	p.G5528V	ENST00000301067	NM_003482.3	5528	gGa/gTa																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49444220	49444220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	433	493	0	ENST00000301067.7:c.3151G>T	p.Val1051Phe	p.V1051F	ENST00000301067	NM_003482.3	1051	Gtt/Ttt																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49444812	49444812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	330	348	0	ENST00000301067.7:c.2654C>T	p.Pro885Leu	p.P885L	ENST00000301067	NM_003482.3	885	cCc/cTc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5240319	5240319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	400	398	0	ENST00000357368.4:c.1595G>A	p.Arg532Gln	p.R532Q	ENST00000357368	NM_002850.3	532	cGg/cAg																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11170520	11170520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	190	282	0	ENST00000344626.4:c.4727A>T	p.Glu1576Val	p.E1576V	ENST00000344626	NM_003072.3	1576	gAg/gTg																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81399272	81399273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	233	315	0	ENST00000222390.5:c.15dup	p.Leu6ThrfsTer36	p.L6Tfs*36	ENST00000222390	NM_000601.4	5	-/A																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	426	349	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	460	197	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	30	223	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398220	25398220	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1255	145	389	1	ENST00000256078.4:c.99T>A	p.Asp33Glu	p.D33E	ENST00000256078	NM_033360.2	33	gaT/gaA																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114920402	114920402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1453	220	601	0	ENST00000543371.1:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000543371	NM_001198531.1	448	cGg/cAg																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114912149	114912149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1354	350	695	0	ENST00000543371.1:c.1219C>T	p.Arg407Ter	p.R407*	ENST00000543371	NM_001198531.1	407	Cga/Tga																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135771987	135771988	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs118203743		P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	55	179	0	ENST00000298552.3:c.3127_3129dup	p.Ser1043dup	p.S1043dup	ENST00000298552	NM_001162426.1	1043	-/AGC																																													NEWRECORD																																		
NKX3-1	4824	MSKCC	GRCh37	8	23540198	23540198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	78	134	0	ENST00000380871.4:c.205G>A	p.Ala69Thr	p.A69T	ENST00000380871	NM_006167.3	69	Gcc/Acc																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119111	70119111	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	74	156	0	ENST00000245479.2:c.683C>A	p.Ser228Ter	p.S228*	ENST00000245479	NM_000346.3	228	tCg/tAg																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17954247	17954247	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143586866		P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1213	169	503	1	ENST00000458235.1:c.362G>A	p.Arg121His	p.R121H	ENST00000458235	NM_000215.3	121	cGc/cAc																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48584779	48584788	+	frameshift_variant	Frame_Shift_Del	DEL	GCCATCTTCA	GCCATCTTCA	-			P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	152	557	0	ENST00000342988.3:c.859_868del	p.His287ThrfsTer46	p.H287Tfs*46	ENST00000342988	NM_005359.5	286	gGCCATCTTCAg/gg																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604766	48604766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	243	455	1	ENST00000342988.3:c.1588del	p.His530ThrfsTer7	p.H530Tfs*7	ENST00000342988	NM_005359.5	530	Cac/ac																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70120346	70120347	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCTC			P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1654	400	772	0	ENST00000245479.2:c.1351_1352insCCCT	p.Tyr451SerfsTer128	p.Y451Sfs*128	ENST00000245479	NM_000346.3	450	tcc/tCCTCcc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	103	250	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	368	293	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0006711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	60	306	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118343789	118343789	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	84	382	0	ENST00000534358.1:c.1915A>G	p.Lys639Glu	p.K639E	ENST00000534358	NM_005933.3	639	Aaa/Gaa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151244	112151245	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0006711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	107	436	0	ENST00000257430.4:c.893_894dup	p.Ser299ThrfsTer7	p.S299Tfs*7	ENST00000257430	NM_000038.5	296	agc/agCAc																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	97	265	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	10	289	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1154	408	526	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	152	183	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70120232	70120232	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1182	389	551	2	ENST00000245479.2:c.1234C>T	p.Gln412Ter	p.Q412*	ENST00000245479	NM_000346.3	412	Cag/Tag																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	145	372	2	ENST00000257430.4:c.4393_4394dupAG	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	78	150	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	300	359	1	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	110	305	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	201	519	3	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	287	396	0	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913294		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	18	314	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1202	417	492	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1742	306	656	1	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	132	158	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48881489	48881490	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	114	365	0	ENST00000267163.4:c.219_220del	p.Arg73SerfsTer36	p.R73Sfs*36	ENST00000267163	NM_000321.2	71	AGa/a																																													NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2004	638	975	8	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	434	399	10	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	231	417	7	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	171	349	2	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta																																													NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	194	481	8	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																													NEWRECORD																																		
HRAS	3265	MSKCC	GRCh37	11	534286	534286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	267	376	0	ENST00000311189.7:c.37G>A	p.Gly13Ser	p.G13S	ENST00000311189		13	Ggt/Agt																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11097625	11097625	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1338	503	608	0	ENST00000344626.4:c.810delC	p.Met272CysfsTer31	p.M272Cfs*31	ENST00000344626	NM_003072.3	269	Ccc/cc																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131953826	131953826	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	152	394	1	ENST00000265335.6:c.3229C>T	p.Arg1077Ter	p.R1077*	ENST00000265335		1077	Cga/Tga																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15271747	15271747	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	263	392	0	ENST00000263388.2:c.6692del	p.Pro2231GlnfsTer15	p.P2231Qfs*15	ENST00000263388	NM_000435.2	2231	cCa/ca																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89653860	89653860	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	89	232	0	ENST00000371953.3:c.158T>C	p.Val53Ala	p.V53A	ENST00000371953	NM_000314.4	53	gTa/gCa																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11175476	11175476	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	111	370	0	ENST00000361445.4:c.7066A>G	p.Ile2356Val	p.I2356V	ENST00000361445	NM_004958.3	2356	Att/Gtt																																													NEWRECORD																																		
CDKN2C	1031	MSKCC	GRCh37	1	51436077	51436077	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	147	181	0	ENST00000262662.1:c.37G>T	p.Ala13Ser	p.A13S	ENST00000262662		13	Gct/Tct																																													NEWRECORD																																		
CXCR4	7852	MSKCC	GRCh37	2	136873229	136873229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1431	473	760	1	ENST00000241393.3:c.269C>T	p.Thr90Met	p.T90M	ENST00000241393	NM_003467.2	90	aCg/aTg																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212251859	212251859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	108	167	0	ENST00000342788.4:c.3200G>T	p.Arg1067Leu	p.R1067L	ENST00000342788	NM_005235.2	1067	cGa/cTa																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89498391	89498391	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	97	293	0	ENST00000336596.2:c.2363T>A	p.Ile788Asn	p.I788N	ENST00000336596	NM_005233.5	788	aTc/aAc																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138478143	138478143	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	88	348	0	ENST00000289153.2:c.43C>A	p.Leu15Ile	p.L15I	ENST00000289153	NM_006219.2	15	Ctt/Att																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178921383	178921383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	158	439	0	ENST00000263967.3:c.865G>A	p.Ala289Thr	p.A289T	ENST00000263967	NM_006218.2	289	Gct/Act																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66467370	66467370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	121	203	0	ENST00000273854.3:c.899G>A	p.Gly300Asp	p.G300D	ENST00000273854	NM_004439.5	300	gGc/gAc																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153245447	153245447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	109	315	1	ENST00000281708.4:c.1744T>C	p.Ser582Pro	p.S582P	ENST00000281708	NM_033632.3	582	Tcg/Ccg																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30673725	30673725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs78556678		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1150	284	355	1	ENST00000376406.3:c.3235C>T	p.Arg1079Cys	p.R1079C	ENST00000376406	NM_014641.2	1079	Cgt/Tgt																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2954975	2954975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	358	421	0	ENST00000396946.4:c.2735G>A	p.Arg912Gln	p.R912Q	ENST00000396946	NM_032415.4	912	cGg/cAg																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140549958	140549958	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	184	485	0	ENST00000288602.6:c.193T>A	p.Leu65Met	p.L65M	ENST00000288602	NM_004333.4	65	Ttg/Atg																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151878230	151878230	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	146	231	0	ENST00000262189.6:c.6715A>G	p.Thr2239Ala	p.T2239A	ENST00000262189	NM_170606.2	2239	Aca/Gca																																													NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90965495	90965495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	137	358	0	ENST00000265433.3:c.1822G>A	p.Val608Ile	p.V608I	ENST00000265433	NM_002485.4	608	Gta/Ata																																													NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90965761	90965761	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	113	334	0	ENST00000265433.3:c.1556A>G	p.Asp519Gly	p.D519G	ENST00000265433	NM_002485.4	519	gAc/gGc																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145741485	145741485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	320	504	0	ENST00000428558.2:c.1018C>T	p.His340Tyr	p.H340Y	ENST00000428558	NM_004260.3	340	Cac/Tac																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139413912	139413912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	322	424	0	ENST00000277541.6:c.848G>A	p.Cys283Tyr	p.C283Y	ENST00000277541	NM_017617.3	283	tGc/tAc																																													NEWRECORD																																		
YAP1	10413	MSKCC	GRCh37	11	102056774	102056774	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	108	370	0	ENST00000282441.5:c.714A>C	p.Gln238His	p.Q238H	ENST00000282441	NM_001130145.2	238	caA/caC																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115120888	115120888	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	106	279	0	ENST00000257566.3:c.118T>C	p.Phe40Leu	p.F40L	ENST00000257566	NM_016569.3	40	Ttc/Ctc																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32937398	32937398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	127	331	0	ENST00000380152.3:c.8059G>T	p.Val2687Phe	p.V2687F	ENST00000380152		2687	Gtt/Ttt																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103527717	103527717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	153	398	0	ENST00000355739.4:c.3025C>T	p.Arg1009Cys	p.R1009C	ENST00000355739	NM_000123.3	1009	Cgt/Tgt																																													NEWRECORD																																		
TSHR	7253	MSKCC	GRCh37	14	81610516	81610516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	216	382	0	ENST00000298171.2:c.2114C>A	p.Ala705Glu	p.A705E	ENST00000298171	NM_000369.2	705	gCa/gAa																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95572555	95572555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	87	193	0	ENST00000343455.3:c.2810G>A	p.Arg937His	p.R937H	ENST00000343455	NM_177438.2	937	cGc/cAc																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	41991141	41991141	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	192	461	0	ENST00000219905.7:c.2092+2T>C		p.X698_splice	ENST00000219905	NM_001164273.1	698																																														NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003767	45003767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	241	348	0	ENST00000558401.1:c.23C>A	p.Ala8Asp	p.A8D	ENST00000558401	NM_004048.2	8	gCt/gAt																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88576184	88576184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	214	263	0	ENST00000360948.2:c.1489G>A	p.Gly497Arg	p.G497R	ENST00000360948	NM_001012338.2	497	Ggg/Agg																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88690595	88690595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	171	303	1	ENST00000360948.2:c.435G>T	p.Gln145His	p.Q145H	ENST00000360948	NM_001012338.2	145	caG/caT																																													NEWRECORD																																		
IDH2	3418	MSKCC	GRCh37	15	90627503	90627503	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	207	279	1	ENST00000330062.3:c.1354C>T	p.Gln452Ter	p.Q452*	ENST00000330062	NM_002168.2	452	Cag/Tag																																													NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2136233	2136233	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	204	295	0	ENST00000219476.3:c.4702T>C	p.Ser1568Pro	p.S1568P	ENST00000219476	NM_000548.3	1568	Tcc/Ccc																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67663356	67663356	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	337	483	0	ENST00000264010.4:c.1757A>G	p.Glu586Gly	p.E586G	ENST00000264010	NM_006565.3	586	gAa/gGa																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72991706	72991706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	385	318	1	ENST00000268489.5:c.2339C>T	p.Ala780Val	p.A780V	ENST00000268489	NM_006885.3	780	gCg/gTg																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72993545	72993545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1557	513	768	0	ENST00000268489.5:c.500C>T	p.Pro167Leu	p.P167L	ENST00000268489	NM_006885.3	167	cCc/cTc																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29654856	29654856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	113	205	0	ENST00000358273.4:c.5608C>T	p.Arg1870Trp	p.R1870W	ENST00000358273	NM_001042492.2	1870	Cgg/Tgg																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37618910	37618910	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	329	458	0	ENST00000447079.4:c.586G>T	p.Asp196Tyr	p.D196Y	ENST00000447079	NM_015083.1	196	Gac/Tac																																													NEWRECORD																																		
SPOP	8405	MSKCC	GRCh37	17	47684670	47684670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	167	402	0	ENST00000347630.2:c.779C>T	p.Thr260Met	p.T260M	ENST00000347630	NM_001007230.1	260	aCg/aTg																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63532567	63532567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	261	302	0	ENST00000307078.5:c.2012G>A	p.Arg671His	p.R671H	ENST00000307078	NM_004655.3	671	cGc/cAc																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48593398	48593398	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	101	264	0	ENST00000342988.3:c.1149A>G	p.Ile383Met	p.I383M	ENST00000342988	NM_005359.5	383	atA/atG																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2164203	2164203	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	258	399	0	ENST00000398665.3:c.20T>G	p.Leu7Arg	p.L7R	ENST00000398665	NM_032482.2	7	cTg/cGg																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7163169	7163169	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	326	415	0	ENST00000302850.5:c.1903T>C	p.Ser635Pro	p.S635P	ENST00000302850	NM_000208.2	635	Tca/Cca																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50919007	50919007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1201	503	545	3	ENST00000440232.2:c.2744C>T	p.Ala915Val	p.A915V	ENST00000440232	NM_002691.3	915	gCg/gTg																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31023460	31023460	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	135	223	0	ENST00000375687.4:c.2945A>G	p.Lys982Arg	p.K982R	ENST00000375687	NM_015338.5	982	aAg/aGg																																													NEWRECORD																																		
MAPK1	5594	MSKCC	GRCh37	22	22123582	22123582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			987	250	550	0	ENST00000215832.6:c.994G>A	p.Asp332Asn	p.D332N	ENST00000215832	NM_002745.4	332	Gac/Aac																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66766229	66766229	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	151	242	0	ENST00000374690.3:c.1241T>C	p.Leu414Pro	p.L414P	ENST00000374690	NM_000044.3	414	cTg/cCg																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66931357	66931357	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	299	606	1	ENST00000374690.3:c.1999G>T	p.Gly667Cys	p.G667C	ENST00000374690	NM_000044.3	667	Ggc/Tgc																																													NEWRECORD																																		
HLA-A	3105	MSKCC	GRCh37	6	29910537	29910540	+	frameshift_variant	Frame_Shift_Del	DEL	CCCA	CCCA	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	53	102	0	ENST00000376809.5:c.78_81del	p.His27ProfsTer2	p.H27Pfs*2	ENST00000376809	NM_002116.7	26	tCCCAc/tc																																													NEWRECORD																																		
MCL1	4170	MSKCC	GRCh37	1	150551935	150551946	+	inframe_deletion	In_Frame_Del	DEL	GCCGGCCCCCAA	GCCGGCCCCCAA	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	248	359	0	ENST00000369026.2:c.61_72del	p.Leu21_Gly24del	p.L21_G24del	ENST00000369026	NM_021960.4	21	TTGGGGGCCGGC/-																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112116587	112116587	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	88	260	0	ENST00000257430.4:c.636del	p.Lys212AsnfsTer7	p.K212Nfs*7	ENST00000257430	NM_000038.5	211	gAa/ga																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47044511	47044511	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	330	453	0	ENST00000329236.7:c.1778delA	p.Asn593IlefsTer33	p.N593Ifs*33	ENST00000329236	NM_001204466.1	592	Aaa/aa																																													NEWRECORD																																		
PRDM1	639	MSKCC	GRCh37	6	106536080	106536080	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	115	212	1	ENST00000369096.4:c.51del	p.Lys18SerfsTer7	p.K18Sfs*7	ENST00000369096	NM_001198.3	16	gCc/gc																																													NEWRECORD																																		
SOCS1	8651	MSKCC	GRCh37	16	11348998	11348998	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	108	189	0	ENST00000332029.2:c.338del	p.Phe113SerfsTer5	p.F113Sfs*5	ENST00000332029	NM_003745.1	113	tTc/tc																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8500845	8500845	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	158	317	3	ENST00000356435.5:c.2037del	p.Lys679AsnfsTer9	p.K679Nfs*9	ENST00000356435		679	aaA/aa																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66766348	66766348	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	42	69	0	ENST00000374690.3:c.1364del	p.Gly455ValfsTer24	p.G455Vfs*24	ENST00000374690	NM_000044.3	454	Ggg/gg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49426606	49426611	+	inframe_deletion	In_Frame_Del	DEL	TGTTGC	TGTTGC	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1318	356	541	0	ENST00000301067.7:c.11877_11882del	p.Gln3964_Gln3965del	p.Q3964_Q3965del	ENST00000301067	NM_003482.3	3959	caGCAACAa/caa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0013146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	86	515	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	63	415	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0013146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	19	250	2	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023830	27023831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	66	371	1	ENST00000324856.7:c.941dupG	p.Asp315ArgfsTer85	p.D315Rfs*85	ENST00000324856	NM_006015.4	312	-/G																																													NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	93967831	93967831	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	63	736	0	ENST00000369303.4:c.2096G>C	p.Gly699Ala	p.G699A	ENST00000369303	NM_004440.3	699	gGg/gCg																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117710593	117710593	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145765584		P-0013146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	33	417	1	ENST00000368508.3:c.1679G>A	p.Arg560His	p.R560H	ENST00000368508	NM_002944.2	560	cGc/cAc																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157495252	157495252	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0013146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	33	297	0	ENST00000346085.5:c.3135+1G>T		p.X1045_splice	ENST00000346085	NM_020732.3	1045																																														NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39932920	39932920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	110	473	6	ENST00000378444.4:c.1679C>T	p.Ser560Leu	p.S560L	ENST00000378444	NM_001123385.1	560	tCa/tTa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175888	112175894	+	frameshift_variant	Frame_Shift_Del	DEL	AATGGGA	AATGGGA	-			P-0013146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	32	302	0	ENST00000257430.4:c.4598_4604del	p.Asn1533MetfsTer30	p.N1533Mfs*30	ENST00000257430	NM_000038.5	1533	AATGGGAat/at																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0006789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	597	582	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0006789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	509	517	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242494	55242494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	506	474	0	ENST00000275493.2:c.2264C>G	p.Ala755Gly	p.A755G	ENST00000275493	NM_005228.3	755	gCc/gGc																																													NEWRECORD																																		
ERRFI1	54206	MSKCC	GRCh37	1	8074100	8074101	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0006789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1929	340	919	1	ENST00000377482.5:c.557_558dup	p.Thr187LeufsTer61	p.T187Lfs*61	ENST00000377482	NM_018948.3	186	-/CT																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0003070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	168	331	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0003070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	73	314	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17941409	17941409	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	66	196	0	ENST00000458235.1:c.2999C>A	p.Ser1000Ter	p.S1000*	ENST00000458235	NM_000215.3	1000	tCg/tAg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577121	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			P-0003070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	202	466	0	ENST00000269305.4:c.815_817dup	p.Val272_Arg273insLeu	p.V272_R273insL	ENST00000269305	NM_001126112.2	273	cgt/cTGCgt																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	239	377	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	171	383	1	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	171	315	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	206	300	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																													NEWRECORD																																		
AKT3	10000	MSKCC	GRCh37	1	243716032	243716032	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	68	336	0	ENST00000263826.5:c.1162C>T	p.Arg388Cys	p.R388C	ENST00000263826	NM_005465.4	388	Cgc/Tgc																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11190714	11190714	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199646470		P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	94	352	0	ENST00000361445.4:c.5485A>G	p.Thr1829Ala	p.T1829A	ENST00000361445	NM_004958.3	1829	Acc/Gcc																																													NEWRECORD																																		
SDHB	6390	MSKCC	GRCh37	1	17350520	17350520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	127	442	0	ENST00000375499.3:c.590C>T	p.Pro197Leu	p.P197L	ENST00000375499	NM_003000.2	197	cCc/cTc																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27094383	27094383	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	36	342	0	ENST00000324856.7:c.3091A>G	p.Thr1031Ala	p.T1031A	ENST00000324856	NM_006015.4	1031	Act/Gct																																													NEWRECORD																																		
NFE2L2	4780	MSKCC	GRCh37	2	178096135	178096135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	96	334	0	ENST00000397062.3:c.1196C>A	p.Ser399Tyr	p.S399Y	ENST00000397062	NM_006164.4	399	tCt/tAt																																													NEWRECORD																																		
CTLA4	1493	MSKCC	GRCh37	2	204735534	204735534	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	77	324	0	ENST00000302823.3:c.335T>C	p.Val112Ala	p.V112A	ENST00000302823	NM_005214.4	112	gTg/gCg																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227661662	227661662	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	63	294	0	ENST00000305123.5:c.1793A>G	p.His598Arg	p.H598R	ENST00000305123	NM_005544.2	598	cAc/cGc																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187538866	187538866	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	230	284	0	ENST00000441802.2:c.8874A>G	p.Ile2958Met	p.I2958M	ENST00000441802	NM_005245.3	2958	atA/atG																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86667956	86667956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	236	393	2	ENST00000274376.6:c.1720G>A	p.Ala574Thr	p.A574T	ENST00000274376	NM_002890.2	574	Gca/Aca																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112116553	112116553	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	282	423	0	ENST00000257430.4:c.598A>T	p.Met200Leu	p.M200L	ENST00000257430	NM_000038.5	200	Atg/Ttg																																													NEWRECORD																																		
HIST1H1C	3006	MSKCC	GRCh37	6	26056109	26056109	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	112	208	0	ENST00000343677.2:c.548A>G	p.Lys183Arg	p.K183R	ENST00000343677	NM_005319.3	183	aAg/aGg																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55268059	55268059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	143	466	1	ENST00000275493.2:c.2899G>A	p.Glu967Lys	p.E967K	ENST00000275493	NM_005228.3	967	Gaa/Aaa																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140508697	140508697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	141	305	0	ENST00000288602.6:c.603G>T	p.Gln201His	p.Q201H	ENST00000288602	NM_004333.4	201	caG/caT																																													NEWRECORD																																		
XRCC2	7516	MSKCC	GRCh37	7	152345855	152345855	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1638	373	596	0	ENST00000359321.1:c.715A>G	p.Met239Val	p.M239V	ENST00000359321	NM_005431.1	239	Atg/Gtg																																													NEWRECORD																																		
LMO1	4004	MSKCC	GRCh37	11	8248561	8248561	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	109	492	0	ENST00000335790.3:c.326A>T	p.Tyr109Phe	p.Y109F	ENST00000335790	NM_002315.2	109	tAt/tTt																																													NEWRECORD																																		
PGR	5241	MSKCC	GRCh37	11	100933219	100933219	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1365	163	704	0	ENST00000325455.5:c.2171G>T	p.Arg724Met	p.R724M	ENST00000325455	NM_001202474.3	724	aGg/aTg																																													NEWRECORD																																		
IGF1	3479	MSKCC	GRCh37	12	102813366	102813366	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	97	436	0	ENST00000307046.8:c.323A>G	p.Tyr108Cys	p.Y108C	ENST00000307046	NM_001111285.1	108	tAt/tGt																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28931705	28931705	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	90	390	0	ENST00000282397.4:c.2234A>G	p.Tyr745Cys	p.Y745C	ENST00000282397	NM_002019.4	745	tAc/tGc																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110434503	110434503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	68	301	0	ENST00000375856.3:c.3898G>A	p.Gly1300Ser	p.G1300S	ENST00000375856	NM_003749.2	1300	Ggc/Agc																																													NEWRECORD																																		
MAPK3	5595	MSKCC	GRCh37	16	30133176	30133176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	128	532	2	ENST00000263025.4:c.322C>T	p.Arg108Trp	p.R108W	ENST00000263025	NM_002746.2	108	Cgg/Tgg																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63530141	63530141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	115	468	0	ENST00000307078.5:c.2294T>C	p.Val765Ala	p.V765A	ENST00000307078	NM_004655.3	765	gTt/gCt																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11143987	11143987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	167	342	0	ENST00000344626.4:c.3568G>A	p.Ala1190Thr	p.A1190T	ENST00000344626	NM_003072.3	1190	Gcc/Acc																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72830441	72830441	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	79	415	0	ENST00000268489.5:c.6140delC	p.Pro2047LeufsTer54	p.P2047Lfs*54	ENST00000268489	NM_006885.3	2047	cCt/ct																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187517815	187517815	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	78	314	0	ENST00000441802.2:c.12879del	p.His4293GlnfsTer56	p.H4293Qfs*56	ENST00000441802	NM_005245.3	4293	caC/ca																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66286237	66286238	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	360	480	0	ENST00000273854.3:c.1448dup	p.Asn483LysfsTer21	p.N483Kfs*21	ENST00000273854	NM_004439.5	483	aac/aaAc																																													NEWRECORD																																		
PNRC1	10957	MSKCC	GRCh37	6	89793677	89793677	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	129	450	0	ENST00000336032.3:c.752del	p.Lys251SerfsTer14	p.K251Sfs*14	ENST00000336032	NM_006813.2	249	gAa/ga																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157222606	157222606	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	190	416	0	ENST00000346085.5:c.1876del	p.Gln626ArgfsTer42	p.Q626Rfs*42	ENST00000346085	NM_020732.3	625	Ccc/cc																																													NEWRECORD																																		
AURKB	9212	MSKCC	GRCh37	17	8110176	8110177	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	70	376	0	ENST00000585124.1:c.428_429del	p.Tyr143PhefsTer3	p.Y143Ffs*3	ENST00000585124	NM_004217.3	143	tAT/t																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0014863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	330	786	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	88	649	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0014863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	62	634	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0014863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	48	292	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11132465	11132465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1180	194	807	1	ENST00000344626.4:c.2681C>T	p.Thr894Met	p.T894M	ENST00000344626	NM_003072.3	894	aCg/aTg																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114711246	114711247	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	114	546	0	ENST00000543371.1:c.263dup	p.Arg89GlufsTer8	p.R89Efs*8	ENST00000543371	NM_001198531.1	87	-/A																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81979791	81979791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	85	469	1	ENST00000359376.3:c.3493G>A	p.Val1165Ile	p.V1165I	ENST00000359376	NM_002661.3	1165	Gtt/Att																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	300	349	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0011268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	39	198	0				ENST00000310581	NM_198253.2																																															NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	97	312	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971194	21971194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	28	110	0	ENST00000304494.5:c.164G>T	p.Gly55Val	p.G55V	ENST00000304494	NM_000077.4	55	gGc/gTc																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16257453	16257453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	67	437	0	ENST00000375759.3:c.4718C>T	p.Thr1573Ile	p.T1573I	ENST00000375759	NM_015001.2	1573	aCt/aTt																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29541192	29541192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	75	452	2	ENST00000389048.3:c.1625C>T	p.Pro542Leu	p.P542L	ENST00000389048	NM_004304.4	542	cCg/cTg																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89478315	89478315	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0011268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	29	264	0	ENST00000336596.2:c.2134C>G	p.Arg712Gly	p.R712G	ENST00000336596	NM_005233.5	712	Cgt/Ggt																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55146565	55146565	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	53	349	0	ENST00000257290.5:c.2239G>C	p.Glu747Gln	p.E747Q	ENST00000257290	NM_006206.4	747	Gaa/Caa																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139400138	139400138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	74	453	0	ENST00000277541.6:c.4210G>A	p.Glu1404Lys	p.E1404K	ENST00000277541	NM_017617.3	1404	Gag/Aag																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47039893	47039893	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	71	332	0	ENST00000329236.7:c.1002G>T	p.Trp334Cys	p.W334C	ENST00000329236	NM_001204466.1	334	tgG/tgT																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123224455	123224455	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			954	109	557	0	ENST00000218089.9:c.3308G>A	p.Trp1103Ter	p.W1103*	ENST00000218089	NM_001042749.1	1103	tGg/tAg																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974819	21974819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	17	90	0	ENST00000304494.5:c.8del	p.Pro3ArgfsTer23	p.P3Rfs*23	ENST00000304494	NM_000077.4	3	cCg/cg																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89499368	89499369	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	64	372	0	ENST00000336596.2:c.2539dup	p.Met847AsnfsTer26	p.M847Nfs*26	ENST00000336596	NM_005233.5	846	-/A																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0002965-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			663	168	341	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212285225	212285225	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002965-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			798	198	346	0	ENST00000342788.4:c.3076C>T	p.Gln1026Ter	p.Q1026*	ENST00000342788	NM_005235.2	1026	Cag/Tag																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55269458	55269458	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002965-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1112	224	417	0	ENST00000275493.2:c.3145T>C	p.Cys1049Arg	p.C1049R	ENST00000275493	NM_005228.3	1049	Tgc/Cgc																																													NEWRECORD																																		
MDM2	4193	MSKCC	GRCh37	12	69203009	69203009	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002965-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1063	211	353	1	ENST00000462284.1:c.36G>T	p.Met12Ile	p.M12I	ENST00000462284	NM_002392.5	12	atG/atT																																													NEWRECORD																																		
LATS2	26524	MSKCC	GRCh37	13	21553900	21553900	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002965-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			852	193	457	1	ENST00000382592.4:c.2702T>A	p.Val901Glu	p.V901E	ENST00000382592	NM_014572.2	901	gTg/gAg																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59763506	59763506	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002965-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			725	115	255	0	ENST00000259008.2:c.2596C>T	p.Gln866Ter	p.Q866*	ENST00000259008	NM_032043.2	866	Cag/Tag																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17945780	17945781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002965-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			835	151	315	0	ENST00000458235.1:c.2079dup	p.Glu694ArgfsTer10	p.E694Rfs*10	ENST00000458235	NM_000215.3	693	-/C																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0002876-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	200	352	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																													NEWRECORD																																		
ETV1	2115	MSKCC	GRCh37	7	13971133	13971133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002876-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	73	232	0	ENST00000405192.2:c.796G>T	p.Asp266Tyr	p.D266Y	ENST00000405192	NM_001163147.1	266	Gac/Tac																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106509081	106509081	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187257485		P-0002876-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			566	119	368	0	ENST00000359195.3:c.1075C>T	p.Arg359Cys	p.R359C	ENST00000359195	NM_002649.2	359	Cgc/Tgc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0002876-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			237	290	429	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	131	304	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0006213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	200	409	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																													NEWRECORD																																		
CSF3R	1441	MSKCC	GRCh37	1	36939140	36939140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	344	688	1	ENST00000361632.4:c.569G>T	p.Arg190Leu	p.R190L	ENST00000361632		190	cGc/cTc																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114710622	114710622	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1375	350	690	2	ENST00000543371.1:c.107C>A	p.Ser36Ter	p.S36*	ENST00000543371	NM_001198531.1	36	tCg/tAg																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29557286	29557286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	124	367	0	ENST00000358273.4:c.2999G>A	p.Arg1000His	p.R1000H	ENST00000358273	NM_001042492.2	1000	cGt/cAt																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53239880	53239880	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	371	332	0	ENST00000375401.3:c.1561T>A	p.Tyr521Asn	p.Y521N	ENST00000375401	NM_004187.3	521	Tac/Aac																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578247	7578248	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0006213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	253	518	0	ENST00000269305.4:c.601_602del	p.Leu201AlafsTer7	p.L201Afs*7	ENST00000269305	NM_001126112.2	201	TTg/g																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174863	112174864	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0006213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	111	329	0	ENST00000257430.4:c.3573_3574del	p.Lys1192ThrfsTer15	p.K1192Tfs*15	ENST00000257430	NM_000038.5	1191	cAG/c																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175377	112175378	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	61	278	0	ENST00000257430.4:c.4086_4087insT	p.Lys1363Ter	p.K1363*	ENST00000257430	NM_000038.5	1362	-/T																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0014704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	43	640	1	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0014704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	53	500	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88680655	88680655	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142726068		P-0014704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	23	528	1	ENST00000360948.2:c.602G>A	p.Arg201His	p.R201H	ENST00000360948	NM_001012338.2	201	cGc/cAc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578227	7578230	+	frameshift_variant	Frame_Shift_Del	DEL	CATC	CATC	-			P-0014704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	28	841	2	ENST00000269305.4:c.619_622del	p.Asp207ThrfsTer39	p.D207Tfs*39	ENST00000269305	NM_001126112.2	207	GATGac/ac																																													NEWRECORD																																		
INHA	3623	MSKCC	GRCh37	2	220439756	220439757	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	28	763	0	ENST00000243786.2:c.610dup	p.Thr204AsnfsTer7	p.T204Nfs*7	ENST00000243786	NM_002191.3	203	-/A																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0008782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	262	558	2	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																													NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0008782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	229	442	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	127	333	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0008782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	85	295	2	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41274897	41274897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	144	390	0	ENST00000349496.5:c.1147T>C	p.Trp383Arg	p.W383R	ENST00000349496	NM_001904.3	383	Tgg/Cgg																																													NEWRECORD																																		
INHBA	3624	MSKCC	GRCh37	7	41739866	41739866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1119	285	619	0	ENST00000242208.4:c.107C>T	p.Pro36Leu	p.P36L	ENST00000242208	NM_002192.2	36	cCg/cTg																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	152008941	152008941	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	138	523	0	ENST00000262189.6:c.681A>C	p.Glu227Asp	p.E227D	ENST00000262189	NM_170606.2	227	gaA/gaC																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56488244	56488244	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	182	342	1	ENST00000267101.3:c.1763G>T	p.Ser588Ile	p.S588I	ENST00000267101	NM_001982.3	588	aGc/aTc																																													NEWRECORD																																		
MDM2	4193	MSKCC	GRCh37	12	69230456	69230456	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	138	372	0	ENST00000462284.1:c.845A>G	p.Tyr282Cys	p.Y282C	ENST00000462284	NM_002392.5	282	tAt/tGt																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67479845	67479845	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0008782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	185	310	0	ENST00000327367.4:c.1152C>G	p.Tyr384Ter	p.Y384*	ENST00000327367	NM_005902.3	384	taC/taG																																													NEWRECORD																																		
RHEB	6009	MSKCC	GRCh37	7	151167662	151167665	+	frameshift_variant	Frame_Shift_Del	DEL	TTTC	TTTC	-			P-0008782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	187	431	0	ENST00000262187.5:c.454_457del	p.Glu152IlefsTer11	p.E152Ifs*11	ENST00000262187	NM_005614.3	152	GAAAat/at																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	241	786	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																													NEWRECORD																																		
CSF1R	1436	MSKCC	GRCh37	5	149439341	149439341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	153	836	0	ENST00000286301.3:c.2054C>A	p.Pro685His	p.P685H	ENST00000286301	NM_005211.3	685	cCc/cAc																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44870231	44870231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	152	623	3	ENST00000377967.4:c.410G>T	p.Gly137Val	p.G137V	ENST00000377967	NM_021140.2	137	gGt/gTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	201	995	0	ENST00000269305.4:c.853G>C	p.Glu285Gln	p.E285Q	ENST00000269305	NM_001126112.2	285	Gag/Cag																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27102078	27102078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	107	1168	0	ENST00000324856.7:c.5004G>T	p.Glu1668Asp	p.E1668D	ENST00000324856	NM_006015.4	1668	gaG/gaT																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48025945	48025945	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	268	1047	0	ENST00000234420.5:c.823A>G	p.Ser275Gly	p.S275G	ENST00000234420	NM_000179.2	275	Agt/Ggt																																													NEWRECORD																																		
MITF	4286	MSKCC	GRCh37	3	70008571	70008571	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	48	340	0	ENST00000352241.4:c.1161G>T	p.Gln387His	p.Q387H	ENST00000352241	NM_198159.2	387	caG/caT																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71021779	71021779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	84	847	0	ENST00000318789.4:c.1579G>A	p.Glu527Lys	p.E527K	ENST00000318789	NM_032682.5	527	Gaa/Aaa																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89468399	89468399	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	48	440	0	ENST00000336596.2:c.1933A>G	p.Lys645Glu	p.K645E	ENST00000336596	NM_005233.5	645	Aaa/Gaa																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134670744	134670744	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	56	615	1	ENST00000398015.3:c.655G>C	p.Val219Leu	p.V219L	ENST00000398015	NM_004441.4	219	Gtg/Ctg																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134968233	134968233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	79	968	1	ENST00000398015.3:c.2746G>T	p.Val916Leu	p.V916L	ENST00000398015	NM_004441.4	916	Gtg/Ttg																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55970884	55970884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	185	879	1	ENST00000263923.4:c.1913G>A	p.Gly638Glu	p.G638E	ENST00000263923	NM_002253.2	638	gGa/gAa																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106197555	106197555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	199	962	0	ENST00000380013.4:c.5888C>T	p.Thr1963Ile	p.T1963I	ENST00000380013	NM_001127208.2	1963	aCt/aTt																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143029251	143029251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	21	505	0	ENST00000262992.4:c.2369C>T	p.Pro790Leu	p.P790L	ENST00000262992	NM_001101669.1	790	cCt/cTt																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143129593	143129593	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	37	630	0	ENST00000262992.4:c.1057A>G	p.Ser353Gly	p.S353G	ENST00000262992	NM_001101669.1	353	Agc/Ggc																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187542399	187542399	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	59	738	0	ENST00000441802.2:c.5341A>T	p.Asn1781Tyr	p.N1781Y	ENST00000441802	NM_005245.3	1781	Aac/Tac																																													NEWRECORD																																		
PLK2	10769	MSKCC	GRCh37	5	57750453	57750453	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	101	936	1	ENST00000274289.3:c.2015G>T	p.Arg672Leu	p.R672L	ENST00000274289	NM_006622.3	672	cGa/cTa																																													NEWRECORD																																		
HIST1H1C	3006	MSKCC	GRCh37	6	26056519	26056519	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	78	282	0	ENST00000343677.2:c.138G>T	p.Lys46Asn	p.K46N	ENST00000343677	NM_005319.3	46	aaG/aaT																																													NEWRECORD																																		
HIST1H3E	8353	MSKCC	GRCh37	6	26225519	26225519	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1460	257	1759	1	ENST00000360408.1:c.137C>A	p.Thr46Asn	p.T46N	ENST00000360408	NM_003532.2	46	aCc/aAc																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55233050	55233050	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	7137	764	2	ENST00000275493.2:c.1800G>T	p.Met600Ile	p.M600I	ENST00000275493	NM_005228.3	600	atG/atT																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8633340	8633340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	84	1022	0	ENST00000356435.5:c.329C>T	p.Ser110Phe	p.S110F	ENST00000356435		110	tCc/tTc																																													NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63760000	63760000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	184	582	0	ENST00000279873.7:c.653G>T	p.Arg218Met	p.R218M	ENST00000279873	NM_032199.2	218	aGg/aTg																																													NEWRECORD																																		
SDHD	6392	MSKCC	GRCh37	11	111958635	111958635	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	117	518	0	ENST00000375549.3:c.107A>T	p.Gln36Leu	p.Q36L	ENST00000375549	NM_003002.3	36	cAg/cTg																																													NEWRECORD																																		
CDK8	1024	MSKCC	GRCh37	13	26975688	26975688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	202	1167	2	ENST00000381527.3:c.1196C>A	p.Pro399His	p.P399H	ENST00000381527	NM_001260.1	399	cCc/cAc																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110436216	110436216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	87	496	0	ENST00000375856.3:c.2185G>T	p.Ala729Ser	p.A729S	ENST00000375856	NM_003749.2	729	Gcc/Tcc																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95579545	95579545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	28	414	0	ENST00000343455.3:c.1924C>T	p.Pro642Ser	p.P642S	ENST00000343455	NM_177438.2	642	Cca/Tca																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88472450	88472450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	130	826	0	ENST00000360948.2:c.2105G>T	p.Arg702Ile	p.R702I	ENST00000360948	NM_001012338.2	702	aGa/aTa																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99442735	99442735	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	234	995	0	ENST00000268035.6:c.1132A>G	p.Met378Val	p.M378V	ENST00000268035	NM_000875.3	378	Atg/Gtg																																													NEWRECORD																																		
TRAF7	84231	MSKCC	GRCh37	16	2220682	2220682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	167	1028	2	ENST00000326181.6:c.299G>T	p.Ser100Ile	p.S100I	ENST00000326181	NM_032271.2	100	aGc/aTc																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9858247	9858247	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	57	834	0	ENST00000330684.3:c.3154C>G	p.Leu1052Val	p.L1052V	ENST00000330684	NM_001134407.1	1052	Ctt/Gtt																																													NEWRECORD																																		
YES1	7525	MSKCC	GRCh37	18	736898	736898	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	55	940	0	ENST00000314574.4:c.1201A>G	p.Asn401Asp	p.N401D	ENST00000314574	NM_005433.3	401	Aat/Gat																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7117327	7117327	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	224	927	1	ENST00000302850.5:c.3889A>T	p.Ser1297Cys	p.S1297C	ENST00000302850	NM_000208.2	1297	Agc/Tgc																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42791393	42791393	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	190	874	3	ENST00000575354.2:c.452+1G>T		p.X151_splice	ENST00000575354	NM_015125.3	151																																														NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31019150	31019150	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	63	976	0	ENST00000375687.4:c.745G>C	p.Glu249Gln	p.E249Q	ENST00000375687	NM_015338.5	249	Gaa/Caa																																													NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31386436	31386436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	51	768	1	ENST00000328111.2:c.1661C>T	p.Thr554Met	p.T554M	ENST00000328111	NM_006892.3	554	aCg/aTg																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007791	45007801	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTCTTTCTA	TGGTCTTTCTA	-			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	121	762	0	ENST00000558401.1:c.239_249del	p.Trp80SerfsTer6	p.W80Sfs*6	ENST00000558401	NM_004048.2	80	TGGTCTTTCTAt/t																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212248342	212248343	+	frameshift_variant,stop_lost	Frame_Shift_Del	DEL	AC	AC	-			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	59	645	0	ENST00000342788.4:c.3924_3925del	p.Ter1309SerfsTer7	p.*1309Sfs*7	ENST00000342788	NM_005235.2	1308	gtGTaa/gtaa																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55133479	55133479	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	129	821	0	ENST00000257290.5:c.784del	p.Glu262LysfsTer14	p.E262Kfs*14	ENST00000257290	NM_006206.4	261	ctG/ct																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57858948	57858949	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	107	1439	0	ENST00000228682.2:c.447dup	p.Gly150TrpfsTer9	p.G150Wfs*9	ENST00000228682	NM_005269.2	148	-/T																																													NEWRECORD																																		
PLK2	10769	MSKCC	GRCh37	5	57753937	57753938	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	128	911	0	ENST00000274289.3:c.686_687delinsTT	p.Arg229Ile	p.R229I	ENST00000274289	NM_006622.3	229	aGG/aTT																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	45	249	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	48	435	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0010007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	147	435	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180048631	180048631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	104	278	0	ENST00000261937.6:c.1931C>T	p.Ala644Val	p.A644V	ENST00000261937	NM_182925.4	644	gCg/gTg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0010007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	211	441	0	ENST00000257430.4:c.4393_4394dupAG	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	254	437	1	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																													NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64135691	64135691	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151034403		P-0010007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	215	330	0	ENST00000334205.4:c.1159C>T	p.Arg387Trp	p.R387W	ENST00000334205	NM_003942.2	387	Cgg/Tgg																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119884	70119884	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	269	400	0	ENST00000245479.2:c.886C>T	p.Gln296Ter	p.Q296*	ENST00000245479	NM_000346.3	296	Cag/Tag																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187627721	187627721	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000687-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			784	286	244	0	ENST00000441802.2:c.3261G>C	p.Glu1087Asp	p.E1087D	ENST00000441802	NM_005245.3	1087	gaG/gaC																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0000687-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	92	110	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106509421	106509421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000687-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			930	747	229	1	ENST00000359195.3:c.1415G>A	p.Arg472His	p.R472H	ENST00000359195	NM_002649.2	472	cGt/cAt																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5243923	5243923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000687-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	116	152	0	ENST00000357368.4:c.1559C>T	p.Thr520Met	p.T520M	ENST00000357368	NM_002850.3	520	aCg/aTg																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40713350	40713350	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000687-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			782	88	144	0	ENST00000373198.4:c.4165A>T	p.Arg1389Trp	p.R1389W	ENST00000373198	NM_133170.3	1389	Agg/Tgg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000687-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			262	224	112	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577114	7577115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000687-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	679	247	0	ENST00000269305.4:c.823dupT	p.Cys275LeufsTer31	p.C275Lfs*31	ENST00000269305	NM_001126112.2	275	tgt/tTgt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	163	397	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32913233	32913233	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	384	1139	1	ENST00000380152.3:c.4741G>T	p.Glu1581Ter	p.E1581*	ENST00000380152		1581	Gag/Tag																																													NEWRECORD																																		
IGF1	3479	MSKCC	GRCh37	12	102869478	102869478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	158	408	1	ENST00000307046.8:c.163G>A	p.Gly55Arg	p.G55R	ENST00000307046	NM_001111285.1	55	Ggg/Agg																																													NEWRECORD																																		
MYC	4609	MSKCC	GRCh37	8	128753151	128753151	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	180	443	0	ENST00000377970.2:c.1312C>G	p.Arg438Gly	p.R438G	ENST00000377970	NM_002467.4	438	Cga/Gga																																													NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28608046	28608046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	271	846	0	ENST00000241453.7:c.1920G>T	p.Gln640His	p.Q640H	ENST00000241453	NM_004119.2	640	caG/caT																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46243523	46243545	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGTTCCTGATGTATCTCCTGC	TCTGTTCCTGATGTATCTCCTGC	-			P-0011529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	53	622	0	ENST00000334344.6:c.1878_1900del	p.Val627PhefsTer72	p.V627Ffs*72	ENST00000334344	NM_152641.2	626	TCTGTTCCTGATGTATCTCCTGCt/t																																													NEWRECORD																																		
GNA11	2767	MSKCC	GRCh37	19	3118934	3118934	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	287	376	1	ENST00000078429.4:c.623del	p.Gly208AlafsTer16	p.G208Afs*16	ENST00000078429	NM_002067.2	206	gtG/gt																																													NEWRECORD																																		
AKT3	10000	MSKCC	GRCh37	1	243736302	243736302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	303	395	0	ENST00000263826.5:c.745C>A	p.Arg249Ser	p.R249S	ENST00000263826	NM_005465.4	249	Cgt/Agt																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	17	336	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	194	315	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	932	435	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	366	363	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10600393	10600393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	685	481	1	ENST00000171111.5:c.1462G>A	p.Glu488Lys	p.E488K	ENST00000171111	NM_203500.1	488	Gag/Aag																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10247836	10247836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	336	498	3	ENST00000340748.4:c.4366C>T	p.Arg1456Trp	p.R1456W	ENST00000340748		1456	Cgg/Tgg																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16235913	16235913	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	192	448	0	ENST00000375759.3:c.979G>T	p.Glu327Ter	p.E327*	ENST00000375759	NM_015001.2	327	Gaa/Taa																																													NEWRECORD																																		
CDC73	79577	MSKCC	GRCh37	1	193104711	193104711	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	366	381	0	ENST00000367435.3:c.415C>T	p.Arg139Ter	p.R139*	ENST00000367435	NM_024529.4	139	Cga/Tga																																													NEWRECORD																																		
BCL2L11	10018	MSKCC	GRCh37	2	111881543	111881543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	302	364	0	ENST00000393256.3:c.221C>T	p.Ala74Val	p.A74V	ENST00000393256	NM_006538.4	74	gCt/gTt																																													NEWRECORD																																		
MST1	4485	MSKCC	GRCh37	3	49723051	49723051	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	29	133	0	ENST00000449682.2:c.1365C>A	p.Asp455Glu	p.D455E	ENST00000449682	NM_020998.3	455	gaC/gaA																																													NEWRECORD																																		
KIT	3815	MSKCC	GRCh37	4	55589818	55589818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	284	443	0	ENST00000288135.5:c.1300C>A	p.Pro434Thr	p.P434T	ENST00000288135	NM_000222.2	434	Cca/Aca																																													NEWRECORD																																		
PIM1	5292	MSKCC	GRCh37	6	37138779	37138779	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	167	327	0	ENST00000373509.5:c.212A>G	p.Lys71Arg	p.K71R	ENST00000373509	NM_002648.3	71	aAg/aGg																																													NEWRECORD																																		
PRDM1	639	MSKCC	GRCh37	6	106552735	106552735	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	329	424	0	ENST00000369096.4:c.700G>T	p.Glu234Ter	p.E234*	ENST00000369096	NM_001198.3	234	Gag/Tag																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968253	2968253	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1298	247	455	0	ENST00000396946.4:c.1733A>G	p.Lys578Arg	p.K578R	ENST00000396946	NM_032415.4	578	aAg/aGg																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81372746	81372746	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	305	328	1	ENST00000222390.5:c.788C>A	p.Pro263His	p.P263H	ENST00000222390	NM_000601.4	263	cCc/cAc																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140434413	140434413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	371	409	0	ENST00000288602.6:c.2285C>T	p.Ala762Val	p.A762V	ENST00000288602	NM_004333.4	762	gCg/gTg																																													NEWRECORD																																		
KLF4	9314	MSKCC	GRCh37	9	110249861	110249861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	120	180	0	ENST00000374672.4:c.814C>T	p.Arg272Cys	p.R272C	ENST00000374672	NM_004235.4	272	Cgc/Tgc																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70333191	70333191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	157	399	0	ENST00000373644.4:c.1096G>A	p.Gly366Arg	p.G366R	ENST00000373644	NM_030625.2	366	Gga/Aga																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18658226	18658226	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	512	331	0	ENST00000266497.5:c.3031G>T	p.Ala1011Ser	p.A1011S	ENST00000266497		1011	Gcc/Tcc																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46230438	46230438	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	694	338	0	ENST00000334344.6:c.772G>T	p.Glu258Ter	p.E258*	ENST00000334344	NM_152641.2	258	Gaa/Taa																																													NEWRECORD																																		
IGF1	3479	MSKCC	GRCh37	12	102811613	102811613	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	521	366	0	ENST00000307046.8:c.571G>T	p.Gly191Cys	p.G191C	ENST00000307046	NM_001111285.1	191	Ggc/Tgc																																													NEWRECORD																																		
IGF1	3479	MSKCC	GRCh37	12	102813333	102813333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	857	367	1	ENST00000307046.8:c.356G>T	p.Arg119Leu	p.R119L	ENST00000307046	NM_001111285.1	119	cGc/cTc																																													NEWRECORD																																		
CD276	80381	MSKCC	GRCh37	15	73991982	73991982	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	311	468	0	ENST00000318443.5:c.2T>C	p.Met1?	p.M1?	ENST00000318443	NM_001024736.1	1	aTg/aCg																																													NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	347931	347931	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	568	482	0	ENST00000262320.3:c.1575C>G	p.Asp525Glu	p.D525E	ENST00000262320	NM_003502.3	525	gaC/gaG																																													NEWRECORD																																		
TRAF7	84231	MSKCC	GRCh37	16	2222308	2222308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	66	472	0	ENST00000326181.6:c.592G>A	p.Gly198Arg	p.G198R	ENST00000326181	NM_032271.2	198	Ggg/Agg																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3778854	3778854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	240	384	0	ENST00000262367.5:c.6194G>A	p.Ser2065Asn	p.S2065N	ENST00000262367	NM_004380.2	2065	aGc/aAc																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63530172	63530172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1317	486	438	0	ENST00000307078.5:c.2263G>A	p.Gly755Ser	p.G755S	ENST00000307078	NM_004655.3	755	Ggt/Agt																																													NEWRECORD																																		
TCF3	6929	MSKCC	GRCh37	19	1619834	1619834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	589	523	1	ENST00000344749.5:c.1112G>A	p.Arg371Gln	p.R371Q	ENST00000344749	NM_001136139.2	371	cGa/cAa																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7125497	7125497	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	60	439	0	ENST00000302850.5:c.3055T>G	p.Ser1019Ala	p.S1019A	ENST00000302850	NM_000208.2	1019	Tct/Gct																																													NEWRECORD																																		
PIK3R2	5296	MSKCC	GRCh37	19	18266769	18266769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	243	330	0	ENST00000222254.8:c.80C>T	p.Pro27Leu	p.P27L	ENST00000222254	NM_005027.3	27	cCc/cTc																																													NEWRECORD																																		
CCNE1	898	MSKCC	GRCh37	19	30308117	30308117	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	575	393	0	ENST00000262643.3:c.254G>T	p.Arg85Leu	p.R85L	ENST00000262643	NM_001238.2	85	cGg/cTg																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9523309	9523309	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	310	385	0	ENST00000353224.5:c.1928A>T	p.Tyr643Phe	p.Y643F	ENST00000353224	NM_177990.2	643	tAc/tTc																																													NEWRECORD																																		
TMPRSS2	7113	MSKCC	GRCh37	21	42845267	42845267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	247	349	0	ENST00000398585.3:c.995C>T	p.Ala332Val	p.A332V	ENST00000398585	NM_001135099.1	332	gCc/gTc																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44929167	44929167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	319	254	1	ENST00000377967.4:c.2267C>T	p.Ala756Val	p.A756V	ENST00000377967	NM_021140.2	756	gCa/gTa																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70356792	70356792	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	369	295	0	ENST00000374080.3:c.5464C>A	p.His1822Asn	p.H1822N	ENST00000374080		1822	Cac/Aac																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16263730	16263768	+	inframe_deletion	In_Frame_Del	DEL	CCACCCTGCCCGCCCTCCCAGCTCGGTCAGCCCGGCCAG	CCACCCTGCCCGCCCTCCCAGCTCGGTCAGCCCGGCCAG	-			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	218	269	0	ENST00000375759.3:c.10104_10142del	p.Cys3369_Pro3381del	p.C3369_P3381del	ENST00000375759	NM_015001.2	3367	CCACCCTGCCCGCCCTCCCAGCTCGGTCAGCCCGGCCAG/-																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73352417	73352418	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	177	343	0	ENST00000377767.4:c.487dup	p.Met163AsnfsTer15	p.M163Nfs*15	ENST00000377767	NM_014953.3	163	atg/aAtg																																													NEWRECORD																																		
NFKBIA	4792	MSKCC	GRCh37	14	35872461	35872461	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	349	504	1	ENST00000216797.5:c.442del	p.Leu148TyrfsTer16	p.L148Yfs*16	ENST00000216797	NM_020529.2	148	Cta/ta																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112176179	112176182	+	frameshift_variant	Frame_Shift_Del	DEL	GTTA	GTTA	-			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	87	411	0	ENST00000257430.4:c.4891_4894del	p.Ser1631LeufsTer18	p.S1631Lfs*18	ENST00000257430	NM_000038.5	1630	GTTAgt/gt																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86645146	86645149	+	frameshift_variant	Frame_Shift_Del	DEL	CAAT	CAAT	-			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	256	286	0	ENST00000274376.6:c.1220_1223del	p.Asn407SerfsTer3	p.N407Sfs*3	ENST00000274376	NM_002890.2	406	aaCAAT/aa																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64577497	64577497	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002244-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	323	202	0	ENST00000337652.1:c.85C>T	p.Arg29Ter	p.R29*	ENST00000337652	NM_130803.2	29	Cga/Tga																																													NEWRECORD																																		
TRAF7	84231	MSKCC	GRCh37	16	2226330	2226330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002244-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			664	605	300	1	ENST00000326181.6:c.1943C>T	p.Ala648Val	p.A648V	ENST00000326181	NM_032271.2	648	gCg/gTg																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15296182	15296182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002244-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	296	239	0	ENST00000263388.2:c.2182C>T	p.Arg728Cys	p.R728C	ENST00000263388	NM_000435.2	728	Cgc/Tgc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115725	8115728	+	frameshift_variant	Frame_Shift_Del	DEL	GAAG	GAAG	-			P-0002244-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			524	439	346	0	ENST00000346208.3:c.1076_1079delAAGG	p.Glu359AlafsTer44	p.E359Afs*44	ENST00000346208		357	aaGAAG/aa																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115888	8115889	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002244-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			521	365	323	0	ENST00000346208.3:c.1236dupC	p.Ser413GlnfsTer94	p.S413Qfs*94	ENST00000346208		412	tcc/tCcc																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11123722	11123722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	266	249	0	ENST00000344626.4:c.2372C>T	p.Ala791Val	p.A791V	ENST00000344626	NM_003072.3	791	gCg/gTg																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156843595	156843595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139875058		P-0003586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	92	386	2	ENST00000524377.1:c.1021G>A	p.Val341Met	p.V341M	ENST00000524377	NM_002529.3	341	Gtg/Atg																																													NEWRECORD																																		
KIT	3815	MSKCC	GRCh37	4	55575658	55575658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	176	282	0	ENST00000288135.5:c.1184C>T	p.Ser395Phe	p.S395F	ENST00000288135	NM_000222.2	395	tCc/tTc																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149514489	149514489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	274	224	0	ENST00000261799.4:c.455C>A	p.Thr152Lys	p.T152K	ENST00000261799	NM_002609.3	152	aCa/aAa																																													NEWRECORD																																		
TSHR	7253	MSKCC	GRCh37	14	81554353	81554353	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	305	315	0	ENST00000298171.2:c.373C>G	p.Leu125Val	p.L125V	ENST00000298171	NM_000369.2	125	Ctc/Gtc																																													NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105239429	105239429	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0003586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	68	166	0	ENST00000349310.3:c.958G>T	p.Val320Leu	p.V320L	ENST00000349310	NM_001014432.1	320	Gtg/Ttg																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59876593	59876593	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	73	179	0	ENST00000259008.2:c.1208G>T	p.Arg403Leu	p.R403L	ENST00000259008	NM_032043.2	403	cGg/cTg																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10602907	10602907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	227	189	0	ENST00000171111.5:c.671C>T	p.Ser224Phe	p.S224F	ENST00000171111	NM_203500.1	224	tCc/tTc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579546	7579547	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	240	192	1	ENST00000269305.4:c.140_141insT	p.Asp48GlyfsTer4	p.D48Gfs*4	ENST00000269305	NM_001126112.2	47	ccg/ccTg																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212989482	212989483	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0003586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	107	219	3	ENST00000342788.4:c.228_229delinsAA	p.Phe76_Leu77delinsLeuMet	p.F76_L77delinsLM	ENST00000342788	NM_005235.2	76	ttCCtg/ttAAtg																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17952518	17952519	+	missense_variant	Missense_Mutation	DNP	CT	CT	TG			P-0003586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	157	171	0	ENST00000458235.1:c.914_915delinsCA	p.Gln305Pro	p.Q305P	ENST00000458235	NM_000215.3	305	cAG/cCA																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68845699	68845700	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008304-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	232	514	2	ENST00000261769.5:c.946dup	p.Met316AsnfsTer5	p.M316Nfs*5	ENST00000261769	NM_004360.3	315	-/A																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	37	366	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72828353	72828353	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	32	746	0	ENST00000268489.5:c.8228A>G	p.Tyr2743Cys	p.Y2743C	ENST00000268489	NM_006885.3	2743	tAc/tGc																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101116	27101117	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	13	540	0	ENST00000324856.7:c.4403dup	p.Gly1469TrpfsTer22	p.G1469Wfs*22	ENST00000324856	NM_006015.4	1466	-/C																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578226	7578226	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1464727668		P-0012176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	257	907	0	ENST00000269305.4:c.623A>T	p.Asp208Val	p.D208V	ENST00000269305	NM_001126112.2	208	gAc/gTc																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36259295	36259296	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	116	269	0	ENST00000300305.3:c.195dup	p.Ala66CysfsTer72	p.A66Cfs*72	ENST00000300305		65	-/T																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	230	509	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
ERCC3	2071	MSKCC	GRCh37	2	128050332	128050332	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs34295337		P-0007601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	121	456	0	ENST00000285398.2:c.325C>T	p.Arg109Ter	p.R109*	ENST00000285398	NM_000122.1	109	Cga/Tga																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68842658	68842659	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	270	643	0	ENST00000261769.5:c.595dupA	p.Thr199AsnfsTer10	p.T199Nfs*10	ENST00000261769	NM_004360.3	198	-/A																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81372752	81372752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	129	508	0	ENST00000222390.5:c.782G>A	p.Arg261His	p.R261H	ENST00000222390	NM_000601.4	261	cGc/cAc																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108172487	108172487	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1023	243	491	0	ENST00000278616.4:c.5290C>G	p.Leu1764Val	p.L1764V	ENST00000278616	NM_000051.3	1764	Cta/Gta																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10247911	10247911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	81	302	0	ENST00000340748.4:c.4291G>T	p.Ala1431Ser	p.A1431S	ENST00000340748		1431	Gcc/Tcc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	182	427	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0010255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	119	538	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30713856	30713856	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	133	419	0	ENST00000359013.4:c.1256G>T	p.Cys419Phe	p.C419F	ENST00000359013	NM_001024847.2	419	tGc/tTc																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73343037	73343037	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	111	284	0	ENST00000377767.4:c.1769A>T	p.Tyr590Phe	p.Y590F	ENST00000377767	NM_014953.3	590	tAt/tTt																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5240340	5240340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	84	447	1	ENST00000357368.4:c.1574C>T	p.Pro525Leu	p.P525L	ENST00000357368	NM_002850.3	525	cCg/cTg																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44894225	44894226	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	202	587	0	ENST00000377967.4:c.615dup	p.Glu206Ter	p.E206*	ENST00000377967	NM_021140.2	205	gct/gcTt																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	60	284	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	40	247	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117718106	117718106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	130	740	0	ENST00000368508.3:c.751T>C	p.Tyr251His	p.Y251H	ENST00000368508	NM_002944.2	251	Tac/Cac																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42796883	42796883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	203	885	2	ENST00000575354.2:c.3347del	p.Pro1116GlnfsTer45	p.P1116Qfs*45	ENST00000575354	NM_015125.3	1114	gCc/gc																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	221	648	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																													NEWRECORD																																		
GATA2	2624	MSKCC	GRCh37	3	128204842	128204842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	184	929	4	ENST00000341105.2:c.599del	p.Gly200ValfsTer18	p.G200Vfs*18	ENST00000341105	NM_032638.4	200	gGt/gt																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1166	200	1214	6	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	126	680	5	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	94	557	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	247	596	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135785963	135785964	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	101	617	0	ENST00000298552.3:c.1257dupC	p.Arg420GlnfsTer22	p.R420Qfs*22	ENST00000298552	NM_001162426.1	419	-/C																																													NEWRECORD																																		
PARP1	142	MSKCC	GRCh37	1	226567647	226567647	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	131	659	5	ENST00000366794.5:c.1519delA	p.Ser507AlafsTer17	p.S507Afs*17	ENST00000366794	NM_001618.3	507	Agc/gc																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	151	733	0	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	103	857	3	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																													NEWRECORD																																		
CSF1R	1436	MSKCC	GRCh37	5	149460476	149460476	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	114	756	0	ENST00000286301.3:c.161del	p.Pro54HisfsTer58	p.P54Hfs*58	ENST00000286301	NM_005211.3	54	cCa/ca																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47639588	47639588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	129	490	1	ENST00000233146.2:c.687del	p.Ala230LeufsTer16	p.A230Lfs*16	ENST00000233146	NM_000251.2	227	agA/ag																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108213958	108213959	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	91	596	0	ENST00000278616.4:c.8283_8284del	p.Gln2762AlafsTer6	p.Q2762Afs*6	ENST00000278616	NM_000051.3	2760	CTc/c																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112177864	112177864	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	51	477	0	ENST00000257430.4:c.6579del	p.Val2194PhefsTer5	p.V2194Ffs*5	ENST00000257430	NM_000038.5	2191	ggA/gg																																													NEWRECORD																																		
IRF4	3662	MSKCC	GRCh37	6	401637	401637	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	61	602	0	ENST00000380956.4:c.963delC	p.Asp322ThrfsTer62	p.D322Tfs*62	ENST00000380956	NM_001195286.1	320	gCc/gc																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41765753	41765753	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761731744		P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	117	521	2	ENST00000301178.4:c.2629G>A	p.Ala877Thr	p.A877T	ENST00000301178	NM_021913.4	877	Gct/Act																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101417	27101417	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	54	679	1	ENST00000324856.7:c.4703delC	p.Pro1568LeufsTer44	p.P1568Lfs*44	ENST00000324856	NM_006015.4	1567	Ccc/cc																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49431722	49431722	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	183	868	0	ENST00000301067.7:c.9417del	p.Lys3140ArgfsTer2	p.K3140Rfs*2	ENST00000301067	NM_003482.3	3139	ccC/cc																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65311293	65311293	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	123	903	1	ENST00000342505.4:c.2018del	p.Gly673ValfsTer30	p.G673Vfs*30	ENST00000342505	NM_002227.2	673	gGt/gt																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16255563	16255563	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	75	622	1	ENST00000375759.3:c.2828A>G	p.Lys943Arg	p.K943R	ENST00000375759	NM_015001.2	943	aAg/aGg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106390	27106390	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	51	478	0	ENST00000324856.7:c.6001A>G	p.Met2001Val	p.M2001V	ENST00000324856	NM_006015.4	2001	Atg/Gtg																																													NEWRECORD																																		
JUN	3725	MSKCC	GRCh37	1	59248633	59248633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1064	64	857	1	ENST00000371222.2:c.110G>T	p.Ser37Ile	p.S37I	ENST00000371222	NM_002228.3	37	aGc/aTc																																													NEWRECORD																																		
PARP1	142	MSKCC	GRCh37	1	226564924	226564924	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	124	803	0	ENST00000366794.5:c.1826A>G	p.Asp609Gly	p.D609G	ENST00000366794	NM_001618.3	609	gAt/gGt																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48010391	48010391	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	83	618	0	ENST00000234420.5:c.19C>A	p.Leu7Met	p.L7M	ENST00000234420	NM_000179.2	7	Ctg/Atg																																													NEWRECORD																																		
INPP4A	3631	MSKCC	GRCh37	2	99172172	99172172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	106	798	0	ENST00000074304.5:c.1738G>T	p.Ala580Ser	p.A580S	ENST00000074304	NM_001134224.1	580	Gcc/Tcc																																													NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242794898	242794898	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138016578		P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	90	778	1	ENST00000334409.5:c.311G>A	p.Arg104His	p.R104H	ENST00000334409	NM_005018.2	104	cGt/cAt																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30691910	30691910	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	35	484	0	ENST00000359013.4:c.487T>C	p.Cys163Arg	p.C163R	ENST00000359013	NM_001024847.2	163	Tgt/Cgt																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187557947	187557947	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	134	728	2	ENST00000441802.2:c.3764C>A	p.Pro1255His	p.P1255H	ENST00000441802	NM_005245.3	1255	cCt/cAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112178714	112178714	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	111	749	0	ENST00000257430.4:c.7423A>G	p.Thr2475Ala	p.T2475A	ENST00000257430	NM_000038.5	2475	Act/Gct																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176662867	176662867	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	55	521	0	ENST00000439151.2:c.3842T>C	p.Leu1281Pro	p.L1281P	ENST00000439151	NM_022455.4	1281	cTt/cCt																																													NEWRECORD																																		
HLA-A	3105	MSKCC	GRCh37	6	29910368	29910368	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	132	853	0	ENST00000376809.5:c.38T>G	p.Leu13Arg	p.L13R	ENST00000376809	NM_002116.7	13	cTc/cGc																																													NEWRECORD																																		
DAXX	1616	MSKCC	GRCh37	6	33288785	33288785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	108	394	0	ENST00000374542.5:c.767G>A	p.Arg256His	p.R256H	ENST00000374542	NM_001141970.1	256	cGc/cAc																																													NEWRECORD																																		
TNFAIP3	7128	MSKCC	GRCh37	6	138199898	138199898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	32	340	1	ENST00000237289.4:c.1316G>A	p.Arg439Gln	p.R439Q	ENST00000237289	NM_001270507.1	439	cGg/cAg																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145738633	145738633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	50	257	0	ENST00000428558.2:c.2431C>T	p.Pro811Ser	p.P811S	ENST00000428558	NM_004260.3	811	Cct/Tct																																													NEWRECORD																																		
SYK	6850	MSKCC	GRCh37	9	93624598	93624598	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	149	717	0	ENST00000375746.1:c.689A>G	p.Glu230Gly	p.E230G	ENST00000375746	NM_001174167.1	230	gAg/gGg																																													NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133759832	133759832	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145494071		P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	102	417	0	ENST00000318560.5:c.2155G>A	p.Ala719Thr	p.A719T	ENST00000318560	NM_005157.4	719	Gcc/Acc																																													NEWRECORD																																		
IGF2	3481	MSKCC	GRCh37	11	2154426	2154426	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	143	917	0	ENST00000434045.2:c.502A>G	p.Lys168Glu	p.K168E	ENST00000434045	NM_001127598.1	168	Aag/Gag																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108196146	108196146	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	43	617	0	ENST00000278616.4:c.6682A>C	p.Thr2228Pro	p.T2228P	ENST00000278616	NM_000051.3	2228	Aca/Cca																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46244815	46244815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1270	67	1050	1	ENST00000334344.6:c.2909C>A	p.Pro970Gln	p.P970Q	ENST00000334344	NM_152641.2	970	cCa/cAa																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003794	45003794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	74	669	1	ENST00000558401.1:c.50G>A	p.Gly17Asp	p.G17D	ENST00000558401	NM_004048.2	17	gGc/gAc																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9858538	9858538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	46	849	1	ENST00000330684.3:c.2863A>G	p.Ile955Val	p.I955V	ENST00000330684	NM_001134407.1	955	Att/Gtt																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68849487	68849487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	148	881	0	ENST00000261769.5:c.1390G>A	p.Val464Ile	p.V464I	ENST00000261769	NM_004360.3	464	Gtc/Atc																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68862207	68862207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	95	505	0	ENST00000261769.5:c.2295G>T	p.Gln765His	p.Q765H	ENST00000261769	NM_004360.3	765	caG/caT																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81957133	81957133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	325	994	3	ENST00000359376.3:c.2351G>A	p.Arg784Gln	p.R784Q	ENST00000359376	NM_002661.3	784	cGa/cAa																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15935665	15935665	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	121	592	0	ENST00000268712.3:c.7268A>C	p.Glu2423Ala	p.E2423A	ENST00000268712	NM_006311.3	2423	gAg/gCg																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17118585	17118585	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	70	718	0	ENST00000285071.4:c.1346T>C	p.Leu449Pro	p.L449P	ENST00000285071	NM_144997.5	449	cTc/cCc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5220129	5220129	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	58	445	0	ENST00000357368.4:c.3586C>A	p.Leu1196Met	p.L1196M	ENST00000357368	NM_002850.3	1196	Ctg/Atg																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10602847	10602847	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	94	706	0	ENST00000171111.5:c.731A>G	p.Glu244Gly	p.E244G	ENST00000171111	NM_203500.1	244	gAg/gGg																																													NEWRECORD																																		
CD79A	973	MSKCC	GRCh37	19	42384771	42384771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1312	77	1134	0	ENST00000221972.3:c.533C>T	p.Ala178Val	p.A178V	ENST00000221972	NM_021601.3	178	gCc/gTc																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50917041	50917041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1231	229	1144	2	ENST00000440232.2:c.2293G>A	p.Val765Met	p.V765M	ENST00000440232	NM_002691.3	765	Gtg/Atg																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31024687	31024687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	139	956	1	ENST00000375687.4:c.4172G>A	p.Ser1391Asn	p.S1391N	ENST00000375687	NM_015338.5	1391	aGt/aAt																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70354981	70354981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1148	172	1044	0	ENST00000374080.3:c.4903G>A	p.Val1635Ile	p.V1635I	ENST00000374080		1635	Gtt/Att																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123196990	123196990	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	57	829	0	ENST00000218089.9:c.1756A>G	p.Thr586Ala	p.T586A	ENST00000218089	NM_001042749.1	586	Act/Gct																																													NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215645737	215645738	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	127	715	0	ENST00000260947.4:c.860_861del	p.Glu287ValfsTer5	p.E287Vfs*5	ENST00000260947	NM_000465.2	287	gAG/g																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112179036	112179036	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	46	495	0	ENST00000257430.4:c.7749del	p.Ala2584GlnfsTer9	p.A2584Qfs*9	ENST00000257430	NM_000038.5	2582	gAa/ga																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59926603	59926603	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	74	525	0	ENST00000259008.2:c.394del	p.Thr132ProfsTer25	p.T132Pfs*25	ENST00000259008	NM_032043.2	132	Acc/cc																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30675433	30675433	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	137	709	0	ENST00000376406.3:c.2923del	p.Asp975ThrfsTer23	p.D975Tfs*23	ENST00000376406	NM_014641.2	975	Gac/ac																																													NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138382756	138382756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	51	654	2	ENST00000289153.2:c.2788del	p.Thr930LeufsTer62	p.T930Lfs*62	ENST00000289153	NM_006219.2	930	Act/ct																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52620679	52620679	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	64	451	0	ENST00000394830.3:c.3074del	p.Asn1025ThrfsTer109	p.N1025Tfs*109	ENST00000394830	NM_018313.4	1025	aAc/ac																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49434982	49434983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	77	419	0	ENST00000301067.7:c.6570dupC	p.Thr2191HisfsTer11	p.T2191Hfs*11	ENST00000301067	NM_003482.3	2190	-/C																																													NEWRECORD																																		
TCF3	6929	MSKCC	GRCh37	19	1619216	1619216	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	207	949	0	ENST00000344749.5:c.1344del	p.Glu449ArgfsTer37	p.E449Rfs*37	ENST00000344749	NM_001136139.2	448	ccC/cc																																													NEWRECORD																																		
GATA1	2623	MSKCC	GRCh37	X	48649561	48649561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	197	1201	0	ENST00000376670.3:c.49del	p.Gln17SerfsTer120	p.Q17Sfs*120	ENST00000376670	NM_002049.3	15	ctC/ct																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10249243	10249243	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	168	600	0	ENST00000340748.4:c.3939del	p.Ile1314SerfsTer28	p.I1314Sfs*28	ENST00000340748		1313	gcC/gc																																													NEWRECORD																																		
SH2D1A	4068	MSKCC	GRCh37	X	123480586	123480587	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	35	564	0	ENST00000371139.4:c.97dup	p.Asp33GlyfsTer35	p.D33Gfs*35	ENST00000371139	NM_001114937.2	32	agg/aGgg																																													NEWRECORD																																		
CHEK2	11200	MSKCC	GRCh37	22	29083899	29083900	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	32	209	0	ENST00000328354.6:c.1617_1618delTG	p.Ala540CysfsTer9	p.A540Cfs*9	ENST00000328354	NM_007194.3	539	tgTGct/tgct																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925318	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	220	982	0	ENST00000543371.1:c.1402_1403del	p.Lys468ValfsTer8	p.K468Vfs*8	ENST00000543371	NM_001198531.1	465	agAAaa/agaa																																													NEWRECORD																																		
MDM2	4193	MSKCC	GRCh37	12	69233239	69233240	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	137	744	0	ENST00000462284.1:c.1111dup	p.Thr371AsnfsTer5	p.T371Nfs*5	ENST00000462284	NM_002392.5	368	-/A																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	10	252	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	121	379	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0004566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	303	438	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32170027	32170027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	255	516	1	ENST00000375023.3:c.3581C>T	p.Pro1194Leu	p.P1194L	ENST00000375023	NM_004557.3	1194	cCg/cTg																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30670619	30670619	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	223	492	0	ENST00000376406.3:c.5901A>C	p.Glu1967Asp	p.E1967D	ENST00000376406	NM_014641.2	1967	gaA/gaC																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175694	112175706	+	frameshift_variant	Frame_Shift_Del	DEL	AGCAAGCTGCAGT	AGCAAGCTGCAGT	-			P-0004566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	342	449	1	ENST00000257430.4:c.4404_4416del	p.Gln1469MetfsTer34	p.Q1469Mfs*34	ENST00000257430	NM_000038.5	1468	aAGCAAGCTGCAGTa/aa																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925316	114925317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769592153		P-0004566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	503	537	17	ENST00000543371.1:c.1403dup	p.Cys469ValfsTer8	p.C469Vfs*8	ENST00000543371	NM_001198531.1	465	aga/agAa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0010680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	386	357	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0010680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	184	245	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0010680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1265	879	680	1	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0010680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	621	788	0	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																													NEWRECORD																																		
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	178	279	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108129749	108129749	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	394	370	0	ENST00000278616.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000278616	NM_000051.3	805	Cga/Tga																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2953076	2953076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	252	322	0	ENST00000396946.4:c.2864G>A	p.Gly955Asp	p.G955D	ENST00000396946	NM_032415.4	955	gGc/gAc																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212248648	212248648	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			954	86	456	0	ENST00000342788.4:c.3619C>G	p.Leu1207Val	p.L1207V	ENST00000342788	NM_005235.2	1207	Ctg/Gtg																																													NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185190946	185190946	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1416	308	869	0	ENST00000265026.3:c.1827G>C	p.Gln609His	p.Q609H	ENST00000265026	NM_004721.4	609	caG/caC																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187521306	187521306	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	322	646	1	ENST00000441802.2:c.11849T>A	p.Val3950Glu	p.V3950E	ENST00000441802	NM_005245.3	3950	gTg/gAg																																													NEWRECORD																																		
PLK2	10769	MSKCC	GRCh37	5	57751931	57751931	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55768901		P-0010680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1264	527	689	0	ENST00000274289.3:c.1306G>A	p.Glu436Lys	p.E436K	ENST00000274289	NM_006622.3	436	Gaa/Aaa																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57858552	57858552	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143548857		P-0010680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1245	276	765	1	ENST00000228682.2:c.290C>T	p.Thr97Met	p.T97M	ENST00000228682	NM_005269.2	97	aCg/aTg																																													NEWRECORD																																		
NCOA3	8202	MSKCC	GRCh37	20	46266423	46266423	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1075	282	703	0	ENST00000371998.3:c.2408T>A	p.Ile803Asn	p.I803N	ENST00000371998		803	aTt/aAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175645	112175645	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	294	532	0	ENST00000257430.4:c.4354del	p.Val1452TyrfsTer21	p.V1452Yfs*21	ENST00000257430	NM_000038.5	1452	Gta/ta																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398262	25398262	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913538		P-0014036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	393	388	0	ENST00000256078.4:c.57G>C	p.Leu19Phe	p.L19F	ENST00000256078	NM_033360.2	19	ttG/ttC																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76919014	76919014	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	482	447	0	ENST00000373344.5:c.3977C>G	p.Ser1326Ter	p.S1326*	ENST00000373344	NM_000489.3	1326	tCa/tGa																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64577305	64577307	+	frameshift_variant	Frame_Shift_Ins	INS	AGC	AGC	GCTT			P-0014036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	500	426	0	ENST00000337652.1:c.275_277delinsAAGC	p.Arg92GlnfsTer25	p.R92Qfs*25	ENST00000337652	NM_130803.2	92	cGCTtc/cAAGCtc																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	250	616	0	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			579	176	377	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			735	173	371	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			779	217	444	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15296358	15296358	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			821	230	585	2	ENST00000263388.2:c.2084del	p.Pro695ArgfsTer165	p.P695Rfs*165	ENST00000263388	NM_000435.2	695	cCg/cg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			951	309	537	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116418947	116418947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			586	227	248	1	ENST00000397752.3:c.3458C>T	p.Pro1153Leu	p.P1153L	ENST00000397752	NM_000245.2	1153	cCg/cTg																																													NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			441	78	283	1	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180039583	180039583	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75614493		P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			810	269	568	0	ENST00000261937.6:c.3460G>A	p.Gly1154Arg	p.G1154R	ENST00000261937	NM_182925.4	1154	Gga/Aga																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			411	324	291	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																													NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			443	106	310	0	ENST00000303115.3:c.361delA	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67592108	67592108	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	161	203	0	ENST00000274335.5:c.1924C>T	p.Arg642Ter	p.R642*	ENST00000274335		642	Cga/Tga																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	298	501	0	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			472	143	250	0	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																													NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28578215	28578216	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			758	232	399	1	ENST00000241453.7:c.2955_2956delTC	p.Pro986AlafsTer27	p.P986Afs*27	ENST00000241453	NM_004119.2	985	tcTCcg/tccg																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25523009	25523009	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			973	135	489	0	ENST00000264709.3:c.176delC	p.Pro59ArgfsTer13	p.P59Rfs*13	ENST00000264709	NM_175629.2	59	cCg/cg																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			731	223	405	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																													NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215595164	215595164	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3738888		P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			582	110	350	0	ENST00000260947.4:c.1972C>T	p.Arg658Cys	p.R658C	ENST00000260947	NM_000465.2	658	Cgc/Tgc																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			671	95	338	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																													NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2962929	2962929	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			973	359	588	0	ENST00000396946.4:c.1979G>T	p.Arg660Leu	p.R660L	ENST00000396946	NM_032415.4	660	cGg/cTg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952138	178952138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			463	25	251	0	ENST00000263967.3:c.3193C>T	p.His1065Tyr	p.H1065Y	ENST00000263967	NM_006218.2	1065	Cat/Tat																																													NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			569	175	288	2	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																													NEWRECORD																																		
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			873	257	505	2	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16260214	16260214	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			682	36	342	0	ENST00000375759.3:c.7484delC	p.Pro2495LeufsTer4	p.P2495Lfs*4	ENST00000375759	NM_015001.2	2493	agC/ag																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			641	186	296	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			592	172	351	2	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																													NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			637	178	390	7	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																													NEWRECORD																																		
TCF3	6929	MSKCC	GRCh37	19	1622138	1622138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			790	288	439	2	ENST00000344749.5:c.737C>T	p.Pro246Leu	p.P246L	ENST00000344749	NM_001136139.2	246	cCg/cTg																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47639588	47639588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			504	142	331	1	ENST00000233146.2:c.687del	p.Ala230LeufsTer16	p.A230Lfs*16	ENST00000233146	NM_000251.2	227	agA/ag																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106523486	106523486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	171	259	0	ENST00000359195.3:c.2638G>A	p.Glu880Lys	p.E880K	ENST00000359195	NM_002649.2	880	Gag/Aag																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15355326	15355326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			515	168	307	0	ENST00000263377.2:c.2297C>T	p.Pro766Leu	p.P766L	ENST00000263377	NM_058243.2	766	cCg/cTg																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5214696	5214696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			771	278	459	0	ENST00000357368.4:c.4370G>A	p.Cys1457Tyr	p.C1457Y	ENST00000357368	NM_002850.3	1457	tGt/tAt																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372254	55372254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1358462345		P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	79	451	1	ENST00000297316.4:c.944C>T	p.Pro315Leu	p.P315L	ENST00000297316	NM_022454.3	315	cCg/cTg																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			778	299	429	0	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			658	202	327	4	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																													NEWRECORD																																		
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			779	203	553	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																													NEWRECORD																																		
ERRFI1	54206	MSKCC	GRCh37	1	8074240	8074240	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			683	209	402	1	ENST00000377482.5:c.419del	p.Phe140SerfsTer35	p.F140Sfs*35	ENST00000377482	NM_018948.3	140	tTc/tc																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65321264	65321264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			835	156	431	0	ENST00000342505.4:c.1576C>A	p.Leu526Ile	p.L526I	ENST00000342505	NM_002227.2	526	Ctc/Atc																																													NEWRECORD																																		
VTCN1	79679	MSKCC	GRCh37	1	117695947	117695947	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			709	222	421	0	ENST00000369458.3:c.490G>T	p.Glu164Ter	p.E164*	ENST00000369458	NM_024626.3	164	Gag/Tag																																													NEWRECORD																																		
RFWD2	64326	MSKCC	GRCh37	1	176104185	176104185	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	131	330	0	ENST00000367669.3:c.929G>T	p.Ser310Ile	p.S310I	ENST00000367669	NM_022457.5	310	aGc/aTc																																													NEWRECORD																																		
PARP1	142	MSKCC	GRCh37	1	226570819	226570820	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			730	206	395	0	ENST00000366794.5:c.1076dup	p.Glu360ArgfsTer29	p.E360Rfs*29	ENST00000366794	NM_001618.3	359	cca/ccCa																																													NEWRECORD																																		
SMYD3	64754	MSKCC	GRCh37	1	245927413	245927413	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			784	235	438	0	ENST00000388985.4:c.1115A>G	p.Gln372Arg	p.Q372R	ENST00000388985		372	cAa/cGa																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8097779	8097779	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			895	291	556	0	ENST00000346208.3:c.161A>G	p.Asp54Gly	p.D54G	ENST00000346208		54	gAc/gGc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8100451	8100452	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			879	298	545	1	ENST00000346208.3:c.431dupG	p.His145ProfsTer158	p.H145Pfs*158	ENST00000346208		142	tcg/tcGg																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70405565	70405565	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			581	174	391	0	ENST00000373644.4:c.3079A>G	p.Thr1027Ala	p.T1027A	ENST00000373644	NM_030625.2	1027	Act/Gct																																													NEWRECORD																																		
INPPL1	3636	MSKCC	GRCh37	11	71939260	71939260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			798	286	433	0	ENST00000298229.2:c.209G>A	p.Arg70His	p.R70H	ENST00000298229	NM_001567.3	70	cGc/cAc																																													NEWRECORD																																		
PGR	5241	MSKCC	GRCh37	11	100999794	100999794	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			592	206	409	0	ENST00000325455.5:c.8A>C	p.Glu3Ala	p.E3A	ENST00000325455	NM_001202474.3	3	gAg/gCg																																													NEWRECORD																																		
SMARCD1	6602	MSKCC	GRCh37	12	50480010	50480010	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			804	248	439	1	ENST00000394963.4:c.249del	p.Asn84ThrfsTer79	p.N84Tfs*79	ENST00000394963	NM_003076.4	82	Ggg/gg																																													NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105241994	105241994	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			883	67	386	1	ENST00000349310.3:c.430C>A	p.Arg144Ser	p.R144S	ENST00000349310	NM_001014432.1	144	Cgc/Agc																																													NEWRECORD																																		
SPRED1	161742	MSKCC	GRCh37	15	38643525	38643525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			782	237	444	0	ENST00000299084.4:c.995G>A	p.Arg332His	p.R332H	ENST00000299084	NM_152594.2	332	cGt/cAt																																													NEWRECORD																																		
TP53BP1	7158	MSKCC	GRCh37	15	43712851	43712851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			902	346	537	0	ENST00000382044.4:c.4333G>A	p.Val1445Met	p.V1445M	ENST00000382044	NM_001141980.1	1445	Gtg/Atg																																													NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			795	322	456	0	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1226561	1226561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			904	308	544	2	ENST00000326873.7:c.1217C>T	p.Ala406Val	p.A406V	ENST00000326873	NM_000455.4	406	gCg/gTg																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10249233	10249233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			806	132	393	2	ENST00000340748.4:c.3949G>A	p.Ala1317Thr	p.A1317T	ENST00000340748		1317	Gcc/Acc																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10259582	10259582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	58	497	1	ENST00000340748.4:c.2650C>T	p.Pro884Ser	p.P884S	ENST00000340748		884	Cca/Tca																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15281361	15281362	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			672	231	493	0	ENST00000263388.2:c.4894dup	p.Glu1632GlyfsTer47	p.E1632Gfs*47	ENST00000263388	NM_000435.2	1632	gag/gGag																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17950351	17950351	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			917	278	506	0	ENST00000458235.1:c.1376A>G	p.Asp459Gly	p.D459G	ENST00000458235	NM_000215.3	459	gAt/gGt																																													NEWRECORD																																		
KMT2B	9757	MSKCC	GRCh37	19	36208928	36208928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			105	42	40	0	ENST00000222270.7:c.8C>T	p.Ala3Val	p.A3V	ENST00000222270	NM_014727.1	3	gCg/gTg																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42795105	42795105	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	194	567	0	ENST00000575354.2:c.2185T>C	p.Tyr729His	p.Y729H	ENST00000575354	NM_015125.3	729	Tat/Cat																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50912075	50912077	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	320	627	1	ENST00000440232.2:c.1812_1814del	p.Ser605del	p.S605del	ENST00000440232	NM_002691.3	603	ttCTCc/ttc																																													NEWRECORD																																		
SOS1	6654	MSKCC	GRCh37	2	39250209	39250209	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			674	211	570	0	ENST00000402219.2:c.1360G>T	p.Gly454Ter	p.G454*	ENST00000402219	NM_005633.3	454	Gga/Tga																																													NEWRECORD																																		
U2AF1	7307	MSKCC	GRCh37	21	44513298	44513298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	405	538	0	ENST00000291552.4:c.637G>A	p.Gly213Ser	p.G213S	ENST00000291552	NM_006758.2	213	Ggt/Agt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916730	178916730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			547	53	320	0	ENST00000263967.3:c.117G>T	p.Glu39Asp	p.E39D	ENST00000263967	NM_006218.2	39	gaG/gaT																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187630855	187630855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			761	256	450	0	ENST00000441802.2:c.127G>A	p.Val43Met	p.V43M	ENST00000441802	NM_005245.3	43	Gtg/Atg																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67522697	67522697	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			444	114	223	0	ENST00000274335.5:c.196del	p.Arg66GlyfsTer9	p.R66Gfs*9	ENST00000274335		65	gAa/ga																																													NEWRECORD																																		
CCND3	896	MSKCC	GRCh37	6	41905129	41905129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	365	255	0	ENST00000372991.4:c.418T>C	p.Trp140Arg	p.W140R	ENST00000372991	NM_001760.3	140	Tgg/Cgg																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151874826	151874826	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142788583		P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			390	132	230	1	ENST00000262189.6:c.7712G>A	p.Arg2571Gln	p.R2571Q	ENST00000262189	NM_170606.2	2571	cGg/cAg																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372065	55372065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			769	409	468	1	ENST00000297316.4:c.755G>A	p.Ser252Asn	p.S252N	ENST00000297316	NM_022454.3	252	aGc/aAc																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145740554	145740554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			890	275	477	0	ENST00000428558.2:c.1463C>T	p.Ala488Val	p.A488V	ENST00000428558	NM_004260.3	488	gCa/gTa																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135781380	135781380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			754	252	408	1	ENST00000298552.3:c.1585G>A	p.Ala529Thr	p.A529T	ENST00000298552	NM_001162426.1	529	Gcc/Acc																																													NEWRECORD																																		
RXRA	6256	MSKCC	GRCh37	9	137293682	137293682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			795	269	551	1	ENST00000481739.1:c.233C>T	p.Ser78Leu	p.S78L	ENST00000481739	NM_002957.4	78	tCg/tTg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139403372	139403372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			762	264	469	0	ENST00000277541.6:c.3121G>A	p.Gly1041Ser	p.G1041S	ENST00000277541	NM_017617.3	1041	Ggc/Agc																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39922945	39922945	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			256	249	195	0	ENST00000378444.4:c.3763G>T	p.Glu1255Ter	p.E1255*	ENST00000378444	NM_001123385.1	1255	Gag/Tag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0004923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	114	252	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0004923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	169	437	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44941830	44941831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	132	486	0	ENST00000377967.4:c.3160dupA	p.Arg1054LysfsTer5	p.R1054Kfs*5	ENST00000377967	NM_021140.2	1052	gaa/gAaa																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70332456	70332456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	106	424	0	ENST00000373644.4:c.361G>T	p.Val121Phe	p.V121F	ENST00000373644	NM_030625.2	121	Gtc/Ttc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0014275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	308	939	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	172	505	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0014275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	294	641	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591933	48591933	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	GT			P-0014275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	143	352	0	ENST00000342988.3:c.1096delinsGT	p.Gln366ValfsTer12	p.Q366Vfs*12	ENST00000342988	NM_005359.5	366	Caa/GTaa																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29553478	29553478	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	436	488	4	ENST00000358273.4:c.2033delC	p.Pro678ArgfsTer10	p.P678Rfs*10	ENST00000358273	NM_001042492.2	676	aCc/ac																																													NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	433	567	3	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7576910	7576910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	529	557	0	ENST00000269305.4:c.936delC	p.Ser313AlafsTer32	p.S313Afs*32	ENST00000269305	NM_001126112.2	312	acC/ac																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49434940	49434940	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	208	425	0	ENST00000301067.7:c.6613del	p.Ala2205ProfsTer59	p.A2205Pfs*59	ENST00000301067	NM_003482.3	2205	Gcc/cc																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43597792	43597793	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CG	CG	AC			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	148	478	0	ENST00000355710.3:c.340_341delinsAC	p.Arg114Thr	p.R114T	ENST00000355710	NM_020975.4	114	CGc/ACc																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108151824	108151824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200765255		P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	180	394	0	ENST00000278616.4:c.3505G>A	p.Glu1169Lys	p.E1169K	ENST00000278616	NM_000051.3	1169	Gaa/Aaa																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103510703	103510703	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	152	364	0	ENST00000355739.4:c.607G>T	p.Glu203Ter	p.E203*	ENST00000355739	NM_000123.3	203	Gaa/Taa																																													NEWRECORD																																		
NFKBIA	4792	MSKCC	GRCh37	14	35871748	35871748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	230	387	2	ENST00000216797.5:c.758C>T	p.Pro253Leu	p.P253L	ENST00000216797	NM_020529.2	253	cCc/cTc																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88678404	88678404	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	225	645	1	ENST00000360948.2:c.1132C>A	p.Leu378Ile	p.L378I	ENST00000360948	NM_001012338.2	378	Ctc/Atc																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88680792	88680792	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	189	450	1	ENST00000360948.2:c.465G>T	p.Leu155Phe	p.L155F	ENST00000360948	NM_001012338.2	155	ttG/ttT																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9858026	9858026	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	151	426	0	ENST00000330684.3:c.3375G>C	p.Glu1125Asp	p.E1125D	ENST00000330684	NM_001134407.1	1125	gaG/gaC																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	10273958	10273958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	285	676	1	ENST00000330684.3:c.311C>A	p.Thr104Lys	p.T104K	ENST00000330684	NM_001134407.1	104	aCg/aAg																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67650677	67650677	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	213	474	0	ENST00000264010.4:c.982G>T	p.Asp328Tyr	p.D328Y	ENST00000264010	NM_006565.3	328	Gac/Tac																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72831582	72831582	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	264	599	0	ENST00000268489.5:c.4999A>G	p.Asn1667Asp	p.N1667D	ENST00000268489	NM_006885.3	1667	Aat/Gat																																													NEWRECORD																																		
YES1	7525	MSKCC	GRCh37	18	732914	732914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	228	591	2	ENST00000314574.4:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000314574	NM_005433.3	448	cGg/cAg																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2210417	2210417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	257	489	0	ENST00000398665.3:c.1024C>T	p.Arg342Trp	p.R342W	ENST00000398665	NM_032482.2	342	Cgg/Tgg																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11123682	11123682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	269	491	0	ENST00000344626.4:c.2332G>A	p.Ala778Thr	p.A778T	ENST00000344626	NM_003072.3	778	Gcc/Acc																																													NEWRECORD																																		
CALR	811	MSKCC	GRCh37	19	13054605	13054607	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	214	358	1	ENST00000316448.5:c.1142_1144delAGG	p.Glu381del	p.E381del	ENST00000316448	NM_004343.3	378	GAG/-																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	26068368	26068369	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	141	364	0	ENST00000435504.4:c.121_122del	p.Glu41ArgfsTer26	p.E41Rfs*26	ENST00000435504		41	GAa/a																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48026911	48026912	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	117	259	0	ENST00000234420.5:c.1794dup	p.Gly599ArgfsTer8	p.G599Rfs*8	ENST00000234420	NM_000179.2	597	gaa/gAaa																																													NEWRECORD																																		
ERCC3	2071	MSKCC	GRCh37	2	128028968	128028971	+	frameshift_variant	Frame_Shift_Del	DEL	CCAT	CCAT	AAA			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	211	506	1	ENST00000285398.2:c.1886_1889delinsTTT	p.His629LeufsTer12	p.H629Lfs*12	ENST00000285398	NM_000122.1	629	cATGGt/cTTTt																																													NEWRECORD																																		
PMS1	5378	MSKCC	GRCh37	2	190728500	190728500	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs139932286		P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	141	416	2	ENST00000441310.2:c.1888C>T	p.Arg630Ter	p.R630*	ENST00000441310	NM_000534.4	630	Cga/Tga																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225360560	225360561	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	73	171	0	ENST00000264414.4:c.1830dup	p.Tyr611IlefsTer4	p.Y611Ifs*4	ENST00000264414	NM_003590.4	610	-/A																																													NEWRECORD																																		
MLH1	4292	MSKCC	GRCh37	3	37038115	37038115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	101	195	0	ENST00000231790.2:c.122A>G	p.Asp41Gly	p.D41G	ENST00000231790	NM_000249.3	41	gAt/gGt																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134851724	134851724	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	256	390	0	ENST00000398015.3:c.1130T>A	p.Val377Glu	p.V377E	ENST00000398015	NM_004441.4	377	gTg/gAg																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55964328	55964328	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	155	401	0	ENST00000263923.4:c.2485T>G	p.Phe829Val	p.F829V	ENST00000263923	NM_002253.2	829	Ttc/Gtc																																													NEWRECORD																																		
SDHA	6389	MSKCC	GRCh37	5	226092	226092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	185	414	1	ENST00000264932.6:c.551G>T	p.Gly184Val	p.G184V	ENST00000264932	NM_004168.2	184	gGg/gTg																																													NEWRECORD																																		
PLK2	10769	MSKCC	GRCh37	5	57753151	57753152	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	149	237	0	ENST00000274289.3:c.864_865del	p.Tyr289Ter	p.Y289*	ENST00000274289	NM_006622.3	288	acTTat/acat																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86670703	86670703	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	91	206	0	ENST00000274376.6:c.1984del	p.Thr662GlnfsTer16	p.T662Qfs*16	ENST00000274376	NM_002890.2	661	Aaa/aa																																													NEWRECORD																																		
HIST1H3G	8355	MSKCC	GRCh37	6	26271243	26271243	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	174	353	0	ENST00000305910.3:c.370G>T	p.Asp124Tyr	p.D124Y	ENST00000305910	NM_003534.2	124	Gac/Tac																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117663622	117663622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	146	447	0	ENST00000368508.3:c.4610C>T	p.Ser1537Leu	p.S1537L	ENST00000368508	NM_002944.2	1537	tCa/tTa																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106526608	106526608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	154	336	0	ENST00000359195.3:c.2901C>A	p.His967Gln	p.H967Q	ENST00000359195	NM_002649.2	967	caC/caA																																													NEWRECORD																																		
PREX2	80243	MSKCC	GRCh37	8	69002822	69002822	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	177	230	0	ENST00000288368.4:c.2122G>T	p.Ala708Ser	p.A708S	ENST00000288368	NM_024870.2	708	Gct/Tct																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8517944	8517944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	135	317	1	ENST00000356435.5:c.1447G>T	p.Val483Leu	p.V483L	ENST00000356435		483	Gtg/Ttg																																													NEWRECORD																																		
TEK	7010	MSKCC	GRCh37	9	27185544	27185545	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1262	228	563	0	ENST00000380036.4:c.1250dupC	p.Asp418Ter	p.D418*	ENST00000380036	NM_000459.3	415	ctc/ctCc																																													NEWRECORD																																		
RXRA	6256	MSKCC	GRCh37	9	137321073	137321073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	203	385	0	ENST00000481739.1:c.1030G>A	p.Ala344Thr	p.A344T	ENST00000481739	NM_002957.4	344	Gcc/Acc																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76855036	76855036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	121	385	0	ENST00000373344.5:c.5800G>T	p.Gly1934Trp	p.G1934W	ENST00000373344	NM_000489.3	1934	Ggg/Tgg																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76920253	76920253	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	143	331	0	ENST00000373344.5:c.3824T>C	p.Met1275Thr	p.M1275T	ENST00000373344	NM_000489.3	1275	aTg/aCg																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76952081	76952081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	121	385	1	ENST00000373344.5:c.354G>A	p.Met118Ile	p.M118I	ENST00000373344	NM_000489.3	118	atG/atA																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123224766	123224766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	181	514	0	ENST00000218089.9:c.3530G>A	p.Arg1177Lys	p.R1177K	ENST00000218089	NM_001042749.1	1177	aGa/aAa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	48	309	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	26	209	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0009254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	24	106	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																													NEWRECORD																																		
PIK3C3	5289	MSKCC	GRCh37	18	39623707	39623707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	51	320	0	ENST00000262039.4:c.2114G>A	p.Arg705Lys	p.R705K	ENST00000262039	NM_002647.2	705	aGa/aAa																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44950033	44950034	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	41	242	0	ENST00000377967.4:c.3803dup	p.Pro1269ThrfsTer22	p.P1269Tfs*22	ENST00000377967	NM_021140.2	1268	gta/gTta																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31021665	31021665	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	39	131	0	ENST00000375687.4:c.1664T>G	p.Val555Gly	p.V555G	ENST00000375687	NM_015338.5	555	gTt/gGt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7574023	7574024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	133	314	0	ENST00000269305.4:c.1003dup	p.Arg335ProfsTer2	p.R335Pfs*2	ENST00000269305	NM_001126112.2	335	cgt/cCgt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	492	332	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484596	57484596	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	171	224	0	ENST00000371085.3:c.680A>T	p.Gln227Leu	p.Q227L	ENST00000371085	NM_000516.4	227	cAg/cTg																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10602446	10602446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	582	421	0	ENST00000171111.5:c.1132G>T	p.Gly378Cys	p.G378C	ENST00000171111	NM_203500.1	378	Ggc/Tgc																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1293689	1293689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	218	250	0	ENST00000310581.5:c.1312C>A	p.Pro438Thr	p.P438T	ENST00000310581	NM_198253.2	438	Ccc/Acc																																													NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35861093	35861093	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	130	287	0	ENST00000303115.3:c.221+1G>T		p.X74_splice	ENST00000303115	NM_002185.3	74																																														NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35876155	35876155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	247	399	0	ENST00000303115.3:c.947C>A	p.Ala316Asp	p.A316D	ENST00000303115	NM_002185.3	316	gCt/gAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112090652	112090652	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	278	312	0	ENST00000257430.4:c.65A>G	p.Asn22Ser	p.N22S	ENST00000257430	NM_000038.5	22	aAt/aGt																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131923356	131923356	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	192	216	0	ENST00000265335.6:c.859A>G	p.Ser287Gly	p.S287G	ENST00000265335		287	Agt/Ggt																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128845624	128845624	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	456	264	0	ENST00000249373.3:c.920+1G>T		p.X307_splice	ENST00000249373	NM_005631.4	307																																														NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151933011	151933011	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	229	104	0	ENST00000262189.6:c.2660G>T	p.Gly887Val	p.G887V	ENST00000262189	NM_170606.2	887	gGg/gTg																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8375976	8375976	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	332	437	1	ENST00000356435.5:c.4621T>A	p.Cys1541Ser	p.C1541S	ENST00000356435		1541	Tgt/Agt																																													NEWRECORD																																		
PGR	5241	MSKCC	GRCh37	11	100912675	100912675	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1202	601	450	0	ENST00000325455.5:c.2646+1G>A		p.X882_splice	ENST00000325455	NM_001202474.3	882																																														NEWRECORD																																		
PGR	5241	MSKCC	GRCh37	11	100912834	100912834	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1112	634	412	0	ENST00000325455.5:c.2489-1G>A		p.X830_splice	ENST00000325455	NM_001202474.3	830																																														NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108141808	108141808	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	601	335	0	ENST00000278616.4:c.2856G>T	p.Lys952Asn	p.K952N	ENST00000278616	NM_000051.3	952	aaG/aaT																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49428063	49428063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	308	207	0	ENST00000301067.7:c.10527G>T	p.Gln3509His	p.Q3509H	ENST00000301067	NM_003482.3	3509	caG/caT																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49440131	49440131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	650	399	0	ENST00000301067.7:c.4495G>T	p.Gly1499Trp	p.G1499W	ENST00000301067	NM_003482.3	1499	Ggg/Tgg																																													NEWRECORD																																		
PTPN11	5781	MSKCC	GRCh37	12	112924309	112924309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1199	269	420	1	ENST00000351677.2:c.1255C>T	p.His419Tyr	p.H419Y	ENST00000351677	NM_002834.3	419	Cac/Tac																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95574713	95574713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	399	411	0	ENST00000343455.3:c.2384C>T	p.Pro795Leu	p.P795L	ENST00000343455	NM_177438.2	795	cCt/cTt																																													NEWRECORD																																		
NUP93	9688	MSKCC	GRCh37	16	56875705	56875705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	422	568	0	ENST00000308159.5:c.2309C>T	p.Ser770Leu	p.S770L	ENST00000308159	NM_014669.4	770	tCg/tTg																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81944246	81944246	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	798	587	0	ENST00000359376.3:c.1855G>T	p.Glu619Ter	p.E619*	ENST00000359376	NM_002661.3	619	Gag/Tag																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11138626	11138626	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	455	248	0	ENST00000344626.4:c.3382G>T	p.Gly1128Ter	p.G1128*	ENST00000344626	NM_003072.3	1128	Gga/Tga																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40944505	40944505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1156	307	401	0	ENST00000373198.4:c.1997C>T	p.Ala666Val	p.A666V	ENST00000373198	NM_133170.3	666	gCt/gTt																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44941975	44941975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	365	297	0	ENST00000377967.4:c.3225G>T	p.Arg1075Ser	p.R1075S	ENST00000377967	NM_021140.2	1075	agG/agT																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76764086	76764086	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	294	198	0	ENST00000373344.5:c.7222A>G	p.Ile2408Val	p.I2408V	ENST00000373344	NM_000489.3	2408	Ata/Gta																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212295744	212295745	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	601	373	0	ENST00000342788.4:c.2568dup	p.Val857CysfsTer16	p.V857Cfs*16	ENST00000342788	NM_005235.2	856	-/T																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49426884	49426885	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	479	341	0	ENST00000301067.7:c.11603_11604delinsTT	p.Gly3868Val	p.G3868V	ENST00000301067	NM_003482.3	3868	gGG/gTT																																													NEWRECORD																																		
DDR2	4921	MSKCC	GRCh37	1	162749952	162749952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001888-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	344	318	0	ENST00000367921.3:c.2484G>A	p.Met828Ile	p.M828I	ENST00000367921	NM_006182.2	828	atG/atA																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0001888-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			125	223	251	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0001888-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	275	273	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89692841	89692843	+	stop_gained	Nonsense_Mutation	ONP	GAC	GAC	TAA			P-0001888-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			57	61	99	0	ENST00000371953.3:c.325_327delinsTAA	p.Asp109Ter	p.D109*	ENST00000371953	NM_000314.4	109	GAC/TAA																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0014781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	170	422	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68863636	68863637	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	303	634	0	ENST00000261769.5:c.2376dup	p.Ser793GlufsTer14	p.S793Efs*14	ENST00000261769	NM_004360.3	792	atg/atGg																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16068294	16068295	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0014781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	14	45	0	ENST00000268712.3:c.616_617del	p.Gln206ThrfsTer4	p.Q206Tfs*4	ENST00000268712	NM_006311.3	206	CAa/a																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98211580	98211580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	169	550	1	ENST00000331920.6:c.3575G>A	p.Arg1192His	p.R1192H	ENST00000331920	NM_000264.3	1192	cGc/cAc																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39930252	39930252	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	204	575	1	ENST00000378444.4:c.3212T>C	p.Ile1071Thr	p.I1071T	ENST00000378444	NM_001123385.1	1071	aTt/aCt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175951	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002164-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	209	324	0	ENST00000257430.4:c.4660G>T	p.Glu1554Ter	p.E1554*	ENST00000257430	NM_000038.5	1554	Gaa/Taa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0002164-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			324	190	349	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002164-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			240	343	558	0	ENST00000269305.4:c.644G>A	p.Ser215Asn	p.S215N	ENST00000269305	NM_001126112.2	215	aGt/aAt																																													NEWRECORD																																		
INPP4A	3631	MSKCC	GRCh37	2	99170914	99170914	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002164-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			578	284	486	0	ENST00000074304.5:c.1543C>T	p.Arg515Ter	p.R515*	ENST00000074304	NM_001134224.1	515	Cga/Tga																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56152491	56152491	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002164-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	228	348	0	ENST00000399503.3:c.547C>T	p.Arg183Ter	p.R183*	ENST00000399503	NM_005921.1	183	Cga/Tga																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176696676	176696676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002164-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			526	335	535	0	ENST00000439151.2:c.5377G>A	p.Glu1793Lys	p.E1793K	ENST00000439151	NM_022455.4	1793	Gag/Aag																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176636951	176636952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002164-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			430	208	441	0	ENST00000439151.2:c.1554dup	p.Glu519Ter	p.E519*	ENST00000439151	NM_022455.4	517	-/T																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0009850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	202	470	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0009850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	115	309	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																													NEWRECORD																																		
ETV1	2115	MSKCC	GRCh37	7	14017064	14017064	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	110	388	0	ENST00000405192.2:c.223C>G	p.Gln75Glu	p.Q75E	ENST00000405192	NM_001163147.1	75	Cag/Gag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577566	7577567	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	307	402	1	ENST00000269305.4:c.714dup	p.Asn239Ter	p.N239*	ENST00000269305	NM_001126112.2	238	-/T																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134880957	134880957	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770406411		P-0009850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	173	364	2	ENST00000398015.3:c.1520G>A	p.Arg507His	p.R507H	ENST00000398015	NM_004441.4	507	cGt/cAt																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115117718	115117718	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0009850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	160	473	0	ENST00000257566.3:c.717G>C	p.Gln239His	p.Q239H	ENST00000257566	NM_016569.3	239	caG/caC																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115117765	115117765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	181	505	1	ENST00000257566.3:c.670C>A	p.Pro224Thr	p.P224T	ENST00000257566	NM_016569.3	224	Cca/Aca																																													NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31390225	31390225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	640	415	0	ENST00000328111.2:c.2180C>G	p.Ser727Cys	p.S727C	ENST00000328111	NM_006892.3	727	tCt/tGt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0006118-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			319	360	536	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																														NEWRECORD																																		
BMPR1A	657	MSKCC	GRCh37	10	88683246	88683246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006118-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			295	94	334	0	ENST00000372037.3:c.1456C>T	p.Arg486Trp	p.R486W	ENST00000372037	NM_004329.2	486	Cgg/Tgg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0006118-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			178	196	359	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56490356	56490356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006118-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			879	151	532	0	ENST00000267101.3:c.2125C>G	p.Leu709Val	p.L709V	ENST00000267101	NM_001982.3	709	Cta/Gta																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73349482	73349482	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006118-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			395	82	401	0	ENST00000377767.4:c.854G>C	p.Arg285Thr	p.R285T	ENST00000377767	NM_014953.3	285	aGa/aCa																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41256236	41256236	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006118-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			765	46	459	0	ENST00000357654.3:c.344C>G	p.Pro115Arg	p.P115R	ENST00000357654	NM_007294.3	115	cCt/cGt																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48575106	48575106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006118-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			293	125	494	0	ENST00000342988.3:c.300G>T	p.Arg100Ser	p.R100S	ENST00000342988	NM_005359.5	100	agG/agT																																													NEWRECORD																																		
TCF3	6929	MSKCC	GRCh37	19	1619127	1619127	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006118-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			415	117	430	0	ENST00000344749.5:c.1433C>G	p.Pro478Arg	p.P478R	ENST00000344749	NM_001136139.2	478	cCt/cGt																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17953275	17953301	+	inframe_deletion	In_Frame_Del	DEL	CTTGGCCATGAGCGAGTGCCGGTCTGC	CTTGGCCATGAGCGAGTGCCGGTCTGC	-			P-0006118-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			502	104	438	0	ENST00000458235.1:c.685_711del	p.Ala229_Lys237del	p.A229_K237del	ENST00000458235	NM_000215.3	229	GCAGACCGGCACTCGCTCATGGCCAAG/-																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32912563	32912564	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006118-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			341	550	713	0	ENST00000380152.3:c.4074dup	p.Thr1359TyrfsTer2	p.T1359Yfs*2	ENST00000380152		1357	-/T																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	101	320	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48934112	48934151	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	GAATCTCTAACTTTCTTTAAAAATGTACATTTTTTTTTCA	GAATCTCTAACTTTCTTTAAAAATGTACATTTTTTTTTCA	-			P-0012132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	17	165	0	ENST00000267163.4:c.608-40_608-1del		p.X203_splice	ENST00000267163	NM_000321.2	203																																														NEWRECORD																																		
MLH1	4292	MSKCC	GRCh37	3	37056029	37056029	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	65	453	0	ENST00000231790.2:c.784A>G	p.Ile262Val	p.I262V	ENST00000231790	NM_000249.3	262	Atc/Gtc																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115975	8115976	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	33	188	0	ENST00000346208.3:c.1323dup	p.Met442HisfsTer65	p.M442Hfs*65	ENST00000346208		441	gcc/gCcc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	186	424	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	277	306	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56184101	56184101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	363	441	0	ENST00000399503.3:c.4306G>A	p.Gly1436Ser	p.G1436S	ENST00000399503	NM_005921.1	1436	Ggc/Agc																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56160703	56160704	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	202	455	0	ENST00000399503.3:c.980dup	p.Leu328ProfsTer10	p.L328Pfs*10	ENST00000399503	NM_005921.1	326	tct/tcTt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	141	552	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8106074	8106075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0014730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	128	435	0	ENST00000346208.3:c.897_898dup	p.Leu300ProfsTer56	p.L300Pfs*56	ENST00000346208		298	-/CC																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115118851	115118851	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	105	347	0	ENST00000257566.3:c.490A>G	p.Lys164Glu	p.K164E	ENST00000257566	NM_016569.3	164	Aaa/Gaa																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56178474	56178475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	111	252	0	ENST00000399503.3:c.3449dup	p.Ser1151ValfsTer9	p.S1151Vfs*9	ENST00000399503	NM_005921.1	1149	-/A																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56184120	56184120	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	122	351	0	ENST00000399503.3:c.4325T>G	p.Met1442Arg	p.M1442R	ENST00000399503	NM_005921.1	1442	aTg/aGg																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259521	55259521	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	122	325	0	ENST00000275493.2:c.2579A>T	p.Lys860Ile	p.K860I	ENST00000275493	NM_005228.3	860	aAa/aTa																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061886	38061886	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	189	360	0	ENST00000250448.2:c.103A>T	p.Asn35Tyr	p.N35Y	ENST00000250448	NM_004496.3	35	Aac/Tac																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68846059	68846060	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGTTCAAGCTGCTGACCTTCAAGGTGAGGGGTTAAGCACAACAGC			P-0004523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	75	369	0	ENST00000261769.5:c.1031_1076dup	p.Thr360GlyfsTer5	p.T360Gfs*5	ENST00000261769	NM_004360.3	344	gtg/gTGGTTCAAGCTGCTGACCTTCAAGGTGAGGGGTTAAGCACAACAGCtg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540652		P-0001168-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			157	360	475	0	ENST00000269305.4:c.743G>C	p.Arg248Pro	p.R248P	ENST00000269305	NM_001126112.2	248	cGg/cCg																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78936338	78936338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001168-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1188	188	640	1	ENST00000306801.3:c.3770C>T	p.Thr1257Met	p.T1257M	ENST00000306801	NM_020761.2	1257	aCg/aTg																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717720	89717721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0001168-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	615	439	0	ENST00000371953.3:c.746_747insCT	p.Gly251ValfsTer6	p.G251Vfs*6	ENST00000371953	NM_000314.4	249	gtg/gTCtg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0006568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	283	757	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32914091	32914094	+	frameshift_variant	Frame_Shift_Del	DEL	ACAG	ACAG	-			P-0006568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	222	1284	0	ENST00000380152.3:c.5603_5606delACAG	p.Asp1868ValfsTer5	p.D1868Vfs*5	ENST00000380152		1867	ACAGac/ac																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66189912	66189912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	95	606	0	ENST00000273854.3:c.3034C>T	p.Leu1012Phe	p.L1012F	ENST00000273854	NM_004439.5	1012	Ctt/Ttt																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151856020	151856020	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	134	770	0	ENST00000262189.6:c.11598G>C	p.Lys3866Asn	p.K3866N	ENST00000262189	NM_170606.2	3866	aaG/aaC																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115114265	115114266	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0006568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	114	575	2	ENST00000257566.3:c.950_951dup	p.Thr318SerfsTer6	p.T318Sfs*6	ENST00000257566	NM_016569.3	317	-/TC																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0002423-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	103	280	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76952120	76952120	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002423-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			206	172	240	2	ENST00000373344.5:c.315A>C	p.Glu105Asp	p.E105D	ENST00000373344	NM_000489.3	105	gaA/gaC																																													NEWRECORD																																		
LATS1	9113	MSKCC	GRCh37	6	150023093	150023094	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002423-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	123	485	0	ENST00000253339.5:c.169dup	p.Met57AsnfsTer20	p.M57Nfs*20	ENST00000253339		57	atg/aAtg																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249014	55249015	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGT			P-0002423-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	634	310	1	ENST00000275493.2:c.2313_2314insGTC	p.Asn771_Pro772insVal	p.N771_P772insV	ENST00000275493	NM_005228.3	771	aac/aaCGTc																																													NEWRECORD																																		
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0005153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	257	398	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	35	368	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152382152	152382154	+	inframe_deletion	In_Frame_Del	DEL	TGG	TGG	-			P-0005153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	106	291	0	ENST00000206249.3:c.1265_1267del	p.Val422del	p.V422del	ENST00000206249	NM_000125.3	421	aTGGtg/atg																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	227	433	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																													NEWRECORD																																		
CXCR4	7852	MSKCC	GRCh37	2	136873020	136873020	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147198552		P-0005153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	222	887	1	ENST00000241393.3:c.478G>A	p.Val160Ile	p.V160I	ENST00000241393	NM_003467.2	160	Gtc/Atc																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212288883	212288883	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0005153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	86	253	0	ENST00000342788.4:c.2863A>T	p.Lys955Ter	p.K955*	ENST00000342788	NM_005235.2	955	Aaa/Taa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0014096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	70	709	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																													NEWRECORD																																		
SH2B3	10019	MSKCC	GRCh37	12	111856658	111856658	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	33	360	0	ENST00000341259.2:c.709C>A	p.Leu237Met	p.L237M	ENST00000341259	NM_005475.2	237	Ctg/Atg																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98242279	98242279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	50	565	1	ENST00000331920.6:c.1039G>T	p.Val347Phe	p.V347F	ENST00000331920	NM_000264.3	347	Gtc/Ttc																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139410498	139410520	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCTGGCACACTCGTCCACATC	GTGCTGGCACACTCGTCCACATC	-			P-0014096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	46	795	0	ENST00000277541.6:c.1582_1604del	p.Asp528ProfsTer34	p.D528Pfs*34	ENST00000277541	NM_017617.3	528	GATGTGGACGAGTGTGCCAGCACc/c																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48951122	48951128	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	GAAATTT	GAAATTT	TGTATAGGATACATCTTTAAA			P-0014096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	43	488	0	ENST00000267163.4:c.1284_1290delinsTGTATAGGATACATCTTTAAA	p.Glu428AspfsTer3	p.E428Dfs*3	ENST00000267163	NM_000321.2	428	gaGAAATTT/gaTGTATAGGATACATCTTTAAA																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89156968	89156968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	179	308	1	ENST00000336596.2:c.70C>A	p.Pro24Thr	p.P24T	ENST00000336596	NM_005233.5	24	Ccg/Acg																																													NEWRECORD																																		
PGR	5241	MSKCC	GRCh37	11	100999711	100999711	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	234	587	0	ENST00000325455.5:c.91C>A	p.Pro31Thr	p.P31T	ENST00000325455	NM_001202474.3	31	Cca/Aca																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0007999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	86	356	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0007999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	176	433	2	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72829889	72829889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1217	263	698	3	ENST00000268489.5:c.6692C>T	p.Pro2231Leu	p.P2231L	ENST00000268489	NM_006885.3	2231	cCg/cTg																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29670066	29670066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	176	507	0	ENST00000358273.4:c.7102G>A	p.Glu2368Lys	p.E2368K	ENST00000358273	NM_001042492.2	2368	Gag/Aag																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50920463	50920463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	127	413	0	ENST00000440232.2:c.3155C>G	p.Ser1052Trp	p.S1052W	ENST00000440232	NM_002691.3	1052	tCg/tGg																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70356741	70356741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1372	81	560	0	ENST00000374080.3:c.5413G>T	p.Gly1805Cys	p.G1805C	ENST00000374080		1805	Ggc/Tgc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916929	178916937	+	inframe_deletion	In_Frame_Del	DEL	GGCAACCGT	GGCAACCGT	-			P-0007999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	163	696	0	ENST00000263967.3:c.317_325delGCAACCGTG	p.Gly106_Arg108del	p.G106_R108del	ENST00000263967	NM_006218.2	106	GGCAACCGT/-																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0007999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	78	205	0	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68835700	68835700	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1132	221	485	0	ENST00000261769.5:c.293del	p.Phe98SerfsTer19	p.F98Sfs*19	ENST00000261769	NM_004360.3	97	caT/ca																																													NEWRECORD																																		
ERRFI1	54206	MSKCC	GRCh37	1	8074217	8074217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1436	258	1172	4	ENST00000377482.5:c.442C>T	p.Arg148Trp	p.R148W	ENST00000377482	NM_018948.3	148	Cgg/Tgg																																													NEWRECORD																																		
BCL2L11	10018	MSKCC	GRCh37	2	111881363	111881363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			678	309	561	2	ENST00000393256.3:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000393256	NM_006538.4	14	cGa/cAa																																													NEWRECORD																																		
ACVR1	90	MSKCC	GRCh37	2	158627002	158627002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	247	944	0	ENST00000263640.3:c.668G>T	p.Trp223Leu	p.W223L	ENST00000263640	NM_001105.4	223	tGg/tTg																																													NEWRECORD																																		
MLH1	4292	MSKCC	GRCh37	3	37042536	37042536	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			669	324	658	0	ENST00000231790.2:c.298C>T	p.Arg100Ter	p.R100*	ENST00000231790	NM_000249.3	100	Cga/Tga																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			704	146	427	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106196838	106196838	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			737	124	527	0	ENST00000380013.4:c.5171A>G	p.Tyr1724Cys	p.Y1724C	ENST00000380013	NM_001127208.2	1724	tAt/tGt																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143081567	143081567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			743	167	597	0	ENST00000262992.4:c.1507G>A	p.Val503Met	p.V503M	ENST00000262992	NM_001101669.1	503	Gtg/Atg																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187519219	187519219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			766	55	556	1	ENST00000441802.2:c.12164C>A	p.Pro4055Gln	p.P4055Q	ENST00000441802	NM_005245.3	4055	cCg/cAg																																													NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86629103	86629103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753769946		P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			658	107	475	0	ENST00000274376.6:c.848G>A	p.Arg283His	p.R283H	ENST00000274376	NM_002890.2	283	cGt/cAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			598	126	421	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																													NEWRECORD																																		
RAC1	5879	MSKCC	GRCh37	7	6431646	6431646	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			543	112	377	0	ENST00000356142.4:c.199T>A	p.Leu67Ile	p.L67I	ENST00000356142	NM_018890.3	67	Tta/Ata																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151860143	151860143	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			748	140	538	1	ENST00000262189.6:c.10519C>T	p.Arg3507Ter	p.R3507*	ENST00000262189	NM_170606.2	3507	Cga/Tga																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98209340	98209340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			723	150	516	1	ENST00000331920.6:c.4198G>T	p.Gly1400Cys	p.G1400C	ENST00000331920	NM_000264.3	1400	Ggc/Tgc																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98238357	98238357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			492	203	512	1	ENST00000331920.6:c.1687G>A	p.Ala563Thr	p.A563T	ENST00000331920	NM_000264.3	563	Gcg/Acg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139395218	139395218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			611	130	523	1	ENST00000277541.6:c.5720C>T	p.Pro1907Leu	p.P1907L	ENST00000277541	NM_017617.3	1907	cCg/cTg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139396823	139396823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			399	119	386	1	ENST00000277541.6:c.5285G>A	p.Arg1762Gln	p.R1762Q	ENST00000277541	NM_017617.3	1762	cGg/cAg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139399156	139399156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			394	83	403	0	ENST00000277541.6:c.4987C>T	p.Arg1663Trp	p.R1663W	ENST00000277541	NM_017617.3	1663	Cgg/Tgg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139405696	139405696	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			720	62	583	0	ENST00000277541.6:c.2495C>A	p.Pro832Gln	p.P832Q	ENST00000277541	NM_017617.3	832	cCg/cAg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108115685	108115685	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			500	102	383	0	ENST00000278616.4:c.833T>A	p.Val278Asp	p.V278D	ENST00000278616	NM_000051.3	278	gTc/gAc																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118392801	118392801	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			697	137	542	0	ENST00000534358.1:c.11833T>C	p.Tyr3945His	p.Y3945H	ENST00000534358	NM_005933.3	3945	Tac/Cac																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			525	258	485	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56474086	56474086	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			568	38	492	0	ENST00000267101.3:c.2T>C	p.Met1?	p.M1?	ENST00000267101	NM_001982.3	1	aTg/aCg																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56487277	56487277	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1035001455		P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			377	174	327	0	ENST00000267101.3:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000267101	NM_001982.3	475	Cgg/Tgg																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115110073	115110073	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			305	70	297	0	ENST00000257566.3:c.1805C>A	p.Pro602His	p.P602H	ENST00000257566	NM_016569.3	602	cCt/cAt																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32906954	32906954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			601	63	260	0	ENST00000380152.3:c.1339C>T	p.Pro447Ser	p.P447S	ENST00000380152		447	Cca/Tca																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32937368	32937368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			768	125	394	1	ENST00000380152.3:c.8029G>A	p.Glu2677Lys	p.E2677K	ENST00000380152		2677	Gaa/Aaa																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110434595	110434595	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			483	67	301	0	ENST00000375856.3:c.3806A>C	p.Gln1269Pro	p.Q1269P	ENST00000375856	NM_003749.2	1269	cAg/cCg																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42041041	42041041	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1246	242	1037	0	ENST00000219905.7:c.5419C>T	p.Gln1807Ter	p.Q1807*	ENST00000219905	NM_001164273.1	1807	Cag/Tag																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003812	45003812	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			572	262	419	0	ENST00000558401.1:c.67+1G>A		p.X23_splice	ENST00000558401	NM_004048.2	23																																														NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88727490	88727490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			426	254	446	2	ENST00000360948.2:c.289G>A	p.Val97Met	p.V97M	ENST00000360948	NM_001012338.2	97	Gtg/Atg																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3842097	3842097	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			510	109	349	0	ENST00000262367.5:c.1217-2A>G		p.X406_splice	ENST00000262367	NM_004380.2	406																																														NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89346436	89346436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			849	193	924	3	ENST00000301030.4:c.6514G>A	p.Gly2172Arg	p.G2172R	ENST00000301030	NM_001256183.1	2172	Ggg/Agg																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41219713	41219713	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			625	66	436	0	ENST00000357654.3:c.4987-1G>T		p.X1663_splice	ENST00000357654	NM_007294.3	1663																																														NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58677977	58677977	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			373	69	343	0	ENST00000305921.3:c.202C>A	p.Pro68Thr	p.P68T	ENST00000305921	NM_003620.3	68	Cca/Aca																																													NEWRECORD																																		
BCL2	596	MSKCC	GRCh37	18	60985514	60985514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			744	140	542	4	ENST00000333681.4:c.386G>A	p.Arg129His	p.R129H	ENST00000333681		129	cGc/cAc																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11098446	11098446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			367	80	385	1	ENST00000344626.4:c.964G>A	p.Ala322Thr	p.A322T	ENST00000344626	NM_003072.3	322	Gcc/Acc																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15302975	15302975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			252	62	262	0	ENST00000263388.2:c.475G>A	p.Val159Met	p.V159M	ENST00000263388	NM_000435.2	159	Gtg/Atg																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17955130	17955130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			425	122	410	0	ENST00000458235.1:c.97C>T	p.Arg33Trp	p.R33W	ENST00000458235	NM_000215.3	33	Cgg/Tgg																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44929472	44929472	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			553	271	469	2	ENST00000377967.4:c.2572G>T	p.Gly858Trp	p.G858W	ENST00000377967	NM_021140.2	858	Ggg/Tgg																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			413	231	570	1	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			508	109	457	1	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																													NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23647028	23647028	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			792	133	565	0	ENST00000261584.4:c.839del	p.Asn280ThrfsTer8	p.N280Tfs*8	ENST00000261584	NM_024675.3	280	aAc/ac																																													NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			509	74	549	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			535	106	443	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	180	648	2	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023903	27023904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			251	24	185	0	ENST00000324856.7:c.1015dup	p.Ala339GlyfsTer61	p.A339Gfs*61	ENST00000324856	NM_006015.4	337	tgg/tGgg																																													NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156846307	156846308	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			683	130	615	2	ENST00000524377.1:c.1753dup	p.Leu585ProfsTer6	p.L585Pfs*6	ENST00000524377	NM_002529.3	583	cgc/cgCc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			424	73	307	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5238958	5238958	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			356	61	380	0	ENST00000357368.4:c.1821delC	p.Val608TrpfsTer30	p.V608Wfs*30	ENST00000357368	NM_002850.3	607	ccC/cc																																													NEWRECORD																																		
CCND3	896	MSKCC	GRCh37	6	41903745	41903746	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1017	128	623	1	ENST00000372991.4:c.811dupC	p.Arg271ProfsTer53	p.R271Pfs*53	ENST00000372991	NM_001760.3	271	cgg/cCgg																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39923086	39923087	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			396	189	459	0	ENST00000378444.4:c.3621dup	p.Gln1208ThrfsTer8	p.Q1208Tfs*8	ENST00000378444	NM_001123385.1	1207	-/A																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47161939	47161939	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			591	93	411	0	ENST00000409792.3:c.4187del	p.Asn1396MetfsTer16	p.N1396Mfs*16	ENST00000409792	NM_014159.6	1396	aAt/at																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32907283	32907283	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			954	135	448	0	ENST00000380152.3:c.1670del	p.Leu557Ter	p.L557*	ENST00000380152		556	aaT/aa																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41215361	41215361	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			824	145	625	0	ENST00000357654.3:c.5182del	p.Met1728CysfsTer2	p.M1728Cfs*2	ENST00000357654	NM_007294.3	1728	Atg/tg																																													NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58740623	58740624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs763475304		P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1367	241	1033	2	ENST00000305921.3:c.1535dup	p.Asn512LysfsTer16	p.N512Kfs*16	ENST00000305921	NM_003620.3	510	caa/cAaa																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157099468	157099470	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-	rs1429292576		P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			765	118	502	0	ENST00000346085.5:c.413_415del	p.Asn138del	p.N138del	ENST00000346085	NM_020732.3	135	tcCAAc/tcc																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42796882	42796883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			670	124	727	0	ENST00000575354.2:c.3347dupC	p.Ser1117LysfsTer34	p.S1117Kfs*34	ENST00000575354	NM_015125.3	1114	gcc/gCcc																																													NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106156320	106156321	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			559	108	380	0	ENST00000380013.4:c.1226dup	p.Pro410SerfsTer33	p.P410Sfs*33	ENST00000380013	NM_001127208.2	407	-/C																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48033792	48033795	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TAAC	TAAC	-			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			529	91	367	0	ENST00000234420.5:c.4001+12_4001+15delACTA		p.X1334_splice	ENST00000234420	NM_000179.2	1334																																														NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0006861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	127	284	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925316	114925317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769592153		P-0006861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	543	322	10	ENST00000543371.1:c.1403dup	p.Cys469ValfsTer8	p.C469Vfs*8	ENST00000543371	NM_001198531.1	465	aga/agAa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112170862	112170862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	85	278	0	ENST00000257430.4:c.1958G>A	p.Arg653Lys	p.R653K	ENST00000257430	NM_000038.5	653	aGg/aAg																																													NEWRECORD																																		
STAG2	10735	MSKCC	GRCh37	X	123197716	123197716	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	141	342	2	ENST00000218089.9:c.1840C>T	p.Arg614Ter	p.R614*	ENST00000218089	NM_001042749.1	614	Cga/Tga																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63554725	63554726	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0006861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	135	133	0	ENST00000307078.5:c.13_14delAT	p.Met5ValfsTer14	p.M5Vfs*14	ENST00000307078	NM_004655.3	5	ATg/g																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133233793	133233794	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	346	354	0	ENST00000320574.5:c.3510dup	p.Leu1171ThrfsTer6	p.L1171Tfs*6	ENST00000320574	NM_006231.2	1170	-/A																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175363	112175366	+	stop_gained	Nonsense_Mutation	ONP	GCGA	GCGA	TCGT			P-0006861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	80	188	0	ENST00000257430.4:c.4072_4075delinsTCGT	p.Ala1358_Lys1359delinsSerTer	p.A1358_K1359delinsS*	ENST00000257430	NM_000038.5	1358	GCGAaa/TCGTaa																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003002-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	258	548	0	ENST00000346208.3:c.1220_1221insA	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcAg																																													NEWRECORD																																		
PAX5	5079	MSKCC	GRCh37	9	37015010	37015010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003002-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			471	62	457	0	ENST00000358127.4:c.394G>A	p.Val132Ile	p.V132I	ENST00000358127	NM_001280556.1	132	Gtc/Atc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0006720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	33	402	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0006720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	30	386	1	ENST00000269571.5:c.2331_2339dupGGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																													NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36252884	36252885	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	339	224	0	ENST00000300305.3:c.477dup	p.Asp160Ter	p.D160*	ENST00000300305		159	-/T																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			496	313	504	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520017		P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			342	379	508	1	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3788651	3788651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			564	107	391	0	ENST00000262367.5:c.4303G>A	p.Asp1435Asn	p.D1435N	ENST00000262367	NM_004380.2	1435	Gat/Aat																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143045784	143045784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			349	273	427	0	ENST00000262992.4:c.1850G>T	p.Cys617Phe	p.C617F	ENST00000262992	NM_001101669.1	617	tGt/tTt																																													NEWRECORD																																		
FGFR1	2260	MSKCC	GRCh37	8	38287220	38287220	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	474	493	0	ENST00000425967.3:c.437A>T	p.Tyr146Phe	p.Y146F	ENST00000425967	NM_001174067.1	146	tAc/tTc																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108158420	108158420	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	204	316	0	ENST00000278616.4:c.4087A>T	p.Thr1363Ser	p.T1363S	ENST00000278616	NM_000051.3	1363	Act/Tct																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67457264	67457264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			313	253	339	0	ENST00000327367.4:c.238C>T	p.Arg80Trp	p.R80W	ENST00000327367	NM_005902.3	80	Cgg/Tgg																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11143985	11143985	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	297	417	0	ENST00000344626.4:c.3566G>T	p.Arg1189Leu	p.R1189L	ENST00000344626	NM_003072.3	1189	cGa/cTa																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17940951	17940951	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	32	409	0	ENST00000458235.1:c.3173A>G	p.Gln1058Arg	p.Q1058R	ENST00000458235	NM_000215.3	1058	cAg/cGg																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40770610	40770610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			342	205	385	0	ENST00000373198.4:c.2772C>A	p.Asp924Glu	p.D924E	ENST00000373198	NM_133170.3	924	gaC/gaA																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53222235	53222235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	114	418	0	ENST00000375401.3:c.4597A>G	p.Thr1533Ala	p.T1533A	ENST00000375401	NM_004187.3	1533	Act/Gct																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	49030464	49030465	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTCA			P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	206	338	0	ENST00000267163.4:c.1940_1944dup	p.Leu649PhefsTer11	p.L649Ffs*11	ENST00000267163	NM_000321.2	647	ctt/cTTTCAtt																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45374988	45374989	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			385	238	403	0	ENST00000262160.6:c.854_855delinsTT	p.Arg285Ile	p.R285I	ENST00000262160	NM_005901.5	285	aGG/aTT																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0004736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	73	338	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67591085	67591085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	72	388	0	ENST00000274335.5:c.1678G>T	p.Asp560Tyr	p.D560Y	ENST00000274335		560	Gac/Tac																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27057991	27057992	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0004736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	28	345	0	ENST00000324856.7:c.1700_1701dup	p.Pro568SerfsTer52	p.P568Sfs*52	ENST00000324856	NM_006015.4	567	cag/cAGag																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105693	27105694	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0004736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	31	489	0	ENST00000324856.7:c.5305_5306del	p.Leu1769ArgfsTer3	p.L1769Rfs*3	ENST00000324856	NM_006015.4	1768	ctTCta/ctta																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112170777	112170780	+	frameshift_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0004736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	48	557	0	ENST00000257430.4:c.1875_1878del	p.Asn627LeufsTer2	p.N627Lfs*2	ENST00000257430	NM_000038.5	625	CAGAca/ca																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	39	500	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0014070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	25	612	3	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32914939	32914940	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	39	983	1	ENST00000380152.3:c.6450dup	p.Val2151SerfsTer25	p.V2151Sfs*25	ENST00000380152		2149	-/A																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212248651	212248651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	20	630	0	ENST00000342788.4:c.3616C>A	p.Pro1206Thr	p.P1206T	ENST00000342788	NM_005235.2	1206	Cca/Aca																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52598172	52598172	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	28	655	0	ENST00000394830.3:c.3694del	p.Cys1232ValfsTer12	p.C1232Vfs*12	ENST00000394830	NM_018313.4	1232	Tgt/gt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0000511-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	85	246	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000511-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			499	63	177	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0000511-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			821	196	289	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49433982	49433982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000511-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			513	68	217	0	ENST00000301067.7:c.7571C>T	p.Thr2524Met	p.T2524M	ENST00000301067	NM_003482.3	2524	aCg/aTg																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0008935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	49	465	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																													NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115251172	115251172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	87	510	0	ENST00000369535.4:c.554C>T	p.Pro185Leu	p.P185L	ENST00000369535	NM_002524.4	185	cCa/cTa																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38945793	38945793	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	18	342	0	ENST00000357387.3:c.4433A>G	p.Asn1478Ser	p.N1478S	ENST00000357387	NM_152756.3	1478	aAt/aGt																																													NEWRECORD																																		
PARK2	5071	MSKCC	GRCh37	6	162394431	162394431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	42	436	0	ENST00000366898.1:c.637G>A	p.Gly213Arg	p.G213R	ENST00000366898	NM_004562.2	213	Gga/Aga																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81335053	81335053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	38	313	0	ENST00000222390.5:c.1774G>T	p.Asp592Tyr	p.D592Y	ENST00000222390	NM_000601.4	592	Gat/Tat																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110437037	110437037	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	22	30	0	ENST00000375856.3:c.1364G>T	p.Gly455Val	p.G455V	ENST00000375856	NM_003749.2	455	gGc/gTc																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9943776	9943776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	54	254	1	ENST00000330684.3:c.1165G>A	p.Val389Met	p.V389M	ENST00000330684	NM_001134407.1	389	Gtg/Atg																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89839741	89839741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	83	525	0	ENST00000389301.3:c.1952G>T	p.Gly651Val	p.G651V	ENST00000389301	NM_000135.2	651	gGa/gTa																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7126606	7126606	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	115	358	0	ENST00000302850.5:c.3002G>T	p.Ser1001Ile	p.S1001I	ENST00000302850	NM_000208.2	1001	aGt/aTt																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57470699	57470699	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	103	325	0	ENST00000371085.3:c.172A>G	p.Lys58Glu	p.K58E	ENST00000371085	NM_000516.4	58	Aag/Gag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AA			P-0008935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	146	492	0	ENST00000269305.4:c.880delinsTT	p.Glu294LeufsTer12	p.E294Lfs*12	ENST00000269305	NM_001126112.2	294	Gag/TTag																																													NEWRECORD																																		
INPP4A	3631	MSKCC	GRCh37	2	99154374	99154374	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	74	363	1	ENST00000074304.5:c.516G>T	p.Gln172His	p.Q172H	ENST00000074304	NM_001134224.1	172	caG/caT																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	247	196	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
PHOX2B	8929	MSKCC	GRCh37	4	41748240	41748240	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	84	432	0	ENST00000226382.2:c.529G>A	p.Asp177Asn	p.D177N	ENST00000226382	NM_003924.3	177	Gac/Aac																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55129887	55129887	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	145	488	0	ENST00000257290.5:c.421G>C	p.Glu141Gln	p.E141Q	ENST00000257290	NM_006206.4	141	Gag/Cag																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187530453	187530453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	64	309	0	ENST00000441802.2:c.10090G>A	p.Gly3364Arg	p.G3364R	ENST00000441802	NM_005245.3	3364	Gga/Aga																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151849867	151849867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	54	300	1	ENST00000262189.6:c.12449G>A	p.Gly4150Glu	p.G4150E	ENST00000262189	NM_170606.2	4150	gGa/gAa																																													NEWRECORD																																		
FGFR1	2260	MSKCC	GRCh37	8	38283765	38283765	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	47	305	0	ENST00000425967.3:c.715-2A>C		p.X239_splice	ENST00000425967	NM_001174067.1	239																																														NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70405851	70405851	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	216	471	0	ENST00000373644.4:c.3365C>A	p.Thr1122Lys	p.T1122K	ENST00000373644	NM_030625.2	1122	aCa/aAa																																													NEWRECORD																																		
BIRC3	330	MSKCC	GRCh37	11	102195866	102195866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	189	649	2	ENST00000263464.3:c.626G>T	p.Gly209Val	p.G209V	ENST00000263464	NM_001165.4	209	gGt/gTt																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118375222	118375222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	69	372	1	ENST00000534358.1:c.8615C>T	p.Ser2872Leu	p.S2872L	ENST00000534358	NM_005933.3	2872	tCa/tTa																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95566158	95566158	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	45	292	0	ENST00000343455.3:c.4165C>G	p.Gln1389Glu	p.Q1389E	ENST00000343455	NM_177438.2	1389	Caa/Gaa																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42000025	42000025	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1223	192	647	0	ENST00000219905.7:c.2288G>A	p.Trp763Ter	p.W763*	ENST00000219905	NM_001164273.1	763	tGg/tAg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578531	7578531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	112	318	0	ENST00000269305.4:c.399G>T	p.Met133Ile	p.M133I	ENST00000269305	NM_001126112.2	133	atG/atT																																													NEWRECORD																																		
SRSF2	6427	MSKCC	GRCh37	17	74733038	74733038	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	202	444	0	ENST00000359995.5:c.205G>C	p.Glu69Gln	p.E69Q	ENST00000359995	NM_001195427.1	69	Gag/Cag																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2208953	2208953	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	104	463	0	ENST00000398665.3:c.983G>T	p.Ser328Ile	p.S328I	ENST00000398665	NM_032482.2	328	aGt/aTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578526	7578527	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	109	319	0	ENST00000269305.4:c.403dupT	p.Cys135LeufsTer14	p.C135Lfs*14	ENST00000269305	NM_001126112.2	135	tgc/tTgc																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971180	21971180	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	27	74	0	ENST00000304494.5:c.178delG	p.Ala60ArgfsTer86	p.A60Rfs*86	ENST00000304494	NM_000077.4	60	Gcg/cg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	85	302	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0005813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	435	579	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0005813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	276	526	1	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49445190	49445216	+	inframe_deletion	In_Frame_Del	DEL	GGCTCCTCAGGCCGGGGGGACAGGTGC	GGCTCCTCAGGCCGGGGGGACAGGTGC	-			P-0005813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	81	390	1	ENST00000301067.7:c.2250_2276delGCACCTGTCCCCCCGGCCTGAGGAGCC	p.Arg755_Pro763del	p.R755_P763del	ENST00000301067	NM_003482.3	750	ccGCACCTGTCCCCCCGGCCTGAGGAGCCa/cca																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	49039377	49039378	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCCTTACAAGTTTCCTAGTTC			P-0005813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	308	685	0	ENST00000267163.4:c.2363_2384dup	p.Arg798GlnfsTer4	p.R798Qfs*4	ENST00000267163	NM_000321.2	788	agc/aGCCCTTACAAGTTTCCTAGTTCgc																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64575521	64575521	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	411	810	2	ENST00000337652.1:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000337652	NM_130803.2	171	Cag/Tag																																													NEWRECORD																																		
DAXX	1616	MSKCC	GRCh37	6	33286531	33286532	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	103	448	0	ENST00000374542.5:c.2211dup	p.Asp738ArgfsTer3	p.D738Rfs*3	ENST00000374542	NM_001141970.1	737	-/A																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			624	198	540	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			434	85	291	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																													NEWRECORD																																		
MEF2B	100271849	MSKCC	GRCh37	19	19256769	19256769	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			154	38	264	0	ENST00000162023.5:c.944del	p.Pro315GlnfsTer?	p.P315Qfs*?	ENST00000162023		315	cCa/ca																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27057814	27057814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			681	133	781	0	ENST00000324856.7:c.1522C>T	p.Pro508Ser	p.P508S	ENST00000324856	NM_006015.4	508	Cca/Tca																																													NEWRECORD																																		
MPL	4352	MSKCC	GRCh37	1	43818383	43818383	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			531	103	566	0	ENST00000372470.3:c.1848C>A	p.Cys616Ter	p.C616*	ENST00000372470	NM_005373.2	616	tgC/tgA																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212251578	212251578	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			601	135	412	0	ENST00000342788.4:c.3481G>T	p.Glu1161Ter	p.E1161*	ENST00000342788	NM_005235.2	1161	Gaa/Taa																																													NEWRECORD																																		
GSK3B	2932	MSKCC	GRCh37	3	119545684	119545684	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141519181		P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			582	105	404	0	ENST00000316626.5:c.1253G>A	p.Arg418His	p.R418H	ENST00000316626		418	cGt/cAt																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66213843	66213843	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			737	147	802	0	ENST00000273854.3:c.2587A>T	p.Ser863Cys	p.S863C	ENST00000273854	NM_004439.5	863	Agt/Tgt																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157099312	157099312	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	58	237	0	ENST00000346085.5:c.249G>C	p.Gln83His	p.Q83H	ENST00000346085	NM_020732.3	83	caG/caC																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249145	55249145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			467	155	572	0	ENST00000275493.2:c.2443C>T	p.Leu815Phe	p.L815F	ENST00000275493	NM_005228.3	815	Ctc/Ttc																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116371903	116371903	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs544274181		P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			632	238	423	0	ENST00000397752.3:c.1382G>A	p.Arg461His	p.R461H	ENST00000397752	NM_000245.2	461	cGc/cAc																																													NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151845391	151845391	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			551	163	485	1	ENST00000262189.6:c.13621C>T	p.Arg4541Ter	p.R4541*	ENST00000262189	NM_170606.2	4541	Cga/Tga																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145737591	145737591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			245	99	544	0	ENST00000428558.2:c.3172C>T	p.Arg1058Cys	p.R1058C	ENST00000428558	NM_004260.3	1058	Cgt/Tgt																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98241289	98241289	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			524	109	592	0	ENST00000331920.6:c.1208A>G	p.Tyr403Cys	p.Y403C	ENST00000331920	NM_000264.3	403	tAt/tGt																																													NEWRECORD																																		
TGFBR1	7046	MSKCC	GRCh37	9	101910055	101910055	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			605	126	433	0	ENST00000374994.4:c.1375C>T	p.Gln459Ter	p.Q459*	ENST00000374994	NM_004612.2	459	Cag/Tag																																													NEWRECORD																																		
FGF4	2249	MSKCC	GRCh37	11	69589720	69589720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			35	10	30	0	ENST00000168712.1:c.133C>T	p.Arg45Cys	p.R45C	ENST00000168712	NM_002007.2	45	Cgc/Tgc																																													NEWRECORD																																		
CDKN1B	1027	MSKCC	GRCh37	12	12871787	12871787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			777	174	303	0	ENST00000228872.4:c.504C>A	p.Asn168Lys	p.N168K	ENST00000228872	NM_004064.3	168	aaC/aaA																																													NEWRECORD																																		
H3F3C	440093	MSKCC	GRCh37	12	31944982	31944982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	68	348	0	ENST00000340398.3:c.119G>A	p.Arg40His	p.R40H	ENST00000340398	NM_001013699.2	40	cGc/cAc																																													NEWRECORD																																		
ERCC4	2072	MSKCC	GRCh37	16	14041554	14041554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			600	98	485	1	ENST00000311895.7:c.2101C>T	p.Arg701Cys	p.R701C	ENST00000311895	NM_005236.2	701	Cgt/Tgt																																													NEWRECORD																																		
RAD51D	5892	MSKCC	GRCh37	17	33428326	33428326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	93	493	0	ENST00000335858.7:c.461G>A	p.Arg154His	p.R154H	ENST00000335858	NM_133629.2	154	cGc/cAc																																													NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7128960	7128960	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139944962		P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			287	60	380	0	ENST00000302850.5:c.2848G>A	p.Val950Ile	p.V950I	ENST00000302850	NM_000208.2	950	Gtc/Atc																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11145710	11145710	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			257	77	543	0	ENST00000344626.4:c.4072A>G	p.Thr1358Ala	p.T1358A	ENST00000344626	NM_003072.3	1358	Acc/Gcc																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15349660	15349660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			252	18	327	0	ENST00000263377.2:c.3914C>T	p.Ala1305Val	p.A1305V	ENST00000263377	NM_058243.2	1305	gCt/gTt																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42794047	42794047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	65	469	1	ENST00000575354.2:c.1408C>T	p.Arg470Trp	p.R470W	ENST00000575354	NM_015125.3	470	Cgg/Tgg																																													NEWRECORD																																		
ERCC2	2068	MSKCC	GRCh37	19	45860886	45860886	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	28	595	1	ENST00000391945.4:c.1307+2T>C		p.X436_splice	ENST00000391945	NM_000400.3	436																																														NEWRECORD																																		
ICOSLG	23308	MSKCC	GRCh37	21	45657072	45657072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			272	50	369	0	ENST00000407780.3:c.84G>A	p.Met28Ile	p.M28I	ENST00000407780	NM_001283052.1	28	atG/atA																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66766211	66766211	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	87	186	0	ENST00000374690.3:c.1223A>T	p.Tyr408Phe	p.Y408F	ENST00000374690	NM_000044.3	408	tAt/tTt																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52584510	52584511	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			567	95	549	0	ENST00000394830.3:c.4502_4503del	p.Glu1501GlyfsTer7	p.E1501Gfs*7	ENST00000394830	NM_018313.4	1501	gAG/g																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38959898	38959898	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			732	166	594	0	ENST00000357387.3:c.2034del	p.Lys678AsnfsTer14	p.K678Nfs*14	ENST00000357387	NM_152756.3	678	aaA/aa																																													NEWRECORD																																		
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			501	119	308	1	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70405826	70405827	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			578	119	639	0	ENST00000373644.4:c.3345dup	p.Tyr1116IlefsTer19	p.Y1116Ifs*19	ENST00000373644	NM_030625.2	1114	caa/cAaa																																													NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	25	236	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																													NEWRECORD																																		
CDKN1B	1027	MSKCC	GRCh37	12	12870898	12870898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			681	143	394	0	ENST00000228872.4:c.127del	p.Arg43GlyfsTer28	p.R43Gfs*28	ENST00000228872	NM_004064.3	42	aCc/ac																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49431198	49431199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	74	509	0	ENST00000301067.7:c.9940dup	p.Ser3314PhefsTer109	p.S3314Ffs*109	ENST00000301067	NM_003482.3	3314	tcc/tTcc																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103519134	103519135	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			755	152	514	0	ENST00000355739.4:c.2478dup	p.Asn827Ter	p.N827*	ENST00000355739	NM_000123.3	824	-/T																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10270725	10270726	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			377	66	701	0	ENST00000340748.4:c.1009dup	p.Met337AsnfsTer28	p.M337Nfs*28	ENST00000340748		337	atg/aAtg																																													NEWRECORD																																		
SMARCB1	6598	MSKCC	GRCh37	22	24135859	24135859	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	32	445	0	ENST00000263121.7:c.351del	p.Thr118ProfsTer25	p.T118Pfs*25	ENST00000263121	NM_003073.3	116	Ccc/cc																																													NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202139613	202139614	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0001649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			607	121	519	0	ENST00000358485.4:c.775dup	p.Glu259GlyfsTer18	p.E259Gfs*18	ENST00000358485	NM_001080125.1	258	-/G																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	82	315	0	ENST00000263967.3:c.3132T>A	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaA																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56155582	56155583	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAATCAC			P-0003641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	74	229	0	ENST00000399503.3:c.675_681dup	p.Leu228GlufsTer6	p.L228Efs*6	ENST00000399503	NM_005921.1	225	atg/atGAATCACg																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56179388	56179389	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	T			P-0003641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	88	282	0	ENST00000399503.3:c.3701_3702delinsT	p.Lys1234IlefsTer11	p.K1234Ifs*11	ENST00000399503	NM_005921.1	1234	aAA/aT																																													NEWRECORD																																		
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	83	385	0	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	142	738	12	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15308382	15308383	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	114	1232	1	ENST00000263388.2:c.125dup	p.Cys43LeufsTer32	p.C43Lfs*32	ENST00000263388	NM_000435.2	42	cct/ccCt																																													NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1223	159	1363	1	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	128	966	4	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	111	563	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2217783	2217783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	125	1052	0	ENST00000398665.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000398665	NM_032482.2	853	Cgc/Tgc																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30691807	30691807	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	54	729	0	ENST00000359013.4:c.387del	p.Lys130SerfsTer19	p.K130Sfs*19	ENST00000359013	NM_001024847.2	128	gaC/ga																																													NEWRECORD																																		
HIST1H3E	8353	MSKCC	GRCh37	6	26225507	26225507	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	57	374	0	ENST00000360408.1:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000360408	NM_003532.2	42	tAc/tGc																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101417	27101417	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	110	808	0	ENST00000324856.7:c.4703delC	p.Pro1568LeufsTer44	p.P1568Lfs*44	ENST00000324856	NM_006015.4	1567	Ccc/cc																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152420067	152420067	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141662120		P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	25	468	0	ENST00000206249.3:c.1754C>T	p.Thr585Met	p.T585M	ENST00000206249	NM_000125.3	585	aCg/aTg																																													NEWRECORD																																		
ERCC3	2071	MSKCC	GRCh37	2	128016909	128016909	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	86	692	1	ENST00000285398.2:c.2180A>T	p.Glu727Val	p.E727V	ENST00000285398	NM_000122.1	727	gAg/gTg																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117681120	117681120	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	32	536	0	ENST00000368508.3:c.3500delT	p.Leu1167Ter	p.L1167*	ENST00000368508	NM_002944.2	1167	tTa/ta																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16258556	16258556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	75	627	0	ENST00000375759.3:c.5821G>A	p.Ala1941Thr	p.A1941T	ENST00000375759	NM_015001.2	1941	Gct/Act																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101501	27101501	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	111	1233	0	ENST00000324856.7:c.4783A>G	p.Met1595Val	p.M1595V	ENST00000324856	NM_006015.4	1595	Atg/Gtg																																													NEWRECORD																																		
MUTYH	4595	MSKCC	GRCh37	1	45805891	45805891	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	102	810	0	ENST00000372115.3:c.36G>T	p.Trp12Cys	p.W12C	ENST00000372115	NM_001048171.1	12	tgG/tgT																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65305457	65305457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	34	453	1	ENST00000342505.4:c.2671C>T	p.Leu891Phe	p.L891F	ENST00000342505	NM_002227.2	891	Ctc/Ttc																																													NEWRECORD																																		
FAM46C	54855	MSKCC	GRCh37	1	118166443	118166443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	33	314	0	ENST00000369448.3:c.953C>T	p.Thr318Ile	p.T318I	ENST00000369448	NM_017709.3	318	aCc/aTc																																													NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120469220	120469220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	69	652	0	ENST00000256646.2:c.3907A>G	p.Thr1303Ala	p.T1303A	ENST00000256646	NM_024408.3	1303	Acc/Gcc																																													NEWRECORD																																		
RFWD2	64326	MSKCC	GRCh37	1	175958564	175958564	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	16	647	0	ENST00000367669.3:c.1781T>C	p.Val594Ala	p.V594A	ENST00000367669	NM_022457.5	594	gTa/gCa																																													NEWRECORD																																		
SUFU	51684	MSKCC	GRCh37	10	104375090	104375090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	74	721	1	ENST00000369902.3:c.1088C>T	p.Thr363Met	p.T363M	ENST00000369902	NM_016169.3	363	aCg/aTg																																													NEWRECORD																																		
INPPL1	3636	MSKCC	GRCh37	11	71942053	71942053	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	112	1183	1	ENST00000298229.2:c.1322delA	p.Asn441ThrfsTer2	p.N441Tfs*2	ENST00000298229	NM_001567.3	439	ccA/cc																																													NEWRECORD																																		
INPPL1	3636	MSKCC	GRCh37	11	71948259	71948259	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	161	1763	0	ENST00000298229.2:c.2974del	p.Val992SerfsTer139	p.V992Sfs*139	ENST00000298229	NM_001567.3	991	Ggg/gg																																													NEWRECORD																																		
H3F3C	440093	MSKCC	GRCh37	12	31944943	31944943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	84	583	0	ENST00000340398.3:c.158G>A	p.Arg53His	p.R53H	ENST00000340398	NM_001013699.2	53	cGt/cAt																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49448408	49448408	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	98	798	3	ENST00000301067.7:c.303del	p.Ser102AlafsTer28	p.S102Afs*28	ENST00000301067	NM_003482.3	101	ggG/gg																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49449100	49449100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	81	612	2	ENST00000301067.7:c.8G>A	p.Ser3Asn	p.S3N	ENST00000301067	NM_003482.3	3	aGc/aAc																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56481648	56481648	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	120	880	0	ENST00000267101.3:c.683A>G	p.His228Arg	p.H228R	ENST00000267101	NM_001982.3	228	cAt/cGt																																													NEWRECORD																																		
CDK4	1019	MSKCC	GRCh37	12	58144864	58144864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	47	531	2	ENST00000257904.6:c.364C>T	p.Arg122Cys	p.R122C	ENST00000257904	NM_000075.3	122	Cgc/Tgc																																													NEWRECORD																																		
MSI1	4440	MSKCC	GRCh37	12	120794732	120794732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	102	851	1	ENST00000257552.2:c.625G>A	p.Ala209Thr	p.A209T	ENST00000257552	NM_002442.3	209	Gcc/Acc																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133209345	133209345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	99	881	0	ENST00000320574.5:c.6041G>T	p.Gly2014Val	p.G2014V	ENST00000320574	NM_006231.2	2014	gGg/gTg																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	28880897	28880897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	48	435	0	ENST00000282397.4:c.3733G>A	p.Asp1245Asn	p.D1245N	ENST00000282397	NM_002019.4	1245	Gac/Aac																																													NEWRECORD																																		
FOXO1	2308	MSKCC	GRCh37	13	41134954	41134954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	22	334	0	ENST00000379561.5:c.674G>A	p.Arg225His	p.R225H	ENST00000379561	NM_002015.3	225	cGt/cAt																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48955484	48955484	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	14	395	0	ENST00000267163.4:c.1600A>C	p.Ser534Arg	p.S534R	ENST00000267163	NM_000321.2	534	Agt/Cgt																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103524654	103524654	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	54	538	0	ENST00000355739.4:c.2785A>G	p.Asn929Asp	p.N929D	ENST00000355739	NM_000123.3	929	Aac/Gac																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110435652	110435652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1085	162	1287	4	ENST00000375856.3:c.2749G>A	p.Gly917Ser	p.G917S	ENST00000375856	NM_003749.2	917	Ggc/Agc																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110437412	110437412	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	69	862	0	ENST00000375856.3:c.989A>G	p.Asn330Ser	p.N330S	ENST00000375856	NM_003749.2	330	aAc/aGc																																													NEWRECORD																																		
PRKD1	5587	MSKCC	GRCh37	14	30194831	30194831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	41	774	1	ENST00000331968.5:c.314G>A	p.Arg105His	p.R105H	ENST00000331968	NM_002742.2	105	cGc/cAc																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88670391	88670391	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	13	430	0	ENST00000360948.2:c.1293+2T>C		p.X431_splice	ENST00000360948	NM_001012338.2	431																																														NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99465390	99465390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	49	495	0	ENST00000268035.6:c.2215C>T	p.Arg739Trp	p.R739W	ENST00000268035	NM_000875.3	739	Cgg/Tgg																																													NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	354308	354308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	44	720	0	ENST00000262320.3:c.1250G>A	p.Arg417His	p.R417H	ENST00000262320	NM_003502.3	417	cGc/cAc																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67132641	67132641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	39	721	0	ENST00000412916.2:c.524G>A	p.Gly175Asp	p.G175D	ENST00000412916		175	gGt/gAt																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89349156	89349156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	100	1436	1	ENST00000301030.4:c.3794C>T	p.Ser1265Phe	p.S1265F	ENST00000301030	NM_001256183.1	1265	tCc/tTc																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56437578	56437578	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	104	893	0	ENST00000407977.2:c.884A>G	p.His295Arg	p.H295R	ENST00000407977		295	cAt/cGt																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56492772	56492773	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	72	728	0	ENST00000407977.2:c.166dup	p.Asp56GlyfsTer19	p.D56Gfs*19	ENST00000407977		56	gac/gGac																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63533914	63533914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	68	410	0	ENST00000307078.5:c.1240C>T	p.Arg414Trp	p.R414W	ENST00000307078	NM_004655.3	414	Cgg/Tgg																																													NEWRECORD																																		
TCF3	6929	MSKCC	GRCh37	19	1615812	1615812	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	32	552	1	ENST00000344749.5:c.1459C>T	p.Arg487Ter	p.R487*	ENST00000344749	NM_001136139.2	487	Cga/Tga																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2226751	2226751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	150	1256	6	ENST00000398665.3:c.4231G>A	p.Ala1411Thr	p.A1411T	ENST00000398665	NM_032482.2	1411	Gcc/Acc																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5221081	5221081	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199805837		P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	58	690	0	ENST00000357368.4:c.3385G>A	p.Ala1129Thr	p.A1129T	ENST00000357368	NM_002850.3	1129	Gcc/Acc																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10262175	10262175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	67	829	1	ENST00000340748.4:c.2116G>A	p.Asp706Asn	p.D706N	ENST00000340748		706	Gat/Aat																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11129671	11129671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	86	900	1	ENST00000344626.4:c.2477C>T	p.Ala826Val	p.A826V	ENST00000344626	NM_003072.3	826	gCc/gTc																																													NEWRECORD																																		
UPF1	5976	MSKCC	GRCh37	19	18964077	18964077	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	52	595	0	ENST00000262803.5:c.1078del	p.Asp360MetfsTer46	p.D360Mfs*46	ENST00000262803	NM_002911.3	358	caG/ca																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50910381	50910381	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	118	1059	0	ENST00000440232.2:c.1636C>A	p.Leu546Met	p.L546M	ENST00000440232	NM_002691.3	546	Ctg/Atg																																													NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50910394	50910394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	116	1053	1	ENST00000440232.2:c.1649G>A	p.Gly550Asp	p.G550D	ENST00000440232	NM_002691.3	550	gGc/gAc																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25966526	25966526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	45	665	0	ENST00000435504.4:c.2680G>A	p.Ala894Thr	p.A894T	ENST00000435504		894	Gcc/Acc																																													NEWRECORD																																		
ASXL2	55252	MSKCC	GRCh37	2	25991737	25991737	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	36	327	0	ENST00000435504.4:c.505G>A	p.Ala169Thr	p.A169T	ENST00000435504		169	Gcg/Acg																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47703590	47703590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	44	688	0	ENST00000233146.2:c.2090G>A	p.Cys697Tyr	p.C697Y	ENST00000233146	NM_000251.2	697	tGt/tAt																																													NEWRECORD																																		
INPP4A	3631	MSKCC	GRCh37	2	99182601	99182601	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	57	409	0	ENST00000074304.5:c.2404G>T	p.Gly802Cys	p.G802C	ENST00000074304	NM_001134224.1	802	Ggc/Tgc																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212989623	212989623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	22	276	0	ENST00000342788.4:c.88G>A	p.Ala30Thr	p.A30T	ENST00000342788	NM_005235.2	30	Gca/Aca																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227661852	227661852	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	115	1244	0	ENST00000305123.5:c.1603A>G	p.Thr535Ala	p.T535A	ENST00000305123	NM_005544.2	535	Acc/Gcc																																													NEWRECORD																																		
SMARCB1	6598	MSKCC	GRCh37	22	24175871	24175871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	82	625	2	ENST00000263121.7:c.1099G>A	p.Asp367Asn	p.D367N	ENST00000263121	NM_003073.3	367	Gac/Aac																																													NEWRECORD																																		
MLH1	4292	MSKCC	GRCh37	3	37038114	37038114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	18	116	0	ENST00000231790.2:c.121G>A	p.Asp41Asn	p.D41N	ENST00000231790	NM_000249.3	41	Gat/Aat																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49928978	49928978	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs200454353		P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	74	860	0	ENST00000296474.3:c.3388C>T	p.Arg1130Ter	p.R1130*	ENST00000296474	NM_002447.2	1130	Cga/Tga																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49940586	49940586	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	31	793	0	ENST00000296474.3:c.457A>G	p.Thr153Ala	p.T153A	ENST00000296474	NM_002447.2	153	Aca/Gca																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52678753	52678753	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	47	509	0	ENST00000394830.3:c.866A>G	p.His289Arg	p.H289R	ENST00000394830	NM_018313.4	289	cAt/cGt																																													NEWRECORD																																		
MITF	4286	MSKCC	GRCh37	3	69987043	69987043	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	71	846	0	ENST00000352241.4:c.425A>G	p.Tyr142Cys	p.Y142C	ENST00000352241	NM_198159.2	142	tAc/tGc																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134977886	134977886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	34	603	0	ENST00000398015.3:c.2879G>A	p.Gly960Asp	p.G960D	ENST00000398015	NM_004441.4	960	gGc/gAc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178928065	178928065	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	40	639	0	ENST00000263967.3:c.1343T>C	p.Val448Ala	p.V448A	ENST00000263967	NM_006218.2	448	gTa/gCa																																													NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185191118	185191118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	65	617	1	ENST00000265026.3:c.1999G>A	p.Ala667Thr	p.A667T	ENST00000265026	NM_004721.4	667	Gcc/Acc																																													NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189604280	189604280	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	82	688	0	ENST00000264731.3:c.1447A>G	p.Asn483Asp	p.N483D	ENST00000264731	NM_003722.4	483	Aac/Gac																																													NEWRECORD																																		
MSH3	4437	MSKCC	GRCh37	5	79974842	79974842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	36	558	0	ENST00000265081.6:c.1270G>A	p.Val424Ile	p.V424I	ENST00000265081	NM_002439.4	424	Gta/Ata																																													NEWRECORD																																		
HLA-A	3105	MSKCC	GRCh37	6	29911141	29911141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	33	638	0	ENST00000376809.5:c.440A>G	p.Tyr147Cys	p.Y147C	ENST00000376809	NM_002116.7	147	tAc/tGc																																													NEWRECORD																																		
INHBA	3624	MSKCC	GRCh37	7	41730120	41730120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	28	373	0	ENST00000242208.4:c.409C>T	p.His137Tyr	p.H137Y	ENST00000242208	NM_002192.2	137	Cac/Tac																																													NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50367272	50367272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	58	503	0	ENST00000331340.3:c.79G>T	p.Gly27Cys	p.G27C	ENST00000331340	NM_006060.4	27	Ggc/Tgc																																													NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50455067	50455067	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	42	347	0	ENST00000331340.3:c.614A>T	p.Tyr205Phe	p.Y205F	ENST00000331340	NM_006060.4	205	tAt/tTt																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55214332	55214332	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	82	742	0	ENST00000275493.2:c.458A>G	p.Asn153Ser	p.N153S	ENST00000275493	NM_005228.3	153	aAc/aGc																																													NEWRECORD																																		
EZH2	2146	MSKCC	GRCh37	7	148506217	148506217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	52	721	0	ENST00000320356.2:c.2141G>A	p.Gly714Asp	p.G714D	ENST00000320356	NM_004456.4	714	gGt/gAt																																													NEWRECORD																																		
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	43	816	2	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																													NEWRECORD																																		
PREX2	80243	MSKCC	GRCh37	8	69002849	69002849	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	30	350	0	ENST00000288368.4:c.2149C>T	p.Gln717Ter	p.Q717*	ENST00000288368	NM_024870.2	717	Cag/Tag																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145737081	145737081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	60	707	2	ENST00000428558.2:c.3485G>A	p.Arg1162His	p.R1162H	ENST00000428558	NM_004260.3	1162	cGc/cAc																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8436642	8436642	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	27	575	0	ENST00000356435.5:c.4036A>G	p.Ile1346Val	p.I1346V	ENST00000356435		1346	Att/Gtt																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974782	21974782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138677674		P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	26	271	1	ENST00000304494.5:c.45G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tgG/tgA																																													NEWRECORD																																		
TEK	7010	MSKCC	GRCh37	9	27180358	27180358	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	53	442	0	ENST00000380036.4:c.1022A>T	p.Glu341Val	p.E341V	ENST00000380036	NM_000459.3	341	gAg/gTg																																													NEWRECORD																																		
TEK	7010	MSKCC	GRCh37	9	27190602	27190602	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	70	918	0	ENST00000380036.4:c.1403A>G	p.Glu468Gly	p.E468G	ENST00000380036	NM_000459.3	468	gAg/gGg																																													NEWRECORD																																		
FANCC	2176	MSKCC	GRCh37	9	97912259	97912259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	50	640	1	ENST00000289081.3:c.632C>A	p.Pro211His	p.P211H	ENST00000289081	NM_000136.2	211	cCt/cAt																																													NEWRECORD																																		
KLF4	9314	MSKCC	GRCh37	9	110250227	110250227	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	79	857	0	ENST00000374672.4:c.448T>C	p.Phe150Leu	p.F150L	ENST00000374672	NM_004235.4	150	Ttc/Ctc																																													NEWRECORD																																		
RXRA	6256	MSKCC	GRCh37	9	137321028	137321028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	109	1084	2	ENST00000481739.1:c.985G>A	p.Gly329Arg	p.G329R	ENST00000481739	NM_002957.4	329	Ggg/Agg																																													NEWRECORD																																		
ZRSR2	8233	MSKCC	GRCh37	X	15841027	15841027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	81	509	0	ENST00000307771.7:c.1111G>A	p.Asp371Asn	p.D371N	ENST00000307771	NM_005089.3	371	Gac/Aac																																													NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39933617	39933617	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	73	275	0	ENST00000378444.4:c.982del	p.Asp328ThrfsTer50	p.D328Tfs*50	ENST00000378444	NM_001123385.1	328	Gac/ac																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44937657	44937657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	30	287	0	ENST00000377967.4:c.2845C>T	p.Arg949Cys	p.R949C	ENST00000377967	NM_021140.2	949	Cgt/Tgt																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53243965	53243965	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	123	588	0	ENST00000375401.3:c.1028A>G	p.Asp343Gly	p.D343G	ENST00000375401	NM_004187.3	343	gAt/gGt																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70360576	70360576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	163	570	0	ENST00000374080.3:c.6136G>A	p.Ala2046Thr	p.A2046T	ENST00000374080		2046	Gcc/Acc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	485	345	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	250	336	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151860143	151860143	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	101	380	4	ENST00000262189.6:c.10519C>T	p.Arg3507Ter	p.R3507*	ENST00000262189	NM_170606.2	3507	Cga/Tga																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11210189	11210189	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	96	430	0	ENST00000361445.4:c.4564G>A	p.Gly1522Ser	p.G1522S	ENST00000361445	NM_004958.3	1522	Ggt/Agt																																													NEWRECORD																																		
PIK3R3	8503	MSKCC	GRCh37	1	46527726	46527726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	110	295	1	ENST00000262741.5:c.639G>T	p.Arg213Ser	p.R213S	ENST00000262741	NM_003629.3	213	agG/agT																																													NEWRECORD																																		
REL	5966	MSKCC	GRCh37	2	61144075	61144075	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	122	574	0	ENST00000295025.8:c.458A>T	p.Gln153Leu	p.Q153L	ENST00000295025	NM_002908.2	153	cAa/cTa																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187524584	187524584	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	112	436	0	ENST00000441802.2:c.11096A>G	p.Glu3699Gly	p.E3699G	ENST00000441802	NM_005245.3	3699	gAg/gGg																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187531125	187531125	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	97	434	2	ENST00000441802.2:c.9898G>T	p.Glu3300Ter	p.E3300*	ENST00000441802	NM_005245.3	3300	Gag/Tag																																													NEWRECORD																																		
SDHA	6389	MSKCC	GRCh37	5	224620	224620	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	45	164	0	ENST00000264932.6:c.296A>G	p.His99Arg	p.H99R	ENST00000264932	NM_004168.2	99	cAc/cGc																																													NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35876457	35876457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	110	382	0	ENST00000303115.3:c.1249C>G	p.Pro417Ala	p.P417A	ENST00000303115	NM_002185.3	417	Cct/Gct																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140624481	140624481	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	43	145	0	ENST00000288602.6:c.23G>T	p.Gly8Val	p.G8V	ENST00000288602	NM_004333.4	8	gGt/gTt																																													NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64138116	64138116	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	89	342	0	ENST00000334205.4:c.2039G>T	p.Arg680Leu	p.R680L	ENST00000334205	NM_003942.2	680	cGc/cTc																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64577430	64577430	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	248	505	0	ENST00000337652.1:c.152A>T	p.Asn51Ile	p.N51I	ENST00000337652	NM_130803.2	51	aAc/aTc																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115109974	115109974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	102	409	1	ENST00000257566.3:c.1904G>T	p.Arg635Leu	p.R635L	ENST00000257566	NM_016569.3	635	cGc/cTc																																													NEWRECORD																																		
MAX	4149	MSKCC	GRCh37	14	65544748	65544748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	164	311	0	ENST00000358664.4:c.178C>T	p.Arg60Trp	p.R60W	ENST00000358664	NM_002382.4	60	Cgg/Tgg																																													NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42028571	42028571	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	404	801	0	ENST00000219905.7:c.4109G>C	p.Gly1370Ala	p.G1370A	ENST00000219905	NM_001164273.1	1370	gGc/gCc																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88420309	88420309	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	256	263	0	ENST00000360948.2:c.2377C>G	p.Arg793Gly	p.R793G	ENST00000360948	NM_001012338.2	793	Cga/Gga																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88678416	88678416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	818	689	0	ENST00000360948.2:c.1120G>T	p.Gly374Cys	p.G374C	ENST00000360948	NM_001012338.2	374	Ggc/Tgc																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	11984842	11984842	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	217	344	0	ENST00000353533.5:c.388G>T	p.Val130Phe	p.V130F	ENST00000353533	NM_003010.3	130	Gtt/Ttt																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10291118	10291118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	279	444	0	ENST00000340748.4:c.353G>T	p.Arg118Leu	p.R118L	ENST00000340748		118	cGt/cTt																																													NEWRECORD																																		
MEF2B	100271849	MSKCC	GRCh37	19	19260177	19260177	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	274	447	0	ENST00000162023.5:c.116G>C	p.Cys39Ser	p.C39S	ENST00000162023		39	tGt/tCt																																													NEWRECORD																																		
XIAP	331	MSKCC	GRCh37	X	123019880	123019880	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	108	449	0	ENST00000355640.3:c.368G>T	p.Ser123Ile	p.S123I	ENST00000355640		123	aGc/aTc																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47164048	47164049	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	76	461	0	ENST00000409792.3:c.2077dup	p.Ala693GlyfsTer7	p.A693Gfs*7	ENST00000409792	NM_014159.6	693	gct/gGct																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106509959	106509959	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	208	477	0	ENST00000359195.3:c.1954del	p.Glu652ArgfsTer16	p.E652Rfs*16	ENST00000359195	NM_002649.2	651	ttG/tt																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212578365	212578365	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	126	333	0	ENST00000342788.4:c.892del	p.Val298TrpfsTer2	p.V298Wfs*2	ENST00000342788	NM_005235.2	298	Gtg/tg																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57864689	57864690	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	272	661	0	ENST00000228682.2:c.2166_2167delinsTT	p.Met722_Asp723delinsIleTyr	p.M722_D723delinsIY	ENST00000228682	NM_005269.2	722	atGGac/atTTac																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	112	395	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0006230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	80	336	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																													NEWRECORD																																		
INPP4A	3631	MSKCC	GRCh37	2	99175929	99175929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	83	417	1	ENST00000074304.5:c.1841G>A	p.Cys614Tyr	p.C614Y	ENST00000074304	NM_001134224.1	614	tGc/tAc																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55968551	55968551	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	82	434	0	ENST00000263923.4:c.2112T>A	p.Asn704Lys	p.N704K	ENST00000263923	NM_002253.2	704	aaT/aaA																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578293	7578977	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAAGCAACTGGAAGACGGCAGCAAAGAAACAAACATGCGTAAGCACCTCCTGCAACCCACTAGCGAGCTAGAGAGAGTTGGCGTCTACACCTCAGGAGCTTTTCTTTTTTTTTTTTTTTTTTGAGATAGGGTCTTGCTCTGTCACTCAGGCTGGAGCACAGTGGTGTGATCACAGCTCACTGCAGCCTCCATCTCCTGGCCTCAAGTGATCTTCCCACCTCAGCCTCCTAAGTGGCTGGGACTATAGGTGTGCACCACCATGCCTGGCTAATTTTTTGTATTTTTTTGTAGAGACGAGGTTTCATCATGTTACCCAGGCTGGTCTTGAACTCCTGGGCTCAGGTGATCTGCCTGCCTTGGCCTCTTTGAG	AGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAAGCAACTGGAAGACGGCAGCAAAGAAACAAACATGCGTAAGCACCTCCTGCAACCCACTAGCGAGCTAGAGAGAGTTGGCGTCTACACCTCAGGAGCTTTTCTTTTTTTTTTTTTTTTTTGAGATAGGGTCTTGCTCTGTCACTCAGGCTGGAGCACAGTGGTGTGATCACAGCTCACTGCAGCCTCCATCTCCTGGCCTCAAGTGATCTTCCCACCTCAGCCTCCTAAGTGGCTGGGACTATAGGTGTGCACCACCATGCCTGGCTAATTTTTTGTATTTTTTTGTAGAGACGAGGTTTCATCATGTTACCCAGGCTGGTCTTGAACTCCTGGGCTCAGGTGATCTGCCTGCCTTGGCCTCTTTGAG	-			P-0006230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	138	383	0	ENST00000269305.4:c.375+335_560-4del		p.X125_splice	ENST00000269305	NM_001126112.2	125																																														NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411206	63411207	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	198	515	0	ENST00000330258.3:c.1960dup	p.Tyr654LeufsTer53	p.Y654Lfs*53	ENST00000330258	NM_152424.3	654	tat/tTat																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187534479	187534479	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	21	243	1	ENST00000441802.2:c.9247delA	p.Thr3083ProfsTer33	p.T3083Pfs*33	ENST00000441802	NM_005245.3	3083	Acc/cc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175607	112175608	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCCTCCA			P-0006230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	174	476	0	ENST00000257430.4:c.4319_4320insTCCATCC	p.Pro1442SerfsTer15	p.P1442Sfs*15	ENST00000257430	NM_000038.5	1439	cct/ccTCCTCCAt																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0003863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			122	74	197	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																													NEWRECORD																																		
EGFL7	51162	MSKCC	GRCh37	9	139566418	139566418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	23	169	0	ENST00000308874.7:c.677C>T	p.Ser226Leu	p.S226L	ENST00000308874		226	tCg/tTg																																													NEWRECORD																																		
PIK3C3	5289	MSKCC	GRCh37	18	39637900	39637900	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	168	302	0	ENST00000262039.4:c.2317C>G	p.Leu773Val	p.L773V	ENST00000262039	NM_002647.2	773	Ctt/Gtt																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151845722	151845722	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	158	326	0	ENST00000262189.6:c.13290G>C	p.Leu4430Phe	p.L4430F	ENST00000262189	NM_170606.2	4430	ttG/ttC																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46244682	46244682	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	198	316	0	ENST00000334344.6:c.2776G>C	p.Val926Leu	p.V926L	ENST00000334344	NM_152641.2	926	Gta/Cta																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578440	7578440	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs879254249		P-0003863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	113	196	0	ENST00000269305.4:c.490A>G	p.Lys164Glu	p.K164E	ENST00000269305	NM_001126112.2	164	Aag/Gag																																													NEWRECORD																																		
TCF3	6929	MSKCC	GRCh37	19	1632358	1632358	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	163	272	0	ENST00000344749.5:c.192G>C	p.Gln64His	p.Q64H	ENST00000344749	NM_001136139.2	64	caG/caC																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249013	55249014	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACCACC			P-0003863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	1193	235	0	ENST00000275493.2:c.2314_2315insACCACC	p.Asn771_Pro772insHisHis	p.N771_P772insHH	ENST00000275493	NM_005228.3	771	aac/aACCACCac																																													NEWRECORD																																		
PMS1	5378	MSKCC	GRCh37	2	190719268	190719268	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	224	296	1	ENST00000441310.2:c.1270G>T	p.Glu424Ter	p.E424*	ENST00000441310	NM_000534.4	424	Gaa/Taa																																													NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185190937	185190937	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	382	631	0	ENST00000265026.3:c.1818G>C	p.Leu606Phe	p.L606F	ENST00000265026	NM_004721.4	606	ttG/ttC																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56160601	56160601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	276	389	0	ENST00000399503.3:c.875C>T	p.Ser292Leu	p.S292L	ENST00000399503	NM_005921.1	292	tCa/tTa																																													NEWRECORD																																		
WT1	7490	MSKCC	GRCh37	11	32421519	32421519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	280	377	0	ENST00000332351.3:c.1073C>T	p.Thr358Met	p.T358M	ENST00000332351	NM_024426.4	358	aCg/aTg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108138048	108138048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	363	407	0	ENST00000278616.4:c.2617G>A	p.Gly873Arg	p.G873R	ENST00000278616	NM_000051.3	873	Gga/Aga																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15995373	15995373	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	64	374	0	ENST00000268712.3:c.2821-1G>T		p.X941_splice	ENST00000268712	NM_006311.3	941																																														NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48919262	48919301	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGTTGATAATGCTATGTCAAGACTGTTGAAGAAGTATG	AAAGTTGATAATGCTATGTCAAGACTGTTGAAGAAGTATG	-			P-0004753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	244	328	0	ENST00000267163.4:c.428_467del	p.Lys143MetfsTer19	p.K143Mfs*19	ENST00000267163	NM_000321.2	143	AAAGTTGATAATGCTATGTCAAGACTGTTGAAGAAGTATGat/at																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061575	38061576	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0004753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	195	218	0	ENST00000250448.2:c.412_413dup	p.Met138IlefsTer2	p.M138Ifs*2	ENST00000250448	NM_004496.3	138	atg/atATg																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115120780	115120787	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCGGTC	TGCCGGTC	-			P-0004753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	302	441	0	ENST00000257566.3:c.219_226del	p.Glu73AspfsTer35	p.E73Dfs*35	ENST00000257566	NM_016569.3	73	gaGACCGGCAtc/gatc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579590	7579591	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CT			P-0004753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	277	328	0	ENST00000269305.4:c.97-2_97-1dupAG	p.Leu35ProfsTer10	p.L35Pfs*10	ENST00000269305	NM_001126112.2	32	-/AG																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151932964	151932971	+	frameshift_variant	Frame_Shift_Del	DEL	CCGACAGT	CCGACAGT	-			P-0004753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			21	187	8	0	ENST00000262189.6:c.2700_2707del	p.Leu901AlafsTer30	p.L901Afs*30	ENST00000262189	NM_170606.2	900	ggACTGTCGGgg/gggg																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0005562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	374	381	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578247	7578247	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	368	445	0	ENST00000269305.4:c.602delT	p.Leu201CysfsTer46	p.L201Cfs*46	ENST00000269305	NM_001126112.2	201	tTg/tg																																													NEWRECORD																																		
AKT2	208	MSKCC	GRCh37	19	40743879	40743879	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1043	114	326	0	ENST00000392038.2:c.828C>G	p.Ile276Met	p.I276M	ENST00000392038	NM_001626.4	276	atC/atG																																													NEWRECORD																																		
MED12	9968	MSKCC	GRCh37	X	70339987	70339987	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	402	241	0	ENST00000374080.3:c.520A>G	p.Lys174Glu	p.K174E	ENST00000374080		174	Aag/Gag																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001631-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			257	172	252	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001631-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			379	323	460	1	ENST00000263967.3:c.3127A>T	p.Met1043Leu	p.M1043L	ENST00000263967	NM_006218.2	1043	Atg/Ttg																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151845412	151845412	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001631-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	286	517	0	ENST00000262189.6:c.13600C>T	p.Gln4534Ter	p.Q4534*	ENST00000262189	NM_170606.2	4534	Cag/Tag																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68849662	68849663	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GT			P-0001631-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	197	393	0	ENST00000261769.5:c.1565+1_1565+2dup		p.T522fs	ENST00000261769	NM_004360.3	522	aca/acGTa																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	140	419	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	31	154	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	28	172	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56489535	56489535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	212	395	1	ENST00000267101.3:c.2000G>A	p.Arg667His	p.R667H	ENST00000267101	NM_001982.3	667	cGt/cAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	119	418	0	ENST00000257430.4:c.4393_4394dupAG	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	115	374	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																													NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	145	451	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	109	333	0	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	113	378	0	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152129329	152129329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	155	497	1	ENST00000206249.3:c.287del	p.Gly96ValfsTer13	p.G96Vfs*13	ENST00000206249	NM_000125.3	94	ctG/ct																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57480483	57480483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	29	290	1	ENST00000371085.3:c.478C>T	p.Arg160Cys	p.R160C	ENST00000371085	NM_000516.4	160	Cgt/Tgt																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249542	153249542	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	84	237	0	ENST00000281708.4:c.1237-1G>A		p.X413_splice	ENST00000281708	NM_033632.3	413																																														NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	128	381	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1248	360	1181	1	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	69	217	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81960742	81960742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	306	915	1	ENST00000359376.3:c.2473G>A	p.Glu825Lys	p.E825K	ENST00000359376	NM_002661.3	825	Gag/Aag																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56439936	56439936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	85	434	3	ENST00000407977.2:c.656G>A	p.Arg219His	p.R219H	ENST00000407977		219	cGc/cAc																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	181	411	0	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118392858	118392858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	144	433	0	ENST00000534358.1:c.11890G>A	p.Ala3964Thr	p.A3964T	ENST00000534358	NM_005933.3	3964	Gcc/Acc																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78857238	78857238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	187	542	0	ENST00000306801.3:c.1604C>T	p.Thr535Met	p.T535M	ENST00000306801	NM_020761.2	535	aCg/aTg																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	274	874	2	ENST00000329236.7:c.1459+1G>A		p.X487_splice	ENST00000329236	NM_001204466.1	487																																														NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27094449	27094449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	92	348	0	ENST00000324856.7:c.3157C>T	p.Arg1053Cys	p.R1053C	ENST00000324856	NM_006015.4	1053	Cgc/Tgc																																													NEWRECORD																																		
RIT1	6016	MSKCC	GRCh37	1	155870301	155870301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	117	671	2	ENST00000368323.3:c.538C>T	p.Arg180Trp	p.R180W	ENST00000368323	NM_006912.5	180	Cgg/Tgg																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25497824	25497824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	85	540	0	ENST00000264709.3:c.625C>T	p.Arg209Cys	p.R209C	ENST00000264709	NM_175629.2	209	Cgc/Tgc																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29541235	29541235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	173	416	2	ENST00000389048.3:c.1582G>A	p.Ala528Thr	p.A528T	ENST00000389048	NM_004304.4	528	Gct/Act																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29917799	29917799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	101	545	1	ENST00000389048.3:c.869G>T	p.Trp290Leu	p.W290L	ENST00000389048	NM_004304.4	290	tGg/tTg																																													NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	30143117	30143117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	82	575	3	ENST00000389048.3:c.409C>T	p.Arg137Cys	p.R137C	ENST00000389048	NM_004304.4	137	Cgt/Tgt																																													NEWRECORD																																		
INPP4A	3631	MSKCC	GRCh37	2	99163066	99163066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	140	355	1	ENST00000074304.5:c.1072G>A	p.Val358Ile	p.V358I	ENST00000074304	NM_001134224.1	358	Gtc/Atc																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55127445	55127445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	83	582	0	ENST00000257290.5:c.233G>A	p.Ser78Asn	p.S78N	ENST00000257290	NM_006206.4	78	aGc/aAc																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187540380	187540380	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202097333		P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	112	300	0	ENST00000441802.2:c.7360C>T	p.Arg2454Trp	p.R2454W	ENST00000441802	NM_005245.3	2454	Cgg/Tgg																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38944548	38944548	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	93	411	0	ENST00000357387.3:c.4913C>T	p.Thr1638Ile	p.T1638I	ENST00000357387	NM_152756.3	1638	aCa/aTa																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173374	112173374	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	150	500	0	ENST00000257430.4:c.2083C>T	p.Gln695Ter	p.Q695*	ENST00000257430	NM_000038.5	695	Cag/Tag																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149514414	149514414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	173	565	0	ENST00000261799.4:c.530G>A	p.Arg177His	p.R177H	ENST00000261799	NM_002609.3	177	cGt/cAt																																													NEWRECORD																																		
IRF4	3662	MSKCC	GRCh37	6	398863	398863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	114	587	1	ENST00000380956.4:c.673C>A	p.Pro225Thr	p.P225T	ENST00000380956	NM_001195286.1	225	Cca/Aca																																													NEWRECORD																																		
HIST1H3C	8352	MSKCC	GRCh37	6	26045799	26045799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1384	384	1376	1	ENST00000540144.1:c.161G>A	p.Arg54His	p.R54H	ENST00000540144	NM_003531.2	54	cGc/cAc																																													NEWRECORD																																		
ETV1	2115	MSKCC	GRCh37	7	14026264	14026264	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	97	257	0	ENST00000405192.2:c.180A>C	p.Glu60Asp	p.E60D	ENST00000405192	NM_001163147.1	60	gaA/gaC																																													NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50444483	50444483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	35	88	0	ENST00000331340.3:c.413G>A	p.Ser138Asn	p.S138N	ENST00000331340	NM_006060.4	138	aGc/aAc																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242454	55242454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	86	421	0	ENST00000275493.2:c.2224G>A	p.Val742Ile	p.V742I	ENST00000275493	NM_005228.3	742	Gtc/Atc																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116395479	116395479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	138	386	0	ENST00000397752.3:c.1772G>C	p.Arg591Pro	p.R591P	ENST00000397752	NM_000245.2	591	cGg/cCg																																													NEWRECORD																																		
RECQL4	9401	MSKCC	GRCh37	8	145738814	145738814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	135	305	3	ENST00000428558.2:c.2251C>T	p.Arg751Trp	p.R751W	ENST00000428558	NM_004260.3	751	Cgg/Tgg																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114900964	114900964	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1353	409	1194	0	ENST00000543371.1:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000543371	NM_001198531.1	192	Cag/Tag																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108218066	108218066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	62	254	0	ENST00000278616.4:c.8645C>T	p.Ser2882Leu	p.S2882L	ENST00000278616	NM_000051.3	2882	tCa/tTa																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118352595	118352595	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	193	529	0	ENST00000534358.1:c.3800T>C	p.Val1267Ala	p.V1267A	ENST00000534358	NM_005933.3	1267	gTc/gCc																																													NEWRECORD																																		
H3F3C	440093	MSKCC	GRCh37	12	31945025	31945025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	134	934	0	ENST00000340398.3:c.76G>A	p.Ala26Thr	p.A26T	ENST00000340398	NM_001013699.2	26	Gcc/Acc																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46230569	46230569	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	161	593	0	ENST00000334344.6:c.818C>A	p.Pro273His	p.P273H	ENST00000334344	NM_152641.2	273	cCt/cAt																																													NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103518146	103518146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	41	295	0	ENST00000355739.4:c.2084C>T	p.Ala695Val	p.A695V	ENST00000355739	NM_000123.3	695	gCt/gTt																																													NEWRECORD																																		
TRAF7	84231	MSKCC	GRCh37	16	2220634	2220634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1058	354	815	1	ENST00000326181.6:c.251G>A	p.Arg84His	p.R84H	ENST00000326181	NM_032271.2	84	cGc/cAc																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63533740	63533740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	81	425	0	ENST00000307078.5:c.1414C>T	p.His472Tyr	p.H472Y	ENST00000307078	NM_004655.3	472	Cac/Tac																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10248620	10248620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	168	403	0	ENST00000340748.4:c.4133G>A	p.Arg1378Gln	p.R1378Q	ENST00000340748		1378	cGg/cAg																																													NEWRECORD																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52719286	52719286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	224	537	1	ENST00000322088.6:c.952C>T	p.Arg318Trp	p.R318W	ENST00000322088	NM_014225.5	318	Cgg/Tgg																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411416	63411416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	239	731	0	ENST00000330258.3:c.1751G>A	p.Arg584His	p.R584H	ENST00000330258	NM_152424.3	584	cGt/cAt																																													NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411575	63411575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	274	1035	2	ENST00000330258.3:c.1592G>A	p.Arg531Gln	p.R531Q	ENST00000330258	NM_152424.3	531	cGa/cAa																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76918952	76918952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1299	101	872	1	ENST00000373344.5:c.4039G>A	p.Val1347Met	p.V1347M	ENST00000373344	NM_000489.3	1347	Gtg/Atg																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76940002	76940002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	106	638	0	ENST00000373344.5:c.746G>A	p.Gly249Asp	p.G249D	ENST00000373344	NM_000489.3	249	gGt/gAt																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76952115	76952115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	189	658	1	ENST00000373344.5:c.320C>T	p.Ala107Val	p.A107V	ENST00000373344	NM_000489.3	107	gCg/gTg																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42792110	42792112	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	73	254	0	ENST00000575354.2:c.921_923del	p.Ala308del	p.A308del	ENST00000575354	NM_015125.3	305	aCTGct/act																																													NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47710024	47710027	+	frameshift_variant	Frame_Shift_Del	DEL	AAGT	AAGT	-			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	85	352	0	ENST00000233146.2:c.2743_2746del	p.Val915Ter	p.V915*	ENST00000233146	NM_000251.2	914	gAAGTa/ga																																													NEWRECORD																																		
PLCG2	5336	MSKCC	GRCh37	16	81973536	81973538	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	124	787	0	ENST00000359376.3:c.3355_3357del	p.Lys1119del	p.K1119del	ENST00000359376	NM_002661.3	1118	gAGAag/gag																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89653780	89653781	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	33	281	0	ENST00000371953.3:c.80-1_80del		p.X27_splice	ENST00000371953	NM_000314.4	27																																														NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0004834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	327	500	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	120	205	0	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180057235	180057235	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148392893		P-0004834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	42	335	0	ENST00000261937.6:c.503C>T	p.Thr168Met	p.T168M	ENST00000261937	NM_182925.4	168	aCg/aTg																																													NEWRECORD																																		
HIST1H3J	8356	MSKCC	GRCh37	6	27858185	27858185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	86	599	1	ENST00000359303.2:c.386G>A	p.Arg129His	p.R129H	ENST00000359303	NM_003535.2	129	cGt/cAt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112170752	112170753	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0004834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	89	452	0	ENST00000257430.4:c.1848_1849del	p.Leu616PhefsTer17	p.L616Ffs*17	ENST00000257430	NM_000038.5	616	ttGGtt/tttt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112170745	112170746	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	89	442	0	ENST00000257430.4:c.1842dup	p.Phe615IlefsTer19	p.F615Ifs*19	ENST00000257430	NM_000038.5	614	gca/gcAa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	9	367	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0011012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	17	368	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																													NEWRECORD																																		
INHBA	3624	MSKCC	GRCh37	7	41739678	41739678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	36	952	0	ENST00000242208.4:c.295G>A	p.Gly99Arg	p.G99R	ENST00000242208	NM_002192.2	99	Ggg/Agg																																													NEWRECORD																																		
IDH1	3417	MSKCC	GRCh37	2	209113343	209113344	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0011012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	15	408	0	ENST00000345146.2:c.163dup	p.Gln55ProfsTer14	p.Q55Pfs*14	ENST00000345146	NM_005896.2	55	caa/cCaa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0005873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	136	317	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
MCL1	4170	MSKCC	GRCh37	1	150550900	150550900	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	84	188	0	ENST00000369026.2:c.756T>A	p.His252Gln	p.H252Q	ENST00000369026	NM_021960.4	252	caT/caA																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112176926	112176926	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	140	382	0	ENST00000257430.4:c.5635G>T	p.Ala1879Ser	p.A1879S	ENST00000257430	NM_000038.5	1879	Gct/Tct																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453185	140453185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	99	226	0	ENST00000288602.6:c.1750C>T	p.Leu584Phe	p.L584F	ENST00000288602	NM_004333.4	584	Ctt/Ttt																																													NEWRECORD																																		
NTRK2	4915	MSKCC	GRCh37	9	87359975	87359975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	135	330	0	ENST00000277120.3:c.1283G>T	p.Arg428Leu	p.R428L	ENST00000277120		428	cGg/cTg																																													NEWRECORD																																		
RBM10	8241	MSKCC	GRCh37	X	47039687	47039688	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTTTGCCAAG			P-0005873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	146	606	0	ENST00000329236.7:c.907_916dup	p.Gly306ValfsTer6	p.G306Vfs*6	ENST00000329236	NM_001204466.1	302	gag/gaGTTTGCCAAGg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	18	208	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115704	8115705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	63	376	0	ENST00000346208.3:c.1052dup	p.Asn351LysfsTer20	p.N351Kfs*20	ENST00000346208		350	-/A																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115112399	115112400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			36	21	194	0	ENST00000257566.3:c.1340dup	p.Gly448ArgfsTer244	p.G448Rfs*244	ENST00000257566	NM_016569.3	447	cgc/cgGc																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67063703	67063704	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0007423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			17	18	236	0	ENST00000412916.2:c.152_153del	p.Gly51AlafsTer31	p.G51Afs*31	ENST00000412916		51	gGC/g																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56177371	56177402	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGTAATGAATGTTTTTTTCTTTCAGGTATAA	TGGTAATGAATGTTTTTTTCTTTCAGGTATAA	CCTGAAAGAAAAAAACATTCATT			P-0007423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	38	237	0	ENST00000399503.3:c.2370-26_2375delinsCCTGAAAGAAAAAAACATTCATT		p.X790_splice	ENST00000399503	NM_005921.1	790																																														NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138426123	138426123	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1217537873		P-0013858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	308	550	0	ENST00000289153.2:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000289153	NM_006219.2	470	Gaa/Aaa																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18443865	18443865	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	316	618	0	ENST00000266497.5:c.838T>C	p.Tyr280His	p.Y280H	ENST00000266497		280	Tat/Cat																																													NEWRECORD																																		
INHA	3623	MSKCC	GRCh37	2	220440203	220440203	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0013858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	358	1109	0	ENST00000243786.2:c.1056T>G	p.Tyr352Ter	p.Y352*	ENST00000243786	NM_002191.3	352	taT/taG																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180030224	180030224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	772	735	2	ENST00000261937.6:c.4060C>T	p.Arg1354Cys	p.R1354C	ENST00000261937	NM_182925.4	1354	Cgc/Tgc																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720737	89720737	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	GGG			P-0013858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	15	120	0	ENST00000371953.3:c.888delinsGGG	p.Cys296TrpfsTer12	p.C296Wfs*12	ENST00000371953	NM_000314.4	296	tgT/tgGGG																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0010203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	257	338	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	159	347	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	138	311	1	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0010203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	340	316	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66467901	66467901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	212	451	0	ENST00000273854.3:c.368C>T	p.Ala123Val	p.A123V	ENST00000273854	NM_004439.5	123	gCt/gTt																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119889	70119889	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	187	332	0	ENST00000245479.2:c.891C>A	p.Tyr297Ter	p.Y297*	ENST00000245479	NM_000346.3	297	taC/taA																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48573597	48573598	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	49	336	0	ENST00000342988.3:c.182dup	p.Thr62AsnfsTer8	p.T62Nfs*8	ENST00000342988	NM_005359.5	61	ata/aTta																																													NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925621	114925622	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCC			P-0010203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1451	377	973	0	ENST00000543371.1:c.1701_1704dup	p.Ser569ProfsTer41	p.S569Pfs*41	ENST00000543371	NM_001198531.1	567	gcc/gCCCCcc																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023307	27023307	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	11	61	0	ENST00000324856.7:c.413C>G	p.Ser138Ter	p.S138*	ENST00000324856	NM_006015.4	138	tCa/tGa																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	87	310	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	85	192	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133263850	133263850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	20	74	0	ENST00000320574.5:c.52G>A	p.Glu18Lys	p.E18K	ENST00000320574	NM_006231.2	18	Gag/Aag																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519930		P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	141	451	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																													NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38962631	38962631	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	93	364	0	ENST00000357387.3:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000357387	NM_152756.3	542	Gag/Cag																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56168741	56168741	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775802110		P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	128	285	0	ENST00000399503.3:c.1595G>A	p.Arg532Gln	p.R532Q	ENST00000399503	NM_005921.1	532	cGa/cAa																																													NEWRECORD																																		
RAD50	10111	MSKCC	GRCh37	5	131951767	131951767	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	73	279	0	ENST00000265335.6:c.3109G>C	p.Glu1037Gln	p.E1037Q	ENST00000265335		1037	Gaa/Caa																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99478625	99478625	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	115	323	0	ENST00000268035.6:c.3267T>A	p.Ser1089Arg	p.S1089R	ENST00000268035	NM_000875.3	1089	agT/agA																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68867192	68867192	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	82	208	0	ENST00000261769.5:c.2440-1G>A		p.X814_splice	ENST00000261769	NM_004360.3	814																																														NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29554307	29554307	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	102	241	0	ENST00000358273.4:c.2323G>A	p.Glu775Lys	p.E775K	ENST00000358273	NM_001042492.2	775	Gag/Aag																																													NEWRECORD																																		
CCNE1	898	MSKCC	GRCh37	19	30303651	30303651	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776712074		P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	112	258	0	ENST00000262643.3:c.79C>T	p.Arg27Cys	p.R27C	ENST00000262643	NM_001238.2	27	Cgc/Tgc																																													NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31388695	31388695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	108	312	0	ENST00000328111.2:c.1960C>T	p.Leu654Phe	p.L654F	ENST00000328111	NM_006892.3	654	Ctc/Ttc																																													NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66766213	66766213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	57	180	0	ENST00000374690.3:c.1225G>A	p.Gly409Arg	p.G409R	ENST00000374690	NM_000044.3	409	Ggg/Agg																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111524	8111525	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	98	295	0	ENST00000346208.3:c.1011dup	p.Cys338LeufsTer14	p.C338Lfs*14	ENST00000346208		337	gtc/gtCc																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0008126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	335	442	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108123615	108123616	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	126	369	0	ENST00000278616.4:c.1880dup	p.Gln628ProfsTer7	p.Q628Pfs*7	ENST00000278616	NM_000051.3	625	aat/aaTt																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108205735	108205735	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	342	427	0	ENST00000278616.4:c.8050C>T	p.Gln2684Ter	p.Q2684*	ENST00000278616	NM_000051.3	2684	Cag/Tag																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88680751	88680751	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	316	398	0	ENST00000360948.2:c.506G>T	p.Arg169Leu	p.R169L	ENST00000360948	NM_001012338.2	169	cGc/cTc																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1207081	1207081	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	327	406	1	ENST00000326873.7:c.169G>T	p.Glu57Ter	p.E57*	ENST00000326873	NM_000455.4	57	Gaa/Taa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	114	487	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49444932	49444933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	22	159	0	ENST00000301067.7:c.2533dup	p.Arg845ProfsTer3	p.R845Pfs*3	ENST00000301067	NM_003482.3	845	cgg/cCgg																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3786748	3786748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	106	506	0	ENST00000262367.5:c.4463C>T	p.Pro1488Leu	p.P1488L	ENST00000262367	NM_004380.2	1488	cCa/cTa																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023676	27023676	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	45	345	0	ENST00000324856.7:c.782C>G	p.Ser261Trp	p.S261W	ENST00000324856	NM_006015.4	261	tCg/tGg																																													NEWRECORD																																		
RAD54L	8438	MSKCC	GRCh37	1	46715730	46715730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	140	510	0	ENST00000371975.4:c.149C>A	p.Pro50His	p.P50H	ENST00000371975	NM_003579.3	50	cCt/cAt																																													NEWRECORD																																		
NFE2L2	4780	MSKCC	GRCh37	2	178098962	178098962	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	91	242	0	ENST00000397062.3:c.83T>C	p.Ile28Thr	p.I28T	ENST00000397062	NM_006164.4	28	aTa/aCa																																													NEWRECORD																																		
HIST1H3H	8357	MSKCC	GRCh37	6	27778051	27778051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1365	262	884	0	ENST00000369163.2:c.200C>T	p.Pro67Leu	p.P67L	ENST00000369163	NM_003536.2	67	cCt/cTt																																													NEWRECORD																																		
HLA-A	3105	MSKCC	GRCh37	6	29910349	29910349	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	121	403	1	ENST00000376809.5:c.19C>T	p.Arg7Ter	p.R7*	ENST00000376809	NM_002116.7	7	Cga/Tga																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30670985	30670985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	103	381	0	ENST00000376406.3:c.5761G>A	p.Ala1921Thr	p.A1921T	ENST00000376406	NM_014641.2	1921	Gca/Aca																																													NEWRECORD																																		
RET	5979	MSKCC	GRCh37	10	43596008	43596008	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	152	390	0	ENST00000355710.3:c.175G>T	p.Ala59Ser	p.A59S	ENST00000355710	NM_020975.4	59	Gcc/Tcc																																													NEWRECORD																																		
RPS6KA4	8986	MSKCC	GRCh37	11	64136054	64136054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	49	253	0	ENST00000334205.4:c.1315G>A	p.Val439Ile	p.V439I	ENST00000334205	NM_003942.2	439	Gtc/Atc																																													NEWRECORD																																		
FGF3	2248	MSKCC	GRCh37	11	69633677	69633677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	16	60	0	ENST00000334134.2:c.25C>T	p.Leu9Phe	p.L9F	ENST00000334134	NM_005247.2	9	Ctc/Ttc																																													NEWRECORD																																		
RAD52	5893	MSKCC	GRCh37	12	1042172	1042172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	58	465	0	ENST00000358495.3:c.53C>T	p.Ala18Val	p.A18V	ENST00000358495	NM_134424.2	18	gCt/gTt																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49435887	49435887	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	56	445	0	ENST00000301067.7:c.6094A>G	p.Lys2032Glu	p.K2032E	ENST00000301067	NM_003482.3	2032	Aag/Gag																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110435136	110435136	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs780127725		P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	57	271	1	ENST00000375856.3:c.3265G>C	p.Ala1089Pro	p.A1089P	ENST00000375856	NM_003749.2	1089	Gcc/Ccc																																													NEWRECORD																																		
TSHR	7253	MSKCC	GRCh37	14	81610314	81610314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	27	337	0	ENST00000298171.2:c.1912G>A	p.Ala638Thr	p.A638T	ENST00000298171	NM_000369.2	638	Gcc/Acc																																													NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89337232	89337232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	48	325	0	ENST00000301030.4:c.7799G>A	p.Arg2600His	p.R2600H	ENST00000301030	NM_001256183.1	2600	cGc/cAc																																													NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17118345	17118345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	57	423	0	ENST00000285071.4:c.1492G>T	p.Asp498Tyr	p.D498Y	ENST00000285071	NM_144997.5	498	Gat/Tat																																													NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37681124	37681124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	43	307	0	ENST00000447079.4:c.3293C>T	p.Ala1098Val	p.A1098V	ENST00000447079	NM_015083.1	1098	gCt/gTt																																													NEWRECORD																																		
FAM46C	54855	MSKCC	GRCh37	1	118166214	118166214	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	60	346	0	ENST00000369448.3:c.728del	p.Gly243AspfsTer24	p.G243Dfs*24	ENST00000369448	NM_017709.3	242	Ggg/gg																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108213958	108213959	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	60	295	0	ENST00000278616.4:c.8283_8284del	p.Gln2762AlafsTer6	p.Q2762Afs*6	ENST00000278616	NM_000051.3	2760	CTc/c																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65330629	65330630	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	62	291	0	ENST00000342505.4:c.1016dupA	p.Asn339LysfsTer2	p.N339Kfs*2	ENST00000342505	NM_002227.2	339	aat/aaAt																																													NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49444378	49444378	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	40	331	1	ENST00000301067.7:c.2993del	p.Pro998LeufsTer2	p.P998Lfs*2	ENST00000301067	NM_003482.3	998	cCt/ct																																													NEWRECORD																																		
FANCC	2176	MSKCC	GRCh37	9	97934431	97934432	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	33	271	0	ENST00000289081.3:c.346-3dup		p.X116_splice	ENST00000289081	NM_000136.2	116																																														NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118344955	118344955	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	79	327	0	ENST00000534358.1:c.3086delA	p.Lys1029ArgfsTer65	p.K1029Rfs*65	ENST00000534358	NM_005933.3	1027	ctA/ct																																													NEWRECORD																																		
MDM2	4193	MSKCC	GRCh37	12	69233090	69233090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	81	361	0	ENST00000462284.1:c.961delC	p.Leu321PhefsTer52	p.L321Ffs*52	ENST00000462284	NM_002392.5	319	Ccc/cc																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3817720	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	221	481	0	ENST00000262367.5:c.3250dupA	p.Ile1084AsnfsTer3	p.I1084Nfs*3	ENST00000262367	NM_004380.2	1084	atc/aAtc																																													NEWRECORD																																		
FLT1	2321	MSKCC	GRCh37	13	29005310	29005311	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	71	352	0	ENST00000282397.4:c.950_951delinsAT	p.Pro317His	p.P317H	ENST00000282397	NM_002019.4	317	cCA/cAT																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	49	460	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	27	286	0				ENST00000310581	NM_198253.2																																															NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70333850	70333850	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	41	528	2	ENST00000373644.4:c.1755G>T	p.Lys585Asn	p.K585N	ENST00000373644	NM_030625.2	585	aaG/aaT																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18650633	18650633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	59	516	0	ENST00000266497.5:c.2844G>T	p.Leu948Phe	p.L948F	ENST00000266497		948	ttG/ttT																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27093012	27093012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	51	746	0	ENST00000324856.7:c.2943G>A	p.Met981Ile	p.M981I	ENST00000324856	NM_006015.4	981	atG/atA																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27097721	27097721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	42	671	0	ENST00000324856.7:c.3310G>A	p.Glu1104Lys	p.E1104K	ENST00000324856	NM_006015.4	1104	Gaa/Aaa																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25466851	25466851	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	19	480	0	ENST00000264709.3:c.1852G>A	p.Asp618Asn	p.D618N	ENST00000264709	NM_175629.2	618	Gac/Aac																																													NEWRECORD																																		
INPP4A	3631	MSKCC	GRCh37	2	99181106	99181106	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	19	481	0	ENST00000074304.5:c.2047A>T	p.Thr683Ser	p.T683S	ENST00000074304	NM_001134224.1	683	Acc/Tcc																																													NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49939884	49939884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	32	793	1	ENST00000296474.3:c.1159G>A	p.Glu387Lys	p.E387K	ENST00000296474	NM_002447.2	387	Gaa/Aaa																																													NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66280109	66280109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	59	471	0	ENST00000273854.3:c.1580C>A	p.Ala527Glu	p.A527E	ENST00000273854	NM_004439.5	527	gCa/gAa																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153258956	153258956	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	72	572	0	ENST00000281708.4:c.859G>C	p.Glu287Gln	p.E287Q	ENST00000281708	NM_033632.3	287	Gag/Cag																																													NEWRECORD																																		
CDKN1A	1026	MSKCC	GRCh37	6	36653556	36653556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	34	559	0	ENST00000244741.5:c.474C>G	p.Ile158Met	p.I158M	ENST00000244741	NM_000389.4	158	atC/atG																																													NEWRECORD																																		
PIM1	5292	MSKCC	GRCh37	6	37140870	37140870	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	22	657	0	ENST00000373509.5:c.706G>T	p.Val236Leu	p.V236L	ENST00000373509	NM_002648.3	236	Gtg/Ttg																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151949166	151949166	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	59	442	0	ENST00000262189.6:c.1479C>A	p.His493Gln	p.H493Q	ENST00000262189	NM_170606.2	493	caC/caA																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98248124	98248124	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	24	493	0	ENST00000331920.6:c.427A>T	p.Thr143Ser	p.T143S	ENST00000331920	NM_000264.3	143	Act/Tct																																													NEWRECORD																																		
BRIP1	83990	MSKCC	GRCh37	17	59886090	59886090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	40	422	0	ENST00000259008.2:c.656G>T	p.Cys219Phe	p.C219F	ENST00000259008	NM_032043.2	219	tGt/tTt																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1221975	1221975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	25	623	0	ENST00000326873.7:c.890G>A	p.Arg297Lys	p.R297K	ENST00000326873	NM_000455.4	297	aGg/aAg																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153247345	153247346	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	70	443	0	ENST00000281708.4:c.1456dup	p.Trp486LeufsTer4	p.W486Lfs*4	ENST00000281708	NM_033632.3	486	tgg/tTgg																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	177	445	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37881414	37881414	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1131692237		P-0010655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	371	405	0	ENST00000269571.5:c.2606T>G	p.Leu869Arg	p.L869R	ENST00000269571		869	cTg/cGg																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98238378	98238378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	144	458	0	ENST00000331920.6:c.1666G>A	p.Val556Ile	p.V556I	ENST00000331920	NM_000264.3	556	Gtc/Atc																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68835650	68835650	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	251	689	0	ENST00000261769.5:c.242del	p.Gly81ValfsTer2	p.G81Vfs*2	ENST00000261769	NM_004360.3	81	Ggt/gt																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115112434	115112435	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	170	346	0	ENST00000257566.3:c.1305dup	p.Arg436ThrfsTer3	p.R436Tfs*3	ENST00000257566	NM_016569.3	435	-/A																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0011545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	152	354	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																													NEWRECORD																																		
FGFR1	2260	MSKCC	GRCh37	8	38279368	38279368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	261	546	2	ENST00000425967.3:c.1121C>T	p.Ala374Val	p.A374V	ENST00000425967	NM_001174067.1	374	gCg/gTg																																													NEWRECORD																																		
CDK6	1021	MSKCC	GRCh37	7	92244566	92244566	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	29	299	0	ENST00000265734.4:c.869C>G	p.Ser290Cys	p.S290C	ENST00000265734	NM_001259.6	290	tCt/tGt																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99467792	99467792	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	106	419	0	ENST00000268035.6:c.2661G>C	p.Lys887Asn	p.K887N	ENST00000268035	NM_000875.3	887	aaG/aaC																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41199719	41199719	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0011545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	415	501	1	ENST00000357654.3:c.5408G>T	p.Gly1803Val	p.G1803V	ENST00000357654	NM_007294.3	1803	gGt/gTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578196	7578197	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCACCACACTAT			P-0011545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	286	562	0	ENST00000269305.4:c.641_652dup	p.Val217_Val218insAspSerValVal	p.V217_V218insDSVV	ENST00000269305	NM_001126112.2	218	gtg/gATAGTGTGGTGGtg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0013219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	367	689	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																													NEWRECORD																																		
FLT3	2322	MSKCC	GRCh37	13	28609721	28609721	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	238	903	0	ENST00000241453.7:c.1508T>G	p.Met503Arg	p.M503R	ENST00000241453	NM_004119.2	503	aTg/aGg																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89624289	89624290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GACTT			P-0013219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	293	405	0	ENST00000371953.3:c.64_68dup	p.Asp24ThrfsTer2	p.D24Tfs*2	ENST00000371953	NM_000314.4	21	-/GACTT																																													NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198266713	198266713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776846119		P-0001532-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			734	463	291	1	ENST00000335508.6:c.2219G>A	p.Gly740Glu	p.G740E	ENST00000335508	NM_012433.2	740	gGa/gAa																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108137962	108137962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001532-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			760	496	339	0	ENST00000278616.4:c.2531G>T	p.Gly844Val	p.G844V	ENST00000278616	NM_000051.3	844	gGa/gTa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	114	378	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0009848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	93	403	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0012788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	277	535	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579722	7579722	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0012788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	89	606	0	ENST00000269305.4:c.75-1G>T		p.X25_splice	ENST00000269305	NM_001126112.2	25																																														NEWRECORD																																		
TCF3	6929	MSKCC	GRCh37	19	1612283	1612283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1084	99	874	0	ENST00000344749.5:c.1736C>T	p.Ser579Leu	p.S579L	ENST00000344749	NM_001136139.2	579	tCg/tTg																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0000704-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			91	130	123	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
PMS1	5378	MSKCC	GRCh37	2	190719433	190719433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000704-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	107	221	0	ENST00000441310.2:c.1435G>T	p.Gly479Trp	p.G479W	ENST00000441310	NM_000534.4	479	Ggg/Tgg																																													NEWRECORD																																		
MDC1	9656	MSKCC	GRCh37	6	30681049	30681049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000704-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			252	118	283	0	ENST00000376406.3:c.670G>A	p.Glu224Lys	p.E224K	ENST00000376406	NM_014641.2	224	Gaa/Aaa																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117710552	117710552	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000704-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			688	91	192	0	ENST00000368508.3:c.1720C>G	p.Leu574Val	p.L574V	ENST00000368508	NM_002944.2	574	Ctt/Gtt																																													NEWRECORD																																		
FGFR1	2260	MSKCC	GRCh37	8	38287437	38287437	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000704-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			383	101	243	0	ENST00000425967.3:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000425967	NM_001174067.1	74	Gag/Cag																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89692790	89692790	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000704-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	108	180	0	ENST00000371953.3:c.274G>C	p.Asp92His	p.D92H	ENST00000371953	NM_000314.4	92	Gac/Cac																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49426751	49426751	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000704-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	73	154	0	ENST00000301067.7:c.11737C>T	p.Gln3913Ter	p.Q3913*	ENST00000301067	NM_003482.3	3913	Cag/Tag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0000704-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			116	97	253	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40770633	40770633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000704-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			231	112	205	1	ENST00000373198.4:c.2749G>A	p.Glu917Lys	p.E917K	ENST00000373198	NM_133170.3	917	Gag/Aag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0004811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	399	418	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0004811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	213	388	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7574002	7574002	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	400	477	0	ENST00000269305.4:c.1025G>C	p.Arg342Pro	p.R342P	ENST00000269305	NM_001126112.2	342	cGa/cCa																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29546036	29546037	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0003528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	192	311	1	ENST00000358273.4:c.1541_1542delAG	p.Gln514ArgfsTer43	p.Q514Rfs*43	ENST00000358273	NM_001042492.2	514	cAG/c																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0013759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	161	641	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0013337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	48	451	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	26	404	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																													NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106508805	106508805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	84	480	1	ENST00000359195.3:c.799G>A	p.Glu267Lys	p.E267K	ENST00000359195	NM_002649.2	267	Gaa/Aaa																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	66	614	4	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																													NEWRECORD																																		
BIRC3	330	MSKCC	GRCh37	11	102195488	102195488	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1310	71	946	0	ENST00000263464.3:c.248C>G	p.Thr83Ser	p.T83S	ENST00000263464	NM_001165.4	83	aCt/aGt																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118392718	118392718	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	68	599	0	ENST00000534358.1:c.11750A>G	p.Tyr3917Cys	p.Y3917C	ENST00000534358	NM_005933.3	3917	tAt/tGt																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56490853	56490853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	80	573	0	ENST00000267101.3:c.2299G>A	p.Asp767Asn	p.D767N	ENST00000267101	NM_001982.3	767	Gac/Aac																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	115	606	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																														NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48941657	48941657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	232	716	0	ENST00000267163.4:c.967G>T	p.Glu323Ter	p.E323*	ENST00000267163	NM_000321.2	323	Gaa/Taa																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153332857	153332857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	48	804	0	ENST00000281708.4:c.99G>A	p.Met33Ile	p.M33I	ENST00000281708	NM_033632.3	33	atG/atA																																													NEWRECORD																																		
RAD21	5885	MSKCC	GRCh37	8	117878937	117878937	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1170	206	1199	0	ENST00000297338.2:c.32G>C	p.Arg11Thr	p.R11T	ENST00000297338	NM_006265.2	11	aGa/aCa																																													NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98229487	98229487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	88	1000	0	ENST00000331920.6:c.2471G>A	p.Arg824Lys	p.R824K	ENST00000331920	NM_000264.3	824	aGg/aAg																																													NEWRECORD																																		
EGFL7	51162	MSKCC	GRCh37	9	139566418	139566418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	44	559	0	ENST00000308874.7:c.677C>T	p.Ser226Leu	p.S226L	ENST00000308874		226	tCg/tTg																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70333845	70333845	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	58	830	0	ENST00000373644.4:c.1750G>C	p.Glu584Gln	p.E584Q	ENST00000373644	NM_030625.2	584	Gaa/Caa																																													NEWRECORD																																		
MYOD1	4654	MSKCC	GRCh37	11	17741558	17741558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	44	371	0	ENST00000250003.3:c.229G>A	p.Glu77Lys	p.E77K	ENST00000250003	NM_002478.4	77	Gag/Aag																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32911658	32911658	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1422	298	1427	1	ENST00000380152.3:c.3166C>G	p.Gln1056Glu	p.Q1056E	ENST00000380152		1056	Caa/Gaa																																													NEWRECORD																																		
NFKBIA	4792	MSKCC	GRCh37	14	35873835	35873835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	56	414	0	ENST00000216797.5:c.16G>A	p.Glu6Lys	p.E6K	ENST00000216797	NM_020529.2	6	Gag/Aag																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67663362	67663362	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	51	754	0	ENST00000264010.4:c.1763G>C	p.Gly588Ala	p.G588A	ENST00000264010	NM_006565.3	588	gGa/gCa																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29490348	29490348	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	91	844	0	ENST00000358273.4:c.433C>G	p.Leu145Val	p.L145V	ENST00000358273	NM_001042492.2	145	Ctc/Gtc																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40730799	40730799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	61	616	0	ENST00000373198.4:c.3736G>A	p.Glu1246Lys	p.E1246K	ENST00000373198	NM_133170.3	1246	Gaa/Aaa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0003063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	271	414	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180048116	180048116	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	114	344	0	ENST00000261937.6:c.2157G>C	p.Glu719Asp	p.E719D	ENST00000261937	NM_182925.4	719	gaG/gaC																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41548222	41548222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	130	284	0	ENST00000263253.7:c.3010G>C	p.Asp1004His	p.D1004H	ENST00000263253	NM_001429.3	1004	Gac/Cac																																													NEWRECORD																																		
CDC73	79577	MSKCC	GRCh37	1	193202134	193202134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	41	273	0	ENST00000367435.3:c.1166C>T	p.Ser389Leu	p.S389L	ENST00000367435	NM_024529.4	389	tCa/tTa																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48951171	48951171	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0014906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	44	432	1	ENST00000267163.4:c.1332+1G>T		p.X444_splice	ENST00000267163	NM_000321.2	444																																														NEWRECORD																																		
BCL6	604	MSKCC	GRCh37	3	187447079	187447079	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1156	80	790	0	ENST00000232014.4:c.1114G>T	p.Ala372Ser	p.A372S	ENST00000232014	NM_001130845.1	372	Gcc/Tcc																																													NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116397489	116397489	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0004878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1165	100	337	0	ENST00000397752.3:c.1863-2A>G		p.X621_splice	ENST00000397752	NM_000245.2	621																																														NEWRECORD																																		
FUBP1	8880	MSKCC	GRCh37	1	78420999	78420999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	59	210	1	ENST00000370768.2:c.1721C>T	p.Pro574Leu	p.P574L	ENST00000370768	NM_003902.3	574	cCa/cTa																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604747	48604747	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	36	296	0	ENST00000342988.3:c.1569C>G	p.Cys523Trp	p.C523W	ENST00000342988	NM_005359.5	523	tgC/tgG																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5212043	5212043	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	66	470	0	ENST00000357368.4:c.4988C>G	p.Ala1663Gly	p.A1663G	ENST00000357368	NM_002850.3	1663	gCc/gGc																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40911151	40911151	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	58	344	0	ENST00000373198.4:c.2154C>A	p.Asn718Lys	p.N718K	ENST00000373198	NM_133170.3	718	aaC/aaA																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061190	38061190	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	59	241	0	ENST00000250448.2:c.799A>C	p.Lys267Gln	p.K267Q	ENST00000250448	NM_004496.3	267	Aag/Cag																																													NEWRECORD																																		
TMPRSS2	7113	MSKCC	GRCh37	21	42839743	42839743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	157	441	0	ENST00000398585.3:c.1496G>A	p.Gly499Asp	p.G499D	ENST00000398585	NM_001135099.1	499	gGt/gAt																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0008599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	79	333	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0008599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	26	207	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149501595	149501595	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	32	192	0	ENST00000261799.4:c.2192C>A	p.Ser731Tyr	p.S731Y	ENST00000261799	NM_002609.3	731	tCc/tAc																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0008601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	323	417	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0008601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1044	419	623	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55210075	55210075	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	241	596	0	ENST00000275493.2:c.185T>G	p.Leu62Arg	p.L62R	ENST00000275493	NM_005228.3	62	cTt/cGt																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42793127	42793127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	355	478	0	ENST00000575354.2:c.1019G>A	p.Arg340Gln	p.R340Q	ENST00000575354	NM_015125.3	340	cGg/cAg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0008600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	258	542	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0008600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	243	399	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022403	31022425	+	frameshift_variant	Frame_Shift_Del	DEL	CACCACTGCCATAGAGAGGCGGC	CACCACTGCCATAGAGAGGCGGC	-			P-0008600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	92	186	0	ENST00000375687.4:c.1900_1922delAGAGAGGCGGCCACCACTGCCAT	p.Glu635ArgfsTer15	p.E635Rfs*15	ENST00000375687	NM_015338.5	630	CACCACTGCCATAGAGAGGCGGCc/c																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29508741	29508741	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	247	544	1	ENST00000358273.4:c.668G>A	p.Trp223Ter	p.W223*	ENST00000358273	NM_001042492.2	223	tGg/tAg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578181	7578181	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	470	539	0	ENST00000269305.4:c.668delC	p.Pro223LeufsTer24	p.P223Lfs*24	ENST00000269305	NM_001126112.2	223	cCt/ct																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0008579-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	62	385	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0008579-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	86	194	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																													NEWRECORD																																		
MAP2K1	5604	MSKCC	GRCh37	15	66727453	66727453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008579-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	41	317	0	ENST00000307102.5:c.169A>G	p.Lys57Glu	p.K57E	ENST00000307102	NM_002755.3	57	Aag/Gag																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	10273974	10273974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008579-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	37	425	0	ENST00000330684.3:c.295G>A	p.Val99Met	p.V99M	ENST00000330684	NM_001134407.1	99	Gtg/Atg																																													NEWRECORD																																		
MAP2K4	6416	MSKCC	GRCh37	17	12028612	12028612	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008579-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	48	312	0	ENST00000353533.5:c.815C>T	p.Pro272Leu	p.P272L	ENST00000353533	NM_003010.3	272	cCt/cTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577581	7577595	+	inframe_deletion	In_Frame_Del	DEL	AGTGGATGGTGGTAC	AGTGGATGGTGGTAC	-			P-0008579-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	25	242	0	ENST00000269305.4:c.686_700delGTACCACCATCCACT	p.Cys229_His233del	p.C229_H233del	ENST00000269305	NM_001126112.2	229	tGTACCACCATCCACTac/tac																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	22	554	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	78	586	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			840	210	544	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag																																													NEWRECORD																																		
RAD54L	8438	MSKCC	GRCh37	1	46743931	46743931	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			857	49	408	0	ENST00000371975.4:c.2221G>T	p.Glu741Ter	p.E741*	ENST00000371975	NM_003579.3	741	Gag/Tag																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7576853	7576853	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs11575996		P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			861	231	473	0	ENST00000269305.4:c.993G>T	p.Gln331His	p.Q331H	ENST00000269305	NM_001126112.2	331	caG/caT																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115120795	115120795	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			751	63	386	1	ENST00000257566.3:c.211delG	p.Ala71ArgfsTer17	p.A71Rfs*17	ENST00000257566	NM_016569.3	71	Gcg/cg																																													NEWRECORD																																		
ERRFI1	54206	MSKCC	GRCh37	1	8074091	8074091	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			598	69	302	0	ENST00000377482.5:c.568G>T	p.Asp190Tyr	p.D190Y	ENST00000377482	NM_018948.3	190	Gat/Tat																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11303199	11303199	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			983	136	540	2	ENST00000361445.4:c.1384G>T	p.Ala462Ser	p.A462S	ENST00000361445	NM_004958.3	462	Gcc/Tcc																																													NEWRECORD																																		
FUBP1	8880	MSKCC	GRCh37	1	78430784	78430784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			981	138	431	0	ENST00000370768.2:c.605G>T	p.Gly202Val	p.G202V	ENST00000370768	NM_003902.3	202	gGa/gTa																																													NEWRECORD																																		
CSDE1	7812	MSKCC	GRCh37	1	115277140	115277140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			845	109	359	0	ENST00000438362.2:c.643G>A	p.Gly215Ser	p.G215S	ENST00000438362	NM_001242891.1	215	Ggt/Agt																																													NEWRECORD																																		
VTCN1	79679	MSKCC	GRCh37	1	117712729	117712729	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			945	139	488	0	ENST00000369458.3:c.97G>T	p.Gly33Trp	p.G33W	ENST00000369458	NM_024626.3	33	Ggg/Tgg																																													NEWRECORD																																		
ELF3	1999	MSKCC	GRCh37	1	201981833	201981833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1133	180	618	0	ENST00000359651.3:c.545delG	p.Gly182AlafsTer72	p.G182Afs*72	ENST00000359651		182	Ggc/gc																																													NEWRECORD																																		
HIST3H3	8290	MSKCC	GRCh37	1	228612642	228612642	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			932	143	492	2	ENST00000366696.1:c.385C>A	p.Arg129Ser	p.R129S	ENST00000366696	NM_003493.2	129	Cgc/Agc																																													NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89725073	89725073	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	62	188	0	ENST00000371953.3:c.1056G>T	p.Glu352Asp	p.E352D	ENST00000371953	NM_000314.4	352	gaG/gaT																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64575400	64575400	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	77	520	0	ENST00000337652.1:c.632G>C	p.Arg211Pro	p.R211P	ENST00000337652	NM_130803.2	211	cGc/cCc																																													NEWRECORD																																		
INPPL1	3636	MSKCC	GRCh37	11	71944508	71944508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	80	636	0	ENST00000298229.2:c.2064G>T	p.Trp688Cys	p.W688C	ENST00000298229	NM_001567.3	688	tgG/tgT																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108175479	108175479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			742	88	410	1	ENST00000278616.4:c.5574G>C	p.Trp1858Cys	p.W1858C	ENST00000278616	NM_000051.3	1858	tgG/tgC																																													NEWRECORD																																		
MLL	4297	MSKCC	GRCh37	11	118342648	118342648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			667	83	313	0	ENST00000534358.1:c.774G>T	p.Arg258Ser	p.R258S	ENST00000534358	NM_005933.3	258	agG/agT																																													NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18435295	18435295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			759	131	361	0	ENST00000266497.5:c.280C>A	p.Arg94Ser	p.R94S	ENST00000266497		94	Cgt/Agt																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49420432	49420432	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			951	136	494	1	ENST00000301067.7:c.15317G>T	p.Arg5106Leu	p.R5106L	ENST00000301067	NM_003482.3	5106	cGc/cTc																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49446479	49446479	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			719	45	353	0	ENST00000301067.7:c.1126G>T	p.Glu376Ter	p.E376*	ENST00000301067	NM_003482.3	376	Gag/Tag																																													NEWRECORD																																		
TBX3	6926	MSKCC	GRCh37	12	115109980	115109980	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1231	198	820	1	ENST00000257566.3:c.1898C>A	p.Thr633Asn	p.T633N	ENST00000257566	NM_016569.3	633	aCc/aAc																																													NEWRECORD																																		
POLE	5426	MSKCC	GRCh37	12	133219159	133219159	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	172	635	0	ENST00000320574.5:c.4885G>C	p.Ala1629Pro	p.A1629P	ENST00000320574	NM_006231.2	1629	Gcc/Ccc																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32912475	32912475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			823	58	384	0	ENST00000380152.3:c.3983G>T	p.Ser1328Ile	p.S1328I	ENST00000380152		1328	aGt/aTt																																													NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110434614	110434614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	89	612	0	ENST00000375856.3:c.3787G>A	p.Gly1263Arg	p.G1263R	ENST00000375856	NM_003749.2	1263	Ggg/Agg																																													NEWRECORD																																		
NTRK3	4916	MSKCC	GRCh37	15	88420291	88420291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			890	123	445	0	ENST00000360948.2:c.2395G>T	p.Val799Leu	p.V799L	ENST00000360948	NM_001012338.2	799	Gtg/Ttg																																													NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	339441	339441	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1201	66	523	0	ENST00000262320.3:c.2461A>T	p.Arg821Ter	p.R821*	ENST00000262320	NM_003502.3	821	Aga/Tga																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3817818	3817818	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1397	80	642	0	ENST00000262367.5:c.3153G>C	p.Lys1051Asn	p.K1051N	ENST00000262367	NM_004380.2	1051	aaG/aaC																																													NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3824597	3824597	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			879	61	393	0	ENST00000262367.5:c.2256G>C	p.Gln752His	p.Q752H	ENST00000262367	NM_004380.2	752	caG/caC																																													NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9858241	9858241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			785	53	339	0	ENST00000330684.3:c.3160G>A	p.Glu1054Lys	p.E1054K	ENST00000330684	NM_001134407.1	1054	Gaa/Aaa																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67670670	67670670	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	139	591	0	ENST00000264010.4:c.1915C>A	p.Gln639Lys	p.Q639K	ENST00000264010	NM_006565.3	639	Cag/Aag																																													NEWRECORD																																		
PMAIP1	5366	MSKCC	GRCh37	18	57567433	57567433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			890	66	474	0	ENST00000316660.6:c.24G>T	p.Lys8Asn	p.K8N	ENST00000316660	NM_021127.2	8	aaG/aaT																																													NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2164229	2164229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			998	67	544	0	ENST00000398665.3:c.46G>A	p.Glu16Lys	p.E16K	ENST00000398665	NM_032482.2	16	Gag/Aag																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5218503	5218503	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1195	169	681	1	ENST00000357368.4:c.3976A>T	p.Asn1326Tyr	p.N1326Y	ENST00000357368	NM_002850.3	1326	Aac/Tac																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5221015	5221015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			690	150	390	0	ENST00000357368.4:c.3451G>A	p.Val1151Ile	p.V1151I	ENST00000357368	NM_002850.3	1151	Gtc/Atc																																													NEWRECORD																																		
MLL4	9757	MSKCC	GRCh37	19	36211243	36211243	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1759	366	988	0	ENST00000222270.7:c.994C>A	p.His332Asn	p.H332N	ENST00000222270	NM_014727.1	332	Cat/Aat																																													NEWRECORD																																		
MLL4	9757	MSKCC	GRCh37	19	36221331	36221331	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1486	115	690	0	ENST00000222270.7:c.5165G>T	p.Gly1722Val	p.G1722V	ENST00000222270	NM_014727.1	1722	gGg/gTg																																													NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212426687	212426687	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			971	141	570	0	ENST00000342788.4:c.2428G>C	p.Glu810Gln	p.E810Q	ENST00000342788	NM_005235.2	810	Gag/Cag																																													NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215595149	215595149	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			862	113	420	0	ENST00000260947.4:c.1987A>C	p.Asn663His	p.N663H	ENST00000260947	NM_000465.2	663	Aac/Cac																																													NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227660316	227660316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			588	35	305	0	ENST00000305123.5:c.3139C>A	p.Pro1047Thr	p.P1047T	ENST00000305123	NM_005544.2	1047	Cct/Act																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9520152	9520152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			654	47	350	0	ENST00000353224.5:c.2117C>A	p.Pro706Gln	p.P706Q	ENST00000353224	NM_177990.2	706	cCg/cAg																																													NEWRECORD																																		
NCOA3	8202	MSKCC	GRCh37	20	46264944	46264944	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			849	123	432	2	ENST00000371998.3:c.1814G>T	p.Gly605Val	p.G605V	ENST00000371998		605	gGg/gTg																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52676041	52676041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	139	491	0	ENST00000394830.3:c.1016G>T	p.Gly339Val	p.G339V	ENST00000394830	NM_018313.4	339	gGa/gTa																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134851784	134851784	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	149	565	0	ENST00000398015.3:c.1190G>C	p.Trp397Ser	p.W397S	ENST00000398015	NM_004441.4	397	tGg/tCg																																													NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134977879	134977879	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			881	125	464	0	ENST00000398015.3:c.2872T>A	p.Leu958Met	p.L958M	ENST00000398015	NM_004441.4	958	Ttg/Atg																																													NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189612083	189612083	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	137	500	0	ENST00000264731.3:c.1835C>A	p.Ser612Tyr	p.S612Y	ENST00000264731	NM_003722.4	612	tCc/tAc																																													NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1808913	1808913	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1140	63	632	0	ENST00000260795.2:c.2345C>G	p.Ser782Cys	p.S782C	ENST00000260795		782	tCc/tGc																																													NEWRECORD																																		
WHSC1	7468	MSKCC	GRCh37	4	1920179	1920179	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	84	707	1	ENST00000382891.5:c.1239G>C	p.Glu413Asp	p.E413D	ENST00000382891	NM_133335.3	413	gaG/gaC																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55129917	55129917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	123	581	2	ENST00000257290.5:c.451C>A	p.Arg151Ser	p.R151S	ENST00000257290	NM_006206.4	151	Cgc/Agc																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55129957	55129957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			993	120	661	1	ENST00000257290.5:c.491G>A	p.Ser164Asn	p.S164N	ENST00000257290	NM_006206.4	164	aGt/aAt																																													NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55960973	55960973	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			663	52	321	0	ENST00000263923.4:c.2967G>T	p.Glu989Asp	p.E989D	ENST00000263923	NM_002253.2	989	gaG/gaT																																													NEWRECORD																																		
EIF4E	1977	MSKCC	GRCh37	4	99802246	99802246	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			459	34	221	0	ENST00000280892.6:c.647G>T	p.Gly216Val	p.G216V	ENST00000280892	NM_001130678.1	216	gGt/gTt																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143067094	143067094	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			802	119	443	0	ENST00000262992.4:c.1619A>T	p.Asp540Val	p.D540V	ENST00000262992	NM_001101669.1	540	gAc/gTc																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187540001	187540001	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			658	56	343	0	ENST00000441802.2:c.7739G>C	p.Cys2580Ser	p.C2580S	ENST00000441802	NM_005245.3	2580	tGc/tCc																																													NEWRECORD																																		
PDGFRB	5159	MSKCC	GRCh37	5	149501449	149501449	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	126	582	0	ENST00000261799.4:c.2338C>A	p.Pro780Thr	p.P780T	ENST00000261799	NM_002609.3	780	Ccc/Acc																																													NEWRECORD																																		
TAP2	6891	MSKCC	GRCh37	6	32805656	32805656	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1214	92	652	0	ENST00000374899.4:c.355C>G	p.Leu119Val	p.L119V	ENST00000374899	NM_018833.2	119	Ctg/Gtg																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157099233	157099233	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			968	62	476	0	ENST00000346085.5:c.170C>G	p.Ser57Trp	p.S57W	ENST00000346085	NM_020732.3	57	tCg/tGg																																													NEWRECORD																																		
RAC1	5879	MSKCC	GRCh37	7	6431634	6431634	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			779	115	390	1	ENST00000356142.4:c.187G>T	p.Asp63Tyr	p.D63Y	ENST00000356142	NM_018890.3	63	Gat/Tat																																													NEWRECORD																																		
INHBA	3624	MSKCC	GRCh37	7	41729265	41729265	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			715	94	352	0	ENST00000242208.4:c.1264delG	p.Glu422SerfsTer26	p.E422Sfs*26	ENST00000242208	NM_002192.2	422	Gag/ag																																													NEWRECORD																																		
INHBA	3624	MSKCC	GRCh37	7	41729332	41729332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			904	107	468	0	ENST00000242208.4:c.1197G>T	p.Met399Ile	p.M399I	ENST00000242208	NM_002192.2	399	atG/atT																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81392055	81392055	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			827	105	368	0	ENST00000222390.5:c.222T>A	p.Cys74Ter	p.C74*	ENST00000222390	NM_000601.4	74	tgT/tgA																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140434571	140434571	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			350	21	134	0	ENST00000288602.6:c.2128-1G>C		p.X710_splice	ENST00000288602	NM_004333.4	710																																														NEWRECORD																																		
JAK2	3717	MSKCC	GRCh37	9	5089819	5089819	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			775	105	373	0	ENST00000381652.3:c.2717A>G	p.Gln906Arg	p.Q906R	ENST00000381652	NM_004972.3	906	cAg/cGg																																													NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8504371	8504371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			895	201	504	0	ENST00000356435.5:c.1712G>T	p.Arg571Met	p.R571M	ENST00000356435		571	aGg/aTg																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53246458	53246458	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			759	133	505	0	ENST00000375401.3:c.524A>T	p.Gln175Leu	p.Q175L	ENST00000375401	NM_004187.3	175	cAg/cTg																																													NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70333719	70333719	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			997	73	441	0	ENST00000373644.4:c.1624G>C	p.Asp542His	p.D542H	ENST00000373644	NM_030625.2	542	Gac/Cac																																													NEWRECORD																																		
CDK8	1024	MSKCC	GRCh37	13	26975602	26975602	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	26	210	0	ENST00000381527.3:c.1111-1G>T		p.X371_splice	ENST00000381527	NM_001260.1	371																																														NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32907118	32907118	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			843	73	399	0	ENST00000380152.3:c.1503C>G	p.Ile501Met	p.I501M	ENST00000380152		501	atC/atG																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32945213	32945213	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	58	458	0	ENST00000380152.3:c.8608C>T	p.Gln2870Ter	p.Q2870*	ENST00000380152		2870	Cag/Tag																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32954267	32954267	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			894	52	428	2	ENST00000380152.3:c.9241G>T	p.Val3081Phe	p.V3081F	ENST00000380152		3081	Gtt/Ttt																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41244684	41244684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1391	84	668	1	ENST00000357654.3:c.2864C>T	p.Ser955Leu	p.S955L	ENST00000357654	NM_007294.3	955	tCa/tTa																																													NEWRECORD																																		
BRD4	23476	MSKCC	GRCh37	19	15375543	15375543	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1312	205	828	0	ENST00000263377.2:c.884C>G	p.Thr295Ser	p.T295S	ENST00000263377	NM_058243.2	295	aCc/aGc																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89259527	89259527	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			839	46	405	0	ENST00000336596.2:c.671T>C	p.Val224Ala	p.V224A	ENST00000336596	NM_005233.5	224	gTg/gCg																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143159157	143159157	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			607	44	279	2	ENST00000262992.4:c.696G>T	p.Lys232Asn	p.K232N	ENST00000262992	NM_001101669.1	232	aaG/aaT																																													NEWRECORD																																		
PARK2	5071	MSKCC	GRCh37	6	162622231	162622231	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			811	63	376	0	ENST00000366898.1:c.466A>G	p.Arg156Gly	p.R156G	ENST00000366898	NM_004562.2	156	Aga/Gga																																													NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0010681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1523	140	468	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0010681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1246	88	433	2	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																													NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11138521	11138521	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1340	75	596	1	ENST00000344626.4:c.3277C>T	p.Arg1093Ter	p.R1093*	ENST00000344626	NM_003072.3	1093	Cga/Tga																																													NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11307983	11307983	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1262	84	508	0	ENST00000361445.4:c.1009A>T	p.Ser337Cys	p.S337C	ENST00000361445	NM_004958.3	337	Agc/Tgc																																													NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215646166	215646166	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	37	256	0	ENST00000260947.4:c.432A>C	p.Lys144Asn	p.K144N	ENST00000260947	NM_000465.2	144	aaA/aaC																																													NEWRECORD																																		
VEGFA	7422	MSKCC	GRCh37	6	43745244	43745244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2518	243	867	2	ENST00000523873.1:c.157C>T	p.His53Tyr	p.H53Y	ENST00000523873		53	Cat/Tat																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	176	441	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0014997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	299	608	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																													NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803416	1803416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	123	836	1	ENST00000260795.2:c.685G>A	p.Val229Ile	p.V229I	ENST00000260795		229	Gtc/Atc																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151843796	151843796	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	172	411	0	ENST00000262189.6:c.13919C>G	p.Pro4640Arg	p.P4640R	ENST00000262189	NM_170606.2	4640	cCt/cGt																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46245033	46245033	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	196	817	0	ENST00000334344.6:c.3127C>T	p.Gln1043Ter	p.Q1043*	ENST00000334344	NM_152641.2	1043	Caa/Taa																																													NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143067050	143067050	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	90	774	0	ENST00000262992.4:c.1663A>C	p.Asn555His	p.N555H	ENST00000262992	NM_001101669.1	555	Aac/Cac																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	137	427	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
MPL	4352	MSKCC	GRCh37	1	43803899	43803899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61754776		P-0013567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	111	383	0	ENST00000372470.3:c.209C>T	p.Pro70Leu	p.P70L	ENST00000372470	NM_005373.2	70	cCg/cTg																																													NEWRECORD																																		
KEAP1	9817	MSKCC	GRCh37	19	10602584	10602584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	155	474	1	ENST00000171111.5:c.994G>T	p.Gly332Cys	p.G332C	ENST00000171111	NM_203500.1	332	Ggc/Tgc																																													NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1221303	1221307	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGA	GGCGA	-			P-0013567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	161	628	0	ENST00000326873.7:c.826_830delGGCGA	p.Gly276LeufsTer7	p.G276Lfs*7	ENST00000326873	NM_000455.4	276	GGCGAc/c																																													NEWRECORD																																		
CUL3	8452	MSKCC	GRCh37	2	225368482	225368482	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	160	460	0	ENST00000264414.4:c.1264A>T	p.Met422Leu	p.M422L	ENST00000264414	NM_003590.4	422	Atg/Ttg																																													NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67576823	67576823	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	46	189	0	ENST00000274335.5:c.905A>T	p.Gln302Leu	p.Q302L	ENST00000274335		302	cAg/cTg																																													NEWRECORD																																		
HIST1H3B	8358	MSKCC	GRCh37	6	26032198	26032199	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0013567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	111	723	0	ENST00000244661.2:c.90_91delGC	p.Pro31GlyfsTer67	p.P31Gfs*67	ENST00000244661	NM_003537.3	30	gcGCcg/gccg																																													NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81350155	81350155	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	107	407	0	ENST00000222390.5:c.1177C>G	p.Arg393Gly	p.R393G	ENST00000222390	NM_000601.4	393	Cgt/Ggt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	901	392	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	367	649	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																													NEWRECORD																																		
SUFU	51684	MSKCC	GRCh37	10	104309784	104309784	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1355	558	548	0	ENST00000369902.3:c.375G>C	p.Lys125Asn	p.K125N	ENST00000369902	NM_016169.3	125	aaG/aaC																																													NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215595214	215595214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	181	339	0	ENST00000260947.4:c.1922G>A	p.Arg641Gln	p.R641Q	ENST00000260947	NM_000465.2	641	cGa/cAa																																													NEWRECORD																																		
RAD54L	8438	MSKCC	GRCh37	1	46739698	46740201	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCTCCAAGGGACTCTGCTTTCTTGGGTCTTTTTAAAAAAATTTTTATTTTTAATTTTTTTTCCCCCTAATCATTGAAGCTTTATTTTCTTGGGTCTCGAATCCCCCTTCAGGTACTTATACGTCCGCCTGGATGGCACGATGTCCATTAAGAAGCGAGCCAAGGTTGTAGAACGCTTCAATAGTCCATCGGTAAATGCACATCCCCGTCCCCACACCACCAATGCAGTATCATCAGAATTAAGGAATGATAGAGAAGCTATAAGGGGTTACCTTGATTTTTTTTTTTTTTAATTCCCCTAGTGGATATAGTAGGATTTGTCTGGTTGGTGATGGCTGGGCTGGAAACTGACTGTGTGTGTTGGGATTGGCTGGCTGGTGAGCAGATAAACTGGTGGTTTTCACAATTGGTACTGAGTAGTATAGAGGCATGAGGGAGGAGCTGGTTGGGCTGAGCAGGATCCCAGTTTAGGCTATAAGAGGTTCCTTTTCTCCTGTTTCTTCT	CTCTCCAAGGGACTCTGCTTTCTTGGGTCTTTTTAAAAAAATTTTTATTTTTAATTTTTTTTCCCCCTAATCATTGAAGCTTTATTTTCTTGGGTCTCGAATCCCCCTTCAGGTACTTATACGTCCGCCTGGATGGCACGATGTCCATTAAGAAGCGAGCCAAGGTTGTAGAACGCTTCAATAGTCCATCGGTAAATGCACATCCCCGTCCCCACACCACCAATGCAGTATCATCAGAATTAAGGAATGATAGAGAAGCTATAAGGGGTTACCTTGATTTTTTTTTTTTTTAATTCCCCTAGTGGATATAGTAGGATTTGTCTGGTTGGTGATGGCTGGGCTGGAAACTGACTGTGTGTGTTGGGATTGGCTGGCTGGTGAGCAGATAAACTGGTGGTTTTCACAATTGGTACTGAGTAGTATAGAGGCATGAGGGAGGAGCTGGTTGGGCTGAGCAGGATCCCAGTTTAGGCTATAAGAGGTTCCTTTTCTCCTGTTTCTTCT	-			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	70	42	0	ENST00000371975.4:c.1611-110_1690-7delCTCCAAGGGACTCTGCTTTCTTGGGTCTTTTTAAAAAAATTTTTATTTTTAATTTTTTTTCCCCCTAATCATTGAAGCTTTATTTTCTTGGGTCTCGAATCCCCCTTCAGGTACTTATACGTCCGCCTGGATGGCACGATGTCCATTAAGAAGCGAGCCAAGGTTGTAGAACGCTTCAATAGTCCATCGGTAAATGCACATCCCCGTCCCCACACCACCAATGCAGTATCATCAGAATTAAGGAATGATAGAGAAGCTATAAGGGGTTACCTTGATTTTTTTTTTTTTTAATTCCCCTAGTGGATATAGTAGGATTTGTCTGGTTGGTGATGGCTGGGCTGGAAACTGACTGTGTGTGTTGGGATTGGCTGGCTGGTGAGCAGATAAACTGGTGGTTTTCACAATTGGTACTGAGTAGTATAGAGGCATGAGGGAGGAGCTGGTTGGGCTGAGCAGGATCCCAGTTTAGGCTATAAGAGGTTCCTTTTCTCCTGTTTCTTCTCT		p.X537_splice	ENST00000371975	NM_003579.3	537																																														NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70451183	70451183	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1136	569	489	0	ENST00000373644.4:c.6023G>T	p.Gly2008Val	p.G2008V	ENST00000373644	NM_030625.2	2008	gGg/gTg																																													NEWRECORD																																		
MAPK3	5595	MSKCC	GRCh37	16	30129017	30129017	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	308	560	0	ENST00000263025.4:c.749A>G	p.Tyr250Cys	p.Y250C	ENST00000263025	NM_002746.2	250	tAc/tGc																																													NEWRECORD																																		
FANCA	2175	MSKCC	GRCh37	16	89806450	89806450	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	302	563	0	ENST00000389301.3:c.3886G>C	p.Glu1296Gln	p.E1296Q	ENST00000389301	NM_000135.2	1296	Gag/Cag																																													NEWRECORD																																		
BRCA1	672	MSKCC	GRCh37	17	41276110	41276110	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1185	256	394	0	ENST00000357654.3:c.4G>T	p.Asp2Tyr	p.D2Y	ENST00000357654	NM_007294.3	2	Gat/Tat																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78919480	78919480	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	292	573	0	ENST00000306801.3:c.3039G>C	p.Leu1013Phe	p.L1013F	ENST00000306801	NM_020761.2	1013	ttG/ttC																																													NEWRECORD																																		
CTLA4	1493	MSKCC	GRCh37	2	204736142	204736142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	205	313	0	ENST00000302823.3:c.499C>A	p.Leu167Ile	p.L167I	ENST00000302823	NM_005214.4	167	Ctt/Att																																													NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31383257	31383257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	252	491	0	ENST00000328111.2:c.1169C>T	p.Ser390Phe	p.S390F	ENST00000328111	NM_006892.3	390	tCt/tTt																																													NEWRECORD																																		
NCOA3	8202	MSKCC	GRCh37	20	46264656	46264656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	107	196	0	ENST00000371998.3:c.1526C>G	p.Ser509Cys	p.S509C	ENST00000371998		509	tCt/tGt																																													NEWRECORD																																		
NCOA3	8202	MSKCC	GRCh37	20	46265142	46265142	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	161	249	0	ENST00000371998.3:c.2012C>G	p.Ser671Cys	p.S671C	ENST00000371998		671	tCc/tGc																																													NEWRECORD																																		
WWTR1	25937	MSKCC	GRCh37	3	149374909	149374909	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	581	577	0	ENST00000360632.3:c.185C>G	p.Ser62Trp	p.S62W	ENST00000360632	NM_015472.4	62	tCg/tGg																																													NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185155234	185155234	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	139	246	0	ENST00000265026.3:c.476-1G>C		p.X159_splice	ENST00000265026	NM_004721.4	159																																														NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185198315	185198315	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	400	411	1	ENST00000265026.3:c.2797G>A	p.Glu933Lys	p.E933K	ENST00000265026	NM_004721.4	933	Gag/Aag																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187539454	187539454	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	380	318	0	ENST00000441802.2:c.8286G>T	p.Leu2762Phe	p.L2762F	ENST00000441802	NM_005245.3	2762	ttG/ttT																																													NEWRECORD																																		
MSH3	4437	MSKCC	GRCh37	5	80064721	80064721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	214	416	0	ENST00000265081.6:c.2152G>A	p.Glu718Lys	p.E718K	ENST00000265081	NM_002439.4	718	Gaa/Aaa																																													NEWRECORD																																		
PIM1	5292	MSKCC	GRCh37	6	37141772	37141772	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	279	541	0	ENST00000373509.5:c.847G>C	p.Glu283Gln	p.E283Q	ENST00000373509	NM_002648.3	283	Gaa/Caa																																													NEWRECORD																																		
JAK2	3717	MSKCC	GRCh37	9	5080560	5080560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	122	253	0	ENST00000381652.3:c.2311C>T	p.Gln771Ter	p.Q771*	ENST00000381652	NM_004972.3	771	Cag/Tag																																													NEWRECORD																																		
SYK	6850	MSKCC	GRCh37	9	93641218	93641218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	170	327	0	ENST00000375746.1:c.1564G>A	p.Asp522Asn	p.D522N	ENST00000375746	NM_001174167.1	522	Gat/Aat																																													NEWRECORD																																		
KDM5C	8242	MSKCC	GRCh37	X	53222966	53222966	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	391	740	0	ENST00000375401.3:c.4106C>G	p.Ser1369Ter	p.S1369*	ENST00000375401	NM_004187.3	1369	tCa/tGa																																													NEWRECORD																																		
GNAQ	2776	MSKCC	GRCh37	9	80430668	80430668	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	117	536	0	ENST00000286548.4:c.340C>T	p.Arg114Ter	p.R114*	ENST00000286548	NM_002072.3	114	Cga/Tga						NEWRECORD																																																																									
SHQ1	55164	MSKCC	GRCh37	3	72891539	72891539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	85	408	1	ENST00000325599.8:c.223C>T	p.Arg75Cys	p.R75C	ENST00000325599	NM_018130.2	75	Cgc/Tgc						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49434325	49434325	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1698	260	901	0	ENST00000301067.7:c.7228C>T	p.Arg2410Ter	p.R2410*	ENST00000301067	NM_003482.3	2410	Cga/Tga						NEWRECORD																																																																									
RAD54L	8438	MSKCC	GRCh37	1	46736381	46736381	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	139	461	0	ENST00000371975.4:c.1093C>T	p.Arg365Ter	p.R365*	ENST00000371975	NM_003579.3	365	Cga/Tga						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32456255	32456255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1594	170	717	0	ENST00000332351.3:c.637C>T	p.Arg213Cys	p.R213C	ENST00000332351	NM_024426.4	213	Cgc/Tgc						NEWRECORD																																																																									
ACVR1	90	MSKCC	GRCh37	2	158594953	158594953	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs750457181		P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	92	393	0	ENST00000263640.3:c.1394C>T	p.Pro465Leu	p.P465L	ENST00000263640	NM_001105.4	465	cCg/cTg						NEWRECORD																																																																									
NCOA3	8202	MSKCC	GRCh37	20	46276052	46276052	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139321788		P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1266	112	599	2	ENST00000371998.3:c.3488G>A	p.Arg1163Gln	p.R1163Q	ENST00000371998		1163	cGg/cAg						NEWRECORD																																																																									
RHOA	387	MSKCC	GRCh37	3	49397767	49397767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1649	183	656	0	ENST00000418115.1:c.457G>A	p.Ala153Thr	p.A153T	ENST00000418115	NM_001664.2	153	Gct/Act						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89521724	89521725	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	108	418	0	ENST00000336596.2:c.2804_2805del	p.Val935GlyfsTer6	p.V935Gfs*6	ENST00000336596	NM_005233.5	934	gGT/g						NEWRECORD																																																																									
TAP2	6891	MSKCC	GRCh37	6	32798210	32798210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1298	189	668	0	ENST00000374899.4:c.1469C>T	p.Thr490Met	p.T490M	ENST00000374899	NM_018833.2	490	aCg/aTg						NEWRECORD																																																																									
PMS2	5395	MSKCC	GRCh37	7	6042129	6042129	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	45	266	0	ENST00000265849.7:c.492del	p.Thr165HisfsTer36	p.T165Hfs*36	ENST00000265849	NM_000535.5	164	tcC/tc						NEWRECORD																																																																									
PREX2	80243	MSKCC	GRCh37	8	68864648	68864648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	41	171	0	ENST00000288368.4:c.19G>A	p.Gly7Arg	p.G7R	ENST00000288368	NM_024870.2	7	Gga/Aga						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76939412	76939412	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1146	65	611	0	ENST00000373344.5:c.1336G>T	p.Gly446Ter	p.G446*	ENST00000373344	NM_000489.3	446	Gga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	315	309	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52723067	52723067	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770861676		P-0005741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	363	412	0	ENST00000322088.6:c.1252C>T	p.Arg418Trp	p.R418W	ENST00000322088	NM_014225.5	418	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0005741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	429	369	2	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156845890	156845890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1624	420	834	0	ENST00000524377.1:c.1520G>A	p.Arg507His	p.R507H	ENST00000524377	NM_002529.3	507	cGc/cAc						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49416618	49416618	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	180	383	0	ENST00000301067.7:c.16093C>T	p.Gln5365Ter	p.Q5365*	ENST00000301067	NM_003482.3	5365	Cag/Tag						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110436009	110436009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	163	199	0	ENST00000375856.3:c.2392G>A	p.Val798Ile	p.V798I	ENST00000375856	NM_003749.2	798	Gtt/Att						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	403	257	0	ENST00000269305.4:c.770T>G	p.Leu257Arg	p.L257R	ENST00000269305	NM_001126112.2	257	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576885	7576885	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0008552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	244	392	0	ENST00000269305.4:c.961A>T	p.Lys321Ter	p.K321*	ENST00000269305	NM_001126112.2	321	Aaa/Taa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8460504	8460504	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148300682		P-0008552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	160	322	0	ENST00000356435.5:c.3782C>T	p.Thr1261Met	p.T1261M	ENST00000356435		1261	aCg/aTg						NEWRECORD																																																																									
RAD52	5893	MSKCC	GRCh37	12	1025543	1025543	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	299	364	0	ENST00000358495.3:c.832C>T	p.Arg278Ter	p.R278*	ENST00000358495	NM_134424.2	278	Cga/Tga						NEWRECORD																																																																									
MAX	4149	MSKCC	GRCh37	14	65568283	65568283	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	271	248	0	ENST00000358664.4:c.44A>G	p.Gln15Arg	p.Q15R	ENST00000358664	NM_002382.4	15	cAa/cGa						NEWRECORD																																																																									
AURKB	9212	MSKCC	GRCh37	17	8110085	8110085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199630207		P-0008552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	128	188	0	ENST00000585124.1:c.520G>A	p.Glu174Lys	p.E174K	ENST00000585124	NM_004217.3	174	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0003717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	99	313	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266245	41266245	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0003717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	220	280	0	ENST00000349496.5:c.241+1G>T		p.X81_splice	ENST00000349496	NM_001904.3	81							NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55602973	55602973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	83	290	1	ENST00000288135.5:c.2683G>A	p.Ala895Thr	p.A895T	ENST00000288135	NM_000222.2	895	Gca/Aca						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67473615	67473615	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	124	398	0	ENST00000327367.4:c.695G>A	p.Trp232Ter	p.W232*	ENST00000327367	NM_005902.3	232	tGg/tAg						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266002	41266029	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTTCGTATTTATAGCTGATTTGATGGA	GTTTCGTATTTATAGCTGATTTGATGGA	-			P-0003717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	208	268	2	ENST00000349496.5:c.14-12_29del		p.X5_splice	ENST00000349496	NM_001904.3	5							NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187518079	187518079	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000731-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			646	113	468	0	ENST00000441802.2:c.12615G>C	p.Met4205Ile	p.M4205I	ENST00000441802	NM_005245.3	4205	atG/atC						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0000731-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			118	136	208	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31024509	31024509	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000731-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			457	94	295	0	ENST00000375687.4:c.3994G>T	p.Val1332Phe	p.V1332F	ENST00000375687	NM_015338.5	1332	Gtt/Ttt						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76937273	76937273	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000731-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			656	133	607	0	ENST00000373344.5:c.3475G>T	p.Glu1159Ter	p.E1159*	ENST00000373344	NM_000489.3	1159	Gag/Tag						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116339747	116339750	+	frameshift_variant	Frame_Shift_Del	DEL	TTCT	TTCT	-			P-0000731-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			719	115	342	0	ENST00000397752.3:c.610_613del	p.Ser204IlefsTer12	p.S204Ifs*12	ENST00000397752	NM_000245.2	203	tcTTCT/tc						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116411885	116411901	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTTTCTCTCTGTTTTAA	CTTTCTCTCTGTTTTAA	-			P-0000731-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			158	165	166	0	ENST00000397752.3:c.2888-18_2888-2del		p.X963_splice	ENST00000397752	NM_000245.2	963							NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135771923	135771923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	37	301	2	ENST00000298552.3:c.3194C>T	p.Thr1065Met	p.T1065M	ENST00000298552	NM_001162426.1	1065	aCg/aTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	236	270	0	ENST00000269305.4:c.537T>A	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caA						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0002338-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			392	80	409	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55976872	55976872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002338-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			534	67	599	0	ENST00000263923.4:c.1040G>C	p.Arg347Pro	p.R347P	ENST00000263923	NM_002253.2	347	cGt/cCt						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	149982897	149982897	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002338-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	90	527	0	ENST00000253339.5:c.3361G>C	p.Glu1121Gln	p.E1121Q	ENST00000253339		1121	Gag/Cag						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37650937	37650937	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002338-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	29	505	0	ENST00000447079.4:c.2409G>C	p.Lys803Asn	p.K803N	ENST00000447079	NM_015083.1	803	aaG/aaC						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48593532	48593532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002338-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	31	351	0	ENST00000342988.3:c.1283A>T	p.Lys428Met	p.K428M	ENST00000342988	NM_005359.5	428	aAg/aTg						NEWRECORD																																																																									
XIAP	331	MSKCC	GRCh37	X	123020190	123020190	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002338-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			482	75	639	0	ENST00000355640.3:c.678T>A	p.Asn226Lys	p.N226K	ENST00000355640		226	aaT/aaA						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123200219	123200219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002338-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			682	55	657	0	ENST00000218089.9:c.2198C>T	p.Ala733Val	p.A733V	ENST00000218089	NM_001042749.1	733	gCa/gTa						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139396835	139396835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001684-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	28	364	3	ENST00000277541.6:c.5273G>A	p.Arg1758His	p.R1758H	ENST00000277541	NM_017617.3	1758	cGc/cAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0002646-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	184	421	1	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11188584	11188584	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002646-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			801	100	496	0	ENST00000361445.4:c.5837T>C	p.Ile1946Thr	p.I1946T	ENST00000361445	NM_004958.3	1946	aTt/aCt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49440140	49440140	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002646-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			732	81	469	0	ENST00000301067.7:c.4486A>G	p.Thr1496Ala	p.T1496A	ENST00000301067	NM_003482.3	1496	Aca/Gca						NEWRECORD																																																																									
IGF1	3479	MSKCC	GRCh37	12	102874134	102874134	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002646-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			893	82	558	0	ENST00000307046.8:c.26C>A	p.Thr9Asn	p.T9N	ENST00000307046	NM_001111285.1	9	aCc/aAc						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32953486	32953486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002646-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			525	88	433	1	ENST00000380152.3:c.8787G>T	p.Leu2929Phe	p.L2929F	ENST00000380152		2929	ttG/ttT						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41514563	41514563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002646-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			665	83	440	0	ENST00000373198.4:c.98C>T	p.Ser33Phe	p.S33F	ENST00000373198	NM_133170.3	33	tCc/tTc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0003096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	89	241	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0003096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	87	225	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243809247	243809247	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	83	365	0	ENST00000263826.5:c.377A>T	p.Asp126Val	p.D126V	ENST00000263826	NM_005465.4	126	gAt/gTt						NEWRECORD																																																																									
E2F3	1871	MSKCC	GRCh37	6	20488473	20488473	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	172	287	0	ENST00000346618.3:c.1129T>G	p.Ser377Ala	p.S377A	ENST00000346618	NM_001949.4	377	Tcc/Gcc						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87570204	87570204	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	19	121	0	ENST00000277120.3:c.1944C>G	p.His648Gln	p.H648Q	ENST00000277120		648	caC/caG						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9520246	9520246	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	64	209	0	ENST00000353224.5:c.2023G>T	p.Gly675Ter	p.G675*	ENST00000353224	NM_177990.2	675	Gga/Tga						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63412891	63412891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	73	345	0	ENST00000330258.3:c.276G>T	p.Lys92Asn	p.K92N	ENST00000330258	NM_152424.3	92	aaG/aaT						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	33	192	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578520	7578520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	37	230	0	ENST00000269305.4:c.410T>A	p.Leu137Gln	p.L137Q	ENST00000269305	NM_001126112.2	137	cTg/cAg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	36	174	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
FANCC	2176	MSKCC	GRCh37	9	97912359	97912359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	69	271	0	ENST00000289081.3:c.532G>A	p.Glu178Lys	p.E178K	ENST00000289081	NM_000136.2	178	Gag/Aag						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68857481	68857481	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	85	336	0	ENST00000261769.5:c.2116C>T	p.Gln706Ter	p.Q706*	ENST00000261769	NM_004360.3	706	Caa/Taa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0001637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			109	40	1335	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134851747	134851747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			151	32	1132	0	ENST00000398015.3:c.1153G>A	p.Gly385Ser	p.G385S	ENST00000398015	NM_004441.4	385	Ggc/Agc						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29676271	29676271	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0001637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	54	892	0	ENST00000358273.4:c.7321+2T>A		p.X2441_splice	ENST00000358273	NM_001042492.2	2441							NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31023964	31023964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			214	22	1361	0	ENST00000375687.4:c.3449G>A	p.Gly1150Glu	p.G1150E	ENST00000375687	NM_015338.5	1150	gGa/gAa						NEWRECORD																																																																									
SRC	6714	MSKCC	GRCh37	20	36012563	36012563	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			109	10	866	0	ENST00000358208.4:c.7A>T	p.Ser3Cys	p.S3C	ENST00000358208		3	Agc/Tgc						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67591103	67591117	+	inframe_deletion	In_Frame_Del	DEL	ATTAAACCAGACCTT	ATTAAACCAGACCTT	-			P-0001637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	44	924	0	ENST00000274335.5:c.1698_1712del	p.Lys567_Ile571del	p.K567_I571del	ENST00000274335		566	ATTAAACCAGACCTT/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0002441-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			472	62	302	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002441-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			760	119	362	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134670486	134670486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002441-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			563	90	401	0	ENST00000398015.3:c.397C>T	p.Pro133Ser	p.P133S	ENST00000398015	NM_004441.4	133	Ccc/Tcc						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157454272	157454272	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002974-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	345	203	0	ENST00000346085.5:c.2482A>T	p.Ile828Phe	p.I828F	ENST00000346085	NM_020732.3	828	Atc/Ttc						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47162134	47162134	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003323-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	16	254	0	ENST00000409792.3:c.3992T>C	p.Leu1331Pro	p.L1331P	ENST00000409792	NM_014159.6	1331	cTa/cCa						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98231380	98231380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	27	246	0	ENST00000331920.6:c.1903G>A	p.Asp635Asn	p.D635N	ENST00000331920	NM_000264.3	635	Gac/Aac						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52678777	52678777	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	52	234	0	ENST00000394830.3:c.842A>G	p.Tyr281Cys	p.Y281C	ENST00000394830	NM_018313.4	281	tAt/tGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578494	7578494	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	85	200	0	ENST00000269305.4:c.436T>G	p.Trp146Gly	p.W146G	ENST00000269305	NM_001126112.2	146	Tgg/Ggg						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37649052	37649052	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	489	403	1	ENST00000447079.4:c.2157G>A	p.Trp719Ter	p.W719*	ENST00000447079	NM_015083.1	719	tgG/tgA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0000940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	138	521	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0000940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	178	212	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27105848	27105848	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	107	268	0	ENST00000324856.7:c.5459A>G	p.Asn1820Ser	p.N1820S	ENST00000324856	NM_006015.4	1820	aAt/aGt						NEWRECORD																																																																									
MPL	4352	MSKCC	GRCh37	1	43805693	43805693	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			508	31	329	0	ENST00000372470.3:c.749A>T	p.Asn250Ile	p.N250I	ENST00000372470	NM_005373.2	250	aAc/aTc						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120491082	120491082	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	109	240	0	ENST00000256646.2:c.2707T>G	p.Phe903Val	p.F903V	ENST00000256646	NM_024408.3	903	Ttc/Gtc						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29917793	29917793	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149145987		P-0000940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	108	418	0	ENST00000389048.3:c.875G>A	p.Arg292His	p.R292H	ENST00000389048	NM_004304.4	292	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0000940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			359	115	330	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175780	112175780	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	82	237	0	ENST00000257430.4:c.4490del	p.Pro1497GlnfsTer10	p.P1497Qfs*10	ENST00000257430	NM_000038.5	1497	Cca/ca						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0000940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			477	120	400	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0002855-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			396	80	246	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0002855-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	349	341	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0002855-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	93	219	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106520027	106520027	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370034420		P-0002855-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			720	50	383	0	ENST00000359195.3:c.2455G>A	p.Asp819Asn	p.D819N	ENST00000359195	NM_002649.2	819	Gat/Aat						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2191068	2191068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002855-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			943	58	383	0	ENST00000398665.3:c.322C>T	p.Arg108Cys	p.R108C	ENST00000398665	NM_032482.2	108	Cgc/Tgc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40944447	40944447	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	37	567	0	ENST00000373198.4:c.2055G>C	p.Lys685Asn	p.K685N	ENST00000373198	NM_133170.3	685	aaG/aaC						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16260330	16260330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			209	59	299	0	ENST00000375759.3:c.7595G>A	p.Ser2532Asn	p.S2532N	ENST00000375759	NM_015001.2	2532	aGc/aAc						NEWRECORD																																																																									
JUN	3725	MSKCC	GRCh37	1	59248635	59248635	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			296	68	526	0	ENST00000371222.2:c.108G>C	p.Gln36His	p.Q36H	ENST00000371222	NM_002228.3	36	caG/caC						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	30143065	30143065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			166	128	515	0	ENST00000389048.3:c.461G>T	p.Cys154Phe	p.C154F	ENST00000389048	NM_004304.4	154	tGc/tTc						NEWRECORD																																																																									
CASP8	841	MSKCC	GRCh37	2	202131498	202131498	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			222	62	289	0	ENST00000358485.4:c.466C>G	p.Gln156Glu	p.Q156E	ENST00000358485	NM_001080125.1	156	Caa/Gaa						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89259477	89259477	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			194	49	547	0	ENST00000336596.2:c.621G>C	p.Lys207Asn	p.K207N	ENST00000336596	NM_005233.5	207	aaG/aaC						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134670895	134670895	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	22	144	0	ENST00000398015.3:c.805+1G>A		p.X269_splice	ENST00000398015	NM_004441.4	269							NEWRECORD																																																																									
SOX2	6657	MSKCC	GRCh37	3	181430245	181430245	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			231	132	266	0	ENST00000325404.1:c.97A>C	p.Asn33His	p.N33H	ENST00000325404	NM_003106.3	33	Aac/Cac						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185146592	185146592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			241	227	393	0	ENST00000265026.3:c.223G>A	p.Asp75Asn	p.D75N	ENST00000265026	NM_004721.4	75	Gat/Aat						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55561788	55561788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	67	486	0	ENST00000288135.5:c.178G>A	p.Asp60Asn	p.D60N	ENST00000288135	NM_000222.2	60	Gat/Aat						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66356170	66356170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			172	87	460	0	ENST00000273854.3:c.1327G>T	p.Ala443Ser	p.A443S	ENST00000273854	NM_004439.5	443	Gca/Tca						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187541097	187541097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			64	95	353	0	ENST00000441802.2:c.6643T>C	p.Phe2215Leu	p.F2215L	ENST00000441802	NM_005245.3	2215	Ttc/Ctc						NEWRECORD																																																																									
SDHA	6389	MSKCC	GRCh37	5	233612	233612	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	68	270	0	ENST00000264932.6:c.916C>G	p.Leu306Val	p.L306V	ENST00000264932	NM_004168.2	306	Ctc/Gtc						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86665681	86665681	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	69	554	0	ENST00000274376.6:c.1662C>G	p.Ile554Met	p.I554M	ENST00000274376	NM_002890.2	554	atC/atG						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55220249	55220249	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			238	68	532	0	ENST00000275493.2:c.639C>G	p.Ile213Met	p.I213M	ENST00000275493	NM_005228.3	213	atC/atG						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81346620	81346620	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	102	469	0	ENST00000222390.5:c.1333G>C	p.Asp445His	p.D445H	ENST00000222390	NM_000601.4	445	Gat/Cat						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81372711	81372711	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			291	94	535	0	ENST00000222390.5:c.823G>C	p.Asp275His	p.D275H	ENST00000222390	NM_000601.4	275	Gac/Cac						NEWRECORD																																																																									
FGFR1	2260	MSKCC	GRCh37	8	38275875	38275875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			54	240	342	0	ENST00000425967.3:c.1394G>A	p.Ser465Asn	p.S465N	ENST00000425967	NM_001174067.1	465	aGt/aAt						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8341851	8341851	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866497340		P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			133	103	592	0	ENST00000356435.5:c.4789C>T	p.Gln1597Ter	p.Q1597*	ENST00000356435		1597	Caa/Taa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8518104	8518104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			159	39	501	0	ENST00000356435.5:c.1287G>T	p.Leu429Phe	p.L429F	ENST00000356435		429	ttG/ttT						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133747569	133747569	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			223	37	413	0	ENST00000318560.5:c.876G>C	p.Glu292Asp	p.E292D	ENST00000318560	NM_005157.4	292	gaG/gaC						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46233256	46233256	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			270	16	497	0	ENST00000334344.6:c.1475A>G	p.Gln492Arg	p.Q492R	ENST00000334344	NM_152641.2	492	cAg/cGg						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133212597	133212597	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			252	41	354	0	ENST00000320574.5:c.5692G>T	p.Glu1898Ter	p.E1898*	ENST00000320574	NM_006231.2	1898	Gag/Tag						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28959028	28959028	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			85	159	575	0	ENST00000282397.4:c.2110G>C	p.Glu704Gln	p.E704Q	ENST00000282397	NM_002019.4	704	Gag/Cag						NEWRECORD																																																																									
RAD51B	5890	MSKCC	GRCh37	14	68301861	68301861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			279	140	547	0	ENST00000487270.1:c.263C>T	p.Ser88Phe	p.S88F	ENST00000487270	NM_133509.3	88	tCt/tTt						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95562623	95562623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			198	170	511	0	ENST00000343455.3:c.4634C>T	p.Ser1545Phe	p.S1545F	ENST00000343455	NM_177438.2	1545	tCt/tTt						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3828091	3828091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			178	127	559	0	ENST00000262367.5:c.2034C>G	p.Ile678Met	p.I678M	ENST00000262367	NM_004380.2	678	atC/atG						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9916254	9916254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			141	83	469	0	ENST00000330684.3:c.2035C>T	p.Pro679Ser	p.P679S	ENST00000330684	NM_001134407.1	679	Cct/Tct						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16004961	16004961	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	46	616	0	ENST00000268712.3:c.2293C>G	p.Pro765Ala	p.P765A	ENST00000268712	NM_006311.3	765	Ccc/Gcc						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41243906	41243906	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			296	52	509	0	ENST00000357654.3:c.3642G>C	p.Glu1214Asp	p.E1214D	ENST00000357654	NM_007294.3	1214	gaG/gaC						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602369	10602369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			80	241	495	0	ENST00000171111.5:c.1209G>T	p.Trp403Cys	p.W403C	ENST00000171111	NM_203500.1	403	tgG/tgT						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42796475	42796475	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			84	217	396	0	ENST00000575354.2:c.3032G>C	p.Gly1011Ala	p.G1011A	ENST00000575354	NM_015125.3	1011	gGc/gCc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41076862	41076862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	27	508	1	ENST00000373198.4:c.1558G>A	p.Glu520Lys	p.E520K	ENST00000373198	NM_133170.3	520	Gag/Aag						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57485763	57485763	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			194	147	384	0	ENST00000371085.3:c.1064G>T	p.Gly355Val	p.G355V	ENST00000371085	NM_000516.4	355	gGg/gTg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003926-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	102	209	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48025924	48025924	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			523	213	442	0	ENST00000234420.5:c.802G>C	p.Asp268His	p.D268H	ENST00000234420	NM_000179.2	268	Gac/Cac						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47161957	47161957	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	580	428	0	ENST00000409792.3:c.4169C>G	p.Ser1390Ter	p.S1390*	ENST00000409792	NM_014159.6	1390	tCa/tGa						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47162683	47162683	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141227139		P-0002295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	629	451	2	ENST00000409792.3:c.3443C>T	p.Ser1148Phe	p.S1148F	ENST00000409792	NM_014159.6	1148	tCc/tTc						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47163476	47163476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			305	422	374	0	ENST00000409792.3:c.2650C>T	p.Gln884Ter	p.Q884*	ENST00000409792	NM_014159.6	884	Cag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	333	527	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120496232	120496232	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			374	248	594	0	ENST00000256646.2:c.2299C>T	p.Gln767Ter	p.Q767*	ENST00000256646	NM_024408.3	767	Cag/Tag						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108218052	108218052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			387	132	344	0	ENST00000278616.4:c.8631G>T	p.Leu2877Phe	p.L2877F	ENST00000278616	NM_000051.3	2877	ttG/ttT						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76938823	76938823	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			480	82	576	0	ENST00000373344.5:c.1925A>C	p.Asn642Thr	p.N642T	ENST00000373344	NM_000489.3	642	aAt/aCt						NEWRECORD																																																																									
CDC73	79577	MSKCC	GRCh37	1	193094296	193094297	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0002955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	341	467	0	ENST00000367435.3:c.187_188del	p.Leu63ThrfsTer2	p.L63Tfs*2	ENST00000367435	NM_024529.4	62	ttTCta/ttta						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128851531	128851531	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			212	251	533	0	ENST00000249373.3:c.1858del	p.Gln620SerfsTer156	p.Q620Sfs*156	ENST00000249373	NM_005631.4	619	gCc/gc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220599	1220612	+	frameshift_variant	Frame_Shift_Del	DEL	CGGACGACACCTGC	CGGACGACACCTGC	-			P-0002955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			167	214	450	0	ENST00000326873.7:c.622_635del	p.Asp208GlnfsTer53	p.D208Qfs*53	ENST00000326873	NM_000455.4	206	gCGGACGACACCTGC/g						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108143466	108143466	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			362	203	502	0	ENST00000278616.4:c.3171A>T	p.Lys1057Asn	p.K1057N	ENST00000278616	NM_000051.3	1057	aaA/aaT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0004402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	140	334	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0004402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	58	430	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	120	195	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156843578	156843578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	165	569	1	ENST00000524377.1:c.1004C>T	p.Pro335Leu	p.P335L	ENST00000524377	NM_002529.3	335	cCg/cTg						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67591251	67591251	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	87	244	2	ENST00000274335.5:c.1749G>A	p.Trp583Ter	p.W583*	ENST00000274335		583	tgG/tgA						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15961884	15961884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	150	379	0	ENST00000268712.3:c.5911G>A	p.Asp1971Asn	p.D1971N	ENST00000268712	NM_006311.3	1971	Gat/Aat						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	100	378	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	61	175	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0004511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	148	408	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5208010	5208010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	104	415	1	ENST00000357368.4:c.5701C>T	p.Arg1901Trp	p.R1901W	ENST00000357368	NM_002850.3	1901	Cgg/Tgg						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153244138	153244138	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	145	398	0	ENST00000281708.4:c.2019G>A	p.Trp673Ter	p.W673*	ENST00000281708	NM_033632.3	673	tgG/tgA						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153244290	153244290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	88	254	0	ENST00000281708.4:c.1867C>T	p.His623Tyr	p.H623Y	ENST00000281708	NM_033632.3	623	Cat/Tat						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67473635	67473635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	141	352	0	ENST00000327367.4:c.715G>A	p.Glu239Lys	p.E239K	ENST00000327367	NM_005902.3	239	Gag/Aag						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67473647	67473647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	32	346	0	ENST00000327367.4:c.727C>T	p.Arg243Cys	p.R243C	ENST00000327367	NM_005902.3	243	Cgc/Tgc						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45374935	45374935	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	192	360	1	ENST00000262160.6:c.908C>G	p.Thr303Arg	p.T303R	ENST00000262160	NM_005901.5	303	aCa/aGa						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63411936	63411936	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	144	572	0	ENST00000330258.3:c.1231G>T	p.Glu411Ter	p.E411*	ENST00000330258	NM_152424.3	411	Gaa/Taa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112170816	112170816	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	113	385	0	ENST00000257430.4:c.1912del	p.Ile638TyrfsTer8	p.I638Yfs*8	ENST00000257430	NM_000038.5	638	Ata/ta						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67358693	67358693	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	31	259	1	ENST00000327367.4:c.204del	p.Arg69GlyfsTer47	p.R69Gfs*47	ENST00000327367	NM_005902.3	67	atC/at						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0003784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	208	270	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120480579	120480579	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	156	388	0	ENST00000256646.2:c.3238C>T	p.Gln1080Ter	p.Q1080*	ENST00000256646	NM_024408.3	1080	Cag/Tag						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50450265	50450265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	116	376	0	ENST00000331340.3:c.449G>A	p.Cys150Tyr	p.C150Y	ENST00000331340	NM_006060.4	150	tGc/tAc						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98248153	98248153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	124	245	0	ENST00000331920.6:c.398G>A	p.Gly133Glu	p.G133E	ENST00000331920	NM_000264.3	133	gGa/gAa						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67645412	67645412	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	139	277	0	ENST00000264010.4:c.677A>G	p.Tyr226Cys	p.Y226C	ENST00000264010	NM_006565.3	226	tAc/tGc						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12016550	12016550	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0003784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	155	354	0	ENST00000353533.5:c.686A>T	p.Asp229Val	p.D229V	ENST00000353533	NM_003010.3	229	gAt/gTt						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70119113	70119113	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0003784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	76	152	0	ENST00000245479.2:c.685G>A	p.Gly229Arg	p.G229R	ENST00000245479	NM_000346.3	229	Ggg/Agg						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9546556	9546556	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	135	339	0	ENST00000353224.5:c.1466A>G	p.Glu489Gly	p.E489G	ENST00000353224	NM_177990.2	489	gAa/gGa						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115112120	115112123	+	frameshift_variant	Frame_Shift_Del	DEL	ACCC	ACCC	-			P-0003784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	206	408	0	ENST00000257566.3:c.1617_1620del	p.Met539IlefsTer92	p.M539Ifs*92	ENST00000257566	NM_016569.3	539	atGGGT/at						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	11984848	11984848	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0000152-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			166	79	143	0	ENST00000353533.5:c.393+1G>A		p.X131_splice	ENST00000353533	NM_003010.3	131							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0003720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	171	166	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	133	287	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793663		P-0003720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	284	697	0	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	64	208	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66231728	66231728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	75	313	0	ENST00000273854.3:c.1972G>A	p.Asp658Asn	p.D658N	ENST00000273854	NM_004439.5	658	Gat/Aat						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153245399	153245399	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	206	329	0	ENST00000281708.4:c.1792A>C	p.Asn598His	p.N598H	ENST00000281708	NM_033632.3	598	Aat/Cat						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86686657	86686657	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	91	391	0	ENST00000274376.6:c.3101A>C	p.Gln1034Pro	p.Q1034P	ENST00000274376	NM_002890.2	1034	cAa/cCa						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2962834	2962834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	53	119	0	ENST00000396946.4:c.2074G>A	p.Val692Met	p.V692M	ENST00000396946	NM_032415.4	692	Gtg/Atg						NEWRECORD																																																																									
CDKN2B	1030	MSKCC	GRCh37	9	22008835	22008835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	108	262	1	ENST00000276925.6:c.118C>T	p.Pro40Ser	p.P40S	ENST00000276925	NM_004936.3	40	Ccc/Tcc						NEWRECORD																																																																									
TMPRSS2	7113	MSKCC	GRCh37	21	42852434	42852434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	102	221	0	ENST00000398585.3:c.652G>A	p.Gly218Arg	p.G218R	ENST00000398585	NM_001135099.1	218	Ggg/Agg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	138	208	0	ENST00000257430.4:c.3964del	p.Glu1322LysfsTer93	p.E1322Kfs*93	ENST00000257430	NM_000038.5	1322	Gaa/aa						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70120210	70120228	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCCACTACAGCGAGCAG	CAGCCACTACAGCGAGCAG	-			P-0003720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	108	201	1	ENST00000245479.2:c.1216_1234del	p.His406SerfsTer58	p.H406Sfs*58	ENST00000245479	NM_000346.3	404	ccCAGCCACTACAGCGAGCAG/cc						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	208	350	3	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	152	309	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
HIST1H3G	8355	MSKCC	GRCh37	6	26271321	26271321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	298	955	0	ENST00000305910.3:c.292G>A	p.Glu98Lys	p.E98K	ENST00000305910	NM_003534.2	98	Gag/Aag						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156849852	156849852	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	108	427	0	ENST00000524377.1:c.2108A>C	p.Lys703Thr	p.K703T	ENST00000524377	NM_002529.3	703	aAg/aCg						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99169377	99169377	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	175	330	0	ENST00000074304.5:c.1307C>G	p.Ala436Gly	p.A436G	ENST00000074304	NM_001134224.1	436	gCc/gGc						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47165333	47165333	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	183	435	0	ENST00000409792.3:c.793G>T	p.Glu265Ter	p.E265*	ENST00000409792	NM_014159.6	265	Gaa/Taa						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89448483	89448483	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	155	393	0	ENST00000336596.2:c.1447A>C	p.Ser483Arg	p.S483R	ENST00000336596	NM_005233.5	483	Agt/Cgt						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189349368	189349368	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	387	357	0	ENST00000264731.3:c.62+2T>G		p.X21_splice	ENST00000264731	NM_003722.4	21							NEWRECORD																																																																									
PMS2	5395	MSKCC	GRCh37	7	6042175	6042175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	190	398	0	ENST00000265849.7:c.446A>G	p.Tyr149Cys	p.Y149C	ENST00000265849	NM_000535.5	149	tAc/tGc						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135779804	135779804	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	96	363	0	ENST00000298552.3:c.2035T>G	p.Phe679Val	p.F679V	ENST00000298552	NM_001162426.1	679	Ttt/Gtt						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70405480	70405480	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	251	498	0	ENST00000373644.4:c.2994A>C	p.Lys998Asn	p.K998N	ENST00000373644	NM_030625.2	998	aaA/aaC						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70446194	70446194	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	94	444	0	ENST00000373644.4:c.5134A>T	p.Lys1712Ter	p.K1712*	ENST00000373644	NM_030625.2	1712	Aag/Tag						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41246701	41246701	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	220	468	0	ENST00000357654.3:c.847T>G	p.Leu283Val	p.L283V	ENST00000357654	NM_007294.3	283	Tta/Gta						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	21	324	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	151	363	0	ENST00000269305.4:c.817C>G	p.Arg273Gly	p.R273G	ENST00000269305	NM_001126112.2	273	Cgt/Ggt						NEWRECORD																																																																									
NEGR1	257194	MSKCC	GRCh37	1	72076755	72076755	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	60	433	0	ENST00000357731.5:c.742G>T	p.Ala248Ser	p.A248S	ENST00000357731	NM_173808.2	248	Gca/Tca						NEWRECORD																																																																									
MYCN	4613	MSKCC	GRCh37	2	16086130	16086130	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	97	239	0	ENST00000281043.3:c.1306G>T	p.Glu436Ter	p.E436*	ENST00000281043	NM_005378.4	436	Gag/Tag						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99154325	99154325	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	38	207	0	ENST00000074304.5:c.468-1G>A		p.X156_splice	ENST00000074304	NM_001134224.1	156							NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212568839	212568839	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	36	344	0	ENST00000342788.4:c.1279G>C	p.Val427Leu	p.V427L	ENST00000342788	NM_005235.2	427	Gta/Cta						NEWRECORD																																																																									
CUL3	8452	MSKCC	GRCh37	2	225370713	225370713	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	42	300	0	ENST00000264414.4:c.1166C>A	p.Ser389Ter	p.S389*	ENST00000264414	NM_003590.4	389	tCa/tAa						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47161891	47161891	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	136	418	0	ENST00000409792.3:c.4235A>T	p.Glu1412Val	p.E1412V	ENST00000409792	NM_014159.6	1412	gAg/gTg						NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35861055	35861055	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	94	254	0	ENST00000303115.3:c.184C>A	p.Pro62Thr	p.P62T	ENST00000303115	NM_002185.3	62	Cca/Aca						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56111450	56111450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	26	106	0	ENST00000399503.3:c.50C>T	p.Ala17Val	p.A17V	ENST00000399503	NM_005921.1	17	gCc/gTc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112154810	112154810	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	112	305	0	ENST00000257430.4:c.1081C>A	p.His361Asn	p.H361N	ENST00000257430	NM_000038.5	361	Cat/Aat						NEWRECORD																																																																									
ETV1	2115	MSKCC	GRCh37	7	13971286	13971286	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	146	279	0	ENST00000405192.2:c.643A>G	p.Met215Val	p.M215V	ENST00000405192	NM_001163147.1	215	Atg/Gtg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55221802	55221802	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	309	398	0	ENST00000275493.2:c.846G>T	p.Glu282Asp	p.E282D	ENST00000275493	NM_005228.3	282	gaG/gaT						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8499831	8499831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	40	243	0	ENST00000356435.5:c.2138G>T	p.Gly713Val	p.G713V	ENST00000356435		713	gGt/gTt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21970966	21970966	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	64	212	0	ENST00000304494.5:c.392G>C	p.Arg131Pro	p.R131P	ENST00000304494	NM_000077.4	131	cGc/cCc						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971195	21971195	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	17	78	0	ENST00000304494.5:c.163G>T	p.Gly55Cys	p.G55C	ENST00000304494	NM_000077.4	55	Ggc/Tgc						NEWRECORD																																																																									
PAK1	5058	MSKCC	GRCh37	11	77043870	77043870	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	111	425	0	ENST00000356341.3:c.1456A>G	p.Asn486Asp	p.N486D	ENST00000356341	NM_002576.4	486	Aac/Gac						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100999042	100999042	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	114	289	0	ENST00000325455.5:c.760G>T	p.Ala254Ser	p.A254S	ENST00000325455	NM_001202474.3	254	Gcg/Tcg						NEWRECORD																																																																									
YAP1	10413	MSKCC	GRCh37	11	102076656	102076656	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	56	187	0	ENST00000282441.5:c.835G>C	p.Val279Leu	p.V279L	ENST00000282441	NM_001130145.2	279	Gtg/Ctg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49431772	49431772	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	104	213	0	ENST00000301067.7:c.9367G>T	p.Glu3123Ter	p.E3123*	ENST00000301067	NM_003482.3	3123	Gag/Tag						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56486597	56486597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	99	317	0	ENST00000267101.3:c.1176G>T	p.Glu392Asp	p.E392D	ENST00000267101	NM_001982.3	392	gaG/gaT						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57861789	57861789	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1227	153	470	0	ENST00000228682.2:c.1090T>C	p.Cys364Arg	p.C364R	ENST00000228682	NM_005269.2	364	Tgt/Cgt						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57864714	57864714	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	154	442	0	ENST00000228682.2:c.2191G>T	p.Gly731Ter	p.G731*	ENST00000228682	NM_005269.2	731	Gga/Tga						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48947611	48947611	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	28	225	0	ENST00000267163.4:c.1198C>G	p.Leu400Val	p.L400V	ENST00000267163	NM_000321.2	400	Ctg/Gtg						NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103514842	103514842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	49	198	0	ENST00000355739.4:c.1343C>T	p.Ser448Leu	p.S448L	ENST00000355739	NM_000123.3	448	tCa/tTa						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68867335	68867335	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	185	310	0	ENST00000261769.5:c.2582A>G	p.Tyr861Cys	p.Y861C	ENST00000261769	NM_004360.3	861	tAc/tGc						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89815072	89815072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	238	336	1	ENST00000389301.3:c.3343G>A	p.Glu1115Lys	p.E1115K	ENST00000389301	NM_000135.2	1115	Gag/Aag						NEWRECORD																																																																									
H3F3B	3021	MSKCC	GRCh37	17	73774795	73774795	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1180	76	301	0	ENST00000254810.4:c.292G>T	p.Glu98Ter	p.E98*	ENST00000254810	NM_005324.3	98	Gaa/Taa						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39623751	39623751	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	45	375	0	ENST00000262039.4:c.2158G>T	p.Glu720Ter	p.E720*	ENST00000262039	NM_002647.2	720	Gag/Tag						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39932044	39932044	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	61	174	0	ENST00000378444.4:c.2555T>C	p.Phe852Ser	p.F852S	ENST00000378444	NM_001123385.1	852	tTc/tCc						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39934026	39934026	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	62	212	0	ENST00000378444.4:c.573G>C	p.Trp191Cys	p.W191C	ENST00000378444	NM_001123385.1	191	tgG/tgC						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53230856	53230856	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	116	199	0	ENST00000375401.3:c.1937A>T	p.Glu646Val	p.E646V	ENST00000375401	NM_004187.3	646	gAg/gTg						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63410401	63410401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	130	189	0	ENST00000330258.3:c.2766G>T	p.Gln922His	p.Q922H	ENST00000330258	NM_152424.3	922	caG/caT						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123184047	123184047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	43	162	0	ENST00000218089.9:c.905C>T	p.Ala302Val	p.A302V	ENST00000218089	NM_001042749.1	302	gCt/gTt						NEWRECORD																																																																									
CDKN1B	1027	MSKCC	GRCh37	12	12870798	12870798	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	51	86	0	ENST00000228872.4:c.27del	p.Ser10AlafsTer32	p.S10Afs*32	ENST00000228872	NM_004064.3	9	Ggg/gg						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88476295	88476295	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	79	329	0	ENST00000360948.2:c.1837delC	p.Leu613SerfsTer8	p.L613Sfs*8	ENST00000360948	NM_001012338.2	613	Ctc/tc						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0001889-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			798	632	403	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578507	7578507	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001889-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			100	303	319	1	ENST00000269305.4:c.423C>G	p.Cys141Trp	p.C141W	ENST00000269305	NM_001126112.2	141	tgC/tgG						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115871	8115872	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0001889-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			751	488	359	0	ENST00000346208.3:c.1219_1220delTC	p.Ser407AlafsTer99	p.S407Afs*99	ENST00000346208		406	aTC/a						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0003502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	133	238	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782329		P-0003502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	61	162	0	ENST00000269305.4:c.746G>C	p.Arg249Thr	p.R249T	ENST00000269305	NM_001126112.2	249	aGg/aCg						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25972563	25972563	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0003502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	36	201	0	ENST00000435504.4:c.1860+2T>C		p.X620_splice	ENST00000435504		620							NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185161270	185161270	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	29	299	0	ENST00000265026.3:c.697A>G	p.Met233Val	p.M233V	ENST00000265026	NM_004721.4	233	Atg/Gtg						NEWRECORD																																																																									
AXL	558	MSKCC	GRCh37	19	41762416	41762416	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	40	309	0	ENST00000301178.4:c.2096A>G	p.Asn699Ser	p.N699S	ENST00000301178	NM_021913.4	699	aAt/aGt						NEWRECORD																																																																									
CUL3	8452	MSKCC	GRCh37	2	225422497	225422497	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	670	385	0	ENST00000264414.4:c.143A>G	p.Asn48Ser	p.N48S	ENST00000264414	NM_003590.4	48	aAt/aGt						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30713826	30713826	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	240	254	0	ENST00000359013.4:c.1226A>C	p.Asn409Thr	p.N409T	ENST00000359013	NM_001024847.2	409	aAt/aCt						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187628022	187628022	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	336	413	0	ENST00000441802.2:c.2960A>T	p.Gln987Leu	p.Q987L	ENST00000441802	NM_005245.3	987	cAg/cTg						NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35876230	35876230	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	493	308	1	ENST00000303115.3:c.1022G>T	p.Gly341Val	p.G341V	ENST00000303115	NM_002185.3	341	gGa/gTa						NEWRECORD																																																																									
PNRC1	10957	MSKCC	GRCh37	6	89793902	89793902	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	129	178	0	ENST00000336032.3:c.971A>G	p.Lys324Arg	p.K324R	ENST00000336032	NM_006813.2	324	aAa/aGa						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	237	293	1	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139396454	139396454	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	337	347	0	ENST00000277541.6:c.5471G>T	p.Arg1824Leu	p.R1824L	ENST00000277541	NM_017617.3	1824	cGg/cTg						NEWRECORD																																																																									
BMPR1A	657	MSKCC	GRCh37	10	88672140	88672140	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	256	308	0	ENST00000372037.3:c.674T>G	p.Leu225Trp	p.L225W	ENST00000372037	NM_004329.2	225	tTg/tGg						NEWRECORD																																																																									
SUFU	51684	MSKCC	GRCh37	10	104309744	104309744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	336	417	0	ENST00000369902.3:c.335G>A	p.Gly112Glu	p.G112E	ENST00000369902	NM_016169.3	112	gGa/gAa						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100999053	100999053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	292	470	0	ENST00000325455.5:c.749G>T	p.Gly250Val	p.G250V	ENST00000325455	NM_001202474.3	250	gGa/gTa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	252	300	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37650809	37650809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	337	394	0	ENST00000447079.4:c.2281G>A	p.Asp761Asn	p.D761N	ENST00000447079	NM_015083.1	761	Gac/Aac						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45372109	45372109	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	380	387	0	ENST00000262160.6:c.1060G>C	p.Ala354Pro	p.A354P	ENST00000262160	NM_005901.5	354	Gca/Cca						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023569	27023570	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	309	333	0	ENST00000324856.7:c.675_676delinsT	p.Ala226ProfsTer6	p.A226Pfs*6	ENST00000324856	NM_006015.4	225	ccCGcc/ccTcc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	467	535	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67358586	67358587	+	missense_variant	Missense_Mutation	DNP	GA	GA	CG			P-0004133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	99	467	0	ENST00000327367.4:c.94_95delinsCG	p.Glu32Arg	p.E32R	ENST00000327367	NM_005902.3	32	GAg/CGg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0004466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	44	106	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
FGFR3	2261	MSKCC	GRCh37	4	1803171	1803171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	44	283	0	ENST00000260795.2:c.523C>T	p.Arg175Cys	p.R175C	ENST00000260795		175	Cgc/Tgc						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49425601	49425601	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	22	279	0	ENST00000301067.7:c.12887T>A	p.Leu4296Ter	p.L4296*	ENST00000301067	NM_003482.3	4296	tTa/tAa						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38060989	38060990	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0004466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	18	120	0	ENST00000250448.2:c.999_1000del	p.Gln333HisfsTer81	p.Q333Hfs*81	ENST00000250448	NM_004496.3	333	caGAct/cact						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0002442-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	170	303	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16042434	16042434	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002442-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	197	462	1	ENST00000268712.3:c.1240C>T	p.Arg414Ter	p.R414*	ENST00000268712	NM_006311.3	414	Cga/Tga						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153245393	153245393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002442-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	189	408	0	ENST00000281708.4:c.1798G>A	p.Asp600Asn	p.D600N	ENST00000281708	NM_033632.3	600	Gat/Aat						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43615035	43615035	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142318626		P-0002442-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			428	105	458	0	ENST00000355710.3:c.2449C>T	p.Arg817Cys	p.R817C	ENST00000355710	NM_020975.4	817	Cgc/Tgc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175186	112175187	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	T			P-0002442-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			157	197	222	0	ENST00000257430.4:c.3895_3896delinsT	p.Ala1299LeufsTer6	p.A1299Lfs*6	ENST00000257430	NM_000038.5	1299	GCt/Tt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002775-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			134	73	189	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16257434	16257434	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002775-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			413	23	401	0	ENST00000375759.3:c.4699G>A	p.Glu1567Lys	p.E1567K	ENST00000375759	NM_015001.2	1567	Gag/Aag						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178096481	178096481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002775-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	37	313	0	ENST00000397062.3:c.850G>A	p.Glu284Lys	p.E284K	ENST00000397062	NM_006164.4	284	Gaa/Aaa						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117609825	117609825	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002775-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	117	479	0	ENST00000368508.3:c.6874C>G	p.Leu2292Val	p.L2292V	ENST00000368508	NM_002944.2	2292	Cta/Gta						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118373293	118373293	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002775-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			460	66	479	0	ENST00000534358.1:c.6686C>G	p.Ser2229Ter	p.S2229*	ENST00000534358	NM_005933.3	2229	tCa/tGa						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73346365	73346365	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002775-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	23	368	0	ENST00000377767.4:c.1435G>C	p.Asp479His	p.D479H	ENST00000377767	NM_014953.3	479	Gac/Cac						NEWRECORD																																																																									
MAX	4149	MSKCC	GRCh37	14	65569036	65569036	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs752477890		P-0002775-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			390	32	427	0	ENST00000358664.4:c.22G>T	p.Glu8Ter	p.E8*	ENST00000358664	NM_002382.4	8	Gag/Tag						NEWRECORD																																																																									
NF2	4771	MSKCC	GRCh37	22	30038202	30038202	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002775-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	104	480	0	ENST00000338641.4:c.375G>C	p.Gln125His	p.Q125H	ENST00000338641	NM_000268.3	125	caG/caC						NEWRECORD																																																																									
NF2	4771	MSKCC	GRCh37	22	30050664	30050664	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002775-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	31	460	0	ENST00000338641.4:c.466A>C	p.Ser156Arg	p.S156R	ENST00000338641	NM_000268.3	156	Agt/Cgt						NEWRECORD																																																																									
IRF4	3662	MSKCC	GRCh37	6	397223	397223	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001811-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			783	73	432	0	ENST00000380956.4:c.608A>G	p.His203Arg	p.H203R	ENST00000380956	NM_001195286.1	203	cAc/cGc						NEWRECORD																																																																									
FGF19	9965	MSKCC	GRCh37	11	69514145	69514145	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001811-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			875	60	620	0	ENST00000294312.3:c.536T>A	p.Leu179His	p.L179H	ENST00000294312	NM_005117.2	179	cTc/cAc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	114	335	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	63	205	0	ENST00000269305.4:c.700T>A	p.Tyr234Asn	p.Y234N	ENST00000269305	NM_001126112.2	234	Tac/Aac						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30672497	30672497	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	44	329	0	ENST00000376406.3:c.4463C>G	p.Thr1488Arg	p.T1488R	ENST00000376406	NM_014641.2	1488	aCa/aGa						NEWRECORD																																																																									
KLF4	9314	MSKCC	GRCh37	9	110251306	110251306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	22	235	0	ENST00000374672.4:c.31G>T	p.Ala11Ser	p.A11S	ENST00000374672	NM_004235.4	11	Gct/Tct						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108122617	108122617	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	37	381	0	ENST00000278616.4:c.1661C>A	p.Thr554Lys	p.T554K	ENST00000278616	NM_000051.3	554	aCg/aAg						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47045904	47045904	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	105	472	0	ENST00000329236.7:c.2465G>T	p.Gly822Val	p.G822V	ENST00000329236	NM_001204466.1	822	gGt/gTt						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48916843	48916843	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	87	205	0	ENST00000267163.4:c.373del	p.Glu125LysfsTer11	p.E125Kfs*11	ENST00000267163	NM_000321.2	125	Gaa/aa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27057969	27057969	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	86	256	0	ENST00000324856.7:c.1678del	p.Tyr560ThrfsTer59	p.Y560Tfs*59	ENST00000324856	NM_006015.4	559	ccT/cc						NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48027634	48027636	+	inframe_deletion	In_Frame_Del	DEL	CCA	CCA	-			P-0004460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	17	171	0	ENST00000234420.5:c.2512_2514del	p.Pro838del	p.P838del	ENST00000234420	NM_000179.2	838	CCA/-						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000471-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			379	108	254	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25457168	25457168	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	85	309	0	ENST00000264709.3:c.2719G>T	p.Glu907Ter	p.E907*	ENST00000264709	NM_175629.2	907	Gag/Tag						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2984019	2984019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	89	406	0	ENST00000396946.4:c.511G>T	p.Val171Leu	p.V171L	ENST00000396946	NM_032415.4	171	Gtg/Ttg						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81355224	81355224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	79	313	0	ENST00000222390.5:c.1150G>A	p.Asp384Asn	p.D384N	ENST00000222390	NM_000601.4	384	Gat/Aat						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101904946	101904947	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0003247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	98	319	1	ENST00000374994.4:c.934_935delinsTT	p.Gly312Phe	p.G312F	ENST00000374994	NM_004612.2	312	GGt/TTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	166	372	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	36	255	0	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc						NEWRECORD																																																																									
FLCN	201163	MSKCC	GRCh37	17	17131408	17131408	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	47	247	0	ENST00000285071.4:c.44G>T	p.Gly15Val	p.G15V	ENST00000285071	NM_144997.5	15	gGc/gTc						NEWRECORD																																																																									
XIAP	331	MSKCC	GRCh37	X	123019534	123019534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	72	395	0	ENST00000355640.3:c.22G>A	p.Gly8Arg	p.G8R	ENST00000355640		8	Gga/Aga						NEWRECORD																																																																									
CCND2	894	MSKCC	GRCh37	12	4388076	4388076	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	74	277	0	ENST00000261254.3:c.562T>A	p.Cys188Ser	p.C188S	ENST00000261254	NM_001759.3	188	Tgt/Agt						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5273506	5273506	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	78	728	0	ENST00000357368.4:c.326C>G	p.Ala109Gly	p.A109G	ENST00000357368	NM_002850.3	109	gCc/gGc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	39	446	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002954-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	107	526	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
PIK3CD	5293	MSKCC	GRCh37	1	9775978	9775978	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002954-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	46	403	0	ENST00000377346.4:c.442G>T	p.Glu148Ter	p.E148*	ENST00000377346	NM_005026.3	148	Gag/Tag						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66361105	66361105	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0002954-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	74	457	0	ENST00000273854.3:c.1066+1G>T		p.X356_splice	ENST00000273854	NM_004439.5	356							NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8521421	8521421	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002954-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			311	108	516	0	ENST00000356435.5:c.817G>T	p.Ala273Ser	p.A273S	ENST00000356435		273	Gca/Tca						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87325645	87325645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002954-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			455	59	552	1	ENST00000277120.3:c.522G>T	p.Leu174Phe	p.L174F	ENST00000277120		174	ttG/ttT						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8106054	8106054	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002954-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	47	352	0	ENST00000346208.3:c.874A>G	p.Lys292Glu	p.K292E	ENST00000346208		292	Aaa/Gaa						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108236229	108236229	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002954-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	98	360	0	ENST00000278616.4:c.9165G>A	p.Trp3055Ter	p.W3055*	ENST00000278616	NM_000051.3	3055	tgG/tgA						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46245972	46245972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002954-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			386	93	415	0	ENST00000334344.6:c.4066C>A	p.Pro1356Thr	p.P1356T	ENST00000334344	NM_152641.2	1356	Ccg/Acg						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37868298	37868298	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0002954-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			397	65	309	0	ENST00000269571.5:c.1019G>C	p.Arg340Pro	p.R340P	ENST00000269571		340	cGa/cCa						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39537606	39537606	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002954-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	31	431	0	ENST00000262039.4:c.140C>A	p.Ser47Ter	p.S47*	ENST00000262039	NM_002647.2	47	tCa/tAa						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610509	10610509	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002954-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	117	483	0	ENST00000171111.5:c.201G>T	p.Met67Ile	p.M67I	ENST00000171111	NM_203500.1	67	atG/atT						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001548-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			678	573	499	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753660142		P-0001548-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			333	370	551	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			778	143	551	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			643	116	568	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0001702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			790	177	583	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116486	112116486	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0001702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			626	115	441	0	ENST00000257430.4:c.532-1G>T		p.X178_splice	ENST00000257430	NM_000038.5	178							NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70119795	70119804	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCTATCGA	CCCCTATCGA	-			P-0001702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			736	118	714	0	ENST00000245479.2:c.798_807del	p.Pro267SerfsTer9	p.P267Sfs*9	ENST00000245479	NM_000346.3	266	cCCCCTATCGAc/cc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001262-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	52	237	0	ENST00000269305.4:c.392A>G	p.Asn131Ser	p.N131S	ENST00000269305	NM_001126112.2	131	aAc/aGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0000757-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	488	510	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
RAD54L	8438	MSKCC	GRCh37	1	46743950	46743950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000757-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			361	188	222	0	ENST00000371975.4:c.2240G>A	p.Arg747His	p.R747H	ENST00000371975	NM_003579.3	747	cGc/cAc						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56492802	56492802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000757-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			774	276	279	0	ENST00000407977.2:c.137C>T	p.Ala46Val	p.A46V	ENST00000407977		46	gCt/gTt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220644	1220644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000757-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	170	478	0	ENST00000326873.7:c.662C>T	p.Pro221Leu	p.P221L	ENST00000326873	NM_000455.4	221	cCg/cTg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0000757-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1066	559	367	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578181	7578181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			637	142	379	0	ENST00000269305.4:c.668C>T	p.Pro223Leu	p.P223L	ENST00000269305	NM_001126112.2	223	cCt/cTt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173968	112173968	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			330	54	158	0	ENST00000257430.4:c.2677G>T	p.Glu893Ter	p.E893*	ENST00000257430	NM_000038.5	893	Gaa/Taa						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			845	118	396	0	ENST00000347630.2:c.397T>C	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	Ttc/Ctc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40980849	40980849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	60	267	0	ENST00000373198.4:c.1637G>A	p.Arg546Gln	p.R546Q	ENST00000373198	NM_133170.3	546	cGg/cAg						NEWRECORD																																																																									
HIST1H2BD	3017	MSKCC	GRCh37	6	26158551	26158551	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001204-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			720	57	214	0	ENST00000289316.2:c.154G>C	p.Asp52His	p.D52H	ENST00000289316	NM_138720.2	52	Gac/Cac						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001204-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1609	95	654	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	964	215	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0004399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	416	209	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35876476	35876476	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	217	234	0	ENST00000303115.3:c.1268C>G	p.Ser423Cys	p.S423C	ENST00000303115	NM_002185.3	423	tCt/tGt						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18435139	18435139	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1039	184	263	0	ENST00000266497.5:c.124C>G	p.Gln42Glu	p.Q42E	ENST00000266497		42	Cag/Gag						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134670847	134670847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002375-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			183	209	244	0	ENST00000398015.3:c.758G>T	p.Cys253Phe	p.C253F	ENST00000398015	NM_004441.4	253	tGc/tTc						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32456348	32456348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002375-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			517	114	587	0	ENST00000332351.3:c.544C>T	p.Pro182Ser	p.P182S	ENST00000332351	NM_024426.4	182	Cct/Tct						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32456366	32456366	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002375-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			499	109	551	0	ENST00000332351.3:c.526C>G	p.Arg176Gly	p.R176G	ENST00000332351	NM_024426.4	176	Cgc/Ggc						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110435035	110435035	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002375-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			975	97	204	0	ENST00000375856.3:c.3366G>C	p.Gln1122His	p.Q1122H	ENST00000375856	NM_003749.2	1122	caG/caC						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	347972	347972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002375-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	144	669	0	ENST00000262320.3:c.1534G>T	p.Gly512Trp	p.G512W	ENST00000262320	NM_003502.3	512	Ggg/Tgg						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32456679	32456680	+	missense_variant	Missense_Mutation	DNP	GG	GG	TA			P-0002375-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	45	148	0	ENST00000332351.3:c.212_213delinsTA	p.Ser71Leu	p.S71L	ENST00000332351	NM_024426.4	71	tCC/tTA						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32456322	32456323	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0002375-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			530	106	625	0	ENST00000332351.3:c.569_570delinsTT	p.Ser190Phe	p.S190F	ENST00000332351	NM_024426.4	190	tCC/tTT						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001732-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	101	617	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0001732-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			83	10	247	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913283		P-0001732-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			91	96	570	0	ENST00000263967.3:c.3129G>T	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atT						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175175	112175175	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001732-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			109	42	319	0	ENST00000257430.4:c.3885del	p.Ala1296GlnfsTer9	p.A1296Qfs*9	ENST00000257430	NM_000038.5	1295	gAa/ga						NEWRECORD																																																																									
PIK3CD	5293	MSKCC	GRCh37	1	9776116	9776116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001732-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			250	96	392	0	ENST00000377346.4:c.580G>A	p.Val194Ile	p.V194I	ENST00000377346	NM_005026.3	194	Gtt/Att						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70120002	70120002	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001732-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			51	169	99	0	ENST00000245479.2:c.1004G>A	p.Trp335Ter	p.W335*	ENST00000245479	NM_000346.3	335	tGg/tAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0003286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	228	293	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	75	188	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64571837	64571837	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	350	610	0	ENST00000337652.1:c.1817C>A	p.Ser606Tyr	p.S606Y	ENST00000337652	NM_130803.2	606	tCt/tAt						NEWRECORD																																																																									
PAK1	5058	MSKCC	GRCh37	11	77047178	77047178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3584	277	457	0	ENST00000356341.3:c.1366G>A	p.Glu456Lys	p.E456K	ENST00000356341	NM_002576.4	456	Gaa/Aaa						NEWRECORD																																																																									
NF2	4771	MSKCC	GRCh37	22	30070871	30070871	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	222	367	0	ENST00000338641.4:c.1387G>T	p.Glu463Ter	p.E463*	ENST00000338641	NM_000268.3	463	Gag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0004556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	60	408	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt						NEWRECORD																																																																									
RPTOR	57521	MSKCC	GRCh37	17	78867614	78867614	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	95	506	0	ENST00000306801.3:c.2350A>G	p.Ile784Val	p.I784V	ENST00000306801	NM_020761.2	784	Atc/Gtc						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32190311	32190311	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	37	193	0	ENST00000375023.3:c.428del	p.Cys143SerfsTer109	p.C143Sfs*109	ENST00000375023	NM_004557.3	143	tGc/tc						NEWRECORD																																																																									
VHL	7428	MSKCC	GRCh37	3	10183724	10183724	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	43	357	0	ENST00000256474.2:c.193T>A	p.Ser65Thr	p.S65T	ENST00000256474	NM_000551.3	65	Tcg/Acg						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118307256	118307256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			34	13	37	1	ENST00000534358.1:c.29C>T	p.Pro10Leu	p.P10L	ENST00000534358	NM_005933.3	10	cCc/cTc						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28908189	28908189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	111	427	0	ENST00000282397.4:c.2566C>T	p.Arg856Trp	p.R856W	ENST00000282397	NM_002019.4	856	Cgg/Tgg						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64575560	64575560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	82	288	0	ENST00000337652.1:c.472del	p.Asp158ThrfsTer32	p.D158Tfs*32	ENST00000337652	NM_130803.2	158	Gac/ac						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692863	89692868	+	inframe_deletion	In_Frame_Del	DEL	ACAATC	ACAATC	-			P-0004141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	64	94	0	ENST00000371953.3:c.348_353del	p.Asn117_His118del	p.N117_H118del	ENST00000371953	NM_000314.4	116	gACAATCat/gat						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519893		P-0002025-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			232	240	648	0	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0002025-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	288	536	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0002025-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			254	161	573	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175621	112175621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002025-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			312	117	625	0	ENST00000257430.4:c.4330C>T	p.Gln1444Ter	p.Q1444*	ENST00000257430	NM_000038.5	1444	Caa/Taa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174043	112174043	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002025-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	40	425	0	ENST00000257430.4:c.2752del	p.Glu918ArgfsTer37	p.E918Rfs*37	ENST00000257430	NM_000038.5	918	Gag/ag						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106616	27106616	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000519-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	227	284	0	ENST00000324856.7:c.6227A>T	p.Tyr2076Phe	p.Y2076F	ENST00000324856	NM_006015.4	2076	tAc/tTc						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66270143	66270143	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000519-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			689	164	200	0	ENST00000273854.3:c.1739C>G	p.Thr580Arg	p.T580R	ENST00000273854	NM_004439.5	580	aCa/aGa						NEWRECORD																																																																									
MYOD1	4654	MSKCC	GRCh37	11	17741600	17741600	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000519-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	67	124	0	ENST00000250003.3:c.271G>T	p.Gly91Cys	p.G91C	ENST00000250003	NM_002478.4	91	Ggc/Tgc						NEWRECORD																																																																									
MYOD1	4654	MSKCC	GRCh37	11	17741569	17741597	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGCGCGCGCCCAGCGGGCACCACCAGG	TGTGCGCGCGCCCAGCGGGCACCACCAGG	-			P-0000519-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	61	153	0	ENST00000250003.3:c.240_268delTGTGCGCGCGCCCAGCGGGCACCACCAGG	p.Val81GlyfsTer37	p.V81Gfs*37	ENST00000250003	NM_002478.4	80	caTGTGCGCGCGCCCAGCGGGCACCACCAGGcg/cacg						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8500933	8500933	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002314-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1076	100	395	0	ENST00000356435.5:c.1949C>A	p.Thr650Asn	p.T650N	ENST00000356435		650	aCt/aAt						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18435287	18435287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002314-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1100	95	405	0	ENST00000266497.5:c.272C>T	p.Ser91Phe	p.S91F	ENST00000266497		91	tCt/tTt						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115956	8115956	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000522-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			404	167	162	0	ENST00000346208.3:c.1305delC	p.Ser436ProfsTer39	p.S436Pfs*39	ENST00000346208		434	caC/ca						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108190686	108190686	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000522-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			231	307	224	0	ENST00000278616.4:c.6354delA	p.Val2119Ter	p.V2119*	ENST00000278616	NM_000051.3	2118	gAa/ga						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0003879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	315	215	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116411709	116411709	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0003879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	84	268	0	ENST00000397752.3:c.2887+1G>A		p.X963_splice	ENST00000397752	NM_000245.2	963							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579310	7579310	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0003879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	231	230	0	ENST00000269305.4:c.375+2T>C		p.X125_splice	ENST00000269305	NM_001126112.2	125							NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17955109	17955109	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140784576		P-0003879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	98	312	0	ENST00000458235.1:c.118C>T	p.Arg40Cys	p.R40C	ENST00000458235	NM_000215.3	40	Cgc/Tgc						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53231106	53231106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	158	465	1	ENST00000375401.3:c.1796G>A	p.Arg599His	p.R599H	ENST00000375401	NM_004187.3	599	cGt/cAt						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106155312	106155316	+	frameshift_variant	Frame_Shift_Del	DEL	TAGTC	TAGTC	-			P-0003879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	323	339	0	ENST00000380013.4:c.213_217del	p.Asn71LysfsTer5	p.N71Kfs*5	ENST00000380013	NM_001127208.2	71	aaTAGTCgt/aagt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	272	408	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139409128	139409128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	94	279	0	ENST00000277541.6:c.2041G>A	p.Glu681Lys	p.E681K	ENST00000277541	NM_017617.3	681	Gag/Aag						NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14029336	14029336	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	82	395	0	ENST00000311895.7:c.1547G>T	p.Arg516Leu	p.R516L	ENST00000311895	NM_005236.2	516	cGa/cTa						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47038877	47038877	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	16	129	0	ENST00000329236.7:c.653C>G	p.Ser218Ter	p.S218*	ENST00000329236	NM_001204466.1	218	tCa/tGa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0000552-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			159	269	161	4	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0000552-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			607	336	367	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142231170	142231170	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000552-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			630	291	340	0	ENST00000350721.4:c.4784A>T	p.Lys1595Ile	p.K1595I	ENST00000350721	NM_001184.3	1595	aAa/aTa						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50459522	50459522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000552-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	115	183	0	ENST00000331340.3:c.811G>A	p.Val271Ile	p.V271I	ENST00000331340	NM_006060.4	271	Gtc/Atc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0000552-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			135	196	172	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575103	48575103	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000552-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			562	35	295	0	ENST00000342988.3:c.297G>T	p.Trp99Cys	p.W99C	ENST00000342988	NM_005359.5	99	tgG/tgT						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	30	485	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0003303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	42	649	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg						NEWRECORD																																																																									
HIST3H3	8290	MSKCC	GRCh37	1	228612975	228612975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	36	470	0	ENST00000366696.1:c.52C>A	p.Arg18Ser	p.R18S	ENST00000366696	NM_003493.2	18	Cgc/Agc						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25972870	25972870	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	32	474	0	ENST00000435504.4:c.1555G>C	p.Glu519Gln	p.E519Q	ENST00000435504		519	Gaa/Caa						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180036987	180036987	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	43	516	0	ENST00000261937.6:c.3725G>C	p.Arg1242Thr	p.R1242T	ENST00000261937	NM_182925.4	1242	aGa/aCa						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453179	140453179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	27	280	0	ENST00000288602.6:c.1756G>A	p.Glu586Lys	p.E586K	ENST00000288602	NM_004333.4	586	Gaa/Aaa						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115112395	115112395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	17	190	0	ENST00000257566.3:c.1345C>A	p.Leu449Met	p.L449M	ENST00000257566	NM_016569.3	449	Ctg/Atg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89725055	89725055	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	64	145	0	ENST00000371953.3:c.1038C>G	p.Tyr346Ter	p.Y346*	ENST00000371953	NM_000314.4	346	taC/taG						NEWRECORD																																																																									
MAPK3	5595	MSKCC	GRCh37	16	30134479	30134479	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	36	137	0	ENST00000263025.4:c.52G>C	p.Glu18Gln	p.E18Q	ENST00000263025	NM_002746.2	18	Gag/Cag						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56178638	56178707	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAGTTCCTCAGCTGCAGGTTGAAAATGGAGAAGATATCATCATTATTCAACAGGATGTAAGTATAGATTC	TAGTTCCTCAGCTGCAGGTTGAAAATGGAGAAGATATCATCATTATTCAACAGGATGTAAGTATAGATTC	-			P-0003141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	26	98	0	ENST00000399503.3:c.3612_3666+15del		p.X1204_splice	ENST00000399503	NM_005921.1	1204							NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0001894-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			607	280	351	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
VHL	7428	MSKCC	GRCh37	3	10183656	10183656	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001894-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			966	236	372	0	ENST00000256474.2:c.125A>T	p.Glu42Val	p.E42V	ENST00000256474	NM_000551.3	42	gAg/gTg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000259-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	40	87	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86667940	86667940	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000259-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			616	110	267	0	ENST00000274376.6:c.1704G>A	p.Trp568Ter	p.W568*	ENST00000274376	NM_002890.2	568	tgG/tgA						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38060789	38060800	+	inframe_deletion	In_Frame_Del	DEL	GAACGGGTGGTT	GAACGGGTGGTT	-			P-0000259-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1168	221	766	0	ENST00000250448.2:c.1189_1200delAACCACCCGTTC	p.Asn397_Phe400del	p.N397_F400del	ENST00000250448	NM_004496.3	397	AACCACCCGTTC/-						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0001864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			519	235	620	2	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175118	112175118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	177	407	0	ENST00000257430.4:c.3827C>A	p.Ser1276Ter	p.S1276*	ENST00000257430	NM_000038.5	1276	tCa/tAa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151945387	151945387	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	41	259	0	ENST00000262189.6:c.2132C>G	p.Pro711Arg	p.P711R	ENST00000262189	NM_170606.2	711	cCt/cGt						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118339530	118339530	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			688	126	631	0	ENST00000534358.1:c.473G>C	p.Arg158Thr	p.R158T	ENST00000534358	NM_005933.3	158	aGa/aCa						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56480341	56480341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			620	642	575	0	ENST00000267101.3:c.448G>A	p.Glu150Lys	p.E150K	ENST00000267101	NM_001982.3	150	Gag/Aag						NEWRECORD																																																																									
CDK8	1024	MSKCC	GRCh37	13	26978097	26978097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			500	1619	651	2	ENST00000381527.3:c.1274C>G	p.Ser425Cys	p.S425C	ENST00000381527	NM_001260.1	425	tCc/tGc						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23647556	23647556	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			880	316	605	0	ENST00000261584.4:c.311C>G	p.Pro104Arg	p.P104R	ENST00000261584	NM_024675.3	104	cCt/cGt						NEWRECORD																																																																									
ALOX12B	242	MSKCC	GRCh37	17	7976555	7976555	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	626	553	0	ENST00000319144.4:c.1837G>T	p.Glu613Ter	p.E613*	ENST00000319144	NM_001139.2	613	Gag/Tag						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47044997	47044997	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	138	261	0	ENST00000329236.7:c.2089A>G	p.Ile697Val	p.I697V	ENST00000329236	NM_001204466.1	697	Atc/Gtc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577497	7577509	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ACCTGGAGTCTTC	ACCTGGAGTCTTC	-			P-0001864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			131	269	408	0	ENST00000269305.4:c.772_782+2del		p.X258_splice	ENST00000269305	NM_001126112.2	258							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398280	25398281	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0001864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			556	582	580	0	ENST00000256078.4:c.38_39delinsTT	p.Gly13Val	p.G13V	ENST00000256078	NM_033360.2	13	gGC/gTT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	46	383	0	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63852534	63852534	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	20	206	1	ENST00000279873.7:c.3312G>C	p.Gln1104His	p.Q1104H	ENST00000279873	NM_032199.2	1104	caG/caC						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2124249	2124249	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	16	310	0	ENST00000219476.3:c.2404A>C	p.Ser802Arg	p.S802R	ENST00000219476	NM_000548.3	802	Agc/Cgc						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857811	9857811	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	14	295	0	ENST00000330684.3:c.3590G>T	p.Gly1197Val	p.G1197V	ENST00000330684	NM_001134407.1	1197	gGt/gTt						NEWRECORD																																																																									
ALOX12B	242	MSKCC	GRCh37	17	7983153	7983153	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			57	29	365	0	ENST00000319144.4:c.861C>G	p.Phe287Leu	p.F287L	ENST00000319144	NM_001139.2	287	ttC/ttG						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36206884	36206884	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	14	109	0	ENST00000300305.3:c.628C>G	p.Leu210Val	p.L210V	ENST00000300305		210	Cta/Gta						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44941887	44941887	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0004483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	36	362	0	ENST00000377967.4:c.3209+2T>G		p.X1070_splice	ENST00000377967	NM_021140.2	1070							NEWRECORD																																																																									
GSK3B	2932	MSKCC	GRCh37	3	119720939	119720966	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGAATCACAAAGTTTGGCTTGATATA	CCTGAATCACAAAGTTTGGCTTGATATA	-			P-0004483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	53	317	0	ENST00000316626.5:c.209_236del	p.Val70GlufsTer23	p.V70Efs*23	ENST00000316626		70	gTATATCAAGCCAAACTTTGTGATTCAGGa/ga						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162737133	162737144	+	inframe_deletion	In_Frame_Del	DEL	AGAAAATGCTGG	AGAAAATGCTGG	-			P-0004483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	17	202	0	ENST00000367921.3:c.1281_1292del	p.Met428_Lys431del	p.M428_K431del	ENST00000367921	NM_006182.2	426	cAGAAAATGCTGGag/cag						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39934342	39934343	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0004483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	23	321	0	ENST00000378444.4:c.256_257delinsTT	p.Gly86Leu	p.G86L	ENST00000378444	NM_001123385.1	86	GGa/TTa						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106157093	106157093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002187-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			728	359	484	0	ENST00000380013.4:c.1994C>A	p.Thr665Lys	p.T665K	ENST00000380013	NM_001127208.2	665	aCa/aAa						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106520000	106520000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002187-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			840	165	390	0	ENST00000359195.3:c.2428C>A	p.Pro810Thr	p.P810T	ENST00000359195	NM_002649.2	810	Cca/Aca						NEWRECORD																																																																									
GNAQ	2776	MSKCC	GRCh37	9	80646059	80646059	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002187-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	50	161	0	ENST00000286548.4:c.93G>C	p.Arg31Ser	p.R31S	ENST00000286548	NM_002072.3	31	agG/agC						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135782153	135782153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002187-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			731	195	506	0	ENST00000298552.3:c.1403C>T	p.Ser468Phe	p.S468F	ENST00000298552	NM_001162426.1	468	tCt/tTt						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139396341	139396341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002187-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			510	133	372	0	ENST00000277541.6:c.5497G>A	p.Asp1833Asn	p.D1833N	ENST00000277541	NM_017617.3	1833	Gac/Aac						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108155200	108155200	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0002187-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	243	355	0	ENST00000278616.4:c.3993G>T	p.Gln1331His	p.Q1331H	ENST00000278616	NM_000051.3	1331	caG/caT						NEWRECORD																																																																									
PTPN11	5781	MSKCC	GRCh37	12	112924327	112924327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002187-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			671	240	423	0	ENST00000351677.2:c.1273G>T	p.Asp425Tyr	p.D425Y	ENST00000351677	NM_002834.3	425	Gac/Tac						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133249269	133249269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002187-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			571	302	393	1	ENST00000320574.5:c.1630G>T	p.Val544Leu	p.V544L	ENST00000320574	NM_006231.2	544	Gtg/Ttg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108160415	108160415	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002187-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	326	438	1	ENST00000278616.4:c.4323del	p.Tyr1442IlefsTer9	p.Y1442Ifs*9	ENST00000278616	NM_000051.3	1441	atA/at						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	256	488	0	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt						NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36932083	36932083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	239	546	0	ENST00000361632.4:c.2386C>T	p.Pro796Ser	p.P796S	ENST00000361632		796	Ccc/Tcc						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16024488	16024488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	232	393	2	ENST00000268712.3:c.1730G>A	p.Ser577Asn	p.S577N	ENST00000268712	NM_006311.3	577	aGt/aAt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0004066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	72	305	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55241677	55241677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	113	321	0	ENST00000275493.2:c.2125G>A	p.Glu709Lys	p.E709K	ENST00000275493	NM_005228.3	709	Gaa/Aaa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	62	162	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	135	248	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99182557	99182557	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	129	277	0	ENST00000074304.5:c.2360A>G	p.Gln787Arg	p.Q787R	ENST00000074304	NM_001134224.1	787	cAg/cGg						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53223439	53223439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	198	416	1	ENST00000375401.3:c.3920G>A	p.Arg1307Gln	p.R1307Q	ENST00000375401	NM_004187.3	1307	cGg/cAg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002412-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			486	298	423	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913324		P-0002412-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			233	142	233	0	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag						NEWRECORD																																																																									
IRS1	3667	MSKCC	GRCh37	2	227662082	227662082	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002412-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			410	104	320	0	ENST00000305123.5:c.1373G>C	p.Gly458Ala	p.G458A	ENST00000305123	NM_005544.2	458	gGt/gCt						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55955556	55955556	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002412-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			484	228	497	0	ENST00000263923.4:c.3389A>T	p.Tyr1130Phe	p.Y1130F	ENST00000263923	NM_002253.2	1130	tAt/tTt						NEWRECORD																																																																									
H3F3C	440093	MSKCC	GRCh37	12	31945066	31945066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002412-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			260	128	222	0	ENST00000340398.3:c.35C>A	p.Thr12Asn	p.T12N	ENST00000340398	NM_001013699.2	12	aCc/aAc						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602823	10602823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002412-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	195	295	0	ENST00000171111.5:c.755G>T	p.Trp252Leu	p.W252L	ENST00000171111	NM_203500.1	252	tGg/tTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	468	603	0	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142253946	142253946	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	238	309	0	ENST00000350721.4:c.3921G>C	p.Leu1307Phe	p.L1307F	ENST00000350721	NM_001184.3	1307	ttG/ttC						NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056270	26056270	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	258	384	0	ENST00000343677.2:c.387G>C	p.Lys129Asn	p.K129N	ENST00000343677	NM_005319.3	129	aaG/aaC						NEWRECORD																																																																									
HIST1H2BD	3017	MSKCC	GRCh37	6	26158660	26158660	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			27	40	22	0	ENST00000289316.2:c.263C>G	p.Ser88Trp	p.S88W	ENST00000289316	NM_138720.2	88	tCg/tGg						NEWRECORD																																																																									
HIST1H3I	8354	MSKCC	GRCh37	6	27839943	27839943	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	396	1054	2	ENST00000328488.2:c.151G>T	p.Glu51Ter	p.E51*	ENST00000328488	NM_003533.2	51	Gag/Tag						NEWRECORD																																																																									
SUFU	51684	MSKCC	GRCh37	10	104309759	104309759	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	237	558	0	ENST00000369902.3:c.350G>T	p.Gly117Val	p.G117V	ENST00000369902	NM_016169.3	117	gGc/gTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001242-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	114	241	0	ENST00000269305.4:c.736del	p.Met246Ter	p.M246*	ENST00000269305	NM_001126112.2	246	Atg/tg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0002783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1320	1006	407	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0002783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	1640	318	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0002783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			245	301	437	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0002783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	133	392	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63851006	63851006	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	71	310	0	ENST00000279873.7:c.1784T>A	p.Phe595Tyr	p.F595Y	ENST00000279873	NM_032199.2	595	tTc/tAc						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99452113	99452113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	70	337	0	ENST00000268035.6:c.1447G>A	p.Gly483Arg	p.G483R	ENST00000268035	NM_000875.3	483	Ggg/Agg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	134	326	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	78	138	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173975	112173975	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	105	192	0	ENST00000257430.4:c.2684C>A	p.Ser895Ter	p.S895*	ENST00000257430	NM_000038.5	895	tCa/tAa						NEWRECORD																																																																									
IRF4	3662	MSKCC	GRCh37	6	393168	393168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	117	198	0	ENST00000380956.4:c.16G>A	p.Gly6Ser	p.G6S	ENST00000380956	NM_001195286.1	6	Ggc/Agc						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45371710	45371710	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0003474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	128	313	0	ENST00000262160.6:c.1280+1G>T		p.X427_splice	ENST00000262160	NM_005901.5	427							NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70354597	70354597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	160	399	0	ENST00000374080.3:c.4762G>A	p.Val1588Met	p.V1588M	ENST00000374080		1588	Gtg/Atg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175636	112175636	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	209	375	0	ENST00000257430.4:c.4346del	p.Lys1449SerfsTer24	p.K1449Sfs*24	ENST00000257430	NM_000038.5	1449	Aag/ag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	41	320	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47098478	47098478	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	25	349	0	ENST00000409792.3:c.6796C>T	p.Gln2266Ter	p.Q2266*	ENST00000409792	NM_014159.6	2266	Cag/Tag						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32166449	32166449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	48	522	0	ENST00000375023.3:c.4594G>A	p.Glu1532Lys	p.E1532K	ENST00000375023	NM_004557.3	1532	Gag/Aag						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64572588	64572588	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	38	233	0	ENST00000337652.1:c.1283G>A	p.Trp428Ter	p.W428*	ENST00000337652	NM_130803.2	428	tGg/tAg						NEWRECORD																																																																									
CBL	867	MSKCC	GRCh37	11	119144609	119144609	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	42	416	0	ENST00000264033.4:c.622G>T	p.Ala208Ser	p.A208S	ENST00000264033	NM_005188.3	208	Gct/Tct						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49440097	49440097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	40	399	0	ENST00000301067.7:c.4529G>A	p.Cys1510Tyr	p.C1510Y	ENST00000301067	NM_003482.3	1510	tGt/tAt						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2136342	2136342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	28	393	0	ENST00000219476.3:c.4811G>A	p.Gly1604Asp	p.G1604D	ENST00000219476	NM_000548.3	1604	gGc/gAc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48573666	48573666	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0004223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	18	160	0	ENST00000342988.3:c.249+1G>A		p.X83_splice	ENST00000342988	NM_005359.5	83							NEWRECORD																																																																									
DAXX	1616	MSKCC	GRCh37	6	33288192	33288193	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0004223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	34	266	0	ENST00000374542.5:c.1215_1216del	p.Ala406ArgfsTer11	p.A406Rfs*11	ENST00000374542	NM_001141970.1	405	tcTGca/tcca						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0001097-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			765	230	348	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	12	372	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47164419	47164419	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	12	337	0	ENST00000409792.3:c.1707del	p.Phe569LeufsTer10	p.F569Lfs*10	ENST00000409792	NM_014159.6	569	ttT/tt						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42041557	42041565	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGAAACC	TCTGAAACC	G			P-0004594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	14	637	0	ENST00000219905.7:c.5752_5760delinsG	p.Ser1918GlufsTer5	p.S1918Efs*5	ENST00000219905	NM_001164273.1	1918	TCTGAAACC/G						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0001305-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			333	119	610	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226556019	226556019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001305-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			182	97	242	0	ENST00000366794.5:c.2158G>T	p.Val720Leu	p.V720L	ENST00000366794	NM_001618.3	720	Gtg/Ttg						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134920381	134920381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001305-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			299	85	531	0	ENST00000398015.3:c.2196G>A	p.Met732Ile	p.M732I	ENST00000398015	NM_004441.4	732	atG/atA						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36259174	36259174	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001305-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			601	153	539	0	ENST00000300305.3:c.317G>T	p.Trp106Leu	p.W106L	ENST00000300305		106	tGg/tTg						NEWRECORD																																																																									
ARAF	369	MSKCC	GRCh37	X	47428427	47428427	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001305-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	29	792	0	ENST00000377045.4:c.1295C>G	p.Ser432Cys	p.S432C	ENST00000377045	NM_001654.4	432	tCt/tGt						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70339327	70339327	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0001305-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			444	30	386	0	ENST00000374080.3:c.204G>T	p.Lys68Asn	p.K68N	ENST00000374080		68	aaG/aaT						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002789-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	30	197	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002789-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	95	375	2	ENST00000269305.4:c.880delG	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	294	Gag/ag						NEWRECORD																																																																									
CDC73	79577	MSKCC	GRCh37	1	193104712	193104712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			880	145	262	0	ENST00000367435.3:c.416G>A	p.Arg139Gln	p.R139Q	ENST00000367435	NM_024529.4	139	cGa/cAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			737	191	341	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1043	155	320	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139407979	139407979	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200816814		P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			674	79	242	0	ENST00000277541.6:c.2218G>A	p.Asp740Asn	p.D740N	ENST00000277541	NM_017617.3	740	Gac/Aac						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226579931	226579931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1332	131	419	0	ENST00000366794.5:c.371C>T	p.Thr124Met	p.T124M	ENST00000366794	NM_001618.3	124	aCg/aTg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			805	294	232	1	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			960	144	251	0	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			846	147	297	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95572534	95572534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1016	65	259	0	ENST00000343455.3:c.2831G>A	p.Arg944Gln	p.R944Q	ENST00000343455	NM_177438.2	944	cGa/cAa						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11193216	11193216	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			818	58	321	0	ENST00000361445.4:c.5285A>G	p.Gln1762Arg	p.Q1762R	ENST00000361445	NM_004958.3	1762	cAg/cGg						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16202864	16202864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			966	107	319	0	ENST00000375759.3:c.572C>A	p.Pro191Gln	p.P191Q	ENST00000375759	NM_015001.2	191	cCa/cAa						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16237633	16237633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			955	86	300	0	ENST00000375759.3:c.1080G>T	p.Lys360Asn	p.K360N	ENST00000375759	NM_015001.2	360	aaG/aaT						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27100172	27100172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			783	78	242	0	ENST00000324856.7:c.3968G>A	p.Arg1323His	p.R1323H	ENST00000324856	NM_006015.4	1323	cGc/cAc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27107078	27107078	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			666	82	216	0	ENST00000324856.7:c.6689T>C	p.Met2230Thr	p.M2230T	ENST00000324856	NM_006015.4	2230	aTg/aCg						NEWRECORD																																																																									
MPL	4352	MSKCC	GRCh37	1	43803818	43803818	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147938568		P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			870	104	355	0	ENST00000372470.3:c.128G>A	p.Arg43Gln	p.R43Q	ENST00000372470	NM_005373.2	43	cGa/cAa						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120480621	120480621	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			787	91	262	0	ENST00000256646.2:c.3196C>A	p.Leu1066Ile	p.L1066I	ENST00000256646	NM_024408.3	1066	Ctc/Atc						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156845433	156845433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			784	54	261	0	ENST00000524377.1:c.1476G>T	p.Glu492Asp	p.E492D	ENST00000524377	NM_002529.3	492	gaG/gaT						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162722975	162722975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1038	56	326	0	ENST00000367921.3:c.173C>A	p.Ala58Asp	p.A58D	ENST00000367921	NM_006182.2	58	gCc/gAc						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243778404	243778404	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1101	73	332	0	ENST00000263826.5:c.621T>G	p.Phe207Leu	p.F207L	ENST00000263826	NM_005465.4	207	ttT/ttG						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243800978	243800978	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1383	203	449	0	ENST00000263826.5:c.496C>T	p.Arg166Ter	p.R166*	ENST00000263826	NM_005465.4	166	Cga/Tga						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25498386	25498386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1003	80	345	0	ENST00000264709.3:c.475G>A	p.Glu159Lys	p.E159K	ENST00000264709	NM_175629.2	159	Gaa/Aaa						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25965468	25965468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1311	243	413	0	ENST00000435504.4:c.3738G>T	p.Glu1246Asp	p.E1246D	ENST00000435504		1246	gaG/gaT						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29606679	29606679	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs865931787		P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			868	151	363	1	ENST00000389048.3:c.1201C>T	p.Arg401Ter	p.R401*	ENST00000389048	NM_004304.4	401	Cga/Tga						NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48027541	48027541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			661	96	235	0	ENST00000234420.5:c.2419G>A	p.Glu807Lys	p.E807K	ENST00000234420	NM_000179.2	807	Gaa/Aaa						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198262749	198262749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1199	99	337	0	ENST00000335508.6:c.3226G>A	p.Ala1076Thr	p.A1076T	ENST00000335508	NM_012433.2	1076	Gcc/Acc						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198265468	198265468	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1185	207	378	0	ENST00000335508.6:c.2689C>A	p.Leu897Ile	p.L897I	ENST00000335508	NM_012433.2	897	Ctt/Att						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212248749	212248749	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			922	152	307	0	ENST00000342788.4:c.3518C>A	p.Ser1173Tyr	p.S1173Y	ENST00000342788	NM_005235.2	1173	tCt/tAt						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215645489	215645489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1352	211	409	0	ENST00000260947.4:c.1109G>A	p.Arg370His	p.R370H	ENST00000260947	NM_000465.2	370	cGt/cAt						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215645633	215645633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1021	153	345	0	ENST00000260947.4:c.965G>A	p.Arg322His	p.R322H	ENST00000260947	NM_000465.2	322	cGt/cAt						NEWRECORD																																																																									
CUL3	8452	MSKCC	GRCh37	2	225365104	225365104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1209	133	296	0	ENST00000264414.4:c.1586G>T	p.Arg529Ile	p.R529I	ENST00000264414	NM_003590.4	529	aGa/aTa						NEWRECORD																																																																									
IRS1	3667	MSKCC	GRCh37	2	227662224	227662224	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1094	204	347	0	ENST00000305123.5:c.1231C>T	p.Arg411Ter	p.R411*	ENST00000305123	NM_005544.2	411	Cga/Tga						NEWRECORD																																																																									
RAF1	5894	MSKCC	GRCh37	3	12641904	12641904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			775	138	210	0	ENST00000251849.4:c.845G>A	p.Arg282Gln	p.R282Q	ENST00000251849	NM_002880.3	282	cGa/cAa						NEWRECORD																																																																									
RAF1	5894	MSKCC	GRCh37	3	12641905	12641905	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			833	68	210	0	ENST00000251849.4:c.844C>T	p.Arg282Ter	p.R282*	ENST00000251849	NM_002880.3	282	Cga/Tga						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30648462	30648462	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1018	69	230	0	ENST00000359013.4:c.87G>T	p.Gln29His	p.Q29H	ENST00000359013	NM_001024847.2	29	caG/caT						NEWRECORD																																																																									
MYD88	4615	MSKCC	GRCh37	3	38182748	38182748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1116	92	298	0	ENST00000396334.3:c.901C>T	p.Arg301Cys	p.R301C	ENST00000396334	NM_002468.4	301	Cgc/Tgc						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41275648	41275648	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1121	88	307	0	ENST00000349496.5:c.1543C>T	p.Arg515Ter	p.R515*	ENST00000349496	NM_001904.3	515	Cga/Tga						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47147533	47147533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			889	165	328	0	ENST00000409792.3:c.4793G>A	p.Arg1598Gln	p.R1598Q	ENST00000409792	NM_014159.6	1598	cGa/cAa						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47164577	47164577	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			957	191	343	0	ENST00000409792.3:c.1549G>T	p.Glu517Ter	p.E517*	ENST00000409792	NM_014159.6	517	Gaa/Taa						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47165088	47165088	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			990	208	328	0	ENST00000409792.3:c.1038A>C	p.Glu346Asp	p.E346D	ENST00000409792	NM_014159.6	346	gaA/gaC						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134911429	134911429	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			676	148	236	0	ENST00000398015.3:c.1894G>T	p.Glu632Ter	p.E632*	ENST00000398015	NM_004441.4	632	Gaa/Taa						NEWRECORD																																																																									
PIK3CB	5291	MSKCC	GRCh37	3	138413662	138413662	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			896	245	257	1	ENST00000289153.2:c.1858C>T	p.Arg620Ter	p.R620*	ENST00000289153	NM_006219.2	620	Cga/Tga						NEWRECORD																																																																									
PIK3CB	5291	MSKCC	GRCh37	3	138461582	138461582	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1094	154	337	0	ENST00000289153.2:c.439G>T	p.Glu147Ter	p.E147*	ENST00000289153	NM_006219.2	147	Gaa/Taa						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142231276	142231276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1141	283	325	0	ENST00000350721.4:c.4678G>A	p.Asp1560Asn	p.D1560N	ENST00000350721	NM_001184.3	1560	Gat/Aat						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142281802	142281802	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1270	174	351	1	ENST00000350721.4:c.442G>T	p.Glu148Ter	p.E148*	ENST00000350721	NM_001184.3	148	Gaa/Taa						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185198200	185198200	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			846	291	293	0	ENST00000265026.3:c.2682G>T	p.Glu894Asp	p.E894D	ENST00000265026	NM_004721.4	894	gaG/gaT						NEWRECORD																																																																									
BCL6	604	MSKCC	GRCh37	3	187446160	187446160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1047	159	300	0	ENST00000232014.4:c.1528G>A	p.Asp510Asn	p.D510N	ENST00000232014	NM_001130845.1	510	Gat/Aat						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189455648	189455648	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			854	211	241	0	ENST00000264731.3:c.182T>G	p.Phe61Cys	p.F61C	ENST00000264731	NM_003722.4	61	tTt/tGt						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55127309	55127309	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			896	77	316	0	ENST00000257290.5:c.97A>C	p.Asn33His	p.N33H	ENST00000257290	NM_006206.4	33	Aat/Cat						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55155215	55155215	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			775	77	293	0	ENST00000257290.5:c.2814G>T	p.Glu938Asp	p.E938D	ENST00000257290	NM_006206.4	938	gaG/gaT						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55561827	55561827	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			974	74	324	0	ENST00000288135.5:c.217G>T	p.Glu73Ter	p.E73*	ENST00000288135	NM_000222.2	73	Gaa/Taa						NEWRECORD																																																																									
FAM175A	84142	MSKCC	GRCh37	4	84383948	84383948	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			936	105	320	0	ENST00000321945.7:c.904A>C	p.Lys302Gln	p.K302Q	ENST00000321945	NM_139076.2	302	Aaa/Caa						NEWRECORD																																																																									
FAM175A	84142	MSKCC	GRCh37	4	84393392	84393392	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1029	80	329	0	ENST00000321945.7:c.265T>G	p.Leu89Val	p.L89V	ENST00000321945	NM_139076.2	89	Tta/Gta						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187541808	187541808	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1098	148	392	0	ENST00000441802.2:c.5932A>C	p.Lys1978Gln	p.K1978Q	ENST00000441802	NM_005245.3	1978	Aag/Cag						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187542785	187542785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			971	130	383	0	ENST00000441802.2:c.4955C>T	p.Ser1652Phe	p.S1652F	ENST00000441802	NM_005245.3	1652	tCt/tTt						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187554966	187554966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			880	124	289	0	ENST00000441802.2:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000441802	NM_005245.3	1399	Gac/Aac						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187629964	187629964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			774	116	291	0	ENST00000441802.2:c.1018G>T	p.Asp340Tyr	p.D340Y	ENST00000441802	NM_005245.3	340	Gat/Tat						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187630723	187630723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1147	142	447	0	ENST00000441802.2:c.259G>A	p.Glu87Lys	p.E87K	ENST00000441802	NM_005245.3	87	Gag/Aag						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56177065	56177065	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			779	136	259	0	ENST00000399503.3:c.2335A>G	p.Thr779Ala	p.T779A	ENST00000399503	NM_005921.1	779	Act/Gct						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56177448	56177448	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1513	121	425	0	ENST00000399503.3:c.2421T>G	p.Asn807Lys	p.N807K	ENST00000399503	NM_005921.1	807	aaT/aaG						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67591278	67591278	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			867	180	213	1	ENST00000274335.5:c.1776G>T	p.Lys592Asn	p.K592N	ENST00000274335		592	aaG/aaT						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67593380	67593380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1264	83	326	0	ENST00000274335.5:c.2126C>A	p.Ser709Tyr	p.S709Y	ENST00000274335		709	tCc/tAc						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86681164	86681164	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1130	91	309	0	ENST00000274376.6:c.2805A>C	p.Lys935Asn	p.K935N	ENST00000274376	NM_002890.2	935	aaA/aaC						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86686647	86686647	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1304	191	350	0	ENST00000274376.6:c.3091G>T	p.Glu1031Ter	p.E1031*	ENST00000274376	NM_002890.2	1031	Gaa/Taa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164554	112164554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			531	29	147	0	ENST00000257430.4:c.1628T>C	p.Val543Ala	p.V543A	ENST00000257430	NM_000038.5	543	gTt/gCt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174956	112174956	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			828	134	262	0	ENST00000257430.4:c.3665C>A	p.Ser1222Ter	p.S1222*	ENST00000257430	NM_000038.5	1222	tCa/tAa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175982	112175982	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			721	58	222	0	ENST00000257430.4:c.4691T>G	p.Leu1564Ter	p.L1564*	ENST00000257430	NM_000038.5	1564	tTa/tGa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112179011	112179011	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			924	70	271	0	ENST00000257430.4:c.7720C>A	p.Leu2574Ile	p.L2574I	ENST00000257430	NM_000038.5	2574	Ctt/Att						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176637645	176637645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			990	83	363	0	ENST00000439151.2:c.2245G>T	p.Asp749Tyr	p.D749Y	ENST00000439151	NM_022455.4	749	Gat/Tat						NEWRECORD																																																																									
IRF4	3662	MSKCC	GRCh37	6	401564	401564	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1019	62	344	0	ENST00000380956.4:c.886G>T	p.Glu296Ter	p.E296*	ENST00000380956	NM_001195286.1	296	Gag/Tag						NEWRECORD																																																																									
E2F3	1871	MSKCC	GRCh37	6	20483060	20483060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			971	81	274	0	ENST00000346618.3:c.793G>A	p.Glu265Lys	p.E265K	ENST00000346618	NM_001949.4	265	Gag/Aag						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32183070	32183070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			807	153	338	0	ENST00000375023.3:c.1954C>T	p.Pro652Ser	p.P652S	ENST00000375023	NM_004557.3	652	Cct/Tct						NEWRECORD																																																																									
PRDM1	639	MSKCC	GRCh37	6	106555057	106555057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			810	85	208	0	ENST00000369096.4:c.2174G>A	p.Arg725Gln	p.R725Q	ENST00000369096	NM_001198.3	725	cGa/cAa						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117629975	117629975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			942	90	275	0	ENST00000368508.3:c.6551G>T	p.Arg2184Ile	p.R2184I	ENST00000368508	NM_002944.2	2184	aGa/aTa						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117641051	117641051	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1139	201	414	0	ENST00000368508.3:c.5920G>T	p.Glu1974Ter	p.E1974*	ENST00000368508	NM_002944.2	1974	Gaa/Taa						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117683877	117683877	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1329	108	407	0	ENST00000368508.3:c.3270T>A	p.Asn1090Lys	p.N1090K	ENST00000368508	NM_002944.2	1090	aaT/aaA						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117706936	117706936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1315	112	340	0	ENST00000368508.3:c.2214G>T	p.Glu738Asp	p.E738D	ENST00000368508	NM_002944.2	738	gaG/gaT						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117710586	117710586	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			932	96	281	0	ENST00000368508.3:c.1686G>T	p.Gln562His	p.Q562H	ENST00000368508	NM_002944.2	562	caG/caT						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117714464	117714464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			918	76	281	0	ENST00000368508.3:c.1185G>T	p.Glu395Asp	p.E395D	ENST00000368508	NM_002944.2	395	gaG/gaT						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117715380	117715380	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1062	87	371	0	ENST00000368508.3:c.1109C>A	p.Ser370Tyr	p.S370Y	ENST00000368508	NM_002944.2	370	tCt/tAt						NEWRECORD																																																																									
IFNGR1	3459	MSKCC	GRCh37	6	137519777	137519777	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			694	60	167	0	ENST00000367739.4:c.862-1G>T		p.X288_splice	ENST00000367739	NM_000416.2	288							NEWRECORD																																																																									
IFNGR1	3459	MSKCC	GRCh37	6	137522105	137522105	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1086	77	246	0	ENST00000367739.4:c.774T>G	p.Phe258Leu	p.F258L	ENST00000367739	NM_000416.2	258	ttT/ttG						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152163749	152163749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			897	129	281	2	ENST00000206249.3:c.470G>A	p.Arg157Gln	p.R157Q	ENST00000206249	NM_000125.3	157	cGa/cAa						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81335667	81335667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1418	121	351	0	ENST00000222390.5:c.1693C>T	p.Leu565Phe	p.L565F	ENST00000222390	NM_000601.4	565	Ctc/Ttc						NEWRECORD																																																																									
CDK6	1021	MSKCC	GRCh37	7	92462625	92462625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			510	130	136	0	ENST00000265734.4:c.13G>A	p.Gly5Ser	p.G5S	ENST00000265734	NM_001259.6	5	Ggc/Agc						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106509723	106509723	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1228	105	326	0	ENST00000359195.3:c.1717G>T	p.Glu573Ter	p.E573*	ENST00000359195	NM_002649.2	573	Gaa/Taa						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106524687	106524687	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			863	127	248	0	ENST00000359195.3:c.2848G>T	p.Asp950Tyr	p.D950Y	ENST00000359195	NM_002649.2	950	Gac/Tac						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128845086	128845086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			788	144	358	0	ENST00000249373.3:c.580G>A	p.Glu194Lys	p.E194K	ENST00000249373	NM_005631.4	194	Gaa/Aaa						NEWRECORD																																																																									
KMT2C	58508	MSKCC	GRCh37	7	151845580	151845580	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1287135873		P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			934	77	253	0	ENST00000262189.6:c.13432C>T	p.Arg4478Ter	p.R4478*	ENST00000262189	NM_170606.2	4478	Cga/Tga						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151945367	151945367	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			315	55	100	0	ENST00000262189.6:c.2152G>T	p.Glu718Ter	p.E718*	ENST00000262189	NM_170606.2	718	Gaa/Taa						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5050770	5050770	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1128	180	320	0	ENST00000381652.3:c.553G>T	p.Asp185Tyr	p.D185Y	ENST00000381652	NM_004972.3	185	Gat/Tat						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5072546	5072546	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			977	80	274	0	ENST00000381652.3:c.1696G>T	p.Glu566Ter	p.E566*	ENST00000381652	NM_004972.3	566	Gaa/Taa						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5126393	5126393	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			812	145	241	0	ENST00000381652.3:c.3238G>T	p.Glu1080Ter	p.E1080*	ENST00000381652	NM_004972.3	1080	Gaa/Taa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8528648	8528648	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1385	97	369	0	ENST00000356435.5:c.484G>T	p.Asp162Tyr	p.D162Y	ENST00000356435		162	Gat/Tat						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8528710	8528710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1073	191	300	0	ENST00000356435.5:c.422G>A	p.Arg141His	p.R141H	ENST00000356435		141	cGc/cAc						NEWRECORD																																																																									
FANCC	2176	MSKCC	GRCh37	9	97897674	97897674	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1112	106	372	0	ENST00000289081.3:c.797G>T	p.Arg266Ile	p.R266I	ENST00000289081	NM_000136.2	266	aGa/aTa						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101909971	101909971	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			987	175	289	0	ENST00000374994.4:c.1291C>A	p.Leu431Ile	p.L431I	ENST00000374994	NM_004612.2	431	Ctt/Att						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139399507	139399507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			726	64	231	0	ENST00000277541.6:c.4636G>A	p.Asp1546Asn	p.D1546N	ENST00000277541	NM_017617.3	1546	Gac/Aac						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63661997	63661997	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1507	226	329	0	ENST00000279873.7:c.101G>T	p.Arg34Ile	p.R34I	ENST00000279873	NM_032199.2	34	aGa/aTa						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70404720	70404720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			991	175	386	0	ENST00000373644.4:c.2234G>A	p.Arg745Gln	p.R745Q	ENST00000373644	NM_030625.2	745	cGa/cAa						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70405491	70405491	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			943	152	313	0	ENST00000373644.4:c.3005C>A	p.Ser1002Ter	p.S1002*	ENST00000373644	NM_030625.2	1002	tCa/tAa						NEWRECORD																																																																									
BMPR1A	657	MSKCC	GRCh37	10	88683246	88683246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			706	127	201	0	ENST00000372037.3:c.1456C>T	p.Arg486Trp	p.R486W	ENST00000372037	NM_004329.2	486	Cgg/Tgg						NEWRECORD																																																																									
RPS6KB2	6199	MSKCC	GRCh37	11	67202491	67202491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1113	104	345	0	ENST00000312629.5:c.1300C>T	p.Arg434Trp	p.R434W	ENST00000312629	NM_003952.2	434	Cgg/Tgg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108124599	108124599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1021	271	368	0	ENST00000278616.4:c.1957C>A	p.Leu653Ile	p.L653I	ENST00000278616	NM_000051.3	653	Ctt/Att						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108153473	108153473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1280	111	325	0	ENST00000278616.4:c.3613C>T	p.Arg1205Cys	p.R1205C	ENST00000278616	NM_000051.3	1205	Cgt/Tgt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108168047	108168047	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1123	65	309	0	ENST00000278616.4:c.4943T>G	p.Val1648Gly	p.V1648G	ENST00000278616	NM_000051.3	1648	gTt/gGt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108216627	108216627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			809	55	208	0	ENST00000278616.4:c.8576C>A	p.Ser2859Tyr	p.S2859Y	ENST00000278616	NM_000051.3	2859	tCt/tAt						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118373178	118373178	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1294	114	423	0	ENST00000534358.1:c.6571C>T	p.Arg2191Ter	p.R2191*	ENST00000534358	NM_005933.3	2191	Cga/Tga						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118374726	118374726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1041	86	376	0	ENST00000534358.1:c.8119C>T	p.Arg2707Trp	p.R2707W	ENST00000534358	NM_005933.3	2707	Cgg/Tgg						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118375181	118375181	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			853	178	354	0	ENST00000534358.1:c.8574G>T	p.Lys2858Asn	p.K2858N	ENST00000534358	NM_005933.3	2858	aaG/aaT						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118377107	118377107	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			986	187	354	0	ENST00000534358.1:c.10500G>T	p.Gln3500His	p.Q3500H	ENST00000534358	NM_005933.3	3500	caG/caT						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	416956	416956	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1199	211	389	0	ENST00000399788.2:c.3594A>C	p.Lys1198Asn	p.K1198N	ENST00000399788	NM_001042603.1	1198	aaA/aaC						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	441077	441077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1275	230	353	0	ENST00000399788.2:c.1681G>A	p.Glu561Lys	p.E561K	ENST00000399788	NM_001042603.1	561	Gag/Aag						NEWRECORD																																																																									
RAD52	5893	MSKCC	GRCh37	12	1023606	1023606	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			966	192	308	0	ENST00000358495.3:c.958G>T	p.Glu320Ter	p.E320*	ENST00000358495	NM_134424.2	320	Gaa/Taa						NEWRECORD																																																																									
CCND2	894	MSKCC	GRCh37	12	4409117	4409117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			961	148	301	0	ENST00000261254.3:c.812C>T	p.Ser271Leu	p.S271L	ENST00000261254	NM_001759.3	271	tCg/tTg						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18435287	18435287	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1361	205	367	0	ENST00000266497.5:c.272C>A	p.Ser91Tyr	p.S91Y	ENST00000266497		91	tCt/tAt						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18446936	18446936	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			922	160	317	0	ENST00000266497.5:c.1021G>T	p.Glu341Ter	p.E341*	ENST00000266497		341	Gaa/Taa						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18573894	18573894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1026	164	348	0	ENST00000266497.5:c.2212C>T	p.Arg738Cys	p.R738C	ENST00000266497		738	Cgt/Tgt						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18644423	18644423	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1258	187	368	0	ENST00000266497.5:c.2601C>A	p.Phe867Leu	p.F867L	ENST00000266497		867	ttC/ttA						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378568	25378568	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1044	190	326	0	ENST00000256078.4:c.430A>C	p.Thr144Pro	p.T144P	ENST00000256078	NM_033360.2	144	Aca/Cca						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46125024	46125024	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1196	227	337	1	ENST00000334344.6:c.211G>T	p.Glu71Ter	p.E71*	ENST00000334344	NM_152641.2	71	Gaa/Taa						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46287322	46287322	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			794	168	238	0	ENST00000334344.6:c.5267T>G	p.Phe1756Cys	p.F1756C	ENST00000334344	NM_152641.2	1756	tTt/tGt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49425520	49425520	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1290	199	425	0	ENST00000301067.7:c.12968T>C	p.Leu4323Ser	p.L4323S	ENST00000301067	NM_003482.3	4323	tTa/tCa						NEWRECORD																																																																									
CDK4	1019	MSKCC	GRCh37	12	58142372	58142372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1181	221	283	0	ENST00000257904.6:c.848G>A	p.Arg283Gln	p.R283Q	ENST00000257904	NM_000075.3	283	cGa/cAa						NEWRECORD																																																																									
IGF1	3479	MSKCC	GRCh37	12	102874103	102874103	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1282	189	332	0	ENST00000307046.8:c.57C>A	p.Phe19Leu	p.F19L	ENST00000307046	NM_001111285.1	19	ttC/ttA						NEWRECORD																																																																									
PTPN11	5781	MSKCC	GRCh37	12	112888257	112888257	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			896	177	346	0	ENST00000351677.2:c.273G>T	p.Lys91Asn	p.K91N	ENST00000351677	NM_002834.3	91	aaG/aaT						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28626735	28626735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1167	68	406	0	ENST00000241453.7:c.561G>T	p.Glu187Asp	p.E187D	ENST00000241453	NM_004119.2	187	gaG/gaT						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28644722	28644722	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			773	63	315	0	ENST00000241453.7:c.71C>A	p.Thr24Asn	p.T24N	ENST00000241453	NM_004119.2	24	aCt/aAt						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	29004305	29004305	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			876	104	247	0	ENST00000282397.4:c.989-1G>T		p.X330_splice	ENST00000282397	NM_002019.4	330							NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32914877	32914877	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			945	121	282	0	ENST00000380152.3:c.6385G>T	p.Glu2129Ter	p.E2129*	ENST00000380152		2129	Gaa/Taa						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32937357	32937357	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			935	81	276	0	ENST00000380152.3:c.8018A>C	p.Lys2673Thr	p.K2673T	ENST00000380152		2673	aAa/aCa						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48941657	48941657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1107	65	281	2	ENST00000267163.4:c.967G>T	p.Glu323Ter	p.E323*	ENST00000267163	NM_000321.2	323	Gaa/Taa						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73337650	73337650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1319	111	357	0	ENST00000377767.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000377767	NM_014953.3	689	cGa/cAa						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95577791	95577791	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			880	121	246	0	ENST00000343455.3:c.2119G>A	p.Glu707Lys	p.E707K	ENST00000343455	NM_177438.2	707	Gaa/Aaa						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95592991	95592991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1440	100	370	0	ENST00000343455.3:c.829G>A	p.Ala277Thr	p.A277T	ENST00000343455	NM_177438.2	277	Gca/Aca						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91346819	91346819	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140387675		P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1069	166	387	0	ENST00000355112.3:c.3427G>A	p.Glu1143Lys	p.E1143K	ENST00000355112	NM_000057.2	1143	Gaa/Aaa						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99500588	99500588	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150801101		P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			701	113	244	0	ENST00000268035.6:c.4021G>A	p.Asp1341Asn	p.D1341N	ENST00000268035	NM_000875.3	1341	Gac/Aac						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3777750	3777750	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			943	201	408	0	ENST00000262367.5:c.7298A>G	p.Asp2433Gly	p.D2433G	ENST00000262367	NM_004380.2	2433	gAc/gGc						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67663371	67663371	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139828150		P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			913	65	278	0	ENST00000264010.4:c.1772C>T	p.Thr591Met	p.T591M	ENST00000264010	NM_006565.3	591	aCg/aTg						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89871709	89871709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144560850		P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			776	155	322	0	ENST00000389301.3:c.688G>A	p.Val230Ile	p.V230I	ENST00000389301	NM_000135.2	230	Gtc/Atc						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16047005	16047005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			884	174	353	0	ENST00000268712.3:c.1088G>T	p.Gly363Val	p.G363V	ENST00000268712	NM_006311.3	363	gGg/gTg						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29684058	29684058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1143	178	299	0	ENST00000358273.4:c.7819G>A	p.Glu2607Lys	p.E2607K	ENST00000358273	NM_001042492.2	2607	Gaa/Aaa						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41245988	41245988	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1116	175	402	0	ENST00000357654.3:c.1560A>C	p.Lys520Asn	p.K520N	ENST00000357654	NM_007294.3	520	aaA/aaC						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2216737	2216737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	47	213	0	ENST00000398665.3:c.2381G>A	p.Arg794Lys	p.R794K	ENST00000398665	NM_032482.2	794	aGg/aAg						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5222203	5222203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			744	72	300	0	ENST00000357368.4:c.3132G>T	p.Met1044Ile	p.M1044I	ENST00000357368	NM_002850.3	1044	atG/atT						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5265097	5265097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			742	64	404	0	ENST00000357368.4:c.490C>T	p.Pro164Ser	p.P164S	ENST00000357368	NM_002850.3	164	Cct/Tct						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5273593	5273593	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs146675930		P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			485	66	258	0	ENST00000357368.4:c.239C>T	p.Thr80Met	p.T80M	ENST00000357368	NM_002850.3	80	aCg/aTg						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10262107	10262107	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			992	91	442	0	ENST00000340748.4:c.2184G>T	p.Lys728Asn	p.K728N	ENST00000340748		728	aaG/aaT						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15355074	15355074	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			534	112	199	0	ENST00000263377.2:c.2549A>C	p.His850Pro	p.H850P	ENST00000263377	NM_058243.2	850	cAt/cCt						NEWRECORD																																																																									
CCNE1	898	MSKCC	GRCh37	19	30308339	30308339	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1205	89	360	0	ENST00000262643.3:c.353A>C	p.Lys118Thr	p.K118T	ENST00000262643	NM_001238.2	118	aAa/aCa						NEWRECORD																																																																									
CCNE1	898	MSKCC	GRCh37	19	30311662	30311662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1171	99	417	0	ENST00000262643.3:c.516C>A	p.Phe172Leu	p.F172L	ENST00000262643	NM_001238.2	172	ttC/ttA						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31024619	31024619	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1143	100	344	0	ENST00000375687.4:c.4104G>T	p.Lys1368Asn	p.K1368N	ENST00000375687	NM_015338.5	1368	aaG/aaT						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31375120	31375120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			983	73	365	1	ENST00000328111.2:c.517G>A	p.Asp173Asn	p.D173N	ENST00000328111	NM_006892.3	173	Gac/Aac						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41408920	41408920	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1010	75	331	0	ENST00000373198.4:c.506C>A	p.Ser169Ter	p.S169*	ENST00000373198	NM_133170.3	169	tCa/tAa						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39931668	39931668	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			739	252	175	0	ENST00000378444.4:c.2931C>A	p.Phe977Leu	p.F977L	ENST00000378444	NM_001123385.1	977	ttC/ttA						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47044502	47044502	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			712	85	184	0	ENST00000329236.7:c.1765G>T	p.Glu589Ter	p.E589*	ENST00000329236	NM_001204466.1	589	Gaa/Taa						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66942723	66942723	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			905	80	248	0	ENST00000374690.3:c.2504A>G	p.Tyr835Cys	p.Y835C	ENST00000374690	NM_000044.3	835	tAc/tGc						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76972708	76972708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			766	82	197	0	ENST00000373344.5:c.33G>T	p.Leu11Phe	p.L11F	ENST00000373344	NM_000489.3	11	ttG/ttT						NEWRECORD																																																																									
XIAP	331	MSKCC	GRCh37	X	123034377	123034377	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			564	189	195	0	ENST00000355640.3:c.1134A>C	p.Glu378Asp	p.E378D	ENST00000355640		378	gaA/gaC						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123210320	123210320	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			488	204	119	0	ENST00000218089.9:c.2672A>C	p.Lys891Thr	p.K891T	ENST00000218089	NM_001042749.1	891	aAg/aCg						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123224793	123224793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001808-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			816	111	178	0	ENST00000218089.9:c.3557G>A	p.Arg1186Gln	p.R1186Q	ENST00000218089	NM_001042749.1	1186	cGa/cAa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151868398	151868398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002106-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			887	101	511	0	ENST00000262189.6:c.9404G>T	p.Gly3135Val	p.G3135V	ENST00000262189	NM_170606.2	3135	gGa/gTa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579366	7579369	+	frameshift_variant	Frame_Shift_Del	DEL	GTAG	GTAG	-			P-0002106-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	153	297	0	ENST00000269305.4:c.318_321del	p.Ser106ArgfsTer16	p.S106Rfs*16	ENST00000269305	NM_001126112.2	106	agCTAC/ag						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151945549	151945553	+	protein_altering_variant	In_Frame_Del	DEL	GTAAC	GTAAC	TG			P-0002106-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	73	98	0	ENST00000262189.6:c.1966_1970delinsCA	p.Val656_Thr657delinsGln	p.V656_T657delinsQ	ENST00000262189	NM_170606.2	656	GTTACa/CAa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952138	178952138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	40	320	2	ENST00000263967.3:c.3193C>T	p.His1065Tyr	p.H1065Y	ENST00000263967	NM_006218.2	1065	Cat/Tat						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	132	621	0	ENST00000269305.4:c.645T>A	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agA						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16012151	16012151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	79	625	0	ENST00000268712.3:c.2131G>A	p.Asp711Asn	p.D711N	ENST00000268712	NM_006311.3	711	Gat/Aat						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242469	55242470	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC	rs397517096		P-0003495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	97	481	0	ENST00000275493.2:c.2239_2240delinsCC	p.Leu747Pro	p.L747P	ENST00000275493	NM_005228.3	747	TTa/CCa						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47041720	47041720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			451	52	274	0	ENST00000329236.7:c.1711C>T	p.Gln571Ter	p.Q571*	ENST00000329236	NM_001204466.1	571	Caa/Taa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			737	291	371	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc						NEWRECORD																																																																									
FUBP1	8880	MSKCC	GRCh37	1	78425878	78425878	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	33	185	0	ENST00000370768.2:c.1567C>A	p.Pro523Thr	p.P523T	ENST00000370768	NM_003902.3	523	Cct/Act						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198266831	198266831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			615	66	321	0	ENST00000335508.6:c.2101G>T	p.Val701Phe	p.V701F	ENST00000335508	NM_012433.2	701	Gtt/Ttt						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198267400	198267400	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			636	51	351	0	ENST00000335508.6:c.1957A>C	p.Lys653Gln	p.K653Q	ENST00000335508	NM_012433.2	653	Aaa/Caa						NEWRECORD																																																																									
MITF	4286	MSKCC	GRCh37	3	70014114	70014114	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			740	53	376	0	ENST00000352241.4:c.1278C>G	p.Ser426Arg	p.S426R	ENST00000352241	NM_198159.2	426	agC/agG						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55573368	55573368	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			702	80	354	0	ENST00000288135.5:c.1030G>C	p.Glu344Gln	p.E344Q	ENST00000288135	NM_000222.2	344	Gaa/Caa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187549752	187549752	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			680	44	395	0	ENST00000441802.2:c.4489A>G	p.Arg1497Gly	p.R1497G	ENST00000441802	NM_005245.3	1497	Aga/Gga						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2952953	2952953	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	27	259	0	ENST00000396946.4:c.2987G>T	p.Gly996Val	p.G996V	ENST00000396946	NM_032415.4	996	gGa/gTa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8484233	8484233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			700	43	374	0	ENST00000356435.5:c.3299C>A	p.Thr1100Lys	p.T1100K	ENST00000356435		1100	aCg/aAg						NEWRECORD																																																																									
FGF3	2248	MSKCC	GRCh37	11	69625090	69625090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	31	177	0	ENST00000334134.2:c.703G>A	p.Glu235Lys	p.E235K	ENST00000334134	NM_005247.2	235	Gag/Aag						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110435598	110435598	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	17	98	0	ENST00000375856.3:c.2803G>T	p.Ala935Ser	p.A935S	ENST00000375856	NM_003749.2	935	Gcg/Tcg						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3831212	3831212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			550	37	316	2	ENST00000262367.5:c.1669G>A	p.Ala557Thr	p.A557T	ENST00000262367	NM_004380.2	557	Gcc/Acc						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76778857	76778857	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			717	39	427	0	ENST00000373344.5:c.6722T>A	p.Leu2241His	p.L2241H	ENST00000373344	NM_000489.3	2241	cTt/cAt						NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100613424	100613424	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	62	231	0	ENST00000308731.7:c.976G>T	p.Asp326Tyr	p.D326Y	ENST00000308731	NM_000061.2	326	Gac/Tac						NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100615625	100615625	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147036606		P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			690	105	465	0	ENST00000308731.7:c.707G>A	p.Arg236Gln	p.R236Q	ENST00000308731	NM_000061.2	236	cGg/cAg						NEWRECORD																																																																									
SH2D1A	4068	MSKCC	GRCh37	X	123499637	123499637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			805	57	350	0	ENST00000371139.4:c.164G>T	p.Arg55Leu	p.R55L	ENST00000371139	NM_001114937.2	55	cGa/cTa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27057924	27057924	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			538	40	304	0	ENST00000324856.7:c.1636delC	p.Gln546ArgfsTer73	p.Q546Rfs*73	ENST00000324856	NM_006015.4	544	caC/ca						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9546697	9546697	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			587	47	319	0	ENST00000353224.5:c.1325del	p.Pro442GlnfsTer36	p.P442Qfs*36	ENST00000353224	NM_177990.2	442	cCa/ca						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0003793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	113	187	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577586	7577586	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	370	304	0	ENST00000269305.4:c.695T>A	p.Ile232Asn	p.I232N	ENST00000269305	NM_001126112.2	232	aTc/aAc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40730859	40730859	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	959	245	0	ENST00000373198.4:c.3676C>T	p.Arg1226Ter	p.R1226*	ENST00000373198	NM_133170.3	1226	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			991	317	694	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602290	10602290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			434	335	487	0	ENST00000171111.5:c.1288G>T	p.Gly430Cys	p.G430C	ENST00000171111	NM_203500.1	430	Ggc/Tgc						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89480327	89480327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1007	124	702	0	ENST00000336596.2:c.2164C>A	p.Gln722Lys	p.Q722K	ENST00000336596	NM_005233.5	722	Cag/Aag						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66230848	66230848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1141	122	718	0	ENST00000273854.3:c.2123C>T	p.Thr708Ile	p.T708I	ENST00000273854	NM_004439.5	708	aCc/aTc						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149439396	149439396	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			679	109	537	0	ENST00000286301.3:c.1999T>C	p.Cys667Arg	p.C667R	ENST00000286301	NM_005211.3	667	Tgc/Cgc						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91328199	91328199	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			984	333	590	0	ENST00000355112.3:c.2711T>A	p.Met904Lys	p.M904K	ENST00000355112	NM_000057.2	904	aTg/aAg						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5240279	5240279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			553	333	590	0	ENST00000357368.4:c.1635G>T	p.Trp545Cys	p.W545C	ENST00000357368	NM_002850.3	545	tgG/tgT						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29684105	29684106	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0002153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			980	119	548	0	ENST00000358273.4:c.7867_7868del	p.Leu2623SerfsTer10	p.L2623Sfs*10	ENST00000358273	NM_001042492.2	2622	gtTCta/gtta						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1219350	1219363	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCATGCAGGAAA	TGGCATGCAGGAAA	-			P-0002153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			602	293	508	0	ENST00000326873.7:c.404_417del	p.Gly135AlafsTer23	p.G135Afs*23	ENST00000326873	NM_000455.4	134	tgTGGCATGCAGGAAAtg/tgtg						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29754956	29754956	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	124	295	0	ENST00000389048.3:c.979G>C	p.Ala327Pro	p.A327P	ENST00000389048	NM_004304.4	327	Gct/Cct						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0004508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	153	607	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc						NEWRECORD																																																																									
PIK3R2	5296	MSKCC	GRCh37	19	18278049	18278049	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	136	511	0	ENST00000222254.8:c.1669G>T	p.Asp557Tyr	p.D557Y	ENST00000222254	NM_005027.3	557	Gac/Tac						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49425080	49425086	+	frameshift_variant	Frame_Shift_Del	DEL	TTGCCCG	TTGCCCG	-			P-0004508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	175	621	0	ENST00000301067.7:c.13402_13408del	p.Ala4469MetfsTer48	p.A4469Mfs*48	ENST00000301067	NM_003482.3	4468	CGGGCAAag/ag						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49425091	49425103	+	protein_altering_variant	In_Frame_Del	DEL	AGCTTCTGCAAGA	AGCTTCTGCAAGA	T			P-0004508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	169	604	0	ENST00000301067.7:c.13385_13397delinsA	p.Leu4462_Leu4466delinsGln	p.L4462_L4466delinsQ	ENST00000301067	NM_003482.3	4462	cTCTTGCAGAAGCTa/cAa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0001442-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			321	93	244	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0001442-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	219	342	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0001442-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			317	203	335	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242511	55242511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0001442-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			343	114	273	0	ENST00000275493.2:c.2281G>T	p.Asp761Tyr	p.D761Y	ENST00000275493	NM_005228.3	761	Gat/Tat						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0003213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	88	280	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0003213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	169	268	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0003213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	66	216	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27099030	27099030	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	101	287	0	ENST00000324856.7:c.3446C>G	p.Ser1149Ter	p.S1149*	ENST00000324856	NM_006015.4	1149	tCa/tGa						NEWRECORD																																																																									
FGFR3	2261	MSKCC	GRCh37	4	1803147	1803147	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	63	228	0	ENST00000260795.2:c.499C>G	p.Pro167Ala	p.P167A	ENST00000260795		167	Ccg/Gcg						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157505550	157505550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	54	156	0	ENST00000346085.5:c.3531G>T	p.Lys1177Asn	p.K1177N	ENST00000346085	NM_020732.3	1177	aaG/aaT						NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	135	419	0	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53227760	53227760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	98	429	0	ENST00000375401.3:c.2428G>A	p.Glu810Lys	p.E810K	ENST00000375401	NM_004187.3	810	Gag/Aag						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76855903	76855903	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0003213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	105	339	0	ENST00000373344.5:c.5697G>C	p.Lys1899Asn	p.K1899N	ENST00000373344	NM_000489.3	1899	aaG/aaC						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47028833	47028851	+	frameshift_variant	Frame_Shift_Del	DEL	GCGAGTATGGCAGCCAGGA	GCGAGTATGGCAGCCAGGA	-			P-0003213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	156	329	0	ENST00000329236.7:c.138_156del	p.Glu47AlafsTer32	p.E47Afs*32	ENST00000329236	NM_001204466.1	46	cGCGAGTATGGCAGCCAGGAg/cg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175324	112175324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			248	39	342	0	ENST00000257430.4:c.4033G>T	p.Glu1345Ter	p.E1345*	ENST00000257430	NM_000038.5	1345	Gaa/Taa						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66467635	66467635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			209	46	439	0	ENST00000273854.3:c.634C>A	p.Leu212Ile	p.L212I	ENST00000273854	NM_004439.5	212	Ctt/Att						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173803	112173803	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			248	124	401	0	ENST00000257430.4:c.2512A>T	p.Arg838Ter	p.R838*	ENST00000257430	NM_000038.5	838	Aga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175336	112175336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	37	337	0	ENST00000257430.4:c.4045C>T	p.His1349Tyr	p.H1349Y	ENST00000257430	NM_000038.5	1349	Cac/Tac						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139412289	139412289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000641-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			399	102	401	0	ENST00000277541.6:c.1356C>A	p.Asp452Glu	p.D452E	ENST00000277541	NM_017617.3	452	gaC/gaA						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27057976	27057976	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	47	416	0	ENST00000324856.7:c.1684C>T	p.Gln562Ter	p.Q562*	ENST00000324856	NM_006015.4	562	Cag/Tag						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65307212	65307212	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150021823		P-0002149-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	54	337	0	ENST00000342505.4:c.2476C>T	p.Arg826Cys	p.R826C	ENST00000342505	NM_002227.2	826	Cgc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0002149-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	199	335	0	ENST00000269305.4:c.994-1G>T		p.X332_splice	ENST00000269305	NM_001126112.2	332							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0000058-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			156	348	357	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc						NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48023122	48023122	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	201	414	0	ENST00000234420.5:c.547T>A	p.Leu183Ile	p.L183I	ENST00000234420	NM_000179.2	183	Tta/Ata						NEWRECORD																																																																									
HOXB13	10481	MSKCC	GRCh37	17	46805633	46805633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	350	417	1	ENST00000290295.7:c.323C>A	p.Ala108Glu	p.A108E	ENST00000290295	NM_006361.5	108	gCg/gAg						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99193554	99193554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	181	216	0	ENST00000074304.5:c.2749del	p.Glu917SerfsTer27	p.E917Sfs*27	ENST00000074304	NM_001134224.1	917	Gag/ag						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43608994	43609008	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGCCCTCAGGGGGC	CTGCCCTCAGGGGGC	-			P-0003750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	168	377	0	ENST00000355710.3:c.1760-10_1764del		p.X587_splice	ENST00000355710	NM_020975.4	587							NEWRECORD																																																																									
DNAJB1	3337	MSKCC	GRCh37	19	14629033	14629035	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0003750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	103	348	0	ENST00000254322.2:c.127_129del	p.Glu43del	p.E43del	ENST00000254322	NM_006145.1	43	GAG/-						NEWRECORD																																																																									
MRE11A	4361	MSKCC	GRCh37	11	94203775	94203775	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001898-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	49	350	0	ENST00000323929.3:c.879G>T	p.Lys293Asn	p.K293N	ENST00000323929	NM_005591.3	293	aaG/aaT						NEWRECORD																																																																									
SH2D1A	4068	MSKCC	GRCh37	X	123499637	123499637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001898-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	98	498	0	ENST00000371139.4:c.164G>A	p.Arg55Gln	p.R55Q	ENST00000371139	NM_001114937.2	55	cGa/cAa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	338	379	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	185	232	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66270189	66270189	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	229	322	0	ENST00000273854.3:c.1693G>T	p.Ala565Ser	p.A565S	ENST00000273854	NM_004439.5	565	Gca/Tca						NEWRECORD																																																																									
BCL6	604	MSKCC	GRCh37	3	187446885	187446885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	146	331	0	ENST00000232014.4:c.1308G>T	p.Glu436Asp	p.E436D	ENST00000232014	NM_001130845.1	436	gaG/gaT						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176722039	176722039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	105	285	1	ENST00000439151.2:c.7670G>A	p.Gly2557Glu	p.G2557E	ENST00000439151	NM_022455.4	2557	gGa/gAa						NEWRECORD																																																																									
HIST1H3J	8356	MSKCC	GRCh37	6	27858446	27858446	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	134	507	0	ENST00000359303.2:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000359303	NM_003535.2	42	tAc/tGc						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118343997	118343997	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	124	344	1	ENST00000534358.1:c.2123A>C	p.His708Pro	p.H708P	ENST00000534358	NM_005933.3	708	cAc/cCc						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115120684	115120684	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	144	438	0	ENST00000257566.3:c.322G>T	p.Glu108Ter	p.E108*	ENST00000257566	NM_016569.3	108	Gag/Tag						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72821290	72821290	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	157	511	0	ENST00000268489.5:c.10885C>G	p.Pro3629Ala	p.P3629A	ENST00000268489	NM_006885.3	3629	Ccc/Gcc						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72821409	72821409	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	111	490	0	ENST00000268489.5:c.10766C>G	p.Ser3589Cys	p.S3589C	ENST00000268489	NM_006885.3	3589	tCt/tGt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602340	10602340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	239	345	0	ENST00000171111.5:c.1238G>T	p.Arg413Leu	p.R413L	ENST00000171111	NM_203500.1	413	cGt/cTt						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17954190	17954190	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	301	377	0	ENST00000458235.1:c.419A>G	p.Gln140Arg	p.Q140R	ENST00000458235	NM_000215.3	140	cAg/cGg						NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100617565	100617565	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	156	414	0	ENST00000308731.7:c.504G>C	p.Leu168Phe	p.L168F	ENST00000308731	NM_000061.2	168	ttG/ttC						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15271639	15271649	+	frameshift_variant	Frame_Shift_Del	DEL	GACCAGTCTGA	GACCAGTCTGA	-			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	206	395	0	ENST00000263388.2:c.6790_6800del	p.Ser2264ArgfsTer5	p.S2264Rfs*5	ENST00000263388	NM_000435.2	2264	TCAGACTGGTCc/c						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81355311	81355311	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	230	312	0	ENST00000222390.5:c.1063del	p.Arg355GlufsTer56	p.R355Efs*56	ENST00000222390	NM_000601.4	355	Cga/ga						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0000390-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			79	82	386	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0000390-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			92	22	584	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000390-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			74	42	320	0	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			602	255	558	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	405	794	1	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15292438	15292438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			736	88	627	1	ENST00000263388.2:c.2741C>T	p.Pro914Leu	p.P914L	ENST00000263388	NM_000435.2	914	cCa/cTa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112178414	112178414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1099	97	635	0	ENST00000257430.4:c.7123C>T	p.Gln2375Ter	p.Q2375*	ENST00000257430	NM_000038.5	2375	Caa/Taa						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176618933	176618933	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1201	135	847	0	ENST00000439151.2:c.976C>G	p.Leu326Val	p.L326V	ENST00000439151	NM_022455.4	326	Ctc/Gtc						NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056132	26056132	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			897	128	646	0	ENST00000343677.2:c.525G>C	p.Lys175Asn	p.K175N	ENST00000343677	NM_005319.3	175	aaG/aaC						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2983974	2983974	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			809	89	1099	0	ENST00000396946.4:c.556G>C	p.Glu186Gln	p.E186Q	ENST00000396946	NM_032415.4	186	Gag/Cag						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115111972	115111972	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0002366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			240	141	246	0	ENST00000257566.3:c.1768C>T	p.Gln590Ter	p.Q590*	ENST00000257566	NM_016569.3	590	Cag/Tag						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133250217	133250217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			840	161	753	1	ENST00000320574.5:c.1303G>A	p.Asp435Asn	p.D435N	ENST00000320574	NM_006231.2	435	Gat/Aat						NEWRECORD																																																																									
EIF1AX	1964	MSKCC	GRCh37	X	20148708	20148708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			985	101	631	0	ENST00000379607.5:c.355G>A	p.Asp119Asn	p.D119N	ENST00000379607	NM_001412.3	119	Gat/Aat						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001979-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	86	227	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81990351	81990351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	27	407	0	ENST00000359376.3:c.3622G>A	p.Glu1208Lys	p.E1208K	ENST00000359376	NM_002661.3	1208	Gaa/Aaa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	213	425	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55370841	55370841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	103	196	0	ENST00000297316.4:c.143C>T	p.Ala48Val	p.A48V	ENST00000297316	NM_022454.3	48	gCg/gTg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0003789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	89	307	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38952412	38952412	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	235	399	0	ENST00000357387.3:c.3013C>A	p.Pro1005Thr	p.P1005T	ENST00000357387	NM_152756.3	1005	Cca/Aca						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114911483	114911483	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0003789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	150	206	0	ENST00000543371.1:c.1002-1G>C		p.X334_splice	ENST00000543371	NM_001198531.1	334							NEWRECORD																																																																									
FGF4	2249	MSKCC	GRCh37	11	69589527	69589527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	72	84	0	ENST00000168712.1:c.326C>T	p.Ala109Val	p.A109V	ENST00000168712	NM_002007.2	109	gCg/gTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578552	7578552	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0003789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	139	269	0	ENST00000269305.4:c.378C>A	p.Tyr126Ter	p.Y126*	ENST00000269305	NM_001126112.2	126	taC/taA						NEWRECORD																																																																									
DAXX	1616	MSKCC	GRCh37	6	33288749	33288749	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	27	326	0	ENST00000374542.5:c.803A>G	p.Asn268Ser	p.N268S	ENST00000374542	NM_001141970.1	268	aAc/aGc						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76778800	76778800	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	57	503	0	ENST00000373344.5:c.6779A>G	p.His2260Arg	p.H2260R	ENST00000373344	NM_000489.3	2260	cAc/cGc						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64573786	64573786	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	36	313	0	ENST00000337652.1:c.982delT	p.Tyr328ThrfsTer45	p.Y328Tfs*45	ENST00000337652	NM_130803.2	328	Tac/ac						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115956	8115956	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000595-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	109	144	0	ENST00000346208.3:c.1305delC	p.Ser436ProfsTer39	p.S436Pfs*39	ENST00000346208		434	caC/ca						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65312353	65312353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002984-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			578	151	372	2	ENST00000342505.4:c.1966G>A	p.Val656Ile	p.V656I	ENST00000342505	NM_002227.2	656	Gtc/Atc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0002984-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			195	470	460	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25982371	25982371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002984-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			177	221	287	0	ENST00000435504.4:c.919C>T	p.Leu307Phe	p.L307F	ENST00000435504		307	Ctc/Ttc						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29451792	29451792	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002984-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	259	370	0	ENST00000389048.3:c.2773G>T	p.Gly925Ter	p.G925*	ENST00000389048	NM_004304.4	925	Gga/Tga						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110435363	110435363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002984-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			58	56	137	0	ENST00000375856.3:c.3038C>T	p.Pro1013Leu	p.P1013L	ENST00000375856	NM_003749.2	1013	cCg/cTg						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52651282	52651282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000676-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	195	214	0	ENST00000394830.3:c.1814C>T	p.Ser605Phe	p.S605F	ENST00000394830	NM_018313.4	605	tCc/tTc						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52651430	52651430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000676-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	240	357	0	ENST00000394830.3:c.1666C>T	p.Pro556Ser	p.P556S	ENST00000394830	NM_018313.4	556	Cct/Tct						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142272163	142272163	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000676-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			305	283	223	0	ENST00000350721.4:c.2711C>G	p.Ser904Cys	p.S904C	ENST00000350721	NM_001184.3	904	tCt/tGt						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8486037	8486037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000676-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	149	258	0	ENST00000356435.5:c.2780C>T	p.Ser927Leu	p.S927L	ENST00000356435		927	tCa/tTa						NEWRECORD																																																																									
FGF3	2248	MSKCC	GRCh37	11	69633620	69633620	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000676-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			45	16	17	0	ENST00000334134.2:c.82G>C	p.Asp28His	p.D28H	ENST00000334134	NM_005247.2	28	Gat/Cat						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118342841	118342841	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000676-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	101	168	0	ENST00000534358.1:c.967G>C	p.Glu323Gln	p.E323Q	ENST00000534358	NM_005933.3	323	Gaa/Caa						NEWRECORD																																																																									
HNF1A	6927	MSKCC	GRCh37	12	121434409	121434409	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000676-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			666	98	254	0	ENST00000257555.6:c.1173G>C	p.Gln391His	p.Q391H	ENST00000257555		391	caG/caC						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577567	7577567	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000676-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	118	124	0	ENST00000269305.4:c.714T>G	p.Cys238Trp	p.C238W	ENST00000269305	NM_001126112.2	238	tgT/tgG						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602923	10602923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000676-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	160	179	0	ENST00000171111.5:c.655G>A	p.Glu219Lys	p.E219K	ENST00000171111	NM_203500.1	219	Gag/Aag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0004342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	44	439	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21970979	21970979	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs6413464		P-0002997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			105	78	508	0	ENST00000304494.5:c.379G>T	p.Ala127Ser	p.A127S	ENST00000304494	NM_000077.4	127	Gca/Tca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	103	524	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87570263	87570263	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	36	288	0	ENST00000277120.3:c.2003A>T	p.Gln668Leu	p.Q668L	ENST00000277120		668	cAg/cTg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	603	470	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0002323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			225	321	471	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40790038	40790038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	600	382	0	ENST00000373198.4:c.2693C>T	p.Thr898Met	p.T898M	ENST00000373198	NM_133170.3	898	aCg/aTg						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			233	488	435	0	ENST00000349496.5:c.94G>C	p.Asp32His	p.D32H	ENST00000349496	NM_001904.3	32	Gac/Cac						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266679	41266679	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	393	334	0	ENST00000349496.5:c.476T>C	p.Leu159Pro	p.L159P	ENST00000349496	NM_001904.3	159	cTg/cCg						NEWRECORD																																																																									
PAX5	5079	MSKCC	GRCh37	9	36882084	36882084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			503	122	389	0	ENST00000358127.4:c.929C>T	p.Thr310Met	p.T310M	ENST00000358127	NM_001280556.1	310	aCg/aTg						NEWRECORD																																																																									
JUN	3725	MSKCC	GRCh37	1	59247830	59247831	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0002323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			409	503	615	0	ENST00000371222.2:c.912_913del	p.Gln304HisfsTer5	p.Q304Hfs*5	ENST00000371222	NM_002228.3	304	caGGtg/catg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004052-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			31	26	402	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139405174	139405174	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004052-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			31	11	379	0	ENST00000277541.6:c.2671T>C	p.Tyr891His	p.Y891H	ENST00000277541	NM_017617.3	891	Tac/Cac						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118355614	118355614	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004052-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			37	17	436	0	ENST00000534358.1:c.4256G>C	p.Gly1419Ala	p.G1419A	ENST00000534358	NM_005933.3	1419	gGc/gCc						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29474064	29474064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			668	294	466	0	ENST00000389048.3:c.2111C>A	p.Ala704Asp	p.A704D	ENST00000389048	NM_004304.4	704	gCc/gAc						NEWRECORD																																																																									
BCL6	604	MSKCC	GRCh37	3	187451442	187451442	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	205	348	0	ENST00000449623.1:c.260G>A	p.Trp87Ter	p.W87*	ENST00000449623		87	tGg/tAg						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187521309	187521309	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			632	164	577	0	ENST00000441802.2:c.11846A>T	p.Tyr3949Phe	p.Y3949F	ENST00000441802	NM_005245.3	3949	tAt/tTt						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32187525	32187525	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			435	80	280	0	ENST00000375023.3:c.1354T>A	p.Cys452Ser	p.C452S	ENST00000375023	NM_004557.3	452	Tgc/Agc						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81374323	81374323	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			496	292	428	0	ENST00000222390.5:c.739C>G	p.Pro247Ala	p.P247A	ENST00000222390	NM_000601.4	247	Cct/Gct						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43615036	43615036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			647	108	489	0	ENST00000355710.3:c.2450G>A	p.Arg817His	p.R817H	ENST00000355710	NM_020975.4	817	cGc/cAc						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3790512	3790512	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			661	116	400	0	ENST00000262367.5:c.4021C>T	p.Arg1341Ter	p.R1341*	ENST00000262367	NM_004380.2	1341	Cga/Tga						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9858037	9858037	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			844	152	552	0	ENST00000330684.3:c.3364G>T	p.Gly1122Cys	p.G1122C	ENST00000330684	NM_001134407.1	1122	Ggt/Tgt						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23641459	23641459	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			680	410	608	0	ENST00000261584.4:c.2016A>T	p.Glu672Asp	p.E672D	ENST00000261584	NM_024675.3	672	gaA/gaT						NEWRECORD																																																																									
RARA	5914	MSKCC	GRCh37	17	38512269	38512269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			603	123	375	0	ENST00000254066.5:c.1180C>T	p.Arg394Trp	p.R394W	ENST00000254066	NM_000964.3	394	Cgg/Tgg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1218447	1218447	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			411	647	471	0	ENST00000326873.7:c.322A>T	p.Lys108Ter	p.K108*	ENST00000326873	NM_000455.4	108	Aaa/Taa						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39921643	39921643	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			605	38	400	0	ENST00000378444.4:c.4177A>T	p.Thr1393Ser	p.T1393S	ENST00000378444	NM_001123385.1	1393	Act/Tct						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			575	533	474	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0000348-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	305	593	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180030314	180030314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000348-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			721	317	551	2	ENST00000261937.6:c.3970C>T	p.Arg1324Trp	p.R1324W	ENST00000261937	NM_182925.4	1324	Cgg/Tgg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242469	55242470	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC	rs397517096		P-0000348-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	1932	296	0	ENST00000275493.2:c.2239_2240delinsCC	p.Leu747Pro	p.L747P	ENST00000275493	NM_005228.3	747	TTa/CCa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0001514-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			767	62	268	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0002873-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			189	232	277	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53246998	53246998	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002873-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			121	249	215	0	ENST00000375401.3:c.502C>T	p.Gln168Ter	p.Q168*	ENST00000375401	NM_004187.3	168	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0003243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			42	8	135	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0003243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			36	13	179	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0003243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			32	18	184	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0000811-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	86	201	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0001766-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	88	551	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151879092	151879092	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	59	251	0	ENST00000262189.6:c.5853T>G	p.Asp1951Glu	p.D1951E	ENST00000262189	NM_170606.2	1951	gaT/gaG						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108115727	108115727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	72	201	0	ENST00000278616.4:c.875C>T	p.Pro292Leu	p.P292L	ENST00000278616	NM_000051.3	292	cCg/cTg						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061204	38061229	+	protein_altering_variant	In_Frame_Del	DEL	CGGCGCAAGTAGCAGCCGTTCTCGAA	CGGCGCAAGTAGCAGCCGTTCTCGAA	TAGCGCTT			P-0004355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	87	193	0	ENST00000250448.2:c.760_785delinsAAGCGCTA	p.Phe254_Arg262delinsLysArgTyr	p.F254_R262delinsKRY	ENST00000250448	NM_004496.3	254	TTCGAGAACGGCTGCTACTTGCGCCGc/AAGCGCTAc						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0003465-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	47	310	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2202720	2202720	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003465-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	24	404	0	ENST00000398665.3:c.729T>G	p.Phe243Leu	p.F243L	ENST00000398665	NM_032482.2	243	ttT/ttG						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37866393	37866393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002196-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			733	79	300	1	ENST00000269571.5:c.698C>T	p.Thr233Ile	p.T233I	ENST00000269571		233	aCt/aTt						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37627361	37627361	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002196-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1135	103	422	3	ENST00000447079.4:c.1280del	p.Leu427CysfsTer9	p.L427Cfs*9	ENST00000447079	NM_015083.1	426	Ttt/tt						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37627744	37627744	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002196-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1100	100	465	0	ENST00000447079.4:c.1661del	p.Leu554CysfsTer56	p.L554Cfs*56	ENST00000447079	NM_015083.1	553	ccT/cc						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3828768	3828768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	336	373	0	ENST00000262367.5:c.1874G>A	p.Arg625His	p.R625H	ENST00000262367	NM_004380.2	625	cGc/cAc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023327	27023327	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	83	99	0	ENST00000324856.7:c.437del	p.Pro146GlnfsTer86	p.P146Qfs*86	ENST00000324856	NM_006015.4	145	Ccc/cc						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098804	178098804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	385	443	0	ENST00000397062.3:c.241G>A	p.Gly81Ser	p.G81S	ENST00000397062	NM_006164.4	81	Ggt/Agt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108206616	108206616	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	305	316	0	ENST00000278616.4:c.8196C>G	p.Phe2732Leu	p.F2732L	ENST00000278616	NM_000051.3	2732	ttC/ttG						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115120617	115120617	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	276	337	0	ENST00000257566.3:c.389G>A	p.Arg130Lys	p.R130K	ENST00000257566	NM_016569.3	130	aGg/aAg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221998	1221998	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	204	335	3	ENST00000326873.7:c.913C>T	p.Gln305Ter	p.Q305*	ENST00000326873	NM_000455.4	305	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057520007		P-0001152-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			116	175	518	0	ENST00000269305.4:c.614A>C	p.Tyr205Ser	p.Y205S	ENST00000269305	NM_001126112.2	205	tAt/tCt						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70120241	70120241	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001152-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			361	135	511	0	ENST00000245479.2:c.1246del	p.Gln416AsnfsTer54	p.Q416Nfs*54	ENST00000245479	NM_000346.3	415	Ccc/cc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0001531-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	276	246	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0001531-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			618	268	250	0	ENST00000257430.4:c.4037C>G	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tGa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175324	112175324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001531-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			645	231	256	0	ENST00000257430.4:c.4033G>T	p.Glu1345Ter	p.E1345*	ENST00000257430	NM_000038.5	1345	Gaa/Taa						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29550460	29550460	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0001531-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	318	203	0	ENST00000358273.4:c.1722-2A>G		p.X574_splice	ENST00000358273	NM_001042492.2	574							NEWRECORD																																																																									
PIK3R3	8503	MSKCC	GRCh37	1	46521477	46521477	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	150	438	0	ENST00000262741.5:c.931C>G	p.Gln311Glu	p.Q311E	ENST00000262741	NM_003629.3	311	Caa/Gaa						NEWRECORD																																																																									
JUN	3725	MSKCC	GRCh37	1	59248055	59248055	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	111	171	0	ENST00000371222.2:c.688C>T	p.Gln230Ter	p.Q230*	ENST00000371222	NM_002228.3	230	Cag/Tag						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29455225	29455225	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs61754865		P-0004057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	98	313	0	ENST00000389048.3:c.2577G>C	p.Glu859Asp	p.E859D	ENST00000389048	NM_004304.4	859	gaG/gaC						NEWRECORD																																																																									
HIST1H3A	8350	MSKCC	GRCh37	6	26020875	26020875	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	447	624	0	ENST00000357647.3:c.158G>C	p.Arg53Pro	p.R53P	ENST00000357647	NM_003529.2	53	cGc/cCc						NEWRECORD																																																																									
RAD21	5885	MSKCC	GRCh37	8	117861203	117861203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1926	180	367	0	ENST00000297338.2:c.1686G>C	p.Gln562His	p.Q562H	ENST00000297338	NM_006265.2	562	caG/caC						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91292986	91292986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	104	267	0	ENST00000355112.3:c.488C>A	p.Ser163Tyr	p.S163Y	ENST00000355112	NM_000057.2	163	tCt/tAt						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23640569	23640569	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	161	338	0	ENST00000261584.4:c.2542G>C	p.Asp848His	p.D848H	ENST00000261584	NM_024675.3	848	Gat/Cat						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	177	233	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15297706	15297706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	243	359	0	ENST00000263388.2:c.1934G>T	p.Cys645Phe	p.C645F	ENST00000263388	NM_000435.2	645	tGc/tTc						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696449	47696449	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000505-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			904	52	239	0	ENST00000347630.2:c.374T>G	p.Phe125Cys	p.F125C	ENST00000347630	NM_001007230.1	125	tTt/tGt						NEWRECORD																																																																									
CUL3	8452	MSKCC	GRCh37	2	225400279	225400279	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000505-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			860	62	177	0	ENST00000264414.4:c.344C>G	p.Ala115Gly	p.A115G	ENST00000264414	NM_003590.4	115	gCt/gGt						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142177822	142177822	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000505-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			613	42	142	0	ENST00000350721.4:c.7481A>C	p.Asp2494Ala	p.D2494A	ENST00000350721	NM_001184.3	2494	gAt/gCt						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37627337	37627340	+	frameshift_variant	Frame_Shift_Del	DEL	AAGG	AAGG	-			P-0000505-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			656	103	158	0	ENST00000447079.4:c.1253_1256del	p.Lys418SerfsTer17	p.K418Sfs*17	ENST00000447079	NM_015083.1	418	AAGGag/ag						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86686665	86686665	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000795-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1091	88	309	0	ENST00000274376.6:c.3109C>G	p.Gln1037Glu	p.Q1037E	ENST00000274376	NM_002890.2	1037	Caa/Gaa						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46243560	46243560	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0000795-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			857	156	233	0	ENST00000334344.6:c.1912+1G>A		p.X638_splice	ENST00000334344	NM_152641.2	638							NEWRECORD																																																																									
BBC3	27113	MSKCC	GRCh37	19	47725097	47725097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000795-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			942	120	477	0	ENST00000449228.1:c.647C>T	p.Thr216Ile	p.T216I	ENST00000449228	NM_001127240.2	216	aCc/aTc						NEWRECORD																																																																									
MAPK1	5594	MSKCC	GRCh37	22	22153384	22153384	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000795-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1127	99	425	0	ENST00000215832.6:c.526C>A	p.Pro176Thr	p.P176T	ENST00000215832	NM_002745.4	176	Cca/Aca						NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103515036	103515036	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775996769		P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	207	282	2	ENST00000355739.4:c.1537G>A	p.Ala513Thr	p.A513T	ENST00000355739	NM_000123.3	513	Gca/Aca						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			566	65	343	2	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	189	318	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			434	175	302	1	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg						NEWRECORD																																																																									
FH	2271	MSKCC	GRCh37	1	241680489	241680489	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200007371		P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			509	289	432	0	ENST00000366560.3:c.260G>A	p.Arg87His	p.R87H	ENST00000366560	NM_000143.3	87	cGc/cAc						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176638491	176638491	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			386	204	378	0	ENST00000439151.2:c.3091C>T	p.Arg1031Ter	p.R1031*	ENST00000439151	NM_022455.4	1031	Cga/Tga						NEWRECORD																																																																									
FLCN	201163	MSKCC	GRCh37	17	17131402	17131402	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs398124537		P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	223	368	3	ENST00000285071.4:c.50G>A	p.Arg17His	p.R17H	ENST00000285071	NM_144997.5	17	cGc/cAc						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65339154	65339154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			464	244	389	0	ENST00000342505.4:c.382C>T	p.Arg128Cys	p.R128C	ENST00000342505	NM_002227.2	128	Cgt/Tgt						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162724541	162724541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			459	276	420	0	ENST00000367921.3:c.313C>T	p.Arg105Cys	p.R105C	ENST00000367921	NM_006182.2	105	Cgc/Tgc						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142268512	142268512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	163	247	0	ENST00000350721.4:c.2980A>G	p.Thr994Ala	p.T994A	ENST00000350721	NM_001184.3	994	Aca/Gca						NEWRECORD																																																																									
PRDM1	639	MSKCC	GRCh37	6	106553257	106553257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	280	416	0	ENST00000369096.4:c.1222G>A	p.Ala408Thr	p.A408T	ENST00000369096	NM_001198.3	408	Gct/Act						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	152012289	152012289	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			686	304	454	0	ENST00000262189.6:c.524A>C	p.Asp175Ala	p.D175A	ENST00000262189	NM_170606.2	175	gAc/gCc						NEWRECORD																																																																									
MYC	4609	MSKCC	GRCh37	8	128752963	128752963	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	296	377	0	ENST00000377970.2:c.1124A>C	p.Asn375Thr	p.N375T	ENST00000377970	NM_002467.4	375	aAc/aCc						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139417422	139417422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	217	374	0	ENST00000277541.6:c.622G>A	p.Ala208Thr	p.A208T	ENST00000277541	NM_017617.3	208	Gcc/Acc						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43600615	43600615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			456	289	380	0	ENST00000355710.3:c.841G>A	p.Ala281Thr	p.A281T	ENST00000355710	NM_020975.4	281	Gcc/Acc						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70333143	70333143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	231	492	0	ENST00000373644.4:c.1048G>A	p.Glu350Lys	p.E350K	ENST00000373644	NM_030625.2	350	Gaa/Aaa						NEWRECORD																																																																									
FGFR2	2263	MSKCC	GRCh37	10	123353286	123353286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			500	281	481	0	ENST00000358487.5:c.46G>A	p.Ala16Thr	p.A16T	ENST00000358487	NM_000141.4	16	Gca/Aca						NEWRECORD																																																																									
MYOD1	4654	MSKCC	GRCh37	11	17741868	17741868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			79	44	59	0	ENST00000250003.3:c.539C>T	p.Ala180Val	p.A180V	ENST00000250003	NM_002478.4	180	gCg/gTg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108186775	108186775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	260	391	0	ENST00000278616.4:c.6133G>A	p.Ala2045Thr	p.A2045T	ENST00000278616	NM_000051.3	2045	Gcc/Acc						NEWRECORD																																																																									
CDK4	1019	MSKCC	GRCh37	12	58144521	58144521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	258	304	0	ENST00000257904.6:c.550G>A	p.Glu184Lys	p.E184K	ENST00000257904	NM_000075.3	184	Gaa/Aaa						NEWRECORD																																																																									
MDM2	4193	MSKCC	GRCh37	12	69233576	69233576	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	199	222	0	ENST00000462284.1:c.1441T>C	p.Cys481Arg	p.C481R	ENST00000462284	NM_002392.5	481	Tgc/Cgc						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110435459	110435459	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	199	235	0	ENST00000375856.3:c.2942T>A	p.Leu981His	p.L981H	ENST00000375856	NM_003749.2	981	cTc/cAc						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061472	38061472	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	257	281	0	ENST00000250448.2:c.517T>C	p.Tyr173His	p.Y173H	ENST00000250448	NM_004496.3	173	Tac/Cac						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99442813	99442813	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			467	210	391	0	ENST00000268035.6:c.1210A>C	p.Asn404His	p.N404H	ENST00000268035	NM_000875.3	404	Aac/Cac						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68846129	68846129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			514	234	367	0	ENST00000261769.5:c.1100A>G	p.Asp367Gly	p.D367G	ENST00000261769	NM_004360.3	367	gAc/gGc						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41245027	41245027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			527	290	441	0	ENST00000357654.3:c.2521C>T	p.Arg841Trp	p.R841W	ENST00000357654	NM_007294.3	841	Cgg/Tgg						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			566	243	461	1	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5238941	5238941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	130	234	0	ENST00000357368.4:c.1838C>T	p.Thr613Met	p.T613M	ENST00000357368	NM_002850.3	613	aCg/aTg						NEWRECORD																																																																									
TOP1	7150	MSKCC	GRCh37	20	39657709	39657709	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			382	182	234	0	ENST00000361337.2:c.2T>C	p.Met1?	p.M1?	ENST00000361337	NM_003286.2	1	aTg/aCg						NEWRECORD																																																																									
TMPRSS2	7113	MSKCC	GRCh37	21	42840450	42840450	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			358	157	241	1	ENST00000398585.3:c.1298T>C	p.Val433Ala	p.V433A	ENST00000398585	NM_001135099.1	433	gTg/gCg						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66937395	66937395	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			140	325	267	0	ENST00000374690.3:c.2249T>C	p.Met750Thr	p.M750T	ENST00000374690	NM_000044.3	750	aTg/aCg						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			134	350	261	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65306976	65306976	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			605	226	455	0	ENST00000342505.4:c.2601delC	p.Thr868HisfsTer8	p.T868Hfs*8	ENST00000342505	NM_002227.2	867	ccC/cc						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65330611	65330611	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			588	268	450	0	ENST00000342505.4:c.1035delA	p.Lys345AsnfsTer32	p.K345Nfs*32	ENST00000342505	NM_002227.2	345	aaA/aa						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149497245	149497245	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			628	66	393	0	ENST00000261799.4:c.3073delC	p.Leu1025CysfsTer20	p.L1025Cfs*20	ENST00000261799	NM_002609.3	1025	Ctg/tg						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42796883	42796883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	252	473	1	ENST00000575354.2:c.3347del	p.Pro1116GlnfsTer45	p.P1116Qfs*45	ENST00000575354	NM_015125.3	1114	gCc/gc						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36164805	36164805	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			475	266	426	1	ENST00000300305.3:c.1070delC	p.Pro357ArgfsTer237	p.P357Rfs*237	ENST00000300305		357	cCg/cg						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0000126-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	231	179	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0000126-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	239	86	1	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692922	89692922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000126-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	251	156	0	ENST00000371953.3:c.406T>C	p.Cys136Arg	p.C136R	ENST00000371953	NM_000314.4	136	Tgt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000126-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			168	171	124	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151859842	151859842	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000126-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	238	167	0	ENST00000262189.6:c.10820delC	p.Thr3607LysfsTer23	p.T3607Kfs*23	ENST00000262189	NM_170606.2	3607	aCa/aa						NEWRECORD																																																																									
HIST1H3H	8357	MSKCC	GRCh37	6	27777972	27777972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	53	583	0	ENST00000369163.2:c.121C>T	p.Arg41Cys	p.R41C	ENST00000369163	NM_003536.2	41	Cgc/Tgc						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0003882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	38	531	1	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116409781	116409781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	61	334	0	ENST00000397752.3:c.2666C>T	p.Ser889Phe	p.S889F	ENST00000397752	NM_000245.2	889	tCt/tTt						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55372319	55372319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	33	227	0	ENST00000297316.4:c.1009C>T	p.Pro337Ser	p.P337S	ENST00000297316	NM_022454.3	337	Ccg/Tcg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49442528	49442528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	27	337	0	ENST00000301067.7:c.4045A>C	p.Ser1349Arg	p.S1349R	ENST00000301067	NM_003482.3	1349	Agt/Cgt						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061360	38061360	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	98	358	0	ENST00000250448.2:c.629A>G	p.Asn210Ser	p.N210S	ENST00000250448	NM_004496.3	210	aAc/aGc						NEWRECORD																																																																									
MAP2K1	5604	MSKCC	GRCh37	15	66729083	66729083	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	90	397	0	ENST00000307102.5:c.292-1G>A		p.X98_splice	ENST00000307102	NM_002755.3	98							NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39584339	39584339	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	35	202	0	ENST00000262039.4:c.1004A>C	p.Lys335Thr	p.K335T	ENST00000262039	NM_002647.2	335	aAa/aCa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	118	88	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	289	220	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0004431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	274	211	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5212037	5212037	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	128	195	0	ENST00000357368.4:c.4994T>A	p.Ile1665Asn	p.I1665N	ENST00000357368	NM_002850.3	1665	aTc/aAc						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66937442	66937442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	311	282	0	ENST00000374690.3:c.2296G>A	p.Ala766Thr	p.A766T	ENST00000374690	NM_000044.3	766	Gcc/Acc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175243	112175243	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	88	136	0	ENST00000257430.4:c.3952del	p.Asp1318IlefsTer3	p.D1318Ifs*3	ENST00000257430	NM_000038.5	1318	Gat/at						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114710540	114710540	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	171	295	0	ENST00000543371.1:c.28del	p.Asp10MetfsTer3	p.D10Mfs*3	ENST00000543371	NM_001198531.1	9	Ggg/gg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0002702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	268	600	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0002702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			90	292	395	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175024	112175024	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	140	380	0	ENST00000257430.4:c.3733A>T	p.Lys1245Ter	p.K1245*	ENST00000257430	NM_000038.5	1245	Aag/Tag						NEWRECORD																																																																									
MEF2B	100271849	MSKCC	GRCh37	19	19260238	19260238	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	129	363	0	ENST00000162023.5:c.55G>A	p.Val19Met	p.V19M	ENST00000162023		19	Gtg/Atg						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15968808	15968808	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			91	352	343	0	ENST00000268712.3:c.4942del	p.Ala1648GlnfsTer8	p.A1648Qfs*8	ENST00000268712	NM_006311.3	1648	Gca/ca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002651-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	168	333	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187540140	187540140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002651-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			536	183	410	2	ENST00000441802.2:c.7600G>A	p.Asp2534Asn	p.D2534N	ENST00000441802	NM_005245.3	2534	Gac/Aac						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187549458	187549458	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002651-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	132	337	0	ENST00000441802.2:c.4660G>C	p.Asp1554His	p.D1554H	ENST00000441802	NM_005245.3	1554	Gac/Cac						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139417398	139417398	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002651-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			278	111	261	0	ENST00000277541.6:c.646G>C	p.Glu216Gln	p.E216Q	ENST00000277541	NM_017617.3	216	Gag/Cag						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118342821	118342821	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002651-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			431	75	296	0	ENST00000534358.1:c.947C>G	p.Ser316Trp	p.S316W	ENST00000534358	NM_005933.3	316	tCg/tGg						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41243482	41243482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002651-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	167	409	0	ENST00000357654.3:c.4066C>G	p.Gln1356Glu	p.Q1356E	ENST00000357654	NM_007294.3	1356	Caa/Gaa						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17942065	17942065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002651-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			484	59	329	0	ENST00000458235.1:c.2950C>T	p.Arg984Cys	p.R984C	ENST00000458235	NM_000215.3	984	Cgc/Tgc						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66217288	66217297	+	frameshift_variant	Frame_Shift_Del	DEL	TGAATCACAG	TGAATCACAG	-			P-0002651-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	70	204	0	ENST00000273854.3:c.2318_2327del	p.Thr773SerfsTer6	p.T773Sfs*6	ENST00000273854	NM_004439.5	773	aCTGTGATTCAg/ag						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47125848	47125848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	44	407	0	ENST00000409792.3:c.5422C>T	p.Pro1808Ser	p.P1808S	ENST00000409792	NM_014159.6	1808	Ccc/Tcc						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42041121	42041141	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCAGGTATAAAGTTCTTTTT	CCCAGGTATAAAGTTCTTTTT	-			P-0003460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	136	980	0	ENST00000219905.7:c.5499_5503+16del		p.X1833_splice	ENST00000219905	NM_001164273.1	1833							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	185	236	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25467167	25467167	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			472	124	250	0	ENST00000264709.3:c.1708G>T	p.Gly570Trp	p.G570W	ENST00000264709	NM_175629.2	570	Ggg/Tgg						NEWRECORD																																																																									
CASP8	841	MSKCC	GRCh37	2	202149863	202149863	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			385	128	217	0	ENST00000358485.4:c.1304A>T	p.Glu435Val	p.E435V	ENST00000358485	NM_001080125.1	435	gAg/gTg						NEWRECORD																																																																									
FGFR3	2261	MSKCC	GRCh37	4	1803464	1803464	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			430	80	214	0	ENST00000260795.2:c.733G>C	p.Val245Leu	p.V245L	ENST00000260795		245	Gtg/Ctg						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66201843	66201843	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	87	144	0	ENST00000273854.3:c.2659G>C	p.Val887Leu	p.V887L	ENST00000273854	NM_004439.5	887	Gtg/Ctg						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67589642	67589642	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			158	59	97	0	ENST00000274335.5:c.1405G>T	p.Glu469Ter	p.E469*	ENST00000274335		469	Gaa/Taa						NEWRECORD																																																																									
DAXX	1616	MSKCC	GRCh37	6	33287818	33287818	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			660	192	308	0	ENST00000374542.5:c.1435G>C	p.Glu479Gln	p.E479Q	ENST00000374542	NM_001141970.1	479	Gag/Cag						NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	161990392	161990392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			253	102	229	0	ENST00000366898.1:c.928G>T	p.Glu310Ter	p.E310*	ENST00000366898	NM_004562.2	310	Gag/Tag						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56495077	56495077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			553	150	250	0	ENST00000267101.3:c.3434C>T	p.Pro1145Leu	p.P1145L	ENST00000267101	NM_001982.3	1145	cCa/cTa						NEWRECORD																																																																									
PTPN11	5781	MSKCC	GRCh37	12	112888210	112888210	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			324	126	252	0	ENST00000351677.2:c.226G>C	p.Glu76Gln	p.E76Q	ENST00000351677	NM_002834.3	76	Gag/Cag						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115118863	115118863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			416	124	229	0	ENST00000257566.3:c.478G>T	p.Asp160Tyr	p.D160Y	ENST00000257566	NM_016569.3	160	Gac/Tac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			217	85	145	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40735503	40735503	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	128	221	0	ENST00000373198.4:c.3370G>T	p.Glu1124Ter	p.E1124*	ENST00000373198	NM_133170.3	1124	Gag/Tag						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76778738	76778738	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			181	108	404	0	ENST00000373344.5:c.6841G>T	p.Glu2281Ter	p.E2281*	ENST00000373344	NM_000489.3	2281	Gag/Tag						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106048	27106056	+	inframe_deletion	In_Frame_Del	DEL	GGTACACCA	GGTACACCA	-			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	49	113	0	ENST00000324856.7:c.5661_5669del	p.Pro1889_Thr1891del	p.P1889_T1891del	ENST00000324856	NM_006015.4	1887	GGTACACCA/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0002123-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			146	83	373	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs879499034		P-0002439-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			252	37	222	0	ENST00000250448.2:c.798C>A	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttA						NEWRECORD																																																																									
TMPRSS2	7113	MSKCC	GRCh37	21	42840410	42840411	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0002439-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	51	362	0	ENST00000398585.3:c.1337_1338del	p.Arg446MetfsTer8	p.R446Mfs*8	ENST00000398585	NM_001135099.1	446	aGA/a						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0003439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	36	519	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16257336	16257336	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	71	365	0	ENST00000375759.3:c.4601C>G	p.Ser1534Ter	p.S1534*	ENST00000375759	NM_015001.2	1534	tCa/tGa						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178096027	178096027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	57	289	0	ENST00000397062.3:c.1304G>T	p.Gly435Val	p.G435V	ENST00000397062	NM_006164.4	435	gGt/gTt						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134670550	134670550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	92	426	0	ENST00000398015.3:c.461G>T	p.Arg154Met	p.R154M	ENST00000398015	NM_004441.4	154	aGg/aTg						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs149680468		P-0003439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	55	441	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135796754	135796754	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	56	397	0	ENST00000298552.3:c.733C>T	p.Arg245Ter	p.R245*	ENST00000298552	NM_001162426.1	245	Cga/Tga						NEWRECORD																																																																									
RPS6KB2	6199	MSKCC	GRCh37	11	67200479	67200479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	30	332	4	ENST00000312629.5:c.673G>T	p.Val225Phe	p.V225F	ENST00000312629	NM_003952.2	225	Gtc/Ttc						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971061	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGCACGTCCAGCCGCGCCCCGGCC	CGCGCACGTCCAGCCGCGCCCCGGCC	-			P-0003439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	49	175	0	ENST00000304494.5:c.297_322del	p.Ala100CysfsTer11	p.A100Cfs*11	ENST00000304494	NM_000077.4	99	cgGGCCGGGGCGCGGCTGGACGTGCGCGat/cgat						NEWRECORD																																																																									
MST1R	4486	MSKCC	GRCh37	3	49927406	49927406	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	42	641	0	ENST00000296474.3:c.3898del	p.Leu1300TrpfsTer20	p.L1300Wfs*20	ENST00000296474	NM_002447.2	1300	Ctg/tg						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	29008053	29008054	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0003439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	33	394	0	ENST00000282397.4:c.715_716delinsAG	p.Pro239Arg	p.P239R	ENST00000282397	NM_002019.4	239	CCa/AGa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187519226	187519226	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200611830		P-0002147-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			439	202	383	0	ENST00000441802.2:c.12157G>A	p.Val4053Ile	p.V4053I	ENST00000441802	NM_005245.3	4053	Gtc/Atc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0002147-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			69	273	258	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86685334	86685334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002147-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			341	243	164	0	ENST00000274376.6:c.3050G>T	p.Gly1017Val	p.G1017V	ENST00000274376	NM_002890.2	1017	gGt/gTt						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68844245	68844245	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0002147-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			71	134	266	0	ENST00000261769.5:c.832+1G>A		p.X278_splice	ENST00000261769	NM_004360.3	278							NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604662	48604662	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001633-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			480	29	486	0	ENST00000342988.3:c.1484T>C	p.Leu495Pro	p.L495P	ENST00000342988	NM_005359.5	495	cTt/cCt						NEWRECORD																																																																									
PMS2	5395	MSKCC	GRCh37	7	6043597	6043604	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTTACTT	ACTTACTT	-			P-0001633-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	13	187	0	ENST00000265849.7:c.249_250+6del		p.X83_splice	ENST00000265849	NM_000535.5	83							NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220592	1220592	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001633-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			439	279	522	0	ENST00000326873.7:c.611del	p.Phe204SerfsTer83	p.F204Sfs*83	ENST00000326873	NM_000455.4	204	Ttc/tc						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25457219	25457226	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGCAGT	CCAGCAGT	GTG			P-0001633-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			791	145	605	0	ENST00000264709.3:c.2661_2668delinsCAC	p.Arg887SerfsTer32	p.R887Sfs*32	ENST00000264709	NM_175629.2	887	agACTGCTGGgc/agCACgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0001182-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			106	92	428	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
HIST1H3B	8358	MSKCC	GRCh37	6	26031895	26031895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002707-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			308	62	157	1	ENST00000244661.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000244661	NM_003537.3	132	Cgc/Tgc						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117638344	117638344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002707-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			540	93	445	0	ENST00000368508.3:c.6097G>A	p.Asp2033Asn	p.D2033N	ENST00000368508	NM_002944.2	2033	Gac/Aac						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27087947	27087947	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			442	96	229	0	ENST00000324856.7:c.2234G>C	p.Ser745Thr	p.S745T	ENST00000324856	NM_006015.4	745	aGc/aCc						NEWRECORD																																																																									
NEGR1	257194	MSKCC	GRCh37	1	72058537	72058537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			676	155	407	0	ENST00000357731.5:c.903C>A	p.Asn301Lys	p.N301K	ENST00000357731	NM_173808.2	301	aaC/aaA						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99163154	99163154	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			364	204	218	0	ENST00000074304.5:c.1160A>G	p.Lys387Arg	p.K387R	ENST00000074304	NM_001134224.1	387	aAa/aGa						NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35874551	35874551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			486	213	310	0	ENST00000303115.3:c.707G>T	p.Gly236Val	p.G236V	ENST00000303115	NM_002185.3	236	gGg/gTg						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67569301	67569301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			418	190	226	0	ENST00000274335.5:c.418G>A	p.Glu140Lys	p.E140K	ENST00000274335		140	Gaa/Aaa						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108218052	108218052	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			207	314	234	0	ENST00000278616.4:c.8631G>C	p.Leu2877Phe	p.L2877F	ENST00000278616	NM_000051.3	2877	ttG/ttC						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49434552	49434552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			244	116	133	0	ENST00000301067.7:c.7001G>T	p.Arg2334Leu	p.R2334L	ENST00000301067	NM_003482.3	2334	cGg/cTg						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88727490	88727490	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			285	127	227	0	ENST00000360948.2:c.289G>C	p.Val97Leu	p.V97L	ENST00000360948	NM_001012338.2	97	Gtg/Ctg						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89350927	89350927	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			599	288	434	0	ENST00000301030.4:c.2023G>C	p.Glu675Gln	p.E675Q	ENST00000301030	NM_001256183.1	675	Gag/Cag						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207201	1207201	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			121	139	136	0	ENST00000326873.7:c.289A>T	p.Lys97Ter	p.K97*	ENST00000326873	NM_000455.4	97	Aag/Tag						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602799	10602799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			174	219	245	0	ENST00000171111.5:c.779G>T	p.Arg260Leu	p.R260L	ENST00000171111	NM_203500.1	260	cGa/cTa						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40790139	40790139	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			234	103	149	0	ENST00000373198.4:c.2592C>G	p.Ile864Met	p.I864M	ENST00000373198	NM_133170.3	864	atC/atG						NEWRECORD																																																																									
RARA	5914	MSKCC	GRCh37	17	38508182	38508184	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			330	86	266	1	ENST00000254066.5:c.499_501delAAG	p.Lys167del	p.K167del	ENST00000254066	NM_000964.3	164	AAG/-						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162741925	162741925	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	91	268	0	ENST00000367921.3:c.1616C>A	p.Ser539Ter	p.S539*	ENST00000367921	NM_006182.2	539	tCa/tAa						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52439268	52439268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	41	147	0	ENST00000460680.1:c.974C>T	p.Ser325Phe	p.S325F	ENST00000460680	NM_004656.3	325	tCc/tTc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175222	112175222	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	39	180	0	ENST00000257430.4:c.3931A>T	p.Ile1311Phe	p.I1311F	ENST00000257430	NM_000038.5	1311	Att/Ttt						NEWRECORD																																																																									
KLF4	9314	MSKCC	GRCh37	9	110250016	110250016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	37	148	0	ENST00000374672.4:c.659C>T	p.Pro220Leu	p.P220L	ENST00000374672	NM_004235.4	220	cCg/cTg						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18719941	18719941	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	103	321	0	ENST00000266497.5:c.3838C>G	p.Leu1280Val	p.L1280V	ENST00000266497		1280	Cta/Gta						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49420885	49420885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	76	201	0	ENST00000301067.7:c.14864C>A	p.Ser4955Tyr	p.S4955Y	ENST00000301067	NM_003482.3	4955	tCc/tAc						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3778345	3778345	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	19	114	0	ENST00000262367.5:c.6703C>T	p.Gln2235Ter	p.Q2235*	ENST00000262367	NM_004380.2	2235	Caa/Taa						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207166	1207166	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0003937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	99	242	0	ENST00000326873.7:c.254T>A	p.Leu85Ter	p.L85*	ENST00000326873	NM_000455.4	85	tTg/tAg						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602496	10602496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	101	266	0	ENST00000171111.5:c.1082C>T	p.Pro361Leu	p.P361L	ENST00000171111	NM_203500.1	361	cCg/cTg						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11138500	11138500	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	108	356	0	ENST00000344626.4:c.3256G>T	p.Asp1086Tyr	p.D1086Y	ENST00000344626	NM_003072.3	1086	Gat/Tat						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66766499	66766499	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	73	259	0	ENST00000374690.3:c.1511A>G	p.Tyr504Cys	p.Y504C	ENST00000374690	NM_000044.3	504	tAc/tGc						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108115739	108115774	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAACCCAAGAAAAAGGTATAAAGGAAATGTTTACTG	AAACCCAAGAAAAAGGTATAAAGGAAATGTTTACTG	-			P-0003937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	38	146	0	ENST00000278616.4:c.887_901+21del		p.X296_splice	ENST00000278616	NM_000051.3	296							NEWRECORD																																																																									
TRAF2	7186	MSKCC	GRCh37	9	139814954	139814954	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	76	566	0	ENST00000247668.2:c.949del	p.Leu317Ter	p.L317*	ENST00000247668	NM_021138.3	316	gCc/gc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001462-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	284	287	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37657509	37657509	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001462-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	336	366	0	ENST00000447079.4:c.2426T>G	p.Phe809Cys	p.F809C	ENST00000447079	NM_015083.1	809	tTt/tGt						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37657542	37657542	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001462-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			207	380	411	0	ENST00000447079.4:c.2459T>C	p.Leu820Ser	p.L820S	ENST00000447079	NM_015083.1	820	tTa/tCa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	531	519	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49425853	49425853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	145	468	0	ENST00000301067.7:c.12635G>A	p.Arg4212Gln	p.R4212Q	ENST00000301067	NM_003482.3	4212	cGg/cAg						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42796466	42796466	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	217	413	1	ENST00000575354.2:c.3023A>G	p.Gln1008Arg	p.Q1008R	ENST00000575354	NM_015125.3	1008	cAg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577533	7577547	+	inframe_deletion	In_Frame_Del	DEL	GCCTCCGGTTCATGC	GCCTCCGGTTCATGC	-			P-0004386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	131	413	0	ENST00000269305.4:c.734_748del	p.Gly245_Pro250delinsAla	p.G245_P250delinsA	ENST00000269305	NM_001126112.2	245	gGCATGAACCGGAGGCcc/gcc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912660		P-0001127-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			413	279	353	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89521708	89521708	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0001127-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			329	74	285	0	ENST00000336596.2:c.2785A>T	p.Lys929Ter	p.K929*	ENST00000336596	NM_005233.5	929	Aag/Tag						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600377	10600377	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001127-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			455	241	460	0	ENST00000171111.5:c.1478A>C	p.Glu493Ala	p.E493A	ENST00000171111	NM_203500.1	493	gAg/gCg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	69	259	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0004361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	29	220	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc						NEWRECORD																																																																									
PMS1	5378	MSKCC	GRCh37	2	190670377	190670377	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0004361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	56	313	0	ENST00000441310.2:c.316-1G>T		p.X106_splice	ENST00000441310	NM_000534.4	106							NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42003281	42003281	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1370	119	589	0	ENST00000219905.7:c.2818A>T	p.Lys940Ter	p.K940*	ENST00000219905	NM_001164273.1	940	Aag/Tag						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88679129	88679129	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0004361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	67	263	0	ENST00000360948.2:c.907+1G>T		p.X303_splice	ENST00000360948	NM_001012338.2	303							NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88727529	88727529	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	47	145	0	ENST00000360948.2:c.250C>T	p.His84Tyr	p.H84Y	ENST00000360948	NM_001012338.2	84	Cac/Tac						NEWRECORD																																																																									
RAD51C	5889	MSKCC	GRCh37	17	56774132	56774132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	49	282	0	ENST00000337432.4:c.483G>T	p.Glu161Asp	p.E161D	ENST00000337432	NM_058216.2	161	gaG/gaT						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16256949	16256949	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	32	371	0	ENST00000375759.3:c.4214C>G	p.Ser1405Cys	p.S1405C	ENST00000375759	NM_015001.2	1405	tCt/tGt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			241	400	58	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65348993	65348993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			351	122	161	0	ENST00000342505.4:c.172G>A	p.Glu58Lys	p.E58K	ENST00000342505	NM_002227.2	58	Gag/Aag						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66230874	66230874	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			736	283	233	0	ENST00000273854.3:c.2097A>C	p.Lys699Asn	p.K699N	ENST00000273854	NM_004439.5	699	aaA/aaC						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187540157	187540157	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			758	322	300	0	ENST00000441802.2:c.7583C>G	p.Thr2528Ser	p.T2528S	ENST00000441802	NM_005245.3	2528	aCt/aGt						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180039516	180039516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	178	389	0	ENST00000261937.6:c.3527G>T	p.Arg1176Met	p.R1176M	ENST00000261937	NM_182925.4	1176	aGg/aTg						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106513012	106513012	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	175	116	0	ENST00000359195.3:c.2026G>T	p.Ala676Ser	p.A676S	ENST00000359195	NM_002649.2	676	Gcc/Tcc						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49432042	49432042	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			579	257	549	0	ENST00000301067.7:c.9097A>T	p.Thr3033Ser	p.T3033S	ENST00000301067	NM_003482.3	3033	Acc/Tcc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579582	7579583	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	G			P-0000235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			162	95	221	0	ENST00000269305.4:c.104_105delTGinsC	p.Leu35SerfsTer9	p.L35Sfs*9	ENST00000269305	NM_001126112.2	35	tTG/tC						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0003752-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			95	16	518	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0003752-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			51	14	375	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
MITF	4286	MSKCC	GRCh37	3	69928376	69928376	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003752-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			160	11	452	0	ENST00000352241.4:c.196G>C	p.Glu66Gln	p.E66Q	ENST00000352241	NM_198159.2	66	Gag/Cag						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55971077	55971077	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003752-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			153	13	619	0	ENST00000263923.4:c.1720G>C	p.Asp574His	p.D574H	ENST00000263923	NM_002253.2	574	Gac/Cac						NEWRECORD																																																																									
CDK4	1019	MSKCC	GRCh37	12	58142367	58142367	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003752-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			629	96	467	0	ENST00000257904.6:c.853T>C	p.Ser285Pro	p.S285P	ENST00000257904	NM_000075.3	285	Tct/Cct						NEWRECORD																																																																									
STAT3	6774	MSKCC	GRCh37	17	40475063	40475063	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003752-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			247	31	746	0	ENST00000264657.5:c.1847A>G	p.Glu616Gly	p.E616G	ENST00000264657	NM_139276.2	616	gAa/gGa						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42794603	42794603	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003752-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			98	19	546	0	ENST00000575354.2:c.1683G>C	p.Glu561Asp	p.E561D	ENST00000575354	NM_015125.3	561	gaG/gaC						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32417944	32417944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	199	301	2	ENST00000332351.3:c.1108C>T	p.Arg370Cys	p.R370C	ENST00000332351	NM_024426.4	370	Cgt/Tgt						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16075154	16075154	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	120	317	0	ENST00000268712.3:c.398T>A	p.Leu133Gln	p.L133Q	ENST00000268712	NM_006311.3	133	cTg/cAg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720843	89720843	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			71	33	193	0	ENST00000371953.3:c.996del	p.Ala333ProfsTer11	p.A333Pfs*11	ENST00000371953	NM_000314.4	332	Aaa/aa						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89711973	89711973	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	13	265	0	ENST00000371953.3:c.591del	p.Met198Ter	p.M198*	ENST00000371953	NM_000314.4	197	aaG/aa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0001247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			59	104	258	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89521633	89521633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	332	380	0	ENST00000336596.2:c.2710G>T	p.Asp904Tyr	p.D904Y	ENST00000336596	NM_005233.5	904	Gac/Tac						NEWRECORD																																																																									
SOX2	6657	MSKCC	GRCh37	3	181430851	181430851	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			872	140	625	0	ENST00000325404.1:c.703A>T	p.Met235Leu	p.M235L	ENST00000325404	NM_003106.3	235	Atg/Ttg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112176089	112176089	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	241	349	0	ENST00000257430.4:c.4798A>G	p.Lys1600Glu	p.K1600E	ENST00000257430	NM_000038.5	1600	Aaa/Gaa						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156851286	156851286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000391-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	44	662	0	ENST00000524377.1:c.2243G>A	p.Arg748Gln	p.R748Q	ENST00000524377	NM_002529.3	748	cGg/cAg						NEWRECORD																																																																									
CCND1	595	MSKCC	GRCh37	11	69465997	69465997	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1158	70	460	0	ENST00000227507.2:c.835G>T	p.Glu279Ter	p.E279*	ENST00000227507	NM_053056.2	279	Gag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0004495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1082	77	604	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31022628	31022628	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	69	612	0	ENST00000375687.4:c.2113G>T	p.Glu705Ter	p.E705*	ENST00000375687	NM_015338.5	705	Gag/Tag						NEWRECORD																																																																									
CCND3	896	MSKCC	GRCh37	6	41909336	41909336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	36	282	0	ENST00000372991.4:c.52G>A	p.Asp18Asn	p.D18N	ENST00000372991	NM_001760.3	18	Gac/Aac						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108165759	108165759	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1100	59	532	0	ENST00000278616.4:c.4882A>T	p.Met1628Leu	p.M1628L	ENST00000278616	NM_000051.3	1628	Atg/Ttg						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28608224	28608224	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1186	70	740	0	ENST00000241453.7:c.1832A>T	p.Glu611Val	p.E611V	ENST00000241453	NM_004119.2	611	gAg/gTg						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32936713	32936713	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	58	513	0	ENST00000380152.3:c.7859T>A	p.Val2620Asp	p.V2620D	ENST00000380152		2620	gTt/gAt						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63530180	63530180	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	60	547	0	ENST00000307078.5:c.2255A>C	p.Lys752Thr	p.K752T	ENST00000307078	NM_004655.3	752	aAa/aCa						NEWRECORD																																																																									
ERCC2	2068	MSKCC	GRCh37	19	45868188	45868188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	58	489	0	ENST00000391945.4:c.502G>A	p.Val168Met	p.V168M	ENST00000391945	NM_000400.3	168	Gtg/Atg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	71	151	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0003570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			39	184	420	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120461166	120461166	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200693165		P-0003570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	60	225	2	ENST00000256646.2:c.5792G>A	p.Arg1931His	p.R1931H	ENST00000256646	NM_024408.3	1931	cGc/cAc						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66535450	66535450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	47	64	2	ENST00000273854.3:c.11C>T	p.Ser4Leu	p.S4L	ENST00000273854	NM_004439.5	4	tCg/tTg						NEWRECORD																																																																									
HIST1H3B	8358	MSKCC	GRCh37	6	26032045	26032045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	74	634	0	ENST00000244661.2:c.244G>A	p.Asp82Asn	p.D82N	ENST00000244661	NM_003537.3	82	Gat/Aat						NEWRECORD																																																																									
CDKN2B	1030	MSKCC	GRCh37	9	22008910	22008910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	156	306	0	ENST00000276925.6:c.43G>A	p.Asp15Asn	p.D15N	ENST00000276925	NM_004936.3	15	Gat/Aat						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46230772	46230772	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0003570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	15	235	0	ENST00000334344.6:c.1021G>C	p.Glu341Gln	p.E341Q	ENST00000334344	NM_152641.2	341	Gag/Cag						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28913416	28913416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	34	324	1	ENST00000282397.4:c.2377G>A	p.Asp793Asn	p.D793N	ENST00000282397	NM_002019.4	793	Gac/Aac						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9923448	9923448	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	77	379	0	ENST00000330684.3:c.1839C>G	p.Phe613Leu	p.F613L	ENST00000330684	NM_001134407.1	613	ttC/ttG						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68845758	68845758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	51	269	0	ENST00000261769.5:c.1004G>A	p.Arg335Gln	p.R335Q	ENST00000261769	NM_004360.3	335	cGa/cAa						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29548880	29548880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	72	235	0	ENST00000358273.4:c.1654C>T	p.Leu552Phe	p.L552F	ENST00000358273	NM_001042492.2	552	Ctt/Ttt						NEWRECORD																																																																									
DNAJB1	3337	MSKCC	GRCh37	19	14627521	14627521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	47	425	0	ENST00000254322.2:c.549G>T	p.Met183Ile	p.M183I	ENST00000254322	NM_006145.1	183	atG/atT						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0000929-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			270	6680	448	1	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579330	7579330	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000929-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			69	255	426	0	ENST00000269305.4:c.357del	p.Lys120SerfsTer3	p.K120Sfs*3	ENST00000269305	NM_001126112.2	119	gcC/gc						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48878187	48878187	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0000929-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			22	116	101	0	ENST00000267163.4:c.137+2T>A		p.X46_splice	ENST00000267163	NM_000321.2	46							NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0004336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	17	395	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49432513	49432513	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	66	348	0	ENST00000301067.7:c.8626C>T	p.Gln2876Ter	p.Q2876*	ENST00000301067	NM_003482.3	2876	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0001630-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	19	1246	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0001630-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	39	1248	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0002580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			850	143	596	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0002580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			570	222	536	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120612013	120612014	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0002197-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	17	35	2	ENST00000256646.2:c.7_8delinsTT	p.Ala3Phe	p.A3F	ENST00000256646	NM_024408.3	3	GCc/TTc						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143324171	143324171	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002197-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	234	349	0	ENST00000262992.4:c.292T>G	p.Phe98Val	p.F98V	ENST00000262992	NM_001101669.1	98	Ttc/Gtc						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64572033	64572033	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002197-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			169	1135	331	0	ENST00000337652.1:c.1621C>T	p.Gln541Ter	p.Q541*	ENST00000337652	NM_130803.2	541	Cag/Tag						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604778	48604778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767383		P-0002197-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			70	250	382	0	ENST00000342988.3:c.1600C>T	p.Gln534Ter	p.Q534*	ENST00000342988	NM_005359.5	534	Cag/Tag						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0004140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	222	383	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47164966	47164966	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	230	343	0	ENST00000409792.3:c.1160C>G	p.Thr387Ser	p.T387S	ENST00000409792	NM_014159.6	387	aCt/aGt						NEWRECORD																																																																									
EIF4A2	1974	MSKCC	GRCh37	3	186503718	186503718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	158	662	0	ENST00000323963.5:c.395G>A	p.Cys132Tyr	p.C132Y	ENST00000323963		132	tGt/tAt						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66535309	66535309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	87	356	1	ENST00000273854.3:c.152G>A	p.Arg51Gln	p.R51Q	ENST00000273854	NM_004439.5	51	cGg/cAg						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63829535	63829535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	141	254	0	ENST00000279873.7:c.1178G>A	p.Cys393Tyr	p.C393Y	ENST00000279873	NM_032199.2	393	tGt/tAt						NEWRECORD																																																																									
PTPN11	5781	MSKCC	GRCh37	12	112915778	112915778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	104	369	0	ENST00000351677.2:c.1051C>T	p.Arg351Ter	p.R351*	ENST00000351677	NM_002834.3	351	Cga/Tga						NEWRECORD																																																																									
MAPK3	5595	MSKCC	GRCh37	16	30128482	30128482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	354	650	0	ENST00000263025.4:c.900C>G	p.Asp300Glu	p.D300E	ENST00000263025	NM_002746.2	300	gaC/gaG						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39644786	39644786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	259	365	0	ENST00000262039.4:c.2515G>A	p.Val839Met	p.V839M	ENST00000262039	NM_002647.2	839	Gtg/Atg						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2210408	2210408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	78	256	0	ENST00000398665.3:c.1015G>A	p.Glu339Lys	p.E339K	ENST00000398665	NM_032482.2	339	Gag/Aag						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9560898	9560898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	263	408	1	ENST00000353224.5:c.884C>T	p.Pro295Leu	p.P295L	ENST00000353224	NM_177990.2	295	cCg/cTg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48573651	48573677	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATGGGAGGCTTCAGGTTAGTCTTATA	GATGGGAGGCTTCAGGTTAGTCTTATA	T			P-0004140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	144	190	0	ENST00000342988.3:c.235_249+12delinsT		p.X79_splice	ENST00000342988	NM_005359.5	79							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0002869-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	195	401	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46244485	46244485	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs147193304		P-0002869-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			648	44	336	0	ENST00000334344.6:c.2579A>G	p.Asn860Ser	p.N860S	ENST00000334344	NM_152641.2	860	aAt/aGt						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41101065	41101065	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002869-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	123	262	0	ENST00000373198.4:c.1291A>G	p.Asn431Asp	p.N431D	ENST00000373198	NM_133170.3	431	Aac/Gac						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70360591	70360591	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002869-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			181	124	124	0	ENST00000374080.3:c.6151C>T	p.Gln2051Ter	p.Q2051*	ENST00000374080		2051	Cag/Tag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	CACCAT			P-0002869-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			500	283	277	0	ENST00000275493.2:c.2237_2251delinsCACCAT	p.Glu746_Thr751delinsAlaProSer	p.E746_T751delinsAPS	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gCACCATca						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	642	296	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35860993	35860993	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	191	254	0	ENST00000303115.3:c.122C>G	p.Ser41Ter	p.S41*	ENST00000303115	NM_002185.3	41	tCa/tGa						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	394	231	1	ENST00000206249.3:c.1607T>G	p.Leu536Arg	p.L536R	ENST00000206249	NM_000125.3	536	cTc/cGc						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15302902	15302902	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	184	196	0	ENST00000263388.2:c.548G>C	p.Cys183Ser	p.C183S	ENST00000263388	NM_000435.2	183	tGc/tCc						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81359084	81359084	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	30	272	0	ENST00000222390.5:c.877A>G	p.Met293Val	p.M293V	ENST00000222390	NM_000601.4	293	Atg/Gtg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108114740	108114740	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0004317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	211	287	0	ENST00000278616.4:c.557T>A	p.Leu186Ter	p.L186*	ENST00000278616	NM_000051.3	186	tTa/tAa						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0001241-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			73	246	186	0	ENST00000397752.3:c.3028G>T	p.Asp1010Tyr	p.D1010Y	ENST00000397752	NM_000245.2	1010	Gat/Tat						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27105817	27105817	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001241-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	35	226	0	ENST00000324856.7:c.5428G>C	p.Asp1810His	p.D1810H	ENST00000324856	NM_006015.4	1810	Gac/Cac						NEWRECORD																																																																									
TOP1	7150	MSKCC	GRCh37	20	39744041	39744041	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001241-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	38	251	0	ENST00000361337.2:c.1669A>C	p.Asn557His	p.N557H	ENST00000361337	NM_003286.2	557	Aac/Cac						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39916531	39916531	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001241-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			197	73	499	0	ENST00000378444.4:c.4472A>G	p.Asn1491Ser	p.N1491S	ENST00000378444	NM_001123385.1	1491	aAt/aGt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0002278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	129	427	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88679161	88679161	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			183	21	502	0	ENST00000360948.2:c.876G>T	p.Met292Ile	p.M292I	ENST00000360948	NM_001012338.2	292	atG/atT						NEWRECORD																																																																									
AXL	558	MSKCC	GRCh37	19	41736922	41736922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			219	31	506	0	ENST00000301178.4:c.637G>A	p.Val213Ile	p.V213I	ENST00000301178	NM_021913.4	213	Gtc/Atc						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41556676	41556676	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	37	343	0	ENST00000263253.7:c.3621G>C	p.Glu1207Asp	p.E1207D	ENST00000263253	NM_001429.3	1207	gaG/gaC						NEWRECORD																																																																									
PRDM1	639	MSKCC	GRCh37	6	106553249	106553249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	116	490	0	ENST00000369096.4:c.1214C>T	p.Ser405Leu	p.S405L	ENST00000369096	NM_001198.3	405	tCg/tTg						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2134691	2134691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	60	261	0	ENST00000219476.3:c.4468G>A	p.Glu1490Lys	p.E1490K	ENST00000219476	NM_000548.3	1490	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578470	7578473	+	frameshift_variant	Frame_Shift_Del	DEL	CGGG	CGGG	-			P-0004613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	391	431	0	ENST00000269305.4:c.457_460del	p.Pro153AlafsTer16	p.P153Afs*16	ENST00000269305	NM_001126112.2	153	CCCGgc/gc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242481	+	protein_altering_variant	In_Frame_Del	DEL	GGAATTAAGAGAAGCAA	GGAATTAAGAGAAGCAA	AATTC			P-0004613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	554	384	1	ENST00000275493.2:c.2235_2251delinsAATTC	p.Glu746_Thr751delinsIlePro	p.E746_T751delinsIP	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCAAca/aaAATTCca						NEWRECORD																																																																									
TNFAIP3	7128	MSKCC	GRCh37	6	138196093	138196093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			725	65	456	0	ENST00000237289.4:c.407G>T	p.Arg136Leu	p.R136L	ENST00000237289	NM_001270507.1	136	cGc/cTc						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061797	38061797	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			513	60	529	1	ENST00000250448.2:c.192C>A	p.Phe64Leu	p.F64L	ENST00000250448	NM_004496.3	64	ttC/ttA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0002894-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			257	332	372	5	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	241	240	0	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27099341	27099341	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			507	118	296	0	ENST00000324856.7:c.3578A>C	p.Asp1193Ala	p.D1193A	ENST00000324856	NM_006015.4	1193	gAt/gCt						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29416462	29416462	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			554	336	359	0	ENST00000389048.3:c.4491C>G	p.Asn1497Lys	p.N1497K	ENST00000389048	NM_004304.4	1497	aaC/aaG						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32456489	32456489	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			44	39	58	0	ENST00000332351.3:c.403C>G	p.Pro135Ala	p.P135A	ENST00000332351	NM_024426.4	135	Ccg/Gcg						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47028754	47028754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			588	148	346	0	ENST00000329236.7:c.58G>A	p.Asp20Asn	p.D20N	ENST00000329236	NM_001204466.1	20	Gac/Aac						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41243882	41243894	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTTCATCCTCA	CTCTTCATCCTCA	-			P-0002237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			268	239	256	0	ENST00000357654.3:c.3654_3666del	p.Glu1219PhefsTer12	p.E1219Ffs*12	ENST00000357654	NM_007294.3	1218	agTGAGGATGAAGAG/ag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			228	184	422	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0001054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			127	107	140	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120458011	120458011	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			177	26	246	0	ENST00000256646.2:c.7334C>G	p.Pro2445Arg	p.P2445R	ENST00000256646	NM_024408.3	2445	cCt/cGt						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29606696	29606696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			153	34	333	1	ENST00000389048.3:c.1184G>A	p.Arg395His	p.R395H	ENST00000389048	NM_004304.4	395	cGt/cAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			50	161	238	0	ENST00000269305.4:c.725G>C	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	tGc/tCc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591891	48591891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28936394		P-0001054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			102	135	407	0	ENST00000342988.3:c.1054G>A	p.Gly352Arg	p.G352R	ENST00000342988	NM_005359.5	352	Gga/Aga						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10260328	10260328	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148987580		P-0001054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			86	85	222	0	ENST00000340748.4:c.2339C>T	p.Thr780Met	p.T780M	ENST00000340748		780	aCg/aTg						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76920227	76920227	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			197	48	690	0	ENST00000373344.5:c.3850C>A	p.Leu1284Ile	p.L1284I	ENST00000373344	NM_000489.3	1284	Ctt/Att						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215610525	215610529	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCC	CAGCC	-			P-0001054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	34	430	0	ENST00000260947.4:c.1727_1731del	p.Gly576ValfsTer10	p.G576Vfs*10	ENST00000260947	NM_000465.2	576	gGGCTG/g						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175765	112175774	+	frameshift_variant	Frame_Shift_Del	DEL	GCCACGGAAA	GCCACGGAAA	-			P-0001054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			70	56	244	0	ENST00000257430.4:c.4475_4484del	p.Ala1492ValfsTer12	p.A1492Vfs*12	ENST00000257430	NM_000038.5	1492	GCCACGGAAAgt/gt						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140501242	140501242	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			486	64	287	0	ENST00000288602.6:c.830del	p.Pro277HisfsTer2	p.P277Hfs*2	ENST00000288602	NM_004333.4	277	cCa/ca						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002506-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			537	40	213	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0002506-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			820	219	418	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0002506-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			462	59	232	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47098328	47098328	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002506-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			680	50	323	0	ENST00000409792.3:c.6946A>G	p.Thr2316Ala	p.T2316A	ENST00000409792	NM_014159.6	2316	Act/Gct						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3779482	3779482	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001608-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	211	478	0	ENST00000262367.5:c.5566C>T	p.Gln1856Ter	p.Q1856*	ENST00000262367	NM_004380.2	1856	Cag/Tag						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			2019	371	255	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176700715	176700715	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			324	219	281	0	ENST00000439151.2:c.5552A>G	p.Gln1851Arg	p.Q1851R	ENST00000439151	NM_022455.4	1851	cAa/cGa						NEWRECORD																																																																									
ETV1	2115	MSKCC	GRCh37	7	13978862	13978862	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			697	94	325	0	ENST00000405192.2:c.245A>G	p.His82Arg	p.H82R	ENST00000405192	NM_001163147.1	82	cAt/cGt						NEWRECORD																																																																									
NBN	4683	MSKCC	GRCh37	8	90949294	90949294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			962	89	307	0	ENST00000265433.3:c.2194C>A	p.Gln732Lys	p.Q732K	ENST00000265433	NM_002485.4	732	Caa/Aaa						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46245961	46245961	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			636	177	319	0	ENST00000334344.6:c.4055A>G	p.Asp1352Gly	p.D1352G	ENST00000334344	NM_152641.2	1352	gAt/gGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577035	7577035	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			108	242	336	0	ENST00000269305.4:c.903delA	p.Ser303AlafsTer42	p.S303Afs*42	ENST00000269305	NM_001126112.2	301	ccA/cc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0001328-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1296	295	336	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0001328-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	993	329	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579369	7579369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001328-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			110	216	303	0	ENST00000269305.4:c.318C>G	p.Ser106Arg	p.S106R	ENST00000269305	NM_001126112.2	106	agC/agG						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55241677	55241677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001328-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			527	1373	383	0	ENST00000275493.2:c.2125G>A	p.Glu709Lys	p.E709K	ENST00000275493	NM_005228.3	709	Gaa/Aaa						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55156602	55156602	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001328-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			516	42	311	0	ENST00000257290.5:c.3003G>T	p.Lys1001Asn	p.K1001N	ENST00000257290	NM_006206.4	1001	aaG/aaT						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55086984	55086984	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001328-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1273	96	302	0	ENST00000275493.2:c.14G>C	p.Gly5Ala	p.G5A	ENST00000275493	NM_005228.3	5	gGg/gCg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692890	89692890	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001328-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			86	194	162	0	ENST00000371953.3:c.374A>C	p.Lys125Thr	p.K125T	ENST00000371953	NM_000314.4	125	aAa/aCa						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21563434	21563434	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001328-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			904	114	613	0	ENST00000382592.4:c.485T>A	p.Leu162His	p.L162H	ENST00000382592	NM_014572.2	162	cTc/cAc						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0001166-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	244	496	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
SDHB	6390	MSKCC	GRCh37	1	17350515	17350515	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001166-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	134	617	2	ENST00000375499.3:c.595T>G	p.Tyr199Asp	p.Y199D	ENST00000375499	NM_003000.2	199	Tac/Gac						NEWRECORD																																																																									
TMEM127	55654	MSKCC	GRCh37	2	96930957	96930957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001166-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			397	48	531	0	ENST00000258439.3:c.163C>T	p.His55Tyr	p.H55Y	ENST00000258439	NM_001193304.2	55	Cac/Tac						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18524215	18524215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001166-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			644	44	874	1	ENST00000266497.5:c.1727C>T	p.Ala576Val	p.A576V	ENST00000266497		576	gCg/gTg						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46285585	46285585	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000316-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			817	310	619	0	ENST00000334344.6:c.4945G>T	p.Val1649Phe	p.V1649F	ENST00000334344	NM_152641.2	1649	Gtt/Ttt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000316-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	400	934	0	ENST00000269305.4:c.820G>C	p.Val274Leu	p.V274L	ENST00000269305	NM_001126112.2	274	Gtt/Ctt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55221785	55221786	+	missense_variant	Missense_Mutation	DNP	AT	AT	GA			P-0000316-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	691	763	0	ENST00000275493.2:c.829_830delATinsGA	p.Met277Glu	p.M277E	ENST00000275493	NM_005228.3	277	ATg/GAg						NEWRECORD																																																																									
FH	2271	MSKCC	GRCh37	1	241661212	241661212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	110	323	0	ENST00000366560.3:c.1449G>T	p.Lys483Asn	p.K483N	ENST00000366560	NM_000143.3	483	aaG/aaT						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212483979	212483979	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	80	357	0	ENST00000342788.4:c.2224G>C	p.Glu742Gln	p.E742Q	ENST00000342788	NM_005235.2	742	Gaa/Caa						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212812191	212812191	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	99	319	0	ENST00000342788.4:c.385T>A	p.Phe129Ile	p.F129I	ENST00000342788	NM_005235.2	129	Ttt/Att						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134670615	134670615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	86	386	0	ENST00000398015.3:c.526G>T	p.Ala176Ser	p.A176S	ENST00000398015	NM_004441.4	176	Gct/Tct						NEWRECORD																																																																									
E2F3	1871	MSKCC	GRCh37	6	20481637	20481637	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	54	275	0	ENST00000346618.3:c.706A>T	p.Lys236Ter	p.K236*	ENST00000346618	NM_001949.4	236	Aaa/Taa						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50444360	50444360	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	47	212	1	ENST00000331340.3:c.290G>T	p.Arg97Met	p.R97M	ENST00000331340	NM_006060.4	97	aGg/aTg						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81335719	81335720	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	52	250	1	ENST00000222390.5:c.1640_1641delinsTT	p.Trp547Phe	p.W547F	ENST00000222390	NM_000601.4	547	tGG/tTT						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971114	21971114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	27	177	0	ENST00000304494.5:c.244G>T	p.Val82Leu	p.V82L	ENST00000304494	NM_000077.4	82	Gtg/Ttg						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115112479	115112479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	73	234	2	ENST00000257566.3:c.1261C>T	p.Arg421Trp	p.R421W	ENST00000257566	NM_016569.3	421	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578257	7578258	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	61	388	0	ENST00000269305.4:c.591_592delinsTT	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	197	gtGGaa/gtTTaa						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37627316	37627316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	74	280	0	ENST00000447079.4:c.1231G>T	p.Ala411Ser	p.A411S	ENST00000447079	NM_015083.1	411	Gct/Tct						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	77	288	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt						NEWRECORD																																																																									
CHEK2	11200	MSKCC	GRCh37	22	29092889	29092889	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	80	358	0	ENST00000328354.6:c.1095G>T	p.Lys365Asn	p.K365N	ENST00000328354	NM_007194.3	365	aaG/aaT						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39931748	39931748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	72	503	0	ENST00000378444.4:c.2851G>A	p.Asp951Asn	p.D951N	ENST00000378444	NM_001123385.1	951	Gat/Aat						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47028850	47028850	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	59	367	0	ENST00000329236.7:c.154G>T	p.Glu52Ter	p.E52*	ENST00000329236	NM_001204466.1	52	Gag/Tag						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0000129-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			315	454	157	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0003501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	203	457	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29687566	29687566	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144178015		P-0003501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	251	452	1	ENST00000358273.4:c.8222C>T	p.Thr2741Met	p.T2741M	ENST00000358273	NM_001042492.2	2741	aCg/aTg						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	66	425	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat						NEWRECORD																																																																									
PIK3CB	5291	MSKCC	GRCh37	3	138374244	138374244	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	193	683	0	ENST00000289153.2:c.3200A>T	p.Asp1067Val	p.D1067V	ENST00000289153	NM_006219.2	1067	gAc/gTc						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117724379	117724379	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	27	470	0	ENST00000368508.3:c.500G>T	p.Arg167Leu	p.R167L	ENST00000368508	NM_002944.2	167	cGa/cTa						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	441055	441055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			410	83	489	0	ENST00000399788.2:c.1703G>A	p.Arg568His	p.R568H	ENST00000399788	NM_001042603.1	568	cGt/cAt						NEWRECORD																																																																									
ETV6	2120	MSKCC	GRCh37	12	12022652	12022652	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200525003		P-0000867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	27	358	0	ENST00000396373.4:c.758C>T	p.Pro253Leu	p.P253L	ENST00000396373	NM_001987.4	253	cCg/cTg						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67662370	67662370	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			247	17	710	0	ENST00000264010.4:c.1616A>T	p.Asp539Val	p.D539V	ENST00000264010	NM_006565.3	539	gAc/gTc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	222	914	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100998688	100998688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	56	1501	0	ENST00000325455.5:c.1114G>A	p.Asp372Asn	p.D372N	ENST00000325455	NM_001202474.3	372	Gac/Aac						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10267145	10267145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	75	907	0	ENST00000340748.4:c.1273G>A	p.Gly425Ser	p.G425S	ENST00000340748		425	Ggc/Agc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	132	270	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098806	178098806	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	89	501	1	ENST00000397062.3:c.239C>G	p.Thr80Arg	p.T80R	ENST00000397062	NM_006164.4	80	aCa/aGa						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99155357	99155357	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	55	250	0	ENST00000074304.5:c.583G>T	p.Val195Phe	p.V195F	ENST00000074304	NM_001134224.1	195	Gtt/Ttt						NEWRECORD																																																																									
SOX2	6657	MSKCC	GRCh37	3	181430554	181430554	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	131	233	0	ENST00000325404.1:c.406G>C	p.Gly136Arg	p.G136R	ENST00000325404	NM_003106.3	136	Ggc/Cgc						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187627953	187627953	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	109	550	0	ENST00000441802.2:c.3029T>C	p.Val1010Ala	p.V1010A	ENST00000441802	NM_005245.3	1010	gTt/gCt						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	93982095	93982095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	40	563	0	ENST00000369303.4:c.1370G>A	p.Arg457Gln	p.R457Q	ENST00000369303	NM_004440.3	457	cGg/cAg						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117680998	117680998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	36	349	0	ENST00000368508.3:c.3622C>A	p.His1208Asn	p.H1208N	ENST00000368508	NM_002944.2	1208	Cac/Aac						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151880135	151880135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	77	414	1	ENST00000262189.6:c.5189G>T	p.Arg1730Leu	p.R1730L	ENST00000262189	NM_170606.2	1730	cGt/cTt						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55371967	55371967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	58	153	0	ENST00000297316.4:c.657G>T	p.Leu219Phe	p.L219F	ENST00000297316	NM_022454.3	219	ttG/ttT						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135786002	135786002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	52	185	0	ENST00000298552.3:c.1219G>T	p.Val407Leu	p.V407L	ENST00000298552	NM_001162426.1	407	Gtg/Ttg						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32414253	32414253	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	54	367	0	ENST00000332351.3:c.1298C>G	p.Ser433Cys	p.S433C	ENST00000332351	NM_024426.4	433	tCt/tGt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108121538	108121538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	44	374	0	ENST00000278616.4:c.1346G>A	p.Gly449Glu	p.G449E	ENST00000278616	NM_000051.3	449	gGg/gAg						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18762544	18762544	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	36	303	0	ENST00000266497.5:c.4040T>A	p.Val1347Glu	p.V1347E	ENST00000266497		1347	gTg/gAg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49415908	49415908	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	33	325	0	ENST00000301067.7:c.16439A>G	p.Asn5480Ser	p.N5480S	ENST00000301067	NM_003482.3	5480	aAc/aGc						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49440545	49440545	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	100	383	0	ENST00000301067.7:c.4265G>A	p.Trp1422Ter	p.W1422*	ENST00000301067	NM_003482.3	1422	tGg/tAg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49444738	49444738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	82	286	0	ENST00000301067.7:c.2728C>T	p.Pro910Ser	p.P910S	ENST00000301067	NM_003482.3	910	Cct/Tct						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89347116	89347116	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	52	493	0	ENST00000301030.4:c.5834A>G	p.Glu1945Gly	p.E1945G	ENST00000301030	NM_001256183.1	1945	gAg/gGg						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31022877	31022877	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	41	309	1	ENST00000375687.4:c.2362G>T	p.Glu788Ter	p.E788*	ENST00000375687	NM_015338.5	788	Gaa/Taa						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42794409	42794410	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	87	527	0	ENST00000575354.2:c.1489_1490delinsAG	p.Pro497Ser	p.P497S	ENST00000575354	NM_015125.3	497	CCt/AGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0001577-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			106	148	352	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0001577-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			383	272	658	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106545597	106545597	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001577-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			286	231	492	0	ENST00000359195.3:c.3074A>G	p.Asn1025Ser	p.N1025S	ENST00000359195	NM_002649.2	1025	aAc/aGc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	157	260	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0003791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	215	267	1	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134885788	134885788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	128	259	1	ENST00000398015.3:c.1699C>T	p.Arg567Trp	p.R567W	ENST00000398015	NM_004441.4	567	Cgg/Tgg						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142215865	142215865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	35	191	0	ENST00000350721.4:c.5728C>T	p.Leu1910Phe	p.L1910F	ENST00000350721	NM_001184.3	1910	Ctc/Ttc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174241	112174241	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	143	261	0	ENST00000257430.4:c.2950G>T	p.Glu984Ter	p.E984*	ENST00000257430	NM_000038.5	984	Gaa/Taa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175282	112175282	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0003791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	71	264	0	ENST00000257430.4:c.3991A>T	p.Arg1331Ter	p.R1331*	ENST00000257430	NM_000038.5	1331	Aga/Tga						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135796795	135796795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	75	292	0	ENST00000298552.3:c.692C>T	p.Pro231Leu	p.P231L	ENST00000298552	NM_001162426.1	231	cCg/cTg						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133241024	133241024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	56	299	0	ENST00000320574.5:c.2493G>A	p.Met831Ile	p.M831I	ENST00000320574	NM_006231.2	831	atG/atA						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42794986	42794986	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	95	255	0	ENST00000575354.2:c.2066A>C	p.Lys689Thr	p.K689T	ENST00000575354	NM_015125.3	689	aAg/aCg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40747062	40747062	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	63	270	0	ENST00000373198.4:c.3020A>G	p.Asn1007Ser	p.N1007S	ENST00000373198	NM_133170.3	1007	aAc/aGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0000195-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			86	99	399	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	273	314	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
FH	2271	MSKCC	GRCh37	1	241671916	241671916	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	149	324	1	ENST00000366560.3:c.725T>G	p.Leu242Arg	p.L242R	ENST00000366560	NM_000143.3	242	cTt/cGt						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133252043	133252043	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	28	309	0	ENST00000320574.5:c.1167C>G	p.Phe389Leu	p.F389L	ENST00000320574	NM_006231.2	389	ttC/ttG						NEWRECORD																																																																									
SUZ12	23512	MSKCC	GRCh37	17	30325762	30325762	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	54	215	0	ENST00000322652.5:c.1960C>T	p.Arg654Ter	p.R654*	ENST00000322652	NM_015355.2	654	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	216	350	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	80	289	2	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55960993	55960993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	158	313	0	ENST00000263923.4:c.2947C>T	p.Leu983Phe	p.L983F	ENST00000263923	NM_002253.2	983	Ctc/Ttc						NEWRECORD																																																																									
KLF4	9314	MSKCC	GRCh37	9	110250242	110250242	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	81	260	0	ENST00000374672.4:c.433C>A	p.Pro145Thr	p.P145T	ENST00000374672	NM_004235.4	145	Ccc/Acc						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2194572	2194572	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	153	409	0	ENST00000398665.3:c.647A>G	p.Tyr216Cys	p.Y216C	ENST00000398665	NM_032482.2	216	tAc/tGc						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11132442	11132442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	60	437	0	ENST00000344626.4:c.2658G>A	p.Met886Ile	p.M886I	ENST00000344626	NM_003072.3	886	atG/atA						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11144442	11144442	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	38	294	0	ENST00000344626.4:c.3775-1G>A		p.X1259_splice	ENST00000344626	NM_003072.3	1259							NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10597401	10597402	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	A			P-0003240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	184	367	0	ENST00000171111.5:c.1801_1802delinsT	p.Arg601Ter	p.R601*	ENST00000171111	NM_203500.1	601	CGg/Tg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000979-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			902	122	370	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000979-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			202	106	190	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86627164	86627164	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0000979-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			237	29	221	0	ENST00000274376.6:c.540-1G>A		p.X180_splice	ENST00000274376	NM_002890.2	180							NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128829243	128829243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000979-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	35	223	0	ENST00000249373.3:c.251C>T	p.Pro84Leu	p.P84L	ENST00000249373	NM_005631.4	84	cCc/cTc						NEWRECORD																																																																									
ETV6	2120	MSKCC	GRCh37	12	12043910	12043910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000979-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	132	326	0	ENST00000396373.4:c.1289G>A	p.Arg430Gln	p.R430Q	ENST00000396373	NM_001987.4	430	cGa/cAa						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15272000	15272000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000979-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			107	50	72	0	ENST00000263388.2:c.6439G>A	p.Gly2147Ser	p.G2147S	ENST00000263388	NM_000435.2	2147	Ggt/Agt						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32914091	32914094	+	frameshift_variant	Frame_Shift_Del	DEL	ACAG	ACAG	-			P-0000979-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			207	60	194	0	ENST00000380152.3:c.5603_5606delACAG	p.Asp1868ValfsTer5	p.D1868Vfs*5	ENST00000380152		1867	ACAGac/ac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			840	304	551	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0001658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	274	487	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			457	167	385	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0001658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			876	173	618	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	283	570	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89869730	89869740	+	frameshift_variant	Frame_Shift_Del	DEL	AACAAACATTT	AACAAACATTT	-			P-0001658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			829	134	724	0	ENST00000389301.3:c.719_729del	p.Gln240LeufsTer17	p.Q240Lfs*17	ENST00000389301	NM_000135.2	240	cAAATGTTTGTT/c						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0004476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	95	452	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
RHEB	6009	MSKCC	GRCh37	7	151216551	151216551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			62	41	165	0	ENST00000262187.5:c.47C>T	p.Ser16Phe	p.S16F	ENST00000262187	NM_005614.3	16	tCt/tTt						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29416586	29416586	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	120	317	0	ENST00000389048.3:c.4367C>A	p.Pro1456His	p.P1456H	ENST00000389048	NM_004304.4	1456	cCc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112154981	112154981	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	109	376	0	ENST00000257430.4:c.1252G>T	p.Glu418Ter	p.E418*	ENST00000257430	NM_000038.5	418	Gaa/Taa						NEWRECORD																																																																									
MYC	4609	MSKCC	GRCh37	8	128751001	128751001	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	50	351	0	ENST00000377970.2:c.538G>T	p.Ala180Ser	p.A180S	ENST00000377970	NM_002467.4	180	Gcc/Tcc						NEWRECORD																																																																									
MRE11A	4361	MSKCC	GRCh37	11	94219229	94219229	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	56	308	0	ENST00000323929.3:c.175G>T	p.Gly59Cys	p.G59C	ENST00000323929	NM_005591.3	59	Ggt/Tgt						NEWRECORD																																																																									
MRE11A	4361	MSKCC	GRCh37	11	94219241	94219241	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	48	297	0	ENST00000323929.3:c.163A>C	p.Ile55Leu	p.I55L	ENST00000323929	NM_005591.3	55	Att/Ctt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002629-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			619	21	230	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002629-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			615	21	228	0	ENST00000269305.4:c.747G>C	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agC						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			690	229	380	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			594	246	315	0	ENST00000263967.3:c.333G>T	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaT						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120458591	120458591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			684	178	309	0	ENST00000256646.2:c.6754G>A	p.Asp2252Asn	p.D2252N	ENST00000256646	NM_024408.3	2252	Gat/Aat						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25463227	25463227	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			538	181	433	0	ENST00000264709.3:c.2266G>C	p.Glu756Gln	p.E756Q	ENST00000264709	NM_175629.2	756	Gag/Cag						NEWRECORD																																																																									
BMPR1A	657	MSKCC	GRCh37	10	88651921	88651921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			518	178	223	0	ENST00000372037.3:c.268G>A	p.Asp90Asn	p.D90N	ENST00000372037	NM_004329.2	90	Gac/Aac						NEWRECORD																																																																									
HRAS	3265	MSKCC	GRCh37	11	534316	534316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	105	265	1	ENST00000311189.7:c.7G>A	p.Glu3Lys	p.E3K	ENST00000311189		3	Gaa/Aaa						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2213538	2213538	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0002841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	130	339	0	ENST00000398665.3:c.1558G>A	p.Glu520Lys	p.E520K	ENST00000398665	NM_032482.2	520	Gag/Aag						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65330581	65330581	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			783	299	510	2	ENST00000342505.4:c.1065del	p.Asn357ThrfsTer20	p.N357Tfs*20	ENST00000342505	NM_002227.2	355	gaG/ga						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55946319	55946334	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCACCATTCCACTGC	GGCACCATTCCACTGC	-			P-0002841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			648	137	248	0	ENST00000263923.4:c.3849-4_3860del		p.X1283_splice	ENST00000263923	NM_002253.2	1283							NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0000774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			642	192	265	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			279	77	120	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0000774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			580	188	249	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16259289	16259289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	14	88	0	ENST00000375759.3:c.6554C>T	p.Ser2185Phe	p.S2185F	ENST00000375759	NM_015001.2	2185	tCt/tTt						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70405991	70405991	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			632	237	341	0	ENST00000373644.4:c.3505C>T	p.Gln1169Ter	p.Q1169*	ENST00000373644	NM_030625.2	1169	Caa/Taa						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220400	1220400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			687	51	316	0	ENST00000326873.7:c.493G>A	p.Glu165Lys	p.E165K	ENST00000326873	NM_000455.4	165	Gag/Aag						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15349191	15349191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	194	288	0	ENST00000263377.2:c.4086C>G	p.Phe1362Leu	p.F1362L	ENST00000263377	NM_058243.2	1362	ttC/ttG						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40944447	40944447	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			416	220	324	0	ENST00000373198.4:c.2055G>C	p.Lys685Asn	p.K685N	ENST00000373198	NM_133170.3	685	aaG/aaC						NEWRECORD																																																																									
SDHB	6390	MSKCC	GRCh37	1	17371325	17371330	+	inframe_deletion	In_Frame_Del	DEL	ATGGCA	ATGGCA	-			P-0000774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			794	49	378	0	ENST00000375499.3:c.126_131del	p.Ala43_Ile44del	p.A43_I44del	ENST00000375499	NM_003000.2	42	ttTGCCATc/ttc						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36171716	36171720	+	frameshift_variant	Frame_Shift_Del	DEL	CTGAT	CTGAT	-			P-0000774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	254	169	0	ENST00000300305.3:c.845_849del	p.Asp282ValfsTer316	p.D282Vfs*316	ENST00000300305		282	gATCAG/g						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001664-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			196	274	393	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117663563	117663563	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0001664-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			674	313	541	0	ENST00000368508.3:c.4669G>T	p.Val1557Leu	p.V1557L	ENST00000368508	NM_002944.2	1557	Gta/Tta						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106545734	106545734	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001664-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			928	348	458	1	ENST00000359195.3:c.3211C>A	p.Gln1071Lys	p.Q1071K	ENST00000359195	NM_002649.2	1071	Cag/Aag						NEWRECORD																																																																									
MYC	4609	MSKCC	GRCh37	8	128752965	128752965	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001664-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			682	603	456	0	ENST00000377970.2:c.1126G>C	p.Val376Leu	p.V376L	ENST00000377970	NM_002467.4	376	Gtc/Ctc						NEWRECORD																																																																									
CHEK1	1111	MSKCC	GRCh37	11	125514539	125514539	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0001664-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			697	183	304	0	ENST00000428830.2:c.1233+1G>A		p.X411_splice	ENST00000428830	NM_001114121.2	411							NEWRECORD																																																																									
RPTOR	57521	MSKCC	GRCh37	17	78933999	78933999	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001664-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	204	411	0	ENST00000306801.3:c.3599G>T	p.Ser1200Ile	p.S1200I	ENST00000306801	NM_020761.2	1200	aGc/aTc						NEWRECORD																																																																									
HNF1A	6927	MSKCC	GRCh37	12	121416752	121416752	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001664-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	249	497	0	ENST00000257555.6:c.183del	p.Asn62MetfsTer93	p.N62Mfs*93	ENST00000257555		61	Ccc/cc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0002343-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	350	843	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0002343-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			234	192	489	1	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32971177	32971191	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCTGGTAAGTTAAT	TTCTGGTAAGTTAAT	-			P-0002343-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			502	159	676	0	ENST00000380152.3:c.9644_9648+10del		p.X3215_splice	ENST00000380152		3215							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0000973-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			139	96	620	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63852362	63852362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000973-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			216	29	409	0	ENST00000279873.7:c.3140C>T	p.Ser1047Phe	p.S1047F	ENST00000279873	NM_032199.2	1047	tCt/tTt						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23641750	23641750	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000973-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			203	11	520	0	ENST00000261584.4:c.1725G>C	p.Trp575Cys	p.W575C	ENST00000261584	NM_024675.3	575	tgG/tgC						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176562800	176562800	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000973-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			223	15	353	0	ENST00000439151.2:c.696G>C	p.Gln232His	p.Q232H	ENST00000439151	NM_022455.4	232	caG/caC						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10250998	10250998	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000973-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			101	14	219	0	ENST00000340748.4:c.3482C>G	p.Ser1161Cys	p.S1161C	ENST00000340748		1161	tCt/tGt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000216-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	165	203	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
MPL	4352	MSKCC	GRCh37	1	43804950	43804950	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000216-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			680	285	432	0	ENST00000372470.3:c.400G>T	p.Ala134Ser	p.A134S	ENST00000372470	NM_005373.2	134	Gct/Tct						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187527303	187527303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000216-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			754	215	516	0	ENST00000441802.2:c.10271C>T	p.Thr3424Met	p.T3424M	ENST00000441802	NM_005245.3	3424	aCg/aTg						NEWRECORD																																																																									
PLK2	10769	MSKCC	GRCh37	5	57751180	57751180	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000216-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1505	227	519	0	ENST00000274289.3:c.1687G>C	p.Glu563Gln	p.E563Q	ENST00000274289	NM_006622.3	563	Gag/Cag						NEWRECORD																																																																									
FGFR2	2263	MSKCC	GRCh37	10	123247514	123247514	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000216-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			991	350	656	0	ENST00000358487.5:c.1977G>C	p.Lys659Asn	p.K659N	ENST00000358487	NM_000141.4	659	aaG/aaC						NEWRECORD																																																																									
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000216-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			725	656	624	0	ENST00000358487.5:c.1647T>G	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaG						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32911530	32911530	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000216-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			868	184	415	0	ENST00000380152.3:c.3038C>G	p.Ser1013Ter	p.S1013*	ENST00000380152		1013	tCa/tGa						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591886	48591886	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000216-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			736	288	694	0	ENST00000342988.3:c.1049T>G	p.Val350Gly	p.V350G	ENST00000342988	NM_005359.5	350	gTt/gGt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	216	363	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			349	44	178	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	245	271	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187							NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16262489	16262489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			235	25	159	0	ENST00000375759.3:c.9754G>T	p.Val3252Phe	p.V3252F	ENST00000375759	NM_015001.2	3252	Gtc/Ttc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023609	27023609	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	51	263	0	ENST00000324856.7:c.715C>G	p.Pro239Ala	p.P239A	ENST00000324856	NM_006015.4	239	Ccg/Gcg						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25469128	25469128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			915	86	530	0	ENST00000264709.3:c.1330G>A	p.Glu444Lys	p.E444K	ENST00000264709	NM_175629.2	444	Gag/Aag						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212537966	212537966	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			629	56	381	0	ENST00000342788.4:c.1639G>C	p.Glu547Gln	p.E547Q	ENST00000342788	NM_005235.2	547	Gag/Cag						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180043989	180043989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			599	52	385	0	ENST00000261937.6:c.3007G>A	p.Asp1003Asn	p.D1003N	ENST00000261937	NM_182925.4	1003	Gac/Aac						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117642495	117642495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs9489124		P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			890	52	487	1	ENST00000368508.3:c.5704G>A	p.Glu1902Lys	p.E1902K	ENST00000368508	NM_002944.2	1902	Gaa/Aaa						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157150373	157150373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			603	152	396	0	ENST00000346085.5:c.1555G>A	p.Asp519Asn	p.D519N	ENST00000346085	NM_020732.3	519	Gat/Aat						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145741620	145741620	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1435	126	487	0	ENST00000428558.2:c.883G>C	p.Glu295Gln	p.E295Q	ENST00000428558	NM_004260.3	295	Gag/Cag						NEWRECORD																																																																									
RAD51	5888	MSKCC	GRCh37	15	41021830	41021830	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			701	44	392	0	ENST00000267868.3:c.772G>A	p.Glu258Lys	p.E258K	ENST00000267868	NM_002875.4	258	Gag/Aag						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10260605	10260605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1070	110	501	0	ENST00000340748.4:c.2257G>A	p.Asp753Asn	p.D753N	ENST00000340748		753	Gat/Aat						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40790114	40790114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			621	51	360	0	ENST00000373198.4:c.2617G>T	p.Asp873Tyr	p.D873Y	ENST00000373198	NM_133170.3	873	Gac/Tac						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41521952	41521952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			880	55	485	0	ENST00000263253.7:c.814C>T	p.Leu272Phe	p.L272F	ENST00000263253	NM_001429.3	272	Ctc/Ttc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	51	168	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	45	261	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29519754	29519754	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	21	283	0	ENST00000389048.3:c.1817G>A	p.Arg606Lys	p.R606K	ENST00000389048	NM_004304.4	606	aGg/aAg						NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48027574	48027574	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	30	216	0	ENST00000234420.5:c.2452C>G	p.Leu818Val	p.L818V	ENST00000234420	NM_000179.2	818	Ctt/Gtt						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41275259	41275259	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	80	332	0	ENST00000349496.5:c.1425C>G	p.His475Gln	p.H475Q	ENST00000349496	NM_001904.3	475	caC/caG						NEWRECORD																																																																									
FOXP1	27086	MSKCC	GRCh37	3	71021828	71021828	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	84	286	0	ENST00000318789.4:c.1531-1G>A		p.X511_splice	ENST00000318789	NM_032682.5	511							NEWRECORD																																																																									
GATA2	2624	MSKCC	GRCh37	3	128199939	128199939	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	33	177	0	ENST00000341105.2:c.1366C>G	p.Pro456Ala	p.P456A	ENST00000341105	NM_032638.4	456	Ccg/Gcg						NEWRECORD																																																																									
GATA2	2624	MSKCC	GRCh37	3	128199945	128199945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	38	197	0	ENST00000341105.2:c.1360C>G	p.Pro454Ala	p.P454A	ENST00000341105	NM_032638.4	454	Ccc/Gcc						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142285098	142285098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	29	397	2	ENST00000350721.4:c.157G>T	p.Val53Leu	p.V53L	ENST00000350721	NM_001184.3	53	Gta/Tta						NEWRECORD																																																																									
FGFR3	2261	MSKCC	GRCh37	4	1805473	1805473	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188723332		P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	30	481	0	ENST00000260795.2:c.985G>A	p.Val329Ile	p.V329I	ENST00000260795		329	Gtc/Atc						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38955776	38955776	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	107	349	0	ENST00000357387.3:c.2530G>C	p.Glu844Gln	p.E844Q	ENST00000357387	NM_152756.3	844	Gag/Cag						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117622253	117622253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	75	392	0	ENST00000368508.3:c.6617C>A	p.Pro2206His	p.P2206H	ENST00000368508	NM_002944.2	2206	cCt/cAt						NEWRECORD																																																																									
ETV1	2115	MSKCC	GRCh37	7	13975511	13975511	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	17	113	0	ENST00000405192.2:c.376C>T	p.Gln126Ter	p.Q126*	ENST00000405192	NM_001163147.1	126	Cag/Tag						NEWRECORD																																																																									
KMT2C	58508	MSKCC	GRCh37	7	151868351	151868351	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	92	298	0	ENST00000262189.6:c.9451C>T	p.Gln3151Ter	p.Q3151*	ENST00000262189	NM_170606.2	3151	Cag/Tag						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100999276	100999276	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	92	660	0	ENST00000325455.5:c.526T>A	p.Ser176Thr	p.S176T	ENST00000325455	NM_001202474.3	176	Tcc/Acc						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9892236	9892236	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	23	434	0	ENST00000330684.3:c.2254A>G	p.Ser752Gly	p.S752G	ENST00000330684	NM_001134407.1	752	Agt/Ggt						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89350084	89350084	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	53	690	0	ENST00000301030.4:c.2866G>C	p.Glu956Gln	p.E956Q	ENST00000301030	NM_001256183.1	956	Gag/Cag						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39607438	39607438	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	42	339	0	ENST00000262039.4:c.1516A>T	p.Thr506Ser	p.T506S	ENST00000262039	NM_002647.2	506	Act/Tct						NEWRECORD																																																																									
MAP2K2	5605	MSKCC	GRCh37	19	4097279	4097279	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	55	316	1	ENST00000262948.5:c.982G>A	p.Glu328Lys	p.E328K	ENST00000262948	NM_030662.3	328	Gag/Aag						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	59	382	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16260749	16260749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	72	422	0	ENST00000375759.3:c.8014G>A	p.Val2672Met	p.V2672M	ENST00000375759	NM_015001.2	2672	Gtg/Atg						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2956952	2956952	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	58	379	1	ENST00000396946.4:c.2675C>A	p.Ala892Glu	p.A892E	ENST00000396946	NM_032415.4	892	gCa/gAa						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115745	8115745	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	111	620	0	ENST00000346208.3:c.1091G>C	p.Arg364Thr	p.R364T	ENST00000346208		364	aGa/aCa						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115980	8115980	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	63	221	0	ENST00000346208.3:c.1328del	p.Gly443ValfsTer32	p.G443Vfs*32	ENST00000346208		442	atG/at						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0002433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	195	318	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	166	376	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212295773	212295773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1299031105		P-0002433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			771	154	386	1	ENST00000342788.4:c.2540G>A	p.Arg847His	p.R847H	ENST00000342788	NM_005235.2	847	cGt/cAt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27057979	27057979	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	101	261	1	ENST00000324856.7:c.1687C>T	p.Gln563Ter	p.Q563*	ENST00000324856	NM_006015.4	563	Cag/Tag						NEWRECORD																																																																									
MYCN	4613	MSKCC	GRCh37	2	16085668	16085668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	153	325	0	ENST00000281043.3:c.844G>A	p.Val282Met	p.V282M	ENST00000281043	NM_005378.4	282	Gtg/Atg						NEWRECORD																																																																									
ERCC3	2071	MSKCC	GRCh37	2	128047001	128047001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			683	183	442	0	ENST00000285398.2:c.734C>T	p.Pro245Leu	p.P245L	ENST00000285398	NM_000122.1	245	cCc/cTc						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101894993	101894993	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0002433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	185	424	0	ENST00000374994.4:c.546T>A	p.Tyr182Ter	p.Y182*	ENST00000374994	NM_004612.2	182	taT/taA						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49424729	49424729	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			776	142	370	1	ENST00000301067.7:c.13618C>G	p.Arg4540Gly	p.R4540G	ENST00000301067	NM_003482.3	4540	Cgg/Ggg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48603039	48603039	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	222	268	0	ENST00000342988.3:c.1340T>A	p.Met447Lys	p.M447K	ENST00000342988	NM_005359.5	447	aTg/aAg						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59853780	59853781	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0002433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1237	83	469	0	ENST00000259008.2:c.2078_2079del	p.Cys693PhefsTer23	p.C693Ffs*23	ENST00000259008	NM_032043.2	693	tGT/t						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72992703	72992703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1221	69	605	1	ENST00000268489.5:c.1342G>A	p.Asp448Asn	p.D448N	ENST00000268489	NM_006885.3	448	Gac/Aac						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0004395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	178	282	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47045025	47045025	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			53	264	367	1	ENST00000329236.7:c.2117A>T	p.His706Leu	p.H706L	ENST00000329236	NM_001204466.1	706	cAc/cTc						NEWRECORD																																																																									
RAF1	5894	MSKCC	GRCh37	3	12629089	12629089	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0004395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	89	237	0	ENST00000251849.4:c.1417+1G>A		p.X473_splice	ENST00000251849	NM_002880.3	473							NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47164973	47164973	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	89	278	0	ENST00000409792.3:c.1153A>G	p.Arg385Gly	p.R385G	ENST00000409792	NM_014159.6	385	Aga/Gga						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145739058	145739058	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	80	212	0	ENST00000428558.2:c.2097C>A	p.Asn699Lys	p.N699K	ENST00000428558	NM_004260.3	699	aaC/aaA						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72992693	72992693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	165	619	0	ENST00000268489.5:c.1352G>T	p.Cys451Phe	p.C451F	ENST00000268489	NM_006885.3	451	tGc/tTc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221334	1221334	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			57	146	306	0	ENST00000326873.7:c.857T>G	p.Leu286Arg	p.L286R	ENST00000326873	NM_000455.4	286	cTg/cGg						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44950111	44950111	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0004395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	397	456	0	ENST00000377967.4:c.3878+2T>G		p.X1293_splice	ENST00000377967	NM_021140.2	1293							NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0002359-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			840	25	392	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt						NEWRECORD																																																																									
RFWD2	64326	MSKCC	GRCh37	1	176104201	176104201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002359-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			793	63	355	0	ENST00000367669.3:c.913C>A	p.Pro305Thr	p.P305T	ENST00000367669	NM_022457.5	305	Cct/Act						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30729875	30729875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0002359-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	41	235	0	ENST00000359013.4:c.1472-1G>A		p.X491_splice	ENST00000359013	NM_001024847.2	491							NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66356129	66356129	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002359-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			736	82	511	0	ENST00000273854.3:c.1368G>T	p.Gln456His	p.Q456H	ENST00000273854	NM_004439.5	456	caG/caT						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49447041	49447041	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002359-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			887	82	534	0	ENST00000301067.7:c.903C>G	p.Phe301Leu	p.F301L	ENST00000301067	NM_003482.3	301	ttC/ttG						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1218479	1218479	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002359-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	68	444	0	ENST00000326873.7:c.354C>G	p.Tyr118Ter	p.Y118*	ENST00000326873	NM_000455.4	118	taC/taG						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610150	10610150	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002359-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			750	79	523	0	ENST00000171111.5:c.560T>A	p.Ile187Asn	p.I187N	ENST00000171111	NM_203500.1	187	aTc/aAc						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11169566	11169566	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0002359-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	52	368	0	ENST00000344626.4:c.4635+1G>C		p.X1545_splice	ENST00000344626	NM_003072.3	1545							NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53224560	53224560	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002359-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			841	73	689	0	ENST00000375401.3:c.3153G>C	p.Leu1051Phe	p.L1051F	ENST00000375401	NM_004187.3	1051	ttG/ttC						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0001860-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			188	381	546	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0001860-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			766	478	591	2	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg						NEWRECORD																																																																									
RFWD2	64326	MSKCC	GRCh37	1	175916344	175916344	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001860-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			990	440	509	0	ENST00000367669.3:c.2165A>C	p.Gln722Pro	p.Q722P	ENST00000367669	NM_022457.5	722	cAg/cCg						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52598190	52598190	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001860-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	497	612	0	ENST00000394830.3:c.3676G>C	p.Glu1226Gln	p.E1226Q	ENST00000394830	NM_018313.4	1226	Gaa/Caa						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2969662	2969662	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001860-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	198	474	0	ENST00000396946.4:c.1617C>A	p.Cys539Ter	p.C539*	ENST00000396946	NM_032415.4	539	tgC/tgA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578192	7578192	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001860-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			177	368	521	0	ENST00000269305.4:c.657delC	p.Tyr220MetfsTer27	p.Y220Mfs*27	ENST00000269305	NM_001126112.2	219	ccC/cc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002795-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			678	242	349	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41277230	41277230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002795-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	113	238	0	ENST00000349496.5:c.1699G>A	p.Glu567Lys	p.E567K	ENST00000349496	NM_001904.3	567	Gaa/Aaa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398123121		P-0002795-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			445	76	226	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0000742-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	94	177	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000742-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	142	147	0	ENST00000257430.4:c.3944C>A	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tAa						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2951838	2951838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199916182		P-0000742-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	238	341	0	ENST00000396946.4:c.3112G>A	p.Ala1038Thr	p.A1038T	ENST00000396946	NM_032415.4	1038	Gcc/Acc						NEWRECORD																																																																									
MYOD1	4654	MSKCC	GRCh37	11	17743002	17743002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000742-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	39	276	0	ENST00000250003.3:c.910G>A	p.Ala304Thr	p.A304T	ENST00000250003	NM_002478.4	304	Gcc/Acc						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66905872	66905872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000742-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	131	225	0	ENST00000374690.3:c.1789G>A	p.Ala597Thr	p.A597T	ENST00000374690	NM_000044.3	597	Gcc/Acc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			242	199	445	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			116	38	224	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0001754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			418	155	529	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89858913	89858913	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199967286		P-0001754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			582	105	294	0	ENST00000389301.3:c.1049G>A	p.Arg350Gln	p.R350Q	ENST00000389301	NM_000135.2	350	cGg/cAg						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198257128	198257128	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	131	445	0	ENST00000335508.6:c.3814A>G	p.Ile1272Val	p.I1272V	ENST00000335508	NM_012433.2	1272	Atc/Gtc						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180052953	180052953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			583	93	424	0	ENST00000261937.6:c.1337C>T	p.Thr446Met	p.T446M	ENST00000261937	NM_182925.4	446	aCg/aTg						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28631496	28631496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			503	74	445	0	ENST00000241453.7:c.472G>A	p.Val158Met	p.V158M	ENST00000241453	NM_004119.2	158	Gtg/Atg						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2130367	2130367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			641	98	381	0	ENST00000219476.3:c.3599G>A	p.Arg1200Gln	p.R1200Q	ENST00000219476	NM_000548.3	1200	cGg/cAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173851	112173851	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	72	357	0	ENST00000257430.4:c.2560del	p.Arg854GlufsTer7	p.R854Efs*7	ENST00000257430	NM_000038.5	854	Aga/ga						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001061-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			175	110	347	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156838389	156838389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001061-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	43	319	0	ENST00000524377.1:c.667G>A	p.Glu223Lys	p.E223K	ENST00000524377	NM_002529.3	223	Gag/Aag						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001061-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			155	52	290	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	347756	347756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001061-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			162	40	482	0	ENST00000262320.3:c.1750G>A	p.Ala584Thr	p.A584T	ENST00000262320	NM_003502.3	584	Gct/Act						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9546919	9546919	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0001061-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			151	13	333	0	ENST00000353224.5:c.1103C>G	p.Ser368Ter	p.S368*	ENST00000353224	NM_177990.2	368	tCa/tGa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0002218-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1017	434	368	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002218-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			475	400	307	1	ENST00000269305.4:c.742C>G	p.Arg248Gly	p.R248G	ENST00000269305	NM_001126112.2	248	Cgg/Ggg						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48941696	48941696	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002218-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			584	216	336	0	ENST00000267163.4:c.1010del	p.Leu337TrpfsTer12	p.L337Wfs*12	ENST00000267163	NM_000321.2	336	Ttt/tt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577515	7577515	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003270-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			164	12	232	0	ENST00000269305.4:c.766A>C	p.Thr256Pro	p.T256P	ENST00000269305	NM_001126112.2	256	Aca/Cca						NEWRECORD																																																																									
ERCC2	2068	MSKCC	GRCh37	19	45867709	45867709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200895828		P-0003270-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			164	11	321	0	ENST00000391945.4:c.691G>A	p.Val231Met	p.V231M	ENST00000391945	NM_000400.3	231	Gtg/Atg						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29462571	29462571	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003270-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			265	20	338	0	ENST00000389048.3:c.2330A>G	p.Gln777Arg	p.Q777R	ENST00000389048	NM_004304.4	777	cAg/cGg						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212248726	212248726	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003270-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			501	38	276	0	ENST00000342788.4:c.3541C>T	p.Gln1181Ter	p.Q1181*	ENST00000342788	NM_005235.2	1181	Caa/Taa						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86627319	86627319	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0003270-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			528	66	201	0	ENST00000274376.6:c.692+2T>A		p.X231_splice	ENST00000274376	NM_002890.2	231							NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056402	26056402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003270-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			615	68	234	0	ENST00000343677.2:c.255G>C	p.Lys85Asn	p.K85N	ENST00000343677	NM_005319.3	85	aaG/aaC						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152163826	152163826	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003270-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			473	45	344	1	ENST00000206249.3:c.547C>G	p.Arg183Gly	p.R183G	ENST00000206249	NM_000125.3	183	Cgc/Ggc						NEWRECORD																																																																									
FGFR1	2260	MSKCC	GRCh37	8	38271752	38271752	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003270-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			253	14	343	0	ENST00000425967.3:c.2197C>A	p.Pro733Thr	p.P733T	ENST00000425967	NM_001174067.1	733	Ccc/Acc						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717778	89717778	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0003270-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			285	34	138	0	ENST00000371953.3:c.801+2T>G		p.X267_splice	ENST00000371953	NM_000314.4	267							NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29654737	29654737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003270-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			469	36	272	0	ENST00000358273.4:c.5489G>T	p.Arg1830Leu	p.R1830L	ENST00000358273	NM_001042492.2	1830	cGc/cTc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001518-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1031	33	525	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53230892	53230892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001518-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	22	260	0	ENST00000375401.3:c.1901G>A	p.Arg634His	p.R634H	ENST00000375401	NM_004187.3	634	cGc/cAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0004432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	248	514	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117686868	117686868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	68	445	0	ENST00000368508.3:c.2849C>T	p.Ser950Phe	p.S950F	ENST00000368508	NM_002944.2	950	tCt/tTt						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061113	38061113	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			67	12	49	0	ENST00000250448.2:c.876G>C	p.Glu292Asp	p.E292D	ENST00000250448	NM_004496.3	292	gaG/gaC						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17950340	17950340	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	73	450	2	ENST00000458235.1:c.1387C>A	p.His463Asn	p.H463N	ENST00000458235	NM_000215.3	463	Cac/Aac						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0004432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	174	356	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0003623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	8	213	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412030	116412044	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TACTTTTCCAGAAGG	TACTTTTCCAGAAGG	-			P-0003623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	39	198	0	ENST00000397752.3:c.3017_3028+3delCTTTTCCAGAAGGTA		p.X1006_splice	ENST00000397752	NM_000245.2	1006							NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46244934	46244934	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0003623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	10	410	0	ENST00000334344.6:c.3028A>T	p.Lys1010Ter	p.K1010*	ENST00000334344	NM_152641.2	1010	Aaa/Taa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0003234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	426	493	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
CDC73	79577	MSKCC	GRCh37	1	193181550	193181550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	112	473	0	ENST00000367435.3:c.1097C>A	p.Ala366Glu	p.A366E	ENST00000367435	NM_024529.4	366	gCa/gAa						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47162267	47162267	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	102	387	0	ENST00000409792.3:c.3859C>A	p.Gln1287Lys	p.Q1287K	ENST00000409792	NM_014159.6	1287	Cag/Aag						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106196702	106196702	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	122	450	0	ENST00000380013.4:c.5035T>C	p.Tyr1679His	p.Y1679H	ENST00000380013	NM_001127208.2	1679	Tac/Cac						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508526	106508526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	226	124	0	ENST00000359195.3:c.520G>A	p.Glu174Lys	p.E174K	ENST00000359195	NM_002649.2	174	Gag/Aag						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2213636	2213636	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	82	370	0	ENST00000398665.3:c.1656T>G	p.Asp552Glu	p.D552E	ENST00000398665	NM_032482.2	552	gaT/gaG						NEWRECORD																																																																									
PPP6C	5537	MSKCC	GRCh37	9	127915996	127915997	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0003234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	37	585	0	ENST00000373547.4:c.484_485del	p.Val162ProfsTer7	p.V162Pfs*7	ENST00000373547	NM_002721.4	162	GTc/c						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0000636-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	134	322	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52442023	52442023	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000636-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			190	118	243	0	ENST00000460680.1:c.326G>T	p.Gly109Val	p.G109V	ENST00000460680	NM_004656.3	109	gGa/gTa						NEWRECORD																																																																									
ETV1	2115	MSKCC	GRCh37	7	13975399	13975399	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs186330943		P-0000636-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	79	206	0	ENST00000405192.2:c.488G>A	p.Arg163Gln	p.R163Q	ENST00000405192	NM_001163147.1	163	cGg/cAg						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15281190	15281190	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000636-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			488	50	544	0	ENST00000263388.2:c.5066G>C	p.Gly1689Ala	p.G1689A	ENST00000263388	NM_000435.2	1689	gGt/gCt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602581	10602581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002571-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	247	433	0	ENST00000171111.5:c.997G>T	p.Gly333Cys	p.G333C	ENST00000171111	NM_203500.1	333	Ggc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002571-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			383	286	408	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120465394	120465394	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002571-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	86	252	0	ENST00000256646.2:c.4867G>T	p.Val1623Phe	p.V1623F	ENST00000256646	NM_024408.3	1623	Gtc/Ttc						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134911589	134911589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002571-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	228	456	0	ENST00000398015.3:c.2054G>T	p.Gly685Val	p.G685V	ENST00000398015	NM_004441.4	685	gGt/gTt						NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056022	26056022	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002571-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			697	209	402	0	ENST00000343677.2:c.635A>T	p.Lys212Met	p.K212M	ENST00000343677	NM_005319.3	212	aAg/aTg						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117662368	117662368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002571-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	279	531	0	ENST00000368508.3:c.5009C>T	p.Thr1670Ile	p.T1670I	ENST00000368508	NM_002944.2	1670	aCt/aTt						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508721	106508721	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002571-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			630	223	453	0	ENST00000359195.3:c.715G>C	p.Asp239His	p.D239H	ENST00000359195	NM_002649.2	239	Gac/Cac						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220578	1220578	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0002571-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	156	386	0	ENST00000326873.7:c.598-2A>G		p.X200_splice	ENST00000326873	NM_000455.4	200							NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29422343	29422343	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002571-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	147	348	0	ENST00000358273.4:c.17del	p.Pro6ArgfsTer18	p.P6Rfs*18	ENST00000358273	NM_001042492.2	6	Ccg/cg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108202644	108202647	+	frameshift_variant	Frame_Shift_Del	DEL	TTTG	TTTG	-			P-0003642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	39	323	0	ENST00000278616.4:c.7671_7674del	p.Phe2558LeufsTer5	p.F2558Lfs*5	ENST00000278616	NM_000051.3	2556	acTTTG/ac						NEWRECORD																																																																									
JUN	3725	MSKCC	GRCh37	1	59247863	59247864	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0003642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	91	650	0	ENST00000371222.2:c.879_880del	p.Glu293AspfsTer16	p.E293Dfs*16	ENST00000371222	NM_002228.3	293	gaGCtg/gatg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0003551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	824	324	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0003551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	106	325	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16254863	16254863	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	43	317	0	ENST00000375759.3:c.2128G>C	p.Glu710Gln	p.E710Q	ENST00000375759	NM_015001.2	710	Gag/Cag						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57858570	57858570	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	40	618	0	ENST00000228682.2:c.308C>G	p.Pro103Arg	p.P103R	ENST00000228682	NM_005269.2	103	cCc/cGc						NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56875697	56875697	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	229	505	0	ENST00000308159.5:c.2301T>G	p.Ser767Arg	p.S767R	ENST00000308159	NM_014669.4	767	agT/agG						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578486	7578486	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	111	336	0	ENST00000269305.4:c.444T>A	p.Asp148Glu	p.D148E	ENST00000269305	NM_001126112.2	148	gaT/gaA						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	45	169	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151846177	151846177	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	109	308	0	ENST00000262189.6:c.12835C>T	p.Gln4279Ter	p.Q4279*	ENST00000262189	NM_170606.2	4279	Cag/Tag						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151846233	151846233	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	77	220	0	ENST00000262189.6:c.12779C>G	p.Ser4260Cys	p.S4260C	ENST00000262189	NM_170606.2	4260	tCc/tGc						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8100388	8100388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	197	515	0	ENST00000346208.3:c.362C>T	p.Ser121Phe	p.S121F	ENST00000346208		121	tCc/tTc						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115947	8115948	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0003772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	71	224	0	ENST00000346208.3:c.1293_1294del	p.Pro432ThrfsTer74	p.P432Tfs*74	ENST00000346208		431	ggACca/ggca						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0001123-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			517	302	308	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0001123-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			471	80	597	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001123-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			229	73	249	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143094876	143094876	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002103-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1442	133	488	0	ENST00000262992.4:c.1268T>G	p.Leu423Arg	p.L423R	ENST00000262992	NM_001101669.1	423	cTt/cGt						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32171570	32171570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002103-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1019	128	450	0	ENST00000375023.3:c.3208G>T	p.Gly1070Cys	p.G1070C	ENST00000375023	NM_004557.3	1070	Ggt/Tgt						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135781080	135781080	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0002103-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1111	150	620	0	ENST00000298552.3:c.1885A>T	p.Lys629Ter	p.K629*	ENST00000298552	NM_001162426.1	629	Aag/Tag						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115823	8115823	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002574-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			458	52	387	0	ENST00000346208.3:c.1169C>A	p.Ser390Ter	p.S390*	ENST00000346208		390	tCg/tAg						NEWRECORD																																																																									
KMT2D	8085	MSKCC	GRCh37	12	49433950	49433950	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780306423		P-0002574-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			104	99	212	0	ENST00000301067.7:c.7603C>T	p.Arg2535Cys	p.R2535C	ENST00000301067	NM_003482.3	2535	Cgt/Tgt						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56493621	56493621	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0002574-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			146	92	283	0	ENST00000267101.3:c.2938-1G>T		p.X980_splice	ENST00000267101	NM_001982.3	980							NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0003250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	235	201	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47125222	47125222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	45	231	0	ENST00000409792.3:c.6048G>T	p.Trp2016Cys	p.W2016C	ENST00000409792	NM_014159.6	2016	tgG/tgT						NEWRECORD																																																																									
FGFR4	2264	MSKCC	GRCh37	5	176519646	176519646	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	20	144	0	ENST00000292408.4:c.919-1G>A		p.X307_splice	ENST00000292408	NM_213647.1	307							NEWRECORD																																																																									
STAT5A	6776	MSKCC	GRCh37	17	40447742	40447742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	58	559	0	ENST00000345506.4:c.481G>A	p.Glu161Lys	p.E161K	ENST00000345506	NM_003152.3	161	Gag/Aag						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001895-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			878	22	411	1	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0001895-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			758	63	389	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29449800	29449800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs76742576		P-0001895-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			497	92	297	0	ENST00000389048.3:c.3055G>A	p.Val1019Ile	p.V1019I	ENST00000389048	NM_004304.4	1019	Gtc/Atc						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226595556	226595558	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0001895-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			846	92	302	0	ENST00000366794.5:c.73_75del	p.Ser25del	p.S25del	ENST00000366794	NM_001618.3	25	AGC/-						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0003274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	237	320	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0003274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	240	258	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0003274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	129	318	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001017-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	9	305	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112170679	112170679	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0001017-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			245	88	292	0	ENST00000257430.4:c.1775T>A	p.Leu592Ter	p.L592*	ENST00000257430	NM_000038.5	592	tTa/tAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs864622237		P-0001017-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	352	247	0	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac						NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056588	26056590	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs751086925		P-0001017-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			650	135	153	0	ENST00000343677.2:c.67_69del	p.Lys23del	p.K23del	ENST00000343677	NM_005319.3	23	AAG/-						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151891154	151891154	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001976-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	127	341	0	ENST00000262189.6:c.4600C>T	p.Gln1534Ter	p.Q1534*	ENST00000262189	NM_170606.2	1534	Cag/Tag						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29654694	29654694	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001976-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			235	327	418	0	ENST00000358273.4:c.5446G>T	p.Glu1816Ter	p.E1816*	ENST00000358273	NM_001042492.2	1816	Gag/Tag						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31022388	31022388	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs868446207		P-0001976-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	55	241	1	ENST00000375687.4:c.1873C>T	p.Arg625Ter	p.R625*	ENST00000375687	NM_015338.5	625	Cga/Tga						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67589594	67589596	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0001976-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			659	94	319	0	ENST00000274335.5:c.1358_1360del	p.Asn453del	p.N453del	ENST00000274335		453	AAC/-						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89653835	89653835	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001976-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			301	242	333	0	ENST00000371953.3:c.133delG	p.Val45TyrfsTer9	p.V45Yfs*9	ENST00000371953	NM_000314.4	45	Gta/ta						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16255968	16255968	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	30	415	0	ENST00000375759.3:c.3233C>G	p.Ser1078Ter	p.S1078*	ENST00000375759	NM_015001.2	1078	tCa/tGa						NEWRECORD																																																																									
CTLA4	1493	MSKCC	GRCh37	2	204735510	204735510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	30	452	1	ENST00000302823.3:c.311C>T	p.Thr104Met	p.T104M	ENST00000302823	NM_005214.4	104	aCg/aTg						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52692222	52692222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	31	673	0	ENST00000394830.3:c.638C>G	p.Ser213Cys	p.S213C	ENST00000394830	NM_018313.4	213	tCt/tGt						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142266679	142266679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			410	160	618	0	ENST00000350721.4:c.3245G>T	p.Arg1082Leu	p.R1082L	ENST00000350721	NM_001184.3	1082	cGt/cTt						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55593648	55593648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	83	576	2	ENST00000288135.5:c.1714G>T	p.Asp572Tyr	p.D572Y	ENST00000288135	NM_000222.2	572	Gac/Tac						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187519130	187519130	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			180	33	508	0	ENST00000441802.2:c.12253C>G	p.Gln4085Glu	p.Q4085E	ENST00000441802	NM_005245.3	4085	Cag/Gag						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187542177	187542177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	50	673	0	ENST00000441802.2:c.5563C>T	p.Pro1855Ser	p.P1855S	ENST00000441802	NM_005245.3	1855	Cca/Tca						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1255449	1255449	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	28	449	0	ENST00000310581.5:c.3110C>G	p.Ser1037Cys	p.S1037C	ENST00000310581	NM_198253.2	1037	tCt/tGt						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86679595	86679595	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			492	54	607	0	ENST00000274376.6:c.2756C>G	p.Ser919Ter	p.S919*	ENST00000274376	NM_002890.2	919	tCa/tGa						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180030299	180030299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			241	77	572	0	ENST00000261937.6:c.3985G>T	p.Gly1329Cys	p.G1329C	ENST00000261937	NM_182925.4	1329	Ggc/Tgc						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152265628	152265628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	37	279	0	ENST00000206249.3:c.1081G>A	p.Ala361Thr	p.A361T	ENST00000206249	NM_000125.3	361	Gcg/Acg						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2956934	2956934	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			277	24	390	0	ENST00000396946.4:c.2693A>G	p.Gln898Arg	p.Q898R	ENST00000396946	NM_032415.4	898	cAg/cGg						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50444333	50444333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			359	39	388	0	ENST00000331340.3:c.263C>T	p.Ser88Leu	p.S88L	ENST00000331340	NM_006060.4	88	tCg/tTg						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139399835	139399835	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	39	424	0	ENST00000277541.6:c.4513T>G	p.Cys1505Gly	p.C1505G	ENST00000277541	NM_017617.3	1505	Tgt/Ggt						NEWRECORD																																																																									
FGFR2	2263	MSKCC	GRCh37	10	123239450	123239450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			383	50	469	0	ENST00000358487.5:c.2387C>T	p.Ser796Phe	p.S796F	ENST00000358487	NM_000141.4	796	tCt/tTt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108170479	108170479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			382	48	570	0	ENST00000278616.4:c.5044G>C	p.Asp1682His	p.D1682H	ENST00000278616	NM_000051.3	1682	Gat/Cat						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	464357	464357	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			314	45	766	0	ENST00000399788.2:c.837G>C	p.Met279Ile	p.M279I	ENST00000399788	NM_001042603.1	279	atG/atC						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28893659	28893659	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			313	37	418	0	ENST00000282397.4:c.3187C>G	p.Leu1063Val	p.L1063V	ENST00000282397	NM_002019.4	1063	Ctg/Gtg						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11144835	11144835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			132	82	389	0	ENST00000344626.4:c.3910C>T	p.Gln1304Ter	p.Q1304*	ENST00000344626	NM_003072.3	1304	Cag/Tag						NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52716051	52716051	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	33	587	0	ENST00000322088.6:c.616A>G	p.Ile206Val	p.I206V	ENST00000322088	NM_014225.5	206	Atc/Gtc						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70345945	70345945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			159	42	336	0	ENST00000374080.3:c.2482G>C	p.Asp828His	p.D828H	ENST00000374080		828	Gat/Cat						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21968238	21968238	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			154	109	377	0	ENST00000304494.5:c.461del	p.Ile154ThrfsTer39	p.I154Tfs*39	ENST00000304494	NM_000077.4	154	aTc/ac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577576	7577578	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			129	63	427	0	ENST00000269305.4:c.703_705del	p.Asn235del	p.N235del	ENST00000269305	NM_001126112.2	235	AAC/-						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0000431-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	26	100	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9984844	9984844	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0003856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	107	557	0	ENST00000330684.3:c.1121A>T	p.Lys374Met	p.K374M	ENST00000330684	NM_001134407.1	374	aAg/aTg						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226576371	226576371	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			2416	489	644	1	ENST00000366794.5:c.703G>C	p.Glu235Gln	p.E235Q	ENST00000366794	NM_001618.3	235	Gaa/Caa						NEWRECORD																																																																									
MSH2	4436	MSKCC	GRCh37	2	47641421	47641421	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			790	419	526	0	ENST00000233146.2:c.806C>G	p.Ser269Ter	p.S269*	ENST00000233146	NM_000251.2	269	tCa/tGa						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86672267	86672267	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			639	305	358	0	ENST00000274376.6:c.2069T>G	p.Phe690Cys	p.F690C	ENST00000274376	NM_002890.2	690	tTt/tGt						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419909	152419909	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	234	232	0	ENST00000206249.3:c.1596C>G	p.Asn532Lys	p.N532K	ENST00000206249	NM_000125.3	532	aaC/aaG						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	152012253	152012253	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0000201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	1031	631	0	ENST00000262189.6:c.560C>G	p.Ser187Ter	p.S187*	ENST00000262189	NM_170606.2	187	tCa/tGa						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56487568	56487568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			536	305	455	0	ENST00000267101.3:c.1501G>A	p.Asp501Asn	p.D501N	ENST00000267101	NM_001982.3	501	Gac/Aac						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115112079	115112079	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			568	346	390	1	ENST00000257566.3:c.1661C>G	p.Ser554Trp	p.S554W	ENST00000257566	NM_016569.3	554	tCg/tGg						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115118709	115118709	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			901	643	446	4	ENST00000257566.3:c.632A>C	p.Asn211Thr	p.N211T	ENST00000257566	NM_016569.3	211	aAc/aCc						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68845585	68845585	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0000201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			166	435	322	4	ENST00000261769.5:c.833-2A>G		p.X278_splice	ENST00000261769	NM_004360.3	278							NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89653796	89653798	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0000201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			399	369	455	1	ENST00000371953.3:c.97_99delATT	p.Ile33del	p.I33del	ENST00000371953	NM_000314.4	32	ATT/-						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115120810	115120810	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			510	328	381	3	ENST00000257566.3:c.196delG	p.Asp66IlefsTer22	p.D66Ifs*22	ENST00000257566	NM_016569.3	66	Gat/at						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	95	293	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	68	221	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg						NEWRECORD																																																																									
ERCC3	2071	MSKCC	GRCh37	2	128050388	128050388	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	56	231	0	ENST00000285398.2:c.269C>G	p.Ser90Cys	p.S90C	ENST00000285398	NM_000122.1	90	tCt/tGt						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142171969	142171969	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0003196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	56	309	0	ENST00000350721.4:c.7761+1G>T		p.X2587_splice	ENST00000350721	NM_001184.3	2587							NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11129671	11129671	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	76	292	0	ENST00000344626.4:c.2481del	p.Ser828ProfsTer3	p.S828Pfs*3	ENST00000344626	NM_003072.3	826	gCc/gc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0004221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	154	564	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000466-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			469	47	927	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38060986	38060986	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000466-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	24	331	0	ENST00000250448.2:c.1003C>A	p.Leu335Met	p.L335M	ENST00000250448	NM_004496.3	335	Ctg/Atg						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12028657	12028657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000466-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			757	70	495	1	ENST00000353533.5:c.860G>A	p.Arg287His	p.R287H	ENST00000353533	NM_003010.3	287	cGc/cAc						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36164704	36164710	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGCGA	CTTGCGA	-			P-0000466-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	64	653	0	ENST00000300305.3:c.1165_1171delTCGCAAG	p.Ser389ArgfsTer203	p.S389Rfs*203	ENST00000300305		389	TCGCAAGcg/cg						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0000864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			152	209	280	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56161716	56161716	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			511	376	268	0	ENST00000399503.3:c.1213del	p.Arg405ValfsTer31	p.R405Vfs*31	ENST00000399503	NM_005921.1	405	Cgt/gt						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56167804	56167805	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0000864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			679	186	214	0	ENST00000399503.3:c.1370_1371delCA	p.Thr457SerfsTer3	p.T457Sfs*3	ENST00000399503	NM_005921.1	457	ACa/a						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0001151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			793	204	593	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120459250	120459250	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	42	182	0	ENST00000256646.2:c.6095A>G	p.His2032Arg	p.H2032R	ENST00000256646	NM_024408.3	2032	cAt/cGt						NEWRECORD																																																																									
PHOX2B	8929	MSKCC	GRCh37	4	41748290	41748290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			785	85	572	1	ENST00000226382.2:c.479C>T	p.Ala160Val	p.A160V	ENST00000226382	NM_003924.3	160	gCg/gTg						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152201874	152201874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			789	72	370	0	ENST00000206249.3:c.728G>A	p.Arg243His	p.R243H	ENST00000206249	NM_000125.3	243	cGt/cAt						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29683540	29683540	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	137	299	2	ENST00000358273.4:c.7678G>T	p.Glu2560Ter	p.E2560*	ENST00000358273	NM_001042492.2	2560	Gaa/Taa						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56492689	56492689	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0001151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			763	446	499	0	ENST00000407977.2:c.250C>T	p.Gln84Ter	p.Q84*	ENST00000407977		84	Cag/Tag						NEWRECORD																																																																									
RAF1	5894	MSKCC	GRCh37	3	12645690	12645690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	102	243	0	ENST00000251849.4:c.779C>T	p.Thr260Ile	p.T260I	ENST00000251849	NM_002880.3	260	aCa/aTa						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55979498	55979498	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0004121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	230	392	0	ENST00000263923.4:c.949A>T	p.Lys317Ter	p.K317*	ENST00000263923	NM_002253.2	317	Aag/Tag						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1279443	1279443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	92	357	0	ENST00000310581.5:c.2093G>A	p.Arg698Gln	p.R698Q	ENST00000310581	NM_198253.2	698	cGg/cAg						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180047881	180047881	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	91	250	0	ENST00000261937.6:c.2294T>C	p.Val765Ala	p.V765A	ENST00000261937	NM_182925.4	765	gTg/gCg						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	29041210	29041210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	77	426	0	ENST00000282397.4:c.218G>A	p.Arg73Lys	p.R73K	ENST00000282397	NM_002019.4	73	aGg/aAg						NEWRECORD																																																																									
PDPK1	5170	MSKCC	GRCh37	16	2647274	2647274	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0004121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	19	250	0	ENST00000342085.4:c.1552A>T	p.Thr518Ser	p.T518S	ENST00000342085	NM_002613.4	518	Acg/Tcg						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3778078	3778078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	22	323	1	ENST00000262367.5:c.6970C>A	p.Gln2324Lys	p.Q2324K	ENST00000262367	NM_004380.2	2324	Cag/Aag						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220694	1220694	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	192	399	0	ENST00000326873.7:c.712A>T	p.Ile238Phe	p.I238F	ENST00000326873	NM_000455.4	238	Atc/Ttc						NEWRECORD																																																																									
AKT2	208	MSKCC	GRCh37	19	40742220	40742220	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	162	478	0	ENST00000392038.2:c.904A>T	p.Ser302Cys	p.S302C	ENST00000392038	NM_001626.4	302	Agt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579849	7579849	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	153	380	0	ENST00000269305.4:c.64del	p.Leu22TyrfsTer22	p.L22Yfs*22	ENST00000269305	NM_001126112.2	22	Cta/ta						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001437-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			353	14	197	0	ENST00000269305.4:c.461G>A	p.Gly154Asp	p.G154D	ENST00000269305	NM_001126112.2	154	gGc/gAc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000423-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			244	125	205	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0001941-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			45	41	379	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15272166	15272206	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGCCCGGGCAGGCCAGCGTCAGCTTCTTGCCCCGCCCCC	GGGGCCCGGGCAGGCCAGCGTCAGCTTCTTGCCCCGCCCCC	-			P-0001941-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			13	22	62	0	ENST00000263388.2:c.6233_6273del	p.Arg2078ProfsTer3	p.R2078Pfs*3	ENST00000263388	NM_000435.2	2078	cGGGGGCGGGGCAAGAAGCTGACGCTGGCCTGCCCGGGCCCC/c						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115112438	115112438	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	82	201	0	ENST00000257566.3:c.1302C>G	p.Asp434Glu	p.D434E	ENST00000257566	NM_016569.3	434	gaC/gaG						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67591153	67591153	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0003150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	24	269	0	ENST00000274335.5:c.1745+1del		p.X582_splice	ENST00000274335		582							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0002154-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	389	341	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002154-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	140	265	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55143638	55143638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002154-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			922	97	299	0	ENST00000257290.5:c.1870G>T	p.Val624Phe	p.V624F	ENST00000257290	NM_006206.4	624	Gtt/Ttt						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	29041214	29041214	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002154-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1339	620	401	1	ENST00000282397.4:c.214G>T	p.Glu72Ter	p.E72*	ENST00000282397	NM_002019.4	72	Gaa/Taa						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76937425	76937425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002154-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1279	189	419	0	ENST00000373344.5:c.3323C>T	p.Ser1108Leu	p.S1108L	ENST00000373344	NM_000489.3	1108	tCa/tTa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116525	112116526	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0002154-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			789	164	297	0	ENST00000257430.4:c.572_573del	p.Tyr191Ter	p.Y191*	ENST00000257430	NM_000038.5	190	gaATat/gaat						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16089935	16089935	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001175-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			79	42	379	0	ENST00000268712.3:c.175C>T	p.Gln59Ter	p.Q59*	ENST00000268712	NM_006311.3	59	Caa/Taa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0003902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	60	377	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76776918	76776918	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	28	513	0	ENST00000373344.5:c.7034T>C	p.Val2345Ala	p.V2345A	ENST00000373344	NM_000489.3	2345	gTg/gCg						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47164342	47164342	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0004069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	33	311	0	ENST00000409792.3:c.1784C>G	p.Ser595Ter	p.S595*	ENST00000409792	NM_014159.6	595	tCa/tGa						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50358698	50358698	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0004069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	29	134	0	ENST00000331340.3:c.40+1G>T		p.X14_splice	ENST00000331340	NM_006060.4	14							NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64575420	64575420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	79	316	0	ENST00000337652.1:c.612C>A	p.His204Gln	p.H204Q	ENST00000337652	NM_130803.2	204	caC/caA						NEWRECORD																																																																									
MAPK3	5595	MSKCC	GRCh37	16	30133308	30133308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	73	427	1	ENST00000263025.4:c.190C>T	p.Arg64Cys	p.R64C	ENST00000263025	NM_002746.2	64	Cgc/Tgc						NEWRECORD																																																																									
DAXX	1616	MSKCC	GRCh37	6	33288690	33288690	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	36	209	0	ENST00000374542.5:c.862del	p.Asp288MetfsTer6	p.D288Mfs*6	ENST00000374542	NM_001141970.1	288	Gat/at						NEWRECORD																																																																									
PLK2	10769	MSKCC	GRCh37	5	57754349	57754349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	51	212	0	ENST00000274289.3:c.502del	p.Ala168LeufsTer4	p.A168Lfs*4	ENST00000274289	NM_006622.3	168	Gct/ct						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140481433	140481433	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000219-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			918	116	584	2	ENST00000288602.6:c.1375G>T	p.Val459Leu	p.V459L	ENST00000288602	NM_004333.4	459	Gtg/Ttg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000219-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			945	80	675	0	ENST00000342988.3:c.1055G>A	p.Gly352Glu	p.G352E	ENST00000342988	NM_005359.5	352	gGa/gAa						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53226187	53226187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000219-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			962	79	653	1	ENST00000375401.3:c.2662C>T	p.Arg888Cys	p.R888C	ENST00000375401	NM_004187.3	888	Cgt/Tgt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0000219-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			890	91	525	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0000783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			467	474	362	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112177930	112177930	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35540155		P-0000783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			260	164	318	0	ENST00000257430.4:c.6639G>A	p.Met2213Ile	p.M2213I	ENST00000257430	NM_000038.5	2213	atG/atA						NEWRECORD																																																																									
EED	8726	MSKCC	GRCh37	11	85977219	85977219	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	210	292	0	ENST00000263360.6:c.821T>C	p.Ile274Thr	p.I274T	ENST00000263360	NM_003797.3	274	aTt/aCt						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70117888	70117888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			136	68	223	0	ENST00000245479.2:c.356C>A	p.Ala119Glu	p.A119E	ENST00000245479	NM_000346.3	119	gCg/gAg						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32914954	32914955	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs80359597		P-0000783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			333	160	310	0	ENST00000380152.3:c.6468_6469delTC	p.Gln2157IlefsTer18	p.Q2157Ifs*18	ENST00000380152		2154	taTCtc/tatc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			787	347	254	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49445028	49445028	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs75226229		P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	103	142	1	ENST00000301067.7:c.2438C>T	p.Pro813Leu	p.P813L	ENST00000301067	NM_003482.3	813	cCg/cTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			649	380	227	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198257132	198257132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			450	163	426	0	ENST00000335508.6:c.3810C>A	p.Asn1270Lys	p.N1270K	ENST00000335508	NM_012433.2	1270	aaC/aaA						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89521706	89521706	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			228	282	350	0	ENST00000336596.2:c.2783G>C	p.Cys928Ser	p.C928S	ENST00000336596	NM_005233.5	928	tGc/tCc						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50468194	50468194	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			625	351	323	2	ENST00000331340.3:c.1429T>A	p.Tyr477Asn	p.Y477N	ENST00000331340	NM_006060.4	477	Tac/Aac						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508683	106508683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			767	262	360	0	ENST00000359195.3:c.677G>T	p.Arg226Leu	p.R226L	ENST00000359195	NM_002649.2	226	cGc/cTc						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55371963	55371963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			469	107	150	0	ENST00000297316.4:c.653C>A	p.Pro218Gln	p.P218Q	ENST00000297316	NM_022454.3	218	cCg/cAg						NEWRECORD																																																																									
MRE11A	4361	MSKCC	GRCh37	11	94211901	94211901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			525	120	384	0	ENST00000323929.3:c.544G>A	p.Gly182Arg	p.G182R	ENST00000323929	NM_005591.3	182	Gga/Aga						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32929185	32929185	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			681	277	469	0	ENST00000380152.3:c.7195A>T	p.Thr2399Ser	p.T2399S	ENST00000380152		2399	Aca/Tca						NEWRECORD																																																																									
NKX2-1	7080	MSKCC	GRCh37	14	36987078	36987078	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			3599	287	269	0	ENST00000354822.5:c.611A>G	p.Tyr204Cys	p.Y204C	ENST00000354822	NM_001079668.2	204	tAc/tGc						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2115571	2115571	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			856	88	377	0	ENST00000219476.3:c.1651G>T	p.Ala551Ser	p.A551S	ENST00000219476	NM_000548.3	551	Gcc/Tcc						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602760	10602760	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			389	462	368	0	ENST00000171111.5:c.818G>C	p.Cys273Ser	p.C273S	ENST00000171111	NM_203500.1	273	tGc/tCc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40735447	40735447	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			563	452	378	0	ENST00000373198.4:c.3426G>T	p.Arg1142Ser	p.R1142S	ENST00000373198	NM_133170.3	1142	agG/agT						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484596	57484596	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	301	248	0	ENST00000371085.3:c.680A>T	p.Gln227Leu	p.Q227L	ENST00000371085	NM_000516.4	227	cAg/cTg						NEWRECORD																																																																									
ERG	2078	MSKCC	GRCh37	21	39817344	39817344	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			787	193	403	0	ENST00000288319.7:c.219C>A	p.Ser73Arg	p.S73R	ENST00000288319	NM_182918.3	73	agC/agA						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66942725	66942725	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			141	163	235	0	ENST00000374690.3:c.2506A>G	p.Ile836Val	p.I836V	ENST00000374690	NM_000044.3	836	Atc/Gtc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151859633	151859634	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			636	253	357	0	ENST00000262189.6:c.11028_11029del	p.Cys3677TyrfsTer10	p.C3677Yfs*10	ENST00000262189	NM_170606.2	3676	ctATgt/ctgt						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66535352	66535352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000119-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			272	146	442	0	ENST00000273854.3:c.109C>T	p.Arg37Trp	p.R37W	ENST00000273854	NM_004439.5	37	Cgg/Tgg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174580	112174580	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000119-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			423	214	357	0	ENST00000257430.4:c.3289G>T	p.Glu1097Ter	p.E1097*	ENST00000257430	NM_000038.5	1097	Gaa/Taa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151877909	151877909	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000119-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	149	226	0	ENST00000262189.6:c.7036G>C	p.Gly2346Arg	p.G2346R	ENST00000262189	NM_170606.2	2346	Ggc/Cgc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0000119-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	250	315	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca						NEWRECORD																																																																									
HNF1A	6927	MSKCC	GRCh37	12	121438948	121438948	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146855738		P-0000119-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			431	38	477	2	ENST00000257555.6:c.1849G>A	p.Val617Ile	p.V617I	ENST00000257555		617	Gtc/Atc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575078	48575078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000119-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			231	275	359	0	ENST00000342988.3:c.272C>T	p.Pro91Leu	p.P91L	ENST00000342988	NM_005359.5	91	cCt/cTt						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123195164	123195164	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000119-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			969	287	435	0	ENST00000218089.9:c.1507C>G	p.Leu503Val	p.L503V	ENST00000218089	NM_001042749.1	503	Ctg/Gtg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916947	178916952	+	inframe_deletion	In_Frame_Del	DEL	ATCCTC	ATCCTC	-			P-0000119-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	142	286	0	ENST00000263967.3:c.335_340delTCCTCA	p.Ile112_Leu113del	p.I112_L113del	ENST00000263967	NM_006218.2	112	ATCCTC/-						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175603	112175604	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	T			P-0000119-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			486	210	379	0	ENST00000257430.4:c.4312_4313delACinsT	p.Thr1438TyrfsTer35	p.T1438Yfs*35	ENST00000257430	NM_000038.5	1438	ACa/Ta						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185167709	185167709	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001010-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			253	76	617	2	ENST00000265026.3:c.1032G>A	p.Trp344Ter	p.W344*	ENST00000265026	NM_004721.4	344	tgG/tgA						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27087944	27087944	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000120-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			229	87	293	0	ENST00000324856.7:c.2231C>G	p.Ser744Ter	p.S744*	ENST00000324856	NM_006015.4	744	tCa/tGa						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25991610	25991610	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0000120-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			181	12	228	0	ENST00000435504.4:c.631+1G>C		p.X211_splice	ENST00000435504		211							NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180046310	180046310	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000120-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			166	10	284	0	ENST00000261937.6:c.2704C>A	p.His902Asn	p.H902N	ENST00000261937	NM_182925.4	902	Cac/Aac						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37686863	37686863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000120-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	157	311	0	ENST00000447079.4:c.3767C>T	p.Pro1256Leu	p.P1256L	ENST00000447079	NM_015083.1	1256	cCt/cTt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000120-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			308	8	336	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg						NEWRECORD																																																																									
TMPRSS2	7113	MSKCC	GRCh37	21	42866328	42866328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150389990		P-0000120-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			146	87	197	0	ENST00000398585.3:c.304G>A	p.Val102Ile	p.V102I	ENST00000398585	NM_001135099.1	102	Gtc/Atc						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36259161	36259161	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	351	399	0	ENST00000300305.3:c.330G>T	p.Lys110Asn	p.K110N	ENST00000300305		110	aaG/aaT						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151859560	151859578	+	frameshift_variant	Frame_Shift_Del	DEL	TTTGCATACGTCTGTTGAT	TTTGCATACGTCTGTTGAT	-			P-0004181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			66	328	426	0	ENST00000262189.6:c.11084_11102del	p.Asn3695IlefsTer4	p.N3695Ifs*4	ENST00000262189	NM_170606.2	3695	aATCAACAGACGTATGCAAAt/at						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578521	7578531	+	frameshift_variant	Frame_Shift_Del	DEL	GTTGGCAAAAC	GTTGGCAAAAC	-			P-0004181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			41	269	318	0	ENST00000269305.4:c.399_409del	p.Met133IlefsTer12	p.M133Ifs*12	ENST00000269305	NM_001126112.2	133	atGTTTTGCCAACtg/attg						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68845699	68845699	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			67	454	481	0	ENST00000261769.5:c.945del	p.Asn315LysfsTer41	p.N315Kfs*41	ENST00000261769	NM_004360.3	315	aaT/aa						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16255106	16255107	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0004181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	813	352	0	ENST00000375759.3:c.2372_2373del	p.Thr791ArgfsTer2	p.T791Rfs*2	ENST00000375759	NM_015001.2	791	ACa/a						NEWRECORD																																																																									
JUN	3725	MSKCC	GRCh37	1	59248633	59248634	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0004181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	430	509	0	ENST00000371222.2:c.109_110delAG	p.Ser37HisfsTer69	p.S37Hfs*69	ENST00000371222	NM_002228.3	37	AGc/c						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0000858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			411	82	209	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64575023	64575023	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0001509-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			80	237	215	1	ENST00000337652.1:c.798+1G>T		p.X266_splice	ENST00000337652	NM_130803.2	266							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002663-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			261	61	215	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0002663-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			435	153	320	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47164268	47164268	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002663-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	76	309	0	ENST00000409792.3:c.1858C>T	p.Arg620Ter	p.R620*	ENST00000409792	NM_014159.6	620	Cga/Tga						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73355867	73355867	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002663-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	59	228	0	ENST00000377767.4:c.104G>C	p.Gly35Ala	p.G35A	ENST00000377767	NM_014953.3	35	gGg/gCg						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47677834	47677834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002663-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			580	77	266	0	ENST00000347630.2:c.1031C>T	p.Ser344Leu	p.S344L	ENST00000347630	NM_001007230.1	344	tCa/tTa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023553	27023557	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCC	GCGCC	-			P-0002663-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			370	92	225	0	ENST00000324856.7:c.659_663del	p.Ser220IlefsTer178	p.S220Ifs*178	ENST00000324856	NM_006015.4	220	aGCGCC/a						NEWRECORD																																																																									
VHL	7428	MSKCC	GRCh37	3	10183640	10183654	+	inframe_deletion	In_Frame_Del	DEL	GAGTCCGGCCCGGAA	GAGTCCGGCCCGGAA	-			P-0002663-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			468	58	305	0	ENST00000256474.2:c.123_137del	p.Ser43_Glu47del	p.S43_E47del	ENST00000256474	NM_000551.3	37	GAGTCCGGCCCGGAA/-						NEWRECORD																																																																									
MYCL1	4610	MSKCC	GRCh37	1	40367069	40367069	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001150-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			734	397	653	0	ENST00000397332.2:c.128A>G	p.Tyr43Cys	p.Y43C	ENST00000397332	NM_001033082.2	43	tAt/tGt						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215645889	215645889	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001150-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1281	394	853	1	ENST00000260947.4:c.709C>T	p.Gln237Ter	p.Q237*	ENST00000260947	NM_000465.2	237	Caa/Taa						NEWRECORD																																																																									
MITF	4286	MSKCC	GRCh37	3	69788753	69788753	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001150-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			164	441	369	0	ENST00000352241.4:c.5A>C	p.Gln2Pro	p.Q2P	ENST00000352241	NM_198159.2	2	cAg/cCg						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150005365	150005365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001150-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			582	343	550	2	ENST00000253339.5:c.860G>A	p.Arg287Gln	p.R287Q	ENST00000253339		287	cGa/cAa						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0001150-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			488	575	405	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001150-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			109	193	340	0	ENST00000269305.4:c.481G>T	p.Ala161Ser	p.A161S	ENST00000269305	NM_001126112.2	161	Gcc/Tcc						NEWRECORD																																																																									
FLCN	201163	MSKCC	GRCh37	17	17129563	17129563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001150-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			281	350	595	0	ENST00000285071.4:c.323G>T	p.Ser108Ile	p.S108I	ENST00000285071	NM_144997.5	108	aGc/aTc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173669	112173670	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0001150-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	219	342	0	ENST00000257430.4:c.2379_2380del	p.Tyr796TrpfsTer2	p.Y796Wfs*2	ENST00000257430	NM_000038.5	793	cAA/c						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175752	112175755	+	frameshift_variant	Frame_Shift_Del	DEL	TTTA	TTTA	-			P-0001150-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			390	163	280	0	ENST00000257430.4:c.4463_4466del	p.Leu1488TyrfsTer18	p.L1488Yfs*18	ENST00000257430	NM_000038.5	1487	acTTTA/ac						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002990-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			553	201	527	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49421807	49421808	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0002990-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			637	235	652	0	ENST00000301067.7:c.14499_14500delGG	p.Glu4834SerfsTer2	p.E4834Sfs*2	ENST00000301067	NM_003482.3	4833	ggGGaa/ggaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0000874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			47	282	411	0	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0000874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	239	278	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0003348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	38	309	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	21	272	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106661	27106661	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	49	314	0	ENST00000324856.7:c.6272G>A	p.Trp2091Ter	p.W2091*	ENST00000324856	NM_006015.4	2091	tGg/tAg						NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48028106	48028106	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	26	317	0	ENST00000234420.5:c.2984A>C	p.Glu995Ala	p.E995A	ENST00000234420	NM_000179.2	995	gAg/gCg						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32163764	32163764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	68	225	0	ENST00000375023.3:c.5462G>T	p.Gly1821Val	p.G1821V	ENST00000375023	NM_004557.3	1821	gGg/gTg						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118377160	118377160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	50	420	1	ENST00000534358.1:c.10553C>T	p.Ser3518Phe	p.S3518F	ENST00000534358	NM_005933.3	3518	tCt/tTt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0004673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	56	533	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212578294	212578294	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	55	676	0	ENST00000342788.4:c.963A>C	p.Lys321Asn	p.K321N	ENST00000342788	NM_005235.2	321	aaA/aaC						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	21	534	1	ENST00000342988.3:c.1082G>T	p.Arg361Leu	p.R361L	ENST00000342988	NM_005359.5	361	cGc/cTc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001559-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	58	187	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
MDM2	4193	MSKCC	GRCh37	12	69229651	69229651	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001559-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1004	108	284	0	ENST00000462284.1:c.727G>C	p.Asp243His	p.D243H	ENST00000462284	NM_002392.5	243	Gat/Cat						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	150	613	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			172	19	278	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
PDCD1	5133	MSKCC	GRCh37	2	242794106	242794106	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs148456597		P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	55	562	0	ENST00000334409.5:c.622C>A	p.Pro208Thr	p.P208T	ENST00000334409	NM_005018.2	208	Ccc/Acc						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55129962	55129962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			492	51	613	0	ENST00000257290.5:c.496G>T	p.Gly166Trp	p.G166W	ENST00000257290	NM_006206.4	166	Ggg/Tgg						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187525547	187525547	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			489	34	633	0	ENST00000441802.2:c.10532A>C	p.Tyr3511Ser	p.Y3511S	ENST00000441802	NM_005245.3	3511	tAc/tCc						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149499592	149499592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			464	58	528	0	ENST00000261799.4:c.2681G>T	p.Trp894Leu	p.W894L	ENST00000261799	NM_002609.3	894	tGg/tTg						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149504352	149504352	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			461	65	429	0	ENST00000261799.4:c.1850C>A	p.Ala617Asp	p.A617D	ENST00000261799	NM_002609.3	617	gCc/gAc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151878816	151878816	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			531	39	483	0	ENST00000262189.6:c.6129T>A	p.Phe2043Leu	p.F2043L	ENST00000262189	NM_170606.2	2043	ttT/ttA						NEWRECORD																																																																									
MRE11A	4361	MSKCC	GRCh37	11	94194204	94194204	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			264	38	571	0	ENST00000323929.3:c.1226-2A>G		p.X409_splice	ENST00000323929	NM_005591.3	409							NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133249302	133249302	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	109	559	0	ENST00000320574.5:c.1597G>T	p.Val533Leu	p.V533L	ENST00000320574	NM_006231.2	533	Gtg/Ttg						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88472524	88472524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	54	556	1	ENST00000360948.2:c.2031C>A	p.His677Gln	p.H677Q	ENST00000360948	NM_001012338.2	677	caC/caA						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23647209	23647209	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			434	55	688	0	ENST00000261584.4:c.658A>T	p.Ser220Cys	p.S220C	ENST00000261584	NM_024675.3	220	Agt/Tgt						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41385108	41385108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			413	39	507	0	ENST00000373198.4:c.853G>T	p.Val285Leu	p.V285L	ENST00000373198	NM_133170.3	285	Gtg/Ttg						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76777741	76777741	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	54	666	0	ENST00000373344.5:c.6975G>T	p.Glu2325Asp	p.E2325D	ENST00000373344	NM_000489.3	2325	gaG/gaT						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000057-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			389	132	142	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215593578	215593578	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000057-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			553	217	302	0	ENST00000260947.4:c.2156C>G	p.Thr719Arg	p.T719R	ENST00000260947	NM_000465.2	719	aCa/aGa						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185198238	185198238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000057-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			461	262	282	0	ENST00000265026.3:c.2720C>T	p.Ser907Phe	p.S907F	ENST00000265026	NM_004721.4	907	tCt/tTt						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32172007	32172007	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000057-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			411	164	287	0	ENST00000375023.3:c.3025G>C	p.Glu1009Gln	p.E1009Q	ENST00000375023	NM_004557.3	1009	Gag/Cag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0000057-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	261	511	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76874314	76874314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002619-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			253	90	411	0	ENST00000373344.5:c.5408G>A	p.Arg1803His	p.R1803H	ENST00000373344	NM_000489.3	1803	cGt/cAt						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68772294	68772303	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGCCGCGT	GAGGCCGCGT	-			P-0002619-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			122	32	426	0	ENST00000261769.5:c.143_152del	p.Arg48ThrfsTer5	p.R48Tfs*5	ENST00000261769	NM_004360.3	48	aGAGGCCGCGTc/ac						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	152055696	152055696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	12	568	0	ENST00000262189.6:c.226G>A	p.Glu76Lys	p.E76K	ENST00000262189	NM_170606.2	76	Gaa/Aaa						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15974926	15974926	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	10	472	0	ENST00000268712.3:c.3949C>A	p.Gln1317Lys	p.Q1317K	ENST00000268712	NM_006311.3	1317	Caa/Aaa						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123195680	123195680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	17	285	0	ENST00000218089.9:c.1594G>T	p.Ala532Ser	p.A532S	ENST00000218089	NM_001042749.1	532	Gcg/Tcg						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061220	38061225	+	inframe_deletion	In_Frame_Del	DEL	CGTTCT	CGTTCT	-			P-0004522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	195	309	0	ENST00000250448.2:c.764_769del	p.Glu255_Asn256del	p.E255_N256del	ENST00000250448	NM_004496.3	255	gAGAACGgc/ggc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27089737	27089737	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			67	22	243	0	ENST00000324856.7:c.2693del	p.Ala898ValfsTer21	p.A898Vfs*21	ENST00000324856	NM_006015.4	898	gCt/gt						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88726685	88726685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			150	219	475	0	ENST00000360948.2:c.359C>A	p.Pro120His	p.P120H	ENST00000360948	NM_001012338.2	120	cCc/cAc						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162740138	162740138	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	478	542	0	ENST00000367921.3:c.1340T>A	p.Leu447Gln	p.L447Q	ENST00000367921	NM_006182.2	447	cTg/cAg						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198281472	198281472	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			127	78	436	0	ENST00000335508.6:c.659A>G	p.Gln220Arg	p.Q220R	ENST00000335508	NM_012433.2	220	cAg/cGg						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89156936	89156936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			219	85	636	0	ENST00000336596.2:c.38G>A	p.Cys13Tyr	p.C13Y	ENST00000336596	NM_005233.5	13	tGc/tAc						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89521679	89521679	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	74	483	0	ENST00000336596.2:c.2756G>T	p.Trp919Leu	p.W919L	ENST00000336596	NM_005233.5	919	tGg/tTg						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142188394	142188394	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			77	155	319	0	ENST00000350721.4:c.6337G>C	p.Val2113Leu	p.V2113L	ENST00000350721	NM_001184.3	2113	Gta/Cta						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55964325	55964325	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			571	173	609	0	ENST00000263923.4:c.2488C>A	p.Pro830Thr	p.P830T	ENST00000263923	NM_002253.2	830	Ccc/Acc						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153244249	153244249	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	83	420	0	ENST00000281708.4:c.1908T>A	p.Phe636Leu	p.F636L	ENST00000281708	NM_033632.3	636	ttT/ttA						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187630759	187630759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	129	708	0	ENST00000441802.2:c.223G>T	p.Val75Phe	p.V75F	ENST00000441802	NM_005245.3	75	Gtt/Ttt						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176665415	176665415	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			281	208	467	1	ENST00000439151.2:c.4099G>C	p.Glu1367Gln	p.E1367Q	ENST00000439151	NM_022455.4	1367	Gag/Cag						NEWRECORD																																																																									
IRF4	3662	MSKCC	GRCh37	6	394949	394949	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			198	115	329	0	ENST00000380956.4:c.345G>T	p.Gln115His	p.Q115H	ENST00000380956	NM_001195286.1	115	caG/caT						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157469985	157469985	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			105	87	358	0	ENST00000346085.5:c.2779G>T	p.Gly927Ter	p.G927*	ENST00000346085	NM_020732.3	927	Gga/Tga						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29560109	29560109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			287	113	465	0	ENST00000358273.4:c.3586C>T	p.Leu1196Phe	p.L1196F	ENST00000358273	NM_001042492.2	1196	Ctt/Ttt						NEWRECORD																																																																									
RPTOR	57521	MSKCC	GRCh37	17	78820303	78820303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	98	500	0	ENST00000306801.3:c.1243G>A	p.Ala415Thr	p.A415T	ENST00000306801	NM_020761.2	415	Gca/Aca						NEWRECORD																																																																									
BCL2	596	MSKCC	GRCh37	18	60795890	60795890	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	189	481	0	ENST00000333681.4:c.688A>G	p.Ile230Val	p.I230V	ENST00000333681		230	Atc/Gtc						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17954635	17954635	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	160	456	0	ENST00000458235.1:c.259A>G	p.Ile87Val	p.I87V	ENST00000458235	NM_000215.3	87	Atc/Gtc						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31380513	31380513	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	184	542	0	ENST00000328111.2:c.1003T>A	p.Trp335Arg	p.W335R	ENST00000328111	NM_006892.3	335	Tgg/Agg						NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100615113	100615113	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	128	664	0	ENST00000308731.7:c.802T>A	p.Tyr268Asn	p.Y268N	ENST00000308731	NM_000061.2	268	Tat/Aat						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			134	179	388	0	ENST00000269305.4:c.461delG	p.Gly154AlafsTer16	p.G154Afs*16	ENST00000269305	NM_001126112.2	154	gGc/gc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41101030	41101030	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	191	458	0	ENST00000373198.4:c.1326del	p.Thr443ProfsTer14	p.T443Pfs*14	ENST00000373198	NM_133170.3	442	caG/ca						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89468490	89468490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000600-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			856	116	235	0	ENST00000336596.2:c.2024G>T	p.Gly675Val	p.G675V	ENST00000336596	NM_005233.5	675	gGa/gTa						NEWRECORD																																																																									
CCND1	595	MSKCC	GRCh37	11	69462780	69462780	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000600-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	257	325	0	ENST00000227507.2:c.593A>G	p.Asn198Ser	p.N198S	ENST00000227507	NM_053056.2	198	aAt/aGt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	152	221	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
PIK3CD	5293	MSKCC	GRCh37	1	9776125	9776125	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	32	109	0	ENST00000377346.4:c.589G>C	p.Glu197Gln	p.E197Q	ENST00000377346	NM_005026.3	197	Gag/Cag						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32899248	32899248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	92	266	0	ENST00000380152.3:c.352C>T	p.Arg118Cys	p.R118C	ENST00000380152		118	Cgc/Tgc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0001828-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			595	277	594	3	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001828-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			208	70	403	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65335021	65335021	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001828-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			501	136	568	0	ENST00000342505.4:c.620A>T	p.Gln207Leu	p.Q207L	ENST00000342505	NM_002227.2	207	cAg/cTg						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135786479	135786479	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001828-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	119	514	0	ENST00000298552.3:c.1051A>G	p.Met351Val	p.M351V	ENST00000298552	NM_001162426.1	351	Atg/Gtg						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88679723	88679723	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001828-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			232	71	573	0	ENST00000360948.2:c.740G>C	p.Gly247Ala	p.G247A	ENST00000360948	NM_001012338.2	247	gGg/gCg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578400	7578400	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs751477326		P-0001828-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			238	45	397	0	ENST00000269305.4:c.530C>G	p.Pro177Arg	p.P177R	ENST00000269305	NM_001126112.2	177	cCc/cGc						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53226008	53226008	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001828-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	79	681	1	ENST00000375401.3:c.2841G>T	p.Leu947Phe	p.L947F	ENST00000375401	NM_004187.3	947	ttG/ttT						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123185204	123185204	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001828-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			749	156	693	2	ENST00000218089.9:c.1156G>T	p.Val386Phe	p.V386F	ENST00000218089	NM_001042749.1	386	Gtt/Ttt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0002778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			153	318	513	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	406	398	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106157792	106157792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			618	99	388	1	ENST00000380013.4:c.2693G>A	p.Gly898Glu	p.G898E	ENST00000380013	NM_001127208.2	898	gGa/gAa						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36171760	36171760	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0002778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	186	300	0	ENST00000300305.3:c.806-1G>C		p.X269_splice	ENST00000300305		269							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			377	110	520	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106520088	106520088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	34	273	0	ENST00000359195.3:c.2516G>T	p.Arg839Leu	p.R839L	ENST00000359195	NM_002649.2	839	cGc/cTc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8319844	8319844	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			297	81	591	0	ENST00000356435.5:c.5657T>C	p.Met1886Thr	p.M1886T	ENST00000356435		1886	aTg/aCg						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133242014	133242014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			260	70	351	1	ENST00000320574.5:c.2342C>T	p.Ala781Val	p.A781V	ENST00000320574	NM_006231.2	781	gCg/gTg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220715	1220715	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			207	75	398	0	ENST00000326873.7:c.733C>T	p.Leu245Phe	p.L245F	ENST00000326873	NM_000455.4	245	Ctc/Ttc						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602572	10602572	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			194	51	405	0	ENST00000171111.5:c.1006C>T	p.Arg336Ter	p.R336*	ENST00000171111	NM_203500.1	336	Cga/Tga						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11129700	11129700	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0000989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	66	444	0	ENST00000344626.4:c.2505+1G>T		p.X835_splice	ENST00000344626	NM_003072.3	835							NEWRECORD																																																																									
ERG	2078	MSKCC	GRCh37	21	39795353	39795353	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs187337793		P-0000989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			312	72	562	0	ENST00000288319.7:c.367C>T	p.Arg123Cys	p.R123C	ENST00000288319	NM_182918.3	123	Cgc/Tgc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001346-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	220	371	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001346-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	199	302	1	ENST00000269305.4:c.434T>C	p.Leu145Pro	p.L145P	ENST00000269305	NM_001126112.2	145	cTg/cCg						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11143984	11143984	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001346-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	157	198	0	ENST00000344626.4:c.3565C>T	p.Arg1189Ter	p.R1189*	ENST00000344626	NM_003072.3	1189	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175908	112175917	+	frameshift_variant	Frame_Shift_Del	DEL	AGAGCAGCCT	AGAGCAGCCT	-			P-0001346-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	164	174	0	ENST00000257430.4:c.4618_4627del	p.Glu1540LysfsTer22	p.E1540Kfs*22	ENST00000257430	NM_000038.5	1539	tcAGAGCAGCCT/tc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	100	393	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0004441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	123	464	0	ENST00000288602.6:c.1742A>T	p.Asn581Ile	p.N581I	ENST00000288602	NM_004333.4	581	aAt/aTt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175136	112175136	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	104	447	0	ENST00000257430.4:c.3845C>A	p.Ser1282Ter	p.S1282*	ENST00000257430	NM_000038.5	1282	tCa/tAa						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149441393	149441393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	33	663	1	ENST00000286301.3:c.1646G>A	p.Arg549His	p.R549H	ENST00000286301	NM_005211.3	549	cGc/cAc						NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103524624	103524624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1288	189	941	2	ENST00000355739.4:c.2755C>T	p.Arg919Trp	p.R919W	ENST00000355739	NM_000123.3	919	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578371	7578371	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0004441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	105	500	1	ENST00000269305.4:c.559G>C	p.Gly187Arg	p.G187R	ENST00000269305	NM_001126112.2	187	Ggt/Cgt						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5214729	5214729	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	140	667	0	ENST00000357368.4:c.4337A>G	p.Tyr1446Cys	p.Y1446C	ENST00000357368	NM_002850.3	1446	tAc/tGc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48603039	48603066	+	frameshift_variant	Frame_Shift_Del	DEL	TGCAGCAGCAGGCGGCTACTGCACAAGC	TGCAGCAGCAGGCGGCTACTGCACAAGC	-			P-0004441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	135	478	0	ENST00000342988.3:c.1349_1376del	p.Gln450LeufsTer17	p.Q450Lfs*17	ENST00000342988	NM_005359.5	447	aTGCAGCAGCAGGCGGCTACTGCACAAGCt/at						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0001771-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			104	44	378	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
JUN	3725	MSKCC	GRCh37	1	59248385	59248385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001771-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			209	35	185	0	ENST00000371222.2:c.358G>A	p.Glu120Lys	p.E120K	ENST00000371222	NM_002228.3	120	Gaa/Aaa						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133237689	133237689	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060500820		P-0001771-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			172	48	462	0	ENST00000320574.5:c.2926C>T	p.Arg976Cys	p.R976C	ENST00000320574	NM_006231.2	976	Cgc/Tgc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0001771-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			60	12	286	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag						NEWRECORD																																																																									
FUBP1	8880	MSKCC	GRCh37	1	78426054	78426067	+	frameshift_variant	Frame_Shift_Del	DEL	GATTATAAGGTGCA	GATTATAAGGTGCA	-			P-0003446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	39	378	0	ENST00000370768.2:c.1458_1471del	p.Ala487TrpfsTer33	p.A487Wfs*33	ENST00000370768	NM_003902.3	486	ccTGCACCTTATAATCct/ccct						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67569808	67569808	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002296-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			837	100	306	0	ENST00000274335.5:c.469A>C	p.Asn157His	p.N157H	ENST00000274335		157	Aac/Cac						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50468308	50468308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002296-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	342	227	0	ENST00000331340.3:c.1543C>T	p.Arg515Cys	p.R515C	ENST00000331340	NM_006060.4	515	Cgc/Tgc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242509	55242509	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002296-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			837	80	270	0	ENST00000275493.2:c.2279T>C	p.Leu760Pro	p.L760P	ENST00000275493	NM_005228.3	760	cTc/cCc						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128850907	128850907	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002296-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			586	226	395	1	ENST00000249373.3:c.1754A>C	p.Gln585Pro	p.Q585P	ENST00000249373	NM_005631.4	585	cAg/cCg						NEWRECORD																																																																									
FGFR1	2260	MSKCC	GRCh37	8	38275815	38275815	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002296-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			635	281	364	1	ENST00000425967.3:c.1454C>A	p.Thr485Asn	p.T485N	ENST00000425967	NM_001174067.1	485	aCt/aAt						NEWRECORD																																																																									
YAP1	10413	MSKCC	GRCh37	11	102094434	102094434	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002296-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			770	298	448	0	ENST00000282441.5:c.1114C>T	p.Gln372Ter	p.Q372*	ENST00000282441	NM_001130145.2	372	Cag/Tag						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118392119	118392129	+	frameshift_variant	Frame_Shift_Del	DEL	ATTACGACAGC	ATTACGACAGC	-			P-0002296-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			708	194	267	0	ENST00000534358.1:c.11631_11641delTTACGACAGCA	p.Tyr3877Ter	p.Y3877*	ENST00000534358	NM_005933.3	3877	tATTACGACAGC/t						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48955475	48955541	+	frameshift_variant	Frame_Shift_Del	DEL	GTGATCGAAAGTTTTATCAAAGCAGAAGGCAACTTGACAAGAGAAATGATAAAACATTTAGAACGAT	GTGATCGAAAGTTTTATCAAAGCAGAAGGCAACTTGACAAGAGAAATGATAAAACATTTAGAACGAT	-			P-0002296-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			522	206	445	0	ENST00000267163.4:c.1595_1661del	p.Ile532AsnfsTer57	p.I532Nfs*57	ENST00000267163	NM_000321.2	531	GTGATCGAAAGTTTTATCAAAGCAGAAGGCAACTTGACAAGAGAAATGATAAAACATTTAGAACGATgt/gt						NEWRECORD																																																																									
FH	2271	MSKCC	GRCh37	1	241676926	241676926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002999-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	173	532	1	ENST00000366560.3:c.355G>A	p.Ala119Thr	p.A119T	ENST00000366560	NM_000143.3	119	Gca/Aca						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176673736	176673736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002999-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			315	176	520	2	ENST00000439151.2:c.4436C>T	p.Ala1479Val	p.A1479V	ENST00000439151	NM_022455.4	1479	gCc/gTc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55221711	55221711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002999-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			601	14	435	0	ENST00000275493.2:c.755G>A	p.Arg252His	p.R252H	ENST00000275493	NM_005228.3	252	cGc/cAc						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	29004241	29004241	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772440220		P-0002999-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			431	126	606	0	ENST00000282397.4:c.1052G>A	p.Arg351Gln	p.R351Q	ENST00000282397	NM_002019.4	351	cGg/cAg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002565-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	111	542	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0002565-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			614	249	415	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89391214	89391214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002565-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	48	243	0	ENST00000336596.2:c.1280C>T	p.Ala427Val	p.A427V	ENST00000336596	NM_005233.5	427	gCg/gTg						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43607555	43607555	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201553718		P-0002565-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			543	102	326	0	ENST00000355710.3:c.1531G>A	p.Glu511Lys	p.E511K	ENST00000355710	NM_020975.4	511	Gag/Aag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002565-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			383	95	478	0	ENST00000257430.4:c.4364delA	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	450	330	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0003527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	109	245	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578520	7578520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	145	253	0	ENST00000269305.4:c.410T>A	p.Leu137Gln	p.L137Q	ENST00000269305	NM_001126112.2	137	cTg/cAg						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243668598	243668598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	90	299	0	ENST00000263826.5:c.1393C>T	p.Arg465Trp	p.R465W	ENST00000263826	NM_005465.4	465	Cgg/Tgg						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143159015	143159015	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0003527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	75	250	0	ENST00000262992.4:c.836+2T>C		p.X279_splice	ENST00000262992	NM_001101669.1	279							NEWRECORD																																																																									
PTPN11	5781	MSKCC	GRCh37	12	112919929	112919929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	56	127	0	ENST00000351677.2:c.1144G>A	p.Val382Ile	p.V382I	ENST00000351677	NM_002834.3	382	Gtc/Atc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0001690-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			566	159	402	1	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0001690-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			621	126	405	2	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66535373	66535373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001690-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	79	391	0	ENST00000273854.3:c.88G>A	p.Gly30Ser	p.G30S	ENST00000273854	NM_004439.5	30	Ggc/Agc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001690-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			409	215	400	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149460417	149460417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001690-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			496	106	507	0	ENST00000286301.3:c.220G>A	p.Ala74Thr	p.A74T	ENST00000286301	NM_005211.3	74	Gct/Act						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578188	7578188	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001690-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	307	553	0	ENST00000269305.4:c.661G>T	p.Glu221Ter	p.E221*	ENST00000269305	NM_001126112.2	221	Gag/Tag						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226573330	226573330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001934-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	51	168	0	ENST00000366794.5:c.886G>A	p.Glu296Lys	p.E296K	ENST00000366794	NM_001618.3	296	Gag/Aag						NEWRECORD																																																																									
XPO1	7514	MSKCC	GRCh37	2	61724058	61724058	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001934-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	225	252	0	ENST00000401558.2:c.844C>A	p.Gln282Lys	p.Q282K	ENST00000401558	NM_003400.3	282	Caa/Aaa						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12032474	12032474	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001934-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			121	117	150	0	ENST00000353533.5:c.910C>T	p.Arg304Ter	p.R304*	ENST00000353533	NM_003010.3	304	Cga/Tga						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001934-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			368	54	249	0	ENST00000171111.5:c.959G>A	p.Arg320Gln	p.R320Q	ENST00000171111	NM_203500.1	320	cGg/cAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112176064	112176064	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001934-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	166	218	0	ENST00000257430.4:c.4778del	p.Lys1593SerfsTer57	p.K1593Sfs*57	ENST00000257430	NM_000038.5	1591	gcA/gc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0000911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			214	598	415	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720649	89720649	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0000911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			84	39	60	0	ENST00000371953.3:c.802-2A>T		p.X268_splice	ENST00000371953	NM_000314.4	268							NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212293172	212293172	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	87	310	0	ENST00000342788.4:c.2680T>A	p.Tyr894Asn	p.Y894N	ENST00000342788	NM_005235.2	894	Tac/Aac						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	235	179	0	ENST00000257430.4:c.4037C>G	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tGa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0001909-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			315	174	549	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29519818	29519818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001909-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			581	171	428	1	ENST00000389048.3:c.1753G>A	p.Ala585Thr	p.A585T	ENST00000389048	NM_004304.4	585	Gcc/Acc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0001909-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	145	378	2	ENST00000257430.4:c.4128T>G	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taG						NEWRECORD																																																																									
RPS6KA4	8986	MSKCC	GRCh37	11	64132875	64132875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001909-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			162	650	498	1	ENST00000334205.4:c.1009C>T	p.Arg337Trp	p.R337W	ENST00000334205	NM_003942.2	337	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577497	7577497	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0001909-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			125	167	295	0	ENST00000269305.4:c.782+2T>C		p.X261_splice	ENST00000269305	NM_001126112.2	261							NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48593473	48593473	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001909-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			154	175	454	1	ENST00000342988.3:c.1224T>A	p.Phe408Leu	p.F408L	ENST00000342988	NM_005359.5	408	ttT/ttA						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0003241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	48	108	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89712018	89712018	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0003241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	27	134	0	ENST00000371953.3:c.634+2T>G		p.X212_splice	ENST00000371953	NM_000314.4	212							NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68842680	68842692	+	frameshift_variant	Frame_Shift_Del	DEL	ATTATTGAAAGAG	ATTATTGAAAGAG	GTT			P-0003241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	210	509	0	ENST00000261769.5:c.616_628delinsGTT	p.Ile206ValfsTer6	p.I206Vfs*6	ENST00000261769	NM_004360.3	206	ATTATTGAAAGAGaa/GTTaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0004158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	149	210	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99152641	99152641	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	36	382	0	ENST00000074304.5:c.437A>G	p.Asp146Gly	p.D146G	ENST00000074304	NM_001134224.1	146	gAc/gGc						NEWRECORD																																																																									
ARAF	369	MSKCC	GRCh37	X	47430771	47430771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	99	369	1	ENST00000377045.4:c.1736G>A	p.Arg579Gln	p.R579Q	ENST00000377045	NM_001654.4	579	cGg/cAg						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11288735	11288735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	162	411	3	ENST00000361445.4:c.3020C>A	p.Ala1007Asp	p.A1007D	ENST00000361445	NM_004958.3	1007	gCc/gAc						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156849080	156849080	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			618	228	484	1	ENST00000524377.1:c.1972G>T	p.Val658Leu	p.V658L	ENST00000524377	NM_002529.3	658	Gtg/Ttg						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29519777	29519777	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			602	46	383	0	ENST00000389048.3:c.1794G>T	p.Leu598Phe	p.L598F	ENST00000389048	NM_004304.4	598	ttG/ttT						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142176478	142176478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			755	92	409	2	ENST00000350721.4:c.7623G>T	p.Arg2541Ser	p.R2541S	ENST00000350721	NM_001184.3	2541	agG/agT						NEWRECORD																																																																									
SOX2	6657	MSKCC	GRCh37	3	181430735	181430735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	141	361	5	ENST00000325404.1:c.587C>A	p.Pro196His	p.P196H	ENST00000325404	NM_003106.3	196	cCc/cAc						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32168698	32168698	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			781	136	457	0	ENST00000375023.3:c.4225C>A	p.Leu1409Ile	p.L1409I	ENST00000375023	NM_004557.3	1409	Ctc/Atc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8404570	8404570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			904	227	523	4	ENST00000356435.5:c.4177G>T	p.Asp1393Tyr	p.D1393Y	ENST00000356435		1393	Gat/Tat						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28882979	28882979	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			883	215	494	2	ENST00000282397.4:c.3720+1G>A		p.X1240_splice	ENST00000282397	NM_002019.4	1240							NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061732	38061732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	48	223	0	ENST00000250448.2:c.257C>T	p.Pro86Leu	p.P86L	ENST00000250448	NM_004496.3	86	cCg/cTg						NEWRECORD																																																																									
RPTOR	57521	MSKCC	GRCh37	17	78831617	78831617	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			664	83	383	3	ENST00000306801.3:c.1426G>T	p.Val476Leu	p.V476L	ENST00000306801	NM_020761.2	476	Gtg/Ttg						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10291025	10291025	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			553	71	319	3	ENST00000340748.4:c.445+1G>T		p.X149_splice	ENST00000340748		149							NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600344	10600344	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			688	125	466	3	ENST00000171111.5:c.1511A>G	p.Asn504Ser	p.N504S	ENST00000171111	NM_203500.1	504	aAc/aGc						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17953407	17953407	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			408	138	411	1	ENST00000458235.1:c.579C>A	p.Cys193Ter	p.C193*	ENST00000458235	NM_000215.3	193	tgC/tgA						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9546850	9546850	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			335	60	378	1	ENST00000353224.5:c.1172G>T	p.Ser391Ile	p.S391I	ENST00000353224	NM_177990.2	391	aGt/aTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	155	341	0	ENST00000269305.4:c.731delG	p.Gly244AlafsTer3	p.G244Afs*3	ENST00000269305	NM_001126112.2	244	gGc/gc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001452-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			463	332	231	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118392871	118392871	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001452-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	171	265	0	ENST00000534358.1:c.11903G>T	p.Arg3968Leu	p.R3968L	ENST00000534358	NM_005933.3	3968	cGg/cTg						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9916152	9916152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001452-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			633	138	273	0	ENST00000330684.3:c.2137G>A	p.Val713Ile	p.V713I	ENST00000330684	NM_001134407.1	713	Gta/Ata						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9916166	9916166	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001452-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			640	133	268	0	ENST00000330684.3:c.2123T>A	p.Phe708Tyr	p.F708Y	ENST00000330684	NM_001134407.1	708	tTt/tAt						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9916194	9916194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001452-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			606	131	268	0	ENST00000330684.3:c.2095C>A	p.Pro699Thr	p.P699T	ENST00000330684	NM_001134407.1	699	Ccc/Acc						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266134	41266136	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0001452-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			577	48	200	0	ENST00000349496.5:c.133_135delTCT	p.Ser45del	p.S45del	ENST00000349496	NM_001904.3	44	cCTTct/cct						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0004607-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			381	1950	353	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
NEGR1	257194	MSKCC	GRCh37	1	72400822	72400822	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004607-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			756	134	619	0	ENST00000357731.5:c.349A>G	p.Thr117Ala	p.T117A	ENST00000357731	NM_173808.2	117	Acg/Gcg						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30715721	30715721	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893816		P-0004607-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			232	153	270	1	ENST00000359013.4:c.1454G>A	p.Arg485His	p.R485H	ENST00000359013	NM_001024847.2	485	cGc/cAc						NEWRECORD																																																																									
E2F3	1871	MSKCC	GRCh37	6	20486939	20486939	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004607-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			483	88	395	0	ENST00000346618.3:c.904C>G	p.Gln302Glu	p.Q302E	ENST00000346618	NM_001949.4	302	Caa/Gaa						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99486178	99486178	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004607-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			318	46	306	0	ENST00000268035.6:c.3484G>C	p.Glu1162Gln	p.E1162Q	ENST00000268035	NM_000875.3	1162	Gag/Cag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004607-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			185	112	292	0	ENST00000269305.4:c.712T>C	p.Cys238Arg	p.C238R	ENST00000269305	NM_001126112.2	238	Tgt/Cgt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207118	1207118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004607-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			313	116	362	0	ENST00000326873.7:c.206C>A	p.Ser69Ter	p.S69*	ENST00000326873	NM_000455.4	69	tCg/tAg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1218423	1218423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004607-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			395	48	348	0	ENST00000326873.7:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000326873	NM_000455.4	100	Caa/Taa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			280	154	702	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	83	571	0	ENST00000397062.3:c.92G>C	p.Gly31Ala	p.G31A	ENST00000397062	NM_006164.4	31	gGa/gCa						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52437912	52437912	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			132	47	246	0	ENST00000460680.1:c.1251-2A>T		p.X417_splice	ENST00000460680	NM_004656.3	417							NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89390149	89390149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			278	66	572	0	ENST00000336596.2:c.898G>A	p.Gly300Ser	p.G300S	ENST00000336596	NM_005233.5	300	Ggt/Agt						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185161408	185161408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			242	50	635	0	ENST00000265026.3:c.835G>A	p.Asp279Asn	p.D279N	ENST00000265026	NM_004721.4	279	Gat/Aat						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56167813	56167813	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	37	543	2	ENST00000399503.3:c.1378G>T	p.Glu460Ter	p.E460*	ENST00000399503	NM_005921.1	460	Gaa/Taa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8499688	8499688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			292	125	675	1	ENST00000356435.5:c.2281G>T	p.Gly761Cys	p.G761C	ENST00000356435		761	Ggc/Tgc						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101907047	101907047	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			235	77	455	0	ENST00000374994.4:c.1007C>G	p.Ser336Ter	p.S336*	ENST00000374994	NM_004612.2	336	tCa/tGa						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73346364	73346364	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	56	597	0	ENST00000377767.4:c.1436A>G	p.Asp479Gly	p.D479G	ENST00000377767	NM_014953.3	479	gAc/gGc						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31384649	31384649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			387	43	673	0	ENST00000328111.2:c.1351G>T	p.Glu451Ter	p.E451*	ENST00000328111	NM_006892.3	451	Gag/Tag						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47041606	47041606	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			481	83	741	0	ENST00000329236.7:c.1597G>T	p.Glu533Ter	p.E533*	ENST00000329236	NM_001204466.1	533	Gag/Tag						NEWRECORD																																																																									
ARAF	369	MSKCC	GRCh37	X	47430395	47430395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			490	105	747	0	ENST00000377045.4:c.1670G>T	p.Arg557Leu	p.R557L	ENST00000377045	NM_001654.4	557	cGg/cTg						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76938508	76938508	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			315	51	761	0	ENST00000373344.5:c.2240G>C	p.Ser747Thr	p.S747T	ENST00000373344	NM_000489.3	747	aGt/aCt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001623-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	138	378	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56168793	56168793	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001623-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			500	157	357	0	ENST00000399503.3:c.1649del	p.Pro550LeufsTer7	p.P550Lfs*7	ENST00000399503	NM_005921.1	549	atC/at						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56161230	56161230	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001623-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			552	154	415	0	ENST00000399503.3:c.1099C>T	p.Gln367Ter	p.Q367*	ENST00000399503	NM_005921.1	367	Caa/Taa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs17849781		P-0001534-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1013	98	510	0	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act						NEWRECORD																																																																									
HIST1H3B	8358	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	380	1342	0	ENST00000244661.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000244661	NM_003537.3	106	Gag/Cag						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	397	1215	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa						NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	253	1357	0	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag						NEWRECORD																																																																									
PIK3CD	5293	MSKCC	GRCh37	1	9781634	9781634	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	133	751	0	ENST00000377346.4:c.1944C>G	p.Phe648Leu	p.F648L	ENST00000377346	NM_005026.3	648	ttC/ttG						NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36932338	36932338	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	240	1637	0	ENST00000361632.4:c.2131T>C	p.Ser711Pro	p.S711P	ENST00000361632		711	Tcc/Ccc						NEWRECORD																																																																									
FH	2271	MSKCC	GRCh37	1	241682991	241682991	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	138	546	0	ENST00000366560.3:c.32C>G	p.Ser11Trp	p.S11W	ENST00000366560	NM_000143.3	11	tCg/tGg						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142226907	142226907	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	132	779	0	ENST00000350721.4:c.4897C>G	p.Leu1633Val	p.L1633V	ENST00000350721	NM_001184.3	1633	Cta/Gta						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187549689	187549689	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	147	666	0	ENST00000441802.2:c.4552G>T	p.Glu1518Ter	p.E1518*	ENST00000441802	NM_005245.3	1518	Gag/Tag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112176446	112176446	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	124	605	0	ENST00000257430.4:c.5155G>C	p.Glu1719Gln	p.E1719Q	ENST00000257430	NM_000038.5	1719	Gag/Cag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112177184	112177184	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	114	698	0	ENST00000257430.4:c.5893C>G	p.His1965Asp	p.H1965D	ENST00000257430	NM_000038.5	1965	Cat/Gat						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157528335	157528335	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	167	998	0	ENST00000346085.5:c.6060G>C	p.Leu2020Phe	p.L2020F	ENST00000346085	NM_020732.3	2020	ttG/ttC						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81381439	81381439	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	167	846	0	ENST00000222390.5:c.622G>C	p.Glu208Gln	p.E208Q	ENST00000222390	NM_000601.4	208	Gaa/Caa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151874386	151874386	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	162	819	0	ENST00000262189.6:c.8152G>C	p.Glu2718Gln	p.E2718Q	ENST00000262189	NM_170606.2	2718	Gaa/Caa						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139403413	139403413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	182	1034	0	ENST00000277541.6:c.3080C>T	p.Ser1027Leu	p.S1027L	ENST00000277541	NM_017617.3	1027	tCa/tTa						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692794	89692794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	68	550	1	ENST00000371953.3:c.278A>G	p.His93Arg	p.H93R	ENST00000371953	NM_000314.4	93	cAt/cGt						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32417852	32417852	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1218	67	799	0	ENST00000332351.3:c.1200G>C	p.Lys400Asn	p.K400N	ENST00000332351	NM_024426.4	400	aaG/aaC						NEWRECORD																																																																									
FGF4	2249	MSKCC	GRCh37	11	69588863	69588863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2037	186	983	0	ENST00000168712.1:c.373G>A	p.Val125Met	p.V125M	ENST00000168712	NM_002007.2	125	Gtg/Atg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49433246	49433246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	182	976	0	ENST00000301067.7:c.8201G>A	p.Arg2734Gln	p.R2734Q	ENST00000301067	NM_003482.3	2734	cGa/cAa						NEWRECORD																																																																									
IGF1	3479	MSKCC	GRCh37	12	102811655	102811655	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	229	1556	0	ENST00000307046.8:c.529G>C	p.Glu177Gln	p.E177Q	ENST00000307046	NM_001111285.1	177	Gag/Cag						NEWRECORD																																																																									
NFKBIA	4792	MSKCC	GRCh37	14	35873811	35873811	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	127	698	0	ENST00000216797.5:c.40G>C	p.Glu14Gln	p.E14Q	ENST00000216797	NM_020529.2	14	Gag/Cag						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99460028	99460028	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	175	778	0	ENST00000268035.6:c.2124G>C	p.Glu708Asp	p.E708D	ENST00000268035	NM_000875.3	708	gaG/gaC						NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56792541	56792541	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	256	1305	0	ENST00000308159.5:c.271G>C	p.Glu91Gln	p.E91Q	ENST00000308159	NM_014669.4	91	Gag/Cag						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15276185	15276185	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	183	890	0	ENST00000263388.2:c.5809G>C	p.Glu1937Gln	p.E1937Q	ENST00000263388	NM_000435.2	1937	Gag/Cag						NEWRECORD																																																																									
GATA1	2623	MSKCC	GRCh37	X	48651603	48651603	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	207	1472	1	ENST00000376670.3:c.769C>T	p.Gln257Ter	p.Q257*	ENST00000376670	NM_002049.3	257	Cag/Tag						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061192	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	204	461	0	ENST00000250448.2:c.797_798del	p.Phe266Ter	p.F266*	ENST00000250448	NM_004496.3	266	tTC/t						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11292540	11292540	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	40	359	0	ENST00000361445.4:c.2467A>T	p.Ile823Phe	p.I823F	ENST00000361445	NM_004958.3	823	Atc/Ttc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023303	27023303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	15	84	0	ENST00000324856.7:c.409C>T	p.His137Tyr	p.H137Y	ENST00000324856	NM_006015.4	137	Cac/Tac						NEWRECORD																																																																									
MST1R	4486	MSKCC	GRCh37	3	49940133	49940133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	57	577	0	ENST00000296474.3:c.910C>A	p.Pro304Thr	p.P304T	ENST00000296474	NM_002447.2	304	Cca/Aca						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	19	98	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	179	296	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	166	466	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157099283	157099283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	42	157	0	ENST00000346085.5:c.220G>A	p.Glu74Lys	p.E74K	ENST00000346085	NM_020732.3	74	Gaa/Aaa						NEWRECORD																																																																									
MYC	4609	MSKCC	GRCh37	8	128752738	128752738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	50	252	0	ENST00000377970.2:c.899G>A	p.Gly300Glu	p.G300E	ENST00000377970	NM_002467.4	300	gGa/gAa						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5090778	5090778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	48	321	0	ENST00000381652.3:c.2926G>A	p.Asp976Asn	p.D976N	ENST00000381652	NM_004972.3	976	Gat/Aat						NEWRECORD																																																																									
PAK1	5058	MSKCC	GRCh37	11	77103515	77103515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	34	340	0	ENST00000356341.3:c.51G>A	p.Met17Ile	p.M17I	ENST00000356341	NM_002576.4	17	atG/atA						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95590677	95590677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1327	76	557	1	ENST00000343455.3:c.1232C>T	p.Ser411Leu	p.S411L	ENST00000343455	NM_177438.2	411	tCa/tTa						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72821625	72821625	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201772357		P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	11	53	0	ENST00000268489.5:c.10550G>A	p.Gly3517Asp	p.G3517D	ENST00000268489	NM_006885.3	3517	gGc/gAc						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89357577	89357577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	39	529	0	ENST00000301030.4:c.241G>A	p.Glu81Lys	p.E81K	ENST00000301030	NM_001256183.1	81	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	30	236	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
PPM1D	8493	MSKCC	GRCh37	17	58677936	58677936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	41	277	0	ENST00000305921.3:c.161C>T	p.Ser54Leu	p.S54L	ENST00000305921	NM_003620.3	54	tCg/tTg						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15376413	15376413	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	66	602	0	ENST00000263377.2:c.601C>G	p.Gln201Glu	p.Q201E	ENST00000263377	NM_058243.2	201	Caa/Gaa						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41420076	41420076	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	26	232	0	ENST00000373198.4:c.245G>C	p.Arg82Thr	p.R82T	ENST00000373198	NM_133170.3	82	aGa/aCa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0003258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	182	573	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
IFNGR1	3459	MSKCC	GRCh37	6	137522064	137522064	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	52	258	0	ENST00000367739.4:c.815A>C	p.Lys272Thr	p.K272T	ENST00000367739	NM_000416.2	272	aAa/aCa						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226567686	226567686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	52	474	0	ENST00000366794.5:c.1480G>A	p.Ala494Thr	p.A494T	ENST00000366794	NM_001618.3	494	Gcc/Acc						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32168613	32168613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	51	377	0	ENST00000375023.3:c.4310G>A	p.Gly1437Glu	p.G1437E	ENST00000375023	NM_004557.3	1437	gGg/gAg						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15365053	15365053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	72	387	0	ENST00000263377.2:c.2068G>T	p.Ala690Ser	p.A690S	ENST00000263377	NM_058243.2	690	Gcc/Tcc						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63410274	63410274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	52	545	0	ENST00000330258.3:c.2893C>T	p.Pro965Ser	p.P965S	ENST00000330258	NM_152424.3	965	Cct/Tct						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63412400	63412400	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	75	739	0	ENST00000330258.3:c.767A>G	p.Lys256Arg	p.K256R	ENST00000330258	NM_152424.3	256	aAa/aGa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187517963	187517963	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	97	301	0	ENST00000441802.2:c.12731A>C	p.Asp4244Ala	p.D4244A	ENST00000441802	NM_005245.3	4244	gAc/gCc						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81334837	81334838	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0003462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	184	305	1	ENST00000222390.5:c.1878_1879delinsAT	p.Asp626_Gly627delinsGluCys	p.D626_G627delinsEC	ENST00000222390	NM_000601.4	626	gaTGgc/gaATgc						NEWRECORD																																																																									
CDK6	1021	MSKCC	GRCh37	7	92354983	92354983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	165	297	0	ENST00000265734.4:c.494G>T	p.Gly165Val	p.G165V	ENST00000265734	NM_001259.6	165	gGc/gTc						NEWRECORD																																																																									
BIRC3	330	MSKCC	GRCh37	11	102207675	102207675	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	382	500	0	ENST00000263464.3:c.1657G>T	p.Glu553Ter	p.E553*	ENST00000263464	NM_001165.4	553	Gaa/Taa						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108154953	108154953	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0003462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	103	142	0	ENST00000278616.4:c.3747-1G>T		p.X1249_splice	ENST00000278616	NM_000051.3	1249							NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115109870	115109871	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0003462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	75	107	0	ENST00000257566.3:c.2007_2008delinsAA	p.Leu670Met	p.L670M	ENST00000257566	NM_016569.3	669	ccCCtg/ccAAtg						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115112187	115112187	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	121	258	0	ENST00000257566.3:c.1553T>G	p.Leu518Arg	p.L518R	ENST00000257566	NM_016569.3	518	cTc/cGc						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133225535	133225535	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	99	285	0	ENST00000320574.5:c.4129G>T	p.Glu1377Ter	p.E1377*	ENST00000320574	NM_006231.2	1377	Gag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782177		P-0003462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	363	436	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63545761	63545761	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	161	315	2	ENST00000307078.5:c.833A>T	p.Asp278Val	p.D278V	ENST00000307078	NM_004655.3	278	gAt/gTt						NEWRECORD																																																																									
SMARCB1	6598	MSKCC	GRCh37	22	24145486	24145486	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	160	289	0	ENST00000263121.7:c.505G>C	p.Asp169His	p.D169H	ENST00000263121	NM_003073.3	169	Gat/Cat						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720726	89720726	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			25	44	41	0	ENST00000371953.3:c.878delG	p.Gly293GlufsTer14	p.G293Efs*14	ENST00000371953	NM_000314.4	293	Gga/ga						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131953977	131953977	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			434	99	113	0	ENST00000265335.6:c.3380C>G	p.Thr1127Ser	p.T1127S	ENST00000265335		1127	aCt/aGt						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176637841	176637841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			531	243	175	0	ENST00000439151.2:c.2441G>T	p.Cys814Phe	p.C814F	ENST00000439151	NM_022455.4	814	tGc/tTc						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15296192	15296192	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			297	107	158	0	ENST00000263388.2:c.2172G>C	p.Trp724Cys	p.W724C	ENST00000263388	NM_000435.2	724	tgG/tgC						NEWRECORD																																																																									
FAM175A	84142	MSKCC	GRCh37	4	84388632	84388659	+	frameshift_variant	Frame_Shift_Del	DEL	TACATTTCATTTATCTTATGTACCTCCT	TACATTTCATTTATCTTATGTACCTCCT	-			P-0001290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1378	76	323	0	ENST00000321945.7:c.629_656del	p.Lys210MetfsTer8	p.K210Mfs*8	ENST00000321945	NM_139076.2	210	aAGGAGGTACATAAGATAAATGAAATGTAt/at						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151849844	151849844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000175-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			282	152	418	0	ENST00000262189.6:c.12472G>A	p.Val4158Met	p.V4158M	ENST00000262189	NM_170606.2	4158	Gtg/Atg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000175-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			203	84	421	0	ENST00000263967.3:c.3132T>A	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaA						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	29	478	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0004335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	20	291	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10597401	10597401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	38	540	0	ENST00000171111.5:c.1802G>T	p.Arg601Leu	p.R601L	ENST00000171111	NM_203500.1	601	cGg/cTg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002202-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			127	624	408	1	ENST00000342988.3:c.1610A>T	p.Asp537Val	p.D537V	ENST00000342988	NM_005359.5	537	gAc/gTc						NEWRECORD																																																																									
DAXX	1616	MSKCC	GRCh37	6	33287502	33287502	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002202-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			118	614	367	0	ENST00000374542.5:c.1595T>A	p.Leu532Ter	p.L532*	ENST00000374542	NM_001141970.1	532	tTa/tAa						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64575526	64575526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002202-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	609	367	0	ENST00000337652.1:c.506C>T	p.Ala169Val	p.A169V	ENST00000337652	NM_130803.2	169	gCc/gTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0001746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			62	128	753	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0001746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			71	31	721	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41277275	41277275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			154	67	701	0	ENST00000349496.5:c.1744C>T	p.Arg582Trp	p.R582W	ENST00000349496	NM_001904.3	582	Cgg/Tgg						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142274722	142274722	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			147	33	517	1	ENST00000350721.4:c.2338C>A	p.Leu780Ile	p.L780I	ENST00000350721	NM_001184.3	780	Ctt/Att						NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35874636	35874636	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			164	26	767	2	ENST00000303115.3:c.792G>T	p.Trp264Cys	p.W264C	ENST00000303115	NM_002185.3	264	tgG/tgT						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692791	89692791	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			50	47	421	0	ENST00000371953.3:c.275A>G	p.Asp92Gly	p.D92G	ENST00000371953	NM_000314.4	92	gAc/gGc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0001746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			100	63	702	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	23	441	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578213	7578213	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	105	1136	0	ENST00000269305.4:c.636delT	p.Arg213AspfsTer34	p.R213Dfs*34	ENST00000269305	NM_001126112.2	212	ttT/tt						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11270891	11270891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	42	820	0	ENST00000361445.4:c.3634C>A	p.Leu1212Ile	p.L1212I	ENST00000361445	NM_004958.3	1212	Ctc/Atc						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142281475	142281475	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	71	933	0	ENST00000350721.4:c.769C>G	p.Gln257Glu	p.Q257E	ENST00000350721	NM_001184.3	257	Cag/Gag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178919271	178919271	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	83	680	1	ENST00000263967.3:c.756A>T	p.Leu252Phe	p.L252F	ENST00000263967	NM_006218.2	252	ttA/ttT						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145741784	145741784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	124	913	1	ENST00000428558.2:c.719C>T	p.Ser240Leu	p.S240L	ENST00000428558	NM_004260.3	240	tCa/tTa						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133760320	133760321	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0004433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	152	775	0	ENST00000318560.5:c.2645_2646del	p.Ser882Ter	p.S882*	ENST00000318560	NM_005157.4	881	tcCTct/tcct						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11105628	11105630	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0004433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	81	696	0	ENST00000344626.4:c.1548_1550del	p.Lys517del	p.K517del	ENST00000344626	NM_003072.3	515	cAGAag/cag						NEWRECORD																																																																									
IRS1	3667	MSKCC	GRCh37	2	227660348	227660350	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0004433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	35	396	0	ENST00000305123.5:c.3105_3107del	p.Ser1038del	p.S1038del	ENST00000305123	NM_005544.2	1035	tcCTCa/tca						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	34	122	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0004310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	62	199	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89499342	89499342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	320	335	0	ENST00000336596.2:c.2512G>A	p.Asp838Asn	p.D838N	ENST00000336596	NM_005233.5	838	Gat/Aat						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134968233	134968233	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1021	175	526	0	ENST00000398015.3:c.2746G>C	p.Val916Leu	p.V916L	ENST00000398015	NM_004441.4	916	Gtg/Ctg						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66467863	66467863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			597	425	477	0	ENST00000273854.3:c.406G>T	p.Asp136Tyr	p.D136Y	ENST00000273854	NM_004439.5	136	Gac/Tac						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106156669	106156669	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			102	364	340	0	ENST00000380013.4:c.1570G>T	p.Glu524Ter	p.E524*	ENST00000380013	NM_001127208.2	524	Gag/Tag						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187630936	187630936	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			116	347	344	0	ENST00000441802.2:c.46C>T	p.Gln16Ter	p.Q16*	ENST00000441802	NM_005245.3	16	Caa/Taa						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1294042	1294042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	303	532	0	ENST00000310581.5:c.959C>T	p.Pro320Leu	p.P320L	ENST00000310581	NM_198253.2	320	cCt/cTt						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150004891	150004891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			474	353	432	0	ENST00000253339.5:c.1334C>T	p.Pro445Leu	p.P445L	ENST00000253339		445	cCg/cTg						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133759418	133759418	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	927	708	0	ENST00000318560.5:c.1741G>C	p.Glu581Gln	p.E581Q	ENST00000318560	NM_005157.4	581	Gag/Cag						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70432668	70432668	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			275	195	400	0	ENST00000373644.4:c.4690C>G	p.Gln1564Glu	p.Q1564E	ENST00000373644	NM_030625.2	1564	Caa/Gaa						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46285670	46285670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			659	225	447	0	ENST00000334344.6:c.5030G>T	p.Arg1677Leu	p.R1677L	ENST00000334344	NM_152641.2	1677	cGa/cTa						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49435051	49435051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			196	75	173	0	ENST00000301067.7:c.6502C>T	p.Pro2168Ser	p.P2168S	ENST00000301067	NM_003482.3	2168	Ccc/Tcc						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9923374	9923374	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			532	357	456	0	ENST00000330684.3:c.1913C>A	p.Ala638Asp	p.A638D	ENST00000330684	NM_001134407.1	638	gCt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579349	7579349	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			88	241	374	0	ENST00000269305.4:c.338T>G	p.Phe113Cys	p.F113C	ENST00000269305	NM_001126112.2	113	tTc/tGc						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2216464	2216464	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			278	243	344	0	ENST00000398665.3:c.2108A>T	p.His703Leu	p.H703L	ENST00000398665	NM_032482.2	703	cAc/cTc						NEWRECORD																																																																									
ERG	2078	MSKCC	GRCh37	21	39763596	39763596	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			353	351	390	0	ENST00000288319.7:c.856C>G	p.Gln286Glu	p.Q286E	ENST00000288319	NM_182918.3	286	Cag/Gag						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70348205	70348205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			87	232	296	0	ENST00000374080.3:c.3269C>T	p.Ala1090Val	p.A1090V	ENST00000374080		1090	gCa/gTa						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55953855	55953856	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			778	168	416	0	ENST00000263923.4:c.3580_3581delCT	p.Leu1194AlafsTer15	p.L1194Afs*15	ENST00000263923	NM_002253.2	1194	CTg/g						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002823-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			315	9	322	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002823-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			416	29	626	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0002823-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	41	607	0	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002823-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			722	44	690	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63533676	63533676	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367697282		P-0002823-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	38	631	0	ENST00000307078.5:c.1478C>T	p.Ser493Leu	p.S493L	ENST00000307078	NM_004655.3	493	tCg/tTg						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149449565	149449565	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002823-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			567	39	734	0	ENST00000286301.3:c.1381G>C	p.Glu461Gln	p.E461Q	ENST00000286301	NM_005211.3	461	Gag/Cag						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0002823-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			341	43	386	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116414994	116414994	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002823-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			652	57	680	0	ENST00000397752.3:c.3088G>C	p.Asp1030His	p.D1030H	ENST00000397752	NM_000245.2	1030	Gac/Cac						NEWRECORD																																																																									
MYOD1	4654	MSKCC	GRCh37	11	17742960	17742960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002823-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	28	486	0	ENST00000250003.3:c.868G>A	p.Glu290Lys	p.E290K	ENST00000250003	NM_002478.4	290	Gag/Aag						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32456785	32456785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002823-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			212	24	295	0	ENST00000332351.3:c.107C>T	p.Pro36Leu	p.P36L	ENST00000332351	NM_024426.4	36	cCg/cTg						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49033964	49033964	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002823-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			450	24	519	0	ENST00000267163.4:c.2101G>T	p.Asp701Tyr	p.D701Y	ENST00000267163	NM_000321.2	701	Gac/Tac						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2112562	2112562	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002823-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			446	27	560	0	ENST00000219476.3:c.1322G>A	p.Trp441Ter	p.W441*	ENST00000219476	NM_000548.3	441	tGg/tAg						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3828148	3828148	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002823-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			665	35	665	0	ENST00000262367.5:c.1977C>G	p.Tyr659Ter	p.Y659*	ENST00000262367	NM_004380.2	659	taC/taG						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577543	7577543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002823-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			519	29	519	0	ENST00000269305.4:c.738G>A	p.Met246Ile	p.M246I	ENST00000269305	NM_001126112.2	246	atG/atA						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41548347	41548347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002823-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			490	29	548	0	ENST00000263253.7:c.3135G>T	p.Lys1045Asn	p.K1045N	ENST00000263253	NM_001429.3	1045	aaG/aaT						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41551118	41551118	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0002823-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			625	38	686	0	ENST00000263253.7:c.3261+1G>C		p.X1087_splice	ENST00000263253	NM_001429.3	1087							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0001640-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	127	1152	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175240	112175240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001640-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			121	82	1167	0	ENST00000257430.4:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000257430	NM_000038.5	1317	Gaa/Taa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0003854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	49	240	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	62	357	2	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212587162	212587162	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	124	404	0	ENST00000342788.4:c.839A>G	p.Asn280Ser	p.N280S	ENST00000342788	NM_005235.2	280	aAt/aGt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938938	178938938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	18	133	0	ENST00000263967.3:c.2180C>T	p.Thr727Ile	p.T727I	ENST00000263967	NM_006218.2	727	aCa/aTa						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185146743	185146743	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	67	304	0	ENST00000265026.3:c.374G>T	p.Ser125Ile	p.S125I	ENST00000265026	NM_004721.4	125	aGt/aTt						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187532615	187532615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	28	394	0	ENST00000441802.2:c.9778G>A	p.Glu3260Lys	p.E3260K	ENST00000441802	NM_005245.3	3260	Gaa/Aaa						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21619982	21619982	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	42	462	1	ENST00000382592.4:c.184C>A	p.Gln62Lys	p.Q62K	ENST00000382592	NM_014572.2	62	Cag/Aag						NEWRECORD																																																																									
MAP2K1	5604	MSKCC	GRCh37	15	66679750	66679750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	59	433	1	ENST00000307102.5:c.65G>T	p.Gly22Val	p.G22V	ENST00000307102	NM_002755.3	22	gGg/gTg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40911128	40911128	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0003854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	165	561	0	ENST00000373198.4:c.2176+1G>T		p.X726_splice	ENST00000373198	NM_133170.3	726							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			480	255	349	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg						NEWRECORD																																																																									
PMS1	5378	MSKCC	GRCh37	2	190719635	190719635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			543	78	278	0	ENST00000441310.2:c.1637G>A	p.Cys546Tyr	p.C546Y	ENST00000441310	NM_000534.4	546	tGt/tAt						NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209101832	209101832	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			732	161	549	0	ENST00000345146.2:c.1216A>G	p.Lys406Glu	p.K406E	ENST00000345146	NM_005896.2	406	Aag/Gag						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142215987	142215987	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			642	166	352	0	ENST00000350721.4:c.5606A>G	p.Gln1869Arg	p.Q1869R	ENST00000350721	NM_001184.3	1869	cAg/cGg						NEWRECORD																																																																									
IDH2	3418	MSKCC	GRCh37	15	90634806	90634806	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			885	441	391	0	ENST00000330062.3:c.186C>G	p.Ile62Met	p.I62M	ENST00000330062	NM_002168.2	62	atC/atG						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48878160	48878161	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0001802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			177	91	126	0	ENST00000267163.4:c.112_113delinsTT	p.Gly38Phe	p.G38F	ENST00000267163	NM_000321.2	38	GGc/TTc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	96	304	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41246548	41246548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	67	424	0	ENST00000357654.3:c.1000C>T	p.Pro334Ser	p.P334S	ENST00000357654	NM_007294.3	334	Ccc/Tcc						NEWRECORD																																																																									
SMARCB1	6598	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	64	321	1	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11143994	11143994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	107	299	1	ENST00000358026.2:c.3575G>A	p.Arg1192His	p.R1192H	ENST00000358026	NM_001128849.1	1192	cGc/cAc						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48941715	48941716	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0003381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	101	269	0	ENST00000267163.4:c.1027_1028del	p.Leu343SerfsTer3	p.L343Sfs*3	ENST00000267163	NM_000321.2	342	aCT/a						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	34	226	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25470953	25470953	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	33	376	0	ENST00000264709.3:c.808G>T	p.Gly270Trp	p.G270W	ENST00000264709	NM_175629.2	270	Ggg/Tgg						NEWRECORD																																																																									
CTLA4	1493	MSKCC	GRCh37	2	204736116	204736116	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			630	52	357	0	ENST00000302823.3:c.473C>G	p.Pro158Arg	p.P158R	ENST00000302823	NM_005214.4	158	cCa/cGa						NEWRECORD																																																																									
GATA2	2624	MSKCC	GRCh37	3	128204914	128204914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	37	317	0	ENST00000341105.2:c.527C>T	p.Thr176Met	p.T176M	ENST00000341105	NM_032638.4	176	aCg/aTg						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180053207	180053207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			450	29	271	0	ENST00000261937.6:c.1162G>A	p.Glu388Lys	p.E388K	ENST00000261937	NM_182925.4	388	Gag/Aag						NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056210	26056210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			600	50	357	0	ENST00000343677.2:c.447G>T	p.Lys149Asn	p.K149N	ENST00000343677	NM_005319.3	149	aaG/aaT						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117642534	117642534	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			706	40	539	0	ENST00000368508.3:c.5665C>G	p.Gln1889Glu	p.Q1889E	ENST00000368508	NM_002944.2	1889	Caa/Gaa						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115112553	115112553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			435	28	302	2	ENST00000257566.3:c.1187C>T	p.Ser396Phe	p.S396F	ENST00000257566	NM_016569.3	396	tCc/tTc						NEWRECORD																																																																									
IDH2	3418	MSKCC	GRCh37	15	90631693	90631693	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			460	29	315	0	ENST00000330062.3:c.576C>G	p.Phe192Leu	p.F192L	ENST00000330062	NM_002168.2	192	ttC/ttG						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0000295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			219	10	147	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	10	153	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
ERCC3	2071	MSKCC	GRCh37	2	128047037	128047037	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	14	357	0	ENST00000285398.2:c.698C>A	p.Ser233Tyr	p.S233Y	ENST00000285398	NM_000122.1	233	tCc/tAc						NEWRECORD																																																																									
HIST1H3G	8355	MSKCC	GRCh37	6	26271460	26271460	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	35	554	0	ENST00000305910.3:c.153G>C	p.Glu51Asp	p.E51D	ENST00000305910	NM_003534.2	51	gaG/gaC						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151874425	151874425	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	15	312	0	ENST00000262189.6:c.8113G>C	p.Glu2705Gln	p.E2705Q	ENST00000262189	NM_170606.2	2705	Gag/Cag						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48955578	48955578	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0003233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	22	240	0	ENST00000267163.4:c.1694C>G	p.Ser565Ter	p.S565*	ENST00000267163	NM_000321.2	565	tCa/tGa						NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103513946	103513946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	11	279	0	ENST00000355739.4:c.762G>A	p.Met254Ile	p.M254I	ENST00000355739	NM_000123.3	254	atG/atA						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23647508	23647508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			58	14	295	0	ENST00000261584.4:c.359G>A	p.Arg120Lys	p.R120K	ENST00000261584	NM_024675.3	120	aGa/aAa						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68867343	68867343	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142927667		P-0003233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			39	10	297	0	ENST00000261769.5:c.2590G>A	p.Glu864Lys	p.E864K	ENST00000261769	NM_004360.3	864	Gaa/Aaa						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41489079	41489079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	29	231	0	ENST00000263253.7:c.71C>T	p.Ser24Leu	p.S24L	ENST00000263253	NM_001429.3	24	tCg/tTg						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76849304	76849304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	21	426	0	ENST00000373344.5:c.5972C>T	p.Ser1991Phe	p.S1991F	ENST00000373344	NM_000489.3	1991	tCt/tTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0004105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	135	429	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38947383	38947383	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	87	297	0	ENST00000357387.3:c.4297A>G	p.Ile1433Val	p.I1433V	ENST00000357387	NM_152756.3	1433	Ata/Gta						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70405292	70405292	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	64	336	0	ENST00000373644.4:c.2806A>G	p.Thr936Ala	p.T936A	ENST00000373644	NM_030625.2	936	Act/Gct						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70348228	70348228	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	146	417	1	ENST00000374080.3:c.3292G>C	p.Ala1098Pro	p.A1098P	ENST00000374080		1098	Gcc/Ccc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242470	55242493	+	protein_altering_variant	In_Frame_Del	DEL	TAAGAGAAGCAACATCTCCGAAAG	TAAGAGAAGCAACATCTCCGAAAG	CGATGT			P-0004105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	66	282	0	ENST00000275493.2:c.2240_2263delinsCGATGT	p.Leu747_Ala755delinsSerMetSer	p.L747_A755delinsSMS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCCGAAAGcc/tCGATGTcc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112155011	112155011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000563-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			232	56	189	0	ENST00000257430.4:c.1282G>A	p.Glu428Lys	p.E428K	ENST00000257430	NM_000038.5	428	Gaa/Aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000563-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			124	25	200	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7125470	7125470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000563-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			208	18	425	0	ENST00000302850.5:c.3082G>A	p.Glu1028Lys	p.E1028K	ENST00000302850	NM_000208.2	1028	Gag/Aag						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142281291	142281291	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0000732-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	54	216	0	ENST00000350721.4:c.953T>G	p.Leu318Ter	p.L318*	ENST00000350721	NM_001184.3	318	tTa/tGa						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142281532	142281532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000732-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			526	45	291	0	ENST00000350721.4:c.712G>A	p.Glu238Lys	p.E238K	ENST00000350721	NM_001184.3	238	Gag/Aag						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117730774	117730774	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145609658		P-0003152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	188	374	3	ENST00000368508.3:c.260C>T	p.Ala87Val	p.A87V	ENST00000368508	NM_002944.2	87	gCg/gTg						NEWRECORD																																																																									
EIF4A2	1974	MSKCC	GRCh37	3	186503795	186503795	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1220	331	483	0	ENST00000323963.5:c.472G>C	p.Gly158Arg	p.G158R	ENST00000323963		158	Ggt/Cgt						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86665670	86665670	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	277	227	0	ENST00000274376.6:c.1651G>T	p.Glu551Ter	p.E551*	ENST00000274376	NM_002890.2	551	Gaa/Taa						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	93955128	93955128	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	177	451	0	ENST00000369303.4:c.2770A>G	p.Thr924Ala	p.T924A	ENST00000369303	NM_004440.3	924	Acc/Gcc						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50455114	50455114	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	103	224	0	ENST00000331340.3:c.661G>C	p.Glu221Gln	p.E221Q	ENST00000331340	NM_006060.4	221	Gag/Cag						NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45007900	45007900	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0003152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	33	119	0	ENST00000558401.1:c.346+1G>C		p.X116_splice	ENST00000558401	NM_004048.2	116							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	314	174	0	ENST00000269305.4:c.542G>C	p.Arg181Pro	p.R181P	ENST00000269305	NM_001126112.2	181	cGc/cCc						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11145676	11145676	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	25	226	0	ENST00000344626.4:c.4038G>T	p.Trp1346Cys	p.W1346C	ENST00000344626	NM_003072.3	1346	tgG/tgT						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145741602	145741637	+	inframe_deletion	In_Frame_Del	DEL	CCCCTGGAGGGTCTTCCTCAACTGCTACAGCCCCAG	CCCCTGGAGGGTCTTCCTCAACTGCTACAGCCCCAG	-			P-0003152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	33	308	0	ENST00000428558.2:c.866_901del	p.Ala289_Gly300del	p.A289_G300del	ENST00000428558	NM_004260.3	289	gCTGGGGCTGTAGCAGTTGAGGAAGACCCTCCAGGGGaa/gaa						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48881489	48881490	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0003152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	290	252	0	ENST00000267163.4:c.219_220del	p.Arg73SerfsTer36	p.R73Sfs*36	ENST00000267163	NM_000321.2	71	AGa/a						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002156-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1003	75	538	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89259610	89259610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002156-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	69	261	0	ENST00000336596.2:c.754G>T	p.Val252Leu	p.V252L	ENST00000336596	NM_005233.5	252	Gta/Tta						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112178759	112178759	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002156-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			871	73	574	0	ENST00000257430.4:c.7468G>C	p.Asp2490His	p.D2490H	ENST00000257430	NM_000038.5	2490	Gat/Cat						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32163720	32163720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002156-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	25	266	0	ENST00000375023.3:c.5506G>C	p.Glu1836Gln	p.E1836Q	ENST00000375023	NM_004557.3	1836	Gag/Cag						NEWRECORD																																																																									
CCND2	894	MSKCC	GRCh37	12	4383308	4383308	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002156-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			634	64	433	0	ENST00000261254.3:c.102G>T	p.Glu34Asp	p.E34D	ENST00000261254	NM_001759.3	34	gaG/gaT						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18435490	18435490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002156-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			769	70	466	0	ENST00000266497.5:c.475G>A	p.Glu159Lys	p.E159K	ENST00000266497		159	Gaa/Aaa						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133248854	133248854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002156-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			750	71	444	1	ENST00000320574.5:c.1741G>A	p.Ala581Thr	p.A581T	ENST00000320574	NM_006231.2	581	Gcc/Acc						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44969442	44969442	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002156-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			501	95	362	0	ENST00000377967.4:c.4124T>C	p.Leu1375Pro	p.L1375P	ENST00000377967	NM_021140.2	1375	cTa/cCa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27092815	27092815	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002156-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			697	69	563	0	ENST00000324856.7:c.2840delC	p.Pro947HisfsTer21	p.P947Hfs*21	ENST00000324856	NM_006015.4	946	Ccc/cc						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0000626-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			561	21	369	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0000626-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	52	269	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215645844	215645844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000626-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			685	94	713	0	ENST00000260947.4:c.754C>T	p.Pro252Ser	p.P252S	ENST00000260947	NM_000465.2	252	Cct/Tct						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52651496	52651496	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000626-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			606	66	588	0	ENST00000394830.3:c.1600C>T	p.Arg534Ter	p.R534*	ENST00000394830	NM_018313.4	534	Cga/Tga						NEWRECORD																																																																									
GSK3B	2932	MSKCC	GRCh37	3	119642274	119642274	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000626-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			564	30	349	0	ENST00000316626.5:c.423A>T	p.Arg141Ser	p.R141S	ENST00000316626		141	agA/agT						NEWRECORD																																																																									
PRDM1	639	MSKCC	GRCh37	6	106555293	106555293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000626-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			277	28	217	0	ENST00000369096.4:c.2410C>A	p.Pro804Thr	p.P804T	ENST00000369096	NM_001198.3	804	Ccc/Acc						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	334	225	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	299	227	0	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			247	325	227	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			166	413	240	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga						NEWRECORD																																																																									
CDC73	79577	MSKCC	GRCh37	1	193094251	193094251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			889	185	290	1	ENST00000367435.3:c.141G>T	p.Lys47Asn	p.K47N	ENST00000367435	NM_024529.4	47	aaG/aaT						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226570814	226570814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			638	206	202	2	ENST00000366794.5:c.1082C>A	p.Thr361Asn	p.T361N	ENST00000366794	NM_001618.3	361	aCc/aAc						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243736238	243736238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			574	104	137	0	ENST00000263826.5:c.809G>A	p.Arg270His	p.R270H	ENST00000263826	NM_005465.4	270	cGt/cAt						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25497950	25497950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	75	129	0	ENST00000264709.3:c.499C>T	p.Arg167Trp	p.R167W	ENST00000264709	NM_175629.2	167	Cgg/Tgg						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38958863	38958863	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			722	402	305	0	ENST00000357387.3:c.2249G>A	p.Trp750Ter	p.W750*	ENST00000357387	NM_152756.3	750	tGg/tAg						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55371005	55371005	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			188	70	136	0	ENST00000297316.4:c.307G>T	p.Gly103Cys	p.G103C	ENST00000297316	NM_022454.3	103	Ggc/Tgc						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108203549	108203549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	134	132	0	ENST00000278616.4:c.7849G>A	p.Val2617Ile	p.V2617I	ENST00000278616	NM_000051.3	2617	Gtc/Atc						NEWRECORD																																																																									
TSHR	7253	MSKCC	GRCh37	14	81610687	81610687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			292	90	221	1	ENST00000298171.2:c.2285C>T	p.Thr762Met	p.T762M	ENST00000298171	NM_000369.2	762	aCg/aTg						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59853886	59853886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	136	302	0	ENST00000259008.2:c.1973G>A	p.Arg658Gln	p.R658Q	ENST00000259008	NM_032043.2	658	cGg/cAg						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5231335	5231335	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769069932		P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	45	211	0	ENST00000357368.4:c.2141G>A	p.Arg714His	p.R714H	ENST00000357368	NM_002850.3	714	cGc/cAc						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17949084	17949084	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			528	169	259	2	ENST00000458235.1:c.1557C>G	p.Asp519Glu	p.D519E	ENST00000458235	NM_000215.3	519	gaC/gaG						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226552732	226552739	+	frameshift_variant	Frame_Shift_Del	DEL	GACCCTGG	GACCCTGG	-			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			738	88	218	1	ENST00000366794.5:c.2622_2629del	p.Gln875SerfsTer6	p.Q875Sfs*6	ENST00000366794	NM_001618.3	874	tcCCAGGGTCtt/tctt						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198265540	198265540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	175	345	0	ENST00000335508.6:c.2617G>A	p.Glu873Lys	p.E873K	ENST00000335508	NM_012433.2	873	Gag/Aag						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73349348	73349348	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0003773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	165	269	1	ENST00000377767.4:c.987+1G>T		p.X329_splice	ENST00000377767	NM_014953.3	329							NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3779565	3779565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	38	363	0	ENST00000262367.5:c.5483A>G	p.Tyr1828Cys	p.Y1828C	ENST00000262367	NM_004380.2	1828	tAc/tGc						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86627283	86627283	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	46	293	0	ENST00000274376.6:c.660del	p.Ser222AlafsTer3	p.S222Afs*3	ENST00000274376	NM_002890.2	220	Ttt/tt						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266105	41266119	+	protein_altering_variant	In_Frame_Del	DEL	AATCCATTCTGGTGC	AATCCATTCTGGTGC	TGT			P-0003773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	102	307	0	ENST00000349496.5:c.102_116delinsTGT	p.Ile35_Ala39delinsVal	p.I35_A39delinsV	ENST00000349496	NM_001904.3	34	ggAATCCATTCTGGTGCc/ggTGTc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0003773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	112	278	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0002091-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	904	349	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70404534	70404534	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002091-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			765	607	508	0	ENST00000373644.4:c.2048A>C	p.Gln683Pro	p.Q683P	ENST00000373644	NM_030625.2	683	cAa/cCa						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48941628	48941628	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0002091-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			168	999	305	0	ENST00000267163.4:c.940-2A>G		p.X314_splice	ENST00000267163	NM_000321.2	314							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577113	7577113	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002091-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			117	927	440	0	ENST00000269305.4:c.825T>G	p.Cys275Trp	p.C275W	ENST00000269305	NM_001126112.2	275	tgT/tgG						NEWRECORD																																																																									
GNA11	2767	MSKCC	GRCh37	19	3118945	3118945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002091-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	151	346	0	ENST00000078429.4:c.629G>T	p.Arg210Leu	p.R210L	ENST00000078429	NM_002067.2	210	cGg/cTg						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57466856	57466856	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002091-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			349	124	271	0	ENST00000371085.3:c.75G>C	p.Lys25Asn	p.K25N	ENST00000371085	NM_000516.4	25	aaG/aaC						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123159723	123159723	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002091-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1682	284	531	0	ENST00000218089.9:c.78T>A	p.Asp26Glu	p.D26E	ENST00000218089	NM_001042749.1	26	gaT/gaA						NEWRECORD																																																																									
CCND1	595	MSKCC	GRCh37	11	69458752	69458754	+	missense_variant	Missense_Mutation	ONP	TGC	TGC	GCA			P-0001312-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			828	89	273	0	ENST00000227507.2:c.567_569inv	p.Cys189_Ala190delinsTrpHis	p.C189_A190delinsWH	ENST00000227507	NM_053056.2	189	tgTGCc/tgGCAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0001312-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	453	318	0	ENST00000269305.4:c.993+1G>C		p.X331_splice	ENST00000269305	NM_001126112.2	331							NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151845894	151845894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001845-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			297	104	274	0	ENST00000262189.6:c.13118C>A	p.Pro4373Gln	p.P4373Q	ENST00000262189	NM_170606.2	4373	cCa/cAa						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105243048	105243048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001845-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			396	153	228	0	ENST00000349310.3:c.235C>A	p.Gln79Lys	p.Q79K	ENST00000349310	NM_001014432.1	79	Cag/Aag						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29653152	29653152	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001845-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	86	178	0	ENST00000358273.4:c.5150A>G	p.Glu1717Gly	p.E1717G	ENST00000358273	NM_001042492.2	1717	gAg/gGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0003259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	98	303	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0003259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	140	426	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81346550	81346550	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs148293411		P-0003259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	110	386	0	ENST00000222390.5:c.1403G>A	p.Arg468His	p.R468H	ENST00000222390	NM_000601.4	468	cGt/cAt						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17945961	17945961	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	161	585	0	ENST00000458235.1:c.1978G>C	p.Ala660Pro	p.A660P	ENST00000458235	NM_000215.3	660	Gct/Cct						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0002309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1192	360	451	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0002309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			548	891	421	1	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			407	135	367	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0002309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			667	135	449	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt						NEWRECORD																																																																									
IRF4	3662	MSKCC	GRCh37	6	395904	395904	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			705	90	483	0	ENST00000380956.4:c.461T>C	p.Met154Thr	p.M154T	ENST00000380956	NM_001195286.1	154	aTg/aCg						NEWRECORD																																																																									
EZH2	2146	MSKCC	GRCh37	7	148513825	148513825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			822	78	446	0	ENST00000320356.2:c.1456C>T	p.Pro486Ser	p.P486S	ENST00000320356	NM_004456.4	486	Ccc/Tcc						NEWRECORD																																																																									
EED	8726	MSKCC	GRCh37	11	85968616	85968618	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0002309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			881	96	394	0	ENST00000263360.6:c.615_617del	p.Leu207del	p.L207del	ENST00000263360	NM_003797.3	204	aaTCTt/aat						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782144		P-0002279-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	112	468	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106687	27106687	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002279-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	136	534	0	ENST00000324856.7:c.6298C>T	p.Gln2100Ter	p.Q2100*	ENST00000324856	NM_006015.4	2100	Cag/Tag						NEWRECORD																																																																									
MCL1	4170	MSKCC	GRCh37	1	150550867	150550867	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002279-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			664	178	460	0	ENST00000369026.2:c.789G>T	p.Arg263Ser	p.R263S	ENST00000369026	NM_021960.4	263	agG/agT						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139395006	139395006	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0002279-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	77	258	0	ENST00000277541.6:c.5932C>T	p.Gln1978Ter	p.Q1978*	ENST00000277541	NM_017617.3	1978	Cag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378667	25378667	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002279-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			752	175	599	0	ENST00000256078.4:c.331A>C	p.Met111Leu	p.M111L	ENST00000256078	NM_033360.2	111	Atg/Ctg						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974739	21974739	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002279-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			389	89	474	0	ENST00000304494.5:c.88del	p.Ala30ArgfsTer23	p.A30Rfs*23	ENST00000304494	NM_000077.4	30	Gcg/cg						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			20	43	224	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc						NEWRECORD																																																																									
GNAQ	2776	MSKCC	GRCh37	9	80430562	80430562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			43	28	167	0	ENST00000286548.4:c.446G>A	p.Arg149Gln	p.R149Q	ENST00000286548	NM_002072.3	149	cGa/cAa						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63759985	63759985	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	79	266	0	ENST00000279873.7:c.638T>C	p.Ile213Thr	p.I213T	ENST00000279873	NM_032199.2	213	aTt/aCt						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123181276	123181278	+	inframe_deletion	In_Frame_Del	DEL	AAT	AAT	-			P-0003616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			66	36	218	0	ENST00000218089.9:c.741_743delATA	p.Gln247_Tyr248delinsHis	p.Q247_Y248delinsH	ENST00000218089	NM_001042749.1	247	cAATat/cat						NEWRECORD																																																																									
GATA2	2624	MSKCC	GRCh37	3	128204758	128204758	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001141-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			738	511	583	0	ENST00000341105.2:c.683C>A	p.Pro228His	p.P228H	ENST00000341105	NM_032638.4	228	cCc/cAc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178927384	178927384	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0001141-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			698	132	328	0	ENST00000263967.3:c.1147T>C	p.Trp383Arg	p.W383R	ENST00000263967	NM_006218.2	383	Tgg/Cgg						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2953022	2953022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001141-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			620	71	320	0	ENST00000396946.4:c.2918G>A	p.Arg973His	p.R973H	ENST00000396946	NM_032415.4	973	cGc/cAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578467	7578467	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001528-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			195	214	366	0	ENST00000269305.4:c.463A>C	p.Thr155Pro	p.T155P	ENST00000269305	NM_001126112.2	155	Acc/Ccc						NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056648	26056648	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001528-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			156	72	89	0	ENST00000343677.2:c.9G>C	p.Glu3Asp	p.E3D	ENST00000343677	NM_005319.3	3	gaG/gaC						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89690802	89690802	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0001528-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			187	202	273	0	ENST00000371953.3:c.210-1G>C		p.X70_splice	ENST00000371953	NM_000314.4	70							NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52440373	52440373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002840-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			748	59	391	0	ENST00000460680.1:c.679N>T	p.Arg227Cys	p.R227C	ENST00000460680	NM_004656.3	227	Cgc/Tgc						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176721879	176721879	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002840-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			763	129	451	0	ENST00000439151.2:c.7510G>C	p.Val2504Leu	p.V2504L	ENST00000439151	NM_022455.4	2504	Gtt/Ctt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578213	7578213	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002840-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			748	305	668	0	ENST00000269305.4:c.636delT	p.Arg213AspfsTer34	p.R213Dfs*34	ENST00000269305	NM_001126112.2	212	ttT/tt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0001108-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	183	419	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	11998995	11998995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001108-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			597	112	271	0	ENST00000353533.5:c.497G>A	p.Gly166Asp	p.G166D	ENST00000353533	NM_003010.3	166	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0003437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	242	446	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0003437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	89	373	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0003437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	77	211	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0003437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	115	378	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180048131	180048131	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	52	413	0	ENST00000261937.6:c.2142C>A	p.Asp714Glu	p.D714E	ENST00000261937	NM_182925.4	714	gaC/gaA						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28895656	28895656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1220	137	408	0	ENST00000282397.4:c.3118G>A	p.Asp1040Asn	p.D1040N	ENST00000282397	NM_002019.4	1040	Gat/Aat						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64571965	64571965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001184-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	178	662	0	ENST00000337652.1:c.1689G>A	p.Met563Ile	p.M563I	ENST00000337652	NM_130803.2	563	atG/atA						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16265876	16265886	+	frameshift_variant	Frame_Shift_Del	DEL	TCTCCAACATC	TCTCCAACATC	-			P-0001184-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			725	71	619	0	ENST00000375759.3:c.10954_10964del	p.Asn3652ProfsTer13	p.N3652Pfs*13	ENST00000375759	NM_015001.2	3650	aTCTCCAACATC/a						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11303249	11303249	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			743	67	440	0	ENST00000361445.4:c.1334G>C	p.Arg445Thr	p.R445T	ENST00000361445	NM_004958.3	445	aGg/aCg						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212248471	212248471	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1125	89	567	0	ENST00000342788.4:c.3796T>C	p.Tyr1266His	p.Y1266H	ENST00000342788	NM_005235.2	1266	Tat/Cat						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66356415	66356415	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			642	56	305	0	ENST00000273854.3:c.1082C>A	p.Pro361His	p.P361H	ENST00000273854	NM_004439.5	361	cCt/cAt						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187542810	187542810	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1145	67	533	0	ENST00000441802.2:c.4930A>G	p.Ser1644Gly	p.S1644G	ENST00000441802	NM_005245.3	1644	Agt/Ggt						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187628452	187628452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			807	64	521	0	ENST00000441802.2:c.2530G>A	p.Val844Ile	p.V844I	ENST00000441802	NM_005245.3	844	Gtt/Att						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81331980	81331980	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1120	162	428	0	ENST00000222390.5:c.2104C>G	p.Arg702Gly	p.R702G	ENST00000222390	NM_000601.4	702	Cgt/Ggt						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145737591	145737591	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			513	90	435	0	ENST00000428558.2:c.3172C>G	p.Arg1058Gly	p.R1058G	ENST00000428558	NM_004260.3	1058	Cgt/Ggt						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8517883	8517883	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1230	113	574	0	ENST00000356435.5:c.1508T>A	p.Leu503His	p.L503H	ENST00000356435		503	cTt/cAt						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110434487	110434487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			592	51	435	0	ENST00000375856.3:c.3914G>T	p.Gly1305Val	p.G1305V	ENST00000375856	NM_003749.2	1305	gGg/gTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			634	61	558	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261							NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42795484	42795484	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			403	45	416	0	ENST00000575354.2:c.2564G>T	p.Gly855Val	p.G855V	ENST00000575354	NM_015125.3	855	gGc/gTc						NEWRECORD																																																																									
NF2	4771	MSKCC	GRCh37	22	30032866	30032866	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			516	41	298	0	ENST00000338641.4:c.240+1G>T		p.X80_splice	ENST00000338641	NM_000268.3	80							NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11141498	11141498	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			622	51	603	0	ENST00000344626.4:c.3480delG	p.Leu1161SerfsTer3	p.L1161Sfs*3	ENST00000344626	NM_003072.3	1159	Ggg/gg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0003518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	135	344	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0003518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	119	355	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16062133	16062133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	101	486	0	ENST00000268712.3:c.673C>A	p.Pro225Thr	p.P225T	ENST00000268712	NM_006311.3	225	Cct/Act						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151845646	151845646	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0004468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	214	196	0	ENST00000262189.6:c.13366A>T	p.Arg4456Ter	p.R4456*	ENST00000262189	NM_170606.2	4456	Aga/Tga						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64571952	64571952	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	712	435	0	ENST00000337652.1:c.1702G>T	p.Glu568Ter	p.E568*	ENST00000337652	NM_130803.2	568	Gag/Tag						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108236216	108236216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	134	221	0	ENST00000278616.4:c.9152G>T	p.Gly3051Val	p.G3051V	ENST00000278616	NM_000051.3	3051	gGa/gTa						NEWRECORD																																																																									
AXL	558	MSKCC	GRCh37	19	41762464	41762464	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	149	182	0	ENST00000301178.4:c.2144G>A	p.Trp715Ter	p.W715*	ENST00000301178	NM_021913.4	715	tGg/tAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0001274-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	191	603	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224							NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	152009027	152009027	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001274-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			390	116	273	0	ENST00000262189.6:c.595C>T	p.Arg199Ter	p.R199*	ENST00000262189	NM_170606.2	199	Cga/Tga						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9523268	9523268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001274-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			778	210	617	0	ENST00000353224.5:c.1969delG	p.Asp657ThrfsTer7	p.D657Tfs*7	ENST00000353224	NM_177990.2	657	Gac/ac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0003216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	460	339	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc						NEWRECORD																																																																									
PLK2	10769	MSKCC	GRCh37	5	57751983	57751983	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0003216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	239	206	0	ENST00000274289.3:c.1255-1G>T		p.X419_splice	ENST00000274289	NM_006622.3	419							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0000830-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			333	140	232	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89880930	89880930	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0004061-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			584	421	484	0	ENST00000389301.3:c.281T>C	p.Ile94Thr	p.I94T	ENST00000389301	NM_000135.2	94	aTa/aCa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112176740	112176743	+	frameshift_variant	Frame_Shift_Del	DEL	AAAA	AAAA	-			P-0004061-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			144	278	465	0	ENST00000257430.4:c.5450_5453delAAAA	p.Lys1817IlefsTer45	p.K1817Ifs*45	ENST00000257430	NM_000038.5	1817	AAAAat/at						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0003714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	229	322	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42042766	42042766	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	148	631	1	ENST00000219905.7:c.6961G>T	p.Asp2321Tyr	p.D2321Y	ENST00000219905	NM_001164273.1	2321	Gat/Tat						NEWRECORD																																																																									
PAK1	5058	MSKCC	GRCh37	11	77054904	77054906	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0003714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	129	531	0	ENST00000356341.3:c.956_958del	p.Met319del	p.M319del	ENST00000356341	NM_002576.4	319	aTGAgg/agg						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0003322-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	17	336	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0003322-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	70	329	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242483	55242506	+	inframe_deletion	In_Frame_Del	DEL	ATCTCCGAAAGCCAACAAGGAAAT	ATCTCCGAAAGCCAACAAGGAAAT	-			P-0003322-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	75	262	0	ENST00000275493.2:c.2253_2276del	p.Ser752_Ile759del	p.S752_I759del	ENST00000275493	NM_005228.3	751	acATCTCCGAAAGCCAACAAGGAAATc/acc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002905-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			436	112	469	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PDCD1	5133	MSKCC	GRCh37	2	242794422	242794422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002905-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	85	420	1	ENST00000334409.5:c.520G>A	p.Val174Met	p.V174M	ENST00000334409	NM_005018.2	174	Gtg/Atg						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	11998901	11998901	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002905-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			321	187	386	1	ENST00000353533.5:c.403T>A	p.Ser135Thr	p.S135T	ENST00000353533	NM_003010.3	135	Tca/Aca						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207204	1207204	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0002905-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			167	106	243	0	ENST00000326873.7:c.290+2T>A		p.X97_splice	ENST00000326873	NM_000455.4	97							NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610423	10610423	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002905-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			198	186	410	0	ENST00000171111.5:c.287A>G	p.His96Arg	p.H96R	ENST00000171111	NM_203500.1	96	cAc/cGc						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81359053	81359053	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	33	454	0	ENST00000222390.5:c.908C>G	p.Thr303Ser	p.T303S	ENST00000222390	NM_000601.4	303	aCt/aGt						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508349	106508349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	16	107	0	ENST00000359195.3:c.343G>T	p.Val115Leu	p.V115L	ENST00000359195	NM_002649.2	115	Gtg/Ttg						NEWRECORD																																																																									
IGF2	3481	MSKCC	GRCh37	11	2161390	2161390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	55	448	0	ENST00000434045.2:c.137G>T	p.Arg46Leu	p.R46L	ENST00000434045	NM_001127598.1	46	cGc/cTc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220703	1220703	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	41	347	0	ENST00000326873.7:c.721G>C	p.Ala241Pro	p.A241P	ENST00000326873	NM_000455.4	241	Gct/Cct						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602764	10602764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	44	358	2	ENST00000171111.5:c.814C>T	p.Arg272Cys	p.R272C	ENST00000171111	NM_203500.1	272	Cgc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577137	7577138	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0004131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	40	431	0	ENST00000269305.4:c.800_801delinsTT	p.Arg267Leu	p.R267L	ENST00000269305	NM_001126112.2	267	cGG/cTT						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001427-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	32	312	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0001427-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	65	320	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332							NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49438209	49438209	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001427-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			267	25	473	0	ENST00000301067.7:c.5060G>T	p.Arg1687Leu	p.R1687L	ENST00000301067	NM_003482.3	1687	cGc/cTc						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56492721	56492722	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0001427-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			253	60	394	0	ENST00000407977.2:c.217_218delinsTT	p.Ala73Phe	p.A73F	ENST00000407977		73	GCt/TTt						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47165074	47165074	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002228-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	138	397	0	ENST00000409792.3:c.1052T>A	p.Phe351Tyr	p.F351Y	ENST00000409792	NM_014159.6	351	tTt/tAt						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152265578	152265578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002228-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			430	24	189	0	ENST00000206249.3:c.1031G>A	p.Gly344Asp	p.G344D	ENST00000206249	NM_000125.3	344	gGc/gAc						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21563185	21563185	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002228-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			511	62	295	0	ENST00000382592.4:c.734A>G	p.His245Arg	p.H245R	ENST00000382592	NM_014572.2	245	cAc/cGc						NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519947		P-0002369-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			756	31	737	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64577222	64577224	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0002369-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			268	264	633	0	ENST00000337652.1:c.358_360del	p.Lys120del	p.K120del	ENST00000337652	NM_130803.2	120	AAG/-						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717608	89717608	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0002369-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	31	427	0	ENST00000371953.3:c.635-2A>G		p.X212_splice	ENST00000371953	NM_000314.4	212							NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2962849	2962849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002369-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			436	149	621	0	ENST00000396946.4:c.2059G>A	p.Ala687Thr	p.A687T	ENST00000396946	NM_032415.4	687	Gcg/Acg						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106863	27106867	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGA	AAAGA	-			P-0002369-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	104	448	0	ENST00000324856.7:c.6475_6479del	p.Lys2159ProfsTer64	p.K2159Pfs*64	ENST00000324856	NM_006015.4	2158	cgAAAGAac/cgac						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76778784	76778786	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0002369-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			635	57	1032	5	ENST00000373344.5:c.6793_6795del	p.Glu2265del	p.E2265del	ENST00000373344	NM_000489.3	2265	GAG/-						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0001419-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			397	433	400	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8111554	8111554	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001419-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	469	428	0	ENST00000346208.3:c.1040T>G	p.Leu347Arg	p.L347R	ENST00000346208		347	cTt/cGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576875	7576875	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	264	265	0	ENST00000269305.4:c.971A>C	p.Asp324Ala	p.D324A	ENST00000269305	NM_001126112.2	324	gAt/gCt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576869	7576870	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0003535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	257	260	0	ENST00000269305.4:c.976_977del	p.Glu326IlefsTer10	p.E326Ifs*10	ENST00000269305	NM_001126112.2	326	GAa/a						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000946-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			152	88	135	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151882675	151882675	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000197-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			946	74	341	1	ENST00000262189.6:c.5050A>C	p.Lys1684Gln	p.K1684Q	ENST00000262189	NM_170606.2	1684	Aaa/Caa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577587	7577587	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000197-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			571	51	318	0	ENST00000269305.4:c.694A>T	p.Ile232Phe	p.I232F	ENST00000269305	NM_001126112.2	232	Atc/Ttc						NEWRECORD																																																																									
YES1	7525	MSKCC	GRCh37	18	756709	756709	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0000197-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1466	110	552	0	ENST00000314574.4:c.119C>G	p.Ser40Ter	p.S40*	ENST00000314574	NM_005433.3	40	tCa/tGa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	81	253	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0004182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	160	606	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
SDHB	6390	MSKCC	GRCh37	1	17371294	17371294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	41	461	0	ENST00000375499.3:c.162C>A	p.Asp54Glu	p.D54E	ENST00000375499	NM_003000.2	54	gaC/gaA						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176638571	176638571	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	140	436	0	ENST00000439151.2:c.3171del	p.Gln1058SerfsTer5	p.Q1058Sfs*5	ENST00000439151	NM_022455.4	1057	aaT/aa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	151	624	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32169278	32169278	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0003676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	47	339	0	ENST00000375023.3:c.3756-1G>C		p.X1252_splice	ENST00000375023	NM_004557.3	1252							NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187532897	187532897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000392-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			844	52	247	0	ENST00000441802.2:c.9496G>A	p.Asp3166Asn	p.D3166N	ENST00000441802	NM_005245.3	3166	Gac/Aac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000392-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			379	19	163	0	ENST00000269305.4:c.398T>G	p.Met133Arg	p.M133R	ENST00000269305	NM_001126112.2	133	aTg/aGg						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123195125	123195125	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000392-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1275	81	327	0	ENST00000218089.9:c.1468G>T	p.Glu490Ter	p.E490*	ENST00000218089	NM_001042749.1	490	Gag/Tag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	8	157	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45374944	45374944	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	47	306	0	ENST00000262160.6:c.899A>G	p.Asp300Gly	p.D300G	ENST00000262160	NM_005901.5	300	gAt/gGt						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs121913370		P-0003284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	28	188	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106861	27106861	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	71	232	1	ENST00000324856.7:c.6472C>T	p.Arg2158Ter	p.R2158*	ENST00000324856	NM_006015.4	2158	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112170647	112170647	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	28	250	0	ENST00000257430.4:c.1744-1G>A		p.X582_splice	ENST00000257430	NM_000038.5	582							NEWRECORD																																																																									
ETV6	2120	MSKCC	GRCh37	12	11905466	11905466	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144209028		P-0003284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	34	192	0	ENST00000396373.4:c.116G>A	p.Arg39Gln	p.R39Q	ENST00000396373	NM_001987.4	39	cGa/cAa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112176029	112176029	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	26	245	0	ENST00000257430.4:c.4738del	p.Ile1580PhefsTer70	p.I1580Ffs*70	ENST00000257430	NM_000038.5	1580	Att/tt						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67482760	67482761	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0003284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	95	397	0	ENST00000327367.4:c.1166_1167del	p.Val389AspfsTer8	p.V389Dfs*8	ENST00000327367	NM_005902.3	388	acTGtg/actg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			102	41	157	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153245404	153245404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	79	201	0	ENST00000281708.4:c.1787C>T	p.Ser596Phe	p.S596F	ENST00000281708	NM_033632.3	596	tCt/tTt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	100	153	0	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174152	112174152	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0000678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	86	229	0	ENST00000257430.4:c.2861T>A	p.Leu954Ter	p.L954*	ENST00000257430	NM_000038.5	954	tTa/tAa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175852	112175852	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			94	82	87	0	ENST00000257430.4:c.4561G>T	p.Glu1521Ter	p.E1521*	ENST00000257430	NM_000038.5	1521	Gaa/Taa						NEWRECORD																																																																									
ETV1	2115	MSKCC	GRCh37	7	14026284	14026284	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	108	164	0	ENST00000405192.2:c.160C>A	p.Gln54Lys	p.Q54K	ENST00000405192	NM_001163147.1	54	Cag/Aag						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	396853	396853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			234	102	322	0	ENST00000262320.3:c.173C>T	p.Thr58Met	p.T58M	ENST00000262320	NM_003502.3	58	aCg/aTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0000678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			53	91	160	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70117648	70117648	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	105	334	0	ENST00000245479.2:c.116C>G	p.Ser39Cys	p.S39C	ENST00000245479	NM_000346.3	39	tCc/tGc						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602808	10602808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	115	255	0	ENST00000171111.5:c.770G>A	p.Cys257Tyr	p.C257Y	ENST00000171111	NM_203500.1	257	tGc/tAc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0000678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			156	144	246	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64577260	64577260	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002621-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			13	71	504	0	ENST00000337652.1:c.322C>T	p.Arg108Ter	p.R108*	ENST00000337652	NM_130803.2	108	Cga/Tga						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	41991085	41991085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002621-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			63	10	579	0	ENST00000219905.7:c.2038G>T	p.Asp680Tyr	p.D680Y	ENST00000219905	NM_001164273.1	680	Gat/Tat						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	41991095	41991095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002621-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			68	12	612	0	ENST00000219905.7:c.2048C>T	p.Thr683Ile	p.T683I	ENST00000219905	NM_001164273.1	683	aCa/aTa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002458-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			540	89	608	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0002458-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	49	259	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga						NEWRECORD																																																																									
HIST1H3B	8358	MSKCC	GRCh37	6	26032039	26032039	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002458-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	56	317	0	ENST00000244661.2:c.250C>A	p.Arg84Ser	p.R84S	ENST00000244661	NM_003537.3	84	Cgc/Agc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27101707	27101712	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CATTGG	CATTGG	A			P-0002458-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	38	401	0	ENST00000324856.7:c.4989_4993+1delinsA		p.X1663_splice	ENST00000324856	NM_006015.4	1663							NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604764	48604766	+	inframe_deletion	In_Frame_Del	DEL	TAC	TAC	-			P-0002458-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			475	67	537	0	ENST00000342988.3:c.1586_1588del	p.Leu529_His530delinsTyr	p.L529_H530delinsY	ENST00000342988	NM_005359.5	529	tTACac/tac						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0004238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	45	287	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55575705	55575708	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTA	AGTA	-			P-0004238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	43	258	0	ENST00000288135.5:c.1231+5_1231+8del		p.X411_splice	ENST00000288135	NM_000222.2	411							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0001861-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	19	314	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16254684	16254684	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001861-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			561	32	548	0	ENST00000375759.3:c.1949A>G	p.Tyr650Cys	p.Y650C	ENST00000375759	NM_015001.2	650	tAt/tGt						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123185221	123185221	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001861-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	37	271	0	ENST00000218089.9:c.1173A>G	p.Ile391Met	p.I391M	ENST00000218089	NM_001042749.1	391	atA/atG						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47158153	47158153	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	99	493	0	ENST00000409792.3:c.4546T>C	p.Cys1516Arg	p.C1516R	ENST00000409792	NM_014159.6	1516	Tgt/Cgt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	103	151	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	240	358	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa						NEWRECORD																																																																									
CASP8	841	MSKCC	GRCh37	2	202149562	202149562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	209	280	0	ENST00000358485.4:c.1003G>A	p.Glu335Lys	p.E335K	ENST00000358485	NM_001080125.1	335	Gag/Aag						NEWRECORD																																																																									
CASP8	841	MSKCC	GRCh37	2	202149574	202149574	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	210	284	0	ENST00000358485.4:c.1015G>C	p.Glu339Gln	p.E339Q	ENST00000358485	NM_001080125.1	339	Gag/Cag						NEWRECORD																																																																									
INHA	3623	MSKCC	GRCh37	2	220439878	220439878	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148455844		P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	188	376	0	ENST00000243786.2:c.731C>T	p.Ser244Phe	p.S244F	ENST00000243786	NM_002191.3	244	tCt/tTt						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47059211	47059211	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	250	212	0	ENST00000409792.3:c.7450C>T	p.Gln2484Ter	p.Q2484*	ENST00000409792	NM_014159.6	2484	Cag/Tag						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187542342	187542342	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	124	188	0	ENST00000441802.2:c.5398G>C	p.Asp1800His	p.D1800H	ENST00000441802	NM_005245.3	1800	Gat/Cat						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38950024	38950024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	130	224	0	ENST00000357387.3:c.3926C>T	p.Ala1309Val	p.A1309V	ENST00000357387	NM_152756.3	1309	gCt/gTt						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2984157	2984157	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	63	117	0	ENST00000396946.4:c.373G>C	p.Glu125Gln	p.E125Q	ENST00000396946	NM_032415.4	125	Gag/Cag						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139417337	139417337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	89	161	0	ENST00000277541.6:c.707C>T	p.Thr236Met	p.T236M	ENST00000277541	NM_017617.3	236	aCg/aTg						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70446328	70446328	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	266	367	0	ENST00000373644.4:c.5268G>C	p.Lys1756Asn	p.K1756N	ENST00000373644	NM_030625.2	1756	aaG/aaC						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46246017	46246017	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	234	290	0	ENST00000334344.6:c.4111C>G	p.His1371Asp	p.H1371D	ENST00000334344	NM_152641.2	1371	Cat/Gat						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21557738	21557738	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	200	323	0	ENST00000382592.4:c.2107G>A	p.Asp703Asn	p.D703N	ENST00000382592	NM_014572.2	703	Gat/Aat						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99250978	99250978	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	138	320	0	ENST00000268035.6:c.282G>C	p.Glu94Asp	p.E94D	ENST00000268035	NM_000875.3	94	gaG/gaC						NEWRECORD																																																																									
RAD51C	5889	MSKCC	GRCh37	17	56770065	56770065	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	132	253	0	ENST00000337432.4:c.61C>G	p.Pro21Ala	p.P21A	ENST00000337432	NM_058216.2	21	Cca/Gca						NEWRECORD																																																																									
CCNE1	898	MSKCC	GRCh37	19	30303646	30303646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	131	268	0	ENST00000262643.3:c.74C>T	p.Ser25Leu	p.S25L	ENST00000262643	NM_001238.2	25	tCg/tTg						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31385038	31385038	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	133	233	0	ENST00000328111.2:c.1423C>T	p.Gln475Ter	p.Q475*	ENST00000328111	NM_006892.3	475	Cag/Tag						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63412392	63412392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	238	402	1	ENST00000330258.3:c.775G>A	p.Glu259Lys	p.E259K	ENST00000330258	NM_152424.3	259	Gaa/Aaa						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76938094	76938094	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	134	337	0	ENST00000373344.5:c.2654G>C	p.Arg885Thr	p.R885T	ENST00000373344	NM_000489.3	885	aGa/aCa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27102081	27102091	+	frameshift_variant	Frame_Shift_Del	DEL	ATGGCGGGTAA	ATGGCGGGTAA	G			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	184	329	0	ENST00000324856.7:c.5007_5017delinsG	p.Trp1670Ter	p.W1670*	ENST00000324856	NM_006015.4	1669	gcATGGCGGGTAAtg/gcGtg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0000695-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			81	11	137	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000695-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			107	24	235	1	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000695-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			69	27	165	0	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41385221	41385221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000695-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			120	109	282	0	ENST00000373198.4:c.740G>A	p.Arg247His	p.R247H	ENST00000373198	NM_133170.3	247	cGc/cAc						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70357069	70357069	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200279192		P-0000695-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	16	352	0	ENST00000374080.3:c.5584C>T	p.Arg1862Cys	p.R1862C	ENST00000374080		1862	Cgc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002564-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			193	132	264	0	ENST00000269305.4:c.712T>G	p.Cys238Gly	p.C238G	ENST00000269305	NM_001126112.2	238	Tgt/Ggt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0002670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			189	96	246	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112178805	112178805	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147549623		P-0002670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	61	470	2	ENST00000257430.4:c.7514G>A	p.Arg2505Gln	p.R2505Q	ENST00000257430	NM_000038.5	2505	cGa/cAa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0002670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			247	63	212	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa						NEWRECORD																																																																									
SDHB	6390	MSKCC	GRCh37	1	17371343	17371343	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143058777		P-0002670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	143	437	0	ENST00000375499.3:c.113G>A	p.Arg38His	p.R38H	ENST00000375499	NM_003000.2	38	cGt/cAt						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56480320	56480320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			378	72	329	0	ENST00000267101.3:c.427C>A	p.Leu143Met	p.L143M	ENST00000267101	NM_001982.3	143	Ctg/Atg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577091	7577091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149633775		P-0002670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			311	184	449	0	ENST00000269305.4:c.847C>T	p.Arg283Cys	p.R283C	ENST00000269305	NM_001126112.2	283	Cgc/Tgc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40748596	40748596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			540	43	351	0	ENST00000373198.4:c.2920C>T	p.Arg974Trp	p.R974W	ENST00000373198	NM_133170.3	974	Cgg/Tgg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174623	112174624	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	G			P-0002670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			408	122	467	0	ENST00000257430.4:c.3332_3333delinsG	p.Glu1111GlyfsTer15	p.E1111Gfs*15	ENST00000257430	NM_000038.5	1111	gAA/gG						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578245	7578245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	8	519	0	ENST00000269305.4:c.604C>T	p.Arg202Cys	p.R202C	ENST00000269305	NM_001126112.2	202	Cgt/Tgt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49433068	49433075	+	frameshift_variant	Frame_Shift_Del	DEL	CTAGGGAA	CTAGGGAA	A			P-0003390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	63	474	0	ENST00000301067.7:c.8297_8303delTCCCTAG	p.Phe2766SerfsTer19	p.F2766Sfs*19	ENST00000301067	NM_003482.3	2766	TTCCCTAGc/Tc						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64573830	64573830	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002913-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			35	283	219	0	ENST00000337652.1:c.938C>A	p.Ser313Ter	p.S313*	ENST00000337652	NM_130803.2	313	tCa/tAa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0001550-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			523	300	355	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001550-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			387	132	279	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29497970	29497970	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001550-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			484	169	315	0	ENST00000389048.3:c.2036C>A	p.Pro679His	p.P679H	ENST00000389048	NM_004304.4	679	cCt/cAt						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52696189	52696189	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001550-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			683	119	434	0	ENST00000394830.3:c.488A>T	p.Asp163Val	p.D163V	ENST00000394830	NM_018313.4	163	gAt/gTt						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66201693	66201693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001550-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	74	383	0	ENST00000273854.3:c.2809C>A	p.Arg937Ser	p.R937S	ENST00000273854	NM_004439.5	937	Cgt/Agt						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131944902	131944902	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0001550-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			501	48	264	0	ENST00000265335.6:c.2922+1G>A		p.X974_splice	ENST00000265335		974							NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81386589	81386589	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001550-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			633	97	320	0	ENST00000222390.5:c.398G>T	p.Gly133Val	p.G133V	ENST00000222390	NM_000601.4	133	gGa/gTa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8517961	8517961	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001550-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			635	96	402	0	ENST00000356435.5:c.1430C>A	p.Thr477Asn	p.T477N	ENST00000356435		477	aCt/aAt						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115114223	115114223	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001550-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			490	173	370	0	ENST00000257566.3:c.994G>C	p.Glu332Gln	p.E332Q	ENST00000257566	NM_016569.3	332	Gag/Cag						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610637	10610637	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001550-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	33	261	0	ENST00000171111.5:c.73G>C	p.Glu25Gln	p.E25Q	ENST00000171111	NM_203500.1	25	Gag/Cag						NEWRECORD																																																																									
TOP1	7150	MSKCC	GRCh37	20	39746924	39746924	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001550-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			471	89	208	0	ENST00000361337.2:c.1938C>G	p.Asn646Lys	p.N646K	ENST00000361337	NM_003286.2	646	aaC/aaG						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76778848	76778848	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001550-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			557	92	435	0	ENST00000373344.5:c.6731A>T	p.His2244Leu	p.H2244L	ENST00000373344	NM_000489.3	2244	cAt/cTt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	11	157	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0003782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	20	290	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587782289		P-0003782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	17	276	0	ENST00000269305.4:c.706T>C	p.Tyr236His	p.Y236H	ENST00000269305	NM_001126112.2	236	Tac/Cac						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11319453	11319453	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	115	499	0	ENST00000361445.4:c.14G>C	p.Gly5Ala	p.G5A	ENST00000361445	NM_004958.3	5	gGa/gCa						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30675877	30675877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	184	973	0	ENST00000376406.3:c.2479G>A	p.Glu827Lys	p.E827K	ENST00000376406	NM_014641.2	827	Gag/Aag						NEWRECORD																																																																									
STAT5A	6776	MSKCC	GRCh37	17	40441912	40441912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	724	1190	0	ENST00000345506.4:c.157G>A	p.Asp53Asn	p.D53N	ENST00000345506	NM_003152.3	53	Gac/Aac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577512	7577513	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0004612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	172	466	0	ENST00000269305.4:c.768_769delAC	p.Leu257GlyfsTer6	p.L257Gfs*6	ENST00000269305	NM_001126112.2	256	acACtg/actg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0000903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1062	85	663	1	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1159	120	628	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55153596	55153596	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0000903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			628	65	528	0	ENST00000257290.5:c.2563-1G>C		p.X855_splice	ENST00000257290	NM_006206.4	855							NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8484163	8484163	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			843	167	612	0	ENST00000356435.5:c.3369G>T	p.Met1123Ile	p.M1123I	ENST00000356435		1123	atG/atT						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135781032	135781032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			776	101	798	0	ENST00000298552.3:c.1933C>T	p.Pro645Ser	p.P645S	ENST00000298552	NM_001162426.1	645	Cca/Tca						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70406651	70406651	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			878	95	793	1	ENST00000373644.4:c.4165G>C	p.Asp1389His	p.D1389H	ENST00000373644	NM_030625.2	1389	Gac/Cac						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88690619	88690619	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			570	76	341	0	ENST00000360948.2:c.411C>G	p.Asn137Lys	p.N137K	ENST00000360948	NM_001012338.2	137	aaC/aaG						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23635412	23635412	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			565	54	513	0	ENST00000261584.4:c.2752C>G	p.Pro918Ala	p.P918A	ENST00000261584	NM_024675.3	918	Cca/Gca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			225	32	343	0	ENST00000269305.4:c.773A>T	p.Glu258Val	p.E258V	ENST00000269305	NM_001126112.2	258	gAa/gTa						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11101956	11101956	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	54	262	0	ENST00000344626.4:c.1376A>C	p.Gln459Pro	p.Q459P	ENST00000344626	NM_003072.3	459	cAg/cCg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			884	257	274	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150004217	150004217	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0000635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1408	186	388	1	ENST00000253339.5:c.2008C>T	p.Arg670Trp	p.R670W	ENST00000253339		670	Cgg/Tgg						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32421553	32421553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			683	68	142	0	ENST00000332351.3:c.1039C>T	p.Pro347Ser	p.P347S	ENST00000332351	NM_024426.4	347	Ccc/Tcc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0000635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1250	171	320	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc						NEWRECORD																																																																									
NKX2-1	7080	MSKCC	GRCh37	14	36987033	36987033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			615	78	205	0	ENST00000354822.5:c.656C>T	p.Pro219Leu	p.P219L	ENST00000354822	NM_001079668.2	219	cCg/cTg						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47161856	47161856	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002253-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			190	72	1065	0	ENST00000409792.3:c.4270del	p.Arg1424GlufsTer8	p.R1424Efs*8	ENST00000409792	NM_014159.6	1424	Aga/ga						NEWRECORD																																																																									
DAXX	1616	MSKCC	GRCh37	6	33289242	33289245	+	frameshift_variant	Frame_Shift_Del	DEL	CCGC	CCGC	-			P-0002253-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			203	202	514	0	ENST00000374542.5:c.307_310del	p.Ala103SerfsTer40	p.A103Sfs*40	ENST00000374542	NM_001141970.1	103	GCGGag/ag						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64575456	64575456	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002253-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			192	198	905	0	ENST00000337652.1:c.576del	p.Asn194MetfsTer35	p.N194Mfs*35	ENST00000337652	NM_130803.2	192	ggG/gg						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001525-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			475	725	444	0	ENST00000349496.5:c.1982G>A	p.Arg661Gln	p.R661Q	ENST00000349496	NM_001904.3	661	cGa/cAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001525-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	386	343	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc						NEWRECORD																																																																									
LMO1	4004	MSKCC	GRCh37	11	8251982	8251982	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001525-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			583	223	487	0	ENST00000335790.3:c.95del	p.Lys32ArgfsTer6	p.K32Rfs*6	ENST00000335790	NM_002315.2	32	aAg/ag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0003489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	174	315	2	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0003489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	26	356	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0003489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	57	407	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg						NEWRECORD																																																																									
NEGR1	257194	MSKCC	GRCh37	1	72748072	72748072	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	49	534	0	ENST00000357731.5:c.106C>T	p.Gln36Ter	p.Q36*	ENST00000357731	NM_173808.2	36	Cag/Tag						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47142949	47142949	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0003489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	82	271	1	ENST00000409792.3:c.5014G>T	p.Gly1672Ter	p.G1672*	ENST00000409792	NM_014159.6	1672	Gga/Tga						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42052606	42052606	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	85	474	0	ENST00000219905.7:c.7277G>T	p.Arg2426Leu	p.R2426L	ENST00000219905	NM_001164273.1	2426	cGg/cTg						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23652447	23652447	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	36	350	0	ENST00000261584.4:c.32G>T	p.Cys11Phe	p.C11F	ENST00000261584	NM_024675.3	11	tGt/tTt						NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56864483	56864483	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	151	478	0	ENST00000308159.5:c.971A>G	p.Tyr324Cys	p.Y324C	ENST00000308159	NM_014669.4	324	tAc/tGc						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44929255	44929255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	69	246	0	ENST00000377967.4:c.2355G>T	p.Met785Ile	p.M785I	ENST00000377967	NM_021140.2	785	atG/atT						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720670	89720670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786204875		P-0000473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			101	22	83	0	ENST00000371953.3:c.821G>A	p.Trp274Ter	p.W274*	ENST00000371953	NM_000314.4	274	tGg/tAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578202	7578202	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			614	97	745	0	ENST00000269305.4:c.647T>A	p.Val216Glu	p.V216E	ENST00000269305	NM_001126112.2	216	gTg/gAg						NEWRECORD																																																																									
TMPRSS2	7113	MSKCC	GRCh37	21	42845405	42845405	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			308	178	373	0	ENST00000398585.3:c.857A>G	p.Asn286Ser	p.N286S	ENST00000398585	NM_001135099.1	286	aAc/aGc						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123156482	123156482	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1461	127	785	0	ENST00000218089.9:c.5T>A	p.Ile2Lys	p.I2K	ENST00000218089	NM_001042749.1	2	aTa/aAa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			141	119	382	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			204	128	248	1	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149515397	149515397	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17110944		P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			245	14	224	0	ENST00000261799.4:c.85A>T	p.Ile29Phe	p.I29F	ENST00000261799	NM_002609.3	29	Atc/Ttc						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187630597	187630597	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs41278611		P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			285	16	496	0	ENST00000441802.2:c.385G>C	p.Val129Leu	p.V129L	ENST00000441802	NM_005245.3	129	Gtg/Ctg						NEWRECORD																																																																									
FH	2271	MSKCC	GRCh37	1	241663795	241663795	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			120	39	141	0	ENST00000366560.3:c.1332G>T	p.Arg444Ser	p.R444S	ENST00000366560	NM_000143.3	444	agG/agT						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	30142931	30142931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	144	371	0	ENST00000389048.3:c.595G>A	p.Gly199Ser	p.G199S	ENST00000389048	NM_004304.4	199	Ggc/Agc						NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48025969	48025969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			291	115	278	0	ENST00000234420.5:c.847G>T	p.Gly283Trp	p.G283W	ENST00000234420	NM_000179.2	283	Ggg/Tgg						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215645471	215645471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	68	595	0	ENST00000260947.4:c.1127C>T	p.Ser376Leu	p.S376L	ENST00000260947	NM_000465.2	376	tCa/tTa						NEWRECORD																																																																									
NPM1	4869	MSKCC	GRCh37	5	170819735	170819735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			68	123	138	0	ENST00000296930.5:c.374C>T	p.Ser125Leu	p.S125L	ENST00000296930	NM_002520.6	125	tCa/tTa						NEWRECORD																																																																									
H3F3C	440093	MSKCC	GRCh37	12	31944985	31944985	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs3759295		P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	22	276	0	ENST00000340398.3:c.116A>C	p.His39Pro	p.H39P	ENST00000340398	NM_001013699.2	39	cAt/cCt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578548	7578548	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			154	114	192	0	ENST00000269305.4:c.382C>G	p.Pro128Ala	p.P128A	ENST00000269305	NM_001126112.2	128	Cct/Gct						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5265205	5265205	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			124	119	235	0	ENST00000357368.4:c.382G>T	p.Asp128Tyr	p.D128Y	ENST00000357368	NM_002850.3	128	Gac/Tac						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41420088	41420088	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			182	74	204	0	ENST00000373198.4:c.233A>G	p.Asn78Ser	p.N78S	ENST00000373198	NM_133170.3	78	aAc/aGc						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39911382	39911382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	88	488	0	ENST00000378444.4:c.5248G>T	p.Ala1750Ser	p.A1750S	ENST00000378444	NM_001123385.1	1750	Gcc/Tcc						NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100608326	100608326	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			257	135	534	0	ENST00000308731.7:c.1764G>T	p.Trp588Cys	p.W588C	ENST00000308731	NM_000061.2	588	tgG/tgT						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123196808	123196808	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			230	59	523	0	ENST00000218089.9:c.1695G>T	p.Glu565Asp	p.E565D	ENST00000218089	NM_001042749.1	565	gaG/gaT						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48955485	48955499	+	inframe_deletion	In_Frame_Del	DEL	GTTTTATCAAAGCAG	GTTTTATCAAAGCAG	-			P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			108	48	355	0	ENST00000267163.4:c.1601_1615del	p.Ser534_Glu539delinsLys	p.S534_E539delinsK	ENST00000267163	NM_000321.2	534	aGTTTTATCAAAGCAGaa/aaa						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0003595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	153	361	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0003595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	202	462	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187517959	187517959	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	114	374	0	ENST00000441802.2:c.12735A>G	p.Ile4245Met	p.I4245M	ENST00000441802	NM_005245.3	4245	atA/atG						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508689	106508689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	98	336	0	ENST00000359195.3:c.683C>A	p.Thr228Asn	p.T228N	ENST00000359195	NM_002649.2	228	aCc/aAc						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70450747	70450747	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	139	374	0	ENST00000373644.4:c.5587A>C	p.Lys1863Gln	p.K1863Q	ENST00000373644	NM_030625.2	1863	Aag/Cag						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114799860	114799860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	115	609	0	ENST00000543371.1:c.527G>T	p.Arg176Leu	p.R176L	ENST00000543371	NM_001198531.1	176	cGg/cTg						NEWRECORD																																																																									
CBL	867	MSKCC	GRCh37	11	119169100	119169100	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	47	322	0	ENST00000264033.4:c.2284A>T	p.Thr762Ser	p.T762S	ENST00000264033	NM_005188.3	762	Act/Tct						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66937401	66937401	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	217	570	0	ENST00000374690.3:c.2255G>A	p.Trp752Ter	p.W752*	ENST00000374690	NM_000044.3	752	tGg/tAg						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971037	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0003595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	103	159	1	ENST00000304494.5:c.321_322del	p.Asp108CysfsTer11	p.D108Cfs*11	ENST00000304494	NM_000077.4	107	cgCGat/cgat						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610154	10610154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	448	504	0	ENST00000171111.5:c.556G>T	p.Gly186Cys	p.G186C	ENST00000171111	NM_203500.1	186	Ggc/Tgc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0004591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	487	345	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226555950	226555950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	265	288	0	ENST00000366794.5:c.2227G>T	p.Asp743Tyr	p.D743Y	ENST00000366794	NM_001618.3	743	Gac/Tac						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221279	1221309	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAAGGGGAGCTACGCCATCCCGGGCGACT	GGGAAGGGGAGCTACGCCATCCCGGGCGACT	-			P-0004591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	317	408	1	ENST00000326873.7:c.803_833del	p.Gly268ValfsTer9	p.G268Vfs*9	ENST00000326873	NM_000455.4	268	GGGAAGGGGAGCTACGCCATCCCGGGCGACTgt/gt						NEWRECORD																																																																									
HRAS	3265	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28933406		P-0003037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	28	290	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0004220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	63	324	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	251	524	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0004220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	77	370	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175621	112175621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	144	692	0	ENST00000257430.4:c.4330C>T	p.Gln1444Ter	p.Q1444*	ENST00000257430	NM_000038.5	1444	Caa/Taa						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11169361	11169361	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	76	699	0	ENST00000361445.4:c.7514G>C	p.Arg2505Pro	p.R2505P	ENST00000361445	NM_004958.3	2505	cGa/cCa						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49438703	49438703	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			122	175	438	0	ENST00000301067.7:c.4787G>T	p.Gly1596Val	p.G1596V	ENST00000301067	NM_003482.3	1596	gGc/gTc						NEWRECORD																																																																									
CDK4	1019	MSKCC	GRCh37	12	58144446	58144446	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140644696		P-0004220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	228	352	0	ENST00000257904.6:c.625C>T	p.Arg209Cys	p.R209C	ENST00000257904	NM_000075.3	209	Cgt/Tgt						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	265	511	0	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	304	496	0	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT						NEWRECORD																																																																									
MAPK1	5594	MSKCC	GRCh37	22	22160230	22160230	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	110	440	0	ENST00000215832.6:c.401T>C	p.Leu134Pro	p.L134P	ENST00000215832	NM_002745.4	134	cTc/cCc						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67358533	67358599	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTGCTGGGCTGGAAGAAGGGCGAGCAGAACGGGCAGGAGGAGAAATGGTGCGAGAAGGCGGTCAA	GCCTGCTGGGCTGGAAGAAGGGCGAGCAGAACGGGCAGGAGGAGAAATGGTGCGAGAAGGCGGTCAA	-			P-0004220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	53	376	0	ENST00000327367.4:c.42_108del	p.Leu15AlafsTer79	p.L15Afs*79	ENST00000327367	NM_005902.3	14	cGCCTGCTGGGCTGGAAGAAGGGCGAGCAGAACGGGCAGGAGGAGAAATGGTGCGAGAAGGCGGTCAAg/cg						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70120205	70120226	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCCCAGCCACTACAGCGAGC	AGCCCCAGCCACTACAGCGAGC	-			P-0004220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	114	379	0	ENST00000245479.2:c.1210_1231del	p.Pro404SerfsTer59	p.P404Sfs*59	ENST00000245479	NM_000346.3	403	AGCCCCAGCCACTACAGCGAGCag/ag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			175	95	362	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0001977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			75	32	278	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023735	27023735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			69	24	105	0	ENST00000324856.7:c.841G>T	p.Ala281Ser	p.A281S	ENST00000324856	NM_006015.4	281	Gcg/Tcg						NEWRECORD																																																																									
MUTYH	4595	MSKCC	GRCh37	1	45798266	45798266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			92	14	304	0	ENST00000372115.3:c.628G>A	p.Ala210Thr	p.A210T	ENST00000372115	NM_001048171.1	210	Gcc/Acc						NEWRECORD																																																																									
MYCN	4613	MSKCC	GRCh37	2	16085647	16085647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			105	14	303	0	ENST00000281043.3:c.823G>A	p.Glu275Lys	p.E275K	ENST00000281043	NM_005378.4	275	Gaa/Aaa						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55569972	55569972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	32	435	0	ENST00000288135.5:c.839C>A	p.Ala280Glu	p.A280E	ENST00000288135	NM_000222.2	280	gCg/gAg						NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35867448	35867448	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	53	301	0	ENST00000303115.3:c.262C>A	p.Leu88Ile	p.L88I	ENST00000303115	NM_002185.3	88	Cta/Ata						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91328180	91328180	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	36	358	0	ENST00000355112.3:c.2692A>T	p.Arg898Trp	p.R898W	ENST00000355112	NM_000057.2	898	Agg/Tgg						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67670713	67670713	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			118	15	361	0	ENST00000264010.4:c.1958G>T	p.Gly653Val	p.G653V	ENST00000264010	NM_006565.3	653	gGa/gTa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0003923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	158	322	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	72	119	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0003923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	142	259	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	103	252	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0003923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	120	256	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc						NEWRECORD																																																																									
MPL	4352	MSKCC	GRCh37	1	43814578	43814578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	179	396	3	ENST00000372470.3:c.1373G>T	p.Arg458Leu	p.R458L	ENST00000372470	NM_005373.2	458	cGt/cTt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249026	55249026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	104	276	2	ENST00000275493.2:c.2324G>A	p.Cys775Tyr	p.C775Y	ENST00000275493	NM_005228.3	775	tGc/tAc						NEWRECORD																																																																									
PAK1	5058	MSKCC	GRCh37	11	77047294	77047294	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	152	317	0	ENST00000356341.3:c.1250A>T	p.Glu417Val	p.E417V	ENST00000356341	NM_002576.4	417	gAg/gTg						NEWRECORD																																																																									
TSHR	7253	MSKCC	GRCh37	14	81610490	81610490	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	169	328	0	ENST00000298171.2:c.2088T>A	p.Phe696Leu	p.F696L	ENST00000298171	NM_000369.2	696	ttT/ttA						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48584749	48584752	+	frameshift_variant	Frame_Shift_Del	DEL	ACAC	ACAC	-			P-0003923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	159	287	0	ENST00000342988.3:c.829_832del	p.Thr277LeufsTer58	p.T277Lfs*58	ENST00000342988	NM_005359.5	276	tACACa/ta						NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50906409	50906418	+	frameshift_variant	Frame_Shift_Del	DEL	TGCGGCCCTG	TGCGGCCCTG	GGGGGCCTT			P-0003923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	187	510	0	ENST00000440232.2:c.1070_1079delinsGGGGGCCTT	p.Leu357ArgfsTer36	p.L357Rfs*36	ENST00000440232	NM_002691.3	357	cTGCGGCCCTGt/cGGGGGCCTTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0003192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	295	643	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga						NEWRECORD																																																																									
REL	5966	MSKCC	GRCh37	2	61149590	61149590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	36	353	0	ENST00000295025.8:c.1780G>T	p.Asp594Tyr	p.D594Y	ENST00000295025	NM_002908.2	594	Gat/Tat						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000526-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			459	435	368	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0000526-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			299	355	477	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98209721	98209721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000526-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	62	117	0	ENST00000331920.6:c.3817G>A	p.Glu1273Lys	p.E1273K	ENST00000331920	NM_000264.3	1273	Gaa/Aaa						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108175528	108175528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000526-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	327	282	0	ENST00000278616.4:c.5623C>T	p.Arg1875Ter	p.R1875*	ENST00000278616	NM_000051.3	1875	Cga/Tga						NEWRECORD																																																																									
HNF1A	6927	MSKCC	GRCh37	12	121434070	121434070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000526-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			620	153	413	1	ENST00000257555.6:c.961C>T	p.Arg321Cys	p.R321C	ENST00000257555		321	Cgc/Tgc						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42793513	42793513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000526-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			474	133	288	0	ENST00000575354.2:c.1315G>A	p.Glu439Lys	p.E439K	ENST00000575354	NM_015125.3	439	Gag/Aag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0003145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	16	278	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29455299	29455299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	54	193	0	ENST00000389048.3:c.2503C>T	p.Pro835Ser	p.P835S	ENST00000389048	NM_004304.4	835	Ccg/Tcg						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128845620	128845620	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	46	193	0	ENST00000249373.3:c.917C>A	p.Pro306His	p.P306H	ENST00000249373	NM_005631.4	306	cCc/cAc						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	35	215	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87325644	87325644	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	88	305	0	ENST00000277120.3:c.521T>C	p.Leu174Ser	p.L174S	ENST00000277120		174	tTg/tCg						NEWRECORD																																																																									
SUFU	51684	MSKCC	GRCh37	10	104389868	104389868	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	84	310	0	ENST00000369902.3:c.1411G>T	p.Val471Phe	p.V471F	ENST00000369902	NM_016169.3	471	Gtc/Ttc						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48919323	48919323	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	56	172	0	ENST00000267163.4:c.488G>T	p.Ser163Ile	p.S163I	ENST00000267163	NM_000321.2	163	aGc/aTc						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2111998	2111998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	59	201	0	ENST00000219476.3:c.1246G>T	p.Asp416Tyr	p.D416Y	ENST00000219476	NM_000548.3	416	Gac/Tac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	71	176	0	ENST00000269305.4:c.497C>G	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tGa						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11097084	11097084	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	122	335	0	ENST00000344626.4:c.579del	p.Gln194SerfsTer109	p.Q194Sfs*109	ENST00000344626	NM_003072.3	192	aGg/ag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0004210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	161	313	1	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0001672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			56	135	355	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			121	188	319	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108200978	108200978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			107	79	291	0	ENST00000278616.4:c.7345G>A	p.Glu2449Lys	p.E2449K	ENST00000278616	NM_000051.3	2449	Gaa/Aaa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187517966	187517966	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0001672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			229	205	335	2	ENST00000441802.2:c.12728C>G	p.Ser4243Ter	p.S4243*	ENST00000441802	NM_005245.3	4243	tCa/tGa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187541457	187541457	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			244	150	443	0	ENST00000441802.2:c.6283G>T	p.Glu2095Ter	p.E2095*	ENST00000441802	NM_005245.3	2095	Gag/Tag						NEWRECORD																																																																									
PNRC1	10957	MSKCC	GRCh37	6	89791020	89791020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			63	41	21	0	ENST00000336032.3:c.407G>A	p.Gly136Glu	p.G136E	ENST00000336032	NM_006813.2	136	gGa/gAa						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29657472	29657472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			45	78	330	0	ENST00000358273.4:c.5768C>T	p.Thr1923Met	p.T1923M	ENST00000358273	NM_001042492.2	1923	aCg/aTg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	74	105	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56183340	56183340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			216	128	143	0	ENST00000399503.3:c.4250C>T	p.Ala1417Val	p.A1417V	ENST00000399503	NM_005921.1	1417	gCa/gTa						NEWRECORD																																																																									
RAD51C	5889	MSKCC	GRCh37	17	56770018	56770018	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201523760		P-0001473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	29	292	0	ENST00000337432.4:c.14C>T	p.Thr5Met	p.T5M	ENST00000337432	NM_058216.2	5	aCg/aTg						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0000302-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			784	38	229	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0001454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			566	171	377	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0001454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			579	78	292	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576919	7576919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	38	318	0	ENST00000269305.4:c.927delC	p.Asn310ThrfsTer35	p.N310Tfs*35	ENST00000269305	NM_001126112.2	309	ccC/cc						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0001454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	24	288	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	26029153	26029153	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			596	113	402	0	ENST00000435504.4:c.197G>T	p.Gly66Val	p.G66V	ENST00000435504		66	gGt/gTt						NEWRECORD																																																																									
PHOX2B	8929	MSKCC	GRCh37	4	41750471	41750471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	44	301	0	ENST00000226382.2:c.157G>T	p.Ala53Ser	p.A53S	ENST00000226382	NM_003924.3	53	Gcc/Tcc						NEWRECORD																																																																									
FAM175A	84142	MSKCC	GRCh37	4	84391508	84391508	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			275	17	156	0	ENST00000321945.7:c.324G>C	p.Gln108His	p.Q108H	ENST00000321945	NM_139076.2	108	caG/caC						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176637292	176637292	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	40	221	0	ENST00000439151.2:c.1892A>T	p.Lys631Met	p.K631M	ENST00000439151	NM_022455.4	631	aAg/aTg						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43604539	43604539	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs142338976		P-0001454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			518	88	342	0	ENST00000355710.3:c.1124T>A	p.Leu375Gln	p.L375Q	ENST00000355710	NM_020975.4	375	cTg/cAg						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023616	27023616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	54	192	0	ENST00000324856.7:c.722C>T	p.Ser241Phe	p.S241F	ENST00000324856	NM_006015.4	241	tCc/tTc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0004378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	69	351	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000520-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			459	165	380	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55972104	55972104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000520-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			553	174	441	0	ENST00000263923.4:c.1540G>A	p.Val514Ile	p.V514I	ENST00000263923	NM_002253.2	514	Gta/Ata						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000520-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			421	150	448	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70120232	70120232	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000520-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	650	804	0	ENST00000245479.2:c.1234C>T	p.Gln412Ter	p.Q412*	ENST00000245479	NM_000346.3	412	Cag/Tag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175248	112175249	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0000520-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			349	95	329	0	ENST00000257430.4:c.3959_3960delTG	p.Val1320GlufsTer11	p.V1320Efs*11	ENST00000257430	NM_000038.5	1319	ccTGtg/cctg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	259	369	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41729636	41729636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	281	520	0	ENST00000242208.4:c.893G>A	p.Arg298Gln	p.R298Q	ENST00000242208	NM_002192.2	298	cGg/cAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577062	7577062	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	272	428	0	ENST00000269305.4:c.876delA	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	292	aaA/aa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175770	112175773	+	frameshift_variant	Frame_Shift_Del	DEL	GGAA	GGAA	-			P-0004549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	151	293	0	ENST00000257430.4:c.4479_4482del	p.Glu1494ValfsTer12	p.E1494Vfs*12	ENST00000257430	NM_000038.5	1493	acGGAA/ac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002544-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	50	345	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0002544-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	12	364	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115112269	115112270	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0002544-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			53	17	63	0	ENST00000257566.3:c.1470_1471delinsTT	p.Ala491Ser	p.A491S	ENST00000257566	NM_016569.3	490	gcCGcg/gcTTcg						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9928013	9928013	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002544-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			311	69	380	0	ENST00000330684.3:c.1726T>A	p.Phe576Ile	p.F576I	ENST00000330684	NM_001134407.1	576	Ttt/Att						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720805	89720808	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0000131-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			404	274	71	0	ENST00000371953.3:c.956_959delCTTT	p.Thr319LysfsTer24	p.T319Kfs*24	ENST00000371953	NM_000314.4	319	aCTTTa/aa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs68130327		P-0000131-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			918	518	173	0	ENST00000269305.4:c.532delC	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0000610-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			139	107	564	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40979368	40979368	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0000610-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	17	158	0	ENST00000373198.4:c.1765C>G	p.Pro589Ala	p.P589A	ENST00000373198	NM_133170.3	589	Cca/Gca						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112179354	112179354	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000610-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			181	26	460	0	ENST00000257430.4:c.8066delA	p.Lys2689ArgfsTer34	p.K2689Rfs*34	ENST00000257430	NM_000038.5	2688	gAa/ga						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207102	1207102	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	58	380	0	ENST00000326873.7:c.190A>T	p.Lys64Ter	p.K64*	ENST00000326873	NM_000455.4	64	Aag/Tag						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120480549	120480549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	73	433	0	ENST00000256646.2:c.3268C>T	p.Pro1090Ser	p.P1090S	ENST00000256646	NM_024408.3	1090	Cca/Tca						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215617190	215617190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	80	311	0	ENST00000260947.4:c.1658C>T	p.Ser553Leu	p.S553L	ENST00000260947	NM_000465.2	553	tCa/tTa						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55561686	55561686	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	36	192	0	ENST00000288135.5:c.76C>T	p.Gln26Ter	p.Q26*	ENST00000288135	NM_000222.2	26	Caa/Taa						NEWRECORD																																																																									
YAP1	10413	MSKCC	GRCh37	11	102098222	102098222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	40	293	0	ENST00000282441.5:c.1186G>A	p.Glu396Lys	p.E396K	ENST00000282441	NM_001130145.2	396	Gag/Aag						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72828812	72828812	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	121	694	0	ENST00000268489.5:c.7769C>G	p.Ser2590Cys	p.S2590C	ENST00000268489	NM_006885.3	2590	tCt/tGt						NEWRECORD																																																																									
SUZ12	23512	MSKCC	GRCh37	17	30302714	30302714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	20	147	0	ENST00000322652.5:c.805G>A	p.Glu269Lys	p.E269K	ENST00000322652	NM_015355.2	269	Gaa/Aaa						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2202733	2202733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	60	528	0	ENST00000398665.3:c.742G>A	p.Glu248Lys	p.E248K	ENST00000398665	NM_032482.2	248	Gag/Aag						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600420	10600420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	52	488	0	ENST00000171111.5:c.1435G>T	p.Asp479Tyr	p.D479Y	ENST00000171111	NM_203500.1	479	Gac/Tac						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11105605	11105605	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	44	344	0	ENST00000344626.4:c.1521C>G	p.Tyr507Ter	p.Y507*	ENST00000344626	NM_003072.3	507	taC/taG						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42791735	42791735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	51	401	0	ENST00000575354.2:c.621C>A	p.Phe207Leu	p.F207L	ENST00000575354	NM_015125.3	207	ttC/ttA						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47039420	47039422	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	45	261	0	ENST00000329236.7:c.812_814del	p.Ile271_Gln272delinsLys	p.I271_Q272delinsK	ENST00000329236	NM_001204466.1	271	aTCCag/aag						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101904958	101904981	+	inframe_deletion	In_Frame_Del	DEL	CTTCACATGGAGATTGTTGGTACC	CTTCACATGGAGATTGTTGGTACC	-			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	59	306	0	ENST00000374994.4:c.947_970del	p.Leu316_Thr323del	p.L316_T323del	ENST00000374994	NM_004612.2	316	CTTCACATGGAGATTGTTGGTACC/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519980		P-0004459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	40	181	1	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG						NEWRECORD																																																																									
MALT1	10892	MSKCC	GRCh37	18	56363666	56363666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	33	340	2	ENST00000348428.3:c.445C>T	p.Arg149Trp	p.R149W	ENST00000348428	NM_006785.3	149	Cgg/Tgg						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2108780	2108780	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	28	295	1	ENST00000219476.3:c.881G>T	p.Gly294Val	p.G294V	ENST00000219476	NM_000548.3	294	gGa/gTa						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2111969	2111969	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	16	210	0	ENST00000219476.3:c.1217G>C	p.Arg406Thr	p.R406T	ENST00000219476	NM_000548.3	406	aGa/aCa						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49047527	49047527	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587778850		P-0001084-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			450	92	308	0	ENST00000267163.4:c.2520+1G>A		p.X840_splice	ENST00000267163	NM_000321.2	840							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0001084-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	125	407	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001084-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			278	140	347	0	ENST00000171111.5:c.1085G>C	p.Arg362Pro	p.R362P	ENST00000171111	NM_203500.1	362	cGg/cCg						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27092724	27092724	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001084-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	124	286	0	ENST00000324856.7:c.2748delC	p.Asn917IlefsTer2	p.N917Ifs*2	ENST00000324856	NM_006015.4	915	taC/ta						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			353	91	298	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag						NEWRECORD																																																																									
JUN	3725	MSKCC	GRCh37	1	59248055	59248055	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			214	127	181	0	ENST00000371222.2:c.688C>T	p.Gln230Ter	p.Q230*	ENST00000371222	NM_002228.3	230	Cag/Tag						NEWRECORD																																																																									
ERCC3	2071	MSKCC	GRCh37	2	128046371	128046371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			539	29	297	0	ENST00000285398.2:c.892C>T	p.Arg298Trp	p.R298W	ENST00000285398	NM_000122.1	298	Cgg/Tgg						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66535384	66535384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	78	266	0	ENST00000273854.3:c.77C>T	p.Ala26Val	p.A26V	ENST00000273854	NM_004439.5	26	gCg/gTg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173656	112173656	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			370	93	311	0	ENST00000257430.4:c.2365C>T	p.Gln789Ter	p.Q789*	ENST00000257430	NM_000038.5	789	Cag/Tag						NEWRECORD																																																																									
SYK	6850	MSKCC	GRCh37	9	93606319	93606319	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			446	106	396	0	ENST00000375746.1:c.139T>A	p.Tyr47Asn	p.Y47N	ENST00000375746	NM_001174167.1	47	Tac/Aac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0000769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			281	176	446	0	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt						NEWRECORD																																																																									
SRC	6714	MSKCC	GRCh37	20	36031268	36031268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			920	111	467	0	ENST00000358208.4:c.1387C>T	p.Arg463Trp	p.R463W	ENST00000358208		463	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0001289-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	180	189	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001289-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			183	167	205	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0001289-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			172	73	163	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0001289-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	115	256	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	354435	354435	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001289-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			362	106	348	0	ENST00000262320.3:c.1123T>C	p.Tyr375His	p.Y375H	ENST00000262320	NM_003502.3	375	Tac/Cac						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63533093	63533093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001289-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	152	355	0	ENST00000307078.5:c.1801G>A	p.Gly601Ser	p.G601S	ENST00000307078	NM_004655.3	601	Ggc/Agc						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70117870	70117870	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001289-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	131	193	0	ENST00000245479.2:c.338T>C	p.Met113Thr	p.M113T	ENST00000245479	NM_000346.3	113	aTg/aCg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0001289-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			237	196	304	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0001389-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			519	144	785	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0001389-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	182	518	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0001389-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			155	31	160	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56438243	56438243	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001389-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			468	116	443	0	ENST00000407977.2:c.750del	p.Ser251AlafsTer168	p.S251Afs*168	ENST00000407977		250	gcC/gc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	410	407	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0003780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	273	558	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0003780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	168	308	1	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt						NEWRECORD																																																																									
GATA1	2623	MSKCC	GRCh37	X	48649679	48649679	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150572851		P-0003780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	246	581	1	ENST00000376670.3:c.163G>A	p.Ala55Thr	p.A55T	ENST00000376670	NM_002049.3	55	Gct/Act						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175630	112175630	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	146	551	0	ENST00000257430.4:c.4339C>T	p.Gln1447Ter	p.Q1447*	ENST00000257430	NM_000038.5	1447	Caa/Taa						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67655380	67655380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	123	462	1	ENST00000264010.4:c.1243C>T	p.Arg415Trp	p.R415W	ENST00000264010	NM_006565.3	415	Cgg/Tgg						NEWRECORD																																																																									
ERG	2078	MSKCC	GRCh37	21	39775532	39775532	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	182	347	0	ENST00000288319.7:c.488T>C	p.Ile163Thr	p.I163T	ENST00000288319	NM_182918.3	163	aTc/aCc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0000445-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			581	161	379	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA						NEWRECORD																																																																									
RAD54L	8438	MSKCC	GRCh37	1	46739111	46739111	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs372225086		P-0000445-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			860	251	608	0	ENST00000371975.4:c.1460C>G	p.Ser487Cys	p.S487C	ENST00000371975	NM_003579.3	487	tCt/tGt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0002653-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			624	138	301	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc						NEWRECORD																																																																									
DAXX	1616	MSKCC	GRCh37	6	33289545	33289545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002653-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			626	89	295	0	ENST00000374542.5:c.158C>T	p.Ser53Leu	p.S53L	ENST00000374542	NM_001141970.1	53	tCg/tTg						NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50920474	50920474	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	83	235	0	ENST00000440232.2:c.3166A>G	p.Thr1056Ala	p.T1056A	ENST00000440232	NM_002691.3	1056	Acg/Gcg						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36171680	36171682	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0003226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	54	197	0	ENST00000300305.3:c.883_885del	p.Ser295del	p.S295del	ENST00000300305		295	TCT/-						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175934	112175941	+	frameshift_variant	Frame_Shift_Del	DEL	ACCAAGAG	ACCAAGAG	-			P-0003226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	112	196	0	ENST00000257430.4:c.4644_4651del	p.Asn1548LysfsTer8	p.N1548Kfs*8	ENST00000257430	NM_000038.5	1548	aACCAAGAG/a						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931588		P-0000725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			565	41	275	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76939992	76939992	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			451	58	249	0	ENST00000373344.5:c.756G>T	p.Glu252Asp	p.E252D	ENST00000373344	NM_000489.3	252	gaG/gaT						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061223	38061228	+	inframe_deletion	In_Frame_Del	DEL	TCTCGA	TCTCGA	-			P-0000725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			631	306	304	0	ENST00000250448.2:c.761_766del	p.Phe254_Asn256delinsTyr	p.F254_N256delinsY	ENST00000250448	NM_004496.3	254	tTCGAGAac/tac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0003624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	29	216	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	39	215	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0003011-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			584	41	311	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1293457	1293457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003011-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	115	371	0	ENST00000310581.5:c.1544G>A	p.Arg515Gln	p.R515Q	ENST00000310581	NM_198253.2	515	cGg/cAg						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39911539	39911539	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003011-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			354	250	299	0	ENST00000378444.4:c.5091T>A	p.Phe1697Leu	p.F1697L	ENST00000378444	NM_001123385.1	1697	ttT/ttA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578505	7578505	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003011-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	173	369	0	ENST00000269305.4:c.425delC	p.Pro142LeufsTer28	p.P142Lfs*28	ENST00000269305	NM_001126112.2	142	cCt/ct						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0002491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			582	32	271	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0002491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			536	77	335	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579716	7579716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	74	272	0	ENST00000269305.4:c.80delC	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	27	cCt/ct						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001887-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	196	237	0	ENST00000269305.4:c.406C>G	p.Gln136Glu	p.Q136E	ENST00000269305	NM_001126112.2	136	Caa/Gaa						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11300537	11300537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001037-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			991	175	436	0	ENST00000361445.4:c.1609G>A	p.Asp537Asn	p.D537N	ENST00000361445	NM_004958.3	537	Gat/Aat						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66213872	66213872	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772452750		P-0001037-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			597	215	514	0	ENST00000273854.3:c.2558G>A	p.Arg853Gln	p.R853Q	ENST00000273854	NM_004439.5	853	cGa/cAa						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1294327	1294327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001037-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1161	94	147	0	ENST00000310581.5:c.674G>A	p.Gly225Glu	p.G225E	ENST00000310581	NM_198253.2	225	gGg/gAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112177049	112177049	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001037-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			891	57	374	0	ENST00000257430.4:c.5758C>T	p.Arg1920Ter	p.R1920*	ENST00000257430	NM_000038.5	1920	Cga/Tga						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0001037-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			137	2072	226	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat						NEWRECORD																																																																									
KLF4	9314	MSKCC	GRCh37	9	110251451	110251451	+	start_lost,splice_region_variant	Translation_Start_Site	SNP	C	C	T			P-0001037-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			609	170	401	0	ENST00000374672.4:c.3G>A	p.Met1?	p.M1?	ENST00000374672	NM_004235.4	1	atG/atA						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118368773	118368773	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001037-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	88	159	0	ENST00000534358.1:c.5787C>G	p.Ile1929Met	p.I1929M	ENST00000534358	NM_005933.3	1929	atC/atG						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95560263	95560263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001037-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	104	199	0	ENST00000343455.3:c.5326C>T	p.Gln1776Ter	p.Q1776*	ENST00000343455	NM_177438.2	1776	Cag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			667	110	522	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0000744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	16	221	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0000744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			451	34	441	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc						NEWRECORD																																																																									
MITF	4286	MSKCC	GRCh37	3	69928425	69928425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			231	13	198	0	ENST00000352241.4:c.245C>T	p.Ala82Val	p.A82V	ENST00000352241	NM_198159.2	82	gCg/gTg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112136980	112136980	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	31	246	0	ENST00000257430.4:c.734C>A	p.Ser245Ter	p.S245*	ENST00000257430	NM_000038.5	245	tCa/tAa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8733795	8733795	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138127948		P-0000744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	55	367	0	ENST00000356435.5:c.49C>T	p.Arg17Cys	p.R17C	ENST00000356435		17	Cgc/Tgc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			12	241	222	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
PIK3CB	5291	MSKCC	GRCh37	3	138453486	138453486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			195	53	241	0	ENST00000289153.2:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000289153	NM_006219.2	321	cGa/cAa						NEWRECORD																																																																									
RAD54L	8438	MSKCC	GRCh37	1	46743775	46743775	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			70	36	243	0	ENST00000371975.4:c.2065C>G	p.Gln689Glu	p.Q689E	ENST00000371975	NM_003579.3	689	Cag/Gag						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120458033	120458033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			61	39	182	0	ENST00000256646.2:c.7312G>A	p.Asp2438Asn	p.D2438N	ENST00000256646	NM_024408.3	2438	Gat/Aat						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120458315	120458315	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			67	28	147	0	ENST00000256646.2:c.7030G>C	p.Glu2344Gln	p.E2344Q	ENST00000256646	NM_024408.3	2344	Gaa/Caa						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120458519	120458519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			43	31	180	0	ENST00000256646.2:c.6826G>A	p.Glu2276Lys	p.E2276K	ENST00000256646	NM_024408.3	2276	Gag/Aag						NEWRECORD																																																																									
RIT1	6016	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			198	38	249	0	ENST00000368323.3:c.270G>C	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atC						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156844182	156844182	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	32	233	0	ENST00000524377.1:c.1185C>G	p.Phe395Leu	p.F395L	ENST00000524377	NM_002529.3	395	ttC/ttG						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226549764	226549764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	35	190	0	ENST00000366794.5:c.2869G>A	p.Asp957Asn	p.D957N	ENST00000366794	NM_001618.3	957	Gat/Aat						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30715667	30715667	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			8	39	187	0	ENST00000359013.4:c.1400T>A	p.Phe467Tyr	p.F467Y	ENST00000359013	NM_001024847.2	467	tTc/tAc						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142215931	142215931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			169	49	206	0	ENST00000350721.4:c.5662G>A	p.Glu1888Lys	p.E1888K	ENST00000350721	NM_001184.3	1888	Gaa/Aaa						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55561872	55561872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			50	32	241	0	ENST00000288135.5:c.262G>A	p.Glu88Lys	p.E88K	ENST00000288135	NM_000222.2	88	Gaa/Aaa						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106193871	106193871	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			72	57	224	0	ENST00000380013.4:c.4333C>A	p.Gln1445Lys	p.Q1445K	ENST00000380013	NM_001127208.2	1445	Cag/Aag						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70404458	70404458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			67	36	216	0	ENST00000373644.4:c.1972G>C	p.Asp658His	p.D658H	ENST00000373644	NM_030625.2	658	Gat/Cat						NEWRECORD																																																																									
FGF19	9965	MSKCC	GRCh37	11	69514089	69514089	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	37	227	0	ENST00000294312.3:c.592G>C	p.Asp198His	p.D198H	ENST00000294312	NM_005117.2	198	Gac/Cac						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118343271	118343271	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			49	13	233	0	ENST00000534358.1:c.1397C>G	p.Ser466Cys	p.S466C	ENST00000534358	NM_005933.3	466	tCt/tGt						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	420070	420070	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs191475834		P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			77	58	316	0	ENST00000399788.2:c.3197C>T	p.Ser1066Phe	p.S1066F	ENST00000399788	NM_001042603.1	1066	tCt/tTt						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18446951	18446951	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			102	19	176	0	ENST00000266497.5:c.1034+2T>G		p.X345_splice	ENST00000266497		345							NEWRECORD																																																																									
MDM2	4193	MSKCC	GRCh37	12	69218205	69218205	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			72	58	227	0	ENST00000462284.1:c.421C>G	p.Gln141Glu	p.Q141E	ENST00000462284	NM_002392.5	141	Caa/Gaa						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133226002	133226002	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			62	27	254	0	ENST00000320574.5:c.3895G>C	p.Glu1299Gln	p.E1299Q	ENST00000320574	NM_006231.2	1299	Gag/Cag						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28602354	28602354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			53	30	291	0	ENST00000241453.7:c.2014G>A	p.Glu672Lys	p.E672K	ENST00000241453	NM_004119.2	672	Gag/Aag						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28608053	28608053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			47	31	313	0	ENST00000241453.7:c.1913C>T	p.Ser638Leu	p.S638L	ENST00000241453	NM_004119.2	638	tCa/tTa						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110438153	110438153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			15	16	98	0	ENST00000375856.3:c.248G>A	p.Arg83Gln	p.R83Q	ENST00000375856	NM_003749.2	83	cGg/cAg						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105239245	105239245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			38	29	186	0	ENST00000349310.3:c.1142C>T	p.Ser381Leu	p.S381L	ENST00000349310	NM_001014432.1	381	tCa/tTa						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	396845	396845	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			32	19	253	0	ENST00000262320.3:c.181C>G	p.Pro61Ala	p.P61A	ENST00000262320	NM_003502.3	61	Ccg/Gcg						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9916216	9916216	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			61	29	258	1	ENST00000330684.3:c.2073G>C	p.Glu691Asp	p.E691D	ENST00000330684	NM_001134407.1	691	gaG/gaC						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37618395	37618395	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	50	196	0	ENST00000447079.4:c.71C>A	p.Ser24Ter	p.S24*	ENST00000447079	NM_015083.1	24	tCa/tAa						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41242963	41242963	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			91	28	214	0	ENST00000357654.3:c.4183C>G	p.Gln1395Glu	p.Q1395E	ENST00000357654	NM_007294.3	1395	Cag/Gag						NEWRECORD																																																																									
YES1	7525	MSKCC	GRCh37	18	742933	742933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			69	51	280	0	ENST00000314574.4:c.1045G>A	p.Glu349Lys	p.E349K	ENST00000314574	NM_005433.3	349	Gaa/Aaa						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11106991	11106991	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			48	28	261	0	ENST00000344626.4:c.1696G>C	p.Glu566Gln	p.E566Q	ENST00000344626	NM_003072.3	566	Gag/Cag						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39921627	39921627	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			36	33	238	0	ENST00000378444.4:c.4193G>C	p.Arg1398Thr	p.R1398T	ENST00000378444	NM_001123385.1	1398	aGa/aCa						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176562849	176562849	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			61	81	237	0	ENST00000439151.2:c.745del	p.Glu249LysfsTer12	p.E249Kfs*12	ENST00000439151	NM_022455.4	249	Gaa/aa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	1356	367	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0003444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	278	466	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg						NEWRECORD																																																																									
PHOX2B	8929	MSKCC	GRCh37	4	41750437	41750437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	181	314	0	ENST00000226382.2:c.191C>T	p.Ser64Phe	p.S64F	ENST00000226382	NM_003924.3	64	tCc/tTc						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156845320	156845320	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	158	545	0	ENST00000524377.1:c.1363G>C	p.Val455Leu	p.V455L	ENST00000524377	NM_002529.3	455	Gtg/Ctg						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178097307	178097307	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	128	227	0	ENST00000397062.3:c.407C>G	p.Ser136Cys	p.S136C	ENST00000397062	NM_006164.4	136	tCt/tGt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108199889	108199889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	82	292	0	ENST00000278616.4:c.7231G>A	p.Glu2411Lys	p.E2411K	ENST00000278616	NM_000051.3	2411	Gaa/Aaa						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108199922	108199922	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	69	261	0	ENST00000278616.4:c.7264G>C	p.Glu2422Gln	p.E2422Q	ENST00000278616	NM_000051.3	2422	Gag/Cag						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47040911	47040911	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	182	200	0	ENST00000329236.7:c.1207G>T	p.Glu403Ter	p.E403*	ENST00000329236	NM_001204466.1	403	Gag/Tag						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135781057	135781058	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0003444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	303	640	0	ENST00000298552.3:c.1907_1908del	p.Glu636GlyfsTer51	p.E636Gfs*51	ENST00000298552	NM_001162426.1	636	gAG/g						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	411	401	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt						NEWRECORD																																																																									
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	339	239	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	94066446	94066446	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	596	403	0	ENST00000369303.4:c.1313C>A	p.Thr438Asn	p.T438N	ENST00000369303	NM_004440.3	438	aCt/aAt						NEWRECORD																																																																									
FAM46C	54855	MSKCC	GRCh37	1	118166597	118166597	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	137	137	0	ENST00000369448.3:c.1107C>A	p.Ser369Arg	p.S369R	ENST00000369448	NM_017709.3	369	agC/agA						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226576371	226576371	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	240	397	1	ENST00000366794.5:c.703G>T	p.Glu235Ter	p.E235*	ENST00000366794	NM_001618.3	235	Gaa/Taa						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243727024	243727024	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	258	206	0	ENST00000263826.5:c.946G>T	p.Glu316Ter	p.E316*	ENST00000263826	NM_005465.4	316	Gag/Tag						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29449859	29449859	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	407	383	0	ENST00000389048.3:c.2996C>A	p.Pro999His	p.P999H	ENST00000389048	NM_004304.4	999	cCt/cAt						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29519758	29519758	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	261	256	0	ENST00000389048.3:c.1813G>C	p.Asp605His	p.D605H	ENST00000389048	NM_004304.4	605	Gac/Cac						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198281560	198281560	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	209	272	1	ENST00000335508.6:c.571C>T	p.Gln191Ter	p.Q191*	ENST00000335508	NM_012433.2	191	Cag/Tag						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212578260	212578260	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	530	334	0	ENST00000342788.4:c.997G>T	p.Ala333Ser	p.A333S	ENST00000342788	NM_005235.2	333	Gct/Tct						NEWRECORD																																																																									
PDCD1	5133	MSKCC	GRCh37	2	242795126	242795126	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	125	140	0	ENST00000334409.5:c.83C>A	p.Pro28Gln	p.P28Q	ENST00000334409	NM_005018.2	28	cCa/cAa						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142231276	142231276	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	413	311	0	ENST00000350721.4:c.4678G>T	p.Asp1560Tyr	p.D1560Y	ENST00000350721	NM_001184.3	1560	Gat/Tat						NEWRECORD																																																																									
BCL6	604	MSKCC	GRCh37	3	187447214	187447214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	130	191	0	ENST00000232014.4:c.979G>T	p.Gly327Cys	p.G327C	ENST00000232014	NM_001130845.1	327	Ggt/Tgt						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189604182	189604182	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	234	270	0	ENST00000264731.3:c.1350-1G>A		p.X450_splice	ENST00000264731	NM_003722.4	450							NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66467476	66467476	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	363	269	0	ENST00000273854.3:c.793C>G	p.His265Asp	p.H265D	ENST00000273854	NM_004439.5	265	Cat/Gat						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187510091	187510091	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	353	245	0	ENST00000441802.2:c.13422G>T	p.Leu4474Phe	p.L4474F	ENST00000441802	NM_005245.3	4474	ttG/ttT						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180047936	180047936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	197	257	0	ENST00000261937.6:c.2239C>A	p.Leu747Met	p.L747M	ENST00000261937	NM_182925.4	747	Ctg/Atg						NEWRECORD																																																																									
HIST1H3G	8355	MSKCC	GRCh37	6	26271309	26271309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	677	786	0	ENST00000305910.3:c.304G>T	p.Val102Leu	p.V102L	ENST00000305910	NM_003534.2	102	Gtg/Ttg						NEWRECORD																																																																									
HIST1H3H	8357	MSKCC	GRCh37	6	27778179	27778179	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	760	825	3	ENST00000369163.2:c.328C>G	p.Leu110Val	p.L110V	ENST00000369163	NM_003536.2	110	Ctg/Gtg						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	93956509	93956509	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	535	403	2	ENST00000369303.4:c.2726+1G>T		p.X909_splice	ENST00000369303	NM_004440.3	909							NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150004745	150004745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			53	347	233	2	ENST00000253339.5:c.1480A>G	p.Ile494Val	p.I494V	ENST00000253339		494	Att/Gtt						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151860435	151860435	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	526	307	0	ENST00000262189.6:c.10227G>C	p.Glu3409Asp	p.E3409D	ENST00000262189	NM_170606.2	3409	gaG/gaC						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133759848	133759848	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	219	253	0	ENST00000318560.5:c.2171A>G	p.His724Arg	p.H724R	ENST00000318560	NM_005157.4	724	cAt/cGt						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100998680	100998680	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	714	521	2	ENST00000325455.5:c.1122C>A	p.Tyr374Ter	p.Y374*	ENST00000325455	NM_001202474.3	374	taC/taA						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108150312	108150312	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	310	213	0	ENST00000278616.4:c.3379G>T	p.Ala1127Ser	p.A1127S	ENST00000278616	NM_000051.3	1127	Gct/Tct						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18534713	18534713	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	322	204	2	ENST00000266497.5:c.1771G>T	p.Gly591Trp	p.G591W	ENST00000266497		591	Ggg/Tgg						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46246315	46246315	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			74	430	263	0	ENST00000334344.6:c.4409C>A	p.Ser1470Ter	p.S1470*	ENST00000334344	NM_152641.2	1470	tCa/tAa						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49415848	49415848	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	342	292	0	ENST00000301067.7:c.16499G>T	p.Arg5500Leu	p.R5500L	ENST00000301067	NM_003482.3	5500	cGg/cTg						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57861998	57861998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	387	420	0	ENST00000228682.2:c.1299G>T	p.Glu433Asp	p.E433D	ENST00000228682	NM_005269.2	433	gaG/gaT						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9858348	9858348	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			37	187	200	0	ENST00000330684.3:c.3053T>A	p.Val1018Glu	p.V1018E	ENST00000330684	NM_001134407.1	1018	gTg/gAg						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29556073	29556073	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	348	187	0	ENST00000358273.4:c.2440A>T	p.Lys814Ter	p.K814*	ENST00000358273	NM_001042492.2	814	Aag/Tag						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39570424	39570424	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	338	168	0	ENST00000262039.4:c.620G>T	p.Ser207Ile	p.S207I	ENST00000262039	NM_002647.2	207	aGt/aTt						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2191227	2191227	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	215	258	0	ENST00000398665.3:c.481G>T	p.Asp161Tyr	p.D161Y	ENST00000398665	NM_032482.2	161	Gac/Tac						NEWRECORD																																																																									
SRC	6714	MSKCC	GRCh37	20	36026137	36026137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	125	345	1	ENST00000358208.4:c.739G>T	p.Val247Leu	p.V247L	ENST00000358208		247	Gtg/Ttg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40864893	40864893	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	406	273	0	ENST00000373198.4:c.2375A>T	p.Asn792Ile	p.N792I	ENST00000373198	NM_133170.3	792	aAt/aTt						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41306757	41306757	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	220	180	0	ENST00000373198.4:c.902G>C	p.Gly301Ala	p.G301A	ENST00000373198	NM_133170.3	301	gGg/gCg						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142242903	142242904	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	419	359	0	ENST00000350721.4:c.4083_4084delinsTT	p.Leu1361_Gly1362delinsPheTrp	p.L1361_G1362delinsFW	ENST00000350721	NM_001184.3	1361	ttGGgg/ttTTgg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0002871-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	14	192	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30732963	30732963	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002871-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			532	32	269	0	ENST00000359013.4:c.1651G>C	p.Glu551Gln	p.E551Q	ENST00000359013	NM_001024847.2	551	Gag/Cag						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151860573	151860573	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002871-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			642	34	453	0	ENST00000262189.6:c.10089T>G	p.Cys3363Trp	p.C3363W	ENST00000262189	NM_170606.2	3363	tgT/tgG						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419938	152419938	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001715-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			975	55	449	0	ENST00000206249.3:c.1625A>G	p.Glu542Gly	p.E542G	ENST00000206249	NM_000125.3	542	gAg/gGg						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38966777	38966780	+	frameshift_variant	Frame_Shift_Del	DEL	CTAA	CTAA	-			P-0001715-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1051	259	454	0	ENST00000357387.3:c.1262_1265del	p.Val421GlufsTer6	p.V421Efs*6	ENST00000357387	NM_152756.3	421	gTTAGa/ga						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0002379-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	18	636	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95572456	95572456	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002379-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			807	44	576	0	ENST00000343455.3:c.2909A>C	p.Glu970Ala	p.E970A	ENST00000343455	NM_177438.2	970	gAa/gCa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0002379-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			444	161	438	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	65	319	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3R3	8503	MSKCC	GRCh37	1	46546404	46546404	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	96	326	0	ENST00000262741.5:c.125C>G	p.Pro42Arg	p.P42R	ENST00000262741	NM_003629.3	42	cCt/cGt						NEWRECORD																																																																									
MAP2K1	5604	MSKCC	GRCh37	15	66737006	66737006	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	89	275	0	ENST00000307102.5:c.529C>G	p.Leu177Val	p.L177V	ENST00000307102	NM_002755.3	177	Ctg/Gtg						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42795414	42795438	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCCCCAGCAGCTTCAGGTGGCAC	CTGCCCCAGCAGCTTCAGGTGGCAC	-			P-0004207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	53	147	0	ENST00000575354.2:c.2505_2529del	p.Gln835HisfsTer81	p.Q835Hfs*81	ENST00000575354	NM_015125.3	832	CTGCCCCAGCAGCTTCAGGTGGCACct/ct						NEWRECORD																																																																									
NKX2-1	7080	MSKCC	GRCh37	14	36986870	36986886	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGGTGCCCCCGCCGC	CCCGGTGCCCCCGCCGC	-			P-0004207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	47	106	0	ENST00000354822.5:c.803_819del	p.Gly268ValfsTer165	p.G268Vfs*165	ENST00000354822	NM_001079668.2	268	gGCGGCGGGGGCACCGGG/g						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000208-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1133	192	575	0	ENST00000361445.4:c.6644C>T	p.Ser2215Phe	p.S2215F	ENST00000361445	NM_004958.3	2215	tCt/tTt						NEWRECORD																																																																									
PIK3R3	8503	MSKCC	GRCh37	1	46509386	46509386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000208-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1000	204	472	0	ENST00000262741.5:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000262741	NM_003629.3	449	Gcc/Acc						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0003572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	218	309	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577541	7577541	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	322	229	1	ENST00000269305.4:c.740A>T	p.Asn247Ile	p.N247I	ENST00000269305	NM_001126112.2	247	aAc/aTc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	233	321	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0003572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	192	323	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974687	21974687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	92	332	0	ENST00000304494.5:c.140G>T	p.Arg47Met	p.R47M	ENST00000304494	NM_000077.4	47	aGg/aTg						NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056100	26056100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	32	292	0	ENST00000343677.2:c.557C>T	p.Ala186Val	p.A186V	ENST00000343677	NM_005319.3	186	gCc/gTc						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23625374	23625374	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	67	519	0	ENST00000261584.4:c.3152T>C	p.Ile1051Thr	p.I1051T	ENST00000261584	NM_024675.3	1051	aTt/aCt						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5231375	5231375	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	20	396	0	ENST00000357368.4:c.2101G>C	p.Glu701Gln	p.E701Q	ENST00000357368	NM_002850.3	701	Gag/Cag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000706-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			544	103	352	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000706-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			351	23	402	1	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18435655	18435655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000691-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			82	16	167	0	ENST00000266497.5:c.640C>T	p.Pro214Ser	p.P214S	ENST00000266497		214	Ccc/Tcc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	21	336	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			25	13	296	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0003136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			28	11	332	1	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36252866	36252866	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	11	309	0	ENST00000300305.3:c.496C>T	p.Arg166Ter	p.R166*	ENST00000300305		166	Cga/Tga						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41513732	41513732	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	18	297	0	ENST00000263253.7:c.636G>T	p.Met212Ile	p.M212I	ENST00000263253	NM_001429.3	212	atG/atT						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0002861-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			785	1264	299	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0002861-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			554	62	289	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120462174	120462174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002861-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			645	37	296	0	ENST00000256646.2:c.5542G>A	p.Asp1848Asn	p.D1848N	ENST00000256646	NM_024408.3	1848	Gat/Aat						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9858231	9858231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002861-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			816	49	401	0	ENST00000330684.3:c.3170C>T	p.Ala1057Val	p.A1057V	ENST00000330684	NM_001134407.1	1057	gCc/gTc						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9858769	9858769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002861-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			530	29	236	0	ENST00000330684.3:c.2632G>A	p.Glu878Lys	p.E878K	ENST00000330684	NM_001134407.1	878	Gaa/Aaa						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001986-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	136	321	0	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag						NEWRECORD																																																																									
MSH2	4436	MSKCC	GRCh37	2	47705619	47705619	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001986-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			314	170	350	0	ENST00000233146.2:c.2419A>G	p.Thr807Ala	p.T807A	ENST00000233146	NM_000251.2	807	Act/Gct						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	427271	427271	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0001986-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	65	250	0	ENST00000399788.2:c.2897+1G>T		p.X966_splice	ENST00000399788	NM_001042603.1	966							NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103514410	103514410	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001986-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	93	285	0	ENST00000355739.4:c.911A>T	p.Asp304Val	p.D304V	ENST00000355739	NM_000123.3	304	gAt/gTt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610073	10610073	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0001986-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			234	145	378	0	ENST00000171111.5:c.637G>T	p.Glu213Ter	p.E213*	ENST00000171111	NM_203500.1	213	Gag/Tag						NEWRECORD																																																																									
EIF1AX	1964	MSKCC	GRCh37	X	20152120	20152120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001986-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	104	422	0	ENST00000379607.5:c.210G>T	p.Trp70Cys	p.W70C	ENST00000379607	NM_001412.3	70	tgG/tgT						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53241084	53241084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001986-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	111	437	0	ENST00000375401.3:c.1127G>T	p.Cys376Phe	p.C376F	ENST00000375401	NM_004187.3	376	tGt/tTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577585	7577590	+	inframe_deletion	In_Frame_Del	DEL	GATGGT	GATGGT	-			P-0001986-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	61	264	0	ENST00000269305.4:c.691_696del	p.Thr231_Ile232del	p.T231_I232del	ENST00000269305	NM_001126112.2	231	ACCATC/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0002814-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	105	411	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc						NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209113265	209113265	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002814-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	34	562	1	ENST00000345146.2:c.242A>G	p.Lys81Arg	p.K81R	ENST00000345146	NM_005896.2	81	aAg/aGg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002814-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			206	60	474	0	ENST00000256078.4:c.436G>C	p.Ala146Pro	p.A146P	ENST00000256078	NM_033360.2	146	Gca/Cca						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001762-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			410	141	503	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86658435	86658435	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001762-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			560	37	516	0	ENST00000274376.6:c.1400C>G	p.Thr467Arg	p.T467R	ENST00000274376	NM_002890.2	467	aCa/aGa						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17955108	17955108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56384680		P-0001762-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			352	113	460	0	ENST00000458235.1:c.119G>A	p.Arg40His	p.R40H	ENST00000458235	NM_000215.3	40	cGc/cAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576913	7576941	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTGTTGGGCAGTGCTAGGAAAGAGGCAA	GTTGTTGGGCAGTGCTAGGAAAGAGGCAA	-			P-0001762-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			197	43	514	0	ENST00000269305.4:c.920-15_933del		p.X307_splice	ENST00000269305	NM_001126112.2	307							NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0004169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	438	139	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67575432	67575432	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0004169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	73	155	0	ENST00000274335.5:c.505A>G	p.Thr169Ala	p.T169A	ENST00000274335		169	Aca/Gca						NEWRECORD																																																																									
FOXO1	2308	MSKCC	GRCh37	13	41134571	41134571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	116	353	1	ENST00000379561.5:c.1057G>T	p.Ala353Ser	p.A353S	ENST00000379561	NM_002015.3	353	Gca/Tca						NEWRECORD																																																																									
STAT5B	6777	MSKCC	GRCh37	17	40354416	40354416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	140	443	0	ENST00000293328.3:c.2179G>T	p.Asp727Tyr	p.D727Y	ENST00000293328	NM_012448.3	727	Gac/Tac						NEWRECORD																																																																									
CEBPA	1050	MSKCC	GRCh37	19	33792782	33792782	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	17	58	0	ENST00000498907.2:c.539C>G	p.Pro180Arg	p.P180R	ENST00000498907	NM_004364.3	180	cCt/cGt						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40710608	40710608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	58	131	0	ENST00000373198.4:c.4243G>A	p.Glu1415Lys	p.E1415K	ENST00000373198	NM_133170.3	1415	Gag/Aag						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47044886	47044889	+	frameshift_variant	Frame_Shift_Del	DEL	AGTG	AGTG	-			P-0004169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	68	163	1	ENST00000329236.7:c.1980_1983del	p.Ser660ArgfsTer63	p.S660Rfs*63	ENST00000329236	NM_001204466.1	660	AGTGag/ag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002752-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			74	19	443	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577560	7577560	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057520002		P-0002752-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			67	16	350	0	ENST00000269305.4:c.721T>C	p.Ser241Pro	p.S241P	ENST00000269305	NM_001126112.2	241	Tcc/Ccc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27100829	27100829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002752-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			83	30	434	0	ENST00000324856.7:c.4111C>T	p.Arg1371Trp	p.R1371W	ENST00000324856	NM_006015.4	1371	Cgg/Tgg						NEWRECORD																																																																									
PMS1	5378	MSKCC	GRCh37	2	190656591	190656591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002752-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			85	21	459	0	ENST00000441310.2:c.56C>T	p.Thr19Ile	p.T19I	ENST00000441310	NM_000534.4	19	aCt/aTt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175288	112175288	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002752-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			54	60	366	0	ENST00000257430.4:c.3997A>T	p.Lys1333Ter	p.K1333*	ENST00000257430	NM_000038.5	1333	Aaa/Taa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	187	468	0	ENST00000269305.4:c.403delT	p.Cys135AlafsTer35	p.C135Afs*35	ENST00000269305	NM_001126112.2	135	Tgc/gc						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157469967	157469967	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			593	213	485	0	ENST00000346085.5:c.2761C>A	p.Pro921Thr	p.P921T	ENST00000346085	NM_020732.3	921	Cct/Act						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123224772	123224772	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1039	229	769	1	ENST00000218089.9:c.3536C>A	p.Ala1179Glu	p.A1179E	ENST00000218089	NM_001042749.1	1179	gCa/gAa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0000913-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1106	717	210	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000913-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			898	360	315	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa						NEWRECORD																																																																									
IL10	3586	MSKCC	GRCh37	1	206944329	206944329	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000913-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1214	177	233	0	ENST00000423557.1:c.301C>T	p.Gln101Ter	p.Q101*	ENST00000423557	NM_000572.2	101	Caa/Taa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8404581	8404581	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000913-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			777	149	275	0	ENST00000356435.5:c.4166T>G	p.Val1389Gly	p.V1389G	ENST00000356435		1389	gTa/gGa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			362	106	291	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8518099	8518099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1334	248	663	1	ENST00000356435.5:c.1292C>T	p.Ser431Leu	p.S431L	ENST00000356435		431	tCg/tTg						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110437616	110437616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	228	436	0	ENST00000375856.3:c.785C>T	p.Ser262Leu	p.S262L	ENST00000375856	NM_003749.2	262	tCg/tTg						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1081	391	872	0	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23647416	23647417	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	AA			P-0001021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1059	225	827	0	ENST00000261584.4:c.450_451delinsTT	p.Gln150_Gln151delinsHisTer	p.Q150_Q151delinsH*	ENST00000261584	NM_024675.3	150	caGCag/caTTag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	143	370	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0004369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	221	205	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128845224	128845224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	188	212	1	ENST00000249373.3:c.718G>A	p.Val240Ile	p.V240I	ENST00000249373	NM_005631.4	240	Gtc/Atc						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5244311	5244311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	193	455	0	ENST00000357368.4:c.1171G>A	p.Gly391Ser	p.G391S	ENST00000357368	NM_002850.3	391	Ggc/Agc						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157099799	157099799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000483-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			277	16	242	0	ENST00000346085.5:c.736G>A	p.Gly246Ser	p.G246S	ENST00000346085	NM_020732.3	246	Ggc/Agc						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70405998	70405998	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000483-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			732	72	471	0	ENST00000373644.4:c.3512A>T	p.Asn1171Ile	p.N1171I	ENST00000373644	NM_030625.2	1171	aAt/aTt						NEWRECORD																																																																									
CDKN1B	1027	MSKCC	GRCh37	12	12871790	12871799	+	frameshift_variant	Frame_Shift_Del	DEL	AACAGAAGAA	AACAGAAGAA	-			P-0000483-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			597	95	230	0	ENST00000228872.4:c.509_518delCAGAAGAAAA	p.Thr170MetfsTer52	p.T170Mfs*52	ENST00000228872	NM_004064.3	169	agAACAGAAGAA/ag						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0003301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	38	165	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175360	112175360	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	28	257	0	ENST00000257430.4:c.4069G>T	p.Gly1357Ter	p.G1357*	ENST00000257430	NM_000038.5	1357	Gga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0003301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	69	340	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
MITF	4286	MSKCC	GRCh37	3	70014355	70014355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1249	67	650	0	ENST00000352241.4:c.1519C>T	p.Arg507Trp	p.R507W	ENST00000352241	NM_198159.2	507	Cgg/Tgg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	199	384	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2972201	2972201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	90	227	0	ENST00000396946.4:c.1538C>T	p.Pro513Leu	p.P513L	ENST00000396946	NM_032415.4	513	cCc/cTc						NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103514940	103514940	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	96	199	0	ENST00000355739.4:c.1441G>T	p.Val481Leu	p.V481L	ENST00000355739	NM_000123.3	481	Gtg/Ttg						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610227	10610227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	214	615	0	ENST00000171111.5:c.483G>T	p.Met161Ile	p.M161I	ENST00000171111	NM_203500.1	161	atG/atT						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221321	1221322	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0004110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	156	356	0	ENST00000326873.7:c.848_849del	p.Ser283Ter	p.S283*	ENST00000326873	NM_000455.4	282	CTc/c						NEWRECORD																																																																									
INHA	3623	MSKCC	GRCh37	2	220437220	220437220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	29	511	2	ENST00000243786.2:c.124G>T	p.Gly42Trp	p.G42W	ENST00000243786	NM_002191.3	42	Ggg/Tgg						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66213771	66213771	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	42	254	0	ENST00000273854.3:c.2658+1G>T		p.X886_splice	ENST00000273854	NM_004439.5	886							NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143066999	143066999	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	72	319	0	ENST00000262992.4:c.1714C>G	p.Pro572Ala	p.P572A	ENST00000262992	NM_001101669.1	572	Cca/Gca						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	93953201	93953201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	34	484	0	ENST00000369303.4:c.2940C>A	p.Ser980Arg	p.S980R	ENST00000369303	NM_004440.3	980	agC/agA						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2968283	2968283	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	33	314	0	ENST00000396946.4:c.1703C>A	p.Pro568Gln	p.P568Q	ENST00000396946	NM_032415.4	568	cCg/cAg						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8528735	8528735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	23	258	0	ENST00000356435.5:c.397C>A	p.Gln133Lys	p.Q133K	ENST00000356435		133	Cag/Aag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	27	328	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46243484	46243484	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	48	302	0	ENST00000334344.6:c.1837C>T	p.Gln613Ter	p.Q613*	ENST00000334344	NM_152641.2	613	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	27	176	1	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16040679	16040679	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	41	369	0	ENST00000268712.3:c.1455G>C	p.Glu485Asp	p.E485D	ENST00000268712	NM_006311.3	485	gaG/gaC						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16040727	16040727	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	26	254	0	ENST00000268712.3:c.1408-1G>C		p.X470_splice	ENST00000268712	NM_006311.3	470							NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29486028	29486028	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	21	184	0	ENST00000358273.4:c.205A>G	p.Arg69Gly	p.R69G	ENST00000358273	NM_001042492.2	69	Aga/Gga						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31022668	31022668	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	28	298	0	ENST00000375687.4:c.2153G>T	p.Arg718Ile	p.R718I	ENST00000375687	NM_015338.5	718	aGa/aTa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0001469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	152	169	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0001469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			560	234	225	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66467437	66467437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	165	146	0	ENST00000273854.3:c.832G>A	p.Ala278Thr	p.A278T	ENST00000273854	NM_004439.5	278	Gcc/Acc						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	10274210	10274210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			221	102	110	0	ENST00000330684.3:c.59G>T	p.Gly20Val	p.G20V	ENST00000330684	NM_001134407.1	20	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			140	217	131	1	ENST00000269305.4:c.537T>G	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caG						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0001469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			241	73	78	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52437206	52437206	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35448940		P-0003504-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			576	127	445	0	ENST00000460680.1:c.1838C>T	p.Thr613Met	p.T613M	ENST00000460680	NM_004656.3	613	aCg/aTg						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003504-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			224	57	188	0	ENST00000250448.2:c.781C>A	p.Arg261Ser	p.R261S	ENST00000250448	NM_004496.3	261	Cgc/Agc						NEWRECORD																																																																									
BBC3	27113	MSKCC	GRCh37	19	47731631	47731631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003504-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			69	32	61	0	ENST00000449228.1:c.161G>A	p.Arg54Gln	p.R54Q	ENST00000449228	NM_001127240.2	54	cGa/cAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0000869-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			301	421	418	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212295723	212295723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000869-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	121	407	0	ENST00000342788.4:c.2590C>A	p.Leu864Ile	p.L864I	ENST00000342788	NM_005235.2	864	Cta/Ata						NEWRECORD																																																																									
MITF	4286	MSKCC	GRCh37	3	69987120	69987120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000869-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			587	137	305	0	ENST00000352241.4:c.502G>T	p.Val168Phe	p.V168F	ENST00000352241	NM_198159.2	168	Gtc/Ttc						NEWRECORD																																																																									
GATA2	2624	MSKCC	GRCh37	3	128205020	128205020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000869-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	114	216	0	ENST00000341105.2:c.421T>C	p.Tyr141His	p.Y141H	ENST00000341105	NM_032638.4	141	Tac/Cac						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916860	178916862	+	missense_variant	Missense_Mutation	ONP	TTT	TTT	AAG			P-0000869-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	133	406	0	ENST00000263967.3:c.247_249delinsAAG	p.Phe83Lys	p.F83K	ENST00000263967	NM_006218.2	83	TTT/AAG						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187525719	187525719	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001202-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	142	424	0	ENST00000441802.2:c.10360C>G	p.Pro3454Ala	p.P3454A	ENST00000441802	NM_005245.3	3454	Cca/Gca						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91292632	91292632	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001202-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	188	433	0	ENST00000355112.3:c.134A>G	p.Asn45Ser	p.N45S	ENST00000355112	NM_000057.2	45	aAc/aGc						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001202-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			175	178	426	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151856060	151856060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	83	388	0	ENST00000262189.6:c.11558G>A	p.Arg3853Gln	p.R3853Q	ENST00000262189	NM_170606.2	3853	cGg/cAg						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8492966	8492966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	12	156	0	ENST00000356435.5:c.2363C>T	p.Ser788Phe	p.S788F	ENST00000356435		788	tCt/tTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0000231-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			698	46	289	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001183-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			77	247	533	0	ENST00000269305.4:c.823T>C	p.Cys275Arg	p.C275R	ENST00000269305	NM_001126112.2	275	Tgt/Cgt						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153245429	153245429	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001183-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			335	95	475	0	ENST00000281708.4:c.1762G>T	p.Glu588Ter	p.E588*	ENST00000281708	NM_033632.3	588	Gaa/Taa						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38967279	38967279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001183-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	201	401	0	ENST00000357387.3:c.1202G>A	p.Arg401His	p.R401H	ENST00000357387	NM_152756.3	401	cGt/cAt						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59861749	59861749	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001183-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			423	60	523	0	ENST00000259008.2:c.1510A>T	p.Ile504Phe	p.I504F	ENST00000259008	NM_032043.2	504	Atc/Ttc						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39922166	39922166	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001183-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			94	94	733	1	ENST00000378444.4:c.4006G>C	p.Asp1336His	p.D1336H	ENST00000378444	NM_001123385.1	1336	Gac/Cac						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178928072	178928098	+	inframe_deletion	In_Frame_Del	DEL	TGGATTAGAAGATTTGCTGAACCCTAT	TGGATTAGAAGATTTGCTGAACCCTAT	-			P-0001183-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	27	380	0	ENST00000263967.3:c.1353_1379del	p.Leu452_Gly460del	p.L452_G460del	ENST00000263967	NM_006218.2	450	caTGGATTAGAAGATTTGCTGAACCCTATt/cat						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0000772-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			277	51	229	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
FAM175A	84142	MSKCC	GRCh37	4	84403395	84403395	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0000772-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			677	46	312	0	ENST00000321945.7:c.90A>C	p.Glu30Asp	p.E30D	ENST00000321945	NM_139076.2	30	gaA/gaC						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175118	112175118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000772-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			475	44	185	0	ENST00000257430.4:c.3827C>A	p.Ser1276Ter	p.S1276*	ENST00000257430	NM_000038.5	1276	tCa/tAa						NEWRECORD																																																																									
PRDM1	639	MSKCC	GRCh37	6	106553440	106553440	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000772-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			268	24	143	0	ENST00000369096.4:c.1405T>C	p.Ser469Pro	p.S469P	ENST00000369096	NM_001198.3	469	Tcg/Ccg						NEWRECORD																																																																									
FGFR1	2260	MSKCC	GRCh37	8	38273419	38273419	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000772-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			657	44	501	0	ENST00000425967.3:c.1916C>A	p.Ala639Asp	p.A639D	ENST00000425967	NM_001174067.1	639	gCc/gAc						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720837	89720837	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0000772-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			458	75	196	0	ENST00000371953.3:c.988A>T	p.Lys330Ter	p.K330*	ENST00000371953	NM_000314.4	330	Aaa/Taa						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29509612	29509612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000772-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			659	87	368	0	ENST00000358273.4:c.817C>T	p.Leu273Phe	p.L273F	ENST00000358273	NM_001042492.2	273	Ctc/Ttc						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15302827	15302827	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000772-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			234	23	231	0	ENST00000263388.2:c.623A>C	p.Asn208Thr	p.N208T	ENST00000263388	NM_000435.2	208	aAc/aCc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175595	112175595	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000772-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			848	110	409	0	ENST00000257430.4:c.4304del	p.Arg1435LysfsTer38	p.R1435Kfs*38	ENST00000257430	NM_000038.5	1435	aGa/aa						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66201776	66201776	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	212	249	0	ENST00000273854.3:c.2726A>T	p.Gln909Leu	p.Q909L	ENST00000273854	NM_004439.5	909	cAg/cTg						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57865281	57865281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	243	369	0	ENST00000228682.2:c.2758G>A	p.Ala920Thr	p.A920T	ENST00000228682	NM_005269.2	920	Gcc/Acc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112103004	112103252	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCTATGGGTTCATTTCCAAGAAGAGGGTTTGTAAATGGAAGCAGAGAAAGTACTGGATATTTAGAAGAACTTGAGAAAGAGAGGTAACTTTTCTTCATATAGTAAACATTGCCTTGTGTACTCCAGTTTATTGTTATTTTGTAATATAATATTTAAATTGTGAATTTATAGTAGGTGATAGCTAACACTTAGAGCATTTTGCATTTTTAAACTCAAAGATAGCATGTTATTGATTGCACTTACATTAA	TCCTATGGGTTCATTTCCAAGAAGAGGGTTTGTAAATGGAAGCAGAGAAAGTACTGGATATTTAGAAGAACTTGAGAAAGAGAGGTAACTTTTCTTCATATAGTAAACATTGCCTTGTGTACTCCAGTTTATTGTTATTTTGTAATATAATATTTAAATTGTGAATTTATAGTAGGTGATAGCTAACACTTAGAGCATTTTGCATTTTTAAACTCAAAGATAGCATGTTATTGATTGCACTTACATTAA	-			P-0003758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	105	233	0	ENST00000257430.4:c.339_422+165del		p.X113_splice	ENST00000257430	NM_000038.5	113							NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48954366	48954366	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			37	277	165	0	ENST00000267163.4:c.1488del	p.Thr497HisfsTer22	p.T497Hfs*22	ENST00000267163	NM_000321.2	496	gCc/gc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0002949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			715	16	399	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47028895	47028895	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0002949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	11	108	0	ENST00000329236.7:c.199G>T	p.Glu67Ter	p.E67*	ENST00000329236	NM_001204466.1	67	Gag/Tag						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37657655	37657655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001407-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			286	143	832	1	ENST00000447079.4:c.2572C>T	p.Arg858Trp	p.R858W	ENST00000447079	NM_015083.1	858	Cgg/Tgg						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37673732	37673734	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0001407-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			522	106	837	0	ENST00000447079.4:c.2887_2889del	p.Val963del	p.V963del	ENST00000447079	NM_015083.1	962	gaTGTt/gat						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41275757	41275757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			783	183	301	0	ENST00000349496.5:c.1652C>A	p.Thr551Lys	p.T551K	ENST00000349496	NM_001904.3	551	aCg/aAg						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52441448	52441448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			728	270	417	0	ENST00000460680.1:c.404C>T	p.Pro135Leu	p.P135L	ENST00000460680	NM_004656.3	135	cCg/cTg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938900	178938900	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			143	72	68	0	ENST00000263967.3:c.2142C>A	p.Asn714Lys	p.N714K	ENST00000263967	NM_006218.2	714	aaC/aaA						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149503838	149503838	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			615	212	474	0	ENST00000261799.4:c.1998C>A	p.Asn666Lys	p.N666K	ENST00000261799	NM_002609.3	666	aaC/aaA						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508491	106508491	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			60	66	87	0	ENST00000359195.3:c.485T>C	p.Val162Ala	p.V162A	ENST00000359195	NM_002649.2	162	gTc/gCc						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55370913	55370913	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			619	124	300	0	ENST00000297316.4:c.215T>A	p.Met72Lys	p.M72K	ENST00000297316	NM_022454.3	72	aTg/aAg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692911	89692911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			134	173	266	0	ENST00000371953.3:c.395G>T	p.Gly132Val	p.G132V	ENST00000371953	NM_000314.4	132	gGt/gTt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49448143	49448143	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	346	355	0	ENST00000301067.7:c.457G>T	p.Glu153Ter	p.E153*	ENST00000301067	NM_003482.3	153	Gag/Tag						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857910	9857910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			555	370	368	0	ENST00000330684.3:c.3491C>T	p.Thr1164Met	p.T1164M	ENST00000330684	NM_001134407.1	1164	aCg/aTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0001426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	437	441	0	ENST00000269305.4:c.96+1G>A		p.X32_splice	ENST00000269305	NM_001126112.2	32							NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66467911	66467922	+	inframe_deletion	In_Frame_Del	DEL	TGGAGATCCAAC	TGGAGATCCAAC	-			P-0001426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			642	307	388	0	ENST00000273854.3:c.347_358del	p.Ser116_Ser119del	p.S116_S119del	ENST00000273854	NM_004439.5	116	aGTTGGATCTCCAat/aat						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061010	38061031	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGGGCCGGCGCGCCCTCTAG	CGGGGGCCGGCGCGCCCTCTAG	-			P-0001426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			193	85	219	0	ENST00000250448.2:c.958_979del	p.Leu320GlyfsTer23	p.L320Gfs*23	ENST00000250448	NM_004496.3	320	CTAGAGGGCGCGCCGGCCCCCGgg/gg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	74	169	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	201	281	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg						NEWRECORD																																																																									
ERCC2	2068	MSKCC	GRCh37	19	45867687	45867687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	135	334	0	ENST00000391945.4:c.713A>G	p.Asn238Ser	p.N238S	ENST00000391945	NM_000400.3	238	aAc/aGc						NEWRECORD																																																																									
HIST1H2BD	3017	MSKCC	GRCh37	6	26158456	26158456	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62623440		P-0003179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	252	310	0	ENST00000289316.2:c.59C>T	p.Thr20Ile	p.T20I	ENST00000289316	NM_138720.2	20	aCt/aTt						NEWRECORD																																																																									
SYK	6850	MSKCC	GRCh37	9	93640003	93640003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	45	291	0	ENST00000375746.1:c.1332G>A	p.Trp444Ter	p.W444*	ENST00000375746	NM_001174167.1	444	tgG/tgA						NEWRECORD																																																																									
FOXO1	2308	MSKCC	GRCh37	13	41134043	41134043	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	118	613	0	ENST00000379561.5:c.1585C>T	p.Gln529Ter	p.Q529*	ENST00000379561	NM_002015.3	529	Cag/Tag						NEWRECORD																																																																									
MAPK3	5595	MSKCC	GRCh37	16	30129396	30129396	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	263	482	1	ENST00000263025.4:c.632G>C	p.Arg211Pro	p.R211P	ENST00000263025	NM_002746.2	211	cGg/cCg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576888	7576888	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0003179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	218	294	0	ENST00000269305.4:c.958A>T	p.Lys320Ter	p.K320*	ENST00000269305	NM_001126112.2	320	Aag/Tag						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116397792	116397792	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002289-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1030	114	815	1	ENST00000397752.3:c.2066A>T	p.His689Leu	p.H689L	ENST00000397752	NM_000245.2	689	cAc/cTc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8340407	8340407	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201651279		P-0002289-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			629	75	623	0	ENST00000356435.5:c.5189G>A	p.Arg1730Gln	p.R1730Q	ENST00000356435		1730	cGg/cAg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40713386	40713386	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002289-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			495	60	542	0	ENST00000373198.4:c.4129C>G	p.Arg1377Gly	p.R1377G	ENST00000373198	NM_133170.3	1377	Cga/Gga						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0001990-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			446	96	229	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001990-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			228	205	276	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0001990-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	192	267	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59793361	59793361	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001990-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			603	158	388	0	ENST00000259008.2:c.2443C>T	p.Gln815Ter	p.Q815*	ENST00000259008	NM_032043.2	815	Cag/Tag						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53245058	53245058	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001990-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			362	283	390	0	ENST00000375401.3:c.882C>G	p.Ser294Arg	p.S294R	ENST00000375401	NM_004187.3	294	agC/agG						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002880-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	118	284	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27105679	27105679	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			156	128	340	0	ENST00000324856.7:c.5290G>T	p.Glu1764Ter	p.E1764*	ENST00000324856	NM_006015.4	1764	Gaa/Taa						NEWRECORD																																																																									
FAM46C	54855	MSKCC	GRCh37	1	118166241	118166241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			314	56	334	0	ENST00000369448.3:c.751C>T	p.Leu251Phe	p.L251F	ENST00000369448	NM_017709.3	251	Ctt/Ttt						NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48027086	48027086	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0000517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	173	414	0	ENST00000234420.5:c.1964T>A	p.Leu655Ter	p.L655*	ENST00000234420	NM_000179.2	655	tTa/tAa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8504308	8504308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			696	192	417	0	ENST00000356435.5:c.1775G>A	p.Gly592Asp	p.G592D	ENST00000356435		592	gGc/gAc						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56482611	56482611	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	159	473	0	ENST00000267101.3:c.1068G>T	p.Lys356Asn	p.K356N	ENST00000267101	NM_001982.3	356	aaG/aaT						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68845625	68845625	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	88	454	0	ENST00000261769.5:c.871G>T	p.Asp291Tyr	p.D291Y	ENST00000261769	NM_004360.3	291	Gat/Tat						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0000517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			49	322	444	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga						NEWRECORD																																																																									
RPTOR	57521	MSKCC	GRCh37	17	78923303	78923303	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	125	459	0	ENST00000306801.3:c.3326T>A	p.Val1109Glu	p.V1109E	ENST00000306801	NM_020761.2	1109	gTg/gAg						NEWRECORD																																																																									
TOP1	7150	MSKCC	GRCh37	20	39713159	39713159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			592	73	217	0	ENST00000361337.2:c.565G>A	p.Asp189Asn	p.D189N	ENST00000361337	NM_003286.2	189	Gat/Aat						NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52716210	52716215	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTCGGT	CTCGGT	-			P-0000517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	34	354	0	ENST00000322088.6:c.654_659delCTCGGT	p.Asp218_Val220delinsGlu	p.D218_V220delinsE	ENST00000322088	NM_014225.5	218	gaCTCGGTg/gag						NEWRECORD																																																																									
FGFR4	2264	MSKCC	GRCh37	5	176520239	176520240	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0000517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			29	96	326	0	ENST00000292408.4:c.1158_1159delGGinsC	p.Ala387ProfsTer64	p.A387Pfs*64	ENST00000292408	NM_213647.1	386	ctGGcc/ctCcc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	12	140	2	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68857508	68857508	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	55	195	0	ENST00000261769.5:c.2143G>T	p.Gly715Ter	p.G715*	ENST00000261769	NM_004360.3	715	Gga/Tga						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36252888	36252896	+	inframe_deletion	In_Frame_Del	DEL	AAATCTTGC	AAATCTTGC	-			P-0003236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	84	266	0	ENST00000300305.3:c.466_474del	p.Ala156_Phe158del	p.A156_F158del	ENST00000300305		156	GCAAGATTT/-						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	144	201	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc						NEWRECORD																																																																									
FOXP1	27086	MSKCC	GRCh37	3	71026102	71026127	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCGTTGCGTCGGAAGTAAGCAAA	GCCGCGTTGCGTCGGAAGTAAGCAAA	-			P-0003634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	165	247	0	ENST00000318789.4:c.1495_1520del	p.Phe499HisfsTer9	p.F499Hfs*9	ENST00000318789	NM_032682.5	499	TTTGCTTACTTCCGACGCAACGCGGCc/c						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0003110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	288	245	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0003110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	207	224	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt						NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48033738	48033738	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	47	222	0	ENST00000234420.5:c.3949C>A	p.His1317Asn	p.H1317N	ENST00000234420	NM_000179.2	1317	Cat/Aat						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189586388	189586388	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	219	115	0	ENST00000264731.3:c.1012C>A	p.Arg338Ser	p.R338S	ENST00000264731	NM_003722.4	338	Cgc/Agc						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55564527	55564527	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	91	244	0	ENST00000288135.5:c.415A>G	p.Thr139Ala	p.T139A	ENST00000288135	NM_000222.2	139	Aca/Gca						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180050970	180050970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	112	295	0	ENST00000261937.6:c.1513G>A	p.Asp505Asn	p.D505N	ENST00000261937	NM_182925.4	505	Gac/Aac						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139418336	139418336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	117	230	0	ENST00000277541.6:c.236G>A	p.Arg79His	p.R79H	ENST00000277541	NM_017617.3	79	cGc/cAc						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2130244	2130244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	308	282	0	ENST00000219476.3:c.3476G>A	p.Arg1159Gln	p.R1159Q	ENST00000219476	NM_000548.3	1159	cGg/cAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112154935	112154935	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	300	221	0	ENST00000257430.4:c.1206delT	p.Glu403LysfsTer51	p.E403Kfs*51	ENST00000257430	NM_000038.5	402	cgT/cg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	205	378	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49027248	49027248	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0000888-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			35	350	263	0	ENST00000267163.4:c.1814+1G>T		p.X605_splice	ENST00000267163	NM_000321.2	605							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0001335-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			225	301	335	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215632305	215632305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001335-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	77	544	0	ENST00000260947.4:c.1469C>T	p.Thr490Ile	p.T490I	ENST00000260947	NM_000465.2	490	aCc/aTc						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115720	8115720	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001335-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			927	106	511	0	ENST00000346208.3:c.1066A>G	p.Met356Val	p.M356V	ENST00000346208		356	Atg/Gtg						NEWRECORD																																																																									
RPS6KA4	8986	MSKCC	GRCh37	11	64127763	64127763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001335-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			755	69	330	0	ENST00000334205.4:c.256C>T	p.Arg86Cys	p.R86C	ENST00000334205	NM_003942.2	86	Cgc/Tgc						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56487301	56487301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001335-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			648	59	309	0	ENST00000267101.3:c.1447G>A	p.Asp483Asn	p.D483N	ENST00000267101	NM_001982.3	483	Gac/Aac						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115109667	115109691	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGTCCGGCTTGGCTTCCAAGCCG	CCTGTCCGGCTTGGCTTCCAAGCCG	-			P-0001335-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			843	157	586	0	ENST00000257566.3:c.2187_2211del	p.Gly730ProfsTer151	p.G730Pfs*151	ENST00000257566	NM_016569.3	729	agCGGCTTGGAAGCCAAGCCGGACAGG/ag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001335-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	436	358	0	ENST00000269305.4:c.314del	p.Gly105AlafsTer18	p.G105Afs*18	ENST00000269305	NM_001126112.2	105	gGc/gc						NEWRECORD																																																																									
RARA	5914	MSKCC	GRCh37	17	38511513	38511518	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGACCG	AGACCG	-			P-0001335-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			669	93	277	0	ENST00000254066.5:c.1013-2_1016del		p.X338_splice	ENST00000254066	NM_000964.3	338							NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2956958	2956958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			482	47	329	0	ENST00000396946.4:c.2669C>T	p.Ser890Leu	p.S890L	ENST00000396946	NM_032415.4	890	tCg/tTg						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151949089	151949089	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			611	149	458	0	ENST00000262189.6:c.1556A>G	p.His519Arg	p.H519R	ENST00000262189	NM_170606.2	519	cAc/cGc						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15288427	15288427	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			145	36	153	0	ENST00000263388.2:c.4312A>C	p.Asn1438His	p.N1438H	ENST00000263388	NM_000435.2	1438	Aac/Cac						NEWRECORD																																																																									
DAXX	1616	MSKCC	GRCh37	6	33288357	33288357	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			127	283	399	0	ENST00000374542.5:c.1051G>C	p.Ala351Pro	p.A351P	ENST00000374542	NM_001141970.1	351	Gca/Cca						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64577445	64577445	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			94	274	561	0	ENST00000337652.1:c.137A>C	p.His46Pro	p.H46P	ENST00000337652	NM_130803.2	46	cAt/cCt						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89690819	89690820	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0001886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			168	132	305	0	ENST00000371953.3:c.227_228del	p.Tyr76Ter	p.Y76*	ENST00000371953	NM_000314.4	76	TAt/t						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0002336-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			183	582	347	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002336-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			47	248	332	2	ENST00000269305.4:c.764T>A	p.Ile255Asn	p.I255N	ENST00000269305	NM_001126112.2	255	aTc/aAc						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131911617	131911617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002336-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			539	179	347	0	ENST00000265335.6:c.362C>T	p.Thr121Ile	p.T121I	ENST00000265335		121	aCa/aTa						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55371927	55371927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002336-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			88	33	53	0	ENST00000297316.4:c.617G>T	p.Cys206Phe	p.C206F	ENST00000297316	NM_022454.3	206	tGc/tTc						NEWRECORD																																																																									
SMARCB1	6598	MSKCC	GRCh37	22	24135805	24135805	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002336-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			612	155	446	0	ENST00000263121.7:c.292G>C	p.Glu98Gln	p.E98Q	ENST00000263121	NM_003073.3	98	Gag/Cag						NEWRECORD																																																																									
CBFB	865	MSKCC	GRCh37	16	67100657	67100657	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002336-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			79	185	459	0	ENST00000412916.2:c.355del	p.Leu119TrpfsTer20	p.L119Wfs*20	ENST00000412916		119	Ctg/tg						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16052797	16052801	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAT	AAAAT	-			P-0002336-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			91	342	417	0	ENST00000268712.3:c.873_877del	p.Leu291PhefsTer2	p.L291Ffs*2	ENST00000268712	NM_006311.3	291	ttATTTTtt/tttt						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59821883	59821884	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0002336-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			542	213	574	0	ENST00000259008.2:c.2166_2167del	p.Val723HisfsTer13	p.V723Hfs*13	ENST00000259008	NM_032043.2	722	acAGtc/actc						NEWRECORD																																																																									
PAX5	5079	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs926053251		P-0001382-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			563	72	706	0	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27100860	27100860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001382-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			563	59	519	0	ENST00000324856.7:c.4142C>A	p.Ala1381Asp	p.A1381D	ENST00000324856	NM_006015.4	1381	gCc/gAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577560	7577560	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057520002		P-0001382-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	39	337	0	ENST00000269305.4:c.721T>C	p.Ser241Pro	p.S241P	ENST00000269305	NM_001126112.2	241	Tcc/Ccc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0003890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	415	344	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0003890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	160	339	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175561	112175561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	268	356	0	ENST00000257430.4:c.4271del	p.Pro1424GlnfsTer49	p.P1424Qfs*49	ENST00000257430	NM_000038.5	1424	Cca/ca						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81969932	81969932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	497	543	0	ENST00000359376.3:c.3001C>T	p.Arg1001Cys	p.R1001C	ENST00000359376	NM_002661.3	1001	Cgc/Tgc						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17953858	17953869	+	inframe_deletion	In_Frame_Del	DEL	CCGGCCGCTGGG	CCGGCCGCTGGG	-			P-0003890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	311	269	0	ENST00000458235.1:c.533_544del	p.Ala178_Pro181del	p.A178_P181del	ENST00000458235	NM_000215.3	178	gCCCAGCGGCCGGga/gga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	124	450	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0003510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	54	482	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	78	326	0	ENST00000269305.4:c.434T>G	p.Leu145Arg	p.L145R	ENST00000269305	NM_001126112.2	145	cTg/cGg						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151874812	151874812	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	83	322	0	ENST00000262189.6:c.7726del	p.Ala2576LeufsTer7	p.A2576Lfs*7	ENST00000262189	NM_170606.2	2576	Gct/ct						NEWRECORD																																																																									
CDKN1B	1027	MSKCC	GRCh37	12	12870952	12870952	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002652-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			377	181	336	0	ENST00000228872.4:c.179G>A	p.Trp60Ter	p.W60*	ENST00000228872	NM_004064.3	60	tGg/tAg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916934	178916936	+	inframe_deletion	In_Frame_Del	DEL	CCG	CCG	-			P-0002652-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	227	275	0	ENST00000263967.3:c.321_323del	p.Arg108del	p.R108del	ENST00000263967	NM_006218.2	107	aaCCGt/aat						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36164595	36164597	+	inframe_deletion	In_Frame_Del	DEL	CGC	CGC	-			P-0002652-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			117	324	211	0	ENST00000300305.3:c.1278_1280del	p.Arg427del	p.R427del	ENST00000300305		426	ccGCGc/ccc						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36164607	36164613	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTCGC	CGCTCGC	-			P-0002652-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			119	336	220	0	ENST00000300305.3:c.1262_1268del	p.Gly421AlafsTer171	p.G421Afs*171	ENST00000300305		421	gGCGAGCGc/gc						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0001128-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	33	333	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0001128-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	9	328	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55146520	55146520	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001128-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	27	388	0	ENST00000257290.5:c.2194A>G	p.Met732Val	p.M732V	ENST00000257290	NM_006206.4	732	Atg/Gtg						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32911100	32911100	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001128-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	23	251	0	ENST00000380152.3:c.2608A>T	p.Ile870Phe	p.I870F	ENST00000380152		870	Att/Ttt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001128-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	11	625	0	ENST00000269305.4:c.643A>T	p.Ser215Cys	p.S215C	ENST00000269305	NM_001126112.2	215	Agt/Tgt						NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52714574	52714574	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001128-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	21	578	0	ENST00000322088.6:c.332C>A	p.Ser111Tyr	p.S111Y	ENST00000322088	NM_014225.5	111	tCc/tAc						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226576458	226576475	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TGAAGGAGACACAGGATA	TGAAGGAGACACAGGATA	-			P-0001128-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	36	566	0	ENST00000366794.5:c.618-19_618-2del		p.X206_splice	ENST00000366794	NM_001618.3	206							NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52663002	52663002	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000275-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			564	141	576	0	ENST00000394830.3:c.1351G>C	p.Asp451His	p.D451H	ENST00000394830	NM_018313.4	451	Gat/Cat						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118368760	118368760	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000275-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	138	358	0	ENST00000534358.1:c.5774A>G	p.His1925Arg	p.H1925R	ENST00000534358	NM_005933.3	1925	cAt/cGt						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32971123	32971123	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000275-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			715	274	591	0	ENST00000380152.3:c.9590A>G	p.Asp3197Gly	p.D3197G	ENST00000380152		3197	gAc/gGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000275-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			204	284	474	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108127020	108127040	+	inframe_deletion	In_Frame_Del	DEL	ATAGCTGAAGAGGAAGCATAT	ATAGCTGAAGAGGAAGCATAT	-			P-0000275-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			654	58	601	0	ENST00000278616.4:c.2204_2224delTAGCTGAAGAGGAAGCATATA	p.Ile735_Tyr741del	p.I735_Y741del	ENST00000278616	NM_000051.3	735	ATAGCTGAAGAGGAAGCATAT/-						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0003479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	324	440	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
XPO1	7514	MSKCC	GRCh37	2	61719175	61719175	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	52	471	0	ENST00000401558.2:c.1882C>T	p.Gln628Ter	p.Q628*	ENST00000401558	NM_003400.3	628	Caa/Taa						NEWRECORD																																																																									
SRC	6714	MSKCC	GRCh37	20	36012596	36012596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	31	258	0	ENST00000358208.4:c.40C>T	p.Arg14Trp	p.R14W	ENST00000358208		14	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577572	7577572	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	114	381	0	ENST00000269305.4:c.709delA	p.Met237CysfsTer10	p.M237Cfs*10	ENST00000269305	NM_001126112.2	237	Atg/tg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577081	7577084	+	frameshift_variant	Frame_Shift_Del	DEL	TCCT	TCCT	CC			P-0004354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			21	448	467	1	ENST00000269305.4:c.854_857delinsGG	p.Glu285GlyfsTer20	p.E285Gfs*20	ENST00000269305	NM_001126112.2	285	gAGGAa/gGGa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0002420-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			563	15	529	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0000463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			152	481	493	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
RHOA	387	MSKCC	GRCh37	3	49397745	49397745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	491	559	0	ENST00000418115.1:c.479C>T	p.Ser160Leu	p.S160L	ENST00000418115	NM_001664.2	160	tCa/tTa						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134977919	134977919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			720	442	440	0	ENST00000398015.3:c.2912C>T	p.Ser971Phe	p.S971F	ENST00000398015	NM_004441.4	971	tCt/tTt						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55594218	55594218	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			484	224	399	0	ENST00000288135.5:c.1921C>A	p.Leu641Ile	p.L641I	ENST00000288135	NM_000222.2	641	Ctc/Atc						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32163720	32163720	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1253487294		P-0000463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			247	129	304	0	ENST00000375023.3:c.5506G>A	p.Glu1836Lys	p.E1836K	ENST00000375023	NM_004557.3	1836	Gag/Aag						NEWRECORD																																																																									
PNRC1	10957	MSKCC	GRCh37	6	89790748	89790748	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			603	546	779	0	ENST00000336032.3:c.135C>G	p.Ile45Met	p.I45M	ENST00000336032	NM_006813.2	45	atC/atG						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5072624	5072624	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0000463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			133	306	209	0	ENST00000381652.3:c.1774G>A	p.Glu592Lys	p.E592K	ENST00000381652	NM_004972.3	592	Gag/Aag						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8106035	8106035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			203	215	261	0	ENST00000346208.3:c.855C>A	p.Asn285Lys	p.N285K	ENST00000346208		285	aaC/aaA						NEWRECORD																																																																									
MYCL1	4610	MSKCC	GRCh37	1	40367034	40367043	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCCGTGGA	GCGCCGTGGA	-			P-0000463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			490	190	655	0	ENST00000397332.2:c.154_163delTCCACGGCGC	p.Ser52ProfsTer85	p.S52Pfs*85	ENST00000397332	NM_001033082.2	52	TCCACGGCGCcc/cc						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098969	178098970	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0000463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	716	385	0	ENST00000397062.3:c.75_76delGCinsAA	p.Gln26Lys	p.Q26K	ENST00000397062	NM_006164.4	25	agGCaa/agAAaa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27057874	27057874	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003193-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	131	392	0	ENST00000324856.7:c.1582C>T	p.Gln528Ter	p.Q528*	ENST00000324856	NM_006015.4	528	Cag/Tag						NEWRECORD																																																																									
EIF1AX	1964	MSKCC	GRCh37	X	20156731	20156731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003193-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	194	338	0	ENST00000379607.5:c.26G>A	p.Gly9Asp	p.G9D	ENST00000379607	NM_001412.3	9	gGt/gAt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27089664	27089665	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0003193-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	128	323	0	ENST00000324856.7:c.2620_2621del	p.Asn874TyrfsTer61	p.N874Yfs*61	ENST00000324856	NM_006015.4	874	AAt/t						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	157	193	0	ENST00000269305.4:c.487T>A	p.Tyr163Asn	p.Y163N	ENST00000269305	NM_001126112.2	163	Tac/Aac						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242470	55242470	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	122	270	0	ENST00000275493.2:c.2240T>C	p.Leu747Ser	p.L747S	ENST00000275493	NM_005228.3	747	tTa/tCa						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720661	89720661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	45	78	0	ENST00000371953.3:c.812T>C	p.Phe271Ser	p.F271S	ENST00000371953	NM_000314.4	271	tTt/tCt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242476	55242490	+	inframe_deletion	In_Frame_Del	DEL	AAGCAACATCTCCGA	AAGCAACATCTCCGA	-			P-0004117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	110	265	0	ENST00000275493.2:c.2250_2264del	p.Thr751_Ala755del	p.T751_A755del	ENST00000275493	NM_005228.3	749	gAAGCAACATCTCCGAaa/gaa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0001131-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			758	815	279	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0001131-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			777	137	485	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332							NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65306996	65306996	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001131-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			914	69	448	2	ENST00000342505.4:c.2581C>A	p.Pro861Thr	p.P861T	ENST00000342505	NM_002227.2	861	Cca/Aca						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38950211	38950211	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001131-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1002	86	283	0	ENST00000357387.3:c.3739A>C	p.Thr1247Pro	p.T1247P	ENST00000357387	NM_152756.3	1247	Act/Cct						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5065038	5065038	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0001131-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			803	334	430	0	ENST00000381652.3:c.1212T>G	p.Ile404Met	p.I404M	ENST00000381652	NM_004972.3	404	atT/atG						NEWRECORD																																																																									
CHEK1	1111	MSKCC	GRCh37	11	125497635	125497635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001131-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1020	122	310	0	ENST00000428830.2:c.199G>A	p.Val67Ile	p.V67I	ENST00000428830	NM_001114121.2	67	Gta/Ata						NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52724250	52724250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001131-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			724	82	388	0	ENST00000322088.6:c.1382C>T	p.Ala461Val	p.A461V	ENST00000322088	NM_014225.5	461	gCa/gTa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579556	7579560	+	frameshift_variant	Frame_Shift_Del	DEL	ATCAA	ATCAA	-			P-0001131-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			552	37	296	0	ENST00000269305.4:c.127_131del	p.Leu43AlafsTer7	p.L43Afs*7	ENST00000269305	NM_001126112.2	43	TTGATg/g						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	253	289	0	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602341	10602341	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	240	282	0	ENST00000171111.5:c.1237del	p.Arg413ValfsTer45	p.R413Vfs*45	ENST00000171111	NM_203500.1	413	Cgt/gt						NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	161969951	161969951	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	241	253	0	ENST00000366898.1:c.1018G>T	p.Gly340Trp	p.G340W	ENST00000366898	NM_004562.2	340	Ggg/Tgg						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931588		P-0002635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	189	318	0	ENST00000349496.5:c.94G>A	p.Asp32Asn	p.D32N	ENST00000349496	NM_001904.3	32	Gac/Aac						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8341727	8341727	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	226	399	0	ENST00000356435.5:c.4913G>T	p.Gly1638Val	p.G1638V	ENST00000356435		1638	gGa/gTa						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70333771	70333771	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			594	253	310	0	ENST00000373644.4:c.1676C>A	p.Thr559Asn	p.T559N	ENST00000373644	NM_030625.2	559	aCc/aAc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1222006	1222006	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0002635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	203	205	1	ENST00000326873.7:c.920+1G>T		p.X307_splice	ENST00000326873	NM_000455.4	307							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	167	369	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139391978	139391978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	188	419	1	ENST00000277541.6:c.6213G>T	p.Glu2071Asp	p.E2071D	ENST00000277541	NM_017617.3	2071	gaG/gaT						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212568828	212568828	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	56	416	0	ENST00000342788.4:c.1289+1G>T		p.X430_splice	ENST00000342788	NM_005235.2	430							NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47162987	47162987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	186	449	0	ENST00000409792.3:c.3139G>A	p.Asp1047Asn	p.D1047N	ENST00000409792	NM_014159.6	1047	Gat/Aat						NEWRECORD																																																																									
FOXP1	27086	MSKCC	GRCh37	3	71247432	71247432	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	158	389	0	ENST00000318789.4:c.101A>T	p.Glu34Val	p.E34V	ENST00000318789	NM_032682.5	34	gAg/gTg						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	93956604	93956604	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	92	783	1	ENST00000369303.4:c.2632G>T	p.Ala878Ser	p.A878S	ENST00000369303	NM_004440.3	878	Gct/Tct						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	94120438	94120438	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	227	796	0	ENST00000369303.4:c.613T>A	p.Cys205Ser	p.C205S	ENST00000369303	NM_004440.3	205	Tgc/Agc						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50459521	50459521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	124	355	0	ENST00000331340.3:c.810C>A	p.Asn270Lys	p.N270K	ENST00000331340	NM_006060.4	270	aaC/aaA						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453149	140453149	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	74	405	0	ENST00000288602.6:c.1786G>T	p.Gly596Cys	p.G596C	ENST00000288602	NM_004333.4	596	Ggt/Tgt						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95598873	95598873	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	134	449	0	ENST00000343455.3:c.286A>C	p.Thr96Pro	p.T96P	ENST00000343455	NM_177438.2	96	Acg/Ccg						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88476326	88476326	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	58	412	0	ENST00000360948.2:c.1806G>T	p.Lys602Asn	p.K602N	ENST00000360948	NM_001012338.2	602	aaG/aaT						NEWRECORD																																																																									
TRAF7	84231	MSKCC	GRCh37	16	2223317	2223317	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	164	358	1	ENST00000326181.6:c.929A>T	p.Gln310Leu	p.Q310L	ENST00000326181	NM_032271.2	310	cAg/cTg						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9624852	9624852	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	84	491	0	ENST00000353224.5:c.125T>A	p.Leu42Gln	p.L42Q	ENST00000353224	NM_177990.2	42	cTg/cAg						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66942828	66942828	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	155	505	0	ENST00000374690.3:c.2607+2T>C		p.X869_splice	ENST00000374690	NM_000044.3	869							NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610255	10610256	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	185	542	0	ENST00000171111.5:c.454_455del	p.Val152ProfsTer21	p.V152Pfs*21	ENST00000171111	NM_203500.1	152	GTc/c						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139399273	139399273	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000620-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	27	346	0	ENST00000277541.6:c.4870G>C	p.Glu1624Gln	p.E1624Q	ENST00000277541	NM_017617.3	1624	Gag/Cag						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91292988	91292988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000620-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	38	455	0	ENST00000355112.3:c.490G>A	p.Glu164Lys	p.E164K	ENST00000355112	NM_000057.2	164	Gag/Aag						NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000620-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	8	573	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0001472-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	162	238	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga						NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35876181	35876181	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001472-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	22	268	0	ENST00000303115.3:c.973C>T	p.Gln325Ter	p.Q325*	ENST00000303115	NM_002185.3	325	Caa/Taa						NEWRECORD																																																																									
FGF3	2248	MSKCC	GRCh37	11	69625435	69625435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001472-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			389	155	292	0	ENST00000334134.2:c.358C>T	p.Arg120Trp	p.R120W	ENST00000334134	NM_005247.2	120	Cgg/Tgg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108124561	108124563	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0001472-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	90	240	0	ENST00000278616.4:c.1924_1926del	p.Glu642del	p.E642del	ENST00000278616	NM_000051.3	640	aAAGaa/aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576904	7576904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001472-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			176	370	255	0	ENST00000269305.4:c.942del	p.Ser315LeufsTer30	p.S315Lfs*30	ENST00000269305	NM_001126112.2	314	tcC/tc						NEWRECORD																																																																									
DAXX	1616	MSKCC	GRCh37	6	33286558	33286558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	38	224	0	ENST00000374542.5:c.2185G>A	p.Asp729Asn	p.D729N	ENST00000374542	NM_001141970.1	729	Gat/Aat						NEWRECORD																																																																									
RHEB	6009	MSKCC	GRCh37	7	151216551	151216551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	32	228	0	ENST00000262187.5:c.47C>T	p.Ser16Phe	p.S16F	ENST00000262187	NM_005614.3	16	tCt/tTt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0000900-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	4979	227	6	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30648456	30648456	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000900-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	194	328	0	ENST00000359013.4:c.81C>G	p.His27Gln	p.H27Q	ENST00000359013	NM_001024847.2	27	caC/caG						NEWRECORD																																																																									
NF2	4771	MSKCC	GRCh37	22	30069315	30069315	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	191	315	0	ENST00000338641.4:c.1180G>T	p.Glu394Ter	p.E394*	ENST00000338641	NM_000268.3	394	Gag/Tag						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49444926	49444926	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	46	83	0	ENST00000301067.7:c.2540A>C	p.Glu847Ala	p.E847A	ENST00000301067	NM_003482.3	847	gAg/gCg						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42003213	42003213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1209	317	628	0	ENST00000219905.7:c.2750C>T	p.Ser917Phe	p.S917F	ENST00000219905	NM_001164273.1	917	tCc/tTc						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49439722	49439722	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	193	401	0	ENST00000301067.7:c.4722del	p.Met1575Ter	p.M1575*	ENST00000301067	NM_003482.3	1574	ccC/cc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577506	7577507	+	missense_variant	Missense_Mutation	DNP	CT	CT	GA			P-0003487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	149	221	0	ENST00000269305.4:c.774_775delinsTC	p.Glu258_Asp259delinsAspHis	p.E258_D259delinsDH	ENST00000269305	NM_001126112.2	258	gaAGac/gaTCac						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0002425-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			707	136	359	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55948129	55948129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002425-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			921	230	362	0	ENST00000263923.4:c.3842C>T	p.Ser1281Phe	p.S1281F	ENST00000263923	NM_002253.2	1281	tCt/tTt						NEWRECORD																																																																									
HIST1H3B	8358	MSKCC	GRCh37	6	26031919	26031919	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002425-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			600	145	204	0	ENST00000244661.2:c.370G>C	p.Asp124His	p.D124H	ENST00000244661	NM_003537.3	124	Gac/Cac						NEWRECORD																																																																									
PIM1	5292	MSKCC	GRCh37	6	37141754	37141754	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002425-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			859	218	358	0	ENST00000373509.5:c.829G>C	p.Asp277His	p.D277H	ENST00000373509	NM_002648.3	277	Gat/Cat						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55370798	55370798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002425-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	119	201	0	ENST00000297316.4:c.100G>A	p.Glu34Lys	p.E34K	ENST00000297316	NM_022454.3	34	Gag/Aag						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48937009	48937009	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002425-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			741	269	377	0	ENST00000267163.4:c.777G>T	p.Arg259Ser	p.R259S	ENST00000267163	NM_000321.2	259	agG/agT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002425-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			654	211	391	0	ENST00000269305.4:c.842A>T	p.Asp281Val	p.D281V	ENST00000269305	NM_001126112.2	281	gAc/gTc						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70119789	70119789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002425-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			653	202	335	0	ENST00000245479.2:c.791G>C	p.Arg264Thr	p.R264T	ENST00000245479	NM_000346.3	264	aGa/aCa						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36206827	36206827	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002425-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			473	105	230	0	ENST00000300305.3:c.685G>C	p.Glu229Gln	p.E229Q	ENST00000300305		229	Gag/Cag						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36206873	36206873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002425-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			491	118	216	0	ENST00000300305.3:c.639G>T	p.Gln213His	p.Q213H	ENST00000300305		213	caG/caT						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0003116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	193	243	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912660		P-0003116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	207	327	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5123048	5123048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	190	354	0	ENST00000381652.3:c.3104C>T	p.Ser1035Leu	p.S1035L	ENST00000381652	NM_004972.3	1035	tCa/tTa						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66213918	66213918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	125	304	0	ENST00000273854.3:c.2512G>A	p.Gly838Arg	p.G838R	ENST00000273854	NM_004439.5	838	Gga/Aga						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55268975	55268975	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	150	296	0	ENST00000275493.2:c.3041A>T	p.Asp1014Val	p.D1014V	ENST00000275493	NM_005228.3	1014	gAc/gTc						NEWRECORD																																																																									
RAD21	5885	MSKCC	GRCh37	8	117878947	117878947	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1147	183	457	0	ENST00000297338.2:c.22C>G	p.Leu8Val	p.L8V	ENST00000297338	NM_006265.2	8	Ctc/Gtc						NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45003746	45003746	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0003116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	94	253	0	ENST00000558401.1:c.2T>C	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	aTg/aCg						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2129662	2129662	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	67	236	0	ENST00000219476.3:c.3389C>G	p.Ser1130Cys	p.S1130C	ENST00000219476	NM_000548.3	1130	tCc/tGc						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23646794	23646794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	163	370	0	ENST00000261584.4:c.1073C>T	p.Pro358Leu	p.P358L	ENST00000261584	NM_024675.3	358	cCc/cTc						NEWRECORD																																																																									
CRLF2	64109	MSKCC	GRCh37	X	1325416	1325416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	84	298	0	ENST00000381566.1:c.259G>A	p.Asp87Asn	p.D87N	ENST00000381566		87	Gac/Aac						NEWRECORD																																																																									
ARAF	369	MSKCC	GRCh37	X	47424260	47424260	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	35	353	1	ENST00000377045.4:c.265G>T	p.Glu89Ter	p.E89*	ENST00000377045	NM_001654.4	89	Gag/Tag						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76920216	76920216	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1085	138	513	0	ENST00000373344.5:c.3861T>A	p.Asp1287Glu	p.D1287E	ENST00000373344	NM_000489.3	1287	gaT/gaA						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000527-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			898	288	519	0	ENST00000397062.3:c.101G>T	p.Arg34Leu	p.R34L	ENST00000397062	NM_006164.4	34	cGa/cTa						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153245523	153245523	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000527-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			476	125	322	0	ENST00000281708.4:c.1668T>G	p.Ser556Arg	p.S556R	ENST00000281708	NM_033632.3	556	agT/agG						NEWRECORD																																																																									
PLK2	10769	MSKCC	GRCh37	5	57754849	57754849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000527-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			853	96	507	0	ENST00000274289.3:c.341C>T	p.Pro114Leu	p.P114L	ENST00000274289	NM_006622.3	114	cCt/cTt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108115639	108115639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000527-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			751	207	435	0	ENST00000278616.4:c.787C>T	p.Leu263Phe	p.L263F	ENST00000278616	NM_000051.3	263	Ctt/Ttt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49442898	49442898	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000527-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	54	320	0	ENST00000301067.7:c.4010A>G	p.Glu1337Gly	p.E1337G	ENST00000301067	NM_003482.3	1337	gAg/gGg						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3832709	3832709	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000527-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			677	55	349	0	ENST00000262367.5:c.1549C>T	p.Gln517Ter	p.Q517*	ENST00000262367	NM_004380.2	517	Cag/Tag						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68835612	68835612	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000527-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			745	116	519	0	ENST00000261769.5:c.203A>G	p.Tyr68Cys	p.Y68C	ENST00000261769	NM_004360.3	68	tAt/tGt						NEWRECORD																																																																									
ICOSLG	23308	MSKCC	GRCh37	21	45657056	45657056	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000527-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			412	90	365	0	ENST00000407780.3:c.100G>T	p.Glu34Ter	p.E34*	ENST00000407780	NM_001283052.1	34	Gag/Tag						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48951087	48951088	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0000527-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			413	105	241	0	ENST00000267163.4:c.1251_1252delAA	p.Arg418SerfsTer9	p.R418Sfs*9	ENST00000267163	NM_000321.2	417	AAa/a						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579330	7579330	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000527-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	63	300	0	ENST00000269305.4:c.357del	p.Lys120SerfsTer3	p.K120Sfs*3	ENST00000269305	NM_001126112.2	119	gcC/gc						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			667	101	467	0	ENST00000397062.3:c.101G>A	p.Arg34Gln	p.R34Q	ENST00000397062	NM_006164.4	34	cGa/cAa						NEWRECORD																																																																									
MAP2K1	5604	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	146	411	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			208	106	344	0	ENST00000269305.4:c.711G>C	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atC						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16202920	16202920	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	64	409	0	ENST00000375759.3:c.628A>T	p.Thr210Ser	p.T210S	ENST00000375759	NM_015001.2	210	Aca/Tca						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134911519	134911519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	64	384	0	ENST00000398015.3:c.1984C>T	p.Arg662Cys	p.R662C	ENST00000398015	NM_004441.4	662	Cgt/Tgt						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189456447	189456447	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	78	465	0	ENST00000264731.3:c.208C>T	p.Gln70Ter	p.Q70*	ENST00000264731	NM_003722.4	70	Cag/Tag						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66361157	66361157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			585	74	458	0	ENST00000273854.3:c.1015G>A	p.Glu339Lys	p.E339K	ENST00000273854	NM_004439.5	339	Gaa/Aaa						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106162495	106162495	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	116	336	0	ENST00000380013.4:c.3410-1G>C		p.X1137_splice	ENST00000380013	NM_001127208.2	1137							NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143067089	143067089	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			549	168	594	0	ENST00000262992.4:c.1624C>A	p.Leu542Met	p.L542M	ENST00000262992	NM_001101669.1	542	Ctg/Atg						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143235912	143235912	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	53	342	0	ENST00000262992.4:c.376C>T	p.Arg126Ter	p.R126*	ENST00000262992	NM_001101669.1	126	Cga/Tga						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38942426	38942426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			797	90	414	0	ENST00000357387.3:c.5107G>A	p.Asp1703Asn	p.D1703N	ENST00000357387	NM_152756.3	1703	Gat/Aat						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56174918	56174918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	67	324	0	ENST00000399503.3:c.2077G>C	p.Asp693His	p.D693H	ENST00000399503	NM_005921.1	693	Gat/Cat						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67589219	67589219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	86	478	0	ENST00000274335.5:c.1207G>A	p.Glu403Lys	p.E403K	ENST00000274335		403	Gaa/Aaa						NEWRECORD																																																																									
HIST1H3B	8358	MSKCC	GRCh37	6	26031891	26031891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	59	187	0	ENST00000244661.2:c.398G>A	p.Gly133Glu	p.G133E	ENST00000244661	NM_003537.3	133	gGa/gAa						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2983881	2983881	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	117	500	0	ENST00000396946.4:c.649A>T	p.Met217Leu	p.M217L	ENST00000396946	NM_032415.4	217	Atg/Ttg						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81334708	81334708	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			708	79	553	0	ENST00000222390.5:c.2008G>A	p.Glu670Lys	p.E670K	ENST00000222390	NM_000601.4	670	Gag/Aag						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145737311	145737311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			669	81	418	0	ENST00000428558.2:c.3376G>A	p.Glu1126Lys	p.E1126K	ENST00000428558	NM_004260.3	1126	Gag/Aag						NEWRECORD																																																																									
MYOD1	4654	MSKCC	GRCh37	11	17741427	17741427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	55	390	0	ENST00000250003.3:c.98C>T	p.Pro33Leu	p.P33L	ENST00000250003	NM_002478.4	33	cCg/cTg						NEWRECORD																																																																									
CDK4	1019	MSKCC	GRCh37	12	58145430	58145430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			431	74	378	0	ENST00000257904.6:c.71G>T	p.Arg24Leu	p.R24L	ENST00000257904	NM_000075.3	24	cGt/cTt						NEWRECORD																																																																									
SUZ12	23512	MSKCC	GRCh37	17	30264509	30264509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			193	26	146	0	ENST00000322652.5:c.244G>A	p.Asp82Asn	p.D82N	ENST00000322652	NM_015355.2	82	Gac/Aac						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7119503	7119503	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	77	566	0	ENST00000302850.5:c.3751G>C	p.Asp1251His	p.D1251H	ENST00000302850	NM_000208.2	1251	Gat/Cat						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17951100	17951100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			389	70	369	0	ENST00000458235.1:c.1193C>G	p.Ser398Cys	p.S398C	ENST00000458235	NM_000215.3	398	tCc/tGc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40713427	40713427	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752787425		P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			291	63	352	0	ENST00000373198.4:c.4088G>A	p.Arg1363Gln	p.R1363Q	ENST00000373198	NM_133170.3	1363	cGg/cAg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40735506	40735506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			379	51	412	0	ENST00000373198.4:c.3367G>A	p.Ala1123Thr	p.A1123T	ENST00000373198	NM_133170.3	1123	Gcc/Acc						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602581	10602581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000807-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	26	325	0	ENST00000171111.5:c.997G>T	p.Gly333Cys	p.G333C	ENST00000171111	NM_203500.1	333	Ggc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0000807-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			502	52	437	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0000807-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			223	16	172	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189582180	189582180	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000807-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			330	23	245	0	ENST00000264731.3:c.739C>A	p.His247Asn	p.H247N	ENST00000264731	NM_003722.4	247	Cat/Aat						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88472559	88472559	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000807-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	26	396	0	ENST00000360948.2:c.1996G>T	p.Gly666Cys	p.G666C	ENST00000360948	NM_001012338.2	666	Ggt/Tgt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0000807-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			385	135	397	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0002759-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	136	545	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331							NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145741751	145741751	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002759-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			428	58	511	0	ENST00000428558.2:c.752G>T	p.Ser251Ile	p.S251I	ENST00000428558	NM_004260.3	251	aGc/aTc						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70426955	70426955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002759-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	44	471	0	ENST00000373644.4:c.4615G>A	p.Glu1539Lys	p.E1539K	ENST00000373644	NM_030625.2	1539	Gag/Aag						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11141526	11141526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002759-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			324	89	559	0	ENST00000344626.4:c.3503C>T	p.Ala1168Val	p.A1168V	ENST00000344626	NM_003072.3	1168	gCa/gTa						NEWRECORD																																																																									
ERCC2	2068	MSKCC	GRCh37	19	45871948	45871948	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002759-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	92	586	0	ENST00000391945.4:c.300G>C	p.Glu100Asp	p.E100D	ENST00000391945	NM_000400.3	100	gaG/gaC						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	99	193	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0004172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	144	96	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0004172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	97	185	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70120495	70120505	+	frameshift_variant	Frame_Shift_Del	DEL	ACAACCCGTCT	ACAACCCGTCT	-			P-0004172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	255	215	0	ENST00000245479.2:c.1500_1510del	p.Gln500HisfsTer74	p.Q500Hfs*74	ENST00000245479	NM_000346.3	499	gaACAACCCGTCTac/gaac						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061414	38061414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	153	146	0	ENST00000250448.2:c.575C>T	p.Thr192Met	p.T192M	ENST00000250448	NM_004496.3	192	aCg/aTg						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63412941	63412941	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	337	289	0	ENST00000330258.3:c.226G>T	p.Gly76Ter	p.G76*	ENST00000330258	NM_152424.3	76	Gga/Tga						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70352972	70352972	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0004172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	122	233	1	ENST00000374080.3:c.4528-1G>C		p.X1510_splice	ENST00000374080		1510							NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175786	112175786	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	60	123	0	ENST00000257430.4:c.4496del	p.Gly1499AspfsTer8	p.G1499Dfs*8	ENST00000257430	NM_000038.5	1499	Gga/ga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			42	200	253	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT						NEWRECORD																																																																									
RHOA	387	MSKCC	GRCh37	3	49412905	49412905	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519951		P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			58	166	426	0	ENST00000418115.1:c.118G>C	p.Glu40Gln	p.E40Q	ENST00000418115	NM_001664.2	40	Gag/Cag						NEWRECORD																																																																									
PDCD1	5133	MSKCC	GRCh37	2	242793365	242793365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	261	261	0	ENST00000334409.5:c.712C>A	p.Pro238Thr	p.P238T	ENST00000334409	NM_005018.2	238	Ccc/Acc						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56111663	56111663	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			39	143	153	0	ENST00000399503.3:c.263C>G	p.Ser88Trp	p.S88W	ENST00000399503	NM_005921.1	88	tCg/tGg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112111363	112111363	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			31	103	308	0	ENST00000257430.4:c.460G>C	p.Glu154Gln	p.E154Q	ENST00000257430	NM_000038.5	154	Gaa/Caa						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	401928	401928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	124	383	0	ENST00000399788.2:c.4863C>A	p.Asp1621Glu	p.D1621E	ENST00000399788	NM_001042603.1	1621	gaC/gaA						NEWRECORD																																																																									
RPTOR	57521	MSKCC	GRCh37	17	78727843	78727843	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			60	245	355	0	ENST00000306801.3:c.688C>G	p.Gln230Glu	p.Q230E	ENST00000306801	NM_020761.2	230	Cag/Gag						NEWRECORD																																																																									
PIK3R2	5296	MSKCC	GRCh37	19	18266723	18266723	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	184	173	0	ENST00000222254.8:c.34C>G	p.Leu12Val	p.L12V	ENST00000222254	NM_005027.3	12	Ctg/Gtg						NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50912463	50912463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	252	390	0	ENST00000440232.2:c.1977C>G	p.Ile659Met	p.I659M	ENST00000440232	NM_002691.3	659	atC/atG						NEWRECORD																																																																									
NF2	4771	MSKCC	GRCh37	22	30057303	30057303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	99	257	0	ENST00000338641.4:c.785G>A	p.Arg262Gln	p.R262Q	ENST00000338641	NM_000268.3	262	cGa/cAa						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41565509	41565509	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	103	326	0	ENST00000263253.7:c.4175G>A	p.Arg1392Lys	p.R1392K	ENST00000263253	NM_001429.3	1392	aGa/aAa						NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45007805	45007810	+	inframe_deletion	In_Frame_Del	DEL	CTTGTA	CTTGTA	-			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			39	92	235	0	ENST00000558401.1:c.254_259del	p.Leu85_Tyr86del	p.L85_Y86del	ENST00000558401	NM_004048.2	84	ctCTTGTAc/ctc						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66280012	66280012	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	119	299	0	ENST00000273854.3:c.1677del	p.Thr560ProfsTer15	p.T560Pfs*15	ENST00000273854	NM_004439.5	559	acC/ac						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123197751	123197759	+	inframe_deletion	In_Frame_Del	DEL	TACAGATGT	TACAGATGT	-			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			25	166	249	0	ENST00000218089.9:c.1876_1884del	p.Thr626_Val628del	p.T626_V628del	ENST00000218089	NM_001042749.1	625	gaTACAGATGTt/gat						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153268223	153268224	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	AC	AC	CA			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			31	108	144	0	ENST00000281708.4:c.585-1_585delinsTG		p.X195_splice	ENST00000281708	NM_033632.3	195							NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16199350	16199350	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001833-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			872	53	605	1	ENST00000375759.3:c.123G>T	p.Arg41Ser	p.R41S	ENST00000375759	NM_015001.2	41	agG/agT						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25965734	25965734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001833-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			781	56	644	0	ENST00000435504.4:c.3472G>A	p.Ala1158Thr	p.A1158T	ENST00000435504		1158	Gcc/Acc						NEWRECORD																																																																									
PDCD1	5133	MSKCC	GRCh37	2	242793392	242793392	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001833-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	37	516	0	ENST00000334409.5:c.685C>T	p.Gln229Ter	p.Q229*	ENST00000334409	NM_005018.2	229	Cag/Tag						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1294373	1294373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001833-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	25	309	0	ENST00000310581.5:c.628G>A	p.Ala210Thr	p.A210T	ENST00000310581	NM_198253.2	210	Gcc/Acc						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149513316	149513316	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001833-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	26	405	0	ENST00000261799.4:c.767G>T	p.Arg256Leu	p.R256L	ENST00000261799	NM_002609.3	256	cGg/cTg						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81386589	81386589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001833-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			782	50	503	0	ENST00000222390.5:c.398G>A	p.Gly133Glu	p.G133E	ENST00000222390	NM_000601.4	133	gGa/gAa						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135771774	135771774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001833-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			855	46	720	0	ENST00000298552.3:c.3343G>A	p.Glu1115Lys	p.E1115K	ENST00000298552	NM_001162426.1	1115	Gag/Aag						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43620417	43620417	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001833-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			495	33	343	0	ENST00000355710.3:c.3026T>A	p.Met1009Lys	p.M1009K	ENST00000355710	NM_020975.4	1009	aTg/aAg						NEWRECORD																																																																									
RPTOR	57521	MSKCC	GRCh37	17	78765301	78765301	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001833-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			755	58	509	0	ENST00000306801.3:c.882G>C	p.Leu294Phe	p.L294F	ENST00000306801	NM_020761.2	294	ttG/ttC						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11138459	11138459	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0001833-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			490	33	390	0	ENST00000344626.4:c.3216-1G>T		p.X1072_splice	ENST00000344626	NM_003072.3	1072							NEWRECORD																																																																									
FGFR4	2264	MSKCC	GRCh37	5	176523697	176523697	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001833-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			523	34	626	0	ENST00000292408.4:c.2110del	p.Glu704ArgfsTer18	p.E704Rfs*18	ENST00000292408	NM_213647.1	703	cGg/cg						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139393428	139393429	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0001833-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			479	76	470	0	ENST00000277541.6:c.6102_6103delinsTT	p.Trp2034_Ala2035delinsCysSer	p.W2034_A2035delinsCS	ENST00000277541	NM_017617.3	2034	tgGGcc/tgTTcc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001489-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			62	91	367	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5231357	5231357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001489-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			354	93	657	0	ENST00000357368.4:c.2119G>A	p.Glu707Lys	p.E707K	ENST00000357368	NM_002850.3	707	Gag/Aag						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115875	8115879	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCT	GCCCT	-			P-0001489-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	96	676	0	ENST00000346208.3:c.1221_1225delGCCCT	p.Pro408GlnfsTer97	p.P408Qfs*97	ENST00000346208		407	tcGCCCTtc/tctc						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70119776	70119776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001203-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			36	95	768	2	ENST00000245479.2:c.778C>T	p.Pro260Ser	p.P260S	ENST00000245479	NM_000346.3	260	Cca/Tca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579317	7579324	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTCACA	AAGTCACA	-			P-0001203-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			31	23	279	0	ENST00000269305.4:c.363_370del	p.Val122HisfsTer24	p.V122Hfs*24	ENST00000269305	NM_001126112.2	121	tcTGTGACTTgc/tcgc						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30680854	30680854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003852-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	237	490	0	ENST00000376406.3:c.865C>G	p.Leu289Val	p.L289V	ENST00000376406	NM_014641.2	289	Ctg/Gtg						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118360844	118360844	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0003852-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	34	161	0	ENST00000534358.1:c.4576A>T	p.Ile1526Phe	p.I1526F	ENST00000534358	NM_005933.3	1526	Atc/Ttc						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0003852-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	173	334	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118344320	118344320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			286	52	612	0	ENST00000534358.1:c.2446C>T	p.Pro816Ser	p.P816S	ENST00000534358	NM_005933.3	816	Cca/Tca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			135	133	879	0	ENST00000269305.4:c.581T>C	p.Leu194Pro	p.L194P	ENST00000269305	NM_001126112.2	194	cTt/cCt						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29676263	29676263	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	179	624	0	ENST00000358273.4:c.7316del	p.Leu2439Ter	p.L2439*	ENST00000358273	NM_001042492.2	2439	Tta/ta						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579310	7579310	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0000335-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	36	316	0	ENST00000269305.4:c.375+2T>G		p.X125_splice	ENST00000269305	NM_001126112.2	125							NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50444452	50444452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000335-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	80	168	0	ENST00000331340.3:c.382G>A	p.Gly128Arg	p.G128R	ENST00000331340	NM_006060.4	128	Ggg/Agg						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142232374	142232374	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002188-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			885	216	359	0	ENST00000350721.4:c.4610T>A	p.Leu1537Ter	p.L1537*	ENST00000350721	NM_001184.3	1537	tTa/tAa						NEWRECORD																																																																									
FGF3	2248	MSKCC	GRCh37	11	69625080	69625080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002188-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			683	51	196	0	ENST00000334134.2:c.713C>T	p.Ala238Val	p.A238V	ENST00000334134	NM_005247.2	238	gCg/gTg						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31374366	31374366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002188-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			509	163	388	0	ENST00000328111.2:c.365G>A	p.Arg122His	p.R122H	ENST00000328111	NM_006892.3	122	cGt/cAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579345	7579364	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGAAGCCCAGACGGAAAC	CAAGAAGCCCAGACGGAAAC	-			P-0002188-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			124	344	318	0	ENST00000269305.4:c.323_342del	p.Gly108AlafsTer34	p.G108Afs*34	ENST00000269305	NM_001126112.2	108	gGTTTCCGTCTGGGCTTCTTG/g						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000241-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			645	253	382	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112178879	112178879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000241-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			634	79	319	0	ENST00000257430.4:c.7588C>T	p.Arg2530Trp	p.R2530W	ENST00000257430	NM_000038.5	2530	Cgg/Tgg						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98209286	98209286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000241-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1378	187	662	0	ENST00000331920.6:c.4252G>A	p.Val1418Ile	p.V1418I	ENST00000331920	NM_000264.3	1418	Gtc/Atc						NEWRECORD																																																																									
PAK1	5058	MSKCC	GRCh37	11	77047135	77047135	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000241-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			923	133	436	0	ENST00000356341.3:c.1409T>A	p.Leu470Gln	p.L470Q	ENST00000356341	NM_002576.4	470	cTg/cAg						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000241-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			510	260	402	1	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0000241-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			382	195	278	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174693	112174697	+	frameshift_variant	Frame_Shift_Del	DEL	CTATG	CTATG	-			P-0000241-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			606	189	274	0	ENST00000257430.4:c.3402_3406delCTATG	p.Asp1134GlufsTer3	p.D1134Efs*3	ENST00000257430	NM_000038.5	1134	gaCTATGaa/gaaa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0000241-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			762	101	419	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a						NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0003652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	43	646	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa						NEWRECORD																																																																									
MAPK3	5595	MSKCC	GRCh37	16	30134441	30134441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	17	477	0	ENST00000263025.4:c.90G>A	p.Met30Ile	p.M30I	ENST00000263025	NM_002746.2	30	atG/atA						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72831467	72831467	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	32	610	0	ENST00000268489.5:c.5114C>G	p.Ser1705Ter	p.S1705*	ENST00000268489	NM_006885.3	1705	tCa/tGa						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	41	359	0	ENST00000347630.2:c.392G>C	p.Trp131Ser	p.W131S	ENST00000347630	NM_001007230.1	131	tGg/tCg						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44918713	44918713	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0003695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	24	160	0	ENST00000377967.4:c.1194+2T>C		p.X398_splice	ENST00000377967	NM_021140.2	398							NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002306-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			643	60	521	0	ENST00000347630.2:c.398T>C	p.Phe133Ser	p.F133S	ENST00000347630	NM_001007230.1	133	tTc/tCc						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108159726	108159726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002306-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			715	46	573	0	ENST00000278616.4:c.4132C>T	p.Pro1378Ser	p.P1378S	ENST00000278616	NM_000051.3	1378	Cca/Tca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577525	7577527	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0002306-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			806	45	368	0	ENST00000269305.4:c.754_756del	p.Leu252del	p.L252del	ENST00000269305	NM_001126112.2	252	CTC/-						NEWRECORD																																																																									
IRS1	3667	MSKCC	GRCh37	2	227660371	227660371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	40	126	0	ENST00000305123.5:c.3084G>T	p.Arg1028Ser	p.R1028S	ENST00000305123	NM_005544.2	1028	agG/agT						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89462338	89462338	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	75	298	0	ENST00000336596.2:c.1810N>T	p.Asp604Tyr	p.D604Y	ENST00000336596	NM_005233.5	604	Gac/Tac						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134670265	134670265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	141	260	0	ENST00000398015.3:c.176A>T	p.Gln59Leu	p.Q59L	ENST00000398015	NM_004441.4	59	cAg/cTg						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66467970	66467970	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	74	317	0	ENST00000273854.3:c.299A>T	p.Gln100Leu	p.Q100L	ENST00000273854	NM_004439.5	100	cAa/cTa						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176636850	176636850	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	111	291	0	ENST00000439151.2:c.1450G>T	p.Glu484Ter	p.E484*	ENST00000439151	NM_022455.4	484	Gaa/Taa						NEWRECORD																																																																									
HIST1H3H	8357	MSKCC	GRCh37	6	27778080	27778080	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1512	199	664	0	ENST00000369163.2:c.229C>A	p.Gln77Lys	p.Q77K	ENST00000369163	NM_003536.2	77	Cag/Aag						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2972169	2972169	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	38	210	0	ENST00000396946.4:c.1570G>T	p.Ala524Ser	p.A524S	ENST00000396946	NM_032415.4	524	Gcc/Tcc						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106509630	106509630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	139	323	0	ENST00000359195.3:c.1624C>T	p.Arg542Trp	p.R542W	ENST00000359195	NM_002649.2	542	Cgg/Tgg						NEWRECORD																																																																									
RHEB	6009	MSKCC	GRCh37	7	151181876	151181876	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1571	155	452	1	ENST00000262187.5:c.139A>G	p.Ile47Val	p.I47V	ENST00000262187	NM_005614.3	47	Atc/Gtc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151878887	151878887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	56	234	0	ENST00000262189.6:c.6058C>A	p.Gln2020Lys	p.Q2020K	ENST00000262189	NM_170606.2	2020	Caa/Aaa						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5044413	5044413	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	104	382	0	ENST00000381652.3:c.361C>G	p.Pro121Ala	p.P121A	ENST00000381652	NM_004972.3	121	Cct/Gct						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8484335	8484335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	80	301	0	ENST00000356435.5:c.3197G>T	p.Arg1066Leu	p.R1066L	ENST00000356435		1066	cGa/cTa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8485807	8485807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	71	263	0	ENST00000356435.5:c.3010C>A	p.Pro1004Thr	p.P1004T	ENST00000356435		1004	Cca/Aca						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8486143	8486143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	81	348	0	ENST00000356435.5:c.2674G>A	p.Val892Ile	p.V892I	ENST00000356435		892	Gtc/Atc						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133760961	133760961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	101	400	1	ENST00000318560.5:c.3284G>A	p.Arg1095Gln	p.R1095Q	ENST00000318560	NM_005157.4	1095	cGg/cAg						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115937	8115937	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	145	186	0	ENST00000346208.3:c.1283T>A	p.Leu428Gln	p.L428Q	ENST00000346208		428	cTg/cAg						NEWRECORD																																																																									
CCND1	595	MSKCC	GRCh37	11	69458635	69458635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	84	274	0	ENST00000227507.2:c.450G>T	p.Trp150Cys	p.W150C	ENST00000227507	NM_053056.2	150	tgG/tgT						NEWRECORD																																																																									
CCND1	595	MSKCC	GRCh37	11	69458654	69458654	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	98	305	0	ENST00000227507.2:c.469C>T	p.Pro157Ser	p.P157S	ENST00000227507	NM_053056.2	157	Ccg/Tcg						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18644460	18644460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	91	330	0	ENST00000266497.5:c.2638C>A	p.Pro880Thr	p.P880T	ENST00000266497		880	Cct/Act						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21549216	21549216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	133	497	0	ENST00000382592.4:c.3060G>T	p.Lys1020Asn	p.K1020N	ENST00000382592	NM_014572.2	1020	aaG/aaT						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28886210	28886210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	70	291	0	ENST00000282397.4:c.3412C>A	p.His1138Asn	p.H1138N	ENST00000282397	NM_002019.4	1138	Cac/Aac						NEWRECORD																																																																									
TSHR	7253	MSKCC	GRCh37	14	81610593	81610593	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	94	347	0	ENST00000298171.2:c.2191G>T	p.Gly731Cys	p.G731C	ENST00000298171	NM_000369.2	731	Ggt/Tgt						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95579541	95579541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	56	170	0	ENST00000343455.3:c.1928G>T	p.Ser643Ile	p.S643I	ENST00000343455	NM_177438.2	643	aGt/aTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	98	232	1	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc						NEWRECORD																																																																									
MALT1	10892	MSKCC	GRCh37	18	56400681	56400681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	146	541	0	ENST00000348428.3:c.1275G>T	p.Met425Ile	p.M425I	ENST00000348428	NM_006785.3	425	atG/atT						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9543632	9543632	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	70	351	0	ENST00000353224.5:c.1522G>T	p.Asp508Tyr	p.D508Y	ENST00000353224	NM_177990.2	508	Gac/Tac						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9546958	9546958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	31	123	0	ENST00000353224.5:c.1064C>T	p.Ala355Val	p.A355V	ENST00000353224	NM_177990.2	355	gCc/gTc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40730802	40730802	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	49	224	0	ENST00000373198.4:c.3733G>T	p.Gly1245Ter	p.G1245*	ENST00000373198	NM_133170.3	1245	Gga/Tga						NEWRECORD																																																																									
GATA1	2623	MSKCC	GRCh37	X	48652279	48652279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	135	497	0	ENST00000376670.3:c.950G>T	p.Arg317Leu	p.R317L	ENST00000376670	NM_002049.3	317	cGg/cTg						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63412682	63412682	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	87	316	0	ENST00000330258.3:c.485T>A	p.Met162Lys	p.M162K	ENST00000330258	NM_152424.3	162	aTg/aAg						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66765470	66765470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	74	330	0	ENST00000374690.3:c.482C>A	p.Pro161Gln	p.P161Q	ENST00000374690	NM_000044.3	161	cCa/cAa						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66765898	66765898	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	64	372	0	ENST00000374690.3:c.910G>T	p.Glu304Ter	p.E304*	ENST00000374690	NM_000044.3	304	Gaa/Taa						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66766187	66766187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	56	141	0	ENST00000374690.3:c.1199C>T	p.Ala400Val	p.A400V	ENST00000374690	NM_000044.3	400	gCg/gTg						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70345955	70345955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	95	468	0	ENST00000374080.3:c.2492C>T	p.Ala831Val	p.A831V	ENST00000374080		831	gCt/gTt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	220	295	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	312	245	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa						NEWRECORD																																																																									
SYK	6850	MSKCC	GRCh37	9	93641212	93641212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	337	246	0	ENST00000375746.1:c.1558C>T	p.Arg520Cys	p.R520C	ENST00000375746	NM_001174167.1	520	Cgt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0000868-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	284	189	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212288967	212288967	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000868-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	52	197	0	ENST00000342788.4:c.2779C>T	p.Arg927Ter	p.R927*	ENST00000342788	NM_005235.2	927	Cga/Tga						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55569944	55569944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000868-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			160	69	124	0	ENST00000288135.5:c.811C>T	p.Arg271Cys	p.R271C	ENST00000288135	NM_000222.2	271	Cgt/Tgt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0000868-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	145	155	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40748580	40748580	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000868-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			845	84	96	0	ENST00000373198.4:c.2936C>G	p.Thr979Ser	p.T979S	ENST00000373198	NM_133170.3	979	aCt/aGt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0002890-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1052	139	282	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0002890-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			534	507	296	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149502650	149502650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002890-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			538	47	188	0	ENST00000261799.4:c.2138C>T	p.Ala713Val	p.A713V	ENST00000261799	NM_002609.3	713	gCg/gTg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575671	48575671	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002890-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			613	116	275	0	ENST00000342988.3:c.431C>A	p.Ser144Ter	p.S144*	ENST00000342988	NM_005359.5	144	tCa/tAa						NEWRECORD																																																																									
PIK3R2	5296	MSKCC	GRCh37	19	18279325	18279325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002890-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			507	135	198	0	ENST00000222254.8:c.1777G>A	p.Glu593Lys	p.E593K	ENST00000222254	NM_005027.3	593	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577089	7577090	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0002890-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			464	143	366	1	ENST00000269305.4:c.848_849delGC	p.Arg283HisfsTer22	p.R283Hfs*22	ENST00000269305	NM_001126112.2	283	cGC/c						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0001391-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			654	20	645	2	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0001391-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			729	22	472	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001165-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	543	397	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0001165-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			116	297	279	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76845384	76845384	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001165-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			687	628	630	0	ENST00000373344.5:c.6137C>A	p.Ser2046Tyr	p.S2046Y	ENST00000373344	NM_000489.3	2046	tCt/tAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0002724-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			231	323	342	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0002724-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			663	210	561	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5212464	5212464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002724-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			780	284	484	0	ENST00000357368.4:c.4653G>T	p.Gln1551His	p.Q1551H	ENST00000357368	NM_002850.3	1551	caG/caT						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175561	112175561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002724-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			499	378	473	0	ENST00000257430.4:c.4271del	p.Pro1424GlnfsTer49	p.P1424Qfs*49	ENST00000257430	NM_000038.5	1424	Cca/ca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	394	422	0	ENST00000269305.4:c.400T>G	p.Phe134Val	p.F134V	ENST00000269305	NM_001126112.2	134	Ttt/Gtt						NEWRECORD																																																																									
SOX2	6657	MSKCC	GRCh37	3	181430522	181430522	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1344	147	388	0	ENST00000325404.1:c.374A>G	p.Tyr125Cys	p.Y125C	ENST00000325404	NM_003106.3	125	tAc/tGc						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117681045	117681045	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1218	247	580	0	ENST00000368508.3:c.3575A>G	p.Asp1192Gly	p.D1192G	ENST00000368508	NM_002944.2	1192	gAt/gGt						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150005276	150005276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			853	486	558	0	ENST00000253339.5:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000253339		317	Cag/Tag						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2129360	2129360	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1277	171	524	1	ENST00000219476.3:c.3215G>T	p.Ser1072Ile	p.S1072I	ENST00000219476	NM_000548.3	1072	aGc/aTc						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120468079	120468079	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	26	240	0	ENST00000256646.2:c.4360G>T	p.Asp1454Tyr	p.D1454Y	ENST00000256646	NM_024408.3	1454	Gac/Tac						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47165204	47165204	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0001093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			622	36	295	0	ENST00000409792.3:c.922A>T	p.Lys308Ter	p.K308*	ENST00000409792	NM_014159.6	308	Aag/Tag						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52441252	52441252	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	64	267	0	ENST00000460680.1:c.518A>G	p.Tyr173Cys	p.Y173C	ENST00000460680	NM_004656.3	173	tAt/tGt						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66201843	66201843	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0001093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			460	33	210	0	ENST00000273854.3:c.2659G>T	p.Val887Leu	p.V887L	ENST00000273854	NM_004439.5	887	Gtg/Ttg						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176618953	176618953	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			573	42	352	0	ENST00000439151.2:c.996G>T	p.Lys332Asn	p.K332N	ENST00000439151	NM_022455.4	332	aaG/aaT						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151859522	151859522	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			606	86	314	0	ENST00000262189.6:c.11140A>G	p.Lys3714Glu	p.K3714E	ENST00000262189	NM_170606.2	3714	Aaa/Gaa						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145741707	145741707	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs543009701		P-0001093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	36	255	0	ENST00000428558.2:c.796G>A	p.Glu266Lys	p.E266K	ENST00000428558	NM_004260.3	266	Gag/Aag						NEWRECORD																																																																									
PAK1	5058	MSKCC	GRCh37	11	77051801	77051801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			551	52	292	0	ENST00000356341.3:c.1006G>A	p.Val336Met	p.V336M	ENST00000356341	NM_002576.4	336	Gtg/Atg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0001093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	19	170	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31019426	31019426	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			585	51	328	0	ENST00000375687.4:c.923T>C	p.Leu308Pro	p.L308P	ENST00000375687	NM_015338.5	308	cTa/cCa						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157405828	157405828	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	26	211	0	ENST00000346085.5:c.2072del	p.Gly691GlufsTer6	p.G691Efs*6	ENST00000346085	NM_020732.3	690	acG/ac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0003819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	304	161	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-						NEWRECORD																																																																									
DAXX	1616	MSKCC	GRCh37	6	33289234	33289234	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	80	210	0	ENST00000374542.5:c.318C>A	p.Cys106Ter	p.C106*	ENST00000374542	NM_001141970.1	106	tgC/tgA						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87549075	87549075	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0003819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	71	244	0	ENST00000277120.3:c.1634-2A>T		p.X545_splice	ENST00000277120		545							NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32972848	32972848	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	41	255	0	ENST00000380152.3:c.10198A>T	p.Ser3400Cys	p.S3400C	ENST00000380152		3400	Agt/Tgt						NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0002959-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			229	33	622	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061249	38061249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002959-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			208	37	698	0	ENST00000250448.2:c.740A>G	p.His247Arg	p.H247R	ENST00000250448	NM_004496.3	247	cAc/cGc						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10265680	10265680	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002959-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			254	17	768	0	ENST00000340748.4:c.1497del	p.Phe499LeufsTer3	p.F499Lfs*3	ENST00000340748		499	ttT/tt						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134968197	134968197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	30	603	0	ENST00000398015.3:c.2710G>A	p.Asp904Asn	p.D904N	ENST00000398015	NM_004441.4	904	Gac/Aac						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	33	569	0	ENST00000349310.3:c.155T>A	p.Leu52His	p.L52H	ENST00000349310	NM_001014432.1	52	cTc/cAc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27100196	27100196	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	62	343	0	ENST00000324856.7:c.3992del	p.Gln1331ArgfsTer150	p.Q1331Rfs*150	ENST00000324856	NM_006015.4	1331	cAg/cg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	56	283	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	78	258	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31387092	31387092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			697	253	364	2	ENST00000328111.2:c.1717C>T	p.Arg573Trp	p.R573W	ENST00000328111	NM_006892.3	573	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0002878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			555	130	257	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247312	153247312	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	80	312	0	ENST00000281708.4:c.1490T>C	p.Leu497Ser	p.L497S	ENST00000281708	NM_033632.3	497	tTg/tCg						NEWRECORD																																																																									
ETV1	2115	MSKCC	GRCh37	7	13971195	13971195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			544	126	278	0	ENST00000405192.2:c.734C>T	p.Ala245Val	p.A245V	ENST00000405192	NM_001163147.1	245	gCg/gTg						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151873347	151873347	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			565	59	332	0	ENST00000262189.6:c.9191A>G	p.Gln3064Arg	p.Q3064R	ENST00000262189	NM_170606.2	3064	cAa/cGa						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11141493	11141493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			695	60	355	0	ENST00000344626.4:c.3470G>A	p.Arg1157Gln	p.R1157Q	ENST00000344626	NM_003072.3	1157	cGg/cAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174458	112174458	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	19	284	0	ENST00000257430.4:c.3167del	p.Ile1056LysfsTer5	p.I1056Kfs*5	ENST00000257430	NM_000038.5	1056	aTa/aa						NEWRECORD																																																																									
AXL	558	MSKCC	GRCh37	19	41726624	41726624	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002800-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			516	86	228	0	ENST00000301178.4:c.169C>T	p.Gln57Ter	p.Q57*	ENST00000301178	NM_021913.4	57	Cag/Tag						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120458146	120458146	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002800-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			497	84	215	0	ENST00000256646.2:c.7199del	p.Arg2400GlnfsTer16	p.R2400Qfs*16	ENST00000256646	NM_024408.3	2400	cGa/ca						NEWRECORD																																																																									
RAD52	5893	MSKCC	GRCh37	12	1023653	1023676	+	inframe_deletion	In_Frame_Del	DEL	ACAGTTACAGGAGTGCTGTGCGTC	ACAGTTACAGGAGTGCTGTGCGTC	-			P-0002800-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			556	115	225	0	ENST00000358495.3:c.888_911del	p.Thr297_Val304del	p.T297_V304del	ENST00000358495	NM_134424.2	296	gtGACGCACAGCACTCCTGTAACTGTc/gtc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002800-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	76	161	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123210246	123210261	+	protein_altering_variant	In_Frame_Del	DEL	AGCATTTTGTAAGCTA	AGCATTTTGTAAGCTA	C			P-0002800-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			667	113	267	0	ENST00000218089.9:c.2598_2613delinsC	p.Ala867_Leu871del	p.A867_L871del	ENST00000218089	NM_001042749.1	866	gcAGCATTTTGTAAGCTA/gcC						NEWRECORD																																																																									
E2F3	1871	MSKCC	GRCh37	6	20490660	20490660	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0002800-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			413	63	152	0	ENST00000346618.3:c.1397G>C	p.Ter466SerextTer5	p.*466Sext*5	ENST00000346618	NM_001949.4	466	tGa/tCa						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81335035	81335035	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002962-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			721	148	349	0	ENST00000222390.5:c.1792G>C	p.Asp598His	p.D598H	ENST00000222390	NM_000601.4	598	Gat/Cat						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28601230	28601230	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002962-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			760	144	393	0	ENST00000241453.7:c.2202T>A	p.Asn734Lys	p.N734K	ENST00000241453	NM_004119.2	734	aaT/aaA						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002962-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			788	208	459	1	ENST00000347630.2:c.397T>A	p.Phe133Ile	p.F133I	ENST00000347630	NM_001007230.1	133	Ttc/Atc						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002962-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	262	288	0	ENST00000374080.3:c.3670C>G	p.Leu1224Val	p.L1224V	ENST00000374080		1224	Ctc/Gtc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0000987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			575	2276	341	1	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
MCL1	4170	MSKCC	GRCh37	1	150552000	150552000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			757	152	586	0	ENST00000369026.2:c.7G>A	p.Gly3Ser	p.G3S	ENST00000369026	NM_021960.4	3	Ggc/Agc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8504377	8504377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	40	322	0	ENST00000356435.5:c.1706C>T	p.Ser569Leu	p.S569L	ENST00000356435		569	tCa/tTa						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28886185	28886185	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			497	39	539	0	ENST00000282397.4:c.3437G>C	p.Arg1146Thr	p.R1146T	ENST00000282397	NM_002019.4	1146	aGa/aCa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	118	305	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578466	7578466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002767-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	316	345	0	ENST00000269305.4:c.464C>A	p.Thr155Asn	p.T155N	ENST00000269305	NM_001126112.2	155	aCc/aAc						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0004108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	55	378	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106655	27106655	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			374	73	360	0	ENST00000324856.7:c.6266T>C	p.Leu2089Pro	p.L2089P	ENST00000324856	NM_006015.4	2089	cTa/cCa						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156849143	156849143	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			261	71	356	0	ENST00000524377.1:c.2035G>T	p.Asp679Tyr	p.D679Y	ENST00000524377	NM_002529.3	679	Gac/Tac						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41278077	41278077	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0002558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	50	454	0	ENST00000349496.5:c.1955-2A>G		p.X652_splice	ENST00000349496	NM_001904.3	652							NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187531004	187531004	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			590	70	378	0	ENST00000441802.2:c.10019A>G	p.Tyr3340Cys	p.Y3340C	ENST00000441802	NM_005245.3	3340	tAc/tGc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207061	1207067	+	frameshift_variant	Frame_Shift_Del	DEL	TGATGGG	TGATGGG	-			P-0002558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			262	65	317	0	ENST00000326873.7:c.149_155del	p.Leu50ArgfsTer12	p.L50Rfs*12	ENST00000326873	NM_000455.4	50	cTGATGGGg/cg						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0003273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	523	363	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49421897	49421897	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001493-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			746	166	493	0	ENST00000301067.7:c.14410G>C	p.Ala4804Pro	p.A4804P	ENST00000301067	NM_003482.3	4804	Gcg/Ccg						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32911181	32911181	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001493-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			421	89	488	0	ENST00000380152.3:c.2689G>T	p.Glu897Ter	p.E897*	ENST00000380152		897	Gaa/Taa						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061215	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCAGCCGTTCTCGAACATGTT	GCAGCCGTTCTCGAACATGTT	-			P-0001493-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			704	127	481	0	ENST00000250448.2:c.754_774delAACATGTTCGAGAACGGCTGC	p.Asn252_Cys258del	p.N252_C258del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTGC/-						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149511596	149511596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001089-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			608	39	367	0	ENST00000261799.4:c.1189C>T	p.Arg397Trp	p.R397W	ENST00000261799	NM_002609.3	397	Cgg/Tgg						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176707647	176707647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001089-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			544	56	298	0	ENST00000439151.2:c.5704G>A	p.Glu1902Lys	p.E1902K	ENST00000439151	NM_022455.4	1902	Gag/Aag						NEWRECORD																																																																									
MYC	4609	MSKCC	GRCh37	8	128750874	128750874	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001089-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			648	1696	571	0	ENST00000377970.2:c.411G>T	p.Glu137Asp	p.E137D	ENST00000377970	NM_002467.4	137	gaG/gaT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540652		P-0001089-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	123	257	0	ENST00000269305.4:c.743G>C	p.Arg248Pro	p.R248P	ENST00000269305	NM_001126112.2	248	cGg/cCg						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29685986	29685986	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0001089-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			589	277	475	0	ENST00000358273.4:c.8114-1G>T		p.X2705_splice	ENST00000358273	NM_001042492.2	2705							NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41245606	41245606	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001089-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			683	80	451	0	ENST00000357654.3:c.1942G>C	p.Glu648Gln	p.E648Q	ENST00000357654	NM_007294.3	648	Gaa/Caa						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412015	116412035	+	inframe_deletion	In_Frame_Del	DEL	TGTAGACTACCGAGCTACTTT	TGTAGACTACCGAGCTACTTT	-			P-0001089-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			839	652	260	0	ENST00000397752.3:c.3001_3021del	p.Val1001_Phe1007del	p.V1001_F1007del	ENST00000397752	NM_000245.2	1000	tcTGTAGACTACCGAGCTACTTTt/tct						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187628788	187628788	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000102-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			696	61	402	0	ENST00000441802.2:c.2194G>C	p.Val732Leu	p.V732L	ENST00000441802	NM_005245.3	732	Gtg/Ctg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0000102-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			358	124	278	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac						NEWRECORD																																																																									
MAPK1	5594	MSKCC	GRCh37	22	22162045	22162060	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCAGGGTTCTCTGG	CCTCAGGGTTCTCTGG	-			P-0000102-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			649	35	388	0	ENST00000215832.6:c.195_210delCCAGAGAACCCTGAGG	p.Cys65TrpfsTer3	p.C65Wfs*3	ENST00000215832	NM_002745.4	65	tgCCAGAGAACCCTGAGG/tg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000102-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			648	37	327	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag						NEWRECORD																																																																									
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0003733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	11	162	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	18	215	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42058420	42058421	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0003733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	71	493	1	ENST00000219905.7:c.8140_8141delinsTT	p.Gly2714Phe	p.G2714F	ENST00000219905	NM_001164273.1	2714	GGt/TTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0001785-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			274	407	622	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31022517	31022517	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001785-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			356	227	360	0	ENST00000375687.4:c.2002G>T	p.Gly668Cys	p.G668C	ENST00000375687	NM_015338.5	668	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0001698-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			81	359	470	1	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16256462	16256462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001698-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			274	204	473	0	ENST00000375759.3:c.3727C>T	p.Arg1243Trp	p.R1243W	ENST00000375759	NM_015001.2	1243	Cgg/Tgg						NEWRECORD																																																																									
XPO1	7514	MSKCC	GRCh37	2	61706070	61706070	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001698-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			820	44	629	0	ENST00000401558.2:c.3101T>G	p.Phe1034Cys	p.F1034C	ENST00000401558	NM_003400.3	1034	tTt/tGt						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28622575	28622575	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001698-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			202	134	347	0	ENST00000241453.7:c.1042G>T	p.Gly348Ter	p.G348*	ENST00000241453	NM_004119.2	348	Gga/Tga						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	360063	360063	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001698-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			436	172	583	0	ENST00000262320.3:c.1026del	p.Ile343SerfsTer71	p.I343Sfs*71	ENST00000262320	NM_003502.3	342	ggG/gg						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226573297	226573297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	119	278	0	ENST00000366794.5:c.919G>A	p.Asp307Asn	p.D307N	ENST00000366794	NM_001618.3	307	Gat/Aat						NEWRECORD																																																																									
SDHB	6390	MSKCC	GRCh37	1	17350571	17350571	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			164	117	171	0	ENST00000375499.3:c.541-2A>G		p.X181_splice	ENST00000375499	NM_003000.2	181							NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27057727	27057727	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	165	343	0	ENST00000324856.7:c.1435C>T	p.Gln479Ter	p.Q479*	ENST00000324856	NM_006015.4	479	Cag/Tag						NEWRECORD																																																																									
CDC73	79577	MSKCC	GRCh37	1	193117024	193117024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			308	124	367	0	ENST00000367435.3:c.757C>A	p.Leu253Ile	p.L253I	ENST00000367435	NM_024529.4	253	Ctt/Att						NEWRECORD																																																																									
MSH2	4436	MSKCC	GRCh37	2	47635624	47635624	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			324	102	300	0	ENST00000233146.2:c.296G>T	p.Arg99Ile	p.R99I	ENST00000233146	NM_000251.2	99	aGa/aTa						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47058737	47058737	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			105	141	219	0	ENST00000409792.3:c.7541A>T	p.His2514Leu	p.H2514L	ENST00000409792	NM_014159.6	2514	cAc/cTc						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32169201	32169201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			92	110	200	0	ENST00000375023.3:c.3832G>A	p.Gly1278Ser	p.G1278S	ENST00000375023	NM_004557.3	1278	Ggc/Agc						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140501301	140501301	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	98	233	0	ENST00000288602.6:c.771G>T	p.Gln257His	p.Q257H	ENST00000288602	NM_004333.4	257	caG/caT						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18552600	18552600	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			121	135	335	0	ENST00000266497.5:c.2011G>T	p.Glu671Ter	p.E671*	ENST00000266497		671	Gaa/Taa						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49431843	49431843	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	107	176	0	ENST00000301067.7:c.9296G>T	p.Arg3099Leu	p.R3099L	ENST00000301067	NM_003482.3	3099	cGc/cTc						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21563018	21563018	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	38	296	0	ENST00000382592.4:c.901G>T	p.Gly301Cys	p.G301C	ENST00000382592	NM_014572.2	301	Ggc/Tgc						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28610141	28610141	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			264	79	317	2	ENST00000241453.7:c.1349C>A	p.Ala450Glu	p.A450E	ENST00000241453	NM_004119.2	450	gCg/gAg						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28624268	28624268	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	172	385	0	ENST00000241453.7:c.706G>T	p.Glu236Ter	p.E236*	ENST00000241453	NM_004119.2	236	Gaa/Taa						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49027174	49027174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			134	271	361	0	ENST00000267163.4:c.1741G>T	p.Gly581Ter	p.G581*	ENST00000267163	NM_000321.2	581	Gga/Tga						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88799136	88799136	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			28	64	212	0	ENST00000360948.2:c.248+1G>A		p.X83_splice	ENST00000360948	NM_001012338.2	83							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577102	7577103	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TA			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			106	205	298	0	ENST00000269305.4:c.835_836delinsTA	p.Gly279Ter	p.G279*	ENST00000269305	NM_001126112.2	279	GGg/TAg						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15964832	15964832	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			152	181	361	0	ENST00000268712.3:c.5764A>G	p.Arg1922Gly	p.R1922G	ENST00000268712	NM_006311.3	1922	Aga/Gga						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56435153	56435155	+	stop_gained	Nonsense_Mutation	ONP	CGG	CGG	AGA			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			183	46	137	0	ENST00000407977.2:c.1982_1984delinsTCT	p.Ser661_Glu662delinsPheTer	p.S661_E662delinsF*	ENST00000407977		661	tCCGag/tTCTag						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10597431	10597431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			84	256	196	1	ENST00000171111.5:c.1772G>T	p.Trp591Leu	p.W591L	ENST00000171111	NM_203500.1	591	tGg/tTg						NEWRECORD																																																																									
TMPRSS2	7113	MSKCC	GRCh37	21	42839815	42839815	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			96	83	219	0	ENST00000398585.3:c.1426-2A>T		p.X476_splice	ENST00000398585	NM_001135099.1	476							NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8484193	8484193	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	149	333	0	ENST00000356435.5:c.3339del	p.Phe1114SerfsTer10	p.F1114Sfs*10	ENST00000356435		1113	gcC/gc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	64	399	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0003324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	105	262	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508547	106508547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	42	141	0	ENST00000359195.3:c.541G>T	p.Val181Leu	p.V181L	ENST00000359195	NM_002649.2	181	Gtg/Ttg						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5064985	5064985	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	66	389	1	ENST00000381652.3:c.1159G>T	p.Val387Leu	p.V387L	ENST00000381652	NM_004972.3	387	Gta/Tta						NEWRECORD																																																																									
ARAF	369	MSKCC	GRCh37	X	47426779	47426779	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	91	298	0	ENST00000377045.4:c.1024C>A	p.Gln342Lys	p.Q342K	ENST00000377045	NM_001654.4	342	Cag/Aag						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76937179	76937179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	156	572	0	ENST00000373344.5:c.3569G>T	p.Arg1190Ile	p.R1190I	ENST00000373344	NM_000489.3	1190	aGa/aTa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0000982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			679	305	226	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0000982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	95	120	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc						NEWRECORD																																																																									
MSH2	4436	MSKCC	GRCh37	2	47637453	47637453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			313	81	112	1	ENST00000233146.2:c.587C>T	p.Pro196Leu	p.P196L	ENST00000233146	NM_000251.2	196	cCa/cTa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0000982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			162	127	81	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131940662	131940662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			353	24	148	0	ENST00000265335.6:c.2689G>A	p.Glu897Lys	p.E897K	ENST00000265335		897	Gaa/Aaa						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128848606	128848606	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			456	99	179	0	ENST00000249373.3:c.1271T>C	p.Met424Thr	p.M424T	ENST00000249373	NM_005631.4	424	aTg/aCg						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55372337	55372337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	52	120	1	ENST00000297316.4:c.1027C>T	p.Arg343Trp	p.R343W	ENST00000297316	NM_022454.3	343	Cgg/Tgg						NEWRECORD																																																																									
CDK8	1024	MSKCC	GRCh37	13	26828861	26828861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			505	377	135	0	ENST00000381527.3:c.83G>A	p.Gly28Asp	p.G28D	ENST00000381527	NM_001260.1	28	gGc/gAc						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0000982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	3946	114	3	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157099065	157099065	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0000871-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			50	37	41	0	ENST00000346085.5:c.2T>C	p.Met1?	p.M1?	ENST00000346085	NM_020732.3	1	aTg/aCg						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16257817	16257817	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000871-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	102	108	0	ENST00000375759.3:c.5083del	p.Glu1695AsnfsTer6	p.E1695Nfs*6	ENST00000375759	NM_015001.2	1694	gtG/gt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0004666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	169	288	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116601	112116601	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0004666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	237	253	0	ENST00000257430.4:c.645+1G>A		p.X215_splice	ENST00000257430	NM_000038.5	215							NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55228007	55228007	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	252	396	0	ENST00000275493.2:c.1474A>C	p.Ser492Arg	p.S492R	ENST00000275493	NM_005228.3	492	Agc/Cgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	269	300	0	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42796465	42796465	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	294	393	1	ENST00000575354.2:c.3022C>T	p.Gln1008Ter	p.Q1008*	ENST00000575354	NM_015125.3	1008	Cag/Tag						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40747137	40747137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	102	355	0	ENST00000373198.4:c.2945C>T	p.Pro982Leu	p.P982L	ENST00000373198	NM_133170.3	982	cCg/cTg						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56181792	56181792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002813-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	49	347	0	ENST00000399503.3:c.4016G>A	p.Gly1339Glu	p.G1339E	ENST00000399503	NM_005921.1	1339	gGa/gAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577077	7577077	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs748891343		P-0002813-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			247	38	422	0	ENST00000269305.4:c.861G>C	p.Glu287Asp	p.E287D	ENST00000269305	NM_001126112.2	287	gaG/gaC						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29420441	29420441	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000318-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1042	236	674	0	ENST00000389048.3:c.4040G>T	p.Arg1347Leu	p.R1347L	ENST00000389048	NM_004304.4	1347	cGg/cTg						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66231724	66231724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000318-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1209	76	668	0	ENST00000273854.3:c.1976C>T	p.Pro659Leu	p.P659L	ENST00000273854	NM_004439.5	659	cCc/cTc						NEWRECORD																																																																									
PAX5	5079	MSKCC	GRCh37	9	37015039	37015039	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs185643174		P-0000318-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			702	191	517	0	ENST00000358127.4:c.365G>A	p.Arg122Gln	p.R122Q	ENST00000358127	NM_001280556.1	122	cGg/cAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0001923-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	179	317	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
VTCN1	79679	MSKCC	GRCh37	1	117695864	117695864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001923-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			228	112	278	0	ENST00000369458.3:c.573C>A	p.Phe191Leu	p.F191L	ENST00000369458	NM_024626.3	191	ttC/ttA						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29663872	29663872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001923-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			487	116	347	0	ENST00000358273.4:c.6367C>G	p.His2123Asp	p.H2123D	ENST00000358273	NM_001042492.2	2123	Cat/Gat						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156845368	156845368	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	36	392	1	ENST00000524377.1:c.1411T>A	p.Leu471Met	p.L471M	ENST00000524377	NM_002529.3	471	Ttg/Atg						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134670844	134670844	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	25	130	0	ENST00000398015.3:c.755G>C	p.Arg252Pro	p.R252P	ENST00000398015	NM_004441.4	252	cGa/cCa						NEWRECORD																																																																									
DAXX	1616	MSKCC	GRCh37	6	33286913	33286913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	29	240	0	ENST00000374542.5:c.2024C>T	p.Ser675Phe	p.S675F	ENST00000374542	NM_001141970.1	675	tCc/tTc						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3929852	3929852	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	125	363	0	ENST00000262367.5:c.66C>G	p.Phe22Leu	p.F22L	ENST00000262367	NM_004380.2	22	ttC/ttG						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89448598	89448613	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCAAGTTTGAGTT	GCCGCAAGTTTGAGTT	-			P-0003200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	76	305	0	ENST00000336596.2:c.1562_1577del	p.Ser521MetfsTer19	p.S521Mfs*19	ENST00000336596	NM_005233.5	521	aGCCGCAAGTTTGAGTTt/at						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000530-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	39	322	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578227	7578227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	68	608	1	ENST00000269305.4:c.622G>A	p.Asp208Asn	p.D208N	ENST00000269305	NM_001126112.2	208	Gac/Aac						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178917490	178917490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	62	349	0	ENST00000263967.3:c.365G>A	p.Gly122Asp	p.G122D	ENST00000263967	NM_006218.2	122	gGc/gAc						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89877402	89877402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	94	474	1	ENST00000389301.3:c.361G>A	p.Val121Met	p.V121M	ENST00000389301	NM_000135.2	121	Gtg/Atg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	45	542	0	ENST00000269305.4:c.859G>C	p.Glu287Gln	p.E287Q	ENST00000269305	NM_001126112.2	287	Gag/Cag						NEWRECORD																																																																									
XIAP	331	MSKCC	GRCh37	X	123020146	123020146	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	133	629	0	ENST00000355640.3:c.635del	p.Pro212LeufsTer33	p.P212Lfs*33	ENST00000355640		212	Cct/ct						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52439198	52439198	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	67	388	0	ENST00000460680.1:c.1044del	p.Asn349ThrfsTer13	p.N349Tfs*13	ENST00000460680	NM_004656.3	348	ccC/cc						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72832113	72832113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004193-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	77	919	0	ENST00000268489.5:c.4468G>A	p.Glu1490Lys	p.E1490K	ENST00000268489	NM_006885.3	1490	Gag/Aag						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30673797	30673797	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004325-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	30	278	0	ENST00000376406.3:c.3163T>G	p.Ser1055Ala	p.S1055A	ENST00000376406	NM_014641.2	1055	Tct/Gct						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002206-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			571	32	221	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
XPO1	7514	MSKCC	GRCh37	2	61721176	61721176	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002206-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			973	75	401	1	ENST00000401558.2:c.1098T>A	p.Phe366Leu	p.F366L	ENST00000401558	NM_003400.3	366	ttT/ttA						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0001807-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	287	475	1	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0001807-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	101	514	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112176212	112176212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001807-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			291	116	471	0	ENST00000257430.4:c.4921G>A	p.Val1641Met	p.V1641M	ENST00000257430	NM_000038.5	1641	Gtg/Atg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0001807-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			68	199	480	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175182	112175182	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001807-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			124	140	239	0	ENST00000257430.4:c.3892del	p.Ser1298LeufsTer7	p.S1298Lfs*7	ENST00000257430	NM_000038.5	1297	gaT/ga						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001306-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	78	160	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68846093	68846093	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0001306-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			500	190	499	0	ENST00000261769.5:c.1064T>G	p.Leu355Ter	p.L355*	ENST00000261769	NM_004360.3	355	tTa/tGa						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	54	269	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat						NEWRECORD																																																																									
FH	2271	MSKCC	GRCh37	1	241661270	241661270	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0000907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			700	206	314	0	ENST00000366560.3:c.1391G>T	p.Gly464Val	p.G464V	ENST00000366560	NM_000143.3	464	gGg/gTg						NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35871286	35871286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			968	61	343	0	ENST00000303115.3:c.508C>G	p.Arg170Gly	p.R170G	ENST00000303115	NM_002185.3	170	Cgc/Ggc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8499685	8499685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			565	236	315	0	ENST00000356435.5:c.2284C>A	p.Gln762Lys	p.Q762K	ENST00000356435		762	Cag/Aag						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108123623	108123623	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1020	83	357	0	ENST00000278616.4:c.1882C>T	p.Gln628Ter	p.Q628*	ENST00000278616	NM_000051.3	628	Caa/Taa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			647	371	466	0	ENST00000269305.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000269305	NM_001126112.2	273	Cgt/Agt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			359	175	381	0	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15290037	15290037	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			411	566	423	0	ENST00000263388.2:c.3517G>T	p.Gly1173Trp	p.G1173W	ENST00000263388	NM_000435.2	1173	Ggg/Tgg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000344-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			601	161	503	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921379	178921379	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000344-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			753	40	547	0	ENST00000263967.3:c.861G>C	p.Leu287Phe	p.L287F	ENST00000263967	NM_006218.2	287	ttG/ttC						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88428948	88428948	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000344-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	84	736	0	ENST00000360948.2:c.2152A>T	p.Asn718Tyr	p.N718Y	ENST00000360948	NM_001012338.2	718	Aat/Tat						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10597402	10597402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000344-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	167	575	0	ENST00000171111.5:c.1801C>T	p.Arg601Trp	p.R601W	ENST00000171111	NM_203500.1	601	Cgg/Tgg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221312	1221312	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000344-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			340	120	527	0	ENST00000326873.7:c.836delG	p.Gly279AlafsTer8	p.G279Afs*8	ENST00000326873	NM_000455.4	279	Ggc/gc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001350-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			588	308	227	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99193459	99193459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001350-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			701	297	356	0	ENST00000074304.5:c.2654G>A	p.Arg885His	p.R885H	ENST00000074304	NM_001134224.1	885	cGc/cAc						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68846168	68846168	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0001350-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			254	261	276	0	ENST00000261769.5:c.1137+2T>G		p.X379_splice	ENST00000261769	NM_004360.3	379							NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0001300-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			592	98	289	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47045004	47045004	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001300-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			444	190	392	0	ENST00000329236.7:c.2096A>G	p.His699Arg	p.H699R	ENST00000329236	NM_001204466.1	699	cAc/cGc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164664	112164665	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0001300-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	93	160	0	ENST00000257430.4:c.1741_1742del	p.Lys581GlyfsTer20	p.K581Gfs*20	ENST00000257430	NM_000038.5	580	AAa/a						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0000674-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			677	301	255	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0000674-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			216	113	76	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000674-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	172	209	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117683892	117683892	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000674-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			732	302	339	0	ENST00000368508.3:c.3255C>G	p.Phe1085Leu	p.F1085L	ENST00000368508	NM_002944.2	1085	ttC/ttG						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000674-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			145	142	170	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15355259	15355259	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000674-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			91	13	42	0	ENST00000263377.2:c.2364G>C	p.Gln788His	p.Q788H	ENST00000263377	NM_058243.2	788	caG/caC						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9862740	9862740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001297-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	74	233	0	ENST00000330684.3:c.2563G>A	p.Asp855Asn	p.D855N	ENST00000330684	NM_001134407.1	855	Gac/Aac						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44929196	44929196	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001297-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			517	179	268	0	ENST00000377967.4:c.2296G>T	p.Asp766Tyr	p.D766Y	ENST00000377967	NM_021140.2	766	Gat/Tat						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66931257	66931257	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001297-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			628	116	323	0	ENST00000374690.3:c.1899G>T	p.Lys633Asn	p.K633N	ENST00000374690	NM_000044.3	633	aaG/aaT						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139404185	139404186	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0001297-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			114	27	200	0	ENST00000277541.6:c.2968_2969del	p.Ser990LeufsTer34	p.S990Lfs*34	ENST00000277541	NM_017617.3	990	AGc/c						NEWRECORD																																																																									
FAM46C	54855	MSKCC	GRCh37	1	118165695	118165695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	100	453	0	ENST00000369448.3:c.205G>A	p.Val69Ile	p.V69I	ENST00000369448	NM_017709.3	69	Gtc/Atc						NEWRECORD																																																																									
CASP8	841	MSKCC	GRCh37	2	202149808	202149808	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	35	390	0	ENST00000358485.4:c.1249C>T	p.Gln417Ter	p.Q417*	ENST00000358485	NM_001080125.1	417	Cag/Tag						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47164591	47164591	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0004339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	55	285	0	ENST00000409792.3:c.1535C>G	p.Ser512Ter	p.S512*	ENST00000409792	NM_014159.6	512	tCa/tGa						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47165153	47165153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	100	317	0	ENST00000409792.3:c.973G>T	p.Glu325Ter	p.E325*	ENST00000409792	NM_014159.6	325	Gaa/Taa						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47165678	47165678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	106	483	0	ENST00000409792.3:c.448C>T	p.His150Tyr	p.H150Y	ENST00000409792	NM_014159.6	150	Cat/Tat						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56160642	56160642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	108	448	0	ENST00000399503.3:c.916C>T	p.Arg306Cys	p.R306C	ENST00000399503	NM_005921.1	306	Cgc/Tgc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112176386	112176386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	71	265	0	ENST00000257430.4:c.5095G>A	p.Glu1699Lys	p.E1699K	ENST00000257430	NM_000038.5	1699	Gag/Aag						NEWRECORD																																																																									
HIST1H3H	8357	MSKCC	GRCh37	6	27778004	27778004	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1142	240	1168	0	ENST00000369163.2:c.153G>C	p.Glu51Asp	p.E51D	ENST00000369163	NM_003536.2	51	gaG/gaC						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108117778	108117778	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	53	273	0	ENST00000278616.4:c.989G>T	p.Gly330Val	p.G330V	ENST00000278616	NM_000051.3	330	gGa/gTa						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110437836	110437836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	52	244	0	ENST00000375856.3:c.565C>T	p.Pro189Ser	p.P189S	ENST00000375856	NM_003749.2	189	Ccc/Tcc						NEWRECORD																																																																									
RAD51B	5890	MSKCC	GRCh37	14	68934917	68934917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	90	411	0	ENST00000487270.1:c.986C>T	p.Pro329Leu	p.P329L	ENST00000487270	NM_133509.3	329	cCc/cTc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591895	48591895	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	82	440	0	ENST00000342988.3:c.1058A>G	p.Tyr353Cys	p.Y353C	ENST00000342988	NM_005359.5	353	tAc/tGc						NEWRECORD																																																																									
AXL	558	MSKCC	GRCh37	19	41749520	41749520	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0004339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	136	561	0	ENST00000301178.4:c.1446-1G>C		p.X482_splice	ENST00000301178	NM_021913.4	482							NEWRECORD																																																																									
VHL	7428	MSKCC	GRCh37	3	10183532	10183532	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0000459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			88	50	513	0	ENST00000256474.2:c.1A>G	p.Met1?	p.M1?	ENST00000256474	NM_000551.3	1	Atg/Gtg						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			40	10	347	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46243881	46243881	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			105	78	528	0	ENST00000334344.6:c.1975T>C	p.Ser659Pro	p.S659P	ENST00000334344	NM_152641.2	659	Tct/Cct						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89831438	89831438	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			131	86	521	0	ENST00000389301.3:c.2638C>T	p.Arg880Ter	p.R880*	ENST00000389301	NM_000135.2	880	Cga/Tga						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10599973	10599973	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			136	12	685	0	ENST00000171111.5:c.1603G>T	p.Glu535Ter	p.E535*	ENST00000171111	NM_203500.1	535	Gag/Tag						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602646	10602646	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			53	39	500	1	ENST00000171111.5:c.932A>G	p.His311Arg	p.H311R	ENST00000171111	NM_203500.1	311	cAc/cGc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			37	53	655	1	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29550459	29550460	+	splice_acceptor_variant,intron_variant	Splice_Site	DNP	CA	CA	GC			P-0000459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			91	38	311	0	ENST00000358273.4:c.1722-3_1722-2delCAinsGC		p.X574_splice	ENST00000358273	NM_001042492.2	574							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0001795-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			496	477	646	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag						NEWRECORD																																																																									
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001795-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1252	350	613	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0001440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			167	182	234	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65335065	65335065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			626	104	300	0	ENST00000342505.4:c.576G>T	p.Met192Ile	p.M192I	ENST00000342505	NM_002227.2	192	atG/atT						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52702662	52702662	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0001440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	175	303	0	ENST00000394830.3:c.237-1G>C		p.X79_splice	ENST00000394830	NM_018313.4	79							NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149433934	149433934	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			496	99	370	0	ENST00000286301.3:c.2714A>T	p.Gln905Leu	p.Q905L	ENST00000286301	NM_005211.3	905	cAg/cTg						NEWRECORD																																																																									
CDK8	1024	MSKCC	GRCh37	13	26967566	26967566	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			486	233	438	0	ENST00000381527.3:c.709C>T	p.Arg237Ter	p.R237*	ENST00000381527	NM_001260.1	237	Cga/Tga						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52440912	52440912	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	85	293	1	ENST00000460680.1:c.592delG	p.Glu198ArgfsTer33	p.E198Rfs*33	ENST00000460680	NM_004656.3	198	Gag/ag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0003156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	740	337	1	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108186599	108186599	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	88	322	0	ENST00000278616.4:c.6056A>G	p.Tyr2019Cys	p.Y2019C	ENST00000278616	NM_000051.3	2019	tAt/tGt						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187630465	187630465	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1439256953		P-0003156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	335	468	0	ENST00000441802.2:c.517G>A	p.Ala173Thr	p.A173T	ENST00000441802	NM_005245.3	173	Gcc/Acc						NEWRECORD																																																																									
BIRC3	330	MSKCC	GRCh37	11	102206912	102206912	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	91	524	0	ENST00000263464.3:c.1540C>G	p.Leu514Val	p.L514V	ENST00000263464	NM_001165.4	514	Ctg/Gtg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108168100	108168100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	51	345	0	ENST00000278616.4:c.4996G>C	p.Glu1666Gln	p.E1666Q	ENST00000278616	NM_000051.3	1666	Gaa/Caa						NEWRECORD																																																																									
ZRSR2	8233	MSKCC	GRCh37	X	15838440	15838440	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0003156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	72	256	0	ENST00000307771.7:c.937+1G>T		p.X313_splice	ENST00000307771	NM_005089.3	313							NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66931318	66931318	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200737258		P-0003156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	114	288	0	ENST00000374690.3:c.1960G>A	p.Glu654Lys	p.E654K	ENST00000374690	NM_000044.3	654	Gag/Aag						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47044718	47044719	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0003156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	120	193	0	ENST00000329236.7:c.1885_1886del	p.Gln629AlafsTer12	p.Q629Afs*12	ENST00000329236	NM_001204466.1	628	agACag/agag						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	149983152	149983152	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	80	476	1	ENST00000253339.5:c.3106A>G	p.Thr1036Ala	p.T1036A	ENST00000253339		1036	Aca/Gca						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55273218	55273218	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	285	613	0	ENST00000275493.2:c.3541G>C	p.Ala1181Pro	p.A1181P	ENST00000275493	NM_005228.3	1181	Gcc/Ccc						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63850921	63850921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	60	391	0	ENST00000279873.7:c.1699C>A	p.Pro567Thr	p.P567T	ENST00000279873	NM_032199.2	567	Cct/Act						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	10032296	10032296	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	94	295	0	ENST00000330684.3:c.527T>A	p.Ile176Asn	p.I176N	ENST00000330684	NM_001134407.1	176	aTc/aAc						NEWRECORD																																																																									
RARA	5914	MSKCC	GRCh37	17	38510741	38510741	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	36	232	0	ENST00000254066.5:c.995T>A	p.Ile332Asn	p.I332N	ENST00000254066	NM_000964.3	332	aTc/aAc						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692858	89692875	+	inframe_deletion	In_Frame_Del	DEL	AGATGACAATCATGTTGC	AGATGACAATCATGTTGC	-			P-0004227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			62	41	108	0	ENST00000371953.3:c.344_361del	p.Asp115_Ala120del	p.D115_A120del	ENST00000371953	NM_000314.4	114	gaAGATGACAATCATGTTGCa/gaa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27099349	27099368	+	frameshift_variant	Frame_Shift_Del	DEL	GACTCCACATTCCAGAAGCG	GACTCCACATTCCAGAAGCG	-			P-0004227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	82	459	0	ENST00000324856.7:c.3588_3607del	p.Asp1196GlufsTer17	p.D1196Efs*17	ENST00000324856	NM_006015.4	1196	GACTCCACATTCCAGAAGCGg/g						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0000736-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	199	397	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000736-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			359	127	391	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112170691	112170691	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000736-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			162	138	304	1	ENST00000257430.4:c.1787C>A	p.Ser596Ter	p.S596*	ENST00000257430	NM_000038.5	596	tCa/tAa						NEWRECORD																																																																									
FGFR2	2263	MSKCC	GRCh37	10	123310820	123310820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000736-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			359	58	464	0	ENST00000358487.5:c.608G>A	p.Arg203His	p.R203H	ENST00000358487	NM_000141.4	203	cGc/cAc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40730802	40730802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000736-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			340	126	175	0	ENST00000373198.4:c.3733G>A	p.Gly1245Arg	p.G1245R	ENST00000373198	NM_133170.3	1245	Gga/Aga						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40739064	40739064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000736-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	184	255	0	ENST00000373198.4:c.3220G>A	p.Val1074Ile	p.V1074I	ENST00000373198	NM_133170.3	1074	Gtt/Att						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175417	112175418	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0000736-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			193	60	206	0	ENST00000257430.4:c.4127_4128delAT	p.Tyr1376CysfsTer9	p.Y1376Cfs*9	ENST00000257430	NM_000038.5	1376	TAt/t						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70119866	70119866	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000736-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	327	343	0	ENST00000245479.2:c.868del	p.Asp290MetfsTer93	p.D290Mfs*93	ENST00000245479	NM_000346.3	290	Gat/at						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37618601	37618601	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000842-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			182	106	195	0	ENST00000447079.4:c.277C>T	p.Arg93Ter	p.R93*	ENST00000447079	NM_015083.1	93	Cga/Tga						NEWRECORD																																																																									
PIK3CD	5293	MSKCC	GRCh37	1	9784040	9784040	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	198	406	0	ENST00000377346.4:c.2608C>T	p.Arg870Ter	p.R870*	ENST00000377346	NM_005026.3	870	Cga/Tga						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70332459	70332459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	196	478	0	ENST00000373644.4:c.364G>A	p.Val122Ile	p.V122I	ENST00000373644	NM_030625.2	122	Gta/Ata						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000861-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			225	12	118	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc						NEWRECORD																																																																									
RPTOR	57521	MSKCC	GRCh37	17	78857688	78857688	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000861-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			455	48	275	0	ENST00000306801.3:c.1758G>C	p.Gln586His	p.Q586H	ENST00000306801	NM_020761.2	586	caG/caC						NEWRECORD																																																																									
PIK3CB	5291	MSKCC	GRCh37	3	138417921	138417921	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000861-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	48	162	0	ENST00000289153.2:c.1598del	p.Lys533SerfsTer6	p.K533Sfs*6	ENST00000289153	NM_006219.2	533	aAg/ag						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32190321	32190321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001092-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	65	135	0	ENST00000375023.3:c.418C>T	p.Arg140Cys	p.R140C	ENST00000375023	NM_004557.3	140	Cgc/Tgc						NEWRECORD																																																																									
BMPR1A	657	MSKCC	GRCh37	10	88681426	88681426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001092-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			444	230	192	1	ENST00000372037.3:c.1316A>G	p.Glu439Gly	p.E439G	ENST00000372037	NM_004329.2	439	gAg/gGg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49445023	49445023	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001092-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			146	107	71	0	ENST00000301067.7:c.2443C>A	p.Leu815Met	p.L815M	ENST00000301067	NM_003482.3	815	Ctg/Atg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577561	7577561	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001092-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			177	228	214	0	ENST00000269305.4:c.720T>G	p.Ser240Arg	p.S240R	ENST00000269305	NM_001126112.2	240	agT/agG						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41419958	41419958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001092-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			716	241	394	1	ENST00000373198.4:c.363C>A	p.Asn121Lys	p.N121K	ENST00000373198	NM_133170.3	121	aaC/aaA						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266080	41266097	+	inframe_deletion	In_Frame_Del	DEL	AGCAACAGTCTTACCTGG	AGCAACAGTCTTACCTGG	-			P-0001092-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			878	122	224	0	ENST00000349496.5:c.78_95del	p.Gln26_Asp32delinsHis	p.Q26_D32delinsH	ENST00000349496	NM_001904.3	26	cAGCAACAGTCTTACCTGGac/cac						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000470-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			132	234	292	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0000470-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			121	182	186	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70451308	70451308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000470-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			562	40	464	0	ENST00000373644.4:c.6148C>A	p.Gln2050Lys	p.Q2050K	ENST00000373644	NM_030625.2	2050	Cag/Aag						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49033947	49033947	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000470-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			176	208	323	0	ENST00000267163.4:c.2084T>A	p.Met695Lys	p.M695K	ENST00000267163	NM_000321.2	695	aTg/aAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0002994-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			155	408	541	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175175	112175175	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002994-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	40	237	0	ENST00000257430.4:c.3885del	p.Ala1296GlnfsTer9	p.A1296Qfs*9	ENST00000257430	NM_000038.5	1295	gAa/ga						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116397532	116397532	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002994-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			228	275	564	1	ENST00000397752.3:c.1904A>G	p.Asn635Ser	p.N635S	ENST00000397752	NM_000245.2	635	aAt/aGt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174091	112174094	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0002994-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	143	435	4	ENST00000257430.4:c.2802_2805delTTAC	p.Tyr935IlefsTer19	p.Y935Ifs*19	ENST00000257430	NM_000038.5	934	ACTTac/ac						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0000702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			490	156	190	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa						NEWRECORD																																																																									
HIST1H3B	8358	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			241	55	62	0	ENST00000244661.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000244661	NM_003537.3	106	Gag/Cag						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226567824	226567824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			934	149	170	0	ENST00000366794.5:c.1342G>A	p.Glu448Lys	p.E448K	ENST00000366794	NM_001618.3	448	Gaa/Aaa						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198266494	198266494	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs756424171		P-0000702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	122	157	0	ENST00000335508.6:c.2342A>G	p.Asp781Gly	p.D781G	ENST00000335508	NM_012433.2	781	gAt/gGt						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128851900	128851900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	102	177	0	ENST00000249373.3:c.1972G>C	p.Glu658Gln	p.E658Q	ENST00000249373	NM_005631.4	658	Gag/Cag						NEWRECORD																																																																									
BBC3	27113	MSKCC	GRCh37	19	47725076	47725076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	145	236	0	ENST00000449228.1:c.668G>A	p.Arg223Gln	p.R223Q	ENST00000449228	NM_001127240.2	223	cGa/cAa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002673-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			538	276	326	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
RAF1	5894	MSKCC	GRCh37	3	12626377	12626377	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002673-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			464	178	400	0	ENST00000251849.4:c.1772A>C	p.Lys591Thr	p.K591T	ENST00000251849	NM_002880.3	591	aAa/aCa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579346	7579346	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002673-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			280	116	256	0	ENST00000269305.4:c.341del	p.Leu114CysfsTer9	p.L114Cfs*9	ENST00000269305	NM_001126112.2	114	tTg/tg						NEWRECORD																																																																									
SOCS1	8651	MSKCC	GRCh37	16	11349127	11349127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002225-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			383	98	133	0	ENST00000332029.2:c.209C>T	p.Ala70Val	p.A70V	ENST00000332029	NM_003745.1	70	gCc/gTc						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115722	8115722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001505-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	134	437	0	ENST00000346208.3:c.1068G>A	p.Met356Ile	p.M356I	ENST00000346208		356	atG/atA						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42793442	42793442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001505-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	46	259	0	ENST00000575354.2:c.1244G>A	p.Arg415Gln	p.R415Q	ENST00000575354	NM_015125.3	415	cGg/cAg						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002275-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			823	79	410	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
CDC73	79577	MSKCC	GRCh37	1	193094339	193094339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002275-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			775	45	363	0	ENST00000367435.3:c.229C>T	p.Arg77Cys	p.R77C	ENST00000367435	NM_024529.4	77	Cgt/Tgt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0003573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	203	335	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152201856	152201856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	104	374	0	ENST00000206249.3:c.710G>A	p.Cys237Tyr	p.C237Y	ENST00000206249	NM_000125.3	237	tGc/tAc						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49030398	49030398	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	125	322	1	ENST00000267163.4:c.1873A>G	p.Thr625Ala	p.T625A	ENST00000267163	NM_000321.2	625	Act/Gct						NEWRECORD																																																																									
GNA11	2767	MSKCC	GRCh37	19	3113463	3113463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	79	375	0	ENST00000078429.4:c.457C>G	p.Leu153Val	p.L153V	ENST00000078429	NM_002067.2	153	Ctc/Gtc						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0003859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	34	406	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56440916	56440916	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	27	329	0	ENST00000407977.2:c.421A>G	p.Ile141Val	p.I141V	ENST00000407977		141	Atc/Gtc						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108225556	108225556	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	188	344	0	ENST00000278616.4:c.8805G>T	p.Met2935Ile	p.M2935I	ENST00000278616	NM_000051.3	2935	atG/atT						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47088079	47088092	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGATATACTGAA	CTGGATATACTGAA	-			P-0004644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	126	297	0	ENST00000409792.3:c.6983_6996del	p.Leu2328ArgfsTer36	p.L2328Rfs*36	ENST00000409792	NM_014159.6	2328	cTTCAGTATATCCAG/c						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198266771	198266771	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	31	241	0	ENST00000335508.6:c.2161A>T	p.Ile721Phe	p.I721F	ENST00000335508	NM_012433.2	721	Atc/Ttc						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86642492	86642492	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	11	171	0	ENST00000274376.6:c.1053G>A	p.Trp351Ter	p.W351*	ENST00000274376	NM_002890.2	351	tgG/tgA						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41729648	41729648	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	20	360	0	ENST00000242208.4:c.881T>G	p.Met294Arg	p.M294R	ENST00000242208	NM_002192.2	294	aTg/aGg						NEWRECORD																																																																									
XRCC2	7516	MSKCC	GRCh37	7	152345882	152345882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	21	350	0	ENST00000359321.1:c.688G>A	p.Ala230Thr	p.A230T	ENST00000359321	NM_005431.1	230	Gca/Aca						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145738149	145738149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	12	269	0	ENST00000428558.2:c.2761G>A	p.Glu921Lys	p.E921K	ENST00000428558	NM_004260.3	921	Gag/Aag						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29683977	29683977	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0003302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	17	259	0	ENST00000358273.4:c.7739-1G>C		p.X2580_splice	ENST00000358273	NM_001042492.2	2580							NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123164935	123164935	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	15	284	0	ENST00000218089.9:c.248T>A	p.Met83Lys	p.M83K	ENST00000218089	NM_001042749.1	83	aTg/aAg						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098959	178098982	+	inframe_deletion	In_Frame_Del	DEL	TCTATATCTTGCCTCCAAAGTATG	TCTATATCTTGCCTCCAAAGTATG	-			P-0003302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	31	212	0	ENST00000397062.3:c.63_86del	p.Ile22_Asp29del	p.I22_D29del	ENST00000397062	NM_006164.4	21	gaCATACTTTGGAGGCAAGATATAGAt/gat						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0004364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	385	584	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27105811	27105811	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	220	593	0	ENST00000324856.7:c.5422A>T	p.Lys1808Ter	p.K1808*	ENST00000324856	NM_006015.4	1808	Aag/Tag						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15276722	15276722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	221	666	0	ENST00000263388.2:c.5543G>A	p.Arg1848His	p.R1848H	ENST00000263388	NM_000435.2	1848	cGt/cAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	112	536	1	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25470497	25470497	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	50	480	0	ENST00000264709.3:c.977G>T	p.Arg326Leu	p.R326L	ENST00000264709	NM_175629.2	326	cGc/cTc						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70349988	70349988	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	278	277	0	ENST00000374080.3:c.3971T>A	p.Ile1324Asn	p.I1324N	ENST00000374080		1324	aTt/aAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			76	21	119	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1131691025		P-0001459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			305	226	324	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55371734	55371734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	34	129	0	ENST00000297316.4:c.424C>T	p.Arg142Cys	p.R142C	ENST00000297316	NM_022454.3	142	Cgc/Tgc						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89858913	89858913	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199967286		P-0001459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	29	152	0	ENST00000389301.3:c.1049G>A	p.Arg350Gln	p.R350Q	ENST00000389301	NM_000135.2	350	cGg/cAg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40735470	40735470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			446	139	312	0	ENST00000373198.4:c.3403G>A	p.Val1135Met	p.V1135M	ENST00000373198	NM_133170.3	1135	Gtg/Atg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	55	280	0	ENST00000257430.4:c.3340del	p.Arg1114GlufsTer12	p.R1114Efs*12	ENST00000257430	NM_000038.5	1114	Cga/ga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0003308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	237	257	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	62	140	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0003308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	222	323	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga						NEWRECORD																																																																									
FH	2271	MSKCC	GRCh37	1	241680546	241680546	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	86	438	0	ENST00000366560.3:c.203A>G	p.Tyr68Cys	p.Y68C	ENST00000366560	NM_000143.3	68	tAt/tGt						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52610715	52610715	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0003308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	77	288	0	ENST00000394830.3:c.3459-1G>T		p.X1153_splice	ENST00000394830	NM_018313.4	1153							NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175322	112175322	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	50	265	0	ENST00000257430.4:c.4031C>G	p.Ser1344Ter	p.S1344*	ENST00000257430	NM_000038.5	1344	tCa/tGa						NEWRECORD																																																																									
GATA1	2623	MSKCC	GRCh37	X	48649545	48649545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	85	552	0	ENST00000376670.3:c.29G>A	p.Gly10Glu	p.G10E	ENST00000376670	NM_002049.3	10	gGg/gAg						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70361078	70361107	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGCAGCAGCAGCAACAGCAACAGCAGCAGC	AGCAGCAGCAGCAACAGCAACAGCAGCAGC	-			P-0003308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	84	146	0	ENST00000374080.3:c.6300_6329del		p.X2100_splice	ENST00000374080		2100							NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65303726	65303726	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000204-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1290	410	489	0	ENST00000342505.4:c.3029T>G	p.Leu1010Arg	p.L1010R	ENST00000342505	NM_002227.2	1010	cTt/cGt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000204-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			823	2161	364	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971163	21971163	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000204-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	35	107	0	ENST00000361570.3:c.361C>G	p.Pro121Ala	p.P121A	ENST00000361570	NM_058195.3	121	Cca/Gca						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49424092	49424092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000204-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1226	426	486	0	ENST00000301067.7:c.13970C>G	p.Ser4657Cys	p.S4657C	ENST00000301067	NM_003482.3	4657	tCt/tGt						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95562249	95562249	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000204-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1292	392	548	0	ENST00000343455.3:c.5008G>C	p.Glu1670Gln	p.E1670Q	ENST00000343455	NM_177438.2	1670	Gaa/Caa						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95562693	95562693	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000204-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1021	332	395	0	ENST00000343455.3:c.4564G>C	p.Asp1522His	p.D1522H	ENST00000343455	NM_177438.2	1522	Gac/Cac						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9560815	9560815	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143654195		P-0000204-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			917	285	406	1	ENST00000353224.5:c.967G>A	p.Glu323Lys	p.E323K	ENST00000353224	NM_177990.2	323	Gag/Aag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0002909-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	10	512	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0002909-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	15	426	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65332758	65332758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			387	195	472	0	ENST00000342505.4:c.781G>T	p.Val261Leu	p.V261L	ENST00000342505	NM_002227.2	261	Gtg/Ttg						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89521724	89521724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	124	353	0	ENST00000336596.2:c.2801G>A	p.Gly934Asp	p.G934D	ENST00000336596	NM_005233.5	934	gGt/gAt						NEWRECORD																																																																									
ETV1	2115	MSKCC	GRCh37	7	14026280	14026280	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			469	204	417	0	ENST00000405192.2:c.164A>T	p.Glu55Val	p.E55V	ENST00000405192	NM_001163147.1	55	gAa/gTa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8524968	8524968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	87	445	0	ENST00000356435.5:c.636C>A	p.Ser212Arg	p.S212R	ENST00000356435		212	agC/agA						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49438665	49438665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			299	92	393	0	ENST00000301067.7:c.4825C>T	p.His1609Tyr	p.H1609Y	ENST00000301067	NM_003482.3	1609	Cac/Tac						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115117427	115117427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	66	348	0	ENST00000257566.3:c.747G>T	p.Gln249His	p.Q249H	ENST00000257566	NM_016569.3	249	caG/caT						NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14014071	14014071	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			405	34	509	0	ENST00000311895.7:c.49G>T	p.Glu17Ter	p.E17*	ENST00000311895	NM_005236.2	17	Gag/Tag						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59926532	59926532	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			408	372	695	0	ENST00000259008.2:c.465A>T	p.Gln155His	p.Q155H	ENST00000259008	NM_032043.2	155	caA/caT						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55133860	55133860	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	89	443	0	ENST00000257290.5:c.1076delA	p.Asn359IlefsTer15	p.N359Ifs*15	ENST00000257290	NM_006206.4	358	gAa/ga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579456	7579456	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			215	147	303	0	ENST00000269305.4:c.231delA	p.Ala78GlnfsTer45	p.A78Qfs*45	ENST00000269305	NM_001126112.2	77	ccA/cc						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29677320	29677320	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			314	184	481	0	ENST00000358273.4:c.7442delG	p.Gly2481ValfsTer8	p.G2481Vfs*8	ENST00000358273	NM_001042492.2	2481	Ggt/gt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48584514	48584514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			228	154	290	1	ENST00000342988.3:c.692delG	p.Gly231AlafsTer10	p.G231Afs*10	ENST00000342988	NM_005359.5	229	ctG/ct						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	92	494	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0004678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	193	456	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
E2F3	1871	MSKCC	GRCh37	6	20488447	20488447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	54	743	0	ENST00000346618.3:c.1103A>G	p.His368Arg	p.H368R	ENST00000346618	NM_001949.4	368	cAc/cGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	143	247	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520017		P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	164	285	0	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc						NEWRECORD																																																																									
KMT2C	58508	MSKCC	GRCh37	7	151845941	151845941	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	250	392	0	ENST00000262189.6:c.13071G>A	p.Trp4357Ter	p.W4357*	ENST00000262189	NM_170606.2	4357	tgG/tgA						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	554	369	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11188582	11188582	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	201	322	0	ENST00000361445.4:c.5839G>C	p.Asp1947His	p.D1947H	ENST00000361445	NM_004958.3	1947	Gat/Cat						NEWRECORD																																																																									
MYCL1	4610	MSKCC	GRCh37	1	40366887	40366887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	89	295	0	ENST00000397332.2:c.310G>A	p.Glu104Lys	p.E104K	ENST00000397332	NM_001033082.2	104	Gaa/Aaa						NEWRECORD																																																																									
MPL	4352	MSKCC	GRCh37	1	43818313	43818313	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	113	302	0	ENST00000372470.3:c.1778G>C	p.Arg593Thr	p.R593T	ENST00000372470	NM_005373.2	593	aGa/aCa						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162749994	162749994	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	88	307	0	ENST00000367921.3:c.2526C>G	p.Phe842Leu	p.F842L	ENST00000367921	NM_006182.2	842	ttC/ttG						NEWRECORD																																																																									
MDM4	4194	MSKCC	GRCh37	1	204518519	204518519	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	96	279	0	ENST00000367182.3:c.1182C>G	p.Phe394Leu	p.F394L	ENST00000367182	NM_001278516.1	394	ttC/ttG						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25967092	25967092	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	60	262	0	ENST00000435504.4:c.2114G>C	p.Gly705Ala	p.G705A	ENST00000435504		705	gGt/gCt						NEWRECORD																																																																									
MSH2	4436	MSKCC	GRCh37	2	47698126	47698126	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	132	342	0	ENST00000233146.2:c.1684G>C	p.Glu562Gln	p.E562Q	ENST00000233146	NM_000251.2	562	Gag/Cag						NEWRECORD																																																																									
MST1R	4486	MSKCC	GRCh37	3	49935493	49935493	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	132	471	0	ENST00000296474.3:c.1871C>G	p.Ser624Ter	p.S624*	ENST00000296474	NM_002447.2	624	tCa/tGa						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89390953	89390953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	218	338	0	ENST00000336596.2:c.1019C>T	p.Ser340Leu	p.S340L	ENST00000336596	NM_005233.5	340	tCa/tTa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178942495	178942495	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	102	244	0	ENST00000263967.3:c.2302G>C	p.Glu768Gln	p.E768Q	ENST00000263967	NM_006218.2	768	Gag/Cag						NEWRECORD																																																																									
PHOX2B	8929	MSKCC	GRCh37	4	41747882	41747882	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	81	234	0	ENST00000226382.2:c.887C>G	p.Ser296Cys	p.S296C	ENST00000226382	NM_003924.3	296	tCt/tGt						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66535283	66535283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	105	237	0	ENST00000273854.3:c.178G>A	p.Glu60Lys	p.E60K	ENST00000273854	NM_004439.5	60	Gaa/Aaa						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106157521	106157521	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	112	336	0	ENST00000380013.4:c.2422G>T	p.Glu808Ter	p.E808*	ENST00000380013	NM_001127208.2	808	Gaa/Taa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187541019	187541019	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	75	231	0	ENST00000441802.2:c.6721C>G	p.Pro2241Ala	p.P2241A	ENST00000441802	NM_005245.3	2241	Cct/Gct						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38950054	38950054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	107	291	0	ENST00000357387.3:c.3896G>A	p.Arg1299Lys	p.R1299K	ENST00000357387	NM_152756.3	1299	aGa/aAa						NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	161970011	161970011	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	139	360	0	ENST00000366898.1:c.958G>T	p.Ala320Ser	p.A320S	ENST00000366898	NM_004562.2	320	Gca/Tca						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50444362	50444362	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	148	201	0	ENST00000331340.3:c.292G>T	p.Asp98Tyr	p.D98Y	ENST00000331340	NM_006060.4	98	Gac/Tac						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81386565	81386565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	211	335	0	ENST00000222390.5:c.422C>T	p.Ser141Phe	p.S141F	ENST00000222390	NM_000601.4	141	tCt/tTt						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412037	116412037	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	74	233	0	ENST00000397752.3:c.3022C>G	p.Pro1008Ala	p.P1008A	ENST00000397752	NM_000245.2	1008	Cca/Gca						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128851993	128851993	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	143	270	0	ENST00000249373.3:c.2065C>A	p.Pro689Thr	p.P689T	ENST00000249373	NM_005631.4	689	Cct/Act						NEWRECORD																																																																									
NBN	4683	MSKCC	GRCh37	8	90949279	90949279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	86	301	0	ENST00000265433.3:c.2209G>A	p.Glu737Lys	p.E737K	ENST00000265433	NM_002485.4	737	Gag/Aag						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8389380	8389380	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	229	288	0	ENST00000356435.5:c.4238C>A	p.Ala1413Asp	p.A1413D	ENST00000356435		1413	gCc/gAc						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87549090	87549090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	111	345	0	ENST00000277120.3:c.1647C>G	p.Ile549Met	p.I549M	ENST00000277120		549	atC/atG						NEWRECORD																																																																									
TRAF2	7186	MSKCC	GRCh37	9	139814713	139814713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	97	368	0	ENST00000247668.2:c.706G>A	p.Glu236Lys	p.E236K	ENST00000247668	NM_021138.3	236	Gag/Aag						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43600525	43600525	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	73	332	0	ENST00000355710.3:c.751G>C	p.Glu251Gln	p.E251Q	ENST00000355710	NM_020975.4	251	Gag/Cag						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100999795	100999795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	155	407	0	ENST00000325455.5:c.7G>A	p.Glu3Lys	p.E3K	ENST00000325455	NM_001202474.3	3	Gag/Aag						NEWRECORD																																																																									
CHEK1	1111	MSKCC	GRCh37	11	125503138	125503138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	117	376	0	ENST00000428830.2:c.505G>A	p.Gly169Ser	p.G169S	ENST00000428830	NM_001114121.2	169	Ggt/Agt						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	427491	427491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	130	390	0	ENST00000399788.2:c.2678G>A	p.Arg893Gln	p.R893Q	ENST00000399788	NM_001042603.1	893	cGa/cAa						NEWRECORD																																																																									
PTPN11	5781	MSKCC	GRCh37	12	112915689	112915689	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	226	309	0	ENST00000351677.2:c.962C>G	p.Ser321Ter	p.S321*	ENST00000351677	NM_002834.3	321	tCa/tGa						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133236053	133236053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	85	248	0	ENST00000320574.5:c.3103G>A	p.Glu1035Lys	p.E1035K	ENST00000320574	NM_006231.2	1035	Gag/Aag						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32911595	32911595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	168	556	0	ENST00000380152.3:c.3103G>A	p.Glu1035Lys	p.E1035K	ENST00000380152		1035	Gaa/Aaa						NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103527685	103527685	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	102	316	0	ENST00000355739.4:c.2993G>C	p.Arg998Thr	p.R998T	ENST00000355739	NM_000123.3	998	aGa/aCa						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88420166	88420166	+	stop_lost	Nonstop_Mutation	SNP	C	C	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	142	276	0	ENST00000360948.2:c.2520G>T	p.Ter840TyrextTer38	p.*840Yext*38	ENST00000360948	NM_001012338.2	840	taG/taT						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88472652	88472652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	34	197	0	ENST00000360948.2:c.1903G>A	p.Asp635Asn	p.D635N	ENST00000360948	NM_001012338.2	635	Gat/Aat						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99451967	99451967	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	95	325	0	ENST00000268035.6:c.1301G>C	p.Trp434Ser	p.W434S	ENST00000268035	NM_000875.3	434	tGg/tCg						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72992515	72992515	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	291	464	0	ENST00000268489.5:c.1530G>T	p.Glu510Asp	p.E510D	ENST00000268489	NM_006885.3	510	gaG/gaT						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29685633	29685633	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	104	323	0	ENST00000358273.4:c.8106C>A	p.Tyr2702Ter	p.Y2702*	ENST00000358273	NM_001042492.2	2702	taC/taA						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56432330	56432330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	89	252	0	ENST00000407977.2:c.2326G>A	p.Glu776Lys	p.E776K	ENST00000407977		776	Gag/Aag						NEWRECORD																																																																									
PPM1D	8493	MSKCC	GRCh37	17	58677881	58677881	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	194	344	0	ENST00000305921.3:c.106G>T	p.Glu36Ter	p.E36*	ENST00000305921	NM_003620.3	36	Gaa/Taa						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59761478	59761478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	205	291	0	ENST00000259008.2:c.2929G>T	p.Ala977Ser	p.A977S	ENST00000259008	NM_032043.2	977	Gca/Tca						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63534386	63534386	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	79	247	0	ENST00000307078.5:c.1135G>C	p.Glu379Gln	p.E379Q	ENST00000307078	NM_004655.3	379	Gaa/Caa						NEWRECORD																																																																									
BCL2	596	MSKCC	GRCh37	18	60795989	60795989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	60	247	0	ENST00000333681.4:c.589G>A	p.Ala197Thr	p.A197T	ENST00000333681		197	Gcc/Acc						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15276653	15276653	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	93	285	0	ENST00000263388.2:c.5612C>G	p.Ser1871Ter	p.S1871*	ENST00000263388	NM_000435.2	1871	tCa/tGa						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17942524	17942524	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	42	217	0	ENST00000458235.1:c.2764G>C	p.Asp922His	p.D922H	ENST00000458235	NM_000215.3	922	Gat/Cat						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9525055	9525055	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	336	371	0	ENST00000353224.5:c.1830G>T	p.Met610Ile	p.M610I	ENST00000353224	NM_177990.2	610	atG/atT						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31023626	31023626	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	80	355	0	ENST00000375687.4:c.3111G>T	p.Trp1037Cys	p.W1037C	ENST00000375687	NM_015338.5	1037	tgG/tgT						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41419837	41419837	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	70	259	0	ENST00000373198.4:c.484C>T	p.Gln162Ter	p.Q162*	ENST00000373198	NM_133170.3	162	Cag/Tag						NEWRECORD																																																																									
TMPRSS2	7113	MSKCC	GRCh37	21	42860356	42860356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	158	369	0	ENST00000398585.3:c.521C>T	p.Ser174Leu	p.S174L	ENST00000398585	NM_001135099.1	174	tCa/tTa						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41547924	41547924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	118	335	0	ENST00000263253.7:c.2905G>A	p.Glu969Lys	p.E969K	ENST00000263253	NM_001429.3	969	Gag/Aag						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41566552	41566552	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	196	312	0	ENST00000263253.7:c.4429G>C	p.Glu1477Gln	p.E1477Q	ENST00000263253	NM_001429.3	1477	Gag/Cag						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63412673	63412673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	221	401	0	ENST00000330258.3:c.494C>T	p.Pro165Leu	p.P165L	ENST00000330258	NM_152424.3	165	cCa/cTa						NEWRECORD																																																																									
HIST1H3C	8352	MSKCC	GRCh37	6	26045829	26045830	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	113	654	0	ENST00000540144.1:c.191_192delinsAA	p.Arg64Gln	p.R64Q	ENST00000540144	NM_003531.2	64	cGG/cAA						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	169	293	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0003368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	59	240	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120529700	120529700	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	49	250	0	ENST00000256646.2:c.757G>T	p.Glu253Ter	p.E253*	ENST00000256646	NM_024408.3	253	Gaa/Taa						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32163630	32163630	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	50	211	0	ENST00000375023.3:c.5596G>C	p.Ala1866Pro	p.A1866P	ENST00000375023	NM_004557.3	1866	Gcc/Ccc						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106545635	106545635	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	68	314	0	ENST00000359195.3:c.3112G>T	p.Gly1038Ter	p.G1038*	ENST00000359195	NM_002649.2	1038	Gga/Tga						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133233976	133233976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	56	262	0	ENST00000320574.5:c.3418G>A	p.Ala1140Thr	p.A1140T	ENST00000320574	NM_006231.2	1140	Gcc/Acc						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133234477	133234477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	67	278	0	ENST00000320574.5:c.3355C>T	p.Leu1119Phe	p.L1119F	ENST00000320574	NM_006231.2	1119	Ctt/Ttt						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42032315	42032315	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	104	629	0	ENST00000219905.7:c.4499A>T	p.Asn1500Ile	p.N1500I	ENST00000219905	NM_001164273.1	1500	aAt/aTt						NEWRECORD																																																																									
TOP1	7150	MSKCC	GRCh37	20	39745000	39745000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	57	313	0	ENST00000361337.2:c.1790C>T	p.Thr597Met	p.T597M	ENST00000361337	NM_003286.2	597	aCg/aTg						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	127	686	1	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98212187	98212187	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	89	838	0	ENST00000331920.6:c.3485T>G	p.Leu1162Arg	p.L1162R	ENST00000331920	NM_000264.3	1162	cTc/cGc						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	417173	417173	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0004489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	113	588	0	ENST00000399788.2:c.3379-2A>C		p.X1127_splice	ENST00000399788	NM_001042603.1	1127							NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5212403	5212403	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	149	864	0	ENST00000357368.4:c.4714C>G	p.Arg1572Gly	p.R1572G	ENST00000357368	NM_002850.3	1572	Cgg/Ggg						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5221024	5221024	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	56	607	0	ENST00000357368.4:c.3442C>G	p.Pro1148Ala	p.P1148A	ENST00000357368	NM_002850.3	1148	Ccc/Gcc						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000615-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1013	181	402	0	ENST00000347630.2:c.398T>G	p.Phe133Cys	p.F133C	ENST00000347630	NM_001007230.1	133	tTc/tGc						NEWRECORD																																																																									
MITF	4286	MSKCC	GRCh37	3	70008548	70008548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	97	238	0	ENST00000352241.4:c.1138C>T	p.Arg380Trp	p.R380W	ENST00000352241	NM_198159.2	380	Cgg/Tgg						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152415668	152415668	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	90	226	0	ENST00000206249.3:c.1518G>C	p.Gln506His	p.Q506H	ENST00000206249	NM_000125.3	506	caG/caC						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37627919	37627919	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	449	346	0	ENST00000447079.4:c.1834C>T	p.Gln612Ter	p.Q612*	ENST00000447079	NM_015083.1	612	Caa/Taa						NEWRECORD																																																																									
MALT1	10892	MSKCC	GRCh37	18	56400734	56400734	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	405	525	0	ENST00000348428.3:c.1328A>C	p.Gln443Pro	p.Q443P	ENST00000348428	NM_006785.3	443	cAa/cCa						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061209	38061209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	557	146	0	ENST00000250448.2:c.780del	p.Leu260PhefsTer61	p.L260Ffs*61	ENST00000250448	NM_004496.3	260	ttG/tt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0001499-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			870	120	333	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001499-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	81	389	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576881	7576881	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001499-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			464	109	432	0	ENST00000269305.4:c.965delC	p.Pro322HisfsTer23	p.P322Hfs*23	ENST00000269305	NM_001126112.2	322	cCa/ca						NEWRECORD																																																																									
ERRFI1	54206	MSKCC	GRCh37	1	8074231	8074231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	92	479	0	ENST00000377482.5:c.428C>A	p.Ala143Asp	p.A143D	ENST00000377482	NM_018948.3	143	gCc/gAc						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212289026	212289026	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0000683-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			92	52	258	0	ENST00000342788.4:c.2720G>C	p.Gly907Ala	p.G907A	ENST00000342788	NM_005235.2	907	gGa/gCa						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89259452	89259452	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000683-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			117	34	344	0	ENST00000336596.2:c.596T>A	p.Phe199Tyr	p.F199Y	ENST00000336596	NM_005233.5	199	tTc/tAc						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38959898	38959898	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000683-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	12	242	0	ENST00000357387.3:c.2034A>C	p.Lys678Asn	p.K678N	ENST00000357387	NM_152756.3	678	aaA/aaC						NEWRECORD																																																																									
MAP2K2	5605	MSKCC	GRCh37	19	4099315	4099315	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000683-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			229	101	397	0	ENST00000262948.5:c.803C>G	p.Pro268Arg	p.P268R	ENST00000262948	NM_030662.3	268	cCc/cGc						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5244383	5244383	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000683-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			118	30	362	0	ENST00000357368.4:c.1099T>A	p.Tyr367Asn	p.Y367N	ENST00000357368	NM_002850.3	367	Tat/Aat						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578230	7578230	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000683-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			83	162	429	0	ENST00000269305.4:c.619delG	p.Asp207MetfsTer40	p.D207Mfs*40	ENST00000269305	NM_001126112.2	207	Gat/at						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106156271	106156271	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777619320		P-0001957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			96	66	300	0	ENST00000380013.4:c.1172C>T	p.Ser391Phe	p.S391F	ENST00000380013	NM_001127208.2	391	tCc/tTc						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115112248	115112248	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			39	28	52	0	ENST00000257566.3:c.1492C>A	p.Leu498Met	p.L498M	ENST00000257566	NM_016569.3	498	Ctg/Atg						NEWRECORD																																																																									
ALOX12B	242	MSKCC	GRCh37	17	7990733	7990733	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			106	43	250	0	ENST00000319144.4:c.28A>G	p.Thr10Ala	p.T10A	ENST00000319144	NM_001139.2	10	Aca/Gca						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68856058	68856058	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			51	57	410	1	ENST00000261769.5:c.1866del	p.Asn622LysfsTer9	p.N622Kfs*9	ENST00000261769	NM_004360.3	622	aaT/aa						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001751-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			390	246	336	0	ENST00000206249.3:c.1609T>G	p.Tyr537Asp	p.Y537D	ENST00000206249	NM_000125.3	537	Tat/Gat						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3778564	3778564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001751-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			489	133	482	0	ENST00000262367.5:c.6484G>A	p.Gly2162Arg	p.G2162R	ENST00000262367	NM_004380.2	2162	Gga/Aga						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0004526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	23	497	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061123	38061171	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCC	CCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCC	-			P-0004526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	18	87	0	ENST00000250448.2:c.818_866del	p.Gly273AlafsTer32	p.G273Afs*32	ENST00000250448	NM_004496.3	273	gGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGc/gc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000745-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			602	72	295	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0000745-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			82	27	187	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0000745-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	51	252	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc						NEWRECORD																																																																									
ERCC3	2071	MSKCC	GRCh37	2	128015293	128015293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770995913		P-0000745-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			180	78	174	0	ENST00000285398.2:c.2228G>A	p.Arg743His	p.R743H	ENST00000285398	NM_000122.1	743	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0000745-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			237	81	186	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39613803	39613803	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000745-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	22	248	0	ENST00000262039.4:c.1721A>T	p.Gln574Leu	p.Q574L	ENST00000262039	NM_002647.2	574	cAg/cTg						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48941633	48941633	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	197	348	0	ENST00000267163.4:c.943G>T	p.Glu315Ter	p.E315*	ENST00000267163	NM_000321.2	315	Gaa/Taa						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42057138	42057138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	436	698	0	ENST00000219905.7:c.7799C>T	p.Pro2600Leu	p.P2600L	ENST00000219905	NM_001164273.1	2600	cCg/cTg						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37618616	37618616	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	445	409	0	ENST00000447079.4:c.292G>T	p.Glu98Ter	p.E98*	ENST00000447079	NM_015083.1	98	Gaa/Taa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576827	7576857	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGATAAGAGGTCCCAAGACTTAGTACCTGAA	TGATAAGAGGTCCCAAGACTTAGTACCTGAA	-			P-0003172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	116	291	0	ENST00000269305.4:c.989_993+26del		p.X330_splice	ENST00000269305	NM_001126112.2	330							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0000263-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			407	94	376	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149460516	149460516	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000263-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	46	245	0	ENST00000286301.3:c.121C>T	p.Arg41Ter	p.R41*	ENST00000286301	NM_005211.3	41	Cga/Tga						NEWRECORD																																																																									
CDKN1B	1027	MSKCC	GRCh37	12	12871864	12871864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000263-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			152	10	72	0	ENST00000228872.4:c.581G>A	p.Arg194Lys	p.R194K	ENST00000228872	NM_004064.3	194	aGa/aAa						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3823843	3823843	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000263-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	51	246	0	ENST00000262367.5:c.2372G>C	p.Ser791Thr	p.S791T	ENST00000262367	NM_004380.2	791	aGc/aCc						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0000655-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			614	81	413	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt						NEWRECORD																																																																									
RYBP	23429	MSKCC	GRCh37	3	72427658	72427658	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000655-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			451	161	370	0	ENST00000477973.2:c.830T>G	p.Ser278Ala	p.S278A	ENST00000477973	NM_012234.5	278	Tcc/Gcc						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55370903	55370903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000655-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			405	52	328	0	ENST00000297316.4:c.205C>T	p.Arg69Trp	p.R69W	ENST00000297316	NM_022454.3	69	Cgg/Tgg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380277	25380277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000655-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			557	193	484	0	ENST00000256078.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	61	Caa/Aaa						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061469	38061469	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000655-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	109	292	0	ENST00000250448.2:c.520T>A	p.Ser174Thr	p.S174T	ENST00000250448	NM_004496.3	174	Tcg/Acg						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	169	306	1	ENST00000397062.3:c.92G>A	p.Gly31Glu	p.G31E	ENST00000397062	NM_006164.4	31	gGa/gAa						NEWRECORD																																																																									
MAP2K1	5604	MSKCC	GRCh37	15	66727453	66727453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	356	331	0	ENST00000307102.5:c.169A>G	p.Lys57Glu	p.K57E	ENST00000307102	NM_002755.3	57	Aag/Gag						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152382143	152382143	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	169	290	0	ENST00000206249.3:c.1253T>A	p.Val418Glu	p.V418E	ENST00000206249	NM_000125.3	418	gTa/gAa						NEWRECORD																																																																									
CBL	867	MSKCC	GRCh37	11	119170432	119170432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	196	353	3	ENST00000264033.4:c.2662G>A	p.Ala888Thr	p.A888T	ENST00000264033	NM_005188.3	888	Gcc/Acc						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			113	72	150	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			50	81	205	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68855984	68855984	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			71	109	289	0	ENST00000261769.5:c.1792C>T	p.Arg598Ter	p.R598*	ENST00000261769	NM_004360.3	598	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7572986	7572986	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			30	78	161	0	ENST00000269305.4:c.1123C>T	p.Gln375Ter	p.Q375*	ENST00000269305	NM_001126112.2	375	Cag/Tag						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11293486	11293486	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	120	314	0	ENST00000361445.4:c.2390A>T	p.Asn797Ile	p.N797I	ENST00000361445	NM_004958.3	797	aAt/aTt						NEWRECORD																																																																									
RFWD2	64326	MSKCC	GRCh37	1	176104168	176104168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			244	36	194	0	ENST00000367669.3:c.946G>A	p.Glu316Lys	p.E316K	ENST00000367669	NM_022457.5	316	Gaa/Aaa						NEWRECORD																																																																									
XPO1	7514	MSKCC	GRCh37	2	61715353	61715353	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	60	269	0	ENST00000401558.2:c.2260G>T	p.Glu754Ter	p.E754*	ENST00000401558	NM_003400.3	754	Gaa/Taa						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215617239	215617239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	98	284	0	ENST00000260947.4:c.1609G>A	p.Glu537Lys	p.E537K	ENST00000260947	NM_000465.2	537	Gaa/Aaa						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47125785	47125785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			159	94	156	0	ENST00000409792.3:c.5485C>T	p.Gln1829Ter	p.Q1829*	ENST00000409792	NM_014159.6	1829	Cag/Tag						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106155622	106155622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			188	113	175	0	ENST00000380013.4:c.523G>A	p.Glu175Lys	p.E175K	ENST00000380013	NM_001127208.2	175	Gaa/Aaa						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106155988	106155988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			196	100	220	0	ENST00000380013.4:c.889G>A	p.Asp297Asn	p.D297N	ENST00000380013	NM_001127208.2	297	Gat/Aat						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1293718	1293718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			153	94	131	0	ENST00000310581.5:c.1283G>A	p.Arg428Gln	p.R428Q	ENST00000310581	NM_198253.2	428	cGg/cAg						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131939060	131939060	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			127	50	221	0	ENST00000265335.6:c.2276G>T	p.Arg759Ile	p.R759I	ENST00000265335		759	aGa/aTa						NEWRECORD																																																																									
IRF4	3662	MSKCC	GRCh37	6	405086	405086	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	110	258	0	ENST00000380956.4:c.1168G>C	p.Glu390Gln	p.E390Q	ENST00000380956	NM_001195286.1	390	Gag/Cag						NEWRECORD																																																																									
NKX3-1	4824	MSKCC	GRCh37	8	23538863	23538863	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			57	118	229	0	ENST00000380871.4:c.576G>C	p.Glu192Asp	p.E192D	ENST00000380871	NM_006167.3	192	gaG/gaC						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32913233	32913233	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			134	113	188	0	ENST00000380152.3:c.4741G>T	p.Glu1581Ter	p.E1581*	ENST00000380152		1581	Gag/Tag						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	11984698	11984698	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			29	48	69	0	ENST00000353533.5:c.244G>T	p.Glu82Ter	p.E82*	ENST00000353533	NM_003010.3	82	Gag/Tag						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41245866	41245866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			92	105	288	0	ENST00000357654.3:c.1682C>T	p.Ser561Phe	p.S561F	ENST00000357654	NM_007294.3	561	tCt/tTt						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63533676	63533676	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367697282		P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			63	92	239	0	ENST00000307078.5:c.1478C>T	p.Ser493Leu	p.S493L	ENST00000307078	NM_004655.3	493	tCg/tTg						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10265400	10265400	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			158	99	208	0	ENST00000340748.4:c.1646C>G	p.Ser549Cys	p.S549C	ENST00000340748		549	tCc/tGc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207153	1207155	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs1414068445		P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	91	245	0	ENST00000326873.7:c.250_252del	p.Lys84del	p.K84del	ENST00000326873	NM_000455.4	81	AAG/-						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000531-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			676	19	427	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	412	408	0	ENST00000269305.4:c.823T>C	p.Cys275Arg	p.C275R	ENST00000269305	NM_001126112.2	275	Tgt/Cgt						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106520000	106520000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	160	316	0	ENST00000359195.3:c.2428C>A	p.Pro810Thr	p.P810T	ENST00000359195	NM_002649.2	810	Cca/Aca						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142297540	142297540	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	157	294	0	ENST00000350721.4:c.7G>C	p.Glu3Gln	p.E3Q	ENST00000350721	NM_001184.3	3	Gaa/Caa						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2968266	2968266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	145	324	1	ENST00000396946.4:c.1720G>A	p.Val574Ile	p.V574I	ENST00000396946	NM_032415.4	574	Gtc/Atc						NEWRECORD																																																																									
RAD21	5885	MSKCC	GRCh37	8	117868976	117868976	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1579	185	398	0	ENST00000297338.2:c.723C>G	p.Ile241Met	p.I241M	ENST00000297338	NM_006265.2	241	atC/atG						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17955156	17955156	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	271	226	0	ENST00000458235.1:c.71G>C	p.Gly24Ala	p.G24A	ENST00000458235	NM_000215.3	24	gGt/gCt						NEWRECORD																																																																									
ERG	2078	MSKCC	GRCh37	21	39795338	39795338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	258	282	0	ENST00000288319.7:c.382C>T	p.Pro128Ser	p.P128S	ENST00000288319	NM_182918.3	128	Cca/Tca						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41548249	41548249	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	158	244	0	ENST00000263253.7:c.3037G>C	p.Glu1013Gln	p.E1013Q	ENST00000263253	NM_001429.3	1013	Gaa/Caa						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53239597	53239597	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0003647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	117	306	0	ENST00000375401.3:c.1745C>T	p.Pro582Leu	p.P582L	ENST00000375401	NM_004187.3	582	cCa/cTa						NEWRECORD																																																																									
H3F3C	440093	MSKCC	GRCh37	12	31944769	31944812	+	frameshift_variant	Frame_Shift_Del	DEL	GCACACAGGTTAGTATCTTCCAACAGACCCACCAGGTACGCTTC	GCACACAGGTTAGTATCTTCCAACAGACCCACCAGGTACGCTTC	-			P-0003647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	138	190	0	ENST00000340398.3:c.289_332del	p.Glu97HisfsTer4	p.E97Hfs*4	ENST00000340398	NM_001013699.2	97	GAAGCGTACCTGGTGGGTCTGTTGGAAGATACTAACCTGTGTGCc/c						NEWRECORD																																																																									
H3F3C	440093	MSKCC	GRCh37	12	31944819	31944820	+	missense_variant	Missense_Mutation	DNP	CT	CT	TA			P-0003647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	146	443	0	ENST00000340398.3:c.281_282delinsTA	p.Glu94Val	p.E94V	ENST00000340398	NM_001013699.2	94	gAG/gTA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0003753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	53	400	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0003753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	13	348	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0003753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	43	293	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0003753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	21	165	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0003753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	27	138	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63554630	63554630	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	39	170	0	ENST00000307078.5:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000307078	NM_004655.3	37	Cag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002095-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			756	32	460	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	165	446	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	80	398	0	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106763	27106763	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	64	375	0	ENST00000324856.7:c.6374T>G	p.Leu2125Arg	p.L2125R	ENST00000324856	NM_006015.4	2125	cTc/cGc						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28964083	28964083	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	79	472	0	ENST00000282397.4:c.1819C>A	p.Gln607Lys	p.Q607K	ENST00000282397	NM_002019.4	607	Caa/Aaa						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49434958	49434958	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	20	179	0	ENST00000301067.7:c.6595delT	p.Tyr2199IlefsTer65	p.Y2199Ifs*65	ENST00000301067	NM_003482.3	2199	Tat/at						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220400	1220400	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			342	66	388	0	ENST00000326873.7:c.493G>C	p.Glu165Gln	p.E165Q	ENST00000326873	NM_000455.4	165	Gag/Cag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	71	409	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag						NEWRECORD																																																																									
REL	5966	MSKCC	GRCh37	2	61144017	61144017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			561	133	307	0	ENST00000295025.8:c.400G>A	p.Glu134Lys	p.E134K	ENST00000295025	NM_002908.2	134	Gaa/Aaa						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142274974	142274974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	121	250	0	ENST00000350721.4:c.2086G>T	p.Val696Phe	p.V696F	ENST00000350721	NM_001184.3	696	Gtc/Ttc						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66197704	66197704	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			601	56	308	0	ENST00000273854.3:c.2995C>T	p.Gln999Ter	p.Q999*	ENST00000273854	NM_004439.5	999	Cag/Tag						NEWRECORD																																																																									
HIST1H2BD	3017	MSKCC	GRCh37	6	26158626	26158626	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	27	109	0	ENST00000289316.2:c.229G>C	p.Glu77Gln	p.E77Q	ENST00000289316	NM_138720.2	77	Gag/Cag						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135782136	135782136	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			593	52	460	0	ENST00000298552.3:c.1420G>T	p.Glu474Ter	p.E474*	ENST00000298552	NM_001162426.1	474	Gaa/Taa						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43613863	43613863	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	33	284	0	ENST00000355710.3:c.2327T>C	p.Phe776Ser	p.F776S	ENST00000355710	NM_020975.4	776	tTc/tCc						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70432777	70432777	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			586	42	447	0	ENST00000373644.4:c.4799G>C	p.Arg1600Thr	p.R1600T	ENST00000373644	NM_030625.2	1600	aGa/aCa						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49050906	49050906	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			550	121	306	1	ENST00000267163.4:c.2590G>T	p.Glu864Ter	p.E864*	ENST00000267163	NM_000321.2	864	Gaa/Taa						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1206925	1206925	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			261	59	145	0	ENST00000326873.7:c.13G>C	p.Asp5His	p.D5H	ENST00000326873	NM_000455.4	5	Gac/Cac						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1206952	1206952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			287	70	182	0	ENST00000326873.7:c.40G>A	p.Glu14Lys	p.E14K	ENST00000326873	NM_000455.4	14	Gag/Aag						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207114	1207114	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	87	338	0	ENST00000326873.7:c.202G>C	p.Asp68His	p.D68H	ENST00000326873	NM_000455.4	68	Gac/Cac						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149500868	149500868	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	198	216	1	ENST00000261799.4:c.2362C>T	p.Arg788Ter	p.R788*	ENST00000261799	NM_002609.3	788	Cga/Tga						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061450	38061450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	174	201	0	ENST00000250448.2:c.539C>T	p.Thr180Ile	p.T180I	ENST00000250448	NM_004496.3	180	aCc/aTc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0004081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	110	253	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0004081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	108	213	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	122	176	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114710972	114710976	+	frameshift_variant	Frame_Shift_Del	DEL	AGACG	AGACG	-			P-0004081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	106	336	0	ENST00000543371.1:c.196_200del	p.Arg66AlafsTer29	p.R66Afs*29	ENST00000543371	NM_001198531.1	66	AGACGg/g						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002731-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			363	888	392	0	ENST00000269305.4:c.814G>C	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ctg						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29653080	29653080	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002731-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			188	485	273	0	ENST00000358273.4:c.5078A>G	p.His1693Arg	p.H1693R	ENST00000358273	NM_001042492.2	1693	cAt/cGt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600417	10600417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002731-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			403	663	366	0	ENST00000171111.5:c.1438G>T	p.Gly480Trp	p.G480W	ENST00000171111	NM_203500.1	480	Ggg/Tgg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1219412	1219422	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGCGTGCGC	GGTGCGTGCGC	-			P-0002731-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			199	299	202	0	ENST00000326873.7:c.464+2_464+12del		p.X155_splice	ENST00000326873	NM_000455.4	155							NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023208	27023208	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002731-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			191	73	124	0	ENST00000324856.7:c.314G>T	p.Gly105Val	p.G105V	ENST00000324856	NM_006015.4	105	gGg/gTg						NEWRECORD																																																																									
GSK3B	2932	MSKCC	GRCh37	3	119720987	119720987	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002731-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			545	209	396	0	ENST00000316626.5:c.188G>C	p.Gly63Ala	p.G63A	ENST00000316626		63	gGa/gCa						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150016322	150016322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002731-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			443	155	304	0	ENST00000253339.5:c.384C>A	p.Asn128Lys	p.N128K	ENST00000253339		128	aaC/aaA						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145738648	145738648	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767102398		P-0002731-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			715	255	142	0	ENST00000428558.2:c.2416G>A	p.Gly806Arg	p.G806R	ENST00000428558	NM_004260.3	806	Ggg/Agg						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21563201	21563201	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002731-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			463	188	296	0	ENST00000382592.4:c.718G>C	p.Glu240Gln	p.E240Q	ENST00000382592	NM_014572.2	240	Gag/Cag						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42058472	42058472	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002731-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			461	638	565	0	ENST00000219905.7:c.8193del	p.Asp2732ThrfsTer20	p.D2732Tfs*20	ENST00000219905	NM_001164273.1	2731	gTt/gt						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116411883	116411920	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCTTTCTCTCTGTTTTAAGATCTGGGCAGTGAATTAG	TTCTTTCTCTCTGTTTTAAGATCTGGGCAGTGAATTAG	-			P-0003840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	400	189	0	ENST00000397752.3:c.2888-17_2908del		p.X963_splice	ENST00000397752	NM_000245.2	963							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0003999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	57	173	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	178	278	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67593301	67593301	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	58	243	0	ENST00000274335.5:c.2047G>T	p.Glu683Ter	p.E683*	ENST00000274335		683	Gag/Tag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	94	138	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	93967988	93967988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	118	378	0	ENST00000369303.4:c.1939G>A	p.Val647Ile	p.V647I	ENST00000369303	NM_004440.3	647	Gtc/Atc						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42041668	42041668	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	193	432	1	ENST00000219905.7:c.5863G>T	p.Val1955Phe	p.V1955F	ENST00000219905	NM_001164273.1	1955	Gtt/Ttt						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114900910	114901013	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGACGGTGTCTTTCTCTGTTCTCCTCCCCACAGTCTAACAAAGTGCCAGTGGTGCAGCACCCTCACCATGTCCACCCCCTCACGCCTCTTATCACGTACAGCAA	TGACGGTGTCTTTCTCTGTTCTCCTCCCCACAGTCTAACAAAGTGCCAGTGGTGCAGCACCCTCACCATGTCCACCCCCTCACGCCTCTTATCACGTACAGCAA	-			P-0003999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	95	256	0	ENST00000543371.1:c.553-30_626del		p.X185_splice	ENST00000543371	NM_001198531.1	185							NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55955966	55955966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	517	231	0	ENST00000263923.4:c.3196C>T	p.Arg1066Cys	p.R1066C	ENST00000263923	NM_002253.2	1066	Cgc/Tgc						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143081519	143081519	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	851	216	0	ENST00000262992.4:c.1555G>T	p.Glu519Ter	p.E519*	ENST00000262992	NM_001101669.1	519	Gaa/Taa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151868429	151868429	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0004600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	222	214	0	ENST00000262189.6:c.9375-2A>C		p.X3125_splice	ENST00000262189	NM_170606.2	3125							NEWRECORD																																																																									
XRCC2	7516	MSKCC	GRCh37	7	152345855	152345855	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	392	356	0	ENST00000359321.1:c.715A>T	p.Met239Leu	p.M239L	ENST00000359321	NM_005431.1	239	Atg/Ttg						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56492311	56492311	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	314	270	0	ENST00000267101.3:c.2644A>T	p.Ser882Cys	p.S882C	ENST00000267101	NM_001982.3	882	Agt/Tgt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0001170-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			223	254	338	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0001170-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			142	112	354	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212589848	212589848	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001170-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	121	268	0	ENST00000342788.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000342788	NM_005235.2	232	Cga/Tga						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001170-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	42	377	0	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49442974	49442974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001170-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	45	328	0	ENST00000301067.7:c.3934C>T	p.Arg1312Cys	p.R1312C	ENST00000301067	NM_003482.3	1312	Cgc/Tgc						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12016603	12016603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001170-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			264	183	404	0	ENST00000353533.5:c.739G>T	p.Asp247Tyr	p.D247Y	ENST00000353533	NM_003010.3	247	Gac/Tac						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47040639	47040639	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001170-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			121	197	236	0	ENST00000329236.7:c.1040G>A	p.Trp347Ter	p.W347*	ENST00000329236	NM_001204466.1	347	tGg/tAg						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27105621	27105621	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001170-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			369	109	447	0	ENST00000324856.7:c.5232del	p.Leu1745TrpfsTer25	p.L1745Wfs*25	ENST00000324856	NM_006015.4	1744	ctA/ct						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0002060-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	133	299	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8486334	8486334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002060-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			219	20	134	0	ENST00000356435.5:c.2483G>A	p.Arg828Gln	p.R828Q	ENST00000356435		828	cGg/cAg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1219336	1219336	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002060-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			528	120	336	0	ENST00000326873.7:c.388G>T	p.Glu130Ter	p.E130*	ENST00000326873	NM_000455.4	130	Gag/Tag						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602404	10602404	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002060-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	102	384	0	ENST00000171111.5:c.1174G>C	p.Ala392Pro	p.A392P	ENST00000171111	NM_203500.1	392	Gcc/Ccc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000301-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			611	91	402	0	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0000301-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			807	40	304	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0004392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	156	330	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574035	7574035	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0004392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	121	650	0	ENST00000269305.4:c.994-2A>G		p.X332_splice	ENST00000269305	NM_001126112.2	332							NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151878464	151878464	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	73	334	0	ENST00000262189.6:c.6481C>T	p.Gln2161Ter	p.Q2161*	ENST00000262189	NM_170606.2	2161	Caa/Taa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	198	230	1	ENST00000269305.4:c.379T>C	p.Ser127Pro	p.S127P	ENST00000269305	NM_001126112.2	127	Tcc/Ccc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27105764	27105764	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	34	323	0	ENST00000324856.7:c.5375G>T	p.Gly1792Val	p.G1792V	ENST00000324856	NM_006015.4	1792	gGc/gTc						NEWRECORD																																																																									
CASP8	841	MSKCC	GRCh37	2	202141632	202141632	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	396	394	0	ENST00000358485.4:c.920G>T	p.Arg307Leu	p.R307L	ENST00000358485	NM_001080125.1	307	cGg/cTg						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86642511	86642511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	217	236	0	ENST00000274376.6:c.1072A>G	p.Lys358Glu	p.K358E	ENST00000274376	NM_002890.2	358	Aaa/Gaa						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2969699	2969699	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	46	338	0	ENST00000396946.4:c.1580A>G	p.His527Arg	p.H527R	ENST00000396946	NM_032415.4	527	cAc/cGc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55223522	55223522	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	278	593	0	ENST00000275493.2:c.890-1G>T		p.X297_splice	ENST00000275493	NM_005228.3	297							NEWRECORD																																																																									
FGF3	2248	MSKCC	GRCh37	11	69625094	69625094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	55	221	0	ENST00000334134.2:c.699G>T	p.Gln233His	p.Q233H	ENST00000334134	NM_005247.2	233	caG/caT						NEWRECORD																																																																									
H3F3C	440093	MSKCC	GRCh37	12	31944915	31944915	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	126	302	0	ENST00000340398.3:c.186C>G	p.Ile62Met	p.I62M	ENST00000340398	NM_001013699.2	62	atC/atG						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46123836	46123836	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	65	262	1	ENST00000334344.6:c.102T>A	p.Phe34Leu	p.F34L	ENST00000334344	NM_152641.2	34	ttT/ttA						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2222176	2222176	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	294	411	0	ENST00000398665.3:c.3008C>G	p.Ala1003Gly	p.A1003G	ENST00000398665	NM_032482.2	1003	gCc/gGc						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17955199	17955199	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	139	303	0	ENST00000458235.1:c.28C>A	p.Leu10Met	p.L10M	ENST00000458235	NM_000215.3	10	Ctg/Atg						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9624771	9624771	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	40	191	0	ENST00000353224.5:c.204+2T>C		p.X68_splice	ENST00000353224	NM_177990.2	68							NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215593477	215593478	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	334	315	0	ENST00000260947.4:c.2256_2257delinsTT	p.Gln752_Gly753delinsHisCys	p.Q752_G753delinsHC	ENST00000260947	NM_000465.2	752	caGGgc/caTTgc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591857	48591857	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002898-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	41	545	0	ENST00000342988.3:c.1020G>C	p.Lys340Asn	p.K340N	ENST00000342988	NM_005359.5	340	aaG/aaC						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0002898-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			411	66	488	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44969468	44969471	+	frameshift_variant	Frame_Shift_Del	DEL	ATGC	ATGC	-			P-0002898-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			183	52	279	0	ENST00000377967.4:c.4151_4154del	p.Met1384LysfsTer8	p.M1384Kfs*8	ENST00000377967	NM_021140.2	1384	ATGCaa/aa						NEWRECORD																																																																									
REL	5966	MSKCC	GRCh37	2	61149188	61149188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001618-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			385	100	448	0	ENST00000295025.8:c.1378G>A	p.Ala460Thr	p.A460T	ENST00000295025	NM_002908.2	460	Gct/Act						NEWRECORD																																																																									
ERCC3	2071	MSKCC	GRCh37	2	128044348	128044348	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001618-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			280	62	500	1	ENST00000285398.2:c.1273C>T	p.Arg425Ter	p.R425*	ENST00000285398	NM_000122.1	425	Cga/Tga						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99434563	99434563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001618-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			299	97	293	0	ENST00000268035.6:c.650G>A	p.Ser217Asn	p.S217N	ENST00000268035	NM_000875.3	217	aGc/aAc						NEWRECORD																																																																									
TRAF7	84231	MSKCC	GRCh37	16	2223958	2223958	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001618-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	36	564	0	ENST00000326181.6:c.1172C>G	p.Thr391Ser	p.T391S	ENST00000326181	NM_032271.2	391	aCc/aGc						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76814282	76814282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001618-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			463	68	573	0	ENST00000373344.5:c.6362C>A	p.Ser2121Tyr	p.S2121Y	ENST00000373344	NM_000489.3	2121	tCt/tAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577596	7577596	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001618-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	153	353	0	ENST00000269305.4:c.685del	p.Cys229ValfsTer18	p.C229Vfs*18	ENST00000269305	NM_001126112.2	229	Tgt/gt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000762-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	108	405	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0000762-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			293	162	480	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0000762-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	185	543	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224							NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173510	112173510	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000762-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			280	116	311	0	ENST00000257430.4:c.2220del	p.Asn741IlefsTer20	p.N741Ifs*20	ENST00000257430	NM_000038.5	740	gCc/gc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002616-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			668	504	458	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0003787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	25	113	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	31	168	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99155369	99155369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	41	225	0	ENST00000074304.5:c.595G>A	p.Asp199Asn	p.D199N	ENST00000074304	NM_001134224.1	199	Gat/Aat						NEWRECORD																																																																									
ALOX12B	242	MSKCC	GRCh37	17	7982743	7982743	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	33	208	0	ENST00000319144.4:c.1042G>C	p.Glu348Gln	p.E348Q	ENST00000319144	NM_001139.2	348	Gag/Cag						NEWRECORD																																																																									
PIK3R2	5296	MSKCC	GRCh37	19	18266702	18266702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	27	129	0	ENST00000222254.8:c.13G>A	p.Glu5Lys	p.E5K	ENST00000222254	NM_005027.3	5	Gag/Aag						NEWRECORD																																																																									
NEGR1	257194	MSKCC	GRCh37	1	72748169	72748169	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	68	216	0	ENST00000357731.5:c.9G>C	p.Met3Ile	p.M3I	ENST00000357731	NM_173808.2	3	atG/atC						NEWRECORD																																																																									
MYC	4609	MSKCC	GRCh37	8	128750722	128750722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	43	213	0	ENST00000377970.2:c.259C>T	p.Pro87Ser	p.P87S	ENST00000377970	NM_002467.4	87	Ccc/Tcc						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115112412	115112412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	29	108	0	ENST00000257566.3:c.1328C>T	p.Ser443Leu	p.S443L	ENST00000257566	NM_016569.3	443	tCg/tTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577571	7577571	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	75	114	0	ENST00000269305.4:c.710T>A	p.Met237Lys	p.M237K	ENST00000269305	NM_001126112.2	237	aTg/aAg						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41244882	41244882	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	54	187	0	ENST00000357654.3:c.2666C>G	p.Ser889Cys	p.S889C	ENST00000357654	NM_007294.3	889	tCt/tGt						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2210418	2210418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	19	110	0	ENST00000398665.3:c.1025G>A	p.Arg342Gln	p.R342Q	ENST00000398665	NM_032482.2	342	cGg/cAg						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42798191	42798191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	28	157	0	ENST00000575354.2:c.4145C>T	p.Ser1382Leu	p.S1382L	ENST00000575354	NM_015125.3	1382	tCa/tTa						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18699331	18699331	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	82	278	0	ENST00000266497.5:c.3432A>T	p.Gln1144His	p.Q1144H	ENST00000266497		1144	caA/caT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0003611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	92	293	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc						NEWRECORD																																																																									
SOX2	6657	MSKCC	GRCh37	3	181430533	181430533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	85	260	0	ENST00000325404.1:c.385G>A	p.Gly129Ser	p.G129S	ENST00000325404	NM_003106.3	129	Ggc/Agc						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30671830	30671830	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	81	341	0	ENST00000376406.3:c.5130T>G	p.Ile1710Met	p.I1710M	ENST00000376406	NM_014641.2	1710	atT/atG						NEWRECORD																																																																									
MYOD1	4654	MSKCC	GRCh37	11	17741459	17741459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	107	368	0	ENST00000250003.3:c.130G>A	p.Glu44Lys	p.E44K	ENST00000250003	NM_002478.4	44	Gaa/Aaa						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108098419	108098419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	80	199	0	ENST00000278616.4:c.68G>A	p.Arg23Gln	p.R23Q	ENST00000278616	NM_000051.3	23	cGa/cAa						NEWRECORD																																																																									
RAD51C	5889	MSKCC	GRCh37	17	56798140	56798140	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	98	405	0	ENST00000337432.4:c.871G>T	p.Asp291Tyr	p.D291Y	ENST00000337432	NM_058216.2	291	Gat/Tat						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9523285	9523285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	105	394	0	ENST00000353224.5:c.1952C>T	p.Ala651Val	p.A651V	ENST00000353224	NM_177990.2	651	gCg/gTg						NEWRECORD																																																																									
TMPRSS2	7113	MSKCC	GRCh37	21	42852482	42852482	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	124	361	0	ENST00000398585.3:c.604A>T	p.Arg202Trp	p.R202W	ENST00000398585	NM_001135099.1	202	Agg/Tgg						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974772	+	frameshift_variant	Frame_Shift_Del	DEL	CGGC	CGGC	-			P-0003611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	55	170	0	ENST00000304494.5:c.55_58del	p.Ala19ArgfsTer6	p.A19Rfs*6	ENST00000304494	NM_000077.4	19	GCCGcg/cg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380276	+	missense_variant	Missense_Mutation	DNP	TT	TT	GC			P-0003611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	104	323	0	ENST00000256078.4:c.182_183delAAinsGC	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAA/cGC						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0000214-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			684	458	547	3	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48954198	48954198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000214-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			540	384	422	1	ENST00000267163.4:c.1399C>T	p.Arg467Ter	p.R467*	ENST00000267163	NM_000321.2	467	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0002053-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	145	401	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128851510	128851510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002053-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			902	112	504	0	ENST00000249373.3:c.1835C>T	p.Ala612Val	p.A612V	ENST00000249373	NM_005631.4	612	gCt/gTt						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91352420	91352420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002053-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			838	115	412	0	ENST00000355112.3:c.3805G>A	p.Asp1269Asn	p.D1269N	ENST00000355112	NM_000057.2	1269	Gac/Aac						NEWRECORD																																																																									
EGFL7	51162	MSKCC	GRCh37	9	139563042	139563063	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTGTCTCCGAGTCGTTCGTG	CCCTGTCTCCGAGTCGTTCGTG	-			P-0002053-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			778	86	395	0	ENST00000308874.7:c.115_136del	p.Pro39SerfsTer151	p.P39Sfs*151	ENST00000308874		38	gaCCCTGTCTCCGAGTCGTTCGTG/ga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0001662-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	17	276	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66931247	66931247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001662-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	40	314	0	ENST00000374690.3:c.1889G>A	p.Arg630Gln	p.R630Q	ENST00000374690	NM_000044.3	630	cGg/cAg						NEWRECORD																																																																									
PRDM1	639	MSKCC	GRCh37	6	106552891	106552891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000158-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1158	244	902	0	ENST00000369096.4:c.856C>T	p.Arg286Cys	p.R286C	ENST00000369096	NM_001198.3	286	Cgt/Tgt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49436912	49436912	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000158-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			810	54	465	0	ENST00000301067.7:c.5591delG	p.Gly1864AlafsTer12	p.G1864Afs*12	ENST00000301067	NM_003482.3	1864	gGc/gc						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47164211	47164211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000827-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			361	22	290	1	ENST00000409792.3:c.1915G>A	p.Glu639Lys	p.E639K	ENST00000409792	NM_014159.6	639	Gaa/Aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577064	7577064	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0000827-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			658	27	371	0	ENST00000269305.4:c.874A>T	p.Lys292Ter	p.K292*	ENST00000269305	NM_001126112.2	292	Aaa/Taa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0000827-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			477	22	459	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45374956	45374956	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000827-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			404	25	355	0	ENST00000262160.6:c.887C>A	p.Ser296Ter	p.S296*	ENST00000262160	NM_005901.5	296	tCa/tAa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			593	309	500	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0000754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			701	264	521	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56160745	56160745	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			583	190	424	0	ENST00000399503.3:c.1019T>G	p.Val340Gly	p.V340G	ENST00000399503	NM_005921.1	340	gTg/gGg						NEWRECORD																																																																									
SDHD	6392	MSKCC	GRCh37	11	111957672	111957672	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			794	259	436	0	ENST00000375549.3:c.41T>G	p.Leu14Arg	p.L14R	ENST00000375549	NM_003002.3	14	cTa/cGa						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37880257	37880257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			941	362	493	0	ENST00000269571.5:c.2301C>G	p.Ile767Met	p.I767M	ENST00000269571		767	atC/atG						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5207956	5207956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			746	292	539	1	ENST00000357368.4:c.5755C>T	p.Arg1919Trp	p.R1919W	ENST00000357368	NM_002850.3	1919	Cgg/Tgg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175569	112175587	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTGGACAAACCATGCCA	CCCTGGACAAACCATGCCA	-			P-0000754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			472	320	461	0	ENST00000257430.4:c.4280_4298del	p.Pro1427GlnfsTer40	p.P1427Qfs*40	ENST00000257430	NM_000038.5	1426	agCCCTGGACAAACCATGCCA/ag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0000583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			968	810	406	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0000583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			824	765	309	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			615	62	316	0	ENST00000269305.4:c.517G>C	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ctg						NEWRECORD																																																																									
CDC73	79577	MSKCC	GRCh37	1	193099329	193099329	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1045	199	354	0	ENST00000367435.3:c.263G>C	p.Arg88Thr	p.R88T	ENST00000367435	NM_024529.4	88	aGa/aCa						NEWRECORD																																																																									
HIST1H3B	8358	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			587	78	224	0	ENST00000244661.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000244661	NM_003537.3	106	Gag/Cag						NEWRECORD																																																																									
FANCC	2176	MSKCC	GRCh37	9	97888824	97888824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1188	125	511	0	ENST00000289081.3:c.883G>T	p.Asp295Tyr	p.D295Y	ENST00000289081	NM_000136.2	295	Gat/Tat						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108099990	108099990	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			477	36	160	0	ENST00000278616.4:c.271C>T	p.Gln91Ter	p.Q91*	ENST00000278616	NM_000051.3	91	Cag/Tag						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108190715	108190715	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			919	51	363	0	ENST00000278616.4:c.6382T>G	p.Leu2128Val	p.L2128V	ENST00000278616	NM_000051.3	2128	Ttg/Gtg						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	347782	347782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1428	103	622	0	ENST00000262320.3:c.1724C>A	p.Ser575Tyr	p.S575Y	ENST00000262320	NM_003502.3	575	tCc/tAc						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3789649	3789649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			2002	139	566	0	ENST00000262367.5:c.4210G>A	p.Gly1404Ser	p.G1404S	ENST00000262367	NM_004380.2	1404	Ggc/Agc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	98	162	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0003211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	230	308	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0003211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	256	332	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0003211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	194	275	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131926976	131926976	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	178	338	0	ENST00000265335.6:c.1513A>G	p.Ile505Val	p.I505V	ENST00000265335		505	Ata/Gta						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72831068	72831068	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	361	403	1	ENST00000268489.5:c.5513A>C	p.Gln1838Pro	p.Q1838P	ENST00000268489	NM_006885.3	1838	cAg/cCg						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31022592	31022592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	343	288	0	ENST00000375687.4:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000375687	NM_015338.5	693	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579841	7579841	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0003211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	381	342	0	ENST00000269305.4:c.72del	p.Lys24AsnfsTer20	p.K24Nfs*20	ENST00000269305	NM_001126112.2	24	aaA/aa						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212812165	212812165	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000541-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			549	133	683	0	ENST00000342788.4:c.411G>C	p.Lys137Asn	p.K137N	ENST00000342788	NM_005235.2	137	aaG/aaC						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8486143	8486143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000541-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	161	698	0	ENST00000356435.5:c.2674G>A	p.Val892Ile	p.V892I	ENST00000356435		892	Gtc/Atc						NEWRECORD																																																																									
NKX2-1	7080	MSKCC	GRCh37	14	36987002	36987002	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000541-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			182	25	499	0	ENST00000354822.5:c.687C>G	p.His229Gln	p.H229Q	ENST00000354822	NM_001079668.2	229	caC/caG						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140500237	140500237	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000329-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			575	250	316	0	ENST00000288602.6:c.905A>G	p.Gln302Arg	p.Q302R	ENST00000288602	NM_004333.4	302	cAg/cGg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108160489	108160489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000329-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			222	600	614	0	ENST00000278616.4:c.4397G>A	p.Arg1466Gln	p.R1466Q	ENST00000278616	NM_000051.3	1466	cGa/cAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs764146326		P-0000329-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	977	659	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40713427	40713427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000329-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	532	403	0	ENST00000373198.4:c.4088G>T	p.Arg1363Leu	p.R1363L	ENST00000373198	NM_133170.3	1363	cGg/cTg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001883-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			410	177	430	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66242715	66242715	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0001883-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	59	418	0	ENST00000273854.3:c.1856+1G>C		p.X619_splice	ENST00000273854	NM_004439.5	619							NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145741178	145741178	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001883-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	48	495	0	ENST00000428558.2:c.1228G>C	p.Asp410His	p.D410H	ENST00000428558	NM_004260.3	410	Gat/Cat						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139407524	139407524	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001883-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			241	36	409	0	ENST00000277541.6:c.2416T>C	p.Cys806Arg	p.C806R	ENST00000277541	NM_017617.3	806	Tgt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577027	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCTCCCTG	GTGCTCCCTG	-			P-0001883-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	127	500	1	ENST00000269305.4:c.902_911del	p.Pro301LeufsTer41	p.P301Lfs*41	ENST00000269305	NM_001126112.2	301	cCAGGGAGCACt/ct						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0002951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			427	272	643	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	59	401	0	ENST00000257430.4:c.3944C>A	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tAa						NEWRECORD																																																																									
FUBP1	8880	MSKCC	GRCh37	1	78426167	78426167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	57	288	0	ENST00000370768.2:c.1358C>T	p.Pro453Leu	p.P453L	ENST00000370768	NM_003902.3	453	cCt/cTt						NEWRECORD																																																																									
RFWD2	64326	MSKCC	GRCh37	1	175996783	175996783	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			685	130	605	0	ENST00000367669.3:c.1654A>G	p.Ile552Val	p.I552V	ENST00000367669	NM_022457.5	552	Att/Gtt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0002951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			312	116	326	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81332070	81332070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			407	26	422	0	ENST00000222390.5:c.2014G>A	p.Asp672Asn	p.D672N	ENST00000222390	NM_000601.4	672	Gat/Aat						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0003591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	33	382	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89480304	89480304	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	39	369	0	ENST00000336596.2:c.2141A>G	p.His714Arg	p.H714R	ENST00000336596	NM_005233.5	714	cAc/cGc						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89350407	89350407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	46	902	0	ENST00000301030.4:c.2543C>T	p.Ser848Leu	p.S848L	ENST00000301030	NM_001256183.1	848	tCa/tTa						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89351394	89351394	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	60	737	0	ENST00000301030.4:c.1556C>G	p.Ser519Cys	p.S519C	ENST00000301030	NM_001256183.1	519	tCt/tGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0001670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	223	538	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0001670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			800	181	472	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0001670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			533	88	339	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0001670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	232	368	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000183-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			857	391	424	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0000183-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			920	227	489	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56168491	56168492	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0000183-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1076	237	445	0	ENST00000399503.3:c.1450_1451delGA	p.Glu484ThrfsTer8	p.E484Tfs*8	ENST00000399503	NM_005921.1	483	AGa/a						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720837	89720837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000183-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			476	47	224	0	ENST00000371953.3:c.990delA	p.Asp331ThrfsTer13	p.D331Tfs*13	ENST00000371953	NM_000314.4	330	Aaa/aa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001316-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	202	405	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0001316-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			144	76	229	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185190938	185190938	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001316-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			558	177	655	0	ENST00000265026.3:c.1819A>C	p.Lys607Gln	p.K607Q	ENST00000265026	NM_004721.4	607	Aaa/Caa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112170647	112170647	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0001316-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	111	323	0	ENST00000257430.4:c.1744-1G>A		p.X582_splice	ENST00000257430	NM_000038.5	582							NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115114174	115114174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001316-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	159	485	0	ENST00000257566.3:c.1043G>A	p.Cys348Tyr	p.C348Y	ENST00000257566	NM_016569.3	348	tGc/tAc						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11217299	11217310	+	inframe_deletion	In_Frame_Del	DEL	AGGGCATCCTCC	AGGGCATCCTCC	-			P-0001316-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	81	450	0	ENST00000361445.4:c.4368_4379del	p.Trp1456_Leu1460delinsCys	p.W1456_L1460delinsC	ENST00000361445	NM_004958.3	1456	tgGGAGGATGCCCTt/tgt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112176027	112176027	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001316-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			397	92	245	0	ENST00000257430.4:c.4737del	p.Ile1580PhefsTer70	p.I1580Ffs*70	ENST00000257430	NM_000038.5	1579	aTt/at						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0000843-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			120	151	163	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0000843-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	380	383	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17955165	17955165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000843-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			270	380	173	0	ENST00000458235.1:c.62C>T	p.Thr21Met	p.T21M	ENST00000458235	NM_000215.3	21	aCg/aTg						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55565852	55565852	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000239-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			924	65	279	0	ENST00000288135.5:c.676G>T	p.Gly226Trp	p.G226W	ENST00000288135	NM_000222.2	226	Ggg/Tgg						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32910914	32910914	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000239-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			552	33	164	0	ENST00000380152.3:c.2422G>T	p.Glu808Ter	p.E808*	ENST00000380152		808	Gaa/Taa						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47039816	47039816	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0000239-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			571	77	245	0	ENST00000329236.7:c.927-2A>T		p.X309_splice	ENST00000329236	NM_001204466.1	309							NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53245033	53245033	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000239-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1043	56	387	0	ENST00000375401.3:c.907G>C	p.Glu303Gln	p.E303Q	ENST00000375401	NM_004187.3	303	Gaa/Caa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	9	133	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
FGFR2	2263	MSKCC	GRCh37	10	123279674	123279674	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	14	88	0	ENST00000358487.5:c.758C>G	p.Pro253Arg	p.P253R	ENST00000358487	NM_000141.4	253	cCt/cGt						NEWRECORD																																																																									
IKBKE	9641	MSKCC	GRCh37	1	206649669	206649669	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	27	120	0	ENST00000367120.3:c.504G>C	p.Glu168Asp	p.E168D	ENST00000367120	NM_014002.3	168	gaG/gaC						NEWRECORD																																																																									
HIST3H3	8290	MSKCC	GRCh37	1	228612711	228612711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1113	66	582	0	ENST00000366696.1:c.316G>A	p.Glu106Lys	p.E106K	ENST00000366696	NM_003493.2	106	Gag/Aag						NEWRECORD																																																																									
INHA	3623	MSKCC	GRCh37	2	220437173	220437173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	80	496	1	ENST00000243786.2:c.77G>A	p.Arg26Gln	p.R26Q	ENST00000243786	NM_002191.3	26	cGg/cAg						NEWRECORD																																																																									
PDCD1	5133	MSKCC	GRCh37	2	242793342	242793342	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	50	249	0	ENST00000334409.5:c.735G>C	p.Gln245His	p.Q245H	ENST00000334409	NM_005018.2	245	caG/caC						NEWRECORD																																																																									
FOXP1	27086	MSKCC	GRCh37	3	71064794	71064794	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	48	232	0	ENST00000318789.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000318789	NM_032682.5	294	Gag/Tag						NEWRECORD																																																																									
GATA2	2624	MSKCC	GRCh37	3	128204726	128204726	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	54	362	0	ENST00000341105.2:c.715C>T	p.Gln239Ter	p.Q239*	ENST00000341105	NM_032638.4	239	Cag/Tag						NEWRECORD																																																																									
GATA2	2624	MSKCC	GRCh37	3	128204866	128204866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	43	312	0	ENST00000341105.2:c.575C>T	p.Ser192Phe	p.S192F	ENST00000341105	NM_032638.4	192	tCt/tTt						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151845954	151845954	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	51	313	0	ENST00000262189.6:c.13058G>C	p.Arg4353Thr	p.R4353T	ENST00000262189	NM_170606.2	4353	aGa/aCa						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87325550	87325550	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	92	264	0	ENST00000277120.3:c.429-2A>G		p.X143_splice	ENST00000277120		143							NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18443917	18443917	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	50	249	0	ENST00000266497.5:c.890C>A	p.Ser297Ter	p.S297*	ENST00000266497		297	tCa/tAa						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49434666	49434666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	30	227	0	ENST00000301067.7:c.6887C>T	p.Ser2296Phe	p.S2296F	ENST00000301067	NM_003482.3	2296	tCt/tTt						NEWRECORD																																																																									
RAD51	5888	MSKCC	GRCh37	15	40993322	40993322	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	69	253	0	ENST00000267868.3:c.148G>C	p.Glu50Gln	p.E50Q	ENST00000267868	NM_002875.4	50	Gag/Cag						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3786710	3786710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	71	443	0	ENST00000262367.5:c.4501G>A	p.Glu1501Lys	p.E1501K	ENST00000262367	NM_004380.2	1501	Gag/Aag						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3790482	3790482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	48	310	0	ENST00000262367.5:c.4051C>G	p.His1351Asp	p.H1351D	ENST00000262367	NM_004380.2	1351	Cac/Gac						NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14038623	14038623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	48	219	0	ENST00000311895.7:c.1948G>C	p.Asp650His	p.D650H	ENST00000311895	NM_005236.2	650	Gat/Cat						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68844229	68844229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	38	256	0	ENST00000261769.5:c.817G>A	p.Glu273Lys	p.E273K	ENST00000261769	NM_004360.3	273	Gaa/Aaa						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15975531	15975531	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	29	292	0	ENST00000268712.3:c.3823C>T	p.Arg1275Ter	p.R1275*	ENST00000268712	NM_006311.3	1275	Cga/Tga						NEWRECORD																																																																									
FLCN	201163	MSKCC	GRCh37	17	17131361	17131361	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	65	364	0	ENST00000285071.4:c.91C>G	p.Gln31Glu	p.Q31E	ENST00000285071	NM_144997.5	31	Caa/Gaa						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41245606	41245606	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	59	289	0	ENST00000357654.3:c.1942G>T	p.Glu648Ter	p.E648*	ENST00000357654	NM_007294.3	648	Gaa/Taa						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45395632	45395632	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	42	260	0	ENST00000262160.6:c.502C>T	p.Gln168Ter	p.Q168*	ENST00000262160	NM_005901.5	168	Cag/Tag						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9561441	9561441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	35	194	0	ENST00000353224.5:c.341G>A	p.Ser114Asn	p.S114N	ENST00000353224	NM_177990.2	114	aGc/aAc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41101007	41101007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	40	228	0	ENST00000373198.4:c.1349G>A	p.Arg450Gln	p.R450Q	ENST00000373198	NM_133170.3	450	cGa/cAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579838	7579844	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CAGTTTC	CAGTTTC	-			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	81	286	0	ENST00000269305.4:c.69_74+1del		p.X23_splice	ENST00000269305	NM_001126112.2	23							NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14031702	14031702	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	41	220	0	ENST00000311895.7:c.1891del	p.Glu631LysfsTer4	p.E631Kfs*4	ENST00000311895	NM_005236.2	631	Gaa/aa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27099479	27099479	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0004153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	161	213	0	ENST00000324856.7:c.3715+1G>A		p.X1239_splice	ENST00000324856	NM_006015.4	1239							NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8636823	8636823	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	239	260	0	ENST00000356435.5:c.86C>A	p.Thr29Lys	p.T29K	ENST00000356435		29	aCa/aAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579358	7579364	+	frameshift_variant	Frame_Shift_Del	DEL	CGGAAAC	CGGAAAC	-			P-0004153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	171	238	0	ENST00000269305.4:c.323_329del	p.Gly108ValfsTer13	p.G108Vfs*13	ENST00000269305	NM_001126112.2	108	gGTTTCCGt/gt						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67591077	67591077	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	216	212	0	ENST00000274335.5:c.1670del	p.Arg557GlnfsTer7	p.R557Qfs*7	ENST00000274335		557	cGa/ca						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44935948	44935955	+	frameshift_variant	Frame_Shift_Del	DEL	AGGTAAAA	AGGTAAAA	-			P-0004153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	274	461	0	ENST00000377967.4:c.2710_2717del	p.Gly904TrpfsTer4	p.G904Wfs*4	ENST00000377967	NM_021140.2	903	ctAGGTAAAAat/ctat						NEWRECORD																																																																									
MPL	4352	MSKCC	GRCh37	1	43818397	43818397	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	80	399	0	ENST00000372470.3:c.1862T>C	p.Ile621Thr	p.I621T	ENST00000372470	NM_005373.2	621	aTt/aCt						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149460381	149460381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	42	377	1	ENST00000286301.3:c.256G>A	p.Glu86Lys	p.E86K	ENST00000286301	NM_005211.3	86	Gag/Aag						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68842326	68842326	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0004668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	77	436	0	ENST00000261769.5:c.388-1G>A		p.X130_splice	ENST00000261769	NM_004360.3	130							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002730-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			707	252	673	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002730-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	193	491	0	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8100720	8100720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002730-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			581	142	599	0	ENST00000346208.3:c.694G>A	p.Gly232Arg	p.G232R	ENST00000346208		232	Gga/Aga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164582	112164582	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002730-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	260	355	0	ENST00000257430.4:c.1657del	p.Trp553GlyfsTer5	p.W553Gfs*5	ENST00000257430	NM_000038.5	552	tcT/tc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001218-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			669	35	287	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1282	128	568	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81355283	81355283	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1145	197	516	0	ENST00000222390.5:c.1091G>T	p.Trp364Leu	p.W364L	ENST00000222390	NM_000601.4	364	tGg/tTg						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508872	106508872	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			736	89	379	0	ENST00000359195.3:c.866A>G	p.Asn289Ser	p.N289S	ENST00000359195	NM_002649.2	289	aAc/aGc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8319910	8319910	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1044	183	604	0	ENST00000356435.5:c.5591T>A	p.Met1864Lys	p.M1864K	ENST00000356435		1864	aTg/aAg						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8100285	8100285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			524	68	414	0	ENST00000346208.3:c.259C>A	p.Pro87Thr	p.P87T	ENST00000346208		87	Ccg/Acg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108186830	108186830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			870	112	455	1	ENST00000278616.4:c.6188G>T	p.Gly2063Val	p.G2063V	ENST00000278616	NM_000051.3	2063	gGa/gTa						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3786802	3786802	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			515	50	430	0	ENST00000262367.5:c.4409A>T	p.His1470Leu	p.H1470L	ENST00000262367	NM_004380.2	1470	cAc/cTc						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12016651	12016651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			738	91	410	0	ENST00000353533.5:c.787G>T	p.Asp263Tyr	p.D263Y	ENST00000353533	NM_003010.3	263	Gat/Tat						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15291941	15291941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			272	21	304	0	ENST00000263388.2:c.2825del	p.Gly942AlafsTer2	p.G942Afs*2	ENST00000263388	NM_000435.2	942	gGc/gc						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0002070-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			793	348	336	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt						NEWRECORD																																																																									
RHOA	387	MSKCC	GRCh37	3	49405951	49405951	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002070-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			830	141	358	0	ENST00000418115.1:c.187C>A	p.Gln63Lys	p.Q63K	ENST00000418115	NM_001664.2	63	Cag/Aag						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108225543	108225543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002070-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			540	100	339	1	ENST00000278616.4:c.8792G>A	p.Cys2931Tyr	p.C2931Y	ENST00000278616	NM_000051.3	2931	tGt/tAt						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67457342	67457342	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs138550573		P-0002070-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			511	179	345	2	ENST00000327367.4:c.316A>G	p.Met106Val	p.M106V	ENST00000327367	NM_005902.3	106	Atg/Gtg						NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14041653	14041653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002070-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			748	126	390	0	ENST00000311895.7:c.2200G>A	p.Gly734Ser	p.G734S	ENST00000311895	NM_005236.2	734	Ggc/Agc						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67645415	67645415	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002070-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	184	272	0	ENST00000264010.4:c.680A>G	p.Asp227Gly	p.D227G	ENST00000264010	NM_006565.3	227	gAt/gGt						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67645504	67645504	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002070-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	108	156	0	ENST00000264010.4:c.769A>G	p.Ile257Val	p.I257V	ENST00000264010	NM_006565.3	257	Att/Gtt						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41306741	41306741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002070-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			602	73	286	0	ENST00000373198.4:c.918G>T	p.Trp306Cys	p.W306C	ENST00000373198	NM_133170.3	306	tgG/tgT						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0002070-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			987	319	342	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	216	130	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56178253	56178253	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			784	198	401	1	ENST00000399503.3:c.3226C>G	p.Pro1076Ala	p.P1076A	ENST00000399503	NM_005921.1	1076	Ccc/Gcc						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117631302	117631302	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138376257		P-0000469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			553	219	608	0	ENST00000368508.3:c.6376C>T	p.Arg2126Trp	p.R2126W	ENST00000368508	NM_002944.2	2126	Cgg/Tgg						NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	162206911	162206911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			355	38	260	0	ENST00000366898.1:c.764C>T	p.Ser255Phe	p.S255F	ENST00000366898	NM_004562.2	255	tCc/tTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0000469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			29	105	294	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa						NEWRECORD																																																																									
AURKA	6790	MSKCC	GRCh37	20	54948558	54948558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			648	428	509	0	ENST00000312783.6:c.760C>T	p.His254Tyr	p.H254Y	ENST00000312783	NM_198436.1	254	Cat/Tat						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23632691	23632691	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	219	371	0	ENST00000261584.4:c.3105delT	p.Ile1035MetfsTer6	p.I1035Mfs*6	ENST00000261584	NM_024675.3	1035	atT/at						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157099872	157099873	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0000469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			212	276	320	0	ENST00000346085.5:c.809_810delCCinsTA	p.Ser270Leu	p.S270L	ENST00000346085	NM_020732.3	270	tCC/tTA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0003157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	57	235	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0003157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	73	167	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47058708	47058708	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	48	247	0	ENST00000409792.3:c.7570T>C	p.Cys2524Arg	p.C2524R	ENST00000409792	NM_014159.6	2524	Tgt/Cgt						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47058716	47058716	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	45	225	0	ENST00000409792.3:c.7562T>C	p.Leu2521Pro	p.L2521P	ENST00000409792	NM_014159.6	2521	cTg/cCg						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47142966	47142966	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	57	332	0	ENST00000409792.3:c.4997A>G	p.Tyr1666Cys	p.Y1666C	ENST00000409792	NM_014159.6	1666	tAt/tGt						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42042305	42042306	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0003157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1065	116	517	0	ENST00000219905.7:c.6500_6501del	p.Leu2167ArgfsTer27	p.L2167Rfs*27	ENST00000219905	NM_001164273.1	2167	cTG/c						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152382185	152382185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001483-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			248	69	217	0	ENST00000206249.3:c.1295C>T	p.Ser432Leu	p.S432L	ENST00000206249	NM_000125.3	432	tCa/tTa						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55130030	55130030	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001483-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	41	412	0	ENST00000257290.5:c.564C>G	p.Ile188Met	p.I188M	ENST00000257290	NM_006206.4	188	atC/atG						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579716	7579716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			9	351	349	0	ENST00000269305.4:c.80delC	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	27	cCt/ct						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508038	106508038	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	87	143	0	ENST00000359195.3:c.32T>G	p.Val11Gly	p.V11G	ENST00000359195	NM_002649.2	11	gTg/gGg						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32914070	32914070	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0003468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			24	266	555	4	ENST00000380152.3:c.5578A>T	p.Lys1860Ter	p.K1860*	ENST00000380152		1860	Aaa/Taa						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88420308	88420308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			7	258	255	0	ENST00000360948.2:c.2378G>A	p.Arg793Gln	p.R793Q	ENST00000360948	NM_001012338.2	793	cGa/cAa						NEWRECORD																																																																									
NCOA3	8202	MSKCC	GRCh37	20	46265017	46265019	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0003468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	236	491	0	ENST00000371998.3:c.1890_1892delTGA	p.Asp631del	p.D631del	ENST00000371998		629	tcTGAt/tct						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65312368	65312368	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149968614		P-0003419-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			588	45	298	0	ENST00000342505.4:c.1951G>A	p.Val651Met	p.V651M	ENST00000342505	NM_002227.2	651	Gtg/Atg						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65313336	65313336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003419-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			455	141	299	0	ENST00000342505.4:c.1778C>T	p.Thr593Met	p.T593M	ENST00000342505	NM_002227.2	593	aCg/aTg						NEWRECORD																																																																									
ETV6	2120	MSKCC	GRCh37	12	12038893	12038893	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003419-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			946	113	325	1	ENST00000396373.4:c.1186A>G	p.Arg396Gly	p.R396G	ENST00000396373	NM_001987.4	396	Aga/Gga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0002126-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			531	226	398	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142257388	142257388	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002126-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			588	227	349	0	ENST00000350721.4:c.3661C>A	p.Pro1221Thr	p.P1221T	ENST00000350721	NM_001184.3	1221	Cct/Act						NEWRECORD																																																																									
RPS6KA4	8986	MSKCC	GRCh37	11	64136984	64136984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002126-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	53	252	0	ENST00000334205.4:c.1495C>T	p.Arg499Trp	p.R499W	ENST00000334205	NM_003942.2	499	Cgg/Tgg						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88420258	88420258	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002828-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	58	556	0	ENST00000360948.2:c.2428G>C	p.Glu810Gln	p.E810Q	ENST00000360948	NM_001012338.2	810	Gaa/Caa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578226	7578226	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1464727668		P-0003761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	117	335	0	ENST00000269305.4:c.623A>T	p.Asp208Val	p.D208V	ENST00000269305	NM_001126112.2	208	gAc/gTc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0002207-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	404	424	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15995188	15995188	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002207-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			707	93	636	0	ENST00000268712.3:c.3005G>C	p.Arg1002Thr	p.R1002T	ENST00000268712	NM_006311.3	1002	aGa/aCa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27024029	27024029	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0002207-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			103	13	45	0	ENST00000324856.7:c.1135C>G	p.Gln379Glu	p.Q379E	ENST00000324856	NM_006015.4	379	Cag/Gag						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117710794	117710794	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002207-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			704	166	539	0	ENST00000368508.3:c.1478G>T	p.Arg493Leu	p.R493L	ENST00000368508	NM_002944.2	493	cGc/cTc						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91347415	91347415	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002207-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			499	45	389	2	ENST00000355112.3:c.3577G>C	p.Glu1193Gln	p.E1193Q	ENST00000355112	NM_000057.2	1193	Gaa/Caa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578446	7578446	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002207-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			275	164	368	0	ENST00000269305.4:c.484A>T	p.Ile162Phe	p.I162F	ENST00000269305	NM_001126112.2	162	Atc/Ttc						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42799254	42799254	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002207-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	32	195	0	ENST00000575354.2:c.4738G>C	p.Glu1580Gln	p.E1580Q	ENST00000575354	NM_015125.3	1580	Gag/Cag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782177		P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			834	162	175	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt						NEWRECORD																																																																									
MUTYH	4595	MSKCC	GRCh37	1	45797759	45797759	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			892	75	149	0	ENST00000372115.3:c.892-1G>T		p.X298_splice	ENST00000372115	NM_001048171.1	298							NEWRECORD																																																																									
MSH2	4436	MSKCC	GRCh37	2	47635608	47635608	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			677	93	113	0	ENST00000233146.2:c.280C>G	p.Leu94Val	p.L94V	ENST00000233146	NM_000251.2	94	Ctg/Gtg						NEWRECORD																																																																									
CTLA4	1493	MSKCC	GRCh37	2	204732725	204732725	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			938	121	119	0	ENST00000302823.3:c.60G>T	p.Trp20Cys	p.W20C	ENST00000302823	NM_005214.4	20	tgG/tgT						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89468414	89468414	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			597	173	87	0	ENST00000336596.2:c.1948G>T	p.Val650Leu	p.V650L	ENST00000336596	NM_005233.5	650	Gtg/Ttg						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86679595	86679595	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			713	308	101	0	ENST00000274376.6:c.2756C>T	p.Ser919Leu	p.S919L	ENST00000274376	NM_002890.2	919	tCa/tTa						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157150533	157150533	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	60	53	0	ENST00000346085.5:c.1715G>C	p.Gly572Ala	p.G572A	ENST00000346085	NM_020732.3	572	gGa/gCa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			744	74	109	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc						NEWRECORD																																																																									
CCND2	894	MSKCC	GRCh37	12	4398067	4398067	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			646	104	132	0	ENST00000261254.3:c.631A>T	p.Ile211Phe	p.I211F	ENST00000261254	NM_001759.3	211	Atc/Ttc						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49440412	49440412	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			555	86	93	0	ENST00000301067.7:c.4398G>T	p.Lys1466Asn	p.K1466N	ENST00000301067	NM_003482.3	1466	aaG/aaT						NEWRECORD																																																																									
TRAF7	84231	MSKCC	GRCh37	16	2222326	2222326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			794	65	162	0	ENST00000326181.6:c.610G>A	p.Glu204Lys	p.E204K	ENST00000326181	NM_032271.2	204	Gag/Aag						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7168073	7168073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			757	55	126	0	ENST00000302850.5:c.1516C>T	p.Arg506Trp	p.R506W	ENST00000302850	NM_000208.2	506	Cgg/Tgg						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36164775	36164775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			778	123	142	0	ENST00000300305.3:c.1100G>A	p.Gly367Asp	p.G367D	ENST00000300305		367	gGc/gAc						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47039611	47039611	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			643	108	115	0	ENST00000329236.7:c.829G>T	p.Glu277Ter	p.E277*	ENST00000329236	NM_001204466.1	277	Gag/Tag						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66765309	66765309	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1134	167	186	0	ENST00000374690.3:c.321C>G	p.Tyr107Ter	p.Y107*	ENST00000374690	NM_000044.3	107	taC/taG						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70341596	70341596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1228	148	169	1	ENST00000374080.3:c.1031C>A	p.Thr344Asn	p.T344N	ENST00000374080		344	aCt/aAt						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59857648	59857649	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			567	87	106	0	ENST00000259008.2:c.1908_1909delGGinsCT	p.GluAla636AspSer	p.EA636DS	ENST00000259008	NM_032043.2	636	gaGGct/gaCTct						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000798-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	157	490	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0000798-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			191	243	250	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2951925	2951925	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147381531		P-0000798-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			609	135	242	0	ENST00000396946.4:c.3025G>A	p.Val1009Ile	p.V1009I	ENST00000396946	NM_032415.4	1009	Gtc/Atc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000798-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			221	314	255	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31022346	31022346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000798-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1249	70	447	0	ENST00000375687.4:c.1831G>A	p.Ala611Thr	p.A611T	ENST00000375687	NM_015338.5	611	Gcc/Acc						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70342648	70342648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000798-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1302	489	734	0	ENST00000374080.3:c.1409G>A	p.Arg470His	p.R470H	ENST00000374080		470	cGc/cAc						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70357138	70357138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000798-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1682	725	1064	0	ENST00000374080.3:c.5653G>A	p.Val1885Ile	p.V1885I	ENST00000374080		1885	Gtc/Atc						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29432664	29432664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001768-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	109	534	0	ENST00000389048.3:c.3824G>A	p.Arg1275Gln	p.R1275Q	ENST00000389048	NM_004304.4	1275	cGa/cAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579341	7579345	+	frameshift_variant	Frame_Shift_Del	DEL	AATGC	AATGC	-			P-0001768-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			267	155	454	0	ENST00000269305.4:c.342_346del	p.Leu114PhefsTer33	p.L114Ffs*33	ENST00000269305	NM_001126112.2	114	ttGCATTct/ttct						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0000426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			336	159	412	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
GATA2	2624	MSKCC	GRCh37	3	128199974	128199974	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	56	299	0	ENST00000341105.2:c.1331C>A	p.Pro444Gln	p.P444Q	ENST00000341105	NM_032638.4	444	cCg/cAg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220476	1220476	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			566	219	472	0	ENST00000326873.7:c.569T>G	p.Leu190Arg	p.L190R	ENST00000326873	NM_000455.4	190	cTc/cGc						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600369	10600369	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			663	223	557	1	ENST00000171111.5:c.1486G>T	p.Glu496Ter	p.E496*	ENST00000171111	NM_203500.1	496	Gag/Tag						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11144090	11144090	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			519	78	435	0	ENST00000344626.4:c.3671T>C	p.Val1224Ala	p.V1224A	ENST00000344626	NM_003072.3	1224	gTg/gCg						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88420191	88420191	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			253	52	434	0	ENST00000360948.2:c.2495delC	p.Pro832GlnfsTer15	p.P832Qfs*15	ENST00000360948	NM_001012338.2	832	cCa/ca						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66937397	66937398	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0000426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	36	740	0	ENST00000374690.3:c.2251_2252delGGinsTT	p.Gly751Phe	p.G751F	ENST00000374690	NM_000044.3	751	GGc/TTc						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610136	10610136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	262	417	0	ENST00000171111.5:c.574G>A	p.Glu192Lys	p.E192K	ENST00000171111	NM_203500.1	192	Gag/Aag						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27101385	27101385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	204	330	0	ENST00000324856.7:c.4667G>T	p.Gly1556Val	p.G1556V	ENST00000324856	NM_006015.4	1556	gGt/gTt						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89468463	89468463	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	245	353	0	ENST00000336596.2:c.1997A>G	p.Asp666Gly	p.D666G	ENST00000336596	NM_005233.5	666	gAc/gGc						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55130071	55130071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	373	360	0	ENST00000257290.5:c.605C>A	p.Pro202Gln	p.P202Q	ENST00000257290	NM_006206.4	202	cCa/cAa						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157511337	157511337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	89	156	0	ENST00000346085.5:c.3855G>A	p.Met1285Ile	p.M1285I	ENST00000346085	NM_020732.3	1285	atG/atA						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128843246	128843246	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	167	354	0	ENST00000249373.3:c.353G>T	p.Cys118Phe	p.C118F	ENST00000249373	NM_005631.4	118	tGc/tTc						NEWRECORD																																																																									
GNAQ	2776	MSKCC	GRCh37	9	80430648	80430648	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	103	178	0	ENST00000286548.4:c.360G>C	p.Lys120Asn	p.K120N	ENST00000286548	NM_002072.3	120	aaG/aaC						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70405200	70405200	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	86	256	0	ENST00000373644.4:c.2714C>G	p.Ser905Ter	p.S905*	ENST00000373644	NM_030625.2	905	tCa/tGa						NEWRECORD																																																																									
MYOD1	4654	MSKCC	GRCh37	11	17741696	17741696	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	176	297	0	ENST00000250003.3:c.367A>T	p.Ser123Cys	p.S123C	ENST00000250003	NM_002478.4	123	Agc/Tgc						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57865296	57865296	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	975	584	1	ENST00000228682.2:c.2773T>A	p.Tyr925Asn	p.Y925N	ENST00000228682	NM_005269.2	925	Tac/Aac						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133237751	133237751	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	140	293	0	ENST00000320574.5:c.2865-1G>T		p.X955_splice	ENST00000320574	NM_006231.2	955							NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110434700	110434700	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	153	268	0	ENST00000375856.3:c.3701G>T	p.Ser1234Ile	p.S1234I	ENST00000375856	NM_003749.2	1234	aGc/aTc						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3808885	3808885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	335	299	0	ENST00000262367.5:c.3339G>T	p.Gln1113His	p.Q1113H	ENST00000262367	NM_004380.2	1113	caG/caT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	552	446	0	ENST00000269305.4:c.821T>A	p.Val274Asp	p.V274D	ENST00000269305	NM_001126112.2	274	gTt/gAt						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15995182	15995182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	219	418	0	ENST00000268712.3:c.3011G>T	p.Trp1004Leu	p.W1004L	ENST00000268712	NM_006311.3	1004	tGg/tTg						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37627955	37627955	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	233	404	0	ENST00000447079.4:c.1870A>T	p.Thr624Ser	p.T624S	ENST00000447079	NM_015083.1	624	Act/Tct						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39647380	39647380	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1306170227		P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	336	357	0	ENST00000262039.4:c.2552C>T	p.Ser851Leu	p.S851L	ENST00000262039	NM_002647.2	851	tCg/tTg						NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52716006	52716006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	162	447	0	ENST00000322088.6:c.571G>A	p.Glu191Lys	p.E191K	ENST00000322088	NM_014225.5	191	Gag/Aag						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41420070	41420070	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	89	261	0	ENST00000373198.4:c.251C>A	p.Ser84Tyr	p.S84Y	ENST00000373198	NM_133170.3	84	tCt/tAt						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44514606	44514606	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	115	230	0	ENST00000291552.4:c.550G>C	p.Glu184Gln	p.E184Q	ENST00000291552	NM_006758.2	184	Gag/Cag						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70341534	70341534	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	672	514	0	ENST00000374080.3:c.969G>C	p.Gln323His	p.Q323H	ENST00000374080		323	caG/caC						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76939457	76939457	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	137	489	0	ENST00000373344.5:c.1291G>T	p.Glu431Ter	p.E431*	ENST00000373344	NM_000489.3	431	Gag/Tag						NEWRECORD																																																																									
PIK3R3	8503	MSKCC	GRCh37	1	46532758	46532758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	100	262	0	ENST00000262741.5:c.320del	p.Gly107GlufsTer6	p.G107Efs*6	ENST00000262741	NM_003629.3	107	gGa/ga						NEWRECORD																																																																									
MRE11A	4361	MSKCC	GRCh37	11	94203726	94203727	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	143	301	0	ENST00000323929.3:c.927_928delinsTT	p.Met309_Glu310delinsIleTer	p.M309_E310delinsI*	ENST00000323929	NM_005591.3	309	atGGag/atTTag						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29917796	29917796	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002640-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			134	66	249	0	ENST00000389048.3:c.872G>C	p.Arg291Pro	p.R291P	ENST00000389048	NM_004304.4	291	cGc/cCc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000924-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			558	1355	358	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10597395	10597395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000924-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	274	334	0	ENST00000171111.5:c.1808G>T	p.Gly603Val	p.G603V	ENST00000171111	NM_203500.1	603	gGg/gTg						NEWRECORD																																																																									
RAD54L	8438	MSKCC	GRCh37	1	46743560	46743560	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000924-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	107	246	0	ENST00000371975.4:c.1941T>A	p.Asp647Glu	p.D647E	ENST00000371975	NM_003579.3	647	gaT/gaA						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2983863	2983863	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000924-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			699	179	377	0	ENST00000396946.4:c.667C>T	p.Arg223Ter	p.R223*	ENST00000396946	NM_032415.4	223	Cga/Tga						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8484300	8484300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000924-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	275	368	0	ENST00000356435.5:c.3232G>A	p.Glu1078Lys	p.E1078K	ENST00000356435		1078	Gag/Aag						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971155	21971155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000924-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			78	57	69	0	ENST00000304494.5:c.203C>A	p.Ala68Glu	p.A68E	ENST00000304494	NM_000077.4	68	gCg/gAg						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061046	38061046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000924-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			141	40	124	0	ENST00000250448.2:c.943G>T	p.Gly315Trp	p.G315W	ENST00000250448	NM_004496.3	315	Ggg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577126	7577126	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000924-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	249	378	0	ENST00000269305.4:c.812A>T	p.Glu271Val	p.E271V	ENST00000269305	NM_001126112.2	271	gAg/gTg						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215645396	215645396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			451	46	425	0	ENST00000260947.4:c.1202G>A	p.Ser401Asn	p.S401N	ENST00000260947	NM_000465.2	401	aGt/aAt						NEWRECORD																																																																									
RAF1	5894	MSKCC	GRCh37	3	12647767	12647767	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	56	358	0	ENST00000251849.4:c.613G>C	p.Gly205Arg	p.G205R	ENST00000251849	NM_002880.3	205	Gga/Cga						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52702621	52702621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	41	353	0	ENST00000394830.3:c.277G>A	p.Asp93Asn	p.D93N	ENST00000394830	NM_018313.4	93	Gac/Aac						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187516926	187516926	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			301	71	316	0	ENST00000441802.2:c.13055C>G	p.Pro4352Arg	p.P4352R	ENST00000441802	NM_005245.3	4352	cCt/cGt						NEWRECORD																																																																									
NPM1	4869	MSKCC	GRCh37	5	170818313	170818313	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			667	56	687	0	ENST00000296930.5:c.143G>C	p.Ser48Thr	p.S48T	ENST00000296930	NM_002520.6	48	aGt/aCt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578199	7578199	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	75	489	0	ENST00000269305.4:c.650del	p.Val217GlyfsTer30	p.V217Gfs*30	ENST00000269305	NM_001126112.2	217	gTg/gg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0002995-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			154	656	703	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115117311	115117311	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0002995-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			540	389	491	0	ENST00000257566.3:c.863delA	p.Lys288ArgfsTer2	p.K288Rfs*2	ENST00000257566	NM_016569.3	288	aAg/ag						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68855965	68856011	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCCCCATACCAGAACCTCGAACTATATTCTTCTGTGAGAGGAATC	CGCCCCCATACCAGAACCTCGAACTATATTCTTCTGTGAGAGGAATC	-			P-0002995-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			145	506	677	0	ENST00000261769.5:c.1774_1820del	p.Ala592LysfsTer9	p.A592Kfs*9	ENST00000261769	NM_004360.3	591	aaCGCCCCCATACCAGAACCTCGAACTATATTCTTCTGTGAGAGGAATCca/aaca						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	171	277	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151949126	151949126	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	204	347	0	ENST00000262189.6:c.1519C>T	p.Gln507Ter	p.Q507*	ENST00000262189	NM_170606.2	507	Cag/Tag						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89653800	89653800	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	159	264	0	ENST00000371953.3:c.98T>G	p.Ile33Ser	p.I33S	ENST00000371953	NM_000314.4	33	aTt/aGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578480	7578488	+	inframe_deletion	In_Frame_Del	DEL	TGTGGAATC	TGTGGAATC	-			P-0003778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	439	233	0	ENST00000269305.4:c.442_450del	p.Asp148_Thr150del	p.D148_T150del	ENST00000269305	NM_001126112.2	148	GATTCCACA/-						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0000167-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			369	80	190	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0000167-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			312	13	131	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29553702	29553702	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0000167-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	57	113	0	ENST00000358273.4:c.2251G>A	p.Gly751Arg	p.G751R	ENST00000358273	NM_001042492.2	751	Gga/Aga						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68849521	68849521	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000167-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			621	178	456	0	ENST00000261769.5:c.1424delT	p.Val475GlyfsTer6	p.V475Gfs*6	ENST00000261769	NM_004360.3	475	gTg/gg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			233	160	255	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56155653	56155653	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200234617		P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	44	207	0	ENST00000399503.3:c.745C>T	p.Arg249Cys	p.R249C	ENST00000399503	NM_005921.1	249	Cgc/Tgc						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16255917	16255917	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	30	185	0	ENST00000375759.3:c.3182C>G	p.Ala1061Gly	p.A1061G	ENST00000375759	NM_015001.2	1061	gCc/gGc						NEWRECORD																																																																									
MPL	4352	MSKCC	GRCh37	1	43812197	43812197	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			408	72	391	0	ENST00000372470.3:c.1062C>G	p.Phe354Leu	p.F354L	ENST00000372470	NM_005373.2	354	ttC/ttG						NEWRECORD																																																																									
RFWD2	64326	MSKCC	GRCh37	1	176118155	176118155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			396	27	314	0	ENST00000367669.3:c.818G>T	p.Arg273Ile	p.R273I	ENST00000367669	NM_022457.5	273	aGa/aTa						NEWRECORD																																																																									
FH	2271	MSKCC	GRCh37	1	241667414	241667414	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			637	54	334	0	ENST00000366560.3:c.1036G>T	p.Gly346Cys	p.G346C	ENST00000366560	NM_000143.3	346	Ggt/Tgt						NEWRECORD																																																																									
IRS1	3667	MSKCC	GRCh37	2	227662185	227662185	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			397	201	307	0	ENST00000305123.5:c.1270G>T	p.Gly424Cys	p.G424C	ENST00000305123	NM_005544.2	424	Ggt/Tgt						NEWRECORD																																																																									
PDCD1	5133	MSKCC	GRCh37	2	242794882	242794882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			409	91	306	0	ENST00000334409.5:c.327C>A	p.Ser109Arg	p.S109R	ENST00000334409	NM_005018.2	109	agC/agA						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142231213	142231213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			387	111	333	0	ENST00000350721.4:c.4741G>T	p.Val1581Leu	p.V1581L	ENST00000350721	NM_001184.3	1581	Gtg/Ttg						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187531001	187531001	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			416	111	292	0	ENST00000441802.2:c.10022C>A	p.Thr3341Lys	p.T3341K	ENST00000441802	NM_005245.3	3341	aCg/aAg						NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056641	26056641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			107	61	71	0	ENST00000343677.2:c.16C>T	p.Pro6Ser	p.P6S	ENST00000343677	NM_005319.3	6	Cct/Tct						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30671021	30671021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	86	275	0	ENST00000376406.3:c.5725G>C	p.Val1909Leu	p.V1909L	ENST00000376406	NM_014641.2	1909	Gtg/Ctg						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32170323	32170323	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	130	186	0	ENST00000375023.3:c.3285C>G	p.His1095Gln	p.H1095Q	ENST00000375023	NM_004557.3	1095	caC/caG						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50467844	50467844	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	136	205	0	ENST00000331340.3:c.1079G>T	p.Arg360Leu	p.R360L	ENST00000331340	NM_006060.4	360	cGc/cTc						NEWRECORD																																																																									
CD79B	974	MSKCC	GRCh37	17	62006645	62006645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			286	161	336	0	ENST00000392795.3:c.634G>A	p.Val212Met	p.V212M	ENST00000392795	NM_001039933.1	212	Gtg/Atg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221947	1221947	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	142	307	0	ENST00000326873.7:c.863-1G>T		p.X288_splice	ENST00000326873	NM_000455.4	288							NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600447	10600447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			324	170	357	0	ENST00000171111.5:c.1408C>T	p.Arg470Cys	p.R470C	ENST00000171111	NM_203500.1	470	Cgt/Tgt						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11141519	11141519	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			308	171	305	1	ENST00000344626.4:c.3496C>T	p.Gln1166Ter	p.Q1166*	ENST00000344626	NM_003072.3	1166	Cag/Tag						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76938646	76938646	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	109	214	1	ENST00000373344.5:c.2102G>T	p.Arg701Leu	p.R701L	ENST00000373344	NM_000489.3	701	cGt/cTt						NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100617162	100617162	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			189	158	210	0	ENST00000308731.7:c.587A>T	p.Gln196Leu	p.Q196L	ENST00000308731	NM_000061.2	196	cAg/cTg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			446	164	261	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	81	440	0	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag						NEWRECORD																																																																									
CASP8	841	MSKCC	GRCh37	2	202141586	202141586	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760898260		P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			720	145	531	0	ENST00000358485.4:c.874C>T	p.Arg292Trp	p.R292W	ENST00000358485	NM_001080125.1	292	Cgg/Tgg						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133263850	133263850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			152	36	212	0	ENST00000320574.5:c.52G>A	p.Glu18Lys	p.E18K	ENST00000320574	NM_006231.2	18	Gag/Aag						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118307502	118307502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			352	73	478	0	ENST00000534358.1:c.275C>T	p.Ser92Leu	p.S92L	ENST00000534358	NM_005933.3	92	tCg/tTg						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12011144	12011144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			528	138	519	0	ENST00000353533.5:c.551C>T	p.Ser184Leu	p.S184L	ENST00000353533	NM_003010.3	184	tCg/tTg						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65306987	65306987	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			645	140	524	0	ENST00000342505.4:c.2590G>T	p.Glu864Ter	p.E864*	ENST00000342505	NM_002227.2	864	Gaa/Taa						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65309819	65309819	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			557	110	551	0	ENST00000342505.4:c.2331G>C	p.Trp777Cys	p.W777C	ENST00000342505	NM_002227.2	777	tgG/tgC						NEWRECORD																																																																									
CDC73	79577	MSKCC	GRCh37	1	193111000	193111000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			539	85	377	0	ENST00000367435.3:c.533C>T	p.Ser178Leu	p.S178L	ENST00000367435	NM_024529.4	178	tCa/tTa						NEWRECORD																																																																									
CDC73	79577	MSKCC	GRCh37	1	193111022	193111022	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			625	99	406	0	ENST00000367435.3:c.555C>G	p.Ile185Met	p.I185M	ENST00000367435	NM_024529.4	185	atC/atG						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266893	41266893	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			662	156	563	0	ENST00000349496.5:c.564C>G	p.Ile188Met	p.I188M	ENST00000349496	NM_001904.3	188	atC/atG						NEWRECORD																																																																									
RHOA	387	MSKCC	GRCh37	3	49405870	49405870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			574	116	676	0	ENST00000418115.1:c.268G>A	p.Asp90Asn	p.D90N	ENST00000418115	NM_001664.2	90	Gat/Aat						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89390170	89390170	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148593404		P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			515	154	587	0	ENST00000336596.2:c.919G>A	p.Glu307Lys	p.E307K	ENST00000336596	NM_005233.5	307	Gag/Aag						NEWRECORD																																																																									
GATA2	2624	MSKCC	GRCh37	3	128204891	128204891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			503	105	559	0	ENST00000341105.2:c.550G>A	p.Asp184Asn	p.D184N	ENST00000341105	NM_032638.4	184	Gac/Aac						NEWRECORD																																																																									
SDHA	6389	MSKCC	GRCh37	5	231100	231100	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			354	68	300	0	ENST00000264932.6:c.880C>G	p.Gln294Glu	p.Q294E	ENST00000264932	NM_004168.2	294	Cag/Gag						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131953918	131953918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			684	127	363	0	ENST00000265335.6:c.3321G>A	p.Met1107Ile	p.M1107I	ENST00000265335		1107	atG/atA						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131953955	131953955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			595	98	322	0	ENST00000265335.6:c.3358G>A	p.Asp1120Asn	p.D1120N	ENST00000265335		1120	Gat/Aat						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131953963	131953963	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	84	307	0	ENST00000265335.6:c.3366T>A	p.Asp1122Glu	p.D1122E	ENST00000265335		1122	gaT/gaA						NEWRECORD																																																																									
FGFR4	2264	MSKCC	GRCh37	5	176523718	176523718	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140492176		P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	59	519	0	ENST00000292408.4:c.2129G>A	p.Arg710Gln	p.R710Q	ENST00000292408	NM_213647.1	710	cGa/cAa						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176715836	176715836	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			794	176	611	0	ENST00000439151.2:c.6168C>G	p.Phe2056Leu	p.F2056L	ENST00000439151	NM_022455.4	2056	ttC/ttG						NEWRECORD																																																																									
E2F3	1871	MSKCC	GRCh37	6	20481439	20481439	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	102	395	0	ENST00000346618.3:c.508C>A	p.Pro170Thr	p.P170T	ENST00000346618	NM_001949.4	170	Cca/Aca						NEWRECORD																																																																									
CDKN1A	1026	MSKCC	GRCh37	6	36652203	36652203	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	80	412	0	ENST00000244741.5:c.325G>C	p.Asp109His	p.D109H	ENST00000244741	NM_000389.4	109	Gac/Cac						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157525098	157525098	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			651	161	500	1	ENST00000346085.5:c.4993G>T	p.Asp1665Tyr	p.D1665Y	ENST00000346085	NM_020732.3	1665	Gac/Tac						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151846012	151846012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			554	99	487	0	ENST00000262189.6:c.13000C>T	p.Arg4334Trp	p.R4334W	ENST00000262189	NM_170606.2	4334	Cgg/Tgg						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32450084	32450084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	82	508	0	ENST00000332351.3:c.728C>T	p.Ser243Leu	p.S243L	ENST00000332351	NM_024426.4	243	tCa/tTa						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56482351	56482351	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	158	602	0	ENST00000267101.3:c.899C>G	p.Ser300Cys	p.S300C	ENST00000267101	NM_001982.3	300	tCc/tGc						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56495375	56495375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			687	123	591	0	ENST00000267101.3:c.3565G>A	p.Glu1189Lys	p.E1189K	ENST00000267101	NM_001982.3	1189	Gaa/Aaa						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28919675	28919675	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			583	129	509	0	ENST00000282397.4:c.2262G>C	p.Lys754Asn	p.K754N	ENST00000282397	NM_002019.4	754	aaG/aaC						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32929131	32929131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			950	166	590	0	ENST00000380152.3:c.7141C>T	p.Pro2381Ser	p.P2381S	ENST00000380152		2381	Cca/Tca						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32972596	32972596	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			673	124	459	0	ENST00000380152.3:c.9946G>C	p.Glu3316Gln	p.E3316Q	ENST00000380152		3316	Gaa/Caa						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105240300	105240300	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	61	455	0	ENST00000349310.3:c.651C>G	p.Phe217Leu	p.F217L	ENST00000349310	NM_001014432.1	217	ttC/ttG						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105242021	105242021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			233	205	601	0	ENST00000349310.3:c.403G>C	p.Glu135Gln	p.E135Q	ENST00000349310	NM_001014432.1	135	Gag/Cag						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2127688	2127688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			480	88	564	1	ENST00000219476.3:c.2927G>A	p.Arg976Gln	p.R976Q	ENST00000219476	NM_000548.3	976	cGg/cAg						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857082	9857082	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			668	105	543	0	ENST00000330684.3:c.4319C>G	p.Ser1440Cys	p.S1440C	ENST00000330684	NM_001134407.1	1440	tCt/tGt						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9928088	9928088	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			551	119	377	0	ENST00000330684.3:c.1652-1G>A		p.X551_splice	ENST00000330684	NM_001134407.1	551							NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29664405	29664405	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			734	131	498	0	ENST00000358273.4:c.6447G>C	p.Leu2149Phe	p.L2149F	ENST00000358273	NM_001042492.2	2149	ttG/ttC						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63533788	63533788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			248	61	433	0	ENST00000307078.5:c.1366G>A	p.Gly456Ser	p.G456S	ENST00000307078	NM_004655.3	456	Ggc/Agc						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70117707	70117707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			301	128	710	0	ENST00000245479.2:c.175G>A	p.Asp59Asn	p.D59N	ENST00000245479	NM_000346.3	59	Gat/Aat						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2223448	2223448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			206	50	412	0	ENST00000398665.3:c.3559G>A	p.Glu1187Lys	p.E1187K	ENST00000398665	NM_032482.2	1187	Gag/Aag						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42796942	42796942	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	71	514	0	ENST00000575354.2:c.3400C>G	p.Leu1134Val	p.L1134V	ENST00000575354	NM_015125.3	1134	Ctg/Gtg						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123182858	123182858	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			721	152	549	0	ENST00000218089.9:c.823C>T	p.Gln275Ter	p.Q275*	ENST00000218089	NM_001042749.1	275	Cag/Tag						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	338123	338123	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	79	592	0	ENST00000262320.3:c.2588G>C	p.Ter863SerextTer1	p.*863Sext*1	ENST00000262320	NM_003502.3	863	tGa/tCa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0002534-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			352	782	335	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577495	7577512	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGACCTGGAGTCTTCCAG	TGACCTGGAGTCTTCCAG	-			P-0002534-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			169	52	234	0	ENST00000269305.4:c.769_782+4del		p.X257_splice	ENST00000269305	NM_001126112.2	257							NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180058756	180058756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000140-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			264	28	324	0	ENST00000261937.6:c.81G>T	p.Met27Ile	p.M27I	ENST00000261937	NM_182925.4	27	atG/atT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0004152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	162	202	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65309900	65309900	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0004152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	178	213	0	ENST00000342505.4:c.2252-2A>G		p.X751_splice	ENST00000342505	NM_002227.2	751							NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150005131	150005131	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	223	285	0	ENST00000253339.5:c.1094C>A	p.Ala365Asp	p.A365D	ENST00000253339		365	gCt/gAt						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152129191	152129191	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	317	366	0	ENST00000206249.3:c.144G>T	p.Lys48Asn	p.K48N	ENST00000206249	NM_000125.3	48	aaG/aaT						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152265517	152265517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	191	209	0	ENST00000206249.3:c.970C>T	p.Pro324Ser	p.P324S	ENST00000206249	NM_000125.3	324	Ccc/Tcc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151856030	151856030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	352	407	0	ENST00000262189.6:c.11588C>T	p.Pro3863Leu	p.P3863L	ENST00000262189	NM_170606.2	3863	cCt/cTt						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145742111	145742111	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	116	106	0	ENST00000428558.2:c.392G>T	p.Gly131Val	p.G131V	ENST00000428558	NM_004260.3	131	gGa/gTa						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87635167	87635167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	230	242	0	ENST00000277120.3:c.2219G>A	p.Ser740Asn	p.S740N	ENST00000277120		740	aGc/aAc						NEWRECORD																																																																									
MYOD1	4654	MSKCC	GRCh37	11	17741928	17741928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	39	28	0	ENST00000250003.3:c.599C>A	p.Ser200Tyr	p.S200Y	ENST00000250003	NM_002478.4	200	tCc/tAc						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64573153	64573153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	216	274	1	ENST00000337652.1:c.1154C>A	p.Ala385Asp	p.A385D	ENST00000337652	NM_130803.2	385	gCc/gAc						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41564823	41564823	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	247	286	0	ENST00000263253.7:c.4124G>T	p.Gly1375Val	p.G1375V	ENST00000263253	NM_001429.3	1375	gGc/gTc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			74	77	454	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0001964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			22	40	387	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0001964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			49	47	336	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			812	352	504	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			629	219	435	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38064108	38064108	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			765	364	406	0	ENST00000250448.2:c.70G>A	p.Glu24Lys	p.E24K	ENST00000250448	NM_004496.3	24	Gag/Aag						NEWRECORD																																																																									
CBFB	865	MSKCC	GRCh37	16	67063346	67063346	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	251	380	0	ENST00000412916.2:c.36C>G	p.Phe12Leu	p.F12L	ENST00000412916		12	ttC/ttG						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0001874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			898	478	604	2	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56170966	56170966	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			702	287	440	0	ENST00000399503.3:c.1796delA	p.Asn599MetfsTer57	p.N599Mfs*57	ENST00000399503	NM_005921.1	598	gcA/gc						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56177781	56177781	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			812	330	454	0	ENST00000399503.3:c.2757delA	p.Lys919AsnfsTer2	p.K919Nfs*2	ENST00000399503	NM_005921.1	918	acA/ac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			862	496	536	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29519775	29519775	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			672	63	348	0	ENST00000389048.3:c.1796C>A	p.Pro599His	p.P599H	ENST00000389048	NM_004304.4	599	cCt/cAt						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185191005	185191005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1523	143	923	0	ENST00000265026.3:c.1886C>T	p.Pro629Leu	p.P629L	ENST00000265026	NM_004721.4	629	cCt/cTt						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189455653	189455653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			558	117	316	0	ENST00000264731.3:c.187G>A	p.Glu63Lys	p.E63K	ENST00000264731	NM_003722.4	63	Gaa/Aaa						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143130067	143130067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			884	79	492	0	ENST00000262992.4:c.949G>A	p.Glu317Lys	p.E317K	ENST00000262992	NM_001101669.1	317	Gaa/Aaa						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30680755	30680755	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1103	96	648	0	ENST00000376406.3:c.964C>T	p.Gln322Ter	p.Q322*	ENST00000376406	NM_014641.2	322	Cag/Tag						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8518153	8518153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			859	70	427	0	ENST00000356435.5:c.1238C>T	p.Ser413Leu	p.S413L	ENST00000356435		413	tCa/tTa						NEWRECORD																																																																									
ETV6	2120	MSKCC	GRCh37	12	12038912	12038912	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			804	535	511	0	ENST00000396373.4:c.1205A>G	p.Tyr402Cys	p.Y402C	ENST00000396373	NM_001987.4	402	tAc/tGc						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49426639	49426662	+	inframe_deletion	In_Frame_Del	DEL	TGTTGAAGCTGTTGCTGCTGCTGT	TGTTGAAGCTGTTGCTGCTGCTGT	-			P-0000622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			740	52	381	0	ENST00000301067.7:c.11826_11849delACAGCAGCAGCAACAGCTTCAACA	p.Gln3947_Gln3954del	p.Q3947_Q3954del	ENST00000301067	NM_003482.3	3942	caACAGCAGCAGCAACAGCTTCAACAg/cag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0001376-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			71	63	152	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc						NEWRECORD																																																																									
EPCAM	4072	MSKCC	GRCh37	2	47606967	47606967	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001376-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			252	143	286	0	ENST00000263735.4:c.717A>T	p.Gln239His	p.Q239H	ENST00000263735	NM_002354.2	239	caA/caT						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56161243	56161243	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0001376-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	151	245	1	ENST00000399503.3:c.1112C>G	p.Ser371Ter	p.S371*	ENST00000399503	NM_005921.1	371	tCa/tGa						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717678	89717678	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001376-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			111	377	222	0	ENST00000371953.3:c.703G>T	p.Glu235Ter	p.E235*	ENST00000371953	NM_000314.4	235	Gaa/Taa						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46242635	46242635	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001376-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	110	196	0	ENST00000334344.6:c.1597G>T	p.Glu533Ter	p.E533*	ENST00000334344	NM_152641.2	533	Gaa/Taa						NEWRECORD																																																																									
GREM1	26585	MSKCC	GRCh37	15	33023095	33023095	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001376-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			32	36	155	0	ENST00000300177.4:c.204G>C	p.Met68Ile	p.M68I	ENST00000300177	NM_001191322.1	68	atG/atC						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116411884	116411903	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTTCTCTCTGTTTTAAGA	TCTTTCTCTCTGTTTTAAGA	-			P-0003735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	48	266	0	ENST00000397752.3:c.2888-16_2891del		p.X963_splice	ENST00000397752	NM_000245.2	963							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000592-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	47	126	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
IKBKE	9641	MSKCC	GRCh37	1	206647678	206647678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000592-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			301	21	245	0	ENST00000367120.3:c.92C>T	p.Ser31Phe	p.S31F	ENST00000367120	NM_014002.3	31	tCc/tTc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000592-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			695	248	313	0	ENST00000263967.3:c.3129G>C	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atC						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12028618	12028618	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000592-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			404	179	363	0	ENST00000353533.5:c.821G>C	p.Arg274Thr	p.R274T	ENST00000353533	NM_003010.3	274	aGa/aCa						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68842605	68842605	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000592-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			250	133	377	0	ENST00000261769.5:c.542delA	p.Asn181ThrfsTer34	p.N181Tfs*34	ENST00000261769	NM_004360.3	181	Aac/ac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0002291-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			743	45	537	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0002291-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			355	26	256	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0002291-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			929	63	525	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128851477	128851477	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002291-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			653	36	444	1	ENST00000249373.3:c.1802C>T	p.Ala601Val	p.A601V	ENST00000249373	NM_005631.4	601	gCg/gTg						NEWRECORD																																																																									
FOXP1	27086	MSKCC	GRCh37	3	71090489	71090496	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGAGTG	TGGGAGTG	-			P-0002291-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			772	46	469	0	ENST00000318789.4:c.852_859del	p.His284GlnfsTer8	p.H284Qfs*8	ENST00000318789	NM_032682.5	284	caCACTCCCAaa/caaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0003816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	377	324	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120458562	120458562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	42	284	0	ENST00000256646.2:c.6783G>C	p.Glu2261Asp	p.E2261D	ENST00000256646	NM_024408.3	2261	gaG/gaC						NEWRECORD																																																																									
PAK1	5058	MSKCC	GRCh37	11	77060289	77060289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	182	279	0	ENST00000356341.3:c.880C>G	p.Gln294Glu	p.Q294E	ENST00000356341	NM_002576.4	294	Cag/Gag						NEWRECORD																																																																									
MAPK3	5595	MSKCC	GRCh37	16	30129683	30129683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	78	513	0	ENST00000263025.4:c.530C>T	p.Thr177Ile	p.T177I	ENST00000263025	NM_002746.2	177	aCc/aTc						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63533761	63533764	+	frameshift_variant	Frame_Shift_Del	DEL	GGGA	GGGA	-			P-0003816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	65	239	0	ENST00000307078.5:c.1390_1393del	p.Ser464AlafsTer42	p.S464Afs*42	ENST00000307078	NM_004655.3	464	TCCCgc/gc						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108164066	108164078	+	frameshift_variant	Frame_Shift_Del	DEL	GATAGATAACAAG	GATAGATAACAAG	-			P-0003816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	35	256	0	ENST00000278616.4:c.4642_4654del	p.Asp1548MetfsTer11	p.D1548Mfs*11	ENST00000278616	NM_000051.3	1546	gtGATAGATAACAAG/gt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			116	102	442	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0002001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			99	23	153	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47058678	47058678	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			151	91	567	0	ENST00000409792.3:c.7600G>C	p.Glu2534Gln	p.E2534Q	ENST00000409792	NM_014159.6	2534	Gag/Cag						NEWRECORD																																																																									
IFNGR1	3459	MSKCC	GRCh37	6	137519446	137519446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			176	45	355	0	ENST00000367739.4:c.1192C>T	p.His398Tyr	p.H398Y	ENST00000367739	NM_000416.2	398	Cac/Tac						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70426875	70426875	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			192	39	417	0	ENST00000373644.4:c.4535C>G	p.Thr1512Ser	p.T1512S	ENST00000373644	NM_030625.2	1512	aCt/aGt						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133257249	133257249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	81	554	0	ENST00000320574.5:c.229C>T	p.Arg77Cys	p.R77C	ENST00000320574	NM_006231.2	77	Cgc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			119	218	504	0	ENST00000269305.4:c.808T>G	p.Phe270Val	p.F270V	ENST00000269305	NM_001126112.2	270	Ttt/Gtt						NEWRECORD																																																																									
AKT2	208	MSKCC	GRCh37	19	40743877	40743877	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0002001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			476	53	398	1	ENST00000392038.2:c.830A>G	p.Lys277Arg	p.K277R	ENST00000392038	NM_001626.4	277	aAg/aGg						NEWRECORD																																																																									
MAX	4149	MSKCC	GRCh37	14	65544654	65544654	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			111	200	527	0	ENST00000358664.4:c.272del	p.Gln91ArgfsTer79	p.Q91Rfs*79	ENST00000358664	NM_002382.4	91	cAg/cg						NEWRECORD																																																																									
ERRFI1	54206	MSKCC	GRCh37	1	8073710	8073710	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143947835		P-0004250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1475	509	571	0	ENST00000377482.5:c.949C>T	p.Pro317Ser	p.P317S	ENST00000377482	NM_018948.3	317	Ccc/Tcc						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55140760	55140760	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1327	86	351	0	ENST00000257290.5:c.1621T>A	p.Ser541Thr	p.S541T	ENST00000257290	NM_006206.4	541	Tca/Aca						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187525729	187525729	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	80	222	0	ENST00000441802.2:c.10351-1G>T		p.X3451_splice	ENST00000441802	NM_005245.3	3451							NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8492862	8492862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	173	275	0	ENST00000356435.5:c.2467G>T	p.Val823Phe	p.V823F	ENST00000356435		823	Gtt/Ttt						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8528638	8528638	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1177	211	364	0	ENST00000356435.5:c.494C>G	p.Pro165Arg	p.P165R	ENST00000356435		165	cCt/cGt						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28959044	28959044	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	155	393	0	ENST00000282397.4:c.2094C>A	p.Asn698Lys	p.N698K	ENST00000282397	NM_002019.4	698	aaC/aaA						NEWRECORD																																																																									
SUZ12	23512	MSKCC	GRCh37	17	30315339	30315339	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0004250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	148	258	0	ENST00000322652.5:c.1024A>T	p.Arg342Trp	p.R342W	ENST00000322652	NM_015355.2	342	Agg/Tgg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207088	1207099	+	inframe_deletion	In_Frame_Del	DEL	CTTACGGCAAGG	CTTACGGCAAGG	-			P-0004250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	221	332	0	ENST00000326873.7:c.176_187del	p.Ser59_Val63delinsLeu	p.S59_V63delinsL	ENST00000326873	NM_000455.4	59	tCTTACGGCAAGGtg/ttg						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2222176	2222176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	133	343	0	ENST00000398665.3:c.3010del	p.His1004ThrfsTer64	p.H1004Tfs*64	ENST00000398665	NM_032482.2	1003	gCc/gc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579471	7579472	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0004250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	131	249	0	ENST00000269305.4:c.215_216delinsT	p.Pro72LeufsTer51	p.P72Lfs*51	ENST00000269305	NM_001126112.2	72	cCC/cT						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs80359509		P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	195	337	0	ENST00000380152.3:c.5351delA	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			267	286	274	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			340	238	360	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			279	227	191	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt						NEWRECORD																																																																									
PIK3CD	5293	MSKCC	GRCh37	1	9770626	9770626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	718	506	0	ENST00000377346.4:c.113G>A	p.Arg38His	p.R38H	ENST00000377346	NM_005026.3	38	cGc/cAc						NEWRECORD																																																																									
PIK3CD	5293	MSKCC	GRCh37	1	9784113	9784113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	449	279	0	ENST00000377346.4:c.2681G>A	p.Arg894Gln	p.R894Q	ENST00000377346	NM_005026.3	894	cGg/cAg						NEWRECORD																																																																									
SDHB	6390	MSKCC	GRCh37	1	17349180	17349180	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138996609		P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	200	293	0	ENST00000375499.3:c.688C>T	p.Arg230Cys	p.R230C	ENST00000375499	NM_003000.2	230	Cgc/Tgc						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47125722	47125722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			396	288	387	0	ENST00000409792.3:c.5548C>T	p.Arg1850Cys	p.R1850C	ENST00000409792	NM_014159.6	1850	Cgt/Tgt						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187525017	187525017	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			206	245	262	0	ENST00000441802.2:c.10663T>C	p.Ser3555Pro	p.S3555P	ENST00000441802	NM_005245.3	3555	Tct/Cct						NEWRECORD																																																																									
FGFR4	2264	MSKCC	GRCh37	5	176517609	176517609	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			379	305	513	0	ENST00000292408.4:c.310C>T	p.Arg104Ter	p.R104*	ENST00000292408	NM_213647.1	104	Cga/Tga						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157469811	157469811	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145635490		P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	396	450	0	ENST00000346085.5:c.2605G>A	p.Gly869Ser	p.G869S	ENST00000346085	NM_020732.3	869	Ggc/Agc						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145738383	145738383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1087	167	439	1	ENST00000428558.2:c.2602G>A	p.Val868Met	p.V868M	ENST00000428558	NM_004260.3	868	Gtg/Atg						NEWRECORD																																																																									
SUFU	51684	MSKCC	GRCh37	10	104268939	104268939	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	493	534	0	ENST00000369902.3:c.196G>T	p.Asp66Tyr	p.D66Y	ENST00000369902	NM_016169.3	66	Gac/Tac						NEWRECORD																																																																									
RPS6KA4	8986	MSKCC	GRCh37	11	64129428	64129428	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61736650		P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			370	338	434	0	ENST00000334205.4:c.860C>T	p.Ala287Val	p.A287V	ENST00000334205	NM_003942.2	287	gCg/gTg						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118390716	118390716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	298	367	1	ENST00000534358.1:c.11366G>A	p.Arg3789His	p.R3789H	ENST00000534358	NM_005933.3	3789	cGt/cAt						NEWRECORD																																																																									
H3F3C	440093	MSKCC	GRCh37	12	31944812	31944812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			270	229	284	0	ENST00000340398.3:c.289G>A	p.Glu97Lys	p.E97K	ENST00000340398	NM_001013699.2	97	Gaa/Aaa						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3900776	3900776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			167	122	199	0	ENST00000262367.5:c.320C>T	p.Pro107Leu	p.P107L	ENST00000262367	NM_004380.2	107	cCg/cTg						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857895	9857895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	258	462	0	ENST00000330684.3:c.3506G>A	p.Arg1169Gln	p.R1169Q	ENST00000330684	NM_001134407.1	1169	cGg/cAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			189	156	210	0	ENST00000269305.4:c.673-2A>C		p.X225_splice	ENST00000269305	NM_001126112.2	225							NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37871997	37871997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			435	325	475	1	ENST00000269571.5:c.1318G>A	p.Ala440Thr	p.A440T	ENST00000269571		440	Gcc/Acc						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2226443	2226443	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773019943		P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			724	301	421	0	ENST00000398665.3:c.3923C>T	p.Pro1308Leu	p.P1308L	ENST00000398665	NM_032482.2	1308	cCg/cTg						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31389135	31389135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	350	463	0	ENST00000328111.2:c.2048G>A	p.Arg683His	p.R683H	ENST00000328111	NM_006892.3	683	cGc/cAc						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16263661	16263663	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			238	310	201	0	ENST00000375759.3:c.10036_10038del	p.Pro3346del	p.P3346del	ENST00000375759	NM_015001.2	3344	CCT/-						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173831	112173831	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			232	218	282	0	ENST00000257430.4:c.2544del	p.Asp849IlefsTer12	p.D849Ifs*12	ENST00000257430	NM_000038.5	847	gAa/ga						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48916766	48916766	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			23	227	303	0	ENST00000267163.4:c.299del	p.Gly100GlufsTer11	p.G100Efs*11	ENST00000267163	NM_000321.2	99	tGg/tg						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061169	38061169	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001325-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			156	154	185	1	ENST00000250448.2:c.820del	p.Ala274ProfsTer47	p.A274Pfs*47	ENST00000250448	NM_004496.3	274	Gcc/cc						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0001661-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			237	104	330	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0004020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	152	217	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
MUTYH	4595	MSKCC	GRCh37	1	45798590	45798590	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	53	189	0	ENST00000372115.3:c.462G>T	p.Glu154Asp	p.E154D	ENST00000372115	NM_001048171.1	154	gaG/gaT						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178922322	178922322	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	47	179	0	ENST00000263967.3:c.1091G>C	p.Gly364Ala	p.G364A	ENST00000263967	NM_006218.2	364	gGa/gCa						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7126618	7126618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	75	156	0	ENST00000302850.5:c.2990C>T	p.Pro997Leu	p.P997L	ENST00000302850	NM_000208.2	997	cCt/cTt						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47045872	47045872	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0004020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	151	218	0	ENST00000329236.7:c.2434-1G>T		p.X812_splice	ENST00000329236	NM_001204466.1	812							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	186	387	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178948136	178948136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	219	309	0	ENST00000263967.3:c.2908G>A	p.Glu970Lys	p.E970K	ENST00000263967	NM_006218.2	970	Gaa/Aaa						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16259610	16259610	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	148	384	0	ENST00000375759.3:c.6875C>A	p.Ser2292Ter	p.S2292*	ENST00000375759	NM_015001.2	2292	tCa/tAa						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68842339	68842339	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	164	525	2	ENST00000261769.5:c.400G>T	p.Gly134Ter	p.G134*	ENST00000261769	NM_004360.3	134	Gga/Tga						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27092811	27092811	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	167	453	0	ENST00000324856.7:c.2834del	p.Gly945AspfsTer23	p.G945Dfs*23	ENST00000324856	NM_006015.4	944	caG/ca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0002721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			87	89	316	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0002721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			156	67	418	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga						NEWRECORD																																																																									
KMT2C	58508	MSKCC	GRCh37	7	151845391	151845391	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	105	426	0	ENST00000262189.6:c.13621C>T	p.Arg4541Ter	p.R4541*	ENST00000262189	NM_170606.2	4541	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175233	112175248	+	frameshift_variant	Frame_Shift_Del	DEL	GTCAGCTGAAGATCCT	GTCAGCTGAAGATCCT	-			P-0002721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	24	321	0	ENST00000257430.4:c.3944_3959del	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1314	agGTCAGCTGAAGATCCT/ag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			128	113	156	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519925		P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			371	160	384	0	ENST00000263967.3:c.1357G>C	p.Glu453Gln	p.E453Q	ENST00000263967	NM_006218.2	453	Gaa/Caa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151891615	151891615	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			337	182	340	0	ENST00000262189.6:c.4417C>T	p.Gln1473Ter	p.Q1473*	ENST00000262189	NM_170606.2	1473	Cag/Tag						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65304159	65304159	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			279	146	732	0	ENST00000342505.4:c.2956C>T	p.Gln986Ter	p.Q986*	ENST00000342505	NM_002227.2	986	Cag/Tag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178948160	178948160	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			311	118	207	0	ENST00000263967.3:c.2932G>C	p.Glu978Gln	p.E978Q	ENST00000263967	NM_006218.2	978	Gag/Cag						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56177399	56177399	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			363	157	302	0	ENST00000399503.3:c.2372A>G	p.Tyr791Cys	p.Y791C	ENST00000399503	NM_005921.1	791	tAt/tGt						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32187983	32187983	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			262	115	441	0	ENST00000375023.3:c.1238C>A	p.Thr413Lys	p.T413K	ENST00000375023	NM_004557.3	413	aCa/aAa						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98211469	98211469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			250	168	430	0	ENST00000331920.6:c.3686C>T	p.Thr1229Met	p.T1229M	ENST00000331920	NM_000264.3	1229	aCg/aTg						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139396271	139396271	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			212	106	455	0	ENST00000277541.6:c.5567C>G	p.Ser1856Cys	p.S1856C	ENST00000277541	NM_017617.3	1856	tCt/tGt						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139399191	139399191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			164	77	383	0	ENST00000277541.6:c.4952C>T	p.Ser1651Leu	p.S1651L	ENST00000277541	NM_017617.3	1651	tCg/tTg						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	442781	442781	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			392	233	402	0	ENST00000399788.2:c.1525C>A	p.His509Asn	p.H509N	ENST00000399788	NM_001042603.1	509	Cat/Aat						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105239673	105239673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			300	204	659	1	ENST00000349310.3:c.872C>T	p.Thr291Ile	p.T291I	ENST00000349310	NM_001014432.1	291	aCa/aTa						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91326061	91326061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			359	172	420	0	ENST00000355112.3:c.2565G>A	p.Met855Ile	p.M855I	ENST00000355112	NM_000057.2	855	atG/atA						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29562694	29562694	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			213	236	638	0	ENST00000358273.4:c.3774G>A	p.Trp1258Ter	p.W1258*	ENST00000358273	NM_001042492.2	1258	tgG/tgA						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9525048	9525048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			346	309	570	0	ENST00000353224.5:c.1837G>A	p.Glu613Lys	p.E613K	ENST00000353224	NM_177990.2	613	Gag/Aag						NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100611065	100611065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			330	126	677	0	ENST00000308731.7:c.1541C>T	p.Ser514Leu	p.S514L	ENST00000308731	NM_000061.2	514	tCa/tTa						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	173	465	0	ENST00000335508.6:c.1874G>T	p.Arg625Leu	p.R625L	ENST00000335508	NM_012433.2	625	cGt/cTt						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63411087	63411087	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	166	648	0	ENST00000330258.3:c.2080G>C	p.Asp694His	p.D694H	ENST00000330258	NM_152424.3	694	Gac/Cac						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			554	122	513	0	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			609	132	519	1	ENST00000288602.6:c.1397G>C	p.Gly466Ala	p.G466A	ENST00000288602	NM_004333.4	466	gGa/gCa						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134920482	134920482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			686	119	578	0	ENST00000398015.3:c.2297C>T	p.Ser766Phe	p.S766F	ENST00000398015	NM_004441.4	766	tCc/tTc						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180036946	180036946	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			665	117	735	0	ENST00000261937.6:c.3766G>C	p.Glu1256Gln	p.E1256Q	ENST00000261937	NM_182925.4	1256	Gag/Cag						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602806	10602806	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	100	430	0	ENST00000171111.5:c.772G>T	p.Glu258Ter	p.E258*	ENST00000171111	NM_203500.1	258	Gaa/Taa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579400	7579400	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	54	342	0	ENST00000269305.4:c.287del	p.Ser96LeufsTer27	p.S96Lfs*27	ENST00000269305	NM_001126112.2	96	tCt/tt						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76938029	76938029	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001717-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			219	210	220	1	ENST00000373344.5:c.2719C>T	p.Arg907Ter	p.R907*	ENST00000373344	NM_000489.3	907	Cga/Tga						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0003603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	46	55	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99162464	99162464	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	30	256	0	ENST00000074304.5:c.982G>C	p.Asp328His	p.D328H	ENST00000074304	NM_001134224.1	328	Gat/Cat						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187527224	187527224	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0003603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	63	240	0	ENST00000441802.2:c.10350G>T	p.Gln3450His	p.Q3450H	ENST00000441802	NM_005245.3	3450	caG/caT						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150005006	150005006	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	76	265	0	ENST00000253339.5:c.1219C>T	p.Gln407Ter	p.Q407*	ENST00000253339		407	Cag/Tag						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28891642	28891642	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	39	373	2	ENST00000282397.4:c.3379C>A	p.Pro1127Thr	p.P1127T	ENST00000282397	NM_002019.4	1127	Cct/Act						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32944600	32944600	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	143	491	1	ENST00000380152.3:c.8393C>G	p.Pro2798Arg	p.P2798R	ENST00000380152		2798	cCt/cGt						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2129108	2129108	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	66	329	0	ENST00000219476.3:c.3042C>G	p.Ser1014Arg	p.S1014R	ENST00000219476	NM_000548.3	1014	agC/agG						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9943751	9943751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	25	226	0	ENST00000330684.3:c.1190C>A	p.Ser397Tyr	p.S397Y	ENST00000330684	NM_001134407.1	397	tCc/tAc						NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50912103	50912103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	116	635	0	ENST00000440232.2:c.1837G>A	p.Ala613Thr	p.A613T	ENST00000440232	NM_002691.3	613	Gcc/Acc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27058094	27058098	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTA	AGGTA	-			P-0003603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	13	87	0	ENST00000324856.7:c.1803+1_1803+5del		p.X601_splice	ENST00000324856	NM_006015.4	601							NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151879062	151879100	+	inframe_deletion	In_Frame_Del	DEL	GTCATTATTTGTCGTGGAAGAAGAACATAAATCTCTGAC	GTCATTATTTGTCGTGGAAGAAGAACATAAATCTCTGAC	-			P-0003603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	71	241	0	ENST00000262189.6:c.5845_5883del	p.Val1949_Asp1961del	p.V1949_D1961del	ENST00000262189	NM_170606.2	1949	GTCAGAGATTTATGTTCTTCTTCCACGACAAATAATGAC/-						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32910937	32910937	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80359330		P-0003603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	129	588	0	ENST00000380152.3:c.2446del	p.Glu816LysfsTer9	p.E816Kfs*9	ENST00000380152		815	atG/at						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0002897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			139	38	313	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			164	44	495	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16004651	16004651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			159	41	443	0	ENST00000268712.3:c.2603C>T	p.Ala868Val	p.A868V	ENST00000268712	NM_006311.3	868	gCc/gTc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0001287-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			479	61	195	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27105955	27105955	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001287-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			188	93	162	1	ENST00000324856.7:c.5566C>T	p.Gln1856Ter	p.Q1856*	ENST00000324856	NM_006015.4	1856	Cag/Tag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0001287-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			242	113	157	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108206599	108206599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001287-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			620	199	240	0	ENST00000278616.4:c.8179G>T	p.Val2727Phe	p.V2727F	ENST00000278616	NM_000051.3	2727	Gtc/Ttc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604789	48604789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001287-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			469	201	318	0	ENST00000342988.3:c.1611C>G	p.Asp537Glu	p.D537E	ENST00000342988	NM_005359.5	537	gaC/gaG						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2226697	2226697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001287-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			242	35	269	0	ENST00000398665.3:c.4177G>A	p.Gly1393Ser	p.G1393S	ENST00000398665	NM_032482.2	1393	Ggc/Agc						NEWRECORD																																																																									
SOX2	6657	MSKCC	GRCh37	3	181431098	181431098	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001287-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			142	53	146	0	ENST00000325404.1:c.950del	p.Met317SerfsTer54	p.M317Sfs*54	ENST00000325404	NM_003106.3	317	aTg/ag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0004455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	83	447	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49027249	49027249	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0004455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	113	292	0	ENST00000267163.4:c.1814+2T>C		p.X605_splice	ENST00000267163	NM_000321.2	605							NEWRECORD																																																																									
MCL1	4170	MSKCC	GRCh37	1	150551984	150551984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	91	387	0	ENST00000369026.2:c.23C>T	p.Ala8Val	p.A8V	ENST00000369026	NM_021960.4	8	gCg/gTg						NEWRECORD																																																																									
CDKN1A	1026	MSKCC	GRCh37	6	36652074	36652074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	74	408	0	ENST00000244741.5:c.196G>A	p.Glu66Lys	p.E66K	ENST00000244741	NM_000389.4	66	Gag/Aag						NEWRECORD																																																																									
PRDM1	639	MSKCC	GRCh37	6	106553290	106553290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	87	359	0	ENST00000369096.4:c.1255G>A	p.Gly419Ser	p.G419S	ENST00000369096	NM_001198.3	419	Ggc/Agc						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70404908	70404908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	105	391	1	ENST00000373644.4:c.2422G>T	p.Ala808Ser	p.A808S	ENST00000373644	NM_030625.2	808	Gct/Tct						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212530126	212530126	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	97	439	0	ENST00000342788.4:c.1793del	p.Gln598ArgfsTer55	p.Q598Rfs*55	ENST00000342788	NM_005235.2	598	cAg/cg						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152265528	152265533	+	inframe_deletion	In_Frame_Del	DEL	CTATTC	CTATTC	-			P-0004455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	78	296	0	ENST00000206249.3:c.982_987del	p.Tyr328_Ser329del	p.Y328_S329del	ENST00000206249	NM_000125.3	327	ctCTATTCc/ctc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	55	169	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	291	407	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11174416	11174416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	118	410	2	ENST00000361445.4:c.7259C>T	p.Ala2420Val	p.A2420V	ENST00000361445	NM_004958.3	2420	gCc/gTc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173995	112173995	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	199	310	0	ENST00000257430.4:c.2704G>T	p.Glu902Ter	p.E902*	ENST00000257430	NM_000038.5	902	Gaa/Taa						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128851976	128851976	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	90	298	0	ENST00000249373.3:c.2048G>T	p.Cys683Phe	p.C683F	ENST00000249373	NM_005631.4	683	tGc/tTc						NEWRECORD																																																																									
MYC	4609	MSKCC	GRCh37	8	128751263	128751263	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0003254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	125	132	0	ENST00000377970.2:c.800C>A	p.Ser267Tyr	p.S267Y	ENST00000377970	NM_002467.4	267	tCt/tAt						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133759979	133759979	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	236	409	0	ENST00000318560.5:c.2302G>C	p.Gly768Arg	p.G768R	ENST00000318560	NM_005157.4	768	Ggg/Cgg						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114711350	114711350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	69	230	0	ENST00000543371.1:c.365C>T	p.Ser122Leu	p.S122L	ENST00000543371	NM_001198531.1	122	tCg/tTg						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5225773	5225773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	122	317	0	ENST00000357368.4:c.2459G>A	p.Arg820His	p.R820H	ENST00000357368	NM_002850.3	820	cGc/cAc						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17954290	17954290	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	237	347	0	ENST00000458235.1:c.319C>A	p.Pro107Thr	p.P107T	ENST00000458235	NM_000215.3	107	Ccc/Acc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174909	112174909	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	193	392	0	ENST00000257430.4:c.3618del	p.Ser1206ArgfsTer59	p.S1206Rfs*59	ENST00000257430	NM_000038.5	1206	agT/ag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0002837-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			530	168	473	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156837925	156837925	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002837-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			532	194	411	2	ENST00000524377.1:c.458C>A	p.Ser153Tyr	p.S153Y	ENST00000524377	NM_002529.3	153	tCt/tAt						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55124948	55124948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002837-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			689	197	532	0	ENST00000257290.5:c.13C>T	p.His5Tyr	p.H5Y	ENST00000257290	NM_006206.4	5	Cat/Tat						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50455153	50455154	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0002837-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			379	96	238	0	ENST00000331340.3:c.700_701delinsTT	p.Gly234Phe	p.G234F	ENST00000331340	NM_006060.4	234	GGc/TTc						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81346571	81346571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002837-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			716	184	473	0	ENST00000222390.5:c.1382G>T	p.Trp461Leu	p.W461L	ENST00000222390	NM_000601.4	461	tGg/tTg						NEWRECORD																																																																									
EZH2	2146	MSKCC	GRCh37	7	148524287	148524287	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002837-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			660	143	431	0	ENST00000320356.2:c.697G>T	p.Asp233Tyr	p.D233Y	ENST00000320356	NM_004456.4	233	Gat/Tat						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857758	9857758	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002837-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	167	506	0	ENST00000330684.3:c.3643A>G	p.Arg1215Gly	p.R1215G	ENST00000330684	NM_001134407.1	1215	Aga/Gga						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220391	1220395	+	missense_variant	Missense_Mutation	ONP	GACGG	GACGG	TACTT			P-0002837-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	123	402	2	ENST00000326873.7:c.484_488delinsTACTT	p.Asp162_Gly163delinsTyrPhe	p.D162_G163delinsYF	ENST00000326873	NM_000455.4	162	GACGGc/TACTTc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398280	25398281	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0002837-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			742	172	362	2	ENST00000256078.4:c.38_39delinsAA	p.Gly13Glu	p.G13E	ENST00000256078	NM_033360.2	13	gGC/gAA						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8100304	8100304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001474-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	329	596	0	ENST00000346208.3:c.278C>T	p.Ser93Phe	p.S93F	ENST00000346208		93	tCc/tTc						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108204684	108204684	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001474-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			49	79	292	0	ENST00000278616.4:c.7999A>T	p.Met2667Leu	p.M2667L	ENST00000278616	NM_000051.3	2667	Atg/Ttg						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115112505	115112524	+	frameshift_variant	Frame_Shift_Del	DEL	ACCGCGGGGCTGCCCTTGTC	ACCGCGGGGCTGCCCTTGTC	-			P-0001474-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	139	480	0	ENST00000257566.3:c.1216_1235del	p.Asp406GlnfsTer8	p.D406Qfs*8	ENST00000257566	NM_016569.3	406	GACAAGGGCAGCCCCGCGGTc/c						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0003727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			38	270	489	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
MDM4	4194	MSKCC	GRCh37	1	204507340	204507340	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	36	328	0	ENST00000367182.3:c.415A>T	p.Ser139Cys	p.S139C	ENST00000367182	NM_001278516.1	139	Agt/Tgt						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43613880	43613880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	19	326	0	ENST00000355710.3:c.2344G>A	p.Val782Ile	p.V782I	ENST00000355710	NM_020975.4	782	Gtc/Atc						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061147	38061203	+	inframe_deletion	In_Frame_Del	DEL	CCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGG	CCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGG	-			P-0004063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			22	27	28	0	ENST00000250448.2:c.786_842del	p.Gln263_Gly281del	p.Q263_G281del	ENST00000250448	NM_004496.3	262	cgCCAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGa/cga						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32911655	32911655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	68	523	0	ENST00000380152.3:c.3164del	p.Asn1055IlefsTer5	p.N1055Ifs*5	ENST00000380152		1055	Aat/at						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002234-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			285	248	496	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47163431	47163431	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0002234-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			310	178	638	0	ENST00000409792.3:c.2695A>T	p.Lys899Ter	p.K899*	ENST00000409792	NM_014159.6	899	Aaa/Taa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002234-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			543	284	459	0	ENST00000269305.4:c.321C>G	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taG						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66942785	66942785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002096-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			295	130	756	0	ENST00000374690.3:c.2566C>T	p.Arg856Cys	p.R856C	ENST00000374690	NM_000044.3	856	Cgc/Tgc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002756-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			58	54	166	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115114276	115114276	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0002756-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	123	281	0	ENST00000257566.3:c.942-1G>C		p.X314_splice	ENST00000257566	NM_016569.3	314							NEWRECORD																																																																									
VEGFA	7422	MSKCC	GRCh37	6	43745370	43745370	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	58	757	0	ENST00000523873.1:c.283G>T	p.Val95Leu	p.V95L	ENST00000523873		95	Gtg/Ttg						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2962929	2962929	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	36	484	0	ENST00000396946.4:c.1979G>T	p.Arg660Leu	p.R660L	ENST00000396946	NM_032415.4	660	cGg/cTg						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0003422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	45	280	0	ENST00000397752.3:c.3028+1G>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010							NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120468399	120468399	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000187-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			794	50	212	0	ENST00000256646.2:c.4040G>C	p.Gly1347Ala	p.G1347A	ENST00000256646	NM_024408.3	1347	gGa/gCa						NEWRECORD																																																																									
PMS1	5378	MSKCC	GRCh37	2	190718755	190718755	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000187-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			996	229	392	0	ENST00000441310.2:c.913G>C	p.Asp305His	p.D305H	ENST00000441310	NM_000534.4	305	Gat/Cat						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178917490	178917490	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000187-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			945	240	278	0	ENST00000263967.3:c.365G>C	p.Gly122Ala	p.G122A	ENST00000263967	NM_006218.2	122	gGc/gCc						NEWRECORD																																																																									
MAP2K1	5604	MSKCC	GRCh37	15	66735669	66735669	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000187-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			823	342	364	0	ENST00000307102.5:c.490C>G	p.Gln164Glu	p.Q164E	ENST00000307102	NM_002755.3	164	Caa/Gaa						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23625382	23625382	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000187-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			908	237	395	0	ENST00000261584.4:c.3144G>C	p.Lys1048Asn	p.K1048N	ENST00000261584	NM_024675.3	1048	aaG/aaC						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577560	7577560	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000187-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	292	280	1	ENST00000269305.4:c.721delT	p.Ser241ProfsTer6	p.S241Pfs*6	ENST00000269305	NM_001126112.2	241	Tcc/cc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002631-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	70	661	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212652869	212652869	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002631-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	49	540	0	ENST00000342788.4:c.437G>T	p.Gly146Val	p.G146V	ENST00000342788	NM_005235.2	146	gGa/gTa						NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35867443	35867443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002631-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	83	540	0	ENST00000303115.3:c.257G>A	p.Arg86Lys	p.R86K	ENST00000303115	NM_002185.3	86	aGg/aAg						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139399488	139399488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002631-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			507	71	459	0	ENST00000277541.6:c.4655C>A	p.Ala1552Glu	p.A1552E	ENST00000277541	NM_017617.3	1552	gCg/gAg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591924	48591924	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002631-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	89	664	0	ENST00000342988.3:c.1087T>C	p.Cys363Arg	p.C363R	ENST00000342988	NM_005359.5	363	Tgt/Cgt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600530	10600530	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0002631-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	82	492	0	ENST00000171111.5:c.1326-1G>A		p.X442_splice	ENST00000171111	NM_203500.1	442							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	40	342	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PPM1D	8493	MSKCC	GRCh37	17	58740518	58740518	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	67	687	0	ENST00000305921.3:c.1423G>T	p.Glu475Ter	p.E475*	ENST00000305921	NM_003620.3	475	Gaa/Taa						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70344023	70344023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	41	342	0	ENST00000374080.3:c.1759G>A	p.Glu587Lys	p.E587K	ENST00000374080		587	Gag/Aag						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412033	116412050	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTCCAGAAGGTATATT	TTTTCCAGAAGGTATATT	-			P-0004655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	23	316	0	ENST00000397752.3:c.3019_3028+8del		p.X1007_splice	ENST00000397752	NM_000245.2	1007							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1045	29	529	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			779	47	390	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc						NEWRECORD																																																																									
MAX	4149	MSKCC	GRCh37	14	65544755	65544755	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0002989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			668	59	315	0	ENST00000358664.4:c.172-1G>T		p.X58_splice	ENST00000358664	NM_002382.4	58							NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67591135	67591137	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0002989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			695	290	348	0	ENST00000274335.5:c.1728_1730delGAG	p.Arg577del	p.R577del	ENST00000274335		576	acGAGa/aca						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66535442	66535442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	209	86	0	ENST00000273854.3:c.19C>T	p.Arg7Trp	p.R7W	ENST00000273854	NM_004439.5	7	Cgg/Tgg						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106509978	106509978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	216	286	0	ENST00000359195.3:c.1972C>T	p.His658Tyr	p.H658Y	ENST00000359195	NM_002649.2	658	Cat/Tat						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151835937	151835937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	341	394	0	ENST00000262189.6:c.14587G>A	p.Glu4863Lys	p.E4863K	ENST00000262189	NM_170606.2	4863	Gag/Aag						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46244298	46244298	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	257	326	0	ENST00000334344.6:c.2392C>T	p.Gln798Ter	p.Q798*	ENST00000334344	NM_152641.2	798	Cag/Tag						NEWRECORD																																																																									
SH2B3	10019	MSKCC	GRCh37	12	111856445	111856445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	323	140	0	ENST00000341259.2:c.496C>T	p.Pro166Ser	p.P166S	ENST00000341259	NM_005475.2	166	Ccc/Tcc						NEWRECORD																																																																									
SH2B3	10019	MSKCC	GRCh37	12	111856464	111856464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	345	151	0	ENST00000341259.2:c.515C>A	p.Thr172Asn	p.T172N	ENST00000341259	NM_005475.2	172	aCc/aAc						NEWRECORD																																																																									
CD79B	974	MSKCC	GRCh37	17	62009584	62009584	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	417	297	0	ENST00000392795.3:c.38G>A	p.Trp13Ter	p.W13*	ENST00000392795	NM_001039933.1	13	tGg/tAg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	20	86	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac						NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45007620	45007620	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs111947448		P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	34	144	0	ENST00000558401.1:c.68-1G>T		p.X23_splice	ENST00000558401	NM_004048.2	23							NEWRECORD																																																																									
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	50	373	1	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg						NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	50	276	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	22	159	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118343697	118343697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	45	242	0	ENST00000534358.1:c.1823G>A	p.Arg608Gln	p.R608Q	ENST00000534358	NM_005933.3	608	cGa/cAa						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99454555	99454555	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61740877		P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	45	223	0	ENST00000268035.6:c.1474G>A	p.Val492Ile	p.V492I	ENST00000268035	NM_000875.3	492	Gtc/Atc						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185183540	185183540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	35	243	0	ENST00000265026.3:c.1394C>T	p.Ala465Val	p.A465V	ENST00000265026	NM_004721.4	465	gCg/gTg						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187539018	187539018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	41	430	0	ENST00000441802.2:c.8722G>A	p.Val2908Ile	p.V2908I	ENST00000441802	NM_005245.3	2908	Gtc/Atc						NEWRECORD																																																																									
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	30	294	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115252317	115252317	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	37	357	0	ENST00000369535.4:c.323A>G	p.Asp108Gly	p.D108G	ENST00000369535	NM_002524.4	108	gAt/gGt						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41277254	41277254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	48	262	0	ENST00000349496.5:c.1723G>A	p.Gly575Arg	p.G575R	ENST00000349496	NM_001904.3	575	Gga/Aga						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142177928	142177928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	38	233	0	ENST00000350721.4:c.7375C>T	p.Arg2459Cys	p.R2459C	ENST00000350721	NM_001184.3	2459	Cgt/Tgt						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1293833	1293833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	53	267	0	ENST00000310581.5:c.1168C>T	p.Arg390Trp	p.R390W	ENST00000310581	NM_198253.2	390	Cgg/Tgg						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176562403	176562403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	30	249	0	ENST00000439151.2:c.299C>A	p.Pro100His	p.P100H	ENST00000439151	NM_022455.4	100	cCt/cAt						NEWRECORD																																																																									
DAXX	1616	MSKCC	GRCh37	6	33287346	33287346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	44	325	0	ENST00000374542.5:c.1751C>T	p.Thr584Met	p.T584M	ENST00000374542	NM_001141970.1	584	aCg/aTg						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157488293	157488293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750810656		P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	34	148	0	ENST00000346085.5:c.2999C>T	p.Ala1000Val	p.A1000V	ENST00000346085	NM_020732.3	1000	gCg/gTg						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41729727	41729727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	64	434	0	ENST00000242208.4:c.802G>A	p.Glu268Lys	p.E268K	ENST00000242208	NM_002192.2	268	Gaa/Aaa						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50468032	50468032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	59	257	0	ENST00000331340.3:c.1267C>T	p.Arg423Cys	p.R423C	ENST00000331340	NM_006060.4	423	Cgc/Tgc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151856027	151856027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	45	389	0	ENST00000262189.6:c.11591G>A	p.Arg3864His	p.R3864H	ENST00000262189	NM_170606.2	3864	cGc/cAc						NEWRECORD																																																																									
XRCC2	7516	MSKCC	GRCh37	7	152346031	152346031	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	53	461	0	ENST00000359321.1:c.539T>C	p.Leu180Ser	p.L180S	ENST00000359321	NM_005431.1	180	tTa/tCa						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87563405	87563405	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147652140		P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	48	226	0	ENST00000277120.3:c.1793G>A	p.Arg598His	p.R598H	ENST00000277120		598	cGc/cAc						NEWRECORD																																																																									
SYK	6850	MSKCC	GRCh37	9	93606304	93606304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	62	277	0	ENST00000375746.1:c.124C>T	p.Arg42Cys	p.R42C	ENST00000375746	NM_001174167.1	42	Cgc/Tgc						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135787731	135787731	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151309813		P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	38	323	2	ENST00000298552.3:c.851G>A	p.Arg284His	p.R284H	ENST00000298552	NM_001162426.1	284	cGc/cAc						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115907	8115907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	55	198	0	ENST00000346208.3:c.1253C>T	p.Thr418Met	p.T418M	ENST00000346208		418	aCg/aTg						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118369241	118369241	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	40	176	0	ENST00000534358.1:c.5959G>A	p.Glu1987Lys	p.E1987K	ENST00000534358	NM_005933.3	1987	Gaa/Aaa						NEWRECORD																																																																									
ETV6	2120	MSKCC	GRCh37	12	11905391	11905391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	51	224	1	ENST00000396373.4:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000396373	NM_001987.4	14	cGa/cAa						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56489582	56489582	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56387488		P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	26	189	0	ENST00000267101.3:c.2047C>T	p.Arg683Trp	p.R683W	ENST00000267101	NM_001982.3	683	Cgg/Tgg						NEWRECORD																																																																									
IGF1	3479	MSKCC	GRCh37	12	102813307	102813307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	48	242	0	ENST00000307046.8:c.382G>A	p.Asp128Asn	p.D128N	ENST00000307046	NM_001111285.1	128	Gac/Aac						NEWRECORD																																																																									
HNF1A	6927	MSKCC	GRCh37	12	121426776	121426776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	79	366	1	ENST00000257555.6:c.467C>T	p.Thr156Met	p.T156M	ENST00000257555		156	aCg/aTg						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73337731	73337731	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	36	292	0	ENST00000377767.4:c.1985T>C	p.Met662Thr	p.M662T	ENST00000377767	NM_014953.3	662	aTg/aCg						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110434592	110434592	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	46	171	2	ENST00000375856.3:c.3809C>A	p.Pro1270Gln	p.P1270Q	ENST00000375856	NM_003749.2	1270	cCg/cAg						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110434745	110434745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	41	264	0	ENST00000375856.3:c.3656C>T	p.Pro1219Leu	p.P1219L	ENST00000375856	NM_003749.2	1219	cCg/cTg						NEWRECORD																																																																									
NFKBIA	4792	MSKCC	GRCh37	14	35872045	35872045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	66	402	0	ENST00000216797.5:c.568G>A	p.Ala190Thr	p.A190T	ENST00000216797	NM_020529.2	190	Gcc/Acc						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23634318	23634318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	47	385	0	ENST00000261584.4:c.2968G>A	p.Glu990Lys	p.E990K	ENST00000261584	NM_024675.3	990	Gaa/Aaa						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67662394	67662394	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	60	326	0	ENST00000264010.4:c.1640A>G	p.Asp547Gly	p.D547G	ENST00000264010	NM_006565.3	547	gAc/gGc						NEWRECORD																																																																									
STAT5B	6777	MSKCC	GRCh37	17	40376843	40376843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	65	538	0	ENST00000293328.3:c.329G>A	p.Arg110His	p.R110H	ENST00000293328	NM_012448.3	110	cGc/cAc						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56436149	56436149	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	60	317	0	ENST00000407977.2:c.988C>T	p.Arg330Ter	p.R330*	ENST00000407977		330	Cga/Tga						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63530162	63530162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	61	341	2	ENST00000307078.5:c.2273C>T	p.Ala758Val	p.A758V	ENST00000307078	NM_004655.3	758	gCg/gTg						NEWRECORD																																																																									
TCF3	6929	MSKCC	GRCh37	19	1611735	1611735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	67	366	1	ENST00000344749.5:c.1927G>A	p.Glu643Lys	p.E643K	ENST00000344749	NM_001136139.2	643	Gaa/Aaa						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11141492	11141492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	69	311	1	ENST00000344626.4:c.3469C>T	p.Arg1157Trp	p.R1157W	ENST00000344626	NM_003072.3	1157	Cgg/Tgg						NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50905495	50905495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774030917		P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	59	360	1	ENST00000440232.2:c.623C>T	p.Pro208Leu	p.P208L	ENST00000440232	NM_002691.3	208	cCg/cTg						NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52716039	52716039	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	57	326	0	ENST00000322088.6:c.604A>G	p.Lys202Glu	p.K202E	ENST00000322088	NM_014225.5	202	Aag/Gag						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36164469	36164469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	35	101	0	ENST00000300305.3:c.1406C>T	p.Ser469Phe	p.S469F	ENST00000300305		469	tCc/tTc						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53225926	53225926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	59	334	0	ENST00000375401.3:c.2923G>A	p.Glu975Lys	p.E975K	ENST00000375401	NM_004187.3	975	Gaa/Aaa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	179	461	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52440384	52440384	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	29	216	0	ENST00000460680.1:c.668A>T	p.Tyr223Phe	p.Y223F	ENST00000460680	NM_004656.3	223	tAc/tTc						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89391162	89391162	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	62	368	0	ENST00000336596.2:c.1228G>T	p.Asp410Tyr	p.D410Y	ENST00000336596	NM_005233.5	410	Gat/Tat						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187538936	187538936	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	67	535	0	ENST00000441802.2:c.8804G>C	p.Gly2935Ala	p.G2935A	ENST00000441802	NM_005245.3	2935	gGg/gCg						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41729881	41729881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	86	719	0	ENST00000242208.4:c.648C>A	p.Ser216Arg	p.S216R	ENST00000242208	NM_002192.2	216	agC/agA						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46230734	46230734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	29	461	0	ENST00000334344.6:c.983G>T	p.Arg328Met	p.R328M	ENST00000334344	NM_152641.2	328	aGg/aTg						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39934087	39934087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	25	503	0	ENST00000378444.4:c.512C>A	p.Pro171His	p.P171H	ENST00000378444	NM_001123385.1	171	cCt/cAt						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47038563	47038563	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0003584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	68	509	0	ENST00000329236.7:c.493+1G>T		p.X165_splice	ENST00000329236	NM_001204466.1	165							NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63410226	63410226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	32	435	0	ENST00000330258.3:c.2941G>A	p.Asp981Asn	p.D981N	ENST00000330258	NM_152424.3	981	Gac/Aac						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66766532	66766532	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	79	626	0	ENST00000374690.3:c.1544C>A	p.Pro515His	p.P515H	ENST00000374690	NM_000044.3	515	cCc/cAc						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29588875	29588876	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0003584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	60	412	0	ENST00000358273.4:c.4724_4724+1delinsTT		p.X1575_splice	ENST00000358273	NM_001042492.2	1575							NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76937694	76937694	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001149-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			872	208	700	0	ENST00000373344.5:c.3054G>T	p.Lys1018Asn	p.K1018N	ENST00000373344	NM_000489.3	1018	aaG/aaT						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56189396	56189396	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001149-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			678	110	411	0	ENST00000399503.3:c.4430del	p.Leu1477CysfsTer13	p.L1477Cfs*13	ENST00000399503	NM_005921.1	1476	caT/ca						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115839	8115843	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCT	CCTCT	-			P-0001149-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			632	138	491	0	ENST00000346208.3:c.1187_1191del	p.Leu396GlnfsTer109	p.L396Qfs*109	ENST00000346208		395	gcCCTCTcc/gccc						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56178163	56178169	+	stop_gained,protein_altering_variant	Nonsense_Mutation	DEL	TTTACTC	TTTACTC	GAGT			P-0001149-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			632	75	349	0	ENST00000399503.3:c.3136_3142delinsGAGT	p.Phe1046_Gln1048delinsGluTer	p.F1046_Q1048delinsE*	ENST00000399503	NM_005921.1	1046	TTTACTCag/GAGTag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003475-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	197	371	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0003475-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	159	313	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307							NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0003475-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	116	378	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3790494	3790494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003475-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	64	370	2	ENST00000262367.5:c.4039C>T	p.Arg1347Trp	p.R1347W	ENST00000262367	NM_004380.2	1347	Cgg/Tgg						NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56871638	56871638	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs199837299		P-0003475-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	99	298	0	ENST00000308159.5:c.2018G>A	p.Arg673Gln	p.R673Q	ENST00000308159	NM_014669.4	673	cGg/cAg						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70119774	70119774	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0003475-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	248	372	0	ENST00000245479.2:c.776T>A	p.Leu259Ter	p.L259*	ENST00000245479	NM_000346.3	259	tTg/tAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003475-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	146	224	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca						NEWRECORD																																																																									
HIST1H3B	8358	MSKCC	GRCh37	6	26032210	26032210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	286	274	0	ENST00000244661.2:c.79C>T	p.Arg27Cys	p.R27C	ENST00000244661	NM_003537.3	27	Cgc/Tgc						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5044488	5044488	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	313	396	0	ENST00000381652.3:c.436G>C	p.Asp146His	p.D146H	ENST00000381652	NM_004972.3	146	Gat/Cat						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	778	334	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0003531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	185	260	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa						NEWRECORD																																																																									
PPM1D	8493	MSKCC	GRCh37	17	58677993	58677993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	205	155	0	ENST00000305921.3:c.218G>A	p.Arg73Gln	p.R73Q	ENST00000305921	NM_003620.3	73	cGa/cAa						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47162552	47162552	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	212	227	0	ENST00000409792.3:c.3574del	p.Ala1192ProfsTer44	p.A1192Pfs*44	ENST00000409792	NM_014159.6	1192	Gcc/cc						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47044978	47044978	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001840-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			741	357	367	0	ENST00000329236.7:c.2073del	p.Ser692AlafsTer32	p.S692Afs*32	ENST00000329236	NM_001204466.1	690	ttC/tt						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0002547-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			596	307	514	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0002547-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			403	293	338	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0002547-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			467	141	305	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga						NEWRECORD																																																																									
MYD88	4615	MSKCC	GRCh37	3	38180207	38180207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002547-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			609	138	431	0	ENST00000396334.3:c.55C>T	p.Pro19Ser	p.P19S	ENST00000396334	NM_002468.4	19	Ccc/Tcc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002547-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			998	84	527	1	ENST00000269305.4:c.808T>C	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	Ttt/Ctt						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40747079	40747079	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002547-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1535	144	459	0	ENST00000373198.4:c.3003C>G	p.Ser1001Arg	p.S1001R	ENST00000373198	NM_133170.3	1001	agC/agG						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40735470	40735470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	57	337	0	ENST00000373198.4:c.3403G>A	p.Val1135Met	p.V1135M	ENST00000373198	NM_133170.3	1135	Gtg/Atg						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139410051	139410051	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61755997		P-0003195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	48	310	2	ENST00000277541.6:c.1787C>T	p.Thr596Met	p.T596M	ENST00000277541	NM_017617.3	596	aCg/aTg						NEWRECORD																																																																									
FGF3	2248	MSKCC	GRCh37	11	69625269	69625269	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	30	360	0	ENST00000334134.2:c.524C>A	p.Ser175Tyr	p.S175Y	ENST00000334134	NM_005247.2	175	tCc/tAc						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11106910	11106910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	33	280	0	ENST00000344626.4:c.1615C>T	p.Arg539Cys	p.R539C	ENST00000344626	NM_003072.3	539	Cgc/Tgc						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70343453	70343453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	30	361	0	ENST00000374080.3:c.1627G>A	p.Glu543Lys	p.E543K	ENST00000374080		543	Gaa/Aaa						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32911686	32911686	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	115	463	0	ENST00000380152.3:c.3195del	p.Asn1066IlefsTer11	p.N1066Ifs*11	ENST00000380152		1065	aTt/at						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16097831	16097837	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTGTT	CTTTGTT	-			P-0003195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	64	223	0	ENST00000268712.3:c.47_53del	p.Glu16ValfsTer33	p.E16Vfs*33	ENST00000268712	NM_006311.3	16	gAACAAAGt/gt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			554	162	155	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	1032	583	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11181344	11181344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			770	418	408	0	ENST00000361445.4:c.6892G>C	p.Asp2298His	p.D2298H	ENST00000361445	NM_004958.3	2298	Gac/Cac						NEWRECORD																																																																									
JUN	3725	MSKCC	GRCh37	1	59248163	59248163	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			43	29	23	0	ENST00000371222.2:c.580G>T	p.Gly194Cys	p.G194C	ENST00000371222	NM_002228.3	194	Ggc/Tgc						NEWRECORD																																																																									
RFWD2	64326	MSKCC	GRCh37	1	175958588	175958588	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1035	436	385	0	ENST00000367669.3:c.1757G>C	p.Arg586Pro	p.R586P	ENST00000367669	NM_022457.5	586	cGt/cCt						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29456439	29456439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1034	336	756	0	ENST00000389048.3:c.2479G>T	p.Val827Leu	p.V827L	ENST00000389048	NM_004304.4	827	Gta/Tta						NEWRECORD																																																																									
MSH2	4436	MSKCC	GRCh37	2	47635588	47635588	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	447	400	0	ENST00000233146.2:c.260C>G	p.Ser87Cys	p.S87C	ENST00000233146	NM_000251.2	87	tCt/tGt						NEWRECORD																																																																									
MSH2	4436	MSKCC	GRCh37	2	47637440	47637440	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			392	473	388	0	ENST00000233146.2:c.574A>T	p.Ile192Phe	p.I192F	ENST00000233146	NM_000251.2	192	Atc/Ttc						NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48026875	48026875	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			827	257	593	0	ENST00000234420.5:c.1753C>G	p.Leu585Val	p.L585V	ENST00000234420	NM_000179.2	585	Cta/Gta						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99193486	99193486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			578	832	548	0	ENST00000074304.5:c.2681G>T	p.Ser894Ile	p.S894I	ENST00000074304	NM_001134224.1	894	aGc/aTc						NEWRECORD																																																																									
PMS1	5378	MSKCC	GRCh37	2	190728705	190728705	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			790	631	334	0	ENST00000441310.2:c.2093A>T	p.Gln698Leu	p.Q698L	ENST00000441310	NM_000534.4	698	cAg/cTg						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212615412	212615412	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			892	189	411	0	ENST00000342788.4:c.574T>A	p.Ser192Thr	p.S192T	ENST00000342788	NM_005235.2	192	Tcc/Acc						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215593707	215593707	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			549	118	237	0	ENST00000260947.4:c.2027A>T	p.Tyr676Phe	p.Y676F	ENST00000260947	NM_000465.2	676	tAc/tTc						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47162197	47162197	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			879	293	366	0	ENST00000409792.3:c.3929C>G	p.Ser1310Ter	p.S1310*	ENST00000409792	NM_014159.6	1310	tCa/tGa						NEWRECORD																																																																									
RYBP	23429	MSKCC	GRCh37	3	72428190	72428190	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			764	423	370	0	ENST00000477973.2:c.699+1G>T		p.X233_splice	ENST00000477973	NM_012234.5	233							NEWRECORD																																																																									
FOXL2	668	MSKCC	GRCh37	3	138664847	138664847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			30	45	22	0	ENST00000330315.3:c.718G>A	p.Gly240Ser	p.G240S	ENST00000330315	NM_023067.3	240	Ggc/Agc						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185167804	185167804	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1440	557	476	0	ENST00000265026.3:c.1127C>G	p.Ser376Cys	p.S376C	ENST00000265026	NM_004721.4	376	tCc/tGc						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66201810	66201810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			588	222	375	0	ENST00000273854.3:c.2692C>T	p.Pro898Ser	p.P898S	ENST00000273854	NM_004439.5	898	Cca/Tca						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66201827	66201827	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	328	338	0	ENST00000273854.3:c.2675A>T	p.Glu892Val	p.E892V	ENST00000273854	NM_004439.5	892	gAg/gTg						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66467953	66467953	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			637	227	408	0	ENST00000273854.3:c.316G>T	p.Glu106Ter	p.E106*	ENST00000273854	NM_004439.5	106	Gaa/Taa						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143352410	143352410	+	start_lost	Translation_Start_Site	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			487	536	453	0	ENST00000262992.4:c.3G>T	p.Met1?	p.M1?	ENST00000262992	NM_001101669.1	1	atG/atT						NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35876524	35876524	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1449	379	268	0	ENST00000303115.3:c.1316C>A	p.Thr439Asn	p.T439N	ENST00000303115	NM_002185.3	439	aCt/aAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112177106	112177106	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	800	458	0	ENST00000257430.4:c.5815G>C	p.Asp1939His	p.D1939H	ENST00000257430	NM_000038.5	1939	Gac/Cac						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149512446	149512446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	571	367	0	ENST00000261799.4:c.994C>T	p.Arg332Trp	p.R332W	ENST00000261799	NM_002609.3	332	Cgg/Tgg						NEWRECORD																																																																									
FGFR4	2264	MSKCC	GRCh37	5	176523702	176523702	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	747	595	0	ENST00000292408.4:c.2113G>T	p.Gly705Ter	p.G705*	ENST00000292408	NM_213647.1	705	Gga/Tga						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30671949	30671949	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			809	559	521	1	ENST00000376406.3:c.5011A>C	p.Thr1671Pro	p.T1671P	ENST00000376406	NM_014641.2	1671	Acc/Ccc						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32170060	32170060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			777	540	532	0	ENST00000375023.3:c.3548G>T	p.Gly1183Val	p.G1183V	ENST00000375023	NM_004557.3	1183	gGa/gTa						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117704623	117704623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			820	574	424	1	ENST00000368508.3:c.2353G>T	p.Val785Leu	p.V785L	ENST00000368508	NM_002944.2	785	Gtg/Ttg						NEWRECORD																																																																									
IFNGR1	3459	MSKCC	GRCh37	6	137522064	137522064	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			864	214	268	0	ENST00000367739.4:c.815A>C	p.Lys272Thr	p.K272T	ENST00000367739	NM_000416.2	272	aAa/aCa						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2983870	2983870	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1102	509	601	0	ENST00000396946.4:c.660G>C	p.Met220Ile	p.M220I	ENST00000396946	NM_032415.4	220	atG/atC						NEWRECORD																																																																									
ETV1	2115	MSKCC	GRCh37	7	13971366	13971366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			600	118	223	0	ENST00000405192.2:c.563G>C	p.Arg188Pro	p.R188P	ENST00000405192	NM_001163147.1	188	cGc/cCc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55233096	55233096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			583	302	247	0	ENST00000275493.2:c.1846G>T	p.Val616Leu	p.V616L	ENST00000275493	NM_005228.3	616	Gtg/Ttg						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140534411	140534411	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			641	1116	320	1	ENST00000288602.6:c.502G>T	p.Val168Leu	p.V168L	ENST00000288602	NM_004333.4	168	Gtg/Ttg						NEWRECORD																																																																									
EZH2	2146	MSKCC	GRCh37	7	148507438	148507438	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1912	228	415	0	ENST00000320356.2:c.2016C>G	p.Phe672Leu	p.F672L	ENST00000320356	NM_004456.4	672	ttC/ttG						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151860506	151860506	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1959	511	477	0	ENST00000262189.6:c.10156G>C	p.Asp3386His	p.D3386H	ENST00000262189	NM_170606.2	3386	Gat/Cat						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151871215	151871215	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1151	790	355	0	ENST00000262189.6:c.9374+1G>C		p.X3125_splice	ENST00000262189	NM_170606.2	3125							NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151932996	151932996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			491	46	74	0	ENST00000262189.6:c.2675G>A	p.Gly892Glu	p.G892E	ENST00000262189	NM_170606.2	892	gGa/gAa						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5054592	5054592	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	506	218	0	ENST00000381652.3:c.644G>T	p.Arg215Leu	p.R215L	ENST00000381652	NM_004972.3	215	cGa/cTa						NEWRECORD																																																																									
CD274	29126	MSKCC	GRCh37	9	5463097	5463097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			144	527	202	0	ENST00000381577.3:c.658C>T	p.His220Tyr	p.H220Y	ENST00000381577	NM_014143.3	220	Cat/Tat						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8341725	8341725	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			280	945	571	1	ENST00000356435.5:c.4915G>T	p.Glu1639Ter	p.E1639*	ENST00000356435		1639	Gag/Tag						NEWRECORD																																																																									
BMPR1A	657	MSKCC	GRCh37	10	88635778	88635778	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			413	95	207	0	ENST00000372037.3:c.3G>T	p.Met1?	p.M1?	ENST00000372037	NM_004329.2	1	atG/atT						NEWRECORD																																																																									
SDHAF2	54949	MSKCC	GRCh37	11	61197647	61197647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1356	296	650	1	ENST00000301761.2:c.29C>T	p.Ser10Leu	p.S10L	ENST00000301761	NM_017841.2	10	tCg/tTg						NEWRECORD																																																																									
RPS6KA4	8986	MSKCC	GRCh37	11	64136949	64136949	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	187	162	0	ENST00000334205.4:c.1460G>T	p.Arg487Leu	p.R487L	ENST00000334205	NM_003942.2	487	cGg/cTg						NEWRECORD																																																																									
RPS6KA4	8986	MSKCC	GRCh37	11	64137699	64137699	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			985	511	612	0	ENST00000334205.4:c.1800C>A	p.Tyr600Ter	p.Y600*	ENST00000334205	NM_003942.2	600	taC/taA						NEWRECORD																																																																									
RPS6KB2	6199	MSKCC	GRCh37	11	67198974	67198974	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			922	178	317	0	ENST00000312629.5:c.445G>C	p.Glu149Gln	p.E149Q	ENST00000312629	NM_003952.2	149	Gag/Cag						NEWRECORD																																																																									
PAK1	5058	MSKCC	GRCh37	11	77054940	77054940	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1164	561	617	0	ENST00000356341.3:c.922A>G	p.Lys308Glu	p.K308E	ENST00000356341	NM_002576.4	308	Aag/Gag						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108165748	108165748	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1214	251	401	0	ENST00000278616.4:c.4871A>T	p.His1624Leu	p.H1624L	ENST00000278616	NM_000051.3	1624	cAt/cTt						NEWRECORD																																																																									
CBL	867	MSKCC	GRCh37	11	119146835	119146835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			878	428	420	0	ENST00000264033.4:c.998G>T	p.Arg333Met	p.R333M	ENST00000264033	NM_005188.3	333	aGg/aTg						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18443917	18443917	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1305	242	476	0	ENST00000266497.5:c.890C>G	p.Ser297Ter	p.S297*	ENST00000266497		297	tCa/tGa						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46205332	46205332	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			675	323	342	0	ENST00000334344.6:c.416C>T	p.Ser139Leu	p.S139L	ENST00000334344	NM_152641.2	139	tCg/tTg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49432551	49432551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	873	429	0	ENST00000301067.7:c.8588G>T	p.Gly2863Val	p.G2863V	ENST00000301067	NM_003482.3	2863	gGc/gTc						NEWRECORD																																																																									
CDK4	1019	MSKCC	GRCh37	12	58144442	58144442	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			694	273	217	0	ENST00000257904.6:c.629G>C	p.Arg210Pro	p.R210P	ENST00000257904	NM_000075.3	210	cGa/cCa						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133249764	133249764	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			546	193	343	2	ENST00000320574.5:c.1459A>G	p.Met487Val	p.M487V	ENST00000320574	NM_006231.2	487	Atg/Gtg						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21562717	21562717	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			81	109	62	0	ENST00000382592.4:c.1202C>A	p.Pro401Gln	p.P401Q	ENST00000382592	NM_014572.2	401	cCa/cAa						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48955473	48955473	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1173	240	417	2	ENST00000267163.4:c.1589A>T	p.Lys530Ile	p.K530I	ENST00000267163	NM_000321.2	530	aAa/aTa						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49033875	49033875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1206	468	487	0	ENST00000267163.4:c.2012C>T	p.Ser671Phe	p.S671F	ENST00000267163	NM_000321.2	671	tCt/tTt						NEWRECORD																																																																									
RAD51B	5890	MSKCC	GRCh37	14	68301819	68301819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			608	452	471	0	ENST00000487270.1:c.221G>T	p.Arg74Met	p.R74M	ENST00000487270	NM_133509.3	74	aGg/aTg						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88483985	88483985	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	199	326	1	ENST00000360948.2:c.1586-1G>C		p.X529_splice	ENST00000360948	NM_001012338.2	529							NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91292656	91292656	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	426	323	0	ENST00000355112.3:c.158C>G	p.Ser53Ter	p.S53*	ENST00000355112	NM_000057.2	53	tCa/tGa						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91328153	91328153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			632	238	355	0	ENST00000355112.3:c.2665G>T	p.Asp889Tyr	p.D889Y	ENST00000355112	NM_000057.2	889	Gat/Tat						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99478253	99478253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			295	120	153	0	ENST00000268035.6:c.3157G>T	p.Val1053Leu	p.V1053L	ENST00000268035	NM_000875.3	1053	Gtg/Ttg						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	341293	341293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			738	459	533	0	ENST00000262320.3:c.2191G>T	p.Val731Leu	p.V731L	ENST00000262320	NM_003502.3	731	Gtg/Ttg						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89849470	89849470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			753	472	567	0	ENST00000389301.3:c.1511G>T	p.Arg504Leu	p.R504L	ENST00000389301	NM_000135.2	504	cGc/cTc						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37866091	37866091	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			901	479	423	0	ENST00000269571.5:c.600G>T	p.Lys200Asn	p.K200N	ENST00000269571		200	aaG/aaT						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41203127	41203127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			528	307	234	0	ENST00000357654.3:c.5285G>T	p.Arg1762Met	p.R1762M	ENST00000357654	NM_007294.3	1762	aGg/aTg						NEWRECORD																																																																									
RAD51C	5889	MSKCC	GRCh37	17	56772460	56772460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1342	253	453	0	ENST00000337432.4:c.314C>T	p.Ser105Leu	p.S105L	ENST00000337432	NM_058216.2	105	tCa/tTa						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70117632	70117632	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1038	566	543	0	ENST00000245479.2:c.100C>A	p.Pro34Thr	p.P34T	ENST00000245479	NM_000346.3	34	Ccc/Acc						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70117797	70117797	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			996	529	570	0	ENST00000245479.2:c.265G>T	p.Val89Leu	p.V89L	ENST00000245479	NM_000346.3	89	Gtg/Ttg						NEWRECORD																																																																									
YES1	7525	MSKCC	GRCh37	18	724581	724581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			689	130	267	0	ENST00000314574.4:c.1475C>A	p.Pro492Gln	p.P492Q	ENST00000314574	NM_005433.3	492	cCg/cAg						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15349876	15349876	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	261	179	0	ENST00000263377.2:c.3776G>C	p.Arg1259Pro	p.R1259P	ENST00000263377	NM_058243.2	1259	cGc/cCc						NEWRECORD																																																																									
PIK3R2	5296	MSKCC	GRCh37	19	18266954	18266954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			84	37	55	0	ENST00000222254.8:c.265C>A	p.Arg89Ser	p.R89S	ENST00000222254	NM_005027.3	89	Cgc/Agc						NEWRECORD																																																																									
PIK3R2	5296	MSKCC	GRCh37	19	18279639	18279639	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			599	199	345	0	ENST00000222254.8:c.1912G>T	p.Gly638Cys	p.G638C	ENST00000222254	NM_005027.3	638	Ggc/Tgc						NEWRECORD																																																																									
CCNE1	898	MSKCC	GRCh37	19	30314572	30314572	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1084	453	583	3	ENST00000262643.3:c.1121G>T	p.Arg374Leu	p.R374L	ENST00000262643	NM_001238.2	374	cGa/cTa						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42791519	42791519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1716	260	658	0	ENST00000575354.2:c.500G>A	p.Gly167Glu	p.G167E	ENST00000575354	NM_015125.3	167	gGa/gAa						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42793127	42793127	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1351	265	465	0	ENST00000575354.2:c.1019G>T	p.Arg340Leu	p.R340L	ENST00000575354	NM_015125.3	340	cGg/cTg						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42793543	42793543	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			722	344	317	0	ENST00000575354.2:c.1345G>C	p.Asp449His	p.D449H	ENST00000575354	NM_015125.3	449	Gat/Cat						NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52715961	52715961	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			955	395	502	0	ENST00000322088.6:c.526G>C	p.Asp176His	p.D176H	ENST00000322088	NM_014225.5	176	Gat/Cat						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31023121	31023121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1434	198	399	0	ENST00000375687.4:c.2606G>T	p.Gly869Val	p.G869V	ENST00000375687	NM_015338.5	869	gGt/gTt						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31376681	31376681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			904	366	402	0	ENST00000328111.2:c.676G>T	p.Gly226Trp	p.G226W	ENST00000328111	NM_006892.3	226	Ggg/Tgg						NEWRECORD																																																																									
TOP1	7150	MSKCC	GRCh37	20	39744994	39744994	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1493	188	482	0	ENST00000361337.2:c.1784C>A	p.Ser595Tyr	p.S595Y	ENST00000361337	NM_003286.2	595	tCc/tAc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40714438	40714438	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			941	144	340	0	ENST00000373198.4:c.3959T>A	p.Val1320Glu	p.V1320E	ENST00000373198	NM_133170.3	1320	gTg/gAg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40748580	40748580	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1102	168	331	0	ENST00000373198.4:c.2936C>A	p.Thr979Asn	p.T979N	ENST00000373198	NM_133170.3	979	aCt/aAt						NEWRECORD																																																																									
AURKA	6790	MSKCC	GRCh37	20	54961363	54961363	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			694	105	186	0	ENST00000312783.6:c.269G>T	p.Arg90Met	p.R90M	ENST00000312783	NM_198436.1	90	aGg/aTg						NEWRECORD																																																																									
CHEK2	11200	MSKCC	GRCh37	22	29095918	29095918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			862	239	560	0	ENST00000328354.6:c.916G>A	p.Gly306Arg	p.G306R	ENST00000328354	NM_007194.3	306	Ggg/Agg						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53225199	53225199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	569	404	0	ENST00000375401.3:c.3019C>T	p.Arg1007Cys	p.R1007C	ENST00000375401	NM_004187.3	1007	Cgt/Tgt						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81335655	81335655	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1112	565	449	0	ENST00000222390.5:c.1705del	p.Gln569SerfsTer13	p.Q569Sfs*13	ENST00000222390	NM_000601.4	569	Cag/ag						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9858680	9858681	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	881	531	0	ENST00000330684.3:c.2720_2721delinsAT	p.Met907Asn	p.M907N	ENST00000330684	NM_001134407.1	907	aTG/aAT						NEWRECORD																																																																									
IGF2	3481	MSKCC	GRCh37	11	2161482	2161483	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			846	291	691	0	ENST00000434045.2:c.44_45delinsAG	p.Thr15Lys	p.T15K	ENST00000434045	NM_001127598.1	15	aCC/aAG						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44942724	44942726	+	missense_variant	Missense_Mutation	ONP	GAG	GAG	AAT			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			141	483	225	0	ENST00000377967.4:c.3304_3306delinsAAT	p.Glu1102Asn	p.E1102N	ENST00000377967	NM_021140.2	1102	GAG/AAT						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139391977	139391978	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			539	504	643	0	ENST00000277541.6:c.6213_6214delinsTT	p.Glu2071_Gly2072delinsAspCys	p.E2071_G2072delinsDC	ENST00000277541	NM_017617.3	2071	gaGGgc/gaTTgc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0002827-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	157	244	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0002827-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	72	251	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126							NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66766276	66766276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002827-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	43	264	1	ENST00000374690.3:c.1288G>A	p.Ala430Thr	p.A430T	ENST00000374690	NM_000044.3	430	Gcc/Acc						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30681655	30681655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002827-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			490	83	467	0	ENST00000376406.3:c.442G>A	p.Glu148Lys	p.E148K	ENST00000376406	NM_014641.2	148	Gaa/Aaa						NEWRECORD																																																																									
RAC1	5879	MSKCC	GRCh37	7	6441588	6441588	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002827-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			79	17	57	0	ENST00000356142.4:c.435C>G	p.Ile145Met	p.I145M	ENST00000356142	NM_018890.3	145	atC/atG						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001927-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			530	52	209	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag						NEWRECORD																																																																									
CDKN2C	1031	MSKCC	GRCh37	1	51439694	51439694	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001927-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			435	50	177	0	ENST00000262662.1:c.259C>T	p.Gln87Ter	p.Q87*	ENST00000262662		87	Cag/Tag						NEWRECORD																																																																									
VTCN1	79679	MSKCC	GRCh37	1	117699325	117699325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001927-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			631	35	215	0	ENST00000369458.3:c.316G>T	p.Asp106Tyr	p.D106Y	ENST00000369458	NM_024626.3	106	Gat/Tat						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43607552	43607552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001927-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	16	108	0	ENST00000355710.3:c.1528G>T	p.Ala510Ser	p.A510S	ENST00000355710	NM_020975.4	510	Gcc/Tcc						NEWRECORD																																																																									
MRE11A	4361	MSKCC	GRCh37	11	94203753	94203753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001927-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			495	27	209	0	ENST00000323929.3:c.901C>T	p.Leu301Phe	p.L301F	ENST00000323929	NM_005591.3	301	Ctt/Ttt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602290	10602290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001927-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			392	21	166	0	ENST00000171111.5:c.1288G>T	p.Gly430Cys	p.G430C	ENST00000171111	NM_203500.1	430	Ggc/Tgc						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39923724	39923724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001927-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	33	91	0	ENST00000378444.4:c.3367G>T	p.Asp1123Tyr	p.D1123Y	ENST00000378444	NM_001123385.1	1123	Gac/Tac						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47040650	47040650	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001927-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			196	31	86	0	ENST00000329236.7:c.1051G>T	p.Glu351Ter	p.E351*	ENST00000329236	NM_001204466.1	351	Gag/Tag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112170822	112170822	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1114167575		P-0002438-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			564	306	509	0	ENST00000257430.4:c.1918C>T	p.Arg640Trp	p.R640W	ENST00000257430	NM_000038.5	640	Cgg/Tgg						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149447875	149447875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002438-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			744	143	385	1	ENST00000286301.3:c.1529C>T	p.Pro510Leu	p.P510L	ENST00000286301	NM_005211.3	510	cCg/cTg						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	149983044	149983044	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002438-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			833	168	597	1	ENST00000253339.5:c.3214G>T	p.Glu1072Ter	p.E1072*	ENST00000253339		1072	Gaa/Taa						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118348715	118348715	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002438-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	155	410	0	ENST00000534358.1:c.3368A>T	p.Glu1123Val	p.E1123V	ENST00000534358	NM_005933.3	1123	gAa/gTa						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110435350	110435350	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002438-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			305	207	141	0	ENST00000375856.3:c.3051G>T	p.Leu1017Phe	p.L1017F	ENST00000375856	NM_003749.2	1017	ttG/ttT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0002438-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	246	328	2	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0004067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	189	138	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0004067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	951	255	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
MUTYH	4595	MSKCC	GRCh37	1	45798461	45798461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	548	357	0	ENST00000372115.3:c.508C>T	p.Arg170Trp	p.R170W	ENST00000372115	NM_001048171.1	170	Cgg/Tgg						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8465650	8465650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	205	276	0	ENST00000356435.5:c.3530G>T	p.Arg1177Leu	p.R1177L	ENST00000356435		1177	cGc/cTc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8486222	8486222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	367	226	0	ENST00000356435.5:c.2595G>A	p.Met865Ile	p.M865I	ENST00000356435		865	atG/atA						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18576880	18576880	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1257	174	297	0	ENST00000266497.5:c.2288C>T	p.Ala763Val	p.A763V	ENST00000266497		763	gCt/gTt						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72993789	72993789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	155	286	0	ENST00000268489.5:c.256G>T	p.Ala86Ser	p.A86S	ENST00000268489	NM_006885.3	86	Gcc/Tcc						NEWRECORD																																																																									
CRLF2	64109	MSKCC	GRCh37	X	1321324	1321324	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	183	210	0	ENST00000381566.1:c.431G>C	p.Gly144Ala	p.G144A	ENST00000381566		144	gGg/gCg						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47045025	47045025	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	266	294	0	ENST00000329236.7:c.2117A>T	p.His706Leu	p.H706L	ENST00000329236	NM_001204466.1	706	cAc/cTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0004067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	84	156	0	ENST00000269305.4:c.375+1delG		p.X125_splice	ENST00000269305	NM_001126112.2	125							NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56176973	56176973	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004121-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			663	167	348	0	ENST00000399503.3:c.2243C>G	p.Ser748Ter	p.S748*	ENST00000399503	NM_005921.1	748	tCa/tGa						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56183345	56183345	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004121-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			396	68	221	0	ENST00000399503.3:c.4255G>A	p.Glu1419Lys	p.E1419K	ENST00000399503	NM_005921.1	1419	Gag/Aag						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32163686	32163686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004121-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			237	49	200	0	ENST00000375023.3:c.5540C>T	p.Ser1847Leu	p.S1847L	ENST00000375023	NM_004557.3	1847	tCa/tTa						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243727126	243727126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002139-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1006	110	381	0	ENST00000263826.5:c.844G>A	p.Asp282Asn	p.D282N	ENST00000263826	NM_005465.4	282	Gat/Aat						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56170975	56170975	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002139-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	198	279	0	ENST00000399503.3:c.1803G>C	p.Glu601Asp	p.E601D	ENST00000399503	NM_005921.1	601	gaG/gaC						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176631163	176631163	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002139-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	394	428	0	ENST00000439151.2:c.1106T>C	p.Phe369Ser	p.F369S	ENST00000439151	NM_022455.4	369	tTt/tCt						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176631174	176631174	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002139-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	404	431	0	ENST00000439151.2:c.1117T>C	p.Ser373Pro	p.S373P	ENST00000439151	NM_022455.4	373	Tct/Cct						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151851505	151851505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002139-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	115	286	0	ENST00000262189.6:c.11986G>A	p.Asp3996Asn	p.D3996N	ENST00000262189	NM_170606.2	3996	Gat/Aat						NEWRECORD																																																																									
MDM2	4193	MSKCC	GRCh37	12	69233081	69233081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002139-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			613	134	341	0	ENST00000462284.1:c.946G>A	p.Glu316Lys	p.E316K	ENST00000462284	NM_002392.5	316	Gaa/Aaa						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48593533	48593533	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002139-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			194	175	301	0	ENST00000342988.3:c.1284G>C	p.Lys428Asn	p.K428N	ENST00000342988	NM_005359.5	428	aaG/aaC						NEWRECORD																																																																									
TRAF7	84231	MSKCC	GRCh37	16	2223973	2223973	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			691	179	522	0	ENST00000326181.6:c.1187A>G	p.Gln396Arg	p.Q396R	ENST00000326181	NM_032271.2	396	cAg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0001470-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			100	54	411	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0001470-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			50	39	321	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001470-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			60	12	161	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa						NEWRECORD																																																																									
TMEM127	55654	MSKCC	GRCh37	2	96919643	96919643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001470-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			142	40	331	0	ENST00000258439.3:c.620C>T	p.Ala207Val	p.A207V	ENST00000258439	NM_001193304.2	207	gCg/gTg						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42796955	42796955	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149948572		P-0001470-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			194	44	381	0	ENST00000575354.2:c.3413C>T	p.Pro1138Leu	p.P1138L	ENST00000575354	NM_015125.3	1138	cCg/cTg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89693009	89693009	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0001955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			53	99	184	0	ENST00000371953.3:c.492+1G>C		p.X164_splice	ENST00000371953	NM_000314.4	164							NEWRECORD																																																																									
MAP2K1	5604	MSKCC	GRCh37	15	66729180	66729180	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			143	137	424	0	ENST00000307102.5:c.388T>C	p.Tyr130His	p.Y130H	ENST00000307102	NM_002755.3	130	Tat/Cat						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49434618	49434618	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			445	260	312	0	ENST00000301067.7:c.6935C>G	p.Ser2312Ter	p.S2312*	ENST00000301067	NM_003482.3	2312	tCa/tGa						NEWRECORD																																																																									
IKBKE	9641	MSKCC	GRCh37	1	206647673	206647673	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			264	441	172	0	ENST00000367120.3:c.88-1G>A		p.X30_splice	ENST00000367120	NM_014002.3	30							NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47084189	47084189	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			119	184	202	0	ENST00000409792.3:c.7100C>T	p.Ser2367Phe	p.S2367F	ENST00000409792	NM_014159.6	2367	tCt/tTt						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47147551	47147551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	273	297	0	ENST00000409792.3:c.4775G>T	p.Arg1592Leu	p.R1592L	ENST00000409792	NM_014159.6	1592	cGa/cTa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187519141	187519141	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			160	278	302	0	ENST00000441802.2:c.12242T>A	p.Leu4081Ter	p.L4081*	ENST00000441802	NM_005245.3	4081	tTa/tAa						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38947395	38947395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1052	113	322	0	ENST00000357387.3:c.4285C>T	p.Leu1429Phe	p.L1429F	ENST00000357387	NM_152756.3	1429	Ctc/Ttc						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67589138	67589138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			132	215	338	0	ENST00000274335.5:c.1126G>A	p.Gly376Arg	p.G376R	ENST00000274335		376	Gga/Aga						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30672030	30672030	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			691	225	552	0	ENST00000376406.3:c.4930A>G	p.Arg1644Gly	p.R1644G	ENST00000376406	NM_014641.2	1644	Agg/Ggg						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2972213	2972213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	444	251	0	ENST00000396946.4:c.1526G>T	p.Arg509Ile	p.R509I	ENST00000396946	NM_032415.4	509	aGa/aTa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151860254	151860254	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	415	469	0	ENST00000262189.6:c.10408C>T	p.Gln3470Ter	p.Q3470*	ENST00000262189	NM_170606.2	3470	Cag/Tag						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49420213	49420213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			527	329	317	0	ENST00000301067.7:c.15536G>T	p.Arg5179Leu	p.R5179L	ENST00000301067	NM_003482.3	5179	cGt/cTt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49448398	49448398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			697	422	470	0	ENST00000301067.7:c.313C>T	p.Pro105Ser	p.P105S	ENST00000301067	NM_003482.3	105	Ccc/Tcc						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	347933	347933	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			943	261	992	0	ENST00000262320.3:c.1573G>C	p.Asp525His	p.D525H	ENST00000262320	NM_003502.3	525	Gac/Cac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			108	260	175	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126							NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56448335	56448335	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	274	238	0	ENST00000407977.2:c.312C>G	p.Ile104Met	p.I104M	ENST00000407977		104	atC/atG						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7152939	7152939	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	179	228	0	ENST00000302850.5:c.2030-1G>T		p.X677_splice	ENST00000302850	NM_000208.2	677							NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15302839	15302839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			352	183	222	0	ENST00000263388.2:c.611C>T	p.Ser204Leu	p.S204L	ENST00000263388	NM_000435.2	204	tCa/tTa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	35	271	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41419957	41419957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	64	473	0	ENST00000373198.4:c.364G>A	p.Val122Ile	p.V122I	ENST00000373198	NM_133170.3	122	Gtc/Atc						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215593448	215593449	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0004375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	130	420	0	ENST00000260947.4:c.2285_2286delinsTT	p.Trp762Phe	p.W762F	ENST00000260947	NM_000465.2	762	tGG/tTT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0001367-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			86	58	221	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126							NEWRECORD																																																																									
PIK3R2	5296	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001367-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	74	357	4	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68842698	68842698	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001367-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			268	176	459	0	ENST00000261769.5:c.635del	p.Gly212AspfsTer3	p.G212Dfs*3	ENST00000261769	NM_004360.3	212	Gga/ga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	75	412	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29498290	29498290	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			710	83	458	0	ENST00000389048.3:c.1890C>G	p.Ile630Met	p.I630M	ENST00000389048	NM_004304.4	630	atC/atG						NEWRECORD																																																																									
CUL3	8452	MSKCC	GRCh37	2	225365113	225365113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			686	105	416	0	ENST00000264414.4:c.1577C>T	p.Pro526Leu	p.P526L	ENST00000264414	NM_003590.4	526	cCa/cTa						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152265544	152265544	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			528	73	330	0	ENST00000206249.3:c.997C>A	p.Pro333Thr	p.P333T	ENST00000206249	NM_000125.3	333	Cct/Act						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508556	106508556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			423	129	211	0	ENST00000359195.3:c.550C>A	p.Arg184Ser	p.R184S	ENST00000359195	NM_002649.2	184	Cgc/Agc						NEWRECORD																																																																									
SH2D1A	4068	MSKCC	GRCh37	X	123480514	123480514	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			728	81	426	0	ENST00000371139.4:c.22C>G	p.His8Asp	p.H8D	ENST00000371139	NM_001114937.2	8	Cat/Gat						NEWRECORD																																																																									
IKBKE	9641	MSKCC	GRCh37	1	206664151	206664151	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0002351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			571	76	374	0	ENST00000367120.3:c.1695del		p.X565_splice	ENST00000367120	NM_014002.3	565							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001190-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	245	557	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0001190-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			142	207	771	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175758	112175758	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001190-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			58	115	439	0	ENST00000257430.4:c.4467del	p.Leu1489PhefsTer18	p.L1489Ffs*18	ENST00000257430	NM_000038.5	1489	ttA/tt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000495-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	347	319	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
FOXL2	668	MSKCC	GRCh37	3	138665107	138665107	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000495-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			159	16	223	0	ENST00000330315.3:c.458T>C	p.Phe153Ser	p.F153S	ENST00000330315	NM_023067.3	153	tTc/tCc						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38963103	38963103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000495-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			774	96	485	0	ENST00000357387.3:c.1441G>A	p.Glu481Lys	p.E481K	ENST00000357387	NM_152756.3	481	Gaa/Aaa						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50444347	50444347	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000495-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			474	38	224	0	ENST00000331340.3:c.277A>C	p.Asn93His	p.N93H	ENST00000331340	NM_006060.4	93	Aat/Cat						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139395204	139395204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000495-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			634	39	414	0	ENST00000277541.6:c.5734G>A	p.Asp1912Asn	p.D1912N	ENST00000277541	NM_017617.3	1912	Gac/Aac						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41223226	41223226	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000495-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			431	40	300	0	ENST00000357654.3:c.4705A>G	p.Ser1569Gly	p.S1569G	ENST00000357654	NM_007294.3	1569	Agc/Ggc						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5214685	5214685	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000495-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	87	501	0	ENST00000357368.4:c.4381T>A	p.Tyr1461Asn	p.Y1461N	ENST00000357368	NM_002850.3	1461	Tac/Aac						NEWRECORD																																																																									
AXL	558	MSKCC	GRCh37	19	41765681	41765681	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000495-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			577	56	552	0	ENST00000301178.4:c.2557A>T	p.Ser853Cys	p.S853C	ENST00000301178	NM_021913.4	853	Agc/Tgc						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44514648	44514648	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000495-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			489	67	307	0	ENST00000291552.4:c.508A>T	p.Asn170Tyr	p.N170Y	ENST00000291552	NM_006758.2	170	Aac/Tac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000495-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			299	122	382	0	ENST00000269305.4:c.949delC	p.Gln317SerfsTer28	p.Q317Sfs*28	ENST00000269305	NM_001126112.2	317	Cag/ag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577557	7577557	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000557-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	25	223	0	ENST00000269305.4:c.724T>G	p.Cys242Gly	p.C242G	ENST00000269305	NM_001126112.2	242	Tgc/Ggc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	34	463	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003005-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			618	62	323	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003005-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	66	281	2	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa						NEWRECORD																																																																									
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913476		P-0003005-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			944	37	535	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0004403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	55	489	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0004403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	65	521	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0004403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	54	250	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89685309	89685309	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	41	395	1	ENST00000371953.3:c.204C>G	p.Tyr68Ter	p.Y68*	ENST00000371953	NM_000314.4	68	taC/taG						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575096	48575096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	58	513	1	ENST00000342988.3:c.290G>A	p.Arg97His	p.R97H	ENST00000342988	NM_005359.5	97	cGt/cAt						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63411164	63411164	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	55	578	0	ENST00000330258.3:c.2003del	p.Ala668GlufsTer51	p.A668Efs*51	ENST00000330258	NM_152424.3	668	gCa/ga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0003774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	362	248	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0003774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	237	319	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt						NEWRECORD																																																																									
FAM46C	54855	MSKCC	GRCh37	1	118165602	118165602	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs921184290		P-0003774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	138	226	0	ENST00000369448.3:c.112C>T	p.Arg38Ter	p.R38*	ENST00000369448	NM_017709.3	38	Cga/Tga						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30713506	30713506	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	101	170	0	ENST00000359013.4:c.906G>C	p.Lys302Asn	p.K302N	ENST00000359013	NM_001024847.2	302	aaG/aaC						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59770823	59770823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	163	330	1	ENST00000259008.2:c.2543G>A	p.Arg848His	p.R848H	ENST00000259008	NM_032043.2	848	cGc/cAc						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30713832	30713832	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	21	136	0	ENST00000359013.4:c.1232T>C	p.Leu411Pro	p.L411P	ENST00000359013	NM_001024847.2	411	cTc/cCc						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29527570	29527570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	44	267	0	ENST00000358273.4:c.1019C>T	p.Ser340Phe	p.S340F	ENST00000358273	NM_001042492.2	340	tCt/tTt						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89711965	89711965	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	151	161	0	ENST00000371953.3:c.585del	p.His196ThrfsTer3	p.H196Tfs*3	ENST00000371953	NM_000314.4	195	Ttt/tt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577543	7577543	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	117	177	0	ENST00000269305.4:c.738del	p.Met246IlefsTer99	p.M246Ifs*99	ENST00000269305	NM_001126112.2	246	atG/at						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108122673	108122680	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGAATC	AAGGAATC	-			P-0004394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	162	176	0	ENST00000278616.4:c.1719_1726del	p.Lys573AsnfsTer13	p.K573Nfs*13	ENST00000278616	NM_000051.3	573	AAGGAATCa/a						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0003276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	524	247	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579369	7579369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	146	196	0	ENST00000269305.4:c.318C>G	p.Ser106Arg	p.S106R	ENST00000269305	NM_001126112.2	106	agC/agG						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46245033	46245033	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	525	375	0	ENST00000334344.6:c.3127C>T	p.Gln1043Ter	p.Q1043*	ENST00000334344	NM_152641.2	1043	Caa/Taa						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207019	1207054	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	ACCAGCCGCGCCGCAAGCGGGCCAAGCTCATCGGCA	ACCAGCCGCGCCGCAAGCGGGCCAAGCTCATCGGCA	-			P-0003276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	245	171	0	ENST00000326873.7:c.108_143del	p.Tyr36_Lys48delinsTer	p.Y36_K48delins*	ENST00000326873	NM_000455.4	36	tACCAGCCGCGCCGCAAGCGGGCCAAGCTCATCGGCAag/tag						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114925652	114925654	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0003276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	301	542	2	ENST00000543371.1:c.1734_1736del	p.Ser579del	p.S579del	ENST00000543371	NM_001198531.1	577	aCTTct/act						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10599867	10599868	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0003276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	325	386	0	ENST00000171111.5:c.1708_1708+1delinsTT		p.X570_splice	ENST00000171111	NM_203500.1	570							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0002119-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			40	22	147	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002119-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			150	85	421	1	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89685316	89685316	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0002119-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			109	48	213	0	ENST00000371953.3:c.209+2T>C		p.X70_splice	ENST00000371953	NM_000314.4	70							NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64577392	64577392	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			225	188	477	2	ENST00000337652.1:c.190C>T	p.Gln64Ter	p.Q64*	ENST00000337652	NM_130803.2	64	Cag/Tag						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2105402	2105402	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0001993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	66	354	0	ENST00000219476.3:c.482-1G>A		p.X161_splice	ENST00000219476	NM_000548.3	161							NEWRECORD																																																																									
DAXX	1616	MSKCC	GRCh37	6	33288980	33288980	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			208	230	313	0	ENST00000374542.5:c.572del	p.Leu191TrpfsTer38	p.L191Wfs*38	ENST00000374542	NM_001141970.1	191	tTg/tg						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0002566-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	177	277	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0002566-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			150	39	312	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA						NEWRECORD																																																																									
PMS2	5395	MSKCC	GRCh37	7	6029533	6029533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002566-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	46	520	0	ENST00000265849.7:c.1042G>A	p.Glu348Lys	p.E348K	ENST00000265849	NM_000535.5	348	Gaa/Aaa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0000352-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			546	199	465	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000352-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			641	91	512	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259439	55259439	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs397517126		P-0000352-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	170	453	0	ENST00000275493.2:c.2497T>G	p.Leu833Val	p.L833V	ENST00000275493	NM_005228.3	833	Ttg/Gtg						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21970971	21970971	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000352-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	105	649	1	ENST00000304494.5:c.387C>A	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taC/taA						NEWRECORD																																																																									
CCND1	595	MSKCC	GRCh37	11	69462768	69462768	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000912-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			287	107	701	2	ENST00000227507.2:c.581A>G	p.Lys194Arg	p.K194R	ENST00000227507	NM_053056.2	194	aAg/aGg						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000912-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			450	151	921	0	ENST00000347630.2:c.398T>C	p.Phe133Ser	p.F133S	ENST00000347630	NM_001007230.1	133	tTc/tCc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001043-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			137	94	349	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001043-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			379	9	486	1	ENST00000263967.3:c.278G>T	p.Arg93Leu	p.R93L	ENST00000263967	NM_006218.2	93	cGg/cTg						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176638392	176638392	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001043-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	98	463	0	ENST00000439151.2:c.2992T>G	p.Leu998Val	p.L998V	ENST00000439151	NM_022455.4	998	Tta/Gta						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8106022	8106022	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001043-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			160	288	302	3	ENST00000346208.3:c.842A>G	p.His281Arg	p.H281R	ENST00000346208		281	cAc/cGc						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56168793	56168793	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001043-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	179	426	0	ENST00000399503.3:c.1649del	p.Pro550LeufsTer7	p.P550Lfs*7	ENST00000399503	NM_005921.1	549	atC/at						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56170991	56170991	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001043-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			208	113	190	0	ENST00000399503.3:c.1823del	p.Gly608AlafsTer48	p.G608Afs*48	ENST00000399503	NM_005921.1	607	Ggg/gg						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0003556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	75	345	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG						NEWRECORD																																																																									
MYC	4609	MSKCC	GRCh37	8	128748869	128748869	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0003556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	217	548	0	ENST00000377970.2:c.30G>C	p.Gln10His	p.Q10H	ENST00000377970	NM_002467.4	10	caG/caC						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8499826	8499826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	96	334	0	ENST00000356435.5:c.2143C>A	p.Pro715Thr	p.P715T	ENST00000356435		715	Cct/Act						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	101	218	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0004129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	1087	471	1	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149436878	149436878	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	105	381	0	ENST00000286301.3:c.2291A>C	p.Gln764Pro	p.Q764P	ENST00000286301	NM_005211.3	764	cAg/cCg						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151945036	151945036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	98	215	0	ENST00000262189.6:c.2483C>T	p.Pro828Leu	p.P828L	ENST00000262189	NM_170606.2	828	cCa/cTa						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46124999	46124999	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0004129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	121	326	0	ENST00000334344.6:c.187-1G>T		p.X63_splice	ENST00000334344	NM_152641.2	63							NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47035965	47035965	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	155	277	0	ENST00000329236.7:c.412G>T	p.Glu138Ter	p.E138*	ENST00000329236	NM_001204466.1	138	Gag/Tag						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63412320	63412320	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	166	350	0	ENST00000330258.3:c.847G>T	p.Glu283Ter	p.E283*	ENST00000330258	NM_152424.3	283	Gag/Tag						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70356506	70356506	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0004129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			58	116	194	0	ENST00000374080.3:c.5400+1G>T		p.X1800_splice	ENST00000374080		1800							NEWRECORD																																																																									
FOXP1	27086	MSKCC	GRCh37	3	71096192	71096192	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	78	356	0	ENST00000318789.4:c.565C>T	p.Gln189Ter	p.Q189*	ENST00000318789	NM_032682.5	189	Cag/Tag						NEWRECORD																																																																									
HIST1H3C	8352	MSKCC	GRCh37	6	26045804	26045804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	95	1014	0	ENST00000540144.1:c.166C>T	p.Gln56Ter	p.Q56*	ENST00000540144	NM_003531.2	56	Cag/Tag						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	26	549	0	ENST00000347630.2:c.392G>T	p.Trp131Leu	p.W131L	ENST00000347630	NM_001007230.1	131	tGg/tTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0004123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	241	298	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0004123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	221	481	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921555	178921555	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	63	231	0	ENST00000263967.3:c.1037T>A	p.Val346Glu	p.V346E	ENST00000263967	NM_006218.2	346	gTa/gAa						NEWRECORD																																																																									
VEGFA	7422	MSKCC	GRCh37	6	43749764	43749764	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1140	73	526	0	ENST00000523873.1:c.617G>C	p.Cys206Ser	p.C206S	ENST00000523873		206	tGc/tCc						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266099	41266119	+	inframe_deletion	In_Frame_Del	DEL	CTCTGGAATCCATTCTGGTGC	CTCTGGAATCCATTCTGGTGC	-			P-0004123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	82	332	0	ENST00000349496.5:c.97_117del	p.Ser33_Ala39del	p.S33_A39del	ENST00000349496	NM_001904.3	32	gaCTCTGGAATCCATTCTGGTGCc/gac						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000931-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			827	113	414	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0004608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	125	687	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0004608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	89	488	1	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt						NEWRECORD																																																																									
ACVR1	90	MSKCC	GRCh37	2	158622630	158622630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	135	1020	2	ENST00000263640.3:c.869C>T	p.Ser290Leu	p.S290L	ENST00000263640	NM_001105.4	290	tCg/tTg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173531	112173531	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	109	539	0	ENST00000257430.4:c.2240C>A	p.Ser747Ter	p.S747*	ENST00000257430	NM_000038.5	747	tCa/tAa						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31374389	31374389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1138	158	633	0	ENST00000328111.2:c.388C>T	p.Arg130Cys	p.R130C	ENST00000328111	NM_006892.3	130	Cgc/Tgc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40770587	40770587	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776338672		P-0004608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	54	567	0	ENST00000373198.4:c.2795G>A	p.Arg932His	p.R932H	ENST00000373198	NM_133170.3	932	cGc/cAc						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66766199	66766199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	65	339	0	ENST00000374690.3:c.1211C>T	p.Ala404Val	p.A404V	ENST00000374690	NM_000044.3	404	gCg/gTg						NEWRECORD																																																																									
PPM1D	8493	MSKCC	GRCh37	17	58734156	58734156	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1515	179	967	0	ENST00000305921.3:c.1216del	p.Thr406ProfsTer3	p.T406Pfs*3	ENST00000305921	NM_003620.3	405	gAa/ga						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31022643	31022643	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1250	201	650	0	ENST00000375687.4:c.2129del	p.Gly710GlufsTer15	p.G710Efs*15	ENST00000375687	NM_015338.5	710	Gga/ga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175903	112175903	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	98	453	0	ENST00000257430.4:c.4612del	p.Glu1538AsnfsTer27	p.E1538Nfs*27	ENST00000257430	NM_000038.5	1538	Gaa/aa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578448	7578448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	50	191	0	ENST00000269305.4:c.482C>A	p.Ala161Asp	p.A161D	ENST00000269305	NM_001126112.2	161	gCc/gAc						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36206818	36206831	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCTGCTCCAGT	GCAGCTGCTCCAGT	-			P-0004160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	16	147	0	ENST00000300305.3:c.681_694del	p.Leu228AlafsTer28	p.L228Afs*28	ENST00000300305		227	gaACTGGAGCAGCTGCgg/gagg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0001899-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			683	837	352	8	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577564	7577564	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001899-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			742	348	258	0	ENST00000269305.4:c.717C>G	p.Asn239Lys	p.N239K	ENST00000269305	NM_001126112.2	239	aaC/aaG						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000647-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			718	161	890	0	ENST00000269305.4:c.646G>C	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ctg						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8525035	8525035	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	92	341	1	ENST00000356435.5:c.569G>A	p.Gly190Glu	p.G190E	ENST00000356435		190	gGa/gAa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000349-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	196	667	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162724593	162724593	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000349-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			458	92	528	0	ENST00000367921.3:c.365A>G	p.Tyr122Cys	p.Y122C	ENST00000367921	NM_006182.2	122	tAc/tGc						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55955632	55955632	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000349-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	77	831	0	ENST00000263923.4:c.3313C>A	p.Pro1105Thr	p.P1105T	ENST00000263923	NM_002253.2	1105	Cca/Aca						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32185820	32185820	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201418371		P-0000349-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	36	531	0	ENST00000375023.3:c.1576G>A	p.Ala526Thr	p.A526T	ENST00000375023	NM_004557.3	526	Gcg/Acg						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8504401	8504401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757922864		P-0000349-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			291	23	420	0	ENST00000356435.5:c.1682G>A	p.Arg561Gln	p.R561Q	ENST00000356435		561	cGa/cAa						NEWRECORD																																																																									
FGF3	2248	MSKCC	GRCh37	11	69625330	69625330	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143483033		P-0000349-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	159	844	0	ENST00000334134.2:c.463G>A	p.Val155Met	p.V155M	ENST00000334134	NM_005247.2	155	Gtg/Atg						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42794023	42794023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000349-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			484	58	620	0	ENST00000575354.2:c.1384G>A	p.Asp462Asn	p.D462N	ENST00000575354	NM_015125.3	462	Gac/Aac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0004502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	69	365	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0004502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	63	526	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114920437	114920437	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	148	678	0	ENST00000543371.1:c.1378T>C	p.Cys460Arg	p.C460R	ENST00000543371	NM_001198531.1	460	Tgc/Cgc						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5211650	5211650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	97	429	0	ENST00000357368.4:c.5185G>A	p.Gly1729Ser	p.G1729S	ENST00000357368	NM_002850.3	1729	Ggt/Agt						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41558757	41558757	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	111	580	0	ENST00000263253.7:c.3702A>T	p.Arg1234Ser	p.R1234S	ENST00000263253	NM_001429.3	1234	agA/agT						NEWRECORD																																																																									
JUN	3725	MSKCC	GRCh37	1	59248632	59248632	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	108	472	0	ENST00000371222.2:c.111del	p.Ser37ArgfsTer2	p.S37Rfs*2	ENST00000371222	NM_002228.3	37	agC/ag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	398	318	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			118	580	372	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178922324	178922324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793732		P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			578	412	316	0	ENST00000263967.3:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000263967	NM_006218.2	365	Gaa/Aaa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023692	27023692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			84	340	173	0	ENST00000324856.7:c.798C>A	p.Phe266Leu	p.F266L	ENST00000324856	NM_006015.4	266	ttC/ttA						NEWRECORD																																																																									
PIK3R3	8503	MSKCC	GRCh37	1	46546348	46546348	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			180	665	411	0	ENST00000262741.5:c.181C>T	p.Gln61Ter	p.Q61*	ENST00000262741	NM_003629.3	61	Cag/Tag						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65301842	65301842	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			131	413	257	0	ENST00000342505.4:c.3197C>G	p.Ser1066Cys	p.S1066C	ENST00000342505	NM_002227.2	1066	tCt/tGt						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65301898	65301898	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			93	269	168	0	ENST00000342505.4:c.3141G>A	p.Trp1047Ter	p.W1047*	ENST00000342505	NM_002227.2	1047	tgG/tgA						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65303735	65303735	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			182	462	321	0	ENST00000342505.4:c.3020G>C	p.Arg1007Thr	p.R1007T	ENST00000342505	NM_002227.2	1007	aGa/aCa						NEWRECORD																																																																									
RIT1	6016	MSKCC	GRCh37	1	155880514	155880514	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1607	501	347	0	ENST00000368323.3:c.39C>G	p.Ser13Arg	p.S13R	ENST00000368323	NM_006912.5	13	agC/agG						NEWRECORD																																																																									
SDHC	6391	MSKCC	GRCh37	1	161326547	161326547	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	88	64	0	ENST00000367975.2:c.322C>G	p.Leu108Val	p.L108V	ENST00000367975	NM_003001.3	108	Ctg/Gtg						NEWRECORD																																																																									
ERCC3	2071	MSKCC	GRCh37	2	128015190	128015190	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			579	377	367	0	ENST00000285398.2:c.2331C>G	p.Phe777Leu	p.F777L	ENST00000285398	NM_000122.1	777	ttC/ttG						NEWRECORD																																																																									
ERCC3	2071	MSKCC	GRCh37	2	128015230	128015230	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs189511674		P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			525	400	365	0	ENST00000285398.2:c.2291C>T	p.Ser764Leu	p.S764L	ENST00000285398	NM_000122.1	764	tCg/tTg						NEWRECORD																																																																									
CUL3	8452	MSKCC	GRCh37	2	225371665	225371665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			823	629	397	0	ENST00000264414.4:c.939G>A	p.Met313Ile	p.M313I	ENST00000264414	NM_003590.4	313	atG/atA						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47142964	47142964	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			704	469	363	0	ENST00000409792.3:c.4999C>T	p.Gln1667Ter	p.Q1667*	ENST00000409792	NM_014159.6	1667	Cag/Tag						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185183575	185183575	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs185398541		P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			536	379	337	0	ENST00000265026.3:c.1429G>C	p.Glu477Gln	p.E477Q	ENST00000265026	NM_004721.4	477	Gag/Cag						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55599284	55599284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145602440		P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			629	487	275	0	ENST00000288135.5:c.2410C>T	p.Arg804Trp	p.R804W	ENST00000288135	NM_000222.2	804	Cgg/Tgg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174068	112174068	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			592	446	283	0	ENST00000257430.4:c.2777C>G	p.Ser926Cys	p.S926C	ENST00000257430	NM_000038.5	926	tCt/tGt						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131925464	131925464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	382	241	0	ENST00000265335.6:c.1387G>A	p.Glu463Lys	p.E463K	ENST00000265335		463	Gaa/Aaa						NEWRECORD																																																																									
CDKN1A	1026	MSKCC	GRCh37	6	36652251	36652251	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	376	277	0	ENST00000244741.5:c.373G>C	p.Glu125Gln	p.E125Q	ENST00000244741	NM_000389.4	125	Gag/Cag						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50450326	50450326	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	360	332	0	ENST00000331340.3:c.510G>C	p.Glu170Asp	p.E170D	ENST00000331340	NM_006060.4	170	gaG/gaC						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55240762	55240762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	252	315	0	ENST00000275493.2:c.2006G>A	p.Arg669Gln	p.R669Q	ENST00000275493	NM_005228.3	669	cGa/cAa						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5089863	5089863	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			481	344	267	0	ENST00000381652.3:c.2761G>A	p.Gly921Ser	p.G921S	ENST00000381652	NM_004972.3	921	Ggt/Agt						NEWRECORD																																																																									
CD274	29126	MSKCC	GRCh37	9	5462911	5462911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			612	434	338	0	ENST00000381577.3:c.472G>A	p.Glu158Lys	p.E158K	ENST00000381577	NM_014143.3	158	Gag/Aag						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133755898	133755898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	303	287	0	ENST00000318560.5:c.1525G>A	p.Glu509Lys	p.E509K	ENST00000318560	NM_005157.4	509	Gag/Aag						NEWRECORD																																																																									
PAK1	5058	MSKCC	GRCh37	11	77047169	77047169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			6231	422	322	0	ENST00000356341.3:c.1375G>A	p.Glu459Lys	p.E459K	ENST00000356341	NM_002576.4	459	Gaa/Aaa						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18691194	18691194	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			635	443	321	0	ENST00000266497.5:c.3305C>G	p.Ala1102Gly	p.A1102G	ENST00000266497		1102	gCt/gGt						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46246664	46246664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	226	126	0	ENST00000334344.6:c.4758G>T	p.Gln1586His	p.Q1586H	ENST00000334344	NM_152641.2	1586	caG/caT						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21549383	21549383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	230	221	0	ENST00000382592.4:c.2893G>A	p.Asp965Asn	p.D965N	ENST00000382592	NM_014572.2	965	Gat/Aat						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28588626	28588626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			608	460	391	0	ENST00000241453.7:c.2822C>T	p.Ser941Leu	p.S941L	ENST00000241453	NM_004119.2	941	tCg/tTg						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91304464	91304464	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	370	249	0	ENST00000355112.3:c.1861G>C	p.Glu621Gln	p.E621Q	ENST00000355112	NM_000057.2	621	Gag/Cag						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3789661	3789661	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1105	474	410	0	ENST00000262367.5:c.4198G>C	p.Glu1400Gln	p.E1400Q	ENST00000262367	NM_004380.2	1400	Gag/Cag						NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14014026	14014026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			982	406	286	0	ENST00000311895.7:c.4G>A	p.Glu2Lys	p.E2K	ENST00000311895	NM_005236.2	2	Gag/Aag						NEWRECORD																																																																									
SUZ12	23512	MSKCC	GRCh37	17	30321730	30321730	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			530	330	304	0	ENST00000322652.5:c.1585C>G	p.Leu529Val	p.L529V	ENST00000322652	NM_015355.2	529	Ctt/Gtt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1223126	1223126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			582	360	347	0	ENST00000326873.7:c.1063G>A	p.Asp355Asn	p.D355N	ENST00000326873	NM_000455.4	355	Gac/Aac						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17955183	17955183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			425	266	259	0	ENST00000458235.1:c.44C>T	p.Ser15Leu	p.S15L	ENST00000458235	NM_000215.3	15	tCa/tTa						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31022877	31022877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			573	432	285	0	ENST00000375687.4:c.2362G>A	p.Glu788Lys	p.E788K	ENST00000375687	NM_015338.5	788	Gaa/Aaa						NEWRECORD																																																																									
TOP1	7150	MSKCC	GRCh37	20	39726959	39726959	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			472	335	237	0	ENST00000361337.2:c.957G>C	p.Met319Ile	p.M319I	ENST00000361337	NM_003286.2	319	atG/atC						NEWRECORD																																																																									
SMARCB1	6598	MSKCC	GRCh37	22	24145531	24145531	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776374083		P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			480	419	341	0	ENST00000263121.7:c.550G>A	p.Glu184Lys	p.E184K	ENST00000263121	NM_003073.3	184	Gag/Aag						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70357219	70357219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			333	368	261	2	ENST00000374080.3:c.5734C>T	p.Arg1912Cys	p.R1912C	ENST00000374080		1912	Cgc/Tgc						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0001718-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			898	154	636	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692893	89692893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001718-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			287	127	308	0	ENST00000371953.3:c.377C>A	p.Ala126Asp	p.A126D	ENST00000371953	NM_000314.4	126	gCt/gAt						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0001718-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			644	46	531	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68772294	68772316	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	GAGGCCGCGTCCTGGGCAGAGGT	GAGGCCGCGTCCTGGGCAGAGGT	-			P-0001718-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			352	111	583	0	ENST00000261769.5:c.147_163+6del		p.X49_splice	ENST00000261769	NM_004360.3	49							NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55984963	55984963	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	69	364	0	ENST00000263923.4:c.166C>T	p.Gln56Ter	p.Q56*	ENST00000263923	NM_002253.2	56	Cag/Tag						NEWRECORD																																																																									
MDM2	4193	MSKCC	GRCh37	12	69222593	69222593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	65	337	0	ENST00000462284.1:c.566G>A	p.Arg189His	p.R189H	ENST00000462284	NM_002392.5	189	cGc/cAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs28934873		P-0003575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	271	187	0	ENST00000269305.4:c.398T>C	p.Met133Thr	p.M133T	ENST00000269305	NM_001126112.2	133	aTg/aCg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173730	112173730	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	227	301	0	ENST00000257430.4:c.2442del	p.Phe814LeufsTer6	p.F814Lfs*6	ENST00000257430	NM_000038.5	813	aaT/aa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000694-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	71	192	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215610503	215610503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000694-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	30	369	1	ENST00000260947.4:c.1753C>A	p.Leu585Ile	p.L585I	ENST00000260947	NM_000465.2	585	Ctc/Atc						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108206579	108206579	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000694-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	26	199	0	ENST00000278616.4:c.8159A>G	p.Asp2720Gly	p.D2720G	ENST00000278616	NM_000051.3	2720	gAt/gGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0003602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	87	474	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30733024	30733024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	85	279	0	ENST00000359013.4:c.1712G>A	p.Arg571Lys	p.R571K	ENST00000359013	NM_001024847.2	571	aGg/aAg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720808	89720808	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0003602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	39	117	0	ENST00000371953.3:c.959T>G	p.Leu320Ter	p.L320*	ENST00000371953	NM_000314.4	320	tTa/tGa						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142272804	142272804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	140	442	0	ENST00000350721.4:c.2395G>A	p.Glu799Lys	p.E799K	ENST00000350721	NM_001184.3	799	Gaa/Aaa						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189612154	189612154	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	77	401	0	ENST00000264731.3:c.1906G>T	p.Glu636Ter	p.E636*	ENST00000264731	NM_003722.4	636	Gag/Tag						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56177754	56177754	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	73	398	0	ENST00000399503.3:c.2727G>C	p.Glu909Asp	p.E909D	ENST00000399503	NM_005921.1	909	gaG/gaC						NEWRECORD																																																																									
FGFR4	2264	MSKCC	GRCh37	5	176520447	176520447	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	57	437	0	ENST00000292408.4:c.1292C>A	p.Ser431Tyr	p.S431Y	ENST00000292408	NM_213647.1	431	tCc/tAc						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176722206	176722207	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	42	481	0	ENST00000439151.2:c.7837_7838delinsAT	p.Glu2613Ile	p.E2613I	ENST00000439151	NM_022455.4	2613	GAa/ATa						NEWRECORD																																																																									
PRDM1	639	MSKCC	GRCh37	6	106553166	106553166	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	47	350	0	ENST00000369096.4:c.1131G>C	p.Leu377Phe	p.L377F	ENST00000369096	NM_001198.3	377	ttG/ttC						NEWRECORD																																																																									
IFNGR1	3459	MSKCC	GRCh37	6	137524774	137524774	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	139	407	0	ENST00000367739.4:c.595C>A	p.Gln199Lys	p.Q199K	ENST00000367739	NM_000416.2	199	Cag/Aag						NEWRECORD																																																																									
CDK6	1021	MSKCC	GRCh37	7	92404075	92404075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	77	458	1	ENST00000265734.4:c.304G>A	p.Asp102Asn	p.D102N	ENST00000265734	NM_001259.6	102	Gat/Aat						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89712017	89712017	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	53	147	0	ENST00000371953.3:c.634+1G>A		p.X212_splice	ENST00000371953	NM_000314.4	212							NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103515177	103515177	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	58	398	0	ENST00000355739.4:c.1678C>G	p.Leu560Val	p.L560V	ENST00000355739	NM_000123.3	560	Ctt/Gtt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	111	316	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15968268	15968268	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	31	539	0	ENST00000268712.3:c.5017C>A	p.Pro1673Thr	p.P1673T	ENST00000268712	NM_006311.3	1673	Cct/Act						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16001793	16001793	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	84	467	0	ENST00000268712.3:c.2708C>G	p.Ser903Ter	p.S903*	ENST00000268712	NM_006311.3	903	tCa/tGa						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29509567	29509567	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	97	429	0	ENST00000358273.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000358273	NM_001042492.2	258	Gaa/Taa						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47685245	47685245	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	141	499	0	ENST00000347630.2:c.705G>C	p.Glu235Asp	p.E235D	ENST00000347630	NM_001007230.1	235	gaG/gaC						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70342170	70342170	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	73	539	0	ENST00000374080.3:c.1222G>C	p.Glu408Gln	p.E408Q	ENST00000374080		408	Gag/Cag						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000847-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			639	144	325	1	ENST00000250448.2:c.781C>T	p.Arg261Cys	p.R261C	ENST00000250448	NM_004496.3	261	Cgc/Tgc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0002229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			248	140	229	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115120876	115120877	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0002229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			558	205	290	0	ENST00000257566.3:c.129_130del	p.Leu44AspfsTer66	p.L44Dfs*66	ENST00000257566	NM_016569.3	43	gcGCtg/gctg						NEWRECORD																																																																									
STK40	83931	MSKCC	GRCh37	1	36814382	36814382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	10	412	0	ENST00000373129.3:c.658G>A	p.Gly220Arg	p.G220R	ENST00000373129	NM_032017.1	220	Ggg/Agg						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66233086	66233087	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	A			P-0004039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	10	242	0	ENST00000273854.3:c.1912_1913delinsT	p.His638LeufsTer10	p.H638Lfs*10	ENST00000273854	NM_004439.5	638	CAt/Tt						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0001722-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			98	143	337	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0001722-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	193	606	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112154943	112154943	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001722-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			481	202	608	0	ENST00000257430.4:c.1214G>T	p.Arg405Leu	p.R405L	ENST00000257430	NM_000038.5	405	cGa/cTa						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32188866	32188866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001722-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			261	117	525	0	ENST00000375023.3:c.688C>A	p.Arg230Ser	p.R230S	ENST00000375023	NM_004557.3	230	Cgt/Agt						NEWRECORD																																																																									
MYC	4609	MSKCC	GRCh37	8	128750529	128750529	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001722-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	197	665	0	ENST00000377970.2:c.66C>A	p.Phe22Leu	p.F22L	ENST00000377970	NM_002467.4	22	ttC/ttA						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29486070	29486070	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001722-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			450	154	546	0	ENST00000358273.4:c.247C>T	p.Gln83Ter	p.Q83*	ENST00000358273	NM_001042492.2	83	Cag/Tag						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120466537	120466538	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0001722-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			495	185	635	0	ENST00000256646.2:c.4581_4582del	p.Cys1527TrpfsTer10	p.C1527Wfs*10	ENST00000256646	NM_024408.3	1527	tgTGgt/tggt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002893-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	43	488	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0002893-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			484	26	405	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27097786	27097786	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002893-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	28	368	0	ENST00000324856.7:c.3375G>T	p.Lys1125Asn	p.K1125N	ENST00000324856	NM_006015.4	1125	aaG/aaT						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55599344	55599344	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002893-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	29	384	0	ENST00000288135.5:c.2470G>T	p.Val824Leu	p.V824L	ENST00000288135	NM_000222.2	824	Gtg/Ttg						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	10032255	10032255	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002893-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			262	21	320	0	ENST00000330684.3:c.568A>G	p.Thr190Ala	p.T190A	ENST00000330684	NM_001134407.1	190	Aca/Gca						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47044453	47044453	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0002893-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			172	21	271	0	ENST00000329236.7:c.1717-1G>C		p.X573_splice	ENST00000329236	NM_001204466.1	573							NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53241030	53241031	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0000458-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			751	45	335	2	ENST00000375401.3:c.1180_1181delCT	p.Leu394AlafsTer11	p.L394Afs*11	ENST00000375401	NM_004187.3	394	CTg/g						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	592	623	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0003077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	527	395	0	ENST00000269305.4:c.993+1G>C		p.X331_splice	ENST00000269305	NM_001126112.2	331							NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120459157	120459157	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	229	375	0	ENST00000256646.2:c.6188A>G	p.Asp2063Gly	p.D2063G	ENST00000256646	NM_024408.3	2063	gAt/gGt						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212488661	212488661	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	110	554	0	ENST00000342788.4:c.2188G>T	p.Gly730Ter	p.G730*	ENST00000342788	NM_005235.2	730	Gga/Tga						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153250870	153250870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	583	654	0	ENST00000281708.4:c.1190G>A	p.Gly397Asp	p.G397D	ENST00000281708	NM_033632.3	397	gGt/gAt						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180039609	180039609	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	79	512	1	ENST00000261937.6:c.3434G>A	p.Arg1145His	p.R1145H	ENST00000261937	NM_182925.4	1145	cGc/cAc						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70354300	70354300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	673	355	0	ENST00000374080.3:c.4711G>A	p.Asp1571Asn	p.D1571N	ENST00000374080		1571	Gac/Aac						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174099	112174099	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	375	522	0	ENST00000257430.4:c.2810del	p.Phe937SerfsTer18	p.F937Sfs*18	ENST00000257430	NM_000038.5	936	aaT/aa						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41564815	41564817	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0003077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	282	534	0	ENST00000263253.7:c.4119_4121del	p.Phe1374del	p.F1374del	ENST00000263253	NM_001429.3	1372	tgCTTc/tgc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002665-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			94	62	280	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0002665-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			94	26	203	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45394805	45394805	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002665-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			89	66	265	0	ENST00000262160.6:c.544C>T	p.Arg182Ter	p.R182*	ENST00000262160	NM_005901.5	182	Cga/Tga						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs794727798		P-0002665-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	129	290	1	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67473779	67473779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002665-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			180	87	205	0	ENST00000327367.4:c.859C>T	p.Arg287Trp	p.R287W	ENST00000327367	NM_005902.3	287	Cgg/Tgg						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99482445	99482445	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002665-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			178	89	213	1	ENST00000268035.6:c.3313G>T	p.Ala1105Ser	p.A1105S	ENST00000268035	NM_000875.3	1105	Gca/Tca						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175772	112175772	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002665-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	67	208	1	ENST00000257430.4:c.4483del	p.Ser1495ValfsTer12	p.S1495Vfs*12	ENST00000257430	NM_000038.5	1494	gAa/ga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0008714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	105	553	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162748403	162748403	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	156	442	0	ENST00000367921.3:c.2317T>C	p.Phe773Leu	p.F773L	ENST00000367921	NM_006182.2	773	Ttt/Ctt						NEWRECORD																																																																									
E2F3	1871	MSKCC	GRCh37	6	20480182	20480182	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	16	351	0	ENST00000346618.3:c.499C>G	p.Pro167Ala	p.P167A	ENST00000346618	NM_001949.4	167	Cca/Gca						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0007288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	88	391	2	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	32	283	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67645412	67645412	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	109	491	0	ENST00000264010.4:c.677A>G	p.Tyr226Cys	p.Y226C	ENST00000264010	NM_006565.3	226	tAc/tGc						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67654639	67654639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	33	542	0	ENST00000264010.4:c.1126G>A	p.Glu376Lys	p.E376K	ENST00000264010	NM_006565.3	376	Gag/Aag						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56160626	56160700	+	inframe_deletion	In_Frame_Del	DEL	CCCTGAGGAAACAAACCGCCGTGTTAACAAAGTGATGCGGGCCAGACTGTACTTACTGCAGCAGATAGGGCCTAA	CCCTGAGGAAACAAACCGCCGTGTTAACAAAGTGATGCGGGCCAGACTGTACTTACTGCAGCAGATAGGGCCTAA	-			P-0007288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	71	431	0	ENST00000399503.3:c.901_975del	p.Pro301_Asn325del	p.P301_N325del	ENST00000399503	NM_005921.1	300	agCCCTGAGGAAACAAACCGCCGTGTTAACAAAGTGATGCGGGCCAGACTGTACTTACTGCAGCAGATAGGGCCTAAc/agc						NEWRECORD																																																																									
GPS2	2874	MSKCC	GRCh37	17	7217872	7217875	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	-			P-0007288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	37	604	0	ENST00000380728.2:c.136_139delGAAG	p.Glu46AsnfsTer16	p.E46Nfs*16	ENST00000380728		46	GAAGaa/aa						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56180581	56180584	+	frameshift_variant	Frame_Shift_Del	DEL	CCAA	CCAA	-			P-0007288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	71	527	0	ENST00000399503.3:c.3910_3913del	p.Pro1304ThrfsTer31	p.P1304Tfs*31	ENST00000399503	NM_005921.1	1304	CCAAac/ac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	63	401	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
CUL3	8452	MSKCC	GRCh37	2	225371604	225371604	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	52	408	0	ENST00000264414.4:c.1000G>T	p.Glu334Ter	p.E334*	ENST00000264414	NM_003590.4	334	Gaa/Taa						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16262483	16262483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	23	165	0	ENST00000375759.3:c.9748G>A	p.Val3250Ile	p.V3250I	ENST00000375759	NM_015001.2	3250	Gtc/Atc						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55372289	55372289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	26	270	0	ENST00000297316.4:c.979C>A	p.Pro327Thr	p.P327T	ENST00000297316	NM_022454.3	327	Ccc/Acc						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717609	89717609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	29	221	0	ENST00000371953.3:c.635-1G>A		p.X212_splice	ENST00000371953	NM_000314.4	212							NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49442443	49442443	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0006379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	109	483	0	ENST00000301067.7:c.4130A>T	p.Gln1377Leu	p.Q1377L	ENST00000301067	NM_003482.3	1377	cAg/cTg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	135	575	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	26	387	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27057874	27057874	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	263	934	0	ENST00000324856.7:c.1582C>T	p.Gln528Ter	p.Q528*	ENST00000324856	NM_006015.4	528	Cag/Tag						NEWRECORD																																																																									
ACVR1	90	MSKCC	GRCh37	2	158617518	158617518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1165	305	1118	5	ENST00000263640.3:c.1138C>T	p.Arg380Cys	p.R380C	ENST00000263640	NM_001105.4	380	Cgc/Tgc						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134967266	134967266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	223	788	0	ENST00000398015.3:c.2605C>A	p.Pro869Thr	p.P869T	ENST00000398015	NM_004441.4	869	Ccc/Acc						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185190903	185190903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1222	262	1133	3	ENST00000265026.3:c.1784G>A	p.Ser595Asn	p.S595N	ENST00000265026	NM_004721.4	595	aGc/aAc						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187558011	187558011	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0006485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	115	478	1	ENST00000441802.2:c.3700A>T	p.Lys1234Ter	p.K1234*	ENST00000441802	NM_005245.3	1234	Aaa/Taa						NEWRECORD																																																																									
IRF4	3662	MSKCC	GRCh37	6	398881	398881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	184	742	0	ENST00000380956.4:c.691C>T	p.Pro231Ser	p.P231S	ENST00000380956	NM_001195286.1	231	Ccc/Tcc						NEWRECORD																																																																									
HIST1H3G	8355	MSKCC	GRCh37	6	26271224	26271224	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1502	318	1574	0	ENST00000305910.3:c.389G>T	p.Arg130Leu	p.R130L	ENST00000305910	NM_003534.2	130	cGc/cTc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	152007101	152007101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1270	196	742	0	ENST00000262189.6:c.799G>A	p.Glu267Lys	p.E267K	ENST00000262189	NM_170606.2	267	Gaa/Aaa						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76813092	76813092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	227	937	0	ENST00000373344.5:c.6529G>A	p.Asp2177Asn	p.D2177N	ENST00000373344	NM_000489.3	2177	Gat/Aat						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3781284	3781290	+	frameshift_variant	Frame_Shift_Del	DEL	TCCACCA	TCCACCA	-			P-0006485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	425	981	0	ENST00000262367.5:c.5075_5081del	p.Leu1692ArgfsTer50	p.L1692Rfs*50	ENST00000262367	NM_004380.2	1692	cTGGTGGAg/cg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	126	560	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99182123	99182123	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	103	489	0	ENST00000074304.5:c.2188G>T	p.Glu730Ter	p.E730*	ENST00000074304	NM_001134224.1	730	Gag/Tag						NEWRECORD																																																																									
RHOA	387	MSKCC	GRCh37	3	49399949	49399949	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	101	527	0	ENST00000418115.1:c.388G>T	p.Glu130Ter	p.E130*	ENST00000418115	NM_001664.2	130	Gag/Tag						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55131094	55131094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	100	483	0	ENST00000257290.5:c.637G>C	p.Glu213Gln	p.E213Q	ENST00000257290	NM_006206.4	213	Gag/Cag						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157256612	157256612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	68	442	0	ENST00000346085.5:c.1939G>A	p.Glu647Lys	p.E647K	ENST00000346085	NM_020732.3	647	Gaa/Aaa						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115114124	115114124	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	42	509	0	ENST00000257566.3:c.1093C>A	p.Leu365Ile	p.L365I	ENST00000257566	NM_016569.3	365	Ctc/Atc						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89809336	89809336	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	76	318	0	ENST00000389301.3:c.3637C>A	p.Pro1213Thr	p.P1213T	ENST00000389301	NM_000135.2	1213	Cct/Act						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249037	55249038	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0005261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	136	432	0	ENST00000275493.2:c.2335_2336delinsTT	p.Gly779Phe	p.G779F	ENST00000275493	NM_005228.3	779	GGc/TTc						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47041640	47041642	+	stop_gained	Nonsense_Mutation	ONP	CGG	CGG	AGT			P-0005261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	70	591	1	ENST00000329236.7:c.1631_1633delinsAGT	p.Ser544_Ala545delinsTer	p.S544_A545delins*	ENST00000329236	NM_001204466.1	544	tCGGcc/tAGTcc						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0007848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	66	423	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65339175	65339175	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1180823763		P-0006108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	187	374	0	ENST00000342505.4:c.361G>A	p.Asp121Asn	p.D121N	ENST00000342505	NM_002227.2	121	Gac/Aac						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56495537	56495537	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	235	444	0	ENST00000267101.3:c.3727C>G	p.Leu1243Val	p.L1243V	ENST00000267101	NM_001982.3	1243	Ctc/Gtc						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63530188	63530188	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	51	495	0	ENST00000307078.5:c.2247G>C	p.Glu749Asp	p.E749D	ENST00000307078	NM_004655.3	749	gaG/gaC						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68863656	68863656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	47	393	0	ENST00000261769.5:c.2395C>T	p.Pro799Ser	p.P799S	ENST00000261769	NM_004360.3	799	Ccc/Tcc						NEWRECORD																																																																									
GPS2	2874	MSKCC	GRCh37	17	7217630	7217630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	80	663	0	ENST00000380728.2:c.297del	p.Lys99AsnfsTer10	p.K99Nfs*10	ENST00000380728		99	aaA/aa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912660		P-0009894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	213	711	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89259581	89259581	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	82	354	0	ENST00000336596.2:c.725T>A	p.Met242Lys	p.M242K	ENST00000336596	NM_005233.5	242	aTg/aAg						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149447854	149447854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	132	596	0	ENST00000286301.3:c.1550C>A	p.Pro517Gln	p.P517Q	ENST00000286301	NM_005211.3	517	cCa/cAa						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	94066586	94066586	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	169	857	0	ENST00000369303.4:c.1173G>T	p.Gln391His	p.Q391H	ENST00000369303	NM_004440.3	391	caG/caT						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41730061	41730061	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1197	241	963	0	ENST00000242208.4:c.468G>A	p.Trp156Ter	p.W156*	ENST00000242208	NM_002192.2	156	tgG/tgA						NEWRECORD																																																																									
HNF1A	6927	MSKCC	GRCh37	12	121434442	121434442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	129	642	0	ENST00000257555.6:c.1206C>A	p.Asn402Lys	p.N402K	ENST00000257555		402	aaC/aaA						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2216382	2216382	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	125	462	0	ENST00000398665.3:c.2026A>T	p.Lys676Ter	p.K676*	ENST00000398665	NM_032482.2	676	Aag/Tag						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602697	10602697	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	164	510	1	ENST00000171111.5:c.881A>T	p.Asp294Val	p.D294V	ENST00000171111	NM_203500.1	294	gAc/gTc						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47041649	47041649	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	198	308	0	ENST00000329236.7:c.1640G>T	p.Gly547Val	p.G547V	ENST00000329236	NM_001204466.1	547	gGa/gTa						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221311	1221317	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCCCC	TGGCCCC	-			P-0009894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	159	618	0	ENST00000326873.7:c.834_840del	p.Gly279ArgfsTer6	p.G279Rfs*6	ENST00000326873	NM_000455.4	278	tgTGGCCCC/tg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579410	7579410	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	68	402	0	ENST00000269305.4:c.277del	p.Leu93CysfsTer30	p.L93Cfs*30	ENST00000269305	NM_001126112.2	93	Ctg/tg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0007581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	44	248	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99179990	99179990	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	46	477	0	ENST00000074304.5:c.1933A>T	p.Ser645Cys	p.S645C	ENST00000074304	NM_001134224.1	645	Agt/Tgt						NEWRECORD																																																																									
CDKN2B	1030	MSKCC	GRCh37	9	22006093	22006093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	35	316	0	ENST00000276925.6:c.310G>A	p.Ala104Thr	p.A104T	ENST00000276925	NM_004936.3	104	Gcg/Acg						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73346856	73346856	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	41	405	0	ENST00000377767.4:c.1361A>C	p.Lys454Thr	p.K454T	ENST00000377767	NM_014953.3	454	aAg/aCg						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42041098	42041098	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	82	859	1	ENST00000219905.7:c.5476T>G	p.Leu1826Val	p.L1826V	ENST00000219905	NM_001164273.1	1826	Tta/Gta						NEWRECORD																																																																									
STAT3	6774	MSKCC	GRCh37	17	40491357	40491357	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	42	609	0	ENST00000264657.5:c.443T>G	p.Leu148Arg	p.L148R	ENST00000264657	NM_139276.2	148	cTt/cGt						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56435014	56435014	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	29	389	0	ENST00000407977.2:c.2123A>G	p.Lys708Arg	p.K708R	ENST00000407977		708	aAg/aGg						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15281283	15281283	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	15	240	0	ENST00000263388.2:c.4973T>C	p.Leu1658Pro	p.L1658P	ENST00000263388	NM_000435.2	1658	cTc/cCc						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9538372	9538372	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	49	320	0	ENST00000353224.5:c.1626A>C	p.Glu542Asp	p.E542D	ENST00000353224	NM_177990.2	542	gaA/gaC						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44929269	44929269	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	68	328	0	ENST00000377967.4:c.2369A>C	p.Asn790Thr	p.N790T	ENST00000377967	NM_021140.2	790	aAc/aCc						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53240764	53240764	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	52	409	0	ENST00000375401.3:c.1316A>C	p.Glu439Ala	p.E439A	ENST00000375401	NM_004187.3	439	gAg/gCg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	52	477	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1289	276	431	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55964310	55964310	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	33	504	0	ENST00000263923.4:c.2503A>G	p.Lys835Glu	p.K835E	ENST00000263923	NM_002253.2	835	Aag/Gag						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187557327	187557327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	53	524	1	ENST00000441802.2:c.4035G>T	p.Trp1345Cys	p.W1345C	ENST00000441802	NM_005245.3	1345	tgG/tgT						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180047993	180047993	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3129	470	426	0	ENST00000261937.6:c.2182G>C	p.Asp728His	p.D728H	ENST00000261937	NM_182925.4	728	Gac/Cac						NEWRECORD																																																																									
HLA-A	3105	MSKCC	GRCh37	6	29910377	29910377	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2844	227	438	0	ENST00000376809.5:c.47C>A	p.Ala16Asp	p.A16D	ENST00000376809	NM_002116.7	16	gCc/gAc						NEWRECORD																																																																									
MAX	4149	MSKCC	GRCh37	14	65560499	65560499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	41	535	1	ENST00000358664.4:c.98G>T	p.Arg33Leu	p.R33L	ENST00000358664	NM_002382.4	33	cGa/cTa						NEWRECORD																																																																									
RAD51	5888	MSKCC	GRCh37	15	41022099	41022099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	112	555	0	ENST00000267868.3:c.823G>A	p.Gly275Arg	p.G275R	ENST00000267868	NM_002875.4	275	Gga/Aga						NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14041750	14041750	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	75	440	0	ENST00000311895.7:c.2297C>A	p.Pro766His	p.P766H	ENST00000311895	NM_005236.2	766	cCt/cAt						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9523334	9523334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	78	593	3	ENST00000353224.5:c.1903G>A	p.Glu635Lys	p.E635K	ENST00000353224	NM_177990.2	635	Gaa/Aaa						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1335	178	625	0	ENST00000329236.7:c.1459+1G>A		p.X487_splice	ENST00000329236	NM_001204466.1	487							NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100626635	100626635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	131	676	1	ENST00000308731.7:c.295C>A	p.Pro99Thr	p.P99T	ENST00000308731	NM_000061.2	99	Cct/Act						NEWRECORD																																																																									
XIAP	331	MSKCC	GRCh37	X	123022568	123022568	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	52	489	1	ENST00000355640.3:c.977G>T	p.Gly326Val	p.G326V	ENST00000355640		326	gGg/gTg						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81372693	81372694	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	69	511	0	ENST00000222390.5:c.840_841delinsTT	p.Trp280_Glu281delinsCysTer	p.W280_E281delinsC*	ENST00000222390	NM_000601.4	280	tgGGag/tgTTag						NEWRECORD																																																																									
H3F3C	440093	MSKCC	GRCh37	12	31945049	31945050	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3298	374	640	3	ENST00000340398.3:c.51_52delinsAA	p.Arg18Ser	p.R18S	ENST00000340398	NM_001013699.2	17	ccCCgc/ccAAgc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	278	359	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
SH2B3	10019	MSKCC	GRCh37	12	111886006	111886006	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	280	710	0	ENST00000341259.2:c.1628A>C	p.Glu543Ala	p.E543A	ENST00000341259	NM_005475.2	543	gAg/gCg						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89348955	89348955	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	266	715	0	ENST00000301030.4:c.3995A>G	p.Asp1332Gly	p.D1332G	ENST00000301030	NM_001256183.1	1332	gAc/gGc						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66766067	66766067	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	190	448	0	ENST00000374690.3:c.1079A>T	p.Gln360Leu	p.Q360L	ENST00000374690	NM_000044.3	360	cAg/cTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578485	7578485	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	662	446	0	ENST00000269305.4:c.445del	p.Ser149ProfsTer21	p.S149Pfs*21	ENST00000269305	NM_001126112.2	149	Tcc/cc						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0006889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	220	379	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0006889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	446	511	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0006889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	185	304	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175182	112175182	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	124	240	0	ENST00000257430.4:c.3892del	p.Ser1298LeufsTer7	p.S1298Lfs*7	ENST00000257430	NM_000038.5	1297	gaT/ga						NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36933539	36933539	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148104401		P-0006889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	356	577	1	ENST00000361632.4:c.1748G>A	p.Arg583His	p.R583H	ENST00000361632		583	cGt/cAt						NEWRECORD																																																																									
MUTYH	4595	MSKCC	GRCh37	1	45798118	45798118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200495564		P-0006889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	203	287	0	ENST00000372115.3:c.691C>T	p.Arg231Cys	p.R231C	ENST00000372115	NM_001048171.1	231	Cgt/Tgt						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117724421	117724421	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	450	508	0	ENST00000368508.3:c.458A>G	p.Tyr153Cys	p.Y153C	ENST00000368508	NM_002944.2	153	tAt/tGt						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95562365	95562365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	12	498	0	ENST00000343455.3:c.4892C>T	p.Ser1631Phe	p.S1631F	ENST00000343455	NM_177438.2	1631	tCt/tTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	17	212	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0008446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	9	185	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			30	8	402	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0005252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			33	15	433	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602488	10602488	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			26	43	405	0	ENST00000171111.5:c.1090G>T	p.Gly364Cys	p.G364C	ENST00000171111	NM_203500.1	364	Ggc/Tgc						NEWRECORD																																																																									
VTCN1	79679	MSKCC	GRCh37	1	117699385	117699385	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	17	529	0	ENST00000369458.3:c.256G>T	p.Gly86Cys	p.G86C	ENST00000369458	NM_024626.3	86	Ggc/Tgc						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25471018	25471018	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	26	504	0	ENST00000264709.3:c.743A>G	p.Gln248Arg	p.Q248R	ENST00000264709	NM_175629.2	248	cAg/cGg						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187629366	187629366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			21	16	574	0	ENST00000441802.2:c.1616G>C	p.Arg539Pro	p.R539P	ENST00000441802	NM_005245.3	539	cGt/cCt						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32168967	32168967	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	13	402	0	ENST00000375023.3:c.4066G>C	p.Asp1356His	p.D1356H	ENST00000375023	NM_004557.3	1356	Gac/Cac						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	427527	427527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			24	22	536	0	ENST00000399788.2:c.2642G>T	p.Gly881Val	p.G881V	ENST00000399788	NM_001042603.1	881	gGc/gTc						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49443468	49443468	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			35	13	273	0	ENST00000301067.7:c.3903A>T	p.Lys1301Asn	p.K1301N	ENST00000301067	NM_003482.3	1301	aaA/aaT						NEWRECORD																																																																									
HNF1A	6927	MSKCC	GRCh37	12	121435372	121435372	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201811844		P-0005252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	11	447	0	ENST00000257555.6:c.1405C>T	p.His469Tyr	p.H469Y	ENST00000257555		469	Cac/Tac						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9561202	9561202	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0005252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			29	11	485	0	ENST00000353224.5:c.580A>T	p.Arg194Ter	p.R194*	ENST00000353224	NM_177990.2	194	Aga/Tga						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31379461	31379461	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			38	10	533	0	ENST00000328111.2:c.868G>T	p.Ala290Ser	p.A290S	ENST00000328111	NM_006892.3	290	Gcc/Tcc						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76939705	76939705	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			27	33	646	0	ENST00000373344.5:c.1043T>A	p.Val348Glu	p.V348E	ENST00000373344	NM_000489.3	348	gTg/gAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0005189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	92	498	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0005189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	107	389	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72821421	72821421	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	63	606	0	ENST00000268489.5:c.10754C>G	p.Ser3585Cys	p.S3585C	ENST00000268489	NM_006885.3	3585	tCt/tGt						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5222730	5222730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	51	157	0	ENST00000357368.4:c.3073G>A	p.Val1025Ile	p.V1025I	ENST00000357368	NM_002850.3	1025	Gtc/Atc						NEWRECORD																																																																									
PIK3R2	5296	MSKCC	GRCh37	19	18273219	18273219	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	131	514	0	ENST00000222254.8:c.1012G>A	p.Glu338Lys	p.E338K	ENST00000222254	NM_005027.3	338	Gag/Aag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173762	112173765	+	frameshift_variant	Frame_Shift_Del	DEL	CATA	CATA	ATT			P-0005189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	44	441	0	ENST00000257430.4:c.2471_2474delinsATT	p.Pro824HisfsTer3	p.P824Hfs*3	ENST00000257430	NM_000038.5	824	cCATAt/cATTt						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89528621	89528621	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780470195		P-0006370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	277	327	2	ENST00000336596.2:c.2921C>T	p.Thr974Met	p.T974M	ENST00000336596	NM_005233.5	974	aCg/aTg						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3779662	3779662	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	39	322	1	ENST00000262367.5:c.5386C>T	p.Gln1796Ter	p.Q1796*	ENST00000262367	NM_004380.2	1796	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	464	334	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0007226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	1959	486	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67482843	67482843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	837	358	0	ENST00000327367.4:c.1247C>T	p.Ser416Phe	p.S416F	ENST00000327367	NM_005902.3	416	tCc/tTc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173582	112173582	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0007226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	304	394	0	ENST00000257430.4:c.2291T>A	p.Leu764Ter	p.L764*	ENST00000257430	NM_000038.5	764	tTa/tAa						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81888168	81888168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	727	546	2	ENST00000359376.3:c.313G>A	p.Val105Ile	p.V105I	ENST00000359376	NM_002661.3	105	Gtc/Atc						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47044962	47044962	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	34	245	0	ENST00000329236.7:c.2054T>G	p.Leu685Arg	p.L685R	ENST00000329236	NM_001204466.1	685	cTc/cGc						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41513662	41513669	+	frameshift_variant	Frame_Shift_Del	DEL	ATCAAGTC	ATCAAGTC	-			P-0007226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	352	559	0	ENST00000263253.7:c.568_575del	p.Gln190GlufsTer29	p.Q190Efs*29	ENST00000263253	NM_001429.3	189	aATCAAGTC/a						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	159	437	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101867538	101867546	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-			P-0006123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			34	10	23	0	ENST00000374994.4:c.70_78delGCGGCGGCG	p.Ala24_Ala26del	p.A24_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCGGCg/ctg						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151875096	151875096	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0006123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	29	136	0	ENST00000262189.6:c.7443-1G>C		p.X2481_splice	ENST00000262189	NM_170606.2	2481							NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108216552	108216553	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0006123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	155	628	0	ENST00000278616.4:c.8502_8503del	p.Phe2834LeufsTer13	p.F2834Lfs*13	ENST00000278616	NM_000051.3	2834	tTC/t						NEWRECORD																																																																									
TNFAIP3	7128	MSKCC	GRCh37	6	138198280	138198283	+	frameshift_variant	Frame_Shift_Del	DEL	GACA	GACA	-			P-0000098-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	111	302	0	ENST00000237289.4:c.875_878del	p.Thr292IlefsTer6	p.T292Ifs*6	ENST00000237289	NM_001270507.1	291	ttGACA/tt						NEWRECORD																																																																									
FLCN	201163	MSKCC	GRCh37	17	17127319	17127319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	183	484	0	ENST00000285071.4:c.535C>T	p.Arg179Trp	p.R179W	ENST00000285071	NM_144997.5	179	Cgg/Tgg						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56440661	56440661	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	195	565	2	ENST00000407977.2:c.557T>C	p.Ile186Thr	p.I186T	ENST00000407977		186	aTt/aCt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220370	1220371	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0004737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	213	480	0	ENST00000326873.7:c.465-2_465-1del		p.X155_splice	ENST00000326873	NM_000455.4	155							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	29	601	0	ENST00000269305.4:c.853G>T	p.Glu285Ter	p.E285*	ENST00000269305	NM_001126112.2	285	Gag/Tag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0008141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	261	223	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs770776262		P-0008141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	292	364	0	ENST00000269305.4:c.321C>A	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taA						NEWRECORD																																																																									
MCL1	4170	MSKCC	GRCh37	1	150550952	150550952	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	62	118	0	ENST00000369026.2:c.704T>A	p.Leu235Gln	p.L235Q	ENST00000369026	NM_021960.4	235	cTg/cAg						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212252690	212252690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	191	367	0	ENST00000342788.4:c.3163G>T	p.Ala1055Ser	p.A1055S	ENST00000342788	NM_005235.2	1055	Gcc/Tcc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0005858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1490	551	703	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0005858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	1044	637	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1218	543	460	1	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0005858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1528	477	646	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857925	9857925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1595	397	507	0	ENST00000330684.3:c.3476G>A	p.Arg1159His	p.R1159H	ENST00000330684	NM_001134407.1	1159	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173378	112173378	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1621	500	709	0	ENST00000257430.4:c.2087A>T	p.Glu696Val	p.E696V	ENST00000257430	NM_000038.5	696	gAa/gTa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	703	559	2	ENST00000257430.4:c.4199del	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1290	145	454	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89468488	89468488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	58	392	0	ENST00000336596.2:c.2022G>T	p.Met674Ile	p.M674I	ENST00000336596	NM_005233.5	674	atG/atT						NEWRECORD																																																																									
MUTYH	4595	MSKCC	GRCh37	1	45799220	45799220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	95	321	0	ENST00000372115.3:c.171G>T	p.Gln57His	p.Q57H	ENST00000372115	NM_001048171.1	57	caG/caT						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162729662	162729662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	82	381	0	ENST00000367921.3:c.748G>T	p.Val250Leu	p.V250L	ENST00000367921	NM_006182.2	250	Gtg/Ttg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178922372	178922372	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	125	362	0	ENST00000263967.3:c.1141C>G	p.Pro381Ala	p.P381A	ENST00000263967	NM_006218.2	381	Ccc/Gcc						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187532590	187532590	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	72	385	0	ENST00000441802.2:c.9803C>G	p.Ser3268Ter	p.S3268*	ENST00000441802	NM_005245.3	3268	tCa/tGa						NEWRECORD																																																																									
FYN	2534	MSKCC	GRCh37	6	112020778	112020778	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1700	201	621	0	ENST00000368678.4:c.793C>A	p.Arg265Ser	p.R265S	ENST00000368678		265	Cgt/Agt						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41729901	41729901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1630	96	632	1	ENST00000242208.4:c.628G>A	p.Val210Ile	p.V210I	ENST00000242208	NM_002192.2	210	Gta/Ata						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41729975	41729975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1737	94	602	1	ENST00000242208.4:c.554G>T	p.Ser185Ile	p.S185I	ENST00000242208	NM_002192.2	185	aGc/aTc						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118363928	118363928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1228	78	389	0	ENST00000534358.1:c.5161G>A	p.Gly1721Arg	p.G1721R	ENST00000534358	NM_005933.3	1721	Ggg/Agg						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28644750	28644750	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	45	319	1	ENST00000241453.7:c.44-1G>C		p.X15_splice	ENST00000241453	NM_004119.2	15							NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220488	1220488	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	95	346	0	ENST00000326873.7:c.581A>G	p.Asp194Gly	p.D194G	ENST00000326873	NM_000455.4	194	gAc/gGc						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11114057	11114057	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	156	504	0	ENST00000344626.4:c.1985C>A	p.Ser662Ter	p.S662*	ENST00000344626	NM_003072.3	662	tCa/tAa						NEWRECORD																																																																									
TOP1	7150	MSKCC	GRCh37	20	39746878	39746878	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	59	205	0	ENST00000361337.2:c.1892A>G	p.Asn631Ser	p.N631S	ENST00000361337	NM_003286.2	631	aAc/aGc						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139396287	139396293	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCATC	CGGCATC	-			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	119	432	0	ENST00000277541.6:c.5545_5551del	p.Asp1849LeufsTer36	p.D1849Lfs*36	ENST00000277541	NM_017617.3	1849	GATGCCGct/ct						NEWRECORD																																																																									
EIF4A2	1974	MSKCC	GRCh37	3	186502855	186502855	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	621	582	1	ENST00000323963.5:c.313C>A	p.Leu105Ile	p.L105I	ENST00000323963		105	Cta/Ata						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66270110	66270110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	297	412	0	ENST00000273854.3:c.1772G>A	p.Gly591Asp	p.G591D	ENST00000273854	NM_004439.5	591	gGc/gAc						NEWRECORD																																																																									
SYK	6850	MSKCC	GRCh37	9	93627354	93627354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	396	407	0	ENST00000375746.1:c.821C>T	p.Pro274Leu	p.P274L	ENST00000375746	NM_001174167.1	274	cCa/cTa						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139392010	139392010	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	354	252	0	ENST00000277541.6:c.6181G>T	p.Glu2061Ter	p.E2061*	ENST00000277541	NM_017617.3	2061	Gag/Tag						NEWRECORD																																																																									
CCND2	894	MSKCC	GRCh37	12	4398053	4398053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	793	419	0	ENST00000261254.3:c.617G>A	p.Ser206Asn	p.S206N	ENST00000261254	NM_001759.3	206	aGt/aAt						NEWRECORD																																																																									
CCND2	894	MSKCC	GRCh37	12	4409154	4409154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	714	385	1	ENST00000261254.3:c.849C>A	p.Asp283Glu	p.D283E	ENST00000261254	NM_001759.3	283	gaC/gaA						NEWRECORD																																																																									
IGF1	3479	MSKCC	GRCh37	12	102811603	102811603	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	429	383	0	ENST00000307046.8:c.581G>T	p.Gly194Val	p.G194V	ENST00000307046	NM_001111285.1	194	gGa/gTa						NEWRECORD																																																																									
IGF1	3479	MSKCC	GRCh37	12	102813444	102813444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	338	289	1	ENST00000307046.8:c.245G>A	p.Ser82Asn	p.S82N	ENST00000307046	NM_001111285.1	82	aGc/aAc						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	29001398	29001398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	330	308	0	ENST00000282397.4:c.1334C>G	p.Pro445Arg	p.P445R	ENST00000282397	NM_002019.4	445	cCa/cGa						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48916851	48916851	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	174	200	0	ENST00000267163.4:c.380+1G>T		p.X127_splice	ENST00000267163	NM_000321.2	127							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	676	488	1	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41244444	41244444	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	380	299	0	ENST00000357654.3:c.3104T>A	p.Val1035Asp	p.V1035D	ENST00000357654	NM_007294.3	1035	gTt/gAt						NEWRECORD																																																																									
HOXB13	10481	MSKCC	GRCh37	17	46805949	46805949	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	349	334	0	ENST00000290295.7:c.7C>A	p.Pro3Thr	p.P3T	ENST00000290295	NM_006361.5	3	Ccc/Acc						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11145764	11145764	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	670	445	0	ENST00000344626.4:c.4126G>T	p.Glu1376Ter	p.E1376*	ENST00000344626	NM_003072.3	1376	Gag/Tag						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31380506	31380506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	585	440	0	ENST00000328111.2:c.996G>A	p.Met332Ile	p.M332I	ENST00000328111	NM_006892.3	332	atG/atA						NEWRECORD																																																																									
SRC	6714	MSKCC	GRCh37	20	36028594	36028594	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	1159	430	1	ENST00000358208.4:c.936G>C	p.Gln312His	p.Q312H	ENST00000358208		312	caG/caC						NEWRECORD																																																																									
CRKL	1399	MSKCC	GRCh37	22	21272326	21272326	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	235	416	0	ENST00000354336.3:c.104T>C	p.Met35Thr	p.M35T	ENST00000354336	NM_005207.3	35	aTg/aCg						NEWRECORD																																																																									
CHEK2	11200	MSKCC	GRCh37	22	29085135	29085135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			30	24	12	0	ENST00000328354.6:c.1530G>T	p.Gln510His	p.Q510H	ENST00000328354	NM_007194.3	510	caG/caT						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143044462	143044463	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	340	362	0	ENST00000262992.4:c.1999_2000delinsAT	p.Gly667Ile	p.G667I	ENST00000262992	NM_001101669.1	667	GGa/ATa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0009981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	514	445	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212251604	212251604	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	90	400	0	ENST00000342788.4:c.3455C>A	p.Thr1152Asn	p.T1152N	ENST00000342788	NM_005235.2	1152	aCt/aAt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108168053	108168053	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs55870064		P-0009981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	230	531	0	ENST00000278616.4:c.4949A>G	p.Asn1650Ser	p.N1650S	ENST00000278616	NM_000051.3	1650	aAt/aGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	398	506	0	ENST00000269305.4:c.455C>G	p.Pro152Arg	p.P152R	ENST00000269305	NM_001126112.2	152	cCg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0004893-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	247	473	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21620093	21620093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004893-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	60	362	0	ENST00000382592.4:c.73G>T	p.Gly25Trp	p.G25W	ENST00000382592	NM_014572.2	25	Ggg/Tgg						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27099124	27099124	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0001943-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			236	29	398	0	ENST00000324856.7:c.3539+1G>T		p.X1180_splice	ENST00000324856	NM_006015.4	1180							NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47108569	47108569	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001943-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			237	46	305	0	ENST00000409792.3:c.6100G>T	p.Glu2034Ter	p.E2034*	ENST00000409792	NM_014159.6	2034	Gaa/Taa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187542782	187542782	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001943-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			223	42	456	0	ENST00000441802.2:c.4958T>G	p.Val1653Gly	p.V1653G	ENST00000441802	NM_005245.3	1653	gTg/gGg						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27102199	27102199	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0004843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	197	438	0	ENST00000324856.7:c.5124+1G>C		p.X1708_splice	ENST00000324856	NM_006015.4	1708							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0007359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	19	448	2	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			36	11	456	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0005793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	16	460	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0009272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	204	466	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	167	436	0	ENST00000288602.6:c.1397G>C	p.Gly466Ala	p.G466A	ENST00000288602	NM_004333.4	466	gGa/gCa						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185155255	185155255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	143	377	1	ENST00000265026.3:c.496G>T	p.Glu166Ter	p.E166*	ENST00000265026	NM_004721.4	166	Gag/Tag						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187542665	187542665	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	168	591	0	ENST00000441802.2:c.5075A>G	p.His1692Arg	p.H1692R	ENST00000441802	NM_005245.3	1692	cAt/cGt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55272957	55272957	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	134	388	1	ENST00000275493.2:c.3280A>T	p.Asn1094Tyr	p.N1094Y	ENST00000275493	NM_005228.3	1094	Aac/Tac						NEWRECORD																																																																									
FGF3	2248	MSKCC	GRCh37	11	69633488	69633488	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	112	325	0	ENST00000334134.2:c.214G>C	p.Ala72Pro	p.A72P	ENST00000334134	NM_005247.2	72	Gcc/Ccc						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68849596	68849596	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	242	561	0	ENST00000261769.5:c.1499G>C	p.Gly500Ala	p.G500A	ENST00000261769	NM_004360.3	500	gGc/gCc						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89877420	89877420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	223	498	0	ENST00000389301.3:c.343G>T	p.Gly115Trp	p.G115W	ENST00000389301	NM_000135.2	115	Ggg/Tgg						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29557286	29557286	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	168	549	0	ENST00000358273.4:c.2999G>C	p.Arg1000Pro	p.R1000P	ENST00000358273	NM_001042492.2	1000	cGt/cCt						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76874439	76874439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	198	261	0	ENST00000373344.5:c.5283G>A	p.Met1761Ile	p.M1761I	ENST00000373344	NM_000489.3	1761	atG/atA						NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100611089	100611089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	179	343	0	ENST00000308731.7:c.1517G>T	p.Cys506Phe	p.C506F	ENST00000308731	NM_000061.2	506	tGt/tTt						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11098370	11098370	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	203	605	2	ENST00000344626.4:c.888del	p.Ser297AlafsTer6	p.S297Afs*6	ENST00000344626	NM_003072.3	296	acG/ac						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187522482	187522482	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs79448797		P-0008810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	200	626	0	ENST00000441802.2:c.11581A>G	p.Thr3861Ala	p.T3861A	ENST00000441802	NM_005245.3	3861	Aca/Gca						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72828221	72828222	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0008810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1218	309	836	0	ENST00000268489.5:c.8359_8360del	p.Pro2787CysfsTer3	p.P2787Cfs*3	ENST00000268489	NM_006885.3	2787	CCt/t						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72984744	72984744	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	456	738	0	ENST00000268489.5:c.2840del	p.Cys947SerfsTer19	p.C947Sfs*19	ENST00000268489	NM_006885.3	947	tGc/tc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0009745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	172	260	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt						NEWRECORD																																																																									
FGFR3	2261	MSKCC	GRCh37	4	1806119	1806119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1415	314	712	2	ENST00000260795.2:c.1138G>A	p.Gly380Arg	p.G380R	ENST00000260795		380	Ggg/Agg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0009302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	37	200	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa						NEWRECORD																																																																									
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0009302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	124	662	7	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175366	112175366	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	36	236	0	ENST00000257430.4:c.4075A>T	p.Lys1359Ter	p.K1359*	ENST00000257430	NM_000038.5	1359	Aaa/Taa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	164	370	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	53	369	0	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33							NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56440741	56440741	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	34	470	0	ENST00000407977.2:c.477G>A	p.Trp159Ter	p.W159*	ENST00000407977		159	tgG/tgA						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180047706	180047706	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	77	574	0	ENST00000261937.6:c.2309A>C	p.Asp770Ala	p.D770A	ENST00000261937	NM_182925.4	770	gAt/gCt						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10252864	10252864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	46	463	0	ENST00000340748.4:c.3101G>A	p.Ser1034Asn	p.S1034N	ENST00000340748		1034	aGc/aAc						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600507	10600507	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	43	441	0	ENST00000171111.5:c.1348T>C	p.Trp450Arg	p.W450R	ENST00000171111	NM_203500.1	450	Tgg/Cgg						NEWRECORD																																																																									
NF2	4771	MSKCC	GRCh37	22	30038259	30038259	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	131	561	0	ENST00000338641.4:c.432C>G	p.Tyr144Ter	p.Y144*	ENST00000338641	NM_000268.3	144	taC/taG						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0009443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	16	217	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0009443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	160	275	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30713757	30713757	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	183	155	0	ENST00000359013.4:c.1157T>G	p.Leu386Arg	p.L386R	ENST00000359013	NM_001024847.2	386	cTc/cGc						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	348230	348230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	89	141	0	ENST00000262320.3:c.1276G>A	p.Asp426Asn	p.D426N	ENST00000262320	NM_003502.3	426	Gat/Aat						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974699	21974699	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	103	289	0	ENST00000304494.5:c.128del	p.Ser43IlefsTer10	p.S43Ifs*10	ENST00000304494	NM_000077.4	43	aGt/at						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577147	7577149	+	frameshift_variant	Frame_Shift_Del	DEL	AGA	AGA	T			P-0009443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	158	299	0	ENST00000269305.4:c.789_791delinsA	p.Asn263LysfsTer8	p.N263Kfs*8	ENST00000269305	NM_001126112.2	263	aaTCTa/aaAa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106951	27106951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	130	291	1	ENST00000324856.7:c.6562C>T	p.Gln2188Ter	p.Q2188*	ENST00000324856	NM_006015.4	2188	Cag/Tag						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57865143	57865143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			5207	428	1024	3	ENST00000228682.2:c.2620C>A	p.Pro874Thr	p.P874T	ENST00000228682	NM_005269.2	874	Cct/Act						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57865294	57865294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			4538	307	863	0	ENST00000228682.2:c.2771C>T	p.Ser924Phe	p.S924F	ENST00000228682	NM_005269.2	924	tCc/tTc						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57865652	57865652	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			4906	339	1021	0	ENST00000228682.2:c.3129C>G	p.Asp1043Glu	p.D1043E	ENST00000228682	NM_005269.2	1043	gaC/gaG						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57865707	57865707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			4573	320	1007	0	ENST00000228682.2:c.3184C>T	p.Pro1062Ser	p.P1062S	ENST00000228682	NM_005269.2	1062	Cct/Tct						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29685497	29685497	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0008764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	128	266	0	ENST00000358273.4:c.7971-1G>A		p.X2657_splice	ENST00000358273	NM_001042492.2	2657							NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76937687	76937687	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	307	355	0	ENST00000373344.5:c.3061G>T	p.Glu1021Ter	p.E1021*	ENST00000373344	NM_000489.3	1021	Gag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	63	319	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151845366	151845366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	59	282	1	ENST00000262189.6:c.13646G>A	p.Arg4549His	p.R4549H	ENST00000262189	NM_170606.2	4549	cGc/cAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578275	7578293	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGGAGGGGCCAGACCTAA	GAGGAGGGGCCAGACCTAA	-			P-0009091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	57	366	0	ENST00000269305.4:c.560-4_574del		p.X187_splice	ENST00000269305	NM_001126112.2	187							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	33	446	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0009483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	36	394	1	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt						NEWRECORD																																																																									
RAD54L	8438	MSKCC	GRCh37	1	46715720	46715720	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	62	675	0	ENST00000371975.4:c.139T>A	p.Phe47Ile	p.F47I	ENST00000371975	NM_003579.3	47	Ttc/Atc						NEWRECORD																																																																									
FGFR4	2264	MSKCC	GRCh37	5	176523157	176523157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	46	457	1	ENST00000292408.4:c.1921G>A	p.Asp641Asn	p.D641N	ENST00000292408	NM_213647.1	641	Gac/Aac						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140481418	140481418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	35	556	1	ENST00000288602.6:c.1390G>A	p.Gly464Arg	p.G464R	ENST00000288602	NM_004333.4	464	Gga/Aga						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	41988428	41988428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1230	68	843	3	ENST00000219905.7:c.1220C>T	p.Thr407Ile	p.T407I	ENST00000219905	NM_001164273.1	407	aCa/aTa						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602763	10602763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	43	456	2	ENST00000171111.5:c.815G>A	p.Arg272His	p.R272H	ENST00000171111	NM_203500.1	272	cGc/cAc						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76845319	76845319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	62	735	0	ENST00000373344.5:c.6202C>A	p.Pro2068Thr	p.P2068T	ENST00000373344	NM_000489.3	2068	Ccc/Acc						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123176433	123176433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	86	615	0	ENST00000218089.9:c.400G>A	p.Glu134Lys	p.E134K	ENST00000218089	NM_001042749.1	134	Gaa/Aaa						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29587467	29587470	+	frameshift_variant	Frame_Shift_Del	DEL	TGCT	TGCT	-			P-0009483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	61	442	0	ENST00000358273.4:c.4516_4519del	p.Ala1506TyrfsTer67	p.A1506Yfs*67	ENST00000358273	NM_001042492.2	1504	gTGCTt/gt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55233024	55233024	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144943614		P-0008179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	444	467	1	ENST00000275493.2:c.1774G>A	p.Val592Ile	p.V592I	ENST00000275493	NM_005228.3	592	Gtc/Atc						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	463304	463304	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	445	647	0	ENST00000399788.2:c.967C>G	p.Leu323Val	p.L323V	ENST00000399788	NM_001042603.1	323	Cta/Gta						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	527	399	0	ENST00000269305.4:c.733G>C	p.Gly245Arg	p.G245R	ENST00000269305	NM_001126112.2	245	Ggc/Cgc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0008285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	171	371	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	22	382	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52441422	52441422	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	118	470	0	ENST00000460680.1:c.430C>G	p.His144Asp	p.H144D	ENST00000460680	NM_004656.3	144	Cat/Gat						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112179392	112179392	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	107	529	0	ENST00000257430.4:c.8101C>G	p.Gln2701Glu	p.Q2701E	ENST00000257430	NM_000038.5	2701	Cag/Gag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	209	453	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11217290	11217290	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	147	592	1	ENST00000361445.4:c.4388A>T	p.Tyr1463Phe	p.Y1463F	ENST00000361445	NM_004958.3	1463	tAt/tTt						NEWRECORD																																																																									
FGF3	2248	MSKCC	GRCh37	11	69625390	69625390	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	62	495	0	ENST00000334134.2:c.403C>G	p.Arg135Gly	p.R135G	ENST00000334134	NM_005247.2	135	Cgg/Ggg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41100936	41100936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	61	390	1	ENST00000373198.4:c.1420G>A	p.Glu474Lys	p.E474K	ENST00000373198	NM_133170.3	474	Gag/Aag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004944-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			108	394	448	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0004944-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			115	638	383	2	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604764	48604766	+	inframe_deletion	In_Frame_Del	DEL	TAC	TAC	-			P-0004944-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			140	192	465	1	ENST00000342988.3:c.1586_1588del	p.Leu529_His530delinsTyr	p.L529_H530delinsY	ENST00000342988	NM_005359.5	529	tTACac/tac						NEWRECORD																																																																									
BCL6	604	MSKCC	GRCh37	3	187447384	187447384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780987785		P-0004944-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			991	54	383	0	ENST00000232014.4:c.809G>A	p.Arg270Gln	p.R270Q	ENST00000232014	NM_001130845.1	270	cGa/cAa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55223570	55223570	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004944-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			976	238	569	0	ENST00000275493.2:c.937G>T	p.Ala313Ser	p.A313S	ENST00000275493	NM_005228.3	313	Gcc/Tcc						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115109744	115109744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004944-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			894	317	530	0	ENST00000257566.3:c.2134G>A	p.Ala712Thr	p.A712T	ENST00000257566	NM_016569.3	712	Gcg/Acg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49424214	49424214	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004944-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			195	152	201	0	ENST00000301067.7:c.13848del	p.Ser4617ValfsTer23	p.S4617Vfs*23	ENST00000301067	NM_003482.3	4616	ctG/ct						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101900171	101900171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	43	153	0	ENST00000374994.4:c.605C>T	p.Ala202Val	p.A202V	ENST00000374994	NM_004612.2	202	gCg/gTg						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29445238	29445238	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	45	124	0	ENST00000389048.3:c.3487G>C	p.Asp1163His	p.D1163H	ENST00000389048	NM_004304.4	1163	Gat/Cat						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47677844	47677844	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	59	162	0	ENST00000347630.2:c.1021A>G	p.Met341Val	p.M341V	ENST00000347630	NM_001007230.1	341	Atg/Gtg						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63526126	63526126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	26	166	0	ENST00000307078.5:c.2500C>T	p.Arg834Trp	p.R834W	ENST00000307078	NM_004655.3	834	Cgg/Tgg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	298	421	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220717	1220717	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0009959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	209	419	0	ENST00000326873.7:c.734+1G>A		p.X245_splice	ENST00000326873	NM_000455.4	245							NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56493634	56493634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	269	524	1	ENST00000267101.3:c.2950C>T	p.Pro984Ser	p.P984S	ENST00000267101	NM_001982.3	984	Cct/Tct						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0008063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	29	364	1	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs786201057		P-0008063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	32	363	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg						NEWRECORD																																																																									
IRF4	3662	MSKCC	GRCh37	6	393199	393199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	29	423	2	ENST00000380956.4:c.47C>T	p.Ala16Val	p.A16V	ENST00000380956	NM_001195286.1	16	gCg/gTg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717608	89717608	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0008063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	20	330	0	ENST00000371953.3:c.635-2A>C		p.X212_splice	ENST00000371953	NM_000314.4	212							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398306	25398306	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	33	394	0	ENST00000256078.4:c.13A>G	p.Lys5Glu	p.K5E	ENST00000256078	NM_033360.2	5	Aaa/Gaa						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591910	48591910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	53	565	0	ENST00000342988.3:c.1073G>A	p.Gly358Glu	p.G358E	ENST00000342988	NM_005359.5	358	gGa/gAa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175529	112175535	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTAAG	TGGTAAG	-			P-0008063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	47	361	0	ENST00000257430.4:c.4241_4247del	p.Val1414AlafsTer3	p.V1414Afs*3	ENST00000257430	NM_000038.5	1413	aTGGTAAGt/at						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	374	273	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48593417	48593417	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	102	366	0	ENST00000342988.3:c.1168G>T	p.Glu390Ter	p.E390*	ENST00000342988	NM_005359.5	390	Gaa/Taa						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68853209	68853209	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	129	520	0	ENST00000261769.5:c.1592A>G	p.Asn531Ser	p.N531S	ENST00000261769	NM_004360.3	531	aAc/aGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	140	477	0	ENST00000269305.4:c.658T>A	p.Tyr220Asn	p.Y220N	ENST00000269305	NM_001126112.2	220	Tat/Aat						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99160428	99160428	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	59	361	0	ENST00000074304.5:c.907C>G	p.Leu303Val	p.L303V	ENST00000074304	NM_001134224.1	303	Ctc/Gtc						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16024477	16024477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	88	310	2	ENST00000268712.3:c.1741C>A	p.Arg581Ser	p.R581S	ENST00000268712	NM_006311.3	581	Cgt/Agt						NEWRECORD																																																																									
TMPRSS2	7113	MSKCC	GRCh37	21	42845341	42845341	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	48	314	1	ENST00000398585.3:c.921G>T	p.Gln307His	p.Q307H	ENST00000398585	NM_001135099.1	307	caG/caT						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16029315	16029421	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGTACTCCCTATATCTACAAAAATAAAAATAAAATAAAAATAAACATTTAACTTATTATATAACTAATTATTTAACTCACTTGGAGTCTTCTTTTTCATCTTTTTC	CTGTACTCCCTATATCTACAAAAATAAAAATAAAATAAAAATAAACATTTAACTTATTATATAACTAATTATTTAACTCACTTGGAGTCTTCTTTTTCATCTTTTTC	-			P-0006283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	20	77	0	ENST00000268712.3:c.1609_1634+81del		p.X537_splice	ENST00000268712	NM_006311.3	537							NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175746	112175746	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	27	453	0	ENST00000257430.4:c.4455del	p.Asp1486IlefsTer21	p.D1486Ifs*21	ENST00000257430	NM_000038.5	1485	gcT/gc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579344	7579345	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0006737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	108	604	3	ENST00000269305.4:c.342_343del	p.His115PhefsTer33	p.H115Ffs*33	ENST00000269305	NM_001126112.2	114	ttGCat/ttat						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174842	112174842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	122	451	0	ENST00000257430.4:c.3552del	p.Thr1185GlnfsTer80	p.T1185Qfs*80	ENST00000257430	NM_000038.5	1184	gCc/gc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	90	356	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0009965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	101	389	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0009965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	53	141	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	901	329	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243800977	243800977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1245	131	476	0	ENST00000263826.5:c.497G>A	p.Arg166Gln	p.R166Q	ENST00000263826	NM_005465.4	166	cGa/cAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	200	218	0	ENST00000269305.4:c.526T>G	p.Cys176Gly	p.C176G	ENST00000269305	NM_001126112.2	176	Tgc/Ggc						NEWRECORD																																																																									
RARA	5914	MSKCC	GRCh37	17	38512402	38512402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs5820346		P-0008953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	119	239	5	ENST00000254066.5:c.1319delC	p.Pro440ArgfsTer203	p.P440Rfs*203	ENST00000254066	NM_000964.3	438	gCc/gc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575055	48575056	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	CA			P-0008953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	141	355	0	ENST00000342988.3:c.250-1_250delinsCA		p.X84_splice	ENST00000342988	NM_005359.5	84							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			26	132	277	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
CTLA4	1493	MSKCC	GRCh37	2	204735602	204735602	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	64	178	0	ENST00000302823.3:c.403T>A	p.Tyr135Asn	p.Y135N	ENST00000302823	NM_005214.4	135	Tac/Aac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0009228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	313	290	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48028285	48028285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	107	308	0	ENST00000234420.5:c.3163G>A	p.Ala1055Thr	p.A1055T	ENST00000234420	NM_000179.2	1055	Gca/Aca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579573	7579573	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	326	270	0	ENST00000269305.4:c.114del	p.Ala39GlnfsTer5	p.A39Qfs*5	ENST00000269305	NM_001126112.2	38	caA/ca						NEWRECORD																																																																									
STAT5B	6777	MSKCC	GRCh37	17	40369393	40369393	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0009228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	466	768	0	ENST00000293328.3:c.1257+2T>C		p.X419_splice	ENST00000293328	NM_012448.3	419							NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005961-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	59	528	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
NEGR1	257194	MSKCC	GRCh37	1	72241873	72241873	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1252345844		P-0005961-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1275	72	785	2	ENST00000357731.5:c.517C>T	p.Arg173Ter	p.R173*	ENST00000357731	NM_173808.2	173	Cga/Tga						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692790	89692790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005961-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	35	294	0	ENST00000371953.3:c.274G>A	p.Asp92Asn	p.D92N	ENST00000371953	NM_000314.4	92	Gac/Aac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0005961-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	103	456	1	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	116	329	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	19	342	0	ENST00000269305.4:c.400T>G	p.Phe134Val	p.F134V	ENST00000269305	NM_001126112.2	134	Ttt/Gtt						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56178622	56178622	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	160	325	0	ENST00000399503.3:c.3595C>T	p.Gln1199Ter	p.Q1199*	ENST00000399503	NM_005921.1	1199	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0006575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	516	494	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	78	242	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178947199	178947199	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	110	332	0	ENST00000263967.3:c.2635C>T	p.Gln879Ter	p.Q879*	ENST00000263967	NM_006218.2	879	Cag/Tag						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187521499	187521499	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	76	202	0	ENST00000441802.2:c.11656C>A	p.Leu3886Met	p.L3886M	ENST00000441802	NM_005245.3	3886	Ctg/Atg						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139391610	139391610	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	160	346	0	ENST00000277541.6:c.6581C>G	p.Ser2194Cys	p.S2194C	ENST00000277541	NM_017617.3	2194	tCc/tGc						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15298120	15298120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	398	448	0	ENST00000263388.2:c.1636G>A	p.Val546Met	p.V546M	ENST00000263388	NM_000435.2	546	Gtg/Atg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175412	112175412	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	222	243	0	ENST00000257430.4:c.4122del	p.Glu1374AspfsTer41	p.E1374Dfs*41	ENST00000257430	NM_000038.5	1374	gAa/ga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0006372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	18	499	1	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398286	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0006372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	40	397	0	ENST00000256078.4:c.33_34delinsCT	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	11	gcTGgt/gcCTgt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	281	230	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220644	1220644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	110	578	1	ENST00000326873.7:c.662C>T	p.Pro221Leu	p.P221L	ENST00000326873	NM_000455.4	221	cCg/cTg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	104	298	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89685287	89685287	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	35	72	0	ENST00000371953.3:c.182A>G	p.His61Arg	p.H61R	ENST00000371953	NM_000314.4	61	cAt/cGt						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180057627	180057627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	130	844	0	ENST00000261937.6:c.328G>A	p.Val110Ile	p.V110I	ENST00000261937	NM_182925.4	110	Gtc/Atc						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56438208	56438208	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0009299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	53	539	0	ENST00000407977.2:c.785C>G	p.Ser262Ter	p.S262*	ENST00000407977		262	tCa/tGa						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48573657	48573657	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	51	50	0	ENST00000342988.3:c.241A>G	p.Arg81Gly	p.R81G	ENST00000342988	NM_005359.5	81	Agg/Ggg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578461	7578473	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGGGTGCCGGG	CGCGGGTGCCGGG	-			P-0009299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	60	498	0	ENST00000269305.4:c.457_469del	p.Pro153SerfsTer13	p.P153Sfs*13	ENST00000269305	NM_001126112.2	153	CCCGGCACCCGCGtc/tc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0004990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	69	279	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156843448	156843448	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	33	188	0	ENST00000524377.1:c.874A>T	p.Thr292Ser	p.T292S	ENST00000524377	NM_002529.3	292	Acg/Tcg						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180048661	180048661	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	18	247	0	ENST00000261937.6:c.1901C>A	p.Ala634Asp	p.A634D	ENST00000261937	NM_182925.4	634	gCc/gAc						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106513255	106513255	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	40	266	0	ENST00000359195.3:c.2159A>C	p.Tyr720Ser	p.Y720S	ENST00000359195	NM_002649.2	720	tAt/tCt						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100922217	100922217	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	20	448	0	ENST00000325455.5:c.2295G>C	p.Trp765Cys	p.W765C	ENST00000325455	NM_001202474.3	765	tgG/tgC						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67645288	67645288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	28	304	0	ENST00000264010.4:c.553C>T	p.Pro185Ser	p.P185S	ENST00000264010	NM_006565.3	185	Ccc/Tcc						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63412370	63412370	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	28	424	1	ENST00000330258.3:c.797C>A	p.Ala266Asp	p.A266D	ENST00000330258	NM_152424.3	266	gCc/gAc						NEWRECORD																																																																									
ERRFI1	54206	MSKCC	GRCh37	1	8074123	8074235	+	frameshift_variant	Frame_Shift_Del	DEL	GTATCTGAGCTAGTTAGGAATTCCACCTCACAGTCTGTGTCATCCAGAGAGAGGGCTTCAGAGATTGGCAACGGTGGAAGAGGCCTAGAACCCCGTTCACAAAGAGGGGCACA	GTATCTGAGCTAGTTAGGAATTCCACCTCACAGTCTGTGTCATCCAGAGAGAGGGCTTCAGAGATTGGCAACGGTGGAAGAGGCCTAGAACCCCGTTCACAAAGAGGGGCACA	-			P-0004990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	48	495	0	ENST00000377482.5:c.424_536del	p.Cys142ArgfsTer11	p.C142Rfs*11	ENST00000377482	NM_018948.3	142	TGTGCCCCTCTTTGTGAACGGGGTTCTAGGCCTCTTCCACCGTTGCCAATCTCTGAAGCCCTCTCTCTGGATGACACAGACTGTGAGGTGGAATTCCTAACTAGCTCAGATACa/a						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0006640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	244	376	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
CUL3	8452	MSKCC	GRCh37	2	225400277	225400277	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	130	356	0	ENST00000264414.4:c.346A>G	p.Met116Val	p.M116V	ENST00000264414	NM_003590.4	116	Atg/Gtg						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56493802	56493802	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200017094		P-0006640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	104	313	0	ENST00000267101.3:c.3118C>T	p.Arg1040Trp	p.R1040W	ENST00000267101	NM_001982.3	1040	Cgg/Tgg						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56494012	56494012	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	163	324	0	ENST00000267101.3:c.3184C>G	p.Leu1062Val	p.L1062V	ENST00000267101	NM_001982.3	1062	Ctt/Gtt						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72832299	72832299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	127	918	4	ENST00000268489.5:c.4282G>A	p.Ala1428Thr	p.A1428T	ENST00000268489	NM_006885.3	1428	Gcc/Acc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0007148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	108	610	2	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005579-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	74	316	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0005579-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	66	558	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0006569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	41	428	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0006569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	23	493	1	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0006569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	29	306	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			795	562	358	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			308	241	124	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117609894	117609894	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs202153378		P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1050	321	617	0	ENST00000368508.3:c.6805C>T	p.Arg2269Ter	p.R2269*	ENST00000368508	NM_002944.2	2269	Cga/Tga						NEWRECORD																																																																									
PIK3R2	5296	MSKCC	GRCh37	19	18266845	18266845	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			620	167	243	0	ENST00000222254.8:c.156G>C	p.Gln52His	p.Q52H	ENST00000222254	NM_005027.3	52	caG/caC						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70352234	70352234	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1514	334	515	0	ENST00000374080.3:c.4261G>C	p.Glu1421Gln	p.E1421Q	ENST00000374080		1421	Gag/Cag						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115745	8115745	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1369	444	625	1	ENST00000346208.3:c.1091G>C	p.Arg364Thr	p.R364T	ENST00000346208		364	aGa/aCa						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11188064	11188064	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			490	181	256	0	ENST00000361445.4:c.6030G>T	p.Met2010Ile	p.M2010I	ENST00000361445	NM_004958.3	2010	atG/atT						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65303670	65303670	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1772	303	564	0	ENST00000342505.4:c.3085G>A	p.Glu1029Lys	p.E1029K	ENST00000342505	NM_002227.2	1029	Gaa/Aaa						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120466499	120466499	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1712	389	535	2	ENST00000256646.2:c.4620G>C	p.Glu1540Asp	p.E1540D	ENST00000256646	NM_024408.3	1540	gaG/gaC						NEWRECORD																																																																									
MSH2	4436	MSKCC	GRCh37	2	47707933	47707933	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			888	262	337	0	ENST00000233146.2:c.2557G>T	p.Glu853Ter	p.E853*	ENST00000233146	NM_000251.2	853	Gag/Tag						NEWRECORD																																																																									
REL	5966	MSKCC	GRCh37	2	61145528	61145528	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1289	73	310	0	ENST00000295025.8:c.641-1G>C		p.X214_splice	ENST00000295025	NM_002908.2	214							NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142281160	142281160	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1347	403	490	0	ENST00000350721.4:c.1084G>C	p.Glu362Gln	p.E362Q	ENST00000350721	NM_001184.3	362	Gaa/Caa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187534464	187534464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			643	226	383	0	ENST00000441802.2:c.9262G>A	p.Glu3088Lys	p.E3088K	ENST00000441802	NM_005245.3	3088	Gag/Aag						NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35876293	35876293	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1186	249	352	0	ENST00000303115.3:c.1085G>T	p.Gly362Val	p.G362V	ENST00000303115	NM_002185.3	362	gGa/gTa						NEWRECORD																																																																									
FGFR4	2264	MSKCC	GRCh37	5	176522551	176522551	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774571806		P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1186	257	454	0	ENST00000292408.4:c.1648G>A	p.Val550Met	p.V550M	ENST00000292408	NM_213647.1	550	Gtg/Atg						NEWRECORD																																																																									
EZH2	2146	MSKCC	GRCh37	7	148508765	148508765	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1155	277	415	0	ENST00000320356.2:c.1899C>G	p.Ile633Met	p.I633M	ENST00000320356	NM_004456.4	633	atC/atG						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8517851	8517851	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1620	347	557	0	ENST00000356435.5:c.1540G>C	p.Gly514Arg	p.G514R	ENST00000356435		514	Gga/Cga						NEWRECORD																																																																									
FANCC	2176	MSKCC	GRCh37	9	98009746	98009746	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1471	319	557	1	ENST00000289081.3:c.218A>G	p.Lys73Arg	p.K73R	ENST00000289081	NM_000136.2	73	aAa/aGa						NEWRECORD																																																																									
FANCC	2176	MSKCC	GRCh37	9	98009780	98009780	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1215	262	470	0	ENST00000289081.3:c.184G>C	p.Glu62Gln	p.E62Q	ENST00000289081	NM_000136.2	62	Gaa/Caa						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70446212	70446212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			882	310	470	0	ENST00000373644.4:c.5152G>A	p.Glu1718Lys	p.E1718K	ENST00000373644	NM_030625.2	1718	Gag/Aag						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56486595	56486595	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1074	310	405	0	ENST00000267101.3:c.1174G>T	p.Glu392Ter	p.E392*	ENST00000267101	NM_001982.3	392	Gag/Tag						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133248872	133248872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			994	265	411	0	ENST00000320574.5:c.1723G>A	p.Glu575Lys	p.E575K	ENST00000320574	NM_006231.2	575	Gag/Aag						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28578246	28578246	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			824	338	519	0	ENST00000241453.7:c.2925C>A	p.Phe975Leu	p.F975L	ENST00000241453	NM_004119.2	975	ttC/ttA						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73346932	73346932	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			962	350	445	1	ENST00000377767.4:c.1285G>T	p.Glu429Ter	p.E429*	ENST00000377767	NM_014953.3	429	Gaa/Taa						NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14029088	14029088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1085	231	262	0	ENST00000311895.7:c.1299G>T	p.Leu433Phe	p.L433F	ENST00000311895	NM_005236.2	433	ttG/ttT						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29552209	29552209	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			913	325	439	0	ENST00000358273.4:c.1942G>T	p.Glu648Ter	p.E648*	ENST00000358273	NM_001042492.2	648	Gaa/Taa						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29685536	29685536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1131691074		P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			831	295	407	0	ENST00000358273.4:c.8009C>A	p.Ser2670Ter	p.S2670*	ENST00000358273	NM_001042492.2	2670	tCa/tAa						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41244352	41244352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1768	102	611	0	ENST00000357654.3:c.3196G>A	p.Glu1066Lys	p.E1066K	ENST00000357654	NM_007294.3	1066	Gaa/Aaa						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2216292	2216292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			529	207	293	0	ENST00000398665.3:c.1936G>A	p.Glu646Lys	p.E646K	ENST00000398665	NM_032482.2	646	Gag/Aag						NEWRECORD																																																																									
AXL	558	MSKCC	GRCh37	19	41759575	41759575	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1210	345	538	1	ENST00000301178.4:c.1998G>C	p.Lys666Asn	p.K666N	ENST00000301178	NM_021913.4	666	aaG/aaC						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44929487	44929487	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1469	422	627	0	ENST00000377967.4:c.2587C>G	p.Gln863Glu	p.Q863E	ENST00000377967	NM_021140.2	863	Cag/Gag						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151873674	151873674	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			906	234	309	0	ENST00000262189.6:c.8864del	p.Pro2955LeufsTer4	p.P2955Lfs*4	ENST00000262189	NM_170606.2	2955	cCt/ct						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115120666	115120667	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CC	CC	-			P-0000138-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1395	382	583	0	ENST00000257566.3:c.339_340del	p.Trp113Ter	p.W113*	ENST00000257566	NM_016569.3	113	tgGGat/tgat						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115120893	115120893	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	37	447	0	ENST00000257566.3:c.113del	p.Pro38ArgfsTer7	p.P38Rfs*7	ENST00000257566	NM_016569.3	38	cCg/cg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	30	377	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610136	10610136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	61	417	0	ENST00000171111.5:c.574G>A	p.Glu192Lys	p.E192K	ENST00000171111	NM_203500.1	192	Gag/Aag						NEWRECORD																																																																									
MYD88	4615	MSKCC	GRCh37	3	38182641	38182641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	34	372	0	ENST00000396334.3:c.794T>C	p.Leu265Pro	p.L265P	ENST00000396334	NM_002468.4	265	cTg/cCg						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64577404	64577404	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1454	148	574	1	ENST00000337652.1:c.178G>T	p.Glu60Ter	p.E60*	ENST00000337652	NM_130803.2	60	Gag/Tag						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73352346	73352346	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1492	83	638	0	ENST00000377767.4:c.559G>C	p.Glu187Gln	p.E187Q	ENST00000377767	NM_014953.3	187	Gaa/Caa						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11168944	11168944	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	47	359	0	ENST00000344626.4:c.4438C>T	p.Gln1480Ter	p.Q1480*	ENST00000344626	NM_003072.3	1480	Cag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	23	274	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	21	319	0	ENST00000269305.4:c.400T>C	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	Ttt/Ctt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0007007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	127	388	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117681010	117681010	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	85	316	0	ENST00000368508.3:c.3610C>G	p.Leu1204Val	p.L1204V	ENST00000368508	NM_002944.2	1204	Ctc/Gtc						NEWRECORD																																																																									
MITF	4286	MSKCC	GRCh37	3	70014094	70014094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1445	188	682	2	ENST00000352241.4:c.1258C>A	p.Pro420Thr	p.P420T	ENST00000352241	NM_198159.2	420	Ccc/Acc						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106190831	106190831	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	113	398	1	ENST00000380013.4:c.4109G>T	p.Gly1370Val	p.G1370V	ENST00000380013	NM_001127208.2	1370	gGg/gTg						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52439873	52439873	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	109	337	0	ENST00000460680.1:c.839del	p.Gln280ArgfsTer55	p.Q280Rfs*55	ENST00000460680	NM_004656.3	280	cAg/cg						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	161	397	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747342068		P-0006434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	173	462	0	ENST00000269305.4:c.394A>G	p.Lys132Glu	p.K132E	ENST00000269305	NM_001126112.2	132	Aag/Gag						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243828162	243828162	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	46	384	1	ENST00000263826.5:c.196C>T	p.Arg66Ter	p.R66*	ENST00000263826	NM_005465.4	66	Cga/Tga						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153258970	153258970	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	156	398	0	ENST00000281708.4:c.845C>A	p.Ser282Ter	p.S282*	ENST00000281708	NM_033632.3	282	tCa/tAa						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56183252	56183252	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	77	429	0	ENST00000399503.3:c.4162G>C	p.Asp1388His	p.D1388H	ENST00000399503	NM_005921.1	1388	Gat/Cat						NEWRECORD																																																																									
HIST1H3C	8352	MSKCC	GRCh37	6	26045765	26045765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	150	841	1	ENST00000540144.1:c.127C>T	p.Arg43Cys	p.R43C	ENST00000540144	NM_003531.2	43	Cgc/Tgc						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114711344	114711344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	113	257	0	ENST00000543371.1:c.359C>T	p.Ser120Leu	p.S120L	ENST00000543371	NM_001198531.1	120	tCg/tTg						NEWRECORD																																																																									
TRAF7	84231	MSKCC	GRCh37	16	2223313	2223313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	73	499	0	ENST00000326181.6:c.925G>A	p.Asp309Asn	p.D309N	ENST00000326181	NM_032271.2	309	Gac/Aac						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66942821	66942821	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	182	529	0	ENST00000374690.3:c.2602C>A	p.Gln868Lys	p.Q868K	ENST00000374690	NM_000044.3	868	Cag/Aag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175433	112175434	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0006434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	158	329	0	ENST00000257430.4:c.4143_4144del	p.Leu1382HisfsTer3	p.L1382Hfs*3	ENST00000257430	NM_000038.5	1381	cCA/c						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0005544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	111	384	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3777874	3777874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	64	744	1	ENST00000262367.5:c.7174G>A	p.Ala2392Thr	p.A2392T	ENST00000262367	NM_004380.2	2392	Gcc/Acc						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55956172	55956172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	70	493	1	ENST00000263923.4:c.3143G>T	p.Gly1048Val	p.G1048V	ENST00000263923	NM_002253.2	1048	gGc/gTc						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116397818	116397819	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0005544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1297	69	501	0	ENST00000397752.3:c.2092_2093delinsTT	p.Thr698Phe	p.T698F	ENST00000397752	NM_000245.2	698	ACt/TTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578466	7578466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006047-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			853	119	433	0	ENST00000269305.4:c.464C>T	p.Thr155Ile	p.T155I	ENST00000269305	NM_001126112.2	155	aCc/aTc						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39607452	39607452	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006047-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			898	124	538	1	ENST00000262039.4:c.1530T>A	p.Asp510Glu	p.D510E	ENST00000262039	NM_002647.2	510	gaT/gaA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs530941076		P-0006675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	420	389	0	ENST00000269305.4:c.658T>C	p.Tyr220His	p.Y220H	ENST00000269305	NM_001126112.2	220	Tat/Cat						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89521670	89521670	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	260	414	0	ENST00000336596.2:c.2747C>G	p.Thr916Arg	p.T916R	ENST00000336596	NM_005233.5	916	aCa/aGa						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66467446	66467446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	310	346	0	ENST00000273854.3:c.823C>T	p.His275Tyr	p.H275Y	ENST00000273854	NM_004439.5	275	Cac/Tac						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3778153	3778153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	317	350	0	ENST00000262367.5:c.6895C>A	p.Gln2299Lys	p.Q2299K	ENST00000262367	NM_004380.2	2299	Cag/Aag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0007671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	299	482	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	115	406	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat						NEWRECORD																																																																									
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913476		P-0007671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	184	868	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA						NEWRECORD																																																																									
PLK2	10769	MSKCC	GRCh37	5	57754325	57754325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1197	70	552	1	ENST00000274289.3:c.526G>T	p.Val176Leu	p.V176L	ENST00000274289	NM_006622.3	176	Gtg/Ttg						NEWRECORD																																																																									
GPS2	2874	MSKCC	GRCh37	17	7217306	7217306	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0007671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	388	673	0	ENST00000380728.2:c.399del	p.Ser134AlafsTer211	p.S134Afs*211	ENST00000380728		133	ggG/gg						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12028668	12028668	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	312	641	0	ENST00000353533.5:c.871del	p.Trp291GlyfsTer27	p.W291Gfs*27	ENST00000353533	NM_003010.3	291	Tgg/gg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007776-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1174	99	392	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
CDC73	79577	MSKCC	GRCh37	1	193111110	193111110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007776-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1287	153	366	0	ENST00000367435.3:c.643G>T	p.Asp215Tyr	p.D215Y	ENST00000367435	NM_024529.4	215	Gat/Tat						NEWRECORD																																																																									
CDC73	79577	MSKCC	GRCh37	1	193121549	193121549	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007776-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1275	143	479	0	ENST00000367435.3:c.947A>G	p.His316Arg	p.H316R	ENST00000367435	NM_024529.4	316	cAt/cGt						NEWRECORD																																																																									
HIST1H3J	8356	MSKCC	GRCh37	6	27858549	27858549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007776-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1329	108	650	0	ENST00000359303.2:c.22G>A	p.Ala8Thr	p.A8T	ENST00000359303	NM_003535.2	8	Gct/Act						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610096	10610096	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007776-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	62	423	0	ENST00000171111.5:c.614A>T	p.Glu205Val	p.E205V	ENST00000171111	NM_203500.1	205	gAg/gTg						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17948788	17948788	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007776-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1120	70	555	0	ENST00000458235.1:c.1654G>T	p.Glu552Ter	p.E552*	ENST00000458235	NM_000215.3	552	Gag/Tag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0006886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	846	538	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259442	55259442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	768	393	0	ENST00000275493.2:c.2500G>T	p.Val834Leu	p.V834L	ENST00000275493	NM_005228.3	834	Gtg/Ttg						NEWRECORD																																																																									
SOCS1	8651	MSKCC	GRCh37	16	11349224	11349224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	44	57	0	ENST00000332029.2:c.112C>T	p.Arg38Cys	p.R38C	ENST00000332029	NM_003745.1	38	Cgc/Tgc						NEWRECORD																																																																									
MALT1	10892	MSKCC	GRCh37	18	56348510	56348510	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	459	670	2	ENST00000348428.3:c.318G>C	p.Leu106Phe	p.L106F	ENST00000348428	NM_006785.3	106	ttG/ttC						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47162125	47162125	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	332	294	0	ENST00000409792.3:c.4001del	p.Asp1334ValfsTer39	p.D1334Vfs*39	ENST00000409792	NM_014159.6	1334	gAt/gt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27057948	27057957	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGCCACAG	ACAGCCACAG	-			P-0006886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	217	429	0	ENST00000324856.7:c.1656_1665del	p.Gln553LeufsTer63	p.Q553Lfs*63	ENST00000324856	NM_006015.4	552	tcACAGCCACAG/tc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578528	7578528	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	226	342	0	ENST00000269305.4:c.402T>G	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	ttT/ttG						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0008934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	438	261	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1294088	1294088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	245	380	0	ENST00000310581.5:c.913G>A	p.Ala305Thr	p.A305T	ENST00000310581	NM_198253.2	305	Gcg/Acg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	121	340	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912580		P-0004796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	106	355	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	107	447	0	ENST00000269305.4:c.706T>G	p.Tyr236Asp	p.Y236D	ENST00000269305	NM_001126112.2	236	Tac/Gac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0008215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	310	353	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32906916	32906919	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-	rs80359279		P-0008215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	57	213	0	ENST00000380152.3:c.1310_1313delAAGA	p.Lys437IlefsTer22	p.K437Ifs*22	ENST00000380152		434	aAAAGa/aa						NEWRECORD																																																																									
E2F3	1871	MSKCC	GRCh37	6	20483132	20483132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1691	131	359	1	ENST00000346618.3:c.865G>A	p.Glu289Lys	p.E289K	ENST00000346618	NM_001949.4	289	Gag/Aag						NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	162206921	162206921	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	70	228	0	ENST00000366898.1:c.754C>T	p.Gln252Ter	p.Q252*	ENST00000366898	NM_004562.2	252	Cag/Tag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55223597	55223597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	32	284	1	ENST00000275493.2:c.964G>A	p.Gly322Ser	p.G322S	ENST00000275493	NM_005228.3	322	Ggc/Agc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151882690	151882690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	60	159	0	ENST00000262189.6:c.5035G>T	p.Ala1679Ser	p.A1679S	ENST00000262189	NM_170606.2	1679	Gcc/Tcc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	48	255	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	126	474	1	ENST00000269305.4:c.880delG	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	294	Gag/ag						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692886	89692886	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	42	232	0	ENST00000371953.3:c.370T>A	p.Cys124Ser	p.C124S	ENST00000371953	NM_000314.4	124	Tgt/Agt						NEWRECORD																																																																									
VHL	7428	MSKCC	GRCh37	3	10191489	10191489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	100	418	2	ENST00000256474.2:c.482G>T	p.Arg161Leu	p.R161L	ENST00000256474	NM_000551.3	161	cGa/cTa						NEWRECORD																																																																									
CBFB	865	MSKCC	GRCh37	16	67063320	67063320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	76	240	1	ENST00000412916.2:c.10G>T	p.Val4Phe	p.V4F	ENST00000412916		4	Gtc/Ttc						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53227948	53227948	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0007547-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	455	367	2	ENST00000375401.3:c.2366G>A	p.Arg789His	p.R789H	ENST00000375401	NM_004187.3	789	cGc/cAc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	40	338	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	206	315	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89815102	89815102	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	120	588	0	ENST00000389301.3:c.3313T>A	p.Cys1105Ser	p.C1105S	ENST00000389301	NM_000135.2	1105	Tgc/Agc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0006205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	203	399	0	ENST00000269305.4:c.377A>C	p.Tyr126Ser	p.Y126S	ENST00000269305	NM_001126112.2	126	tAc/tCc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	99	422	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
ERG	2078	MSKCC	GRCh37	21	39755362	39755362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	94	528	0	ENST00000288319.7:c.1403C>T	p.Thr468Ile	p.T468I	ENST00000288319	NM_182918.3	468	aCc/aTc						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67589535	67589535	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0005806-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	309	289	0	ENST00000274335.5:c.1300-2A>T		p.X434_splice	ENST00000274335		434							NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174751	112174753	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0005806-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	31	477	2	ENST00000257430.4:c.3468_3470delAGA	p.Glu1157del	p.E1157del	ENST00000257430	NM_000038.5	1154	GAA/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578488	7578488	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	395	478	0	ENST00000269305.4:c.442del	p.Asp148IlefsTer22	p.D148Ifs*22	ENST00000269305	NM_001126112.2	148	Gat/at						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249020	55249020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	120	369	0	ENST00000275493.2:c.2318A>G	p.His773Arg	p.H773R	ENST00000275493	NM_005228.3	773	cAc/cGc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151878033	151878033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	62	333	0	ENST00000262189.6:c.6912G>A	p.Met2304Ile	p.M2304I	ENST00000262189	NM_170606.2	2304	atG/atA						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	112	213	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
PLK2	10769	MSKCC	GRCh37	5	57755527	57755527	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	64	121	0	ENST00000274289.3:c.260T>A	p.Val87Glu	p.V87E	ENST00000274289	NM_006622.3	87	gTg/gAg						NEWRECORD																																																																									
RPS6KB2	6199	MSKCC	GRCh37	11	67198852	67198852	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	75	192	0	ENST00000312629.5:c.323G>C	p.Arg108Pro	p.R108P	ENST00000312629	NM_003952.2	108	cGc/cCc						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95590599	95590599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	59	317	0	ENST00000343455.3:c.1310C>T	p.Pro437Leu	p.P437L	ENST00000343455	NM_177438.2	437	cCt/cTt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1226618	1226618	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	46	154	0	ENST00000326873.7:c.1274G>C	p.Arg425Pro	p.R425P	ENST00000326873	NM_000455.4	425	cGc/cCc						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47028898	47028898	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0007816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	71	139	0	ENST00000329236.7:c.201+1G>T		p.X67_splice	ENST00000329236	NM_001204466.1	67							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	31	364	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48941648	48941648	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913300		P-0004906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	74	344	0	ENST00000267163.4:c.958C>T	p.Arg320Ter	p.R320*	ENST00000267163	NM_000321.2	320	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0004906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	23	572	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30732918	30732918	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	34	389	0	ENST00000359013.4:c.1606C>T	p.Gln536Ter	p.Q536*	ENST00000359013	NM_001024847.2	536	Cag/Tag						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974714	21974714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	20	261	0	ENST00000304494.5:c.113C>A	p.Pro38His	p.P38H	ENST00000304494	NM_000077.4	38	cCc/cAc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0009059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	26	724	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1131691025		P-0006703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	438	523	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt						NEWRECORD																																																																									
FLCN	201163	MSKCC	GRCh37	17	17120481	17120481	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	379	451	0	ENST00000285071.4:c.1078T>A	p.Ser360Thr	p.S360T	ENST00000285071	NM_144997.5	360	Tct/Act						NEWRECORD																																																																									
RFWD2	64326	MSKCC	GRCh37	1	176085809	176085827	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATAATACTACTGCAAAATG	ATAATACTACTGCAAAATG	-			P-0006703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1068	530	558	0	ENST00000367669.3:c.969-10_977del		p.X323_splice	ENST00000367669	NM_022457.5	323							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	172	628	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0005708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	103	885	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198270192	198270192	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	67	576	0	ENST00000335508.6:c.1244T>C	p.Leu415Pro	p.L415P	ENST00000335508	NM_012433.2	415	cTt/cCt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106904	27106904	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	35	735	1	ENST00000324856.7:c.6516del	p.Asn2173ThrfsTer27	p.N2173Tfs*27	ENST00000324856	NM_006015.4	2172	gCc/gc						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32190321	32190321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	21	233	0	ENST00000375023.3:c.418C>T	p.Arg140Cys	p.R140C	ENST00000375023	NM_004557.3	140	Cgc/Tgc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242478	55242478	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913229		P-0009042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	94	338	0	ENST00000275493.2:c.2248G>C	p.Ala750Pro	p.A750P	ENST00000275493	NM_005228.3	750	Gca/Cca						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41729508	41729508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1109	173	732	2	ENST00000242208.4:c.1021G>A	p.Ala341Thr	p.A341T	ENST00000242208	NM_002192.2	341	Gct/Act						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145739837	145739837	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	45	459	0	ENST00000428558.2:c.1693G>C	p.Val565Leu	p.V565L	ENST00000428558	NM_004260.3	565	Gtc/Ctc						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72830793	72830793	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	103	726	0	ENST00000268489.5:c.5788T>C	p.Ser1930Pro	p.S1930P	ENST00000268489	NM_006885.3	1930	Tcc/Ccc						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17953916	17953916	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	47	375	0	ENST00000458235.1:c.486T>A	p.Cys162Ter	p.C162*	ENST00000458235	NM_000215.3	162	tgT/tgA						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242478	+	protein_altering_variant	In_Frame_Del	DEL	GAATTAAGAGAAG	GAATTAAGAGAAG	ATTC			P-0009042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	92	350	0	ENST00000275493.2:c.2236_2248delinsATTC	p.Glu746_Ala750delinsIlePro	p.E746_A750delinsIP	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGca/ATTCca						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0009663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	37	364	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31023544	31023544	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116112525		P-0009663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	48	399	1	ENST00000375687.4:c.3029C>T	p.Thr1010Met	p.T1010M	ENST00000375687	NM_015338.5	1010	aCg/aTg						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2962846	2962846	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	64	441	2	ENST00000396946.4:c.2062C>T	p.Arg688Ter	p.R688*	ENST00000396946	NM_032415.4	688	Cga/Tga						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8340450	8340450	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200354236		P-0009663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	34	491	0	ENST00000356435.5:c.5146G>A	p.Ala1716Thr	p.A1716T	ENST00000356435		1716	Gct/Act						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0008668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	220	410	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0008668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	135	286	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95574277	95574277	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	71	402	0	ENST00000343455.3:c.2590G>T	p.Ala864Ser	p.A864S	ENST00000343455	NM_177438.2	864	Gca/Tca						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0007580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	121	442	1	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55241711	55241711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	109	394	0	ENST00000275493.2:c.2159C>T	p.Ser720Phe	p.S720F	ENST00000275493	NM_005228.3	720	tCc/tTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	88	464	0	ENST00000269305.4:c.578A>C	p.His193Pro	p.H193P	ENST00000269305	NM_001126112.2	193	cAt/cCt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0009655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2040	77	701	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0009655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	1136	688	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0009655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	55	520	1	ENST00000269305.4:c.374C>A	p.Thr125Lys	p.T125K	ENST00000269305	NM_001126112.2	125	aCg/aAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0009700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	220	506	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	394	454	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16042434	16042434	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	187	565	0	ENST00000268712.3:c.1240C>T	p.Arg414Ter	p.R414*	ENST00000268712	NM_006311.3	414	Cga/Tga						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151949065	151949065	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0009700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	170	512	0	ENST00000262189.6:c.1580T>G	p.Leu527Ter	p.L527*	ENST00000262189	NM_170606.2	527	tTa/tGa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151960134	151960134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1251	154	612	0	ENST00000262189.6:c.1266G>A	p.Met422Ile	p.M422I	ENST00000262189	NM_170606.2	422	atG/atA						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63851653	63851653	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	108	445	0	ENST00000279873.7:c.2431G>C	p.Asp811His	p.D811H	ENST00000279873	NM_032199.2	811	Gat/Cat						NEWRECORD																																																																									
MAP2K1	5604	MSKCC	GRCh37	15	66782901	66782901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	74	413	0	ENST00000307102.5:c.1130C>T	p.Ser377Phe	p.S377F	ENST00000307102	NM_002755.3	377	tCc/tTc						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23641767	23641767	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1145	102	482	0	ENST00000261584.4:c.1708G>C	p.Glu570Gln	p.E570Q	ENST00000261584	NM_024675.3	570	Gag/Cag						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89346798	89346798	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0009700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	85	620	0	ENST00000301030.4:c.6152C>G	p.Ser2051Ter	p.S2051*	ENST00000301030	NM_001256183.1	2051	tCa/tGa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0009826-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	49	497	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175223	112175223	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009826-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	41	247	0	ENST00000257430.4:c.3933del	p.Ile1311MetfsTer10	p.I1311Mfs*10	ENST00000257430	NM_000038.5	1311	aTt/at						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8340407	8340407	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201651279		P-0007228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	125	504	2	ENST00000356435.5:c.5189G>A	p.Arg1730Gln	p.R1730Q	ENST00000356435		1730	cGg/cAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577122	7577123	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0007228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	153	556	0	ENST00000269305.4:c.815_816del	p.Val272AlafsTer33	p.V272Afs*33	ENST00000269305	NM_001126112.2	272	gTG/g						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0006140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	56	373	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2984019	2984019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	116	498	0	ENST00000396946.4:c.511G>T	p.Val171Leu	p.V171L	ENST00000396946	NM_032415.4	171	Gtg/Ttg						NEWRECORD																																																																									
JUN	3725	MSKCC	GRCh37	1	59248598	59248598	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1044	110	514	0	ENST00000371222.2:c.145C>A	p.Leu49Met	p.L49M	ENST00000371222	NM_002228.3	49	Ctg/Atg						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226567767	226567767	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	159	518	0	ENST00000366794.5:c.1399A>C	p.Lys467Gln	p.K467Q	ENST00000366794	NM_001618.3	467	Aag/Cag						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143226639	143226639	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0006140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	64	394	1	ENST00000262992.4:c.475A>T	p.Lys159Ter	p.K159*	ENST00000262992	NM_001101669.1	159	Aag/Tag						NEWRECORD																																																																									
MAX	4149	MSKCC	GRCh37	14	65544661	65544661	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0006140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	115	513	0	ENST00000358664.4:c.265A>T	p.Lys89Ter	p.K89*	ENST00000358664	NM_002382.4	89	Aag/Tag						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15989709	15989709	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	94	405	0	ENST00000268712.3:c.3064G>T	p.Val1022Phe	p.V1022F	ENST00000268712	NM_006311.3	1022	Gtt/Ttt						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70342661	70342661	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1116	71	593	0	ENST00000374080.3:c.1422C>A	p.Ser474Arg	p.S474R	ENST00000374080		474	agC/agA						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	275	471	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151874292	151874292	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0005268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	98	406	0	ENST00000262189.6:c.8246T>G	p.Leu2749Ter	p.L2749*	ENST00000262189	NM_170606.2	2749	tTa/tGa						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	111	513	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	86	604	0	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	98	509	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	51	335	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	75	480	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g						NEWRECORD																																																																									
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	145	484	5	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	97	519	2	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at						NEWRECORD																																																																									
TSHR	7253	MSKCC	GRCh37	14	81610083	81610083	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	30	513	0	ENST00000298171.2:c.1681A>C	p.Ser561Arg	p.S561R	ENST00000298171	NM_000369.2	561	Agt/Cgt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604775	48604775	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	116	517	0	ENST00000342988.3:c.1597C>A	p.Leu533Ile	p.L533I	ENST00000342988	NM_005359.5	533	Ctc/Atc						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	122	789	6	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157522454	157522454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	106	509	0	ENST00000346085.5:c.4726C>T	p.Pro1576Ser	p.P1576S	ENST00000346085	NM_020732.3	1576	Ccg/Tcg						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27101655	27101655	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	75	520	0	ENST00000324856.7:c.4937T>G	p.Val1646Gly	p.V1646G	ENST00000324856	NM_006015.4	1646	gTt/gGt						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	113	395	0	ENST00000359013.4:c.1657C>A	p.Arg553Ser	p.R553S	ENST00000359013	NM_001024847.2	553	Cgt/Agt						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47165917	47165917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	158	704	0	ENST00000409792.3:c.209G>A	p.Arg70Gln	p.R70Q	ENST00000409792	NM_014159.6	70	cGa/cAa						NEWRECORD																																																																									
MST1R	4486	MSKCC	GRCh37	3	49939821	49939821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	211	816	1	ENST00000296474.3:c.1222C>T	p.Pro408Ser	p.P408S	ENST00000296474	NM_002447.2	408	Ccc/Tcc						NEWRECORD																																																																									
FOXL2	668	MSKCC	GRCh37	3	138664795	138664795	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113777439		P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			52	35	110	0	ENST00000330315.3:c.770C>T	p.Pro257Leu	p.P257L	ENST00000330315	NM_023067.3	257	cCg/cTg						NEWRECORD																																																																									
PHOX2B	8929	MSKCC	GRCh37	4	41747937	41747937	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138545772		P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	71	373	0	ENST00000226382.2:c.832G>A	p.Gly278Ser	p.G278S	ENST00000226382	NM_003924.3	278	Ggc/Agc						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187534340	187534340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	147	557	0	ENST00000441802.2:c.9386C>T	p.Pro3129Leu	p.P3129L	ENST00000441802	NM_005245.3	3129	cCt/cTt						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	39074216	39074216	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	77	340	0	ENST00000357387.3:c.94C>T	p.Arg32Ter	p.R32*	ENST00000357387	NM_152756.3	32	Cga/Tga						NEWRECORD																																																																									
E2F3	1871	MSKCC	GRCh37	6	20402690	20402690	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	98	436	0	ENST00000346618.3:c.227G>T	p.Ser76Ile	p.S76I	ENST00000346618	NM_001949.4	76	aGc/aTc						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32168928	32168928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	126	744	0	ENST00000375023.3:c.4105C>T	p.Pro1369Ser	p.P1369S	ENST00000375023	NM_004557.3	1369	Ccc/Tcc						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133759406	133759406	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	196	883	3	ENST00000318560.5:c.1729C>T	p.Arg577Ter	p.R577*	ENST00000318560	NM_005157.4	577	Cga/Tga						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110434595	110434595	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	73	357	0	ENST00000375856.3:c.3806A>C	p.Gln1269Pro	p.Q1269P	ENST00000375856	NM_003749.2	1269	cAg/cCg						NEWRECORD																																																																									
PDPK1	5170	MSKCC	GRCh37	16	2647720	2647720	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	135	683	2	ENST00000342085.4:c.1623G>T	p.Glu541Asp	p.E541D	ENST00000342085	NM_002613.4	541	gaG/gaT						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37884277	37884277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	88	462	0	ENST00000269571.5:c.3748G>A	p.Gly1250Ser	p.G1250S	ENST00000269571		1250	Ggt/Agt						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56438279	56438279	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	83	457	0	ENST00000407977.2:c.714G>A	p.Trp238Ter	p.W238*	ENST00000407977		238	tgG/tgA						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63554617	63554617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	66	375	2	ENST00000307078.5:c.122G>A	p.Gly41Asp	p.G41D	ENST00000307078	NM_004655.3	41	gGc/gAc						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70117726	70117726	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	123	787	0	ENST00000245479.2:c.194A>C	p.Glu65Ala	p.E65A	ENST00000245479	NM_000346.3	65	gAg/gCg						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10265302	10265302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	86	486	2	ENST00000340748.4:c.1744C>T	p.Arg582Trp	p.R582W	ENST00000340748		582	Cgg/Tgg						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17953390	17953390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	70	447	0	ENST00000458235.1:c.596G>A	p.Arg199His	p.R199H	ENST00000458235	NM_000215.3	199	cGc/cAc						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42798822	42798822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	109	585	4	ENST00000575354.2:c.4394G>A	p.Arg1465His	p.R1465H	ENST00000575354	NM_015125.3	1465	cGc/cAc						NEWRECORD																																																																									
BCL2L1	598	MSKCC	GRCh37	20	30309542	30309542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	159	707	0	ENST00000307677.4:c.480G>T	p.Gln160His	p.Q160H	ENST00000307677	NM_138578.1	160	caG/caT						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53222717	53222717	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	90	321	0	ENST00000375401.3:c.4219del	p.Asp1407ThrfsTer5	p.D1407Tfs*5	ENST00000375401	NM_004187.3	1407	Gac/ac						NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	161969885	161969885	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	52	434	0	ENST00000366898.1:c.1083+1del		p.X361_splice	ENST00000366898	NM_004562.2	361							NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575133	48575133	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	163	643	1	ENST00000342988.3:c.330del	p.Lys110AsnfsTer12	p.K110Nfs*12	ENST00000342988	NM_005359.5	109	ctA/ct						NEWRECORD																																																																									
E2F3	1871	MSKCC	GRCh37	6	20480133	20480133	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	124	664	0	ENST00000346618.3:c.454del	p.Thr152ProfsTer43	p.T152Pfs*43	ENST00000346618	NM_001949.4	150	ttA/tt						NEWRECORD																																																																									
NCOA3	8202	MSKCC	GRCh37	20	46265049	46265049	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	81	1066	0	ENST00000371998.3:c.1924del	p.Leu642Ter	p.L642*	ENST00000371998		640	tCc/tc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0005439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	335	722	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0005439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	181	479	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0005439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	107	457	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	95	386	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2959241	2959241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	159	391	1	ENST00000396946.4:c.2275C>T	p.Arg759Trp	p.R759W	ENST00000396946	NM_032415.4	759	Cgg/Tgg						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	10274192	10274192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	44	314	0	ENST00000330684.3:c.77C>T	p.Ala26Val	p.A26V	ENST00000330684	NM_001134407.1	26	gCg/gTg						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70117702	70117711	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCCGATCT	AGCCCGATCT	-			P-0005439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	480	724	0	ENST00000245479.2:c.170_179del	p.Glu57GlyfsTer50	p.E57Gfs*50	ENST00000245479	NM_000346.3	57	gAGCCCGATCTg/gg						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98209714	98209714	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	259	439	0	ENST00000331920.6:c.3824G>C	p.Arg1275Thr	p.R1275T	ENST00000331920	NM_000264.3	1275	aGg/aCg						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	396401	396401	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	78	569	0	ENST00000262320.3:c.625G>C	p.Glu209Gln	p.E209Q	ENST00000262320	NM_003502.3	209	Gaa/Caa						NEWRECORD																																																																									
STAT5B	6777	MSKCC	GRCh37	17	40375538	40375538	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1482	219	979	0	ENST00000293328.3:c.412T>C	p.Ser138Pro	p.S138P	ENST00000293328	NM_012448.3	138	Tcc/Ccc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151855575	151856039	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTCGTGTCCTTGAATTGTTTGTTTTTTTTTTGTTTTTTTTTTTGAGACACAGTCTCATTCTGTCACCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCTGCCATCCAGGCTCAAGCAATTCTCGTGCCTCAGCCTCCCAAGTAGCTGGAATTACAGGCGTGTACCACCACGCCCAGTAAATGTTTGTATTTTTCGTAGAGATGAGGTTTTGCCATGTTGGCTAAGCTCATCTAGAACTCATGCCTCAAGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCCCCCAGCCTATATCCTTGACTTTTAAAAGAGGCTGCTCTAAATGACTCACCCTCACCTGTTTCAAGTGGGTAAACGTGTCAGTGCTAGAGTACATAGCTTGTTTCTCCTCTTCGTCCTTTTTCCTTTTCTTTGAGCGAGGTGCTGCTT	TCTCGTGTCCTTGAATTGTTTGTTTTTTTTTTGTTTTTTTTTTTGAGACACAGTCTCATTCTGTCACCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCTGCCATCCAGGCTCAAGCAATTCTCGTGCCTCAGCCTCCCAAGTAGCTGGAATTACAGGCGTGTACCACCACGCCCAGTAAATGTTTGTATTTTTCGTAGAGATGAGGTTTTGCCATGTTGGCTAAGCTCATCTAGAACTCATGCCTCAAGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCCCCCAGCCTATATCCTTGACTTTTAAAAGAGGCTGCTCTAAATGACTCACCCTCACCTGTTTCAAGTGGGTAAACGTGTCAGTGCTAGAGTACATAGCTTGTTTCTCCTCTTCGTCCTTTTTCCTTTTCTTTGAGCGAGGTGCTGCTT	-			P-0007040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			0	61	0	0	ENST00000262189.6:c.11579_11670+373del		p.X3860_splice	ENST00000262189	NM_170606.2	3860							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579371	7579390	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCCTGGTAGGTTTTCTGG	TGCCCTGGTAGGTTTTCTGG	-			P-0007040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	198	575	0	ENST00000269305.4:c.297_316del	p.Gln100LeufsTer42	p.Q100Lfs*42	ENST00000269305	NM_001126112.2	99	tcCCAGAAAACCTACCAGGGCAgc/tcgc						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32907159	32907159	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	160	513	0	ENST00000380152.3:c.1544del	p.Thr515IlefsTer10	p.T515Ifs*10	ENST00000380152		515	aCt/at						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32188217	32188217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009409-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	27	313	0	ENST00000375023.3:c.1124G>A	p.Gly375Asp	p.G375D	ENST00000375023	NM_004557.3	375	gGc/gAc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	40	281	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0006593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	75	433	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3820925	3820925	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	42	268	0	ENST00000262367.5:c.2526G>T	p.Gln842His	p.Q842H	ENST00000262367	NM_004380.2	842	caG/caT						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006622-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	86	273	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55231427	55231427	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006622-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	52	457	0	ENST00000275493.2:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000275493	NM_005228.3	545	Gag/Aag						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115900	8115922	+	frameshift_variant	Frame_Shift_Del	DEL	CTGACCACGCCCACGCCGATGCA	CTGACCACGCCCACGCCGATGCA	-			P-0006622-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	124	383	0	ENST00000346208.3:c.1247_1269del	p.Leu416ProfsTer83	p.L416Pfs*83	ENST00000346208		416	CTGACCACGCCCACGCCGATGCAc/c						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39932646	39932646	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006451-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1160	393	715	0	ENST00000378444.4:c.1953del	p.Tyr653ThrfsTer16	p.Y653Tfs*16	ENST00000378444	NM_001123385.1	651	atT/at						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0007874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	20	188	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753660142		P-0007874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	83	403	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061213	38061213	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	70	303	0	ENST00000250448.2:c.776A>C	p.Tyr259Ser	p.Y259S	ENST00000250448	NM_004496.3	259	tAc/tCc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0009515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	298	330	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0009515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	331	329	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48955550	48955550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	376	327	1	ENST00000267163.4:c.1666C>T	p.Arg556Ter	p.R556*	ENST00000267163	NM_000321.2	556	Cga/Tga						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70341212	70341212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	326	512	0	ENST00000374080.3:c.771G>T	p.Trp257Cys	p.W257C	ENST00000374080		257	tgG/tgT						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0008321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	271	604	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41100948	41100948	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	195	379	0	ENST00000373198.4:c.1408C>T	p.Arg470Ter	p.R470*	ENST00000373198	NM_133170.3	470	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0008321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	244	429	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180056292	180056292	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	367	608	0	ENST00000261937.6:c.952C>T	p.Arg318Ter	p.R318*	ENST00000261937	NM_182925.4	318	Cga/Tga						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89357165	89357165	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	204	532	0	ENST00000301030.4:c.469A>G	p.Thr157Ala	p.T157A	ENST00000301030	NM_001256183.1	157	Acc/Gcc						NEWRECORD																																																																									
CD79A	973	MSKCC	GRCh37	19	42383707	42383707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	478	567	0	ENST00000221972.3:c.482C>T	p.Thr161Met	p.T161M	ENST00000221972	NM_021601.3	161	aCg/aTg						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2983883	2983885	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0008321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1202	138	641	0	ENST00000396946.4:c.645_647delGAA	p.Lys215del	p.K215del	ENST00000396946	NM_032415.4	215	aaGAAc/aac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	124	362	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			29	118	210	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa						NEWRECORD																																																																									
IRS1	3667	MSKCC	GRCh37	2	227661411	227661411	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	104	271	0	ENST00000305123.5:c.2044A>T	p.Ser682Cys	p.S682C	ENST00000305123	NM_005544.2	682	Agc/Tgc						NEWRECORD																																																																									
HLA-A	3105	MSKCC	GRCh37	6	29910587	29910587	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	33	140	0	ENST00000376809.5:c.127G>T	p.Glu43Ter	p.E43*	ENST00000376809	NM_002116.7	43	Gag/Tag						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42798773	42798773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	90	250	0	ENST00000575354.2:c.4345G>A	p.Val1449Met	p.V1449M	ENST00000575354	NM_015125.3	1449	Gtg/Atg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936096	+	missense_variant	Missense_Mutation	DNP	AG	AG	CC			P-0007645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	105	244	0	ENST00000263967.3:c.1637_1638delinsCC	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAG/cCC						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0009949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	17	405	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	124	392	1	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175271	112175271	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	19	226	0	ENST00000257430.4:c.3980C>A	p.Ser1327Ter	p.S1327*	ENST00000257430	NM_000038.5	1327	tCa/tAa						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114711367	114711367	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0009949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	94	182	0	ENST00000543371.1:c.381+1G>A		p.X127_splice	ENST00000543371	NM_001198531.1	127							NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64572556	64572556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	85	247	0	ENST00000337652.1:c.1315G>A	p.Val439Met	p.V439M	ENST00000337652	NM_130803.2	439	Gtg/Atg						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5244166	5244166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	22	352	0	ENST00000357368.4:c.1316G>A	p.Ser439Asn	p.S439N	ENST00000357368	NM_002850.3	439	aGc/aAc						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17945509	17945509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	35	272	1	ENST00000458235.1:c.2221C>T	p.Arg741Trp	p.R741W	ENST00000458235	NM_000215.3	741	Cgg/Tgg						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38945649	38945649	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	119	445	0	ENST00000357387.3:c.4577T>C	p.Ile1526Thr	p.I1526T	ENST00000357387	NM_152756.3	1526	aTt/aCt						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64572060	64572060	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	668	620	0	ENST00000337652.1:c.1594C>T	p.Arg532Ter	p.R532*	ENST00000337652	NM_130803.2	532	Cga/Tga						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37650813	37650813	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	320	587	0	ENST00000447079.4:c.2285A>G	p.Asn762Ser	p.N762S	ENST00000447079	NM_015083.1	762	aAt/aGt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023821	27023821	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	54	326	0	ENST00000324856.7:c.927G>C	p.Gln309His	p.Q309H	ENST00000324856	NM_006015.4	309	caG/caC						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64572006	64572006	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	65	659	1	ENST00000337652.1:c.1648C>A	p.Pro550Thr	p.P550T	ENST00000337652	NM_130803.2	550	Ccg/Acg						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56438146	56438146	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0005422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	65	532	0	ENST00000407977.2:c.847C>T	p.Gln283Ter	p.Q283*	ENST00000407977		283	Cag/Tag						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70349198	70349198	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	81	335	1	ENST00000374080.3:c.3610G>T	p.Asp1204Tyr	p.D1204Y	ENST00000374080		1204	Gac/Tac						NEWRECORD																																																																									
FUBP1	8880	MSKCC	GRCh37	1	78420955	78420955	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	46	442	0	ENST00000370768.2:c.1765del	p.Tyr589ThrfsTer76	p.Y589Tfs*76	ENST00000370768	NM_003902.3	589	Tac/ac						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0007082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	177	410	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0007082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	52	479	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	2729	467	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0009344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	283	568	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110437376	110437376	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	43	42	0	ENST00000375856.3:c.1025C>G	p.Ser342Trp	p.S342W	ENST00000375856	NM_003749.2	342	tCg/tGg						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	30143261	30143261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	79	269	1	ENST00000389048.3:c.265G>A	p.Gly89Ser	p.G89S	ENST00000389048	NM_004304.4	89	Ggc/Agc						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142281088	142281088	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	119	601	0	ENST00000350721.4:c.1156G>T	p.Glu386Ter	p.E386*	ENST00000350721	NM_001184.3	386	Gag/Tag						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2962845	2962845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	188	453	1	ENST00000396946.4:c.2063G>A	p.Arg688Gln	p.R688Q	ENST00000396946	NM_032415.4	688	cGa/cAa						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15983923	15983923	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0009344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	127	471	0	ENST00000268712.3:c.3296C>G	p.Ser1099Ter	p.S1099*	ENST00000268712	NM_006311.3	1099	tCa/tGa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	286	330	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	139	294	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0007793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	264	392	2	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a						NEWRECORD																																																																									
MUTYH	4595	MSKCC	GRCh37	1	45796982	45796982	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	165	318	0	ENST00000372115.3:c.1306A>G	p.Lys436Glu	p.K436E	ENST00000372115	NM_001048171.1	436	Aag/Gag						NEWRECORD																																																																									
BMPR1A	657	MSKCC	GRCh37	10	88683229	88683229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	90	203	0	ENST00000372037.3:c.1439G>A	p.Arg480Gln	p.R480Q	ENST00000372037	NM_004329.2	480	cGg/cAg						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67473601	67473601	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	134	317	0	ENST00000327367.4:c.681C>A	p.Cys227Ter	p.C227*	ENST00000327367	NM_005902.3	227	tgC/tgA						NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14029237	14029237	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	170	470	0	ENST00000311895.7:c.1448G>T	p.Arg483Ile	p.R483I	ENST00000311895	NM_005236.2	483	aGa/aTa						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45374914	45374914	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	279	380	0	ENST00000262160.6:c.929G>C	p.Arg310Thr	p.R310T	ENST00000262160	NM_005901.5	310	aGg/aCg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112170766	112170766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	150	443	0	ENST00000257430.4:c.1862del	p.Thr621IlefsTer9	p.T621Ifs*9	ENST00000257430	NM_000038.5	621	aCt/at						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131924382	131924382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	83	165	0	ENST00000265335.6:c.1055G>A	p.Arg352His	p.R352H	ENST00000265335		352	cGt/cAt						NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36939093	36939093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	387	547	0	ENST00000361632.4:c.616G>C	p.Glu206Gln	p.E206Q	ENST00000361632		206	Gag/Cag						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106156204	106156204	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150072691		P-0005316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	216	186	2	ENST00000380013.4:c.1105C>T	p.Arg369Trp	p.R369W	ENST00000380013	NM_001127208.2	369	Cgg/Tgg						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5072550	5072550	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	222	253	0	ENST00000381652.3:c.1700T>A	p.Val567Glu	p.V567E	ENST00000381652	NM_004972.3	567	gTa/gAa						NEWRECORD																																																																									
BIRC3	330	MSKCC	GRCh37	11	102195886	102195886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	516	609	0	ENST00000263464.3:c.646G>A	p.Glu216Lys	p.E216K	ENST00000263464	NM_001165.4	216	Gaa/Aaa						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28599058	28599058	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	224	197	0	ENST00000241453.7:c.2230C>T	p.Gln744Ter	p.Q744*	ENST00000241453	NM_004119.2	744	Cag/Tag						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110437500	110437500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	241	313	0	ENST00000375856.3:c.901C>T	p.Arg301Trp	p.R301W	ENST00000375856	NM_003749.2	301	Cgg/Tgg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220578	1220578	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0005316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	144	281	0	ENST00000326873.7:c.598-2A>T		p.X200_splice	ENST00000326873	NM_000455.4	200							NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610153	10610153	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	373	448	1	ENST00000171111.5:c.557G>T	p.Gly186Val	p.G186V	ENST00000171111	NM_203500.1	186	gGc/gTc						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105243048	105243048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1122	603	438	1	ENST00000349310.3:c.235C>A	p.Gln79Lys	p.Q79K	ENST00000349310	NM_001014432.1	79	Cag/Aag						NEWRECORD																																																																									
MYC	4609	MSKCC	GRCh37	8	128752800	128752800	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	77	230	0	ENST00000377970.2:c.961C>G	p.Gln321Glu	p.Q321E	ENST00000377970	NM_002467.4	321	Cag/Gag						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151860539	151860541	+	frameshift_variant	Frame_Shift_Del	DEL	GAT	GAT	AA			P-0005570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	218	358	0	ENST00000262189.6:c.10121_10123delinsTT	p.Asn3374IlefsTer10	p.N3374Ifs*10	ENST00000262189	NM_170606.2	3374	aATCca/aTTca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0004869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	812	927	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11307962	11307962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	55	847	0	ENST00000361445.4:c.1030G>A	p.Gly344Arg	p.G344R	ENST00000361445	NM_004958.3	344	Gga/Aga						NEWRECORD																																																																									
VTCN1	79679	MSKCC	GRCh37	1	117695885	117695885	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	267	693	0	ENST00000369458.3:c.552A>C	p.Gln184His	p.Q184H	ENST00000369458	NM_024626.3	184	caA/caC						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198283294	198283294	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	284	767	0	ENST00000335508.6:c.434C>G	p.Pro145Arg	p.P145R	ENST00000335508	NM_012433.2	145	cCt/cGt						NEWRECORD																																																																									
SHQ1	55164	MSKCC	GRCh37	3	72861838	72861838	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs142487191		P-0004869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	201	657	0	ENST00000325599.8:c.1044A>G	p.Ile348Met	p.I348M	ENST00000325599	NM_018130.2	348	atA/atG						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134670540	134670540	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	230	873	1	ENST00000398015.3:c.451T>C	p.Phe151Leu	p.F151L	ENST00000398015	NM_004441.4	151	Ttt/Ctt						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152129057	152129057	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	56	875	0	ENST00000206249.3:c.10A>G	p.Thr4Ala	p.T4A	ENST00000206249	NM_000125.3	4	Acc/Gcc						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508727	106508727	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	466	665	1	ENST00000359195.3:c.721C>A	p.Pro241Thr	p.P241T	ENST00000359195	NM_002649.2	241	Ccc/Acc						NEWRECORD																																																																									
BMPR1A	657	MSKCC	GRCh37	10	88659550	88659550	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0004869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	41	486	0	ENST00000372037.3:c.334-1G>A		p.X112_splice	ENST00000372037	NM_004329.2	112							NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2106666	2106666	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772558666		P-0004869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	427	875	0	ENST00000219476.3:c.670G>A	p.Ala224Thr	p.A224T	ENST00000219476	NM_000548.3	224	Gcc/Acc						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11101973	11101973	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	629	763	1	ENST00000344626.4:c.1393G>T	p.Glu465Ter	p.E465*	ENST00000344626	NM_003072.3	465	Gag/Tag						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29553615	29553616	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TA			P-0004869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	29	569	0	ENST00000358273.4:c.2164_2165delinsTA	p.Gly722Ter	p.G722*	ENST00000358273	NM_001042492.2	722	GGg/TAg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0007057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	20	355	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	18	478	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	28	342	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	54	427	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56440715	56440715	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	81	426	0	ENST00000407977.2:c.503A>G	p.Asp168Gly	p.D168G	ENST00000407977		168	gAc/gGc						NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100617161	100617161	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0009974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	35	300	0	ENST00000308731.7:c.588G>C	p.Gln196His	p.Q196H	ENST00000308731	NM_000061.2	196	caG/caC						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577043	7577062	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCGTGGTGAGGCTCCCCT	GCTCGTGGTGAGGCTCCCCT	-			P-0009974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	68	404	0	ENST00000269305.4:c.876_895del	p.Lys292AsnfsTer7	p.K292Nfs*7	ENST00000269305	NM_001126112.2	292	aaAGGGGAGCCTCACCACGAGCtg/aatg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0005998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	104	395	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	71	269	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76855262	76855262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	54	222	0	ENST00000373344.5:c.5725G>A	p.Glu1909Lys	p.E1909K	ENST00000373344	NM_000489.3	1909	Gaa/Aaa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174516	112174520	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTG	TCCTG	-			P-0005998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	71	293	0	ENST00000257430.4:c.3226_3230del	p.Pro1076LeufsTer3	p.P1076Lfs*3	ENST00000257430	NM_000038.5	1075	taTCCTGtt/tatt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	121	440	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	48	275	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc						NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	74	397	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c						NEWRECORD																																																																									
BCL10	8915	MSKCC	GRCh37	1	85736387	85736387	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187744101		P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	86	865	0	ENST00000370580.1:c.260G>A	p.Arg87Gln	p.R87Q	ENST00000370580	NM_003921.4	87	cGg/cAg						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198267359	198267359	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	91	554	0	ENST00000335508.6:c.1998G>C	p.Lys666Asn	p.K666N	ENST00000335508	NM_012433.2	666	aaG/aaC						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8341842	8341842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	29	639	0	ENST00000356435.5:c.4798G>T	p.Asp1600Tyr	p.D1600Y	ENST00000356435		1600	Gac/Tac						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21970982	21970982	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	69	513	0	ENST00000304494.5:c.376G>T	p.Val126Phe	p.V126F	ENST00000304494	NM_000077.4	126	Gtc/Ttc						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974748	21974748	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	40	264	0	ENST00000304494.5:c.79G>T	p.Glu27Ter	p.E27*	ENST00000304494	NM_000077.4	27	Gag/Tag						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3820792	3820792	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	79	424	0	ENST00000262367.5:c.2659C>A	p.Gln887Lys	p.Q887K	ENST00000262367	NM_004380.2	887	Cag/Aag						NEWRECORD																																																																									
FLCN	201163	MSKCC	GRCh37	17	17131262	17131262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	94	553	0	ENST00000285071.4:c.190G>T	p.Ala64Ser	p.A64S	ENST00000285071	NM_144997.5	64	Gca/Tca						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5222868	5222868	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	95	259	0	ENST00000357368.4:c.2935C>T	p.Arg979Ter	p.R979*	ENST00000357368	NM_002850.3	979	Cga/Tga						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47006898	47006898	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	120	512	2	ENST00000329236.7:c.17+1G>T		p.X6_splice	ENST00000329236	NM_001204466.1	6							NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45007841	45007841	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	37	364	0	ENST00000558401.1:c.288del	p.Asp96GlufsTer7	p.D96Efs*7	ENST00000558401	NM_004048.2	96	gaT/ga						NEWRECORD																																																																									
MUTYH	4595	MSKCC	GRCh37	1	45797481	45797485	+	frameshift_variant	Frame_Shift_Del	DEL	CGAGG	CGAGG	T			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	76	464	0	ENST00000372115.3:c.992_996delinsA	p.Pro331GlnfsTer62	p.P331Qfs*62	ENST00000372115	NM_001048171.1	331	cCCTCG/cA						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151853361	151853361	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	378	406	0	ENST00000262189.6:c.11741A>G	p.Gln3914Arg	p.Q3914R	ENST00000262189	NM_170606.2	3914	cAg/cGg						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55371654	55371654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	255	514	0	ENST00000297316.4:c.344G>A	p.Arg115Gln	p.R115Q	ENST00000297316	NM_022454.3	115	cGg/cAg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	39	488	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157099187	157099195	+	inframe_deletion	In_Frame_Del	DEL	GCGGCGGCA	GCGGCGGCA	-			P-0008390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	209	333	0	ENST00000346085.5:c.133_141delGCGGCGGCA	p.Ala45_Ala47del	p.A45_A47del	ENST00000346085	NM_020732.3	42	GCGGCGGCA/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519980		P-0008390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	620	292	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061211	38061240	+	inframe_deletion	In_Frame_Del	DEL	AGTAGCAGCCGTTCTCGAACATGTTGCCGG	AGTAGCAGCCGTTCTCGAACATGTTGCCGG	-			P-0008390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	225	274	0	ENST00000250448.2:c.749_778del	p.Ser250_Tyr259del	p.S250_Y259del	ENST00000250448	NM_004496.3	250	tCCGGCAACATGTTCGAGAACGGCTGCTACTtg/ttg						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16237706	16237706	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	386	531	0	ENST00000375759.3:c.1153C>T	p.Gln385Ter	p.Q385*	ENST00000375759	NM_015001.2	385	Cag/Tag						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11123667	11123667	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1178	458	465	0	ENST00000344626.4:c.2317C>A	p.Leu773Met	p.L773M	ENST00000344626	NM_003072.3	773	Ctg/Atg						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76777865	76777865	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0008390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	767	268	0	ENST00000373344.5:c.6851del	p.Gly2284AspfsTer2	p.G2284Dfs*2	ENST00000373344	NM_000489.3	2284	gGa/ga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0004701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	182	289	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16260309	16260309	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	62	271	0	ENST00000375759.3:c.7574C>G	p.Ser2525Cys	p.S2525C	ENST00000375759	NM_015001.2	2525	tCt/tGt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27105565	27105565	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	98	472	0	ENST00000324856.7:c.5176G>T	p.Glu1726Ter	p.E1726*	ENST00000324856	NM_006015.4	1726	Gag/Tag						NEWRECORD																																																																									
MCL1	4170	MSKCC	GRCh37	1	150551876	150551876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	54	244	0	ENST00000369026.2:c.131C>T	p.Ala44Val	p.A44V	ENST00000369026	NM_021960.4	44	gCc/gTc						NEWRECORD																																																																									
FGFR4	2264	MSKCC	GRCh37	5	176524307	176524307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	198	435	1	ENST00000292408.4:c.2168G>T	p.Arg723Leu	p.R723L	ENST00000292408	NM_213647.1	723	cGt/cTt						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180056964	180056964	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	75	452	0	ENST00000261937.6:c.655C>A	p.Pro219Thr	p.P219T	ENST00000261937	NM_182925.4	219	Ccc/Acc						NEWRECORD																																																																									
FYN	2534	MSKCC	GRCh37	6	112035646	112035646	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	130	494	0	ENST00000368678.4:c.248G>T	p.Gly83Val	p.G83V	ENST00000368678		83	gGa/gTa						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145739747	145739747	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	65	389	0	ENST00000428558.2:c.1705-1G>T		p.X569_splice	ENST00000428558	NM_004260.3	569							NEWRECORD																																																																									
IGF2	3481	MSKCC	GRCh37	11	2156609	2156609	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	108	464	0	ENST00000434045.2:c.313G>T	p.Gly105Cys	p.G105C	ENST00000434045	NM_001127598.1	105	Ggc/Tgc						NEWRECORD																																																																									
CDK8	1024	MSKCC	GRCh37	13	26975663	26975663	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	29	482	0	ENST00000381527.3:c.1171C>T	p.Gln391Ter	p.Q391*	ENST00000381527	NM_001260.1	391	Caa/Taa						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32954183	32954183	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	42	478	0	ENST00000380152.3:c.9157G>C	p.Glu3053Gln	p.E3053Q	ENST00000380152		3053	Gag/Cag						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67457642	67457642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	232	494	0	ENST00000327367.4:c.452C>T	p.Pro151Leu	p.P151L	ENST00000327367	NM_005902.3	151	cCc/cTc						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39567846	39567846	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	42	251	0	ENST00000262039.4:c.602T>C	p.Ile201Thr	p.I201T	ENST00000262039	NM_002647.2	201	aTa/aCa						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10262096	10262096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	130	554	0	ENST00000340748.4:c.2195C>G	p.Ser732Cys	p.S732C	ENST00000340748		732	tCt/tGt						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76938380	76938380	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	158	527	0	ENST00000373344.5:c.2368T>G	p.Phe790Val	p.F790V	ENST00000373344	NM_000489.3	790	Ttt/Gtt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	266	437	0	ENST00000326873.7:c.650del	p.Pro217ArgfsTer70	p.P217Rfs*70	ENST00000326873	NM_000455.4	216	tCc/tc						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55955873	55955873	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	108	462	0	ENST00000263923.4:c.3289del	p.Glu1097LysfsTer5	p.E1097Kfs*5	ENST00000263923	NM_002253.2	1097	Gaa/aa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151846094	151846094	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	93	306	0	ENST00000262189.6:c.12918del	p.Ile4307SerfsTer19	p.I4307Sfs*19	ENST00000262189	NM_170606.2	4306	ccC/cc						NEWRECORD																																																																									
PNRC1	10957	MSKCC	GRCh37	6	89793598	89793606	+	inframe_deletion	In_Frame_Del	DEL	ACCAAGATC	ACCAAGATC	-			P-0004701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	95	408	0	ENST00000336032.3:c.670_678del	p.Lys224_Thr226del	p.K224_T226del	ENST00000336032	NM_006813.2	223	ACCAAGATC/-						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81332075	81332075	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-			P-0004701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	73	295	0	ENST00000222390.5:c.2011-2del		p.X671_splice	ENST00000222390	NM_000601.4	671							NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108216624	108216626	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0005554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	275	287	0	ENST00000278616.4:c.8578_8580del	p.Ser2860del	p.S2860del	ENST00000278616	NM_000051.3	2858	aCTTct/act						NEWRECORD																																																																									
SOX2	6657	MSKCC	GRCh37	3	181430864	181430864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	784	527	0	ENST00000325404.1:c.716C>A	p.Ser239Tyr	p.S239Y	ENST00000325404	NM_003106.3	239	tCc/tAc						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41729706	41729706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	203	640	0	ENST00000242208.4:c.823G>T	p.Gly275Cys	p.G275C	ENST00000242208	NM_002192.2	275	Ggt/Tgt						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8338983	8338983	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	212	493	0	ENST00000356435.5:c.5318C>A	p.Pro1773His	p.P1773H	ENST00000356435		1773	cCc/cAc						NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103514736	103514736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	182	394	0	ENST00000355739.4:c.1237G>A	p.Gly413Arg	p.G413R	ENST00000355739	NM_000123.3	413	Ggg/Agg						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16062108	16062108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	520	486	0	ENST00000268712.3:c.698G>T	p.Arg233Leu	p.R233L	ENST00000268712	NM_006311.3	233	cGc/cTc						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39576601	39576601	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0005554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	297	330	0	ENST00000262039.4:c.892-1G>A		p.X298_splice	ENST00000262039	NM_002647.2	298							NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220706	1220706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	528	338	0	ENST00000326873.7:c.724G>A	p.Gly242Arg	p.G242R	ENST00000326873	NM_000455.4	242	Ggg/Agg						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600008	10600008	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	553	423	0	ENST00000171111.5:c.1568G>T	p.Gly523Val	p.G523V	ENST00000171111	NM_203500.1	523	gGg/gTg						NEWRECORD																																																																									
CDK8	1024	MSKCC	GRCh37	13	26970431	26970431	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	366	481	1	ENST00000381527.3:c.802del	p.Glu268LysfsTer3	p.E268Kfs*3	ENST00000381527	NM_001260.1	267	tGg/tg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006969-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	58	450	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
FYN	2534	MSKCC	GRCh37	6	111983042	111983042	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006969-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1223	79	842	0	ENST00000368678.4:c.1505A>G	p.Lys502Arg	p.K502R	ENST00000368678		502	aAg/aGg						NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52724365	52724365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006969-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	84	526	0	ENST00000322088.6:c.1497G>A	p.Met499Ile	p.M499I	ENST00000322088	NM_014225.5	499	atG/atA						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9543542	9543542	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006969-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	93	586	2	ENST00000353224.5:c.1612A>T	p.Thr538Ser	p.T538S	ENST00000353224	NM_177990.2	538	Acc/Tcc						NEWRECORD																																																																									
CRLF2	64109	MSKCC	GRCh37	X	1325437	1325437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006969-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	116	522	0	ENST00000381566.1:c.238C>T	p.His80Tyr	p.H80Y	ENST00000381566		80	Cac/Tac						NEWRECORD																																																																									
VHL	7428	MSKCC	GRCh37	3	10191507	10191507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	149	444	1	ENST00000256474.2:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000256474	NM_000551.3	167	cGg/cAg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0008428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	37	601	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8518010	8518010	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	60	709	0	ENST00000356435.5:c.1381C>T	p.Gln461Ter	p.Q461*	ENST00000356435		461	Caa/Taa						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47034444	47034444	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	64	364	0	ENST00000329236.7:c.298G>T	p.Glu100Ter	p.E100*	ENST00000329236	NM_001204466.1	100	Gag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0006896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	238	546	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt						NEWRECORD																																																																									
MUTYH	4595	MSKCC	GRCh37	1	45798449	45798449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	232	640	0	ENST00000372115.3:c.520G>A	p.Glu174Lys	p.E174K	ENST00000372115	NM_001048171.1	174	Gag/Aag						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134920381	134920381	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	196	629	0	ENST00000398015.3:c.2196G>C	p.Met732Ile	p.M732I	ENST00000398015	NM_004441.4	732	atG/atC						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49037969	49037969	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0006896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	99	428	0	ENST00000267163.4:c.2209G>T	p.Glu737Ter	p.E737*	ENST00000267163	NM_000321.2	737	Gag/Tag						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110435612	110435612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	544	184	1	ENST00000375856.3:c.2789G>A	p.Arg930His	p.R930H	ENST00000375856	NM_003749.2	930	cGc/cAc						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105241417	105241417	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	225	512	0	ENST00000349310.3:c.563C>G	p.Ala188Gly	p.A188G	ENST00000349310	NM_001014432.1	188	gCc/gGc						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23646717	23646717	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	130	582	0	ENST00000261584.4:c.1150G>T	p.Glu384Ter	p.E384*	ENST00000261584	NM_024675.3	384	Gaa/Taa						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31387129	31387129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	170	398	0	ENST00000328111.2:c.1754C>T	p.Ala585Val	p.A585V	ENST00000328111	NM_006892.3	585	gCg/gTg						NEWRECORD																																																																									
ERG	2078	MSKCC	GRCh37	21	39755665	39755665	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	132	587	1	ENST00000288319.7:c.1100G>T	p.Arg367Leu	p.R367L	ENST00000288319	NM_182918.3	367	cGc/cTc						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145739890	145739956	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACGGTGGCAGGCCAGACACCTGCAAATGCAGGAGCGACAGCCGTCATACGCCAGCCCAGCCCTGGC	CACGGTGGCAGGCCAGACACCTGCAAATGCAGGAGCGACAGCCGTCATACGCCAGCCCAGCCCTGGC	-			P-0006896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	92	497	0	ENST00000428558.2:c.1621-47_1640del		p.X541_splice	ENST00000428558	NM_004260.3	541							NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27059204	27059210	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCCCC	CAGCCCC	-			P-0006896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	134	562	0	ENST00000324856.7:c.1842_1848del	p.Ala615GlnfsTer2	p.A615Qfs*2	ENST00000324856	NM_006015.4	614	tCAGCCCCc/tc						NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14021950	14021950	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	123	371	0	ENST00000311895.7:c.650C>G	p.Ser217Cys	p.S217C	ENST00000311895	NM_005236.2	217	tCt/tGt						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2199905	2199905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	115	488	0	ENST00000398665.3:c.674C>T	p.Ser225Leu	p.S225L	ENST00000398665	NM_032482.2	225	tCa/tTa						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412017	116412034	+	inframe_deletion	In_Frame_Del	DEL	TAGACTACCGAGCTACTT	TAGACTACCGAGCTACTT	-			P-0006941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	102	336	0	ENST00000397752.3:c.3003_3020del	p.Asp1002_Phe1007del	p.D1002_F1007del	ENST00000397752	NM_000245.2	1001	gTAGACTACCGAGCTACTTtt/gtt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	242	246	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55371662	55371662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	59	241	0	ENST00000297316.4:c.352G>A	p.Val118Met	p.V118M	ENST00000297316	NM_022454.3	118	Gtg/Atg						NEWRECORD																																																																									
RPS6KA4	8986	MSKCC	GRCh37	11	64138778	64138778	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	153	388	0	ENST00000334205.4:c.2145G>C	p.Glu715Asp	p.E715D	ENST00000334205	NM_003942.2	715	gaG/gaC						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37881426	37881426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	386	207	0	ENST00000269571.5:c.2618A>G	p.Asp873Gly	p.D873G	ENST00000269571		873	gAc/gGc						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36231802	36231802	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	458	406	1	ENST00000300305.3:c.582A>T	p.Lys194Asn	p.K194N	ENST00000300305		194	aaA/aaT						NEWRECORD																																																																									
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0009181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	144	124	0	ENST00000412916.2:c.165+1del		p.X55_splice	ENST00000412916		55							NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0007555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	65	475	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0007555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	160	438	0	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	198	327	0	ENST00000256078.4:c.436G>C	p.Ala146Pro	p.A146P	ENST00000256078	NM_033360.2	146	Gca/Cca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	298	672	0	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52643504	52643504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	177	532	0	ENST00000394830.3:c.2392A>G	p.Arg798Gly	p.R798G	ENST00000394830	NM_018313.4	798	Aga/Gga						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98238332	98238332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	171	379	0	ENST00000331920.6:c.1712G>A	p.Arg571Gln	p.R571Q	ENST00000331920	NM_000264.3	571	cGg/cAg						NEWRECORD																																																																									
SMARCD1	6602	MSKCC	GRCh37	12	50480542	50480542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	97	488	0	ENST00000394963.4:c.412C>T	p.Arg138Cys	p.R138C	ENST00000394963	NM_003076.4	138	Cgt/Tgt						NEWRECORD																																																																									
STAT5B	6777	MSKCC	GRCh37	17	40354464	40354464	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0009851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	224	605	0	ENST00000293328.3:c.2131T>G	p.Phe711Val	p.F711V	ENST00000293328	NM_012448.3	711	Ttt/Gtt						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42041534	42041534	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1236	356	841	0	ENST00000219905.7:c.5731del	p.Ser1911AlafsTer12	p.S1911Afs*12	ENST00000219905	NM_001164273.1	1910	cAa/ca						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175464	112175468	+	frameshift_variant	Frame_Shift_Del	DEL	TTCAC	TTCAC	-			P-0009851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	266	394	0	ENST00000257430.4:c.4175_4179del	p.Ser1392Ter	p.S1392*	ENST00000257430	NM_000038.5	1391	agTTCACtt/agtt						NEWRECORD																																																																									
LMO1	4004	MSKCC	GRCh37	11	8252007	8252007	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	308	368	0	ENST00000335790.3:c.70T>A	p.Cys24Ser	p.C24S	ENST00000335790	NM_002315.2	24	Tgt/Agt						NEWRECORD																																																																									
PDCD1	5133	MSKCC	GRCh37	2	242794359	242794359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	504	535	1	ENST00000334409.5:c.583G>A	p.Ala195Thr	p.A195T	ENST00000334409	NM_005018.2	195	Gcc/Acc						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57478803	57478803	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	190	347	0	ENST00000371085.3:c.389A>G	p.Tyr130Cys	p.Y130C	ENST00000371085	NM_000516.4	130	tAc/tGc						NEWRECORD																																																																									
GATA1	2623	MSKCC	GRCh37	X	48650870	48650870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	273	275	0	ENST00000376670.3:c.739C>T	p.Arg247Cys	p.R247C	ENST00000376670	NM_002049.3	247	Cgc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912660		P-0009753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	567	723	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	27	429	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0006397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	41	345	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	236	366	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8525003	8525003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	120	375	1	ENST00000356435.5:c.601G>A	p.Asp201Asn	p.D201N	ENST00000356435		201	Gac/Aac						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100922182	100922182	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1716	185	519	0	ENST00000325455.5:c.2330A>T	p.Tyr777Phe	p.Y777F	ENST00000325455	NM_001202474.3	777	tAt/tTt						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21562696	21562696	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	17	156	0	ENST00000382592.4:c.1223C>G	p.Ser408Cys	p.S408C	ENST00000382592	NM_014572.2	408	tCc/tGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0006835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	43	358	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114920452	114920452	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0006835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1153	73	566	0	ENST00000543371.1:c.1391+2T>C		p.X464_splice	ENST00000543371	NM_001198531.1	464							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	91	350	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226595555	226595555	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	75	440	0	ENST00000366794.5:c.76G>C	p.Glu26Gln	p.E26Q	ENST00000366794	NM_001618.3	26	Gag/Cag						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39937175	39937175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	102	254	0	ENST00000378444.4:c.8C>T	p.Ser3Leu	p.S3L	ENST00000378444	NM_001123385.1	3	tCa/tTa						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212248780	212248780	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	28	222	0	ENST00000342788.4:c.3487C>G	p.Leu1163Val	p.L1163V	ENST00000342788	NM_005235.2	1163	Ctg/Gtg						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215617244	215617244	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	102	549	0	ENST00000260947.4:c.1604A>T	p.Asp535Val	p.D535V	ENST00000260947	NM_000465.2	535	gAt/gTt						NEWRECORD																																																																									
FOXP1	27086	MSKCC	GRCh37	3	71096124	71096124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	130	487	0	ENST00000318789.4:c.633G>T	p.Gln211His	p.Q211H	ENST00000318789	NM_032682.5	211	caG/caT						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134851787	134851787	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	169	459	0	ENST00000398015.3:c.1193C>G	p.Ala398Gly	p.A398G	ENST00000398015	NM_004441.4	398	gCc/gGc						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134960025	134960025	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	127	481	0	ENST00000398015.3:c.2382G>T	p.Glu794Asp	p.E794D	ENST00000398015	NM_004441.4	794	gaG/gaT						NEWRECORD																																																																									
FGFR4	2264	MSKCC	GRCh37	5	176519385	176519385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	119	477	0	ENST00000292408.4:c.791G>T	p.Gly264Val	p.G264V	ENST00000292408	NM_213647.1	264	gGc/gTc						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30675723	30675723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1312	93	768	0	ENST00000376406.3:c.2633G>T	p.Gly878Val	p.G878V	ENST00000376406	NM_014641.2	878	gGg/gTg						NEWRECORD																																																																									
CDKN1A	1026	MSKCC	GRCh37	6	36652159	36652159	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	56	408	0	ENST00000244741.5:c.281G>C	p.Arg94Pro	p.R94P	ENST00000244741	NM_000389.4	94	cGg/cCg						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	94068124	94068124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	184	785	0	ENST00000369303.4:c.838G>T	p.Gly280Cys	p.G280C	ENST00000369303	NM_004440.3	280	Ggc/Tgc						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50459486	50459486	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	97	500	0	ENST00000331340.3:c.775G>C	p.Glu259Gln	p.E259Q	ENST00000331340	NM_006060.4	259	Gag/Cag						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55372141	55372141	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	16	139	0	ENST00000297316.4:c.831G>T	p.Glu277Asp	p.E277D	ENST00000297316	NM_022454.3	277	gaG/gaT						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8376039	8376039	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	55	519	0	ENST00000356435.5:c.4558C>A	p.Pro1520Thr	p.P1520T	ENST00000356435		1520	Cct/Act						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70405020	70405020	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	65	503	0	ENST00000373644.4:c.2534A>T	p.His845Leu	p.H845L	ENST00000373644	NM_030625.2	845	cAt/cTt						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	150	578	0	ENST00000267101.3:c.889G>C	p.Asp297His	p.D297H	ENST00000267101	NM_001982.3	297	Gat/Cat						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57865122	57865122	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1427	299	951	0	ENST00000228682.2:c.2599C>A	p.Gln867Lys	p.Q867K	ENST00000228682	NM_005269.2	867	Cag/Aag						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28578211	28578211	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	125	559	0	ENST00000241453.7:c.2960A>T	p.Gln987Leu	p.Q987L	ENST00000241453	NM_004119.2	987	cAg/cTg						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32969038	32969038	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	97	662	0	ENST00000380152.3:c.9469G>C	p.Glu3157Gln	p.E3157Q	ENST00000380152		3157	Gag/Cag						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73340135	73340135	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	90	425	0	ENST00000377767.4:c.1945A>G	p.Ile649Val	p.I649V	ENST00000377767	NM_014953.3	649	Ata/Gta						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110437376	110437376	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	22	97	0	ENST00000375856.3:c.1025C>G	p.Ser342Trp	p.S342W	ENST00000375856	NM_003749.2	342	tCg/tGg						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23647047	23647047	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	104	559	0	ENST00000261584.4:c.820A>T	p.Thr274Ser	p.T274S	ENST00000261584	NM_024675.3	274	Act/Tct						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23647305	23647305	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	110	450	1	ENST00000261584.4:c.562G>T	p.Ala188Ser	p.A188S	ENST00000261584	NM_024675.3	188	Gct/Tct						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72830288	72830288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1095	60	690	2	ENST00000268489.5:c.6293C>T	p.Ser2098Leu	p.S2098L	ENST00000268489	NM_006885.3	2098	tCg/tTg						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37618422	37618422	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	136	530	0	ENST00000447079.4:c.98G>C	p.Arg33Thr	p.R33T	ENST00000447079	NM_015083.1	33	aGa/aCa						NEWRECORD																																																																									
HOXB13	10481	MSKCC	GRCh37	17	46805429	46805429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1554	214	858	1	ENST00000290295.7:c.527G>T	p.Gly176Val	p.G176V	ENST00000290295	NM_006361.5	176	gGt/gTt						NEWRECORD																																																																									
CD79B	974	MSKCC	GRCh37	17	62007222	62007222	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	132	487	0	ENST00000392795.3:c.460C>A	p.Gln154Lys	p.Q154K	ENST00000392795	NM_001039933.1	154	Cag/Aag						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600046	10600046	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	126	381	0	ENST00000171111.5:c.1532-2A>G		p.X511_splice	ENST00000171111	NM_203500.1	511							NEWRECORD																																																																									
PIK3R2	5296	MSKCC	GRCh37	19	18279935	18279935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	184	435	0	ENST00000222254.8:c.2018C>T	p.Thr673Met	p.T673M	ENST00000222254	NM_005027.3	673	aCg/aTg						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42796856	42796856	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	202	610	0	ENST00000575354.2:c.3314C>G	p.Ser1105Ter	p.S1105*	ENST00000575354	NM_015125.3	1105	tCa/tGa						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41076903	41076903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	132	640	0	ENST00000373198.4:c.1517G>T	p.Trp506Leu	p.W506L	ENST00000373198	NM_133170.3	506	tGg/tTg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41514546	41514546	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	110	488	1	ENST00000373198.4:c.115A>C	p.Ser39Arg	p.S39R	ENST00000373198	NM_133170.3	39	Agc/Cgc						NEWRECORD																																																																									
NCOA3	8202	MSKCC	GRCh37	20	46256423	46256423	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1277	232	971	0	ENST00000371998.3:c.651G>T	p.Met217Ile	p.M217I	ENST00000371998		217	atG/atT						NEWRECORD																																																																									
CRLF2	64109	MSKCC	GRCh37	X	1321349	1321349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	82	532	0	ENST00000381566.1:c.406G>T	p.Val136Leu	p.V136L	ENST00000381566		136	Gtg/Ttg						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11152106	11152106	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	189	558	0	ENST00000344626.4:c.4294del	p.Asp1432ThrfsTer31	p.D1432Tfs*31	ENST00000344626	NM_003072.3	1432	Gac/ac						NEWRECORD																																																																									
EZH2	2146	MSKCC	GRCh37	7	148529793	148529794	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	C			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	102	507	0	ENST00000320356.2:c.295_296delinsG	p.Lys99GlyfsTer3	p.K99Gfs*3	ENST00000320356	NM_004456.4	99	AAg/Gg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0008534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	144	478	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256532	115256532	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	92	567	0	ENST00000369535.4:c.179G>T	p.Gly60Val	p.G60V	ENST00000369535	NM_002524.4	60	gGa/gTa						NEWRECORD																																																																									
PIK3CB	5291	MSKCC	GRCh37	3	138374269	138374269	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	76	635	1	ENST00000289153.2:c.3175T>G	p.Trp1059Gly	p.W1059G	ENST00000289153	NM_006219.2	1059	Tgg/Ggg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40944562	40944562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	51	341	1	ENST00000373198.4:c.1940C>T	p.Ser647Leu	p.S647L	ENST00000373198	NM_133170.3	647	tCg/tTg						NEWRECORD																																																																									
FOXP1	27086	MSKCC	GRCh37	3	71021734	71021734	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	116	660	0	ENST00000318789.4:c.1624del	p.Gln542LysfsTer57	p.Q542Kfs*57	ENST00000318789	NM_032682.5	542	Caa/aa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174641	112174641	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	93	696	0	ENST00000257430.4:c.3350del	p.Ser1117LeufsTer9	p.S1117Lfs*9	ENST00000257430	NM_000038.5	1117	tCt/tt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	510	379	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921566	178921566	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793349		P-0005652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	181	295	0	ENST00000263967.3:c.1048G>A	p.Asp350Asn	p.D350N	ENST00000263967	NM_006218.2	350	Gac/Aac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0005652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	378	630	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604741	48604749	+	inframe_deletion	In_Frame_Del	DEL	ACCTTGCTG	ACCTTGCTG	-			P-0005652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	243	532	0	ENST00000342988.3:c.1563_1571del	p.Pro522_Trp524del	p.P522_W524del	ENST00000342988	NM_005359.5	521	acACCTTGCTGg/acg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	111	270	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	64	491	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0007866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	35	209	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa						NEWRECORD																																																																									
GATA2	2624	MSKCC	GRCh37	3	128200723	128200723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	96	488	1	ENST00000341105.2:c.1082G>A	p.Arg361His	p.R361H	ENST00000341105	NM_032638.4	361	cGc/cAc						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32910405	32910405	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0007866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	42	567	0	ENST00000380152.3:c.1913T>A	p.Leu638Ter	p.L638*	ENST00000380152		638	tTa/tAa						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40735547	40735547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	297	315	0	ENST00000373198.4:c.3326G>A	p.Arg1109Gln	p.R1109Q	ENST00000373198	NM_133170.3	1109	cGg/cAg						NEWRECORD																																																																									
NCOA3	8202	MSKCC	GRCh37	20	46281149	46281149	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0007866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1382	94	653	0	ENST00000371998.3:c.3947-1G>A		p.X1316_splice	ENST00000371998		1316							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	154	329	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25458581	25458581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1084	85	363	0	ENST00000264709.3:c.2592G>A	p.Met864Ile	p.M864I	ENST00000264709	NM_175629.2	864	atG/atA						NEWRECORD																																																																									
EED	8726	MSKCC	GRCh37	11	85968615	85968615	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	79	380	0	ENST00000263360.6:c.611A>G	p.Asn204Ser	p.N204S	ENST00000263360	NM_003797.3	204	aAt/aGt						NEWRECORD																																																																									
ARAF	369	MSKCC	GRCh37	X	47426531	47426531	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0006916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	87	424	0	ENST00000377045.4:c.873+1G>T		p.X291_splice	ENST00000377045	NM_001654.4	291							NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009982-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	286	371	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67589663	67589663	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0009982-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	98	240	0	ENST00000274335.5:c.1425+1G>A		p.X475_splice	ENST00000274335		475							NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133760997	133760997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009982-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	325	429	0	ENST00000318560.5:c.3320G>A	p.Gly1107Asp	p.G1107D	ENST00000318560	NM_005157.4	1107	gGt/gAt						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73336068	73336068	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009982-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	155	331	0	ENST00000377767.4:c.2335A>T	p.Ile779Phe	p.I779F	ENST00000377767	NM_014953.3	779	Att/Ttt						NEWRECORD																																																																									
HIST1H3H	8357	MSKCC	GRCh37	6	27778200	27778200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1885	411	1177	1	ENST00000369163.2:c.349C>T	p.Arg117Trp	p.R117W	ENST00000369163	NM_003536.2	117	Cgg/Tgg						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68867274	68867274	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	136	404	0	ENST00000261769.5:c.2521G>T	p.Glu841Ter	p.E841*	ENST00000261769	NM_004360.3	841	Gaa/Taa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578284	7578297	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCAGACCTAAGAGC	CCAGACCTAAGAGC	-			P-0005864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	134	452	1	ENST00000269305.4:c.560-8_565del		p.X187_splice	ENST00000269305	NM_001126112.2	187							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	135	350	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519893		P-0005391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	177	551	1	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	26101034	26101034	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0005391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	461	551	0	ENST00000435504.4:c.57+1G>C		p.X19_splice	ENST00000435504		19							NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32937426	32937426	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0005391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	106	366	0	ENST00000380152.3:c.8087T>A	p.Leu2696Ter	p.L2696*	ENST00000380152		2696	tTg/tAg						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67482864	67482864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	193	325	0	ENST00000327367.4:c.1268G>T	p.Ser423Ile	p.S423I	ENST00000327367	NM_005902.3	423	aGt/aTt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49425755	49425755	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	126	435	0	ENST00000301067.7:c.12733del	p.Glu4245SerfsTer33	p.E4245Sfs*33	ENST00000301067	NM_003482.3	4245	Gag/ag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0006398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	258	431	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0006398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	113	503	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974678	21974678	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0006398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	164	419	0	ENST00000304494.5:c.149A>G	p.Gln50Arg	p.Q50R	ENST00000304494	NM_000077.4	50	cAg/cGg						NEWRECORD																																																																									
TRAF7	84231	MSKCC	GRCh37	16	2223315	2223315	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	112	441	0	ENST00000326181.6:c.927C>A	p.Asp309Glu	p.D309E	ENST00000326181	NM_032271.2	309	gaC/gaA						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31022915	31022915	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	99	514	0	ENST00000375687.4:c.2400T>G	p.Asp800Glu	p.D800E	ENST00000375687	NM_015338.5	800	gaT/gaG						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76907626	76907626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	159	612	0	ENST00000373344.5:c.4535G>A	p.Arg1512His	p.R1512H	ENST00000373344	NM_000489.3	1512	cGt/cAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	188	518	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0005430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	273	578	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt						NEWRECORD																																																																									
H3F3C	440093	MSKCC	GRCh37	12	31944829	31944829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	793	885	0	ENST00000340398.3:c.272C>T	p.Ala91Val	p.A91V	ENST00000340398	NM_001013699.2	91	gCg/gTg						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66467650	66467650	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0005430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	79	454	0	ENST00000273854.3:c.619A>T	p.Lys207Ter	p.K207*	ENST00000273854	NM_004439.5	207	Aaa/Taa						NEWRECORD																																																																									
CHEK1	1111	MSKCC	GRCh37	11	125503225	125503225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	79	447	0	ENST00000428830.2:c.592C>T	p.Leu198Phe	p.L198F	ENST00000428830	NM_001114121.2	198	Ctt/Ttt						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32937434	32937434	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	104	612	1	ENST00000380152.3:c.8095A>G	p.Asn2699Asp	p.N2699D	ENST00000380152		2699	Aat/Gat						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88727490	88727490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	164	603	2	ENST00000360948.2:c.289G>A	p.Val97Met	p.V97M	ENST00000360948	NM_001012338.2	97	Gtg/Atg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1223055	1223055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	135	741	2	ENST00000326873.7:c.992G>A	p.Arg331Gln	p.R331Q	ENST00000326873	NM_000455.4	331	cGg/cAg						NEWRECORD																																																																									
MYCN	4613	MSKCC	GRCh37	2	16086193	16086195	+	missense_variant	Missense_Mutation	ONP	AAA	AAA	TAT			P-0005430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	64	456	0	ENST00000281043.3:c.1369_1371delinsTAT	p.Lys457Tyr	p.K457Y	ENST00000281043	NM_005378.4	457	AAA/TAT						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176637555	176637556	+	missense_variant	Missense_Mutation	DNP	GC	GC	CT			P-0005430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	173	492	0	ENST00000439151.2:c.2155_2156delinsCT	p.Ala719Leu	p.A719L	ENST00000439151	NM_022455.4	719	GCa/CTa						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913396		P-0009565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	363	485	0	ENST00000349496.5:c.95A>T	p.Asp32Val	p.D32V	ENST00000349496	NM_001904.3	32	gAc/gTc						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29456515	29456515	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1387	175	652	0	ENST00000389048.3:c.2403A>G	p.Ile801Met	p.I801M	ENST00000389048	NM_004304.4	801	atA/atG						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70333944	70333944	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	153	412	0	ENST00000373644.4:c.1849C>T	p.Gln617Ter	p.Q617*	ENST00000373644	NM_030625.2	617	Cag/Tag						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76938499	76938501	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0009565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	95	294	0	ENST00000373344.5:c.2247_2249del	p.Ser750del	p.S750del	ENST00000373344	NM_000489.3	749	tcTTCa/tca						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061227	38061241	+	inframe_deletion	In_Frame_Del	DEL	GAACATGTTGCCGGA	GAACATGTTGCCGGA	-			P-0009565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	100	383	0	ENST00000250448.2:c.748_762del	p.Ser250_Phe254del	p.S250_F254del	ENST00000250448	NM_004496.3	250	TCCGGCAACATGTTC/-						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0006729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	50	351	2	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0006729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	33	284	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123181301	123181301	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	53	576	0	ENST00000218089.9:c.765G>C	p.Met255Ile	p.M255I	ENST00000218089	NM_001042749.1	255	atG/atC						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	95	422	0	ENST00000269305.4:c.838delA	p.Arg280GlufsTer65	p.R280Efs*65	ENST00000269305	NM_001126112.2	280	Aga/ga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0009149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	194	655	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	146	490	0	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67473779	67473779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	149	401	0	ENST00000327367.4:c.859C>T	p.Arg287Trp	p.R287W	ENST00000327367	NM_005902.3	287	Cgg/Tgg						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76940012	76940012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	150	326	0	ENST00000373344.5:c.736C>T	p.Arg246Cys	p.R246C	ENST00000373344	NM_000489.3	246	Cgc/Tgc						NEWRECORD																																																																									
SDHB	6390	MSKCC	GRCh37	1	17350503	17350503	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201517260		P-0009149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	165	508	2	ENST00000375499.3:c.607G>A	p.Gly203Arg	p.G203R	ENST00000375499	NM_003000.2	203	Gga/Aga						NEWRECORD																																																																									
EIF4E	1977	MSKCC	GRCh37	4	99823108	99823108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	59	486	0	ENST00000280892.6:c.104C>T	p.Pro35Leu	p.P35L	ENST00000280892	NM_001130678.1	35	cCg/cTg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175322	112175322	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	105	325	0	ENST00000257430.4:c.4031C>A	p.Ser1344Ter	p.S1344*	ENST00000257430	NM_000038.5	1344	tCa/tAa						NEWRECORD																																																																									
FGFR1	2260	MSKCC	GRCh37	8	38271216	38271216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	74	259	0	ENST00000425967.3:c.2492C>T	p.Pro831Leu	p.P831L	ENST00000425967	NM_001174067.1	831	cCg/cTg						NEWRECORD																																																																									
STK40	83931	MSKCC	GRCh37	1	36820008	36820008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	215	366	0	ENST00000373129.3:c.580G>A	p.Val194Met	p.V194M	ENST00000373129	NM_032017.1	194	Gtg/Atg						NEWRECORD																																																																									
JUN	3725	MSKCC	GRCh37	1	59248468	59248468	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	37	304	0	ENST00000371222.2:c.275C>A	p.Pro92Gln	p.P92Q	ENST00000371222	NM_002228.3	92	cCg/cAg						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47162932	47162932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	31	321	0	ENST00000409792.3:c.3194G>A	p.Arg1065His	p.R1065H	ENST00000409792	NM_014159.6	1065	cGt/cAt						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187557196	187557196	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	30	245	0	ENST00000441802.2:c.4166T>C	p.Leu1389Pro	p.L1389P	ENST00000441802	NM_005245.3	1389	cTt/cCt						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150023075	150023075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	46	378	2	ENST00000253339.5:c.188G>A	p.Arg63Gln	p.R63Q	ENST00000253339		63	cGa/cAa						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139399389	139399389	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	26	297	0	ENST00000277541.6:c.4754T>C	p.Leu1585Pro	p.L1585P	ENST00000277541	NM_017617.3	1585	cTg/cCg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108200958	108200958	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	30	203	0	ENST00000278616.4:c.7325A>G	p.Gln2442Arg	p.Q2442R	ENST00000278616	NM_000051.3	2442	cAg/cGg						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	461439	461439	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	153	348	0	ENST00000399788.2:c.1081T>C	p.Tyr361His	p.Y361H	ENST00000399788	NM_001042603.1	361	Tat/Cat						NEWRECORD																																																																									
RAD52	5893	MSKCC	GRCh37	12	1023111	1023111	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	210	349	0	ENST00000358495.3:c.1144A>C	p.Lys382Gln	p.K382Q	ENST00000358495	NM_134424.2	382	Aaa/Caa						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57857835	57857835	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	72	478	0	ENST00000228682.2:c.154A>G	p.Ser52Gly	p.S52G	ENST00000228682	NM_005269.2	52	Agt/Ggt						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	29004242	29004242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	127	296	1	ENST00000282397.4:c.1051C>T	p.Arg351Trp	p.R351W	ENST00000282397	NM_002019.4	351	Cgg/Tgg						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48941741	48941741	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	15	149	0	ENST00000267163.4:c.1049+2T>C		p.X350_splice	ENST00000267163	NM_000321.2	350							NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061532	38061532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	22	182	0	ENST00000250448.2:c.457G>A	p.Ala153Thr	p.A153T	ENST00000250448	NM_004496.3	153	Gcg/Acg						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2129586	2129586	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	40	363	0	ENST00000219476.3:c.3313A>G	p.Thr1105Ala	p.T1105A	ENST00000219476	NM_000548.3	1105	Acc/Gcc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519991		P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	292	231	1	ENST00000269305.4:c.536A>C	p.His179Pro	p.H179P	ENST00000269305	NM_001126112.2	179	cAt/cCt						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17945728	17945728	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	36	311	0	ENST00000458235.1:c.2132T>C	p.Phe711Ser	p.F711S	ENST00000458235	NM_000215.3	711	tTc/tCc						NEWRECORD																																																																									
ZRSR2	8233	MSKCC	GRCh37	X	15840905	15840905	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	45	231	0	ENST00000307771.7:c.989A>G	p.His330Arg	p.H330R	ENST00000307771	NM_005089.3	330	cAt/cGt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	42	354	1	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg						NEWRECORD																																																																									
CBL	867	MSKCC	GRCh37	11	119145604	119145604	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	41	298	2	ENST00000264033.4:c.815del	p.Leu272Ter	p.L272*	ENST00000264033	NM_005188.3	270	gcT/gc						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139390649	139390650	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	376	483	0	ENST00000277541.6:c.7541_7542delCT	p.Pro2514ArgfsTer4	p.P2514Rfs*4	ENST00000277541	NM_017617.3	2514	cCT/c						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18491390	18491390	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	39	230	0	ENST00000266497.5:c.1309del	p.Ile437TyrfsTer5	p.I437Yfs*5	ENST00000266497		435	Aaa/aa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0008259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	330	624	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	132	371	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa						NEWRECORD																																																																									
JUN	3725	MSKCC	GRCh37	1	59247958	59247958	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	189	542	0	ENST00000371222.2:c.785A>G	p.Asn262Ser	p.N262S	ENST00000371222	NM_002228.3	262	aAc/aGc						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110436320	110436320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	34	105	0	ENST00000375856.3:c.2081C>T	p.Ala694Val	p.A694V	ENST00000375856	NM_003749.2	694	gCc/gTc						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89882964	89882964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	28	203	0	ENST00000389301.3:c.60G>T	p.Arg20Ser	p.R20S	ENST00000389301	NM_000135.2	20	agG/agT						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			31	12	432	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98212179	98212179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	11	1240	0	ENST00000331920.6:c.3493C>T	p.Leu1165Phe	p.L1165F	ENST00000331920	NM_000264.3	1165	Ctc/Ttc						NEWRECORD																																																																									
RPS6KA4	8986	MSKCC	GRCh37	11	64132912	64132912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			66	36	1032	0	ENST00000334205.4:c.1046C>T	p.Pro349Leu	p.P349L	ENST00000334205	NM_003942.2	349	cCa/cTa						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95557688	95557688	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	19	617	0	ENST00000343455.3:c.5379G>C	p.Glu1793Asp	p.E1793D	ENST00000343455	NM_177438.2	1793	gaG/gaC						NEWRECORD																																																																									
AXL	558	MSKCC	GRCh37	19	41727920	41727920	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138094666		P-0006479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			34	20	1010	5	ENST00000301178.4:c.545C>T	p.Thr182Met	p.T182M	ENST00000301178	NM_021913.4	182	aCg/aTg						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1153	117	439	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0005553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1633	534	571	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0005553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	1009	548	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16075166	16075166	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	474	449	0	ENST00000268712.3:c.386T>C	p.Leu129Ser	p.L129S	ENST00000268712	NM_006311.3	129	tTa/tCa						NEWRECORD																																																																									
TMPRSS2	7113	MSKCC	GRCh37	21	42839668	42839668	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	83	615	1	ENST00000398585.3:c.1571A>T	p.Gln524Leu	p.Q524L	ENST00000398585	NM_001135099.1	524	cAa/cTa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579531	7579531	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	496	583	0	ENST00000269305.4:c.156delA	p.Gln52HisfsTer71	p.Q52Hfs*71	ENST00000269305	NM_001126112.2	52	caA/ca						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0009957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	150	374	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	78	374	0	ENST00000269305.4:c.314G>A	p.Gly105Asp	p.G105D	ENST00000269305	NM_001126112.2	105	gGc/gAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0009957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	118	420	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185161355	185161355	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	123	481	0	ENST00000265026.3:c.782C>G	p.Thr261Arg	p.T261R	ENST00000265026	NM_004721.4	261	aCa/aGa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	159	275	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47041007	47041007	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	58	164	0	ENST00000329236.7:c.1303G>T	p.Glu435Ter	p.E435*	ENST00000329236	NM_001204466.1	435	Gag/Tag						NEWRECORD																																																																									
CUL3	8452	MSKCC	GRCh37	2	225346609	225346609	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0009442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	64	328	0	ENST00000264414.4:c.2029G>T	p.Val677Phe	p.V677F	ENST00000264414	NM_003590.4	677	Gtt/Ttt						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55154995	55154995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	94	379	1	ENST00000257290.5:c.2704G>A	p.Asp902Asn	p.D902N	ENST00000257290	NM_006206.4	902	Gat/Aat						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70405044	70405044	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1114	78	357	0	ENST00000373644.4:c.2558G>T	p.Gly853Val	p.G853V	ENST00000373644	NM_030625.2	853	gGt/gTt						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28913338	28913338	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0009442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1303	84	456	0	ENST00000282397.4:c.2455A>T	p.Lys819Ter	p.K819*	ENST00000282397	NM_002019.4	819	Aag/Tag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0006606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	554	415	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185183564	185183564	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	196	410	0	ENST00000265026.3:c.1418A>G	p.Glu473Gly	p.E473G	ENST00000265026	NM_004721.4	473	gAg/gGg						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11141565	11141565	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	125	364	1	ENST00000344626.4:c.3542A>G	p.His1181Arg	p.H1181R	ENST00000344626	NM_003072.3	1181	cAc/cGc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	263	429	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174784	112174784	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0006933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	101	449	1	ENST00000257430.4:c.3493A>T	p.Lys1165Ter	p.K1165*	ENST00000257430	NM_000038.5	1165	Aaa/Taa						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99185133	99185133	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0006933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	239	398	2	ENST00000074304.5:c.2533+2T>C		p.X845_splice	ENST00000074304	NM_001134224.1	845							NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76813002	76813002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	263	547	0	ENST00000373344.5:c.6619C>T	p.Leu2207Phe	p.L2207F	ENST00000373344	NM_000489.3	2207	Ctt/Ttt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112157627	112157628	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0006933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	119	485	0	ENST00000257430.4:c.1354_1355del	p.Val452SerfsTer7	p.V452Sfs*7	ENST00000257430	NM_000038.5	449	gcTGtg/gctg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0008224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	90	458	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	44	403	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212248369	212248369	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	60	351	0	ENST00000342788.4:c.3898C>A	p.Pro1300Thr	p.P1300T	ENST00000342788	NM_005235.2	1300	Cct/Act						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63412361	63412361	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	73	304	0	ENST00000330258.3:c.806A>T	p.His269Leu	p.H269L	ENST00000330258	NM_152424.3	269	cAt/cTt						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91293119	91293119	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	50	274	0	ENST00000355112.3:c.623del	p.Leu208CysfsTer11	p.L208Cfs*11	ENST00000355112	NM_000057.2	207	gaT/ga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	314	448	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187627818	187627818	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149283579		P-0008330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1141	366	649	0	ENST00000441802.2:c.3164C>T	p.Thr1055Met	p.T1055M	ENST00000441802	NM_005245.3	1055	aCg/aTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0009923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	563	435	1	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47162323	47162323	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	133	288	0	ENST00000409792.3:c.3803C>G	p.Ser1268Cys	p.S1268C	ENST00000409792	NM_014159.6	1268	tCt/tGt						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47162506	47162506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	149	417	1	ENST00000409792.3:c.3620C>T	p.Ser1207Phe	p.S1207F	ENST00000409792	NM_014159.6	1207	tCt/tTt						NEWRECORD																																																																									
ETV6	2120	MSKCC	GRCh37	12	11803063	11803063	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0009923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	178	248	0	ENST00000396373.4:c.2T>A	p.Met1?	p.M1?	ENST00000396373	NM_001987.4	1	aTg/aAg						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48878058	48878058	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	88	144	0	ENST00000267163.4:c.10A>T	p.Lys4Ter	p.K4*	ENST00000267163	NM_000321.2	4	Aaa/Taa						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89371748	89371748	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	223	412	0	ENST00000301030.4:c.92A>G	p.Lys31Arg	p.K31R	ENST00000301030	NM_001256183.1	31	aAa/aGa						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098999	178099697	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTATGTTTAAGACAAAAAAAGGAAGGAGAGAGCTCATGTTTTTTAAATGACAGATACCACATAAATTAATTCACATTATGCCACTGTTGATGGTGGGAAGTGGGGAGATTACAAATACAATCTAAATGAGAACACAGATCCAATGTTCTAGAAGAGCACAGTTAATTCCATTCAATGAATCTATTCATTAAAGACAACAAACAACCTACAAACACATAGCCATCCATTCTAATCACTTGGATCATTAATGATAGGGTGATGGTAGAGGTCACTAAAGGGCAAAGTCACAAATGGTTTGAATGAGAAGAAATCCCACCCTTGTTTAATGGAATATAGAAATTAGAGCAAGCACTCTAAGCCACTGGCTTATATAAGAGAAGTGGGGTCTGGAAAACATTACTGAATACATGGAGTTTTCTTTAAACTTTGCTCAGCAAATATCCAGTTTATAGAGGGATAACTCTCAAGTTAAAGTGTCAATCTAGCAGTTGTGAAATATCACCATTCTTTCCATCTTTCCTACACTAGATTATCTTCTCCCCATCACTGCTTGCTACTCTTATCTCTGTGGCTTACCTATATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACCTGAGGTCTGGAGTTCGAGATCAGCCTGGCCAACATGGTGAAACCACGTCTCTACTAAAAATACAAAAATCA	CCTATGTTTAAGACAAAAAAAGGAAGGAGAGAGCTCATGTTTTTTAAATGACAGATACCACATAAATTAATTCACATTATGCCACTGTTGATGGTGGGAAGTGGGGAGATTACAAATACAATCTAAATGAGAACACAGATCCAATGTTCTAGAAGAGCACAGTTAATTCCATTCAATGAATCTATTCATTAAAGACAACAAACAACCTACAAACACATAGCCATCCATTCTAATCACTTGGATCATTAATGATAGGGTGATGGTAGAGGTCACTAAAGGGCAAAGTCACAAATGGTTTGAATGAGAAGAAATCCCACCCTTGTTTAATGGAATATAGAAATTAGAGCAAGCACTCTAAGCCACTGGCTTATATAAGAGAAGTGGGGTCTGGAAAACATTACTGAATACATGGAGTTTTCTTTAAACTTTGCTCAGCAAATATCCAGTTTATAGAGGGATAACTCTCAAGTTAAAGTGTCAATCTAGCAGTTGTGAAATATCACCATTCTTTCCATCTTTCCTACACTAGATTATCTTCTCCCCATCACTGCTTGCTACTCTTATCTCTGTGGCTTACCTATATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACCTGAGGTCTGGAGTTCGAGATCAGCCTGGCCAACATGGTGAAACCACGTCTCTACTAAAAATACAAAAATCA	-			P-0009923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	46	224	0	ENST00000397062.3:c.46-698_46del		p.X16_splice	ENST00000397062	NM_006164.4	16							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0006780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	43	201	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519942		P-0006780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	120	321	0	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18534717	18534717	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	80	449	0	ENST00000266497.5:c.1775C>G	p.Ser592Cys	p.S592C	ENST00000266497		592	tCt/tGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578502	7578502	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	159	523	0	ENST00000269305.4:c.428T>G	p.Val143Gly	p.V143G	ENST00000269305	NM_001126112.2	143	gTg/gGg						NEWRECORD																																																																									
ERG	2078	MSKCC	GRCh37	21	39763596	39763596	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	126	433	1	ENST00000288319.7:c.856C>T	p.Gln286Ter	p.Q286*	ENST00000288319	NM_182918.3	286	Cag/Tag						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39931643	39931643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	217	557	2	ENST00000378444.4:c.2956G>A	p.Ala986Thr	p.A986T	ENST00000378444	NM_001123385.1	986	Gca/Aca						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123199747	123199747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	163	568	0	ENST00000218089.9:c.2047G>A	p.Asp683Asn	p.D683N	ENST00000218089	NM_001042749.1	683	Gat/Aat						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717749	89717749	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	59	231	0	ENST00000371953.3:c.775del	p.His259ThrfsTer7	p.H259Tfs*7	ENST00000371953	NM_000314.4	258	ttC/tt						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	129	382	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	573	624	0	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag						NEWRECORD																																																																									
INHA	3623	MSKCC	GRCh37	2	220439743	220439743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1418	282	922	0	ENST00000243786.2:c.596G>A	p.Arg199His	p.R199H	ENST00000243786	NM_002191.3	199	cGc/cAc						NEWRECORD																																																																									
CUL3	8452	MSKCC	GRCh37	2	225422552	225422552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	60	188	0	ENST00000264414.4:c.88G>T	p.Val30Leu	p.V30L	ENST00000264414	NM_003590.4	30	Gta/Tta						NEWRECORD																																																																									
PRDM1	639	MSKCC	GRCh37	6	106553680	106553680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	60	367	0	ENST00000369096.4:c.1645C>T	p.Leu549Phe	p.L549F	ENST00000369096	NM_001198.3	549	Ctc/Ttc						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42041596	42041596	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1399	253	912	1	ENST00000219905.7:c.5791G>T	p.Val1931Phe	p.V1931F	ENST00000219905	NM_001164273.1	1931	Gtt/Ttt						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81957192	81957192	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	216	607	1	ENST00000359376.3:c.2410G>T	p.Gly804Trp	p.G804W	ENST00000359376	NM_002661.3	804	Ggg/Tgg						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59876618	59876618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	54	237	0	ENST00000259008.2:c.1183G>A	p.Ala395Thr	p.A395T	ENST00000259008	NM_032043.2	395	Gct/Act						NEWRECORD																																																																									
SMARCB1	6598	MSKCC	GRCh37	22	24167550	24167550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	146	363	0	ENST00000263121.7:c.934G>T	p.Ala312Ser	p.A312S	ENST00000263121	NM_003073.3	312	Gca/Tca						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63411395	63411395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	197	285	0	ENST00000330258.3:c.1772G>T	p.Arg591Met	p.R591M	ENST00000330258	NM_152424.3	591	aGg/aTg						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56174807	56174807	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0002131-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			84	101	330	0	ENST00000399503.3:c.1969del	p.Thr657HisfsTer2	p.T657Hfs*2	ENST00000399503	NM_005921.1	656	Aaa/aa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0007317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	24	454	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	77	423	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0007279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	142	589	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0007279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	107	394	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga						NEWRECORD																																																																									
FOXL2	668	MSKCC	GRCh37	3	138665048	138665048	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			12	16	18	0	ENST00000330315.3:c.517G>T	p.Ala173Ser	p.A173S	ENST00000330315	NM_023067.3	173	Gca/Tca						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76764082	76764082	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	35	289	0	ENST00000373344.5:c.7226T>G	p.Leu2409Arg	p.L2409R	ENST00000373344	NM_000489.3	2409	cTt/cGt						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65305384	65305384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	48	282	0	ENST00000342505.4:c.2744G>A	p.Gly915Glu	p.G915E	ENST00000342505	NM_002227.2	915	gGa/gAa						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65305391	65305391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	46	277	0	ENST00000342505.4:c.2737G>A	p.Glu913Lys	p.E913K	ENST00000342505	NM_002227.2	913	Gag/Aag						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140476761	140476761	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	24	198	0	ENST00000288602.6:c.1645G>C	p.Glu549Gln	p.E549Q	ENST00000288602	NM_004333.4	549	Gag/Cag						NEWRECORD																																																																									
ARAF	369	MSKCC	GRCh37	X	47430284	47430284	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	44	249	0	ENST00000377045.4:c.1559T>C	p.Phe520Ser	p.F520S	ENST00000377045	NM_001654.4	520	tTt/tCt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005629-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			372	105	356	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
DAXX	1616	MSKCC	GRCh37	6	33287478	33287478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005629-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			414	22	323	0	ENST00000374542.5:c.1619C>T	p.Pro540Leu	p.P540L	ENST00000374542	NM_001141970.1	540	cCc/cTc						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47044971	47044971	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005629-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			416	63	506	0	ENST00000329236.7:c.2063G>C	p.Arg688Pro	p.R688P	ENST00000329236	NM_001204466.1	688	cGc/cCc						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11136172	11136172	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005629-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			390	40	437	1	ENST00000344626.4:c.3157del	p.Gln1053SerfsTer53	p.Q1053Sfs*53	ENST00000344626	NM_003072.3	1052	ttC/tt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207037	1207037	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005629-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			424	123	400	0	ENST00000326873.7:c.127del	p.Ala43ProfsTer8	p.A43Pfs*8	ENST00000326873	NM_000455.4	42	cGg/cg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108188188	108188194	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAACT	AAGAACT	TC			P-0005629-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			313	62	440	0	ENST00000278616.4:c.6287_6293delinsTC	p.Glu2096ValfsTer29	p.E2096Vfs*29	ENST00000278616	NM_000051.3	2096	gAAGAACTt/gTCt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	56	305	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0007521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	22	237	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat						NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45007695	45007705	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGGGTTTCA	TCTGGGTTTCA	-			P-0007521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	55	278	0	ENST00000558401.1:c.144_154del	p.Gly49IlefsTer4	p.G49Ifs*4	ENST00000558401	NM_004048.2	48	TCTGGGTTTCAt/t						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	174	580	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974732	21974732	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	158	442	0	ENST00000304494.5:c.95T>C	p.Leu32Pro	p.L32P	ENST00000304494	NM_000077.4	32	cTg/cCg						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30715660	30715660	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	162	507	0	ENST00000359013.4:c.1393G>T	p.Glu465Ter	p.E465*	ENST00000359013	NM_001024847.2	465	Gag/Tag						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117622211	117622211	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	231	734	0	ENST00000368508.3:c.6659A>T	p.Asn2220Ile	p.N2220I	ENST00000368508	NM_002944.2	2220	aAt/aTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579700	7579703	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0008790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	168	623	0	ENST00000269305.4:c.93_96del	p.Leu32ProfsTer11	p.L32Pfs*11	ENST00000269305	NM_001126112.2	31	gtTCTG/gt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0008757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	284	415	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0008757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	289	499	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg						NEWRECORD																																																																									
MST1R	4486	MSKCC	GRCh37	3	49929229	49929229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	249	854	1	ENST00000296474.3:c.3314C>T	p.Ala1105Val	p.A1105V	ENST00000296474	NM_002447.2	1105	gCc/gTc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242471	55242471	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	285	484	0	ENST00000275493.2:c.2241A>C	p.Leu747Phe	p.L747F	ENST00000275493	NM_005228.3	747	ttA/ttC						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11313987	11313987	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	183	724	0	ENST00000361445.4:c.749C>G	p.Ala250Gly	p.A250G	ENST00000361445	NM_004958.3	250	gCc/gGc						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131895027	131895027	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	83	389	0	ENST00000265335.6:c.181A>C	p.Thr61Pro	p.T61P	ENST00000265335		61	Acc/Ccc						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115796	8115796	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1284	245	833	3	ENST00000346208.3:c.1142C>A	p.Ser381Ter	p.S381*	ENST00000346208		381	tCa/tAa						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88483910	88483910	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	144	669	4	ENST00000360948.2:c.1660C>A	p.Leu554Met	p.L554M	ENST00000360948	NM_001012338.2	554	Ctg/Atg						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88576106	88576106	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	170	703	1	ENST00000360948.2:c.1567T>A	p.Cys523Ser	p.C523S	ENST00000360948	NM_001012338.2	523	Tgc/Agc						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29553474	29553474	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	245	608	3	ENST00000358273.4:c.2023G>T	p.Gly675Ter	p.G675*	ENST00000358273	NM_001042492.2	675	Gga/Tga						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29556193	29556193	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	72	265	2	ENST00000358273.4:c.2560C>T	p.Gln854Ter	p.Q854*	ENST00000358273	NM_001042492.2	854	Cag/Tag						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	8	622	0	ENST00000326873.7:c.580G>A	p.Asp194Asn	p.D194N	ENST00000326873	NM_000455.4	194	Gac/Aac						NEWRECORD																																																																									
IRS1	3667	MSKCC	GRCh37	2	227660894	227660894	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs13306470		P-0008863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	86	413	0	ENST00000305123.5:c.2561G>T	p.Arg854Leu	p.R854L	ENST00000305123	NM_005544.2	854	cGc/cTc						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11291387	11291387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	148	432	0	ENST00000361445.4:c.2619G>T	p.Lys873Asn	p.K873N	ENST00000361445	NM_004958.3	873	aaG/aaT						NEWRECORD																																																																									
MYCN	4613	MSKCC	GRCh37	2	16085854	16085854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	97	294	0	ENST00000281043.3:c.1030G>T	p.Ala344Ser	p.A344S	ENST00000281043	NM_005378.4	344	Gca/Tca						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118376544	118376544	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	80	340	1	ENST00000534358.1:c.9937G>C	p.Ala3313Pro	p.A3313P	ENST00000534358	NM_005933.3	3313	Gct/Cct						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18544079	18544079	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	52	357	2	ENST00000266497.5:c.1896G>T	p.Trp632Cys	p.W632C	ENST00000266497		632	tgG/tgT						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67644821	67644821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	84	333	0	ENST00000264010.4:c.86G>A	p.Arg29Gln	p.R29Q	ENST00000264010	NM_006565.3	29	cGg/cAg						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11141487	11141487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	175	473	0	ENST00000344626.4:c.3464G>T	p.Ser1155Ile	p.S1155I	ENST00000344626	NM_003072.3	1155	aGc/aTc						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66189862	66189862	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	55	459	0	ENST00000273854.3:c.3084del	p.Gln1029SerfsTer3	p.Q1029Sfs*3	ENST00000273854	NM_004439.5	1028	gtG/gt						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52685779	52685779	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	150	554	0	ENST00000394830.3:c.693del	p.Thr232ProfsTer21	p.T232Pfs*21	ENST00000394830	NM_018313.4	231	aaG/aa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578540	7578542	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0008863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	158	338	1	ENST00000269305.4:c.388_390del	p.Leu130del	p.L130del	ENST00000269305	NM_001126112.2	130	CTC/-						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	598	377	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0008837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	335	417	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg						NEWRECORD																																																																									
IKBKE	9641	MSKCC	GRCh37	1	206648258	206648258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	135	448	0	ENST00000367120.3:c.279C>A	p.Ser93Arg	p.S93R	ENST00000367120	NM_014002.3	93	agC/agA						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25972769	25972769	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	269	446	0	ENST00000435504.4:c.1656A>C	p.Lys552Asn	p.K552N	ENST00000435504		552	aaA/aaC						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66361130	66361130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	336	423	0	ENST00000273854.3:c.1042G>T	p.Asp348Tyr	p.D348Y	ENST00000273854	NM_004439.5	348	Gat/Tat						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112177095	112177095	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	212	568	0	ENST00000257430.4:c.5804A>T	p.Gln1935Leu	p.Q1935L	ENST00000257430	NM_000038.5	1935	cAg/cTg						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30680734	30680734	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1078	152	448	0	ENST00000376406.3:c.985A>T	p.Ser329Cys	p.S329C	ENST00000376406	NM_014641.2	329	Agc/Tgc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8526642	8526642	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0008837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	137	269	0	ENST00000356435.5:c.553G>T	p.Gly185Cys	p.G185C	ENST00000356435		185	Ggt/Tgt						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101891194	101891194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	439	392	2	ENST00000374994.4:c.155G>T	p.Gly52Val	p.G52V	ENST00000374994	NM_004612.2	52	gGg/gTg						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73346976	73346976	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0008837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	330	309	0	ENST00000377767.4:c.1241G>T	p.Gly414Val	p.G414V	ENST00000377767	NM_014953.3	414	gGa/gTa						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2111880	2111880	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	103	353	0	ENST00000219476.3:c.1128C>G	p.Asp376Glu	p.D376E	ENST00000219476	NM_000548.3	376	gaC/gaG						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3820576	3820576	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	155	191	0	ENST00000262367.5:c.2875A>G	p.Thr959Ala	p.T959A	ENST00000262367	NM_004380.2	959	Aca/Gca						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72993714	72993714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	180	462	1	ENST00000268489.5:c.331G>A	p.Glu111Lys	p.E111K	ENST00000268489	NM_006885.3	111	Gag/Aag						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81972475	81972475	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	231	705	0	ENST00000359376.3:c.3268T>A	p.Cys1090Ser	p.C1090S	ENST00000359376	NM_002661.3	1090	Tgt/Agt						NEWRECORD																																																																									
RAD51C	5889	MSKCC	GRCh37	17	56770089	56770089	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	141	393	0	ENST00000337432.4:c.85T>C	p.Ser29Pro	p.S29P	ENST00000337432	NM_058216.2	29	Tct/Cct						NEWRECORD																																																																									
RPTOR	57521	MSKCC	GRCh37	17	78897336	78897336	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	454	400	0	ENST00000306801.3:c.2671G>T	p.Asp891Tyr	p.D891Y	ENST00000306801	NM_020761.2	891	Gat/Tat						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5212059	5212059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	103	364	0	ENST00000357368.4:c.4972G>A	p.Ala1658Thr	p.A1658T	ENST00000357368	NM_002850.3	1658	Gca/Aca						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135781059	135781083	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTGTTTCCTTTTGCTTTCTTTAA	CTGTGTTTCCTTTTGCTTTCTTTAA	-			P-0008837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	417	622	0	ENST00000298552.3:c.1882_1906del	p.Leu628ArgfsTer17	p.L628Rfs*17	ENST00000298552	NM_001162426.1	628	TTAAAGAAAGCAAAAGGAAACACAGag/ag						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63533104	63533104	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	558	397	0	ENST00000307078.5:c.1790del	p.Gly597GlufsTer92	p.G597Efs*92	ENST00000307078	NM_004655.3	597	gGa/ga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	31	400	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0006141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	20	440	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0006141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	47	449	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	334	392	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0006968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	677	347	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40743865	40743865	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758531464		P-0006968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	272	471	0	ENST00000373198.4:c.3130G>A	p.Val1044Ile	p.V1044I	ENST00000373198	NM_133170.3	1044	Gtc/Atc						NEWRECORD																																																																									
KMT2D	8085	MSKCC	GRCh37	12	49420289	49420289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768551828		P-0006968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	266	497	2	ENST00000301067.7:c.15460C>T	p.Arg5154Trp	p.R5154W	ENST00000301067	NM_003482.3	5154	Cgg/Tgg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112154963	112154963	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	204	473	0	ENST00000257430.4:c.1234C>T	p.Gln412Ter	p.Q412*	ENST00000257430	NM_000038.5	412	Cag/Tag						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117709139	117709139	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	217	419	0	ENST00000368508.3:c.1818G>T	p.Gln606His	p.Q606H	ENST00000368508	NM_002944.2	606	caG/caT						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114920438	114920438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	556	635	2	ENST00000543371.1:c.1379G>A	p.Cys460Tyr	p.C460Y	ENST00000543371	NM_001198531.1	460	tGc/tAc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591807	48591807	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	214	423	0	ENST00000342988.3:c.970T>C	p.Cys324Arg	p.C324R	ENST00000342988	NM_005359.5	324	Tgt/Cgt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	197	390	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11123722	11123722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	229	485	1	ENST00000344626.4:c.2372C>T	p.Ala791Val	p.A791V	ENST00000344626	NM_003072.3	791	gCg/gTg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	176	376	0	ENST00000326873.7:c.709G>T	p.Asp237Tyr	p.D237Y	ENST00000326873	NM_000455.4	237	Gac/Tac						NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56875696	56875696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	186	776	0	ENST00000308159.5:c.2300G>A	p.Ser767Asn	p.S767N	ENST00000308159	NM_014669.4	767	aGt/aAt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602583	10602583	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	168	480	0	ENST00000171111.5:c.995del	p.Gly332AlafsTer68	p.G332Afs*68	ENST00000171111	NM_203500.1	332	gGc/gc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	213	262	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0007287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	109	402	1	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56161281	56161281	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	67	208	0	ENST00000399503.3:c.1150G>A	p.Glu384Lys	p.E384K	ENST00000399503	NM_005921.1	384	Gag/Aag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174412	112174412	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	67	280	0	ENST00000257430.4:c.3121C>T	p.Gln1041Ter	p.Q1041*	ENST00000257430	NM_000038.5	1041	Caa/Taa						NEWRECORD																																																																									
E2F3	1871	MSKCC	GRCh37	6	20480083	20480083	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	100	340	1	ENST00000346618.3:c.400C>T	p.Arg134Ter	p.R134*	ENST00000346618	NM_001949.4	134	Cga/Tga						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46243362	46243362	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0007287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	94	341	0	ENST00000334344.6:c.1716-1G>C		p.X572_splice	ENST00000334344	NM_152641.2	572							NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2110684	2110684	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140910086		P-0007287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	183	420	0	ENST00000219476.3:c.989C>T	p.Pro330Leu	p.P330L	ENST00000219476	NM_000548.3	330	cCg/cTg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916949	+	inframe_deletion	In_Frame_Del	DEL	AAGATC	AAGATC	-			P-0007287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	156	595	0	ENST00000263967.3:c.331_336delAAGATC	p.Lys111_Ile112del	p.K111_I112del	ENST00000263967	NM_006218.2	111	AAGATC/-						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	298	342	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
HIST3H3	8290	MSKCC	GRCh37	1	228612761	228612761	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1461	415	850	1	ENST00000366696.1:c.266C>A	p.Ala89Asp	p.A89D	ENST00000366696	NM_003493.2	89	gCc/gAc						NEWRECORD																																																																									
IRS1	3667	MSKCC	GRCh37	2	227661764	227661764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	160	207	0	ENST00000305123.5:c.1691G>T	p.Ser564Ile	p.S564I	ENST00000305123	NM_005544.2	564	aGt/aTt						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176636977	176636977	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	238	340	0	ENST00000439151.2:c.1577G>T	p.Arg526Met	p.R526M	ENST00000439151	NM_022455.4	526	aGg/aTg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108214050	108214050	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	186	364	0	ENST00000278616.4:c.8370A>T	p.Arg2790Ser	p.R2790S	ENST00000278616	NM_000051.3	2790	agA/agT						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108216560	108216560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	406	431	1	ENST00000278616.4:c.8509G>A	p.Glu2837Lys	p.E2837K	ENST00000278616	NM_000051.3	2837	Gaa/Aaa						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57861127	57861127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1283	201	619	0	ENST00000228682.2:c.924C>A	p.Cys308Ter	p.C308*	ENST00000228682	NM_005269.2	308	tgC/tgA						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1219321	1219321	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0009289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	237	379	0	ENST00000326873.7:c.375-2A>T		p.X125_splice	ENST00000326873	NM_000455.4	125							NEWRECORD																																																																									
BCL2L1	598	MSKCC	GRCh37	20	30309774	30309774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	95	273	0	ENST00000307677.4:c.248T>C	p.Met83Thr	p.M83T	ENST00000307677	NM_138578.1	83	aTg/aCg						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31368176	31368176	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	165	506	0	ENST00000328111.2:c.47G>T	p.Gly16Val	p.G16V	ENST00000328111	NM_006892.3	16	gGg/gTg						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36164462	36164463	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0009289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	44	137	0	ENST00000300305.3:c.1412_1413del	p.Arg471ProfsTer128	p.R471Pfs*128	ENST00000300305		471	cGC/c						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0008292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	113	327	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70338621	70338628	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTGAGC	TCTTGAGC	G			P-0008292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	120	474	0	ENST00000374080.3:c.17_24delinsG	p.Ile6SerfsTer7	p.I6Sfs*7	ENST00000374080		6	aTCTTGAGC/aG						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0009182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	125	376	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16258511	16258511	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	118	282	0	ENST00000375759.3:c.5776C>T	p.Gln1926Ter	p.Q1926*	ENST00000375759	NM_015001.2	1926	Caa/Taa						NEWRECORD																																																																									
FH	2271	MSKCC	GRCh37	1	241667432	241667432	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1473	228	576	0	ENST00000366560.3:c.1018A>G	p.Asn340Asp	p.N340D	ENST00000366560	NM_000143.3	340	Aat/Gat						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46243895	46243908	+	frameshift_variant	Frame_Shift_Del	DEL	TGCAACACAAATGT	TGCAACACAAATGT	-			P-0009182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	149	396	0	ENST00000334344.6:c.1989_2002del	p.Ala664PhefsTer38	p.A664Ffs*38	ENST00000334344	NM_152641.2	663	acTGCAACACAAATGTct/acct						NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	162864359	162864361	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0009182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	131	325	0	ENST00000366898.1:c.152_154del	p.Arg51del	p.R51del	ENST00000366898	NM_004562.2	51	aGGAat/aat						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0006116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	57	489	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0006116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	76	477	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc						NEWRECORD																																																																									
SOCS1	8651	MSKCC	GRCh37	16	11348785	11348785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	14	171	1	ENST00000332029.2:c.551C>T	p.Ala184Val	p.A184V	ENST00000332029	NM_003745.1	184	gCc/gTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0005196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	293	419	0	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga						NEWRECORD																																																																									
EIF4A2	1974	MSKCC	GRCh37	3	186503671	186503671	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0005196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	568	331	0	ENST00000323963.5:c.349-1G>T		p.X117_splice	ENST00000323963		117							NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55972008	55972008	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	244	230	0	ENST00000263923.4:c.1636C>T	p.His546Tyr	p.H546Y	ENST00000263923	NM_002253.2	546	Cac/Tac						NEWRECORD																																																																									
IFNGR1	3459	MSKCC	GRCh37	6	137525471	137525471	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0005196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	391	230	0	ENST00000367739.4:c.544G>T	p.Glu182Ter	p.E182*	ENST00000367739	NM_000416.2	182	Gag/Tag						NEWRECORD																																																																									
SUZ12	23512	MSKCC	GRCh37	17	30264392	30264392	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	134	109	0	ENST00000322652.5:c.127G>T	p.Gly43Cys	p.G43C	ENST00000322652	NM_015355.2	43	Ggc/Tgc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	139	405	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
RFWD2	64326	MSKCC	GRCh37	1	176132973	176132973	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	94	414	0	ENST00000367669.3:c.620T>G	p.Leu207Trp	p.L207W	ENST00000367669	NM_022457.5	207	tTg/tGg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0001357-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			618	2372	362	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577098	7577098	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001357-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			839	115	448	0	ENST00000269305.4:c.840A>T	p.Arg280Ser	p.R280S	ENST00000269305	NM_001126112.2	280	agA/agT						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2946306	2946306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001357-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			625	196	372	0	ENST00000396946.4:c.3431G>T	p.Arg1144Leu	p.R1144L	ENST00000396946	NM_032415.4	1144	cGc/cTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0001357-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			628	229	362	0	ENST00000269305.4:c.783-1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261							NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70117570	70117570	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001357-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			683	45	352	0	ENST00000245479.2:c.38A>C	p.Glu13Ala	p.E13A	ENST00000245479	NM_000346.3	13	gAg/gCg						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11152044	11152044	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001357-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			361	164	264	0	ENST00000344626.4:c.4232G>T	p.Arg1411Leu	p.R1411L	ENST00000344626	NM_003072.3	1411	cGg/cTg						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	249	196	0	ENST00000397062.3:c.92G>A	p.Gly31Glu	p.G31E	ENST00000397062	NM_006164.4	31	gGa/gAa						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	288	212	0	ENST00000397062.3:c.101G>A	p.Arg34Gln	p.R34Q	ENST00000397062	NM_006164.4	34	cGa/cAa						NEWRECORD																																																																									
HRAS	3265	MSKCC	GRCh37	11	534285	534285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	545	293	0	ENST00000311189.7:c.38G>T	p.Gly13Val	p.G13V	ENST00000311189		13	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	493	419	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa						NEWRECORD																																																																									
SDHB	6390	MSKCC	GRCh37	1	17350566	17350566	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201928318		P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	194	284	1	ENST00000375499.3:c.544G>A	p.Gly182Arg	p.G182R	ENST00000375499	NM_003000.2	182	Ggg/Agg						NEWRECORD																																																																									
PIK3R3	8503	MSKCC	GRCh37	1	46543223	46543223	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	230	416	0	ENST00000262741.5:c.278C>G	p.Ser93Ter	p.S93*	ENST00000262741	NM_003629.3	93	tCa/tGa						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52437669	52437669	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	590	595	0	ENST00000460680.1:c.1492G>C	p.Glu498Gln	p.E498Q	ENST00000460680	NM_004656.3	498	Gag/Cag						NEWRECORD																																																																									
EIF4A2	1974	MSKCC	GRCh37	3	186503816	186503816	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1284	144	563	0	ENST00000323963.5:c.493G>C	p.Asp165His	p.D165H	ENST00000323963		165	Gat/Cat						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153332882	153332882	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	132	231	0	ENST00000281708.4:c.74C>G	p.Ser25Ter	p.S25*	ENST00000281708	NM_033632.3	25	tCa/tGa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151879199	151879199	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	496	469	1	ENST00000262189.6:c.5746A>T	p.Arg1916Ter	p.R1916*	ENST00000262189	NM_170606.2	1916	Aga/Tga						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118343567	118343567	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	210	252	0	ENST00000534358.1:c.1693C>G	p.Leu565Val	p.L565V	ENST00000534358	NM_005933.3	565	Ctg/Gtg						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89349176	89349176	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	760	772	0	ENST00000301030.4:c.3774G>C	p.Glu1258Asp	p.E1258D	ENST00000301030	NM_001256183.1	1258	gaG/gaC						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16004865	16004865	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	288	294	0	ENST00000268712.3:c.2389G>C	p.Asp797His	p.D797H	ENST00000268712	NM_006311.3	797	Gat/Cat						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37687486	37687486	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	207	226	0	ENST00000447079.4:c.4390C>G	p.Gln1464Glu	p.Q1464E	ENST00000447079	NM_015083.1	1464	Cag/Gag						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11114071	11114071	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	555	425	0	ENST00000344626.4:c.1999G>A	p.Glu667Lys	p.E667K	ENST00000344626	NM_003072.3	667	Gag/Aag						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48916833	48916833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	188	200	0	ENST00000267163.4:c.363del	p.Asn123ThrfsTer2	p.N123Tfs*2	ENST00000267163	NM_000321.2	121	caG/ca						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143081624	143081625	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	AG			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	157	399	0	ENST00000262992.4:c.1449_1450delinsCT	p.Lys483_Lys484delinsAsnTer	p.K483_K484delinsN*	ENST00000262992	NM_001101669.1	483	aaGAag/aaCTag						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0009817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	118	365	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21994278	21994278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	87	337	0	ENST00000361570.3:c.176C>T	p.Pro59Leu	p.P59L	ENST00000361570	NM_058195.3	59	cCg/cTg						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696467	47696467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	110	301	0	ENST00000347630.2:c.356G>A	p.Ser119Asn	p.S119N	ENST00000347630	NM_001007230.1	119	aGt/aAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0006329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	43	363	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	199	428	0	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg						NEWRECORD																																																																									
CXCR4	7852	MSKCC	GRCh37	2	136872498	136872498	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1223	227	706	1	ENST00000241393.3:c.1000C>T	p.Arg334Ter	p.R334*	ENST00000241393	NM_003467.2	334	Cga/Tga						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68862107	68862107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	80	435	0	ENST00000261769.5:c.2195G>A	p.Arg732Gln	p.R732Q	ENST00000261769	NM_004360.3	732	cGg/cAg						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47039629	47039629	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	374	192	0	ENST00000329236.7:c.847C>T	p.Gln283Ter	p.Q283*	ENST00000329236	NM_001204466.1	283	Cag/Tag						NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36932119	36932119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1455	173	592	0	ENST00000361632.4:c.2350C>T	p.Pro784Ser	p.P784S	ENST00000361632		784	Ccc/Tcc						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153245391	153245391	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	111	320	0	ENST00000281708.4:c.1800T>G	p.Asp600Glu	p.D600E	ENST00000281708	NM_033632.3	600	gaT/gaG						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153258954	153258954	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	100	329	0	ENST00000281708.4:c.861G>T	p.Glu287Asp	p.E287D	ENST00000281708	NM_033632.3	287	gaG/gaT						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112137007	112137007	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0006329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	47	349	1	ENST00000257430.4:c.761C>G	p.Ser254Ter	p.S254*	ENST00000257430	NM_000038.5	254	tCa/tGa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174394	112174394	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	83	307	0	ENST00000257430.4:c.3103C>T	p.Gln1035Ter	p.Q1035*	ENST00000257430	NM_000038.5	1035	Cag/Tag						NEWRECORD																																																																									
TRAF2	7186	MSKCC	GRCh37	9	139820303	139820303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1294	291	610	1	ENST00000247668.2:c.1456C>T	p.Arg486Trp	p.R486W	ENST00000247668	NM_021138.3	486	Cgg/Tgg						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5222760	5222760	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199829286		P-0006329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	35	205	0	ENST00000357368.4:c.3043C>T	p.Arg1015Cys	p.R1015C	ENST00000357368	NM_002850.3	1015	Cgc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574002	7574002	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	97	602	0	ENST00000269305.4:c.1025G>C	p.Arg342Pro	p.R342P	ENST00000269305	NM_001126112.2	342	cGa/cCa						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009958-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	305	241	1	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42797786	42797786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009958-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	59	402	0	ENST00000575354.2:c.3838G>A	p.Gly1280Arg	p.G1280R	ENST00000575354	NM_015125.3	1280	Ggg/Agg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604754	48604754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009958-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	85	450	0	ENST00000342988.3:c.1576G>A	p.Glu526Lys	p.E526K	ENST00000342988	NM_005359.5	526	Gaa/Aaa						NEWRECORD																																																																									
MST1R	4486	MSKCC	GRCh37	3	49924966	49924966	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009958-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	99	464	1	ENST00000296474.3:c.3977C>A	p.Ala1326Glu	p.A1326E	ENST00000296474	NM_002447.2	1326	gCa/gAa						NEWRECORD																																																																									
FGFR4	2264	MSKCC	GRCh37	5	176522348	176522348	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009958-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	85	387	1	ENST00000292408.4:c.1537G>T	p.Asp513Tyr	p.D513Y	ENST00000292408	NM_213647.1	513	Gac/Tac						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135772068	135772068	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009958-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	22	157	0	ENST00000298552.3:c.3049G>C	p.Glu1017Gln	p.E1017Q	ENST00000298552	NM_001162426.1	1017	Gag/Cag						NEWRECORD																																																																									
BMPR1A	657	MSKCC	GRCh37	10	88649842	88649842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009958-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	46	258	0	ENST00000372037.3:c.91C>T	p.His31Tyr	p.H31Y	ENST00000372037	NM_004329.2	31	Cat/Tat						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18699288	18699288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009958-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	97	432	0	ENST00000266497.5:c.3389G>A	p.Gly1130Glu	p.G1130E	ENST00000266497		1130	gGa/gAa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	34	453	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0009395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	82	575	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	14	236	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	177	345	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
MST1	4485	MSKCC	GRCh37	3	49722927	49722927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	39	228	0	ENST00000449682.2:c.1400C>T	p.Pro467Leu	p.P467L	ENST00000449682	NM_020998.3	467	cCg/cTg						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11307934	11307934	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	106	520	0	ENST00000361445.4:c.1058A>C	p.Lys353Thr	p.K353T	ENST00000361445	NM_004958.3	353	aAg/aCg						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25973019	25973019	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	71	464	0	ENST00000435504.4:c.1406T>A	p.Leu469His	p.L469H	ENST00000435504		469	cTc/cAc						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1271234	1271234	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0007138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	46	322	0	ENST00000310581.5:c.2468A>G	p.Lys823Arg	p.K823R	ENST00000310581	NM_198253.2	823	aAg/aGg						NEWRECORD																																																																									
ETV1	2115	MSKCC	GRCh37	7	13971181	13971181	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	83	386	0	ENST00000405192.2:c.748T>C	p.Phe250Leu	p.F250L	ENST00000405192	NM_001163147.1	250	Ttt/Ctt						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21557603	21557603	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	59	485	0	ENST00000382592.4:c.2242A>G	p.Ile748Val	p.I748V	ENST00000382592	NM_014572.2	748	Atc/Gtc						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857998	9857998	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	70	525	0	ENST00000330684.3:c.3403T>G	p.Phe1135Val	p.F1135V	ENST00000330684	NM_001134407.1	1135	Ttt/Gtt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577560	7577560	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	252	488	0	ENST00000269305.4:c.721T>A	p.Ser241Thr	p.S241T	ENST00000269305	NM_001126112.2	241	Tcc/Acc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40980892	40980892	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	40	339	0	ENST00000373198.4:c.1594A>G	p.Ser532Gly	p.S532G	ENST00000373198	NM_133170.3	532	Agt/Ggt						NEWRECORD																																																																									
HIST1H3J	8356	MSKCC	GRCh37	6	27858237	27858238	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0007138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1775	179	852	0	ENST00000359303.2:c.333_334delTG	p.Ala112TyrfsTer11	p.A112Yfs*11	ENST00000359303	NM_003535.2	111	tgTGct/tgct						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	211	527	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0006460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	43	255	1	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0006460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	166	696	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380277	25380277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	181	543	0	ENST00000256078.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	61	Caa/Aaa						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176678824	176678824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	195	712	0	ENST00000439151.2:c.4735G>A	p.Gly1579Arg	p.G1579R	ENST00000439151	NM_022455.4	1579	Gga/Aga						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31388640	31388640	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0006460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1075	204	607	2	ENST00000328111.2:c.1906-1G>T		p.X636_splice	ENST00000328111	NM_006892.3	636							NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0008134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	110	93	2	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac						NEWRECORD																																																																									
GPS2	2874	MSKCC	GRCh37	17	7216125	7216125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	314	458	0	ENST00000380728.2:c.934C>T	p.Arg312Trp	p.R312W	ENST00000380728		312	Cgg/Tgg						NEWRECORD																																																																									
H3F3B	3021	MSKCC	GRCh37	17	73775242	73775242	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1278	214	274	0	ENST00000254810.4:c.14A>T	p.Lys5Met	p.K5M	ENST00000254810	NM_005324.3	5	aAg/aTg						NEWRECORD																																																																									
DNAJB1	3337	MSKCC	GRCh37	19	14627760	14627760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	257	380	1	ENST00000254322.2:c.310G>A	p.Glu104Lys	p.E104K	ENST00000254322	NM_006145.1	104	Gag/Aag						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70339535	70339535	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0008134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1229	489	382	0	ENST00000374080.3:c.205-1G>C		p.X69_splice	ENST00000374080		69							NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0008978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	525	387	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0008978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	905	504	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0005277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	152	456	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
RAF1	5894	MSKCC	GRCh37	3	12641706	12641706	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	168	521	0	ENST00000251849.4:c.935T>A	p.Val312Glu	p.V312E	ENST00000251849	NM_002880.3	312	gTg/gAg						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47144879	47144879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	430	569	0	ENST00000409792.3:c.4874G>A	p.Arg1625His	p.R1625H	ENST00000409792	NM_014159.6	1625	cGt/cAt						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76909634	76909634	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	245	700	0	ENST00000373344.5:c.4271A>G	p.Lys1424Arg	p.K1424R	ENST00000373344	NM_000489.3	1424	aAa/aGa						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	94120459	94120459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009319-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1094	364	447	2	ENST00000369303.4:c.592G>T	p.Val198Phe	p.V198F	ENST00000369303	NM_004440.3	198	Gtc/Ttc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151842344	151842344	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009319-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	226	277	0	ENST00000262189.6:c.14068C>T	p.Arg4690Ter	p.R4690*	ENST00000262189	NM_170606.2	4690	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006516-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	29	332	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0006516-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	24	509	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	152	572	1	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89445035	89445035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	107	702	0	ENST00000336596.2:c.1355G>T	p.Ser452Ile	p.S452I	ENST00000336596	NM_005233.5	452	aGc/aTc						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47038792	47038792	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	132	581	0	ENST00000329236.7:c.568C>T	p.Gln190Ter	p.Q190*	ENST00000329236	NM_001204466.1	190	Cag/Tag						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243727107	243727107	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	146	593	0	ENST00000263826.5:c.863C>G	p.Thr288Arg	p.T288R	ENST00000263826	NM_005465.4	288	aCa/aGa						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47168137	47168137	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	80	632	1	ENST00000409792.3:c.87+1G>T		p.X29_splice	ENST00000409792	NM_014159.6	29							NEWRECORD																																																																									
FGFR3	2261	MSKCC	GRCh37	4	1801519	1801519	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	143	715	0	ENST00000260795.2:c.425A>T	p.Glu142Val	p.E142V	ENST00000260795		142	gAg/gTg						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131923688	131923688	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	247	671	0	ENST00000265335.6:c.958A>T	p.Arg320Trp	p.R320W	ENST00000265335		320	Agg/Tgg						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149514478	149514478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	86	722	0	ENST00000261799.4:c.466C>A	p.Leu156Met	p.L156M	ENST00000261799	NM_002609.3	156	Ctg/Atg						NEWRECORD																																																																									
IRF4	3662	MSKCC	GRCh37	6	401528	401528	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	156	635	1	ENST00000380956.4:c.850G>T	p.Ala284Ser	p.A284S	ENST00000380956	NM_001195286.1	284	Gcc/Tcc						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41729954	41729954	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	201	1008	2	ENST00000242208.4:c.575C>A	p.Ala192Asp	p.A192D	ENST00000242208	NM_002192.2	192	gCc/gAc						NEWRECORD																																																																									
MYC	4609	MSKCC	GRCh37	8	128751019	128751019	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1347	71	448	0	ENST00000377970.2:c.556T>A	p.Cys186Ser	p.C186S	ENST00000377970	NM_002467.4	186	Tgc/Agc						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49425124	49425124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	89	759	1	ENST00000301067.7:c.13364G>C	p.Arg4455Pro	p.R4455P	ENST00000301067	NM_003482.3	4455	cGc/cCc						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49432038	49432038	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	209	821	0	ENST00000301067.7:c.9101A>T	p.Asn3034Ile	p.N3034I	ENST00000301067	NM_003482.3	3034	aAt/aTt						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39922007	39922007	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	83	777	0	ENST00000378444.4:c.4165G>T	p.Asp1389Tyr	p.D1389Y	ENST00000378444	NM_001123385.1	1389	Gat/Tat						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53247099	53247099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	124	987	0	ENST00000375401.3:c.401G>T	p.Trp134Leu	p.W134L	ENST00000375401	NM_004187.3	134	tGg/tTg						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66931523	66931523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	88	649	0	ENST00000374690.3:c.2165C>T	p.Ala722Val	p.A722V	ENST00000374690	NM_000044.3	722	gCc/gTc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40877415	40877415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	164	611	2	ENST00000373198.4:c.2281del	p.Asp761ThrfsTer4	p.D761Tfs*4	ENST00000373198	NM_133170.3	761	Gac/ac						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1223099	1223109	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGCGGACGA	GGCGCGGACGA	-			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	162	769	0	ENST00000326873.7:c.1038_1048del	p.Ala347ArgfsTer9	p.A347Rfs*9	ENST00000326873	NM_000455.4	346	GGCGCGGACGAg/g						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1223078	1223092	+	inframe_deletion	In_Frame_Del	DEL	CCGTACTTGGAGGAC	CCGTACTTGGAGGAC	-			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	164	757	0	ENST00000326873.7:c.1016_1030del	p.Pro339_Asp343del	p.P339_D343del	ENST00000326873	NM_000455.4	339	CCGTACTTGGAGGAC/-						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	282	267	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0004710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	93	381	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508268	106508268	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs147631551		P-0004710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	32	188	0	ENST00000359195.3:c.262T>A	p.Tyr88Asn	p.Y88N	ENST00000359195	NM_002649.2	88	Tac/Aac						NEWRECORD																																																																									
NEGR1	257194	MSKCC	GRCh37	1	72748074	72748074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1180	102	535	0	ENST00000357731.5:c.104G>A	p.Gly35Glu	p.G35E	ENST00000357731	NM_173808.2	35	gGa/gAa						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156838360	156838360	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1041	61	449	0	ENST00000524377.1:c.638T>A	p.Leu213Gln	p.L213Q	ENST00000524377	NM_002529.3	213	cTg/cAg						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29451770	29451770	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	113	427	0	ENST00000389048.3:c.2795G>C	p.Gly932Ala	p.G932A	ENST00000389048	NM_004304.4	932	gGa/gCa						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52675969	52675969	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0004710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	108	457	0	ENST00000394830.3:c.1087+1G>T		p.X363_splice	ENST00000394830	NM_018313.4	363							NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56181767	56181767	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	54	224	0	ENST00000399503.3:c.3991G>T	p.Val1331Leu	p.V1331L	ENST00000399503	NM_005921.1	1331	Gtg/Ttg						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87635133	87635133	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	57	291	0	ENST00000277120.3:c.2185A>T	p.Thr729Ser	p.T729S	ENST00000277120		729	Aca/Tca						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32413590	32413590	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0004710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	62	259	0	ENST00000332351.3:c.1360A>T	p.Lys454Ter	p.K454*	ENST00000332351	NM_024426.4	454	Aaa/Taa						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100998393	100998393	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	19	105	0	ENST00000325455.5:c.1409C>A	p.Pro470His	p.P470H	ENST00000325455	NM_001202474.3	470	cCc/cAc						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	459905	459905	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1122	174	479	0	ENST00000399788.2:c.1190T>A	p.Leu397Gln	p.L397Q	ENST00000399788	NM_001042603.1	397	cTg/cAg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49425064	49425064	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1209	113	505	1	ENST00000301067.7:c.13424G>T	p.Ser4475Ile	p.S4475I	ENST00000301067	NM_003482.3	4475	aGc/aTc						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28597518	28597518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	134	418	0	ENST00000241453.7:c.2387C>A	p.Ala796Asp	p.A796D	ENST00000241453	NM_004119.2	796	gCc/gAc						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28622559	28622559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	65	249	0	ENST00000241453.7:c.1058C>A	p.Thr353Asn	p.T353N	ENST00000241453	NM_004119.2	353	aCc/aAc						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38060796	38060796	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1230	130	594	0	ENST00000250448.2:c.1193A>T	p.His398Leu	p.H398L	ENST00000250448	NM_004496.3	398	cAc/cTc						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88420351	88420351	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	25	156	0	ENST00000360948.2:c.2335G>T	p.Val779Phe	p.V779F	ENST00000360948	NM_001012338.2	779	Gtc/Ttc						NEWRECORD																																																																									
ERCC2	2068	MSKCC	GRCh37	19	45873464	45873464	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	76	367	0	ENST00000391945.4:c.32A>G	p.Tyr11Cys	p.Y11C	ENST00000391945	NM_000400.3	11	tAc/tGc						NEWRECORD																																																																									
SRC	6714	MSKCC	GRCh37	20	36024605	36024605	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	55	445	0	ENST00000358208.4:c.594G>T	p.Lys198Asn	p.K198N	ENST00000358208		198	aaG/aaT						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40944436	40944436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1140	118	486	0	ENST00000373198.4:c.2066G>A	p.Gly689Asp	p.G689D	ENST00000373198	NM_133170.3	689	gGc/gAc						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41525923	41525923	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	112	348	0	ENST00000263253.7:c.1198A>T	p.Ile400Phe	p.I400F	ENST00000263253	NM_001429.3	400	Att/Ttt						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53228252	53228252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1191	77	540	0	ENST00000375401.3:c.2150C>T	p.Ser717Leu	p.S717L	ENST00000375401	NM_004187.3	717	tCa/tTa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	343	507	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	402	528	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0006657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	285	614	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66361214	66361214	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375878596		P-0006657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	50	493	0	ENST00000273854.3:c.958G>A	p.Gly320Ser	p.G320S	ENST00000273854	NM_004439.5	320	Ggc/Agc						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135801101	135801101	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	192	472	0	ENST00000298552.3:c.236A>G	p.Tyr79Cys	p.Y79C	ENST00000298552	NM_001162426.1	79	tAt/tGt						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9858370	9858370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	68	453	0	ENST00000330684.3:c.3031C>T	p.Arg1011Trp	p.R1011W	ENST00000330684	NM_001134407.1	1011	Cgg/Tgg						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008667-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	89	549	0	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57864850	57864850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008667-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1080	65	723	1	ENST00000228682.2:c.2327C>T	p.Thr776Ile	p.T776I	ENST00000228682	NM_005269.2	776	aCc/aTc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	164	471	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1218500	1218500	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0006993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	144	463	0	ENST00000326873.7:c.374+1A>G		p.X125_splice	ENST00000326873	NM_000455.4	125							NEWRECORD																																																																									
GATA2	2624	MSKCC	GRCh37	3	128205032	128205032	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113166293		P-0006993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	107	459	2	ENST00000341105.2:c.409C>T	p.Pro137Ser	p.P137S	ENST00000341105	NM_032638.4	137	Cca/Tca						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602563	10602563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	26	448	0	ENST00000171111.5:c.1015C>T	p.Leu339Phe	p.L339F	ENST00000171111	NM_203500.1	339	Ctc/Ttc						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610136	10610136	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	57	605	0	ENST00000171111.5:c.574G>T	p.Glu192Ter	p.E192*	ENST00000171111	NM_203500.1	192	Gag/Tag						NEWRECORD																																																																									
EIF1AX	1964	MSKCC	GRCh37	X	20156715	20156715	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	173	258	0	ENST00000379607.5:c.42G>T	p.Arg14Ser	p.R14S	ENST00000379607	NM_001412.3	14	agG/agT						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47045497	47045497	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0006993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	151	318	0	ENST00000329236.7:c.2230A>T	p.Arg744Ter	p.R744*	ENST00000329236	NM_001204466.1	744	Aga/Tga						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72832404	72832404	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	195	715	1	ENST00000268489.5:c.4177del	p.Val1393CysfsTer32	p.V1393Cfs*32	ENST00000268489	NM_006885.3	1393	Gtg/tg						NEWRECORD																																																																									
VHL	7428	MSKCC	GRCh37	3	10183750	10183750	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	59	571	0	ENST00000256474.2:c.219G>C	p.Gln73His	p.Q73H	ENST00000256474	NM_000551.3	73	caG/caC						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2979533	2979533	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	40	507	0	ENST00000396946.4:c.714G>C	p.Lys238Asn	p.K238N	ENST00000396946	NM_032415.4	238	aaG/aaC						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	116	447	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	111	401	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	44	386	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	92	488	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47039610	47039610	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			43	17	142	0	ENST00000329236.7:c.829-1G>A		p.X277_splice	ENST00000329236	NM_001204466.1	277							NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27100845	27100845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	44	487	0	ENST00000324856.7:c.4127C>T	p.Thr1376Ile	p.T1376I	ENST00000324856	NM_006015.4	1376	aCa/aTa						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143081511	143081511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	14	316	0	ENST00000262992.4:c.1563G>T	p.Trp521Cys	p.W521C	ENST00000262992	NM_001101669.1	521	tgG/tgT						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117677879	117677879	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	51	519	1	ENST00000368508.3:c.4054A>T	p.Ile1352Leu	p.I1352L	ENST00000368508	NM_002944.2	1352	Ata/Tta						NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	162622184	162622184	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	15	370	0	ENST00000366898.1:c.513G>T	p.Gln171His	p.Q171H	ENST00000366898	NM_004562.2	171	caG/caT						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8518344	8518344	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	79	252	0	ENST00000356435.5:c.1047G>T	p.Glu349Asp	p.E349D	ENST00000356435		349	gaG/gaT						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118390479	118390479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	62	396	0	ENST00000534358.1:c.11293G>T	p.Gly3765Cys	p.G3765C	ENST00000534358	NM_005933.3	3765	Ggc/Tgc						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115112138	115112138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	16	529	0	ENST00000257566.3:c.1602G>T	p.Met534Ile	p.M534I	ENST00000257566	NM_016569.3	534	atG/atT						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	10274126	10274126	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	14	369	0	ENST00000330684.3:c.143A>T	p.Glu48Val	p.E48V	ENST00000330684	NM_001134407.1	48	gAg/gTg						NEWRECORD																																																																									
TCF3	6929	MSKCC	GRCh37	19	1627372	1627372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	50	517	0	ENST00000344749.5:c.352G>T	p.Gly118Cys	p.G118C	ENST00000344749	NM_001136139.2	118	Ggc/Tgc						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15296102	15296102	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	57	524	0	ENST00000263388.2:c.2262G>T	p.Met754Ile	p.M754I	ENST00000263388	NM_000435.2	754	atG/atT						NEWRECORD																																																																									
TRAF7	84231	MSKCC	GRCh37	16	2222282	2222283	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	63	442	1	ENST00000326181.6:c.566_567delinsTT	p.Arg189Leu	p.R189L	ENST00000326181	NM_032271.2	189	cGG/cTT						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0009680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	69	353	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221956	1221956	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	68	579	1	ENST00000326873.7:c.871G>T	p.Glu291Ter	p.E291*	ENST00000326873	NM_000455.4	291	Gag/Tag						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32178572	32178572	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	65	458	2	ENST00000375023.3:c.2822A>C	p.Asn941Thr	p.N941T	ENST00000375023	NM_004557.3	941	aAc/aCc						NEWRECORD																																																																									
ETV6	2120	MSKCC	GRCh37	12	12022806	12022806	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	20	278	0	ENST00000396373.4:c.912C>G	p.Ile304Met	p.I304M	ENST00000396373	NM_001987.4	304	atC/atG						NEWRECORD																																																																									
H3F3C	440093	MSKCC	GRCh37	12	31944785	31944785	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	26	361	0	ENST00000340398.3:c.316G>C	p.Asp106His	p.D106H	ENST00000340398	NM_001013699.2	106	Gat/Cat						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59885848	59885848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	68	454	1	ENST00000259008.2:c.898G>A	p.Glu300Lys	p.E300K	ENST00000259008	NM_032043.2	300	Gaa/Aaa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	149	514	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753660142		P-0004940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	113	601	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52436320	52436327	+	frameshift_variant	Frame_Shift_Del	DEL	TTGTAGGG	TTGTAGGG	-			P-0004940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	199	560	0	ENST00000460680.1:c.2167_2174del	p.Pro723GlyfsTer38	p.P723Gfs*38	ENST00000460680	NM_004656.3	723	CCCTACAAg/g						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	267	269	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0006887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	276	365	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	595	468	0	ENST00000269305.4:c.568C>A	p.Pro190Thr	p.P190T	ENST00000269305	NM_001126112.2	190	Cct/Act						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212530163	212530163	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	53	467	0	ENST00000342788.4:c.1756G>T	p.Gly586Cys	p.G586C	ENST00000342788	NM_005235.2	586	Ggc/Tgc						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142184010	142184010	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1212	177	559	0	ENST00000350721.4:c.6970A>G	p.Met2324Val	p.M2324V	ENST00000350721	NM_001184.3	2324	Atg/Gtg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128142	112128142	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	135	363	0	ENST00000257430.4:c.646-1G>A		p.X216_splice	ENST00000257430	NM_000038.5	216							NEWRECORD																																																																									
TSHR	7253	MSKCC	GRCh37	14	81609366	81609366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	277	685	1	ENST00000298171.2:c.964C>A	p.Leu322Ile	p.L322I	ENST00000298171	NM_000369.2	322	Ctc/Atc						NEWRECORD																																																																									
RARA	5914	MSKCC	GRCh37	17	38510563	38510563	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1578	87	382	0	ENST00000254066.5:c.817A>T	p.Ile273Phe	p.I273F	ENST00000254066	NM_000964.3	273	Atc/Ttc						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10265378	10265378	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	82	374	0	ENST00000340748.4:c.1668T>G	p.Phe556Leu	p.F556L	ENST00000340748		556	ttT/ttG						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44929570	44929570	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0008010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	122	342	0	ENST00000377967.4:c.2670C>G	p.Tyr890Ter	p.Y890*	ENST00000377967	NM_021140.2	890	taC/taG						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	143	280	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149459760	149459760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	106	424	1	ENST00000286301.3:c.447G>A	p.Met149Ile	p.M149I	ENST00000286301	NM_005211.3	149	atG/atA						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42035298	42035298	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1120	111	644	0	ENST00000219905.7:c.5140A>G	p.Thr1714Ala	p.T1714A	ENST00000219905	NM_001164273.1	1714	Act/Gct						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0009842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	109	608	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15366932	15366932	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	92	986	0	ENST00000263377.2:c.1694C>G	p.Ala565Gly	p.A565G	ENST00000263377	NM_058243.2	565	gCc/gGc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27087360	27087360	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	63	463	0	ENST00000324856.7:c.1934C>G	p.Ser645Ter	p.S645*	ENST00000324856	NM_006015.4	645	tCa/tGa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	21	246	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157528026	157528026	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	39	221	0	ENST00000346085.5:c.5751G>C	p.Lys1917Asn	p.K1917N	ENST00000346085	NM_020732.3	1917	aaG/aaC						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67482816	67482816	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	54	491	0	ENST00000327367.4:c.1220T>C	p.Leu407Pro	p.L407P	ENST00000327367	NM_005902.3	407	cTt/cCt						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15291576	15291576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	59	517	0	ENST00000263388.2:c.3058G>A	p.Ala1020Thr	p.A1020T	ENST00000263388	NM_000435.2	1020	Gcc/Acc						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108214065	108214074	+	frameshift_variant	Frame_Shift_Del	DEL	TTTCAGTGCC	TTTCAGTGCC	-	rs71855130		P-0009842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	54	430	0	ENST00000278616.4:c.8395_8404delTTTCAGTGCC	p.Phe2799LysfsTer4	p.F2799Kfs*4	ENST00000278616	NM_000051.3	2795	gaTTTCAGTGCC/ga						NEWRECORD																																																																									
KLF4	9314	MSKCC	GRCh37	9	110248099	110248099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	120	465	0	ENST00000374672.4:c.1373G>T	p.Cys458Phe	p.C458F	ENST00000374672	NM_004235.4	458	tGc/tTc						NEWRECORD																																																																									
KLF4	9314	MSKCC	GRCh37	9	110248103	110248103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	123	463	0	ENST00000374672.4:c.1369C>G	p.Gln457Glu	p.Q457E	ENST00000374672	NM_004235.4	457	Cag/Gag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0007342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	105	347	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152382220	152382220	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	44	412	1	ENST00000206249.3:c.1330G>T	p.Glu444Ter	p.E444*	ENST00000206249	NM_000125.3	444	Gag/Tag						NEWRECORD																																																																									
KLF4	9314	MSKCC	GRCh37	9	110249896	110249896	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	24	164	2	ENST00000374672.4:c.779C>A	p.Pro260Gln	p.P260Q	ENST00000374672	NM_004235.4	260	cCg/cAg						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118367047	118367047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	138	440	0	ENST00000534358.1:c.5629G>A	p.Ala1877Thr	p.A1877T	ENST00000534358	NM_005933.3	1877	Gcg/Acg						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57859626	57859626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	93	612	2	ENST00000228682.2:c.680G>A	p.Arg227His	p.R227H	ENST00000228682	NM_005269.2	227	cGt/cAt						NEWRECORD																																																																									
ERCC2	2068	MSKCC	GRCh37	19	45860787	45860787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	65	385	0	ENST00000391945.4:c.1322C>T	p.Ser441Leu	p.S441L	ENST00000391945	NM_000400.3	441	tCg/tTg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	281	419	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0008765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	197	228	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0008765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	735	541	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134920484	134920484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	313	487	1	ENST00000398015.3:c.2299C>T	p.Arg767Cys	p.R767C	ENST00000398015	NM_004441.4	767	Cgc/Tgc						NEWRECORD																																																																									
FAM175A	84142	MSKCC	GRCh37	4	84391423	84391423	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	208	353	0	ENST00000321945.7:c.409C>G	p.Pro137Ala	p.P137A	ENST00000321945	NM_139076.2	137	Cca/Gca						NEWRECORD																																																																									
STAT3	6774	MSKCC	GRCh37	17	40491348	40491348	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	353	638	1	ENST00000264657.5:c.452T>A	p.Val151Asp	p.V151D	ENST00000264657	NM_139276.2	151	gTc/gAc						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128829081	128829081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	11	25	0	ENST00000249373.3:c.89C>T	p.Ala30Val	p.A30V	ENST00000249373	NM_005631.4	30	gCg/gTg						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23652445	23652445	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	181	422	0	ENST00000261584.4:c.34G>T	p.Glu12Ter	p.E12*	ENST00000261584	NM_024675.3	12	Gag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0009122-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	154	259	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225							NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	11999013	11999013	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0009122-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	185	305	0	ENST00000353533.5:c.513+2T>C		p.X171_splice	ENST00000353533	NM_003010.3	171							NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142172040	142172040	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009122-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	343	461	0	ENST00000350721.4:c.7691A>G	p.Glu2564Gly	p.E2564G	ENST00000350721	NM_001184.3	2564	gAa/gGa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952141	178952141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	90	285	0	ENST00000263967.3:c.3196G>A	p.Ala1066Thr	p.A1066T	ENST00000263967	NM_006218.2	1066	Gca/Aca						NEWRECORD																																																																									
NPM1	4869	MSKCC	GRCh37	5	170827901	170827901	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	152	396	0	ENST00000296930.5:c.641C>G	p.Ser214Ter	p.S214*	ENST00000296930	NM_002520.6	214	tCa/tGa						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207203	1207203	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1131690950		P-0005170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	150	201	0	ENST00000326873.7:c.290+1G>A		p.X97_splice	ENST00000326873	NM_000455.4	97							NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600474	10600474	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	185	329	0	ENST00000171111.5:c.1381A>T	p.Ile461Phe	p.I461F	ENST00000171111	NM_203500.1	461	Atc/Ttc						NEWRECORD																																																																									
NF2	4771	MSKCC	GRCh37	22	30038275	30038275	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0007794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	348	380	0	ENST00000338641.4:c.447+1G>A		p.X149_splice	ENST00000338641	NM_000268.3	149							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579356	7579366	+	frameshift_variant	Frame_Shift_Del	DEL	GACGGAAACCG	GACGGAAACCG	-			P-0007794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	330	343	0	ENST00000269305.4:c.321_331del	p.Phe109LeufsTer36	p.F109Lfs*36	ENST00000269305	NM_001126112.2	107	taCGGTTTCCGTCtg/tatg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	176	202	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173830	112173830	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	193	245	0	ENST00000257430.4:c.2539G>T	p.Glu847Ter	p.E847*	ENST00000257430	NM_000038.5	847	Gaa/Taa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786204041		P-0009433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	239	265	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg						NEWRECORD																																																																									
NKX3-1	4824	MSKCC	GRCh37	8	23539105	23539105	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	110	304	0	ENST00000380871.4:c.334G>T	p.Ala112Ser	p.A112S	ENST00000380871	NM_006167.3	112	Gcc/Tcc						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89347080	89347080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	249	259	2	ENST00000301030.4:c.5870C>T	p.Ala1957Val	p.A1957V	ENST00000301030	NM_001256183.1	1957	gCg/gTg						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63410127	63410127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	187	283	0	ENST00000330258.3:c.3040G>C	p.Gly1014Arg	p.G1014R	ENST00000330258	NM_152424.3	1014	Ggg/Cgg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	56	422	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	39	329	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	114	620	0	ENST00000269305.4:c.451C>G	p.Pro151Ala	p.P151A	ENST00000269305	NM_001126112.2	151	Ccc/Gcc						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152129241	152129241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	64	609	0	ENST00000206249.3:c.194C>T	p.Ala65Val	p.A65V	ENST00000206249	NM_000125.3	65	gCg/gTg						NEWRECORD																																																																									
CDKN2B	1030	MSKCC	GRCh37	9	22006194	22006194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	65	503	2	ENST00000276925.6:c.209C>T	p.Ala70Val	p.A70V	ENST00000276925	NM_004936.3	70	gCg/gTg						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63412569	63412569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			53	81	318	0	ENST00000330258.3:c.598G>A	p.Val200Ile	p.V200I	ENST00000330258	NM_152424.3	200	Gtc/Atc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	146	231	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	107	171	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
PIK3R2	5296	MSKCC	GRCh37	19	18277007	18277007	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs146156161		P-0009203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	169	292	0	ENST00000222254.8:c.1454A>G	p.Asn485Ser	p.N485S	ENST00000222254	NM_005027.3	485	aAt/aGt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	80	247	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0009352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	197	472	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100999243	100999243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	155	633	0	ENST00000325455.5:c.559C>T	p.Arg187Trp	p.R187W	ENST00000325455	NM_001202474.3	187	Cgg/Tgg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0006533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	328	179	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	51	285	1	ENST00000269305.4:c.537T>A	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caA						NEWRECORD																																																																									
NBN	4683	MSKCC	GRCh37	8	90976728	90976728	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	44	319	0	ENST00000265433.3:c.904C>G	p.Leu302Val	p.L302V	ENST00000265433	NM_002485.4	302	Ctt/Gtt						NEWRECORD																																																																									
HRAS	3265	MSKCC	GRCh37	11	533552	533552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	24	468	0	ENST00000311189.7:c.351G>T	p.Lys117Asn	p.K117N	ENST00000311189		117	aaG/aaT						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115120692	115120692	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	124	463	1	ENST00000257566.3:c.314T>A	p.Val105Glu	p.V105E	ENST00000257566	NM_016569.3	105	gTg/gAg						NEWRECORD																																																																									
NCOA3	8202	MSKCC	GRCh37	20	46264821	46264821	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	72	643	0	ENST00000371998.3:c.1691A>G	p.Asn564Ser	p.N564S	ENST00000371998		564	aAt/aGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0005502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	804	801	3	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36939103	36939103	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1562	566	1047	1	ENST00000361632.4:c.606G>A	p.Trp202Ter	p.W202*	ENST00000361632		202	tgG/tgA						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117718114	117718114	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	296	522	0	ENST00000368508.3:c.743T>A	p.Phe248Tyr	p.F248Y	ENST00000368508	NM_002944.2	248	tTc/tAc						NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14024570	14024570	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	150	354	0	ENST00000311895.7:c.796A>G	p.Ile266Val	p.I266V	ENST00000311895	NM_005236.2	266	Atc/Gtc						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12044474	12044474	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	350	398	0	ENST00000353533.5:c.1097T>C	p.Phe366Ser	p.F366S	ENST00000353533	NM_003010.3	366	tTt/tCt						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0009016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	110	311	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	29	378	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0009016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	34	438	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175852	112175852	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	84	371	1	ENST00000257430.4:c.4561G>T	p.Glu1521Ter	p.E1521*	ENST00000257430	NM_000038.5	1521	Gaa/Taa						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55371722	55371722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	74	298	0	ENST00000297316.4:c.412C>T	p.Arg138Trp	p.R138W	ENST00000297316	NM_022454.3	138	Cgg/Tgg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	191	438	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47045718	47045718	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	175	246	0	ENST00000329236.7:c.2365C>T	p.Gln789Ter	p.Q789*	ENST00000329236	NM_001204466.1	789	Cag/Tag						NEWRECORD																																																																									
FUBP1	8880	MSKCC	GRCh37	1	78428527	78428527	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	37	470	0	ENST00000370768.2:c.1272G>C	p.Met424Ile	p.M424I	ENST00000370768	NM_003902.3	424	atG/atC						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156851274	156851274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	59	444	0	ENST00000524377.1:c.2231G>A	p.Arg744His	p.R744H	ENST00000524377	NM_002529.3	744	cGt/cAt						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25991706	25991706	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	66	380	0	ENST00000435504.4:c.536A>G	p.Gln179Arg	p.Q179R	ENST00000435504		179	cAg/cGg						NEWRECORD																																																																									
MSH2	4436	MSKCC	GRCh37	2	47702410	47702410	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	85	186	0	ENST00000233146.2:c.2005+1G>T		p.X669_splice	ENST00000233146	NM_000251.2	669							NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89521670	89521670	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	45	495	1	ENST00000336596.2:c.2747C>A	p.Thr916Lys	p.T916K	ENST00000336596	NM_005233.5	916	aCa/aAa						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131895051	131895051	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	88	254	0	ENST00000265335.6:c.205G>T	p.Asp69Tyr	p.D69Y	ENST00000265335		69	Gat/Tat						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30670945	30670945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	148	511	1	ENST00000376406.3:c.5801C>T	p.Thr1934Ile	p.T1934I	ENST00000376406	NM_014641.2	1934	aCa/aTa						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106509340	106509340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	52	484	1	ENST00000359195.3:c.1334C>A	p.Ala445Asp	p.A445D	ENST00000359195	NM_002649.2	445	gCc/gAc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8507340	8507340	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	25	536	0	ENST00000356435.5:c.1638C>A	p.Asn546Lys	p.N546K	ENST00000356435		546	aaC/aaA						NEWRECORD																																																																									
KLF4	9314	MSKCC	GRCh37	9	110250173	110250173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	57	282	0	ENST00000374672.4:c.502G>T	p.Gly168Cys	p.G168C	ENST00000374672	NM_004235.4	168	Ggc/Tgc						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49425496	49425496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	38	701	1	ENST00000301067.7:c.12992C>T	p.Pro4331Leu	p.P4331L	ENST00000301067	NM_003482.3	4331	cCc/cTc						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39647351	39647351	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	74	507	1	ENST00000262039.4:c.2524-1G>T		p.X842_splice	ENST00000262039	NM_002647.2	842							NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11144114	11144114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	38	491	1	ENST00000358026.2:c.3695G>A	p.Gly1232Asp	p.G1232D	ENST00000358026	NM_001128849.1	1232	gGc/gAc						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15285135	15285135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	156	432	0	ENST00000263388.2:c.4480G>T	p.Gly1494Cys	p.G1494C	ENST00000263388	NM_000435.2	1494	Ggc/Tgc						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47044587	47044587	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	35	220	0	ENST00000329236.7:c.1850C>G	p.Ala617Gly	p.A617G	ENST00000329236	NM_001204466.1	617	gCc/gGc						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70345913	70345913	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	35	259	0	ENST00000374080.3:c.2450G>T	p.Arg817Leu	p.R817L	ENST00000374080		817	cGc/cTc						NEWRECORD																																																																									
MYCN	4613	MSKCC	GRCh37	2	16082361	16082361	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	29	413	0	ENST00000281043.3:c.179del	p.Pro60ArgfsTer71	p.P60Rfs*71	ENST00000281043	NM_005378.4	59	Ccc/cc						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	82	325	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	101	300	0	ENST00000269305.4:c.542G>C	p.Arg181Pro	p.R181P	ENST00000269305	NM_001126112.2	181	cGc/cCc						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142184042	142184042	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	107	323	0	ENST00000350721.4:c.6938C>G	p.Ser2313Cys	p.S2313C	ENST00000350721	NM_001184.3	2313	tCt/tGt						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55129934	55129934	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	126	509	0	ENST00000257290.5:c.468G>C	p.Glu156Asp	p.E156D	ENST00000257290	NM_006206.4	156	gaG/gaC						NEWRECORD																																																																									
HLA-A	3105	MSKCC	GRCh37	6	29911155	29911155	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	75	229	0	ENST00000376809.5:c.454G>T	p.Glu152Ter	p.E152*	ENST00000376809	NM_002116.7	152	Gag/Tag						NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	162864461	162864461	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	61	463	0	ENST00000366898.1:c.52G>C	p.Asp18His	p.D18H	ENST00000366898	NM_004562.2	18	Gat/Cat						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66217274	66217274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	70	341	0	ENST00000273854.3:c.2341C>A	p.Leu781Met	p.L781M	ENST00000273854	NM_004439.5	781	Ctg/Atg						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10599904	10599904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	401	472	0	ENST00000171111.5:c.1672G>A	p.Gly558Arg	p.G558R	ENST00000171111	NM_203500.1	558	Ggg/Agg						NEWRECORD																																																																									
ARAF	369	MSKCC	GRCh37	X	47422367	47422367	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0006950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	360	484	0	ENST00000377045.4:c.1A>G	p.Met1?	p.M1?	ENST00000377045	NM_001654.4	1	Atg/Gtg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	95	394	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
RFWD2	64326	MSKCC	GRCh37	1	176145125	176145125	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	81	408	0	ENST00000367669.3:c.486G>C	p.Gln162His	p.Q162H	ENST00000367669	NM_022457.5	162	caG/caC						NEWRECORD																																																																									
FGFR4	2264	MSKCC	GRCh37	5	176523100	176523100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	150	386	0	ENST00000292408.4:c.1864G>C	p.Glu622Gln	p.E622Q	ENST00000292408	NM_213647.1	622	Gag/Cag						NEWRECORD																																																																									
TRAF7	84231	MSKCC	GRCh37	16	2215902	2215902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1877	208	597	0	ENST00000326181.6:c.104G>A	p.Gly35Glu	p.G35E	ENST00000326181	NM_032271.2	35	gGa/gAa						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68845585	68845585	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0009966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	161	298	0	ENST00000261769.5:c.833-2A>T		p.X278_splice	ENST00000261769	NM_004360.3	278							NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0006844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	286	316	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5221123	5221123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	81	348	1	ENST00000357368.4:c.3343G>A	p.Ala1115Thr	p.A1115T	ENST00000357368	NM_002850.3	1115	Gcc/Acc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576863	7576863	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	148	320	0	ENST00000269305.4:c.983del	p.Phe328SerfsTer17	p.F328Sfs*17	ENST00000269305	NM_001126112.2	328	tTc/tc						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128850272	128850272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	178	416	1	ENST00000249373.3:c.1535G>T	p.Arg512Leu	p.R512L	ENST00000249373	NM_005631.4	512	cGc/cTc						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29687512	29687512	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	60	286	0	ENST00000358273.4:c.8168A>G	p.Gln2723Arg	p.Q2723R	ENST00000358273	NM_001042492.2	2723	cAa/cGa						NEWRECORD																																																																									
CRKL	1399	MSKCC	GRCh37	22	21304092	21304092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	150	404	0	ENST00000354336.3:c.871G>A	p.Val291Ile	p.V291I	ENST00000354336	NM_005207.3	291	Gtc/Atc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	426	339	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40980849	40980849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	93	367	0	ENST00000373198.4:c.1637G>A	p.Arg546Gln	p.R546Q	ENST00000373198	NM_133170.3	546	cGg/cAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578507	7578507	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	215	359	1	ENST00000269305.4:c.423C>A	p.Cys141Ter	p.C141*	ENST00000269305	NM_001126112.2	141	tgC/tgA						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974899	+	coding_sequence_variant,5_prime_UTR_variant	In_Frame_Del	DEL	GCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCT	GCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCT	-			P-0006371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	122	126	0	ENST00000304494.5:c.-73_50delAGGGTGGGGCGGACCGCGTGCGCTCGGCGGCTGCGGAGAGGGGGAGAGCAGGCAGCGGGCGGCGGGGAGCAGCATGGAGCCGGCGGCGGGGAGCAGCATGGAGCCTTCGGCTGACTGGCTGGC		p.*25*	ENST00000304494	NM_000077.4	25							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	19	430	0	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18499619	18499619	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	42	718	1	ENST00000266497.5:c.1474C>T	p.Gln492Ter	p.Q492*	ENST00000266497		492	Cag/Tag						NEWRECORD																																																																									
MLH1	4292	MSKCC	GRCh37	3	37067452	37067452	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	53	476	0	ENST00000231790.2:c.1363A>G	p.Thr455Ala	p.T455A	ENST00000231790	NM_000249.3	455	Act/Gct						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	294	113	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	24	138	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108199854	108199854	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	27	157	0	ENST00000278616.4:c.7196A>G	p.Gln2399Arg	p.Q2399R	ENST00000278616	NM_000051.3	2399	cAa/cGa						NEWRECORD																																																																									
TNFRSF14	8764	MSKCC	GRCh37	1	2491400	2491400	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	17	178	0	ENST00000355716.4:c.443A>G	p.Gln148Arg	p.Q148R	ENST00000355716	NM_003820.2	148	cAg/cGg						NEWRECORD																																																																									
INHA	3623	MSKCC	GRCh37	2	220439907	220439907	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	48	290	0	ENST00000243786.2:c.760G>T	p.Glu254Ter	p.E254*	ENST00000243786	NM_002191.3	254	Gag/Tag						NEWRECORD																																																																									
PDCD1	5133	MSKCC	GRCh37	2	242794961	242794961	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	21	261	0	ENST00000334409.5:c.248C>A	p.Pro83His	p.P83H	ENST00000334409	NM_005018.2	83	cCc/cAc						NEWRECORD																																																																									
GSK3B	2932	MSKCC	GRCh37	3	119631585	119631585	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	21	188	0	ENST00000316626.5:c.681G>T	p.Leu227Phe	p.L227F	ENST00000316626		227	ttG/ttT						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55240682	55240682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	35	180	0	ENST00000275493.2:c.1926G>T	p.Lys642Asn	p.K642N	ENST00000275493	NM_005228.3	642	aaG/aaT						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81358975	81358975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	26	184	0	ENST00000222390.5:c.986G>T	p.Trp329Leu	p.W329L	ENST00000222390	NM_000601.4	329	tGg/tTg						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89825095	89825095	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	32	216	0	ENST00000389301.3:c.2871G>T	p.Trp957Cys	p.W957C	ENST00000389301	NM_000135.2	957	tgG/tgT						NEWRECORD																																																																									
STAT5B	6777	MSKCC	GRCh37	17	40354789	40354789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	38	236	0	ENST00000293328.3:c.2115G>T	p.Lys705Asn	p.K705N	ENST00000293328	NM_012448.3	705	aaG/aaT						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36253011	36253011	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	17	100	0	ENST00000300305.3:c.352-1G>T		p.X118_splice	ENST00000300305		118							NEWRECORD																																																																									
ICOSLG	23308	MSKCC	GRCh37	21	45655257	45655257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	13	153	0	ENST00000407780.3:c.595G>T	p.Val199Leu	p.V199L	ENST00000407780	NM_001283052.1	199	Gtg/Ttg						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53239902	53239902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	47	267	0	ENST00000375401.3:c.1539G>T	p.Trp513Cys	p.W513C	ENST00000375401	NM_004187.3	513	tgG/tgT						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	142	258	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151921520	151921520	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0007074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	14	56	0	ENST00000262189.6:c.3158G>T	p.Trp1053Leu	p.W1053L	ENST00000262189	NM_170606.2	1053	tGg/tTg						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32954150	32954150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	120	228	0	ENST00000380152.3:c.9124G>A	p.Asp3042Asn	p.D3042N	ENST00000380152		3042	Gat/Aat						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602337	10602337	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	148	394	0	ENST00000171111.5:c.1241A>T	p.Asn414Ile	p.N414I	ENST00000171111	NM_203500.1	414	aAc/aTc						NEWRECORD																																																																									
PAX5	5079	MSKCC	GRCh37	9	36966645	36966645	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	90	306	0	ENST00000358127.4:c.681del	p.Leu228CysfsTer50	p.L228Cfs*50	ENST00000358127	NM_001280556.1	227	gaC/ga						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220643	1220662	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCCGAGATTGCCAACGG	CCGCCCGAGATTGCCAACGG	GCGC			P-0007074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	87	329	0	ENST00000326873.7:c.661_680delinsGCGC	p.Pro221AlafsTer61	p.P221Afs*61	ENST00000326873	NM_000455.4	221	CCGCCCGAGATTGCCAACGGc/GCGCc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0007180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	347	508	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	125	240	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0007180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	159	452	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	284	344	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	69	510	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0005275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	54	628	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974770	21974775	+	inframe_deletion	In_Frame_Del	DEL	GGCCGT	GGCCGT	-			P-0005275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	23	290	0	ENST00000304494.5:c.52_57delACGGCC	p.Thr18_Ala19del	p.T18_A19del	ENST00000304494	NM_000077.4	18	ACGGCC/-						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175630	112175630	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	220	663	1	ENST00000257430.4:c.4339C>T	p.Gln1447Ter	p.Q1447*	ENST00000257430	NM_000038.5	1447	Caa/Taa						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696438	47696438	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	245	558	0	ENST00000347630.2:c.385A>G	p.Lys129Glu	p.K129E	ENST00000347630	NM_001007230.1	129	Aaa/Gaa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151853028	151853028	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	161	238	0	ENST00000262189.6:c.11927del	p.Pro3976GlnfsTer11	p.P3976Qfs*11	ENST00000262189	NM_170606.2	3976	cCa/ca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0005446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	592	715	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11319373	11319373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	200	556	0	ENST00000361445.4:c.94C>T	p.Arg32Trp	p.R32W	ENST00000361445	NM_004958.3	32	Cgg/Tgg						NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48025849	48025849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	279	785	0	ENST00000234420.5:c.727C>T	p.Arg243Cys	p.R243C	ENST00000234420	NM_000179.2	243	Cgc/Tgc						NEWRECORD																																																																									
PHOX2B	8929	MSKCC	GRCh37	4	41749491	41749491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	135	450	0	ENST00000226382.2:c.304C>T	p.Arg102Cys	p.R102C	ENST00000226382	NM_003924.3	102	Cgc/Tgc						NEWRECORD																																																																									
CDK4	1019	MSKCC	GRCh37	12	58143236	58143236	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0005446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	394	482	0	ENST00000257904.6:c.683+1G>C		p.X228_splice	ENST00000257904	NM_000075.3	228							NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2108875	2108875	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0005446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	204	514	0	ENST00000219476.3:c.975+1G>T		p.X325_splice	ENST00000219476	NM_000548.3	325							NEWRECORD																																																																									
GSK3B	2932	MSKCC	GRCh37	3	119666195	119666195	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	137	238	0	ENST00000316626.5:c.286C>G	p.Arg96Gly	p.R96G	ENST00000316626		96	Cga/Gga						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67589630	67589630	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	323	338	0	ENST00000274335.5:c.1393A>T	p.Arg465Ter	p.R465*	ENST00000274335		465	Aga/Tga						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32188392	32188392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	185	266	0	ENST00000375023.3:c.949G>T	p.Glu317Ter	p.E317*	ENST00000375023	NM_004557.3	317	Gag/Tag						NEWRECORD																																																																									
PIM1	5292	MSKCC	GRCh37	6	37139008	37139008	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	269	283	0	ENST00000373509.5:c.348C>A	p.Phe116Leu	p.F116L	ENST00000373509	NM_002648.3	116	ttC/ttA						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117710892	117710892	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1448	240	385	0	ENST00000368508.3:c.1380C>G	p.Ile460Met	p.I460M	ENST00000368508	NM_002944.2	460	atC/atG						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116371758	116371758	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201980687		P-0009021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1248	241	331	0	ENST00000397752.3:c.1237C>A	p.Arg413Ser	p.R413S	ENST00000397752	NM_000245.2	413	Cgt/Agt						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46211452	46211452	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0009021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	145	290	0	ENST00000334344.6:c.419-1G>C		p.X140_splice	ENST00000334344	NM_152641.2	140							NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42003303	42003303	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1259	414	600	0	ENST00000219905.7:c.2840C>G	p.Ser947Ter	p.S947*	ENST00000219905	NM_001164273.1	947	tCa/tGa						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70361137	70361137	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	267	309	1	ENST00000374080.3:c.6325C>T	p.Gln2109Ter	p.Q2109*	ENST00000374080		2109	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577152	7577152	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	596	427	0	ENST00000269305.4:c.786del	p.Asn263IlefsTer82	p.N263Ifs*82	ENST00000269305	NM_001126112.2	262	ggT/gg						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66201844	66201844	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0006128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	41	326	0	ENST00000273854.3:c.2659-1G>A		p.X887_splice	ENST00000273854	NM_004439.5	887							NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40743859	40743859	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369430281		P-0006128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	46	594	1	ENST00000373198.4:c.3136C>T	p.Arg1046Cys	p.R1046C	ENST00000373198	NM_133170.3	1046	Cgc/Tgc						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81372780	81372780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	26	192	0	ENST00000222390.5:c.754G>A	p.Asp252Asn	p.D252N	ENST00000222390	NM_000601.4	252	Gac/Aac						NEWRECORD																																																																									
CBL	867	MSKCC	GRCh37	11	119103331	119103331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	233	362	0	ENST00000264033.4:c.369G>A	p.Met123Ile	p.M123I	ENST00000264033	NM_005188.3	123	atG/atA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577592	7577602	+	frameshift_variant	Frame_Shift_Del	DEL	GTACAGTCAGA	GTACAGTCAGA	-			P-0009416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			74	103	208	0	ENST00000269305.4:c.679_689del	p.Ser227HisfsTer9	p.S227Hfs*9	ENST00000269305	NM_001126112.2	227	TCTGACTGTACc/c						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0006679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	375	271	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs780442292		P-0006679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	376	342	2	ENST00000269305.4:c.401T>G	p.Phe134Cys	p.F134C	ENST00000269305	NM_001126112.2	134	tTt/tGt						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134851558	134851558	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs770155473		P-0006679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	89	244	0	ENST00000398015.3:c.964G>A	p.Val322Ile	p.V322I	ENST00000398015	NM_004441.4	322	Gtc/Atc						NEWRECORD																																																																									
SUZ12	23512	MSKCC	GRCh37	17	30325742	30325742	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	167	211	0	ENST00000322652.5:c.1940T>G	p.Ile647Arg	p.I647R	ENST00000322652	NM_015355.2	647	aTa/aGa						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41223057	41223057	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	404	487	0	ENST00000357654.3:c.4874A>G	p.Tyr1625Cys	p.Y1625C	ENST00000357654	NM_007294.3	1625	tAt/tGt						NEWRECORD																																																																									
RPTOR	57521	MSKCC	GRCh37	17	78899179	78899179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760865448		P-0006679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	213	227	0	ENST00000306801.3:c.2818G>A	p.Asp940Asn	p.D940N	ENST00000306801	NM_020761.2	940	Gac/Aac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	23	261	2	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173975	112173975	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	61	366	0	ENST00000257430.4:c.2684C>G	p.Ser895Ter	p.S895*	ENST00000257430	NM_000038.5	895	tCa/tGa						NEWRECORD																																																																									
GNA11	2767	MSKCC	GRCh37	19	3121098	3121098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	53	479	0	ENST00000078429.4:c.1001C>T	p.Thr334Met	p.T334M	ENST00000078429	NM_002067.2	334	aCg/aTg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	99	389	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27094351	27094351	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	68	463	0	ENST00000324856.7:c.3060delG	p.Lys1021ArgfsTer18	p.K1021Rfs*18	ENST00000324856	NM_006015.4	1020	aGg/ag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0007330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	74	530	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	52	550	1	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25468912	25468912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			41	20	389	0	ENST00000264709.3:c.1451G>A	p.Arg484Gln	p.R484Q	ENST00000264709	NM_175629.2	484	cGg/cAg						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15942876	15942876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	30	651	0	ENST00000268712.3:c.6826G>A	p.Asp2276Asn	p.D2276N	ENST00000268712	NM_006311.3	2276	Gat/Aat						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65332828	65332828	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	73	340	1	ENST00000342505.4:c.711G>T	p.Arg237Ser	p.R237S	ENST00000342505	NM_002227.2	237	agG/agT						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65332843	65332843	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	63	335	2	ENST00000342505.4:c.696G>T	p.Arg232Ser	p.R232S	ENST00000342505	NM_002227.2	232	agG/agT						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	298	245	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	152	156	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0005888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	423	441	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243668558	243668558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	269	280	0	ENST00000263826.5:c.1433G>A	p.Arg478Gln	p.R478Q	ENST00000263826	NM_005465.4	478	cGa/cAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577123	7577123	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs876660333		P-0005888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	508	450	1	ENST00000269305.4:c.815T>A	p.Val272Glu	p.V272E	ENST00000269305	NM_001126112.2	272	gTg/gAg						NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48030760	48030760	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	194	216	0	ENST00000234420.5:c.3374G>T	p.Gly1125Val	p.G1125V	ENST00000234420	NM_000179.2	1125	gGc/gTc						NEWRECORD																																																																									
HLA-A	3105	MSKCC	GRCh37	6	29912309	29912309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	273	388	0	ENST00000376809.5:c.928G>A	p.Gly310Ser	p.G310S	ENST00000376809	NM_002116.7	310	Ggc/Agc						NEWRECORD																																																																									
NF2	4771	MSKCC	GRCh37	22	30051619	30051619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	397	362	0	ENST00000338641.4:c.553G>A	p.Glu185Lys	p.E185K	ENST00000338641	NM_000268.3	185	Gag/Aag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006626-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	266	293	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006626-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	358	474	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023380	27023381	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0006626-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	94	176	0	ENST00000324856.7:c.487_488del	p.Ala163ArgfsTer236	p.A163Rfs*236	ENST00000324856	NM_006015.4	162	gcCGcc/gccc						NEWRECORD																																																																									
MSH2	4436	MSKCC	GRCh37	2	47637431	47637431	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	373	569	0	ENST00000233146.2:c.565G>T	p.Ala189Ser	p.A189S	ENST00000233146	NM_000251.2	189	Gct/Tct						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8449795	8449795	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs144935952		P-0005499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	339	436	2	ENST00000356435.5:c.3918C>A	p.Asn1306Lys	p.N1306K	ENST00000356435		1306	aaC/aaA						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56435417	56435417	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112997544		P-0005499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	309	407	0	ENST00000407977.2:c.1720G>A	p.Gly574Arg	p.G574R	ENST00000407977		574	Gga/Aga						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40713383	40713383	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	426	494	0	ENST00000373198.4:c.4132C>T	p.Arg1378Ter	p.R1378*	ENST00000373198	NM_133170.3	1378	Cga/Tga						NEWRECORD																																																																									
GATA1	2623	MSKCC	GRCh37	X	48652252	48652252	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	667	931	0	ENST00000376670.3:c.923A>G	p.Lys308Arg	p.K308R	ENST00000376670	NM_002049.3	308	aAg/aGg						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63411132	63411132	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41307359		P-0005499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	510	753	1	ENST00000330258.3:c.2035C>T	p.Arg679Trp	p.R679W	ENST00000330258	NM_152424.3	679	Cgg/Tgg						NEWRECORD																																																																									
PIK3R2	5296	MSKCC	GRCh37	19	18271931	18271976	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGGCACTGCCCGCGCCGCTCGTGACCCCCGAGGCCTCGGCCGAG	GCTGGCACTGCCCGCGCCGCTCGTGACCCCCGAGGCCTCGGCCGAG	-			P-0005499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	53	332	0	ENST00000222254.8:c.536_581del	p.Leu179ArgfsTer147	p.L179Rfs*147	ENST00000222254	NM_005027.3	178	ctGCTGGCACTGCCCGCGCCGCTCGTGACCCCCGAGGCCTCGGCCGAG/ct						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70339185	70339260	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAAGGAAAAAACAACTAAACGCCGCTTTCCTGCCTCAGGATGAACTGACGGCCTTGAATGTAAAACAAGGTTTCAA	TAAGGAAAAAACAACTAAACGCCGCTTTCCTGCCTCAGGATGAACTGACGGCCTTGAATGTAAAACAAGGTTTCAA	-			P-0005499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	271	494	0	ENST00000374080.3:c.100-35_140del		p.X34_splice	ENST00000374080		34							NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256530	115256531	+	missense_variant	Missense_Mutation	DNP	GT	GT	TG			P-0005499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	310	489	1	ENST00000369535.4:c.180_181delinsCA	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	60	ggACaa/ggCAaa						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	253	342	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0006906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	139	405	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0006906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	345	443	1	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc						NEWRECORD																																																																									
EPCAM	4072	MSKCC	GRCh37	2	47607058	47607058	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	396	438	0	ENST00000263735.4:c.808G>T	p.Ala270Ser	p.A270S	ENST00000263735	NM_002354.2	270	Gct/Tct						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30686348	30686348	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	128	255	0	ENST00000359013.4:c.279G>T	p.Met93Ile	p.M93I	ENST00000359013	NM_001024847.2	93	atG/atT						NEWRECORD																																																																									
FOXL2	668	MSKCC	GRCh37	3	138665383	138665383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	107	332	0	ENST00000330315.3:c.182C>T	p.Ala61Val	p.A61V	ENST00000330315	NM_023067.3	61	gCg/gTg						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153332936	153332936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	141	220	0	ENST00000281708.4:c.20C>T	p.Ser7Phe	p.S7F	ENST00000281708	NM_033632.3	7	tCt/tTt						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157405905	157405905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	60	301	4	ENST00000346085.5:c.2147C>T	p.Ala716Val	p.A716V	ENST00000346085	NM_020732.3	716	gCg/gTg						NEWRECORD																																																																									
NKX2-1	7080	MSKCC	GRCh37	14	36986830	36986830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	77	85	0	ENST00000354822.5:c.859C>T	p.Arg287Cys	p.R287C	ENST00000354822	NM_001079668.2	287	Cgc/Tgc						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56438263	56438263	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	262	334	0	ENST00000407977.2:c.730del	p.Ala244ProfsTer175	p.A244Pfs*175	ENST00000407977		244	Gcc/cc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0008952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	85	390	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA						NEWRECORD																																																																									
REL	5966	MSKCC	GRCh37	2	61121646	61121646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	39	362	1	ENST00000295025.8:c.268G>A	p.Glu90Lys	p.E90K	ENST00000295025	NM_002908.2	90	Gaa/Aaa						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131924444	131924444	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	90	429	0	ENST00000265335.6:c.1117T>G	p.Ser373Ala	p.S373A	ENST00000265335		373	Tct/Gct						NEWRECORD																																																																									
NCOA3	8202	MSKCC	GRCh37	20	46268795	46268795	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0008952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1044	58	775	2	ENST00000371998.3:c.3080G>T	p.Arg1027Met	p.R1027M	ENST00000371998		1027	aGg/aTg						NEWRECORD																																																																									
RYBP	23429	MSKCC	GRCh37	3	72427819	72428218	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTAAGTAAGTTATGGATCAAAAACAGCTTCTGGCAGAATATCATCAATACGCACAAGACTTCATGACACTGTGGCAATGAATCCGAACTGCCTACCACACATGCCAAAGCCGACTACAGAGTGTGCTACTCAGTTTTAGCAATAATCCAACAAGCACGGATAGCAAAGCTTGGGACCAATGTAAAATTACTATTATCTGTTTCCTGTTCTGGCCACAGTATTTAAAAAAGAGAAAAAGTCACCAGCCCCACCCATACTTAGCTCTTCACCTTCTTAGCCTACAAACCCAAGGCACAAAACCACCCTGGATTCATGATTACGATTAAGTAAATCAGAGCAGTGATTTAGTATGTCATTCTAGTTTCCAAGTACCTTGAGGTGTGATTTGTTTCGCTGGTCT	TTAAGTAAGTTATGGATCAAAAACAGCTTCTGGCAGAATATCATCAATACGCACAAGACTTCATGACACTGTGGCAATGAATCCGAACTGCCTACCACACATGCCAAAGCCGACTACAGAGTGTGCTACTCAGTTTTAGCAATAATCCAACAAGCACGGATAGCAAAGCTTGGGACCAATGTAAAATTACTATTATCTGTTTCCTGTTCTGGCCACAGTATTTAAAAAAGAGAAAAAGTCACCAGCCCCACCCATACTTAGCTCTTCACCTTCTTAGCCTACAAACCCAAGGCACAAAACCACCCTGGATTCATGATTACGATTAAGTAAATCAGAGCAGTGATTTAGTATGTCATTCTAGTTTCCAAGTACCTTGAGGTGTGATTTGTTTCGCTGGTCT	-			P-0004826-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	50	115	0	ENST00000477973.2:c.672_700-31del		p.X224_splice	ENST00000477973	NM_012234.5	224							NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175847	112175848	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0004826-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	134	335	0	ENST00000257430.4:c.4556_4557del	p.Asp1519GlyfsTer13	p.D1519Gfs*13	ENST00000257430	NM_000038.5	1519	gAT/g						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151835956	151835963	+	protein_altering_variant	In_Frame_Del	DEL	CACACAAT	CACACAAT	AC			P-0004826-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	39	433	0	ENST00000262189.6:c.14561_14568delinsGT	p.Asn4854_Val4856delinsSer	p.N4854_V4856delinsS	ENST00000262189	NM_170606.2	4854	aATTGTGTG/aGT						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0007663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	524	411	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47125357	47125357	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	287	700	0	ENST00000409792.3:c.5913A>C	p.Glu1971Asp	p.E1971D	ENST00000409792	NM_014159.6	1971	gaA/gaC						NEWRECORD																																																																									
GSK3B	2932	MSKCC	GRCh37	3	119721036	119721036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	251	475	0	ENST00000316626.5:c.139G>T	p.Gly47Cys	p.G47C	ENST00000316626		47	Ggt/Tgt						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157517413	157517413	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370064281		P-0007663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	188	389	1	ENST00000346085.5:c.3977G>A	p.Arg1326His	p.R1326H	ENST00000346085	NM_020732.3	1326	cGc/cAc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48584569	48584569	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	185	400	0	ENST00000342988.3:c.742C>T	p.Gln248Ter	p.Q248*	ENST00000342988	NM_005359.5	248	Cag/Tag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0006981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	76	619	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0006981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	1232	593	1	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg						NEWRECORD																																																																									
TSHR	7253	MSKCC	GRCh37	14	81609942	81609942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	42	421	1	ENST00000298171.2:c.1540G>A	p.Val514Ile	p.V514I	ENST00000298171	NM_000369.2	514	Gtc/Atc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0007075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	71	269	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162745588	162745588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	88	300	0	ENST00000367921.3:c.2003G>A	p.Arg668His	p.R668H	ENST00000367921	NM_006182.2	668	cGc/cAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0005250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	106	684	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	109	565	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48954211	48954242	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAATTTTAGGTAAATTTTTTACTTTTAGTAA	AAAATTTTAGGTAAATTTTTTACTTTTAGTAA	-			P-0005250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1088	79	656	0	ENST00000267163.4:c.1420_1421+30del		p.X474_splice	ENST00000267163	NM_000321.2	474							NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575192	48575192	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	108	599	0	ENST00000342988.3:c.386A>G	p.Asn129Ser	p.N129S	ENST00000342988	NM_005359.5	129	aAt/aGt						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	22	335	1	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc						NEWRECORD																																																																									
NKX3-1	4824	MSKCC	GRCh37	8	23539042	23539042	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	34	445	0	ENST00000380871.4:c.397C>G	p.His133Asp	p.H133D	ENST00000380871	NM_006167.3	133	Cac/Gac						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88727471	88727471	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	21	461	0	ENST00000360948.2:c.308C>G	p.Thr103Ser	p.T103S	ENST00000360948	NM_001012338.2	103	aCc/aGc						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123185062	123185062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	11	756	1	ENST00000218089.9:c.1109G>A	p.Arg370Gln	p.R370Q	ENST00000218089	NM_001042749.1	370	cGg/cAg						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76939115	76939115	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	33	493	0	ENST00000373344.5:c.1633C>T	p.Gln545Ter	p.Q545*	ENST00000373344	NM_000489.3	545	Caa/Taa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27101662	27101663	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0006710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	78	522	0	ENST00000324856.7:c.4948_4949del	p.Gln1650AlafsTer47	p.Q1650Afs*47	ENST00000324856	NM_006015.4	1648	gcCAca/gcca						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64577330	64577333	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0006710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	140	645	0	ENST00000337652.1:c.249_252delGTCT	p.Ile85SerfsTer33	p.I85Sfs*33	ENST00000337652	NM_130803.2	83	ctGTCT/ct						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47165172	47165172	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	30	417	0	ENST00000409792.3:c.954del	p.Gly320ValfsTer20	p.G320Vfs*20	ENST00000409792	NM_014159.6	318	ttT/tt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	173	365	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149459849	149459849	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	179	453	0	ENST00000286301.3:c.358G>C	p.Asp120His	p.D120H	ENST00000286301	NM_005211.3	120	Gac/Cac						NEWRECORD																																																																									
CCND2	894	MSKCC	GRCh37	12	4385306	4385306	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	164	460	0	ENST00000261254.3:c.331A>C	p.Lys111Gln	p.K111Q	ENST00000261254	NM_001759.3	111	Aaa/Caa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0006511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	174	416	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307							NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974776	21974776	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	74	254	0	ENST00000304494.5:c.51del	p.Thr18ArgfsTer8	p.T18Rfs*8	ENST00000304494	NM_000077.4	17	gcC/gc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0008426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	305	381	2	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106861	27106861	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	123	269	0	ENST00000324856.7:c.6472C>T	p.Arg2158Ter	p.R2158*	ENST00000324856	NM_006015.4	2158	Cga/Tga						NEWRECORD																																																																									
PIK3CB	5291	MSKCC	GRCh37	3	138374251	138374251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	64	484	1	ENST00000289153.2:c.3193C>T	p.Arg1065Trp	p.R1065W	ENST00000289153	NM_006219.2	1065	Cgg/Tgg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692869	89692869	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	29	161	1	ENST00000371953.3:c.353A>T	p.His118Leu	p.H118L	ENST00000371953	NM_000314.4	118	cAt/cTt						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2226223	2226223	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	165	509	0	ENST00000398665.3:c.3704del	p.Pro1235GlnfsTer92	p.P1235Qfs*92	ENST00000398665	NM_032482.2	1235	Cca/ca						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55593468	55593468	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	311	623	0	ENST00000288135.5:c.1625T>C	p.Ile542Thr	p.I542T	ENST00000288135	NM_000222.2	542	aTt/aCt						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5029809	5029809	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	54	598	0	ENST00000381652.3:c.253T>C	p.Phe85Leu	p.F85L	ENST00000381652	NM_004972.3	85	Ttt/Ctt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578520	7578525	+	inframe_deletion	In_Frame_Del	DEL	AGTTGG	AGTTGG	-			P-0009986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	529	588	0	ENST00000269305.4:c.405_410del	p.Cys135_Leu137delinsTrp	p.C135_L137delinsW	ENST00000269305	NM_001126112.2	135	tgCCAACTg/tgg						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249478	153249496	+	frameshift_variant	Frame_Shift_Del	DEL	TGATGTTGTCTCTCATTTG	TGATGTTGTCTCTCATTTG	-			P-0009986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	202	516	0	ENST00000281708.4:c.1282_1300del	p.Gln428SerfsTer64	p.Q428Sfs*64	ENST00000281708	NM_033632.3	428	CAAATGAGAGACAACATCAtc/tc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	59	425	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0006399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	55	547	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa						NEWRECORD																																																																									
MDM4	4194	MSKCC	GRCh37	1	204511935	204511935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	24	351	0	ENST00000367182.3:c.535G>A	p.Ala179Thr	p.A179T	ENST00000367182	NM_001278516.1	179	Gcc/Acc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55214404	55214404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	54	435	1	ENST00000275493.2:c.530C>T	p.Ser177Leu	p.S177L	ENST00000275493	NM_005228.3	177	tCg/tTg						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63532546	63532546	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	92	386	0	ENST00000307078.5:c.2033T>C	p.Leu678Pro	p.L678P	ENST00000307078	NM_004655.3	678	cTg/cCg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0006321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	182	443	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224							NEWRECORD																																																																									
CDKN2C	1031	MSKCC	GRCh37	1	51436117	51436117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	53	273	0	ENST00000262662.1:c.77A>G	p.Gln26Arg	p.Q26R	ENST00000262662		26	cAa/cGa						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11098390	11098414	+	frameshift_variant	Frame_Shift_Del	DEL	TTCCCCCGCAGCCAACGGGCCGCCC	TTCCCCCGCAGCCAACGGGCCGCCC	-			P-0006321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	79	417	0	ENST00000344626.4:c.917_941del	p.Gln306ArgfsTer12	p.Q306Rfs*12	ENST00000344626	NM_003072.3	303	aTTCCCCCGCAGCCAACGGGCCGCCCt/at						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70332415	70332415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	26	335	0	ENST00000373644.4:c.320G>A	p.Arg107Gln	p.R107Q	ENST00000373644	NM_030625.2	107	cGa/cAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0004845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	249	299	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0004845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	142	369	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0004845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	259	396	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0004845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	322	459	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89480376	89480376	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	132	421	0	ENST00000336596.2:c.2213C>A	p.Ser738Ter	p.S738*	ENST00000336596	NM_005233.5	738	tCa/tAa						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67589596	67589617	+	protein_altering_variant	In_Frame_Del	DEL	CACTCAGTTTCAAGAAAAAAGT	CACTCAGTTTCAAGAAAAAAGT	A			P-0004845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	217	374	0	ENST00000274335.5:c.1359_1380delinsA	p.Asn453_Ser460delinsLys	p.N453_S460delinsK	ENST00000274335		453	aaCACTCAGTTTCAAGAAAAAAGT/aaA						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	13	431	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0005185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	27	269	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187							NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974721	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	42	291	3	ENST00000304494.5:c.106del	p.Ala36ArgfsTer17	p.A36Rfs*17	ENST00000304494	NM_000077.4	36	Gcg/cg						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15964926	15964984	+	frameshift_variant	Frame_Shift_Del	DEL	GCCACTTGGAAAGGCTGAAGAAGTGTATAAACACTGAACAGATCTCTTCTCCACCTCCA	GCCACTTGGAAAGGCTGAAGAAGTGTATAAACACTGAACAGATCTCTTCTCCACCTCCA	-			P-0005185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			74	20	572	0	ENST00000268712.3:c.5612_5670del	p.Leu1871GlnfsTer12	p.L1871Qfs*12	ENST00000268712	NM_006311.3	1871	cTGGAGGTGGAGAAGAGATCTGTTCAGTGTTTATACACTTCTTCAGCCTTTCCAAGTGGC/c						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	11984697	11984718	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGTCATCAGGAAAACTGAAG	TGAGTCATCAGGAAAACTGAAG	-			P-0005185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			35	10	224	0	ENST00000353533.5:c.243_264del	p.Glu82SerfsTer14	p.E82Sfs*14	ENST00000353533	NM_003010.3	81	atTGAGTCATCAGGAAAACTGAAG/at						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	346	549	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49039419	49039419	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	331	609	0	ENST00000267163.4:c.2406del	p.Asn803ThrfsTer7	p.N803Tfs*7	ENST00000267163	NM_000321.2	802	Ggg/gg						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25965641	25965641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	423	514	0	ENST00000435504.4:c.3565G>A	p.Glu1189Lys	p.E1189K	ENST00000435504		1189	Gag/Aag						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99136609	99136609	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	264	333	0	ENST00000074304.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000074304	NM_001134224.1	33	tCt/tGt						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89499366	89499366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	287	407	0	ENST00000336596.2:c.2536C>A	p.Pro846Thr	p.P846T	ENST00000336596	NM_005233.5	846	Ccc/Acc						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189608586	189608586	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	1002	513	0	ENST00000264731.3:c.1661C>A	p.Ala554Glu	p.A554E	ENST00000264731	NM_003722.4	554	gCg/gAg						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55127411	55127411	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1116	302	542	0	ENST00000257290.5:c.199T>A	p.Ser67Thr	p.S67T	ENST00000257290	NM_006206.4	67	Tcc/Acc						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66242768	66242768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	393	513	2	ENST00000273854.3:c.1804G>T	p.Gly602Cys	p.G602C	ENST00000273854	NM_004439.5	602	Ggc/Tgc						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66467504	66467504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	121	488	0	ENST00000273854.3:c.765G>T	p.Leu255Phe	p.L255F	ENST00000273854	NM_004439.5	255	ttG/ttT						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1264703	1264703	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	480	440	1	ENST00000310581.5:c.2659C>A	p.Leu887Met	p.L887M	ENST00000310581	NM_198253.2	887	Ctg/Atg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175642	112175642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	75	614	0	ENST00000257430.4:c.4351G>C	p.Glu1451Gln	p.E1451Q	ENST00000257430	NM_000038.5	1451	Gaa/Caa						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117725534	117725534	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	323	453	0	ENST00000368508.3:c.347C>G	p.Thr116Arg	p.T116R	ENST00000368508	NM_002944.2	116	aCa/aGa						NEWRECORD																																																																									
ETV1	2115	MSKCC	GRCh37	7	13946210	13946210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	299	307	0	ENST00000405192.2:c.886G>A	p.Glu296Lys	p.E296K	ENST00000405192	NM_001163147.1	296	Gag/Aag						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81340833	81340833	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	458	465	0	ENST00000222390.5:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000222390	NM_000601.4	470	Gaa/Aaa						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106509367	106509367	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	522	527	1	ENST00000359195.3:c.1361C>A	p.Ser454Tyr	p.S454Y	ENST00000359195	NM_002649.2	454	tCc/tAc						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140481408	140481408	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867748453		P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	417	446	1	ENST00000288602.6:c.1400C>T	p.Ser467Leu	p.S467L	ENST00000288602	NM_004333.4	467	tCa/tTa						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87563512	87563512	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	151	312	0	ENST00000277120.3:c.1900G>C	p.Glu634Gln	p.E634Q	ENST00000277120		634	Gag/Cag						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101909971	101909971	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	216	436	0	ENST00000374994.4:c.1291C>G	p.Leu431Val	p.L431V	ENST00000374994	NM_004612.2	431	Ctt/Gtt						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43596140	43596140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	330	441	1	ENST00000355710.3:c.307C>A	p.His103Asn	p.H103N	ENST00000355710	NM_020975.4	103	Cat/Aat						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43596158	43596158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	300	394	0	ENST00000355710.3:c.325C>A	p.Leu109Ile	p.L109I	ENST00000355710	NM_020975.4	109	Ctc/Atc						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63851998	63851998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	204	252	0	ENST00000279873.7:c.2776C>T	p.His926Tyr	p.H926Y	ENST00000279873	NM_032199.2	926	Cat/Tat						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100999494	100999494	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	375	635	0	ENST00000325455.5:c.308C>A	p.Pro103His	p.P103H	ENST00000325455	NM_001202474.3	103	cCc/cAc						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18793382	18793382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	281	557	0	ENST00000266497.5:c.4079C>A	p.Ala1360Glu	p.A1360E	ENST00000266497		1360	gCg/gAg						NEWRECORD																																																																									
PPM1D	8493	MSKCC	GRCh37	17	58734074	58734074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1130	471	720	0	ENST00000305921.3:c.1132G>C	p.Glu378Gln	p.E378Q	ENST00000305921	NM_003620.3	378	Gaa/Caa						NEWRECORD																																																																									
GNA11	2767	MSKCC	GRCh37	19	3118997	3118997	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	301	517	1	ENST00000078429.4:c.681G>T	p.Met227Ile	p.M227I	ENST00000078429	NM_002067.2	227	atG/atT						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610322	10610322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	281	507	2	ENST00000171111.5:c.388C>A	p.Pro130Thr	p.P130T	ENST00000171111	NM_203500.1	130	Ccc/Acc						NEWRECORD																																																																									
MEF2B	100271849	MSKCC	GRCh37	19	19258627	19258627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	303	501	0	ENST00000162023.5:c.273G>T	p.Arg91Ser	p.R91S	ENST00000162023		91	agG/agT						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44935994	44935994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	49	758	0	ENST00000377967.4:c.2755C>T	p.Pro919Ser	p.P919S	ENST00000377967	NM_021140.2	919	Cca/Tca						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44936013	44936013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	51	791	0	ENST00000377967.4:c.2774C>T	p.Ser925Phe	p.S925F	ENST00000377967	NM_021140.2	925	tCt/tTt						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44936051	44936051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	48	741	0	ENST00000377967.4:c.2812C>A	p.Pro938Thr	p.P938T	ENST00000377967	NM_021140.2	938	Cca/Aca						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63412461	63412461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	388	741	1	ENST00000330258.3:c.706G>A	p.Gly236Arg	p.G236R	ENST00000330258	NM_152424.3	236	Ggg/Agg						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66765239	66765239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	153	339	0	ENST00000374690.3:c.251C>A	p.Pro84His	p.P84H	ENST00000374690	NM_000044.3	84	cCc/cAc						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115258744	115258745	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	380	388	0	ENST00000369535.4:c.37_38delinsTT	p.Gly13Phe	p.G13F	ENST00000369535	NM_002524.4	13	GGt/TTt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0006156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	234	666	2	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	412	559	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg						NEWRECORD																																																																									
BBC3	27113	MSKCC	GRCh37	19	47735771	47735771	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0006156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	173	492	0	ENST00000449228.1:c.88+1G>C		p.X30_splice	ENST00000449228	NM_001127240.2	30							NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123215308	123215308	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	295	587	0	ENST00000218089.9:c.2854G>C	p.Ala952Pro	p.A952P	ENST00000218089	NM_001042749.1	952	Gct/Cct						NEWRECORD																																																																									
EIF4A2	1974	MSKCC	GRCh37	3	186502466	186502468	+	inframe_deletion	In_Frame_Del	DEL	TAT	TAT	-			P-0006156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	229	526	0	ENST00000323963.5:c.193_195del	p.Ile65del	p.I65del	ENST00000323963		63	gcTATt/gct						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86645169	86645169	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs191759701		P-0006094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	66	387	2	ENST00000274376.6:c.1241G>A	p.Arg414Gln	p.R414Q	ENST00000274376	NM_002890.2	414	cGg/cAg						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38996925	38996925	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	73	457	0	ENST00000357387.3:c.452G>C	p.Arg151Thr	p.R151T	ENST00000357387	NM_152756.3	151	aGa/aCa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112163689	112163689	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1035	104	736	1	ENST00000257430.4:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000257430	NM_000038.5	538	Gaa/Taa						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106520098	106520098	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	69	336	0	ENST00000359195.3:c.2526G>C	p.Met842Ile	p.M842I	ENST00000359195	NM_002649.2	842	atG/atC						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0006094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	254	354	0	ENST00000397752.3:c.3028+2T>A		p.X1010_splice	ENST00000397752	NM_000245.2	1010							NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70426872	70426872	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	96	615	0	ENST00000373644.4:c.4532C>A	p.Pro1511Gln	p.P1511Q	ENST00000373644	NM_030625.2	1511	cCa/cAa						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15995257	15995257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	111	651	0	ENST00000268712.3:c.2936G>C	p.Arg979Thr	p.R979T	ENST00000268712	NM_006311.3	979	aGa/aCa						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15350782	15350782	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	77	674	0	ENST00000263377.2:c.3221C>A	p.Ser1074Ter	p.S1074*	ENST00000263377	NM_058243.2	1074	tCa/tAa						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76937810	76937810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	126	919	0	ENST00000373344.5:c.2938G>A	p.Asp980Asn	p.D980N	ENST00000373344	NM_000489.3	980	Gat/Aat						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76938062	76938062	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	101	723	0	ENST00000373344.5:c.2686G>C	p.Asp896His	p.D896H	ENST00000373344	NM_000489.3	896	Gat/Cat						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76938074	76938074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	98	692	0	ENST00000373344.5:c.2674G>A	p.Glu892Lys	p.E892K	ENST00000373344	NM_000489.3	892	Gaa/Aaa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	90	384	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12028689	12028689	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0005816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	52	654	0	ENST00000353533.5:c.891+1G>T		p.X297_splice	ENST00000353533	NM_003010.3	297							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	132	376	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49039339	49039339	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0009093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	252	599	0	ENST00000267163.4:c.2326-2A>G		p.X776_splice	ENST00000267163	NM_000321.2	776							NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41385183	41385183	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1423243089		P-0009093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	136	435	0	ENST00000373198.4:c.778C>T	p.Arg260Trp	p.R260W	ENST00000373198	NM_133170.3	260	Cgg/Tgg						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15364968	15364968	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	112	426	0	ENST00000263377.2:c.2153A>G	p.Glu718Gly	p.E718G	ENST00000263377	NM_058243.2	718	gAa/gGa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	120	383	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0008644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	135	240	0	ENST00000269305.4:c.559+1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187							NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76938673	76938673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	153	610	1	ENST00000373344.5:c.2075C>T	p.Ser692Leu	p.S692L	ENST00000373344	NM_000489.3	692	tCa/tTa						NEWRECORD																																																																									
MYOD1	4654	MSKCC	GRCh37	11	17742899	17742914	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGCTGGCGGACGTG	CCTGCTGGCGGACGTG	-			P-0008644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	135	308	0	ENST00000250003.3:c.810_825del	p.Ala272SerfsTer59	p.A272Sfs*59	ENST00000250003	NM_002478.4	269	ctCCTGCTGGCGGACGTG/ct						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0009155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	475	303	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115820	8115833	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCGTTTAACCCG	GCTCGTTTAACCCG	-			P-0009155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1398	546	587	0	ENST00000346208.3:c.1168_1181del	p.Ser390ArgfsTer112	p.S390Rfs*112	ENST00000346208		389	aGCTCGTTTAACCCG/a						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	45	373	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0009335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	32	388	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55953808	55953808	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004996-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1182	148	639	5	ENST00000263923.4:c.3628C>A	p.Pro1210Thr	p.P1210T	ENST00000263923	NM_002253.2	1210	Ccc/Acc						NEWRECORD																																																																									
BCL2	596	MSKCC	GRCh37	18	60985747	60985749	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0004996-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			492	77	229	0	ENST00000333681.4:c.151_153del	p.Ser51del	p.S51del	ENST00000333681		51	TCC/-						NEWRECORD																																																																									
RARA	5914	MSKCC	GRCh37	17	38487577	38487577	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004996-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			2012	126	633	0	ENST00000254066.5:c.110del	p.Pro37ArgfsTer5	p.P37Rfs*5	ENST00000254066	NM_000964.3	36	tCc/tc						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56492691	56492691	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	240	429	0	ENST00000407977.2:c.248T>C	p.Met83Thr	p.M83T	ENST00000407977		83	aTg/aCg						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	213403185	213403185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	44	287	0	ENST00000342788.4:c.70G>A	p.Asp24Asn	p.D24N	ENST00000342788	NM_005235.2	24	Gat/Aat						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	69	321	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753660142		P-0004801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	193	455	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga						NEWRECORD																																																																									
ERCC2	2068	MSKCC	GRCh37	19	45856015	45856015	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144511865		P-0004801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	123	337	0	ENST00000391945.4:c.1891C>T	p.Arg631Cys	p.R631C	ENST00000391945	NM_000400.3	631	Cgc/Tgc						NEWRECORD																																																																									
ERG	2078	MSKCC	GRCh37	21	39795407	39795407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	86	417	1	ENST00000288319.7:c.313G>A	p.Gly105Ser	p.G105S	ENST00000288319	NM_182918.3	105	Ggc/Agc						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118363770	118363775	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGGCTG	AGGCTG	-			P-0004801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	56	247	0	ENST00000534358.1:c.5005-2_5008del		p.X1669_splice	ENST00000534358	NM_005933.3	1669							NEWRECORD																																																																									
HLA-A	3105	MSKCC	GRCh37	6	29912329	29912345	+	frameshift_variant	Frame_Shift_Del	DEL	TCTCCTTGGAGCTGTGA	TCTCCTTGGAGCTGTGA	-			P-0004801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	113	393	0	ENST00000376809.5:c.950_966del	p.Leu317HisfsTer17	p.L317Hfs*17	ENST00000376809	NM_002116.7	316	gtTCTCCTTGGAGCTGTGAtc/gttc						NEWRECORD																																																																									
RAC1	5879	MSKCC	GRCh37	7	6426860	6426860	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	170	448	0	ENST00000356142.4:c.53G>C	p.Cys18Ser	p.C18S	ENST00000356142	NM_018890.3	18	tGc/tCc						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38060844	38060844	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	171	562	1	ENST00000250448.2:c.1145A>T	p.His382Leu	p.H382L	ENST00000250448	NM_004496.3	382	cAc/cTc						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47165360	47165360	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	136	525	1	ENST00000409792.3:c.766C>T	p.Gln256Ter	p.Q256*	ENST00000409792	NM_014159.6	256	Cag/Tag						NEWRECORD																																																																									
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0008482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	84	536	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa						NEWRECORD																																																																									
TNFAIP3	7128	MSKCC	GRCh37	6	138201237	138201237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	183	287	0	ENST00000237289.4:c.1936C>T	p.Pro646Ser	p.P646S	ENST00000237289	NM_001270507.1	646	Ccc/Tcc						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87325575	87325575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	56	412	0	ENST00000277120.3:c.452C>T	p.Thr151Ile	p.T151I	ENST00000277120		151	aCa/aTa						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70332117	70332117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	80	412	0	ENST00000373644.4:c.22A>G	p.Arg8Gly	p.R8G	ENST00000373644	NM_030625.2	8	Agg/Ggg						NEWRECORD																																																																									
PTPN11	5781	MSKCC	GRCh37	12	112888191	112888191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	53	478	0	ENST00000351677.2:c.207G>C	p.Glu69Asp	p.E69D	ENST00000351677	NM_002834.3	69	gaG/gaC						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	29002020	29002020	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs974445913		P-0008482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	42	316	0	ENST00000282397.4:c.1145G>A	p.Arg382His	p.R382H	ENST00000282397	NM_002019.4	382	cGc/cAc						NEWRECORD																																																																									
NKX2-1	7080	MSKCC	GRCh37	14	36987027	36987027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	43	220	0	ENST00000354822.5:c.662G>A	p.Arg221His	p.R221H	ENST00000354822	NM_001079668.2	221	cGc/cAc						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29556049	29556049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	29	265	0	ENST00000358273.4:c.2416G>A	p.Glu806Lys	p.E806K	ENST00000358273	NM_001042492.2	806	Gaa/Aaa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0008849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	404	330	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242494	55242494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	396	285	0	ENST00000275493.2:c.2264C>G	p.Ala755Gly	p.A755G	ENST00000275493	NM_005228.3	755	gCc/gGc						NEWRECORD																																																																									
MDM4	4194	MSKCC	GRCh37	1	204513718	204513718	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	59	251	0	ENST00000367182.3:c.728A>T	p.Glu243Val	p.E243V	ENST00000367182	NM_001278516.1	243	gAg/gTg						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70348996	70348996	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	116	561	0	ENST00000374080.3:c.3508C>G	p.Arg1170Gly	p.R1170G	ENST00000374080		1170	Cgg/Ggg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577132	7577132	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	140	474	0	ENST00000269305.4:c.806del	p.Ser269ThrfsTer76	p.S269Tfs*76	ENST00000269305	NM_001126112.2	269	aGc/ac						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52437596	52437597	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0008849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	129	683	0	ENST00000460680.1:c.1564_1565del	p.Pro522CysfsTer14	p.P522Cfs*14	ENST00000460680	NM_004656.3	522	CCt/t						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	161	269	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	127	416	0	ENST00000269305.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000269305	NM_001126112.2	273	Cgt/Agt						NEWRECORD																																																																									
MCL1	4170	MSKCC	GRCh37	1	150551932	150551932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	79	282	0	ENST00000369026.2:c.75C>A	p.Ser25Arg	p.S25R	ENST00000369026	NM_021960.4	25	agC/agA						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156845947	156845947	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	217	412	0	ENST00000524377.1:c.1577T>A	p.Leu526His	p.L526H	ENST00000524377	NM_002529.3	526	cTt/cAt						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243736341	243736341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	59	286	0	ENST00000263826.5:c.706C>A	p.His236Asn	p.H236N	ENST00000263826	NM_005465.4	236	Cat/Aat						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30715668	30715668	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	41	352	0	ENST00000359013.4:c.1401C>G	p.Phe467Leu	p.F467L	ENST00000359013	NM_001024847.2	467	ttC/ttG						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	82	223	0	ENST00000263967.3:c.1034A>C	p.Asn345Thr	p.N345T	ENST00000263967	NM_006218.2	345	aAt/aCt						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101900325	101900325	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	28	318	0	ENST00000374994.4:c.759G>T	p.Met253Ile	p.M253I	ENST00000374994	NM_004612.2	253	atG/atT						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8100514	8100514	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	112	404	0	ENST00000346208.3:c.488C>A	p.Pro163Gln	p.P163Q	ENST00000346208		163	cCg/cAg						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64573830	64573830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	39	256	2	ENST00000337652.1:c.938C>T	p.Ser313Leu	p.S313L	ENST00000337652	NM_130803.2	313	tCa/tTa						NEWRECORD																																																																									
GPS2	2874	MSKCC	GRCh37	17	7216398	7216398	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	116	449	1	ENST00000380728.2:c.850G>T	p.Gly284Ter	p.G284*	ENST00000380728		284	Gga/Tga						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10244345	10244345	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	112	441	0	ENST00000340748.4:c.4849T>C	p.Ter1617GlnextTer23	p.*1617Qext*23	ENST00000340748		1617	Tag/Cag						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9561429	9561429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	80	323	1	ENST00000353224.5:c.353G>T	p.Gly118Val	p.G118V	ENST00000353224	NM_177990.2	118	gGc/gTc						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41545961	41545961	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	54	487	0	ENST00000263253.7:c.2576T>G	p.Ile859Ser	p.I859S	ENST00000263253	NM_001429.3	859	aTt/aGt						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0006436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	127	604	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720721	89720721	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	13	91	0	ENST00000371953.3:c.875del	p.Asn292MetfsTer15	p.N292Mfs*15	ENST00000371953	NM_000314.4	291	gAa/ga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0007165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	31	420	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	102	562	2	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98211416	98211416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	43	508	1	ENST00000331920.6:c.3739G>A	p.Ala1247Thr	p.A1247T	ENST00000331920	NM_000264.3	1247	Gcg/Acg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	194	371	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac						NEWRECORD																																																																									
MYOD1	4654	MSKCC	GRCh37	11	17742463	17742463	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	167	528	0	ENST00000250003.3:c.650delC	p.Pro217ArgfsTer33	p.P217Rfs*33	ENST00000250003	NM_002478.4	215	ggC/gg						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46233110	46233110	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0007420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	191	255	0	ENST00000334344.6:c.1331-2A>G		p.X444_splice	ENST00000334344	NM_152641.2	444							NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29677328	29677331	+	frameshift_variant	Frame_Shift_Del	DEL	TTCC	TTCC	GAA			P-0007420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	303	392	1	ENST00000358273.4:c.7449_7452delinsGAA	p.Ser2484AsnfsTer5	p.S2484Nfs*5	ENST00000358273	NM_001042492.2	2483	ccTTCC/ccGAA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577530	7577530	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004023-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			610	23	318	0	ENST00000269305.4:c.751A>T	p.Ile251Phe	p.I251F	ENST00000269305	NM_001126112.2	251	Atc/Ttc						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21970913	21970913	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	452	602	0	ENST00000304494.5:c.445G>T	p.Glu149Ter	p.E149*	ENST00000304494	NM_000077.4	149	Gaa/Taa						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63533763	63533763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	452	544	0	ENST00000307078.5:c.1391C>T	p.Ser464Phe	p.S464F	ENST00000307078	NM_004655.3	464	tCc/tTc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	654	626	1	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63413131	63413131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	381	291	0	ENST00000330258.3:c.36G>T	p.Lys12Asn	p.K12N	ENST00000330258	NM_152424.3	12	aaG/aaT						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27100977	27100977	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	612	594	0	ENST00000324856.7:c.4259A>T	p.Gln1420Leu	p.Q1420L	ENST00000324856	NM_006015.4	1420	cAg/cTg						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65301779	65301779	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	315	505	0	ENST00000342505.4:c.3258+2T>A		p.X1086_splice	ENST00000342505	NM_002227.2	1086							NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256593	115256593	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	285	472	0	ENST00000369535.4:c.118T>G	p.Tyr40Asp	p.Y40D	ENST00000369535	NM_002524.4	40	Tac/Gac						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162748442	162748442	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	206	636	0	ENST00000367921.3:c.2356G>C	p.Glu786Gln	p.E786Q	ENST00000367921	NM_006182.2	786	Gaa/Caa						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55136846	55136846	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	563	849	0	ENST00000257290.5:c.1168G>T	p.Gly390Cys	p.G390C	ENST00000257290	NM_006206.4	390	Ggc/Tgc						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143043306	143043306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	449	733	1	ENST00000262992.4:c.2110G>A	p.Val704Met	p.V704M	ENST00000262992	NM_001101669.1	704	Gtg/Atg						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1294033	1294033	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1777	596	805	4	ENST00000310581.5:c.968C>A	p.Pro323Gln	p.P323Q	ENST00000310581	NM_198253.2	323	cCg/cAg						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180052996	180052996	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	418	627	0	ENST00000261937.6:c.1294C>G	p.Pro432Ala	p.P432A	ENST00000261937	NM_182925.4	432	Ccc/Gcc						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87570395	87570395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	494	789	1	ENST00000277120.3:c.2135G>T	p.Gly712Val	p.G712V	ENST00000277120		712	gGg/gTg						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133750423	133750423	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	351	784	0	ENST00000318560.5:c.1254C>G	p.Ile418Met	p.I418M	ENST00000318560	NM_005157.4	418	atC/atG						NEWRECORD																																																																									
RPS6KA4	8986	MSKCC	GRCh37	11	64132834	64132834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	535	797	2	ENST00000334205.4:c.968G>A	p.Arg323His	p.R323H	ENST00000334205	NM_003942.2	323	cGc/cAc						NEWRECORD																																																																									
MRE11A	4361	MSKCC	GRCh37	11	94212919	94212919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	791	449	1	ENST00000323929.3:c.323G>T	p.Trp108Leu	p.W108L	ENST00000323929	NM_005591.3	108	tGg/tTg						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46205250	46205250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	697	770	1	ENST00000334344.6:c.334G>A	p.Glu112Lys	p.E112K	ENST00000334344	NM_152641.2	112	Gag/Aag						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57864232	57864232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	512	891	1	ENST00000228682.2:c.1709C>T	p.Pro570Leu	p.P570L	ENST00000228682	NM_005269.2	570	cCa/cTa						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133226318	133226318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	325	752	1	ENST00000320574.5:c.3740C>T	p.Pro1247Leu	p.P1247L	ENST00000320574	NM_006231.2	1247	cCg/cTg						NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45007791	45007791	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	380	570	0	ENST00000558401.1:c.238T>C	p.Trp80Arg	p.W80R	ENST00000558401	NM_004048.2	80	Tgg/Cgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577111	7577111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	613	755	2	ENST00000269305.4:c.827C>A	p.Ala276Asp	p.A276D	ENST00000269305	NM_001126112.2	276	gCc/gAc						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29528438	29528438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	592	571	4	ENST00000358273.4:c.1195G>T	p.Ala399Ser	p.A399S	ENST00000358273	NM_001042492.2	399	Gct/Tct						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7122892	7122892	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	416	653	0	ENST00000302850.5:c.3367G>T	p.Glu1123Ter	p.E1123*	ENST00000302850	NM_000208.2	1123	Gag/Tag						NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50912486	50912486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	429	873	6	ENST00000440232.2:c.2000G>T	p.Arg667Leu	p.R667L	ENST00000440232	NM_002691.3	667	cGg/cTg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40864900	40864900	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1156	583	671	0	ENST00000373198.4:c.2370-2A>G		p.X790_splice	ENST00000373198	NM_133170.3	790							NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40877412	40877412	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	326	520	0	ENST00000373198.4:c.2284A>G	p.Asn762Asp	p.N762D	ENST00000373198	NM_133170.3	762	Aac/Gac						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41513788	41513788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	147	565	0	ENST00000263253.7:c.692G>A	p.Gly231Glu	p.G231E	ENST00000263253	NM_001429.3	231	gGa/gAa						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56440756	56440756	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	429	486	0	ENST00000407977.2:c.462del	p.Leu155TrpfsTer3	p.L155Wfs*3	ENST00000407977		154	ccG/cc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	16	495	0	ENST00000263967.3:c.3129G>C	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atC						NEWRECORD																																																																									
HIST3H3	8290	MSKCC	GRCh37	1	228612911	228612911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1587	112	935	0	ENST00000366696.1:c.116C>T	p.Pro39Leu	p.P39L	ENST00000366696	NM_003493.2	39	cCg/cTg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916728	178916728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1497	35	1108	0	ENST00000263967.3:c.115G>A	p.Glu39Lys	p.E39K	ENST00000263967	NM_006218.2	39	Gag/Aag						NEWRECORD																																																																									
PRDM1	639	MSKCC	GRCh37	6	106553135	106553135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	63	356	1	ENST00000369096.4:c.1100C>A	p.Ser367Tyr	p.S367Y	ENST00000369096	NM_001198.3	367	tCt/tAt						NEWRECORD																																																																									
RHEB	6009	MSKCC	GRCh37	7	151167722	151167722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	28	363	0	ENST00000262187.5:c.397G>A	p.Glu133Lys	p.E133K	ENST00000262187	NM_005614.3	133	Gaa/Aaa						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55372025	55372025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	52	244	0	ENST00000297316.4:c.715G>A	p.Ala239Thr	p.A239T	ENST00000297316	NM_022454.3	239	Gcc/Acc						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061549	38061549	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	28	259	0	ENST00000250448.2:c.440A>C	p.Asn147Thr	p.N147T	ENST00000250448	NM_004496.3	147	aAc/aCc						NEWRECORD																																																																									
SRSF2	6427	MSKCC	GRCh37	17	74732322	74732322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			4167	509	1170	0	ENST00000359995.5:c.587C>T	p.Ser196Phe	p.S196F	ENST00000359995	NM_001195427.1	196	tCc/tTc						NEWRECORD																																																																									
SRSF2	6427	MSKCC	GRCh37	17	74732373	74732373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			4339	422	1198	2	ENST00000359995.5:c.536C>T	p.Ser179Phe	p.S179F	ENST00000359995	NM_001195427.1	179	tCt/tTt						NEWRECORD																																																																									
SRSF2	6427	MSKCC	GRCh37	17	74732484	74732484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3317	399	888	0	ENST00000359995.5:c.425C>T	p.Ser142Phe	p.S142F	ENST00000359995	NM_001195427.1	142	tCt/tTt						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0005810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	139	585	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc						NEWRECORD																																																																									
FANCC	2176	MSKCC	GRCh37	9	97887405	97887405	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	145	660	0	ENST00000289081.3:c.959A>G	p.Gln320Arg	p.Q320R	ENST00000289081	NM_000136.2	320	cAg/cGg						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0009939-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	36	644	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc						NEWRECORD																																																																									
MAPK1	5594	MSKCC	GRCh37	22	22221726	22221726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009939-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	11	37	0	ENST00000215832.6:c.5C>T	p.Ala2Val	p.A2V	ENST00000215832	NM_002745.4	2	gCg/gTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0007507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	48	467	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577578	7577578	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	40	400	0	ENST00000269305.4:c.703A>G	p.Asn235Asp	p.N235D	ENST00000269305	NM_001126112.2	235	Aac/Gac						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931589		P-0007507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	34	503	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0004798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	180	393	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0004798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	129	400	0	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0004798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	105	476	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0004798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	159	549	1	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11174416	11174416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	125	603	0	ENST00000361445.4:c.7259C>T	p.Ala2420Val	p.A2420V	ENST00000361445	NM_004958.3	2420	gCc/gTc						NEWRECORD																																																																									
CTLA4	1493	MSKCC	GRCh37	2	204736188	204736188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	36	494	0	ENST00000302823.3:c.545C>T	p.Thr182Ile	p.T182I	ENST00000302823	NM_005214.4	182	aCa/aTa						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66535435	66535435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	39	129	1	ENST00000273854.3:c.26C>T	p.Ala9Val	p.A9V	ENST00000273854	NM_004439.5	9	gCg/gTg						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157528897	157528897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	82	447	0	ENST00000346085.5:c.6622G>A	p.Val2208Met	p.V2208M	ENST00000346085	NM_020732.3	2208	Gtg/Atg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108196798	108196798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	26	365	0	ENST00000278616.4:c.6821C>T	p.Ala2274Val	p.A2274V	ENST00000278616	NM_000051.3	2274	gCa/gTa						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5211778	5211778	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	89	467	0	ENST00000357368.4:c.5057G>A	p.Arg1686Gln	p.R1686Q	ENST00000357368	NM_002850.3	1686	cGg/cAg						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39933299	39933309	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTAACGGTC	TGGTAACGGTC	-			P-0004798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	207	364	0	ENST00000378444.4:c.1290_1300del	p.Thr431ArgfsTer5	p.T431Rfs*5	ENST00000378444	NM_001123385.1	430	caGACCGTTACCAaa/caaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	38	548	3	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0008383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1104	58	642	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	77	499	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0008582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	71	596	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1131	138	563	1	ENST00000349496.5:c.1982G>A	p.Arg661Gln	p.R661Q	ENST00000349496	NM_001904.3	661	cGa/cAa						NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50918736	50918736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1089	82	563	0	ENST00000440232.2:c.2606C>T	p.Ser869Leu	p.S869L	ENST00000440232	NM_002691.3	869	tCg/tTg						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56487277	56487277	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1035001455		P-0008582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	84	353	1	ENST00000267101.3:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000267101	NM_001982.3	475	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577520	7577520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	128	484	0	ENST00000269305.4:c.761T>A	p.Ile254Asn	p.I254N	ENST00000269305	NM_001126112.2	254	aTc/aAc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	350	465	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
IGF2	3481	MSKCC	GRCh37	11	2154748	2154748	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	250	589	0	ENST00000434045.2:c.473C>T	p.Pro158Leu	p.P158L	ENST00000434045	NM_001127598.1	158	cCg/cTg						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27057811	27057811	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1208	347	816	0	ENST00000324856.7:c.1519C>T	p.Gln507Ter	p.Q507*	ENST00000324856	NM_006015.4	507	Caa/Taa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27058093	27058093	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	42	70	0	ENST00000324856.7:c.1801C>T	p.Gln601Ter	p.Q601*	ENST00000324856	NM_006015.4	601	Cag/Tag						NEWRECORD																																																																									
PDCD1	5133	MSKCC	GRCh37	2	242793439	242793439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	441	471	0	ENST00000334409.5:c.638C>A	p.Pro213His	p.P213H	ENST00000334409	NM_005018.2	213	cCc/cAc						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153271223	153271223	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	128	393	0	ENST00000281708.4:c.555G>C	p.Lys185Asn	p.K185N	ENST00000281708	NM_033632.3	185	aaG/aaC						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131931309	131931309	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	213	622	0	ENST00000265335.6:c.2014C>G	p.Gln672Glu	p.Q672E	ENST00000265335		672	Cag/Gag						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70406240	70406240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	205	642	1	ENST00000373644.4:c.3754G>T	p.Glu1252Ter	p.E1252*	ENST00000373644	NM_030625.2	1252	Gag/Tag						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108180972	108180972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	130	381	0	ENST00000278616.4:c.5848G>A	p.Ala1950Thr	p.A1950T	ENST00000278616	NM_000051.3	1950	Gct/Act						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46246147	46246147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	141	430	0	ENST00000334344.6:c.4241G>A	p.Arg1414Lys	p.R1414K	ENST00000334344	NM_152641.2	1414	aGa/aAa						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115110034	115110034	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	379	496	1	ENST00000257566.3:c.1844C>G	p.Ser615Cys	p.S615C	ENST00000257566	NM_016569.3	615	tCc/tGc						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32911829	32911829	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	290	949	1	ENST00000380152.3:c.3337G>T	p.Glu1113Ter	p.E1113*	ENST00000380152		1113	Gaa/Taa						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42059279	42059279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1465	396	915	1	ENST00000219905.7:c.8999C>A	p.Ser3000Tyr	p.S3000Y	ENST00000219905	NM_001164273.1	3000	tCc/tAc						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610376	10610376	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	537	627	0	ENST00000171111.5:c.334A>T	p.Thr112Ser	p.T112S	ENST00000171111	NM_203500.1	112	Acc/Tcc						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610380	10610380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	549	631	0	ENST00000171111.5:c.330G>T	p.Met110Ile	p.M110I	ENST00000171111	NM_203500.1	110	atG/atT						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221299	1221300	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	503	600	0	ENST00000326873.7:c.823_824del	p.Pro275GlyfsTer9	p.P275Gfs*9	ENST00000326873	NM_000455.4	274	atCCcg/atcg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0008868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	277	542	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
MAP2K1	5604	MSKCC	GRCh37	15	66729094	66729099	+	inframe_deletion	In_Frame_Del	DEL	TGGAGA	TGGAGA	-			P-0008868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	209	433	0	ENST00000307102.5:c.303_308delGGAGAT	p.Glu102_Ile103del	p.E102_I103del	ENST00000307102	NM_002755.3	101	cTGGAGAtc/ctc						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65330619	65330619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	106	462	0	ENST00000342505.4:c.1027C>T	p.Arg343Trp	p.R343W	ENST00000342505	NM_002227.2	343	Cgg/Tgg						NEWRECORD																																																																									
AURKA	6790	MSKCC	GRCh37	20	54961523	54961523	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	50	359	0	ENST00000312783.6:c.109T>A	p.Leu37Ile	p.L37I	ENST00000312783	NM_198436.1	37	Tta/Ata						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0006853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	222	420	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0006853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	103	268	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	260	270	0	ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133748277	133748277	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	202	350	0	ENST00000318560.5:c.938T>C	p.Ile313Thr	p.I313T	ENST00000318560	NM_005157.4	313	aTc/aCc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151879451	151879451	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1193	153	531	0	ENST00000262189.6:c.5494A>G	p.Lys1832Glu	p.K1832E	ENST00000262189	NM_170606.2	1832	Aaa/Gaa						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44950031	44950031	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1145	230	664	0	ENST00000377967.4:c.3800T>G	p.Ile1267Arg	p.I1267R	ENST00000377967	NM_021140.2	1267	aTa/aGa						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0006455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1237	1527	589	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0006455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	350	526	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72828914	72828914	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147043604		P-0006455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1136	80	712	1	ENST00000268489.5:c.7667C>T	p.Ala2556Val	p.A2556V	ENST00000268489	NM_006885.3	2556	gCg/gTg						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30668352	30668352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	85	680	2	ENST00000376406.3:c.6160C>T	p.Arg2054Trp	p.R2054W	ENST00000376406	NM_014641.2	2054	Cgg/Tgg						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68842337	68842337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	134	471	1	ENST00000261769.5:c.398C>T	p.Ser133Phe	p.S133F	ENST00000261769	NM_004360.3	133	tCt/tTt						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41244696	41244696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	109	536	1	ENST00000357654.3:c.2852G>A	p.Arg951Lys	p.R951K	ENST00000357654	NM_007294.3	951	aGg/aAg						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149433955	149433955	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	53	468	3	ENST00000286301.3:c.2693C>A	p.Thr898Asn	p.T898N	ENST00000286301	NM_005211.3	898	aCc/aAc						NEWRECORD																																																																									
NBN	4683	MSKCC	GRCh37	8	90955516	90955516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	78	409	0	ENST00000265433.3:c.2149A>G	p.Thr717Ala	p.T717A	ENST00000265433	NM_002485.4	717	Aca/Gca						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8485983	8485983	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	47	549	0	ENST00000356435.5:c.2834C>A	p.Ala945Glu	p.A945E	ENST00000356435		945	gCa/gAa						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108199854	108199854	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	74	356	0	ENST00000278616.4:c.7196A>G	p.Gln2399Arg	p.Q2399R	ENST00000278616	NM_000051.3	2399	cAa/cGa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	149	370	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	57	447	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc						NEWRECORD																																																																									
HOXB13	10481	MSKCC	GRCh37	17	46805730	46805730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	47	509	2	ENST00000290295.7:c.226G>T	p.Ala76Ser	p.A76S	ENST00000290295	NM_006361.5	76	Gct/Tct						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15292614	15292614	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0007240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	26	287	0	ENST00000263388.2:c.2567-2A>T		p.X856_splice	ENST00000263388	NM_000435.2	856							NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47039610	47039610	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0007240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	34	169	0	ENST00000329236.7:c.829-1G>A		p.X277_splice	ENST00000329236	NM_001204466.1	277							NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	66	415	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198267490	198267490	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	19	380	0	ENST00000335508.6:c.1867T>C	p.Tyr623His	p.Y623H	ENST00000335508	NM_012433.2	623	Tat/Cat						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67592123	67592123	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	43	473	0	ENST00000274335.5:c.1939C>G	p.Leu647Val	p.L647V	ENST00000274335		647	Ctt/Gtt						NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50905504	50905504	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373192520		P-0005219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	44	626	0	ENST00000440232.2:c.632G>A	p.Arg211His	p.R211H	ENST00000440232	NM_002691.3	211	cGc/cAc						NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100608879	100608879	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0005219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	28	645	0	ENST00000308731.7:c.1729A>T	p.Lys577Ter	p.K577*	ENST00000308731	NM_000061.2	577	Aaa/Taa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	852	470	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0009905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	283	642	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574030	7574030	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	355	533	0	ENST00000269305.4:c.997del	p.Arg333ValfsTer12	p.R333Vfs*12	ENST00000269305	NM_001126112.2	333	Cgt/gt						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86658488	86658488	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0009905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	92	437	0	ENST00000274376.6:c.1453G>T	p.Gly485Cys	p.G485C	ENST00000274376	NM_002890.2	485	Ggc/Tgc						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32164151	32164151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	101	358	0	ENST00000375023.3:c.5248G>T	p.Ala1750Ser	p.A1750S	ENST00000375023	NM_004557.3	1750	Gcc/Tcc						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50467910	50467910	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	87	255	0	ENST00000331340.3:c.1145T>C	p.Val382Ala	p.V382A	ENST00000331340	NM_006060.4	382	gTg/gCg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49427531	49427531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	121	460	0	ENST00000301067.7:c.10957G>A	p.Gly3653Arg	p.G3653R	ENST00000301067	NM_003482.3	3653	Gga/Aga						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120471712	120471712	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75423398		P-0005953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	524	314	0	ENST00000256646.2:c.3779G>A	p.Arg1260His	p.R1260H	ENST00000256646	NM_024408.3	1260	cGt/cAt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108165688	108165688	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	544	362	0	ENST00000278616.4:c.4811A>T	p.Asp1604Val	p.D1604V	ENST00000278616	NM_000051.3	1604	gAt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	217	323	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974792	21974792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	108	135	0	ENST00000304494.5:c.35C>T	p.Ser12Leu	p.S12L	ENST00000304494	NM_000077.4	12	tCg/tTg						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44929487	44929487	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	276	456	0	ENST00000377967.4:c.2587C>G	p.Gln863Glu	p.Q863E	ENST00000377967	NM_021140.2	863	Cag/Gag						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106180867	106180867	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	270	358	1	ENST00000380013.4:c.3895A>G	p.Lys1299Glu	p.K1299E	ENST00000380013	NM_001127208.2	1299	Aag/Gag						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857152	9857152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	175	352	0	ENST00000330684.3:c.4249C>T	p.Arg1417Trp	p.R1417W	ENST00000330684	NM_001134407.1	1417	Cgg/Tgg						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68847399	68847399	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0006355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	176	305	0	ENST00000261769.5:c.1320+1G>C		p.X440_splice	ENST00000261769	NM_004360.3	440							NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15961875	15961875	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	175	281	0	ENST00000268712.3:c.5920G>T	p.Glu1974Ter	p.E1974*	ENST00000268712	NM_006311.3	1974	Gag/Tag						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15366218	15366218	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	190	391	0	ENST00000263377.2:c.1937A>T	p.Asn646Ile	p.N646I	ENST00000263377	NM_058243.2	646	aAt/aTt						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57474036	57474036	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750429818		P-0006355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	181	224	0	ENST00000371085.3:c.253G>A	p.Asp85Asn	p.D85N	ENST00000371085	NM_000516.4	85	Gat/Aat						NEWRECORD																																																																									
EIF4A2	1974	MSKCC	GRCh37	3	186502382	186502384	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0006355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1450	402	480	0	ENST00000323963.5:c.109_111del	p.Asp37del	p.D37del	ENST00000323963		35	ttTGAt/ttt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916935	178916947	+	protein_altering_variant	In_Frame_Del	DEL	CGTGAAGAAAAGA	CGTGAAGAAAAGA	G			P-0006355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	892	524	0	ENST00000263967.3:c.322_334delinsG	p.Arg108_Ile112delinsVal	p.R108_I112delinsV	ENST00000263967	NM_006218.2	108	CGTGAAGAAAAGAtc/Gtc						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52696294	52696294	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0008301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	42	316	0	ENST00000394830.3:c.385-2A>T		p.X129_splice	ENST00000394830	NM_018313.4	129							NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295257	1295257	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0008301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	26	207	0				ENST00000310581	NM_198253.2								NEWRECORD																																																																									
CDKN1A	1026	MSKCC	GRCh37	6	36652146	36652146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	52	253	0	ENST00000244741.5:c.268G>A	p.Gly90Arg	p.G90R	ENST00000244741	NM_000389.4	90	Gga/Aga						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31022774	31022790	+	frameshift_variant	Frame_Shift_Del	DEL	CACTGGGGACCAGCCAT	CACTGGGGACCAGCCAT	-			P-0008301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	39	205	0	ENST00000375687.4:c.2259_2275del	p.Thr754ProfsTer14	p.T754Pfs*14	ENST00000375687	NM_015338.5	753	ccCACTGGGGACCAGCCATgc/ccgc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			731	321	486	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145738230	145738230	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs186739072		P-0003964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			464	152	329	0	ENST00000428558.2:c.2755G>A	p.Ala919Thr	p.A919T	ENST00000428558	NM_004260.3	919	Gcc/Acc						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5022020	5022020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			652	75	489	0	ENST00000381652.3:c.33G>T	p.Met11Ile	p.M11I	ENST00000381652	NM_004972.3	11	atG/atT						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8633317	8633317	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			840	127	614	0	ENST00000356435.5:c.352G>A	p.Glu118Lys	p.E118K	ENST00000356435		118	Gaa/Aaa						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87635188	87635188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	63	335	0	ENST00000277120.3:c.2240C>T	p.Thr747Met	p.T747M	ENST00000277120		747	aCg/aTg						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133210798	133210798	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			732	103	616	0	ENST00000320574.5:c.5978A>T	p.Gln1993Leu	p.Q1993L	ENST00000320574	NM_006231.2	1993	cAg/cTg						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602584	10602584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			275	127	398	0	ENST00000171111.5:c.994G>T	p.Gly332Cys	p.G332C	ENST00000171111	NM_203500.1	332	Ggc/Tgc						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610694	10610694	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			98	55	150	0	ENST00000171111.5:c.16A>T	p.Arg6Trp	p.R6W	ENST00000171111	NM_203500.1	6	Agg/Tgg						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189582044	189582057	+	frameshift_variant	Frame_Shift_Del	DEL	CTACTGCCAAATTG	CTACTGCCAAATTG	-			P-0003964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			588	45	386	0	ENST00000264731.3:c.604_617del	p.Tyr202LysfsTer29	p.Y202Kfs*29	ENST00000264731	NM_003722.4	201	ctCTACTGCCAAATTGca/ctca						NEWRECORD																																																																									
PMS1	5378	MSKCC	GRCh37	2	190728530	190728530	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	502	495	3	ENST00000441310.2:c.1918G>T	p.Glu640Ter	p.E640*	ENST00000441310	NM_000534.4	640	Gaa/Taa						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249468	153249468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	321	521	0	ENST00000281708.4:c.1310G>T	p.Gly437Val	p.G437V	ENST00000281708	NM_033632.3	437	gGa/gTa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0009690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	116	425	2	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0009690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	61	261	2	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91358367	91358367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	130	588	2	ENST00000355112.3:c.4112C>T	p.Thr1371Met	p.T1371M	ENST00000355112	NM_000057.2	1371	aCg/aTg						NEWRECORD																																																																									
TRAF7	84231	MSKCC	GRCh37	16	2220648	2220648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1160	303	640	2	ENST00000326181.6:c.265G>A	p.Ala89Thr	p.A89T	ENST00000326181	NM_032271.2	89	Gcc/Acc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	299	347	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37864694	37864694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1562	174	647	1	ENST00000269571.5:c.346G>A	p.Val116Met	p.V116M	ENST00000269571		116	Gtg/Atg						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9561138	9561138	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	103	487	0	ENST00000353224.5:c.644T>A	p.Leu215His	p.L215H	ENST00000353224	NM_177990.2	215	cTc/cAc						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123195709	123195709	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	215	394	0	ENST00000218089.9:c.1623A>C	p.Arg541Ser	p.R541S	ENST00000218089	NM_001042749.1	541	agA/agC						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0006421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	166	659	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0006421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	86	391	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89445074	89445074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	71	449	0	ENST00000336596.2:c.1394G>T	p.Gly465Val	p.G465V	ENST00000336596	NM_005233.5	465	gGg/gTg						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142266679	142266679	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146504354		P-0006421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	298	463	0	ENST00000350721.4:c.3245G>A	p.Arg1082His	p.R1082H	ENST00000350721	NM_001184.3	1082	cGt/cAt						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55973903	55973903	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0006421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	61	277	0	ENST00000263923.4:c.1412+1G>T		p.X471_splice	ENST00000263923	NM_002253.2	471							NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117632257	117632257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	58	448	0	ENST00000368508.3:c.6159G>T	p.Leu2053Phe	p.L2053F	ENST00000368508	NM_002944.2	2053	ttG/ttT						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50455144	50455144	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	215	295	0	ENST00000331340.3:c.691G>T	p.Gly231Cys	p.G231C	ENST00000331340	NM_006060.4	231	Ggc/Tgc						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115117753	115117753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	71	484	0	ENST00000257566.3:c.682G>A	p.Ala228Thr	p.A228T	ENST00000257566	NM_016569.3	228	Gct/Act						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63411970	63411970	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	130	923	0	ENST00000330258.3:c.1197G>T	p.Glu399Asp	p.E399D	ENST00000330258	NM_152424.3	399	gaG/gaT						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48939062	48939074	+	frameshift_variant	Frame_Shift_Del	DEL	TTTTATGAATTCT	TTTTATGAATTCT	-			P-0006421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	52	348	0	ENST00000267163.4:c.894_906del	p.Phe299LeufsTer4	p.F299Lfs*4	ENST00000267163	NM_000321.2	298	ccTTTTATGAATTCT/cc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577147	7577147	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	210	612	1	ENST00000269305.4:c.791del	p.Leu264HisfsTer81	p.L264Hfs*81	ENST00000269305	NM_001126112.2	264	cTa/ca						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187525534	187525536	+	missense_variant	Missense_Mutation	ONP	CAC	CAC	AAA			P-0006421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	113	541	0	ENST00000441802.2:c.10543_10545delinsTTT	p.Val3515Phe	p.V3515F	ENST00000441802	NM_005245.3	3515	GTG/TTT						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0006915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	290	525	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0006915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	200	483	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0006915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	129	360	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692911	89692911	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909241		P-0006915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	120	349	0	ENST00000371953.3:c.395G>A	p.Gly132Asp	p.G132D	ENST00000371953	NM_000314.4	132	gGt/gAt						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187560928	187560928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	62	362	0	ENST00000441802.2:c.3590C>T	p.Thr1197Ile	p.T1197I	ENST00000441802	NM_005245.3	1197	aCa/aTa						NEWRECORD																																																																									
PLK2	10769	MSKCC	GRCh37	5	57753154	57753157	+	frameshift_variant	Frame_Shift_Del	DEL	TTTC	TTTC	-			P-0006915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	168	384	0	ENST00000274289.3:c.859_862del	p.Glu287LeufsTer5	p.E287Lfs*5	ENST00000274289	NM_006622.3	287	GAAAct/ct						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	42	238	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0008165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	60	314	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67473756	67473756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	49	226	0	ENST00000327367.4:c.836G>A	p.Arg279Lys	p.R279K	ENST00000327367	NM_005902.3	279	aGg/aAg						NEWRECORD																																																																									
PPP6C	5537	MSKCC	GRCh37	9	127920568	127920568	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	174	460	0	ENST00000373547.4:c.331C>G	p.Arg111Gly	p.R111G	ENST00000373547	NM_002721.4	111	Cga/Gga						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692886	89692886	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	62	169	0	ENST00000371953.3:c.370T>A	p.Cys124Ser	p.C124S	ENST00000371953	NM_000314.4	124	Tgt/Agt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0006275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	270	412	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	149	318	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40727168	40727168	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761148007		P-0006275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	576	396	1	ENST00000373198.4:c.3796G>A	p.Val1266Met	p.V1266M	ENST00000373198	NM_133170.3	1266	Gtg/Atg						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70117745	70117778	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCATCCGCGAGGCGGTCAGCCAGGTGCTCAAA	GTGCATCCGCGAGGCGGTCAGCCAGGTGCTCAAA	-			P-0006275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	77	421	0	ENST00000245479.2:c.214_247del	p.Cys72AlafsTer27	p.C72Afs*27	ENST00000245479	NM_000346.3	71	gtGTGCATCCGCGAGGCGGTCAGCCAGGTGCTCAAA/gt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	236	471	0	ENST00000269305.4:c.332T>A	p.Leu111Gln	p.L111Q	ENST00000269305	NM_001126112.2	111	cTg/cAg						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16264046	16264046	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1306	98	715	0	ENST00000375759.3:c.10416del	p.Leu3473CysfsTer18	p.L3473Cfs*18	ENST00000375759	NM_015001.2	3472	gTt/gt						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12044473	12044473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	31	410	0	ENST00000353533.5:c.1098del	p.Phe366LeufsTer3	p.F366Lfs*3	ENST00000353533	NM_003010.3	366	Ttt/tt						NEWRECORD																																																																									
MDM4	4194	MSKCC	GRCh37	1	204518445	204518445	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	22	489	2	ENST00000367182.3:c.1108G>T	p.Val370Phe	p.V370F	ENST00000367182	NM_001278516.1	370	Gtc/Ttc						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81332010	81332010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	18	515	0	ENST00000222390.5:c.2074G>T	p.Val692Phe	p.V692F	ENST00000222390	NM_000601.4	692	Gtt/Ttt						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81350061	81350061	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0009643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	20	408	0	ENST00000222390.5:c.1271G>C	p.Arg424Pro	p.R424P	ENST00000222390	NM_000601.4	424	cGt/cCt						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3779836	3779836	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	14	397	2	ENST00000262367.5:c.5212C>A	p.His1738Asn	p.H1738N	ENST00000262367	NM_004380.2	1738	Cat/Aat						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610498	10610498	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	22	385	0	ENST00000171111.5:c.212G>T	p.Arg71Leu	p.R71L	ENST00000171111	NM_203500.1	71	cGg/cTg						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11105568	11105568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	54	386	1	ENST00000344626.4:c.1484G>A	p.Gly495Asp	p.G495D	ENST00000344626	NM_003072.3	495	gGc/gAc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8339024	8339025	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0009643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	16	312	0	ENST00000356435.5:c.5276_5277delinsAG	p.Pro1759Gln	p.P1759Q	ENST00000356435		1759	cCA/cAG						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99204054	99204054	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs76257041		P-0007175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	96	434	0	ENST00000074304.5:c.2917G>A	p.Gly973Arg	p.G973R	ENST00000074304	NM_001134224.1	973	Gga/Aga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0007175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	292	663	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48573556	48573556	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	132	548	1	ENST00000342988.3:c.140T>A	p.Leu47Gln	p.L47Q	ENST00000342988	NM_005359.5	47	cTg/cAg						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15288868	15288868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	60	195	0	ENST00000263388.2:c.3871C>T	p.Arg1291Cys	p.R1291C	ENST00000263388	NM_000435.2	1291	Cgc/Tgc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0007582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	7212	88	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg						NEWRECORD																																																																									
MSH2	4436	MSKCC	GRCh37	2	47639661	47639661	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	134	151	0	ENST00000233146.2:c.754C>T	p.Gln252Ter	p.Q252*	ENST00000233146	NM_000251.2	252	Cag/Tag						NEWRECORD																																																																									
MST1R	4486	MSKCC	GRCh37	3	49934727	49934727	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	270	87	0	ENST00000296474.3:c.2169G>C	p.Glu723Asp	p.E723D	ENST00000296474	NM_002447.2	723	gaG/gaC						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87342702	87342702	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	123	144	0	ENST00000277120.3:c.987C>A	p.Tyr329Ter	p.Y329*	ENST00000277120		329	taC/taA						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46254716	46254908	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGCAGTCTTGTAAAAAGTAAATGGCAATTTTATTTGATATATAAAAGTATTCTTTGTTTTGGAATGCTTTTATATTTAAGTTTCTGTCATCTATAGTTGCATGAAAATTTTCCTTTAGAACCACTAACTTTAGCGAAACTACAAGAGTTATATTTATGATCCATTATGTGGACCTAAACTAAGAAATTTATA	TGGCAGTCTTGTAAAAAGTAAATGGCAATTTTATTTGATATATAAAAGTATTCTTTGTTTTGGAATGCTTTTATATTTAAGTTTCTGTCATCTATAGTTGCATGAAAATTTTCCTTTAGAACCACTAACTTTAGCGAAACTACAAGAGTTATATTTATGATCCATTATGTGGACCTAAACTAAGAAATTTATA	-			P-0007582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	141	235	0	ENST00000334344.6:c.4907_4922+177del		p.X1636_splice	ENST00000334344	NM_152641.2	1636							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	71	333	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1219409	1219409	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	62	270	0	ENST00000326873.7:c.461A>T	p.His154Leu	p.H154L	ENST00000326873	NM_000455.4	154	cAc/cTc						NEWRECORD																																																																									
NEGR1	257194	MSKCC	GRCh37	1	72076772	72076772	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1330	151	579	1	ENST00000357731.5:c.725T>A	p.Leu242Gln	p.L242Q	ENST00000357731	NM_173808.2	242	cTg/cAg						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162743316	162743316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	330	331	0	ENST00000367921.3:c.1786G>A	p.Asp596Asn	p.D596N	ENST00000367921	NM_006182.2	596	Gat/Aat						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52696255	52696255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1246	100	382	0	ENST00000394830.3:c.422G>T	p.Trp141Leu	p.W141L	ENST00000394830	NM_018313.4	141	tGg/tTg						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100998391	100998391	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	27	172	0	ENST00000325455.5:c.1411C>T	p.Gln471Ter	p.Q471*	ENST00000325455	NM_001202474.3	471	Cag/Tag						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10597373	10597373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	104	425	0	ENST00000171111.5:c.1830G>A	p.Met610Ile	p.M610I	ENST00000171111	NM_203500.1	610	atG/atA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587782082		P-0008074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	348	507	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67645032	67645032	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	375	537	0	ENST00000264010.4:c.297G>C	p.Gln99His	p.Q99H	ENST00000264010	NM_006565.3	99	caG/caC						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	371	401	0	ENST00000347630.2:c.393G>C	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgC						NEWRECORD																																																																									
FAM46C	54855	MSKCC	GRCh37	1	118165507	118165507	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	263	262	0	ENST00000369448.3:c.17G>C	p.Ser6Thr	p.S6T	ENST00000369448	NM_017709.3	6	aGc/aCc						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55372388	55372388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1437921769		P-0006692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	87	370	0	ENST00000297316.4:c.1078C>T	p.Arg360Cys	p.R360C	ENST00000297316	NM_022454.3	360	Cgc/Tgc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380305	25380305	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0006692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	339	346	0	ENST00000256078.4:c.153T>A	p.Cys51Ter	p.C51*	ENST00000256078	NM_033360.2	51	tgT/tgA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578252	7578299	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCTTCCACTCGGATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAA	TCCTTCCACTCGGATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAA	-			P-0006692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	341	489	2	ENST00000269305.4:c.560-10_597del		p.X187_splice	ENST00000269305	NM_001126112.2	187							NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151878816	151878816	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	838	504	0	ENST00000262189.6:c.6129del	p.Phe2043LeufsTer35	p.F2043Lfs*35	ENST00000262189	NM_170606.2	2043	ttT/tt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	58	627	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0006502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	31	654	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt						NEWRECORD																																																																									
REL	5966	MSKCC	GRCh37	2	61147583	61147583	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	17	114	0	ENST00000295025.8:c.988A>G	p.Thr330Ala	p.T330A	ENST00000295025	NM_002908.2	330	Acc/Gcc						NEWRECORD																																																																									
REL	5966	MSKCC	GRCh37	2	61147587	61147587	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	30	125	0	ENST00000295025.8:c.992T>C	p.Leu331Ser	p.L331S	ENST00000295025	NM_002908.2	331	tTg/tCg						NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35876449	35876449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2229232		P-0009117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			122	26	261	0	ENST00000303115.3:c.1241C>T	p.Thr414Met	p.T414M	ENST00000303115	NM_002185.3	414	aCg/aTg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0009117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	20	321	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42041734	42041734	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	62	697	1	ENST00000219905.7:c.5929C>T	p.Gln1977Ter	p.Q1977*	ENST00000219905	NM_001164273.1	1977	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	36	239	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5221084	5221084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	64	246	0	ENST00000357368.4:c.3382G>A	p.Val1128Ile	p.V1128I	ENST00000357368	NM_002850.3	1128	Gtc/Atc						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11132464	11132468	+	stop_gained	Nonsense_Mutation	ONP	ACGCA	ACGCA	TAGCT			P-0009117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	28	377	0	ENST00000344626.4:c.2680_2684delinsTAGCT	p.Thr894_Gln895delinsTer	p.T894_Q895delins*	ENST00000344626	NM_003072.3	894	ACGCAg/TAGCTg						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47030585	47030585	+	intron_variant	Intron	SNP	T	T	A			P-0009117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	17	214	0	ENST00000329236.7:c.201+1688T>A		p.*67*	ENST00000329236	NM_001204466.1								NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123217354	123217354	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	21	288	0	ENST00000218089.9:c.3008T>G	p.Leu1003Arg	p.L1003R	ENST00000218089	NM_001042749.1	1003	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577558	7577559	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0008653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	221	368	0	ENST00000269305.4:c.722_723delinsTT	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCC/tTT						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	141	340	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55955949	55955949	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	40	453	0	ENST00000263923.4:c.3213G>A	p.Trp1071Ter	p.W1071*	ENST00000263923	NM_002253.2	1071	tgG/tgA						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89478254	89478254	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0005527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	25	358	0	ENST00000336596.2:c.2075-2A>G		p.X692_splice	ENST00000336596	NM_005233.5	692							NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108214100	108214100	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0005527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	132	285	0	ENST00000278616.4:c.8418+2T>C		p.X2806_splice	ENST00000278616	NM_000051.3	2806							NEWRECORD																																																																									
PTPN11	5781	MSKCC	GRCh37	12	112884138	112884138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	38	330	0	ENST00000351677.2:c.73G>A	p.Val25Ile	p.V25I	ENST00000351677	NM_002834.3	25	Gtt/Att						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47041382	47041382	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	81	592	2	ENST00000329236.7:c.1492G>T	p.Glu498Ter	p.E498*	ENST00000329236	NM_001204466.1	498	Gag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0007654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	268	273	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	155	300	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0007654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	132	228	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa						NEWRECORD																																																																									
PIK3CD	5293	MSKCC	GRCh37	1	9784380	9784380	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	102	457	0	ENST00000377346.4:c.2765A>C	p.Lys922Thr	p.K922T	ENST00000377346	NM_005026.3	922	aAg/aCg						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212530147	212530147	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	190	369	0	ENST00000342788.4:c.1772A>G	p.Glu591Gly	p.E591G	ENST00000342788	NM_005235.2	591	gAa/gGa						NEWRECORD																																																																									
RHOA	387	MSKCC	GRCh37	3	49397704	49397704	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1088	313	432	0	ENST00000418115.1:c.520G>C	p.Ala174Pro	p.A174P	ENST00000418115	NM_001664.2	174	Gct/Cct						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142281762	142281762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	235	412	0	ENST00000350721.4:c.482G>A	p.Arg161Lys	p.R161K	ENST00000350721	NM_001184.3	161	aGa/aAa						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81350147	81350147	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	86	428	0	ENST00000222390.5:c.1185T>A	p.Asn395Lys	p.N395K	ENST00000222390	NM_000601.4	395	aaT/aaA						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57865461	57865461	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	166	619	0	ENST00000228682.2:c.2938A>G	p.Arg980Gly	p.R980G	ENST00000228682	NM_005269.2	980	Agg/Ggg						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28919686	28919686	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0007654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1160	72	315	0	ENST00000282397.4:c.2251A>C	p.Thr751Pro	p.T751P	ENST00000282397	NM_002019.4	751	Acc/Ccc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	81	341	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0006417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	73	370	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56448270	56448270	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0006417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	69	302	0	ENST00000407977.2:c.375+2T>C		p.X125_splice	ENST00000407977		125							NEWRECORD																																																																									
ERRFI1	54206	MSKCC	GRCh37	1	8073410	8073410	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2124	271	1143	0	ENST00000377482.5:c.1249A>G	p.Thr417Ala	p.T417A	ENST00000377482	NM_018948.3	417	Aca/Gca						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	309	411	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0006050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	52	502	1	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg						NEWRECORD																																																																									
PRDM1	639	MSKCC	GRCh37	6	106555074	106555074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	372	399	0	ENST00000369096.4:c.2191G>A	p.Glu731Lys	p.E731K	ENST00000369096	NM_001198.3	731	Gag/Aag						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128852242	128852242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140172891		P-0006050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	272	487	2	ENST00000249373.3:c.2314C>T	p.Arg772Cys	p.R772C	ENST00000249373	NM_005631.4	772	Cgc/Tgc						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81990331	81990331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	393	642	0	ENST00000359376.3:c.3602G>A	p.Arg1201His	p.R1201H	ENST00000359376	NM_002661.3	1201	cGc/cAc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0006028-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	119	383	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110435300	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-	rs765493638		P-0006028-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	15	106	0	ENST00000375856.3:c.3099_3101del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1033	ccACCg/ccg						NEWRECORD																																																																									
DCUN1D1	54165	MSKCC	GRCh37	3	182665060	182665060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006028-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1208	75	500	0	ENST00000292782.4:c.666G>T	p.Met222Ile	p.M222I	ENST00000292782	NM_020640.2	222	atG/atT						NEWRECORD																																																																									
ERCC2	2068	MSKCC	GRCh37	19	45860604	45860604	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006028-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1264	128	623	0	ENST00000391945.4:c.1403C>A	p.Pro468His	p.P468H	ENST00000391945	NM_000400.3	468	cCc/cAc						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66765497	66765497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006028-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	96	454	0	ENST00000374690.3:c.509C>T	p.Thr170Ile	p.T170I	ENST00000374690	NM_000044.3	170	aCt/aTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0009426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	86	239	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215646188	215646188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	59	172	0	ENST00000260947.4:c.410G>A	p.Gly137Glu	p.G137E	ENST00000260947	NM_000465.2	137	gGa/gAa						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55979609	55979609	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	55	300	0	ENST00000263923.4:c.838C>A	p.Gln280Lys	p.Q280K	ENST00000263923	NM_002253.2	280	Cag/Aag						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106158419	106158419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	60	194	0	ENST00000380013.4:c.3320C>A	p.Ser1107Ter	p.S1107*	ENST00000380013	NM_001127208.2	1107	tCa/tAa						NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	162683698	162683698	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	24	207	0	ENST00000366898.1:c.271G>C	p.Ala91Pro	p.A91P	ENST00000366898	NM_004562.2	91	Gcg/Ccg						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145742501	145742501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	22	182	0	ENST00000428558.2:c.287G>A	p.Arg96Gln	p.R96Q	ENST00000428558	NM_004260.3	96	cGg/cAg						NEWRECORD																																																																									
NKX2-1	7080	MSKCC	GRCh37	14	36986866	36986866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			19	40	57	0	ENST00000354822.5:c.823C>A	p.Pro275Thr	p.P275T	ENST00000354822	NM_001079668.2	275	Ccg/Acg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1219414	1219414	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0009426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			60	33	149	0	ENST00000326873.7:c.464+2T>A		p.X155_splice	ENST00000326873	NM_000455.4	155							NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10599874	10599874	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	59	276	0	ENST00000171111.5:c.1702G>T	p.Val568Phe	p.V568F	ENST00000171111	NM_203500.1	568	Gtc/Ttc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40899091	40899091	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0009426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	18	296	0	ENST00000373198.4:c.2179C>A	p.Pro727Thr	p.P727T	ENST00000373198	NM_133170.3	727	Cca/Aca						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123227920	123227920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	19	327	0	ENST00000218089.9:c.3631G>A	p.Val1211Ile	p.V1211I	ENST00000218089	NM_001042749.1	1211	Gtt/Att						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0006978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	95	229	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0006978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	155	296	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180039610	180039610	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs202140363		P-0006978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	125	342	1	ENST00000261937.6:c.3433C>T	p.Arg1145Cys	p.R1145C	ENST00000261937	NM_182925.4	1145	Cgc/Tgc						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104893810		P-0006978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	329	320	0	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25497874	25497874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	86	363	0	ENST00000264709.3:c.575C>T	p.Ala192Val	p.A192V	ENST00000264709	NM_175629.2	192	gCg/gTg						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134851891	134851891	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	106	263	1	ENST00000398015.3:c.1297G>A	p.Ala433Thr	p.A433T	ENST00000398015	NM_004441.4	433	Gcc/Acc						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55980321	55980321	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	52	443	0	ENST00000263923.4:c.770A>C	p.Asp257Ala	p.D257A	ENST00000263923	NM_002253.2	257	gAc/gCc						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66361249	66361249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	73	299	0	ENST00000273854.3:c.923G>A	p.Gly308Glu	p.G308E	ENST00000273854	NM_004439.5	308	gGg/gAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174466	112174466	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	112	358	0	ENST00000257430.4:c.3175G>T	p.Glu1059Ter	p.E1059*	ENST00000257430	NM_000038.5	1059	Gaa/Taa						NEWRECORD																																																																									
FGFR1	2260	MSKCC	GRCh37	8	38279362	38279362	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	69	531	1	ENST00000425967.3:c.1127A>C	p.Asn376Thr	p.N376T	ENST00000425967	NM_001174067.1	376	aAc/aCc						NEWRECORD																																																																									
MRE11A	4361	MSKCC	GRCh37	11	94204764	94204764	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	44	308	0	ENST00000323929.3:c.821T>C	p.Leu274Pro	p.L274P	ENST00000323929	NM_005591.3	274	cTt/cCt						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0006978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	209	456	0	ENST00000329236.7:c.1459+1G>C		p.X487_splice	ENST00000329236	NM_001204466.1	487							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1154	128	595	0	ENST00000269305.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000269305	NM_001126112.2	273	Cgt/Agt						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25470497	25470497	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	85	402	0	ENST00000264709.3:c.977G>C	p.Arg326Pro	p.R326P	ENST00000264709	NM_175629.2	326	cGc/cCc						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212251859	212251859	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	44	261	0	ENST00000342788.4:c.3200G>C	p.Arg1067Pro	p.R1067P	ENST00000342788	NM_005235.2	1067	cGa/cCa						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	93967210	93967210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	52	538	2	ENST00000369303.4:c.2142G>T	p.Met714Ile	p.M714I	ENST00000369303	NM_004440.3	714	atG/atT						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974677	21974677	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1057519882		P-0008915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	126	512	0	ENST00000304494.5:c.150G>T	p.Gln50His	p.Q50H	ENST00000304494	NM_000077.4	50	caG/caT						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43620429	43620429	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0008915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	53	318	0	ENST00000355710.3:c.3038G>C	p.Arg1013Thr	p.R1013T	ENST00000355710	NM_020975.4	1013	aGa/aCa						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108139160	108139160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	51	461	0	ENST00000278616.4:c.2662G>A	p.Glu888Lys	p.E888K	ENST00000278616	NM_000051.3	888	Gaa/Aaa						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41226371	41226371	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1101	93	630	0	ENST00000357654.3:c.4652C>G	p.Ser1551Cys	p.S1551C	ENST00000357654	NM_007294.3	1551	tCt/tGt						NEWRECORD																																																																									
SRSF2	6427	MSKCC	GRCh37	17	74732266	74732269	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	TTT			P-0008915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1498	119	748	0	ENST00000359995.5:c.640_643delinsAAA	p.Glu214LysfsTer18	p.E214Kfs*18	ENST00000359995	NM_001195427.1	214	GAAGag/AAAag						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238758086		P-0009762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	104	543	1	ENST00000358026.2:c.2729C>T	p.Thr910Met	p.T910M	ENST00000358026	NM_001128849.1	910	aCg/aTg						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2191170	2191170	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	314	694	2	ENST00000398665.3:c.424G>T	p.Asp142Tyr	p.D142Y	ENST00000398665	NM_032482.2	142	Gac/Tac						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8486130	8486130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	112	544	0	ENST00000356435.5:c.2687C>T	p.Ser896Leu	p.S896L	ENST00000356435		896	tCa/tTa						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108172518	108172518	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0009762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	126	325	0	ENST00000278616.4:c.5319+2T>G		p.X1773_splice	ENST00000278616	NM_000051.3	1773							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380285	25380285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	192	435	1	ENST00000256078.4:c.173C>T	p.Thr58Ile	p.T58I	ENST00000256078	NM_033360.2	58	aCa/aTa						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11123691	11123691	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	56	496	0	ENST00000344626.4:c.2341A>T	p.Met781Leu	p.M781L	ENST00000344626	NM_003072.3	781	Atg/Ttg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207029	1207029	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	171	362	0	ENST00000326873.7:c.118del	p.Arg40AlafsTer11	p.R40Afs*11	ENST00000326873	NM_000455.4	39	cgC/cg						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602692	10602692	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	180	513	0	ENST00000171111.5:c.886del	p.Arg296AlafsTer21	p.R296Afs*21	ENST00000171111	NM_203500.1	296	Cgc/gc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006440-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	95	612	0	ENST00000269305.4:c.712T>G	p.Cys238Gly	p.C238G	ENST00000269305	NM_001126112.2	238	Tgt/Ggt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0006881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	36	273	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0005103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	337	755	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0005103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	89	598	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173656	112173656	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	132	540	0	ENST00000257430.4:c.2365C>T	p.Gln789Ter	p.Q789*	ENST00000257430	NM_000038.5	789	Cag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0005103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	432	490	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
MST1R	4486	MSKCC	GRCh37	3	49927985	49927985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	368	939	2	ENST00000296474.3:c.3743G>A	p.Arg1248His	p.R1248H	ENST00000296474	NM_002447.2	1248	cGc/cAc						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30675555	30675555	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	368	870	0	ENST00000376406.3:c.2801A>G	p.Glu934Gly	p.E934G	ENST00000376406	NM_014641.2	934	gAa/gGa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0007887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	136	353	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0007887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	138	433	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604736	48604736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	253	419	0	ENST00000342988.3:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000342988	NM_005359.5	520	Gaa/Taa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0007887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	145	205	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142284970	142284970	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	73	428	0	ENST00000350721.4:c.285T>A	p.Ser95Arg	p.S95R	ENST00000350721	NM_001184.3	95	agT/agA						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189526167	189526167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	170	402	0	ENST00000264731.3:c.431C>T	p.Thr144Met	p.T144M	ENST00000264731	NM_003722.4	144	aCg/aTg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49434463	49434463	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	105	325	0	ENST00000301067.7:c.7090A>C	p.Ser2364Arg	p.S2364R	ENST00000301067	NM_003482.3	2364	Agt/Cgt						NEWRECORD																																																																									
MALT1	10892	MSKCC	GRCh37	18	56411570	56411570	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0007887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	199	494	0	ENST00000348428.3:c.1754A>G	p.Glu585Gly	p.E585G	ENST00000348428	NM_006785.3	585	gAa/gGa						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5286129	5286129	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	89	386	0	ENST00000357368.4:c.23G>C	p.Gly8Ala	p.G8A	ENST00000357368	NM_002850.3	8	gGc/gCc						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7172340	7172340	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181150880		P-0007887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	142	479	0	ENST00000302850.5:c.1229G>A	p.Arg410Gln	p.R410Q	ENST00000302850	NM_000208.2	410	cGg/cAg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0009164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	92	397	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	95	246	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	214	409	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	43	219	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0009862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	120	451	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11169724	11169724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	103	491	0	ENST00000361445.4:c.7429G>A	p.Glu2477Lys	p.E2477K	ENST00000361445	NM_004958.3	2477	Gaa/Aaa						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226570852	226570852	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	53	232	0	ENST00000366794.5:c.1044G>C	p.Leu348Phe	p.L348F	ENST00000366794	NM_001618.3	348	ttG/ttC						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157099261	157099261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	41	425	0	ENST00000346085.5:c.198C>A	p.Asn66Lys	p.N66K	ENST00000346085	NM_020732.3	66	aaC/aaA						NEWRECORD																																																																									
YAP1	10413	MSKCC	GRCh37	11	101984948	101984948	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	51	186	0	ENST00000282441.5:c.395T>G	p.Leu132Arg	p.L132R	ENST00000282441	NM_001130145.2	132	cTg/cGg						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46231458	46231458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	199	431	0	ENST00000334344.6:c.1298G>T	p.Cys433Phe	p.C433F	ENST00000334344	NM_152641.2	433	tGc/tTc						NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103506135	103506135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	77	348	4	ENST00000355739.4:c.293C>T	p.Ala98Val	p.A98V	ENST00000355739	NM_000123.3	98	gCg/gTg						NEWRECORD																																																																									
DNAJB1	3337	MSKCC	GRCh37	19	14628954	14628954	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	105	529	0	ENST00000254322.2:c.208G>C	p.Glu70Gln	p.E70Q	ENST00000254322	NM_006145.1	70	Gaa/Caa						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47165101	47165111	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAATTTTAA	GAAAATTTTAA	-			P-0009862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	165	362	0	ENST00000409792.3:c.1015_1025del	p.Leu339SerfsTer4	p.L339Sfs*4	ENST00000409792	NM_014159.6	339	TTAAAATTTTCa/a						NEWRECORD																																																																									
TSHR	7253	MSKCC	GRCh37	14	81606120	81606120	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	122	575	0	ENST00000298171.2:c.791del	p.Pro264HisfsTer4	p.P264Hfs*4	ENST00000298171	NM_000369.2	264	Cca/ca						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	37	383	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0008753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	475	538	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70118951	70118951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	185	800	0	ENST00000245479.2:c.523C>T	p.Gln175Ter	p.Q175*	ENST00000245479	NM_000346.3	175	Cag/Tag						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266090	41266253	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTA	TTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTA	-			P-0008753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	260	664	0	ENST00000349496.5:c.90_241+12del		p.X30_splice	ENST00000349496	NM_001904.3	30							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	299	327	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	108	283	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66189835	66189835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	240	429	0	ENST00000273854.3:c.3111G>T	p.Leu1037Phe	p.L1037F	ENST00000273854	NM_004439.5	1037	ttG/ttT						NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14029051	14029051	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	96	261	0	ENST00000311895.7:c.1262G>C	p.Arg421Thr	p.R421T	ENST00000311895	NM_005236.2	421	aGa/aCa						NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36937951	36937951	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1238	173	467	0	ENST00000361632.4:c.885C>G	p.Cys295Trp	p.C295W	ENST00000361632		295	tgC/tgG						NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36939207	36939207	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1368	167	466	0	ENST00000361632.4:c.502C>T	p.Gln168Ter	p.Q168*	ENST00000361632		168	Cag/Tag						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156830856	156830856	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	157	260	0	ENST00000524377.1:c.130G>T	p.Gly44Cys	p.G44C	ENST00000524377	NM_002529.3	44	Ggc/Tgc						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212248749	212248749	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	166	247	0	ENST00000342788.4:c.3518C>G	p.Ser1173Cys	p.S1173C	ENST00000342788	NM_005235.2	1173	tCt/tGt						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212989584	212989584	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	239	374	0	ENST00000342788.4:c.127G>T	p.Glu43Ter	p.E43*	ENST00000342788	NM_005235.2	43	Gaa/Taa						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89462411	89462411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	49	236	1	ENST00000336596.2:c.1883G>A	p.Gly628Glu	p.G628E	ENST00000336596	NM_005233.5	628	gGa/gAa						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189612254	189612254	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	83	258	0	ENST00000264731.3:c.2006G>C	p.Arg669Pro	p.R669P	ENST00000264731	NM_003722.4	669	cGc/cCc						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150016357	150016357	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	215	281	1	ENST00000253339.5:c.349G>T	p.Asp117Tyr	p.D117Y	ENST00000253339		117	Gat/Tat						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508841	106508841	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	354	318	0	ENST00000359195.3:c.835G>T	p.Glu279Ter	p.E279*	ENST00000359195	NM_002649.2	279	Gag/Tag						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128829000	128829000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			55	26	29	0	ENST00000249373.3:c.8C>A	p.Ala3Asp	p.A3D	ENST00000249373	NM_005631.4	3	gCt/gAt						NEWRECORD																																																																									
NKX3-1	4824	MSKCC	GRCh37	8	23539108	23539108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	380	422	1	ENST00000380871.4:c.331G>T	p.Gly111Cys	p.G111C	ENST00000380871	NM_006167.3	111	Ggc/Tgc						NEWRECORD																																																																									
FGFR1	2260	MSKCC	GRCh37	8	38287372	38287372	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	111	350	0	ENST00000425967.3:c.285G>C	p.Gln95His	p.Q95H	ENST00000425967	NM_001174067.1	95	caG/caC						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8331600	8331600	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	508	465	0	ENST00000356435.5:c.5516C>G	p.Pro1839Arg	p.P1839R	ENST00000356435		1839	cCc/cGc						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101891137	101891137	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	256	336	0	ENST00000374994.4:c.98C>T	p.Ala33Val	p.A33V	ENST00000374994	NM_004612.2	33	gCg/gTg						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18524244	18524244	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	199	371	0	ENST00000266497.5:c.1756G>A	p.Glu586Lys	p.E586K	ENST00000266497		586	Gaa/Aaa						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18524246	18524246	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	187	368	3	ENST00000266497.5:c.1757+1G>T		p.X586_splice	ENST00000266497		586							NEWRECORD																																																																									
NFKBIA	4792	MSKCC	GRCh37	14	35873653	35873653	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	94	381	0	ENST00000216797.5:c.198G>C	p.Trp66Cys	p.W66C	ENST00000216797	NM_020529.2	66	tgG/tgC						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88472420	88472420	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	139	299	0	ENST00000360948.2:c.2133+2T>A		p.X711_splice	ENST00000360948	NM_001012338.2	711							NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29585438	29585438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	90	336	1	ENST00000358273.4:c.4250C>T	p.Ala1417Val	p.A1417V	ENST00000358273	NM_001042492.2	1417	gCc/gTc						NEWRECORD																																																																									
RPTOR	57521	MSKCC	GRCh37	17	78923309	78923309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	138	361	0	ENST00000306801.3:c.3332C>T	p.Ala1111Val	p.A1111V	ENST00000306801	NM_020761.2	1111	gCg/gTg						NEWRECORD																																																																									
BCL2	596	MSKCC	GRCh37	18	60795994	60795994	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	81	284	0	ENST00000333681.4:c.586-2A>C		p.X196_splice	ENST00000333681		196							NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2226416	2226416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	83	359	0	ENST00000398665.3:c.3896C>T	p.Ser1299Phe	p.S1299F	ENST00000398665	NM_032482.2	1299	tCc/tTc						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7142878	7142878	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	332	337	1	ENST00000302850.5:c.2491G>T	p.Glu831Ter	p.E831*	ENST00000302850	NM_000208.2	831	Gag/Tag						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602374	10602374	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	417	446	0	ENST00000171111.5:c.1204C>T	p.Gln402Ter	p.Q402*	ENST00000171111	NM_203500.1	402	Cag/Tag						NEWRECORD																																																																									
TOP1	7150	MSKCC	GRCh37	20	39750381	39750381	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1219	112	355	0	ENST00000361337.2:c.1996A>G	p.Lys666Glu	p.K666E	ENST00000361337	NM_003286.2	666	Aaa/Gaa						NEWRECORD																																																																									
TMPRSS2	7113	MSKCC	GRCh37	21	42852417	42852417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	229	330	0	ENST00000398585.3:c.669G>T	p.Arg223Ser	p.R223S	ENST00000398585	NM_001135099.1	223	agG/agT						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63411331	63411331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	288	210	0	ENST00000330258.3:c.1836G>T	p.Glu612Asp	p.E612D	ENST00000330258	NM_152424.3	612	gaG/gaT						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18715664	18715664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	291	332	0	ENST00000266497.5:c.3497del	p.Pro1166LeufsTer4	p.P1166Lfs*4	ENST00000266497		1165	ttC/tt						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46243899	46243900	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	340	401	0	ENST00000334344.6:c.1996_1997del	p.Gln666AsnfsTer40	p.Q666Nfs*40	ENST00000334344	NM_152641.2	665	ACa/a						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40713382	40713383	+	missense_variant	Missense_Mutation	DNP	CG	CG	GA			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1170	197	359	0	ENST00000373198.4:c.4132_4133delinsTC	p.Arg1378Ser	p.R1378S	ENST00000373198	NM_133170.3	1378	CGa/TCa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	59	431	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0007635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	81	535	1	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48586262	48586262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	44	396	0	ENST00000342988.3:c.931C>T	p.Gln311Ter	p.Q311*	ENST00000342988	NM_005359.5	311	Cag/Tag						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56437511	56437511	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0007635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	47	314	0	ENST00000407977.2:c.951del	p.Glu318ArgfsTer101	p.E318Rfs*101	ENST00000407977		317	acA/ac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	118	376	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0004789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	127	375	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0004789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	128	284	1	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48951101	48951171	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TATAGGATACATCTTTAAAGAGAAATTTGCTAAAGCTGTGGGACAGGGTTGTGTCGAAATTGGATCACAGG	TATAGGATACATCTTTAAAGAGAAATTTGCTAAAGCTGTGGGACAGGGTTGTGTCGAAATTGGATCACAGG	-			P-0004789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	174	368	0	ENST00000267163.4:c.1265_1332+3del		p.X422_splice	ENST00000267163	NM_000321.2	422							NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106253	27106271	+	frameshift_variant	Frame_Shift_Del	DEL	TAGAGGACGAACCCCACAG	TAGAGGACGAACCCCACAG	-			P-0004789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	130	398	1	ENST00000324856.7:c.5866_5884del	p.Glu1956ArgfsTer53	p.E1956Rfs*53	ENST00000324856	NM_006015.4	1955	cTAGAGGACGAACCCCACAGt/ct						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	179	426	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42788861	42788861	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	122	376	1	ENST00000575354.2:c.5A>G	p.Tyr2Cys	p.Y2C	ENST00000575354	NM_015125.3	2	tAt/tGt						NEWRECORD																																																																									
ALOX12B	242	MSKCC	GRCh37	17	7989483	7989483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	50	313	1	ENST00000319144.4:c.203G>A	p.Arg68His	p.R68H	ENST00000319144	NM_001139.2	68	cGc/cAc						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187628521	187628521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	84	481	1	ENST00000441802.2:c.2461G>T	p.Glu821Ter	p.E821*	ENST00000441802	NM_005245.3	821	Gag/Tag						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198265050	198265050	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	115	264	0	ENST00000335508.6:c.2827A>G	p.Lys943Glu	p.K943E	ENST00000335508	NM_012433.2	943	Aaa/Gaa						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215661784	215661784	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1149	128	491	0	ENST00000260947.4:c.215+1G>T		p.X72_splice	ENST00000260947	NM_000465.2	72							NEWRECORD																																																																									
PIK3CB	5291	MSKCC	GRCh37	3	138407716	138407716	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	138	313	0	ENST00000289153.2:c.2136+1G>T		p.X712_splice	ENST00000289153	NM_006219.2	712							NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187532683	187532683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	69	416	0	ENST00000441802.2:c.9710C>A	p.Ala3237Asp	p.A3237D	ENST00000441802	NM_005245.3	3237	gCc/gAc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151874572	151874572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	52	288	0	ENST00000262189.6:c.7966G>A	p.Glu2656Lys	p.E2656K	ENST00000262189	NM_170606.2	2656	Gaa/Aaa						NEWRECORD																																																																									
KLF4	9314	MSKCC	GRCh37	9	110249877	110249877	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	41	158	0	ENST00000374672.4:c.798C>A	p.Tyr266Ter	p.Y266*	ENST00000374672	NM_004235.4	266	taC/taA						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70405892	70405892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1199	174	576	0	ENST00000373644.4:c.3406G>T	p.Gly1136Cys	p.G1136C	ENST00000373644	NM_030625.2	1136	Ggt/Tgt						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100996801	100996801	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1914	217	770	1	ENST00000325455.5:c.1726G>T	p.Gly576Cys	p.G576C	ENST00000325455	NM_001202474.3	576	Ggc/Tgc						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21620033	21620033	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1238	67	535	0	ENST00000382592.4:c.133A>G	p.Thr45Ala	p.T45A	ENST00000382592	NM_014572.2	45	Act/Gct						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32936725	32936725	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	70	380	0	ENST00000380152.3:c.7871A>G	p.Tyr2624Cys	p.Y2624C	ENST00000380152		2624	tAt/tGt						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49030410	49030410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	62	293	0	ENST00000267163.4:c.1885G>A	p.Glu629Lys	p.E629K	ENST00000267163	NM_000321.2	629	Gag/Aag						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857223	9857223	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1440	121	613	0	ENST00000330684.3:c.4178C>A	p.Ser1393Tyr	p.S1393Y	ENST00000330684	NM_001134407.1	1393	tCc/tAc						NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56782278	56782278	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1597	118	628	2	ENST00000308159.5:c.119G>C	p.Gly40Ala	p.G40A	ENST00000308159	NM_014669.4	40	gGa/gCa						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15942965	15942965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	53	329	1	ENST00000268712.3:c.6737C>T	p.Ser2246Leu	p.S2246L	ENST00000268712	NM_006311.3	2246	tCa/tTa						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2216421	2216421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	96	339	2	ENST00000398665.3:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000398665	NM_032482.2	689	Cgg/Tgg						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9561186	9561186	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1125	73	416	0	ENST00000353224.5:c.596A>T	p.Tyr199Phe	p.Y199F	ENST00000353224	NM_177990.2	199	tAt/tTt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600016	10600024	+	stop_gained	Nonsense_Mutation	ONP	ATAGATACA	ATAGATACA	CTAGACACC			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	101	313	0	ENST00000171111.5:c.1552_1560delinsGGTGTCTAG	p.Cys518_Tyr520delinsGlyValTer	p.C518_Y520delinsGV*	ENST00000171111	NM_203500.1	518	TGTATCTAT/GGTGTCTAG						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579716	7579716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	435	957	1	ENST00000269305.4:c.80delC	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	27	cCt/ct						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145737819	145737819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	133	572	0	ENST00000428558.2:c.3011G>A	p.Arg1004Gln	p.R1004Q	ENST00000428558	NM_004260.3	1004	cGg/cAg						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0006962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	82	454	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	109	407	0	ENST00000269305.4:c.517G>C	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ctg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0006564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	34	324	1	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114920447	114920447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	92	693	0	ENST00000543371.1:c.1388G>A	p.Cys463Tyr	p.C463Y	ENST00000543371	NM_001198531.1	463	tGc/tAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175755	112175755	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	116	284	0	ENST00000257430.4:c.4464del	p.Leu1488PhefsTer19	p.L1488Ffs*19	ENST00000257430	NM_000038.5	1488	ttA/tt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0006669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	238	298	1	ENST00000269305.4:c.365_366delTG	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157099835	157099835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	237	395	1	ENST00000346085.5:c.772C>T	p.Gln258Ter	p.Q258*	ENST00000346085	NM_020732.3	258	Caa/Taa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151845780	151845780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	305	396	0	ENST00000262189.6:c.13232G>A	p.Gly4411Glu	p.G4411E	ENST00000262189	NM_170606.2	4411	gGa/gAa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174467	112174471	+	frameshift_variant	Frame_Shift_Del	DEL	AAATA	AAATA	-			P-0006669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	239	332	0	ENST00000257430.4:c.3179_3183del	p.Ile1060ThrfsTer3	p.I1060Tfs*3	ENST00000257430	NM_000038.5	1059	gAAATA/g						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68845757	68845757	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	63	411	0	ENST00000261769.5:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000261769	NM_004360.3	335	Cga/Tga						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89259368	89259368	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1125	64	667	0	ENST00000336596.2:c.512T>C	p.Val171Ala	p.V171A	ENST00000336596	NM_005233.5	171	gTa/gCa						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7184495	7184495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	63	343	0	ENST00000302850.5:c.806C>T	p.Pro269Leu	p.P269L	ENST00000302850	NM_000208.2	269	cCg/cTg						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151873518	151873518	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	68	509	0	ENST00000262189.6:c.9020del	p.Gly3007GlufsTer25	p.G3007Efs*25	ENST00000262189	NM_170606.2	3007	gGa/ga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1140	57	412	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0009288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	73	393	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331							NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44966661	44966662	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0009288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	59	296	0	ENST00000377967.4:c.3886_3887del	p.Leu1296SerfsTer36	p.L1296Sfs*36	ENST00000377967	NM_021140.2	1295	tgTCtt/tgtt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782177		P-0005041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	31	662	1	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0005041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	20	547	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	81	407	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	51	373	0	ENST00000269305.4:c.472C>T	p.Arg158Cys	p.R158C	ENST00000269305	NM_001126112.2	158	Cgc/Tgc						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	93979371	93979371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1192	77	723	0	ENST00000369303.4:c.1457G>T	p.Arg486Met	p.R486M	ENST00000369303	NM_004440.3	486	aGg/aTg						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120509040	120509040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	85	440	0	ENST00000256646.2:c.1526G>A	p.Cys509Tyr	p.C509Y	ENST00000256646	NM_024408.3	509	tGt/tAt						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25470925	25470925	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	83	561	0	ENST00000264709.3:c.836A>T	p.Asp279Val	p.D279V	ENST00000264709	NM_175629.2	279	gAt/gTt						NEWRECORD																																																																									
MSH2	4436	MSKCC	GRCh37	2	47656912	47656912	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	55	428	0	ENST00000233146.2:c.1108G>T	p.Ala370Ser	p.A370S	ENST00000233146	NM_000251.2	370	Gca/Tca						NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209108284	209108284	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	70	514	0	ENST00000345146.2:c.565A>T	p.Ile189Phe	p.I189F	ENST00000345146	NM_005896.2	189	Att/Ttt						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47161717	47161717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1207	83	589	2	ENST00000409792.3:c.4409C>T	p.Pro1470Leu	p.P1470L	ENST00000409792	NM_014159.6	1470	cCa/cTa						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47164601	47164601	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	53	526	0	ENST00000409792.3:c.1525A>T	p.Lys509Ter	p.K509*	ENST00000409792	NM_014159.6	509	Aag/Tag						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86564452	86564452	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	68	462	0	ENST00000274376.6:c.184G>T	p.Gly62Cys	p.G62C	ENST00000274376	NM_002890.2	62	Ggt/Tgt						NEWRECORD																																																																									
HIST1H2BD	3017	MSKCC	GRCh37	6	26158719	26158719	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	21	144	0	ENST00000289316.2:c.322G>T	p.Ala108Ser	p.A108S	ENST00000289316	NM_138720.2	108	Gcc/Tcc						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106526727	106526727	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	49	329	0	ENST00000359195.3:c.3020A>G	p.Gln1007Arg	p.Q1007R	ENST00000359195	NM_002649.2	1007	cAg/cGg						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8100408	8100408	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1209	118	675	0	ENST00000346208.3:c.382G>T	p.Gly128Trp	p.G128W	ENST00000346208		128	Ggg/Tgg						NEWRECORD																																																																									
SMARCD1	6602	MSKCC	GRCh37	12	50490728	50490728	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	102	477	0	ENST00000394963.4:c.1365G>T	p.Trp455Cys	p.W455C	ENST00000394963	NM_003076.4	455	tgG/tgT						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88680714	88680714	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	61	565	0	ENST00000360948.2:c.543G>T	p.Lys181Asn	p.K181N	ENST00000360948	NM_001012338.2	181	aaG/aaT						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29576054	29576054	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1226	90	601	1	ENST00000358273.4:c.4027A>T	p.Thr1343Ser	p.T1343S	ENST00000358273	NM_001042492.2	1343	Act/Tct						NEWRECORD																																																																									
MAP2K2	5605	MSKCC	GRCh37	19	4094482	4094482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	53	455	1	ENST00000262948.5:c.1061C>T	p.Pro354Leu	p.P354L	ENST00000262948	NM_030662.3	354	cCa/cTa						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139400147	139400148	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	70	540	0	ENST00000277541.6:c.4200_4201delinsTT	p.Gln1400_Gly1401delinsHisTrp	p.Q1400_G1401delinsHW	ENST00000277541	NM_017617.3	1400	caGGgg/caTTgg						NEWRECORD																																																																									
HRAS	3265	MSKCC	GRCh37	11	533765	533765	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0009369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1217	443	697	0	ENST00000311189.7:c.290+1G>T		p.X97_splice	ENST00000311189		97							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0008374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	37	369	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	47	367	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc						NEWRECORD																																																																									
MLH1	4292	MSKCC	GRCh37	3	37059036	37059036	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	42	404	0	ENST00000231790.2:c.830A>T	p.Glu277Val	p.E277V	ENST00000231790	NM_000249.3	277	gAa/gTa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	456	383	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0007511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	166	338	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753660142		P-0007511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	330	452	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	138	306	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga						NEWRECORD																																																																									
RPTOR	57521	MSKCC	GRCh37	17	78796958	78796958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	54	349	0	ENST00000306801.3:c.1071G>A	p.Met357Ile	p.M357I	ENST00000306801	NM_020761.2	357	atG/atA						NEWRECORD																																																																									
MPL	4352	MSKCC	GRCh37	1	43804266	43804266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	133	427	0	ENST00000372470.3:c.266C>A	p.Thr89Asn	p.T89N	ENST00000372470	NM_005373.2	89	aCc/aAc						NEWRECORD																																																																									
FOXP1	27086	MSKCC	GRCh37	3	71101737	71101737	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	197	486	0	ENST00000318789.4:c.461T>A	p.Leu154Ter	p.L154*	ENST00000318789	NM_032682.5	154	tTg/tAg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40733355	40733355	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	217	192	0	ENST00000373198.4:c.3451C>T	p.Gln1151Ter	p.Q1151*	ENST00000373198	NM_133170.3	1151	Caa/Taa						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76938947	76938947	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	536	676	1	ENST00000373344.5:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000373344	NM_000489.3	601	Aaa/Gaa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175622	112175622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	271	503	0	ENST00000257430.4:c.4333del	p.Thr1445GlnfsTer28	p.T1445Qfs*28	ENST00000257430	NM_000038.5	1444	cAa/ca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578397	7578397	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	29	231	0	ENST00000269305.4:c.533del	p.His178ProfsTer69	p.H178Pfs*69	ENST00000269305	NM_001126112.2	178	cAc/cc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	658	350	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
ERCC2	2068	MSKCC	GRCh37	19	45864886	45864886	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200043231		P-0009274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	212	415	0	ENST00000391945.4:c.1133G>A	p.Arg378His	p.R378H	ENST00000391945	NM_000400.3	378	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112170772	112170772	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765557332		P-0009274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1015	265	421	0	ENST00000257430.4:c.1868G>A	p.Arg623Gln	p.R623Q	ENST00000257430	NM_000038.5	623	cGg/cAg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40747127	40747127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	192	303	1	ENST00000373198.4:c.2955G>T	p.Glu985Asp	p.E985D	ENST00000373198	NM_133170.3	985	gaG/gaT						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173968	112173968	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	227	333	1	ENST00000257430.4:c.2677G>T	p.Glu893Ter	p.E893*	ENST00000257430	NM_000038.5	893	Gaa/Taa						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221995	1221995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	455	593	1	ENST00000326873.7:c.910C>T	p.Arg304Trp	p.R304W	ENST00000326873	NM_000455.4	304	Cgg/Tgg						NEWRECORD																																																																									
SDHA	6389	MSKCC	GRCh37	5	235442	235442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	309	414	0	ENST00000264932.6:c.1248C>A	p.Asn416Lys	p.N416K	ENST00000264932	NM_004168.2	416	aaC/aaA						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37876039	37876039	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0006084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	472	595	0	ENST00000269571.5:c.1899-1G>T		p.X633_splice	ENST00000269571		633							NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11144059	11144059	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	544	623	1	ENST00000344626.4:c.3640A>T	p.Ile1214Phe	p.I1214F	ENST00000344626	NM_003072.3	1214	Atc/Ttc						NEWRECORD																																																																									
NKX2-1	7080	MSKCC	GRCh37	14	36986863	36986872	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGGCACCC	GCGGGCACCC	-			P-0006084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	149	120	0	ENST00000354822.5:c.817_826del	p.Gly273SerfsTer19	p.G273Sfs*19	ENST00000354822	NM_001079668.2	273	GGGTGCCCGCag/ag						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098980	178098982	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0006084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	128	229	0	ENST00000397062.3:c.63_65del	p.Asp21_Ile22delinsGlu	p.D21_I22delinsE	ENST00000397062	NM_006164.4	21	gaCATa/gaa						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65309819	65309819	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1519	184	455	0	ENST00000342505.4:c.2331G>C	p.Trp777Cys	p.W777C	ENST00000342505	NM_002227.2	777	tgG/tgC						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47163494	47163494	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	282	433	0	ENST00000409792.3:c.2632G>T	p.Gly878Cys	p.G878C	ENST00000409792	NM_014159.6	878	Ggt/Tgt						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89457260	89457260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	85	450	0	ENST00000336596.2:c.1741C>T	p.Leu581Phe	p.L581F	ENST00000336596	NM_005233.5	581	Ctt/Ttt						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89528647	89528647	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	205	362	0	ENST00000336596.2:c.2947G>T	p.Val983Leu	p.V983L	ENST00000336596	NM_005233.5	983	Gtg/Ttg						NEWRECORD																																																																									
FAM175A	84142	MSKCC	GRCh37	4	84391537	84391537	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	63	226	0	ENST00000321945.7:c.295T>C	p.Trp99Arg	p.W99R	ENST00000321945	NM_139076.2	99	Tgg/Cgg						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117687360	117687360	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	70	541	0	ENST00000368508.3:c.2691G>C	p.Trp897Cys	p.W897C	ENST00000368508	NM_002944.2	897	tgG/tgC						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8528780	8528780	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	90	352	0	ENST00000356435.5:c.353-1G>C		p.X118_splice	ENST00000356435		118							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	2715	514	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115120954	115120954	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	1018	401	0	ENST00000257566.3:c.52C>A	p.His18Asn	p.H18N	ENST00000257566	NM_016569.3	18	Cat/Aat						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061520	38061520	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1445	183	291	1	ENST00000250448.2:c.469G>T	p.Gly157Cys	p.G157C	ENST00000250448	NM_004496.3	157	Ggc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753660142		P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	1055	574	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11094931	11094931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1793	239	496	0	ENST00000344626.4:c.104C>T	p.Ser35Leu	p.S35L	ENST00000344626	NM_003072.3	35	tCg/tTg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41408893	41408893	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1376	675	512	0	ENST00000373198.4:c.533C>A	p.Ala178Asp	p.A178D	ENST00000373198	NM_133170.3	178	gCc/gAc						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44929232	44929232	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	341	379	0	ENST00000377967.4:c.2332C>A	p.Pro778Thr	p.P778T	ENST00000377967	NM_021140.2	778	Cct/Act						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44929551	44929551	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	251	317	0	ENST00000377967.4:c.2651C>G	p.Ser884Ter	p.S884*	ENST00000377967	NM_021140.2	884	tCa/tGa						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47041636	47041636	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	888	260	0	ENST00000329236.7:c.1627C>T	p.Gln543Ter	p.Q543*	ENST00000329236	NM_001204466.1	543	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0009056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1243	82	430	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52623167	52623167	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	331	471	4	ENST00000394830.3:c.2884G>T	p.Asp962Tyr	p.D962Y	ENST00000394830	NM_018313.4	962	Gat/Tat						NEWRECORD																																																																									
HIST1H3B	8358	MSKCC	GRCh37	6	26032031	26032031	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	603	1020	0	ENST00000244661.2:c.258G>C	p.Gln86His	p.Q86H	ENST00000244661	NM_003537.3	86	caG/caC						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16258715	16258715	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	368	543	0	ENST00000375759.3:c.5980G>T	p.Gly1994Ter	p.G1994*	ENST00000375759	NM_015001.2	1994	Gga/Tga						NEWRECORD																																																																									
IKBKE	9641	MSKCC	GRCh37	1	206666622	206666622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	343	506	0	ENST00000367120.3:c.1956G>T	p.Gln652His	p.Q652H	ENST00000367120	NM_014002.3	652	caG/caT						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47161801	47161801	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	410	509	0	ENST00000409792.3:c.4325C>A	p.Ser1442Ter	p.S1442*	ENST00000409792	NM_014159.6	1442	tCa/tAa						NEWRECORD																																																																									
GSK3B	2932	MSKCC	GRCh37	3	119720978	119720978	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	300	461	0	ENST00000316626.5:c.197C>A	p.Ser66Ter	p.S66*	ENST00000316626		66	tCa/tAa						NEWRECORD																																																																									
TRAF2	7186	MSKCC	GRCh37	9	139814883	139814883	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1176	605	849	1	ENST00000247668.2:c.876G>T	p.Glu292Asp	p.E292D	ENST00000247668	NM_021138.3	292	gaG/gaT						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717661	89717661	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	231	362	0	ENST00000371953.3:c.686C>A	p.Ser229Ter	p.S229*	ENST00000371953	NM_000314.4	229	tCa/tAa						NEWRECORD																																																																									
FGF19	9965	MSKCC	GRCh37	11	69514107	69514107	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	404	504	1	ENST00000294312.3:c.574C>A	p.Leu192Met	p.L192M	ENST00000294312	NM_005117.2	192	Ctg/Atg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108190748	108190748	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	163	326	0	ENST00000278616.4:c.6415G>T	p.Glu2139Ter	p.E2139*	ENST00000278616	NM_000051.3	2139	Gaa/Taa						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32914094	32914094	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	346	756	0	ENST00000380152.3:c.5602G>T	p.Asp1868Tyr	p.D1868Y	ENST00000380152		1868	Gac/Tac						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110434817	110434817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	259	438	0	ENST00000375856.3:c.3584G>A	p.Gly1195Glu	p.G1195E	ENST00000375856	NM_003749.2	1195	gGa/gAa						NEWRECORD																																																																									
CD276	80381	MSKCC	GRCh37	15	73994824	73994824	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	156	176	0	ENST00000318443.5:c.308G>T	p.Gly103Val	p.G103V	ENST00000318443	NM_001024736.1	103	gGc/gTc						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	354348	354348	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	324	427	1	ENST00000262320.3:c.1210G>T	p.Glu404Ter	p.E404*	ENST00000262320	NM_003502.3	404	Gag/Tag						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68842438	68842438	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	310	461	0	ENST00000261769.5:c.499G>T	p.Glu167Ter	p.E167*	ENST00000261769	NM_004360.3	167	Gaa/Taa						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81960731	81960731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	571	646	1	ENST00000359376.3:c.2462C>A	p.Ser821Tyr	p.S821Y	ENST00000359376	NM_002661.3	821	tCc/tAc						NEWRECORD																																																																									
AURKB	9212	MSKCC	GRCh37	17	8108203	8108203	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	393	566	2	ENST00000585124.1:c.1021C>A	p.Gln341Lys	p.Q341K	ENST00000585124	NM_004217.3	341	Caa/Aaa						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63533489	63533489	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	300	412	0	ENST00000307078.5:c.1665C>A	p.Cys555Ter	p.C555*	ENST00000307078	NM_004655.3	555	tgC/tgA						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604775	48604775	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	330	396	1	ENST00000342988.3:c.1597C>A	p.Leu533Ile	p.L533I	ENST00000342988	NM_005359.5	533	Ctc/Atc						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42793388	42793388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	228	386	0	ENST00000575354.2:c.1190C>T	p.Ala397Val	p.A397V	ENST00000575354	NM_015125.3	397	gCt/gTt						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9538341	9538341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	327	521	0	ENST00000353224.5:c.1657C>A	p.Leu553Met	p.L553M	ENST00000353224	NM_177990.2	553	Ctg/Atg						NEWRECORD																																																																									
RARA	5914	MSKCC	GRCh37	17	38508612	38508626	+	inframe_deletion	In_Frame_Del	DEL	GGACATTGACCTCTG	GGACATTGACCTCTG	-			P-0007046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	439	599	0	ENST00000254066.5:c.665_679del	p.Ile222_Asp226del	p.I222_D226del	ENST00000254066	NM_000964.3	220	ctGGACATTGACCTCTGg/ctg						NEWRECORD																																																																									
PRKAR1A	5573	MSKCC	GRCh37	17	66526435	66526438	+	frameshift_variant	Frame_Shift_Del	DEL	ATGA	ATGA	-			P-0007046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	280	269	0	ENST00000358598.2:c.993_996del	p.Met331IlefsTer14	p.M331Ifs*14	ENST00000358598	NM_212471.2	331	ATGAat/at						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0009943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	134	523	2	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0009943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	63	611	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa						NEWRECORD																																																																									
ETV1	2115	MSKCC	GRCh37	7	13971206	13971206	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	124	471	0	ENST00000405192.2:c.723G>C	p.Met241Ile	p.M241I	ENST00000405192	NM_001163147.1	241	atG/atC						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108196137	108196137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	36	515	2	ENST00000278616.4:c.6673G>A	p.Ala2225Thr	p.A2225T	ENST00000278616	NM_000051.3	2225	Gct/Act						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15276723	15276723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	158	559	0	ENST00000263388.2:c.5542C>T	p.Arg1848Cys	p.R1848C	ENST00000263388	NM_000435.2	1848	Cgt/Tgt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0006588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	106	421	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0009481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	197	439	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157150545	157150545	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	56	189	0	ENST00000346085.5:c.1727C>G	p.Pro576Arg	p.P576R	ENST00000346085	NM_020732.3	576	cCt/cGt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108186757	108186757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	223	474	0	ENST00000278616.4:c.6115G>A	p.Glu2039Lys	p.E2039K	ENST00000278616	NM_000051.3	2039	Gaa/Aaa						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101911472	101911472	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	40	282	0	ENST00000374994.4:c.1397del	p.Val466GlufsTer6	p.V466Efs*6	ENST00000374994	NM_004612.2	466	gTa/ga						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76912049	76912049	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0009481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	240	517	0	ENST00000373344.5:c.4214+1del		p.X1405_splice	ENST00000373344	NM_000489.3	1405							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	615	264	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	292	279	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48573650	48573650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	63	165	1	ENST00000342988.3:c.234G>T	p.Leu78Phe	p.L78F	ENST00000342988	NM_005359.5	78	ttG/ttT						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63411395	63411395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	268	397	0	ENST00000330258.3:c.1772G>T	p.Arg591Met	p.R591M	ENST00000330258	NM_152424.3	591	aGg/aTg						NEWRECORD																																																																									
ERRFI1	54206	MSKCC	GRCh37	1	8075649	8075649	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	169	436	0	ENST00000377482.5:c.31A>T	p.Ile11Phe	p.I11F	ENST00000377482	NM_018948.3	11	Atc/Ttc						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187628722	187628722	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	209	301	0	ENST00000441802.2:c.2260T>A	p.Tyr754Asn	p.Y754N	ENST00000441802	NM_005245.3	754	Tat/Aat						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149515388	149515388	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	173	207	0	ENST00000261799.4:c.94G>T	p.Gly32Cys	p.G32C	ENST00000261799	NM_002609.3	32	Ggc/Tgc						NEWRECORD																																																																									
IFNGR1	3459	MSKCC	GRCh37	6	137519536	137519536	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	317	332	0	ENST00000367739.4:c.1102G>T	p.Gly368Cys	p.G368C	ENST00000367739	NM_000416.2	368	Ggc/Tgc						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133226047	133226047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	212	298	0	ENST00000320574.5:c.3850C>T	p.Arg1284Trp	p.R1284W	ENST00000320574	NM_006231.2	1284	Cgg/Tgg						NEWRECORD																																																																									
ERCC2	2068	MSKCC	GRCh37	19	45855903	45855903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	272	260	0	ENST00000391945.4:c.1907G>T	p.Arg636Leu	p.R636L	ENST00000391945	NM_000400.3	636	cGg/cTg						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63411815	63411815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	362	539	0	ENST00000330258.3:c.1352G>T	p.Gly451Val	p.G451V	ENST00000330258	NM_152424.3	451	gGg/gTg						NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209103865	209103867	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	275	358	0	ENST00000345146.2:c.1082_1084del	p.Glu361del	p.E361del	ENST00000345146	NM_005896.2	361	gAAGtc/gtc						NEWRECORD																																																																									
NF2	4771	MSKCC	GRCh37	22	30069277	30069277	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	211	232	0	ENST00000338641.4:c.1142del	p.Ala381ValfsTer45	p.A381Vfs*45	ENST00000338641	NM_000268.3	381	gCt/gt						NEWRECORD																																																																									
RHEB	6009	MSKCC	GRCh37	7	151181826	151181826	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	251	453	0	ENST00000262187.5:c.189del	p.Gln64LysfsTer13	p.Q64Kfs*13	ENST00000262187	NM_005614.3	63	ggG/gg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0005148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1089	234	391	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0005148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	424	382	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9546761	9546761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	165	227	0	ENST00000353224.5:c.1261G>A	p.Asp421Asn	p.D421N	ENST00000353224	NM_177990.2	421	Gac/Aac						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89445005	89445005	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112239794		P-0005148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	115	235	0	ENST00000336596.2:c.1325C>T	p.Thr442Met	p.T442M	ENST00000336596	NM_005233.5	442	aCg/aTg						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5069966	5069966	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	193	262	0	ENST00000381652.3:c.1555G>C	p.Asp519His	p.D519H	ENST00000381652	NM_004972.3	519	Gat/Cat						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5070046	5070046	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	140	155	0	ENST00000381652.3:c.1635G>C	p.Leu545Phe	p.L545F	ENST00000381652	NM_004972.3	545	ttG/ttC						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	561	513	0	ENST00000269305.4:c.659A>C	p.Tyr220Ser	p.Y220S	ENST00000269305	NM_001126112.2	220	tAt/tCt						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57485759	57485759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	211	325	0	ENST00000371085.3:c.1060G>A	p.Asp354Asn	p.D354N	ENST00000371085	NM_000516.4	354	Gat/Aat						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574000	7574000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	229	523	0	ENST00000269305.4:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000269305	NM_001126112.2	343	Gag/Tag						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226549731	226549731	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1015	79	497	0	ENST00000366794.5:c.2902G>C	p.Asp968His	p.D968H	ENST00000366794	NM_001618.3	968	Gac/Cac						NEWRECORD																																																																									
PIM1	5292	MSKCC	GRCh37	6	37141715	37141715	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	69	380	0	ENST00000373509.5:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000373509	NM_002648.3	264	Cag/Tag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	35	177	2	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0007093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	5541	407	29	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67591092	67591092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	229	263	0	ENST00000274335.5:c.1685G>C	p.Arg562Pro	p.R562P	ENST00000274335		562	cGt/cCt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174688	112174688	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	282	410	2	ENST00000257430.4:c.3397G>C	p.Asp1133His	p.D1133H	ENST00000257430	NM_000038.5	1133	Gat/Cat						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174888	112174888	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	240	311	0	ENST00000257430.4:c.3597G>C	p.Lys1199Asn	p.K1199N	ENST00000257430	NM_000038.5	1199	aaG/aaC						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576857	7576857	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	541	308	2	ENST00000269305.4:c.989T>C	p.Leu330Pro	p.L330P	ENST00000269305	NM_001126112.2	330	cTt/cCt						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29490395	29490395	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0007093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	402	221	0	ENST00000358273.4:c.479+1G>C		p.X160_splice	ENST00000358273	NM_001042492.2	160							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	568	674	0	ENST00000269305.4:c.814G>C	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ctg						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89390166	89390166	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	54	452	0	ENST00000336596.2:c.915G>C	p.Arg305Ser	p.R305S	ENST00000336596	NM_005233.5	305	agG/agC						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49037973	49037973	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0006412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	229	372	0	ENST00000267163.4:c.2211+2T>A		p.X737_splice	ENST00000267163	NM_000321.2	737							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	99	412	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	58	213	0				ENST00000310581	NM_198253.2								NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29940494	29940494	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1524	105	598	0	ENST00000389048.3:c.737C>G	p.Thr246Ser	p.T246S	ENST00000389048	NM_004304.4	246	aCc/aGc						NEWRECORD																																																																									
INHA	3623	MSKCC	GRCh37	2	220439554	220439554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1591	102	491	0	ENST00000243786.2:c.407G>T	p.Gly136Val	p.G136V	ENST00000243786	NM_002191.3	136	gGg/gTg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108154953	108154953	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0006364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	30	178	0	ENST00000278616.4:c.3747-1G>C		p.X1249_splice	ENST00000278616	NM_000051.3	1249							NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47040679	47040679	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	88	262	2	ENST00000329236.7:c.1080C>A	p.Tyr360Ter	p.Y360*	ENST00000329236	NM_001204466.1	360	taC/taA						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0008310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1069	103	399	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0008310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	222	383	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0008310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	49	335	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604653	48604653	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	45	297	0	ENST00000342988.3:c.1475T>G	p.Val492Gly	p.V492G	ENST00000342988	NM_005359.5	492	gTt/gGt						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89350146	89350146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	439	641	0	ENST00000301030.4:c.2804C>T	p.Ser935Leu	p.S935L	ENST00000301030	NM_001256183.1	935	tCg/tTg						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	338	335	0	ENST00000347630.2:c.393G>C	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgC						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72827511	72827511	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	469	559	2	ENST00000268489.5:c.9070del	p.Thr3024GlnfsTer52	p.T3024Qfs*52	ENST00000268489	NM_006885.3	3024	Aca/ca						NEWRECORD																																																																									
PAX5	5079	MSKCC	GRCh37	9	37020632	37020632	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0006574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	38	262	0	ENST00000358127.4:c.212+1G>A		p.X71_splice	ENST00000358127	NM_001280556.1	71							NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37619305	37619305	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0006574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	49	223	0	ENST00000447079.4:c.981T>G	p.Tyr327Ter	p.Y327*	ENST00000447079	NM_015083.1	327	taT/taG						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696448	47696448	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	29	351	0	ENST00000347630.2:c.375T>G	p.Phe125Leu	p.F125L	ENST00000347630	NM_001007230.1	125	ttT/ttG						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37649112	37649112	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	59	408	0	ENST00000447079.4:c.2218del	p.Gln740LysfsTer13	p.Q740Kfs*13	ENST00000447079	NM_015083.1	739	ggC/gg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0008878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	111	520	1	ENST00000269305.4:c.994-1G>T		p.X332_splice	ENST00000269305	NM_001126112.2	332							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0008878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	309	463	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100999088	100999088	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1097	233	565	0	ENST00000325455.5:c.714G>C	p.Lys238Asn	p.K238N	ENST00000325455	NM_001202474.3	238	aaG/aaC						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29576091	29576091	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1207	163	687	0	ENST00000358273.4:c.4064C>A	p.Ser1355Ter	p.S1355*	ENST00000358273	NM_001042492.2	1355	tCa/tAa						NEWRECORD																																																																									
MAP2K2	5605	MSKCC	GRCh37	19	4123808	4123808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	64	482	1	ENST00000262948.5:c.65C>T	p.Pro22Leu	p.P22L	ENST00000262948	NM_030662.3	22	cCa/cTa						NEWRECORD																																																																									
CCNE1	898	MSKCC	GRCh37	19	30308405	30308405	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	108	571	0	ENST00000262643.3:c.419T>G	p.Leu140Arg	p.L140R	ENST00000262643	NM_001238.2	140	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0009112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	33	450	3	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0009112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	46	243	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176665453	176665454	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	22	290	1	ENST00000439151.2:c.4137_4138delinsAA	p.Glu1380Lys	p.E1380K	ENST00000439151	NM_022455.4	1379	ccGGaa/ccAAaa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0008553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	42	583	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	13	389	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt						NEWRECORD																																																																									
CDKN2C	1031	MSKCC	GRCh37	1	51439563	51439563	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0008553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	38	483	0	ENST00000262662.1:c.130-2A>T		p.X44_splice	ENST00000262662		44							NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65321281	65321281	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	40	533	0	ENST00000342505.4:c.1559G>T	p.Gly520Val	p.G520V	ENST00000342505	NM_002227.2	520	gGa/gTa						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198281569	198281569	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	50	663	0	ENST00000335508.6:c.562G>T	p.Ala188Ser	p.A188S	ENST00000335508	NM_012433.2	188	Gca/Tca						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142281939	142281939	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	36	331	0	ENST00000350721.4:c.305G>A	p.Trp102Ter	p.W102*	ENST00000350721	NM_001184.3	102	tGg/tAg						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8492945	8492945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	67	562	0	ENST00000356435.5:c.2384C>T	p.Ser795Phe	p.S795F	ENST00000356435		795	tCc/tTc						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139399281	139399281	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	64	539	0	ENST00000277541.6:c.4862G>T	p.Gly1621Val	p.G1621V	ENST00000277541	NM_017617.3	1621	gGc/gTc						NEWRECORD																																																																									
CDKN1B	1027	MSKCC	GRCh37	12	12871131	12871131	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	24	263	2	ENST00000228872.4:c.361del	p.Ala121LeufsTer24	p.A121Lfs*24	ENST00000228872	NM_004064.3	120	Ggg/gg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540652		P-0007099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	156	428	0	ENST00000269305.4:c.743G>C	p.Arg248Pro	p.R248P	ENST00000269305	NM_001126112.2	248	cGg/cCg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0007099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	112	301	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220382	1220382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	135	349	0	ENST00000326873.7:c.475C>T	p.Gln159Ter	p.Q159*	ENST00000326873	NM_000455.4	159	Cag/Tag						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602584	10602584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	149	283	0	ENST00000171111.5:c.994G>T	p.Gly332Cys	p.G332C	ENST00000171111	NM_203500.1	332	Ggc/Tgc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023492	27023492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	185	415	0	ENST00000324856.7:c.598C>T	p.Gln200Ter	p.Q200*	ENST00000324856	NM_006015.4	200	Cag/Tag						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89259427	89259427	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	202	460	0	ENST00000336596.2:c.571G>T	p.Ala191Ser	p.A191S	ENST00000336596	NM_005233.5	191	Gcc/Tcc						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55971046	55971046	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	160	397	1	ENST00000263923.4:c.1751A>T	p.Tyr584Phe	p.Y584F	ENST00000263923	NM_002253.2	584	tAc/tTc						NEWRECORD																																																																									
PLK2	10769	MSKCC	GRCh37	5	57755707	57755707	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	109	211	0	ENST00000274289.3:c.80G>T	p.Gly27Val	p.G27V	ENST00000274289	NM_006622.3	27	gGa/gTa						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32190315	32190315	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	97	214	1	ENST00000375023.3:c.424C>T	p.Gln142Ter	p.Q142*	ENST00000375023	NM_004557.3	142	Cag/Tag						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70120458	70120458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	361	388	0	ENST00000245479.2:c.1460C>T	p.Pro487Leu	p.P487L	ENST00000245479	NM_000346.3	487	cCt/cTt						NEWRECORD																																																																									
ARAF	369	MSKCC	GRCh37	X	47424426	47424426	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	155	403	1	ENST00000377045.4:c.346C>A	p.Leu116Ile	p.L116I	ENST00000377045	NM_001654.4	116	Ctt/Att						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	33	410	0	ENST00000269305.4:c.808T>G	p.Phe270Val	p.F270V	ENST00000269305	NM_001126112.2	270	Ttt/Gtt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0008595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			161	42	205	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27092809	27092809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			428	128	455	1	ENST00000324856.7:c.2830C>T	p.Gln944Ter	p.Q944*	ENST00000324856	NM_006015.4	944	Cag/Tag						NEWRECORD																																																																									
GATA2	2624	MSKCC	GRCh37	3	128205055	128205055	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0008595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			436	77	326	0	ENST00000341105.2:c.386C>G	p.Ser129Ter	p.S129*	ENST00000341105	NM_032638.4	129	tCa/tGa						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142171996	142171996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			437	106	545	2	ENST00000350721.4:c.7735G>A	p.Glu2579Lys	p.E2579K	ENST00000350721	NM_001184.3	2579	Gaa/Aaa						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56189448	56189448	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			329	96	410	1	ENST00000399503.3:c.4480C>T	p.Gln1494Ter	p.Q1494*	ENST00000399503	NM_005921.1	1494	Cag/Tag						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32163768	32163768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			371	73	284	0	ENST00000375023.3:c.5458G>A	p.Glu1820Lys	p.E1820K	ENST00000375023	NM_004557.3	1820	Gaa/Aaa						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32163848	32163848	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			249	50	177	0	ENST00000375023.3:c.5378G>C	p.Arg1793Pro	p.R1793P	ENST00000375023	NM_004557.3	1793	cGa/cCa						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	420075	420075	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			589	139	523	0	ENST00000399788.2:c.3192G>C	p.Lys1064Asn	p.K1064N	ENST00000399788	NM_001042603.1	1064	aaG/aaC						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95570416	95570416	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			237	42	215	0	ENST00000343455.3:c.3317C>G	p.Ser1106Cys	p.S1106C	ENST00000343455	NM_177438.2	1106	tCt/tGt						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9858783	9858783	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			223	54	252	0	ENST00000330684.3:c.2618G>C	p.Gly873Ala	p.G873A	ENST00000330684	NM_001134407.1	873	gGa/gCa						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68863554	68863554	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0008595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			286	158	398	0	ENST00000261769.5:c.2296-3A>G		p.X766_splice	ENST00000261769	NM_004360.3	766							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	209	383	3	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	246	279	1	ENST00000269305.4:c.535C>G	p.His179Asp	p.H179D	ENST00000269305	NM_001126112.2	179	Cat/Gat						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57478590	57478590	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	223	349	1	ENST00000371085.3:c.262A>G	p.Lys88Glu	p.K88E	ENST00000371085	NM_000516.4	88	Aag/Gag						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44942837	44942842	+	inframe_deletion	In_Frame_Del	DEL	AGGGAG	AGGGAG	-			P-0005075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	261	296	0	ENST00000377967.4:c.3417_3422del	p.Gly1140_Ser1141del	p.G1140_S1141del	ENST00000377967	NM_021140.2	1139	ccAGGGAGc/ccc						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29664577	29664577	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	190	651	0	ENST00000358273.4:c.6619G>T	p.Glu2207Ter	p.E2207*	ENST00000358273	NM_001042492.2	2207	Gaa/Taa						NEWRECORD																																																																									
FOXP1	27086	MSKCC	GRCh37	3	71050149	71050150	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	AT			P-0005811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	140	470	3	ENST00000318789.4:c.1035_1036delinsAT	p.Met345_Gln346delinsIleTer	p.M345_Q346delinsI*	ENST00000318789	NM_032682.5	345	atGCag/atATag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	117	627	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	31	344	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0007600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	54	787	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41277880	41277880	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	155	746	0	ENST00000349496.5:c.1844C>A	p.Ala615Glu	p.A615E	ENST00000349496	NM_001904.3	615	gCa/gAa						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15272302	15272302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	89	489	0	ENST00000263388.2:c.6137C>A	p.Pro2046Gln	p.P2046Q	ENST00000263388	NM_000435.2	2046	cCa/cAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0005017-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			831	359	479	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0005017-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			747	283	450	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143003313	143003313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005017-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			807	127	360	0	ENST00000262992.4:c.2513G>A	p.Arg838His	p.R838H	ENST00000262992	NM_001101669.1	838	cGt/cAt						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81388043	81388043	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005017-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			781	176	590	0	ENST00000222390.5:c.332A>T	p.Glu111Val	p.E111V	ENST00000222390	NM_000601.4	111	gAa/gTa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0004589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	201	505	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	115	425	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5089863	5089863	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	97	275	0	ENST00000381652.3:c.2761G>A	p.Gly921Ser	p.G921S	ENST00000381652	NM_004972.3	921	Ggt/Agt						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	30143462	30143462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	17	95	0	ENST00000389048.3:c.64G>A	p.Gly22Arg	p.G22R	ENST00000389048	NM_004304.4	22	Ggg/Agg						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1293475	1293475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	51	393	0	ENST00000310581.5:c.1526C>T	p.Thr509Met	p.T509M	ENST00000310581	NM_198253.2	509	aCg/aTg						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8341937	8341937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	70	336	0	ENST00000356435.5:c.4703C>T	p.Ala1568Val	p.A1568V	ENST00000356435		1568	gCc/gTc						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56440680	56440680	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1111	70	530	0	ENST00000407977.2:c.538C>G	p.Gln180Glu	p.Q180E	ENST00000407977		180	Caa/Gaa						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9561022	9561022	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	68	321	0	ENST00000353224.5:c.760G>C	p.Glu254Gln	p.E254Q	ENST00000353224	NM_177990.2	254	Gaa/Caa						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40739099	40739099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	65	261	0	ENST00000373198.4:c.3185G>T	p.Arg1062Leu	p.R1062L	ENST00000373198	NM_133170.3	1062	cGc/cTc						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70347238	70347238	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	86	516	1	ENST00000374080.3:c.2902G>C	p.Glu968Gln	p.E968Q	ENST00000374080		968	Gag/Cag						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0009904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	11	509	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55136874	55136874	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	36	663	0	ENST00000257290.5:c.1196A>C	p.Glu399Ala	p.E399A	ENST00000257290	NM_006206.4	399	gAa/gCa						NEWRECORD																																																																									
FOXO1	2308	MSKCC	GRCh37	13	41134526	41134526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	49	905	2	ENST00000379561.5:c.1102C>A	p.Pro368Thr	p.P368T	ENST00000379561	NM_002015.3	368	Ccc/Acc						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108159738	108159738	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	44	492	0	ENST00000278616.4:c.4145del	p.Pro1382HisfsTer4	p.P1382Hfs*4	ENST00000278616	NM_000051.3	1382	Cca/ca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0009691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	127	648	2	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt						NEWRECORD																																																																									
ERRFI1	54206	MSKCC	GRCh37	1	8073323	8073323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1573	140	839	0	ENST00000377482.5:c.1336G>T	p.Asp446Tyr	p.D446Y	ENST00000377482	NM_018948.3	446	Gat/Tat						NEWRECORD																																																																									
MUTYH	4595	MSKCC	GRCh37	1	45796865	45796865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	39	351	0	ENST00000372115.3:c.1423G>T	p.Ala475Ser	p.A475S	ENST00000372115	NM_001048171.1	475	Gcc/Tcc						NEWRECORD																																																																									
MUTYH	4595	MSKCC	GRCh37	1	45798613	45798613	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	42	362	0	ENST00000372115.3:c.439G>T	p.Asp147Tyr	p.D147Y	ENST00000372115	NM_001048171.1	147	Gac/Tac						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55153657	55153657	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1325	146	665	0	ENST00000257290.5:c.2623C>A	p.Leu875Met	p.L875M	ENST00000257290	NM_006206.4	875	Ctg/Atg						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55593669	55593669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	167	448	2	ENST00000288135.5:c.1735G>T	p.Asp579Tyr	p.D579Y	ENST00000288135	NM_000222.2	579	Gat/Tat						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55946329	55946329	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0009691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	33	256	0	ENST00000263923.4:c.3850G>C	p.Gly1284Arg	p.G1284R	ENST00000263923	NM_002253.2	1284	Gga/Cga						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66242776	66242776	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	119	446	0	ENST00000273854.3:c.1796G>T	p.Cys599Phe	p.C599F	ENST00000273854	NM_004439.5	599	tGc/tTc						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41729968	41729968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1379	154	899	0	ENST00000242208.4:c.561C>A	p.Asp187Glu	p.D187E	ENST00000242208	NM_002192.2	187	gaC/gaA						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50459467	50459467	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	91	390	0	ENST00000331340.3:c.756C>G	p.Asp252Glu	p.D252E	ENST00000331340	NM_006060.4	252	gaC/gaG						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8492867	8492867	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	143	440	0	ENST00000356435.5:c.2462G>T	p.Gly821Val	p.G821V	ENST00000356435		821	gGg/gTg						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8518363	8518363	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	96	343	0	ENST00000356435.5:c.1028G>T	p.Trp343Leu	p.W343L	ENST00000356435		343	tGg/tTg						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70451003	70451003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	42	424	1	ENST00000373644.4:c.5843C>T	p.Ser1948Phe	p.S1948F	ENST00000373644	NM_030625.2	1948	tCt/tTt						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	416218	416218	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1263	113	577	1	ENST00000399788.2:c.3968G>T	p.Arg1323Leu	p.R1323L	ENST00000399788	NM_001042603.1	1323	cGg/cTg						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115117759	115117759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	87	562	1	ENST00000257566.3:c.676G>T	p.Asp226Tyr	p.D226Y	ENST00000257566	NM_016569.3	226	Gat/Tat						NEWRECORD																																																																									
NKX2-1	7080	MSKCC	GRCh37	14	36989288	36989288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	153	580	1	ENST00000354822.5:c.47C>A	p.Ala16Glu	p.A16E	ENST00000354822	NM_001079668.2	16	gCg/gAg						NEWRECORD																																																																									
GREM1	26585	MSKCC	GRCh37	15	33023013	33023013	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	69	765	0	ENST00000300177.4:c.122A>C	p.His41Pro	p.H41P	ENST00000300177	NM_001191322.1	41	cAc/cCc						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	10273974	10273974	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	123	640	0	ENST00000330684.3:c.295G>C	p.Val99Leu	p.V99L	ENST00000330684	NM_001134407.1	99	Gtg/Ctg						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67645032	67645032	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	60	499	1	ENST00000264010.4:c.297G>T	p.Gln99His	p.Q99H	ENST00000264010	NM_006565.3	99	caG/caT						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72923738	72923738	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1199	70	772	0	ENST00000268489.5:c.3340C>G	p.Arg1114Gly	p.R1114G	ENST00000268489	NM_006885.3	1114	Cga/Gga						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220488	1220488	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	94	444	0	ENST00000326873.7:c.581A>T	p.Asp194Val	p.D194V	ENST00000326873	NM_000455.4	194	gAc/gTc						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9523275	9523275	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	132	659	0	ENST00000353224.5:c.1962G>T	p.Arg654Ser	p.R654S	ENST00000353224	NM_177990.2	654	agG/agT						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40714387	40714387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	78	428	0	ENST00000373198.4:c.4010G>T	p.Arg1337Leu	p.R1337L	ENST00000373198	NM_133170.3	1337	cGc/cTc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	68	512	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47142966	47142966	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	104	559	0	ENST00000409792.3:c.4997A>G	p.Tyr1666Cys	p.Y1666C	ENST00000409792	NM_014159.6	1666	tAt/tGt						NEWRECORD																																																																									
MDM2	4193	MSKCC	GRCh37	12	69222655	69222666	+	inframe_deletion	In_Frame_Del	DEL	GAGATATGTTGT	GAGATATGTTGT	-			P-0004972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	73	716	0	ENST00000462284.1:c.630_641del	p.Ile211_Glu214del	p.I211_E214del	ENST00000462284	NM_002392.5	210	GAGATATGTTGT/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0008839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	71	403	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0005853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	989	963	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31372633	31372633	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149520896		P-0005853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3351	604	872	0	ENST00000328111.2:c.274C>T	p.Arg92Trp	p.R92W	ENST00000328111	NM_006892.3	92	Cgg/Tgg						NEWRECORD																																																																									
CDKN1B	1027	MSKCC	GRCh37	12	12870804	12870804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	156	295	0	ENST00000228872.4:c.31C>T	p.Pro11Ser	p.P11S	ENST00000228872	NM_004064.3	11	Cct/Tct						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	29008200	29008200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	574	687	2	ENST00000282397.4:c.671G>A	p.Arg224Gln	p.R224Q	ENST00000282397	NM_002019.4	224	cGa/cAa						NEWRECORD																																																																									
TCF3	6929	MSKCC	GRCh37	19	1615691	1615691	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141432924		P-0005853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1396	777	1337	4	ENST00000344749.5:c.1580G>A	p.Arg527Gln	p.R527Q	ENST00000344749	NM_001136139.2	527	cGg/cAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175419	112175420	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0005853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	705	530	0	ENST00000257430.4:c.4129_4130del	p.Val1377SerfsTer8	p.V1377Sfs*8	ENST00000257430	NM_000038.5	1376	taTGtt/tatt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	68	572	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15296442	15296442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	87	780	0	ENST00000263388.2:c.2000G>T	p.Gly667Val	p.G667V	ENST00000263388	NM_000435.2	667	gGc/gTc						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17954604	17954604	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	54	609	0	ENST00000458235.1:c.290T>C	p.Val97Ala	p.V97A	ENST00000458235	NM_000215.3	97	gTc/gCc						NEWRECORD																																																																									
MEF2B	100271849	MSKCC	GRCh37	19	19258525	19258525	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	98	911	0	ENST00000162023.5:c.375G>T	p.Leu125Phe	p.L125F	ENST00000162023		125	ttG/ttT						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	114	249	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
FAM46C	54855	MSKCC	GRCh37	1	118165711	118165711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	120	216	0	ENST00000369448.3:c.221C>T	p.Ser74Phe	p.S74F	ENST00000369448	NM_017709.3	74	tCc/tTc						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115117315	115117315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	114	257	0	ENST00000257566.3:c.859G>A	p.Asp287Asn	p.D287N	ENST00000257566	NM_016569.3	287	Gat/Aat						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95579539	95579539	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	94	188	0	ENST00000343455.3:c.1930G>T	p.Asp644Tyr	p.D644Y	ENST00000343455	NM_177438.2	644	Gat/Tat						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220699	1220699	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	121	249	0	ENST00000326873.7:c.717G>A	p.Trp239Ter	p.W239*	ENST00000326873	NM_000455.4	239	tgG/tgA						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600488	10600488	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	116	225	0	ENST00000171111.5:c.1367T>A	p.Met456Lys	p.M456K	ENST00000171111	NM_203500.1	456	aTg/aAg						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600525	10600525	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	121	203	0	ENST00000171111.5:c.1330G>T	p.Glu444Ter	p.E444*	ENST00000171111	NM_203500.1	444	Gag/Tag						NEWRECORD																																																																									
GATA1	2623	MSKCC	GRCh37	X	48650785	48650785	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	137	391	0	ENST00000376670.3:c.654C>A	p.Asp218Glu	p.D218E	ENST00000376670	NM_002049.3	218	gaC/gaA						NEWRECORD																																																																									
GATA1	2623	MSKCC	GRCh37	X	48652358	48652358	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	125	355	0	ENST00000376670.3:c.1029C>A	p.Ser343Arg	p.S343R	ENST00000376670	NM_002049.3	343	agC/agA						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70339934	70339934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	158	336	0	ENST00000374080.3:c.467C>A	p.Ala156Asp	p.A156D	ENST00000374080		156	gCt/gAt						NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100613615	100613615	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0004891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	132	319	0	ENST00000308731.7:c.964A>T	p.Lys322Ter	p.K322*	ENST00000308731	NM_000061.2	322	Aaa/Taa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	97	517	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0007678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	89	488	4	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41306741	41306741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	52	423	0	ENST00000373198.4:c.918G>T	p.Trp306Cys	p.W306C	ENST00000373198	NM_133170.3	306	tgG/tgT						NEWRECORD																																																																									
HLA-A	3105	MSKCC	GRCh37	6	29910549	29910549	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45585732		P-0007678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	21	78	2	ENST00000376809.5:c.89G>A	p.Arg30Lys	p.R30K	ENST00000376809	NM_002116.7	30	aGg/aAg						NEWRECORD																																																																									
FGF3	2248	MSKCC	GRCh37	11	69631129	69631129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	44	755	3	ENST00000334134.2:c.283C>T	p.Arg95Trp	p.R95W	ENST00000334134	NM_005247.2	95	Cgg/Tgg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0007004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	196	727	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220717	1220717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0007004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	154	695	0	ENST00000326873.7:c.734+1G>T		p.X245_splice	ENST00000326873	NM_000455.4	245							NEWRECORD																																																																									
FOXP1	27086	MSKCC	GRCh37	3	71064719	71064719	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	128	717	0	ENST00000318789.4:c.955G>C	p.Asp319His	p.D319H	ENST00000318789	NM_032682.5	319	Gat/Cat						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8486233	8486233	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	177	923	0	ENST00000356435.5:c.2584C>G	p.Arg862Gly	p.R862G	ENST00000356435		862	Cgc/Ggc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8518067	8518067	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	144	831	0	ENST00000356435.5:c.1324G>T	p.Glu442Ter	p.E442*	ENST00000356435		442	Gaa/Taa						NEWRECORD																																																																									
CD79B	974	MSKCC	GRCh37	17	62007484	62007484	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	184	1229	0	ENST00000392795.3:c.383A>G	p.Asn128Ser	p.N128S	ENST00000392795	NM_001039933.1	128	aAc/aGc						NEWRECORD																																																																									
ARAF	369	MSKCC	GRCh37	X	47426638	47426638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	135	1229	0	ENST00000377045.4:c.883G>T	p.Gly295Trp	p.G295W	ENST00000377045	NM_001654.4	295	Ggg/Tgg						NEWRECORD																																																																									
SH2B3	10019	MSKCC	GRCh37	12	111855951	111855951	+	start_lost	Translation_Start_Site	SNP	T	T	G			P-0007340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1575	252	681	0	ENST00000341259.2:c.2T>G	p.Met1?	p.M1?	ENST00000341259	NM_005475.2	1	aTg/aGg						NEWRECORD																																																																									
SRSF2	6427	MSKCC	GRCh37	17	74733218	74733218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2485	181	778	2	ENST00000359995.5:c.25G>A	p.Asp9Asn	p.D9N	ENST00000359995	NM_001195427.1	9	Gat/Aat						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41572904	41572904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1335	212	623	0	ENST00000263253.7:c.5189C>A	p.Ser1730Tyr	p.S1730Y	ENST00000263253	NM_001429.3	1730	tCt/tAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0006127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	233	709	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187541181	187541181	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	69	439	0	ENST00000441802.2:c.6559T>C	p.Tyr2187His	p.Y2187H	ENST00000441802	NM_005245.3	2187	Tac/Cac						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187541193	187541193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	79	493	0	ENST00000441802.2:c.6547G>A	p.Glu2183Lys	p.E2183K	ENST00000441802	NM_005245.3	2183	Gaa/Aaa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187541310	187541310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	144	618	0	ENST00000441802.2:c.6430G>A	p.Asp2144Asn	p.D2144N	ENST00000441802	NM_005245.3	2144	Gac/Aac						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1226486	1226486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1218	77	876	1	ENST00000326873.7:c.1142G>T	p.Gly381Val	p.G381V	ENST00000326873	NM_000455.4	381	gGa/gTa						NEWRECORD																																																																									
GATA1	2623	MSKCC	GRCh37	X	48650319	48650319	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	161	371	0	ENST00000376670.3:c.289G>C	p.Ala97Pro	p.A97P	ENST00000376670	NM_002049.3	97	Gcc/Ccc						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187541569	187541589	+	inframe_deletion	In_Frame_Del	DEL	ATGTTCCTCTGTCACTTCTAC	ATGTTCCTCTGTCACTTCTAC	-			P-0006127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	115	534	0	ENST00000441802.2:c.6151_6171del	p.Val2051_His2057del	p.V2051_H2057del	ENST00000441802	NM_005245.3	2051	GTAGAAGTGACAGAGGAACAT/-						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116411888	116411907	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTCTCTGTTTTAAGATCTG	TCTCTCTGTTTTAAGATCTG	-			P-0006127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	188	334	0	ENST00000397752.3:c.2888-15_2892del		p.X963_splice	ENST00000397752	NM_000245.2	963							NEWRECORD																																																																									
FOXP1	27086	MSKCC	GRCh37	3	71090624	71090624	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	126	434	0	ENST00000318789.4:c.724G>T	p.Glu242Ter	p.E242*	ENST00000318789	NM_032682.5	242	Gaa/Taa						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95574366	95574366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	34	393	0	ENST00000343455.3:c.2501C>T	p.Ser834Phe	p.S834F	ENST00000343455	NM_177438.2	834	tCt/tTt						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29553622	29553622	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	91	401	0	ENST00000358273.4:c.2171A>G	p.Asp724Gly	p.D724G	ENST00000358273	NM_001042492.2	724	gAt/gGt						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10291501	10291501	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	55	761	0	ENST00000340748.4:c.178C>G	p.Gln60Glu	p.Q60E	ENST00000340748		60	Cag/Gag						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29497012	29497192	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGGGTAAGTTTAAATGTATAATATATCTGAAAAAAATCACTGGGTCAAAAACTAGTATCATGAATGTACTAATTATATTAATTGTGCTGAACTAGAACACCAAACTGGATTTTATAATGACATTTCCTTGTGAAATAACCAGTAATACAAATGGGTAATTATTTTTCAATCTTTGAAAAT	AAGGGTAAGTTTAAATGTATAATATATCTGAAAAAAATCACTGGGTCAAAAACTAGTATCATGAATGTACTAATTATATTAATTGTGCTGAACTAGAACACCAAACTGGATTTTATAATGACATTTCCTTGTGAAATAACCAGTAATACAAATGGGTAATTATTTTTCAATCTTTGAAAAT	-			P-0009815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	124	253	0	ENST00000358273.4:c.585_586+179del		p.X195_splice	ENST00000358273	NM_001042492.2	195							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578372	7578373	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AT	AT	C			P-0009815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			66	98	279	0	ENST00000269305.4:c.557_558delinsG	p.Asp186GlyfsTer61	p.D186Gfs*61	ENST00000269305	NM_001126112.2	186	gAT/gG						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	219	360	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	110	357	0	ENST00000269305.4:c.737T>C	p.Met246Thr	p.M246T	ENST00000269305	NM_001126112.2	246	aTg/aCg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0008131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	506	389	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0008131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	958	500	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224							NEWRECORD																																																																									
INHA	3623	MSKCC	GRCh37	2	220439900	220439900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	256	519	1	ENST00000243786.2:c.753G>T	p.Arg251Ser	p.R251S	ENST00000243786	NM_002191.3	251	agG/agT						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185167708	185167708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	545	577	0	ENST00000265026.3:c.1031G>C	p.Trp344Ser	p.W344S	ENST00000265026	NM_004721.4	344	tGg/tCg						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32188638	32188638	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	396	377	0	ENST00000375023.3:c.817T>A	p.Cys273Ser	p.C273S	ENST00000375023	NM_004557.3	273	Tgt/Agt						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157099508	157099508	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	121	267	0	ENST00000346085.5:c.445C>T	p.Gln149Ter	p.Q149*	ENST00000346085	NM_020732.3	149	Cag/Tag						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157099492	157099494	+	inframe_deletion	In_Frame_Del	DEL	GGG	GGG	-			P-0008131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	130	299	0	ENST00000346085.5:c.429_431del	p.Gly146del	p.G146del	ENST00000346085	NM_020732.3	143	gcGGGc/gcc						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0008346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	432	446	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
NEGR1	257194	MSKCC	GRCh37	1	71873192	71873192	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1023	301	987	4	ENST00000357731.5:c.1002C>A	p.Tyr334Ter	p.Y334*	ENST00000357731	NM_173808.2	334	taC/taA						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55211169	55211169	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	72	427	0	ENST00000275493.2:c.412A>G	p.Arg138Gly	p.R138G	ENST00000275493	NM_005228.3	138	Aga/Gga						NEWRECORD																																																																									
SH2B3	10019	MSKCC	GRCh37	12	111884952	111884952	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	457	711	0	ENST00000341259.2:c.950T>C	p.Met317Thr	p.M317T	ENST00000341259	NM_005475.2	317	aTg/aCg						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42796768	42796768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	140	480	0	ENST00000575354.2:c.3226C>A	p.Pro1076Thr	p.P1076T	ENST00000575354	NM_015125.3	1076	Ccc/Acc						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061137	38061161	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCCCGCTTCCGCTCCCGCCCCCG	GCCCCCGCTTCCGCTCCCGCCCCCG	-			P-0008346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	53	110	0	ENST00000250448.2:c.828_852delCGGGGGCGGGAGCGGAAGCGGGGGC	p.Gly277AlafsTer36	p.G277Afs*36	ENST00000250448	NM_004496.3	276	ggCGGGGGCGGGAGCGGAAGCGGGGGC/gg						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48954334	48954335	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0008346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	241	448	0	ENST00000267163.4:c.1456_1457delTT	p.Leu486IlefsTer6	p.L486Ifs*6	ENST00000267163	NM_000321.2	485	tcTTta/tcta						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16004609	16004609	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	321	555	0	ENST00000268712.3:c.2645delC	p.Thr882SerfsTer27	p.T882Sfs*27	ENST00000268712	NM_006311.3	882	aCg/ag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579403	7579410	+	frameshift_variant	Frame_Shift_Del	DEL	GATGACAG	GATGACAG	-			P-0008346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	203	437	0	ENST00000269305.4:c.277_284delCTGTCATC	p.Leu93PhefsTer53	p.L93Ffs*53	ENST00000269305	NM_001126112.2	93	CTGTCATCt/t						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	100	535	0	ENST00000269305.4:c.659A>C	p.Tyr220Ser	p.Y220S	ENST00000269305	NM_001126112.2	220	tAt/tCt						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8341941	8341941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	53	342	0	ENST00000356435.5:c.4699G>A	p.Asp1567Asn	p.D1567N	ENST00000356435		1567	Gat/Aat						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89521739	89521739	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	41	265	0	ENST00000336596.2:c.2816C>G	p.Ser939Cys	p.S939C	ENST00000336596	NM_005233.5	939	tCt/tGt						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180056402	180056402	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	50	334	0	ENST00000261937.6:c.842A>G	p.Glu281Gly	p.E281G	ENST00000261937	NM_182925.4	281	gAg/gGg						NEWRECORD																																																																									
PNRC1	10957	MSKCC	GRCh37	6	89793539	89793539	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	85	309	0	ENST00000336032.3:c.608T>C	p.Ile203Thr	p.I203T	ENST00000336032	NM_006813.2	203	aTa/aCa						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2984107	2984107	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	50	241	0	ENST00000396946.4:c.423G>C	p.Gln141His	p.Q141H	ENST00000396946	NM_032415.4	141	caG/caC						NEWRECORD																																																																									
FGF4	2249	MSKCC	GRCh37	11	69589540	69589540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	33	123	0	ENST00000168712.1:c.313G>A	p.Gly105Ser	p.G105S	ENST00000168712	NM_002007.2	105	Ggc/Agc						NEWRECORD																																																																									
ETV6	2120	MSKCC	GRCh37	12	11992208	11992208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	77	378	0	ENST00000396373.4:c.298G>C	p.Glu100Gln	p.E100Q	ENST00000396373	NM_001987.4	100	Gag/Cag						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32937380	32937380	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	56	398	0	ENST00000380152.3:c.8041A>C	p.Thr2681Pro	p.T2681P	ENST00000380152		2681	Aca/Cca						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72992178	72992178	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	164	684	0	ENST00000268489.5:c.1867G>T	p.Ala623Ser	p.A623S	ENST00000268489	NM_006885.3	623	Gct/Tct						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575055	48575055	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	56	358	1	ENST00000342988.3:c.250-1G>T		p.X84_splice	ENST00000342988	NM_005359.5	84							NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31024858	31024858	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	76	560	0	ENST00000375687.4:c.4343A>T	p.Gln1448Leu	p.Q1448L	ENST00000375687	NM_015338.5	1448	cAa/cTa						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66765796	66765796	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	107	310	1	ENST00000374690.3:c.808G>T	p.Ala270Ser	p.A270S	ENST00000374690	NM_000044.3	270	Gcc/Tcc						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89498386	89498386	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	53	377	0	ENST00000336596.2:c.2360del	p.Pro787GlnfsTer10	p.P787Qfs*10	ENST00000336596	NM_005233.5	786	atC/at						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41076932	41076932	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	109	449	0	ENST00000373198.4:c.1488delG	p.Phe498LeufsTer103	p.F498Lfs*103	ENST00000373198	NM_133170.3	496	ggG/gg						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89828356	89828357	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AT			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	43	387	0	ENST00000389301.3:c.2852_2852+1delinsAT		p.X951_splice	ENST00000389301	NM_000135.2	951							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0007183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	187	191	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95562623	95562623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	156	199	0	ENST00000343455.3:c.4634C>T	p.Ser1545Phe	p.S1545F	ENST00000343455	NM_177438.2	1545	tCt/tTt						NEWRECORD																																																																									
TRAF7	84231	MSKCC	GRCh37	16	2213924	2213924	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0007183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1287	399	230	0	ENST00000326181.6:c.3G>A	p.Met1?	p.M1?	ENST00000326181	NM_032271.2	1	atG/atA						NEWRECORD																																																																									
CDKN1B	1027	MSKCC	GRCh37	12	12871758	12871758	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0007183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	184	95	0	ENST00000228872.4:c.476-1G>C		p.X159_splice	ENST00000228872	NM_004064.3	159							NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36932358	36932358	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	662	453	0	ENST00000361632.4:c.2111A>G	p.Lys704Arg	p.K704R	ENST00000361632		704	aAg/aGg						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226589926	226589926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	311	161	0	ENST00000366794.5:c.275G>A	p.Gly92Glu	p.G92E	ENST00000366794	NM_001618.3	92	gGa/gAa						NEWRECORD																																																																									
CASP8	841	MSKCC	GRCh37	2	202137450	202137450	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	377	278	0	ENST00000358485.4:c.678C>G	p.Ile226Met	p.I226M	ENST00000358485	NM_001080125.1	226	atC/atG						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212578349	212578349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	217	191	0	ENST00000342788.4:c.908C>T	p.Ser303Phe	p.S303F	ENST00000342788	NM_005235.2	303	tCt/tTt						NEWRECORD																																																																									
RAF1	5894	MSKCC	GRCh37	3	12650419	12650419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	210	196	0	ENST00000251849.4:c.427C>T	p.Arg143Trp	p.R143W	ENST00000251849	NM_002880.3	143	Cgg/Tgg						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55962480	55962480	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	169	262	0	ENST00000263923.4:c.2644C>G	p.Leu882Val	p.L882V	ENST00000263923	NM_002253.2	882	Ctc/Gtc						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145737588	145737588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	155	251	0	ENST00000428558.2:c.3175G>A	p.Val1059Met	p.V1059M	ENST00000428558	NM_004260.3	1059	Gtg/Atg						NEWRECORD																																																																									
PPP6C	5537	MSKCC	GRCh37	9	127920586	127920586	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1170	164	424	0	ENST00000373547.4:c.313G>C	p.Asp105His	p.D105H	ENST00000373547	NM_002721.4	105	Gat/Cat						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114925606	114925606	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	612	473	0	ENST00000543371.1:c.1684G>T	p.Ala562Ser	p.A562S	ENST00000543371	NM_001198531.1	562	Gct/Tct						NEWRECORD																																																																									
MYOD1	4654	MSKCC	GRCh37	11	17742515	17742515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	402	261	0	ENST00000250003.3:c.697G>A	p.Glu233Lys	p.E233K	ENST00000250003	NM_002478.4	233	Gag/Aag						NEWRECORD																																																																									
CBL	867	MSKCC	GRCh37	11	119142446	119142446	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0007183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	221	168	0	ENST00000264033.4:c.445C>T	p.Arg149Ter	p.R149*	ENST00000264033	NM_005188.3	149	Cga/Tga						NEWRECORD																																																																									
SUZ12	23512	MSKCC	GRCh37	17	30264275	30264275	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			29	37	10	0	ENST00000322652.5:c.10C>T	p.Gln4Ter	p.Q4*	ENST00000322652	NM_015355.2	4	Cag/Tag						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17955130	17955130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	364	234	0	ENST00000458235.1:c.97C>T	p.Arg33Trp	p.R33W	ENST00000458235	NM_000215.3	33	Cgg/Tgg						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39935769	39935769	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	461	321	1	ENST00000378444.4:c.103G>T	p.Asp35Tyr	p.D35Y	ENST00000378444	NM_001123385.1	35	Gat/Tat						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44950082	44950082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	319	352	0	ENST00000377967.4:c.3851C>T	p.Ser1284Leu	p.S1284L	ENST00000377967	NM_021140.2	1284	tCa/tTa						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63411831	63411831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	572	459	0	ENST00000330258.3:c.1336C>T	p.Pro446Ser	p.P446S	ENST00000330258	NM_152424.3	446	Cct/Tct						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0007749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	240	425	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176671220	176671220	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	147	611	0	ENST00000439151.2:c.4327A>C	p.Asn1443His	p.N1443H	ENST00000439151	NM_022455.4	1443	Aat/Cat						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	282	424	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578412	7578412	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	94	286	0	ENST00000269305.4:c.518T>G	p.Val173Gly	p.V173G	ENST00000269305	NM_001126112.2	173	gTg/gGg						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30732911	30732911	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0007906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	91	255	0	ENST00000359013.4:c.1601del		p.X534_splice	ENST00000359013	NM_001024847.2	534							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579356	7579359	+	frameshift_variant	Frame_Shift_Del	DEL	GACG	GACG	-			P-0007127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	327	697	0	ENST00000269305.4:c.328_331delCGTC	p.Arg110TrpfsTer12	p.R110Wfs*12	ENST00000269305	NM_001126112.2	110	CGTCtg/tg						NEWRECORD																																																																									
TNFAIP3	7128	MSKCC	GRCh37	6	138201288	138201288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	125	556	1	ENST00000237289.4:c.1987G>A	p.Gly663Ser	p.G663S	ENST00000237289	NM_001270507.1	663	Ggc/Agc						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2136771	2136771	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	307	859	0	ENST00000219476.3:c.4888G>C	p.Val1630Leu	p.V1630L	ENST00000219476	NM_000548.3	1630	Gtg/Ctg						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29587424	29587424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	61	547	0	ENST00000358273.4:c.4468G>A	p.Asp1490Asn	p.D1490N	ENST00000358273	NM_001042492.2	1490	Gat/Aat						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	98	262	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180048602	180048602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	79	195	2	ENST00000261937.6:c.1960G>A	p.Glu654Lys	p.E654K	ENST00000261937	NM_182925.4	654	Gaa/Aaa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106504	27106504	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	116	449	1	ENST00000324856.7:c.6115C>T	p.Gln2039Ter	p.Q2039*	ENST00000324856	NM_006015.4	2039	Caa/Taa						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47162528	47162528	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	38	269	0	ENST00000409792.3:c.3598G>T	p.Glu1200Ter	p.E1200*	ENST00000409792	NM_014159.6	1200	Gaa/Taa						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47164943	47164943	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0009198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	43	261	0	ENST00000409792.3:c.1183A>T	p.Arg395Ter	p.R395*	ENST00000409792	NM_014159.6	395	Aga/Tga						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061406	38061406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	78	242	0	ENST00000250448.2:c.583G>A	p.Glu195Lys	p.E195K	ENST00000250448	NM_004496.3	195	Gag/Aag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	75	367	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0008967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	38	524	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc						NEWRECORD																																																																									
TMPRSS2	7113	MSKCC	GRCh37	21	42866376	42866376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	46	354	0	ENST00000398585.3:c.256G>A	p.Val86Met	p.V86M	ENST00000398585	NM_001135099.1	86	Gtg/Atg						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145740730	145740730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	27	336	1	ENST00000428558.2:c.1370G>A	p.Gly457Glu	p.G457E	ENST00000428558	NM_004260.3	457	gGg/gAg						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	21	458	0	ENST00000344626.4:c.2729C>G	p.Thr910Arg	p.T910R	ENST00000344626	NM_003072.3	910	aCg/aGg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	93	397	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	105	425	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
RAD54L	8438	MSKCC	GRCh37	1	46743777	46743777	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	54	557	0	ENST00000371975.4:c.2067G>C	p.Gln689His	p.Q689H	ENST00000371975	NM_003579.3	689	caG/caC						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70119779	70119779	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	149	637	0	ENST00000245479.2:c.781G>T	p.Glu261Ter	p.E261*	ENST00000245479	NM_000346.3	261	Gag/Tag						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266028	41266420	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGT	GAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGT	-			P-0006778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	106	460	0	ENST00000349496.5:c.29_242-21del		p.X10_splice	ENST00000349496	NM_001904.3	10							NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0009635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1043	225	417	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	129	475	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0008013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	81	331	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
GSK3B	2932	MSKCC	GRCh37	3	119582302	119582302	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	73	426	0	ENST00000316626.5:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000316626		367	Cga/Tga						NEWRECORD																																																																									
FGF3	2248	MSKCC	GRCh37	11	69625168	69625168	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	84	489	1	ENST00000334134.2:c.625C>T	p.Arg209Ter	p.R209*	ENST00000334134	NM_005247.2	209	Cga/Tga						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66765122	66765122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	118	252	0	ENST00000374690.3:c.134C>T	p.Ala45Val	p.A45V	ENST00000374690	NM_000044.3	45	gCg/gTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0005436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	62	482	1	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56434891	56434891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	82	546	0	ENST00000407977.2:c.2246C>T	p.Ser749Phe	p.S749F	ENST00000407977		749	tCt/tTt						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	33	261	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0009355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	25	194	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5223203	5223203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	22	295	0	ENST00000357368.4:c.2600G>A	p.Arg867His	p.R867H	ENST00000357368	NM_002850.3	867	cGc/cAc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0007681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1362	223	342	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0007681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	669	332	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149460417	149460417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	231	355	0	ENST00000286301.3:c.220G>A	p.Ala74Thr	p.A74T	ENST00000286301	NM_005211.3	74	Gct/Act						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243800978	243800978	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	346	413	0	ENST00000263826.5:c.496C>T	p.Arg166Ter	p.R166*	ENST00000263826	NM_005465.4	166	Cga/Tga						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7119479	7119479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	237	382	1	ENST00000302850.5:c.3775G>A	p.Asp1259Asn	p.D1259N	ENST00000302850	NM_000208.2	1259	Gac/Aac						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	190	478	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	146	386	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	184	447	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0007128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	130	389	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55133805	55133805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	135	532	2	ENST00000257290.5:c.1018C>T	p.Arg340Trp	p.R340W	ENST00000257290	NM_006206.4	340	Cgg/Tgg						NEWRECORD																																																																									
BCL2L11	10018	MSKCC	GRCh37	2	111921774	111921774	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150291943		P-0007128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	47	450	0	ENST00000393256.3:c.563G>A	p.Arg188His	p.R188H	ENST00000393256	NM_006538.4	188	cGt/cAt						NEWRECORD																																																																									
VEGFA	7422	MSKCC	GRCh37	6	43748522	43748522	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150806902		P-0007128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	235	674	4	ENST00000523873.1:c.476G>A	p.Arg159Gln	p.R159Q	ENST00000523873		159	cGg/cAg						NEWRECORD																																																																									
RHEB	6009	MSKCC	GRCh37	7	151188049	151188049	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	75	643	0	ENST00000262187.5:c.104A>G	p.Tyr35Cys	p.Y35C	ENST00000262187	NM_005614.3	35	tAc/tGc						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971157	21971157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	12	136	0	ENST00000361570.3:c.367C>T	p.Arg123Cys	p.R123C	ENST00000361570	NM_058195.3	123	Cgc/Tgc						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114710564	114710564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	276	735	2	ENST00000543371.1:c.49G>A	p.Glu17Lys	p.E17K	ENST00000543371	NM_001198531.1	17	Gaa/Aaa						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133238173	133238173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	226	557	0	ENST00000320574.5:c.2804G>A	p.Gly935Glu	p.G935E	ENST00000320574	NM_006231.2	935	gGg/gAg						NEWRECORD																																																																									
AXL	558	MSKCC	GRCh37	19	41743921	41743921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	150	528	0	ENST00000301178.4:c.856C>A	p.Gln286Lys	p.Q286K	ENST00000301178	NM_021913.4	286	Caa/Aaa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	46	616	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	57	657	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12011200	12011200	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	29	479	0	ENST00000353533.5:c.607G>T	p.Glu203Ter	p.E203*	ENST00000353533	NM_003010.3	203	Gaa/Taa						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5212492	5212492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	42	591	0	ENST00000357368.4:c.4625G>A	p.Ser1542Asn	p.S1542N	ENST00000357368	NM_002850.3	1542	aGt/aAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578175	7578233	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ACCTCAGGCGGCTCATAGGGCACCACCACACTATGTCGAAAAGTGTTTCTGTCATCCAA	ACCTCAGGCGGCTCATAGGGCACCACCACACTATGTCGAAAAGTGTTTCTGTCATCCAA	-			P-0008136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	63	762	0	ENST00000269305.4:c.616_672+2del		p.X206_splice	ENST00000269305	NM_001126112.2	206							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	47	315	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1023835002		P-0007408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	74	320	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139404399	139404399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	45	348	0	ENST00000277541.6:c.2755G>A	p.Gly919Arg	p.G919R	ENST00000277541	NM_017617.3	919	Ggg/Agg						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47034441	47034441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	80	469	1	ENST00000329236.7:c.295G>A	p.Val99Ile	p.V99I	ENST00000329236	NM_001204466.1	99	Gtc/Atc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0006202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	520	387	1	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307							NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134851645	134851645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	318	468	0	ENST00000398015.3:c.1051C>T	p.Arg351Trp	p.R351W	ENST00000398015	NM_004441.4	351	Cgg/Tgg						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41572404	41572404	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	307	494	0	ENST00000263253.7:c.4933C>T	p.Arg1645Ter	p.R1645*	ENST00000263253	NM_001429.3	1645	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112111435	112111435	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0006202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	92	248	0	ENST00000257430.4:c.531+1G>T		p.X177_splice	ENST00000257430	NM_000038.5	177							NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152265561	152265561	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	186	320	0	ENST00000206249.3:c.1014T>G	p.Ser338Arg	p.S338R	ENST00000206249	NM_000125.3	338	agT/agG						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87636264	87636264	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	437	588	0	ENST00000277120.3:c.2429C>G	p.Pro810Arg	p.P810R	ENST00000277120		810	cCc/cGc						NEWRECORD																																																																									
YAP1	10413	MSKCC	GRCh37	11	101981646	101981646	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	43	58	0	ENST00000282441.5:c.67C>A	p.Pro23Thr	p.P23T	ENST00000282441	NM_001130145.2	23	Ccc/Acc						NEWRECORD																																																																									
H3F3C	440093	MSKCC	GRCh37	12	31944967	31944967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	363	519	0	ENST00000340398.3:c.134C>T	p.Thr45Ile	p.T45I	ENST00000340398	NM_001013699.2	45	aCc/aTc						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28608074	28608074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	266	597	0	ENST00000241453.7:c.1892G>A	p.Gly631Glu	p.G631E	ENST00000241453	NM_004119.2	631	gGa/gAa						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49039340	49039340	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	206	391	0	ENST00000267163.4:c.2326-1G>A		p.X776_splice	ENST00000267163	NM_000321.2	776							NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	41961751	41961751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	292	727	0	ENST00000219905.7:c.659G>A	p.Gly220Asp	p.G220D	ENST00000219905	NM_001164273.1	220	gGc/gAc						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48954211	48954211	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	181	368	0	ENST00000267163.4:c.1415del	p.Asn472IlefsTer6	p.N472Ifs*6	ENST00000267163	NM_000321.2	471	cAa/ca						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89851344	89851344	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	62	393	0	ENST00000389301.3:c.1388A>G	p.His463Arg	p.H463R	ENST00000389301	NM_000135.2	463	cAt/cGt						NEWRECORD																																																																									
AURKA	6790	MSKCC	GRCh37	20	54945263	54945263	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0007625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	92	272	0	ENST00000312783.6:c.1163C>G	p.Ser388Ter	p.S388*	ENST00000312783	NM_198436.1	388	tCa/tGa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	347	458	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	125	390	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061261	38061264	+	missense_variant	Missense_Mutation	ONP	TAGG	TAGG	GAGC			P-0005360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	491	473	0	ENST00000250448.2:c.725_728delinsGCTC	p.Ser242_Tyr243delinsCysSer	p.S242_Y243delinsCS	ENST00000250448	NM_004496.3	242	tCCTAc/tGCTCc						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187628763	187628763	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	33	417	0	ENST00000441802.2:c.2219A>C	p.Asn740Thr	p.N740T	ENST00000441802	NM_005245.3	740	aAc/aCc						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176637724	176637724	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	56	378	0	ENST00000439151.2:c.2324A>T	p.Gln775Leu	p.Q775L	ENST00000439151	NM_022455.4	775	cAa/cTa						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152382214	152382214	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	212	418	0	ENST00000206249.3:c.1324G>C	p.Gly442Arg	p.G442R	ENST00000206249	NM_000125.3	442	Gga/Cga						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64575049	64575049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	214	397	1	ENST00000337652.1:c.773C>T	p.Ser258Leu	p.S258L	ENST00000337652	NM_130803.2	258	tCg/tTg						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7184583	7184583	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	61	181	0	ENST00000302850.5:c.718del	p.Leu240TrpfsTer42	p.L240Wfs*42	ENST00000302850	NM_000208.2	240	Ctg/tg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55241677	55241677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	865	421	0	ENST00000275493.2:c.2125G>A	p.Glu709Lys	p.E709K	ENST00000275493	NM_005228.3	709	Gaa/Aaa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0006003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	831	416	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913384		P-0006003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	525	189	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135802688	135802688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	211	322	0	ENST00000298552.3:c.110G>A	p.Arg37His	p.R37H	ENST00000298552	NM_001162426.1	37	cGt/cAt						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187532741	187532741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	249	457	0	ENST00000441802.2:c.9652G>A	p.Val3218Ile	p.V3218I	ENST00000441802	NM_005245.3	3218	Gta/Ata						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55370958	55370958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	219	445	1	ENST00000297316.4:c.260C>T	p.Ala87Val	p.A87V	ENST00000297316	NM_022454.3	87	gCg/gTg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25368457	25368457	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	148	273	0	ENST00000256078.4:c.488T>G	p.Ile163Ser	p.I163S	ENST00000256078	NM_033360.2	163	aTc/aGc						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10254611	10254611	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	174	356	0	ENST00000340748.4:c.2899G>C	p.Asp967His	p.D967H	ENST00000340748		967	Gac/Cac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	35	229	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0006617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	100	295	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0006617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	41	240	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	165	399	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	114	535	0	ENST00000361445.4:c.6644C>T	p.Ser2215Phe	p.S2215F	ENST00000361445	NM_004958.3	2215	tCt/tTt						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180038416	180038416	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	248	616	0	ENST00000261937.6:c.3601C>G	p.Gln1201Glu	p.Q1201E	ENST00000261937	NM_182925.4	1201	Cag/Gag						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9546599	9546599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	137	483	0	ENST00000353224.5:c.1423G>A	p.Val475Ile	p.V475I	ENST00000353224	NM_177990.2	475	Gtt/Att						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63409901	63409901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	257	383	1	ENST00000330258.3:c.3266G>A	p.Arg1089Lys	p.R1089K	ENST00000330258	NM_152424.3	1089	aGg/aAg						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47164211	47164228	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	CGGACTTAAAAATAGGCA	CGGACTTAAAAATAGGCA	-			P-0006199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	158	284	0	ENST00000409792.3:c.1898_1915del	p.Leu633_Glu639delinsTer	p.L633_E639delins*	ENST00000409792	NM_014159.6	633	tTGCCTATTTTTAAGTCCGaa/taa						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8100762	8100762	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	82	344	0	ENST00000346208.3:c.737del	p.Gly246AlafsTer19	p.G246Afs*19	ENST00000346208		246	Ggc/gc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	106	471	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0004844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	78	390	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112137081	112137081	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0004844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	95	459	1	ENST00000257430.4:c.834+1G>A		p.X278_splice	ENST00000257430	NM_000038.5	278							NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1280384	1280384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	158	429	0	ENST00000310581.5:c.1839G>T	p.Arg613Ser	p.R613S	ENST00000310581	NM_198253.2	613	agG/agT						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114917779	114917779	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0004844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	118	449	0	ENST00000543371.1:c.1270-1G>A		p.X424_splice	ENST00000543371	NM_001198531.1	424							NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56488228	56488228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	306	452	0	ENST00000267101.3:c.1747C>T	p.Pro583Ser	p.P583S	ENST00000267101	NM_001982.3	583	Ccc/Tcc						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72992375	72992375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1324	218	751	0	ENST00000268489.5:c.1670C>T	p.Ser557Phe	p.S557F	ENST00000268489	NM_006885.3	557	tCc/tTc						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66943532	66943532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143040492		P-0004844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	300	276	1	ENST00000374690.3:c.2612C>T	p.Ala871Val	p.A871V	ENST00000374690	NM_000044.3	871	gCg/gTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0007701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	21	412	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0007345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	280	383	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
PDCD1	5133	MSKCC	GRCh37	2	242794899	242794899	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	25	374	1	ENST00000334409.5:c.310C>A	p.Arg104Ser	p.R104S	ENST00000334409	NM_005018.2	104	Cgt/Agt						NEWRECORD																																																																									
MRE11A	4361	MSKCC	GRCh37	11	94180384	94180384	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0007345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	66	345	0	ENST00000323929.3:c.1783+1G>T		p.X595_splice	ENST00000323929	NM_005591.3	595							NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49444486	49444486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	63	213	0	ENST00000301067.7:c.2885G>T	p.Gly962Val	p.G962V	ENST00000301067	NM_003482.3	962	gGt/gTt						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59760727	59760727	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	105	516	0	ENST00000259008.2:c.3680A>T	p.His1227Leu	p.H1227L	ENST00000259008	NM_032043.2	1227	cAt/cTt						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15298770	15298770	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	34	362	0	ENST00000263388.2:c.1528G>T	p.Glu510Ter	p.E510*	ENST00000263388	NM_000435.2	510	Gaa/Taa						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70344011	70344011	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0007345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	58	273	0	ENST00000374080.3:c.1747G>T	p.Asp583Tyr	p.D583Y	ENST00000374080		583	Gac/Tac						NEWRECORD																																																																									
PMS1	5378	MSKCC	GRCh37	2	190670474	190670475	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	T			P-0007345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	34	349	0	ENST00000441310.2:c.412_413delinsT	p.Gly138PhefsTer6	p.G138Ffs*6	ENST00000441310	NM_000534.4	138	GGt/Tt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0004874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	154	434	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47147578	47147578	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	108	229	0	ENST00000409792.3:c.4748T>G	p.Val1583Gly	p.V1583G	ENST00000409792	NM_014159.6	1583	gTa/gGa						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30675450	30675450	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	164	371	0	ENST00000376406.3:c.2906C>G	p.Pro969Arg	p.P969R	ENST00000376406	NM_014641.2	969	cCt/cGt						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2951931	2951931	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	62	268	0	ENST00000396946.4:c.3020-1G>A		p.X1007_splice	ENST00000396946	NM_032415.4	1007							NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64573234	64573234	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	187	357	0	ENST00000337652.1:c.1073A>G	p.Tyr358Cys	p.Y358C	ENST00000337652	NM_130803.2	358	tAc/tGc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41100980	41100980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	244	406	0	ENST00000373198.4:c.1376G>A	p.Arg459Gln	p.R459Q	ENST00000373198	NM_133170.3	459	cGg/cAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912660		P-0006544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	271	434	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa						NEWRECORD																																																																									
HIST1H3A	8350	MSKCC	GRCh37	6	26020808	26020808	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1763	416	722	0	ENST00000357647.3:c.91C>G	p.Pro31Ala	p.P31A	ENST00000357647	NM_003529.2	31	Ccg/Gcg						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48936984	48937002	+	frameshift_variant	Frame_Shift_Del	DEL	GAACACCCAGGCGAGGTCA	GAACACCCAGGCGAGGTCA	-			P-0006544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	236	365	0	ENST00000267163.4:c.757_775del	p.Pro253GlyfsTer5	p.P253Gfs*5	ENST00000267163	NM_000321.2	251	cGAACACCCAGGCGAGGTCAg/cg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89624297	89624297	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs797044910		P-0005735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	172	262	0	ENST00000371953.3:c.71A>G	p.Asp24Gly	p.D24G	ENST00000371953	NM_000314.4	24	gAc/gGc						NEWRECORD																																																																									
KLF4	9314	MSKCC	GRCh37	9	110250365	110250365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	535	823	0	ENST00000374672.4:c.310G>T	p.Asp104Tyr	p.D104Y	ENST00000374672	NM_004235.4	104	Gac/Tac						NEWRECORD																																																																									
SUFU	51684	MSKCC	GRCh37	10	104359255	104359255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	99	576	0	ENST00000369902.3:c.976C>T	p.Pro326Ser	p.P326S	ENST00000369902	NM_016169.3	326	Cca/Tca						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133218426	133218426	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	51	350	0	ENST00000320574.5:c.5185C>A	p.Leu1729Met	p.L1729M	ENST00000320574	NM_006231.2	1729	Ctg/Atg						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15983722	15983722	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	129	226	1	ENST00000268712.3:c.3400G>A	p.Gly1134Ser	p.G1134S	ENST00000268712	NM_006311.3	1134	Ggt/Agt						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10246474	10246474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	50	558	0	ENST00000340748.4:c.4663C>T	p.Arg1555Cys	p.R1555C	ENST00000340748		1555	Cgc/Tgc						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70357233	70357233	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0005735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	22	420	0	ENST00000374080.3:c.5748G>C	p.Gln1916His	p.Q1916H	ENST00000374080		1916	caG/caC						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67591118	67591245	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCCAGCTGAGAAAGACGAGAGACCAATACTTGATGTAAGTATTTGAAATGGAATCCTATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTC	ATCCAGCTGAGAAAGACGAGAGACCAATACTTGATGTAAGTATTTGAAATGGAATCCTATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTC	-			P-0005735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	103	353	1	ENST00000274335.5:c.1712_1746-2del		p.X571_splice	ENST00000274335		571							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577003	7577039	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGG	TGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGG	-			P-0005735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	227	379	0	ENST00000269305.4:c.899_919+16del		p.X300_splice	ENST00000269305	NM_001126112.2	300							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	376	338	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120612013	120612014	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0008848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	10	40	2	ENST00000256646.2:c.7_8delinsTT	p.Ala3Phe	p.A3F	ENST00000256646	NM_024408.3	3	GCc/TTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs879253911		P-0008848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	261	193	1	ENST00000269305.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000269305	NM_001126112.2	180	Gag/Aag						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52584491	52584491	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	439	393	0	ENST00000394830.3:c.4522G>C	p.Glu1508Gln	p.E1508Q	ENST00000394830	NM_018313.4	1508	Gaa/Caa						NEWRECORD																																																																									
GATA2	2624	MSKCC	GRCh37	3	128204938	128204938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	1022	466	0	ENST00000341105.2:c.503C>A	p.Ser168Tyr	p.S168Y	ENST00000341105	NM_032638.4	168	tCc/tAc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151900045	151900045	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	501	408	0	ENST00000262189.6:c.4066G>C	p.Glu1356Gln	p.E1356Q	ENST00000262189	NM_170606.2	1356	Gaa/Caa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0009861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	209	398	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0009861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	147	391	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	65	399	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0009265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	55	358	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73346338	73346338	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	77	450	1	ENST00000377767.4:c.1462G>T	p.Asp488Tyr	p.D488Y	ENST00000377767	NM_014953.3	488	Gat/Tat						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	51	466	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0008754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1113	74	569	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc						NEWRECORD																																																																									
FGFR1	2260	MSKCC	GRCh37	8	38272143	38272143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	42	387	0	ENST00000425967.3:c.2075G>A	p.Arg692Gln	p.R692Q	ENST00000425967	NM_001174067.1	692	cGa/cAa						NEWRECORD																																																																									
CCND2	894	MSKCC	GRCh37	12	4409101	4409101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	67	469	0	ENST00000261254.3:c.796C>T	p.Arg266Cys	p.R266C	ENST00000261254	NM_001759.3	266	Cgt/Tgt						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42795794	42795794	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1187	65	511	0	ENST00000575354.2:c.2786del	p.Pro929LeufsTer17	p.P929Lfs*17	ENST00000575354	NM_015125.3	928	gCc/gc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	72	636	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153259043	153259043	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	242	1075	0	ENST00000281708.4:c.772G>C	p.Asp258His	p.D258H	ENST00000281708	NM_033632.3	258	Gat/Cat						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	94120666	94120666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	181	1512	1	ENST00000369303.4:c.385G>A	p.Glu129Lys	p.E129K	ENST00000369303	NM_004440.3	129	Gaa/Aaa						NEWRECORD																																																																									
SH2B3	10019	MSKCC	GRCh37	12	111856384	111856384	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	57	322	0	ENST00000341259.2:c.435C>G	p.Ile145Met	p.I145M	ENST00000341259	NM_005475.2	145	atC/atG						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2106696	2106696	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	178	1127	0	ENST00000219476.3:c.700G>C	p.Glu234Gln	p.E234Q	ENST00000219476	NM_000548.3	234	Gag/Cag						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1226520	1226520	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	461	1122	0	ENST00000326873.7:c.1176G>C	p.Met392Ile	p.M392I	ENST00000326873	NM_000455.4	392	atG/atC						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5214687	5214687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	157	1110	0	ENST00000357368.4:c.4379C>T	p.Ala1460Val	p.A1460V	ENST00000357368	NM_002850.3	1460	gCg/gTg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49426997	49426997	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	97	826	1	ENST00000301067.7:c.11491del	p.Gln3831SerfsTer50	p.Q3831Sfs*50	ENST00000301067	NM_003482.3	3831	Cag/ag						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	41961964	41961964	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	163	1550	0	ENST00000219905.7:c.874del	p.Val292SerfsTer37	p.V292Sfs*37	ENST00000219905	NM_001164273.1	291	cGg/cg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578359	7578375	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCAGCTGCTCACCATCG	CCAGCTGCTCACCATCG	-			P-0004720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	211	760	0	ENST00000269305.4:c.555_559+12del		p.X185_splice	ENST00000269305	NM_001126112.2	185							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0007588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	208	619	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0007588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	47	225	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89390120	89390120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	116	468	0	ENST00000336596.2:c.869G>T	p.Cys290Phe	p.C290F	ENST00000336596	NM_005233.5	290	tGc/tTc						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59763431	59763431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	99	444	0	ENST00000259008.2:c.2671G>C	p.Val891Leu	p.V891L	ENST00000259008	NM_032043.2	891	Gtt/Ctt						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45374941	45374941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	156	498	0	ENST00000262160.6:c.902G>A	p.Gly301Asp	p.G301D	ENST00000262160	NM_005901.5	301	gGc/gAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0006744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	349	368	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0006744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	124	255	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88472663	88472663	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0006744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	70	261	0	ENST00000360948.2:c.1892C>A	p.Ala631Asp	p.A631D	ENST00000360948	NM_001012338.2	631	gCc/gAc						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89352556	89352556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	79	509	0	ENST00000301030.4:c.783G>C	p.Gln261His	p.Q261H	ENST00000301030	NM_001256183.1	261	caG/caC						NEWRECORD																																																																									
PPM1D	8493	MSKCC	GRCh37	17	58740840	58740840	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149137187		P-0006744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1691	278	722	0	ENST00000305921.3:c.1745G>A	p.Arg582His	p.R582H	ENST00000305921	NM_003620.3	582	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173451	112173451	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	326	396	2	ENST00000257430.4:c.2162del	p.Gly721GlufsTer6	p.G721Efs*6	ENST00000257430	NM_000038.5	720	atG/at						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10597452	10597452	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	167	491	0	ENST00000171111.5:c.1751A>G	p.Tyr584Cys	p.Y584C	ENST00000171111	NM_203500.1	584	tAc/tGc						NEWRECORD																																																																									
JUN	3725	MSKCC	GRCh37	1	59248700	59248700	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	156	467	0	ENST00000371222.2:c.43A>G	p.Asn15Asp	p.N15D	ENST00000371222	NM_002228.3	15	Aac/Gac						NEWRECORD																																																																									
FUBP1	8880	MSKCC	GRCh37	1	78414881	78414881	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	59	456	0	ENST00000370768.2:c.1885A>G	p.Thr629Ala	p.T629A	ENST00000370768	NM_003902.3	629	Aca/Gca						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67588167	67588167	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	92	272	0	ENST00000274335.5:c.997T>C	p.Trp333Arg	p.W333R	ENST00000274335		333	Tgg/Cgg						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857011	9857011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	302	565	0	ENST00000330684.3:c.4390G>A	p.Val1464Ile	p.V1464I	ENST00000330684	NM_001134407.1	1464	Gtt/Att						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	198	395	1	ENST00000269305.4:c.707A>C	p.Tyr236Ser	p.Y236S	ENST00000269305	NM_001126112.2	236	tAc/tCc						NEWRECORD																																																																									
SOX2	6657	MSKCC	GRCh37	3	181430202	181430202	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	34	98	0	ENST00000325404.1:c.59del	p.Gly20AlafsTer26	p.G20Afs*26	ENST00000325404	NM_003106.3	18	tcG/tc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0009490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	351	306	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc						NEWRECORD																																																																									
DAXX	1616	MSKCC	GRCh37	6	33289678	33289678	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	66	229	0	ENST00000374542.5:c.25G>T	p.Val9Leu	p.V9L	ENST00000374542	NM_001141970.1	9	Gtg/Ttg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0005700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	114	540	1	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0005700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	114	559	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600417	10600417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	164	695	1	ENST00000171111.5:c.1438G>T	p.Gly480Trp	p.G480W	ENST00000171111	NM_203500.1	480	Ggg/Tgg						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25458647	25458647	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	104	617	0	ENST00000264709.3:c.2526G>T	p.Gln842His	p.Q842H	ENST00000264709	NM_175629.2	842	caG/caT						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49448470	49448470	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	120	562	0	ENST00000301067.7:c.241G>T	p.Glu81Ter	p.E81*	ENST00000301067	NM_003482.3	81	Gag/Tag						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220428	1220428	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	138	700	0	ENST00000326873.7:c.521A>T	p.His174Leu	p.H174L	ENST00000326873	NM_000455.4	174	cAc/cTc						NEWRECORD																																																																									
EIF1AX	1964	MSKCC	GRCh37	X	20156731	20156731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	612	758	1	ENST00000379607.5:c.26G>T	p.Gly9Val	p.G9V	ENST00000379607	NM_001412.3	9	gGt/gTt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27092813	27092814	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0008354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	345	699	0	ENST00000324856.7:c.2834_2835del	p.Gly945AlafsTer61	p.G945Afs*61	ENST00000324856	NM_006015.4	945	gGA/g						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	235	320	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	95	125	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115112154	115112154	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	105	455	4	ENST00000257566.3:c.1586del	p.Gly529AlafsTer103	p.G529Afs*103	ENST00000257566	NM_016569.3	529	gGc/gc						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	115	468	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	22	93	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt						NEWRECORD																																																																									
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	67	271	0	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	62	234	0	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176638491	176638491	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	97	361	0	ENST00000439151.2:c.3091C>T	p.Arg1031Ter	p.R1031*	ENST00000439151	NM_022455.4	1031	Cga/Tga						NEWRECORD																																																																									
DAXX	1616	MSKCC	GRCh37	6	33287520	33287520	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141395832		P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	48	228	0	ENST00000374542.5:c.1577G>A	p.Arg526His	p.R526H	ENST00000374542	NM_001141970.1	526	cGc/cAc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	32	280	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156834552	156834552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	81	434	2	ENST00000524377.1:c.320C>T	p.Ala107Val	p.A107V	ENST00000524377	NM_002529.3	107	gCg/gTg						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			67	15	65	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70333266	70333266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	57	417	0	ENST00000373644.4:c.1171G>A	p.Glu391Lys	p.E391K	ENST00000373644	NM_030625.2	391	Gag/Aag						NEWRECORD																																																																									
HIST1H3B	8358	MSKCC	GRCh37	6	26032045	26032045	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	165	826	0	ENST00000244661.2:c.244G>C	p.Asp82His	p.D82H	ENST00000244661	NM_003537.3	82	Gat/Cat						NEWRECORD																																																																									
ERRFI1	54206	MSKCC	GRCh37	1	8073525	8073525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	133	700	0	ENST00000377482.5:c.1134C>A	p.Cys378Ter	p.C378*	ENST00000377482	NM_018948.3	378	tgC/tgA						NEWRECORD																																																																									
PIK3CD	5293	MSKCC	GRCh37	1	9777020	9777020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	103	431	0	ENST00000377346.4:c.784A>G	p.Ile262Val	p.I262V	ENST00000377346	NM_005026.3	262	Atc/Gtc						NEWRECORD																																																																									
RAD54L	8438	MSKCC	GRCh37	1	46715676	46715676	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	112	381	0	ENST00000371975.4:c.95C>A	p.Pro32His	p.P32H	ENST00000371975	NM_003579.3	32	cCt/cAt						NEWRECORD																																																																									
CDKN2C	1031	MSKCC	GRCh37	1	51439853	51439853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	36	100	0	ENST00000262662.1:c.418G>A	p.Ala140Thr	p.A140T	ENST00000262662		140	Gcc/Acc						NEWRECORD																																																																									
BCL2L11	10018	MSKCC	GRCh37	2	111907654	111907654	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141962978		P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	107	460	0	ENST00000393256.3:c.428G>A	p.Arg143His	p.R143H	ENST00000393256	NM_006538.4	143	cGc/cAc						NEWRECORD																																																																									
PMS1	5378	MSKCC	GRCh37	2	190719073	190719073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	97	191	2	ENST00000441310.2:c.1075G>A	p.Val359Ile	p.V359I	ENST00000441310	NM_000534.4	359	Gtt/Att						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30691881	30691881	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	62	277	1	ENST00000359013.4:c.458A>G	p.Lys153Arg	p.K153R	ENST00000359013	NM_001024847.2	153	aAg/aGg						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47162317	47162317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	70	244	1	ENST00000409792.3:c.3809C>T	p.Thr1270Met	p.T1270M	ENST00000409792	NM_014159.6	1270	aCg/aTg						NEWRECORD																																																																									
MITF	4286	MSKCC	GRCh37	3	69928374	69928374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	105	301	0	ENST00000352241.4:c.194G>A	p.Arg65His	p.R65H	ENST00000352241	NM_198159.2	65	cGt/cAt						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134967276	134967276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	100	404	0	ENST00000398015.3:c.2615C>T	p.Ala872Val	p.A872V	ENST00000398015	NM_004441.4	872	gCg/gTg						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106158313	106158313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	113	375	0	ENST00000380013.4:c.3214G>A	p.Ala1072Thr	p.A1072T	ENST00000380013	NM_001127208.2	1072	Gca/Aca						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38963022	38963022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	97	269	1	ENST00000357387.3:c.1522C>T	p.Arg508Trp	p.R508W	ENST00000357387	NM_152756.3	508	Cgg/Tgg						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67590986	67590986	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	58	146	0	ENST00000274335.5:c.1579A>G	p.Asn527Asp	p.N527D	ENST00000274335		527	Aat/Gat						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50467700	50467700	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	80	415	0	ENST00000331340.3:c.935A>G	p.Asp312Gly	p.D312G	ENST00000331340	NM_006060.4	312	gAc/gGc						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98239932	98239932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	86	263	0	ENST00000331920.6:c.1400G>A	p.Gly467Asp	p.G467D	ENST00000331920	NM_000264.3	467	gGt/gAt						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101900273	101900273	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	60	362	0	ENST00000374994.4:c.707C>A	p.Ser236Tyr	p.S236Y	ENST00000374994	NM_004612.2	236	tCt/tAt						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135801065	135801065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	75	427	1	ENST00000298552.3:c.272C>T	p.Ser91Leu	p.S91L	ENST00000298552	NM_001162426.1	91	tCg/tTg						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139412238	139412238	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	38	494	1	ENST00000277541.6:c.1407C>G	p.Asp469Glu	p.D469E	ENST00000277541	NM_017617.3	469	gaC/gaG						NEWRECORD																																																																									
EGFL7	51162	MSKCC	GRCh37	9	139564426	139564426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	32	341	1	ENST00000308874.7:c.374G>A	p.Cys125Tyr	p.C125Y	ENST00000308874		125	tGc/tAc						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	464407	464407	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	69	266	0	ENST00000399788.2:c.787A>C	p.Thr263Pro	p.T263P	ENST00000399788	NM_001042603.1	263	Acc/Ccc						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49425796	49425796	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	67	211	0	ENST00000301067.7:c.12692T>G	p.Leu4231Arg	p.L4231R	ENST00000301067	NM_003482.3	4231	cTg/cGg						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32915013	32915013	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	134	646	0	ENST00000380152.3:c.6521T>G	p.Val2174Gly	p.V2174G	ENST00000380152		2174	gTt/gGt						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73336137	73336137	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	140	388	2	ENST00000377767.4:c.2266T>C	p.Ser756Pro	p.S756P	ENST00000377767	NM_014953.3	756	Tct/Cct						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110435010	110435010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	13	143	0	ENST00000375856.3:c.3391C>T	p.Arg1131Cys	p.R1131C	ENST00000375856	NM_003749.2	1131	Cgc/Tgc						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99491810	99491810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	40	370	1	ENST00000268035.6:c.3595G>A	p.Gly1199Arg	p.G1199R	ENST00000268035	NM_000875.3	1199	Ggg/Agg						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	10032245	10032245	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	36	299	0	ENST00000330684.3:c.578A>G	p.Asn193Ser	p.N193S	ENST00000330684	NM_001134407.1	193	aAc/aGc						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23641370	23641370	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	85	676	0	ENST00000261584.4:c.2105T>C	p.Ile702Thr	p.I702T	ENST00000261584	NM_024675.3	702	aTa/aCa						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72993653	72993653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	126	645	1	ENST00000268489.5:c.392G>T	p.Gly131Val	p.G131V	ENST00000268489	NM_006885.3	131	gGg/gTg						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89348128	89348128	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	80	950	1	ENST00000301030.4:c.4822A>T	p.Met1608Leu	p.M1608L	ENST00000301030	NM_001256183.1	1608	Atg/Ttg						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89348580	89348580	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	54	1083	0	ENST00000301030.4:c.4370A>T	p.Lys1457Ile	p.K1457I	ENST00000301030	NM_001256183.1	1457	aAa/aTa						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15938195	15938195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	116	485	0	ENST00000268712.3:c.7019C>A	p.Pro2340His	p.P2340H	ENST00000268712	NM_006311.3	2340	cCt/cAt						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29676141	29676141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	14	197	0	ENST00000358273.4:c.7193A>G	p.Tyr2398Cys	p.Y2398C	ENST00000358273	NM_001042492.2	2398	tAc/tGc						NEWRECORD																																																																									
RAD51D	5892	MSKCC	GRCh37	17	33428299	33428299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	104	387	1	ENST00000335858.7:c.488G>A	p.Arg163Gln	p.R163Q	ENST00000335858	NM_133629.2	163	cGg/cAg						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37618703	37618703	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	140	568	0	ENST00000447079.4:c.379C>T	p.Gln127Ter	p.Q127*	ENST00000447079	NM_015083.1	127	Cag/Tag						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37687283	37687283	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	33	397	1	ENST00000447079.4:c.4187A>G	p.Gln1396Arg	p.Q1396R	ENST00000447079	NM_015083.1	1396	cAg/cGg						NEWRECORD																																																																									
STAT5B	6777	MSKCC	GRCh37	17	40376865	40376865	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	98	637	0	ENST00000293328.3:c.307A>G	p.Met103Val	p.M103V	ENST00000293328	NM_012448.3	103	Atg/Gtg						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41223087	41223087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	102	484	0	ENST00000357654.3:c.4844C>T	p.Ala1615Val	p.A1615V	ENST00000357654	NM_007294.3	1615	gCt/gTt						NEWRECORD																																																																									
TCF3	6929	MSKCC	GRCh37	19	1619371	1619371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	149	546	1	ENST00000344749.5:c.1270G>A	p.Ala424Thr	p.A424T	ENST00000344749	NM_001136139.2	424	Gcg/Acg						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2217034	2217034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	101	456	0	ENST00000398665.3:c.2489C>T	p.Pro830Leu	p.P830L	ENST00000398665	NM_032482.2	830	cCg/cTg						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10265274	10265274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	81	317	0	ENST00000340748.4:c.1772C>T	p.Thr591Met	p.T591M	ENST00000340748		591	aCg/aTg						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15291890	15291890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	78	403	0	ENST00000263388.2:c.2876G>A	p.Cys959Tyr	p.C959Y	ENST00000263388	NM_000435.2	959	tGc/tAc						NEWRECORD																																																																									
SRC	6714	MSKCC	GRCh37	20	36012773	36012773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	21	267	1	ENST00000358208.4:c.217G>A	p.Val73Ile	p.V73I	ENST00000358208		73	Gtc/Atc						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41573608	41573608	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	76	370	0	ENST00000263253.7:c.5893A>G	p.Met1965Val	p.M1965V	ENST00000263253	NM_001429.3	1965	Atg/Gtg						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41574133	41574133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	131	307	0	ENST00000263253.7:c.6418G>A	p.Val2140Ile	p.V2140I	ENST00000263253	NM_001429.3	2140	Gtt/Att						NEWRECORD																																																																									
NCOA3	8202	MSKCC	GRCh37	20	46256341	46256341	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	91	619	0	ENST00000371998.3:c.574del	p.Ser192AlafsTer9	p.S192Afs*9	ENST00000371998		190	cAa/ca						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67591259	67591259	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	37	313	0	ENST00000274335.5:c.1761delA	p.Gly588ValfsTer7	p.G588Vfs*7	ENST00000274335		586	cAa/ca						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39930282	39930282	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	131	354	0	ENST00000378444.4:c.3182del	p.Lys1061SerfsTer52	p.K1061Sfs*52	ENST00000378444	NM_001123385.1	1061	aAg/ag						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	29012359	29012359	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	97	308	0	ENST00000282397.4:c.512del	p.Lys171SerfsTer7	p.K171Sfs*7	ENST00000282397	NM_002019.4	171	aAg/ag						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32907421	32907421	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	92	277	3	ENST00000380152.3:c.1813delA	p.Ile605TyrfsTer9	p.I605Yfs*9	ENST00000380152		602	ggA/gg						NEWRECORD																																																																									
ETV6	2120	MSKCC	GRCh37	12	12038923	12038925	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	101	351	0	ENST00000396373.4:c.1218_1220del	p.Ile407del	p.I407del	ENST00000396373	NM_001987.4	406	ATT/-						NEWRECORD																																																																									
ERRFI1	54206	MSKCC	GRCh37	1	8073616	8073616	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	122	681	0	ENST00000377482.5:c.1043del	p.Pro348ArgfsTer104	p.P348Rfs*104	ENST00000377482	NM_018948.3	348	cCg/cg						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131924551	131924551	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	96	321	0	ENST00000265335.6:c.1228del	p.Thr410LeufsTer5	p.T410Lfs*5	ENST00000265335		408	gcA/gc						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41203123	41203123	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	67	276	0	ENST00000357654.3:c.5289del	p.Leu1764Ter	p.L1764*	ENST00000357654	NM_007294.3	1763	ggG/gg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003925-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			136	133	273	2	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66213922	66213922	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0003925-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			737	108	432	0	ENST00000273854.3:c.2509-1G>T		p.X837_splice	ENST00000273854	NM_004439.5	837							NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68857382	68857382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003925-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	129	366	0	ENST00000261769.5:c.2017C>T	p.Gln673Ter	p.Q673*	ENST00000261769	NM_004360.3	673	Cag/Tag						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70351422	70351422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003925-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	414	335	2	ENST00000374080.3:c.4070G>A	p.Arg1357His	p.R1357H	ENST00000374080		1357	cGc/cAc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	49	402	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15974899	15974899	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	42	616	1	ENST00000268712.3:c.3976C>T	p.Arg1326Ter	p.R1326*	ENST00000268712	NM_006311.3	1326	Cga/Tga						NEWRECORD																																																																									
ZRSR2	8233	MSKCC	GRCh37	X	15841213	15841213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	160	397	1	ENST00000307771.7:c.1297C>T	p.Arg433Cys	p.R433C	ENST00000307771	NM_005089.3	433	Cgc/Tgc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0006067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	129	292	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52441204	52441204	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	103	499	0	ENST00000460680.1:c.566A>T	p.Tyr189Phe	p.Y189F	ENST00000460680	NM_004656.3	189	tAc/tTc						NEWRECORD																																																																									
CDKN1B	1027	MSKCC	GRCh37	12	12870837	12870837	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	84	323	0	ENST00000228872.4:c.64G>T	p.Glu22Ter	p.E22*	ENST00000228872	NM_004064.3	22	Gag/Tag						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56178466	56178473	+	frameshift_variant	Frame_Shift_Del	DEL	GTAACTTT	GTAACTTT	A			P-0006067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	105	605	0	ENST00000399503.3:c.3439_3446delinsA	p.Val1147IlefsTer23	p.V1147Ifs*23	ENST00000399503	NM_005921.1	1147	GTAACTTTt/At						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0009163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	133	357	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0009163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	218	337	0	ENST00000257430.4:c.4128T>A	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taA						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153244139	153244139	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	164	461	0	ENST00000281708.4:c.2018G>C	p.Trp673Ser	p.W673S	ENST00000281708	NM_033632.3	673	tGg/tCg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108128333	108128333	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0009163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	85	267	0	ENST00000278616.4:c.2376G>C	p.Lys792Asn	p.K792N	ENST00000278616	NM_000051.3	792	aaG/aaC						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108216531	108216531	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs28942101		P-0009163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	145	513	0	ENST00000278616.4:c.8480T>G	p.Phe2827Cys	p.F2827C	ENST00000278616	NM_000051.3	2827	tTt/tGt						NEWRECORD																																																																									
ERG	2078	MSKCC	GRCh37	21	39772564	39772564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	62	286	0	ENST00000288319.7:c.677G>A	p.Gly226Asp	p.G226D	ENST00000288319	NM_182918.3	226	gGt/gAt						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15354072	15354080	+	inframe_deletion	In_Frame_Del	DEL	CTGCAGCTG	CTGCAGCTG	-			P-0009163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	44	131	0	ENST00000263377.2:c.2800_2808del	p.Gln934_Gln936del	p.Q934_Q936del	ENST00000263377	NM_058243.2	934	CAGCTGCAG/-						NEWRECORD																																																																									
PIK3CD	5293	MSKCC	GRCh37	1	9783259	9783259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	134	651	3	ENST00000377346.4:c.2503G>A	p.Ala835Thr	p.A835T	ENST00000377346	NM_005026.3	835	Gcc/Acc						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692919	89692919	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	16	388	0	ENST00000371953.3:c.403A>G	p.Ile135Val	p.I135V	ENST00000371953	NM_000314.4	135	Ata/Gta						NEWRECORD																																																																									
HIST1H3F	8968	MSKCC	GRCh37	6	26250793	26250793	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1843	153	1274	0	ENST00000446824.2:c.41G>C	p.Gly14Ala	p.G14A	ENST00000446824	NM_021018.2	14	gGc/gCc						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115712	8115875	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTCCTCCCTGAGCCACATCTCG	CCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTCCTCCCTGAGCCACATCTCG	-			P-0005602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	78	801	0	ENST00000346208.3:c.1062_1225del	p.Thr355GlnfsTer97	p.T355Qfs*97	ENST00000346208		353	cCCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTCCTCCCTGAGCCACATCTCG/c						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0009661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	272	386	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0009661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	55	404	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55210075	55210075	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1314	401	576	0	ENST00000275493.2:c.185T>G	p.Leu62Arg	p.L62R	ENST00000275493	NM_005228.3	62	cTt/cGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578250	7578250	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1109	124	507	0	ENST00000269305.4:c.599delA	p.Asn200IlefsTer47	p.N200Ifs*47	ENST00000269305	NM_001126112.2	200	aAt/at						NEWRECORD																																																																									
BCL2L11	10018	MSKCC	GRCh37	2	111921808	111921808	+	stop_lost	Nonstop_Mutation	SNP	A	A	T			P-0009661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	49	344	0	ENST00000393256.3:c.597A>T	p.Ter199CysextTer70	p.*199Cext*70	ENST00000393256	NM_006538.4	199	tgA/tgT						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0008056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	13	649	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70361160	70361160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	46	441	0	ENST00000374080.3:c.6348C>A	p.His2116Gln	p.H2116Q	ENST00000374080		2116	caC/caA						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004806-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	65	354	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0007545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	23	201	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0007545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	153	422	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52436809	52436809	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	344	514	1	ENST00000460680.1:c.1969A>T	p.Arg657Trp	p.R657W	ENST00000460680	NM_004656.3	657	Agg/Tgg						NEWRECORD																																																																									
IRF4	3662	MSKCC	GRCh37	6	401731	401731	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	220	301	0	ENST00000380956.4:c.1053G>C	p.Glu351Asp	p.E351D	ENST00000380956	NM_001195286.1	351	gaG/gaC						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2112996	2112996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	247	330	0	ENST00000219476.3:c.1385G>A	p.Arg462His	p.R462H	ENST00000219476	NM_000548.3	462	cGc/cAc						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29663810	29663810	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	312	420	0	ENST00000358273.4:c.6305A>C	p.Tyr2102Ser	p.Y2102S	ENST00000358273	NM_001042492.2	2102	tAc/tCc						NEWRECORD																																																																									
RAD54L	8438	MSKCC	GRCh37	1	46740384	46740632	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGTCTGTAAGGATGGTGATAGTAGTCATAGTAGGGGTGGGTCATGGAACGAGATCTTCAGGACCATCTTGTTCCTTAGTGCCTCTCTTTGGCCTTTCTGCCTCTAGCAGTAGCCAAGCTATGGGCCCAGAAGTGAGTCTTTTATTCTTCTGTTCTCCCTCCCCTTCTCTCCACCCCATTCCCTCAAACCATTCTTACTGTGCCATCTGGACACCTGTTCAGTACATCCTTTTCACAGGACACCTGCTT	CTGTCTGTAAGGATGGTGATAGTAGTCATAGTAGGGGTGGGTCATGGAACGAGATCTTCAGGACCATCTTGTTCCTTAGTGCCTCTCTTTGGCCTTTCTGCCTCTAGCAGTAGCCAAGCTATGGGCCCAGAAGTGAGTCTTTTATTCTTCTGTTCTCCCTCCCCTTCTCTCCACCCCATTCCCTCAAACCATTCTTACTGTGCCATCTGGACACCTGTTCAGTACATCCTTTTCACAGGACACCTGCTT	-			P-0009853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	158	323	0	ENST00000371975.4:c.1865_1869+244del		p.X622_splice	ENST00000371975	NM_003579.3	622							NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44969448	44969450	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0009853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	358	271	0	ENST00000377967.4:c.4131_4133delGTA	p.Gln1377_Tyr1378delinsHis	p.Q1377_Y1378delinsH	ENST00000377967	NM_021140.2	1377	cAGTac/cac						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0006701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	182	304	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0006701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	68	229	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0006701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	243	405	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32166812	32166812	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	80	344	0	ENST00000375023.3:c.4426C>T	p.Arg1476Ter	p.R1476*	ENST00000375023	NM_004557.3	1476	Cga/Tga						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32171645	32171645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	193	296	0	ENST00000375023.3:c.3133G>A	p.Val1045Met	p.V1045M	ENST00000375023	NM_004557.3	1045	Gtg/Atg						NEWRECORD																																																																									
AKT2	208	MSKCC	GRCh37	19	40748443	40748443	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1077	136	647	0	ENST00000392038.2:c.439G>A	p.Val147Met	p.V147M	ENST00000392038	NM_001626.4	147	Gtg/Atg						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116411874	116411902	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	ACAAGCTCTTTCTTTCTCTCTGTTTTAAG	ACAAGCTCTTTCTTTCTCTCTGTTTTAAG	-			P-0009742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	153	246	0	ENST00000397752.3:c.2888-28_2888del		p.X963_splice	ENST00000397752	NM_000245.2	963							NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0005223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	205	472	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0008589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	463	294	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226566888	226566888	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	701	484	0	ENST00000366794.5:c.1700A>T	p.Asn567Ile	p.N567I	ENST00000366794	NM_001618.3	567	aAc/aTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0006616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	121	361	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	88	294	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18499710	18499710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	37	280	0	ENST00000266497.5:c.1565C>T	p.Pro522Leu	p.P522L	ENST00000266497		522	cCt/cTt						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139405654	139405654	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	57	218	0	ENST00000277541.6:c.2537A>C	p.Gln846Pro	p.Q846P	ENST00000277541	NM_017617.3	846	cAa/cCa						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15298776	15298776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	87	333	1	ENST00000263388.2:c.1522G>A	p.Val508Met	p.V508M	ENST00000263388	NM_000435.2	508	Gtg/Atg						NEWRECORD																																																																									
AXL	558	MSKCC	GRCh37	19	41759587	41759587	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	46	395	0	ENST00000301178.4:c.2010C>G	p.His670Gln	p.H670Q	ENST00000301178	NM_021913.4	670	caC/caG						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173494	112173494	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	43	332	0	ENST00000257430.4:c.2203G>C	p.Ala735Pro	p.A735P	ENST00000257430	NM_000038.5	735	Gcg/Ccg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	185	299	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057520007		P-0007012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	489	575	2	ENST00000269305.4:c.614A>C	p.Tyr205Ser	p.Y205S	ENST00000269305	NM_001126112.2	205	tAt/tCt						NEWRECORD																																																																									
CALR	811	MSKCC	GRCh37	19	13054378	13054378	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1835	140	780	0	ENST00000316448.5:c.988T>G	p.Phe330Val	p.F330V	ENST00000316448	NM_004343.3	330	Ttc/Gtc						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15285027	15285028	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0007012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	93	517	1	ENST00000263388.2:c.4587_4588delinsTT	p.Asp1530Tyr	p.D1530Y	ENST00000263388	NM_000435.2	1529	gcCGac/gcTTac						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15288735	15288735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	48	113	0	ENST00000263388.2:c.4004G>A	p.Ser1335Asn	p.S1335N	ENST00000263388	NM_000435.2	1335	aGc/aAc						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42794685	42794685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	107	491	1	ENST00000575354.2:c.1765C>T	p.Arg589Trp	p.R589W	ENST00000575354	NM_015125.3	589	Cgg/Tgg						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76938769	76938769	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	85	187	0	ENST00000373344.5:c.1979A>C	p.Lys660Thr	p.K660T	ENST00000373344	NM_000489.3	660	aAg/aCg						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2126114	2126116	+	inframe_deletion	In_Frame_Del	DEL	GTG	GTG	-			P-0007012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	286	605	0	ENST00000219476.3:c.2687_2689del	p.Trp896del	p.W896del	ENST00000219476	NM_000548.3	895	atGTGg/atg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005807-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1089	193	427	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0005807-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	44	253	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67457271	67457271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005807-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	111	550	0	ENST00000327367.4:c.245G>A	p.Gly82Glu	p.G82E	ENST00000327367	NM_005902.3	82	gGg/gAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112176167	112176167	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005807-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	157	614	1	ENST00000257430.4:c.4879del	p.Gln1627LysfsTer23	p.Q1627Kfs*23	ENST00000257430	NM_000038.5	1626	Ccc/cc						NEWRECORD																																																																									
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	20	307	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg						NEWRECORD																																																																									
MPL	4352	MSKCC	GRCh37	1	43818256	43818256	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1156	85	500	2	ENST00000372470.3:c.1721C>A	p.Ser574Tyr	p.S574Y	ENST00000372470	NM_005373.2	574	tCc/tAc						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47129739	47129739	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	74	262	0	ENST00000409792.3:c.5143-2A>T		p.X1715_splice	ENST00000409792	NM_014159.6	1715							NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	93974387	93974387	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1239	95	560	0	ENST00000369303.4:c.1667T>A	p.Ile556Asn	p.I556N	ENST00000369303	NM_004440.3	556	aTt/aAt						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140439718	140439718	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	40	215	0	ENST00000288602.6:c.2021T>A	p.Leu674Gln	p.L674Q	ENST00000288602	NM_004333.4	674	cTg/cAg						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974756	21974756	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	48	230	0	ENST00000304494.5:c.71G>C	p.Arg24Pro	p.R24P	ENST00000304494	NM_000077.4	24	cGg/cCg						NEWRECORD																																																																									
FGFR2	2263	MSKCC	GRCh37	10	123260375	123260375	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	64	433	0	ENST00000358487.5:c.1526A>T	p.Lys509Met	p.K509M	ENST00000358487	NM_000141.4	509	aAg/aTg						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46246476	46246476	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1271	125	496	1	ENST00000334344.6:c.4570A>T	p.Arg1524Trp	p.R1524W	ENST00000334344	NM_152641.2	1524	Agg/Tgg						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	29012466	29012466	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	70	290	0	ENST00000282397.4:c.405C>G	p.Phe135Leu	p.F135L	ENST00000282397	NM_002019.4	135	ttC/ttG						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23632723	23632723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	103	401	0	ENST00000261584.4:c.3073G>T	p.Ala1025Ser	p.A1025S	ENST00000261584	NM_024675.3	1025	Gct/Tct						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577135	7577149	+	inframe_deletion	In_Frame_Del	DEL	TTCCGTCCCAGTAGA	TTCCGTCCCAGTAGA	-			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1082	157	519	0	ENST00000269305.4:c.789_803del	p.Leu264_Asn268del	p.L264_N268del	ENST00000269305	NM_001126112.2	263	aaTCTACTGGGACGGAAc/aac						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	41991343	41991344	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1389	92	633	0	ENST00000219905.7:c.2174_2175del	p.Pro725ArgfsTer19	p.P725Rfs*19	ENST00000219905	NM_001164273.1	725	cCT/c						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11170475	11170475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	86	466	0	ENST00000344626.4:c.4683del	p.Gln1562ArgfsTer34	p.Q1562Rfs*34	ENST00000344626	NM_003072.3	1561	cGg/cg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	55	328	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150005552	150005553	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0009763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	102	400	0	ENST00000253339.5:c.672_673del	p.Gln225SerfsTer4	p.Q225Sfs*4	ENST00000253339		224	gtTCaa/gtaa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	21	586	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
NKX2-1	7080	MSKCC	GRCh37	14	36987021	36987021	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	29	208	0	ENST00000354822.5:c.668A>T	p.His223Leu	p.H223L	ENST00000354822	NM_001079668.2	223	cAc/cTc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	22	243	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
RPS6KB2	6199	MSKCC	GRCh37	11	67202158	67202158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	50	302	0	ENST00000312629.5:c.1261C>T	p.Pro421Ser	p.P421S	ENST00000312629	NM_003952.2	421	Ccc/Tcc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578453	7578455	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0006165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	65	331	0	ENST00000269305.4:c.475_477del	p.Ala159del	p.A159del	ENST00000269305	NM_001126112.2	159	GCC/-						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221319	1221319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	14	353	0	ENST00000326873.7:c.842C>T	p.Pro281Leu	p.P281L	ENST00000326873	NM_000455.4	281	cCg/cTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0005147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	25	300	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc						NEWRECORD																																																																									
MALT1	10892	MSKCC	GRCh37	18	56381323	56381323	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	66	450	0	ENST00000348428.3:c.967A>C	p.Asn323His	p.N323H	ENST00000348428	NM_006785.3	323	Aat/Cat						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006322-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	21	326	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48573561	48573561	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006322-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	60	354	0	ENST00000342988.3:c.145G>T	p.Glu49Ter	p.E49*	ENST00000342988	NM_005359.5	49	Gag/Tag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	199	287	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	444	362	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg						NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	337	776	0	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108143509	108143509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	447	656	1	ENST00000278616.4:c.3214G>A	p.Glu1072Lys	p.E1072K	ENST00000278616	NM_000051.3	1072	Gaa/Aaa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023696	27023696	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	247	561	0	ENST00000324856.7:c.802C>T	p.Gln268Ter	p.Q268*	ENST00000324856	NM_006015.4	268	Cag/Tag						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16255133	16255133	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	278	588	0	ENST00000375759.3:c.2398G>T	p.Glu800Ter	p.E800*	ENST00000375759	NM_015001.2	800	Gag/Tag						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56178143	56178143	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	197	408	0	ENST00000399503.3:c.3116C>G	p.Ser1039Ter	p.S1039*	ENST00000399503	NM_005921.1	1039	tCa/tGa						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56178646	56178646	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	381	408	0	ENST00000399503.3:c.3619C>T	p.Gln1207Ter	p.Q1207*	ENST00000399503	NM_005921.1	1207	Cag/Tag						NEWRECORD																																																																									
HIST1H3F	8968	MSKCC	GRCh37	6	26250743	26250743	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1415	391	1033	0	ENST00000446824.2:c.91C>G	p.Pro31Ala	p.P31A	ENST00000446824	NM_021018.2	31	Cca/Gca						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55270250	55270250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	214	592	1	ENST00000275493.2:c.3203G>A	p.Arg1068Gln	p.R1068Q	ENST00000275493	NM_005228.3	1068	cGa/cAa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151851415	151851415	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	539	656	0	ENST00000262189.6:c.12076G>T	p.Glu4026Ter	p.E4026*	ENST00000262189	NM_170606.2	4026	Gag/Tag						NEWRECORD																																																																									
MYC	4609	MSKCC	GRCh37	8	128752653	128752653	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	348	451	0	ENST00000377970.2:c.814G>T	p.Glu272Ter	p.E272*	ENST00000377970	NM_002467.4	272	Gaa/Taa						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64571841	64571841	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	912	954	0	ENST00000337652.1:c.1813C>G	p.Leu605Val	p.L605V	ENST00000337652	NM_130803.2	605	Ctg/Gtg						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56481859	56481859	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	315	594	0	ENST00000267101.3:c.787C>G	p.Leu263Val	p.L263V	ENST00000267101	NM_001982.3	263	Ctt/Gtt						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28626775	28626775	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	229	570	0	ENST00000241453.7:c.521G>C	p.Arg174Thr	p.R174T	ENST00000241453	NM_004119.2	174	aGa/aCa						NEWRECORD																																																																									
CHEK2	11200	MSKCC	GRCh37	22	29091121	29091121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	314	435	2	ENST00000328354.6:c.1369G>A	p.Glu457Lys	p.E457K	ENST00000328354	NM_007194.3	457	Gag/Aag						NEWRECORD																																																																									
CHEK2	11200	MSKCC	GRCh37	22	29091814	29091814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	251	394	0	ENST00000328354.6:c.1143G>A	p.Met381Ile	p.M381I	ENST00000328354	NM_007194.3	381	atG/atA						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123179189	123179189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	494	619	0	ENST00000218089.9:c.638G>A	p.Arg213Lys	p.R213K	ENST00000218089	NM_001042749.1	213	aGa/aAa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008478-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	339	371	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68846065	68846065	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008478-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	115	560	0	ENST00000261769.5:c.1036C>T	p.Gln346Ter	p.Q346*	ENST00000261769	NM_004360.3	346	Caa/Taa						NEWRECORD																																																																									
BCL6	604	MSKCC	GRCh37	3	187443345	187443347	+	inframe_deletion	In_Frame_Del	DEL	CGA	CGA	-			P-0008478-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	234	409	0	ENST00000232014.4:c.1779_1781del	p.Arg594del	p.R594del	ENST00000232014	NM_001130845.1	593	acTCGa/aca						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	245	454	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156846291	156846291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1158	87	544	0	ENST00000524377.1:c.1732G>A	p.Val578Ile	p.V578I	ENST00000524377	NM_002529.3	578	Gtc/Atc						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25467144	25467144	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	91	536	0	ENST00000264709.3:c.1731G>C	p.Lys577Asn	p.K577N	ENST00000264709	NM_175629.2	577	aaG/aaC						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	186	477	0	ENST00000269305.4:c.568C>A	p.Pro190Thr	p.P190T	ENST00000269305	NM_001126112.2	190	Cct/Act						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40827922	40827922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	101	584	0	ENST00000373198.4:c.2506G>T	p.Asp836Tyr	p.D836Y	ENST00000373198	NM_133170.3	836	Gat/Tat						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	348	568	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	94	298	0	ENST00000397062.3:c.101G>A	p.Arg34Gln	p.R34Q	ENST00000397062	NM_006164.4	34	cGa/cAa						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89725042	89725042	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	296	387	0	ENST00000371953.3:c.1027-2A>T		p.X343_splice	ENST00000371953	NM_000314.4	343							NEWRECORD																																																																									
ID3	3399	MSKCC	GRCh37	1	23885761	23885761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	174	657	0	ENST00000374561.5:c.157G>A	p.Glu53Lys	p.E53K	ENST00000374561	NM_002167.4	53	Gaa/Aaa						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25964923	25964923	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	134	439	0	ENST00000435504.4:c.4283G>T	p.Cys1428Phe	p.C1428F	ENST00000435504		1428	tGc/tTc						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212426761	212426761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	250	388	0	ENST00000342788.4:c.2354G>T	p.Gly785Val	p.G785V	ENST00000342788	NM_005235.2	785	gGt/gTt						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52712591	52712591	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	239	416	0	ENST00000394830.3:c.161A>G	p.Tyr54Cys	p.Y54C	ENST00000394830	NM_018313.4	54	tAt/tGt						NEWRECORD																																																																									
HIST1H3A	8350	MSKCC	GRCh37	6	26020742	26020742	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1265	227	674	0	ENST00000357647.3:c.25C>G	p.Arg9Gly	p.R9G	ENST00000357647	NM_003529.2	9	Cgg/Ggg						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106524663	106524663	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	584	347	1	ENST00000359195.3:c.2824C>A	p.Leu942Ile	p.L942I	ENST00000359195	NM_002649.2	942	Ctt/Att						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63852745	63852745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	162	142	0	ENST00000279873.7:c.3523C>T	p.Pro1175Ser	p.P1175S	ENST00000279873	NM_032199.2	1175	Cca/Tca						NEWRECORD																																																																									
FGFR2	2263	MSKCC	GRCh37	10	123279562	123279562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	364	491	0	ENST00000358487.5:c.870G>C	p.Trp290Cys	p.W290C	ENST00000358487	NM_000141.4	290	tgG/tgC						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9916158	9916158	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	283	425	0	ENST00000330684.3:c.2131A>C	p.Lys711Gln	p.K711Q	ENST00000330684	NM_001134407.1	711	Aaa/Caa						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40733232	40733232	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	208	366	0	ENST00000373198.4:c.3574A>T	p.Ser1192Cys	p.S1192C	ENST00000373198	NM_133170.3	1192	Agc/Tgc						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41531904	41531904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	109	369	0	ENST00000263253.7:c.1616C>T	p.Ser539Phe	p.S539F	ENST00000263253	NM_001429.3	539	tCt/tTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006620-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	153	361	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006620-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	64	366	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87285817	87285817	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006620-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	152	473	0	ENST00000277120.3:c.154A>T	p.Ile52Phe	p.I52F	ENST00000277120		52	Atc/Ttc						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86674272	86674276	+	frameshift_variant	Frame_Shift_Del	DEL	ATGAA	ATGAA	-			P-0006620-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	38	305	0	ENST00000274376.6:c.2405_2409del	p.Met802SerfsTer26	p.M802Sfs*26	ENST00000274376	NM_002890.2	802	ATGAAa/a						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47039669	47039669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			52	228	290	0	ENST00000329236.7:c.887G>T	p.Gly296Val	p.G296V	ENST00000329236	NM_001204466.1	296	gGc/gTc						NEWRECORD																																																																									
MAP2K1	5604	MSKCC	GRCh37	15	66729101	66729101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	41	462	0	ENST00000307102.5:c.309C>G	p.Ile103Met	p.I103M	ENST00000307102	NM_002755.3	103	atC/atG						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220707	1220707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	632	419	0	ENST00000326873.7:c.725G>T	p.Gly242Val	p.G242V	ENST00000326873	NM_000455.4	242	gGg/gTg						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131973802	131973802	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			68	29	363	2	ENST00000265335.6:c.3505G>T	p.Ala1169Ser	p.A1169S	ENST00000265335		1169	Gcc/Tcc						NEWRECORD																																																																									
NKX3-1	4824	MSKCC	GRCh37	8	23538982	23538982	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	266	520	0	ENST00000380871.4:c.457G>C	p.Glu153Gln	p.E153Q	ENST00000380871	NM_006167.3	153	Gaa/Caa						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53245080	53245080	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			24	111	351	0	ENST00000375401.3:c.860C>A	p.Ser287Ter	p.S287*	ENST00000375401	NM_004187.3	287	tCg/tAg						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11169476	11169483	+	frameshift_variant	Frame_Shift_Del	DEL	AACCACAA	AACCACAA	-			P-0008976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	199	520	0	ENST00000344626.4:c.4546_4553del	p.Asn1516ValfsTer30	p.N1516Vfs*30	ENST00000344626	NM_003072.3	1516	AACCACAAg/g						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602922	10602923	+	missense_variant	Missense_Mutation	DNP	TC	TC	GA			P-0008976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	433	385	0	ENST00000171111.5:c.655_656inv	p.Glu219Ser	p.E219S	ENST00000171111	NM_203500.1	219	GAg/TCg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	68	354	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	304	352	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0006693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	163	341	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0006693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	243	331	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49420688	49420688	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	121	257	0	ENST00000301067.7:c.15061C>T	p.Arg5021Ter	p.R5021*	ENST00000301067	NM_003482.3	5021	Cga/Tga						NEWRECORD																																																																									
RAF1	5894	MSKCC	GRCh37	3	12660124	12660124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	90	458	0	ENST00000251849.4:c.97G>C	p.Val33Leu	p.V33L	ENST00000251849	NM_002880.3	33	Gtt/Ctt						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2956965	2956965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	314	365	0	ENST00000396946.4:c.2662C>T	p.Arg888Cys	p.R888C	ENST00000396946	NM_032415.4	888	Cgt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0005104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	188	452	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	50	256	0	ENST00000397062.3:c.92G>C	p.Gly31Ala	p.G31A	ENST00000397062	NM_006164.4	31	gGa/gCa						NEWRECORD																																																																									
MLH1	4292	MSKCC	GRCh37	3	37067386	37067386	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	103	376	0	ENST00000231790.2:c.1297G>C	p.Glu433Gln	p.E433Q	ENST00000231790	NM_000249.3	433	Gaa/Caa						NEWRECORD																																																																									
GNAQ	2776	MSKCC	GRCh37	9	80336376	80336376	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	35	306	0	ENST00000286548.4:c.943G>C	p.Asp315His	p.D315H	ENST00000286548	NM_002072.3	315	Gac/Cac						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692902	89692902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	93	259	0	ENST00000371953.3:c.386G>A	p.Gly129Glu	p.G129E	ENST00000371953	NM_000314.4	129	gGa/gAa						NEWRECORD																																																																									
IGF1	3479	MSKCC	GRCh37	12	102813343	102813343	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0005104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	109	403	0	ENST00000307046.8:c.346A>T	p.Lys116Ter	p.K116*	ENST00000307046	NM_001111285.1	116	Aag/Tag						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95560382	95560382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	70	277	0	ENST00000343455.3:c.5207G>T	p.Arg1736Leu	p.R1736L	ENST00000343455	NM_177438.2	1736	cGg/cTg						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3778653	3778653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	86	297	0	ENST00000262367.5:c.6395G>T	p.Gly2132Val	p.G2132V	ENST00000262367	NM_004380.2	2132	gGc/gTc						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15299866	15299866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	216	392	1	ENST00000263388.2:c.1312G>A	p.Gly438Arg	p.G438R	ENST00000263388	NM_000435.2	438	Ggg/Agg						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974809	21974809	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	49	67	0	ENST00000304494.5:c.18del	p.Ser7AlafsTer19	p.S7Afs*19	ENST00000304494	NM_000077.4	6	ggG/gg						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0008724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	88	132	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0008724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	255	609	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0008724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	699	379	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89521615	89521615	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	110	301	0	ENST00000336596.2:c.2692C>T	p.Pro898Ser	p.P898S	ENST00000336596	NM_005233.5	898	Cca/Tca						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187532540	187532540	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0008724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	147	442	0	ENST00000441802.2:c.9853G>C	p.Gly3285Arg	p.G3285R	ENST00000441802	NM_005245.3	3285	Ggg/Cgg						NEWRECORD																																																																									
NCOA3	8202	MSKCC	GRCh37	20	46279865	46279865	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1460	216	474	0	ENST00000371998.3:c.3791A>C	p.Gln1264Pro	p.Q1264P	ENST00000371998		1264	cAa/cCa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	96	562	3	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775623976		P-0007336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	69	439	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0007336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	120	436	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0007336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	106	533	0	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131923706	131923706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	63	589	0	ENST00000265335.6:c.976C>T	p.His326Tyr	p.H326Y	ENST00000265335		326	Cat/Tat						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0007869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	351	525	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56867142	56867142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	313	627	4	ENST00000308159.5:c.1361C>T	p.Thr454Met	p.T454M	ENST00000308159	NM_014669.4	454	aCg/aTg						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11132500	11132500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	375	377	0	ENST00000344626.4:c.2716C>T	p.Arg906Cys	p.R906C	ENST00000344626	NM_003072.3	906	Cgc/Tgc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175450	112175457	+	frameshift_variant	Frame_Shift_Del	DEL	TGTACTTC	TGTACTTC	-			P-0007869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	188	296	0	ENST00000257430.4:c.4162_4169del	p.Thr1388GlnfsTer4	p.T1388Qfs*4	ENST00000257430	NM_000038.5	1387	TGTACTTCt/t						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0009520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	21	143	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0007634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	67	262	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117641151	117641151	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1111	63	476	1	ENST00000368508.3:c.5820C>A	p.Phe1940Leu	p.F1940L	ENST00000368508	NM_002944.2	1940	ttC/ttA						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98242769	98242769	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	68	252	0	ENST00000331920.6:c.848A>G	p.Asn283Ser	p.N283S	ENST00000331920	NM_000264.3	283	aAt/aGt						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49039182	49039182	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	40	294	0	ENST00000267163.4:c.2260G>C	p.Val754Leu	p.V754L	ENST00000267163	NM_000321.2	754	Gta/Cta						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95599669	95599669	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	43	298	0	ENST00000343455.3:c.127A>G	p.Thr43Ala	p.T43A	ENST00000343455	NM_177438.2	43	Acg/Gcg						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31021190	31021190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	69	282	1	ENST00000375687.4:c.1189C>T	p.Arg397Cys	p.R397C	ENST00000375687	NM_015338.5	397	Cgt/Tgt						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11095949	11095949	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0007634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	48	221	0	ENST00000344626.4:c.225del	p.Met76TrpfsTer18	p.M76Wfs*18	ENST00000344626	NM_003072.3	75	Ccc/cc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576883	7576883	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	76	501	0	ENST00000269305.4:c.963del	p.Lys321AsnfsTer24	p.K321Nfs*24	ENST00000269305	NM_001126112.2	321	aaA/aa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	50	253	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0009487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	49	258	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11143993	11143993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	85	253	0	ENST00000344626.4:c.3574C>T	p.Arg1192Cys	p.R1192C	ENST00000344626	NM_003072.3	1192	Cgc/Tgc						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212587167	212587167	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	163	348	0	ENST00000342788.4:c.834T>A	p.Asn278Lys	p.N278K	ENST00000342788	NM_005235.2	278	aaT/aaA						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	95	410	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782144		P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	98	382	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc						NEWRECORD																																																																									
CTLA4	1493	MSKCC	GRCh37	2	204732727	204732727	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	109	366	0	ENST00000302823.3:c.62C>A	p.Pro21His	p.P21H	ENST00000302823	NM_005214.4	21	cCc/cAc						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212285182	212285182	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	71	356	0	ENST00000342788.4:c.3119G>C	p.Arg1040Thr	p.R1040T	ENST00000342788	NM_005235.2	1040	aGa/aCa						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215632276	215632276	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	65	515	0	ENST00000260947.4:c.1498G>C	p.Asp500His	p.D500H	ENST00000260947	NM_000465.2	500	Gat/Cat						NEWRECORD																																																																									
MITF	4286	MSKCC	GRCh37	3	69928295	69928295	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	115	320	1	ENST00000352241.4:c.115G>T	p.Glu39Ter	p.E39*	ENST00000352241	NM_198159.2	39	Gag/Tag						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89391084	89391084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	135	412	0	ENST00000336596.2:c.1150C>A	p.Pro384Thr	p.P384T	ENST00000336596	NM_005233.5	384	Cct/Act						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55141119	55141119	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	57	370	0	ENST00000257290.5:c.1765C>A	p.Pro589Thr	p.P589T	ENST00000257290	NM_006206.4	589	Cca/Aca						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55146561	55146561	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	65	424	0	ENST00000257290.5:c.2235G>T	p.Met745Ile	p.M745I	ENST00000257290	NM_006206.4	745	atG/atT						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149504379	149504379	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	117	392	0	ENST00000261799.4:c.1823C>A	p.Ser608Tyr	p.S608Y	ENST00000261799	NM_002609.3	608	tCt/tAt						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30680106	30680106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	140	511	0	ENST00000376406.3:c.1613T>C	p.Ile538Thr	p.I538T	ENST00000376406	NM_014641.2	538	aTa/aCa						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117704571	117704571	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	69	441	0	ENST00000368508.3:c.2405A>G	p.Tyr802Cys	p.Y802C	ENST00000368508	NM_002944.2	802	tAc/tGc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8341190	8341190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	61	457	1	ENST00000356435.5:c.5026G>A	p.Val1676Ile	p.V1676I	ENST00000356435		1676	Gtt/Att						NEWRECORD																																																																									
RAD51B	5890	MSKCC	GRCh37	14	68331797	68331797	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1158	77	523	0	ENST00000487270.1:c.393G>T	p.Met131Ile	p.M131I	ENST00000487270	NM_133509.3	131	atG/atT						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3779649	3779649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	111	390	1	ENST00000262367.5:c.5399G>T	p.Arg1800Leu	p.R1800L	ENST00000262367	NM_004380.2	1800	cGg/cTg						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10271060	10271060	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	87	357	0	ENST00000340748.4:c.995C>T	p.Pro332Leu	p.P332L	ENST00000340748		332	cCa/cTa						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11134270	11134270	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	117	386	0	ENST00000344626.4:c.2936G>T	p.Arg979Leu	p.R979L	ENST00000344626	NM_003072.3	979	cGa/cTa						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17943652	17943652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	156	454	0	ENST00000458235.1:c.2437G>T	p.Asp813Tyr	p.D813Y	ENST00000458235	NM_000215.3	813	Gac/Tac						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41100992	41100992	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	125	409	0	ENST00000373198.4:c.1364T>C	p.Phe455Ser	p.F455S	ENST00000373198	NM_133170.3	455	tTc/tCc						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41740116	41740116	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	14	97	0	ENST00000242208.4:c.-143-1G>T		p.X48_splice	ENST00000242208	NM_002192.2	48							NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37879885	37879885	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	338	478	4	ENST00000269571.5:c.2180G>C	p.Gly727Ala	p.G727A	ENST00000269571		727	gGa/gCa						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16257388	16257388	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	124	412	0	ENST00000375759.3:c.4653A>T	p.Glu1551Asp	p.E1551D	ENST00000375759	NM_015001.2	1551	gaA/gaT						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134873092	134873092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	157	479	4	ENST00000398015.3:c.1396G>A	p.Asp466Asn	p.D466N	ENST00000398015	NM_004441.4	466	Gac/Aac						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55141060	55141060	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	136	442	0	ENST00000257290.5:c.1706G>T	p.Gly569Val	p.G569V	ENST00000257290	NM_006206.4	569	gGa/gTa						NEWRECORD																																																																									
EIF4E	1977	MSKCC	GRCh37	4	99808343	99808343	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	72	250	0	ENST00000280892.6:c.346G>T	p.Asp116Tyr	p.D116Y	ENST00000280892	NM_001130678.1	116	Gat/Tat						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187510308	187510308	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	290	328	1	ENST00000441802.2:c.13205A>C	p.Asn4402Thr	p.N4402T	ENST00000441802	NM_005245.3	4402	aAc/aCc						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32170121	32170121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	125	387	0	ENST00000375023.3:c.3487C>T	p.His1163Tyr	p.H1163Y	ENST00000375023	NM_004557.3	1163	Cac/Tac						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32183157	32183157	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	242	386	3	ENST00000375023.3:c.1867C>G	p.Leu623Val	p.L623V	ENST00000375023	NM_004557.3	623	Ctc/Gtc						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8100310	8100310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	152	448	3	ENST00000346208.3:c.284C>T	p.Pro95Leu	p.P95L	ENST00000346208		95	cCc/cTc						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70332922	70332922	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	141	555	1	ENST00000373644.4:c.827G>T	p.Arg276Leu	p.R276L	ENST00000373644	NM_030625.2	276	cGa/cTa						NEWRECORD																																																																									
FGF4	2249	MSKCC	GRCh37	11	69588108	69588108	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	127	507	0	ENST00000168712.1:c.590T>C	p.Met197Thr	p.M197T	ENST00000168712	NM_002007.2	197	aTg/aCg						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115114168	115114168	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	172	519	0	ENST00000257566.3:c.1049C>A	p.Ala350Asp	p.A350D	ENST00000257566	NM_016569.3	350	gCc/gAc						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9862876	9862876	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	189	412	0	ENST00000330684.3:c.2427C>A	p.Ser809Arg	p.S809R	ENST00000330684	NM_001134407.1	809	agC/agA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0006979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	132	326	1	ENST00000269305.4:c.374C>A	p.Thr125Lys	p.T125K	ENST00000269305	NM_001126112.2	125	aCg/aAg						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15952238	15952238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1091	204	486	0	ENST00000268712.3:c.6457C>T	p.Pro2153Ser	p.P2153S	ENST00000268712	NM_006311.3	2153	Ccc/Tcc						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37879838	37879838	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	321	459	4	ENST00000269571.5:c.2133G>C	p.Gln711His	p.Q711H	ENST00000269571		711	caG/caC						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63537617	63537617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	127	544	0	ENST00000307078.5:c.1015C>T	p.Arg339Cys	p.R339C	ENST00000307078	NM_004655.3	339	Cgc/Tgc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220415	1220415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	135	462	2	ENST00000326873.7:c.508C>T	p.Gln170Ter	p.Q170*	ENST00000326873	NM_000455.4	170	Cag/Tag						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610382	10610382	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	138	468	0	ENST00000171111.5:c.328A>G	p.Met110Val	p.M110V	ENST00000171111	NM_203500.1	110	Atg/Gtg						NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52719050	52719050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	181	419	1	ENST00000322088.6:c.826C>A	p.Pro276Thr	p.P276T	ENST00000322088	NM_014225.5	276	Cct/Act						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11101834	11101835	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AT			P-0006979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	126	455	0	ENST00000344626.4:c.1254_1255delinsAT	p.Glu419Ter	p.E419*	ENST00000344626	NM_003072.3	418	caGGag/caATag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0009725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	201	271	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0009725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	286	544	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt						NEWRECORD																																																																									
MYCN	4613	MSKCC	GRCh37	2	16082526	16082526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	71	250	0	ENST00000281043.3:c.340G>A	p.Asp114Asn	p.D114N	ENST00000281043	NM_005378.4	114	Gac/Aac						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52437747	52437747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1419	315	725	0	ENST00000460680.1:c.1414G>A	p.Gly472Arg	p.G472R	ENST00000460680	NM_004656.3	472	Ggg/Agg						NEWRECORD																																																																									
ARAF	369	MSKCC	GRCh37	X	47429022	47429022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1156	274	522	0	ENST00000377045.4:c.1385C>T	p.Pro462Leu	p.P462L	ENST00000377045	NM_001654.4	462	cCc/cTc						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89480403	89480403	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	72	405	0	ENST00000336596.2:c.2240T>A	p.Leu747His	p.L747H	ENST00000336596	NM_005233.5	747	cTc/cAc						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30671846	30671846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	75	482	0	ENST00000376406.3:c.5114C>T	p.Thr1705Ile	p.T1705I	ENST00000376406	NM_014641.2	1705	aCc/aTc						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11152041	11152041	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	106	344	1	ENST00000344626.4:c.4229C>A	p.Ser1410Ter	p.S1410*	ENST00000344626	NM_003072.3	1410	tCa/tAa						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66941674	66941674	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	99	504	1	ENST00000374690.3:c.2319-1G>A		p.X773_splice	ENST00000374690	NM_000044.3	773							NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221983	1222003	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	ATCCGGCAGATCCGGCAGCAC	ATCCGGCAGATCCGGCAGCAC	GGAT			P-0006582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	122	452	0	ENST00000326873.7:c.898_918delinsGGAT	p.Ile300GlyfsTer2	p.I300Gfs*2	ENST00000326873	NM_000455.4	300	ATCCGGCAGATCCGGCAGCAC/GGAT						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134911477	134911477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	476	340	0	ENST00000398015.3:c.1942G>T	p.Val648Leu	p.V648L	ENST00000398015	NM_004441.4	648	Gtg/Ttg						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176707743	176707743	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	701	561	0	ENST00000439151.2:c.5800C>G	p.Gln1934Glu	p.Q1934E	ENST00000439151	NM_022455.4	1934	Cag/Gag						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0008678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	401	282	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat						NEWRECORD																																																																									
MAX	4149	MSKCC	GRCh37	14	65544756	65544756	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0008678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	396	321	0	ENST00000358664.4:c.172-2A>T		p.X58_splice	ENST00000358664	NM_002382.4	58							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0008678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	586	454	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2216586	2216586	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	200	528	0	ENST00000398665.3:c.2230G>T	p.Asp744Tyr	p.D744Y	ENST00000398665	NM_032482.2	744	Gac/Tac						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47045157	47045157	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	843	600	1	ENST00000329236.7:c.2164G>T	p.Glu722Ter	p.E722*	ENST00000329236	NM_001204466.1	722	Gag/Tag						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65305301	65305301	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	649	880	0	ENST00000342505.4:c.2827del	p.Ile943SerfsTer33	p.I943Sfs*33	ENST00000342505	NM_002227.2	943	Atc/tc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0007788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	69	395	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0007788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	27	229	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0007788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	20	448	1	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27094465	27094465	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	26	369	3	ENST00000324856.7:c.3173T>C	p.Val1058Ala	p.V1058A	ENST00000324856	NM_006015.4	1058	gTg/gCg						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25467197	25467197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	33	405	0	ENST00000264709.3:c.1678G>T	p.Val560Leu	p.V560L	ENST00000264709	NM_175629.2	560	Gtg/Ttg						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187539493	187539493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	63	482	0	ENST00000441802.2:c.8247G>T	p.Glu2749Asp	p.E2749D	ENST00000441802	NM_005245.3	2749	gaG/gaT						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150001288	150001288	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	12	521	0	ENST00000253339.5:c.2316C>G	p.Phe772Leu	p.F772L	ENST00000253339		772	ttC/ttG						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106513024	106513024	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	18	368	0	ENST00000359195.3:c.2038T>C	p.Phe680Leu	p.F680L	ENST00000359195	NM_002649.2	680	Ttt/Ctt						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70344644	70344644	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	42	638	0	ENST00000374080.3:c.2005G>C	p.Asp669His	p.D669H	ENST00000374080		669	Gac/Cac						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70344679	70344679	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	65	549	2	ENST00000374080.3:c.2040del	p.Lys681SerfsTer30	p.K681Sfs*30	ENST00000374080		680	gaG/ga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577562	7577563	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0007788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	73	487	0	ENST00000269305.4:c.718_719delinsTT	p.Ser240Phe	p.S240F	ENST00000269305	NM_001126112.2	240	AGt/TTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0008307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	40	490	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47044922	47044922	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	50	206	0	ENST00000329236.7:c.2014G>T	p.Glu672Ter	p.E672*	ENST00000329236	NM_001204466.1	672	Gag/Tag						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610382	10610382	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	62	484	0	ENST00000171111.5:c.328A>G	p.Met110Val	p.M110V	ENST00000171111	NM_203500.1	110	Atg/Gtg						NEWRECORD																																																																									
FGFR2	2263	MSKCC	GRCh37	10	123276919	123276919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	70	584	0	ENST00000358487.5:c.998C>T	p.Thr333Ile	p.T333I	ENST00000358487	NM_000141.4	333	aCt/aTt						NEWRECORD																																																																									
EED	8726	MSKCC	GRCh37	11	85961491	85961491	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0008307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	45	357	0	ENST00000263360.6:c.267+1G>T		p.X89_splice	ENST00000263360	NM_003797.3	89							NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2138543	2138543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	54	535	0	ENST00000219476.3:c.5356C>T	p.Pro1786Ser	p.P1786S	ENST00000219476	NM_000548.3	1786	Cct/Tct						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857496	9857496	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	43	377	0	ENST00000330684.3:c.3905T>A	p.Leu1302Gln	p.L1302Q	ENST00000330684	NM_001134407.1	1302	cTa/cAa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0008175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	82	499	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0008175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	34	284	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212295773	212295773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1299031105		P-0008175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	62	625	1	ENST00000342788.4:c.2540G>A	p.Arg847His	p.R847H	ENST00000342788	NM_005235.2	847	cGt/cAt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48581338	48581339	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0008175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	64	385	0	ENST00000342988.3:c.642_643del	p.Pro215GlnfsTer19	p.P215Qfs*19	ENST00000342988	NM_005359.5	214	ttTCcc/ttcc						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108188115	108188115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	193	363	0	ENST00000278616.4:c.6214G>A	p.Gly2072Arg	p.G2072R	ENST00000278616	NM_000051.3	2072	Gga/Aga						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180057800	180057800	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0005399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	51	209	0	ENST00000261937.6:c.156-1G>C		p.X52_splice	ENST00000261937	NM_182925.4	52							NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30680572	30680572	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	79	399	0	ENST00000376406.3:c.1147G>T	p.Gly383Cys	p.G383C	ENST00000376406	NM_014641.2	383	Ggc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0006942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	42	654	4	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55968580	55968580	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	56	603	1	ENST00000263923.4:c.2083C>A	p.Pro695Thr	p.P695T	ENST00000263923	NM_002253.2	695	Cct/Act						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106509624	106509624	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	64	680	0	ENST00000359195.3:c.1618G>T	p.Gly540Trp	p.G540W	ENST00000359195	NM_002649.2	540	Ggg/Tgg						NEWRECORD																																																																									
PAK1	5058	MSKCC	GRCh37	11	77066888	77066888	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0006942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	45	413	0	ENST00000356341.3:c.598-1G>T		p.X200_splice	ENST00000356341	NM_002576.4	200							NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32954237	32954237	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1015	55	644	0	ENST00000380152.3:c.9211G>T	p.Glu3071Ter	p.E3071*	ENST00000380152		3071	Gag/Tag						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29553501	29553501	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	54	575	0	ENST00000358273.4:c.2050C>T	p.Gln684Ter	p.Q684*	ENST00000358273	NM_001042492.2	684	Cag/Tag						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11132477	11132477	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	52	650	0	ENST00000344626.4:c.2693A>G	p.Asn898Ser	p.N898S	ENST00000344626	NM_003072.3	898	aAc/aGc						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31025100	31025100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	62	534	0	ENST00000375687.4:c.4585G>A	p.Gly1529Arg	p.G1529R	ENST00000375687	NM_015338.5	1529	Gga/Aga						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47034416	47034416	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0006942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	69	590	0	ENST00000329236.7:c.272-2A>T		p.X91_splice	ENST00000329236	NM_001204466.1	91							NEWRECORD																																																																									
BIRC3	330	MSKCC	GRCh37	11	102196257	102196259	+	missense_variant	Missense_Mutation	ONP	GAG	GAG	AAA			P-0006942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1357	94	812	0	ENST00000263464.3:c.914_916delinsAAA	p.Gly305_Asp306delinsGluAsn	p.G305_D306delinsEN	ENST00000263464	NM_001165.4	305	gGAGat/gAAAat						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1097	61	382	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	189	314	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3779782	3779782	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	220	300	0	ENST00000262367.5:c.5266C>T	p.Gln1756Ter	p.Q1756*	ENST00000262367	NM_004380.2	1756	Cag/Tag						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47129620	47129623	+	frameshift_variant	Frame_Shift_Del	DEL	AGGT	AGGT	-			P-0006114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	318	387	0	ENST00000409792.3:c.5257_5260del	p.Thr1753ValfsTer14	p.T1753Vfs*14	ENST00000409792	NM_014159.6	1753	ACCTgt/gt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	109	570	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0005102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	184	688	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2979407	2979407	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	202	718	2	ENST00000396946.4:c.840C>A	p.Asn280Lys	p.N280K	ENST00000396946	NM_032415.4	280	aaC/aaA						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67457304	67457304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	247	717	0	ENST00000327367.4:c.278G>T	p.Arg93Leu	p.R93L	ENST00000327367	NM_005902.3	93	cGa/cTa						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45368214	45368214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	127	607	0	ENST00000262160.6:c.1388G>T	p.Cys463Phe	p.C463F	ENST00000262160	NM_005901.5	463	tGc/tTc						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47041703	47041716	+	frameshift_variant	Frame_Shift_Del	DEL	ACAAGACCAAGACA	ACAAGACCAAGACA	-			P-0005102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	154	498	0	ENST00000329236.7:c.1694_1707del	p.His565ArgfsTer25	p.H565Rfs*25	ENST00000329236	NM_001204466.1	565	cACAAGACCAAGACA/c						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0008029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	49	314	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
PMS1	5378	MSKCC	GRCh37	2	190728826	190728826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	28	225	1	ENST00000441310.2:c.2214G>T	p.Met738Ile	p.M738I	ENST00000441310	NM_000534.4	738	atG/atT						NEWRECORD																																																																									
CDKN2B	1030	MSKCC	GRCh37	9	22006198	22006198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	26	290	0	ENST00000276925.6:c.205G>T	p.Gly69Cys	p.G69C	ENST00000276925	NM_004936.3	69	Ggc/Tgc						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108186756	108186756	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	51	473	0	ENST00000278616.4:c.6114C>G	p.His2038Gln	p.H2038Q	ENST00000278616	NM_000051.3	2038	caC/caG						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0007627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	757	210	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27099851	27099851	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	307	270	0	ENST00000324856.7:c.3730C>G	p.Pro1244Ala	p.P1244A	ENST00000324856	NM_006015.4	1244	Ccc/Gcc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151868348	151868348	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0007627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	503	332	1	ENST00000262189.6:c.9453+1G>A		p.X3151_splice	ENST00000262189	NM_170606.2	3151							NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108213948	108213948	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0007627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	239	248	0	ENST00000278616.4:c.8269-1G>A		p.X2757_splice	ENST00000278616	NM_000051.3	2757							NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47699369	47699369	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	455	497	0	ENST00000347630.2:c.139G>T	p.Glu47Ter	p.E47*	ENST00000347630	NM_001007230.1	47	Gaa/Taa						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29528172	29528173	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0007627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	372	331	0	ENST00000358273.4:c.1181_1182del	p.Phe394Ter	p.F394*	ENST00000358273	NM_001042492.2	394	TTt/t						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	248	436	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0005821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	76	425	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112103088	112103088	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0005821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	82	379	0	ENST00000257430.4:c.422+1G>A		p.X141_splice	ENST00000257430	NM_000038.5	141							NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52643771	52643771	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	108	473	0	ENST00000394830.3:c.2125del	p.Ile709PhefsTer5	p.I709Ffs*5	ENST00000394830	NM_018313.4	709	Att/tt						NEWRECORD																																																																									
TNFAIP3	7128	MSKCC	GRCh37	6	138200380	138200380	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	111	302	0	ENST00000237289.4:c.1798G>C	p.Asp600His	p.D600H	ENST00000237289	NM_001270507.1	600	Gac/Cac						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10599876	10599879	+	frameshift_variant	Frame_Shift_Del	DEL	TAGA	TAGA	-			P-0005871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	297	599	0	ENST00000171111.5:c.1697_1700delTCTA	p.Ile566ThrfsTer28	p.I566Tfs*28	ENST00000171111	NM_203500.1	566	aTCTAc/ac						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37879601	37879602	+	missense_variant	Missense_Mutation	DNP	TT	TT	AG			P-0005871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	174	296	0	ENST00000269571.5:c.1976_1977delinsAG	p.Val659Glu	p.V659E	ENST00000269571		659	gTT/gAG						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0008079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	350	586	6	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173830	112173830	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	120	342	0	ENST00000257430.4:c.2539G>T	p.Glu847Ter	p.E847*	ENST00000257430	NM_000038.5	847	Gaa/Taa						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135771821	135771821	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	116	621	0	ENST00000298552.3:c.3296A>G	p.Lys1099Arg	p.K1099R	ENST00000298552	NM_001162426.1	1099	aAg/aGg						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68857396	68857396	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	85	460	0	ENST00000261769.5:c.2031A>C	p.Gln677His	p.Q677H	ENST00000261769	NM_004360.3	677	caA/caC						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604715	48604715	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	186	414	0	ENST00000342988.3:c.1537T>C	p.Tyr513His	p.Y513H	ENST00000342988	NM_005359.5	513	Tac/Cac						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10251528	10251528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	87	472	0	ENST00000340748.4:c.3404A>C	p.Lys1135Thr	p.K1135T	ENST00000340748		1135	aAg/aCg						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42042300	42042301	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0008079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	77	856	1	ENST00000219905.7:c.6499_6500del	p.Leu2167GlyfsTer27	p.L2167Gfs*27	ENST00000219905	NM_001164273.1	2165	gaCTct/gact						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	337	345	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0007170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	178	490	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212248481	212248481	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1217	170	608	1	ENST00000342788.4:c.3786C>A	p.Tyr1262Ter	p.Y1262*	ENST00000342788	NM_005235.2	1262	taC/taA						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8504347	8504347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	136	477	0	ENST00000356435.5:c.1736G>T	p.Ser579Ile	p.S579I	ENST00000356435		579	aGc/aTc						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133219437	133219437	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	147	589	0	ENST00000320574.5:c.4697G>T	p.Arg1566Ile	p.R1566I	ENST00000320574	NM_006231.2	1566	aGa/aTa						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67457600	67457600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	95	328	0	ENST00000327367.4:c.410C>T	p.Pro137Leu	p.P137L	ENST00000327367	NM_005902.3	137	cCt/cTt						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63410352	63410352	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	196	627	0	ENST00000330258.3:c.2815G>T	p.Glu939Ter	p.E939*	ENST00000330258	NM_152424.3	939	Gaa/Taa						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15365032	15365033	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0007170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	243	474	0	ENST00000263377.2:c.2088_2089delinsTT	p.Lys696_Gly697delinsAsnCys	p.K696_G697delinsNC	ENST00000263377	NM_058243.2	696	aaGGgc/aaTTgc						NEWRECORD																																																																									
MITF	4286	MSKCC	GRCh37	3	69990481	69990481	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs201247895		P-0004728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	318	271	0	ENST00000352241.4:c.761C>T	p.Thr254Met	p.T254M	ENST00000352241	NM_198159.2	254	aCg/aTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0006721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	201	690	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
ERG	2078	MSKCC	GRCh37	21	39775569	39775569	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	210	448	0	ENST00000288319.7:c.451G>C	p.Gly151Arg	p.G151R	ENST00000288319	NM_182918.3	151	Ggc/Cgc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175498	112175498	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	175	437	0	ENST00000257430.4:c.4207del	p.Ser1403AlafsTer12	p.S1403Afs*12	ENST00000257430	NM_000038.5	1403	Agc/gc						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25967012	25967013	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAGTTCCAGTGTGGGGCCCTTT			P-0006721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	80	503	0	ENST00000435504.4:c.2193_2194insAAAGGGCCCCACACTGGAACTGG	p.Ala732LysfsTer75	p.A732Kfs*75	ENST00000435504		731	-/AAAGGGCCCCACACTGGAACTGG						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212566817	212566817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	77	307	0	ENST00000342788.4:c.1364C>A	p.Ala455Glu	p.A455E	ENST00000342788	NM_005235.2	455	gCa/gAa						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81355298	81355298	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	106	324	0	ENST00000222390.5:c.1076G>T	p.Gly359Val	p.G359V	ENST00000222390	NM_000601.4	359	gGg/gTg						NEWRECORD																																																																									
NBN	4683	MSKCC	GRCh37	8	90993072	90993072	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	44	185	0	ENST00000265433.3:c.370G>C	p.Gly124Arg	p.G124R	ENST00000265433	NM_002485.4	124	Ggg/Cgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578476	7578476	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	89	252	0	ENST00000269305.4:c.454C>A	p.Pro152Thr	p.P152T	ENST00000269305	NM_001126112.2	152	Ccg/Acg						NEWRECORD																																																																									
PIK3R2	5296	MSKCC	GRCh37	19	18266835	18266835	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	39	126	0	ENST00000222254.8:c.146G>C	p.Arg49Pro	p.R49P	ENST00000222254	NM_005027.3	49	cGc/cCc						NEWRECORD																																																																									
ICOSLG	23308	MSKCC	GRCh37	21	45651210	45651210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	71	253	0	ENST00000407780.3:c.815C>A	p.Ala272Asp	p.A272D	ENST00000407780	NM_001283052.1	272	gCc/gAc						NEWRECORD																																																																									
GATA1	2623	MSKCC	GRCh37	X	48650778	48650778	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	109	409	2	ENST00000376670.3:c.647G>T	p.Arg216Leu	p.R216L	ENST00000376670	NM_002049.3	216	cGg/cTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0007120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	1057	676	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0007120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	548	600	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591898	48591898	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	931	594	0	ENST00000342988.3:c.1061T>G	p.Val354Gly	p.V354G	ENST00000342988	NM_005359.5	354	gTg/gGg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0006002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	87	352	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578415	7578415	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	74	397	0	ENST00000269305.4:c.515T>A	p.Val172Asp	p.V172D	ENST00000269305	NM_001126112.2	172	gTt/gAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0008748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	169	529	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	260	721	0	ENST00000269305.4:c.856G>C	p.Glu286Gln	p.E286Q	ENST00000269305	NM_001126112.2	286	Gaa/Caa						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2112555	2112555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1144	153	761	1	ENST00000219476.3:c.1315G>A	p.Asp439Asn	p.D439N	ENST00000219476	NM_000548.3	439	Gac/Aac						NEWRECORD																																																																									
SUZ12	23512	MSKCC	GRCh37	17	30322752	30322752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	85	551	0	ENST00000322652.5:c.1765C>T	p.Pro589Ser	p.P589S	ENST00000322652	NM_015355.2	589	Cct/Tct						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	125	341	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0006469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	458	559	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	203	528	1	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0006469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	143	305	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	657	373	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50444408	50444408	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	148	306	0	ENST00000331340.3:c.338C>A	p.Pro113His	p.P113H	ENST00000331340	NM_006060.4	113	cCt/cAt						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45422959	45422959	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	177	510	3	ENST00000262160.6:c.169C>T	p.Arg57Ter	p.R57*	ENST00000262160	NM_005901.5	57	Cga/Tga						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0007786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	21	177	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0007786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	37	324	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519972		P-0007786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	43	373	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187521400	187521400	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	40	284	0	ENST00000441802.2:c.11755A>T	p.Asn3919Tyr	p.N3919Y	ENST00000441802	NM_005245.3	3919	Aat/Tat						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061481	38061481	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	24	254	0	ENST00000250448.2:c.508A>G	p.Lys170Glu	p.K170E	ENST00000250448	NM_004496.3	170	Aag/Gag						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5078403	5078403	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	24	293	0	ENST00000381652.3:c.2090T>G	p.Leu697Arg	p.L697R	ENST00000381652	NM_004972.3	697	cTt/cGt						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1118	227	329	1	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27089554	27089554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	112	414	2	ENST00000324856.7:c.2510C>T	p.Ala837Val	p.A837V	ENST00000324856	NM_006015.4	837	gCc/gTc						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65305328	65305328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	278	583	0	ENST00000342505.4:c.2800C>T	p.His934Tyr	p.H934Y	ENST00000342505	NM_002227.2	934	Cat/Tat						NEWRECORD																																																																									
IKBKE	9641	MSKCC	GRCh37	1	206666608	206666608	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	195	341	0	ENST00000367120.3:c.1942G>T	p.Glu648Ter	p.E648*	ENST00000367120	NM_014002.3	648	Gag/Tag						NEWRECORD																																																																									
XPO1	7514	MSKCC	GRCh37	2	61719588	61719588	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	101	377	0	ENST00000401558.2:c.1595G>C	p.Arg532Thr	p.R532T	ENST00000401558	NM_003400.3	532	aGa/aCa						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55152080	55152080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	77	388	0	ENST00000257290.5:c.2512G>A	p.Gly838Ser	p.G838S	ENST00000257290	NM_006206.4	838	Ggc/Agc						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	149997485	149997485	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	94	333	0	ENST00000253339.5:c.2794G>C	p.Asp932His	p.D932H	ENST00000253339		932	Gat/Cat						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81374320	81374320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	130	326	0	ENST00000222390.5:c.742G>A	p.Glu248Lys	p.E248K	ENST00000222390	NM_000601.4	248	Gaa/Aaa						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118367074	118367074	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	42	265	0	ENST00000534358.1:c.5656A>T	p.Ser1886Cys	p.S1886C	ENST00000534358	NM_005933.3	1886	Agt/Tgt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49444726	49444726	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1122	114	286	0	ENST00000301067.7:c.2740G>T	p.Glu914Ter	p.E914*	ENST00000301067	NM_003482.3	914	Gag/Tag						NEWRECORD																																																																									
YES1	7525	MSKCC	GRCh37	18	756598	756598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2650	217	391	0	ENST00000314574.4:c.230C>T	p.Ser77Leu	p.S77L	ENST00000314574	NM_005433.3	77	tCa/tTa						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42799281	42799281	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	82	135	0	ENST00000575354.2:c.4765G>C	p.Glu1589Gln	p.E1589Q	ENST00000575354	NM_015125.3	1589	Gag/Cag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578264	7578265	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	399	459	1	ENST00000269305.4:c.584_585delinsAA	p.Ile195Lys	p.I195K	ENST00000269305	NM_001126112.2	195	aTC/aAA						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0009362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	71	214	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0009362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	184	259	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0009362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	68	265	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40980849	40980849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	292	327	0	ENST00000373198.4:c.1637G>A	p.Arg546Gln	p.R546Q	ENST00000373198	NM_133170.3	546	cGg/cAg						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16259729	16259729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	141	334	0	ENST00000375759.3:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000375759	NM_015001.2	2332	Cgc/Tgc						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2958190	2958190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	167	334	0	ENST00000396946.4:c.2542C>T	p.Arg848Cys	p.R848C	ENST00000396946	NM_032415.4	848	Cgc/Tgc						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50467763	50467763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	72	279	0	ENST00000331340.3:c.998C>T	p.Thr333Met	p.T333M	ENST00000331340	NM_006060.4	333	aCg/aTg						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88678541	88678541	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145157285		P-0009362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	61	220	0	ENST00000360948.2:c.995C>T	p.Thr332Met	p.T332M	ENST00000360948	NM_001012338.2	332	aCg/aTg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48584605	48584612	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TACCATCA	TACCATCA	-			P-0009362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	36	297	0	ENST00000342988.3:c.780_787del	p.Tyr260Ter	p.Y260*	ENST00000342988	NM_005359.5	260	TACCATCAt/t						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	129	524	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123184038	123184038	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0005784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	109	504	0	ENST00000218089.9:c.896A>G	p.Asp299Gly	p.D299G	ENST00000218089	NM_001042749.1	299	gAt/gGt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	97	374	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0005849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	366	572	1	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc						NEWRECORD																																																																									
TNFRSF14	8764	MSKCC	GRCh37	1	2494680	2494680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1288	86	503	1	ENST00000355716.4:c.820C>T	p.Pro274Ser	p.P274S	ENST00000355716	NM_003820.2	274	Ccc/Tcc						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	348185	348185	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	216	406	2	ENST00000262320.3:c.1321G>T	p.Ala441Ser	p.A441S	ENST00000262320	NM_003502.3	441	Gcc/Tcc						NEWRECORD																																																																									
PDPK1	5170	MSKCC	GRCh37	16	2647164	2647164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	276	520	2	ENST00000342085.4:c.1442G>T	p.Gly481Val	p.G481V	ENST00000342085	NM_002613.4	481	gGa/gTa						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207020	1207020	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	277	491	0	ENST00000326873.7:c.108C>G	p.Tyr36Ter	p.Y36*	ENST00000326873	NM_000455.4	36	taC/taG						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610343	10610343	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	360	562	0	ENST00000171111.5:c.367G>T	p.Val123Leu	p.V123L	ENST00000171111	NM_203500.1	123	Gtg/Ttg						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9546799	9546799	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	317	544	0	ENST00000353224.5:c.1223C>A	p.Ser408Tyr	p.S408Y	ENST00000353224	NM_177990.2	408	tCc/tAc						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50468103	50468104	+	missense_variant	Missense_Mutation	DNP	GG	GG	TC			P-0005849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	252	399	1	ENST00000331340.3:c.1338_1339delinsTC	p.Gln446_Asp447delinsHisHis	p.Q446_D447delinsHH	ENST00000331340	NM_006060.4	446	caGGac/caTCac						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	39	423	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32163606	32163606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	21	331	0	ENST00000375023.3:c.5620G>A	p.Gly1874Arg	p.G1874R	ENST00000375023	NM_004557.3	1874	Gga/Aga						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145738828	145738828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201883228		P-0009841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	52	235	3	ENST00000428558.2:c.2237C>T	p.Ala746Val	p.A746V	ENST00000428558	NM_004260.3	746	gCg/gTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578485	7578485	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	78	484	0	ENST00000269305.4:c.445del	p.Ser149ProfsTer21	p.S149Pfs*21	ENST00000269305	NM_001126112.2	149	Tcc/cc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0009172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	131	383	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0009172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	162	495	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	175	296	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220400	1220400	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	261	430	0	ENST00000326873.7:c.493G>T	p.Glu165Ter	p.E165*	ENST00000326873	NM_000455.4	165	Gag/Tag						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108218084	108218084	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	72	246	0	ENST00000278616.4:c.8663T>C	p.Ile2888Thr	p.I2888T	ENST00000278616	NM_000051.3	2888	aTa/aCa						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89468494	89468494	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	122	356	0	ENST00000336596.2:c.2028G>T	p.Gln676His	p.Q676H	ENST00000336596	NM_005233.5	676	caG/caT						NEWRECORD																																																																									
ETV1	2115	MSKCC	GRCh37	7	13971126	13971126	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0009256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	131	168	0	ENST00000405192.2:c.802+1G>T		p.X268_splice	ENST00000405192	NM_001163147.1	268							NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133760981	133760981	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	301	410	0	ENST00000318560.5:c.3304G>T	p.Ala1102Ser	p.A1102S	ENST00000318560	NM_005157.4	1102	Gcg/Tcg						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43612054	43612054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	386	597	0	ENST00000355710.3:c.2159C>T	p.Pro720Leu	p.P720L	ENST00000355710	NM_020975.4	720	cCt/cTt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108199763	108199763	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	171	234	0	ENST00000278616.4:c.7105G>T	p.Gly2369Ter	p.G2369*	ENST00000278616	NM_000051.3	2369	Gga/Tga						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3900321	3900321	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	261	364	0	ENST00000262367.5:c.775G>T	p.Ala259Ser	p.A259S	ENST00000262367	NM_004380.2	259	Gca/Tca						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63412676	63412676	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	166	395	0	ENST00000330258.3:c.491A>T	p.Lys164Met	p.K164M	ENST00000330258	NM_152424.3	164	aAg/aTg						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151880169	151880169	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	111	342	0	ENST00000262189.6:c.5155C>T	p.Gln1719Ter	p.Q1719*	ENST00000262189	NM_170606.2	1719	Cag/Tag						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151880175	151880175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	104	332	0	ENST00000262189.6:c.5149A>G	p.Lys1717Glu	p.K1717E	ENST00000262189	NM_170606.2	1717	Aaa/Gaa						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061249	38061249	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	131	334	0	ENST00000250448.2:c.740A>T	p.His247Leu	p.H247L	ENST00000250448	NM_004496.3	247	cAc/cTc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0008683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	12	273	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	87	732	2	ENST00000374080.3:c.130G>A	p.Gly44Ser	p.G44S	ENST00000374080		44	Ggt/Agt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175240	112175240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	60	296	0	ENST00000257430.4:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000257430	NM_000038.5	1317	Gaa/Taa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs770248150		P-0008683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	65	526	0	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720650	89720650	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006248-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	14	97	0	ENST00000371953.3:c.802-1G>A		p.X268_splice	ENST00000371953	NM_000314.4	268							NEWRECORD																																																																									
NCOA3	8202	MSKCC	GRCh37	20	46256365	46256365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006248-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	359	724	0	ENST00000371998.3:c.593G>A	p.Arg198His	p.R198H	ENST00000371998		198	cGt/cAt						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115720	8115815	+	inframe_deletion	In_Frame_Del	DEL	ATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAG	ATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAG	-			P-0006248-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	62	500	0	ENST00000346208.3:c.1067_1162del	p.Met356_Lys387del	p.M356_K387del	ENST00000346208		356	ATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAG/-						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112177500	112177500	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	279	282	2	ENST00000257430.4:c.6209G>T	p.Gly2070Val	p.G2070V	ENST00000257430	NM_000038.5	2070	gGc/gTc						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87570235	87570235	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	89	154	0	ENST00000277120.3:c.1975A>C	p.Asn659His	p.N659H	ENST00000277120		659	Aac/Cac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0009751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	189	354	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175772	112175772	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	50	301	0	ENST00000257430.4:c.4483del	p.Ser1495ValfsTer12	p.S1495Vfs*12	ENST00000257430	NM_000038.5	1494	gAa/ga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579317	7579317	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	134	325	0	ENST00000269305.4:c.370T>G	p.Cys124Gly	p.C124G	ENST00000269305	NM_001126112.2	124	Tgc/Ggc						NEWRECORD																																																																									
STAT5A	6776	MSKCC	GRCh37	17	40459687	40459687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1206	138	784	2	ENST00000345506.4:c.1852C>T	p.Arg618Cys	p.R618C	ENST00000345506	NM_003152.3	618	Cgc/Tgc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48593466	48593466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	68	371	0	ENST00000342988.3:c.1217C>A	p.Ala406Glu	p.A406E	ENST00000342988	NM_005359.5	406	gCg/gAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173902	112173902	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	56	290	0	ENST00000257430.4:c.2612del	p.Gly871GlufsTer45	p.G871Efs*45	ENST00000257430	NM_000038.5	871	Gga/ga						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	134	335	1	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat						NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36935319	36935319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	282	677	0	ENST00000361632.4:c.1408G>A	p.Ala470Thr	p.A470T	ENST00000361632		470	Gcg/Acg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112154678	112154678	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	219	377	0	ENST00000257430.4:c.949T>C	p.Ser317Pro	p.S317P	ENST00000257430	NM_000038.5	317	Tca/Cca						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	259	638	0	ENST00000347630.2:c.259T>G	p.Tyr87Asp	p.Y87D	ENST00000347630	NM_001007230.1	87	Tac/Gac						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2103355	2103410	+	frameshift_variant	Frame_Shift_Del	DEL	GCACTCTGGAAGGCGGTCGCGGATCTGTTGCAGCCGGAGCGGCCGCTGGAGGCCCG	GCACTCTGGAAGGCGGTCGCGGATCTGTTGCAGCCGGAGCGGCCGCTGGAGGCCCG	-			P-0008098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	120	388	0	ENST00000219476.3:c.242_297del	p.Leu81ArgfsTer26	p.L81Rfs*26	ENST00000219476	NM_000548.3	80	GCACTCTGGAAGGCGGTCGCGGATCTGTTGCAGCCGGAGCGGCCGCTGGAGGCCCGg/g						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	402	303	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0006273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	442	395	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587776783		P-0006273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	291	183	0	ENST00000267163.4:c.1215+1G>A		p.X405_splice	ENST00000267163	NM_000321.2	405							NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47142954	47142954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	187	328	0	ENST00000409792.3:c.5009G>T	p.Arg1670Ile	p.R1670I	ENST00000409792	NM_014159.6	1670	aGa/aTa						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55131184	55131184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	228	387	0	ENST00000257290.5:c.727G>C	p.Val243Leu	p.V243L	ENST00000257290	NM_006206.4	243	Gtt/Ctt						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3900997	3900997	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	186	344	0	ENST00000262367.5:c.99G>T	p.Leu33Phe	p.L33F	ENST00000262367	NM_004380.2	33	ttG/ttT						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72992240	72992240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	262	518	0	ENST00000268489.5:c.1805C>T	p.Ala602Val	p.A602V	ENST00000268489	NM_006885.3	602	gCa/gTa						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44969426	44969426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	345	517	0	ENST00000377967.4:c.4108G>T	p.Glu1370Ter	p.E1370*	ENST00000377967	NM_021140.2	1370	Gaa/Taa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0005980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	268	488	1	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT						NEWRECORD																																																																									
IFNGR1	3459	MSKCC	GRCh37	6	137519767	137519767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	58	172	0	ENST00000367739.4:c.871G>A	p.Val291Ile	p.V291I	ENST00000367739	NM_000416.2	291	Gta/Ata						NEWRECORD																																																																									
KLF4	9314	MSKCC	GRCh37	9	110249690	110249690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	105	481	0	ENST00000374672.4:c.985G>T	p.Asp329Tyr	p.D329Y	ENST00000374672	NM_004235.4	329	Gac/Tac						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99491805	99491805	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0005980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	94	473	0	ENST00000268035.6:c.3590C>A	p.Ser1197Tyr	p.S1197Y	ENST00000268035	NM_000875.3	1197	tCc/tAc						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47164317	47164317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	164	400	0	ENST00000409792.3:c.1809del	p.Asn604IlefsTer18	p.N604Ifs*18	ENST00000409792	NM_014159.6	603	atT/at						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89685315	89685315	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs876658153		P-0009564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	112	325	0	ENST00000371953.3:c.209+1G>T		p.X70_splice	ENST00000371953	NM_000314.4	70							NEWRECORD																																																																									
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913476		P-0009564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	354	523	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8105965	8105965	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	276	297	0	ENST00000346208.3:c.785A>T	p.Glu262Val	p.E262V	ENST00000346208		262	gAg/gTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	143	522	0	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag						NEWRECORD																																																																									
MAP2K1	5604	MSKCC	GRCh37	15	66729094	66729099	+	inframe_deletion	In_Frame_Del	DEL	TGGAGA	TGGAGA	-			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	77	440	0	ENST00000307102.5:c.303_308delGGAGAT	p.Glu102_Ile103del	p.E102_I103del	ENST00000307102	NM_002755.3	101	cTGGAGAtc/ctc						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs760640852		P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	40	102	0	ENST00000304494.5:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000304494	NM_000077.4	74	Gac/Tac						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47163373	47163373	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	67	339	0	ENST00000409792.3:c.2753C>G	p.Ser918Ter	p.S918*	ENST00000409792	NM_014159.6	918	tCa/tGa						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70119789	70119789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	52	468	0	ENST00000245479.2:c.791G>C	p.Arg264Thr	p.R264T	ENST00000245479	NM_000346.3	264	aGa/aCa						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118344314	118344314	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	29	226	0	ENST00000534358.1:c.2440C>T	p.Gln814Ter	p.Q814*	ENST00000534358	NM_005933.3	814	Cag/Tag						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27097687	27097687	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	71	454	0	ENST00000324856.7:c.3276G>C	p.Leu1092Phe	p.L1092F	ENST00000324856	NM_006015.4	1092	ttG/ttC						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16259249	16259249	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	33	266	0	ENST00000375759.3:c.6514G>C	p.Glu2172Gln	p.E2172Q	ENST00000375759	NM_015001.2	2172	Gag/Cag						NEWRECORD																																																																									
RIT1	6016	MSKCC	GRCh37	1	155874596	155874596	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	89	517	0	ENST00000368323.3:c.164-1G>A		p.X55_splice	ENST00000368323	NM_006912.5	55							NEWRECORD																																																																									
RFWD2	64326	MSKCC	GRCh37	1	175956187	175956187	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	121	483	0	ENST00000367669.3:c.2025G>T	p.Leu675Phe	p.L675F	ENST00000367669	NM_022457.5	675	ttG/ttT						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243736256	243736256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	72	452	0	ENST00000263826.5:c.791C>T	p.Ser264Phe	p.S264F	ENST00000263826	NM_005465.4	264	tCc/tTc						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29455312	29455312	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	38	257	0	ENST00000389048.3:c.2490G>A	p.Met830Ile	p.M830I	ENST00000389048	NM_004304.4	830	atG/atA						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29541192	29541192	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	64	506	1	ENST00000389048.3:c.1625C>A	p.Pro542Gln	p.P542Q	ENST00000389048	NM_004304.4	542	cCg/cAg						NEWRECORD																																																																									
MSH2	4436	MSKCC	GRCh37	2	47643501	47643501	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	79	565	0	ENST00000233146.2:c.1009C>G	p.Gln337Glu	p.Q337E	ENST00000233146	NM_000251.2	337	Caa/Gaa						NEWRECORD																																																																									
PMS1	5378	MSKCC	GRCh37	2	190738248	190738248	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	45	253	0	ENST00000441310.2:c.2500G>C	p.Glu834Gln	p.E834Q	ENST00000441310	NM_000534.4	834	Gaa/Caa						NEWRECORD																																																																									
CASP8	841	MSKCC	GRCh37	2	202149928	202149928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	48	427	0	ENST00000358485.4:c.1369G>A	p.Asp457Asn	p.D457N	ENST00000358485	NM_001080125.1	457	Gac/Aac						NEWRECORD																																																																									
MST1R	4486	MSKCC	GRCh37	3	49932898	49932898	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	75	589	0	ENST00000296474.3:c.3046G>C	p.Asp1016His	p.D1016H	ENST00000296474	NM_002447.2	1016	Gac/Cac						NEWRECORD																																																																									
MST1R	4486	MSKCC	GRCh37	3	49940549	49940549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	54	565	1	ENST00000296474.3:c.494C>T	p.Ser165Leu	p.S165L	ENST00000296474	NM_002447.2	165	tCa/tTa						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89391177	89391177	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	69	282	0	ENST00000336596.2:c.1243G>T	p.Val415Leu	p.V415L	ENST00000336596	NM_005233.5	415	Gtg/Ttg						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134880945	134880945	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	87	451	0	ENST00000398015.3:c.1508T>C	p.Val503Ala	p.V503A	ENST00000398015	NM_004441.4	503	gTg/gCg						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134911617	134911617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	61	373	0	ENST00000398015.3:c.2082G>A	p.Met694Ile	p.M694I	ENST00000398015	NM_004441.4	694	atG/atA						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178951994	178951994	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	97	433	0	ENST00000263967.3:c.3049G>C	p.Asp1017His	p.D1017H	ENST00000263967	NM_006218.2	1017	Gat/Cat						NEWRECORD																																																																									
EIF4A2	1974	MSKCC	GRCh37	3	186503747	186503747	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	153	624	0	ENST00000323963.5:c.424C>G	p.Arg142Gly	p.R142G	ENST00000323963		142	Cga/Gga						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149497194	149497194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	139	360	1	ENST00000261799.4:c.3124C>A	p.Pro1042Thr	p.P1042T	ENST00000261799	NM_002609.3	1042	Ccc/Acc						NEWRECORD																																																																									
HIST1H3B	8358	MSKCC	GRCh37	6	26032171	26032171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	184	671	0	ENST00000244661.2:c.118C>T	p.His40Tyr	p.H40Y	ENST00000244661	NM_003537.3	40	Cac/Tac						NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	162206891	162206891	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	50	379	0	ENST00000366898.1:c.784G>C	p.Asp262His	p.D262H	ENST00000366898	NM_004562.2	262	Gac/Cac						NEWRECORD																																																																									
ETV1	2115	MSKCC	GRCh37	7	14017058	14017058	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	57	354	0	ENST00000405192.2:c.229G>A	p.Glu77Lys	p.E77K	ENST00000405192	NM_001163147.1	77	Gaa/Aaa						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50450274	50450274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	48	451	0	ENST00000331340.3:c.458C>T	p.Ser153Leu	p.S153L	ENST00000331340	NM_006060.4	153	tCa/tTa						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81381564	81381564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	96	372	0	ENST00000222390.5:c.497G>T	p.Ser166Ile	p.S166I	ENST00000222390	NM_000601.4	166	aGc/aTc						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43619249	43619249	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	44	380	0	ENST00000355710.3:c.2932G>C	p.Glu978Gln	p.E978Q	ENST00000355710	NM_020975.4	978	Gag/Cag						NEWRECORD																																																																									
IGF2	3481	MSKCC	GRCh37	11	2161487	2161487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	45	532	0	ENST00000434045.2:c.40G>A	p.Glu14Lys	p.E14K	ENST00000434045	NM_001127598.1	14	Gag/Aag						NEWRECORD																																																																									
BIRC3	330	MSKCC	GRCh37	11	102195876	102195876	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	104	627	0	ENST00000263464.3:c.636G>C	p.Leu212Phe	p.L212F	ENST00000263464	NM_001165.4	212	ttG/ttC						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118344204	118344204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	37	334	0	ENST00000534358.1:c.2330C>T	p.Ser777Phe	p.S777F	ENST00000534358	NM_005933.3	777	tCt/tTt						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18644406	18644406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	111	472	2	ENST00000266497.5:c.2584G>T	p.Gly862Cys	p.G862C	ENST00000266497		862	Ggc/Tgc						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56495711	56495711	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	57	325	0	ENST00000267101.3:c.3901C>G	p.Gln1301Glu	p.Q1301E	ENST00000267101	NM_001982.3	1301	Cag/Gag						NEWRECORD																																																																									
SH2B3	10019	MSKCC	GRCh37	12	111884834	111884834	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs181079548		P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	82	569	1	ENST00000341259.2:c.923G>A	p.Arg308Gln	p.R308Q	ENST00000341259	NM_005475.2	308	cGa/cAa						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32932056	32932056	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	46	391	0	ENST00000380152.3:c.7795G>C	p.Glu2599Gln	p.E2599Q	ENST00000380152		2599	Gaa/Caa						NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103527662	103527662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	87	345	0	ENST00000355739.4:c.2970G>T	p.Gln990His	p.Q990H	ENST00000355739	NM_000123.3	990	caG/caT						NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45007752	45007752	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	87	411	1	ENST00000558401.1:c.199G>T	p.Glu67Ter	p.E67*	ENST00000558401	NM_004048.2	67	Gaa/Taa						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2129378	2129378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	37	484	1	ENST00000219476.3:c.3233G>A	p.Arg1078Gln	p.R1078Q	ENST00000219476	NM_000548.3	1078	cGg/cAg						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9923342	9923342	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	69	566	0	ENST00000330684.3:c.1945C>G	p.Leu649Val	p.L649V	ENST00000330684	NM_001134407.1	649	Ctg/Gtg						NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14029521	14029521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	42	281	1	ENST00000311895.7:c.1732G>T	p.Val578Leu	p.V578L	ENST00000311895	NM_005236.2	578	Gtg/Ttg						NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56875633	56875633	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	78	494	0	ENST00000308159.5:c.2237C>G	p.Ser746Ter	p.S746*	ENST00000308159	NM_014669.4	746	tCa/tGa						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89346246	89346246	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	88	384	0	ENST00000301030.4:c.6704C>A	p.Pro2235Gln	p.P2235Q	ENST00000301030	NM_001256183.1	2235	cCg/cAg						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89347050	89347050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	80	573	0	ENST00000301030.4:c.5900C>T	p.Ser1967Phe	p.S1967F	ENST00000301030	NM_001256183.1	1967	tCt/tTt						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12011209	12011209	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	43	311	0	ENST00000353533.5:c.616G>T	p.Gly206Cys	p.G206C	ENST00000353533	NM_003010.3	206	Ggc/Tgc						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15965093	15965093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	42	261	0	ENST00000268712.3:c.5503G>C	p.Asp1835His	p.D1835H	ENST00000268712	NM_006311.3	1835	Gat/Cat						NEWRECORD																																																																									
STAT5B	6777	MSKCC	GRCh37	17	40353809	40353809	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	100	577	1	ENST00000293328.3:c.2311G>T	p.Glu771Ter	p.E771*	ENST00000293328	NM_012448.3	771	Gag/Tag						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41245326	41245326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	64	490	0	ENST00000357654.3:c.2222C>T	p.Ser741Phe	p.S741F	ENST00000357654	NM_007294.3	741	tCt/tTt						NEWRECORD																																																																									
SRSF2	6427	MSKCC	GRCh37	17	74733240	74733240	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	66	402	0	ENST00000359995.5:c.3G>A	p.Met1?	p.M1?	ENST00000359995	NM_001195427.1	1	atG/atA						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48584530	48584530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	112	409	1	ENST00000342988.3:c.703G>A	p.Glu235Lys	p.E235K	ENST00000342988	NM_005359.5	235	Gaa/Aaa						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10597387	10597387	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150193881		P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	39	451	0	ENST00000171111.5:c.1816G>A	p.Val606Met	p.V606M	ENST00000171111	NM_203500.1	606	Gtg/Atg						NEWRECORD																																																																									
CALR	811	MSKCC	GRCh37	19	13054544	13054544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	89	743	0	ENST00000316448.5:c.1071G>A	p.Met357Ile	p.M357I	ENST00000316448	NM_004343.3	357	atG/atA						NEWRECORD																																																																									
CALR	811	MSKCC	GRCh37	19	13054665	13054665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150264068		P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	98	829	0	ENST00000316448.5:c.1192G>A	p.Glu398Lys	p.E398K	ENST00000316448	NM_004343.3	398	Gag/Aag						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15292577	15292577	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	65	418	2	ENST00000263388.2:c.2602G>T	p.Val868Leu	p.V868L	ENST00000263388	NM_000435.2	868	Gtg/Ttg						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9624805	9624805	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	41	326	0	ENST00000353224.5:c.172T>A	p.Cys58Ser	p.C58S	ENST00000353224	NM_177990.2	58	Tgc/Agc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40899042	40899042	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	92	572	1	ENST00000373198.4:c.2228C>A	p.Thr743Asn	p.T743N	ENST00000373198	NM_133170.3	743	aCc/aAc						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41554419	41554419	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	129	437	0	ENST00000263253.7:c.3505G>C	p.Glu1169Gln	p.E1169Q	ENST00000263253	NM_001429.3	1169	Gag/Cag						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41554476	41554476	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	128	441	0	ENST00000263253.7:c.3562G>C	p.Asp1188His	p.D1188H	ENST00000263253	NM_001429.3	1188	Gat/Cat						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41554499	41554499	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	104	362	0	ENST00000263253.7:c.3585G>C	p.Gln1195His	p.Q1195H	ENST00000263253	NM_001429.3	1195	caG/caC						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39923087	39923087	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	171	362	0	ENST00000378444.4:c.3621delA	p.Lys1207AsnfsTer31	p.K1207Nfs*31	ENST00000378444	NM_001123385.1	1207	aaA/aa						NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48027599	48027599	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	29	244	0	ENST00000234420.5:c.2477A>G	p.His826Arg	p.H826R	ENST00000234420	NM_000179.2	826	cAt/cGt						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87322770	87322770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	45	357	0	ENST00000277120.3:c.371G>A	p.Arg124Gln	p.R124Q	ENST00000277120		124	cGa/cAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577150	7577150	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	146	498	0	ENST00000269305.4:c.788delA	p.Asn263IlefsTer82	p.N263Ifs*82	ENST00000269305	NM_001126112.2	263	aAt/at						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398280	25398281	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0006790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	152	430	1	ENST00000256078.4:c.38_39delinsTT	p.Gly13Val	p.G13V	ENST00000256078	NM_033360.2	13	gGC/gTT						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	54	473	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604778	48604778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767383		P-0009396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1265	80	557	0	ENST00000342988.3:c.1600C>T	p.Gln534Ter	p.Q534*	ENST00000342988	NM_005359.5	534	Cag/Tag						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9916143	9916143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1083	78	560	0	ENST00000330684.3:c.2146G>A	p.Ala716Thr	p.A716T	ENST00000330684	NM_001134407.1	716	Gcc/Acc						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0008944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	208	488	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	185	448	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg						NEWRECORD																																																																									
SHQ1	55164	MSKCC	GRCh37	3	72866458	72866458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	40	514	1	ENST00000325599.8:c.805C>T	p.Arg269Cys	p.R269C	ENST00000325599	NM_018130.2	269	Cgt/Tgt						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66467403	66467403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	151	312	0	ENST00000273854.3:c.866G>T	p.Cys289Phe	p.C289F	ENST00000273854	NM_004439.5	289	tGc/tTc						NEWRECORD																																																																									
PLK2	10769	MSKCC	GRCh37	5	57753381	57753381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	75	438	0	ENST00000274289.3:c.743C>T	p.Ser248Phe	p.S248F	ENST00000274289	NM_006622.3	248	tCt/tTt						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32417827	32417827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	75	425	1	ENST00000332351.3:c.1225C>A	p.Gln409Lys	p.Q409K	ENST00000332351	NM_024426.4	409	Cag/Aag						NEWRECORD																																																																									
FGF4	2249	MSKCC	GRCh37	11	69588157	69588157	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	266	753	0	ENST00000168712.1:c.541C>G	p.Leu181Val	p.L181V	ENST00000168712	NM_002007.2	181	Ctg/Gtg						NEWRECORD																																																																									
SH2B3	10019	MSKCC	GRCh37	12	111885148	111885148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	277	696	0	ENST00000341259.2:c.1036G>A	p.Gly346Arg	p.G346R	ENST00000341259	NM_005475.2	346	Ggg/Agg						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2104319	2104319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	148	546	0	ENST00000219476.3:c.359G>T	p.Arg120Ile	p.R120I	ENST00000219476	NM_000548.3	120	aGa/aTa						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600324	10600324	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0008944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	120	483	2	ENST00000171111.5:c.1531G>T	p.Gly511Cys	p.G511C	ENST00000171111	NM_203500.1	511	Ggc/Tgc						NEWRECORD																																																																									
NF2	4771	MSKCC	GRCh37	22	30035154	30035154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	226	615	0	ENST00000338641.4:c.316G>A	p.Glu106Lys	p.E106K	ENST00000338641	NM_000268.3	106	Gaa/Aaa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	27	407	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0006027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	74	637	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	15	451	0	ENST00000342988.3:c.1157G>T	p.Gly386Val	p.G386V	ENST00000342988	NM_005359.5	386	gGt/gTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	240	507	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0004968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	191	648	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110435689	110435689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	48	260	1	ENST00000375856.3:c.2712G>A	p.Met904Ile	p.M904I	ENST00000375856	NM_003749.2	904	atG/atA						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134898765	134898765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	232	714	0	ENST00000398015.3:c.1823G>T	p.Arg608Leu	p.R608L	ENST00000398015	NM_004441.4	608	cGg/cTg						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149441379	149441379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	236	516	1	ENST00000286301.3:c.1660G>A	p.Glu554Lys	p.E554K	ENST00000286301	NM_005211.3	554	Gag/Aag						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106520054	106520054	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	202	513	0	ENST00000359195.3:c.2482A>T	p.Ile828Phe	p.I828F	ENST00000359195	NM_002649.2	828	Att/Ttt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174113	112174114	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0004968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	146	583	0	ENST00000257430.4:c.2824_2825del	p.Asn942PhefsTer3	p.N942Ffs*3	ENST00000257430	NM_000038.5	941	gAA/g						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63410716	63410716	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	410	432	0	ENST00000330258.3:c.2451del	p.Asp817GlufsTer50	p.D817Efs*50	ENST00000330258	NM_152424.3	817	gaT/ga						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	93973599	93973599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009530-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1291	374	667	0	ENST00000369303.4:c.1777G>A	p.Asp593Asn	p.D593N	ENST00000369303	NM_004440.3	593	Gat/Aat						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139400212	139400212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009530-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	61	344	0	ENST00000277541.6:c.4136C>T	p.Thr1379Met	p.T1379M	ENST00000277541	NM_017617.3	1379	aCg/aTg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009530-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	177	381	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0009530-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	208	386	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17943345	17943345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009530-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	103	471	0	ENST00000458235.1:c.2663G>A	p.Gly888Asp	p.G888D	ENST00000458235	NM_000215.3	888	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0005454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	245	324	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162746132	162746132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	333	352	0	ENST00000367921.3:c.2255G>A	p.Arg752His	p.R752H	ENST00000367921	NM_006182.2	752	cGc/cAc						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0007643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	186	307	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0007643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	270	292	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16254872	16254872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	136	280	0	ENST00000375759.3:c.2137C>T	p.Arg713Trp	p.R713W	ENST00000375759	NM_015001.2	713	Cgg/Tgg						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142261574	142261574	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	123	285	0	ENST00000350721.4:c.3383T>C	p.Leu1128Ser	p.L1128S	ENST00000350721	NM_001184.3	1128	tTg/tCg						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55962438	55962438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	144	303	1	ENST00000263923.4:c.2686C>T	p.Leu896Phe	p.L896F	ENST00000263923	NM_002253.2	896	Ctc/Ttc						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49418448	49418448	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	99	178	0	ENST00000301067.7:c.15965G>T	p.Gly5322Val	p.G5322V	ENST00000301067	NM_003482.3	5322	gGg/gTg						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81972517	81972517	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	139	424	0	ENST00000359376.3:c.3310G>T	p.Val1104Leu	p.V1104L	ENST00000359376	NM_002661.3	1104	Gtg/Ttg						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41568631	41568631	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	146	278	0	ENST00000263253.7:c.4584del	p.Lys1528AsnfsTer13	p.K1528Nfs*13	ENST00000263253	NM_001429.3	1527	agA/ag						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117647458	117647462	+	frameshift_variant	Frame_Shift_Del	DEL	CTGAA	CTGAA	-			P-0007643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	145	448	0	ENST00000368508.3:c.5482_5486del	p.Phe1828SerfsTer6	p.F1828Sfs*6	ENST00000368508	NM_002944.2	1828	TTCAGa/a						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0008879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	93	371	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9546626	9546626	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751328296		P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1105	248	554	0	ENST00000353224.5:c.1396G>A	p.Ala466Thr	p.A466T	ENST00000353224	NM_177990.2	466	Gcc/Acc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	179	300	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc						NEWRECORD																																																																									
MUTYH	4595	MSKCC	GRCh37	1	45800084	45800084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	197	551	0	ENST00000372115.3:c.136G>T	p.Ala46Ser	p.A46S	ENST00000372115	NM_001048171.1	46	Gcc/Tcc						NEWRECORD																																																																									
MLH1	4292	MSKCC	GRCh37	3	37035147	37035147	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	31	140	0	ENST00000231790.2:c.109G>C	p.Glu37Gln	p.E37Q	ENST00000231790	NM_000249.3	37	Gag/Cag						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89448601	89448601	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	122	472	0	ENST00000336596.2:c.1565G>T	p.Arg522Leu	p.R522L	ENST00000336596	NM_005233.5	522	cGc/cTc						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134898825	134898825	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	147	335	0	ENST00000398015.3:c.1882+1G>T		p.X628_splice	ENST00000398015	NM_004441.4	628							NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106157414	106157414	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	105	327	0	ENST00000380013.4:c.2315A>T	p.Glu772Val	p.E772V	ENST00000380013	NM_001127208.2	772	gAa/gTa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173451	112173451	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	43	464	0	ENST00000257430.4:c.2160G>T	p.Met720Ile	p.M720I	ENST00000257430	NM_000038.5	720	atG/atT						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176694659	176694659	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1142	116	534	0	ENST00000439151.2:c.5243G>T	p.Cys1748Phe	p.C1748F	ENST00000439151	NM_022455.4	1748	tGt/tTt						NEWRECORD																																																																									
IRF4	3662	MSKCC	GRCh37	6	401525	401525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	47	348	1	ENST00000380956.4:c.847G>A	p.Asp283Asn	p.D283N	ENST00000380956	NM_001195286.1	283	Gac/Aac						NEWRECORD																																																																									
PMS2	5395	MSKCC	GRCh37	7	6048631	6048631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	66	451	0	ENST00000265849.7:c.20C>T	p.Ser7Leu	p.S7L	ENST00000265849	NM_000535.5	7	tCg/tTg						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50467717	50467717	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1002	122	482	0	ENST00000331340.3:c.952G>C	p.Ala318Pro	p.A318P	ENST00000331340	NM_006060.4	318	Gcc/Ccc						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81335653	81335653	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	104	442	0	ENST00000222390.5:c.1707G>C	p.Gln569His	p.Q569H	ENST00000222390	NM_000601.4	569	caG/caC						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140507759	140507759	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	98	295	1	ENST00000288602.6:c.711+1G>A		p.X237_splice	ENST00000288602	NM_004333.4	237							NEWRECORD																																																																									
EZH2	2146	MSKCC	GRCh37	7	148515124	148515124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	208	533	0	ENST00000320356.2:c.1085G>T	p.Arg362Leu	p.R362L	ENST00000320356	NM_004456.4	362	cGg/cTg						NEWRECORD																																																																									
FGFR1	2260	MSKCC	GRCh37	8	38271672	38271672	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	76	458	0	ENST00000425967.3:c.2277G>C	p.Glu759Asp	p.E759D	ENST00000425967	NM_001174067.1	759	gaG/gaC						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5123003	5123003	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	201	334	1	ENST00000381652.3:c.3060-1G>T		p.X1020_splice	ENST00000381652	NM_004972.3	1020							NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46243857	46243857	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	271	316	0	ENST00000334344.6:c.1951C>T	p.Gln651Ter	p.Q651*	ENST00000334344	NM_152641.2	651	Cag/Tag						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95582004	95582004	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	71	249	0	ENST00000343455.3:c.1907G>C	p.Arg636Thr	p.R636T	ENST00000343455	NM_177438.2	636	aGa/aCa						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11135010	11135010	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	234	386	1	ENST00000344626.4:c.2977G>T	p.Glu993Ter	p.E993*	ENST00000344626	NM_003072.3	993	Gag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0005267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	32	214	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8341947	8341947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	35	142	0	ENST00000356435.5:c.4693G>A	p.Val1565Ile	p.V1565I	ENST00000356435		1565	Gtc/Atc						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70120527	70120527	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0005267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	40	110	0	ENST00000245479.2:c.1529G>C	p.Ter510SerextTer49	p.*510Sext*49	ENST00000245479	NM_000346.3	510	tGa/tCa						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68846080	68846080	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	40	243	0	ENST00000261769.5:c.1051C>T	p.Gln351Ter	p.Q351*	ENST00000261769	NM_004360.3	351	Caa/Taa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577077	7577077	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs748891343		P-0005267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	32	206	0	ENST00000269305.4:c.861G>C	p.Glu287Asp	p.E287D	ENST00000269305	NM_001126112.2	287	gaG/gaC						NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50921160	50921160	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	26	260	0	ENST00000440232.2:c.3280C>T	p.Gln1094Ter	p.Q1094*	ENST00000440232	NM_002691.3	1094	Cag/Tag						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115118932	115118934	+	frameshift_variant	Frame_Shift_Del	DEL	TAA	TAA	AT			P-0005267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	49	148	0	ENST00000257566.3:c.407_409delinsAT	p.Phe136TyrfsTer3	p.F136Yfs*3	ENST00000257566	NM_016569.3	136	tTTAaa/tATaa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	38	239	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27056214	27056214	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	96	263	1	ENST00000324856.7:c.1210C>T	p.Gln404Ter	p.Q404*	ENST00000324856	NM_006015.4	404	Caa/Taa						NEWRECORD																																																																									
PIK3R3	8503	MSKCC	GRCh37	1	46509407	46509407	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	126	354	0	ENST00000262741.5:c.1324G>T	p.Asp442Tyr	p.D442Y	ENST00000262741	NM_003629.3	442	Gac/Tac						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29445247	29445247	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	124	391	0	ENST00000389048.3:c.3478G>C	p.Asp1160His	p.D1160H	ENST00000389048	NM_004304.4	1160	Gac/Cac						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39567804	39567804	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	114	313	0	ENST00000262039.4:c.560T>C	p.Met187Thr	p.M187T	ENST00000262039	NM_002647.2	187	aTg/aCg						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44929498	44929498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	95	243	0	ENST00000377967.4:c.2598G>A	p.Met866Ile	p.M866I	ENST00000377967	NM_021140.2	866	atG/atA						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55948714	55948714	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	107	398	0	ENST00000263923.4:c.3751del	p.Val1251Ter	p.V1251*	ENST00000263923	NM_002253.2	1251	Gta/ta						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs68130327		P-0009343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	72	244	0	ENST00000269305.4:c.532delC	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0008372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	161	426	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25466799	25466799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	234	425	0	ENST00000264709.3:c.1904G>A	p.Arg635Gln	p.R635Q	ENST00000264709	NM_175629.2	635	cGg/cAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0006923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	154	346	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133212487	133212487	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	98	346	0	ENST00000320574.5:c.5802C>G	p.His1934Gln	p.H1934Q	ENST00000320574	NM_006231.2	1934	caC/caG						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70339942	70339942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1243	103	521	0	ENST00000374080.3:c.475C>A	p.Leu159Ile	p.L159I	ENST00000374080		159	Ctc/Atc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	106	318	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
CBFB	865	MSKCC	GRCh37	16	67063312	67063312	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0006497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	314	282	0	ENST00000412916.2:c.2T>A	p.Met1?	p.M1?	ENST00000412916		1	aTg/aAg						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56161191	56161209	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTGTATTCATCTGCTAT	TTCTGTATTCATCTGCTAT	-			P-0006497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	284	515	0	ENST00000399503.3:c.1062_1080del	p.Phe354LeufsTer2	p.F354Lfs*2	ENST00000399503	NM_005921.1	354	TTCTGTATTCATCTGCTATtt/tt						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16052760	16052770	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCACCCTTTG	CTCACCCTTTG	-			P-0006497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	261	538	0	ENST00000268712.3:c.904_909+5del		p.X302_splice	ENST00000268712	NM_006311.3	302							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574014	7574025	+	inframe_deletion	In_Frame_Del	DEL	AAGCGCTCACGC	AAGCGCTCACGC	-			P-0006497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	412	776	0	ENST00000269305.4:c.1002_1013del	p.Arg335_Phe338del	p.R335_F338del	ENST00000269305	NM_001126112.2	334	ggGCGTGAGCGCTTc/ggc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0009505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	804	608	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108198396	108198396	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	174	460	0	ENST00000278616.4:c.7000T>G	p.Tyr2334Asp	p.Y2334D	ENST00000278616	NM_000051.3	2334	Tac/Gac						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1219344	1219344	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	462	619	0	ENST00000326873.7:c.396del	p.Cys132TrpfsTer29	p.C132Wfs*29	ENST00000326873	NM_000455.4	132	tgC/tg						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88476318	88476318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	317	494	0	ENST00000360948.2:c.1814G>T	p.Gly605Val	p.G605V	ENST00000360948	NM_001012338.2	605	gGa/gTa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	336	415	0	ENST00000269305.4:c.497C>G	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tGa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27092812	27092812	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	341	511	0	ENST00000324856.7:c.2833G>T	p.Gly945Ter	p.G945*	ENST00000324856	NM_006015.4	945	Gga/Tga						NEWRECORD																																																																									
FUBP1	8880	MSKCC	GRCh37	1	78430334	78430334	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	142	367	0	ENST00000370768.2:c.834A>G	p.Ile278Met	p.I278M	ENST00000370768	NM_003902.3	278	atA/atG						NEWRECORD																																																																									
RFWD2	64326	MSKCC	GRCh37	1	176012883	176012883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1174	229	555	0	ENST00000367669.3:c.1493G>T	p.Trp498Leu	p.W498L	ENST00000367669	NM_022457.5	498	tGg/tTg						NEWRECORD																																																																									
IRS1	3667	MSKCC	GRCh37	2	227662389	227662389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	229	403	0	ENST00000305123.5:c.1066G>C	p.Ala356Pro	p.A356P	ENST00000305123	NM_005544.2	356	Gcc/Ccc						NEWRECORD																																																																									
GSK3B	2932	MSKCC	GRCh37	3	119721078	119721078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	252	363	0	ENST00000316626.5:c.97G>A	p.Asp33Asn	p.D33N	ENST00000316626		33	Gac/Aac						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187549835	187549835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	318	396	1	ENST00000441802.2:c.4406C>T	p.Thr1469Ile	p.T1469I	ENST00000441802	NM_005245.3	1469	aCa/aTa						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41729984	41729984	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1190	433	768	2	ENST00000242208.4:c.545C>A	p.Pro182Gln	p.P182Q	ENST00000242208	NM_002192.2	182	cCg/cAg						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46246213	46246213	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	347	525	0	ENST00000334344.6:c.4307A>C	p.Asn1436Thr	p.N1436T	ENST00000334344	NM_152641.2	1436	aAt/aCt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49438726	49438726	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	324	515	0	ENST00000301067.7:c.4764A>T	p.Glu1588Asp	p.E1588D	ENST00000301067	NM_003482.3	1588	gaA/gaT						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57857547	57857547	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	362	537	1	ENST00000228682.2:c.73C>T	p.Gln25Ter	p.Q25*	ENST00000228682	NM_005269.2	25	Cag/Tag						NEWRECORD																																																																									
RAD51	5888	MSKCC	GRCh37	15	41011093	41011093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	387	562	0	ENST00000267868.3:c.526G>A	p.Glu176Lys	p.E176K	ENST00000267868	NM_002875.4	176	Gag/Aag						NEWRECORD																																																																									
CEBPA	1050	MSKCC	GRCh37	19	33792773	33792773	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	60	92	0	ENST00000498907.2:c.548C>A	p.Pro183Gln	p.P183Q	ENST00000498907	NM_004364.3	183	cCg/cAg						NEWRECORD																																																																									
PIK3CB	5291	MSKCC	GRCh37	3	138374361	138374362	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	93	283	0	ENST00000289153.2:c.3082_3083del	p.Leu1028CysfsTer6	p.L1028Cfs*6	ENST00000289153	NM_006219.2	1028	CTt/t						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11181302	11181302	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	137	446	0	ENST00000361445.4:c.6933+1del		p.X2311_splice	ENST00000361445	NM_004958.3	2311							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0005528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	404	500	2	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21565435	21565435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1581	123	551	2	ENST00000382592.4:c.451C>T	p.Arg151Trp	p.R151W	ENST00000382592	NM_014572.2	151	Cgg/Tgg						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150004625	150004625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	203	611	1	ENST00000253339.5:c.1600G>A	p.Glu534Lys	p.E534K	ENST00000253339		534	Gag/Aag						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49039419	49039419	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1044	58	571	0	ENST00000267163.4:c.2404G>C	p.Gly802Arg	p.G802R	ENST00000267163	NM_000321.2	802	Ggg/Cgg						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41245882	41245882	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	123	544	0	ENST00000357654.3:c.1666A>C	p.Lys556Gln	p.K556Q	ENST00000357654	NM_007294.3	556	Aaa/Caa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0005528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	180	331	0	ENST00000257430.4:c.4059_4060del	p.Glu1353AspfsTer21	p.E1353Dfs*21	ENST00000257430	NM_000038.5	1353	gaATtt/gatt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0006995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	400	478	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242483	55242506	+	inframe_deletion	In_Frame_Del	DEL	ATCTCCGAAAGCCAACAAGGAAAT	ATCTCCGAAAGCCAACAAGGAAAT	-			P-0006995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	1479	386	1	ENST00000275493.2:c.2253_2276del	p.Ser752_Ile759del	p.S752_I759del	ENST00000275493	NM_005228.3	751	acATCTCCGAAAGCCAACAAGGAAATc/acc						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101900250	101900250	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	31	409	0	ENST00000374994.4:c.684A>T	p.Glu228Asp	p.E228D	ENST00000374994	NM_004612.2	228	gaA/gaT						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0006995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	261	472	0	ENST00000329236.7:c.1459+1G>T		p.X487_splice	ENST00000329236	NM_001204466.1	487							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0005634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	300	552	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0005634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	154	277	1	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0005634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	170	381	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173947	112173947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	96	350	0	ENST00000257430.4:c.2656C>T	p.Gln886Ter	p.Q886*	ENST00000257430	NM_000038.5	886	Cag/Tag						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153245411	153245411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	245	376	0	ENST00000281708.4:c.1780C>T	p.Leu594Phe	p.L594F	ENST00000281708	NM_033632.3	594	Ctt/Ttt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112176245	112176245	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	157	487	0	ENST00000257430.4:c.4954T>C	p.Ser1652Pro	p.S1652P	ENST00000257430	NM_000038.5	1652	Tcc/Ccc						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176562462	176562462	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	146	408	0	ENST00000439151.2:c.358G>C	p.Gly120Arg	p.G120R	ENST00000439151	NM_022455.4	120	Ggt/Cgt						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2968293	2968293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	204	473	1	ENST00000396946.4:c.1693G>A	p.Ala565Thr	p.A565T	ENST00000396946	NM_032415.4	565	Gcc/Acc						NEWRECORD																																																																									
CBL	867	MSKCC	GRCh37	11	119103261	119103261	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	239	546	0	ENST00000264033.4:c.299C>G	p.Ser100Ter	p.S100*	ENST00000264033	NM_005188.3	100	tCa/tGa						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0004974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	107	618	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68849663	68849663	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0004974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	155	372	0	ENST00000261769.5:c.1565+1G>A		p.X522_splice	ENST00000261769	NM_004360.3	522							NEWRECORD																																																																									
KMT2D	8085	MSKCC	GRCh37	12	49434352	49434352	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748969699		P-0004974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	191	480	0	ENST00000301067.7:c.7201C>T	p.Arg2401Cys	p.R2401C	ENST00000301067	NM_003482.3	2401	Cgc/Tgc						NEWRECORD																																																																									
FOXP1	27086	MSKCC	GRCh37	3	71021828	71021828	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	109	263	0	ENST00000318789.4:c.1531-1G>A		p.X511_splice	ENST00000318789	NM_032682.5	511							NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115118895	115118895	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	111	313	0	ENST00000257566.3:c.446A>G	p.Tyr149Cys	p.Y149C	ENST00000257566	NM_016569.3	149	tAc/tGc						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	113	646	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0008083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	211	560	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt						NEWRECORD																																																																									
CDKN2B	1030	MSKCC	GRCh37	9	22006194	22006194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	22	457	0	ENST00000276925.6:c.209C>T	p.Ala70Val	p.A70V	ENST00000276925	NM_004936.3	70	gCg/gTg						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41275068	41275068	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	34	601	0	ENST00000349496.5:c.1234G>C	p.Asp412His	p.D412H	ENST00000349496	NM_001904.3	412	Gat/Cat						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164585	112164585	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			42	36	427	0	ENST00000257430.4:c.1659G>A	p.Trp553Ter	p.W553*	ENST00000257430	NM_000038.5	553	tgG/tgA						NEWRECORD																																																																									
HIST1H3C	8352	MSKCC	GRCh37	6	26045946	26045946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	164	1309	3	ENST00000540144.1:c.308G>T	p.Gly103Val	p.G103V	ENST00000540144	NM_003531.2	103	gGa/gTa						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2952986	2952986	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	378	474	0	ENST00000396946.4:c.2954C>G	p.Ala985Gly	p.A985G	ENST00000396946	NM_032415.4	985	gCc/gGc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249029	55249029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	38	525	1	ENST00000275493.2:c.2327G>A	p.Arg776His	p.R776H	ENST00000275493	NM_005228.3	776	cGc/cAc						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140501331	140501331	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	36	367	0	ENST00000288602.6:c.741T>A	p.Phe247Leu	p.F247L	ENST00000288602	NM_004333.4	247	ttT/ttA						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114920396	114920396	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	228	811	0	ENST00000543371.1:c.1337A>C	p.Lys446Thr	p.K446T	ENST00000543371	NM_001198531.1	446	aAg/aCg						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42052630	42052630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	175	1106	2	ENST00000219905.7:c.7301G>A	p.Arg2434Gln	p.R2434Q	ENST00000219905	NM_001164273.1	2434	cGg/cAg						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23646234	23646234	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	233	822	1	ENST00000261584.4:c.1633G>T	p.Glu545Ter	p.E545*	ENST00000261584	NM_024675.3	545	Gaa/Taa						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48581186	48581204	+	frameshift_variant	Frame_Shift_Del	DEL	CATGACTTTGAGGGACAGC	CATGACTTTGAGGGACAGC	-			P-0008083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	102	426	0	ENST00000342988.3:c.493_511del	p.Asp165ArgfsTer31	p.D165Rfs*31	ENST00000342988	NM_005359.5	164	CATGACTTTGAGGGACAGCca/ca						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72827998	72828017	+	frameshift_variant	Frame_Shift_Del	DEL	TATTCCCGTTGCACTGTCGT	TATTCCCGTTGCACTGTCGT	-			P-0008083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	114	1272	1	ENST00000268489.5:c.8564_8583del	p.Asn2855SerfsTer3	p.N2855Sfs*3	ENST00000268489	NM_006885.3	2855	aACGACAGTGCAACGGGAATA/a						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0009608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	96	482	2	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0009608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	43	522	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508614	106508614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	27	310	0	ENST00000359195.3:c.608C>T	p.Thr203Met	p.T203M	ENST00000359195	NM_002649.2	203	aCg/aTg						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2135023	2135023	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs144062721		P-0009608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	58	607	0	ENST00000219476.3:c.4565A>G	p.Asn1522Ser	p.N1522S	ENST00000219476	NM_000548.3	1522	aAt/aGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0003913-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			234	250	487	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29664385	29664385	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003913-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	237	375	0	ENST00000358273.4:c.6428-1G>A		p.X2143_splice	ENST00000358273	NM_001042492.2	2143							NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11259419	11259421	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0003913-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			457	274	422	0	ENST00000361445.4:c.4147_4149del	p.Leu1383del	p.L1383del	ENST00000361445	NM_004958.3	1383	CTG/-						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55370879	55370879	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009543-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	151	213	0	ENST00000297316.4:c.181C>T	p.Arg61Ter	p.R61*	ENST00000297316	NM_022454.3	61	Cga/Tga						NEWRECORD																																																																									
IGF2	3481	MSKCC	GRCh37	11	2154288	2154288	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009543-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	600	462	0	ENST00000434045.2:c.640del	p.Leu214Ter	p.L214*	ENST00000434045	NM_001127598.1	214	Ctg/tg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0005895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	1962	391	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226595555	226595555	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	233	395	0	ENST00000366794.5:c.76G>T	p.Glu26Ter	p.E26*	ENST00000366794	NM_001618.3	26	Gag/Tag						NEWRECORD																																																																									
ETV6	2120	MSKCC	GRCh37	12	12022423	12022423	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	374	632	0	ENST00000396373.4:c.529G>C	p.Glu177Gln	p.E177Q	ENST00000396373	NM_001987.4	177	Gaa/Caa						NEWRECORD																																																																									
RPTOR	57521	MSKCC	GRCh37	17	78858943	78858943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	91	365	0	ENST00000306801.3:c.1978C>T	p.Arg660Trp	p.R660W	ENST00000306801	NM_020761.2	660	Cgg/Tgg						NEWRECORD																																																																									
CRLF2	64109	MSKCC	GRCh37	X	1327782	1327782	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	209	348	0	ENST00000381566.1:c.99G>C	p.Gln33His	p.Q33H	ENST00000381566		33	caG/caC						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576920	7576936	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCAGTGCTAGGAAAGA	GGCAGTGCTAGGAAAGA	-			P-0005895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	359	296	0	ENST00000269305.4:c.920-10_926del		p.X307_splice	ENST00000269305	NM_001126112.2	307							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577027	7577027	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	247	351	0	ENST00000269305.4:c.911delC	p.Thr304IlefsTer41	p.T304Ifs*41	ENST00000269305	NM_001126112.2	304	aCt/at						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007304-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	74	312	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44921908	44921908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	202	398	0	ENST00000377967.4:c.1442G>A	p.Arg481His	p.R481H	ENST00000377967	NM_021140.2	481	cGc/cAc						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16255142	16255145	+	frameshift_variant	Frame_Shift_Del	DEL	GAGA	GAGA	-			P-0006963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	284	410	0	ENST00000375759.3:c.2415_2418del	p.Glu805AspfsTer3	p.E805Dfs*3	ENST00000375759	NM_015001.2	803	GAGAga/ga						NEWRECORD																																																																									
ERRFI1	54206	MSKCC	GRCh37	1	8075394	8075394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1103	367	549	0	ENST00000377482.5:c.176C>T	p.Ser59Phe	p.S59F	ENST00000377482	NM_018948.3	59	tCt/tTt						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118365075	118365075	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0006963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	249	401	0	ENST00000534358.1:c.5251A>T	p.Lys1751Ter	p.K1751*	ENST00000534358	NM_005933.3	1751	Aaa/Taa						NEWRECORD																																																																									
GATA1	2623	MSKCC	GRCh37	X	48650391	48650391	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200509606		P-0006963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	264	533	1	ENST00000376670.3:c.361G>A	p.Val121Met	p.V121M	ENST00000376670	NM_002049.3	121	Gtg/Atg						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16264106	16264113	+	frameshift_variant	Frame_Shift_Del	DEL	CCCAGAGA	CCCAGAGA	-			P-0006963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	230	416	0	ENST00000375759.3:c.10478_10485del	p.Gln3493ArgfsTer23	p.Q3493Rfs*23	ENST00000375759	NM_015001.2	3492	tCCCAGAGA/t						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098809	178098811	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0006963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	328	434	0	ENST00000397062.3:c.234_236del	p.Glu79del	p.E79del	ENST00000397062	NM_006164.4	78	gaAGAg/gag						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0005265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	14	485	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0006815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	134	428	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52584590	52584590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	133	398	0	ENST00000394830.3:c.4423G>A	p.Gly1475Arg	p.G1475R	ENST00000394830	NM_018313.4	1475	Gga/Aga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	69	150	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	94120298	94120298	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	66	258	0	ENST00000369303.4:c.753T>A	p.Ser251Arg	p.S251R	ENST00000369303	NM_004440.3	251	agT/agA						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49425494	49425494	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	49	322	0	ENST00000301067.7:c.12994A>G	p.Thr4332Ala	p.T4332A	ENST00000301067	NM_003482.3	4332	Act/Gct						NEWRECORD																																																																									
MAX	4149	MSKCC	GRCh37	14	65543382	65543382	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0006294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	75	212	0	ENST00000358664.4:c.296-1G>T		p.X99_splice	ENST00000358664	NM_002382.4	99							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0008172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	261	310	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1082	214	262	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	169	331	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	19	293	2	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0008906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	372	445	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30681726	30681726	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	166	366	0	ENST00000376406.3:c.371C>A	p.Ala124Asp	p.A124D	ENST00000376406	NM_014641.2	124	gCt/gAt						NEWRECORD																																																																									
FGFR1	2260	MSKCC	GRCh37	8	38271160	38271160	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	88	152	0	ENST00000425967.3:c.2548C>A	p.Leu850Ile	p.L850I	ENST00000425967	NM_001174067.1	850	Ctc/Atc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0008744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1080	1234	620	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
YAP1	10413	MSKCC	GRCh37	11	102094475	102094475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	116	490	0	ENST00000282441.5:c.1155C>A	p.Phe385Leu	p.F385L	ENST00000282441	NM_001130145.2	385	ttC/ttA						NEWRECORD																																																																									
MAPK3	5595	MSKCC	GRCh37	16	30133211	30133211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1361	209	909	3	ENST00000263025.4:c.287G>A	p.Arg96His	p.R96H	ENST00000263025	NM_002746.2	96	cGc/cAc						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2199926	2199926	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	142	733	0	ENST00000398665.3:c.695T>A	p.Ile232Asn	p.I232N	ENST00000398665	NM_032482.2	232	aTc/aAc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0008514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	8773	525	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G	rs587782272		P-0008514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	433	514	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332							NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259521	55259521	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	8822	534	1	ENST00000275493.2:c.2579A>T	p.Lys860Ile	p.K860I	ENST00000275493	NM_005228.3	860	aAa/aTa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578284	7578284	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	186	467	0	ENST00000269305.4:c.565del	p.Ala189ProfsTer58	p.A189Pfs*58	ENST00000269305	NM_001126112.2	189	Gcc/cc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	263	433	0	ENST00000269305.4:c.764T>G	p.Ile255Ser	p.I255S	ENST00000269305	NM_001126112.2	255	aTc/aGc						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	19	120	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	161	251	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0007060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	223	368	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa						NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14024573	14024573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	77	238	0	ENST00000311895.7:c.799C>T	p.Arg267Cys	p.R267C	ENST00000311895	NM_005236.2	267	Cgc/Tgc						NEWRECORD																																																																									
VTCN1	79679	MSKCC	GRCh37	1	117699513	117699513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	54	216	2	ENST00000369458.3:c.128C>T	p.Ala43Val	p.A43V	ENST00000369458	NM_024626.3	43	gCc/gTc						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41274897	41274897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	122	282	0	ENST00000349496.5:c.1147T>C	p.Trp383Arg	p.W383R	ENST00000349496	NM_001904.3	383	Tgg/Cgg						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44936072	44936072	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0007060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	201	220	0	ENST00000377967.4:c.2832+1G>T		p.X944_splice	ENST00000377967	NM_021140.2	944							NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47044603	47044610	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGTGTT	GGTGTGTT	-			P-0007060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	162	197	0	ENST00000329236.7:c.1866+2_1866+9del		p.X622_splice	ENST00000329236	NM_001204466.1	622							NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	321	229	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99172064	99172064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	277	258	0	ENST00000074304.5:c.1630C>T	p.Arg544Cys	p.R544C	ENST00000074304	NM_001134224.1	544	Cgt/Tgt						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66231689	66231689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	247	333	1	ENST00000273854.3:c.2011G>A	p.Glu671Lys	p.E671K	ENST00000273854	NM_004439.5	671	Gaa/Aaa						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135797247	135797284	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	TGTAATGAGAACGCAAAAAGGAGACGAAGTTGCAAGGG	TGTAATGAGAACGCAAAAAGGAGACGAAGTTGCAAGGG	-			P-0005495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	76	317	0	ENST00000298552.3:c.585_622del	p.Tyr195Ter	p.Y195*	ENST00000298552	NM_001162426.1	195	taCCCTTGCAACTTCGTCTCCTTTTTGCGTTCTCATTACAgt/tagt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0007381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	551	437	1	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187516851	187516851	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	45	284	0	ENST00000441802.2:c.13130A>T	p.Asp4377Val	p.D4377V	ENST00000441802	NM_005245.3	4377	gAt/gTt						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187628224	187628224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	58	361	0	ENST00000441802.2:c.2758G>A	p.Val920Ile	p.V920I	ENST00000441802	NM_005245.3	920	Gtt/Att						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38963132	38963132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	51	336	0	ENST00000357387.3:c.1412C>T	p.Ala471Val	p.A471V	ENST00000357387	NM_152756.3	471	gCa/gTa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55227868	55227868	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			4535	5010	385	0	ENST00000275493.2:c.1335A>G	p.Ile445Met	p.I445M	ENST00000275493	NM_005228.3	445	atA/atG						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	348215	348215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	45	266	0	ENST00000262320.3:c.1291C>T	p.Pro431Ser	p.P431S	ENST00000262320	NM_003502.3	431	Ccc/Tcc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	31	293	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	19	202	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0009305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	26	155	1	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0009305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	37	231	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga						NEWRECORD																																																																									
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	19	279	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0009305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	72	370	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40730831	40730831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	44	311	0	ENST00000373198.4:c.3704G>A	p.Arg1235His	p.R1235H	ENST00000373198	NM_133170.3	1235	cGc/cAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0007586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	251	419	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	59	245	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0007586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	114	252	1	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89521721	89521721	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372594677		P-0007586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	132	333	2	ENST00000336596.2:c.2798C>T	p.Thr933Met	p.T933M	ENST00000336596	NM_005233.5	933	aCg/aTg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	142	341	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	134	492	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133760421	133760421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	145	363	1	ENST00000318560.5:c.2744C>T	p.Ser915Leu	p.S915L	ENST00000318560	NM_005157.4	915	tCg/tTg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0008377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	244	395	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916929	178916937	+	inframe_deletion	In_Frame_Del	DEL	GGCAACCGT	GGCAACCGT	-			P-0008377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	192	789	0	ENST00000263967.3:c.317_325delGCAACCGTG	p.Gly106_Arg108del	p.G106_R108del	ENST00000263967	NM_006218.2	106	GGCAACCGT/-						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175720	112175720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	140	372	0	ENST00000257430.4:c.4429C>T	p.Gln1477Ter	p.Q1477*	ENST00000257430	NM_000038.5	1477	Cag/Tag						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99467824	99467824	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142608976		P-0008377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	144	494	0	ENST00000268035.6:c.2693C>T	p.Pro898Leu	p.P898L	ENST00000268035	NM_000875.3	898	cCg/cTg						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81922869	81922869	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	287	775	0	ENST00000359376.3:c.858T>G	p.Phe286Leu	p.F286L	ENST00000359376	NM_002661.3	286	ttT/ttG						NEWRECORD																																																																									
ALOX12B	242	MSKCC	GRCh37	17	7983583	7983583	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	33	417	0	ENST00000319144.4:c.724A>T	p.Ile242Phe	p.I242F	ENST00000319144	NM_001139.2	242	Att/Ttt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173571	112173571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	143	359	0	ENST00000257430.4:c.2280del	p.Glu761LysfsTer4	p.E761Kfs*4	ENST00000257430	NM_000038.5	760	ctA/ct						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86670129	86670130	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0008377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	92	328	0	ENST00000274376.6:c.1927_1928del	p.Val643LeufsTer2	p.V643Lfs*2	ENST00000274376	NM_002890.2	642	ttTGtc/tttc						NEWRECORD																																																																									
CASP8	841	MSKCC	GRCh37	2	202151262	202151265	+	frameshift_variant	Frame_Shift_Del	DEL	AGAT	AGAT	-			P-0008377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1138	146	713	0	ENST00000358485.4:c.1562_1565del	p.Gln521ArgfsTer8	p.Q521Rfs*8	ENST00000358485	NM_001080125.1	521	cAGATg/cg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0006636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	112	327	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0006636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	83	379	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs794727798		P-0006636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	148	412	1	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134825358	134825358	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	159	435	0	ENST00000398015.3:c.874C>G	p.Arg292Gly	p.R292G	ENST00000398015	NM_004441.4	292	Cgc/Ggc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0006759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	356	403	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0006759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	116	308	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga						NEWRECORD																																																																									
MST1R	4486	MSKCC	GRCh37	3	49934988	49934988	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1522	106	757	0	ENST00000296474.3:c.2011G>C	p.Asp671His	p.D671H	ENST00000296474	NM_002447.2	671	Gac/Cac						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112090687	112090687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	58	362	0	ENST00000257430.4:c.100C>T	p.Leu34Phe	p.L34F	ENST00000257430	NM_000038.5	34	Ctt/Ttt						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87322806	87322806	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144037140		P-0006759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	113	347	2	ENST00000277120.3:c.407G>A	p.Arg136His	p.R136H	ENST00000277120		136	cGt/cAt						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21549395	21549395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143631255		P-0006759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	117	229	0	ENST00000382592.4:c.2881C>T	p.Arg961Trp	p.R961W	ENST00000382592	NM_014572.2	961	Cgg/Tgg						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28592632	28592632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	118	551	0	ENST00000241453.7:c.2513G>A	p.Ser838Asn	p.S838N	ENST00000241453	NM_004119.2	838	aGt/aAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	31	509	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	88	522	0	ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	157	318	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152129385	152129385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	91	322	0	ENST00000206249.3:c.338C>T	p.Pro113Leu	p.P113L	ENST00000206249	NM_000125.3	113	cCg/cTg						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55953894	55953894	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	90	343	0	ENST00000263923.4:c.3542C>A	p.Ser1181Ter	p.S1181*	ENST00000263923	NM_002253.2	1181	tCa/tAa						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41566520	41566520	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1164	145	557	0	ENST00000263253.7:c.4397G>A	p.Trp1466Ter	p.W1466*	ENST00000263253	NM_001429.3	1466	tGg/tAg						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266029	41266287	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGC	AGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGC	-			P-0006890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	45	390	0	ENST00000349496.5:c.30_241+47del		p.X10_splice	ENST00000349496	NM_001904.3	10							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0005131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	189	253	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	217	492	0	ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25469592	25469592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	66	482	0	ENST00000264709.3:c.1176G>T	p.Glu392Asp	p.E392D	ENST00000264709	NM_175629.2	392	gaG/gaT						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134968200	134968200	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143309901		P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	57	455	2	ENST00000398015.3:c.2713C>T	p.Arg905Cys	p.R905C	ENST00000398015	NM_004441.4	905	Cgc/Tgc						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67575430	67575430	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	47	319	0	ENST00000274335.5:c.503A>G	p.Asp168Gly	p.D168G	ENST00000274335		168	gAt/gGt						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149497286	149497286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	23	435	0	ENST00000261799.4:c.3032C>A	p.Ala1011Asp	p.A1011D	ENST00000261799	NM_002609.3	1011	gCc/gAc						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149500798	149500798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	34	474	1	ENST00000261799.4:c.2432C>A	p.Ala811Asp	p.A811D	ENST00000261799	NM_002609.3	811	gCc/gAc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	100	401	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46245495	46245495	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	31	247	1	ENST00000334344.6:c.3589G>T	p.Ala1197Ser	p.A1197S	ENST00000334344	NM_152641.2	1197	Gct/Tct						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72993483	72993483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	36	647	0	ENST00000268489.5:c.562G>T	p.Ala188Ser	p.A188S	ENST00000268489	NM_006885.3	188	Gca/Tca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577563	7577563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	51	387	0	ENST00000269305.4:c.718A>G	p.Ser240Gly	p.S240G	ENST00000269305	NM_001126112.2	240	Agt/Ggt						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29533361	29533361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	28	311	0	ENST00000358273.4:c.1364G>T	p.Gly455Val	p.G455V	ENST00000358273	NM_001042492.2	455	gGa/gTa						NEWRECORD																																																																									
YES1	7525	MSKCC	GRCh37	18	756815	756815	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	35	406	2	ENST00000314574.4:c.13A>G	p.Lys5Glu	p.K5E	ENST00000314574	NM_005433.3	5	Aaa/Gaa						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5220326	5220326	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	18	422	0	ENST00000357368.4:c.3494G>T	p.Arg1165Leu	p.R1165L	ENST00000357368	NM_002850.3	1165	cGt/cTt						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187518136	187518145	+	frameshift_variant	Frame_Shift_Del	DEL	AACGATTCCA	AACGATTCCA	-			P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	43	499	0	ENST00000441802.2:c.12549_12558del	p.Ile4183MetfsTer20	p.I4183Mfs*20	ENST00000441802	NM_005245.3	4183	atTGGAATCGTT/at						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	67	377	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0005788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	154	582	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212537965	212537965	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	53	397	1	ENST00000342788.4:c.1640A>C	p.Glu547Ala	p.E547A	ENST00000342788	NM_005235.2	547	gAg/gCg						NEWRECORD																																																																									
RPTOR	57521	MSKCC	GRCh37	17	78865638	78865638	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0005788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	43	340	0	ENST00000306801.3:c.2101+1G>T		p.X701_splice	ENST00000306801	NM_020761.2	701							NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39932171	39932171	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	112	375	0	ENST00000378444.4:c.2428C>T	p.Arg810Ter	p.R810*	ENST00000378444	NM_001123385.1	810	Cga/Tga						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70120523	70120533	+	coding_sequence_variant,3_prime_UTR_variant	Frame_Shift_Del	DEL	CCTTGAGGAGG	CCTTGAGGAGG	-			P-0005788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	356	95	0	ENST00000245479.2:c.1528_*8delTGAGGAGGCCT		p.*510fs*	ENST00000245479	NM_000346.3	509							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0006138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	193	509	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0006138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	86	540	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga						NEWRECORD																																																																									
FGFR1	2260	MSKCC	GRCh37	8	38275492	38275492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	110	370	0	ENST00000425967.3:c.1541C>T	p.Pro514Leu	p.P514L	ENST00000425967	NM_001174067.1	514	cCc/cTc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8465638	8465638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	74	436	0	ENST00000356435.5:c.3542G>T	p.Arg1181Leu	p.R1181L	ENST00000356435		1181	cGt/cTt						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0005050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	280	520	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38060816	38060816	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	578	734	0	ENST00000250448.2:c.1173C>A	p.Asp391Glu	p.D391E	ENST00000250448	NM_004496.3	391	gaC/gaA						NEWRECORD																																																																									
CHEK2	11200	MSKCC	GRCh37	22	29107980	29107980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	275	583	0	ENST00000328354.6:c.709G>A	p.Ala237Thr	p.A237T	ENST00000328354	NM_007194.3	237	Gct/Act						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	16	435	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0009758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	22	454	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	150	299	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0009641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	133	354	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA						NEWRECORD																																																																									
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0009641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	272	562	1	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057520007		P-0009641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	459	506	1	ENST00000269305.4:c.614A>T	p.Tyr205Phe	p.Y205F	ENST00000269305	NM_001126112.2	205	tAt/tTt						NEWRECORD																																																																									
CDKN1B	1027	MSKCC	GRCh37	12	12871776	12871776	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	219	201	0	ENST00000228872.4:c.493A>T	p.Lys165Ter	p.K165*	ENST00000228872	NM_004064.3	165	Aaa/Taa						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133241952	133241952	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	160	423	0	ENST00000320574.5:c.2404G>C	p.Asp802His	p.D802H	ENST00000320574	NM_006231.2	802	Gac/Cac						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133244953	133244953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	225	559	0	ENST00000320574.5:c.2162G>C	p.Arg721Thr	p.R721T	ENST00000320574	NM_006231.2	721	aGa/aCa						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2114332	2114332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	1128	559	0	ENST00000219476.3:c.1503C>A	p.Asp501Glu	p.D501E	ENST00000219476	NM_000548.3	501	gaC/gaA						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	54	549	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	44	730	1	ENST00000269305.4:c.833C>A	p.Pro278His	p.P278H	ENST00000269305	NM_001126112.2	278	cCt/cAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175755	112175755	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	172	235	0	ENST00000257430.4:c.4464del	p.Leu1488PhefsTer19	p.L1488Ffs*19	ENST00000257430	NM_000038.5	1488	ttA/tt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578206	7578207	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0008288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	822	470	0	ENST00000269305.4:c.642_643del	p.His214GlnfsTer7	p.H214Qfs*7	ENST00000269305	NM_001126112.2	214	caTAgt/cagt						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131945032	131945035	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0008288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	146	312	0	ENST00000265335.6:c.2983_2986del	p.Glu995ArgfsTer2	p.E995Rfs*2	ENST00000265335		994	AAAGaa/aa						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	116	120	0				ENST00000310581	NM_198253.2								NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0009268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	64	367	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0009268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1272	134	425	1	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916836	178916836	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1829	166	679	0	ENST00000263967.3:c.223C>G	p.Gln75Glu	p.Q75E	ENST00000263967	NM_006218.2	75	Caa/Gaa						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48934194	48934194	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	159	355	1	ENST00000267163.4:c.649C>T	p.Gln217Ter	p.Q217*	ENST00000267163	NM_000321.2	217	Cag/Tag						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120478182	120478182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	127	324	0	ENST00000256646.2:c.3568G>A	p.Glu1190Lys	p.E1190K	ENST00000256646	NM_024408.3	1190	Gag/Aag						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42059348	42059348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1885	186	653	1	ENST00000219905.7:c.9068C>T	p.Ser3023Leu	p.S3023L	ENST00000219905	NM_001164273.1	3023	tCa/tTa						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610349	10610349	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1128	137	378	0	ENST00000171111.5:c.361G>T	p.Glu121Ter	p.E121*	ENST00000171111	NM_203500.1	121	Gag/Tag						NEWRECORD																																																																									
SRC	6714	MSKCC	GRCh37	20	36026164	36026164	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1435	150	436	0	ENST00000358208.4:c.766C>G	p.Gln256Glu	p.Q256E	ENST00000358208		256	Cag/Gag						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66765461	66765461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1261	102	369	0	ENST00000374690.3:c.473C>T	p.Ser158Leu	p.S158L	ENST00000374690	NM_000044.3	158	tCa/tTa						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47041683	47041683	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1563	152	539	0	ENST00000329236.7:c.1674del	p.Glu560ArgfsTer66	p.E560Rfs*66	ENST00000329236	NM_001204466.1	558	ggC/gg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0009062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	456	493	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	153	354	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604787	48604787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	184	347	0	ENST00000342988.3:c.1609G>T	p.Asp537Tyr	p.D537Y	ENST00000342988	NM_005359.5	537	Gac/Tac						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0009062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	107	193	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0007509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	670	294	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0007509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	207	333	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135778016	135778016	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	195	316	0	ENST00000298552.3:c.2367C>G	p.Phe789Leu	p.F789L	ENST00000298552	NM_001162426.1	789	ttC/ttG						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0004693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	177	536	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0004693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	61	295	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220644	1220644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	130	524	0	ENST00000326873.7:c.662C>T	p.Pro221Leu	p.P221L	ENST00000326873	NM_000455.4	221	cCg/cTg						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162746077	162746077	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	111	415	1	ENST00000367921.3:c.2200A>G	p.Asn734Asp	p.N734D	ENST00000367921	NM_006182.2	734	Aac/Gac						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89390976	89390976	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	80	521	0	ENST00000336596.2:c.1042C>A	p.Pro348Thr	p.P348T	ENST00000336596	NM_005233.5	348	Ccc/Acc						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106524675	106524675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	46	349	1	ENST00000359195.3:c.2836G>A	p.Asp946Asn	p.D946N	ENST00000359195	NM_002649.2	946	Gac/Aac						NEWRECORD																																																																									
RPS6KA4	8986	MSKCC	GRCh37	11	64137241	64137241	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	60	463	1	ENST00000334205.4:c.1673G>T	p.Arg558Leu	p.R558L	ENST00000334205	NM_003942.2	558	cGg/cTg						NEWRECORD																																																																									
PAK1	5058	MSKCC	GRCh37	11	77103393	77103393	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1184	117	543	0	ENST00000356341.3:c.173T>C	p.Ile58Thr	p.I58T	ENST00000356341	NM_002576.4	58	aTt/aCt						NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103524687	103524687	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	57	487	0	ENST00000355739.4:c.2818G>T	p.Val940Leu	p.V940L	ENST00000355739	NM_000123.3	940	Gtg/Ttg						NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100615730	100615730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	55	467	1	ENST00000308731.7:c.602C>T	p.Pro201Leu	p.P201L	ENST00000308731	NM_000061.2	201	cCa/cTa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003738-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			733	45	260	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30715708	30715708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003738-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			655	38	281	0	ENST00000359013.4:c.1441G>A	p.Glu481Lys	p.E481K	ENST00000359013	NM_001024847.2	481	Gaa/Aaa						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42042451	42042451	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003738-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1429	125	676	0	ENST00000219905.7:c.6646C>T	p.Gln2216Ter	p.Q2216*	ENST00000219905	NM_001164273.1	2216	Cag/Tag						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56435734	56435734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003738-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			394	40	173	0	ENST00000407977.2:c.1403C>T	p.Ser468Leu	p.S468L	ENST00000407977		468	tCa/tTa						NEWRECORD																																																																									
NF2	4771	MSKCC	GRCh37	22	30057193	30057193	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003738-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			610	55	302	0	ENST00000338641.4:c.676-1G>A		p.X226_splice	ENST00000338641	NM_000268.3	226							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	39	215	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913324		P-0008922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	23	186	0	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610359	10610359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	34	198	0	ENST00000171111.5:c.351G>T	p.Glu117Asp	p.E117D	ENST00000171111	NM_203500.1	117	gaG/gaT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0004758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	90	365	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56482369	56482369	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	83	383	0	ENST00000267101.3:c.917C>G	p.Pro306Arg	p.P306R	ENST00000267101	NM_001982.3	306	cCt/cGt						NEWRECORD																																																																									
AXL	558	MSKCC	GRCh37	19	41726677	41726677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	74	344	0	ENST00000301178.4:c.222G>C	p.Gln74His	p.Q74H	ENST00000301178	NM_021913.4	74	caG/caC						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29554254	29554475	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAGAGTGATGGCACTGCTGAGGCGCATTGAGCATCCCACTGCAGGAAACACTGAGGTATGCCCTTAGCAACAGAAACACCCCTCCCAGGCGCCCACCCTCAATTTGGAAGCCTCTTGTTACATATGTGTGATCAGGAATAGCTTTTGAAGTAAATCCAAGATACGTGCATATTACAAGTATAATATCTGAGTATTTAATATACATCAAGTTTGAAACTTGG	AAAGAGTGATGGCACTGCTGAGGCGCATTGAGCATCCCACTGCAGGAAACACTGAGGTATGCCCTTAGCAACAGAAACACCCCTCCCAGGCGCCCACCCTCAATTTGGAAGCCTCTTGTTACATATGTGTGATCAGGAATAGCTTTTGAAGTAAATCCAAGATACGTGCATATTACAAGTATAATATCTGAGTATTTAATATACATCAAGTTTGAAACTTGG	-			P-0004758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	79	304	0	ENST00000358273.4:c.2270_2326-66del		p.X757_splice	ENST00000358273	NM_001042492.2	757							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	106	434	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0007338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	188	375	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134670813	134670813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	45	231	0	ENST00000398015.3:c.724G>A	p.Gly242Arg	p.G242R	ENST00000398015	NM_004441.4	242	Ggg/Agg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	206	357	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53243999	53243999	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	286	452	4	ENST00000375401.3:c.994C>T	p.Arg332Ter	p.R332*	ENST00000375401	NM_004187.3	332	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578505	7578505	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	92	352	0	ENST00000269305.4:c.425delC	p.Pro142LeufsTer28	p.P142Lfs*28	ENST00000269305	NM_001126112.2	142	cCt/ct						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187584505	187584505	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0005107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	85	358	0	ENST00000441802.2:c.3528C>G	p.Tyr1176Ter	p.Y1176*	ENST00000441802	NM_005245.3	1176	taC/taG						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717629	89717629	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	76	317	0	ENST00000371953.3:c.654C>A	p.Cys218Ter	p.C218*	ENST00000371953	NM_000314.4	218	tgC/tgA						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49448453	49448453	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	42	292	0	ENST00000301067.7:c.258G>T	p.Glu86Asp	p.E86D	ENST00000301067	NM_003482.3	86	gaG/gaT						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72992763	72992763	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	64	463	0	ENST00000268489.5:c.1282A>T	p.Thr428Ser	p.T428S	ENST00000268489	NM_006885.3	428	Acc/Tcc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0006635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	26	485	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579352	7579352	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	265	481	0	ENST00000269305.4:c.335del	p.Gly112AlafsTer11	p.G112Afs*11	ENST00000269305	NM_001126112.2	112	gGc/gc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	101	312	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0006580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	96	519	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0006580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	44	187	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110435423	110435423	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	75	333	0	ENST00000375856.3:c.2978C>A	p.Ala993Asp	p.A993D	ENST00000375856	NM_003749.2	993	gCc/gAc						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11188983	11188983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1152	103	1037	1	ENST00000361445.4:c.5740G>T	p.Gly1914Cys	p.G1914C	ENST00000361445	NM_004958.3	1914	Ggt/Tgt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023832	27023832	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	93	622	3	ENST00000324856.7:c.938G>T	p.Gly313Val	p.G313V	ENST00000324856	NM_006015.4	313	gGg/gTg						NEWRECORD																																																																									
PHOX2B	8929	MSKCC	GRCh37	4	41748120	41748120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	23	231	1	ENST00000226382.2:c.649G>A	p.Gly217Arg	p.G217R	ENST00000226382	NM_003924.3	217	Ggg/Agg						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46125058	46125058	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	54	712	0	ENST00000334344.6:c.245G>C	p.Cys82Ser	p.C82S	ENST00000334344	NM_152641.2	82	tGt/tCt						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57861936	57861936	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1363	107	1311	0	ENST00000228682.2:c.1237G>T	p.Glu413Ter	p.E413*	ENST00000228682	NM_005269.2	413	Gag/Tag						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99452055	99452055	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	51	760	0	ENST00000268035.6:c.1389G>T	p.Glu463Asp	p.E463D	ENST00000268035	NM_000875.3	463	gaG/gaT						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68863593	68863593	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	112	873	1	ENST00000261769.5:c.2332G>T	p.Ala778Ser	p.A778S	ENST00000261769	NM_004360.3	778	Gct/Tct						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	92	649	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29556886	29556886	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	56	510	1	ENST00000358273.4:c.2884G>T	p.Glu962Ter	p.E962*	ENST00000358273	NM_001042492.2	962	Gaa/Taa						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47030598	47030598	+	intron_variant	Intron	SNP	G	G	T			P-0007542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	106	783	0	ENST00000329236.7:c.201+1701G>T		p.*67*	ENST00000329236	NM_001204466.1								NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66943642	66943642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1402	207	1258	0	ENST00000374690.3:c.2722C>A	p.Leu908Ile	p.L908I	ENST00000374690	NM_000044.3	908	Ctt/Att						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63851071	63851071	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	45	388	0	ENST00000279873.7:c.1851delC	p.Ala618ProfsTer11	p.A618Pfs*11	ENST00000279873	NM_032199.2	617	Ccc/cc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			60	83	378	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0007909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			52	77	454	5	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112178606	112178606	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1311878041		P-0007909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			74	97	585	1	ENST00000257430.4:c.7315C>T	p.Arg2439Cys	p.R2439C	ENST00000257430	NM_000038.5	2439	Cgc/Tgc						NEWRECORD																																																																									
PMS1	5378	MSKCC	GRCh37	2	190728481	190728481	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	16	303	0	ENST00000441310.2:c.1869G>C	p.Lys623Asn	p.K623N	ENST00000441310	NM_000534.4	623	aaG/aaC						NEWRECORD																																																																									
SOX2	6657	MSKCC	GRCh37	3	181430708	181430708	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	10	366	1	ENST00000325404.1:c.560A>T	p.Asn187Ile	p.N187I	ENST00000325404	NM_003106.3	187	aAt/aTt						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67477157	67477157	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	85	638	0	ENST00000327367.4:c.964C>T	p.Gln322Ter	p.Q322*	ENST00000327367	NM_005902.3	322	Cag/Tag						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11136178	11136178	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	43	568	0	ENST00000344626.4:c.3162C>G	p.His1054Gln	p.H1054Q	ENST00000344626	NM_003072.3	1054	caC/caG						NEWRECORD																																																																									
TNFAIP3	7128	MSKCC	GRCh37	6	138200489	138201187	+	splice_donor_variant,intron_variant	Splice_Site	DEL	GTGAGTGAAGTGGTTGACTTCCTAACACAGCGGCTGCTGTCCAGAAGGGGTTTTGTTCCTGACCTTTAAGAAAAAAAGCCCATGTAGGCAGTCAGGCAGAACTGTCAGGACCTACCGTGCTTTTCTACCAGCTTGTGCAGGGGACAGTCACGGTGGCCCTGCCAGCCGCCCATGGAGGCAAAAGGCACTGCGTGATTACAGCAGCTCCTAATATCACATTCCAAAAACCAGAGTGCCCTGTAGACAGAGCTCATGGGATGTGCTTTTACTAGACCATTCAGGTCTGGCATATCTAAGAGAGTCTAAGTTTAAACTAGACTTATTTTGCAACTTAGATATAACAGAACAATCTTAAAATCTGAAGAGTAGTAACTGGAGAGAAGGAAGTCTCTGTTGACACTGTAAGGAAACAGATGTGGTTTGGAAATCTCTCATTGGAAAGAAGGGTGATCAGGTAATGCCTGCTCCTTGCCTGTTCCTGTGAGCAATCAGTGCTTCAAGTTCAAAATGAGAGATTGGTAAAGCCAAAGATGTTTCCATAATAGGGATGTTATTTCTTTTGCTGAATTTATAGACTTAAACATATACATATATATATTTCTATACATTTAAGGCTGGCCTAATCTGTATTTGGAACCCATTTATTTCTCTACTGTCAGCATCTCTGTATCGGTGGGGTGACCCCTATGTGGTACTAAC	GTGAGTGAAGTGGTTGACTTCCTAACACAGCGGCTGCTGTCCAGAAGGGGTTTTGTTCCTGACCTTTAAGAAAAAAAGCCCATGTAGGCAGTCAGGCAGAACTGTCAGGACCTACCGTGCTTTTCTACCAGCTTGTGCAGGGGACAGTCACGGTGGCCCTGCCAGCCGCCCATGGAGGCAAAAGGCACTGCGTGATTACAGCAGCTCCTAATATCACATTCCAAAAACCAGAGTGCCCTGTAGACAGAGCTCATGGGATGTGCTTTTACTAGACCATTCAGGTCTGGCATATCTAAGAGAGTCTAAGTTTAAACTAGACTTATTTTGCAACTTAGATATAACAGAACAATCTTAAAATCTGAAGAGTAGTAACTGGAGAGAAGGAAGTCTCTGTTGACACTGTAAGGAAACAGATGTGGTTTGGAAATCTCTCATTGGAAAGAAGGGTGATCAGGTAATGCCTGCTCCTTGCCTGTTCCTGTGAGCAATCAGTGCTTCAAGTTCAAAATGAGAGATTGGTAAAGCCAAAGATGTTTCCATAATAGGGATGTTATTTCTTTTGCTGAATTTATAGACTTAAACATATACATATATATATTTCTATACATTTAAGGCTGGCCTAATCTGTATTTGGAACCCATTTATTTCTCTACTGTCAGCATCTCTGTATCGGTGGGGTGACCCCTATGTGGTACTAAC	-			P-0007909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	14	289	0	ENST00000237289.4:c.1906+1_1907-21del		p.X636_splice	ENST00000237289	NM_001270507.1	636							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	219	903	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56440713	56440713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	185	987	1	ENST00000407977.2:c.505G>A	p.Ala169Thr	p.A169T	ENST00000407977		169	Gct/Act						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	123	916	0	ENST00000371085.3:c.601C>A	p.Arg201Ser	p.R201S	ENST00000371085	NM_000516.4	201	Cgt/Agt						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198265040	198265040	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	234	886	0	ENST00000335508.6:c.2837A>C	p.Lys946Thr	p.K946T	ENST00000335508	NM_012433.2	946	aAa/aCa						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56448355	56448366	+	inframe_deletion	In_Frame_Del	DEL	TGTCGTCATCAC	TGTCGTCATCAC	-			P-0008245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	180	809	1	ENST00000407977.2:c.281_292del	p.Ser94_Asp97del	p.S94_D97del	ENST00000407977		94	aGTGATGACGACAat/aat						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70119759	70119778	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAGGGGCGCCCCTTGCCA	GAGAGGGGCGCCCCTTGCCA	-			P-0008245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	260	932	0	ENST00000245479.2:c.764_783del	p.Glu255GlyfsTer34	p.E255Gfs*34	ENST00000245479	NM_000346.3	254	cGAGAGGGGCGCCCCTTGCCA/c						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0006831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	278	309	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	358	425	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36164611	36164611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	194	424	0	ENST00000300305.3:c.1264G>A	p.Glu422Lys	p.E422K	ENST00000300305		422	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0006831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	357	449	1	ENST00000269305.4:c.365_366delTG	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g						NEWRECORD																																																																									
EPCAM	4072	MSKCC	GRCh37	2	47600989	47600989	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0006831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	436	567	0	ENST00000263735.4:c.227C>G	p.Ser76Ter	p.S76*	ENST00000263735	NM_002354.2	76	tCa/tGa						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55140775	55140775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	161	473	0	ENST00000257290.5:c.1636G>A	p.Val546Ile	p.V546I	ENST00000257290	NM_006206.4	546	Gtt/Att						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157527547	157527547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	456	554	3	ENST00000346085.5:c.5272G>A	p.Asp1758Asn	p.D1758N	ENST00000346085	NM_020732.3	1758	Gat/Aat						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29562710	29562710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	379	503	1	ENST00000358273.4:c.3790G>A	p.Glu1264Lys	p.E1264K	ENST00000358273	NM_001042492.2	1264	Gaa/Aaa						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42796331	42796331	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	427	553	0	ENST00000575354.2:c.2980C>T	p.Gln994Ter	p.Q994*	ENST00000575354	NM_015125.3	994	Cag/Tag						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212589848	212589848	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	38	367	0	ENST00000342788.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000342788	NM_005235.2	232	Cga/Tga						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55971120	55971120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	78	447	1	ENST00000263923.4:c.1677G>T	p.Met559Ile	p.M559I	ENST00000263923	NM_002253.2	559	atG/atT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	43	388	0	ENST00000269305.4:c.503A>C	p.His168Pro	p.H168P	ENST00000269305	NM_001126112.2	168	cAc/cCc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175533	112175903	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACAAACCATGCCACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCTTGTTCATCCAGCCTGAGTGCTCTGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGGAATGAAACAG	AAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACAAACCATGCCACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCTTGTTCATCCAGCCTGAGTGCTCTGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGGAATGAAACAG	-			P-0007781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	94	435	0	ENST00000257430.4:c.4244_4614del	p.Ser1415IlefsTer5	p.S1415Ifs*5	ENST00000257430	NM_000038.5	1414	gtAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACAAACCATGCCACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCTTGTTCATCCAGCCTGAGTGCTCTGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGGAATGAAACAGaa/gtaa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	169	329	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	286	359	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	201	370	1	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55603364	55603364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	100	428	1	ENST00000288135.5:c.2720G>T	p.Trp907Leu	p.W907L	ENST00000288135	NM_000222.2	907	tGg/tTg						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66286196	66286196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	33	579	1	ENST00000273854.3:c.1490G>A	p.Gly497Glu	p.G497E	ENST00000273854	NM_004439.5	497	gGa/gAa						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180049827	180049827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	45	387	0	ENST00000261937.6:c.1561C>A	p.Leu521Met	p.L521M	ENST00000261937	NM_182925.4	521	Ctg/Atg						NEWRECORD																																																																									
IRF4	3662	MSKCC	GRCh37	6	401642	401642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	185	278	0	ENST00000380956.4:c.964G>A	p.Asp322Asn	p.D322N	ENST00000380956	NM_001195286.1	322	Gac/Aac						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41730075	41730075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1423	717	973	0	ENST00000242208.4:c.454C>T	p.Arg152Cys	p.R152C	ENST00000242208	NM_002192.2	152	Cgt/Tgt						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70451272	70451272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	161	481	1	ENST00000373644.4:c.6112C>T	p.Arg2038Cys	p.R2038C	ENST00000373644	NM_030625.2	2038	Cgt/Tgt						NEWRECORD																																																																									
SH2B3	10019	MSKCC	GRCh37	12	111885577	111885577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	352	883	1	ENST00000341259.2:c.1354G>A	p.Ala452Thr	p.A452T	ENST00000341259	NM_005475.2	452	Gcc/Acc						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3820836	3820836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	246	383	0	ENST00000262367.5:c.2615C>T	p.Thr872Met	p.T872M	ENST00000262367	NM_004380.2	872	aCg/aTg						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47030608	47030608	+	intron_variant	Intron	SNP	G	G	C			P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	115	495	0	ENST00000329236.7:c.201+1711G>C		p.*67*	ENST00000329236	NM_001204466.1								NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70120413	70120413	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	604	726	0	ENST00000245479.2:c.1415del	p.Ala472ValfsTer51	p.A472Vfs*51	ENST00000245479	NM_000346.3	472	gCt/gt						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913399		P-0008957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	91	402	0	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15350470	15350470	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	58	209	0	ENST00000263377.2:c.3445C>T	p.Arg1149Trp	p.R1149W	ENST00000263377	NM_058243.2	1149	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	332	466	0	ENST00000269305.4:c.613T>C	p.Tyr205His	p.Y205H	ENST00000269305	NM_001126112.2	205	Tat/Cat						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162735826	162735826	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	132	491	0	ENST00000367921.3:c.1135A>T	p.Thr379Ser	p.T379S	ENST00000367921	NM_006182.2	379	Acc/Tcc						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91341566	91341566	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0008957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	168	340	2	ENST00000355112.3:c.3357G>T	p.Leu1119Phe	p.L1119F	ENST00000355112	NM_000057.2	1119	ttG/ttT						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9934946	9934946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	70	298	0	ENST00000330684.3:c.1344G>T	p.Glu448Asp	p.E448D	ENST00000330684	NM_001134407.1	448	gaG/gaT						NEWRECORD																																																																									
HOXB13	10481	MSKCC	GRCh37	17	46805642	46805642	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	181	605	0	ENST00000290295.7:c.314C>A	p.Thr105Asn	p.T105N	ENST00000290295	NM_006361.5	105	aCc/aAc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1219384	1219384	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0008957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	133	385	0	ENST00000326873.7:c.436A>T	p.Lys146Ter	p.K146*	ENST00000326873	NM_000455.4	146	Aag/Tag						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717661	89717684	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	CAGGACCCACACGACGGGAAGACA	CAGGACCCACACGACGGGAAGACA	-			P-0008957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	46	313	0	ENST00000371953.3:c.686_709del	p.Ser229_Lys237delinsTer	p.S229_K237delins*	ENST00000371953	NM_000314.4	229	tCAGGACCCACACGACGGGAAGACAag/tag						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39613900	39613901	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0008957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	90	457	0	ENST00000262039.4:c.1818_1819delinsTT	p.Glu607Ter	p.E607*	ENST00000262039	NM_002647.2	606	ccGGaa/ccTTaa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	217	407	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112154998	112154998	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	386	501	2	ENST00000257430.4:c.1269G>A	p.Trp423Ter	p.W423*	ENST00000257430	NM_000038.5	423	tgG/tgA						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55604673	55604673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	298	398	0	ENST00000288135.5:c.2881G>A	p.Gly961Ser	p.G961S	ENST00000288135	NM_000222.2	961	Ggc/Agc						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32184800	32184800	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	81	413	0	ENST00000375023.3:c.1783A>G	p.Ser595Gly	p.S595G	ENST00000375023	NM_004557.3	595	Agt/Ggt						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43615186	43615186	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	20	279	0	ENST00000355710.3:c.2600A>C	p.Glu867Ala	p.E867A	ENST00000355710	NM_020975.4	867	gAg/gCg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49433511	49433511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	229	680	1	ENST00000301067.7:c.8042G>A	p.Arg2681Gln	p.R2681Q	ENST00000301067	NM_003482.3	2681	cGg/cAg						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21562963	21562963	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	53	427	0	ENST00000382592.4:c.956A>G	p.Lys319Arg	p.K319R	ENST00000382592	NM_014572.2	319	aAg/aGg						NEWRECORD																																																																									
ARAF	369	MSKCC	GRCh37	X	47424743	47424743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1082	157	685	0	ENST00000377045.4:c.551G>A	p.Gly184Asp	p.G184D	ENST00000377045	NM_001654.4	184	gGt/gAt						NEWRECORD																																																																									
PLK2	10769	MSKCC	GRCh37	5	57751183	57751183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	33	395	0	ENST00000274289.3:c.1684C>T	p.Pro562Ser	p.P562S	ENST00000274289	NM_006622.3	562	Cct/Tct						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175925	112175925	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	59	351	0	ENST00000257430.4:c.4634C>G	p.Ser1545Ter	p.S1545*	ENST00000257430	NM_000038.5	1545	tCa/tGa						NEWRECORD																																																																									
HOXB13	10481	MSKCC	GRCh37	17	46805714	46805714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	100	656	0	ENST00000290295.7:c.242G>A	p.Gly81Asp	p.G81D	ENST00000290295	NM_006361.5	81	gGt/gAt						NEWRECORD																																																																									
SMARCB1	6598	MSKCC	GRCh37	22	24176342	24176342	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	36	455	0	ENST00000263121.7:c.1133T>C	p.Leu378Pro	p.L378P	ENST00000263121	NM_003073.3	378	cTt/cCt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0009480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	96	328	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125							NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	26	341	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577084	7577084	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	122	392	0	ENST00000269305.4:c.854A>T	p.Glu285Val	p.E285V	ENST00000269305	NM_001126112.2	285	gAg/gTg						NEWRECORD																																																																									
KLF4	9314	MSKCC	GRCh37	9	110250386	110250386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	28	421	0	ENST00000374672.4:c.289G>A	p.Glu97Lys	p.E97K	ENST00000374672	NM_004235.4	97	Gag/Aag						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110435246	110435246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	59	122	0	ENST00000375856.3:c.3155C>T	p.Thr1052Ile	p.T1052I	ENST00000375856	NM_003749.2	1052	aCc/aTc						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16258508	16258508	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	42	242	0	ENST00000375759.3:c.5773G>C	p.Glu1925Gln	p.E1925Q	ENST00000375759	NM_015001.2	1925	Gag/Cag						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47164240	47164240	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	137	273	0	ENST00000409792.3:c.1886A>T	p.Lys629Met	p.K629M	ENST00000409792	NM_014159.6	629	aAg/aTg						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89498522	89498522	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	19	277	0	ENST00000336596.2:c.2494G>C	p.Asp832His	p.D832H	ENST00000336596	NM_005233.5	832	Gat/Cat						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106156130	106156130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	83	318	0	ENST00000380013.4:c.1031C>A	p.Thr344Lys	p.T344K	ENST00000380013	NM_001127208.2	344	aCa/aAa						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106157600	106157600	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	65	390	0	ENST00000380013.4:c.2501G>C	p.Cys834Ser	p.C834S	ENST00000380013	NM_001127208.2	834	tGt/tCt						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187535351	187535351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	74	347	0	ENST00000441802.2:c.9223G>T	p.Asp3075Tyr	p.D3075Y	ENST00000441802	NM_005245.3	3075	Gac/Tac						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453149	140453149	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	110	261	0	ENST00000288602.6:c.1786G>C	p.Gly596Arg	p.G596R	ENST00000288602	NM_004333.4	596	Ggt/Cgt						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8471044	8471044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	83	364	0	ENST00000356435.5:c.3455G>T	p.Gly1152Val	p.G1152V	ENST00000356435		1152	gGg/gTg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49431831	49431831	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	19	209	0	ENST00000301067.7:c.9308C>G	p.Ala3103Gly	p.A3103G	ENST00000301067	NM_003482.3	3103	gCt/gGt						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115110087	115110087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	17	153	0	ENST00000257566.3:c.1791C>A	p.Phe597Leu	p.F597L	ENST00000257566	NM_016569.3	597	ttC/ttA						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110437494	110437494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	30	290	0	ENST00000375856.3:c.907C>T	p.Arg303Cys	p.R303C	ENST00000375856	NM_003749.2	303	Cgc/Tgc						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29548914	29548914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	19	205	0	ENST00000358273.4:c.1688C>T	p.Pro563Leu	p.P563L	ENST00000358273	NM_001042492.2	563	cCt/cTt						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29661899	29661899	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	114	361	0	ENST00000358273.4:c.5856G>C	p.Trp1952Cys	p.W1952C	ENST00000358273	NM_001042492.2	1952	tgG/tgC						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37868185	37868185	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	141	315	0	ENST00000269571.5:c.906C>G	p.Asn302Lys	p.N302K	ENST00000269571		302	aaC/aaG						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59760959	59760959	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	130	409	0	ENST00000259008.2:c.3448G>T	p.Ala1150Ser	p.A1150S	ENST00000259008	NM_032043.2	1150	Gct/Tct						NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52719044	52719044	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	253	312	2	ENST00000322088.6:c.820G>T	p.Val274Leu	p.V274L	ENST00000322088	NM_014225.5	274	Gtg/Ttg						NEWRECORD																																																																									
ERG	2078	MSKCC	GRCh37	21	39795341	39795341	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	100	300	0	ENST00000288319.7:c.379G>C	p.Val127Leu	p.V127L	ENST00000288319	NM_182918.3	127	Gtg/Ctg						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45394760	45394761	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	67	369	0	ENST00000262160.6:c.588_589del	p.Thr197SerfsTer8	p.T197Sfs*8	ENST00000262160	NM_005901.5	196	taTAct/tact						NEWRECORD																																																																									
MST1R	4486	MSKCC	GRCh37	3	49940384	49940384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	656	832	0	ENST00000296474.3:c.659G>A	p.Arg220His	p.R220H	ENST00000296474	NM_002447.2	220	cGt/cAt						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64577256	64577266	+	frameshift_variant	Frame_Shift_Del	DEL	TCTCGAGGATA	TCTCGAGGATA	-			P-0007223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	530	725	4	ENST00000337652.1:c.316_326del	p.Tyr106ArgfsTer7	p.Y106Rfs*7	ENST00000337652	NM_130803.2	106	TATCCTCGAGAa/a						NEWRECORD																																																																									
IL10	3586	MSKCC	GRCh37	1	206941988	206941988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	152	289	0	ENST00000423557.1:c.530G>A	p.Arg177Gln	p.R177Q	ENST00000423557	NM_000572.2	177	cGa/cAa						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266570	41266570	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	302	353	0	ENST00000349496.5:c.367C>T	p.Gln123Ter	p.Q123*	ENST00000349496	NM_001904.3	123	Cag/Tag						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89448592	89448592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	163	529	0	ENST00000336596.2:c.1556C>T	p.Thr519Met	p.T519M	ENST00000336596	NM_005233.5	519	aCg/aTg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173965	112173965	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	221	262	1	ENST00000257430.4:c.2674G>T	p.Glu892Ter	p.E892*	ENST00000257430	NM_000038.5	892	Gaa/Taa						NEWRECORD																																																																									
RAD21	5885	MSKCC	GRCh37	8	117866540	117866540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3440	436	984	0	ENST00000297338.2:c.1105G>A	p.Val369Ile	p.V369I	ENST00000297338	NM_006265.2	369	Gta/Ata						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	748	352	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32968926	32968926	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	425	546	0	ENST00000380152.3:c.9357A>C	p.Leu3119Phe	p.L3119F	ENST00000380152		3119	ttA/ttC						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0008735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	533	504	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0008735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	291	421	2	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0008735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	1013	648	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0007036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	367	483	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	323	341	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86667996	86667996	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	174	350	0	ENST00000274376.6:c.1760A>G	p.Asn587Ser	p.N587S	ENST00000274376	NM_002890.2	587	aAt/aGt						NEWRECORD																																																																									
HRAS	3265	MSKCC	GRCh37	11	534226	534226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	483	533	0	ENST00000311189.7:c.97G>T	p.Asp33Tyr	p.D33Y	ENST00000311189		33	Gac/Tac						NEWRECORD																																																																									
AKT2	208	MSKCC	GRCh37	19	40739786	40739786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	294	396	3	ENST00000392038.2:c.1439G>A	p.Arg480His	p.R480H	ENST00000392038	NM_001626.4	480	cGc/cAc						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41574725	41574725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	385	628	1	ENST00000263253.7:c.7010C>T	p.Pro2337Leu	p.P2337L	ENST00000263253	NM_001429.3	2337	cCa/cTa						NEWRECORD																																																																									
SHQ1	55164	MSKCC	GRCh37	3	72873620	72873620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1105	140	569	0	ENST00000325599.8:c.682G>A	p.Ala228Thr	p.A228T	ENST00000325599	NM_018130.2	228	Gcc/Acc						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0006065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	145	316	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat						NEWRECORD																																																																									
PLK2	10769	MSKCC	GRCh37	5	57755587	57755587	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	113	492	0	ENST00000274289.3:c.200C>G	p.Pro67Arg	p.P67R	ENST00000274289	NM_006622.3	67	cCg/cGg						NEWRECORD																																																																									
MALT1	10892	MSKCC	GRCh37	18	56376691	56376691	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0005115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	220	441	1	ENST00000348428.3:c.731T>A	p.Leu244Ter	p.L244*	ENST00000348428	NM_006785.3	244	tTg/tAg						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139399491	139399514	+	inframe_deletion	In_Frame_Del	DEL	CTGTTGCAGCCCTGGTCGCAGTGC	CTGTTGCAGCCCTGGTCGCAGTGC	-			P-0005115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	390	260	0	ENST00000277541.6:c.4629_4652del	p.His1544_Ser1551del	p.H1544_S1551del	ENST00000277541	NM_017617.3	1543	ggGCACTGCGACCAGGGCTGCAACAGc/ggc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913324		P-0006814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	29	352	1	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag						NEWRECORD																																																																									
NKX2-1	7080	MSKCC	GRCh37	14	36987045	36987047	+	inframe_deletion	In_Frame_Del	DEL	TAC	TAC	-			P-0006814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	28	226	0	ENST00000354822.5:c.642_644del	p.Lys214_Tyr215delinsAsn	p.K214_Y215delinsN	ENST00000354822	NM_001079668.2	214	aaGTAc/aac						NEWRECORD																																																																									
VHL	7428	MSKCC	GRCh37	3	10183773	10183773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	35	369	1	ENST00000256474.2:c.242C>A	p.Pro81Gln	p.P81Q	ENST00000256474	NM_000551.3	81	cCg/cAg						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117730760	117730760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1095	94	623	0	ENST00000368508.3:c.274G>A	p.Glu92Lys	p.E92K	ENST00000368508	NM_002944.2	92	Gaa/Aaa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	196	404	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76949316	76949316	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1210	288	617	0	ENST00000373344.5:c.481G>T	p.Gly161Ter	p.G161*	ENST00000373344	NM_000489.3	161	Gga/Tga						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207065	1207065	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	182	382	0	ENST00000326873.7:c.157delG	p.Asp53ThrfsTer11	p.D53Tfs*11	ENST00000326873	NM_000455.4	51	atG/at						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55984794	55984794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	294	478	0	ENST00000263923.4:c.335C>T	p.Ser112Leu	p.S112L	ENST00000263923	NM_002253.2	112	tCg/tTg						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602584	10602584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	200	310	1	ENST00000171111.5:c.994G>T	p.Gly332Cys	p.G332C	ENST00000171111	NM_203500.1	332	Ggc/Tgc						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55971151	55971151	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	131	191	0	ENST00000263923.4:c.1646G>A	p.Arg549Lys	p.R549K	ENST00000263923	NM_002253.2	549	aGg/aAg						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66231715	66231715	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	214	459	0	ENST00000273854.3:c.1985C>A	p.Ala662Asp	p.A662D	ENST00000273854	NM_004439.5	662	gCt/gAt						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1293920	1293920	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	391	346	1	ENST00000310581.5:c.1081G>T	p.Val361Leu	p.V361L	ENST00000310581	NM_198253.2	361	Gtg/Ttg						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2976808	2976808	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1150	232	537	0	ENST00000396946.4:c.1204A>T	p.Lys402Ter	p.K402*	ENST00000396946	NM_032415.4	402	Aag/Tag						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81334737	81334737	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	236	483	0	ENST00000222390.5:c.1979G>T	p.Gly660Val	p.G660V	ENST00000222390	NM_000601.4	660	gGg/gTg						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5123080	5123080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	212	471	0	ENST00000381652.3:c.3136G>A	p.Glu1046Lys	p.E1046K	ENST00000381652	NM_004972.3	1046	Gaa/Aaa						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70333123	70333123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1064	272	470	1	ENST00000373644.4:c.1028C>A	p.Pro343Gln	p.P343Q	ENST00000373644	NM_030625.2	343	cCa/cAa						NEWRECORD																																																																									
SDHAF2	54949	MSKCC	GRCh37	11	61205552	61205552	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	263	481	0	ENST00000301761.2:c.337A>T	p.Ser113Cys	p.S113C	ENST00000301761	NM_017841.2	113	Agt/Tgt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49435967	49435967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			996	256	438	0	ENST00000301067.7:c.6014G>A	p.Arg2005His	p.R2005H	ENST00000301067	NM_003482.3	2005	cGc/cAc						NEWRECORD																																																																									
SUZ12	23512	MSKCC	GRCh37	17	30264353	30264353	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	86	138	3	ENST00000322652.5:c.88G>T	p.Ala30Ser	p.A30S	ENST00000322652	NM_015355.2	30	Gcg/Tcg						NEWRECORD																																																																									
GATA1	2623	MSKCC	GRCh37	X	48650619	48650619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1088	290	480	1	ENST00000376670.3:c.589C>A	p.Pro197Thr	p.P197T	ENST00000376670	NM_002049.3	197	Cct/Act						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11101952	11101965	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCAGCAGAAGAT	AAGCAGCAGAAGAT	-			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	131	333	0	ENST00000344626.4:c.1372_1385delAAGCAGCAGAAGAT	p.Lys458ArgfsTer16	p.K458Rfs*16	ENST00000344626	NM_003072.3	458	AAGCAGCAGAAGATc/c						NEWRECORD																																																																									
RAD51B	5890	MSKCC	GRCh37	14	68331843	68331844	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	188	383	0	ENST00000487270.1:c.440_441delTT	p.Phe147Ter	p.F147*	ENST00000487270	NM_133509.3	147	TTt/t						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0004839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	239	533	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48584593	48584593	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	268	535	0	ENST00000342988.3:c.766C>T	p.Gln256Ter	p.Q256*	ENST00000342988	NM_005359.5	256	Cag/Tag						NEWRECORD																																																																									
HLA-A	3105	MSKCC	GRCh37	6	29913010	29913010	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C	rs112569059		P-0004839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	235	490	0	ENST00000376809.5:c.1046-1G>C		p.X349_splice	ENST00000376809	NM_002116.7	349							NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32905124	32905127	+	frameshift_variant	Frame_Shift_Del	DEL	GACA	GACA	-	rs1455701926		P-0004839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	235	554	0	ENST00000380152.3:c.755_758del	p.Asp252ValfsTer24	p.D252Vfs*24	ENST00000380152		250	gtGACA/gt						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52668637	52668653	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGCATTTTAATTTGC	TGGGCATTTTAATTTGC	-			P-0004839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	298	652	0	ENST00000394830.3:c.1266_1282del	p.Gln422HisfsTer16	p.Q422Hfs*16	ENST00000394830	NM_018313.4	422	caGCAAATTAAAATGCCCAta/cata						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1035	51	329	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	149	334	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0004872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	89	232	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174868	112174868	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	211	449	0	ENST00000257430.4:c.3577C>T	p.Gln1193Ter	p.Q1193*	ENST00000257430	NM_000038.5	1193	Cag/Tag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	126	262	1	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	374	593	0	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108186769	108186769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	171	421	2	ENST00000278616.4:c.6127G>A	p.Gly2043Ser	p.G2043S	ENST00000278616	NM_000051.3	2043	Ggc/Agc						NEWRECORD																																																																									
SH2B3	10019	MSKCC	GRCh37	12	111885901	111885901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs79819500		P-0004872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	374	624	0	ENST00000341259.2:c.1523G>A	p.Arg508Gln	p.R508Q	ENST00000341259	NM_005475.2	508	cGg/cAg						NEWRECORD																																																																									
TSHR	7253	MSKCC	GRCh37	14	81609825	81609825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	184	315	0	ENST00000298171.2:c.1423C>T	p.Leu475Phe	p.L475F	ENST00000298171	NM_000369.2	475	Ctc/Ttc						NEWRECORD																																																																									
CDKN1B	1027	MSKCC	GRCh37	12	12870948	12870948	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	229	413	0	ENST00000228872.4:c.176del	p.Lys59SerfsTer12	p.K59Sfs*12	ENST00000228872	NM_004064.3	59	Aag/ag						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123176470	123176470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	127	427	0	ENST00000218089.9:c.437G>A	p.Arg146Gln	p.R146Q	ENST00000218089	NM_001042749.1	146	cGa/cAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0008075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	135	578	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0008075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	62	400	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175476	112175476	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	49	326	0	ENST00000257430.4:c.4188del	p.Phe1396LeufsTer19	p.F1396Lfs*19	ENST00000257430	NM_000038.5	1395	agT/ag						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70117848	70117848	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0008075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	215	332	0	ENST00000245479.2:c.316A>T	p.Lys106Ter	p.K106*	ENST00000245479	NM_000346.3	106	Aag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579505	7579505	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	69	348	0	ENST00000269305.4:c.182del	p.Asp61ValfsTer62	p.D61Vfs*62	ENST00000269305	NM_001126112.2	61	gAt/gt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	447	335	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	424	551	1	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	498248	498248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	85	126	0	ENST00000399788.2:c.10G>A	p.Val4Met	p.V4M	ENST00000399788	NM_001042603.1	4	Gtg/Atg						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41265908	41266236	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACA	TTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACA	-			P-0006359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			28	36	47	0	ENST00000349496.5:c.14-109_233del		p.X5_splice	ENST00000349496	NM_001904.3	5							NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70118931	70118948	+	inframe_deletion	In_Frame_Del	DEL	ACCACCCGGATTACAAGT	ACCACCCGGATTACAAGT	-			P-0006359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1245	390	447	0	ENST00000245479.2:c.507_524del	p.His169_Tyr174del	p.H169_Y174del	ENST00000245479	NM_000346.3	168	gACCACCCGGATTACAAGTac/gac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006073-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	44	432	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006073-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	121	436	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0006073-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1089	32	559	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0008407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	57	620	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11189844	11189844	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	167	373	0	ENST00000361445.4:c.5665T>G	p.Phe1889Val	p.F1889V	ENST00000361445	NM_004958.3	1889	Ttc/Gtc						NEWRECORD																																																																									
HIST3H3	8290	MSKCC	GRCh37	1	228612897	228612897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	172	646	1	ENST00000366696.1:c.130C>T	p.Pro44Ser	p.P44S	ENST00000366696	NM_003493.2	44	Ccc/Tcc						NEWRECORD																																																																									
XPO1	7514	MSKCC	GRCh37	2	61712993	61712993	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	109	521	1	ENST00000401558.2:c.2418A>G	p.Ile806Met	p.I806M	ENST00000401558	NM_003400.3	806	atA/atG						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	152007064	152007064	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0007888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	100	477	0	ENST00000262189.6:c.836C>G	p.Ser279Ter	p.S279*	ENST00000262189	NM_170606.2	279	tCa/tGa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8521315	8521315	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	56	296	0	ENST00000356435.5:c.923T>C	p.Leu308Pro	p.L308P	ENST00000356435		308	cTg/cCg						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43609055	43609055	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	87	580	1	ENST00000355710.3:c.1811C>A	p.Ala604Asp	p.A604D	ENST00000355710	NM_020975.4	604	gCt/gAt						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99452063	99452063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	162	448	0	ENST00000268035.6:c.1397C>T	p.Thr466Met	p.T466M	ENST00000268035	NM_000875.3	466	aCg/aTg						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46243370	46243370	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	95	446	0	ENST00000334344.6:c.1725del	p.Pro576GlnfsTer5	p.P576Qfs*5	ENST00000334344	NM_152641.2	575	Ttt/tt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0008841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	64	399	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0008841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	54	267	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	61	282	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc						NEWRECORD																																																																									
RPS6KA4	8986	MSKCC	GRCh37	11	64138172	64138172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	107	348	0	ENST00000334205.4:c.2095C>T	p.Arg699Cys	p.R699C	ENST00000334205	NM_003942.2	699	Cgc/Tgc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009936-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	74	183	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187510153	187510153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009936-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	125	549	0	ENST00000441802.2:c.13360G>A	p.Glu4454Lys	p.E4454K	ENST00000441802	NM_005245.3	4454	Gaa/Aaa						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50467924	50467924	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009936-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	51	228	0	ENST00000331340.3:c.1159G>C	p.Glu387Gln	p.E387Q	ENST00000331340	NM_006060.4	387	Gag/Cag						NEWRECORD																																																																									
CDC73	79577	MSKCC	GRCh37	1	193117039	193117039	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009936-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	86	411	4	ENST00000367435.3:c.772G>T	p.Ala258Ser	p.A258S	ENST00000367435	NM_024529.4	258	Gcc/Tcc						NEWRECORD																																																																									
PIK3CB	5291	MSKCC	GRCh37	3	138409957	138409957	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009936-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	123	378	0	ENST00000289153.2:c.1921C>T	p.Gln641Ter	p.Q641*	ENST00000289153	NM_006219.2	641	Caa/Taa						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43607577	43607577	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009936-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	106	314	0	ENST00000355710.3:c.1553C>G	p.Ser518Cys	p.S518C	ENST00000355710	NM_020975.4	518	tCc/tGc						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115117323	115117323	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009936-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	391	477	0	ENST00000257566.3:c.851A>G	p.Tyr284Cys	p.Y284C	ENST00000257566	NM_016569.3	284	tAc/tGc						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3786183	3786183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009936-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	178	494	0	ENST00000262367.5:c.4582G>A	p.Glu1528Lys	p.E1528K	ENST00000262367	NM_004380.2	1528	Gaa/Aaa						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15995180	15995180	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009936-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	263	434	0	ENST00000268712.3:c.3013del	p.Glu1005LysfsTer10	p.E1005Kfs*10	ENST00000268712	NM_006311.3	1005	Gaa/aa						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	247	383	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	18	378	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat						NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056427	26056427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	25	278	0	ENST00000343677.2:c.230A>G	p.Asn77Ser	p.N77S	ENST00000343677	NM_005319.3	77	aAc/aGc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178927411	178927411	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	183	598	0	ENST00000263967.3:c.1174T>C	p.Tyr392His	p.Y392H	ENST00000263967	NM_006218.2	392	Tac/Cac						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68842439	68842439	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	186	583	3	ENST00000261769.5:c.504del	p.Gly169AlafsTer46	p.G169Afs*46	ENST00000261769	NM_004360.3	167	gAa/ga						NEWRECORD																																																																									
CBFB	865	MSKCC	GRCh37	16	67070630	67070642	+	frameshift_variant	Frame_Shift_Del	DEL	ATGTCGACTTAGA	ATGTCGACTTAGA	-			P-0008760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	244	574	0	ENST00000412916.2:c.255_267del	p.Tyr85Ter	p.Y85*	ENST00000412916		85	tATGTCGACTTAGAa/ta						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66467512	66467512	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	95	329	0	ENST00000273854.3:c.757T>A	p.Ser253Thr	p.S253T	ENST00000273854	NM_004439.5	253	Tcc/Acc						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15350581	15350581	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	60	297	0	ENST00000263377.2:c.3334G>C	p.Glu1112Gln	p.E1112Q	ENST00000263377	NM_058243.2	1112	Gag/Cag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1122	380	783	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913386		P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	207	393	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc						NEWRECORD																																																																									
CDKN1B	1027	MSKCC	GRCh37	12	12870952	12870952	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	200	597	1	ENST00000228872.4:c.179G>A	p.Trp60Ter	p.W60*	ENST00000228872	NM_004064.3	60	tGg/tAg						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187518020	187518020	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755404071		P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	179	495	2	ENST00000441802.2:c.12674C>T	p.Thr4225Met	p.T4225M	ENST00000441802	NM_005245.3	4225	aCg/aTg						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27101327	27101327	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	390	648	0	ENST00000324856.7:c.4609C>T	p.Gln1537Ter	p.Q1537*	ENST00000324856	NM_006015.4	1537	Cag/Tag						NEWRECORD																																																																									
MSH2	4436	MSKCC	GRCh37	2	47630396	47630396	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	257	568	0	ENST00000233146.2:c.66C>G	p.Phe22Leu	p.F22L	ENST00000233146	NM_000251.2	22	ttC/ttG						NEWRECORD																																																																									
PMS1	5378	MSKCC	GRCh37	2	190728779	190728779	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	223	399	0	ENST00000441310.2:c.2167G>T	p.Glu723Ter	p.E723*	ENST00000441310	NM_000534.4	723	Gaa/Taa						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212295792	212295792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	270	651	1	ENST00000342788.4:c.2521C>T	p.His841Tyr	p.H841Y	ENST00000342788	NM_005235.2	841	Cat/Tat						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215646195	215646195	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	171	291	1	ENST00000260947.4:c.403G>T	p.Asp135Tyr	p.D135Y	ENST00000260947	NM_000465.2	135	Gat/Tat						NEWRECORD																																																																									
INHA	3623	MSKCC	GRCh37	2	220440045	220440045	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1256	163	794	1	ENST00000243786.2:c.898C>A	p.Pro300Thr	p.P300T	ENST00000243786	NM_002191.3	300	Cca/Aca						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89390065	89390065	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	220	467	0	ENST00000336596.2:c.815-1G>T		p.X272_splice	ENST00000336596	NM_005233.5	272							NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89390221	89390221	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	214	532	0	ENST00000336596.2:c.970C>G	p.Arg324Gly	p.R324G	ENST00000336596	NM_005233.5	324	Cga/Gga						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142204114	142204114	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	117	454	3	ENST00000350721.4:c.6089C>A	p.Ala2030Glu	p.A2030E	ENST00000350721	NM_001184.3	2030	gCg/gAg						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117609749	117609749	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	252	582	0	ENST00000368508.3:c.6950A>G	p.Gln2317Arg	p.Q2317R	ENST00000368508	NM_002944.2	2317	cAa/cGa						NEWRECORD																																																																									
PMS2	5395	MSKCC	GRCh37	7	6026817	6026817	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	76	191	0	ENST00000265849.7:c.1579A>T	p.Arg527Trp	p.R527W	ENST00000265849	NM_000535.5	527	Agg/Tgg						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116339742	116339742	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	152	520	0	ENST00000397752.3:c.604A>G	p.Asn202Asp	p.N202D	ENST00000397752	NM_000245.2	202	Aat/Gat						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	463372	463372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	320	663	1	ENST00000399788.2:c.899G>T	p.Gly300Val	p.G300V	ENST00000399788	NM_001042603.1	300	gGt/gTt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49420870	49420870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	357	604	2	ENST00000301067.7:c.14879G>A	p.Arg4960Gln	p.R4960Q	ENST00000301067	NM_003482.3	4960	cGa/cAa						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28919668	28919668	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	311	583	0	ENST00000282397.4:c.2269C>A	p.Leu757Met	p.L757M	ENST00000282397	NM_002019.4	757	Ctg/Atg						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32910950	32910950	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1151	450	880	2	ENST00000380152.3:c.2458G>T	p.Asp820Tyr	p.D820Y	ENST00000380152		820	Gat/Tat						NEWRECORD																																																																									
GREM1	26585	MSKCC	GRCh37	15	33023262	33023262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1242	311	925	1	ENST00000300177.4:c.371C>A	p.Ser124Tyr	p.S124Y	ENST00000300177	NM_001191322.1	124	tCt/tAt						NEWRECORD																																																																									
PDPK1	5170	MSKCC	GRCh37	16	2647734	2647734	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	319	679	0	ENST00000342085.4:c.1637G>C	p.Arg546Pro	p.R546P	ENST00000342085	NM_002613.4	546	cGa/cCa						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604707	48604707	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	114	633	0	ENST00000342988.3:c.1529G>C	p.Gly510Ala	p.G510A	ENST00000342988	NM_005359.5	510	gGa/gCa						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221243	1221243	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	448	703	1	ENST00000326873.7:c.766G>T	p.Glu256Ter	p.E256*	ENST00000326873	NM_000455.4	256	Gaa/Taa						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5219979	5219979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	278	598	0	ENST00000357368.4:c.3736G>T	p.Val1246Leu	p.V1246L	ENST00000357368	NM_002850.3	1246	Gtg/Ttg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40713421	40713421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	237	578	1	ENST00000373198.4:c.4094C>A	p.Thr1365Lys	p.T1365K	ENST00000373198	NM_133170.3	1365	aCg/aAg						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39933895	39933895	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1290	127	805	0	ENST00000378444.4:c.704C>A	p.Ser235Tyr	p.S235Y	ENST00000378444	NM_001123385.1	235	tCt/tAt						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70357736	70357736	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	135	791	1	ENST00000374080.3:c.5987G>T	p.Ser1996Ile	p.S1996I	ENST00000374080		1996	aGt/aTt						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123195724	123195724	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0006793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1394	115	783	0	ENST00000218089.9:c.1638G>T	p.Arg546Ser	p.R546S	ENST00000218089	NM_001042749.1	546	agG/agT						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115966	8115966	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	13	115	0	ENST00000346208.3:c.1312del	p.Met438TrpfsTer37	p.M438Wfs*37	ENST00000346208		438	Atg/tg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0006316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	257	649	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0006316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	403	436	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63554630	63554630	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	88	328	0	ENST00000307078.5:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000307078	NM_004655.3	37	Cag/Tag						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72992807	72992807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	136	924	2	ENST00000268489.5:c.1238C>A	p.Thr413Asn	p.T413N	ENST00000268489	NM_006885.3	413	aCc/aAc						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47044962	47044962	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	350	713	0	ENST00000329236.7:c.2054T>C	p.Leu685Pro	p.L685P	ENST00000329236	NM_001204466.1	685	cTc/cCc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175112	112175139	+	frameshift_variant	Frame_Shift_Del	DEL	GTAGTTCATTATCATCTTTGTCATCAGC	GTAGTTCATTATCATCTTTGTCATCAGC	-			P-0006316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	107	259	0	ENST00000257430.4:c.3821_3848del	p.Cys1274LeufsTer5	p.C1274Lfs*5	ENST00000257430	NM_000038.5	1274	tGTAGTTCATTATCATCTTTGTCATCAGCt/tt						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115118701	115118701	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	259	590	0	ENST00000257566.3:c.640del	p.Ser214GlnfsTer29	p.S214Qfs*29	ENST00000257566	NM_016569.3	214	Tca/ca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0006458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	394	415	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162729610	162729610	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	60	278	0	ENST00000367921.3:c.696G>C	p.Leu232Phe	p.L232F	ENST00000367921	NM_006182.2	232	ttG/ttC						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176638779	176638779	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	73	418	0	ENST00000439151.2:c.3379C>G	p.Leu1127Val	p.L1127V	ENST00000439151	NM_022455.4	1127	Ctc/Gtc						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57860054	57860054	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201621277		P-0006458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1423	149	608	2	ENST00000228682.2:c.794G>A	p.Arg265Gln	p.R265Q	ENST00000228682	NM_005269.2	265	cGg/cAg						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57480484	57480484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	179	357	0	ENST00000371085.3:c.479G>C	p.Arg160Pro	p.R160P	ENST00000371085	NM_000516.4	160	cGt/cCt						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55598073	55598324	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGAGGATGACGAGTTGGCCCTAGACTTAGAAGACTTGCTGAGCTTTTCTTACCAGGTGGCAAAGGGCATGGCTTTCCTCGCCTCCAAGAATGTAAGTGGGAGTGATTCTCTAAAGAGTTTTGTGTTTTGTTTTTTTGATTTTTTTTTTTTTTTTTTTTTTTTTGAGAACAGAGCATTTTAGAGCCATAGTTAAAATGCAGAATGTCATTTTGAAGTGTGGTAACCAAAAGCAGAGGAAATTTAGTTTCTTC	TGGAGGATGACGAGTTGGCCCTAGACTTAGAAGACTTGCTGAGCTTTTCTTACCAGGTGGCAAAGGGCATGGCTTTCCTCGCCTCCAAGAATGTAAGTGGGAGTGATTCTCTAAAGAGTTTTGTGTTTTGTTTTTTTGATTTTTTTTTTTTTTTTTTTTTTTTTGAGAACAGAGCATTTTAGAGCCATAGTTAAAATGCAGAATGTCATTTTGAAGTGTGGTAACCAAAAGCAGAGGAAATTTAGTTTCTTC	-			P-0006458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	60	552	0	ENST00000288135.5:c.2270_2361+160del		p.X757_splice	ENST00000288135	NM_000222.2	757							NEWRECORD																																																																									
CD79A	973	MSKCC	GRCh37	19	42383340	42383342	+	frameshift_variant	Frame_Shift_Del	DEL	CAC	CAC	AT			P-0006458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1861	135	546	2	ENST00000221972.3:c.360_362delinsAT	p.Thr121SerfsTer71	p.T121Sfs*71	ENST00000221972	NM_021601.3	120	ggCACc/ggATc						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134670307	134670307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	52	434	2	ENST00000398015.3:c.218T>C	p.Leu73Pro	p.L73P	ENST00000398015	NM_004441.4	73	cTc/cCc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540652		P-0005496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	443	410	0	ENST00000269305.4:c.743G>C	p.Arg248Pro	p.R248P	ENST00000269305	NM_001126112.2	248	cGg/cCg						NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35876145	35876145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	431	413	0	ENST00000303115.3:c.937G>A	p.Asp313Asn	p.D313N	ENST00000303115	NM_002185.3	313	Gac/Aac						NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36937904	36937904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2233	577	675	0	ENST00000361632.4:c.932G>T	p.Arg311Leu	p.R311L	ENST00000361632		311	cGc/cTc						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52436314	52436314	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	444	448	1	ENST00000460680.1:c.2180A>T	p.Lys727Met	p.K727M	ENST00000460680	NM_004656.3	727	aAg/aTg						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55569934	55569934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	278	418	0	ENST00000288135.5:c.801C>A	p.Phe267Leu	p.F267L	ENST00000288135	NM_000222.2	267	ttC/ttA						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139391625	139391625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	727	395	0	ENST00000277541.6:c.6566G>A	p.Cys2189Tyr	p.C2189Y	ENST00000277541	NM_017617.3	2189	tGc/tAc						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16021212	16021212	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	332	387	0	ENST00000268712.3:c.2045A>T	p.His682Leu	p.H682L	ENST00000268712	NM_006311.3	682	cAt/cTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0004823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	163	318	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0004823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	208	418	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0004823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	72	499	2	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55953890	55953890	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	15	331	0	ENST00000263923.4:c.3546G>T	p.Glu1182Asp	p.E1182D	ENST00000263923	NM_002253.2	1182	gaG/gaT						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63411291	63411291	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	308	413	0	ENST00000330258.3:c.1876C>T	p.Arg626Ter	p.R626*	ENST00000330258	NM_152424.3	626	Cga/Tga						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63411695	63411695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	108	420	1	ENST00000330258.3:c.1472G>A	p.Arg491His	p.R491H	ENST00000330258	NM_152424.3	491	cGc/cAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0008560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	84	293	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126							NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0008560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	41	176	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga						NEWRECORD																																																																									
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121913482		P-0008560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	40	205	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30672306	30672306	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	65	525	1	ENST00000376406.3:c.4654A>T	p.Thr1552Ser	p.T1552S	ENST00000376406	NM_014641.2	1552	Aca/Tca						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47032597	47032597	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0008560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	58	451	0	ENST00000329236.7:c.271+1G>A		p.X91_splice	ENST00000329236	NM_001204466.1	91							NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53250023	53250023	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0008560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	115	633	1	ENST00000375401.3:c.226G>C	p.Glu76Gln	p.E76Q	ENST00000375401	NM_004187.3	76	Gag/Cag						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	150	496	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg						NEWRECORD																																																																									
RARA	5914	MSKCC	GRCh37	17	38512269	38512269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	113	383	0	ENST00000254066.5:c.1180C>T	p.Arg394Trp	p.R394W	ENST00000254066	NM_000964.3	394	Cgg/Tgg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49415891	49415891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	181	433	0	ENST00000301067.7:c.16456G>A	p.Val5486Met	p.V5486M	ENST00000301067	NM_003482.3	5486	Gtg/Atg						NEWRECORD																																																																									
RARA	5914	MSKCC	GRCh37	17	38508173	38508173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	154	414	0	ENST00000254066.5:c.481G>A	p.Asp161Asn	p.D161N	ENST00000254066	NM_000964.3	161	Gac/Aac						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100933485	100933510	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TACAGAGAAGAAAAAAAAGAAATTCA	TACAGAGAAGAAAAAAAAGAAATTCA	-			P-0008124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	28	234	0	ENST00000325455.5:c.1907-27_1907-2del		p.X636_splice	ENST00000325455	NM_001202474.3	636							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	400	383	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162688917	162688917	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	422	411	0	ENST00000367921.3:c.64A>G	p.Lys22Glu	p.K22E	ENST00000367921	NM_006182.2	22	Aaa/Gaa						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52637579	52637579	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	641	612	1	ENST00000394830.3:c.2737G>T	p.Glu913Ter	p.E913*	ENST00000394830	NM_018313.4	913	Gaa/Taa						NEWRECORD																																																																									
MITF	4286	MSKCC	GRCh37	3	69788784	69788784	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	230	408	0	ENST00000352241.4:c.36A>C	p.Glu12Asp	p.E12D	ENST00000352241	NM_198159.2	12	gaA/gaC						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142188201	142188201	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1097	164	381	0	ENST00000350721.4:c.6530G>A	p.Trp2177Ter	p.W2177*	ENST00000350721	NM_001184.3	2177	tGg/tAg						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149514427	149514427	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	691	522	0	ENST00000261799.4:c.517T>G	p.Tyr173Asp	p.Y173D	ENST00000261799	NM_002609.3	173	Tat/Gat						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49431430	49431430	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	385	406	0	ENST00000301067.7:c.9709G>T	p.Glu3237Ter	p.E3237*	ENST00000301067	NM_003482.3	3237	Gag/Tag						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	10274024	10274024	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	233	472	0	ENST00000330684.3:c.245T>C	p.Leu82Pro	p.L82P	ENST00000330684	NM_001134407.1	82	cTc/cCc						NEWRECORD																																																																									
CCNE1	898	MSKCC	GRCh37	19	30313454	30313454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	504	504	1	ENST00000262643.3:c.1054G>T	p.Val352Phe	p.V352F	ENST00000262643	NM_001238.2	352	Gtc/Ttc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	76	352	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0009351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	19	561	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0009351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			66	14	487	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101904947	101904947	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			57	18	342	1	ENST00000374994.4:c.935G>T	p.Gly312Val	p.G312V	ENST00000374994	NM_004612.2	312	gGt/gTt						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55976873	55976873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	12	492	0	ENST00000263923.4:c.1039C>T	p.Arg347Cys	p.R347C	ENST00000263923	NM_002253.2	347	Cgt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0006623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	96	346	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	71	299	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106747	27106747	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	60	324	0	ENST00000324856.7:c.6358G>T	p.Glu2120Ter	p.E2120*	ENST00000324856	NM_006015.4	2120	Gaa/Taa						NEWRECORD																																																																									
RAF1	5894	MSKCC	GRCh37	3	12626680	12626680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	80	392	0	ENST00000251849.4:c.1609G>A	p.Val537Ile	p.V537I	ENST00000251849	NM_002880.3	537	Gta/Ata						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0007006-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	318	638	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89653796	89653798	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0007006-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	82	364	0	ENST00000371953.3:c.97_99delATT	p.Ile33del	p.I33del	ENST00000371953	NM_000314.4	32	ATT/-						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41572252	41572254	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TCT	TCT	-			P-0007006-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	91	344	0	ENST00000263253.7:c.4785_4787delCTT	p.Phe1596del	p.F1596del	ENST00000263253	NM_001429.3	1594	gTCTtc/gtc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164620	112164620	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007006-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	67	401	0	ENST00000257430.4:c.1694A>T	p.Glu565Val	p.E565V	ENST00000257430	NM_000038.5	565	gAa/gTa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0008846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	226	499	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	49	504	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0008818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	53	470	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971107	21971107	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	28	275	0	ENST00000304494.5:c.251A>T	p.Asp84Val	p.D84V	ENST00000304494	NM_000077.4	84	gAc/gTc						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16254887	16254887	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	64	381	0	ENST00000375759.3:c.2152G>T	p.Glu718Ter	p.E718*	ENST00000375759	NM_015001.2	718	Gag/Tag						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65332892	65332892	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0008348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	18	249	0	ENST00000342505.4:c.648-1G>T		p.X216_splice	ENST00000342505	NM_002227.2	216							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	309	360	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	226	354	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47165843	47165843	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	336	568	0	ENST00000409792.3:c.283G>T	p.Glu95Ter	p.E95*	ENST00000409792	NM_014159.6	95	Gaa/Taa						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48603148	48603148	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0006433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	202	281	1	ENST00000342988.3:c.1447+2T>G		p.X483_splice	ENST00000342988	NM_005359.5	483							NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023232	27023233	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	A			P-0006433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	226	206	0	ENST00000324856.7:c.338_339delinsA	p.Leu113GlnfsTer119	p.L113Qfs*119	ENST00000324856	NM_006015.4	113	cTG/cA						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	24	214	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	50	397	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10599868	10599868	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	55	327	1	ENST00000171111.5:c.1708G>T	p.Gly570Ter	p.G570*	ENST00000171111	NM_203500.1	570	Gga/Tga						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47045016	47045016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	31	200	0	ENST00000329236.7:c.2108C>T	p.Ser703Leu	p.S703L	ENST00000329236	NM_001204466.1	703	tCa/tTa						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149435782	149435782	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	38	362	0	ENST00000286301.3:c.2442T>A	p.Asn814Lys	p.N814K	ENST00000286301	NM_005211.3	814	aaT/aaA						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152265479	152265479	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766779326		P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	34	242	0	ENST00000206249.3:c.932C>T	p.Thr311Met	p.T311M	ENST00000206249	NM_000125.3	311	aCg/aTg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108121575	108121575	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	30	380	0	ENST00000278616.4:c.1383A>T	p.Glu461Asp	p.E461D	ENST00000278616	NM_000051.3	461	gaA/gaT						NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14029573	14029573	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	17	149	0	ENST00000311895.7:c.1784G>T	p.Arg595Met	p.R595M	ENST00000311895	NM_005236.2	595	aGg/aTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579370	7579370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	39	304	0	ENST00000269305.4:c.317G>T	p.Ser106Ile	p.S106I	ENST00000269305	NM_001126112.2	106	aGc/aTc						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484597	57484597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	13	175	0	ENST00000371085.3:c.681G>T	p.Gln227His	p.Q227H	ENST00000371085	NM_000516.4	227	caG/caT						NEWRECORD																																																																									
GATA1	2623	MSKCC	GRCh37	X	48649559	48649559	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	33	261	0	ENST00000376670.3:c.43C>A	p.Leu15Ile	p.L15I	ENST00000376670	NM_002049.3	15	Ctc/Atc						NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100611216	100611216	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	23	150	0	ENST00000308731.7:c.1390T>A	p.Cys464Ser	p.C464S	ENST00000308731	NM_000061.2	464	Tgc/Agc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0007380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	118	288	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	163	285	0	ENST00000269305.4:c.770T>G	p.Leu257Arg	p.L257R	ENST00000269305	NM_001126112.2	257	cTg/cGg						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	333	607	0	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg						NEWRECORD																																																																									
JUN	3725	MSKCC	GRCh37	1	59248657	59248657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	93	400	1	ENST00000371222.2:c.86G>A	p.Ser29Asn	p.S29N	ENST00000371222	NM_002228.3	29	aGt/aAt						NEWRECORD																																																																									
ETV6	2120	MSKCC	GRCh37	12	12022357	12022357	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0007380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	126	550	0	ENST00000396373.4:c.464-1G>A		p.X155_splice	ENST00000396373	NM_001987.4	155							NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3808929	3808929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	85	359	0	ENST00000262367.5:c.3295G>A	p.Glu1099Lys	p.E1099K	ENST00000262367	NM_004380.2	1099	Gaa/Aaa						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29527441	29527441	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0007380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	34	260	0	ENST00000358273.4:c.890A>C	p.Lys297Thr	p.K297T	ENST00000358273	NM_001042492.2	297	aAg/aCg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0006125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	156	661	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	200	410	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178096394	178096394	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	44	510	0	ENST00000397062.3:c.937C>G	p.Leu313Val	p.L313V	ENST00000397062	NM_006164.4	313	Cta/Gta						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98268780	98268780	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	55	660	0	ENST00000331920.6:c.303C>G	p.Phe101Leu	p.F101L	ENST00000331920	NM_000264.3	101	ttC/ttG						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108165758	108165758	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	61	643	0	ENST00000278616.4:c.4881G>C	p.Gln1627His	p.Q1627H	ENST00000278616	NM_000051.3	1627	caG/caC						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0005941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	452	638	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40738998	40738998	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	486	465	0	ENST00000373198.4:c.3286G>T	p.Ala1096Ser	p.A1096S	ENST00000373198	NM_133170.3	1096	Gct/Tct						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174574	112174574	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	82	597	4	ENST00000257430.4:c.3283C>T	p.Gln1095Ter	p.Q1095*	ENST00000257430	NM_000038.5	1095	Cag/Tag						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139399161	139399161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	15	392	0	ENST00000277541.6:c.4982G>A	p.Arg1661Gln	p.R1661Q	ENST00000277541	NM_017617.3	1661	cGg/cAg						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70333069	70333069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	28	626	0	ENST00000373644.4:c.974C>G	p.Ser325Cys	p.S325C	ENST00000373644	NM_030625.2	325	tCt/tGt						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67473625	67473625	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	204	575	0	ENST00000327367.4:c.705C>G	p.Ile235Met	p.I235M	ENST00000327367	NM_005902.3	235	atC/atG						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	10032306	10032306	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	78	396	0	ENST00000330684.3:c.517G>C	p.Val173Leu	p.V173L	ENST00000330684	NM_001134407.1	173	Gtg/Ctg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48593519	48593519	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	120	383	0	ENST00000342988.3:c.1270G>C	p.Asp424His	p.D424H	ENST00000342988	NM_005359.5	424	Gat/Cat						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	35	578	0	ENST00000269305.4:c.645T>G	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agG						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	62	519	0	ENST00000269305.4:c.794T>C	p.Leu265Pro	p.L265P	ENST00000269305	NM_001126112.2	265	cTg/cCg						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215610547	215610547	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	50	512	0	ENST00000260947.4:c.1709T>G	p.Leu570Arg	p.L570R	ENST00000260947	NM_000465.2	570	cTt/cGt						NEWRECORD																																																																									
BCL6	604	MSKCC	GRCh37	3	187449516	187449516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	90	356	0	ENST00000232014.4:c.364C>T	p.Arg122Trp	p.R122W	ENST00000232014	NM_001130845.1	122	Cgg/Tgg						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061211	38061240	+	inframe_deletion	In_Frame_Del	DEL	AGTAGCAGCCGTTCTCGAACATGTTGCCGG	AGTAGCAGCCGTTCTCGAACATGTTGCCGG	-			P-0007965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	28	342	0	ENST00000250448.2:c.749_778del	p.Ser250_Tyr259del	p.S250_Y259del	ENST00000250448	NM_004496.3	250	tCCGGCAACATGTTCGAGAACGGCTGCTACTtg/ttg						NEWRECORD																																																																									
EIF1AX	1964	MSKCC	GRCh37	X	20156719	20156719	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	112	291	0	ENST00000379607.5:c.38G>C	p.Arg13Pro	p.R13P	ENST00000379607	NM_001412.3	13	cGc/cCc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579331	7579331	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	258	457	0	ENST00000269305.4:c.356C>G	p.Ala119Gly	p.A119G	ENST00000269305	NM_001126112.2	119	gCc/gGc						NEWRECORD																																																																									
DCUN1D1	54165	MSKCC	GRCh37	3	182681838	182681838	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0009989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	289	412	0	ENST00000292782.4:c.221-1G>T		p.X74_splice	ENST00000292782	NM_020640.2	74							NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108216555	108216555	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	399	703	1	ENST00000278616.4:c.8504G>T	p.Cys2835Phe	p.C2835F	ENST00000278616	NM_000051.3	2835	tGc/tTc						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37871752	37871752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1131	71	542	0	ENST00000269571.5:c.1276C>A	p.Gln426Lys	p.Q426K	ENST00000269571		426	Cag/Aag						NEWRECORD																																																																									
GPS2	2874	MSKCC	GRCh37	17	7217873	7217873	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	605	855	0	ENST00000380728.2:c.138del	p.Glu47AsnfsTer16	p.E47Nfs*16	ENST00000380728		46	gaA/ga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0004739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	125	605	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11199431	11199431	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			987	127	628	0	ENST00000361445.4:c.5060A>T	p.His1687Leu	p.H1687L	ENST00000361445	NM_004958.3	1687	cAt/cTt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0004739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	271	519	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117630048	117630048	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	26	598	0	ENST00000368508.3:c.6478C>T	p.Gln2160Ter	p.Q2160*	ENST00000368508	NM_002944.2	2160	Cag/Tag						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65344788	65344788	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	59	742	0	ENST00000342505.4:c.249G>C	p.Glu83Asp	p.E83D	ENST00000342505	NM_002227.2	83	gaG/gaC						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86564794	86564794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	81	795	1	ENST00000274376.6:c.526C>T	p.Pro176Ser	p.P176S	ENST00000274376	NM_002890.2	176	Cct/Tct						NEWRECORD																																																																									
FGFR4	2264	MSKCC	GRCh37	5	176520253	176520253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	77	403	0	ENST00000292408.4:c.1172G>A	p.Arg391Gln	p.R391Q	ENST00000292408	NM_213647.1	391	cGa/cAa						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118362561	118362561	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	59	584	0	ENST00000534358.1:c.4922A>C	p.Lys1641Thr	p.K1641T	ENST00000534358	NM_005933.3	1641	aAa/aCa						NEWRECORD																																																																									
MAX	4149	MSKCC	GRCh37	14	65544706	65544706	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	90	594	0	ENST00000358664.4:c.220A>G	p.Met74Val	p.M74V	ENST00000358664	NM_002382.4	74	Atg/Gtg						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	41988919	41988919	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	68	887	0	ENST00000219905.7:c.1711G>C	p.Asp571His	p.D571H	ENST00000219905	NM_001164273.1	571	Gat/Cat						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857925	9857925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	33	516	1	ENST00000330684.3:c.3476G>A	p.Arg1159His	p.R1159H	ENST00000330684	NM_001134407.1	1159	cGc/cAc						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72993389	72993389	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0005832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	55	852	0	ENST00000268489.5:c.656C>G	p.Ser219Ter	p.S219*	ENST00000268489	NM_006885.3	219	tCa/tGa						NEWRECORD																																																																									
CD79A	973	MSKCC	GRCh37	19	42383106	42383106	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	61	725	0	ENST00000221972.3:c.126G>C	p.Leu42Phe	p.L42F	ENST00000221972	NM_021601.3	42	ttG/ttC						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39931616	39931616	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	23	561	0	ENST00000378444.4:c.2983C>A	p.Gln995Lys	p.Q995K	ENST00000378444	NM_001123385.1	995	Caa/Aaa						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76944328	76944328	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	16	715	0	ENST00000373344.5:c.577C>T	p.Gln193Ter	p.Q193*	ENST00000373344	NM_000489.3	193	Caa/Taa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	58	335	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101907053	101907053	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	56	318	0	ENST00000374994.4:c.1013A>T	p.Asn338Ile	p.N338I	ENST00000374994	NM_004612.2	338	aAt/aTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	78	396	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0008429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	79	280	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa						NEWRECORD																																																																									
ERCC3	2071	MSKCC	GRCh37	2	128046958	128046958	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	79	488	3	ENST00000285398.2:c.777A>T	p.Glu259Asp	p.E259D	ENST00000285398	NM_000122.1	259	gaA/gaT						NEWRECORD																																																																									
HNF1A	6927	MSKCC	GRCh37	12	121431427	121431427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	161	383	0	ENST00000257555.6:c.631C>A	p.Gln211Lys	p.Q211K	ENST00000257555		211	Cag/Aag						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32929285	32929285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	257	858	0	ENST00000380152.3:c.7295G>A	p.Arg2432Lys	p.R2432K	ENST00000380152		2432	aGa/aAa						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9858728	9858728	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	67	450	0	ENST00000330684.3:c.2673G>T	p.Gln891His	p.Q891H	ENST00000330684	NM_001134407.1	891	caG/caT						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5222852	5222852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	90	189	0	ENST00000357368.4:c.2951C>T	p.Pro984Leu	p.P984L	ENST00000357368	NM_002850.3	984	cCg/cTg						NEWRECORD																																																																									
PLK2	10769	MSKCC	GRCh37	5	57751902	57751902	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	47	398	0	ENST00000274289.3:c.1335T>G	p.Ile445Met	p.I445M	ENST00000274289	NM_006622.3	445	atT/atG						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579541	7579541	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	39	392	1	ENST00000269305.4:c.146A>T	p.Asp49Val	p.D49V	ENST00000269305	NM_001126112.2	49	gAt/gTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	319	396	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	60	226	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	112	562	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577599	7577599	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	52	309	0	ENST00000269305.4:c.682G>C	p.Asp228His	p.D228H	ENST00000269305	NM_001126112.2	228	Gac/Cac						NEWRECORD																																																																									
SUFU	51684	MSKCC	GRCh37	10	104263941	104263941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	17	124	0	ENST00000369902.3:c.32G>A	p.Gly11Asp	p.G11D	ENST00000369902	NM_016169.3	11	gGc/gAc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48584497	48584497	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0009161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	93	213	0	ENST00000342988.3:c.670C>T	p.Gln224Ter	p.Q224*	ENST00000342988	NM_005359.5	224	Cag/Tag						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29445400	29445400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	96	485	1	ENST00000389048.3:c.3433C>A	p.Leu1145Met	p.L1145M	ENST00000389048	NM_004304.4	1145	Ctg/Atg						NEWRECORD																																																																									
XPO1	7514	MSKCC	GRCh37	2	61722634	61722634	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	145	420	0	ENST00000401558.2:c.1003C>G	p.Gln335Glu	p.Q335E	ENST00000401558	NM_003400.3	335	Caa/Gaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579545	7579545	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	77	359	0	ENST00000269305.4:c.142G>C	p.Asp48His	p.D48H	ENST00000269305	NM_001126112.2	48	Gac/Cac						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63534390	63534390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	118	398	0	ENST00000307078.5:c.1131G>C	p.Arg377Ser	p.R377S	ENST00000307078	NM_004655.3	377	agG/agC						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8500764	8500765	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0009161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	142	295	0	ENST00000356435.5:c.2117_2118delinsAA	p.Thr706Lys	p.T706K	ENST00000356435		706	aCC/aAA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0006766-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	294	515	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307							NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116485	112116485	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0006766-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	297	370	0	ENST00000257430.4:c.532-2A>T		p.X178_splice	ENST00000257430	NM_000038.5	178							NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66765159	66765185	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCA	-			P-0006766-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	58	364	0	ENST00000374690.3:c.213_239del	p.Gln72_Gln80del	p.Q72_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	278	541	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	212	424	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126							NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974721	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	123	379	0	ENST00000304494.5:c.106del	p.Ala36ArgfsTer17	p.A36Rfs*17	ENST00000304494	NM_000077.4	36	Gcg/cg						NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056402	26056402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	188	331	0	ENST00000343677.2:c.255G>C	p.Lys85Asn	p.K85N	ENST00000343677	NM_005319.3	85	aaG/aaC						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53230752	53230752	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	363	357	0	ENST00000375401.3:c.2041C>T	p.Arg681Ter	p.R681*	ENST00000375401	NM_004187.3	681	Cga/Tga						NEWRECORD																																																																									
NEGR1	257194	MSKCC	GRCh37	1	72400827	72400827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	271	957	0	ENST00000357731.5:c.344C>A	p.Pro115Gln	p.P115Q	ENST00000357731	NM_173808.2	115	cCa/cAa						NEWRECORD																																																																									
BCL2L11	10018	MSKCC	GRCh37	2	111881518	111881518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	243	472	0	ENST00000393256.3:c.196C>T	p.Pro66Ser	p.P66S	ENST00000393256	NM_006538.4	66	Cca/Tca						NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209113307	209113307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	197	565	0	ENST00000345146.2:c.200A>G	p.His67Arg	p.H67R	ENST00000345146	NM_005896.2	67	cAt/cGt						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180056291	180056291	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199942873		P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	305	695	0	ENST00000261937.6:c.953G>A	p.Arg318Gln	p.R318Q	ENST00000261937	NM_182925.4	318	cGa/cAa						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106526712	106526712	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	148	336	0	ENST00000359195.3:c.3005C>A	p.Thr1002Lys	p.T1002K	ENST00000359195	NM_002649.2	1002	aCa/aAa						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116371821	116371821	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	155	543	0	ENST00000397752.3:c.1300T>A	p.Phe434Ile	p.F434I	ENST00000397752	NM_000245.2	434	Ttc/Atc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151945093	151945093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	54	376	0	ENST00000262189.6:c.2426G>T	p.Gly809Val	p.G809V	ENST00000262189	NM_170606.2	809	gGa/gTa						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37883981	37883981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	204	447	0	ENST00000269571.5:c.3452C>T	p.Ser1151Leu	p.S1151L	ENST00000269571		1151	tCg/tTg						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47038563	47038563	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	288	397	0	ENST00000329236.7:c.493+1G>C		p.X165_splice	ENST00000329236	NM_001204466.1	165							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	57	374	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0006828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	301	439	1	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30732960	30732960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	268	381	0	ENST00000359013.4:c.1648C>A	p.Pro550Thr	p.P550T	ENST00000359013	NM_001024847.2	550	Cca/Aca						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17945494	17945494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	81	464	0	ENST00000458235.1:c.2236G>C	p.Ala746Pro	p.A746P	ENST00000458235	NM_000215.3	746	Gcc/Ccc						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56436050	56436050	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	255	401	0	ENST00000407977.2:c.1087del	p.Arg363GlyfsTer56	p.R363Gfs*56	ENST00000407977		363	Cgg/gg						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139396746	139396746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	39	139	0	ENST00000277541.6:c.5362G>A	p.Gly1788Ser	p.G1788S	ENST00000277541	NM_017617.3	1788	Ggc/Agc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0009114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	79	427	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81944243	81944243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	88	443	0	ENST00000359376.3:c.1852C>T	p.Arg618Cys	p.R618C	ENST00000359376	NM_002661.3	618	Cgc/Tgc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175351	112175364	+	frameshift_variant	Frame_Shift_Del	DEL	TTTTCTTCAGGAGC	TTTTCTTCAGGAGC	-			P-0009114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	43	168	0	ENST00000257430.4:c.4060_4073del	p.Phe1354GlufsTer16	p.F1354Efs*16	ENST00000257430	NM_000038.5	1354	TTTTCTTCAGGAGCg/g						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112170677	112170679	+	stop_gained	Nonsense_Mutation	ONP	CTT	CTT	ATA			P-0009114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	57	282	0	ENST00000257430.4:c.1773_1775delinsATA	p.Leu592Ter	p.L592*	ENST00000257430	NM_000038.5	591	gcCTTa/gcATAa						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0009261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	1397	403	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	141	275	0	ENST00000269305.4:c.380C>A	p.Ser127Tyr	p.S127Y	ENST00000269305	NM_001126112.2	127	tCc/tAc						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37866662	37866662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	1412	404	0	ENST00000269571.5:c.829G>T	p.Asp277Tyr	p.D277Y	ENST00000269571		277	Gac/Tac						NEWRECORD																																																																									
SDHA	6389	MSKCC	GRCh37	5	224496	224496	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	28	102	0	ENST00000264932.6:c.172G>C	p.Val58Leu	p.V58L	ENST00000264932	NM_004168.2	58	Gtg/Ctg						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38967262	38967262	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0009261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	70	362	0	ENST00000357387.3:c.1218+1G>T		p.X406_splice	ENST00000357387	NM_152756.3	406							NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	162864368	162864368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	152	326	0	ENST00000366898.1:c.145G>A	p.Glu49Lys	p.E49K	ENST00000366898	NM_004562.2	49	Gag/Aag						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140534564	140534564	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	91	356	0	ENST00000288602.6:c.349A>T	p.Met117Leu	p.M117L	ENST00000288602	NM_004333.4	117	Atg/Ttg						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81953228	81953228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1132	145	531	3	ENST00000359376.3:c.2194C>T	p.Arg732Cys	p.R732C	ENST00000359376	NM_002661.3	732	Cgc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0007632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	133	491	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	53	339	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	47	396	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49446027	49446027	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	70	468	0	ENST00000301067.7:c.1439del	p.Pro480LeufsTer450	p.P480Lfs*450	ENST00000301067	NM_003482.3	480	cCt/ct						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131973772	131973772	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0007632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	17	328	0	ENST00000265335.6:c.3476-1G>A		p.X1159_splice	ENST00000265335		1159							NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55221846	55221846	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0007632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	130	524	0	ENST00000275493.2:c.889+1G>A		p.X297_splice	ENST00000275493	NM_005228.3	297							NEWRECORD																																																																									
PAX5	5079	MSKCC	GRCh37	9	36923394	36923394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	90	379	2	ENST00000358127.4:c.868G>A	p.Gly290Arg	p.G290R	ENST00000358127	NM_001280556.1	290	Ggg/Agg						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41265579	41266277	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTCATTAAATCTTTAGTTACTGAATTGGGGCTCTGCTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAA	GTCATTAAATCTTTAGTTACTGAATTGGGGCTCTGCTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAA	-			P-0007632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	58	399	0	ENST00000349496.5:c.13+11_241+37del		p.X5_splice	ENST00000349496	NM_001904.3	5							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009609-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	30	433	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	276	446	15	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg						NEWRECORD																																																																									
FANCC	2176	MSKCC	GRCh37	9	98003010	98003010	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	25	585	0	ENST00000289081.3:c.266T>A	p.Ile89Asn	p.I89N	ENST00000289081	NM_000136.2	89	aTt/aAt						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3900866	3900881	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCCTCGTAGAAGCT	CCTCCTCGTAGAAGCT	-			P-0007750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	230	526	8	ENST00000262367.5:c.215_230del	p.Glu72AlafsTer10	p.E72Afs*10	ENST00000262367	NM_004380.2	72	gAGCTTCTACGAGGAGGc/gc						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64577408	64577408	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	161	413	0	ENST00000337652.1:c.174del	p.Glu60SerfsTer59	p.E60Sfs*59	ENST00000337652	NM_130803.2	58	gtT/gt						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25469632	25469632	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	77	419	1	ENST00000264709.3:c.1136G>T	p.Arg379Leu	p.R379L	ENST00000264709	NM_175629.2	379	cGc/cTc						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0005026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	68	256	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	36	243	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8331733	8331733	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	65	316	0	ENST00000356435.5:c.5383G>T	p.Gly1795Cys	p.G1795C	ENST00000356435		1795	Ggc/Tgc						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133226280	133226280	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	93	469	0	ENST00000320574.5:c.3778G>T	p.Ala1260Ser	p.A1260S	ENST00000320574	NM_006231.2	1260	Gcc/Tcc						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21557844	21557844	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	80	456	0	ENST00000382592.4:c.2001G>T	p.Met667Ile	p.M667I	ENST00000382592	NM_014572.2	667	atG/atT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	134	569	1	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31016154	31016154	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1269	96	532	1	ENST00000375687.4:c.400G>T	p.Ala134Ser	p.A134S	ENST00000375687	NM_015338.5	134	Gca/Tca						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40790089	40790089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	49	346	0	ENST00000373198.4:c.2642G>T	p.Arg881Leu	p.R881L	ENST00000373198	NM_133170.3	881	cGg/cTg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	273	354	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	156	398	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99170840	99170840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	64	443	0	ENST00000074304.5:c.1469C>T	p.Ser490Leu	p.S490L	ENST00000074304	NM_001134224.1	490	tCg/tTg						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212812230	212812230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	59	377	0	ENST00000342788.4:c.346G>T	p.Ala116Ser	p.A116S	ENST00000342788	NM_005235.2	116	Gcc/Tcc						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5022108	5022108	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	123	441	0	ENST00000381652.3:c.121G>C	p.Val41Leu	p.V41L	ENST00000381652	NM_004972.3	41	Gtg/Ctg						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8341944	8341944	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	97	319	0	ENST00000356435.5:c.4696A>G	p.Ile1566Val	p.I1566V	ENST00000356435		1566	Ata/Gta						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8501045	8501045	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	72	276	0	ENST00000356435.5:c.1837C>A	p.Pro613Thr	p.P613T	ENST00000356435		613	Cct/Act						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100998186	100998186	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	58	324	0	ENST00000325455.5:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000325455	NM_001202474.3	539	cCg/cGg						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2129062	2129062	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	51	360	0	ENST00000219476.3:c.2996G>C	p.Ser999Thr	p.S999T	ENST00000219476	NM_000548.3	999	aGc/aCc						NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45007883	45007919	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAAGATAGTTAAGTGGGGTAAGTCTTACATTCTTTTG	CAAGATAGTTAAGTGGGGTAAGTCTTACATTCTTTTG	-			P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	65	272	0	ENST00000558401.1:c.330_346+20del		p.X110_splice	ENST00000558401	NM_004048.2	110							NEWRECORD																																																																									
MUTYH	4595	MSKCC	GRCh37	1	45796944	45796944	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	62	430	0	ENST00000372115.3:c.1344del	p.Gln449ArgfsTer4	p.Q449Rfs*4	ENST00000372115	NM_001048171.1	448	ggG/gg						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47038773	47038773	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	54	325	0	ENST00000329236.7:c.551del	p.Gly184ValfsTer5	p.G184Vfs*5	ENST00000329236	NM_001204466.1	183	ctG/ct						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857510	9857510	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	28	305	1	ENST00000330684.3:c.3891del	p.Asp1297GlufsTer6	p.D1297Efs*6	ENST00000330684	NM_001134407.1	1297	gaC/ga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	100	404	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0009765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	88	597	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21970927	21970927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	109	513	1	ENST00000304494.5:c.431G>A	p.Arg144His	p.R144H	ENST00000304494	NM_000077.4	144	cGc/cAc						NEWRECORD																																																																									
FGFR4	2264	MSKCC	GRCh37	5	176518049	176518049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	152	632	0	ENST00000292408.4:c.547C>T	p.Arg183Cys	p.R183C	ENST00000292408	NM_213647.1	183	Cgc/Tgc						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37667868	37667868	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	70	522	0	ENST00000447079.4:c.2753A>G	p.Asp918Gly	p.D918G	ENST00000447079	NM_015083.1	918	gAt/gGt						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37649069	37649070	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0005639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	95	534	0	ENST00000447079.4:c.2175_2176del	p.Asp725GlufsTer3	p.D725Efs*3	ENST00000447079	NM_015083.1	725	gAC/g						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0006362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	40	570	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0006362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	61	645	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55953914	55953914	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	46	470	0	ENST00000263923.4:c.3522C>A	p.Asp1174Glu	p.D1174E	ENST00000263923	NM_002253.2	1174	gaC/gaA						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151878863	151878863	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	51	636	1	ENST00000262189.6:c.6082C>T	p.Arg2028Ter	p.R2028*	ENST00000262189	NM_170606.2	2028	Cga/Tga						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118374913	118374913	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	67	876	0	ENST00000534358.1:c.8306A>G	p.His2769Arg	p.H2769R	ENST00000534358	NM_005933.3	2769	cAt/cGt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575091	48575091	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0006362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	51	783	0	ENST00000342988.3:c.285T>G	p.Tyr95Ter	p.Y95*	ENST00000342988	NM_005359.5	95	taT/taG						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7172365	7172365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	76	656	3	ENST00000302850.5:c.1204G>A	p.Ala402Thr	p.A402T	ENST00000302850	NM_000208.2	402	Gct/Act						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11123691	11123691	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	48	653	0	ENST00000344626.4:c.2341A>G	p.Met781Val	p.M781V	ENST00000344626	NM_003072.3	781	Atg/Gtg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0008476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	287	468	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0008476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	232	431	1	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0008476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	384	617	1	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187540406	187540406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	35	224	0	ENST00000441802.2:c.7334G>A	p.Gly2445Glu	p.G2445E	ENST00000441802	NM_005245.3	2445	gGg/gAg						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149515369	149515369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	68	310	1	ENST00000261799.4:c.113C>T	p.Pro38Leu	p.P38L	ENST00000261799	NM_002609.3	38	cCg/cTg						NEWRECORD																																																																									
PPM1D	8493	MSKCC	GRCh37	17	58734200	58734200	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0008476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1675	153	766	0	ENST00000305921.3:c.1258A>T	p.Lys420Ter	p.K420*	ENST00000305921	NM_003620.3	420	Aag/Tag						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220449	1220449	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	100	567	0	ENST00000326873.7:c.542A>C	p.Asn181Thr	p.N181T	ENST00000326873	NM_000455.4	181	aAc/aCc						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7172365	7172365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	229	540	0	ENST00000302850.5:c.1204G>T	p.Ala402Ser	p.A402S	ENST00000302850	NM_000208.2	402	Gct/Tct						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	78	298	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
RYBP	23429	MSKCC	GRCh37	3	72428534	72428534	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	32	238	0	ENST00000477973.2:c.468A>C	p.Gln157Pro	p.Q157P	ENST00000477973	NM_012234.5	157	cAa/cCa						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55140703	55140703	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	49	320	0	ENST00000257290.5:c.1564C>G	p.Arg522Gly	p.R522G	ENST00000257290	NM_006206.4	522	Cgt/Ggt						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81355312	81355312	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	40	423	0	ENST00000222390.5:c.1062C>G	p.Cys354Trp	p.C354W	ENST00000222390	NM_000601.4	354	tgC/tgG						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151856085	151856085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	59	388	0	ENST00000262189.6:c.11533G>A	p.Glu3845Lys	p.E3845K	ENST00000262189	NM_170606.2	3845	Gaa/Aaa						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2111926	2111926	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	75	458	0	ENST00000219476.3:c.1174G>T	p.Glu392Ter	p.E392*	ENST00000219476	NM_000548.3	392	Gag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	156	309	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057520007		P-0006144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	97	542	1	ENST00000269305.4:c.614A>T	p.Tyr205Phe	p.Y205F	ENST00000269305	NM_001126112.2	205	tAt/tTt						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89391151	89391151	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	35	382	0	ENST00000336596.2:c.1217C>G	p.Thr406Ser	p.T406S	ENST00000336596	NM_005233.5	406	aCc/aGc						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971032	21971040	+	inframe_deletion	In_Frame_Del	DEL	GCATCGCGC	GCATCGCGC	-			P-0006144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	42	292	0	ENST00000304494.5:c.318_326del	p.Arg107_Ala109del	p.R107_A109del	ENST00000304494	NM_000077.4	106	gtGCGCGATGCc/gtc						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	185	536	1	ENST00000250448.2:c.655C>T	p.Arg219Cys	p.R219C	ENST00000250448	NM_004496.3	219	Cgc/Tgc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27105997	27105997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	76	227	0	ENST00000324856.7:c.5608C>T	p.Pro1870Ser	p.P1870S	ENST00000324856	NM_006015.4	1870	Cct/Tct						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32168752	32168752	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	170	556	0	ENST00000375023.3:c.4171C>A	p.Arg1391Ser	p.R1391S	ENST00000375023	NM_004557.3	1391	Cgc/Agc						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32169083	32169083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	150	445	1	ENST00000375023.3:c.3950G>A	p.Arg1317Gln	p.R1317Q	ENST00000375023	NM_004557.3	1317	cGg/cAg						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98209203	98209203	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	44	285	0	ENST00000331920.6:c.4335C>G	p.Ser1445Arg	p.S1445R	ENST00000331920	NM_000264.3	1445	agC/agG						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9934581	9934581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	184	511	0	ENST00000330684.3:c.1574C>T	p.Ser525Phe	p.S525F	ENST00000330684	NM_001134407.1	525	tCt/tTt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610522	10610522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	139	488	0	ENST00000171111.5:c.188C>T	p.Ala63Val	p.A63V	ENST00000171111	NM_203500.1	63	gCc/gTc						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32915083	32915084	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0006461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1035	287	788	0	ENST00000380152.3:c.6591_6592delTG	p.Glu2198AsnfsTer4	p.E2198Nfs*4	ENST00000380152		2197	acTGaa/acaa						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061010	38061021	+	inframe_deletion	In_Frame_Del	DEL	CGGGGGCCGGCG	CGGGGGCCGGCG	-			P-0006461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	58	179	0	ENST00000250448.2:c.968_979del	p.Ala323_Pro326del	p.A323_P326del	ENST00000250448	NM_004496.3	323	gCGCCGGCCCCCGgg/ggg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0006262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	27	304	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187510333	187510333	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	25	372	0	ENST00000441802.2:c.13180C>G	p.Leu4394Val	p.L4394V	ENST00000441802	NM_005245.3	4394	Ctg/Gtg						NEWRECORD																																																																									
KLF4	9314	MSKCC	GRCh37	9	110250442	110250444	+	inframe_deletion	In_Frame_Del	DEL	CCG	CCG	-			P-0006262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	30	426	0	ENST00000374672.4:c.231_233delCGG	p.Gly78del	p.G78del	ENST00000374672	NM_004235.4	77	ggCGGa/gga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574014	7574014	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	82	673	0	ENST00000269305.4:c.1013del	p.Phe338SerfsTer7	p.F338Sfs*7	ENST00000269305	NM_001126112.2	338	tTc/tc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0005571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			33	74	580	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	86	393	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971194	21971194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	54	218	1	ENST00000304494.5:c.164G>T	p.Gly55Val	p.G55V	ENST00000304494	NM_000077.4	55	gGc/gTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057520005		P-0008874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	96	732	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10597488	10597488	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	59	506	0	ENST00000171111.5:c.1715A>G	p.Tyr572Cys	p.Y572C	ENST00000171111	NM_203500.1	572	tAt/tGt						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212288924	212288924	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	93	586	0	ENST00000342788.4:c.2822A>T	p.Gln941Leu	p.Q941L	ENST00000342788	NM_005235.2	941	cAg/cTg						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52643705	52643705	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	41	421	0	ENST00000394830.3:c.2191A>T	p.Met731Leu	p.M731L	ENST00000394830	NM_018313.4	731	Atg/Ttg						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52643715	52643715	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	43	439	0	ENST00000394830.3:c.2181C>G	p.Asp727Glu	p.D727E	ENST00000394830	NM_018313.4	727	gaC/gaG						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189586470	189586470	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	88	395	0	ENST00000264731.3:c.1094C>A	p.Ser365Ter	p.S365*	ENST00000264731	NM_003722.4	365	tCg/tAg						NEWRECORD																																																																									
PMS2	5395	MSKCC	GRCh37	7	6043656	6043656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	38	432	0	ENST00000265849.7:c.197T>C	p.Ile66Thr	p.I66T	ENST00000265849	NM_000535.5	66	aTt/aCt						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106509312	106509312	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	95	586	2	ENST00000359195.3:c.1306G>T	p.Gly436Cys	p.G436C	ENST00000359195	NM_002649.2	436	Ggt/Tgt						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31376690	31376690	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	89	478	0	ENST00000328111.2:c.685G>T	p.Val229Leu	p.V229L	ENST00000328111	NM_006892.3	229	Gtg/Ttg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221264	1221267	+	frameshift_variant	Frame_Shift_Del	DEL	TTGT	TTGT	-			P-0008874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	44	776	0	ENST00000326873.7:c.790_793del	p.Phe264ArgfsTer22	p.F264Rfs*22	ENST00000326873	NM_000455.4	263	TTGTtt/tt						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106515225	106515226	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0008874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	65	494	0	ENST00000359195.3:c.2368_2369delinsTT	p.Gly790Leu	p.G790L	ENST00000359195	NM_002649.2	790	GGa/TTa						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0007619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	190	311	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0007619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	166	204	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220371	1220371	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0007619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	184	241	0	ENST00000326873.7:c.465-1G>T		p.X155_splice	ENST00000326873	NM_000455.4	155							NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25471091	25471091	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	117	285	0	ENST00000264709.3:c.670A>G	p.Met224Val	p.M224V	ENST00000264709	NM_175629.2	224	Atg/Gtg						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29451773	29451773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	114	299	0	ENST00000389048.3:c.2792G>T	p.Gly931Val	p.G931V	ENST00000389048	NM_004304.4	931	gGt/gTt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173893	112173893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	104	210	0	ENST00000257430.4:c.2602G>A	p.Glu868Lys	p.E868K	ENST00000257430	NM_000038.5	868	Gaa/Aaa						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508350	106508350	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	24	82	0	ENST00000359195.3:c.344T>G	p.Val115Gly	p.V115G	ENST00000359195	NM_002649.2	115	gTg/gGg						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89347239	89347239	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	133	349	0	ENST00000301030.4:c.5711A>G	p.Glu1904Gly	p.E1904G	ENST00000301030	NM_001256183.1	1904	gAa/gGa						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602647	10602647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	154	266	0	ENST00000171111.5:c.931C>T	p.His311Tyr	p.H311Y	ENST00000171111	NM_203500.1	311	Cac/Tac						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41100988	41100988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	77	195	0	ENST00000373198.4:c.1368G>A	p.Met456Ile	p.M456I	ENST00000373198	NM_133170.3	456	atG/atA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519975		P-0007912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	172	438	0	ENST00000269305.4:c.403T>C	p.Cys135Arg	p.C135R	ENST00000269305	NM_001126112.2	135	Tgc/Cgc						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67457264	67457264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	151	363	1	ENST00000327367.4:c.238C>T	p.Arg80Trp	p.R80W	ENST00000327367	NM_005902.3	80	Cgg/Tgg						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115109987	115109987	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	114	376	0	ENST00000257566.3:c.1891C>G	p.Leu631Val	p.L631V	ENST00000257566	NM_016569.3	631	Ctg/Gtg						NEWRECORD																																																																									
FGFR2	2263	MSKCC	GRCh37	10	123298118	123298118	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	102	556	0	ENST00000358487.5:c.736C>A	p.Leu246Met	p.L246M	ENST00000358487	NM_000141.4	246	Ctg/Atg						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32900269	32900269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	212	479	1	ENST00000380152.3:c.457C>A	p.Pro153Thr	p.P153T	ENST00000380152		153	Cca/Aca						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95583972	95583972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	86	377	0	ENST00000343455.3:c.1496G>A	p.Arg499Lys	p.R499K	ENST00000343455	NM_177438.2	499	aGa/aAa						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5229584	5229584	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	21	169	0	ENST00000357368.4:c.2267A>G	p.Tyr756Cys	p.Y756C	ENST00000357368	NM_002850.3	756	tAc/tGc						NEWRECORD																																																																									
CASP8	841	MSKCC	GRCh37	2	202149995	202149995	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	204	539	2	ENST00000358485.4:c.1436G>A	p.Trp479Ter	p.W479*	ENST00000358485	NM_001080125.1	479	tGg/tAg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	105	573	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578188	7578188	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1043	214	688	0	ENST00000269305.4:c.661G>T	p.Glu221Ter	p.E221*	ENST00000269305	NM_001126112.2	221	Gag/Tag						NEWRECORD																																																																									
TCF3	6929	MSKCC	GRCh37	19	1632035	1632035	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0009827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	210	755	1	ENST00000344749.5:c.298+2T>C		p.X100_splice	ENST00000344749	NM_001136139.2	100							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0009466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	231	434	2	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602290	10602290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	143	291	1	ENST00000171111.5:c.1288G>T	p.Gly430Cys	p.G430C	ENST00000171111	NM_203500.1	430	Ggc/Tgc						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49420049	49420049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1240	186	413	0	ENST00000301067.7:c.15700G>A	p.Glu5234Lys	p.E5234K	ENST00000301067	NM_003482.3	5234	Gag/Aag						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023895	27023895	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	35	135	0	ENST00000324856.7:c.1001C>G	p.Ser334Trp	p.S334W	ENST00000324856	NM_006015.4	334	tCg/tGg						NEWRECORD																																																																									
ID3	3399	MSKCC	GRCh37	1	23885466	23885466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1525	123	487	0	ENST00000374561.5:c.345G>T	p.Arg115Ser	p.R115S	ENST00000374561	NM_002167.4	115	agG/agT						NEWRECORD																																																																									
FGF3	2248	MSKCC	GRCh37	11	69631122	69631122	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	230	476	0	ENST00000334134.2:c.290T>A	p.Leu97Gln	p.L97Q	ENST00000334134	NM_005247.2	97	cTg/cAg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49443689	49443689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	184	357	0	ENST00000301067.7:c.3682G>T	p.Gly1228Cys	p.G1228C	ENST00000301067	NM_003482.3	1228	Ggc/Tgc						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73352337	73352337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1446	237	473	0	ENST00000377767.4:c.568C>T	p.Pro190Ser	p.P190S	ENST00000377767	NM_014953.3	190	Cca/Tca						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207058	1207069	+	inframe_deletion	In_Frame_Del	DEL	ACCTGATGGGGG	ACCTGATGGGGG	-			P-0009466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	116	330	0	ENST00000326873.7:c.151_162del	p.Met51_Leu54del	p.M51_L54del	ENST00000326873	NM_000455.4	49	tACCTGATGGGGGac/tac						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	236	327	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936083	178936083	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	122	181	0	ENST00000263967.3:c.1625A>C	p.Glu542Ala	p.E542A	ENST00000263967	NM_006218.2	542	gAa/gCa						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180056000	180056000	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	47	456	0	ENST00000261937.6:c.986-1G>T		p.X329_splice	ENST00000261937	NM_182925.4	329							NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16075288	16075288	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	90	305	0	ENST00000268712.3:c.264T>G	p.Ser88Arg	p.S88R	ENST00000268712	NM_006311.3	88	agT/agG						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	57	322	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89815102	89815102	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	93	352	0	ENST00000389301.3:c.3313T>A	p.Cys1105Ser	p.C1105S	ENST00000389301	NM_000135.2	1105	Tgc/Agc						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55127566	55127566	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0007532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	49	189	0	ENST00000257290.5:c.354C>G	p.Tyr118Ter	p.Y118*	ENST00000257290	NM_006206.4	118	taC/taG						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55372205	55372205	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	17	113	0	ENST00000297316.4:c.895G>T	p.Ala299Ser	p.A299S	ENST00000297316	NM_022454.3	299	Gcg/Tcg						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98241298	98241298	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1040	106	404	0	ENST00000331920.6:c.1199A>T	p.Gln400Leu	p.Q400L	ENST00000331920	NM_000264.3	400	cAg/cTg						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47045016	47045016	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	53	367	0	ENST00000329236.7:c.2108C>A	p.Ser703Ter	p.S703*	ENST00000329236	NM_001204466.1	703	tCa/tAa						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47044554	47044554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	84	395	0	ENST00000329236.7:c.1818del	p.Arg606SerfsTer20	p.R606Sfs*20	ENST00000329236	NM_001204466.1	606	aGg/ag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0004714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	186	356	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	78	270	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156851396	156851396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	55	298	1	ENST00000524377.1:c.2353G>A	p.Ala785Thr	p.A785T	ENST00000524377	NM_002529.3	785	Gcc/Acc						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89462324	89462324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	40	299	0	ENST00000336596.2:c.1796C>A	p.Pro599Gln	p.P599Q	ENST00000336596	NM_005233.5	599	cCa/cAa						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2979502	2979502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	134	331	0	ENST00000396946.4:c.745C>A	p.Gln249Lys	p.Q249K	ENST00000396946	NM_032415.4	249	Cag/Aag						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128845134	128845134	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	151	363	0	ENST00000249373.3:c.628G>T	p.Val210Leu	p.V210L	ENST00000249373	NM_005631.4	210	Gtg/Ttg						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18491401	18491401	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	143	301	0	ENST00000266497.5:c.1314C>G	p.Cys438Trp	p.C438W	ENST00000266497		438	tgC/tgG						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73337680	73337680	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	138	302	0	ENST00000377767.4:c.2036A>C	p.His679Pro	p.H679P	ENST00000377767	NM_014953.3	679	cAt/cCt						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3817756	3817756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	152	404	0	ENST00000262367.5:c.3215C>T	p.Ser1072Phe	p.S1072F	ENST00000262367	NM_004380.2	1072	tCt/tTt						NEWRECORD																																																																									
RAD51D	5892	MSKCC	GRCh37	17	33430537	33430537	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	63	355	0	ENST00000335858.7:c.267G>T	p.Lys89Asn	p.K89N	ENST00000335858	NM_133629.2	89	aaG/aaT						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40738973	40738973	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	43	259	0	ENST00000373198.4:c.3311G>T	p.Ser1104Ile	p.S1104I	ENST00000373198	NM_133170.3	1104	aGt/aTt						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32180958	32180959	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0004714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	94	315	0	ENST00000375023.3:c.2391_2392delinsAA	p.Phe797_Gln798delinsLeuLys	p.F797_Q798delinsLK	ENST00000375023	NM_004557.3	797	ttCCag/ttAAag						NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209103952	209103952	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	93	361	0	ENST00000345146.2:c.997A>G	p.Ile333Val	p.I333V	ENST00000345146	NM_005896.2	333	Att/Gtt						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32169256	32169256	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	123	391	0	ENST00000375023.3:c.3777C>A	p.Cys1259Ter	p.C1259*	ENST00000375023	NM_004557.3	1259	tgC/tgA						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81334768	81334768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	175	515	0	ENST00000222390.5:c.1948G>A	p.Val650Met	p.V650M	ENST00000222390	NM_000601.4	650	Gtg/Atg						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55370870	55370870	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	219	370	1	ENST00000297316.4:c.172G>T	p.Ala58Ser	p.A58S	ENST00000297316	NM_022454.3	58	Gcc/Tcc						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8097835	8097835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	51	422	1	ENST00000346208.3:c.217C>T	p.Gln73Ter	p.Q73*	ENST00000346208		73	Cag/Tag						NEWRECORD																																																																									
PAK1	5058	MSKCC	GRCh37	11	77090304	77090304	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1118	311	452	0	ENST00000356341.3:c.421A>G	p.Lys141Glu	p.K141E	ENST00000356341	NM_002576.4	141	Aaa/Gaa						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108160372	108160372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	68	376	0	ENST00000278616.4:c.4280C>T	p.Ala1427Val	p.A1427V	ENST00000278616	NM_000051.3	1427	gCt/gTt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49426453	49426453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1284	88	596	1	ENST00000301067.7:c.12035C>T	p.Pro4012Leu	p.P4012L	ENST00000301067	NM_003482.3	4012	cCt/cTt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49434604	49434604	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	58	396	0	ENST00000301067.7:c.6949G>C	p.Gly2317Arg	p.G2317R	ENST00000301067	NM_003482.3	2317	Ggt/Cgt						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3779226	3779226	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	70	268	0	ENST00000262367.5:c.5822A>T	p.Gln1941Leu	p.Q1941L	ENST00000262367	NM_004380.2	1941	cAg/cTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578440	7578440	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	120	470	0	ENST00000269305.4:c.490A>T	p.Lys164Ter	p.K164*	ENST00000269305	NM_001126112.2	164	Aag/Tag						NEWRECORD																																																																									
RAD51D	5892	MSKCC	GRCh37	17	33446604	33446604	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1088	166	490	2	ENST00000335858.7:c.29C>A	p.Pro10His	p.P10H	ENST00000335858	NM_133629.2	10	cCt/cAt						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59885864	59885864	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	181	451	1	ENST00000259008.2:c.882A>T	p.Arg294Ser	p.R294S	ENST00000259008	NM_032043.2	294	agA/agT						NEWRECORD																																																																									
MALT1	10892	MSKCC	GRCh37	18	56409159	56409159	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1189	84	604	0	ENST00000348428.3:c.1666G>C	p.Glu556Gln	p.E556Q	ENST00000348428	NM_006785.3	556	Gag/Cag						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40944546	40944546	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1188	77	470	0	ENST00000373198.4:c.1956T>A	p.Tyr652Ter	p.Y652*	ENST00000373198	NM_133170.3	652	taT/taA						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41543885	41543885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1152	70	534	0	ENST00000263253.7:c.2176G>T	p.Val726Leu	p.V726L	ENST00000263253	NM_001429.3	726	Gta/Tta						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39922919	39922919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	93	539	0	ENST00000378444.4:c.3789G>T	p.Glu1263Asp	p.E1263D	ENST00000378444	NM_001123385.1	1263	gaG/gaT						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47041261	47041261	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	79	536	0	ENST00000329236.7:c.1455G>T	p.Gln485His	p.Q485H	ENST00000329236	NM_001204466.1	485	caG/caT						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63411363	63411363	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	60	541	0	ENST00000330258.3:c.1804G>T	p.Glu602Ter	p.E602*	ENST00000330258	NM_152424.3	602	Gag/Tag						NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100615565	100615565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1141	75	554	0	ENST00000308731.7:c.767A>G	p.Asp256Gly	p.D256G	ENST00000308731	NM_000061.2	256	gAt/gGt						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8460533	8460533	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	81	461	0	ENST00000356435.5:c.3753del	p.Ser1252GlnfsTer16	p.S1252Qfs*16	ENST00000356435		1251	gtG/gt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	167	554	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106509049	106509049	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1003	142	618	1	ENST00000359195.3:c.1043G>T	p.Ser348Ile	p.S348I	ENST00000359195	NM_002649.2	348	aGt/aTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7573996	7573996	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1121	219	922	0	ENST00000269305.4:c.1031T>A	p.Leu344Gln	p.L344Q	ENST00000269305	NM_001126112.2	344	cTg/cAg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	41	271	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	20	179	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66467646	66467646	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	41	252	1	ENST00000273854.3:c.623del	p.Lys208ArgfsTer60	p.K208Rfs*60	ENST00000273854	NM_004439.5	208	aAg/ag						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	47	275	0	ENST00000342988.3:c.1081C>A	p.Arg361Ser	p.R361S	ENST00000342988	NM_005359.5	361	Cgc/Agc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0005016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	64	198	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa						NEWRECORD																																																																									
FYN	2534	MSKCC	GRCh37	6	112029177	112029177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	53	482	0	ENST00000368678.4:c.391G>A	p.Gly131Ser	p.G131S	ENST00000368678		131	Ggt/Agt						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70120013	70120013	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	16	52	1	ENST00000245479.2:c.1015C>T	p.Gln339Ter	p.Q339*	ENST00000245479	NM_000346.3	339	Cag/Tag						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45368203	45368203	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	55	278	0	ENST00000262160.6:c.1399del	p.Ser467HisfsTer13	p.S467Hfs*13	ENST00000262160	NM_005901.5	467	Tca/ca						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	121	310	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89478256	89478256	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0006747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	134	306	0	ENST00000336596.2:c.2075G>T	p.Ser692Ile	p.S692I	ENST00000336596	NM_005233.5	692	aGt/aTt						NEWRECORD																																																																									
PHOX2B	8929	MSKCC	GRCh37	4	41748152	41748152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	44	253	0	ENST00000226382.2:c.617C>A	p.Pro206His	p.P206H	ENST00000226382	NM_003924.3	206	cCc/cAc						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57864204	57864204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	110	538	0	ENST00000228682.2:c.1681C>A	p.Leu561Met	p.L561M	ENST00000228682	NM_005269.2	561	Ctg/Atg						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9943818	9943818	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	36	184	0	ENST00000330684.3:c.1123G>T	p.Val375Leu	p.V375L	ENST00000330684	NM_001134407.1	375	Gtg/Ttg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	87	375	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49446054	49446056	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-			P-0006747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1041	105	559	1	ENST00000301067.7:c.1410_1412del	p.Pro471del	p.P471del	ENST00000301067	NM_003482.3	470	ccACCt/cct						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0008442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	99	277	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0008442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	138	158	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt						NEWRECORD																																																																									
RHEB	6009	MSKCC	GRCh37	7	151168674	151168674	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1193	183	552	1	ENST00000262187.5:c.293T>C	p.Val98Ala	p.V98A	ENST00000262187	NM_005614.3	98	gTt/gCt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	167	380	0	ENST00000269305.4:c.796G>C	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Cga						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48921973	48921974	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0008442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	80	328	0	ENST00000267163.4:c.518_519del	p.Tyr173PhefsTer11	p.Y173Ffs*11	ENST00000267163	NM_000321.2	171	ctTAta/ctta						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	133	299	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	299	319	1	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15292570	15292570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	46	241	0	ENST00000263388.2:c.2609C>T	p.Ser870Phe	p.S870F	ENST00000263388	NM_000435.2	870	tCc/tTc						NEWRECORD																																																																									
FGFR2	2263	MSKCC	GRCh37	10	123239450	123239450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	66	319	0	ENST00000358487.5:c.2387C>T	p.Ser796Phe	p.S796F	ENST00000358487	NM_000141.4	796	tCt/tTt						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11190834	11190834	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	21	124	0	ENST00000361445.4:c.5365G>A	p.Ala1789Thr	p.A1789T	ENST00000361445	NM_004958.3	1789	Gcc/Acc						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120548069	120548069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	13	28	0	ENST00000256646.2:c.298G>T	p.Asp100Tyr	p.D100Y	ENST00000256646	NM_024408.3	100	Gac/Tac						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106157996	106157996	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	39	188	0	ENST00000380013.4:c.2897A>T	p.Gln966Leu	p.Q966L	ENST00000380013	NM_001127208.2	966	cAg/cTg						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131915684	131915684	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	178	366	0	ENST00000265335.6:c.682A>T	p.Thr228Ser	p.T228S	ENST00000265335		228	Aca/Tca						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149515373	149515373	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	126	240	0	ENST00000261799.4:c.109C>A	p.Pro37Thr	p.P37T	ENST00000261799	NM_002609.3	37	Ccc/Acc						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	94066438	94066438	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	89	383	0	ENST00000369303.4:c.1321G>T	p.Ala441Ser	p.A441S	ENST00000369303	NM_004440.3	441	Gca/Tca						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2951921	2951921	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	98	219	2	ENST00000396946.4:c.3029C>A	p.Thr1010Lys	p.T1010K	ENST00000396946	NM_032415.4	1010	aCa/aAa						NEWRECORD																																																																									
RPS6KA4	8986	MSKCC	GRCh37	11	64128030	64128030	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	125	312	0	ENST00000334205.4:c.428G>T	p.Gly143Val	p.G143V	ENST00000334205	NM_003942.2	143	gGt/gTt						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46243830	46243830	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	55	230	0	ENST00000334344.6:c.1924G>T	p.Gly642Ter	p.G642*	ENST00000334344	NM_152641.2	642	Gga/Tga						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	41961408	41961408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	313	513	0	ENST00000219905.7:c.316C>T	p.Pro106Ser	p.P106S	ENST00000219905	NM_001164273.1	106	Cct/Tct						NEWRECORD																																																																									
YES1	7525	MSKCC	GRCh37	18	724551	724551	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	23	82	0	ENST00000314574.4:c.1505A>T	p.His502Leu	p.H502L	ENST00000314574	NM_005433.3	502	cAt/cTt						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39647352	39647352	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	147	402	0	ENST00000262039.4:c.2524G>T	p.Val842Phe	p.V842F	ENST00000262039	NM_002647.2	842	Gtt/Ttt						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76937660	76937660	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	55	464	0	ENST00000373344.5:c.3088A>T	p.Lys1030Ter	p.K1030*	ENST00000373344	NM_000489.3	1030	Aag/Tag						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243716080	243716080	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	365	326	0	ENST00000263826.5:c.1114del	p.Asp372MetfsTer10	p.D372Mfs*10	ENST00000263826	NM_005465.4	372	Gat/at						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2983875	2983875	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1547	281	359	0	ENST00000396946.4:c.655del	p.Val219SerfsTer2	p.V219Sfs*2	ENST00000396946	NM_032415.4	219	Gtc/tc						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156837917	156837918	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	73	325	1	ENST00000524377.1:c.450_451delinsAA	p.His151Asn	p.H151N	ENST00000524377	NM_002529.3	150	ctGCac/ctAAac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	15	642	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	21	360	1				ENST00000310581	NM_198253.2								NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	14	401	0	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56490834	56490834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	13	445	0	ENST00000267101.3:c.2280G>A	p.Met760Ile	p.M760I	ENST00000267101	NM_001982.3	760	atG/atA						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56437575	56437575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	19	565	0	ENST00000407977.2:c.887G>A	p.Arg296His	p.R296H	ENST00000407977		296	cGt/cAt						NEWRECORD																																																																									
TCF3	6929	MSKCC	GRCh37	19	1612346	1612346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	31	1057	4	ENST00000344749.5:c.1673G>A	p.Arg558His	p.R558H	ENST00000344749	NM_001136139.2	558	cGc/cAc						NEWRECORD																																																																									
STK40	83931	MSKCC	GRCh37	1	36807561	36807561	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	12	432	0	ENST00000373129.3:c.1103A>G	p.Glu368Gly	p.E368G	ENST00000373129	NM_032017.1	368	gAg/gGg						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226552821	226552821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182639036		P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	14	586	1	ENST00000366794.5:c.2540G>A	p.Arg847His	p.R847H	ENST00000366794	NM_001618.3	847	cGt/cAt						NEWRECORD																																																																									
MSH2	4436	MSKCC	GRCh37	2	47656969	47656969	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	16	721	0	ENST00000233146.2:c.1165C>T	p.Arg389Ter	p.R389*	ENST00000233146	NM_000251.2	389	Cga/Tga						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187630312	187630312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	21	544	2	ENST00000441802.2:c.670G>A	p.Ala224Thr	p.A224T	ENST00000441802	NM_005245.3	224	Gct/Act						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1294277	1294277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	10	283	3	ENST00000310581.5:c.724G>A	p.Ala242Thr	p.A242T	ENST00000310581	NM_198253.2	242	Gct/Act						NEWRECORD																																																																									
FYN	2534	MSKCC	GRCh37	6	112041242	112041242	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	33	969	2	ENST00000368678.4:c.13C>T	p.Gln5Ter	p.Q5*	ENST00000368678		5	Caa/Taa						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508284	106508284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	13	193	0	ENST00000359195.3:c.278C>T	p.Pro93Leu	p.P93L	ENST00000359195	NM_002649.2	93	cCg/cTg						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68867262	68867262	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	19	593	0	ENST00000261769.5:c.2509G>T	p.Gly837Ter	p.G837*	ENST00000261769	NM_004360.3	837	Gga/Tga						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89805041	89805041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	16	726	1	ENST00000389301.3:c.4336G>A	p.Ala1446Thr	p.A1446T	ENST00000389301	NM_000135.2	1446	Gct/Act						NEWRECORD																																																																									
STAT5A	6776	MSKCC	GRCh37	17	40456578	40456578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	20	960	2	ENST00000345506.4:c.1288C>T	p.Arg430Trp	p.R430W	ENST00000345506	NM_003152.3	430	Cgg/Tgg						NEWRECORD																																																																									
STAT5A	6776	MSKCC	GRCh37	17	40457680	40457680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	22	946	2	ENST00000345506.4:c.1433C>T	p.Ala478Val	p.A478V	ENST00000345506	NM_003152.3	478	gCc/gTc						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2227057	2227057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	13	223	1	ENST00000398665.3:c.4537G>A	p.Ala1513Thr	p.A1513T	ENST00000398665	NM_032482.2	1513	Gct/Act						NEWRECORD																																																																									
MAP2K2	5605	MSKCC	GRCh37	19	4117439	4117439	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202220799		P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	20	539	1	ENST00000262948.5:c.281C>T	p.Ser94Leu	p.S94L	ENST00000262948	NM_030662.3	94	tCg/tTg						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31389134	31389134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	20	671	0	ENST00000328111.2:c.2047C>T	p.Arg683Cys	p.R683C	ENST00000328111	NM_006892.3	683	Cgc/Tgc						NEWRECORD																																																																									
NF2	4771	MSKCC	GRCh37	22	30070875	30070875	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776109136		P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	15	686	1	ENST00000338641.4:c.1391C>T	p.Ala464Val	p.A464V	ENST00000338641	NM_000268.3	464	gCg/gTg						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41545993	41545993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	17	777	3	ENST00000263253.7:c.2608C>T	p.Pro870Ser	p.P870S	ENST00000263253	NM_001429.3	870	Cca/Tca						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151874051	151874052	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	22	897	0	ENST00000262189.6:c.8486_8487del	p.Pro2829GlnfsTer3	p.P2829Qfs*3	ENST00000262189	NM_170606.2	2829	cCA/c						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519886		P-0006856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	378	331	0	ENST00000349496.5:c.97T>C	p.Ser33Pro	p.S33P	ENST00000349496	NM_001904.3	33	Tct/Cct						NEWRECORD																																																																									
FOXL2	668	MSKCC	GRCh37	3	138664915	138664915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	128	127	0	ENST00000330315.3:c.650C>T	p.Ser217Phe	p.S217F	ENST00000330315	NM_023067.3	217	tCc/tTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577512	7577512	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	396	340	0	ENST00000269305.4:c.769C>G	p.Leu257Val	p.L257V	ENST00000269305	NM_001126112.2	257	Ctg/Gtg						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48941665	48941666	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0006856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	519	237	2	ENST00000267163.4:c.976_977del	p.Leu326Ter	p.L326*	ENST00000267163	NM_000321.2	325	taTCtt/tatt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	112	455	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0005847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	44	516	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt						NEWRECORD																																																																									
RAF1	5894	MSKCC	GRCh37	3	12650322	12650322	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	88	609	0	ENST00000251849.4:c.524A>G	p.His175Arg	p.H175R	ENST00000251849	NM_002880.3	175	cAc/cGc						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18650571	18650571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	93	571	0	ENST00000266497.5:c.2782C>T	p.Gln928Ter	p.Q928*	ENST00000266497		928	Cag/Tag						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70120244	70120244	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	98	590	0	ENST00000245479.2:c.1246C>T	p.Gln416Ter	p.Q416*	ENST00000245479	NM_000346.3	416	Caa/Taa						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1223039	1223052	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGACACCAAGGA	CCAGACACCAAGGA	-			P-0005847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	72	503	0	ENST00000326873.7:c.978_991del	p.Asp327ValfsTer28	p.D327Vfs*28	ENST00000326873	NM_000455.4	326	CCAGACACCAAGGAc/c						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0009640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	145	463	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	70	207	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55269434	55269434	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	164	383	0	ENST00000275493.2:c.3121A>G	p.Thr1041Ala	p.T1041A	ENST00000275493	NM_005228.3	1041	Acc/Gcc						NEWRECORD																																																																									
CBL	867	MSKCC	GRCh37	11	119142524	119142524	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	122	383	2	ENST00000264033.4:c.523C>T	p.Gln175Ter	p.Q175*	ENST00000264033	NM_005188.3	175	Cag/Tag						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115112555	115112555	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	286	282	0	ENST00000257566.3:c.1185del	p.Ser396ProfsTer236	p.S396Pfs*236	ENST00000257566	NM_016569.3	395	atC/at						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68849643	68849649	+	frameshift_variant	Frame_Shift_Del	DEL	TTTATGG	TTTATGG	-			P-0007100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	132	378	0	ENST00000261769.5:c.1546_1552del	p.Phe516AsnfsTer4	p.F516Nfs*4	ENST00000261769	NM_004360.3	516	TTTATGGaa/aa						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89685315	89685315	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0008006-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	139	337	0	ENST00000371953.3:c.209+1G>A		p.X70_splice	ENST00000371953	NM_000314.4	70							NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12028636	12028636	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008006-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	96	524	0	ENST00000353533.5:c.839C>A	p.Ser280Ter	p.S280*	ENST00000353533	NM_003010.3	280	tCa/tAa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	23	434	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	29	226	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
RHOA	387	MSKCC	GRCh37	3	49405890	49405890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	55	579	0	ENST00000418115.1:c.248G>A	p.Cys83Tyr	p.C83Y	ENST00000418115	NM_001664.2	83	tGt/tAt						NEWRECORD																																																																									
HIST1H3I	8354	MSKCC	GRCh37	6	27839742	27839742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	50	1148	0	ENST00000328488.2:c.352G>A	p.Val118Ile	p.V118I	ENST00000328488	NM_003533.2	118	Gtc/Atc						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117647389	117647389	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	76	676	0	ENST00000368508.3:c.5555G>T	p.Gly1852Val	p.G1852V	ENST00000368508	NM_002944.2	1852	gGa/gTa						NEWRECORD																																																																									
PAX5	5079	MSKCC	GRCh37	9	36840603	36840603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	20	271	0	ENST00000358127.4:c.1130G>A	p.Arg377Gln	p.R377Q	ENST00000358127	NM_001280556.1	377	cGa/cAa						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64575374	64575374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	51	253	0	ENST00000337652.1:c.658G>A	p.Val220Met	p.V220M	ENST00000337652	NM_130803.2	220	Gtg/Atg						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	463358	463358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	56	520	0	ENST00000399788.2:c.913G>A	p.Glu305Lys	p.E305K	ENST00000399788	NM_001042603.1	305	Gaa/Aaa						NEWRECORD																																																																									
HNF1A	6927	MSKCC	GRCh37	12	121431328	121431328	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	11	184	0	ENST00000257555.6:c.532A>G	p.Thr178Ala	p.T178A	ENST00000257555		178	Acc/Gcc						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21562325	21562325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	24	248	1	ENST00000382592.4:c.1594G>A	p.Asp532Asn	p.D532N	ENST00000382592	NM_014572.2	532	Gac/Aac						NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56878521	56878521	+	stop_lost	Nonstop_Mutation	SNP	A	A	C			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	28	591	0	ENST00000308159.5:c.2460A>C	p.Ter820TyrextTer50	p.*820Yext*50	ENST00000308159	NM_014669.4	820	taA/taC						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72827486	72827486	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	37	819	0	ENST00000268489.5:c.9095A>C	p.Lys3032Thr	p.K3032T	ENST00000268489	NM_006885.3	3032	aAg/aCg						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31022397	31022397	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	16	188	0	ENST00000375687.4:c.1882A>T	p.Arg628Ter	p.R628*	ENST00000375687	NM_015338.5	628	Aga/Tga						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123200089	123200089	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	41	567	2	ENST00000218089.9:c.2161G>T	p.Glu721Ter	p.E721*	ENST00000218089	NM_001042749.1	721	Gaa/Taa						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	33	395	0	ENST00000346208.3:c.1221_1222del	p.Pro408LeufsTer98	p.P408Lfs*98	ENST00000346208		407	tCG/t						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0004690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	299	591	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857449	9857449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	183	433	2	ENST00000330684.3:c.3952C>T	p.Arg1318Trp	p.R1318W	ENST00000330684	NM_001134407.1	1318	Cgg/Tgg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41101092	41101092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	170	380	1	ENST00000373198.4:c.1264C>T	p.Leu422Phe	p.L422F	ENST00000373198	NM_133170.3	422	Ctc/Ttc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174043	112174044	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0004690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	192	497	0	ENST00000257430.4:c.2756_2757del	p.Arg919LysfsTer4	p.R919Kfs*4	ENST00000257430	NM_000038.5	918	GAg/g						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0006860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	244	449	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	178	211	0	ENST00000263967.3:c.1034A>T	p.Asn345Ile	p.N345I	ENST00000263967	NM_006218.2	345	aAt/aTt						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0006860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	174	273	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0006860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	218	323	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47125785	47125785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	160	235	1	ENST00000409792.3:c.5485C>T	p.Gln1829Ter	p.Q1829*	ENST00000409792	NM_014159.6	1829	Cag/Tag						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70352373	70352373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	260	581	2	ENST00000374080.3:c.4400G>A	p.Arg1467Gln	p.R1467Q	ENST00000374080		1467	cGa/cAa						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89341585	89341585	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	58	267	0	ENST00000301030.4:c.7485del	p.Ser2496ProfsTer6	p.S2496Pfs*6	ENST00000301030	NM_001256183.1	2495	ccC/cc						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52662980	52662980	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	243	268	0	ENST00000394830.3:c.1373del	p.Asn458MetfsTer17	p.N458Mfs*17	ENST00000394830	NM_018313.4	458	aAt/at						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0005178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	76	296	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0005178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	331	420	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0005178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	870	380	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37883547	37883547	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0005178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	82	387	0	ENST00000269571.5:c.3160-1G>C		p.X1054_splice	ENST00000269571		1054							NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50919051	50919051	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144111108		P-0005178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	30	634	2	ENST00000440232.2:c.2788G>A	p.Ala930Thr	p.A930T	ENST00000440232	NM_002691.3	930	Gcc/Acc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0009080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	380	331	1	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55963919	55963919	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs41469552		P-0009080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	372	323	2	ENST00000263923.4:c.2524C>A	p.Arg842Ser	p.R842S	ENST00000263923	NM_002253.2	842	Cgt/Agt						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187509894	187509894	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	261	286	0	ENST00000441802.2:c.13619A>G	p.Tyr4540Cys	p.Y4540C	ENST00000441802	NM_005245.3	4540	tAc/tGc						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29654769	29654769	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	302	295	0	ENST00000358273.4:c.5521C>T	p.Gln1841Ter	p.Q1841*	ENST00000358273	NM_001042492.2	1841	Caa/Taa						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41525924	41525924	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	962	402	0	ENST00000263253.7:c.1199T>G	p.Ile400Ser	p.I400S	ENST00000263253	NM_001429.3	400	aTt/aGt						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47059229	47059237	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTGCAGGC	TCTGCAGGC	-			P-0009080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	262	186	0	ENST00000409792.3:c.7432-8_7432del		p.X2478_splice	ENST00000409792	NM_014159.6	2478							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0006813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	490	308	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0006813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	64	215	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0006813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	120	177	1	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0006813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	27	213	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65332740	65332740	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	135	232	0	ENST00000342505.4:c.799A>G	p.Lys267Glu	p.K267E	ENST00000342505	NM_002227.2	267	Aag/Gag						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41739895	41739895	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1130	271	335	0	ENST00000242208.4:c.78del	p.Glu27ArgfsTer37	p.E27Rfs*37	ENST00000242208	NM_002192.2	26	tcC/tc						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005804-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	128	383	0	ENST00000347630.2:c.392G>C	p.Trp131Ser	p.W131S	ENST00000347630	NM_001007230.1	131	tGg/tCg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175193	112175193	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005804-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	12	207	0	ENST00000257430.4:c.3904delC	p.Leu1302CysfsTer3	p.L1302Cfs*3	ENST00000257430	NM_000038.5	1301	aCc/ac						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007629-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	156	278	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0007629-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	178	357	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0007629-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	79	345	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11293481	11293481	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007629-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	128	335	0	ENST00000361445.4:c.2395C>G	p.Leu799Val	p.L799V	ENST00000361445	NM_004958.3	799	Ctg/Gtg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0005259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	102	569	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0005259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	83	669	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30715678	30715678	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	76	572	1	ENST00000359013.4:c.1411G>T	p.Asp471Tyr	p.D471Y	ENST00000359013	NM_001024847.2	471	Gat/Tat						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28589762	28589762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	132	706	0	ENST00000241453.7:c.2618C>T	p.Ser873Leu	p.S873L	ENST00000241453	NM_004119.2	873	tCa/tTa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007893-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	453	283	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
RAD54L	8438	MSKCC	GRCh37	1	46726417	46726417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007893-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	225	302	0	ENST00000371975.4:c.496G>A	p.Glu166Lys	p.E166K	ENST00000371975	NM_003579.3	166	Gag/Aag						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117658497	117658497	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007893-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	139	215	0	ENST00000368508.3:c.5086T>C	p.Tyr1696His	p.Y1696H	ENST00000368508	NM_002944.2	1696	Tac/Cac						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2946355	2946355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007893-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1103	352	464	0	ENST00000396946.4:c.3382G>A	p.Val1128Ile	p.V1128I	ENST00000396946	NM_032415.4	1128	Gta/Ata						NEWRECORD																																																																									
EED	8726	MSKCC	GRCh37	11	85975279	85975279	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007893-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	291	501	0	ENST00000263360.6:c.700G>C	p.Gly234Arg	p.G234R	ENST00000263360	NM_003797.3	234	Ggg/Cgg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151251	112151252	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0007893-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	341	511	0	ENST00000257430.4:c.896_897del	p.Ser299CysfsTer27	p.S299Cfs*27	ENST00000257430	NM_000038.5	298	caCTct/cact						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0008917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2188	279	420	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0008917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	1598	369	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0008917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	61	409	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150001390	150001390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	50	526	0	ENST00000253339.5:c.2214G>C	p.Lys738Asn	p.K738N	ENST00000253339		738	aaG/aaC						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145739088	145739088	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	69	249	0	ENST00000428558.2:c.2067G>T	p.Leu689Phe	p.L689F	ENST00000428558	NM_004260.3	689	ttG/ttT						NEWRECORD																																																																									
CDK4	1019	MSKCC	GRCh37	12	58145349	58145349	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	51	341	0	ENST00000257904.6:c.152T>C	p.Ile51Thr	p.I51T	ENST00000257904	NM_000075.3	51	aTc/aCc						NEWRECORD																																																																									
RPTOR	57521	MSKCC	GRCh37	17	78931503	78931503	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	68	407	0	ENST00000306801.3:c.3450G>A	p.Trp1150Ter	p.W1150*	ENST00000306801	NM_020761.2	1150	tgG/tgA						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11188143	11188167	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGTAGACTTAGAAGCCACTGTCA	GTGGTAGACTTAGAAGCCACTGTCA	-			P-0008917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	53	308	0	ENST00000361445.4:c.5927_5951del	p.Leu1976ArgfsTer12	p.L1976Rfs*12	ENST00000361445	NM_004958.3	1976	cTGACAGTGGCTTCTAAGTCTACCACg/cg						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16202996	16202996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	37	361	0	ENST00000375759.3:c.704G>A	p.Arg235Gln	p.R235Q	ENST00000375759	NM_015001.2	235	cGg/cAg						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32936831	32936831	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0008049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	294	495	0	ENST00000380152.3:c.7976+1G>A		p.X2659_splice	ENST00000380152		2659							NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68846037	68846037	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0008049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	115	672	0	ENST00000261769.5:c.1009-1G>A		p.X337_splice	ENST00000261769	NM_004360.3	337							NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72991902	72991902	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	190	1002	2	ENST00000268489.5:c.2143C>T	p.Arg715Ter	p.R715*	ENST00000268489	NM_006885.3	715	Cga/Tga						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48941462	48941699	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTACCTCACTTTTAGATAGACCTTATTTATATTGCATGCGAACTCAGTGTATATTACAAAATTAAATGTATATTATACAAAAATTCTTTAATGAAATCTGTGCCTCTGTGTGCTGAGAGATGTAATGACATGTAAAGGATAATTGTCAGTGACTTTTTTCTTTCAAGGTTGAAAATCTTTCTAAACGATACGAAGAAATTTATCTTAAAAATAAAGATCTAGATGCAAGATTATTTT	TGTACCTCACTTTTAGATAGACCTTATTTATATTGCATGCGAACTCAGTGTATATTACAAAATTAAATGTATATTATACAAAAATTCTTTAATGAAATCTGTGCCTCTGTGTGCTGAGAGATGTAATGACATGTAAAGGATAATTGTCAGTGACTTTTTTCTTTCAAGGTTGAAAATCTTTCTAAACGATACGAAGAAATTTATCTTAAAAATAAAGATCTAGATGCAAGATTATTTT	-			P-0008049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			27	39	33	0	ENST00000267163.4:c.940-166_1011del		p.X314_splice	ENST00000267163	NM_000321.2	314							NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115109975	115109978	+	frameshift_variant	Frame_Shift_Del	DEL	GCAT	GCAT	-			P-0008049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	68	342	0	ENST00000257566.3:c.1900_1903del	p.Met634AlafsTer254	p.M634Afs*254	ENST00000257566	NM_016569.3	634	ATGCgc/gc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	46	267	0	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0009196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	18	287	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220717	1220717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0009196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	48	216	1	ENST00000326873.7:c.734+1G>T		p.X245_splice	ENST00000326873	NM_000455.4	245							NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198267367	198267367	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	45	331	1	ENST00000335508.6:c.1990G>T	p.Gly664Cys	p.G664C	ENST00000335508	NM_012433.2	664	Ggt/Tgt						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52643549	52643549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	56	284	0	ENST00000394830.3:c.2347C>T	p.His783Tyr	p.H783Y	ENST00000394830	NM_018313.4	783	Cac/Tac						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134851726	134851726	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	46	259	0	ENST00000398015.3:c.1132G>T	p.Glu378Ter	p.E378*	ENST00000398015	NM_004441.4	378	Gag/Tag						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55597504	55597504	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	35	319	2	ENST00000288135.5:c.2152A>T	p.Thr718Ser	p.T718S	ENST00000288135	NM_000222.2	718	Act/Tct						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30675196	30675196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	66	371	0	ENST00000376406.3:c.3049G>A	p.Ala1017Thr	p.A1017T	ENST00000376406	NM_014641.2	1017	Gct/Act						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5126332	5126332	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0009196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	19	178	0	ENST00000381652.3:c.3178-1G>C		p.X1060_splice	ENST00000381652	NM_004972.3	1060							NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10597430	10597430	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	86	331	0	ENST00000171111.5:c.1773G>A	p.Trp591Ter	p.W591*	ENST00000171111	NM_203500.1	591	tgG/tgA						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63411212	63411212	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	56	379	1	ENST00000330258.3:c.1955T>A	p.Leu652Ter	p.L652*	ENST00000330258	NM_152424.3	652	tTa/tAa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	344	347	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0008261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	733	491	2	ENST00000269305.4:c.672G>T	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaT						NEWRECORD																																																																									
FOXL2	668	MSKCC	GRCh37	3	138664819	138664819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			12	44	45	0	ENST00000330315.3:c.746C>A	p.Ala249Glu	p.A249E	ENST00000330315	NM_023067.3	249	gCg/gAg						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	94120873	94120873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	583	578	2	ENST00000369303.4:c.178G>T	p.Gly60Cys	p.G60C	ENST00000369303	NM_004440.3	60	Ggt/Tgt						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187539078	187539078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	594	543	0	ENST00000441802.2:c.8662G>T	p.Val2888Phe	p.V2888F	ENST00000441802	NM_005245.3	2888	Gtt/Ttt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971053	21971053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	125	239	0	ENST00000304494.5:c.305C>T	p.Ala102Val	p.A102V	ENST00000304494	NM_000077.4	102	gCg/gTg						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46254639	46254639	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	599	464	0	ENST00000334344.6:c.4829C>G	p.Ser1610Cys	p.S1610C	ENST00000334344	NM_152641.2	1610	tCt/tGt						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32913233	32913233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	588	707	1	ENST00000380152.3:c.4741G>A	p.Glu1581Lys	p.E1581K	ENST00000380152		1581	Gag/Aag						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9934798	9934798	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	293	572	0	ENST00000330684.3:c.1492G>T	p.Gly498Cys	p.G498C	ENST00000330684	NM_001134407.1	498	Ggt/Tgt						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11141502	11141502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	402	436	0	ENST00000344626.4:c.3479G>T	p.Gly1160Val	p.G1160V	ENST00000344626	NM_003072.3	1160	gGg/gTg						NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103527919	103527934	+	frameshift_variant	Frame_Shift_Del	DEL	CAGATTCTAAAGGAAA	CAGATTCTAAAGGAAA	-			P-0008261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	68	359	0	ENST00000355739.4:c.3227_3242del	p.Ser1076Ter	p.S1076*	ENST00000355739	NM_000123.3	1076	tCAGATTCTAAAGGAAAg/tg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	316	528	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48954198	48954198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	396	607	0	ENST00000267163.4:c.1399C>T	p.Arg467Ter	p.R467*	ENST00000267163	NM_000321.2	467	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0007548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	458	785	4	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112177788	112177788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	225	386	0	ENST00000257430.4:c.6497G>A	p.Arg2166Gln	p.R2166Q	ENST00000257430	NM_000038.5	2166	cGa/cAa						NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48026303	48026303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	156	522	2	ENST00000234420.5:c.1181C>T	p.Ser394Phe	p.S394F	ENST00000234420	NM_000179.2	394	tCt/tTt						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142277619	142277619	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0007548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	97	302	0	ENST00000350721.4:c.1733-1G>A		p.X578_splice	ENST00000350721	NM_001184.3	578							NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185198252	185198252	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	307	499	0	ENST00000265026.3:c.2734G>C	p.Ala912Pro	p.A912P	ENST00000265026	NM_004721.4	912	Gcc/Ccc						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508082	106508082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	126	296	1	ENST00000359195.3:c.76C>T	p.Arg26Cys	p.R26C	ENST00000359195	NM_002649.2	26	Cgc/Tgc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0008438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	119	325	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt						NEWRECORD																																																																									
NKX2-1	7080	MSKCC	GRCh37	14	36988309	36988309	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	50	127	0	ENST00000354822.5:c.344delG	p.Gly115AlafsTer10	p.G115Afs*10	ENST00000354822	NM_001079668.2	115	gGc/gc						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55599312	55599312	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	111	371	0	ENST00000288135.5:c.2438T>C	p.Leu813Pro	p.L813P	ENST00000288135	NM_000222.2	813	cTa/cCa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0008650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	29	286	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0007657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	76	305	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	98	226	2	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56481627	56481627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	198	431	0	ENST00000267101.3:c.662C>T	p.Pro221Leu	p.P221L	ENST00000267101	NM_001982.3	221	cCc/cTc						NEWRECORD																																																																									
FGFR3	2261	MSKCC	GRCh37	4	1807896	1807896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	48	299	0	ENST00000260795.2:c.1955C>T	p.Thr652Ile	p.T652I	ENST00000260795		652	aCc/aTc						NEWRECORD																																																																									
FLCN	201163	MSKCC	GRCh37	17	17124931	17124940	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GCCTTCAGGA	GCCTTCAGGA	-			P-0007657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	29	246	0	ENST00000285071.4:c.782_791del	p.Leu261ArgfsTer6	p.L261Rfs*6	ENST00000285071	NM_144997.5	261	cTCCTGAAGGCg/cg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578206	7578207	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0007657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	129	414	0	ENST00000269305.4:c.642_643del	p.His214GlnfsTer7	p.H214Qfs*7	ENST00000269305	NM_001126112.2	214	caTAgt/cagt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	257	474	0	ENST00000269305.4:c.497C>A	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tAa						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16256687	16256740	+	inframe_deletion	In_Frame_Del	DEL	GAACAGATGGCAGATATGGCCAAAATAAAACTATCTGTCTTGAATTCTGAAGAT	GAACAGATGGCAGATATGGCCAAAATAAAACTATCTGTCTTGAATTCTGAAGAT	-			P-0006206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	175	324	0	ENST00000375759.3:c.3956_4009del	p.Gln1319_Glu1336del	p.Q1319_E1336del	ENST00000375759	NM_015001.2	1318	GAACAGATGGCAGATATGGCCAAAATAAAACTATCTGTCTTGAATTCTGAAGAT/-						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	209	327	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0007865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	191	267	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575183	48575183	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	220	305	0	ENST00000342988.3:c.377T>C	p.Val126Ala	p.V126A	ENST00000342988	NM_005359.5	126	gTc/gCc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	17	254	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578210	7578210	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	482	745	0	ENST00000269305.4:c.639del	p.His214IlefsTer33	p.H214Ifs*33	ENST00000269305	NM_001126112.2	213	cgA/cg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0005568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	96	266	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578448	7578448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	104	411	0	ENST00000269305.4:c.482C>A	p.Ala161Asp	p.A161D	ENST00000269305	NM_001126112.2	161	gCc/gAc						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32187947	32187947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	64	491	1	ENST00000375023.3:c.1274C>T	p.Ser425Leu	p.S425L	ENST00000375023	NM_004557.3	425	tCg/tTg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591933	48591933	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1060500733		P-0005568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	151	371	0	ENST00000342988.3:c.1096C>T	p.Gln366Ter	p.Q366*	ENST00000342988	NM_005359.5	366	Caa/Taa						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220504	1220544	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTAGGCACGTGCTAGGGGGGGCCCTGGGGCGCCCCCTCCC	GGTAGGCACGTGCTAGGGGGGGCCCTGGGGCGCCCCCTCCC	-			P-0005568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	104	341	0	ENST00000326873.7:c.597+2_598-34del		p.X199_splice	ENST00000326873	NM_000455.4	199							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	209	505	0	ENST00000269305.4:c.643A>C	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	Agt/Cgt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0007841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1100	355	324	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs879253911		P-0007841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	104	244	0	ENST00000269305.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000269305	NM_001126112.2	180	Gag/Aag						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65330484	65330484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	61	369	0	ENST00000342505.4:c.1162G>A	p.Asp388Asn	p.D388N	ENST00000342505	NM_002227.2	388	Gac/Aac						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11136148	11136148	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1382	78	423	0	ENST00000344626.4:c.3132G>C	p.Lys1044Asn	p.K1044N	ENST00000344626	NM_003072.3	1044	aaG/aaC						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484595	57484595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	63	152	0	ENST00000371085.3:c.679C>A	p.Gln227Lys	p.Q227K	ENST00000371085	NM_000516.4	227	Cag/Aag						NEWRECORD																																																																									
FGFR4	2264	MSKCC	GRCh37	5	176520166	176520166	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs911440999		P-0004995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	64	224	0	ENST00000292408.4:c.1085C>T	p.Ala362Val	p.A362V	ENST00000292408	NM_213647.1	362	gCg/gTg						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41242982	41242982	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	45	284	0	ENST00000357654.3:c.4164G>C	p.Gln1388His	p.Q1388H	ENST00000357654	NM_007294.3	1388	caG/caC						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	83	220	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782329		P-0006775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	219	499	0	ENST00000269305.4:c.746G>C	p.Arg249Thr	p.R249T	ENST00000269305	NM_001126112.2	249	aGg/aCg						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519920		P-0006775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	204	214	1	ENST00000397062.3:c.85G>T	p.Asp29Tyr	p.D29Y	ENST00000397062	NM_006164.4	29	Gat/Tat						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215645919	215645919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	146	563	0	ENST00000260947.4:c.679G>A	p.Gly227Ser	p.G227S	ENST00000260947	NM_000465.2	227	Ggt/Agt						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187629441	187629441	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	184	346	0	ENST00000441802.2:c.1541A>G	p.His514Arg	p.H514R	ENST00000441802	NM_005245.3	514	cAt/cGt						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89346079	89346079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	61	101	0	ENST00000301030.4:c.6871G>A	p.Glu2291Lys	p.E2291K	ENST00000301030	NM_001256183.1	2291	Gag/Aag						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9547032	9547032	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0006775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	33	136	0	ENST00000353224.5:c.991-1G>A		p.X331_splice	ENST00000353224	NM_177990.2	331							NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76940087	76940087	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0006775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	64	164	0	ENST00000373344.5:c.663-2A>T		p.X221_splice	ENST00000373344	NM_000489.3	221							NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123205008	123205008	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	56	144	0	ENST00000218089.9:c.2368A>G	p.Ile790Val	p.I790V	ENST00000218089	NM_001042749.1	790	Att/Gtt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	63	363	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	65	525	1	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971107	21971107	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	71	242	0	ENST00000304494.5:c.251A>T	p.Asp84Val	p.D84V	ENST00000304494	NM_000077.4	84	gAc/gTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003939-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			386	80	333	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac						NEWRECORD																																																																									
MCL1	4170	MSKCC	GRCh37	1	150551457	150551457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003939-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1404	392	710	1	ENST00000369026.2:c.550C>T	p.Arg184Trp	p.R184W	ENST00000369026	NM_021960.4	184	Cgg/Tgg						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131973802	131973802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003939-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			644	85	289	0	ENST00000265335.6:c.3505G>A	p.Ala1169Thr	p.A1169T	ENST00000265335		1169	Gcc/Acc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0004795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	94	514	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126							NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89521769	89521769	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0004795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	73	413	0	ENST00000336596.2:c.2846A>T	p.Asp949Val	p.D949V	ENST00000336596	NM_005233.5	949	gAt/gTt						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56177433	56177433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	132	579	0	ENST00000399503.3:c.2406G>T	p.Leu802Phe	p.L802F	ENST00000399503	NM_005921.1	802	ttG/ttT						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55268090	55268090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	80	570	1	ENST00000275493.2:c.2930G>A	p.Arg977His	p.R977H	ENST00000275493	NM_005228.3	977	cGc/cAc						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43612120	43612120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773256580		P-0004795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	52	808	2	ENST00000355710.3:c.2225C>T	p.Thr742Met	p.T742M	ENST00000355710	NM_020975.4	742	aCg/aTg						NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45007672	45007672	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	97	477	0	ENST00000558401.1:c.119C>G	p.Ser40Ter	p.S40*	ENST00000558401	NM_004048.2	40	tCa/tGa						NEWRECORD																																																																									
PDPK1	5170	MSKCC	GRCh37	16	2647728	2647728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	77	716	0	ENST00000342085.4:c.1631G>A	p.Arg544Lys	p.R544K	ENST00000342085	NM_002613.4	544	aGg/aAg						NEWRECORD																																																																									
MAPK3	5595	MSKCC	GRCh37	16	30134499	30134499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	23	335	0	ENST00000263025.4:c.32G>T	p.Gly11Val	p.G11V	ENST00000263025	NM_002746.2	11	gGc/gTc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604655	48604655	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28936392		P-0004795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	39	488	0	ENST00000342988.3:c.1477G>C	p.Asp493His	p.D493H	ENST00000342988	NM_005359.5	493	Gat/Cat						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56439962	56439962	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	90	632	0	ENST00000407977.2:c.630del	p.Phe210LeufsTer2	p.F210Lfs*2	ENST00000407977		210	ttT/tt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0005580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	134	462	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108117764	108117772	+	inframe_deletion	In_Frame_Del	DEL	TATAGGAAG	TATAGGAAG	-			P-0005580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	48	417	0	ENST00000278616.4:c.977_985del	p.Ile326_Ser328del	p.I326_S328del	ENST00000278616	NM_000051.3	325	caTATAGGAAGt/cat						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27088689	27088689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	205	478	0	ENST00000324856.7:c.2298G>T	p.Gln766His	p.Q766H	ENST00000324856	NM_006015.4	766	caG/caT						NEWRECORD																																																																									
CDKN2C	1031	MSKCC	GRCh37	1	51439677	51439677	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	160	315	0	ENST00000262662.1:c.242G>T	p.Gly81Val	p.G81V	ENST00000262662		81	gGt/gTt						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156841515	156841515	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	147	310	0	ENST00000524377.1:c.818G>T	p.Arg273Leu	p.R273L	ENST00000524377	NM_002529.3	273	cGg/cTg						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55984842	55984842	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	362	436	2	ENST00000263923.4:c.287A>T	p.Asn96Ile	p.N96I	ENST00000263923	NM_002253.2	96	aAt/aTt						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295307	1295307	+	upstream_gene_variant	5'Flank	SNP	G	G	C			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	171	369	0				ENST00000310581	NM_198253.2								NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175951	112175951	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	247	307	1	ENST00000257430.4:c.4660G>T	p.Glu1554Ter	p.E1554*	ENST00000257430	NM_000038.5	1554	Gaa/Taa						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149460486	149460486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	394	374	0	ENST00000286301.3:c.151G>A	p.Asp51Asn	p.D51N	ENST00000286301	NM_005211.3	51	Gat/Aat						NEWRECORD																																																																									
DAXX	1616	MSKCC	GRCh37	6	33289657	33289657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	270	262	0	ENST00000374542.5:c.46G>A	p.Asp16Asn	p.D16N	ENST00000374542	NM_001141970.1	16	Gat/Aat						NEWRECORD																																																																									
XRCC2	7516	MSKCC	GRCh37	7	152346098	152346098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	447	618	0	ENST00000359321.1:c.472G>T	p.Asp158Tyr	p.D158Y	ENST00000359321	NM_005431.1	158	Gac/Tac						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89711916	89711916	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	168	387	0	ENST00000371953.3:c.534T>G	p.Tyr178Ter	p.Y178*	ENST00000371953	NM_000314.4	178	taT/taG						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49437211	49437211	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	346	314	2	ENST00000301067.7:c.5468G>T	p.Gly1823Val	p.G1823V	ENST00000301067	NM_003482.3	1823	gGa/gTa						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32914484	32914484	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	186	600	0	ENST00000380152.3:c.5992C>T	p.Gln1998Ter	p.Q1998*	ENST00000380152		1998	Caa/Taa						NEWRECORD																																																																									
FOXO1	2308	MSKCC	GRCh37	13	41134795	41134795	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	307	556	0	ENST00000379561.5:c.833A>T	p.Gln278Leu	p.Q278L	ENST00000379561	NM_002015.3	278	cAg/cTg						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2121804	2121804	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	306	352	0	ENST00000219476.3:c.1966G>T	p.Glu656Ter	p.E656*	ENST00000219476	NM_000548.3	656	Gag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	731	454	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224							NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59761488	59761488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	587	270	0	ENST00000259008.2:c.2919C>A	p.Phe973Leu	p.F973L	ENST00000259008	NM_032043.2	973	ttC/ttA						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39584377	39584377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	515	357	0	ENST00000262039.4:c.1042G>T	p.Ala348Ser	p.A348S	ENST00000262039	NM_002647.2	348	Gcc/Tcc						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5222800	5222800	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	261	159	0	ENST00000357368.4:c.3003G>T	p.Lys1001Asn	p.K1001N	ENST00000357368	NM_002850.3	1001	aaG/aaT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0006770-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	357	324	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga						NEWRECORD																																																																									
PIK3CD	5293	MSKCC	GRCh37	1	9775687	9775687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006770-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	345	438	0	ENST00000377346.4:c.230C>T	p.Ala77Val	p.A77V	ENST00000377346	NM_005026.3	77	gCg/gTg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006770-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	182	210	0	ENST00000257430.4:c.4067C>A	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tAa						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39911436	39911436	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006770-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	60	248	0	ENST00000378444.4:c.5194G>T	p.Glu1732Ter	p.E1732*	ENST00000378444	NM_001123385.1	1732	Gaa/Taa						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63554728	63554729	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0006770-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	164	184	0	ENST00000307078.5:c.10_11del	p.Ala4TyrfsTer15	p.A4Yfs*15	ENST00000307078	NM_004655.3	4	GCt/t						NEWRECORD																																																																									
PIK3CB	5291	MSKCC	GRCh37	3	138374241	138374245	+	frameshift_variant	Frame_Shift_Del	DEL	TAGTC	TAGTC	-			P-0006770-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	58	362	0	ENST00000289153.2:c.3199_3203del	p.Asp1067GlnfsTer?	p.D1067Qfs*?	ENST00000289153	NM_006219.2	1067	GACTAc/c						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174520	112174533	+	frameshift_variant	Frame_Shift_Del	DEL	GTTTATACTGAGAG	GTTTATACTGAGAG	-			P-0006770-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	154	310	0	ENST00000257430.4:c.3229_3242del	p.Val1077HisfsTer2	p.V1077Hfs*2	ENST00000257430	NM_000038.5	1077	GTTTATACTGAGAGc/c						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	135	294	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0007097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	189	454	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0007097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	322	247	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	76	284	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175525	112175525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	44	329	0	ENST00000257430.4:c.4234G>T	p.Gly1412Ter	p.G1412*	ENST00000257430	NM_000038.5	1412	Gga/Tga						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41729603	41729603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	96	564	0	ENST00000242208.4:c.926G>A	p.Arg309Gln	p.R309Q	ENST00000242208	NM_002192.2	309	cGg/cAg						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73337660	73337660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	36	312	0	ENST00000377767.4:c.2056G>A	p.Ala686Thr	p.A686T	ENST00000377767	NM_014953.3	686	Gct/Act						NEWRECORD																																																																									
ZRSR2	8233	MSKCC	GRCh37	X	15841258	15841258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	117	473	0	ENST00000307771.7:c.1342C>T	p.Arg448Cys	p.R448C	ENST00000307771	NM_005089.3	448	Cgc/Tgc						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0008152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	23	418	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0008152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	14	427	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	48	536	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68862076	68862076	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	61	489	0	ENST00000261769.5:c.2165-1G>A		p.X722_splice	ENST00000261769	NM_004360.3	722							NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56152443	56152446	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0006551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	29	351	0	ENST00000399503.3:c.502_505del	p.Glu168LeufsTer16	p.E168Lfs*16	ENST00000399503	NM_005921.1	167	AAAGaa/aa						NEWRECORD																																																																									
SDHB	6390	MSKCC	GRCh37	1	17355104	17355104	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1200	455	512	2	ENST00000375499.3:c.414T>A	p.Asp138Glu	p.D138E	ENST00000375499	NM_003000.2	138	gaT/gaA						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115975	8115975	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	121	139	0	ENST00000346208.3:c.1321del	p.Ala441ProfsTer34	p.A441Pfs*34	ENST00000346208		441	Gcc/cc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0005368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	292	448	1	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag						NEWRECORD																																																																									
PIK3R2	5296	MSKCC	GRCh37	19	18271974	18271974	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	65	152	0	ENST00000222254.8:c.577G>C	p.Glu193Gln	p.E193Q	ENST00000222254	NM_005027.3	193	Gag/Cag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0009096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	181	343	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47045030	47045030	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0009096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	154	161	0	ENST00000329236.7:c.2121+1G>A		p.X707_splice	ENST00000329236	NM_001204466.1	707							NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0006272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	38	318	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0007676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	54	475	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398220	25398220	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	85	510	0	ENST00000256078.4:c.99T>G	p.Asp33Glu	p.D33E	ENST00000256078	NM_033360.2	33	gaT/gaG						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57857796	57857796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	115	695	0	ENST00000228682.2:c.115C>T	p.Pro39Ser	p.P39S	ENST00000228682	NM_005269.2	39	Ccc/Tcc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	82	371	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
PIK3CD	5293	MSKCC	GRCh37	1	9782318	9782318	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	113	474	0	ENST00000377346.4:c.2251T>A	p.Phe751Ile	p.F751I	ENST00000377346	NM_005026.3	751	Ttc/Atc						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50444447	50444447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	58	201	0	ENST00000331340.3:c.377G>T	p.Cys126Phe	p.C126F	ENST00000331340	NM_006060.4	126	tGc/tTc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0006415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	75	426	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2959007	2959007	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0006415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	93	469	0	ENST00000396946.4:c.2509C>T	p.Arg837Ter	p.R837*	ENST00000396946	NM_032415.4	837	Cga/Tga						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8404589	8404589	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0006415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	142	605	0	ENST00000356435.5:c.4158C>G	p.Tyr1386Ter	p.Y1386*	ENST00000356435		1386	taC/taG						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692896	89692896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	61	366	0	ENST00000371953.3:c.380G>A	p.Gly127Glu	p.G127E	ENST00000371953	NM_000314.4	127	gGa/gAa						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48584802	48584805	+	frameshift_variant	Frame_Shift_Del	DEL	ATGC	ATGC	GG			P-0006415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			71	94	588	0	ENST00000342988.3:c.880_883delinsGG	p.Met294GlyfsTer13	p.M294Gfs*13	ENST00000342988	NM_005359.5	294	ATGCcg/GGcg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0008747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	431	749	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380277	25380277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	289	547	0	ENST00000256078.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	61	Caa/Aaa						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508826	106508826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	157	436	1	ENST00000359195.3:c.820G>A	p.Val274Ile	p.V274I	ENST00000359195	NM_002649.2	274	Gtc/Atc						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32456881	32456881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	62	136	0	ENST00000332351.3:c.11C>T	p.Pro4Leu	p.P4L	ENST00000332351	NM_024426.4	4	cCg/cTg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	119	346	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0007162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	115	519	2	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0007162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	235	295	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180048131	180048131	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	48	368	1	ENST00000261937.6:c.2142C>A	p.Asp714Glu	p.D714E	ENST00000261937	NM_182925.4	714	gaC/gaA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	260	378	0	ENST00000269305.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000269305	NM_001126112.2	130	Ctc/Ttc						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2979435	2979435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1097	131	409	0	ENST00000396946.4:c.812G>A	p.Arg271Gln	p.R271Q	ENST00000396946	NM_032415.4	271	cGg/cAg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	194	291	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	69	154	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	258	472	0	ENST00000342988.3:c.1051G>T	p.Asp351Tyr	p.D351Y	ENST00000342988	NM_005359.5	351	Gat/Tat						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	133	341	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178096319	178096319	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	246	337	0	ENST00000397062.3:c.1012G>T	p.Glu338Ter	p.E338*	ENST00000397062	NM_006164.4	338	Gaa/Taa						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55155022	55155022	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	98	363	0	ENST00000257290.5:c.2731A>T	p.Ser911Cys	p.S911C	ENST00000257290	NM_006206.4	911	Agt/Tgt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112176023	112176024	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0007405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	145	255	0	ENST00000257430.4:c.4733_4734del	p.Cys1578TyrfsTer12	p.C1578Yfs*12	ENST00000257430	NM_000038.5	1578	TGt/t						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0009954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1283	318	751	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	370	375	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0009954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	1042	533	1	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	94120360	94120360	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	603	891	2	ENST00000369303.4:c.691C>T	p.Arg231Ter	p.R231*	ENST00000369303	NM_004440.3	231	Cga/Tga						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55371782	55371782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	41	76	1	ENST00000297316.4:c.472G>A	p.Gly158Ser	p.G158S	ENST00000297316	NM_022454.3	158	Ggc/Agc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112157640	112157655	+	frameshift_variant	Frame_Shift_Del	DEL	ATGAAACTTTCATTTG	ATGAAACTTTCATTTG	-			P-0009954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	374	601	1	ENST00000257430.4:c.1365_1380del	p.Leu456SerfsTer6	p.L456Sfs*6	ENST00000257430	NM_000038.5	454	ATGAAACTTTCATTTGat/at						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175751	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	A			P-0009954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	151	477	0	ENST00000257430.4:c.4460_4461delinsA	p.Thr1487AsnfsTer20	p.T1487Nfs*20	ENST00000257430	NM_000038.5	1487	aCT/aA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	689	421	1	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86564308	86564308	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	48	354	0	ENST00000274376.6:c.40G>T	p.Val14Leu	p.V14L	ENST00000274376	NM_002890.2	14	Gta/Tta						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38060604	38060604	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3265	682	1009	1	ENST00000250448.2:c.1385G>C	p.Gly462Ala	p.G462A	ENST00000250448	NM_004496.3	462	gGt/gCt						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7267688	7267688	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140762552		P-0008666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	66	388	0	ENST00000302850.5:c.320C>T	p.Thr107Met	p.T107M	ENST00000302850	NM_000208.2	107	aCg/aTg						NEWRECORD																																																																									
ERG	2078	MSKCC	GRCh37	21	39755470	39755470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	210	437	3	ENST00000288319.7:c.1295C>T	p.Ala432Val	p.A432V	ENST00000288319	NM_182918.3	432	gCg/gTg						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37618691	37618692	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0009556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	150	577	1	ENST00000447079.4:c.367_368del	p.Leu123LysfsTer3	p.L123Kfs*3	ENST00000447079	NM_015083.1	123	CTa/a						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37618979	37618982	+	stop_gained	Nonsense_Mutation	ONP	AGAT	AGAT	TGAG			P-0009556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	82	316	0	ENST00000447079.4:c.655_658delinsTGAG	p.Arg219_Ser220delinsTer	p.R219_S220delins*	ENST00000447079	NM_015083.1	219	AGATcc/TGAGcc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	137	340	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579415	7579415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	75	305	0	ENST00000269305.4:c.272G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tGg/tAg						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974732	21974732	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	160	235	0	ENST00000304494.5:c.95T>A	p.Leu32Gln	p.L32Q	ENST00000304494	NM_000077.4	32	cTg/cAg						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142254979	142254979	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	43	223	0	ENST00000350721.4:c.3790A>T	p.Ile1264Leu	p.I1264L	ENST00000350721	NM_001184.3	1264	Ata/Tta						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	127	286	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
SOX2	6657	MSKCC	GRCh37	3	181430425	181430425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1313	145	550	0	ENST00000325404.1:c.277G>A	p.Glu93Lys	p.E93K	ENST00000325404	NM_003106.3	93	Gag/Aag						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220494	1220494	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	143	412	0	ENST00000326873.7:c.587G>T	p.Gly196Val	p.G196V	ENST00000326873	NM_000455.4	196	gGc/gTc						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187630162	187630162	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	145	294	1	ENST00000441802.2:c.820G>T	p.Ala274Ser	p.A274S	ENST00000441802	NM_005245.3	274	Gca/Tca						NEWRECORD																																																																									
MRE11A	4361	MSKCC	GRCh37	11	94212842	94212842	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	60	328	0	ENST00000323929.3:c.400G>T	p.Gly134Trp	p.G134W	ENST00000323929	NM_005591.3	134	Ggg/Tgg						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602320	10602320	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	237	460	2	ENST00000171111.5:c.1258del	p.Val420SerfsTer38	p.V420Sfs*38	ENST00000171111	NM_203500.1	420	Gtc/tc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0009158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	242	352	1	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55948121	55948121	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0009158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	199	411	0	ENST00000263923.4:c.3848+2T>G		p.X1283_splice	ENST00000263923	NM_002253.2	1283							NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151945089	151945089	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	22	128	0	ENST00000262189.6:c.2430C>A	p.Asn810Lys	p.N810K	ENST00000262189	NM_170606.2	810	aaC/aaA						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49421894	49421894	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	260	375	0	ENST00000301067.7:c.14413G>T	p.Glu4805Ter	p.E4805*	ENST00000301067	NM_003482.3	4805	Gag/Tag						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32915170	32915170	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1114	349	874	1	ENST00000380152.3:c.6678A>T	p.Glu2226Asp	p.E2226D	ENST00000380152		2226	gaA/gaT						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	11984783	11984783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	137	280	0	ENST00000353533.5:c.329G>T	p.Arg110Leu	p.R110L	ENST00000353533	NM_003010.3	110	cGa/cTa						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11168992	11168992	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	285	455	2	ENST00000344626.4:c.4486G>T	p.Glu1496Ter	p.E1496*	ENST00000344626	NM_003072.3	1496	Gag/Tag						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9520225	9520225	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	231	448	0	ENST00000353224.5:c.2044G>T	p.Val682Leu	p.V682L	ENST00000353224	NM_177990.2	682	Gtg/Ttg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40747141	40747141	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0009158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	181	388	0	ENST00000373198.4:c.2942-1G>T		p.X981_splice	ENST00000373198	NM_133170.3	981							NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63411017	63411017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	262	316	1	ENST00000330258.3:c.2150G>A	p.Cys717Tyr	p.C717Y	ENST00000330258	NM_152424.3	717	tGc/tAc						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123220498	123220498	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	354	382	0	ENST00000218089.9:c.3155G>T	p.Gly1052Val	p.G1052V	ENST00000218089	NM_001042749.1	1052	gGt/gTt						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266134	41266136	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	438	321	1	ENST00000349496.5:c.133_135delTCT	p.Ser45del	p.S45del	ENST00000349496	NM_001904.3	44	cCTTct/cct						NEWRECORD																																																																									
STAT3	6774	MSKCC	GRCh37	17	40475061	40475063	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	526	558	0	ENST00000264657.5:c.1847_1849del	p.Glu616del	p.E616del	ENST00000264657	NM_139276.2	616	gAAGga/gga						NEWRECORD																																																																									
ARAF	369	MSKCC	GRCh37	X	47426120	47426120	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	568	524	0	ENST00000377045.4:c.640T>C	p.Ser214Pro	p.S214P	ENST00000377045	NM_001654.4	214	Tcc/Ccc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	294	287	0	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	267	247	1	ENST00000269305.4:c.365_366delTG	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70333991	70333993	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	84	239	2	ENST00000373644.4:c.1902_1904del	p.Val635del	p.V635del	ENST00000373644	NM_030625.2	632	tcTGTt/tct						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52439874	52439874	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	277	360	1	ENST00000460680.1:c.838C>T	p.Gln280Ter	p.Q280*	ENST00000460680	NM_004656.3	280	Cag/Tag						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63845621	63845621	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	340	269	0	ENST00000279873.7:c.1360G>C	p.Glu454Gln	p.E454Q	ENST00000279873	NM_032199.2	454	Gaa/Caa						NEWRECORD																																																																									
CDKN1B	1027	MSKCC	GRCh37	12	12870835	12870835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	195	137	0	ENST00000228872.4:c.62C>T	p.Ala21Val	p.A21V	ENST00000228872	NM_004064.3	21	gCg/gTg						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39629539	39629539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	225	382	0	ENST00000262039.4:c.2233C>T	p.His745Tyr	p.H745Y	ENST00000262039	NM_002647.2	745	Cac/Tac						NEWRECORD																																																																									
NFKBIA	4792	MSKCC	GRCh37	14	35871245	35871246	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1225	918	498	0	ENST00000216797.5:c.927_928del	p.Phe310TrpfsTer30	p.F310Wfs*30	ENST00000216797	NM_020529.2	309	gtGTtt/gttt						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65313265	65313267	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	456	609	0	ENST00000342505.4:c.1847_1849del	p.Lys616del	p.K616del	ENST00000342505	NM_002227.2	616	aAGAta/ata						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63845627	63845627	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	275	245	0	ENST00000279873.7:c.1366del	p.Glu456LysfsTer23	p.E456Kfs*23	ENST00000279873	NM_032199.2	456	Gaa/aa						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30691941	30691943	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	246	254	0	ENST00000359013.4:c.521_523del	p.Phe174del	p.F174del	ENST00000359013	NM_001024847.2	173	aTCTtc/atc						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30713896	30713899	+	frameshift_variant	Frame_Shift_Del	DEL	TCTG	TCTG	-			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	256	274	0	ENST00000359013.4:c.1301_1304delCTGT	p.Ser434TrpfsTer21	p.S434Wfs*21	ENST00000359013	NM_001024847.2	432	acTCTG/ac						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135772709	135772709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	228	653	1	ENST00000298552.3:c.2837G>A	p.Ser946Asn	p.S946N	ENST00000298552	NM_001162426.1	946	aGc/aAc						NEWRECORD																																																																									
BMPR1A	657	MSKCC	GRCh37	10	88649827	88649827	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	46	247	0	ENST00000372037.3:c.76C>G	p.Leu26Val	p.L26V	ENST00000372037	NM_004329.2	26	Ctg/Gtg						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53239624	53239624	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1367	173	623	0	ENST00000375401.3:c.1718C>G	p.Pro573Arg	p.P573R	ENST00000375401	NM_004187.3	573	cCc/cGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579469	7579476	+	frameshift_variant	Frame_Shift_Del	DEL	ACGGGGGG	ACGGGGGG	-			P-0009946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	74	338	0	ENST00000269305.4:c.211_218del	p.Pro71GlyfsTer75	p.P71Gfs*75	ENST00000269305	NM_001126112.2	71	CCCCCCGTg/g						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519886		P-0005198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	148	481	0	ENST00000349496.5:c.97T>C	p.Ser33Pro	p.S33P	ENST00000349496	NM_001904.3	33	Tct/Cct						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47040945	47040945	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	163	399	0	ENST00000329236.7:c.1241C>A	p.Ser414Ter	p.S414*	ENST00000329236	NM_001204466.1	414	tCg/tAg						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70357700	70357700	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	167	624	0	ENST00000374080.3:c.5952del	p.Val1985Ter	p.V1985*	ENST00000374080		1984	cTt/ct						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242467	55242486	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATCT	AATTAAGAGAAGCAACATCT	TC			P-0005198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	115	365	0	ENST00000275493.2:c.2237_2256delinsTC	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCT/gTC						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29679408	29679408	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	197	393	0	ENST00000358273.4:c.7591C>G	p.Gln2531Glu	p.Q2531E	ENST00000358273	NM_001042492.2	2531	Cag/Gag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178922364	178922364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	393	382	0	ENST00000263967.3:c.1133G>T	p.Cys378Phe	p.C378F	ENST00000263967	NM_006218.2	378	tGt/tTt						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2134230	2134230	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs148527903		P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	163	377	2	ENST00000219476.3:c.4007C>T	p.Ser1336Leu	p.S1336L	ENST00000219476	NM_000548.3	1336	tCg/tTg						NEWRECORD																																																																									
FGFR4	2264	MSKCC	GRCh37	5	176522416	176522416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	196	321	0	ENST00000292408.4:c.1605C>A	p.Asn535Lys	p.N535K	ENST00000292408	NM_213647.1	535	aaC/aaA						NEWRECORD																																																																									
MPL	4352	MSKCC	GRCh37	1	43814569	43814569	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	162	403	0	ENST00000372470.3:c.1364C>G	p.Ser455Cys	p.S455C	ENST00000372470	NM_005373.2	455	tCt/tGt						NEWRECORD																																																																									
RFWD2	64326	MSKCC	GRCh37	1	176175942	176175942	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs964768927		P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	12	23	0	ENST00000367669.3:c.173C>T	p.Ser58Leu	p.S58L	ENST00000367669	NM_022457.5	58	tCg/tTg						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25466805	25466805	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	429	435	0	ENST00000264709.3:c.1898C>A	p.Pro633His	p.P633H	ENST00000264709	NM_175629.2	633	cCc/cAc						NEWRECORD																																																																									
PMS1	5378	MSKCC	GRCh37	2	190728766	190728766	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	133	305	0	ENST00000441310.2:c.2154A>C	p.Leu718Phe	p.L718F	ENST00000441310	NM_000534.4	718	ttA/ttC						NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209106780	209106780	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	180	455	1	ENST00000345146.2:c.788G>T	p.Gly263Val	p.G263V	ENST00000345146	NM_005896.2	263	gGa/gTa						NEWRECORD																																																																									
PIK3CB	5291	MSKCC	GRCh37	3	138409908	138409908	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1674	218	469	0	ENST00000289153.2:c.1970C>G	p.Ser657Cys	p.S657C	ENST00000289153	NM_006219.2	657	tCt/tGt						NEWRECORD																																																																									
PIK3CB	5291	MSKCC	GRCh37	3	138423286	138423286	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1501	201	497	0	ENST00000289153.2:c.1580C>T	p.Ser527Leu	p.S527L	ENST00000289153	NM_006219.2	527	tCa/tTa						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142226829	142226829	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	183	424	0	ENST00000350721.4:c.4975G>T	p.Glu1659Ter	p.E1659*	ENST00000350721	NM_001184.3	1659	Gaa/Taa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187629511	187629511	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	175	390	0	ENST00000441802.2:c.1471G>C	p.Asp491His	p.D491H	ENST00000441802	NM_005245.3	491	Gat/Cat						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56178610	56178610	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	319	333	0	ENST00000399503.3:c.3583A>G	p.Met1195Val	p.M1195V	ENST00000399503	NM_005921.1	1195	Atg/Gtg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174929	112174929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	166	344	0	ENST00000257430.4:c.3638C>T	p.Ser1213Leu	p.S1213L	ENST00000257430	NM_000038.5	1213	tCa/tTa						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30672780	30672780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1276	274	565	0	ENST00000376406.3:c.4180G>A	p.Gly1394Arg	p.G1394R	ENST00000376406	NM_014641.2	1394	Gga/Aga						NEWRECORD																																																																									
IFNGR1	3459	MSKCC	GRCh37	6	137519599	137519599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	217	533	1	ENST00000367739.4:c.1039G>A	p.Glu347Lys	p.E347K	ENST00000367739	NM_000416.2	347	Gaa/Aaa						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50467924	50467924	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	106	289	0	ENST00000331340.3:c.1159G>C	p.Glu387Gln	p.E387Q	ENST00000331340	NM_006060.4	387	Gag/Cag						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508841	106508841	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	164	368	0	ENST00000359195.3:c.835G>C	p.Glu279Gln	p.E279Q	ENST00000359195	NM_002649.2	279	Gag/Cag						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151871283	151871283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	203	422	0	ENST00000262189.6:c.9307G>A	p.Ala3103Thr	p.A3103T	ENST00000262189	NM_170606.2	3103	Gcc/Acc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151878871	151878871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	188	349	0	ENST00000262189.6:c.6074C>T	p.Ser2025Leu	p.S2025L	ENST00000262189	NM_170606.2	2025	tCa/tTa						NEWRECORD																																																																									
SYK	6850	MSKCC	GRCh37	9	93606202	93606202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	135	343	0	ENST00000375746.1:c.22G>A	p.Asp8Asn	p.D8N	ENST00000375746	NM_001174167.1	8	Gac/Aac						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133753929	133753929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	165	377	1	ENST00000318560.5:c.1398G>C	p.Glu466Asp	p.E466D	ENST00000318560	NM_005157.4	466	gaG/gaC						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133760670	133760670	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	218	423	1	ENST00000318560.5:c.2993C>T	p.Ser998Phe	p.S998F	ENST00000318560	NM_005157.4	998	tCt/tTt						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135772611	135772611	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	292	682	0	ENST00000298552.3:c.2935G>C	p.Glu979Gln	p.E979Q	ENST00000298552	NM_001162426.1	979	Gaa/Caa						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43620362	43620362	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	148	277	0	ENST00000355710.3:c.2971G>T	p.Glu991Ter	p.E991*	ENST00000355710	NM_020975.4	991	Gag/Tag						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64577476	64577476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	179	438	0	ENST00000337652.1:c.106C>T	p.Leu36Phe	p.L36F	ENST00000337652	NM_130803.2	36	Ctc/Ttc						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108173658	108173658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	147	385	0	ENST00000278616.4:c.5398G>A	p.Glu1800Lys	p.E1800K	ENST00000278616	NM_000051.3	1800	Gaa/Aaa						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118375233	118375233	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	168	385	0	ENST00000534358.1:c.8626G>C	p.Glu2876Gln	p.E2876Q	ENST00000534358	NM_005933.3	2876	Gaa/Caa						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46254641	46254641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	189	503	1	ENST00000334344.6:c.4831C>A	p.Gln1611Lys	p.Q1611K	ENST00000334344	NM_152641.2	1611	Cag/Aag						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57864313	57864313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1361	255	592	1	ENST00000228682.2:c.1790G>A	p.Arg597Lys	p.R597K	ENST00000228682	NM_005269.2	597	aGa/aAa						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28971181	28971181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	136	349	0	ENST00000282397.4:c.1576G>A	p.Asp526Asn	p.D526N	ENST00000282397	NM_002019.4	526	Gac/Aac						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	41961099	41961099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	189	481	0	ENST00000219905.7:c.7G>A	p.Glu3Lys	p.E3K	ENST00000219905	NM_001164273.1	3	Gag/Aag						NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14029338	14029338	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150291286		P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	241	481	0	ENST00000311895.7:c.1549G>A	p.Glu517Lys	p.E517K	ENST00000311895	NM_005236.2	517	Gaa/Aaa						NEWRECORD																																																																									
FLCN	201163	MSKCC	GRCh37	17	17122397	17122397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	199	500	0	ENST00000285071.4:c.998C>T	p.Ser333Leu	p.S333L	ENST00000285071	NM_144997.5	333	tCa/tTa						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29553697	29553697	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	129	281	0	ENST00000358273.4:c.2246C>G	p.Ser749Ter	p.S749*	ENST00000358273	NM_001042492.2	749	tCa/tGa						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29679291	29679291	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	176	414	0	ENST00000358273.4:c.7474C>T	p.Gln2492Ter	p.Q2492*	ENST00000358273	NM_001042492.2	2492	Cag/Tag						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2222277	2222277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	175	372	0	ENST00000398665.3:c.3109C>T	p.Pro1037Ser	p.P1037S	ENST00000398665	NM_032482.2	1037	Cct/Tct						NEWRECORD																																																																									
ERG	2078	MSKCC	GRCh37	21	39764328	39764328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	143	330	0	ENST00000288319.7:c.784G>A	p.Gly262Ser	p.G262S	ENST00000288319	NM_182918.3	262	Ggt/Agt						NEWRECORD																																																																									
ERG	2078	MSKCC	GRCh37	21	39817464	39817464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	212	436	0	ENST00000288319.7:c.99G>A	p.Met33Ile	p.M33I	ENST00000288319	NM_182918.3	33	atG/atA						NEWRECORD																																																																									
MAPK1	5594	MSKCC	GRCh37	22	22221638	22221638	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	82	164	0	ENST00000215832.6:c.93C>G	p.Ile31Met	p.I31M	ENST00000215832	NM_002745.4	31	atC/atG						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76938499	76938499	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	182	417	1	ENST00000373344.5:c.2249C>A	p.Ser750Ter	p.S750*	ENST00000373344	NM_000489.3	750	tCa/tAa						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123179161	123179161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	227	453	0	ENST00000218089.9:c.610C>T	p.Leu204Phe	p.L204F	ENST00000218089	NM_001042749.1	204	Ctt/Ttt						NEWRECORD																																																																									
SH2D1A	4068	MSKCC	GRCh37	X	123499661	123499661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	245	583	0	ENST00000371139.4:c.188C>T	p.Ser63Phe	p.S63F	ENST00000371139	NM_001114937.2	63	tCt/tTt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27100903	27100915	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGCAGGGGCAG	TGGGCAGGGGCAG	-			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	180	448	0	ENST00000324856.7:c.4185_4197del	p.Gly1396LeufsTer81	p.G1396Lfs*81	ENST00000324856	NM_006015.4	1395	acTGGGCAGGGGCAG/ac						NEWRECORD																																																																									
RFWD2	64326	MSKCC	GRCh37	1	175958520	175958521	+	missense_variant	Missense_Mutation	DNP	TC	TC	CA			P-0009602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1645	184	484	0	ENST00000367669.3:c.1824_1825delinsTG	p.Ser609Gly	p.S609G	ENST00000367669	NM_022457.5	608	gtGAgt/gtTGgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0009339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	572	404	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29443695	29443695	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs863225281		P-0009339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	124	249	0	ENST00000389048.3:c.3522C>G	p.Phe1174Leu	p.F1174L	ENST00000389048	NM_004304.4	1174	ttC/ttG						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0008920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	216	249	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931588		P-0008920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	371	421	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115110035	115110035	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	223	349	0	ENST00000257566.3:c.1843T>G	p.Ser615Ala	p.S615A	ENST00000257566	NM_016569.3	615	Tcc/Gcc						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061231	38061231	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	873	420	0	ENST00000250448.2:c.758T>G	p.Met253Arg	p.M253R	ENST00000250448	NM_004496.3	253	aTg/aGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0007315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	223	554	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174814	112174814	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	176	465	0	ENST00000257430.4:c.3523C>T	p.Gln1175Ter	p.Q1175*	ENST00000257430	NM_000038.5	1175	Cag/Tag						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117708054	117708054	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	143	459	1	ENST00000368508.3:c.2123C>T	p.Ser708Leu	p.S708L	ENST00000368508	NM_002944.2	708	tCa/tTa						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3807902	3807902	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	102	479	2	ENST00000262367.5:c.3517C>T	p.Arg1173Ter	p.R1173*	ENST00000262367	NM_004380.2	1173	Cga/Tga						NEWRECORD																																																																									
ETV1	2115	MSKCC	GRCh37	7	14028655	14028655	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	37	389	0	ENST00000405192.2:c.23A>T	p.Gln8Leu	p.Q8L	ENST00000405192	NM_001163147.1	8	cAa/cTa						NEWRECORD																																																																									
RAD21	5885	MSKCC	GRCh37	8	117868419	117868419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	203	535	0	ENST00000297338.2:c.923C>T	p.Pro308Leu	p.P308L	ENST00000297338	NM_006265.2	308	cCt/cTt						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8100358	8100358	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	63	576	0	ENST00000346208.3:c.332C>A	p.Pro111His	p.P111H	ENST00000346208		111	cCc/cAc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220699	1220699	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	78	453	0	ENST00000326873.7:c.717G>T	p.Trp239Cys	p.W239C	ENST00000326873	NM_000455.4	239	tgG/tgT						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610321	10610321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	80	514	1	ENST00000171111.5:c.389C>T	p.Pro130Leu	p.P130L	ENST00000171111	NM_203500.1	130	cCc/cTc						NEWRECORD																																																																									
IGF1	3479	MSKCC	GRCh37	12	102811726	102811726	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	100	457	0	ENST00000307046.8:c.458del	p.Pro153GlnfsTer49	p.P153Qfs*49	ENST00000307046	NM_001111285.1	153	cCa/ca						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108165746	108165751	+	inframe_deletion	In_Frame_Del	DEL	ACATAA	ACATAA	-			P-0004858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	67	438	0	ENST00000278616.4:c.4870_4875del	p.His1624_Lys1625del	p.H1624_K1625del	ENST00000278616	NM_000051.3	1623	ctACATAAa/cta						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0008338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	136	266	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151877996	151877996	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	141	387	0	ENST00000262189.6:c.6949C>T	p.Gln2317Ter	p.Q2317*	ENST00000262189	NM_170606.2	2317	Caa/Taa						NEWRECORD																																																																									
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0008338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	167	326	0	ENST00000412916.2:c.165+1G>T		p.X55_splice	ENST00000412916		55							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003941-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	107	302	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003941-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	301	691	0	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508404	106508404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003941-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			308	70	265	0	ENST00000359195.3:c.398G>A	p.Gly133Asp	p.G133D	ENST00000359195	NM_002649.2	133	gGc/gAc						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49435051	49435051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	79	241	0	ENST00000301067.7:c.6502C>T	p.Pro2168Ser	p.P2168S	ENST00000301067	NM_003482.3	2168	Ccc/Tcc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0006314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	108	270	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0006314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	34	415	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176618906	176618906	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	94	366	0	ENST00000439151.2:c.949A>G	p.Thr317Ala	p.T317A	ENST00000439151	NM_022455.4	317	Acg/Gcg						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72991910	72991910	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1078	69	453	0	ENST00000268489.5:c.2135G>T	p.Arg712Leu	p.R712L	ENST00000268489	NM_006885.3	712	cGg/cTg						NEWRECORD																																																																									
SUZ12	23512	MSKCC	GRCh37	17	30323856	30323856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	69	375	0	ENST00000322652.5:c.1834G>A	p.Glu612Lys	p.E612K	ENST00000322652	NM_015355.2	612	Gaa/Aaa						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40713367	40713367	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	98	296	0	ENST00000373198.4:c.4148A>T	p.Gln1383Leu	p.Q1383L	ENST00000373198	NM_133170.3	1383	cAg/cTg						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41573790	41573790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	100	366	0	ENST00000263253.7:c.6075G>T	p.Leu2025Phe	p.L2025F	ENST00000263253	NM_001429.3	2025	ttG/ttT						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76938428	76938428	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	18	203	0	ENST00000373344.5:c.2320del	p.Asp774MetfsTer29	p.D774Mfs*29	ENST00000373344	NM_000489.3	774	Gat/at						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	64	378	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	93969071	93969071	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0009789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	65	482	0	ENST00000369303.4:c.1924+1G>C		p.X642_splice	ENST00000369303	NM_004440.3	642							NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49426489	49426489	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1104	115	559	0	ENST00000301067.7:c.11999G>T	p.Gly4000Val	p.G4000V	ENST00000301067	NM_003482.3	4000	gGc/gTc						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42019560	42019560	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	104	593	0	ENST00000219905.7:c.3613G>T	p.Gly1205Ter	p.G1205*	ENST00000219905	NM_001164273.1	1205	Gga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578509	7578509	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	53	410	0	ENST00000269305.4:c.421T>C	p.Cys141Arg	p.C141R	ENST00000269305	NM_001126112.2	141	Tgc/Cgc						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17952519	17952520	+	missense_variant	Missense_Mutation	DNP	TG	TG	AC			P-0009789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	57	367	0	ENST00000458235.1:c.913_914delinsGT	p.Gln305Val	p.Q305V	ENST00000458235	NM_000215.3	305	CAg/GTg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	23	198	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0005120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	17	179	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa						NEWRECORD																																																																									
NPM1	4869	MSKCC	GRCh37	5	170819820	170819820	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0005120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	56	518	0	ENST00000296930.5:c.459G>T	p.Gln153His	p.Q153H	ENST00000296930	NM_002520.6	153	caG/caT						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152415547	152415547	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	148	502	0	ENST00000206249.3:c.1397T>A	p.Leu466Gln	p.L466Q	ENST00000206249	NM_000125.3	466	cTg/cAg						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68856050	68856050	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	103	489	1	ENST00000261769.5:c.1859delC	p.Pro620LeufsTer11	p.P620Lfs*11	ENST00000261769	NM_004360.3	620	Cct/ct						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0005011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	42	219	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	52	232	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0005011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	94	258	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63810716	63810716	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	35	222	0	ENST00000279873.7:c.803T>C	p.Val268Ala	p.V268A	ENST00000279873	NM_032199.2	268	gTt/gCt						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99454671	99454671	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0005011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	46	217	0	ENST00000268035.6:c.1589+1G>A		p.X530_splice	ENST00000268035	NM_000875.3	530							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	307	420	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
ERCC3	2071	MSKCC	GRCh37	2	128036912	128036912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	346	654	0	ENST00000285398.2:c.1567G>A	p.Val523Met	p.V523M	ENST00000285398	NM_000122.1	523	Gtg/Atg						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	279	431	0	ENST00000397062.3:c.92G>C	p.Gly31Ala	p.G31A	ENST00000397062	NM_006164.4	31	gGa/gCa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577112	7577112	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	314	687	0	ENST00000269305.4:c.826G>C	p.Ala276Pro	p.A276P	ENST00000269305	NM_001126112.2	276	Gcc/Ccc						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115258681	115258681	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	219	362	0	ENST00000369535.4:c.101C>G	p.Pro34Arg	p.P34R	ENST00000369535	NM_002524.4	34	cCc/cGc						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120465043	120465043	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	98	423	0	ENST00000256646.2:c.5029C>T	p.Gln1677Ter	p.Q1677*	ENST00000256646	NM_024408.3	1677	Cag/Tag						NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209104698	209104698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	219	414	1	ENST00000345146.2:c.880G>T	p.Val294Leu	p.V294L	ENST00000345146	NM_005896.2	294	Gtg/Ttg						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47155400	47155400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	341	706	0	ENST00000409792.3:c.4681G>A	p.Gly1561Ser	p.G1561S	ENST00000409792	NM_014159.6	1561	Ggc/Agc						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128852291	128852291	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	164	323	0	ENST00000249373.3:c.2363G>C	p.Ter788SerextTer38	p.*788Sext*38	ENST00000249373	NM_005631.4	788	tGa/tCa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8518264	8518264	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	128	479	0	ENST00000356435.5:c.1127C>G	p.Thr376Arg	p.T376R	ENST00000356435		376	aCa/aGa						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135776220	135776220	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	242	438	0	ENST00000298552.3:c.2507C>G	p.Ser836Ter	p.S836*	ENST00000298552	NM_001162426.1	836	tCa/tGa						NEWRECORD																																																																									
BMPR1A	657	MSKCC	GRCh37	10	88659584	88659584	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	179	510	0	ENST00000372037.3:c.367G>C	p.Glu123Gln	p.E123Q	ENST00000372037	NM_004329.2	123	Gaa/Caa						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118344561	118344561	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	507	1180	0	ENST00000534358.1:c.2687G>C	p.Gly896Ala	p.G896A	ENST00000534358	NM_005933.3	896	gGa/gCa						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49433004	49433004	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	205	428	0	ENST00000301067.7:c.8366+1G>T		p.X2789_splice	ENST00000301067	NM_003482.3	2789							NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49445026	49445026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	82	225	0	ENST00000301067.7:c.2440C>T	p.His814Tyr	p.H814Y	ENST00000301067	NM_003482.3	814	Cac/Tac						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88678547	88678547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	66	344	0	ENST00000360948.2:c.989C>A	p.Pro330Gln	p.P330Q	ENST00000360948	NM_001012338.2	330	cCa/cAa						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23641726	23641726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	361	625	0	ENST00000261584.4:c.1749G>T	p.Leu583Phe	p.L583F	ENST00000261584	NM_024675.3	583	ttG/ttT						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72821373	72821373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	101	649	3	ENST00000268489.5:c.10802C>T	p.Ser3601Leu	p.S3601L	ENST00000268489	NM_006885.3	3601	tCg/tTg						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41245006	41245006	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	336	633	1	ENST00000357654.3:c.2542G>T	p.Glu848Ter	p.E848*	ENST00000357654	NM_007294.3	848	Gaa/Taa						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59876540	59876540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	324	450	0	ENST00000259008.2:c.1261G>A	p.Glu421Lys	p.E421K	ENST00000259008	NM_032043.2	421	Gaa/Aaa						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11105642	11105642	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	187	461	0	ENST00000344626.4:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000344626	NM_003072.3	520	Gag/Tag						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9561012	9561012	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	211	494	0	ENST00000353224.5:c.770G>T	p.Trp257Leu	p.W257L	ENST00000353224	NM_177990.2	257	tGg/tTg						NEWRECORD																																																																									
EIF1AX	1964	MSKCC	GRCh37	X	20148659	20148659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	163	256	0	ENST00000379607.5:c.404G>A	p.Gly135Glu	p.G135E	ENST00000379607	NM_001412.3	135	gGa/gAa						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44929162	44929162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	195	331	0	ENST00000377967.4:c.2262G>A	p.Met754Ile	p.M754I	ENST00000377967	NM_021140.2	754	atG/atA						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0008204-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	41	457	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008204-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	27	371	0	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	231	497	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0009000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	236	342	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114710666	114710666	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1521	325	763	2	ENST00000543371.1:c.151G>T	p.Glu51Ter	p.E51*	ENST00000543371	NM_001198531.1	51	Gaa/Taa						NEWRECORD																																																																									
HIST1H3C	8352	MSKCC	GRCh37	6	26045684	26045684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2032	252	907	0	ENST00000540144.1:c.46G>A	p.Ala16Thr	p.A16T	ENST00000540144	NM_003531.2	16	Gct/Act						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151866325	151866325	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	127	463	0	ENST00000262189.6:c.9463A>G	p.Ile3155Val	p.I3155V	ENST00000262189	NM_170606.2	3155	Ata/Gta						NEWRECORD																																																																									
RAD51C	5889	MSKCC	GRCh37	17	56772438	56772438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	104	592	0	ENST00000337432.4:c.292G>A	p.Gly98Ser	p.G98S	ENST00000337432	NM_058216.2	98	Ggc/Agc						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32911856	32911856	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	58	616	0	ENST00000380152.3:c.3365del	p.Gly1122GlufsTer28	p.G1122Efs*28	ENST00000380152		1122	Gga/ga						NEWRECORD																																																																									
TMPRSS2	7113	MSKCC	GRCh37	21	42866242	42866281	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CCCGGGTTTATTACAGGAAATAAACACAAAGAGAATCCTA	CCCGGGTTTATTACAGGAAATAAACACAAAGAGAATCCTA	-			P-0009546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	16	129	0	ENST00000398585.3:c.349+2_349+41del		p.X117_splice	ENST00000398585	NM_001135099.1	117							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	88	412	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238758086		P-0004956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	191	643	0	ENST00000358026.2:c.2729C>T	p.Thr910Met	p.T910M	ENST00000358026	NM_001128849.1	910	aCg/aTg						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72993077	72993077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1439	413	1015	2	ENST00000268489.5:c.968C>T	p.Ser323Phe	p.S323F	ENST00000268489	NM_006885.3	323	tCc/tTc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	401	398	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0007838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	159	339	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc						NEWRECORD																																																																									
HLA-A	3105	MSKCC	GRCh37	6	29910333	29910333	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0007838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	83	548	0	ENST00000376809.5:c.3G>T	p.Met1?	p.M1?	ENST00000376809	NM_002116.7	1	atG/atT						NEWRECORD																																																																									
FOXO1	2308	MSKCC	GRCh37	13	41133845	41133845	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1205	161	659	0	ENST00000379561.5:c.1783C>T	p.Gln595Ter	p.Q595*	ENST00000379561	NM_002015.3	595	Cag/Tag						NEWRECORD																																																																									
BBC3	27113	MSKCC	GRCh37	19	47729820	47729820	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0007838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	159	408	0	ENST00000449228.1:c.568+1G>A		p.X190_splice	ENST00000449228	NM_001127240.2	190							NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89871723	89872081	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGGATGCTTCCATCTGTTCACAAAGGCAGCACAGATTCCTGAAGAGCCACGATCCCACAGCATGCATGTCGGGATGGCTGGAGACACACACAGAGGCAGACGTAAGGCTCAACTAAATCCCATCATCAGGGGATTGAGTTGAGCCATATGTCCCAATTTTTTTTTTGAGACAGTTTTTTGCTGTCACTGAGGCTGGAGTGCAGTGGCGCAATCAGTCACTGCACCCTCGACCTCCCAGGCTCAAGCAATCCTTCCACCTCAGCCTCCTGAGTAGTTGGGACAACAGGCGCATACCACCACGCCCAGCTGGAGGTCTTACTACTTTGCCCAGGCTGGACTCAAACTCCCGGGCTCAAAA	CAGGATGCTTCCATCTGTTCACAAAGGCAGCACAGATTCCTGAAGAGCCACGATCCCACAGCATGCATGTCGGGATGGCTGGAGACACACACAGAGGCAGACGTAAGGCTCAACTAAATCCCATCATCAGGGGATTGAGTTGAGCCATATGTCCCAATTTTTTTTTTGAGACAGTTTTTTGCTGTCACTGAGGCTGGAGTGCAGTGGCGCAATCAGTCACTGCACCCTCGACCTCCCAGGCTCAAGCAATCCTTCCACCTCAGCCTCCTGAGTAGTTGGGACAACAGGCGCATACCACCACGCCCAGCTGGAGGTCTTACTACTTTGCCCAGGCTGGACTCAAACTCCCGGGCTCAAAA	-			P-0007838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	43	466	1	ENST00000389301.3:c.597-281_674del		p.X199_splice	ENST00000389301	NM_000135.2	199							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	264	480	0	ENST00000269305.4:c.808T>G	p.Phe270Val	p.F270V	ENST00000269305	NM_001126112.2	270	Ttt/Gtt						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37880219	37880220	+	missense_variant	Missense_Mutation	DNP	TT	TT	GC			P-0007054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	240	604	1	ENST00000269571.5:c.2263_2264delinsGC	p.Leu755Ala	p.L755A	ENST00000269571		755	TTg/GCg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0008167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	18	274	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0008167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	110	308	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0008167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	46	338	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	198	441	1	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100962529	100962529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	100	693	2	ENST00000325455.5:c.1868G>A	p.Arg623His	p.R623H	ENST00000325455	NM_001202474.3	623	cGc/cAc						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41525989	41525989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	59	452	0	ENST00000263253.7:c.1264G>A	p.Asp422Asn	p.D422N	ENST00000263253	NM_001429.3	422	Gat/Aat						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	272	605	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519922		P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	369	829	0	ENST00000397062.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000397062	NM_006164.4	79	Gag/Aag						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27088788	27088788	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	192	786	0	ENST00000324856.7:c.2397G>T	p.Gln799His	p.Q799H	ENST00000324856	NM_006015.4	799	caG/caT						NEWRECORD																																																																									
CUL3	8452	MSKCC	GRCh37	2	225376262	225376262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	151	478	0	ENST00000264414.4:c.692C>T	p.Ser231Leu	p.S231L	ENST00000264414	NM_003590.4	231	tCa/tTa						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52702594	52702594	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	345	617	0	ENST00000394830.3:c.304A>G	p.Lys102Glu	p.K102E	ENST00000394830	NM_018313.4	102	Aaa/Gaa						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56167747	56167747	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	222	649	2	ENST00000399503.3:c.1312G>T	p.Glu438Ter	p.E438*	ENST00000399503	NM_005921.1	438	Gaa/Taa						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67576505	67576505	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	234	586	0	ENST00000274335.5:c.784A>G	p.Arg262Gly	p.R262G	ENST00000274335		262	Aga/Gga						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67589273	67589273	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	105	468	0	ENST00000274335.5:c.1261G>T	p.Asp421Tyr	p.D421Y	ENST00000274335		421	Gat/Tat						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2963973	2963973	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	272	917	0	ENST00000396946.4:c.1834G>T	p.Gly612Ter	p.G612*	ENST00000396946	NM_032415.4	612	Gga/Tga						NEWRECORD																																																																									
CDK8	1024	MSKCC	GRCh37	13	26911754	26911754	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	418	862	0	ENST00000381527.3:c.179C>G	p.Ser60Cys	p.S60C	ENST00000381527	NM_001260.1	60	tCt/tGt						NEWRECORD																																																																									
MALT1	10892	MSKCC	GRCh37	18	56348481	56348481	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	527	1153	1	ENST00000348428.3:c.289G>T	p.Gly97Cys	p.G97C	ENST00000348428	NM_006785.3	97	Ggt/Tgt						NEWRECORD																																																																									
TCF3	6929	MSKCC	GRCh37	19	1646417	1646417	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	347	747	0	ENST00000344749.5:c.82C>G	p.Leu28Val	p.L28V	ENST00000344749	NM_001136139.2	28	Ctg/Gtg						NEWRECORD																																																																									
AURKA	6790	MSKCC	GRCh37	20	54961591	54961591	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	155	340	0	ENST00000312783.6:c.43-2A>C		p.X15_splice	ENST00000312783	NM_198436.1	15							NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29661997	29661997	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	293	646	2	ENST00000358273.4:c.5958del	p.Lys1986AsnfsTer26	p.K1986Nfs*26	ENST00000358273	NM_001042492.2	1985	gAa/ga						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0005467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	278	512	1	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	150	348	0				ENST00000310581	NM_198253.2								NEWRECORD																																																																									
FGF3	2248	MSKCC	GRCh37	11	69625249	69625249	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781935233		P-0005459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	374	702	0	ENST00000334134.2:c.544G>A	p.Val182Met	p.V182M	ENST00000334134	NM_005247.2	182	Gtg/Atg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108117846	108117846	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	179	338	0	ENST00000278616.4:c.1057T>C	p.Cys353Arg	p.C353R	ENST00000278616	NM_000051.3	353	Tgt/Cgt						NEWRECORD																																																																									
STAT3	6774	MSKCC	GRCh37	17	40474431	40474431	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	503	940	0	ENST00000264657.5:c.1970A>G	p.Tyr657Cys	p.Y657C	ENST00000264657	NM_139276.2	657	tAt/tGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577409	7577572	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAAATCGGTAAGAGGTGGGCCCAGGGGTCAGAGGCAAGCAGAGGCTGGGGCACAGCAGGCCAGTGTGCAGGGTGGCAAGTGGCTCCTGACCTGGAGTCTTCCAGTGTGATGATGGTGAGGATGGGCCTCCGGTTCATGCCGCCCATGCAGGAACTGTTACACAT	GAAATCGGTAAGAGGTGGGCCCAGGGGTCAGAGGCAAGCAGAGGCTGGGGCACAGCAGGCCAGTGTGCAGGGTGGCAAGTGGCTCCTGACCTGGAGTCTTCCAGTGTGATGATGGTGAGGATGGGCCTCCGGTTCATGCCGCCCATGCAGGAACTGTTACACAT	-			P-0005459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			58	80	185	0	ENST00000269305.4:c.709_782+90del		p.X237_splice	ENST00000269305	NM_001126112.2	237							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0007357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	443	534	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332							NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133218844	133218844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	103	567	0	ENST00000320574.5:c.5092G>A	p.Glu1698Lys	p.E1698K	ENST00000320574	NM_006231.2	1698	Gag/Aag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	70	409	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga						NEWRECORD																																																																									
RPTOR	57521	MSKCC	GRCh37	17	78899272	78899272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	165	364	1	ENST00000306801.3:c.2911G>A	p.Val971Ile	p.V971I	ENST00000306801	NM_020761.2	971	Gtc/Atc						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106197530	106197530	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	157	682	0	ENST00000380013.4:c.5863G>T	p.Glu1955Ter	p.E1955*	ENST00000380013	NM_001127208.2	1955	Gag/Tag						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108158382	108158382	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781785		P-0007357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	223	546	1	ENST00000278616.4:c.4049C>T	p.Thr1350Met	p.T1350M	ENST00000278616	NM_000051.3	1350	aCg/aTg						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73355941	73355941	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	189	570	1	ENST00000377767.4:c.30G>T	p.Lys10Asn	p.K10N	ENST00000377767	NM_014953.3	10	aaG/aaT						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857275	9857275	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1426934537		P-0007357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	106	611	2	ENST00000330684.3:c.4126C>T	p.Arg1376Cys	p.R1376C	ENST00000330684	NM_001134407.1	1376	Cgc/Tgc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	27	310	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0008452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	159	290	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	164	277	0	ENST00000349496.5:c.100G>C	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Cga						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061249	38061249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	136	223	1	ENST00000250448.2:c.740A>G	p.His247Arg	p.H247R	ENST00000250448	NM_004496.3	247	cAc/cGc						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106509060	106509060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	127	357	0	ENST00000359195.3:c.1054G>A	p.Val352Met	p.V352M	ENST00000359195	NM_002649.2	352	Gtg/Atg						NEWRECORD																																																																									
MAP2K1	5604	MSKCC	GRCh37	15	66727451	66727451	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519729		P-0007234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	454	519	1	ENST00000307102.5:c.167A>C	p.Gln56Pro	p.Q56P	ENST00000307102	NM_002755.3	56	cAg/cCg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220622	1220622	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	934	392	3	ENST00000326873.7:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000326873	NM_000455.4	214	Cag/Tag						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70406220	70406220	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	368	412	0	ENST00000373644.4:c.3734A>T	p.Gln1245Leu	p.Q1245L	ENST00000373644	NM_030625.2	1245	cAg/cTg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49431428	49431428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	425	448	0	ENST00000301067.7:c.9711G>T	p.Glu3237Asp	p.E3237D	ENST00000301067	NM_003482.3	3237	gaG/gaT						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602620	10602692	+	frameshift_variant	Frame_Shift_Del	DEL	GGCAGGGCATCACCTGCGTGGGCTTGTGCAGGGTGAGCTCCTCGAAGATCTTGACCAGGTAGTCCTTGCAGCG	GGCAGGGCATCACCTGCGTGGGCTTGTGCAGGGTGAGCTCCTCGAAGATCTTGACCAGGTAGTCCTTGCAGCG	AGC			P-0007234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	609	367	0	ENST00000171111.5:c.886_958delinsGCT	p.Arg296AlafsTer9	p.R296Afs*9	ENST00000171111	NM_203500.1	296	CGCTGCAAGGACTACCTGGTCAAGATCTTCGAGGAGCTCACCCTGCACAAGCCCACGCAGGTGATGCCCTGCCgg/GCTgg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0009423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	345	389	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	200	322	0	ENST00000269305.4:c.487T>G	p.Tyr163Asp	p.Y163D	ENST00000269305	NM_001126112.2	163	Tac/Gac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0005097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	82	617	3	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331							NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12013737	12013737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	59	506	0	ENST00000353533.5:c.679C>G	p.His227Asp	p.H227D	ENST00000353533	NM_003010.3	227	Cac/Gac						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004702-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			530	22	419	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004702-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			304	12	188	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0004980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	26	477	2	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	202	399	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0006225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	488	559	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175595	112175595	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	400	544	0	ENST00000257430.4:c.4304del	p.Arg1435LysfsTer38	p.R1435Kfs*38	ENST00000257430	NM_000038.5	1435	aGa/aa						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120612013	120612014	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0006225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	19	63	1	ENST00000256646.2:c.7_8delinsTT	p.Ala3Phe	p.A3F	ENST00000256646	NM_024408.3	3	GCc/TTc						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100998492	100998492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	142	250	0	ENST00000325455.5:c.1310C>T	p.Ala437Val	p.A437V	ENST00000325455	NM_001202474.3	437	gCg/gTg						NEWRECORD																																																																									
SMARCD1	6602	MSKCC	GRCh37	12	50483983	50484303	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGCTAACTAGCTTCATCCCCTATACTTTGGTTCCCTGCAGCCTCCCCAGTTTAAATTAGACCCCCGCCTAGCTCGACTCCTGGGCATCCATACCCAGACTCGTCCAGTGATCATCCAAGCACTGTGGCAATATATTAAGACACATAAGCTCCAGGACCCTCACGAGCGGGAGTTTGTCATCTGTGACAAGTACCTGCAGCAGGTAAGTAATGGACCCATTCTTTTGCTAGAATCCATTAGAACACTAGTTATGCTCAAACTGCTAACCTCGTGCTTCTCCCCTTTGCTACAGATCTTTGAGTCTCAACGTATGAAGTTTT	CAGCTAACTAGCTTCATCCCCTATACTTTGGTTCCCTGCAGCCTCCCCAGTTTAAATTAGACCCCCGCCTAGCTCGACTCCTGGGCATCCATACCCAGACTCGTCCAGTGATCATCCAAGCACTGTGGCAATATATTAAGACACATAAGCTCCAGGACCCTCACGAGCGGGAGTTTGTCATCTGTGACAAGTACCTGCAGCAGGTAAGTAATGGACCCATTCTTTTGCTAGAATCCATTAGAACACTAGTTATGCTCAAACTGCTAACCTCGTGCTTCTCCCCTTTGCTACAGATCTTTGAGTCTCAACGTATGAAGTTTT	-			P-0006225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	61	214	0	ENST00000394963.4:c.874-38_1066del		p.X292_splice	ENST00000394963	NM_003076.4	292							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	231	250	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0005335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	202	333	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88678508	88678508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs183806623		P-0005335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	88	303	0	ENST00000360948.2:c.1028G>A	p.Arg343Gln	p.R343Q	ENST00000360948	NM_001012338.2	343	cGg/cAg						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120462059	120462059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	110	323	0	ENST00000256646.2:c.5657G>A	p.Arg1886His	p.R1886H	ENST00000256646	NM_024408.3	1886	cGc/cAc						NEWRECORD																																																																									
ERG	2078	MSKCC	GRCh37	21	39755660	39755660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	117	399	1	ENST00000288319.7:c.1105C>T	p.Leu369Phe	p.L369F	ENST00000288319	NM_182918.3	369	Ctc/Ttc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	205	344	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0008078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	594	332	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0008078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	199	250	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126							NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187540459	187540459	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0008078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	83	215	0	ENST00000441802.2:c.7281T>G	p.Tyr2427Ter	p.Y2427*	ENST00000441802	NM_005245.3	2427	taT/taG						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81954819	81954819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	254	489	1	ENST00000359376.3:c.2252C>T	p.Ser751Phe	p.S751F	ENST00000359376	NM_002661.3	751	tCc/tTc						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81954866	81954866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1476	380	597	2	ENST00000359376.3:c.2299C>T	p.Pro767Ser	p.P767S	ENST00000359376	NM_002661.3	767	Ccg/Tcg						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48941669	48941669	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	130	350	0	ENST00000267163.4:c.983del	p.Asn328IlefsTer4	p.N328Ifs*4	ENST00000267163	NM_000321.2	327	Aaa/aa						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	208	323	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0007686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	674	334	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0007686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	302	364	2	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga						NEWRECORD																																																																									
IKBKE	9641	MSKCC	GRCh37	1	206650063	206650063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1206	80	283	1	ENST00000367120.3:c.583C>A	p.Gln195Lys	p.Q195K	ENST00000367120	NM_014002.3	195	Caa/Aaa						NEWRECORD																																																																									
HIST1H3J	8356	MSKCC	GRCh37	6	27858566	27858566	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	275	491	0	ENST00000359303.2:c.5C>A	p.Ala2Asp	p.A2D	ENST00000359303	NM_003535.2	2	gCc/gAc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	145	429	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0006723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	186	717	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	96	443	0	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696716	47696716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	99	404	1	ENST00000347630.2:c.232G>A	p.Glu78Lys	p.E78K	ENST00000347630	NM_001007230.1	78	Gaa/Aaa						NEWRECORD																																																																									
MCL1	4170	MSKCC	GRCh37	1	150550806	150550806	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs142581495		P-0006723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	79	267	0	ENST00000369026.2:c.850G>C	p.Glu284Gln	p.E284Q	ENST00000369026	NM_021960.4	284	Gaa/Caa						NEWRECORD																																																																									
FGFR4	2264	MSKCC	GRCh37	5	176518761	176518761	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	76	410	0	ENST00000292408.4:c.679G>C	p.Glu227Gln	p.E227Q	ENST00000292408	NM_213647.1	227	Gag/Cag						NEWRECORD																																																																									
PNRC1	10957	MSKCC	GRCh37	6	89793517	89793517	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	88	308	0	ENST00000336032.3:c.586C>G	p.His196Asp	p.H196D	ENST00000336032	NM_006813.2	196	Cat/Gat						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91292938	91292938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	104	289	0	ENST00000355112.3:c.440C>T	p.Ser147Phe	p.S147F	ENST00000355112	NM_000057.2	147	tCt/tTt						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72827361	72827361	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	399	657	0	ENST00000268489.5:c.9220C>T	p.Gln3074Ter	p.Q3074*	ENST00000268489	NM_006885.3	3074	Cag/Tag						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68862165	68862165	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	241	447	0	ENST00000261769.5:c.2253del	p.Asn751LysfsTer19	p.N751Kfs*19	ENST00000261769	NM_004360.3	751	aaC/aa						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	133	598	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162724541	162724541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	260	631	4	ENST00000367921.3:c.313C>T	p.Arg105Cys	p.R105C	ENST00000367921	NM_006182.2	105	Cgc/Tgc						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	30143084	30143084	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	154	807	0	ENST00000389048.3:c.442G>T	p.Glu148Ter	p.E148*	ENST00000389048	NM_004304.4	148	Gag/Tag						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142188966	142188966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	352	742	1	ENST00000350721.4:c.6281G>T	p.Trp2094Leu	p.W2094L	ENST00000350721	NM_001184.3	2094	tGg/tTg						NEWRECORD																																																																									
FGFR4	2264	MSKCC	GRCh37	5	176520195	176520195	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	265	693	0	ENST00000292408.4:c.1114C>G	p.Leu372Val	p.L372V	ENST00000292408	NM_213647.1	372	Ctg/Gtg						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30680152	30680152	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	147	742	1	ENST00000376406.3:c.1567A>T	p.Thr523Ser	p.T523S	ENST00000376406	NM_014641.2	523	Aca/Tca						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32188811	32188811	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	132	622	0	ENST00000375023.3:c.743C>A	p.Thr248Asn	p.T248N	ENST00000375023	NM_004557.3	248	aCc/aAc						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	94120731	94120731	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	367	1075	0	ENST00000369303.4:c.320G>C	p.Arg107Thr	p.R107T	ENST00000369303	NM_004440.3	107	aGg/aCg						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2963873	2963873	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	113	790	0	ENST00000396946.4:c.1934T>C	p.Leu645Pro	p.L645P	ENST00000396946	NM_032415.4	645	cTg/cCg						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128845126	128845126	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	236	866	0	ENST00000249373.3:c.620A>T	p.Tyr207Phe	p.Y207F	ENST00000249373	NM_005631.4	207	tAc/tTc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151864349	151864349	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	299	741	0	ENST00000262189.6:c.9632C>G	p.Ala3211Gly	p.A3211G	ENST00000262189	NM_170606.2	3211	gCc/gGc						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118344135	118344135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	45	533	0	ENST00000534358.1:c.2261C>A	p.Ser754Tyr	p.S754Y	ENST00000534358	NM_005933.3	754	tCc/tAc						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42052623	42052623	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	458	1084	0	ENST00000219905.7:c.7294G>T	p.Glu2432Ter	p.E2432*	ENST00000219905	NM_001164273.1	2432	Gag/Tag						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15964940	15964940	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	327	861	1	ENST00000268712.3:c.5656G>T	p.Ala1886Ser	p.A1886S	ENST00000268712	NM_006311.3	1886	Gcc/Tcc						NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52705282	52705282	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	59	631	0	ENST00000322088.6:c.164T>G	p.Leu55Arg	p.L55R	ENST00000322088	NM_014225.5	55	cTt/cGt						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40727065	40727065	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	217	555	0	ENST00000373198.4:c.3899C>G	p.Ala1300Gly	p.A1300G	ENST00000373198	NM_133170.3	1300	gCc/gGc						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39932317	39932317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	178	1143	1	ENST00000378444.4:c.2282G>T	p.Arg761Leu	p.R761L	ENST00000378444	NM_001123385.1	761	cGg/cTg						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63410038	63410038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	253	824	0	ENST00000330258.3:c.3129C>A	p.Ser1043Arg	p.S1043R	ENST00000330258	NM_152424.3	1043	agC/agA						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66937366	66937366	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	228	991	0	ENST00000374690.3:c.2220C>A	p.Tyr740Ter	p.Y740*	ENST00000374690	NM_000044.3	740	taC/taA						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76909658	76909658	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	244	1014	1	ENST00000373344.5:c.4247A>G	p.Gln1416Arg	p.Q1416R	ENST00000373344	NM_000489.3	1416	cAg/cGg						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76937372	76937372	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	166	809	0	ENST00000373344.5:c.3376G>C	p.Asp1126His	p.D1126H	ENST00000373344	NM_000489.3	1126	Gat/Cat						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579433	7579433	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1064793279		P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	222	614	0	ENST00000269305.4:c.254del	p.Pro85LeufsTer38	p.P85Lfs*38	ENST00000269305	NM_001126112.2	85	cCt/ct						NEWRECORD																																																																									
HOXB13	10481	MSKCC	GRCh37	17	46805608	46805608	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1174	420	1219	0	ENST00000290295.7:c.348del	p.Glu118LysfsTer161	p.E118Kfs*161	ENST00000290295	NM_006361.5	116	gcC/gc						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5221018	5221018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	36	238	0	ENST00000357368.4:c.3448C>T	p.Pro1150Ser	p.P1150S	ENST00000357368	NM_002850.3	1150	Cct/Tct						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212295774	212295774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	48	354	1	ENST00000342788.4:c.2539C>T	p.Arg847Cys	p.R847C	ENST00000342788	NM_005235.2	847	Cgt/Tgt						NEWRECORD																																																																									
NKX2-1	7080	MSKCC	GRCh37	14	36988340	36988340	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	28	97	0	ENST00000354822.5:c.313del	p.Val105CysfsTer20	p.V105Cfs*20	ENST00000354822	NM_001079668.2	105	Gtg/tg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576924	7576928	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GTGCT	GTGCT	CC			P-0009963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	55	303	0	ENST00000269305.4:c.920-2_922delinsGG		p.X307_splice	ENST00000269305	NM_001126112.2	307							NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46230438	46230438	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	314	381	0	ENST00000334344.6:c.772G>T	p.Glu258Ter	p.E258*	ENST00000334344	NM_152641.2	258	Gaa/Taa						NEWRECORD																																																																									
ERCC3	2071	MSKCC	GRCh37	2	128036909	128036909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	238	540	0	ENST00000285398.2:c.1570G>A	p.Ala524Thr	p.A524T	ENST00000285398	NM_000122.1	524	Gca/Aca						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187530972	187530972	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	321	418	0	ENST00000441802.2:c.10051G>C	p.Glu3351Gln	p.E3351Q	ENST00000441802	NM_005245.3	3351	Gag/Cag						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41730035	41730035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	271	699	0	ENST00000242208.4:c.494A>G	p.Asn165Ser	p.N165S	ENST00000242208	NM_002192.2	165	aAc/aGc						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110435026	110435026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	59	150	0	ENST00000375856.3:c.3375G>T	p.Gln1125His	p.Q1125H	ENST00000375856	NM_003749.2	1125	caG/caT						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3807355	3807355	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	89	470	0	ENST00000262367.5:c.3632T>C	p.Leu1211Ser	p.L1211S	ENST00000262367	NM_004380.2	1211	tTg/tCg						NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14031657	14031657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	123	448	0	ENST00000311895.7:c.1846G>A	p.Glu616Lys	p.E616K	ENST00000311895	NM_005236.2	616	Gaa/Aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	159	318	0	ENST00000269305.4:c.394A>T	p.Lys132Ter	p.K132*	ENST00000269305	NM_001126112.2	132	Aag/Tag						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47030599	47030599	+	intron_variant	Intron	SNP	A	A	T			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	111	428	0	ENST00000329236.7:c.201+1702A>T		p.*67*	ENST00000329236	NM_001204466.1								NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47044850	47044850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	72	287	0	ENST00000329236.7:c.1942C>T	p.Arg648Ter	p.R648*	ENST00000329236	NM_001204466.1	648	Cga/Tga						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63410458	63410458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	126	632	0	ENST00000330258.3:c.2709G>T	p.Glu903Asp	p.E903D	ENST00000330258	NM_152424.3	903	gaG/gaT						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76938442	76938442	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	101	516	0	ENST00000373344.5:c.2306C>G	p.Thr769Ser	p.T769S	ENST00000373344	NM_000489.3	769	aCt/aGt						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8465633	8465634	+	stop_gained	Nonsense_Mutation	DNP	CA	CA	AT			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	114	484	0	ENST00000356435.5:c.3546_3547delinsAT	p.Tyr1182_Gly1183delinsTer	p.Y1182_G1183delins*	ENST00000356435		1182	taTGgg/taATgg						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39922862	39922862	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0008657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	246	238	0	ENST00000378444.4:c.3846del	p.Gly1283AlafsTer11	p.G1283Afs*11	ENST00000378444	NM_001123385.1	1282	caA/ca						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008576-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	43	264	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0008576-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	55	246	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87636286	87636286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008576-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	59	525	0	ENST00000277120.3:c.2451G>T	p.Lys817Asn	p.K817N	ENST00000277120		817	aaG/aaT						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139391706	139391706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008576-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	38	301	0	ENST00000277541.6:c.6485G>T	p.Ser2162Ile	p.S2162I	ENST00000277541	NM_017617.3	2162	aGc/aTc						NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14014033	14014033	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008576-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	47	248	0	ENST00000311895.7:c.11G>C	p.Gly4Ala	p.G4A	ENST00000311895	NM_005236.2	4	gGg/gCg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0008422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1145	155	590	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0005752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	113	338	0	ENST00000397752.3:c.3028+1G>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010							NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101891367	101891367	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	79	356	1	ENST00000374994.4:c.328G>T	p.Glu110Ter	p.E110*	ENST00000374994	NM_004612.2	110	Gaa/Taa						NEWRECORD																																																																									
BCL2	596	MSKCC	GRCh37	18	60985466	60985466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1387	81	798	0	ENST00000333681.4:c.434G>A	p.Gly145Glu	p.G145E	ENST00000333681		145	gGg/gAg						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123215358	123215358	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	144	313	1	ENST00000218089.9:c.2904A>T	p.Glu968Asp	p.E968D	ENST00000218089	NM_001042749.1	968	gaA/gaT						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	54	285	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PDCD1	5133	MSKCC	GRCh37	2	242795082	242795082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	47	328	0	ENST00000334409.5:c.127G>A	p.Val43Met	p.V43M	ENST00000334409	NM_005018.2	43	Gtg/Atg						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	41991139	41991139	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	60	458	0	ENST00000219905.7:c.2092G>A	p.Gly698Ser	p.G698S	ENST00000219905	NM_001164273.1	698	Ggt/Agt						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67482861	67482861	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	87	241	0	ENST00000327367.4:c.1265C>A	p.Ser422Tyr	p.S422Y	ENST00000327367	NM_005902.3	422	tCc/tAc						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39913529	39913542	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTCCCAAGTGCC	AAGTCCCAAGTGCC	-			P-0007494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	86	323	0	ENST00000378444.4:c.4786_4799del	p.Gly1596LeufsTer7	p.G1596Lfs*7	ENST00000378444	NM_001123385.1	1596	GGCACTTGGGACTTc/c						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48936995	48936995	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587778842		P-0005378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	612	718	1	ENST00000267163.4:c.763C>T	p.Arg255Ter	p.R255*	ENST00000267163	NM_000321.2	255	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	277	552	0	ENST00000269305.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000269305	NM_001126112.2	130	Ctc/Ttc						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149499590	149499590	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	611	983	1	ENST00000261799.4:c.2683G>T	p.Glu895Ter	p.E895*	ENST00000261799	NM_002609.3	895	Gag/Tag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55087043	55087043	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	181	464	0	ENST00000275493.2:c.73C>G	p.Leu25Val	p.L25V	ENST00000275493	NM_005228.3	25	Ctg/Gtg						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133729485	133729485	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	318	579	0	ENST00000318560.5:c.114G>C	p.Glu38Asp	p.E38D	ENST00000318560	NM_005157.4	38	gaG/gaC						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42795885	42795886	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	A			P-0005378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	259	795	3	ENST00000575354.2:c.2874_2875delinsA	p.Ser961AlafsTer6	p.S961Afs*6	ENST00000575354	NM_015125.3	958	caGCcc/caAcc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0009422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	148	298	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	137	89	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	246	176	0	ENST00000206249.3:c.1607T>A	p.Leu536His	p.L536H	ENST00000206249	NM_000125.3	536	cTc/cAc						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	551	227	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	535	192	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64572194	64572194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	345	241	1	ENST00000337652.1:c.1460G>T	p.Gly487Val	p.G487V	ENST00000337652	NM_130803.2	487	gGc/gTc						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108098425	108098425	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0008315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	295	273	0	ENST00000278616.4:c.72+2T>C		p.X24_splice	ENST00000278616	NM_000051.3	24							NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108124552	108124552	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	301	269	0	ENST00000278616.4:c.1914del	p.Asp639IlefsTer10	p.D639Ifs*10	ENST00000278616	NM_000051.3	637	cAa/ca						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0005343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	47	273	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0005343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	57	398	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0009920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	38	371	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0009920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	40	360	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70450906	70450906	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	39	280	0	ENST00000373644.4:c.5746C>G	p.Pro1916Ala	p.P1916A	ENST00000373644	NM_030625.2	1916	Cct/Gct						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18715636	18715636	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0009920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	47	283	0	ENST00000266497.5:c.3468-1G>T		p.X1156_splice	ENST00000266497		1156							NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39922984	39922984	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	59	532	0	ENST00000378444.4:c.3724C>A	p.Gln1242Lys	p.Q1242K	ENST00000378444	NM_001123385.1	1242	Cag/Aag						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37665972	37665972	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	327	615	0	ENST00000447079.4:c.2624T>A	p.Leu875Gln	p.L875Q	ENST00000447079	NM_015083.1	875	cTa/cAa						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37618533	37618539	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTGGA	TGGTGGA	-			P-0009908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	219	459	0	ENST00000447079.4:c.209_215del	p.Leu70CysfsTer20	p.L70Cfs*20	ENST00000447079	NM_015083.1	70	tTGGTGGAg/tg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	135	470	0	ENST00000269305.4:c.808T>C	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	Ttt/Ctt						NEWRECORD																																																																									
CDK4	1019	MSKCC	GRCh37	12	58144515	58144515	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	105	389	0	ENST00000257904.6:c.556C>G	p.Leu186Val	p.L186V	ENST00000257904	NM_000075.3	186	Ctt/Gtt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0005670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	149	442	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	90	275	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18524215	18524215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	90	510	2	ENST00000266497.5:c.1727C>T	p.Ala576Val	p.A576V	ENST00000266497		576	gCg/gTg						NEWRECORD																																																																									
MITF	4286	MSKCC	GRCh37	3	70008501	70008501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147148433		P-0005670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	57	349	0	ENST00000352241.4:c.1091G>A	p.Arg364His	p.R364H	ENST00000352241	NM_198159.2	364	cGc/cAc						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46205200	46205200	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0005670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	89	316	0	ENST00000334344.6:c.285-1G>C		p.X95_splice	ENST00000334344	NM_152641.2	95							NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	11984702	11984702	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	33	125	0	ENST00000353533.5:c.248C>A	p.Ser83Ter	p.S83*	ENST00000353533	NM_003010.3	83	tCa/tAa						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31395668	31395668	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	55	361	0	ENST00000328111.2:c.2521C>A	p.His841Asn	p.H841N	ENST00000328111	NM_006892.3	841	Cac/Aac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0009798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	498	368	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
CDK8	1024	MSKCC	GRCh37	13	26959351	26959351	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	409	238	0	ENST00000381527.3:c.518A>G	p.Asp173Gly	p.D173G	ENST00000381527	NM_001260.1	173	gAc/gGc						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11181368	11181368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	308	436	0	ENST00000361445.4:c.6868G>A	p.Ala2290Thr	p.A2290T	ENST00000361445	NM_004958.3	2290	Gcc/Acc						NEWRECORD																																																																									
NKX3-1	4824	MSKCC	GRCh37	8	23538913	23538913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	337	435	1	ENST00000380871.4:c.526C>T	p.Arg176Cys	p.R176C	ENST00000380871	NM_006167.3	176	Cgc/Tgc						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114903773	114903773	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	776	524	0	ENST00000543371.1:c.777G>A	p.Trp259Ter	p.W259*	ENST00000543371	NM_001198531.1	259	tgG/tgA						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72829302	72829302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	477	686	1	ENST00000268489.5:c.7279G>A	p.Asp2427Asn	p.D2427N	ENST00000268489	NM_006885.3	2427	Gat/Aat						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15303242	15303242	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	328	462	0	ENST00000263388.2:c.286T>A	p.Ser96Thr	p.S96T	ENST00000263388	NM_000435.2	96	Tca/Aca						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70342711	70342711	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	234	248	0	ENST00000374080.3:c.1472A>C	p.Lys491Thr	p.K491T	ENST00000374080		491	aAg/aCg						NEWRECORD																																																																									
TOP1	7150	MSKCC	GRCh37	20	39690040	39690051	+	inframe_deletion	In_Frame_Del	DEL	ATAAACACAAAG	ATAAACACAAAG	-			P-0009798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	50	185	0	ENST00000361337.2:c.79_90del	p.Lys27_Asp30del	p.K27_D30del	ENST00000361337	NM_003286.2	22	cATAAACACAAAGat/cat						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			57	120	564	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg						NEWRECORD																																																																									
PIK3CB	5291	MSKCC	GRCh37	3	138426036	138426036	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	365	319	0	ENST00000289153.2:c.1495A>G	p.Lys499Glu	p.K499E	ENST00000289153	NM_006219.2	499	Aaa/Gaa						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100998483	100998483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	47	165	0	ENST00000325455.5:c.1319C>T	p.Thr440Met	p.T440M	ENST00000325455	NM_001202474.3	440	aCg/aTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0005956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	275	458	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	279	326	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176721943	176721961	+	frameshift_variant	Frame_Shift_Del	DEL	ACCCCTGGCAAGCTGTTAA	ACCCCTGGCAAGCTGTTAA	-			P-0008448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	22	194	0	ENST00000439151.2:c.7575_7593del	p.Pro2526HisfsTer46	p.P2526Hfs*46	ENST00000439151	NM_022455.4	2525	gACCCCTGGCAAGCTGTTAAa/ga						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207077	1207077	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	234	606	0	ENST00000326873.7:c.169del	p.Glu57LysfsTer7	p.E57Kfs*7	ENST00000326873	NM_000455.4	55	ctG/ct						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27105819	27105819	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	113	535	0	ENST00000324856.7:c.5430C>G	p.Asp1810Glu	p.D1810E	ENST00000324856	NM_006015.4	1810	gaC/gaG						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187532671	187532671	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	185	502	0	ENST00000441802.2:c.9722A>T	p.Glu3241Val	p.E3241V	ENST00000441802	NM_005245.3	3241	gAg/gTg						NEWRECORD																																																																									
CBL	867	MSKCC	GRCh37	11	119146796	119146796	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	168	497	0	ENST00000264033.4:c.959A>G	p.His320Arg	p.H320R	ENST00000264033	NM_005188.3	320	cAc/cGc						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123181319	123181319	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	198	609	0	ENST00000218089.9:c.783T>A	p.Asn261Lys	p.N261K	ENST00000218089	NM_001042749.1	261	aaT/aaA						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	106	706	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009465-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	312	385	0	ENST00000269305.4:c.645T>G	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agG						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0009465-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	321	364	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101895021	101895021	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009465-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	202	246	0	ENST00000374994.4:c.574G>A	p.Gly192Ser	p.G192S	ENST00000374994	NM_004612.2	192	Ggt/Agt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49440408	49440408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009465-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	178	210	1	ENST00000301067.7:c.4402G>A	p.Gly1468Ser	p.G1468S	ENST00000301067	NM_003482.3	1468	Ggc/Agc						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44942730	44942730	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009465-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	323	223	0	ENST00000377967.4:c.3310A>C	p.Thr1104Pro	p.T1104P	ENST00000377967	NM_021140.2	1104	Act/Cct						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	252	202	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176637574	176637574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	665	348	2	ENST00000439151.2:c.2174C>T	p.Thr725Met	p.T725M	ENST00000439151	NM_022455.4	725	aCg/aTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	637	532	0	ENST00000269305.4:c.809T>G	p.Phe270Cys	p.F270C	ENST00000269305	NM_001126112.2	270	tTt/tGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0004861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	792	382	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt						NEWRECORD																																																																									
FGF3	2248	MSKCC	GRCh37	11	69625120	69625120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	160	404	0	ENST00000334134.2:c.673G>A	p.Val225Ile	p.V225I	ENST00000334134	NM_005247.2	225	Gtt/Att						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226573315	226573315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	448	442	1	ENST00000366794.5:c.901C>A	p.Gln301Lys	p.Q301K	ENST00000366794	NM_001618.3	301	Cag/Aag						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47142990	47142990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	592	496	0	ENST00000409792.3:c.4973C>T	p.Ser1658Leu	p.S1658L	ENST00000409792	NM_014159.6	1658	tCa/tTa						NEWRECORD																																																																									
FOXP1	27086	MSKCC	GRCh37	3	71015170	71015170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	417	373	2	ENST00000318789.4:c.1760C>T	p.Thr587Ile	p.T587I	ENST00000318789	NM_032682.5	587	aCc/aTc						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66467859	66467859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	713	481	1	ENST00000273854.3:c.410G>A	p.Cys137Tyr	p.C137Y	ENST00000273854	NM_004439.5	137	tGc/tAc						NEWRECORD																																																																									
FGFR2	2263	MSKCC	GRCh37	10	123298229	123298229	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	240	312	0	ENST00000358487.5:c.625G>A	p.Val209Ile	p.V209I	ENST00000358487	NM_000141.4	209	Gta/Ata						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49440200	49440201	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0004861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	172	413	0	ENST00000301067.7:c.4425_4426del	p.Ser1476LeufsTer14	p.S1476Lfs*14	ENST00000301067	NM_003482.3	1475	gtGTcc/gtcc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	276	558	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057520005		P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	344	759	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt						NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36933747	36933747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	162	813	2	ENST00000361632.4:c.1652C>T	p.Pro551Leu	p.P551L	ENST00000361632		551	cCc/cTc						NEWRECORD																																																																									
FOXP1	27086	MSKCC	GRCh37	3	71247530	71247530	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	78	344	0	ENST00000318789.4:c.3G>A	p.Met1?	p.M1?	ENST00000318789	NM_032682.5	1	atG/atA						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2958163	2958163	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	110	512	0	ENST00000396946.4:c.2569G>T	p.Glu857Ter	p.E857*	ENST00000396946	NM_032415.4	857	Gag/Tag						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116417463	116417463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	147	631	0	ENST00000397752.3:c.3280C>T	p.His1094Tyr	p.H1094Y	ENST00000397752	NM_000245.2	1094	Cat/Tat						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8528633	8528633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	479	644	1	ENST00000356435.5:c.499G>T	p.Asp167Tyr	p.D167Y	ENST00000356435		167	Gac/Tac						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974711	21974711	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	135	476	0	ENST00000304494.5:c.116A>T	p.Asn39Ile	p.N39I	ENST00000304494	NM_000077.4	39	aAc/aTc						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23649216	23649216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	210	698	0	ENST00000261584.4:c.166G>A	p.Asp56Asn	p.D56N	ENST00000261584	NM_024675.3	56	Gat/Aat						NEWRECORD																																																																									
RARA	5914	MSKCC	GRCh37	17	38487490	38487490	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs150291626		P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	127	488	0	ENST00000254066.5:c.20C>G	p.Ser7Cys	p.S7C	ENST00000254066	NM_000964.3	7	tCc/tGc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1218494	1218494	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	130	545	0	ENST00000326873.7:c.369G>C	p.Gln123His	p.Q123H	ENST00000326873	NM_000455.4	123	caG/caC						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1219360	1219360	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	172	571	0	ENST00000326873.7:c.412G>C	p.Glu138Gln	p.E138Q	ENST00000326873	NM_000455.4	138	Gaa/Caa						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220466	1220466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	155	563	3	ENST00000326873.7:c.559G>A	p.Gly187Ser	p.G187S	ENST00000326873	NM_000455.4	187	Ggt/Agt						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44513240	44513240	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	78	321	0	ENST00000291552.4:c.695G>A	p.Arg232Lys	p.R232K	ENST00000291552	NM_006758.2	232	aGa/aAa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	94	445	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0005288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	64	319	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187							NEWRECORD																																																																									
CDC73	79577	MSKCC	GRCh37	1	193094339	193094339	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	78	328	0	ENST00000367435.3:c.229C>G	p.Arg77Gly	p.R77G	ENST00000367435	NM_024529.4	77	Cgt/Ggt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48584607	48584607	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	121	471	0	ENST00000342988.3:c.781delC	p.His261IlefsTer75	p.H261Ifs*75	ENST00000342988	NM_005359.5	260	taC/ta						NEWRECORD																																																																									
PIK3R3	8503	MSKCC	GRCh37	1	46509541	46509541	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	38	222	0	ENST00000262741.5:c.1190C>T	p.Ala397Val	p.A397V	ENST00000262741	NM_003629.3	397	gCc/gTc						NEWRECORD																																																																									
PIK3R3	8503	MSKCC	GRCh37	1	46521483	46521483	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1255	104	426	2	ENST00000262741.5:c.925C>T	p.Arg309Ter	p.R309*	ENST00000262741	NM_003629.3	309	Cga/Tga						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55140756	55140756	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	139	341	0	ENST00000257290.5:c.1617C>G	p.Ile539Met	p.I539M	ENST00000257290	NM_006206.4	539	atC/atG						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86659321	86659321	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0007068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	207	299	1	ENST00000274376.6:c.1610G>T	p.Arg537Met	p.R537M	ENST00000274376	NM_002890.2	537	aGg/aTg						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8733827	8733827	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	186	333	0	ENST00000356435.5:c.17G>T	p.Arg6Met	p.R6M	ENST00000356435		6	aGg/aTg						NEWRECORD																																																																									
RPS6KA4	8986	MSKCC	GRCh37	11	64129400	64129400	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	383	329	3	ENST00000334205.4:c.832T>A	p.Cys278Ser	p.C278S	ENST00000334205	NM_003942.2	278	Tgt/Agt						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	420065	420065	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	288	353	0	ENST00000399788.2:c.3202C>G	p.His1068Asp	p.H1068D	ENST00000399788	NM_001042603.1	1068	Cat/Gat						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	400	395	0	ENST00000269305.4:c.800G>C	p.Arg267Pro	p.R267P	ENST00000269305	NM_001126112.2	267	cGg/cCg						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63411990	63411990	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	278	258	0	ENST00000330258.3:c.1177G>C	p.Glu393Gln	p.E393Q	ENST00000330258	NM_152424.3	393	Gaa/Caa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	361	362	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149510128	149510128	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	109	378	0	ENST00000261799.4:c.1341C>G	p.Ile447Met	p.I447M	ENST00000261799	NM_002609.3	447	atC/atG						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32165273	32165273	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	121	394	0	ENST00000375023.3:c.4855C>G	p.Leu1619Val	p.L1619V	ENST00000375023	NM_004557.3	1619	Ctg/Gtg						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135781488	135781488	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	191	769	0	ENST00000298552.3:c.1477G>C	p.Glu493Gln	p.E493Q	ENST00000298552	NM_001162426.1	493	Gag/Cag						NEWRECORD																																																																									
TRAF2	7186	MSKCC	GRCh37	9	139794048	139794048	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	57	664	0	ENST00000247668.2:c.191C>G	p.Ser64Cys	p.S64C	ENST00000247668	NM_021138.3	64	tCt/tGt						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63852095	63852095	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	67	289	0	ENST00000279873.7:c.2873C>A	p.Ser958Ter	p.S958*	ENST00000279873	NM_032199.2	958	tCa/tAa						NEWRECORD																																																																									
FGF4	2249	MSKCC	GRCh37	11	69589513	69589513	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	34	87	0	ENST00000168712.1:c.340A>T	p.Ser114Cys	p.S114C	ENST00000168712	NM_002007.2	114	Agc/Tgc						NEWRECORD																																																																									
PAK1	5058	MSKCC	GRCh37	11	77103453	77103453	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	127	603	0	ENST00000356341.3:c.113C>G	p.Ser38Cys	p.S38C	ENST00000356341	NM_002576.4	38	tCt/tGt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49422616	49422616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	112	385	0	ENST00000301067.7:c.14377G>A	p.Ala4793Thr	p.A4793T	ENST00000301067	NM_003482.3	4793	Gcc/Acc						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	29008078	29008078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	80	362	0	ENST00000282397.4:c.691G>A	p.Asp231Asn	p.D231N	ENST00000282397	NM_002019.4	231	Gat/Aat						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32972816	32972816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	91	449	0	ENST00000380152.3:c.10166C>T	p.Ser3389Phe	p.S3389F	ENST00000380152		3389	tCt/tTt						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23646234	23646234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	140	608	0	ENST00000261584.4:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000261584	NM_024675.3	545	Gaa/Aaa						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81922876	81922876	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	112	574	0	ENST00000359376.3:c.865G>A	p.Glu289Lys	p.E289K	ENST00000359376	NM_002661.3	289	Gag/Aag						NEWRECORD																																																																									
SRSF2	6427	MSKCC	GRCh37	17	74732266	74732266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1227	163	681	1	ENST00000359995.5:c.643G>A	p.Glu215Lys	p.E215K	ENST00000359995	NM_001195427.1	215	Gag/Aag						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40790123	40790123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	46	256	1	ENST00000373198.4:c.2608C>T	p.Arg870Cys	p.R870C	ENST00000373198	NM_133170.3	870	Cgc/Tgc						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44833960	44833960	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	34	617	0	ENST00000377967.4:c.384G>C	p.Lys128Asn	p.K128N	ENST00000377967	NM_021140.2	128	aaG/aaC						NEWRECORD																																																																									
ARAF	369	MSKCC	GRCh37	X	47422380	47422380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	142	549	1	ENST00000377045.4:c.14G>A	p.Arg5Gln	p.R5Q	ENST00000377045	NM_001654.4	5	cGg/cAg						NEWRECORD																																																																									
AURKA	6790	MSKCC	GRCh37	20	54948551	54949166	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTCTATGAATAACTCTCTTCGAATGACAGTAAGACAGGGCATTTGCCAATTCTGTTATATACTGTTAAAACAATATTGAAAGCCTATGTTTTAGATTTTATATAACACAAGTTAATATTAGACATCTCTTCCGAAAGGAACACAACATAGATTTAACATGGTTTGCAGGTTTTGGCCAGGCACAGTGGCTCACACCTATAATCCCAACACTTTGGGGGACTGAGGTGGGAGGATCACTTGAGCCCAGGGGTTCAAGACCAGCCTGGGAAACATAGCAAGACTCCATCTCTACAAAAATTTAAAAATTAGCTGAGCGTGATGGTGCATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGGATTGCTTGAGACCAGGAGGTCAAAGCTGCAGTGAGCCATGATCACACTTCAGCCTGGGTGACAGAAGGAGACCCTGTCTCAAAAAGGAAAAGACAAAACAAAAAATACATTTTGCAGGTTTTAAAGCAAGGATTGTAGAAATTATATAGGAGTCTACACACACACACACACACACACACACACACACACATCAACTGAACCAATTTATAGTGGTTAGCATGAAGTGAAATTACCCAATGCTTAGTCATC	TCTCTATGAATAACTCTCTTCGAATGACAGTAAGACAGGGCATTTGCCAATTCTGTTATATACTGTTAAAACAATATTGAAAGCCTATGTTTTAGATTTTATATAACACAAGTTAATATTAGACATCTCTTCCGAAAGGAACACAACATAGATTTAACATGGTTTGCAGGTTTTGGCCAGGCACAGTGGCTCACACCTATAATCCCAACACTTTGGGGGACTGAGGTGGGAGGATCACTTGAGCCCAGGGGTTCAAGACCAGCCTGGGAAACATAGCAAGACTCCATCTCTACAAAAATTTAAAAATTAGCTGAGCGTGATGGTGCATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGGATTGCTTGAGACCAGGAGGTCAAAGCTGCAGTGAGCCATGATCACACTTCAGCCTGGGTGACAGAAGGAGACCCTGTCTCAAAAAGGAAAAGACAAAACAAAAAATACATTTTGCAGGTTTTAAAGCAAGGATTGTAGAAATTATATAGGAGTCTACACACACACACACACACACACACACACACACACATCAACTGAACCAATTTATAGTGGTTAGCATGAAGTGAAATTACCCAATGCTTAGTCATC	-			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1322	428	502	0	ENST00000312783.6:c.706-554_767del		p.X236_splice	ENST00000312783	NM_198436.1	236							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577125	7577131	+	frameshift_variant	Frame_Shift_Del	DEL	CTCAAAG	CTCAAAG	-			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	235	559	0	ENST00000269305.4:c.807_813del	p.Ser269ArgfsTer74	p.S269Rfs*74	ENST00000269305	NM_001126112.2	269	agCTTTGAG/ag						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56160680	56160689	+	frameshift_variant	Frame_Shift_Del	DEL	ACTGCAGCAG	ACTGCAGCAG	-			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	181	462	0	ENST00000399503.3:c.955_964del	p.Leu319Ter	p.L319*	ENST00000399503	NM_005921.1	318	ttACTGCAGCAG/tt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0009738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	12	225	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0009090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	25	286	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0005713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	112	468	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga						NEWRECORD																																																																									
CDKN1B	1027	MSKCC	GRCh37	12	12871182	12871182	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	51	211	0	ENST00000228872.4:c.410delC	p.Pro137ArgfsTer8	p.P137Rfs*8	ENST00000228872	NM_004064.3	137	Ccg/cg						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185155241	185155241	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	189	470	1	ENST00000265026.3:c.482G>C	p.Trp161Ser	p.W161S	ENST00000265026	NM_004721.4	161	tGg/tCg						NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103506669	103506669	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs188898060		P-0005713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	98	413	0	ENST00000355739.4:c.412C>T	p.Arg138Ter	p.R138*	ENST00000355739	NM_000123.3	138	Cga/Tga						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0007864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	74	462	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0007864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	139	492	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	55	263	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0007864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	97	461	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150004270	150004270	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	157	737	0	ENST00000253339.5:c.1955A>G	p.Lys652Arg	p.K652R	ENST00000253339		652	aAa/aGa						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30713613	30713613	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	74	279	0	ENST00000359013.4:c.1014del	p.Lys339ArgfsTer10	p.K339Rfs*10	ENST00000359013	NM_001024847.2	338	cGg/cg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0006595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	288	670	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	41	578	1	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa						NEWRECORD																																																																									
JUN	3725	MSKCC	GRCh37	1	59248586	59248586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	613	576	0	ENST00000371222.2:c.157C>T	p.Leu53Phe	p.L53F	ENST00000371222	NM_002228.3	53	Ctc/Ttc						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64575089	64575089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	544	517	1	ENST00000337652.1:c.733G>T	p.Val245Leu	p.V245L	ENST00000337652	NM_130803.2	245	Gtg/Ttg						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59793346	59793346	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1099	286	534	0	ENST00000259008.2:c.2458C>G	p.Gln820Glu	p.Q820E	ENST00000259008	NM_032043.2	820	Caa/Gaa						NEWRECORD																																																																									
JUN	3725	MSKCC	GRCh37	1	59248614	59248631	+	inframe_deletion	In_Frame_Del	DEL	GGCCAGGTTCAGGGTCAT	GGCCAGGTTCAGGGTCAT	-			P-0006595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	650	591	0	ENST00000371222.2:c.112_129del	p.Met38_Ala43del	p.M38_A43del	ENST00000371222	NM_002228.3	38	ATGACCCTGAACCTGGCC/-						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112177113	112177116	+	frameshift_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0006595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	517	544	0	ENST00000257430.4:c.5826_5829del	p.Asp1942GlufsTer27	p.D1942Efs*27	ENST00000257430	NM_000038.5	1941	cCAGAc/cc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	309	377	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0007272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1087	370	429	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1973	432	711	2	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178922301	178922301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	203	340	0	ENST00000263967.3:c.1070G>T	p.Arg357Leu	p.R357L	ENST00000263967	NM_006218.2	357	cGa/cTa						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81953114	81953114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1137	87	624	1	ENST00000359376.3:c.2080C>T	p.Arg694Cys	p.R694C	ENST00000359376	NM_002661.3	694	Cgc/Tgc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175872	112175872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	244	315	0	ENST00000257430.4:c.4581del	p.Val1528PhefsTer37	p.V1528Ffs*37	ENST00000257430	NM_000038.5	1527	ccA/cc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	29	380	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	29	495	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	19	213	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0009712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	144	659	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0009712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1241	53	449	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca						NEWRECORD																																																																									
KMT2C	58508	MSKCC	GRCh37	7	151878749	151878749	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1211949081		P-0009712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	93	422	0	ENST00000262189.6:c.6196C>T	p.Arg2066Ter	p.R2066*	ENST00000262189	NM_170606.2	2066	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112137036	112137036	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	112	433	1	ENST00000257430.4:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000257430	NM_000038.5	264	Caa/Taa						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123227869	123227869	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	27	212	0	ENST00000218089.9:c.3580C>T	p.Arg1194Trp	p.R1194W	ENST00000218089	NM_001042749.1	1194	Cgg/Tgg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604794	+	frameshift_variant	Frame_Shift_Del	DEL	ACGAAGT	ACGAAGT	-			P-0009712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	100	477	0	ENST00000342988.3:c.1612_1618del	p.Glu538PhefsTer12	p.E538Ffs*12	ENST00000342988	NM_005359.5	537	gACGAAGTa/ga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	660	421	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117704604	117704604	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	244	588	2	ENST00000368508.3:c.2372A>G	p.Asp791Gly	p.D791G	ENST00000368508	NM_002944.2	791	gAc/gGc						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43612110	43612110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	309	653	0	ENST00000355710.3:c.2215G>T	p.Val739Phe	p.V739F	ENST00000355710	NM_020975.4	739	Gtc/Ttc						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89711894	89711894	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	224	342	0	ENST00000371953.3:c.512A>G	p.Gln171Arg	p.Q171R	ENST00000371953	NM_000314.4	171	cAg/cGg						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87342743	87342743	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	238	358	0	ENST00000277120.3:c.1028A>G	p.His343Arg	p.H343R	ENST00000277120		343	cAc/cGc						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68845610	68845618	+	inframe_deletion	In_Frame_Del	DEL	GCCACAGAC	GCCACAGAC	-			P-0007566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	204	366	0	ENST00000261769.5:c.858_866del	p.Thr287_Ala289del	p.T287_A289del	ENST00000261769	NM_004360.3	286	GCCACAGAC/-						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720809	89720809	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	82	174	1	ENST00000371953.3:c.961del	p.Thr321GlnfsTer23	p.T321Qfs*23	ENST00000371953	NM_000314.4	320	ttA/tt						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99459922	99459922	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	74	436	0	ENST00000268035.6:c.2018A>G	p.Tyr673Cys	p.Y673C	ENST00000268035	NM_000875.3	673	tAt/tGt						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139391234	139391238	+	frameshift_variant	Frame_Shift_Del	DEL	CACCA	CACCA	-			P-0005462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	66	439	0	ENST00000277541.6:c.6953_6957del	p.Met2318ThrfsTer34	p.M2318Tfs*34	ENST00000277541	NM_017617.3	2318	aTGGTG/a						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134967350	134967350	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs61736108		P-0006757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	55	514	0	ENST00000398015.3:c.2689G>A	p.Val897Met	p.V897M	ENST00000398015	NM_004441.4	897	Gtg/Atg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0004691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	130	456	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	72	275	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1173	43	437	0	ENST00000269305.4:c.820G>C	p.Val274Leu	p.V274L	ENST00000269305	NM_001126112.2	274	Gtt/Ctt						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120612018	120612018	+	start_lost	Translation_Start_Site	SNP	C	C	T	rs149632008		P-0004909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	15	34	0	ENST00000256646.2:c.3G>A	p.Met1?	p.M1?	ENST00000256646	NM_024408.3	1	atG/atA						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57466824	57466824	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	33	232	0	ENST00000371085.3:c.43G>T	p.Glu15Ter	p.E15*	ENST00000371085	NM_000516.4	15	Gag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0006390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	428	413	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331							NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	240	397	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23641487	23641487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	337	472	1	ENST00000261584.4:c.1988G>A	p.Arg663His	p.R663H	ENST00000261584	NM_024675.3	663	cGc/cAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0006471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	244	427	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt						NEWRECORD																																																																									
HIST1H3J	8356	MSKCC	GRCh37	6	27858476	27858476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1248	107	807	0	ENST00000359303.2:c.95C>T	p.Ala32Val	p.A32V	ENST00000359303	NM_003535.2	32	gCg/gTg						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49027208	49027229	+	frameshift_variant	Frame_Shift_Del	DEL	TTAATCTTCCTCTCCAGAATAA	TTAATCTTCCTCTCCAGAATAA	-			P-0006471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	83	347	0	ENST00000267163.4:c.1776_1797del	p.Asn593ThrfsTer11	p.N593Tfs*11	ENST00000267163	NM_000321.2	592	cTTAATCTTCCTCTCCAGAATAAt/ct						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	89	383	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	31	387	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1180	42	421	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	35	115	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56448319	56448319	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	44	287	0	ENST00000407977.2:c.328G>T	p.Glu110Ter	p.E110*	ENST00000407977		110	Gag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	105	580	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0007604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	124	305	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59878702	59878702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	126	783	0	ENST00000259008.2:c.1052C>T	p.Pro351Leu	p.P351L	ENST00000259008	NM_032043.2	351	cCa/cTa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	276	655	1	ENST00000269305.4:c.892del	p.Glu298SerfsTer47	p.E298Sfs*47	ENST00000269305	NM_001126112.2	298	Gag/ag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	406	303	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	333	330	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89391168	89391168	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772463834		P-0009333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	159	317	0	ENST00000336596.2:c.1234G>A	p.Val412Ile	p.V412I	ENST00000336596	NM_005233.5	412	Gtt/Att						NEWRECORD																																																																									
MITF	4286	MSKCC	GRCh37	3	69998291	69998291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	250	378	0	ENST00000352241.4:c.852C>A	p.Asn284Lys	p.N284K	ENST00000352241	NM_198159.2	284	aaC/aaA						NEWRECORD																																																																									
MDM2	4193	MSKCC	GRCh37	12	69222572	69222572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			5584	794	465	1	ENST00000462284.1:c.545C>T	p.Ser182Phe	p.S182F	ENST00000462284	NM_002392.5	182	tCt/tTt						NEWRECORD																																																																									
MDM2	4193	MSKCC	GRCh37	12	69222704	69222704	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			5713	701	449	0	ENST00000462284.1:c.677C>G	p.Ser226Trp	p.S226W	ENST00000462284	NM_002392.5	226	tCg/tGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	67	249	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg						NEWRECORD																																																																									
RHOA	387	MSKCC	GRCh37	3	49405905	49405905	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1170	82	482	0	ENST00000418115.1:c.233A>T	p.Asp78Val	p.D78V	ENST00000418115	NM_001664.2	78	gAt/gTt						NEWRECORD																																																																									
RPS6KB2	6199	MSKCC	GRCh37	11	67200877	67200877	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	57	396	0	ENST00000312629.5:c.865C>A	p.Pro289Thr	p.P289T	ENST00000312629	NM_003952.2	289	Ccc/Acc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	119	459	0	ENST00000342988.3:c.1055G>T	p.Gly352Val	p.G352V	ENST00000342988	NM_005359.5	352	gGa/gTa						NEWRECORD																																																																									
PDCD1	5133	MSKCC	GRCh37	2	242794439	242794439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	127	687	0	ENST00000334409.5:c.503C>A	p.Thr168Asn	p.T168N	ENST00000334409	NM_005018.2	168	aCc/aAc						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72821214	72821214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	199	703	0	ENST00000268489.5:c.10961C>T	p.Ser3654Leu	p.S3654L	ENST00000268489	NM_006885.3	3654	tCg/tTg						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31023864	31023864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	96	332	0	ENST00000375687.4:c.3349C>T	p.Pro1117Ser	p.P1117S	ENST00000375687	NM_015338.5	1117	Ccc/Tcc						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0009755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	121	382	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0009755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	71	610	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55371683	55371683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	52	390	0	ENST00000297316.4:c.373C>T	p.Arg125Cys	p.R125C	ENST00000297316	NM_022454.3	125	Cgc/Tgc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0007975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	95	428	3	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32188317	32188317	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144492578		P-0007975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	57	509	1	ENST00000375023.3:c.1024G>A	p.Val342Met	p.V342M	ENST00000375023	NM_004557.3	342	Gtg/Atg						NEWRECORD																																																																									
FOXP1	27086	MSKCC	GRCh37	3	71026841	71026842	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0007975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1084	58	484	0	ENST00000318789.4:c.1380_1381del	p.Asn461ArgfsTer4	p.N461Rfs*4	ENST00000318789	NM_032682.5	460	aaGAac/aaac						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15968916	15968916	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	100	284	0	ENST00000268712.3:c.4834A>G	p.Thr1612Ala	p.T1612A	ENST00000268712	NM_006311.3	1612	Aca/Gca						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32911651	32911661	+	frameshift_variant	Frame_Shift_Del	DEL	AGATAATCAAA	AGATAATCAAA	-			P-0007366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	121	376	1	ENST00000380152.3:c.3162_3172del	p.Asp1054GlufsTer9	p.D1054Efs*9	ENST00000380152		1053	ttAGATAATCAAAag/ttag						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	44	293	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0009619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	137	409	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48581229	48581229	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	178	421	0	ENST00000342988.3:c.533C>G	p.Ser178Ter	p.S178*	ENST00000342988	NM_005359.5	178	tCa/tGa						NEWRECORD																																																																									
CASP8	841	MSKCC	GRCh37	2	202131463	202131463	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	73	290	0	ENST00000358485.4:c.431A>T	p.Glu144Val	p.E144V	ENST00000358485	NM_001080125.1	144	gAg/gTg						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0007179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	59	387	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	115	356	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576870	7576870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs876659384		P-0007179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	138	411	0	ENST00000269305.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000269305	NM_001126112.2	326	Gaa/Taa						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971101	21971101	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	14	182	0	ENST00000361570.3:c.423C>A	p.Cys141Ter	p.C141*	ENST00000361570	NM_058195.3	141	tgC/tgA						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023159	27023159	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	61	51	0	ENST00000324856.7:c.265G>C	p.Gly89Arg	p.G89R	ENST00000324856	NM_006015.4	89	Ggc/Cgc						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971075	21971075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	15	197	0	ENST00000304494.5:c.283G>A	p.Val95Met	p.V95M	ENST00000304494	NM_000077.4	95	Gtg/Atg						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55964321	55964332	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	CTGGGGAATTCC	CTGGGGAATTCC	-			P-0008069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	182	562	0	ENST00000263923.4:c.2481_2492del	p.Trp827_Arg831delinsTer	p.W827_R831delins*	ENST00000263923	NM_002253.2	827	tgGGAATTCCCCAGa/tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	218	409	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220640	1220640	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	271	477	2	ENST00000326873.7:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000326873	NM_000455.4	220	Cag/Tag						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47164591	47164591	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	134	438	0	ENST00000409792.3:c.1535C>G	p.Ser512Ter	p.S512*	ENST00000409792	NM_014159.6	512	tCa/tGa						NEWRECORD																																																																									
CHEK2	11200	MSKCC	GRCh37	22	29092948	29092948	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201206424		P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	171	459	0	ENST00000328354.6:c.1036C>T	p.Arg346Cys	p.R346C	ENST00000328354	NM_007194.3	346	Cgt/Tgt						NEWRECORD																																																																									
REL	5966	MSKCC	GRCh37	2	61145620	61145620	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	147	486	0	ENST00000295025.8:c.732C>G	p.Phe244Leu	p.F244L	ENST00000295025	NM_002908.2	244	ttC/ttG						NEWRECORD																																																																									
PDCD1	5133	MSKCC	GRCh37	2	242794494	242794494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	184	345	0	ENST00000334409.5:c.448G>C	p.Glu150Gln	p.E150Q	ENST00000334409	NM_005018.2	150	Gaa/Caa						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47164900	47164900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	127	374	0	ENST00000409792.3:c.1226C>G	p.Ser409Cys	p.S409C	ENST00000409792	NM_014159.6	409	tCt/tGt						NEWRECORD																																																																									
GSK3B	2932	MSKCC	GRCh37	3	119634991	119634991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	78	385	0	ENST00000316626.5:c.508G>T	p.Ala170Ser	p.A170S	ENST00000316626		170	Gcc/Tcc						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143130170	143130170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	93	353	0	ENST00000262992.4:c.846G>T	p.Glu282Asp	p.E282D	ENST00000262992	NM_001101669.1	282	gaG/gaT						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151884437	151884437	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	171	387	0	ENST00000262189.6:c.4918G>T	p.Glu1640Ter	p.E1640*	ENST00000262189	NM_170606.2	1640	Gag/Tag						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5077452	5077452	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	53	257	0	ENST00000381652.3:c.1865-1G>C		p.X622_splice	ENST00000381652	NM_004972.3	622							NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98211483	98211483	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	260	334	0	ENST00000331920.6:c.3672G>C	p.Glu1224Asp	p.E1224D	ENST00000331920	NM_000264.3	1224	gaG/gaC						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57864883	57864883	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	463	627	0	ENST00000228682.2:c.2360C>G	p.Ser787Cys	p.S787C	ENST00000228682	NM_005269.2	787	tCt/tGt						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99434821	99434821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	180	265	0	ENST00000268035.6:c.908G>T	p.Cys303Phe	p.C303F	ENST00000268035	NM_000875.3	303	tGc/tTc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220382	1220382	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	247	435	0	ENST00000326873.7:c.475C>G	p.Gln159Glu	p.Q159E	ENST00000326873	NM_000455.4	159	Cag/Gag						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7141823	7141823	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	235	371	0	ENST00000302850.5:c.2547G>C	p.Lys849Asn	p.K849N	ENST00000302850	NM_000208.2	849	aaG/aaC						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600378	10600378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	332	531	0	ENST00000171111.5:c.1477G>A	p.Glu493Lys	p.E493K	ENST00000171111	NM_203500.1	493	Gag/Aag						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11145662	11145662	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	242	398	0	ENST00000344626.4:c.4024G>T	p.Glu1342Ter	p.E1342*	ENST00000344626	NM_003072.3	1342	Gag/Tag						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31024053	31024053	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	217	422	0	ENST00000375687.4:c.3538G>C	p.Asp1180His	p.D1180H	ENST00000375687	NM_015338.5	1180	Gat/Cat						NEWRECORD																																																																									
CHEK2	11200	MSKCC	GRCh37	22	29130673	29130673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	207	288	0	ENST00000328354.6:c.37C>T	p.His13Tyr	p.H13Y	ENST00000328354	NM_007194.3	13	Cat/Tat						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42003375	42003375	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	305	623	0	ENST00000219905.7:c.2913del	p.Gln972ArgfsTer22	p.Q972Rfs*22	ENST00000219905	NM_001164273.1	971	cGg/cg						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0006395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	41	332	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0006105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	129	614	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0006105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	178	630	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266112	41266112	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	77	592	0	ENST00000349496.5:c.109T>G	p.Ser37Ala	p.S37A	ENST00000349496	NM_001904.3	37	Tct/Gct						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180057800	180057800	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0006105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	66	359	0	ENST00000261937.6:c.156-1G>A		p.X52_splice	ENST00000261937	NM_182925.4	52							NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720850	89720850	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	53	273	0	ENST00000371953.3:c.1001A>G	p.Asn334Ser	p.N334S	ENST00000371953	NM_000314.4	334	aAc/aGc						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89445051	89445051	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	285	613	2	ENST00000336596.2:c.1371G>A	p.Trp457Ter	p.W457*	ENST00000336596	NM_005233.5	457	tgG/tgA						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	93967860	93967860	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	107	962	0	ENST00000369303.4:c.2067T>G	p.Phe689Leu	p.F689L	ENST00000369303	NM_004440.3	689	ttT/ttG						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857158	9857158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	436	714	0	ENST00000330684.3:c.4243G>A	p.Asp1415Asn	p.D1415N	ENST00000330684	NM_001134407.1	1415	Gac/Aac						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9892187	9892187	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	345	687	0	ENST00000330684.3:c.2303G>T	p.Gly768Val	p.G768V	ENST00000330684	NM_001134407.1	768	gGc/gTc						NEWRECORD																																																																									
TRAF7	84231	MSKCC	GRCh37	16	2223303	2223303	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	48	493	0	ENST00000326181.6:c.916del	p.Ala306ProfsTer24	p.A306Pfs*24	ENST00000326181	NM_032271.2	305	ctG/ct						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578264	7578338	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCA	GATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCA	TT			P-0008966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	280	561	0	ENST00000269305.4:c.559+33_585delinsAA		p.X187_splice	ENST00000269305	NM_001126112.2	187							NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	364	346	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	994	470	0	ENST00000269305.4:c.643A>G	p.Ser215Gly	p.S215G	ENST00000269305	NM_001126112.2	215	Agt/Ggt						NEWRECORD																																																																									
ACVR1	90	MSKCC	GRCh37	2	158626924	158626924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1160	131	535	2	ENST00000263640.3:c.746C>T	p.Thr249Met	p.T249M	ENST00000263640	NM_001105.4	249	aCg/aTg						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32169106	32169106	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	140	427	0	ENST00000375023.3:c.3927C>G	p.Asp1309Glu	p.D1309E	ENST00000375023	NM_004557.3	1309	gaC/gaG						NEWRECORD																																																																									
PTPN11	5781	MSKCC	GRCh37	12	112926270	112926270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	186	484	0	ENST00000351677.2:c.1403C>T	p.Thr468Met	p.T468M	ENST00000351677	NM_002834.3	468	aCg/aTg						NEWRECORD																																																																									
PTPN11	5781	MSKCC	GRCh37	12	112926893	112926893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	252	391	2	ENST00000351677.2:c.1513G>A	p.Val505Ile	p.V505I	ENST00000351677	NM_002834.3	505	Gtc/Atc						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95557552	95557552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	44	401	1	ENST00000343455.3:c.5515C>T	p.Arg1839Trp	p.R1839W	ENST00000343455	NM_177438.2	1839	Cgg/Tgg						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41525902	41525902	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	334	374	0	ENST00000263253.7:c.1177T>A	p.Cys393Ser	p.C393S	ENST00000263253	NM_001429.3	393	Tgt/Agt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0007624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	21	418	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0007624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	25	435	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0006161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	14	245	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0009586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	135	393	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212248732	212248732	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	276	357	0	ENST00000342788.4:c.3535G>T	p.Asp1179Tyr	p.D1179Y	ENST00000342788	NM_005235.2	1179	Gac/Tac						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55955113	55955113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	220	403	2	ENST00000263923.4:c.3432C>A	p.His1144Gln	p.H1144Q	ENST00000263923	NM_002253.2	1144	caC/caA						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55976668	55976668	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	499	486	0	ENST00000263923.4:c.1157T>C	p.Met386Thr	p.M386T	ENST00000263923	NM_002253.2	386	aTg/aCg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	488	400	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49030485	49030485	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0009586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	69	173	0	ENST00000267163.4:c.1960G>T	p.Val654Leu	p.V654L	ENST00000267163	NM_000321.2	654	Gtg/Ttg						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72993417	72993417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1487	304	869	1	ENST00000268489.5:c.628G>T	p.Gly210Cys	p.G210C	ENST00000268489	NM_006885.3	210	Ggc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0009586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	406	591	2	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg						NEWRECORD																																																																									
STAT3	6774	MSKCC	GRCh37	17	40491341	40491341	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	345	427	0	ENST00000264657.5:c.459G>T	p.Lys153Asn	p.K153N	ENST00000264657	NM_139276.2	153	aaG/aaT						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17943502	17943502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	252	336	0	ENST00000458235.1:c.2506G>A	p.Val836Met	p.V836M	ENST00000458235	NM_000215.3	836	Gtg/Atg						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47028820	47028821	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0009586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	444	628	0	ENST00000329236.7:c.124_125delinsT	p.Arg42PhefsTer43	p.R42Ffs*43	ENST00000329236	NM_001204466.1	42	CGt/Tt						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42019560	42019560	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	620	729	1	ENST00000219905.7:c.3614del	p.Gly1205GlufsTer15	p.G1205Efs*15	ENST00000219905	NM_001164273.1	1205	Gga/ga						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0006883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	399	342	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576849	7576855	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTACCTG	GTACCTG	-			P-0006883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	113	291	0	ENST00000269305.4:c.991_993+4del		p.X331_splice	ENST00000269305	NM_001126112.2	331							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	39	455	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0005043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	26	556	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89259028	89259028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	10	302	0	ENST00000336596.2:c.172G>A	p.Val58Met	p.V58M	ENST00000336596	NM_005233.5	58	Gtg/Atg						NEWRECORD																																																																									
IDH2	3418	MSKCC	GRCh37	15	90631935	90631935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	10	545	1	ENST00000330062.3:c.418C>T	p.Arg140Trp	p.R140W	ENST00000330062	NM_002168.2	140	Cgg/Tgg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0009194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	100	280	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8484275	8484275	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	146	299	0	ENST00000356435.5:c.3257C>G	p.Thr1086Arg	p.T1086R	ENST00000356435		1086	aCa/aGa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380206	25380206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	154	331	0	ENST00000256078.4:c.252A>G	p.Ile84Met	p.I84M	ENST00000256078	NM_033360.2	84	atA/atG						NEWRECORD																																																																									
H3F3C	440093	MSKCC	GRCh37	12	31944762	31944762	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	87	143	1	ENST00000340398.3:c.339C>A	p.His113Gln	p.H113Q	ENST00000340398	NM_001013699.2	113	caC/caA						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	29008251	29008251	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	142	381	1	ENST00000282397.4:c.620G>T	p.Cys207Phe	p.C207F	ENST00000282397	NM_002019.4	207	tGt/tTt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10599952	10599952	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	213	402	1	ENST00000171111.5:c.1624G>T	p.Glu542Ter	p.E542*	ENST00000171111	NM_203500.1	542	Gag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0005712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	150	449	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67592087	67592087	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	167	556	1	ENST00000274335.5:c.1903G>T	p.Glu635Ter	p.E635*	ENST00000274335		635	Gaa/Taa						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32972801	32972801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	117	400	1	ENST00000380152.3:c.10151G>A	p.Arg3384Gln	p.R3384Q	ENST00000380152		3384	cGa/cAa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151878132	151878154	+	frameshift_variant	Frame_Shift_Del	DEL	TGTATCAGGTGGCCTTACCAACG	TGTATCAGGTGGCCTTACCAACG	-			P-0005712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	111	451	0	ENST00000262189.6:c.6791_6813del	p.Pro2264LeufsTer6	p.P2264Lfs*6	ENST00000262189	NM_170606.2	2264	cCGTTGGTAAGGCCACCTGATACA/c						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs137853076		P-0009732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	236	360	0	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212989551	212989551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	168	360	0	ENST00000342788.4:c.160G>A	p.Glu54Lys	p.E54K	ENST00000342788	NM_005235.2	54	Gaa/Aaa						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52438535	52438535	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0009732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	193	352	0	ENST00000460680.1:c.1184C>G	p.Ser395Ter	p.S395*	ENST00000460680	NM_004656.3	395	tCa/tGa						NEWRECORD																																																																									
PDPK1	5170	MSKCC	GRCh37	16	2647657	2647657	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	226	561	0	ENST00000342085.4:c.1560C>G	p.Asn520Lys	p.N520K	ENST00000342085	NM_002613.4	520	aaC/aaG						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0005395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	387	517	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
CASP8	841	MSKCC	GRCh37	2	202151240	202151240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	724	561	1	ENST00000358485.4:c.1540G>A	p.Asp514Asn	p.D514N	ENST00000358485	NM_001080125.1	514	Gac/Aac						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189584521	189584521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1880	348	492	0	ENST00000264731.3:c.817G>T	p.Ala273Ser	p.A273S	ENST00000264731	NM_003722.4	273	Gcc/Tcc						NEWRECORD																																																																									
NBN	4683	MSKCC	GRCh37	8	90982782	90982782	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0005395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	279	213	0	ENST00000265433.3:c.706A>T	p.Lys236Ter	p.K236*	ENST00000265433	NM_002485.4	236	Aag/Tag						NEWRECORD																																																																									
TRAF2	7186	MSKCC	GRCh37	9	139818386	139818400	+	protein_altering_variant	In_Frame_Del	DEL	GTCCCTCTTCTTTGT	GTCCCTCTTCTTTGT	CATTCG			P-0005395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1679	342	695	0	ENST00000247668.2:c.1221_1235delinsCATTCG	p.Ser408_Val412delinsIleArg	p.S408_V412delinsIR	ENST00000247668	NM_021138.3	407	ctGTCCCTCTTCTTTGTg/ctCATTCGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0004725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	40	344	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99136554	99136554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	38	343	0	ENST00000074304.5:c.43C>A	p.Arg15Ser	p.R15S	ENST00000074304	NM_001134224.1	15	Cgt/Agt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	38	399	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27100183	27100183	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	35	381	0	ENST00000324856.7:c.3979C>T	p.Gln1327Ter	p.Q1327*	ENST00000324856	NM_006015.4	1327	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0006948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	189	519	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66467946	66467946	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs767139493		P-0006948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	70	448	0	ENST00000273854.3:c.323A>T	p.Asn108Ile	p.N108I	ENST00000273854	NM_004439.5	108	aAt/aTt						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55372244	55372244	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	20	182	0	ENST00000297316.4:c.934C>G	p.Gln312Glu	p.Q312E	ENST00000297316	NM_022454.3	312	Cag/Gag						NEWRECORD																																																																									
RYBP	23429	MSKCC	GRCh37	3	72495749	72495749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	264	332	1	ENST00000477973.2:c.321C>T	p.Ala108Val	p.A108V	ENST00000477973	NM_012234.5	108	gCc/gTc						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49431508	49431508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	55	479	0	ENST00000301067.7:c.9631G>A	p.Glu3211Lys	p.E3211K	ENST00000301067	NM_003482.3	3211	Gaa/Aaa						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32905055	32905055	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0006749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			19	159	166	0	ENST00000380152.3:c.682-1G>C		p.X228_splice	ENST00000380152		228							NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857622	9857622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	130	338	0	ENST00000330684.3:c.3779C>A	p.Pro1260Gln	p.P1260Q	ENST00000330684	NM_001134407.1	1260	cCa/cAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578213	7578231	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAGTGTTTCTGTCATCC	AAAAGTGTTTCTGTCATCC	-			P-0006749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	312	521	0	ENST00000269305.4:c.618_636delGGATGACAGAAACACTTTT	p.Leu206PhefsTer35	p.L206Ffs*35	ENST00000269305	NM_001126112.2	206	ttGGATGACAGAAACACTTTT/tt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0007901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	236	648	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0007901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	174	418	1	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145741454	145741454	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1140	91	651	0	ENST00000428558.2:c.1049G>C	p.Arg350Thr	p.R350T	ENST00000428558	NM_004260.3	350	aGg/aCg						NEWRECORD																																																																									
RAD51B	5890	MSKCC	GRCh37	14	68290313	68290313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	141	575	1	ENST00000487270.1:c.53G>A	p.Arg18His	p.R18H	ENST00000487270	NM_133509.3	18	cGt/cAt						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	33	447	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0007979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	17	498	1	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt						NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36932410	36932410	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201699446		P-0007979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1126	73	872	2	ENST00000361632.4:c.2059G>A	p.Gly687Ser	p.G687S	ENST00000361632		687	Ggc/Agc						NEWRECORD																																																																									
HIST1H3B	8358	MSKCC	GRCh37	6	26031970	26031970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	77	1279	0	ENST00000244661.2:c.319G>A	p.Asp107Asn	p.D107N	ENST00000244661	NM_003537.3	107	Gac/Aac						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	133	672	0	ENST00000206249.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000206249	NM_000125.3	536	cTc/cCc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577102	7577102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	401	901	3	ENST00000269305.4:c.836G>A	p.Gly279Glu	p.G279E	ENST00000269305	NM_001126112.2	279	gGg/gAg						NEWRECORD																																																																									
FOXP1	27086	MSKCC	GRCh37	3	71090479	71090479	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0006074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	147	679	1	ENST00000318789.4:c.869G>C	p.Ser290Thr	p.S290T	ENST00000318789	NM_032682.5	290	aGt/aCt						NEWRECORD																																																																									
HIST1H3B	8358	MSKCC	GRCh37	6	26032007	26032007	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1219	141	1381	0	ENST00000244661.2:c.282G>T	p.Gln94His	p.Q94H	ENST00000244661	NM_003537.3	94	caG/caT						NEWRECORD																																																																									
HIST1H3D	8351	MSKCC	GRCh37	6	26197265	26197265	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1310	366	1651	0	ENST00000356476.2:c.214G>C	p.Val72Leu	p.V72L	ENST00000356476		72	Gtc/Ctc						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63553976	63553976	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	63	768	0	ENST00000307078.5:c.763C>G	p.Leu255Val	p.L255V	ENST00000307078	NM_004655.3	255	Ctg/Gtg						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56167813	56167813	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	45	443	0	ENST00000399503.3:c.1378G>C	p.Glu460Gln	p.E460Q	ENST00000399503	NM_005921.1	460	Gaa/Caa						NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103514569	103514569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	75	281	0	ENST00000355739.4:c.1070C>T	p.Ser357Leu	p.S357L	ENST00000355739	NM_000123.3	357	tCa/tTa						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15383631	15383631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	40	284	0	ENST00000263377.2:c.280C>T	p.Leu94Phe	p.L94F	ENST00000263377	NM_058243.2	94	Ctc/Ttc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578424	7578427	+	frameshift_variant	Frame_Shift_Del	DEL	ATGT	ATGT	-			P-0007518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	356	273	0	ENST00000269305.4:c.503_506del	p.His168ArgfsTer5	p.H168Rfs*5	ENST00000269305	NM_001126112.2	168	cACATg/cg						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0005591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	97	480	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0005591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	25	454	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0009847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	44	428	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101907098	101907098	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	74	518	0	ENST00000374994.4:c.1058G>T	p.Gly353Val	p.G353V	ENST00000374994	NM_004612.2	353	gGa/gTa						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156843704	156843704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1261	137	733	0	ENST00000524377.1:c.1130C>T	p.Ala377Val	p.A377V	ENST00000524377	NM_002529.3	377	gCc/gTc						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	29008033	29008033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	67	516	0	ENST00000282397.4:c.736C>T	p.His246Tyr	p.H246Y	ENST00000282397	NM_002019.4	246	Cat/Tat						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55973957	55973957	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	41	420	0	ENST00000263923.4:c.1359del	p.His454IlefsTer23	p.H454Ifs*23	ENST00000263923	NM_002253.2	453	ccG/cc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912580		P-0005675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	16	352	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16258625	16258625	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	36	306	0	ENST00000375759.3:c.5890G>T	p.Glu1964Ter	p.E1964*	ENST00000375759	NM_015001.2	1964	Gag/Tag						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120465294	120465294	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	205	470	0	ENST00000256646.2:c.4967A>C	p.Gln1656Pro	p.Q1656P	ENST00000256646	NM_024408.3	1656	cAg/cCg						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151949078	151949078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	66	438	0	ENST00000262189.6:c.1567G>A	p.Glu523Lys	p.E523K	ENST00000262189	NM_170606.2	523	Gag/Aag						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68856113	68856113	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	192	445	1	ENST00000261769.5:c.1921C>T	p.Gln641Ter	p.Q641*	ENST00000261769	NM_004360.3	641	Cag/Tag						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187524146	187524146	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368616927		P-0005781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	241	606	1	ENST00000441802.2:c.11393C>T	p.Pro3798Leu	p.P3798L	ENST00000441802	NM_005245.3	3798	cCg/cTg						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64575422	64575422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	336	576	0	ENST00000337652.1:c.610C>T	p.His204Tyr	p.H204Y	ENST00000337652	NM_130803.2	204	Cac/Tac						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12043188	12043188	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	355	645	0	ENST00000353533.5:c.1073A>G	p.Tyr358Cys	p.Y358C	ENST00000353533	NM_003010.3	358	tAt/tGt						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115944	8115953	+	frameshift_variant	Frame_Shift_Del	DEL	TGGACCACAC	TGGACCACAC	-			P-0005781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	314	332	0	ENST00000346208.3:c.1290_1299del	p.Gly431ThrfsTer41	p.G431Tfs*41	ENST00000346208		430	ttTGGACCACAC/tt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0009928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	104	157	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	10032299	10032299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	144	192	0	ENST00000330684.3:c.524C>T	p.Thr175Ile	p.T175I	ENST00000330684	NM_001134407.1	175	aCt/aTt						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11141525	11141525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	196	357	0	ENST00000344626.4:c.3502G>A	p.Ala1168Thr	p.A1168T	ENST00000344626	NM_003072.3	1168	Gca/Aca						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1223003	1223003	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	142	192	0	ENST00000326873.7:c.941del	p.Pro314LeufsTer22	p.P314Lfs*22	ENST00000326873	NM_000455.4	314	Cct/ct						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37879601	37879602	+	missense_variant	Missense_Mutation	DNP	TT	TT	AA			P-0009928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	146	275	0	ENST00000269571.5:c.1976_1977inv	p.Val659Glu	p.V659E	ENST00000269571		659	gTT/gAA						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55592144	55592144	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	553	595	0	ENST00000288135.5:c.1468G>C	p.Glu490Gln	p.E490Q	ENST00000288135	NM_000222.2	490	Gaa/Caa						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66286224	66286224	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	547	574	0	ENST00000273854.3:c.1462T>A	p.Ser488Thr	p.S488T	ENST00000273854	NM_004439.5	488	Tct/Act						NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35874567	35874567	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	453	577	0	ENST00000303115.3:c.723C>G	p.Ile241Met	p.I241M	ENST00000303115	NM_002185.3	241	atC/atG						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81335732	81335732	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	476	364	0	ENST00000222390.5:c.1628A>G	p.Asp543Gly	p.D543G	ENST00000222390	NM_000601.4	543	gAt/gGt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971012	21971012	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	212	373	0	ENST00000304494.5:c.346G>T	p.Asp116Tyr	p.D116Y	ENST00000304494	NM_000077.4	116	Gac/Tac						NEWRECORD																																																																									
PAX5	5079	MSKCC	GRCh37	9	37006501	37006501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	660	562	0	ENST00000358127.4:c.444C>A	p.Asn148Lys	p.N148K	ENST00000358127	NM_001280556.1	148	aaC/aaA						NEWRECORD																																																																									
CBL	867	MSKCC	GRCh37	11	119148972	119148972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	500	526	0	ENST00000264033.4:c.1192C>A	p.His398Asn	p.H398N	ENST00000264033	NM_005188.3	398	Cac/Aac						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48937076	48937076	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	376	425	1	ENST00000267163.4:c.844G>T	p.Glu282Ter	p.E282*	ENST00000267163	NM_000321.2	282	Gaa/Taa						NEWRECORD																																																																									
NKX2-1	7080	MSKCC	GRCh37	14	36987037	36987037	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	288	324	0	ENST00000354822.5:c.652G>T	p.Ala218Ser	p.A218S	ENST00000354822	NM_001079668.2	218	Gcg/Tcg						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88420224	88420224	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	169	583	1	ENST00000360948.2:c.2462A>T	p.Tyr821Phe	p.Y821F	ENST00000360948	NM_001012338.2	821	tAc/tTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750600586		P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	569	621	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29585423	29585423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	516	562	0	ENST00000358273.4:c.4235G>A	p.Arg1412Lys	p.R1412K	ENST00000358273	NM_001042492.2	1412	aGa/aAa						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591889	48591892	+	missense_variant	Missense_Mutation	ONP	ATGG	ATGG	TTTT			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	465	643	0	ENST00000342988.3:c.1052_1055delinsTTTT	p.Asp351_Gly352delinsValLeu	p.D351_G352delinsVL	ENST00000342988	NM_005359.5	351	gATGGa/gTTTTa						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220640	1220640	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	272	673	1	ENST00000326873.7:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000326873	NM_000455.4	220	Cag/Tag						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600335	10600335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	486	591	0	ENST00000171111.5:c.1520G>T	p.Arg507Leu	p.R507L	ENST00000171111	NM_203500.1	507	cGa/cTa						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11100054	11100054	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	516	646	0	ENST00000344626.4:c.1180G>C	p.Gly394Arg	p.G394R	ENST00000344626	NM_003072.3	394	Ggg/Cgg						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9561124	9561124	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	349	420	0	ENST00000353224.5:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000353224	NM_177990.2	220	Cag/Tag						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55124922	55124922	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	511	549	0	ENST00000257290.5:c.-12-2A>T		p.X4_splice	ENST00000257290	NM_006206.4	4							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	85	455	2	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	82	583	0	ENST00000263967.3:c.3132T>G	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaG						NEWRECORD																																																																									
GSK3B	2932	MSKCC	GRCh37	3	119642269	119642269	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	43	590	0	ENST00000316626.5:c.428C>G	p.Ala143Gly	p.A143G	ENST00000316626		143	gCc/gGc						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061102	38061200	+	inframe_deletion	In_Frame_Del	DEL	TCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTC	TCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTC	-			P-0008048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	239	93	0	ENST00000250448.2:c.789_887del	p.Gln263_Asp296delinsHis	p.Q263_D296delinsH	ENST00000250448	NM_004496.3	263	caGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGCGGCCCTGAGAGCCGCAAGGAc/cac						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1278787	1278788	+	missense_variant	Missense_Mutation	DNP	TG	TG	AA			P-0008048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	44	492	0	ENST00000310581.5:c.2254_2255delinsTT	p.His752Phe	p.H752F	ENST00000310581	NM_198253.2	752	CAt/TTt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	214	307	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0007216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	403	555	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0007216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	216	472	1	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0007216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	257	624	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0007216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	337	398	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8106072	8106072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	202	349	0	ENST00000346208.3:c.892C>T	p.Arg298Trp	p.R298W	ENST00000346208		298	Cgg/Tgg						NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36932130	36932130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	83	609	0	ENST00000361632.4:c.2339T>C	p.Leu780Pro	p.L780P	ENST00000361632		780	cTc/cCc						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47166034	47166034	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	40	206	0	ENST00000409792.3:c.92A>C	p.Lys31Thr	p.K31T	ENST00000409792	NM_014159.6	31	aAg/aCg						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149513289	149513289	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	62	383	0	ENST00000261799.4:c.794T>C	p.Leu265Pro	p.L265P	ENST00000261799	NM_002609.3	265	cTc/cCc						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50450293	50450293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	161	516	0	ENST00000331340.3:c.477C>A	p.Asn159Lys	p.N159K	ENST00000331340	NM_006060.4	159	aaC/aaA						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602575	10602575	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	43	444	0	ENST00000171111.5:c.1003T>G	p.Phe335Val	p.F335V	ENST00000171111	NM_203500.1	335	Ttc/Gtc						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63526104	63526104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	498	416	2	ENST00000307078.5:c.2522G>A	p.Arg841Gln	p.R841Q	ENST00000307078	NM_004655.3	841	cGg/cAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175852	112175852	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	370	325	0	ENST00000257430.4:c.4561G>T	p.Glu1521Ter	p.E1521*	ENST00000257430	NM_000038.5	1521	Gaa/Taa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578226	7578226	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1464727668		P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	554	491	0	ENST00000269305.4:c.623A>T	p.Asp208Val	p.D208V	ENST00000269305	NM_001126112.2	208	gAc/gTc						NEWRECORD																																																																									
NFKBIA	4792	MSKCC	GRCh37	14	35871728	35871728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	371	607	1	ENST00000216797.5:c.778C>T	p.Arg260Cys	p.R260C	ENST00000216797	NM_020529.2	260	Cgc/Tgc						NEWRECORD																																																																									
KMT2D	8085	MSKCC	GRCh37	12	49420289	49420289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768551828		P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	447	380	0	ENST00000301067.7:c.15460C>T	p.Arg5154Trp	p.R5154W	ENST00000301067	NM_003482.3	5154	Cgg/Tgg						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120548014	120548014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			58	10	34	0	ENST00000256646.2:c.353G>T	p.Gly118Val	p.G118V	ENST00000256646	NM_024408.3	118	gGc/gTc						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99172194	99172194	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	479	388	2	ENST00000074304.5:c.1760A>G	p.Asp587Gly	p.D587G	ENST00000074304	NM_001134224.1	587	gAc/gGc						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55564484	55564484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	207	306	0	ENST00000288135.5:c.372G>C	p.Leu124Phe	p.L124F	ENST00000288135	NM_000222.2	124	ttG/ttC						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55961104	55961104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	241	399	0	ENST00000263923.4:c.2836C>A	p.Arg946Ser	p.R946S	ENST00000263923	NM_002253.2	946	Cgt/Agt						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55973974	55973974	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	171	333	0	ENST00000263923.4:c.1342T>A	p.Tyr448Asn	p.Y448N	ENST00000263923	NM_002253.2	448	Tat/Aat						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66213902	66213902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	149	483	0	ENST00000273854.3:c.2528G>A	p.Arg843Lys	p.R843K	ENST00000273854	NM_004439.5	843	aGa/aAa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187524462	187524462	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	223	304	1	ENST00000441802.2:c.11218G>T	p.Gly3740Ter	p.G3740*	ENST00000441802	NM_005245.3	3740	Gga/Tga						NEWRECORD																																																																									
HIST1H3E	8353	MSKCC	GRCh37	6	26225431	26225431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1136	829	769	0	ENST00000360408.1:c.49C>A	p.Pro17Thr	p.P17T	ENST00000360408	NM_003532.2	17	Ccg/Acg						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32170294	32170294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	353	241	1	ENST00000375023.3:c.3314C>T	p.Ser1105Phe	p.S1105F	ENST00000375023	NM_004557.3	1105	tCc/tTc						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2977584	2977584	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	285	397	1	ENST00000396946.4:c.1100C>A	p.Thr367Lys	p.T367K	ENST00000396946	NM_032415.4	367	aCg/aAg						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81374430	81374430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	349	331	0	ENST00000222390.5:c.632G>C	p.Cys211Ser	p.C211S	ENST00000222390	NM_000601.4	211	tGc/tCc						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55372212	55372212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	170	91	2	ENST00000297316.4:c.902G>T	p.Gly301Val	p.G301V	ENST00000297316	NM_022454.3	301	gGc/gTc						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	430254	430254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	415	439	0	ENST00000399788.2:c.2448G>T	p.Arg816Ser	p.R816S	ENST00000399788	NM_001042603.1	816	agG/agT						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10249116	10249116	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	260	459	0	ENST00000340748.4:c.4066A>G	p.Arg1356Gly	p.R1356G	ENST00000340748		1356	Agg/Ggg						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41573177	41573177	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	348	247	0	ENST00000263253.7:c.5462G>T	p.Arg1821Leu	p.R1821L	ENST00000263253	NM_001429.3	1821	cGa/cTa						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47038895	47038895	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	45	69	0	ENST00000329236.7:c.670+1G>T		p.X224_splice	ENST00000329236	NM_001204466.1	224							NEWRECORD																																																																									
GATA1	2623	MSKCC	GRCh37	X	48649587	48649587	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	668	572	1	ENST00000376670.3:c.71T>A	p.Val24Glu	p.V24E	ENST00000376670	NM_002049.3	24	gTg/gAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	231	443	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0006643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	143	378	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa						NEWRECORD																																																																									
PLK2	10769	MSKCC	GRCh37	5	57751132	57751132	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	305	355	0	ENST00000274289.3:c.1735A>G	p.Met579Val	p.M579V	ENST00000274289	NM_006622.3	579	Atg/Gtg						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508281	106508281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	60	244	0	ENST00000359195.3:c.275G>T	p.Gly92Val	p.G92V	ENST00000359195	NM_002649.2	92	gGa/gTa						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30675692	30675695	+	frameshift_variant	Frame_Shift_Del	DEL	CTCC	CTCC	-			P-0006643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1918	137	534	0	ENST00000376406.3:c.2661_2664del	p.Glu888ValfsTer2	p.E888Vfs*2	ENST00000376406	NM_014641.2	887	agGGAG/ag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	151	202	0	ENST00000269305.4:c.528C>A	p.Cys176Ter	p.C176*	ENST00000269305	NM_001126112.2	176	tgC/tgA						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2985451	2985451	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0006864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1122	67	234	0	ENST00000396946.4:c.358+2T>C		p.X120_splice	ENST00000396946	NM_032415.4	120							NEWRECORD																																																																									
ERRFI1	54206	MSKCC	GRCh37	1	8073422	8073422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1462	394	610	1	ENST00000377482.5:c.1237G>A	p.Glu413Lys	p.E413K	ENST00000377482	NM_018948.3	413	Gaa/Aaa						NEWRECORD																																																																									
PIK3CD	5293	MSKCC	GRCh37	1	9777652	9777652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			896	52	347	0	ENST00000377346.4:c.988G>A	p.Gly330Ser	p.G330S	ENST00000377346	NM_005026.3	330	Ggc/Agc						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11181324	11181324	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			792	213	316	0	ENST00000361445.4:c.6912G>A	p.Trp2304Ter	p.W2304*	ENST00000361445	NM_004958.3	2304	tgG/tgA						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11182065	11182065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			734	255	284	0	ENST00000361445.4:c.6781C>T	p.Leu2261Phe	p.L2261F	ENST00000361445	NM_004958.3	2261	Ctc/Ttc						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16254590	16254590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1192	98	456	0	ENST00000375759.3:c.1855G>A	p.Glu619Lys	p.E619K	ENST00000375759	NM_015001.2	619	Gaa/Aaa						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16263913	16263913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			918	239	366	0	ENST00000375759.3:c.10282C>T	p.Pro3428Ser	p.P3428S	ENST00000375759	NM_015001.2	3428	Ccg/Tcg						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27100115	27100115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			845	278	328	0	ENST00000324856.7:c.3911C>T	p.Ala1304Val	p.A1304V	ENST00000324856	NM_006015.4	1304	gCc/gTc						NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36932200	36932200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	324	463	0	ENST00000361632.4:c.2269G>A	p.Gly757Ser	p.G757S	ENST00000361632		757	Ggc/Agc						NEWRECORD																																																																									
PIK3R3	8503	MSKCC	GRCh37	1	46543281	46543281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			902	196	382	0	ENST00000262741.5:c.220G>A	p.Glu74Lys	p.E74K	ENST00000262741	NM_003629.3	74	Gag/Aag						NEWRECORD																																																																									
JUN	3725	MSKCC	GRCh37	1	59247782	59247782	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	356	492	2	ENST00000371222.2:c.961C>T	p.Gln321Ter	p.Q321*	ENST00000371222	NM_002228.3	321	Caa/Taa						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65325897	65325897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			784	230	248	1	ENST00000342505.4:c.1225G>A	p.Val409Ile	p.V409I	ENST00000342505	NM_002227.2	409	Gta/Ata						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			917	75	298	0	ENST00000369535.4:c.37G>A	p.Gly13Ser	p.G13S	ENST00000369535	NM_002524.4	13	Ggt/Agt						NEWRECORD																																																																									
VTCN1	79679	MSKCC	GRCh37	1	117695712	117695712	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			846	207	437	1	ENST00000369458.3:c.724+1G>A		p.X242_splice	ENST00000369458	NM_024626.3	242							NEWRECORD																																																																									
MCL1	4170	MSKCC	GRCh37	1	150551831	150551831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			199	66	83	0	ENST00000369026.2:c.176G>A	p.Gly59Glu	p.G59E	ENST00000369026	NM_021960.4	59	gGa/gAa						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162731226	162731226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			880	66	274	0	ENST00000367921.3:c.1081G>A	p.Glu361Lys	p.E361K	ENST00000367921	NM_006182.2	361	Gag/Aag						NEWRECORD																																																																									
IKBKE	9641	MSKCC	GRCh37	1	206658574	206658574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			966	75	294	0	ENST00000367120.3:c.1547C>T	p.Thr516Ile	p.T516I	ENST00000367120	NM_014002.3	516	aCc/aTc						NEWRECORD																																																																									
H3F3A	3020	MSKCC	GRCh37	1	226253472	226253472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			547	40	175	0	ENST00000366813.1:c.244G>A	p.Asp82Asn	p.D82N	ENST00000366813		82	Gat/Aat						NEWRECORD																																																																									
FH	2271	MSKCC	GRCh37	1	241675293	241675293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			893	260	364	0	ENST00000366560.3:c.529C>T	p.Pro177Ser	p.P177S	ENST00000366560	NM_000143.3	177	Ccc/Tcc						NEWRECORD																																																																									
MYCN	4613	MSKCC	GRCh37	2	16085638	16085638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			829	73	266	0	ENST00000281043.3:c.814G>A	p.Asp272Asn	p.D272N	ENST00000281043	NM_005378.4	272	Gat/Aat						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25462035	25462035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	85	341	0	ENST00000264709.3:c.2372C>T	p.Ala791Val	p.A791V	ENST00000264709	NM_175629.2	791	gCc/gTc						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25990512	25990512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			879	236	394	0	ENST00000435504.4:c.715G>A	p.Glu239Lys	p.E239K	ENST00000435504		239	Gaa/Aaa						NEWRECORD																																																																									
MSH2	4436	MSKCC	GRCh37	2	47707933	47707933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			853	247	349	0	ENST00000233146.2:c.2557G>A	p.Glu853Lys	p.E853K	ENST00000233146	NM_000251.2	853	Gag/Aag						NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48033952	48033952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			713	61	279	0	ENST00000234420.5:c.4036G>A	p.Asp1346Asn	p.D1346N	ENST00000234420	NM_000179.2	1346	Gat/Aat						NEWRECORD																																																																									
XPO1	7514	MSKCC	GRCh37	2	61721145	61721145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			867	264	387	0	ENST00000401558.2:c.1129G>A	p.Ala377Thr	p.A377T	ENST00000401558	NM_003400.3	377	Gct/Act						NEWRECORD																																																																									
ERCC3	2071	MSKCC	GRCh37	2	128051163	128051163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1068	66	337	1	ENST00000285398.2:c.160G>A	p.Asp54Asn	p.D54N	ENST00000285398	NM_000122.1	54	Gat/Aat						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212578314	212578314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			866	54	362	0	ENST00000342788.4:c.943G>A	p.Val315Ile	p.V315I	ENST00000342788	NM_005235.2	315	Gta/Ata						NEWRECORD																																																																									
INHA	3623	MSKCC	GRCh37	2	220439632	220439632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			985	275	445	0	ENST00000243786.2:c.485C>T	p.Pro162Leu	p.P162L	ENST00000243786	NM_002191.3	162	cCc/cTc						NEWRECORD																																																																									
MLH1	4292	MSKCC	GRCh37	3	37067228	37067228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	90	354	0	ENST00000231790.2:c.1139C>T	p.Ala380Val	p.A380V	ENST00000231790	NM_000249.3	380	gCc/gTc						NEWRECORD																																																																									
MYD88	4615	MSKCC	GRCh37	3	38180399	38180399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			755	202	292	0	ENST00000396334.3:c.247C>T	p.Pro83Ser	p.P83S	ENST00000396334	NM_002468.4	83	Ccc/Tcc						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47162103	47162103	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			886	63	280	0	ENST00000409792.3:c.4023G>A	p.Trp1341Ter	p.W1341*	ENST00000409792	NM_014159.6	1341	tgG/tgA						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47162267	47162267	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	75	336	0	ENST00000409792.3:c.3859C>T	p.Gln1287Ter	p.Q1287*	ENST00000409792	NM_014159.6	1287	Cag/Tag						NEWRECORD																																																																									
RYBP	23429	MSKCC	GRCh37	3	72428228	72428228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1193	66	425	0	ENST00000477973.2:c.662G>A	p.Ala222Thr	p.A222T	ENST00000477973	NM_012234.5	222	Gct/Act						NEWRECORD																																																																									
BCL6	604	MSKCC	GRCh37	3	187447268	187447268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			650	170	217	0	ENST00000232014.4:c.925G>A	p.Glu309Lys	p.E309K	ENST00000232014	NM_001130845.1	309	Gaa/Aaa						NEWRECORD																																																																									
BCL6	604	MSKCC	GRCh37	3	187447321	187447321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			564	160	217	1	ENST00000232014.4:c.872C>T	p.Ala291Val	p.A291V	ENST00000232014	NM_001130845.1	291	gCc/gTc						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189456471	189456471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1157	62	427	0	ENST00000264731.3:c.232G>A	p.Asp78Asn	p.D78N	ENST00000264731	NM_003722.4	78	Gat/Aat						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55565892	55565892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1490	233	375	0	ENST00000288135.5:c.716C>T	p.Ser239Phe	p.S239F	ENST00000288135	NM_000222.2	239	tCt/tTt						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55958882	55958882	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	179	262	0	ENST00000263923.4:c.2972-1G>A		p.X991_splice	ENST00000263923	NM_002253.2	991							NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66201797	66201797	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1436	222	290	0	ENST00000273854.3:c.2705A>T	p.Asp902Val	p.D902V	ENST00000273854	NM_004439.5	902	gAt/gTt						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66467532	66467532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1640	303	335	0	ENST00000273854.3:c.737C>T	p.Thr246Ile	p.T246I	ENST00000273854	NM_004439.5	246	aCc/aTc						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106193739	106193739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			444	122	161	0	ENST00000380013.4:c.4201G>A	p.Glu1401Lys	p.E1401K	ENST00000380013	NM_001127208.2	1401	Gaa/Aaa						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1264595	1264595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1117	62	363	0	ENST00000310581.5:c.2767C>T	p.Pro923Ser	p.P923S	ENST00000310581	NM_198253.2	923	Ccg/Tcg						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1294252	1294252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			487	32	181	1	ENST00000310581.5:c.749C>T	p.Pro250Leu	p.P250L	ENST00000310581	NM_198253.2	250	cCc/cTc						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38967523	38967523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			760	235	337	0	ENST00000357387.3:c.1067G>A	p.Gly356Glu	p.G356E	ENST00000357387	NM_152756.3	356	gGg/gAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112178985	112178985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			828	51	289	0	ENST00000257430.4:c.7694G>A	p.Arg2565Lys	p.R2565K	ENST00000257430	NM_000038.5	2565	aGa/aAa						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131939102	131939102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			782	215	417	0	ENST00000265335.6:c.2318C>T	p.Thr773Ile	p.T773I	ENST00000265335		773	aCa/aTa						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149459662	149459662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			774	248	330	0	ENST00000286301.3:c.545G>A	p.Gly182Asp	p.G182D	ENST00000286301	NM_005211.3	182	gGt/gAt						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176562768	176562768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	84	382	0	ENST00000439151.2:c.664G>A	p.Val222Ile	p.V222I	ENST00000439151	NM_022455.4	222	Gtc/Atc						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176721306	176721306	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			546	168	229	0	ENST00000439151.2:c.6937C>T	p.Gln2313Ter	p.Q2313*	ENST00000439151	NM_022455.4	2313	Cag/Tag						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32163642	32163642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			548	42	158	0	ENST00000375023.3:c.5584C>T	p.Arg1862Trp	p.R1862W	ENST00000375023	NM_004557.3	1862	Cgg/Tgg						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32178554	32178554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			802	109	306	0	ENST00000375023.3:c.2840C>T	p.Ala947Val	p.A947V	ENST00000375023	NM_004557.3	947	gCc/gTc						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32184998	32184998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	66	324	1	ENST00000375023.3:c.1670G>A	p.Ser557Asn	p.S557N	ENST00000375023	NM_004557.3	557	aGc/aAc						NEWRECORD																																																																									
DAXX	1616	MSKCC	GRCh37	6	33288602	33288602	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			281	427	204	0	ENST00000374542.5:c.950T>C	p.Phe317Ser	p.F317S	ENST00000374542	NM_001141970.1	317	tTc/tCc						NEWRECORD																																																																									
PNRC1	10957	MSKCC	GRCh37	6	89791095	89791095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			100	12	28	0	ENST00000336032.3:c.482G>A	p.Ser161Asn	p.S161N	ENST00000336032	NM_006813.2	161	aGc/aAc						NEWRECORD																																																																									
FYN	2534	MSKCC	GRCh37	6	112017543	112017543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1258	361	477	0	ENST00000368678.4:c.970G>A	p.Val324Ile	p.V324I	ENST00000368678		324	Gtc/Atc						NEWRECORD																																																																									
TNFAIP3	7128	MSKCC	GRCh37	6	138199930	138199930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			500	68	167	0	ENST00000237289.4:c.1348C>T	p.Pro450Ser	p.P450S	ENST00000237289	NM_001270507.1	450	Cct/Tct						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150005291	150005291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1100	85	372	0	ENST00000253339.5:c.934C>T	p.Pro312Ser	p.P312S	ENST00000253339		312	Cct/Tct						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150005641	150005641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			700	189	290	0	ENST00000253339.5:c.584G>A	p.Gly195Glu	p.G195E	ENST00000253339		195	gGa/gAa						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150016329	150016329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			942	279	427	0	ENST00000253339.5:c.377C>T	p.Thr126Ile	p.T126I	ENST00000253339		126	aCt/aTt						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157099892	157099892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			872	54	340	0	ENST00000346085.5:c.829C>T	p.Pro277Ser	p.P277S	ENST00000346085	NM_020732.3	277	Ccc/Tcc						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157256607	157256607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1042	63	385	0	ENST00000346085.5:c.1934C>T	p.Ser645Phe	p.S645F	ENST00000346085	NM_020732.3	645	tCt/tTt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55219020	55219020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1505	272	360	0	ENST00000275493.2:c.593G>A	p.Ser198Asn	p.S198N	ENST00000275493	NM_005228.3	198	aGc/aAc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55260472	55260472	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1741	292	424	0	ENST00000275493.2:c.2639G>A	p.Trp880Ter	p.W880*	ENST00000275493	NM_005228.3	880	tGg/tAg						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116411666	116411666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1395	261	377	0	ENST00000397752.3:c.2845C>T	p.Leu949Phe	p.L949F	ENST00000397752	NM_000245.2	949	Ctt/Ttt						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116435757	116435757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1572	224	321	0	ENST00000397752.3:c.3847C>T	p.Pro1283Ser	p.P1283S	ENST00000397752	NM_000245.2	1283	Cct/Tct						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151849987	151849987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1255	234	308	1	ENST00000262189.6:c.12329C>T	p.Pro4110Leu	p.P4110L	ENST00000262189	NM_170606.2	4110	cCt/cTt						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151851388	151851388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1584	98	359	0	ENST00000262189.6:c.12103C>T	p.Pro4035Ser	p.P4035S	ENST00000262189	NM_170606.2	4035	Ccc/Tcc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151851460	151851460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1658	179	408	0	ENST00000262189.6:c.12031G>A	p.Val4011Ile	p.V4011I	ENST00000262189	NM_170606.2	4011	Gtt/Att						NEWRECORD																																																																									
FGFR1	2260	MSKCC	GRCh37	8	38271525	38271525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			907	77	373	0	ENST00000425967.3:c.2296G>A	p.Asp766Asn	p.D766N	ENST00000425967	NM_001174067.1	766	Gac/Aac						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55371953	55371953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			287	99	108	0	ENST00000297316.4:c.643G>A	p.Asp215Asn	p.D215N	ENST00000297316	NM_022454.3	215	Gac/Aac						NEWRECORD																																																																									
RAD21	5885	MSKCC	GRCh37	8	117864306	117864306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	97	425	0	ENST00000297338.2:c.1351C>T	p.Leu451Phe	p.L451F	ENST00000297338	NM_006265.2	451	Ctc/Ttc						NEWRECORD																																																																									
RAD21	5885	MSKCC	GRCh37	8	117866494	117866494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1185	106	434	0	ENST00000297338.2:c.1151G>A	p.Arg384Lys	p.R384K	ENST00000297338	NM_006265.2	384	aGa/aAa						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5044467	5044467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1914	190	427	1	ENST00000381652.3:c.415G>A	p.Gly139Ser	p.G139S	ENST00000381652	NM_004972.3	139	Ggt/Agt						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8486206	8486206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			857	273	358	0	ENST00000356435.5:c.2611C>T	p.Leu871Phe	p.L871F	ENST00000356435		871	Ctt/Ttt						NEWRECORD																																																																									
GNAQ	2776	MSKCC	GRCh37	9	80412545	80412545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			794	206	324	0	ENST00000286548.4:c.496C>T	p.Arg166Cys	p.R166C	ENST00000286548	NM_002072.3	166	Cgc/Tgc						NEWRECORD																																																																									
SYK	6850	MSKCC	GRCh37	9	93607731	93607731	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			674	213	281	0	ENST00000375746.1:c.433C>T	p.Gln145Ter	p.Q145*	ENST00000375746	NM_001174167.1	145	Cag/Tag						NEWRECORD																																																																									
PPP6C	5537	MSKCC	GRCh37	9	127915850	127915850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1444	119	511	0	ENST00000373547.4:c.631G>A	p.Gly211Arg	p.G211R	ENST00000373547	NM_002721.4	211	Gga/Aga						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133729468	133729468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			688	193	260	0	ENST00000318560.5:c.97G>A	p.Val33Ile	p.V33I	ENST00000318560	NM_005157.4	33	Gta/Ata						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133760607	133760607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			928	291	373	0	ENST00000318560.5:c.2930G>A	p.Ser977Asn	p.S977N	ENST00000318560	NM_005157.4	977	aGc/aAc						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135786050	135786050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			753	227	272	0	ENST00000298552.3:c.1171C>T	p.Pro391Ser	p.P391S	ENST00000298552	NM_001162426.1	391	Cca/Tca						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139391776	139391776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			600	39	196	0	ENST00000277541.6:c.6415C>T	p.Leu2139Phe	p.L2139F	ENST00000277541	NM_017617.3	2139	Ctc/Ttc						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139411838	139411838	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			728	227	285	0	ENST00000277541.6:c.1442-1G>A		p.X481_splice	ENST00000277541	NM_017617.3	481							NEWRECORD																																																																									
TRAF2	7186	MSKCC	GRCh37	9	139804421	139804421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	266	440	1	ENST00000247668.2:c.578G>A	p.Gly193Asp	p.G193D	ENST00000247668	NM_021138.3	193	gGc/gAc						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63759891	63759891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	123	377	0	ENST00000279873.7:c.544C>T	p.Pro182Ser	p.P182S	ENST00000279873	NM_032199.2	182	Ccc/Tcc						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70405299	70405299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1039	65	335	0	ENST00000373644.4:c.2813G>A	p.Arg938Lys	p.R938K	ENST00000373644	NM_030625.2	938	aGa/aAa						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70405848	70405848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1043	284	420	0	ENST00000373644.4:c.3362G>A	p.Gly1121Asp	p.G1121D	ENST00000373644	NM_030625.2	1121	gGc/gAc						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70412263	70412263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1148	69	405	0	ENST00000373644.4:c.4373G>A	p.Gly1458Asp	p.G1458D	ENST00000373644	NM_030625.2	1458	gGt/gAt						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89685281	89685281	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			267	321	247	0	ENST00000371953.3:c.176C>A	p.Ser59Ter	p.S59*	ENST00000371953	NM_000314.4	59	tCa/tAa						NEWRECORD																																																																									
FGFR2	2263	MSKCC	GRCh37	10	123276956	123276956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			842	79	267	0	ENST00000358487.5:c.961G>A	p.Asp321Asn	p.D321N	ENST00000358487	NM_000141.4	321	Gac/Aac						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64572261	64572261	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			450	643	358	1	ENST00000337652.1:c.1393C>T	p.Arg465Ter	p.R465*	ENST00000337652	NM_130803.2	465	Cga/Tga						NEWRECORD																																																																									
EED	8726	MSKCC	GRCh37	11	85968612	85968612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	71	404	0	ENST00000263360.6:c.608C>T	p.Pro203Leu	p.P203L	ENST00000263360	NM_003797.3	203	cCa/cTa						NEWRECORD																																																																									
YAP1	10413	MSKCC	GRCh37	11	102100531	102100531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			955	293	341	0	ENST00000282441.5:c.1375G>A	p.Glu459Lys	p.E459K	ENST00000282441	NM_001130145.2	459	Gaa/Aaa						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108201099	108201099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			702	188	281	2	ENST00000278616.4:c.7466C>T	p.Ser2489Phe	p.S2489F	ENST00000278616	NM_000051.3	2489	tCc/tTc						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118343369	118343369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			825	79	297	0	ENST00000534358.1:c.1495C>T	p.Leu499Phe	p.L499F	ENST00000534358	NM_005933.3	499	Ctt/Ttt						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118344620	118344620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	326	474	1	ENST00000534358.1:c.2746G>A	p.Val916Ile	p.V916I	ENST00000534358	NM_005933.3	916	Gtt/Att						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118348826	118348826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1082	83	368	2	ENST00000534358.1:c.3479G>A	p.Gly1160Asp	p.G1160D	ENST00000534358	NM_005933.3	1160	gGc/gAc						NEWRECORD																																																																									
CBL	867	MSKCC	GRCh37	11	119170204	119170204	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			771	57	256	0	ENST00000264033.4:c.2435-1G>A		p.X812_splice	ENST00000264033	NM_005188.3	812							NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	475252	475252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1359	219	381	0	ENST00000399788.2:c.385G>A	p.Gly129Ser	p.G129S	ENST00000399788	NM_001042603.1	129	Ggt/Agt						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	493269	493269	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1734	290	462	2	ENST00000399788.2:c.294G>A	p.Trp98Ter	p.W98*	ENST00000399788	NM_001042603.1	98	tgG/tgA						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18446891	18446891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1381	204	434	0	ENST00000266497.5:c.976C>T	p.Gln326Ter	p.Q326*	ENST00000266497		326	Cag/Tag						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18715756	18715756	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs950782237		P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1494	230	376	0	ENST00000266497.5:c.3587C>T	p.Ser1196Phe	p.S1196F	ENST00000266497		1196	tCc/tTc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380271	25380271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1716	250	400	0	ENST00000256078.4:c.187G>A	p.Glu63Lys	p.E63K	ENST00000256078	NM_033360.2	63	Gag/Aag						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46246458	46246458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1675	233	422	1	ENST00000334344.6:c.4552C>T	p.Pro1518Ser	p.P1518S	ENST00000334344	NM_152641.2	1518	Cca/Tca						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46254671	46254671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1983	117	433	0	ENST00000334344.6:c.4861C>T	p.Pro1621Ser	p.P1621S	ENST00000334344	NM_152641.2	1621	Cct/Tct						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46298802	46298802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1504	238	384	1	ENST00000334344.6:c.5449G>A	p.Glu1817Lys	p.E1817K	ENST00000334344	NM_152641.2	1817	Gaa/Aaa						NEWRECORD																																																																									
HNF1A	6927	MSKCC	GRCh37	12	121435468	121435468	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1423	87	311	1	ENST00000257555.6:c.1501G>A	p.Ala501Thr	p.A501T	ENST00000257555		501	Gcc/Acc						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133237629	133237629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1577	94	400	0	ENST00000320574.5:c.2986G>A	p.Gly996Ser	p.G996S	ENST00000320574	NM_006231.2	996	Ggc/Agc						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133245240	133245240	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1271	147	292	2	ENST00000320574.5:c.2007G>A	p.Trp669Ter	p.W669*	ENST00000320574	NM_006231.2	669	tgG/tgA						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21563318	21563318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1365	227	359	0	ENST00000382592.4:c.601C>T	p.Pro201Ser	p.P201S	ENST00000382592	NM_014572.2	201	Ccc/Tcc						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32913575	32913575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1983	205	518	2	ENST00000380152.3:c.5083G>A	p.Glu1695Lys	p.E1695K	ENST00000380152		1695	Gaa/Aaa						NEWRECORD																																																																									
FOXO1	2308	MSKCC	GRCh37	13	41134768	41134768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1952	339	479	0	ENST00000379561.5:c.860G>A	p.Ser287Asn	p.S287N	ENST00000379561	NM_002015.3	287	aGc/aAc						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110435114	110435114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			877	47	195	0	ENST00000375856.3:c.3287C>T	p.Ala1096Val	p.A1096V	ENST00000375856	NM_003749.2	1096	gCc/gTc						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110435772	110435772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			226	47	46	0	ENST00000375856.3:c.2629C>T	p.Pro877Ser	p.P877S	ENST00000375856	NM_003749.2	877	Ccg/Tcg						NEWRECORD																																																																									
NKX2-1	7080	MSKCC	GRCh37	14	36987226	36987226	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			606	92	135	0	ENST00000354822.5:c.464-1G>A		p.X155_splice	ENST00000354822	NM_001079668.2	155							NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061147	38061147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			334	20	66	0	ENST00000250448.2:c.842G>A	p.Gly281Glu	p.G281E	ENST00000250448	NM_004496.3	281	gGa/gAa						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42042196	42042196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1225	350	543	0	ENST00000219905.7:c.6391C>T	p.Pro2131Ser	p.P2131S	ENST00000219905	NM_001164273.1	2131	Cca/Tca						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67358542	67358542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			845	47	272	0	ENST00000327367.4:c.50G>A	p.Gly17Asp	p.G17D	ENST00000327367	NM_005902.3	17	gGc/gAc						NEWRECORD																																																																									
CD276	80381	MSKCC	GRCh37	15	73996200	73996200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			506	154	200	0	ENST00000318443.5:c.934G>A	p.Ala312Thr	p.A312T	ENST00000318443	NM_001024736.1	312	Gcc/Acc						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91334051	91334051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			872	46	290	0	ENST00000355112.3:c.2996C>T	p.Thr999Ile	p.T999I	ENST00000355112	NM_000057.2	999	aCc/aTc						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99434697	99434697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			733	255	315	0	ENST00000268035.6:c.784C>T	p.Pro262Ser	p.P262S	ENST00000268035	NM_000875.3	262	Cct/Tct						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99467859	99467859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	73	358	0	ENST00000268035.6:c.2728C>T	p.Leu910Phe	p.L910F	ENST00000268035	NM_000875.3	910	Ctc/Ttc						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	339439	339439	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			806	114	344	0	ENST00000262320.3:c.2462+1G>A		p.X821_splice	ENST00000262320	NM_003502.3	821							NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2106696	2106696	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			487	717	377	2	ENST00000219476.3:c.700G>T	p.Glu234Ter	p.E234*	ENST00000219476	NM_000548.3	234	Gag/Tag						NEWRECORD																																																																									
TRAF7	84231	MSKCC	GRCh37	16	2226342	2226342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			952	79	320	0	ENST00000326181.6:c.1955C>T	p.Ser652Phe	p.S652F	ENST00000326181	NM_032271.2	652	tCc/tTc						NEWRECORD																																																																									
PDPK1	5170	MSKCC	GRCh37	16	2647222	2647222	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1072	131	393	1	ENST00000342085.4:c.1500G>A	p.Trp500Ter	p.W500*	ENST00000342085	NM_002613.4	500	tgG/tgA						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3779058	3779058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			647	43	209	0	ENST00000262367.5:c.5990C>T	p.Pro1997Leu	p.P1997L	ENST00000262367	NM_004380.2	1997	cCc/cTc						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3779196	3779196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			400	94	151	0	ENST00000262367.5:c.5852C>T	p.Pro1951Leu	p.P1951L	ENST00000262367	NM_004380.2	1951	cCc/cTc						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	10274027	10274027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			978	54	382	0	ENST00000330684.3:c.242G>A	p.Ser81Asn	p.S81N	ENST00000330684	NM_001134407.1	81	aGc/aAc						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67660553	67660553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1308	91	445	2	ENST00000264010.4:c.1453C>T	p.His485Tyr	p.H485Y	ENST00000264010	NM_006565.3	485	Cat/Tat						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72821152	72821152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1288	81	445	0	ENST00000268489.5:c.11023C>T	p.Pro3675Ser	p.P3675S	ENST00000268489	NM_006885.3	3675	Ccg/Tcg						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72822541	72822541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	70	380	0	ENST00000268489.5:c.9634C>T	p.Pro3212Ser	p.P3212S	ENST00000268489	NM_006885.3	3212	Ccg/Tcg						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72992732	72992732	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200794923		P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1121	311	461	1	ENST00000268489.5:c.1313C>T	p.Ala438Val	p.A438V	ENST00000268489	NM_006885.3	438	gCg/gTg						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89348158	89348158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1460	93	536	0	ENST00000301030.4:c.4792C>T	p.His1598Tyr	p.H1598Y	ENST00000301030	NM_001256183.1	1598	Cac/Tac						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89371683	89371683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1202	99	367	2	ENST00000301030.4:c.157G>A	p.Glu53Lys	p.E53K	ENST00000301030	NM_001256183.1	53	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			716	26	212	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15974943	15974943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1562	252	406	0	ENST00000268712.3:c.3932G>A	p.Gly1311Asp	p.G1311D	ENST00000268712	NM_006311.3	1311	gGc/gAc						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37649105	37649105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1451	253	310	1	ENST00000447079.4:c.2210C>T	p.Thr737Ile	p.T737I	ENST00000447079	NM_015083.1	737	aCc/aTc						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37686947	37686947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1563	101	354	1	ENST00000447079.4:c.3851G>A	p.Gly1284Asp	p.G1284D	ENST00000447079	NM_015083.1	1284	gGc/gAc						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37868262	37868262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1455	224	329	0	ENST00000269571.5:c.983C>T	p.Thr328Ile	p.T328I	ENST00000269571		328	aCa/aTa						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37882913	37882913	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs112493843		P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1271	210	341	1	ENST00000269571.5:c.2970+1G>A		p.X990_splice	ENST00000269571		990							NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37883770	37883770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1618	284	399	0	ENST00000269571.5:c.3382G>A	p.Val1128Ile	p.V1128I	ENST00000269571		1128	Gtt/Att						NEWRECORD																																																																									
STAT5B	6777	MSKCC	GRCh37	17	40354430	40354430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			2042	382	533	0	ENST00000293328.3:c.2165G>A	p.Ser722Asn	p.S722N	ENST00000293328	NM_012448.3	722	aGc/aAc						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47688819	47688819	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1315	91	239	0	ENST00000347630.2:c.481G>A	p.Val161Met	p.V161M	ENST00000347630	NM_001007230.1	161	Gtg/Atg						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63533467	63533467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1231	203	264	0	ENST00000307078.5:c.1687G>A	p.Glu563Lys	p.E563K	ENST00000307078	NM_004655.3	563	Gaa/Aaa						NEWRECORD																																																																									
SRSF2	6427	MSKCC	GRCh37	17	74733208	74733208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1542	88	370	0	ENST00000359995.5:c.35G>A	p.Gly12Asp	p.G12D	ENST00000359995	NM_001195427.1	12	gGt/gAt						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39575854	39575854	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			619	197	256	0	ENST00000262039.4:c.787G>A	p.Glu263Lys	p.E263K	ENST00000262039	NM_002647.2	263	Gag/Aag						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2211782	2211782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1245	104	417	0	ENST00000398665.3:c.1498G>A	p.Ala500Thr	p.A500T	ENST00000398665	NM_032482.2	500	Gca/Aca						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10248549	10248549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			848	266	339	1	ENST00000340748.4:c.4204G>A	p.Gly1402Ser	p.G1402S	ENST00000340748		1402	Ggc/Agc						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15290896	15290896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1828	278	457	1	ENST00000263388.2:c.3314G>A	p.Gly1105Asp	p.G1105D	ENST00000263388	NM_000435.2	1105	gGc/gAc						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15375214	15375214	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			868	158	168	0	ENST00000263377.2:c.1212+1G>A		p.X404_splice	ENST00000263377	NM_058243.2	404							NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17942055	17942055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1238	206	325	1	ENST00000458235.1:c.2960G>A	p.Gly987Asp	p.G987D	ENST00000458235	NM_000215.3	987	gGc/gAc						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17952226	17952226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1099	179	230	0	ENST00000458235.1:c.1114G>A	p.Val372Met	p.V372M	ENST00000458235	NM_000215.3	372	Gtg/Atg						NEWRECORD																																																																									
MEF2B	100271849	MSKCC	GRCh37	19	19257615	19257615	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139889780		P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1406	234	320	0	ENST00000162023.5:c.611C>T	p.Thr204Met	p.T204M	ENST00000162023		204	aCg/aTg						NEWRECORD																																																																									
SRC	6714	MSKCC	GRCh37	20	36030049	36030049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1516	109	312	0	ENST00000358208.4:c.1084C>T	p.Arg362Trp	p.R362W	ENST00000358208		362	Cgg/Tgg						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57485137	57485137	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1185	91	251	0	ENST00000371085.3:c.970+1G>A		p.X324_splice	ENST00000371085	NM_000516.4	324							NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41489045	41489045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			865	271	322	0	ENST00000263253.7:c.37G>A	p.Ala13Thr	p.A13T	ENST00000263253	NM_001429.3	13	Gcc/Acc						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41536175	41536175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			902	236	356	0	ENST00000263253.7:c.1792G>A	p.Ala598Thr	p.A598T	ENST00000263253	NM_001429.3	598	Gct/Act						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41574035	41574035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			543	172	251	1	ENST00000263253.7:c.6320C>T	p.Pro2107Leu	p.P2107L	ENST00000263253	NM_001429.3	2107	cCc/cTc						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44929053	44929053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1305	207	512	0	ENST00000377967.4:c.2153G>A	p.Ser718Asn	p.S718N	ENST00000377967	NM_021140.2	718	aGc/aAc						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47044898	47044898	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			834	204	305	1	ENST00000329236.7:c.1990C>T	p.Gln664Ter	p.Q664*	ENST00000329236	NM_001204466.1	664	Cag/Tag						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63410019	63410019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			909	238	381	0	ENST00000330258.3:c.3148G>A	p.Asp1050Asn	p.D1050N	ENST00000330258	NM_152424.3	1050	Gat/Aat						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70356132	70356132	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1343	92	433	0	ENST00000374080.3:c.5027G>A	p.Gly1676Asp	p.G1676D	ENST00000374080		1676	gGt/gAt						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70357681	70357681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1389	89	454	0	ENST00000374080.3:c.5932C>T	p.Pro1978Ser	p.P1978S	ENST00000374080		1978	Cct/Tct						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76940464	76940464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1380	94	533	1	ENST00000373344.5:c.629G>A	p.Ser210Asn	p.S210N	ENST00000373344	NM_000489.3	210	aGc/aAc						NEWRECORD																																																																									
MCL1	4170	MSKCC	GRCh37	1	150551492	150551494	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			509	591	416	7	ENST00000369026.2:c.513_515delGGA	p.Glu171del	p.E171del	ENST00000369026	NM_021960.4	171	gaGGAc/gac						NEWRECORD																																																																									
IFNGR1	3459	MSKCC	GRCh37	6	137519505	137519506	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs780346130		P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			767	233	327	1	ENST00000367739.4:c.1132_1133del	p.Ser378PhefsTer6	p.S378Ffs*6	ENST00000367739	NM_000416.2	378	AGt/t						NEWRECORD																																																																									
CDKN1B	1027	MSKCC	GRCh37	12	12870952	12870975	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	GGAATTTCGATTTTCAGAATCACA	GGAATTTCGATTTTCAGAATCACA	-			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			929	435	274	0	ENST00000228872.4:c.179_202del	p.Trp60_Lys68delinsTer	p.W60_K68delins*	ENST00000228872	NM_004064.3	60	tGGAATTTCGATTTTCAGAATCACAaa/taa						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3823845	3823863	+	frameshift_variant	Frame_Shift_Del	DEL	CTGAGCGGGCGCCTGGGCC	CTGAGCGGGCGCCTGGGCC	-			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			405	590	294	1	ENST00000262367.5:c.2352_2370del	p.Met784IlefsTer17	p.M784Ifs*17	ENST00000262367	NM_004380.2	784	atGGCCCAGGCGCCCGCTCAG/at						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			441	31	143	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0008334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	59	248	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	513	384	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120459277	120459277	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	47	240	0	ENST00000256646.2:c.6068A>G	p.Tyr2023Cys	p.Y2023C	ENST00000256646	NM_024408.3	2023	tAt/tGt						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	11984739	11984739	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	59	232	0	ENST00000353533.5:c.285G>A	p.Trp95Ter	p.W95*	ENST00000353533	NM_003010.3	95	tgG/tgA						NEWRECORD																																																																									
STAT5A	6776	MSKCC	GRCh37	17	40453380	40453380	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1286	256	1049	3	ENST00000345506.4:c.1077G>T	p.Lys359Asn	p.K359N	ENST00000345506	NM_003152.3	359	aaG/aaT						NEWRECORD																																																																									
ERG	2078	MSKCC	GRCh37	21	39755515	39755515	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	143	531	0	ENST00000288319.7:c.1250A>T	p.Tyr417Phe	p.Y417F	ENST00000288319	NM_182918.3	417	tAc/tTc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0006964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	543	588	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579386	7579386	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0006964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	283	678	0	ENST00000269305.4:c.301A>T	p.Lys101Ter	p.K101*	ENST00000269305	NM_001126112.2	101	Aaa/Taa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0005174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	70	305	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36206706	36206706	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0005174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	52	199	0	ENST00000300305.3:c.805+1G>A		p.X269_splice	ENST00000300305		269							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916918	178916920	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0005174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	233	842	1	ENST00000263967.3:c.305_307del	p.Ile102_Glu103delinsLys	p.I102_E103delinsK	ENST00000263967	NM_006218.2	102	aTTGaa/aaa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0009063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	38	330	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0009063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	35	519	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56438296	56438296	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	92	283	0	ENST00000407977.2:c.697C>T	p.Gln233Ter	p.Q233*	ENST00000407977		233	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	468	346	1	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175536	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	358	446	0	ENST00000257430.4:c.4245del	p.Ser1415ArgfsTer4	p.S1415Rfs*4	ENST00000257430	NM_000038.5	1415	agT/ag						NEWRECORD																																																																									
RAD54L	8438	MSKCC	GRCh37	1	46714199	46714199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	105	484	1	ENST00000371975.4:c.19C>T	p.Pro7Ser	p.P7S	ENST00000371975	NM_003579.3	7	Ccc/Tcc						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52668619	52668619	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0005124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	415	604	1	ENST00000394830.3:c.1300C>T	p.Arg434Ter	p.R434*	ENST00000394830	NM_018313.4	434	Cga/Tga						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30671882	30671882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	192	642	0	ENST00000376406.3:c.5078C>T	p.Pro1693Leu	p.P1693L	ENST00000376406	NM_014641.2	1693	cCg/cTg						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117622269	117622269	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	110	572	0	ENST00000368508.3:c.6601G>T	p.Glu2201Ter	p.E2201*	ENST00000368508	NM_002944.2	2201	Gaa/Taa						NEWRECORD																																																																									
SRC	6714	MSKCC	GRCh37	20	36012561	36012561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1452	149	498	0	ENST00000358208.4:c.5G>A	p.Gly2Asp	p.G2D	ENST00000358208		2	gGt/gAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	82	471	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	18	295	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
RFWD2	64326	MSKCC	GRCh37	1	176015329	176015329	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	37	458	0	ENST00000367669.3:c.1409A>T	p.Asn470Ile	p.N470I	ENST00000367669	NM_022457.5	470	aAt/aTt						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25463206	25463206	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	59	690	0	ENST00000264709.3:c.2287G>T	p.Val763Phe	p.V763F	ENST00000264709	NM_175629.2	763	Gtt/Ttt						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25967042	25967042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	37	501	0	ENST00000435504.4:c.2164G>A	p.Glu722Lys	p.E722K	ENST00000435504		722	Gaa/Aaa						NEWRECORD																																																																									
FOXP1	27086	MSKCC	GRCh37	3	71026838	71026838	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	32	480	0	ENST00000318789.4:c.1384G>T	p.Ala462Ser	p.A462S	ENST00000318789	NM_032682.5	462	Gca/Tca						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185146703	185146703	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	92	617	1	ENST00000265026.3:c.334G>T	p.Gly112Ter	p.G112*	ENST00000265026	NM_004721.4	112	Gga/Tga						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41730025	41730025	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	68	996	0	ENST00000242208.4:c.504G>T	p.Arg168Ser	p.R168S	ENST00000242208	NM_002192.2	168	agG/agT						NEWRECORD																																																																									
BIRC3	330	MSKCC	GRCh37	11	102201921	102201921	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	57	1034	0	ENST00000263464.3:c.1273G>C	p.Asp425His	p.D425H	ENST00000263464	NM_001165.4	425	Gat/Cat						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95578517	95578517	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	39	433	0	ENST00000343455.3:c.2108A>T	p.His703Leu	p.H703L	ENST00000343455	NM_177438.2	703	cAc/cTc						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68835584	68835584	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	17	500	0	ENST00000261769.5:c.175G>C	p.Asp59His	p.D59H	ENST00000261769	NM_004360.3	59	Gat/Cat						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70119827	70119827	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	87	677	0	ENST00000245479.2:c.829G>T	p.Glu277Ter	p.E277*	ENST00000245479	NM_000346.3	277	Gag/Tag						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70120253	70120253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1179	182	783	1	ENST00000245479.2:c.1255G>T	p.Ala419Ser	p.A419S	ENST00000245479	NM_000346.3	419	Gcc/Tcc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604787	48604787	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	20	538	0	ENST00000342988.3:c.1609G>C	p.Asp537His	p.D537H	ENST00000342988	NM_005359.5	537	Gac/Cac						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602381	10602381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	105	750	1	ENST00000171111.5:c.1197G>A	p.Met399Ile	p.M399I	ENST00000171111	NM_203500.1	399	atG/atA						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39931753	39931753	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	59	793	0	ENST00000378444.4:c.2846C>A	p.Ser949Ter	p.S949*	ENST00000378444	NM_001123385.1	949	tCa/tAa						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39933638	39933638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	86	707	0	ENST00000378444.4:c.961G>T	p.Val321Phe	p.V321F	ENST00000378444	NM_001123385.1	321	Gtc/Ttc						NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100629546	100629546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	51	800	0	ENST00000308731.7:c.218C>T	p.Pro73Leu	p.P73L	ENST00000308731	NM_000061.2	73	cCt/cTt						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89391034	89391035	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0005827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	43	679	0	ENST00000336596.2:c.1100_1101delinsAT	p.Gly367Asp	p.G367D	ENST00000336596	NM_005233.5	367	gGG/gAT						NEWRECORD																																																																									
ICOSLG	23308	MSKCC	GRCh37	21	45649972	45649973	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0005827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	28	354	2	ENST00000407780.3:c.863-1_863delinsTT		p.X288_splice	ENST00000407780	NM_001283052.1	288							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	12	387	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	149	511	0	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0004781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	50	307	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175593	112175611	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAAGTAAAACACCTCCA	CAGAAGTAAAACACCTCCA	-			P-0004781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	106	418	0	ENST00000257430.4:c.4303_4321del	p.Arg1435HisfsTer32	p.R1435Hfs*32	ENST00000257430	NM_000038.5	1434	agCAGAAGTAAAACACCTCCA/ag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579483	7579484	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0004781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	115	276	0	ENST00000269305.4:c.203_204del	p.Glu68GlyfsTer80	p.E68Gfs*80	ENST00000269305	NM_001126112.2	68	gAG/g						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	304	417	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30732981	30732981	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	252	293	0	ENST00000359013.4:c.1669C>T	p.Gln557Ter	p.Q557*	ENST00000359013	NM_001024847.2	557	Cag/Tag						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55372361	55372361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	127	306	1	ENST00000297316.4:c.1051C>T	p.Pro351Ser	p.P351S	ENST00000297316	NM_022454.3	351	Ccc/Tcc						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115112224	115112224	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	87	239	1	ENST00000257566.3:c.1516G>T	p.Gly506Cys	p.G506C	ENST00000257566	NM_016569.3	506	Ggc/Tgc						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21557478	21557478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	397	542	0	ENST00000382592.4:c.2367C>A	p.His789Gln	p.H789Q	ENST00000382592	NM_014572.2	789	caC/caA						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28895670	28895670	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1302	199	474	0	ENST00000282397.4:c.3104T>A	p.Val1035Glu	p.V1035E	ENST00000282397	NM_002019.4	1035	gTg/gAg						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10597390	10597390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	764	424	0	ENST00000171111.5:c.1813G>C	p.Gly605Arg	p.G605R	ENST00000171111	NM_203500.1	605	Ggc/Cgc						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47041583	47041584	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	T			P-0008851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	156	261	0	ENST00000329236.7:c.1574_1575delinsT	p.Gln525LeufsTer101	p.Q525Lfs*101	ENST00000329236	NM_001204466.1	525	cAG/cT						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	147	322	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	74	273	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	90	212	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc						NEWRECORD																																																																									
NEGR1	257194	MSKCC	GRCh37	1	72076758	72076758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1274	159	540	0	ENST00000357731.5:c.739G>A	p.Gly247Ser	p.G247S	ENST00000357731	NM_173808.2	247	Ggt/Agt						NEWRECORD																																																																									
CDC73	79577	MSKCC	GRCh37	1	193218998	193218998	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	129	264	0	ENST00000367435.3:c.1556A>T	p.Asp519Val	p.D519V	ENST00000367435	NM_024529.4	519	gAc/gTc						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243800963	243800963	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1245	189	430	1	ENST00000263826.5:c.511G>T	p.Gly171Ter	p.G171*	ENST00000263826	NM_005465.4	171	Gga/Tga						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89176380	89176380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	55	312	0	ENST00000336596.2:c.110C>T	p.Thr37Ile	p.T37I	ENST00000336596	NM_005233.5	37	aCa/aTa						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81339554	81339554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1231	135	402	0	ENST00000222390.5:c.1450G>T	p.Val484Leu	p.V484L	ENST00000222390	NM_000601.4	484	Gta/Tta						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98242310	98242310	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	67	313	0	ENST00000331920.6:c.1008C>A	p.His336Gln	p.H336Q	ENST00000331920	NM_000264.3	336	caC/caA						NEWRECORD																																																																									
RPS6KA4	8986	MSKCC	GRCh37	11	64132861	64132861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	327	438	1	ENST00000334205.4:c.995C>T	p.Ala332Val	p.A332V	ENST00000334205	NM_003942.2	332	gCg/gTg						NEWRECORD																																																																									
RPS6KA4	8986	MSKCC	GRCh37	11	64137809	64137809	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	284	437	0	ENST00000334205.4:c.1910G>T	p.Gly637Val	p.G637V	ENST00000334205	NM_003942.2	637	gGg/gTg						NEWRECORD																																																																									
CCND1	595	MSKCC	GRCh37	11	69457998	69457998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	224	258	0	ENST00000227507.2:c.398G>T	p.Arg133Leu	p.R133L	ENST00000227507	NM_053056.2	133	cGg/cTg						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29657373	29657373	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1229	144	368	0	ENST00000358273.4:c.5669G>T	p.Gly1890Val	p.G1890V	ENST00000358273	NM_001042492.2	1890	gGc/gTc						NEWRECORD																																																																									
TCF3	6929	MSKCC	GRCh37	19	1619428	1619428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			987	93	382	0	ENST00000344749.5:c.1213C>T	p.Arg405Cys	p.R405C	ENST00000344749	NM_001136139.2	405	Cgc/Tgc						NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45007800	45007801	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	70	261	0	ENST00000558401.1:c.248_249del	p.Tyr83SerfsTer6	p.Y83Sfs*6	ENST00000558401	NM_004048.2	83	TAt/t						NEWRECORD																																																																									
NBN	4683	MSKCC	GRCh37	8	90993615	90993615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	51	268	0	ENST00000265433.3:c.308G>T	p.Gly103Val	p.G103V	ENST00000265433	NM_002485.4	103	gGa/gTa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0008913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	230	353	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0008913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	703	529	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180048812	180048812	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	195	436	0	ENST00000261937.6:c.1750A>G	p.Lys584Glu	p.K584E	ENST00000261937	NM_182925.4	584	Aag/Gag						NEWRECORD																																																																									
TNFAIP3	7128	MSKCC	GRCh37	6	138200338	138200338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	59	210	0	ENST00000237289.4:c.1756G>A	p.Ala586Thr	p.A586T	ENST00000237289	NM_001270507.1	586	Gcc/Acc						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59876601	59876601	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	73	317	1	ENST00000259008.2:c.1200C>A	p.Asp400Glu	p.D400E	ENST00000259008	NM_032043.2	400	gaC/gaA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	103	233	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	130	340	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa						NEWRECORD																																																																									
RAD51C	5889	MSKCC	GRCh37	17	56770023	56770023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	40	315	1	ENST00000337432.4:c.19C>T	p.Arg7Cys	p.R7C	ENST00000337432	NM_058216.2	7	Cgc/Tgc						NEWRECORD																																																																									
ARAF	369	MSKCC	GRCh37	X	47422655	47422655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	111	279	1	ENST00000377045.4:c.127G>A	p.Asp43Asn	p.D43N	ENST00000377045	NM_001654.4	43	Gac/Aac						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120458018	120458018	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	58	248	0	ENST00000256646.2:c.7327C>A	p.Pro2443Thr	p.P2443T	ENST00000256646	NM_024408.3	2443	Cct/Act						NEWRECORD																																																																									
BIRC3	330	MSKCC	GRCh37	11	102206697	102206697	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0008042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1047	95	414	0	ENST00000263464.3:c.1325A>T	p.Asn442Ile	p.N442I	ENST00000263464	NM_001165.4	442	aAt/aTt						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95566230	95566230	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	108	323	0	ENST00000343455.3:c.4093C>G	p.Leu1365Val	p.L1365V	ENST00000343455	NM_177438.2	1365	Cta/Gta						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0004856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	107	381	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0004856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	140	370	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577507	7577507	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	140	380	1	ENST00000269305.4:c.774A>T	p.Glu258Asp	p.E258D	ENST00000269305	NM_001126112.2	258	gaA/gaT						NEWRECORD																																																																									
PRDM1	639	MSKCC	GRCh37	6	106553588	106553588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	84	303	0	ENST00000369096.4:c.1553C>T	p.Thr518Met	p.T518M	ENST00000369096	NM_001198.3	518	aCg/aTg						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974778	21974786	+	inframe_deletion	In_Frame_Del	DEL	CCAGCCAGT	CCAGCCAGT	-			P-0004856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	51	175	0	ENST00000304494.5:c.41_49del	p.Asp14_Leu16del	p.D14_L16del	ENST00000304494	NM_000077.4	14	gACTGGCTGGcc/gcc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	76	350	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32166769	32166769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	35	304	0	ENST00000375023.3:c.4469G>A	p.Arg1490Gln	p.R1490Q	ENST00000375023	NM_004557.3	1490	cGg/cAg						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139417614	139417634	+	inframe_deletion	In_Frame_Del	DEL	ACGGGTCAGCCTGCTGGCACG	ACGGGTCAGCCTGCTGGCACG	-			P-0007861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	34	311	0	ENST00000277541.6:c.410_430del	p.Ser137_Pro143del	p.S137_P143del	ENST00000277541	NM_017617.3	137	tCGTGCCAGCAGGCTGACCCGTgc/tgc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	115	394	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0008154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	76	359	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32168694	32168694	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	66	544	0	ENST00000375023.3:c.4229G>T	p.Arg1410Leu	p.R1410L	ENST00000375023	NM_004557.3	1410	cGc/cTc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	41	1271	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103520589	103520589	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	23	1311	0	ENST00000355739.4:c.2660A>G	p.Glu887Gly	p.E887G	ENST00000355739	NM_000123.3	887	gAa/gGa						NEWRECORD																																																																									
MAP2K1	5604	MSKCC	GRCh37	15	66774134	66774134	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	21	1664	2	ENST00000307102.5:c.610A>T	p.Ile204Phe	p.I204F	ENST00000307102	NM_002755.3	204	Atc/Ttc						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3779870	3779870	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	22	1463	3	ENST00000262367.5:c.5178C>A	p.Tyr1726Ter	p.Y1726*	ENST00000262367	NM_004380.2	1726	taC/taA						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47044898	47044898	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	22	907	0	ENST00000329236.7:c.1990C>T	p.Gln664Ter	p.Q664*	ENST00000329236	NM_001204466.1	664	Cag/Tag						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86674356	86674356	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0009312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	73	145	1	ENST00000274376.6:c.2487+1G>A		p.X829_splice	ENST00000274376	NM_002890.2	829							NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112137081	112137081	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0009312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	136	225	0	ENST00000257430.4:c.834+1G>C		p.X278_splice	ENST00000257430	NM_000038.5	278							NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46287479	46287479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	214	376	0	ENST00000334344.6:c.5338G>C	p.Gly1780Arg	p.G1780R	ENST00000334344	NM_152641.2	1780	Ggt/Cgt						NEWRECORD																																																																									
MAX	4149	MSKCC	GRCh37	14	65560509	65560509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	246	411	0	ENST00000358664.4:c.88G>C	p.Ala30Pro	p.A30P	ENST00000358664	NM_002382.4	30	Gca/Cca						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21968185	21968235	+	coding_sequence_variant,3_prime_UTR_variant	In_Frame_Del	DEL	TGATCTAAGTTTCCCGAGGTTTCTCAGAGCCTCTCTGGTTCTTTCAATCGG	TGATCTAAGTTTCCCGAGGTTTCTCAGAGCCTCTCTGGTTCTTTCAATCGG	-			P-0009312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	170	43	0	ENST00000304494.5:c.464_*43delCCGATTGAAAGAACCAGAGAGGCTCTGAGAAACCTCGGGAAACTTAGATCA		p.*155*	ENST00000304494	NM_000077.4	155							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578465	7578470	+	inframe_deletion	In_Frame_Del	DEL	GGTGCC	GGTGCC	-			P-0009312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	314	311	0	ENST00000269305.4:c.460_465del	p.Gly154_Thr155del	p.G154_T155del	ENST00000269305	NM_001126112.2	154	GGCACC/-						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70339230	70339230	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	88	395	0	ENST00000374080.3:c.107T>G	p.Leu36Arg	p.L36R	ENST00000374080		36	cTg/cGg						NEWRECORD																																																																									
RARA	5914	MSKCC	GRCh37	17	38510609	38510609	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	93	302	0	ENST00000254066.5:c.863A>G	p.Asp288Gly	p.D288G	ENST00000254066	NM_000964.3	288	gAc/gGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0005460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	194	683	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0005460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	160	697	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	86	475	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70333143	70333143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	113	662	2	ENST00000373644.4:c.1048G>A	p.Glu350Lys	p.E350K	ENST00000373644	NM_030625.2	350	Gaa/Aaa						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11130334	11130334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	112	741	1	ENST00000344626.4:c.2573C>T	p.Thr858Met	p.T858M	ENST00000344626	NM_003072.3	858	aCg/aTg						NEWRECORD																																																																									
HIST1H3I	8354	MSKCC	GRCh37	6	27840069	27840069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1225	215	1173	2	ENST00000328488.2:c.25C>T	p.Arg9Cys	p.R9C	ENST00000328488	NM_003533.2	9	Cgc/Tgc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	78	301	1	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag						NEWRECORD																																																																									
FGFR2	2263	MSKCC	GRCh37	10	123325170	123325170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	79	326	0	ENST00000358487.5:c.158C>T	p.Ala53Val	p.A53V	ENST00000358487	NM_000141.4	53	gCg/gTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0007070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	229	495	2	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224							NEWRECORD																																																																									
ERCC2	2068	MSKCC	GRCh37	19	45867303	45867303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	150	209	0	ENST00000391945.4:c.890C>T	p.Ala297Val	p.A297V	ENST00000391945	NM_000400.3	297	gCc/gTc						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0009937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	130	477	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47041401	47041401	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	154	578	0	ENST00000329236.7:c.1511A>G	p.Tyr504Cys	p.Y504C	ENST00000329236	NM_001204466.1	504	tAt/tGt						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47006891	47006891	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	80	401	0	ENST00000329236.7:c.13del	p.Arg5AspfsTer80	p.R5Dfs*80	ENST00000329236	NM_001204466.1	4	gAa/ga						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115830	8115837	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGGCCG	CCCGGCCG	-			P-0005691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	130	758	0	ENST00000346208.3:c.1179_1186delGGCCGCCC	p.Ala394LeufsTer110	p.A394Lfs*110	ENST00000346208		392	aaCCCGGCCGcc/aacc						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55129857	55129857	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	51	519	0	ENST00000257290.5:c.391C>A	p.Leu131Ile	p.L131I	ENST00000257290	NM_006206.4	131	Cta/Ata						NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100611108	100611108	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	86	788	2	ENST00000308731.7:c.1498G>T	p.Glu500Ter	p.E500*	ENST00000308731	NM_000061.2	500	Gag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	340	321	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21970971	21970971	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	179	460	0	ENST00000304494.5:c.387C>A	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taC/taA						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	55	418	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0007497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	98	411	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261							NEWRECORD																																																																									
CDKN1A	1026	MSKCC	GRCh37	6	36651960	36651960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	51	262	0	ENST00000244741.5:c.82G>A	p.Glu28Lys	p.E28K	ENST00000244741	NM_000389.4	28	Gag/Aag						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32913468	32913468	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	360	739	0	ENST00000380152.3:c.4976C>G	p.Ser1659Cys	p.S1659C	ENST00000380152		1659	tCc/tGc						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32915261	32915261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	323	713	0	ENST00000380152.3:c.6769C>T	p.Pro2257Ser	p.P2257S	ENST00000380152		2257	Ccc/Tcc						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	343540	343540	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	37	474	0	ENST00000262320.3:c.2134C>T	p.Arg712Ter	p.R712*	ENST00000262320	NM_003502.3	712	Cga/Tga						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68867370	68867370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	22	389	0	ENST00000261769.5:c.2617G>A	p.Ala873Thr	p.A873T	ENST00000261769	NM_004360.3	873	Gct/Act						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29490259	29490259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	64	495	0	ENST00000358273.4:c.344C>T	p.Pro115Leu	p.P115L	ENST00000358273	NM_001042492.2	115	cCa/cTa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	142	419	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21970969	21970969	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	100	343	0	ENST00000304494.5:c.389T>A	p.Leu130Gln	p.L130Q	ENST00000304494	NM_000077.4	130	cTg/cAg						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157519968	157519968	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	140	401	0	ENST00000346085.5:c.4037A>G	p.Tyr1346Cys	p.Y1346C	ENST00000346085	NM_020732.3	1346	tAt/tGt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591917	48591931	+	inframe_deletion	In_Frame_Del	DEL	TCGCTTTTGTTTGGG	TCGCTTTTGTTTGGG	-			P-0009047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	98	480	0	ENST00000342988.3:c.1082_1096del	p.Arg361_Gly365del	p.R361_G365del	ENST00000342988	NM_005359.5	360	gaTCGCTTTTGTTTGGGt/gat						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578482	7578482	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	106	370	0	ENST00000269305.4:c.448del	p.Thr150HisfsTer20	p.T150Hfs*20	ENST00000269305	NM_001126112.2	150	Aca/ca						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610581	10610583	+	frameshift_variant	Frame_Shift_Del	DEL	CGT	CGT	A			P-0007665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	11	457	0	ENST00000171111.5:c.127_129delinsT	p.Thr43SerfsTer35	p.T43Sfs*35	ENST00000171111	NM_203500.1	43	ACG/T						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	94	380	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0006821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	82	440	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	171	513	1	ENST00000269305.4:c.764T>A	p.Ile255Asn	p.I255N	ENST00000269305	NM_001126112.2	255	aTc/aAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0006821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	86	292	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116436039	116436039	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	283	547	2	ENST00000397752.3:c.4034T>C	p.Ile1345Thr	p.I1345T	ENST00000397752	NM_000245.2	1345	aTt/aCt						NEWRECORD																																																																									
AURKA	6790	MSKCC	GRCh37	20	54961502	54961502	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	53	370	0	ENST00000312783.6:c.130G>T	p.Ala44Ser	p.A44S	ENST00000312783	NM_198436.1	44	Gct/Tct						NEWRECORD																																																																									
DAXX	1616	MSKCC	GRCh37	6	33287893	33287893	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			46	90	547	0	ENST00000374542.5:c.1360G>T	p.Glu454Ter	p.E454*	ENST00000374542	NM_001141970.1	454	Gaa/Taa						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128850861	128850861	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	30	504	1	ENST00000249373.3:c.1708G>T	p.Ala570Ser	p.A570S	ENST00000249373	NM_005631.4	570	Gcc/Tcc						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64574692	64574692	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0009153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			37	67	401	0	ENST00000337652.1:c.799-1G>T		p.X267_splice	ENST00000337652	NM_130803.2	267							NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061592	38061592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	15	129	1	ENST00000250448.2:c.397G>A	p.Ala133Thr	p.A133T	ENST00000250448	NM_004496.3	133	Gcc/Acc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	144	292	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32953587	32953587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1147	94	413	0	ENST00000380152.3:c.8888C>T	p.Ser2963Leu	p.S2963L	ENST00000380152		2963	tCa/tTa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	43	290	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180057002	180057002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	67	475	1	ENST00000261937.6:c.617G>A	p.Cys206Tyr	p.C206Y	ENST00000261937	NM_182925.4	206	tGc/tAc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8340378	8340378	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	67	420	0	ENST00000356435.5:c.5218G>T	p.Val1740Phe	p.V1740F	ENST00000356435		1740	Gtt/Ttt						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8111447	8111447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	75	375	1	ENST00000346208.3:c.933G>T	p.Arg311Ser	p.R311S	ENST00000346208		311	agG/agT						NEWRECORD																																																																									
TCF3	6929	MSKCC	GRCh37	19	1619416	1619416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	89	441	1	ENST00000344749.5:c.1225G>T	p.Val409Leu	p.V409L	ENST00000344749	NM_001136139.2	409	Gtg/Ttg						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66863233	66863233	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	56	461	0	ENST00000374690.3:c.1752C>A	p.Phe584Leu	p.F584L	ENST00000374690	NM_000044.3	584	ttC/ttA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	324	349	0	ENST00000269305.4:c.808T>C	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	Ttt/Ctt						NEWRECORD																																																																									
MLH1	4292	MSKCC	GRCh37	3	37092022	37092022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	66	340	0	ENST00000231790.2:c.2149G>A	p.Glu717Lys	p.E717K	ENST00000231790	NM_000249.3	717	Gaa/Aaa						NEWRECORD																																																																									
ERCC3	2071	MSKCC	GRCh37	2	128046347	128046347	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	141	306	0	ENST00000285398.2:c.916A>G	p.Ile306Val	p.I306V	ENST00000285398	NM_000122.1	306	Atc/Gtc						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212252715	212252715	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0005419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	27	174	0	ENST00000342788.4:c.3138T>A	p.Ser1046Arg	p.S1046R	ENST00000342788	NM_005235.2	1046	agT/agA						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212530154	212530154	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	27	255	0	ENST00000342788.4:c.1765T>A	p.Cys589Ser	p.C589S	ENST00000342788	NM_005235.2	589	Tgt/Agt						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215674233	215674233	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	31	249	0	ENST00000260947.4:c.61C>G	p.Arg21Gly	p.R21G	ENST00000260947	NM_000465.2	21	Cgt/Ggt						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30715597	30715597	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	156	242	0	ENST00000359013.4:c.1330G>A	p.Val444Met	p.V444M	ENST00000359013	NM_001024847.2	444	Gtg/Atg						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142212018	142212018	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	29	285	0	ENST00000350721.4:c.6034G>C	p.Glu2012Gln	p.E2012Q	ENST00000350721	NM_001184.3	2012	Gaa/Caa						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55595547	55595547	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	54	297	0	ENST00000288135.5:c.2037G>C	p.Leu679Phe	p.L679F	ENST00000288135	NM_000222.2	679	ttG/ttC						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55984794	55984794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	23	295	0	ENST00000263923.4:c.335C>T	p.Ser112Leu	p.S112L	ENST00000263923	NM_002253.2	112	tCg/tTg						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86628371	86628371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	51	192	0	ENST00000274376.6:c.740C>A	p.Ser247Tyr	p.S247Y	ENST00000274376	NM_002890.2	247	tCt/tAt						NEWRECORD																																																																									
HIST1H3E	8353	MSKCC	GRCh37	6	26225585	26225585	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1372	507	642	0	ENST00000360408.1:c.203T>A	p.Phe68Tyr	p.F68Y	ENST00000360408	NM_003532.2	68	tTt/tAt						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145741499	145741499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	70	226	1	ENST00000428558.2:c.1004G>A	p.Gly335Asp	p.G335D	ENST00000428558	NM_004260.3	335	gGc/gAc						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18435563	18435563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	20	232	0	ENST00000266497.5:c.548C>T	p.Ser183Leu	p.S183L	ENST00000266497		183	tCa/tTa						NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103519189	103519189	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	22	156	0	ENST00000355739.4:c.2527C>G	p.Gln843Glu	p.Q843E	ENST00000355739	NM_000123.3	843	Caa/Gaa						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2104379	2104379	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	25	266	0	ENST00000219476.3:c.419T>A	p.Leu140Gln	p.L140Q	ENST00000219476	NM_000548.3	140	cTg/cAg						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72822034	72822034	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149197237		P-0005419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	19	249	0	ENST00000268489.5:c.10141C>T	p.Arg3381Trp	p.R3381W	ENST00000268489	NM_006885.3	3381	Cgg/Tgg						NEWRECORD																																																																									
GATA1	2623	MSKCC	GRCh37	X	48652533	48652533	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	20	136	0	ENST00000376670.3:c.1204A>T	p.Thr402Ser	p.T402S	ENST00000376670	NM_002049.3	402	Acc/Tcc						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56487579	56487581	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0005419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	273	270	0	ENST00000267101.3:c.1515_1517del	p.Ser506del	p.S506del	ENST00000267101	NM_001982.3	504	tgCTCc/tgc						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25462032	25462032	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	98	310	0	ENST00000264709.3:c.2375del	p.Arg792ProfsTer10	p.R792Pfs*10	ENST00000264709	NM_175629.2	792	cGc/cc						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29509597	29509614	+	inframe_deletion	In_Frame_Del	DEL	CCACTACAAATCATTCTC	CCACTACAAATCATTCTC	-			P-0005419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	163	284	0	ENST00000358273.4:c.803_820del	p.Pro268_Leu273del	p.P268_L273del	ENST00000358273	NM_001042492.2	268	CCACTACAAATCATTCTC/-						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67589149	67589151	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0005419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	313	154	0	ENST00000274335.5:c.1138_1140delTTA	p.Leu380del	p.L380del	ENST00000274335		379	aaATTa/aaa						NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0007774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	293	365	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	193	233	0	ENST00000269305.4:c.542G>C	p.Arg181Pro	p.R181P	ENST00000269305	NM_001126112.2	181	cGc/cCc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	67	151	0	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174814	112174814	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	159	386	0	ENST00000257430.4:c.3523C>T	p.Gln1175Ter	p.Q1175*	ENST00000257430	NM_000038.5	1175	Cag/Tag						NEWRECORD																																																																									
MST1R	4486	MSKCC	GRCh37	3	49936349	49936349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	540	655	2	ENST00000296474.3:c.1499G>A	p.Arg500Gln	p.R500Q	ENST00000296474	NM_002447.2	500	cGg/cAg						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42003272	42003272	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	402	705	0	ENST00000219905.7:c.2809A>T	p.Lys937Ter	p.K937*	ENST00000219905	NM_001164273.1	937	Aag/Tag						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31388036	31388036	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2110	227	473	0	ENST00000328111.2:c.1837G>T	p.Val613Phe	p.V613F	ENST00000328111	NM_006892.3	613	Gtt/Ttt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	GA			P-0007774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	154	344	0	ENST00000256078.4:c.34_35delinsTC	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	GGt/TCt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	65	271	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0007026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	446	214	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
PDCD1	5133	MSKCC	GRCh37	2	242795067	242795067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1096	152	346	0	ENST00000334409.5:c.142G>A	p.Asp48Asn	p.D48N	ENST00000334409	NM_005018.2	48	Gac/Aac						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52668799	52668799	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	47	244	0	ENST00000394830.3:c.1120G>C	p.Glu374Gln	p.E374Q	ENST00000394830	NM_018313.4	374	Gaa/Caa						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11141523	11141523	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	64	331	0	ENST00000344626.4:c.3500C>G	p.Ser1167Trp	p.S1167W	ENST00000344626	NM_003072.3	1167	tCg/tGg						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47035972	47035972	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1171	130	439	0	ENST00000329236.7:c.419G>A	p.Trp140Ter	p.W140*	ENST00000329236	NM_001204466.1	140	tGg/tAg						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55564516	55564516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	182	297	1	ENST00000288135.5:c.404G>A	p.Arg135His	p.R135H	ENST00000288135	NM_000222.2	135	cGc/cAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0007132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	253	278	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187							NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16261103	16261103	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	103	241	0	ENST00000375759.3:c.8368A>T	p.Met2790Leu	p.M2790L	ENST00000375759	NM_015001.2	2790	Atg/Ttg						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212295789	212295789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	351	397	0	ENST00000342788.4:c.2524C>T	p.Arg842Trp	p.R842W	ENST00000342788	NM_005235.2	842	Cgg/Tgg						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52437585	52437585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	537	649	0	ENST00000460680.1:c.1576C>T	p.His526Tyr	p.H526Y	ENST00000460680	NM_004656.3	526	Cac/Tac						NEWRECORD																																																																									
ETV1	2115	MSKCC	GRCh37	7	13971324	13971324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1568	271	411	1	ENST00000405192.2:c.605C>T	p.Thr202Met	p.T202M	ENST00000405192	NM_001163147.1	202	aCg/aTg						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140476733	140476733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	182	409	0	ENST00000288602.6:c.1673G>A	p.Arg558Gln	p.R558Q	ENST00000288602	NM_004333.4	558	cGa/cAa						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8100271	8100271	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	304	293	0	ENST00000346208.3:c.245G>T	p.Ser82Ile	p.S82I	ENST00000346208		82	aGc/aTc						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52663030	52663032	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0007132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	207	271	0	ENST00000394830.3:c.1321_1323del	p.Glu441del	p.E441del	ENST00000394830	NM_018313.4	441	GAA/-						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164629	112164630	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0007132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	304	356	0	ENST00000257430.4:c.1706_1707del	p.Val569GlufsTer11	p.V569Efs*11	ENST00000257430	NM_000038.5	568	aGT/a						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175487	112175487	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	154	320	0	ENST00000257430.4:c.4196del	p.Arg1399LeufsTer16	p.R1399Lfs*16	ENST00000257430	NM_000038.5	1399	cGt/ct						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0006198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	331	500	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89499393	89499393	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	97	510	1	ENST00000336596.2:c.2563C>T	p.Gln855Ter	p.Q855*	ENST00000336596	NM_005233.5	855	Cag/Tag						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0006867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	19	304	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49420634	49420636	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0006867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	26	331	0	ENST00000301067.7:c.15113_15115del	p.Glu5038del	p.E5038del	ENST00000301067	NM_003482.3	5038	gAGGgt/ggt						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0005416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1107	401	319	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1625	429	283	2	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061465	38061465	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1197	452	347	0	ENST00000250448.2:c.524A>G	p.Tyr175Cys	p.Y175C	ENST00000250448	NM_004496.3	175	tAc/tGc						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59857716	59857716	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1576	536	447	0	ENST00000259008.2:c.1841C>A	p.Ser614Tyr	p.S614Y	ENST00000259008	NM_032043.2	614	tCt/tAt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0005059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	35	540	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0005059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	63	536	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0005059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	65	414	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174901	112174901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	102	495	0	ENST00000257430.4:c.3610C>T	p.Gln1204Ter	p.Q1204*	ENST00000257430	NM_000038.5	1204	Caa/Taa						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717751	89717751	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	57	244	0	ENST00000371953.3:c.776A>C	p.His259Pro	p.H259P	ENST00000371953	NM_000314.4	259	cAc/cCc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	131	338	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89259389	89259389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	172	489	0	ENST00000336596.2:c.533G>A	p.Gly178Glu	p.G178E	ENST00000336596	NM_005233.5	178	gGa/gAa						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11291050	11291050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	172	397	0	ENST00000361445.4:c.2711G>T	p.Gly904Val	p.G904V	ENST00000361445	NM_004958.3	904	gGc/gTc						NEWRECORD																																																																									
SH2B3	10019	MSKCC	GRCh37	12	111886062	111886062	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs183875955		P-0009462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	93	523	0	ENST00000341259.2:c.1684C>T	p.Arg562Trp	p.R562W	ENST00000341259	NM_005475.2	562	Cgg/Tgg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220706	1220706	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	154	308	0	ENST00000326873.7:c.727del	p.Val243SerfsTer44	p.V243Sfs*44	ENST00000326873	NM_000455.4	242	Ggg/gg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	139	381	0	ENST00000269305.4:c.380C>A	p.Ser127Tyr	p.S127Y	ENST00000269305	NM_001126112.2	127	tCc/tAc						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117650522	117650522	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	30	628	1	ENST00000368508.3:c.5336G>T	p.Cys1779Phe	p.C1779F	ENST00000368508	NM_002944.2	1779	tGt/tTt						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63850688	63850688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	152	455	2	ENST00000279873.7:c.1466C>T	p.Pro489Leu	p.P489L	ENST00000279873	NM_032199.2	489	cCa/cTa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0005974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	299	339	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa						NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519947		P-0005974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	193	477	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587777893		P-0005974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	126	357	0	ENST00000361445.4:c.5930C>A	p.Thr1977Lys	p.T1977K	ENST00000361445	NM_004958.3	1977	aCa/aAa						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49434990	49434990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	110	213	0	ENST00000301067.7:c.6563G>A	p.Arg2188His	p.R2188H	ENST00000301067	NM_003482.3	2188	cGc/cAc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	protein_altering_variant	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	CCT			P-0005974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	113	380	0	ENST00000275493.2:c.2236_2250delinsCCT	p.Glu746_Ala750delinsPro	p.E746_A750delinsP	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/CCT						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	29	541	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	368	531	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT						NEWRECORD																																																																									
MYCN	4613	MSKCC	GRCh37	2	16082389	16082389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	32	519	0	ENST00000281043.3:c.203C>G	p.Ala68Gly	p.A68G	ENST00000281043	NM_005378.4	68	gCg/gGg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49425256	49425256	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	185	571	0	ENST00000301067.7:c.13232C>G	p.Ser4411Cys	p.S4411C	ENST00000301067	NM_003482.3	4411	tCc/tGc						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89341311	89341311	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	28	202	0	ENST00000301030.4:c.7624G>T	p.Ala2542Ser	p.A2542S	ENST00000301030	NM_001256183.1	2542	Gcc/Tcc						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49419980	49420007	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTGAAGACCAGGTCCTCCAGGCCCTG	CAGTGAAGACCAGGTCCTCCAGGCCCTG	-			P-0005274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	209	507	0	ENST00000301067.7:c.15742_15769del	p.Gln5248ThrfsTer18	p.Q5248Tfs*18	ENST00000301067	NM_003482.3	5248	CAGGGCCTGGAGGACCTGGTCTTCACTGac/ac						NEWRECORD																																																																									
DNAJB1	3337	MSKCC	GRCh37	19	14627602	14627604	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0005274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	153	562	0	ENST00000254322.2:c.466_468del	p.Ala156del	p.A156del	ENST00000254322	NM_006145.1	156	GCC/-						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0006740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	194	479	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga						NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103524660	103524660	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	63	410	0	ENST00000355739.4:c.2791G>T	p.Ala931Ser	p.A931S	ENST00000355739	NM_000123.3	931	Gct/Tct						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1226540	1226540	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	102	427	0	ENST00000326873.7:c.1196A>C	p.Gln399Pro	p.Q399P	ENST00000326873	NM_000455.4	399	cAg/cCg						NEWRECORD																																																																									
SRC	6714	MSKCC	GRCh37	20	36012726	36012726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	244	110	0	ENST00000358208.4:c.170C>T	p.Ala57Val	p.A57V	ENST00000358208		57	gCg/gTg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	68	305	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0004803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	223	275	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0004803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	70	294	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48593505	48593505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	74	282	0	ENST00000342988.3:c.1256G>T	p.Gly419Val	p.G419V	ENST00000342988	NM_005359.5	419	gGg/gTg						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89445111	89445111	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0004803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	36	244	0	ENST00000336596.2:c.1431G>T	p.Lys477Asn	p.K477N	ENST00000336596	NM_005233.5	477	aaG/aaT						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66356149	66356149	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs142589245		P-0004803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	157	333	0	ENST00000273854.3:c.1348T>G	p.Leu450Val	p.L450V	ENST00000273854	NM_004439.5	450	Ttg/Gtg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40738998	40738998	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	269	276	1	ENST00000373198.4:c.3286G>T	p.Ala1096Ser	p.A1096S	ENST00000373198	NM_133170.3	1096	Gct/Tct						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175749	112175749	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	118	281	0	ENST00000257430.4:c.4458del	p.Asp1486GlufsTer21	p.D1486Efs*21	ENST00000257430	NM_000038.5	1486	gaT/ga						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007045-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	161	198	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256550	115256550	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007045-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	123	352	0	ENST00000369535.4:c.161A>G	p.Asp54Gly	p.D54G	ENST00000369535	NM_002524.4	54	gAc/gGc						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215593545	215593545	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007045-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	207	305	0	ENST00000260947.4:c.2189A>T	p.Gln730Leu	p.Q730L	ENST00000260947	NM_000465.2	730	cAg/cTg						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95577791	95577791	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0007045-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	220	481	1	ENST00000343455.3:c.2119G>T	p.Glu707Ter	p.E707*	ENST00000343455	NM_177438.2	707	Gaa/Taa						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29654569	29654569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007045-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1316	218	366	0	ENST00000358273.4:c.5321G>A	p.Gly1774Glu	p.G1774E	ENST00000358273	NM_001042492.2	1774	gGg/gAg						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37618489	37618489	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007045-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3118	1448	412	0	ENST00000447079.4:c.165G>C	p.Leu55Phe	p.L55F	ENST00000447079	NM_015083.1	55	ttG/ttC						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3817802	3817809	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTCACT	CTTTCACT	-			P-0007045-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1574	191	510	1	ENST00000262367.5:c.3162_3169del	p.Glu1054AspfsTer4	p.E1054Dfs*4	ENST00000262367	NM_004380.2	1054	gaAGTGAAAGta/gata						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579438	7579439	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0007045-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	424	391	0	ENST00000269305.4:c.248_249del	p.Ala83GlyfsTer65	p.A83Gfs*65	ENST00000269305	NM_001126112.2	83	gCG/g						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	418	393	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198265540	198265540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1181	95	518	1	ENST00000335508.6:c.2617G>A	p.Glu873Lys	p.E873K	ENST00000335508	NM_012433.2	873	Gag/Aag						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198299708	198299708	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	123	280	0	ENST00000335508.6:c.16A>G	p.Lys6Glu	p.K6E	ENST00000335508	NM_012433.2	6	Aag/Gag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	375	709	0	ENST00000263967.3:c.331A>C	p.Lys111Gln	p.K111Q	ENST00000263967	NM_006218.2	111	Aag/Cag						NEWRECORD																																																																									
HIST1H2BD	3017	MSKCC	GRCh37	6	26158437	26158437	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	265	358	0	ENST00000289316.2:c.40G>T	p.Gly14Cys	p.G14C	ENST00000289316	NM_138720.2	14	Ggc/Tgc						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2954919	2954919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	65	438	0	ENST00000396946.4:c.2791G>T	p.Ala931Ser	p.A931S	ENST00000396946	NM_032415.4	931	Gcc/Tcc						NEWRECORD																																																																									
CDK6	1021	MSKCC	GRCh37	7	92244573	92244573	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	236	268	0	ENST00000265734.4:c.862A>G	p.Arg288Gly	p.R288G	ENST00000265734	NM_001259.6	288	Aga/Gga						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508034	106508034	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	58	201	0	ENST00000359195.3:c.28G>T	p.Val10Leu	p.V10L	ENST00000359195	NM_002649.2	10	Gtg/Ttg						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106509955	106509955	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	130	393	1	ENST00000359195.3:c.1949G>T	p.Ser650Ile	p.S650I	ENST00000359195	NM_002649.2	650	aGc/aTc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8340384	8340384	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	158	428	0	ENST00000356435.5:c.5212A>T	p.Thr1738Ser	p.T1738S	ENST00000356435		1738	Acc/Tcc						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115109998	115109998	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	66	261	0	ENST00000257566.3:c.1880C>G	p.Pro627Arg	p.P627R	ENST00000257566	NM_016569.3	627	cCc/cGc						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7166270	7166270	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	250	484	0	ENST00000302850.5:c.1756T>G	p.Trp586Gly	p.W586G	ENST00000302850	NM_000208.2	586	Tgg/Ggg						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11144003	11144003	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	45	338	0	ENST00000344626.4:c.3584A>T	p.Gln1195Leu	p.Q1195L	ENST00000344626	NM_003072.3	1195	cAg/cTg						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47045872	47045872	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	203	217	0	ENST00000329236.7:c.2434-1G>C		p.X812_splice	ENST00000329236	NM_001204466.1	812							NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32972540	32972544	+	frameshift_variant	Frame_Shift_Del	DEL	CATTT	CATTT	-			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	161	432	0	ENST00000380152.3:c.9892_9896del	p.Phe3298AlafsTer27	p.F3298Afs*27	ENST00000380152		3297	gCATTT/g						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	94120284	94120284	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	441	747	1	ENST00000369303.4:c.767G>T	p.Trp256Leu	p.W256L	ENST00000369303	NM_004440.3	256	tGg/tTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55221776	55221776	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1462	151	678	0	ENST00000275493.2:c.820A>G	p.Thr274Ala	p.T274A	ENST00000275493	NM_005228.3	274	Acg/Gcg						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139413065	139413066	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0009856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	140	493	0	ENST00000277541.6:c.1076_1077delinsTT	p.Cys359Phe	p.C359F	ENST00000277541	NM_017617.3	359	tGC/tTT						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0009856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	164	473	1	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	412	452	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
HNF1A	6927	MSKCC	GRCh37	12	121435425	121435425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	123	459	1	ENST00000257555.6:c.1458G>T	p.Gln486His	p.Q486H	ENST00000257555		486	caG/caT						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9858337	9858337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	90	354	0	ENST00000330684.3:c.3064C>T	p.Arg1022Cys	p.R1022C	ENST00000330684	NM_001134407.1	1022	Cgc/Tgc						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39584352	39584352	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	201	420	0	ENST00000262039.4:c.1017G>T	p.Trp339Cys	p.W339C	ENST00000262039	NM_002647.2	339	tgG/tgT						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610427	10610427	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	534	489	0	ENST00000171111.5:c.283del	p.Ala95ProfsTer62	p.A95Pfs*62	ENST00000171111	NM_203500.1	95	Gcc/cc						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0006954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	75	641	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149497358	149497358	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35731372		P-0006954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	108	540	0	ENST00000261799.4:c.2960G>A	p.Arg987Gln	p.R987Q	ENST00000261799	NM_002609.3	987	cGg/cAg						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151878948	151878948	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	86	482	0	ENST00000262189.6:c.5997A>G	p.Ile1999Met	p.I1999M	ENST00000262189	NM_170606.2	1999	atA/atG						NEWRECORD																																																																									
HNF1A	6927	MSKCC	GRCh37	12	121431971	121431971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	103	493	0	ENST00000257555.6:c.718G>A	p.Glu240Lys	p.E240K	ENST00000257555		240	Gaa/Aaa						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9916266	9916266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	117	447	0	ENST00000330684.3:c.2023G>T	p.Asp675Tyr	p.D675Y	ENST00000330684	NM_001134407.1	675	Gac/Tac						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37868282	37868282	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	66	511	1	ENST00000269571.5:c.1003A>T	p.Ser335Cys	p.S335C	ENST00000269571		335	Agc/Tgc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1222987	1222987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	72	338	0	ENST00000326873.7:c.924G>T	p.Trp308Cys	p.W308C	ENST00000326873	NM_000455.4	308	tgG/tgT						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602370	10602370	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	143	534	0	ENST00000171111.5:c.1208G>A	p.Trp403Ter	p.W403*	ENST00000171111	NM_203500.1	403	tGg/tAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	66	456	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	42	269	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0007207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	108	404	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0007207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	50	293	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0007207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	101	349	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa						NEWRECORD																																																																									
RFWD2	64326	MSKCC	GRCh37	1	175956132	175956132	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	78	342	0	ENST00000367669.3:c.2080G>C	p.Asp694His	p.D694H	ENST00000367669	NM_022457.5	694	Gat/Cat						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67670719	67670719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	124	412	0	ENST00000264010.4:c.1964C>A	p.Pro655His	p.P655H	ENST00000264010	NM_006565.3	655	cCc/cAc						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15366129	15366129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	101	329	0	ENST00000263377.2:c.2026C>T	p.Arg676Trp	p.R676W	ENST00000263377	NM_058243.2	676	Cgg/Tgg						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70349925	70349925	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	124	471	0	ENST00000374080.3:c.3908A>G	p.Asp1303Gly	p.D1303G	ENST00000374080		1303	gAc/gGc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	187	209	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0008157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	123	189	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106523560	106523560	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	110	206	0	ENST00000359195.3:c.2712T>G	p.Asp904Glu	p.D904E	ENST00000359195	NM_002649.2	904	gaT/gaG						NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56872929	56872929	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0008157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1074	110	432	0	ENST00000308159.5:c.2084T>A	p.Leu695Ter	p.L695*	ENST00000308159	NM_014669.4	695	tTg/tAg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41420093	41420093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	43	125	0	ENST00000373198.4:c.228G>A	p.Met76Ile	p.M76I	ENST00000373198	NM_133170.3	76	atG/atA						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0006210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1311	202	587	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180057627	180057627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1295	148	787	0	ENST00000261937.6:c.328G>A	p.Val110Ile	p.V110I	ENST00000261937	NM_182925.4	110	Gtc/Atc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0006210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	65	316	0	ENST00000269305.4:c.97-1G>C		p.X33_splice	ENST00000269305	NM_001126112.2	33							NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70360597	70360597	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	112	503	0	ENST00000374080.3:c.6157C>T	p.Gln2053Ter	p.Q2053*	ENST00000374080		2053	Cag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	44	334	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	12	336	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48573505	48573506	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0007746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	55	421	0	ENST00000342988.3:c.94_95delAG	p.Ser32Ter	p.S32*	ENST00000342988	NM_005359.5	30	gGA/g						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66535450	66535450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	14	136	0	ENST00000273854.3:c.11C>T	p.Ser4Leu	p.S4L	ENST00000273854	NM_004439.5	4	tCg/tTg						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11297958	11297958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	39	358	0	ENST00000361445.4:c.2150G>A	p.Arg717Gln	p.R717Q	ENST00000361445	NM_004958.3	717	cGa/cAa						NEWRECORD																																																																									
MUTYH	4595	MSKCC	GRCh37	1	45797845	45797845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	49	358	0	ENST00000372115.3:c.884G>A	p.Arg295His	p.R295H	ENST00000372115	NM_001048171.1	295	cGc/cAc						NEWRECORD																																																																									
ERCC3	2071	MSKCC	GRCh37	2	128044408	128044408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	55	426	0	ENST00000285398.2:c.1213G>A	p.Val405Ile	p.V405I	ENST00000285398	NM_000122.1	405	Gtt/Att						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43606743	43606743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	46	398	0	ENST00000355710.3:c.1352C>T	p.Thr451Met	p.T451M	ENST00000355710	NM_020975.4	451	aCg/aTg						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21562996	21562996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	33	342	0	ENST00000382592.4:c.923C>T	p.Ala308Val	p.A308V	ENST00000382592	NM_014572.2	308	gCc/gTc						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66233143	66233143	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0009358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	421	452	0	ENST00000273854.3:c.1857-1G>T		p.X619_splice	ENST00000273854	NM_004439.5	619							NEWRECORD																																																																									
RHEB	6009	MSKCC	GRCh37	7	151167738	151167738	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0009358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	264	292	0	ENST00000262187.5:c.381G>T	p.Arg127Ser	p.R127S	ENST00000262187	NM_005614.3	127	agG/agT						NEWRECORD																																																																									
GNAQ	2776	MSKCC	GRCh37	9	80343559	80343559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	262	327	0	ENST00000286548.4:c.760C>T	p.Leu254Phe	p.L254F	ENST00000286548	NM_002072.3	254	Ctc/Ttc						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23641262	23641262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	65	378	0	ENST00000261584.4:c.2213G>A	p.Gly738Asp	p.G738D	ENST00000261584	NM_024675.3	738	gGc/gAc						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29559090	29559090	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0009358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	45	38	0	ENST00000358273.4:c.3198-1G>T		p.X1066_splice	ENST00000358273	NM_001042492.2	1066							NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1222983	1222983	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0009358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	151	190	0	ENST00000326873.7:c.921-1G>C		p.X307_splice	ENST00000326873	NM_000455.4	307							NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610463	10610463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	312	355	0	ENST00000171111.5:c.247G>T	p.Val83Phe	p.V83F	ENST00000171111	NM_203500.1	83	Gtc/Ttc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	49	414	0	ENST00000263967.3:c.3132T>A	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaA						NEWRECORD																																																																									
SOX2	6657	MSKCC	GRCh37	3	181430906	181430906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	23	536	1	ENST00000325404.1:c.758C>T	p.Pro253Leu	p.P253L	ENST00000325404	NM_003106.3	253	cCt/cTt						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131923712	131923712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	16	443	0	ENST00000265335.6:c.982G>A	p.Glu328Lys	p.E328K	ENST00000265335		328	Gaa/Aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577586	7577586	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	36	443	0	ENST00000269305.4:c.695T>G	p.Ile232Ser	p.I232S	ENST00000269305	NM_001126112.2	232	aTc/aGc						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0009399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1120	324	476	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150022928	150022928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	422	431	0	ENST00000253339.5:c.335C>T	p.Ala112Val	p.A112V	ENST00000253339		112	gCt/gTt						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151877878	151877878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	82	481	0	ENST00000262189.6:c.7067C>T	p.Pro2356Leu	p.P2356L	ENST00000262189	NM_170606.2	2356	cCt/cTt						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68835662	68835662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	330	651	3	ENST00000261769.5:c.253G>T	p.Val85Phe	p.V85F	ENST00000261769	NM_004360.3	85	Gtc/Ttc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579378	7579378	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0009399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	546	468	0	ENST00000269305.4:c.309C>G	p.Tyr103Ter	p.Y103*	ENST00000269305	NM_001126112.2	103	taC/taG						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	158	326	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
FH	2271	MSKCC	GRCh37	1	241682991	241682991	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1226883651		P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	120	221	0	ENST00000366560.3:c.32C>T	p.Ser11Leu	p.S11L	ENST00000366560	NM_000143.3	11	tCg/tTg						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89521676	89521676	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	113	346	0	ENST00000336596.2:c.2753A>T	p.Asp918Val	p.D918V	ENST00000336596	NM_005233.5	918	gAc/gTc						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89528639	89528639	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	68	252	0	ENST00000336596.2:c.2939C>A	p.Pro980Gln	p.P980Q	ENST00000336596	NM_005233.5	980	cCa/cAa						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189455614	189455614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	102	331	0	ENST00000264731.3:c.148C>T	p.Leu50Phe	p.L50F	ENST00000264731	NM_003722.4	50	Ctc/Ttc						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55136826	55136826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	79	409	0	ENST00000257290.5:c.1148G>T	p.Arg383Leu	p.R383L	ENST00000257290	NM_006206.4	383	cGt/cTt						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30671288	30671288	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	129	338	0	ENST00000376406.3:c.5589G>C	p.Lys1863Asn	p.K1863N	ENST00000376406	NM_014641.2	1863	aaG/aaC						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106520048	106520048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	141	315	0	ENST00000359195.3:c.2476G>A	p.Glu826Lys	p.E826K	ENST00000359195	NM_002649.2	826	Gaa/Aaa						NEWRECORD																																																																									
CDKN2B	1030	MSKCC	GRCh37	9	22006075	22006075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	274	210	1	ENST00000276925.6:c.328G>A	p.Asp110Asn	p.D110N	ENST00000276925	NM_004936.3	110	Gat/Aat						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28897069	28897069	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	139	216	0	ENST00000282397.4:c.2811C>A	p.His937Gln	p.H937Q	ENST00000282397	NM_002019.4	937	caC/caA						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110436513	110436513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1219	145	347	0	ENST00000375856.3:c.1888G>A	p.Glu630Lys	p.E630K	ENST00000375856	NM_003749.2	630	Gag/Aag						NEWRECORD																																																																									
TSHR	7253	MSKCC	GRCh37	14	81609337	81609337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	104	374	0	ENST00000298171.2:c.935G>A	p.Arg312Lys	p.R312K	ENST00000298171	NM_000369.2	312	aGa/aAa						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81946230	81946230	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1177	162	515	0	ENST00000359376.3:c.1963G>C	p.Glu655Gln	p.E655Q	ENST00000359376	NM_002661.3	655	Gag/Cag						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41228526	41228526	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	138	439	0	ENST00000357654.3:c.4463A>G	p.Asn1488Ser	p.N1488S	ENST00000357654	NM_007294.3	1488	aAt/aGt						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63412791	63412791	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	85	378	0	ENST00000330258.3:c.376C>A	p.Gln126Lys	p.Q126K	ENST00000330258	NM_152424.3	126	Caa/Aaa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0004927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			5599	271	401	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0004927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	4194	478	5	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50367288	50367288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775793261		P-0004927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1962	251	371	2	ENST00000331340.3:c.95C>T	p.Pro32Leu	p.P32L	ENST00000331340	NM_006060.4	32	cCg/cTg						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72992637	72992637	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	358	450	1	ENST00000268489.5:c.1408G>T	p.Glu470Ter	p.E470*	ENST00000268489	NM_006885.3	470	Gaa/Taa						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44527560	44527560	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0004927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	239	420	0	ENST00000291552.4:c.44+1G>A		p.X15_splice	ENST00000291552	NM_006758.2	15							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	74	381	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0006136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	108	497	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112170777	112170780	+	frameshift_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0006136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	94	530	0	ENST00000257430.4:c.1875_1878del	p.Asn627LeufsTer2	p.N627Lfs*2	ENST00000257430	NM_000038.5	625	CAGAca/ca						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575080	48575080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	81	447	0	ENST00000342988.3:c.274C>T	p.His92Tyr	p.H92Y	ENST00000342988	NM_005359.5	92	Cat/Tat						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66468014	66468014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	41	272	1	ENST00000273854.3:c.255G>T	p.Glu85Asp	p.E85D	ENST00000273854	NM_004439.5	85	gaG/gaT						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	69	379	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484595	57484595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	53	216	0	ENST00000371085.3:c.679C>A	p.Gln227Lys	p.Q227K	ENST00000371085	NM_000516.4	227	Cag/Aag						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8341250	8341250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	40	318	0	ENST00000356435.5:c.4966G>T	p.Ala1656Ser	p.A1656S	ENST00000356435		1656	Gct/Tct						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29754827	29754827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	119	362	0	ENST00000389048.3:c.1108G>A	p.Glu370Lys	p.E370K	ENST00000389048	NM_004304.4	370	Gag/Aag						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162745633	162745633	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	130	360	0	ENST00000367921.3:c.2048G>T	p.Ser683Ile	p.S683I	ENST00000367921	NM_006182.2	683	aGt/aTt						NEWRECORD																																																																									
RFWD2	64326	MSKCC	GRCh37	1	176012866	176012866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	74	479	0	ENST00000367669.3:c.1510C>A	p.Gln504Lys	p.Q504K	ENST00000367669	NM_022457.5	504	Cag/Aag						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25965523	25965523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	159	515	1	ENST00000435504.4:c.3683G>A	p.Ser1228Asn	p.S1228N	ENST00000435504		1228	aGc/aAc						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99156012	99156012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	193	500	2	ENST00000074304.5:c.692G>A	p.Arg231His	p.R231H	ENST00000074304	NM_001134224.1	231	cGc/cAc						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212285262	212285262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	60	366	0	ENST00000342788.4:c.3039G>T	p.Leu1013Phe	p.L1013F	ENST00000342788	NM_005235.2	1013	ttG/ttT						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1294214	1294214	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	52	275	0	ENST00000310581.5:c.787C>A	p.Arg263Ser	p.R263S	ENST00000310581	NM_198253.2	263	Cgt/Agt						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117622181	117622181	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	98	412	0	ENST00000368508.3:c.6689G>T	p.Arg2230Ile	p.R2230I	ENST00000368508	NM_002944.2	2230	aGa/aTa						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117718167	117718167	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	78	430	0	ENST00000368508.3:c.690A>T	p.Leu230Phe	p.L230F	ENST00000368508	NM_002944.2	230	ttA/ttT						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21970991	21970991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	42	244	0	ENST00000304494.5:c.367C>A	p.His123Asn	p.H123N	ENST00000304494	NM_000077.4	123	Cat/Aat						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133759778	133759778	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	26	196	0	ENST00000318560.5:c.2101G>T	p.Gly701Cys	p.G701C	ENST00000318560	NM_005157.4	701	Ggc/Tgc						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5211748	5211748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	67	404	0	ENST00000357368.4:c.5087G>T	p.Arg1696Leu	p.R1696L	ENST00000357368	NM_002850.3	1696	cGc/cTc						NEWRECORD																																																																									
H3F3C	440093	MSKCC	GRCh37	12	31944884	31944884	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	40	277	0	ENST00000340398.3:c.217del	p.Glu73ArgfsTer10	p.E73Rfs*10	ENST00000340398	NM_001013699.2	73	Gag/ag						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	T			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	74	458	0	ENST00000326873.7:c.836_837delinsT	p.Gly279ValfsTer8	p.G279Vfs*8	ENST00000326873	NM_000455.4	279	gGC/gT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0009375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	271	553	3	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007411-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			787	250	383	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89685307	89685307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007411-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			386	195	317	0	ENST00000371953.3:c.202T>C	p.Tyr68His	p.Y68H	ENST00000371953	NM_000314.4	68	Tac/Cac						NEWRECORD																																																																									
HIST1H3B	8358	MSKCC	GRCh37	6	26032039	26032039	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007411-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1127	367	898	0	ENST00000244661.2:c.250C>A	p.Arg84Ser	p.R84S	ENST00000244661	NM_003537.3	84	Cgc/Agc						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89391128	89391128	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007411-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			584	186	355	0	ENST00000336596.2:c.1194C>A	p.Asp398Glu	p.D398E	ENST00000336596	NM_005233.5	398	gaC/gaA						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143094826	143094842	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAATGCTGGCTTGCA	GAGAATGCTGGCTTGCA	-			P-0009240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	364	405	0	ENST00000262992.4:c.1302_1318del	p.Ala435ArgfsTer43	p.A435Rfs*43	ENST00000262992	NM_001101669.1	434	tcTGCAAGCCAGCATTCTCca/tcca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578508	7578535	+	protein_altering_variant	In_Frame_Del	DEL	CAGGTCTTGGCCAGTTGGCAAAACATCT	CAGGTCTTGGCCAGTTGGCAAAACATCT	G			P-0009240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	428	327	0	ENST00000269305.4:c.395_422delinsC	p.Lys132_Cys141delinsThr	p.K132_C141delinsT	ENST00000269305	NM_001126112.2	132	aAGATGTTTTGCCAACTGGCCAAGACCTGc/aCc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	260	386	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0009813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	483	606	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT						NEWRECORD																																																																									
CXCR4	7852	MSKCC	GRCh37	2	136872863	136872863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	725	1087	0	ENST00000241393.3:c.635G>T	p.Gly212Val	p.G212V	ENST00000241393	NM_003467.2	212	gGt/gTt						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57859450	57859450	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	615	1023	0	ENST00000228682.2:c.595A>G	p.Met199Val	p.M199V	ENST00000228682	NM_005269.2	199	Atg/Gtg						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98209721	98209721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	109	343	0	ENST00000331920.6:c.3817G>A	p.Glu1273Lys	p.E1273K	ENST00000331920	NM_000264.3	1273	Gaa/Aaa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380276	+	missense_variant	Missense_Mutation	DNP	TT	TT	GA			P-0008344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1254	507	597	1	ENST00000256078.4:c.182_183delinsTC	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAA/cTC						NEWRECORD																																																																									
HIST1H3A	8350	MSKCC	GRCh37	6	26020949	26020949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1219	977	1153	5	ENST00000357647.3:c.232G>A	p.Asp78Asn	p.D78N	ENST00000357647	NM_003529.2	78	Gac/Aac						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118374676	118374676	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	220	680	0	ENST00000534358.1:c.8069C>A	p.Thr2690Lys	p.T2690K	ENST00000534358	NM_005933.3	2690	aCa/aAa						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49433532	49433532	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	475	779	0	ENST00000301067.7:c.8021A>G	p.Gln2674Arg	p.Q2674R	ENST00000301067	NM_003482.3	2674	cAa/cGa						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7125313	7125313	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1109	351	568	0	ENST00000302850.5:c.3239G>C	p.Gly1080Ala	p.G1080A	ENST00000302850	NM_000208.2	1080	gGc/gCc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0009004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	207	412	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198266611	198266611	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs755415626		P-0009004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	41	354	0	ENST00000335508.6:c.2225G>A	p.Gly742Asp	p.G742D	ENST00000335508	NM_012433.2	742	gGt/gAt						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50468036	50468036	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	74	353	0	ENST00000331340.3:c.1271A>G	p.Asn424Ser	p.N424S	ENST00000331340	NM_006060.4	424	aAc/aGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577080	7577087	+	frameshift_variant	Frame_Shift_Del	DEL	TTCCTCTG	TTCCTCTG	-			P-0009004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1229	84	488	0	ENST00000269305.4:c.851_858del	p.Thr284ArgfsTer19	p.T284Rfs*19	ENST00000269305	NM_001126112.2	284	aCAGAGGAA/a						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0009215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	55	262	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	324	420	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	187	457	0	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87342596	87342596	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	111	493	0	ENST00000277120.3:c.881C>G	p.Ser294Cys	p.S294C	ENST00000277120		294	tCt/tGt						NEWRECORD																																																																									
AXL	558	MSKCC	GRCh37	19	41762514	41762514	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0005257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	127	444	0	ENST00000301178.4:c.2194G>C	p.Val732Leu	p.V732L	ENST00000301178	NM_021913.4	732	Gtg/Ctg						NEWRECORD																																																																									
AURKA	6790	MSKCC	GRCh37	20	54948488	54948488	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	145	525	0	ENST00000312783.6:c.830G>A	p.Trp277Ter	p.W277*	ENST00000312783	NM_198436.1	277	tGg/tAg						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39922936	39922936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	181	716	0	ENST00000378444.4:c.3772G>A	p.Gly1258Ser	p.G1258S	ENST00000378444	NM_001123385.1	1258	Ggc/Agc						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63411489	63411489	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200798538		P-0005257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	303	820	0	ENST00000330258.3:c.1678C>T	p.Arg560Trp	p.R560W	ENST00000330258	NM_152424.3	560	Cgg/Tgg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48573478	48573479	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0005257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	187	627	0	ENST00000342988.3:c.63_64del	p.His21GlnfsTer6	p.H21Qfs*6	ENST00000342988	NM_005359.5	21	cAT/c						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0009526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	246	600	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0009526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	34	547	2	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156838432	156838432	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55909005		P-0009526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	269	364	0	ENST00000524377.1:c.710C>T	p.Thr237Met	p.T237M	ENST00000524377	NM_002529.3	237	aCg/aTg						NEWRECORD																																																																									
CUL3	8452	MSKCC	GRCh37	2	225365195	225365195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	191	319	0	ENST00000264414.4:c.1495G>A	p.Gly499Ser	p.G499S	ENST00000264414	NM_003590.4	499	Ggt/Agt						NEWRECORD																																																																									
IRS1	3667	MSKCC	GRCh37	2	227661965	227661965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	144	298	0	ENST00000305123.5:c.1490G>A	p.Gly497Glu	p.G497E	ENST00000305123	NM_005544.2	497	gGa/gAa						NEWRECORD																																																																									
PHOX2B	8929	MSKCC	GRCh37	4	41748296	41748296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	194	374	1	ENST00000226382.2:c.473G>A	p.Arg158His	p.R158H	ENST00000226382	NM_003924.3	158	cGc/cAc						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55961834	55961834	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0009526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	226	393	0	ENST00000263923.4:c.2729-2A>T		p.X910_splice	ENST00000263923	NM_002253.2	910							NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249501	153249501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1316840275		P-0009526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	178	361	0	ENST00000281708.4:c.1277C>T	p.Ser426Leu	p.S426L	ENST00000281708	NM_033632.3	426	tCa/tTa						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128829207	128829207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	126	301	0	ENST00000249373.3:c.215C>T	p.Pro72Leu	p.P72L	ENST00000249373	NM_005631.4	72	cCg/cTg						NEWRECORD																																																																									
HOXB13	10481	MSKCC	GRCh37	17	46804331	46804331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	238	671	1	ENST00000290295.7:c.676G>T	p.Gly226Trp	p.G226W	ENST00000290295	NM_006361.5	226	Ggg/Tgg						NEWRECORD																																																																									
TCF3	6929	MSKCC	GRCh37	19	1625615	1625615	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	188	700	3	ENST00000344749.5:c.459C>A	p.Tyr153Ter	p.Y153*	ENST00000344749	NM_001136139.2	153	taC/taA						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098784	178098825	+	inframe_deletion	In_Frame_Del	DEL	CTGAATTGGGAGAAATTCACCTGTCTCTTCATCTAGTTGTAA	CTGAATTGGGAGAAATTCACCTGTCTCTTCATCTAGTTGTAA	-			P-0009526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	428	594	0	ENST00000397062.3:c.220_261del	p.Leu74_Gln87del	p.L74_Q87del	ENST00000397062	NM_006164.4	74	TTACAACTAGATGAAGAGACAGGTGAATTTCTCCCAATTCAG/-						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48584514	48584514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	35	514	0	ENST00000342988.3:c.692delG	p.Gly231AlafsTer10	p.G231Afs*10	ENST00000342988	NM_005359.5	229	ctG/ct						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0005755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	21	462	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0005755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	54	602	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8100454	8100454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	18	686	1	ENST00000346208.3:c.428G>A	p.Gly143Glu	p.G143E	ENST00000346208		143	gGg/gAg						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47044497	47044497	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	36	340	0	ENST00000329236.7:c.1764del	p.Glu589LysfsTer37	p.E589Kfs*37	ENST00000329236	NM_001204466.1	587	cAa/ca						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70118998	70118998	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	78	691	0	ENST00000245479.2:c.571del	p.Glu191ArgfsTer28	p.E191Rfs*28	ENST00000245479	NM_000346.3	190	gaG/ga						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70338683	70338683	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	89	587	0	ENST00000374080.3:c.79C>G	p.Gln27Glu	p.Q27E	ENST00000374080		27	Cag/Gag						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66233143	66233143	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	78	414	0	ENST00000273854.3:c.1857-1G>A		p.X619_splice	ENST00000273854	NM_004439.5	619							NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151874026	151874026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	172	521	0	ENST00000262189.6:c.8512G>A	p.Glu2838Lys	p.E2838K	ENST00000262189	NM_170606.2	2838	Gaa/Aaa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151874065	151874065	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	200	534	0	ENST00000262189.6:c.8473G>T	p.Glu2825Ter	p.E2825*	ENST00000262189	NM_170606.2	2825	Gaa/Taa						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110435438	110435438	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	43	260	0	ENST00000375856.3:c.2963C>G	p.Ser988Cys	p.S988C	ENST00000375856	NM_003749.2	988	tCt/tGt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591933	48591933	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	82	383	0	ENST00000342988.3:c.1096C>G	p.Gln366Glu	p.Q366E	ENST00000342988	NM_005359.5	366	Caa/Gaa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27057937	27057937	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	67	439	0	ENST00000324856.7:c.1650delC	p.Tyr551ThrfsTer68	p.Y551Tfs*68	ENST00000324856	NM_006015.4	549	Ccc/cc						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56177746	56177773	+	protein_altering_variant	In_Frame_Del	DEL	CATTTAGAGAAAACTGGAAAAGGATTAT	CATTTAGAGAAAACTGGAAAAGGATTAT	G			P-0004790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	64	475	0	ENST00000399503.3:c.2719_2746delinsG	p.His907_Cys916delinsGly	p.H907_C916delinsG	ENST00000399503	NM_005921.1	907	CATTTAGAGAAAACTGGAAAAGGATTATgt/Ggt						NEWRECORD																																																																									
PMS2	5395	MSKCC	GRCh37	7	6035209	6035209	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0004946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	94	627	0	ENST00000265849.7:c.859A>T	p.Arg287Ter	p.R287*	ENST00000265849	NM_000535.5	287	Aga/Tga						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	10032029	10032029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	64	719	4	ENST00000330684.3:c.794C>T	p.Thr265Met	p.T265M	ENST00000330684	NM_001134407.1	265	aCg/aTg						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2226809	2226809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	24	268	2	ENST00000398665.3:c.4289C>T	p.Ala1430Val	p.A1430V	ENST00000398665	NM_032482.2	1430	gCg/gTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0005915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	952	469	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157527391	157527391	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	382	462	0	ENST00000346085.5:c.5116C>G	p.Pro1706Ala	p.P1706A	ENST00000346085	NM_020732.3	1706	Ccc/Gcc						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118359363	118359363	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1207	362	397	0	ENST00000534358.1:c.4367A>G	p.His1456Arg	p.H1456R	ENST00000534358	NM_005933.3	1456	cAc/cGc						NEWRECORD																																																																									
ARAF	369	MSKCC	GRCh37	X	47422454	47422454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1953	804	329	1	ENST00000377045.4:c.88C>T	p.Arg30Cys	p.R30C	ENST00000377045	NM_001654.4	30	Cgc/Tgc						NEWRECORD																																																																									
ARAF	369	MSKCC	GRCh37	X	47430720	47430720	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0005915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1981	180	276	0	ENST00000377045.4:c.1687-2A>T		p.X563_splice	ENST00000377045	NM_001654.4	563							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	37	340	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0007533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	85	92	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt						NEWRECORD																																																																									
PIK3CB	5291	MSKCC	GRCh37	3	138426070	138426070	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	442	485	0	ENST00000289153.2:c.1461T>A	p.Asn487Lys	p.N487K	ENST00000289153	NM_006219.2	487	aaT/aaA						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23625405	23625405	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	376	447	0	ENST00000261584.4:c.3121A>G	p.Lys1041Glu	p.K1041E	ENST00000261584	NM_024675.3	1041	Aaa/Gaa						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2207631	2207631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	154	579	1	ENST00000398665.3:c.915G>T	p.Trp305Cys	p.W305C	ENST00000398665	NM_032482.2	305	tgG/tgT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	131	397	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331							NEWRECORD																																																																									
FOXP1	27086	MSKCC	GRCh37	3	71026112	71026112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	63	349	0	ENST00000318789.4:c.1510C>T	p.Arg504Cys	p.R504C	ENST00000318789	NM_032682.5	504	Cgc/Tgc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023261	27023261	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	87	194	0	ENST00000324856.7:c.367G>T	p.Gly123Cys	p.G123C	ENST00000324856	NM_006015.4	123	Ggc/Tgc						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142215271	142215271	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	114	469	0	ENST00000350721.4:c.5830C>G	p.Leu1944Val	p.L1944V	ENST00000350721	NM_001184.3	1944	Ctc/Gtc						NEWRECORD																																																																									
HLA-A	3105	MSKCC	GRCh37	6	29911214	29911214	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	31	260	0	ENST00000376809.5:c.513G>A	p.Trp171Ter	p.W171*	ENST00000376809	NM_002116.7	171	tgG/tgA						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30673419	30673419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	146	429	1	ENST00000376406.3:c.3541G>T	p.Glu1181Ter	p.E1181*	ENST00000376406	NM_014641.2	1181	Gag/Tag						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117629961	117629961	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	43	390	0	ENST00000368508.3:c.6565G>C	p.Asp2189His	p.D2189H	ENST00000368508	NM_002944.2	2189	Gat/Cat						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117704661	117704661	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	69	316	0	ENST00000368508.3:c.2315A>T	p.Gln772Leu	p.Q772L	ENST00000368508	NM_002944.2	772	cAg/cTg						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43623655	43623655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	136	445	0	ENST00000355710.3:c.3283G>T	p.Val1095Leu	p.V1095L	ENST00000355710	NM_020975.4	1095	Gta/Tta						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49427446	49427446	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	143	479	0	ENST00000301067.7:c.11042A>T	p.Gln3681Leu	p.Q3681L	ENST00000301067	NM_003482.3	3681	cAg/cTg						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95574364	95574364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	95	393	0	ENST00000343455.3:c.2503G>A	p.Gly835Ser	p.G835S	ENST00000343455	NM_177438.2	835	Ggt/Agt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49427027	49427027	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	46	295	0	ENST00000301067.7:c.11461del	p.Gln3821ArgfsTer9	p.Q3821Rfs*9	ENST00000301067	NM_003482.3	3821	Cag/ag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0009277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	74	421	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600326	10600326	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	68	439	0	ENST00000171111.5:c.1529C>T	p.Ala510Val	p.A510V	ENST00000171111	NM_203500.1	510	gCa/gTa						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65300283	65300283	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			58	378	335	0	ENST00000342505.4:c.3427C>T	p.Gln1143Ter	p.Q1143*	ENST00000342505	NM_002227.2	1143	Cag/Tag						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47162147	47162147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	323	427	1	ENST00000409792.3:c.3979G>A	p.Val1327Ile	p.V1327I	ENST00000409792	NM_014159.6	1327	Gta/Ata						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140534462	140534462	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	728	556	0	ENST00000288602.6:c.451T>G	p.Ser151Ala	p.S151A	ENST00000288602	NM_004333.4	151	Tca/Gca						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46244875	46244875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1199	998	823	1	ENST00000334344.6:c.2969C>T	p.Ser990Leu	p.S990L	ENST00000334344	NM_152641.2	990	tCg/tTg						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0008727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	22	549	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175755	112175755	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	14	358	0	ENST00000257430.4:c.4464del	p.Leu1488PhefsTer19	p.L1488Ffs*19	ENST00000257430	NM_000038.5	1488	ttA/tt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0008727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	16	319	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0008727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	67	445	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
MYC	4609	MSKCC	GRCh37	8	128752845	128752845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	76	254	1	ENST00000377970.2:c.1006G>A	p.Ala336Thr	p.A336T	ENST00000377970	NM_002467.4	336	Gct/Act						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89624272	89624272	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	51	183	0	ENST00000371953.3:c.46T>G	p.Tyr16Asp	p.Y16D	ENST00000371953	NM_000314.4	16	Tat/Gat						NEWRECORD																																																																									
STAT5A	6776	MSKCC	GRCh37	17	40456400	40456400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	77	877	0	ENST00000345506.4:c.1210G>A	p.Glu404Lys	p.E404K	ENST00000345506	NM_003152.3	404	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579434	7579715	+	splice_acceptor_variant,splice_donor_variant,frameshift_variant,stop_lost,intron_variant	Splice_Site	DEL	GGGCCGCCGGTGTAGGAGCTGCTGGTGCAGGGGCCACGGGGGGAGCAGCCTCTGGCATTCTGGGAGCTTCATCTGGACCTGGGTCTTCAGTGAACCATTGTTCAATATCGTCCGGGGACAGCATCAAATCATCCATTGCTTGGGACGGCAAGGGGGACTGTAGATGGGTGAAAAGAGCAGTCAGAGGACCAGGTCCTCAGCCCCCCAGCCCCCCAGCCCTCCAGGTCCCCAGCCCTCCAGGTCCCCAGCCCAACCCTTGTCCTTACCAGAACGTTGTTTTCA	GGGCCGCCGGTGTAGGAGCTGCTGGTGCAGGGGCCACGGGGGGAGCAGCCTCTGGCATTCTGGGAGCTTCATCTGGACCTGGGTCTTCAGTGAACCATTGTTCAATATCGTCCGGGGACAGCATCAAATCATCCATTGCTTGGGACGGCAAGGGGGACTGTAGATGGGTGAAAAGAGCAGTCAGAGGACCAGGTCCTCAGCCCCCCAGCCCCCCAGCCCTCCAGGTCCCCAGCCCTCCAGGTCCCCAGCCCAACCCTTGTCCTTACCAGAACGTTGTTTTCA	-			P-0008727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	65	412	1	ENST00000269305.4:c.81_253del		p.X27_splice	ENST00000269305	NM_001126112.2	27	ccTGAAAACAACGTTCTGGTAAGGACAAGGGTTGGGCTGGGGACCTGGAGGGCTGGGGACCTGGAGGGCTGGGGGGCTGGGGGGCTGAGGACCTGGTCCTCTGACTGCTCTTTTCACCCATCTACAGTCCCCCTTGCCGTCCCAAGCAATGGATGATTTGATGCTGTCCCCGGACGATATTGAACAATGGTTCACTGAAGACCCAGGTCCAGATGAAGCTCCCAGAATGCCAGAGGCTGCTCCCCCCGTGGCCCCTGCACCAGCAGCTCCTACACCGGCGGCCCct/ccct						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114710571	114710574	+	frameshift_variant	Frame_Shift_Del	DEL	TTTC	TTTC	-			P-0008727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	298	1070	0	ENST00000543371.1:c.56_59del	p.Ile19ThrfsTer22	p.I19Tfs*22	ENST00000543371	NM_001198531.1	19	aTTTCc/ac						NEWRECORD																																																																									
H3F3A	3020	MSKCC	GRCh37	1	226253377	226253377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	60	319	0	ENST00000366813.1:c.149G>A	p.Arg50His	p.R50H	ENST00000366813		50	cGt/cAt						NEWRECORD																																																																									
MST1R	4486	MSKCC	GRCh37	3	49924822	49924822	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202007332		P-0006750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1065	140	992	2	ENST00000296474.3:c.4121G>A	p.Arg1374His	p.R1374H	ENST00000296474	NM_002447.2	1374	cGt/cAt						NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14029336	14029336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	100	709	2	ENST00000311895.7:c.1547G>A	p.Arg516Gln	p.R516Q	ENST00000311895	NM_005236.2	516	cGa/cAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577043	7577489	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTCGTGGTGAGGCTCCCCTTTCTTGCGGAGATTCTCTTCCTCTGTGCGCCGGTCTCTCCCAGGACAGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCACTACTCAGGATAGGAAAAGAGAAGCAAGAGGCAGTAAGGAAATCAGGTCCTACCTGTCCCATTTAAAAAACCAGGCTCCATCTACTCCCAACCACCCTTGTCCTTTCTGGAGCCTAAGCTCCAGCTCCAGGTAGGTGGAGGAGAAGCCACAGGTTAAGAGGTCCCAAAGCCAGAGAAAAGAAAACTGAGTGGGAGCAGTAAGGAGATTCCCCGCCGGGGATGTGATGAGAGGTGGATGGGTAGTAGTATGGAAGAAATCGGTAAGAGGTGGGCCCAGGGGTCAGAGGCAAGCAGAGGCTGGGGCACAGCAGGCCAGTGTGCAGGGTGGCAAGTG	GCTCGTGGTGAGGCTCCCCTTTCTTGCGGAGATTCTCTTCCTCTGTGCGCCGGTCTCTCCCAGGACAGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCACTACTCAGGATAGGAAAAGAGAAGCAAGAGGCAGTAAGGAAATCAGGTCCTACCTGTCCCATTTAAAAAACCAGGCTCCATCTACTCCCAACCACCCTTGTCCTTTCTGGAGCCTAAGCTCCAGCTCCAGGTAGGTGGAGGAGAAGCCACAGGTTAAGAGGTCCCAAAGCCAGAGAAAAGAAAACTGAGTGGGAGCAGTAAGGAGATTCCCCGCCGGGGATGTGATGAGAGGTGGATGGGTAGTAGTATGGAAGAAATCGGTAAGAGGTGGGCCCAGGGGTCAGAGGCAAGCAGAGGCTGGGGCACAGCAGGCCAGTGTGCAGGGTGGCAAGTG	-			P-0006750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	70	520	0	ENST00000269305.4:c.782+10_895del		p.X261_splice	ENST00000269305	NM_001126112.2	261							NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174171	112174171	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	130	616	0	ENST00000257430.4:c.2882del	p.Asn961MetfsTer4	p.N961Mfs*4	ENST00000257430	NM_000038.5	960	tcA/tc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs878854073		P-0008875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	177	235	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225							NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115258744	115258744	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434596		P-0008875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	242	400	0	ENST00000369535.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000369535	NM_002524.4	13	gGt/gAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0008875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	84	371	4	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0008875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	39	239	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa						NEWRECORD																																																																									
NEGR1	257194	MSKCC	GRCh37	1	72076805	72076805	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	91	389	0	ENST00000357731.5:c.692A>C	p.Lys231Thr	p.K231T	ENST00000357731	NM_173808.2	231	aAa/aCa						NEWRECORD																																																																									
INHA	3623	MSKCC	GRCh37	2	220440102	220440102	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	72	632	0	ENST00000243786.2:c.955T>G	p.Ser319Ala	p.S319A	ENST00000243786	NM_002191.3	319	Tcc/Gcc						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2226370	2226370	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	74	366	0	ENST00000398665.3:c.3850G>C	p.Ala1284Pro	p.A1284P	ENST00000398665	NM_032482.2	1284	Gcc/Ccc						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66931285	66931285	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	219	340	0	ENST00000374690.3:c.1927G>T	p.Glu643Ter	p.E643*	ENST00000374690	NM_000044.3	643	Gaa/Taa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0008719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	41	351	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
NF2	4771	MSKCC	GRCh37	22	30067836	30067836	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	98	228	0	ENST00000338641.4:c.1021C>T	p.Arg341Ter	p.R341*	ENST00000338641	NM_000268.3	341	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	29	124	0	ENST00000269305.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000269305	NM_001126112.2	105	Ggc/Tgc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0005123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	61	198	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38947422	38947422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	17	256	0	ENST00000357387.3:c.4258G>A	p.Gly1420Ser	p.G1420S	ENST00000357387	NM_152756.3	1420	Ggt/Agt						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	94067998	94067998	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	12	345	0	ENST00000369303.4:c.964G>T	p.Asp322Tyr	p.D322Y	ENST00000369303	NM_004440.3	322	Gac/Tac						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50468274	50468274	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	11	150	0	ENST00000331340.3:c.1509C>A	p.Tyr503Ter	p.Y503*	ENST00000331340	NM_006060.4	503	taC/taA						NEWRECORD																																																																									
NKX2-1	7080	MSKCC	GRCh37	14	36988508	36988508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	38	189	0	ENST00000354822.5:c.145C>A	p.Pro49Thr	p.P49T	ENST00000354822	NM_001079668.2	49	Ccc/Acc						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44918677	44918677	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	19	241	0	ENST00000377967.4:c.1160C>G	p.Thr387Ser	p.T387S	ENST00000377967	NM_021140.2	387	aCc/aGc						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0009501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	712	286	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	166	354	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66535456	66535456	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	26	100	0	ENST00000273854.3:c.5G>T	p.Arg2Leu	p.R2L	ENST00000273854	NM_004439.5	2	cGg/cTg						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	427495	427495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	215	407	0	ENST00000399788.2:c.2674C>T	p.Pro892Ser	p.P892S	ENST00000399788	NM_001042603.1	892	Cca/Tca						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86679538	86679538	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	99	233	0	ENST00000274376.6:c.2703delT	p.Leu902PhefsTer9	p.L902Ffs*9	ENST00000274376	NM_002890.2	900	gTt/gt						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63810726	63810728	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-			P-0009501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	91	280	0	ENST00000279873.7:c.819_821del	p.Asn274del	p.N274del	ENST00000279873	NM_032199.2	271	tcCAAc/tcc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	23	342	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	35	485	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55371962	55371962	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	10	115	0	ENST00000297316.4:c.652C>A	p.Pro218Thr	p.P218T	ENST00000297316	NM_022454.3	218	Ccg/Acg						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145741800	145741800	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	134	417	0	ENST00000428558.2:c.703C>G	p.Gln235Glu	p.Q235E	ENST00000428558	NM_004260.3	235	Cag/Gag						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72984817	72984817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	87	566	0	ENST00000268489.5:c.2767G>T	p.Val923Leu	p.V923L	ENST00000268489	NM_006885.3	923	Gtg/Ttg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	114	311	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	185	415	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89499462	89499462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	340	451	0	ENST00000336596.2:c.2632C>A	p.Leu878Met	p.L878M	ENST00000336596	NM_005233.5	878	Ctg/Atg						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55370910	55370910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	569	448	0	ENST00000297316.4:c.212C>T	p.Pro71Leu	p.P71L	ENST00000297316	NM_022454.3	71	cCg/cTg						NEWRECORD																																																																									
HNF1A	6927	MSKCC	GRCh37	12	121437341	121437341	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	125	408	0	ENST00000257555.6:c.1679C>G	p.Ser560Cys	p.S560C	ENST00000257555		560	tCt/tGt						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37879580	37879580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	139	362	1	ENST00000269571.5:c.1955C>T	p.Thr652Met	p.T652M	ENST00000269571		652	aCg/aTg						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45423004	45423004	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	311	463	0	ENST00000262160.6:c.124G>C	p.Glu42Gln	p.E42Q	ENST00000262160	NM_005901.5	42	Gag/Cag						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46245855	46245855	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	336	468	0	ENST00000334344.6:c.3950del	p.Asn1317IlefsTer5	p.N1317Ifs*5	ENST00000334344	NM_152641.2	1317	Aat/at						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114920430	114920430	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1125	273	590	0	ENST00000543371.1:c.1373del	p.Leu458TyrfsTer33	p.L458Yfs*33	ENST00000543371	NM_001198531.1	457	acT/ac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0007214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	241	419	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0007214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	348	583	1	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0007214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	106	373	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	239	410	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81960734	81960734	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1556	189	740	0	ENST00000359376.3:c.2465A>C	p.Asn822Thr	p.N822T	ENST00000359376	NM_002661.3	822	aAc/aCc						NEWRECORD																																																																									
RARA	5914	MSKCC	GRCh37	17	38508234	38508234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1230	148	579	0	ENST00000254066.5:c.542C>T	p.Thr181Met	p.T181M	ENST00000254066	NM_000964.3	181	aCg/aTg						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157100117	157100119	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs1450867853		P-0006873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	10	26	0	ENST00000346085.5:c.1069_1071del	p.Gly357del	p.G357del	ENST00000346085	NM_020732.3	352	GGC/-						NEWRECORD																																																																									
NFKBIA	4792	MSKCC	GRCh37	14	35872450	35872450	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1822	114	476	0	ENST00000216797.5:c.453del	p.Cys152ValfsTer12	p.C152Vfs*12	ENST00000216797	NM_020529.2	151	gcC/gc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	481	348	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
MRE11A	4361	MSKCC	GRCh37	11	94180459	94180459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1307	260	611	0	ENST00000323929.3:c.1709G>A	p.Arg570Lys	p.R570K	ENST00000323929	NM_005591.3	570	aGa/aAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0007320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	207	503	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc						NEWRECORD																																																																									
HIST1H3J	8356	MSKCC	GRCh37	6	27858513	27858513	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1535	153	794	3	ENST00000359303.2:c.58C>T	p.Gln20Ter	p.Q20*	ENST00000359303	NM_003535.2	20	Cag/Tag						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32184818	32184818	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	154	338	0	ENST00000375023.3:c.1765G>T	p.Glu589Ter	p.E589*	ENST00000375023	NM_004557.3	589	Gag/Tag						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88423617	88423617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	90	403	0	ENST00000360948.2:c.2218G>A	p.Glu740Lys	p.E740K	ENST00000360948	NM_001012338.2	740	Gaa/Aaa						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	396	418	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	409	325	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56482537	56482537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	280	291	0	ENST00000267101.3:c.994G>A	p.Glu332Lys	p.E332K	ENST00000267101	NM_001982.3	332	Gag/Aag						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157222555	157222555	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	259	417	0	ENST00000346085.5:c.1822C>T	p.Gln608Ter	p.Q608*	ENST00000346085	NM_020732.3	608	Cag/Tag						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	299	465	0	ENST00000281708.4:c.1393C>A	p.Arg465Ser	p.R465S	ENST00000281708	NM_033632.3	465	Cgt/Agt						NEWRECORD																																																																									
NF2	4771	MSKCC	GRCh37	22	30077427	30077427	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	100	172	0	ENST00000338641.4:c.1575-1G>C		p.X525_splice	ENST00000338641	NM_000268.3	525							NEWRECORD																																																																									
TNFRSF14	8764	MSKCC	GRCh37	1	2489796	2489796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	125	329	0	ENST00000355716.4:c.193G>A	p.Glu65Lys	p.E65K	ENST00000355716	NM_003820.2	65	Gag/Aag						NEWRECORD																																																																									
VTCN1	79679	MSKCC	GRCh37	1	117695932	117695932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	60	229	0	ENST00000369458.3:c.505G>A	p.Glu169Lys	p.E169K	ENST00000369458	NM_024626.3	169	Gag/Aag						NEWRECORD																																																																									
FAM46C	54855	MSKCC	GRCh37	1	118165614	118165614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	116	370	0	ENST00000369448.3:c.124C>T	p.Pro42Ser	p.P42S	ENST00000369448	NM_017709.3	42	Cca/Tca						NEWRECORD																																																																									
MCL1	4170	MSKCC	GRCh37	1	150550782	150550782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	257	286	0	ENST00000369026.2:c.874G>A	p.Glu292Lys	p.E292K	ENST00000369026	NM_021960.4	292	Gaa/Aaa						NEWRECORD																																																																									
RFWD2	64326	MSKCC	GRCh37	1	175996734	175996734	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	167	542	0	ENST00000367669.3:c.1703G>C	p.Arg568Thr	p.R568T	ENST00000367669	NM_022457.5	568	aGa/aCa						NEWRECORD																																																																									
CASP8	841	MSKCC	GRCh37	2	202149568	202149568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	292	431	1	ENST00000358485.4:c.1009C>A	p.His337Asn	p.H337N	ENST00000358485	NM_001080125.1	337	Cat/Aat						NEWRECORD																																																																									
IRS1	3667	MSKCC	GRCh37	2	227662772	227662772	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	248	388	0	ENST00000305123.5:c.683C>G	p.Ser228Cys	p.S228C	ENST00000305123	NM_005544.2	228	tCt/tGt						NEWRECORD																																																																									
RAF1	5894	MSKCC	GRCh37	3	12645693	12645693	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	290	388	0	ENST00000251849.4:c.776C>G	p.Ser259Cys	p.S259C	ENST00000251849	NM_002880.3	259	tCc/tGc						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89259244	89259244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	230	386	0	ENST00000336596.2:c.388G>A	p.Asp130Asn	p.D130N	ENST00000336596	NM_005233.5	130	Gat/Aat						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142217568	142217568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	287	397	1	ENST00000350721.4:c.5429C>T	p.Ser1810Leu	p.S1810L	ENST00000350721	NM_001184.3	1810	tCa/tTa						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55953819	55953819	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1148	157	494	1	ENST00000263923.4:c.3617A>T	p.Glu1206Val	p.E1206V	ENST00000263923	NM_002253.2	1206	gAa/gTa						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38949814	38949814	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	232	325	0	ENST00000357387.3:c.4136G>A	p.Arg1379Lys	p.R1379K	ENST00000357387	NM_152756.3	1379	aGg/aAg						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86564633	86564633	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	129	371	0	ENST00000274376.6:c.365C>A	p.Ser122Ter	p.S122*	ENST00000274376	NM_002890.2	122	tCg/tAg						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149499089	149499089	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	174	383	0	ENST00000261799.4:c.2739C>G	p.Phe913Leu	p.F913L	ENST00000261799	NM_002609.3	913	ttC/ttG						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176721807	176721807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	124	297	0	ENST00000439151.2:c.7438G>A	p.Asp2480Asn	p.D2480N	ENST00000439151	NM_022455.4	2480	Gat/Aat						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32169207	32169207	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	111	311	0	ENST00000375023.3:c.3826G>C	p.Glu1276Gln	p.E1276Q	ENST00000375023	NM_004557.3	1276	Gag/Cag						NEWRECORD																																																																									
NBN	4683	MSKCC	GRCh37	8	90970960	90970960	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	236	450	0	ENST00000265433.3:c.1117G>C	p.Asp373His	p.D373H	ENST00000265433	NM_002485.4	373	Gat/Cat						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139391559	139391559	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	303	326	0	ENST00000277541.6:c.6632C>G	p.Ser2211Ter	p.S2211*	ENST00000277541	NM_017617.3	2211	tCa/tGa						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57865491	57865491	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	463	617	0	ENST00000228682.2:c.2968C>G	p.Arg990Gly	p.R990G	ENST00000228682	NM_005269.2	990	Cga/Gga						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133249789	133249789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	286	447	0	ENST00000320574.5:c.1434C>G	p.Ile478Met	p.I478M	ENST00000320574	NM_006231.2	478	atC/atG						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15354025	15354025	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	47	60	1	ENST00000263377.2:c.2855C>A	p.Ser952Tyr	p.S952Y	ENST00000263377	NM_058243.2	952	tCc/tAc						NEWRECORD																																																																									
ERCC2	2068	MSKCC	GRCh37	19	45867325	45867325	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	75	184	0	ENST00000391945.4:c.868G>C	p.Glu290Gln	p.E290Q	ENST00000391945	NM_000400.3	290	Gag/Cag						NEWRECORD																																																																									
TOP1	7150	MSKCC	GRCh37	20	39741503	39741503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	273	330	1	ENST00000361337.2:c.1390G>A	p.Asp464Asn	p.D464N	ENST00000361337	NM_003286.2	464	Gac/Aac						NEWRECORD																																																																									
TOP1	7150	MSKCC	GRCh37	20	39744068	39744068	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	206	341	0	ENST00000361337.2:c.1696G>C	p.Asp566His	p.D566H	ENST00000361337	NM_003286.2	566	Gat/Cat						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40735487	40735487	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	254	445	0	ENST00000373198.4:c.3386T>G	p.Val1129Gly	p.V1129G	ENST00000373198	NM_133170.3	1129	gTg/gGg						NEWRECORD																																																																									
NF2	4771	MSKCC	GRCh37	22	30077543	30077543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	284	386	0	ENST00000338641.4:c.1690G>A	p.Glu564Lys	p.E564K	ENST00000338641	NM_000268.3	564	Gag/Aag						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52441201	52441201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	185	581	2	ENST00000460680.1:c.569C>A	p.Pro190His	p.P190H	ENST00000460680	NM_004656.3	190	cCc/cAc						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139391577	139391577	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	451	733	1	ENST00000277541.6:c.6614C>A	p.Ser2205Ter	p.S2205*	ENST00000277541	NM_017617.3	2205	tCa/tAa						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47044735	47044735	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	242	711	0	ENST00000329236.7:c.1901A>T	p.Asp634Val	p.D634V	ENST00000329236	NM_001204466.1	634	gAt/gTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	84	379	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0007133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	13	283	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72993095	72993095	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1116	86	789	0	ENST00000268489.5:c.950T>A	p.Leu317His	p.L317H	ENST00000268489	NM_006885.3	317	cTt/cAt						NEWRECORD																																																																									
AURKA	6790	MSKCC	GRCh37	20	54945698	54945698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	26	189	0	ENST00000312783.6:c.872G>A	p.Gly291Asp	p.G291D	ENST00000312783	NM_198436.1	291	gGc/gAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175749	112175756	+	frameshift_variant	Frame_Shift_Del	DEL	TACTTTAT	TACTTTAT	-			P-0007133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	47	365	0	ENST00000257430.4:c.4461_4468delTTTATTAC	p.Leu1488PhefsTer23	p.L1488Ffs*23	ENST00000257430	NM_000038.5	1486	gaTACTTTATta/gata						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	48	280	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	56	282	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0006686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	55	223	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag						NEWRECORD																																																																									
FOXL2	668	MSKCC	GRCh37	3	138665101	138665101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	36	98	0	ENST00000330315.3:c.464C>T	p.Pro155Leu	p.P155L	ENST00000330315	NM_023067.3	155	cCg/cTg						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32421519	32421519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	45	252	2	ENST00000332351.3:c.1073C>T	p.Thr358Met	p.T358M	ENST00000332351	NM_024426.4	358	aCg/aTg						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37880998	37880998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	73	434	0	ENST00000269571.5:c.2327G>T	p.Gly776Val	p.G776V	ENST00000269571		776	gGt/gTt						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42799177	42799177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	22	159	0	ENST00000575354.2:c.4661C>A	p.Ala1554Glu	p.A1554E	ENST00000575354	NM_015125.3	1554	gCa/gAa						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42058477	42058477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	11	1272	4	ENST00000219905.7:c.8197G>A	p.Val2733Ile	p.V2733I	ENST00000219905	NM_001164273.1	2733	Gtt/Att						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	272	647	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	401	911	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	217	616	2	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	211	748	0	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	526	712	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc						NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	69	884	0	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987							NEWRECORD																																																																									
IKBKE	9641	MSKCC	GRCh37	1	206652411	206652411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	280	711	0	ENST00000367120.3:c.1118C>T	p.Thr373Met	p.T373M	ENST00000367120	NM_014002.3	373	aCg/aTg						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	334	1061	11	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag						NEWRECORD																																																																									
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	309	622	2	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac						NEWRECORD																																																																									
CASP8	841	MSKCC	GRCh37	2	202149799	202149799	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	290	674	0	ENST00000358485.4:c.1245delT	p.Phe415LeufsTer26	p.F415Lfs*26	ENST00000358485	NM_001080125.1	414	Ttt/tt						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1279527	1279527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	151	673	0	ENST00000310581.5:c.2009C>T	p.Ala670Val	p.A670V	ENST00000310581	NM_198253.2	670	gCg/gTg						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66280062	66280062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	279	704	0	ENST00000273854.3:c.1627C>T	p.Arg543Cys	p.R543C	ENST00000273854	NM_004439.5	543	Cgt/Tgt						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39922141	39922141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	381	1354	1	ENST00000378444.4:c.4031C>T	p.Ala1344Val	p.A1344V	ENST00000378444	NM_001123385.1	1344	gCc/gTc						NEWRECORD																																																																									
MYCL1	4610	MSKCC	GRCh37	1	40366722	40366722	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	75	362	0	ENST00000397332.2:c.475C>G	p.Pro159Ala	p.P159A	ENST00000397332	NM_001033082.2	159	Ccg/Gcg						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65312344	65312344	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	283	686	2	ENST00000342505.4:c.1975C>A	p.Arg659Ser	p.R659S	ENST00000342505	NM_002227.2	659	Cgc/Agc						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189590764	189590764	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	351	784	0	ENST00000264731.3:c.1329C>G	p.His443Gln	p.H443Q	ENST00000264731	NM_003722.4	443	caC/caG						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55133508	55133508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	56	841	0	ENST00000257290.5:c.812T>C	p.Leu271Ser	p.L271S	ENST00000257290	NM_006206.4	271	tTg/tCg						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157502163	157502163	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	229	453	0	ENST00000346085.5:c.3196G>T	p.Glu1066Ter	p.E1066*	ENST00000346085	NM_020732.3	1066	Gag/Tag						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55370732	55370732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	113	352	0	ENST00000297316.4:c.34G>A	p.Asp12Asn	p.D12N	ENST00000297316	NM_022454.3	12	Gac/Aac						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133753823	133753823	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	346	986	0	ENST00000318560.5:c.1292A>G	p.Glu431Gly	p.E431G	ENST00000318560	NM_005157.4	431	gAa/gGa						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139405201	139405201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	207	790	1	ENST00000277541.6:c.2644G>A	p.Ala882Thr	p.A882T	ENST00000277541	NM_017617.3	882	Gca/Aca						NEWRECORD																																																																									
CCND1	595	MSKCC	GRCh37	11	69466018	69466018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	207	762	0	ENST00000227507.2:c.856A>G	p.Thr286Ala	p.T286A	ENST00000227507	NM_053056.2	286	Aca/Gca						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108235935	108235935	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs770641163		P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	91	574	1	ENST00000278616.4:c.8977C>T	p.Arg2993Ter	p.R2993*	ENST00000278616	NM_000051.3	2993	Cga/Tga						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118390432	118390432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	346	936	0	ENST00000534358.1:c.11246G>A	p.Arg3749His	p.R3749H	ENST00000534358	NM_005933.3	3749	cGt/cAt						NEWRECORD																																																																									
CDK8	1024	MSKCC	GRCh37	13	26974623	26974623	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	78	786	0	ENST00000381527.3:c.967C>T	p.Arg323Ter	p.R323*	ENST00000381527	NM_001260.1	323	Cga/Tga						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110435804	110435804	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	34	117	0	ENST00000375856.3:c.2597T>C	p.Val866Ala	p.V866A	ENST00000375856	NM_003749.2	866	gTg/gCg						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38060689	38060689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	456	1196	1	ENST00000250448.2:c.1300C>T	p.Pro434Ser	p.P434S	ENST00000250448	NM_004496.3	434	Ccc/Tcc						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99456431	99456431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	223	640	0	ENST00000268035.6:c.1748C>A	p.Ala583Asp	p.A583D	ENST00000268035	NM_000875.3	583	gCt/gAt						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	348157	348157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	42	550	0	ENST00000262320.3:c.1349G>A	p.Arg450His	p.R450H	ENST00000262320	NM_003502.3	450	cGc/cAc						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67663406	67663406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	365	803	1	ENST00000264010.4:c.1807C>T	p.Arg603Cys	p.R603C	ENST00000264010	NM_006565.3	603	Cgc/Tgc						NEWRECORD																																																																									
PPM1D	8493	MSKCC	GRCh37	17	58740809	58740809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	531	1330	1	ENST00000305921.3:c.1714C>T	p.Arg572Ter	p.R572*	ENST00000305921	NM_003620.3	572	Cga/Tga						NEWRECORD																																																																									
RPTOR	57521	MSKCC	GRCh37	17	78681704	78681704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	239	789	2	ENST00000306801.3:c.412C>T	p.Arg138Cys	p.R138C	ENST00000306801	NM_020761.2	138	Cgt/Tgt						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5222796	5222796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	72	305	0	ENST00000357368.4:c.3007G>A	p.Asp1003Asn	p.D1003N	ENST00000357368	NM_002850.3	1003	Gac/Aac						NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50909464	50909464	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199576140		P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	83	1249	5	ENST00000440232.2:c.1268G>A	p.Arg423His	p.R423H	ENST00000440232	NM_002691.3	423	cGt/cAt						NEWRECORD																																																																									
ARAF	369	MSKCC	GRCh37	X	47424679	47424679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	300	1347	0	ENST00000377045.4:c.487G>A	p.Gly163Arg	p.G163R	ENST00000377045	NM_001654.4	163	Gga/Aga						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53224537	53224537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	330	1214	5	ENST00000375401.3:c.3176G>A	p.Arg1059Gln	p.R1059Q	ENST00000375401	NM_004187.3	1059	cGg/cAg						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76875889	76875889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1069	89	1209	0	ENST00000373344.5:c.5246C>T	p.Thr1749Ile	p.T1749I	ENST00000373344	NM_000489.3	1749	aCa/aTa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187541434	187541435	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	255	781	0	ENST00000441802.2:c.6305_6306del	p.Tyr2102CysfsTer23	p.Y2102Cfs*23	ENST00000441802	NM_005245.3	2102	tAT/t						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135798860	135798862	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	116	379	0	ENST00000298552.3:c.381_383del	p.Val128del	p.V128del	ENST00000298552	NM_001162426.1	127	gtTGTc/gtc						NEWRECORD																																																																									
BBC3	27113	MSKCC	GRCh37	19	47731503	47731503	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	46	87	1	ENST00000449228.1:c.289del	p.His97ThrfsTer132	p.H97Tfs*132	ENST00000449228	NM_001127240.2	97	Cac/ac						NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50905061	50905061	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	55	979	0	ENST00000440232.2:c.347delC	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	115	Ccc/cc						NEWRECORD																																																																									
MYOD1	4654	MSKCC	GRCh37	11	17741637	17741637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	87	130	0	ENST00000250003.3:c.308G>A	p.Arg103His	p.R103H	ENST00000250003	NM_002478.4	103	cGc/cAc						NEWRECORD																																																																									
CDKN2C	1031	MSKCC	GRCh37	1	51439659	51439659	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	260	511	0	ENST00000262662.1:c.224A>G	p.His75Arg	p.H75R	ENST00000262662		75	cAt/cGt						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89350416	89350416	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0013697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	570	1105	0	ENST00000301030.4:c.2534T>A	p.Leu845Ter	p.L845*	ENST00000301030	NM_001256183.1	845	tTg/tAg						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8636766	8636766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	256	398	0	ENST00000356435.5:c.143C>T	p.Thr48Met	p.T48M	ENST00000356435		48	aCg/aTg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	355	524	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0014003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	240	441	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat						NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056314	26056314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	164	487	0	ENST00000343677.2:c.343G>A	p.Glu115Lys	p.E115K	ENST00000343677	NM_005319.3	115	Gaa/Aaa						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43606672	43606672	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	483	802	2	ENST00000355710.3:c.1282del	p.Glu428LysfsTer25	p.E428Kfs*25	ENST00000355710	NM_020975.4	427	gtG/gt						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63545771	63545771	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	687	533	0	ENST00000307078.5:c.823A>T	p.Lys275Ter	p.K275*	ENST00000307078	NM_004655.3	275	Aag/Tag						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25467199	25467199	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	146	520	0	ENST00000264709.3:c.1676G>T	p.Cys559Phe	p.C559F	ENST00000264709	NM_175629.2	559	tGc/tTc						NEWRECORD																																																																									
TOP1	7150	MSKCC	GRCh37	20	39708706	39708725	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAATTTTTTTTCTCTTTAGT	CAATTTTTTTTCTCTTTAGT	-			P-0014003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	117	322	0	ENST00000361337.2:c.336-18_337del		p.X112_splice	ENST00000361337	NM_003286.2	112							NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187518056	187518056	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	489	743	0	ENST00000441802.2:c.12638A>T	p.Gln4213Leu	p.Q4213L	ENST00000441802	NM_005245.3	4213	cAg/cTg						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180053126	180053126	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	192	642	0	ENST00000261937.6:c.1243G>T	p.Glu415Ter	p.E415*	ENST00000261937	NM_182925.4	415	Gag/Tag						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9525114	9525114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	105	473	0	ENST00000353224.5:c.1771G>T	p.Ala591Ser	p.A591S	ENST00000353224	NM_177990.2	591	Gct/Tct						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0010637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	174	248	0	ENST00000397752.3:c.3028+1del		p.D1010fs	ENST00000397752	NM_000245.2	1010	Gat/at						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66361214	66361214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	97	363	0	ENST00000273854.3:c.958G>T	p.Gly320Cys	p.G320C	ENST00000273854	NM_004439.5	320	Ggc/Tgc						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68867309	68867309	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	156	424	2	ENST00000261769.5:c.2556G>T	p.Glu852Asp	p.E852D	ENST00000261769	NM_004360.3	852	gaG/gaT						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47039904	47039904	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0010637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	159	168	2	ENST00000329236.7:c.1013A>T	p.Gln338Leu	p.Q338L	ENST00000329236	NM_001204466.1	338	cAg/cTg						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116380944	116380958	+	inframe_deletion	In_Frame_Del	DEL	TTTCCAGTCCTGCAG	TTTCCAGTCCTGCAG	-			P-0010637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1079	108	496	0	ENST00000397752.3:c.1567_1581del	p.Phe523_Ser527del	p.F523_S527del	ENST00000397752	NM_000245.2	522	caTTTCCAGTCCTGCAGt/cat						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0012888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	54	459	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs878854073		P-0012888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	112	405	1	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225							NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36937194	36937194	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1587	104	1051	0	ENST00000361632.4:c.1125G>C	p.Trp375Cys	p.W375C	ENST00000361632		375	tgG/tgC						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55238870	55238870	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	77	563	0	ENST00000275493.2:c.1883G>A	p.Cys628Tyr	p.C628Y	ENST00000275493	NM_005228.3	628	tGc/tAc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55273014	55273014	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	61	491	1	ENST00000275493.2:c.3337C>T	p.Gln1113Ter	p.Q1113*	ENST00000275493	NM_005228.3	1113	Cag/Tag						NEWRECORD																																																																									
LMO1	4004	MSKCC	GRCh37	11	8246257	8246257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	55	467	0	ENST00000335790.3:c.377G>C	p.Gly126Ala	p.G126A	ENST00000335790	NM_002315.2	126	gGa/gCa						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21562199	21562199	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1584	101	1078	0	ENST00000382592.4:c.1720C>T	p.Gln574Ter	p.Q574*	ENST00000382592	NM_014572.2	574	Cag/Tag						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32914679	32914679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1687	105	1140	1	ENST00000380152.3:c.6187G>A	p.Gly2063Arg	p.G2063R	ENST00000380152		2063	Gga/Aga						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49050843	49050843	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	26	216	1	ENST00000267163.4:c.2527G>C	p.Glu843Gln	p.E843Q	ENST00000267163	NM_000321.2	843	Gag/Cag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	173	491	1	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc						NEWRECORD																																																																									
BMPR1A	657	MSKCC	GRCh37	10	88676911	88676911	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	60	328	0	ENST00000372037.3:c.696A>T	p.Lys232Asn	p.K232N	ENST00000372037	NM_004329.2	232	aaA/aaT						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56495627	56495627	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	120	461	0	ENST00000267101.3:c.3821del	p.Gly1274ValfsTer19	p.G1274Vfs*19	ENST00000267101	NM_001982.3	1273	Ggg/gg						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9520237	9520237	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	139	486	0	ENST00000353224.5:c.2032G>C	p.Asp678His	p.D678H	ENST00000353224	NM_177990.2	678	Gac/Cac						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47129716	47129716	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	79	499	0	ENST00000409792.3:c.5164C>G	p.Leu1722Val	p.L1722V	ENST00000409792	NM_014159.6	1722	Ctg/Gtg						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117663590	117663590	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	57	529	0	ENST00000368508.3:c.4642G>C	p.Glu1548Gln	p.E1548Q	ENST00000368508	NM_002944.2	1548	Gag/Cag						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2683	995	308	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc						NEWRECORD																																																																									
RHOA	387	MSKCC	GRCh37	3	49405953	49405953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	535	595	1	ENST00000418115.1:c.185G>A	p.Gly62Glu	p.G62E	ENST00000418115	NM_001664.2	62	gGg/gAg						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0014408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1362	464	521	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061274	38061274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	562	611	0	ENST00000250448.2:c.715G>A	p.Gly239Ser	p.G239S	ENST00000250448	NM_004496.3	239	Ggc/Agc						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134884849	134884849	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	1097	345	0	ENST00000398015.3:c.1625T>C	p.Ile542Thr	p.I542T	ENST00000398015	NM_004441.4	542	aTt/aCt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128203	112128206	+	frameshift_variant	Frame_Shift_Del	DEL	CAGT	CAGT	-			P-0014408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	370	460	0	ENST00000257430.4:c.707_710del	p.Gln236ProfsTer56	p.Q236Pfs*56	ENST00000257430	NM_000038.5	236	CAGTcc/cc						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115729	8115729	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	140	415	1	ENST00000346208.3:c.1075G>T	p.Glu359Ter	p.E359*	ENST00000346208		359	Gaa/Taa						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38060779	38060779	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1684	178	849	0	ENST00000250448.2:c.1210A>G	p.Asn404Asp	p.N404D	ENST00000250448	NM_004496.3	404	Aac/Gac						NEWRECORD																																																																									
NBN	4683	MSKCC	GRCh37	8	90982767	90982767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	145	309	2	ENST00000265433.3:c.721G>A	p.Ala241Thr	p.A241T	ENST00000265433	NM_002485.4	241	Gca/Aca						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242469	55242470	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC	rs397517096		P-0014996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	122	642	0	ENST00000275493.2:c.2239_2240delinsCC	p.Leu747Pro	p.L747P	ENST00000275493	NM_005228.3	747	TTa/CCa						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120510202	120510202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	17	509	2	ENST00000256646.2:c.1307C>T	p.Thr436Met	p.T436M	ENST00000256646	NM_024408.3	436	aCg/aTg						NEWRECORD																																																																									
SH2B3	10019	MSKCC	GRCh37	12	111886081	111886081	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199803113		P-0010830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	375	1213	0	ENST00000341259.2:c.1703T>C	p.Ile568Thr	p.I568T	ENST00000341259	NM_005475.2	568	aTa/aCa						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3900489	3900489	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	302	851	0	ENST00000262367.5:c.607C>T	p.Gln203Ter	p.Q203*	ENST00000262367	NM_004380.2	203	Caa/Taa						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76845366	76845366	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	177	708	0	ENST00000373344.5:c.6155A>T	p.Asp2052Val	p.D2052V	ENST00000373344	NM_000489.3	2052	gAt/gTt						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64575106	64575107	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0010830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	276	528	0	ENST00000337652.1:c.715_716del	p.Met239GlyfsTer14	p.M239Gfs*14	ENST00000337652	NM_130803.2	239	ATg/g						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0013051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	325	700	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25966966	25966966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1041	154	644	0	ENST00000435504.4:c.2240G>T	p.Gly747Val	p.G747V	ENST00000435504		747	gGt/gTt						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99155411	99155411	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747244472		P-0013051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	151	602	3	ENST00000074304.5:c.637G>A	p.Ala213Thr	p.A213T	ENST00000074304	NM_001134224.1	213	Gct/Act						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15288529	15288529	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	77	153	0	ENST00000263388.2:c.4210G>C	p.Glu1404Gln	p.E1404Q	ENST00000263388	NM_000435.2	1404	Gag/Cag						NEWRECORD																																																																									
CEBPA	1050	MSKCC	GRCh37	19	33792285	33792285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1188	150	655	1	ENST00000498907.2:c.1036C>T	p.Pro346Ser	p.P346S	ENST00000498907	NM_004364.3	346	Cca/Tca						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0010854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	99	567	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0010854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	69	681	0	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380264	25380264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	115	578	0	ENST00000256078.4:c.194G>A	p.Ser65Asn	p.S65N	ENST00000256078	NM_033360.2	65	aGt/aAt						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41245846	41245846	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	52	535	0	ENST00000357654.3:c.1702C>A	p.Pro568Thr	p.P568T	ENST00000357654	NM_007294.3	568	Cct/Act						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67589623	67589634	+	inframe_deletion	In_Frame_Del	DEL	ATATGATAGATT	ATATGATAGATT	-			P-0014598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	96	403	0	ENST00000274335.5:c.1392_1403delTAGATTATATGA	p.Asp464_Tyr467del	p.D464_Y467del	ENST00000274335		462	gaATATGATAGATTa/gaa						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49426061	49426061	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	300	748	0	ENST00000301067.7:c.12427del	p.Asp4143IlefsTer6	p.D4143Ifs*6	ENST00000301067	NM_003482.3	4143	Gat/at						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3830841	3830841	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	249	648	0	ENST00000262367.5:c.1715G>T	p.Gly572Val	p.G572V	ENST00000262367	NM_004380.2	572	gGa/gTa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	359	415	0	ENST00000269305.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTc/aCc						NEWRECORD																																																																									
PNRC1	10957	MSKCC	GRCh37	6	89790728	89790728	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2231267		P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	406	491	1	ENST00000336032.3:c.115C>T	p.Pro39Ser	p.P39S	ENST00000336032	NM_006813.2	39	Ccg/Tcg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48584787	48584787	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	489	599	0	ENST00000342988.3:c.865C>T	p.Gln289Ter	p.Q289*	ENST00000342988	NM_005359.5	289	Cag/Tag						NEWRECORD																																																																									
DNAJB1	3337	MSKCC	GRCh37	19	14628978	14628978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	359	596	0	ENST00000254322.2:c.184G>A	p.Glu62Lys	p.E62K	ENST00000254322	NM_006145.1	62	Gag/Aag						NEWRECORD																																																																									
MLH1	4292	MSKCC	GRCh37	3	37067386	37067386	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	381	392	0	ENST00000231790.2:c.1297G>C	p.Glu433Gln	p.E433Q	ENST00000231790	NM_000249.3	433	Gaa/Caa						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12028618	12028618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	374	393	0	ENST00000353533.5:c.821G>T	p.Arg274Ile	p.R274I	ENST00000353533	NM_003010.3	274	aGa/aTa						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68771344	68771344	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	192	209	0	ENST00000261769.5:c.26C>A	p.Ser9Ter	p.S9*	ENST00000261769	NM_004360.3	9	tCg/tAg						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29654516	29654516	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	426	417	0	ENST00000358273.4:c.5269-1G>C		p.X1757_splice	ENST00000358273	NM_001042492.2	1757							NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056443	26056443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	229	210	0	ENST00000343677.2:c.214G>A	p.Asp72Asn	p.D72N	ENST00000343677	NM_005319.3	72	Gat/Aat						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11169787	11169787	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	309	317	0	ENST00000361445.4:c.7367-1G>C		p.X2456_splice	ENST00000361445	NM_004958.3	2456							NEWRECORD																																																																									
PMS1	5378	MSKCC	GRCh37	2	190728671	190728671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	574	458	0	ENST00000441310.2:c.2059G>A	p.Glu687Lys	p.E687K	ENST00000441310	NM_000534.4	687	Gaa/Aaa						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143033725	143033725	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	488	490	0	ENST00000262992.4:c.2246G>C	p.Gly749Ala	p.G749A	ENST00000262992	NM_001101669.1	749	gGa/gCa						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38962679	38962679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	322	292	0	ENST00000357387.3:c.1576G>A	p.Glu526Lys	p.E526K	ENST00000357387	NM_152756.3	526	Gaa/Aaa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112177511	112177511	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	344	299	0	ENST00000257430.4:c.6220G>T	p.Glu2074Ter	p.E2074*	ENST00000257430	NM_000038.5	2074	Gaa/Taa						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32163305	32163305	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	430	554	0	ENST00000375023.3:c.5921C>G	p.Pro1974Arg	p.P1974R	ENST00000375023	NM_004557.3	1974	cCg/cGg						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157099858	157099858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	290	337	0	ENST00000346085.5:c.795G>A	p.Met265Ile	p.M265I	ENST00000346085	NM_020732.3	265	atG/atA						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145738515	145738515	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	155	179	0	ENST00000428558.2:c.2470G>C	p.Asp824His	p.D824H	ENST00000428558	NM_004260.3	824	Gac/Cac						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108160508	108160508	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	339	300	0	ENST00000278616.4:c.4416G>C	p.Leu1472Phe	p.L1472F	ENST00000278616	NM_000051.3	1472	ttG/ttC						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49445893	49445893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	388	597	0	ENST00000301067.7:c.1573G>A	p.Glu525Lys	p.E525K	ENST00000301067	NM_003482.3	525	Gag/Aag						NEWRECORD																																																																									
MDM2	4193	MSKCC	GRCh37	12	69233390	69233390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	405	371	0	ENST00000462284.1:c.1255G>A	p.Glu419Lys	p.E419K	ENST00000462284	NM_002392.5	419	Gag/Aag						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32945141	32945141	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	391	454	0	ENST00000380152.3:c.8536G>C	p.Glu2846Gln	p.E2846Q	ENST00000380152		2846	Gag/Cag						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29527452	29527452	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	283	267	0	ENST00000358273.4:c.901G>C	p.Asp301His	p.D301H	ENST00000358273	NM_001042492.2	301	Gac/Cac						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37872145	37872145	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142456637		P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			5422	340	445	0	ENST00000269571.5:c.1466C>T	p.Pro489Leu	p.P489L	ENST00000269571		489	cCg/cTg						NEWRECORD																																																																									
RPTOR	57521	MSKCC	GRCh37	17	78865559	78865559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	310	437	0	ENST00000306801.3:c.2023G>C	p.Glu675Gln	p.E675Q	ENST00000306801	NM_020761.2	675	Gaa/Caa						NEWRECORD																																																																									
YES1	7525	MSKCC	GRCh37	18	724609	724609	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	286	302	0	ENST00000314574.4:c.1447G>C	p.Glu483Gln	p.E483Q	ENST00000314574	NM_005433.3	483	Gaa/Caa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913283		P-0014511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	43	459	0	ENST00000263967.3:c.3129G>T	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atT						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88678626	88678626	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0014511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	51	328	0	ENST00000360948.2:c.910C>A	p.Pro304Thr	p.P304T	ENST00000360948	NM_001012338.2	304	Ccc/Acc						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106509915	106509915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	165	566	0	ENST00000359195.3:c.1909G>T	p.Asp637Tyr	p.D637Y	ENST00000359195	NM_002649.2	637	Gat/Tat						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259517	+	missense_variant	Missense_Mutation	ONP	TGG	TGG	GGT			P-0014511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1389	370	621	0	ENST00000275493.2:c.2573_2575delinsGGT	p.Leu858_Ala859delinsArgSer	p.L858_A859delinsRS	ENST00000275493	NM_005228.3	858	cTGGcc/cGGTcc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0014967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	22	495	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	120	327	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	153	392	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag						NEWRECORD																																																																									
CD79A	973	MSKCC	GRCh37	19	42383144	42383144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	190	674	0	ENST00000221972.3:c.164C>T	p.Pro55Leu	p.P55L	ENST00000221972	NM_021601.3	55	cCg/cTg						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162741877	162741877	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	94	284	0	ENST00000367921.3:c.1568A>T	p.Glu523Val	p.E523V	ENST00000367921	NM_006182.2	523	gAg/gTg						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29754928	29754928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	69	222	0	ENST00000389048.3:c.1007C>A	p.Pro336Gln	p.P336Q	ENST00000389048	NM_004304.4	336	cCg/cAg						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198265591	198265591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	96	347	0	ENST00000335508.6:c.2566G>A	p.Asp856Asn	p.D856N	ENST00000335508	NM_012433.2	856	Gat/Aat						NEWRECORD																																																																									
VHL	7428	MSKCC	GRCh37	3	10183634	10183634	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	73	365	3	ENST00000256474.2:c.103G>T	p.Ala35Ser	p.A35S	ENST00000256474	NM_000551.3	35	Gcc/Tcc						NEWRECORD																																																																									
VHL	7428	MSKCC	GRCh37	3	10183848	10183848	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	34	162	0	ENST00000256474.2:c.317G>T	p.Gly106Val	p.G106V	ENST00000256474	NM_000551.3	106	gGc/gTc						NEWRECORD																																																																									
RHOA	387	MSKCC	GRCh37	3	49397658	49397658	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	130	341	0	ENST00000418115.1:c.566G>T	p.Gly189Val	p.G189V	ENST00000418115	NM_001664.2	189	gGg/gTg						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189586490	189586490	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	74	231	0	ENST00000264731.3:c.1114G>C	p.Asp372His	p.D372H	ENST00000264731	NM_003722.4	372	Gat/Cat						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143043306	143043306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	122	404	0	ENST00000262992.4:c.2110G>T	p.Val704Leu	p.V704L	ENST00000262992	NM_001101669.1	704	Gtg/Ttg						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143129590	143129590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	65	287	2	ENST00000262992.4:c.1060C>A	p.Pro354Thr	p.P354T	ENST00000262992	NM_001101669.1	354	Cct/Act						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187630140	187630140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	106	326	0	ENST00000441802.2:c.842G>T	p.Cys281Phe	p.C281F	ENST00000441802	NM_005245.3	281	tGc/tTc						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2946370	2946370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	246	473	0	ENST00000396946.4:c.3367G>T	p.Asp1123Tyr	p.D1123Y	ENST00000396946	NM_032415.4	1123	Gac/Tac						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151874206	151874206	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	69	327	0	ENST00000262189.6:c.8332G>C	p.Asp2778His	p.D2778H	ENST00000262189	NM_170606.2	2778	Gac/Cac						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55372193	55372193	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	10	99	0	ENST00000297316.4:c.883G>C	p.Val295Leu	p.V295L	ENST00000297316	NM_022454.3	295	Gtg/Ctg						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139399309	139399309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	96	362	0	ENST00000277541.6:c.4834G>T	p.Gly1612Cys	p.G1612C	ENST00000277541	NM_017617.3	1612	Ggc/Tgc						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70451458	70451458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	154	488	0	ENST00000373644.4:c.6298G>A	p.Glu2100Lys	p.E2100K	ENST00000373644	NM_030625.2	2100	Gaa/Aaa						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	420113	420113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	186	450	0	ENST00000399788.2:c.3154G>A	p.Ala1052Thr	p.A1052T	ENST00000399788	NM_001042603.1	1052	Gca/Aca						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57860022	57860022	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	136	521	0	ENST00000228682.2:c.763-1G>T		p.X255_splice	ENST00000228682	NM_005269.2	255							NEWRECORD																																																																									
NKX2-1	7080	MSKCC	GRCh37	14	36986871	36986871	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			122	19	71	0	ENST00000354822.5:c.818G>T	p.Gly273Val	p.G273V	ENST00000354822	NM_001079668.2	273	gGg/gTg						NEWRECORD																																																																									
TSHR	7253	MSKCC	GRCh37	14	81610356	81610356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	107	393	0	ENST00000298171.2:c.1954C>A	p.Pro652Thr	p.P652T	ENST00000298171	NM_000369.2	652	Cct/Act						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29546102	29546102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	123	318	0	ENST00000358273.4:c.1607C>T	p.Ser536Leu	p.S536L	ENST00000358273	NM_001042492.2	536	tCa/tTa						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29560085	29560085	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	132	350	0	ENST00000358273.4:c.3562C>T	p.Gln1188Ter	p.Q1188*	ENST00000358273	NM_001042492.2	1188	Caa/Taa						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29679298	29679298	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	85	353	1	ENST00000358273.4:c.7481G>T	p.Trp2494Leu	p.W2494L	ENST00000358273	NM_001042492.2	2494	tGg/tTg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575107	48575107	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	102	361	0	ENST00000342988.3:c.301T>A	p.Trp101Arg	p.W101R	ENST00000342988	NM_005359.5	101	Tgg/Agg						NEWRECORD																																																																									
AKT2	208	MSKCC	GRCh37	19	40762875	40762875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	131	402	0	ENST00000392038.2:c.133C>T	p.Pro45Ser	p.P45S	ENST00000392038	NM_001626.4	45	Cct/Tct						NEWRECORD																																																																									
AKT2	208	MSKCC	GRCh37	19	40762951	40762951	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	91	317	0	ENST00000392038.2:c.57C>G	p.Ile19Met	p.I19M	ENST00000392038	NM_001626.4	19	atC/atG						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66766213	66766213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	52	104	0	ENST00000374690.3:c.1225G>T	p.Gly409Trp	p.G409W	ENST00000374690	NM_000044.3	409	Ggg/Tgg						NEWRECORD																																																																									
SH2D1A	4068	MSKCC	GRCh37	X	123505200	123505200	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	60	82	0	ENST00000371139.4:c.347-1G>T		p.X116_splice	ENST00000371139	NM_001114937.2	116							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	501	428	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	178	529	0	ENST00000269305.4:c.772G>C	p.Glu258Gln	p.E258Q	ENST00000269305	NM_001126112.2	258	Gaa/Caa						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81946299	81946299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	233	817	1	ENST00000359376.3:c.2032G>A	p.Asp678Asn	p.D678N	ENST00000359376	NM_002661.3	678	Gac/Aac						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162746131	162746131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	139	420	0	ENST00000367921.3:c.2254C>T	p.Arg752Cys	p.R752C	ENST00000367921	NM_006182.2	752	Cgc/Tgc						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42040955	42040955	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	399	863	0	ENST00000219905.7:c.5333C>G	p.Ser1778Ter	p.S1778*	ENST00000219905	NM_001164273.1	1778	tCa/tGa						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76875958	76875961	+	frameshift_variant	Frame_Shift_Del	DEL	TTTT	TTTT	-			P-0010090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	363	762	0	ENST00000373344.5:c.5174_5177del	p.Lys1725MetfsTer10	p.K1725Mfs*10	ENST00000373344	NM_000489.3	1725	aAAAAt/at						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64577375	64577375	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	337	649	0	ENST00000337652.1:c.207del	p.Asp70ThrfsTer49	p.D70Tfs*49	ENST00000337652	NM_130803.2	69	ccC/cc						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55161344	55161344	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	221	224	0	ENST00000257290.5:c.3175T>G	p.Phe1059Val	p.F1059V	ENST00000257290	NM_006206.4	1059	Ttc/Gtc						NEWRECORD																																																																									
FANCC	2176	MSKCC	GRCh37	9	97933361	97933361	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0011321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	170	201	0	ENST00000289081.3:c.521G>A	p.Arg174Gln	p.R174Q	ENST00000289081	NM_000136.2	174	cGa/cAa						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46123697	46123697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	147	180	0	ENST00000334344.6:c.78C>A	p.Phe26Leu	p.F26L	ENST00000334344	NM_152641.2	26	ttC/ttA						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55593587	55593643	+	inframe_deletion	In_Frame_Del	DEL	CATGTATGAAGTACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTA	CATGTATGAAGTACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTA	-			P-0011321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	342	248	0	ENST00000288135.5:c.1656_1712del	p.Met552_Tyr570del	p.M552_Y570del	ENST00000288135	NM_000222.2	551	ccCATGTATGAAGTACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTAc/ccc						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8111496	8111512	+	frameshift_variant	Frame_Shift_Del	DEL	TGGAGGAGGAATGCCAA	TGGAGGAGGAATGCCAA	-			P-0011321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	252	317	1	ENST00000346208.3:c.985_1001del	p.Arg329GlyfsTer17	p.R329Gfs*17	ENST00000346208		328	TGGAGGAGGAATGCCAAt/t						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1304	64	594	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	51	461	0	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135804247	135804247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	39	390	0	ENST00000298552.3:c.13G>A	p.Ala5Thr	p.A5T	ENST00000298552	NM_001162426.1	5	Gca/Aca						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21994137	21994139	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CCT	CCT	-			P-0012834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	54	592	0	ENST00000361570.3:c.315_316+1delAGG		p.X105_splice	ENST00000361570	NM_058195.3	105							NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	177	737	0	ENST00000347630.2:c.392G>T	p.Trp131Leu	p.W131L	ENST00000347630	NM_001007230.1	131	tGg/tTg						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12043188	12043188	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	176	762	0	ENST00000353533.5:c.1073A>G	p.Tyr358Cys	p.Y358C	ENST00000353533	NM_003010.3	358	tAt/tGt						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3779626	3779626	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	95	539	0	ENST00000262367.5:c.5422T>G	p.Cys1808Gly	p.C1808G	ENST00000262367	NM_004380.2	1808	Tgc/Ggc						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	295	697	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936107	178936107	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	124	254	1	ENST00000263967.3:c.1649T>A	p.Phe550Tyr	p.F550Y	ENST00000263967	NM_006218.2	550	tTt/tAt						NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45007633	45007633	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	143	324	0	ENST00000558401.1:c.80T>C	p.Ile27Thr	p.I27T	ENST00000558401	NM_004048.2	27	aTt/aCt						NEWRECORD																																																																									
NCOA3	8202	MSKCC	GRCh37	20	46265506	46265506	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0011483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	278	664	0	ENST00000371998.3:c.2376+1delG		p.E792fs	ENST00000371998		792	gaG/ga						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27087368	27087368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	219	733	0	ENST00000324856.7:c.1942G>A	p.Asp648Asn	p.D648N	ENST00000324856	NM_006015.4	648	Gac/Aac						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89711968	89711968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	152	433	0	ENST00000371953.3:c.586C>T	p.His196Tyr	p.H196Y	ENST00000371953	NM_000314.4	196	Cac/Tac						NEWRECORD																																																																									
FGFR2	2263	MSKCC	GRCh37	10	123244999	123244999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150015885		P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	313	792	3	ENST00000358487.5:c.2105C>T	p.Ser702Leu	p.S702L	ENST00000358487	NM_000141.4	702	tCg/tTg						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46231410	46231410	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	214	542	0	ENST00000334344.6:c.1250C>G	p.Ser417Ter	p.S417*	ENST00000334344	NM_152641.2	417	tCa/tGa						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49446723	49446723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	224	533	0	ENST00000301067.7:c.1087G>A	p.Glu363Lys	p.E363K	ENST00000301067	NM_003482.3	363	Gag/Aag						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57858952	57858952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	421	1195	1	ENST00000228682.2:c.448G>A	p.Gly150Arg	p.G150R	ENST00000228682	NM_005269.2	150	Ggg/Agg						NEWRECORD																																																																									
HNF1A	6927	MSKCC	GRCh37	12	121434146	121434146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	346	911	0	ENST00000257555.6:c.1037C>T	p.Thr346Ile	p.T346I	ENST00000257555		346	aCa/aTa						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133263850	133263850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	110	172	0	ENST00000320574.5:c.52G>A	p.Glu18Lys	p.E18K	ENST00000320574	NM_006231.2	18	Gag/Aag						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49050866	49050866	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	29	336	0	ENST00000267163.4:c.2550G>C	p.Gln850His	p.Q850H	ENST00000267163	NM_000321.2	850	caG/caC						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42028585	42028585	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	460	1300	0	ENST00000219905.7:c.4123G>C	p.Glu1375Gln	p.E1375Q	ENST00000219905	NM_001164273.1	1375	Gag/Cag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	284	812	1	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11094856	11094856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	242	879	2	ENST00000344626.4:c.29G>A	p.Gly10Glu	p.G10E	ENST00000344626	NM_003072.3	10	gGa/gAa						NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209108198	209108198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	341	722	0	ENST00000345146.2:c.651G>T	p.Lys217Asn	p.K217N	ENST00000345146	NM_005896.2	217	aaG/aaT						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40827982	40827982	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	205	556	0	ENST00000373198.4:c.2446G>C	p.Glu816Gln	p.E816Q	ENST00000373198	NM_133170.3	816	Gag/Cag						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47163023	47163023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	283	672	0	ENST00000409792.3:c.3103C>T	p.His1035Tyr	p.H1035Y	ENST00000409792	NM_014159.6	1035	Cat/Tat						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47163187	47163187	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	279	627	0	ENST00000409792.3:c.2939C>G	p.Ser980Cys	p.S980C	ENST00000409792	NM_014159.6	980	tCt/tGt						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47163512	47163512	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	171	502	0	ENST00000409792.3:c.2614C>T	p.Gln872Ter	p.Q872*	ENST00000409792	NM_014159.6	872	Caa/Taa						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134911606	134911606	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767340477		P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	220	608	1	ENST00000398015.3:c.2071C>T	p.Arg691Trp	p.R691W	ENST00000398015	NM_004441.4	691	Cgg/Tgg						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142281322	142281322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	50	510	0	ENST00000350721.4:c.922G>A	p.Glu308Lys	p.E308K	ENST00000350721	NM_001184.3	308	Gaa/Aaa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178928093	178928093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	455	577	0	ENST00000263967.3:c.1371C>A	p.Asn457Lys	p.N457K	ENST00000263967	NM_006218.2	457	aaC/aaA						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	179	272	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66231728	66231728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	285	698	0	ENST00000273854.3:c.1972G>A	p.Asp658Asn	p.D658N	ENST00000273854	NM_004439.5	658	Gat/Aat						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112176318	112176318	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs143674116		P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	263	588	0	ENST00000257430.4:c.5027G>C	p.Arg1676Thr	p.R1676T	ENST00000257430	NM_000038.5	1676	aGa/aCa						NEWRECORD																																																																									
HIST1H3I	8354	MSKCC	GRCh37	6	27839850	27839850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1260	551	1544	0	ENST00000328488.2:c.244G>A	p.Asp82Asn	p.D82N	ENST00000328488	NM_003533.2	82	Gat/Aat						NEWRECORD																																																																									
CDKN1A	1026	MSKCC	GRCh37	6	36652129	36652129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34916193		P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	187	495	1	ENST00000244741.5:c.251G>A	p.Arg84Gln	p.R84Q	ENST00000244741	NM_000389.4	84	cGa/cAa						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117710759	117710759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	284	760	1	ENST00000368508.3:c.1513G>A	p.Glu505Lys	p.E505K	ENST00000368508	NM_002944.2	505	Gaa/Aaa						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2962337	2962337	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1185	132	811	0	ENST00000396946.4:c.2200G>C	p.Glu734Gln	p.E734Q	ENST00000396946	NM_032415.4	734	Gag/Cag						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98231233	98231233	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62637629		P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	247	599	0	ENST00000331920.6:c.2050G>A	p.Glu684Lys	p.E684K	ENST00000331920	NM_000264.3	684	Gag/Aag						NEWRECORD																																																																									
TRAF2	7186	MSKCC	GRCh37	9	139814826	139814826	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	381	1099	0	ENST00000247668.2:c.819G>C	p.Glu273Asp	p.E273D	ENST00000247668	NM_021138.3	273	gaG/gaC						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39921430	39921430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	65	659	0	ENST00000378444.4:c.4390G>A	p.Glu1464Lys	p.E1464K	ENST00000378444	NM_001123385.1	1464	Gag/Aag						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76937335	76937335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	241	670	0	ENST00000373344.5:c.3413G>A	p.Arg1138Lys	p.R1138K	ENST00000373344	NM_000489.3	1138	aGa/aAa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1197	68	563	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0014805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	63	465	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378564	25378564	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	58	480	0	ENST00000256078.4:c.434C>A	p.Ser145Ter	p.S145*	ENST00000256078	NM_033360.2	145	tCa/tAa						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55130004	55130004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	75	685	0	ENST00000257290.5:c.538G>A	p.Gly180Arg	p.G180R	ENST00000257290	NM_006206.4	180	Ggg/Agg						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38950648	38950648	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776074870		P-0013843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	9	1007	2	ENST00000357387.3:c.3302C>T	p.Ser1101Leu	p.S1101L	ENST00000357387	NM_152756.3	1101	tCg/tTg						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46231379	46231379	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	47	518	0	ENST00000334344.6:c.1219C>G	p.Leu407Val	p.L407V	ENST00000334344	NM_152641.2	407	Ctc/Gtc						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2223348	2223349	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0013843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	132	1096	0	ENST00000398665.3:c.3459_3460delinsT	p.Pro1154LeufsTer19	p.P1154Lfs*19	ENST00000398665	NM_032482.2	1153	tcCCct/tcTct						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8497259	8497259	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	41	411	0	ENST00000356435.5:c.2332G>T	p.Asp778Tyr	p.D778Y	ENST00000356435		778	Gat/Tat						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63410226	63410226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	22	329	0	ENST00000330258.3:c.2941G>T	p.Asp981Tyr	p.D981Y	ENST00000330258	NM_152424.3	981	Gac/Tac						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	146	686	1	ENST00000349310.3:c.155T>A	p.Leu52His	p.L52H	ENST00000349310	NM_001014432.1	52	cTc/cAc						NEWRECORD																																																																									
ERF	2077	MSKCC	GRCh37	19	42753457	42753457	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	180	971	0	ENST00000222329.4:c.807del	p.Met270Ter	p.M270*	ENST00000222329	NM_006494.2	269	ccC/cc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	451	472	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	467	435	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27102137	27102137	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	155	582	0	ENST00000324856.7:c.5063T>G	p.Leu1688Ter	p.L1688*	ENST00000324856	NM_006015.4	1688	tTa/tGa						NEWRECORD																																																																									
STK40	83931	MSKCC	GRCh37	1	36820839	36820839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	88	291	1	ENST00000373129.3:c.538G>A	p.Asp180Asn	p.D180N	ENST00000373129	NM_032017.1	180	Gac/Aac						NEWRECORD																																																																									
FH	2271	MSKCC	GRCh37	1	241682895	241682895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	85	334	0	ENST00000366560.3:c.128G>A	p.Arg43Gln	p.R43Q	ENST00000366560	NM_000143.3	43	cGa/cAa						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212589826	212589826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	50	269	0	ENST00000342788.4:c.716C>T	p.Ser239Leu	p.S239L	ENST00000342788	NM_005235.2	239	tCa/tTa						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52643415	52643415	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	184	762	0	ENST00000394830.3:c.2481G>C	p.Lys827Asn	p.K827N	ENST00000394830	NM_018313.4	827	aaG/aaC						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106157812	106157812	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	61	315	0	ENST00000380013.4:c.2713G>C	p.Asp905His	p.D905H	ENST00000380013	NM_001127208.2	905	Gat/Cat						NEWRECORD																																																																									
HIST1H3I	8354	MSKCC	GRCh37	6	27839716	27839716	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1763	620	1569	0	ENST00000328488.2:c.378G>C	p.Gln126His	p.Q126H	ENST00000328488	NM_003533.2	126	caG/caC						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87570406	87570406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1133	75	659	1	ENST00000277120.3:c.2146G>A	p.Asp716Asn	p.D716N	ENST00000277120		716	Gac/Aac						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133710877	133710877	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	183	730	0	ENST00000318560.5:c.44A>T	p.Lys15Met	p.K15M	ENST00000318560	NM_005157.4	15	aAg/aTg						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139402574	139402574	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	103	264	0	ENST00000277541.6:c.3343C>A	p.Leu1115Met	p.L1115M	ENST00000277541	NM_017617.3	1115	Ctg/Atg						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70333087	70333087	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	163	610	0	ENST00000373644.4:c.992T>G	p.Leu331Trp	p.L331W	ENST00000373644	NM_030625.2	331	tTg/tGg						NEWRECORD																																																																									
CBL	867	MSKCC	GRCh37	11	119145569	119145569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1234	152	603	0	ENST00000264033.4:c.775A>G	p.Asn259Asp	p.N259D	ENST00000264033	NM_005188.3	259	Aac/Gac						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29527439	29527439	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	46	316	0	ENST00000358273.4:c.889-1G>A		p.X297_splice	ENST00000358273	NM_001042492.2	297							NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41243830	41243830	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	77	368	0	ENST00000357654.3:c.3718C>G	p.Gln1240Glu	p.Q1240E	ENST00000357654	NM_007294.3	1240	Cag/Gag						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42797200	42797200	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	288	222	0	ENST00000575354.2:c.3562C>G	p.Pro1188Ala	p.P1188A	ENST00000575354	NM_015125.3	1188	Ccc/Gcc						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47038867	47038867	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	42	68	0	ENST00000329236.7:c.643G>T	p.Glu215Ter	p.E215*	ENST00000329236	NM_001204466.1	215	Gag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0012602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	241	490	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0012602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	1908	463	1	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936096	178936096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	138	268	0	ENST00000263967.3:c.1638G>C	p.Gln546His	p.Q546H	ENST00000263967	NM_006218.2	546	caG/caC						NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209104698	209104698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	99	499	0	ENST00000345146.2:c.880G>A	p.Val294Met	p.V294M	ENST00000345146	NM_005896.2	294	Gtg/Atg						NEWRECORD																																																																									
HIST1H3I	8354	MSKCC	GRCh37	6	27839847	27839847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	228	1455	2	ENST00000328488.2:c.247C>A	p.Leu83Met	p.L83M	ENST00000328488	NM_003533.2	83	Ctg/Atg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0012820-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	49	221	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56178169	56178169	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012820-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	182	618	1	ENST00000399503.3:c.3142C>T	p.Gln1048Ter	p.Q1048*	ENST00000399503	NM_005921.1	1048	Cag/Tag						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72991524	72991524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012820-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	255	1014	0	ENST00000268489.5:c.2521C>T	p.Gln841Ter	p.Q841*	ENST00000268489	NM_006885.3	841	Cag/Tag						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72992393	72992393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012820-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	198	923	1	ENST00000268489.5:c.1652G>T	p.Ser551Ile	p.S551I	ENST00000268489	NM_006885.3	551	aGt/aTt						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72993296	72993296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012820-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	182	917	0	ENST00000268489.5:c.749C>A	p.Ser250Tyr	p.S250Y	ENST00000268489	NM_006885.3	250	tCt/tAt						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56183254	56183254	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012820-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	115	458	2	ENST00000399503.3:c.4167del	p.Phe1389LeufsTer33	p.F1389Lfs*33	ENST00000399503	NM_005921.1	1388	gaT/ga						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68863589	68863589	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012820-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	176	689	0	ENST00000261769.5:c.2329del	p.Asp777ThrfsTer6	p.D777Tfs*6	ENST00000261769	NM_004360.3	776	ctG/ct						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	100	343	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0012075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	82	342	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt						NEWRECORD																																																																									
KLF4	9314	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1280	129	633	0	ENST00000374672.4:c.1225A>C	p.Lys409Gln	p.K409Q	ENST00000374672	NM_004235.4	409	Aag/Cag						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0010177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	85	465	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604656	48604656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	62	376	0	ENST00000342988.3:c.1478A>G	p.Asp493Gly	p.D493G	ENST00000342988	NM_005359.5	493	gAt/gGt						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46246177	46246177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	19	512	0	ENST00000334344.6:c.4271G>A	p.Gly1424Asp	p.G1424D	ENST00000334344	NM_152641.2	1424	gGt/gAt						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12028660	12028660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			44	54	611	1	ENST00000353533.5:c.863C>T	p.Ser288Phe	p.S288F	ENST00000353533	NM_003010.3	288	tCt/tTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7573987	7573987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	46	657	1	ENST00000269305.4:c.1040C>A	p.Ala347Asp	p.A347D	ENST00000269305	NM_001126112.2	347	gCc/gAc						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	30143351	30143351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	71	348	0	ENST00000389048.3:c.175G>A	p.Val59Met	p.V59M	ENST00000389048	NM_004304.4	59	Gtg/Atg						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56111509	56111509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	43	18	0	ENST00000399503.3:c.109C>G	p.Pro37Ala	p.P37A	ENST00000399503	NM_005921.1	37	Ccc/Gcc						NEWRECORD																																																																									
RFWD2	64326	MSKCC	GRCh37	1	175956125	175956125	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	137	430	0	ENST00000367669.3:c.2087C>G	p.Thr696Arg	p.T696R	ENST00000367669	NM_022457.5	696	aCa/aGa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574006	7574013	+	frameshift_variant	Frame_Shift_Del	DEL	ACATCTCG	ACATCTCG	-			P-0014455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	559	496	0	ENST00000269305.4:c.1014_1021del	p.Glu339ProfsTer5	p.E339Pfs*5	ENST00000269305	NM_001126112.2	338	ttCGAGATGTtc/tttc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	222	479	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
MPL	4352	MSKCC	GRCh37	1	43805058	43805058	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	159	819	0	ENST00000372470.3:c.508C>A	p.Arg170Ser	p.R170S	ENST00000372470	NM_005373.2	170	Cgc/Agc						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142238593	142238593	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	111	596	1	ENST00000350721.4:c.4300G>T	p.Glu1434Ter	p.E1434*	ENST00000350721	NM_001184.3	1434	Gag/Tag						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187557791	187557791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	122	630	0	ENST00000441802.2:c.3920G>T	p.Gly1307Val	p.G1307V	ENST00000441802	NM_005245.3	1307	gGa/gTa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151856072	151856072	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1284	142	729	0	ENST00000262189.6:c.11546A>T	p.Gln3849Leu	p.Q3849L	ENST00000262189	NM_170606.2	3849	cAg/cTg						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8097644	8097644	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	65	320	0	ENST00000346208.3:c.26G>C	p.Arg9Pro	p.R9P	ENST00000346208		9	cGc/cCc						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28608537	28608537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	80	442	0	ENST00000241453.7:c.1605C>A	p.Phe535Leu	p.F535L	ENST00000241453	NM_004119.2	535	ttC/ttA						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15281155	15281155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	145	765	0	ENST00000263388.2:c.5101G>T	p.Ala1701Ser	p.A1701S	ENST00000263388	NM_000435.2	1701	Gcg/Tcg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40790013	40790013	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	113	578	1	ENST00000373198.4:c.2718C>A	p.Tyr906Ter	p.Y906*	ENST00000373198	NM_133170.3	906	taC/taA						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70356231	70356231	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	182	407	0	ENST00000374080.3:c.5126G>C	p.Arg1709Pro	p.R1709P	ENST00000374080		1709	cGa/cCa						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67473615	67473616	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0013004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	111	635	0	ENST00000327367.4:c.695_696delinsTT	p.Trp232Phe	p.W232F	ENST00000327367	NM_005902.3	232	tGG/tTT						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115114276	115114276	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0010427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	227	300	0	ENST00000257566.3:c.942-1G>C		p.X314_splice	ENST00000257566	NM_016569.3	314							NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112176710	112176710	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	66	365	0	ENST00000257430.4:c.5419G>C	p.Asp1807His	p.D1807H	ENST00000257430	NM_000038.5	1807	Gac/Cac						NEWRECORD																																																																									
HIST1H2BD	3017	MSKCC	GRCh37	6	26158633	26158633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	11	81	0	ENST00000289316.2:c.236C>T	p.Ser79Phe	p.S79F	ENST00000289316	NM_138720.2	79	tCc/tTc						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53246347	53246347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	446	750	1	ENST00000375401.3:c.635G>A	p.Arg212Gln	p.R212Q	ENST00000375401	NM_004187.3	212	cGg/cAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0013037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	175	346	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0013037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	185	534	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0013037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	240	609	1	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143033806	143033806	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	234	448	0	ENST00000262992.4:c.2165C>G	p.Pro722Arg	p.P722R	ENST00000262992	NM_001101669.1	722	cCa/cGa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187521300	187521300	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	313	866	1	ENST00000441802.2:c.11855T>C	p.Phe3952Ser	p.F3952S	ENST00000441802	NM_005245.3	3952	tTt/tCt						NEWRECORD																																																																									
PNRC1	10957	MSKCC	GRCh37	6	89791122	89791122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			32	35	72	1	ENST00000336032.3:c.509C>T	p.Ala170Val	p.A170V	ENST00000336032	NM_006813.2	170	gCg/gTg						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70120247	70120247	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	499	919	1	ENST00000245479.2:c.1249C>T	p.Gln417Ter	p.Q417*	ENST00000245479	NM_000346.3	417	Cag/Tag						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42798975	42798975	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	263	722	0	ENST00000575354.2:c.4460-1G>T		p.X1487_splice	ENST00000575354	NM_015125.3	1487							NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100630235	100630235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	49	414	0	ENST00000308731.7:c.38G>A	p.Arg13Gln	p.R13Q	ENST00000308731	NM_000061.2	13	cGa/cAa						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32163277	32163277	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	340	983	1	ENST00000375023.3:c.5949del	p.Asp1984ThrfsTer12	p.D1984Tfs*12	ENST00000375023	NM_004557.3	1983	ctT/ct						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	22	576	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
SDHC	6391	MSKCC	GRCh37	1	161293439	161293439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	53	423	0	ENST00000367975.2:c.56G>T	p.Ser19Ile	p.S19I	ENST00000367975	NM_003001.3	19	aGc/aTc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	140	171	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178096493	178096493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	321	391	0	ENST00000397062.3:c.838G>T	p.Asp280Tyr	p.D280Y	ENST00000397062	NM_006164.4	280	Gat/Tat						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717715	89717715	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0010720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	244	262	1	ENST00000371953.3:c.740T>A	p.Leu247Ter	p.L247*	ENST00000371953	NM_000314.4	247	tTa/tAa						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0011186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	174	253	1	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0011186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	572	222	0	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120479949	120479949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1165	224	286	0	ENST00000256646.2:c.3478C>T	p.His1160Tyr	p.H1160Y	ENST00000256646	NM_024408.3	1160	Cac/Tac						NEWRECORD																																																																									
CTLA4	1493	MSKCC	GRCh37	2	204737508	204737508	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	154	207	0	ENST00000302823.3:c.645T>A	p.Phe215Leu	p.F215L	ENST00000302823	NM_005214.4	215	ttT/ttA						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108213964	108213964	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	249	173	0	ENST00000278616.4:c.8284C>T	p.Gln2762Ter	p.Q2762*	ENST00000278616	NM_000051.3	2762	Cag/Tag						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63531745	63531745	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0011186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1657	240	308	0	ENST00000307078.5:c.2236G>C	p.Asp746His	p.D746H	ENST00000307078	NM_004655.3	746	Gat/Cat						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600329	10600329	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	809	307	2	ENST00000171111.5:c.1526G>C	p.Gly509Ala	p.G509A	ENST00000171111	NM_203500.1	509	gGg/gCg						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53231036	53231036	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0011186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	494	159	0	ENST00000375401.3:c.1866G>T	p.Trp622Cys	p.W622C	ENST00000375401	NM_004187.3	622	tgG/tgT						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220613	1220615	+	frameshift_variant	Frame_Shift_Del	DEL	CGG	CGG	TT			P-0011186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	726	341	1	ENST00000326873.7:c.631_633delinsTT	p.Arg211LeufsTer76	p.R211Lfs*76	ENST00000326873	NM_000455.4	211	CGG/TT						NEWRECORD																																																																									
MYD88	4615	MSKCC	GRCh37	3	38182641	38182641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	32	366	2	ENST00000396334.3:c.794T>C	p.Leu265Pro	p.L265P	ENST00000396334	NM_002468.4	265	cTg/cCg						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156849823	156849823	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	86	578	0	ENST00000524377.1:c.2079G>C	p.Trp693Cys	p.W693C	ENST00000524377	NM_002529.3	693	tgG/tgC						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	169	952	0	ENST00000269305.4:c.638G>C	p.Arg213Pro	p.R213P	ENST00000269305	NM_001126112.2	213	cGa/cCa						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37871592	37871592	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1179	88	1042	1	ENST00000269571.5:c.1202A>T	p.Glu401Val	p.E401V	ENST00000269571		401	gAg/gTg						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117662464	117662464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	102	557	1	ENST00000368508.3:c.4913G>T	p.Cys1638Phe	p.C1638F	ENST00000368508	NM_002944.2	1638	tGc/tTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014008-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	54	639	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86649005	86649005	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014008-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	44	536	1	ENST00000274376.6:c.1285G>T	p.Glu429Ter	p.E429*	ENST00000274376	NM_002890.2	429	Gaa/Taa						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189586419	189586419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014008-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	49	321	0	ENST00000264731.3:c.1043C>T	p.Pro348Leu	p.P348L	ENST00000264731	NM_003722.4	348	cCa/cTa						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0014008-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	13	210	0	ENST00000304494.5:c.151-1G>C		p.X51_splice	ENST00000304494	NM_000077.4	51							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0013762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	209	679	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg						NEWRECORD																																																																									
CEBPA	1050	MSKCC	GRCh37	19	33793030	33793030	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	64	189	1	ENST00000498907.2:c.291del	p.Thr98ArgfsTer62	p.T98Rfs*62	ENST00000498907	NM_004364.3	97	ccC/cc						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56160759	56160759	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0013762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	126	440	0	ENST00000399503.3:c.1033C>T	p.Gln345Ter	p.Q345*	ENST00000399503	NM_005921.1	345	Cag/Tag						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56176572	56176572	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	109	384	0	ENST00000399503.3:c.2122G>T	p.Glu708Ter	p.E708*	ENST00000399503	NM_005921.1	708	Gaa/Taa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	132	635	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0013779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	60	312	0	ENST00000412916.2:c.165+1G>T		p.X55_splice	ENST00000412916		55							NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64573142	64573142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	120	627	0	ENST00000337652.1:c.1165G>T	p.Glu389Ter	p.E389*	ENST00000337652	NM_130803.2	389	Gag/Tag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0010793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1624	287	471	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0010793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	874	434	2	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49033905	49033905	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	392	462	1	ENST00000267163.4:c.2042G>A	p.Trp681Ter	p.W681*	ENST00000267163	NM_000321.2	681	tGg/tAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0010793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	311	404	1	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331							NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209104681	209104681	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	118	461	0	ENST00000345146.2:c.897T>A	p.Asp299Glu	p.D299E	ENST00000345146	NM_005896.2	299	gaT/gaA						NEWRECORD																																																																									
MST1R	4486	MSKCC	GRCh37	3	49936526	49936526	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	537	812	1	ENST00000296474.3:c.1401G>T	p.Met467Ile	p.M467I	ENST00000296474	NM_002447.2	467	atG/atT						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	262	404	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	178	406	0	ENST00000269305.4:c.920-2A>T		p.X307_splice	ENST00000269305	NM_001126112.2	307							NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70405541	70405541	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs72799515		P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	184	326	0	ENST00000373644.4:c.3055A>G	p.Lys1019Glu	p.K1019E	ENST00000373644	NM_030625.2	1019	Aaa/Gaa						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9862850	9862850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	226	540	0	ENST00000330684.3:c.2453C>T	p.Ala818Val	p.A818V	ENST00000330684	NM_001134407.1	818	gCg/gTg						NEWRECORD																																																																									
JUN	3725	MSKCC	GRCh37	1	59248487	59248487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	123	515	1	ENST00000371222.2:c.256G>T	p.Gly86Trp	p.G86W	ENST00000371222	NM_002228.3	86	Ggg/Tgg						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189584586	189584586	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	115	417	0	ENST00000264731.3:c.882G>C	p.Gln294His	p.Q294H	ENST00000264731	NM_003722.4	294	caG/caC						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112154972	112154972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	273	501	0	ENST00000257430.4:c.1243G>A	p.Ala415Thr	p.A415T	ENST00000257430	NM_000038.5	415	Gct/Act						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	94120658	94120658	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	258	931	0	ENST00000369303.4:c.393C>G	p.Asp131Glu	p.D131E	ENST00000369303	NM_004440.3	131	gaC/gaG						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55229241	55229241	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	108	444	0	ENST00000275493.2:c.1548G>A	p.Trp516Ter	p.W516*	ENST00000275493	NM_005228.3	516	tgG/tgA						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8331600	8331600	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	156	637	0	ENST00000356435.5:c.5516C>A	p.Pro1839His	p.P1839H	ENST00000356435		1839	cCc/cAc						NEWRECORD																																																																									
TRAF2	7186	MSKCC	GRCh37	9	139815652	139815652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	359	677	4	ENST00000247668.2:c.1123G>A	p.Ala375Thr	p.A375T	ENST00000247668	NM_021138.3	375	Gcc/Acc						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88576277	88576277	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	78	221	0	ENST00000360948.2:c.1397-1G>T		p.X466_splice	ENST00000360948	NM_001012338.2	466							NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11141493	11141493	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs11537675		P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	256	524	0	ENST00000344626.4:c.3470G>T	p.Arg1157Leu	p.R1157L	ENST00000344626	NM_003072.3	1157	cGg/cTg						NEWRECORD																																																																									
GATA1	2623	MSKCC	GRCh37	X	48649578	48649578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	127	867	1	ENST00000376670.3:c.62C>A	p.Pro21His	p.P21H	ENST00000376670	NM_002049.3	21	cCt/cAt						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70352243	70352243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	71	654	0	ENST00000374080.3:c.4270G>A	p.Gly1424Ser	p.G1424S	ENST00000374080		1424	Ggt/Agt						NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100629579	100629579	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	71	780	0	ENST00000308731.7:c.185C>A	p.Thr62Asn	p.T62N	ENST00000308731	NM_000061.2	62	aCt/aAt						NEWRECORD																																																																									
GNAQ	2776	MSKCC	GRCh37	9	80537177	80537177	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	56	257	0	ENST00000286548.4:c.221del	p.Gly74AlafsTer17	p.G74Afs*17	ENST00000286548	NM_002072.3	74	gGc/gc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8484349	8484349	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	26	162	0	ENST00000356435.5:c.3183A>C	p.Glu1061Asp	p.E1061D	ENST00000356435		1061	gaA/gaC						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0010466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	134	136	0	ENST00000397752.3:c.3028+1del		p.D1010fs	ENST00000397752	NM_000245.2	1010	Gat/at						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0012246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	248	589	2	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135787737	135787737	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0012246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	278	717	0	ENST00000298552.3:c.845C>G	p.Ser282Ter	p.S282*	ENST00000298552	NM_001162426.1	282	tCa/tGa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023895	27023895	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	205	210	0	ENST00000324856.7:c.1001C>A	p.Ser334Ter	p.S334*	ENST00000324856	NM_006015.4	334	tCg/tAg						NEWRECORD																																																																									
BMPR1A	657	MSKCC	GRCh37	10	88659794	88659794	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	209	612	0	ENST00000372037.3:c.441T>A	p.Phe147Leu	p.F147L	ENST00000372037	NM_004329.2	147	ttT/ttA						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0013924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	129	546	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40827892	40827892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	170	833	1	ENST00000373198.4:c.2536G>A	p.Val846Ile	p.V846I	ENST00000373198	NM_133170.3	846	Gtc/Atc						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134884881	134884881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	138	780	1	ENST00000398015.3:c.1657G>A	p.Val553Ile	p.V553I	ENST00000398015	NM_004441.4	553	Gtt/Att						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0013701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	66	252	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0013701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	166	392	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108142016	108142016	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	104	334	1	ENST00000278616.4:c.2960G>T	p.Cys987Phe	p.C987F	ENST00000278616	NM_000051.3	987	tGt/tTt						NEWRECORD																																																																									
CBL	867	MSKCC	GRCh37	11	119148967	119148967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	85	365	1	ENST00000264033.4:c.1187G>T	p.Cys396Phe	p.C396F	ENST00000264033	NM_005188.3	396	tGt/tTt						NEWRECORD																																																																									
TCF3	6929	MSKCC	GRCh37	19	1612319	1612319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	91	762	1	ENST00000344749.5:c.1700G>A	p.Arg567Gln	p.R567Q	ENST00000344749	NM_001136139.2	567	cGg/cAg						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99160363	99160363	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	59	426	0	ENST00000074304.5:c.842G>T	p.Gly281Val	p.G281V	ENST00000074304	NM_001134224.1	281	gGa/gTa						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212252716	212252716	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	53	217	0	ENST00000342788.4:c.3137G>T	p.Ser1046Ile	p.S1046I	ENST00000342788	NM_005235.2	1046	aGt/aTt						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30713718	30713718	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	39	248	0	ENST00000359013.4:c.1118G>T	p.Arg373Leu	p.R373L	ENST00000359013	NM_001024847.2	373	cGc/cTc						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70346284	70346284	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	89	510	1	ENST00000374080.3:c.2635C>A	p.Leu879Ile	p.L879I	ENST00000374080		879	Ctc/Atc						NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100617622	100617622	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	149	570	0	ENST00000308731.7:c.447T>A	p.Asp149Glu	p.D149E	ENST00000308731	NM_000061.2	149	gaT/gaA						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	72	541	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0015056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	182	629	1	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg						NEWRECORD																																																																									
MAX	4149	MSKCC	GRCh37	14	65543379	65543397	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGACTAAAAGGCAACCAAG	GGACTAAAAGGCAACCAAG	-			P-0015056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	87	548	0	ENST00000358664.4:c.296-16_298del		p.X99_splice	ENST00000358664	NM_002382.4	99							NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67590418	67590418	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	76	355	0	ENST00000274335.5:c.1482del	p.Phe494LeufsTer16	p.F494Lfs*16	ENST00000274335		494	Ttt/tt						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32166321	32166321	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	105	747	1	ENST00000375023.3:c.4633C>A	p.Pro1545Thr	p.P1545T	ENST00000375023	NM_004557.3	1545	Cca/Aca						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	93956596	93956597	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0015056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	77	496	1	ENST00000369303.4:c.2639_2640delinsTT	p.Arg880Ile	p.R880I	ENST00000369303	NM_004440.3	880	aGG/aTT						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2976842	2976842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	138	691	0	ENST00000396946.4:c.1170G>T	p.Gln390His	p.Q390H	ENST00000396946	NM_032415.4	390	caG/caT						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106523591	106523591	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	85	475	0	ENST00000359195.3:c.2743T>A	p.Ser915Thr	p.S915T	ENST00000359195	NM_002649.2	915	Tcc/Acc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151945020	151945020	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	23	82	0	ENST00000262189.6:c.2499A>T	p.Arg833Ser	p.R833S	ENST00000262189	NM_170606.2	833	agA/agT						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0011133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	470	489	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48878062	48878062	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	93	276	1	ENST00000267163.4:c.19del	p.Arg7GlufsTer58	p.R7Efs*58	ENST00000267163	NM_000321.2	5	aCc/ac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0015009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	63	779	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151879626	151879628	+	frameshift_variant	Frame_Shift_Del	DEL	AAG	AAG	T			P-0015009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	18	282	0	ENST00000262189.6:c.5317_5319delinsA	p.Leu1773ArgfsTer6	p.L1773Rfs*6	ENST00000262189	NM_170606.2	1773	CTT/A						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0014716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	237	449	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
FOXP1	27086	MSKCC	GRCh37	3	71101710	71101712	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0014716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	126	281	0	ENST00000318789.4:c.486_488del	p.Gln162del	p.Q162del	ENST00000318789	NM_032682.5	162	caACAt/cat						NEWRECORD																																																																									
TCEB1	6921	MSKCC	GRCh37	8	74868265	74868265	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	378	783	0	ENST00000284811.8:c.29G>C	p.Gly10Ala	p.G10A	ENST00000284811		10	gGc/gCc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	36	619	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0013792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	163	367	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215610446	215610446	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	40	590	1	ENST00000260947.4:c.1810G>A	p.Val604Ile	p.V604I	ENST00000260947	NM_000465.2	604	Gta/Ata						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578188	7578197	+	frameshift_variant	Frame_Shift_Del	DEL	CATAGGGCAC	CATAGGGCAC	-			P-0013792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	134	879	0	ENST00000269305.4:c.652_661del	p.Val218SerfsTer26	p.V218Sfs*26	ENST00000269305	NM_001126112.2	218	GTGCCCTATGag/ag						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	335	511	0	ENST00000349496.5:c.95A>C	p.Asp32Ala	p.D32A	ENST00000349496	NM_001904.3	32	gAc/gCc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916933	+	missense_variant	Missense_Mutation	ONP	GCAA	GCAA	TCAG			P-0010746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1350	459	798	0	ENST00000263967.3:c.317_320delinsTCAG	p.Gly106_Asn107delinsValSer	p.G106_N107delinsVS	ENST00000263967	NM_006218.2	106	gGCAAc/gTCAGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753660142		P-0014771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	174	714	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602289	10602290	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0014771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	74	655	3	ENST00000171111.5:c.1288_1289delinsTT	p.Gly430Phe	p.G430F	ENST00000171111	NM_203500.1	430	GGc/TTc						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117686239	117686239	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	44	275	0	ENST00000368508.3:c.3102del	p.Arg1035GlufsTer45	p.R1035Efs*45	ENST00000368508	NM_002944.2	1034	ctT/ct						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8341089	8341089	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0014771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	45	447	0	ENST00000356435.5:c.5126+1G>T		p.X1709_splice	ENST00000356435		1709							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0012437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	164	580	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295321	1295321	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0012437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	82	471	0				ENST00000310581	NM_198253.2								NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46254623	46254623	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	160	593	1	ENST00000334344.6:c.4813G>T	p.Gly1605Cys	p.G1605C	ENST00000334344	NM_152641.2	1605	Ggc/Tgc						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	29008210	29008210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	88	532	0	ENST00000282397.4:c.661C>T	p.Leu221Phe	p.L221F	ENST00000282397	NM_002019.4	221	Ctc/Ttc						NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14024687	14024687	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	62	572	0	ENST00000311895.7:c.913A>G	p.Thr305Ala	p.T305A	ENST00000311895	NM_005236.2	305	Aca/Gca						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47032535	47032535	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	100	377	0	ENST00000329236.7:c.211del	p.Gln71SerfsTer14	p.Q71Sfs*14	ENST00000329236	NM_001204466.1	70	ggC/gg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577077	7577082	+	inframe_deletion	In_Frame_Del	DEL	CTCTTC	CTCTTC	-			P-0010645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	91	459	0	ENST00000269305.4:c.856_861del	p.Glu286_Glu287del	p.E286_E287del	ENST00000269305	NM_001126112.2	286	GAAGAG/-						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106180816	106180816	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	99	339	0	ENST00000380013.4:c.3844G>T	p.Gly1282Cys	p.G1282C	ENST00000380013	NM_001127208.2	1282	Ggt/Tgt						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117710641	117710641	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	64	425	0	ENST00000368508.3:c.1631A>T	p.Asn544Ile	p.N544I	ENST00000368508	NM_002944.2	544	aAc/aTc						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66765348	66765348	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	82	286	0	ENST00000374690.3:c.360G>T	p.Gln120His	p.Q120H	ENST00000374690	NM_000044.3	120	caG/caT						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3779440	3779440	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	51	571	0	ENST00000262367.5:c.5608G>C	p.Ala1870Pro	p.A1870P	ENST00000262367	NM_004380.2	1870	Gcc/Ccc						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48878083	48878120	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCGCCGCTGCCGCCGCGGAACCCCCGGCACCGCCG	CCGCCGCCGCTGCCGCCGCGGAACCCCCGGCACCGCCG	-			P-0011156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	25	151	0	ENST00000267163.4:c.43_80del	p.Ala15ProfsTer3	p.A15Pfs*3	ENST00000267163	NM_000321.2	12	aCCGCCGCCGCTGCCGCCGCGGAACCCCCGGCACCGCCG/a						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012579-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	132	773	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48593491	48593494	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0012579-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	73	671	1	ENST00000342988.3:c.1245_1248del	p.Asp415GlufsTer20	p.D415Efs*20	ENST00000342988	NM_005359.5	414	ttAGAC/tt						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73336166	73336166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	380	481	1	ENST00000377767.4:c.2237G>A	p.Arg746His	p.R746H	ENST00000377767	NM_014953.3	746	cGc/cAc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	315	353	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1192	584	679	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70120527	70120527	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	48	260	0	ENST00000245479.2:c.1529G>C	p.Ter510SerextTer49	p.*510Sext*49	ENST00000245479	NM_000346.3	510	tGa/tCa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	308	501	0	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70333266	70333266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1219	89	450	0	ENST00000373644.4:c.1171G>A	p.Glu391Lys	p.E391K	ENST00000373644	NM_030625.2	391	Gag/Aag						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48951053	48951053	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	115	230	0	ENST00000267163.4:c.1216-1G>A		p.X406_splice	ENST00000267163	NM_000321.2	406							NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36206722	36206722	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	208	305	0	ENST00000300305.3:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000300305		264	Cag/Tag						NEWRECORD																																																																									
TCF3	6929	MSKCC	GRCh37	19	1615698	1615698	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145878545		P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	304	778	1	ENST00000344749.5:c.1573C>T	p.Arg525Trp	p.R525W	ENST00000344749	NM_001136139.2	525	Cgg/Tgg						NEWRECORD																																																																									
CEBPA	1050	MSKCC	GRCh37	19	33793098	33793098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	82	339	0	ENST00000498907.2:c.223G>A	p.Asp75Asn	p.D75N	ENST00000498907	NM_004364.3	75	Gac/Aac						NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48027263	48027263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	68	314	0	ENST00000234420.5:c.2141C>T	p.Ser714Phe	p.S714F	ENST00000234420	NM_000179.2	714	tCt/tTt						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47103803	47103803	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1015	115	531	0	ENST00000409792.3:c.6143G>C	p.Arg2048Thr	p.R2048T	ENST00000409792	NM_014159.6	2048	aGa/aCa						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106180845	106180845	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	83	323	0	ENST00000380013.4:c.3873G>C	p.Trp1291Cys	p.W1291C	ENST00000380013	NM_001127208.2	1291	tgG/tgC						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187525019	187525019	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	119	340	0	ENST00000441802.2:c.10661C>A	p.Ser3554Tyr	p.S3554Y	ENST00000441802	NM_005245.3	3554	tCt/tAt						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1264696	1264696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	74	471	0	ENST00000310581.5:c.2666G>A	p.Arg889Gln	p.R889Q	ENST00000310581	NM_198253.2	889	cGa/cAa						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180055966	180055966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	72	468	0	ENST00000261937.6:c.1019G>A	p.Gly340Glu	p.G340E	ENST00000261937	NM_182925.4	340	gGa/gAa						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2983998	2983998	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	125	630	0	ENST00000396946.4:c.532G>C	p.Glu178Gln	p.E178Q	ENST00000396946	NM_032415.4	178	Gag/Cag						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106522607	106522607	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	220	432	0	ENST00000359195.3:c.2584C>G	p.Leu862Val	p.L862V	ENST00000359195	NM_002649.2	862	Cta/Gta						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98209376	98209376	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	59	340	0	ENST00000331920.6:c.4162G>C	p.Gly1388Arg	p.G1388R	ENST00000331920	NM_000264.3	1388	Ggg/Cgg						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70332161	70332161	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1208	86	514	0	ENST00000373644.4:c.66G>C	p.Lys22Asn	p.K22N	ENST00000373644	NM_030625.2	22	aaG/aaC						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70406506	70406506	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	224	409	1	ENST00000373644.4:c.4020C>G	p.Ile1340Met	p.I1340M	ENST00000373644	NM_030625.2	1340	atC/atG						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118352582	118352582	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			954	112	476	0	ENST00000534358.1:c.3787C>G	p.Pro1263Ala	p.P1263A	ENST00000534358	NM_005933.3	1263	Cca/Gca						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118373884	118373884	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	80	347	0	ENST00000534358.1:c.7277G>C	p.Arg2426Thr	p.R2426T	ENST00000534358	NM_005933.3	2426	aGa/aCa						NEWRECORD																																																																									
RAB35	11021	MSKCC	GRCh37	12	120536692	120536692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	255	649	1	ENST00000229340.5:c.400G>A	p.Asp134Asn	p.D134N	ENST00000229340	NM_006861.6	134	Gat/Aat						NEWRECORD																																																																									
RAB35	11021	MSKCC	GRCh37	12	120554439	120554439	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	22	156	0	ENST00000229340.5:c.16G>C	p.Asp6His	p.D6H	ENST00000229340	NM_006861.6	6	Gac/Cac						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42057198	42057198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	66	601	0	ENST00000219905.7:c.7859C>T	p.Ser2620Phe	p.S2620F	ENST00000219905	NM_001164273.1	2620	tCt/tTt						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15942864	15942864	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	294	478	0	ENST00000268712.3:c.6838G>C	p.Glu2280Gln	p.E2280Q	ENST00000268712	NM_006311.3	2280	Gag/Cag						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29527439	29527439	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	59	220	0	ENST00000358273.4:c.889-1G>C		p.X297_splice	ENST00000358273	NM_001042492.2	297							NEWRECORD																																																																									
STAT3	6774	MSKCC	GRCh37	17	40498688	40498688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	432	578	1	ENST00000264657.5:c.172C>T	p.His58Tyr	p.H58Y	ENST00000264657	NM_139276.2	58	Cat/Tat						NEWRECORD																																																																									
AURKA	6790	MSKCC	GRCh37	20	54961471	54961471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	31	219	0	ENST00000312783.6:c.161C>T	p.Ser54Phe	p.S54F	ENST00000312783	NM_198436.1	54	tCc/tTc						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70352286	70352286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	74	617	0	ENST00000374080.3:c.4313C>T	p.Ser1438Leu	p.S1438L	ENST00000374080		1438	tCa/tTa						NEWRECORD																																																																									
ARAF	369	MSKCC	GRCh37	X	47430385	47430385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	169	433	1	ENST00000377045.4:c.1660C>T	p.Arg554Trp	p.R554W	ENST00000377045	NM_001654.4	554	Cgg/Tgg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0010013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	17	407	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47041663	47041663	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	17	299	0	ENST00000329236.7:c.1657del	p.Ala553HisfsTer73	p.A553Hfs*73	ENST00000329236	NM_001204466.1	552	Ggg/gg						NEWRECORD																																																																									
CASP8	841	MSKCC	GRCh37	2	202149987	202149987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	55	550	0	ENST00000358485.4:c.1428G>T	p.Glu476Asp	p.E476D	ENST00000358485	NM_001080125.1	476	gaG/gaT						NEWRECORD																																																																									
SDHAF2	54949	MSKCC	GRCh37	11	61197647	61197647	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	46	714	1	ENST00000301761.2:c.29C>A	p.Ser10Ter	p.S10*	ENST00000301761	NM_017841.2	10	tCg/tAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0010049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	181	398	1	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112102086	112102086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	43	496	2	ENST00000257430.4:c.199G>A	p.Asp67Asn	p.D67N	ENST00000257430	NM_000038.5	67	Gat/Aat						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70117739	70117741	+	frameshift_variant	Frame_Shift_Del	DEL	CCC	CCC	G			P-0010049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	314	636	0	ENST00000245479.2:c.207_209delinsG	p.Phe69LeufsTer182	p.F69Lfs*182	ENST00000245479	NM_000346.3	69	ttCCCc/ttGc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	27	470	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0011517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1207	65	848	1	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0011517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	70	693	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604754	48604754	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1044	64	786	0	ENST00000342988.3:c.1576G>C	p.Glu526Gln	p.E526Q	ENST00000342988	NM_005359.5	526	Gaa/Caa						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105239326	105239326	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1141	67	797	0	ENST00000349310.3:c.1061A>T	p.His354Leu	p.H354L	ENST00000349310	NM_001014432.1	354	cAt/cTt						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89357089	89357089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1442	101	932	0	ENST00000301030.4:c.545G>T	p.Arg182Leu	p.R182L	ENST00000301030	NM_001256183.1	182	cGg/cTg						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29541604	29541604	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0011517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	20	306	0	ENST00000358273.4:c.1527+1G>A		p.X509_splice	ENST00000358273	NM_001042492.2	509							NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56435917	56435917	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	39	543	0	ENST00000407977.2:c.1220G>C	p.Gly407Ala	p.G407A	ENST00000407977		407	gGa/gCa						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56436000	56436000	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	29	434	2	ENST00000407977.2:c.1137G>C	p.Gln379His	p.Q379H	ENST00000407977		379	caG/caC						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47028790	47028790	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1289	79	942	2	ENST00000329236.7:c.94C>T	p.Arg32Ter	p.R32*	ENST00000329236	NM_001204466.1	32	Cga/Tga						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	61	303	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	55	340	1	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc						NEWRECORD																																																																									
MALT1	10892	MSKCC	GRCh37	18	56414737	56414737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	130	927	0	ENST00000348428.3:c.2138C>T	p.Ala713Val	p.A713V	ENST00000348428	NM_006785.3	713	gCt/gTt						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152382152	152382154	+	inframe_deletion	In_Frame_Del	DEL	TGG	TGG	-			P-0014435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	205	363	0	ENST00000206249.3:c.1265_1267del	p.Val422del	p.V422del	ENST00000206249	NM_000125.3	421	aTGGtg/atg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0011512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	375	491	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175328	112175348	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	CAGCCAGGCACAAAGCTGTTG	CAGCCAGGCACAAAGCTGTTG	-			P-0011512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	186	262	0	ENST00000257430.4:c.4037_4057del	p.Ser1346_Glu1353delinsTer	p.S1346_E1353delins*	ENST00000257430	NM_000038.5	1346	tCAGCCAGGCACAAAGCTGTTGaa/taa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28929495		P-0012574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	90	620	0	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249029	55249029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	71	629	3	ENST00000275493.2:c.2327G>A	p.Arg776His	p.R776H	ENST00000275493	NM_005228.3	776	cGc/cAc						NEWRECORD																																																																									
NFKBIA	4792	MSKCC	GRCh37	14	35873759	35873759	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	79	673	0	ENST00000216797.5:c.92A>G	p.Asp31Gly	p.D31G	ENST00000216797	NM_020529.2	31	gAc/gGc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			134	586	436	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30729888	30729888	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			70	184	192	0	ENST00000359013.4:c.1484A>G	p.Tyr495Cys	p.Y495C	ENST00000359013	NM_001024847.2	495	tAt/tGt						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157528486	157528486	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			364	202	442	0	ENST00000346085.5:c.6211G>T	p.Gly2071Ter	p.G2071*	ENST00000346085	NM_020732.3	2071	Gga/Tga						NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	161781193	161781193	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			538	316	788	0	ENST00000366898.1:c.1212A>T	p.Glu404Asp	p.E404D	ENST00000366898	NM_004562.2	404	gaA/gaT						NEWRECORD																																																																									
CDK6	1021	MSKCC	GRCh37	7	92252400	92252400	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			119	45	125	1	ENST00000265734.4:c.648G>T	p.Lys216Asn	p.K216N	ENST00000265734	NM_001259.6	216	aaG/aaT						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42042322	42042322	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			430	686	1818	0	ENST00000219905.7:c.6517A>T	p.Arg2173Ter	p.R2173*	ENST00000219905	NM_001164273.1	2173	Aga/Tga						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63411868	63411868	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1224	608	2170	1	ENST00000330258.3:c.1299C>A	p.His433Gln	p.H433Q	ENST00000330258	NM_152424.3	433	caC/caA						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66765322	66765322	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			866	442	1509	3	ENST00000374690.3:c.334G>T	p.Glu112Ter	p.E112*	ENST00000374690	NM_000044.3	112	Gag/Tag						NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100608300	100608300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			511	334	849	0	ENST00000308731.7:c.1790C>T	p.Pro597Leu	p.P597L	ENST00000308731	NM_000061.2	597	cCa/cTa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576913	7576943	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTGTTGGGCAGTGCTAGGAAAGAGGCAAGG	GTTGTTGGGCAGTGCTAGGAAAGAGGCAAGG	-			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			106	209	484	0	ENST00000269305.4:c.920-17_933del		p.X307_splice	ENST00000269305	NM_001126112.2	307							NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38944605	38944605	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			420	197	374	0	ENST00000357387.3:c.4856del	p.Leu1619Ter	p.L1619*	ENST00000357387	NM_152756.3	1619	tTa/ta						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212251665	212251665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			644	139	745	0	ENST00000342788.4:c.3394C>T	p.Pro1132Ser	p.P1132S	ENST00000342788	NM_005235.2	1132	Ccc/Tcc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173750	112173750	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			402	63	378	0	ENST00000257430.4:c.2459C>G	p.Thr820Ser	p.T820S	ENST00000257430	NM_000038.5	820	aCt/aGt						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8317917	8317917	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			447	89	518	1	ENST00000356435.5:c.5696C>A	p.Ala1899Asp	p.A1899D	ENST00000356435		1899	gCc/gAc						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68835593	68835593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	48	545	2	ENST00000261769.5:c.184G>A	p.Gly62Ser	p.G62S	ENST00000261769	NM_004360.3	62	Ggt/Agt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	103	322	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578440	7578440	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0011312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	81	339	0	ENST00000269305.4:c.490A>T	p.Lys164Ter	p.K164*	ENST00000269305	NM_001126112.2	164	Aag/Tag						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37681036	37681036	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	56	347	0	ENST00000447079.4:c.3205G>C	p.Glu1069Gln	p.E1069Q	ENST00000447079	NM_015083.1	1069	Gaa/Caa						NEWRECORD																																																																									
NF2	4771	MSKCC	GRCh37	22	30069291	30069291	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	106	359	0	ENST00000338641.4:c.1156G>T	p.Glu386Ter	p.E386*	ENST00000338641	NM_000268.3	386	Gaa/Taa						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64577312	64577332	+	inframe_deletion	In_Frame_Del	DEL	ATAGAGGGCGGCGATGATAGA	ATAGAGGGCGGCGATGATAGA	-			P-0011312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	50	441	0	ENST00000337652.1:c.250_270delTCTATCATCGCCGCCCTCTAT	p.Ser84_Tyr90del	p.S84_Y90del	ENST00000337652	NM_130803.2	84	TCTATCATCGCCGCCCTCTAT/-						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25470011	25470011	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	169	409	1	ENST00000264709.3:c.1031T>C	p.Leu344Pro	p.L344P	ENST00000264709	NM_175629.2	344	cTg/cCg						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56177878	56177878	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	1441	449	2	ENST00000399503.3:c.2851C>T	p.Gln951Ter	p.Q951*	ENST00000399503	NM_005921.1	951	Caa/Taa						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47677805	47677805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1337	204	521	0	ENST00000347630.2:c.1060C>T	p.Arg354Cys	p.R354C	ENST00000347630	NM_001007230.1	354	Cgc/Tgc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	81	342	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0010350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	107	348	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0010350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	267	456	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0010350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	22	162	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat						NEWRECORD																																																																									
GPS2	2874	MSKCC	GRCh37	17	7217705	7217707	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs757139280		P-0010350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	85	790	0	ENST00000380728.2:c.220_222del	p.Glu74del	p.E74del	ENST00000380728		74	GAG/-						NEWRECORD																																																																									
NF2	4771	MSKCC	GRCh37	22	30061040	30061040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	90	547	3	ENST00000338641.4:c.872G>A	p.Arg291His	p.R291H	ENST00000338641	NM_000268.3	291	cGt/cAt						NEWRECORD																																																																									
EIF1AX	1964	MSKCC	GRCh37	X	20159748	20159748	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	250	598	1	ENST00000379607.5:c.11A>T	p.Asn4Ile	p.N4I	ENST00000379607	NM_001412.3	4	aAt/aTt						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63409848	63409848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	296	623	0	ENST00000330258.3:c.3319C>T	p.Leu1107Phe	p.L1107F	ENST00000330258	NM_152424.3	1107	Ctt/Ttt						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73345240	73345240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	264	557	0	ENST00000377767.4:c.1649C>T	p.Ser550Phe	p.S550F	ENST00000377767	NM_014953.3	550	tCc/tTc						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061148	38061212	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGGCGGCGCAAG	CGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGGCGGCGCAAG	-			P-0013336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	51	106	0	ENST00000250448.2:c.777_841del	p.Tyr259Ter	p.Y259*	ENST00000250448	NM_004496.3	259	taCTTGCGCCGCCAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGga/taga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174502	112174502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	120	208	0	ENST00000257430.4:c.3211C>T	p.Gln1071Ter	p.Q1071*	ENST00000257430	NM_000038.5	1071	Caa/Taa						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971053	21971053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	58	147	0	ENST00000304494.5:c.305C>T	p.Ala102Val	p.A102V	ENST00000304494	NM_000077.4	102	gCg/gTg						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64573123	64573123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	42	155	0	ENST00000337652.1:c.1184C>T	p.Pro395Leu	p.P395L	ENST00000337652	NM_130803.2	395	cCg/cTg						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	475226	475226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	105	292	0	ENST00000399788.2:c.411G>T	p.Lys137Asn	p.K137N	ENST00000399788	NM_001042603.1	137	aaG/aaT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577521	7577521	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	225	285	0	ENST00000269305.4:c.760A>T	p.Ile254Phe	p.I254F	ENST00000269305	NM_001126112.2	254	Atc/Ttc						NEWRECORD																																																																									
MYC	4609	MSKCC	GRCh37	8	128750587	128750589	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0011347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1333	86	288	0	ENST00000377970.2:c.130_132delGAG	p.Glu44del	p.E44del	ENST00000377970	NM_002467.4	42	GAG/-						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	29	440	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0014502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	141	484	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931589		P-0014502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	11	299	0	ENST00000349496.5:c.101G>A	p.Gly34Glu	p.G34E	ENST00000349496	NM_001904.3	34	gGa/gAa						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604650	48604650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	15	287	0	ENST00000342988.3:c.1472G>T	p.Gly491Val	p.G491V	ENST00000342988	NM_005359.5	491	gGt/gTt						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16264024	16264024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1314	410	717	0	ENST00000375759.3:c.10393C>T	p.Pro3465Ser	p.P3465S	ENST00000375759	NM_015001.2	3465	Ccc/Tcc						NEWRECORD																																																																									
MYOD1	4654	MSKCC	GRCh37	11	17742874	17742879	+	protein_altering_variant	In_Frame_Del	DEL	CCGAGA	CCGAGA	AGG			P-0014502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	118	585	1	ENST00000250003.3:c.782_787delinsAGG	p.Thr261_Ser263delinsLysGly	p.T261_S263delinsKG	ENST00000250003	NM_002478.4	261	aCCGAGAgc/aAGGgc						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57865508	57865508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	43	506	1	ENST00000228682.2:c.2985G>T	p.Leu995Phe	p.L995F	ENST00000228682	NM_005269.2	995	ttG/ttT						NEWRECORD																																																																									
MAP2K2	5605	MSKCC	GRCh37	19	4099221	4099221	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	76	450	0	ENST00000262948.5:c.897G>C	p.Arg299Ser	p.R299S	ENST00000262948	NM_030662.3	299	agG/agC						NEWRECORD																																																																									
IRS1	3667	MSKCC	GRCh37	2	227661440	227661440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	75	396	0	ENST00000305123.5:c.2015C>G	p.Ser672Cys	p.S672C	ENST00000305123	NM_005544.2	672	tCt/tGt						NEWRECORD																																																																									
KLF4	9314	MSKCC	GRCh37	9	110249315	110249315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	170	760	0	ENST00000374672.4:c.1258C>T	p.His420Tyr	p.H420Y	ENST00000374672	NM_004235.4	420	Cac/Tac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	75	589	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0014690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	142	693	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56436140	56436140	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	121	752	0	ENST00000407977.2:c.997del	p.Gln333LysfsTer86	p.Q333Kfs*86	ENST00000407977		333	Caa/aa						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67589552	67589552	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	28	278	0	ENST00000274335.5:c.1315G>T	p.Glu439Ter	p.E439*	ENST00000274335		439	Gaa/Taa						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72832438	72832438	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	119	288	1	ENST00000268489.5:c.4143del	p.Phe1381LeufsTer44	p.F1381Lfs*44	ENST00000268489	NM_006885.3	1381	ttT/tt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0012041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	545	442	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0012041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	286	419	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0012041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	256	383	1	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48955432	48955432	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	325	262	0	ENST00000267163.4:c.1548G>A	p.Trp516Ter	p.W516*	ENST00000267163	NM_000321.2	516	tgG/tgA						NEWRECORD																																																																									
RFWD2	64326	MSKCC	GRCh37	1	175996758	175996758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	371	615	0	ENST00000367669.3:c.1679G>T	p.Cys560Phe	p.C560F	ENST00000367669	NM_022457.5	560	tGt/tTt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108155201	108155201	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs200196781		P-0012041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	234	386	1	ENST00000278616.4:c.3993+1G>A		p.X1331_splice	ENST00000278616	NM_000051.3	1331							NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56435452	56435452	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	288	416	0	ENST00000407977.2:c.1685del	p.Phe562SerfsTer138	p.F562Sfs*138	ENST00000407977		562	tTc/tc						NEWRECORD																																																																									
FANCC	2176	MSKCC	GRCh37	9	97873805	97873807	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0012041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	292	517	0	ENST00000289081.3:c.1267_1269del	p.Leu423del	p.L423del	ENST00000289081	NM_000136.2	423	CTG/-						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0010836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	39	427	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	229	311	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48586237	48586237	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0010303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	238	408	0	ENST00000342988.3:c.906G>A	p.Trp302Ter	p.W302*	ENST00000342988	NM_005359.5	302	tgG/tgA						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139410439	139410439	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	163	447	0	ENST00000277541.6:c.1663A>G	p.Thr555Ala	p.T555A	ENST00000277541	NM_017617.3	555	Acg/Gcg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	65	808	2	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0013749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	82	450	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0013749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	83	441	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga						NEWRECORD																																																																									
DAXX	1616	MSKCC	GRCh37	6	33287255	33287258	+	frameshift_variant	Frame_Shift_Del	DEL	ATTG	ATTG	-			P-0013749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	87	604	0	ENST00000374542.5:c.1839_1842del	p.Phe613LeufsTer31	p.F613Lfs*31	ENST00000374542	NM_001141970.1	613	ttCAAT/tt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1238	37	559	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0010844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1091	58	495	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011547-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	46	279	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PMS2	5395	MSKCC	GRCh37	7	6036984	6036984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011547-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	92	368	0	ENST00000265849.7:c.776G>A	p.Cys259Tyr	p.C259Y	ENST00000265849	NM_000535.5	259	tGt/tAt						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32456675	32456675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011547-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	16	131	0	ENST00000332351.3:c.217G>T	p.Val73Leu	p.V73L	ENST00000332351	NM_024426.4	73	Gtg/Ttg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108098600	108098600	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011547-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	32	148	0	ENST00000278616.4:c.170G>T	p.Trp57Leu	p.W57L	ENST00000278616	NM_000051.3	57	tGg/tTg						NEWRECORD																																																																									
PRKAR1A	5573	MSKCC	GRCh37	17	66523985	66523985	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011547-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	33	233	0	ENST00000358598.2:c.713G>C	p.Ser238Thr	p.S238T	ENST00000358598	NM_212471.2	238	aGc/aCc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577520	7577520	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	178	531	0	ENST00000269305.4:c.761T>G	p.Ile254Ser	p.I254S	ENST00000269305	NM_001126112.2	254	aTc/aGc						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88483916	88483916	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1165	122	691	0	ENST00000360948.2:c.1654G>T	p.Val552Phe	p.V552F	ENST00000360948	NM_001012338.2	552	Gtc/Ttc						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3843410	3843410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	95	358	0	ENST00000262367.5:c.1193G>A	p.Cys398Tyr	p.C398Y	ENST00000262367	NM_004380.2	398	tGt/tAt						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931588		P-0012121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	341	494	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95557642	95557642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	379	614	0	ENST00000343455.3:c.5425G>A	p.Gly1809Arg	p.G1809R	ENST00000343455	NM_177438.2	1809	Ggg/Agg						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143191860	143191860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	524	651	0	ENST00000262992.4:c.571G>A	p.Asp191Asn	p.D191N	ENST00000262992	NM_001101669.1	191	Gat/Aat						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32183045	32183045	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	312	582	1	ENST00000375023.3:c.1979C>A	p.Pro660Gln	p.P660Q	ENST00000375023	NM_004557.3	660	cCa/cAa						NEWRECORD																																																																									
TNFAIP3	7128	MSKCC	GRCh37	6	138199972	138199972	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	163	275	0	ENST00000237289.4:c.1390G>T	p.Ala464Ser	p.A464S	ENST00000237289	NM_001270507.1	464	Gca/Tca						NEWRECORD																																																																									
PAK1	5058	MSKCC	GRCh37	11	77054864	77054864	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	446	647	0	ENST00000356341.3:c.998G>T	p.Ser333Ile	p.S333I	ENST00000356341	NM_002576.4	333	aGt/aTt						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95557642	95557642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	364	614	0	ENST00000343455.3:c.5425G>T	p.Gly1809Trp	p.G1809W	ENST00000343455	NM_177438.2	1809	Ggg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	283	544	0	ENST00000269305.4:c.809T>G	p.Phe270Cys	p.F270C	ENST00000269305	NM_001126112.2	270	tTt/tGt						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25464570	25464570	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	316	360	0	ENST00000264709.3:c.1943T>C	p.Leu648Pro	p.L648P	ENST00000264709	NM_175629.2	648	cTg/cCg						NEWRECORD																																																																									
SDHA	6389	MSKCC	GRCh37	5	236675	236675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1472	65	218	0	ENST00000264932.6:c.1393C>T	p.Arg465Trp	p.R465W	ENST00000264932	NM_004168.2	465	Cgg/Tgg						NEWRECORD																																																																									
TRAF2	7186	MSKCC	GRCh37	9	139814731	139814731	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	139	553	0	ENST00000247668.2:c.724G>C	p.Glu242Gln	p.E242Q	ENST00000247668	NM_021138.3	242	Gag/Cag						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9923312	9923312	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	109	458	0	ENST00000330684.3:c.1975G>C	p.Val659Leu	p.V659L	ENST00000330684	NM_001134407.1	659	Gtg/Ctg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0011261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	307	298	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0011261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	49	133	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0011261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	131	401	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56180646	56180646	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	74	229	0	ENST00000399503.3:c.3975G>A	p.Trp1325Ter	p.W1325*	ENST00000399503	NM_005921.1	1325	tgG/tgA						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151845620	151845620	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	209	276	0	ENST00000262189.6:c.13392del	p.Cys4465ValfsTer52	p.C4465Vfs*52	ENST00000262189	NM_170606.2	4464	ttC/tt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0012160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	426	613	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	427428	427428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	427	482	1	ENST00000399788.2:c.2741C>T	p.Pro914Leu	p.P914L	ENST00000399788	NM_001042603.1	914	cCg/cTg						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2098674	2098689	+	frameshift_variant	Frame_Shift_Del	DEL	GGACTGGGAACACCGA	GGACTGGGAACACCGA	TTCTG			P-0013655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	328	578	2	ENST00000219476.3:c.58_73delinsTTCTG	p.Gly20PhefsTer11	p.G20Ffs*11	ENST00000219476	NM_000548.3	20	GGACTGGGAACACCGAgg/TTCTGgg						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153268150	153268150	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	238	477	1	ENST00000281708.4:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000281708	NM_033632.3	220	Caa/Taa						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131940533	131940533	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	366	511	0	ENST00000265335.6:c.2560C>G	p.Gln854Glu	p.Q854E	ENST00000265335		854	Cag/Gag						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176638680	176638680	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	158	438	0	ENST00000439151.2:c.3280A>G	p.Met1094Val	p.M1094V	ENST00000439151	NM_022455.4	1094	Atg/Gtg						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41729819	41729819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	302	630	0	ENST00000242208.4:c.710C>A	p.Ser237Tyr	p.S237Y	ENST00000242208	NM_002192.2	237	tCc/tAc						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913396		P-0011180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	68	465	0	ENST00000349496.5:c.95A>T	p.Asp32Val	p.D32V	ENST00000349496	NM_001904.3	32	gAc/gTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577530	7577530	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	117	436	0	ENST00000269305.4:c.751A>T	p.Ile251Phe	p.I251F	ENST00000269305	NM_001126112.2	251	Atc/Ttc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0012070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	141	812	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	136	461	0	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	124	541	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	140	480	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0010138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	38	444	2	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0010138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	34	334	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0010750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1152	412	607	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0010750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	475	558	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	203	554	1	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591889	48591889	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1060500741		P-0010750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	227	790	0	ENST00000342988.3:c.1052A>T	p.Asp351Val	p.D351V	ENST00000342988	NM_005359.5	351	gAt/gTt						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46254668	46254668	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	228	607	0	ENST00000334344.6:c.4858C>T	p.Gln1620Ter	p.Q1620*	ENST00000334344	NM_152641.2	1620	Cag/Tag						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52440360	52440360	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	171	399	0	ENST00000460680.1:c.692T>A	p.Met231Lys	p.M231K	ENST00000460680	NM_004656.3	231	aTg/aAg						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95562266	95562266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1023	114	639	2	ENST00000343455.3:c.4991C>T	p.Ser1664Leu	p.S1664L	ENST00000343455	NM_177438.2	1664	tCg/tTg						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5220149	5220149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	111	307	0	ENST00000357368.4:c.3566C>T	p.Ser1189Leu	p.S1189L	ENST00000357368	NM_002850.3	1189	tCa/tTa						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56491645	56491645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	408	614	3	ENST00000267101.3:c.2537G>T	p.Ser846Ile	p.S846I	ENST00000267101	NM_001982.3	846	aGt/aTt						NEWRECORD																																																																									
ACVR1	90	MSKCC	GRCh37	2	158622607	158622607	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	562	993	0	ENST00000263640.3:c.892A>T	p.Thr298Ser	p.T298S	ENST00000263640	NM_001105.4	298	Act/Tct						NEWRECORD																																																																									
DNAJB1	3337	MSKCC	GRCh37	19	14627361	14627361	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1213	162	1063	1	ENST00000254322.2:c.709T>A	p.Phe237Ile	p.F237I	ENST00000254322	NM_006145.1	237	Ttt/Att						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76954069	76954069	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	363	976	1	ENST00000373344.5:c.182A>T	p.Lys61Met	p.K61M	ENST00000373344	NM_000489.3	61	aAg/aTg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	754	321	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1247	52	448	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142278153	142278153	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	173	348	0	ENST00000350721.4:c.1672G>T	p.Asp558Tyr	p.D558Y	ENST00000350721	NM_001184.3	558	Gac/Tac						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66280107	66280107	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	258	419	0	ENST00000273854.3:c.1582G>T	p.Glu528Ter	p.E528*	ENST00000273854	NM_004439.5	528	Gag/Tag						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143067073	143067073	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	231	549	0	ENST00000262992.4:c.1640G>T	p.Gly547Val	p.G547V	ENST00000262992	NM_001101669.1	547	gGt/gTt						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99251225	99251225	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	170	434	0	ENST00000268035.6:c.529G>T	p.Glu177Ter	p.E177*	ENST00000268035	NM_000875.3	177	Gaa/Taa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578516	7578516	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	324	468	1	ENST00000269305.4:c.414delC	p.Lys139ArgfsTer31	p.K139Rfs*31	ENST00000269305	NM_001126112.2	138	gcC/gc						NEWRECORD																																																																									
TRAF7	84231	MSKCC	GRCh37	16	2225549	2225550	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0010385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	154	447	0	ENST00000326181.6:c.1552_1553delinsTT	p.Gly518Phe	p.G518F	ENST00000326181	NM_032271.2	518	GGc/TTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579463	7579472	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGCCACGG	GGGGCCACGG	-			P-0014962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	250	730	0	ENST00000269305.4:c.215_224del	p.Pro72LeufsTer48	p.P72Lfs*48	ENST00000269305	NM_001126112.2	72	cCCGTGGCCCCt/ct						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	33	562	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0013285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	313	695	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0013285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	183	633	1	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga						NEWRECORD																																																																									
CDK6	1021	MSKCC	GRCh37	7	92300798	92300798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	180	255	0	ENST00000265734.4:c.589G>A	p.Ala197Thr	p.A197T	ENST00000265734	NM_001259.6	197	Gcc/Acc						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15276726	15276726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	125	620	0	ENST00000263388.2:c.5539G>T	p.Ala1847Ser	p.A1847S	ENST00000263388	NM_000435.2	1847	Gcc/Tcc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380276	+	missense_variant	Missense_Mutation	DNP	TT	TT	CA			P-0012289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1150	60	684	0	ENST00000256078.4:c.182_183delAAinsTG	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAA/cTG						NEWRECORD																																																																									
TOP1	7150	MSKCC	GRCh37	20	39728765	39728765	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	47	432	0	ENST00000361337.2:c.1045A>G	p.Arg349Gly	p.R349G	ENST00000361337	NM_003286.2	349	Agg/Ggg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	64	422	0	ENST00000263967.3:c.3012G>A	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atA						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	178	529	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16259895	16259895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	141	512	0	ENST00000375759.3:c.7160G>A	p.Ser2387Asn	p.S2387N	ENST00000375759	NM_015001.2	2387	aGt/aAt						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25467448	25467448	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	126	450	0	ENST00000264709.3:c.1628del	p.Gly543AlafsTer108	p.G543Afs*108	ENST00000264709	NM_175629.2	543	gGc/gc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579347	7579358	+	inframe_deletion	In_Frame_Del	DEL	AGAAGCCCAGAC	AGAAGCCCAGAC	-			P-0013203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	122	596	0	ENST00000269305.4:c.329_340del	p.Arg110_Phe113del	p.R110_F113del	ENST00000269305	NM_001126112.2	110	cGTCTGGGCTTCTtg/ctg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0013996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	74	722	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	13	606	0	ENST00000263967.3:c.1634A>C	p.Glu545Ala	p.E545A	ENST00000263967	NM_006218.2	545	gAg/gCg						NEWRECORD																																																																									
CDKN1B	1027	MSKCC	GRCh37	12	12870904	12870904	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	105	340	0	ENST00000228872.4:c.131A>G	p.Asp44Gly	p.D44G	ENST00000228872	NM_004064.3	44	gAc/gGc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	164	394	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	226	568	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16257878	16257878	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	35	277	0	ENST00000375759.3:c.5143A>T	p.Met1715Leu	p.M1715L	ENST00000375759	NM_015001.2	1715	Atg/Ttg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49443763	49443763	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	69	818	0	ENST00000301067.7:c.3608A>G	p.Asp1203Gly	p.D1203G	ENST00000301067	NM_003482.3	1203	gAc/gGc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0013788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	18	259	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs17849781		P-0013788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	358	630	2	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	11998980	11998980	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	140	572	0	ENST00000353533.5:c.483del	p.Ile161MetfsTer36	p.I161Mfs*36	ENST00000353533	NM_003010.3	161	aTt/at						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116523	112116523	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	112	447	0	ENST00000257430.4:c.568G>T	p.Glu190Ter	p.E190*	ENST00000257430	NM_000038.5	190	Gaa/Taa						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76972715	76972715	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	50	297	0	ENST00000373344.5:c.26G>T	p.Ser9Ile	p.S9I	ENST00000373344	NM_000489.3	9	aGc/aTc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0010133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	168	402	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0010133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	404	484	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc						NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14042083	14042083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	72	430	0	ENST00000311895.7:c.2630C>T	p.Ala877Val	p.A877V	ENST00000311895	NM_005236.2	877	gCa/gTa						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0012284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	255	618	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29541577	29541577	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	173	429	0	ENST00000358273.4:c.1501C>A	p.His501Asn	p.H501N	ENST00000358273	NM_001042492.2	501	Cat/Aat						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247244	153247244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	117	412	0	ENST00000281708.4:c.1558G>A	p.Asp520Asn	p.D520N	ENST00000281708	NM_033632.3	520	Gat/Aat						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63411279	63411279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	41	230	0	ENST00000330258.3:c.1888G>T	p.Ala630Ser	p.A630S	ENST00000330258	NM_152424.3	630	Gcc/Tcc						NEWRECORD																																																																									
EIF1AX	1964	MSKCC	GRCh37	X	20153903	20153903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	31	128	0	ENST00000379607.5:c.157G>A	p.Asp53Asn	p.D53N	ENST00000379607	NM_001412.3	53	Gat/Aat						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212568857	212568857	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	118	355	0	ENST00000342788.4:c.1261G>T	p.Val421Leu	p.V421L	ENST00000342788	NM_005235.2	421	Gtg/Ttg						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212652816	212652816	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	108	439	0	ENST00000342788.4:c.490C>A	p.Gln164Lys	p.Q164K	ENST00000342788	NM_005235.2	164	Caa/Aaa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187532783	187532783	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	86	408	0	ENST00000441802.2:c.9610C>T	p.Gln3204Ter	p.Q3204*	ENST00000441802	NM_005245.3	3204	Caa/Taa						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86564809	86564809	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0011402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	103	493	0	ENST00000274376.6:c.539+2T>G		p.X180_splice	ENST00000274376	NM_002890.2	180							NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149499666	149499666	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	82	370	0	ENST00000261799.4:c.2607G>C	p.Trp869Cys	p.W869C	ENST00000261799	NM_002609.3	869	tgG/tgC						NEWRECORD																																																																									
FOXO1	2308	MSKCC	GRCh37	13	41133731	41133731	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	110	516	0	ENST00000379561.5:c.1897G>C	p.Asp633His	p.D633H	ENST00000379561	NM_002015.3	633	Gac/Cac						NEWRECORD																																																																									
SRC	6714	MSKCC	GRCh37	20	36031707	36031707	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	59	418	0	ENST00000358208.4:c.1536C>G	p.Phe512Leu	p.F512L	ENST00000358208		512	ttC/ttG						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139418204	139418204	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs187473846		P-0010457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	312	325	0	ENST00000277541.6:c.368C>T	p.Thr123Met	p.T123M	ENST00000277541	NM_017617.3	123	aCg/aTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0010457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	236	195	0	ENST00000269305.4:c.374C>G	p.Thr125Arg	p.T125R	ENST00000269305	NM_001126112.2	125	aCg/aGg						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21555706	21555706	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	340	360	0	ENST00000382592.4:c.2564A>G	p.Lys855Arg	p.K855R	ENST00000382592	NM_014572.2	855	aAg/aGg						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	29005422	29005422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	155	244	0	ENST00000282397.4:c.839G>T	p.Arg280Leu	p.R280L	ENST00000282397	NM_002019.4	280	cGa/cTa						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41215373	41215373	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0010457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	302	262	0	ENST00000357654.3:c.5170A>T	p.Lys1724Ter	p.K1724*	ENST00000357654	NM_007294.3	1724	Aaa/Taa						NEWRECORD																																																																									
TOP1	7150	MSKCC	GRCh37	20	39721135	39721135	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	317	304	0	ENST00000361337.2:c.638A>G	p.Glu213Gly	p.E213G	ENST00000361337	NM_003286.2	213	gAa/gGa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579718	7579718	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	214	769	2	ENST00000269305.4:c.78delT	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	26	ctT/ct						NEWRECORD																																																																									
MAPK3	5595	MSKCC	GRCh37	16	30133193	30133193	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	95	347	1	ENST00000263025.4:c.305G>C	p.Gly102Ala	p.G102A	ENST00000263025	NM_002746.2	102	gGc/gCc						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41246509	41246509	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	205	617	0	ENST00000357654.3:c.1039del	p.Leu347CysfsTer27	p.L347Cfs*27	ENST00000357654	NM_007294.3	347	Ctg/tg						NEWRECORD																																																																									
NKX3-1	4824	MSKCC	GRCh37	8	23538906	23538906	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	145	418	4	ENST00000380871.4:c.533A>G	p.Lys178Arg	p.K178R	ENST00000380871	NM_006167.3	178	aAg/aGg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	273	470	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108121591	108121591	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	74	513	0	ENST00000278616.4:c.1399G>C	p.Asp467His	p.D467H	ENST00000278616	NM_000051.3	467	Gac/Cac						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48951140	48951140	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	153	421	0	ENST00000267163.4:c.1304del	p.Gly435AspfsTer22	p.G435Dfs*22	ENST00000267163	NM_000321.2	434	gtG/gt						NEWRECORD																																																																									
YES1	7525	MSKCC	GRCh37	18	743307	743307	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1683	121	661	0	ENST00000314574.4:c.833G>T	p.Arg278Leu	p.R278L	ENST00000314574	NM_005433.3	278	cGa/cTa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	547	692	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135797205	135797205	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0012148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	513	719	0	ENST00000298552.3:c.663+1G>T		p.X221_splice	ENST00000298552	NM_001162426.1	221							NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45396897	45396897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	248	621	0	ENST00000262160.6:c.275C>T	p.Thr92Met	p.T92M	ENST00000262160	NM_005901.5	92	aCg/aTg						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67589216	67589251	+	inframe_deletion	In_Frame_Del	DEL	GTTGAATTAATAAACCACTACCGGAATGAATCTCTA	GTTGAATTAATAAACCACTACCGGAATGAATCTCTA	-			P-0012148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	629	630	2	ENST00000274335.5:c.1205_1240del	p.Val402_Leu413del	p.V402_L413del	ENST00000274335		402	GTTGAATTAATAAACCACTACCGGAATGAATCTCTA/-						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27107135	27107135	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0012944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	175	289	0	ENST00000324856.7:c.6746C>G	p.Ser2249Ter	p.S2249*	ENST00000324856	NM_006015.4	2249	tCa/tGa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0014707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	295	803	3	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49444690	49444690	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	93	879	0	ENST00000301067.7:c.2776T>A	p.Ser926Thr	p.S926T	ENST00000301067	NM_003482.3	926	Tcg/Acg						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91293103	91293103	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	40	505	0	ENST00000355112.3:c.605A>G	p.Asn202Ser	p.N202S	ENST00000355112	NM_000057.2	202	aAc/aGc						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15271760	15271776	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	GTGCCCCAGCCGCCGGG	GTGCCCCAGCCGCCGGG	-			P-0014707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	247	916	0	ENST00000263388.2:c.6663_6679del	p.Tyr2221Ter	p.Y2221*	ENST00000263388	NM_000435.2	2221	taCCCGGCGGCTGGGGCACac/taac						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15375362	15375362	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	46	600	0	ENST00000263377.2:c.1065G>C	p.Lys355Asn	p.K355N	ENST00000263377	NM_058243.2	355	aaG/aaC						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185191446	185191446	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	105	796	0	ENST00000265026.3:c.2327C>G	p.Thr776Arg	p.T776R	ENST00000265026	NM_004721.4	776	aCg/aGg						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5050701	5050701	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	28	398	0	ENST00000381652.3:c.484G>T	p.Val162Leu	p.V162L	ENST00000381652	NM_004972.3	162	Gtg/Ttg						NEWRECORD																																																																									
FANCC	2176	MSKCC	GRCh37	9	97869366	97869376	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGATCGTGT	GGCGATCGTGT	-			P-0014707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	90	559	0	ENST00000289081.3:c.1505_1515del	p.His502LeufsTer12	p.H502Lfs*12	ENST00000289081	NM_000136.2	502	cACACGATCGCC/c						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133760916	133760916	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	92	862	1	ENST00000318560.5:c.3239A>G	p.Lys1080Arg	p.K1080R	ENST00000318560	NM_005157.4	1080	aAg/aGg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	1062	501	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11308139	11308139	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	216	423	0	ENST00000361445.4:c.853G>C	p.Glu285Gln	p.E285Q	ENST00000361445	NM_004958.3	285	Gaa/Caa						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108129803	108129803	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0014724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	155	292	0	ENST00000278616.4:c.2466+1G>T		p.X822_splice	ENST00000278616	NM_000051.3	822							NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118344186	118344186	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	303	557	0	ENST00000534358.1:c.2312C>A	p.Thr771Asn	p.T771N	ENST00000534358	NM_005933.3	771	aCc/aAc						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061433	38061433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	131	485	2	ENST00000250448.2:c.556G>A	p.Ala186Thr	p.A186T	ENST00000250448	NM_004496.3	186	Gcg/Acg						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42042205	42042205	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	234	554	2	ENST00000219905.7:c.6402del	p.Phe2134LeufsTer45	p.F2134Lfs*45	ENST00000219905	NM_001164273.1	2134	Ttt/tt						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9943743	9943743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	243	523	0	ENST00000330684.3:c.1198G>A	p.Glu400Lys	p.E400K	ENST00000330684	NM_001134407.1	400	Gag/Aag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	367	510	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	191	568	1	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	172	626	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg						NEWRECORD																																																																									
CASP8	841	MSKCC	GRCh37	2	202149616	202149616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	121	383	0	ENST00000358485.4:c.1057G>A	p.Glu353Lys	p.E353K	ENST00000358485	NM_001080125.1	353	Gag/Aag						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100999492	100999492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	277	949	0	ENST00000325455.5:c.310C>G	p.Pro104Ala	p.P104A	ENST00000325455	NM_001202474.3	104	Cca/Gca						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59870990	59870990	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	101	431	0	ENST00000259008.2:c.1441G>T	p.Gly481Cys	p.G481C	ENST00000259008	NM_032043.2	481	Ggt/Tgt						NEWRECORD																																																																									
WHSC1L1	54904	MSKCC	GRCh37	8	38187387	38187387	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	86	395	0	ENST00000317025.8:c.1090G>T	p.Glu364Ter	p.E364*	ENST00000317025	NM_023034.1	364	Gaa/Taa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	55	419	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18552670	18552670	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	48	611	0	ENST00000266497.5:c.2081T>C	p.Val694Ala	p.V694A	ENST00000266497		694	gTc/gCc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579309	7579312	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACC	GACC	-			P-0012535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	66	325	1	ENST00000269305.4:c.375_375+3del		p.X125_splice	ENST00000269305	NM_001126112.2	125							NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66941796	66941796	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	30	251	0	ENST00000374690.3:c.2440T>G	p.Phe814Val	p.F814V	ENST00000374690	NM_000044.3	814	Ttc/Gtc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0014499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	64	793	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	119	428	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18544079	18544079	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	117	451	0	ENST00000266497.5:c.1896G>T	p.Trp632Cys	p.W632C	ENST00000266497		632	tgG/tgT						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73340179	73340179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	79	527	0	ENST00000377767.4:c.1901C>T	p.Ser634Phe	p.S634F	ENST00000377767	NM_014953.3	634	tCt/tTt						NEWRECORD																																																																									
FUBP1	8880	MSKCC	GRCh37	1	78428507	78428507	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	154	699	0	ENST00000370768.2:c.1292G>T	p.Gly431Val	p.G431V	ENST00000370768	NM_003902.3	431	gGc/gTc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41076917	41076917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	98	758	0	ENST00000373198.4:c.1503G>T	p.Lys501Asn	p.K501N	ENST00000373198	NM_133170.3	501	aaG/aaT						NEWRECORD																																																																									
MUTYH	4595	MSKCC	GRCh37	1	45798275	45798275	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	71	534	0	ENST00000372115.3:c.619G>T	p.Gly207Trp	p.G207W	ENST00000372115	NM_001048171.1	207	Ggg/Tgg						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120462180	120462180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	73	513	0	ENST00000256646.2:c.5536G>A	p.Asp1846Asn	p.D1846N	ENST00000256646	NM_024408.3	1846	Gat/Aat						NEWRECORD																																																																									
MYCN	4613	MSKCC	GRCh37	2	16085687	16085687	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	183	629	0	ENST00000281043.3:c.863C>G	p.Ser288Cys	p.S288C	ENST00000281043	NM_005378.4	288	tCc/tGc						NEWRECORD																																																																									
XPO1	7514	MSKCC	GRCh37	2	61717860	61717860	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	98	837	2	ENST00000401558.2:c.1939C>T	p.Gln647Ter	p.Q647*	ENST00000401558	NM_003400.3	647	Caa/Taa						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215610499	215610499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	153	696	1	ENST00000260947.4:c.1757G>T	p.Ser586Ile	p.S586I	ENST00000260947	NM_000465.2	586	aGt/aTt						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47164421	47164421	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	163	586	0	ENST00000409792.3:c.1705T>C	p.Phe569Leu	p.F569L	ENST00000409792	NM_014159.6	569	Ttt/Ctt						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55136904	55136904	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	138	605	0	ENST00000257290.5:c.1226T>C	p.Leu409Pro	p.L409P	ENST00000257290	NM_006206.4	409	cTg/cCg						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55564524	55564524	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	70	519	0	ENST00000288135.5:c.412C>A	p.Leu138Ile	p.L138I	ENST00000288135	NM_000222.2	138	Ctc/Atc						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187532858	187532858	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	139	553	2	ENST00000441802.2:c.9535G>T	p.Gly3179Ter	p.G3179*	ENST00000441802	NM_005245.3	3179	Gga/Tga						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	93965709	93965709	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	97	892	0	ENST00000369303.4:c.2219G>C	p.Arg740Thr	p.R740T	ENST00000369303	NM_004440.3	740	aGa/aCa						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	149982885	149982885	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139248642		P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	128	536	0	ENST00000253339.5:c.3373C>T	p.Arg1125Cys	p.R1125C	ENST00000253339		1125	Cgc/Tgc						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152332814	152332814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	196	774	0	ENST00000206249.3:c.1120G>T	p.Asp374Tyr	p.D374Y	ENST00000206249	NM_000125.3	374	Gat/Tat						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41729844	41729844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	209	844	2	ENST00000242208.4:c.685C>T	p.Arg229Trp	p.R229W	ENST00000242208	NM_002192.2	229	Cgg/Tgg						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41739756	41739756	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	155	918	0	ENST00000242208.4:c.217G>C	p.Asp73His	p.D73H	ENST00000242208	NM_002192.2	73	Gat/Cat						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81350107	81350107	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	145	749	0	ENST00000222390.5:c.1225G>T	p.Gly409Ter	p.G409*	ENST00000222390	NM_000601.4	409	Gga/Tga						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508146	106508146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	40	258	0	ENST00000359195.3:c.140G>T	p.Ser47Ile	p.S47I	ENST00000359195	NM_002649.2	47	aGc/aTc						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140482900	140482900	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	95	678	0	ENST00000288602.6:c.1235A>G	p.Asn412Ser	p.N412S	ENST00000288602	NM_004333.4	412	aAc/aGc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151878241	151878241	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	158	618	1	ENST00000262189.6:c.6704G>T	p.Arg2235Met	p.R2235M	ENST00000262189	NM_170606.2	2235	aGg/aTg						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133759502	133759502	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	88	805	0	ENST00000318560.5:c.1825A>T	p.Lys609Ter	p.K609*	ENST00000318560	NM_005157.4	609	Aag/Tag						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43609075	43609075	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	89	866	0	ENST00000355710.3:c.1831T>A	p.Cys611Ser	p.C611S	ENST00000355710	NM_020975.4	611	Tgc/Agc						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64574511	64574511	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	86	674	1	ENST00000337652.1:c.899G>T	p.Arg300Leu	p.R300L	ENST00000337652	NM_130803.2	300	cGg/cTg						NEWRECORD																																																																									
FGF3	2248	MSKCC	GRCh37	11	69625319	69625319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	81	758	2	ENST00000334134.2:c.474C>A	p.Asn158Lys	p.N158K	ENST00000334134	NM_005247.2	158	aaC/aaA						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108143469	108143469	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	86	924	0	ENST00000278616.4:c.3174G>T	p.Trp1058Cys	p.W1058C	ENST00000278616	NM_000051.3	1058	tgG/tgT						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49425501	49425501	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	96	1054	0	ENST00000301067.7:c.12987G>C	p.Gln4329His	p.Q4329H	ENST00000301067	NM_003482.3	4329	caG/caC						NEWRECORD																																																																									
SMARCD1	6602	MSKCC	GRCh37	12	50484043	50484043	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	68	646	0	ENST00000394963.4:c.893A>C	p.Asp298Ala	p.D298A	ENST00000394963	NM_003076.4	298	gAc/gCc						NEWRECORD																																																																									
PTPN11	5781	MSKCC	GRCh37	12	112892369	112892369	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	71	629	0	ENST00000351677.2:c.527A>T	p.Glu176Val	p.E176V	ENST00000351677	NM_002834.3	176	gAa/gTa						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88576193	88576193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	62	569	0	ENST00000360948.2:c.1480C>A	p.Leu494Met	p.L494M	ENST00000360948	NM_001012338.2	494	Ctg/Atg						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89877476	89877476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	84	644	1	ENST00000389301.3:c.287C>T	p.Ser96Phe	p.S96F	ENST00000389301	NM_000135.2	96	tCt/tTt						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41223061	41223061	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	98	856	1	ENST00000357654.3:c.4870G>T	p.Gly1624Trp	p.G1624W	ENST00000357654	NM_007294.3	1624	Ggg/Tgg						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45375004	45375004	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	62	485	0	ENST00000262160.6:c.839A>T	p.Tyr280Phe	p.Y280F	ENST00000262160	NM_005901.5	280	tAt/tTt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1219413	1219413	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	115	488	0	ENST00000326873.7:c.464+1G>T		p.X155_splice	ENST00000326873	NM_000455.4	155							NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11134306	11134306	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	109	444	0	ENST00000344626.4:c.2972A>C	p.Lys991Thr	p.K991T	ENST00000344626	NM_003072.3	991	aAg/aCg						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9561204	9561204	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	332	725	2	ENST00000353224.5:c.578C>A	p.Ala193Asp	p.A193D	ENST00000353224	NM_177990.2	193	gCc/gAc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40739100	40739100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	187	526	3	ENST00000373198.4:c.3184C>T	p.Arg1062Cys	p.R1062C	ENST00000373198	NM_133170.3	1062	Cgc/Tgc						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44938537	44938537	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	98	388	0	ENST00000377967.4:c.3085C>G	p.His1029Asp	p.H1029D	ENST00000377967	NM_021140.2	1029	Cat/Gat						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	41	538	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	345	286	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
HIST1H3H	8357	MSKCC	GRCh37	6	27778071	27778071	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	366	1312	1	ENST00000369163.2:c.220G>A	p.Glu74Lys	p.E74K	ENST00000369163	NM_003536.2	74	Gag/Aag						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151874803	151874803	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	165	394	0	ENST00000262189.6:c.7735G>C	p.Gly2579Arg	p.G2579R	ENST00000262189	NM_170606.2	2579	Ggc/Cgc						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187629537	187629538	+	missense_variant	Missense_Mutation	DNP	AC	AC	CT			P-0013915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	185	568	0	ENST00000441802.2:c.1444_1445delinsAG	p.Val482Ser	p.V482S	ENST00000441802	NM_005245.3	482	GTc/AGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0012787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	26	322	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0012787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	10	403	1	ENST00000256078.4:c.34_35delinsAT	p.Gly12Ile	p.G12I	ENST00000256078	NM_033360.2	12	GGt/ATt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108165756	108165756	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	74	323	0	ENST00000278616.4:c.4879C>T	p.Gln1627Ter	p.Q1627*	ENST00000278616	NM_000051.3	1627	Cag/Tag						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2121873	2121873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	27	452	2	ENST00000219476.3:c.2035G>A	p.Val679Met	p.V679M	ENST00000219476	NM_000548.3	679	Gtg/Atg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0013298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	94	478	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32914808	32914808	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	126	1143	0	ENST00000380152.3:c.6316C>A	p.Leu2106Ile	p.L2106I	ENST00000380152		2106	Ctt/Att						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2222191	2222191	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	44	717	0	ENST00000398665.3:c.3023C>G	p.Ser1008Cys	p.S1008C	ENST00000398665	NM_032482.2	1008	tCc/tGc						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2223318	2223318	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	41	1035	0	ENST00000398665.3:c.3429C>G	p.Ile1143Met	p.I1143M	ENST00000398665	NM_032482.2	1143	atC/atG						NEWRECORD																																																																									
TOP1	7150	MSKCC	GRCh37	20	39742704	39742704	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	72	644	0	ENST00000361337.2:c.1547C>G	p.Pro516Arg	p.P516R	ENST00000361337	NM_003286.2	516	cCa/cGa						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	163	403	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	235	490	0	ENST00000269305.4:c.814G>C	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ctg						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47139513	47139513	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	97	822	1	ENST00000409792.3:c.5074G>T	p.Glu1692Ter	p.E1692*	ENST00000409792	NM_014159.6	1692	Gaa/Taa						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47158245	47158245	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0010257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	82	240	0	ENST00000409792.3:c.4455-1G>T		p.X1485_splice	ENST00000409792	NM_014159.6	1485							NEWRECORD																																																																									
EIF4A2	1974	MSKCC	GRCh37	3	186502766	186502766	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1050	331	889	0	ENST00000323963.5:c.224C>A	p.Ala75Asp	p.A75D	ENST00000323963		75	gCt/gAt						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151878657	151878657	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	159	478	0	ENST00000262189.6:c.6288G>T	p.Gln2096His	p.Q2096H	ENST00000262189	NM_170606.2	2096	caG/caT						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64577173	64577173	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1236	337	714	0	ENST00000337652.1:c.409C>G	p.Arg137Gly	p.R137G	ENST00000337652	NM_130803.2	137	Cgg/Ggg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48573597	48573597	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	170	408	0	ENST00000342988.3:c.181A>G	p.Ile61Val	p.I61V	ENST00000342988	NM_005359.5	61	Ata/Gta						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2222350	2222350	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	62	269	0	ENST00000398665.3:c.3182C>G	p.Ser1061Cys	p.S1061C	ENST00000398665	NM_032482.2	1061	tCc/tGc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8517938	8517939	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0010257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	156	750	2	ENST00000356435.5:c.1452_1453delinsAA	p.Gln485Lys	p.Q485K	ENST00000356435		484	ccCCag/ccAAag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	797	506	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0010636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	223	239	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782144		P-0010636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	347	467	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70344171	70344171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	560	304	0	ENST00000374080.3:c.1907C>T	p.Pro636Leu	p.P636L	ENST00000374080		636	cCc/cTc						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76890167	76890167	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	797	355	0	ENST00000373344.5:c.4727G>T	p.Cys1576Phe	p.C1576F	ENST00000373344	NM_000489.3	1576	tGt/tTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	176	692	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37880219	37880220	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC			P-0013796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	169	761	0	ENST00000269571.5:c.2263_2264delTTinsCC	p.Leu755Pro	p.L755P	ENST00000269571		755	TTg/CCg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7573996	7573996	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	86	787	0	ENST00000269305.4:c.1031T>C	p.Leu344Pro	p.L344P	ENST00000269305	NM_001126112.2	344	cTg/cCg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	72	384	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0010601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	42	344	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0010601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	79	376	0	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125							NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45003799	45003799	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	48	493	0	ENST00000558401.1:c.55G>T	p.Glu19Ter	p.E19*	ENST00000558401	NM_004048.2	19	Gag/Tag						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11174917	11174917	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1095	86	581	0	ENST00000361445.4:c.7117G>T	p.Glu2373Ter	p.E2373*	ENST00000361445	NM_004958.3	2373	Gag/Tag						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180053120	180053120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	78	533	0	ENST00000261937.6:c.1249G>T	p.Val417Leu	p.V417L	ENST00000261937	NM_182925.4	417	Gtg/Ttg						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106509951	106509951	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	54	584	1	ENST00000359195.3:c.1945G>T	p.Glu649Ter	p.E649*	ENST00000359195	NM_002649.2	649	Gag/Tag						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140434518	140434518	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	39	405	0	ENST00000288602.6:c.2180G>C	p.Ser727Thr	p.S727T	ENST00000288602	NM_004333.4	727	aGt/aCt						NEWRECORD																																																																									
FGF3	2248	MSKCC	GRCh37	11	69625152	69625152	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	55	573	0	ENST00000334134.2:c.641A>G	p.Lys214Arg	p.K214R	ENST00000334134	NM_005247.2	214	aAg/aGg						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	29007958	29007959	+	stop_gained,splice_region_variant	Nonsense_Mutation	DNP	CA	CA	AT			P-0010601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	38	356	0	ENST00000282397.4:c.810_811delinsAT	p.Asp270_Glu271delinsGluTer	p.D270_E271delinsE*	ENST00000282397	NM_002019.4	270	gaTGaa/gaATaa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	51	589	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0013220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	26	506	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0013220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	20	256	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5212230	5212230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367918810		P-0013220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	39	587	0	ENST00000357368.4:c.4801G>A	p.Val1601Ile	p.V1601I	ENST00000357368	NM_002850.3	1601	Gtc/Atc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	21	617	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0014140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	25	543	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
SH2B3	10019	MSKCC	GRCh37	12	111856469	111856469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	46	664	1	ENST00000341259.2:c.520G>A	p.Ala174Thr	p.A174T	ENST00000341259	NM_005475.2	174	Gcc/Acc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	88	354	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0014848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	563	653	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	447	363	0	ENST00000257430.4:c.4364delA	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41400170	41400170	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1676	225	553	0	ENST00000373198.4:c.589C>T	p.Arg197Ter	p.R197*	ENST00000373198	NM_133170.3	197	Cga/Tga						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27101257	27101257	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	663	535	0	ENST00000324856.7:c.4539del	p.Ser1513ArgfsTer14	p.S1513Rfs*14	ENST00000324856	NM_006015.4	1513	agC/ag						NEWRECORD																																																																									
MAPK3	5595	MSKCC	GRCh37	16	30129465	30129465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	341	559	0	ENST00000263025.4:c.563C>T	p.Ala188Val	p.A188V	ENST00000263025	NM_002746.2	188	gCc/gTc						NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50909518	50909518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1170	114	658	5	ENST00000440232.2:c.1322C>T	p.Thr441Met	p.T441M	ENST00000440232	NM_002691.3	441	aCg/aTg						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	142949984	142949984	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	227	508	0	ENST00000262992.4:c.2726C>G	p.Pro909Arg	p.P909R	ENST00000262992	NM_001101669.1	909	cCc/cGc						NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056059	26056059	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	230	275	0	ENST00000343677.2:c.598C>A	p.Pro200Thr	p.P200T	ENST00000343677	NM_005319.3	200	Ccc/Acc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0014878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	298	641	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55210075	55210075	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	322	612	0	ENST00000275493.2:c.185T>G	p.Leu62Arg	p.L62R	ENST00000275493	NM_005228.3	62	cTt/cGt						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41729606	41729606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	183	461	0	ENST00000242208.4:c.923G>A	p.Arg308His	p.R308H	ENST00000242208	NM_002192.2	308	cGt/cAt						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65325807	65325807	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	175	495	0	ENST00000342505.4:c.1315G>C	p.Gly439Arg	p.G439R	ENST00000342505	NM_002227.2	439	Ggc/Cgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578483	7578483	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	472	1046	1	ENST00000269305.4:c.447del	p.Thr150HisfsTer20	p.T150Hfs*20	ENST00000269305	NM_001126112.2	149	tcC/tc						NEWRECORD																																																																									
PIK3CB	5291	MSKCC	GRCh37	3	138374244	138374244	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	185	844	0	ENST00000289153.2:c.3200A>T	p.Asp1067Val	p.D1067V	ENST00000289153	NM_006219.2	1067	gAc/gTc						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42791393	42791393	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0013988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	96	766	0	ENST00000575354.2:c.452+1G>A		p.X151_splice	ENST00000575354	NM_015125.3	151							NEWRECORD																																																																									
SH2B3	10019	MSKCC	GRCh37	12	111885919	111885919	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1122	221	1212	1	ENST00000341259.2:c.1541G>T	p.Gly514Val	p.G514V	ENST00000341259	NM_005475.2	514	gGt/gTt						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37872138	37872138	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1294	189	922	0	ENST00000269571.5:c.1459del	p.Arg487GlyfsTer69	p.R487Gfs*69	ENST00000269571		487	Cgg/gg						NEWRECORD																																																																									
CD79A	973	MSKCC	GRCh37	19	42383228	42383228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	235	1187	4	ENST00000221972.3:c.248C>T	p.Pro83Leu	p.P83L	ENST00000221972	NM_021601.3	83	cCg/cTg						NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50910432	50910432	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0013988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	171	1131	0	ENST00000440232.2:c.1686+1G>T		p.X562_splice	ENST00000440232	NM_002691.3	562							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	434	568	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15295210	15295210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1261	234	993	0	ENST00000263388.2:c.2462G>A	p.Gly821Asp	p.G821D	ENST00000263388	NM_000435.2	821	gGc/gAc						NEWRECORD																																																																									
RRAGC	64121	MSKCC	GRCh37	1	39322674	39322674	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	88	543	1	ENST00000373001.3:c.318T>A	p.Asn106Lys	p.N106K	ENST00000373001	NM_022157.3	106	aaT/aaA						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8111550	8111550	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1297	178	577	0	ENST00000346208.3:c.1036A>G	p.Lys346Glu	p.K346E	ENST00000346208		346	Aag/Gag						NEWRECORD																																																																									
HNF1A	6927	MSKCC	GRCh37	12	121432154	121432154	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	365	617	1	ENST00000257555.6:c.901G>T	p.Ala301Ser	p.A301S	ENST00000257555		301	Gct/Tct						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32912885	32912885	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	257	366	0	ENST00000380152.3:c.4393G>C	p.Glu1465Gln	p.E1465Q	ENST00000380152		1465	Gaa/Caa						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	10274192	10274192	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	128	422	0	ENST00000330684.3:c.77C>A	p.Ala26Glu	p.A26E	ENST00000330684	NM_001134407.1	26	gCg/gAg						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29556992	29556992	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0014562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	121	145	0	ENST00000358273.4:c.2990G>T	p.Arg997Met	p.R997M	ENST00000358273	NM_001042492.2	997	aGg/aTg						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29679274	29679274	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0014562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	247	340	0	ENST00000358273.4:c.7458-1G>T		p.X2486_splice	ENST00000358273	NM_001042492.2	2486							NEWRECORD																																																																									
STAT5B	6777	MSKCC	GRCh37	17	40370309	40370309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	555	716	0	ENST00000293328.3:c.1029G>T	p.Lys343Asn	p.K343N	ENST00000293328	NM_012448.3	343	aaG/aaT						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15367939	15367939	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	197	704	0	ENST00000263377.2:c.1387G>T	p.Glu463Ter	p.E463*	ENST00000263377	NM_058243.2	463	Gag/Tag						NEWRECORD																																																																									
GSK3B	2932	MSKCC	GRCh37	3	119624685	119624685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1245	283	471	0	ENST00000316626.5:c.730G>T	p.Gly244Cys	p.G244C	ENST00000316626		244	Ggc/Tgc						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86668007	86668012	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CGTCAG	CGTCAG	-			P-0014562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	128	299	0	ENST00000274376.6:c.1771_1776del	p.Arg591_Gln592del	p.R591_Q592del	ENST00000274376	NM_002890.2	591	CGTCAG/-						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117647499	117647499	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	225	463	0	ENST00000368508.3:c.5445C>G	p.Cys1815Trp	p.C1815W	ENST00000368508	NM_002944.2	1815	tgC/tgG						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	167	521	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67590380	67590380	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	113	345	2	ENST00000274335.5:c.1442G>T	p.Arg481Met	p.R481M	ENST00000274335		481	aGg/aTg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220579	1220579	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	190	530	0	ENST00000326873.7:c.598-1G>T		p.X200_splice	ENST00000326873	NM_000455.4	200							NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600415	10600415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	110	747	0	ENST00000171111.5:c.1440del	p.Thr481GlnfsTer19	p.T481Qfs*19	ENST00000171111	NM_203500.1	480	ggG/gg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0010393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	35	583	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189586502	189586502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	19	232	0	ENST00000264731.3:c.1126C>T	p.Arg376Cys	p.R376C	ENST00000264731	NM_003722.4	376	Cgc/Tgc						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134898711	134898711	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	30	522	0	ENST00000398015.3:c.1769G>T	p.Gly590Val	p.G590V	ENST00000398015	NM_004441.4	590	gGg/gTg						NEWRECORD																																																																									
KLF4	9314	MSKCC	GRCh37	9	110250515	110250515	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	16	194	0	ENST00000374672.4:c.160C>G	p.Leu54Val	p.L54V	ENST00000374672	NM_004235.4	54	Ctt/Gtt						NEWRECORD																																																																									
IGF2	3481	MSKCC	GRCh37	11	2154880	2154880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	67	530	1	ENST00000434045.2:c.341G>A	p.Arg114His	p.R114H	ENST00000434045	NM_001127598.1	114	cGt/cAt						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53240003	53240003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	22	347	1	ENST00000375401.3:c.1438C>T	p.Pro480Ser	p.P480S	ENST00000375401	NM_004187.3	480	Ccg/Tcg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	144	568	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55372337	55372337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	116	801	0	ENST00000297316.4:c.1027C>T	p.Arg343Trp	p.R343W	ENST00000297316	NM_022454.3	343	Cgg/Tgg						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56155721	56155722	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0014375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	154	395	0	ENST00000399503.3:c.816_817del	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	271	agAAaa/agaa						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56189455	56189455	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	149	547	0	ENST00000399503.3:c.4487G>C	p.Arg1496Thr	p.R1496T	ENST00000399503	NM_005921.1	1496	aGa/aCa						NEWRECORD																																																																									
WHSC1L1	54904	MSKCC	GRCh37	8	38189047	38189047	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	175	770	0	ENST00000317025.8:c.967C>A	p.His323Asn	p.H323N	ENST00000317025	NM_023034.1	323	Cat/Aat						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	754	293	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0011096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	749	303	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1112	294	247	0	ENST00000349496.5:c.97T>G	p.Ser33Ala	p.S33A	ENST00000349496	NM_001904.3	33	Tct/Gct						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72830136	72830136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1307	412	347	1	ENST00000268489.5:c.6445C>T	p.Arg2149Cys	p.R2149C	ENST00000268489	NM_006885.3	2149	Cgc/Tgc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	162	640	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0010022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	199	548	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0010022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	92	513	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32170088	32170088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	169	542	0	ENST00000375023.3:c.3520G>A	p.Gly1174Arg	p.G1174R	ENST00000375023	NM_004557.3	1174	Gga/Aga						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0010022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	119	617	1	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175232	112175232	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	199	330	0	ENST00000257430.4:c.3942del	p.Arg1314SerfsTer7	p.R1314Sfs*7	ENST00000257430	NM_000038.5	1314	aGg/ag						NEWRECORD																																																																									
FAM46C	54855	MSKCC	GRCh37	1	118166105	118166105	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1103	81	696	1	ENST00000369448.3:c.615C>A	p.His205Gln	p.H205Q	ENST00000369448	NM_017709.3	205	caC/caA						NEWRECORD																																																																									
TSHR	7253	MSKCC	GRCh37	14	81610030	81610030	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	56	443	0	ENST00000298171.2:c.1628T>C	p.Val543Ala	p.V543A	ENST00000298171	NM_000369.2	543	gTt/gCt						NEWRECORD																																																																									
GATA1	2623	MSKCC	GRCh37	X	48651643	48651643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1533	515	990	0	ENST00000376670.3:c.809G>A	p.Arg270Gln	p.R270Q	ENST00000376670	NM_002049.3	270	cGg/cAg						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	260	555	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0010968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	610	439	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112170652	112170652	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	129	339	1	ENST00000257430.4:c.1748C>A	p.Ser583Ter	p.S583*	ENST00000257430	NM_000038.5	583	tCa/tAa						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128845125	128845125	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	234	537	0	ENST00000249373.3:c.619T>G	p.Tyr207Asp	p.Y207D	ENST00000249373	NM_005631.4	207	Tac/Gac						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175749	112175753	+	frameshift_variant	Frame_Shift_Del	DEL	TACTT	TACTT	-			P-0010968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	114	281	0	ENST00000257430.4:c.4460_4464del	p.Thr1487IlefsTer25	p.T1487Ifs*25	ENST00000257430	NM_000038.5	1486	gaTACTTta/gata						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0010296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	45	367	1	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061261	38061264	+	missense_variant	Missense_Mutation	ONP	TAGG	TAGG	GAGC			P-0010296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1224	106	637	0	ENST00000250448.2:c.725_728delinsGCTC	p.Ser242_Tyr243delinsCysSer	p.S242_Y243delinsCS	ENST00000250448	NM_004496.3	242	tCCTAc/tGCTCc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577152	7577154	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ACC	ACC	-			P-0014935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	567	622	0	ENST00000269305.4:c.784_786delGGT	p.Gly262del	p.G262del	ENST00000269305	NM_001126112.2	262	GGT/-						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134967353	134967353	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0014935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	249	494	0	ENST00000398015.3:c.2690+2T>G		p.X897_splice	ENST00000398015	NM_004441.4	897							NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0013531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	205	521	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	73	499	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47041244	47041244	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	205	415	0	ENST00000329236.7:c.1438C>T	p.Gln480Ter	p.Q480*	ENST00000329236	NM_001204466.1	480	Cag/Tag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	218	491	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0013033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1080	150	856	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1293937	1293937	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	92	558	0	ENST00000310581.5:c.1064C>G	p.Thr355Ser	p.T355S	ENST00000310581	NM_198253.2	355	aCt/aGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0010246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	156	571	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	96	411	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48581229	48581229	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	96	452	0	ENST00000342988.3:c.533C>G	p.Ser178Ter	p.S178*	ENST00000342988	NM_005359.5	178	tCa/tGa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0010965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	392	354	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63554660	63554660	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	164	291	0	ENST00000307078.5:c.79C>G	p.Pro27Ala	p.P27A	ENST00000307078	NM_004655.3	27	Cca/Gca						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173835	112173838	+	frameshift_variant	Frame_Shift_Del	DEL	AGAT	AGAT	-			P-0010965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	194	310	0	ENST00000257430.4:c.2547_2550delTAGA	p.Asp849GlufsTer11	p.D849Efs*11	ENST00000257430	NM_000038.5	848	aaAGAT/aa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175770	112175770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	147	252	0	ENST00000257430.4:c.4480delG	p.Glu1494LysfsTer13	p.E1494Kfs*13	ENST00000257430	NM_000038.5	1493	acG/ac						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112111408	112111411	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0011258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	75	607	0	ENST00000257430.4:c.509_512del	p.Asp170ValfsTer4	p.D170Vfs*4	ENST00000257430	NM_000038.5	169	ATAGat/at						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9858738	9858738	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149698593		P-0011258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	61	747	2	ENST00000330684.3:c.2663C>T	p.Thr888Met	p.T888M	ENST00000330684	NM_001134407.1	888	aCg/aTg						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27092823	27092823	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0011258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	96	970	0	ENST00000324856.7:c.2844T>A	p.Tyr948Ter	p.Y948*	ENST00000324856	NM_006015.4	948	taT/taA						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27101195	27101195	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	98	889	1	ENST00000324856.7:c.4477C>T	p.Gln1493Ter	p.Q1493*	ENST00000324856	NM_006015.4	1493	Cag/Tag						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134967254	134967254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	56	796	2	ENST00000398015.3:c.2593C>T	p.Arg865Trp	p.R865W	ENST00000398015	NM_004441.4	865	Cgg/Tgg						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187541295	187541295	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	123	936	1	ENST00000441802.2:c.6445G>T	p.Glu2149Ter	p.E2149*	ENST00000441802	NM_005245.3	2149	Gaa/Taa						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117711006	117711006	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0011258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	36	284	0	ENST00000368508.3:c.1266T>A	p.Tyr422Ter	p.Y422*	ENST00000368508	NM_002944.2	422	taT/taA						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40730874	40730874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	109	825	0	ENST00000373198.4:c.3661A>G	p.Asn1221Asp	p.N1221D	ENST00000373198	NM_133170.3	1221	Aac/Gac						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37618346	37618346	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	90	820	2	ENST00000447079.4:c.26del	p.Gly9AlafsTer48	p.G9Afs*48	ENST00000447079	NM_015083.1	8	Ggg/gg						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70120236	70120239	+	frameshift_variant	Frame_Shift_Del	DEL	ACTC	ACTC	TGA			P-0011258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	338	937	0	ENST00000245479.2:c.1238_1241delinsTGA	p.His413LeufsTer57	p.H413Lfs*57	ENST00000245479	NM_000346.3	413	cACTCg/cTGAg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0014266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	182	509	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0014266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	239	554	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc						NEWRECORD																																																																									
WHSC1	7468	MSKCC	GRCh37	4	1952921	1952921	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	160	460	2	ENST00000382891.5:c.2004T>A	p.Tyr668Ter	p.Y668*	ENST00000382891	NM_133335.3	668	taT/taA						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70357646	70357646	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	274	805	1	ENST00000374080.3:c.5897C>A	p.Pro1966His	p.P1966H	ENST00000374080		1966	cCc/cAc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40770587	40770587	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776338672		P-0013864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	220	460	0	ENST00000373198.4:c.2795G>A	p.Arg932His	p.R932H	ENST00000373198	NM_133170.3	932	cGc/cAc						NEWRECORD																																																																									
PMS1	5378	MSKCC	GRCh37	2	190656579	190656589	+	frameshift_variant	Frame_Shift_Del	DEL	CTCAGATCATC	CTCAGATCATC	-			P-0013864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	218	490	0	ENST00000441310.2:c.44_54del	p.Ser15TyrfsTer12	p.S15Yfs*12	ENST00000441310	NM_000534.4	15	tCTCAGATCATC/t						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187539071	187539071	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0013864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1172	278	681	0	ENST00000441802.2:c.8669C>G	p.Ser2890Ter	p.S2890*	ENST00000441802	NM_005245.3	2890	tCa/tGa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	70	470	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604778	48604778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767383		P-0012133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	41	553	0	ENST00000342988.3:c.1600C>T	p.Gln534Ter	p.Q534*	ENST00000342988	NM_005359.5	534	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0012133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	115	395	0	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33							NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28626704	28626704	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144349858		P-0012133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	41	461	0	ENST00000241453.7:c.592C>T	p.Leu198Phe	p.L198F	ENST00000241453	NM_004119.2	198	Ctt/Ttt						NEWRECORD																																																																									
ETV6	2120	MSKCC	GRCh37	12	12038923	12038923	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009746-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			853	104	511	0	ENST00000396373.4:c.1216A>T	p.Ile406Phe	p.I406F	ENST00000396373	NM_001987.4	406	Att/Ttt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0014437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	95	590	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag						NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913500		P-0014437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	10	270	0	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16199382	16199382	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	34	457	0	ENST00000375759.3:c.155A>G	p.Asp52Gly	p.D52G	ENST00000375759	NM_015001.2	52	gAt/gGt						NEWRECORD																																																																									
IRS1	3667	MSKCC	GRCh37	2	227663239	227663240	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0014437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	67	589	0	ENST00000305123.5:c.215_216delinsAA	p.Ile72Lys	p.I72K	ENST00000305123	NM_005544.2	72	aTC/aAA						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32164142	32164149	+	frameshift_variant	Frame_Shift_Del	DEL	GCGAGCGG	GCGAGCGG	-			P-0014437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	82	483	0	ENST00000375023.3:c.5250_5257del	p.Arg1751SerfsTer7	p.R1751Sfs*7	ENST00000375023	NM_004557.3	1750	gcCCGCTCGCtt/gctt						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53246447	53246447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	52	651	1	ENST00000375401.3:c.535C>T	p.Arg179Cys	p.R179C	ENST00000375401	NM_004187.3	179	Cgt/Tgt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	174	479	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
HIST1H3B	8358	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1280	778	1432	1	ENST00000244661.2:c.316G>A	p.Glu106Lys	p.E106K	ENST00000244661	NM_003537.3	106	Gag/Aag						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27101006	27101006	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	404	667	0	ENST00000324856.7:c.4288C>T	p.Gln1430Ter	p.Q1430*	ENST00000324856	NM_006015.4	1430	Cag/Tag						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52442069	52442069	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	284	458	0	ENST00000460680.1:c.280C>G	p.His94Asp	p.H94D	ENST00000460680	NM_004656.3	94	Cat/Gat						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135771801	135771801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	450	942	0	ENST00000298552.3:c.3316G>A	p.Glu1106Lys	p.E1106K	ENST00000298552	NM_001162426.1	1106	Gag/Aag						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9923324	9923324	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	224	613	0	ENST00000330684.3:c.1963C>A	p.Gln655Lys	p.Q655K	ENST00000330684	NM_001134407.1	655	Caa/Aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	280	714	1	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0013201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	352	500	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11206806	11206806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	349	656	1	ENST00000361445.4:c.4613G>A	p.Arg1538Gln	p.R1538Q	ENST00000361445	NM_004958.3	1538	cGg/cAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175682	112175682	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	72	467	0	ENST00000257430.4:c.4391A>T	p.Glu1464Val	p.E1464V	ENST00000257430	NM_000038.5	1464	gAg/gTg						NEWRECORD																																																																									
HIST1H3A	8350	MSKCC	GRCh37	6	26020751	26020751	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	395	1162	0	ENST00000357647.3:c.34A>G	p.Thr12Ala	p.T12A	ENST00000357647	NM_003529.2	12	Act/Gct						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32410611	32410611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	388	604	2	ENST00000332351.3:c.1547C>T	p.Ala516Val	p.A516V	ENST00000332351	NM_024426.4	516	gCg/gTg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175667	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCTGAAAAG	CTGCTGAAAAG	-			P-0013201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	71	542	0	ENST00000257430.4:c.4376_4386del	p.Thr1459LysfsTer6	p.T1459Kfs*6	ENST00000257430	NM_000038.5	1459	aCTGCTGAAAAG/a						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	171	221	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	213	386	0	ENST00000269305.4:c.659A>C	p.Tyr220Ser	p.Y220S	ENST00000269305	NM_001126112.2	220	tAt/tCt						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47045866	47045879	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACACAGGCCCAAA	CACACAGGCCCAAA	-			P-0011535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	156	312	0	ENST00000329236.7:c.2434-4_2443del		p.X812_splice	ENST00000329236	NM_001204466.1	812							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579556	7579557	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0010523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	158	389	0	ENST00000269305.4:c.130_131del	p.Met44AlafsTer7	p.M44Afs*7	ENST00000269305	NM_001126112.2	44	ATg/g						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	96	402	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209108325	209108325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	62	349	1	ENST00000345146.2:c.524G>T	p.Gly175Val	p.G175V	ENST00000345146	NM_005896.2	175	gGt/gTt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220388	1220388	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	190	579	0	ENST00000326873.7:c.481A>T	p.Ile161Phe	p.I161F	ENST00000326873	NM_000455.4	161	Att/Ttt						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11135066	11135066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	69	454	2	ENST00000344626.4:c.3033G>T	p.Met1011Ile	p.M1011I	ENST00000344626	NM_003072.3	1011	atG/atT						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	19	630	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212248599	212248599	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	45	828	0	ENST00000342788.4:c.3668A>C	p.Lys1223Thr	p.K1223T	ENST00000342788	NM_005235.2	1223	aAg/aCg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0013758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	47	455	1	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125							NEWRECORD																																																																									
YES1	7525	MSKCC	GRCh37	18	756797	756797	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	21	760	0	ENST00000314574.4:c.31A>C	p.Ser11Arg	p.S11R	ENST00000314574	NM_005433.3	11	Agt/Cgt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604748	48604748	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	93	757	0	ENST00000342988.3:c.1570T>G	p.Trp524Gly	p.W524G	ENST00000342988	NM_005359.5	524	Tgg/Ggg						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212426795	212426795	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	29	480	0	ENST00000342788.4:c.2320A>C	p.Ser774Arg	p.S774R	ENST00000342788	NM_005235.2	774	Agt/Cgt						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1294441	1294441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	29	383	1	ENST00000310581.5:c.560C>T	p.Pro187Leu	p.P187L	ENST00000310581	NM_198253.2	187	cCg/cTg						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	94120809	94120810	+	missense_variant	Missense_Mutation	DNP	TG	TG	GT			P-0013758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	41	999	2	ENST00000369303.4:c.241_242delinsAC	p.Gln81Thr	p.Q81T	ENST00000369303	NM_004440.3	81	CAa/ACa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0011342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	73	517	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21970972	21970972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	53	496	0	ENST00000304494.5:c.386A>G	p.Tyr129Cys	p.Y129C	ENST00000304494	NM_000077.4	129	tAc/tGc						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89882319	89882319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	86	787	2	ENST00000389301.3:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000389301	NM_000135.2	52	cGa/cAa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8636757	8636757	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	54	579	0	ENST00000356435.5:c.152C>A	p.Pro51Gln	p.P51Q	ENST00000356435		51	cCa/cAa						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10597417	10597417	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	83	681	0	ENST00000171111.5:c.1786C>T	p.Arg596Ter	p.R596*	ENST00000171111	NM_203500.1	596	Cga/Tga						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524442	44524442	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0011342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	85	524	0	ENST00000291552.4:c.115A>T	p.Lys39Ter	p.K39*	ENST00000291552	NM_006758.2	39	Aaa/Taa						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220580	1220584	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GCACT	GCACT	-			P-0011342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	49	523	0	ENST00000326873.7:c.602_606del	p.Leu201ProfsTer63	p.L201Pfs*63	ENST00000326873	NM_000455.4	200	GCACTg/g						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577075	7577075	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	247	809	0	ENST00000269305.4:c.863delA	p.Asn288IlefsTer57	p.N288Ifs*57	ENST00000269305	NM_001126112.2	288	aAt/at						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175096	112175097	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0013929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	98	399	0	ENST00000257430.4:c.3807_3808delAT	p.Ile1269MetfsTer6	p.I1269Mfs*6	ENST00000257430	NM_000038.5	1269	ATa/a						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30672309	30672309	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1366	132	926	0	ENST00000376406.3:c.4651C>G	p.Pro1551Ala	p.P1551A	ENST00000376406	NM_014641.2	1551	Ccc/Gcc						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508424	106508424	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751449393		P-0013929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	30	254	0	ENST00000359195.3:c.418C>T	p.Arg140Trp	p.R140W	ENST00000359195	NM_002649.2	140	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0010940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	292	377	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207058	1207069	+	inframe_deletion	In_Frame_Del	DEL	ACCTGATGGGGG	ACCTGATGGGGG	-			P-0010940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	228	406	1	ENST00000326873.7:c.151_162del	p.Met51_Leu54del	p.M51_L54del	ENST00000326873	NM_000455.4	49	tACCTGATGGGGGac/tac						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15383759	15383759	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1900	263	532	0	ENST00000263377.2:c.152C>G	p.Ser51Cys	p.S51C	ENST00000263377	NM_058243.2	51	tCc/tGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0014879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	247	947	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt						NEWRECORD																																																																									
ZRSR2	8233	MSKCC	GRCh37	X	15841118	15841118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	116	877	1	ENST00000307771.7:c.1202G>A	p.Arg401His	p.R401H	ENST00000307771	NM_005089.3	401	cGt/cAt						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88670415	88670415	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	89	554	0	ENST00000360948.2:c.1271A>C	p.Lys424Thr	p.K424T	ENST00000360948	NM_001012338.2	424	aAa/aCa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	253	537	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
SUZ12	23512	MSKCC	GRCh37	17	30323815	30323815	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0013369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	183	399	0	ENST00000322652.5:c.1795-2A>T		p.X599_splice	ENST00000322652	NM_015355.2	599							NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0010181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1543	102	467	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0010181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	390	407	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0010181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	192	293	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0010181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	474	533	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8465651	8465651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	228	402	1	ENST00000356435.5:c.3529C>T	p.Arg1177Cys	p.R1177C	ENST00000356435		1177	Cgc/Tgc						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52678763	52678763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	105	426	0	ENST00000394830.3:c.856G>A	p.Glu286Lys	p.E286K	ENST00000394830	NM_018313.4	286	Gaa/Aaa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187549863	187549863	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	110	367	0	ENST00000441802.2:c.4378A>G	p.Lys1460Glu	p.K1460E	ENST00000441802	NM_005245.3	1460	Aag/Gag						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39934183	39934183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1339	278	570	1	ENST00000378444.4:c.416G>A	p.Gly139Glu	p.G139E	ENST00000378444	NM_001123385.1	139	gGa/gAa						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061193	38061193	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012304-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	35	253	0	ENST00000250448.2:c.796T>C	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	Ttc/Ctc						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0012591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	119	395	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720875	89720875	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0012591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	84	195	0	ENST00000371953.3:c.1026G>T	p.Lys342Asn	p.K342N	ENST00000371953	NM_000314.4	342	aaG/aaT						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0012591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	396	534	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115701	8115704	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GATT	GATT	A			P-0012591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	119	391	0	ENST00000346208.3:c.1048-1_1050delinsA		p.X350_splice	ENST00000346208		350							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	214	268	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	118	264	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt						NEWRECORD																																																																									
PMS2	5395	MSKCC	GRCh37	7	6043374	6043374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	38	65	0	ENST00000265849.7:c.300G>T	p.Gln100His	p.Q100H	ENST00000265849	NM_000535.5	100	caG/caT						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508442	106508442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	67	99	0	ENST00000359195.3:c.436G>A	p.Glu146Lys	p.E146K	ENST00000359195	NM_002649.2	146	Gag/Aag						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133738372	133738372	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	107	220	1	ENST00000318560.5:c.772G>T	p.Glu258Ter	p.E258*	ENST00000318560	NM_005157.4	258	Gag/Tag						NEWRECORD																																																																									
FGFR2	2263	MSKCC	GRCh37	10	123274704	123274704	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	173	348	0	ENST00000358487.5:c.1214A>G	p.Lys405Arg	p.K405R	ENST00000358487	NM_000141.4	405	aAg/aGg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108178712	108178712	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	54	128	0	ENST00000278616.4:c.5762+1G>A		p.X1921_splice	ENST00000278616	NM_000051.3	1921							NEWRECORD																																																																									
CBL	867	MSKCC	GRCh37	11	119170371	119170371	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	176	364	0	ENST00000264033.4:c.2601G>T	p.Gln867His	p.Q867H	ENST00000264033	NM_005188.3	867	caG/caT						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16046996	16046996	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	164	284	0	ENST00000268712.3:c.1097G>C	p.Gly366Ala	p.G366A	ENST00000268712	NM_006311.3	366	gGa/gCa						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42794623	42794623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	38	357	0	ENST00000575354.2:c.1703C>T	p.Ala568Val	p.A568V	ENST00000575354	NM_015125.3	568	gCg/gTg						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36252865	36252865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	163	263	0	ENST00000300305.3:c.497G>T	p.Arg166Leu	p.R166L	ENST00000300305		166	cGa/cTa						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53225146	53225146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	212	540	1	ENST00000375401.3:c.3072G>T	p.Glu1024Asp	p.E1024D	ENST00000375401	NM_004187.3	1024	gaG/gaT						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76855939	76855939	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	103	464	0	ENST00000373344.5:c.5661G>T	p.Trp1887Cys	p.W1887C	ENST00000373344	NM_000489.3	1887	tgG/tgT						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76909591	76909591	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	177	493	0	ENST00000373344.5:c.4314C>G	p.Asn1438Lys	p.N1438K	ENST00000373344	NM_000489.3	1438	aaC/aaG						NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	162864478	162864479	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	145	317	1	ENST00000366898.1:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000366898	NM_004562.2	12	GGt/TTt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0011420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	479	239	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952142	178952142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	682	343	1	ENST00000263967.3:c.3197C>T	p.Ala1066Val	p.A1066V	ENST00000263967	NM_006218.2	1066	gCa/gTa						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91346836	91346836	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	135	584	0	ENST00000355112.3:c.3444G>T	p.Lys1148Asn	p.K1148N	ENST00000355112	NM_000057.2	1148	aaG/aaT						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12016625	12016625	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	486	476	0	ENST00000353533.5:c.761T>G	p.Leu254Arg	p.L254R	ENST00000353533	NM_003010.3	254	cTt/cGt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106300	27106300	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	110	425	0	ENST00000324856.7:c.5911C>G	p.Leu1971Val	p.L1971V	ENST00000324856	NM_006015.4	1971	Ctg/Gtg						NEWRECORD																																																																									
MYCL1	4610	MSKCC	GRCh37	1	40363602	40363602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	126	350	0	ENST00000397332.2:c.627G>T	p.Gln209His	p.Q209H	ENST00000397332	NM_001033082.2	209	caG/caT						NEWRECORD																																																																									
PIK3R3	8503	MSKCC	GRCh37	1	46546348	46546348	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	181	595	0	ENST00000262741.5:c.181C>T	p.Gln61Ter	p.Q61*	ENST00000262741	NM_003629.3	61	Cag/Tag						NEWRECORD																																																																									
CENPA	1058	MSKCC	GRCh37	2	27015652	27015652	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	118	657	0	ENST00000335756.4:c.239G>T	p.Arg80Leu	p.R80L	ENST00000335756	NM_001809.3	80	cGt/cTt						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29473992	29473992	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	130	414	0	ENST00000389048.3:c.2183T>C	p.Val728Ala	p.V728A	ENST00000389048	NM_004304.4	728	gTg/gCg						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29754879	29754879	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	98	329	1	ENST00000389048.3:c.1056C>A	p.His352Gln	p.H352Q	ENST00000389048	NM_004304.4	352	caC/caA						NEWRECORD																																																																									
ERCC3	2071	MSKCC	GRCh37	2	128051217	128051217	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	126	472	0	ENST00000285398.2:c.106G>T	p.Glu36Ter	p.E36*	ENST00000285398	NM_000122.1	36	Gaa/Taa						NEWRECORD																																																																									
CXCR4	7852	MSKCC	GRCh37	2	136873251	136873251	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	159	712	0	ENST00000241393.3:c.247G>T	p.Ala83Ser	p.A83S	ENST00000241393	NM_003467.2	83	Gcc/Tcc						NEWRECORD																																																																									
IRS1	3667	MSKCC	GRCh37	2	227663185	227663185	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs3731597		P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	130	471	0	ENST00000305123.5:c.270C>G	p.Asp90Glu	p.D90E	ENST00000305123	NM_005544.2	90	gaC/gaG						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266996	41266996	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	77	513	0	ENST00000349496.5:c.667C>G	p.His223Asp	p.H223D	ENST00000349496	NM_001904.3	223	Cat/Gat						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47125317	47125317	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	154	587	0	ENST00000409792.3:c.5953G>T	p.Glu1985Ter	p.E1985*	ENST00000409792	NM_014159.6	1985	Gag/Tag						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106155386	106155386	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	68	420	0	ENST00000380013.4:c.287G>C	p.Arg96Pro	p.R96P	ENST00000380013	NM_001127208.2	96	cGc/cCc						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187524465	187524465	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	69	356	0	ENST00000441802.2:c.11215G>C	p.Ala3739Pro	p.A3739P	ENST00000441802	NM_005245.3	3739	Gcg/Ccg						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187542753	187542753	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200613891		P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	64	501	0	ENST00000441802.2:c.4987G>A	p.Ala1663Thr	p.A1663T	ENST00000441802	NM_005245.3	1663	Gcc/Acc						NEWRECORD																																																																									
SDHA	6389	MSKCC	GRCh37	5	226091	226091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	22	195	0	ENST00000264932.6:c.550G>C	p.Gly184Arg	p.G184R	ENST00000264932	NM_004168.2	184	Ggg/Cgg						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2983984	2983984	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	150	629	0	ENST00000396946.4:c.546G>C	p.Lys182Asn	p.K182N	ENST00000396946	NM_032415.4	182	aaG/aaC						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259488	55259488	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	122	323	0	ENST00000275493.2:c.2546A>T	p.Gln849Leu	p.Q849L	ENST00000275493	NM_005228.3	849	cAg/cTg						NEWRECORD																																																																									
CDK6	1021	MSKCC	GRCh37	7	92354974	92354974	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	236	407	0	ENST00000265734.4:c.503G>C	p.Arg168Pro	p.R168P	ENST00000265734	NM_001259.6	168	cGc/cCc						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5126782	5126782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	149	293	1	ENST00000381652.3:c.3390G>T	p.Met1130Ile	p.M1130I	ENST00000381652	NM_004972.3	1130	atG/atT						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32439182	32439182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	115	386	0	ENST00000332351.3:c.891G>T	p.Met297Ile	p.M297I	ENST00000332351	NM_024426.4	297	atG/atT						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18524218	18524218	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	219	529	0	ENST00000266497.5:c.1730G>C	p.Trp577Ser	p.W577S	ENST00000266497		577	tGg/tCg						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21563021	21563021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	154	415	0	ENST00000382592.4:c.898G>T	p.Ala300Ser	p.A300S	ENST00000382592	NM_014572.2	300	Gcc/Tcc						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99459339	99459339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199672504		P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	197	379	0	ENST00000268035.6:c.1975C>T	p.Arg659Trp	p.R659W	ENST00000268035	NM_000875.3	659	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578254	7578255	+	stop_gained	Nonsense_Mutation	DNP	CT	CT	AA			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	113	500	0	ENST00000269305.4:c.594_595delinsTT	p.Glu198_Gly199delinsAspTer	p.E198_G199delinsD*	ENST00000269305	NM_001126112.2	198	gaAGga/gaTTga						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12013719	12013719	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	91	349	0	ENST00000353533.5:c.661G>T	p.Glu221Ter	p.E221*	ENST00000353533	NM_003010.3	221	Gaa/Taa						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15965514	15965514	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	119	470	0	ENST00000268712.3:c.5292G>T	p.Gln1764His	p.Q1764H	ENST00000268712	NM_006311.3	1764	caG/caT						NEWRECORD																																																																									
RARA	5914	MSKCC	GRCh37	17	38511542	38511542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	101	343	0	ENST00000254066.5:c.1040G>C	p.Arg347Pro	p.R347P	ENST00000254066	NM_000964.3	347	cGg/cCg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220504	1220504	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	97	383	0	ENST00000326873.7:c.597G>T	p.Glu199Asp	p.E199D	ENST00000326873	NM_000455.4	199	gaG/gaT						NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50902143	50902143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	130	505	0	ENST00000440232.2:c.35G>A	p.Gly12Glu	p.G12E	ENST00000440232	NM_002691.3	12	gGg/gAg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40710559	40710559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	65	374	0	ENST00000373198.4:c.4292C>T	p.Thr1431Ile	p.T1431I	ENST00000373198	NM_133170.3	1431	aCa/aTa						NEWRECORD																																																																									
ZRSR2	8233	MSKCC	GRCh37	X	15833966	15833966	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	68	324	0	ENST00000307771.7:c.724G>C	p.Asp242His	p.D242H	ENST00000307771	NM_005089.3	242	Gat/Cat						NEWRECORD																																																																									
ARAF	369	MSKCC	GRCh37	X	47430346	47430346	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	73	615	0	ENST00000377045.4:c.1621G>T	p.Ala541Ser	p.A541S	ENST00000377045	NM_001654.4	541	Gcc/Tcc						NEWRECORD																																																																									
TSHR	7253	MSKCC	GRCh37	14	81554355	81554355	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	70	555	0	ENST00000298171.2:c.379del	p.Leu127SerfsTer2	p.L127Sfs*2	ENST00000298171	NM_000369.2	125	ctC/ct						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88576185	88576185	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	54	349	0	ENST00000360948.2:c.1488del	p.Asp499ThrfsTer7	p.D499Tfs*7	ENST00000360948	NM_001012338.2	496	gcC/gc						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11098363	11098363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	121	436	0	ENST00000344626.4:c.885del	p.Thr296ArgfsTer7	p.T296Rfs*7	ENST00000344626	NM_003072.3	294	gCc/gc						NEWRECORD																																																																									
RAD54L	8438	MSKCC	GRCh37	1	46714238	46714243	+	inframe_deletion	In_Frame_Del	DEL	TGTGAT	TGTGAT	-			P-0014524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	135	536	0	ENST00000371975.4:c.58_63del	p.Cys20_Asp21del	p.C20_D21del	ENST00000371975	NM_003579.3	20	TGTGAT/-						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108202197	108202197	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	180	362	0	ENST00000278616.4:c.7542T>A	p.Tyr2514Ter	p.Y2514*	ENST00000278616	NM_000051.3	2514	taT/taA						NEWRECORD																																																																									
RAF1	5894	MSKCC	GRCh37	3	12645681	12645681	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	87	235	0	ENST00000251849.4:c.788T>A	p.Val263Asp	p.V263D	ENST00000251849	NM_002880.3	263	gTc/gAc						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0014524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1259	330	579	0	ENST00000397752.3:c.3028+3A>G		p.X1010_splice	ENST00000397752	NM_000245.2	1010							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0010557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	362	360	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga						NEWRECORD																																																																									
FOXL2	668	MSKCC	GRCh37	3	138665422	138665422	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	198	193	0	ENST00000330315.3:c.143A>T	p.Lys48Met	p.K48M	ENST00000330315	NM_023067.3	48	aAg/aTg						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89871754	89871754	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	327	315	0	ENST00000389301.3:c.643T>G	p.Cys215Gly	p.C215G	ENST00000389301	NM_000135.2	215	Tgc/Ggc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220506	1220506	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0010557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	191	251	0	ENST00000326873.7:c.597+2T>C		p.X199_splice	ENST00000326873	NM_000455.4	199							NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610265	10610265	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	393	415	0	ENST00000171111.5:c.445G>C	p.Glu149Gln	p.E149Q	ENST00000171111	NM_203500.1	149	Gag/Cag						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152129487	152129487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	35	94	0	ENST00000206249.3:c.440C>A	p.Pro147Gln	p.P147Q	ENST00000206249	NM_000125.3	147	cCg/cAg						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32971075	32971075	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	118	403	0	ENST00000380152.3:c.9542T>C	p.Met3181Thr	p.M3181T	ENST00000380152		3181	aTg/aCg						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11152104	11152104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	261	405	0	ENST00000344626.4:c.4292G>A	p.Arg1431His	p.R1431H	ENST00000344626	NM_003072.3	1431	cGc/cAc						NEWRECORD																																																																									
EIF1AX	1964	MSKCC	GRCh37	X	20156686	20156686	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	153	672	0	ENST00000379607.5:c.71G>C	p.Arg24Thr	p.R24T	ENST00000379607	NM_001412.3	24	aGa/aCa						NEWRECORD																																																																									
PAX5	5079	MSKCC	GRCh37	9	37034007	37034007	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	185	425	0	ENST00000358127.4:c.22C>A	p.Pro8Thr	p.P8T	ENST00000358127	NM_001280556.1	8	Ccg/Acg						NEWRECORD																																																																									
TMPRSS2	7113	MSKCC	GRCh37	21	42840450	42840450	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	215	481	0	ENST00000398585.3:c.1298T>A	p.Val433Glu	p.V433E	ENST00000398585	NM_001135099.1	433	gTg/gAg						NEWRECORD																																																																									
TMPRSS2	7113	MSKCC	GRCh37	21	42852447	42852447	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	270	656	0	ENST00000398585.3:c.639G>C	p.Trp213Cys	p.W213C	ENST00000398585	NM_001135099.1	213	tgG/tgC						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	99	486	4	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs121913370		P-0014453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	59	241	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600408	10600408	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	137	650	0	ENST00000171111.5:c.1447C>A	p.Arg483Ser	p.R483S	ENST00000171111	NM_203500.1	483	Cgc/Agc						NEWRECORD																																																																									
REL	5966	MSKCC	GRCh37	2	61147241	61147241	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	98	326	0	ENST00000295025.8:c.919C>G	p.His307Asp	p.H307D	ENST00000295025	NM_002908.2	307	Cac/Gac						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178951955	178951955	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	87	336	0	ENST00000263967.3:c.3010A>G	p.Met1004Val	p.M1004V	ENST00000263967	NM_006218.2	1004	Atg/Gtg						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47040706	47040706	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	138	322	0	ENST00000329236.7:c.1108delC	p.Gln370ArgfsTer37	p.Q370Rfs*37	ENST00000329236	NM_001204466.1	369	agC/ag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0013441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	158	644	0	ENST00000269305.4:c.96+1G>A		p.X32_splice	ENST00000269305	NM_001126112.2	32							NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0013441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	78	403	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453149	140453149	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	64	352	0	ENST00000288602.6:c.1786G>C	p.Gly596Arg	p.G596R	ENST00000288602	NM_004333.4	596	Ggt/Cgt						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52696268	52696268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	59	465	0	ENST00000394830.3:c.409G>A	p.Ala137Thr	p.A137T	ENST00000394830	NM_018313.4	137	Gct/Act						NEWRECORD																																																																									
PIK3CB	5291	MSKCC	GRCh37	3	138374302	138374302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	93	609	1	ENST00000289153.2:c.3142G>A	p.Ala1048Thr	p.A1048T	ENST00000289153	NM_006219.2	1048	Gcg/Acg						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81335697	81335697	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	87	438	0	ENST00000222390.5:c.1663G>T	p.Gly555Ter	p.G555*	ENST00000222390	NM_000601.4	555	Gga/Tga						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43609001	43609001	+	splice_region_variant,intron_variant	Splice_Region	DEL	C	C	-			P-0015082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	63	413	1	ENST00000355710.3:c.1760-3del		p.X587_splice	ENST00000355710	NM_020975.4	587							NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220430	1220430	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0015082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	83	680	0	ENST00000326873.7:c.523A>T	p.Lys175Ter	p.K175*	ENST00000326873	NM_000455.4	175	Aag/Tag						NEWRECORD																																																																									
MLL4	9757	MSKCC	GRCh37	19	36212342	36212342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	69	598	0	ENST00000222270.7:c.2093G>T	p.Arg698Leu	p.R698L	ENST00000222270	NM_014727.1	698	cGc/cTc						NEWRECORD																																																																									
CD274	29126	MSKCC	GRCh37	9	5457399	5457399	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs897885359		P-0015082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	28	127	0	ENST00000381577.3:c.373C>T	p.Arg125Ter	p.R125*	ENST00000381577	NM_014143.3	125	Cga/Tga						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39916504	39916504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	99	691	1	ENST00000378444.4:c.4499C>T	p.Ala1500Val	p.A1500V	ENST00000378444	NM_001123385.1	1500	gCc/gTc						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0010159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	269	572	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0010159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	278	349	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577144	7577146	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0010159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	440	636	0	ENST00000269305.4:c.792_794delACT	p.Leu265del	p.L265del	ENST00000269305	NM_001126112.2	264	ctACTg/ctg						NEWRECORD																																																																									
TOP1	7150	MSKCC	GRCh37	20	39657741	39657741	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0010159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	541	237	0	ENST00000361337.2:c.33+1G>A		p.X11_splice	ENST00000361337	NM_003286.2	11							NEWRECORD																																																																									
MITF	4286	MSKCC	GRCh37	3	70014295	70014295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	311	744	0	ENST00000352241.4:c.1459G>A	p.Val487Ile	p.V487I	ENST00000352241	NM_198159.2	487	Gtc/Atc						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153253826	153253826	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	200	432	1	ENST00000281708.4:c.907C>T	p.Gln303Ter	p.Q303*	ENST00000281708	NM_033632.3	303	Caa/Taa						NEWRECORD																																																																									
HIST1H3C	8352	MSKCC	GRCh37	6	26045756	26045756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	484	886	1	ENST00000540144.1:c.118C>T	p.His40Tyr	p.H40Y	ENST00000540144	NM_003531.2	40	Cat/Tat						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157222582	157222582	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	297	488	0	ENST00000346085.5:c.1849C>T	p.Gln617Ter	p.Q617*	ENST00000346085	NM_020732.3	617	Cag/Tag						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89346154	89346154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	221	348	0	ENST00000301030.4:c.6796G>A	p.Ala2266Thr	p.A2266T	ENST00000301030	NM_001256183.1	2266	Gcg/Acg						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67591125	67591267	+	splice_acceptor_variant,splice_donor_variant,stop_lost,protein_altering_variant,intron_variant	Splice_Site	DEL	TGAGAAAGACGAGAGACCAATACTTGATGTAAGTATTTGAAATGGAATCCTATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTG	TGAGAAAGACGAGAGACCAATACTTGATGTAAGTATTTGAAATGGAATCCTATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTG	-			P-0014628-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			106	114	280	0	ENST00000274335.5:c.1719_1766del		p.X573_splice	ENST00000274335		573	cTGAGAAAGACGAGAGACCAATACTTGATGTAAGTATTTGAAATGGAATCCTATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTGtt/ctt						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99467794	99467794	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014628-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			141	27	368	0	ENST00000268035.6:c.2663A>T	p.Tyr888Phe	p.Y888F	ENST00000268035	NM_000875.3	888	tAt/tTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0014020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	125	418	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
STK40	83931	MSKCC	GRCh37	1	36809495	36809495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	87	476	1	ENST00000373129.3:c.970G>A	p.Val324Ile	p.V324I	ENST00000373129	NM_032017.1	324	Gtc/Atc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175240	112175240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	120	370	0	ENST00000257430.4:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000257430	NM_000038.5	1317	Gaa/Taa						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131940554	131940554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	207	708	1	ENST00000265335.6:c.2581C>A	p.Gln861Lys	p.Q861K	ENST00000265335		861	Caa/Aaa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	73	405	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0010091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	25	332	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180039553	180039553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	17	494	0	ENST00000261937.6:c.3490G>A	p.Glu1164Lys	p.E1164K	ENST00000261937	NM_182925.4	1164	Gag/Aag						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2968255	2968255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	45	453	0	ENST00000396946.4:c.1731C>A	p.Tyr577Ter	p.Y577*	ENST00000396946	NM_032415.4	577	taC/taA						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76938836	76938836	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	31	618	0	ENST00000373344.5:c.1912C>A	p.His638Asn	p.H638N	ENST00000373344	NM_000489.3	638	Cat/Aat						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70118927	70118927	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	254	585	0	ENST00000245479.2:c.499A>G	p.Lys167Glu	p.K167E	ENST00000245479	NM_000346.3	167	Aag/Gag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	146	278	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151877006	151877006	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	54	448	0	ENST00000262189.6:c.7355G>T	p.Gly2452Val	p.G2452V	ENST00000262189	NM_170606.2	2452	gGa/gTa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8507306	8507306	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	57	418	0	ENST00000356435.5:c.1672G>T	p.Glu558Ter	p.E558*	ENST00000356435		558	Gag/Tag						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46205332	46205332	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0010442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	28	263	0	ENST00000334344.6:c.416C>A	p.Ser139Ter	p.S139*	ENST00000334344	NM_152641.2	139	tCg/tAg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49432063	49432063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1207	68	558	0	ENST00000301067.7:c.9076G>A	p.Gly3026Ser	p.G3026S	ENST00000301067	NM_003482.3	3026	Ggc/Agc						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66931479	66931479	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	52	263	0	ENST00000374690.3:c.2121A>C	p.Glu707Asp	p.E707D	ENST00000374690	NM_000044.3	707	gaA/gaC						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577070	7577070	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	179	887	0	ENST00000269305.4:c.868delC	p.Arg290AlafsTer55	p.R290Afs*55	ENST00000269305	NM_001126112.2	290	Cgc/gc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55225430	55225430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	32	520	1	ENST00000275493.2:c.1282G>A	p.Gly428Ser	p.G428S	ENST00000275493	NM_005228.3	428	Ggc/Agc						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2217918	2217918	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	133	568	0	ENST00000398665.3:c.2691+1G>A		p.X897_splice	ENST00000398665	NM_032482.2	897							NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143352325	143352325	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	69	362	2	ENST00000262992.4:c.88A>G	p.Thr30Ala	p.T30A	ENST00000262992	NM_001101669.1	30	Aca/Gca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0011454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	95	324	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0010763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	67	422	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189526242	189526242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1064	174	601	1	ENST00000264731.3:c.506C>A	p.Thr169Asn	p.T169N	ENST00000264731	NM_003722.4	169	aCc/aAc						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32188961	32188961	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	79	685	2	ENST00000375023.3:c.593G>T	p.Cys198Phe	p.C198F	ENST00000375023	NM_004557.3	198	tGc/tTc						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50468080	50468080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	57	334	0	ENST00000331340.3:c.1315C>T	p.Arg439Cys	p.R439C	ENST00000331340	NM_006060.4	439	Cgc/Tgc						NEWRECORD																																																																									
IGF2	3481	MSKCC	GRCh37	11	2154411	2154411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	56	620	0	ENST00000434045.2:c.517G>T	p.Asp173Tyr	p.D173Y	ENST00000434045	NM_001127598.1	173	Gac/Tac						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42005652	42005652	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	148	700	4	ENST00000219905.7:c.3388G>T	p.Glu1130Ter	p.E1130*	ENST00000219905	NM_001164273.1	1130	Gaa/Taa						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117684016	117684017	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0010763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	100	281	0	ENST00000368508.3:c.3130_3131delinsAT	p.Pro1044Ile	p.P1044I	ENST00000368508	NM_002944.2	1044	CCa/ATa						NEWRECORD																																																																									
SRC	6714	MSKCC	GRCh37	20	36012638	36012641	+	missense_variant	Missense_Mutation	ONP	GGCG	GGCG	CGCT			P-0010763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	24	337	0	ENST00000358208.4:c.82_85delinsCGCT	p.Gly28_Gly29delinsArgTrp	p.G28_G29delinsRW	ENST00000358208		28	GGCGgg/CGCTgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs878854073		P-0012027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	193	185	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225							NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99152604	99152604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	282	309	0	ENST00000074304.5:c.400G>A	p.Gly134Ser	p.G134S	ENST00000074304	NM_001134224.1	134	Ggc/Agc						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89480330	89480330	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	565	252	0	ENST00000336596.2:c.2167C>G	p.Leu723Val	p.L723V	ENST00000336596	NM_005233.5	723	Cta/Gta						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66509098	66509098	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	202	224	0	ENST00000273854.3:c.229G>C	p.Ala77Pro	p.A77P	ENST00000273854	NM_004439.5	77	Gct/Cct						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50459433	50459433	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	190	200	0	ENST00000331340.3:c.722A>G	p.Lys241Arg	p.K241R	ENST00000331340	NM_006060.4	241	aAa/aGa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8465578	8465578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	359	415	0	ENST00000356435.5:c.3602C>T	p.Thr1201Ile	p.T1201I	ENST00000356435		1201	aCt/aTt						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29546044	29546044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	226	226	0	ENST00000358273.4:c.1549G>A	p.Glu517Lys	p.E517K	ENST00000358273	NM_001042492.2	517	Gaa/Aaa						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37619204	37619204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	205	248	0	ENST00000447079.4:c.880C>T	p.Pro294Ser	p.P294S	ENST00000447079	NM_015083.1	294	Ccc/Tcc						NEWRECORD																																																																									
FYN	2534	MSKCC	GRCh37	6	111983136	111983136	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	256	386	0	ENST00000368678.4:c.1411del	p.Glu471ArgfsTer26	p.E471Rfs*26	ENST00000368678		471	Gag/ag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0013189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	207	626	3	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0013189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2881	194	496	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	183	440	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0013867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	260	643	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55961059	55961059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	121	674	0	ENST00000263923.4:c.2881C>T	p.Arg961Trp	p.R961W	ENST00000263923	NM_002253.2	961	Cgg/Tgg						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	29008300	29008300	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	262	665	0	ENST00000282397.4:c.571G>T	p.Gly191Cys	p.G191C	ENST00000282397	NM_002019.4	191	Ggc/Tgc						NEWRECORD																																																																									
TMPRSS2	7113	MSKCC	GRCh37	21	42860440	42860440	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0013867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	202	467	0	ENST00000398585.3:c.437T>A	p.Met146Lys	p.M146K	ENST00000398585	NM_001135099.1	146	aTg/aAg						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187539752	187539752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	114	550	0	ENST00000441802.2:c.7988G>T	p.Gly2663Val	p.G2663V	ENST00000441802	NM_005245.3	2663	gGc/gTc						NEWRECORD																																																																									
FYN	2534	MSKCC	GRCh37	6	112035593	112035593	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1064	375	837	2	ENST00000368678.4:c.301C>A	p.Leu101Met	p.L101M	ENST00000368678		101	Ctg/Atg						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8633329	8633329	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1104	143	710	0	ENST00000356435.5:c.340A>T	p.Thr114Ser	p.T114S	ENST00000356435		114	Aca/Tca						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76889200	76889200	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	92	329	0	ENST00000373344.5:c.4810G>T	p.Val1604Leu	p.V1604L	ENST00000373344	NM_000489.3	1604	Gtg/Ttg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0014179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	621	562	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa						NEWRECORD																																																																									
PAX5	5079	MSKCC	GRCh37	9	36923394	36923394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	178	765	1	ENST00000358127.4:c.868G>A	p.Gly290Arg	p.G290R	ENST00000358127	NM_001280556.1	290	Ggg/Agg						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27100934	27100934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	148	574	1	ENST00000324856.7:c.4216C>A	p.Pro1406Thr	p.P1406T	ENST00000324856	NM_006015.4	1406	Ccc/Acc						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18800934	18800934	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	67	361	1	ENST00000266497.5:c.4310G>T	p.Trp1437Leu	p.W1437L	ENST00000266497		1437	tGg/tTg						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8389354	8389354	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	102	532	1	ENST00000356435.5:c.4264C>T	p.Gln1422Ter	p.Q1422*	ENST00000356435		1422	Caa/Taa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8436662	8436662	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	139	482	0	ENST00000356435.5:c.4016T>C	p.Ile1339Thr	p.I1339T	ENST00000356435		1339	aTc/aCc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0012419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	67	664	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112155042	112155042	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0012419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	54	537	0	ENST00000257430.4:c.1312+1G>A		p.X438_splice	ENST00000257430	NM_000038.5	438							NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117638347	117638347	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519788		P-0012525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	69	578	0	ENST00000368508.3:c.6094G>A	p.Gly2032Arg	p.G2032R	ENST00000368508	NM_002944.2	2032	Gga/Aga						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47058730	47058734	+	frameshift_variant	Frame_Shift_Del	DEL	AACAC	AACAC	T			P-0012525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	42	349	0	ENST00000409792.3:c.7544_7548delinsA	p.Gly2515GlufsTer2	p.G2515Efs*2	ENST00000409792	NM_014159.6	2515	gGTGTT/gA						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152163758	152163758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	444	239	0	ENST00000206249.3:c.479G>A	p.Gly160Asp	p.G160D	ENST00000206249	NM_000125.3	160	gGt/gAt						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44936073	44936073	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0011373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	562	307	0	ENST00000377967.4:c.2832+2T>C		p.X944_splice	ENST00000377967	NM_021140.2	944							NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0010131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	97	517	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47034419	47034420	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0010131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	168	540	0	ENST00000329236.7:c.273_274del	p.Gln92GlufsTer10	p.Q92Efs*10	ENST00000329236	NM_001204466.1	91	ggTCag/ggag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0013786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	429	590	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0013786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	166	565	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178922363	178922363	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	164	494	0	ENST00000263967.3:c.1132T>C	p.Cys378Arg	p.C378R	ENST00000263967	NM_006218.2	378	Tgt/Cgt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27089513	27089513	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	175	506	0	ENST00000324856.7:c.2472del	p.Ser825ValfsTer8	p.S825Vfs*8	ENST00000324856	NM_006015.4	823	taC/ta						NEWRECORD																																																																									
AKT2	208	MSKCC	GRCh37	19	40748477	40748477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	253	730	0	ENST00000392038.2:c.405G>C	p.Glu135Asp	p.E135D	ENST00000392038	NM_001626.4	135	gaG/gaC						NEWRECORD																																																																									
ERCC2	2068	MSKCC	GRCh37	19	45855565	45855565	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	199	692	1	ENST00000391945.4:c.2092C>T	p.Gln698Ter	p.Q698*	ENST00000391945	NM_000400.3	698	Cag/Tag						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0014951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	319	421	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68847332	68847333	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0014951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	322	704	0	ENST00000261769.5:c.1254_1255del	p.Asp418GlufsTer27	p.D418Efs*27	ENST00000261769	NM_004360.3	418	gaTGat/gaat						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0010025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	249	534	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453149	140453149	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	199	312	0	ENST00000288602.6:c.1786G>C	p.Gly596Arg	p.G596R	ENST00000288602	NM_004333.4	596	Ggt/Cgt						NEWRECORD																																																																									
FH	2271	MSKCC	GRCh37	1	241672028	241672028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	385	310	1	ENST00000366560.3:c.613G>A	p.Glu205Lys	p.E205K	ENST00000366560	NM_000143.3	205	Gaa/Aaa						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25469567	25469567	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	231	475	0	ENST00000264709.3:c.1201G>T	p.Val401Leu	p.V401L	ENST00000264709	NM_175629.2	401	Gtg/Ttg						NEWRECORD																																																																									
PMS1	5378	MSKCC	GRCh37	2	190732539	190732539	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	177	483	0	ENST00000441310.2:c.2357C>G	p.Ser786Cys	p.S786C	ENST00000441310	NM_000534.4	786	tCt/tGt						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89478303	89478303	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	141	365	0	ENST00000336596.2:c.2122G>C	p.Asp708His	p.D708H	ENST00000336596	NM_005233.5	708	Gat/Cat						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66230872	66230872	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	151	488	1	ENST00000273854.3:c.2099G>T	p.Arg700Ile	p.R700I	ENST00000273854	NM_004439.5	700	aGa/aTa						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66356257	66356257	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	192	418	0	ENST00000273854.3:c.1240T>C	p.Tyr414His	p.Y414H	ENST00000273854	NM_004439.5	414	Tac/Cac						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143067048	143067048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	189	554	0	ENST00000262992.4:c.1665C>A	p.Asn555Lys	p.N555K	ENST00000262992	NM_001101669.1	555	aaC/aaA						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32929225	32929225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1165	147	745	0	ENST00000380152.3:c.7235C>G	p.Thr2412Ser	p.T2412S	ENST00000380152		2412	aCt/aGt						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68857311	68857311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	176	385	1	ENST00000261769.5:c.1946C>T	p.Ser649Phe	p.S649F	ENST00000261769	NM_004360.3	649	tCt/tTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0014577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	50	473	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37627730	37627730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	76	738	0	ENST00000447079.4:c.1645C>T	p.Pro549Ser	p.P549S	ENST00000447079	NM_015083.1	549	Ccc/Tcc						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157099957	157099957	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	61	542	1	ENST00000346085.5:c.894T>A	p.Tyr298Ter	p.Y298*	ENST00000346085	NM_020732.3	298	taT/taA						NEWRECORD																																																																									
PAX5	5079	MSKCC	GRCh37	9	36923382	36923382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	57	588	0	ENST00000358127.4:c.880C>T	p.Pro294Ser	p.P294S	ENST00000358127	NM_001280556.1	294	Cca/Tca						NEWRECORD																																																																									
SYK	6850	MSKCC	GRCh37	9	93650080	93650080	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	52	410	0	ENST00000375746.1:c.1631T>C	p.Ile544Thr	p.I544T	ENST00000375746	NM_001174167.1	544	aTc/aCc						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31389095	31389095	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756558325		P-0010794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	52	378	0	ENST00000328111.2:c.2008C>T	p.Arg670Trp	p.R670W	ENST00000328111	NM_006892.3	670	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	534	632	0	ENST00000269305.4:c.841G>T	p.Asp281Tyr	p.D281Y	ENST00000269305	NM_001126112.2	281	Gac/Tac						NEWRECORD																																																																									
IRS1	3667	MSKCC	GRCh37	2	227662977	227662977	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1035	361	530	0	ENST00000305123.5:c.478T>A	p.Phe160Ile	p.F160I	ENST00000305123	NM_005544.2	160	Ttc/Atc						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89259182	89259182	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1217	1134	395	0	ENST00000336596.2:c.326T>A	p.Ile109Asn	p.I109N	ENST00000336596	NM_005233.5	109	aTt/aAt						NEWRECORD																																																																									
YAP1	10413	MSKCC	GRCh37	11	102100553	102100553	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	421	538	0	ENST00000282441.5:c.1397A>T	p.Glu466Val	p.E466V	ENST00000282441	NM_001130145.2	466	gAa/gTa						NEWRECORD																																																																									
FLCN	201163	MSKCC	GRCh37	17	17117122	17117122	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1764	347	595	0	ENST00000285071.4:c.1587A>T	p.Lys529Asn	p.K529N	ENST00000285071	NM_144997.5	529	aaA/aaT						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53226147	53226147	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1165	356	545	0	ENST00000375401.3:c.2702T>C	p.Leu901Pro	p.L901P	ENST00000375401	NM_004187.3	901	cTg/cCg						NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100617210	100617210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2416	239	699	2	ENST00000308731.7:c.539C>A	p.Ser180Tyr	p.S180Y	ENST00000308731	NM_000061.2	180	tCt/tAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	211	374	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600008	10600008	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	304	399	1	ENST00000171111.5:c.1568G>T	p.Gly523Val	p.G523V	ENST00000171111	NM_203500.1	523	gGg/gTg						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145742108	145742108	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	90	227	0	ENST00000428558.2:c.395G>C	p.Arg132Thr	p.R132T	ENST00000428558	NM_004260.3	132	aGa/aCa						NEWRECORD																																																																									
REL	5966	MSKCC	GRCh37	2	61147748	61147748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	146	259	0	ENST00000295025.8:c.1058C>T	p.Ser353Leu	p.S353L	ENST00000295025	NM_002908.2	353	tCa/tTa						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66467562	66467562	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	218	435	0	ENST00000273854.3:c.707T>C	p.Val236Ala	p.V236A	ENST00000273854	NM_004439.5	236	gTg/gCg						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180047230	180047230	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	159	614	0	ENST00000261937.6:c.2485G>C	p.Glu829Gln	p.E829Q	ENST00000261937	NM_182925.4	829	Gaa/Caa						NEWRECORD																																																																									
E2F3	1871	MSKCC	GRCh37	6	20481478	20481478	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	100	345	0	ENST00000346618.3:c.547C>G	p.Leu183Val	p.L183V	ENST00000346618	NM_001949.4	183	Ctt/Gtt						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41739816	41739816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	120	559	0	ENST00000242208.4:c.157G>C	p.Glu53Gln	p.E53Q	ENST00000242208	NM_002192.2	53	Gag/Cag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55233114	55233114	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	75	289	0	ENST00000275493.2:c.1864C>G	p.Pro622Ala	p.P622A	ENST00000275493	NM_005228.3	622	Cca/Gca						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151902241	151902241	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	71	265	0	ENST00000262189.6:c.3911G>C	p.Arg1304Thr	p.R1304T	ENST00000262189	NM_170606.2	1304	aGa/aCa						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108175440	108175440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	92	339	0	ENST00000278616.4:c.5535G>C	p.Leu1845Phe	p.L1845F	ENST00000278616	NM_000051.3	1845	ttG/ttC						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89831421	89831421	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	148	513	0	ENST00000389301.3:c.2655G>T	p.Glu885Asp	p.E885D	ENST00000389301	NM_000135.2	885	gaG/gaT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578215	7578227	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTGTTTCTGTC	AAGTGTTTCTGTC	-			P-0010610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	426	580	0	ENST00000269305.4:c.622_634del	p.Asp208PhefsTer35	p.D208Ffs*35	ENST00000269305	NM_001126112.2	208	GACAGAAACACTTtt/tt						NEWRECORD																																																																									
CUL3	8452	MSKCC	GRCh37	2	225376185	225376186	+	missense_variant	Missense_Mutation	DNP	CC	CC	GT			P-0010610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	117	513	0	ENST00000264414.4:c.768_769delinsAC	p.Glu257Gln	p.E257Q	ENST00000264414	NM_003590.4	256	acGGaa/acACaa						NEWRECORD																																																																									
IRS1	3667	MSKCC	GRCh37	2	227661497	227661497	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	10	584	0	ENST00000305123.5:c.1958A>G	p.His653Arg	p.H653R	ENST00000305123	NM_005544.2	653	cAt/cGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579533	7579533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	260	736	0	ENST00000269305.4:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000269305	NM_001126112.2	52	Caa/Taa						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162724620	162724620	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	109	516	0	ENST00000367921.3:c.392C>G	p.Ser131Cys	p.S131C	ENST00000367921	NM_006182.2	131	tCt/tGt						NEWRECORD																																																																									
NFKBIA	4792	MSKCC	GRCh37	14	35872475	35872475	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	62	478	0	ENST00000216797.5:c.428G>C	p.Arg143Pro	p.R143P	ENST00000216797	NM_020529.2	143	cGa/cCa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174110	112174110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	76	421	0	ENST00000257430.4:c.2819C>T	p.Ser940Leu	p.S940L	ENST00000257430	NM_000038.5	940	tCg/tTg						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98241347	98241347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	237	577	0	ENST00000331920.6:c.1150C>T	p.His384Tyr	p.H384Y	ENST00000331920	NM_000264.3	384	Cac/Tac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0014552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	307	659	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a						NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0014552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	92	186	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt						NEWRECORD																																																																									
INPPL1	3636	MSKCC	GRCh37	11	71941881	71941881	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1198	139	599	0	ENST00000298229.2:c.1239C>A	p.Asn413Lys	p.N413K	ENST00000298229	NM_001567.3	413	aaC/aaA						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	110	676	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0014614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	59	710	0				ENST00000310581	NM_198253.2								NEWRECORD																																																																									
FGFR2	2263	MSKCC	GRCh37	10	123263446	123263446	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	39	491	0	ENST00000358487.5:c.1297G>C	p.Glu433Gln	p.E433Q	ENST00000358487	NM_000141.4	433	Gag/Cag						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857056	9857056	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	31	292	0	ENST00000330684.3:c.4345A>T	p.Ser1449Cys	p.S1449C	ENST00000330684	NM_001134407.1	1449	Agc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576893	7576923	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGGGGAGAGGAGCTGGTGTTGTTGGGCA	GGCTGGGGAGAGGAGCTGGTGTTGTTGGGCA	-			P-0014614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	50	825	0	ENST00000269305.4:c.923_953del	p.Leu308GlnfsTer27	p.L308Qfs*27	ENST00000269305	NM_001126112.2	308	cTGCCCAACAACACCAGCTCCTCTCCCCAGCCa/ca						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41243023	41243023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	48	689	0	ENST00000357654.3:c.4123G>A	p.Glu1375Lys	p.E1375K	ENST00000357654	NM_007294.3	1375	Gaa/Aaa						NEWRECORD																																																																									
PDCD1LG2	80380	MSKCC	GRCh37	9	5549596	5549596	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs111291501		P-0014614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	37	649	0	ENST00000397747.3:c.623A>G	p.Asp208Gly	p.D208G	ENST00000397747	NM_025239.3	208	gAc/gGc						NEWRECORD																																																																									
PDCD1LG2	80380	MSKCC	GRCh37	9	5563193	5563193	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	33	547	0	ENST00000397747.3:c.798G>C	p.Lys266Asn	p.K266N	ENST00000397747	NM_025239.3	266	aaG/aaC						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76939033	76939034	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0014614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	40	532	0	ENST00000373344.5:c.1714_1715delinsTT	p.Gly572Leu	p.G572L	ENST00000373344	NM_000489.3	572	GGa/TTa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0011376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	382	242	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc						NEWRECORD																																																																									
MYCL1	4610	MSKCC	GRCh37	1	40367093	40367093	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	240	465	0	ENST00000397332.2:c.104C>G	p.Ser35Trp	p.S35W	ENST00000397332	NM_001033082.2	35	tCg/tGg						NEWRECORD																																																																									
XPO1	7514	MSKCC	GRCh37	2	61722614	61722614	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1075	237	341	0	ENST00000401558.2:c.1023A>C	p.Leu341Phe	p.L341F	ENST00000401558	NM_003400.3	341	ttA/ttC						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72827783	72827783	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1419	394	490	0	ENST00000268489.5:c.8798C>G	p.Ser2933Cys	p.S2933C	ENST00000268489	NM_006885.3	2933	tCt/tGt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs137853076		P-0014257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	656	1210	1	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41101118	41101118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751886972		P-0014257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	109	526	0	ENST00000373198.4:c.1238C>T	p.Ala413Val	p.A413V	ENST00000373198	NM_133170.3	413	gCg/gTg						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8404587	8404587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	46	304	1	ENST00000356435.5:c.4160C>T	p.Ala1387Val	p.A1387V	ENST00000356435		1387	gCg/gTg						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70333776	70333776	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	204	559	0	ENST00000373644.4:c.1681G>T	p.Val561Leu	p.V561L	ENST00000373644	NM_030625.2	561	Gtg/Ttg						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46230728	46230728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	59	275	0	ENST00000334344.6:c.977C>T	p.Ser326Phe	p.S326F	ENST00000334344	NM_152641.2	326	tCt/tTt						NEWRECORD																																																																									
PTPN11	5781	MSKCC	GRCh37	12	112893789	112893789	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	190	444	0	ENST00000351677.2:c.678A>G	p.Ile226Met	p.I226M	ENST00000351677	NM_002834.3	226	atA/atG						NEWRECORD																																																																									
SLX4	84464	MSKCC	GRCh37	16	3641233	3641235	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0014257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1198	200	1294	1	ENST00000294008.3:c.2404_2406del	p.Glu802del	p.E802del	ENST00000294008	NM_032444.2	802	GAG/-						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610135	10610140	+	inframe_deletion	In_Frame_Del	DEL	TCAGCG	TCAGCG	-			P-0014257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	451	846	1	ENST00000171111.5:c.570_575del	p.Phe190_Glu192delinsLeu	p.F190_E192delinsL	ENST00000171111	NM_203500.1	190	ttCGCTGAg/ttg						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25468144	25468144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	583	1122	3	ENST00000264709.3:c.1532G>A	p.Gly511Glu	p.G511E	ENST00000264709	NM_175629.2	511	gGa/gAa						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89457239	89457239	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	229	346	0	ENST00000336596.2:c.1720C>G	p.His574Asp	p.H574D	ENST00000336596	NM_005233.5	574	Cat/Gat						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	93982087	93982087	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	87	442	1	ENST00000369303.4:c.1378G>T	p.Glu460Ter	p.E460*	ENST00000369303	NM_004440.3	460	Gag/Tag						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2979524	2979524	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	220	518	0	ENST00000396946.4:c.723G>T	p.Glu241Asp	p.E241D	ENST00000396946	NM_032415.4	241	gaG/gaT						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	160	397	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	87	371	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41244821	41244821	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	119	503	0	ENST00000357654.3:c.2727T>A	p.Asn909Lys	p.N909K	ENST00000357654	NM_007294.3	909	aaT/aaA						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266012	41266312	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTG	TATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTG	-			P-0012781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	32	340	0	ENST00000349496.5:c.14-1_241+72del		p.X5_splice	ENST00000349496	NM_001904.3	5							NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16258207	16258207	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	106	844	1	ENST00000375759.3:c.5474del	p.Lys1825ArgfsTer9	p.K1825Rfs*9	ENST00000375759	NM_015001.2	1824	tcA/tc						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44945173	44945173	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	61	536	0	ENST00000377967.4:c.3497G>A	p.Trp1166Ter	p.W1166*	ENST00000377967	NM_021140.2	1166	tGg/tAg						NEWRECORD																																																																									
HRAS	3265	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28933406		P-0011003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1149	749	596	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag						NEWRECORD																																																																									
MDM2	4193	MSKCC	GRCh37	12	69222593	69222593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1495	91	610	0	ENST00000462284.1:c.566G>A	p.Arg189His	p.R189H	ENST00000462284	NM_002392.5	189	cGc/cAc						NEWRECORD																																																																									
NBN	4683	MSKCC	GRCh37	8	90970995	90970995	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1559	123	721	0	ENST00000265433.3:c.1082C>A	p.Thr361Lys	p.T361K	ENST00000265433	NM_002485.4	361	aCa/aAa						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88669556	88669556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1074	97	632	2	ENST00000360948.2:c.1342G>T	p.Val448Phe	p.V448F	ENST00000360948	NM_001012338.2	448	Gtt/Ttt						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29550505	29550505	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1002	125	494	1	ENST00000358273.4:c.1765C>G	p.Gln589Glu	p.Q589E	ENST00000358273	NM_001042492.2	589	Caa/Gaa						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29556391	29556391	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	176	529	0	ENST00000358273.4:c.2758C>G	p.Leu920Val	p.L920V	ENST00000358273	NM_001042492.2	920	Ctg/Gtg						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37646866	37646867	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0011003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1083	494	802	1	ENST00000447079.4:c.1988_1989del	p.Arg663ProfsTer36	p.R663Pfs*36	ENST00000447079	NM_015083.1	663	cGT/c						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0012843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	164	526	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63554527	63554527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	113	443	1	ENST00000307078.5:c.212C>T	p.Pro71Leu	p.P71L	ENST00000307078	NM_004655.3	71	cCg/cTg						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	19	528	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52441252	52441252	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	132	506	0	ENST00000460680.1:c.518A>G	p.Tyr173Cys	p.Y173C	ENST00000460680	NM_004656.3	173	tAt/tGt						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46287292	46287292	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	79	508	0	ENST00000334344.6:c.5237G>C	p.Arg1746Thr	p.R1746T	ENST00000334344	NM_152641.2	1746	aGa/aCa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380276	25380277	+	missense_variant	Missense_Mutation	DNP	TG	TG	GC			P-0014089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	129	534	0	ENST00000256078.4:c.181_182delinsGC	p.Gln61Ala	p.Q61A	ENST00000256078	NM_033360.2	61	CAa/GCa						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30732951	30732951	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	97	425	0	ENST00000359013.4:c.1639G>C	p.Asp547His	p.D547H	ENST00000359013	NM_001024847.2	547	Gac/Cac						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128852146	128852146	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	102	757	0	ENST00000249373.3:c.2218G>T	p.Glu740Ter	p.E740*	ENST00000249373	NM_005631.4	740	Gag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	153	440	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	297	649	2	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0014195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	110	397	1	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0014195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	77	324	4	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133234519	133234519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	167	465	0	ENST00000320574.5:c.3313G>A	p.Val1105Met	p.V1105M	ENST00000320574	NM_006231.2	1105	Gtg/Atg						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67482785	67482785	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	398	525	0	ENST00000327367.4:c.1189G>T	p.Glu397Ter	p.E397*	ENST00000327367	NM_005902.3	397	Gag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0013416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	216	559	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	400	601	0	ENST00000269305.4:c.398T>G	p.Met133Arg	p.M133R	ENST00000269305	NM_001126112.2	133	aTg/aGg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	536	572	0	ENST00000263967.3:c.3132T>G	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaG						NEWRECORD																																																																									
CASP8	841	MSKCC	GRCh37	2	202141686	202141686	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	85	416	0	ENST00000358485.4:c.974A>T	p.Asp325Val	p.D325V	ENST00000358485	NM_001080125.1	325	gAt/gTt						NEWRECORD																																																																									
FGFR3	2261	MSKCC	GRCh37	4	1806177	1806177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	181	811	0	ENST00000260795.2:c.1196G>A	p.Arg399His	p.R399H	ENST00000260795		399	cGc/cAc						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131978051	131978051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	80	377	0	ENST00000265335.6:c.3934C>T	p.His1312Tyr	p.H1312Y	ENST00000265335		1312	Cat/Tat						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48573667	48573667	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0013416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	113	243	0	ENST00000342988.3:c.249+2T>G		p.X83_splice	ENST00000342988	NM_005359.5	83							NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48953774	48953789	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CATGCTTAAATCAGTA	CATGCTTAAATCAGTA	-			P-0013416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	94	382	0	ENST00000267163.4:c.1377_1389+3del		p.X459_splice	ENST00000267163	NM_000321.2	459							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0010458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	249	372	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0010458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	51	114	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151864400	151864427	+	frameshift_variant	Frame_Shift_Del	DEL	TGCATTTGAAGCAGCTGTTGGGTCTCCT	TGCATTTGAAGCAGCTGTTGGGTCTCCT	-			P-0010458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	148	307	0	ENST00000262189.6:c.9554_9581del	p.Gln3185ArgfsTer55	p.Q3185Rfs*55	ENST00000262189	NM_170606.2	3185	cAGGAGACCCAACAGCTGCTTCAAATGCAg/cg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0014222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	170	480	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	479	664	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc						NEWRECORD																																																																									
CYLD	1540	MSKCC	GRCh37	16	50820764	50820764	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0014222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	56	266	0	ENST00000398568.2:c.1941-2A>T		p.X647_splice	ENST00000398568	NM_001042412.1	647							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0013982-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	801	804	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175746	112175746	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013982-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	147	402	1	ENST00000257430.4:c.4455del	p.Asp1486IlefsTer21	p.D1486Ifs*21	ENST00000257430	NM_000038.5	1485	gcT/gc						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013982-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	868	1096	1	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	41962023	41962023	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013982-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	1559	1507	2	ENST00000219905.7:c.931T>G	p.Ser311Ala	p.S311A	ENST00000219905	NM_001164273.1	311	Tca/Gca						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	149	367	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2958169	2958169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	218	636	2	ENST00000396946.4:c.2563C>T	p.Arg855Trp	p.R855W	ENST00000396946	NM_032415.4	855	Cgg/Tgg						NEWRECORD																																																																									
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	157	569	0	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	34	235	0	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	116	676	2	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55372184	55372184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	83	561	0	ENST00000297316.4:c.874G>A	p.Ala292Thr	p.A292T	ENST00000297316	NM_022454.3	292	Gcc/Acc						NEWRECORD																																																																									
GATA2	2624	MSKCC	GRCh37	3	128204842	128204842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	120	822	0	ENST00000341105.2:c.599del	p.Gly200ValfsTer18	p.G200Vfs*18	ENST00000341105	NM_032638.4	200	gGt/gt						NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	133	645	3	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987							NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	166	751	3	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47084146	47084146	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	99	621	0	ENST00000409792.3:c.7143del	p.Ser2382LeufsTer29	p.S2382Lfs*29	ENST00000409792	NM_014159.6	2381	ccC/cc						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	156	652	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	211	462	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag						NEWRECORD																																																																									
RHOA	387	MSKCC	GRCh37	3	49412946	49412946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	145	798	1	ENST00000418115.1:c.77G>A	p.Ser26Asn	p.S26N	ENST00000418115	NM_001664.2	26	aGc/aAc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40713414	40713414	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	71	602	0	ENST00000373198.4:c.4101del	p.Ser1368ProfsTer31	p.S1368Pfs*31	ENST00000373198	NM_133170.3	1367	ccC/cc						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212812317	212812317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	41	369	0	ENST00000342788.4:c.259G>A	p.Val87Met	p.V87M	ENST00000342788	NM_005235.2	87	Gtg/Atg						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42052626	42052626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	111	484	0	ENST00000219905.7:c.7297C>T	p.Arg2433Trp	p.R2433W	ENST00000219905	NM_001164273.1	2433	Cgg/Tgg						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157528079	157528079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	84	486	0	ENST00000346085.5:c.5804C>T	p.Ala1935Val	p.A1935V	ENST00000346085	NM_020732.3	1935	gCg/gTg						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5245949	5245949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	145	780	1	ENST00000357368.4:c.826G>A	p.Val276Met	p.V276M	ENST00000357368	NM_002850.3	276	Gtg/Atg						NEWRECORD																																																																									
RAF1	5894	MSKCC	GRCh37	3	12650799	12650799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	84	580	1	ENST00000251849.4:c.356C>T	p.Ala119Val	p.A119V	ENST00000251849	NM_002880.3	119	gCg/gTg						NEWRECORD																																																																									
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1092	163	785	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106197149	106197149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	55	308	0	ENST00000380013.4:c.5482C>T	p.Gln1828Ter	p.Q1828*	ENST00000380013	NM_001127208.2	1828	Cag/Tag						NEWRECORD																																																																									
ERRFI1	54206	MSKCC	GRCh37	1	8074063	8074063	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs190510946		P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	73	317	0	ENST00000377482.5:c.596G>A	p.Arg199Gln	p.R199Q	ENST00000377482	NM_018948.3	199	cGa/cAa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27105635	27105635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	87	484	0	ENST00000324856.7:c.5246G>T	p.Arg1749Met	p.R1749M	ENST00000324856	NM_006015.4	1749	aGg/aTg						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120458665	120458665	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	79	532	0	ENST00000256646.2:c.6680A>G	p.His2227Arg	p.H2227R	ENST00000256646	NM_024408.3	2227	cAc/cGc						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156830826	156830826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	115	485	2	ENST00000524377.1:c.100G>A	p.Ala34Thr	p.A34T	ENST00000524377	NM_002529.3	34	Gca/Aca						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49426605	49426606	+	missense_variant	Missense_Mutation	DNP	TT	TT	AA			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	107	478	0	ENST00000301067.7:c.11882_11883inv	p.Gln3961Leu	p.Q3961L	ENST00000301067	NM_003482.3	3961	cAA/cTT						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49437555	49437557	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	97	553	0	ENST00000301067.7:c.5328_5330del	p.Phe1777del	p.F1777del	ENST00000301067	NM_003482.3	1776	ttCTTt/ttt						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32913436	32913436	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	76	548	0	ENST00000380152.3:c.4948del	p.Ser1650ValfsTer20	p.S1650Vfs*20	ENST00000380152		1648	gcA/gc						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32937355	32937355	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	75	416	0	ENST00000380152.3:c.8021delA	p.Lys2674ArgfsTer2	p.K2674Rfs*2	ENST00000380152		2672	atA/at						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32937480	32937480	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	132	705	0	ENST00000380152.3:c.8145delA	p.Val2716TrpfsTer17	p.V2716Wfs*17	ENST00000380152		2714	cAa/ca						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2136246	2136246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	98	597	1	ENST00000219476.3:c.4715C>T	p.Thr1572Met	p.T1572M	ENST00000219476	NM_000548.3	1572	aCg/aTg						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72991674	72991674	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200230716		P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	71	424	0	ENST00000268489.5:c.2371G>A	p.Gly791Arg	p.G791R	ENST00000268489	NM_006885.3	791	Ggg/Agg						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89351069	89351069	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	127	671	0	ENST00000301030.4:c.1881del	p.Val628LeufsTer25	p.V628Lfs*25	ENST00000301030	NM_001256183.1	627	aaA/aa						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5243989	5243989	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	125	599	0	ENST00000357368.4:c.1493C>G	p.Thr498Ser	p.T498S	ENST00000357368	NM_002850.3	498	aCc/aGc						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7117259	7117259	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	152	732	0	ENST00000302850.5:c.3957G>T	p.Met1319Ile	p.M1319I	ENST00000302850	NM_000208.2	1319	atG/atT						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11118632	11118632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	107	621	0	ENST00000344626.4:c.2056G>A	p.Glu686Lys	p.E686K	ENST00000344626	NM_003072.3	686	Gag/Aag						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15300134	15300134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	164	673	0	ENST00000263388.2:c.1142C>T	p.Pro381Leu	p.P381L	ENST00000263388	NM_000435.2	381	cCc/cTc						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17945446	17945446	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	125	721	0	ENST00000458235.1:c.2284T>C	p.Tyr762His	p.Y762H	ENST00000458235	NM_000215.3	762	Tat/Cat						NEWRECORD																																																																									
CCNE1	898	MSKCC	GRCh37	19	30303876	30303876	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	128	693	1	ENST00000262643.3:c.116del	p.Leu39CysfsTer36	p.L39Cfs*36	ENST00000262643	NM_001238.2	38	Ttt/tt						NEWRECORD																																																																									
AXL	558	MSKCC	GRCh37	19	41749573	41749573	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144824336		P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	185	785	3	ENST00000301178.4:c.1498G>A	p.Val500Met	p.V500M	ENST00000301178	NM_021913.4	500	Gtg/Atg						NEWRECORD																																																																									
ERF	2077	MSKCC	GRCh37	19	42754484	42754484	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	114	551	2	ENST00000222329.4:c.256C>T	p.Arg86Cys	p.R86C	ENST00000222329	NM_006494.2	86	Cgc/Tgc						NEWRECORD																																																																									
CENPA	1058	MSKCC	GRCh37	2	27015065	27015065	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	111	528	0	ENST00000335756.4:c.167A>C	p.Lys56Thr	p.K56T	ENST00000335756	NM_001809.3	56	aAg/aCg						NEWRECORD																																																																									
MSH2	4436	MSKCC	GRCh37	2	47707918	47707918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	118	555	0	ENST00000233146.2:c.2542G>A	p.Ala848Thr	p.A848T	ENST00000233146	NM_000251.2	848	Gcc/Acc						NEWRECORD																																																																									
TMEM127	55654	MSKCC	GRCh37	2	96919767	96919767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	104	583	1	ENST00000258439.3:c.496G>A	p.Gly166Arg	p.G166R	ENST00000258439	NM_001193304.2	166	Gga/Aga						NEWRECORD																																																																									
TMEM127	55654	MSKCC	GRCh37	2	96919816	96919816	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	90	518	2	ENST00000258439.3:c.447G>T	p.Trp149Cys	p.W149C	ENST00000258439	NM_001193304.2	149	tgG/tgT						NEWRECORD																																																																									
BCL2L1	598	MSKCC	GRCh37	20	30309790	30309790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	88	452	0	ENST00000307677.4:c.232C>T	p.Arg78Trp	p.R78W	ENST00000307677	NM_138578.1	78	Cgg/Tgg						NEWRECORD																																																																									
NCOA3	8202	MSKCC	GRCh37	20	46256416	46256416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	127	587	0	ENST00000371998.3:c.644C>A	p.Pro215His	p.P215H	ENST00000371998		215	cCt/cAt						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36164863	36164863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	148	782	1	ENST00000300305.3:c.1012G>A	p.Ala338Thr	p.A338T	ENST00000300305		338	Gcg/Acg						NEWRECORD																																																																									
MLH1	4292	MSKCC	GRCh37	3	37089029	37089030	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	131	367	0	ENST00000231790.2:c.1751_1752del	p.Asp584AlafsTer8	p.D584Afs*8	ENST00000231790	NM_000249.3	584	gAC/g						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55956163	55956163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	106	546	0	ENST00000263923.4:c.3152G>A	p.Arg1051Gln	p.R1051Q	ENST00000263923	NM_002253.2	1051	cGg/cAg						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106193850	106193850	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	89	391	0	ENST00000380013.4:c.4317del	p.Lys1439AsnfsTer9	p.K1439Nfs*9	ENST00000380013	NM_001127208.2	1438	Aaa/aa						NEWRECORD																																																																									
FGFR4	2264	MSKCC	GRCh37	5	176518768	176518768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	114	750	0	ENST00000292408.4:c.686C>T	p.Ala229Val	p.A229V	ENST00000292408	NM_213647.1	229	gCt/gTt						NEWRECORD																																																																									
IRF4	3662	MSKCC	GRCh37	6	394890	394890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	93	479	1	ENST00000380956.4:c.286C>T	p.Arg96Cys	p.R96C	ENST00000380956	NM_001195286.1	96	Cgc/Tgc						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117715402	117715402	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	85	531	0	ENST00000368508.3:c.1087del	p.Tyr363ThrfsTer6	p.Y363Tfs*6	ENST00000368508	NM_002944.2	363	Tac/ac						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8341817	8341817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	96	592	0	ENST00000356435.5:c.4823C>T	p.Ala1608Val	p.A1608V	ENST00000356435		1608	gCa/gTa						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	DEL	T	T	-			P-0012149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	43	311	0	ENST00000397752.3:c.3028+2del		p.X1010_splice	ENST00000397752	NM_000245.2	1010							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0013375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	884	1078	6	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112137082	112137082	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0013375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	190	490	0	ENST00000257430.4:c.834+2T>C		p.X278_splice	ENST00000257430	NM_000038.5	278							NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100933200	100933202	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0013375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	465	1135	3	ENST00000325455.5:c.2188_2190del	p.Val730del	p.V730del	ENST00000325455	NM_001202474.3	730	GTC/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0005894-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			47	77	561	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12016619	12016619	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005894-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			27	35	419	0	ENST00000353533.5:c.755G>T	p.Gly252Val	p.G252V	ENST00000353533	NM_003010.3	252	gGa/gTa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012992-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	117	547	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0013456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	108	534	1	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764146326		P-0013456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	123	680	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48586262	48586262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	119	451	0	ENST00000342988.3:c.931C>T	p.Gln311Ter	p.Q311*	ENST00000342988	NM_005359.5	311	Cag/Tag						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106157098	106157098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	148	733	0	ENST00000380013.4:c.1999C>T	p.His667Tyr	p.H667Y	ENST00000380013	NM_001127208.2	667	Cat/Tat						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176665281	176665281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	136	578	0	ENST00000439151.2:c.3965G>A	p.Arg1322Gln	p.R1322Q	ENST00000439151	NM_022455.4	1322	cGa/cAa						NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056434	26056434	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	117	269	0	ENST00000343677.2:c.223A>G	p.Lys75Glu	p.K75E	ENST00000343677	NM_005319.3	75	Aaa/Gaa						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221290	1221307	+	inframe_deletion	In_Frame_Del	DEL	CTACGCCATCCCGGGCGA	CTACGCCATCCCGGGCGA	-			P-0013456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	152	698	1	ENST00000326873.7:c.815_832del	p.Tyr272_Asp277del	p.Y272_D277del	ENST00000326873	NM_000455.4	271	agCTACGCCATCCCGGGCGAc/agc						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	95	333	2	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36231774	36231774	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	8	435	1	ENST00000300305.3:c.610C>T	p.Arg204Ter	p.R204*	ENST00000300305		204	Cga/Tga						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89624246	89624263	+	inframe_deletion	In_Frame_Del	DEL	AGATCGTTAGCAGAAACA	AGATCGTTAGCAGAAACA	-			P-0013957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			66	18	86	0	ENST00000371953.3:c.21_38del	p.Ile8_Lys13del	p.I8_K13del	ENST00000371953	NM_000314.4	7	gAGATCGTTAGCAGAAACAaa/gaa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0014119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	137	425	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114920413	114920413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	586	894	2	ENST00000543371.1:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000543371	NM_001198531.1	452	Ggg/Agg						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47039817	47039817	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0014119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	538	879	0	ENST00000329236.7:c.927-1G>A		p.X309_splice	ENST00000329236	NM_001204466.1	309							NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	192	591	1	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31022681	31022681	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	276	528	0	ENST00000375687.4:c.2167del	p.Ser723LeufsTer2	p.S723Lfs*2	ENST00000375687	NM_015338.5	722	ccT/cc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0010760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	35	321	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
CASP8	841	MSKCC	GRCh37	2	202149893	202149893	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	675	482	0	ENST00000358485.4:c.1334C>G	p.Ser445Ter	p.S445*	ENST00000358485	NM_001080125.1	445	tCa/tGa						NEWRECORD																																																																									
CASP8	841	MSKCC	GRCh37	2	202150039	202150039	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs1368296717		P-0010760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	577	340	0	ENST00000358485.4:c.1480C>T	p.Arg494Ter	p.R494*	ENST00000358485	NM_001080125.1	494	Cga/Tga						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117714396	117714396	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0010760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	69	465	0	ENST00000368508.3:c.1253C>G	p.Ser418Ter	p.S418*	ENST00000368508	NM_002944.2	418	tCa/tGa						NEWRECORD																																																																									
MYC	4609	MSKCC	GRCh37	8	128750863	128750863	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2910	1636	545	0	ENST00000377970.2:c.400C>G	p.Pro134Ala	p.P134A	ENST00000377970	NM_002467.4	134	Ccg/Gcg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0013565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	154	705	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	207	570	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	79	630	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1218492	1218492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	141	619	0	ENST00000326873.7:c.367C>T	p.Gln123Ter	p.Q123*	ENST00000326873	NM_000455.4	123	Cag/Tag						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67591248	67591248	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	75	570	0	ENST00000274335.5:c.1746G>A	p.Met582Ile	p.M582I	ENST00000274335		582	atG/atA						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	169	448	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187557230	187557230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	114	590	1	ENST00000441802.2:c.4132G>A	p.Gly1378Arg	p.G1378R	ENST00000441802	NM_005245.3	1378	Gga/Aga						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11098593	11098593	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	134	454	0	ENST00000344626.4:c.1111G>T	p.Glu371Ter	p.E371*	ENST00000344626	NM_003072.3	371	Gag/Tag						NEWRECORD																																																																									
GATA2	2624	MSKCC	GRCh37	3	128204944	128204944	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	168	586	1	ENST00000341105.2:c.497C>A	p.Ser166Tyr	p.S166Y	ENST00000341105	NM_032638.4	166	tCt/tAt						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142232481	142232481	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	89	380	0	ENST00000350721.4:c.4504-1G>T		p.X1502_splice	ENST00000350721	NM_001184.3	1502							NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86564776	86564776	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	199	623	0	ENST00000274376.6:c.508G>T	p.Ala170Ser	p.A170S	ENST00000274376	NM_002890.2	170	Gcc/Tcc						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50467823	50467823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	132	403	0	ENST00000331340.3:c.1058C>A	p.Pro353Gln	p.P353Q	ENST00000331340	NM_006060.4	353	cCg/cAg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55268959	55268959	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	243	556	0	ENST00000275493.2:c.3025G>T	p.Asp1009Tyr	p.D1009Y	ENST00000275493	NM_005228.3	1009	Gac/Tac						NEWRECORD																																																																									
PPP6C	5537	MSKCC	GRCh37	9	127951970	127951970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	95	564	0	ENST00000373547.4:c.28G>A	p.Val10Met	p.V10M	ENST00000373547	NM_002721.4	10	Gtg/Atg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89685277	89685277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	70	208	1	ENST00000371953.3:c.172G>T	p.Asp58Tyr	p.D58Y	ENST00000371953	NM_000314.4	58	Gat/Tat						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32439140	32439140	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	213	537	0	ENST00000332351.3:c.933A>C	p.Leu311Phe	p.L311F	ENST00000332351	NM_024426.4	311	ttA/ttC						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32953574	32953574	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	331	816	0	ENST00000380152.3:c.8875G>T	p.Glu2959Ter	p.E2959*	ENST00000380152		2959	Gaa/Taa						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857288	9857288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	113	570	0	ENST00000330684.3:c.4113C>A	p.His1371Gln	p.H1371Q	ENST00000330684	NM_001134407.1	1371	caC/caA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578499	7578499	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	105	510	0	ENST00000269305.4:c.431A>T	p.Gln144Leu	p.Q144L	ENST00000269305	NM_001126112.2	144	cAg/cTg						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29687716	29687716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	89	399	0	ENST00000358273.4:c.8372C>T	p.Ser2791Phe	p.S2791F	ENST00000358273	NM_001042492.2	2791	tCc/tTc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221228	1221228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	232	657	1	ENST00000326873.7:c.751G>T	p.Gly251Cys	p.G251C	ENST00000326873	NM_000455.4	251	Ggt/Tgt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610286	10610286	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	198	558	0	ENST00000171111.5:c.424A>G	p.Thr142Ala	p.T142A	ENST00000171111	NM_203500.1	142	Acg/Gcg						NEWRECORD																																																																									
CHEK2	11200	MSKCC	GRCh37	22	29108001	29108001	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	87	484	0	ENST00000328354.6:c.688G>C	p.Ala230Pro	p.A230P	ENST00000328354	NM_007194.3	230	Gcc/Ccc						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47039420	47039420	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	184	540	0	ENST00000329236.7:c.812T>G	p.Ile271Ser	p.I271S	ENST00000329236	NM_001204466.1	271	aTc/aGc						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42793118	42793126	+	inframe_deletion	In_Frame_Del	DEL	GGGCAGAAC	GGGCAGAAC	-			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	126	473	0	ENST00000575354.2:c.1012_1020del	p.Ala338_Arg340del	p.A338_R340del	ENST00000575354	NM_015125.3	337	gGGGCAGAACgg/ggg						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153245404	153245404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	172	328	0	ENST00000281708.4:c.1787C>T	p.Ser596Phe	p.S596F	ENST00000281708	NM_033632.3	596	tCt/tTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0012033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	60	353	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0012033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	26	160	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151873888	151873888	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	62	405	0	ENST00000262189.6:c.8650C>T	p.Arg2884Ter	p.R2884*	ENST00000262189	NM_170606.2	2884	Cga/Tga						NEWRECORD																																																																									
RAD21	5885	MSKCC	GRCh37	8	117864937	117864937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	141	334	0	ENST00000297338.2:c.1172G>T	p.Arg391Leu	p.R391L	ENST00000297338	NM_006265.2	391	cGc/cTc						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98212167	98212167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	50	335	0	ENST00000331920.6:c.3505G>A	p.Val1169Ile	p.V1169I	ENST00000331920	NM_000264.3	1169	Gtt/Att						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63554545	63554545	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	47	340	0	ENST00000307078.5:c.194C>G	p.Pro65Arg	p.P65R	ENST00000307078	NM_004655.3	65	cCg/cGg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174038	112174038	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	31	248	0	ENST00000257430.4:c.2747del	p.Thr916LysfsTer39	p.T916Kfs*39	ENST00000257430	NM_000038.5	916	aCa/aa						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	11984728	11984728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	118	261	1	ENST00000353533.5:c.274G>A	p.Glu92Lys	p.E92K	ENST00000353533	NM_003010.3	92	Gaa/Aaa						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575066	48575071	+	inframe_deletion	In_Frame_Del	DEL	GGAAAG	GGAAAG	-			P-0012117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	220	622	1	ENST00000342988.3:c.261_266del	p.Lys88_Gly89del	p.K88_G89del	ENST00000342988	NM_005359.5	87	cGGAAAGga/cga						NEWRECORD																																																																									
DAXX	1616	MSKCC	GRCh37	6	33287485	33287485	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	204	514	0	ENST00000374542.5:c.1612del	p.Leu538TrpfsTer6	p.L538Wfs*6	ENST00000374542	NM_001141970.1	538	Ctg/tg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0013484-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	312	456	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0013484-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	1018	668	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49037877	49037877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013484-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			44	187	656	0	ENST00000267163.4:c.2117G>A	p.Cys706Tyr	p.C706Y	ENST00000267163	NM_000321.2	706	tGt/tAt						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156849822	156849822	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013484-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1249	478	687	1	ENST00000524377.1:c.2078G>A	p.Trp693Ter	p.W693*	ENST00000524377	NM_002529.3	693	tGg/tAg						NEWRECORD																																																																									
IFNGR1	3459	MSKCC	GRCh37	6	137519538	137519538	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013484-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	231	674	0	ENST00000367739.4:c.1100C>G	p.Pro367Arg	p.P367R	ENST00000367739	NM_000416.2	367	cCg/cGg						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67644916	67644916	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013484-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	447	611	0	ENST00000264010.4:c.181G>T	p.Val61Leu	p.V61L	ENST00000264010	NM_006565.3	61	Gtg/Ttg						NEWRECORD																																																																									
ERG	2078	MSKCC	GRCh37	21	39755745	39755745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013484-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	251	395	0	ENST00000288319.7:c.1020G>T	p.Lys340Asn	p.K340N	ENST00000288319	NM_182918.3	340	aaG/aaT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577560	7577565	+	inframe_deletion	In_Frame_Del	DEL	AACTGT	AACTGT	-			P-0013484-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	464	657	0	ENST00000269305.4:c.716_721del	p.Asn239_Ser241delinsThr	p.N239_S241delinsT	ENST00000269305	NM_001126112.2	239	aACAGTTcc/acc						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52439292	52439292	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	165	383	0	ENST00000460680.1:c.950C>G	p.Ala317Gly	p.A317G	ENST00000460680	NM_004656.3	317	gCt/gGt						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187630229	187630229	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	65	385	0	ENST00000441802.2:c.753T>A	p.Asn251Lys	p.N251K	ENST00000441802	NM_005245.3	251	aaT/aaA						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145738713	145738713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	112	401	0	ENST00000428558.2:c.2351G>A	p.Arg784Gln	p.R784Q	ENST00000428558	NM_004260.3	784	cGg/cAg						NEWRECORD																																																																									
HRAS	3265	MSKCC	GRCh37	11	532697	532697	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	43	721	0	ENST00000311189.7:c.509A>C	p.Lys170Thr	p.K170T	ENST00000311189		170	aAg/aCg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1240	41	657	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578552	7578552	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0012283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	29	522	0	ENST00000269305.4:c.378C>G	p.Tyr126Ter	p.Y126*	ENST00000269305	NM_001126112.2	126	taC/taG						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0014527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	55	616	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579329	7579329	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912658		P-0014527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	63	692	0	ENST00000269305.4:c.358A>G	p.Lys120Glu	p.K120E	ENST00000269305	NM_001126112.2	120	Aag/Gag						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89624274	89624274	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0013245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	14	273	0	ENST00000371953.3:c.48T>A	p.Tyr16Ter	p.Y16*	ENST00000371953	NM_000314.4	16	taT/taA						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49437694	49437694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	261	942	4	ENST00000301067.7:c.5276G>A	p.Arg1759His	p.R1759H	ENST00000301067	NM_003482.3	1759	cGc/cAc						NEWRECORD																																																																									
FOXL2	668	MSKCC	GRCh37	3	138665213	138665213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	32	677	0	ENST00000330315.3:c.352G>A	p.Glu118Lys	p.E118K	ENST00000330315	NM_023067.3	118	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	43	692	2	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42796616	42796616	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	15	219	0	ENST00000575354.2:c.3173C>G	p.Ser1058Ter	p.S1058*	ENST00000575354	NM_015125.3	1058	tCa/tGa						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139412639	139412639	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1037236860		P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	19	531	2	ENST00000277541.6:c.1205C>T	p.Ser402Leu	p.S402L	ENST00000277541	NM_017617.3	402	tCg/tTg						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29551339	29551339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	25	481	0	ENST00000389048.3:c.1291C>A	p.Pro431Thr	p.P431T	ENST00000389048	NM_004304.4	431	Cca/Aca						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098809	178098809	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	51	715	0	ENST00000397062.3:c.236A>T	p.Glu79Val	p.E79V	ENST00000397062	NM_006164.4	79	gAg/gTg						NEWRECORD																																																																									
BCL6	604	MSKCC	GRCh37	3	187446859	187446859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	21	499	0	ENST00000232014.4:c.1334G>T	p.Arg445Leu	p.R445L	ENST00000232014	NM_001130845.1	445	cGg/cTg						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38962977	38962977	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	24	299	0	ENST00000357387.3:c.1566+1G>T		p.X522_splice	ENST00000357387	NM_152756.3	522							NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056554	26056554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	31	171	0	ENST00000343677.2:c.103G>T	p.Ala35Ser	p.A35S	ENST00000343677	NM_005319.3	35	Gcg/Tcg						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151864386	151864386	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	19	471	0	ENST00000262189.6:c.9595G>C	p.Glu3199Gln	p.E3199Q	ENST00000262189	NM_170606.2	3199	Gaa/Caa						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5123018	5123018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	28	383	0	ENST00000381652.3:c.3074C>T	p.Ser1025Leu	p.S1025L	ENST00000381652	NM_004972.3	1025	tCa/tTa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8518261	8518261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	38	432	0	ENST00000356435.5:c.1130G>T	p.Arg377Leu	p.R377L	ENST00000356435		377	cGc/cTc						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118376938	118376938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	24	458	1	ENST00000534358.1:c.10331C>T	p.Ser3444Leu	p.S3444L	ENST00000534358	NM_005933.3	3444	tCa/tTa						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95562665	95562665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	21	427	0	ENST00000343455.3:c.4592C>T	p.Ser1531Leu	p.S1531L	ENST00000343455	NM_177438.2	1531	tCa/tTa						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2124222	2124222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	17	490	0	ENST00000219476.3:c.2377G>A	p.Glu793Lys	p.E793K	ENST00000219476	NM_000548.3	793	Gag/Aag						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220384	1220393	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGATTGAC	GCTGATTGAC	-			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	63	519	0	ENST00000326873.7:c.478_487del	p.Leu160AlafsTer124	p.L160Afs*124	ENST00000326873	NM_000455.4	159	caGCTGATTGAC/ca						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47039328	47039328	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	42	709	0	ENST00000329236.7:c.724del	p.Ala242ProfsTer16	p.A242Pfs*16	ENST00000329236	NM_001204466.1	240	ctG/ct						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952006	178952006	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	30	639	0	ENST00000263967.3:c.3061T>C	p.Tyr1021His	p.Y1021H	ENST00000263967	NM_006218.2	1021	Tac/Cac						NEWRECORD																																																																									
EZH2	2146	MSKCC	GRCh37	7	148508728	148508728	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	11	721	0	ENST00000320356.2:c.1936T>C	p.Tyr646His	p.Y646H	ENST00000320356	NM_004456.4	646	Tac/Cac						NEWRECORD																																																																									
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0013562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	34	956	2	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53226171	53226171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	29	607	0	ENST00000375401.3:c.2678C>T	p.Ser893Leu	p.S893L	ENST00000375401	NM_004187.3	893	tCa/tTa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0014160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	63	497	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48593397	48593397	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	45	329	0	ENST00000342988.3:c.1148T>A	p.Ile383Lys	p.I383K	ENST00000342988	NM_005359.5	383	aTa/aAa						NEWRECORD																																																																									
EIF1AX	1964	MSKCC	GRCh37	X	20156719	20156719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	141	298	0	ENST00000379607.5:c.38G>T	p.Arg13Leu	p.R13L	ENST00000379607	NM_001412.3	13	cGc/cTc						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061231	38061231	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	169	501	1	ENST00000250448.2:c.758T>A	p.Met253Lys	p.M253K	ENST00000250448	NM_004496.3	253	aTg/aAg						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162746132	162746132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	127	460	0	ENST00000367921.3:c.2255G>A	p.Arg752His	p.R752H	ENST00000367921	NM_006182.2	752	cGc/cAc						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142231257	142231257	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	140	609	1	ENST00000350721.4:c.4697C>A	p.Thr1566Asn	p.T1566N	ENST00000350721	NM_001184.3	1566	aCc/aAc						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72829606	72829612	+	frameshift_variant	Frame_Shift_Del	DEL	GTTGCTT	GTTGCTT	-			P-0011046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	55	886	0	ENST00000268489.5:c.6969_6975del	p.Ser2324Ter	p.S2324*	ENST00000268489	NM_006885.3	2323	acAAGCAAC/ac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0012756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	364	571	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1222987	1222987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	181	278	0	ENST00000326873.7:c.924G>T	p.Trp308Cys	p.W308C	ENST00000326873	NM_000455.4	308	tgG/tgT						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115112499	115112499	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	81	467	0	ENST00000257566.3:c.1241C>A	p.Ala414Asp	p.A414D	ENST00000257566	NM_016569.3	414	gCt/gAt						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65304264	65304385	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CATTTCCTCCTGTTTAGAAAAAACATCCATCAGTCTGAGGCTGCCAAATGAGGGAACCATGGGAGAGGCAAGGGCACAGGATATGAGACAGAGGCCCTGAGGTGACGCCAGCTTCGCCCCTT	CATTTCCTCCTGTTTAGAAAAAACATCCATCAGTCTGAGGCTGCCAAATGAGGGAACCATGGGAGAGGCAAGGGCACAGGATATGAGACAGAGGCCCTGAGGTGACGCCAGCTTCGCCCCTT	-			P-0012756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	141	383	0	ENST00000342505.4:c.2843-113_2851del		p.X948_splice	ENST00000342505	NM_002227.2	948							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0011305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	86	170	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	147	258	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56435317	56435317	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200066146		P-0011305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	84	247	0	ENST00000407977.2:c.1820C>T	p.Ser607Leu	p.S607L	ENST00000407977		607	tCg/tTg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0011305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	55	159	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa						NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056314	26056314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	176	314	0	ENST00000343677.2:c.343G>A	p.Glu115Lys	p.E115K	ENST00000343677	NM_005319.3	115	Gaa/Aaa						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52437669	52437669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1516	162	726	1	ENST00000460680.1:c.1492G>A	p.Glu498Lys	p.E498K	ENST00000460680	NM_004656.3	498	Gag/Aag						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3820617	3820617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	114	268	0	ENST00000262367.5:c.2834C>T	p.Ser945Leu	p.S945L	ENST00000262367	NM_004380.2	945	tCg/tTg						NEWRECORD																																																																									
MYCN	4613	MSKCC	GRCh37	2	16085641	16085641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	116	324	1	ENST00000281043.3:c.817G>A	p.Glu273Lys	p.E273K	ENST00000281043	NM_005378.4	273	Gaa/Aaa						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52437215	52437215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1358	142	631	1	ENST00000460680.1:c.1829G>A	p.Arg610Lys	p.R610K	ENST00000460680	NM_004656.3	610	aGa/aAa						NEWRECORD																																																																									
SHQ1	55164	MSKCC	GRCh37	3	72866466	72866466	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	120	327	0	ENST00000325599.8:c.797G>C	p.Arg266Thr	p.R266T	ENST00000325599	NM_018130.2	266	aGa/aCa						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55136826	55136826	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1368411882		P-0011305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	77	390	0	ENST00000257290.5:c.1148G>A	p.Arg383His	p.R383H	ENST00000257290	NM_006206.4	383	cGt/cAt						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56179502	56179502	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	54	182	0	ENST00000399503.3:c.3815A>C	p.Lys1272Thr	p.K1272T	ENST00000399503	NM_005921.1	1272	aAa/aCa						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32188794	32188794	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	80	369	0	ENST00000375023.3:c.760G>C	p.Glu254Gln	p.E254Q	ENST00000375023	NM_004557.3	254	Gag/Cag						NEWRECORD																																																																									
TRAF2	7186	MSKCC	GRCh37	9	139818347	139818347	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	68	648	0	ENST00000247668.2:c.1182C>G	p.Ile394Met	p.I394M	ENST00000247668	NM_021138.3	394	atC/atG						NEWRECORD																																																																									
CDKN1B	1027	MSKCC	GRCh37	12	12871758	12871758	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0011305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	84	139	0	ENST00000228872.4:c.476-1G>T		p.X159_splice	ENST00000228872	NM_004064.3	159							NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95573948	95573948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	85	344	0	ENST00000343455.3:c.2801C>T	p.Pro934Leu	p.P934L	ENST00000343455	NM_177438.2	934	cCa/cTa						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95574232	95574232	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	72	321	0	ENST00000343455.3:c.2635C>G	p.Leu879Val	p.L879V	ENST00000343455	NM_177438.2	879	Cta/Gta						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31024322	31024334	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAACACCTCGT	GAGAACACCTCGT	-			P-0011305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	82	383	0	ENST00000375687.4:c.3807_3819del	p.Arg1270SerfsTer6	p.R1270Sfs*6	ENST00000375687	NM_015338.5	1269	tcGAGAACACCTCGT/tc						NEWRECORD																																																																									
RAF1	5894	MSKCC	GRCh37	3	12660071	12660071	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	100	444	0	ENST00000251849.4:c.150T>A	p.Asp50Glu	p.D50E	ENST00000251849	NM_002880.3	50	gaT/gaA						NEWRECORD																																																																									
EIF1AX	1964	MSKCC	GRCh37	X	20156711	20156711	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	309	466	0	ENST00000379607.5:c.46A>G	p.Lys16Glu	p.K16E	ENST00000379607	NM_001412.3	16	Aag/Gag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0014141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	50	528	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	97	335	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	143	615	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0013300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	178	657	0	ENST00000269305.4:c.993+1G>C		p.X331_splice	ENST00000269305	NM_001126112.2	331							NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112176962	112176962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	93	563	0	ENST00000257430.4:c.5671G>A	p.Glu1891Lys	p.E1891K	ENST00000257430	NM_000038.5	1891	Gag/Aag						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266086	41266304	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAA	AGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAA	-			P-0013300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	184	713	0	ENST00000349496.5:c.86_241+63del		p.X29_splice	ENST00000349496	NM_001904.3	29							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	34	247	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	111	518	1	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0010345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	45	302	2	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47127699	47127699	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0010345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	27	362	0	ENST00000409792.3:c.5383A>T	p.Lys1795Ter	p.K1795*	ENST00000409792	NM_014159.6	1795	Aag/Tag						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153251922	153251922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	94	773	0	ENST00000281708.4:c.1084G>A	p.Asp362Asn	p.D362N	ENST00000281708	NM_033632.3	362	Gat/Aat						NEWRECORD																																																																									
ERRFI1	54206	MSKCC	GRCh37	1	8073432	8073432	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1292	136	876	0	ENST00000377482.5:c.1227A>C	p.Lys409Asn	p.K409N	ENST00000377482	NM_018948.3	409	aaA/aaC						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16237721	16237721	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	62	417	0	ENST00000375759.3:c.1168G>T	p.Glu390Ter	p.E390*	ENST00000375759	NM_015001.2	390	Gaa/Taa						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16257860	16257860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	35	216	0	ENST00000375759.3:c.5125G>A	p.Asp1709Asn	p.D1709N	ENST00000375759	NM_015001.2	1709	Gat/Aat						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16258728	16258728	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	68	438	1	ENST00000375759.3:c.5993A>T	p.Lys1998Ile	p.K1998I	ENST00000375759	NM_015001.2	1998	aAa/aTa						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16265829	16265829	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	80	602	0	ENST00000375759.3:c.10902C>A	p.Phe3634Leu	p.F3634L	ENST00000375759	NM_015001.2	3634	ttC/ttA						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27105547	27105547	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	75	545	0	ENST00000324856.7:c.5158T>G	p.Phe1720Val	p.F1720V	ENST00000324856	NM_006015.4	1720	Ttc/Gtc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27105617	27105617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	89	562	1	ENST00000324856.7:c.5228C>T	p.Thr1743Met	p.T1743M	ENST00000324856	NM_006015.4	1743	aCg/aTg						NEWRECORD																																																																									
MPL	4352	MSKCC	GRCh37	1	43812205	43812205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	119	661	0	ENST00000372470.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000372470	NM_005373.2	357	cGa/cAa						NEWRECORD																																																																									
MUTYH	4595	MSKCC	GRCh37	1	45795028	45795028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	84	557	0	ENST00000372115.3:c.1558C>T	p.Arg520Trp	p.R520W	ENST00000372115	NM_001048171.1	520	Cgg/Tgg						NEWRECORD																																																																									
PIK3R3	8503	MSKCC	GRCh37	1	46509445	46509445	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	50	438	0	ENST00000262741.5:c.1286T>C	p.Val429Ala	p.V429A	ENST00000262741	NM_003629.3	429	gTg/gCg						NEWRECORD																																																																									
RAD54L	8438	MSKCC	GRCh37	1	46726651	46726651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	47	389	0	ENST00000371975.4:c.730G>A	p.Asp244Asn	p.D244N	ENST00000371975	NM_003579.3	244	Gat/Aat						NEWRECORD																																																																									
RIT1	6016	MSKCC	GRCh37	1	155874286	155874286	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	42	366	0	ENST00000368323.3:c.245T>G	p.Phe82Cys	p.F82C	ENST00000368323	NM_006912.5	82	tTt/tGt						NEWRECORD																																																																									
IL10	3586	MSKCC	GRCh37	1	206943240	206943240	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	63	329	0	ENST00000423557.1:c.379-1G>T		p.X127_splice	ENST00000423557	NM_000572.2	127							NEWRECORD																																																																									
H3F3A	3020	MSKCC	GRCh37	1	226253512	226253512	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	73	633	0	ENST00000366813.1:c.282+2T>C		p.X94_splice	ENST00000366813		94							NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243708816	243708816	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	60	420	0	ENST00000263826.5:c.1247A>C	p.Lys416Thr	p.K416T	ENST00000263826	NM_005465.4	416	aAa/aCa						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29606679	29606679	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs865931787		P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	64	492	0	ENST00000389048.3:c.1201C>T	p.Arg401Ter	p.R401*	ENST00000389048	NM_004304.4	401	Cga/Tga						NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48033396	48033396	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	82	465	0	ENST00000234420.5:c.3700G>T	p.Glu1234Ter	p.E1234*	ENST00000234420	NM_000179.2	1234	Gaa/Taa						NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48033767	48033767	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	47	400	2	ENST00000234420.5:c.3978G>T	p.Met1326Ile	p.M1326I	ENST00000234420	NM_000179.2	1326	atG/atT						NEWRECORD																																																																									
REL	5966	MSKCC	GRCh37	2	61121582	61121582	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	49	380	0	ENST00000295025.8:c.204G>T	p.Lys68Asn	p.K68N	ENST00000295025	NM_002908.2	68	aaG/aaT						NEWRECORD																																																																									
REL	5966	MSKCC	GRCh37	2	61149660	61149660	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	21	104	0	ENST00000295025.8:c.1850T>G	p.Phe617Cys	p.F617C	ENST00000295025	NM_002908.2	617	tTt/tGt						NEWRECORD																																																																									
ERCC3	2071	MSKCC	GRCh37	2	128038082	128038082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	87	470	0	ENST00000285398.2:c.1468G>A	p.Glu490Lys	p.E490K	ENST00000285398	NM_000122.1	490	Gaa/Aaa						NEWRECORD																																																																									
ERCC3	2071	MSKCC	GRCh37	2	128038127	128038127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	87	440	0	ENST00000285398.2:c.1423G>T	p.Asp475Tyr	p.D475Y	ENST00000285398	NM_000122.1	475	Gac/Tac						NEWRECORD																																																																									
PMS1	5378	MSKCC	GRCh37	2	190670480	190670480	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	35	336	0	ENST00000441310.2:c.418G>A	p.Gly140Ser	p.G140S	ENST00000441310	NM_000534.4	140	Ggt/Agt						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198267694	198267694	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	63	311	0	ENST00000335508.6:c.1785G>T	p.Glu595Asp	p.E595D	ENST00000335508	NM_012433.2	595	gaG/gaT						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198273266	198273266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	70	418	0	ENST00000335508.6:c.944G>A	p.Arg315Gln	p.R315Q	ENST00000335508	NM_012433.2	315	cGa/cAa						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198281544	198281544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	84	555	0	ENST00000335508.6:c.587G>A	p.Arg196Gln	p.R196Q	ENST00000335508	NM_012433.2	196	cGa/cAa						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198285173	198285173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	73	448	0	ENST00000335508.6:c.394C>T	p.Arg132Cys	p.R132C	ENST00000335508	NM_012433.2	132	Cgt/Tgt						NEWRECORD																																																																									
CASP8	841	MSKCC	GRCh37	2	202131412	202131412	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1339962485		P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	60	413	0	ENST00000358485.4:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000358485	NM_001080125.1	127	cGa/cAa						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212295800	212295800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	64	444	3	ENST00000342788.4:c.2513G>A	p.Arg838Gln	p.R838Q	ENST00000342788	NM_005235.2	838	cGa/cAa						NEWRECORD																																																																									
CUL3	8452	MSKCC	GRCh37	2	225342954	225342954	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	88	564	1	ENST00000264414.4:c.2138C>A	p.Ser713Tyr	p.S713Y	ENST00000264414	NM_003590.4	713	tCt/tAt						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30691768	30691768	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	59	437	1	ENST00000359013.4:c.345G>T	p.Lys115Asn	p.K115N	ENST00000359013	NM_001024847.2	115	aaG/aaT						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41277233	41277233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	66	384	0	ENST00000349496.5:c.1702G>A	p.Glu568Lys	p.E568K	ENST00000349496	NM_001904.3	568	Gaa/Aaa						NEWRECORD																																																																									
MITF	4286	MSKCC	GRCh37	3	70008548	70008548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	66	303	0	ENST00000352241.4:c.1138C>T	p.Arg380Trp	p.R380W	ENST00000352241	NM_198159.2	380	Cgg/Tgg						NEWRECORD																																																																									
MITF	4286	MSKCC	GRCh37	3	70014371	70014371	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1097	92	752	0	ENST00000352241.4:c.1535G>T	p.Ser512Ile	p.S512I	ENST00000352241	NM_198159.2	512	aGc/aTc						NEWRECORD																																																																									
SHQ1	55164	MSKCC	GRCh37	3	72842110	72842110	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	67	326	0	ENST00000325599.8:c.1138G>T	p.Asp380Tyr	p.D380Y	ENST00000325599	NM_018130.2	380	Gat/Tat						NEWRECORD																																																																									
SHQ1	55164	MSKCC	GRCh37	3	72866425	72866425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	74	421	0	ENST00000325599.8:c.838C>A	p.Leu280Met	p.L280M	ENST00000325599	NM_018130.2	280	Ctg/Atg						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134670431	134670431	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	43	378	0	ENST00000398015.3:c.342C>A	p.Tyr114Ter	p.Y114*	ENST00000398015	NM_004441.4	114	taC/taA						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134968251	134968251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	56	572	0	ENST00000398015.3:c.2764G>A	p.Ala922Thr	p.A922T	ENST00000398015	NM_004441.4	922	Gcc/Acc						NEWRECORD																																																																									
PIK3CB	5291	MSKCC	GRCh37	3	138409963	138409963	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	41	319	0	ENST00000289153.2:c.1915C>A	p.Leu639Ile	p.L639I	ENST00000289153	NM_006219.2	639	Ctt/Att						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142168390	142168390	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	53	394	0	ENST00000350721.4:c.7816C>T	p.Arg2606Ter	p.R2606*	ENST00000350721	NM_001184.3	2606	Cga/Tga						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142261526	142261526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	63	424	0	ENST00000350721.4:c.3431G>A	p.Gly1144Asp	p.G1144D	ENST00000350721	NM_001184.3	1144	gGc/gAc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1041	85	628	0	ENST00000263967.3:c.333G>T	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaT						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178922300	178922300	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	52	348	1	ENST00000263967.3:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000263967	NM_006218.2	357	Cga/Tga						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	72	394	1	ENST00000263967.3:c.3012G>T	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atT						NEWRECORD																																																																									
DCUN1D1	54165	MSKCC	GRCh37	3	182665058	182665058	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	70	550	0	ENST00000292782.4:c.668T>G	p.Ile223Ser	p.I223S	ENST00000292782	NM_020640.2	223	aTt/aGt						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185181425	185181425	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1435276633		P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	87	503	1	ENST00000265026.3:c.1366C>T	p.Arg456Ter	p.R456*	ENST00000265026	NM_004721.4	456	Cga/Tga						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55133597	55133597	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	59	423	0	ENST00000257290.5:c.901G>T	p.Glu301Ter	p.E301*	ENST00000257290	NM_006206.4	301	Gaa/Taa						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55595622	55595622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	41	240	0	ENST00000288135.5:c.2112G>T	p.Lys704Asn	p.K704N	ENST00000288135	NM_000222.2	704	aaG/aaT						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55599248	55599248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	61	331	0	ENST00000288135.5:c.2374G>A	p.Asp792Asn	p.D792N	ENST00000288135	NM_000222.2	792	Gac/Aac						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55603385	55603385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	62	566	2	ENST00000288135.5:c.2741G>T	p.Arg914Ile	p.R914I	ENST00000288135	NM_000222.2	914	aGa/aTa						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55961106	55961106	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	65	447	0	ENST00000263923.4:c.2834T>G	p.Phe945Cys	p.F945C	ENST00000263923	NM_002253.2	945	tTc/tGc						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55981579	55981579	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	37	261	1	ENST00000263923.4:c.359-1G>T		p.X120_splice	ENST00000263923	NM_002253.2	120							NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66286183	66286183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	71	513	0	ENST00000273854.3:c.1503G>T	p.Glu501Asp	p.E501D	ENST00000273854	NM_004439.5	501	gaG/gaT						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66467461	66467461	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	48	370	0	ENST00000273854.3:c.808G>T	p.Glu270Ter	p.E270*	ENST00000273854	NM_004439.5	270	Gaa/Taa						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106157965	106157965	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	29	242	1	ENST00000380013.4:c.2866C>A	p.Leu956Ile	p.L956I	ENST00000380013	NM_001127208.2	956	Ctc/Atc						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106196499	106196499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	69	531	0	ENST00000380013.4:c.4832C>A	p.Ser1611Tyr	p.S1611Y	ENST00000380013	NM_001127208.2	1611	tCt/tAt						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	76	470	2	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187539690	187539690	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	77	470	1	ENST00000441802.2:c.8050G>T	p.Glu2684Ter	p.E2684*	ENST00000441802	NM_005245.3	2684	Gaa/Taa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187541523	187541523	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	110	544	2	ENST00000441802.2:c.6217G>T	p.Asp2073Tyr	p.D2073Y	ENST00000441802	NM_005245.3	2073	Gac/Tac						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187542753	187542753	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200613891		P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	80	505	0	ENST00000441802.2:c.4987G>A	p.Ala1663Thr	p.A1663T	ENST00000441802	NM_005245.3	1663	Gcc/Acc						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187542860	187542860	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767331775		P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	67	382	0	ENST00000441802.2:c.4880G>A	p.Arg1627Gln	p.R1627Q	ENST00000441802	NM_005245.3	1627	cGa/cAa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187557810	187557810	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	77	558	0	ENST00000441802.2:c.3901T>G	p.Phe1301Val	p.F1301V	ENST00000441802	NM_005245.3	1301	Ttc/Gtc						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	32	185	0				ENST00000310581	NM_198253.2								NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35876216	35876216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	74	421	2	ENST00000303115.3:c.1008G>T	p.Glu336Asp	p.E336D	ENST00000303115	NM_002185.3	336	gaG/gaT						NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35876581	35876581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	26	185	0	ENST00000303115.3:c.1373A>G	p.Asn458Ser	p.N458S	ENST00000303115	NM_002185.3	458	aAc/aGc						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38950561	38950561	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201384226		P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1017	80	570	0	ENST00000357387.3:c.3389G>A	p.Arg1130Gln	p.R1130Q	ENST00000357387	NM_152756.3	1130	cGa/cAa						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67591076	67591076	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	51	286	0	ENST00000274335.5:c.1669C>T	p.Arg557Ter	p.R557*	ENST00000274335		557	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	52	336	0	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	57	544	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175897	112175897	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	50	301	0	ENST00000257430.4:c.4606G>T	p.Glu1536Ter	p.E1536*	ENST00000257430	NM_000038.5	1536	Gaa/Taa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112177049	112177049	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	66	637	0	ENST00000257430.4:c.5758C>T	p.Arg1920Ter	p.R1920*	ENST00000257430	NM_000038.5	1920	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112177788	112177788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	57	266	1	ENST00000257430.4:c.6497G>A	p.Arg2166Gln	p.R2166Q	ENST00000257430	NM_000038.5	2166	cGa/cAa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112177901	112177901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	127	339	0	ENST00000257430.4:c.6610C>T	p.Arg2204Ter	p.R2204*	ENST00000257430	NM_000038.5	2204	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	66	509	0	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112178211	112178211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	93	523	1	ENST00000257430.4:c.6920C>T	p.Ser2307Leu	p.S2307L	ENST00000257430	NM_000038.5	2307	tCg/tTg						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131953874	131953874	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	66	361	0	ENST00000265335.6:c.3277C>T	p.Arg1093Ter	p.R1093*	ENST00000265335		1093	Cga/Tga						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149502666	149502666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	45	387	0	ENST00000261799.4:c.2122C>T	p.Arg708Cys	p.R708C	ENST00000261799	NM_002609.3	708	Cgc/Tgc						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180030290	180030290	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	86	615	0	ENST00000261937.6:c.3994T>C	p.Phe1332Leu	p.F1332L	ENST00000261937	NM_182925.4	1332	Ttt/Ctt						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180057642	180057642	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150416750		P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	88	603	3	ENST00000261937.6:c.313G>A	p.Asp105Asn	p.D105N	ENST00000261937	NM_182925.4	105	Gac/Aac						NEWRECORD																																																																									
PNRC1	10957	MSKCC	GRCh37	6	89793647	89793647	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	73	443	0	ENST00000336032.3:c.716C>A	p.Ser239Tyr	p.S239Y	ENST00000336032	NM_006813.2	239	tCt/tAt						NEWRECORD																																																																									
PNRC1	10957	MSKCC	GRCh37	6	89793716	89793716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	70	431	0	ENST00000336032.3:c.785C>T	p.Ser262Leu	p.S262L	ENST00000336032	NM_006813.2	262	tCg/tTg						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	93965719	93965719	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	93	684	0	ENST00000369303.4:c.2209G>T	p.Gly737Ter	p.G737*	ENST00000369303	NM_004440.3	737	Gga/Tga						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	93968000	93968000	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	90	535	0	ENST00000369303.4:c.1927G>T	p.Glu643Ter	p.E643*	ENST00000369303	NM_004440.3	643	Gaa/Taa						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	94120845	94120845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1110	110	707	1	ENST00000369303.4:c.206G>A	p.Arg69Gln	p.R69Q	ENST00000369303	NM_004440.3	69	cGa/cAa						NEWRECORD																																																																									
PRDM1	639	MSKCC	GRCh37	6	106536164	106536164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	85	470	1	ENST00000369096.4:c.131C>T	p.Ala44Val	p.A44V	ENST00000369096	NM_001198.3	44	gCg/gTg						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117629975	117629975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	59	406	0	ENST00000368508.3:c.6551G>T	p.Arg2184Ile	p.R2184I	ENST00000368508	NM_002944.2	2184	aGa/aTa						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117665261	117665261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	81	412	0	ENST00000368508.3:c.4486G>T	p.Asp1496Tyr	p.D1496Y	ENST00000368508	NM_002944.2	1496	Gac/Tac						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117715350	117715350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	90	386	0	ENST00000368508.3:c.1139G>A	p.Arg380Lys	p.R380K	ENST00000368508	NM_002944.2	380	aGa/aAa						NEWRECORD																																																																									
IFNGR1	3459	MSKCC	GRCh37	6	137522061	137522061	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	30	195	0	ENST00000367739.4:c.818T>G	p.Ile273Ser	p.I273S	ENST00000367739	NM_000416.2	273	aTt/aGt						NEWRECORD																																																																									
TNFAIP3	7128	MSKCC	GRCh37	6	138200479	138200479	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	39	260	0	ENST00000237289.4:c.1897G>T	p.Glu633Ter	p.E633*	ENST00000237289	NM_001270507.1	633	Gaa/Taa						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150001374	150001374	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	89	541	0	ENST00000253339.5:c.2230C>T	p.Arg744Ter	p.R744*	ENST00000253339		744	Cga/Tga						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150004834	150004834	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	40	270	1	ENST00000253339.5:c.1391C>A	p.Ser464Tyr	p.S464Y	ENST00000253339		464	tCt/tAt						NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	162622230	162622230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	87	443	0	ENST00000366898.1:c.467G>T	p.Arg156Ile	p.R156I	ENST00000366898	NM_004562.2	156	aGa/aTa						NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	162683713	162683713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	73	463	1	ENST00000366898.1:c.256G>A	p.Asp86Asn	p.D86N	ENST00000366898	NM_004562.2	86	Gac/Aac						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41729390	41729390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1002	123	772	2	ENST00000242208.4:c.1139G>A	p.Gly380Asp	p.G380D	ENST00000242208	NM_002192.2	380	gGc/gAc						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41739756	41739756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	72	815	1	ENST00000242208.4:c.217G>A	p.Asp73Asn	p.D73N	ENST00000242208	NM_002192.2	73	Gat/Aat						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508490	106508490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	13	132	0	ENST00000359195.3:c.484G>A	p.Val162Ile	p.V162I	ENST00000359195	NM_002649.2	162	Gtc/Atc						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128845057	128845057	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	85	547	0	ENST00000249373.3:c.551A>G	p.Asn184Ser	p.N184S	ENST00000249373	NM_005631.4	184	aAc/aGc						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128846196	128846196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	78	562	1	ENST00000249373.3:c.1126C>A	p.Leu376Ile	p.L376I	ENST00000249373	NM_005631.4	376	Ctt/Att						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453130	140453130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	51	292	0	ENST00000288602.6:c.1805C>A	p.Ser602Tyr	p.S602Y	ENST00000288602	NM_004333.4	602	tCt/tAt						NEWRECORD																																																																									
EZH2	2146	MSKCC	GRCh37	7	148543633	148543633	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	79	381	0	ENST00000320356.2:c.175G>T	p.Glu59Ter	p.E59*	ENST00000320356	NM_004456.4	59	Gaa/Taa						NEWRECORD																																																																									
RHEB	6009	MSKCC	GRCh37	7	151188035	151188035	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1072	125	583	0	ENST00000262187.5:c.118G>T	p.Glu40Ter	p.E40*	ENST00000262187	NM_005614.3	40	Gaa/Taa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151884866	151884866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	70	437	0	ENST00000262189.6:c.4727C>A	p.Ser1576Tyr	p.S1576Y	ENST00000262189	NM_170606.2	1576	tCt/tAt						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151919101	151919101	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	39	341	0	ENST00000262189.6:c.3484A>C	p.Lys1162Gln	p.K1162Q	ENST00000262189	NM_170606.2	1162	Aaa/Caa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	152132768	152132768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	48	362	1	ENST00000262189.6:c.104G>T	p.Arg35Ile	p.R35I	ENST00000262189	NM_170606.2	35	aGa/aTa						NEWRECORD																																																																									
XRCC2	7516	MSKCC	GRCh37	7	152346284	152346284	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1123	120	746	0	ENST00000359321.1:c.286C>A	p.Leu96Ile	p.L96I	ENST00000359321	NM_005431.1	96	Ctt/Att						NEWRECORD																																																																									
NBN	4683	MSKCC	GRCh37	8	90983450	90983450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	55	340	0	ENST00000265433.3:c.653G>T	p.Arg218Ile	p.R218I	ENST00000265433	NM_002485.4	218	aGa/aTa						NEWRECORD																																																																									
RAD21	5885	MSKCC	GRCh37	8	117862893	117862893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	60	475	0	ENST00000297338.2:c.1584G>T	p.Glu528Asp	p.E528D	ENST00000297338	NM_006265.2	528	gaG/gaT						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5055687	5055687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	47	272	0	ENST00000381652.3:c.955G>A	p.Asp319Asn	p.D319N	ENST00000381652	NM_004972.3	319	Gat/Aat						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8471050	8471050	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	82	419	0	ENST00000356435.5:c.3449C>A	p.Ser1150Tyr	p.S1150Y	ENST00000356435		1150	tCt/tAt						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8484161	8484161	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	75	515	0	ENST00000356435.5:c.3371T>G	p.Ile1124Ser	p.I1124S	ENST00000356435		1124	aTt/aGt						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8500759	8500759	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	45	249	0	ENST00000356435.5:c.2123A>C	p.Glu708Ala	p.E708A	ENST00000356435		708	gAa/gCa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8517878	8517878	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	73	540	0	ENST00000356435.5:c.1513A>C	p.Ser505Arg	p.S505R	ENST00000356435		505	Agt/Cgt						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87342807	87342807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	51	365	0	ENST00000277120.3:c.1092G>T	p.Lys364Asn	p.K364N	ENST00000277120		364	aaG/aaT						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98220400	98220400	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	57	457	0	ENST00000331920.6:c.3063C>A	p.Tyr1021Ter	p.Y1021*	ENST00000331920	NM_000264.3	1021	taC/taA						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63810751	63810751	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143185576		P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	69	380	1	ENST00000279873.7:c.838G>A	p.Val280Ile	p.V280I	ENST00000279873	NM_032199.2	280	Gtt/Att						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70405725	70405725	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	46	348	0	ENST00000373644.4:c.3239A>C	p.Gln1080Pro	p.Q1080P	ENST00000373644	NM_030625.2	1080	cAg/cCg						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70405915	70405915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	102	538	3	ENST00000373644.4:c.3429G>T	p.Lys1143Asn	p.K1143N	ENST00000373644	NM_030625.2	1143	aaG/aaT						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114920404	114920404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	116	578	1	ENST00000543371.1:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000543371	NM_001198531.1	449	Gca/Aca						NEWRECORD																																																																									
MYOD1	4654	MSKCC	GRCh37	11	17741781	17741781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	56	354	0	ENST00000250003.3:c.452G>A	p.Arg151His	p.R151H	ENST00000250003	NM_002478.4	151	cGc/cAc						NEWRECORD																																																																									
MYOD1	4654	MSKCC	GRCh37	11	17742907	17742907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	33	251	0	ENST00000250003.3:c.815C>T	p.Ala272Val	p.A272V	ENST00000250003	NM_002478.4	272	gCg/gTg						NEWRECORD																																																																									
FGF3	2248	MSKCC	GRCh37	11	69625274	69625274	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	87	591	0	ENST00000334134.2:c.519G>T	p.Gln173His	p.Q173H	ENST00000334134	NM_005247.2	173	caG/caT						NEWRECORD																																																																									
FGF3	2248	MSKCC	GRCh37	11	69631101	69631101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	73	607	1	ENST00000334134.2:c.311G>A	p.Arg104Gln	p.R104Q	ENST00000334134	NM_005247.2	104	cGa/cAa						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100999560	100999560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	109	728	0	ENST00000325455.5:c.242C>T	p.Ser81Leu	p.S81L	ENST00000325455	NM_001202474.3	81	tCg/tTg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108098519	108098519	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	33	236	0	ENST00000278616.4:c.89T>G	p.Phe30Cys	p.F30C	ENST00000278616	NM_000051.3	30	tTt/tGt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108204660	108204660	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	43	219	0	ENST00000278616.4:c.7975T>G	p.Leu2659Val	p.L2659V	ENST00000278616	NM_000051.3	2659	Tta/Gta						NEWRECORD																																																																									
ETV6	2120	MSKCC	GRCh37	12	11992143	11992143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	62	440	0	ENST00000396373.4:c.233C>A	p.Ser78Tyr	p.S78Y	ENST00000396373	NM_001987.4	78	tCt/tAt						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18435486	18435486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	58	318	0	ENST00000266497.5:c.471G>T	p.Glu157Asp	p.E157D	ENST00000266497		157	gaG/gaT						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18793432	18793432	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187869576		P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	107	510	1	ENST00000266497.5:c.4129C>T	p.Arg1377Cys	p.R1377C	ENST00000266497		1377	Cgt/Tgt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	49	344	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca						NEWRECORD																																																																									
H3F3C	440093	MSKCC	GRCh37	12	31944867	31944867	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	68	422	0	ENST00000340398.3:c.234C>A	p.Phe78Leu	p.F78L	ENST00000340398	NM_001013699.2	78	ttC/ttA						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49445815	49445815	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	108	738	1	ENST00000301067.7:c.1651G>T	p.Glu551Ter	p.E551*	ENST00000301067	NM_003482.3	551	Gaa/Taa						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57861149	57861149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	123	701	0	ENST00000228682.2:c.946G>A	p.Glu316Lys	p.E316K	ENST00000228682	NM_005269.2	316	Gaa/Aaa						NEWRECORD																																																																									
SH2B3	10019	MSKCC	GRCh37	12	111885467	111885467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	84	574	0	ENST00000341259.2:c.1244G>A	p.Arg415His	p.R415H	ENST00000341259	NM_005475.2	415	cGc/cAc						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133218920	133218920	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	109	600	0	ENST00000320574.5:c.5016C>A	p.Phe1672Leu	p.F1672L	ENST00000320574	NM_006231.2	1672	ttC/ttA						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133249847	133249847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	36	387	0	ENST00000320574.5:c.1376C>T	p.Ser459Phe	p.S459F	ENST00000320574	NM_006231.2	459	tCt/tTt						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133253217	133253217	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	72	447	0	ENST00000320574.5:c.824A>G	p.Asp275Gly	p.D275G	ENST00000320574	NM_006231.2	275	gAc/gGc						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28636175	28636175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	57	454	3	ENST00000241453.7:c.197C>T	p.Ala66Val	p.A66V	ENST00000241453	NM_004119.2	66	gCg/gTg						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28644705	28644705	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	55	350	0	ENST00000241453.7:c.88C>A	p.Leu30Met	p.L30M	ENST00000241453	NM_004119.2	30	Ctg/Atg						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28893587	28893587	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	55	429	0	ENST00000282397.4:c.3259G>T	p.Val1087Leu	p.V1087L	ENST00000282397	NM_002019.4	1087	Gta/Tta						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28895689	28895689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	52	462	0	ENST00000282397.4:c.3085C>A	p.Leu1029Ile	p.L1029I	ENST00000282397	NM_002019.4	1029	Ctt/Att						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28963966	28963966	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	83	480	0	ENST00000282397.4:c.1936G>T	p.Glu646Ter	p.E646*	ENST00000282397	NM_002019.4	646	Gaa/Taa						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32911141	32911141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1287	145	785	1	ENST00000380152.3:c.2649C>A	p.Phe883Leu	p.F883L	ENST00000380152		883	ttC/ttA						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32911354	32911354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1207	111	785	4	ENST00000380152.3:c.2862G>T	p.Glu954Asp	p.E954D	ENST00000380152		954	gaG/gaT						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32912323	32912323	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1002	88	610	0	ENST00000380152.3:c.3831T>G	p.Asn1277Lys	p.N1277K	ENST00000380152		1277	aaT/aaG						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32913309	32913309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1306	133	801	0	ENST00000380152.3:c.4817C>A	p.Ser1606Tyr	p.S1606Y	ENST00000380152		1606	tCt/tAt						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32913522	32913522	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1219	106	715	4	ENST00000380152.3:c.5030G>T	p.Arg1677Ile	p.R1677I	ENST00000380152		1677	aGa/aTa						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32914505	32914505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1217	93	772	2	ENST00000380152.3:c.6013G>T	p.Asp2005Tyr	p.D2005Y	ENST00000380152		2005	Gat/Tat						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32914877	32914877	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1240	133	783	2	ENST00000380152.3:c.6385G>T	p.Glu2129Ter	p.E2129*	ENST00000380152		2129	Gaa/Taa						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32937339	32937339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	49	316	1	ENST00000380152.3:c.8000G>T	p.Ser2667Ile	p.S2667I	ENST00000380152		2667	aGc/aTc						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48941654	48941654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	56	302	1	ENST00000267163.4:c.964G>A	p.Glu322Lys	p.E322K	ENST00000267163	NM_000321.2	322	Gaa/Aaa						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48953748	48953748	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759079385		P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	46	304	0	ENST00000267163.4:c.1351C>T	p.Arg451Cys	p.R451C	ENST00000267163	NM_000321.2	451	Cgc/Tgc						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49030396	49030396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	44	331	1	ENST00000267163.4:c.1871C>A	p.Ser624Tyr	p.S624Y	ENST00000267163	NM_000321.2	624	tCt/tAt						NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103504590	103504590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	90	493	0	ENST00000355739.4:c.211C>T	p.Arg71Cys	p.R71C	ENST00000355739	NM_000123.3	71	Cgt/Tgt						NEWRECORD																																																																									
NFKBIA	4792	MSKCC	GRCh37	14	35873726	35873726	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	95	595	2	ENST00000216797.5:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000216797	NM_020529.2	42	tAc/tGc						NEWRECORD																																																																									
TSHR	7253	MSKCC	GRCh37	14	81558897	81558897	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	70	448	0	ENST00000298171.2:c.490A>G	p.Met164Val	p.M164V	ENST00000298171	NM_000369.2	164	Atg/Gtg						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95574344	95574344	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	51	393	0	ENST00000343455.3:c.2523A>C	p.Gln841His	p.Q841H	ENST00000343455	NM_177438.2	841	caA/caC						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95582831	95582831	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	59	398	0	ENST00000343455.3:c.1711A>C	p.Ser571Arg	p.S571R	ENST00000343455	NM_177438.2	571	Agt/Cgt						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95596487	95596487	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	49	336	0	ENST00000343455.3:c.481A>C	p.Asn161His	p.N161H	ENST00000343455	NM_177438.2	161	Aat/Cat						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42050032	42050032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	74	484	0	ENST00000219905.7:c.7186C>T	p.Arg2396Ter	p.R2396*	ENST00000219905	NM_001164273.1	2396	Cga/Tga						NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45007743	45007743	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	64	379	2	ENST00000558401.1:c.190G>T	p.Glu64Ter	p.E64*	ENST00000558401	NM_004048.2	64	Gag/Tag						NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45007814	45007814	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	60	377	0	ENST00000558401.1:c.261C>A	p.Tyr87Ter	p.Y87*	ENST00000558401	NM_004048.2	87	taC/taA						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67473723	67473723	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223740		P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	54	488	0	ENST00000327367.4:c.803G>A	p.Arg268His	p.R268H	ENST00000327367	NM_005902.3	268	cGc/cAc						NEWRECORD																																																																									
CD276	80381	MSKCC	GRCh37	15	73996053	73996053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	31	325	0	ENST00000318443.5:c.787G>A	p.Asp263Asn	p.D263N	ENST00000318443	NM_001024736.1	263	Gat/Aat						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88423598	88423598	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	54	445	0	ENST00000360948.2:c.2237A>C	p.Lys746Thr	p.K746T	ENST00000360948	NM_001012338.2	746	aAg/aCg						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88727513	88727513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374069724		P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	50	515	1	ENST00000360948.2:c.266G>A	p.Arg89His	p.R89H	ENST00000360948	NM_001012338.2	89	cGc/cAc						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91292902	91292902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	57	349	0	ENST00000355112.3:c.404C>T	p.Ala135Val	p.A135V	ENST00000355112	NM_000057.2	135	gCt/gTt						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3820846	3820846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	46	389	1	ENST00000262367.5:c.2605C>T	p.Leu869Phe	p.L869F	ENST00000262367	NM_004380.2	869	Ctc/Ttc						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3900884	3900884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	85	497	0	ENST00000262367.5:c.212C>T	p.Ser71Leu	p.S71L	ENST00000262367	NM_004380.2	71	tCg/tTg						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9923465	9923465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	64	458	2	ENST00000330684.3:c.1822C>A	p.Leu608Ile	p.L608I	ENST00000330684	NM_001134407.1	608	Ctt/Att						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72829797	72829797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	113	808	0	ENST00000268489.5:c.6784G>A	p.Asp2262Asn	p.D2262N	ENST00000268489	NM_006885.3	2262	Gat/Aat						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72845844	72845844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	134	803	0	ENST00000268489.5:c.3623C>T	p.Ser1208Leu	p.S1208L	ENST00000268489	NM_006885.3	1208	tCg/tTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576889	7576889	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	76	446	0	ENST00000269305.4:c.957G>T	p.Lys319Asn	p.K319N	ENST00000269305	NM_001126112.2	319	aaG/aaT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	66	478	0	ENST00000269305.4:c.706T>G	p.Tyr236Asp	p.Y236D	ENST00000269305	NM_001126112.2	236	Tac/Gac						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	11984773	11984773	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	41	248	1	ENST00000353533.5:c.319G>T	p.Glu107Ter	p.E107*	ENST00000353533	NM_003010.3	107	Gaa/Taa						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15942944	15942944	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	70	480	0	ENST00000268712.3:c.6758C>A	p.Ser2253Tyr	p.S2253Y	ENST00000268712	NM_006311.3	2253	tCt/tAt						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16004601	16004601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	48	457	1	ENST00000268712.3:c.2653G>A	p.Ala885Thr	p.A885T	ENST00000268712	NM_006311.3	885	Gct/Act						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29592269	29592269	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	70	399	0	ENST00000358273.4:c.4747G>T	p.Glu1583Ter	p.E1583*	ENST00000358273	NM_001042492.2	1583	Gaa/Taa						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29684332	29684332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	89	508	0	ENST00000358273.4:c.7915C>A	p.Leu2639Ile	p.L2639I	ENST00000358273	NM_001042492.2	2639	Ctt/Att						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59763428	59763428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	64	313	0	ENST00000259008.2:c.2674C>A	p.Leu892Ile	p.L892I	ENST00000259008	NM_032043.2	892	Ctt/Att						NEWRECORD																																																																									
CD79B	974	MSKCC	GRCh37	17	62007205	62007205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	67	501	1	ENST00000392795.3:c.477G>T	p.Lys159Asn	p.K159N	ENST00000392795	NM_001039933.1	159	aaG/aaT						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63537616	63537616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	91	578	0	ENST00000307078.5:c.1016G>A	p.Arg339His	p.R339H	ENST00000307078	NM_004655.3	339	cGc/cAc						NEWRECORD																																																																									
PRKAR1A	5573	MSKCC	GRCh37	17	66519919	66519919	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	62	354	1	ENST00000358598.2:c.402G>T	p.Lys134Asn	p.K134N	ENST00000358598	NM_212471.2	134	aaG/aaT						NEWRECORD																																																																									
PRKAR1A	5573	MSKCC	GRCh37	17	66525083	66525083	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	49	303	0	ENST00000358598.2:c.842A>C	p.Lys281Thr	p.K281T	ENST00000358598	NM_212471.2	281	aAg/aCg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604736	48604736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	68	533	2	ENST00000342988.3:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000342988	NM_005359.5	520	Gaa/Taa						NEWRECORD																																																																									
GNA11	2767	MSKCC	GRCh37	19	3114952	3114952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	56	450	0	ENST00000078429.4:c.487G>A	p.Asp163Asn	p.D163N	ENST00000078429	NM_002067.2	163	Gac/Aac						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5215400	5215400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	75	541	0	ENST00000357368.4:c.4218C>A	p.Phe1406Leu	p.F1406L	ENST00000357368	NM_002850.3	1406	ttC/ttA						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7170598	7170598	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750676016		P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	77	545	0	ENST00000302850.5:c.1433G>A	p.Arg478His	p.R478H	ENST00000302850	NM_000208.2	478	cGc/cAc						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10273402	10273402	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	110	555	0	ENST00000340748.4:c.901G>T	p.Glu301Ter	p.E301*	ENST00000340748		301	Gaa/Taa						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10291473	10291473	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61750053		P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	94	583	0	ENST00000340748.4:c.206G>A	p.Arg69His	p.R69H	ENST00000340748		69	cGt/cAt						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15367830	15367830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	63	427	0	ENST00000263377.2:c.1496C>T	p.Ser499Leu	p.S499L	ENST00000263377	NM_058243.2	499	tCg/tTg						NEWRECORD																																																																									
CEBPA	1050	MSKCC	GRCh37	19	33792496	33792496	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	48	336	0	ENST00000498907.2:c.825G>T	p.Lys275Asn	p.K275N	ENST00000498907	NM_004364.3	275	aaG/aaT						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42796237	42796237	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	49	382	1	ENST00000575354.2:c.2887-1G>T		p.X963_splice	ENST00000575354	NM_015125.3	963							NEWRECORD																																																																									
BBC3	27113	MSKCC	GRCh37	19	47735857	47735857	+	start_lost	Translation_Start_Site	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	72	620	1	ENST00000449228.1:c.3G>T	p.Met1?	p.M1?	ENST00000449228	NM_001127240.2	1	atG/atT						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31022481	31022481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	16	193	0	ENST00000375687.4:c.1966G>A	p.Asp656Asn	p.D656N	ENST00000375687	NM_015338.5	656	Gat/Aat						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31389107	31389107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	79	479	1	ENST00000328111.2:c.2020G>A	p.Glu674Lys	p.E674K	ENST00000328111	NM_006892.3	674	Gaa/Aaa						NEWRECORD																																																																									
TOP1	7150	MSKCC	GRCh37	20	39713125	39713125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	38	251	0	ENST00000361337.2:c.531G>T	p.Lys177Asn	p.K177N	ENST00000361337	NM_003286.2	177	aaG/aaT						NEWRECORD																																																																									
TOP1	7150	MSKCC	GRCh37	20	39750375	39750375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	63	397	2	ENST00000361337.2:c.1990G>T	p.Asp664Tyr	p.D664Y	ENST00000361337	NM_003286.2	664	Gac/Tac						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41400138	41400138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	86	394	0	ENST00000373198.4:c.621G>T	p.Gln207His	p.Q207H	ENST00000373198	NM_133170.3	207	caG/caT						NEWRECORD																																																																									
NCOA3	8202	MSKCC	GRCh37	20	46256358	46256358	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1204	129	830	0	ENST00000371998.3:c.586A>C	p.Asn196His	p.N196H	ENST00000371998		196	Aat/Cat						NEWRECORD																																																																									
CRKL	1399	MSKCC	GRCh37	22	21304066	21304066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	99	584	0	ENST00000354336.3:c.845G>A	p.Arg282His	p.R282H	ENST00000354336	NM_005207.3	282	cGc/cAc						NEWRECORD																																																																									
SMARCB1	6598	MSKCC	GRCh37	22	24167550	24167550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	49	340	0	ENST00000263121.7:c.934G>A	p.Ala312Thr	p.A312T	ENST00000263121	NM_003073.3	312	Gca/Aca						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39932139	39932139	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	93	324	0	ENST00000378444.4:c.2460C>A	p.Asn820Lys	p.N820K	ENST00000378444	NM_001123385.1	820	aaC/aaA						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39934037	39934037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	97	328	1	ENST00000378444.4:c.562C>T	p.Arg188Trp	p.R188W	ENST00000378444	NM_001123385.1	188	Cgg/Tgg						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76937409	76937409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	78	272	0	ENST00000373344.5:c.3339G>T	p.Glu1113Asp	p.E1113D	ENST00000373344	NM_000489.3	1113	gaG/gaT						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76938841	76938841	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	79	318	0	ENST00000373344.5:c.1907A>C	p.Asn636Thr	p.N636T	ENST00000373344	NM_000489.3	636	aAt/aCt						NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100611252	100611252	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	55	158	0	ENST00000308731.7:c.1354C>A	p.Leu452Ile	p.L452I	ENST00000308731	NM_000061.2	452	Ctt/Att						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	43	364	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99193597	99193597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	64	156	0	ENST00000074304.5:c.2792G>T	p.Cys931Phe	p.C931F	ENST00000074304	NM_001134224.1	931	tGc/tTc						NEWRECORD																																																																									
CUL3	8452	MSKCC	GRCh37	2	225339002	225339002	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			57	24	499	0	ENST00000264414.4:c.2267G>C	p.Arg756Pro	p.R756P	ENST00000264414	NM_003590.4	756	cGa/cCa						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32169107	32169107	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	101	260	0	ENST00000375023.3:c.3926A>T	p.Asp1309Val	p.D1309V	ENST00000375023	NM_004557.3	1309	gAc/gTc						NEWRECORD																																																																									
GREM1	26585	MSKCC	GRCh37	15	33023005	33023005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	339	604	1	ENST00000300177.4:c.114G>T	p.Lys38Asn	p.K38N	ENST00000300177	NM_001191322.1	38	aaG/aaT						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42041737	42041737	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0010486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	36	774	0	ENST00000219905.7:c.5932A>T	p.Lys1978Ter	p.K1978*	ENST00000219905	NM_001164273.1	1978	Aaa/Taa						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15302975	15302975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	209	187	0	ENST00000263388.2:c.475G>T	p.Val159Leu	p.V159L	ENST00000263388	NM_000435.2	159	Gtg/Ttg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	252	478	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	91	226	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct						NEWRECORD																																																																									
PHOX2B	8929	MSKCC	GRCh37	4	41747850	41747850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	77	469	1	ENST00000226382.2:c.919G>A	p.Ala307Thr	p.A307T	ENST00000226382	NM_003924.3	307	Gcc/Acc						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47677876	47677876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	83	226	0	ENST00000347630.2:c.989C>T	p.Ser330Leu	p.S330L	ENST00000347630	NM_001007230.1	330	tCg/tTg						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212286743	212286743	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	103	387	2	ENST00000342788.4:c.2953C>A	p.Leu985Ile	p.L985I	ENST00000342788	NM_005235.2	985	Cta/Ata						NEWRECORD																																																																									
RYBP	23429	MSKCC	GRCh37	3	72495753	72495753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	85	427	0	ENST00000477973.2:c.317C>T	p.Pro107Ser	p.P107S	ENST00000477973	NM_012234.5	107	Cct/Tct						NEWRECORD																																																																									
FANCC	2176	MSKCC	GRCh37	9	97934374	97934374	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	39	551	0	ENST00000289081.3:c.401T>G	p.Phe134Cys	p.F134C	ENST00000289081	NM_000136.2	134	tTc/tGc						NEWRECORD																																																																									
FGF3	2248	MSKCC	GRCh37	11	69625359	69625359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	53	485	3	ENST00000334134.2:c.434G>A	p.Arg145Gln	p.R145Q	ENST00000334134	NM_005247.2	145	cGg/cAg						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32912816	32912816	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1145	218	1208	2	ENST00000380152.3:c.4324T>A	p.Ser1442Thr	p.S1442T	ENST00000380152		1442	Tca/Aca						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11169468	11169468	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	91	449	1	ENST00000344626.4:c.4538G>T	p.Arg1513Leu	p.R1513L	ENST00000344626	NM_003072.3	1513	cGc/cTc						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15291593	15291593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	54	383	2	ENST00000263388.2:c.3041G>A	p.Arg1014His	p.R1014H	ENST00000263388	NM_000435.2	1014	cGc/cAc						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15375418	15375418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	75	550	0	ENST00000263377.2:c.1009G>A	p.Asp337Asn	p.D337N	ENST00000263377	NM_058243.2	337	Gac/Aac						NEWRECORD																																																																									
PIK3R2	5296	MSKCC	GRCh37	19	18274097	18274097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	15	294	0	ENST00000222254.8:c.1315G>A	p.Val439Met	p.V439M	ENST00000222254	NM_005027.3	439	Gtg/Atg						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37873688	37873716	+	frameshift_variant	Frame_Shift_Del	DEL	ATGAGGAGGGCGCATGCCAGCCTTGCCCC	ATGAGGAGGGCGCATGCCAGCCTTGCCCC	-			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	30	479	0	ENST00000269571.5:c.1855_1883del	p.Glu619GlnfsTer11	p.E619Qfs*11	ENST00000269571		618	gATGAGGAGGGCGCATGCCAGCCTTGCCCC/g						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	53	417	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142176478	142176478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	38	440	0	ENST00000350721.4:c.7623G>T	p.Arg2541Ser	p.R2541S	ENST00000350721	NM_001184.3	2541	agG/agT						NEWRECORD																																																																									
MYOD1	4654	MSKCC	GRCh37	11	17741555	17741555	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	16	154	0	ENST00000250003.3:c.226C>G	p.Arg76Gly	p.R76G	ENST00000250003	NM_002478.4	76	Cgt/Ggt						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99434802	99434802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	30	421	0	ENST00000268035.6:c.889G>C	p.Val297Leu	p.V297L	ENST00000268035	NM_000875.3	297	Gtg/Ctg						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9858507	9858507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	41	581	0	ENST00000330684.3:c.2894C>T	p.Thr965Ile	p.T965I	ENST00000330684	NM_001134407.1	965	aCa/aTa						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59934484	59934484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	73	594	2	ENST00000259008.2:c.314C>T	p.Ser105Leu	p.S105L	ENST00000259008	NM_032043.2	105	tCa/tTa						NEWRECORD																																																																									
CUL3	8452	MSKCC	GRCh37	2	225368419	225368433	+	inframe_deletion	In_Frame_Del	DEL	TTGTGAGAAGTCTCC	TTGTGAGAAGTCTCC	-			P-0014135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	56	445	0	ENST00000264414.4:c.1313_1327del	p.Arg438_Thr442del	p.R438_T442del	ENST00000264414	NM_003590.4	438	aGGAGACTTCTCACAAat/aat						NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100625041	100625041	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	79	615	0	ENST00000308731.7:c.336C>A	p.Tyr112Ter	p.Y112*	ENST00000308731	NM_000061.2	112	taC/taA						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123184073	123184073	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	63	630	0	ENST00000218089.9:c.931G>T	p.Glu311Ter	p.E311*	ENST00000218089	NM_001042749.1	311	Gag/Tag						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55964358	55964358	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	46	845	4	ENST00000263923.4:c.2455C>T	p.Arg819Ter	p.R819*	ENST00000263923	NM_002253.2	819	Cga/Tga						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	255	643	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0011457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	175	261	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	116	443	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106771	27106771	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	106	499	0	ENST00000324856.7:c.6382C>T	p.Gln2128Ter	p.Q2128*	ENST00000324856	NM_006015.4	2128	Cag/Tag						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99182615	99182615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	70	298	0	ENST00000074304.5:c.2418G>T	p.Gln806His	p.Q806H	ENST00000074304	NM_001134224.1	806	caG/caT						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140434523	140434523	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	151	369	1	ENST00000288602.6:c.2175C>A	p.His725Gln	p.H725Q	ENST00000288602	NM_004333.4	725	caC/caA						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55372435	55372435	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	163	580	0	ENST00000297316.4:c.1125G>T	p.Met375Ile	p.M375I	ENST00000297316	NM_022454.3	375	atG/atT						NEWRECORD																																																																									
MALT1	10892	MSKCC	GRCh37	18	56390302	56390302	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1304	186	611	0	ENST00000348428.3:c.1041G>C	p.Leu347Phe	p.L347F	ENST00000348428	NM_006785.3	347	ttG/ttC						NEWRECORD																																																																									
EED	8726	MSKCC	GRCh37	11	85963214	85963214	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	112	290	0	ENST00000263360.6:c.293del	p.Gly98GlufsTer14	p.G98Efs*14	ENST00000263360	NM_003797.3	98	Gga/ga						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1294123	1294123	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	88	489	0	ENST00000310581.5:c.878del	p.Arg293ProfsTer58	p.R293Pfs*58	ENST00000310581	NM_198253.2	293	cGc/cc						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49435199	49435200	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0011457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	72	228	0	ENST00000301067.7:c.6353_6354delinsT	p.Pro2118LeufsTer26	p.P2118Lfs*26	ENST00000301067	NM_003482.3	2118	cCC/cT						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	219	324	0	ENST00000281708.4:c.1436G>C	p.Arg479Pro	p.R479P	ENST00000281708	NM_033632.3	479	cGa/cCa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0011520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	465	506	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0011520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	200	312	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142286929	142286929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	40	477	0	ENST00000350721.4:c.127C>T	p.Arg43Trp	p.R43W	ENST00000350721	NM_001184.3	43	Cgg/Tgg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0011520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	292	461	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
NBN	4683	MSKCC	GRCh37	8	90995084	90995084	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0011520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	482	241	0	ENST00000265433.3:c.38-1G>T		p.X13_splice	ENST00000265433	NM_002485.4	13							NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50444318	50444318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	280	408	2	ENST00000331340.3:c.248G>A	p.Arg83Gln	p.R83Q	ENST00000331340	NM_006060.4	83	cGa/cAa						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63411806	63411806	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	452	768	0	ENST00000330258.3:c.1361delT	p.Leu454Ter	p.L454*	ENST00000330258	NM_152424.3	454	tTg/tg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175788	112175788	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	115	296	0	ENST00000257430.4:c.4497delA	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1499	ggA/gg						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0015017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	253	406	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	163	665	2	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12032451	12032458	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTAGTAT	TTTAGTAT	AAA			P-0015017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	54	354	2	ENST00000353533.5:c.892-5_894delinsAAA		p.X298_splice	ENST00000353533	NM_003010.3	298							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0010648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	112	450	1	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220428	1220428	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	136	699	0	ENST00000326873.7:c.521A>G	p.His174Arg	p.H174R	ENST00000326873	NM_000455.4	174	cAc/cGc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0012428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	482	379	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0012428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	496	377	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579315	7579315	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	295	316	0	ENST00000269305.4:c.372C>A	p.Cys124Ter	p.C124*	ENST00000269305	NM_001126112.2	124	tgC/tgA						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149460359	149460359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	62	442	0	ENST00000286301.3:c.278G>T	p.Gly93Val	p.G93V	ENST00000286301	NM_005211.3	93	gGc/gTc						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116414961	116414961	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	526	408	0	ENST00000397752.3:c.3055G>T	p.Gly1019Cys	p.G1019C	ENST00000397752	NM_000245.2	1019	Ggt/Tgt						NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14022052	14022052	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	107	364	0	ENST00000311895.7:c.752A>T	p.Asp251Val	p.D251V	ENST00000311895	NM_005236.2	251	gAt/gTt						NEWRECORD																																																																									
RAD51C	5889	MSKCC	GRCh37	17	56798136	56798136	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	513	541	0	ENST00000337432.4:c.867G>C	p.Lys289Asn	p.K289N	ENST00000337432	NM_058216.2	289	aaG/aaC						NEWRECORD																																																																									
TCF3	6929	MSKCC	GRCh37	19	1622057	1622057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1253	96	609	1	ENST00000344749.5:c.818G>A	p.Arg273His	p.R273H	ENST00000344749	NM_001136139.2	273	cGt/cAt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0013618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	205	506	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
PIK3R3	8503	MSKCC	GRCh37	1	46509469	46509469	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	27	494	0	ENST00000262741.5:c.1262T>A	p.Leu421Gln	p.L421Q	ENST00000262741	NM_003629.3	421	cTg/cAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578499	7578529	+	frameshift_variant	Frame_Shift_Del	DEL	TGCACAGGGCAGGTCTTGGCCAGTTGGCAAA	TGCACAGGGCAGGTCTTGGCCAGTTGGCAAA	-			P-0013618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	116	617	0	ENST00000269305.4:c.401_431del	p.Phe134CysfsTer26	p.F134Cfs*26	ENST00000269305	NM_001126112.2	134	tTTTGCCAACTGGCCAAGACCTGCCCTGTGCAg/tg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0011463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	129	275	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48584497	48584497	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0011463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	106	257	1	ENST00000342988.3:c.670C>T	p.Gln224Ter	p.Q224*	ENST00000342988	NM_005359.5	224	Cag/Tag						NEWRECORD																																																																									
FUBP1	8880	MSKCC	GRCh37	1	78430004	78430004	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	79	250	0	ENST00000370768.2:c.875G>C	p.Gly292Ala	p.G292A	ENST00000370768	NM_003902.3	292	gGa/gCa						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152201902	152201902	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	159	244	0	ENST00000206249.3:c.756A>T	p.Lys252Asn	p.K252N	ENST00000206249	NM_000125.3	252	aaA/aaT						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23619326	23619326	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	219	417	0	ENST00000261584.4:c.3209T>C	p.Leu1070Pro	p.L1070P	ENST00000261584	NM_024675.3	1070	cTc/cCc						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63409892	63409892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	614	557	1	ENST00000330258.3:c.3275C>T	p.Pro1092Leu	p.P1092L	ENST00000330258	NM_152424.3	1092	cCt/cTt						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53223843	53223843	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	340	656	1	ENST00000375401.3:c.3516del	p.Ser1173ValfsTer91	p.S1173Vfs*91	ENST00000375401	NM_004187.3	1172	ccC/cc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	126	548	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0013226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	92	540	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
AXL	558	MSKCC	GRCh37	19	41743883	41743883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1147	154	995	0	ENST00000301178.4:c.818C>T	p.Ala273Val	p.A273V	ENST00000301178	NM_021913.4	273	gCg/gTg						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243858958	243858958	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1248	125	689	1	ENST00000263826.5:c.107T>C	p.Ile36Thr	p.I36T	ENST00000263826	NM_005465.4	36	aTa/aCa						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48586238	48586238	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0013226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	115	508	0	ENST00000342988.3:c.908del	p.Pro303LeufsTer33	p.P303Lfs*33	ENST00000342988	NM_005359.5	303	Cct/ct						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46245802	46245811	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGTGACTC	ACAGTGACTC	-			P-0013226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1134	124	670	0	ENST00000334344.6:c.3897_3906del	p.Tyr1299Ter	p.Y1299*	ENST00000334344	NM_152641.2	1299	tACAGTGACTCa/ta						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	31	413	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220488	1220488	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	97	422	0	ENST00000326873.7:c.581A>T	p.Asp194Val	p.D194V	ENST00000326873	NM_000455.4	194	gAc/gTc						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88799288	88799288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	57	566	0	ENST00000360948.2:c.97C>A	p.Pro33Thr	p.P33T	ENST00000360948	NM_001012338.2	33	Cct/Act						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41306758	41306758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	22	340	0	ENST00000373198.4:c.901G>A	p.Gly301Arg	p.G301R	ENST00000373198	NM_133170.3	301	Ggg/Agg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0015085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	43	656	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0015085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	161	770	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87563482	87563482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	58	656	1	ENST00000277120.3:c.1870G>A	p.Val624Met	p.V624M	ENST00000277120		624	Gtg/Atg						NEWRECORD																																																																									
PIK3CB	5291	MSKCC	GRCh37	3	138374245	138374245	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	46	616	1	ENST00000289153.2:c.3199G>T	p.Asp1067Tyr	p.D1067Y	ENST00000289153	NM_006219.2	1067	Gac/Tac						NEWRECORD																																																																									
BIRC3	330	MSKCC	GRCh37	11	102195427	102195427	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	56	462	0	ENST00000263464.3:c.187A>G	p.Lys63Glu	p.K63E	ENST00000263464	NM_001165.4	63	Aag/Gag						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	396413	396413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	66	822	1	ENST00000262320.3:c.613G>A	p.Asp205Asn	p.D205N	ENST00000262320	NM_003502.3	205	Gat/Aat						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600369	10600369	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1338	398	923	0	ENST00000171111.5:c.1486G>C	p.Glu496Gln	p.E496Q	ENST00000171111	NM_203500.1	496	Gag/Cag						NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52719825	52719825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	335	899	1	ENST00000322088.6:c.1037C>T	p.Ala346Val	p.A346V	ENST00000322088	NM_014225.5	346	gCc/gTc						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134920412	134920412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	781	515	2	ENST00000398015.3:c.2227C>T	p.Arg743Trp	p.R743W	ENST00000398015	NM_004441.4	743	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0010015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	703	578	1	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	404756	404756	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3130	345	436	0	ENST00000399788.2:c.4438T>G	p.Phe1480Val	p.F1480V	ENST00000399788	NM_001042603.1	1480	Ttc/Gtc						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	347172	347172	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3632	368	619	0	ENST00000262320.3:c.1839G>C	p.Lys613Asn	p.K613N	ENST00000262320	NM_003502.3	613	aaG/aaC						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0015023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	195	1029	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc						NEWRECORD																																																																									
SDHB	6390	MSKCC	GRCh37	1	17380457	17380457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	138	649	0	ENST00000375499.3:c.58G>A	p.Gly20Arg	p.G20R	ENST00000375499	NM_003000.2	20	Gga/Aga						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31019279	31019279	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	40	388	0	ENST00000375687.4:c.874G>C	p.Asp292His	p.D292H	ENST00000375687	NM_015338.5	292	Gac/Cac						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145738699	145738699	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	198	837	1	ENST00000428558.2:c.2365C>G	p.Leu789Val	p.L789V	ENST00000428558	NM_004260.3	789	Ctg/Gtg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	87	332	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	33	182	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023376	27023376	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	40	200	0	ENST00000324856.7:c.482T>C	p.Val161Ala	p.V161A	ENST00000324856	NM_006015.4	161	gTc/gCc						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412023	116412023	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	70	307	0	ENST00000397752.3:c.3008A>G	p.Tyr1003Cys	p.Y1003C	ENST00000397752	NM_000245.2	1003	tAc/tGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0014550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	264	406	3	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46244616	46244616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	262	439	0	ENST00000334344.6:c.2710C>T	p.Gln904Ter	p.Q904*	ENST00000334344	NM_152641.2	904	Cag/Tag						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023858	27023858	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	206	235	0	ENST00000324856.7:c.964G>C	p.Asp322His	p.D322H	ENST00000324856	NM_006015.4	322	Gac/Cac						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114925697	114925697	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	368	420	1	ENST00000543371.1:c.1775A>T	p.Gln592Leu	p.Q592L	ENST00000543371	NM_001198531.1	592	cAg/cTg						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133240981	133240981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	276	372	1	ENST00000320574.5:c.2536G>A	p.Ala846Thr	p.A846T	ENST00000320574	NM_006231.2	846	Gca/Aca						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72831281	72831281	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	175	285	2	ENST00000268489.5:c.5300T>C	p.Ile1767Thr	p.I1767T	ENST00000268489	NM_006885.3	1767	aTc/aCc						NEWRECORD																																																																									
MLH1	4292	MSKCC	GRCh37	3	37050360	37050360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	141	316	0	ENST00000231790.2:c.509G>A	p.Ser170Asn	p.S170N	ENST00000231790	NM_000249.3	170	aGt/aAt						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187557879	187557879	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	288	365	0	ENST00000441802.2:c.3832G>T	p.Asp1278Tyr	p.D1278Y	ENST00000441802	NM_005245.3	1278	Gac/Tac						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	106	231	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0012534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	122	548	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332							NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68855921	68855921	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	162	453	0	ENST00000261769.5:c.1730del	p.Gly577GlufsTer7	p.G577Efs*7	ENST00000261769	NM_004360.3	577	Gga/ga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577543	7577543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	51	495	0	ENST00000269305.4:c.738G>A	p.Met246Ile	p.M246I	ENST00000269305	NM_001126112.2	246	atG/atA						NEWRECORD																																																																									
HNF1A	6927	MSKCC	GRCh37	12	121426701	121426701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	223	650	2	ENST00000257555.6:c.392G>A	p.Arg131Gln	p.R131Q	ENST00000257555		131	cGg/cAg						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134968330	134968330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	46	394	0	ENST00000398015.3:c.2843C>T	p.Ser948Leu	p.S948L	ENST00000398015	NM_004441.4	948	tCa/tTa						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63851728	63851728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	175	507	0	ENST00000279873.7:c.2506C>T	p.His836Tyr	p.H836Y	ENST00000279873	NM_032199.2	836	Cat/Tat						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56434840	56434840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	40	418	1	ENST00000407977.2:c.2297C>T	p.Ser766Leu	p.S766L	ENST00000407977		766	tCg/tTg						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9560967	9560967	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	132	461	0	ENST00000353224.5:c.815A>T	p.Tyr272Phe	p.Y272F	ENST00000353224	NM_177990.2	272	tAc/tTc						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76776294	76776294	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	243	779	0	ENST00000373344.5:c.7172A>G	p.Tyr2391Cys	p.Y2391C	ENST00000373344	NM_000489.3	2391	tAc/tGc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0011090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	169	194	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189582169	189582169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	329	508	0	ENST00000264731.3:c.728G>A	p.Arg243Gln	p.R243Q	ENST00000264731	NM_003722.4	243	cGg/cAg						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56111647	56111647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	220	407	0	ENST00000399503.3:c.247T>A	p.Ser83Thr	p.S83T	ENST00000399503	NM_005921.1	83	Tca/Aca						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8633407	8633407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1091	284	621	2	ENST00000356435.5:c.262C>T	p.Arg88Trp	p.R88W	ENST00000356435		88	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578428	7578627	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAAGCAACTGGAAGACGGCA	GCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAAGCAACTGGAAGACGGCA	-			P-0011090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	111	444	0	ENST00000269305.4:c.376-73_502del		p.X126_splice	ENST00000269305	NM_001126112.2	126							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	436	502	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131939182	131939182	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0014487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	450	436	0	ENST00000265335.6:c.2397+1G>T		p.X799_splice	ENST00000265335		799							NEWRECORD																																																																									
LMO1	4004	MSKCC	GRCh37	11	8251917	8251917	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	212	559	0	ENST00000335790.3:c.160T>C	p.Cys54Arg	p.C54R	ENST00000335790	NM_002315.2	54	Tgt/Cgt						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56495670	56495670	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	43	454	0	ENST00000267101.3:c.3860A>T	p.Gln1287Leu	p.Q1287L	ENST00000267101	NM_001982.3	1287	cAa/cTa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	469	399	0	ENST00000269305.4:c.645T>G	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agG						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180057744	180057744	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138831198		P-0010513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	115	278	0	ENST00000261937.6:c.211G>A	p.Gly71Arg	p.G71R	ENST00000261937	NM_182925.4	71	Gga/Aga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116538	112116538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs749479682		P-0010513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	151	280	0	ENST00000257430.4:c.583C>T	p.Gln195Ter	p.Q195*	ENST00000257430	NM_000038.5	195	Caa/Taa						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142275343	142275343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	160	324	0	ENST00000350721.4:c.1960G>A	p.Ala654Thr	p.A654T	ENST00000350721	NM_001184.3	654	Gca/Aca						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106158460	106158460	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	154	294	0	ENST00000380013.4:c.3361G>T	p.Asp1121Tyr	p.D1121Y	ENST00000380013	NM_001127208.2	1121	Gat/Tat						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152265629	152265629	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	86	134	0	ENST00000206249.3:c.1082C>A	p.Ala361Glu	p.A361E	ENST00000206249	NM_000125.3	361	gCg/gAg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0010592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	154	390	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120464899	120464899	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0010592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	71	269	0	ENST00000256646.2:c.5173A>T	p.Lys1725Ter	p.K1725*	ENST00000256646	NM_024408.3	1725	Aag/Tag						NEWRECORD																																																																									
CDC73	79577	MSKCC	GRCh37	1	193121540	193121540	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	116	437	0	ENST00000367435.3:c.938G>C	p.Gly313Ala	p.G313A	ENST00000367435	NM_024529.4	313	gGa/gCa						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226555255	226555255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	152	537	0	ENST00000366794.5:c.2332C>T	p.Leu778Phe	p.L778F	ENST00000366794	NM_001618.3	778	Ctc/Ttc						NEWRECORD																																																																									
LMO1	4004	MSKCC	GRCh37	11	8248637	8248637	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	47	420	0	ENST00000335790.3:c.250A>G	p.Thr84Ala	p.T84A	ENST00000335790	NM_002315.2	84	Acc/Gcc						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110436806	110436806	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	216	451	0	ENST00000375856.3:c.1595A>G	p.Asp532Gly	p.D532G	ENST00000375856	NM_003749.2	532	gAc/gGc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	76	539	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717661	89717661	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	112	516	0	ENST00000371953.3:c.686C>G	p.Ser229Ter	p.S229*	ENST00000371953	NM_000314.4	229	tCa/tGa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	595	440	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8528633	8528633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	260	698	0	ENST00000356435.5:c.499G>T	p.Asp167Tyr	p.D167Y	ENST00000356435		167	Gac/Tac						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023006	27023006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	37	66	0	ENST00000324856.7:c.112G>A	p.Glu38Lys	p.E38K	ENST00000324856	NM_006015.4	38	Gag/Aag						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162745988	162745988	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	202	528	0	ENST00000367921.3:c.2111T>G	p.Leu704Arg	p.L704R	ENST00000367921	NM_006182.2	704	cTt/cGt						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89259510	89259510	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	222	518	0	ENST00000336596.2:c.654G>T	p.Met218Ile	p.M218I	ENST00000336596	NM_005233.5	218	atG/atT						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55598048	55598048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	99	611	0	ENST00000288135.5:c.2245G>A	p.Glu749Lys	p.E749K	ENST00000288135	NM_000222.2	749	Gaa/Aaa						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30673010	30673010	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	271	743	0	ENST00000376406.3:c.3950C>G	p.Ser1317Cys	p.S1317C	ENST00000376406	NM_014641.2	1317	tCc/tGc						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117706881	117706881	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	241	554	0	ENST00000368508.3:c.2269G>T	p.Gly757Cys	p.G757C	ENST00000368508	NM_002944.2	757	Ggt/Tgt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971024	21971024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	183	410	0	ENST00000304494.5:c.334C>T	p.Arg112Cys	p.R112C	ENST00000304494	NM_000077.4	112	Cgt/Tgt						NEWRECORD																																																																									
PAX5	5079	MSKCC	GRCh37	9	36846911	36846911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	266	614	0	ENST00000358127.4:c.1028G>T	p.Gly343Val	p.G343V	ENST00000358127	NM_001280556.1	343	gGg/gTg						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70406181	70406181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	79	391	0	ENST00000373644.4:c.3695C>T	p.Pro1232Leu	p.P1232L	ENST00000373644	NM_030625.2	1232	cCc/cTc						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70406187	70406187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	83	416	0	ENST00000373644.4:c.3701C>T	p.Thr1234Ile	p.T1234I	ENST00000373644	NM_030625.2	1234	aCa/aTa						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	29002033	29002033	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	76	438	0	ENST00000282397.4:c.1132G>C	p.Glu378Gln	p.E378Q	ENST00000282397	NM_002019.4	378	Gag/Cag						NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14042051	14042051	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	186	558	0	ENST00000311895.7:c.2598G>C	p.Leu866Phe	p.L866F	ENST00000311895	NM_005236.2	866	ttG/ttC						NEWRECORD																																																																									
STAT5B	6777	MSKCC	GRCh37	17	40362473	40362473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1230	409	971	0	ENST00000293328.3:c.1723G>T	p.Asp575Tyr	p.D575Y	ENST00000293328	NM_012448.3	575	Gac/Tac						NEWRECORD																																																																									
CALR	811	MSKCC	GRCh37	19	13049530	13049530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	168	765	1	ENST00000316448.5:c.37G>T	p.Gly13Cys	p.G13C	ENST00000316448	NM_004343.3	13	Ggc/Tgc						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30648409	30648450	+	inframe_deletion	In_Frame_Del	DEL	CTGCACATCGTCCTGTGGACGCGTATCGCCAGCACGATCCCA	CTGCACATCGTCCTGTGGACGCGTATCGCCAGCACGATCCCA	-			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	109	513	0	ENST00000359013.4:c.35_76del	p.Leu12_Pro25del	p.L12_P25del	ENST00000359013	NM_001024847.2	12	CTGCACATCGTCCTGTGGACGCGTATCGCCAGCACGATCCCA/-						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41385240	41385240	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	215	575	0	ENST00000373198.4:c.721del	p.Arg241ValfsTer28	p.R241Vfs*28	ENST00000373198	NM_133170.3	241	Cgt/gt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0010959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	8	430	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt						NEWRECORD																																																																									
RYBP	23429	MSKCC	GRCh37	3	72495659	72495659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	105	345	0	ENST00000477973.2:c.411G>A	p.Gly138Asp	p.G138D	ENST00000477973	NM_012234.5	138	gGc/gAc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952135	178952135	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	78	268	0	ENST00000263967.3:c.3190del	p.Gln1064SerfsTer4	p.Q1064Sfs*4	ENST00000263967	NM_006218.2	1064	Cag/ag						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0012926-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	154	365	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012926-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	226	406	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa						NEWRECORD																																																																									
PIK3R2	5296	MSKCC	GRCh37	19	18271734	18271734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012926-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	84	509	0	ENST00000222254.8:c.421G>A	p.Asp141Asn	p.D141N	ENST00000222254	NM_005027.3	141	Gac/Aac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0013407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	338	380	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0013407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	507	615	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175175	112175175	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	57	182	0	ENST00000257430.4:c.3885del	p.Ala1296GlnfsTer9	p.A1296Qfs*9	ENST00000257430	NM_000038.5	1295	gAa/ga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0013407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	198	518	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70120160	70120160	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	149	173	2	ENST00000245479.2:c.1162G>T	p.Glu388Ter	p.E388*	ENST00000245479	NM_000346.3	388	Gag/Tag						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16242757	16242757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	227	660	2	ENST00000375759.3:c.1378C>T	p.Arg460Cys	p.R460C	ENST00000375759	NM_015001.2	460	Cgc/Tgc						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31022944	31022944	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	99	509	0	ENST00000375687.4:c.2429A>T	p.Asp810Val	p.D810V	ENST00000375687	NM_015338.5	810	gAc/gTc						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0010983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	79	292	0	ENST00000397752.3:c.3028+2T>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010							NEWRECORD																																																																									
STAT5A	6776	MSKCC	GRCh37	17	40458409	40458409	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	30	218	0	ENST00000345506.4:c.1624A>G	p.Ser542Gly	p.S542G	ENST00000345506	NM_003152.3	542	Agc/Ggc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	25	284	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0012380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	88	512	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0012380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	95	492	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153244091	153244091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	97	575	0	ENST00000281708.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000281708	NM_033632.3	689	cGg/cAg						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198267491	198267491	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	67	461	0	ENST00000335508.6:c.1866G>C	p.Glu622Asp	p.E622D	ENST00000335508	NM_012433.2	622	gaG/gaC						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140507763	140507763	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	113	484	0	ENST00000288602.6:c.708C>G	p.Asn236Lys	p.N236K	ENST00000288602	NM_004333.4	236	aaC/aaG						NEWRECORD																																																																									
KLF4	9314	MSKCC	GRCh37	9	110248150	110248150	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	82	473	0	ENST00000374672.4:c.1322A>G	p.Asp441Gly	p.D441G	ENST00000374672	NM_004235.4	441	gAt/gGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0010105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	132	583	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	61	458	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128161	112128161	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	56	468	0	ENST00000257430.4:c.664C>T	p.Gln222Ter	p.Q222*	ENST00000257430	NM_000038.5	222	Cag/Tag						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89349373	89349373	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111737495		P-0010105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1465	227	942	1	ENST00000301030.4:c.3577G>A	p.Ala1193Thr	p.A1193T	ENST00000301030	NM_001256183.1	1193	Gcg/Acg						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30713195	30713195	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	62	295	0	ENST00000359013.4:c.596del	p.Pro199HisfsTer24	p.P199Hfs*24	ENST00000359013	NM_001024847.2	199	Cca/ca						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	149	373	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72993237	72993237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	78	793	2	ENST00000268489.5:c.808G>A	p.Asp270Asn	p.D270N	ENST00000268489	NM_006885.3	270	Gat/Aat						NEWRECORD																																																																									
RPS6KB2	6199	MSKCC	GRCh37	11	67202594	67202594	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0015025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	83	599	0	ENST00000312629.5:c.1403C>G	p.Ser468Ter	p.S468*	ENST00000312629	NM_003952.2	468	tCa/tGa						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108175580	108175580	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	149	280	0	ENST00000278616.4:c.5674+1G>A		p.X1892_splice	ENST00000278616	NM_000051.3	1892							NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15366345	15366345	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	64	461	0	ENST00000263377.2:c.1810G>C	p.Glu604Gln	p.E604Q	ENST00000263377	NM_058243.2	604	Gag/Cag						NEWRECORD																																																																									
MSH2	4436	MSKCC	GRCh37	2	47637260	47637260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	93	430	0	ENST00000233146.2:c.394G>A	p.Glu132Lys	p.E132K	ENST00000233146	NM_000251.2	132	Gaa/Aaa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187629199	187629199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	207	471	0	ENST00000441802.2:c.1783G>A	p.Asp595Asn	p.D595N	ENST00000441802	NM_005245.3	595	Gat/Aat						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38942414	38942414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	56	389	0	ENST00000357387.3:c.5119G>A	p.Glu1707Lys	p.E1707K	ENST00000357387	NM_152756.3	1707	Gaa/Aaa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151946996	151946996	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0015025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	53	485	0	ENST00000262189.6:c.1778C>G	p.Ser593Ter	p.S593*	ENST00000262189	NM_170606.2	593	tCa/tGa						NEWRECORD																																																																									
EGFL7	51162	MSKCC	GRCh37	9	139562813	139562813	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	54	615	0	ENST00000308874.7:c.79G>A	p.Gly27Ser	p.G27S	ENST00000308874		27	Ggc/Agc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	328	453	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0010093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	341	438	0	ENST00000269305.4:c.782+1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261							NEWRECORD																																																																									
GATA1	2623	MSKCC	GRCh37	X	48650816	48650816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	296	831	2	ENST00000376670.3:c.685G>A	p.Gly229Ser	p.G229S	ENST00000376670	NM_002049.3	229	Ggc/Agc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0013628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	537	753	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	664	559	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48878081	48878112	+	frameshift_variant	Frame_Shift_Del	DEL	CACCGCCGCCGCTGCCGCCGCGGAACCCCCGG	CACCGCCGCCGCTGCCGCCGCGGAACCCCCGG	-			P-0013628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	240	154	0	ENST00000267163.4:c.45_76delTGCCGCCGCGGAACCCCCGGCACCGCCGCCGC	p.Ala17ProfsTer3	p.A17Pfs*3	ENST00000267163	NM_000321.2	11	gcCACCGCCGCCGCTGCCGCCGCGGAACCCCCGGca/gcca						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41420067	41420067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	110	538	0	ENST00000373198.4:c.254G>A	p.Gly85Asp	p.G85D	ENST00000373198	NM_133170.3	85	gGc/gAc						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41533694	41533694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	56	691	0	ENST00000263253.7:c.1660G>A	p.Gly554Ser	p.G554S	ENST00000263253	NM_001429.3	554	Ggt/Agt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	131	258	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0014010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	283	433	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114711339	114711339	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	230	539	0	ENST00000543371.1:c.354del	p.Asn118LysfsTer37	p.N118Kfs*37	ENST00000543371	NM_001198531.1	118	aaC/aa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174379	112174379	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	125	319	0	ENST00000257430.4:c.3090del	p.Lys1030AsnfsTer7	p.K1030Nfs*7	ENST00000257430	NM_000038.5	1030	Aaa/aa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175919	112176015	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACT	AAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACT	-			P-0014010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	63	370	0	ENST00000257430.4:c.4629_4725del	p.Glu1544LysfsTer74	p.E1544Kfs*74	ENST00000257430	NM_000038.5	1543	aAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTa/aa						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55371915	55371915	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	27	166	1	ENST00000297316.4:c.605A>G	p.His202Arg	p.H202R	ENST00000297316	NM_022454.3	202	cAc/cGc						NEWRECORD																																																																									
RAD21	5885	MSKCC	GRCh37	8	117864942	117864942	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	70	609	0	ENST00000297338.2:c.1167T>G	p.Phe389Leu	p.F389L	ENST00000297338	NM_006265.2	389	ttT/ttG						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0010656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	206	606	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc						NEWRECORD																																																																									
PIK3R3	8503	MSKCC	GRCh37	1	46511751	46511751	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	54	395	0	ENST00000262741.5:c.1026del	p.Phe342LeufsTer40	p.F342Lfs*40	ENST00000262741	NM_003629.3	342	ttT/tt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	9	341	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108119726	108119726	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	15	335	0	ENST00000278616.4:c.1132del	p.Ser378ValfsTer12	p.S378Vfs*12	ENST00000278616	NM_000051.3	378	Agt/gt						NEWRECORD																																																																									
TEK	7010	MSKCC	GRCh37	9	27158132	27158132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	82	359	0	ENST00000380036.4:c.356G>A	p.Arg119His	p.R119H	ENST00000380036	NM_000459.3	119	cGt/cAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	472	320	0	ENST00000269305.4:c.487T>G	p.Tyr163Asp	p.Y163D	ENST00000269305	NM_001126112.2	163	Tac/Gac						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198266518	198266518	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	45	393	0	ENST00000335508.6:c.2318T>A	p.Leu773His	p.L773H	ENST00000335508	NM_012433.2	773	cTt/cAt						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212495315	212495315	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	133	290	0	ENST00000342788.4:c.1951C>G	p.Pro651Ala	p.P651A	ENST00000342788	NM_005235.2	651	Ccc/Gcc						NEWRECORD																																																																									
MYC	4609	MSKCC	GRCh37	8	128753187	128753193	+	frameshift_variant	Frame_Shift_Del	DEL	CGGAACT	CGGAACT	-			P-0012674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	81	165	0	ENST00000377970.2:c.1349_1355del	p.Arg450LeufsTer7	p.R450Lfs*7	ENST00000377970	NM_002467.4	450	CGGAACTct/ct						NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48023105	48023116	+	inframe_deletion	In_Frame_Del	DEL	AACGTGCAGATG	AACGTGCAGATG	-			P-0012674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	476	579	0	ENST00000234420.5:c.532_543del	p.Arg178_Glu181del	p.R178_E181del	ENST00000234420	NM_000179.2	177	cAACGTGCAGATGaa/caa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579346	7579346	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	456	466	0	ENST00000269305.4:c.341del	p.Leu114CysfsTer9	p.L114Cfs*9	ENST00000269305	NM_001126112.2	114	tTg/tg						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117622211	117622211	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	52	538	0	ENST00000368508.3:c.6659A>T	p.Asn2220Ile	p.N2220I	ENST00000368508	NM_002944.2	2220	aAt/aTt						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55963918	55963918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	1037	488	0	ENST00000263923.4:c.2525G>T	p.Arg842Leu	p.R842L	ENST00000263923	NM_002253.2	842	cGt/cTt						NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056623	26056623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	135	126	0	ENST00000343677.2:c.34G>A	p.Ala12Thr	p.A12T	ENST00000343677	NM_005319.3	12	Gcg/Acg						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32163567	32163567	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	239	368	0	ENST00000375023.3:c.5659G>T	p.Ala1887Ser	p.A1887S	ENST00000375023	NM_004557.3	1887	Gct/Tct						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5126332	5126332	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	23	275	0	ENST00000381652.3:c.3178-1G>T		p.X1060_splice	ENST00000381652	NM_004972.3	1060							NEWRECORD																																																																									
FANCC	2176	MSKCC	GRCh37	9	97888850	97888850	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	157	584	0	ENST00000289081.3:c.857G>T	p.Cys286Phe	p.C286F	ENST00000289081	NM_000136.2	286	tGc/tTc						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63850765	63850765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	88	535	0	ENST00000279873.7:c.1543G>A	p.Glu515Lys	p.E515K	ENST00000279873	NM_032199.2	515	Gag/Aag						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32439135	32439135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	104	523	0	ENST00000332351.3:c.938C>A	p.Ala313Asp	p.A313D	ENST00000332351	NM_024426.4	313	gCc/gAc						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32456858	32456858	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	40	146	0	ENST00000332351.3:c.34C>A	p.Pro12Thr	p.P12T	ENST00000332351	NM_024426.4	12	Ccg/Acg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49435132	49435132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	44	270	0	ENST00000301067.7:c.6421G>T	p.Gly2141Trp	p.G2141W	ENST00000301067	NM_003482.3	2141	Ggg/Tgg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49435962	49435962	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1126	173	569	3	ENST00000301067.7:c.6019G>T	p.Glu2007Ter	p.E2007*	ENST00000301067	NM_003482.3	2007	Gag/Tag						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49436377	49436377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1077	158	560	1	ENST00000301067.7:c.5834C>T	p.Pro1945Leu	p.P1945L	ENST00000301067	NM_003482.3	1945	cCa/cTa						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49444060	49444060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	63	447	0	ENST00000301067.7:c.3311C>T	p.Pro1104Leu	p.P1104L	ENST00000301067	NM_003482.3	1104	cCc/cTc						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110436102	110436102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	64	522	0	ENST00000375856.3:c.2299C>T	p.Leu767Phe	p.L767F	ENST00000375856	NM_003749.2	767	Ctc/Ttc						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	41961468	41961468	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	84	834	0	ENST00000219905.7:c.376G>T	p.Asp126Tyr	p.D126Y	ENST00000219905	NM_001164273.1	126	Gat/Tat						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	41999925	41999925	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	119	545	1	ENST00000219905.7:c.2189-1G>T		p.X730_splice	ENST00000219905	NM_001164273.1	730							NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88669570	88669570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	76	472	0	ENST00000360948.2:c.1328G>T	p.Cys443Phe	p.C443F	ENST00000360948	NM_001012338.2	443	tGt/tTt						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63531743	63531743	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	78	552	0	ENST00000307078.5:c.2237+1G>C		p.X746_splice	ENST00000307078	NM_004655.3	746							NEWRECORD																																																																									
MALT1	10892	MSKCC	GRCh37	18	56376685	56376685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	236	719	0	ENST00000348428.3:c.725G>T	p.Ser242Ile	p.S242I	ENST00000348428	NM_006785.3	242	aGc/aTc						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10597399	10597399	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	181	535	2	ENST00000171111.5:c.1804A>G	p.Ser602Gly	p.S602G	ENST00000171111	NM_203500.1	602	Agt/Ggt						NEWRECORD																																																																									
PIK3R2	5296	MSKCC	GRCh37	19	18272140	18272140	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			28	11	27	0	ENST00000222254.8:c.650A>T	p.His217Leu	p.H217L	ENST00000222254	NM_005027.3	217	cAc/cTc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40944581	40944581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	36	324	0	ENST00000373198.4:c.1921G>A	p.Asp641Asn	p.D641N	ENST00000373198	NM_133170.3	641	Gac/Aac						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70348473	70348473	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	207	338	0	ENST00000374080.3:c.3380C>A	p.Ser1127Ter	p.S1127*	ENST00000374080		1127	tCg/tAg						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76919036	76919036	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	156	202	0	ENST00000373344.5:c.3955C>T	p.Gln1319Ter	p.Q1319*	ENST00000373344	NM_000489.3	1319	Caa/Taa						NEWRECORD																																																																									
SYK	6850	MSKCC	GRCh37	9	93606324	93606324	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	78	498	0	ENST00000375746.1:c.146del	p.Gly49ValfsTer22	p.G49Vfs*22	ENST00000375746	NM_001174167.1	48	ctG/ct						NEWRECORD																																																																									
CRLF2	64109	MSKCC	GRCh37	X	1314978	1314978	+	downstream_gene_variant	3'Flank	DEL	T	T	-			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	237	538	0				ENST00000381566									NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120491182	120491183	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	261	398	0	ENST00000256646.2:c.2606_2607delinsCT	p.Arg869Pro	p.R869P	ENST00000256646	NM_024408.3	869	cGG/cCT						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	347	396	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056628	26056628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	24	166	0	ENST00000343677.2:c.29C>T	p.Ala10Val	p.A10V	ENST00000343677	NM_005319.3	10	gCt/gTt						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3820710	3820710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	224	517	3	ENST00000262367.5:c.2741G>A	p.Ser914Asn	p.S914N	ENST00000262367	NM_004380.2	914	aGc/aAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579494	7579494	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	422	500	0	ENST00000269305.4:c.193A>T	p.Arg65Ter	p.R65*	ENST00000269305	NM_001126112.2	65	Aga/Tga						NEWRECORD																																																																									
ERCC2	2068	MSKCC	GRCh37	19	45855889	45855889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	227	452	5	ENST00000391945.4:c.1921C>T	p.Arg641Trp	p.R641W	ENST00000391945	NM_000400.3	641	Cgg/Tgg						NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48026672	48026672	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	48	294	0	ENST00000234420.5:c.1550T>C	p.Ile517Thr	p.I517T	ENST00000234420	NM_000179.2	517	aTt/aCt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112162933	112162934	+	stop_gained	Nonsense_Mutation	DNP	GT	GT	TG			P-0014133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	151	489	1	ENST00000257430.4:c.1537_1538delinsTG	p.Val513Ter	p.V513*	ENST00000257430	NM_000038.5	513	GTa/TGa						NEWRECORD																																																																									
FGFR1	2260	MSKCC	GRCh37	8	38282117	38282117	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	242	513	0	ENST00000425967.3:c.939C>A	p.Asp313Glu	p.D313E	ENST00000425967	NM_001174067.1	313	gaC/gaA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0014855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	391	662	2	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0014855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	45	178	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55594027	55594027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	149	442	0	ENST00000288135.5:c.1813G>A	p.Glu605Lys	p.E605K	ENST00000288135	NM_000222.2	605	Gag/Aag						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12032603	12032603	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0014855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	302	501	0	ENST00000353533.5:c.1039T>C	p.Cys347Arg	p.C347R	ENST00000353533	NM_003010.3	347	Tgc/Cgc						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145741614	145741614	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	303	724	0	ENST00000428558.2:c.889G>C	p.Asp297His	p.D297H	ENST00000428558	NM_004260.3	297	Gac/Cac						NEWRECORD																																																																									
H3F3A	3020	MSKCC	GRCh37	1	226253427	226253427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	29	29	0	ENST00000366813.1:c.199C>T	p.Pro67Ser	p.P67S	ENST00000366813		67	Ccc/Tcc						NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103510680	103510680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	206	331	0	ENST00000355739.4:c.584G>A	p.Ser195Asn	p.S195N	ENST00000355739	NM_000123.3	195	aGc/aAc						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37618629	37618629	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	637	484	1	ENST00000447079.4:c.305C>A	p.Ser102Ter	p.S102*	ENST00000447079	NM_015083.1	102	tCa/tAa						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37618727	37618727	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	489	442	0	ENST00000447079.4:c.403G>T	p.Glu135Ter	p.E135*	ENST00000447079	NM_015083.1	135	Gaa/Taa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	179	613	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57470704	57470704	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	38	305	0	ENST00000371085.3:c.177G>C	p.Gln59His	p.Q59H	ENST00000371085	NM_000516.4	59	caG/caC						NEWRECORD																																																																									
MLH1	4292	MSKCC	GRCh37	3	37091976	37091976	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0014802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	100	363	0	ENST00000231790.2:c.2104-1G>C		p.X702_splice	ENST00000231790	NM_000249.3	702							NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180057229	180057229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	178	578	0	ENST00000261937.6:c.509G>A	p.Arg170His	p.R170H	ENST00000261937	NM_182925.4	170	cGc/cAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0014259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	496	816	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717615	89717615	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	46	335	0	ENST00000371953.3:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000371953	NM_000314.4	214	Cag/Tag						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198274500	198274500	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	70	405	0	ENST00000335508.6:c.898G>C	p.Glu300Gln	p.E300Q	ENST00000335508	NM_012433.2	300	Gag/Cag						NEWRECORD																																																																									
GSK3B	2932	MSKCC	GRCh37	3	119666144	119666144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	216	421	1	ENST00000316626.5:c.337C>T	p.Arg113Cys	p.R113C	ENST00000316626		113	Cgt/Tgt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112179431	112179431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	196	630	1	ENST00000257430.4:c.8140C>T	p.Arg2714Cys	p.R2714C	ENST00000257430	NM_000038.5	2714	Cgt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0013947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	453	424	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175271	112175272	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0013947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	217	323	2	ENST00000257430.4:c.3982_3983del	p.Gln1328AlafsTer3	p.Q1328Afs*3	ENST00000257430	NM_000038.5	1327	tCA/t						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0012000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	42	239	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108142099	108142099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	146	238	2	ENST00000278616.4:c.3043C>T	p.Gln1015Ter	p.Q1015*	ENST00000278616	NM_000051.3	1015	Caa/Taa						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66218804	66218804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1065	450	328	1	ENST00000273854.3:c.2254G>T	p.Val752Leu	p.V752L	ENST00000273854	NM_004439.5	752	Gtg/Ttg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49420844	49420844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	45	330	0	ENST00000301067.7:c.14905G>A	p.Glu4969Lys	p.E4969K	ENST00000301067	NM_003482.3	4969	Gaa/Aaa						NEWRECORD																																																																									
CRLF2	64109	MSKCC	GRCh37	X	1325335	1325335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	68	286	0	ENST00000381566.1:c.340G>T	p.Val114Phe	p.V114F	ENST00000381566		114	Gtt/Ttt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0013465-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	654	645	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	143	282	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
MRE11A	4361	MSKCC	GRCh37	11	94180406	94180406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	141	303	0	ENST00000323929.3:c.1762G>A	p.Gly588Arg	p.G588R	ENST00000323929	NM_005591.3	588	Gga/Aga						NEWRECORD																																																																									
MRE11A	4361	MSKCC	GRCh37	11	94180411	94180411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	150	317	3	ENST00000323929.3:c.1757C>A	p.Ser586Ter	p.S586*	ENST00000323929	NM_005591.3	586	tCg/tAg						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16075259	16075259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	163	392	0	ENST00000268712.3:c.293C>T	p.Pro98Leu	p.P98L	ENST00000268712	NM_006311.3	98	cCa/cTa						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63410451	63410451	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	175	559	1	ENST00000330258.3:c.2716C>A	p.Leu906Ile	p.L906I	ENST00000330258	NM_152424.3	906	Ctc/Atc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0012515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	257	419	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0012515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	253	505	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88670452	88670452	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143617169		P-0012515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	56	473	1	ENST00000360948.2:c.1234G>A	p.Glu412Lys	p.E412K	ENST00000360948	NM_001012338.2	412	Gaa/Aaa						NEWRECORD																																																																									
RIT1	6016	MSKCC	GRCh37	1	155874541	155874541	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1114	262	538	0	ENST00000368323.3:c.218T>A	p.Ile73Asn	p.I73N	ENST00000368323	NM_006912.5	73	aTt/aAt						NEWRECORD																																																																									
MDM4	4194	MSKCC	GRCh37	1	204518332	204518332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1538	96	619	1	ENST00000367182.3:c.995C>T	p.Ser332Leu	p.S332L	ENST00000367182	NM_001278516.1	332	tCa/tTa						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185161345	185161345	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1174	253	578	0	ENST00000265026.3:c.772G>C	p.Asp258His	p.D258H	ENST00000265026	NM_004721.4	258	Gac/Cac						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187539435	187539435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	66	515	0	ENST00000441802.2:c.8305G>A	p.Glu2769Lys	p.E2769K	ENST00000441802	NM_005245.3	2769	Gag/Aag						NEWRECORD																																																																									
PLK2	10769	MSKCC	GRCh37	5	57752799	57752799	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	60	319	0	ENST00000274289.3:c.1129G>C	p.Asp377His	p.D377H	ENST00000274289	NM_006622.3	377	Gac/Cac						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116339220	116339220	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	81	534	0	ENST00000397752.3:c.82G>C	p.Glu28Gln	p.E28Q	ENST00000397752	NM_000245.2	28	Gag/Cag						NEWRECORD																																																																									
EZH2	2146	MSKCC	GRCh37	7	148525940	148525940	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	152	510	0	ENST00000320356.2:c.517G>C	p.Glu173Gln	p.E173Q	ENST00000320356	NM_004456.4	173	Gag/Cag						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32450124	32450124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	160	499	1	ENST00000332351.3:c.688C>T	p.His230Tyr	p.H230Y	ENST00000332351	NM_024426.4	230	Cac/Tac						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108099946	108099946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	59	212	2	ENST00000278616.4:c.227G>T	p.Arg76Ile	p.R76I	ENST00000278616	NM_000051.3	76	aGa/aTa						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108127029	108127029	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	118	436	0	ENST00000278616.4:c.2212G>C	p.Glu738Gln	p.E738Q	ENST00000278616	NM_000051.3	738	Gag/Cag						NEWRECORD																																																																									
H3F3C	440093	MSKCC	GRCh37	12	31944700	31944700	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			68	11	43	0	ENST00000340398.3:c.401G>C	p.Arg134Thr	p.R134T	ENST00000340398	NM_001013699.2	134	aGa/aCa						NEWRECORD																																																																									
GNA11	2767	MSKCC	GRCh37	19	3094752	3094752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	55	352	0	ENST00000078429.4:c.103G>A	p.Asp35Asn	p.D35N	ENST00000078429	NM_002067.2	35	Gac/Aac						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	215	442	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32163606	32163606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	89	289	1	ENST00000375023.3:c.5620G>A	p.Gly1874Arg	p.G1874R	ENST00000375023	NM_004557.3	1874	Gga/Aga						NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36933506	36933506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	331	862	0	ENST00000361632.4:c.1781G>A	p.Ser594Asn	p.S594N	ENST00000361632		594	aGt/aAt						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67654718	67654718	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0010068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	175	508	0	ENST00000264010.4:c.1205C>T	p.Ser402Leu	p.S402L	ENST00000264010	NM_006565.3	402	tCa/tTa						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12028663	12028663	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	214	545	0	ENST00000353533.5:c.866A>G	p.Asp289Gly	p.D289G	ENST00000353533	NM_003010.3	289	gAt/gGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	331	866	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207120	1207120	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	265	785	1	ENST00000326873.7:c.208G>T	p.Glu70Ter	p.E70*	ENST00000326873	NM_000455.4	70	Gag/Tag						NEWRECORD																																																																									
HIST1H2BD	3017	MSKCC	GRCh37	6	26158510	26158510	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	85	472	0	ENST00000289316.2:c.113A>G	p.Tyr38Cys	p.Y38C	ENST00000289316	NM_138720.2	38	tAt/tGt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600329	10600329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	205	564	0	ENST00000171111.5:c.1526G>T	p.Gly509Val	p.G509V	ENST00000171111	NM_203500.1	509	gGg/gTg						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106593	27106593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	176	619	0	ENST00000324856.7:c.6207delG	p.Gln2070SerfsTer65	p.Q2070Sfs*65	ENST00000324856	NM_006015.4	2068	tcG/tc						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110435541	110435541	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	205	563	0	ENST00000375856.3:c.2860C>A	p.Pro954Thr	p.P954T	ENST00000375856	NM_003749.2	954	Ccg/Acg						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11169512	11169512	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	248	715	0	ENST00000344626.4:c.4582G>T	p.Asp1528Tyr	p.D1528Y	ENST00000344626	NM_003072.3	1528	Gac/Tac						NEWRECORD																																																																									
AXL	558	MSKCC	GRCh37	19	41727835	41727835	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	220	808	0	ENST00000301178.4:c.460A>T	p.Thr154Ser	p.T154S	ENST00000301178	NM_021913.4	154	Acc/Tcc						NEWRECORD																																																																									
DROSHA	29102	MSKCC	GRCh37	5	31526841	31526841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	303	929	0	ENST00000344624.3:c.199C>T	p.Pro67Ser	p.P67S	ENST00000344624		67	Cca/Tca						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41729706	41729706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	131	410	0	ENST00000242208.4:c.823G>A	p.Gly275Ser	p.G275S	ENST00000242208	NM_002192.2	275	Ggt/Agt						NEWRECORD																																																																									
PREX2	80243	MSKCC	GRCh37	8	69046480	69046555	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCACTTTCAGTCACTTCTGTCACCAAACTTGGTAAGGAAATCACATGACTCCCACTGTCTGTGTCAACTGTAACC	TTCACTTTCAGTCACTTCTGTCACCAAACTTGGTAAGGAAATCACATGACTCCCACTGTCTGTGTCAACTGTAACC	-			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	117	499	0	ENST00000288368.4:c.3954_3984+45del		p.X1318_splice	ENST00000288368	NM_024870.2	1318							NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971200	21971200	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	164	381	0	ENST00000304494.5:c.158T>C	p.Met53Thr	p.M53T	ENST00000304494	NM_000077.4	53	aTg/aCg						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70344866	70344866	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	162	604	1	ENST00000374080.3:c.2096C>A	p.Pro699Gln	p.P699Q	ENST00000374080		699	cCa/cAa						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29449925	29449926	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	139	920	0	ENST00000389048.3:c.2929_2930delinsA	p.Gly977ArgfsTer3	p.G977Rfs*3	ENST00000389048	NM_004304.4	977	GGg/Ag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	103	570	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0013824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	68	758	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0013824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	34	441	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120457964	120457964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	40	567	0	ENST00000256646.2:c.7381G>A	p.Glu2461Lys	p.E2461K	ENST00000256646	NM_024408.3	2461	Gag/Aag						NEWRECORD																																																																									
IKBKE	9641	MSKCC	GRCh37	1	206649609	206649609	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	64	469	0	ENST00000367120.3:c.444G>T	p.Glu148Asp	p.E148D	ENST00000367120	NM_014002.3	148	gaG/gaT						NEWRECORD																																																																									
VHL	7428	MSKCC	GRCh37	3	10183619	10183619	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	46	476	2	ENST00000256474.2:c.88G>T	p.Gly30Trp	p.G30W	ENST00000256474	NM_000551.3	30	Ggg/Tgg						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143045854	143045854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	64	606	1	ENST00000262992.4:c.1780G>T	p.Val594Leu	p.V594L	ENST00000262992	NM_001101669.1	594	Gtg/Ttg						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149453057	149453057	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0013490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	35	420	0	ENST00000286301.3:c.890-1G>A		p.X297_splice	ENST00000286301	NM_005211.3	297							NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139409053	139409053	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	50	746	0	ENST00000277541.6:c.2116G>T	p.Glu706Ter	p.E706*	ENST00000277541	NM_017617.3	706	Gag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	66	499	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28959069	28959069	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	88	729	0	ENST00000282397.4:c.2069C>G	p.Pro690Arg	p.P690R	ENST00000282397	NM_002019.4	690	cCt/cGt						NEWRECORD																																																																									
MAX	4149	MSKCC	GRCh37	14	65569036	65569036	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs752477890		P-0013490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	115	618	0	ENST00000358664.4:c.22G>T	p.Glu8Ter	p.E8*	ENST00000358664	NM_002382.4	8	Gag/Tag						NEWRECORD																																																																									
MALT1	10892	MSKCC	GRCh37	18	56363597	56363597	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	25	235	1	ENST00000348428.3:c.377-1G>T		p.X126_splice	ENST00000348428	NM_006785.3	126							NEWRECORD																																																																									
MAPK1	5594	MSKCC	GRCh37	22	22221667	22221667	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	28	201	1	ENST00000215832.6:c.64G>T	p.Gly22Trp	p.G22W	ENST00000215832	NM_002745.4	22	Ggg/Tgg						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0013490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	18	405	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0010566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2880	698	518	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0010566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	2570	398	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0010566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	292	646	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15354097	15354097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	127	207	0	ENST00000263377.2:c.2783T>C	p.Met928Thr	p.M928T	ENST00000263377	NM_058243.2	928	aTg/aCg						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0013963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	149	572	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	129	578	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0013963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	116	447	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	176	741	0	ENST00000361445.4:c.6644C>T	p.Ser2215Phe	p.S2215F	ENST00000361445	NM_004958.3	2215	tCt/tTt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0013963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	77	505	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga						NEWRECORD																																																																									
MYOD1	4654	MSKCC	GRCh37	11	17742931	17742931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	39	362	1	ENST00000250003.3:c.839C>T	p.Pro280Leu	p.P280L	ENST00000250003	NM_002478.4	280	cCg/cTg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175277	112175284	+	frameshift_variant	Frame_Shift_Del	DEL	ACCCTAGA	ACCCTAGA	-			P-0013963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	51	447	0	ENST00000257430.4:c.3989_3996delCTAGAACC	p.Pro1330GlnfsTer9	p.P1330Qfs*9	ENST00000257430	NM_000038.5	1329	cACCCTAGA/c						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508682	106508682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	59	467	0	ENST00000359195.3:c.676C>T	p.Arg226Cys	p.R226C	ENST00000359195	NM_002649.2	226	Cgc/Tgc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0011161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	598	357	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	338	510	0	ENST00000269305.4:c.824G>C	p.Cys275Ser	p.C275S	ENST00000269305	NM_001126112.2	275	tGt/tCt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0013236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	229	299	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67654607	67654607	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	408	627	0	ENST00000264010.4:c.1094A>G	p.Lys365Arg	p.K365R	ENST00000264010	NM_006565.3	365	aAa/aGa						NEWRECORD																																																																									
RARA	5914	MSKCC	GRCh37	17	38506105	38506105	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	272	608	0	ENST00000254066.5:c.397A>G	p.Asn133Asp	p.N133D	ENST00000254066	NM_000964.3	133	Aac/Gac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	538	558	2	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156830856	156830856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	132	517	2	ENST00000524377.1:c.130G>A	p.Gly44Ser	p.G44S	ENST00000524377	NM_002529.3	44	Ggc/Agc						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38966811	38966811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	90	335	0	ENST00000357387.3:c.1231G>A	p.Val411Met	p.V411M	ENST00000357387	NM_152756.3	411	Gtg/Atg						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131973869	131973869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	123	400	0	ENST00000265335.6:c.3572G>A	p.Gly1191Glu	p.G1191E	ENST00000265335		1191	gGa/gAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0010024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	340	451	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152201881	152201881	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	122	407	0	ENST00000206249.3:c.735C>A	p.Cys245Ter	p.C245*	ENST00000206249	NM_000125.3	245	tgC/tgA						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602314	10602314	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1203	324	505	0	ENST00000171111.5:c.1264G>C	p.Asp422His	p.D422H	ENST00000171111	NM_203500.1	422	Gat/Cat						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49434936	49434936	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	190	258	0	ENST00000301067.7:c.6617del	p.Pro2206LeufsTer58	p.P2206Lfs*58	ENST00000301067	NM_003482.3	2206	cCt/ct						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	210	562	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0013317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	114	645	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106482	27106482	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0013317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	112	669	0	ENST00000324856.7:c.6093T>G	p.Tyr2031Ter	p.Y2031*	ENST00000324856	NM_006015.4	2031	taT/taG						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56440713	56440713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	135	795	2	ENST00000407977.2:c.505G>T	p.Ala169Ser	p.A169S	ENST00000407977		169	Gct/Tct						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0014267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	109	550	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	132	813	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg						NEWRECORD																																																																									
MAX	4149	MSKCC	GRCh37	14	65544742	65544742	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	116	520	0	ENST00000358664.4:c.184del	p.Gln62LysfsTer3	p.Q62Kfs*3	ENST00000358664	NM_002382.4	62	Caa/aa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0014471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	234	509	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
HIST3H3	8290	MSKCC	GRCh37	1	228612767	228612767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	59	397	0	ENST00000366696.1:c.260G>A	p.Ser87Asn	p.S87N	ENST00000366696	NM_003493.2	87	aGc/aAc						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29550542	29550542	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	43	368	0	ENST00000358273.4:c.1804del	p.Glu602LysfsTer3	p.E602Kfs*3	ENST00000358273	NM_001042492.2	601	cGg/cg						NEWRECORD																																																																									
STAT5B	6777	MSKCC	GRCh37	17	40370292	40370292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	79	592	1	ENST00000293328.3:c.1046C>T	p.Ala349Val	p.A349V	ENST00000293328	NM_012448.3	349	gCa/gTa						NEWRECORD																																																																									
PDCD1	5133	MSKCC	GRCh37	2	242793306	242793306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	57	676	0	ENST00000334409.5:c.771G>T	p.Met257Ile	p.M257I	ENST00000334409	NM_005018.2	257	atG/atT						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53222764	53222764	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	32	297	0	ENST00000375401.3:c.4172T>G	p.Leu1391Arg	p.L1391R	ENST00000375401	NM_004187.3	1391	cTg/cGg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	15	388	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	40	375	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55146613	55146613	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	58	511	0	ENST00000257290.5:c.2287G>T	p.Asp763Tyr	p.D763Y	ENST00000257290	NM_006206.4	763	Gat/Tat						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149514337	149514337	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	88	617	0	ENST00000261799.4:c.607G>T	p.Ala203Ser	p.A203S	ENST00000261799	NM_002609.3	203	Gcc/Tcc						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149514342	149514342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1137	91	634	1	ENST00000261799.4:c.602C>A	p.Ser201Tyr	p.S201Y	ENST00000261799	NM_002609.3	201	tCt/tAt						NEWRECORD																																																																									
HIST1H3E	8353	MSKCC	GRCh37	6	26225408	26225408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1656	125	833	0	ENST00000360408.1:c.26G>A	p.Arg9His	p.R9H	ENST00000360408	NM_003532.2	9	cGt/cAt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108206590	108206590	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	83	470	0	ENST00000278616.4:c.8170C>A	p.Gln2724Lys	p.Q2724K	ENST00000278616	NM_000051.3	2724	Caa/Aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0010522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	39	478	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0010522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	48	512	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46123826	46123826	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0010522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	36	251	0	ENST00000334344.6:c.93-1G>A		p.X31_splice	ENST00000334344	NM_152641.2	31							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0012985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	415	707	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag						NEWRECORD																																																																									
HIST1H3A	8350	MSKCC	GRCh37	6	26021090	26021090	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs199573090		P-0012985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3354	525	1375	1	ENST00000357647.3:c.373A>T	p.Ile125Phe	p.I125F	ENST00000357647	NM_003529.2	125	Atc/Ttc						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57865125	57865125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1111	357	1217	8	ENST00000228682.2:c.2602C>T	p.Pro868Ser	p.P868S	ENST00000228682	NM_005269.2	868	Cca/Tca						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67589656	67589679	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCCCAGGTGAGTTTTCTATGAAA	ATCCCAGGTGAGTTTTCTATGAAA	-			P-0012985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	62	234	0	ENST00000274335.5:c.1422_1425+20del		p.X474_splice	ENST00000274335		474							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	95	335	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29519863	29519863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	99	471	1	ENST00000389048.3:c.1708G>A	p.Glu570Lys	p.E570K	ENST00000389048	NM_004304.4	570	Gag/Aag						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66242757	66242757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	96	333	0	ENST00000273854.3:c.1815G>T	p.Arg605Ser	p.R605S	ENST00000273854	NM_004439.5	605	agG/agT						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153245494	153245494	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	84	366	1	ENST00000281708.4:c.1697G>T	p.Trp566Leu	p.W566L	ENST00000281708	NM_033632.3	566	tGg/tTg						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145737313	145737313	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1113	77	489	1	ENST00000428558.2:c.3374C>A	p.Pro1125His	p.P1125H	ENST00000428558	NM_004260.3	1125	cCc/cAc						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115112285	115112285	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	27	103	0	ENST00000257566.3:c.1455G>C	p.Gln485His	p.Q485H	ENST00000257566	NM_016569.3	485	caG/caC						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88483888	88483888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	57	469	0	ENST00000360948.2:c.1682G>T	p.Ser561Ile	p.S561I	ENST00000360948	NM_001012338.2	561	aGc/aTc						NEWRECORD																																																																									
GPS2	2874	MSKCC	GRCh37	17	7218284	7218284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	77	390	0	ENST00000380728.2:c.88C>T	p.Arg30Trp	p.R30W	ENST00000380728		30	Cgg/Tgg						NEWRECORD																																																																									
TOP1	7150	MSKCC	GRCh37	20	39745033	39745033	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0012649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	72	364	0	ENST00000361337.2:c.1822+1G>T		p.X608_splice	ENST00000361337	NM_003286.2	608							NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39921424	39921424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	54	494	1	ENST00000378444.4:c.4396C>A	p.Leu1466Ile	p.L1466I	ENST00000378444	NM_001123385.1	1466	Ctt/Att						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40877381	40877381	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	63	357	0	ENST00000373198.4:c.2315del	p.Gly772AlafsTer12	p.G772Afs*12	ENST00000373198	NM_133170.3	772	gGc/gc						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81359014	81359014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	122	811	1	ENST00000222390.5:c.947C>A	p.Thr316Asn	p.T316N	ENST00000222390	NM_000601.4	316	aCt/aAt						NEWRECORD																																																																									
KLF4	9314	MSKCC	GRCh37	9	110249411	110249411	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	212	1115	0	ENST00000374672.4:c.1162T>A	p.Trp388Arg	p.W388R	ENST00000374672	NM_004235.4	388	Tgg/Agg						NEWRECORD																																																																									
FGF19	9965	MSKCC	GRCh37	11	69518463	69518463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	31	248	0	ENST00000294312.3:c.182G>T	p.Arg61Leu	p.R61L	ENST00000294312	NM_005117.2	61	cGc/cTc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	118	497	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9858273	9858273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	99	700	0	ENST00000330684.3:c.3128C>T	p.Thr1043Ile	p.T1043I	ENST00000330684	NM_001134407.1	1043	aCc/aTc						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56435023	56435023	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	96	522	0	ENST00000407977.2:c.2114G>T	p.Gly705Val	p.G705V	ENST00000407977		705	gGc/gTc						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9546539	9546539	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0012879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	178	504	0	ENST00000353224.5:c.1482+1G>T		p.X494_splice	ENST00000353224	NM_177990.2	494							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	96	559	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243828084	243828084	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	90	588	0	ENST00000263826.5:c.274C>A	p.Pro92Thr	p.P92T	ENST00000263826	NM_005465.4	92	Cca/Aca						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29498343	29498343	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	49	624	1	ENST00000389048.3:c.1837G>T	p.Ala613Ser	p.A613S	ENST00000389048	NM_004304.4	613	Gca/Tca						NEWRECORD																																																																									
BCL2L11	10018	MSKCC	GRCh37	2	111881507	111881507	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	91	616	0	ENST00000393256.3:c.185G>T	p.Gly62Val	p.G62V	ENST00000393256	NM_006538.4	62	gGc/gTc						NEWRECORD																																																																									
GATA2	2624	MSKCC	GRCh37	3	128200762	128200762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	89	646	0	ENST00000341105.2:c.1043G>C	p.Cys348Ser	p.C348S	ENST00000341105	NM_032638.4	348	tGt/tCt						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55946296	55946296	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	76	512	0	ENST00000263923.4:c.3883G>T	p.Ala1295Ser	p.A1295S	ENST00000263923	NM_002253.2	1295	Gca/Tca						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106520095	106520095	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	48	413	0	ENST00000359195.3:c.2523C>A	p.Asp841Glu	p.D841E	ENST00000359195	NM_002649.2	841	gaC/gaA						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116411691	116411691	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	83	556	0	ENST00000397752.3:c.2870A>C	p.Lys957Thr	p.K957T	ENST00000397752	NM_000245.2	957	aAg/aCg						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39935765	39935765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1250	128	941	1	ENST00000378444.4:c.107G>T	p.Gly36Val	p.G36V	ENST00000378444	NM_001123385.1	36	gGt/gTt						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140534601	140534601	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	87	630	0	ENST00000288602.6:c.312del	p.Asn105ThrfsTer77	p.N105Tfs*77	ENST00000288602	NM_004333.4	104	ggG/gg						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47039857	47039860	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0013376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	89	715	0	ENST00000329236.7:c.966_969del	p.Ser323TrpfsTer83	p.S323Wfs*83	ENST00000329236	NM_001204466.1	322	gcCTCT/gc						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11097092	11097092	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	111	709	0	ENST00000344626.4:c.586del	p.Leu196SerfsTer107	p.L196Sfs*107	ENST00000344626	NM_003072.3	195	Ccc/cc						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72992630	72992630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	11	549	2	ENST00000268489.5:c.1415C>A	p.Ala472Glu	p.A472E	ENST00000268489	NM_006885.3	472	gCg/gAg						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27105788	27105788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			68	12	498	0	ENST00000324856.7:c.5399A>G	p.Asn1800Ser	p.N1800S	ENST00000324856	NM_006015.4	1800	aAt/aGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	434	501	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc						NEWRECORD																																																																									
MST1R	4486	MSKCC	GRCh37	3	49928628	49928628	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0012593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	439	558	0	ENST00000296474.3:c.3644+2T>C		p.X1215_splice	ENST00000296474	NM_002447.2	1215							NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134670754	134670754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1075	125	336	0	ENST00000398015.3:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000398015	NM_004441.4	222	cGg/cAg						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143159063	143159063	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	192	461	0	ENST00000262992.4:c.790A>T	p.Ile264Phe	p.I264F	ENST00000262992	NM_001101669.1	264	Att/Ttt						NEWRECORD																																																																									
CDK6	1021	MSKCC	GRCh37	7	92355058	92355058	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1076	198	385	0	ENST00000265734.4:c.419G>T	p.Arg140Leu	p.R140L	ENST00000265734	NM_001259.6	140	cGa/cTa						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133201350	133201350	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1296	161	614	0	ENST00000320574.5:c.6794A>G	p.Tyr2265Cys	p.Y2265C	ENST00000320574	NM_006231.2	2265	tAc/tGc						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31383274	31383274	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138171867		P-0012593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1597	864	669	0	ENST00000328111.2:c.1186C>T	p.Pro396Ser	p.P396S	ENST00000328111	NM_006892.3	396	Ccc/Tcc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221987	1221987	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	452	595	0	ENST00000326873.7:c.903del	p.Gln302ArgfsTer34	p.Q302Rfs*34	ENST00000326873	NM_000455.4	301	cGg/cg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			337	412	397	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			501	405	559	0	ENST00000269305.4:c.672G>T	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaT						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023412	27023412	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			640	149	434	0	ENST00000324856.7:c.518A>G	p.His173Arg	p.H173R	ENST00000324856	NM_006015.4	173	cAt/cGt						NEWRECORD																																																																									
CUL3	8452	MSKCC	GRCh37	2	225346654	225346654	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			789	147	422	0	ENST00000264414.4:c.1984A>T	p.Asn662Tyr	p.N662Y	ENST00000264414	NM_003590.4	662	Aat/Tat						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134851589	134851589	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			525	117	378	0	ENST00000398015.3:c.995T>A	p.Ile332Asn	p.I332N	ENST00000398015	NM_004441.4	332	aTc/aAc						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131972827	131972827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			442	101	320	0	ENST00000265335.6:c.3410G>T	p.Ser1137Ile	p.S1137I	ENST00000265335		1137	aGt/aTt						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152129120	152129120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			766	435	605	0	ENST00000206249.3:c.73C>A	p.Pro25Thr	p.P25T	ENST00000206249	NM_000125.3	25	Ccc/Acc						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106509516	106509516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1280	118	357	0	ENST00000359195.3:c.1510T>C	p.Ser504Pro	p.S504P	ENST00000359195	NM_002649.2	504	Tct/Cct						NEWRECORD																																																																									
FANCC	2176	MSKCC	GRCh37	9	98011476	98011476	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			837	265	479	2	ENST00000289081.3:c.98A>T	p.Asp33Val	p.D33V	ENST00000289081	NM_000136.2	33	gAc/gTc						NEWRECORD																																																																									
YAP1	10413	MSKCC	GRCh37	11	102100590	102100590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			685	136	394	1	ENST00000282441.5:c.1434G>T	p.Leu478Phe	p.L478F	ENST00000282441	NM_001130145.2	478	ttG/ttT						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118375583	118375583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			575	88	326	0	ENST00000534358.1:c.8976G>A	p.Met2992Ile	p.M2992I	ENST00000534358	NM_005933.3	2992	atG/atA						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57864739	57864739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			567	1789	806	1	ENST00000228682.2:c.2216C>A	p.Ala739Glu	p.A739E	ENST00000228682	NM_005269.2	739	gCa/gAa						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133257200	133257200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			629	149	482	1	ENST00000320574.5:c.278G>A	p.Arg93Lys	p.R93K	ENST00000320574	NM_006231.2	93	aGa/aAa						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88678550	88678550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			299	89	303	0	ENST00000360948.2:c.986C>T	p.Pro329Leu	p.P329L	ENST00000360948	NM_001012338.2	329	cCc/cTc						NEWRECORD																																																																									
ICOSLG	23308	MSKCC	GRCh37	21	45656765	45656765	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			281	84	301	1	ENST00000407780.3:c.391A>T	p.Thr131Ser	p.T131S	ENST00000407780	NM_001283052.1	131	Aca/Tca						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118343517	118343517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			720	116	321	0	ENST00000534358.1:c.1643C>T	p.Thr548Ile	p.T548I	ENST00000534358	NM_005933.3	548	aCt/aTt						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100912788	100912788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1216	215	721	1	ENST00000325455.5:c.2534G>T	p.Arg845Met	p.R845M	ENST00000325455	NM_001202474.3	845	aGg/aTg						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29552261	29552261	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145891889		P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			492	126	387	0	ENST00000358273.4:c.1994C>T	p.Ser665Phe	p.S665F	ENST00000358273	NM_001042492.2	665	tCc/tTc						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66356138	66356150	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTGGGCTCAAG	TCCTGGGCTCAAG	-			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			836	54	368	0	ENST00000273854.3:c.1347_1359del	p.Asp449GlufsTer8	p.D449Efs*8	ENST00000273854	NM_004439.5	449	gaCTTGAGCCCAGGA/ga						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50468071	50468071	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	282	264	0	ENST00000331340.3:c.1306G>A	p.Asp436Asn	p.D436N	ENST00000331340	NM_006060.4	436	Gac/Aac						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87322773	87322773	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	359	272	0	ENST00000277120.3:c.374A>G	p.Asn125Ser	p.N125S	ENST00000277120		125	aAc/aGc						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2135301	2135301	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	516	368	0	ENST00000219476.3:c.4640T>A	p.Val1547Asp	p.V1547D	ENST00000219476	NM_000548.3	1547	gTc/gAc						NEWRECORD																																																																									
PRKAR1A	5573	MSKCC	GRCh37	17	66511686	66511708	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTCAGGGAATACTTTGAGAGG	TCCTCAGGGAATACTTTGAGAGG	-			P-0011405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	186	269	0	ENST00000358598.2:c.147_169del	p.Leu50GlyfsTer24	p.L50Gfs*24	ENST00000358598	NM_212471.2	49	tTCCTCAGGGAATACTTTGAGAGG/t						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0014365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	16	550	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0011039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	289	301	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0011039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	282	346	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	367	390	0	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt						NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35876098	35876098	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	195	383	0	ENST00000303115.3:c.890G>C	p.Ser297Thr	p.S297T	ENST00000303115	NM_002185.3	297	aGt/aCt						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56189377	56189377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1131	88	399	0	ENST00000399503.3:c.4409C>T	p.Ala1470Val	p.A1470V	ENST00000399503	NM_005921.1	1470	gCt/gTt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175752	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	TTTATTACAT	TTTATTACAT	-			P-0011039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	189	296	0	ENST00000257430.4:c.4464_4473del	p.Leu1489ProfsTer15	p.L1489Pfs*15	ENST00000257430	NM_000038.5	1487	acTTTATTACAT/ac						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49420968	49421397	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTGGCAGGAGAAGGTGCCAAGGGGGAAGGGGGCGGGGAGGGTTCTTCAGGAGGTGGGGCCGAGAGCTGTCGCACATCCAGATTGGAGACATTGTAGGTATAGCTGTGCTGAGTGGGTGGCTCTGGGGCGGGGCTCTCCTGTAGGAGGGTGCCCTGTATCATTAGTGCCAGCTCCTCATCTAACTAGCTCCCTCCTTCCCCTCACCCATATGCCACCCTCCCAAAAGGCCTCCACATTCTTTGCCCTAGACAGCCTCTTTTTTCTTTTCTTTTCTTTTTTTTTTGAGACACAGTCTTGCTCTGTTGCCCAGGCTGGATCCAGTGGCACAATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGGGATTCTCATGCCTCAGCCTTTCGAGTAGCTGGGATTACAGGCACGCACCATCACGCCTGGCT	ACTGGCAGGAGAAGGTGCCAAGGGGGAAGGGGGCGGGGAGGGTTCTTCAGGAGGTGGGGCCGAGAGCTGTCGCACATCCAGATTGGAGACATTGTAGGTATAGCTGTGCTGAGTGGGTGGCTCTGGGGCGGGGCTCTCCTGTAGGAGGGTGCCCTGTATCATTAGTGCCAGCTCCTCATCTAACTAGCTCCCTCCTTCCCCTCACCCATATGCCACCCTCCCAAAAGGCCTCCACATTCTTTGCCCTAGACAGCCTCTTTTTTCTTTTCTTTTCTTTTTTTTTTGAGACACAGTCTTGCTCTGTTGCCCAGGCTGGATCCAGTGGCACAATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGGGATTCTCATGCCTCAGCCTTTCGAGTAGCTGGGATTACAGGCACGCACCATCACGCCTGGCT	-			P-0010315-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			658	82	595	0	ENST00000301067.7:c.14643+189_14781del		p.X4881_splice	ENST00000301067	NM_003482.3	4881							NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38060846	38060864	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGCCAAGCCGTGTGCC	GGGTGCCAAGCCGTGTGCC	-			P-0010315-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			844	147	808	1	ENST00000250448.2:c.1125_1143del	p.Ala376ThrfsTer7	p.A376Tfs*7	ENST00000250448	NM_004496.3	375	ccGGCACACGGCTTGGCACCC/cc						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117711004	117711004	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010315-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			321	31	202	0	ENST00000368508.3:c.1268T>C	p.Val423Ala	p.V423A	ENST00000368508	NM_002944.2	423	gTc/gCc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	33	430	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0014150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	28	392	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0010247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	97	533	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0010247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	133	451	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0011413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	98	416	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa						NEWRECORD																																																																									
STAT5A	6776	MSKCC	GRCh37	17	40444033	40444033	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202112433		P-0011413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1484	101	1004	0	ENST00000345506.4:c.329G>A	p.Arg110Gln	p.R110Q	ENST00000345506	NM_003152.3	110	cGg/cAg						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29443618	29443618	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200585833		P-0014888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	152	647	3	ENST00000389048.3:c.3599C>T	p.Ala1200Val	p.A1200V	ENST00000389048	NM_004304.4	1200	gCg/gTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578193	7578193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	259	1010	2	ENST00000269305.4:c.656C>T	p.Pro219Leu	p.P219L	ENST00000269305	NM_001126112.2	219	cCc/cTc						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89685287	89685287	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	164	218	0	ENST00000371953.3:c.182del	p.His61LeufsTer38	p.H61Lfs*38	ENST00000371953	NM_000314.4	61	cAt/ct						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578215	7578215	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	267	951	0	ENST00000269305.4:c.634T>G	p.Phe212Val	p.F212V	ENST00000269305	NM_001126112.2	212	Ttt/Gtt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0011038-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	963	453	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578490	7578490	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011038-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	345	451	0	ENST00000269305.4:c.440T>G	p.Val147Gly	p.V147G	ENST00000269305	NM_001126112.2	147	gTt/gGt						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38950442	38950442	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011038-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1836	143	384	0	ENST00000357387.3:c.3508G>C	p.Glu1170Gln	p.E1170Q	ENST00000357387	NM_152756.3	1170	Gaa/Caa						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44941882	44941882	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	338	377	0	ENST00000377967.4:c.3206A>G	p.Asp1069Gly	p.D1069G	ENST00000377967	NM_021140.2	1069	gAt/gGt						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134670327	134670327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	363	232	0	ENST00000398015.3:c.238C>T	p.Arg80Trp	p.R80W	ENST00000398015	NM_004441.4	80	Cgg/Tgg						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65325851	65325851	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	227	260	0	ENST00000342505.4:c.1271G>T	p.Cys424Phe	p.C424F	ENST00000342505	NM_002227.2	424	tGc/tTc						NEWRECORD																																																																									
FH	2271	MSKCC	GRCh37	1	241671997	241671997	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	157	293	0	ENST00000366560.3:c.644A>G	p.His215Arg	p.H215R	ENST00000366560	NM_000143.3	215	cAt/cGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577504	7577507	+	protein_altering_variant	In_Frame_Del	DEL	GTCT	GTCT	C			P-0010272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	199	314	0	ENST00000269305.4:c.774_777delinsG	p.Asp259del	p.D259del	ENST00000269305	NM_001126112.2	258	gaAGAC/gaG						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0013751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	128	560	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0013751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	61	321	0	ENST00000412916.2:c.165+1G>C		p.X55_splice	ENST00000412916		55							NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0013751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	26	855	4	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68835717	68835717	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	53	921	0	ENST00000261769.5:c.310del	p.Asp104ThrfsTer13	p.D104Tfs*13	ENST00000261769	NM_004360.3	103	tGg/tg						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68853280	68853281	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0013751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	121	791	0	ENST00000261769.5:c.1664_1665del	p.His555ArgfsTer32	p.H555Rfs*32	ENST00000261769	NM_004360.3	555	CAc/c						NEWRECORD																																																																									
CUL3	8452	MSKCC	GRCh37	2	225346776	225346776	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	309	383	0	ENST00000264414.4:c.1862A>G	p.Asp621Gly	p.D621G	ENST00000264414	NM_003590.4	621	gAt/gGt						NEWRECORD																																																																									
NKX3-1	4824	MSKCC	GRCh37	8	23538792	23538792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	289	304	0	ENST00000380871.4:c.647G>A	p.Ser216Asn	p.S216N	ENST00000380871	NM_006167.3	216	aGc/aAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	301	689	1	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0011455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	93	385	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17955109	17955109	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140784576		P-0011455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	173	528	0	ENST00000458235.1:c.118C>T	p.Arg40Cys	p.R40C	ENST00000458235	NM_000215.3	40	Cgc/Tgc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591915	48591915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	86	558	0	ENST00000342988.3:c.1078G>T	p.Asp360Tyr	p.D360Y	ENST00000342988	NM_005359.5	360	Gat/Tat						NEWRECORD																																																																									
CRLF2	64109	MSKCC	GRCh37	X	1325359	1325359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1177	107	529	2	ENST00000381566.1:c.316G>A	p.Val106Ile	p.V106I	ENST00000381566		106	Gtt/Att						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	11998926	11998927	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	T			P-0011455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	44	458	0	ENST00000353533.5:c.428_429delinsT	p.Lys143IlefsTer9	p.K143Ifs*9	ENST00000353533	NM_003010.3	143	aAA/aT						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246550	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	TC	TC	CT			P-0014125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	138	429	1	ENST00000349310.3:c.49_50delinsAG	p.Glu17Arg	p.E17R	ENST00000349310	NM_001014432.1	17	GAg/AGg						NEWRECORD																																																																									
IDH2	3418	MSKCC	GRCh37	15	90634871	90634871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	65	521	0	ENST00000330062.3:c.121G>A	p.Asp41Asn	p.D41N	ENST00000330062	NM_002168.2	41	Gac/Aac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577916	7578268	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCCAGCCAAGCAGGGGAGGCCCTTAGCCTCTGTAAGCTTCAGTTTTTTCAACTGTGCAATAGTTAAACCCATTTACTTTGCACATCTCATGGGGTTATAGGGAGGTCAAATAAGCAGCAGGAGAAAGCCCCCCTACTGCTCACCTGGAGGGCCACTGACAACCACCCTTAACCCCTCCTCCCAGAGACCCCAGTTGCAAACCAGACCTCAGGCGGCTCATAGGGCACCACCACACTATGTCGAAAAGTGTTTCTGTCATCCAAATACTCCACACGCAAATTTCCTTCCACTCGGATAA	GATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCCAGCCAAGCAGGGGAGGCCCTTAGCCTCTGTAAGCTTCAGTTTTTTCAACTGTGCAATAGTTAAACCCATTTACTTTGCACATCTCATGGGGTTATAGGGAGGTCAAATAAGCAGCAGGAGAAAGCCCCCCTACTGCTCACCTGGAGGGCCACTGACAACCACCCTTAACCCCTCCTCCCAGAGACCCCAGTTGCAAACCAGACCTCAGGCGGCTCATAGGGCACCACCACACTATGTCGAAAAGTGTTTCTGTCATCCAAATACTCCACACGCAAATTTCCTTCCACTCGGATAA	-			P-0014125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			5	15	15	0	ENST00000269305.4:c.581_672+261del		p.X194_splice	ENST00000269305	NM_001126112.2	194							NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12011144	12011144	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	82	439	0	ENST00000353533.5:c.551C>A	p.Ser184Ter	p.S184*	ENST00000353533	NM_003010.3	184	tCg/tAg						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29592359	29592359	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0014125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	95	442	0	ENST00000358273.4:c.4835+2T>G		p.X1612_splice	ENST00000358273	NM_001042492.2	1612							NEWRECORD																																																																									
ACVR1	90	MSKCC	GRCh37	2	158655953	158655953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	161	948	0	ENST00000263640.3:c.53C>T	p.Ser18Phe	p.S18F	ENST00000263640	NM_001105.4	18	tCc/tTc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151845430	151845430	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	136	561	1	ENST00000262189.6:c.13582C>T	p.Gln4528Ter	p.Q4528*	ENST00000262189	NM_170606.2	4528	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	532	432	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	262	379	1	ENST00000288602.6:c.1397G>A	p.Gly466Glu	p.G466E	ENST00000288602	NM_004333.4	466	gGa/gAa						NEWRECORD																																																																									
ID3	3399	MSKCC	GRCh37	1	23885835	23885835	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1258	76	608	0	ENST00000374561.5:c.83G>C	p.Arg28Pro	p.R28P	ENST00000374561	NM_002167.4	28	cGa/cCa						NEWRECORD																																																																									
MPL	4352	MSKCC	GRCh37	1	43803845	43803845	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	291	417	0	ENST00000372470.3:c.155G>A	p.Trp52Ter	p.W52*	ENST00000372470	NM_005373.2	52	tGg/tAg						NEWRECORD																																																																									
MPL	4352	MSKCC	GRCh37	1	43812595	43812595	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	313	309	0	ENST00000372470.3:c.1298A>G	p.Gln433Arg	p.Q433R	ENST00000372470	NM_005373.2	433	cAg/cGg						NEWRECORD																																																																									
JUN	3725	MSKCC	GRCh37	1	59248520	59248520	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	107	468	0	ENST00000371222.2:c.223G>T	p.Glu75Ter	p.E75*	ENST00000371222	NM_002228.3	75	Gag/Tag						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156849849	156849849	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200022271		P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	448	376	0	ENST00000524377.1:c.2105G>T	p.Arg702Leu	p.R702L	ENST00000524377	NM_002529.3	702	cGt/cTt						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212587160	212587160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	471	483	0	ENST00000342788.4:c.841G>T	p.Ala281Ser	p.A281S	ENST00000342788	NM_005235.2	281	Gca/Tca						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149434875	149434875	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	186	422	0	ENST00000286301.3:c.2579T>C	p.Leu860Pro	p.L860P	ENST00000286301	NM_005211.3	860	cTg/cCg						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	93965568	93965568	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	361	617	0	ENST00000369303.4:c.2360C>A	p.Pro787Gln	p.P787Q	ENST00000369303	NM_004440.3	787	cCa/cAa						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50450295	50450295	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	85	274	0	ENST00000331340.3:c.479T>G	p.Leu160Arg	p.L160R	ENST00000331340	NM_006060.4	160	cTg/cGg						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106509753	106509753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	203	328	0	ENST00000359195.3:c.1747C>T	p.Leu583Phe	p.L583F	ENST00000359195	NM_002649.2	583	Ctt/Ttt						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116436041	116436041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	313	488	0	ENST00000397752.3:c.4036G>T	p.Gly1346Trp	p.G1346W	ENST00000397752	NM_000245.2	1346	Ggg/Tgg						NEWRECORD																																																																									
MYOD1	4654	MSKCC	GRCh37	11	17741594	17741594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	82	74	0	ENST00000250003.3:c.265C>A	p.Gln89Lys	p.Q89K	ENST00000250003	NM_002478.4	89	Cag/Aag						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118343710	118343710	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	237	275	0	ENST00000534358.1:c.1836G>C	p.Leu612Phe	p.L612F	ENST00000534358	NM_005933.3	612	ttG/ttC						NEWRECORD																																																																									
CBL	867	MSKCC	GRCh37	11	119146772	119146772	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	385	466	0	ENST00000264033.4:c.935G>T	p.Gly312Val	p.G312V	ENST00000264033	NM_005188.3	312	gGg/gTg						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91354561	91354561	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	403	390	0	ENST00000355112.3:c.4001G>T	p.Arg1334Met	p.R1334M	ENST00000355112	NM_000057.2	1334	aGg/aTg						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23641698	23641698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	152	411	0	ENST00000261584.4:c.1777C>T	p.His593Tyr	p.H593Y	ENST00000261584	NM_024675.3	593	Cat/Tat						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023935	27023935	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			39	13	20	0	ENST00000324856.7:c.1042del	p.Ala348ProfsTer15	p.A348Pfs*15	ENST00000324856	NM_006015.4	347	gcG/gc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220627	1220646	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCCCGGCTTTCCAGCCGC	CTCCCCGGCTTTCCAGCCGC	-			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	310	388	0	ENST00000326873.7:c.646_665del	p.Ser216ArgfsTer43	p.S216Rfs*43	ENST00000326873	NM_000455.4	215	ggCTCCCCGGCTTTCCAGCCGCcc/ggcc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0011063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	80	329	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56161270	56161270	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	87	338	0	ENST00000399503.3:c.1139T>C	p.Leu380Ser	p.L380S	ENST00000399503	NM_005921.1	380	tTa/tCa						NEWRECORD																																																																									
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0011063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	71	243	0	ENST00000412916.2:c.165+1G>T		p.X55_splice	ENST00000412916		55							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	59	342	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	73	341	0	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142285010	142285010	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	87	441	0	ENST00000350721.4:c.245T>C	p.Met82Thr	p.M82T	ENST00000350721	NM_001184.3	82	aTg/aCg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174430	112174430	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	61	216	0	ENST00000257430.4:c.3139G>T	p.Glu1047Ter	p.E1047*	ENST00000257430	NM_000038.5	1047	Gaa/Taa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175535	112175542	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGCATT	GTGGCATT	-			P-0011144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	40	334	0	ENST00000257430.4:c.4244_4251del	p.Ser1415AsnfsTer5	p.S1415Nfs*5	ENST00000257430	NM_000038.5	1415	aGTGGCATT/a						NEWRECORD																																																																									
HLA-A	3105	MSKCC	GRCh37	6	29910549	29910549	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45585732		P-0012507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	18	72	0	ENST00000376809.5:c.89G>A	p.Arg30Lys	p.R30K	ENST00000376809	NM_002116.7	30	aGg/aAg						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508365	106508365	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	21	170	0	ENST00000359195.3:c.359A>G	p.Asp120Gly	p.D120G	ENST00000359195	NM_002649.2	120	gAc/gGc						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49420237	49420237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			938	112	574	1	ENST00000301067.7:c.15512G>A	p.Arg5171Gln	p.R5171Q	ENST00000301067	NM_003482.3	5171	cGg/cAg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108141613	108142080	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGTTTCACCATATTGGCCAGGCTGTTCTCAAACTCCTGACCTTGTGATCTGCCTGCTTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCACCCGGCCTATGTTTATATACTTTTTAAAGTAAATGATTTGTGGATAAACCTGATTTTTTTCCCTCCTACCATCTTAGTATCTAATGCTTTTAAAGGAGCTTCCTGGAGAAGAGTACCCCTTGCCAATGGAAGATGTTCTTGAACTTCTGAAACCACTATCGTAAGAAATTAAAACCTTATGTTATGTTCACTTTAAAGTTATAAAATAACTGATGTGTTCTGTTAAGCTTATAAAGTTGAACTTTTTTTTTTTTTTTACCACAGCAATGTGTGTTCTTTGTATCGTCGTGACCAAGATGTTTGTAAAACTATTTTAAACCATGTCCTTCATGTAGTGAAAAACCTAGGTCAAAGCAATATGGACTCT	GAGTTTCACCATATTGGCCAGGCTGTTCTCAAACTCCTGACCTTGTGATCTGCCTGCTTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCACCCGGCCTATGTTTATATACTTTTTAAAGTAAATGATTTGTGGATAAACCTGATTTTTTTCCCTCCTACCATCTTAGTATCTAATGCTTTTAAAGGAGCTTCCTGGAGAAGAGTACCCCTTGCCAATGGAAGATGTTCTTGAACTTCTGAAACCACTATCGTAAGAAATTAAAACCTTATGTTATGTTCACTTTAAAGTTATAAAATAACTGATGTGTTCTGTTAAGCTTATAAAGTTGAACTTTTTTTTTTTTTTTACCACAGCAATGTGTGTTCTTTGTATCGTCGTGACCAAGATGTTTGTAAAACTATTTTAAACCATGTCCTTCATGTAGTGAAAAACCTAGGTCAAAGCAATATGGACTCT	-			P-0012507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	25	410	0	ENST00000278616.4:c.2839-175_3027del		p.X947_splice	ENST00000278616	NM_000051.3	947							NEWRECORD																																																																									
TNFAIP3	7128	MSKCC	GRCh37	6	138196006	138196006	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	41	290	0	ENST00000237289.4:c.321del	p.Thr108LeufsTer15	p.T108Lfs*15	ENST00000237289	NM_001270507.1	107	gCc/gc						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63661977	63661977	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	38	464	0	ENST00000279873.7:c.82del	p.His28ThrfsTer17	p.H28Tfs*17	ENST00000279873	NM_032199.2	27	ttC/tt						NEWRECORD																																																																									
RPS6KA4	8986	MSKCC	GRCh37	11	64138773	64138773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	104	1086	3	ENST00000334205.4:c.2140C>T	p.Arg714Trp	p.R714W	ENST00000334205	NM_003942.2	714	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578221	7578236	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTGTCATCCAAATA	TTCTGTCATCCAAATA	-			P-0015008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	99	986	1	ENST00000269305.4:c.613_628del	p.Tyr205ThrfsTer37	p.Y205Tfs*37	ENST00000269305	NM_001126112.2	205	TATTTGGATGACAGAAac/ac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	246	778	1	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41274911	41274911	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	175	549	1	ENST00000349496.5:c.1161T>G	p.Asn387Lys	p.N387K	ENST00000349496	NM_001904.3	387	aaT/aaG						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42790999	42790999	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	186	690	0	ENST00000575354.2:c.144G>T	p.Gln48His	p.Q48H	ENST00000575354	NM_015125.3	48	caG/caT						NEWRECORD																																																																									
PRKAR1A	5573	MSKCC	GRCh37	17	66526059	66526059	+	splice_acceptor_variant	Splice_Site	DEL	A	A	-			P-0010914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	207	493	1	ENST00000358598.2:c.892-2del		p.X298_splice	ENST00000358598	NM_212471.2	298							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	77	375	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0012878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	135	267	1	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag						NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36938239	36938239	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199991273		P-0012878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1899	146	530	0	ENST00000361632.4:c.722C>T	p.Ala241Val	p.A241V	ENST00000361632		241	gCg/gTg						NEWRECORD																																																																									
FYN	2534	MSKCC	GRCh37	6	112041211	112041211	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140762956		P-0012878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1790	148	641	5	ENST00000368678.4:c.44C>T	p.Thr15Met	p.T15M	ENST00000368678		15	aCg/aTg						NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14020478	14020478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1172	104	402	1	ENST00000311895.7:c.449G>A	p.Arg150His	p.R150H	ENST00000311895	NM_005236.2	150	cGc/cAc						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37627224	37627224	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200075664		P-0012878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	81	388	0	ENST00000447079.4:c.1139G>A	p.Arg380His	p.R380H	ENST00000447079	NM_015083.1	380	cGt/cAt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106064	27106064	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	120	392	1	ENST00000324856.7:c.5675del	p.Thr1892LysfsTer31	p.T1892Kfs*31	ENST00000324856	NM_006015.4	1892	aCa/aa						NEWRECORD																																																																									
TSHR	7253	MSKCC	GRCh37	14	81609836	81609839	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0011064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	116	331	0	ENST00000298171.2:c.1434_1437del	p.His478GlnfsTer34	p.H478Qfs*34	ENST00000298171	NM_000369.2	478	caCTCT/ca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0012592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	381	387	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0012592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	431	424	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	298	435	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
CUL3	8452	MSKCC	GRCh37	2	225365079	225365079	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0013431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	92	416	0	ENST00000264414.4:c.1610+1G>A		p.X537_splice	ENST00000264414	NM_003590.4	537							NEWRECORD																																																																									
MAP2K1	5604	MSKCC	GRCh37	15	66729174	66729174	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	109	495	0	ENST00000307102.5:c.382G>T	p.Gly128Cys	p.G128C	ENST00000307102	NM_002755.3	128	Ggc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578443	7578444	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0013431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	175	444	0	ENST00000269305.4:c.486_487del	p.Tyr163GlnfsTer17	p.Y163Qfs*17	ENST00000269305	NM_001126112.2	162	atCTac/atac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	70	343	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0010788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	69	301	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575194	48575194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	72	269	0	ENST00000342988.3:c.388C>T	p.Pro130Ser	p.P130S	ENST00000342988	NM_005359.5	130	Cca/Tca						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56440643	56440643	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	171	565	2	ENST00000407977.2:c.575del	p.Pro192ArgfsTer11	p.P192Rfs*11	ENST00000407977		192	cCg/cg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	65	887	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27057853	27057853	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1085	93	1170	2	ENST00000324856.7:c.1561C>T	p.Gln521Ter	p.Q521*	ENST00000324856	NM_006015.4	521	Cag/Tag						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70120431	70120431	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1396	74	1626	2	ENST00000245479.2:c.1437del	p.Ile480SerfsTer43	p.I480Sfs*43	ENST00000245479	NM_000346.3	478	aCc/ac						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1218454	1218454	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	56	711	0	ENST00000326873.7:c.329T>A	p.Val110Asp	p.V110D	ENST00000326873	NM_000455.4	110	gTc/gAc						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602584	10602584	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	67	639	0	ENST00000171111.5:c.994G>C	p.Gly332Arg	p.G332R	ENST00000171111	NM_203500.1	332	Ggc/Cgc						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52620683	52620683	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	26	354	0	ENST00000394830.3:c.3070G>T	p.Glu1024Ter	p.E1024*	ENST00000394830	NM_018313.4	1024	Gaa/Taa						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52621452	52621452	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0014207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	57	542	0	ENST00000394830.3:c.2966-1G>C		p.X989_splice	ENST00000394830	NM_018313.4	989							NEWRECORD																																																																									
PREX2	80243	MSKCC	GRCh37	8	68968209	68968209	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0014207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	60	888	0	ENST00000288368.4:c.1238G>C	p.Ser413Thr	p.S413T	ENST00000288368	NM_024870.2	413	aGc/aCc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	84	850	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578415	7578415	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	36	739	0	ENST00000269305.4:c.515T>A	p.Val172Asp	p.V172D	ENST00000269305	NM_001126112.2	172	gTt/gAt						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151945336	151945336	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	12	177	0	ENST00000262189.6:c.2183A>C	p.Glu728Ala	p.E728A	ENST00000262189	NM_170606.2	728	gAa/gCa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	258	454	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	306	683	2	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3820624	3820624	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	201	652	0	ENST00000262367.5:c.2827C>T	p.Gln943Ter	p.Q943*	ENST00000262367	NM_004380.2	943	Cag/Tag						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162688856	162688856	+	start_lost	Translation_Start_Site	SNP	G	G	C			P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	129	434	0	ENST00000367921.3:c.3G>C	p.Met1?	p.M1?	ENST00000367921	NM_006182.2	1	atG/atC						NEWRECORD																																																																									
CYSLTR2	57105	MSKCC	GRCh37	13	49281669	49281669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	386	665	1	ENST00000282018.3:c.716G>T	p.Arg239Leu	p.R239L	ENST00000282018	NM_020377.2	239	cGg/cTg						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81946264	81946264	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	156	609	0	ENST00000359376.3:c.1997A>G	p.Asp666Gly	p.D666G	ENST00000359376	NM_002661.3	666	gAc/gGc						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15288550	15288550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	13	50	0	ENST00000263388.2:c.4189G>A	p.Gly1397Arg	p.G1397R	ENST00000263388	NM_000435.2	1397	Ggg/Agg						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41573913	41573913	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	283	622	0	ENST00000263253.7:c.6198G>T	p.Gln2066His	p.Q2066H	ENST00000263253	NM_001429.3	2066	caG/caT						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187535500	187535500	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	68	259	0	ENST00000441802.2:c.9076-2A>T		p.X3026_splice	ENST00000441802	NM_005245.3	3026							NEWRECORD																																																																									
IFNGR1	3459	MSKCC	GRCh37	6	137525469	137525469	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	47	429	0	ENST00000367739.4:c.546G>T	p.Glu182Asp	p.E182D	ENST00000367739	NM_000416.2	182	gaG/gaT						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47038783	47038783	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	322	681	0	ENST00000329236.7:c.559G>T	p.Glu187Ter	p.E187*	ENST00000329236	NM_001204466.1	187	Gag/Tag						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47044577	47044577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	274	796	3	ENST00000329236.7:c.1840G>T	p.Ala614Ser	p.A614S	ENST00000329236	NM_001204466.1	614	Gct/Tct						NEWRECORD																																																																									
MLL4	9757	MSKCC	GRCh37	19	36211003	36211003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	214	812	0	ENST00000222270.7:c.754C>T	p.Pro252Ser	p.P252S	ENST00000222270	NM_014727.1	252	Ccc/Tcc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578226	7578226	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1464727668		P-0013964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	545	701	0	ENST00000269305.4:c.623A>T	p.Asp208Val	p.D208V	ENST00000269305	NM_001126112.2	208	gAc/gTc						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39923601	39923601	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	449	327	0	ENST00000378444.4:c.3490C>T	p.Arg1164Ter	p.R1164*	ENST00000378444	NM_001123385.1	1164	Cga/Tga						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	402121	402121	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	498	723	0	ENST00000399788.2:c.4670A>T	p.Lys1557Ile	p.K1557I	ENST00000399788	NM_001042603.1	1557	aAa/aTa						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142226774	142226774	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0013964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	207	338	2	ENST00000350721.4:c.5030A>T	p.Gln1677Leu	p.Q1677L	ENST00000350721	NM_001184.3	1677	cAg/cTg						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152265629	152265629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	55	136	1	ENST00000206249.3:c.1082C>T	p.Ala361Val	p.A361V	ENST00000206249	NM_000125.3	361	gCg/gTg						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72984856	72984856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	172	362	0	ENST00000268489.5:c.2728G>A	p.Glu910Lys	p.E910K	ENST00000268489	NM_006885.3	910	Gag/Aag						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061098	38061098	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	26	47	0	ENST00000250448.2:c.891del	p.Ser298LeufsTer23	p.S298Lfs*23	ENST00000250448	NM_004496.3	297	ccC/cc						NEWRECORD																																																																									
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520009		P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	54	397	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa						NEWRECORD																																																																									
SDHD	6392	MSKCC	GRCh37	11	111958593	111958593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	100	419	0	ENST00000375549.3:c.65G>A	p.Arg22Gln	p.R22Q	ENST00000375549	NM_003002.3	22	cGa/cAa						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720870	89720870	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	114	339	0	ENST00000371953.3:c.1021T>G	p.Phe341Val	p.F341V	ENST00000371953	NM_000314.4	341	Ttt/Gtt						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	178	717	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25976476	25976476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1130	235	934	1	ENST00000435504.4:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000435504		357	Cga/Tga						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73347916	73347916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139907646		P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	150	528	0	ENST00000377767.4:c.1145G>A	p.Arg382Gln	p.R382Q	ENST00000377767	NM_014953.3	382	cGa/cAa						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	61	582	1	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70333410	70333410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	187	758	0	ENST00000373644.4:c.1315C>T	p.Pro439Ser	p.P439S	ENST00000373644	NM_030625.2	439	Cca/Tca						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31389107	31389107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	157	602	0	ENST00000328111.2:c.2020G>A	p.Glu674Lys	p.E674K	ENST00000328111	NM_006892.3	674	Gaa/Aaa						NEWRECORD																																																																									
PIK3R3	8503	MSKCC	GRCh37	1	46509395	46509395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	153	682	2	ENST00000262741.5:c.1336G>A	p.Val446Ile	p.V446I	ENST00000262741	NM_003629.3	446	Gtc/Atc						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25982386	25982386	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	168	547	0	ENST00000435504.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000435504		302	Cga/Tga						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212289020	212289020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	109	532	0	ENST00000342788.4:c.2726C>A	p.Thr909Asn	p.T909N	ENST00000342788	NM_005235.2	909	aCt/aAt						NEWRECORD																																																																									
MLH1	4292	MSKCC	GRCh37	3	37070325	37070325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	168	778	2	ENST00000231790.2:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000231790	NM_000249.3	487	cGa/cAa						NEWRECORD																																																																									
MYD88	4615	MSKCC	GRCh37	3	38181926	38181926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	38	518	1	ENST00000396334.3:c.550G>A	p.Asp184Asn	p.D184N	ENST00000396334	NM_002468.4	184	Gac/Aac						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47164385	47164385	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	141	442	0	ENST00000409792.3:c.1741G>T	p.Glu581Ter	p.E581*	ENST00000409792	NM_014159.6	581	Gaa/Taa						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89521741	89521741	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	99	441	2	ENST00000336596.2:c.2818T>C	p.Cys940Arg	p.C940R	ENST00000336596	NM_005233.5	940	Tgt/Cgt						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66189868	66189868	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	178	685	0	ENST00000273854.3:c.3078G>T	p.Met1026Ile	p.M1026I	ENST00000273854	NM_004439.5	1026	atG/atT						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66286249	66286249	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	151	607	0	ENST00000273854.3:c.1437A>C	p.Lys479Asn	p.K479N	ENST00000273854	NM_004439.5	479	aaA/aaC						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38954911	38954911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	59	517	0	ENST00000357387.3:c.2662C>A	p.His888Asn	p.H888N	ENST00000357387	NM_152756.3	888	Cac/Aac						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86659183	86659183	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	105	388	0	ENST00000274376.6:c.1472A>C	p.Lys491Thr	p.K491T	ENST00000274376	NM_002890.2	491	aAa/aCa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112177368	112177368	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	136	466	0	ENST00000257430.4:c.6077C>A	p.Ser2026Tyr	p.S2026Y	ENST00000257430	NM_000038.5	2026	tCt/tAt						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176709529	176709529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1069	207	808	0	ENST00000439151.2:c.5956C>T	p.Arg1986Cys	p.R1986C	ENST00000439151	NM_022455.4	1986	Cgc/Tgc						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117710773	117710773	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	141	684	0	ENST00000368508.3:c.1499A>C	p.Lys500Thr	p.K500T	ENST00000368508	NM_002944.2	500	aAa/aCa						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81331930	81331930	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	63	439	0	ENST00000222390.5:c.2154A>C	p.Lys718Asn	p.K718N	ENST00000222390	NM_000601.4	718	aaA/aaC						NEWRECORD																																																																									
CDK6	1021	MSKCC	GRCh37	7	92300747	92300747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	79	304	0	ENST00000265734.4:c.640C>T	p.Arg214Cys	p.R214C	ENST00000265734	NM_001259.6	214	Cgt/Tgt						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5089782	5089782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	137	556	0	ENST00000381652.3:c.2680G>A	p.Asp894Asn	p.D894N	ENST00000381652	NM_004972.3	894	Gac/Aac						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89690835	89690835	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	114	336	0	ENST00000371953.3:c.242T>G	p.Phe81Cys	p.F81C	ENST00000371953	NM_000314.4	81	tTt/tGt						NEWRECORD																																																																									
MYOD1	4654	MSKCC	GRCh37	11	17741687	17741687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	136	506	2	ENST00000250003.3:c.358C>T	p.Arg120Cys	p.R120C	ENST00000250003	NM_002478.4	120	Cgc/Tgc						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28608081	28608081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	211	900	0	ENST00000241453.7:c.1885G>A	p.Ala629Thr	p.A629T	ENST00000241453	NM_004119.2	629	Gct/Act						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3778477	3778477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	88	834	0	ENST00000262367.5:c.6571G>A	p.Glu2191Lys	p.E2191K	ENST00000262367	NM_004380.2	2191	Gaa/Aaa						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9858255	9858255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	96	694	2	ENST00000330684.3:c.3146C>T	p.Pro1049Leu	p.P1049L	ENST00000330684	NM_001134407.1	1049	cCt/cTt						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72830931	72830931	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	238	1259	2	ENST00000268489.5:c.5650G>T	p.Glu1884Ter	p.E1884*	ENST00000268489	NM_006885.3	1884	Gaa/Taa						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29654829	29654829	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	122	450	0	ENST00000358273.4:c.5581A>C	p.Asn1861His	p.N1861H	ENST00000358273	NM_001042492.2	1861	Aat/Cat						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9624781	9624781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	79	322	0	ENST00000353224.5:c.196C>T	p.Pro66Ser	p.P66S	ENST00000353224	NM_177990.2	66	Cct/Tct						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40980926	40980926	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	86	357	0	ENST00000373198.4:c.1561-1G>A		p.X521_splice	ENST00000373198	NM_133170.3	521							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	126	413	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10597401	10597401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	210	558	2	ENST00000171111.5:c.1802G>T	p.Arg601Leu	p.R601L	ENST00000171111	NM_203500.1	601	cGg/cTg						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66189914	66189914	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	114	469	0	ENST00000273854.3:c.3032C>A	p.Thr1011Asn	p.T1011N	ENST00000273854	NM_004439.5	1011	aCt/aAt						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100999797	100999797	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	139	648	0	ENST00000325455.5:c.5C>G	p.Thr2Ser	p.T2S	ENST00000325455	NM_001202474.3	2	aCt/aGt						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21563303	21563303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	146	545	0	ENST00000382592.4:c.616G>A	p.Glu206Lys	p.E206K	ENST00000382592	NM_014572.2	206	Gag/Aag						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56440710	56440710	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	137	589	2	ENST00000407977.2:c.508G>T	p.Glu170Ter	p.E170*	ENST00000407977		170	Gag/Tag						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11141499	11141499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	206	488	0	ENST00000344626.4:c.3476G>A	p.Gly1159Glu	p.G1159E	ENST00000344626	NM_003072.3	1159	gGg/gAg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220498	1220498	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	160	463	0	ENST00000326873.7:c.592del	p.Ala198ProfsTer89	p.A198Pfs*89	ENST00000326873	NM_000455.4	197	gtG/gt						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3832880	3832880	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	181	406	0	ENST00000262367.5:c.1378G>T	p.Val460Phe	p.V460F	ENST00000262367	NM_004380.2	460	Gtt/Ttt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0010506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	226	458	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	117	494	4	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56482342	56482342	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	201	618	0	ENST00000267101.3:c.890A>C	p.Asp297Ala	p.D297A	ENST00000267101	NM_001982.3	297	gAt/gCt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604785	48604785	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	144	352	0	ENST00000342988.3:c.1607T>G	p.Leu536Arg	p.L536R	ENST00000342988	NM_005359.5	536	cTa/cGa						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31386390	31386390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	186	478	0	ENST00000328111.2:c.1615C>T	p.Arg539Trp	p.R539W	ENST00000328111	NM_006892.3	539	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7572936	7572940	+	frameshift_variant	Frame_Shift_Del	DEL	GTCAG	GTCAG	-			P-0010506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	272	883	0	ENST00000269305.4:c.1169_1173del	p.Pro390LeufsTer79	p.P390Lfs*79	ENST00000269305	NM_001126112.2	390	cCTGAC/c						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37687311	37687313	+	frameshift_variant	Frame_Shift_Del	DEL	TGC	TGC	GG			P-0010506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2886	175	511	0	ENST00000447079.4:c.4215_4217delinsGG	p.Phe1405LeufsTer6	p.F1405Lfs*6	ENST00000447079	NM_015083.1	1405	ttTGCc/ttGGc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011323-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	23	362	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29940466	29940466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			44	20	486	0	ENST00000389048.3:c.765C>A	p.Phe255Leu	p.F255L	ENST00000389048	NM_004304.4	255	ttC/ttA						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212248429	212248429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			31	17	426	0	ENST00000342788.4:c.3838G>A	p.Glu1280Lys	p.E1280K	ENST00000342788	NM_005235.2	1280	Gag/Aag						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52442024	52442024	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	44	365	0	ENST00000460680.1:c.325G>T	p.Gly109Ter	p.G109*	ENST00000460680	NM_004656.3	109	Gga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	101	279	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73350062	73350062	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0010514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			22	21	339	1	ENST00000377767.4:c.822+1G>T		p.X274_splice	ENST00000377767	NM_014953.3	274							NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0013031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	187	736	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112179000	112179000	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0013031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	120	493	0	ENST00000257430.4:c.7709C>G	p.Ser2570Ter	p.S2570*	ENST00000257430	NM_000038.5	2570	tCa/tGa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151876968	151876968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	163	695	0	ENST00000262189.6:c.7393C>T	p.Pro2465Ser	p.P2465S	ENST00000262189	NM_170606.2	2465	Ccc/Tcc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151877184	151877184	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	147	503	0	ENST00000262189.6:c.7177C>T	p.Gln2393Ter	p.Q2393*	ENST00000262189	NM_170606.2	2393	Cag/Tag						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151877867	151877867	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	140	625	0	ENST00000262189.6:c.7078C>G	p.Pro2360Ala	p.P2360A	ENST00000262189	NM_170606.2	2360	Cca/Gca						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151877885	151877885	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	128	558	0	ENST00000262189.6:c.7060C>G	p.Gln2354Glu	p.Q2354E	ENST00000262189	NM_170606.2	2354	Caa/Gaa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151877926	151877926	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	133	457	0	ENST00000262189.6:c.7019C>G	p.Ser2340Cys	p.S2340C	ENST00000262189	NM_170606.2	2340	tCt/tGt						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151878028	151878028	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	127	507	0	ENST00000262189.6:c.6917C>G	p.Pro2306Arg	p.P2306R	ENST00000262189	NM_170606.2	2306	cCa/cGa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151878212	151878212	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	148	632	0	ENST00000262189.6:c.6733C>G	p.Pro2245Ala	p.P2245A	ENST00000262189	NM_170606.2	2245	Cca/Gca						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81888065	81888065	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	239	933	2	ENST00000359376.3:c.213del	p.Glu72LysfsTer55	p.E72Kfs*55	ENST00000359376	NM_002661.3	70	atA/at						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0013504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	53	497	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0013504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	42	387	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110436576	110436576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	69	328	0	ENST00000375856.3:c.1825G>A	p.Ala609Thr	p.A609T	ENST00000375856	NM_003749.2	609	Gcg/Acg						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	235	547	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg						NEWRECORD																																																																									
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0014283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	150	353	0	ENST00000412916.2:c.165+1G>C		p.X55_splice	ENST00000412916		55							NEWRECORD																																																																									
HIST1H3J	8356	MSKCC	GRCh37	6	27858353	27858353	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138060838		P-0014283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	81	453	0	ENST00000359303.2:c.218G>A	p.Arg73Gln	p.R73Q	ENST00000359303	NM_003535.2	73	cGa/cAa						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31395608	31395608	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	185	521	0	ENST00000328111.2:c.2461A>C	p.Met821Leu	p.M821L	ENST00000328111	NM_006892.3	821	Atg/Ctg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	1095	673	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
MPL	4352	MSKCC	GRCh37	1	43814667	43814667	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	97	379	0	ENST00000372470.3:c.1462G>C	p.Glu488Gln	p.E488Q	ENST00000372470	NM_005373.2	488	Gag/Cag						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43609105	43609105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	471	858	0	ENST00000355710.3:c.1861G>A	p.Glu621Lys	p.E621K	ENST00000355710	NM_020975.4	621	Gag/Aag						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46244128	46244132	+	frameshift_variant	Frame_Shift_Del	DEL	GTTCT	GTTCT	-			P-0014313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	100	484	0	ENST00000334344.6:c.2225_2229del	p.Ser742CysfsTer5	p.S742Cfs*5	ENST00000334344	NM_152641.2	741	aGTTCT/a						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577052	7577055	+	frameshift_variant	Frame_Shift_Del	DEL	GAGG	GAGG	-			P-0014313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	318	775	0	ENST00000269305.4:c.883_886del	p.Pro295ThrfsTer49	p.P295Tfs*49	ENST00000269305	NM_001126112.2	295	CCTCac/ac						NEWRECORD																																																																									
EZH1	2145	MSKCC	GRCh37	17	40876370	40876370	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	193	850	0	ENST00000428826.2:c.319T>G	p.Leu107Val	p.L107V	ENST00000428826		107	Ttg/Gtg						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36252994	36252994	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1562	258	595	2	ENST00000300305.3:c.368A>G	p.Asp123Gly	p.D123G	ENST00000300305		123	gAt/gGt						NEWRECORD																																																																									
PPARG	5468	MSKCC	GRCh37	3	12447384	12447384	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	98	506	0	ENST00000287820.6:c.623T>G	p.Ile208Ser	p.I208S	ENST00000287820	NM_015869.4	208	aTc/aGc						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66270169	66270169	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	84	500	0	ENST00000273854.3:c.1713G>T	p.Gln571His	p.Q571H	ENST00000273854	NM_004439.5	571	caG/caT						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56160603	56160603	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	241	481	0	ENST00000399503.3:c.877C>G	p.Pro293Ala	p.P293A	ENST00000399503	NM_005921.1	293	Cca/Gca						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55210056	55210056	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	272	597	0	ENST00000275493.2:c.166A>C	p.Asn56His	p.N56H	ENST00000275493	NM_005228.3	56	Aat/Cat						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140477870	140477870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	107	567	0	ENST00000288602.6:c.1438G>T	p.Val480Leu	p.V480L	ENST00000288602	NM_004333.4	480	Gtg/Ttg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	150	457	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133759554	133759554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	145	771	0	ENST00000318560.5:c.1877G>A	p.Gly626Asp	p.G626D	ENST00000318560	NM_005157.4	626	gGc/gAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	75	387	0	ENST00000269305.4:c.527G>C	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	tGc/tCc						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187532765	187532765	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	98	613	0	ENST00000441802.2:c.9628C>G	p.Leu3210Val	p.L3210V	ENST00000441802	NM_005245.3	3210	Ctg/Gtg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs780442292		P-0012418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	220	878	0	ENST00000269305.4:c.401T>G	p.Phe134Cys	p.F134C	ENST00000269305	NM_001126112.2	134	tTt/tGt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0012418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	29	888	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0012418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1134	86	1354	2	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42052629	42052629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1390	329	1716	3	ENST00000219905.7:c.7300C>T	p.Arg2434Trp	p.R2434W	ENST00000219905	NM_001164273.1	2434	Cgg/Tgg						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134967269	134967269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	90	1065	1	ENST00000398015.3:c.2608C>T	p.Arg870Trp	p.R870W	ENST00000398015	NM_004441.4	870	Cgg/Tgg						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41265709	41266219	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAG	TCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAG	-			P-0012418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	113	140	0	ENST00000349496.5:c.13+141_220del		p.X5_splice	ENST00000349496	NM_001904.3	5							NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46254586	46254586	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0012418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	176	885	0	ENST00000334344.6:c.4776del	p.Asn1592LysfsTer34	p.N1592Kfs*34	ENST00000334344	NM_152641.2	1592	aaC/aa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0014497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	354	570	2	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	103	495	1	ENST00000269305.4:c.773A>C	p.Glu258Ala	p.E258A	ENST00000269305	NM_001126112.2	258	gAa/gCa						NEWRECORD																																																																									
IGF1	3479	MSKCC	GRCh37	12	102811690	102811690	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	74	724	2	ENST00000307046.8:c.494C>A	p.Thr165Lys	p.T165K	ENST00000307046	NM_001111285.1	165	aCa/aAa						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2127622	2127622	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	54	649	1	ENST00000219476.3:c.2861A>T	p.Lys954Ile	p.K954I	ENST00000219476	NM_000548.3	954	aAa/aTa						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15375389	15375389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	45	540	0	ENST00000263377.2:c.1038G>C	p.Lys346Asn	p.K346N	ENST00000263377	NM_058243.2	346	aaG/aaC						NEWRECORD																																																																									
MLL4	9757	MSKCC	GRCh37	19	36214714	36214714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	34	457	1	ENST00000222270.7:c.3140G>A	p.Arg1047Gln	p.R1047Q	ENST00000222270	NM_014727.1	1047	cGg/cAg						NEWRECORD																																																																									
ERF	2077	MSKCC	GRCh37	19	42753293	42753293	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	66	894	0	ENST00000222329.4:c.971A>G	p.Tyr324Cys	p.Y324C	ENST00000222329	NM_006494.2	324	tAc/tGc						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25967284	25967284	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	44	431	0	ENST00000435504.4:c.1922G>T	p.Arg641Leu	p.R641L	ENST00000435504		641	cGt/cTt						NEWRECORD																																																																									
XPO1	7514	MSKCC	GRCh37	2	61717785	61717785	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	48	436	0	ENST00000401558.2:c.2014G>C	p.Ala672Pro	p.A672P	ENST00000401558	NM_003400.3	672	Gca/Cca						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189526205	189526205	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	148	702	2	ENST00000264731.3:c.469G>T	p.Asp157Tyr	p.D157Y	ENST00000264731	NM_003722.4	157	Gat/Tat						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180057792	180057792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	22	354	1	ENST00000261937.6:c.163C>T	p.His55Tyr	p.H55Y	ENST00000261937	NM_182925.4	55	Cac/Tac						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30679196	30679196	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	53	487	0	ENST00000376406.3:c.2214G>C	p.Gln738His	p.Q738H	ENST00000376406	NM_014641.2	738	caG/caC						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	120	155	2	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0010719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	213	387	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0013785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	187	442	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0013785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	421	695	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	493	491	3	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31021190	31021190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	344	620	0	ENST00000375687.4:c.1189C>T	p.Arg397Cys	p.R397C	ENST00000375687	NM_015338.5	397	Cgt/Tgt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0013491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	136	330	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	532	514	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913273		P-0013491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	141	301	0	ENST00000263967.3:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000263967	NM_006218.2	542	Gaa/Caa						NEWRECORD																																																																									
FUBP1	8880	MSKCC	GRCh37	1	78433848	78433848	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0013491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	301	681	0	ENST00000370768.2:c.250+1G>C		p.X84_splice	ENST00000370768	NM_003902.3	84							NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0014518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	203	353	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36164586	36164586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	107	393	0	ENST00000300305.3:c.1289C>T	p.Pro430Leu	p.P430L	ENST00000300305		430	cCg/cTg						NEWRECORD																																																																									
RAC1	5879	MSKCC	GRCh37	7	6439805	6439805	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	75	307	0	ENST00000356142.4:c.331A>T	p.Asn111Tyr	p.N111Y	ENST00000356142	NM_018890.3	111	Aat/Tat						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	95	506	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs530941076		P-0012844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1437	157	835	0	ENST00000269305.4:c.658T>C	p.Tyr220His	p.Y220H	ENST00000269305	NM_001126112.2	220	Tat/Cat						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974799	21974799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	28	129	1	ENST00000304494.5:c.28G>T	p.Glu10Ter	p.E10*	ENST00000304494	NM_000077.4	10	Gag/Tag						NEWRECORD																																																																									
PLK2	10769	MSKCC	GRCh37	5	57751477	57751477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1504	118	763	1	ENST00000274289.3:c.1514C>A	p.Thr505Asn	p.T505N	ENST00000274289	NM_006622.3	505	aCc/aAc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	23	336	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0011481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	22	491	0	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579353	7579366	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CCAGACGGAAACCG	CCAGACGGAAACCG	-			P-0014624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	367	664	0	ENST00000269305.4:c.321_334del	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taCGGTTTCCGTCTGGgc/tagc						NEWRECORD																																																																									
ICOSLG	23308	MSKCC	GRCh37	21	45655159	45655159	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	60	297	0	ENST00000407780.3:c.693G>C	p.Gln231His	p.Q231H	ENST00000407780	NM_001283052.1	231	caG/caC						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	565	521	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3790455	3790455	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1487	179	694	1	ENST00000262367.5:c.4078C>T	p.Arg1360Ter	p.R1360*	ENST00000262367	NM_004380.2	1360	Cga/Tga						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36259192	36259192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	414	605	1	ENST00000300305.3:c.299C>T	p.Ser100Phe	p.S100F	ENST00000300305		100	tCc/tTc						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89725214	89725214	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			32	12	17	0	ENST00000371953.3:c.1197A>T	p.Gln399His	p.Q399H	ENST00000371953	NM_000314.4	399	caA/caT						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108163522	108163522	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0011136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	126	457	0	ENST00000278616.4:c.4611+2T>C		p.X1537_splice	ENST00000278616	NM_000051.3	1537							NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143129600	143129600	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	137	422	0	ENST00000262992.4:c.1050G>C	p.Gln350His	p.Q350H	ENST00000262992	NM_001101669.1	350	caG/caC						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49434134	49434134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	84	499	0	ENST00000301067.7:c.7419G>T	p.Gln2473His	p.Q2473H	ENST00000301067	NM_003482.3	2473	caG/caT						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9862796	9862796	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	101	585	0	ENST00000330684.3:c.2507T>A	p.Ile836Asn	p.I836N	ENST00000330684	NM_001134407.1	836	aTc/aAc						NEWRECORD																																																																									
MAPK1	5594	MSKCC	GRCh37	22	22160199	22160199	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	93	597	0	ENST00000215832.6:c.432C>A	p.Asn144Lys	p.N144K	ENST00000215832	NM_002745.4	144	aaC/aaA						NEWRECORD																																																																									
ERG	2078	MSKCC	GRCh37	21	39795407	39795407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	146	693	0	ENST00000288319.7:c.313G>A	p.Gly105Ser	p.G105S	ENST00000288319	NM_182918.3	105	Ggc/Agc						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	160	520	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0011234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	119	371	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578184	7578208	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTCATAGGGCACCACCACACTAT	GGCTCATAGGGCACCACCACACTAT	-			P-0011234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	236	561	0	ENST00000269305.4:c.641_665del	p.His214ArgfsTer25	p.H214Rfs*25	ENST00000269305	NM_001126112.2	214	cATAGTGTGGTGGTGCCCTATGAGCCg/cg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0012086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	371	531	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt						NEWRECORD																																																																									
SDHB	6390	MSKCC	GRCh37	1	17349116	17349116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1327	72	497	0	ENST00000375499.3:c.752G>A	p.Arg251Lys	p.R251K	ENST00000375499	NM_003000.2	251	aGg/aAg						NEWRECORD																																																																									
MYCL1	4610	MSKCC	GRCh37	1	40366767	40366767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			4756	351	297	0	ENST00000397332.2:c.430G>A	p.Ala144Thr	p.A144T	ENST00000397332	NM_001033082.2	144	Gct/Act						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142226946	142226946	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	227	304	0	ENST00000350721.4:c.4858A>T	p.Thr1620Ser	p.T1620S	ENST00000350721	NM_001184.3	1620	Act/Tct						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21549052	21549052	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	205	247	0	ENST00000382592.4:c.3224A>T	p.Asp1075Val	p.D1075V	ENST00000382592	NM_014572.2	1075	gAt/gTt						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28891719	28891719	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	347	480	1	ENST00000282397.4:c.3302C>A	p.Pro1101Gln	p.P1101Q	ENST00000282397	NM_002019.4	1101	cCa/cAa						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38064141	38064141	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	165	580	0	ENST00000250448.2:c.37A>G	p.Ser13Gly	p.S13G	ENST00000250448	NM_004496.3	13	Agc/Ggc						NEWRECORD																																																																									
GPS2	2874	MSKCC	GRCh37	17	7217247	7217247	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	434	689	0	ENST00000380728.2:c.458T>G	p.Met153Arg	p.M153R	ENST00000380728		153	aTg/aGg						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15375349	15375349	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	315	489	0	ENST00000263377.2:c.1078A>G	p.Ile360Val	p.I360V	ENST00000263377	NM_058243.2	360	Atc/Gtc						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49427973	49427973	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	144	433	0	ENST00000301067.7:c.10617del	p.Lys3540ArgfsTer118	p.K3540Rfs*118	ENST00000301067	NM_003482.3	3539	cgG/cg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0010425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	85	568	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	40	347	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0010425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	57	432	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	162394380	162394380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	89	790	0	ENST00000366898.1:c.688G>A	p.Ala230Thr	p.A230T	ENST00000366898	NM_004562.2	230	Gca/Aca						NEWRECORD																																																																									
EZH2	2146	MSKCC	GRCh37	7	148506218	148506218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	74	515	0	ENST00000320356.2:c.2140G>A	p.Gly714Ser	p.G714S	ENST00000320356	NM_004456.4	714	Ggt/Agt						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692884	89692884	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			462	92	509	2	ENST00000371953.3:c.368A>G	p.His123Arg	p.H123R	ENST00000371953	NM_000314.4	123	cAc/cGc						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89693005	89693010	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	AAAGGT	AAAGGT	-			P-0010419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			548	43	541	0	ENST00000371953.3:c.491_492+4del		p.X164_splice	ENST00000371953	NM_000314.4	164							NEWRECORD																																																																									
CBFB	865	MSKCC	GRCh37	16	67063372	67063372	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			451	123	670	0	ENST00000412916.2:c.62T>G	p.Leu21Arg	p.L21R	ENST00000412916		21	cTg/cGg						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68862139	68862139	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			458	148	716	0	ENST00000261769.5:c.2231del	p.Pro744GlnfsTer26	p.P744Qfs*26	ENST00000261769	NM_004360.3	743	Ccc/cc						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602907	10602907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1063	70	800	0	ENST00000171111.5:c.671C>T	p.Ser224Phe	p.S224F	ENST00000171111	NM_203500.1	224	tCc/tTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	48	583	0	ENST00000269305.4:c.524del	p.Arg175ProfsTer72	p.R175Pfs*72	ENST00000269305	NM_001126112.2	175	cGc/cc						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134851661	134851661	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	82	702	0	ENST00000398015.3:c.1067A>G	p.Tyr356Cys	p.Y356C	ENST00000398015	NM_004441.4	356	tAc/tGc						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115828	8115828	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1306	89	1175	0	ENST00000346208.3:c.1174A>T	p.Asn392Tyr	p.N392Y	ENST00000346208		392	Aac/Tac						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99434723	99434723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	70	832	0	ENST00000268035.6:c.810G>T	p.Arg270Ser	p.R270S	ENST00000268035	NM_000875.3	270	agG/agT						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602853	10602853	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1096	70	716	1	ENST00000171111.5:c.725A>T	p.Glu242Val	p.E242V	ENST00000171111	NM_203500.1	242	gAg/gTg						NEWRECORD																																																																									
DNAJB1	3337	MSKCC	GRCh37	19	14627813	14627813	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1578	95	1224	0	ENST00000254322.2:c.257A>G	p.Asn86Ser	p.N86S	ENST00000254322	NM_006145.1	86	aAt/aGt						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9546619	9546619	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1211	91	999	0	ENST00000353224.5:c.1403A>T	p.Glu468Val	p.E468V	ENST00000353224	NM_177990.2	468	gAg/gTg						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66937385	66937385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1224	66	1121	2	ENST00000374690.3:c.2239G>T	p.Val747Leu	p.V747L	ENST00000374690	NM_000044.3	747	Gtg/Ttg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0012389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	316	895	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0011502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	100	540	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720833	89720836	+	frameshift_variant	Frame_Shift_Del	DEL	AAAT	AAAT	-			P-0011502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	27	181	0	ENST00000371953.3:c.987_990delTAAA	p.Asn329LysfsTer14	p.N329Kfs*14	ENST00000371953	NM_000314.4	328	gcAAAT/gc						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12028640	12028647	+	frameshift_variant	Frame_Shift_Del	DEL	ACAAGGAT	ACAAGGAT	-			P-0011502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1177	75	444	0	ENST00000353533.5:c.844_851del	p.Gln282Ter	p.Q282*	ENST00000353533	NM_003010.3	281	cgACAAGGATat/cgat						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2122982	2122982	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0013555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	58	881	0	ENST00000219476.3:c.2353C>T	p.Gln785Ter	p.Q785*	ENST00000219476	NM_000548.3	785	Cag/Tag						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2133694	2133694	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0013555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	43	883	1	ENST00000219476.3:c.3884-2A>G		p.X1295_splice	ENST00000219476	NM_000548.3	1295							NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212812340	212812340	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0010796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	137	423	0	ENST00000342788.4:c.236C>A	p.Ser79Tyr	p.S79Y	ENST00000342788	NM_005235.2	79	tCt/tAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	39	500	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0012746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	43	651	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0012746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	36	673	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11317082	11317082	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	61	685	2	ENST00000361445.4:c.412G>T	p.Asp138Tyr	p.D138Y	ENST00000361445	NM_004958.3	138	Gac/Tac						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32178657	32178657	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	46	548	0	ENST00000375023.3:c.2737T>A	p.Ser913Thr	p.S913T	ENST00000375023	NM_004557.3	913	Tcc/Acc						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43622151	43622151	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	56	646	2	ENST00000355710.3:c.3168G>T	p.Trp1056Cys	p.W1056C	ENST00000355710	NM_020975.4	1056	tgG/tgT						NEWRECORD																																																																									
ERCC2	2068	MSKCC	GRCh37	19	45871934	45871934	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	65	714	1	ENST00000391945.4:c.314T>C	p.Leu105Pro	p.L105P	ENST00000391945	NM_000400.3	105	cTg/cCg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40735541	40735541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	37	441	0	ENST00000373198.4:c.3332G>T	p.Gly1111Val	p.G1111V	ENST00000373198	NM_133170.3	1111	gGc/gTc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40980862	40980862	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	42	534	0	ENST00000373198.4:c.1624G>T	p.Val542Leu	p.V542L	ENST00000373198	NM_133170.3	542	Gtg/Ttg						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	37	313	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1222983	1222983	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs398123406		P-0013696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	50	218	1	ENST00000326873.7:c.921-1G>T		p.X307_splice	ENST00000326873	NM_000455.4	307							NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65305390	65305390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	43	539	0	ENST00000342505.4:c.2738A>T	p.Glu913Val	p.E913V	ENST00000342505	NM_002227.2	913	gAg/gTg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89711968	89711968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	105	210	0	ENST00000371953.3:c.586C>T	p.His196Tyr	p.H196Y	ENST00000371953	NM_000314.4	196	Cac/Tac						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25469922	25469922	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0013696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	67	282	0	ENST00000264709.3:c.1120C>T	p.Gln374Ter	p.Q374*	ENST00000264709	NM_175629.2	374	Cag/Tag						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189587119	189587119	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	52	353	1	ENST00000264731.3:c.1136G>T	p.Arg379Leu	p.R379L	ENST00000264731	NM_003722.4	379	cGt/cTt						NEWRECORD																																																																									
PIM1	5292	MSKCC	GRCh37	6	37140934	37140934	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	110	401	0	ENST00000373509.5:c.770del	p.Gln257ArgfsTer17	p.Q257Rfs*17	ENST00000373509	NM_002648.3	257	cAg/cg						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151878215	151878215	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	28	362	0	ENST00000262189.6:c.6730A>T	p.Met2244Leu	p.M2244L	ENST00000262189	NM_170606.2	2244	Atg/Ttg						NEWRECORD																																																																									
NKX3-1	4824	MSKCC	GRCh37	8	23540179	23540179	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	16	51	0	ENST00000380871.4:c.224A>G	p.Gln75Arg	p.Q75R	ENST00000380871	NM_006167.3	75	cAg/cGg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0014526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1235	579	548	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	381	630	0	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55221722	55221722	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1215	248	410	1	ENST00000275493.2:c.766G>T	p.Asp256Tyr	p.D256Y	ENST00000275493	NM_005228.3	256	Gac/Tac						NEWRECORD																																																																									
CDK4	1019	MSKCC	GRCh37	12	58145050	58145050	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	57	546	0	ENST00000257904.6:c.294G>C	p.Gln98His	p.Q98H	ENST00000257904	NM_000075.3	98	caG/caC						NEWRECORD																																																																									
TP53BP1	7158	MSKCC	GRCh37	15	43769886	43769886	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	59	586	0	ENST00000382044.4:c.860A>G	p.Gln287Arg	p.Q287R	ENST00000382044	NM_001141980.1	287	cAa/cGa						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2976696	2976696	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	214	450	0	ENST00000396946.4:c.1316C>A	p.Ser439Tyr	p.S439Y	ENST00000396946	NM_032415.4	439	tCc/tAc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	11	165	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	36	300	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15276723	15276723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	25	470	0	ENST00000263388.2:c.5542C>T	p.Arg1848Cys	p.R1848C	ENST00000263388	NM_000435.2	1848	Cgt/Tgt						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114710672	114710672	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs184454375		P-0010966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	48	596	0	ENST00000543371.1:c.157G>A	p.Glu53Lys	p.E53K	ENST00000543371	NM_001198531.1	53	Gaa/Aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782177		P-0010238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	818	687	1	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112176171	112176171	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	17	550	0	ENST00000257430.4:c.4880A>C	p.Gln1627Pro	p.Q1627P	ENST00000257430	NM_000038.5	1627	cAa/cCa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112176309	112176309	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	40	396	0	ENST00000257430.4:c.5018A>G	p.Glu1673Gly	p.E1673G	ENST00000257430	NM_000038.5	1673	gAa/gGa						NEWRECORD																																																																									
FGFR2	2263	MSKCC	GRCh37	10	123239529	123239529	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	331	946	0	ENST00000358487.5:c.2308T>G	p.Leu770Val	p.L770V	ENST00000358487	NM_000141.4	770	Ttg/Gtg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108206575	108206575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138526014		P-0010238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	314	419	1	ENST00000278616.4:c.8155C>T	p.Arg2719Cys	p.R2719C	ENST00000278616	NM_000051.3	2719	Cgt/Tgt						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2138243	2138243	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	445	550	0	ENST00000219476.3:c.5176C>A	p.His1726Asn	p.H1726N	ENST00000219476	NM_000548.3	1726	Cat/Aat						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112176306	112176317	+	inframe_deletion	In_Frame_Del	DEL	GAGAAGGAGTTA	GAGAAGGAGTTA	-			P-0010238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	349	404	0	ENST00000257430.4:c.5018_5029del	p.Glu1673_Arg1676del	p.E1673_R1676del	ENST00000257430	NM_000038.5	1672	gGAGAAGGAGTTAga/gga						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49426628	49426645	+	inframe_deletion	In_Frame_Del	DEL	GCTGTTGCTGCTGTTGAA	GCTGTTGCTGCTGTTGAA	-			P-0010238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	95	411	0	ENST00000301067.7:c.11843_11860del	p.Leu3948_Gln3953del	p.L3948_Q3953del	ENST00000301067	NM_003482.3	3948	cTTCAACAGCAGCAACAGCag/cag						NEWRECORD																																																																									
DAXX	1616	MSKCC	GRCh37	6	33289151	33289151	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	316	340	0	ENST00000374542.5:c.401T>C	p.Leu134Pro	p.L134P	ENST00000374542	NM_001141970.1	134	cTc/cCc						NEWRECORD																																																																									
PRDM1	639	MSKCC	GRCh37	6	106554919	106554919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	26	299	0	ENST00000369096.4:c.2036G>A	p.Arg679His	p.R679H	ENST00000369096	NM_001198.3	679	cGt/cAt						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64574482	64574482	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0011464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	221	337	0	ENST00000337652.1:c.927+1G>A		p.X309_splice	ENST00000337652	NM_130803.2	309							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	151	524	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0012827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	140	538	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88678504	88678504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	162	545	0	ENST00000360948.2:c.1032G>T	p.Glu344Asp	p.E344D	ENST00000360948	NM_001012338.2	344	gaG/gaT						NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056425	26056427	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-	rs774779034		P-0014667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	62	246	0	ENST00000343677.2:c.230_232del	p.Asn77del	p.N77del	ENST00000343677	NM_005319.3	77	aACAgc/agc						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36206861	36206861	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	25	476	2	ENST00000300305.3:c.651del	p.Ser218AlafsTer19	p.S218Afs*19	ENST00000300305		217	ggG/gg						NEWRECORD																																																																									
CDC42	998	MSKCC	GRCh37	1	22417964	22417964	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	39	160	0	ENST00000344548.3:c.530T>A	p.Leu177Gln	p.L177Q	ENST00000344548	NM_001039802.1	177	cTg/cAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0014897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	334	705	3	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	162	230	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912580		P-0014897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	12	346	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	11998898	11998898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	86	254	0	ENST00000353533.5:c.400C>T	p.Arg134Trp	p.R134W	ENST00000353533	NM_003010.3	134	Cgg/Tgg						NEWRECORD																																																																									
FGF3	2248	MSKCC	GRCh37	11	69625252	69625252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	339	849	1	ENST00000334134.2:c.541C>T	p.Arg181Cys	p.R181C	ENST00000334134	NM_005247.2	181	Cgc/Tgc						NEWRECORD																																																																									
MLH1	4292	MSKCC	GRCh37	3	37081785	37081785	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0014897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	81	378	0	ENST00000231790.2:c.1667G>A	p.Ser556Asn	p.S556N	ENST00000231790	NM_000249.3	556	aGt/aAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0013717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	22	549	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692980	89692980	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	15	265	0	ENST00000371953.3:c.464A>G	p.Tyr155Cys	p.Y155C	ENST00000371953	NM_000314.4	155	tAt/tGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	292	635	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29556122	29556123	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0012908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	158	248	0	ENST00000358273.4:c.2492_2493del	p.Thr831ArgfsTer33	p.T831Rfs*33	ENST00000358273	NM_001042492.2	830	gAC/g						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157495164	157495164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	210	654	0	ENST00000346085.5:c.3048G>A	p.Met1016Ile	p.M1016I	ENST00000346085	NM_020732.3	1016	atG/atA						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67663355	67663355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	265	846	1	ENST00000264010.4:c.1756G>A	p.Glu586Lys	p.E586K	ENST00000264010	NM_006565.3	586	Gaa/Aaa						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39613837	39613837	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	293	754	0	ENST00000262039.4:c.1755G>T	p.Leu585Phe	p.L585F	ENST00000262039	NM_002647.2	585	ttG/ttT						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602341	10602341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	521	900	3	ENST00000171111.5:c.1237C>T	p.Arg413Cys	p.R413C	ENST00000171111	NM_203500.1	413	Cgt/Tgt						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11098450	11098451	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0012908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	440	740	0	ENST00000344626.4:c.969_970del	p.Pro324ArgfsTer62	p.P324Rfs*62	ENST00000344626	NM_003072.3	323	tCG/t						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0012043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	400	437	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	2095	398	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0012043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	1685	383	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc						NEWRECORD																																																																									
RAD54L	8438	MSKCC	GRCh37	1	46739346	46739346	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	226	453	0	ENST00000371975.4:c.1537A>C	p.Ser513Arg	p.S513R	ENST00000371975	NM_003579.3	513	Agt/Cgt						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243858916	243858916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	196	452	0	ENST00000263826.5:c.149C>T	p.Pro50Leu	p.P50L	ENST00000263826	NM_005465.4	50	cCc/cTc						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117677875	117677875	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs35269727		P-0012043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	174	438	0	ENST00000368508.3:c.4058A>C	p.Tyr1353Ser	p.Y1353S	ENST00000368508	NM_002944.2	1353	tAc/tCc						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49030402	49030402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	150	280	0	ENST00000267163.4:c.1877C>G	p.Ala626Gly	p.A626G	ENST00000267163	NM_000321.2	626	gCa/gGa						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061558	38061558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	79	143	0	ENST00000250448.2:c.431C>T	p.Ala144Val	p.A144V	ENST00000250448	NM_004496.3	144	gCg/gTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008473-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			226	185	455	1	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25972828	25972828	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008473-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			306	490	570	0	ENST00000435504.4:c.1597G>T	p.Val533Phe	p.V533F	ENST00000435504		533	Gtt/Ttt						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66280147	66280147	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008473-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			339	96	304	0	ENST00000273854.3:c.1542C>A	p.Ser514Arg	p.S514R	ENST00000273854	NM_004439.5	514	agC/agA						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32417943	32417943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008473-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			232	76	334	0	ENST00000332351.3:c.1109G>A	p.Arg370His	p.R370H	ENST00000332351	NM_024426.4	370	cGt/cAt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108160374	108160374	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008473-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			504	191	468	0	ENST00000278616.4:c.4282G>T	p.Glu1428Ter	p.E1428*	ENST00000278616	NM_000051.3	1428	Gaa/Taa						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12032477	12032477	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008473-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			173	93	314	0	ENST00000353533.5:c.913T>A	p.Phe305Ile	p.F305I	ENST00000353533	NM_003010.3	305	Ttt/Att						NEWRECORD																																																																									
SUZ12	23512	MSKCC	GRCh37	17	30293198	30293198	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008473-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			205	159	526	0	ENST00000322652.5:c.488G>C	p.Gly163Ala	p.G163A	ENST00000322652	NM_015355.2	163	gGt/gCt						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55155241	55155242	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	C			P-0008473-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			433	160	547	1	ENST00000257290.5:c.2840_2841delinsC	p.Ser947ThrfsTer24	p.S947Tfs*24	ENST00000257290	NM_006206.4	947	aGT/aC						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0012993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	122	484	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140481417	140481417	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913348		P-0012993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	108	759	0	ENST00000288602.6:c.1391G>T	p.Gly464Val	p.G464V	ENST00000288602	NM_004333.4	464	gGa/gTa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106364	27106364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	155	588	0	ENST00000324856.7:c.5975C>T	p.Ser1992Leu	p.S1992L	ENST00000324856	NM_006015.4	1992	tCa/tTa						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149505128	149505128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1602	191	855	0	ENST00000261799.4:c.1687G>A	p.Glu563Lys	p.E563K	ENST00000261799	NM_002609.3	563	Gag/Aag						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128843278	128843278	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41303402		P-0012993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	179	908	3	ENST00000249373.3:c.385G>A	p.Val129Ile	p.V129I	ENST00000249373	NM_005631.4	129	Gta/Ata						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135787805	135787811	+	frameshift_variant	Frame_Shift_Del	DEL	ACACTCG	ACACTCG	-			P-0012993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	160	663	0	ENST00000298552.3:c.771_777del	p.Ile257MetfsTer59	p.I257Mfs*59	ENST00000298552	NM_001162426.1	257	atCGAGTGT/at						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	67	636	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0013883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	51	569	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10600425	10600425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	125	855	0	ENST00000171111.5:c.1430del	p.Gly477AlafsTer23	p.G477Afs*23	ENST00000171111	NM_203500.1	477	gGc/gc						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8111503	8111513	+	frameshift_variant	Frame_Shift_Del	DEL	GGAATGCCAAT	GGAATGCCAAT	-			P-0011072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	128	579	0	ENST00000346208.3:c.991_1001del	p.Asn331GlyfsTer17	p.N331Gfs*17	ENST00000346208		330	aGGAATGCCAAT/a						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	167	540	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0012329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	222	622	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2984016	2984016	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	216	753	0	ENST00000396946.4:c.514G>C	p.Glu172Gln	p.E172Q	ENST00000396946	NM_032415.4	172	Gag/Cag						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49436867	49436867	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	236	790	0	ENST00000301067.7:c.5636C>G	p.Ser1879Cys	p.S1879C	ENST00000301067	NM_003482.3	1879	tCc/tGc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48581219	48581222	+	stop_gained	Nonsense_Mutation	ONP	GAAG	GAAG	AAAT			P-0012329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	113	685	1	ENST00000342988.3:c.523_526delinsAAAT	p.Glu175_Gly176delinsLysTer	p.E175_G176delinsK*	ENST00000342988	NM_005359.5	175	GAAGga/AAATga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	157	229	9	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106621	27106621	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	128	352	3	ENST00000324856.7:c.6232G>T	p.Glu2078Ter	p.E2078*	ENST00000324856	NM_006015.4	2078	Gag/Tag						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53230884	53230884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	23	210	0	ENST00000375401.3:c.1909C>T	p.Arg637Trp	p.R637W	ENST00000375401	NM_004187.3	637	Cgg/Tgg						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162688889	162688889	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1507	92	379	1	ENST00000367921.3:c.36C>G	p.Phe12Leu	p.F12L	ENST00000367921	NM_006182.2	12	ttC/ttG						NEWRECORD																																																																									
PIK3CB	5291	MSKCC	GRCh37	3	138456620	138456620	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	68	457	0	ENST00000289153.2:c.730T>C	p.Tyr244His	p.Y244H	ENST00000289153	NM_006219.2	244	Tat/Cat						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66509118	66509118	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	65	267	2	ENST00000273854.3:c.209T>G	p.Met70Arg	p.M70R	ENST00000273854	NM_004439.5	70	aTg/aGg						NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056544	26056544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	80	131	0	ENST00000343677.2:c.113C>T	p.Pro38Leu	p.P38L	ENST00000343677	NM_005319.3	38	cCc/cTc						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508727	106508727	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	129	275	0	ENST00000359195.3:c.721C>G	p.Pro241Ala	p.P241A	ENST00000359195	NM_002649.2	241	Ccc/Gcc						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128851988	128851988	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	123	453	8	ENST00000249373.3:c.2060C>A	p.Pro687Gln	p.P687Q	ENST00000249373	NM_005631.4	687	cCg/cAg						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98229584	98229584	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	66	381	0	ENST00000331920.6:c.2374G>C	p.Ala792Pro	p.A792P	ENST00000331920	NM_000264.3	792	Gct/Cct						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43606674	43606674	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	110	484	6	ENST00000355710.3:c.1283A>G	p.Glu428Gly	p.E428G	ENST00000355710	NM_020975.4	428	gAa/gGa						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43608351	43608351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	87	523	12	ENST00000355710.3:c.1699G>T	p.Asp567Tyr	p.D567Y	ENST00000355710	NM_020975.4	567	Gac/Tac						NEWRECORD																																																																									
FGFR2	2263	MSKCC	GRCh37	10	123298139	123298139	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	52	432	0	ENST00000358487.5:c.715T>C	p.Ser239Pro	p.S239P	ENST00000358487	NM_000141.4	239	Tcc/Ccc						NEWRECORD																																																																									
RPS6KB2	6199	MSKCC	GRCh37	11	67201900	67201900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	235	283	12	ENST00000312629.5:c.1100C>T	p.Pro367Leu	p.P367L	ENST00000312629	NM_003952.2	367	cCg/cTg						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57860032	57860032	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	151	577	0	ENST00000228682.2:c.772A>T	p.Ser258Cys	p.S258C	ENST00000228682	NM_005269.2	258	Agc/Tgc						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48881542	48881542	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	138	276	4	ENST00000267163.4:c.264G>C	p.Leu88Phe	p.L88F	ENST00000267163	NM_000321.2	88	ttG/ttC						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91333951	91333951	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	106	382	8	ENST00000355112.3:c.2896C>G	p.Leu966Val	p.L966V	ENST00000355112	NM_000057.2	966	Ctc/Gtc						NEWRECORD																																																																									
ALOX12B	242	MSKCC	GRCh37	17	7983248	7983248	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	204	399	4	ENST00000319144.4:c.766G>T	p.Glu256Ter	p.E256*	ENST00000319144	NM_001139.2	256	Gag/Tag						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39537699	39537699	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	83	347	0	ENST00000262039.4:c.233A>G	p.Tyr78Cys	p.Y78C	ENST00000262039	NM_002647.2	78	tAc/tGc						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602757	10602757	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	145	361	11	ENST00000171111.5:c.821A>G	p.His274Arg	p.H274R	ENST00000171111	NM_203500.1	274	cAc/cGc						NEWRECORD																																																																									
NCOA3	8202	MSKCC	GRCh37	20	46256707	46256707	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	148	664	8	ENST00000371998.3:c.763A>G	p.Thr255Ala	p.T255A	ENST00000371998		255	Aca/Gca						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41521913	41521913	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	208	473	0	ENST00000263253.7:c.775C>T	p.Gln259Ter	p.Q259*	ENST00000263253	NM_001429.3	259	Cag/Tag						NEWRECORD																																																																									
EIF1AX	1964	MSKCC	GRCh37	X	20152085	20152085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	139	206	0	ENST00000379607.5:c.245G>A	p.Arg82Gln	p.R82Q	ENST00000379607	NM_001412.3	82	cGa/cAa						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28908212	28908212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	157	424	3	ENST00000282397.4:c.2543del	p.Gly848AlafsTer13	p.G848Afs*13	ENST00000282397	NM_002019.4	848	gGc/gc						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16040683	16040683	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	54	430	1	ENST00000268712.3:c.1451del	p.Asn484MetfsTer31	p.N484Mfs*31	ENST00000268712	NM_006311.3	484	aAt/at						NEWRECORD																																																																									
MSH2	4436	MSKCC	GRCh37	2	47639574	47639613	+	frameshift_variant	Frame_Shift_Del	DEL	CTGATCACAGAAAGAAAAAAAGCTGACTTTTCCACAAAAG	CTGATCACAGAAAGAAAAAAAGCTGACTTTTCCACAAAAG	-			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	131	250	0	ENST00000233146.2:c.667_706del	p.Leu223ThrfsTer10	p.L223Tfs*10	ENST00000233146	NM_000251.2	223	CTGATCACAGAAAGAAAAAAAGCTGACTTTTCCACAAAAGac/ac						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0014692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	261	332	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578518	7578518	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs28934875		P-0014692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1215	490	1130	0	ENST00000269305.4:c.412G>C	p.Ala138Pro	p.A138P	ENST00000269305	NM_001126112.2	138	Gcc/Ccc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	104	743	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0015040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	99	842	0	ENST00000269305.4:c.686_687delGT	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116339864	116339864	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	118	618	0	ENST00000397752.3:c.726A>T	p.Arg242Ser	p.R242S	ENST00000397752	NM_000245.2	242	agA/agT						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	23	426	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0012645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	40	538	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151960117	151960117	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1152	64	545	0	ENST00000262189.6:c.1283A>G	p.Asn428Ser	p.N428S	ENST00000262189	NM_170606.2	428	aAt/aGt						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120506200	120506200	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	79	138	0	ENST00000256646.2:c.1912T>G	p.Ser638Ala	p.S638A	ENST00000256646	NM_024408.3	638	Tca/Gca						NEWRECORD																																																																									
CBFB	865	MSKCC	GRCh37	16	67063313	67063313	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0013047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	203	280	0	ENST00000412916.2:c.3G>A	p.Met1?	p.M1?	ENST00000412916		1	atG/atA						NEWRECORD																																																																									
RARA	5914	MSKCC	GRCh37	17	38512327	38512327	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	247	392	0	ENST00000254066.5:c.1238T>C	p.Met413Thr	p.M413T	ENST00000254066	NM_000964.3	413	aTg/aCg						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115711	8115711	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	259	490	0	ENST00000346208.3:c.1060delC	p.Leu354Ter	p.L354*	ENST00000346208		353	Ccc/cc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	243	288	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8376675	8376675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	178	728	0	ENST00000356435.5:c.4438G>A	p.Val1480Ile	p.V1480I	ENST00000356435		1480	Gtt/Att						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857935	9857935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	253	651	1	ENST00000330684.3:c.3466G>A	p.Glu1156Lys	p.E1156K	ENST00000330684	NM_001134407.1	1156	Gaa/Aaa						NEWRECORD																																																																									
HIST3H3	8290	MSKCC	GRCh37	1	228612783	228612783	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1582	262	1258	0	ENST00000366696.1:c.244G>T	p.Asp82Tyr	p.D82Y	ENST00000366696	NM_003493.2	82	Gac/Tac						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0012925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	118	402	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga						NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36935355	36935355	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	152	1209	0	ENST00000361632.4:c.1372G>T	p.Gly458Cys	p.G458C	ENST00000361632		458	Ggc/Tgc						NEWRECORD																																																																									
CDK4	1019	MSKCC	GRCh37	12	58143278	58143278	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	107	297	0	ENST00000257904.6:c.642C>G	p.Phe214Leu	p.F214L	ENST00000257904	NM_000075.3	214	ttC/ttG						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88476344	88476344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	30	485	0	ENST00000360948.2:c.1788G>C	p.Gln596His	p.Q596H	ENST00000360948	NM_001012338.2	596	caG/caC						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7125353	7125353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	47	825	0	ENST00000302850.5:c.3199G>A	p.Glu1067Lys	p.E1067K	ENST00000302850	NM_000208.2	1067	Gag/Aag						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117650588	117650589	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0012925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	82	1051	0	ENST00000368508.3:c.5269_5270delinsCT	p.Gly1757Leu	p.G1757L	ENST00000368508	NM_002944.2	1757	GGc/CTc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1148	644	616	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89259166	89259166	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	141	516	1	ENST00000336596.2:c.310C>T	p.Arg104Ter	p.R104*	ENST00000336596	NM_005233.5	104	Cga/Tga						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66242779	66242779	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0011412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	148	493	1	ENST00000273854.3:c.1793G>T	p.Cys598Phe	p.C598F	ENST00000273854	NM_004439.5	598	tGc/tTc						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38972002	38972002	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1560	659	819	0	ENST00000357387.3:c.949T>C	p.Cys317Arg	p.C317R	ENST00000357387	NM_152756.3	317	Tgc/Cgc						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133219215	133219215	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	90	589	0	ENST00000320574.5:c.4829C>A	p.Pro1610His	p.P1610H	ENST00000320574	NM_006231.2	1610	cCt/cAt						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91293066	91293066	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	98	466	0	ENST00000355112.3:c.568A>G	p.Lys190Glu	p.K190E	ENST00000355112	NM_000057.2	190	Aag/Gag						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221316	1221317	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0011412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	233	610	0	ENST00000326873.7:c.839_840delinsT	p.Pro280LeufsTer7	p.P280Lfs*7	ENST00000326873	NM_000455.4	280	cCC/cT						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	112	411	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0011527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	34	158	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	148	493	1	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101904860	101904860	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	71	471	0	ENST00000374994.4:c.848A>G	p.His283Arg	p.H283R	ENST00000374994	NM_004612.2	283	cAt/cGt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	92	506	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0012978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	108	544	4	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0013872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	240	488	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1072	23	741	1	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47044901	47044901	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	95	584	0	ENST00000329236.7:c.1993G>T	p.Glu665Ter	p.E665*	ENST00000329236	NM_001204466.1	665	Gag/Tag						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133759697	133759697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	44	318	0	ENST00000318560.5:c.2020C>T	p.Arg674Trp	p.R674W	ENST00000318560	NM_005157.4	674	Cgg/Tgg						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88476383	88476383	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	50	422	0	ENST00000360948.2:c.1749G>T	p.Lys583Asn	p.K583N	ENST00000360948	NM_001012338.2	583	aaG/aaT						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152163835	152163835	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	70	612	0	ENST00000206249.3:c.556G>C	p.Ala186Pro	p.A186P	ENST00000206249	NM_000125.3	186	Gca/Cca						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8338963	8338963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	107	609	1	ENST00000356435.5:c.5338C>T	p.Pro1780Ser	p.P1780S	ENST00000356435		1780	Cca/Tca						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8484202	8484203	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0013872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	101	682	0	ENST00000356435.5:c.3329_3330delinsAG	p.Thr1110Lys	p.T1110K	ENST00000356435		1110	aCC/aAG						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	120	222	0				ENST00000310581	NM_198253.2								NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0012032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	180	268	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	116	187	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc						NEWRECORD																																																																									
MITF	4286	MSKCC	GRCh37	3	70008548	70008548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	98	172	0	ENST00000352241.4:c.1138C>T	p.Arg380Trp	p.R380W	ENST00000352241	NM_198159.2	380	Cgg/Tgg						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66863125	66863125	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs139524801		P-0012032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	332	355	0	ENST00000374690.3:c.1644G>T	p.Leu548Phe	p.L548F	ENST00000374690	NM_000044.3	548	ttG/ttT						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47035903	47035903	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	323	258	1	ENST00000329236.7:c.352del	p.Leu118SerfsTer71	p.L118Sfs*71	ENST00000329236	NM_001204466.1	117	tCc/tc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174471	112174475	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAC	AAAAC	-			P-0012032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	67	192	0	ENST00000257430.4:c.3183_3187del	p.Gln1062Ter	p.Q1062*	ENST00000257430	NM_000038.5	1060	atAAAACaa/ataa						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220471	1220475	+	frameshift_variant	Frame_Shift_Del	DEL	CACCC	CACCC	-			P-0014492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	278	678	0	ENST00000326873.7:c.564_568del	p.Thr189GlnfsTer75	p.T189Qfs*75	ENST00000326873	NM_000455.4	188	ggCACCCtc/ggtc						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16256793	16256793	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	137	549	0	ENST00000375759.3:c.4058T>C	p.Val1353Ala	p.V1353A	ENST00000375759	NM_015001.2	1353	gTg/gCg						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215674254	215674254	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	318	597	0	ENST00000260947.4:c.40A>G	p.Ile14Val	p.I14V	ENST00000260947	NM_000465.2	14	Atc/Gtc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0013103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	150	769	1	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115118811	115118811	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	142	782	1	ENST00000257566.3:c.530A>T	p.Asp177Val	p.D177V	ENST00000257566	NM_016569.3	177	gAc/gTc						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110435004	110435004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	92	520	2	ENST00000375856.3:c.3397G>A	p.Ala1133Thr	p.A1133T	ENST00000375856	NM_003749.2	1133	Gcc/Acc						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72991341	72991341	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1121	261	1111	0	ENST00000268489.5:c.2704A>G	p.Met902Val	p.M902V	ENST00000268489	NM_006885.3	902	Atg/Gtg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40735447	40735447	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2026	134	864	0	ENST00000373198.4:c.3426G>T	p.Arg1142Ser	p.R1142S	ENST00000373198	NM_133170.3	1142	agG/agT						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66905935	66905935	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1218564193		P-0013103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	483	533	1	ENST00000374690.3:c.1852C>T	p.Arg618Trp	p.R618W	ENST00000374690	NM_000044.3	618	Cgg/Tgg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174998	112174999	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0013103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	305	451	0	ENST00000257430.4:c.3709_3710del	p.Gln1237GlufsTer2	p.Q1237Efs*2	ENST00000257430	NM_000038.5	1236	gCA/g						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63412503	63412503	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	560	517	0	ENST00000330258.3:c.664delC	p.Gln222LysfsTer60	p.Q222Kfs*60	ENST00000330258	NM_152424.3	222	Caa/aa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577510	7577511	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0013103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	351	655	0	ENST00000269305.4:c.770_771delTG	p.Leu257ArgfsTer6	p.L257Rfs*6	ENST00000269305	NM_001126112.2	257	cTG/c						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579508	7579508	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	471	498	0	ENST00000269305.4:c.179delC	p.Pro60GlnfsTer63	p.P60Qfs*63	ENST00000269305	NM_001126112.2	60	cCa/ca						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18691184	18691191	+	frameshift_variant	Frame_Shift_Del	DEL	TGCTGTCG	TGCTGTCG	-			P-0010129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	85	528	1	ENST00000266497.5:c.3299_3306del	p.Cys1100LeufsTer2	p.C1100Lfs*2	ENST00000266497		1099	TGCTGTCGt/t						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	31	437	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0014383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	30	544	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48581211	48581211	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	29	436	0	ENST00000342988.3:c.515T>A	p.Leu172Ter	p.L172*	ENST00000342988	NM_005359.5	172	tTg/tAg						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105239426	105239426	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	21	486	0	ENST00000349310.3:c.961C>A	p.Leu321Met	p.L321M	ENST00000349310	NM_001014432.1	321	Ctg/Atg						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72821254	72821254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	12	513	1	ENST00000268489.5:c.10921G>A	p.Val3641Ile	p.V3641I	ENST00000268489	NM_006885.3	3641	Gtt/Att						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149441368	149441368	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	11	623	0	ENST00000286301.3:c.1671G>T	p.Glu557Asp	p.E557D	ENST00000286301	NM_005211.3	557	gaG/gaT						NEWRECORD																																																																									
HIST1H3C	8352	MSKCC	GRCh37	6	26045884	26045884	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	14	327	0	ENST00000540144.1:c.246C>A	p.Asp82Glu	p.D82E	ENST00000540144	NM_003531.2	82	gaC/gaA						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971174	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCGCCGTGGAGCAGCAGCAG	CCGCGCCGTGGAGCAGCAGCAG	-			P-0014383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	18	302	0	ENST00000304494.5:c.184_205del	p.Leu62SerfsTer77	p.L62Sfs*77	ENST00000304494	NM_000077.4	62	CTGCTGCTGCTCCACGGCGCGGag/ag						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453132	140453132	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	47	404	1	ENST00000288602.6:c.1803A>T	p.Lys601Asn	p.K601N	ENST00000288602	NM_004333.4	601	aaA/aaT						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44949985	44949985	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	39	301	0	ENST00000377967.4:c.3754G>C	p.Ala1252Pro	p.A1252P	ENST00000377967	NM_021140.2	1252	Gca/Cca						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128843287	128843287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	50	761	0	ENST00000249373.3:c.394C>T	p.Pro132Ser	p.P132S	ENST00000249373	NM_005631.4	132	Ccc/Tcc						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53228172	53228172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	59	292	0	ENST00000375401.3:c.2230C>T	p.Arg744Trp	p.R744W	ENST00000375401	NM_004187.3	744	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0012810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	75	513	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs864622237		P-0012810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	203	442	0	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0012810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	92	250	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0012810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	233	466	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610307	10610307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	120	509	0	ENST00000171111.5:c.403C>T	p.Arg135Cys	p.R135C	ENST00000171111	NM_203500.1	135	Cgc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577027	7577027	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	260	614	0	ENST00000269305.4:c.911delC	p.Thr304IlefsTer41	p.T304Ifs*41	ENST00000269305	NM_001126112.2	304	aCt/at						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115112448	115112448	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	215	614	0	ENST00000257566.3:c.1292C>G	p.Ala431Gly	p.A431G	ENST00000257566	NM_016569.3	431	gCg/gGg						NEWRECORD																																																																									
MEF2B	100271849	MSKCC	GRCh37	19	19256829	19256829	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0014834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	115	518	0	ENST00000162023.5:c.884G>C	p.Gly295Ala	p.G295A	ENST00000162023		295	gGg/gCg						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32181943	32181943	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	105	680	0	ENST00000375023.3:c.2111G>C	p.Gly704Ala	p.G704A	ENST00000375023	NM_004557.3	704	gGg/gCg						NEWRECORD																																																																									
FGFR1	2260	MSKCC	GRCh37	8	38272410	38272410	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1326	100	371	1	ENST00000425967.3:c.1957C>T	p.Arg653Ter	p.R653*	ENST00000425967	NM_001174067.1	653	Cga/Tga						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47006791	47006791	+	5_prime_UTR_variant	5'UTR	SNP	C	C	A			P-0014834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	97	598	0	ENST00000329236.7:c.-90C>A		p.*30*	ENST00000329236	NM_001204466.1								NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	286	517	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	60	505	0	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604701	48604701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	57	451	0	ENST00000342988.3:c.1523G>A	p.Gly508Asp	p.G508D	ENST00000342988	NM_005359.5	508	gGc/gAc						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12044503	12044532	+	inframe_deletion	In_Frame_Del	DEL	GAGGTCGCATGCTATGTTTGTAAAATCCTG	GAGGTCGCATGCTATGTTTGTAAAATCCTG	-			P-0014943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	126	497	0	ENST00000353533.5:c.1128_1157del	p.Glu376_Leu385del	p.E376_L385del	ENST00000353533	NM_003010.3	376	GAGGTCGCATGCTATGTTTGTAAAATCCTG/-						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591844	48591844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	62	536	0	ENST00000342988.3:c.1007G>A	p.Gly336Glu	p.G336E	ENST00000342988	NM_005359.5	336	gGa/gAa						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41556727	41556727	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0014943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	63	449	2	ENST00000263253.7:c.3671+1G>A		p.X1224_splice	ENST00000263253	NM_001429.3	1224							NEWRECORD																																																																									
FOXP1	27086	MSKCC	GRCh37	3	71021763	71021763	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	116	412	0	ENST00000318789.4:c.1595C>A	p.Ala532Glu	p.A532E	ENST00000318789	NM_032682.5	532	gCa/gAa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936083	178936083	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	113	566	0	ENST00000263967.3:c.1625A>G	p.Glu542Gly	p.E542G	ENST00000263967	NM_006218.2	542	gAa/gGa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0012340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	42	296	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0012340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	127	604	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116601	112116601	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0012340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	39	305	0	ENST00000257430.4:c.645+1G>A		p.X215_splice	ENST00000257430	NM_000038.5	215							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	322	455	3	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0014772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	31	243	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575671	48575671	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	235	416	0	ENST00000342988.3:c.431C>G	p.Ser144Ter	p.S144*	ENST00000342988	NM_005359.5	144	tCa/tGa						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47044713	47044713	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	134	727	0	ENST00000329236.7:c.1879G>T	p.Glu627Ter	p.E627*	ENST00000329236	NM_001204466.1	627	Gag/Tag						NEWRECORD																																																																									
MDM4	4194	MSKCC	GRCh37	1	204512055	204512055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	73	245	0	ENST00000367182.3:c.655G>A	p.Asp219Asn	p.D219N	ENST00000367182	NM_001278516.1	219	Gat/Aat						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108201088	108201099	+	inframe_deletion	In_Frame_Del	DEL	CCGACTTTGTTC	CCGACTTTGTTC	-			P-0014772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	71	354	0	ENST00000278616.4:c.7457_7468del	p.Arg2486_Ser2489del	p.R2486_S2489del	ENST00000278616	NM_000051.3	2485	ttCCGACTTTGTTCc/ttc						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57865689	57865689	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	103	706	0	ENST00000228682.2:c.3166C>G	p.Pro1056Ala	p.P1056A	ENST00000228682	NM_005269.2	1056	Ccc/Gcc						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42794384	42794384	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0014772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	106	687	1	ENST00000575354.2:c.1465-1G>T		p.X489_splice	ENST00000575354	NM_015125.3	489							NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1271233	1271233	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0014772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	18	193	0	ENST00000310581.5:c.2468+1G>A		p.X823_splice	ENST00000310581	NM_198253.2	823							NEWRECORD																																																																									
DAXX	1616	MSKCC	GRCh37	6	33288194	33288194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	113	391	0	ENST00000374542.5:c.1214C>T	p.Ser405Phe	p.S405F	ENST00000374542	NM_001141970.1	405	tCt/tTt						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	26029159	26029159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	44	522	0	ENST00000435504.4:c.191C>T	p.Ser64Phe	p.S64F	ENST00000435504		64	tCc/tTc						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47139496	47139496	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	83	605	0	ENST00000409792.3:c.5091C>G	p.Ile1697Met	p.I1697M	ENST00000409792	NM_014159.6	1697	atC/atG						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	76	395	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88727521	88727521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	51	341	0	ENST00000360948.2:c.258G>T	p.Glu86Asp	p.E86D	ENST00000360948	NM_001012338.2	86	gaG/gaT						NEWRECORD																																																																									
PIK3R2	5296	MSKCC	GRCh37	19	18279958	18279958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	88	369	1	ENST00000222254.8:c.2041G>A	p.Glu681Lys	p.E681K	ENST00000222254	NM_005027.3	681	Gag/Aag						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11294274	11294274	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	108	425	0	ENST00000361445.4:c.2257A>T	p.Ser753Cys	p.S753C	ENST00000361445	NM_004958.3	753	Agt/Tgt						NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36945094	36945094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	70	629	1	ENST00000361632.4:c.4G>A	p.Ala2Thr	p.A2T	ENST00000361632		2	Gca/Aca						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29450494	29450494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	187	463	0	ENST00000389048.3:c.2860G>A	p.Asp954Asn	p.D954N	ENST00000389048	NM_004304.4	954	Gat/Aat						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55963857	55963857	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	99	529	0	ENST00000263923.4:c.2586C>G	p.Cys862Trp	p.C862W	ENST00000263923	NM_002253.2	862	tgC/tgG						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66233094	66233094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	49	378	0	ENST00000273854.3:c.1905G>T	p.Met635Ile	p.M635I	ENST00000273854	NM_004439.5	635	atG/atT						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112162900	112162900	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	78	450	0	ENST00000257430.4:c.1504G>T	p.Gly502Ter	p.G502*	ENST00000257430	NM_000038.5	502	Gga/Tga						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32178664	32178664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	144	385	2	ENST00000375023.3:c.2730C>A	p.Ser910Arg	p.S910R	ENST00000375023	NM_004557.3	910	agC/agA						NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	162394386	162394386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	114	412	0	ENST00000366898.1:c.682C>A	p.Leu228Met	p.L228M	ENST00000366898	NM_004562.2	228	Ctg/Atg						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8331710	8331710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	170	371	1	ENST00000356435.5:c.5406G>T	p.Gln1802His	p.Q1802H	ENST00000356435		1802	caG/caT						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70451483	70451483	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1083	253	519	1	ENST00000373644.4:c.6323A>T	p.Lys2108Ile	p.K2108I	ENST00000373644	NM_030625.2	2108	aAa/aTa						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115114216	115114216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	240	446	1	ENST00000257566.3:c.1001G>T	p.Gly334Val	p.G334V	ENST00000257566	NM_016569.3	334	gGg/gTg						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12028644	12028644	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	79	431	1	ENST00000353533.5:c.847G>C	p.Gly283Arg	p.G283R	ENST00000353533	NM_003010.3	283	Gga/Cga						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29559161	29559161	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	51	255	0	ENST00000358273.4:c.3268G>T	p.Gly1090Ter	p.G1090*	ENST00000358273	NM_001042492.2	1090	Gga/Tga						NEWRECORD																																																																									
CEBPA	1050	MSKCC	GRCh37	19	33793242	33793242	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	21	161	0	ENST00000498907.2:c.79A>C	p.Ser27Arg	p.S27R	ENST00000498907	NM_004364.3	27	Agc/Cgc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40790149	40790149	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	73	200	0	ENST00000373198.4:c.2582C>G	p.Thr861Ser	p.T861S	ENST00000373198	NM_133170.3	861	aCc/aGc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40944586	40944586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	81	226	0	ENST00000373198.4:c.1916C>T	p.Ala639Val	p.A639V	ENST00000373198	NM_133170.3	639	gCa/gTa						NEWRECORD																																																																									
CHEK2	11200	MSKCC	GRCh37	22	29091789	29091789	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	90	279	0	ENST00000328354.6:c.1168T>G	p.Tyr390Asp	p.Y390D	ENST00000328354	NM_007194.3	390	Tac/Gac						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39922141	39922141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1409	169	653	2	ENST00000378444.4:c.4031C>T	p.Ala1344Val	p.A1344V	ENST00000378444	NM_001123385.1	1344	gCc/gTc						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123171425	123171425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1287	119	525	0	ENST00000218089.9:c.337G>A	p.Ala113Thr	p.A113T	ENST00000218089	NM_001042749.1	113	Gca/Aca						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140482852	140482852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011465-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	83	546	0	ENST00000288602.6:c.1283C>T	p.Ser428Leu	p.S428L	ENST00000288602	NM_004333.4	428	tCa/tTa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	238	404	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70119789	70119789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1220	435	619	0	ENST00000245479.2:c.791G>C	p.Arg264Thr	p.R264T	ENST00000245479	NM_000346.3	264	aGa/aCa						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120462920	120462920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	255	462	1	ENST00000256646.2:c.5411C>T	p.Ser1804Leu	p.S1804L	ENST00000256646	NM_024408.3	1804	tCg/tTg						NEWRECORD																																																																									
TNFRSF14	8764	MSKCC	GRCh37	1	2489186	2489186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1330	173	682	0	ENST00000355716.4:c.91G>A	p.Gly31Arg	p.G31R	ENST00000355716	NM_003820.2	31	Gga/Aga						NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36941097	36941097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1906	215	917	0	ENST00000361632.4:c.242G>A	p.Gly81Glu	p.G81E	ENST00000361632		81	gGg/gAg						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89462410	89462410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1280	99	381	0	ENST00000336596.2:c.1882G>A	p.Gly628Arg	p.G628R	ENST00000336596	NM_005233.5	628	Gga/Aga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578469	7578474	+	inframe_deletion	In_Frame_Del	DEL	CCGGGC	CCGGGC	-			P-0010973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	215	469	0	ENST00000269305.4:c.456_461del	p.Pro153_Gly154del	p.P153_G154del	ENST00000269305	NM_001126112.2	152	ccGCCCGGc/ccc						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29667589	29667589	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	418	693	0	ENST00000358273.4:c.6989del	p.Leu2330CysfsTer16	p.L2330Cfs*16	ENST00000358273	NM_001042492.2	2330	Ttg/tg						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971123	21971123	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	124	262	0	ENST00000304494.5:c.235del	p.Thr79ProfsTer67	p.T79Pfs*67	ENST00000304494	NM_000077.4	79	Acc/cc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0010014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	165	393	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	47	382	0	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175822	112175823	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0010014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	106	362	0	ENST00000257430.4:c.4532_4533del	p.Leu1511ArgfsTer2	p.L1511Rfs*2	ENST00000257430	NM_000038.5	1511	CTc/c						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0012393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	1242	557	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	61	319	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31023408	31023408	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	105	470	0	ENST00000375687.4:c.2893C>T	p.Arg965Ter	p.R965*	ENST00000375687	NM_015338.5	965	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	473	345	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	168	276	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70355083	70355083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	641	358	0	ENST00000374080.3:c.5005G>A	p.Asp1669Asn	p.D1669N	ENST00000374080		1669	Gat/Aat						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175143	112175143	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	116	195	0	ENST00000257430.4:c.3852A>T	p.Glu1284Asp	p.E1284D	ENST00000257430	NM_000038.5	1284	gaA/gaT						NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056263	26056263	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1489	212	476	0	ENST00000343677.2:c.394G>C	p.Val132Leu	p.V132L	ENST00000343677	NM_005319.3	132	Gtt/Ctt						NEWRECORD																																																																									
CDKN2B	1030	MSKCC	GRCh37	9	22006224	22006224	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	143	163	0	ENST00000276925.6:c.179del	p.Arg60ProfsTer105	p.R60Pfs*105	ENST00000276925	NM_004936.3	60	cGc/cc						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114710609	114710609	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2087	394	959	0	ENST00000543371.1:c.94del	p.Ser32ProfsTer10	p.S32Pfs*10	ENST00000543371	NM_001198531.1	32	Tcc/cc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0014610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	451	600	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49427090	49427090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	250	497	0	ENST00000301067.7:c.11398G>A	p.Gly3800Ser	p.G3800S	ENST00000301067	NM_003482.3	3800	Ggc/Agc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577017	7577017	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0014610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	369	691	1	ENST00000269305.4:c.919+2T>A		p.X307_splice	ENST00000269305	NM_001126112.2	307							NEWRECORD																																																																									
XPO1	7514	MSKCC	GRCh37	2	61717854	61717855	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0014610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	200	665	0	ENST00000401558.2:c.1944_1945delinsTT	p.Val649Leu	p.V649L	ENST00000401558	NM_003400.3	648	acAGta/acTTta						NEWRECORD																																																																									
HIST1H3B	8358	MSKCC	GRCh37	6	26031954	26031954	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	80	291	0	ENST00000244661.2:c.335C>G	p.Ala112Gly	p.A112G	ENST00000244661	NM_003537.3	112	gCc/gGc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	39	337	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	161969890	161969890	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	40	347	0	ENST00000366898.1:c.1079G>T	p.Cys360Phe	p.C360F	ENST00000366898	NM_004562.2	360	tGt/tTt						NEWRECORD																																																																									
MRE11A	4361	MSKCC	GRCh37	11	94204809	94204809	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	32	271	0	ENST00000323929.3:c.776A>G	p.Gln259Arg	p.Q259R	ENST00000323929	NM_005591.3	259	cAg/cGg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207092	1207092	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	108	441	0	ENST00000326873.7:c.180C>A	p.Tyr60Ter	p.Y60*	ENST00000326873	NM_000455.4	60	taC/taA						NEWRECORD																																																																									
FGFR4	2264	MSKCC	GRCh37	5	176520273	176520273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	32	617	0	ENST00000292408.4:c.1192C>T	p.Arg398Trp	p.R398W	ENST00000292408	NM_213647.1	398	Cgg/Tgg						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412023	116412023	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	102	722	0	ENST00000397752.3:c.3008A>T	p.Tyr1003Phe	p.Y1003F	ENST00000397752	NM_000245.2	1003	tAc/tTc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	142	328	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150005117	150005117	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56348064		P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	53	369	0	ENST00000253339.5:c.1108C>T	p.Arg370Trp	p.R370W	ENST00000253339		370	Cgg/Tgg						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149495510	149495510	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	93	575	0	ENST00000261799.4:c.3138-1G>T		p.X1046_splice	ENST00000261799	NM_002609.3	1046							NEWRECORD																																																																									
NBN	4683	MSKCC	GRCh37	8	90995024	90995024	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	61	354	1	ENST00000265433.3:c.97A>T	p.Ile33Phe	p.I33F	ENST00000265433	NM_002485.4	33	Att/Ttt						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139399273	139399273	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	47	414	0	ENST00000277541.6:c.4870G>T	p.Glu1624Ter	p.E1624*	ENST00000277541	NM_017617.3	1624	Gag/Tag						NEWRECORD																																																																									
MYOD1	4654	MSKCC	GRCh37	11	17742873	17742873	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	81	304	0	ENST00000250003.3:c.781A>T	p.Thr261Ser	p.T261S	ENST00000250003	NM_002478.4	261	Acc/Tcc						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118307610	118307610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	77	200	0	ENST00000534358.1:c.383G>T	p.Arg128Leu	p.R128L	ENST00000534358	NM_005933.3	128	cGg/cTg						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28895610	28895610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	147	443	0	ENST00000282397.4:c.3164G>A	p.Arg1055Lys	p.R1055K	ENST00000282397	NM_002019.4	1055	aGa/aAa						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28895675	28895675	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	148	484	1	ENST00000282397.4:c.3099C>A	p.Asn1033Lys	p.N1033K	ENST00000282397	NM_002019.4	1033	aaC/aaA						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3820681	3820681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	75	429	0	ENST00000262367.5:c.2770G>T	p.Ala924Ser	p.A924S	ENST00000262367	NM_004380.2	924	Gcc/Tcc						NEWRECORD																																																																									
CCNE1	898	MSKCC	GRCh37	19	30313358	30313358	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	58	476	1	ENST00000262643.3:c.958C>T	p.Gln320Ter	p.Q320*	ENST00000262643	NM_001238.2	320	Cag/Tag						NEWRECORD																																																																									
ERCC2	2068	MSKCC	GRCh37	19	45858020	45858020	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	461	471	0	ENST00000391945.4:c.1633A>G	p.Met545Val	p.M545V	ENST00000391945	NM_000400.3	545	Atg/Gtg						NEWRECORD																																																																									
CHEK2	11200	MSKCC	GRCh37	22	29095926	29095926	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	92	397	0	ENST00000328354.6:c.909-1G>T		p.X303_splice	ENST00000328354	NM_007194.3	303							NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47028847	47028847	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	84	275	0	ENST00000329236.7:c.151C>T	p.Gln51Ter	p.Q51*	ENST00000329236	NM_001204466.1	51	Cag/Tag						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23641022	23641022	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	15	505	0	ENST00000261584.4:c.2453T>C	p.Phe818Ser	p.F818S	ENST00000261584	NM_024675.3	818	tTt/tCt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0012779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	365	565	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	216	551	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	416168	416168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1179	86	623	0	ENST00000399788.2:c.4018G>A	p.Asp1340Asn	p.D1340N	ENST00000399788	NM_001042603.1	1340	Gat/Aat						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29661910	29661910	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	265	374	0	ENST00000358273.4:c.5867T>G	p.Leu1956Arg	p.L1956R	ENST00000358273	NM_001042492.2	1956	cTa/cGa						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29556454	29556457	+	frameshift_variant	Frame_Shift_Del	DEL	ATCA	ATCA	-			P-0012779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	54	264	0	ENST00000358273.4:c.2821_2824del	p.Ile941AlafsTer12	p.I941Afs*12	ENST00000358273	NM_001042492.2	941	ATCAgc/gc						NEWRECORD																																																																									
NCOA3	8202	MSKCC	GRCh37	20	46271054	46271057	+	missense_variant	Missense_Mutation	ONP	CTTC	CTTC	TTTT			P-0012779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1107	81	757	0	ENST00000371998.3:c.3178_3181delinsTTTT	p.Leu1060_Leu1061delinsPhePhe	p.L1060_L1061delinsFF	ENST00000371998		1060	CTTCtc/TTTTtc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0012555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	221	373	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0011437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1474	55	918	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061216	38061230	+	inframe_deletion	In_Frame_Del	DEL	CAGCCGTTCTCGAAC	CAGCCGTTCTCGAAC	-			P-0011437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	53	524	0	ENST00000250448.2:c.759_773del	p.Met253_Cys258delinsIle	p.M253_C258delinsI	ENST00000250448	NM_004496.3	253	atGTTCGAGAACGGCTGc/atc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0012222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	43	343	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120480627	120480627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	51	341	0	ENST00000256646.2:c.3190G>T	p.Val1064Leu	p.V1064L	ENST00000256646	NM_024408.3	1064	Gtg/Ttg						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12028662	12028662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	135	609	1	ENST00000353533.5:c.865G>A	p.Asp289Asn	p.D289N	ENST00000353533	NM_003010.3	289	Gat/Aat						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70349704	70349704	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0012222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	91	696	1	ENST00000374080.3:c.3866A>T	p.Gln1289Leu	p.Q1289L	ENST00000374080		1289	cAg/cTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0003198-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			461	49	404	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180039583	180039583	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75614493		P-0003198-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			709	47	462	1	ENST00000261937.6:c.3460G>A	p.Gly1154Arg	p.G1154R	ENST00000261937	NM_182925.4	1154	Gga/Aga						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50468158	50468158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003198-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			413	24	314	0	ENST00000331340.3:c.1393G>A	p.Glu465Lys	p.E465K	ENST00000331340	NM_006060.4	465	Gaa/Aaa						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70426988	70426988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003198-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			480	27	324	0	ENST00000373644.4:c.4648G>T	p.Asp1550Tyr	p.D1550Y	ENST00000373644	NM_030625.2	1550	Gac/Tac						NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103514889	103514889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003198-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			550	59	321	0	ENST00000355739.4:c.1390G>A	p.Gly464Arg	p.G464R	ENST00000355739	NM_000123.3	464	Ggg/Agg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0014317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	116	232	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17951135	17951135	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	221	659	0	ENST00000458235.1:c.1158C>G	p.Ile386Met	p.I386M	ENST00000458235	NM_000215.3	386	atC/atG						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0014317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	266	654	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc						NEWRECORD																																																																									
SDHB	6390	MSKCC	GRCh37	1	17355174	17355174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	239	671	2	ENST00000375499.3:c.344G>A	p.Arg115Gln	p.R115Q	ENST00000375499	NM_003000.2	115	cGa/cAa						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8097742	8097743	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0014317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	104	602	1	ENST00000346208.3:c.124_125delinsAA	p.Pro42Lys	p.P42K	ENST00000346208		42	CCg/AAg						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12016564	12016564	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	122	304	0	ENST00000353533.5:c.700A>T	p.Asn234Tyr	p.N234Y	ENST00000353533	NM_003010.3	234	Aat/Tat						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55153603	55153603	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	163	403	0	ENST00000257290.5:c.2569C>G	p.Leu857Val	p.L857V	ENST00000257290	NM_006206.4	857	Ctg/Gtg						NEWRECORD																																																																									
FAM175A	84142	MSKCC	GRCh37	4	84393388	84393388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	37	347	1	ENST00000321945.7:c.269C>T	p.Ser90Leu	p.S90L	ENST00000321945	NM_139076.2	90	tCa/tTa						NEWRECORD																																																																									
RAD21	5885	MSKCC	GRCh37	8	117859844	117859844	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	145	323	0	ENST00000297338.2:c.1791C>G	p.Phe597Leu	p.F597L	ENST00000297338	NM_006265.2	597	ttC/ttG						NEWRECORD																																																																									
RXRA	6256	MSKCC	GRCh37	9	137313610	137313610	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	67	725	0	ENST00000481739.1:c.869C>G	p.Ser290Ter	p.S290*	ENST00000481739	NM_002957.4	290	tCa/tGa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	164	797	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	184	625	2	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa						NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56782284	56782284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	83	500	2	ENST00000308159.5:c.125G>A	p.Arg42His	p.R42H	ENST00000308159	NM_014669.4	42	cGc/cAc						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41739843	41739843	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	183	440	1	ENST00000242208.4:c.130C>A	p.Pro44Thr	p.P44T	ENST00000242208	NM_002192.2	44	Cca/Aca						NEWRECORD																																																																									
JUN	3725	MSKCC	GRCh37	1	59248145	59248145	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	31	102	0	ENST00000371222.2:c.598C>T	p.Gln200Ter	p.Q200*	ENST00000371222	NM_002228.3	200	Caa/Taa						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32449541	32449541	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	84	843	0	ENST00000332351.3:c.833C>A	p.Thr278Asn	p.T278N	ENST00000332351	NM_024426.4	278	aCc/aAc						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100962530	100962530	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	44	478	0	ENST00000325455.5:c.1867C>G	p.Arg623Gly	p.R623G	ENST00000325455	NM_001202474.3	623	Cgc/Ggc						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108216485	108216485	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	29	207	0	ENST00000278616.4:c.8434T>A	p.Ser2812Thr	p.S2812T	ENST00000278616	NM_000051.3	2812	Tct/Act						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118392772	118392772	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	142	549	2	ENST00000534358.1:c.11804G>T	p.Arg3935Leu	p.R3935L	ENST00000534358	NM_005933.3	3935	cGt/cTt						NEWRECORD																																																																									
FOXO1	2308	MSKCC	GRCh37	13	41134966	41134966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	69	256	0	ENST00000379561.5:c.662G>T	p.Ser221Ile	p.S221I	ENST00000379561	NM_002015.3	221	aGc/aTc						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81972434	81972434	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	57	472	0	ENST00000359376.3:c.3227T>G	p.Leu1076Arg	p.L1076R	ENST00000359376	NM_002661.3	1076	cTt/cGt						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70120127	70120127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	60	192	0	ENST00000245479.2:c.1129C>A	p.Pro377Thr	p.P377T	ENST00000245479	NM_000346.3	377	Cca/Aca						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7168103	7168103	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	55	473	0	ENST00000302850.5:c.1486G>A	p.Glu496Lys	p.E496K	ENST00000302850	NM_000208.2	496	Gaa/Aaa						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29543668	29543668	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	160	677	0	ENST00000389048.3:c.1495C>A	p.Pro499Thr	p.P499T	ENST00000389048	NM_004304.4	499	Cct/Act						NEWRECORD																																																																									
EPAS1	2034	MSKCC	GRCh37	2	46607816	46607816	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	212	795	1	ENST00000263734.3:c.2009del	p.Pro670LeufsTer26	p.P670Lfs*26	ENST00000263734	NM_001430.4	669	Ccc/cc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40911166	40911166	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	92	468	1	ENST00000373198.4:c.2140-1G>A		p.X714_splice	ENST00000373198	NM_133170.3	714							NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47164507	47164507	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	114	343	0	ENST00000409792.3:c.1619G>T	p.Arg540Leu	p.R540L	ENST00000409792	NM_014159.6	540	cGa/cTa						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89478259	89478259	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	55	391	0	ENST00000336596.2:c.2078A>C	p.Lys693Thr	p.K693T	ENST00000336596	NM_005233.5	693	aAg/aCg						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66217206	66217207	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	68	444	2	ENST00000273854.3:c.2408_2409delinsAA	p.Ala803Glu	p.A803E	ENST00000273854	NM_004439.5	803	gCC/gAA						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56111513	56111513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	43	121	0	ENST00000399503.3:c.113C>T	p.Ala38Val	p.A38V	ENST00000399503	NM_005921.1	38	gCg/gTg						NEWRECORD																																																																									
MSH3	4437	MSKCC	GRCh37	5	80064719	80064719	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	166	492	0	ENST00000265081.6:c.2150A>T	p.Asp717Val	p.D717V	ENST00000265081	NM_002439.4	717	gAt/gTt						NEWRECORD																																																																									
GTF2I	2969	MSKCC	GRCh37	7	74105393	74105393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	148	543	0	ENST00000324896.4:c.188G>A	p.Arg63His	p.R63H	ENST00000324896	NM_032999.3	63	cGt/cAt						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128829102	128829102	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	44	87	0	ENST00000249373.3:c.110C>A	p.Thr37Asn	p.T37N	ENST00000249373	NM_005631.4	37	aCc/aAc						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128829138	128829138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	52	143	0	ENST00000249373.3:c.146G>A	p.Arg49Lys	p.R49K	ENST00000249373	NM_005631.4	49	aGg/aAg						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151841865	151841865	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	62	343	0	ENST00000262189.6:c.14276C>A	p.Ser4759Ter	p.S4759*	ENST00000262189	NM_170606.2	4759	tCa/tAa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151873552	151873552	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	72	469	0	ENST00000262189.6:c.8986G>C	p.Gly2996Arg	p.G2996R	ENST00000262189	NM_170606.2	2996	Ggt/Cgt						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139399282	139399282	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	176	856	0	ENST00000277541.6:c.4861G>T	p.Gly1621Cys	p.G1621C	ENST00000277541	NM_017617.3	1621	Ggc/Tgc						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44732959	44732959	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	109	297	0	ENST00000377967.4:c.161+1G>A		p.X54_splice	ENST00000377967	NM_021140.2	54							NEWRECORD																																																																									
HIST1H3I	8354	MSKCC	GRCh37	6	27840053	27840053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013825-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	131	956	3	ENST00000328488.2:c.41G>A	p.Gly14Asp	p.G14D	ENST00000328488	NM_003533.2	14	gGc/gAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0012321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	35	474	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	55	847	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178927977	178927988	+	inframe_deletion	In_Frame_Del	DEL	CACTGTCCATTG	CACTGTCCATTG	-			P-0012321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	40	288	0	ENST00000263967.3:c.1255_1266del	p.His419_Leu422del	p.H419_L422del	ENST00000263967	NM_006218.2	419	CACTGTCCATTG/-						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89685234	89685268	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TAATGGTGGCTTTTTGTTTGTTTGTTTTGTTTTAA	TAATGGTGGCTTTTTGTTTGTTTGTTTTGTTTTAA	-			P-0012321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	38	157	0	ENST00000371953.3:c.165-36_165-2del		p.X55_splice	ENST00000371953	NM_000314.4	55							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	570	636	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55599252	55599252	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	276	539	0	ENST00000288135.5:c.2378T>C	p.Leu793Ser	p.L793S	ENST00000288135	NM_000222.2	793	tTg/tCg						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142297507	142297507	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1955	149	650	0	ENST00000350721.4:c.40G>T	p.Ala14Ser	p.A14S	ENST00000350721	NM_001184.3	14	Gcc/Tcc						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55968641	55968641	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs139644107		P-0013265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1015	208	742	0	ENST00000263923.4:c.2022G>C	p.Glu674Asp	p.E674D	ENST00000263923	NM_002253.2	674	gaG/gaC						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151848029	151848029	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	170	612	0	ENST00000262189.6:c.12730A>C	p.Ile4244Leu	p.I4244L	ENST00000262189	NM_170606.2	4244	Att/Ctt						NEWRECORD																																																																									
NKX2-1	7080	MSKCC	GRCh37	14	36986592	36986592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	90	305	0	ENST00000354822.5:c.1097G>A	p.Ser366Asn	p.S366N	ENST00000354822	NM_001079668.2	366	aGc/aAc						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16021210	16021210	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0013265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	194	761	0	ENST00000268712.3:c.2047A>T	p.Lys683Ter	p.K683*	ENST00000268712	NM_006311.3	683	Aaa/Taa						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134851802	134851802	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1319	156	652	0	ENST00000398015.3:c.1209del	p.Phe404LeufsTer44	p.F404Lfs*44	ENST00000398015	NM_004441.4	403	aCc/ac						NEWRECORD																																																																									
PIK3CB	5291	MSKCC	GRCh37	3	138413744	138413749	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTGAAG	CTGAAG	-			P-0013265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1309	116	416	0	ENST00000289153.2:c.1771_1776del	p.Leu591_Gln592del	p.L591_Q592del	ENST00000289153	NM_006219.2	591	CTTCAG/-						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55981509	55981509	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	174	515	0	ENST00000263923.4:c.428A>G	p.Asn143Ser	p.N143S	ENST00000263923	NM_002253.2	143	aAc/aGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	346	567	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg						NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209113296	209113296	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs73070954		P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	167	511	2	ENST00000345146.2:c.211G>A	p.Val71Ile	p.V71I	ENST00000345146	NM_005896.2	71	Gtc/Atc						NEWRECORD																																																																									
RAF1	5894	MSKCC	GRCh37	3	12633229	12633229	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	291	437	0	ENST00000251849.4:c.1171A>T	p.Arg391Trp	p.R391W	ENST00000251849	NM_002880.3	391	Agg/Tgg						NEWRECORD																																																																									
ERCC3	2071	MSKCC	GRCh37	2	128038173	128038173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	277	460	0	ENST00000285398.2:c.1377G>T	p.Gln459His	p.Q459H	ENST00000285398	NM_000122.1	459	caG/caT						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47058687	47058687	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	313	444	3	ENST00000409792.3:c.7591G>T	p.Glu2531Ter	p.E2531*	ENST00000409792	NM_014159.6	2531	Gag/Tag						NEWRECORD																																																																									
GATA2	2624	MSKCC	GRCh37	3	128200073	128200073	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1204	152	595	0	ENST00000341105.2:c.1232C>A	p.Ala411Glu	p.A411E	ENST00000341105	NM_032638.4	411	gCg/gAg						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180053165	180053165	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	231	579	0	ENST00000261937.6:c.1204T>A	p.Trp402Arg	p.W402R	ENST00000261937	NM_182925.4	402	Tgg/Agg						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145741937	145741937	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	78	357	0	ENST00000428558.2:c.566G>C	p.Gly189Ala	p.G189A	ENST00000428558	NM_004260.3	189	gGc/gCc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8518346	8518346	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	95	206	0	ENST00000356435.5:c.1045G>C	p.Glu349Gln	p.E349Q	ENST00000356435		349	Gag/Cag						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98229650	98229650	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	71	305	2	ENST00000331920.6:c.2308C>T	p.Arg770Ter	p.R770*	ENST00000331920	NM_000264.3	770	Cga/Tga						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49445443	49445443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1095	127	490	0	ENST00000301067.7:c.2023C>T	p.Pro675Ser	p.P675S	ENST00000301067	NM_003482.3	675	Cct/Tct						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49448762	49448762	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	136	404	0	ENST00000301067.7:c.97C>G	p.Leu33Val	p.L33V	ENST00000301067	NM_003482.3	33	Ctg/Gtg						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28626755	28626755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	320	428	3	ENST00000241453.7:c.541G>A	p.Ala181Thr	p.A181T	ENST00000241453	NM_004119.2	181	Gcc/Acc						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28631600	28631600	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	83	319	0	ENST00000241453.7:c.369-1G>A		p.X123_splice	ENST00000241453	NM_004119.2	123							NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3778560	3778560	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	257	602	1	ENST00000262367.5:c.6488G>T	p.Gly2163Val	p.G2163V	ENST00000262367	NM_004380.2	2163	gGc/gTc						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72829454	72829454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1186	129	811	2	ENST00000268489.5:c.7127C>T	p.Thr2376Met	p.T2376M	ENST00000268489	NM_006885.3	2376	aCg/aTg						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89836284	89836284	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	188	519	0	ENST00000389301.3:c.2465T>A	p.Leu822Gln	p.L822Q	ENST00000389301	NM_000135.2	822	cTg/cAg						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29652932	29652932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	355	469	1	ENST00000358273.4:c.4930G>T	p.Asp1644Tyr	p.D1644Y	ENST00000358273	NM_001042492.2	1644	Gac/Tac						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151853131	151853829	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGTTTTGGTAACTGGAAAAGCAAAAACACAAAACCATAAATACATTCAGTCAATATTGATAAATGGGTAGAACTTTACAATTCTATTGCCATTTCACAATACACAACTGGCAGAGGCACATTTCTCCGAGGTGTGAAATTTGGAGGCTATAATCATACCTTCATGGCTCACTAACACTCCGGCTTTTCCAGCAAGTTCTTCAGTTGTTGCAAAACCATTGGCCATCTTCTGACAAGCCATAGGAGGTGGTGTAGGAGGAAGAGAGGCAGGGGGTGTTGGAGGATTACTTAAATTATTCTGCTGCAGGAGACCAAAAAATTTAAATTATATGCTACTGAGCGAATATGCAATGACCTTGCTAAAACGTAGTTCTGTGAATTTTTTGCACATAGAAGCAAGGCTACAGAAATGTAATCAAGATGTATCTTGCACACCAAGAAAACAATACCTACAAGGCCAGGAGGCTTCTTAGTGGAACAGATACTCGTGATTTTATGGACATACCAACTTGCTTACTTTACCCAGCTTGACTACTTAAGCTCTGAAATTAAGAAGCTAATTTCCTTTCTACCTGATTTTATTTATGCAATTCTTCAAGTTTCGTGGTTATAGCTAGTGAAGGATAACTTTAAAATGCAATCAAGAAATTGCAAAATATTATCAAAATATCCTTTAAGTTCTCATTAAGATATGCCCTA	GAGTTTTGGTAACTGGAAAAGCAAAAACACAAAACCATAAATACATTCAGTCAATATTGATAAATGGGTAGAACTTTACAATTCTATTGCCATTTCACAATACACAACTGGCAGAGGCACATTTCTCCGAGGTGTGAAATTTGGAGGCTATAATCATACCTTCATGGCTCACTAACACTCCGGCTTTTCCAGCAAGTTCTTCAGTTGTTGCAAAACCATTGGCCATCTTCTGACAAGCCATAGGAGGTGGTGTAGGAGGAAGAGAGGCAGGGGGTGTTGGAGGATTACTTAAATTATTCTGCTGCAGGAGACCAAAAAATTTAAATTATATGCTACTGAGCGAATATGCAATGACCTTGCTAAAACGTAGTTCTGTGAATTTTTTGCACATAGAAGCAAGGCTACAGAAATGTAATCAAGATGTATCTTGCACACCAAGAAAACAATACCTACAAGGCCAGGAGGCTTCTTAGTGGAACAGATACTCGTGATTTTATGGACATACCAACTTGCTTACTTTACCCAGCTTGACTACTTAAGCTCTGAAATTAAGAAGCTAATTTCCTTTCTACCTGATTTTATTTATGCAATTCTTCAAGTTTCGTGGTTATAGCTAGTGAAGGATAACTTTAAAATGCAATCAAGAAATTGCAAAATATTATCAAAATATCCTTTAAGTTCTCATTAAGATATGCCCTA	-			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	40	208	0	ENST00000262189.6:c.11671-394_11828del		p.X3891_splice	ENST00000262189	NM_170606.2	3891							NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31021158	31021159	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	166	511	0	ENST00000375687.4:c.1162_1163del	p.Val388ProfsTer21	p.V388Pfs*21	ENST00000375687	NM_015338.5	386	tTG/t						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	130	561	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602737	10602737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	165	850	0	ENST00000171111.5:c.841C>A	p.Leu281Met	p.L281M	ENST00000171111	NM_203500.1	281	Ctg/Atg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221954	1221954	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	217	867	0	ENST00000326873.7:c.869T>G	p.Leu290Arg	p.L290R	ENST00000326873	NM_000455.4	290	cTt/cGt						NEWRECORD																																																																									
CARM1	10498	MSKCC	GRCh37	19	10982436	10982436	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	14	55	0	ENST00000327064.4:c.58C>A	p.Pro20Thr	p.P20T	ENST00000327064	NM_199141.1	20	Ccg/Acg						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66213898	66213898	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	57	454	0	ENST00000273854.3:c.2532G>T	p.Trp844Cys	p.W844C	ENST00000273854	NM_004439.5	844	tgG/tgT						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55372299	55372299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	106	873	0	ENST00000297316.4:c.989C>A	p.Pro330His	p.P330H	ENST00000297316	NM_022454.3	330	cCc/cAc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151833988	151833988	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	60	302	0	ENST00000262189.6:c.14665G>C	p.Asp4889His	p.D4889H	ENST00000262189	NM_170606.2	4889	Gac/Cac						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41572904	41572904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	106	410	0	ENST00000263253.7:c.5189C>T	p.Ser1730Phe	p.S1730F	ENST00000263253	NM_001429.3	1730	tCt/tTt						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41573335	41573335	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	116	565	0	ENST00000263253.7:c.5620C>T	p.Gln1874Ter	p.Q1874*	ENST00000263253	NM_001429.3	1874	Cag/Tag						NEWRECORD																																																																									
SUZ12	23512	MSKCC	GRCh37	17	30264387	30264387	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	50	288	0	ENST00000322652.5:c.123del	p.Gly42AlafsTer30	p.G42Afs*30	ENST00000322652	NM_015355.2	41	tCc/tc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0011250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	100	253	2	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
DCUN1D1	54165	MSKCC	GRCh37	3	182665074	182665074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	85	603	0	ENST00000292782.4:c.652G>C	p.Asp218His	p.D218H	ENST00000292782	NM_020640.2	218	Gac/Cac						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32190509	32190509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	57	598	2	ENST00000375023.3:c.230G>C	p.Gly77Ala	p.G77A	ENST00000375023	NM_004557.3	77	gGa/gCa						NEWRECORD																																																																									
YES1	7525	MSKCC	GRCh37	18	756592	756592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	49	520	0	ENST00000314574.4:c.236C>T	p.Ser79Leu	p.S79L	ENST00000314574	NM_005433.3	79	tCa/tTa						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31023646	31023646	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	107	813	0	ENST00000375687.4:c.3131C>G	p.Ser1044Cys	p.S1044C	ENST00000375687	NM_015338.5	1044	tCc/tGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	15	460	0	ENST00000269305.4:c.455C>A	p.Pro152Gln	p.P152Q	ENST00000269305	NM_001126112.2	152	cCg/cAg						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162748510	162748510	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	53	294	0	ENST00000367921.3:c.2424A>T	p.Gln808His	p.Q808H	ENST00000367921	NM_006182.2	808	caA/caT						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212530177	212530177	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	171	486	2	ENST00000342788.4:c.1742C>G	p.Ser581Cys	p.S581C	ENST00000342788	NM_005235.2	581	tCt/tGt						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67569229	67569229	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	196	549	0	ENST00000274335.5:c.346C>G	p.Pro116Ala	p.P116A	ENST00000274335		116	Ccg/Gcg						NEWRECORD																																																																									
HIST1H3J	8356	MSKCC	GRCh37	6	27858518	27858518	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	185	953	0	ENST00000359303.2:c.53G>C	p.Arg18Pro	p.R18P	ENST00000359303	NM_003535.2	18	cGg/cCg						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110435765	110435765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	83	108	0	ENST00000375856.3:c.2636G>A	p.Gly879Asp	p.G879D	ENST00000375856	NM_003749.2	879	gGc/gAc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	263	527	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0014849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	141	758	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0014849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	90	375	0	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88476387	88476387	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202056599		P-0014849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	64	567	1	ENST00000360948.2:c.1745G>A	p.Arg582Gln	p.R582Q	ENST00000360948	NM_001012338.2	582	cGg/cAg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	67	416	0	ENST00000342988.3:c.1157G>C	p.Gly386Ala	p.G386A	ENST00000342988	NM_005359.5	386	gGt/gCt						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151932987	151932987	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014011-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			167	37	55	0	ENST00000262189.6:c.2684G>C	p.Arg895Thr	p.R895T	ENST00000262189	NM_170606.2	895	aGa/aCa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55241678	55241681	+	protein_altering_variant	In_Frame_Del	DEL	AAAC	AAAC	G			P-0014011-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			789	176	480	0	ENST00000275493.2:c.2126_2129delinsG	p.Glu709_Thr710delinsGly	p.E709_T710delinsG	ENST00000275493	NM_005228.3	709	gAAACt/gGt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	298	456	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98231100	98231100	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28936404		P-0013887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	42	313	0	ENST00000331920.6:c.2183C>T	p.Thr728Met	p.T728M	ENST00000331920	NM_000264.3	728	aCg/aTg						NEWRECORD																																																																									
TCF3	6929	MSKCC	GRCh37	19	1622330	1622330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	40	876	0	ENST00000344749.5:c.634G>A	p.Ala212Thr	p.A212T	ENST00000344749	NM_001136139.2	212	Gcc/Acc						NEWRECORD																																																																									
FGFR3	2261	MSKCC	GRCh37	4	1801204	1801205	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0013887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	1134	467	3	ENST00000260795.2:c.333_334delinsTT	p.Gln111_Arg112delinsHisTrp	p.Q111_R112delinsHW	ENST00000260795		111	caGCgg/caTTgg						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73346365	73346365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	146	582	0	ENST00000377767.4:c.1435G>T	p.Asp479Tyr	p.D479Y	ENST00000377767	NM_014953.3	479	Gac/Tac						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91312725	91312725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	239	722	0	ENST00000355112.3:c.2464C>T	p.Pro822Ser	p.P822S	ENST00000355112	NM_000057.2	822	Cct/Tct						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73346355	73346355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	138	599	0	ENST00000377767.4:c.1445G>A	p.Gly482Glu	p.G482E	ENST00000377767	NM_014953.3	482	gGa/gAa						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3832864	3832864	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	79	632	2	ENST00000262367.5:c.1394A>T	p.Gln465Leu	p.Q465L	ENST00000262367	NM_004380.2	465	cAg/cTg						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41249283	41249283	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	133	594	0	ENST00000357654.3:c.571G>T	p.Val191Phe	p.V191F	ENST00000357654	NM_007294.3	191	Gtt/Ttt						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106158079	106158079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	153	614	0	ENST00000380013.4:c.2980C>T	p.His994Tyr	p.H994Y	ENST00000380013	NM_001127208.2	994	Cac/Tac						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180053149	180053150	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0013900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	59	720	1	ENST00000261937.6:c.1219_1220delinsAT	p.Gly407Ile	p.G407I	ENST00000261937	NM_182925.4	407	GGc/ATc						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2969663	2969663	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	80	784	0	ENST00000396946.4:c.1616G>T	p.Cys539Phe	p.C539F	ENST00000396946	NM_032415.4	539	tGc/tTc						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140481486	140481486	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1539	298	1095	0	ENST00000288602.6:c.1322T>G	p.Leu441Arg	p.L441R	ENST00000288602	NM_004333.4	441	cTt/cGt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398282	25398284	+	missense_variant	Missense_Mutation	ONP	CAC	CAC	AAT			P-0013900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	143	616	1	ENST00000256078.4:c.35_37delinsATT	p.Gly12_Gly13delinsAspCys	p.G12_G13delinsDC	ENST00000256078	NM_033360.2	12	gGTGgc/gATTgc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0012436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	90	453	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0012436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	88	401	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72829227	72829227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1375	163	862	2	ENST00000268489.5:c.7354C>T	p.Pro2452Ser	p.P2452S	ENST00000268489	NM_006885.3	2452	Cca/Tca						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575055	48575055	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0012436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	47	415	0	ENST00000342988.3:c.250-1G>A		p.X84_splice	ENST00000342988	NM_005359.5	84							NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46242729	46242729	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	31	308	0	ENST00000334344.6:c.1691del	p.Ser564Ter	p.S564*	ENST00000334344	NM_152641.2	564	tCa/ta						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0014489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	186	711	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56181857	56181857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	120	399	0	ENST00000399503.3:c.4081C>T	p.His1361Tyr	p.H1361Y	ENST00000399503	NM_005921.1	1361	Cat/Tat						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0013554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	64	435	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0013554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	58	369	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857680	9857680	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1303700994		P-0013554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	35	417	0	ENST00000330684.3:c.3721C>T	p.Arg1241Trp	p.R1241W	ENST00000330684	NM_001134407.1	1241	Cgg/Tgg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221273	1221273	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	81	660	0	ENST00000326873.7:c.797del	p.Asn266ThrfsTer21	p.N266Tfs*21	ENST00000326873	NM_000455.4	266	Aac/ac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0013009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	146	471	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108143283	108143283	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0013009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	325	460	0	ENST00000278616.4:c.3102T>G	p.Tyr1034Ter	p.Y1034*	ENST00000278616	NM_000051.3	1034	taT/taG						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15971433	15971433	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0013009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	123	490	0	ENST00000268712.3:c.4516A>G	p.Thr1506Ala	p.T1506A	ENST00000268712	NM_006311.3	1506	Aca/Gca						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575148	48575148	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0013009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	152	512	0	ENST00000342988.3:c.342T>G	p.Tyr114Ter	p.Y114*	ENST00000342988	NM_005359.5	114	taT/taG						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57470729	57470729	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	104	344	0	ENST00000371085.3:c.202T>G	p.Phe68Val	p.F68V	ENST00000371085	NM_000516.4	68	Ttt/Gtt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0012076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1315	983	494	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49047507	49047507	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0012076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	58	404	0	ENST00000267163.4:c.2501C>G	p.Ser834Ter	p.S834*	ENST00000267163	NM_000321.2	834	tCa/tGa						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81888102	81888102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1142	92	752	0	ENST00000359376.3:c.247G>A	p.Glu83Lys	p.E83K	ENST00000359376	NM_002661.3	83	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0012076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	125	424	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc						NEWRECORD																																																																									
ICOSLG	23308	MSKCC	GRCh37	21	45649965	45649966	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0012076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	42	285	0	ENST00000407780.3:c.869_870delinsTT	p.Trp290Phe	p.W290F	ENST00000407780	NM_001283052.1	290	tGG/tTT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0014127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	250	487	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971187	21971197	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGCTGCCCA	GGCGCTGCCCA	-			P-0014127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	62	156	0	ENST00000304494.5:c.161_171del	p.Met54ThrfsTer62	p.M54Tfs*62	ENST00000304494	NM_000077.4	54	aTGGGCAGCGCC/a						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242469	55242475	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAG	TTAAGAG	C			P-0014127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	188	503	0	ENST00000275493.2:c.2239_2245delinsC	p.Leu747_Glu749delinsGln	p.L747_E749delinsQ	ENST00000275493	NM_005228.3	747	TTAAGAGaa/Caa						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108175528	108175528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	93	513	0	ENST00000278616.4:c.5623C>T	p.Arg1875Ter	p.R1875*	ENST00000278616	NM_000051.3	1875	Cga/Tga						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108201096	108201096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	44	427	1	ENST00000278616.4:c.7463G>A	p.Cys2488Tyr	p.C2488Y	ENST00000278616	NM_000051.3	2488	tGt/tAt						NEWRECORD																																																																									
RYBP	23429	MSKCC	GRCh37	3	72495684	72495684	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	38	465	0	ENST00000477973.2:c.386T>C	p.Cys130Arg	p.C130R	ENST00000477973	NM_012234.5	130	Tgc/Cgc						NEWRECORD																																																																									
MYOD1	4654	MSKCC	GRCh37	11	17741349	17741349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	79	397	0	ENST00000250003.3:c.20C>T	p.Pro7Leu	p.P7L	ENST00000250003	NM_002478.4	7	cCg/cTg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0011301-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			916	130	428	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11132437	11132437	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs281875227		P-0011301-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			748	114	727	2	ENST00000344626.4:c.2653C>T	p.Arg885Cys	p.R885C	ENST00000344626	NM_003072.3	885	Cgc/Tgc						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602647	10602647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011301-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			691	149	622	0	ENST00000171111.5:c.931C>T	p.His311Tyr	p.H311Y	ENST00000171111	NM_203500.1	311	Cac/Tac						NEWRECORD																																																																									
PIK3CD	5293	MSKCC	GRCh37	1	9776087	9776087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011301-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			524	69	483	0	ENST00000377346.4:c.551G>A	p.Arg184Gln	p.R184Q	ENST00000377346	NM_005026.3	184	cGg/cAg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49431479	49431479	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012969-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	115	477	0	ENST00000301067.7:c.9660G>C	p.Leu3220Phe	p.L3220F	ENST00000301067	NM_003482.3	3220	ttG/ttC						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576837	7577056	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCCTTGGTCTCCTCCACCGCTTCTTGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGGGCAGCTCGTGGTGAGGC	TCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCCTTGGTCTCCTCCACCGCTTCTTGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGGGCAGCTCGTGGTGAGGC	-			P-0012969-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	79	338	0	ENST00000269305.4:c.882_993+16del		p.X294_splice	ENST00000269305	NM_001126112.2	294							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	730	508	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11552822		P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	89	192	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	696	344	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120458225	120458225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	87	399	0	ENST00000256646.2:c.7120C>T	p.His2374Tyr	p.H2374Y	ENST00000256646	NM_024408.3	2374	Cat/Tat						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18793388	18793388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	806	454	0	ENST00000266497.5:c.4085G>A	p.Ser1362Asn	p.S1362N	ENST00000266497		1362	aGt/aAt						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30675877	30675877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1457	1245	771	1	ENST00000376406.3:c.2479G>A	p.Glu827Lys	p.E827K	ENST00000376406	NM_014641.2	827	Gag/Aag						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11204726	11204726	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1512	126	537	0	ENST00000361445.4:c.4851G>C	p.Gln1617His	p.Q1617H	ENST00000361445	NM_004958.3	1617	caG/caC						NEWRECORD																																																																									
NEGR1	257194	MSKCC	GRCh37	1	72058578	72058578	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1866	161	739	0	ENST00000357731.5:c.862A>T	p.Thr288Ser	p.T288S	ENST00000357731	NM_173808.2	288	Aca/Tca						NEWRECORD																																																																									
XPO1	7514	MSKCC	GRCh37	2	61727000	61727000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	188	353	0	ENST00000401558.2:c.438G>T	p.Trp146Cys	p.W146C	ENST00000401558	NM_003400.3	146	tgG/tgT						NEWRECORD																																																																									
PMS1	5378	MSKCC	GRCh37	2	190728706	190728706	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	261	317	0	ENST00000441310.2:c.2094G>T	p.Gln698His	p.Q698H	ENST00000441310	NM_000534.4	698	caG/caT						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212652803	212652803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	412	513	0	ENST00000342788.4:c.503G>T	p.Arg168Leu	p.R168L	ENST00000342788	NM_005235.2	168	cGg/cTg						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212989481	212989481	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	346	428	0	ENST00000342788.4:c.230T>A	p.Leu77Gln	p.L77Q	ENST00000342788	NM_005235.2	77	cTg/cAg						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55127327	55127327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	336	459	1	ENST00000257290.5:c.115G>T	p.Val39Leu	p.V39L	ENST00000257290	NM_006206.4	39	Gtg/Ttg						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55980311	55980311	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	364	463	0	ENST00000263923.4:c.780G>A	p.Trp260Ter	p.W260*	ENST00000263923	NM_002253.2	260	tgG/tgA						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249402	153249402	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	278	419	0	ENST00000281708.4:c.1376G>T	p.Gly459Val	p.G459V	ENST00000281708	NM_033632.3	459	gGg/gTg						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187630675	187630675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	406	495	0	ENST00000441802.2:c.307G>A	p.Gly103Arg	p.G103R	ENST00000441802	NM_005245.3	103	Gga/Aga						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1294210	1294210	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	291	369	0	ENST00000310581.5:c.791G>C	p.Gly264Ala	p.G264A	ENST00000310581	NM_198253.2	264	gGa/gCa						NEWRECORD																																																																									
HIST1H2BD	3017	MSKCC	GRCh37	6	26158486	26158486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1064	114	293	0	ENST00000289316.2:c.89G>T	p.Arg30Leu	p.R30L	ENST00000289316	NM_138720.2	30	cGc/cTc						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30672275	30672275	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1203	1118	647	0	ENST00000376406.3:c.4685G>C	p.Arg1562Thr	p.R1562T	ENST00000376406	NM_014641.2	1562	aGg/aCg						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30675744	30675744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1562	1247	833	0	ENST00000376406.3:c.2612G>A	p.Arg871Lys	p.R871K	ENST00000376406	NM_014641.2	871	aGa/aAa						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30680755	30680755	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			987	853	505	0	ENST00000376406.3:c.964C>G	p.Gln322Glu	p.Q322E	ENST00000376406	NM_014641.2	322	Cag/Gag						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30680976	30680976	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	818	493	0	ENST00000376406.3:c.743C>G	p.Ser248Cys	p.S248C	ENST00000376406	NM_014641.2	248	tCt/tGt						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30681759	30681759	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1396	377	433	0	ENST00000376406.3:c.338A>C	p.His113Pro	p.H113P	ENST00000376406	NM_014641.2	113	cAc/cCc						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2962323	2962323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1266	508	630	0	ENST00000396946.4:c.2214G>T	p.Trp738Cys	p.W738C	ENST00000396946	NM_032415.4	738	tgG/tgT						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140494194	140494194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1079	452	540	0	ENST00000288602.6:c.1054G>T	p.Asp352Tyr	p.D352Y	ENST00000288602	NM_004333.4	352	Gat/Tat						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8492898	8492898	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	198	433	0	ENST00000356435.5:c.2431C>G	p.Arg811Gly	p.R811G	ENST00000356435		811	Cgc/Ggc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8518054	8518054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	304	480	0	ENST00000356435.5:c.1337G>A	p.Gly446Glu	p.G446E	ENST00000356435		446	gGa/gAa						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70451365	70451365	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	278	634	0	ENST00000373644.4:c.6205G>C	p.Glu2069Gln	p.E2069Q	ENST00000373644	NM_030625.2	2069	Gag/Cag						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89725060	89725060	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	375	309	0	ENST00000371953.3:c.1043C>G	p.Thr348Arg	p.T348R	ENST00000371953	NM_000314.4	348	aCa/aGa						NEWRECORD																																																																									
IGF2	3481	MSKCC	GRCh37	11	2154356	2154356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	413	620	1	ENST00000434045.2:c.572G>C	p.Arg191Pro	p.R191P	ENST00000434045	NM_001127598.1	191	cGt/cCt						NEWRECORD																																																																									
MYOD1	4654	MSKCC	GRCh37	11	17741416	17741416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	454	558	0	ENST00000250003.3:c.87C>A	p.Phe29Leu	p.F29L	ENST00000250003	NM_002478.4	29	ttC/ttA						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100922222	100922222	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	892	708	0	ENST00000325455.5:c.2290G>T	p.Gly764Ter	p.G764*	ENST00000325455	NM_001202474.3	764	Gga/Tga						NEWRECORD																																																																									
CBL	867	MSKCC	GRCh37	11	119149241	119149241	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1204	228	530	0	ENST00000264033.4:c.1249C>G	p.Pro417Ala	p.P417A	ENST00000264033	NM_005188.3	417	Cct/Gct						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49434408	49434408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	85	381	0	ENST00000301067.7:c.7145C>T	p.Pro2382Leu	p.P2382L	ENST00000301067	NM_003482.3	2382	cCa/cTa						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28623675	28623675	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	371	350	0	ENST00000241453.7:c.883-1G>T		p.X295_splice	ENST00000241453	NM_004119.2	295							NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73346364	73346364	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	134	322	0	ENST00000377767.4:c.1436A>T	p.Asp479Val	p.D479V	ENST00000377767	NM_014953.3	479	gAc/gTc						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110435247	110435247	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	164	133	0	ENST00000375856.3:c.3154A>T	p.Thr1052Ser	p.T1052S	ENST00000375856	NM_003749.2	1052	Acc/Tcc						NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45007768	45007768	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	637	396	0	ENST00000558401.1:c.215C>G	p.Ser72Ter	p.S72*	ENST00000558401	NM_004048.2	72	tCa/tGa						NEWRECORD																																																																									
TRAF7	84231	MSKCC	GRCh37	16	2222279	2222279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	524	581	0	ENST00000326181.6:c.563G>A	p.Cys188Tyr	p.C188Y	ENST00000326181	NM_032271.2	188	tGc/tAc						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3789621	3789621	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	387	524	0	ENST00000262367.5:c.4238A>C	p.His1413Pro	p.H1413P	ENST00000262367	NM_004380.2	1413	cAc/cCc						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29679418	29679418	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	528	393	0	ENST00000358273.4:c.7601C>G	p.Thr2534Ser	p.T2534S	ENST00000358273	NM_001042492.2	2534	aCt/aGt						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15349598	15349598	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	703	341	0	ENST00000263377.2:c.3976G>C	p.Glu1326Gln	p.E1326Q	ENST00000263377	NM_058243.2	1326	Gag/Cag						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42790961	42790961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	1403	639	1	ENST00000575354.2:c.106C>T	p.Pro36Ser	p.P36S	ENST00000575354	NM_015125.3	36	Cct/Tct						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9546782	9546782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	436	275	0	ENST00000353224.5:c.1240C>A	p.Pro414Thr	p.P414T	ENST00000353224	NM_177990.2	414	Ccc/Acc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106917	27106917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	843	347	0	ENST00000324856.7:c.6532del	p.Asp2178ThrfsTer22	p.D2178Tfs*22	ENST00000324856	NM_006015.4	2176	caG/ca						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8733839	8733840	+	missense_variant	Missense_Mutation	DNP	AC	AC	CT			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	154	267	0	ENST00000356435.5:c.4_5delinsAG	p.Val2Arg	p.V2R	ENST00000356435		2	GTg/AGg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	41	711	0	ENST00000326873.7:c.650del	p.Pro217ArgfsTer70	p.P217Rfs*70	ENST00000326873	NM_000455.4	216	tCc/tc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380279	25380279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	92	627	0	ENST00000256078.4:c.179G>T	p.Gly60Val	p.G60V	ENST00000256078	NM_033360.2	60	gGt/gTt						NEWRECORD																																																																									
MAP2K1	5604	MSKCC	GRCh37	15	66729154	66729154	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	59	562	0	ENST00000307102.5:c.362G>C	p.Cys121Ser	p.C121S	ENST00000307102	NM_002755.3	121	tGc/tCc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27088723	27088723	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	63	652	1	ENST00000324856.7:c.2332G>T	p.Gly778Ter	p.G778*	ENST00000324856	NM_006015.4	778	Gga/Tga						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602921	10602923	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0013863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	64	525	0	ENST00000171111.5:c.655_657del	p.Glu219del	p.E219del	ENST00000171111	NM_203500.1	219	GAG/-						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30691882	30691882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	92	373	0	ENST00000359013.4:c.459G>T	p.Lys153Asn	p.K153N	ENST00000359013	NM_001024847.2	153	aaG/aaT						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66356275	66356275	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	59	585	0	ENST00000273854.3:c.1222T>C	p.Cys408Arg	p.C408R	ENST00000273854	NM_004439.5	408	Tgt/Cgt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	58	373	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2223311	2223311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1133	136	720	0	ENST00000398665.3:c.3422C>T	p.Thr1141Ile	p.T1141I	ENST00000398665	NM_032482.2	1141	aCa/aTa						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63850653	63850653	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	35	364	0	ENST00000279873.7:c.1433del	p.Leu478Ter	p.L478*	ENST00000279873	NM_032199.2	477	acT/ac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	217	552	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0015074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	364	806	4	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	44	314	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67592099	67592099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	76	297	0	ENST00000274335.5:c.1915C>T	p.Arg639Ter	p.R639*	ENST00000274335		639	Cga/Tga						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41545145	41545145	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0015074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	333	706	1	ENST00000263253.7:c.2345T>A	p.Leu782Ter	p.L782*	ENST00000263253	NM_001429.3	782	tTg/tAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112170646	112170646	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0015074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	63	299	2	ENST00000257430.4:c.1744-2A>G		p.X582_splice	ENST00000257430	NM_000038.5	582							NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101894839	101894839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	122	256	1	ENST00000374994.4:c.392C>A	p.Ala131Asp	p.A131D	ENST00000374994	NM_004612.2	131	gCt/gAt						NEWRECORD																																																																									
TNFRSF14	8764	MSKCC	GRCh37	1	2491283	2491283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	118	652	0	ENST00000355716.4:c.326G>A	p.Arg109Gln	p.R109Q	ENST00000355716	NM_003820.2	109	cGg/cAg						NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36937066	36937066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	74	530	0	ENST00000361632.4:c.1253G>A	p.Arg418His	p.R418H	ENST00000361632		418	cGt/cAt						NEWRECORD																																																																									
PDPK1	5170	MSKCC	GRCh37	16	2636698	2636698	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	85	623	0	ENST00000342085.4:c.1147T>A	p.Phe383Ile	p.F383I	ENST00000342085	NM_002613.4	383	Ttt/Att						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0015055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	215	699	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45395652	45395652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	45	569	0	ENST00000262160.6:c.482G>T	p.Cys161Phe	p.C161F	ENST00000262160	NM_005901.5	161	tGt/tTt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0015055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	53	505	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc						NEWRECORD																																																																									
AXL	558	MSKCC	GRCh37	19	41727926	41727926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	76	691	1	ENST00000301178.4:c.551C>T	p.Pro184Leu	p.P184L	ENST00000301178	NM_021913.4	184	cCa/cTa						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44513327	44513327	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755118626		P-0015055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	123	853	0	ENST00000291552.4:c.608G>A	p.Arg203His	p.R203H	ENST00000291552	NM_006758.2	203	cGt/cAt						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0015055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	39	698	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010807-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	92	377	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64577316	64577316	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010807-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	122	403	0	ENST00000337652.1:c.266T>G	p.Leu89Arg	p.L89R	ENST00000337652	NM_130803.2	89	cTc/cGc						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68844245	68844245	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0010807-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	45	298	0	ENST00000261769.5:c.832+1G>T		p.X278_splice	ENST00000261769	NM_004360.3	278							NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0011450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	77	215	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0011450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	24	134	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47139573	47139573	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0011450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	78	222	0	ENST00000409792.3:c.5016-2A>G		p.X1672_splice	ENST00000409792	NM_014159.6	1672							NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47147512	47147512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	102	302	0	ENST00000409792.3:c.4814A>G	p.Tyr1605Cys	p.Y1605C	ENST00000409792	NM_014159.6	1605	tAt/tGt						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53240738	53240738	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1216	83	554	0	ENST00000375401.3:c.1342G>C	p.Glu448Gln	p.E448Q	ENST00000375401	NM_004187.3	448	Gaa/Caa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0014482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	39	377	2	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	89	648	1	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag						NEWRECORD																																																																									
CBFB	865	MSKCC	GRCh37	16	67063681	67063681	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	58	445	0	ENST00000412916.2:c.130T>G	p.Phe44Val	p.F44V	ENST00000412916		44	Ttc/Gtc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0011384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	180	372	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	229	372	0	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139403417	139403417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	147	466	0	ENST00000277541.6:c.3076G>A	p.Asp1026Asn	p.D1026N	ENST00000277541	NM_017617.3	1026	Gac/Aac						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9858201	9858201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1158	161	479	1	ENST00000330684.3:c.3200G>A	p.Arg1067Gln	p.R1067Q	ENST00000330684	NM_001134407.1	1067	cGg/cAg						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89346280	89346280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	56	409	0	ENST00000301030.4:c.6670G>A	p.Glu2224Lys	p.E2224K	ENST00000301030	NM_001256183.1	2224	Gag/Aag						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70357663	70357663	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	69	334	0	ENST00000374080.3:c.5914C>A	p.Pro1972Thr	p.P1972T	ENST00000374080		1972	Cct/Act						NEWRECORD																																																																									
RARA	5914	MSKCC	GRCh37	17	38512374	38512374	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	680	238	2	ENST00000254066.5:c.1285G>T	p.Gly429Cys	p.G429C	ENST00000254066	NM_000964.3	429	Ggt/Tgt						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16075298	16075298	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			670	208	404	0	ENST00000268712.3:c.254G>C	p.Arg85Thr	p.R85T	ENST00000268712	NM_006311.3	85	aGg/aCg						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39607450	39607450	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	207	530	0	ENST00000262039.4:c.1528G>C	p.Asp510His	p.D510H	ENST00000262039	NM_002647.2	510	Gat/Cat						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29483087	29483095	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CAAGTTTTC	CAAGTTTTC	TTGA			P-0005084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1072	114	558	0	ENST00000358273.4:c.147_155delinsTTGA	p.Lys50Ter	p.K50*	ENST00000358273	NM_001042492.2	49	taCAAGTTTTCt/taTTGAt						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	242	392	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0010684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	186	294	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat						NEWRECORD																																																																									
GPS2	2874	MSKCC	GRCh37	17	7216125	7216125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	503	924	1	ENST00000380728.2:c.934C>T	p.Arg312Trp	p.R312W	ENST00000380728		312	Cgg/Tgg						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149456898	149456898	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	386	602	0	ENST00000286301.3:c.830C>G	p.Ser277Cys	p.S277C	ENST00000286301	NM_005211.3	277	tCc/tGc						NEWRECORD																																																																									
GATA2	2624	MSKCC	GRCh37	3	128205846	128205846	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	149	480	0	ENST00000341105.2:c.29G>A	p.Trp10Ter	p.W10*	ENST00000341105	NM_032638.4	10	tGg/tAg						NEWRECORD																																																																									
NBN	4683	MSKCC	GRCh37	8	90965665	90965665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	31	452	0	ENST00000265433.3:c.1652G>A	p.Arg551Lys	p.R551K	ENST00000265433	NM_002485.4	551	aGg/aAg						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519972		P-0013797-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	132	944	1	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98211548	98211548	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013797-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	20	704	1	ENST00000331920.6:c.3607A>T	p.Ser1203Cys	p.S1203C	ENST00000331920	NM_000264.3	1203	Agc/Tgc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	285	382	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	96	245	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36939177	36939177	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs186379741		P-0009995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	335	590	3	ENST00000361632.4:c.532G>A	p.Val178Met	p.V178M	ENST00000361632		178	Gtg/Atg						NEWRECORD																																																																									
MDM4	4194	MSKCC	GRCh37	1	204518734	204518734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	205	382	1	ENST00000367182.3:c.1397G>T	p.Arg466Ile	p.R466I	ENST00000367182	NM_001278516.1	466	aGa/aTa						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89480383	89480383	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	251	440	1	ENST00000336596.2:c.2220G>T	p.Met740Ile	p.M740I	ENST00000336596	NM_005233.5	740	atG/atT						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32190861	32190861	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0009995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	226	425	0	ENST00000375023.3:c.76C>A	p.Leu26Met	p.L26M	ENST00000375023	NM_004557.3	26	Ctg/Atg						NEWRECORD																																																																									
SUFU	51684	MSKCC	GRCh37	10	104352340	104352340	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0009995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	392	379	0	ENST00000369902.3:c.456G>T	p.Glu152Asp	p.E152D	ENST00000369902	NM_016169.3	152	gaG/gaT						NEWRECORD																																																																									
TSHR	7253	MSKCC	GRCh37	14	81610281	81610281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	238	429	0	ENST00000298171.2:c.1879G>T	p.Ala627Ser	p.A627S	ENST00000298171	NM_000369.2	627	Gct/Tct						NEWRECORD																																																																									
CD276	80381	MSKCC	GRCh37	15	73995414	73995414	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	109	188	0	ENST00000318443.5:c.720G>T	p.Gln240His	p.Q240H	ENST00000318443	NM_001024736.1	240	caG/caT						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602877	10602877	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	303	407	0	ENST00000171111.5:c.701G>C	p.Arg234Pro	p.R234P	ENST00000171111	NM_203500.1	234	cGg/cCg						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76944405	76944405	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	180	509	0	ENST00000373344.5:c.500G>T	p.Gly167Val	p.G167V	ENST00000373344	NM_000489.3	167	gGg/gTg						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0010309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	409	355	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0010309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	230	478	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	351	466	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11188183	11188183	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0010309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	321	347	0	ENST00000361445.4:c.5911G>C	p.Ala1971Pro	p.A1971P	ENST00000361445	NM_004958.3	1971	Gcc/Ccc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0014265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	82	378	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46240692	46240695	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0014265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	72	378	0	ENST00000334344.6:c.1556_1559delATAG	p.Asp519ValfsTer9	p.D519Vfs*9	ENST00000334344	NM_152641.2	518	ATAGat/at						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46246074	46246075	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0014265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	62	399	0	ENST00000334344.6:c.4170_4171del	p.Pro1392AsnfsTer18	p.P1392Nfs*18	ENST00000334344	NM_152641.2	1390	ATa/a						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11105652	11105654	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0014265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	116	706	0	ENST00000344626.4:c.1570_1572del	p.Lys524del	p.K524del	ENST00000344626	NM_003072.3	523	gAGAag/gag						NEWRECORD																																																																									
RRAS	6237	MSKCC	GRCh37	19	50140165	50140165	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	133	584	0	ENST00000246792.3:c.260A>T	p.Gln87Leu	p.Q87L	ENST00000246792	NM_006270.3	87	cAg/cTg						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47164111	47164112	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0014265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	67	282	0	ENST00000409792.3:c.2014_2015del	p.Asn672TyrfsTer10	p.N672Yfs*10	ENST00000409792	NM_014159.6	672	AAt/t						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135787783	135787783	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	130	586	0	ENST00000298552.3:c.799A>G	p.Thr267Ala	p.T267A	ENST00000298552	NM_001162426.1	267	Aca/Gca						NEWRECORD																																																																									
CSDE1	7812	MSKCC	GRCh37	1	115266502	115266502	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0014768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	84	318	0	ENST00000438362.2:c.2011+2T>G		p.X671_splice	ENST00000438362	NM_001242891.1	671							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0014768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1250	523	703	0	ENST00000269305.4:c.376T>C	p.Tyr126His	p.Y126H	ENST00000269305	NM_001126112.2	126	Tac/Cac						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29462632	29462632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	370	532	0	ENST00000389048.3:c.2269G>A	p.Val757Met	p.V757M	ENST00000389048	NM_004304.4	757	Gtg/Atg						NEWRECORD																																																																									
CASP8	841	MSKCC	GRCh37	2	202149946	202149946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	132	440	2	ENST00000358485.4:c.1387G>A	p.Ala463Thr	p.A463T	ENST00000358485	NM_001080125.1	463	Gcc/Acc						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0014768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	80	387	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	62	262	1	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag						NEWRECORD																																																																									
PAX5	5079	MSKCC	GRCh37	9	36966548	36966548	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0014768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	92	380	0	ENST00000358127.4:c.778C>T	p.Gln260Ter	p.Q260*	ENST00000358127	NM_001280556.1	260	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	926	535	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602328	10602328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	1163	425	0	ENST00000171111.5:c.1250G>T	p.Gly417Val	p.G417V	ENST00000171111	NM_203500.1	417	gGg/gTg						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	26022398	26022398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	131	312	0	ENST00000435504.4:c.259G>A	p.Val87Met	p.V87M	ENST00000435504		87	Gtg/Atg						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55139816	55139816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	284	352	1	ENST00000257290.5:c.1477G>A	p.Val493Met	p.V493M	ENST00000257290	NM_006206.4	493	Gtg/Atg						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	94120423	94120423	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	917	615	0	ENST00000369303.4:c.628G>T	p.Glu210Ter	p.E210*	ENST00000369303	NM_004440.3	210	Gag/Tag						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108168095	108168095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	477	354	0	ENST00000278616.4:c.4991A>G	p.Glu1664Gly	p.E1664G	ENST00000278616	NM_000051.3	1664	gAa/gGa						NEWRECORD																																																																									
PTPN11	5781	MSKCC	GRCh37	12	112888162	112888162	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1363	362	467	0	ENST00000351677.2:c.178G>C	p.Gly60Arg	p.G60R	ENST00000351677	NM_002834.3	60	Ggt/Cgt						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28913396	28913396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	727	391	0	ENST00000282397.4:c.2397G>T	p.Met799Ile	p.M799I	ENST00000282397	NM_002019.4	799	atG/atT						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49033822	49033822	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	585	343	0	ENST00000267163.4:c.1961-2A>G		p.X654_splice	ENST00000267163	NM_000321.2	654							NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73355129	73355129	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	367	247	0	ENST00000377767.4:c.241G>C	p.Glu81Gln	p.E81Q	ENST00000377767	NM_014953.3	81	Gag/Cag						NEWRECORD																																																																									
FAM175A	84142	MSKCC	GRCh37	4	84384571	84384651	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCGAGACTCCGTCTCAAAAATAAATAAATAAATAAAAATTTTTAGCACAGAAAGTAGAGATGTGTTGTTTACTTACTTGCT	GCGAGACTCCGTCTCAAAAATAAATAAATAAATAAAAATTTTTAGCACAGAAAGTAGAGATGTGTTGTTTACTTACTTGCT	-			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	184	78	0	ENST00000321945.7:c.792_796+76del		p.X264_splice	ENST00000321945	NM_139076.2	264							NEWRECORD																																																																									
TNFAIP3	7128	MSKCC	GRCh37	6	138199868	138199871	+	frameshift_variant	Frame_Shift_Del	DEL	GGCT	GGCT	-			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	244	235	0	ENST00000237289.4:c.1286_1289del	p.Gly429AlafsTer47	p.G429Afs*47	ENST00000237289	NM_001270507.1	429	gGGCTc/gc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220666	1220666	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	1329	470	0	ENST00000326873.7:c.685del	p.Asp229ThrfsTer58	p.D229Tfs*58	ENST00000326873	NM_000455.4	228	ctG/ct						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0011195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	59	239	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0011195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	61	245	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0011195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	139	330	0	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0012266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	49	356	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0012266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	68	493	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0012266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	63	437	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135772068	135772068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	14	156	1	ENST00000298552.3:c.3049G>A	p.Glu1017Lys	p.E1017K	ENST00000298552	NM_001162426.1	1017	Gag/Aag						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89346258	89346258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	36	453	0	ENST00000301030.4:c.6692C>T	p.Ala2231Val	p.A2231V	ENST00000301030	NM_001256183.1	2231	gCc/gTc						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15271574	15271574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	46	639	0	ENST00000263388.2:c.6865G>A	p.Ala2289Thr	p.A2289T	ENST00000263388	NM_000435.2	2289	Gcc/Acc						NEWRECORD																																																																									
ETV6	2120	MSKCC	GRCh37	12	12006489	12006495	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GAAGAAG	GAAGAAG	-			P-0012266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	57	674	0	ENST00000396373.4:c.458_463+1del		p.EED153fs	ENST00000396373	NM_001987.4	153	GAAGAAGat/at						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	597	553	0	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153245350	153245350	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	254	488	0	ENST00000281708.4:c.1841T>C	p.Leu614Ser	p.L614S	ENST00000281708	NM_033632.3	614	tTa/tCa						NEWRECORD																																																																									
HIST1H3G	8355	MSKCC	GRCh37	6	26271340	26271340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	466	1099	0	ENST00000305910.3:c.273G>T	p.Met91Ile	p.M91I	ENST00000305910	NM_003534.2	91	atG/atT						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98232132	98232132	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	243	373	0	ENST00000331920.6:c.1810G>T	p.Glu604Ter	p.E604*	ENST00000331920	NM_000264.3	604	Gag/Tag						NEWRECORD																																																																									
YAP1	10413	MSKCC	GRCh37	11	102033240	102033240	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	514	479	0	ENST00000282441.5:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000282441	NM_001130145.2	209	cAg/cTg						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0011546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	231	267	0	ENST00000267163.4:c.1215+1G>C		p.X405_splice	ENST00000267163	NM_000321.2	405							NEWRECORD																																																																									
STAT3	6774	MSKCC	GRCh37	17	40489480	40489480	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	385	708	0	ENST00000264657.5:c.770A>G	p.Asn257Ser	p.N257S	ENST00000264657	NM_139276.2	257	aAc/aGc						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70356755	70356755	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	719	735	1	ENST00000374080.3:c.5427C>A	p.Ser1809Arg	p.S1809R	ENST00000374080		1809	agC/agA						NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100629600	100629600	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	555	609	0	ENST00000308731.7:c.164C>A	p.Ser55Ter	p.S55*	ENST00000308731	NM_000061.2	55	tCa/tAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577154	7577158	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACTA	CACTA	-			P-0011546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	249	494	0	ENST00000269305.4:c.783-3_784del		p.X261_splice	ENST00000269305	NM_001126112.2	261							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0012328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	35	530	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0012664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	90	351	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0012664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	26	316	1	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1164	185	689	3	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	88	329	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
FLCN	201163	MSKCC	GRCh37	17	17131402	17131402	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs398124537		P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	155	401	0	ENST00000285071.4:c.50G>A	p.Arg17His	p.R17H	ENST00000285071	NM_144997.5	17	cGc/cAc						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89259477	89259477	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200567888		P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	70	572	0	ENST00000336596.2:c.621G>T	p.Lys207Asn	p.K207N	ENST00000336596	NM_005233.5	207	aaG/aaT						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178922321	178922321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	181	351	0	ENST00000263967.3:c.1090G>A	p.Gly364Arg	p.G364R	ENST00000263967	NM_006218.2	364	Gga/Aga						NEWRECORD																																																																									
NEGR1	257194	MSKCC	GRCh37	1	72076745	72076745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	210	741	0	ENST00000357731.5:c.752C>T	p.Pro251Leu	p.P251L	ENST00000357731	NM_173808.2	251	cCg/cTg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178917499	178917499	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	88	355	0	ENST00000263967.3:c.374T>A	p.Val125Glu	p.V125E	ENST00000263967	NM_006218.2	125	gTg/gAg						NEWRECORD																																																																									
PHOX2B	8929	MSKCC	GRCh37	4	41749389	41749389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	131	332	0	ENST00000226382.2:c.406G>A	p.Asp136Asn	p.D136N	ENST00000226382	NM_003924.3	136	Gac/Aac						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112157605	112157605	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	120	414	0	ENST00000257430.4:c.1325T>A	p.Val442Asp	p.V442D	ENST00000257430	NM_000038.5	442	gTt/gAt						NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45007687	45007687	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	73	326	0	ENST00000558401.1:c.134G>T	p.Cys45Phe	p.C45F	ENST00000558401	NM_004048.2	45	tGc/tTc						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9943676	9943676	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	94	425	0	ENST00000330684.3:c.1265T>A	p.Ile422Lys	p.I422K	ENST00000330684	NM_001134407.1	422	aTa/aAa						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10250430	10250430	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	408	492	2	ENST00000340748.4:c.3822C>A	p.Phe1274Leu	p.F1274L	ENST00000340748		1274	ttC/ttA						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41564539	41564539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	161	498	0	ENST00000263253.7:c.3961G>A	p.Val1321Ile	p.V1321I	ENST00000263253	NM_001429.3	1321	Gtc/Atc						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53223467	53223467	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			954	198	587	0	ENST00000375401.3:c.3892T>G	p.Ser1298Ala	p.S1298A	ENST00000375401	NM_004187.3	1298	Tct/Gct						NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45007688	45007695	+	frameshift_variant	Frame_Shift_Del	DEL	CTATGTGT	CTATGTGT	-			P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	60	329	0	ENST00000558401.1:c.137_144del	p.Tyr46TrpfsTer8	p.Y46Wfs*8	ENST00000558401	NM_004048.2	45	tgCTATGTGTct/tgct						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013677-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	45	637	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115956	8115956	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	75	402	0	ENST00000346208.3:c.1305delC	p.Ser436ProfsTer39	p.S436Pfs*39	ENST00000346208		434	caC/ca						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99451943	99451943	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	84	429	2	ENST00000268035.6:c.1277A>G	p.Gln426Arg	p.Q426R	ENST00000268035	NM_000875.3	426	cAg/cGg						NEWRECORD																																																																									
SYK	6850	MSKCC	GRCh37	9	93657854	93657854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	160	489	0	ENST00000375746.1:c.1880G>A	p.Arg627His	p.R627H	ENST00000375746	NM_001174167.1	627	cGc/cAc						NEWRECORD																																																																									
CDC73	79577	MSKCC	GRCh37	1	193119433	193119433	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0014937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	584	314	0	ENST00000367435.3:c.829-1G>C		p.X277_splice	ENST00000367435	NM_024529.4	277							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	430	304	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	368	457	0	ENST00000269305.4:c.821T>A	p.Val274Asp	p.V274D	ENST00000269305	NM_001126112.2	274	gTt/gAt						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176710866	176710866	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	226	605	0	ENST00000439151.2:c.6088C>G	p.Gln2030Glu	p.Q2030E	ENST00000439151	NM_022455.4	2030	Cag/Gag						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32456396	32456396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	143	356	1	ENST00000332351.3:c.496G>A	p.Gly166Ser	p.G166S	ENST00000332351	NM_024426.4	166	Ggc/Agc						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57864396	57864396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1375	219	776	2	ENST00000228682.2:c.1873G>A	p.Glu625Lys	p.E625K	ENST00000228682	NM_005269.2	625	Gag/Aag						NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103506670	103506670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	172	382	1	ENST00000355739.4:c.413G>A	p.Arg138Gln	p.R138Q	ENST00000355739	NM_000123.3	138	cGa/cAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	164	670	0	ENST00000269305.4:c.800G>C	p.Arg267Pro	p.R267P	ENST00000269305	NM_001126112.2	267	cGg/cCg						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	142950045	142950045	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	63	582	1	ENST00000262992.4:c.2665G>T	p.Val889Leu	p.V889L	ENST00000262992	NM_001101669.1	889	Gta/Tta						NEWRECORD																																																																									
IRF4	3662	MSKCC	GRCh37	6	401699	401699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	163	493	0	ENST00000380956.4:c.1021G>A	p.Ala341Thr	p.A341T	ENST00000380956	NM_001195286.1	341	Gcg/Acg						NEWRECORD																																																																									
IRF4	3662	MSKCC	GRCh37	6	407578	407578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	237	612	0	ENST00000380956.4:c.1336C>T	p.His446Tyr	p.H446Y	ENST00000380956	NM_001195286.1	446	Cat/Tat						NEWRECORD																																																																									
EED	8726	MSKCC	GRCh37	11	85975212	85975212	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0013514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	36	367	0	ENST00000263360.6:c.635-2A>G		p.X212_splice	ENST00000263360	NM_003797.3	212							NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41244319	41244319	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	88	656	0	ENST00000357654.3:c.3229G>T	p.Gly1077Trp	p.G1077W	ENST00000357654	NM_007294.3	1077	Ggg/Tgg						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11143981	11143981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	53	430	0	ENST00000344626.4:c.3562G>A	p.Asp1188Asn	p.D1188N	ENST00000344626	NM_003072.3	1188	Gac/Aac						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42795806	42795806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	84	585	0	ENST00000575354.2:c.2795C>T	p.Ser932Leu	p.S932L	ENST00000575354	NM_015125.3	932	tCa/tTa						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40877327	40877327	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	21	312	0	ENST00000373198.4:c.2369G>T	p.Arg790Ile	p.R790I	ENST00000373198	NM_133170.3	790	aGa/aTa						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29657449	29657449	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	155	611	0	ENST00000358273.4:c.5746del	p.Ala1916GlnfsTer9	p.A1916Qfs*9	ENST00000358273	NM_001042492.2	1915	ctG/ct						NEWRECORD																																																																									
HIST1H2BD	3017	MSKCC	GRCh37	6	26158402	26158402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	397	397	0	ENST00000289316.2:c.5C>T	p.Pro2Leu	p.P2L	ENST00000289316	NM_138720.2	2	cCt/cTt						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692908	89692908	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	371	292	1	ENST00000371953.3:c.392C>A	p.Thr131Asn	p.T131N	ENST00000371953	NM_000314.4	131	aCt/aAt						NEWRECORD																																																																									
CUL3	8452	MSKCC	GRCh37	2	225367686	225367698	+	frameshift_variant	Frame_Shift_Del	DEL	GTTGCCTGTAGAT	GTTGCCTGTAGAT	-			P-0011088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1077	380	494	0	ENST00000264414.4:c.1469_1481del	p.His490LeufsTer5	p.H490Lfs*5	ENST00000264414	NM_003590.4	490	cATCTACAGGCAACt/ct						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010244-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	22	616	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
MYD88	4615	MSKCC	GRCh37	3	38182292	38182292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010244-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	61	569	2	ENST00000396334.3:c.728G>A	p.Ser243Asn	p.S243N	ENST00000396334	NM_002468.4	243	aGc/aAc						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0011040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1141	100	616	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0011040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	69	445	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68771330	68771330	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	45	249	0	ENST00000261769.5:c.12G>A	p.Trp4Ter	p.W4*	ENST00000261769	NM_004360.3	4	tgG/tgA						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16012205	16012205	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	75	323	0	ENST00000268712.3:c.2077G>T	p.Glu693Ter	p.E693*	ENST00000268712	NM_006311.3	693	Gag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	169	603	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	73	720	2	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31022616	31022616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	42	751	0	ENST00000375687.4:c.2101C>T	p.Pro701Ser	p.P701S	ENST00000375687	NM_015338.5	701	Cct/Tct						NEWRECORD																																																																									
ELF3	1999	MSKCC	GRCh37	1	201981243	201981243	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	43	1027	0	ENST00000359651.3:c.322G>C	p.Glu108Gln	p.E108Q	ENST00000359651		108	Gag/Cag						NEWRECORD																																																																									
PRKD1	5587	MSKCC	GRCh37	14	30046611	30046611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	45	658	2	ENST00000331968.5:c.2572C>T	p.Arg858Cys	p.R858C	ENST00000331968	NM_002742.2	858	Cgc/Tgc						NEWRECORD																																																																									
TCF3	6929	MSKCC	GRCh37	19	1619361	1619361	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	32	524	0	ENST00000344749.5:c.1280C>G	p.Ser427Ter	p.S427*	ENST00000344749	NM_001136139.2	427	tCa/tGa						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10277291	10277291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	47	955	0	ENST00000340748.4:c.826G>A	p.Glu276Lys	p.E276K	ENST00000340748		276	Gaa/Aaa						NEWRECORD																																																																									
CALR	811	MSKCC	GRCh37	19	13054641	13054641	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	34	518	0	ENST00000316448.5:c.1168G>C	p.Asp390His	p.D390H	ENST00000316448	NM_004343.3	390	Gac/Cac						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198281550	198281550	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	43	593	0	ENST00000335508.6:c.581C>G	p.Ser194Ter	p.S194*	ENST00000335508	NM_012433.2	194	tCa/tGa						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9561083	9561083	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	18	354	0	ENST00000353224.5:c.699A>C	p.Gln233His	p.Q233H	ENST00000353224	NM_177990.2	233	caA/caC						NEWRECORD																																																																									
RAD21	5885	MSKCC	GRCh37	8	117864207	117864207	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	37	500	0	ENST00000297338.2:c.1450G>C	p.Asp484His	p.D484H	ENST00000297338	NM_006265.2	484	Gac/Cac						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8492904	8492904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	45	509	1	ENST00000356435.5:c.2425G>T	p.Gly809Cys	p.G809C	ENST00000356435		809	Ggt/Tgt						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47039708	47039708	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	82	968	0	ENST00000329236.7:c.926G>T	p.Arg309Met	p.R309M	ENST00000329236	NM_001204466.1	309	aGg/aTg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	95	95	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	906	521	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc						NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48018116	48018116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	457	515	0	ENST00000234420.5:c.311C>T	p.Pro104Leu	p.P104L	ENST00000234420	NM_000179.2	104	cCc/cTc						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185183554	185183554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1378	392	419	0	ENST00000265026.3:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000265026	NM_004721.4	470	Gaa/Aaa						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86629108	86629108	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	395	357	2	ENST00000274376.6:c.853C>T	p.Arg285Ter	p.R285*	ENST00000274376	NM_002890.2	285	Cga/Tga						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180030257	180030257	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	800	623	2	ENST00000261937.6:c.4027C>A	p.Pro1343Thr	p.P1343T	ENST00000261937	NM_182925.4	1343	Cca/Aca						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55371999	55371999	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	237	299	0	ENST00000297316.4:c.689T>C	p.Val230Ala	p.V230A	ENST00000297316	NM_022454.3	230	gTg/gCg						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5054682	5054682	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	405	369	0	ENST00000381652.3:c.734C>A	p.Ala245Asp	p.A245D	ENST00000381652	NM_004972.3	245	gCc/gAc						NEWRECORD																																																																									
SH2B3	10019	MSKCC	GRCh37	12	111856604	111856604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	313	251	1	ENST00000341259.2:c.655C>T	p.Arg219Cys	p.R219C	ENST00000341259	NM_005475.2	219	Cgc/Tgc						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29548916	29548916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	193	273	0	ENST00000358273.4:c.1690G>A	p.Asp564Asn	p.D564N	ENST00000358273	NM_001042492.2	564	Gat/Aat						NEWRECORD																																																																									
AXL	558	MSKCC	GRCh37	19	41743997	41743997	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	378	571	3	ENST00000301178.4:c.932G>T	p.Cys311Phe	p.C311F	ENST00000301178	NM_021913.4	311	tGc/tTc						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39933413	39933413	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	336	482	0	ENST00000378444.4:c.1186G>T	p.Ala396Ser	p.A396S	ENST00000378444	NM_001123385.1	396	Gct/Tct						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76855928	76855929	+	missense_variant	Missense_Mutation	DNP	AG	AG	CT			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1078	215	607	0	ENST00000373344.5:c.5671_5672inv	p.Leu1891Arg	p.L1891R	ENST00000373344	NM_000489.3	1891	CTa/AGa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28929495		P-0014729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	211	358	0	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0014729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	252	358	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	254	558	0	ENST00000269305.4:c.857A>C	p.Glu286Ala	p.E286A	ENST00000269305	NM_001126112.2	286	gAa/gCa						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25965377	25965377	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	263	395	0	ENST00000435504.4:c.3829G>T	p.Val1277Leu	p.V1277L	ENST00000435504		1277	Gtg/Ttg						NEWRECORD																																																																									
MSH3	4437	MSKCC	GRCh37	5	79960997	79960997	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	54	298	0	ENST00000265081.6:c.394A>G	p.Lys132Glu	p.K132E	ENST00000265081	NM_002439.4	132	Aag/Gag						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0010279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	14	380	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46125048	46125048	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	56	472	0	ENST00000334344.6:c.235C>G	p.Pro79Ala	p.P79A	ENST00000334344	NM_152641.2	79	Ccc/Gcc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151878530	151878530	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	227	602	0	ENST00000262189.6:c.6415C>T	p.Arg2139Ter	p.R2139*	ENST00000262189	NM_170606.2	2139	Cga/Tga						NEWRECORD																																																																									
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0011296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1187	418	989	6	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67588162	67588162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	184	334	0	ENST00000274335.5:c.992C>T	p.Ala331Val	p.A331V	ENST00000274335		331	gCt/gTt						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131976385	131976385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	366	559	1	ENST00000265335.6:c.3640C>T	p.Arg1214Cys	p.R1214C	ENST00000265335		1214	Cgc/Tgc						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66943680	66943680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	419	377	0	ENST00000374690.3:c.2760G>T	p.Gln920His	p.Q920H	ENST00000374690	NM_000044.3	920	caG/caT						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76889172	76889172	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	153	384	0	ENST00000373344.5:c.4838T>G	p.Leu1613Trp	p.L1613W	ENST00000373344	NM_000489.3	1613	tTg/tGg						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70119683	70119683	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0011296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1118	449	641	0	ENST00000245479.2:c.687del		p.X229_splice	ENST00000245479	NM_000346.3	229							NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110436297	110436314	+	inframe_deletion	In_Frame_Del	DEL	CGGCGGCGGCGGCGGCGG	CGGCGGCGGCGGCGGCGG	-			P-0011296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	46	48	0	ENST00000375856.3:c.2087_2104del	p.Ala696_Ala701del	p.A696_A701del	ENST00000375856	NM_003749.2	696	gCCGCCGCCGCCGCCGCCGtg/gtg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0014856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	40	224	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt						NEWRECORD																																																																									
CBFB	865	MSKCC	GRCh37	16	67100651	67100651	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	155	510	0	ENST00000412916.2:c.349C>T	p.Gln117Ter	p.Q117*	ENST00000412916		117	Caa/Taa						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16075230	16075230	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	99	433	0	ENST00000268712.3:c.322C>T	p.Arg108Ter	p.R108*	ENST00000268712	NM_006311.3	108	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	37	433	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0013894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	10	227	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0013894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	24	316	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga						NEWRECORD																																																																									
FGF3	2248	MSKCC	GRCh37	11	69625251	69625251	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148203315		P-0013894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	39	689	1	ENST00000334134.2:c.542G>A	p.Arg181His	p.R181H	ENST00000334134	NM_005247.2	181	cGc/cAc						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149516594	149516594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150173975		P-0013894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	38	601	3	ENST00000261799.4:c.17C>T	p.Ala6Val	p.A6V	ENST00000261799	NM_002609.3	6	gCg/gTg						NEWRECORD																																																																									
CDKN1B	1027	MSKCC	GRCh37	12	12870780	12870780	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	23	212	0	ENST00000228872.4:c.7A>G	p.Asn3Asp	p.N3D	ENST00000228872	NM_004064.3	3	Aac/Gac						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98231194	98231194	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	27	402	0	ENST00000331920.6:c.2089del	p.Leu697SerfsTer49	p.L697Sfs*49	ENST00000331920	NM_000264.3	697	Ctc/tc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	210	611	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	243	629	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8636754	8636754	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	135	482	0	ENST00000356435.5:c.155G>T	p.Arg52Ile	p.R52I	ENST00000356435		52	aGa/aTa						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63850620	63850620	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	25	251	1	ENST00000279873.7:c.1399-1G>T		p.X467_splice	ENST00000279873	NM_032199.2	467							NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10597459	10597459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	256	829	0	ENST00000171111.5:c.1744G>A	p.Glu582Lys	p.E582K	ENST00000171111	NM_203500.1	582	Gag/Aag						NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50905343	50905343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	128	802	0	ENST00000440232.2:c.551G>T	p.Gly184Val	p.G184V	ENST00000440232	NM_002691.3	184	gGg/gTg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40899067	40899067	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	114	608	1	ENST00000373198.4:c.2203C>A	p.Pro735Thr	p.P735T	ENST00000373198	NM_133170.3	735	Ccg/Acg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41306634	41306634	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	194	729	1	ENST00000373198.4:c.1025C>A	p.Ser342Tyr	p.S342Y	ENST00000373198	NM_133170.3	342	tCt/tAt						NEWRECORD																																																																									
AURKA	6790	MSKCC	GRCh37	20	54945663	54945663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	14	301	0	ENST00000312783.6:c.907G>A	p.Gly303Ser	p.G303S	ENST00000312783	NM_198436.1	303	Ggt/Agt						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52651403	52651403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	161	598	0	ENST00000394830.3:c.1693C>T	p.Pro565Ser	p.P565S	ENST00000394830	NM_018313.4	565	Cca/Tca						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173789	112173789	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	103	371	0	ENST00000257430.4:c.2498G>T	p.Ser833Ile	p.S833I	ENST00000257430	NM_000038.5	833	aGc/aTc						NEWRECORD																																																																									
PRDM1	639	MSKCC	GRCh37	6	106553793	106553793	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	120	389	0	ENST00000369096.4:c.1758G>C	p.Gln586His	p.Q586H	ENST00000369096	NM_001198.3	586	caG/caC						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50467880	50467880	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	65	403	0	ENST00000331340.3:c.1115A>G	p.Asn372Ser	p.N372S	ENST00000331340	NM_006060.4	372	aAc/aGc						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66937394	66937394	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	213	351	0	ENST00000374690.3:c.2248A>T	p.Met750Leu	p.M750L	ENST00000374690	NM_000044.3	750	Atg/Ttg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0014123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	51	682	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89685308	89685308	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	36	310	0	ENST00000371953.3:c.203A>G	p.Tyr68Cys	p.Y68C	ENST00000371953	NM_000314.4	68	tAc/tGc						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	165	299	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49033971	49033971	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0012931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	211	290	0	ENST00000267163.4:c.2106+2T>A		p.X702_splice	ENST00000267163	NM_000321.2	702							NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66213784	66213784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	194	385	0	ENST00000273854.3:c.2646G>T	p.Met882Ile	p.M882I	ENST00000273854	NM_004439.5	882	atG/atT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0012931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	285	372	0	ENST00000269305.4:c.375+1delG		p.X125_splice	ENST00000269305	NM_001126112.2	125							NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178096588	178096588	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	133	279	0	ENST00000397062.3:c.743A>G	p.Asn248Ser	p.N248S	ENST00000397062	NM_006164.4	248	aAt/aGt						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30681928	30681928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	159	189	0	ENST00000376406.3:c.169G>A	p.Gly57Ser	p.G57S	ENST00000376406	NM_014641.2	57	Ggc/Agc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151900114	151900114	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	35	154	0	ENST00000262189.6:c.3997G>T	p.Glu1333Ter	p.E1333*	ENST00000262189	NM_170606.2	1333	Gaa/Taa						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15961008	15961008	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	216	360	0	ENST00000268712.3:c.6212A>G	p.Gln2071Arg	p.Q2071R	ENST00000268712	NM_006311.3	2071	cAg/cGg						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39575959	39575959	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0012931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	51	201	0	ENST00000262039.4:c.891+1G>T		p.X297_splice	ENST00000262039	NM_002647.2	297							NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50902298	50902298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1663	708	1892	1	ENST00000440232.2:c.190G>A	p.Gly64Arg	p.G64R	ENST00000440232	NM_002691.3	64	Ggg/Agg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0011326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	230	312	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0011326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	162	375	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt						NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0011326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1436	205	549	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15965141	15965141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	116	151	0	ENST00000268712.3:c.5455G>T	p.Asp1819Tyr	p.D1819Y	ENST00000268712	NM_006311.3	1819	Gat/Tat						NEWRECORD																																																																									
ERCC2	2068	MSKCC	GRCh37	19	45867295	45867295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	78	199	0	ENST00000391945.4:c.898G>A	p.Glu300Lys	p.E300K	ENST00000391945	NM_000400.3	300	Gag/Aag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	TTT			P-0011326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	431	404	0	ENST00000275493.2:c.2237_2251delinsTTT	p.Glu746_Thr751delinsValSer	p.E746_T751delinsVS	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gTTTca						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0013016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	488	467	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	149997764	149997764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	183	420	1	ENST00000253339.5:c.2703G>T	p.Gln901His	p.Q901H	ENST00000253339		901	caG/caT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577595	7577598	+	frameshift_variant	Frame_Shift_Del	DEL	CAGT	CAGT	-			P-0013016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	314	397	0	ENST00000269305.4:c.683_686delACTG	p.Asp228ValfsTer18	p.D228Vfs*18	ENST00000269305	NM_001126112.2	228	gACTGt/gt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0014621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	277	814	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	235	705	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0014621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	145	548	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41573978	41573978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	246	768	0	ENST00000263253.7:c.6263G>A	p.Arg2088Gln	p.R2088Q	ENST00000263253	NM_001429.3	2088	cGg/cAg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	228	664	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0014651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	409	719	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67479811	67479811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	756	803	1	ENST00000327367.4:c.1118G>A	p.Arg373His	p.R373H	ENST00000327367	NM_005902.3	373	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0014651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	257	313	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0013812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	67	711	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56494882	56494882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	16	355	0	ENST00000267101.3:c.3239G>A	p.Arg1080His	p.R1080H	ENST00000267101	NM_001982.3	1080	cGt/cAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	53	459	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	183	557	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0011504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	62	486	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0011504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	71	624	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28919625	28919625	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			954	54	678	0	ENST00000282397.4:c.2312T>C	p.Leu771Pro	p.L771P	ENST00000282397	NM_002019.4	771	cTc/cCc						NEWRECORD																																																																									
TRAF7	84231	MSKCC	GRCh37	16	2226062	2226062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1350	89	701	0	ENST00000326181.6:c.1759G>A	p.Glu587Lys	p.E587K	ENST00000326181	NM_032271.2	587	Gag/Aag						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40757468	40757468	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0011504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	94	708	0	ENST00000373198.4:c.2830G>T	p.Asp944Tyr	p.D944Y	ENST00000373198	NM_133170.3	944	Gac/Tac						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76972655	76972655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1153	89	955	1	ENST00000373344.5:c.86C>A	p.Ser29Tyr	p.S29Y	ENST00000373344	NM_000489.3	29	tCt/tAt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0012850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	44	420	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
MDM2	4193	MSKCC	GRCh37	12	69233408	69233408	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	105	529	0	ENST00000462284.1:c.1273A>C	p.Thr425Pro	p.T425P	ENST00000462284	NM_002392.5	425	Acc/Ccc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0012135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	48	272	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0012135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	21	224	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	129	319	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
CBFB	865	MSKCC	GRCh37	16	67116156	67116156	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	179	485	1	ENST00000412916.2:c.441del	p.Arg148GlufsTer31	p.R148Efs*31	ENST00000412916		147	cGg/cg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	506	584	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	523	627	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt						NEWRECORD																																																																									
STK40	83931	MSKCC	GRCh37	1	36807439	36807439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	236	613	0	ENST00000373129.3:c.1225C>T	p.Pro409Ser	p.P409S	ENST00000373129	NM_032017.1	409	Ccg/Tcg						NEWRECORD																																																																									
ELF3	1999	MSKCC	GRCh37	1	201984417	201984417	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	731	677	0	ENST00000359651.3:c.1083del	p.Trp361Ter	p.W361*	ENST00000359651		361	tGg/tg						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70333449	70333449	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	213	580	0	ENST00000373644.4:c.1357del	p.Gln453LysfsTer39	p.Q453Kfs*39	ENST00000373644	NM_030625.2	452	Ccc/cc						NEWRECORD																																																																									
IGF2	3481	MSKCC	GRCh37	11	2154882	2154882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	489	660	0	ENST00000434045.2:c.339C>A	p.Ser113Arg	p.S113R	ENST00000434045	NM_001127598.1	113	agC/agA						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108127042	108127042	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	181	382	0	ENST00000278616.4:c.2225A>C	p.Lys742Thr	p.K742T	ENST00000278616	NM_000051.3	742	aAg/aCg						NEWRECORD																																																																									
CDKN1B	1027	MSKCC	GRCh37	12	12870877	12870877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	252	191	0	ENST00000228872.4:c.104C>T	p.Pro35Leu	p.P35L	ENST00000228872	NM_004064.3	35	cCg/cTg						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28882977	28882977	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	A			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	737	577	0	ENST00000282397.4:c.3720+3A>T		p.X1240_splice	ENST00000282397	NM_002019.4	1240							NEWRECORD																																																																									
MAX	4149	MSKCC	GRCh37	14	65544630	65544631	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	335	427	0	ENST00000358664.4:c.295_295+1delinsTT		p.X99_splice	ENST00000358664	NM_002382.4	99							NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88678397	88678397	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	268	706	1	ENST00000360948.2:c.1139C>A	p.Ala380Asp	p.A380D	ENST00000360948	NM_001012338.2	380	gCc/gAc						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72821683	72821683	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	135	208	0	ENST00000268489.5:c.10492C>G	p.Gln3498Glu	p.Q3498E	ENST00000268489	NM_006885.3	3498	Caa/Gaa						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89350203	89350203	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	234	665	1	ENST00000301030.4:c.2747A>T	p.Asn916Ile	p.N916I	ENST00000301030	NM_001256183.1	916	aAc/aTc						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16004817	16004817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	288	514	0	ENST00000268712.3:c.2437C>T	p.Pro813Ser	p.P813S	ENST00000268712	NM_006311.3	813	Ccc/Tcc						NEWRECORD																																																																									
SOS1	6654	MSKCC	GRCh37	2	39224440	39224440	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs727505016		P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	540	537	0	ENST00000402219.2:c.2918A>T	p.Gln973Leu	p.Q973L	ENST00000402219	NM_005633.3	973	cAg/cTg						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212251704	212251704	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	409	303	0	ENST00000342788.4:c.3355G>C	p.Val1119Leu	p.V1119L	ENST00000342788	NM_005235.2	1119	Gtc/Ctc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41101180	41101180	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	369	466	0	ENST00000373198.4:c.1176C>A	p.Asn392Lys	p.N392K	ENST00000373198	NM_133170.3	392	aaC/aaA						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41385101	41385101	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	396	588	0	ENST00000373198.4:c.859+1G>T		p.X287_splice	ENST00000373198	NM_133170.3	287							NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89259044	89259044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	119	210	0	ENST00000336596.2:c.188C>A	p.Thr63Lys	p.T63K	ENST00000336596	NM_005233.5	63	aCa/aAa						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134851685	134851685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	198	399	0	ENST00000398015.3:c.1091G>T	p.Arg364Leu	p.R364L	ENST00000398015	NM_004441.4	364	cGg/cTg						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142259791	142259791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	557	549	2	ENST00000350721.4:c.3536G>T	p.Arg1179Ile	p.R1179I	ENST00000350721	NM_001184.3	1179	aGa/aTa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187518153	187518154	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AG			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	170	469	2	ENST00000441802.2:c.12540_12541delinsCT	p.Glu4181Ter	p.E4181*	ENST00000441802	NM_005245.3	4180	gcGGaa/gcCTaa						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41729475	41729475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	1177	461	0	ENST00000242208.4:c.1054G>T	p.Gly352Cys	p.G352C	ENST00000242208	NM_002192.2	352	Ggt/Tgt						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50367286	50367286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	381	365	1	ENST00000331340.3:c.93G>T	p.Met31Ile	p.M31I	ENST00000331340	NM_006060.4	31	atG/atT						NEWRECORD																																																																									
FGFR1	2260	MSKCC	GRCh37	8	38283735	38283735	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	189	524	0	ENST00000425967.3:c.743T>C	p.Met248Thr	p.M248T	ENST00000425967	NM_001174067.1	248	aTg/aCg						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974693	21974710	+	frameshift_variant	Frame_Shift_Del	DEL	CCGTAACTATTCGGTGCG	CCGTAACTATTCGGTGCG	T			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	330	420	0	ENST00000304494.5:c.117_134delinsA	p.Asn39LysfsTer75	p.N39Kfs*75	ENST00000304494	NM_000077.4	39	aaCGCACCGAATAGTTACGGt/aaAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0010525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	57	430	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108235837	108235837	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	54	564	2	ENST00000278616.4:c.8879G>T	p.Trp2960Leu	p.W2960L	ENST00000278616	NM_000051.3	2960	tGg/tTg						NEWRECORD																																																																									
HNF1A	6927	MSKCC	GRCh37	12	121431414	121431414	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	47	423	1	ENST00000257555.6:c.618G>T	p.Trp206Cys	p.W206C	ENST00000257555		206	tgG/tgT						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143043375	143043376	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0010525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	39	465	0	ENST00000262992.4:c.2040_2041delinsTT	p.Glu680_Asp681delinsAspTyr	p.E680_D681delinsDY	ENST00000262992	NM_001101669.1	680	gaGGac/gaTTac						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	173	504	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	47	486	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0013020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	154	568	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0013020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	122	445	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	61	305	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174413	112174414	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0013020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	133	357	0	ENST00000257430.4:c.3123_3124del	p.Pro1043PhefsTer4	p.P1043Ffs*4	ENST00000257430	NM_000038.5	1041	cAA/c						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143191881	143191881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs184155869		P-0013020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	155	784	1	ENST00000262992.4:c.550G>A	p.Val184Met	p.V184M	ENST00000262992	NM_001101669.1	184	Gtg/Atg						NEWRECORD																																																																									
HIST1H3C	8352	MSKCC	GRCh37	6	26045696	26045696	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1608	201	1137	5	ENST00000540144.1:c.58C>A	p.Gln20Lys	p.Q20K	ENST00000540144	NM_003531.2	20	Cag/Aag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0010563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	1069	350	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579559	7579559	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	155	291	0	ENST00000269305.4:c.128delT	p.Leu43Ter	p.L43*	ENST00000269305	NM_001126112.2	43	tTg/tg						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189585668	189585668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	190	347	1	ENST00000264731.3:c.929G>A	p.Ser310Asn	p.S310N	ENST00000264731	NM_003722.4	310	aGc/aAc						NEWRECORD																																																																									
MALT1	10892	MSKCC	GRCh37	18	56367749	56367749	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1354	327	612	0	ENST00000348428.3:c.575T>G	p.Val192Gly	p.V192G	ENST00000348428	NM_006785.3	192	gTt/gGt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	208	484	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	227	761	0	ENST00000269305.4:c.820G>C	p.Val274Leu	p.V274L	ENST00000269305	NM_001126112.2	274	Gtt/Ctt						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47158141	47158141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	274	720	0	ENST00000409792.3:c.4558T>C	p.Cys1520Arg	p.C1520R	ENST00000409792	NM_014159.6	1520	Tgt/Cgt						NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103510691	103510691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	196	400	0	ENST00000355739.4:c.595G>A	p.Glu199Lys	p.E199K	ENST00000355739	NM_000123.3	199	Gaa/Aaa						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91347538	91347538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	99	485	0	ENST00000355112.3:c.3700G>A	p.Gly1234Ser	p.G1234S	ENST00000355112	NM_000057.2	1234	Ggt/Agt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27087050	27087401	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTGCCTGTAATCCCAGCCACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGTCAGAGGTTGCGATGAGCCGAGACGTGCCATTGCACTCCAGCCTGGGCAACGAGTGAAACACTGTCTCAAAAAAAAAAATTTTTTTTTTTAATAAAAATAGTATCATGACTAAAGAACGTGTGTGATGTATTTGCTCTTGGTTGTTTAAGGAAAATGCTAAGCAAGTAGTAGGATTATTGAAAGTAGAATCTTTCTGCCTAATATTACTAATCCATGTTCTTATATATATGTTCTAGGATCTATCTGGTTCAATAGATGACCTCCCCATGGGGACAGAAGGAGCTCTGAGTC	CTTGCCTGTAATCCCAGCCACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGTCAGAGGTTGCGATGAGCCGAGACGTGCCATTGCACTCCAGCCTGGGCAACGAGTGAAACACTGTCTCAAAAAAAAAAATTTTTTTTTTTAATAAAAATAGTATCATGACTAAAGAACGTGTGTGATGTATTTGCTCTTGGTTGTTTAAGGAAAATGCTAAGCAAGTAGTAGGATTATTGAAAGTAGAATCTTTCTGCCTAATATTACTAATCCATGTTCTTATATATATGTTCTAGGATCTATCTGGTTCAATAGATGACCTCCCCATGGGGACAGAAGGAGCTCTGAGTC	-			P-0012143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2	66	2	0	ENST00000324856.7:c.1921-295_1977del		p.X641_splice	ENST00000324856	NM_006015.4	641							NEWRECORD																																																																									
MAPK3	5595	MSKCC	GRCh37	16	30133278	30133313	+	inframe_deletion	In_Frame_Del	DEL	TGATCTTCTTGATGGCCACGCGAGTCTTGCGCACGT	TGATCTTCTTGATGGCCACGCGAGTCTTGCGCACGT	-			P-0012143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	275	903	0	ENST00000263025.4:c.185_220del	p.His62_Ser74delinsArg	p.H62_S74delinsR	ENST00000263025	NM_002746.2	62	cACGTGCGCAAGACTCGCGTGGCCATCAAGAAGATCAgc/cgc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	42	196	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0014456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1212	216	435	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	73	420	0	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt						NEWRECORD																																																																									
TP53BP1	7158	MSKCC	GRCh37	15	43713272	43713272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1324	84	661	1	ENST00000382044.4:c.4201C>T	p.Arg1401Cys	p.R1401C	ENST00000382044	NM_001141980.1	1401	Cgt/Tgt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112162834	112162834	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	43	375	0	ENST00000257430.4:c.1438C>T	p.Gln480Ter	p.Q480*	ENST00000257430	NM_000038.5	480	Caa/Taa						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32184830	32184830	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150609093		P-0014456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	48	394	1	ENST00000375023.3:c.1753C>T	p.Arg585Cys	p.R585C	ENST00000375023	NM_004557.3	585	Cgc/Tgc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27101359	27101374	+	frameshift_variant	Frame_Shift_Del	DEL	CCATGGCACACGCCAG	CCATGGCACACGCCAG	-			P-0013983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	51	682	0	ENST00000324856.7:c.4643_4658del	p.His1548ProfsTer12	p.H1548Pfs*12	ENST00000324856	NM_006015.4	1547	tcCCATGGCACACGCCAG/tc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	101	244	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	118	357	1	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974730	21974730	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	102	412	0	ENST00000304494.5:c.97G>T	p.Glu33Ter	p.E33*	ENST00000304494	NM_000077.4	33	Gag/Tag						NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	224	679	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa						NEWRECORD																																																																									
MST1R	4486	MSKCC	GRCh37	3	49933743	49933743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	172	727	1	ENST00000296474.3:c.2534G>A	p.Arg845Gln	p.R845Q	ENST00000296474	NM_002447.2	845	cGa/cAa						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16255845	16255845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	108	349	0	ENST00000375759.3:c.3110G>A	p.Arg1037Lys	p.R1037K	ENST00000375759	NM_015001.2	1037	aGa/aAa						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115112073	115112091	+	frameshift_variant	Frame_Shift_Del	DEL	AGGCCCGAGACACCGGTGG	AGGCCCGAGACACCGGTGG	-			P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	130	481	0	ENST00000257566.3:c.1649_1667del	p.Ser550TrpfsTer76	p.S550Wfs*76	ENST00000257566	NM_016569.3	550	tCCACCGGTGTCTCGGGCCTg/tg						NEWRECORD																																																																									
RAD51C	5889	MSKCC	GRCh37	17	56780598	56780598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	167	606	0	ENST00000337432.4:c.613C>T	p.Leu205Phe	p.L205F	ENST00000337432	NM_058216.2	205	Ctt/Ttt						NEWRECORD																																																																									
RAD51C	5889	MSKCC	GRCh37	17	56780604	56780604	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	170	591	0	ENST00000337432.4:c.619C>G	p.His207Asp	p.H207D	ENST00000337432	NM_058216.2	207	Cat/Gat						NEWRECORD																																																																									
MALT1	10892	MSKCC	GRCh37	18	56414665	56414665	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	95	628	0	ENST00000348428.3:c.2066C>A	p.Ser689Ter	p.S689*	ENST00000348428	NM_006785.3	689	tCa/tAa						NEWRECORD																																																																									
FAM175A	84142	MSKCC	GRCh37	4	84383704	84383704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	105	642	0	ENST00000321945.7:c.1148C>T	p.Ser383Phe	p.S383F	ENST00000321945	NM_139076.2	383	tCc/tTc						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140481417	140481417	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	57	556	0	ENST00000288602.6:c.1391G>C	p.Gly464Ala	p.G464A	ENST00000288602	NM_004333.4	464	gGa/gCa						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76872120	76872120	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	218	718	0	ENST00000373344.5:c.5527C>G	p.Gln1843Glu	p.Q1843E	ENST00000373344	NM_000489.3	1843	Cag/Gag						NEWRECORD																																																																									
RYBP	23429	MSKCC	GRCh37	3	72495732	72495732	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	137	677	6	ENST00000477973.2:c.338T>G	p.Trp114Gly	p.W114G	ENST00000477973	NM_012234.5	114	Tgg/Ggg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	155	547	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	124	814	1	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	260	906	0	ENST00000269305.4:c.643A>G	p.Ser215Gly	p.S215G	ENST00000269305	NM_001126112.2	215	Agt/Ggt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591846	48591846	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	179	769	3	ENST00000342988.3:c.1009G>T	p.Glu337Ter	p.E337*	ENST00000342988	NM_005359.5	337	Gag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	181	396	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913386		P-0011339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	107	266	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0011339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	261	342	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27099397	27099397	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	181	413	3	ENST00000324856.7:c.3634C>T	p.Gln1212Ter	p.Q1212*	ENST00000324856	NM_006015.4	1212	Cag/Tag						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023943	27023943	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	40	50	0	ENST00000324856.7:c.1049C>A	p.Ser350Ter	p.S350*	ENST00000324856	NM_006015.4	350	tCg/tAg						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89839769	89839769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	558	511	0	ENST00000389301.3:c.1924G>A	p.Glu642Lys	p.E642K	ENST00000389301	NM_000135.2	642	Gaa/Aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	629	513	1	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt						NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52719113	52719113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	395	357	0	ENST00000322088.6:c.889G>A	p.Glu297Lys	p.E297K	ENST00000322088	NM_014225.5	297	Gag/Aag						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29917824	29917824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1332	214	499	0	ENST00000389048.3:c.844G>T	p.Asp282Tyr	p.D282Y	ENST00000389048	NM_004304.4	282	Gac/Tac						NEWRECORD																																																																									
RASA1	5921	MSKCC	GRCh37	5	86672713	86672713	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	291	335	3	ENST00000274376.6:c.2200G>T	p.Glu734Ter	p.E734*	ENST00000274376	NM_002890.2	734	Gaa/Taa						NEWRECORD																																																																									
HIST1H2BD	3017	MSKCC	GRCh37	6	26158602	26158602	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	317	143	0	ENST00000289316.2:c.205G>C	p.Asp69His	p.D69H	ENST00000289316	NM_138720.2	69	Gac/Cac						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117631243	117631243	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	133	397	0	ENST00000368508.3:c.6434+1G>A		p.X2145_splice	ENST00000368508	NM_002944.2	2145							NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139410511	139410511	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	695	366	1	ENST00000277541.6:c.1591G>T	p.Glu531Ter	p.E531*	ENST00000277541	NM_017617.3	531	Gag/Tag						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115976	8115976	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	173	129	0	ENST00000346208.3:c.1322C>A	p.Ala441Asp	p.A441D	ENST00000346208		441	gCc/gAc						NEWRECORD																																																																									
CBL	867	MSKCC	GRCh37	11	119144609	119144609	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			938	194	404	0	ENST00000264033.4:c.622G>C	p.Ala208Pro	p.A208P	ENST00000264033	NM_005188.3	208	Gct/Cct						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49415936	49415936	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	386	333	0	ENST00000301067.7:c.16413-2A>T		p.X5471_splice	ENST00000301067	NM_003482.3	5471							NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63533039	63533039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1231	264	513	1	ENST00000307078.5:c.1855G>A	p.Val619Ile	p.V619I	ENST00000307078	NM_004655.3	619	Gtc/Atc						NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52719813	52719813	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1220	232	474	0	ENST00000322088.6:c.1025A>C	p.Lys342Thr	p.K342T	ENST00000322088	NM_014225.5	342	aAg/aCg						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114925711	114925711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1548	261	659	1	ENST00000543371.1:c.1789G>A	p.Val597Ile	p.V597I	ENST00000543371	NM_001198531.1	597	Gtc/Atc						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32170054	32170054	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	227	404	0	ENST00000375023.3:c.3554G>T	p.Gly1185Val	p.G1185V	ENST00000375023	NM_004557.3	1185	gGg/gTg						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061192	38061192	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	94	199	0	ENST00000250448.2:c.797T>G	p.Phe266Cys	p.F266C	ENST00000250448	NM_004496.3	266	tTc/tGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	436	401	0	ENST00000269305.4:c.823T>G	p.Cys275Gly	p.C275G	ENST00000269305	NM_001126112.2	275	Tgt/Ggt						NEWRECORD																																																																									
STAT5A	6776	MSKCC	GRCh37	17	40460234	40460234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	251	460	0	ENST00000345506.4:c.1945C>T	p.Arg649Trp	p.R649W	ENST00000345506	NM_003152.3	649	Cgg/Tgg						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76812945	76812947	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0010823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	143	164	0	ENST00000373344.5:c.6674_6676del	p.Lys2225del	p.K2225del	ENST00000373344	NM_000489.3	2225	aAGAgg/agg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009276-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			783	62	552	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009276-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	116	661	2	ENST00000269305.4:c.422G>T	p.Cys141Phe	p.C141F	ENST00000269305	NM_001126112.2	141	tGc/tTc						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1293731	1293731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009276-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			509	48	392	0	ENST00000310581.5:c.1270G>T	p.Gly424Cys	p.G424C	ENST00000310581	NM_198253.2	424	Ggt/Tgt						NEWRECORD																																																																									
PMS1	5378	MSKCC	GRCh37	2	190719706	190719706	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009276-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			709	40	443	0	ENST00000441310.2:c.1708G>T	p.Val570Leu	p.V570L	ENST00000441310	NM_000534.4	570	Gta/Tta						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	1086	583	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0013361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	26	243	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46245258	46245258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	91	579	0	ENST00000334344.6:c.3352C>A	p.Gln1118Lys	p.Q1118K	ENST00000334344	NM_152641.2	1118	Cag/Aag						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88472478	88472478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	94	858	1	ENST00000360948.2:c.2077G>T	p.Val693Leu	p.V693L	ENST00000360948	NM_001012338.2	693	Gtg/Ttg						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88727505	88727505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	77	710	1	ENST00000360948.2:c.274C>T	p.His92Tyr	p.H92Y	ENST00000360948	NM_001012338.2	92	Cac/Tac						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99442714	99442714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	112	665	0	ENST00000268035.6:c.1111G>A	p.Ala371Thr	p.A371T	ENST00000268035	NM_000875.3	371	Gct/Act						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44922929	44922930	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0013361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	40	506	0	ENST00000377967.4:c.1793_1794del	p.Ile598AsnfsTer6	p.I598Nfs*6	ENST00000377967	NM_021140.2	597	cAT/c						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	198	429	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68857407	68857407	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0014830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	244	471	0	ENST00000261769.5:c.2042T>G	p.Leu681Ter	p.L681*	ENST00000261769	NM_004360.3	681	tTa/tGa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	46	449	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	32	393	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0014115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	138	403	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48593477	48593477	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	120	444	0	ENST00000342988.3:c.1228C>T	p.Gln410Ter	p.Q410*	ENST00000342988	NM_005359.5	410	Cag/Tag						NEWRECORD																																																																									
RAD54L	8438	MSKCC	GRCh37	1	46715735	46715735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	144	655	0	ENST00000371975.4:c.154C>T	p.Arg52Trp	p.R52W	ENST00000371975	NM_003579.3	52	Cgg/Tgg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108141792	108141792	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0014115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	127	547	0	ENST00000278616.4:c.2840A>G	p.Tyr947Cys	p.Y947C	ENST00000278616	NM_000051.3	947	tAt/tGt						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56492719	56492719	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	320	617	0	ENST00000407977.2:c.220G>T	p.Glu74Ter	p.E74*	ENST00000407977		74	Gaa/Taa						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198257856	198257856	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	149	636	0	ENST00000335508.6:c.3596T>G	p.Val1199Gly	p.V1199G	ENST00000335508	NM_012433.2	1199	gTt/gGt						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39933888	39933892	+	frameshift_variant	Frame_Shift_Del	DEL	GACTG	GACTG	-			P-0014115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	318	721	0	ENST00000378444.4:c.707_711del	p.Pro236LeufsTer63	p.P236Lfs*63	ENST00000378444	NM_001123385.1	236	cCAGTC/c						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47041648	47041648	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	273	627	0	ENST00000329236.7:c.1639G>T	p.Gly547Ter	p.G547*	ENST00000329236	NM_001204466.1	547	Gga/Tga						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66943658	66943658	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	103	767	0	ENST00000374690.3:c.2738A>G	p.Lys913Arg	p.K913R	ENST00000374690	NM_000044.3	913	aAg/aGg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	74	776	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68845682	68845682	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	74	865	1	ENST00000261769.5:c.928G>T	p.Glu310Ter	p.E310*	ENST00000261769	NM_004360.3	310	Gag/Tag						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	66	851	3	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	61	818	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg						NEWRECORD																																																																									
GATA2	2624	MSKCC	GRCh37	3	128200073	128200073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	69	925	1	ENST00000341105.2:c.1232C>T	p.Ala411Val	p.A411V	ENST00000341105	NM_032638.4	411	gCg/gTg						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8111472	8111473	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0015005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	58	709	0	ENST00000346208.3:c.959_960del	p.Cys320SerfsTer31	p.C320Sfs*31	ENST00000346208		320	TGt/t						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67645923	67645923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	43	769	0	ENST00000264010.4:c.851A>G	p.His284Arg	p.H284R	ENST00000264010	NM_006565.3	284	cAc/cGc						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123229240	123229240	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	17	151	3	ENST00000218089.9:c.3724C>T	p.Arg1242Ter	p.R1242*	ENST00000218089	NM_001042749.1	1242	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128163	112128164	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	TT			P-0012100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	129	451	1	ENST00000257430.4:c.666_667delinsTT	p.Gln222_Gln223delinsHisTer	p.Q222_Q223delinsH*	ENST00000257430	NM_000038.5	222	caGCaa/caTTaa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0012100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	167	563	2	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32178663	32178663	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144069425		P-0012100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	154	447	2	ENST00000375023.3:c.2731G>A	p.Gly911Ser	p.G911S	ENST00000375023	NM_004557.3	911	Ggc/Agc						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139410162	139410162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	76	174	1	ENST00000277541.6:c.1676C>T	p.Thr559Met	p.T559M	ENST00000277541	NM_017617.3	559	aCg/aTg						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63851531	63851531	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	120	203	0	ENST00000279873.7:c.2309A>G	p.Asn770Ser	p.N770S	ENST00000279873	NM_032199.2	770	aAt/aGt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0012100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	225	366	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46231144	46231144	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	123	498	0	ENST00000334344.6:c.1064T>A	p.Met355Lys	p.M355K	ENST00000334344	NM_152641.2	355	aTg/aAg						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114711025	114711025	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	171	311	0	ENST00000543371.1:c.250del	p.Glu84LysfsTer24	p.E84Kfs*24	ENST00000543371	NM_001198531.1	83	ttG/tt						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156843506	156843506	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1434897221		P-0010661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	80	413	0	ENST00000524377.1:c.932C>T	p.Pro311Leu	p.P311L	ENST00000524377	NM_002529.3	311	cCg/cTg						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30713865	30713865	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	121	481	0	ENST00000359013.4:c.1265A>T	p.Asp422Val	p.D422V	ENST00000359013	NM_001024847.2	422	gAc/gTc						NEWRECORD																																																																									
PIM1	5292	MSKCC	GRCh37	6	37140862	37140862	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	127	536	0	ENST00000373509.5:c.698A>G	p.Tyr233Cys	p.Y233C	ENST00000373509	NM_002648.3	233	tAt/tGt						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98212128	98212128	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	76	422	0	ENST00000331920.6:c.3544C>G	p.Pro1182Ala	p.P1182A	ENST00000331920	NM_000264.3	1182	Cct/Gct						NEWRECORD																																																																									
ARAF	369	MSKCC	GRCh37	X	47428244	47428244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	40	549	0	ENST00000377045.4:c.1204G>A	p.Asp402Asn	p.D402N	ENST00000377045	NM_001654.4	402	Gac/Aac						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39922904	39922905	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0010661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	114	669	0	ENST00000378444.4:c.3803_3804del	p.Arg1268LysfsTer8	p.R1268Kfs*8	ENST00000378444	NM_001123385.1	1268	aGA/a						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578466	7578466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	61	444	0	ENST00000269305.4:c.464C>A	p.Thr155Asn	p.T155N	ENST00000269305	NM_001126112.2	155	aCc/aAc						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37879831	37879831	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	47	414	0	ENST00000269571.5:c.2126A>T	p.Gln709Leu	p.Q709L	ENST00000269571		709	cAg/cTg						NEWRECORD																																																																									
CTLA4	1493	MSKCC	GRCh37	2	204737477	204737477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	58	488	0	ENST00000302823.3:c.614C>T	p.Pro205Leu	p.P205L	ENST00000302823	NM_005214.4	205	cCc/cTc						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1294198	1294198	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	93	479	0	ENST00000310581.5:c.803G>C	p.Arg268Pro	p.R268P	ENST00000310581	NM_198253.2	268	cGt/cCt						NEWRECORD																																																																									
IRF4	3662	MSKCC	GRCh37	6	395870	395870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1165	83	698	1	ENST00000380956.4:c.427G>A	p.Asp143Asn	p.D143N	ENST00000380956	NM_001195286.1	143	Gac/Aac						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70451038	70451038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	36	405	3	ENST00000373644.4:c.5878G>T	p.Asp1960Tyr	p.D1960Y	ENST00000373644	NM_030625.2	1960	Gat/Tat						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189526294	189526295	+	missense_variant	Missense_Mutation	DNP	CG	CG	TT			P-0010785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	33	295	2	ENST00000264731.3:c.558_559delinsTT	p.Ala187Ser	p.A187S	ENST00000264731	NM_003722.4	186	acCGcc/acTTcc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G	rs587782272		P-0011470-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	436	553	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332							NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151849870	151849870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011470-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	112	463	0	ENST00000262189.6:c.12446C>T	p.Pro4149Leu	p.P4149L	ENST00000262189	NM_170606.2	4149	cCa/cTa						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68845727	68845727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011470-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	190	432	1	ENST00000261769.5:c.973G>A	p.Val325Ile	p.V325I	ENST00000261769	NM_004360.3	325	Gtc/Atc						NEWRECORD																																																																									
AKT2	208	MSKCC	GRCh37	19	40747892	40747892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011470-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	186	589	1	ENST00000392038.2:c.526C>A	p.Arg176Ser	p.R176S	ENST00000392038	NM_001626.4	176	Cgc/Agc						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48881492	48881502	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAGAGCTTG	GAGAGAGCTTG	-			P-0011470-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	177	460	0	ENST00000267163.4:c.215_225del	p.Glu72ValfsTer34	p.E72Vfs*34	ENST00000267163	NM_000321.2	72	GAGAGAGCTTGg/g						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0007185-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			788	50	754	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174268	112174268	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007185-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			580	70	611	1	ENST00000257430.4:c.2977A>T	p.Lys993Ter	p.K993*	ENST00000257430	NM_000038.5	993	Aag/Tag						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152332799	152332799	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007185-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			720	105	804	2	ENST00000206249.3:c.1105G>T	p.Asp369Tyr	p.D369Y	ENST00000206249	NM_000125.3	369	Gat/Tat						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114925597	114925597	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007185-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			996	72	1172	1	ENST00000543371.1:c.1679del	p.Pro560GlnfsTer42	p.P560Qfs*42	ENST00000543371	NM_001198531.1	559	Ccc/cc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579420	7579427	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGGCTG	GGGGGCTG	-			P-0007185-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			565	46	526	0	ENST00000269305.4:c.260_267del	p.Pro87LeufsTer59	p.P87Lfs*59	ENST00000269305	NM_001126112.2	87	cCAGCCCCC/c						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180036927	180036927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007185-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			926	60	737	1	ENST00000261937.6:c.3785C>T	p.Pro1262Leu	p.P1262L	ENST00000261937	NM_182925.4	1262	cCa/cTa						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117645555	117645555	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007185-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			893	51	799	0	ENST00000368508.3:c.5581A>C	p.Ser1861Arg	p.S1861R	ENST00000368508	NM_002944.2	1861	Agt/Cgt						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50467873	50467873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007185-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			410	30	358	1	ENST00000331340.3:c.1108G>A	p.Val370Met	p.V370M	ENST00000331340	NM_006060.4	370	Gtg/Atg						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88476376	88476376	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007185-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			510	29	474	0	ENST00000360948.2:c.1756C>T	p.Gln586Ter	p.Q586*	ENST00000360948	NM_001012338.2	586	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0013063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	224	519	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0013063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	253	505	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098962	178098962	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	264	409	0	ENST00000397062.3:c.83T>C	p.Ile28Thr	p.I28T	ENST00000397062	NM_006164.4	28	aTa/aCa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8331643	8331643	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1324	79	811	0	ENST00000356435.5:c.5473G>C	p.Gly1825Arg	p.G1825R	ENST00000356435		1825	Ggc/Cgc						NEWRECORD																																																																									
MLH1	4292	MSKCC	GRCh37	3	37070325	37070325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	67	714	2	ENST00000231790.2:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000231790	NM_000249.3	487	cGa/cAa						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11205024	11205024	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0013063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1150	296	730	0	ENST00000361445.4:c.4764+1G>C		p.X1588_splice	ENST00000361445	NM_004958.3	1588							NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243828083	243828083	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	106	514	0	ENST00000263826.5:c.275C>A	p.Pro92Gln	p.P92Q	ENST00000263826	NM_005465.4	92	cCa/cAa						NEWRECORD																																																																									
FOXO1	2308	MSKCC	GRCh37	13	41239908	41239908	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	116	210	0	ENST00000379561.5:c.442C>T	p.Gln148Ter	p.Q148*	ENST00000379561	NM_002015.3	148	Cag/Tag						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9916256	9916256	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	200	625	2	ENST00000330684.3:c.2033C>A	p.Pro678Gln	p.P678Q	ENST00000330684	NM_001134407.1	678	cCa/cAa						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29556276	29556276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	297	714	0	ENST00000358273.4:c.2643G>A	p.Met881Ile	p.M881I	ENST00000358273	NM_001042492.2	881	atG/atA						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41574427	41574427	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	120	542	0	ENST00000263253.7:c.6712A>C	p.Asn2238His	p.N2238H	ENST00000263253	NM_001429.3	2238	Aat/Cat						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	85	454	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0012224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	89	802	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207078	1207078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	275	486	3	ENST00000326873.7:c.166G>T	p.Gly56Trp	p.G56W	ENST00000326873	NM_000455.4	56	Ggg/Tgg						NEWRECORD																																																																									
CBL	867	MSKCC	GRCh37	11	119148875	119148875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	161	233	1	ENST00000264033.4:c.1096-1G>T		p.X366_splice	ENST00000264033	NM_005188.3	366							NEWRECORD																																																																									
IRS1	3667	MSKCC	GRCh37	2	227660660	227660660	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	113	365	0	ENST00000305123.5:c.2795G>T	p.Arg932Ile	p.R932I	ENST00000305123	NM_005544.2	932	aGa/aTa						NEWRECORD																																																																									
PDCD1	5133	MSKCC	GRCh37	2	242794461	242794461	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	105	359	0	ENST00000334409.5:c.481A>T	p.Arg161Trp	p.R161W	ENST00000334409	NM_005018.2	161	Agg/Tgg						NEWRECORD																																																																									
SHQ1	55164	MSKCC	GRCh37	3	72861919	72861919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	122	416	0	ENST00000325599.8:c.963G>T	p.Met321Ile	p.M321I	ENST00000325599	NM_018130.2	321	atG/atT						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2972201	2972201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	127	427	2	ENST00000396946.4:c.1538C>A	p.Pro513His	p.P513H	ENST00000396946	NM_032415.4	513	cCc/cAc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8319853	8319853	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	138	555	0	ENST00000356435.5:c.5648G>T	p.Arg1883Leu	p.R1883L	ENST00000356435		1883	cGa/cTa						NEWRECORD																																																																									
CCND1	595	MSKCC	GRCh37	11	69456232	69456232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	238	420	0	ENST00000227507.2:c.151G>A	p.Glu51Lys	p.E51K	ENST00000227507	NM_053056.2	51	Gag/Aag						NEWRECORD																																																																									
PDPK1	5170	MSKCC	GRCh37	16	2645794	2645794	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	142	463	0	ENST00000342085.4:c.1344G>T	p.Trp448Cys	p.W448C	ENST00000342085	NM_002613.4	448	tgG/tgT						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72992190	72992190	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	159	578	0	ENST00000268489.5:c.1855C>G	p.His619Asp	p.H619D	ENST00000268489	NM_006885.3	619	Cat/Gat						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602442	10602442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	246	372	0	ENST00000171111.5:c.1136G>A	p.Gly379Asp	p.G379D	ENST00000171111	NM_203500.1	379	gGc/gAc						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11138491	11138491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	295	421	0	ENST00000344626.4:c.3247G>A	p.Glu1083Lys	p.E1083K	ENST00000344626	NM_003072.3	1083	Gag/Aag						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9984908	9984909	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	150	592	0	ENST00000330684.3:c.1056_1057delinsTT	p.Glu352_Glu353delinsAspTer	p.E352_E353delinsD*	ENST00000330684	NM_001134407.1	352	gaGGaa/gaTTaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	158	663	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	30143174	30143174	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	68	425	0	ENST00000389048.3:c.352G>T	p.Ala118Ser	p.A118S	ENST00000389048	NM_004304.4	118	Gca/Tca						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149447852	149447852	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	101	659	0	ENST00000286301.3:c.1552G>C	p.Val518Leu	p.V518L	ENST00000286301	NM_005211.3	518	Gtg/Ctg						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50358684	50358684	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	47	223	0	ENST00000331340.3:c.27G>C	p.Met9Ile	p.M9I	ENST00000331340	NM_006060.4	9	atG/atC						NEWRECORD																																																																									
NBN	4683	MSKCC	GRCh37	8	90967671	90967671	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	83	500	0	ENST00000265433.3:c.1237A>C	p.Asn413His	p.N413H	ENST00000265433	NM_002485.4	413	Aat/Cat						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133759630	133759630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	129	736	0	ENST00000318560.5:c.1953G>T	p.Leu651Phe	p.L651F	ENST00000318560	NM_005157.4	651	ttG/ttT						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108143545	108143545	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1213	137	619	0	ENST00000278616.4:c.3250C>T	p.Gln1084Ter	p.Q1084*	ENST00000278616	NM_000051.3	1084	Caa/Taa						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89839682	89839682	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	82	615	0	ENST00000389301.3:c.2011G>C	p.Asp671His	p.D671H	ENST00000389301	NM_000135.2	671	Gat/Cat						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29559830	29559830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	77	595	1	ENST00000358273.4:c.3427C>T	p.His1143Tyr	p.H1143Y	ENST00000358273	NM_001042492.2	1143	Cac/Tac						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29653151	29653151	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	76	373	0	ENST00000358273.4:c.5149G>T	p.Glu1717Ter	p.E1717*	ENST00000358273	NM_001042492.2	1717	Gag/Tag						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29664506	29664506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1063	123	536	0	ENST00000358273.4:c.6548G>T	p.Arg2183Leu	p.R2183L	ENST00000358273	NM_001042492.2	2183	cGg/cTg						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7163146	7163146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1520	80	869	0	ENST00000302850.5:c.1926G>T	p.Trp642Cys	p.W642C	ENST00000302850	NM_000208.2	642	tgG/tgT						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40757396	40757396	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1325	98	756	1	ENST00000373198.4:c.2902G>T	p.Asp968Tyr	p.D968Y	ENST00000373198	NM_133170.3	968	Gac/Tac						NEWRECORD																																																																									
CDC73	79577	MSKCC	GRCh37	1	193219805	193219805	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	59	347	0	ENST00000367435.3:c.1560del		p.X520_splice	ENST00000367435	NM_024529.4	520							NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212537896	212537897	+	missense_variant	Missense_Mutation	DNP	TG	TG	GT			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	69	536	0	ENST00000342788.4:c.1708_1709delinsAC	p.His570Thr	p.H570T	ENST00000342788	NM_005235.2	570	CAt/ACt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610118	10610121	+	frameshift_variant	Frame_Shift_Del	DEL	CCAC	CCAC	GTA			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1044	156	666	0	ENST00000171111.5:c.589_592delinsTAC	p.Val197TyrfsTer33	p.V197Yfs*33	ENST00000171111	NM_203500.1	197	GTGGag/TACag						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68857532	68857532	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	C			P-0013640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	85	274	0	ENST00000261769.5:c.2164+3A>C		p.X722_splice	ENST00000261769	NM_004360.3	722							NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0013534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	81	533	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47044942	47044943	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	TT			P-0013534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	65	544	2	ENST00000329236.7:c.2034_2035delinsTT	p.Trp678_Gln679delinsCysTer	p.W678_Q679delinsC*	ENST00000329236	NM_001204466.1	678	tgGCag/tgTTag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578455	7578460	+	inframe_deletion	In_Frame_Del	DEL	CGCGGA	CGCGGA	-			P-0011255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	261	437	0	ENST00000269305.4:c.470_475delTCCGCG	p.Val157_Arg158del	p.V157_R158del	ENST00000269305	NM_001126112.2	157	gTCCGCGcc/gcc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0011255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	117	517	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0011255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	79	354	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55371941	55371941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	395	217	0	ENST00000297316.4:c.631G>A	p.Ala211Thr	p.A211T	ENST00000297316	NM_022454.3	211	Gcg/Acg						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21555714	21555714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1384	369	660	0	ENST00000382592.4:c.2556C>A	p.Asp852Glu	p.D852E	ENST00000382592	NM_014572.2	852	gaC/gaA						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32911779	32911779	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1153	178	862	0	ENST00000380152.3:c.3287A>G	p.Asp1096Gly	p.D1096G	ENST00000380152		1096	gAt/gGt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	122	370	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108128265	108128265	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	102	352	0	ENST00000278616.4:c.2308G>T	p.Glu770Ter	p.E770*	ENST00000278616	NM_000051.3	770	Gaa/Taa						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108218037	108218037	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	50	289	0	ENST00000278616.4:c.8616T>A	p.His2872Gln	p.H2872Q	ENST00000278616	NM_000051.3	2872	caT/caA						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32910538	32910538	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	37	233	0	ENST00000380152.3:c.2046C>G	p.Ile682Met	p.I682M	ENST00000380152		682	atC/atG						NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103514445	103514445	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	26	198	2	ENST00000355739.4:c.946G>T	p.Gly316Cys	p.G316C	ENST00000355739	NM_000123.3	316	Ggc/Tgc						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42054416	42054416	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	66	335	0	ENST00000219905.7:c.7600G>T	p.Gly2534Ter	p.G2534*	ENST00000219905	NM_001164273.1	2534	Gga/Tga						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88678620	88678620	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	33	222	0	ENST00000360948.2:c.916C>A	p.Arg306Ser	p.R306S	ENST00000360948	NM_001012338.2	306	Cgt/Agt						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2133711	2133711	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	84	471	0	ENST00000219476.3:c.3899T>C	p.Met1300Thr	p.M1300T	ENST00000219476	NM_000548.3	1300	aTg/aCg						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89874771	89874771	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	112	423	0	ENST00000389301.3:c.527C>G	p.Ser176Cys	p.S176C	ENST00000389301	NM_000135.2	176	tCt/tGt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610446	10610449	+	frameshift_variant	Frame_Shift_Del	DEL	TGCA	TGCA	-			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	190	486	0	ENST00000171111.5:c.261_264del	p.Ala88ArgfsTer68	p.A88Rfs*68	ENST00000171111	NM_203500.1	87	gaTGCA/ga						NEWRECORD																																																																									
MLL4	9757	MSKCC	GRCh37	19	36217179	36217179	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1392	153	547	0	ENST00000222270.7:c.3928C>G	p.Pro1310Ala	p.P1310A	ENST00000222270	NM_014727.1	1310	Cca/Gca						NEWRECORD																																																																									
ERCC2	2068	MSKCC	GRCh37	19	45868193	45868193	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1401	138	652	0	ENST00000391945.4:c.497G>T	p.Arg166Leu	p.R166L	ENST00000391945	NM_000400.3	166	cGt/cTt						NEWRECORD																																																																									
CUL3	8452	MSKCC	GRCh37	2	225422431	225422431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	72	389	0	ENST00000264414.4:c.209G>C	p.Gly70Ala	p.G70A	ENST00000264414	NM_003590.4	70	gGa/gCa						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89468438	89468438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	133	291	0	ENST00000336596.2:c.1972G>T	p.Gly658Cys	p.G658C	ENST00000336596	NM_005233.5	658	Ggc/Tgc						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106197588	106197588	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	132	284	0	ENST00000380013.4:c.5921G>T	p.Arg1974Met	p.R1974M	ENST00000380013	NM_001127208.2	1974	aGg/aTg						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143159150	143159150	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	22	215	0	ENST00000262992.4:c.703G>T	p.Val235Leu	p.V235L	ENST00000262992	NM_001101669.1	235	Gta/Tta						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27102076	27102076	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	68	433	1	ENST00000324856.7:c.5002G>T	p.Glu1668Ter	p.E1668*	ENST00000324856	NM_006015.4	1668	Gag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	108	406	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47041259	47041259	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	142	717	0	ENST00000329236.7:c.1453C>T	p.Gln485Ter	p.Q485*	ENST00000329236	NM_001204466.1	485	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579514	7579514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	88	464	0	ENST00000269305.4:c.173delC	p.Pro58GlnfsTer65	p.P58Qfs*65	ENST00000269305	NM_001126112.2	58	cCa/ca						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115112298	115112298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	17	59	0	ENST00000257566.3:c.1442C>T	p.Pro481Leu	p.P481L	ENST00000257566	NM_016569.3	481	cCg/cTg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	480	509	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	577	627	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70117755	70117755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	315	581	1	ENST00000245479.2:c.223G>A	p.Glu75Lys	p.E75K	ENST00000245479	NM_000346.3	75	Gag/Aag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	99	484	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220694	1220694	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	100	526	0	ENST00000326873.7:c.712A>T	p.Ile238Phe	p.I238F	ENST00000326873	NM_000455.4	238	Atc/Ttc						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2979527	2979527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	107	642	0	ENST00000396946.4:c.720G>T	p.Glu240Asp	p.E240D	ENST00000396946	NM_032415.4	240	gaG/gaT						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133215710	133215710	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0010632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	81	447	1	ENST00000320574.5:c.5552+1G>T		p.X1851_splice	ENST00000320574	NM_006231.2	1851							NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32911800	32911800	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	171	877	0	ENST00000380152.3:c.3308T>C	p.Leu1103Ser	p.L1103S	ENST00000380152		1103	tTa/tCa						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47684689	47684689	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	86	546	0	ENST00000347630.2:c.760A>T	p.Met254Leu	p.M254L	ENST00000347630	NM_001007230.1	254	Atg/Ttg						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610090	10610090	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	100	534	0	ENST00000171111.5:c.620T>G	p.Ile207Ser	p.I207S	ENST00000171111	NM_203500.1	207	aTc/aGc						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610100	10610100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	111	568	0	ENST00000171111.5:c.610C>G	p.Arg204Gly	p.R204G	ENST00000171111	NM_203500.1	204	Cgg/Ggg						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68835596	68835596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	229	560	0	ENST00000261769.5:c.187C>T	p.Arg63Ter	p.R63*	ENST00000261769	NM_004360.3	63	Cga/Tga						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16262645	16262645	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	111	366	0	ENST00000375759.3:c.9910C>T	p.Gln3304Ter	p.Q3304*	ENST00000375759	NM_015001.2	3304	Caa/Taa						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66217127	66217127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	81	676	4	ENST00000273854.3:c.2488G>A	p.Glu830Lys	p.E830K	ENST00000273854	NM_004439.5	830	Gag/Aag						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8517857	8517857	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	151	652	0	ENST00000356435.5:c.1534C>T	p.Gln512Ter	p.Q512*	ENST00000356435		512	Cag/Tag						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134644709	134644709	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	68	478	0	ENST00000398015.3:c.110A>G	p.Asn37Ser	p.N37S	ENST00000398015	NM_004441.4	37	aAt/aGt						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	93974323	93974323	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	144	859	0	ENST00000369303.4:c.1731C>G	p.Ile577Met	p.I577M	ENST00000369303	NM_004440.3	577	atC/atG						NEWRECORD																																																																									
ETV1	2115	MSKCC	GRCh37	7	13975523	13975523	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0012855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	28	215	0	ENST00000405192.2:c.366-2A>T		p.X122_splice	ENST00000405192	NM_001163147.1	122							NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21549104	21549104	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	85	684	0	ENST00000382592.4:c.3172C>G	p.Pro1058Ala	p.P1058A	ENST00000382592	NM_014572.2	1058	Cct/Gct						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48954220	48954220	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	229	505	1	ENST00000267163.4:c.1421G>A	p.Ser474Asn	p.S474N	ENST00000267163	NM_000321.2	474	aGc/aAc						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	348114	348114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	80	563	0	ENST00000262320.3:c.1392G>T	p.Glu464Asp	p.E464D	ENST00000262320	NM_003502.3	464	gaG/gaT						NEWRECORD																																																																									
CD79A	973	MSKCC	GRCh37	19	42383608	42383608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	55	792	0	ENST00000221972.3:c.383C>T	p.Pro128Leu	p.P128L	ENST00000221972	NM_021601.3	128	cCg/cTg						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41564538	41564538	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	103	768	0	ENST00000263253.7:c.3960G>C	p.Glu1320Asp	p.E1320D	ENST00000263253	NM_001429.3	1320	gaG/gaC						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577145	7577154	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GTAGATTACC	GTAGATTACC	-			P-0012855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	319	804	3	ENST00000269305.4:c.784_793del	p.Gly262TrpfsTer80	p.G262Wfs*80	ENST00000269305	NM_001126112.2	262	GGTAATCTACtg/tg						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41197783	41197784	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0012855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	228	827	1	ENST00000357654.3:c.5503_5504delinsTT	p.Arg1835Leu	p.R1835L	ENST00000357654	NM_007294.3	1835	CGa/TTa						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0010853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	30	168	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857895	9857895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	53	398	2	ENST00000330684.3:c.3506G>A	p.Arg1169Gln	p.R1169Q	ENST00000330684	NM_001134407.1	1169	cGg/cAg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	101	322	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0011124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	225	490	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	41	140	1	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag						NEWRECORD																																																																									
FANCC	2176	MSKCC	GRCh37	9	97934342	97934342	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	119	396	0	ENST00000289081.3:c.433T>G	p.Tyr145Asp	p.Y145D	ENST00000289081	NM_000136.2	145	Tac/Gac						NEWRECORD																																																																									
IGF2	3481	MSKCC	GRCh37	11	2161391	2161391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	104	477	0	ENST00000434045.2:c.136C>T	p.Arg46Cys	p.R46C	ENST00000434045	NM_001127598.1	46	Cgc/Tgc						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46243551	46243551	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	69	266	0	ENST00000334344.6:c.1904C>A	p.Ser635Ter	p.S635*	ENST00000334344	NM_152641.2	635	tCa/tAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0014328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	846	490	1	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48951058	48951059	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0014328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	159	252	0	ENST00000267163.4:c.1220_1221del	p.Cys407TyrfsTer20	p.C407Yfs*20	ENST00000267163	NM_000321.2	407	tGC/t						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88472561	88472561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	539	475	1	ENST00000360948.2:c.1994C>T	p.Ser665Leu	p.S665L	ENST00000360948	NM_001012338.2	665	tCg/tTg						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176696613	176696613	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	308	221	0	ENST00000439151.2:c.5314G>T	p.Ala1772Ser	p.A1772S	ENST00000439151	NM_022455.4	1772	Gct/Tct						NEWRECORD																																																																									
HIST1H3I	8354	MSKCC	GRCh37	6	27840093	27840093	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0014328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	249	193	0	ENST00000328488.2:c.1A>G	p.Met1?	p.M1?	ENST00000328488	NM_003533.2	1	Atg/Gtg						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101908874	101908874	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	718	548	0	ENST00000374994.4:c.1238G>T	p.Arg413Leu	p.R413L	ENST00000374994	NM_004612.2	413	cGa/cTa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1202793339		P-0012858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	210	717	1	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187							NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15271707	15271707	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0012858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	898	1041	0	ENST00000263388.2:c.6732C>G	p.Tyr2244Ter	p.Y2244*	ENST00000263388	NM_000435.2	2244	taC/taG						NEWRECORD																																																																									
TOP1	7150	MSKCC	GRCh37	20	39721200	39721200	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	44	678	0	ENST00000361337.2:c.704del	p.Pro235GlnfsTer13	p.P235Qfs*13	ENST00000361337	NM_003286.2	235	Cca/ca						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098975	178098975	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1328994103		P-0010355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	104	340	0	ENST00000397062.3:c.70T>C	p.Trp24Arg	p.W24R	ENST00000397062	NM_006164.4	24	Tgg/Cgg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	138	351	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49427306	49427306	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	111	274	0	ENST00000301067.7:c.11182A>G	p.Met3728Val	p.M3728V	ENST00000301067	NM_003482.3	3728	Atg/Gtg						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23634293	23634293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45551636		P-0010355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	166	571	1	ENST00000261584.4:c.2993G>A	p.Gly998Glu	p.G998E	ENST00000261584	NM_024675.3	998	gGa/gAa						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89857917	89857917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	82	255	0	ENST00000389301.3:c.1253C>T	p.Ala418Val	p.A418V	ENST00000389301	NM_000135.2	418	gCa/gTa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0010355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	139	396	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63411459	63411461	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0010355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1191	231	814	0	ENST00000330258.3:c.1706_1708del	p.Leu569del	p.L569del	ENST00000330258	NM_152424.3	569	tTGTat/tat						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0010554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	319	402	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0010554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	70	252	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72830596	72830596	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1116	307	1070	0	ENST00000268489.5:c.5985C>G	p.Ile1995Met	p.I1995M	ENST00000268489	NM_006885.3	1995	atC/atG						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	273	395	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0010056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	282	434	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt						NEWRECORD																																																																									
EIF4E	1977	MSKCC	GRCh37	4	99808239	99808239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	309	678	0	ENST00000280892.6:c.450G>T	p.Trp150Cys	p.W150C	ENST00000280892	NM_001130678.1	150	tgG/tgT						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5029801	5029801	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	235	396	1	ENST00000381652.3:c.245A>T	p.His82Leu	p.H82L	ENST00000381652	NM_004972.3	82	cAt/cTt						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53228325	53228325	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	175	554	0	ENST00000375401.3:c.2077G>T	p.Glu693Ter	p.E693*	ENST00000375401	NM_004187.3	693	Gag/Tag						NEWRECORD																																																																									
NKX2-1	7080	MSKCC	GRCh37	14	36986786	36986920	+	inframe_deletion	In_Frame_Del	DEL	CTGGCACGGTTTGCCGTCTTTCACCAGGACCGGCACCGCCACGCGTCGCGGCGACTGCTGCTGAGCCTGTTGCTGCTGCGGGCACCCGGTGCCCCCGCCGCCCCCGCCGCCGCCGCTGTCCTGCTGCAGTTGCTG	CTGGCACGGTTTGCCGTCTTTCACCAGGACCGGCACCGCCACGCGTCGCGGCGACTGCTGCTGAGCCTGTTGCTGCTGCGGGCACCCGGTGCCCCCGCCGCCCCCGCCGCCGCCGCTGTCCTGCTGCAGTTGCTG	-			P-0010056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	387	107	0	ENST00000354822.5:c.769_903del	p.Gln257_Gln301del	p.Q257_Q301del	ENST00000354822	NM_001079668.2	257	CAGCAACTGCAGCAGGACAGCGGCGGCGGCGGGGGCGGCGGGGGCACCGGGTGCCCGCAGCAGCAACAGGCTCAGCAGCAGTCGCCGCGACGCGTGGCGGTGCCGGTCCTGGTGAAAGACGGCAAACCGTGCCAG/-						NEWRECORD																																																																									
MALT1	10892	MSKCC	GRCh37	18	56400646	56400647	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0010056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	319	655	1	ENST00000348428.3:c.1240_1241delinsTT	p.Gly414Leu	p.G414L	ENST00000348428	NM_006785.3	414	GGa/TTa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0014406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	117	357	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA						NEWRECORD																																																																									
CBFB	865	MSKCC	GRCh37	16	67063667	67063667	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	129	443	0	ENST00000412916.2:c.116A>G	p.Glu39Gly	p.E39G	ENST00000412916		39	gAa/gGa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0010118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	98	342	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212251754	212251754	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	34	407	0	ENST00000342788.4:c.3305T>G	p.Phe1102Cys	p.F1102C	ENST00000342788	NM_005235.2	1102	tTt/tGt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	57	574	0	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32163284	32163284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	106	766	0	ENST00000375023.3:c.5942C>T	p.Pro1981Leu	p.P1981L	ENST00000375023	NM_004557.3	1981	cCt/cTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0014067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	44	499	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	201	475	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
ETV1	2115	MSKCC	GRCh37	7	13935508	13935508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	37	317	1	ENST00000405192.2:c.1348G>A	p.Glu450Lys	p.E450K	ENST00000405192	NM_001163147.1	450	Gaa/Aaa						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189612028	189612028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	40	464	0	ENST00000264731.3:c.1780C>T	p.Arg594Ter	p.R594*	ENST00000264731	NM_003722.4	594	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578485	7578485	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	181	543	0	ENST00000269305.4:c.445del	p.Ser149ProfsTer21	p.S149Pfs*21	ENST00000269305	NM_001126112.2	149	Tcc/cc						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106509060	106509060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	53	506	0	ENST00000359195.3:c.1054G>A	p.Val352Met	p.V352M	ENST00000359195	NM_002649.2	352	Gtg/Atg						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89521733	89521733	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	43	497	0	ENST00000336596.2:c.2810A>T	p.Tyr937Phe	p.Y937F	ENST00000336596	NM_005233.5	937	tAc/tTc						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89521720	89521724	+	missense_variant	Missense_Mutation	ONP	ACGGG	ACGGG	CCGGT			P-0013907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	49	550	0	ENST00000336596.2:c.2797_2801delinsCCGGT	p.Thr933_Gly934delinsProVal	p.T933_G934delinsPV	ENST00000336596	NM_005233.5	933	ACGGGt/CCGGTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0010669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	199	334	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307							NEWRECORD																																																																									
MST1R	4486	MSKCC	GRCh37	3	49934818	49934818	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	369	628	0	ENST00000296474.3:c.2078T>C	p.Phe693Ser	p.F693S	ENST00000296474	NM_002447.2	693	tTt/tCt						NEWRECORD																																																																									
E2F3	1871	MSKCC	GRCh37	6	20487032	20487032	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0010669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	235	311	0	ENST00000346618.3:c.997G>C	p.Glu333Gln	p.E333Q	ENST00000346618	NM_001949.4	333	Gag/Cag						NEWRECORD																																																																									
XIAP	331	MSKCC	GRCh37	X	123020254	123020254	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	141	417	0	ENST00000355640.3:c.742A>T	p.Arg248Trp	p.R248W	ENST00000355640		248	Agg/Tgg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	124	399	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0010383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	184	576	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577530	7577530	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	207	491	0	ENST00000269305.4:c.751A>T	p.Ile251Phe	p.I251F	ENST00000269305	NM_001126112.2	251	Atc/Ttc						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266450	41266450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	49	440	0	ENST00000349496.5:c.247G>A	p.Asp83Asn	p.D83N	ENST00000349496	NM_001904.3	83	Gat/Aat						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575689	48575689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	94	433	0	ENST00000342988.3:c.449G>T	p.Ser150Ile	p.S150I	ENST00000342988	NM_005359.5	150	aGt/aTt						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89445069	89445767	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAATGGGATCATATTGGACTACGAGGTCAAATACTATGAAAAGGTGGGGAAACAATGTTTAAGGGTTGGGCTGTGTAGGCAAGAAGCTGTTTCCTCATGAGCTGTGCTCTTGCAAAGAAACCAGTGACATTCCTGGTAAATGGTAGAGCACTGTTTAGAACTGTGGCCCTGTGACCCCTTTGATTTATTGGTAGAGGAAGGTTTAGAAAGAATCTTGTTGAATACCCCCTATTCTACAGCAATAAACAACATCAAAGATGCCACTGCCAACTTAATCCAGTTACTTATGGCAATAGCATGACATTTATCTCCCTTTACACCAAGACCCCTACTCTACCAACTATTTTATTGTGGTTTCTTAGTCTATTTGTGAACTGTTTTTTTAGTTCATTGCCTCAAGCATCATTTCCTGACCTTCAAATTTACATGCATTTCATTCAATACAAATAGCAACATTGTGCTAGTAAGAAAAATATTGTATTATTTAACTGATGATGAAAAGATTTTCTTGACCCTGTAGAAGGAAATTTAAAAGGTTGGGGATAGATGGATAAATTTGCGTGACATAAAGTTGTGGCTTGGTAATGCAATTATTAAAAAAAATAGGCACATGGTTATTTTTACCCCAAATTTAAAAATTATTAAAAAATAGTTATGTGGTTATTTTGCCCTGAGTGGAGTGGCGAGTATTCCATCATT	TAATGGGATCATATTGGACTACGAGGTCAAATACTATGAAAAGGTGGGGAAACAATGTTTAAGGGTTGGGCTGTGTAGGCAAGAAGCTGTTTCCTCATGAGCTGTGCTCTTGCAAAGAAACCAGTGACATTCCTGGTAAATGGTAGAGCACTGTTTAGAACTGTGGCCCTGTGACCCCTTTGATTTATTGGTAGAGGAAGGTTTAGAAAGAATCTTGTTGAATACCCCCTATTCTACAGCAATAAACAACATCAAAGATGCCACTGCCAACTTAATCCAGTTACTTATGGCAATAGCATGACATTTATCTCCCTTTACACCAAGACCCCTACTCTACCAACTATTTTATTGTGGTTTCTTAGTCTATTTGTGAACTGTTTTTTTAGTTCATTGCCTCAAGCATCATTTCCTGACCTTCAAATTTACATGCATTTCATTCAATACAAATAGCAACATTGTGCTAGTAAGAAAAATATTGTATTATTTAACTGATGATGAAAAGATTTTCTTGACCCTGTAGAAGGAAATTTAAAAGGTTGGGGATAGATGGATAAATTTGCGTGACATAAAGTTGTGGCTTGGTAATGCAATTATTAAAAAAAATAGGCACATGGTTATTTTTACCCCAAATTTAAAAATTATTAAAAAATAGTTATGTGGTTATTTTGCCCTGAGTGGAGTGGCGAGTATTCCATCATT	-			P-0010383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	67	500	0	ENST00000336596.2:c.1389_1431+656del		p.X463_splice	ENST00000336596	NM_005233.5	463							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578440	7578440	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs879254249		P-0010044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	200	358	0	ENST00000269305.4:c.490A>G	p.Lys164Glu	p.K164E	ENST00000269305	NM_001126112.2	164	Aag/Gag						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28610163	28610163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	139	502	0	ENST00000241453.7:c.1327G>A	p.Ala443Thr	p.A443T	ENST00000241453	NM_004119.2	443	Gca/Aca						NEWRECORD																																																																									
MYCN	4613	MSKCC	GRCh37	2	16085875	16085875	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	139	302	0	ENST00000281043.3:c.1051A>C	p.Lys351Gln	p.K351Q	ENST00000281043	NM_005378.4	351	Aag/Cag						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87482169	87482169	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201028496		P-0010044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	74	438	0	ENST00000277120.3:c.1456G>A	p.Val486Ile	p.V486I	ENST00000277120		486	Gtt/Att						NEWRECORD																																																																									
FGF19	9965	MSKCC	GRCh37	11	69518577	69518577	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	12	168	1	ENST00000294312.3:c.68G>T	p.Arg23Leu	p.R23L	ENST00000294312	NM_005117.2	23	cGc/cTc						NEWRECORD																																																																									
FOXO1	2308	MSKCC	GRCh37	13	41134508	41134508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1230	80	950	3	ENST00000379561.5:c.1120C>A	p.Leu374Ile	p.L374I	ENST00000379561	NM_002015.3	374	Ctt/Att						NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100611132	100611132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	48	534	0	ENST00000308731.7:c.1474C>T	p.Arg492Cys	p.R492C	ENST00000308731	NM_000061.2	492	Cgc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0014733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	270	426	1	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28602329	28602329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	74	333	0	ENST00000241453.7:c.2039C>T	p.Ala680Val	p.A680V	ENST00000241453	NM_004119.2	680	gCg/gTg						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29509639	29509639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1141	283	453	1	ENST00000358273.4:c.844C>T	p.Gln282Ter	p.Q282*	ENST00000358273	NM_001042492.2	282	Cag/Tag						NEWRECORD																																																																									
FUBP1	8880	MSKCC	GRCh37	1	78422295	78422295	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	372	279	0	ENST00000370768.2:c.1667delC	p.Pro556LeufsTer109	p.P556Lfs*109	ENST00000370768	NM_003902.3	556	cCt/ct						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	10274195	10274195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	43	315	0	ENST00000330684.3:c.74C>T	p.Ala25Val	p.A25V	ENST00000330684	NM_001134407.1	25	gCg/gTg						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10597364	10597364	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1366	254	627	5	ENST00000171111.5:c.1839C>A	p.Cys613Ter	p.C613*	ENST00000171111	NM_203500.1	613	tgC/tgA						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0010722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	171	294	1				ENST00000310581	NM_198253.2								NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29562738	29562739	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0010722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	81	338	0	ENST00000358273.4:c.3822_3823del	p.Phe1275ProfsTer8	p.F1275Pfs*8	ENST00000358273	NM_001042492.2	1273	aCT/a						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295260	1295260	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0010722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	209	299	1				ENST00000310581	NM_198253.2								NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49027244	49027244	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	127	239	0	ENST00000267163.4:c.1811A>G	p.Asp604Gly	p.D604G	ENST00000267163	NM_000321.2	604	gAt/gGt						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29548909	29548909	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	64	175	0	ENST00000358273.4:c.1683G>A	p.Trp561Ter	p.W561*	ENST00000358273	NM_001042492.2	561	tgG/tgA						NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50918994	50918994	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	175	397	0	ENST00000440232.2:c.2731G>T	p.Asp911Tyr	p.D911Y	ENST00000440232	NM_002691.3	911	Gac/Tac						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116395510	116395534	+	protein_altering_variant	In_Frame_Del	DEL	TAGAGTTCTCCTTGGAAATGAGAGC	TAGAGTTCTCCTTGGAAATGAGAGC	G			P-0010722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	122	263	0	ENST00000397752.3:c.1803_1827delinsG	p.Arg602_Ser609del	p.R602_S609del	ENST00000397752	NM_000245.2	601	acTAGAGTTCTCCTTGGAAATGAGAGC/acG						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116411897	116411902	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TTTAAG	TTTAAG	A			P-0010722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	212	203	0	ENST00000397752.3:c.2888-6_2888-1delinsA		p.X963_splice	ENST00000397752	NM_000245.2	963							NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11199716	11199716	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	248	467	1	ENST00000361445.4:c.4873-1G>T		p.X1625_splice	ENST00000361445	NM_004958.3	1625							NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453132	140453132	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	211	439	0	ENST00000288602.6:c.1803A>T	p.Lys601Asn	p.K601N	ENST00000288602	NM_004333.4	601	aaA/aaT						NEWRECORD																																																																									
FGFR1	2260	MSKCC	GRCh37	8	38285951	38285951	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	77	544	1	ENST00000425967.3:c.460G>T	p.Ala154Ser	p.A154S	ENST00000425967	NM_001174067.1	154	Gct/Tct						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8341965	8341965	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	37	325	0	ENST00000356435.5:c.4675C>G	p.Arg1559Gly	p.R1559G	ENST00000356435		1559	Cgg/Ggg						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101891211	101891211	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	137	531	0	ENST00000374994.4:c.172G>T	p.Val58Phe	p.V58F	ENST00000374994	NM_004612.2	58	Gtc/Ttc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	261	489	1	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29509596	29509596	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	201	606	1	ENST00000358273.4:c.801G>A	p.Trp267Ter	p.W267*	ENST00000358273	NM_001042492.2	267	tgG/tgA						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29576006	29576006	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	77	443	0	ENST00000358273.4:c.3979G>T	p.Glu1327Ter	p.E1327*	ENST00000358273	NM_001042492.2	1327	Gaa/Taa						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2220125	2220125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	106	690	1	ENST00000398665.3:c.2710G>T	p.Val904Leu	p.V904L	ENST00000398665	NM_032482.2	904	Gtg/Ttg						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7117180	7117180	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	139	661	1	ENST00000302850.5:c.4036G>T	p.Gly1346Trp	p.G1346W	ENST00000302850	NM_000208.2	1346	Ggg/Tgg						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15281491	15281492	+	missense_variant	Missense_Mutation	DNP	CC	CC	GA			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	64	501	0	ENST00000263388.2:c.4881_4882delinsTC	p.Asp1628His	p.D1628H	ENST00000263388	NM_000435.2	1627	cgGGac/cgTCac						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15350248	15350248	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	101	751	0	ENST00000263377.2:c.3531G>T	p.Lys1177Asn	p.K1177N	ENST00000263377	NM_058243.2	1177	aaG/aaT						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63412182	63412182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	132	1009	2	ENST00000330258.3:c.985G>T	p.Gly329Cys	p.G329C	ENST00000330258	NM_152424.3	329	Ggt/Tgt						NEWRECORD																																																																									
XIAP	331	MSKCC	GRCh37	X	123020336	123020337	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	52	512	0	ENST00000355640.3:c.824_825delinsTT	p.Trp275Phe	p.W275F	ENST00000355640		275	tGG/tTT						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0014627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	70	355	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA						NEWRECORD																																																																									
CDKN1A	1026	MSKCC	GRCh37	6	36652129	36652129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34916193		P-0014627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	63	587	0	ENST00000244741.5:c.251G>A	p.Arg84Gln	p.R84Q	ENST00000244741	NM_000389.4	84	cGa/cAa						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66218789	66218789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	40	527	0	ENST00000273854.3:c.2269G>A	p.Glu757Lys	p.E757K	ENST00000273854	NM_004439.5	757	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0014627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	114	449	1	ENST00000269305.4:c.374C>A	p.Thr125Lys	p.T125K	ENST00000269305	NM_001126112.2	125	aCg/aAg						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118374648	118374648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	67	402	0	ENST00000534358.1:c.8041G>A	p.Asp2681Asn	p.D2681N	ENST00000534358	NM_005933.3	2681	Gac/Aac						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	459851	459851	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1261	91	804	0	ENST00000399788.2:c.1244C>G	p.Ser415Ter	p.S415*	ENST00000399788	NM_001042603.1	415	tCa/tGa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151873659	151873659	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142287778		P-0012046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	100	120	0	ENST00000262189.6:c.8879C>T	p.Pro2960Leu	p.P2960L	ENST00000262189	NM_170606.2	2960	cCg/cTg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	103	338	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0010330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	66	597	4	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0010330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	140	365	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0010330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	74	229	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3786682	3786682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1173	332	743	1	ENST00000262367.5:c.4529C>T	p.Ala1510Val	p.A1510V	ENST00000262367	NM_004380.2	1510	gCg/gTg						NEWRECORD																																																																									
EZH2	2146	MSKCC	GRCh37	7	148523554	148523554	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	24	350	1	ENST00000320356.2:c.899G>C	p.Cys300Ser	p.C300S	ENST00000320356	NM_004456.4	300	tGc/tCc						NEWRECORD																																																																									
EGFL7	51162	MSKCC	GRCh37	9	139564113	139564113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	212	443	2	ENST00000308874.7:c.253C>T	p.Arg85Cys	p.R85C	ENST00000308874		85	Cgc/Tgc						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67479840	67479840	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	41	341	1	ENST00000327367.4:c.1147G>T	p.Glu383Ter	p.E383*	ENST00000327367	NM_005902.3	383	Gag/Tag						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45371840	45371840	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	18	326	0	ENST00000262160.6:c.1151T>A	p.Ile384Asn	p.I384N	ENST00000262160	NM_005901.5	384	aTc/aAc						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70339247	70339261	+	inframe_deletion	In_Frame_Del	DEL	AAACAAGGTTTCAAT	AAACAAGGTTTCAAT	-			P-0010330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	71	345	0	ENST00000374080.3:c.126_140del	p.Lys42_Asn46del	p.K42_N46del	ENST00000374080		42	AAACAAGGTTTCAAT/-						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0012127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	217	306	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56189360	56189360	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0012127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	300	450	0	ENST00000399503.3:c.4392T>G	p.Ile1464Met	p.I1464M	ENST00000399503	NM_005921.1	1464	atT/atG						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11121099	11121099	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	346	619	0	ENST00000344626.4:c.2167del	p.Ala723ProfsTer51	p.A723Pfs*51	ENST00000344626	NM_003072.3	722	caG/ca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0012357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	57	434	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0012357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	21	83	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt						NEWRECORD																																																																									
LMO1	4004	MSKCC	GRCh37	11	8251991	8251991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	86	552	0	ENST00000335790.3:c.86G>T	p.Arg29Leu	p.R29L	ENST00000335790	NM_002315.2	29	cGc/cTc						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	30143171	30143171	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	32	305	1	ENST00000389048.3:c.355G>T	p.Glu119Ter	p.E119*	ENST00000389048	NM_004304.4	119	Gag/Tag						NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45003802	45003802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	72	342	0	ENST00000558401.1:c.58G>C	p.Ala20Pro	p.A20P	ENST00000558401	NM_004048.2	20	Gct/Cct						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7174720	7174720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	59	375	0	ENST00000302850.5:c.997G>C	p.Gly333Arg	p.G333R	ENST00000302850	NM_000208.2	333	Ggt/Cgt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	103	601	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0012556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	25	555	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151947027	151947027	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	29	597	0	ENST00000262189.6:c.1747C>A	p.His583Asn	p.H583N	ENST00000262189	NM_170606.2	583	Cac/Aac						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72992127	72992127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	62	1018	1	ENST00000268489.5:c.1918G>T	p.Val640Leu	p.V640L	ENST00000268489	NM_006885.3	640	Gtg/Ttg						NEWRECORD																																																																									
CEBPA	1050	MSKCC	GRCh37	19	33793161	33793161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	19	507	0	ENST00000498907.2:c.160G>A	p.Gly54Ser	p.G54S	ENST00000498907	NM_004364.3	54	Ggc/Agc						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39921606	39921606	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	71	467	0	ENST00000378444.4:c.4214C>G	p.Ser1405Trp	p.S1405W	ENST00000378444	NM_001123385.1	1405	tCg/tGg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	71	314	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	13	448	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37646813	37646813	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	119	432	0	ENST00000447079.4:c.1938del	p.Glu647LysfsTer8	p.E647Kfs*8	ENST00000447079	NM_015083.1	645	ccA/cc						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37650842	37650842	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	883	795	0	ENST00000447079.4:c.2314del	p.Ile772PhefsTer10	p.I772Ffs*10	ENST00000447079	NM_015083.1	772	Att/tt						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55958789	55958789	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	166	576	0	ENST00000263923.4:c.3064C>T	p.Arg1022Ter	p.R1022*	ENST00000263923	NM_002253.2	1022	Cga/Tga						NEWRECORD																																																																									
HLA-A	3105	MSKCC	GRCh37	6	29910594	29910594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	151	570	0	ENST00000376809.5:c.134G>A	p.Arg45His	p.R45H	ENST00000376809	NM_002116.7	45	cGc/cAc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151864220	151864229	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CTATTTATTA	CTATTTATTA	-			P-0015070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	24	182	0	ENST00000262189.6:c.9750+2_9750+11del		p.X3250_splice	ENST00000262189	NM_170606.2	3250							NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133760961	133760961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	274	752	1	ENST00000318560.5:c.3284G>A	p.Arg1095Gln	p.R1095Q	ENST00000318560	NM_005157.4	1095	cGg/cAg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717733	89717733	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	118	371	0	ENST00000371953.3:c.758T>A	p.Ile253Asn	p.I253N	ENST00000371953	NM_000314.4	253	aTc/aAc						NEWRECORD																																																																									
MCL1	4170	MSKCC	GRCh37	1	150551426	150551426	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	209	819	0	ENST00000369026.2:c.581A>C	p.Lys194Thr	p.K194T	ENST00000369026	NM_021960.4	194	aAg/aCg						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8436593	8436593	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0013036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	166	499	0	ENST00000356435.5:c.4085A>T	p.Glu1362Val	p.E1362V	ENST00000356435		1362	gAg/gTg						NEWRECORD																																																																									
MRE11A	4361	MSKCC	GRCh37	11	94194100	94194100	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0013036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	193	632	0	ENST00000323929.3:c.1326+2T>C		p.X442_splice	ENST00000323929	NM_005591.3	442							NEWRECORD																																																																									
CDKN1B	1027	MSKCC	GRCh37	12	12871044	12871044	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	110	293	0	ENST00000228872.4:c.275delC	p.Pro92ArgfsTer27	p.P92Rfs*27	ENST00000228872	NM_004064.3	91	Ccc/cc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1325	31	563	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	106	285	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42003303	42003303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	212	1045	0	ENST00000219905.7:c.2840C>T	p.Ser947Leu	p.S947L	ENST00000219905	NM_001164273.1	947	tCa/tTa						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110436093	110436094	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0013388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	149	582	0	ENST00000375856.3:c.2307_2308del	p.Ser770ProfsTer103	p.S770Pfs*103	ENST00000375856	NM_003749.2	769	gtGTcc/gtcc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	67	557	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11298650	11298650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	51	607	0	ENST00000361445.4:c.1811G>T	p.Arg604Leu	p.R604L	ENST00000361445	NM_004958.3	604	cGc/cTc						NEWRECORD																																																																									
MAX	4149	MSKCC	GRCh37	14	65544682	65544682	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	66	793	0	ENST00000358664.4:c.244C>T	p.Gln82Ter	p.Q82*	ENST00000358664	NM_002382.4	82	Cag/Tag						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29490328	29490328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	74	460	0	ENST00000358273.4:c.413C>A	p.Ala138Asp	p.A138D	ENST00000358273	NM_001042492.2	138	gCc/gAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0012743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	223	464	0	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33							NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8319952	8319952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	204	443	0	ENST00000356435.5:c.5549G>A	p.Arg1850Lys	p.R1850K	ENST00000356435		1850	aGa/aAa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8460538	8460538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	278	545	2	ENST00000356435.5:c.3748G>T	p.Val1250Leu	p.V1250L	ENST00000356435		1250	Gtg/Ttg						NEWRECORD																																																																									
TRAF2	7186	MSKCC	GRCh37	9	139820133	139820133	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0012743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	591	683	0	ENST00000247668.2:c.1288-2A>C		p.X430_splice	ENST00000247668	NM_021138.3	430							NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41203080	41203080	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	242	429	0	ENST00000357654.3:c.5332G>T	p.Asp1778Tyr	p.D1778Y	ENST00000357654	NM_007294.3	1778	Gat/Tat						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0013117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	555	645	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115745	8115745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1485	335	958	0	ENST00000346208.3:c.1091G>A	p.Arg364Lys	p.R364K	ENST00000346208		364	aGa/aAa						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180036016	180036016	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1349	401	1008	0	ENST00000261937.6:c.3845A>G	p.Glu1282Gly	p.E1282G	ENST00000261937	NM_182925.4	1282	gAg/gGg						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99472880	99472880	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1064	342	738	0	ENST00000268035.6:c.2876A>T	p.His959Leu	p.H959L	ENST00000268035	NM_000875.3	959	cAt/cTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	498	554	0	ENST00000269305.4:c.503A>T	p.His168Leu	p.H168L	ENST00000269305	NM_001126112.2	168	cAc/cTc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27099388	27099498	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGGGTATCAGCCCAGTATGAATACCTCTGACATGATGGGGCGCATGTCCTATGAGCCAAATAAGGATCCTTATGGCAGCATGAGGAAAGGTGACTGATCTGATTGCTAT	CCTGGGTATCAGCCCAGTATGAATACCTCTGACATGATGGGGCGCATGTCCTATGAGCCAAATAAGGATCCTTATGGCAGCATGAGGAAAGGTGACTGATCTGATTGCTAT	-			P-0013117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1074	121	723	0	ENST00000324856.7:c.3625_3715+20del		p.X1209_splice	ENST00000324856	NM_006015.4	1209							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	56	417	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0012139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	53	519	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43615610	43615610	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	71	478	0	ENST00000355710.3:c.2689C>T	p.Arg897Ter	p.R897*	ENST00000355710	NM_020975.4	897	Cga/Tga						NEWRECORD																																																																									
TSHR	7253	MSKCC	GRCh37	14	81610470	81610470	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	56	610	0	ENST00000298171.2:c.2068T>G	p.Phe690Val	p.F690V	ENST00000298171	NM_000369.2	690	Ttc/Gtc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0011093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	361	767	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42795609	42795609	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	334	910	1	ENST00000575354.2:c.2694del	p.Ala900ProfsTer24	p.A900Pfs*24	ENST00000575354	NM_015125.3	897	Ccc/cc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0012824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	331	549	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134920499	134920499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	61	653	0	ENST00000398015.3:c.2314G>A	p.Asp772Asn	p.D772N	ENST00000398015	NM_004441.4	772	Gac/Aac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578501	7578506	+	frameshift_variant	Frame_Shift_Del	DEL	CACAGG	CACAGG	T			P-0013886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	79	477	0	ENST00000269305.4:c.424_429delinsA	p.Pro142ThrfsTer5	p.P142Tfs*5	ENST00000269305	NM_001126112.2	142	CCTGTG/A						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27087533	27087533	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	125	639	0	ENST00000324856.7:c.2109del	p.Ala704ProfsTer38	p.A704Pfs*38	ENST00000324856	NM_006015.4	703	Ccc/cc						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226564978	226564978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	100	445	0	ENST00000366794.5:c.1772G>T	p.Arg591Leu	p.R591L	ENST00000366794	NM_001618.3	591	cGt/cTt						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	406221	406221	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	92	480	0	ENST00000399788.2:c.4220A>G	p.Lys1407Arg	p.K1407R	ENST00000399788	NM_001042603.1	1407	aAg/aGg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	136	415	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857103	9857103	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	124	527	0	ENST00000330684.3:c.4298C>A	p.Ala1433Glu	p.A1433E	ENST00000330684	NM_001134407.1	1433	gCa/gAa						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89528572	89528572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	60	335	0	ENST00000336596.2:c.2872G>A	p.Val958Met	p.V958M	ENST00000336596	NM_005233.5	958	Gtg/Atg						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106180872	106180872	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	74	494	0	ENST00000380013.4:c.3900T>G	p.Phe1300Leu	p.F1300L	ENST00000380013	NM_001127208.2	1300	ttT/ttG						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56168530	56168530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	74	299	0	ENST00000399503.3:c.1486A>G	p.Arg496Gly	p.R496G	ENST00000399503	NM_005921.1	496	Aga/Gga						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56177768	56177768	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	91	399	0	ENST00000399503.3:c.2741G>T	p.Gly914Val	p.G914V	ENST00000399503	NM_005921.1	914	gGa/gTa						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	198	431	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76889106	76889106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	329	772	0	ENST00000373344.5:c.4904T>C	p.Met1635Thr	p.M1635T	ENST00000373344	NM_000489.3	1635	aTg/aCg						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37880219	37880220	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC			P-0010927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	505	760	0	ENST00000269571.5:c.2263_2264delTTinsCC	p.Leu755Pro	p.L755P	ENST00000269571		755	TTg/CCg						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157527973	157527973	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	76	214	0	ENST00000346085.5:c.5698A>G	p.Ser1900Gly	p.S1900G	ENST00000346085	NM_020732.3	1900	Agc/Ggc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574032	7574032	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0010927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	197	592	0	ENST00000269305.4:c.995T>G	p.Ile332Ser	p.I332S	ENST00000269305	NM_001126112.2	332	aTc/aGc						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59858256	59858256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	252	570	0	ENST00000259008.2:c.1739C>T	p.Ser580Leu	p.S580L	ENST00000259008	NM_032043.2	580	tCa/tTa						NEWRECORD																																																																									
TOP1	7150	MSKCC	GRCh37	20	39729894	39729895	+	missense_variant	Missense_Mutation	DNP	AG	AG	TT			P-0010927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	114	597	1	ENST00000361337.2:c.1209_1210delinsTT	p.Glu403_Val404delinsAspPhe	p.E403_V404delinsDF	ENST00000361337	NM_003286.2	403	gaAGtc/gaTTtc						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67479795	67479795	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	781	672	1	ENST00000327367.4:c.1102C>T	p.Arg368Ter	p.R368*	ENST00000327367	NM_005902.3	368	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0013354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	601	531	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198269831	198269831	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	276	708	0	ENST00000335508.6:c.1508A>G	p.Lys503Arg	p.K503R	ENST00000335508	NM_012433.2	503	aAa/aGa						NEWRECORD																																																																									
PAK1	5058	MSKCC	GRCh37	11	77034406	77034406	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0013354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	121	411	2	ENST00000356341.3:c.1552-1G>C		p.X518_splice	ENST00000356341	NM_002576.4	518							NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37866090	37866090	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	61	700	0	ENST00000269571.5:c.599A>G	p.Lys200Arg	p.K200R	ENST00000269571		200	aAg/aGg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	238	455	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
FGF3	2248	MSKCC	GRCh37	11	69633658	69633658	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	33	49	0	ENST00000334134.2:c.44G>T	p.Gly15Val	p.G15V	ENST00000334134	NM_005247.2	15	gGc/gTc						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28578209	28578209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	104	440	2	ENST00000241453.7:c.2962G>A	p.Ala988Thr	p.A988T	ENST00000241453	NM_004119.2	988	Gct/Act						NEWRECORD																																																																									
NKX2-1	7080	MSKCC	GRCh37	14	36988250	36988250	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1320	991	695	0	ENST00000354822.5:c.403A>T	p.Arg135Trp	p.R135W	ENST00000354822	NM_001079668.2	135	Agg/Tgg						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89391075	89391075	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1321	108	661	0	ENST00000336596.2:c.1141C>G	p.Arg381Gly	p.R381G	ENST00000336596	NM_005233.5	381	Cgc/Ggc						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157099815	157099815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1454	203	650	0	ENST00000346085.5:c.752G>A	p.Cys251Tyr	p.C251Y	ENST00000346085	NM_020732.3	251	tGc/tAc						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47038779	47038779	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1345	276	701	0	ENST00000329236.7:c.556delC	p.Arg186GlyfsTer3	p.R186Gfs*3	ENST00000329236	NM_001204466.1	185	ggC/gg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	202	483	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587782082		P-0014319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	347	568	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg						NEWRECORD																																																																									
UPF1	5976	MSKCC	GRCh37	19	18972835	18972835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	269	437	0	ENST00000262803.5:c.2474G>A	p.Ser825Asn	p.S825N	ENST00000262803	NM_002911.3	825	aGt/aAt						NEWRECORD																																																																									
TP53BP1	7158	MSKCC	GRCh37	15	43700254	43700254	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	78	837	0	ENST00000382044.4:c.5633A>C	p.Lys1878Thr	p.K1878T	ENST00000382044	NM_001141980.1	1878	aAg/aCg						NEWRECORD																																																																									
PIK3R2	5296	MSKCC	GRCh37	19	18279962	18279962	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	156	587	0	ENST00000222254.8:c.2045C>G	p.Pro682Arg	p.P682R	ENST00000222254	NM_005027.3	682	cCc/cGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0011078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1458	45	713	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0012510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	169	325	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0012510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	70	409	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0012510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	45	251	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398297	25398297	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	144	304	0	ENST00000256078.4:c.22G>C	p.Val8Leu	p.V8L	ENST00000256078	NM_033360.2	8	Gta/Cta						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	143	331	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0010535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	29	217	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	69	265	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	11	39	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc						NEWRECORD																																																																									
FUBP1	8880	MSKCC	GRCh37	1	78429758	78429758	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	58	333	0	ENST00000370768.2:c.1030C>T	p.Arg344Ter	p.R344*	ENST00000370768	NM_003902.3	344	Cga/Tga						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52637546	52637546	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1182	94	665	0	ENST00000394830.3:c.2770G>T	p.Glu924Ter	p.E924*	ENST00000394830	NM_018313.4	924	Gaa/Taa						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2976744	2976744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	116	566	2	ENST00000396946.4:c.1268G>A	p.Arg423Gln	p.R423Q	ENST00000396946	NM_032415.4	423	cGg/cAg						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15285131	15285131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	29	258	0	ENST00000263388.2:c.4484G>T	p.Trp1495Leu	p.W1495L	ENST00000263388	NM_000435.2	1495	tGg/tTg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175117	112175394	+	frameshift_variant	Frame_Shift_Del	DEL	TCATTATCATCTTTGTCATCAGCTGAAGATGAAATAGGATGTAATCAGACGACACAGGAAGCAGATTCTGCTAATACCCTGCAAATAGCAGAAATAAAAGAAAAGATTGGAACTAGGTCAGCTGAAGATCCTGTGAGCGAAGTTCCAGCAGTGTCACAGCACCCTAGAACCAAATCCAGCAGACTGCAGGGTTCTAGTTTATCTTCAGAATCAGCCAGGCACAAAGCTGTTGAATTTTCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGAC	TCATTATCATCTTTGTCATCAGCTGAAGATGAAATAGGATGTAATCAGACGACACAGGAAGCAGATTCTGCTAATACCCTGCAAATAGCAGAAATAAAAGAAAAGATTGGAACTAGGTCAGCTGAAGATCCTGTGAGCGAAGTTCCAGCAGTGTCACAGCACCCTAGAACCAAATCCAGCAGACTGCAGGGTTCTAGTTTATCTTCAGAATCAGCCAGGCACAAAGCTGTTGAATTTTCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGAC	-			P-0010535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	75	233	0	ENST00000257430.4:c.3826_4103del	p.Ser1276ThrfsTer6	p.S1276Tfs*6	ENST00000257430	NM_000038.5	1276	TCATTATCATCTTTGTCATCAGCTGAAGATGAAATAGGATGTAATCAGACGACACAGGAAGCAGATTCTGCTAATACCCTGCAAATAGCAGAAATAAAAGAAAAGATTGGAACTAGGTCAGCTGAAGATCCTGTGAGCGAAGTTCCAGCAGTGTCACAGCACCCTAGAACCAAATCCAGCAGACTGCAGGGTTCTAGTTTATCTTCAGAATCAGCCAGGCACAAAGCTGTTGAATTTTCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACa/a						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249005	55249007	+	missense_variant	Missense_Mutation	ONP	GCG	GCG	TCC			P-0012404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	265	508	0	ENST00000275493.2:c.2303_2305delinsTCC	p.Ser768_Val769delinsIleLeu	p.S768_V769delinsIL	ENST00000275493	NM_005228.3	768	aGCGtg/aTCCtg						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0012588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	352	576	0				ENST00000310581	NM_198253.2								NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0012588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	257	611	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5080375	5080375	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	85	324	0	ENST00000381652.3:c.2278C>G	p.Gln760Glu	p.Q760E	ENST00000381652	NM_004972.3	760	Caa/Gaa						NEWRECORD																																																																									
CDK6	1021	MSKCC	GRCh37	7	92404021	92404021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	137	584	1	ENST00000265734.4:c.358G>A	p.Glu120Lys	p.E120K	ENST00000265734	NM_001259.6	120	Gaa/Aaa						NEWRECORD																																																																									
PAK1	5058	MSKCC	GRCh37	11	77090379	77090379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	528	828	0	ENST00000356341.3:c.346G>A	p.Glu116Lys	p.E116K	ENST00000356341	NM_002576.4	116	Gag/Aag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0011541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	122	478	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578371	7578371	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0011541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	38	336	0	ENST00000269305.4:c.559G>C	p.Gly187Arg	p.G187R	ENST00000269305	NM_001126112.2	187	Ggt/Cgt						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2134978	2134978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	22	573	0	ENST00000219476.3:c.4520C>A	p.Ser1507Tyr	p.S1507Y	ENST00000219476	NM_000548.3	1507	tCc/tAc						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42790947	42790947	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	33	591	0	ENST00000575354.2:c.92C>G	p.Ser31Cys	p.S31C	ENST00000575354	NM_015125.3	31	tCt/tGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0010716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	50	462	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	32	368	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30729962	30729962	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs104893819		P-0010716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	30	315	2	ENST00000359013.4:c.1558C>T	p.Arg520Ter	p.R520*	ENST00000359013	NM_001024847.2	520	Cga/Tga						NEWRECORD																																																																									
BIRC3	330	MSKCC	GRCh37	11	102195761	102195761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1132	66	664	0	ENST00000263464.3:c.522del	p.Thr175LeufsTer7	p.T175Lfs*7	ENST00000263464	NM_001165.4	174	cTt/ct						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106509208	106509208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	333	578	1	ENST00000359195.3:c.1202C>T	p.Pro401Leu	p.P401L	ENST00000359195	NM_002649.2	401	cCc/cTc						NEWRECORD																																																																									
CCND1	595	MSKCC	GRCh37	11	69457936	69457936	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			4317	749	596	0	ENST00000227507.2:c.336G>C	p.Lys112Asn	p.K112N	ENST00000227507	NM_053056.2	112	aaG/aaC						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59761286	59761286	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	370	660	1	ENST00000259008.2:c.3121A>T	p.Met1041Leu	p.M1041L	ENST00000259008	NM_032043.2	1041	Atg/Ttg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0010903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1141	376	771	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	179	457	0	ENST00000304494.5:c.322G>C	p.Asp108His	p.D108H	ENST00000304494	NM_000077.4	108	Gat/Cat						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0010903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1184	219	715	1	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag						NEWRECORD																																																																									
NEGR1	257194	MSKCC	GRCh37	1	71873237	71873237	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1217	176	882	0	ENST00000357731.5:c.957G>T	p.Gln319His	p.Q319H	ENST00000357731	NM_173808.2	319	caG/caT						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151876936	151876936	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	231	593	0	ENST00000262189.6:c.7425G>C	p.Met2475Ile	p.M2475I	ENST00000262189	NM_170606.2	2475	atG/atC						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151877975	151877975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	236	501	0	ENST00000262189.6:c.6970G>A	p.Asp2324Asn	p.D2324N	ENST00000262189	NM_170606.2	2324	Gat/Aat						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151878254	151878254	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	293	655	0	ENST00000262189.6:c.6691G>T	p.Glu2231Ter	p.E2231*	ENST00000262189	NM_170606.2	2231	Gag/Tag						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49426172	49426172	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	89	389	0	ENST00000301067.7:c.12316A>T	p.Ser4106Cys	p.S4106C	ENST00000301067	NM_003482.3	4106	Agc/Tgc						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108199756	108199757	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0010903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	231	388	0	ENST00000278616.4:c.7098_7099del	p.Glu2366AspfsTer6	p.E2366Dfs*6	ENST00000278616	NM_000051.3	2366	gaAGtt/gatt						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0013935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	64	417	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221989	1221989	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	52	766	0	ENST00000326873.7:c.904C>T	p.Gln302Ter	p.Q302*	ENST00000326873	NM_000455.4	302	Cag/Tag						NEWRECORD																																																																									
REL	5966	MSKCC	GRCh37	2	61149503	61149503	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	58	694	0	ENST00000295025.8:c.1693T>G	p.Ser565Ala	p.S565A	ENST00000295025	NM_002908.2	565	Tct/Gct						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	308	696	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243736308	243736308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	81	537	0	ENST00000263826.5:c.739C>T	p.Arg247Cys	p.R247C	ENST00000263826	NM_005465.4	247	Cgc/Tgc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0010258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	22	425	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	398	344	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0011435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	327	464	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47039347	47039347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	176	269	0	ENST00000329236.7:c.739G>A	p.Ala247Thr	p.A247T	ENST00000329236	NM_001204466.1	247	Gcg/Acg						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8460427	8460427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	177	279	0	ENST00000356435.5:c.3859A>G	p.Ile1287Val	p.I1287V	ENST00000356435		1287	Att/Gtt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0013435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	149	563	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578443	7578444	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0013435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	156	509	0	ENST00000269305.4:c.486_487del	p.Tyr163GlnfsTer17	p.Y163Qfs*17	ENST00000269305	NM_001126112.2	162	atCTac/atac						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70354688	70354688	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1389	118	806	0	ENST00000374080.3:c.4853A>C	p.Lys1618Thr	p.K1618T	ENST00000374080		1618	aAg/aCg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	88	383	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602341	10602341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1201	184	554	1	ENST00000171111.5:c.1237C>T	p.Arg413Cys	p.R413C	ENST00000171111	NM_203500.1	413	Cgt/Tgt						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63851016	63851016	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	113	455	0	ENST00000279873.7:c.1797del	p.Thr600ProfsTer29	p.T600Pfs*29	ENST00000279873	NM_032199.2	598	ttC/tt						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9934797	9934797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	80	405	2	ENST00000330684.3:c.1493G>A	p.Gly498Asp	p.G498D	ENST00000330684	NM_001134407.1	498	gGt/gAt						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2210406	2210406	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	108	464	0	ENST00000398665.3:c.1013A>T	p.Gln338Leu	p.Q338L	ENST00000398665	NM_032482.2	338	cAg/cTg						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11101842	11101842	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	156	483	0	ENST00000344626.4:c.1262T>A	p.Val421Glu	p.V421E	ENST00000344626	NM_003072.3	421	gTg/gAg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0011389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	72	472	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55221822	55221822	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149840192		P-0011389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	121	698	3	ENST00000275493.2:c.866C>T	p.Ala289Val	p.A289V	ENST00000275493	NM_005228.3	289	gCc/gTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577084	7577084	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	189	532	0	ENST00000269305.4:c.854A>T	p.Glu285Val	p.E285V	ENST00000269305	NM_001126112.2	285	gAg/gTg						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212248666	212248666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	91	449	0	ENST00000342788.4:c.3601G>A	p.Glu1201Lys	p.E1201K	ENST00000342788	NM_005235.2	1201	Gag/Aag						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70450876	70450876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	42	242	0	ENST00000373644.4:c.5716G>A	p.Glu1906Lys	p.E1906K	ENST00000373644	NM_030625.2	1906	Gaa/Aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	241	765	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89877441	89877441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	233	632	0	ENST00000389301.3:c.322C>T	p.Pro108Ser	p.P108S	ENST00000389301	NM_000135.2	108	Ccc/Tcc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27100914	27100914	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	69	584	0	ENST00000324856.7:c.4196A>G	p.Gln1399Arg	p.Q1399R	ENST00000324856	NM_006015.4	1399	cAg/cGg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49434927	49434953	+	inframe_deletion	In_Frame_Del	DEL	GGCTGCGCAGGGGCCCCCGTAGGACTA	GGCTGCGCAGGGGCCCCCGTAGGACTA	-			P-0014580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	137	704	0	ENST00000301067.7:c.6600_6626del	p.Ser2201_Pro2209del	p.S2201_P2209del	ENST00000301067	NM_003482.3	2200	ccTAGTCCTACGGGGGCCCCTGCGCAGCCc/ccc						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88483906	88483906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	211	672	1	ENST00000360948.2:c.1664C>T	p.Ala555Val	p.A555V	ENST00000360948	NM_001012338.2	555	gCc/gTc						NEWRECORD																																																																									
XPO1	7514	MSKCC	GRCh37	2	61717733	61717780	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTAAATCCCATGAAAACTTTTAAGAAAAGGTAGAAATACTTACTTTG	GTTAAATCCCATGAAAACTTTTAAGAAAAGGTAGAAATACTTACTTTG	-			P-0014580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	19	179	0	ENST00000401558.2:c.2019_2022+44del		p.X673_splice	ENST00000401558	NM_003400.3	673							NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36206555	36206856	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGCTCCCAGGTGGTGCTGTTGGTTCGAGGCCTTTCTCTGAGCATCAAGGGGAAACCCCAGTTGGTCTGGGAAGGTGTGTGCACATGGGGGCCAGTTGTGGGTGGTGGCCCAGGTGCAGGAGAGGCGGGCAGTGGGCTCCATCTGGTACTTACCCTGCATCTGACTCTGAGGCTGAGGGTTAAAGGCAGTGGAGTGGTTCAGGGAGGCACGAGGGTTGGGCGTGGGGGCTGGGTGGTGTGGGCTGACCCTCATGGCTGTGCGCCGCAGCTGCTCCAGTTCACTGAGCCGCTCGGAAAAGGACA	AGCTCCCAGGTGGTGCTGTTGGTTCGAGGCCTTTCTCTGAGCATCAAGGGGAAACCCCAGTTGGTCTGGGAAGGTGTGTGCACATGGGGGCCAGTTGTGGGTGGTGGCCCAGGTGCAGGAGAGGCGGGCAGTGGGCTCCATCTGGTACTTACCCTGCATCTGACTCTGAGGCTGAGGGTTAAAGGCAGTGGAGTGGTTCAGGGAGGCACGAGGGTTGGGCGTGGGGGCTGGGTGGTGTGGGCTGACCCTCATGGCTGTGCGCCGCAGCTGCTCCAGTTCACTGAGCCGCTCGGAAAAGGACA	-			P-0014580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	95	578	0	ENST00000300305.3:c.656_805+152del		p.X219_splice	ENST00000300305		219							NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89480491	89480491	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	63	218	0	ENST00000336596.2:c.2328A>T	p.Glu776Asp	p.E776D	ENST00000336596	NM_005233.5	776	gaA/gaT						NEWRECORD																																																																									
EGFL7	51162	MSKCC	GRCh37	9	139564109	139564109	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	173	753	0	ENST00000308874.7:c.249G>C	p.Arg83Ser	p.R83S	ENST00000308874		83	agG/agC						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70340883	70340883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	160	566	1	ENST00000374080.3:c.616C>T	p.Arg206Trp	p.R206W	ENST00000374080		206	Cgg/Tgg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	37	576	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112176654	112176654	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201472075		P-0004297-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			114	10	489	0	ENST00000257430.4:c.5363G>A	p.Arg1788His	p.R1788H	ENST00000257430	NM_000038.5	1788	cGt/cAt						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16265278	16265278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	288	506	1	ENST00000375759.3:c.10770C>A	p.Ser3590Arg	p.S3590R	ENST00000375759	NM_015001.2	3590	agC/agA						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	191	639	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	230	815	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag						NEWRECORD																																																																									
SMARCB1	6598	MSKCC	GRCh37	22	24143268	24143268	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	121	816	0	ENST00000263121.7:c.500G>T	p.Cys167Phe	p.C167F	ENST00000263121	NM_003073.3	167	tGc/tTc						NEWRECORD																																																																									
TNFRSF14	8764	MSKCC	GRCh37	1	2493203	2493203	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	120	792	0	ENST00000355716.4:c.643G>T	p.Val215Phe	p.V215F	ENST00000355716	NM_003820.2	215	Gtt/Ttt						NEWRECORD																																																																									
NUF2	83540	MSKCC	GRCh37	1	163295923	163295923	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	182	776	2	ENST00000271452.3:c.82G>T	p.Gly28Cys	p.G28C	ENST00000271452	NM_145697.2	28	Ggt/Tgt						NEWRECORD																																																																									
FLCN	201163	MSKCC	GRCh37	17	17119708	17119708	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	152	562	2	ENST00000285071.4:c.1286A>T	p.His429Leu	p.H429L	ENST00000285071	NM_144997.5	429	cAc/cTc						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41244817	41244817	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	221	788	0	ENST00000357654.3:c.2731G>T	p.Gly911Ter	p.G911*	ENST00000357654	NM_007294.3	911	Gga/Tga						NEWRECORD																																																																									
HOXB13	10481	MSKCC	GRCh37	17	46804349	46804349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	150	553	0	ENST00000290295.7:c.658C>A	p.Arg220Ser	p.R220S	ENST00000290295	NM_006361.5	220	Cgc/Agc						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25990587	25990587	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	98	643	0	ENST00000435504.4:c.640G>T	p.Glu214Ter	p.E214*	ENST00000435504		214	Gaa/Taa						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	26101089	26101089	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	207	516	0	ENST00000435504.4:c.3G>A	p.Met1?	p.M1?	ENST00000435504		1	atG/atA						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55129963	55129963	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	202	725	0	ENST00000257290.5:c.497G>C	p.Gly166Ala	p.G166A	ENST00000257290	NM_006206.4	166	gGg/gCg						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41729265	41729265	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	128	473	0	ENST00000242208.4:c.1264G>T	p.Glu422Ter	p.E422*	ENST00000242208	NM_002192.2	422	Gag/Tag						NEWRECORD																																																																									
PREX2	80243	MSKCC	GRCh37	8	68989633	68989633	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	257	543	0	ENST00000288368.4:c.1571G>C	p.Gly524Ala	p.G524A	ENST00000288368	NM_024870.2	524	gGa/gCa						NEWRECORD																																																																									
TEK	7010	MSKCC	GRCh37	9	27183552	27183552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	96	650	0	ENST00000380036.4:c.1126C>A	p.Pro376Thr	p.P376T	ENST00000380036	NM_000459.3	376	Ccg/Acg						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87635202	87635202	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	95	612	4	ENST00000277120.3:c.2254G>T	p.Val752Phe	p.V752F	ENST00000277120		752	Gtc/Ttc						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101894934	101894934	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	132	413	0	ENST00000374994.4:c.487G>T	p.Asp163Tyr	p.D163Y	ENST00000374994	NM_004612.2	163	Gac/Tac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	425	403	0	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0010053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	2992	422	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16259213	16259213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	79	278	0	ENST00000375759.3:c.6478C>T	p.Pro2160Ser	p.P2160S	ENST00000375759	NM_015001.2	2160	Cca/Tca						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187524401	187524401	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0011018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	62	343	0	ENST00000441802.2:c.11279C>G	p.Ser3760Ter	p.S3760*	ENST00000441802	NM_005245.3	3760	tCa/tGa						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68845724	68845724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	107	440	1	ENST00000261769.5:c.970G>A	p.Gly324Arg	p.G324R	ENST00000261769	NM_004360.3	324	Gga/Aga						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11187681	11187681	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0011395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	82	850	2	ENST00000361445.4:c.6216G>C	p.Gln2072His	p.Q2072H	ENST00000361445	NM_004958.3	2072	caG/caC						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89462414	89462414	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0011395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	253	479	2	ENST00000336596.2:c.1886C>A	p.Ala629Glu	p.A629E	ENST00000336596	NM_005233.5	629	gCa/gAa						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55573419	55573419	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	133	569	0	ENST00000288135.5:c.1081G>T	p.Asp361Tyr	p.D361Y	ENST00000288135	NM_000222.2	361	Gat/Tat						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67575554	67575554	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	58	558	0	ENST00000274335.5:c.627A>T	p.Leu209Phe	p.L209F	ENST00000274335		209	ttA/ttT						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88472567	88472567	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	301	776	0	ENST00000360948.2:c.1988T>A	p.Ile663Asn	p.I663N	ENST00000360948	NM_001012338.2	663	aTc/aAc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40979319	40979319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	187	683	0	ENST00000373198.4:c.1814C>A	p.Thr605Lys	p.T605K	ENST00000373198	NM_133170.3	605	aCg/aAg						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116411882	116411902	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TTTCTTTCTCTCTGTTTTAAG	TTTCTTTCTCTCTGTTTTAAG	-			P-0011395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	357	322	0	ENST00000397752.3:c.2888-21_2888-1del		p.X963_splice	ENST00000397752	NM_000245.2	963							NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48923137	48923137	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	307	534	1	ENST00000267163.4:c.585G>A	p.Trp195Ter	p.W195*	ENST00000267163	NM_000321.2	195	tgG/tgA						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931588		P-0014076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	534	821	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0014076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	1267	1013	2	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc						NEWRECORD																																																																									
RFWD2	64326	MSKCC	GRCh37	1	175957495	175957495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1350	79	872	0	ENST00000367669.3:c.1901G>A	p.Arg634His	p.R634H	ENST00000367669	NM_022457.5	634	cGt/cAt						NEWRECORD																																																																									
FGF3	2248	MSKCC	GRCh37	11	69633665	69633665	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	19	86	0	ENST00000334134.2:c.37G>C	p.Glu13Gln	p.E13Q	ENST00000334134	NM_005247.2	13	Gag/Cag						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66937379	66937379	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	104	576	0	ENST00000374690.3:c.2233C>A	p.Leu745Ile	p.L745I	ENST00000374690	NM_000044.3	745	Ctc/Atc						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	48	403	0	ENST00000361445.4:c.5930C>G	p.Thr1977Arg	p.T1977R	ENST00000361445	NM_004958.3	1977	aCa/aGa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	220	422	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103515378	103515378	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	46	231	0	ENST00000355739.4:c.1879G>T	p.Ala627Ser	p.A627S	ENST00000355739	NM_000123.3	627	Gca/Tca						NEWRECORD																																																																									
MAX	4149	MSKCC	GRCh37	14	65560499	65560499	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	97	332	0	ENST00000358664.4:c.98G>C	p.Arg33Pro	p.R33P	ENST00000358664	NM_002382.4	33	cGa/cCa						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95562693	95562693	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	56	289	0	ENST00000343455.3:c.4564G>C	p.Asp1522His	p.D1522H	ENST00000343455	NM_177438.2	1522	Gac/Cac						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72992277	72992277	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	45	588	0	ENST00000268489.5:c.1768T>G	p.Phe590Val	p.F590V	ENST00000268489	NM_006885.3	590	Ttc/Gtc						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42788919	42788919	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	69	450	1	ENST00000575354.2:c.63G>T	p.Met21Ile	p.M21I	ENST00000575354	NM_015125.3	21	atG/atT						NEWRECORD																																																																									
MITF	4286	MSKCC	GRCh37	3	69928417	69928417	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	30	353	0	ENST00000352241.4:c.237G>T	p.Lys79Asn	p.K79N	ENST00000352241	NM_198159.2	79	aaG/aaT						NEWRECORD																																																																									
PPP4R2	151987	MSKCC	GRCh37	3	73114233	73114233	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201957466		P-0014450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	36	313	0	ENST00000356692.5:c.869G>A	p.Arg290His	p.R290H	ENST00000356692		290	cGt/cAt						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55371684	55371684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	61	498	0	ENST00000297316.4:c.374G>A	p.Arg125His	p.R125H	ENST00000297316	NM_022454.3	125	cGc/cAc						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47041726	47041726	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0014450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	88	438	2	ENST00000329236.7:c.1716+1G>T		p.X572_splice	ENST00000329236	NM_001204466.1	572							NEWRECORD																																																																									
IRS1	3667	MSKCC	GRCh37	2	227662364	227662364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	209	416	0	ENST00000305123.5:c.1091G>A	p.Arg364Gln	p.R364Q	ENST00000305123	NM_005544.2	364	cGg/cAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0012653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	561	495	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0012653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	293	356	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0012653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	518	469	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41076870	41076870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	441	571	0	ENST00000373198.4:c.1550C>T	p.Thr517Met	p.T517M	ENST00000373198	NM_133170.3	517	aCg/aTg						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135781515	135781516	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	G			P-0010692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	1070	888	0	ENST00000298552.3:c.1449_1450delinsC	p.Arg484GlufsTer48	p.R484Efs*48	ENST00000298552	NM_001162426.1	483	tcTAga/tcCga						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	76	248	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	215	736	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	64	211	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67650748	67650748	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	244	734	0	ENST00000264010.4:c.1053C>G	p.Phe351Leu	p.F351L	ENST00000264010	NM_006565.3	351	ttC/ttG						NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	284	862	1	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	95	312	0	ENST00000250448.2:c.798C>G	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttG						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21549134	21549134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	209	873	1	ENST00000382592.4:c.3142G>A	p.Asp1048Asn	p.D1048N	ENST00000382592	NM_014572.2	1048	Gac/Aac						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68772269	68772290	+	frameshift_variant	Frame_Shift_Del	DEL	ACGGTGCCCCGGCGCCACCTGG	ACGGTGCCCCGGCGCCACCTGG	-			P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	176	704	0	ENST00000261769.5:c.119_140del	p.Thr40ArgfsTer9	p.T40Rfs*9	ENST00000261769	NM_004360.3	40	ACGGTGCCCCGGCGCCACCTGGag/ag						NEWRECORD																																																																									
GPS2	2874	MSKCC	GRCh37	17	7216899	7216899	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	251	987	1	ENST00000380728.2:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000380728		208	Cag/Tag						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29528086	29528086	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	88	343	0	ENST00000358273.4:c.1094C>G	p.Ser365Ter	p.S365*	ENST00000358273	NM_001042492.2	365	tCa/tGa						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524466	44524466	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	170	452	0	ENST00000291552.4:c.91G>C	p.Asp31His	p.D31H	ENST00000291552	NM_006758.2	31	Gac/Cac						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153259011	153259011	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	191	639	0	ENST00000281708.4:c.804G>C	p.Met268Ile	p.M268I	ENST00000281708	NM_033632.3	268	atG/atC						NEWRECORD																																																																									
HIST1H3C	8352	MSKCC	GRCh37	6	26046026	26046026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	278	1230	0	ENST00000540144.1:c.388C>T	p.Arg130Cys	p.R130C	ENST00000540144	NM_003531.2	130	Cgc/Tgc						NEWRECORD																																																																									
FGFR1	2260	MSKCC	GRCh37	8	38285903	38285903	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3639	235	864	1	ENST00000425967.3:c.508G>T	p.Glu170Ter	p.E170*	ENST00000425967	NM_001174067.1	170	Gag/Tag						NEWRECORD																																																																									
NBN	4683	MSKCC	GRCh37	8	90993741	90993742	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	84	290	0	ENST00000265433.3:c.181_182del	p.Asp61Ter	p.D61*	ENST00000265433	NM_002485.4	61	GAt/t						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5081808	5081808	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	204	534	0	ENST00000381652.3:c.2518G>C	p.Asp840His	p.D840H	ENST00000381652	NM_004972.3	840	Gat/Cat						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0011184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	16	391	2	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0011184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1099	2601	583	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg						NEWRECORD																																																																									
HIST1H3H	8357	MSKCC	GRCh37	6	27778095	27778095	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1979	120	1188	0	ENST00000369163.2:c.244G>C	p.Asp82His	p.D82H	ENST00000369163	NM_003536.2	82	Gac/Cac						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41729811	41729811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1208	75	635	0	ENST00000242208.4:c.718G>A	p.Val240Ile	p.V240I	ENST00000242208	NM_002192.2	240	Gtt/Att						NEWRECORD																																																																									
CD276	80381	MSKCC	GRCh37	15	73991994	73991994	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139808700		P-0011184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1104	84	582	0	ENST00000318443.5:c.14G>A	p.Arg5Gln	p.R5Q	ENST00000318443	NM_001024736.1	5	cGg/cAg						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99451967	99451967	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1039	64	516	0	ENST00000268035.6:c.1301G>A	p.Trp434Ter	p.W434*	ENST00000268035	NM_000875.3	434	tGg/tAg						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16022778	16022790	+	protein_altering_variant	In_Frame_Del	DEL	GTCTCCACAGGCT	GTCTCCACAGGCT	CGGA			P-0011184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	130	430	0	ENST00000268712.3:c.1862_1874delinsTCCG	p.Glu621_Thr625delinsValArg	p.E621_T625delinsVR	ENST00000268712	NM_006311.3	621	gAGCCTGTGGAGACc/gTCCGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0011265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	28	509	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0011265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	42	441	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38950410	38950410	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	26	478	0	ENST00000357387.3:c.3540A>C	p.Glu1180Asp	p.E1180D	ENST00000357387	NM_152756.3	1180	gaA/gaC						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971115	21971116	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0011265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	22	191	0	ENST00000304494.5:c.242_243del	p.Pro81ArgfsTer38	p.P81Rfs*38	ENST00000304494	NM_000077.4	81	cCC/c						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604763	48604763	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	36	579	0	ENST00000342988.3:c.1586del	p.Leu529TyrfsTer8	p.L529Yfs*8	ENST00000342988	NM_005359.5	529	Tta/ta						NEWRECORD																																																																									
PIK3CD	5293	MSKCC	GRCh37	1	9775987	9775987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	312	313	1	ENST00000377346.4:c.451G>T	p.Ala151Ser	p.A151S	ENST00000377346	NM_005026.3	151	Gcc/Tcc						NEWRECORD																																																																									
FH	2271	MSKCC	GRCh37	1	241665742	241665742	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0012055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1290	332	459	0	ENST00000366560.3:c.1236+1G>T		p.X412_splice	ENST00000366560	NM_000143.3	412							NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66535399	66535399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	446	206	0	ENST00000273854.3:c.62C>A	p.Thr21Asn	p.T21N	ENST00000273854	NM_004439.5	21	aCc/aAc						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157528273	157528273	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	415	424	0	ENST00000346085.5:c.5998G>C	p.Asp2000His	p.D2000H	ENST00000346085	NM_020732.3	2000	Gat/Cat						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108235809	108235809	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	533	342	0	ENST00000278616.4:c.8851G>A	p.Val2951Ile	p.V2951I	ENST00000278616	NM_000051.3	2951	Gtc/Atc						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42794422	42794422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	1431	665	1	ENST00000575354.2:c.1502C>A	p.Ser501Tyr	p.S501Y	ENST00000575354	NM_015125.3	501	tCc/tAc						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42794967	42794967	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	617	310	0	ENST00000575354.2:c.2047C>G	p.Pro683Ala	p.P683A	ENST00000575354	NM_015125.3	683	Cct/Gct						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76972664	76972664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	850	594	1	ENST00000373344.5:c.77C>T	p.Ser26Leu	p.S26L	ENST00000373344	NM_000489.3	26	tCa/tTa						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47034475	47034476	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0012055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	502	512	2	ENST00000329236.7:c.329_330delinsAA	p.Trp110Ter	p.W110*	ENST00000329236	NM_001204466.1	110	tGG/tAA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	123	550	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc						NEWRECORD																																																																									
FOXP1	27086	MSKCC	GRCh37	3	71021728	71021728	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1104	116	653	0	ENST00000318789.4:c.1630C>T	p.Arg544Ter	p.R544*	ENST00000318789	NM_032682.5	544	Cga/Tga						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12032466	12032466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	105	355	0	ENST00000353533.5:c.902C>A	p.Ala301Asp	p.A301D	ENST00000353533	NM_003010.3	301	gCc/gAc						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162746102	162746102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	77	483	0	ENST00000367921.3:c.2225G>A	p.Arg742Gln	p.R742Q	ENST00000367921	NM_006182.2	742	cGg/cAg						NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	162622165	162622165	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	49	441	0	ENST00000366898.1:c.532C>T	p.Gln178Ter	p.Q178*	ENST00000366898	NM_004562.2	178	Cag/Tag						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508595	106508595	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	42	345	0	ENST00000359195.3:c.589G>T	p.Ala197Ser	p.A197S	ENST00000359195	NM_002649.2	197	Gcc/Tcc						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116399545	116399545	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1104	102	626	0	ENST00000397752.3:c.2364+1G>C		p.X788_splice	ENST00000397752	NM_000245.2	788							NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43598017	43598017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	90	515	1	ENST00000355710.3:c.565C>T	p.Arg189Cys	p.R189C	ENST00000355710	NM_020975.4	189	Cgc/Tgc						NEWRECORD																																																																									
CBL	867	MSKCC	GRCh37	11	119170373	119170373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	49	567	0	ENST00000264033.4:c.2603G>A	p.Gly868Glu	p.G868E	ENST00000264033	NM_005188.3	868	gGg/gAg						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67457330	67457330	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	130	652	2	ENST00000327367.4:c.304G>T	p.Glu102Ter	p.E102*	ENST00000327367	NM_005902.3	102	Gag/Tag						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	10032174	10032174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	49	587	0	ENST00000330684.3:c.649G>A	p.Val217Ile	p.V217I	ENST00000330684	NM_001134407.1	217	Gtc/Atc						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76937287	76937287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	74	266	0	ENST00000373344.5:c.3461C>T	p.Ser1154Leu	p.S1154L	ENST00000373344	NM_000489.3	1154	tCa/tTa						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27099945	27099954	+	frameshift_variant	Frame_Shift_Del	DEL	CACGACAGCA	CACGACAGCA	-			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	60	615	0	ENST00000324856.7:c.3825_3834del	p.Arg1276IlefsTer10	p.R1276Ifs*10	ENST00000324856	NM_006015.4	1275	cCACGACAGCAc/cc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175467	112175467	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	155	469	0	ENST00000257430.4:c.4176del	p.Asp1394IlefsTer21	p.D1394Ifs*21	ENST00000257430	NM_000038.5	1392	tcA/tc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	23	503	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28929495		P-0014885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	52	629	0	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55241678	55241678	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs397517085		P-0014885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	59	734	0	ENST00000275493.2:c.2126A>C	p.Glu709Ala	p.E709A	ENST00000275493	NM_005228.3	709	gAa/gCa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	232	463	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0012366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	99	515	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45374945	45374945	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	268	478	0	ENST00000262160.6:c.898G>C	p.Asp300His	p.D300H	ENST00000262160	NM_005901.5	300	Gat/Cat						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175756	112175762	+	frameshift_variant	Frame_Shift_Del	DEL	TTACATT	TTACATT	-			P-0012366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	75	341	0	ENST00000257430.4:c.4467_4473del	p.His1490ProfsTer15	p.H1490Pfs*15	ENST00000257430	NM_000038.5	1489	TTACATTtt/tt						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70120123	70120132	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCCACAG	GCAGCCACAG	-			P-0012366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	98	87	0	ENST00000245479.2:c.1127_1136del	p.Gln376ArgfsTer4	p.Q376Rfs*4	ENST00000245479	NM_000346.3	375	caGCAGCCACAG/ca						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112136982	112136983	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0012366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	97	282	0	ENST00000257430.4:c.738_739del	p.Gln247GlufsTer4	p.Q247Efs*4	ENST00000257430	NM_000038.5	246	TCt/t						NEWRECORD																																																																									
NCOA3	8202	MSKCC	GRCh37	20	46265057	46265057	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1151	1391	1291	0	ENST00000371998.3:c.1927G>C	p.Asp643His	p.D643H	ENST00000371998		643	Gat/Cat						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	296	551	0	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508539	106508539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	87	198	0	ENST00000359195.3:c.533G>A	p.Arg178His	p.R178H	ENST00000359195	NM_002649.2	178	cGt/cAt						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8341228	8341228	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	50	584	0	ENST00000356435.5:c.4988G>C	p.Ser1663Thr	p.S1663T	ENST00000356435		1663	aGt/aCt						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72991901	72991901	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	581	786	0	ENST00000268489.5:c.2144G>C	p.Arg715Pro	p.R715P	ENST00000268489	NM_006885.3	715	cGa/cCa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	51	176	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	567	389	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0012049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	359	385	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185190894	185190894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	303	737	0	ENST00000265026.3:c.1775G>A	p.Arg592Gln	p.R592Q	ENST00000265026	NM_004721.4	592	cGa/cAa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8517974	8517974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	169	547	0	ENST00000356435.5:c.1417G>T	p.Asp473Tyr	p.D473Y	ENST00000356435		473	Gac/Tac						NEWRECORD																																																																									
FANCC	2176	MSKCC	GRCh37	9	97873774	97873774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	283	336	0	ENST00000289081.3:c.1300G>A	p.Asp434Asn	p.D434N	ENST00000289081	NM_000136.2	434	Gat/Aat						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43609021	43609021	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	241	690	0	ENST00000355710.3:c.1777G>C	p.Gly593Arg	p.G593R	ENST00000355710	NM_020975.4	593	Gga/Cga						NEWRECORD																																																																									
ETV6	2120	MSKCC	GRCh37	12	12006363	12006363	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0012049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1290	163	401	1	ENST00000396373.4:c.331G>T	p.Asp111Tyr	p.D111Y	ENST00000396373	NM_001987.4	111	Gat/Tat						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49415854	49415854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	438	484	0	ENST00000301067.7:c.16493C>G	p.Ser5498Cys	p.S5498C	ENST00000301067	NM_003482.3	5498	tCc/tGc						NEWRECORD																																																																									
MAX	4149	MSKCC	GRCh37	14	65569030	65569030	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	774	488	0	ENST00000358664.4:c.28G>T	p.Glu10Ter	p.E10*	ENST00000358664	NM_002382.4	10	Gag/Tag						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10250929	10250929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	246	367	0	ENST00000340748.4:c.3551C>G	p.Ser1184Cys	p.S1184C	ENST00000340748		1184	tCc/tGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs17849781		P-0012447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	534	568	2	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0012447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	156	254	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198274526	198274526	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	88	571	0	ENST00000335508.6:c.872A>T	p.Asn291Ile	p.N291I	ENST00000335508	NM_012433.2	291	aAc/aTc						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249520	153249520	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	88	358	0	ENST00000281708.4:c.1258C>G	p.His420Asp	p.H420D	ENST00000281708	NM_033632.3	420	Cat/Gat						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153258953	153258953	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0012447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	183	432	0	ENST00000281708.4:c.861+1G>A		p.X287_splice	ENST00000281708	NM_033632.3	287							NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145737572	145737572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	212	419	0	ENST00000428558.2:c.3191G>A	p.Arg1064His	p.R1064H	ENST00000428558	NM_004260.3	1064	cGc/cAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578445	7578445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	31	422	0	ENST00000269305.4:c.485T>G	p.Ile162Ser	p.I162S	ENST00000269305	NM_001126112.2	162	aTc/aGc						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81334804	81334804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	25	420	0	ENST00000222390.5:c.1912G>A	p.Gly638Arg	p.G638R	ENST00000222390	NM_000601.4	638	Gga/Aga						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46240704	46240704	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0012161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	35	463	0	ENST00000334344.6:c.1564A>T	p.Lys522Ter	p.K522*	ENST00000334344	NM_152641.2	522	Aag/Tag						NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50912904	50912904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	87	922	1	ENST00000440232.2:c.2135C>T	p.Pro712Leu	p.P712L	ENST00000440232	NM_002691.3	712	cCg/cTg						NEWRECORD																																																																									
NKX2-1	7080	MSKCC	GRCh37	14	36987135	36987135	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	19	231	0	ENST00000354822.5:c.554del	p.Pro185ArgfsTer43	p.P185Rfs*43	ENST00000354822	NM_001079668.2	185	cCg/cg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0014972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	24	612	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0014972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	22	364	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	22	575	0	ENST00000269305.4:c.503A>T	p.His168Leu	p.H168L	ENST00000269305	NM_001126112.2	168	cAc/cTc						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115110057	115110057	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	117	833	0	ENST00000257566.3:c.1821C>A	p.Tyr607Ter	p.Y607*	ENST00000257566	NM_016569.3	607	taC/taA						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28891679	28891679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	57	562	0	ENST00000282397.4:c.3342G>T	p.Arg1114Ser	p.R1114S	ENST00000282397	NM_002019.4	1114	agG/agT						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28895598	28895599	+	splice_donor_variant	Splice_Site	DEL	AC	AC	-			P-0014972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	39	419	1	ENST00000282397.4:c.3174+1_3174+2del		p.X1058_splice	ENST00000282397	NM_002019.4	1058							NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41243635	41243635	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	57	524	0	ENST00000357654.3:c.3913G>T	p.Asp1305Tyr	p.D1305Y	ENST00000357654	NM_007294.3	1305	Gac/Tac						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10597395	10597395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	85	661	1	ENST00000171111.5:c.1808G>A	p.Gly603Glu	p.G603E	ENST00000171111	NM_203500.1	603	gGg/gAg						NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215657156	215657156	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	38	325	0	ENST00000260947.4:c.229G>C	p.Asp77His	p.D77H	ENST00000260947	NM_000465.2	77	Gac/Cac						NEWRECORD																																																																									
PDCD1	5133	MSKCC	GRCh37	2	242795109	242795109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	75	698	1	ENST00000334409.5:c.100C>A	p.Pro34Thr	p.P34T	ENST00000334409	NM_005018.2	34	Ccc/Acc						NEWRECORD																																																																									
ERG	2078	MSKCC	GRCh37	21	39795386	39795386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	59	583	0	ENST00000288319.7:c.334C>A	p.His112Asn	p.H112N	ENST00000288319	NM_182918.3	112	Cac/Aac						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	94066599	94066600	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0014972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	51	510	0	ENST00000369303.4:c.1159_1160delinsTT	p.Gly387Leu	p.G387L	ENST00000369303	NM_004440.3	387	GGa/TTa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013822-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			615	165	661	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112170647	112170647	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0013822-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			212	86	360	0	ENST00000257430.4:c.1744-1G>A		p.X582_splice	ENST00000257430	NM_000038.5	582							NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95582801	95582801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013822-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			245	68	258	0	ENST00000343455.3:c.1741G>A	p.Ala581Thr	p.A581T	ENST00000343455	NM_177438.2	581	Gct/Act						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45374903	45374903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013822-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			454	206	711	0	ENST00000262160.6:c.940G>A	p.Gly314Ser	p.G314S	ENST00000262160	NM_005901.5	314	Ggt/Agt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604700	48604701	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0013822-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	133	466	1	ENST00000342988.3:c.1522_1523delinsTT	p.Gly508Phe	p.G508F	ENST00000342988	NM_005359.5	508	GGc/TTc						NEWRECORD																																																																									
SMARCB1	6598	MSKCC	GRCh37	22	24145598	24145598	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013822-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			777	232	781	0	ENST00000263121.7:c.617G>A	p.Trp206Ter	p.W206*	ENST00000263121	NM_003073.3	206	tGg/tAg						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41574565	41574565	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013822-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	286	1098	0	ENST00000263253.7:c.6850A>G	p.Met2284Val	p.M2284V	ENST00000263253	NM_001429.3	2284	Atg/Gtg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	325	249	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577075	7577079	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTC	TTCTC	-			P-0013790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	675	566	0	ENST00000269305.4:c.859_863del	p.Glu287SerfsTer17	p.E287Sfs*17	ENST00000269305	NM_001126112.2	287	GAGAAt/t						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11168975	11168975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	137	530	1	ENST00000344626.4:c.4469C>T	p.Ser1490Leu	p.S1490L	ENST00000344626	NM_003072.3	1490	tCg/tTg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41306541	41306541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	161	437	1	ENST00000373198.4:c.1118C>T	p.Pro373Leu	p.P373L	ENST00000373198	NM_133170.3	373	cCa/cTa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242487	+	protein_altering_variant	In_Frame_Del	DEL	GAATTAAGAGAAGCAACATCTC	GAATTAAGAGAAGCAACATCTC	ATCT			P-0013790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	905	515	2	ENST00000275493.2:c.2236_2257delinsATCT	p.Glu746_Pro753delinsIleSer	p.E746_P753delinsIS	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCAACATCTCcg/ATCTcg						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151848628	151848628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1242	136	431	0	ENST00000262189.6:c.12565G>A	p.Glu4189Lys	p.E4189K	ENST00000262189	NM_170606.2	4189	Gaa/Aaa						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98209504	98209504	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766315655		P-0013790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	155	384	4	ENST00000331920.6:c.4034G>A	p.Arg1345His	p.R1345H	ENST00000331920	NM_000264.3	1345	cGt/cAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0014466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	74	274	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0014466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	161	621	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	126	641	2	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27107125	27107125	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	96	426	0	ENST00000324856.7:c.6736G>T	p.Glu2246Ter	p.E2246*	ENST00000324856	NM_006015.4	2246	Gag/Tag						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220382	1220382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	112	503	1	ENST00000326873.7:c.475C>T	p.Gln159Ter	p.Q159*	ENST00000326873	NM_000455.4	159	Cag/Tag						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42021492	42021492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	167	662	0	ENST00000219905.7:c.3788C>T	p.Ser1263Leu	p.S1263L	ENST00000219905	NM_001164273.1	1263	tCa/tTa						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5222886	5222886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	83	474	1	ENST00000357368.4:c.2917G>A	p.Gly973Ser	p.G973S	ENST00000357368	NM_002850.3	973	Ggt/Agt						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47098929	47098929	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	64	558	0	ENST00000409792.3:c.6345del	p.Lys2115AsnfsTer32	p.K2115Nfs*32	ENST00000409792	NM_014159.6	2115	aaA/aa						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149510101	149510101	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0014466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	111	504	0	ENST00000261799.4:c.1367+1del		p.X456_splice	ENST00000261799	NM_002609.3	456							NEWRECORD																																																																									
MSH3	4437	MSKCC	GRCh37	5	80168985	80168986	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0014620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	36	713	0	ENST00000265081.6:c.3183_3184del	p.Gly1062AsnfsTer12	p.G1062Nfs*12	ENST00000265081	NM_002439.4	1061	AGa/a						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8523519	8523519	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	64	396	0	ENST00000356435.5:c.685C>T	p.Arg229Ter	p.R229*	ENST00000356435		229	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007757-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			910	516	460	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007757-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	221	533	0	ENST00000269305.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000269305	NM_001126112.2	105	Ggc/Tgc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8339016	8339016	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007757-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	200	490	0	ENST00000356435.5:c.5285G>C	p.Arg1762Pro	p.R1762P	ENST00000356435		1762	cGg/cCg						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	10274198	10274198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007757-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			535	58	224	0	ENST00000330684.3:c.71G>A	p.Ser24Asn	p.S24N	ENST00000330684	NM_001134407.1	24	aGc/aAc						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56435056	56435056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007757-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			814	193	371	0	ENST00000407977.2:c.2081C>T	p.Pro694Leu	p.P694L	ENST00000407977		694	cCa/cTa						NEWRECORD																																																																									
MAP2K2	5605	MSKCC	GRCh37	19	4101082	4101082	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007757-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			427	77	212	0	ENST00000262948.5:c.640G>T	p.Gly214Trp	p.G214W	ENST00000262948	NM_030662.3	214	Ggg/Tgg						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11129674	11129674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007757-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1168	210	568	2	ENST00000344626.4:c.2480C>T	p.Pro827Leu	p.P827L	ENST00000344626	NM_003072.3	827	cCc/cTc						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53223685	53223685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007757-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1296	120	684	0	ENST00000375401.3:c.3674C>T	p.Pro1225Leu	p.P1225L	ENST00000375401	NM_004187.3	1225	cCc/cTc						NEWRECORD																																																																									
SH2D1A	4068	MSKCC	GRCh37	X	123480505	123480505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007757-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	136	379	0	ENST00000371139.4:c.13G>T	p.Ala5Ser	p.A5S	ENST00000371139	NM_001114937.2	5	Gct/Tct						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	37	509	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0014670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1174	56	797	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	27	350	0	ENST00000342988.3:c.1157G>T	p.Gly386Val	p.G386V	ENST00000342988	NM_005359.5	386	gGt/gTt						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65309745	65309745	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0014670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	42	409	0	ENST00000342505.4:c.2403+2T>G		p.X801_splice	ENST00000342505	NM_002227.2	801							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	203	431	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	226	694	1	ENST00000269305.4:c.833delC	p.Pro278LeufsTer67	p.P278Lfs*67	ENST00000269305	NM_001126112.2	278	cCt/ct						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48951001	48951105	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATTCTGATTACACAGTATCCTCGACATTGATTTCTGTTTTTACCTCCTAAAGAACTGCACAGTGAATCCAAAAGAAAGTATACTGAAAAGAGTGAAGGATATAG	AATTCTGATTACACAGTATCCTCGACATTGATTTCTGTTTTTACCTCCTAAAGAACTGCACAGTGAATCCAAAAGAAAGTATACTGAAAAGAGTGAAGGATATAG	TCTCTTTAAAGATGTATCCTATATCCTTCAC			P-0013720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	49	295	2	ENST00000267163.4:c.1216-53_1267delinsTCTCTTTAAAGATGTATCCTATATCCTTCAC		p.X406_splice	ENST00000267163	NM_000321.2	406							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579359	7579359	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587780066		P-0013798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	307	632	0	ENST00000269305.4:c.328del	p.Arg110ValfsTer13	p.R110Vfs*13	ENST00000269305	NM_001126112.2	110	Cgt/gt						NEWRECORD																																																																									
CDK4	1019	MSKCC	GRCh37	12	58143032	58143032	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	152	550	0	ENST00000257904.6:c.752C>G	p.Pro251Arg	p.P251R	ENST00000257904	NM_000075.3	251	cCc/cGc						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32163618	32163618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	86	467	0	ENST00000375023.3:c.5608C>A	p.Pro1870Thr	p.P1870T	ENST00000375023	NM_004557.3	1870	Cct/Act						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0010373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	157	425	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	148	307	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0010373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	91	98	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga						NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35873712	35873712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	62	411	0	ENST00000303115.3:c.668G>A	p.Ser223Asn	p.S223N	ENST00000303115	NM_002185.3	223	aGt/aAt						NEWRECORD																																																																									
MEF2B	100271849	MSKCC	GRCh37	19	19257633	19257635	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-			P-0010373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1710	126	711	0	ENST00000162023.5:c.591_593del	p.Pro199del	p.P199del	ENST00000162023		197	ccACCc/ccc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0010267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	242	393	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0010267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	253	456	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120459037	120459037	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	121	493	0	ENST00000256646.2:c.6308C>G	p.Ser2103Cys	p.S2103C	ENST00000256646	NM_024408.3	2103	tCt/tGt						NEWRECORD																																																																									
TMEM127	55654	MSKCC	GRCh37	2	96919571	96919571	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1345	306	810	0	ENST00000258439.3:c.692A>T	p.Gln231Leu	p.Q231L	ENST00000258439	NM_001193304.2	231	cAg/cTg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178917510	178917510	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	86	462	0	ENST00000263967.3:c.385G>C	p.Asp129His	p.D129H	ENST00000263967	NM_006218.2	129	Gat/Cat						NEWRECORD																																																																									
HIST1H2BD	3017	MSKCC	GRCh37	6	26158696	26158696	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	12	48	1	ENST00000289316.2:c.299G>T	p.Arg100Leu	p.R100L	ENST00000289316	NM_138720.2	100	cGc/cTc						NEWRECORD																																																																									
NCOA3	8202	MSKCC	GRCh37	20	46275898	46275898	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	645	991	2	ENST00000371998.3:c.3334G>T	p.Gly1112Ter	p.G1112*	ENST00000371998		1112	Gga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0010650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	31	473	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0010650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	32	489	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	180	550	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg						NEWRECORD																																																																									
AURKB	9212	MSKCC	GRCh37	17	8108259	8108259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	203	526	0	ENST00000585124.1:c.965C>T	p.Ser322Leu	p.S322L	ENST00000585124	NM_004217.3	322	tCa/tTa						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47059223	47059223	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	227	359	0	ENST00000409792.3:c.7438C>G	p.Gln2480Glu	p.Q2480E	ENST00000409792	NM_014159.6	2480	Cag/Gag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55273230	55273230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	317	471	0	ENST00000275493.2:c.3553G>A	p.Gly1185Ser	p.G1185S	ENST00000275493	NM_005228.3	1185	Ggc/Agc						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37673793	37673793	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2901	299	337	0	ENST00000447079.4:c.2947C>G	p.Arg983Gly	p.R983G	ENST00000447079	NM_015083.1	983	Cga/Gga						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11141512	11141513	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0012056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	277	515	0	ENST00000344626.4:c.3489_3490delinsTT	p.Asn1164Tyr	p.N1164Y	ENST00000344626	NM_003072.3	1163	ctGAac/ctTTac						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134977858	134977858	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	60	370	0	ENST00000398015.3:c.2851C>A	p.Leu951Ile	p.L951I	ENST00000398015	NM_004441.4	951	Ctc/Atc						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108168092	108168092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	59	384	0	ENST00000278616.4:c.4988G>T	p.Gly1663Val	p.G1663V	ENST00000278616	NM_000051.3	1663	gGt/gTt						NEWRECORD																																																																									
HNF1A	6927	MSKCC	GRCh37	12	121435391	121435391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	52	391	0	ENST00000257555.6:c.1424C>T	p.Pro475Leu	p.P475L	ENST00000257555		475	cCg/cTg						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68842459	68842459	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	47	304	0	ENST00000261769.5:c.520A>T	p.Asn174Tyr	p.N174Y	ENST00000261769	NM_004360.3	174	Aac/Tac						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40827928	40827928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	63	471	0	ENST00000373198.4:c.2500C>A	p.Arg834Ser	p.R834S	ENST00000373198	NM_133170.3	834	Cgc/Agc						NEWRECORD																																																																									
CRLF2	64109	MSKCC	GRCh37	X	1317461	1317461	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0011041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	77	546	0				ENST00000381566									NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39933515	39933515	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	57	486	0	ENST00000378444.4:c.1084G>T	p.Ala362Ser	p.A362S	ENST00000378444	NM_001123385.1	362	Gcc/Tcc						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76972671	76972671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	79	563	0	ENST00000373344.5:c.70C>A	p.His24Asn	p.H24N	ENST00000373344	NM_000489.3	24	Cac/Aac						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108155145	108155145	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	65	421	0	ENST00000278616.4:c.3938del	p.Glu1313GlyfsTer36	p.E1313Gfs*36	ENST00000278616	NM_000051.3	1313	gAg/gg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220597	1220597	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	52	373	0	ENST00000326873.7:c.616del	p.Ala206ArgfsTer81	p.A206Rfs*81	ENST00000326873	NM_000455.4	205	gcG/gc						NEWRECORD																																																																									
NKX3-1	4824	MSKCC	GRCh37	8	23539096	23539096	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	58	400	0	ENST00000380871.4:c.343del	p.Arg115GlyfsTer22	p.R115Gfs*22	ENST00000380871	NM_006167.3	115	Agg/gg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0011559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	24	457	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89390964	89390964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	53	491	0	ENST00000336596.2:c.1030G>A	p.Asp344Asn	p.D344N	ENST00000336596	NM_005233.5	344	Gac/Aac						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21557834	21557834	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	75	541	0	ENST00000382592.4:c.2011A>C	p.Ile671Leu	p.I671L	ENST00000382592	NM_014572.2	671	Atc/Ctc						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28959112	28959112	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	59	564	0	ENST00000282397.4:c.2026A>G	p.Ser676Gly	p.S676G	ENST00000282397	NM_002019.4	676	Agt/Ggt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	198	347	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	21	401	0	ENST00000356142.4:c.85C>A	p.Pro29Thr	p.P29T	ENST00000356142	NM_018890.3	29	Cct/Act						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49426196	49426196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	65	344	0	ENST00000301067.7:c.12292C>T	p.Pro4098Ser	p.P4098S	ENST00000301067	NM_003482.3	4098	Cca/Tca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0014066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	363	569	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	348142	348142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	55	448	0	ENST00000262320.3:c.1364G>T	p.Gly455Val	p.G455V	ENST00000262320	NM_003502.3	455	gGc/gTc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112137030	112137030	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	233	405	0	ENST00000257430.4:c.784G>T	p.Glu262Ter	p.E262*	ENST00000257430	NM_000038.5	262	Gaa/Taa						NEWRECORD																																																																									
HIST1H3E	8353	MSKCC	GRCh37	6	26225788	26225788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1318	487	1344	4	ENST00000360408.1:c.406G>A	p.Ala136Thr	p.A136T	ENST00000360408	NM_003532.2	136	Gcg/Acg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0013116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	428	474	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
RAD21	5885	MSKCC	GRCh37	8	117868903	117868903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1318	141	454	0	ENST00000297338.2:c.796G>A	p.Glu266Lys	p.E266K	ENST00000297338	NM_006265.2	266	Gag/Aag						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5090496	5090496	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	326	390	0	ENST00000381652.3:c.2812C>T	p.Arg938Ter	p.R938*	ENST00000381652	NM_004972.3	938	Cga/Tga						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63816969	63816969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	275	329	1	ENST00000279873.7:c.940G>A	p.Gly314Ser	p.G314S	ENST00000279873	NM_032199.2	314	Ggt/Agt						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49039506	49039506	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0013116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	497	355	1	ENST00000267163.4:c.2489+2T>C		p.X830_splice	ENST00000267163	NM_000321.2	830							NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63410035	63410035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	43	344	0	ENST00000330258.3:c.3132G>A	p.Met1044Ile	p.M1044I	ENST00000330258	NM_152424.3	1044	atG/atA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0011396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	199	505	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0011396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	106	260	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604673	48604673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	45	345	0	ENST00000342988.3:c.1495T>C	p.Cys499Arg	p.C499R	ENST00000342988	NM_005359.5	499	Tgc/Cgc						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39911598	39911598	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	259	259	0	ENST00000378444.4:c.5032C>G	p.Arg1678Gly	p.R1678G	ENST00000378444	NM_001123385.1	1678	Cgc/Ggc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112163671	112163671	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	93	490	0	ENST00000257430.4:c.1594C>T	p.Gln532Ter	p.Q532*	ENST00000257430	NM_000038.5	532	Caa/Taa						NEWRECORD																																																																									
NF2	4771	MSKCC	GRCh37	22	30051595	30051595	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	87	387	0	ENST00000338641.4:c.529T>C	p.Tyr177His	p.Y177H	ENST00000338641	NM_000268.3	177	Tat/Cat						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0012448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	206	487	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0013748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	135	756	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	150	668	0	ENST00000269305.4:c.731G>C	p.Gly244Ala	p.G244A	ENST00000269305	NM_001126112.2	244	gGc/gCc						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176673703	176673703	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	144	710	0	ENST00000439151.2:c.4403C>G	p.Pro1468Arg	p.P1468R	ENST00000439151	NM_022455.4	1468	cCa/cGa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	155	589	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
MAX	4149	MSKCC	GRCh37	14	65560500	65560500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1192	189	713	1	ENST00000358664.4:c.97C>T	p.Arg33Ter	p.R33*	ENST00000358664	NM_002382.4	33	Cga/Tga						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180052889	180052889	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	150	586	0	ENST00000261937.6:c.1401G>C	p.Lys467Asn	p.K467N	ENST00000261937	NM_182925.4	467	aaG/aaC						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1219938	1220553	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGGGCCTGCTGCCTGAGGCCAGTGGCCTGCTTCCAGCCCATCGCTGGCAGCCGCCTGCCCTGACCAGATCTCCTGGATGCAGGTCTGTGGCCTCAGAGTCAGGGCCCCTTGCTGCTGCAGGACCACAGGGGCAGGGAGGGGCCTGCTGTTCCAGCAAGACTTTGGGGTGCAGCCGGCCTGTGGCCCACAGGAAAATGAGACCTGTGGACATCCGGGGCCCTGCCAGACGTGGCTCGGCCGGACGAGGGTGGCCACTGCAGGCGCAGGTGTGGCTCCCTGCTGGACCTAGCCTTTCCTCTGTCCTGTGTGCCTGGACTTCTGTGACTTCCCAGCTGGGCCTGTGGTGTTTGGGAGGCTCCCAGGCAGCTGCAAAGGGGACCCCTGTGAGGGGCAGGGAGGCCTCGGCCCCAGGACGGGTGTGTGCTGCCCGCAGGTACTTCTGTCAGCTGATTGACGGCCTGGAGTACCTGCATAGCCAGGGCATTGTGCACAAGGACATCAAGCCGGGGAACCTGCTGCTCACCACCGGTGGCACCCTCAAAATCTCCGACCTGGGCGTGGCCGAGGTAGGCACGTGCTAGGGGGGGCCCTGGGGCGCCCCCTCCCGGGCACTCC	CTGGGCCTGCTGCCTGAGGCCAGTGGCCTGCTTCCAGCCCATCGCTGGCAGCCGCCTGCCCTGACCAGATCTCCTGGATGCAGGTCTGTGGCCTCAGAGTCAGGGCCCCTTGCTGCTGCAGGACCACAGGGGCAGGGAGGGGCCTGCTGTTCCAGCAAGACTTTGGGGTGCAGCCGGCCTGTGGCCCACAGGAAAATGAGACCTGTGGACATCCGGGGCCCTGCCAGACGTGGCTCGGCCGGACGAGGGTGGCCACTGCAGGCGCAGGTGTGGCTCCCTGCTGGACCTAGCCTTTCCTCTGTCCTGTGTGCCTGGACTTCTGTGACTTCCCAGCTGGGCCTGTGGTGTTTGGGAGGCTCCCAGGCAGCTGCAAAGGGGACCCCTGTGAGGGGCAGGGAGGCCTCGGCCCCAGGACGGGTGTGTGCTGCCCGCAGGTACTTCTGTCAGCTGATTGACGGCCTGGAGTACCTGCATAGCCAGGGCATTGTGCACAAGGACATCAAGCCGGGGAACCTGCTGCTCACCACCGGTGGCACCCTCAAAATCTCCGACCTGGGCGTGGCCGAGGTAGGCACGTGCTAGGGGGGGCCCTGGGGCGCCCCCTCCCGGGCACTCC	-			P-0013381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1	95	2	0	ENST00000326873.7:c.465-431_598-24del		p.X155_splice	ENST00000326873	NM_000455.4	155							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578265	7578266	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0013381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1149	142	678	0	ENST00000269305.4:c.583_584del	p.Ile195ProfsTer13	p.I195Pfs*13	ENST00000269305	NM_001126112.2	195	ATc/c						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	340	562	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	156	259	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156841466	156841466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	1299	537	2	ENST00000524377.1:c.769G>A	p.Asp257Asn	p.D257N	ENST00000524377	NM_002529.3	257	Gac/Aac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	108	426	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49431793	49431793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	51	512	0	ENST00000301067.7:c.9346C>T	p.Pro3116Ser	p.P3116S	ENST00000301067	NM_003482.3	3116	Cct/Tct						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47165283	47165283	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	27	242	2	ENST00000409792.3:c.843delA	p.Glu282LysfsTer19	p.E282Kfs*19	ENST00000409792	NM_014159.6	281	aaA/aa						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47038822	47038822	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	185	722	1	ENST00000329236.7:c.598C>T	p.Gln200Ter	p.Q200*	ENST00000329236	NM_001204466.1	200	Cag/Tag						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123179165	123179165	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	54	412	0	ENST00000218089.9:c.614C>G	p.Thr205Arg	p.T205R	ENST00000218089	NM_001042749.1	205	aCa/aGa						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65325803	65325803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	103	408	0	ENST00000342505.4:c.1319G>T	p.Cys440Phe	p.C440F	ENST00000342505	NM_002227.2	440	tGt/tTt						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100933424	100933424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	41	321	0	ENST00000325455.5:c.1966C>A	p.Leu656Ile	p.L656I	ENST00000325455	NM_001202474.3	656	Ctc/Atc						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28622411	28622411	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	72	323	0	ENST00000241453.7:c.1205+1G>T		p.X402_splice	ENST00000241453	NM_004119.2	402							NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48878185	48878185	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	24	233	0	ENST00000267163.4:c.137G>T	p.Arg46Met	p.R46M	ENST00000267163	NM_000321.2	46	aGg/aTg						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89348365	89348365	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	55	717	0	ENST00000301030.4:c.4585A>C	p.Lys1529Gln	p.K1529Q	ENST00000301030	NM_001256183.1	1529	Aaa/Caa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578518	7578518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1160	203	886	3	ENST00000269305.4:c.412G>A	p.Ala138Thr	p.A138T	ENST00000269305	NM_001126112.2	138	Gcc/Acc						NEWRECORD																																																																									
TCF3	6929	MSKCC	GRCh37	19	1623974	1623974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	123	491	1	ENST00000344749.5:c.525G>T	p.Lys175Asn	p.K175N	ENST00000344749	NM_001136139.2	175	aaG/aaT						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11098434	11098434	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	62	614	0	ENST00000344626.4:c.952del	p.Val318SerfsTer8	p.V318Sfs*8	ENST00000344626	NM_003072.3	318	Gtc/tc						NEWRECORD																																																																									
PRKCI	5584	MSKCC	GRCh37	3	169991085	169991085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	83	360	0	ENST00000295797.4:c.603G>T	p.Met201Ile	p.M201I	ENST00000295797	NM_002740.5	201	atG/atT						NEWRECORD																																																																									
AGO2	27161	MSKCC	GRCh37	8	141582974	141582974	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	204	649	0	ENST00000220592.5:c.273G>C	p.Lys91Asn	p.K91N	ENST00000220592	NM_012154.3	91	aaG/aaC						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8486175	8486175	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	33	297	0	ENST00000356435.5:c.2642C>A	p.Thr881Lys	p.T881K	ENST00000356435		881	aCa/aAa						NEWRECORD																																																																									
GATA1	2623	MSKCC	GRCh37	X	48651667	48651667	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	70	723	0	ENST00000376670.3:c.833T>C	p.Val278Ala	p.V278A	ENST00000376670	NM_002049.3	278	gTg/gCg						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53228223	53228223	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	81	638	2	ENST00000375401.3:c.2179G>T	p.Gly727Cys	p.G727C	ENST00000375401	NM_004187.3	727	Ggc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	105	505	2	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27057835	27057835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1380	155	893	1	ENST00000324856.7:c.1543C>T	p.Gln515Ter	p.Q515*	ENST00000324856	NM_006015.4	515	Cag/Tag						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56184141	56184141	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1277	96	578	1	ENST00000399503.3:c.4346G>A	p.Trp1449Ter	p.W1449*	ENST00000399503	NM_005921.1	1449	tGg/tAg						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11273502	11273502	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	50	422	0	ENST00000361445.4:c.3239G>T	p.Arg1080Leu	p.R1080L	ENST00000361445	NM_004958.3	1080	cGt/cTt						NEWRECORD																																																																									
CDKN2C	1031	MSKCC	GRCh37	1	51439790	51439790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	72	312	0	ENST00000262662.1:c.355G>T	p.Val119Leu	p.V119L	ENST00000262662		119	Gtg/Ttg						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115252217	115252217	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1338	71	609	0	ENST00000369535.4:c.423C>A	p.Phe141Leu	p.F141L	ENST00000369535	NM_002524.4	141	ttC/ttA						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162729746	162729746	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	114	519	0	ENST00000367921.3:c.832A>T	p.Ile278Phe	p.I278F	ENST00000367921	NM_006182.2	278	Atc/Ttc						NEWRECORD																																																																									
MSH2	4436	MSKCC	GRCh37	2	47703547	47703547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1188	184	646	3	ENST00000233146.2:c.2047G>T	p.Gly683Trp	p.G683W	ENST00000233146	NM_000251.2	683	Ggg/Tgg						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89499505	89499505	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	39	364	0	ENST00000336596.2:c.2675C>A	p.Thr892Asn	p.T892N	ENST00000336596	NM_005233.5	892	aCc/aAc						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32169006	32169006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1327	71	827	0	ENST00000375023.3:c.4027C>T	p.Pro1343Ser	p.P1343S	ENST00000375023	NM_004557.3	1343	Cct/Tct						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50444276	50444276	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144637662		P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	83	369	0	ENST00000331340.3:c.206G>A	p.Arg69His	p.R69H	ENST00000331340	NM_006060.4	69	cGt/cAt						NEWRECORD																																																																									
EZH2	2146	MSKCC	GRCh37	7	148512623	148512623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	70	467	0	ENST00000320356.2:c.1521C>G	p.His507Gln	p.H507Q	ENST00000320356	NM_004456.4	507	caC/caG						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5073740	5073740	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	61	539	0	ENST00000381652.3:c.1819A>T	p.Lys607Ter	p.K607*	ENST00000381652	NM_004972.3	607	Aag/Tag						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118307465	118307465	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	119	523	0	ENST00000534358.1:c.238G>C	p.Ala80Pro	p.A80P	ENST00000534358	NM_005933.3	80	Gcc/Ccc						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46230371	46230371	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	111	434	0	ENST00000334344.6:c.706-1G>C		p.X236_splice	ENST00000334344	NM_152641.2	236							NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46243487	46243487	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	108	613	0	ENST00000334344.6:c.1840C>T	p.Gln614Ter	p.Q614*	ENST00000334344	NM_152641.2	614	Cag/Tag						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46245765	46245765	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	115	467	1	ENST00000334344.6:c.3859G>T	p.Glu1287Ter	p.E1287*	ENST00000334344	NM_152641.2	1287	Gaa/Taa						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28883044	28883044	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	105	514	0	ENST00000282397.4:c.3656T>A	p.Phe1219Tyr	p.F1219Y	ENST00000282397	NM_002019.4	1219	tTc/tAc						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	29008242	29008242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1156	119	606	1	ENST00000282397.4:c.629C>T	p.Thr210Ile	p.T210I	ENST00000282397	NM_002019.4	210	aCa/aTa						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105241451	105241451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	127	606	0	ENST00000349310.3:c.529G>T	p.Ala177Ser	p.A177S	ENST00000349310	NM_001014432.1	177	Gcc/Tcc						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	41988376	41988376	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1718	126	1047	3	ENST00000219905.7:c.1168G>T	p.Asp390Tyr	p.D390Y	ENST00000219905	NM_001164273.1	390	Gac/Tac						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91333984	91333984	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	54	631	0	ENST00000355112.3:c.2929T>C	p.Ser977Pro	p.S977P	ENST00000355112	NM_000057.2	977	Tct/Cct						NEWRECORD																																																																									
MAPK3	5595	MSKCC	GRCh37	16	30134377	30134377	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1338	76	873	0	ENST00000263025.4:c.154G>C	p.Ala52Pro	p.A52P	ENST00000263025	NM_002746.2	52	Gcg/Ccg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207105	1207105	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	108	609	0	ENST00000326873.7:c.193G>T	p.Glu65Ter	p.E65*	ENST00000326873	NM_000455.4	65	Gag/Tag						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692893	89692893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	195	347	1	ENST00000371953.3:c.377C>T	p.Ala126Val	p.A126V	ENST00000371953	NM_000314.4	126	gCt/gTt						NEWRECORD																																																																									
INPPL1	3636	MSKCC	GRCh37	11	71943668	71943668	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0014816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	26	480	0	ENST00000298229.2:c.1713-2A>T		p.X571_splice	ENST00000298229	NM_001567.3	571							NEWRECORD																																																																									
INPPL1	3636	MSKCC	GRCh37	11	71948298	71948298	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	174	739	0	ENST00000298229.2:c.3011del	p.Pro1004LeufsTer127	p.P1004Lfs*127	ENST00000298229	NM_001567.3	1004	Cct/ct						NEWRECORD																																																																									
XIAP	331	MSKCC	GRCh37	X	123034522	123034522	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	104	357	0	ENST00000355640.3:c.1279A>G	p.Ser427Gly	p.S427G	ENST00000355640		427	Agt/Ggt						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	213	340	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt						NEWRECORD																																																																									
IRF4	3662	MSKCC	GRCh37	6	398867	398867	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1191	208	633	0	ENST00000380956.4:c.677C>A	p.Pro226His	p.P226H	ENST00000380956	NM_001195286.1	226	cCt/cAt						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44913074	44913074	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0012512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	508	565	0	ENST00000377967.4:c.749G>C	p.Gly250Ala	p.G250A	ENST00000377967	NM_021140.2	250	gGt/gCt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0010765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			996	120	604	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0010765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	422	570	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0010765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	84	417	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42042185	42042185	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	107	1090	0	ENST00000219905.7:c.6380C>G	p.Ser2127Ter	p.S2127*	ENST00000219905	NM_001164273.1	2127	tCa/tGa						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43608351	43608351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	79	731	2	ENST00000355710.3:c.1699G>T	p.Asp567Tyr	p.D567Y	ENST00000355710	NM_020975.4	567	Gac/Tac						NEWRECORD																																																																									
MYCL1	4610	MSKCC	GRCh37	1	40363589	40363589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	114	481	1	ENST00000397332.2:c.640C>T	p.Arg214Trp	p.R214W	ENST00000397332	NM_001033082.2	214	Cgg/Tgg						NEWRECORD																																																																									
PIK3R3	8503	MSKCC	GRCh37	1	46532645	46532645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	56	660	0	ENST00000262741.5:c.433C>T	p.Leu145Phe	p.L145F	ENST00000262741	NM_003629.3	145	Ctt/Ttt						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65303748	65303748	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	62	659	0	ENST00000342505.4:c.3007G>C	p.Asp1003His	p.D1003H	ENST00000342505	NM_002227.2	1003	Gac/Cac						NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48026836	48026836	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	44	640	2	ENST00000234420.5:c.1714C>T	p.Gln572Ter	p.Q572*	ENST00000234420	NM_000179.2	572	Cag/Tag						NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48026983	48026983	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	38	721	0	ENST00000234420.5:c.1861C>G	p.Leu621Val	p.L621V	ENST00000234420	NM_000179.2	621	Ctg/Gtg						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47125251	47125251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	82	802	0	ENST00000409792.3:c.6019G>A	p.Asp2007Asn	p.D2007N	ENST00000409792	NM_014159.6	2007	Gat/Aat						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47125359	47125359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	84	1001	2	ENST00000409792.3:c.5911G>A	p.Glu1971Lys	p.E1971K	ENST00000409792	NM_014159.6	1971	Gaa/Aaa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187534356	187534356	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770029391		P-0010765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	54	608	1	ENST00000441802.2:c.9370G>A	p.Glu3124Lys	p.E3124K	ENST00000441802	NM_005245.3	3124	Gaa/Aaa						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1294448	1294448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	34	347	0	ENST00000310581.5:c.553C>T	p.Arg185Trp	p.R185W	ENST00000310581	NM_198253.2	185	Cgg/Tgg						NEWRECORD																																																																									
FYN	2534	MSKCC	GRCh37	6	111982974	111982974	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	138	924	0	ENST00000368678.4:c.1573G>C	p.Glu525Gln	p.E525Q	ENST00000368678		525	Gag/Cag						NEWRECORD																																																																									
ETV1	2115	MSKCC	GRCh37	7	14027714	14027714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	71	771	0	ENST00000405192.2:c.130G>A	p.Glu44Lys	p.E44K	ENST00000405192	NM_001163147.1	44	Gaa/Aaa						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55372490	55372490	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	64	738	0	ENST00000297316.4:c.1180G>C	p.Ala394Pro	p.A394P	ENST00000297316	NM_022454.3	394	Gcc/Ccc						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91312418	91312418	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	66	684	0	ENST00000355112.3:c.2363T>A	p.Leu788His	p.L788H	ENST00000355112	NM_000057.2	788	cTc/cAc						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2126076	2126076	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1015	127	678	2	ENST00000219476.3:c.2647C>T	p.Gln883Ter	p.Q883*	ENST00000219476	NM_000548.3	883	Cag/Tag						NEWRECORD																																																																									
AKT2	208	MSKCC	GRCh37	19	40748473	40748473	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	115	720	0	ENST00000392038.2:c.409G>T	p.Glu137Ter	p.E137*	ENST00000392038	NM_001626.4	137	Gaa/Taa						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53239895	53239895	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	142	912	0	ENST00000375401.3:c.1546G>C	p.Glu516Gln	p.E516Q	ENST00000375401	NM_004187.3	516	Gag/Cag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	41	418	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
KNSTRN	90417	MSKCC	GRCh37	15	40675129	40675129	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	71	626	1	ENST00000249776.8:c.93C>A	p.Tyr31Ter	p.Y31*	ENST00000249776	NM_033286.3	31	taC/taA						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	34	421	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0010144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1317	51	774	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0010454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	51	253	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	392	270	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0010454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1361	106	381	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189582118	189582118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1120	75	315	0	ENST00000264731.3:c.677G>A	p.Arg226His	p.R226H	ENST00000264731	NM_003722.4	226	cGc/cAc						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55946206	55946206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1599	96	451	0	ENST00000263923.4:c.3973G>A	p.Glu1325Lys	p.E1325K	ENST00000263923	NM_002253.2	1325	Gaa/Aaa						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66197712	66197712	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	60	274	0	ENST00000273854.3:c.2987C>A	p.Ala996Asp	p.A996D	ENST00000273854	NM_004439.5	996	gCt/gAt						NEWRECORD																																																																									
HIST1H3F	8968	MSKCC	GRCh37	6	26250500	26250500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3394	330	1103	1	ENST00000446824.2:c.334G>A	p.Ala112Thr	p.A112T	ENST00000446824	NM_021018.2	112	Gct/Act						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40735454	40735454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1405	135	403	0	ENST00000373198.4:c.3419C>A	p.Ala1140Asp	p.A1140D	ENST00000373198	NM_133170.3	1140	gCc/gAc						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0012750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	297	363	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
CBFB	865	MSKCC	GRCh37	16	67100584	67100584	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0012750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	301	455	0	ENST00000412916.2:c.283-1G>A		p.X95_splice	ENST00000412916		95							NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115743	8115760	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAAACCGAAAAATGTC	CAGAAACCGAAAAATGTC	G			P-0012750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	96	723	0	ENST00000346208.3:c.1089_1106delinsG	p.Arg364Ter	p.R364*	ENST00000346208		363	acCAGAAACCGAAAAATGTCt/acGt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	428	515	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0012252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	221	373	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0012252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	168	303	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0014530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	88	567	1	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061113	38061120	+	frameshift_variant	Frame_Shift_Del	DEL	CTCAGGGC	CTCAGGGC	-			P-0014530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	26	256	0	ENST00000250448.2:c.869_876del	p.Gly290GlufsTer10	p.G290Efs*10	ENST00000250448	NM_004496.3	290	gGCCCTGAG/g						NEWRECORD																																																																									
GPS2	2874	MSKCC	GRCh37	17	7217891	7217891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	59	445	1	ENST00000380728.2:c.120G>A	p.Met40Ile	p.M40I	ENST00000380728		40	atG/atA						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150001340	150001340	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	68	610	0	ENST00000253339.5:c.2264A>G	p.Asp755Gly	p.D755G	ENST00000253339		755	gAt/gGt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0011131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	174	193	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0011131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	532	421	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	256	241	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134670476	134670476	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	310	324	0	ENST00000398015.3:c.387G>C	p.Trp129Cys	p.W129C	ENST00000398015	NM_004441.4	129	tgG/tgC						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174757	112174757	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	296	294	0	ENST00000257430.4:c.3466G>T	p.Glu1156Ter	p.E1156*	ENST00000257430	NM_000038.5	1156	Gaa/Taa						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18435277	18435277	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	389	370	0	ENST00000266497.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000266497		88	Gaa/Taa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	214	321	0	ENST00000269305.4:c.388del	p.Leu130SerfsTer40	p.L130Sfs*40	ENST00000269305	NM_001126112.2	130	Ctc/tc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	12	187	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
CDC73	79577	MSKCC	GRCh37	1	193099338	193099338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	18	220	0	ENST00000367435.3:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000367435	NM_024529.4	91	cGa/cAa						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149435895	149435895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	85	320	2	ENST00000286301.3:c.2329C>T	p.Arg777Trp	p.R777W	ENST00000286301	NM_005211.3	777	Cgg/Tgg						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106523589	106523589	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	35	304	0	ENST00000359195.3:c.2741A>T	p.Lys914Ile	p.K914I	ENST00000359195	NM_002649.2	914	aAa/aTa						NEWRECORD																																																																									
ARAF	369	MSKCC	GRCh37	X	47422661	47422661	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	130	670	0	ENST00000377045.4:c.133C>G	p.Leu45Val	p.L45V	ENST00000377045	NM_001654.4	45	Cta/Gta						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89349294	89349320	+	inframe_deletion	In_Frame_Del	DEL	TCCTTGTACTTTTCTGTGGACTCTTTA	TCCTTGTACTTTTCTGTGGACTCTTTA	-			P-0012971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	29	1028	0	ENST00000301030.4:c.3630_3656del	p.Lys1211_Asp1219del	p.K1211_D1219del	ENST00000301030	NM_001256183.1	1210	gaTAAAGAGTCCACAGAAAAGTACAAGGAc/gac						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48947588	48947595	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGTGAT	CAAGTGAT	-			P-0012971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	27	272	0	ENST00000267163.4:c.1178_1185del	p.Ser393ThrfsTer10	p.S393Tfs*10	ENST00000267163	NM_000321.2	392	gCAAGTGAT/g						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162743339	162743363	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGGTGGCTGTGAAAATGCTCCGA	CCTGGTGGCTGTGAAAATGCTCCGA	TG			P-0012971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	72	342	0	ENST00000367921.3:c.1809_1833delinsTG	p.Leu604GlyfsTer10	p.L604Gfs*10	ENST00000367921	NM_006182.2	603	gtCCTGGTGGCTGTGAAAATGCTCCGA/gtTG						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0015003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	135	348	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578196	7578196	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	336	827	1	ENST00000269305.4:c.653T>A	p.Val218Glu	p.V218E	ENST00000269305	NM_001126112.2	218	gTg/gAg						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156841541	156841541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1115	158	787	1	ENST00000524377.1:c.844G>A	p.Val282Ile	p.V282I	ENST00000524377	NM_002529.3	282	Gtc/Atc						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95569792	95569792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	54	278	0	ENST00000343455.3:c.3941G>A	p.Arg1314Gln	p.R1314Q	ENST00000343455	NM_177438.2	1314	cGg/cAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0010160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	97	405	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0010160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	239	345	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41268762	41268762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	50	503	0	ENST00000349496.5:c.1000G>A	p.Glu334Lys	p.E334K	ENST00000349496	NM_001904.3	334	Gaa/Aaa						NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	162683703	162683703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	112	385	0	ENST00000366898.1:c.266G>A	p.Arg89Lys	p.R89K	ENST00000366898	NM_004562.2	89	aGa/aAa						NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52723118	52723118	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0010160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	45	230	0	ENST00000322088.6:c.1302+1G>A		p.X434_splice	ENST00000322088	NM_014225.5	434							NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0010404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	153	648	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88679789	88679789	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	52	523	0	ENST00000360948.2:c.674A>G	p.Asp225Gly	p.D225G	ENST00000360948	NM_001012338.2	225	gAc/gGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0010062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1346	371	610	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112176027	112176027	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	40	382	0	ENST00000257430.4:c.4737del	p.Ile1580PhefsTer70	p.I1580Ffs*70	ENST00000257430	NM_000038.5	1579	aTt/at						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0010062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	132	462	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
FOXO1	2308	MSKCC	GRCh37	13	41240285	41240285	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1839	167	559	0	ENST00000379561.5:c.65C>G	p.Ser22Trp	p.S22W	ENST00000379561	NM_002015.3	22	tCg/tGg						NEWRECORD																																																																									
FOXP1	27086	MSKCC	GRCh37	3	71247373	71247373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	129	414	0	ENST00000318789.4:c.160G>A	p.Ala54Thr	p.A54T	ENST00000318789	NM_032682.5	54	Gcc/Acc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173377	112173377	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	43	501	0	ENST00000257430.4:c.2086G>T	p.Glu696Ter	p.E696*	ENST00000257430	NM_000038.5	696	Gaa/Taa						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56435653	56435653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	41	325	0	ENST00000407977.2:c.1484C>T	p.Ser495Phe	p.S495F	ENST00000407977		495	tCt/tTt						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151845524	151845524	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	59	600	0	ENST00000262189.6:c.13488T>A	p.Phe4496Leu	p.F4496L	ENST00000262189	NM_170606.2	4496	ttT/ttA						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100999303	100999303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	88	975	0	ENST00000325455.5:c.499C>T	p.Arg167Trp	p.R167W	ENST00000325455	NM_001202474.3	167	Cgg/Tgg						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32911788	32911788	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	79	1074	0	ENST00000380152.3:c.3296C>A	p.Ser1099Ter	p.S1099*	ENST00000380152		1099	tCa/tAa						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56435366	56435366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	75	532	0	ENST00000407977.2:c.1771C>T	p.Pro591Ser	p.P591S	ENST00000407977		591	Cca/Tca						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151945586	151945613	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCAATTTGATCTTCGCCACAAATATG	CTTCAATTTGATCTTCGCCACAAATATG	-			P-0012145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			68	14	109	0	ENST00000262189.6:c.1906_1933del	p.His636IlefsTer5	p.H636Ifs*5	ENST00000262189	NM_170606.2	636	CATATTTGTGGCGAAGATCAAATTGAAGat/at						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56435090	56435090	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	70	563	1	ENST00000407977.2:c.2047del	p.His683IlefsTer17	p.H683Ifs*17	ENST00000407977		683	Cat/at						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0011281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	158	208	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	190	428	0	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139413206	139413206	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	128	498	1	ENST00000277541.6:c.936C>A	p.Cys312Ter	p.C312*	ENST00000277541	NM_017617.3	312	tgC/tgA						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2216958	2216958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	87	402	0	ENST00000398665.3:c.2413G>A	p.Glu805Lys	p.E805K	ENST00000398665	NM_032482.2	805	Gag/Aag						NEWRECORD																																																																									
HIST2H3D	653604	MSKCC	GRCh37	1	149785221	149785221	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	31	59	0	ENST00000331491.1:c.16C>T	p.Gln6Ter	p.Q6*	ENST00000331491	NM_001123375.2	6	Cag/Tag						NEWRECORD																																																																									
SH2B3	10019	MSKCC	GRCh37	12	111884769	111884769	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1205	113	963	0	ENST00000341259.2:c.858C>G	p.Ile286Met	p.I286M	ENST00000341259	NM_005475.2	286	atC/atG						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110437102	110437107	+	inframe_deletion	In_Frame_Del	DEL	CATGGA	CATGGA	-			P-0013925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			38	18	51	0	ENST00000375856.3:c.1294_1299del	p.Ser432_Met433del	p.S432_M433del	ENST00000375856	NM_003749.2	432	TCCATG/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0013925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	311	656	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0014875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	540	627	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591891	48591892	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0014875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	23	459	1	ENST00000342988.3:c.1054_1055delinsTT	p.Gly352Leu	p.G352L	ENST00000342988	NM_005359.5	352	GGa/TTa						NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56871634	56871634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	109	459	0	ENST00000308159.5:c.2014G>A	p.Glu672Lys	p.E672K	ENST00000308159	NM_014669.4	672	Gaa/Aaa						NEWRECORD																																																																									
RAD51D	5892	MSKCC	GRCh37	17	33430499	33430499	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1275	367	813	1	ENST00000335858.7:c.305del	p.Pro102HisfsTer13	p.P102Hfs*13	ENST00000335858	NM_133629.2	102	cCa/ca						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575194	48575194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	20	296	0	ENST00000342988.3:c.388C>A	p.Pro130Thr	p.P130T	ENST00000342988	NM_005359.5	130	Cca/Aca						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575206	48575206	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	29	281	1	ENST00000342988.3:c.400del	p.Glu134AsnfsTer13	p.E134Nfs*13	ENST00000342988	NM_005359.5	134	Gaa/aa						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134873005	134873005	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183234182		P-0014875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	202	591	1	ENST00000398015.3:c.1309G>A	p.Val437Ile	p.V437I	ENST00000398015	NM_004441.4	437	Gtt/Att						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123224599	123224599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	441	565	0	ENST00000218089.9:c.3452C>T	p.Thr1151Ile	p.T1151I	ENST00000218089	NM_001042749.1	1151	aCa/aTa						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0010863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	1701	262	0	ENST00000397752.3:c.3028+1G>A		p.X1010_splice	ENST00000397752	NM_000245.2	1010							NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0013488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	139	494	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	302	624	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0013488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	315	697	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	205	440	1	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173926	112173926	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	259	496	1	ENST00000257430.4:c.2635C>T	p.Gln879Ter	p.Q879*	ENST00000257430	NM_000038.5	879	Cag/Tag						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11187847	11187847	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	161	322	0	ENST00000361445.4:c.6050T>C	p.Ile2017Thr	p.I2017T	ENST00000361445	NM_004958.3	2017	aTc/aCc						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55972029	55972029	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	148	710	0	ENST00000263923.4:c.1615G>C	p.Gly539Arg	p.G539R	ENST00000263923	NM_002253.2	539	Gga/Cga						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	167	416	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48581157	48581157	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	39	237	0	ENST00000342988.3:c.461C>G	p.Ser154Ter	p.S154*	ENST00000342988	NM_005359.5	154	tCa/tGa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0014752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	207	570	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133218396	133218396	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	184	631	0	ENST00000320574.5:c.5215A>G	p.Ile1739Val	p.I1739V	ENST00000320574	NM_006231.2	1739	Att/Gtt						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41514494	41514494	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	74	500	0	ENST00000373198.4:c.167A>G	p.Gln56Arg	p.Q56R	ENST00000373198	NM_133170.3	56	cAg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	195	519	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	368	957	0	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0010528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	467	711	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	206	676	1	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212576831	212576831	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	121	585	0	ENST00000342788.4:c.1068C>G	p.Phe356Leu	p.F356L	ENST00000342788	NM_005235.2	356	ttC/ttG						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30673055	30673055	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1760	270	1235	0	ENST00000376406.3:c.3905C>A	p.Thr1302Asn	p.T1302N	ENST00000376406	NM_014641.2	1302	aCc/aAc						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133235883	133235883	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0010528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	79	323	0	ENST00000320574.5:c.3273G>C	p.Glu1091Asp	p.E1091D	ENST00000320574	NM_006231.2	1091	gaG/gaC						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76937130	76937132	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0010528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	204	1294	0	ENST00000373344.5:c.3616_3618del	p.Ser1206del	p.S1206del	ENST00000373344	NM_000489.3	1206	TCT/-						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	52	438	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0013096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	90	677	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0013096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1445	116	882	4	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs121913370		P-0012308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	28	263	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1222982	1222982	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T	rs727504172		P-0012308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	27	281	0	ENST00000326873.7:c.921-2A>T		p.X307_splice	ENST00000326873	NM_000455.4	307							NEWRECORD																																																																									
BARD1	580	MSKCC	GRCh37	2	215645984	215645984	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	68	559	0	ENST00000260947.4:c.614A>C	p.Lys205Thr	p.K205T	ENST00000260947	NM_000465.2	205	aAg/aCg						NEWRECORD																																																																									
PGR	5241	MSKCC	GRCh37	11	100999111	100999111	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	57	753	1	ENST00000325455.5:c.691G>T	p.Glu231Ter	p.E231*	ENST00000325455	NM_001202474.3	231	Gag/Tag						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610099	10610099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	65	599	0	ENST00000171111.5:c.611G>C	p.Arg204Pro	p.R204P	ENST00000171111	NM_203500.1	204	cGg/cCg						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31387084	31387084	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	66	581	0	ENST00000328111.2:c.1709C>G	p.Ala570Gly	p.A570G	ENST00000328111	NM_006892.3	570	gCc/gGc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8331589	8331589	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	77	752	0	ENST00000356435.5:c.5527del	p.His1843IlefsTer13	p.H1843Ifs*13	ENST00000356435		1843	Cat/at						NEWRECORD																																																																									
PIK3CD	5293	MSKCC	GRCh37	1	9776011	9776011	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	428	283	0	ENST00000377346.4:c.475T>A	p.Trp159Arg	p.W159R	ENST00000377346	NM_005026.3	159	Tgg/Agg						NEWRECORD																																																																									
CDKN2C	1031	MSKCC	GRCh37	1	51439730	51439730	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	323	283	0	ENST00000262662.1:c.295G>T	p.Glu99Ter	p.E99*	ENST00000262662		99	Gag/Tag						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156838344	156838344	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2108	298	359	0	ENST00000524377.1:c.622G>T	p.Gly208Trp	p.G208W	ENST00000524377	NM_002529.3	208	Ggg/Tgg						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162740252	162740252	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2094	122	314	0	ENST00000367921.3:c.1454C>G	p.Ser485Cys	p.S485C	ENST00000367921	NM_006182.2	485	tCc/tGc						NEWRECORD																																																																									
MDM4	4194	MSKCC	GRCh37	1	204518745	204518745	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	276	263	0	ENST00000367182.3:c.1408G>T	p.Ala470Ser	p.A470S	ENST00000367182	NM_001278516.1	470	Gct/Tct						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99172272	99172272	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	312	295	0	ENST00000074304.5:c.1837+1G>T		p.X613_splice	ENST00000074304	NM_001134224.1	613							NEWRECORD																																																																									
SOX2	6657	MSKCC	GRCh37	3	181430673	181430673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	181	251	0	ENST00000325404.1:c.525G>T	p.Gln175His	p.Q175H	ENST00000325404	NM_003106.3	175	caG/caT						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55139846	55139846	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	191	255	0	ENST00000257290.5:c.1507G>C	p.Ala503Pro	p.A503P	ENST00000257290	NM_006206.4	503	Gct/Cct						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187630977	187630977	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	185	195	0	ENST00000441802.2:c.5G>T	p.Gly2Val	p.G2V	ENST00000441802	NM_005245.3	2	gGg/gTg						NEWRECORD																																																																									
SDHA	6389	MSKCC	GRCh37	5	235396	235396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1850	260	295	0	ENST00000264932.6:c.1202C>T	p.Pro401Leu	p.P401L	ENST00000264932	NM_004168.2	401	cCt/cTt						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1294051	1294051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2449	642	414	0	ENST00000310581.5:c.950G>T	p.Trp317Leu	p.W317L	ENST00000310581	NM_198253.2	317	tGg/tTg						NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35860965	35860965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1527	216	198	0	ENST00000303115.3:c.94G>A	p.Asp32Asn	p.D32N	ENST00000303115	NM_002185.3	32	Gat/Aat						NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35874565	35874565	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs141111406		P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2539	365	394	0	ENST00000303115.3:c.721A>G	p.Ile241Val	p.I241V	ENST00000303115	NM_002185.3	241	Atc/Gtc						NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35876316	35876316	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1867	222	266	0	ENST00000303115.3:c.1108C>A	p.Leu370Met	p.L370M	ENST00000303115	NM_002185.3	370	Ctg/Atg						NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35876530	35876530	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1576	102	209	0	ENST00000303115.3:c.1322T>C	p.Leu441Pro	p.L441P	ENST00000303115	NM_002185.3	441	cTg/cCg						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32166275	32166275	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	693	350	0	ENST00000375023.3:c.4679C>A	p.Ala1560Glu	p.A1560E	ENST00000375023	NM_004557.3	1560	gCg/gAg						NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	161969939	161969939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	318	346	0	ENST00000366898.1:c.1030G>A	p.Glu344Lys	p.E344K	ENST00000366898	NM_004562.2	344	Gag/Aag						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2959081	2959081	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	339	339	0	ENST00000396946.4:c.2435A>G	p.His812Arg	p.H812R	ENST00000396946	NM_032415.4	812	cAc/cGc						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41729984	41729984	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1638	592	553	2	ENST00000242208.4:c.545C>A	p.Pro182Gln	p.P182Q	ENST00000242208	NM_002192.2	182	cCg/cAg						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8341160	8341160	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			938	271	311	0	ENST00000356435.5:c.5056G>C	p.Val1686Leu	p.V1686L	ENST00000356435		1686	Gta/Cta						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8484345	8484345	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	205	276	0	ENST00000356435.5:c.3187G>C	p.Val1063Leu	p.V1063L	ENST00000356435		1063	Gtg/Ctg						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70333051	70333051	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	976	389	0	ENST00000373644.4:c.956G>T	p.Gly319Val	p.G319V	ENST00000373644	NM_030625.2	319	gGg/gTg						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64574547	64574547	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	365	353	0	ENST00000337652.1:c.863T>C	p.Leu288Pro	p.L288P	ENST00000337652	NM_130803.2	288	cTg/cCg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108121778	108121778	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	180	202	0	ENST00000278616.4:c.1586G>T	p.Gly529Val	p.G529V	ENST00000278616	NM_000051.3	529	gGg/gTg						NEWRECORD																																																																									
CBL	867	MSKCC	GRCh37	11	119144576	119144576	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	59	223	0	ENST00000264033.4:c.591-2A>T		p.X197_splice	ENST00000264033	NM_005188.3	197							NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	442694	442694	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1196	869	366	0	ENST00000399788.2:c.1612A>T	p.Thr538Ser	p.T538S	ENST00000399788	NM_001042603.1	538	Acc/Tcc						NEWRECORD																																																																									
H3F3C	440093	MSKCC	GRCh37	12	31944879	31944879	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	508	256	0	ENST00000340398.3:c.222C>G	p.Ile74Met	p.I74M	ENST00000340398	NM_001013699.2	74	atC/atG						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73346016	73346016	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	244	223	0	ENST00000377767.4:c.1522G>T	p.Asp508Tyr	p.D508Y	ENST00000377767	NM_014953.3	508	Gat/Tat						NEWRECORD																																																																									
ERCC5	2073	MSKCC	GRCh37	13	103515219	103515219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	907	299	0	ENST00000355739.4:c.1720G>T	p.Ala574Ser	p.A574S	ENST00000355739	NM_000123.3	574	Gct/Tct						NEWRECORD																																																																									
MAX	4149	MSKCC	GRCh37	14	65544640	65544640	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	737	353	1	ENST00000358664.4:c.286G>T	p.Glu96Ter	p.E96*	ENST00000358664	NM_002382.4	96	Gag/Tag						NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45007636	45007636	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	114	197	0	ENST00000558401.1:c.83A>T	p.Gln28Leu	p.Q28L	ENST00000558401	NM_004048.2	28	cAg/cTg						NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45007672	45007672	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	132	212	0	ENST00000558401.1:c.119C>G	p.Ser40Ter	p.S40*	ENST00000558401	NM_004048.2	40	tCa/tGa						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91347474	91347474	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	381	340	0	ENST00000355112.3:c.3636A>C	p.Glu1212Asp	p.E1212D	ENST00000355112	NM_000057.2	1212	gaA/gaC						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72992298	72992298	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1190	544	552	0	ENST00000268489.5:c.1747G>T	p.Glu583Ter	p.E583*	ENST00000268489	NM_006885.3	583	Gag/Tag						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72993039	72993039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	1192	549	0	ENST00000268489.5:c.1006C>T	p.Leu336Phe	p.L336F	ENST00000268489	NM_006885.3	336	Ctt/Ttt						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81819711	81819711	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	487	457	0	ENST00000359376.3:c.117G>T	p.Glu39Asp	p.E39D	ENST00000359376	NM_002661.3	39	gaG/gaT						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81942049	81942049	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	525	478	0	ENST00000359376.3:c.1586G>T	p.Gly529Val	p.G529V	ENST00000359376	NM_002661.3	529	gGg/gTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	938	455	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29553474	29553474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1200	199	271	0	ENST00000358273.4:c.2023G>A	p.Gly675Arg	p.G675R	ENST00000358273	NM_001042492.2	675	Gga/Aga						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29663413	29663413	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	461	290	0	ENST00000358273.4:c.6069G>C	p.Leu2023Phe	p.L2023F	ENST00000358273	NM_001042492.2	2023	ttG/ttC						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39537584	39537584	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	642	303	0	ENST00000262039.4:c.118G>T	p.Glu40Ter	p.E40*	ENST00000262039	NM_002647.2	40	Gaa/Taa						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238758086		P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	705	373	1	ENST00000358026.2:c.2729C>T	p.Thr910Met	p.T910M	ENST00000358026	NM_001128849.1	910	aCg/aTg						NEWRECORD																																																																									
DNAJB1	3337	MSKCC	GRCh37	19	14628993	14628993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1516	204	468	0	ENST00000254322.2:c.169G>A	p.Asp57Asn	p.D57N	ENST00000254322	NM_006145.1	57	Gac/Aac						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15271516	15271516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1188	446	383	0	ENST00000263388.2:c.6923G>T	p.Gly2308Val	p.G2308V	ENST00000263388	NM_000435.2	2308	gGg/gTg						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15302372	15302372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1274	385	409	0	ENST00000263388.2:c.899G>T	p.Cys300Phe	p.C300F	ENST00000263388	NM_000435.2	300	tGc/tTc						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15302679	15302679	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	583	370	0	ENST00000263388.2:c.680-1G>C		p.X227_splice	ENST00000263388	NM_000435.2	227							NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17955129	17955129	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	1240	313	0	ENST00000458235.1:c.98G>T	p.Arg33Leu	p.R33L	ENST00000458235	NM_000215.3	33	cGg/cTg						NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52714660	52714660	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1248	127	325	0	ENST00000322088.6:c.418T>A	p.Trp140Arg	p.W140R	ENST00000322088	NM_014225.5	140	Tgg/Agg						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39932488	39932488	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1564	84	218	0	ENST00000378444.4:c.2111A>G	p.Tyr704Cys	p.Y704C	ENST00000378444	NM_001123385.1	704	tAt/tGt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49446423	49446423	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	362	292	0	ENST00000301067.7:c.1182del	p.Gln395SerfsTer7	p.Q395Sfs*7	ENST00000301067	NM_003482.3	394	ggG/gg						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145741392	145741395	+	frameshift_variant	Frame_Shift_Del	DEL	TACG	TACG	-			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1465	974	447	0	ENST00000428558.2:c.1108_1111del	p.Arg370AlafsTer35	p.R370Afs*35	ENST00000428558	NM_004260.3	370	CGTAgc/gc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	192	573	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	222	337	0	ENST00000304494.5:c.262delG	p.Glu88ArgfsTer58	p.E88Rfs*58	ENST00000304494	NM_000077.4	88	Gag/ag						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118348846	118348846	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1317	88	631	0	ENST00000534358.1:c.3499T>A	p.Cys1167Ser	p.C1167S	ENST00000534358	NM_005933.3	1167	Tgt/Agt						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118348850	118348850	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1292	76	618	0	ENST00000534358.1:c.3503G>T	p.Gly1168Val	p.G1168V	ENST00000534358	NM_005933.3	1168	gGt/gTt						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89352513	89352513	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1481	233	978	0	ENST00000301030.4:c.826T>G	p.Ser276Ala	p.S276A	ENST00000301030	NM_001256183.1	276	Tcc/Gcc						NEWRECORD																																																																									
PPM1D	8493	MSKCC	GRCh37	17	58677957	58677957	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	129	543	0	ENST00000305921.3:c.182G>T	p.Gly61Val	p.G61V	ENST00000305921	NM_003620.3	61	gGc/gTc						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42794766	42794766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	112	589	0	ENST00000575354.2:c.1846G>A	p.Val616Ile	p.V616I	ENST00000575354	NM_015125.3	616	Gtc/Atc						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212251824	212251824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	72	533	0	ENST00000342788.4:c.3235G>A	p.Val1079Met	p.V1079M	ENST00000342788	NM_005235.2	1079	Gtg/Atg						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47098450	47098450	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0013569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1138	95	690	0	ENST00000409792.3:c.6824C>G	p.Ser2275Ter	p.S2275*	ENST00000409792	NM_014159.6	2275	tCa/tGa						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134851561	134851561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	160	498	1	ENST00000398015.3:c.967C>T	p.Pro323Ser	p.P323S	ENST00000398015	NM_004441.4	323	Cca/Tca						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	93956543	93956590	+	inframe_deletion	In_Frame_Del	DEL	TTTGGGTTTCGAATCATTTTGTCTAGAATTCCAACTATCTGTTCAAAT	TTTGGGTTTCGAATCATTTTGTCTAGAATTCCAACTATCTGTTCAAAT	-			P-0013569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1804	229	945	0	ENST00000369303.4:c.2646_2693del	p.Lys882_Pro897del	p.K882_P897del	ENST00000369303	NM_004440.3	882	aaATTTGAACAGATAGTTGGAATTCTAGACAAAATGATTCGAAACCCAAAt/aat						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70362032	70362032	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1586	112	905	0	ENST00000374080.3:c.6498G>C	p.Gln2166His	p.Q2166H	ENST00000374080		2166	caG/caC						NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0010899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	347	451	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0010899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	357	500	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913399		P-0010899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	414	551	4	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0010899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	359	430	2	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta						NEWRECORD																																																																									
HIST1H2BD	3017	MSKCC	GRCh37	6	26158539	26158539	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	207	355	0	ENST00000289316.2:c.142C>T	p.Gln48Ter	p.Q48*	ENST00000289316	NM_138720.2	48	Cag/Tag						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117642443	117642443	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	568	799	0	ENST00000368508.3:c.5756C>A	p.Ala1919Asp	p.A1919D	ENST00000368508	NM_002944.2	1919	gCt/gAt						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508260	106508260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	171	232	1	ENST00000359195.3:c.254C>T	p.Ala85Val	p.A85V	ENST00000359195	NM_002649.2	85	gCg/gTg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49431142	49431142	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	427	653	0	ENST00000301067.7:c.9997C>T	p.Gln3333Ter	p.Q3333*	ENST00000301067	NM_003482.3	3333	Cag/Tag						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47679370	47679370	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0010899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	238	374	0	ENST00000347630.2:c.838-1G>A		p.X280_splice	ENST00000347630	NM_001007230.1	280							NEWRECORD																																																																									
RPTOR	57521	MSKCC	GRCh37	17	78681777	78681777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	433	555	0	ENST00000306801.3:c.485G>A	p.Gly162Glu	p.G162E	ENST00000306801	NM_020761.2	162	gGg/gAg						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11101949	11101949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	309	447	1	ENST00000344626.4:c.1369G>A	p.Glu457Lys	p.E457K	ENST00000344626	NM_003072.3	457	Gag/Aag						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31022953	31022953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	437	599	0	ENST00000375687.4:c.2438C>T	p.Pro813Leu	p.P813L	ENST00000375687	NM_015338.5	813	cCc/cTc						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76874284	76874284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	488	337	0	ENST00000373344.5:c.5438G>A	p.Gly1813Glu	p.G1813E	ENST00000373344	NM_000489.3	1813	gGa/gAa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0013862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	10	254	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	57	320	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0010208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	73	408	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023202	27023202	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	41	279	0	ENST00000324856.7:c.308C>A	p.Ser103Ter	p.S103*	ENST00000324856	NM_006015.4	103	tCg/tAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0011158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	269	287	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0011158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	160	264	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt						NEWRECORD																																																																									
RAF1	5894	MSKCC	GRCh37	3	12645687	12645687	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	263	314	0	ENST00000251849.4:c.782C>G	p.Pro261Arg	p.P261R	ENST00000251849	NM_002880.3	261	cCt/cGt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0011158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	181	175	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175720	112175720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	142	248	0	ENST00000257430.4:c.4429C>T	p.Gln1477Ter	p.Q1477*	ENST00000257430	NM_000038.5	1477	Cag/Tag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921567	178921567	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	119	204	0	ENST00000263967.3:c.1049A>T	p.Asp350Val	p.D350V	ENST00000263967	NM_006218.2	350	gAc/gTc						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16068352	16068352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			9	15	14	0	ENST00000268712.3:c.559C>T	p.Arg187Cys	p.R187C	ENST00000268712	NM_006311.3	187	Cgt/Tgt						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115118683	115118683	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0010178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	148	568	1	ENST00000257566.3:c.657+1G>T		p.X219_splice	ENST00000257566	NM_016569.3	219							NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7117186	7117186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	43	877	0	ENST00000302850.5:c.4030G>A	p.Asp1344Asn	p.D1344N	ENST00000302850	NM_000208.2	1344	Gat/Aat						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	28903761	28903761	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	52	886	0	ENST00000282397.4:c.2698A>G	p.Lys900Glu	p.K900E	ENST00000282397	NM_002019.4	900	Aag/Gag						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37618930	37618930	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	144	694	3	ENST00000447079.4:c.610del	p.Arg204GlyfsTer134	p.R204Gfs*134	ENST00000447079	NM_015083.1	202	cgA/cg						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37676228	37676230	+	frameshift_variant	Frame_Shift_Del	DEL	GAT	GAT	AA			P-0012857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	113	895	0	ENST00000447079.4:c.2983_2985delinsAA	p.Asp995AsnfsTer7	p.D995Nfs*7	ENST00000447079	NM_015083.1	995	GAT/AA						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519972		P-0012324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	147	812	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac						NEWRECORD																																																																									
HIST1H3A	8350	MSKCC	GRCh37	6	26020719	26020719	+	start_lost	Translation_Start_Site	SNP	T	T	G			P-0012324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	62	1016	0	ENST00000357647.3:c.2T>G	p.Met1?	p.M1?	ENST00000357647	NM_003529.2	1	aTg/aGg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	129	473	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	16	591	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145739866	145739866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	71	810	0	ENST00000428558.2:c.1664C>T	p.Ser555Leu	p.S555L	ENST00000428558	NM_004260.3	555	tCg/tTg						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131944410	131944410	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	28	214	0	ENST00000265335.6:c.2822A>T	p.Gln941Leu	p.Q941L	ENST00000265335		941	cAg/cTg						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95572097	95572097	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	65	506	0	ENST00000343455.3:c.3011A>T	p.His1004Leu	p.H1004L	ENST00000343455	NM_177438.2	1004	cAt/cTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577504	7577504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	45	540	0	ENST00000269305.4:c.777C>A	p.Asp259Glu	p.D259E	ENST00000269305	NM_001126112.2	259	gaC/gaA						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9561324	9561324	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	56	486	0	ENST00000353224.5:c.458del	p.Gly153GlufsTer20	p.G153Efs*20	ENST00000353224	NM_177990.2	153	gGa/ga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	715	413	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0011191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	402	537	1	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49422611	49422611	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0011191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	470	434	0	ENST00000301067.7:c.14382G>C	p.Lys4794Asn	p.K4794N	ENST00000301067	NM_003482.3	4794	aaG/aaC						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971094	21971101	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCCGGG	CTCCCGGG	-			P-0011191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	281	250	0	ENST00000304494.5:c.257_264del	p.Ala86GlyfsTer31	p.A86Gfs*31	ENST00000304494	NM_000077.4	86	gCCCGGGAG/g						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971094	21971102	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCCGGGC	CTCCCGGGC	A			P-0011191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	281	250	0	ENST00000304494.5:c.256_264delinsT	p.Ala86TrpfsTer31	p.A86Wfs*31	ENST00000304494	NM_000077.4	86	GCCCGGGAG/T						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	153	279	0	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8331643	8331643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			938	227	593	0	ENST00000356435.5:c.5473G>A	p.Gly1825Ser	p.G1825S	ENST00000356435		1825	Ggc/Agc						NEWRECORD																																																																									
FLT1	2321	MSKCC	GRCh37	13	29001999	29001999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	99	329	1	ENST00000282397.4:c.1166C>T	p.Ser389Leu	p.S389L	ENST00000282397	NM_002019.4	389	tCg/tTg						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67650729	67650729	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1164	165	438	0	ENST00000264010.4:c.1034A>C	p.His345Pro	p.H345P	ENST00000264010	NM_006565.3	345	cAc/cCc						NEWRECORD																																																																									
EIF4A2	1974	MSKCC	GRCh37	3	186502859	186502899	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TATTGGCCCCCACCAGAGAACTGGCTCAACAGGTATTGATA	TATTGGCCCCCACCAGAGAACTGGCTCAACAGGTATTGATA	-			P-0010553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1149	162	748	0	ENST00000323963.5:c.317_348+9del		p.X106_splice	ENST00000323963		106							NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40944629	40944639	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATAAACACTG	GATAAACACTG	-			P-0014581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	135	227	0	ENST00000373198.4:c.1866-3_1873del		p.X622_splice	ENST00000373198	NM_133170.3	622							NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112179312	112179326	+	inframe_deletion	In_Frame_Del	DEL	CTCCCACAGGTAATA	CTCCCACAGGTAATA	-			P-0014581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	99	278	0	ENST00000257430.4:c.8026_8040del	p.Thr2676_Pro2680del	p.T2676_P2680del	ENST00000257430	NM_000038.5	2674	tCTCCCACAGGTAATAct/tct						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	60	421	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	43	552	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0014973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	263	606	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	554	447	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0010839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	342	733	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a						NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35871286	35871286	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145210284		P-0010839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	151	241	0	ENST00000303115.3:c.508C>T	p.Arg170Cys	p.R170C	ENST00000303115	NM_002185.3	170	Cgc/Tgc						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115118704	115118706	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0012998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	288	654	0	ENST00000257566.3:c.635_637del	p.Asn212del	p.N212del	ENST00000257566	NM_016569.3	212	aACAtt/att						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061220	38061225	+	inframe_deletion	In_Frame_Del	DEL	CGTTCT	CGTTCT	-			P-0012998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	207	535	0	ENST00000250448.2:c.764_769del	p.Glu255_Asn256del	p.E255_N256del	ENST00000250448	NM_004496.3	255	gAGAACGgc/ggc						NEWRECORD																																																																									
PPM1D	8493	MSKCC	GRCh37	17	58740479	58740479	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1391	569	985	0	ENST00000305921.3:c.1384C>T	p.Gln462Ter	p.Q462*	ENST00000305921	NM_003620.3	462	Caa/Taa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	37	504	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0012814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	20	335	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577029	7577042	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCCCTGGGGGCA	GCTCCCTGGGGGCA	-			P-0012814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	42	548	0	ENST00000269305.4:c.896_909del	p.Leu299HisfsTer2	p.L299Hfs*2	ENST00000269305	NM_001126112.2	299	cTGCCCCCAGGGAGC/c						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	138	625	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27099026	27099026	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	75	721	0	ENST00000324856.7:c.3442C>T	p.Gln1148Ter	p.Q1148*	ENST00000324856	NM_006015.4	1148	Cag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	67	462	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0014156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	47	488	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175921	112175921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	19	329	0	ENST00000257430.4:c.4630G>T	p.Glu1544Ter	p.E1544*	ENST00000257430	NM_000038.5	1544	Gaa/Taa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0013266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	227	777	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0013266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	27	486	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0013266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			18	25	292	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0013266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			24	17	564	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115258779	115258779	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0013266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	15	438	0	ENST00000369535.4:c.3G>A	p.Met1?	p.M1?	ENST00000369535	NM_002524.4	1	atG/atA						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108141997	108141997	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			41	17	427	0	ENST00000278616.4:c.2941C>A	p.Arg981Ser	p.R981S	ENST00000278616	NM_000051.3	981	Cgt/Agt						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88476408	88476408	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			37	16	395	0	ENST00000360948.2:c.1724A>C	p.Lys575Thr	p.K575T	ENST00000360948	NM_001012338.2	575	aAg/aCg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	400	433	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0010063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	117	366	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0010063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	110	363	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48575090	48575090	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	209	606	0	ENST00000342988.3:c.284A>G	p.Tyr95Cys	p.Y95C	ENST00000342988	NM_005359.5	95	tAt/tGt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	53	693	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578467	7578467	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	29	768	0	ENST00000269305.4:c.463A>C	p.Thr155Pro	p.T155P	ENST00000269305	NM_001126112.2	155	Acc/Ccc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	26	748	0	ENST00000269305.4:c.467G>T	p.Arg156Leu	p.R156L	ENST00000269305	NM_001126112.2	156	cGc/cTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578456	7578467	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGACGCGGGT	GCGGACGCGGGT	CC			P-0014075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	209	499	2	ENST00000269305.4:c.463_474delinsGG	p.Thr155GlyfsTer12	p.T155Gfs*12	ENST00000269305	NM_001126112.2	155	ACCCGCGTCCGC/GG						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116340015	116340015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	54	347	0	ENST00000397752.3:c.877G>A	p.Glu293Lys	p.E293K	ENST00000397752	NM_000245.2	293	Gaa/Aaa						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116411879	116411918	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCTTTCTTTCTCTCTGTTTTAAGATCTGGGCAGTGAATT	CTCTTTCTTTCTCTCTGTTTTAAGATCTGGGCAGTGAATT	-			P-0014075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	75	289	0	ENST00000397752.3:c.2888-24_2903del		p.X963_splice	ENST00000397752	NM_000245.2	963							NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70349892	70349892	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	124	337	0	ENST00000374080.3:c.3875T>A	p.Val1292Glu	p.V1292E	ENST00000374080		1292	gTa/gAa						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64572117	64572117	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	179	536	1	ENST00000337652.1:c.1537C>T	p.Gln513Ter	p.Q513*	ENST00000337652	NM_130803.2	513	Cag/Tag						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8111514	8111515	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0012005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	149	431	0	ENST00000346208.3:c.1002_1003delGG	p.Asp335ProfsTer16	p.D335Pfs*16	ENST00000346208		334	GGg/g						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782144		P-0012784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	154	511	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0013674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	255	743	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0010608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1023	165	575	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1128	111	561	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0014228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	13	393	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0014228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	18	463	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0014309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1389	6764	795	1	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg						NEWRECORD																																																																									
HIST3H3	8290	MSKCC	GRCh37	1	228612675	228612675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	57	860	0	ENST00000366696.1:c.352G>T	p.Val118Phe	p.V118F	ENST00000366696	NM_003493.2	118	Gtc/Ttc						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243727110	243727110	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	432	774	1	ENST00000263826.5:c.860T>A	p.Ile287Asn	p.I287N	ENST00000263826	NM_005465.4	287	aTt/aAt						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89828375	89828375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	364	811	0	ENST00000389301.3:c.2834C>A	p.Ala945Asp	p.A945D	ENST00000389301	NM_000135.2	945	gCt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577138	7577162	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGTCCCAGTAGATTACCACTACTCA	CGTCCCAGTAGATTACCACTACTCA	-			P-0014309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	328	869	0	ENST00000269305.4:c.783-7_800del		p.X261_splice	ENST00000269305	NM_001126112.2	261							NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11144506	11144506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	512	736	1	ENST00000344626.4:c.3838G>T	p.Gly1280Cys	p.G1280C	ENST00000344626	NM_003072.3	1280	Ggc/Tgc						NEWRECORD																																																																									
INPP4A	3631	MSKCC	GRCh37	2	99162531	99162531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	125	406	2	ENST00000074304.5:c.1049G>A	p.Gly350Glu	p.G350E	ENST00000074304	NM_001134224.1	350	gGa/gAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0010749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	47	450	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc						NEWRECORD																																																																									
JUN	3725	MSKCC	GRCh37	1	59247958	59247958	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	58	447	0	ENST00000371222.2:c.785A>G	p.Asn262Ser	p.N262S	ENST00000371222	NM_002228.3	262	aAc/aGc						NEWRECORD																																																																									
HIST1H3D	8351	MSKCC	GRCh37	6	26197342	26197342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1694	103	948	0	ENST00000356476.2:c.137C>T	p.Thr46Met	p.T46M	ENST00000356476		46	aCg/aTg						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29588847	29588847	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	60	458	0	ENST00000358273.4:c.4696A>G	p.Ser1566Gly	p.S1566G	ENST00000358273	NM_001042492.2	1566	Agt/Ggt						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63554540	63554540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	60	348	0	ENST00000307078.5:c.199G>A	p.Gly67Arg	p.G67R	ENST00000307078	NM_004655.3	67	Ggg/Agg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175349	112175356	+	frameshift_variant	Frame_Shift_Del	DEL	AATTTTCT	AATTTTCT	-			P-0010749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	36	238	0	ENST00000257430.4:c.4058_4065del	p.Glu1353ValfsTer19	p.E1353Vfs*19	ENST00000257430	NM_000038.5	1353	gAATTTTCT/g						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0013372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	921	898	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0010988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	95	386	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0010988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	78	502	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	148	482	0	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010804-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	18	473	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0010804-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	23	580	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0014807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	143	597	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63851545	63851545	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	79	565	0	ENST00000279873.7:c.2323C>A	p.His775Asn	p.H775N	ENST00000279873	NM_032199.2	775	Cat/Aat						NEWRECORD																																																																									
IGF1	3479	MSKCC	GRCh37	12	102811648	102811648	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	85	673	0	ENST00000307046.8:c.536G>T	p.Arg179Met	p.R179M	ENST00000307046	NM_001111285.1	179	aGg/aTg						NEWRECORD																																																																									
HIST1H3G	8355	MSKCC	GRCh37	6	26271447	26271447	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	129	318	0	ENST00000305910.3:c.166C>G	p.Gln56Glu	p.Q56E	ENST00000305910	NM_003534.2	56	Cag/Gag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	567	486	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0012849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	337	631	1	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42042709	42042709	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	532	1090	1	ENST00000219905.7:c.6904G>T	p.Glu2302Ter	p.E2302*	ENST00000219905	NM_001164273.1	2302	Gaa/Taa						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8111447	8111447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	156	546	0	ENST00000346208.3:c.933G>T	p.Arg311Ser	p.R311S	ENST00000346208		311	agG/agT						NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36938272	36938272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	226	972	2	ENST00000361632.4:c.689C>A	p.Pro230His	p.P230H	ENST00000361632		230	cCc/cAc						NEWRECORD																																																																									
IRS1	3667	MSKCC	GRCh37	2	227663263	227663263	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	113	522	0	ENST00000305123.5:c.192C>G	p.Ile64Met	p.I64M	ENST00000305123	NM_005544.2	64	atC/atG						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1253931	1253931	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1218	343	821	0	ENST00000310581.5:c.3311G>T	p.Ser1104Ile	p.S1104I	ENST00000310581	NM_198253.2	1104	aGt/aTt						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	459806	459806	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1989	356	919	2	ENST00000399788.2:c.1289A>T	p.Lys430Met	p.K430M	ENST00000399788	NM_001042603.1	430	aAg/aTg						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	41961502	41961502	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1522	305	1178	0	ENST00000219905.7:c.410G>A	p.Trp137Ter	p.W137*	ENST00000219905	NM_001164273.1	137	tGg/tAg						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15297743	15297743	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	210	778	0	ENST00000263388.2:c.1897G>T	p.Val633Phe	p.V633F	ENST00000263388	NM_000435.2	633	Gtc/Ttc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0010840-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			185	86	452	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0010840-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			226	89	628	0	ENST00000329236.7:c.1459+1G>T		p.X487_splice	ENST00000329236	NM_001204466.1	487							NEWRECORD																																																																									
STK40	83931	MSKCC	GRCh37	1	36824424	36824424	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0010840-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			221	102	459	1	ENST00000373129.3:c.113-1G>T		p.X38_splice	ENST00000373129	NM_032017.1	38							NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156843551	156843551	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010840-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			368	93	553	0	ENST00000524377.1:c.977G>C	p.Ser326Thr	p.S326T	ENST00000524377	NM_002529.3	326	aGc/aCc						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25967312	25967312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010840-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			334	110	557	0	ENST00000435504.4:c.1894C>T	p.His632Tyr	p.H632Y	ENST00000435504		632	Cat/Tat						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189455570	189455570	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010840-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			216	95	455	0	ENST00000264731.3:c.104A>T	p.Tyr35Phe	p.Y35F	ENST00000264731	NM_003722.4	35	tAt/tTt						NEWRECORD																																																																									
PHOX2B	8929	MSKCC	GRCh37	4	41748102	41748102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010840-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			37	14	83	1	ENST00000226382.2:c.667G>A	p.Ala223Thr	p.A223T	ENST00000226382	NM_003924.3	223	Gct/Act						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	93967910	93967910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010840-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			177	126	642	1	ENST00000369303.4:c.2017G>A	p.Glu673Lys	p.E673K	ENST00000369303	NM_004440.3	673	Gaa/Aaa						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135778144	135778144	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010840-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			174	120	508	0	ENST00000298552.3:c.2239A>C	p.Ile747Leu	p.I747L	ENST00000298552	NM_001162426.1	747	Atc/Ctc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1218483	1218483	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010840-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			124	173	393	1	ENST00000326873.7:c.358G>T	p.Glu120Ter	p.E120*	ENST00000326873	NM_000455.4	120	Gaa/Taa						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610139	10610139	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010840-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			113	207	561	0	ENST00000171111.5:c.571G>C	p.Ala191Pro	p.A191P	ENST00000171111	NM_203500.1	191	Gct/Cct						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42052725	42052725	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0012048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	52	511	0	ENST00000219905.7:c.7396C>T	p.Arg2466Ter	p.R2466*	ENST00000219905	NM_001164273.1	2466	Cga/Tga						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857968	9857968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	242	437	0	ENST00000330684.3:c.3433G>A	p.Val1145Met	p.V1145M	ENST00000330684	NM_001134407.1	1145	Gtg/Atg						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15303012	15303012	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	29	232	0	ENST00000263388.2:c.438C>G	p.Cys146Trp	p.C146W	ENST00000263388	NM_000435.2	146	tgC/tgG						NEWRECORD																																																																									
FGFR4	2264	MSKCC	GRCh37	5	176523672	176523672	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	183	734	0	ENST00000292408.4:c.2083G>T	p.Val695Leu	p.V695L	ENST00000292408	NM_213647.1	695	Gtg/Ttg						NEWRECORD																																																																									
JAK2	3717	MSKCC	GRCh37	9	5054563	5054563	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0010855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	39	143	0	ENST00000381652.3:c.615C>G	p.Ser205Arg	p.S205R	ENST00000381652	NM_004972.3	205	agC/agG						NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101911534	101911534	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111426349		P-0010855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	214	472	2	ENST00000374994.4:c.1459C>T	p.Arg487Trp	p.R487W	ENST00000374994	NM_004612.2	487	Cgg/Tgg						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32438063	32438063	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	151	456	0	ENST00000332351.3:c.974C>A	p.Ser325Ter	p.S325*	ENST00000332351	NM_024426.4	325	tCa/tAa						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57863434	57863434	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147931475		P-0010855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	392	643	0	ENST00000228682.2:c.1529G>A	p.Arg510Gln	p.R510Q	ENST00000228682	NM_005269.2	510	cGg/cAg						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95562242	95562242	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	157	514	0	ENST00000343455.3:c.5015A>G	p.Lys1672Arg	p.K1672R	ENST00000343455	NM_177438.2	1672	aAa/aGa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577563	7577563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	114	450	0	ENST00000269305.4:c.718A>G	p.Ser240Gly	p.S240G	ENST00000269305	NM_001126112.2	240	Agt/Ggt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0011239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	28	484	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0013108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	119	525	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	42	449	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	40	624	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108175493	108175493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	70	577	0	ENST00000278616.4:c.5588C>T	p.Ser1863Phe	p.S1863F	ENST00000278616	NM_000051.3	1863	tCt/tTt						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37665992	37665992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	123	316	0	ENST00000447079.4:c.2644C>T	p.Arg882Trp	p.R882W	ENST00000447079	NM_015083.1	882	Cgg/Tgg						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061218	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCCGTTCTCGAACATGTT	GCCGTTCTCGAACATGTT	-			P-0014892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	114	482	0	ENST00000250448.2:c.754_771del	p.Asn252_Gly257del	p.N252_G257del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGC/-						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118375868	118375868	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	128	404	0	ENST00000534358.1:c.9261C>A	p.Asn3087Lys	p.N3087K	ENST00000534358	NM_005933.3	3087	aaC/aaA						NEWRECORD																																																																									
CDK12	51755	MSKCC	GRCh37	17	37627916	37627944	+	frameshift_variant	Frame_Shift_Del	DEL	ACTCAAGTATCTGTAACAGCTGCTATTCC	ACTCAAGTATCTGTAACAGCTGCTATTCC	-			P-0014892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	143	466	0	ENST00000447079.4:c.1833_1861del	p.Gln612ProfsTer19	p.Q612Pfs*19	ENST00000447079	NM_015083.1	611	ACTCAAGTATCTGTAACAGCTGCTATTCCa/a						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0012741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1341	166	942	3	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	124	627	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0013496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	138	723	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150001091	150001091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	94	717	2	ENST00000253339.5:c.2513G>A	p.Arg838His	p.R838H	ENST00000253339		838	cGt/cAt						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44833925	44833925	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	148	429	0	ENST00000377967.4:c.349C>T	p.Gln117Ter	p.Q117*	ENST00000377967	NM_021140.2	117	Cag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008167-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			287	549	592	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0008167-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			155	383	819	0	ENST00000269305.4:c.672G>C	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaC						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32915049	32915049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008167-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			407	411	1245	1	ENST00000380152.3:c.6557C>T	p.Ser2186Leu	p.S2186L	ENST00000380152		2186	tCa/tTa						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95570078	95570078	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008167-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			137	288	692	0	ENST00000343455.3:c.3655A>G	p.Ile1219Val	p.I1219V	ENST00000343455	NM_177438.2	1219	Att/Gtt						NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91292850	91292850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008167-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			393	110	561	2	ENST00000355112.3:c.352G>A	p.Val118Ile	p.V118I	ENST00000355112	NM_000057.2	118	Gtt/Att						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10264971	10264971	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0008167-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			251	134	494	0	ENST00000340748.4:c.1969G>T	p.Glu657Ter	p.E657*	ENST00000340748		657	Gag/Tag						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610247	10610247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	229	713	1	ENST00000171111.5:c.463G>T	p.Val155Phe	p.V155F	ENST00000171111	NM_203500.1	155	Gtc/Ttc						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	21	592	1	ENST00000269571.5:c.2329G>A	p.Val777Met	p.V777M	ENST00000269571		777	Gtg/Atg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519997		P-0014786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	217	608	0	ENST00000269305.4:c.332T>G	p.Leu111Arg	p.L111R	ENST00000269305	NM_001126112.2	111	cTg/cGg						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48954379	48954379	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0014786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	243	291	0	ENST00000267163.4:c.1498+2T>C		p.X500_splice	ENST00000267163	NM_000321.2	500							NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106016	27106016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	60	418	0	ENST00000324856.7:c.5627C>T	p.Pro1876Leu	p.P1876L	ENST00000324856	NM_006015.4	1876	cCa/cTa						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48954301	48954301	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0014786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	76	287	0	ENST00000267163.4:c.1422C>G	p.Ser474Arg	p.S474R	ENST00000267163	NM_000321.2	474	agC/agG						NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56863014	56863014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	110	369	0	ENST00000308159.5:c.920G>T	p.Gly307Val	p.G307V	ENST00000308159	NM_014669.4	307	gGa/gTa						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52678735	52678735	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	217	478	0	ENST00000394830.3:c.884C>G	p.Ser295Ter	p.S295*	ENST00000394830	NM_018313.4	295	tCa/tGa						NEWRECORD																																																																									
TAP1	6890	MSKCC	GRCh37	6	32818182	32818182	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	223	557	1	ENST00000354258.4:c.1343A>T	p.Gln448Leu	p.Q448L	ENST00000354258	NM_000593.5	448	cAg/cTg						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106545728	106545728	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	444	494	0	ENST00000359195.3:c.3205C>G	p.Leu1069Val	p.L1069V	ENST00000359195	NM_002649.2	1069	Ctt/Gtt						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139396758	139396758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	172	541	1	ENST00000277541.6:c.5350C>T	p.Arg1784Trp	p.R1784W	ENST00000277541	NM_017617.3	1784	Cgg/Tgg						NEWRECORD																																																																									
ZRSR2	8233	MSKCC	GRCh37	X	15809066	15809066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	113	437	0	ENST00000307771.7:c.51G>T	p.Lys17Asn	p.K17N	ENST00000307771	NM_005089.3	17	aaG/aaT						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76937863	76937863	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	161	487	0	ENST00000373344.5:c.2885C>G	p.Ser962Cys	p.S962C	ENST00000373344	NM_000489.3	962	tCt/tGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0014990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	220	494	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0014990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	114	382	1	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	253	569	0	ENST00000326873.7:c.709G>T	p.Asp237Tyr	p.D237Y	ENST00000326873	NM_000455.4	237	Gac/Tac						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108203543	108203543	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	89	363	0	ENST00000278616.4:c.7843C>T	p.Gln2615Ter	p.Q2615*	ENST00000278616	NM_000051.3	2615	Cag/Tag						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95570059	95570059	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs146584765		P-0014990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	90	473	0	ENST00000343455.3:c.3674A>G	p.Tyr1225Cys	p.Y1225C	ENST00000343455	NM_177438.2	1225	tAc/tGc						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2226386	2226386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	240	644	0	ENST00000398665.3:c.3866C>A	p.Ala1289Asp	p.A1289D	ENST00000398665	NM_032482.2	1289	gCc/gAc						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157222662	157222662	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0014990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	74	406	0	ENST00000346085.5:c.1926+3G>A		p.X642_splice	ENST00000346085	NM_020732.3	642							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	35	287	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
CBFB	865	MSKCC	GRCh37	16	67100663	67100663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	108	774	1	ENST00000412916.2:c.361G>A	p.Gly121Ser	p.G121S	ENST00000412916		121	Ggt/Agt						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8111452	8111452	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	86	606	0	ENST00000346208.3:c.938del	p.Ala313GlufsTer42	p.A313Efs*42	ENST00000346208		313	gCa/ga						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8111547	8111565	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TACAAGCTTCACAATGTAA	TACAAGCTTCACAATGTAA	-			P-0014121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1233	356	553	0	ENST00000346208.3:c.1033_1047+4del		p.X345_splice	ENST00000346208		345							NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0012341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	76	365	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs17849781		P-0012341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	150	634	3	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023954	27023954	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	27	59	0	ENST00000324856.7:c.1060C>T	p.Gln354Ter	p.Q354*	ENST00000324856	NM_006015.4	354	Caa/Taa						NEWRECORD																																																																									
PMS2	5395	MSKCC	GRCh37	7	6026649	6026649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	52	541	0	ENST00000265849.7:c.1747G>A	p.Glu583Lys	p.E583K	ENST00000265849	NM_000535.5	583	Gaa/Aaa						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56486568	56486568	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	99	586	0	ENST00000267101.3:c.1147A>C	p.Lys383Gln	p.K383Q	ENST00000267101	NM_001982.3	383	Aag/Cag						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10246414	10246414	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0012341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	54	457	0	ENST00000340748.4:c.4723C>T	p.Gln1575Ter	p.Q1575*	ENST00000340748		1575	Cag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	210	346	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0013704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	132	364	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175600	112175600	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	217	471	0	ENST00000257430.4:c.4312delA	p.Thr1438HisfsTer35	p.T1438Hfs*35	ENST00000257430	NM_000038.5	1437	Aaa/aa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0013704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	119	322	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55211097	55211097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	158	446	1	ENST00000275493.2:c.340G>A	p.Glu114Lys	p.E114K	ENST00000275493	NM_005228.3	114	Gaa/Aaa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0013704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	151	430	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89350069	89350069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	388	833	2	ENST00000301030.4:c.2881C>T	p.Arg961Cys	p.R961C	ENST00000301030	NM_001256183.1	961	Cgc/Tgc						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18544155	18544155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	196	424	0	ENST00000266497.5:c.1972G>T	p.Ala658Ser	p.A658S	ENST00000266497		658	Gcc/Tcc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578210	7578211	+	missense_variant	Missense_Mutation	DNP	TC	TC	CT			P-0013704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	540	306	295	ENST00000269305.4:c.638_639delinsAG	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGA/cAG						NEWRECORD																																																																									
CALR	811	MSKCC	GRCh37	19	13054719	13054719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	195	603	2	ENST00000316448.5:c.1246G>A	p.Glu416Lys	p.E416K	ENST00000316448	NM_004343.3	416	Gag/Aag						NEWRECORD																																																																									
NCOA3	8202	MSKCC	GRCh37	20	46281288	46281288	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	521	629	1	ENST00000371998.3:c.4085T>A	p.Met1362Lys	p.M1362K	ENST00000371998		1362	aTg/aAg						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	93956675	93956675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	285	703	0	ENST00000369303.4:c.2561G>A	p.Arg854His	p.R854H	ENST00000369303	NM_004440.3	854	cGt/cAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0012708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	71	429	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153268156	153268156	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	59	497	2	ENST00000281708.4:c.652C>T	p.Gln218Ter	p.Q218*	ENST00000281708	NM_033632.3	218	Caa/Taa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112155043	112155043	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0012708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	137	416	0	ENST00000257430.4:c.1312+2T>C		p.X438_splice	ENST00000257430	NM_000038.5	438							NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2134608	2134608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	49	489	0	ENST00000219476.3:c.4385C>T	p.Thr1462Ile	p.T1462I	ENST00000219476	NM_000548.3	1462	aCc/aTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574002	7574002	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	127	648	0	ENST00000269305.4:c.1025delG	p.Arg342GlnfsTer3	p.R342Qfs*3	ENST00000269305	NM_001126112.2	342	cGa/ca						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16199495	16199495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	125	691	0	ENST00000375759.3:c.268G>A	p.Gly90Arg	p.G90R	ENST00000375759	NM_015001.2	90	Gga/Aga						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106662	27106662	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	140	598	0	ENST00000324856.7:c.6273G>A	p.Trp2091Ter	p.W2091*	ENST00000324856	NM_006015.4	2091	tgG/tgA						NEWRECORD																																																																									
TCF3	6929	MSKCC	GRCh37	19	1619829	1619829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	201	1128	1	ENST00000344749.5:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000344749	NM_001136139.2	373	Gga/Aga						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15291902	15291902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	186	674	0	ENST00000263388.2:c.2864C>T	p.Thr955Ile	p.T955I	ENST00000263388	NM_000435.2	955	aCa/aTa						NEWRECORD																																																																									
EIF1AX	1964	MSKCC	GRCh37	X	20159752	20159752	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	245	619	0	ENST00000379607.5:c.7A>G	p.Lys3Glu	p.K3E	ENST00000379607	NM_001412.3	3	Aag/Gag						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108122714	108122714	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	332	512	0	ENST00000278616.4:c.1760del	p.Gly587ValfsTer3	p.G587Vfs*3	ENST00000278616	NM_000051.3	586	gaG/ga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0011370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	434	422	1	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0014905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	28	466	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag						NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056201	26056201	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	145	407	0	ENST00000343677.2:c.456G>C	p.Lys152Asn	p.K152N	ENST00000343677	NM_005319.3	152	aaG/aaC						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56482439	56482449	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTGGGTAGG	AGGTGGGTAGG	-			P-0014905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	46	594	0	ENST00000267101.3:c.988+1_988+11del		p.X330_splice	ENST00000267101	NM_001982.3	330							NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56494849	56494849	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	50	424	0	ENST00000267101.3:c.3206C>A	p.Ser1069Tyr	p.S1069Y	ENST00000267101	NM_001982.3	1069	tCt/tAt						NEWRECORD																																																																									
SOS1	6654	MSKCC	GRCh37	2	39294789	39294789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	93	429	0	ENST00000402219.2:c.193C>G	p.Arg65Gly	p.R65G	ENST00000402219	NM_005633.3	65	Cga/Gga						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47041202	47041202	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	122	976	0	ENST00000329236.7:c.1396C>G	p.His466Asp	p.H466D	ENST00000329236	NM_001204466.1	466	Cat/Gat						NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913500		P-0011310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	133	319	0	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0010953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	97	340	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag						NEWRECORD																																																																									
PRDM1	639	MSKCC	GRCh37	6	106555083	106555083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	38	245	0	ENST00000369096.4:c.2200G>A	p.Asp734Asn	p.D734N	ENST00000369096	NM_001198.3	734	Gac/Aac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	258	456	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11138521	11138521	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	386	497	0	ENST00000344626.4:c.3277C>T	p.Arg1093Ter	p.R1093*	ENST00000344626	NM_003072.3	1093	Cga/Tga						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1218489	1218489	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0014513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	263	424	0	ENST00000326873.7:c.364A>T	p.Lys122Ter	p.K122*	ENST00000326873	NM_000455.4	122	Aag/Tag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	23	567	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577126	7577126	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	36	675	0	ENST00000269305.4:c.812A>T	p.Glu271Val	p.E271V	ENST00000269305	NM_001126112.2	271	gAg/gTg						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128829040	128829042	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0012733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	12	97	1	ENST00000249373.3:c.67_69delCTG	p.Leu23del	p.L23del	ENST00000249373	NM_005631.4	16	ggGCTg/ggg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	217	521	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0013461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	132	831	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55141026	55141026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	85	642	0	ENST00000257290.5:c.1672C>T	p.Arg558Cys	p.R558C	ENST00000257290	NM_006206.4	558	Cgc/Tgc						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143003202	143003202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	119	622	1	ENST00000262992.4:c.2624C>T	p.Ala875Val	p.A875V	ENST00000262992	NM_001101669.1	875	gCg/gTg						NEWRECORD																																																																									
DNMT1	1786	MSKCC	GRCh37	19	10284548	10284548	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0013461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	120	712	2	ENST00000340748.4:c.634C>T	p.Arg212Ter	p.R212*	ENST00000340748		212	Cga/Tga						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0014369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	75	279	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0014369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	91	483	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa						NEWRECORD																																																																									
TNFRSF14	8764	MSKCC	GRCh37	1	2493212	2493212	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	97	562	0	ENST00000355716.4:c.652A>G	p.Thr218Ala	p.T218A	ENST00000355716	NM_003820.2	218	Aca/Gca						NEWRECORD																																																																									
CDKN1B	1027	MSKCC	GRCh37	12	12871875	12871875	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	85	179	0	ENST00000228872.4:c.592A>G	p.Thr198Ala	p.T198A	ENST00000228872	NM_004064.3	198	Acg/Gcg						NEWRECORD																																																																									
MLL4	9757	MSKCC	GRCh37	19	36212420	36212420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	210	637	0	ENST00000222270.7:c.2171C>T	p.Ala724Val	p.A724V	ENST00000222270	NM_014727.1	724	gCt/gTt						NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57485049	57485049	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	77	307	0	ENST00000371085.3:c.883G>C	p.Asp295His	p.D295H	ENST00000371085	NM_000516.4	295	Gat/Cat						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152415471	152415673	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTCATCCTCTTTGAGCTTCTCTCTCTCACTCTCTCTCTGCGCATTCAGGAGTGTACACATTTCTGTCCAGCACCCTGAAGTCTCTGGAAGAGAAGGACCATATCCACCGAGTCCTGGACAAGATCACAGACACTTTGATCCACCTGATGGCCAAGGCAGGCCTGACCCTGCAGCAGCAGCACCAGCGGCTGGCCCAGCTCCT	CCTCATCCTCTTTGAGCTTCTCTCTCTCACTCTCTCTCTGCGCATTCAGGAGTGTACACATTTCTGTCCAGCACCCTGAAGTCTCTGGAAGAGAAGGACCATATCCACCGAGTCCTGGACAAGATCACAGACACTTTGATCCACCTGATGGCCAAGGCAGGCCTGACCCTGCAGCAGCAGCACCAGCGGCTGGCCCAGCTCCT	-			P-0014369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	52	158	0	ENST00000206249.3:c.1370-38_1534del		p.X457_splice	ENST00000206249	NM_000125.3	457							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0015054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	111	670	2	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0012384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	203	655	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175770	112175773	+	frameshift_variant	Frame_Shift_Del	DEL	GGAA	GGAA	-			P-0012384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	80	336	1	ENST00000257430.4:c.4479_4482del	p.Glu1494ValfsTer12	p.E1494Vfs*12	ENST00000257430	NM_000038.5	1493	acGGAA/ac						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173531	112173531	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0012384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	92	517	3	ENST00000257430.4:c.2240C>G	p.Ser747Ter	p.S747*	ENST00000257430	NM_000038.5	747	tCa/tGa						NEWRECORD																																																																									
STAT3	6774	MSKCC	GRCh37	17	40497609	40497609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1603	138	955	3	ENST00000264657.5:c.340C>T	p.Arg114Cys	p.R114C	ENST00000264657	NM_139276.2	114	Cgc/Tgc						NEWRECORD																																																																									
CASP8	841	MSKCC	GRCh37	2	202141601	202141603	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0012384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	174	557	0	ENST00000358485.4:c.893_895del	p.Ile298del	p.I298del	ENST00000358485	NM_001080125.1	297	ATC/-						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	40	579	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
SH2D1A	4068	MSKCC	GRCh37	X	123504136	123504136	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	80	507	0	ENST00000371139.4:c.312G>T	p.Lys104Asn	p.K104N	ENST00000371139	NM_001114937.2	104	aaG/aaT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0011017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	364	472	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt						NEWRECORD																																																																									
GPS2	2874	MSKCC	GRCh37	17	7217872	7217875	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	-			P-0011017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1124	332	592	2	ENST00000380728.2:c.136_139delGAAG	p.Glu46AsnfsTer16	p.E46Nfs*16	ENST00000380728		46	GAAGaa/aa						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55592150	55592150	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	155	398	0	ENST00000288135.5:c.1474A>G	p.Lys492Glu	p.K492E	ENST00000288135	NM_000222.2	492	Aag/Gag						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610330	10610330	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	277	391	0	ENST00000171111.5:c.380G>C	p.Gly127Ala	p.G127A	ENST00000171111	NM_203500.1	127	gGt/gCt						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	841	456	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115700	8115714	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGATTAACAGACCCC	AGATTAACAGACCCC	-			P-0011415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	440	492	0	ENST00000346208.3:c.1048-2_1060del		p.X350_splice	ENST00000346208		350							NEWRECORD																																																																									
PRKAR1A	5573	MSKCC	GRCh37	17	66511578	66511578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	43	227	1	ENST00000358598.2:c.38G>A	p.Arg13His	p.R13H	ENST00000358598	NM_212471.2	13	cGc/cAc						NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65339111	65339111	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	87	484	1	ENST00000342505.4:c.425delA	p.Lys142ArgfsTer26	p.K142Rfs*26	ENST00000342505	NM_002227.2	142	aAg/ag						NEWRECORD																																																																									
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	35	218	0	ENST00000303115.3:c.361delA	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	119	487	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66931247	66931247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	99	478	2	ENST00000374690.3:c.1889G>A	p.Arg630Gln	p.R630Q	ENST00000374690	NM_000044.3	630	cGg/cAg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692791	89692791	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	38	246	0	ENST00000371953.3:c.275A>G	p.Asp92Gly	p.D92G	ENST00000371953	NM_000314.4	92	gAc/gGc						NEWRECORD																																																																									
PMS2	5395	MSKCC	GRCh37	7	6036958	6036958	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	45	461	0	ENST00000265849.7:c.802del	p.Tyr268ThrfsTer39	p.Y268Tfs*39	ENST00000265849	NM_000535.5	268	Tac/ac						NEWRECORD																																																																									
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	65	1202	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151874013	151874013	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	61	494	1	ENST00000262189.6:c.8525delA	p.Asn2842MetfsTer21	p.N2842Mfs*21	ENST00000262189	NM_170606.2	2842	aAt/at						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	145	1466	5	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16255338	16255338	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200134542		P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	76	525	0	ENST00000375759.3:c.2603C>T	p.Ala868Val	p.A868V	ENST00000375759	NM_015001.2	868	gCg/gTg						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42795378	42795378	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	37	525	0	ENST00000575354.2:c.2462del	p.Gly821GlufsTer103	p.G821Efs*103	ENST00000575354	NM_015125.3	820	Ggg/gg						NEWRECORD																																																																									
NF2	4771	MSKCC	GRCh37	22	30067836	30067836	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	40	309	0	ENST00000338641.4:c.1021C>T	p.Arg341Ter	p.R341*	ENST00000338641	NM_000268.3	341	Cga/Tga						NEWRECORD																																																																									
ERG	2078	MSKCC	GRCh37	21	39755427	39755427	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	32	704	1	ENST00000288319.7:c.1338delT	p.Phe446LeufsTer59	p.F446Lfs*59	ENST00000288319	NM_182918.3	446	ttT/tt						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16262669	16262669	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138432235		P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	27	354	0	ENST00000375759.3:c.9934C>T	p.Arg3312Cys	p.R3312C	ENST00000375759	NM_015001.2	3312	Cgc/Tgc						NEWRECORD																																																																									
ACVR1	90	MSKCC	GRCh37	2	158622516	158622516	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs387906589		P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	127	1252	2	ENST00000263640.3:c.983G>T	p.Gly328Val	p.G328V	ENST00000263640	NM_001105.4	328	gGg/gTg						NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178095828	178095828	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	63	359	0	ENST00000397062.3:c.1503A>G	p.Ile501Met	p.I501M	ENST00000397062	NM_006164.4	501	atA/atG						NEWRECORD																																																																									
PMS1	5378	MSKCC	GRCh37	2	190717481	190717481	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	30	241	0	ENST00000441310.2:c.800T>C	p.Val267Ala	p.V267A	ENST00000441310	NM_000534.4	267	gTa/gCa						NEWRECORD																																																																									
MLH1	4292	MSKCC	GRCh37	3	37081683	37081683	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs63751630		P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	54	431	0	ENST00000231790.2:c.1565G>A	p.Arg522Gln	p.R522Q	ENST00000231790	NM_000249.3	522	cGg/cAg						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52668729	52668729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	64	543	0	ENST00000394830.3:c.1190G>A	p.Arg397Gln	p.R397Q	ENST00000394830	NM_018313.4	397	cGg/cAg						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52696184	52696184	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	90	762	0	ENST00000394830.3:c.493G>T	p.Asp165Tyr	p.D165Y	ENST00000394830	NM_018313.4	165	Gat/Tat						NEWRECORD																																																																									
FOXP1	27086	MSKCC	GRCh37	3	71247496	71247496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	77	526	0	ENST00000318789.4:c.37G>A	p.Gly13Ser	p.G13S	ENST00000318789	NM_032682.5	13	Ggt/Agt						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131940624	131940624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	45	378	2	ENST00000265335.6:c.2651G>A	p.Arg884His	p.R884H	ENST00000265335		884	cGt/cAt						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157510904	157510904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	73	460	1	ENST00000346085.5:c.3679C>T	p.Gln1227Ter	p.Q1227*	ENST00000346085	NM_020732.3	1227	Caa/Taa						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508470	106508470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	10	145	0	ENST00000359195.3:c.464C>T	p.Thr155Met	p.T155M	ENST00000359195	NM_002649.2	155	aCg/aTg						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116435769	116435769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	63	632	0	ENST00000397752.3:c.3859G>A	p.Val1287Ile	p.V1287I	ENST00000397752	NM_000245.2	1287	Gta/Ata						NEWRECORD																																																																									
SYK	6850	MSKCC	GRCh37	9	93606436	93606436	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201455170		P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	50	615	0	ENST00000375746.1:c.256G>A	p.Ala86Thr	p.A86T	ENST00000375746	NM_001174167.1	86	Gcc/Acc						NEWRECORD																																																																									
PPP6C	5537	MSKCC	GRCh37	9	127915951	127915951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	101	1183	1	ENST00000373547.4:c.530G>A	p.Arg177Gln	p.R177Q	ENST00000373547	NM_002721.4	177	cGa/cAa						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133750290	133750290	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	44	617	2	ENST00000318560.5:c.1121A>G	p.Asn374Ser	p.N374S	ENST00000318560	NM_005157.4	374	aAc/aGc						NEWRECORD																																																																									
SUFU	51684	MSKCC	GRCh37	10	104359294	104359294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	38	562	1	ENST00000369902.3:c.1015C>T	p.Arg339Trp	p.R339W	ENST00000369902	NM_016169.3	339	Cgg/Tgg						NEWRECORD																																																																									
RPS6KA4	8986	MSKCC	GRCh37	11	64138137	64138137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	49	623	3	ENST00000334205.4:c.2060C>T	p.Thr687Met	p.T687M	ENST00000334205	NM_003942.2	687	aCg/aTg						NEWRECORD																																																																									
SMARCD1	6602	MSKCC	GRCh37	12	50482302	50482302	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	22	307	0	ENST00000394963.4:c.655-2A>G		p.X219_splice	ENST00000394963	NM_003076.4	219							NEWRECORD																																																																									
MAPK3	5595	MSKCC	GRCh37	16	30129462	30129462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	74	1281	2	ENST00000263025.4:c.566G>A	p.Arg189Gln	p.R189Q	ENST00000263025	NM_002746.2	189	cGg/cAg						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67662277	67662277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	38	482	0	ENST00000264010.4:c.1523G>T	p.Arg508Met	p.R508M	ENST00000264010	NM_006565.3	508	aGg/aTg						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89348136	89348136	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	61	1957	0	ENST00000301030.4:c.4814T>C	p.Met1605Thr	p.M1605T	ENST00000301030	NM_001256183.1	1605	aTg/aCg						NEWRECORD																																																																									
ALOX12B	242	MSKCC	GRCh37	17	7982785	7982785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	54	1056	0	ENST00000319144.4:c.1000C>T	p.Gln334Ter	p.Q334*	ENST00000319144	NM_001139.2	334	Cag/Tag						NEWRECORD																																																																									
STAT5A	6776	MSKCC	GRCh37	17	40462667	40462667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	58	1491	0	ENST00000345506.4:c.2365G>A	p.Ala789Thr	p.A789T	ENST00000345506	NM_003152.3	789	Gcc/Acc						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45422904	45422904	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	76	545	0	ENST00000262160.6:c.224T>C	p.Val75Ala	p.V75A	ENST00000262160	NM_005901.5	75	gTt/gCt						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15271853	15271853	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	34	375	0	ENST00000263388.2:c.6586C>A	p.Leu2196Ile	p.L2196I	ENST00000263388	NM_000435.2	2196	Ctc/Atc						NEWRECORD																																																																									
CHEK2	11200	MSKCC	GRCh37	22	29130576	29130576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	44	670	0	ENST00000328354.6:c.134C>T	p.Thr45Met	p.T45M	ENST00000328354	NM_007194.3	45	aCg/aTg						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133759781	133759783	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	14	301	0	ENST00000318560.5:c.2111_2113del	p.Glu704del	p.E704del	ENST00000318560	NM_005157.4	702	GAG/-						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27088770	27088770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	87	589	0	ENST00000324856.7:c.2382del	p.Ser795AlafsTer38	p.S795Afs*38	ENST00000324856	NM_006015.4	793	atG/at						NEWRECORD																																																																									
PMS1	5378	MSKCC	GRCh37	2	190682810	190682810	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	31	184	0	ENST00000441310.2:c.492delA	p.Lys164AsnfsTer6	p.K164Nfs*6	ENST00000441310	NM_000534.4	162	gcA/gc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27105715	27105717	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	29	445	0	ENST00000324856.7:c.5334_5336del	p.Glu1780del	p.E1780del	ENST00000324856	NM_006015.4	1776	GAA/-						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	191	374	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	128	358	0	ENST00000335508.6:c.1873C>G	p.Arg625Gly	p.R625G	ENST00000335508	NM_012433.2	625	Cgt/Ggt						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8100403	8100403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	267	597	1	ENST00000346208.3:c.377C>A	p.Ser126Tyr	p.S126Y	ENST00000346208		126	tCc/tAc						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118344603	118344604	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0012975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	301	702	0	ENST00000534358.1:c.2730_2731del	p.Arg910SerfsTer9	p.R910Sfs*9	ENST00000534358	NM_005933.3	910	aGG/a						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0011291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	40	451	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0011182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	414	563	1	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc						NEWRECORD																																																																									
PIK3CD	5293	MSKCC	GRCh37	1	9782097	9782097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1110	177	631	0	ENST00000377346.4:c.2120C>T	p.Pro707Leu	p.P707L	ENST00000377346	NM_005026.3	707	cCc/cTc						NEWRECORD																																																																									
ACVR1	90	MSKCC	GRCh37	2	158634716	158634716	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1144	571	881	0	ENST00000263640.3:c.470T>A	p.Leu157His	p.L157H	ENST00000263640	NM_001105.4	157	cTc/cAc						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66356247	66356247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	71	472	1	ENST00000273854.3:c.1250G>A	p.Arg417Gln	p.R417Q	ENST00000273854	NM_004439.5	417	cGg/cAg						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110436057	110436057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	260	386	0	ENST00000375856.3:c.2344G>A	p.Asp782Asn	p.D782N	ENST00000375856	NM_003749.2	782	Gac/Aac						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48573628	48574039	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGTTACCATACAGAGAACATTGGATGGGAGGCTTCAGGTTAGTCTTATAAGAGTTTTTCTATACCCTCTATGGTGGCAGATTTAAAAACTTGCTACGTTTCCTTTCAAGCTACTACAGGGTAATTTAATTTGTGCTCCATCTCTTCAGATACTGTGCATCCTGTACAAATATGCATTATGGGAATTTCTGGAAGAATATGCAAAAGATAAAATCTTAAAGTTTTTTAATGTTCTACTCAGAAAAATGTTCAATGGAGAAAATTTGGAAAATAAAAATAAAAAGCAGAAAACCCACACTTCGCAAGAACTACCTTTAGCACTTTGGTATTCATTTTTGTAGCCTGTTGTTTTCTTTTTTTTTTTTTTCCTAGACGGAGTCTTGCTCTGTCACCCAGGCTGGAGTACAGTGGC	GTGTTACCATACAGAGAACATTGGATGGGAGGCTTCAGGTTAGTCTTATAAGAGTTTTTCTATACCCTCTATGGTGGCAGATTTAAAAACTTGCTACGTTTCCTTTCAAGCTACTACAGGGTAATTTAATTTGTGCTCCATCTCTTCAGATACTGTGCATCCTGTACAAATATGCATTATGGGAATTTCTGGAAGAATATGCAAAAGATAAAATCTTAAAGTTTTTTAATGTTCTACTCAGAAAAATGTTCAATGGAGAAAATTTGGAAAATAAAAATAAAAAGCAGAAAACCCACACTTCGCAAGAACTACCTTTAGCACTTTGGTATTCATTTTTGTAGCCTGTTGTTTTCTTTTTTTTTTTTTTCCTAGACGGAGTCTTGCTCTGTCACCCAGGCTGGAGTACAGTGGC	-			P-0011182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	84	275	0	ENST00000342988.3:c.215_249+377del		p.X72_splice	ENST00000342988	NM_005359.5	72							NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174929	112174929	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	220	351	0	ENST00000257430.4:c.3638del	p.Ser1213Ter	p.S1213*	ENST00000257430	NM_000038.5	1213	tCa/ta						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175596	112175596	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	351	523	0	ENST00000257430.4:c.4306del	p.Ser1436ValfsTer37	p.S1436Vfs*37	ENST00000257430	NM_000038.5	1435	agA/ag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0013719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	274	459	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	203	528	1	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89350198	89350198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1982	129	1213	1	ENST00000301030.4:c.2752G>A	p.Glu918Lys	p.E918K	ENST00000301030	NM_001256183.1	918	Gag/Aag						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9984844	9984844	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0013719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	61	562	0	ENST00000330684.3:c.1121A>T	p.Lys374Met	p.K374M	ENST00000330684	NM_001134407.1	374	aAg/aTg						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23641544	23641544	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1376	74	679	0	ENST00000261584.4:c.1931G>C	p.Gly644Ala	p.G644A	ENST00000261584	NM_024675.3	644	gGa/gCa						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56440688	56440688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1242	85	760	0	ENST00000407977.2:c.530A>G	p.Tyr177Cys	p.Y177C	ENST00000407977		177	tAc/tGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0012206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	223	555	1	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag						NEWRECORD																																																																									
RHOA	387	MSKCC	GRCh37	3	49412950	49412950	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1201	191	1038	0	ENST00000418115.1:c.73T>G	p.Phe25Val	p.F25V	ENST00000418115	NM_001664.2	25	Ttc/Gtc						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151836278	151836278	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	248	366	0	ENST00000262189.6:c.14527C>A	p.Pro4843Thr	p.P4843T	ENST00000262189	NM_170606.2	4843	Ccc/Acc						NEWRECORD																																																																									
TCF3	6929	MSKCC	GRCh37	19	1611809	1611809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1409	166	1093	1	ENST00000344749.5:c.1853G>A	p.Arg618Gln	p.R618Q	ENST00000344749	NM_001136139.2	618	cGa/cAa						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5212023	5212023	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	119	623	0	ENST00000357368.4:c.5008C>G	p.Gln1670Glu	p.Q1670E	ENST00000357368	NM_002850.3	1670	Cag/Gag						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44515577	44515577	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1141	67	868	0	ENST00000291552.4:c.319G>C	p.Asp107His	p.D107H	ENST00000291552	NM_006758.2	107	Gac/Cac						NEWRECORD																																																																									
GATA1	2623	MSKCC	GRCh37	X	48650400	48650400	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1279	267	978	0	ENST00000376670.3:c.370C>A	p.Leu124Met	p.L124M	ENST00000376670	NM_002049.3	124	Ctg/Atg						NEWRECORD																																																																									
KDM5C	8242	MSKCC	GRCh37	X	53224411	53224411	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0012206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1249	140	821	0	ENST00000375401.3:c.3300+2T>C		p.X1100_splice	ENST00000375401	NM_004187.3	1100							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	281	543	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66766450	66766450	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	90	265	0	ENST00000374690.3:c.1462C>T	p.Gln488Ter	p.Q488*	ENST00000374690	NM_000044.3	488	Cag/Tag						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117683892	117683892	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	130	601	0	ENST00000368508.3:c.3255C>G	p.Phe1085Leu	p.F1085L	ENST00000368508	NM_002944.2	1085	ttC/ttG						NEWRECORD																																																																									
YAP1	10413	MSKCC	GRCh37	11	102098222	102098222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	134	511	0	ENST00000282441.5:c.1186G>A	p.Glu396Lys	p.E396K	ENST00000282441	NM_001130145.2	396	Gag/Aag						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720741	89720741	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			46	41	130	0	ENST00000371953.3:c.892C>T	p.Gln298Ter	p.Q298*	ENST00000371953	NM_000314.4	298	Caa/Taa						NEWRECORD																																																																									
IRS1	3667	MSKCC	GRCh37	2	227659982	227659982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	149	567	0	ENST00000305123.5:c.3473G>A	p.Gly1158Glu	p.G1158E	ENST00000305123	NM_005544.2	1158	gGa/gAa						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67591127	67591129	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	185	405	0	ENST00000274335.5:c.1721_1723delGAA	p.Arg574del	p.R574del	ENST00000274335		574	AGA/-						NEWRECORD																																																																									
PIK3CD	5293	MSKCC	GRCh37	1	9781912	9781912	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	154	366	0	ENST00000377346.4:c.2049G>T	p.Met683Ile	p.M683I	ENST00000377346	NM_005026.3	683	atG/atT						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16262204	16262204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	42	105	0	ENST00000375759.3:c.9469G>A	p.Glu3157Lys	p.E3157K	ENST00000375759	NM_015001.2	3157	Gag/Aag						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120458068	120458068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	522	676	0	ENST00000256646.2:c.7277C>T	p.Ser2426Leu	p.S2426L	ENST00000256646	NM_024408.3	2426	tCa/tTa						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29436872	29436872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	153	576	0	ENST00000389048.3:c.3721G>C	p.Glu1241Gln	p.E1241Q	ENST00000389048	NM_004304.4	1241	Gag/Cag						NEWRECORD																																																																									
EPCAM	4072	MSKCC	GRCh37	2	47612334	47612334	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	366	697	0	ENST00000263735.4:c.888G>C	p.Lys296Asn	p.K296N	ENST00000263735	NM_002354.2	296	aaG/aaC						NEWRECORD																																																																									
REL	5966	MSKCC	GRCh37	2	61147730	61147730	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	111	378	0	ENST00000295025.8:c.1040G>C	p.Arg347Thr	p.R347T	ENST00000295025	NM_002908.2	347	aGa/aCa						NEWRECORD																																																																									
IRS1	3667	MSKCC	GRCh37	2	227660458	227660458	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	84	300	0	ENST00000305123.5:c.2997G>C	p.Gln999His	p.Q999H	ENST00000305123	NM_005544.2	999	caG/caC						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66356281	66356281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	152	504	0	ENST00000273854.3:c.1216G>A	p.Glu406Lys	p.E406K	ENST00000273854	NM_004439.5	406	Gag/Aag						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187539282	187539282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	158	499	0	ENST00000441802.2:c.8458G>A	p.Glu2820Lys	p.E2820K	ENST00000441802	NM_005245.3	2820	Gaa/Aaa						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187628788	187628788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	156	498	0	ENST00000441802.2:c.2194G>A	p.Val732Met	p.V732M	ENST00000441802	NM_005245.3	732	Gtg/Atg						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157527839	157527839	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	125	448	0	ENST00000346085.5:c.5564G>C	p.Arg1855Thr	p.R1855T	ENST00000346085	NM_020732.3	1855	aGa/aCa						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70404456	70404456	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	148	543	0	ENST00000373644.4:c.1970C>A	p.Ala657Glu	p.A657E	ENST00000373644	NM_030625.2	657	gCa/gAa						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46242668	46242668	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	113	430	0	ENST00000334344.6:c.1630G>T	p.Glu544Ter	p.E544*	ENST00000334344	NM_152641.2	544	Gaa/Taa						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95572101	95572101	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1060503605		P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	167	503	0	ENST00000343455.3:c.3007C>T	p.Arg1003Ter	p.R1003*	ENST00000343455	NM_177438.2	1003	Cga/Tga						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76763940	76763940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	161	786	0	ENST00000373344.5:c.7368G>A	p.Met2456Ile	p.M2456I	ENST00000373344	NM_000489.3	2456	atG/atA						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76854897	76854897	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	194	695	0	ENST00000373344.5:c.5939C>G	p.Ser1980Cys	p.S1980C	ENST00000373344	NM_000489.3	1980	tCt/tGt						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56178236	56178236	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	325	603	0	ENST00000399503.3:c.3209del	p.Thr1070LysfsTer12	p.T1070Kfs*12	ENST00000399503	NM_005921.1	1070	aCa/aa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	269	521	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66509107	66509107	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	145	546	0	ENST00000273854.3:c.220G>T	p.Gly74Ter	p.G74*	ENST00000273854	NM_004439.5	74	Gga/Tga						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857494	9857494	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	96	424	0	ENST00000330684.3:c.3907G>T	p.Asp1303Tyr	p.D1303Y	ENST00000330684	NM_001134407.1	1303	Gac/Tac						NEWRECORD																																																																									
AURKA	6790	MSKCC	GRCh37	20	54958040	54958040	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0010089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	670	458	0	ENST00000312783.6:c.566+1G>A		p.X189_splice	ENST00000312783	NM_198436.1	189							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	195	482	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	107	521	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0015068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	145	381	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577543	7577543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	122	504	1	ENST00000269305.4:c.738G>A	p.Met246Ile	p.M246I	ENST00000269305	NM_001126112.2	246	atG/atA						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153250865	153250865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	83	368	0	ENST00000281708.4:c.1195G>T	p.Asp399Tyr	p.D399Y	ENST00000281708	NM_033632.3	399	Gat/Tat						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175302	112175303	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	CT			P-0015068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	103	232	0	ENST00000257430.4:c.4011_4012delinsCT	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1337	ctGCag/ctCTag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175319	112175319	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	104	220	0	ENST00000257430.4:c.4028C>G	p.Ser1343Cys	p.S1343C	ENST00000257430	NM_000038.5	1343	tCt/tGt						NEWRECORD																																																																									
PREX2	80243	MSKCC	GRCh37	8	68931794	68931794	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0015068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	98	399	0	ENST00000288368.4:c.224C>G	p.Ser75Ter	p.S75*	ENST00000288368	NM_024870.2	75	tCa/tGa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	17	894	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577586	7577586	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	39	862	0	ENST00000269305.4:c.695T>G	p.Ile232Ser	p.I232S	ENST00000269305	NM_001126112.2	232	aTc/aGc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	239	496	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1104	195	559	0	ENST00000263967.3:c.3012G>A	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atA						NEWRECORD																																																																									
RFWD2	64326	MSKCC	GRCh37	1	176050364	176050364	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1335	117	553	0	ENST00000367669.3:c.1201C>G	p.Arg401Gly	p.R401G	ENST00000367669	NM_022457.5	401	Cga/Gga						NEWRECORD																																																																									
PDCD1	5133	MSKCC	GRCh37	2	242793386	242793386	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs756100729		P-0010895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	256	529	0	ENST00000334409.5:c.691C>T	p.Arg231Ter	p.R231*	ENST00000334409	NM_005018.2	231	Cga/Tga						NEWRECORD																																																																									
FGFR1	2260	MSKCC	GRCh37	8	38287283	38287283	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1762	216	633	0	ENST00000425967.3:c.374T>A	p.Val125Glu	p.V125E	ENST00000425967	NM_001174067.1	125	gTg/gAg						NEWRECORD																																																																									
SYK	6850	MSKCC	GRCh37	9	93641094	93641094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	362	497	0	ENST00000375746.1:c.1440G>C	p.Met480Ile	p.M480I	ENST00000375746	NM_001174167.1	480	atG/atC						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133760322	133760322	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	126	443	0	ENST00000318560.5:c.2645C>G	p.Ser882Cys	p.S882C	ENST00000318560	NM_005157.4	882	tCt/tGt						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32914464	32914464	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1477	266	1025	0	ENST00000380152.3:c.5972C>G	p.Ala1991Gly	p.A1991G	ENST00000380152		1991	gCt/gGt						NEWRECORD																																																																									
YES1	7525	MSKCC	GRCh37	18	751762	751762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	29	402	0	ENST00000314574.4:c.314G>C	p.Arg105Thr	p.R105T	ENST00000314574	NM_005433.3	105	aGa/aCa						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63410556	63410556	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1505	81	886	3	ENST00000330258.3:c.2611C>T	p.Arg871Ter	p.R871*	ENST00000330258	NM_152424.3	871	Cga/Tga						NEWRECORD																																																																									
CDC73	79577	MSKCC	GRCh37	1	193099326	193099334	+	inframe_deletion	In_Frame_Del	DEL	GAAGACCTG	GAAGACCTG	-			P-0010895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	115	433	0	ENST00000367435.3:c.260_268del	p.Arg87_Asp90delinsAsn	p.R87_D90delinsN	ENST00000367435	NM_024529.4	87	aGAAGACCTGat/aat						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178917490	178917490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	183	341	0	ENST00000263967.3:c.365G>A	p.Gly122Asp	p.G122D	ENST00000263967	NM_006218.2	122	gGc/gAc						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150005125	150005125	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	49	531	0	ENST00000253339.5:c.1100C>G	p.Thr367Ser	p.T367S	ENST00000253339		367	aCt/aGt						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41729875	41729875	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	372	756	0	ENST00000242208.4:c.654G>C	p.Trp218Cys	p.W218C	ENST00000242208	NM_002192.2	218	tgG/tgC						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110438375	110438375	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			39	15	34	0	ENST00000375856.3:c.26C>G	p.Pro9Arg	p.P9R	ENST00000375856	NM_003749.2	9	cCg/cGg						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67663349	67663349	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	343	611	2	ENST00000264010.4:c.1750G>C	p.Glu584Gln	p.E584Q	ENST00000264010	NM_006565.3	584	Gag/Cag						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41222971	41222971	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	2015	750	11	ENST00000357654.3:c.4960del	p.Val1654CysfsTer4	p.V1654Cfs*4	ENST00000357654	NM_007294.3	1654	Gtg/tg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579422	7579434	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCTGGTGCAGG	GGGCTGGTGCAGG	CAC			P-0010758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	824	442	8	ENST00000269305.4:c.253_265delinsGTG	p.Pro85ValfsTer35	p.P85Vfs*35	ENST00000269305	NM_001126112.2	85	CCTGCACCAGCCCcc/GTGcc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0011300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	447	384	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174406	112174406	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	155	230	1	ENST00000257430.4:c.3115G>T	p.Gly1039Ter	p.G1039*	ENST00000257430	NM_000038.5	1039	Gga/Tga						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139393422	139393422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	345	424	1	ENST00000277541.6:c.6109G>T	p.Ala2037Ser	p.A2037S	ENST00000277541	NM_017617.3	2037	Gcc/Tcc						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49433784	49433784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	594	520	0	ENST00000301067.7:c.7769C>T	p.Ser2590Leu	p.S2590L	ENST00000301067	NM_003482.3	2590	tCg/tTg						NEWRECORD																																																																									
CDK4	1019	MSKCC	GRCh37	12	58144713	58144713	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	103	272	0	ENST00000257904.6:c.515C>G	p.Thr172Arg	p.T172R	ENST00000257904	NM_000075.3	172	aCa/aGa						NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88420245	88420245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	257	406	0	ENST00000360948.2:c.2441G>A	p.Arg814Gln	p.R814Q	ENST00000360948	NM_001012338.2	814	cGg/cAg						NEWRECORD																																																																									
TCF3	6929	MSKCC	GRCh37	19	1612205	1612205	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0011300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	228	333	0	ENST00000344749.5:c.1813+1G>A		p.X605_splice	ENST00000344749	NM_001136139.2	605							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0014775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	145	347	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA						NEWRECORD																																																																									
KMT2C	58508	MSKCC	GRCh37	7	151878803	151878803	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	106	521	0	ENST00000262189.6:c.6142C>T	p.Gln2048Ter	p.Q2048*	ENST00000262189	NM_170606.2	2048	Caa/Taa						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0010867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	687	484	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29684025	29684025	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	273	521	0	ENST00000358273.4:c.7786G>T	p.Val2596Phe	p.V2596F	ENST00000358273	NM_001042492.2	2596	Gtt/Ttt						NEWRECORD																																																																									
PIK3CB	5291	MSKCC	GRCh37	3	138374305	138374305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1121	60	606	1	ENST00000289153.2:c.3139G>A	p.Glu1047Lys	p.E1047K	ENST00000289153	NM_006219.2	1047	Gag/Aag						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30680556	30680556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	179	434	0	ENST00000376406.3:c.1163C>T	p.Ala388Val	p.A388V	ENST00000376406	NM_014641.2	388	gCt/gTt						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151843722	151843722	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	209	407	0	ENST00000262189.6:c.13993G>C	p.Gly4665Arg	p.G4665R	ENST00000262189	NM_170606.2	4665	Ggc/Cgc						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64572156	64572156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1042	246	702	1	ENST00000337652.1:c.1498C>T	p.Pro500Ser	p.P500S	ENST00000337652	NM_130803.2	500	Ccc/Tcc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579434	7579441	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCCGCC	GGGCCGCC	-			P-0011577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	164	381	0	ENST00000269305.4:c.246_253del	p.Ala83CysfsTer63	p.A83Cfs*63	ENST00000269305	NM_001126112.2	82	ccGGCGGCCCct/ccct						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576915	7576916	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0011577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	48	414	0	ENST00000269305.4:c.930_931del	p.Asn310LysfsTer26	p.N310Kfs*26	ENST00000269305	NM_001126112.2	310	aaCAac/aaac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0012452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	170	468	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0012452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	38	422	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142255042	142255042	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	32	194	0	ENST00000350721.4:c.3727G>T	p.Asp1243Tyr	p.D1243Y	ENST00000350721	NM_001184.3	1243	Gat/Tat						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72831972	72831972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1212	66	836	0	ENST00000268489.5:c.4609A>G	p.Lys1537Glu	p.K1537E	ENST00000268489	NM_006885.3	1537	Aag/Gag						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41522040	41522040	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	41	426	0	ENST00000263253.7:c.902A>T	p.Asn301Ile	p.N301I	ENST00000263253	NM_001429.3	301	aAc/aTc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	71	536	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40730870	40730870	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	35	572	0	ENST00000373198.4:c.3665A>G	p.His1222Arg	p.H1222R	ENST00000373198	NM_133170.3	1222	cAt/cGt						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149460390	149460390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1080	293	700	1	ENST00000286301.3:c.247C>T	p.Arg83Cys	p.R83C	ENST00000286301	NM_005211.3	83	Cgc/Tgc						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18650566	18650566	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	53	474	1	ENST00000266497.5:c.2777T>A	p.Leu926His	p.L926H	ENST00000266497		926	cTt/cAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	259	532	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0011468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	300	433	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
ALOX12B	242	MSKCC	GRCh37	17	7976509	7976509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	324	543	0	ENST00000319144.4:c.1883C>T	p.Thr628Met	p.T628M	ENST00000319144	NM_001139.2	628	aCg/aTg						NEWRECORD																																																																									
NCOA3	8202	MSKCC	GRCh37	20	46268399	46268399	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2249	132	1203	0	ENST00000371998.3:c.2786G>C	p.Arg929Thr	p.R929T	ENST00000371998		929	aGa/aCa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173657	112173658	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0011468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	222	486	0	ENST00000257430.4:c.2369_2370del	p.Arg790ThrfsTer8	p.R790Tfs*8	ENST00000257430	NM_000038.5	789	cAG/c						NEWRECORD																																																																									
IRS1	3667	MSKCC	GRCh37	2	227660504	227660521	+	inframe_deletion	In_Frame_Del	DEL	CTGGGCACTGCCCGGGTA	CTGGGCACTGCCCGGGTA	-			P-0011468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	145	325	0	ENST00000305123.5:c.2934_2951del	p.Thr979_Ser984del	p.T979_S984del	ENST00000305123	NM_005544.2	978	ccTACCCGGGCAGTGCCCAGc/ccc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0012922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	662	558	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0012922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	33	594	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	98	692	0	ENST00000269305.4:c.811G>C	p.Glu271Gln	p.E271Q	ENST00000269305	NM_001126112.2	271	Gag/Cag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1040	449	772	2	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47164123	47164123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	101	409	0	ENST00000409792.3:c.2003C>T	p.Pro668Leu	p.P668L	ENST00000409792	NM_014159.6	668	cCc/cTc						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187530423	187530423	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs138364727		P-0012922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	166	644	0	ENST00000441802.2:c.10120A>G	p.Ile3374Val	p.I3374V	ENST00000441802	NM_005245.3	3374	Att/Gtt						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9858112	9858112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1396	85	806	2	ENST00000330684.3:c.3289G>A	p.Asp1097Asn	p.D1097N	ENST00000330684	NM_001134407.1	1097	Gac/Aac						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9858738	9858738	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149698593		P-0014087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	94	500	0	ENST00000330684.3:c.2663C>T	p.Thr888Met	p.T888M	ENST00000330684	NM_001134407.1	888	aCg/aTg						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56489481	56489481	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	78	414	0	ENST00000267101.3:c.1946T>G	p.Ile649Arg	p.I649R	ENST00000267101	NM_001982.3	649	aTa/aGa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0014476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	244	524	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331							NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21549498	21549498	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	56	389	0	ENST00000382592.4:c.2778C>G	p.Ile926Met	p.I926M	ENST00000382592	NM_014572.2	926	atC/atG						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2103365	2103403	+	inframe_deletion	In_Frame_Del	DEL	AGGCGGTCGCGGATCTGTTGCAGCCGGAGCGGCCGCTGG	AGGCGGTCGCGGATCTGTTGCAGCCGGAGCGGCCGCTGG	-			P-0014476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	72	539	0	ENST00000219476.3:c.252_290del	p.Val85_Ala97del	p.V85_A97del	ENST00000219476	NM_000548.3	83	aAGGCGGTCGCGGATCTGTTGCAGCCGGAGCGGCCGCTGGag/aag						NEWRECORD																																																																									
ALOX12B	242	MSKCC	GRCh37	17	7982769	7982769	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	297	590	3	ENST00000319144.4:c.1016C>A	p.Pro339His	p.P339H	ENST00000319144	NM_001139.2	339	cCc/cAc						NEWRECORD																																																																									
XPO1	7514	MSKCC	GRCh37	2	61726032	61726034	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0014476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1298	177	462	0	ENST00000401558.2:c.605_607del	p.Phe202del	p.F202del	ENST00000401558	NM_003400.3	202	tTCTca/tca						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66201834	66201834	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	53	350	1	ENST00000273854.3:c.2668G>T	p.Ala890Ser	p.A890S	ENST00000273854	NM_004439.5	890	Gcg/Tcg						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56181831	56181831	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	189	380	0	ENST00000399503.3:c.4055A>T	p.Gln1352Leu	p.Q1352L	ENST00000399503	NM_005921.1	1352	cAg/cTg						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139398874	139399572	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGTCCAGGGGAAGGCAGTGGCCCAGGAAAAGGGTGTGGCTGTGGGGTCAGGGCCCTGAGCTGGAATGCTGCCTCTACTCCTTGCCTGCGCAGGCCCTGAAGTCCCAGGTCCTCTCGGAACCTCCGTCTCTTTTACCATAAAGTGGGGAGAGTACTGCTTGCCATGGCGCCGGCCGTGAGGGGCAGGGAGGCCGTCGGGGAGGGCCCAGGAGAGTTGCGGGGATTGACCGTGGGCGCCGGGTCTCACTCACCCGCGGACGTCCATGGGGTCCAGCTCCCTCCGCCGCCGCCCACCCTCGCTGCCACCAGGGAGCAGCGAGGCCTTCACCTGGCCCAGCAGGGCGTCAGGTGCGGCCCAGCCCTCGGCGGCACGCTTGATGGGGTGCTTGCGCAGCTCCTCCTCGCGGCCGTAGTAGGGGAAGATCATCTGCTGGCCGTGTGCGTCACGCTTGAAGACCACGTTGGTGTGCAGCACGCGGCTGAGCTCCCGCAGGAAGTGGAAGGAGCTGTTGCGCAGCTGCTCCGGCGGCATCAGCACCACCACCACCAGCGTGCCGGCCGCCAGCCTCTCGGGTACATGCTCCGCACAGTCCAGCCCGTCCCACTCGCACTCCGCGCTGTTGCAGCCCTGGTCGCAGTGCCCGTCGCTGAAGTGGTCCTTGCAGTACTGGTCGTACAGGGGGCTGTGGGGGGCGGGAC	CTGTCCAGGGGAAGGCAGTGGCCCAGGAAAAGGGTGTGGCTGTGGGGTCAGGGCCCTGAGCTGGAATGCTGCCTCTACTCCTTGCCTGCGCAGGCCCTGAAGTCCCAGGTCCTCTCGGAACCTCCGTCTCTTTTACCATAAAGTGGGGAGAGTACTGCTTGCCATGGCGCCGGCCGTGAGGGGCAGGGAGGCCGTCGGGGAGGGCCCAGGAGAGTTGCGGGGATTGACCGTGGGCGCCGGGTCTCACTCACCCGCGGACGTCCATGGGGTCCAGCTCCCTCCGCCGCCGCCCACCCTCGCTGCCACCAGGGAGCAGCGAGGCCTTCACCTGGCCCAGCAGGGCGTCAGGTGCGGCCCAGCCCTCGGCGGCACGCTTGATGGGGTGCTTGCGCAGCTCCTCCTCGCGGCCGTAGTAGGGGAAGATCATCTGCTGGCCGTGTGCGTCACGCTTGAAGACCACGTTGGTGTGCAGCACGCGGCTGAGCTCCCGCAGGAAGTGGAAGGAGCTGTTGCGCAGCTGCTCCGGCGGCATCAGCACCACCACCACCAGCGTGCCGGCCGCCAGCCTCTCGGGTACATGCTCCGCACAGTCCAGCCCGTCCCACTCGCACTCCGCGCTGTTGCAGCCCTGGTCGCAGTGCCCGTCGCTGAAGTGGTCCTTGCAGTACTGGTCGTACAGGGGGCTGTGGGGGGCGGGAC	-			P-0014476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	490	13	0	ENST00000277541.6:c.4587-15_5018+252del		p.X1529_splice	ENST00000277541	NM_017617.3	1529							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	324	482	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578202	7578202	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	552	687	0	ENST00000269305.4:c.647T>G	p.Val216Gly	p.V216G	ENST00000269305	NM_001126112.2	216	gTg/gGg						NEWRECORD																																																																									
RYBP	23429	MSKCC	GRCh37	3	72427705	72427705	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	278	384	0	ENST00000477973.2:c.783T>G	p.Phe262Cys	p.F262C	ENST00000477973	NM_012234.5	262	tTt/tGt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604707	48604707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	354	592	0	ENST00000342988.3:c.1529G>A	p.Gly510Glu	p.G510E	ENST00000342988	NM_005359.5	510	gGa/gAa						NEWRECORD																																																																									
GATA1	2623	MSKCC	GRCh37	X	48652297	48652297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	572	451	0	ENST00000376670.3:c.968G>A	p.Gly323Asp	p.G323D	ENST00000376670	NM_002049.3	323	gGc/gAc						NEWRECORD																																																																									
HRAS	3265	MSKCC	GRCh37	11	534285	534285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	51	649	1	ENST00000311189.7:c.38G>T	p.Gly13Val	p.G13V	ENST00000311189		13	gGt/gTt						NEWRECORD																																																																									
CBL	867	MSKCC	GRCh37	11	119144724	119144724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	73	452	1	ENST00000264033.4:c.737G>A	p.Arg246Gln	p.R246Q	ENST00000264033	NM_005188.3	246	cGa/cAa						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70339937	70339937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1388	106	890	1	ENST00000374080.3:c.470C>A	p.Ala157Asp	p.A157D	ENST00000374080		157	gCc/gAc						NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52716291	52716305	+	inframe_deletion	In_Frame_Del	DEL	GCCCACTCTGCGCCA	GCCCACTCTGCGCCA	-			P-0013458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	130	558	0	ENST00000322088.6:c.736_750del	p.Pro246_Gln250del	p.P246_Q250del	ENST00000322088	NM_014225.5	245	atGCCCACTCTGCGCCAg/atg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207198	1207203	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	AAGAAG	AAGAAG	T			P-0013458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	78	422	0	ENST00000326873.7:c.286_290+1delinsT		p.X96_splice	ENST00000326873	NM_000455.4	96							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0013856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	106	410	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0013856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	113	437	3	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114912149	114912149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	157	1025	3	ENST00000543371.1:c.1219C>T	p.Arg407Ter	p.R407*	ENST00000543371	NM_001198531.1	407	Cga/Tga						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142268514	142268514	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	94	291	0	ENST00000350721.4:c.2978G>A	p.Arg993Lys	p.R993K	ENST00000350721	NM_001184.3	993	aGg/aAg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0010030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	407	397	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	497	421	1	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117609803	117609803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	293	564	0	ENST00000368508.3:c.6896C>T	p.Ser2299Phe	p.S2299F	ENST00000368508	NM_002944.2	2299	tCt/tTt						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55372209	55372209	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			55	90	72	0	ENST00000297316.4:c.899T>C	p.Met300Thr	p.M300T	ENST00000297316	NM_022454.3	300	aTg/aCg						NEWRECORD																																																																									
SDHD	6392	MSKCC	GRCh37	11	111958616	111958616	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	36	231	0	ENST00000375549.3:c.88C>A	p.His30Asn	p.H30N	ENST00000375549	NM_003002.3	30	Cat/Aat						NEWRECORD																																																																									
MDM2	4193	MSKCC	GRCh37	12	69233118	69233118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	225	422	0	ENST00000462284.1:c.983G>A	p.Cys328Tyr	p.C328Y	ENST00000462284	NM_002392.5	328	tGt/tAt						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5258031	5258031	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	125	360	0	ENST00000357368.4:c.703C>T	p.Arg235Ter	p.R235*	ENST00000357368	NM_002850.3	235	Cga/Tga						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108139269	108139269	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	739	482	1	ENST00000278616.4:c.2772del	p.Arg925GlyfsTer4	p.R925Gfs*4	ENST00000278616	NM_000051.3	924	cGg/cg						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602788	10602790	+	inframe_deletion	In_Frame_Del	DEL	CGT	CGT	-			P-0010030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	492	408	0	ENST00000171111.5:c.788_790del	p.Tyr263_Val264delinsPhe	p.Y263_V264delinsF	ENST00000171111	NM_203500.1	263	tACGtc/ttc						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143067144	143067145	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0010030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	273	351	0	ENST00000262992.4:c.1568_1569delinsCT	p.Arg523Thr	p.R523T	ENST00000262992	NM_001101669.1	523	aGG/aCT						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81350119	81350120	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0010030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	541	484	1	ENST00000222390.5:c.1212_1213delinsAA	p.Gln405Lys	p.Q405K	ENST00000222390	NM_000601.4	404	tcCCaa/tcAAaa						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89498432	89498432	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	57	445	0	ENST00000336596.2:c.2404A>G	p.Thr802Ala	p.T802A	ENST00000336596	NM_005233.5	802	Acg/Gcg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89624296	89624298	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0011225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	33	276	0	ENST00000371953.3:c.70_72del	p.Asp24del	p.D24del	ENST00000371953	NM_000314.4	24	GAC/-						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44969327	44969327	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	126	272	1	ENST00000377967.4:c.4009G>T	p.Glu1337Ter	p.E1337*	ENST00000377967	NM_021140.2	1337	Gag/Tag						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061226	38061237	+	inframe_deletion	In_Frame_Del	DEL	CGAACATGTTGC	CGAACATGTTGC	-			P-0010752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	34	416	0	ENST00000250448.2:c.752_763delGCAACATGTTCG	p.Gly251_Phe254del	p.G251_F254del	ENST00000250448	NM_004496.3	251	gGCAACATGTTCGag/gag						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149512425	149512425	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	33	443	0	ENST00000261799.4:c.1015G>C	p.Val339Leu	p.V339L	ENST00000261799	NM_002609.3	339	Gtg/Ctg						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108143315	108143315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	17	471	0	ENST00000278616.4:c.3134G>A	p.Cys1045Tyr	p.C1045Y	ENST00000278616	NM_000051.3	1045	tGc/tAc						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2226860	2226860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	11	169	1	ENST00000398665.3:c.4340C>T	p.Ala1447Val	p.A1447V	ENST00000398665	NM_032482.2	1447	gCg/gTg						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692844	89692844	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			16	188	134	0	ENST00000371953.3:c.328C>T	p.Gln110Ter	p.Q110*	ENST00000371953	NM_000314.4	110	Caa/Taa						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50459522	50459522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	495	519	1	ENST00000331340.3:c.811G>A	p.Val271Ile	p.V271I	ENST00000331340	NM_006060.4	271	Gtc/Atc						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1119	969	930	3	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67660529	67660529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	27	500	0	ENST00000264010.4:c.1429C>T	p.His477Tyr	p.H477Y	ENST00000264010	NM_006565.3	477	Cat/Tat						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68853186	68853193	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	TCGGATTT	TCGGATTT	-			P-0011590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	66	460	0	ENST00000261769.5:c.1569_1576del	p.Tyr523Ter	p.Y523*	ENST00000261769	NM_004360.3	523	taTCGGATTTgg/tagg						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52442569	52442569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	172	389	1	ENST00000460680.1:c.176G>A	p.Arg59Gln	p.R59Q	ENST00000460680	NM_004656.3	59	cGg/cAg						NEWRECORD																																																																									
MYCL1	4610	MSKCC	GRCh37	1	40367558	40367561	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	CATG	CATG	-			P-0014576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12	4	17	0	ENST00000397332.2:c.-1_3delCATG		p.*1fs*	ENST00000397332	NM_001033082.2	1							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577137	7577138	+	missense_variant	Missense_Mutation	DNP	CC	CC	GG			P-0014576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	484	575	1	ENST00000269305.4:c.800_801inv	p.Arg267Pro	p.R267P	ENST00000269305	NM_001126112.2	267	cGG/cCC						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176638900	176638900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	267	552	0	ENST00000439151.2:c.3500G>A	p.Arg1167His	p.R1167H	ENST00000439151	NM_022455.4	1167	cGc/cAc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	232	459	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66189892	66189892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	92	610	0	ENST00000273854.3:c.3054G>T	p.Lys1018Asn	p.K1018N	ENST00000273854	NM_004439.5	1018	aaG/aaT						NEWRECORD																																																																									
WT1	7490	MSKCC	GRCh37	11	32456842	32456842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	42	176	1	ENST00000332351.3:c.50C>T	p.Thr17Met	p.T17M	ENST00000332351	NM_024426.4	17	aCg/aTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576857	7576857	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	182	563	0	ENST00000269305.4:c.989T>G	p.Leu330Arg	p.L330R	ENST00000269305	NM_001126112.2	330	cTt/cGt						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47041657	47041657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	191	350	1	ENST00000329236.7:c.1648G>T	p.Glu550Ter	p.E550*	ENST00000329236	NM_001204466.1	550	Gag/Tag						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27105553	27105553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	105	425	1	ENST00000324856.7:c.5164C>T	p.Arg1722Ter	p.R1722*	ENST00000324856	NM_006015.4	1722	Cga/Tga						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68853327	68853327	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0014927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	153	505	0	ENST00000261769.5:c.1710del	p.Asn570LysfsTer14	p.N570Kfs*14	ENST00000261769	NM_004360.3	570	aaT/aa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178928066	178928086	+	protein_altering_variant	In_Frame_Del	DEL	ACCTCATGGATTAGAAGATTT	ACCTCATGGATTAGAAGATTT	CCC			P-0014927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	73	533	1	ENST00000263967.3:c.1344_1364delinsCCC	p.His450_Leu455del	p.H450_L455del	ENST00000263967	NM_006218.2	448	gtACCTCATGGATTAGAAGATTTg/gtCCCg						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128851498	128851498	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	124	532	0	ENST00000249373.3:c.1823A>G	p.Asn608Ser	p.N608S	ENST00000249373	NM_005631.4	608	aAt/aGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	328	693	0	ENST00000269305.4:c.332T>A	p.Leu111Gln	p.L111Q	ENST00000269305	NM_001126112.2	111	cTg/cAg						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023895	27023895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	42	120	0	ENST00000324856.7:c.1001C>T	p.Ser334Leu	p.S334L	ENST00000324856	NM_006015.4	334	tCg/tTg						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023756	27023756	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	115	494	0	ENST00000324856.7:c.862C>T	p.Gln288Ter	p.Q288*	ENST00000324856	NM_006015.4	288	Cag/Tag						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120512286	120512286	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs144936899		P-0014809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	125	407	0	ENST00000256646.2:c.956A>G	p.Asn319Ser	p.N319S	ENST00000256646	NM_024408.3	319	aAt/aGt						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43600402	43600402	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0014809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	47	304	0	ENST00000355710.3:c.628G>C	p.Glu210Gln	p.E210Q	ENST00000355710	NM_020975.4	210	Gag/Cag						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108119736	108119736	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	53	274	0	ENST00000278616.4:c.1142G>C	p.Ser381Thr	p.S381T	ENST00000278616	NM_000051.3	381	aGt/aCt						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46244395	46244395	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	59	435	1	ENST00000334344.6:c.2489A>T	p.Gln830Leu	p.Q830L	ENST00000334344	NM_152641.2	830	cAa/cTa						NEWRECORD																																																																									
YES1	7525	MSKCC	GRCh37	18	724498	724498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	49	358	0	ENST00000314574.4:c.1558G>A	p.Glu520Lys	p.E520K	ENST00000314574	NM_005433.3	520	Gaa/Aaa						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5231576	5231576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	96	323	1	ENST00000357368.4:c.1900G>A	p.Ala634Thr	p.A634T	ENST00000357368	NM_002850.3	634	Gcc/Acc						NEWRECORD																																																																									
MLL4	9757	MSKCC	GRCh37	19	36212401	36212401	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	149	690	0	ENST00000222270.7:c.2152G>T	p.Glu718Ter	p.E718*	ENST00000222270	NM_014727.1	718	Gag/Tag						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29754921	29754921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	109	410	1	ENST00000389048.3:c.1014G>A	p.Met338Ile	p.M338I	ENST00000389048	NM_004304.4	338	atG/atA						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30691889	30691889	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	64	361	0	ENST00000359013.4:c.466G>C	p.Glu156Gln	p.E156Q	ENST00000359013	NM_001024847.2	156	Gag/Cag						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128845176	128845176	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	129	567	0	ENST00000249373.3:c.670G>C	p.Glu224Gln	p.E224Q	ENST00000249373	NM_005631.4	224	Gag/Cag						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974805	21974808	+	frameshift_variant	Frame_Shift_Del	DEL	TGCT	TGCT	-			P-0014809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	19	110	0	ENST00000304494.5:c.19_22del	p.Ser7AlafsTer18	p.S7Afs*18	ENST00000304494	NM_000077.4	7	AGCAgc/gc						NEWRECORD																																																																									
BIRC3	330	MSKCC	GRCh37	11	102195728	102195731	+	missense_variant	Missense_Mutation	ONP	ACTG	ACTG	TCTT			P-0014809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	59	272	0	ENST00000263464.3:c.488_491delinsTCTT	p.His163_Cys164delinsLeuPhe	p.H163_C164delinsLF	ENST00000263464	NM_001165.4	163	cACTGt/cTCTTt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	210	403	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786204041		P-0012847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	340	788	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41729465	41729465	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747474916		P-0012847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1351	137	1243	1	ENST00000242208.4:c.1064C>T	p.Pro355Leu	p.P355L	ENST00000242208	NM_002192.2	355	cCg/cTg						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0014062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	10	231	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0014062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	127	322	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602646	10602646	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	99	410	0	ENST00000171111.5:c.932A>G	p.His311Arg	p.H311R	ENST00000171111	NM_203500.1	311	cAc/cGc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221302	1221302	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	173	449	0	ENST00000326873.7:c.827del	p.Gly276AlafsTer11	p.G276Afs*11	ENST00000326873	NM_000455.4	275	ccG/cc						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47039389	47039389	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	162	276	0	ENST00000329236.7:c.781del	p.Gln261ArgfsTer4	p.Q261Rfs*4	ENST00000329236	NM_001204466.1	261	Cag/ag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0013371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	269	536	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0013732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	169	717	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc						NEWRECORD																																																																									
SMARCD1	6602	MSKCC	GRCh37	12	50479963	50479963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	204	849	0	ENST00000394963.4:c.197G>A	p.Gly66Asp	p.G66D	ENST00000394963	NM_003076.4	66	gGc/gAc						NEWRECORD																																																																									
CDK8	1024	MSKCC	GRCh37	13	26828873	26828873	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	118	588	0	ENST00000381527.3:c.95A>T	p.Tyr32Phe	p.Y32F	ENST00000381527	NM_001260.1	32	tAt/tTt						NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41730140	41730140	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1461	273	1173	0	ENST00000242208.4:c.389G>A	p.Gly130Glu	p.G130E	ENST00000242208	NM_002192.2	130	gGa/gAa						NEWRECORD																																																																									
NBN	4683	MSKCC	GRCh37	8	90965912	90965912	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	87	315	0	ENST00000265433.3:c.1405del	p.Asp469MetfsTer15	p.D469Mfs*15	ENST00000265433	NM_002485.4	469	Gat/at						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0014423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	169	516	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0014423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	124	628	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc						NEWRECORD																																																																									
BCL2L11	10018	MSKCC	GRCh37	2	111921786	111921786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	50	384	1	ENST00000393256.3:c.575G>A	p.Arg192His	p.R192H	ENST00000393256	NM_006538.4	192	cGc/cAc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591901	48591901	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	35	397	0	ENST00000342988.3:c.1064A>T	p.Asp355Val	p.D355V	ENST00000342988	NM_005359.5	355	gAc/gTc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249149	55249149	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	137	707	0	ENST00000275493.2:c.2447A>G	p.Asn816Ser	p.N816S	ENST00000275493	NM_005228.3	816	aAc/aGc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	38	428	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0013153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	52	849	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508823	106508823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	39	443	0	ENST00000359195.3:c.817C>T	p.Arg273Cys	p.R273C	ENST00000359195	NM_002649.2	273	Cgc/Tgc						NEWRECORD																																																																									
MAP2K1	5604	MSKCC	GRCh37	15	66729115	66729115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	38	627	0	ENST00000307102.5:c.323G>T	p.Arg108Leu	p.R108L	ENST00000307102	NM_002755.3	108	cGg/cTg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48573492	48573496	+	frameshift_variant	Frame_Shift_Del	DEL	CATAG	CATAG	-			P-0013153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	44	609	0	ENST00000342988.3:c.76_80del	p.His26ThrfsTer6	p.H26Tfs*6	ENST00000342988	NM_005359.5	26	CATAGa/a						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0012110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	219	619	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt						NEWRECORD																																																																									
RARA	5914	MSKCC	GRCh37	17	38512383	38512383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	110	296	0	ENST00000254066.5:c.1294C>T	p.Arg432Trp	p.R432W	ENST00000254066	NM_000964.3	432	Cgg/Tgg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174884	112174884	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0012110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	176	329	1	ENST00000257430.4:c.3593C>G	p.Ser1198Ter	p.S1198*	ENST00000257430	NM_000038.5	1198	tCa/tGa						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0013950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	17	502	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52442557	52442557	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	216	377	0	ENST00000460680.1:c.188C>G	p.Ser63Cys	p.S63C	ENST00000460680	NM_004656.3	63	tCt/tGt						NEWRECORD																																																																									
HIST1H3G	8355	MSKCC	GRCh37	6	26271503	26271503	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1725	155	914	0	ENST00000305910.3:c.110A>T	p.Lys37Met	p.K37M	ENST00000305910	NM_003534.2	37	aAg/aTg						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21994296	21994296	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201877069		P-0011397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	108	391	1	ENST00000361570.3:c.158G>A	p.Arg53Gln	p.R53Q	ENST00000361570	NM_058195.3	53	cGg/cAg						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5214706	5214706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	71	501	0	ENST00000357368.4:c.4360G>A	p.Gly1454Ser	p.G1454S	ENST00000357368	NM_002850.3	1454	Ggc/Agc						NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913500		P-0014523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	78	259	0	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49418643	49418643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	281	570	0	ENST00000301067.7:c.15871G>A	p.Glu5291Lys	p.E5291K	ENST00000301067	NM_003482.3	5291	Gag/Aag						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49445901	49445901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	203	941	0	ENST00000301067.7:c.1565C>T	p.Pro522Leu	p.P522L	ENST00000301067	NM_003482.3	522	cCa/cTa						NEWRECORD																																																																									
HNF1A	6927	MSKCC	GRCh37	12	121435289	121435289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	150	529	1	ENST00000257555.6:c.1322C>T	p.Thr441Met	p.T441M	ENST00000257555		441	aCg/aTg						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7166390	7166390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	310	551	0	ENST00000302850.5:c.1636G>C	p.Asp546His	p.D546H	ENST00000302850	NM_000208.2	546	Gac/Cac						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25471057	25471057	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	167	545	0	ENST00000264709.3:c.704del	p.Glu235GlyfsTer81	p.E235Gfs*81	ENST00000264709	NM_175629.2	235	gAg/gg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	128	399	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	38	231	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0010372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	133	283	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt						NEWRECORD																																																																									
ETV6	2120	MSKCC	GRCh37	12	12038893	12038893	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	179	415	0	ENST00000396373.4:c.1186A>G	p.Arg396Gly	p.R396G	ENST00000396373	NM_001987.4	396	Aga/Gga						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89468354	89468354	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0010372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	63	262	0	ENST00000336596.2:c.1889-1G>A		p.X630_splice	ENST00000336596	NM_005233.5	630							NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16256846	16256846	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	44	650	1	ENST00000375759.3:c.4111C>T	p.Arg1371Ter	p.R1371*	ENST00000375759	NM_015001.2	1371	Cga/Tga						NEWRECORD																																																																									
ACVR1	90	MSKCC	GRCh37	2	158626907	158626907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	91	1055	0	ENST00000263640.3:c.763G>T	p.Val255Leu	p.V255L	ENST00000263640	NM_001105.4	255	Gtg/Ttg						NEWRECORD																																																																									
SOX2	6657	MSKCC	GRCh37	3	181430756	181430756	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	122	614	3	ENST00000325404.1:c.608G>T	p.Ser203Ile	p.S203I	ENST00000325404	NM_003106.3	203	aGc/aTc						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66230830	66230830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	35	850	0	ENST00000273854.3:c.2141C>T	p.Thr714Ile	p.T714I	ENST00000273854	NM_004439.5	714	aCt/aTt						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508556	106508556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	64	259	0	ENST00000359195.3:c.550C>A	p.Arg184Ser	p.R184S	ENST00000359195	NM_002649.2	184	Cgc/Agc						NEWRECORD																																																																									
FANCC	2176	MSKCC	GRCh37	9	97912288	97912288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	163	684	1	ENST00000289081.3:c.603G>T	p.Glu201Asp	p.E201D	ENST00000289081	NM_000136.2	201	gaG/gaT						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18435600	18435600	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	94	649	0	ENST00000266497.5:c.585T>A	p.Ser195Arg	p.S195R	ENST00000266497		195	agT/agA						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	99	635	1	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49054172	49054172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	46	561	0	ENST00000267163.4:c.2752G>A	p.Asp918Asn	p.D918N	ENST00000267163	NM_000321.2	918	Gat/Aat						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72829448	72829448	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	179	1077	0	ENST00000268489.5:c.7133C>G	p.Thr2378Ser	p.T2378S	ENST00000268489	NM_006885.3	2378	aCc/aGc						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29509596	29509596	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	82	736	0	ENST00000358273.4:c.801G>A	p.Trp267Ter	p.W267*	ENST00000358273	NM_001042492.2	267	tgG/tgA						NEWRECORD																																																																									
ARAF	369	MSKCC	GRCh37	X	47429011	47429011	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	80	922	0	ENST00000377045.4:c.1374C>A	p.Ser458Arg	p.S458R	ENST00000377045	NM_001654.4	458	agC/agA						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63410884	63410884	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	180	1002	0	ENST00000330258.3:c.2283G>T	p.Lys761Asn	p.K761N	ENST00000330258	NM_152424.3	761	aaG/aaT						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63412221	63412221	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	197	1067	0	ENST00000330258.3:c.946G>C	p.Val316Leu	p.V316L	ENST00000330258	NM_152424.3	316	Gtg/Ctg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	94	478	0	ENST00000269305.4:c.524del	p.Arg175ProfsTer72	p.R175Pfs*72	ENST00000269305	NM_001126112.2	175	cGc/cc						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16258625	16258630	+	stop_gained	Nonsense_Mutation	ONP	GAGGAG	GAGGAG	TAGGAA			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	29	300	0	ENST00000375759.3:c.5890_5895delinsTAGGAA	p.Glu1964Ter	p.E1964*	ENST00000375759	NM_015001.2	1964	GAGGAG/TAGGAA						NEWRECORD																																																																									
XPO1	7514	MSKCC	GRCh37	2	61720134	61720134	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	55	638	0	ENST00000401558.2:c.1300G>C	p.Glu434Gln	p.E434Q	ENST00000401558	NM_003400.3	434	Gag/Cag						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47139454	47139454	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1152	63	736	0	ENST00000409792.3:c.5133G>C	p.Lys1711Asn	p.K1711N	ENST00000409792	NM_014159.6	1711	aaG/aaC						NEWRECORD																																																																									
FOXL2	668	MSKCC	GRCh37	3	138665358	138665358	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	49	552	0	ENST00000330315.3:c.207G>C	p.Glu69Asp	p.E69D	ENST00000330315	NM_023067.3	69	gaG/gaC						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	94120855	94120855	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1347	113	750	0	ENST00000369303.4:c.196A>C	p.Thr66Pro	p.T66P	ENST00000369303	NM_004440.3	66	Acc/Ccc						NEWRECORD																																																																									
FYN	2534	MSKCC	GRCh37	6	112035575	112035575	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	73	652	0	ENST00000368678.4:c.319G>C	p.Glu107Gln	p.E107Q	ENST00000368678		107	Gaa/Caa						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2956955	2956955	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	74	392	1	ENST00000396946.4:c.2672G>T	p.Arg891Leu	p.R891L	ENST00000396946	NM_032415.4	891	cGa/cTa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8460538	8460538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	38	441	0	ENST00000356435.5:c.3748G>A	p.Val1250Met	p.V1250M	ENST00000356435		1250	Gtg/Atg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49441780	49441780	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	95	733	1	ENST00000301067.7:c.4204C>T	p.Gln1402Ter	p.Q1402*	ENST00000301067	NM_003482.3	1402	Cag/Tag						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42052520	42052520	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	153	671	0	ENST00000219905.7:c.7192-1G>T		p.X2398_splice	ENST00000219905	NM_001164273.1	2398							NEWRECORD																																																																									
BLM	641	MSKCC	GRCh37	15	91304065	91304065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	58	631	0	ENST00000355112.3:c.1462G>A	p.Glu488Lys	p.E488K	ENST00000355112	NM_000057.2	488	Gaa/Aaa						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9857551	9857551	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	50	409	0	ENST00000330684.3:c.3850C>G	p.Leu1284Val	p.L1284V	ENST00000330684	NM_001134407.1	1284	Cta/Gta						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	37	450	1	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	84	590	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37856552	37856552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	291	454	0	ENST00000269571.5:c.61G>T	p.Ala21Ser	p.A21S	ENST00000269571		21	Gcg/Tcg						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11141449	11141449	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	51	599	0	ENST00000344626.4:c.3426C>G	p.Phe1142Leu	p.F1142L	ENST00000344626	NM_003072.3	1142	ttC/ttG						NEWRECORD																																																																									
BRD4	23476	MSKCC	GRCh37	19	15375572	15375572	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	90	416	0	ENST00000263377.2:c.855G>C	p.Lys285Asn	p.K285N	ENST00000263377	NM_058243.2	285	aaG/aaC						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17940919	17940919	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	30	446	1	ENST00000458235.1:c.3205G>A	p.Glu1069Lys	p.E1069K	ENST00000458235	NM_000215.3	1069	Gag/Aag						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	43	333	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47038822	47038822	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	56	157	0	ENST00000329236.7:c.598C>T	p.Gln200Ter	p.Q200*	ENST00000329236	NM_001204466.1	200	Cag/Tag						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123224449	123224449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	70	365	0	ENST00000218089.9:c.3302G>A	p.Ser1101Asn	p.S1101N	ENST00000218089	NM_001042749.1	1101	aGt/aAt						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0014803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	400	404	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578533	7578536	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0014803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	439	811	0	ENST00000269305.4:c.394_397del	p.Lys132CysfsTer37	p.K132Cfs*37	ENST00000269305	NM_001126112.2	132	AAGAtg/tg						NEWRECORD																																																																									
SMARCB1	6598	MSKCC	GRCh37	22	24135804	24135805	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0010092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1379	274	602	0	ENST00000263121.7:c.294_295del	p.Glu98AspfsTer7	p.E98Dfs*7	ENST00000263121	NM_003073.3	97	gaAGag/gaag						NEWRECORD																																																																									
SMARCB1	6598	MSKCC	GRCh37	22	24145567	24145567	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	229	461	0	ENST00000263121.7:c.586del	p.Asp196MetfsTer13	p.D196Mfs*13	ENST00000263121	NM_003073.3	196	Gat/at						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	37	542	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57857517	57857517	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1910	126	995	0	ENST00000228682.2:c.43G>T	p.Glu15Ter	p.E15*	ENST00000228682	NM_005269.2	15	Gag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs397516435		P-0012387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1211	50	715	0	ENST00000269305.4:c.586C>G	p.Arg196Gly	p.R196G	ENST00000269305	NM_001126112.2	196	Cga/Gga						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67591115	67591123	+	inframe_deletion	In_Frame_Del	DEL	CTTATCCAG	CTTATCCAG	-			P-0012387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	55	373	0	ENST00000274335.5:c.1710_1718del	p.Ile571_Leu573del	p.I571_L573del	ENST00000274335		570	CTTATCCAG/-						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	8	654	1	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga						NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0013159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	10	559	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt						NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50919882	50919882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	10	719	1	ENST00000440232.2:c.2969G>A	p.Arg990His	p.R990H	ENST00000440232	NM_002691.3	990	cGc/cAc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106904	27106904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	348	507	3	ENST00000324856.7:c.6515C>T	p.Ala2172Val	p.A2172V	ENST00000324856	NM_006015.4	2172	gCc/gTc						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55139873	55139873	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	237	426	0	ENST00000257290.5:c.1534C>T	p.Arg512Ter	p.R512*	ENST00000257290	NM_006206.4	512	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0012106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	139	323	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	140	431	0	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57858985	57858985	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142957882		P-0012106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1567	216	669	2	ENST00000228682.2:c.481C>T	p.Arg161Trp	p.R161W	ENST00000228682	NM_005269.2	161	Cgg/Tgg						NEWRECORD																																																																									
ZRSR2	8233	MSKCC	GRCh37	X	15841201	15841201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	171	214	0	ENST00000307771.7:c.1285C>T	p.Arg429Cys	p.R429C	ENST00000307771	NM_005089.3	429	Cgc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577113	7577113	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	55	479	0	ENST00000269305.4:c.825T>G	p.Cys275Trp	p.C275W	ENST00000269305	NM_001126112.2	275	tgT/tgG						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0010300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	139	380	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37880219	37880220	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC			P-0010300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	799	665	2	ENST00000269571.5:c.2263_2264delTTinsCC	p.Leu755Pro	p.L755P	ENST00000269571		755	TTg/CCg						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151864332	151864334	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0010300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	135	692	0	ENST00000262189.6:c.9647_9649del	p.Gln3216del	p.Q3216del	ENST00000262189	NM_170606.2	3216	cAACgt/cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	94	524	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149449781	149449781	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	106	509	0	ENST00000286301.3:c.1283A>T	p.Asn428Ile	p.N428I	ENST00000286301	NM_005211.3	428	aAc/aTc						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180076538	180076538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	59	178	0	ENST00000261937.6:c.8G>T	p.Arg3Leu	p.R3L	ENST00000261937	NM_182925.4	3	cGg/cTg						NEWRECORD																																																																									
PRDM1	639	MSKCC	GRCh37	6	106554879	106554879	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	41	349	1	ENST00000369096.4:c.1996G>C	p.Ala666Pro	p.A666P	ENST00000369096	NM_001198.3	666	Gcc/Ccc						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106513335	106513335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1150	101	560	0	ENST00000359195.3:c.2239C>A	p.Leu747Ile	p.L747I	ENST00000359195	NM_002649.2	747	Ctt/Att						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8375991	8375991	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1144	149	694	0	ENST00000356435.5:c.4606C>G	p.Arg1536Gly	p.R1536G	ENST00000356435		1536	Cgt/Ggt						NEWRECORD																																																																									
LMO1	4004	MSKCC	GRCh37	11	8251946	8251946	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	71	701	0	ENST00000335790.3:c.131G>C	p.Trp44Ser	p.W44S	ENST00000335790	NM_002315.2	44	tGg/tCg						NEWRECORD																																																																									
H3F3C	440093	MSKCC	GRCh37	12	31944943	31944943	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	73	439	0	ENST00000340398.3:c.158G>T	p.Arg53Leu	p.R53L	ENST00000340398	NM_001013699.2	53	cGt/cTt						NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89349904	89349904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2282	136	1271	1	ENST00000301030.4:c.3046G>T	p.Asp1016Tyr	p.D1016Y	ENST00000301030	NM_001256183.1	1016	Gat/Tat						NEWRECORD																																																																									
YES1	7525	MSKCC	GRCh37	18	756566	756566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	82	425	0	ENST00000314574.4:c.262G>T	p.Gly88Cys	p.G88C	ENST00000314574	NM_005433.3	88	Ggt/Tgt						NEWRECORD																																																																									
INSR	3643	MSKCC	GRCh37	19	7143003	7143003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	78	510	0	ENST00000302850.5:c.2366C>T	p.Pro789Leu	p.P789L	ENST00000302850	NM_000208.2	789	cCc/cTc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41076911	41076911	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	80	685	0	ENST00000373198.4:c.1509C>A	p.Tyr503Ter	p.Y503*	ENST00000373198	NM_133170.3	503	taC/taA						NEWRECORD																																																																									
ZRSR2	8233	MSKCC	GRCh37	X	15840919	15840919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	79	508	0	ENST00000307771.7:c.1003C>T	p.Pro335Ser	p.P335S	ENST00000307771	NM_005089.3	335	Ccc/Tcc						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971132	21971132	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	59	362	0	ENST00000304494.5:c.226del	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	76	Gcc/cc						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971132	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	A			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	59	362	0	ENST00000304494.5:c.225_226delinsT	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	75	ccCGcc/ccTcc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0011282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	273	451	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3779452	3779452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	190	404	1	ENST00000262367.5:c.5596C>T	p.Arg1866Cys	p.R1866C	ENST00000262367	NM_004380.2	1866	Cgc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0015077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	58	672	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	33	638	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157100117	157100119	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs1450867853		P-0013162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	14	50	0	ENST00000346085.5:c.1069_1071del	p.Gly357del	p.G357del	ENST00000346085	NM_020732.3	352	GGC/-						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0013162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	32	577	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			68	381	569	0	ENST00000269305.4:c.700T>A	p.Tyr234Asn	p.Y234N	ENST00000269305	NM_001126112.2	234	Tac/Aac						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49030451	49030451	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			60	226	296	1	ENST00000267163.4:c.1926del	p.Lys643AsnfsTer15	p.K643Nfs*15	ENST00000267163	NM_000321.2	642	ttG/tt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	187	327	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0014457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	172	196	0	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578470	7578482	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGCGGGGGTGT	CGGGCGGGGGTGT	-			P-0014457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	92	398	0	ENST00000269305.4:c.448_460del	p.Thr150AlafsTer16	p.T150Afs*16	ENST00000269305	NM_001126112.2	150	ACACCCCCGCCCGgc/gc						NEWRECORD																																																																									
CDKN1A	1026	MSKCC	GRCh37	6	36651902	36651902	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	203	313	0	ENST00000244741.5:c.25del	p.Arg9ValfsTer22	p.R9Vfs*22	ENST00000244741	NM_000389.4	8	gtC/gt						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117678076	117678076	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs373090808		P-0013648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	274	380	0	ENST00000368508.3:c.3857G>A	p.Arg1286His	p.R1286H	ENST00000368508	NM_002944.2	1286	cGc/cAc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220640	1220640	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	281	546	1	ENST00000326873.7:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000326873	NM_000455.4	220	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578435	7578444	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCTTGTAG	CTGCTTGTAG	-			P-0013648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	211	358	0	ENST00000269305.4:c.486_495del	p.Tyr163HisfsTer4	p.Y163Hfs*4	ENST00000269305	NM_001126112.2	162	atCTACAAGCAG/at						NEWRECORD																																																																									
ZRSR2	8233	MSKCC	GRCh37	X	15840974	15840974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	247	369	0	ENST00000307771.7:c.1058C>A	p.Thr353Asn	p.T353N	ENST00000307771	NM_005089.3	353	aCt/aAt						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39921998	39921998	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0013648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	34	353	0	ENST00000378444.4:c.4173+1G>A		p.X1391_splice	ENST00000378444	NM_001123385.1	1391							NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0013315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3301	215	663	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0013315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	2029	479	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	395	494	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98244270	98244270	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	192	557	0	ENST00000331920.6:c.707G>C	p.Trp236Ser	p.W236S	ENST00000331920	NM_000264.3	236	tGg/tCg						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29665047	29665047	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	94	242	0	ENST00000358273.4:c.6709G>T	p.Ala2237Ser	p.A2237S	ENST00000358273	NM_001042492.2	2237	Gca/Tca						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47041174	47041193	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCAAATCTGAGCTCCAGA	GCTCAAATCTGAGCTCCAGA	-			P-0013315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	254	766	0	ENST00000329236.7:c.1370_1389del	p.Leu457ProfsTer5	p.L457Pfs*5	ENST00000329236	NM_001204466.1	456	gtGCTCAAATCTGAGCTCCAGAgc/gtgc						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66231766	66231767	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0013315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	157	432	0	ENST00000273854.3:c.1933_1934delinsT	p.Pro645Ter	p.P645*	ENST00000273854	NM_004439.5	645	CCa/Ta						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15300226	15300226	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	45	871	0	ENST00000263388.2:c.1050C>A	p.His350Gln	p.H350Q	ENST00000263388	NM_000435.2	350	caC/caA						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	283	408	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123220579	123220579	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1169	249	764	0	ENST00000218089.9:c.3236C>G	p.Thr1079Arg	p.T1079R	ENST00000218089	NM_001042749.1	1079	aCa/aGa						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31368176	31368176	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	373	684	0	ENST00000328111.2:c.47G>T	p.Gly16Val	p.G16V	ENST00000328111	NM_006892.3	16	gGg/gTg						NEWRECORD																																																																									
NEGR1	257194	MSKCC	GRCh37	1	72058610	72058610	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	119	749	1	ENST00000357731.5:c.830G>T	p.Ser277Ile	p.S277I	ENST00000357731	NM_173808.2	277	aGc/aTc						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243716193	243716193	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	247	557	0	ENST00000263826.5:c.1001T>A	p.Val334Asp	p.V334D	ENST00000263826	NM_005465.4	334	gTt/gAt						NEWRECORD																																																																									
RAD50	10111	MSKCC	GRCh37	5	131915022	131915022	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	246	358	1	ENST00000265335.6:c.379G>T	p.Val127Phe	p.V127F	ENST00000265335		127	Gtc/Ttc						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81359046	81359046	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	323	596	0	ENST00000222390.5:c.915C>A	p.Cys305Ter	p.C305*	ENST00000222390	NM_000601.4	305	tgC/tgA						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106508370	106508370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	103	173	0	ENST00000359195.3:c.364C>A	p.Leu122Met	p.L122M	ENST00000359195	NM_002649.2	122	Ctg/Atg						NEWRECORD																																																																									
HNF1A	6927	MSKCC	GRCh37	12	121431383	121431383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	86	484	0	ENST00000257555.6:c.587C>T	p.Thr196Ile	p.T196I	ENST00000257555		196	aCc/aTc						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48916734	48916734	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0012913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	394	363	0	ENST00000267163.4:c.265-1G>A		p.X89_splice	ENST00000267163	NM_000321.2	89							NEWRECORD																																																																									
NTRK3	4916	MSKCC	GRCh37	15	88476309	88476309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	40	535	0	ENST00000360948.2:c.1823G>T	p.Gly608Val	p.G608V	ENST00000360948	NM_001012338.2	608	gGc/gTc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577555	7577556	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	A			P-0012913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	609	477	1	ENST00000269305.4:c.725_726delinsT	p.Cys242LeufsTer5	p.C242Lfs*5	ENST00000269305	NM_001126112.2	242	tGC/tT						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157522598	157522598	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	293	365	2	ENST00000346085.5:c.4870C>T	p.Arg1624Ter	p.R1624*	ENST00000346085	NM_020732.3	1624	Cga/Tga						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106509033	106509033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014312-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			622	39	762	1	ENST00000359195.3:c.1027G>A	p.Gly343Ser	p.G343S	ENST00000359195	NM_002649.2	343	Ggc/Agc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014285-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			583	94	624	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16255086	16255086	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014285-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			772	112	595	1	ENST00000375759.3:c.2351G>T	p.Arg784Leu	p.R784L	ENST00000375759	NM_015001.2	784	cGc/cTc						NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56862971	56862971	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014285-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			715	141	611	0	ENST00000308159.5:c.877G>T	p.Val293Phe	p.V293F	ENST00000308159	NM_014669.4	293	Gtt/Ttt						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67654676	67654676	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014285-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			744	167	669	0	ENST00000264010.4:c.1163G>T	p.Ser388Ile	p.S388I	ENST00000264010	NM_006565.3	388	aGc/aTc						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48954321	48954321	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	18	268	0	ENST00000267163.4:c.1446del	p.His483IlefsTer12	p.H483Ifs*12	ENST00000267163	NM_000321.2	481	aTt/at						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89624259	89624260	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0014395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	85	371	0	ENST00000371953.3:c.34_35del	p.Asn12GlnfsTer31	p.N12Qfs*31	ENST00000371953	NM_000314.4	11	agAAac/agac						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89259629	89259629	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	67	353	1	ENST00000336596.2:c.773C>A	p.Ser258Tyr	p.S258Y	ENST00000336596	NM_005233.5	258	tCc/tAc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	116	450	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	73	350	0				ENST00000310581	NM_198253.2								NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	78	632	0	ENST00000326873.7:c.580G>A	p.Asp194Asn	p.D194N	ENST00000326873	NM_000455.4	194	Gac/Aac						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9520208	9520208	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	72	529	0	ENST00000353224.5:c.2061G>C	p.Gln687His	p.Q687H	ENST00000353224	NM_177990.2	687	caG/caC						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0014485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	75	223	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120466413	120466413	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	203	512	0	ENST00000256646.2:c.4706T>C	p.Leu1569Pro	p.L1569P	ENST00000256646	NM_024408.3	1569	cTg/cCg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0012439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	126	495	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42041397	42041397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1435	205	887	1	ENST00000219905.7:c.5592G>A	p.Met1864Ile	p.M1864I	ENST00000219905	NM_001164273.1	1864	atG/atA						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151945373	151945373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	28	163	0	ENST00000262189.6:c.2146G>A	p.Val716Ile	p.V716I	ENST00000262189	NM_170606.2	716	Gtt/Att						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87563401	87563401	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	46	391	0	ENST00000277120.3:c.1789G>T	p.Ala597Ser	p.A597S	ENST00000277120		597	Gca/Tca						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42042733	42042733	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1126	135	875	0	ENST00000219905.7:c.6928G>C	p.Glu2310Gln	p.E2310Q	ENST00000219905	NM_001164273.1	2310	Gag/Cag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	196	334	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	47	274	1	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123182858	123182858	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	54	182	0	ENST00000218089.9:c.823C>T	p.Gln275Ter	p.Q275*	ENST00000218089	NM_001042749.1	275	Cag/Tag						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29448419	29448419	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140733978		P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	65	551	2	ENST00000389048.3:c.3080C>T	p.Pro1027Leu	p.P1027L	ENST00000389048	NM_004304.4	1027	cCg/cTg						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134884839	134884839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	47	440	0	ENST00000398015.3:c.1615C>A	p.Leu539Met	p.L539M	ENST00000398015	NM_004441.4	539	Ctg/Atg						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55603348	55603348	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	93	386	0	ENST00000288135.5:c.2704A>G	p.Ile902Val	p.I902V	ENST00000288135	NM_000222.2	902	Ata/Gta						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66467778	66467778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	36	364	0	ENST00000273854.3:c.491G>A	p.Arg164Lys	p.R164K	ENST00000273854	NM_004439.5	164	aGa/aAa						NEWRECORD																																																																									
FGF4	2249	MSKCC	GRCh37	11	69588870	69588870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	182	424	0	ENST00000168712.1:c.366G>T	p.Glu122Asp	p.E122D	ENST00000168712	NM_002007.2	122	gaG/gaT						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108205781	108205781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	153	311	0	ENST00000278616.4:c.8096C>T	p.Pro2699Leu	p.P2699L	ENST00000278616	NM_000051.3	2699	cCa/cTa						NEWRECORD																																																																									
CDK8	1024	MSKCC	GRCh37	13	26978105	26978105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	58	556	0	ENST00000381527.3:c.1282C>T	p.His428Tyr	p.H428Y	ENST00000381527	NM_001260.1	428	Cat/Tat						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9862854	9862854	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	54	407	0	ENST00000330684.3:c.2449A>G	p.Met817Val	p.M817V	ENST00000330684	NM_001134407.1	817	Atg/Gtg						NEWRECORD																																																																									
CALR	811	MSKCC	GRCh37	19	13054549	13054549	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	98	741	1	ENST00000316448.5:c.1076A>T	p.Asp359Val	p.D359V	ENST00000316448	NM_004343.3	359	gAc/gTc						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41513417	41513417	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	60	478	2	ENST00000263253.7:c.321G>T	p.Gln107His	p.Q107H	ENST00000263253	NM_001429.3	107	caG/caT						NEWRECORD																																																																									
RPTOR	57521	MSKCC	GRCh37	17	78867528	78867534	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCCGG	CCCCCGG	-			P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	149	361	1	ENST00000306801.3:c.2264_2270del	p.Ser755Ter	p.S755*	ENST00000306801	NM_020761.2	755	tCCCCCGGa/ta						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72831465	72831465	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	637	934	1	ENST00000268489.5:c.5116del	p.Glu1706SerfsTer13	p.E1706Sfs*13	ENST00000268489	NM_006885.3	1706	Gag/ag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578234	7578234	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0014376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	264	695	0	ENST00000269305.4:c.615T>A	p.Tyr205Ter	p.Y205*	ENST00000269305	NM_001126112.2	205	taT/taA						NEWRECORD																																																																									
HLA-A	3105	MSKCC	GRCh37	6	29913035	29913035	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	139	583	0	ENST00000376809.5:c.1070A>G	p.Asp357Gly	p.D357G	ENST00000376809	NM_002116.7	357	gAt/gGt						NEWRECORD																																																																									
ERG	2078	MSKCC	GRCh37	21	39817469	39817469	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	92	555	0	ENST00000288319.7:c.94G>C	p.Glu32Gln	p.E32Q	ENST00000288319	NM_182918.3	32	Gag/Cag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0013429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1142	245	895	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt						NEWRECORD																																																																									
MDM4	4194	MSKCC	GRCh37	1	204499942	204499942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	74	490	0	ENST00000367182.3:c.284C>A	p.Pro95Gln	p.P95Q	ENST00000367182	NM_001278516.1	95	cCa/cAa						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29519831	29519831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	203	660	1	ENST00000389048.3:c.1740G>T	p.Met580Ile	p.M580I	ENST00000389048	NM_004304.4	580	atG/atT						NEWRECORD																																																																									
RAF1	5894	MSKCC	GRCh37	3	12627235	12627235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	88	594	0	ENST00000251849.4:c.1481C>T	p.Ser494Leu	p.S494L	ENST00000251849	NM_002880.3	494	tCa/tTa						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2969655	2969655	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1109	116	704	0	ENST00000396946.4:c.1624C>G	p.Leu542Val	p.L542V	ENST00000396946	NM_032415.4	542	Ctg/Gtg						NEWRECORD																																																																									
DIS3	22894	MSKCC	GRCh37	13	73336145	73336145	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	80	592	0	ENST00000377767.4:c.2258A>G	p.Tyr753Cys	p.Y753C	ENST00000377767	NM_014953.3	753	tAc/tGc						NEWRECORD																																																																									
RAD51B	5890	MSKCC	GRCh37	14	68331857	68331857	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0013429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	76	519	1	ENST00000487270.1:c.452+1G>A		p.X151_splice	ENST00000487270	NM_133509.3	151							NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48026792	48026793	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0013429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	151	497	0	ENST00000234420.5:c.1675_1676del	p.Cys559LeufsTer3	p.C559Lfs*3	ENST00000234420	NM_000179.2	557	gGT/g						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29653046	29653047	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0013429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	316	659	2	ENST00000358273.4:c.5045_5046del	p.Cys1682Ter	p.C1682*	ENST00000358273	NM_001042492.2	1682	TGt/t						NEWRECORD																																																																									
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	191	760	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11132617	11132617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	244	769	6	ENST00000344626.4:c.2833G>A	p.Ala945Thr	p.A945T	ENST00000344626	NM_003072.3	945	Gca/Aca						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27100913	27100913	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	160	562	2	ENST00000324856.7:c.4195C>T	p.Gln1399Ter	p.Q1399*	ENST00000324856	NM_006015.4	1399	Cag/Tag						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49415901	49415902	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0014931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	154	443	0	ENST00000301067.7:c.16445_16446del	p.Val5482GlyfsTer7	p.V5482Gfs*7	ENST00000301067	NM_003482.3	5482	gTG/g						NEWRECORD																																																																									
SESN1	27244	MSKCC	GRCh37	6	109322498	109322498	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	212	573	0	ENST00000436639.2:c.539G>T	p.Gly180Val	p.G180V	ENST00000436639	NM_014454.2	180	gGa/gTa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178947852	178947852	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	356	565	0	ENST00000263967.3:c.2727C>G	p.Phe909Leu	p.F909L	ENST00000263967	NM_006218.2	909	ttC/ttG						NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128850212	128850212	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	329	506	0	ENST00000249373.3:c.1475C>G	p.Ala492Gly	p.A492G	ENST00000249373	NM_005631.4	492	gCc/gGc						NEWRECORD																																																																									
RPS6KB2	6199	MSKCC	GRCh37	11	67196062	67196062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	104	404	0	ENST00000312629.5:c.46G>A	p.Glu16Lys	p.E16K	ENST00000312629	NM_003952.2	16	Gag/Aag						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	416164	416164	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	413	621	0	ENST00000399788.2:c.4022A>T	p.Glu1341Val	p.E1341V	ENST00000399788	NM_001042603.1	1341	gAa/gTa						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49437421	49437421	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	352	500	0	ENST00000301067.7:c.5464A>G	p.Lys1822Glu	p.K1822E	ENST00000301067	NM_003482.3	1822	Aaa/Gaa						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68845712	68845815	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AACAGGAACACAGGAGTCATCAGTGTGGTCACCACTGGGCTGGACCGAGAGGTCAGGGGTCAGGAGGATCCAGAGGGTGTGGAGGACAAATGTGTATTAGCTCA	AACAGGAACACAGGAGTCATCAGTGTGGTCACCACTGGGCTGGACCGAGAGGTCAGGGGTCAGGAGGATCCAGAGGGTGTGGAGGACAAATGTGTATTAGCTCA	-			P-0010110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	534	590	0	ENST00000261769.5:c.959_1008+54del		p.X320_splice	ENST00000261769	NM_004360.3	320							NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	162206790	162206813	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CATGCTAGACTTACCCACACAAGG	CATGCTAGACTTACCCACACAAGG	-			P-0010110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	66	374	0	ENST00000366898.1:c.862_871+14del		p.X288_splice	ENST00000366898	NM_004562.2	288							NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0012894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	40	206	0	ENST00000288602.6:c.1742A>T	p.Asn581Ile	p.N581I	ENST00000288602	NM_004333.4	581	aAt/aTt						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2108872	2108872	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0012894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	133	515	0	ENST00000219476.3:c.973C>T	p.Gln325Ter	p.Q325*	ENST00000219476	NM_000548.3	325	Cag/Tag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	201	474	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0014480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	129	439	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa						NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106193884	106193884	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	122	388	0	ENST00000380013.4:c.4346C>A	p.Ser1449Tyr	p.S1449Y	ENST00000380013	NM_001127208.2	1449	tCt/tAt						NEWRECORD																																																																									
AGO2	27161	MSKCC	GRCh37	8	141551295	141551295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	259	739	0	ENST00000220592.5:c.2002C>T	p.Arg668Cys	p.R668C	ENST00000220592	NM_012154.3	668	Cgc/Tgc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	30	478	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913500		P-0014936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	28	230	0	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061204	38061204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	72	409	1	ENST00000250448.2:c.785G>A	p.Arg262His	p.R262H	ENST00000250448	NM_004496.3	262	cGc/cAc						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115722	8115724	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0014936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	42	426	0	ENST00000346208.3:c.1072_1074del	p.Lys358del	p.K358del	ENST00000346208		356	atGAAg/atg						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56168468	56168468	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0014936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	38	172	0	ENST00000399503.3:c.1424G>A	p.Trp475Ter	p.W475*	ENST00000399503	NM_005921.1	475	tGg/tAg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0014187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	184	621	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0012623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	709	419	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0012623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	408	387	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0012623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	192	218	1	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	84	482	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	143	482	0	ENST00000171111.5:c.959G>A	p.Arg320Gln	p.R320Q	ENST00000171111	NM_203500.1	320	cGg/cAg						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157100117	157100119	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs1450867853		P-0012458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			60	11	35	0	ENST00000346085.5:c.1069_1071del	p.Gly357del	p.G357del	ENST00000346085	NM_020732.3	352	GGC/-						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220482	1220482	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	116	568	0	ENST00000326873.7:c.575T>A	p.Ile192Asn	p.I192N	ENST00000326873	NM_000455.4	192	aTc/aAc						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242482	+	protein_altering_variant	In_Frame_Del	DEL	GGAATTAAGAGAAGCAAC	GGAATTAAGAGAAGCAAC	AAT			P-0012098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	205	430	0	ENST00000275493.2:c.2235_2252delinsAAT	p.Glu746_Thr751delinsIle	p.E746_T751delinsI	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCAACa/aaAATa						NEWRECORD																																																																									
RIT1	6016	MSKCC	GRCh37	1	155880531	155880531	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	485	766	2	ENST00000368323.3:c.22G>C	p.Val8Leu	p.V8L	ENST00000368323	NM_006912.5	8	Gtt/Ctt						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717709	89717713	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCG	AGCCG	-			P-0014685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	255	581	0	ENST00000371953.3:c.734_738del	p.Gln245LeufsTer6	p.Q245Lfs*6	ENST00000371953	NM_000314.4	245	cAGCCG/c						NEWRECORD																																																																									
IGF1R	3480	MSKCC	GRCh37	15	99251067	99251067	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	258	669	0	ENST00000268035.6:c.371A>G	p.Asn124Ser	p.N124S	ENST00000268035	NM_000875.3	124	aAt/aGt						NEWRECORD																																																																									
INPPL1	3636	MSKCC	GRCh37	11	71943375	71943393	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCTCGGTGAGGGGGCGCC	GGCTCGGTGAGGGGGCGCC	A			P-0014685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	175	636	1	ENST00000298229.2:c.1707_1712+13delinsA		p.X569_splice	ENST00000298229	NM_001567.3	569							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0013965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	149	801	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27087388	27087397	+	frameshift_variant	Frame_Shift_Del	DEL	AGGAGCTCTG	AGGAGCTCTG	-			P-0013965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	114	813	0	ENST00000324856.7:c.1964_1973del	p.Gly655ValfsTer4	p.G655Vfs*4	ENST00000324856	NM_006015.4	654	gaAGGAGCTCTG/ga						NEWRECORD																																																																									
PAK1	5058	MSKCC	GRCh37	11	77054967	77054967	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	44	643	0	ENST00000356341.3:c.895A>C	p.Lys299Gln	p.K299Q	ENST00000356341	NM_002576.4	299	Aag/Cag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175213	112175213	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	43	412	0	ENST00000257430.4:c.3922A>G	p.Lys1308Glu	p.K1308E	ENST00000257430	NM_000038.5	1308	Aaa/Gaa						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116340072	116340072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	29	465	0	ENST00000397752.3:c.934G>A	p.Glu312Lys	p.E312K	ENST00000397752	NM_000245.2	312	Gaa/Aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			58	216	443	0	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	43	264	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0013760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	197	657	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0013760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	238	473	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0013760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	119	476	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	92	607	1	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55976872	55976872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	102	572	1	ENST00000263923.4:c.1040G>A	p.Arg347His	p.R347H	ENST00000263923	NM_002253.2	347	cGt/cAt						NEWRECORD																																																																									
ERG	2078	MSKCC	GRCh37	21	39817489	39817489	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763409220		P-0013760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1100	125	617	0	ENST00000288319.7:c.74C>T	p.Thr25Met	p.T25M	ENST00000288319	NM_182918.3	25	aCg/aTg						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32178669	32178669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	178	601	0	ENST00000375023.3:c.2725G>A	p.Asp909Asn	p.D909N	ENST00000375023	NM_004557.3	909	Gac/Aac						NEWRECORD																																																																									
IKBKE	9641	MSKCC	GRCh37	1	206652336	206652336	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149219314		P-0013760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	98	546	1	ENST00000367120.3:c.1043G>A	p.Arg348Gln	p.R348Q	ENST00000367120	NM_014002.3	348	cGa/cAa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175748	112175754	+	frameshift_variant	Frame_Shift_Del	DEL	ATACTTT	ATACTTT	-			P-0013760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	67	418	0	ENST00000257430.4:c.4459_4465del	p.Thr1487TyrfsTer18	p.T1487Yfs*18	ENST00000257430	NM_000038.5	1486	gATACTTTa/ga						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	149983307	149983307	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	88	442	0	ENST00000253339.5:c.2951T>G	p.Leu984Arg	p.L984R	ENST00000253339		984	cTt/cGt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0010269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	21	606	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0012079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	94	484	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
ARID2	196528	MSKCC	GRCh37	12	46245972	46245972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	88	452	0	ENST00000334344.6:c.4066C>A	p.Pro1356Thr	p.P1356T	ENST00000334344	NM_152641.2	1356	Ccg/Acg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	82	480	0	ENST00000269305.4:c.395A>T	p.Lys132Met	p.K132M	ENST00000269305	NM_001126112.2	132	aAg/aTg						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30672932	30672932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	262	906	0	ENST00000376406.3:c.4028C>T	p.Thr1343Ile	p.T1343I	ENST00000376406	NM_014641.2	1343	aCc/aTc						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89816231	89816231	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	53	715	0	ENST00000389301.3:c.3146T>C	p.Phe1049Ser	p.F1049S	ENST00000389301	NM_000135.2	1049	tTt/tCt						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15973634	15973634	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	90	549	0	ENST00000268712.3:c.4358G>C	p.Ser1453Thr	p.S1453T	ENST00000268712	NM_006311.3	1453	aGc/aCc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0010960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	289	566	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	163	387	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45423040	45423040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	258	606	0	ENST00000262160.6:c.88G>A	p.Gly30Arg	p.G30R	ENST00000262160	NM_005901.5	30	Gga/Aga						NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1290	336	802	2	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212426806	212426806	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	62	293	0	ENST00000342788.4:c.2309T>A	p.Leu770Gln	p.L770Q	ENST00000342788	NM_005235.2	770	cTg/cAg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173926	112173926	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	114	320	0	ENST00000257430.4:c.2635C>T	p.Gln879Ter	p.Q879*	ENST00000257430	NM_000038.5	879	Cag/Tag						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153332805	153332805	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	133	644	1	ENST00000281708.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000281708	NM_033632.3	51	Gag/Tag						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149512406	149512406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201250234		P-0010960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	98	461	0	ENST00000261799.4:c.1034C>T	p.Pro345Leu	p.P345L	ENST00000261799	NM_002609.3	345	cCg/cTg						NEWRECORD																																																																									
EZH2	2146	MSKCC	GRCh37	7	148514406	148514406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1255	186	696	1	ENST00000320356.2:c.1318G>A	p.Ala440Thr	p.A440T	ENST00000320356	NM_004456.4	440	Gct/Act						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153250914	153250916	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0010960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	141	407	0	ENST00000281708.4:c.1144_1146del	p.His382del	p.H382del	ENST00000281708	NM_033632.3	382	CAT/-						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175754	112175755	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0010960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	71	341	0	ENST00000257430.4:c.4464_4465del	p.Leu1488PhefsTer25	p.L1488Ffs*25	ENST00000257430	NM_000038.5	1488	tTA/t						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	413	316	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0011135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	76	89	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578208	7578219	+	inframe_deletion	In_Frame_Del	DEL	TGTCGAAAAGTG	TGTCGAAAAGTG	-			P-0011135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	196	452	0	ENST00000269305.4:c.630_641del	p.Thr211_His214del	p.T211_H214del	ENST00000269305	NM_001126112.2	210	aaCACTTTTCGACAt/aat						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0012001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	260	448	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	137	435	0	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602923	10602923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	138	435	0	ENST00000171111.5:c.655G>A	p.Glu219Lys	p.E219K	ENST00000171111	NM_203500.1	219	Gag/Aag						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52651331	52651331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1208	155	535	0	ENST00000394830.3:c.1765G>A	p.Asp589Asn	p.D589N	ENST00000394830	NM_018313.4	589	Gac/Aac						NEWRECORD																																																																									
ATR	545	MSKCC	GRCh37	3	142232402	142232402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	111	412	0	ENST00000350721.4:c.4582C>G	p.Leu1528Val	p.L1528V	ENST00000350721	NM_001184.3	1528	Ctt/Gtt						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117724308	117724308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	54	356	0	ENST00000368508.3:c.571C>T	p.His191Tyr	p.H191Y	ENST00000368508	NM_002944.2	191	Cat/Tat						NEWRECORD																																																																									
NF2	4771	MSKCC	GRCh37	22	30032739	30032739	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0012001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	121	324	0	ENST00000338641.4:c.115-1G>C		p.X39_splice	ENST00000338641	NM_000268.3	39							NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41551043	41551043	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1479	189	561	0	ENST00000263253.7:c.3187G>T	p.Glu1063Ter	p.E1063*	ENST00000263253	NM_001429.3	1063	Gag/Tag						NEWRECORD																																																																									
TSC1	7248	MSKCC	GRCh37	9	135781328	135781329	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0012001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2081	251	865	0	ENST00000298552.3:c.1636_1637delGA	p.Asp546HisfsTer17	p.D546Hfs*17	ENST00000298552	NM_001162426.1	546	GAc/c						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	201	254	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106523505	106523505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	23	151	0	ENST00000359195.3:c.2657C>T	p.Thr886Met	p.T886M	ENST00000359195	NM_002649.2	886	aCg/aTg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0010326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	321	272	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	73	418	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0012396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	122	894	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	10274042	10274042	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1184494228		P-0012396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	94	657	0	ENST00000330684.3:c.227G>A	p.Arg76His	p.R76H	ENST00000330684	NM_001134407.1	76	cGc/cAc						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692883	89692883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	39	258	0	ENST00000371953.3:c.367C>T	p.His123Tyr	p.H123Y	ENST00000371953	NM_000314.4	123	Cac/Tac						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108216572	108216572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	74	579	0	ENST00000278616.4:c.8521G>A	p.Asp2841Asn	p.D2841N	ENST00000278616	NM_000051.3	2841	Gat/Aat						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21557673	21557673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	53	730	1	ENST00000382592.4:c.2172C>A	p.Asp724Glu	p.D724E	ENST00000382592	NM_014572.2	724	gaC/gaA						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12032510	12032510	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	63	333	1	ENST00000353533.5:c.946C>T	p.Gln316Ter	p.Q316*	ENST00000353533	NM_003010.3	316	Caa/Taa						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5229561	5229561	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	28	203	0	ENST00000357368.4:c.2290G>C	p.Glu764Gln	p.E764Q	ENST00000357368	NM_002850.3	764	Gag/Cag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	168	440	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0012442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	126	641	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0013062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	88	440	2	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc						NEWRECORD																																																																									
NTRK1	4914	MSKCC	GRCh37	1	156834199	156834199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	342	409	0	ENST00000524377.1:c.266G>A	p.Gly89Asp	p.G89D	ENST00000524377	NM_002529.3	89	gGc/gAc						NEWRECORD																																																																									
IL10	3586	MSKCC	GRCh37	1	206942015	206942015	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	169	456	0	ENST00000423557.1:c.503T>C	p.Ile168Thr	p.I168T	ENST00000423557	NM_000572.2	168	aTa/aCa						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21562949	21562949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	121	295	2	ENST00000382592.4:c.970G>A	p.Ala324Thr	p.A324T	ENST00000382592	NM_014572.2	324	Gcg/Acg						NEWRECORD																																																																									
EIF1AX	1964	MSKCC	GRCh37	X	20156723	20156723	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	199	528	0	ENST00000379607.5:c.34A>G	p.Arg12Gly	p.R12G	ENST00000379607	NM_001412.3	12	Aga/Gga						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	76	402	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64573765	64573765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	41	425	1	ENST00000337652.1:c.1003C>T	p.Arg335Cys	p.R335C	ENST00000337652	NM_130803.2	335	Cgc/Tgc						NEWRECORD																																																																									
FGF3	2248	MSKCC	GRCh37	11	69631129	69631129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	112	695	1	ENST00000334134.2:c.283C>T	p.Arg95Trp	p.R95W	ENST00000334134	NM_005247.2	95	Cgg/Tgg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	328	406	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41419986	41419986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	71	543	1	ENST00000373198.4:c.335G>A	p.Arg112His	p.R112H	ENST00000373198	NM_133170.3	112	cGt/cAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0011044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	232	602	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266052	41266052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	116	424	0	ENST00000349496.5:c.49G>T	p.Asp17Tyr	p.D17Y	ENST00000349496	NM_001904.3	17	Gac/Tac						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52438494	52438494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	87	604	0	ENST00000460680.1:c.1225G>C	p.Val409Leu	p.V409L	ENST00000460680	NM_004656.3	409	Gtg/Ctg						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81388082	81388082	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	76	518	0	ENST00000222390.5:c.293G>T	p.Trp98Leu	p.W98L	ENST00000222390	NM_000601.4	98	tGg/tTg						NEWRECORD																																																																									
POLE	5426	MSKCC	GRCh37	12	133226089	133226089	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	44	501	0	ENST00000320574.5:c.3808G>C	p.Val1270Leu	p.V1270L	ENST00000320574	NM_006231.2	1270	Gtc/Ctc						NEWRECORD																																																																									
FANCA	2175	MSKCC	GRCh37	16	89836617	89836617	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	71	409	0	ENST00000389301.3:c.2273T>C	p.Leu758Pro	p.L758P	ENST00000389301	NM_000135.2	758	cTc/cCc						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29556874	29556874	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	73	334	0	ENST00000358273.4:c.2872A>T	p.Thr958Ser	p.T958S	ENST00000358273	NM_001042492.2	958	Act/Tct						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41243776	41243776	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	89	584	0	ENST00000357654.3:c.3772G>T	p.Glu1258Ter	p.E1258*	ENST00000357654	NM_007294.3	1258	Gag/Tag						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32910466	32910503	+	frameshift_variant	Frame_Shift_Del	DEL	CTTAACTAGCTCTTTTGGGACAATTCTGAGGAAATGTT	CTTAACTAGCTCTTTTGGGACAATTCTGAGGAAATGTT	-			P-0011044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1295	134	713	0	ENST00000380152.3:c.1976_2013del	p.Leu659Ter	p.L659*	ENST00000380152		658	tcCTTAACTAGCTCTTTTGGGACAATTCTGAGGAAATGTTct/tcct						NEWRECORD																																																																									
FOXO1	2308	MSKCC	GRCh37	13	41240025	41240061	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCGCACAGCCCCCCGGTGGCGGCCGCGGCGGCCGC	CCCCGCACAGCCCCCCGGTGGCGGCCGCGGCGGCCGC	-			P-0011044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	20	21	0	ENST00000379561.5:c.289_325del	p.Ala97ThrfsTer224	p.A97Tfs*224	ENST00000379561	NM_002015.3	97	GCGGCCGCCGCGGCCGCCACCGGGGGGCTGTGCGGGGac/ac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	241	354	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266107	41266107	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	57	396	0	ENST00000349496.5:c.104T>G	p.Ile35Ser	p.I35S	ENST00000349496	NM_001904.3	35	aTc/aGc						NEWRECORD																																																																									
EIF1AX	1964	MSKCC	GRCh37	X	20159754	20159754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	70	337	0	ENST00000379607.5:c.5C>T	p.Pro2Leu	p.P2L	ENST00000379607	NM_001412.3	2	cCc/cTc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27058075	27058075	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	41	117	0	ENST00000324856.7:c.1783C>T	p.Gln595Ter	p.Q595*	ENST00000324856	NM_006015.4	595	Cag/Tag						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55602890	55602890	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	264	294	2	ENST00000288135.5:c.2600G>T	p.Ser867Ile	p.S867I	ENST00000288135	NM_000222.2	867	aGc/aTc						NEWRECORD																																																																									
ALOX12B	242	MSKCC	GRCh37	17	7977052	7977052	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	80	364	0	ENST00000319144.4:c.1678G>T	p.Val560Leu	p.V560L	ENST00000319144	NM_001139.2	560	Gtg/Ttg						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29667647	29667647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1238	98	419	1	ENST00000358273.4:c.7046G>A	p.Arg2349His	p.R2349H	ENST00000358273	NM_001042492.2	2349	cGt/cAt						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198267388	198267399	+	inframe_deletion	In_Frame_Del	DEL	ACTTCTTGCTTT	ACTTCTTGCTTT	-			P-0010986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1252	87	458	0	ENST00000335508.6:c.1958_1969del	p.Lys653_Ser657delinsThr	p.K653_S657delinsT	ENST00000335508	NM_012433.2	653	aAAAGCAAGAAGTcc/acc						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29490261	29490290	+	inframe_deletion	In_Frame_Del	DEL	GAAATCTGCCATTTTCTTCACACCTGTCGT	GAAATCTGCCATTTTCTTCACACCTGTCGT	-			P-0013280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	71	907	0	ENST00000358273.4:c.349_378del	p.Ile117_Glu126del	p.I117_E126del	ENST00000358273	NM_001042492.2	116	GAAATCTGCCATTTTCTTCACACCTGTCGT/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578499	7578510	+	inframe_deletion	In_Frame_Del	DEL	TGCACAGGGCAG	TGCACAGGGCAG	-			P-0013280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	42	760	0	ENST00000269305.4:c.420_431del	p.Cys141_Gln144del	p.C141_Q144del	ENST00000269305	NM_001126112.2	140	acCTGCCCTGTGCAg/acg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952088	+	missense_variant	Missense_Mutation	ONP	ATCA	ATCA	GTCG			P-0012006-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	121	274	0	ENST00000263967.3:c.3140_3143delinsGTCG	p.His1047_His1048delinsArgArg	p.H1047_H1048delinsRR	ENST00000263967	NM_006218.2	1047	cATCAt/cGTCGt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	56	247	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
FYN	2534	MSKCC	GRCh37	6	112015637	112015637	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1314	71	668	0	ENST00000368678.4:c.1205A>G	p.Lys402Arg	p.K402R	ENST00000368678		402	aAg/aGg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1220706	1220706	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs878853992		P-0010362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	41	257	0	ENST00000326873.7:c.724G>T	p.Gly242Trp	p.G242W	ENST00000326873	NM_000455.4	242	Ggg/Tgg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0010751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	231	439	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0010751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	30	282	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	12	148	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag						NEWRECORD																																																																									
JUN	3725	MSKCC	GRCh37	1	59248514	59248514	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	106	400	0	ENST00000371222.2:c.229G>T	p.Glu77Ter	p.E77*	ENST00000371222	NM_002228.3	77	Gag/Tag						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32911379	32911379	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	54	718	0	ENST00000380152.3:c.2887A>G	p.Ile963Val	p.I963V	ENST00000380152		963	Ata/Gta						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70120351	70120351	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1537	375	853	0	ENST00000245479.2:c.1353C>G	p.Tyr451Ter	p.Y451*	ENST00000245479	NM_000346.3	451	taC/taG						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0010933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	287	250	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	209	391	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0010933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	267	343	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66189908	66189908	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	145	424	0	ENST00000273854.3:c.3038T>G	p.Val1013Gly	p.V1013G	ENST00000273854	NM_004439.5	1013	gTc/gGc						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149512490	149512490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	341	179	0	ENST00000261799.4:c.950G>A	p.Arg317Gln	p.R317Q	ENST00000261799	NM_002609.3	317	cGg/cAg						NEWRECORD																																																																									
CD274	29126	MSKCC	GRCh37	9	5462929	5462929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	62	379	0	ENST00000381577.3:c.490G>C	p.Glu164Gln	p.E164Q	ENST00000381577	NM_014143.3	164	Gaa/Caa						NEWRECORD																																																																									
BCL2L11	10018	MSKCC	GRCh37	2	111921722	111921750	+	frameshift_variant	Frame_Shift_Del	DEL	AATTACCAAGCAGCCGAAGACCACCCACG	AATTACCAAGCAGCCGAAGACCACCCACG	-			P-0010933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	186	471	0	ENST00000393256.3:c.514_542del	p.Tyr172GlyfsTer83	p.Y172Gfs*83	ENST00000393256	NM_006538.4	171	AATTACCAAGCAGCCGAAGACCACCCACGa/a						NEWRECORD																																																																									
CD274	29126	MSKCC	GRCh37	9	5463021	5463035	+	inframe_deletion	In_Frame_Del	DEL	CAGCACACTGAGAAT	CAGCACACTGAGAAT	-			P-0010933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	43	381	0	ENST00000381577.3:c.584_598del	p.Ser195_Ile199del	p.S195_I199del	ENST00000381577	NM_014143.3	194	acCAGCACACTGAGAATc/acc						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0012624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	197	279	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	192	450	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11227497	11227497	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0012624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	222	483	0	ENST00000361445.4:c.4329+2T>A		p.X1443_splice	ENST00000361445	NM_004958.3	1443							NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139390684	139390684	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	40	722	0	ENST00000277541.6:c.7507C>T	p.Gln2503Ter	p.Q2503*	ENST00000277541	NM_017617.3	2503	Cag/Tag						NEWRECORD																																																																									
ID3	3399	MSKCC	GRCh37	1	23885836	23885836	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	59	342	0	ENST00000374561.5:c.82C>G	p.Arg28Gly	p.R28G	ENST00000374561	NM_002167.4	28	Cga/Gga						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120458436	120458436	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	56	448	1	ENST00000256646.2:c.6909delC	p.Ile2304LeufsTer2	p.I2304Lfs*2	ENST00000256646	NM_024408.3	2303	ccC/cc						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106524612	106524612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	33	260	0	ENST00000359195.3:c.2773G>T	p.Val925Leu	p.V925L	ENST00000359195	NM_002649.2	925	Gtg/Ttg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0013899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	131	645	1	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0013899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	163	672	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307							NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43608369	43608369	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1270	82	1236	1	ENST00000355710.3:c.1717G>T	p.Val573Leu	p.V573L	ENST00000355710	NM_020975.4	573	Gtg/Ttg						NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56492817	56492817	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	120	676	0	ENST00000407977.2:c.122del	p.Ser41Ter	p.S41*	ENST00000407977		41	tCa/ta						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39584467	39584467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	59	683	0	ENST00000262039.4:c.1132C>T	p.Arg378Cys	p.R378C	ENST00000262039	NM_002647.2	378	Cgt/Tgt						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116339566	116339566	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35469582		P-0013899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	35	433	0	ENST00000397752.3:c.428G>A	p.Arg143Gln	p.R143Q	ENST00000397752	NM_000245.2	143	cGa/cAa						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0010575-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			305	172	382	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29665752	29665755	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0010575-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			355	238	575	0	ENST00000358273.4:c.6852_6855delTTAC	p.Tyr2285ThrfsTer5	p.Y2285Tfs*5	ENST00000358273	NM_001042492.2	2284	ACTTac/ac						NEWRECORD																																																																									
MAP2K4	6416	MSKCC	GRCh37	17	12016549	12016549	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0010575-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			224	169	386	0	ENST00000353533.5:c.686-1G>T		p.X229_splice	ENST00000353533	NM_003010.3	229							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0013182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	306	761	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81381485	81381485	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	118	918	0	ENST00000222390.5:c.576C>A	p.Ser192Arg	p.S192R	ENST00000222390	NM_000601.4	192	agC/agA						NEWRECORD																																																																									
SOX9	6662	MSKCC	GRCh37	17	70120035	70120035	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	16	53	0	ENST00000245479.2:c.1037C>G	p.Pro346Arg	p.P346R	ENST00000245479	NM_000346.3	346	cCg/cGg						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15289710	15289710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	517	741	0	ENST00000263388.2:c.3761C>A	p.Pro1254Gln	p.P1254Q	ENST00000263388	NM_000435.2	1254	cCa/cAa						NEWRECORD																																																																									
CRLF2	64109	MSKCC	GRCh37	X	1314932	1314932	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0013182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	366	783	0				ENST00000381566									NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	54	463	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11210198	11210198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	97	675	1	ENST00000361445.4:c.4555G>A	p.Ala1519Thr	p.A1519T	ENST00000361445	NM_004958.3	1519	Gct/Act						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47162383	47162388	+	frameshift_variant	Frame_Shift_Del	DEL	CCATCC	CCATCC	AT			P-0013966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	51	412	2	ENST00000409792.3:c.3738_3743delinsAT	p.Asp1247SerfsTer11	p.D1247Sfs*11	ENST00000409792	NM_014159.6	1246	gtGGATGGc/gtATc						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47165164	47165164	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0013966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	68	472	0	ENST00000409792.3:c.962C>G	p.Ser321Ter	p.S321*	ENST00000409792	NM_014159.6	321	tCa/tGa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0014612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	107	852	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
MYCL1	4610	MSKCC	GRCh37	1	40363211	40363211	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	69	755	0	ENST00000397332.2:c.1018A>T	p.Thr340Ser	p.T340S	ENST00000397332	NM_001033082.2	340	Acc/Tcc						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243716140	243716140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	86	940	0	ENST00000263826.5:c.1054G>A	p.Glu352Lys	p.E352K	ENST00000263826	NM_005465.4	352	Gag/Aag						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3900833	3900833	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	79	760	0	ENST00000262367.5:c.263A>C	p.Asn88Thr	p.N88T	ENST00000262367	NM_004380.2	88	aAt/aCt						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47032566	47032566	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	92	510	0	ENST00000329236.7:c.241G>T	p.Glu81Ter	p.E81*	ENST00000329236	NM_001204466.1	81	Gag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0012728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	385	365	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520009		P-0012728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	30	379	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa						NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36938264	36938264	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150616658		P-0012728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	377	891	2	ENST00000361632.4:c.697C>T	p.Arg233Trp	p.R233W	ENST00000361632		233	Cgg/Tgg						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25497944	25497944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	151	358	1	ENST00000264709.3:c.505C>T	p.Arg169Trp	p.R169W	ENST00000264709	NM_175629.2	169	Cgg/Tgg						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151880241	151880241	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0012728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	36	276	0	ENST00000262189.6:c.5083C>A	p.Gln1695Lys	p.Q1695K	ENST00000262189	NM_170606.2	1695	Caa/Aaa						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49437704	49437704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	916	972	1	ENST00000301067.7:c.5266C>T	p.Arg1756Trp	p.R1756W	ENST00000301067	NM_003482.3	1756	Cgg/Tgg						NEWRECORD																																																																									
ERCC4	2072	MSKCC	GRCh37	16	14029258	14029258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	257	550	2	ENST00000311895.7:c.1469G>A	p.Arg490Gln	p.R490Q	ENST00000311895	NM_005236.2	490	cGg/cAg						NEWRECORD																																																																									
MED12	9968	MSKCC	GRCh37	X	70352238	70352238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1270	326	789	0	ENST00000374080.3:c.4265G>A	p.Arg1422His	p.R1422H	ENST00000374080		1422	cGc/cAc						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266065	41266100	+	inframe_deletion	In_Frame_Del	DEL	CTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACT	CTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACT	-			P-0012728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	325	599	0	ENST00000349496.5:c.65_100del	p.Val22_Ser33del	p.V22_S33del	ENST00000349496	NM_001904.3	21	gCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTct/gct						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56171121	56171127	+	frameshift_variant	Frame_Shift_Del	DEL	TGTACGT	TGTACGT	-			P-0012728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	111	360	0	ENST00000399503.3:c.1951_1957del	p.Tyr651LeufsTer3	p.Y651Lfs*3	ENST00000399503	NM_005921.1	650	gTGTACGTt/gt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0010994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	556	593	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89521675	89521675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	239	538	0	ENST00000336596.2:c.2752G>A	p.Asp918Asn	p.D918N	ENST00000336596	NM_005233.5	918	Gac/Aac						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139396503	139396503	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1099	197	683	1	ENST00000277541.6:c.5422G>T	p.Asp1808Tyr	p.D1808Y	ENST00000277541	NM_017617.3	1808	Gac/Tac						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123179144	123179144	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	587	653	1	ENST00000218089.9:c.593A>T	p.Asp198Val	p.D198V	ENST00000218089	NM_001042749.1	198	gAt/gTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	219	393	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	187	242	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg						NEWRECORD																																																																									
SHQ1	55164	MSKCC	GRCh37	3	72890348	72890348	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	115	277	0	ENST00000325599.8:c.334G>T	p.Ala112Ser	p.A112S	ENST00000325599	NM_018130.2	112	Gct/Tct						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89445001	89445001	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	146	409	0	ENST00000336596.2:c.1321C>A	p.Leu441Met	p.L441M	ENST00000336596	NM_005233.5	441	Ctg/Atg						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189587134	189587134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	159	341	0	ENST00000264731.3:c.1151G>A	p.Gly384Asp	p.G384D	ENST00000264731	NM_003722.4	384	gGt/gAt						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180038480	180038480	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	67	273	0	ENST00000261937.6:c.3538-1G>T		p.X1180_splice	ENST00000261937	NM_182925.4	1180							NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	162683669	162683669	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	275	331	0	ENST00000366898.1:c.300G>C	p.Gln100His	p.Q100H	ENST00000366898	NM_004562.2	100	caG/caC						NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81399248	81399248	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	317	338	0	ENST00000222390.5:c.40C>G	p.His14Asp	p.H14D	ENST00000222390	NM_000601.4	14	Cat/Gat						NEWRECORD																																																																									
KLF4	9314	MSKCC	GRCh37	9	110250167	110250167	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	93	207	0	ENST00000374672.4:c.508G>T	p.Gly170Cys	p.G170C	ENST00000374672	NM_004235.4	170	Ggc/Tgc						NEWRECORD																																																																									
AXL	558	MSKCC	GRCh37	19	41737201	41737201	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	328	382	1	ENST00000301178.4:c.781C>T	p.Gln261Ter	p.Q261*	ENST00000301178	NM_021913.4	261	Cag/Tag						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63409815	63409815	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	154	431	0	ENST00000330258.3:c.3352G>C	p.Ala1118Pro	p.A1118P	ENST00000330258	NM_152424.3	1118	Gcc/Ccc						NEWRECORD																																																																									
GPS2	2874	MSKCC	GRCh37	17	7217651	7217651	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	74	523	0	ENST00000380728.2:c.276del	p.Val93PhefsTer16	p.V93Ffs*16	ENST00000380728		92	aaA/aa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8340439	8340439	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	209	343	0	ENST00000356435.5:c.5157del	p.Leu1721TrpfsTer19	p.L1721Wfs*19	ENST00000356435		1719	ggG/gg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0012837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	90	454	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	338190	338190	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	13	851	1	ENST00000262320.3:c.2521C>T	p.Arg841Ter	p.R841*	ENST00000262320	NM_003502.3	841	Cga/Tga						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17945970	17945970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	11	824	1	ENST00000458235.1:c.1969C>T	p.Arg657Trp	p.R657W	ENST00000458235	NM_000215.3	657	Cgg/Tgg						NEWRECORD																																																																									
ETV6	2120	MSKCC	GRCh37	12	12037394	12037394	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	58	678	0	ENST00000396373.4:c.1025G>A	p.Trp342Ter	p.W342*	ENST00000396373	NM_001987.4	342	tGg/tAg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	77	488	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
PIK3CD	5293	MSKCC	GRCh37	1	9770524	9770524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	63	611	1	ENST00000377346.4:c.11G>T	p.Gly4Val	p.G4V	ENST00000377346	NM_005026.3	4	gGg/gTg						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	30143171	30143171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	26	359	0	ENST00000389048.3:c.355G>A	p.Glu119Lys	p.E119K	ENST00000389048	NM_004304.4	119	Gag/Aag						NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149447873	149447873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	68	728	1	ENST00000286301.3:c.1531G>T	p.Asp511Tyr	p.D511Y	ENST00000286301	NM_005211.3	511	Gat/Tat						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28597539	28597539	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	91	699	0	ENST00000241453.7:c.2366T>C	p.Leu789Pro	p.L789P	ENST00000241453	NM_004119.2	789	cTt/cCt						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110434777	110434777	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	68	489	0	ENST00000375856.3:c.3624G>T	p.Gln1208His	p.Q1208H	ENST00000375856	NM_003749.2	1208	caG/caT						NEWRECORD																																																																									
PLCG2	5336	MSKCC	GRCh37	16	81934260	81934260	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	91	699	0	ENST00000359376.3:c.1237C>A	p.Gln413Lys	p.Q413K	ENST00000359376	NM_002661.3	413	Caa/Aaa						NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115112162	115112163	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0013233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	58	502	0	ENST00000257566.3:c.1577_1578delinsAT	p.Ala526Asp	p.A526D	ENST00000257566	NM_016569.3	526	gCC/gAT						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	268	360	1	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48941741	48941741	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0010849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	61	230	0	ENST00000267163.4:c.1049+2T>C		p.X350_splice	ENST00000267163	NM_000321.2	350							NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41523605	41523605	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	203	385	0	ENST00000263253.7:c.1021C>T	p.Gln341Ter	p.Q341*	ENST00000263253	NM_001429.3	341	Cag/Tag						NEWRECORD																																																																									
BRIP1	83990	MSKCC	GRCh37	17	59761014	59761017	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1082	392	727	0	ENST00000259008.2:c.3390_3393delCTAT	p.Tyr1131LeufsTer18	p.Y1131Lfs*18	ENST00000259008	NM_032043.2	1130	atCTAT/at						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	219	750	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa						NEWRECORD																																																																									
SMAD2	4087	MSKCC	GRCh37	18	45375002	45375002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	283	514	0	ENST00000262160.6:c.841G>A	p.Glu281Lys	p.E281K	ENST00000262160	NM_005901.5	281	Gaa/Aaa						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180043904	180043904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56082504		P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	495	888	3	ENST00000261937.6:c.3092G>A	p.Arg1031Gln	p.R1031Q	ENST00000261937	NM_182925.4	1031	cGa/cAa						NEWRECORD																																																																									
EPHA7	2045	MSKCC	GRCh37	6	94120666	94120666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1211	628	1149	0	ENST00000369303.4:c.385G>A	p.Glu129Lys	p.E129K	ENST00000369303	NM_004440.3	129	Gaa/Aaa						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41572904	41572904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	455	674	0	ENST00000263253.7:c.5189C>T	p.Ser1730Phe	p.S1730F	ENST00000263253	NM_001429.3	1730	tCt/tTt						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56495393	56495393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	472	815	3	ENST00000267101.3:c.3583G>A	p.Glu1195Lys	p.E1195K	ENST00000267101	NM_001982.3	1195	Gag/Aag						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56495402	56495402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	463	815	2	ENST00000267101.3:c.3592G>A	p.Glu1198Lys	p.E1198K	ENST00000267101	NM_001982.3	1198	Gaa/Aaa						NEWRECORD																																																																									
DICER1	23405	MSKCC	GRCh37	14	95562856	95562856	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	125	410	0	ENST00000343455.3:c.4401C>G	p.Ile1467Met	p.I1467M	ENST00000343455	NM_177438.2	1467	atC/atG						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23646702	23646702	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	168	641	0	ENST00000261584.4:c.1165C>G	p.Leu389Val	p.L389V	ENST00000261584	NM_024675.3	389	Ctt/Gtt						NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42796511	42796511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	177	533	0	ENST00000575354.2:c.3068C>T	p.Ser1023Phe	p.S1023F	ENST00000575354	NM_015125.3	1023	tCc/tTc						NEWRECORD																																																																									
MYD88	4615	MSKCC	GRCh37	3	38182057	38182057	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	277	482	0	ENST00000396334.3:c.681G>C	p.Lys227Asn	p.K227N	ENST00000396334	NM_002468.4	227	aaG/aaC						NEWRECORD																																																																									
SHQ1	55164	MSKCC	GRCh37	3	72890276	72890276	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	172	711	2	ENST00000325599.8:c.406G>T	p.Glu136Ter	p.E136*	ENST00000325599	NM_018130.2	136	Gag/Tag						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178951979	178951979	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	344	571	0	ENST00000263967.3:c.3034G>C	p.Glu1012Gln	p.E1012Q	ENST00000263967	NM_006218.2	1012	Gaa/Caa						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30680869	30680869	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1620	172	1135	0	ENST00000376406.3:c.850C>G	p.Pro284Ala	p.P284A	ENST00000376406	NM_014641.2	284	Cca/Gca						NEWRECORD																																																																									
PMS2	5395	MSKCC	GRCh37	7	6031610	6031610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	80	259	0	ENST00000265849.7:c.982G>A	p.Asp328Asn	p.D328N	ENST00000265849	NM_000535.5	328	Gat/Aat						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579536	7579536	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	120	395	2	ENST00000269305.4:c.151del	p.Glu51AsnfsTer72	p.E51Nfs*72	ENST00000269305	NM_001126112.2	51	Gaa/aa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0012089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	439	304	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0010018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	585	469	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs387906846		P-0010018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	120	276	0	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157222660	157222660	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0010018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	117	211	0	ENST00000346085.5:c.1926+1G>A		p.X642_splice	ENST00000346085	NM_020732.3	642							NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18793466	18793466	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193113798		P-0010018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	255	468	1	ENST00000266497.5:c.4163C>T	p.Thr1388Met	p.T1388M	ENST00000266497		1388	aCg/aTg						NEWRECORD																																																																									
IGF1	3479	MSKCC	GRCh37	12	102813345	102813345	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	503	409	0	ENST00000307046.8:c.344C>A	p.Ala115Asp	p.A115D	ENST00000307046	NM_001111285.1	115	gCc/gAc						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1223061	1223061	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782267		P-0010018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	189	372	0	ENST00000326873.7:c.998G>A	p.Arg333His	p.R333H	ENST00000326873	NM_000455.4	333	cGc/cAc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0010781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	90	460	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0010781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	51	195	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga						NEWRECORD																																																																									
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0010781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1173	157	629	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40743865	40743865	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758531464		P-0010781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	87	461	1	ENST00000373198.4:c.3130G>A	p.Val1044Ile	p.V1044I	ENST00000373198	NM_133170.3	1044	Gtc/Atc						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41574432	41574448	+	frameshift_variant	Frame_Shift_Del	DEL	GGGACAGATAGGCCAGC	GGGACAGATAGGCCAGC	T			P-0010781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	84	446	0	ENST00000263253.7:c.6717_6733delinsT	p.Met2239IlefsTer35	p.M2239Ifs*35	ENST00000263253	NM_001429.3	2239	atGGGACAGATAGGCCAGCtt/atTtt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	379	436	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243809299	243809299	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	249	640	0	ENST00000263826.5:c.325C>A	p.Leu109Met	p.L109M	ENST00000263826	NM_005465.4	109	Ctg/Atg						NEWRECORD																																																																									
CTCF	10664	MSKCC	GRCh37	16	67662366	67662366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	304	644	0	ENST00000264010.4:c.1612C>G	p.Leu538Val	p.L538V	ENST00000264010	NM_006565.3	538	Ctc/Gtc						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30732950	30732950	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	179	423	0	ENST00000359013.4:c.1638G>A	p.Trp546Ter	p.W546*	ENST00000359013	NM_001024847.2	546	tgG/tgA						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52682409	52682409	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	287	660	0	ENST00000394830.3:c.764T>C	p.Leu255Pro	p.L255P	ENST00000394830	NM_018313.4	255	cTc/cCc						NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55592079	55592079	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200518498		P-0014144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	273	668	1	ENST00000288135.5:c.1403C>T	p.Pro468Leu	p.P468L	ENST00000288135	NM_000222.2	468	cCg/cTg						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157528478	157528478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	171	416	0	ENST00000346085.5:c.6203C>T	p.Pro2068Leu	p.P2068L	ENST00000346085	NM_020732.3	2068	cCa/cTa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	64	369	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0010832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	74	502	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578213	7578213	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	117	685	0	ENST00000269305.4:c.636delT	p.Arg213AspfsTer34	p.R213Dfs*34	ENST00000269305	NM_001126112.2	212	ttT/tt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112154824	112154824	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	80	501	0	ENST00000257430.4:c.1095A>T	p.Lys365Asn	p.K365N	ENST00000257430	NM_000038.5	365	aaA/aaT						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5212130	5212130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	114	658	1	ENST00000357368.4:c.4901C>T	p.Thr1634Met	p.T1634M	ENST00000357368	NM_002850.3	1634	aCg/aTg						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17949188	17949188	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	91	618	0	ENST00000458235.1:c.1453C>A	p.Leu485Met	p.L485M	ENST00000458235	NM_000215.3	485	Ctg/Atg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0011074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	314	491	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115258744	115258744	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434596		P-0011074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	278	479	0	ENST00000369535.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000369535	NM_002524.4	13	gGt/gAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173975	112173975	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0011074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	107	178	0	ENST00000257430.4:c.2684C>G	p.Ser895Ter	p.S895*	ENST00000257430	NM_000038.5	895	tCa/tGa						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63411276	63411276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	782	382	0	ENST00000330258.3:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000330258	NM_152424.3	631	Cga/Tga						NEWRECORD																																																																									
ARAF	369	MSKCC	GRCh37	X	47426645	47426645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	816	401	1	ENST00000377045.4:c.890G>A	p.Arg297Gln	p.R297Q	ENST00000377045	NM_001654.4	297	cGg/cAg						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176636739	176636739	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	158	264	0	ENST00000439151.2:c.1339A>C	p.Ile447Leu	p.I447L	ENST00000439151	NM_022455.4	447	Atc/Ctc						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56486845	56486845	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	276	475	0	ENST00000267101.3:c.1259G>C	p.Gly420Ala	p.G420A	ENST00000267101	NM_001982.3	420	gGc/gCc						NEWRECORD																																																																									
RAD51D	5892	MSKCC	GRCh37	17	33428258	33428258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	427	684	0	ENST00000335858.7:c.529G>A	p.Gly177Ser	p.G177S	ENST00000335858	NM_133629.2	177	Ggc/Agc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	197	415	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0012965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	33	222	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0012965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	64	308	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106509769	106509769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	97	468	0	ENST00000359195.3:c.1763C>T	p.Ala588Val	p.A588V	ENST00000359195	NM_002649.2	588	gCa/gTa						NEWRECORD																																																																									
RPTOR	57521	MSKCC	GRCh37	17	78857252	78857252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	79	386	1	ENST00000306801.3:c.1618G>A	p.Ala540Thr	p.A540T	ENST00000306801	NM_020761.2	540	Gcc/Acc						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175750	112175750	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	107	275	0	ENST00000257430.4:c.4459del	p.Thr1487LeufsTer20	p.T1487Lfs*20	ENST00000257430	NM_000038.5	1487	Act/ct						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005937-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			809	97	380	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198266709	198266709	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0005937-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			709	85	403	0	ENST00000335508.6:c.2223G>T	p.Lys741Asn	p.K741N	ENST00000335508	NM_012433.2	741	aaG/aaT						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1271256	1271256	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005937-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			594	65	333	0	ENST00000310581.5:c.2446C>A	p.His816Asn	p.H816N	ENST00000310581	NM_198253.2	816	Cac/Aac						NEWRECORD																																																																									
PDGFRB	5159	MSKCC	GRCh37	5	149497292	149497292	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005937-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			873	85	490	0	ENST00000261799.4:c.3026A>C	p.Tyr1009Ser	p.Y1009S	ENST00000261799	NM_002609.3	1009	tAt/tCt						NEWRECORD																																																																									
RAD52	5893	MSKCC	GRCh37	12	1042167	1042167	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005937-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1167	82	491	0	ENST00000358495.3:c.58G>T	p.Gly20Cys	p.G20C	ENST00000358495	NM_134424.2	20	Ggc/Tgc						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21562246	21562246	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005937-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	88	651	0	ENST00000382592.4:c.1673G>C	p.Arg558Pro	p.R558P	ENST00000382592	NM_014572.2	558	cGc/cCc						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39934230	39934230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005937-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1406	118	740	1	ENST00000378444.4:c.369G>T	p.Gln123His	p.Q123H	ENST00000378444	NM_001123385.1	123	caG/caT						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44928854	44928854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005937-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			817	100	483	0	ENST00000377967.4:c.1954G>T	p.Ala652Ser	p.A652S	ENST00000377967	NM_021140.2	652	Gca/Tca						NEWRECORD																																																																									
IGF2	3481	MSKCC	GRCh37	11	2161442	2161442	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005937-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1227	119	677	0	ENST00000434045.2:c.85del	p.Val29Ter	p.V29*	ENST00000434045	NM_001127598.1	29	Gta/ta						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63829486	63829486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013936-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	140	422	0	ENST00000279873.7:c.1129A>G	p.Ile377Val	p.I377V	ENST00000279873	NM_032199.2	377	Att/Gtt						NEWRECORD																																																																									
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	57	534	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32911743	32911743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	55	1016	0	ENST00000380152.3:c.3251G>A	p.Ser1084Asn	p.S1084N	ENST00000380152		1084	aGt/aAt						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	141	700	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	228	790	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602328	10602328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	148	1124	0	ENST00000171111.5:c.1250G>T	p.Gly417Val	p.G417V	ENST00000171111	NM_203500.1	417	gGg/gTg						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27022914	27022942	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCGCCGCCAGCAGCCTGGGCAACCCG	CCGCCGCCGCCAGCAGCCTGGGCAACCCG	-			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	17	107	0	ENST00000324856.7:c.31_59del	p.Ser11AlafsTer90	p.S11Afs*90	ENST00000324856	NM_006015.4	7	cCCGCCGCCGCCAGCAGCCTGGGCAACCCG/c						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023441	27023441	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	109	1005	3	ENST00000324856.7:c.547G>T	p.Ala183Ser	p.A183S	ENST00000324856	NM_006015.4	183	Gcg/Tcg						NEWRECORD																																																																									
FUBP1	8880	MSKCC	GRCh37	1	78429983	78429983	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	215	593	0	ENST00000370768.2:c.896A>G	p.Lys299Arg	p.K299R	ENST00000370768	NM_003902.3	299	aAa/aGa						NEWRECORD																																																																									
IKBKE	9641	MSKCC	GRCh37	1	206652413	206652413	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	109	876	1	ENST00000367120.3:c.1120A>T	p.Thr374Ser	p.T374S	ENST00000367120	NM_014002.3	374	Acg/Tcg						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243727020	243727020	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	77	517	0	ENST00000263826.5:c.948+2T>A		p.X316_splice	ENST00000263826	NM_005465.4	316							NEWRECORD																																																																									
CYLD	1540	MSKCC	GRCh37	16	50783747	50783747	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	142	887	0	ENST00000398568.2:c.138A>G	p.Ile46Met	p.I46M	ENST00000398568	NM_001042412.1	46	atA/atG						NEWRECORD																																																																									
ALOX12B	242	MSKCC	GRCh37	17	7983630	7983631	+	missense_variant	Missense_Mutation	DNP	AG	AG	TT			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	69	700	1	ENST00000319144.4:c.676_677delinsAA	p.Leu226Lys	p.L226K	ENST00000319144	NM_001139.2	226	CTg/AAg						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15276687	15276702	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGCAGCCGCTTGGC	CCAGCAGCCGCTTGGC	-			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	409	968	0	ENST00000263388.2:c.5563_5578del	p.Ala1855MetfsTer51	p.A1855Mfs*51	ENST00000263388	NM_000435.2	1855	GCCAAGCGGCTGCTGGat/at						NEWRECORD																																																																									
UPF1	5976	MSKCC	GRCh37	19	18972856	18972856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	79	808	0	ENST00000262803.5:c.2495G>A	p.Arg832His	p.R832H	ENST00000262803	NM_002911.3	832	cGc/cAc						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212248681	212248681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	183	571	0	ENST00000342788.4:c.3586C>T	p.Pro1196Ser	p.P1196S	ENST00000342788	NM_005235.2	1196	Ccc/Tcc						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41566521	41566521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	237	654	1	ENST00000263253.7:c.4398G>T	p.Trp1466Cys	p.W1466C	ENST00000263253	NM_001429.3	1466	tgG/tgT						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55131096	55131096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	236	566	1	ENST00000257290.5:c.639G>T	p.Glu213Asp	p.E213D	ENST00000257290	NM_006206.4	213	gaG/gaT						NEWRECORD																																																																									
MSH3	4437	MSKCC	GRCh37	5	80160631	80160631	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	91	753	1	ENST00000265081.6:c.3001-1G>T		p.X1001_splice	ENST00000265081	NM_002439.4	1001							NEWRECORD																																																																									
IFNGR1	3459	MSKCC	GRCh37	6	137519236	137519236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	71	631	0	ENST00000367739.4:c.1402G>A	p.Val468Met	p.V468M	ENST00000367739	NM_000416.2	468	Gtg/Atg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	84	611	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0014197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	78	910	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	230	907	0	ENST00000269305.4:c.379T>C	p.Ser127Pro	p.S127P	ENST00000269305	NM_001126112.2	127	Tcc/Ccc						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	49030478	49030478	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	94	429	0	ENST00000267163.4:c.1953T>A	p.Tyr651Ter	p.Y651*	ENST00000267163	NM_000321.2	651	taT/taA						NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44949127	44949127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	23	294	0	ENST00000377967.4:c.3688G>A	p.Ala1230Thr	p.A1230T	ENST00000377967	NM_021140.2	1230	Gct/Act						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0014161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	144	852	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	10031854	10031854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	34	540	1	ENST00000330684.3:c.969G>T	p.Gln323His	p.Q323H	ENST00000330684	NM_001134407.1	323	caG/caT						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89711984	89711988	+	frameshift_variant	Frame_Shift_Del	DEL	AAACT	AAACT	-			P-0014161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	56	308	0	ENST00000371953.3:c.603_607del	p.Glu201AspfsTer40	p.E201Dfs*40	ENST00000371953	NM_000314.4	201	gAAACT/g						NEWRECORD																																																																									
PMS2	5395	MSKCC	GRCh37	7	6038860	6038860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	65	761	2	ENST00000265849.7:c.584C>T	p.Ser195Leu	p.S195L	ENST00000265849	NM_000535.5	195	tCa/tTa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	164	666	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0014278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	141	592	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa						NEWRECORD																																																																									
AXL	558	MSKCC	GRCh37	19	41754431	41754431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	296	583	0	ENST00000301178.4:c.1550G>A	p.Gly517Asp	p.G517D	ENST00000301178	NM_021913.4	517	gGc/gAc						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140624405	140624426	+	protein_altering_variant	In_Frame_Del	DEL	GGCGCCGGCGCCGGCGCCGGCC	GGCGCCGGCGCCGGCGCCGGCC	A			P-0014278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	123	212	0	ENST00000288602.6:c.78_99delinsT	p.Glu26_Ala33delinsAsp	p.E26_A33delinsD	ENST00000288602	NM_004333.4	26	gaGGCCGGCGCCGGCGCCGGCGCC/gaT						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717732	89717749	+	inframe_deletion	In_Frame_Del	DEL	ATCAAAGTAGAGTTCTTC	ATCAAAGTAGAGTTCTTC	-			P-0014477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	91	311	0	ENST00000371953.3:c.757_774del	p.Ile253_Phe258del	p.I253_F258del	ENST00000371953	NM_000314.4	253	ATCAAAGTAGAGTTCTTC/-						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115898	8115899	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0014477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	124	448	0	ENST00000346208.3:c.1244_1245del	p.Met415ThrfsTer91	p.M415Tfs*91	ENST00000346208		415	aTG/a						NEWRECORD																																																																									
SDHC	6391	MSKCC	GRCh37	1	161332191	161332191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	33	178	1	ENST00000367975.2:c.478G>A	p.Val160Met	p.V160M	ENST00000367975	NM_003001.3	160	Gtg/Atg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	124	735	0	ENST00000269305.4:c.730G>C	p.Gly244Arg	p.G244R	ENST00000269305	NM_001126112.2	244	Ggc/Cgc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	65	387	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10602637	10602637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	53	468	0	ENST00000171111.5:c.941C>T	p.Thr314Met	p.T314M	ENST00000171111	NM_203500.1	314	aCg/aTg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	60	274	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0010359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	43	313	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-						NEWRECORD																																																																									
ALOX12B	242	MSKCC	GRCh37	17	7979530	7979530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	45	284	1	ENST00000319144.4:c.1495C>T	p.Arg499Cys	p.R499C	ENST00000319144	NM_001139.2	499	Cgc/Tgc						NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64574558	64574558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	602	513	0	ENST00000337652.1:c.852del	p.Leu285Ter	p.L285*	ENST00000337652	NM_130803.2	284	gcC/gc						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29559852	29559852	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0011343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	179	293	0	ENST00000358273.4:c.3449C>G	p.Ser1150Ter	p.S1150*	ENST00000358273	NM_001042492.2	1150	tCa/tGa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0011343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	159	229	0	ENST00000269305.4:c.673-2A>T		p.X225_splice	ENST00000269305	NM_001126112.2	225							NEWRECORD																																																																									
INHA	3623	MSKCC	GRCh37	2	220437245	220437245	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	184	477	0	ENST00000243786.2:c.149G>T	p.Gly50Val	p.G50V	ENST00000243786	NM_002191.3	50	gGt/gTt						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187628760	187628760	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	63	346	0	ENST00000441802.2:c.2222C>G	p.Ser741Cys	p.S741C	ENST00000441802	NM_005245.3	741	tCc/tGc						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145740820	145740820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	253	377	0	ENST00000428558.2:c.1280C>T	p.Ala427Val	p.A427V	ENST00000428558	NM_004260.3	427	gCt/gTt						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72992626	72992626	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	110	442	1	ENST00000268489.5:c.1419G>T	p.Glu473Asp	p.E473D	ENST00000268489	NM_006885.3	473	gaG/gaT						NEWRECORD																																																																									
STAT5B	6777	MSKCC	GRCh37	17	40369245	40369245	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1349	136	498	0	ENST00000293328.3:c.1313A>T	p.Glu438Val	p.E438V	ENST00000293328	NM_012448.3	438	gAa/gTa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0011542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	790	426	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175582	112175582	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	134	367	0	ENST00000257430.4:c.4291A>G	p.Met1431Val	p.M1431V	ENST00000257430	NM_000038.5	1431	Atg/Gtg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	314	347	0	ENST00000269305.4:c.584T>G	p.Ile195Ser	p.I195S	ENST00000269305	NM_001126112.2	195	aTc/aGc						NEWRECORD																																																																									
SOX2	6657	MSKCC	GRCh37	3	181430322	181430322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	147	305	2	ENST00000325404.1:c.174G>T	p.Lys58Asn	p.K58N	ENST00000325404	NM_003106.3	58	aaG/aaT						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0011461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	63	307	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	55	376	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag						NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913381		P-0011461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	32	301	1	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578217	7578217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	67	488	0	ENST00000269305.4:c.632C>T	p.Thr211Ile	p.T211I	ENST00000269305	NM_001126112.2	211	aCt/aTt						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66509082	66509082	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0011461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	52	235	0	ENST00000273854.3:c.245G>T	p.Gly82Val	p.G82V	ENST00000273854	NM_004439.5	82	gGg/gTg						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87342653	87342653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	73	322	0	ENST00000277120.3:c.938C>A	p.Pro313Gln	p.P313Q	ENST00000277120		313	cCa/cAa						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2138122	2138122	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	60	346	0	ENST00000219476.3:c.5142G>C	p.Gln1714His	p.Q1714H	ENST00000219476	NM_000548.3	1714	caG/caC						NEWRECORD																																																																									
BRCA1	672	MSKCC	GRCh37	17	41209121	41209121	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	190	490	0	ENST00000357654.3:c.5225A>T	p.Asn1742Ile	p.N1742I	ENST00000357654	NM_007294.3	1742	aAt/aTt						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63410441	63410441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	77	477	1	ENST00000330258.3:c.2726C>T	p.Ser909Phe	p.S909F	ENST00000330258	NM_152424.3	909	tCc/tTc						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2136298	2136303	+	inframe_deletion	In_Frame_Del	DEL	GGACAA	GGACAA	-			P-0011461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	61	407	0	ENST00000219476.3:c.4769_4774del	p.Asp1590_Lys1591del	p.D1590_K1591del	ENST00000219476	NM_000548.3	1589	ccGGACAAg/ccg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0014248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	42	871	2	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc						NEWRECORD																																																																									
LATS2	26524	MSKCC	GRCh37	13	21562477	21562477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	14	105	0	ENST00000382592.4:c.1442C>T	p.Ala481Val	p.A481V	ENST00000382592	NM_014572.2	481	gCg/gTg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	483	587	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	513	550	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0013277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	105	480	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			62	434	386	0	ENST00000269305.4:c.535C>G	p.His179Asp	p.H179D	ENST00000269305	NM_001126112.2	179	Cat/Gat						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56481823	56481823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	216	732	0	ENST00000267101.3:c.751G>A	p.Asp251Asn	p.D251N	ENST00000267101	NM_001982.3	251	Gac/Aac						NEWRECORD																																																																									
INHA	3623	MSKCC	GRCh37	2	220440081	220440081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1464	161	1079	0	ENST00000243786.2:c.934C>T	p.Pro312Ser	p.P312S	ENST00000243786	NM_002191.3	312	Cct/Tct						NEWRECORD																																																																									
EIF4A2	1974	MSKCC	GRCh37	3	186504360	186504360	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	171	504	0	ENST00000323963.5:c.697A>G	p.Ile233Val	p.I233V	ENST00000323963		233	Att/Gtt						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32911478	32911478	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2173	481	1206	0	ENST00000380152.3:c.2986C>G	p.Leu996Val	p.L996V	ENST00000380152		996	Ctc/Gtc						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68772278	68772278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	210	689	0	ENST00000261769.5:c.127C>T	p.Arg43Trp	p.R43W	ENST00000261769	NM_004360.3	43	Cgg/Tgg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	51	230	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
PMS1	5378	MSKCC	GRCh37	2	190682778	190682778	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	35	150	0	ENST00000441310.2:c.454C>A	p.Leu152Ile	p.L152I	ENST00000441310	NM_000534.4	152	Cta/Ata						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52437792	52437792	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0011453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1187	107	567	0	ENST00000460680.1:c.1369A>T	p.Lys457Ter	p.K457*	ENST00000460680	NM_004656.3	457	Aag/Tag						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610163	10610163	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	87	311	0	ENST00000171111.5:c.547A>C	p.Asn183His	p.N183H	ENST00000171111	NM_203500.1	183	Aat/Cat						NEWRECORD																																																																									
AMER1	139285	MSKCC	GRCh37	X	63412038	63412038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	55	366	0	ENST00000330258.3:c.1129G>A	p.Asp377Asn	p.D377N	ENST00000330258	NM_152424.3	377	Gat/Aat						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52437803	52437809	+	protein_altering_variant	In_Frame_Del	DEL	TTGAGCT	TTGAGCT	A			P-0011453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1199	90	568	0	ENST00000460680.1:c.1352_1358delinsT	p.Lys451_Lys453delinsIle	p.K451_K453delinsI	ENST00000460680	NM_004656.3	451	aAGCTCAAa/aTa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	21	461	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	71	480	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0010691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	86	508	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40980903	40980903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	41	394	0	ENST00000373198.4:c.1583C>T	p.Ser528Leu	p.S528L	ENST00000373198	NM_133170.3	528	tCg/tTg						NEWRECORD																																																																									
BCL2L1	598	MSKCC	GRCh37	20	30253772	30253772	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1347	105	574	0	ENST00000307677.4:c.682T>G	p.Ser228Ala	p.S228A	ENST00000307677	NM_138578.1	228	Tca/Gca						NEWRECORD																																																																									
RFWD2	64326	MSKCC	GRCh37	1	176176012	176176018	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAAGA	GGGAAGA	-			P-0014204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	461	659	0	ENST00000367669.3:c.97_103del	p.Ser33ArgfsTer65	p.S33Rfs*65	ENST00000367669	NM_022457.5	33	TCTTCCCcg/cg						NEWRECORD																																																																									
ETV6	2120	MSKCC	GRCh37	12	12038900	12038900	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	449	513	0	ENST00000396373.4:c.1193T>G	p.Leu398Arg	p.L398R	ENST00000396373	NM_001987.4	398	cTg/cGg						NEWRECORD																																																																									
PAK7	57144	MSKCC	GRCh37	20	9624803	9624803	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	105	396	0	ENST00000353224.5:c.174C>A	p.Cys58Ter	p.C58*	ENST00000353224	NM_177990.2	58	tgC/tgA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0010738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	348	442	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga						NEWRECORD																																																																									
RARA	5914	MSKCC	GRCh37	17	38510560	38510560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	139	336	0	ENST00000254066.5:c.814C>T	p.Arg272Trp	p.R272W	ENST00000254066	NM_000964.3	272	Cgg/Tgg						NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5286145	5286145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	125	342	0	ENST00000357368.4:c.7C>T	p.Pro3Ser	p.P3S	ENST00000357368	NM_002850.3	3	Ccc/Tcc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	614	515	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	407	668	0	ENST00000269305.4:c.581T>C	p.Leu194Pro	p.L194P	ENST00000269305	NM_001126112.2	194	cTt/cCt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	58	578	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
AXIN2	8313	MSKCC	GRCh37	17	63554453	63554453	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	73	669	0	ENST00000307078.5:c.286C>T	p.Arg96Ter	p.R96*	ENST00000307078	NM_004655.3	96	Cga/Tga						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0010742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	569	620	1	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0010742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	75	191	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa						NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0010742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	783	399	3	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8518080	8518080	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	120	367	0	ENST00000356435.5:c.1311G>C	p.Gln437His	p.Q437H	ENST00000356435		437	caG/caC						NEWRECORD																																																																									
RARA	5914	MSKCC	GRCh37	17	38487588	38487588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	687	617	1	ENST00000254066.5:c.118G>A	p.Ala40Thr	p.A40T	ENST00000254066	NM_000964.3	40	Gct/Act						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0013263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	143	815	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	340	601	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0013263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	137	772	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0013263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	100	660	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56152491	56152491	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	74	412	1	ENST00000399503.3:c.547C>T	p.Arg183Ter	p.R183*	ENST00000399503	NM_005921.1	183	Cga/Tga						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175245	112175245	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	85	415	0	ENST00000257430.4:c.3954del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1318	gaT/ga						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153271228	153271228	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	168	505	0	ENST00000281708.4:c.550G>T	p.Gly184Ter	p.G184*	ENST00000281708	NM_033632.3	184	Gga/Tga						NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56478928	56478928	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	138	858	0	ENST00000267101.3:c.384C>G	p.Ser128Arg	p.S128R	ENST00000267101	NM_001982.3	128	agC/agG						NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41523522	41523626	+	inframe_deletion	In_Frame_Del	DEL	CAGGCCTGGTGACTCCAGTTGCCCAAGGGATGGGTTCTGGAGCACATACAGCTGATCCAGAGAAGCGCAAGCTCATCCAGCAGCAGCTTGTTCTCCTTTTGCATG	CAGGCCTGGTGACTCCAGTTGCCCAAGGGATGGGTTCTGGAGCACATACAGCTGATCCAGAGAAGCGCAAGCTCATCCAGCAGCAGCTTGTTCTCCTTTTGCATG	-			P-0013263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	248	497	0	ENST00000263253.7:c.939_1043del	p.Gly314_Ala348del	p.G314_A348del	ENST00000263253	NM_001429.3	313	cCAGGCCTGGTGACTCCAGTTGCCCAAGGGATGGGTTCTGGAGCACATACAGCTGATCCAGAGAAGCGCAAGCTCATCCAGCAGCAGCTTGTTCTCCTTTTGCATGct/cct						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0014272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	112	381	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
FH	2271	MSKCC	GRCh37	1	241667381	241667381	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	122	449	0	ENST00000366560.3:c.1069A>G	p.Ile357Val	p.I357V	ENST00000366560	NM_000143.3	357	Atc/Gtc						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3779719	3779719	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	149	411	0	ENST00000262367.5:c.5329C>T	p.Gln1777Ter	p.Q1777*	ENST00000262367	NM_004380.2	1777	Cag/Tag						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47163698	47163698	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	81	273	1	ENST00000409792.3:c.2428G>T	p.Glu810Ter	p.E810*	ENST00000409792	NM_014159.6	810	Gaa/Taa						NEWRECORD																																																																									
NOTCH1	4851	MSKCC	GRCh37	9	139438537	139438538	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0014272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	174	644	0	ENST00000277541.6:c.78_79delinsTT	p.Gln26_Pro27delinsHisSer	p.Q26_P27delinsHS	ENST00000277541	NM_017617.3	26	caGCcc/caTTcc						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180046086	180046086	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0070319-T01-IH3									Unknown	SOMATIC				MSK-IMPACT			963	70	1132	1	ENST00000261937.6:c.2785T>G	p.Phe929Val	p.F929V	ENST00000261937	NM_182925.4	929	Ttc/Gtc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11194520	11194520	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759390743		P-0086121-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			267	215	662	0	ENST00000361445.4:c.5134G>A	p.Asp1712Asn	p.D1712N	ENST00000361445	NM_004958.3	1712	Gat/Aat																																																																															
TET1	80312	MSKCC	GRCh37	10	70332477	70332477	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs142008363		P-0086121-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			208	218	738	0	ENST00000373644.4:c.382G>T	p.Val128Phe	p.V128F	ENST00000373644	NM_030625.2	128	Gtt/Ttt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28578246	28578246	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0086121-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			404	28	698	2	ENST00000241453.7:c.2925C>A	p.Phe975Leu	p.F975L	ENST00000241453	NM_004119.2	975	ttC/ttA																																																																															
RIT1	6016	MSKCC	GRCh37	1	155870226	155870226	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0086121-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			183	165	696	0	ENST00000368323.3:c.613A>C	p.Lys205Gln	p.K205Q	ENST00000368323	NM_006912.5	205	Aag/Cag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578501	7578520	+	frameshift_variant	Frame_Shift_Del	DEL	CACAGGGCAGGTCTTGGCCA	CACAGGGCAGGTCTTGGCCA	T			P-0086121-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			443	51	915	0	ENST00000269305.4:c.410_429delinsA	p.Leu137HisfsTer27	p.L137Hfs*27	ENST00000269305	NM_001126112.2	137	cTGGCCAAGACCTGCCCTGTG/cA																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643908	52643908	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0086121-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			138	108	595	0	ENST00000394830.3:c.1988A>G	p.Asn663Ser	p.N663S	ENST00000394830	NM_018313.4	663	aAt/aGt																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002304-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1076	435	494	0	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721946	176721946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002304-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			592	304	411	0	ENST00000439151.2:c.7577C>T	p.Pro2526Leu	p.P2526L	ENST00000439151	NM_022455.4	2526	cCc/cTc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151927376	151927376	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002304-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			91	48	53	0	ENST00000262189.6:c.2800G>T	p.Asp934Tyr	p.D934Y	ENST00000262189	NM_170606.2	934	Gat/Tat																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500912	8500912	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002304-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			951	73	484	0	ENST00000356435.5:c.1970A>T	p.Asp657Val	p.D657V	ENST00000356435		657	gAc/gTc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061104	38061134	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGCGGCTCTCAGGGCCGCCCTTGGCGCCG	CTTGCGGCTCTCAGGGCCGCCCTTGGCGCCG	-			P-0002304-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			126	51	45	0	ENST00000250448.2:c.855_885del	p.Ser285ArgfsTer26	p.S285Rfs*26	ENST00000250448	NM_004496.3	285	agCGGCGCCAAGGGCGGCCCTGAGAGCCGCAAG/ag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0004496-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			886	113	721	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0004496-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			699	208	621	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821619	72821621	+	inframe_deletion	In_Frame_Del	DEL	CCG	CCG	-	rs751575363		P-0004496-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			87	32	118	0	ENST00000268489.5:c.10554_10556del	p.Gly3527del	p.G3527del	ENST00000268489	NM_006885.3	3518	ggCGGt/ggt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865342	57865342	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145582008		P-0004496-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			553	139	889	6	ENST00000228682.2:c.2819G>A	p.Arg940His	p.R940H	ENST00000228682	NM_005269.2	940	cGt/cAt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156830791	156830791	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs748402400		P-0056782-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			881	385	549	0	ENST00000524377.1:c.65T>A	p.Leu22Gln	p.L22Q	ENST00000524377	NM_002529.3	22	cTg/cAg																																																																															
POLE	5426	MSKCC	GRCh37	12	133220476	133220476	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372901803		P-0056782-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			280	651	540	0	ENST00000320574.5:c.4237G>A	p.Glu1413Lys	p.E1413K	ENST00000320574	NM_006231.2	1413	Gag/Aag																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914236	32914236	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs4987117		P-0056782-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			66	115	408	0	ENST00000380152.3:c.5744C>T	p.Thr1915Met	p.T1915M	ENST00000380152		1915	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0056782-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			798	539	773	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																															
FOXL2	668	MSKCC	GRCh37	3	138664951	138664951	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs758494065		P-0056782-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			268	756	540	0	ENST00000330315.3:c.614C>G	p.Pro205Arg	p.P205R	ENST00000330315	NM_023067.3	205	cCg/cGg																																																																															
MET	4233	MSKCC	GRCh37	7	116381050	116381050	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0056782-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			945	385	601	0	ENST00000397752.3:c.1672C>T	p.Gln558Ter	p.Q558*	ENST00000397752	NM_000245.2	558	Caa/Taa																																																																															
ATRX	546	MSKCC	GRCh37	X	76938153	76938153	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs61752455		P-0056782-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			181	296	348	0	ENST00000373344.5:c.2595C>G	p.His865Gln	p.H865Q	ENST00000373344	NM_000489.3	865	caC/caG																																																																															
AKT3	10000	MSKCC	GRCh37	1	243668600	243668600	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0056782-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			896	53	491	0	ENST00000263826.5:c.1391G>T	p.Arg464Met	p.R464M	ENST00000263826	NM_005465.4	464	aGg/aTg																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349766	89349766	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0056782-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			506	117	553	1	ENST00000301030.4:c.3184A>T	p.Thr1062Ser	p.T1062S	ENST00000301030	NM_001256183.1	1062	Acc/Tcc																																																																															
PARK2	5071	MSKCC	GRCh37	6	162475158	162475158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0056782-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			632	80	511	0	ENST00000366898.1:c.583G>A	p.Glu195Lys	p.E195K	ENST00000366898	NM_004562.2	195	Gaa/Aaa																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192398	138192398	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000597-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			215	93	278	0	ENST00000237289.4:c.34T>A	p.Leu12Met	p.L12M	ENST00000237289	NM_001270507.1	12	Ttg/Atg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151849864	151849864	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs532797666		P-0000597-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			272	275	201	0	ENST00000262189.6:c.12452C>T	p.Ser4151Phe	p.S4151F	ENST00000262189	NM_170606.2	4151	tCt/tTt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460528	8460528	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000597-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			430	160	212	0	ENST00000356435.5:c.3758T>A	p.Met1253Lys	p.M1253K	ENST00000356435		1253	aTg/aAg																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100595	8100595	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747870862		P-0000597-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			794	157	336	0	ENST00000346208.3:c.569T>C	p.Leu190Pro	p.L190P	ENST00000346208		190	cTg/cCg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46233237	46233237	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs370535448		P-0000597-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			407	355	275	0	ENST00000334344.6:c.1456A>G	p.Ile486Val	p.I486V	ENST00000334344	NM_152641.2	486	Ata/Gta																																																																															
BRCA2	675	MSKCC	GRCh37	13	32915295	32915295	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80358906		P-0000597-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			256	77	145	0	ENST00000380152.3:c.6803G>A	p.Arg2268Lys	p.R2268K	ENST00000380152		2268	aGa/aAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912962	32912965	+	frameshift_variant	Frame_Shift_Del	DEL	ACTG	ACTG	-	rs1442953012		P-0000597-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			117	202	223	0	ENST00000380152.3:c.4471_4474del	p.Leu1491LysfsTer12	p.L1491Kfs*12	ENST00000380152		1490	atACTG/at																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610247	10610247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0072092-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			950	76	703	0	ENST00000171111.5:c.463G>T	p.Val155Phe	p.V155F	ENST00000171111	NM_203500.1	155	Gtc/Ttc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220707	1220708	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0072092-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			794	42	589	0	ENST00000326873.7:c.725_726delinsTT	p.Gly242Val	p.G242V	ENST00000326873	NM_000455.4	242	gGG/gTT																																																																															
ZNRF3	84133	MSKCC	GRCh37	22	29446603	29446603	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758750767		P-0072092-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			408	460	670	0	ENST00000544604.2:c.2434G>A	p.Glu812Lys	p.E812K	ENST00000544604	NM_001206998.1	812	Gag/Aag																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992946	72992946	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0072092-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			825	71	651	0	ENST00000268489.5:c.1099A>G	p.Lys367Glu	p.K367E	ENST00000268489	NM_006885.3	367	Aaa/Gaa																																																																															
KDR	3791	MSKCC	GRCh37	4	55970978	55970978	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs777299134		P-0072092-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			416	407	579	0	ENST00000263923.4:c.1819G>C	p.Asp607His	p.D607H	ENST00000263923	NM_002253.2	607	Gat/Cat																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857286	9857286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072092-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			825	65	691	0	ENST00000330684.3:c.4115G>A	p.Arg1372Lys	p.R1372K	ENST00000330684	NM_001134407.1	1372	aGg/aAg																																																																															
RET	5979	MSKCC	GRCh37	10	43596150	43596150	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0072092-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			771	59	605	0	ENST00000355710.3:c.317G>A	p.Trp106Ter	p.W106*	ENST00000355710	NM_020975.4	106	tGg/tAg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41197698	41197698	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0072092-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			1067	68	769	0	ENST00000357654.3:c.5589C>G	p.Tyr1863Ter	p.Y1863*	ENST00000357654	NM_007294.3	1863	taC/taG																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858750	9858750	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0072092-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			667	49	563	0	ENST00000330684.3:c.2651A>T	p.Asp884Val	p.D884V	ENST00000330684	NM_001134407.1	884	gAc/gTc																																																																															
MGA	23269	MSKCC	GRCh37	15	42035125	42035125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072092-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			493	543	682	0	ENST00000219905.7:c.4967C>T	p.Ala1656Val	p.A1656V	ENST00000219905	NM_001164273.1	1656	gCc/gTc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59793379	59793379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0072092-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			475	41	429	0	ENST00000259008.2:c.2425G>A	p.Gly809Ser	p.G809S	ENST00000259008	NM_032043.2	809	Ggt/Agt																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261592	16261592	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0068445-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			261	265	680	0	ENST00000375759.3:c.8857A>G	p.Ile2953Val	p.I2953V	ENST00000375759	NM_015001.2	2953	Att/Gtt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821619	72821621	+	inframe_deletion	In_Frame_Del	DEL	CCG	CCG	-	rs751575363		P-0068445-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			169	108	624	11	ENST00000268489.5:c.10554_10556del	p.Gly3527del	p.G3527del	ENST00000268489	NM_006885.3	3518	ggCGGt/ggt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027322	48027322	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780671		P-0068445-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			297	31	636	0	ENST00000234420.5:c.2200G>A	p.Val734Met	p.V734M	ENST00000234420	NM_000179.2	734	Gtg/Atg																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128038139	128038139	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371627165		P-0068445-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			254	209	507	0	ENST00000285398.2:c.1411G>A	p.Val471Ile	p.V471I	ENST00000285398	NM_000122.1	471	Gtc/Atc																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021818	71021818	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs869025203		P-0068445-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			291	8	533	0	ENST00000318789.4:c.1540C>T	p.Arg514Cys	p.R514C	ENST00000318789	NM_032682.5	514	Cgt/Tgt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0068445-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			319	584	499	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7578425	7578425	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	AAA			P-0068445-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			398	63	759	0	ENST00000269305.4:c.505delinsTTT	p.Met169PhefsTer2	p.M169Ffs*2	ENST00000269305	NM_001126112.2	169	Atg/TTTtg																																																																															
RB1	5925	MSKCC	GRCh37	13	48919300	48919300	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0068445-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			225	14	435	0	ENST00000267163.4:c.465T>G	p.Tyr155Ter	p.Y155*	ENST00000267163	NM_000321.2	155	taT/taG																																																																															
ROS1	6098	MSKCC	GRCh37	6	117739641	117739641	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0068445-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			175	121	484	0	ENST00000368508.3:c.152A>C	p.His51Pro	p.H51P	ENST00000368508	NM_002944.2	51	cAt/cCt																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509000	106509000	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0068445-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			209	239	644	0	ENST00000359195.3:c.994G>C	p.Val332Leu	p.V332L	ENST00000359195	NM_002649.2	332	Gtc/Ctc																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27058018	27058018	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0067045-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			366	48	546	2	ENST00000324856.7:c.1726C>T	p.Gln576Ter	p.Q576*	ENST00000324856	NM_006015.4	576	Cag/Tag																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391022	89391022	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0067045-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			185	24	430	0	ENST00000336596.2:c.1088G>T	p.Cys363Phe	p.C363F	ENST00000336596	NM_005233.5	363	tGt/tTt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47143017	47143017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0067045-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			147	19	418	0	ENST00000409792.3:c.4946G>T	p.Gly1649Val	p.G1649V	ENST00000409792	NM_014159.6	1649	gGg/gTg																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31395624	31395624	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs756972254		P-0067045-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			346	49	555	0	ENST00000328111.2:c.2477G>T	p.Arg826Leu	p.R826L	ENST00000328111	NM_006892.3	826	cGc/cTc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0067045-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			83	31	406	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SETD2	29072	MSKCC	GRCh37	3	47084127	47084127	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0067045-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			240	30	574	0	ENST00000409792.3:c.7162del	p.Thr2388ProfsTer23	p.T2388Pfs*23	ENST00000409792	NM_014159.6	2388	Acc/cc																																																																															
PLK2	10769	MSKCC	GRCh37	5	57751146	57751146	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0067045-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			186	27	502	0	ENST00000274289.3:c.1721A>T	p.Tyr574Phe	p.Y574F	ENST00000274289	NM_006622.3	574	tAc/tTc																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573234	64573234	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0067045-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			353	48	520	0	ENST00000337652.1:c.1073A>G	p.Tyr358Cys	p.Y358C	ENST00000337652	NM_130803.2	358	tAc/tGc																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633673	69633673	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0067045-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			190	26	411	0	ENST00000334134.2:c.29G>C	p.Ser10Thr	p.S10T	ENST00000334134	NM_005247.2	10	aGc/aCc																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7980482	7980482	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0067045-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			330	39	525	0	ENST00000319144.4:c.1101del	p.Ile368SerfsTer13	p.I368Sfs*13	ENST00000319144	NM_001139.2	367	ccC/cc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131911521	131911521	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002794-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			214	19	341	0	ENST00000265335.6:c.266T>G	p.Val89Gly	p.V89G	ENST00000265335		89	gTc/gGc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010672-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			89	464	255	0	ENST00000269305.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000269305	NM_001126112.2	105	Ggc/Tgc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538374	9538374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868564987		P-0010672-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			95	156	223	0	ENST00000353224.5:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000353224	NM_177990.2	542	Gaa/Aaa																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46740247	46740247	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010672-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			401	244	185	0	ENST00000371975.4:c.1727G>T	p.Gly576Val	p.G576V	ENST00000371975	NM_003579.3	576	gGg/gTg																																																																															
DDR2	4921	MSKCC	GRCh37	1	162737067	162737067	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010672-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			338	81	289	0	ENST00000367921.3:c.1211G>T	p.Cys404Phe	p.C404F	ENST00000367921	NM_006182.2	404	tGc/tTc																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136873409	136873409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010672-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			448	304	759	1	ENST00000241393.3:c.89G>T	p.Arg30Leu	p.R30L	ENST00000241393	NM_003467.2	30	cGt/cTt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134514495	134514495	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010672-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			547	89	395	0	ENST00000398015.3:c.22C>G	p.Leu8Val	p.L8V	ENST00000398015	NM_004441.4	8	Ctg/Gtg																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288785	33288785	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010672-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			412	104	138	0	ENST00000374542.5:c.767G>T	p.Arg256Leu	p.R256L	ENST00000374542	NM_001141970.1	256	cGc/cTc																																																																															
MYC	4609	MSKCC	GRCh37	8	128750563	128750563	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010672-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			922	190	362	0	ENST00000377970.2:c.100G>T	p.Val34Leu	p.V34L	ENST00000377970	NM_002467.4	34	Gtg/Ttg																																																																															
TET1	80312	MSKCC	GRCh37	10	70404995	70404995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010672-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			131	15	226	0	ENST00000373644.4:c.2509C>T	p.His837Tyr	p.H837Y	ENST00000373644	NM_030625.2	837	Cat/Tat																																																																															
PGR	5241	MSKCC	GRCh37	11	100998178	100998178	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010672-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			694	144	283	0	ENST00000325455.5:c.1624C>G	p.Leu542Val	p.L542V	ENST00000325455	NM_001202474.3	542	Ctc/Gtc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118352570	118352570	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010672-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			426	229	297	0	ENST00000534358.1:c.3775A>G	p.Ser1259Gly	p.S1259G	ENST00000534358	NM_005933.3	1259	Agt/Ggt																																																																															
CBL	867	MSKCC	GRCh37	11	119155730	119155730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010672-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			517	376	292	0	ENST00000264033.4:c.1483C>A	p.Pro495Thr	p.P495T	ENST00000264033	NM_005188.3	495	Ccg/Acg																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120615	115120615	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0010672-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			569	204	330	0	ENST00000257566.3:c.389+2T>G		p.X130_splice	ENST00000257566	NM_016569.3	130																																																																																
AKT1	207	MSKCC	GRCh37	14	105243109	105243109	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0010672-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			273	114	167	0	ENST00000349310.3:c.176-2A>T		p.X59_splice	ENST00000349310	NM_001014432.1	59																																																																																
MAP2K2	5605	MSKCC	GRCh37	19	4117605	4117605	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0010672-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			268	110	195	0	ENST00000262948.5:c.115A>T	p.Lys39Ter	p.K39*	ENST00000262948	NM_030662.3	39	Aag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097122	11097122	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010672-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			56	239	142	0	ENST00000344626.4:c.613C>T	p.Gln205Ter	p.Q205*	ENST00000344626	NM_003072.3	205	Cag/Tag																																																																															
TOP1	7150	MSKCC	GRCh37	20	39750645	39750645	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0010672-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			311	28	160	0	ENST00000361337.2:c.2046-1G>C		p.X682_splice	ENST00000361337	NM_003286.2	682																																																																																
CHEK2	11200	MSKCC	GRCh37	22	29120989	29120989	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010672-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			429	68	324	1	ENST00000328354.6:c.568G>T	p.Ala190Ser	p.A190S	ENST00000328354	NM_007194.3	190	Gca/Tca																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933257	39933257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010672-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			61	328	242	0	ENST00000378444.4:c.1342G>C	p.Val448Leu	p.V448L	ENST00000378444	NM_001123385.1	448	Gtg/Ctg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95573980	95573980	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010672-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			275	90	332	0	ENST00000343455.3:c.2769del	p.Lys923AsnfsTer2	p.K923Nfs*2	ENST00000343455	NM_177438.2	923	aaA/aa																																																																															
RET	5979	MSKCC	GRCh37	10	43607598	43607598	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010672-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			771	146	258	0	ENST00000355710.3:c.1575del	p.Leu526TrpfsTer112	p.L526Wfs*112	ENST00000355710	NM_020975.4	525	cGg/cg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023890	27023890	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010672-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			247	47	47	0	ENST00000324856.7:c.997del	p.Ala333ProfsTer30	p.A333Pfs*30	ENST00000324856	NM_006015.4	332	atG/at																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018960-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			719	243	704	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28882987	28882987	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018960-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			781	159	673	0	ENST00000282397.4:c.3713T>A	p.Met1238Lys	p.M1238K	ENST00000282397	NM_002019.4	1238	aTg/aAg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3820946	3820946	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs759041100		P-0018960-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			599	143	672	1	ENST00000262367.5:c.2505G>T	p.Met835Ile	p.M835I	ENST00000262367	NM_004380.2	835	atG/atT																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59820433	59820433	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018960-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			765	141	697	1	ENST00000259008.2:c.2320G>T	p.Asp774Tyr	p.D774Y	ENST00000259008	NM_032043.2	774	Gac/Tac																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78857653	78857653	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018960-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			798	164	703	0	ENST00000306801.3:c.1723C>T	p.Gln575Ter	p.Q575*	ENST00000306801	NM_020761.2	575	Cag/Tag																																																																															
STK11	6794	MSKCC	GRCh37	19	1207120	1207120	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018960-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			588	261	877	1	ENST00000326873.7:c.208G>T	p.Glu70Ter	p.E70*	ENST00000326873	NM_000455.4	70	Gag/Tag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121151	11121152	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0018960-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			627	257	860	0	ENST00000344626.4:c.2223_2224del	p.Arg741SerfsTer82	p.R741Sfs*82	ENST00000344626	NM_003072.3	740	GAg/g																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212537978	212537978	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs141594820		P-0018960-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			289	302	539	0	ENST00000342788.4:c.1627T>A	p.Phe543Ile	p.F543I	ENST00000342788	NM_005235.2	543	Ttt/Att																																																																															
MLH1	4292	MSKCC	GRCh37	3	37089086	37089086	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs63750876		P-0018960-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			399	200	550	0	ENST00000231790.2:c.1808C>G	p.Pro603Arg	p.P603R	ENST00000231790	NM_000249.3	603	cCc/cGc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49935526	49935526	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018960-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			502	350	694	0	ENST00000296474.3:c.1838A>G	p.Gln613Arg	p.Q613R	ENST00000296474	NM_002447.2	613	cAa/cGa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117665371	117665371	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765083865		P-0018960-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			260	180	378	1	ENST00000368508.3:c.4376C>T	p.Ala1459Val	p.A1459V	ENST00000368508	NM_002944.2	1459	gCc/gTc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797506	45797506	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199742231		P-0018960-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			475	332	709	0	ENST00000372115.3:c.971A>G	p.Gln324Arg	p.Q324R	ENST00000372115	NM_001048171.1	324	cAg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540652		P-0062878-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			335	480	806	0	ENST00000269305.4:c.743G>C	p.Arg248Pro	p.R248P	ENST00000269305	NM_001126112.2	248	cGg/cCg																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879585	37879585	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1801201		P-0041984-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			467	390	927	0	ENST00000269571.5:c.1960A>G	p.Ile654Val	p.I654V	ENST00000269571		654	Atc/Gtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs28934577		P-0041984-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			756	79	890	1	ENST00000269305.4:c.770T>A	p.Leu257Gln	p.L257Q	ENST00000269305	NM_001126112.2	257	cTg/cAg																																																																															
MTOR	2475	MSKCC	GRCh37	1	11227551	11227551	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35509012		P-0041984-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			323	299	596	3	ENST00000361445.4:c.4277C>T	p.Pro1426Leu	p.P1426L	ENST00000361445	NM_004958.3	1426	cCg/cTg																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639203	3639203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041984-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			497	488	1157	1	ENST00000294008.3:c.4436G>T	p.Arg1479Leu	p.R1479L	ENST00000294008	NM_032444.2	1479	cGa/cTa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127498	55127498	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041984-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			601	39	616	0	ENST00000257290.5:c.286G>T	p.Gly96Trp	p.G96W	ENST00000257290	NM_006206.4	96	Ggg/Tgg																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31449514	31449514	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041984-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			296	76	352	0	ENST00000344624.3:c.2695C>A	p.His899Asn	p.H899N	ENST00000344624		899	Cat/Aat																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127916252	127916252	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs780682080		P-0041984-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			184	169	511	0	ENST00000373547.4:c.392C>A	p.Thr131Asn	p.T131N	ENST00000373547	NM_002721.4	131	aCc/aAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042552-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			321	72	545	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858935	57858935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042552-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			523	163	1064	0	ENST00000228682.2:c.431G>A	p.Gly144Glu	p.G144E	ENST00000228682	NM_005269.2	144	gGg/gAg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821598	72821618	+	inframe_deletion	In_Frame_Del	DEL	CCGCCGCCGCCGCCGCCGCCA	CCGCCGCCGCCGCCGCCGCCA	-	rs781609559		P-0042552-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			66	49	98	0	ENST00000268489.5:c.10557_10577del	p.Gly3521_Gly3527del	p.G3521_G3527del	ENST00000268489	NM_006885.3	3519	ggTGGCGGCGGCGGCGGCGGCGGc/ggc																																																																															
TP53	7157	MSKCC	GRCh37	17	7574000	7574002	+	missense_variant	Missense_Mutation	ONP	CTC	CTC	TTG			P-0042552-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			486	53	1115	0	ENST00000269305.4:c.1025_1027delinsCAA	p.Arg342_Glu343delinsProLys	p.R342_E343delinsPK	ENST00000269305	NM_001126112.2	342	cGAGag/cCAAag																																																																															
GNA11	2767	MSKCC	GRCh37	19	3110231	3110231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042552-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			527	138	1134	1	ENST00000078429.4:c.221G>T	p.Gly74Val	p.G74V	ENST00000078429	NM_002067.2	74	gGc/gTc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176665275	176665275	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1388537733		P-0042552-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			236	172	467	0	ENST00000439151.2:c.3959G>A	p.Arg1320Gln	p.R1320Q	ENST00000439151	NM_022455.4	1320	cGa/cAa																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs113954997		P-0042984-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			650	122	929	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																															
SPEN	23013	MSKCC	GRCh37	1	16263795	16263796	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042984-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			488	116	1174	0	ENST00000375759.3:c.10165dup	p.Ser3389PhefsTer26	p.S3389Ffs*26	ENST00000375759	NM_015001.2	3388	-/T																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0021727-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			926	697	749	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579533	7579533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021727-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			886	436	1009	0	ENST00000269305.4:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000269305	NM_001126112.2	52	Caa/Taa																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710573	117710573	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs372925583		P-0021727-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			340	260	469	0	ENST00000368508.3:c.1699C>G	p.Leu567Val	p.L567V	ENST00000368508	NM_002944.2	567	Ctg/Gtg																																																																															
AURKB	9212	MSKCC	GRCh37	17	8108280	8108280	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779610702		P-0021727-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			803	391	1132	7	ENST00000585124.1:c.944G>A	p.Arg315Gln	p.R315Q	ENST00000585124	NM_004217.3	315	cGg/cAg																																																																															
MPL	4352	MSKCC	GRCh37	1	43817961	43817961	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs572129852		P-0021727-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			692	464	840	0	ENST00000372470.3:c.1640C>T	p.Ala547Val	p.A547V	ENST00000372470	NM_005373.2	547	gCa/gTa																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123243292	123243292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021727-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			415	884	889	2	ENST00000358487.5:c.2221C>T	p.His741Tyr	p.H741Y	ENST00000358487	NM_000141.4	741	Cat/Tat																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609510	81609510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021727-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			656	302	650	0	ENST00000298171.2:c.1108C>T	p.Leu370Phe	p.L370F	ENST00000298171	NM_000369.2	370	Ctc/Ttc																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678376	88678376	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs752786275		P-0021727-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			632	633	969	1	ENST00000360948.2:c.1160C>A	p.Ala387Asp	p.A387D	ENST00000360948	NM_001012338.2	387	gCc/gAc																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72861944	72861944	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs767865058		P-0021727-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			475	435	657	0	ENST00000325599.8:c.938C>A	p.Thr313Asn	p.T313N	ENST00000325599	NM_018130.2	313	aCt/aAt																																																																															
NSD1	64324	MSKCC	GRCh37	5	176671200	176671200	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs574641900		P-0021727-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			626	562	586	0	ENST00000439151.2:c.4307A>G	p.Tyr1436Cys	p.Y1436C	ENST00000439151	NM_022455.4	1436	tAt/tGt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151878796	151878796	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770722556		P-0021727-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			515	436	729	0	ENST00000262189.6:c.6149C>T	p.Pro2050Leu	p.P2050L	ENST00000262189	NM_170606.2	2050	cCt/cTt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372089	55372089	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021727-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			354	618	592	0	ENST00000297316.4:c.779C>G	p.Ala260Gly	p.A260G	ENST00000297316	NM_022454.3	260	gCt/gGt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250278	110250278	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021727-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			425	742	821	1	ENST00000374672.4:c.397T>A	p.Ser133Thr	p.S133T	ENST00000374672	NM_004235.4	133	Tcg/Acg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0032282-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			341	208	716	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0032282-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			290	118	476	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																															
AR	367	MSKCC	GRCh37	X	66766357	66766383	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCGGCGGCGGCGGCGGC	GGCGGCGGCGGCGGCGGCGGCGGCGGC	-	rs772476406		P-0032282-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			193	87	172	0	ENST00000374690.3:c.1394_1420del	p.Gly465_Gly473del	p.G465_G473del	ENST00000374690	NM_000044.3	457	GGCGGCGGCGGCGGCGGCGGCGGCGGC/-																																																																															
CALR	811	MSKCC	GRCh37	19	13054650	13054658	+	inframe_deletion	In_Frame_Del	DEL	GAGGATGAG	GAGGATGAG	-	rs550353351		P-0032282-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			281	162	884	0	ENST00000316448.5:c.1191_1199del	p.Glu398_Asp400del	p.E398_D400del	ENST00000316448	NM_004343.3	393	GAGGATGAG/-																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907413	32907413	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs75419644		P-0032282-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			43	136	459	0	ENST00000380152.3:c.1798T>C	p.Tyr600His	p.Y600H	ENST00000380152		600	Tat/Cat																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177980	56177982	+	inframe_deletion	In_Frame_Del	DEL	ACC	ACC	-	rs140733770		P-0032282-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			309	248	763	0	ENST00000399503.3:c.2953_2955del	p.Thr985del	p.T985del	ENST00000399503	NM_005921.1	985	ACC/-																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233250	69233250	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs996214975		P-0032282-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			138	136	470	0	ENST00000462284.1:c.1115T>C	p.Ile372Thr	p.I372T	ENST00000462284	NM_002392.5	372	aTa/aCa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187532606	187532606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032282-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			214	206	676	0	ENST00000441802.2:c.9787G>A	p.Ala3263Thr	p.A3263T	ENST00000441802	NM_005245.3	3263	Gca/Aca																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402558	20402558	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs758202295		P-0032282-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			157	266	540	0	ENST00000346618.3:c.95C>G	p.Ser32Cys	p.S32C	ENST00000346618	NM_001949.4	32	tCc/tGc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553135	106553135	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372820369		P-0032282-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			278	115	810	0	ENST00000369096.4:c.1100C>T	p.Ser367Phe	p.S367F	ENST00000369096	NM_001198.3	367	tCt/tTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971033	21971033	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs372481694		P-0032282-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			98	98	692	0	ENST00000304494.5:c.325G>C	p.Ala109Pro	p.A109P	ENST00000304494	NM_000077.4	109	Gcc/Ccc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249896	110249896	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs768059460		P-0032282-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			136	320	1056	0	ENST00000374672.4:c.779C>G	p.Pro260Arg	p.P260R	ENST00000374672	NM_004235.4	260	cCg/cGg																																																																															
SDHB	6390	MSKCC	GRCh37	1	17371298	17371298	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			324	172	915	0	ENST00000375499.3:c.158G>T	p.Gly53Val	p.G53V	ENST00000375499	NM_003000.2	53	gGa/gTa																																																																															
MPL	4352	MSKCC	GRCh37	1	43805112	43805112	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1444234413		P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			120	226	776	0	ENST00000372470.3:c.562A>T	p.Ile188Phe	p.I188F	ENST00000372470	NM_005373.2	188	Att/Ttt																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739836	46739836	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1361241713		P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			207	93	637	0	ENST00000371975.4:c.1637C>T	p.Thr546Met	p.T546M	ENST00000371975	NM_003579.3	546	aCg/aTg																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246093176	246093176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			222	98	611	0	ENST00000388985.4:c.595C>T	p.Pro199Ser	p.P199S	ENST00000388985		199	Ccc/Tcc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18658313	18658313	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			256	114	745	0	ENST00000266497.5:c.3118A>T	p.Met1040Leu	p.M1040L	ENST00000266497		1040	Atg/Ttg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431654	49431654	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773802581		P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			350	191	927	0	ENST00000301067.7:c.9485G>A	p.Gly3162Asp	p.G3162D	ENST00000301067	NM_003482.3	3162	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435198	49435199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755159728		P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			314	105	724	1	ENST00000301067.7:c.6354dup	p.Ala2119ArgfsTer36	p.A2119Rfs*36	ENST00000301067	NM_003482.3	2118	-/C																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865737	57865738	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			423	233	1029	2	ENST00000228682.2:c.3214_3215delinsTT	p.Gly1072Leu	p.G1072L	ENST00000228682	NM_005269.2	1072	GGa/TTa																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432167	121432167	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			461	58	977	0	ENST00000257555.6:c.914C>A	p.Pro305His	p.P305H	ENST00000257555		305	cCt/cAt																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589298	28589298	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			176	22	498	0	ENST00000241453.7:c.2749G>C	p.Glu917Gln	p.E917Q	ENST00000241453	NM_004119.2	917	Gaa/Caa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900718	32900718	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781402		P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			138	117	858	0	ENST00000380152.3:c.599C>T	p.Thr200Ile	p.T200I	ENST00000380152		200	aCa/aTa																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422147	81422147	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			329	40	682	0	ENST00000298171.2:c.123C>A	p.Cys41Ter	p.C41*	ENST00000298171	NM_000369.2	41	tgC/tgA																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609595	81609595	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			316	42	756	0	ENST00000298171.2:c.1193G>T	p.Cys398Phe	p.C398F	ENST00000298171	NM_000369.2	398	tGt/tTt																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43714168	43714168	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs752288363		P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			393	409	1263	0	ENST00000382044.4:c.3985A>G	p.Met1329Val	p.M1329V	ENST00000382044	NM_001141980.1	1329	Atg/Gtg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857635	9857635	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866748846		P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			278	92	597	0	ENST00000330684.3:c.3766G>A	p.Glu1256Lys	p.E1256K	ENST00000330684	NM_001134407.1	1256	Gag/Aag																																																																															
FANCA	2175	MSKCC	GRCh37	16	89877479	89877479	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			290	91	683	1	ENST00000389301.3:c.284G>T	p.Gly95Val	p.G95V	ENST00000389301	NM_000135.2	95	gGc/gTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			319	181	1013	0	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct																																																																															
BRCA1	672	MSKCC	GRCh37	17	41223049	41223049	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs80357465		P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			394	215	1079	0	ENST00000357654.3:c.4882A>G	p.Met1628Val	p.M1628V	ENST00000357654	NM_007294.3	1628	Atg/Gtg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440728	56440728	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			213	187	805	0	ENST00000407977.2:c.490A>G	p.Ile164Val	p.I164V	ENST00000407977		164	Atc/Gtc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78519575	78519575	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			197	79	493	0	ENST00000306801.3:c.146G>C	p.Trp49Ser	p.W49S	ENST00000306801	NM_020761.2	49	tGg/tCg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5231465	5231465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			445	99	975	1	ENST00000357368.4:c.2011G>A	p.Val671Met	p.V671M	ENST00000357368	NM_002850.3	671	Gtg/Atg																																																																															
SOS1	6654	MSKCC	GRCh37	2	39241084	39241084	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730881024		P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			244	62	868	0	ENST00000402219.2:c.1987A>G	p.Ile663Val	p.I663V	ENST00000402219	NM_005633.3	663	Ata/Gta																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			158	66	506	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																															
MITF	4286	MSKCC	GRCh37	3	70008476	70008476	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057517966		P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			158	30	402	0	ENST00000352241.4:c.1066C>T	p.Arg356Ter	p.R356*	ENST00000352241	NM_198159.2	356	Cga/Tga																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89391016	89391016	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			101	186	692	0	ENST00000336596.2:c.1082T>C	p.Ile361Thr	p.I361T	ENST00000336596	NM_005233.5	361	aTc/aCc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			181	123	787	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524897	187524897	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			376	73	907	0	ENST00000441802.2:c.10783A>T	p.Thr3595Ser	p.T3595S	ENST00000441802	NM_005245.3	3595	Aca/Tca																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662683	117662683	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			201	84	729	0	ENST00000368508.3:c.4782G>T	p.Gln1594His	p.Q1594H	ENST00000368508	NM_002944.2	1594	caG/caT																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099799	157099799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375160616		P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			145	216	632	0	ENST00000346085.5:c.736G>A	p.Gly246Ser	p.G246S	ENST00000346085	NM_020732.3	246	Ggc/Agc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151853095	151853095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			183	199	577	0	ENST00000262189.6:c.11860C>T	p.Gln3954Ter	p.Q3954*	ENST00000262189	NM_170606.2	3954	Cag/Tag																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151919113	151919113	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			41	135	566	0	ENST00000262189.6:c.3472C>G	p.Gln1158Glu	p.Q1158E	ENST00000262189	NM_170606.2	1158	Caa/Gaa																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918491	44918491	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0032289-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			97	75	463	0	ENST00000377967.4:c.975-1G>C		p.X325_splice	ENST00000377967	NM_021140.2	325																																																																																
RECQL4	9401	MSKCC	GRCh37	8	145738410	145738411	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGTGCA	rs758738837		P-0037659-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			640	452	1193	0	ENST00000428558.2:c.2569_2574dup	p.Cys857_Thr858dup	p.C857_T858dup	ENST00000428558	NM_004260.3	857	-/TGCACC																																																																															
STK11	6794	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs137853076		P-0037659-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			755	89	1313	0	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag																																																																															
RET	5979	MSKCC	GRCh37	10	43595999	43595999	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs145633958		P-0037659-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			437	406	1215	0	ENST00000355710.3:c.166C>A	p.Leu56Met	p.L56M	ENST00000355710	NM_020975.4	56	Ctg/Atg																																																																															
CBL	867	MSKCC	GRCh37	11	119077232	119077233	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAC	rs373212940		P-0037659-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			387	199	960	0	ENST00000264033.4:c.125_127dup	p.His42dup	p.H42dup	ENST00000264033	NM_005188.3	42	-/CAC																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0037659-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			464	54	626	1	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600008	10600008	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037659-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			643	70	1295	1	ENST00000171111.5:c.1568G>T	p.Gly523Val	p.G523V	ENST00000171111	NM_203500.1	523	gGg/gTg																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912361	32912361	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41293485		P-0037659-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			260	211	570	1	ENST00000380152.3:c.3869G>A	p.Cys1290Tyr	p.C1290Y	ENST00000380152		1290	tGc/tAc																																																																															
RHOA	387	MSKCC	GRCh37	3	49397767	49397767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037659-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			357	367	966	0	ENST00000418115.1:c.457G>A	p.Ala153Thr	p.A153T	ENST00000418115	NM_001664.2	153	Gct/Act																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073676	8073676	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs537328516		P-0037659-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			250	205	693	0	ENST00000377482.5:c.983G>C	p.Ser328Thr	p.S328T	ENST00000377482	NM_018948.3	328	aGt/aCt																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845920	156845920	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037659-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			819	107	1303	0	ENST00000524377.1:c.1550G>T	p.Gly517Val	p.G517V	ENST00000524377	NM_002529.3	517	gGg/gTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230652	46230652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037659-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			644	36	918	0	ENST00000334344.6:c.901G>A	p.Gly301Ser	p.G301S	ENST00000334344	NM_152641.2	301	Ggc/Agc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103504497	103504497	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1384929710		P-0037659-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			163	169	511	0	ENST00000355739.4:c.118A>G	p.Lys40Glu	p.K40E	ENST00000355739	NM_000123.3	40	Aaa/Gaa																																																																															
FLCN	201163	MSKCC	GRCh37	17	17125960	17125960	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs558699420		P-0037659-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			332	289	1020	0	ENST00000285071.4:c.634C>A	p.Gln212Lys	p.Q212K	ENST00000285071	NM_144997.5	212	Cag/Aag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41280649	41280649	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037659-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			679	49	1188	0	ENST00000349496.5:c.2162C>G	p.Ser721Cys	p.S721C	ENST00000349496	NM_001904.3	721	tCt/tGt																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72881571	72881571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037659-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			473	38	740	0	ENST00000325599.8:c.548G>T	p.Arg183Ile	p.R183I	ENST00000325599	NM_018130.2	183	aGa/aTa																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134872993	134872993	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0037659-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			447	34	861	0	ENST00000398015.3:c.1298-1G>C		p.X433_splice	ENST00000398015	NM_004441.4	433																																																																																
TET2	54790	MSKCC	GRCh37	4	106197362	106197362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037659-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			301	44	593	0	ENST00000380013.4:c.5695C>T	p.Leu1899Phe	p.L1899F	ENST00000380013	NM_001127208.2	1899	Ctc/Ttc																																																																															
NSD1	64324	MSKCC	GRCh37	5	176722407	176722407	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs144398734		P-0037659-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			417	41	583	0	ENST00000439151.2:c.8038G>T	p.Ala2680Ser	p.A2680S	ENST00000439151	NM_022455.4	2680	Gct/Tct																																																																															
STAG2	10735	MSKCC	GRCh37	X	123196752	123196752	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0037659-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			291	28	345	0	ENST00000218089.9:c.1639G>T	p.Val547Leu	p.V547L	ENST00000218089	NM_001042749.1	547	Gtg/Ttg																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152861467	152861467	+	synonymous_variant	Silent	SNP	G	G	A			P-0037659-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			234	25	292	0	ENST00000406277.2:c.285C>T	p.Ser95=	p.S95=	ENST00000406277	NM_152274.4	95	tcC/tcT																																																																															
CBL	867	MSKCC	GRCh37	11	119148874	119148874	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0042970-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			255	91	535	0	ENST00000264033.4:c.1096-2A>T		p.X366_splice	ENST00000264033	NM_005188.3	366																																																																																
PRKD1	5587	MSKCC	GRCh37	14	30066936	30066936	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749621467		P-0042970-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			298	244	876	0	ENST00000331968.5:c.2195G>A	p.Arg732Gln	p.R732Q	ENST00000331968	NM_002742.2	732	cGg/cAg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95579487	95579487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042970-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			457	93	725	0	ENST00000343455.3:c.1982G>T	p.Gly661Val	p.G661V	ENST00000343455	NM_177438.2	661	gGt/gTt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2130259	2130259	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45448801		P-0042970-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			463	230	1163	1	ENST00000219476.3:c.3491C>T	p.Ala1164Val	p.A1164V	ENST00000219476	NM_000548.3	1164	gCg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778193	3778193	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042970-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			388	183	1265	0	ENST00000262367.5:c.6855del	p.Asn2286ThrfsTer16	p.N2286Tfs*16	ENST00000262367	NM_004380.2	2285	ccC/cc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220580	1220590	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GCACTGCACCC	GCACTGCACCC	-			P-0042970-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			351	77	1014	0	ENST00000326873.7:c.599_609del	p.Ala200ValfsTer62	p.A200Vfs*62	ENST00000326873	NM_000455.4	200	GCACTGCACCCg/g																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602750	10602751	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042970-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			624	115	1390	0	ENST00000171111.5:c.827dup	p.Leu276PhefsTer74	p.L276Ffs*74	ENST00000171111	NM_203500.1	276	ttg/ttTg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15354005	15354007	+	inframe_deletion	In_Frame_Del	DEL	GCA	GCA	-			P-0042970-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			122	13	253	0	ENST00000263377.2:c.2873_2875del	p.Leu958del	p.L958del	ENST00000263377	NM_058243.2	958	cTGCcg/ccg																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099799	157099799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375160616		P-0042970-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			98	155	549	1	ENST00000346085.5:c.736G>A	p.Gly246Ser	p.G246S	ENST00000346085	NM_020732.3	246	Ggc/Agc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100727	8100728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs771019738		P-0042972-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			683	110	1216	0	ENST00000346208.3:c.708dup	p.Ser237GlnfsTer66	p.S237Qfs*66	ENST00000346208		234	ttc/ttCc																																																																															
POLE	5426	MSKCC	GRCh37	12	133220476	133220476	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372901803		P-0042972-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			426	404	1096	0	ENST00000320574.5:c.4237G>A	p.Glu1413Lys	p.E1413K	ENST00000320574	NM_006231.2	1413	Gag/Aag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249020	55249022	+	missense_variant	Missense_Mutation	ONP	ACG	ACG	TCA			P-0042972-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			591	139	1047	0	ENST00000275493.2:c.2318_2320delinsTCA	p.His773_Val774delinsLeuMet	p.H773_V774delinsLM	ENST00000275493	NM_005228.3	773	cACGtg/cTCAtg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32187367	32187367	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0042972-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			771	76	967	0	ENST00000375023.3:c.1510+2T>C		p.X504_splice	ENST00000375023	NM_004557.3	504																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0042991-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			406	97	747	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0042991-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			384	65	769	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
EP300	2033	MSKCC	GRCh37	22	41574511	41574513	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-	rs533875300		P-0042991-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			318	321	1257	0	ENST00000263253.7:c.6798_6800del	p.Gln2268del	p.Q2268del	ENST00000263253	NM_001429.3	2266	CAG/-																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1317433	1317433	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0042991-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			565	156	1021	0				ENST00000381566																																																																																		
RET	5979	MSKCC	GRCh37	10	43623698	43623698	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780813		P-0042991-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			246	299	884	0	ENST00000355710.3:c.3326T>C	p.Met1109Thr	p.M1109T	ENST00000355710	NM_020975.4	1109	aTg/aCg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	404855	404855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042991-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			678	64	958	0	ENST00000399788.2:c.4339G>A	p.Glu1447Lys	p.E1447K	ENST00000399788	NM_001042603.1	1447	Gaa/Aaa																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56490914	56490914	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1342557300		P-0042991-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			709	78	999	0	ENST00000267101.3:c.2360C>T	p.Thr787Ile	p.T787I	ENST00000267101	NM_001982.3	787	aCt/aTt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646249	3646249	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs544935776		P-0042991-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			408	304	1372	2	ENST00000294008.3:c.1829A>G	p.Gln610Arg	p.Q610R	ENST00000294008	NM_032444.2	610	cAg/cGg																																																																															
RNF43	54894	MSKCC	GRCh37	17	56438238	56438238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042991-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			519	116	1074	0	ENST00000407977.2:c.755G>T	p.Cys252Phe	p.C252F	ENST00000407977		252	tGc/tTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221948	1221948	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0042991-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			494	137	1147	2	ENST00000326873.7:c.863G>T	p.Gly288Val	p.G288V	ENST00000326873	NM_000455.4	288	gGg/gTg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222937	5222937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042991-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			372	92	940	0	ENST00000357368.4:c.2866G>T	p.Ala956Ser	p.A956S	ENST00000357368	NM_002850.3	956	Gcc/Tcc																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602512	10602512	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042991-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			468	152	1220	0	ENST00000171111.5:c.1066del	p.Ala356ArgfsTer44	p.A356Rfs*44	ENST00000171111	NM_203500.1	356	Gcg/cg																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526584	106526584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042991-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			348	98	650	0	ENST00000359195.3:c.2877C>A	p.Asn959Lys	p.N959K	ENST00000359195	NM_002649.2	959	aaC/aaA																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0047740-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			571	173	1248	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243835	41243835	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28897688		P-0047740-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			232	290	732	0	ENST00000357654.3:c.3713C>T	p.Pro1238Leu	p.P1238L	ENST00000357654	NM_007294.3	1238	cCt/cTt																																																																															
STK40	83931	MSKCC	GRCh37	1	36814312	36814312	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1300277409		P-0047740-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			240	243	832	0	ENST00000373129.3:c.728A>G	p.Asp243Gly	p.D243G	ENST00000373129	NM_032017.1	243	gAc/gGc																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911604	134911604	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371576789		P-0047740-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			195	202	758	1	ENST00000398015.3:c.2069G>A	p.Ser690Asn	p.S690N	ENST00000398015	NM_004441.4	690	aGt/aAt																																																																															
HIST1H3A	8350	MSKCC	GRCh37	6	26021102	26021102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047740-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			240	197	715	0	ENST00000357647.3:c.385C>T	p.Arg129Cys	p.R129C	ENST00000357647	NM_003529.2	129	Cgc/Tgc																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841079	15841079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047740-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			510	98	741	0	ENST00000307771.7:c.1163C>T	p.Ser388Phe	p.S388F	ENST00000307771	NM_005089.3	388	tCc/tTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0009993-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			396	262	426	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0009993-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			665	131	488	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112162803	112162803	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0009993-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			479	110	345	0	ENST00000257430.4:c.1409-2A>G		p.X470_splice	ENST00000257430	NM_000038.5	470																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27057941	27057941	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs761975620		P-0037107-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			649	308	1119	0	ENST00000324856.7:c.1649C>A	p.Pro550His	p.P550H	ENST00000324856	NM_006015.4	550	cCc/cAc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640784	3640785	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT	rs863224277		P-0037107-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			483	615	1133	46	ENST00000294008.3:c.2854_2855delinsAT	p.Ala952Met	p.A952M	ENST00000294008	NM_032444.2	952	GCg/ATg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534431	63534431	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037107-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			974	165	1166	0	ENST00000307078.5:c.1090C>G	p.Pro364Ala	p.P364A	ENST00000307078	NM_004655.3	364	Ccc/Gcc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534448	63534448	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037107-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			900	148	1069	0	ENST00000307078.5:c.1073T>C	p.Leu358Pro	p.L358P	ENST00000307078	NM_004655.3	358	cTg/cCg																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66526432	66526432	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037107-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			760	250	723	0	ENST00000358598.2:c.988C>G	p.Leu330Val	p.L330V	ENST00000358598	NM_212471.2	330	Ctg/Gtg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36219017	36219017	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754041894		P-0037107-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			330	488	1314	0	ENST00000222270.7:c.4516G>A	p.Gly1506Ser	p.G1506S	ENST00000222270	NM_014727.1	1506	Ggc/Agc																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212812268	212812268	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754487821		P-0037107-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			229	156	577	0	ENST00000342788.4:c.308G>A	p.Arg103His	p.R103H	ENST00000342788	NM_005235.2	103	cGc/cAc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32191658	32191659	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGCAGC	rs752055480		P-0037107-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			668	282	1226	34	ENST00000375023.3:c.42_47dup	p.Leu15_Leu16dup	p.L15_L16dup	ENST00000375023	NM_004557.3	15	cta/ctGCTGCTa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0037107-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			444	144	661	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270607	98270607	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs779791579		P-0037107-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			12	20	58	0	ENST00000331920.6:c.37C>G	p.Arg13Gly	p.R13G	ENST00000331920	NM_000264.3	13	Cgc/Ggc																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399516	139399516	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs533102436		P-0037107-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			530	374	1461	0	ENST00000277541.6:c.4627G>A	p.Gly1543Arg	p.G1543R	ENST00000277541	NM_017617.3	1543	Ggg/Agg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0040849-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			385	436	1274	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																															
RB1	5925	MSKCC	GRCh37	13	49030465	49030466	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0040849-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			272	191	611	0	ENST00000267163.4:c.1941_1942del	p.Ser648ThrfsTer4	p.S648Tfs*4	ENST00000267163	NM_000321.2	647	cTT/c																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637762	176637762	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520339		P-0040849-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			559	347	1178	1	ENST00000439151.2:c.2362C>T	p.Arg788Ter	p.R788*	ENST00000439151	NM_022455.4	788	Cga/Tga																																																																															
KDM5A	5927	MSKCC	GRCh37	12	498224	498224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040849-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			261	14	552	0	ENST00000399788.2:c.34G>A	p.Glu12Lys	p.E12K	ENST00000399788	NM_001042603.1	12	Gag/Aag																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101908874	101908874	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1389908628		P-0040849-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			342	452	939	1	ENST00000374994.4:c.1238G>A	p.Arg413Gln	p.R413Q	ENST00000374994	NM_004612.2	413	cGa/cAa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445553	49445553	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs749071113		P-0040849-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			674	220	1662	0	ENST00000301067.7:c.1913C>G	p.Pro638Arg	p.P638R	ENST00000301067	NM_003482.3	638	cCa/cGa																																																																															
MCL1	4170	MSKCC	GRCh37	1	150550727	150550727	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1223742436		P-0040849-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			246	319	728	0	ENST00000369026.2:c.929G>A	p.Arg310Lys	p.R310K	ENST00000369026	NM_021960.4	310	aGa/aAa																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846337	156846337	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748133401		P-0040849-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			401	580	1444	2	ENST00000524377.1:c.1778G>A	p.Arg593Gln	p.R593Q	ENST00000524377	NM_002529.3	593	cGg/cAg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421871	49421871	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040849-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			374	383	1434	0	ENST00000301067.7:c.14436del	p.Asn4813ThrfsTer45	p.N4813Tfs*45	ENST00000301067	NM_003482.3	4812	ccC/cc																																																																															
EP300	2033	MSKCC	GRCh37	22	41556675	41556675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040849-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			417	128	862	0	ENST00000263253.7:c.3620A>G	p.Glu1207Gly	p.E1207G	ENST00000263253	NM_001429.3	1207	gAg/gGg																																																																															
MST1	4485	MSKCC	GRCh37	3	49723116	49723117	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040849-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			504	27	945	2	ENST00000449682.2:c.1299_1300delinsTT	p.Arg434Trp	p.R434W	ENST00000449682	NM_020998.3	433	tgCCgg/tgTTgg																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280131	66280131	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040849-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			303	168	522	0	ENST00000273854.3:c.1558T>C	p.Ser520Pro	p.S520P	ENST00000273854	NM_004439.5	520	Tct/Cct																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045936	26045936	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs777916771		P-0040849-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			643	99	936	0	ENST00000540144.1:c.298T>C	p.Tyr100His	p.Y100H	ENST00000540144	NM_003531.2	100	Tac/Cac																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874106	151874106	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0040849-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			495	294	925	0	ENST00000262189.6:c.8432C>G	p.Ser2811Ter	p.S2811*	ENST00000262189	NM_170606.2	2811	tCa/tGa																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0042090-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			358	218	813	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32191658	32191659	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGC	rs752055480		P-0042090-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			604	273	1081	66	ENST00000375023.3:c.45_47dup	p.Leu16dup	p.L16dup	ENST00000375023	NM_004557.3	16	cta/ctGCTa																																																																															
MGA	23269	MSKCC	GRCh37	15	42003464	42003464	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs377359568		P-0042090-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			346	302	1064	0	ENST00000219905.7:c.3001T>G	p.Cys1001Gly	p.C1001G	ENST00000219905	NM_001164273.1	1001	Tgt/Ggt																																																																															
ATM	472	MSKCC	GRCh37	11	108186591	108186592	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042090-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			78	294	673	0	ENST00000278616.4:c.6049dup	p.Ser2017LysfsTer16	p.S2017Kfs*16	ENST00000278616	NM_000051.3	2016	-/A																																																																															
NUP93	9688	MSKCC	GRCh37	16	56867231	56867231	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs528775471		P-0042090-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			416	284	910	1	ENST00000308159.5:c.1450C>T	p.Arg484Trp	p.R484W	ENST00000308159	NM_014669.4	484	Cgg/Tgg																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250605	26250605	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042090-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			452	269	1103	0	ENST00000446824.2:c.229C>A	p.Gln77Lys	p.Q77K	ENST00000446824	NM_021018.2	77	Cag/Aag																																																																															
ABL1	25	MSKCC	GRCh37	9	133760065	133760065	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042090-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			393	399	1332	1	ENST00000318560.5:c.2388G>C	p.Glu796Asp	p.E796D	ENST00000318560	NM_005157.4	796	gaG/gaC																																																																															
TSC1	7248	MSKCC	GRCh37	9	135778098	135778098	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs118203670		P-0042090-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			316	305	995	0	ENST00000298552.3:c.2285A>G	p.Asn762Ser	p.N762S	ENST00000298552	NM_001162426.1	762	aAt/aGt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0062492-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			485	141	856	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
AGO2	27161	MSKCC	GRCh37	8	141549546	141549546	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1275131569		P-0062492-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			664	237	909	0	ENST00000220592.5:c.2042A>G	p.His681Arg	p.H681R	ENST00000220592	NM_012154.3	681	cAc/cGc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047540-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			442	427	655	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5223251	5223251	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs199604489		P-0047540-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			65	691	1153	0	ENST00000357368.4:c.2552G>T	p.Arg851Leu	p.R851L	ENST00000357368	NM_002850.3	851	cGc/cTc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906593	32906593	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28897706		P-0047540-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			154	382	544	0	ENST00000380152.3:c.978C>A	p.Ser326Arg	p.S326R	ENST00000380152		326	agC/agA																																																																															
APC	324	MSKCC	GRCh37	5	112175378	112175378	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0047540-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			98	174	553	0	ENST00000257430.4:c.4087A>T	p.Lys1363Ter	p.K1363*	ENST00000257430	NM_000038.5	1363	Aaa/Taa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157488272	157488272	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs139620600		P-0047540-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			248	421	844	0	ENST00000346085.5:c.2978A>T	p.Gln993Leu	p.Q993L	ENST00000346085	NM_020732.3	993	cAg/cTg																																																																															
FAT1	2195	MSKCC	GRCh37	4	187557891	187557891	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200242253		P-0047540-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			378	261	962	1	ENST00000441802.2:c.3820G>A	p.Val1274Ile	p.V1274I	ENST00000441802	NM_005245.3	1274	Gtc/Atc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288636	33288636	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs776342399		P-0047540-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			437	164	846	0	ENST00000374542.5:c.916C>T	p.Arg306Ter	p.R306*	ENST00000374542	NM_001141970.1	306	Cga/Tga																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81990399	81990399	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199530350		P-0047540-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			428	401	1069	0	ENST00000359376.3:c.3670C>T	p.Arg1224Cys	p.R1224C	ENST00000359376	NM_002661.3	1224	Cgc/Tgc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527740	157527740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047540-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			614	245	947	0	ENST00000346085.5:c.5465G>A	p.Gly1822Asp	p.G1822D	ENST00000346085	NM_020732.3	1822	gGc/gAc																																																																															
TET1	80312	MSKCC	GRCh37	10	70446120	70446120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047540-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			276	127	687	0	ENST00000373644.4:c.5060C>T	p.Thr1687Ile	p.T1687I	ENST00000373644	NM_030625.2	1687	aCc/aTc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118391552	118391552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047540-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			156	222	618	0	ENST00000534358.1:c.11465G>A	p.Arg3822His	p.R3822H	ENST00000534358	NM_005933.3	3822	cGc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446810	49446810	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs375948181		P-0047540-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			544	538	1032	0	ENST00000301067.7:c.1000A>G	p.Asn334Asp	p.N334D	ENST00000301067	NM_003482.3	334	Aat/Gat																																																																															
TSC2	7249	MSKCC	GRCh37	16	2121529	2121529	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1212638240		P-0047540-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			651	353	1170	0	ENST00000219476.3:c.1858C>G	p.Leu620Val	p.L620V	ENST00000219476	NM_000548.3	620	Ctg/Gtg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857206	9857206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047540-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			289	424	929	0	ENST00000330684.3:c.4195A>G	p.Ser1399Gly	p.S1399G	ENST00000330684	NM_001134407.1	1399	Agc/Ggc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028648	12028649	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGAT			P-0047540-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			219	293	773	0	ENST00000353533.5:c.852_855dup	p.Val286Ter	p.V286*	ENST00000353533	NM_003010.3	284	tat/taTGATt																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120309	70120310	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCACA			P-0047540-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			361	910	1535	0	ENST00000245479.2:c.1312_1316dup	p.Gln439HisfsTer33	p.Q439Hfs*33	ENST00000245479	NM_000346.3	437	-/TCACA																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247160	153247160	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0047540-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			200	99	423	0	ENST00000281708.4:c.1642C>T	p.Gln548Ter	p.Q548*	ENST00000281708	NM_033632.3	548	Cag/Tag																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8340387	8340387	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047540-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			231	475	958	0	ENST00000356435.5:c.5209T>G	p.Ser1737Ala	p.S1737A	ENST00000356435		1737	Tcc/Gcc																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87563404	87563404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047540-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			380	341	937	0	ENST00000277120.3:c.1792C>T	p.Arg598Cys	p.R598C	ENST00000277120		598	Cgc/Tgc																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838008	156838008	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047540-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			998	324	1445	0	ENST00000524377.1:c.541G>T	p.Gly181Trp	p.G181W	ENST00000524377	NM_002529.3	181	Ggg/Tgg																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000066-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			296	149	135	0	ENST00000206249.3:c.1607T>A	p.Leu536His	p.L536H	ENST00000206249	NM_000125.3	536	cTc/cAc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000066-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			348	108	134	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																															
CD276	80381	MSKCC	GRCh37	15	73995285	73995285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000066-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			36	10	11	0	ENST00000318443.5:c.591C>A	p.Asn197Lys	p.N197K	ENST00000318443	NM_001024736.1	197	aaC/aaA																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0000066-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			689	62	391	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																															
BARD1	580	MSKCC	GRCh37	2	215645503	215645523	+	inframe_deletion	In_Frame_Del	DEL	TGGTGAAGAACATTCAGGCAA	TGGTGAAGAACATTCAGGCAA	-	rs28997575		P-0046967-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			361	262	1042	0	ENST00000260947.4:c.1075_1095del	p.Leu359_Pro365del	p.L359_P365del	ENST00000260947	NM_000465.2	359	TTGCCTGAATGTTCTTCACCA/-																																																																															
BCL6	604	MSKCC	GRCh37	3	187442788	187442788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046967-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			598	215	1014	0	ENST00000232014.4:c.1918C>T	p.Arg640Trp	p.R640W	ENST00000232014	NM_001130845.1	640	Cgg/Tgg																																																																															
ERG	2078	MSKCC	GRCh37	21	39795352	39795352	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372598575		P-0046967-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			449	565	1209	2	ENST00000288319.7:c.368G>A	p.Arg123His	p.R123H	ENST00000288319	NM_182918.3	123	cGc/cAc																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016549	12016549	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0046967-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			103	83	403	0	ENST00000353533.5:c.686-1G>A		p.X229_splice	ENST00000353533	NM_003010.3	229																																																																																
NKX2-1	7080	MSKCC	GRCh37	14	36986875	36986876	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCCCCCGCC	rs577015120		P-0046967-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			476	52	945	0	ENST00000354822.5:c.805_813dup	p.Gly269_Gly271dup	p.G269_G271dup	ENST00000354822	NM_001079668.2	269	-/GGCGGGGGC																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15989595	15989595	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0046967-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			152	89	431	0	ENST00000268712.3:c.3177+1G>A		p.X1059_splice	ENST00000268712	NM_006311.3	1059																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139404319	139404319	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs756174213		P-0046967-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			649	526	1760	0	ENST00000277541.6:c.2835C>G	p.Asp945Glu	p.D945E	ENST00000277541	NM_017617.3	945	gaC/gaG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0002804-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			249	378	273	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0002804-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			350	247	209	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																															
IGF1	3479	MSKCC	GRCh37	12	102811743	102811743	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002804-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			955	130	330	0	ENST00000307046.8:c.441G>T	p.Gln147His	p.Q147H	ENST00000307046	NM_001111285.1	147	caG/caT																																																																															
RB1	5925	MSKCC	GRCh37	13	49033862	49033862	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024475-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			316	441	494	0	ENST00000267163.4:c.1999G>T	p.Glu667Ter	p.E667*	ENST00000267163	NM_000321.2	667	Gaa/Taa																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30102145	30102145	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024475-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			460	174	343	0	ENST00000331968.5:c.1322G>T	p.Arg441Leu	p.R441L	ENST00000331968	NM_002742.2	441	cGg/cTg																																																																															
AKT1	207	MSKCC	GRCh37	14	105241340	105241340	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0024475-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			687	325	511	0	ENST00000349310.3:c.568G>C	p.Asp190His	p.D190H	ENST00000349310	NM_001014432.1	190	Gac/Cac																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67358664	67358664	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024475-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			645	324	519	0	ENST00000327367.4:c.172C>T	p.Gln58Ter	p.Q58*	ENST00000327367	NM_005902.3	58	Cag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7579358	7579378	+	inframe_deletion	In_Frame_Del	DEL	CGGAAACCGTAGCTGCCCTGG	CGGAAACCGTAGCTGCCCTGG	-			P-0024475-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			429	392	616	0	ENST00000269305.4:c.309_329del	p.Gln104_Arg110del	p.Q104_R110del	ENST00000269305	NM_001126112.2	103	taCCAGGGCAGCTACGGTTTCCGt/tat																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682401	37682401	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1428070319		P-0024475-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			900	69	498	0	ENST00000447079.4:c.3592G>C	p.Glu1198Gln	p.E1198Q	ENST00000447079	NM_015083.1	1198	Gaa/Caa																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39584327	39584327	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866408102		P-0024475-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			284	42	205	0	ENST00000262039.4:c.992C>A	p.Thr331Lys	p.T331K	ENST00000262039	NM_002647.2	331	aCa/aAa																																																																															
CD79A	973	MSKCC	GRCh37	19	42383185	42383185	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782563209		P-0024475-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			1769	115	648	1	ENST00000221972.3:c.205G>A	p.Val69Ile	p.V69I	ENST00000221972	NM_021601.3	69	Gtc/Atc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919078	50919078	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024475-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			467	449	403	1	ENST00000440232.2:c.2815T>C	p.Ser939Pro	p.S939P	ENST00000440232	NM_002691.3	939	Tcg/Ccg																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52716247	52716247	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs780984008		P-0024475-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			1055	92	545	0	ENST00000322088.6:c.691A>G	p.Ile231Val	p.I231V	ENST00000322088	NM_014225.5	231	Atc/Gtc																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113269	209113269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024475-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			663	285	486	0	ENST00000345146.2:c.238G>A	p.Glu80Lys	p.E80K	ENST00000345146	NM_005896.2	80	Gag/Aag																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911646	134911646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024475-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			561	278	351	0	ENST00000398015.3:c.2111C>T	p.Ala704Val	p.A704V	ENST00000398015	NM_004441.4	704	gCa/gTa																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584769	187584769	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0024475-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			209	134	274	0	ENST00000441802.2:c.3266-2A>G		p.X1089_splice	ENST00000441802	NM_005245.3	1089																																																																																
FAT1	2195	MSKCC	GRCh37	4	187628289	187628289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779751062		P-0024475-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			319	537	567	1	ENST00000441802.2:c.2693G>A	p.Arg898Lys	p.R898K	ENST00000441802	NM_005245.3	898	aGg/aAg																																																																															
APC	324	MSKCC	GRCh37	5	112173600	112173600	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024475-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			319	48	322	0	ENST00000257430.4:c.2309C>A	p.Ser770Ter	p.S770*	ENST00000257430	NM_000038.5	770	tCa/tAa																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048784	180048784	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024475-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			910	95	605	1	ENST00000261937.6:c.1778T>A	p.Leu593His	p.L593H	ENST00000261937	NM_182925.4	593	cTc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100318	157100318	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024475-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			541	30	322	0	ENST00000346085.5:c.1255C>G	p.Leu419Val	p.L419V	ENST00000346085	NM_020732.3	419	Ctc/Gtc																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245900	41245900	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs56012641		P-0032847-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			324	338	1229	0	ENST00000357654.3:c.1648A>C	p.Asn550His	p.N550H	ENST00000357654	NM_007294.3	550	Aat/Cat																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246092	41246092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs55906931		P-0032847-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			331	335	1287	0	ENST00000357654.3:c.1456T>C	p.Phe486Leu	p.F486L	ENST00000357654	NM_007294.3	486	Ttt/Ctt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41251803	41251803	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs56187033		P-0032847-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			284	244	1058	0	ENST00000357654.3:c.536A>G	p.Tyr179Cys	p.Y179C	ENST00000357654	NM_007294.3	179	tAc/tGc																																																																															
NF1	4763	MSKCC	GRCh37	17	29587402	29587402	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs876658776		P-0032847-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			266	292	838	1	ENST00000358273.4:c.4446A>G	p.Ile1482Met	p.I1482M	ENST00000358273	NM_001042492.2	1482	atA/atG																																																																															
NF1	4763	MSKCC	GRCh37	17	29665117	29665117	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876658775		P-0032847-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			396	345	1192	0	ENST00000358273.4:c.6779C>T	p.Ser2260Phe	p.S2260F	ENST00000358273	NM_001042492.2	2260	tCt/tTt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120491645	120491645	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs782798700		P-0032847-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			174	169	572	0	ENST00000256646.2:c.2584G>T	p.Ala862Ser	p.A862S	ENST00000256646	NM_024408.3	862	Gct/Tct																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246298	41246298	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs80357113		P-0032847-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			288	303	1186	0	ENST00000357654.3:c.1250A>G	p.Asn417Ser	p.N417S	ENST00000357654	NM_007294.3	417	aAt/aGt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48025782	48025782	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1800938		P-0032847-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			111	83	280	0	ENST00000234420.5:c.660A>C	p.Glu220Asp	p.E220D	ENST00000234420	NM_000179.2	220	gaA/gaC																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185190852	185190852	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032847-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			264	167	1130	0	ENST00000265026.3:c.1733C>A	p.Ser578Tyr	p.S578Y	ENST00000265026	NM_004721.4	578	tCt/tAt																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127912088	127912088	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032847-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			281	20	687	0	ENST00000373547.4:c.782A>C	p.Tyr261Ser	p.Y261S	ENST00000373547	NM_002721.4	261	tAc/tCc																																																																															
PGR	5241	MSKCC	GRCh37	11	100999134	100999134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034292-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			463	218	678	0	ENST00000325455.5:c.668A>G	p.Glu223Gly	p.E223G	ENST00000325455	NM_001202474.3	223	gAg/gGg																																																																															
CARM1	10498	MSKCC	GRCh37	19	11031520	11031520	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034292-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			540	208	737	0	ENST00000327064.4:c.1435A>G	p.Thr479Ala	p.T479A	ENST00000327064	NM_199141.1	479	Aca/Gca																																																																															
UPF1	5976	MSKCC	GRCh37	19	18963028	18963028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034292-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			523	184	665	0	ENST00000262803.5:c.895G>A	p.Ala299Thr	p.A299T	ENST00000262803	NM_002911.3	299	Gcc/Acc																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128268655	128268655	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370425781		P-0034292-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			394	265	583	5	ENST00000265960.3:c.1000G>A	p.Ala334Thr	p.A334T	ENST00000265960	NM_001006617.1	334	Gcc/Acc																																																																															
ATXN7	6314	MSKCC	GRCh37	3	63898390	63898391	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCC			P-0059975-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			91	11	324	0	ENST00000398590.3:c.123_125dup	p.Pro43dup	p.P43dup	ENST00000398590	NM_001177387.1	43	cag/caGCCg																																																																															
RET	5979	MSKCC	GRCh37	10	43615616	43615627	+	inframe_deletion	In_Frame_Del	DEL	GTTTATGAAGAG	GTTTATGAAGAG	-			P-0059975-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			145	53	690	0	ENST00000355710.3:c.2696_2707del	p.Val899_Glu902del	p.V899_E902del	ENST00000355710	NM_020975.4	899	GTTTATGAAGAG/-																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226359	2226359	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0059975-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			119	73	824	0	ENST00000398665.3:c.3839A>C	p.Glu1280Ala	p.E1280A	ENST00000398665	NM_032482.2	1280	gAg/gCg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210896	36210896	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0059975-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			135	105	814	2	ENST00000222270.7:c.647C>G	p.Pro216Arg	p.P216R	ENST00000222270	NM_014727.1	216	cCc/cGc																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158732	26158732	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0059975-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			83	38	336	0	ENST00000289316.2:c.335T>C	p.Val112Ala	p.V112A	ENST00000289316	NM_138720.2	112	gTg/gCg																																																																															
FANCC	2176	MSKCC	GRCh37	9	97864024	97864024	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs104886457		P-0059975-T01-IM7									Unknown	UNKNOWN				MSK-IMPACT			135	12	1051	0	ENST00000289081.3:c.1642C>T	p.Arg548Ter	p.R548*	ENST00000289081	NM_000136.2	548	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55221822	55221822	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149840192		P-0057078-T03-IM7									Unknown	UNKNOWN				MSK-IMPACT			185	82	1334	0	ENST00000275493.2:c.866C>T	p.Ala289Val	p.A289V	ENST00000275493	NM_005228.3	289	gCc/gTc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057078-T03-IM7									Unknown	UNKNOWN				MSK-IMPACT			103	68	748	0	ENST00000263967.3:c.3132T>A	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaA																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161221	56161221	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781300314		P-0057078-T03-IM7									Unknown	UNKNOWN				MSK-IMPACT			91	91	549	0	ENST00000399503.3:c.1090C>T	p.Arg364Trp	p.R364W	ENST00000399503	NM_005921.1	364	Cgg/Tgg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861144	57861144	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373249560		P-0057078-T03-IM7									Unknown	UNKNOWN				MSK-IMPACT			182	234	910	1	ENST00000228682.2:c.941G>A	p.Arg314His	p.R314H	ENST00000228682	NM_005269.2	314	cGc/cAc																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845426	151845426	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1342954023		P-0057078-T03-IM7									Unknown	UNKNOWN				MSK-IMPACT			187	128	1073	0	ENST00000262189.6:c.13586G>A	p.Arg4529His	p.R4529H	ENST00000262189	NM_170606.2	4529	cGt/cAt																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589192	67589192	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057078-T03-IM7									Unknown	UNKNOWN				MSK-IMPACT			79	48	439	0	ENST00000274335.5:c.1180G>T	p.Asp394Tyr	p.D394Y	ENST00000274335		394	Gac/Tac																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78867557	78867557	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150308688		P-0029409-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			870	695	1076	0	ENST00000306801.3:c.2293G>A	p.Ala765Thr	p.A765T	ENST00000306801	NM_020761.2	765	Gcc/Acc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717769	89717770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029409-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			180	169	541	0	ENST00000371953.3:c.800dup	p.Asp268GlyfsTer30	p.D268Gfs*30	ENST00000371953	NM_000314.4	265	cta/ctAa																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822010	72822033	+	inframe_deletion	In_Frame_Del	DEL	GCTGCTGCTGCTGCTGTAGTTGCC	GCTGCTGCTGCTGCTGTAGTTGCC	-	rs727502780		P-0029409-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			139	183	521	0	ENST00000268489.5:c.10142_10165del	p.Arg3381_Gln3388del	p.R3381_Q3388del	ENST00000268489	NM_006885.3	3381	cGGCAACTACAGCAGCAGCAGCAGCaa/caa																																																																															
EP300	2033	MSKCC	GRCh37	22	41546186	41546186	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs564126491		P-0029409-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			375	49	527	1	ENST00000263253.7:c.2801C>T	p.Pro934Leu	p.P934L	ENST00000263253	NM_001429.3	934	cCg/cTg																																																																															
PRDM1	639	MSKCC	GRCh37	6	106555116	106555116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139718143		P-0029409-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			676	166	1108	3	ENST00000369096.4:c.2233G>A	p.Val745Met	p.V745M	ENST00000369096	NM_001198.3	745	Gtg/Atg																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100859	27100859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029409-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			502	181	968	1	ENST00000324856.7:c.4141G>A	p.Ala1381Thr	p.A1381T	ENST00000324856	NM_006015.4	1381	Gcc/Acc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115118855	115118856	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0029409-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			660	264	755	0	ENST00000257566.3:c.485_486del	p.Arg162LeufsTer2	p.R162Lfs*2	ENST00000257566	NM_016569.3	162	cGT/c																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212348	36212348	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029409-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			463	1066	1196	0	ENST00000222270.7:c.2099A>G	p.Asn700Ser	p.N700S	ENST00000222270	NM_014727.1	700	aAc/aGc																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048735	180048735	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029409-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			685	418	1218	0	ENST00000261937.6:c.1827C>G	p.Asp609Glu	p.D609E	ENST00000261937	NM_182925.4	609	gaC/gaG																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157488268	157488268	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs868392930		P-0029409-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			489	101	751	0	ENST00000346085.5:c.2974A>G	p.Thr992Ala	p.T992A	ENST00000346085	NM_020732.3	992	Acg/Gcg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035458-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			402	102	356	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0035458-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			632	237	785	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																															
YES1	7525	MSKCC	GRCh37	18	736912	736912	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035458-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			428	130	443	2	ENST00000314574.4:c.1187A>T	p.Asp396Val	p.D396V	ENST00000314574	NM_005433.3	396	gAt/gTt																																																																															
ROS1	6098	MSKCC	GRCh37	6	117678067	117678067	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs369009006		P-0035458-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			216	115	337	3	ENST00000368508.3:c.3866G>A	p.Trp1289Ter	p.W1289*	ENST00000368508	NM_002944.2	1289	tGg/tAg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971080	21971081	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035458-T02-IM6									Unknown	UNKNOWN				MSK-IMPACT			220	72	291	0	ENST00000304494.5:c.277dup	p.Thr93AsnfsTer27	p.T93Nfs*27	ENST00000304494	NM_000077.4	93	acg/aAcg																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849015	156849015	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771421920		P-0047487-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			469	62	778	0	ENST00000524377.1:c.1907C>T	p.Ala636Val	p.A636V	ENST00000524377	NM_002529.3	636	gCg/gTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047487-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			87	23	323	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633381	3633381	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs759305861		P-0047487-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			601	184	864	14	ENST00000294008.3:c.4870C>G	p.Pro1624Ala	p.P1624A	ENST00000294008	NM_032444.2	1624	Cct/Gct																																																																															
NF1	4763	MSKCC	GRCh37	17	29687665	29687665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047487-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			339	57	497	1	ENST00000358273.4:c.8321C>T	p.Ala2774Val	p.A2774V	ENST00000358273	NM_001042492.2	2774	gCc/gTc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11143994	11143994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047487-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			407	118	562	0	ENST00000358026.2:c.3575G>A	p.Arg1192His	p.R1192H	ENST00000358026	NM_001128849.1	1192	cGc/cAc																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793431	242793431	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376257658		P-0047487-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			364	76	638	0	ENST00000334409.5:c.646G>A	p.Val216Met	p.V216M	ENST00000334409	NM_005018.2	216	Gtg/Atg																																																																															
SRC	6714	MSKCC	GRCh37	20	36030955	36030955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047487-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			515	45	656	0	ENST00000358208.4:c.1234C>T	p.Arg412Trp	p.R412W	ENST00000358208		412	Cgg/Tgg																																																																															
EP300	2033	MSKCC	GRCh37	22	41574357	41574358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047487-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			460	53	590	0	ENST00000263253.7:c.6642_6643insA	p.Gln2215ThrfsTer87	p.Q2215Tfs*87	ENST00000263253	NM_001429.3	2214	-/A																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100193	157100193	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1274183370		P-0047487-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			75	29	80	0	ENST00000346085.5:c.1130G>T	p.Gly377Val	p.G377V	ENST00000346085	NM_020732.3	377	gGc/gTc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033203	69033203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs964579317		P-0047487-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			238	38	335	0	ENST00000288368.4:c.3643C>T	p.Arg1215Trp	p.R1215W	ENST00000288368	NM_024870.2	1215	Cgg/Tgg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0047487-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			441	137	644	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412508	63412508	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs202069335		P-0047487-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			470	39	579	0	ENST00000330258.3:c.659C>A	p.Thr220Asn	p.T220N	ENST00000330258	NM_152424.3	220	aCc/aAc																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0057279-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			188	30	414	0				ENST00000310581	NM_198253.2																																																																																	
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0057279-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			607	542	923	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245759	41245759	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55650082		P-0057279-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			373	330	814	0	ENST00000357654.3:c.1789G>A	p.Glu597Lys	p.E597K	ENST00000357654	NM_007294.3	597	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577557	7577557	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0057279-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			537	191	886	0	ENST00000269305.4:c.724T>C	p.Cys242Arg	p.C242R	ENST00000269305	NM_001126112.2	242	Tgc/Cgc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66242776	66242776	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0057279-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			404	56	354	1	ENST00000273854.3:c.1796G>T	p.Cys599Phe	p.C599F	ENST00000273854	NM_004439.5	599	tGc/tTc																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430992	181430992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0057279-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			770	121	1266	0	ENST00000325404.1:c.844G>A	p.Glu282Lys	p.E282K	ENST00000325404	NM_003106.3	282	Gag/Aag																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88680698	88680698	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057279-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			600	128	1037	1	ENST00000360948.2:c.559C>A	p.Leu187Ile	p.L187I	ENST00000360948	NM_001012338.2	187	Ctc/Atc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15353797	15353823	+	inframe_deletion	In_Frame_Del	DEL	GGCTGCTGGCCTGGGGGCGGATGGGGG	GGCTGCTGGCCTGGGGGCGGATGGGGG	-			P-0057279-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			350	192	718	0	ENST00000263377.2:c.3057_3083del	p.His1021_Pro1029del	p.H1021_P1029del	ENST00000263377	NM_058243.2	1019	ccCCCCCATCCGCCCCCAGGCCAGCAGCCa/cca																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62317169	62317169	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0057279-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			475	344	1343	0	ENST00000508582.2:c.1364A>T	p.His455Leu	p.H455L	ENST00000508582		455	cAc/cTc																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64129160	64129160	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs537223935		P-0057279-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			478	339	1322	1	ENST00000334205.4:c.698C>T	p.Thr233Met	p.T233M	ENST00000334205	NM_003942.2	233	aCg/aTg																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2089983	2089984	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0057279-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			408	374	1294	0	ENST00000219066.1:c.879_880dup	p.His294ArgfsTer48	p.H294Rfs*48	ENST00000219066	NM_002528.5	294	cac/cGCac																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828348	72828348	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0057279-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			376	331	863	0	ENST00000268489.5:c.8233C>G	p.Leu2745Val	p.L2745V	ENST00000268489	NM_006885.3	2745	Cta/Gta																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222391	2222391	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0057279-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			229	330	915	0	ENST00000398665.3:c.3223T>G	p.Cys1075Gly	p.C1075G	ENST00000398665	NM_032482.2	1075	Tgt/Ggt																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389344	8389344	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0057279-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			483	37	692	0	ENST00000356435.5:c.4274A>T	p.Tyr1425Phe	p.Y1425F	ENST00000356435		1425	tAt/tTt																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87339199	87339199	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0057279-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			438	84	659	0	ENST00000277120.3:c.781G>T	p.Gly261Trp	p.G261W	ENST00000277120		261	Ggg/Tgg																																																																															
ABL1	25	MSKCC	GRCh37	9	133730187	133730187	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0057279-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			160	233	615	0	ENST00000318560.5:c.254del		p.X85_splice	ENST00000318560	NM_005157.4	85																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			164	29	611	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519841		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			179	51	310	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913294		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			113	58	610	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																															
SPEN	23013	MSKCC	GRCh37	1	16235967	16235967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			182	55	682	1	ENST00000375759.3:c.1033C>T	p.Arg345Cys	p.R345C	ENST00000375759	NM_015001.2	345	Cgc/Tgc																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797162	45797162	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			180	78	590	0	ENST00000372115.3:c.1211A>G	p.Lys404Arg	p.K404R	ENST00000372115	NM_001048171.1	404	aAg/aGg																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458964	120458964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			110	26	678	0	ENST00000256646.2:c.6381G>T	p.Lys2127Asn	p.K2127N	ENST00000256646	NM_024408.3	2127	aaG/aaT																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25976508	25976508	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			153	23	880	0	ENST00000435504.4:c.1037G>A	p.Gly346Asp	p.G346D	ENST00000435504		346	gGt/gAt																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25991713	25991713	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs190136878		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			194	11	470	0	ENST00000435504.4:c.529A>C	p.Lys177Gln	p.K177Q	ENST00000435504		177	Aag/Cag																																																																															
ALK	238	MSKCC	GRCh37	2	29416710	29416710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			143	13	450	0	ENST00000389048.3:c.4243C>T	p.Pro1415Ser	p.P1415S	ENST00000389048	NM_004304.4	1415	Ccc/Tcc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026438	48026438	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs786202363		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			175	55	695	0	ENST00000234420.5:c.1316A>G	p.Asp439Gly	p.D439G	ENST00000234420	NM_000179.2	439	gAt/gGt																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027886	48027886	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779246		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			149	46	555	0	ENST00000234420.5:c.2764C>T	p.Arg922Ter	p.R922*	ENST00000234420	NM_000179.2	922	Cga/Tga																																																																															
CASP8	841	MSKCC	GRCh37	2	202131403	202131403	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			143	32	497	0	ENST00000358485.4:c.371T>G	p.Leu124Arg	p.L124R	ENST00000358485	NM_001080125.1	124	cTg/cGg																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251638	212251638	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1454494195		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			237	13	650	0	ENST00000342788.4:c.3421C>T	p.Pro1141Ser	p.P1141S	ENST00000342788	NM_005235.2	1141	Cca/Tca																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663220	227663220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			304	21	804	0	ENST00000305123.5:c.235A>G	p.Lys79Glu	p.K79E	ENST00000305123	NM_005544.2	79	Aag/Gag																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266888	41266888	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs963558956		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			197	19	620	0	ENST00000349496.5:c.559G>A	p.Ala187Thr	p.A187T	ENST00000349496	NM_001904.3	187	Gct/Act																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437692	52437692	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs201302700		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			159	52	496	0	ENST00000460680.1:c.1469A>G	p.Asn490Ser	p.N490S	ENST00000460680	NM_004656.3	490	aAt/aGt																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021817	71021817	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs797045586		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			167	37	601	0	ENST00000318789.4:c.1541G>A	p.Arg514His	p.R514H	ENST00000318789	NM_032682.5	514	cGt/cAt																																																																															
BCL6	604	MSKCC	GRCh37	3	187440346	187440346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			226	32	309	0	ENST00000232014.4:c.2021G>A	p.Arg674Gln	p.R674Q	ENST00000232014	NM_001130845.1	674	cGa/cAa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133858	55133858	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			177	18	598	0	ENST00000257290.5:c.1071T>G	p.Ile357Met	p.I357M	ENST00000257290	NM_006206.4	357	atT/atG																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332829	153332829	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			169	63	743	0	ENST00000281708.4:c.127C>T	p.Gln43Ter	p.Q43*	ENST00000281708	NM_033632.3	43	Cag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524993	187524993	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371987657		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			191	41	455	0	ENST00000441802.2:c.10687G>A	p.Val3563Ile	p.V3563I	ENST00000441802	NM_005245.3	3563	Gtc/Atc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187525602	187525602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			196	14	917	0	ENST00000441802.2:c.10477C>T	p.Pro3493Ser	p.P3493S	ENST00000441802	NM_005245.3	3493	Ccg/Tcg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155653	56155653	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200234617		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			239	13	337	0	ENST00000399503.3:c.745C>T	p.Arg249Cys	p.R249C	ENST00000399503	NM_005921.1	249	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112174868	112174868	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			128	40	533	0	ENST00000257430.4:c.3577C>T	p.Gln1193Ter	p.Q1193*	ENST00000257430	NM_000038.5	1193	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175141	112175141	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			74	18	248	0	ENST00000257430.4:c.3850G>T	p.Glu1284Ter	p.E1284*	ENST00000257430	NM_000038.5	1284	Gaa/Taa																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32165173	32165173	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752105876		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			222	96	458	1	ENST00000375023.3:c.4955G>A	p.Arg1652His	p.R1652H	ENST00000375023	NM_004557.3	1652	cGc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528640	157528640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			266	21	569	2	ENST00000346085.5:c.6365G>A	p.Arg2122His	p.R2122H	ENST00000346085	NM_020732.3	2122	cGc/cAc																																																																															
MYC	4609	MSKCC	GRCh37	8	128751055	128751055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			453	25	540	1	ENST00000377970.2:c.592G>A	p.Ala198Thr	p.A198T	ENST00000377970	NM_002467.4	198	Gcc/Acc																																																																															
MYC	4609	MSKCC	GRCh37	8	128753188	128753188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			436	43	320	0	ENST00000377970.2:c.1349G>A	p.Arg450Gln	p.R450Q	ENST00000377970	NM_002467.4	450	cGg/cAg																																																																															
EGFL7	51162	MSKCC	GRCh37	9	139564463	139564463	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			195	13	391	0	ENST00000308874.7:c.409+2T>C		p.X137_splice	ENST00000308874		137																																																																																
RET	5979	MSKCC	GRCh37	10	43604533	43604533	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs546866208		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			177	23	799	0	ENST00000355710.3:c.1118C>T	p.Ala373Val	p.A373V	ENST00000355710	NM_020975.4	373	gCg/gTg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572031	64572031	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			322	25	602	0	ENST00000337652.1:c.1623G>T	p.Gln541His	p.Q541H	ENST00000337652	NM_130803.2	541	caG/caT																																																																															
ATM	472	MSKCC	GRCh37	11	108170565	108170565	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			112	16	597	0	ENST00000278616.4:c.5130G>A	p.Trp1710Ter	p.W1710*	ENST00000278616	NM_000051.3	1710	tgG/tgA																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118377264	118377264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			180	56	818	0	ENST00000534358.1:c.10657G>T	p.Gly3553Trp	p.G3553W	ENST00000534358	NM_005933.3	3553	Ggg/Tgg																																																																															
KDM5A	5927	MSKCC	GRCh37	12	432289	432289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376128815		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			181	44	756	0	ENST00000399788.2:c.2234G>A	p.Arg745His	p.R745H	ENST00000399788	NM_001042603.1	745	cGt/cAt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46231437	46231437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			168	48	519	1	ENST00000334344.6:c.1277C>T	p.Thr426Met	p.T426M	ENST00000334344	NM_152641.2	426	aCg/aTg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46240657	46240657	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757456378		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			96	29	452	1	ENST00000334344.6:c.1517C>T	p.Ala506Val	p.A506V	ENST00000334344	NM_152641.2	506	gCg/gTg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426739	121426739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			241	16	829	0	ENST00000257555.6:c.430C>A	p.Leu144Met	p.L144M	ENST00000257555		144	Ctg/Atg																																																																															
POLE	5426	MSKCC	GRCh37	12	133219167	133219167	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766252708		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			157	16	645	0	ENST00000320574.5:c.4877G>A	p.Arg1626His	p.R1626H	ENST00000320574	NM_006231.2	1626	cGc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133225959	133225959	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs949243552		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			147	31	686	0	ENST00000320574.5:c.3938C>T	p.Thr1313Met	p.T1313M	ENST00000320574	NM_006231.2	1313	aCg/aTg																																																																															
CDK8	1024	MSKCC	GRCh37	13	26828876	26828876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			492	28	600	0	ENST00000381527.3:c.98G>A	p.Gly33Asp	p.G33D	ENST00000381527	NM_001260.1	33	gGt/gAt																																																																															
FLT1	2321	MSKCC	GRCh37	13	28880860	28880860	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746322044		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			156	70	637	1	ENST00000282397.4:c.3770G>A	p.Arg1257His	p.R1257H	ENST00000282397	NM_002019.4	1257	cGc/cAc																																																																															
FLT1	2321	MSKCC	GRCh37	13	28897063	28897063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			232	19	527	0	ENST00000282397.4:c.2817G>T	p.Glu939Asp	p.E939D	ENST00000282397	NM_002019.4	939	gaG/gaT																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913027	32913027	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80358685		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			160	121	512	0	ENST00000380152.3:c.4535G>A	p.Arg1512His	p.R1512H	ENST00000380152		1512	cGt/cAt																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435420	110435420	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1049519615		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			163	189	254	0	ENST00000375856.3:c.2981C>T	p.Pro994Leu	p.P994L	ENST00000375856	NM_003749.2	994	cCg/cTg																																																																															
DICER1	23405	MSKCC	GRCh37	14	95595942	95595942	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774514314		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			142	31	609	0	ENST00000343455.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000343455	NM_177438.2	201	Cgc/Tgc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134442	2134442	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45517332		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			137	36	847	0	ENST00000219476.3:c.4219G>A	p.Val1407Met	p.V1407M	ENST00000219476	NM_000548.3	1407	Gtg/Atg																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934842	9934842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			135	53	1094	0	ENST00000330684.3:c.1448G>A	p.Gly483Glu	p.G483E	ENST00000330684	NM_001134407.1	483	gGg/gAg																																																																															
PALB2	79728	MSKCC	GRCh37	16	23646867	23646867	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			152	34	959	0	ENST00000261584.4:c.1000T>C	p.Tyr334His	p.Y334H	ENST00000261584	NM_024675.3	334	Tac/Cac																																																																															
CDH1	999	MSKCC	GRCh37	16	68849514	68849514	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs36087757		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			163	76	825	0	ENST00000261769.5:c.1417G>A	p.Val473Ile	p.V473I	ENST00000261769	NM_004360.3	473	Gtc/Atc																																																																															
CDH1	999	MSKCC	GRCh37	16	68857367	68857367	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			203	18	631	0	ENST00000261769.5:c.2002A>G	p.Lys668Glu	p.K668E	ENST00000261769	NM_004360.3	668	Aag/Gag																																																																															
FLCN	201163	MSKCC	GRCh37	17	17129563	17129563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			159	11	884	0	ENST00000285071.4:c.323G>A	p.Ser108Asn	p.S108N	ENST00000285071	NM_144997.5	108	aGc/aAc																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59820436	59820436	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			187	12	818	0	ENST00000259008.2:c.2317G>T	p.Asp773Tyr	p.D773Y	ENST00000259008	NM_032043.2	773	Gat/Tat																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5221161	5221161	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs575201235		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			136	10	425	0	ENST00000357368.4:c.3305G>A	p.Arg1102His	p.R1102H	ENST00000357368	NM_002850.3	1102	cGc/cAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098455	11098455	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1361910224		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			120	65	486	1	ENST00000344626.4:c.973G>A	p.Val325Met	p.V325M	ENST00000344626	NM_003072.3	325	Gtg/Atg																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132438	11132438	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794284		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			136	52	817	0	ENST00000358026.2:c.2654G>A	p.Arg885His	p.R885H	ENST00000358026	NM_001128849.1	885	cGc/cAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135006	11135006	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			148	19	442	0	ENST00000344626.4:c.2974-1G>T		p.X992_splice	ENST00000344626	NM_003072.3	992																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15284907	15284907	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs551991530		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			183	18	640	0	ENST00000263388.2:c.4708C>T	p.Arg1570Cys	p.R1570C	ENST00000263388	NM_000435.2	1570	Cgt/Tgt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57478633	57478633	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1131691999		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			174	48	421	0	ENST00000371085.3:c.305C>T	p.Ala102Val	p.A102V	ENST00000371085	NM_000516.4	102	gCg/gTg																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24135758	24135758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			154	48	538	0	ENST00000263121.7:c.245C>T	p.Thr82Met	p.T82M	ENST00000263121	NM_003073.3	82	aCg/aTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933358	39933358	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779371249		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			182	23	485	0	ENST00000378444.4:c.1241C>T	p.Ala414Val	p.A414V	ENST00000378444	NM_001123385.1	414	gCg/gTg																																																																															
ARAF	369	MSKCC	GRCh37	X	47424289	47424289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			222	28	436	2	ENST00000377045.4:c.294G>A	p.Met98Ile	p.M98I	ENST00000377045	NM_001654.4	98	atG/atA																																																																															
AR	367	MSKCC	GRCh37	X	66765973	66765973	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			110	10	447	0	ENST00000374690.3:c.985G>T	p.Gly329Cys	p.G329C	ENST00000374690	NM_000044.3	329	Ggc/Tgc																																																																															
NRAS	4893	MSKCC	GRCh37	1	115252328	115252328	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			179	16	758	0	ENST00000369535.4:c.312del	p.Asp105ThrfsTer9	p.D105Tfs*9	ENST00000369535	NM_002524.4	104	aaA/aa																																																																															
KDM5A	5927	MSKCC	GRCh37	12	402216	402217	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			201	42	1585	0	ENST00000399788.2:c.4574dup	p.Glu1526GlyfsTer9	p.E1526Gfs*9	ENST00000399788	NM_001042603.1	1525	aag/aaAg																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			79	20	364	0	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0001237-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			259	20	733	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0055403-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			447	21	683	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372258	55372259	+	inframe_insertion	In_Frame_Ins	INS	-	-	CACCAG	rs564144826		P-0055403-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			248	79	615	0	ENST00000297316.4:c.972_977dup	p.Gln324_His325dup	p.Q324_H325dup	ENST00000297316	NM_022454.3	324	-/CACCAG																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5208051	5208051	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1477222866		P-0055403-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			288	284	973	1	ENST00000357368.4:c.5660C>T	p.Thr1887Met	p.T1887M	ENST00000357368	NM_002850.3	1887	aCg/aTg																																																																															
NBN	4683	MSKCC	GRCh37	8	90983475	90983475	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs61754796		P-0055403-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			210	187	499	0	ENST00000265433.3:c.628G>T	p.Val210Phe	p.V210F	ENST00000265433	NM_002485.4	210	Gtt/Ttt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216712	36216712	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780411851		P-0055403-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			322	294	810	2	ENST00000222270.7:c.3878G>A	p.Arg1293His	p.R1293H	ENST00000222270	NM_014727.1	1293	cGc/cAc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740620	145740620	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs386833844		P-0055403-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			409	343	1297	2	ENST00000428558.2:c.1397C>T	p.Pro466Leu	p.P466L	ENST00000428558	NM_004260.3	466	cCg/cTg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916942	178916944	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0055403-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			473	41	722	0	ENST00000263967.3:c.330_332del	p.Lys111del	p.K111del	ENST00000263967	NM_006218.2	110	gAAAag/gag																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514805	103514805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055403-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			224	207	678	1	ENST00000355739.4:c.1306G>A	p.Asp436Asn	p.D436N	ENST00000355739	NM_000123.3	436	Gat/Aat																																																																															
KDR	3791	MSKCC	GRCh37	4	55964961	55964961	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0055403-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			385	29	535	1	ENST00000263923.4:c.2276A>T	p.Glu759Val	p.E759V	ENST00000263923	NM_002253.2	759	gAa/gTa																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285876	38285876	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055403-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			352	326	1079	0	ENST00000425967.3:c.535C>G	p.Pro179Ala	p.P179A	ENST00000425967	NM_001174067.1	179	Cca/Gca																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41239870	41239870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0055493-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			407	32	720	0	ENST00000379561.5:c.480G>T	p.Trp160Cys	p.W160C	ENST00000379561	NM_002015.3	160	tgG/tgT																																																																															
BLM	641	MSKCC	GRCh37	15	91304399	91304399	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055493-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			421	27	582	0	ENST00000355112.3:c.1796G>C	p.Arg599Thr	p.R599T	ENST00000355112	NM_000057.2	599	aGa/aCa																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2213981	2213992	+	inframe_deletion	In_Frame_Del	DEL	CACCCCAGACGT	CACCCCAGACGT	-	rs764728133		P-0055493-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			550	237	1411	0	ENST00000326181.6:c.64_75del	p.Pro22_Thr25del	p.P22_T25del	ENST00000326181	NM_032271.2	20	ccCACCCCAGACGTc/ccc																																																																															
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0055493-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			800	147	1544	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																															
TP53	7157	MSKCC	GRCh37	17	7579478	7579478	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0055493-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			786	171	1522	0	ENST00000269305.4:c.209C>G	p.Ala70Gly	p.A70G	ENST00000269305	NM_001126112.2	70	gCt/gGt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610087	10610087	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0055493-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			635	79	1217	0	ENST00000171111.5:c.623del	p.Tyr208SerfsTer22	p.Y208Sfs*22	ENST00000171111	NM_203500.1	208	tAc/tc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469633	25469633	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754459010		P-0055493-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			832	52	1268	3	ENST00000264709.3:c.1135C>T	p.Arg379Cys	p.R379C	ENST00000264709	NM_175629.2	379	Cgc/Tgc																																																																															
REL	5966	MSKCC	GRCh37	2	61149480	61149480	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1252386510		P-0055493-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			332	41	547	0	ENST00000295025.8:c.1670C>T	p.Ser557Leu	p.S557L	ENST00000295025	NM_002908.2	557	tCa/tTa																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46275985	46275985	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0055493-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			563	37	865	0	ENST00000371998.3:c.3421C>T	p.Gln1141Ter	p.Q1141*	ENST00000371998		1141	Cag/Tag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938922	178938922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0055493-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			461	136	741	0	ENST00000263967.3:c.2164G>A	p.Glu722Lys	p.E722K	ENST00000263967	NM_006218.2	722	Gag/Aag																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0054674-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			559	137	634	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246290	46246290	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054674-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			543	51	785	0	ENST00000334344.6:c.4384C>T	p.Gln1462Ter	p.Q1462*	ENST00000334344	NM_152641.2	1462	Cag/Tag																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098799	178098799	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054674-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			793	138	1196	0	ENST00000397062.3:c.246A>C	p.Glu82Asp	p.E82D	ENST00000397062	NM_006164.4	82	gaA/gaC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577563	7577563	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0054674-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			638	168	1168	0	ENST00000269305.4:c.718A>C	p.Ser240Arg	p.S240R	ENST00000269305	NM_001126112.2	240	Agt/Cgt																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30133060	30133060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0054674-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			583	33	687	0	ENST00000331968.5:c.541G>A	p.Gly181Ser	p.G181S	ENST00000331968	NM_002742.2	181	Ggt/Agt																																																																															
BLM	641	MSKCC	GRCh37	15	91303877	91303877	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054674-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			664	73	993	0	ENST00000355112.3:c.1274G>C	p.Gly425Ala	p.G425A	ENST00000355112	NM_000057.2	425	gGc/gCc																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633185	3633185	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054674-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			704	792	1718	1	ENST00000294008.3:c.5066G>T	p.Gly1689Val	p.G1689V	ENST00000294008	NM_032444.2	1689	gGc/gTc																																																																															
FANCA	2175	MSKCC	GRCh37	16	89882388	89882388	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054674-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			758	156	1092	0	ENST00000389301.3:c.86G>T	p.Arg29Met	p.R29M	ENST00000389301	NM_000135.2	29	aGg/aTg																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33793137	33793137	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0054674-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			453	49	636	0	ENST00000498907.2:c.184A>G	p.Ile62Val	p.I62V	ENST00000498907	NM_004364.3	62	Atc/Gtc																																																																															
ALK	238	MSKCC	GRCh37	2	29451921	29451921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054674-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			894	85	1245	0	ENST00000389048.3:c.2644G>T	p.Gly882Cys	p.G882C	ENST00000389048	NM_004304.4	882	Ggc/Tgc																																																																															
SETD2	29072	MSKCC	GRCh37	3	47079260	47079260	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0054674-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			596	87	804	2	ENST00000409792.3:c.7246C>T	p.Gln2416Ter	p.Q2416*	ENST00000409792	NM_014159.6	2416	Cag/Tag																																																																															
SETD2	29072	MSKCC	GRCh37	3	47161747	47161747	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0054674-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			502	67	615	0	ENST00000409792.3:c.4379G>A	p.Trp1460Ter	p.W1460*	ENST00000409792	NM_014159.6	1460	tGg/tAg																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738765	145738765	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0054674-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			1051	684	1981	0	ENST00000428558.2:c.2299G>A	p.Val767Met	p.V767M	ENST00000428558	NM_004260.3	767	Gtg/Atg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0054692-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			538	314	1707	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67592163	67592164	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTAG			P-0054692-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			232	14	377	0	ENST00000274335.5:c.1984_1985+3dup		p.S660fs	ENST00000274335		660	tct/tcTGTAGt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11298552	11298552	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs138066958		P-0054692-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			309	402	1192	0	ENST00000361445.4:c.1909A>G	p.Ile637Val	p.I637V	ENST00000361445	NM_004958.3	637	Atc/Gtc																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436584	110436584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0054692-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			253	466	1806	0	ENST00000375856.3:c.1817C>T	p.Ser606Leu	p.S606L	ENST00000375856	NM_003749.2	606	tCg/tTg																																																																															
RET	5979	MSKCC	GRCh37	10	43615142	43615142	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054692-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			549	307	1696	0	ENST00000355710.3:c.2556C>G	p.Ile852Met	p.I852M	ENST00000355710	NM_020975.4	852	atC/atG																																																																															
NKX3-1	4824	MSKCC	GRCh37	8	23540222	23540222	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0054692-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			201	254	694	0	ENST00000380871.4:c.181G>C	p.Glu61Gln	p.E61Q	ENST00000380871	NM_006167.3	61	Gag/Cag																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554110	63554110	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0054692-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			317	372	1317	0	ENST00000307078.5:c.629T>C	p.Met210Thr	p.M210T	ENST00000307078	NM_004655.3	210	aTg/aCg																																																																															
AXL	558	MSKCC	GRCh37	19	41744443	41744443	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0054692-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			525	397	1575	0	ENST00000301178.4:c.1063G>C	p.Glu355Gln	p.E355Q	ENST00000301178	NM_021913.4	355	Gag/Cag																																																																															
TET1	80312	MSKCC	GRCh37	10	70406171	70406171	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0054692-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			283	18	1026	0	ENST00000373644.4:c.3685A>T	p.Ile1229Phe	p.I1229F	ENST00000373644	NM_030625.2	1229	Att/Ttt																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272003	15272003	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0054692-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			487	430	1708	1	ENST00000263388.2:c.6436G>T	p.Ala2146Ser	p.A2146S	ENST00000263388	NM_000435.2	2146	Gcg/Tcg																																																																															
MST1R	4486	MSKCC	GRCh37	3	49939920	49939921	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0054692-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			806	101	1727	1	ENST00000296474.3:c.1122_1123delinsTT	p.Asp375Tyr	p.D375Y	ENST00000296474	NM_002447.2	374	ctGGac/ctTTac																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711912	89711912	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045594-T08-IM6									Unknown	UNKNOWN				MSK-IMPACT			352	145	768	0	ENST00000371953.3:c.530A>G	p.Tyr177Cys	p.Y177C	ENST00000371953	NM_000314.4	177	tAt/tGt																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373305	118373306	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0045594-T08-IM6									Unknown	UNKNOWN				MSK-IMPACT			343	269	742	1	ENST00000534358.1:c.6698_6699delinsTT	p.Thr2233Ile	p.T2233I	ENST00000534358	NM_005933.3	2233	aCC/aTT																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0045594-T08-IM6									Unknown	UNKNOWN				MSK-IMPACT			391	117	614	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447311	49447311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045594-T08-IM6									Unknown	UNKNOWN				MSK-IMPACT			746	219	1144	1	ENST00000301067.7:c.787C>T	p.Arg263Cys	p.R263C	ENST00000301067	NM_003482.3	263	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045594-T08-IM6									Unknown	UNKNOWN				MSK-IMPACT			323	143	735	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266046	41266046	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045594-T08-IM6									Unknown	UNKNOWN				MSK-IMPACT			316	90	387	0	ENST00000349496.5:c.43G>T	p.Glu15Ter	p.E15*	ENST00000349496	NM_001904.3	15	Gaa/Taa																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0045594-T08-IM6									Unknown	UNKNOWN				MSK-IMPACT			408	113	805	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938890	178938890	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045594-T08-IM6									Unknown	UNKNOWN				MSK-IMPACT			220	66	305	0	ENST00000263967.3:c.2132A>G	p.Lys711Arg	p.K711R	ENST00000263967	NM_006218.2	711	aAg/aGg																																																																															
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0045594-T08-IM6									Unknown	UNKNOWN				MSK-IMPACT			363	115	558	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0045594-T08-IM6									Unknown	UNKNOWN				MSK-IMPACT			328	92	496	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411411	63411411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045594-T08-IM6									Unknown	UNKNOWN				MSK-IMPACT			502	223	952	0	ENST00000330258.3:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000330258	NM_152424.3	586	Cga/Tga																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0053709-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			185	747	783	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs397516435		P-0053709-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			161	509	1227	0	ENST00000269305.4:c.586C>G	p.Arg196Gly	p.R196G	ENST00000269305	NM_001126112.2	196	Cga/Gga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778425	3778436	+	inframe_deletion	In_Frame_Del	DEL	TGTTGCTGCTGC	TGTTGCTGCTGC	-			P-0053709-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			1319	117	1682	1	ENST00000262367.5:c.6612_6623delGCAGCAGCAACA	p.Gln2213_Gln2216del	p.Q2213_Q2216del	ENST00000262367	NM_004380.2	2204	caGCAGCAGCAACAa/caa																																																																															
TSC2	7249	MSKCC	GRCh37	16	2126162	2126162	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0053709-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			798	301	1172	1	ENST00000219476.3:c.2733C>A	p.Phe911Leu	p.F911L	ENST00000219476	NM_000548.3	911	ttC/ttA																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480453	89480453	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0053709-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			254	181	545	0	ENST00000336596.2:c.2290G>C	p.Asp764His	p.D764H	ENST00000336596	NM_005233.5	764	Gat/Cat																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528762	157528762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0053709-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			390	121	881	0	ENST00000346085.5:c.6487C>G	p.Leu2163Val	p.L2163V	ENST00000346085	NM_020732.3	2163	Cta/Gta																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508727	106508727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0053709-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			716	276	994	0	ENST00000359195.3:c.721C>T	p.Pro241Ser	p.P241S	ENST00000359195	NM_002649.2	241	Ccc/Tcc																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0053146-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			539	98	903	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																															
TP63	8626	MSKCC	GRCh37	3	189608664	189608664	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1464459460		P-0053146-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			425	32	623	0	ENST00000264731.3:c.1739C>T	p.Ser580Phe	p.S580F	ENST00000264731	NM_003722.4	580	tCc/tTc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0052816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			335	44	594	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0052816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			388	80	1019	0	ENST00000269305.4:c.700T>A	p.Tyr234Asn	p.Y234N	ENST00000269305	NM_001126112.2	234	Tac/Aac																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788617	3788617	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			411	58	700	0	ENST00000262367.5:c.4337G>T	p.Arg1446Leu	p.R1446L	ENST00000262367	NM_004380.2	1446	cGc/cTc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49442916	49442916	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0052816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			421	61	980	1	ENST00000301067.7:c.3992C>A	p.Ser1331Ter	p.S1331*	ENST00000301067	NM_003482.3	1331	tCa/tAa																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244181	41244181	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0052816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			527	38	796	0	ENST00000357654.3:c.3367G>C	p.Asp1123His	p.D1123H	ENST00000357654	NM_007294.3	1123	Gat/Cat																																																																															
YES1	7525	MSKCC	GRCh37	18	756589	756589	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0052816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			286	227	751	0	ENST00000314574.4:c.239T>C	p.Val80Ala	p.V80A	ENST00000314574	NM_005433.3	80	gTg/gCg																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026838	48026838	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0052816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			326	234	698	1	ENST00000234420.5:c.1716G>T	p.Gln572His	p.Q572H	ENST00000234420	NM_000179.2	572	caG/caT																																																																															
BARD1	580	MSKCC	GRCh37	2	215657140	215657140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0052816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			272	310	483	0	ENST00000260947.4:c.245G>T	p.Gly82Val	p.G82V	ENST00000260947	NM_000465.2	82	gGa/gTa																																																																															
APC	324	MSKCC	GRCh37	5	112174572	112174572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0052816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			278	282	596	0	ENST00000257430.4:c.3281G>A	p.Gly1094Glu	p.G1094E	ENST00000257430	NM_000038.5	1094	gGa/gAa																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152055729	152055729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0052816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			606	58	712	0	ENST00000262189.6:c.193G>A	p.Asp65Asn	p.D65N	ENST00000262189	NM_170606.2	65	Gat/Aat																																																																															
STAG2	10735	MSKCC	GRCh37	X	123190014	123190014	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0052816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			413	58	638	0	ENST00000218089.9:c.1233A>C	p.Glu411Asp	p.E411D	ENST00000218089	NM_001042749.1	411	gaA/gaC																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0051824-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			530	37	726	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160660	56160660	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0051824-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			285	267	602	0	ENST00000399503.3:c.934A>T	p.Met312Leu	p.M312L	ENST00000399503	NM_005921.1	312	Atg/Ttg																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396622	30396623	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCCGGA			P-0051824-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			164	83	234	0	ENST00000331968.5:c.91_96dupTCCGGG	p.Ser31_Gly32dup	p.S31_G32dup	ENST00000331968	NM_002742.2	31	-/TCCGGG																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553135	106553135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051824-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			559	301	877	0	ENST00000369096.4:c.1100C>T	p.Ser367Phe	p.S367F	ENST00000369096	NM_001198.3	367	tCt/tTt																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81888159	81888159	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0051824-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			408	369	846	1	ENST00000359376.3:c.304A>G	p.Thr102Ala	p.T102A	ENST00000359376	NM_002661.3	102	Act/Gct																																																																															
BRD4	23476	MSKCC	GRCh37	19	15365050	15365050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051824-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			594	368	991	2	ENST00000263377.2:c.2071G>A	p.Gly691Ser	p.G691S	ENST00000263377	NM_058243.2	691	Ggc/Agc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69058490	69058490	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051824-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			600	41	688	0	ENST00000288368.4:c.4134A>C	p.Lys1378Asn	p.K1378N	ENST00000288368	NM_024870.2	1378	aaA/aaC																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948712	71948712	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051824-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			573	435	1122	0	ENST00000298229.2:c.3424C>G	p.Arg1142Gly	p.R1142G	ENST00000298229	NM_001567.3	1142	Cgc/Ggc																																																																															
PGR	5241	MSKCC	GRCh37	11	100996876	100996876	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051824-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			701	85	835	0	ENST00000325455.5:c.1651G>C	p.Ala551Pro	p.A551P	ENST00000325455	NM_001202474.3	551	Gcc/Ccc																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245009	46245009	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0051824-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			650	164	864	0	ENST00000334344.6:c.3103C>T	p.Gln1035Ter	p.Q1035*	ENST00000334344	NM_152641.2	1035	Caa/Taa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89877380	89877380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051824-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			433	412	875	0	ENST00000389301.3:c.383C>T	p.Pro128Leu	p.P128L	ENST00000389301	NM_000135.2	128	cCa/cTa																																																																															
BCL2	596	MSKCC	GRCh37	18	60985653	60985653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051824-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			163	26	137	0	ENST00000333681.4:c.247G>T	p.Gly83Trp	p.G83W	ENST00000333681		83	Ggg/Tgg																																																																															
BRD4	23476	MSKCC	GRCh37	19	15366342	15366342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051824-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			645	207	801	0	ENST00000263377.2:c.1813G>A	p.Asp605Asn	p.D605N	ENST00000263377	NM_058243.2	605	Gac/Aac																																																																															
BARD1	580	MSKCC	GRCh37	2	215645300	215645300	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0051824-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			346	184	708	0	ENST00000260947.4:c.1298A>G	p.His433Arg	p.H433R	ENST00000260947	NM_000465.2	433	cAt/cGt																																																																															
SRC	6714	MSKCC	GRCh37	20	36031631	36031631	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0051824-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			958	244	1233	0	ENST00000358208.4:c.1460C>G	p.Pro487Arg	p.P487R	ENST00000358208		487	cCg/cGg																																																																															
NF2	4771	MSKCC	GRCh37	22	30035145	30035145	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0051824-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			544	149	705	0	ENST00000338641.4:c.307G>T	p.Glu103Ter	p.E103*	ENST00000338641	NM_000268.3	103	Gag/Tag																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542500	187542500	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051824-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			371	328	803	0	ENST00000441802.2:c.5240C>G	p.Thr1747Ser	p.T1747S	ENST00000441802	NM_005245.3	1747	aCt/aGt																																																																															
MSH3	4437	MSKCC	GRCh37	5	80160696	80160696	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0051824-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			759	73	975	0	ENST00000265081.6:c.3065C>G	p.Ser1022Ter	p.S1022*	ENST00000265081	NM_002439.4	1022	tCa/tGa																																																																															
SESN1	27244	MSKCC	GRCh37	6	109308778	109308778	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0051824-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			436	24	482	0	ENST00000436639.2:c.1625C>A	p.Ala542Asp	p.A542D	ENST00000436639	NM_014454.2	542	gCt/gAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151879084	151879084	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051824-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			318	361	832	0	ENST00000262189.6:c.5861C>G	p.Ser1954Cys	p.S1954C	ENST00000262189	NM_170606.2	1954	tCt/tGt																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222414	53222414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051824-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			1	591	973	0	ENST00000375401.3:c.4418C>T	p.Ala1473Val	p.A1473V	ENST00000375401	NM_004187.3	1473	gCc/gTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0051505-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			601	163	857	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857779	9857779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0051505-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			751	128	1013	0	ENST00000330684.3:c.3622C>T	p.Arg1208Trp	p.R1208W	ENST00000330684	NM_001134407.1	1208	Cgg/Tgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0051230-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			579	101	707	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913283		P-0051230-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			397	30	514	0	ENST00000263967.3:c.3129G>T	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atT																																																																															
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0051230-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			800	40	989	0	ENST00000269305.4:c.770T>G	p.Leu257Arg	p.L257R	ENST00000269305	NM_001126112.2	257	cTg/cGg																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913385		P-0051230-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			663	40	680	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249092	55249092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0051230-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			776	278	963	0	ENST00000275493.2:c.2390G>C	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	tGc/tCc																																																																															
PRDM1	639	MSKCC	GRCh37	6	106552814	106552814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0051230-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			404	398	924	1	ENST00000369096.4:c.779C>T	p.Pro260Leu	p.P260L	ENST00000369096	NM_001198.3	260	cCc/cTc																																																																															
MALT1	10892	MSKCC	GRCh37	18	56363696	56363696	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0051230-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			236	246	699	0	ENST00000348428.3:c.475C>A	p.Gln159Lys	p.Q159K	ENST00000348428	NM_006785.3	159	Cag/Aag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139405252	139405252	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0051230-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			446	498	1026	0	ENST00000277541.6:c.2593A>T	p.Thr865Ser	p.T865S	ENST00000277541	NM_017617.3	865	Acc/Tcc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0050909-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			473	241	723	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426745	121426745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050909-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			540	112	1054	1	ENST00000257555.6:c.436C>A	p.Gln146Lys	p.Q146K	ENST00000257555		146	Caa/Aaa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28919645	28919645	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050909-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			551	58	750	0	ENST00000282397.4:c.2292C>A	p.Cys764Ter	p.C764*	ENST00000282397	NM_002019.4	764	tgC/tgA																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610114	81610114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050909-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			304	73	654	0	ENST00000298171.2:c.1712C>A	p.Pro571His	p.P571H	ENST00000298171	NM_000369.2	571	cCc/cAc																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675100	40675100	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050909-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			692	57	1180	0	ENST00000249776.8:c.64T>A	p.Cys22Ser	p.C22S	ENST00000249776	NM_033286.3	22	Tgc/Agc																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032377	10032377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050909-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			452	36	598	0	ENST00000330684.3:c.446C>A	p.Ala149Glu	p.A149E	ENST00000330684	NM_001134407.1	149	gCg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0050909-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			408	164	941	1	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
NF1	4763	MSKCC	GRCh37	17	29552196	29552196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050909-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			533	38	750	0	ENST00000358273.4:c.1929G>A	p.Met643Ile	p.M643I	ENST00000358273	NM_001042492.2	643	atG/atA																																																																															
EZH1	2145	MSKCC	GRCh37	17	40857188	40857209	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCAGCAGCAGGTGCTGGGGAA	GCCAGCAGCAGGTGCTGGGGAA	-			P-0050909-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			307	67	443	0	ENST00000428826.2:c.1840-8_1853del		p.X614_splice	ENST00000428826		614																																																																																
BRCA1	672	MSKCC	GRCh37	17	41223030	41223030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050909-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			716	61	1118	0	ENST00000357654.3:c.4901G>A	p.Arg1634Lys	p.R1634K	ENST00000357654	NM_007294.3	1634	aGg/aAg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2207631	2207631	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050909-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			601	56	1156	1	ENST00000398665.3:c.915G>A	p.Trp305Ter	p.W305*	ENST00000398665	NM_032482.2	305	tgG/tgA																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212426798	212426798	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050909-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			512	41	662	1	ENST00000342788.4:c.2317G>T	p.Ala773Ser	p.A773S	ENST00000342788	NM_005235.2	773	Gca/Tca																																																																															
MYD88	4615	MSKCC	GRCh37	3	38180181	38180181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050909-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			325	41	747	0	ENST00000396334.3:c.29G>A	p.Gly10Glu	p.G10E	ENST00000396334	NM_002468.4	10	gGa/gAa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467964	66467964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050909-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			401	47	548	2	ENST00000273854.3:c.305G>T	p.Cys102Phe	p.C102F	ENST00000273854	NM_004439.5	102	tGc/tTc																																																																															
EZH2	2146	MSKCC	GRCh37	7	148513816	148513816	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050909-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			582	79	789	0	ENST00000320356.2:c.1465G>T	p.Asp489Tyr	p.D489Y	ENST00000320356	NM_004456.4	489	Gat/Tat																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70970923	70970924	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0050909-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			583	48	1003	3	ENST00000276594.2:c.1337_1338delinsCT	p.Arg446Pro	p.R446P	ENST00000276594	NM_024504.3	446	cGG/cCT																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8341765	8341765	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050909-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			566	63	1050	0	ENST00000356435.5:c.4875G>C	p.Leu1625Phe	p.L1625F	ENST00000356435		1625	ttG/ttC																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518082	8518082	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050909-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			388	40	654	0	ENST00000356435.5:c.1309C>G	p.Gln437Glu	p.Q437E	ENST00000356435		437	Cag/Gag																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050699-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			448	301	677	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7572932	7572933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050699-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			324	214	832	0	ENST00000269305.4:c.1176dupA	p.Asp393ArgfsTer78	p.D393Rfs*78	ENST00000269305	NM_001126112.2	392	-/A																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993848	72993848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050699-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			331	272	927	0	ENST00000268489.5:c.197C>T	p.Ala66Val	p.A66V	ENST00000268489	NM_006885.3	66	gCg/gTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604650	48604650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050699-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			217	132	532	0	ENST00000342988.3:c.1472G>T	p.Gly491Val	p.G491V	ENST00000342988	NM_005359.5	491	gGt/gTt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822013	72822033	+	inframe_deletion	In_Frame_Del	DEL	GCTGCTGCTGCTGTAGTTGCC	GCTGCTGCTGCTGTAGTTGCC	-			P-0050699-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			332	184	769	0	ENST00000268489.5:c.10142_10162del	p.Arg3381_Gln3387del	p.R3381_Q3387del	ENST00000268489	NM_006885.3	3381	cGGCAACTACAGCAGCAGCAGCag/cag																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982361	201982361	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050699-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			963	173	1138	0	ENST00000359651.3:c.740G>C	p.Arg247Pro	p.R247P	ENST00000359651		247	cGa/cCa																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88672023	88672023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050699-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			412	29	585	0	ENST00000372037.3:c.557G>A	p.Arg186Lys	p.R186K	ENST00000372037	NM_004329.2	186	aGa/aAa																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78897331	78897331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050699-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			238	510	1318	0	ENST00000306801.3:c.2666C>T	p.Thr889Ile	p.T889I	ENST00000306801	NM_020761.2	889	aCc/aTc																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355248	15355248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050699-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			367	138	899	1	ENST00000263377.2:c.2375C>T	p.Ala792Val	p.A792V	ENST00000263377	NM_058243.2	792	gCg/gTg																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945639	54945639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050699-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			198	135	326	0	ENST00000312783.6:c.931G>A	p.Asp311Asn	p.D311N	ENST00000312783	NM_198436.1	311	Gat/Aat																																																																															
ETV1	2115	MSKCC	GRCh37	7	13978836	13978836	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050699-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			511	84	738	0	ENST00000405192.2:c.271G>C	p.Glu91Gln	p.E91Q	ENST00000405192	NM_001163147.1	91	Gaa/Caa																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978707	70978707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050699-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			364	241	785	0	ENST00000276594.2:c.946G>A	p.Asp316Asn	p.D316N	ENST00000276594	NM_024504.3	316	Gat/Aat																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771987	135771988	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCTGCT			P-0050699-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			394	160	847	0	ENST00000298552.3:c.3124_3129dup	p.Ser1042_Ser1043dup	p.S1042_S1043dup	ENST00000298552	NM_001162426.1	1042	-/AGCAGC																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0050385-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			534	102	957	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
RBM10	8241	MSKCC	GRCh37	X	47045009	47045009	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050385-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			576	147	1044	2	ENST00000329236.7:c.2101C>T	p.Gln701Ter	p.Q701*	ENST00000329236	NM_001204466.1	701	Cag/Tag																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291064	10291064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050385-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			509	44	803	2	ENST00000340748.4:c.407G>A	p.Arg136His	p.R136H	ENST00000340748		136	cGc/cAc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0048754-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			539	11	591	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750600586		P-0048754-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			1154	67	1265	2	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517552	176517552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048754-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			557	497	1274	2	ENST00000292408.4:c.253C>T	p.Arg85Cys	p.R85C	ENST00000292408	NM_213647.1	85	Cgc/Tgc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859007	57859007	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048754-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			480	395	888	0	ENST00000228682.2:c.503C>G	p.Pro168Arg	p.P168R	ENST00000228682	NM_005269.2	168	cCt/cGt																																																																															
PRKCI	5584	MSKCC	GRCh37	3	170002257	170002257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048754-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			113	95	207	0	ENST00000295797.4:c.1076C>G	p.Ser359Cys	p.S359C	ENST00000295797	NM_002740.5	359	tCt/tGt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538888	187538888	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048754-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			190	134	388	0	ENST00000441802.2:c.8852A>G	p.Asn2951Ser	p.N2951S	ENST00000441802	NM_005245.3	2951	aAc/aGc																																																																															
NBN	4683	MSKCC	GRCh37	8	90976721	90976721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048754-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			278	272	493	0	ENST00000265433.3:c.911C>T	p.Pro304Leu	p.P304L	ENST00000265433	NM_002485.4	304	cCt/cTt																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640394	3640394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048754-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			562	509	1169	0	ENST00000294008.3:c.3245A>G	p.Gln1082Arg	p.Q1082R	ENST00000294008	NM_032444.2	1082	cAg/cGg																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127379	55127379	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048754-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			371	271	790	0	ENST00000257290.5:c.167G>C	p.Ser56Thr	p.S56T	ENST00000257290	NM_006206.4	56	aGc/aCc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412885	63412885	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048754-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			401	372	804	0	ENST00000330258.3:c.282G>C	p.Lys94Asn	p.K94N	ENST00000330258	NM_152424.3	94	aaG/aaC																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226833	2226833	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047738-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			126	151	693	0	ENST00000398665.3:c.4313T>G	p.Leu1438Arg	p.L1438R	ENST00000398665	NM_032482.2	1438	cTc/cGc																																																																															
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0047738-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			575	391	980	0	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
EGFR	1956	MSKCC	GRCh37	7	55273278	55273278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047738-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			396	143	740	1	ENST00000275493.2:c.3601G>A	p.Ala1201Thr	p.A1201T	ENST00000275493	NM_005228.3	1201	Gcg/Acg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32191659	32191673	+	inframe_deletion	In_Frame_Del	DEL	AGCAGCAGCAGCAGC	AGCAGCAGCAGCAGC	-			P-0047738-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			433	278	1172	1	ENST00000375023.3:c.33_47del	p.Leu12_Leu16del	p.L12_L16del	ENST00000375023	NM_004557.3	11	ctGCTGCTGCTGCTGCTa/cta																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259712	16259712	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047738-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			201	253	649	0	ENST00000375759.3:c.6977T>C	p.Val2326Ala	p.V2326A	ENST00000375759	NM_015001.2	2326	gTt/gCt																																																																															
BRCA1	672	MSKCC	GRCh37	17	41258494	41258494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047738-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			460	49	593	0	ENST00000357654.3:c.191G>A	p.Cys64Tyr	p.C64Y	ENST00000357654	NM_007294.3	64	tGt/tAt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860595	151860595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047738-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			466	100	768	0	ENST00000262189.6:c.10067C>T	p.Ala3356Val	p.A3356V	ENST00000262189	NM_170606.2	3356	gCc/gTc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041420	47041421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047738-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			244	120	834	0	ENST00000329236.7:c.1531dup	p.Tyr511LeufsTer3	p.Y511Lfs*3	ENST00000329236	NM_001204466.1	510	-/T																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748483	162748483	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047700-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			421	26	498	0	ENST00000367921.3:c.2397G>C	p.Glu799Asp	p.E799D	ENST00000367921	NM_006182.2	799	gaG/gaC																																																																															
RAD52	5893	MSKCC	GRCh37	12	1040400	1040400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047700-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			753	40	865	0	ENST00000358495.3:c.172G>A	p.Gly58Ser	p.G58S	ENST00000358495	NM_134424.2	58	Ggc/Agc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432003	49432003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047700-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			845	65	1208	1	ENST00000301067.7:c.9136G>A	p.Glu3046Lys	p.E3046K	ENST00000301067	NM_003482.3	3046	Gag/Aag																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061183	38061183	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047700-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			541	315	742	0	ENST00000250448.2:c.806A>T	p.Glu269Val	p.E269V	ENST00000250448	NM_004496.3	269	gAg/gTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3823847	3823847	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047700-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			874	88	1076	0	ENST00000262367.5:c.2368C>G	p.Gln790Glu	p.Q790E	ENST00000262367	NM_004380.2	790	Cag/Gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0047700-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			627	176	944	1	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58677966	58677966	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047700-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			789	52	544	0	ENST00000305921.3:c.191C>A	p.Ser64Ter	p.S64*	ENST00000305921	NM_003620.3	64	tCg/tAg																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214586	5214586	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047700-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			833	63	1240	0	ENST00000357368.4:c.4480G>C	p.Glu1494Gln	p.E1494Q	ENST00000357368	NM_002850.3	1494	Gag/Cag																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144071	11144071	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047700-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			821	87	1277	0	ENST00000344626.4:c.3652G>C	p.Ala1218Pro	p.A1218P	ENST00000344626	NM_003072.3	1218	Gcc/Ccc																																																																															
ALK	238	MSKCC	GRCh37	2	29419657	29419657	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047700-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			450	24	600	0	ENST00000389048.3:c.4143G>C	p.Glu1381Asp	p.E1381D	ENST00000389048	NM_004304.4	1381	gaG/gaC																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023702	31023702	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047700-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			826	54	985	0	ENST00000375687.4:c.3187C>T	p.Gln1063Ter	p.Q1063*	ENST00000375687	NM_015338.5	1063	Cag/Tag																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264755	46264755	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0047700-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			460	30	578	0	ENST00000371998.3:c.1625C>G	p.Ser542Ter	p.S542*	ENST00000371998		542	tCa/tGa																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119721084	119721084	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047700-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			536	36	498	0	ENST00000316626.5:c.91G>A	p.Asp31Asn	p.D31N	ENST00000316626		31	Gac/Aac																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1980562	1980562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047700-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			392	413	1187	1	ENST00000382891.5:c.4024C>T	p.Pro1342Ser	p.P1342S	ENST00000382891	NM_133335.3	1342	Ccc/Tcc																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026636	6026636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047700-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			976	84	1426	3	ENST00000265849.7:c.1760G>A	p.Ser587Asn	p.S587N	ENST00000265849	NM_000535.5	587	aGt/aAt																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026707	6026708	+	missense_variant	Missense_Mutation	DNP	TC	TC	CT			P-0047700-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			709	123	1178	2	ENST00000265849.7:c.1688_1689delGAinsAG	p.Arg563Gln	p.R563Q	ENST00000265849	NM_000535.5	563	cGA/cAG																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0047700-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			762	1693	940	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209504	98209504	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766315655		P-0047700-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			860	59	1237	0	ENST00000331920.6:c.4034G>A	p.Arg1345His	p.R1345H	ENST00000331920	NM_000264.3	1345	cGt/cAt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98231106	98231106	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047700-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			425	388	893	0	ENST00000331920.6:c.2177C>G	p.Pro726Arg	p.P726R	ENST00000331920	NM_000264.3	726	cCc/cGc																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041162	47041162	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047700-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			943	60	901	0	ENST00000329236.7:c.1356G>T	p.Met452Ile	p.M452I	ENST00000329236	NM_001204466.1	452	atG/atT																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0047705-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			540	72	971	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99192851	99192851	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047705-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			240	233	838	0	ENST00000268035.6:c.41G>T	p.Trp14Leu	p.W14L	ENST00000268035	NM_000875.3	14	tGg/tTg																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770007	56770007	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0047705-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			195	161	716	0	ENST00000337432.4:c.3G>A	p.Met1?	p.M1?	ENST00000337432	NM_058216.2	1	atG/atA																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936610	49936610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047705-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			263	268	1156	1	ENST00000296474.3:c.1317C>A	p.Phe439Leu	p.F439L	ENST00000296474	NM_002447.2	439	ttC/ttA																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185183551	185183551	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047705-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			141	110	450	0	ENST00000265026.3:c.1405C>G	p.Arg469Gly	p.R469G	ENST00000265026	NM_004721.4	469	Cgt/Ggt																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128434760	128434760	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047705-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			256	226	858	0	ENST00000265960.3:c.94A>G	p.Ile32Val	p.I32V	ENST00000265960	NM_001006617.1	32	Att/Gtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			633	383	1563	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																															
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520017		P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			612	227	1652	2	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																															
CD79A	973	MSKCC	GRCh37	19	42384779	42384779	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			438	49	604	0	ENST00000221972.3:c.541G>T	p.Glu181Ter	p.E181*	ENST00000221972	NM_021601.3	181	Gaa/Taa																																																																															
ACVR1	90	MSKCC	GRCh37	2	158595013	158595013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			461	69	664	1	ENST00000263640.3:c.1334G>T	p.Arg445Met	p.R445M	ENST00000263640	NM_001105.4	445	aGg/aTg																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9770654	9770654	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			458	140	786	0	ENST00000377346.4:c.141G>T	p.Gln47His	p.Q47H	ENST00000377346	NM_005026.3	47	caG/caT																																																																															
SDHB	6390	MSKCC	GRCh37	1	17359580	17359580	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			492	61	685	0	ENST00000375499.3:c.261G>C	p.Leu87Phe	p.L87F	ENST00000375499	NM_003000.2	87	ttG/ttC																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156830763	156830763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			192	31	419	1	ENST00000524377.1:c.37C>T	p.His13Tyr	p.H13Y	ENST00000524377	NM_002529.3	13	Cac/Tac																																																																															
WT1	7490	MSKCC	GRCh37	11	32414299	32414299	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			381	59	565	0	ENST00000332351.3:c.1252G>T	p.Glu418Ter	p.E418*	ENST00000332351	NM_024426.4	418	Gag/Tag																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18544155	18544155	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			264	54	551	0	ENST00000266497.5:c.1972G>C	p.Ala658Pro	p.A658P	ENST00000266497		658	Gcc/Ccc																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864564	57864564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			980	87	1498	0	ENST00000228682.2:c.2041C>A	p.Pro681Thr	p.P681T	ENST00000228682	NM_005269.2	681	Cca/Aca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913959	32913959	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			465	50	759	0	ENST00000380152.3:c.5467A>G	p.Lys1823Glu	p.K1823E	ENST00000380152		1823	Aaa/Gaa																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103508416	103508421	+	inframe_deletion	In_Frame_Del	DEL	ATGAAA	ATGAAA	-			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			136	57	301	0	ENST00000355739.4:c.483_488del	p.Asp161_Lys163delinsGlu	p.D161_K163delinsE	ENST00000355739	NM_000123.3	161	gATGAAAaa/gaa																																																																															
FANCA	2175	MSKCC	GRCh37	16	89869674	89869675	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			673	105	1096	0	ENST00000389301.3:c.784dup	p.Met262AsnfsTer7	p.M262Nfs*7	ENST00000389301	NM_000135.2	262	atg/aAtg																																																																															
CIC	23152	MSKCC	GRCh37	19	42791212	42791212	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			565	514	1445	0	ENST00000575354.2:c.272G>C	p.Ser91Thr	p.S91T	ENST00000575354	NM_015125.3	91	aGt/aCt																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855593	45855593	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			311	445	1350	0	ENST00000391945.4:c.2064C>A	p.Asp688Glu	p.D688E	ENST00000391945	NM_000400.3	688	gaC/gaA																																																																															
RRAS	6237	MSKCC	GRCh37	19	50143337	50143338	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGC			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			40	12	80	0	ENST00000246792.3:c.16_18dup	p.Ala6dup	p.A6dup	ENST00000246792	NM_006270.3	6	-/GCG																																																																															
MST1R	4486	MSKCC	GRCh37	3	49924814	49924814	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			566	432	1609	0	ENST00000296474.3:c.4129C>T	p.Gln1377Ter	p.Q1377*	ENST00000296474	NM_002447.2	1377	Cag/Tag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467989	66467989	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			255	22	444	1	ENST00000273854.3:c.280G>T	p.Ala94Ser	p.A94S	ENST00000273854	NM_004439.5	94	Gcc/Tcc																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271250	26271250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			673	82	966	0	ENST00000305910.3:c.363G>T	p.Met121Ile	p.M121I	ENST00000305910	NM_003534.2	121	atG/atT																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798075	32798075	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			826	347	1402	0	ENST00000374899.4:c.1604C>G	p.Ser535Ter	p.S535*	ENST00000374899	NM_018833.2	535	tCa/tGa																																																																															
MET	4233	MSKCC	GRCh37	7	116395407	116395407	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			314	59	676	0	ENST00000397752.3:c.1702-2A>T		p.X568_splice	ENST00000397752	NM_000245.2	568																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8389233	8389233	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			410	54	640	0	ENST00000356435.5:c.4385G>A	p.Arg1462Lys	p.R1462K	ENST00000356435		1462	aGg/aAg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8486337	8486337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			130	192	481	0	ENST00000356435.5:c.2480C>T	p.Pro827Leu	p.P827L	ENST00000356435		827	cCt/cTt																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300086	137300086	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			624	252	1528	0	ENST00000481739.1:c.371C>G	p.Ser124Ter	p.S124*	ENST00000481739	NM_002957.4	124	tCa/tGa																																																																															
RXRA	6256	MSKCC	GRCh37	9	137309083	137309083	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			762	123	1676	0	ENST00000481739.1:c.690G>T	p.Met230Ile	p.M230I	ENST00000481739	NM_002957.4	230	atG/atT																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139407933	139407933	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047750-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			638	301	1376	0	ENST00000277541.6:c.2264A>G	p.Asn755Ser	p.N755S	ENST00000277541	NM_017617.3	755	aAt/aGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577062	7577062	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046203-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			927	197	1046	0	ENST00000269305.4:c.876delA	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	292	aaA/aa																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100077	157100078	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTGGCG			P-0046203-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			36	26	52	0	ENST00000346085.5:c.1016_1021dupTGGCGG	p.Val339_Ala340dup	p.V339_A340dup	ENST00000346085	NM_020732.3	339	-/GTGGCG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398286	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0046203-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			413	199	483	0	ENST00000256078.4:c.33_34delinsCT	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	11	gcTGgt/gcCTgt																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2221305	2221305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046203-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			816	591	1360	0	ENST00000326181.6:c.389G>A	p.Cys130Tyr	p.C130Y	ENST00000326181	NM_032271.2	130	tGc/tAc																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448601	89448601	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046203-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			587	84	632	0	ENST00000336596.2:c.1565G>T	p.Arg522Leu	p.R522L	ENST00000336596	NM_005233.5	522	cGc/cTc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25466797	25466797	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046203-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			835	109	861	0	ENST00000264709.3:c.1906G>T	p.Val636Leu	p.V636L	ENST00000264709	NM_175629.2	636	Gtg/Ttg																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279860	46279861	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCAA			P-0046203-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			793	81	731	0	ENST00000371998.3:c.3810_3815dupACAGCA	p.Gln1275_Gln1276dup	p.Q1275_Q1276dup	ENST00000371998		1275	-/CAGCAA																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625399	69625399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046203-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			558	639	1284	0	ENST00000334134.2:c.394C>T	p.Arg132Trp	p.R132W	ENST00000334134	NM_005247.2	132	Cgg/Tgg																																																																															
ATM	472	MSKCC	GRCh37	11	108100051	108100052	+	splice_donor_variant	Splice_Site	DNP	GT	GT	TA			P-0046203-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			186	36	243	0	ENST00000278616.4:c.331+1_331+2delinsTA		p.X111_splice	ENST00000278616	NM_000051.3	111																																																																																
MGA	23269	MSKCC	GRCh37	15	42052630	42052630	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046203-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			437	103	571	0	ENST00000219905.7:c.7302del	p.Arg2435GlyfsTer5	p.R2435Gfs*5	ENST00000219905	NM_001164273.1	2434	cGg/cg																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30129361	30129393	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCCTACCTTGGAGTTCAGCATGATCTCTGGGG	CTCCTACCTTGGAGTTCAGCATGATCTCTGGGG	-			P-0046203-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			719	65	790	0	ENST00000263025.4:c.635_660+7del		p.X212_splice	ENST00000263025	NM_002746.2	212																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72829044	72829045	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0046203-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			658	88	1009	1	ENST00000268489.5:c.7536_7537delinsAG	p.His2513Asp	p.H2513D	ENST00000268489	NM_006885.3	2512	ctCCac/ctAGac																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805363	89805363	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046203-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			699	47	728	0	ENST00000389301.3:c.4187T>A	p.Ile1396Lys	p.I1396K	ENST00000389301	NM_000135.2	1396	aTa/aAa																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99189286	99189286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046203-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			636	38	594	0	ENST00000074304.5:c.2542C>T	p.Arg848Trp	p.R848W	ENST00000074304	NM_001134224.1	848	Cgg/Tgg																																																																															
CCND3	896	MSKCC	GRCh37	6	41909332	41909332	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046203-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			814	263	928	0	ENST00000372991.4:c.56C>G	p.Pro19Arg	p.P19R	ENST00000372991	NM_001760.3	19	cCg/cGg																																																																															
ARAF	369	MSKCC	GRCh37	X	47426104	47426104	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046203-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			996	53	1053	0	ENST00000377045.4:c.624G>C	p.Gln208His	p.Q208H	ENST00000377045	NM_001654.4	208	caG/caC																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0046291-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			828	119	1205	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																															
SETD2	29072	MSKCC	GRCh37	3	47205396	47205396	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046291-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			312	222	716	0	ENST00000409792.3:c.19C>T	p.Gln7Ter	p.Q7*	ENST00000409792	NM_014159.6	7	Cag/Tag																																																																															
WT1	7490	MSKCC	GRCh37	11	32456619	32456621	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0046291-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			242	14	309	0	ENST00000332351.3:c.271_273del	p.Gly91del	p.G91del	ENST00000332351	NM_024426.4	91	GGC/-																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281608	15281608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046291-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			874	324	1397	4	ENST00000263388.2:c.4765C>T	p.Arg1589Trp	p.R1589W	ENST00000263388	NM_000435.2	1589	Cgg/Tgg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134985	2134985	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046291-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			904	60	1365	0	ENST00000219476.3:c.4527C>G	p.Phe1509Leu	p.F1509L	ENST00000219476	NM_000548.3	1509	ttC/ttG																																																																															
MALT1	10892	MSKCC	GRCh37	18	56400773	56400773	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046291-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			114	28	430	0	ENST00000348428.3:c.1367T>C	p.Leu456Pro	p.L456P	ENST00000348428	NM_006785.3	456	cTt/cCt																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5215366	5215366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046291-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			608	272	1191	2	ENST00000357368.4:c.4252C>T	p.Pro1418Ser	p.P1418S	ENST00000357368	NM_002850.3	1418	Ccg/Tcg																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151876995	151876995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046291-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			234	195	668	1	ENST00000262189.6:c.7366G>A	p.Ala2456Thr	p.A2456T	ENST00000262189	NM_170606.2	2456	Gct/Act																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0043641-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			740	457	1249	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043641-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			603	321	1518	1	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351373	89351373	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043641-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			589	506	1603	1	ENST00000301030.4:c.1577A>T	p.His526Leu	p.H526L	ENST00000301030	NM_001256183.1	526	cAc/cTc																																																																															
ATRX	546	MSKCC	GRCh37	X	76939448	76939448	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043641-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			761	193	991	0	ENST00000373344.5:c.1300G>T	p.Val434Phe	p.V434F	ENST00000373344	NM_000489.3	434	Gtc/Ttc																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8073722	8073722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043641-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			396	109	654	1	ENST00000377482.5:c.937G>A	p.Glu313Lys	p.E313K	ENST00000377482	NM_018948.3	313	Gaa/Aaa																																																																															
TBX3	6926	MSKCC	GRCh37	12	115111978	115111978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043641-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			841	76	1532	0	ENST00000257566.3:c.1762G>A	p.Ala588Thr	p.A588T	ENST00000257566	NM_016569.3	588	Gcc/Acc																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609327	81609327	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043641-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			342	23	482	0	ENST00000298171.2:c.925T>G	p.Leu309Val	p.L309V	ENST00000298171	NM_000369.2	309	Ttg/Gtg																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056704	180056704	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043641-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			859	85	1265	0	ENST00000261937.6:c.808G>T	p.Gly270Trp	p.G270W	ENST00000261937	NM_182925.4	270	Ggg/Tgg																																																																															
GNA11	2767	MSKCC	GRCh37	19	3113446	3113446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045448-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			270	58	689	1	ENST00000078429.4:c.440G>A	p.Arg147His	p.R147H	ENST00000078429	NM_002067.2	147	cGc/cAc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527964	103527964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045448-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			26	35	333	0	ENST00000355739.4:c.3272C>T	p.Thr1091Ile	p.T1091I	ENST00000355739	NM_000123.3	1091	aCc/aTc																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061212	38061238	+	inframe_deletion	In_Frame_Del	DEL	GTAGCAGCCGTTCTCGAACATGTTGCC	GTAGCAGCCGTTCTCGAACATGTTGCC	-			P-0045448-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			328	124	535	0	ENST00000250448.2:c.751_777del	p.Gly251_Tyr259del	p.G251_Y259del	ENST00000250448	NM_004496.3	251	GGCAACATGTTCGAGAACGGCTGCTAC/-																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249427	153249427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045448-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			71	43	400	1	ENST00000281708.4:c.1351G>A	p.Gly451Arg	p.G451R	ENST00000281708	NM_033632.3	451	Gga/Aga																																																																															
TEK	7010	MSKCC	GRCh37	9	27206761	27206761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045448-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			81	105	458	1	ENST00000380036.4:c.2546G>A	p.Arg849Gln	p.R849Q	ENST00000380036	NM_000459.3	849	cGg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0045174-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			649	50	686	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0041827-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			496	61	685	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
STK11	6794	MSKCC	GRCh37	19	1207146	1207146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041827-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			960	166	1495	2	ENST00000326873.7:c.234G>T	p.Lys78Asn	p.K78N	ENST00000326873	NM_000455.4	78	aaG/aaT																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151948046	151948046	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041827-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			382	21	644	0	ENST00000262189.6:c.1627A>T	p.Asn543Tyr	p.N543Y	ENST00000262189	NM_170606.2	543	Aac/Tac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034490	47034490	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0041827-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			930	78	958	0	ENST00000329236.7:c.344A>T	p.Gln115Leu	p.Q115L	ENST00000329236	NM_001204466.1	115	cAg/cTg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042155-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			555	102	784	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0042155-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			686	142	956	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0042155-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			780	194	1303	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416663	121416663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042155-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			615	477	1170	1	ENST00000257555.6:c.92G>A	p.Gly31Asp	p.G31D	ENST00000257555		31	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112174558	112174558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042155-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			640	117	753	0	ENST00000257430.4:c.3267C>A	p.Phe1089Leu	p.F1089L	ENST00000257430	NM_000038.5	1089	ttC/ttA																																																																															
ESR1	2099	MSKCC	GRCh37	6	152265313	152265313	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042155-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			415	47	572	2	ENST00000206249.3:c.766C>T	p.Arg256Ter	p.R256*	ENST00000206249	NM_000125.3	256	Cga/Tga																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119884	70119884	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042155-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			798	175	1022	1	ENST00000245479.2:c.886C>T	p.Gln296Ter	p.Q296*	ENST00000245479	NM_000346.3	296	Cag/Tag																																																																															
APC	324	MSKCC	GRCh37	5	112175822	112175823	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0042155-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			426	81	544	0	ENST00000257430.4:c.4532_4533del	p.Leu1511ArgfsTer2	p.L1511Rfs*2	ENST00000257430	NM_000038.5	1511	CTc/c																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81965124	81965124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042155-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			739	72	1038	0	ENST00000359376.3:c.2604C>A	p.Asn868Lys	p.N868K	ENST00000359376	NM_002661.3	868	aaC/aaA																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49438650	49438650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042155-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			768	168	1263	3	ENST00000301067.7:c.4840C>T	p.Arg1614Trp	p.R1614W	ENST00000301067	NM_003482.3	1614	Cgg/Tgg																																																																															
CDC73	79577	MSKCC	GRCh37	1	193181534	193181534	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042155-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			266	316	793	0	ENST00000367435.3:c.1081A>G	p.Ile361Val	p.I361V	ENST00000367435	NM_024529.4	361	Att/Gtt																																																																															
FH	2271	MSKCC	GRCh37	1	241667434	241667434	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042155-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			757	69	869	1	ENST00000366560.3:c.1016C>T	p.Ala339Val	p.A339V	ENST00000366560	NM_000143.3	339	gCa/gTa																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88726695	88726695	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042155-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			870	50	916	1	ENST00000360948.2:c.349A>T	p.Ser117Cys	p.S117C	ENST00000360948	NM_001012338.2	117	Agc/Tgc																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62321140	62321140	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042155-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			624	502	1272	0	ENST00000508582.2:c.2135C>G	p.Ser712Cys	p.S712C	ENST00000508582		712	tCc/tGc																																																																															
APC	324	MSKCC	GRCh37	5	112174516	112174516	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0042155-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			509	82	679	0	ENST00000257430.4:c.3225T>A	p.Tyr1075Ter	p.Y1075*	ENST00000257430	NM_000038.5	1075	taT/taA																																																																															
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0002080-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			167	177	548	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																															
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0002080-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			365	78	384	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																															
APC	324	MSKCC	GRCh37	5	112175324	112175324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002080-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			209	160	345	1	ENST00000257430.4:c.4033G>T	p.Glu1345Ter	p.E1345*	ENST00000257430	NM_000038.5	1345	Gaa/Taa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002080-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			162	144	424	0	ENST00000262160.6:c.1391C>A	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tAa																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368226	45368226	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002080-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			173	147	487	0	ENST00000262160.6:c.1376C>A	p.Pro459His	p.P459H	ENST00000262160	NM_005901.5	459	cCt/cAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0002080-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			367	210	427	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																															
MED12	9968	MSKCC	GRCh37	X	70342988	70342988	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002167-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			25	107	200	1	ENST00000374080.3:c.1529G>A	p.Trp510Ter	p.W510*	ENST00000374080		510	tGg/tAg																																																																															
ATRX	546	MSKCC	GRCh37	X	76814176	76814176	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002167-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			34	76	305	2	ENST00000373344.5:c.6468A>T	p.Gln2156His	p.Q2156H	ENST00000373344	NM_000489.3	2156	caA/caT																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577268	64577269	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002167-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			83	155	331	4	ENST00000337652.1:c.313dup	p.Leu105ProfsTer12	p.L105Pfs*12	ENST00000337652	NM_130803.2	105	ctc/cCtc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0014176-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			139	484	573	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25497950	25497950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014176-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			516	49	441	3	ENST00000264709.3:c.499C>T	p.Arg167Trp	p.R167W	ENST00000264709	NM_175629.2	167	Cgg/Tgg																																																																															
TET1	80312	MSKCC	GRCh37	10	70333539	70333539	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014176-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			457	82	896	0	ENST00000373644.4:c.1444A>C	p.Asn482His	p.N482H	ENST00000373644	NM_030625.2	482	Aac/Cac																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710573	117710573	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014176-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			91	324	855	1	ENST00000368508.3:c.1699C>G	p.Leu567Val	p.L567V	ENST00000368508	NM_002944.2	567	Ctg/Gtg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610522	81610522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014176-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			322	387	980	0	ENST00000298171.2:c.2120G>A	p.Arg707Gln	p.R707Q	ENST00000298171	NM_000369.2	707	cGg/cAg																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933754	36933754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014176-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			1174	490	1652	2	ENST00000361632.4:c.1645C>T	p.Pro549Ser	p.P549S	ENST00000361632		549	Cct/Tct																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813432	102813432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014176-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			406	278	629	2	ENST00000307046.8:c.257C>T	p.Ala86Val	p.A86V	ENST00000307046	NM_001111285.1	86	gCg/gTg																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121435310	121435310	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014176-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			473	286	753	0	ENST00000257555.6:c.1343T>C	p.Val448Ala	p.V448A	ENST00000257555		448	gTc/gCc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355057	73355057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014176-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			460	89	996	2	ENST00000377767.4:c.313G>A	p.Val105Ile	p.V105I	ENST00000377767	NM_014953.3	105	Gta/Ata																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024758	31024758	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014176-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			520	466	1023	0	ENST00000375687.4:c.4243C>G	p.Arg1415Gly	p.R1415G	ENST00000375687	NM_015338.5	1415	Cga/Gga																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71247393	71247393	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014176-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			483	94	1031	0	ENST00000318789.4:c.140G>C	p.Gly47Ala	p.G47A	ENST00000318789	NM_032682.5	47	gGg/gCg																																																																															
APC	324	MSKCC	GRCh37	5	112176111	112176111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014176-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			228	396	970	0	ENST00000257430.4:c.4820G>C	p.Arg1607Thr	p.R1607T	ENST00000257430	NM_000038.5	1607	aGg/aCg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721426	176721426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014176-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			493	85	923	2	ENST00000439151.2:c.7057C>T	p.Pro2353Ser	p.P2353S	ENST00000439151	NM_022455.4	2353	Cct/Tct																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971211	21971211	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0014176-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			23	27	274	0	ENST00000304494.5:c.151-4G>C		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																																
GATA1	2623	MSKCC	GRCh37	X	48649629	48649629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014176-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			749	173	1220	0	ENST00000376670.3:c.113C>T	p.Pro38Leu	p.P38L	ENST00000376670	NM_002049.3	38	cCt/cTt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562482	21562483	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGGCG	rs550642106		P-0015434-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			170	11	180	0	ENST00000382592.4:c.1431_1436dup	p.Pro479_Ala480dup	p.P479_A480dup	ENST00000382592	NM_014572.2	479	ccg/ccCGCCCCg																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435766	110435766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015434-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			267	248	389	20	ENST00000375856.3:c.2635G>A	p.Gly879Ser	p.G879S	ENST00000375856	NM_003749.2	879	Ggc/Agc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0015434-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			901	329	1738	4	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211375	36211377	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs199534880		P-0015434-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			679	569	1183	0	ENST00000222270.7:c.1126_1128del	p.Lys376del	p.K376del	ENST00000222270	NM_014727.1	376	AAG/-																																																																															
DDR2	4921	MSKCC	GRCh37	1	162740272	162740272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015434-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			436	368	669	0	ENST00000367921.3:c.1474C>T	p.Pro492Ser	p.P492S	ENST00000367921	NM_006182.2	492	Cca/Tca																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690791	89690795	+	splice_region_variant,intron_variant	Splice_Region	DEL	CTTTT	CTTTT	-			P-0015434-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			172	159	371	0	ENST00000371953.3:c.210-7_210-3delCTTTT		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49424072	49424072	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015434-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			707	601	1426	0	ENST00000301067.7:c.13990G>T	p.Ala4664Ser	p.A4664S	ENST00000301067	NM_003482.3	4664	Gca/Tca																																																																															
BRCA2	675	MSKCC	GRCh37	13	32900409	32900409	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015434-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			277	251	441	0	ENST00000380152.3:c.506A>G	p.Lys169Arg	p.K169R	ENST00000380152		169	aAg/aGg																																																																															
MGA	23269	MSKCC	GRCh37	15	41961606	41961606	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015434-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			666	147	581	0	ENST00000219905.7:c.514C>T	p.Gln172Ter	p.Q172*	ENST00000219905	NM_001164273.1	172	Caa/Taa																																																																															
ALK	238	MSKCC	GRCh37	2	29448386	29448386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015434-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			865	280	1444	0	ENST00000389048.3:c.3113C>T	p.Ser1038Phe	p.S1038F	ENST00000389048	NM_004304.4	1038	tCt/tTt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971168	21971178	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCAGCTCC	GCAGCAGCTCC	CCA			P-0015434-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			480	142	751	3	ENST00000304494.5:c.180_190delGGAGCTGCTGCinsTGG	p.Glu61GlyfsTer56	p.E61Gfs*56	ENST00000304494	NM_000077.4	60	gcGGAGCTGCTGCtg/gcTGGtg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040381-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			665	251	1543	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0040381-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			581	290	793	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
SMO	6608	MSKCC	GRCh37	7	128829152	128829152	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs541359801		P-0040381-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			33	42	140	0	ENST00000249373.3:c.160G>A	p.Val54Met	p.V54M	ENST00000249373	NM_005631.4	54	Gtg/Atg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79950709	79950717	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGGCC	GCAGCGGCC	-			P-0040381-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			173	40	285	0	ENST00000265081.6:c.178_186delGCCGCAGCG	p.Ala60_Ala62del	p.A60_A62del	ENST00000265081	NM_002439.4	55	GCAGCGGCC/-																																																																															
RB1	5925	MSKCC	GRCh37	13	48937094	48937094	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0040381-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			222	73	310	0	ENST00000267163.4:c.861+1G>A		p.X287_splice	ENST00000267163	NM_000321.2	287																																																																																
ATM	472	MSKCC	GRCh37	11	108200991	108200991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040381-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			343	139	756	0	ENST00000278616.4:c.7358G>A	p.Arg2453His	p.R2453H	ENST00000278616	NM_000051.3	2453	cGt/cAt																																																																															
MGA	23269	MSKCC	GRCh37	15	42005386	42005386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040381-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			315	395	948	1	ENST00000219905.7:c.3122G>T	p.Arg1041Met	p.R1041M	ENST00000219905	NM_001164273.1	1041	aGg/aTg																																																																															
ATR	545	MSKCC	GRCh37	3	142279112	142279112	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040381-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			266	191	538	0	ENST00000350721.4:c.1534A>T	p.Met512Leu	p.M512L	ENST00000350721	NM_001184.3	512	Atg/Ttg																																																																															
ROS1	6098	MSKCC	GRCh37	6	117683841	117683841	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040381-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			287	344	723	0	ENST00000368508.3:c.3306T>G	p.Ile1102Met	p.I1102M	ENST00000368508	NM_002944.2	1102	atT/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs878854073		P-0004707-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			304	276	121	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																																
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520017		P-0004707-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			440	199	171	0	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																															
MTOR	2475	MSKCC	GRCh37	1	11288724	11288724	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0004707-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			554	42	185	0	ENST00000361445.4:c.3030+1G>T		p.X1010_splice	ENST00000361445	NM_004958.3	1010																																																																																
JAK1	3716	MSKCC	GRCh37	1	65332885	65332885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004707-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			389	172	98	0	ENST00000342505.4:c.654G>T	p.Lys218Asn	p.K218N	ENST00000342505	NM_002227.2	218	aaG/aaT																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25464430	25464430	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0004707-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			408	84	156	0	ENST00000264709.3:c.2082+1G>T		p.X694_splice	ENST00000264709	NM_175629.2	694																																																																																
BAP1	8314	MSKCC	GRCh37	3	52439834	52439834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004707-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			271	430	211	1	ENST00000460680.1:c.878C>T	p.Pro293Leu	p.P293L	ENST00000460680	NM_004656.3	293	cCg/cTg																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205124	128205124	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004707-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			766	62	141	0	ENST00000341105.2:c.317C>G	p.Ser106Cys	p.S106C	ENST00000341105	NM_032638.4	106	tCt/tGt																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911498	134911498	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004707-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			474	136	135	0	ENST00000398015.3:c.1963G>T	p.Ala655Ser	p.A655S	ENST00000398015	NM_004441.4	655	Gca/Tca																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750502	41750502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004707-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			518	60	178	0	ENST00000226382.2:c.126C>A	p.Phe42Leu	p.F42L	ENST00000226382	NM_003924.3	42	ttC/ttA																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143044507	143044507	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004707-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			549	66	159	0	ENST00000262992.4:c.1955T>A	p.Phe652Tyr	p.F652Y	ENST00000262992	NM_001101669.1	652	tTc/tAc																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106524623	106524623	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004707-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			546	52	127	0	ENST00000359195.3:c.2784T>A	p.Phe928Leu	p.F928L	ENST00000359195	NM_002649.2	928	ttT/ttA																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518085	8518085	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs202222673		P-0004707-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			538	142	194	0	ENST00000356435.5:c.1306G>T	p.Val436Leu	p.V436L	ENST00000356435		436	Gta/Tta																																																																															
RET	5979	MSKCC	GRCh37	10	43614979	43614979	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0004707-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			514	161	151	1	ENST00000355710.3:c.2393G>T	p.Gly798Val	p.G798V	ENST00000355710	NM_020975.4	798	gGc/gTc																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18446909	18446909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004707-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			616	180	144	0	ENST00000266497.5:c.994C>A	p.His332Asn	p.H332N	ENST00000266497		332	Cat/Aat																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49444249	49444249	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004707-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			637	273	289	0	ENST00000301067.7:c.3122A>T	p.Gln1041Leu	p.Q1041L	ENST00000301067	NM_003482.3	1041	cAg/cTg																																																																															
RB1	5925	MSKCC	GRCh37	13	48951141	48951141	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004707-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			537	74	174	0	ENST00000267163.4:c.1303G>T	p.Gly435Ter	p.G435*	ENST00000267163	NM_000321.2	435	Gga/Tga																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3799657	3799657	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004707-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			520	47	113	0	ENST00000262367.5:c.3807G>C	p.Lys1269Asn	p.K1269N	ENST00000262367	NM_004380.2	1269	aaG/aaC																																																																															
CDH1	999	MSKCC	GRCh37	16	68867394	68867394	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004707-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			362	112	164	0	ENST00000261769.5:c.2641G>C	p.Asp881His	p.D881H	ENST00000261769	NM_004360.3	881	Gac/Cac																																																																															
INSR	3643	MSKCC	GRCh37	19	7166262	7166262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004707-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			429	171	183	0	ENST00000302850.5:c.1764G>T	p.Gln588His	p.Q588H	ENST00000302850	NM_000208.2	588	caG/caT																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15295728	15295728	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004707-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			436	198	200	0	ENST00000263388.2:c.2399A>T	p.Gln800Leu	p.Q800L	ENST00000263388	NM_000435.2	800	cAg/cTg																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921540	39921540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004707-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			765	162	182	0	ENST00000378444.4:c.4280C>T	p.Pro1427Leu	p.P1427L	ENST00000378444	NM_001123385.1	1427	cCa/cTa																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739683	41739684	+	missense_variant	Missense_Mutation	DNP	TC	TC	CT			P-0004707-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			1012	64	318	0	ENST00000242208.4:c.289_290delinsAG	p.Glu97Arg	p.E97R	ENST00000242208	NM_002192.2	97	GAg/AGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040165-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			605	124	734	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
FLT3	2322	MSKCC	GRCh37	13	28588626	28588626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040165-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			416	396	632	0	ENST00000241453.7:c.2822C>T	p.Ser941Leu	p.S941L	ENST00000241453	NM_004119.2	941	tCg/tTg																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045654	26045654	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040165-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			235	191	376	0	ENST00000540144.1:c.16C>T	p.Gln6Ter	p.Q6*	ENST00000540144	NM_003531.2	6	Caa/Taa																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755669	57755670	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040165-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			797	178	848	0	ENST00000274289.3:c.117dupC	p.Glu40ArgfsTer66	p.E40Rfs*66	ENST00000274289	NM_006622.3	39	-/C																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925684	114925684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040165-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			386	531	830	0	ENST00000543371.1:c.1762G>A	p.Gly588Arg	p.G588R	ENST00000543371	NM_001198531.1	588	Ggg/Agg																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264428	30264428	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040165-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			339	370	635	0	ENST00000322652.5:c.163T>G	p.Ser55Ala	p.S55A	ENST00000322652	NM_015355.2	55	Tcc/Gcc																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868107	45868107	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040165-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			904	86	927	1	ENST00000391945.4:c.583G>T	p.Ala195Ser	p.A195S	ENST00000391945	NM_000400.3	195	Gct/Tct																																																																															
IRS1	3667	MSKCC	GRCh37	2	227659848	227659848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040165-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			651	118	726	0	ENST00000305123.5:c.3607C>T	p.Pro1203Ser	p.P1203S	ENST00000305123	NM_005544.2	1203	Cca/Tca																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62309528	62309528	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040165-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			917	118	950	0	ENST00000508582.2:c.1022A>G	p.Lys341Arg	p.K341R	ENST00000508582		341	aAg/aGg																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103780	47103780	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040165-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			597	82	707	0	ENST00000409792.3:c.6166A>T	p.Thr2056Ser	p.T2056S	ENST00000409792	NM_014159.6	2056	Act/Tct																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0040078-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			1009	298	1057	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
BARD1	580	MSKCC	GRCh37	2	215645503	215645523	+	inframe_deletion	In_Frame_Del	DEL	TGGTGAAGAACATTCAGGCAA	TGGTGAAGAACATTCAGGCAA	-			P-0040078-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			343	333	927	0	ENST00000260947.4:c.1075_1095delTTGCCTGAATGTTCTTCACCA	p.Leu359_Pro365del	p.L359_P365del	ENST00000260947	NM_000465.2	359	TTGCCTGAATGTTCTTCACCA/-																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675512	30675512	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040078-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			506	550	1310	1	ENST00000376406.3:c.2844A>C	p.Arg948Ser	p.R948S	ENST00000376406	NM_014641.2	948	agA/agC																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057520005		P-0040078-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			615	303	1262	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821619	72821621	+	inframe_deletion	In_Frame_Del	DEL	CCG	CCG	-			P-0040078-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			48	36	88	0	ENST00000268489.5:c.10554_10556delCGG	p.Gly3527del	p.G3527del	ENST00000268489	NM_006885.3	3518	ggCGGt/ggt																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46279861	46279866	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0040078-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			255	143	913	2	ENST00000371998.3:c.3810_3815delACAGCA	p.Gln1275_Gln1276del	p.Q1275_Q1276del	ENST00000371998		1263	CAGCAA/-																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831358	72831363	+	inframe_deletion	In_Frame_Del	DEL	TTGTTG	TTGTTG	-			P-0040078-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			348	91	651	1	ENST00000268489.5:c.5218_5223delCAACAA	p.Gln1740_Gln1741del	p.Q1740_Q1741del	ENST00000268489	NM_006885.3	1740	CAACAA/-																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143129616	143129616	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040078-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			171	201	552	0	ENST00000262992.4:c.1034A>G	p.His345Arg	p.H345R	ENST00000262992	NM_001101669.1	345	cAt/cGt																																																																															
ATRX	546	MSKCC	GRCh37	X	76849300	76849302	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0040078-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			42	219	519	0	ENST00000373344.5:c.5974_5976del	p.Ser1992del	p.S1992del	ENST00000373344	NM_000489.3	1992	TCT/-																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27024024	27024024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040078-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			54	58	163	0	ENST00000324856.7:c.1130C>T	p.Thr377Ile	p.T377I	ENST00000324856	NM_006015.4	377	aCc/aTc																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112888230	112888230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040078-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			497	73	813	0	ENST00000351677.2:c.246G>A	p.Met82Ile	p.M82I	ENST00000351677	NM_002834.3	82	atG/atA																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961865	15961865	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040078-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			333	165	635	0	ENST00000268712.3:c.5930G>C	p.Ser1977Thr	p.S1977T	ENST00000268712	NM_006311.3	1977	aGt/aCt																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259214	89259214	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040078-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			375	122	593	0	ENST00000336596.2:c.358T>A	p.Phe120Ile	p.F120I	ENST00000336596	NM_005233.5	120	Ttc/Atc																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149245680	149245680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040078-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			536	377	1050	0	ENST00000360632.3:c.848C>T	p.Thr283Met	p.T283M	ENST00000360632	NM_015472.4	283	aCg/aTg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178617	56178617	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763984353		P-0040078-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			186	172	372	0	ENST00000399503.3:c.3590C>T	p.Ala1197Val	p.A1197V	ENST00000399503	NM_005921.1	1197	gCg/gTg																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562819	176562819	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040078-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			677	336	876	0	ENST00000439151.2:c.715A>G	p.Lys239Glu	p.K239E	ENST00000439151	NM_022455.4	239	Aag/Gag																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180684	32180684	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs150079294		P-0000036-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			153	143	238	1	ENST00000375023.3:c.2443T>G	p.Cys815Gly	p.C815G	ENST00000375023	NM_004557.3	815	Tgt/Ggt																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662073	227662073	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs138145752		P-0000036-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			232	186	242	0	ENST00000305123.5:c.1382A>G	p.Glu461Gly	p.E461G	ENST00000305123	NM_005544.2	461	gAg/gGg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81528523	81528523	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142063461		P-0000036-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			259	257	340	0	ENST00000298171.2:c.202C>T	p.Pro68Ser	p.P68S	ENST00000298171	NM_000369.2	68	Cca/Tca																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0000036-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			293	18	215	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37883141	37883141	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140272156		P-0000036-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			205	149	287	0	ENST00000269571.5:c.3044G>A	p.Gly1015Glu	p.G1015E	ENST00000269571		1015	gGg/gAg																																																																															
AR	367	MSKCC	GRCh37	X	66765664	66765664	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000036-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			505	79	264	0	ENST00000374690.3:c.676T>G	p.Leu226Val	p.L226V	ENST00000374690	NM_000044.3	226	Tta/Gta																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332612	153332620	+	inframe_deletion	In_Frame_Del	DEL	TCCTCCTCA	TCCTCCTCA	-			P-0000036-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			228	150	314	0	ENST00000281708.4:c.336_344del	p.Asp112_Glu114del	p.D112_E114del	ENST00000281708	NM_033632.3	112	gaTGAGGAGGAg/gag																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0001269-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			341	45	409	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748383	162748383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001269-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			551	91	358	0	ENST00000367921.3:c.2297C>T	p.Thr766Ile	p.T766I	ENST00000367921	NM_006182.2	766	aCa/aTa																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880984	37880985	+	inframe_insertion	In_Frame_Ins	INS	-	-	TACGTGATGGCT			P-0001269-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			666	80	524	0	ENST00000269571.5:c.2314_2325dupTACGTGATGGCT	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/TACGTGATGGCT																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100289	8100289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002241-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			593	282	256	0	ENST00000346208.3:c.263C>T	p.Pro88Leu	p.P88L	ENST00000346208		88	cCt/cTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578238	7578239	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCACACGC			P-0002241-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			420	182	323	0	ENST00000269305.4:c.603_610dup	p.Glu204GlyfsTer46	p.E204Gfs*46	ENST00000269305	NM_001126112.2	204	gag/gGCGTGTGGag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002511-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			159	58	311	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0002516-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			105	562	571	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004474-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			794	362	628	0	ENST00000269305.4:c.833delC	p.Pro278LeufsTer67	p.P278Lfs*67	ENST00000269305	NM_001126112.2	278	cCt/ct																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738411	145738416	+	inframe_deletion	In_Frame_Del	DEL	GGTGCA	GGTGCA	-			P-0004474-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			772	311	378	1	ENST00000428558.2:c.2569_2574delTGCACC	p.Cys857_Thr858del	p.C857_T858del	ENST00000428558	NM_004260.3	857	TGCACC/-																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36933510	36933510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004474-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			698	640	747	1	ENST00000361632.4:c.1777G>A	p.Ala593Thr	p.A593T	ENST00000361632		593	Gcc/Acc																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376160	118376160	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004474-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			634	585	391	0	ENST00000534358.1:c.9553T>C	p.Ser3185Pro	p.S3185P	ENST00000534358	NM_005933.3	3185	Tca/Cca																																																																															
POLE	5426	MSKCC	GRCh37	12	133220039	133220039	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004474-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			833	61	451	0	ENST00000320574.5:c.4398G>T	p.Glu1466Asp	p.E1466D	ENST00000320574	NM_006231.2	1466	gaG/gaT																																																																															
TSC2	7249	MSKCC	GRCh37	16	2127634	2127634	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004474-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			559	556	524	1	ENST00000219476.3:c.2873A>G	p.Asn958Ser	p.N958S	ENST00000219476	NM_000548.3	958	aAt/aGt																																																																															
AR	367	MSKCC	GRCh37	X	66931295	66931295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004474-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			14	888	457	2	ENST00000374690.3:c.1937C>A	p.Ala646Asp	p.A646D	ENST00000374690	NM_000044.3	646	gCt/gAt																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010710-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			690	285	754	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579415	7579415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010710-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			614	365	761	2	ENST00000269305.4:c.272G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tGg/tAg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0010710-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			738	442	990	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0010710-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			831	125	939	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																															
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010710-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			516	84	713	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395657	45395657	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010710-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			743	372	1109	0	ENST00000262160.6:c.477del	p.Val160TyrfsTer3	p.V160Yfs*3	ENST00000262160	NM_005901.5	159	gaA/ga																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0036701-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			339	200	955	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416663	121416663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036701-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			323	275	1040	0	ENST00000257555.6:c.92G>A	p.Gly31Asp	p.G31D	ENST00000257555		31	gGt/gAt																																																																															
AXL	558	MSKCC	GRCh37	19	41726603	41726603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036701-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			220	259	945	1	ENST00000301178.4:c.148C>T	p.Leu50Phe	p.L50F	ENST00000301178	NM_021913.4	50	Ctc/Ttc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036701-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			701	177	1275	1	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625219	69625219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036701-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			397	193	1177	4	ENST00000334134.2:c.574C>T	p.Arg192Trp	p.R192W	ENST00000334134	NM_005247.2	192	Cgg/Tgg																																																																															
APC	324	MSKCC	GRCh37	5	112175351	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036701-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			164	27	338	0	ENST00000257430.4:c.4063del	p.Ser1355LeufsTer60	p.S1355Lfs*60	ENST00000257430	NM_000038.5	1354	Ttt/tt																																																																															
MDC1	9656	MSKCC	GRCh37	6	30681077	30681101	+	protein_altering_variant	In_Frame_Del	DEL	GAAGGCAAAAGGCGGCCCAAGGCCG	GAAGGCAAAAGGCGGCCCAAGGCCG	C			P-0036701-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			230	194	660	0	ENST00000376406.3:c.618_642delinsG	p.Gly207_Phe214del	p.G207_F214del	ENST00000376406	NM_014641.2	206	ggCGGCCTTGGGCCGCCTTTTGCCTTC/ggG																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120512150	120512155	+	inframe_deletion	In_Frame_Del	DEL	GCACAT	GCACAT	-			P-0036701-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			266	53	567	0	ENST00000256646.2:c.1087_1092del	p.Met363_Cys364del	p.M363_C364del	ENST00000256646	NM_024408.3	363	ATGTGC/-																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041728	29041728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036701-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			251	371	732	0	ENST00000282397.4:c.91G>A	p.Asp31Asn	p.D31N	ENST00000282397	NM_002019.4	31	Gat/Aat																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46738475	46738475	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0036546-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			254	323	807	1	ENST00000371975.4:c.1375+1G>A		p.X459_splice	ENST00000371975	NM_003579.3	459																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71943960	71943961	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0036546-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			409	462	1171	35	ENST00000298229.2:c.1893_1894delCCinsAA	p.Leu632Ile	p.L632I	ENST00000298229	NM_001567.3	631	ctCCtc/ctAAtc																																																																															
PALB2	79728	MSKCC	GRCh37	16	23635348	23635348	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036546-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			397	233	1015	0	ENST00000261584.4:c.2816T>G	p.Leu939Trp	p.L939W	ENST00000261584	NM_024675.3	939	tTg/tGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0036546-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			563	80	991	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																															
UPF1	5976	MSKCC	GRCh37	19	18975016	18975016	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036546-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			501	76	737	0	ENST00000262803.5:c.2813G>T	p.Arg938Leu	p.R938L	ENST00000262803	NM_002911.3	938	cGg/cTg																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021475	31021476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036546-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			634	68	812	0	ENST00000375687.4:c.1474_1475insT	p.Ala492ValfsTer2	p.A492Vfs*2	ENST00000375687	NM_015338.5	492	gct/gTct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0036546-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			529	188	774	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
EIF4E	1977	MSKCC	GRCh37	4	99823124	99823124	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036546-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			263	156	584	0	ENST00000280892.6:c.88C>G	p.Pro30Ala	p.P30A	ENST00000280892	NM_001130678.1	30	Cct/Gct																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047985	180047985	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036546-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			668	88	1153	0	ENST00000261937.6:c.2190C>A	p.Asn730Lys	p.N730K	ENST00000261937	NM_182925.4	730	aaC/aaA																																																																															
ROS1	6098	MSKCC	GRCh37	6	117632271	117632271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036546-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			357	92	562	0	ENST00000368508.3:c.6145C>T	p.Pro2049Ser	p.P2049S	ENST00000368508	NM_002944.2	2049	Cct/Tct																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976842	2976842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036546-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			870	99	1184	0	ENST00000396946.4:c.1170G>T	p.Gln390His	p.Q390H	ENST00000396946	NM_032415.4	390	caG/caT																																																																															
PREX2	80243	MSKCC	GRCh37	8	68995592	68995592	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036546-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			769	94	960	0	ENST00000288368.4:c.1996C>G	p.Leu666Val	p.L666V	ENST00000288368	NM_024870.2	666	Cta/Gta																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035915-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			508	42	678	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533143	63533143	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035915-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			276	230	957	1	ENST00000307078.5:c.1751A>G	p.Lys584Arg	p.K584R	ENST00000307078	NM_004655.3	584	aAa/aGa																																																																															
SETD2	29072	MSKCC	GRCh37	3	47147575	47147575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035915-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			379	26	576	1	ENST00000409792.3:c.4751T>C	p.Leu1584Pro	p.L1584P	ENST00000409792	NM_014159.6	1584	cTc/cCc																																																																															
RAD50	10111	MSKCC	GRCh37	5	131924500	131924500	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035915-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			229	182	536	0	ENST00000265335.6:c.1173A>T	p.Arg391Ser	p.R391S	ENST00000265335		391	agA/agT																																																																															
FLT4	2324	MSKCC	GRCh37	5	180047965	180047965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035915-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			591	33	1093	1	ENST00000261937.6:c.2210G>A	p.Arg737His	p.R737H	ENST00000261937	NM_182925.4	737	cGc/cAc																																																																															
BRAF	673	MSKCC	GRCh37	7	140481397	140481398	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGT			P-0035915-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			420	30	585	0	ENST00000288602.6:c.1408_1410dup	p.Thr470dup	p.T470dup	ENST00000288602	NM_004333.4	470	-/ACA																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391898	139391898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035915-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			325	317	1111	1	ENST00000277541.6:c.6293G>A	p.Arg2098His	p.R2098H	ENST00000277541	NM_017617.3	2098	cGc/cAc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099982	157099987	+	inframe_deletion	In_Frame_Del	DEL	GGCGGC	GGCGGC	-			P-0033184-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			80	43	74	0	ENST00000346085.5:c.939_944delCGGCGG	p.Gly318_Gly319del	p.G318_G319del	ENST00000346085	NM_020732.3	307	GGCGGC/-																																																																															
MET	4233	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0033184-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			821	88	916	0	ENST00000397752.3:c.3028+2T>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																																
ARID2	196528	MSKCC	GRCh37	12	46245688	46245688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033184-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			338	36	375	0	ENST00000334344.6:c.3782G>A	p.Arg1261His	p.R1261H	ENST00000334344	NM_152641.2	1261	cGt/cAt																																																																															
NF1	4763	MSKCC	GRCh37	17	29554583	29554583	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033184-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			278	18	304	0	ENST00000358273.4:c.2368C>G	p.Leu790Val	p.L790V	ENST00000358273	NM_001042492.2	790	Cta/Gta																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618883	37618883	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033184-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			481	42	553	0	ENST00000447079.4:c.559G>T	p.Glu187Ter	p.E187*	ENST00000447079	NM_015083.1	187	Gaa/Taa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0033331-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			461	46	738	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821596	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs767179754		P-0033331-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			104	24	151	0	ENST00000268489.5:c.10579_10581del	p.Gly3527del	p.G3527del	ENST00000268489	NM_006885.3	3527	GGC/-																																																																															
TP53	7157	MSKCC	GRCh37	17	7577115	7577117	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0033331-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			517	69	1007	0	ENST00000269305.4:c.821_823del	p.Val274_Cys275delinsGly	p.V274_C275delinsG	ENST00000269305	NM_001126112.2	274	gTTTgt/ggt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539001	187539001	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033331-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			447	63	819	0	ENST00000441802.2:c.8739T>A	p.Asp2913Glu	p.D2913E	ENST00000441802	NM_005245.3	2913	gaT/gaA																																																																															
SPEN	23013	MSKCC	GRCh37	1	16260272	16260272	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			441	102	740	0	ENST00000375759.3:c.7537A>G	p.Thr2513Ala	p.T2513A	ENST00000375759	NM_015001.2	2513	Act/Gct																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092975	27092975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			382	37	582	0	ENST00000324856.7:c.2906G>T	p.Gly969Val	p.G969V	ENST00000324856	NM_006015.4	969	gGc/gTc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65323436	65323436	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			553	110	842	0	ENST00000342505.4:c.1361G>T	p.Arg454Leu	p.R454L	ENST00000342505	NM_002227.2	454	cGg/cTg																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78428511	78428511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			465	110	967	0	ENST00000370768.2:c.1288C>T	p.Arg430Cys	p.R430C	ENST00000370768	NM_003902.3	430	Cgt/Tgt																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120510720	120510722	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			723	116	1013	0	ENST00000256646.2:c.1242_1244del	p.Glu414del	p.E414del	ENST00000256646	NM_024408.3	414	gaAGAt/gat																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206666653	206666653	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			550	340	1026	0	ENST00000367120.3:c.1987G>T	p.Ala663Ser	p.A663S	ENST00000367120	NM_014002.3	663	Gcc/Tcc																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100634	8100634	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			589	183	1127	0	ENST00000346208.3:c.608G>T	p.Gly203Val	p.G203V	ENST00000346208		203	gGc/gTc																																																																															
TET1	80312	MSKCC	GRCh37	10	70450654	70450654	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			557	100	659	0	ENST00000373644.4:c.5494T>C	p.Ser1832Pro	p.S1832P	ENST00000373644	NM_030625.2	1832	Tcg/Ccg																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64136214	64136214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			695	43	1082	0	ENST00000334205.4:c.1373G>A	p.Arg458His	p.R458H	ENST00000334205	NM_003942.2	458	cGc/cAc																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948803	71948803	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778425524		P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			679	133	1162	1	ENST00000298229.2:c.3515G>A	p.Arg1172His	p.R1172H	ENST00000298229	NM_001567.3	1172	cGc/cAc																																																																															
PGR	5241	MSKCC	GRCh37	11	100996813	100996813	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			602	54	835	0	ENST00000325455.5:c.1714del	p.Asp572MetfsTer77	p.D572Mfs*77	ENST00000325455	NM_001202474.3	572	Gat/at																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118366450	118366450	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			448	129	593	0	ENST00000534358.1:c.5399C>G	p.Ser1800Ter	p.S1800*	ENST00000534358	NM_005933.3	1800	tCa/tGa																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230604	46230604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			510	42	846	0	ENST00000334344.6:c.853C>T	p.Arg285Trp	p.R285W	ENST00000334344	NM_152641.2	285	Cgg/Tgg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49442442	49442442	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			641	181	929	1	ENST00000301067.7:c.4131G>T	p.Gln1377His	p.Q1377H	ENST00000301067	NM_003482.3	1377	caG/caT																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49446069	49446069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			1099	64	1451	0	ENST00000301067.7:c.1397G>A	p.Arg466His	p.R466H	ENST00000301067	NM_003482.3	466	cGc/cAc																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856596	111856596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			138	12	194	2	ENST00000341259.2:c.647G>A	p.Arg216His	p.R216H	ENST00000341259	NM_005475.2	216	cGc/cAc																																																																															
POLE	5426	MSKCC	GRCh37	12	133241961	133241961	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			717	195	1076	0	ENST00000320574.5:c.2395G>T	p.Val799Leu	p.V799L	ENST00000320574	NM_006231.2	799	Gtg/Ttg																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589327	28589327	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			546	89	713	0	ENST00000241453.7:c.2720A>G	p.Lys907Arg	p.K907R	ENST00000241453	NM_004119.2	907	aAa/aGa																																																																															
FLT1	2321	MSKCC	GRCh37	13	28880835	28880836	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			652	250	963	2	ENST00000282397.4:c.3794_3795delinsAA	p.Pro1265Gln	p.P1265Q	ENST00000282397	NM_002019.4	1265	cCC/cAA																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906949	32906949	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			472	37	711	0	ENST00000380152.3:c.1334C>A	p.Ser445Tyr	p.S445Y	ENST00000380152		445	tCt/tAt																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912392	32912392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			330	48	598	0	ENST00000380152.3:c.3900G>A	p.Met1300Ile	p.M1300I	ENST00000380152		1300	atG/atA																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912400	32912400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			333	46	583	1	ENST00000380152.3:c.3908G>A	p.Gly1303Asp	p.G1303D	ENST00000380152		1303	gGc/gAc																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103518224	103518224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			384	24	411	0	ENST00000355739.4:c.2162C>T	p.Ala721Val	p.A721V	ENST00000355739	NM_000123.3	721	gCg/gTg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609386	81609386	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			357	99	735	0	ENST00000298171.2:c.984G>C	p.Glu328Asp	p.E328D	ENST00000298171	NM_000369.2	328	gaG/gaC																																																																															
MGA	23269	MSKCC	GRCh37	15	42000307	42000307	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			294	76	635	0	ENST00000219905.7:c.2326G>T	p.Gly776Ter	p.G776*	ENST00000219905	NM_001164273.1	776	Gga/Tga																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348920	11348920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			453	25	701	0	ENST00000332029.2:c.416G>A	p.Gly139Asp	p.G139D	ENST00000332029	NM_003745.1	139	gGc/gAc																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72822330	72822330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			889	49	1198	0	ENST00000268489.5:c.9845C>T	p.Ala3282Val	p.A3282V	ENST00000268489	NM_006885.3	3282	gCg/gTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			527	237	1143	0	ENST00000269305.4:c.379T>A	p.Ser127Thr	p.S127T	ENST00000269305	NM_001126112.2	127	Tcc/Acc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682338	37682338	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			582	132	951	0	ENST00000447079.4:c.3529G>C	p.Glu1177Gln	p.E1177Q	ENST00000447079	NM_015083.1	1177	Gag/Cag																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			303	21	419	2	ENST00000447079.4:c.4382delG	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40458323	40458323	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			280	79	304	1	ENST00000345506.4:c.1538T>A	p.Met513Lys	p.M513K	ENST00000345506	NM_003152.3	513	aTg/aAg																																																																															
MSI2	124540	MSKCC	GRCh37	17	55752345	55752345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			744	42	1102	1	ENST00000284073.2:c.803C>T	p.Ala268Val	p.A268V	ENST00000284073	NM_138962.2	268	gCg/gTg																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63553969	63553969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			645	82	801	0	ENST00000307078.5:c.770C>T	p.Ala257Val	p.A257V	ENST00000307078	NM_004655.3	257	gCc/gTc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78820321	78820321	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			685	171	1037	0	ENST00000306801.3:c.1261A>G	p.Thr421Ala	p.T421A	ENST00000306801	NM_020761.2	421	Acc/Gcc																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78867626	78867626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			988	70	1119	3	ENST00000306801.3:c.2362C>T	p.Arg788Cys	p.R788C	ENST00000306801	NM_020761.2	788	Cgc/Tgc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			564	29	761	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			447	115	903	3	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216637	2216637	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			479	253	1286	0	ENST00000398665.3:c.2281G>T	p.Glu761Ter	p.E761*	ENST00000398665	NM_032482.2	761	Gag/Tag																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602334	10602334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			515	207	1104	1	ENST00000171111.5:c.1244G>A	p.Arg415His	p.R415H	ENST00000171111	NM_203500.1	415	cGc/cAc																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141507	11141507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			439	160	1057	1	ENST00000344626.4:c.3484G>A	p.Gly1162Ser	p.G1162S	ENST00000344626	NM_003072.3	1162	Ggc/Agc																																																																															
POLD1	5424	MSKCC	GRCh37	19	50917074	50917074	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780138978		P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			615	137	1139	1	ENST00000440232.2:c.2326C>T	p.Arg776Trp	p.R776W	ENST00000440232	NM_002691.3	776	Cgg/Tgg																																																																															
TMEM127	55654	MSKCC	GRCh37	2	96920688	96920688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			452	80	632	1	ENST00000258439.3:c.292G>A	p.Ala98Thr	p.A98T	ENST00000258439	NM_001193304.2	98	Gcc/Acc																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872636	136872636	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			509	126	800	0	ENST00000241393.3:c.862G>T	p.Glu288Ter	p.E288*	ENST00000241393	NM_003467.2	288	Gag/Tag																																																																															
CASP8	841	MSKCC	GRCh37	2	202131291	202131291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			525	77	674	0	ENST00000358485.4:c.259G>A	p.Asp87Asn	p.D87N	ENST00000358485	NM_001080125.1	87	Gac/Aac																																																																															
BARD1	580	MSKCC	GRCh37	2	215645503	215645523	+	inframe_deletion	In_Frame_Del	DEL	TGGTGAAGAACATTCAGGCAA	TGGTGAAGAACATTCAGGCAA	-			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			465	378	1171	0	ENST00000260947.4:c.1075_1095delTTGCCTGAATGTTCTTCACCA	p.Leu359_Pro365del	p.L359_P365del	ENST00000260947	NM_000465.2	359	TTGCCTGAATGTTCTTCACCA/-																																																																															
PAK7	57144	MSKCC	GRCh37	20	9520180	9520180	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			668	146	732	0	ENST00000353224.5:c.2089C>A	p.His697Asn	p.H697N	ENST00000353224	NM_177990.2	697	Cat/Aat																																																																															
GNAS	2778	MSKCC	GRCh37	20	57478633	57478633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			653	105	786	2	ENST00000371085.3:c.305C>T	p.Ala102Val	p.A102V	ENST00000371085	NM_000516.4	102	gCg/gTg																																																																															
GNAS	2778	MSKCC	GRCh37	20	57480483	57480483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			489	84	489	3	ENST00000371085.3:c.478C>T	p.Arg160Cys	p.R160C	ENST00000371085	NM_000516.4	160	Cgt/Tgt																																																																															
MLH1	4292	MSKCC	GRCh37	3	37035105	37035105	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			322	91	676	0	ENST00000231790.2:c.67G>T	p.Glu23Ter	p.E23*	ENST00000231790	NM_000249.3	23	Gaa/Taa																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940370	49940370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			500	137	993	0	ENST00000296474.3:c.673G>A	p.Ala225Thr	p.A225T	ENST00000296474	NM_002447.2	225	Gcc/Acc																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1962801	1962803	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			576	59	733	0	ENST00000382891.5:c.3301_3303del	p.Glu1101del	p.E1101del	ENST00000382891	NM_133335.3	1099	GAG/-																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55140788	55140788	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			457	118	811	0	ENST00000257290.5:c.1649A>T	p.Lys550Ile	p.K550I	ENST00000257290	NM_006206.4	550	aAa/aTa																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155264	55155264	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			471	90	791	0	ENST00000257290.5:c.2863C>A	p.Pro955Thr	p.P955T	ENST00000257290	NM_006206.4	955	Cct/Act																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213830	66213830	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			371	74	765	0	ENST00000273854.3:c.2600T>A	p.Val867Glu	p.V867E	ENST00000273854	NM_004439.5	867	gTa/gAa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509116	66509116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			212	46	537	0	ENST00000273854.3:c.211G>T	p.Gly71Trp	p.G71W	ENST00000273854	NM_004439.5	71	Ggg/Tgg																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143003301	143003301	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			533	137	926	0	ENST00000262992.4:c.2525G>T	p.Cys842Phe	p.C842F	ENST00000262992	NM_001101669.1	842	tGt/tTt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187519227	187519227	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			521	77	708	0	ENST00000441802.2:c.12156C>A	p.Ser4052Arg	p.S4052R	ENST00000441802	NM_005245.3	4052	agC/agA																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526306	31526306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			1025	205	1278	0	ENST00000344624.3:c.734G>A	p.Arg245Gln	p.R245Q	ENST00000344624		245	cGg/cAg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79961034	79961034	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			539	112	901	0	ENST00000265081.6:c.431C>G	p.Ser144Cys	p.S144C	ENST00000265081	NM_002439.4	144	tCt/tGt																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056574	26056574	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			237	20	424	0	ENST00000343677.2:c.83C>A	p.Ala28Asp	p.A28D	ENST00000343677	NM_005319.3	28	gCt/gAt																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778019	27778020	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			390	24	706	0	ENST00000369163.2:c.170dup	p.Ser58ValfsTer17	p.S58Vfs*17	ENST00000369163	NM_003536.2	56	-/A																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803059	32803059	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			896	62	960	0	ENST00000374899.4:c.817C>T	p.Arg273Ter	p.R273*	ENST00000374899	NM_018833.2	273	Cga/Tga																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138198389	138198389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751123351		P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			533	41	582	0	ENST00000237289.4:c.982G>A	p.Ala328Thr	p.A328T	ENST00000237289	NM_001270507.1	328	Gca/Aca																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005534	150005534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			242	305	612	0	ENST00000253339.5:c.691G>A	p.Gly231Arg	p.G231R	ENST00000253339		231	Gga/Aga																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005540	150005540	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			362	167	601	0	ENST00000253339.5:c.685A>T	p.Ser229Cys	p.S229C	ENST00000253339		229	Agc/Tgc																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419890	152419890	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			513	99	866	0	ENST00000206249.3:c.1577A>G	p.Tyr526Cys	p.Y526C	ENST00000206249	NM_000125.3	526	tAc/tGc																																																																															
PARK2	5071	MSKCC	GRCh37	6	161969946	161969947	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			358	190	802	1	ENST00000366898.1:c.1022_1023delinsCT	p.Leu341Pro	p.L341P	ENST00000366898	NM_004562.2	341	cTG/cCT																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729248	41729248	+	stop_lost	Nonstop_Mutation	SNP	C	C	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			433	105	656	0	ENST00000242208.4:c.1281G>T	p.Ter427TyrextTer29	p.*427Yext*29	ENST00000242208	NM_002192.2	427	taG/taT																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729468	41729468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			534	116	975	0	ENST00000242208.4:c.1061G>T	p.Cys354Phe	p.C354F	ENST00000242208	NM_002192.2	354	tGc/tTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55229302	55229302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			500	131	776	0	ENST00000275493.2:c.1609G>T	p.Asp537Tyr	p.D537Y	ENST00000275493	NM_005228.3	537	Gac/Tac																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38282215	38282215	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			646	50	848	0	ENST00000425967.3:c.841C>T	p.Arg281Trp	p.R281W	ENST00000425967	NM_001174067.1	281	Cgg/Tgg																																																																															
PREX2	80243	MSKCC	GRCh37	8	68942832	68942832	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			634	151	905	1	ENST00000288368.4:c.644A>T	p.Lys215Met	p.K215M	ENST00000288368	NM_024870.2	215	aAg/aTg																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021854	69021854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			409	96	713	0	ENST00000288368.4:c.3142G>C	p.Asp1048His	p.D1048H	ENST00000288368	NM_024870.2	1048	Gat/Cat																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737401	145737401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			716	95	1114	1	ENST00000428558.2:c.3286C>T	p.Arg1096Cys	p.R1096C	ENST00000428558	NM_004260.3	1096	Cgc/Tgc																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740356	145740358	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			430	384	1228	0	ENST00000428558.2:c.1582_1584del	p.Leu528del	p.L528del	ENST00000428558	NM_004260.3	528	TTG/-																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740558	145740558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			607	158	1071	0	ENST00000428558.2:c.1459C>T	p.Arg487Cys	p.R487C	ENST00000428558	NM_004260.3	487	Cgt/Tgt																																																																															
JAK2	3717	MSKCC	GRCh37	9	5064948	5064948	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			276	71	725	0	ENST00000381652.3:c.1122A>T	p.Arg374Ser	p.R374S	ENST00000381652	NM_004972.3	374	agA/agT																																																																															
BCOR	54880	MSKCC	GRCh37	X	39913179	39913179	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035181-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			269	17	458	0	ENST00000378444.4:c.4936C>A	p.Leu1646Ile	p.L1646I	ENST00000378444	NM_001123385.1	1646	Ctc/Atc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0035182-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			489	57	819	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0035182-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			510	38	1041	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0035182-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			386	44	724	3	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539924	187539924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035182-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			244	213	736	0	ENST00000441802.2:c.7816G>A	p.Gly2606Arg	p.G2606R	ENST00000441802	NM_005245.3	2606	Ggg/Agg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499717	8499717	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs199632354		P-0035182-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			220	263	958	0	ENST00000356435.5:c.2252A>T	p.Tyr751Phe	p.Y751F	ENST00000356435		751	tAt/tTt																																																																															
LATS2	26524	MSKCC	GRCh37	13	21565434	21565434	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45453992		P-0035182-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			328	270	1140	0	ENST00000382592.4:c.452G>A	p.Arg151Gln	p.R151Q	ENST00000382592	NM_014572.2	151	cGg/cAg																																																																															
RECQL	5965	MSKCC	GRCh37	12	21639446	21639446	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035182-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			212	140	643	0	ENST00000421138.2:c.468T>G	p.Ile156Met	p.I156M	ENST00000421138		156	atT/atG																																																																															
POLE	5426	MSKCC	GRCh37	12	133214599	133214599	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs138748289		P-0035182-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			196	167	661	0	ENST00000320574.5:c.5678+1G>A		p.X1893_splice	ENST00000320574	NM_006231.2	1893																																																																																
NTRK3	4916	MSKCC	GRCh37	15	88476289	88476289	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035182-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			529	32	1014	0	ENST00000360948.2:c.1843A>G	p.Met615Val	p.M615V	ENST00000360948	NM_001012338.2	615	Atg/Gtg																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246287	41246287	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035182-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			568	41	984	0	ENST00000357654.3:c.1261G>T	p.Glu421Ter	p.E421*	ENST00000357654	NM_007294.3	421	Gaa/Taa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621190	1621190	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0035182-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			527	41	964	0	ENST00000344749.5:c.956G>C	p.Gly319Ala	p.G319A	ENST00000344749	NM_001136139.2	319	gGc/gCc																																																																															
APC	324	MSKCC	GRCh37	5	112177233	112177233	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035182-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			311	19	538	0	ENST00000257430.4:c.5942A>G	p.Asn1981Ser	p.N1981S	ENST00000257430	NM_000038.5	1981	aAt/aGt																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26046002	26046002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035182-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			269	19	529	1	ENST00000540144.1:c.364C>T	p.Pro122Ser	p.P122S	ENST00000540144	NM_003531.2	122	Ccc/Tcc																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056330	26056330	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035182-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			475	26	786	0	ENST00000343677.2:c.327G>C	p.Lys109Asn	p.K109N	ENST00000343677	NM_005319.3	109	aaG/aaC																																																																															
HGF	3082	MSKCC	GRCh37	7	81372734	81372734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035182-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			309	25	655	0	ENST00000222390.5:c.800C>A	p.Pro267Gln	p.P267Q	ENST00000222390	NM_000601.4	267	cCg/cAg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033992-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			544	36	815	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0033992-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			698	28	969	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578499	7578499	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033992-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			874	29	1231	0	ENST00000269305.4:c.431A>C	p.Gln144Pro	p.Q144P	ENST00000269305	NM_001126112.2	144	cAg/cCg																																																																															
TET1	80312	MSKCC	GRCh37	10	70404650	70404650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033731-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			294	279	755	1	ENST00000373644.4:c.2164G>A	p.Val722Met	p.V722M	ENST00000373644	NM_030625.2	722	Gtg/Atg																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274674	123274674	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033731-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			377	335	861	0	ENST00000358487.5:c.1244T>C	p.Val415Ala	p.V415A	ENST00000358487	NM_000141.4	415	gTg/gCg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71947008	71947008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033731-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			399	520	1130	0	ENST00000298229.2:c.2857C>T	p.Arg953Trp	p.R953W	ENST00000298229	NM_001567.3	953	Cgg/Tgg																																																																															
KRAS	3845	MSKCC	GRCh37	12	25368434	25368434	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033731-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			307	255	790	3	ENST00000256078.4:c.511del	p.Ile171SerfsTer11	p.I171Sfs*11	ENST00000256078	NM_033360.2	171	Atc/tc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914728	32914728	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033731-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			251	218	814	0	ENST00000380152.3:c.6236T>C	p.Val2079Ala	p.V2079A	ENST00000380152		2079	gTg/gCg																																																																															
CD276	80381	MSKCC	GRCh37	15	73995371	73995371	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033731-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			286	270	585	0	ENST00000318443.5:c.677T>C	p.Val226Ala	p.V226A	ENST00000318443	NM_001024736.1	226	gTg/gCg																																																																															
MSH3	4437	MSKCC	GRCh37	5	79950728	79950736	+	inframe_deletion	In_Frame_Del	DEL	CAGCGCCCC	CAGCGCCCC	-			P-0033731-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			119	31	281	0	ENST00000265081.6:c.195_203delGCCCCCAGC	p.Pro67_Pro69del	p.P67_P69del	ENST00000265081	NM_002439.4	61	gCAGCGCCCCca/gca																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519634	137519634	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033731-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			325	343	780	0	ENST00000367739.4:c.1004A>C	p.His335Pro	p.H335P	ENST00000367739	NM_000416.2	335	cAt/cCt																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099402	157099403	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAG			P-0033731-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			233	60	388	0	ENST00000346085.5:c.360_362dupGCA	p.Gln131dup	p.Q131dup	ENST00000346085	NM_020732.3	131	-/CAG																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1314931	1314931	+	downstream_gene_variant	3'Flank	SNP	C	C	G			P-0033731-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			384	314	709	0				ENST00000381566																																																																																		
BRCA2	675	MSKCC	GRCh37	13	32914592	32914592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033585-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			265	259	968	3	ENST00000380152.3:c.6100C>T	p.Arg2034Cys	p.R2034C	ENST00000380152		2034	Cgt/Tgt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033585-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			445	62	770	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425946	49425946	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033585-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			339	316	1227	0	ENST00000301067.7:c.12542C>G	p.Ser4181Cys	p.S4181C	ENST00000301067	NM_003482.3	4181	tCt/tGt																																																																															
PAK1	5058	MSKCC	GRCh37	11	77090411	77090411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032850-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			351	328	796	0	ENST00000356341.3:c.314G>A	p.Arg105His	p.R105H	ENST00000356341	NM_002576.4	105	cGc/cAc																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870778	12870778	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032850-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			172	14	214	0	ENST00000228872.4:c.5C>G	p.Ser2Ter	p.S2*	ENST00000228872	NM_004064.3	2	tCa/tGa																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43724519	43724519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032850-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			625	683	1621	0	ENST00000382044.4:c.3548G>A	p.Cys1183Tyr	p.C1183Y	ENST00000382044	NM_001141980.1	1183	tGt/tAt																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119715	17119715	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032850-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			333	328	847	1	ENST00000285071.4:c.1279C>A	p.Pro427Thr	p.P427T	ENST00000285071	NM_144997.5	427	Ccc/Acc																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618398	37618398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032850-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			437	27	597	1	ENST00000447079.4:c.74C>T	p.Ser25Leu	p.S25L	ENST00000447079	NM_015083.1	25	tCg/tTg																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211355	36211357	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0032850-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			609	494	1232	11	ENST00000222270.7:c.1117_1119delGAA	p.Glu373del	p.E373del	ENST00000222270	NM_014727.1	369	aAAGaa/aaa																																																																															
SOS1	6654	MSKCC	GRCh37	2	39283986	39283986	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032850-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			556	39	729	0	ENST00000402219.2:c.367G>C	p.Asp123His	p.D123H	ENST00000402219	NM_005633.3	123	Gac/Cac																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057594	180057594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032850-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			588	425	1404	1	ENST00000261937.6:c.361G>A	p.Glu121Lys	p.E121K	ENST00000261937	NM_182925.4	121	Gag/Aag																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527698	157527698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032850-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			414	390	943	2	ENST00000346085.5:c.5423G>A	p.Arg1808His	p.R1808H	ENST00000346085	NM_020732.3	1808	cGt/cAt																																																																															
MET	4233	MSKCC	GRCh37	7	116412040	116412060	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAAGGTATATTTCAGTTTATT	GAAGGTATATTTCAGTTTATT	-			P-0032850-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			1078	151	1394	0	ENST00000397752.3:c.3026_3028+18del		p.X1009_splice	ENST00000397752	NM_000245.2	1009																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0030421-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			632	49	1013	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0030550-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			390	153	597	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																															
ERG	2078	MSKCC	GRCh37	21	39817414	39817414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030550-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			305	288	612	0	ENST00000288319.7:c.149G>A	p.Arg50His	p.R50H	ENST00000288319	NM_182918.3	50	cGc/cAc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65321305	65321305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030550-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			322	313	754	1	ENST00000342505.4:c.1535C>T	p.Ser512Leu	p.S512L	ENST00000342505	NM_002227.2	512	tCg/tTg																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829121	72829121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030550-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			269	116	634	1	ENST00000268489.5:c.7460C>T	p.Ala2487Val	p.A2487V	ENST00000268489	NM_006885.3	2487	gCg/gTg																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118166572	118166572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030550-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			216	197	410	0	ENST00000369448.3:c.1082C>T	p.Pro361Leu	p.P361L	ENST00000369448	NM_017709.3	361	cCt/cTt																																																																															
RET	5979	MSKCC	GRCh37	10	43619183	43619183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030550-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			401	187	690	0	ENST00000355710.3:c.2866C>T	p.Pro956Ser	p.P956S	ENST00000355710	NM_020975.4	956	Cct/Tct																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852596	63852596	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030550-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			535	36	589	0	ENST00000279873.7:c.3374T>C	p.Val1125Ala	p.V1125A	ENST00000279873	NM_032199.2	1125	gTg/gCg																																																																															
TSHR	7253	MSKCC	GRCh37	14	81606200	81606200	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030550-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			248	192	545	0	ENST00000298171.2:c.870G>T	p.Lys290Asn	p.K290N	ENST00000298171	NM_000369.2	290	aaG/aaT																																																																															
AKT2	208	MSKCC	GRCh37	19	40741187	40741187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030550-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			384	334	887	1	ENST00000392038.2:c.1246G>A	p.Asp416Asn	p.D416N	ENST00000392038	NM_001626.4	416	Gac/Aac																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31394061	31394062	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0030550-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			225	262	571	0	ENST00000328111.2:c.2348_2349del	p.Gln783ArgfsTer21	p.Q783Rfs*21	ENST00000328111	NM_006892.3	783	cAG/c																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62322227	62322227	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030550-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			1219	86	876	0	ENST00000508582.2:c.2555G>T	p.Arg852Leu	p.R852L	ENST00000508582		852	cGg/cTg																																																																															
EP300	2033	MSKCC	GRCh37	22	41564865	41564865	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030550-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			486	27	651	0	ENST00000263253.7:c.4166A>G	p.Asn1389Ser	p.N1389S	ENST00000263253	NM_001429.3	1389	aAc/aGc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66270165	66270165	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030550-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			328	72	478	0	ENST00000273854.3:c.1717C>A	p.Pro573Thr	p.P573T	ENST00000273854	NM_004439.5	573	Cct/Act																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56161262	56161262	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030550-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			481	31	487	0	ENST00000399503.3:c.1131A>T	p.Arg377Ser	p.R377S	ENST00000399503	NM_005921.1	377	agA/agT																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419991	152419991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030550-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			513	69	706	1	ENST00000206249.3:c.1678G>A	p.Val560Met	p.V560M	ENST00000206249	NM_000125.3	560	Gtg/Atg																																																																															
TSC2	7249	MSKCC	GRCh37	16	2112989	2112989	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137854154		P-0030577-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			362	370	679	1	ENST00000219476.3:c.1378G>A	p.Ala460Thr	p.A460T	ENST00000219476	NM_000548.3	460	Gcc/Acc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0030577-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			598	63	711	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134982	2134984	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs1381384796		P-0030577-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			417	385	905	0	ENST00000219476.3:c.4527_4529del	p.Phe1510del	p.F1510del	ENST00000219476	NM_000548.3	1508	ccCTTc/ccc																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798457	32798457	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030577-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			533	459	962	0	ENST00000374899.4:c.1399delG	p.Val467LeufsTer2	p.V467Lfs*2	ENST00000374899	NM_018833.2	467	Gtt/tt																																																																															
MTOR	2475	MSKCC	GRCh37	1	11316210	11316210	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030577-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			646	64	657	0	ENST00000361445.4:c.544T>G	p.Phe182Val	p.F182V	ENST00000361445	NM_004958.3	182	Ttc/Gtc																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244041	5244041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030577-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			726	54	892	0	ENST00000357368.4:c.1441G>T	p.Asp481Tyr	p.D481Y	ENST00000357368	NM_002850.3	481	Gac/Tac																																																																															
XIAP	331	MSKCC	GRCh37	X	123020319	123020319	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030577-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			366	327	637	0	ENST00000355640.3:c.807C>G	p.Ile269Met	p.I269M	ENST00000355640		269	atC/atG																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0030643-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			695	241	1654	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509240	106509240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030643-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			973	73	1043	2	ENST00000359195.3:c.1234G>T	p.Val412Leu	p.V412L	ENST00000359195	NM_002649.2	412	Gtg/Ttg																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49439748	49439748	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030643-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			270	321	1086	0	ENST00000301067.7:c.4696C>T	p.Pro1566Ser	p.P1566S	ENST00000301067	NM_003482.3	1566	Cct/Tct																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926308	112926308	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030643-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			760	64	913	0	ENST00000351677.2:c.1441G>C	p.Glu481Gln	p.E481Q	ENST00000351677	NM_002834.3	481	Gag/Cag																																																																															
FLT3	2322	MSKCC	GRCh37	13	28597603	28597603	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030643-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			684	77	996	0	ENST00000241453.7:c.2302T>G	p.Tyr768Asp	p.Y768D	ENST00000241453	NM_004119.2	768	Tat/Gat																																																																															
FLT3	2322	MSKCC	GRCh37	13	28597612	28597612	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0030643-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			599	64	912	0	ENST00000241453.7:c.2293G>T	p.Glu765Ter	p.E765*	ENST00000241453	NM_004119.2	765	Gaa/Taa																																																																															
BLM	641	MSKCC	GRCh37	15	91312812	91312812	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030643-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			590	58	791	0	ENST00000355112.3:c.2551C>G	p.Gln851Glu	p.Q851E	ENST00000355112	NM_000057.2	851	Cag/Gag																																																																															
SOS1	6654	MSKCC	GRCh37	2	39214631	39214631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030643-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			867	101	981	2	ENST00000402219.2:c.3493G>A	p.Glu1165Lys	p.E1165K	ENST00000402219	NM_005633.3	1165	Gaa/Aaa																																																																															
TOP1	7150	MSKCC	GRCh37	20	39726966	39726966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030643-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			436	42	598	1	ENST00000361337.2:c.964G>A	p.Glu322Lys	p.E322K	ENST00000361337	NM_003286.2	322	Gaa/Aaa																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442497	52442497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030643-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			457	55	921	1	ENST00000460680.1:c.248C>T	p.Ala83Val	p.A83V	ENST00000460680	NM_004656.3	83	gCc/gTc																																																																															
EGFR	1956	MSKCC	GRCh37	7	55233067	55233067	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030643-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			517	148	1000	0	ENST00000275493.2:c.1817T>C	p.Leu606Pro	p.L606P	ENST00000275493	NM_005228.3	606	cTg/cCg																																																																															
ABL1	25	MSKCC	GRCh37	9	133760537	133760537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030643-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			322	317	1293	1	ENST00000318560.5:c.2860G>A	p.Gly954Ser	p.G954S	ENST00000318560	NM_005157.4	954	Ggc/Agc																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720805	89720808	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0031742-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			147	129	523	0	ENST00000371953.3:c.956_959delCTTT	p.Thr319LysfsTer24	p.T319Kfs*24	ENST00000371953	NM_000314.4	319	aCTTTa/aa																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0031742-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			524	116	1248	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																															
MAX	4149	MSKCC	GRCh37	14	65543382	65543382	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0031742-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			576	126	917	0	ENST00000358664.4:c.296-1G>T		p.X99_splice	ENST00000358664	NM_002382.4	99																																																																																
BRCA1	672	MSKCC	GRCh37	17	41243835	41243835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031742-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			331	311	1192	0	ENST00000357654.3:c.3713C>T	p.Pro1238Leu	p.P1238L	ENST00000357654	NM_007294.3	1238	cCt/cTt																																																																															
RAF1	5894	MSKCC	GRCh37	3	12645691	12645691	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031742-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			355	87	745	0	ENST00000251849.4:c.778A>C	p.Thr260Pro	p.T260P	ENST00000251849	NM_002880.3	260	Aca/Cca																																																																															
MAX	4149	MSKCC	GRCh37	14	65544656	65544656	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031742-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			548	366	1211	0	ENST00000358664.4:c.270del	p.Gln91ArgfsTer79	p.Q91Rfs*79	ENST00000358664	NM_002382.4	90	cgG/cg																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40681813	40681813	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0031742-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			364	130	784	0	ENST00000249776.8:c.591+1G>T		p.X197_splice	ENST00000249776	NM_033286.3	197																																																																																
MGA	23269	MSKCC	GRCh37	15	42041320	42041320	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031742-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			527	139	1100	0	ENST00000219905.7:c.5515G>T	p.Gly1839Ter	p.G1839*	ENST00000219905	NM_001164273.1	1839	Gga/Tga																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538319	9538319	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031742-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			338	322	1138	0	ENST00000353224.5:c.1679A>C	p.His560Pro	p.H560P	ENST00000353224	NM_177990.2	560	cAt/cCt																																																																															
KDR	3791	MSKCC	GRCh37	4	55973942	55973942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031742-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			483	161	1244	0	ENST00000263923.4:c.1374G>T	p.Trp458Cys	p.W458C	ENST00000263923	NM_002253.2	458	tgG/tgT																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755517	57755517	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0031742-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			177	212	742	0	ENST00000274289.3:c.270G>C	p.Lys90Asn	p.K90N	ENST00000274289	NM_006622.3	90	aaG/aaC																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040676	47040676	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031742-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			198	169	1197	0	ENST00000329236.7:c.1077C>G	p.Tyr359Ter	p.Y359*	ENST00000329236	NM_001204466.1	359	taC/taG																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72400890	72400890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030171-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			283	242	837	0	ENST00000357731.5:c.281C>T	p.Ser94Leu	p.S94L	ENST00000357731	NM_173808.2	94	tCa/tTa																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18715785	18715785	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030171-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			529	28	718	0	ENST00000266497.5:c.3616G>C	p.Glu1206Gln	p.E1206Q	ENST00000266497		1206	Gaa/Caa																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427542	49427542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030171-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			719	55	1064	0	ENST00000301067.7:c.10946G>A	p.Gly3649Asp	p.G3649D	ENST00000301067	NM_003482.3	3649	gGt/gAt																																																																															
CD276	80381	MSKCC	GRCh37	15	73996796	73996796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030171-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			245	229	702	0	ENST00000318443.5:c.1352G>A	p.Gly451Asp	p.G451D	ENST00000318443	NM_001024736.1	451	gGc/gAc																																																																															
NF1	4763	MSKCC	GRCh37	17	29585486	29585486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030171-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			234	236	763	0	ENST00000358273.4:c.4298C>T	p.Pro1433Leu	p.P1433L	ENST00000358273	NM_001042492.2	1433	cCt/cTt																																																																															
MALT1	10892	MSKCC	GRCh37	18	56367712	56367712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030171-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			440	114	737	0	ENST00000348428.3:c.538G>A	p.Val180Met	p.V180M	ENST00000348428	NM_006785.3	180	Gtg/Atg																																																																															
CENPA	1058	MSKCC	GRCh37	2	27015011	27015011	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030171-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			473	67	912	0	ENST00000335756.4:c.113A>G	p.His38Arg	p.H38R	ENST00000335756	NM_001809.3	38	cAt/cGt																																																																															
MET	4233	MSKCC	GRCh37	7	116397540	116397540	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030171-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			442	305	1126	1	ENST00000397752.3:c.1912A>T	p.Ile638Leu	p.I638L	ENST00000397752	NM_000245.2	638	Ata/Tta																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156731	20156732	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0030171-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			483	121	788	1	ENST00000379607.5:c.25_26delinsTT	p.Gly9Phe	p.G9F	ENST00000379607	NM_001412.3	9	GGt/TTt																																																																															
AR	367	MSKCC	GRCh37	X	66766452	66766453	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0030171-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			466	31	691	2	ENST00000374690.3:c.1464_1465delinsTT	p.Gln488_Gly489delinsHisTrp	p.Q488_G489delinsHW	ENST00000374690	NM_000044.3	488	caGGgg/caTTgg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0030153-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			578	163	1070	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0030153-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			608	17	916	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241677	55241677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030153-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			663	180	1244	0	ENST00000275493.2:c.2125G>A	p.Glu709Lys	p.E709K	ENST00000275493	NM_005228.3	709	Gaa/Aaa																																																																															
RET	5979	MSKCC	GRCh37	10	43604578	43604578	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030153-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			356	308	1218	0	ENST00000355710.3:c.1163T>C	p.Val388Ala	p.V388A	ENST00000355710	NM_020975.4	388	gTc/gCc																																																																															
NF1	4763	MSKCC	GRCh37	17	29586074	29586074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030153-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			334	93	834	0	ENST00000358273.4:c.4357G>A	p.Val1453Ile	p.V1453I	ENST00000358273	NM_001042492.2	1453	Gtt/Att																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251866	212251866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030153-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			251	65	513	0	ENST00000342788.4:c.3193G>A	p.Val1065Ile	p.V1065I	ENST00000342788	NM_005235.2	1065	Gta/Ata																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730831	40730831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030153-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			411	422	1324	1	ENST00000373198.4:c.3704G>T	p.Arg1235Leu	p.R1235L	ENST00000373198	NM_133170.3	1235	cGc/cTc																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542695	187542695	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030153-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			275	157	818	0	ENST00000441802.2:c.5045T>C	p.Ile1682Thr	p.I1682T	ENST00000441802	NM_005245.3	1682	aTt/aCt																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874320	151874320	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030153-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			268	303	851	1	ENST00000262189.6:c.8218A>G	p.Thr2740Ala	p.T2740A	ENST00000262189	NM_170606.2	2740	Act/Gct																																																																															
PREX2	80243	MSKCC	GRCh37	8	68939535	68939535	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030153-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			168	213	794	0	ENST00000288368.4:c.520T>C	p.Cys174Arg	p.C174R	ENST00000288368	NM_024870.2	174	Tgc/Cgc																																																																															
MED12	9968	MSKCC	GRCh37	X	70355020	70355020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030153-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			257	172	1158	0	ENST00000374080.3:c.4942G>T	p.Val1648Phe	p.V1648F	ENST00000374080		1648	Gtc/Ttc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0030155-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			559	17	843	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
TET2	54790	MSKCC	GRCh37	4	106157494	106157494	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030155-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			243	245	702	0	ENST00000380013.4:c.2395A>G	p.Thr799Ala	p.T799A	ENST00000380013	NM_001127208.2	799	Act/Gct																																																																															
FLT4	2324	MSKCC	GRCh37	5	180036005	180036005	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030155-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			495	453	1240	0	ENST00000261937.6:c.3856C>G	p.Gln1286Glu	p.Q1286E	ENST00000261937	NM_182925.4	1286	Cag/Gag																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417323	139417323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030155-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			454	459	1187	1	ENST00000277541.6:c.721C>T	p.His241Tyr	p.H241Y	ENST00000277541	NM_017617.3	241	Cac/Tac																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44732825	44732826	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCGCCGCCGCTG			P-0028688-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			368	181	829	0	ENST00000377967.4:c.40_51dupGCCGCCGCCGCT	p.Ala14_Ala17dup	p.A14_A17dup	ENST00000377967	NM_021140.2	14	acc/aCCGCCGCCGCTGcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0028688-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			320	722	1161	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098954	178098954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028688-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			314	152	449	0	ENST00000397062.3:c.91G>A	p.Gly31Arg	p.G31R	ENST00000397062	NM_006164.4	31	Gga/Aga																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94180525	94180525	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028688-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			288	297	679	0	ENST00000323929.3:c.1643T>C	p.Ile548Thr	p.I548T	ENST00000323929	NM_005591.3	548	aTa/aCa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0028688-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			317	425	1412	0	ENST00000304494.5:c.457+1G>T		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																																
YAP1	10413	MSKCC	GRCh37	11	101981627	101981627	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028688-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			261	119	402	0	ENST00000282441.5:c.48A>C	p.Gln16His	p.Q16H	ENST00000282441	NM_001130145.2	16	caA/caC																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964148	28964148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028688-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			176	551	718	0	ENST00000282397.4:c.1754G>A	p.Arg585Lys	p.R585K	ENST00000282397	NM_002019.4	585	aGa/aAa																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911629	32911629	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028688-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			778	79	664	0	ENST00000380152.3:c.3137A>G	p.Glu1046Gly	p.E1046G	ENST00000380152		1046	gAa/gGa																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061351	38061351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028688-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			306	391	1105	1	ENST00000250448.2:c.638G>A	p.Arg213His	p.R213H	ENST00000250448	NM_004496.3	213	cGc/cAc																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66782048	66782069	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTTTAAGCTTAATAAAAAACC	CCTTTAAGCTTAATAAAAAACC	-			P-0028688-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			349	160	544	0	ENST00000307102.5:c.1023-6_1038del		p.X341_splice	ENST00000307102	NM_002755.3	341																																																																																
INSR	3643	MSKCC	GRCh37	19	7128887	7128887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028688-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			781	313	1029	0	ENST00000302850.5:c.2921G>A	p.Ser974Asn	p.S974N	ENST00000302850	NM_000208.2	974	aGt/aAt																																																																															
MSH2	4436	MSKCC	GRCh37	2	47690178	47690178	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028688-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			398	242	764	0	ENST00000233146.2:c.1395C>A	p.Asn465Lys	p.N465K	ENST00000233146	NM_000251.2	465	aaC/aaA																																																																															
KDR	3791	MSKCC	GRCh37	4	55953814	55953814	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028688-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			548	291	853	1	ENST00000263923.4:c.3622T>A	p.Cys1208Ser	p.C1208S	ENST00000263923	NM_002253.2	1208	Tgt/Agt																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32189061	32189061	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028688-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			423	143	901	0	ENST00000375023.3:c.493T>C	p.Cys165Arg	p.C165R	ENST00000375023	NM_004557.3	165	Tgt/Cgt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578502	7578502	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			584	395	1337	0	ENST00000269305.4:c.428T>C	p.Val143Ala	p.V143A	ENST00000269305	NM_001126112.2	143	gTg/gCg																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32168637	32168637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			621	193	1079	0	ENST00000375023.3:c.4286del	p.Leu1429ArgfsTer29	p.L1429Rfs*29	ENST00000375023	NM_004557.3	1429	cTg/cg																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2213956	2213956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			448	217	1014	3	ENST00000398665.3:c.1768C>T	p.Arg590Cys	p.R590C	ENST00000398665	NM_032482.2	590	Cgc/Tgc																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40827892	40827892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			532	74	851	0	ENST00000373198.4:c.2536G>A	p.Val846Ile	p.V846I	ENST00000373198	NM_133170.3	846	Gtc/Atc																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			794	132	1190	0	ENST00000304494.5:c.457G>T	p.Asp153Tyr	p.D153Y	ENST00000304494	NM_000077.4	153	Gac/Tac																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845970	156845970	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			992	114	1004	0	ENST00000524377.1:c.1600C>A	p.Pro534Thr	p.P534T	ENST00000524377	NM_002529.3	534	Cct/Act																																																																															
TET1	80312	MSKCC	GRCh37	10	70432756	70432756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			503	219	918	0	ENST00000373644.4:c.4778G>A	p.Ser1593Asn	p.S1593N	ENST00000373644	NM_030625.2	1593	aGc/aAc																																																																															
PGR	5241	MSKCC	GRCh37	11	100962505	100962506	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			626	75	766	2	ENST00000325455.5:c.1891_1892delinsCT	p.Gly631Leu	p.G631L	ENST00000325455	NM_001202474.3	631	GGc/CTc																																																																															
ATM	472	MSKCC	GRCh37	11	108224575	108224575	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			350	105	610	2	ENST00000278616.4:c.8754G>T	p.Met2918Ile	p.M2918I	ENST00000278616	NM_000051.3	2918	atG/atT																																																																															
ARID2	196528	MSKCC	GRCh37	12	46123711	46123711	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			379	60	535	0	ENST00000334344.6:c.92G>T	p.Gly31Val	p.G31V	ENST00000334344	NM_152641.2	31	gGg/gTg																																																																															
FLT1	2321	MSKCC	GRCh37	13	28964188	28964188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			366	22	637	0	ENST00000282397.4:c.1714G>A	p.Asp572Asn	p.D572N	ENST00000282397	NM_002019.4	572	Gac/Aac																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88576240	88576240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			456	60	765	0	ENST00000360948.2:c.1433C>A	p.Ala478Asp	p.A478D	ENST00000360948	NM_001012338.2	478	gCc/gAc																																																																															
TSC2	7249	MSKCC	GRCh37	16	2126576	2126576	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			512	181	915	1	ENST00000219476.3:c.2827A>G	p.Arg943Gly	p.R943G	ENST00000219476	NM_000548.3	943	Aga/Gga																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72831181	72831181	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			504	162	852	0	ENST00000268489.5:c.5400C>G	p.Phe1800Leu	p.F1800L	ENST00000268489	NM_006885.3	1800	ttC/ttG																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216125	7216125	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			501	72	674	0	ENST00000380728.2:c.934C>G	p.Arg312Gly	p.R312G	ENST00000380728		312	Cgg/Ggg																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12032604	12032604	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			389	213	764	0	ENST00000353533.5:c.1040G>T	p.Cys347Phe	p.C347F	ENST00000353533	NM_003010.3	347	tGc/tTc																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39613850	39613850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			434	86	788	2	ENST00000262039.4:c.1768C>T	p.Leu590Phe	p.L590F	ENST00000262039	NM_002647.2	590	Ctt/Ttt																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602771	10602772	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			581	337	1229	1	ENST00000171111.5:c.806_807delinsTT	p.Arg269Leu	p.R269L	ENST00000171111	NM_203500.1	269	cGG/cTT																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25469976	25469977	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			459	368	995	2	ENST00000264709.3:c.1065_1066delinsTT	p.Gln356Ter	p.Q356*	ENST00000264709	NM_175629.2	355	caCCag/caTTag																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66230884	66230884	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			427	26	635	2	ENST00000273854.3:c.2087T>C	p.Leu696Pro	p.L696P	ENST00000273854	NM_004439.5	696	cTa/cCa																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66231727	66231727	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			428	44	777	0	ENST00000273854.3:c.1973A>T	p.Asp658Val	p.D658V	ENST00000273854	NM_004439.5	658	gAt/gTt																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111538	56111538	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			85	18	131	0	ENST00000399503.3:c.138G>T	p.Glu46Asp	p.E46D	ENST00000399503	NM_005921.1	46	gaG/gaT																																																																															
NSD1	64324	MSKCC	GRCh37	5	176637129	176637129	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			571	109	825	1	ENST00000439151.2:c.1729A>T	p.Thr577Ser	p.T577S	ENST00000439151	NM_022455.4	577	Act/Tct																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38196101	38196101	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			705	245	1052	0	ENST00000317025.8:c.700G>T	p.Val234Leu	p.V234L	ENST00000317025	NM_023034.1	234	Gta/Tta																																																																															
PREX2	80243	MSKCC	GRCh37	8	69031690	69031690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			541	94	835	0	ENST00000288368.4:c.3445C>A	p.Arg1149Ser	p.R1149S	ENST00000288368	NM_024870.2	1149	Cgc/Agc																																																																															
JAK2	3717	MSKCC	GRCh37	9	5077503	5077503	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			481	40	622	0	ENST00000381652.3:c.1915A>C	p.Lys639Gln	p.K639Q	ENST00000381652	NM_004972.3	639	Aaa/Caa																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460532	8460532	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			416	297	814	0	ENST00000356435.5:c.3754T>G	p.Ser1252Ala	p.S1252A	ENST00000356435		1252	Tca/Gca																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460534	8460534	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			417	297	807	0	ENST00000356435.5:c.3752T>G	p.Val1251Gly	p.V1251G	ENST00000356435		1251	gTg/gGg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8507429	8507429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			309	77	429	0	ENST00000356435.5:c.1549G>A	p.Gly517Arg	p.G517R	ENST00000356435		517	Ggg/Agg																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8521403	8521403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			604	253	960	0	ENST00000356435.5:c.835G>A	p.Glu279Lys	p.E279K	ENST00000356435		279	Gaa/Aaa																																																																															
FANCC	2176	MSKCC	GRCh37	9	98003010	98003011	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			181	252	553	0	ENST00000289081.3:c.265dup	p.Ile89AsnfsTer11	p.I89Nfs*11	ENST00000289081	NM_000136.2	89	att/aAtt																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98215770	98215770	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			370	235	768	0	ENST00000331920.6:c.3439T>C	p.Phe1147Leu	p.F1147L	ENST00000331920	NM_000264.3	1147	Ttc/Ctc																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300921	137300921	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			773	117	1103	0	ENST00000481739.1:c.566A>G	p.Tyr189Cys	p.Y189C	ENST00000481739	NM_002957.4	189	tAc/tGc																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324665	31324665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			283	124	329	0	ENST00000412585.2:c.143C>T	p.Ser48Leu	p.S48L	ENST00000412585	NM_005514.6	48	tCa/tTa																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971189	+	stop_gained	Nonsense_Mutation	ONP	GGGC	GGGC	ATGA			P-0029687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			288	239	764	1	ENST00000304494.5:c.169_172delinsTCAT	p.Ala57_Arg58delinsSerTer	p.A57_R58delinsS*	ENST00000304494	NM_000077.4	57	GCCCga/TCATga																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0000093-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			424	742	536	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720833	89720836	+	frameshift_variant	Frame_Shift_Del	DEL	AAAT	AAAT	-			P-0000093-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			209	178	175	0	ENST00000371953.3:c.987_990delTAAA	p.Asn329LysfsTer14	p.N329Kfs*14	ENST00000371953	NM_000314.4	328	gcAAAT/gc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0000422-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			224	119	202	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032131	26032131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000422-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			211	110	105	0	ENST00000244661.2:c.158G>T	p.Arg53Leu	p.R53L	ENST00000244661	NM_003537.3	53	cGc/cTc																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288615	33288615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000422-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			251	54	125	0	ENST00000374542.5:c.937G>T	p.Ala313Ser	p.A313S	ENST00000374542	NM_001141970.1	313	Gct/Tct																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692892	89692892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000422-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			96	31	141	0	ENST00000371953.3:c.376G>T	p.Ala126Ser	p.A126S	ENST00000371953	NM_000314.4	126	Gct/Tct																																																																															
RNF43	54894	MSKCC	GRCh37	17	56439937	56439937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000422-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			321	62	161	0	ENST00000407977.2:c.655C>T	p.Arg219Cys	p.R219C	ENST00000407977		219	Cgc/Tgc																																																																															
CDH1	999	MSKCC	GRCh37	16	68867232	68867233	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0000422-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			184	171	212	0	ENST00000261769.5:c.2480_2481delAT	p.Tyr827Ter	p.Y827*	ENST00000261769	NM_004360.3	827	TAt/t																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0029558-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			955	166	1141	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0029558-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			1040	169	1128	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25457242	25457242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147001633		P-0029558-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			1161	64	1065	2	ENST00000264709.3:c.2645G>A	p.Arg882His	p.R882H	ENST00000264709	NM_175629.2	882	cGc/cAc																																																																															
AXIN1	8312	MSKCC	GRCh37	16	347904	347904	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029558-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			1563	209	1658	1	ENST00000262320.3:c.1602C>A	p.His534Gln	p.H534Q	ENST00000262320	NM_003502.3	534	caC/caA																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118362015	118362015	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029558-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			470	28	695	0	ENST00000534358.1:c.4802del	p.Asn1601IlefsTer25	p.N1601Ifs*25	ENST00000534358	NM_005933.3	1601	Aat/at																																																																															
PALB2	79728	MSKCC	GRCh37	16	23614990	23614990	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0029558-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			543	184	636	1	ENST00000261584.4:c.3351G>T	p.Arg1117Ser	p.R1117S	ENST00000261584	NM_024675.3	1117	agG/agT																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149375024	149375024	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029558-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			776	700	1581	1	ENST00000360632.3:c.70C>G	p.Leu24Val	p.L24V	ENST00000360632	NM_015472.4	24	Cta/Gta																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145738079	145738079	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029558-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			1322	90	1428	0	ENST00000428558.2:c.2831A>G	p.His944Arg	p.H944R	ENST00000428558	NM_004260.3	944	cAt/cGt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027607-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			554	307	441	26	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0027607-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			818	326	745	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																															
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0027607-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			653	172	500	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097630	27097630	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027607-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			912	260	626	20	ENST00000324856.7:c.3219G>A	p.Trp1073Ter	p.W1073*	ENST00000324856	NM_006015.4	1073	tgG/tgA																																																																															
HGF	3082	MSKCC	GRCh37	7	81374346	81374346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027607-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			652	156	473	16	ENST00000222390.5:c.716C>T	p.Thr239Ile	p.T239I	ENST00000222390	NM_000601.4	239	aCa/aTa																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690805	89690823	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GTGCTGAAAGACATTATGA	GTGCTGAAAGACATTATGA	-			P-0027607-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			357	78	403	10	ENST00000371953.3:c.212_230del	p.Cys71SerfsTer22	p.C71Sfs*22	ENST00000371953	NM_000314.4	71	tGTGCTGAAAGACATTATGAc/tc																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554534	63554562	+	protein_altering_variant	In_Frame_Del	DEL	CCCGCCCCTCCGGCTCCCCCAACCCATCT	CCCGCCCCTCCGGCTCCCCCAACCCATCT	GGTTGGGGGAGCCGGAGGGGCGGGCA			P-0027607-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			857	96	615	8	ENST00000307078.5:c.177_205delinsTGCCCGCCCCTCCGGCTCCCCCAACC	p.Glu59_Ala69delinsAspAlaArgProSerGlySerProAsnPro	p.E59_A69delinsDARPSGSPNP	ENST00000307078	NM_004655.3	59	gaAGATGGGTTGGGGGAGCCGGAGGGGCGGGca/gaTGCCCGCCCCTCCGGCTCCCCCAACCca																																																																															
APC	324	MSKCC	GRCh37	5	112162945	112162945	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs1114167599		P-0027607-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			460	77	343	1	ENST00000257430.4:c.1548+1G>T		p.X516_splice	ENST00000257430	NM_000038.5	516																																																																																
MED12	9968	MSKCC	GRCh37	X	70338638	70338638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027607-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			1074	495	662	2	ENST00000374080.3:c.34C>T	p.Arg12Trp	p.R12W	ENST00000374080		12	Cgg/Tgg																																																																															
MLH1	4292	MSKCC	GRCh37	3	37092019	37092019	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			451	376	1037	1	ENST00000231790.2:c.2146G>A	p.Val716Met	p.V716M	ENST00000231790	NM_000249.3	716	Gtg/Atg																																																																															
SPEN	23013	MSKCC	GRCh37	1	16254623	16254623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			475	440	1096	0	ENST00000375759.3:c.1888C>T	p.Arg630Cys	p.R630C	ENST00000375759	NM_015001.2	630	Cgt/Tgt																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211375	36211377	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs199534880		P-0027687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			816	797	1612	0	ENST00000222270.7:c.1126_1128del	p.Lys376del	p.K376del	ENST00000222270	NM_014727.1	376	AAG/-																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597343	10597345	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-			P-0027687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			711	570	1437	0	ENST00000171111.5:c.1858_1860del	p.Gln620del	p.Q620del	ENST00000171111	NM_203500.1	620	CAG/-																																																																															
MYCL1	4610	MSKCC	GRCh37	1	40367100	40367100	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			853	814	1176	0	ENST00000397332.2:c.97T>A	p.Tyr33Asn	p.Y33N	ENST00000397332	NM_001033082.2	33	Tac/Aac																																																																															
ATR	545	MSKCC	GRCh37	3	142278203	142278203	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027687-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			238	220	1225	1	ENST00000350721.4:c.1622C>A	p.Thr541Lys	p.T541K	ENST00000350721	NM_001184.3	541	aCa/aAa																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026308	48026308	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027631-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			282	249	793	0	ENST00000234420.5:c.1186C>G	p.Leu396Val	p.L396V	ENST00000234420	NM_000179.2	396	Ctc/Gtc																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099409	157099426	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAA	CAGCAGCAGCAGCAGCAA	-			P-0027631-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			222	97	473	0	ENST00000346085.5:c.363_380del	p.Gln126_Gln131del	p.Q126_Q131del	ENST00000346085	NM_020732.3	116	CAGCAGCAGCAGCAGCAA/-																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991356	72991356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027631-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			423	385	1203	1	ENST00000268489.5:c.2689G>A	p.Gly897Arg	p.G897R	ENST00000268489	NM_006885.3	897	Ggg/Agg																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355849	73355849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027631-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			254	289	857	1	ENST00000377767.4:c.122G>A	p.Gly41Glu	p.G41E	ENST00000377767	NM_014953.3	41	gGg/gAg																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463601	25463601	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0027631-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			627	37	998	1	ENST00000264709.3:c.2083-2A>G		p.X695_splice	ENST00000264709	NM_175629.2	695																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49445201	49445202	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0027631-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			435	355	1385	4	ENST00000301067.7:c.2264_2265delinsTT	p.Arg755Leu	p.R755L	ENST00000301067	NM_003482.3	755	cGG/cTT																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246749	41246750	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0026755-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			288	408	625	0	ENST00000357654.3:c.798_799del	p.Ser267LysfsTer19	p.S267Kfs*19	ENST00000357654	NM_007294.3	266	gtTTca/gtca																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437579	56437579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026755-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			576	343	903	0	ENST00000407977.2:c.883C>T	p.His295Tyr	p.H295Y	ENST00000407977		295	Cat/Tat																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14629128	14629128	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026755-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			554	237	602	0	ENST00000254322.2:c.34G>C	p.Ala12Pro	p.A12P	ENST00000254322	NM_006145.1	12	Gcc/Ccc																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221334	36221334	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026755-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			1078	395	1058	0	ENST00000222270.7:c.5168T>A	p.Leu1723His	p.L1723H	ENST00000222270	NM_014727.1	1723	cTt/cAt																																																																															
ERF	2077	MSKCC	GRCh37	19	42753009	42753009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026755-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			746	112	819	2	ENST00000222329.4:c.1255C>T	p.Pro419Ser	p.P419S	ENST00000222329	NM_006494.2	419	Ccg/Tcg																																																																															
RICTOR	253260	MSKCC	GRCh37	5	39002661	39002661	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0026755-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			719	73	617	1	ENST00000357387.3:c.368T>A	p.Leu123Ter	p.L123*	ENST00000357387	NM_152756.3	123	tTg/tAg																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652103	36652103	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026755-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			532	482	930	1	ENST00000244741.5:c.225G>T	p.Lys75Asn	p.K75N	ENST00000244741	NM_000389.4	75	aaG/aaT																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15841230	15841231	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGCCGGAGCCGGAGCCGG			P-0026755-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			293	60	370	0	ENST00000307771.7:c.1326_1343dup	p.Ser443_Arg448dup	p.S443_R448dup	ENST00000307771	NM_005089.3	443	-/AGCCGGAGCCGGAGCCGG																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015554-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			873	138	759	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249909	110249959	+	inframe_deletion	In_Frame_Del	DEL	CAGGGCTGCCTTTGCTGACGCTGATGACCGACGGGCTGCCGTACTCGCTGC	CAGGGCTGCCTTTGCTGACGCTGATGACCGACGGGCTGCCGTACTCGCTGC	-			P-0015554-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			466	315	560	0	ENST00000374672.4:c.716_766delGCAGCGAGTACGGCAGCCCGTCGGTCATCAGCGTCAGCAAAGGCAGCCCTG	p.Gly239_Pro255del	p.G239_P255del	ENST00000374672	NM_004235.4	239	gGCAGCGAGTACGGCAGCCCGTCGGTCATCAGCGTCAGCAAAGGCAGCCCTGac/gac																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041382	47041382	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015554-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			1232	252	755	0	ENST00000329236.7:c.1492G>T	p.Glu498Ter	p.E498*	ENST00000329236	NM_001204466.1	498	Gag/Tag																																																																															
NBN	4683	MSKCC	GRCh37	8	90983475	90983475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015554-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			586	474	560	0	ENST00000265433.3:c.628G>T	p.Val210Phe	p.V210F	ENST00000265433	NM_002485.4	210	Gtt/Ttt																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17743021	17743021	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015554-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			1174	233	897	0	ENST00000250003.3:c.929G>T	p.Gly310Val	p.G310V	ENST00000250003	NM_002478.4	310	gGt/gTt																																																																															
FANCA	2175	MSKCC	GRCh37	16	89858952	89858952	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015554-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			492	492	794	0	ENST00000389301.3:c.1010C>G	p.Ser337Cys	p.S337C	ENST00000389301	NM_000135.2	337	tCt/tGt																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866344	37866344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015554-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			402	323	600	1	ENST00000269571.5:c.649C>T	p.Arg217Cys	p.R217C	ENST00000269571		217	Cgc/Tgc																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356428	66356428	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0015554-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			575	109	430	1	ENST00000273854.3:c.1069C>A	p.Pro357Thr	p.P357T	ENST00000273854	NM_004439.5	357	Ccc/Acc																																																																															
BRAF	673	MSKCC	GRCh37	7	140624406	140624406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015554-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			240	65	244	0	ENST00000288602.6:c.98C>A	p.Ala33Asp	p.A33D	ENST00000288602	NM_004333.4	33	gCc/gAc																																																																															
PREX2	80243	MSKCC	GRCh37	8	69050656	69050656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015554-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			914	62	483	0	ENST00000288368.4:c.3991G>A	p.Glu1331Lys	p.E1331K	ENST00000288368	NM_024870.2	1331	Gaa/Aaa																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713167	30713171	+	frameshift_variant	Frame_Shift_Del	DEL	ATTTC	ATTTC	G			P-0015554-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			536	59	601	0	ENST00000359013.4:c.567_571delATTTCinsG	p.Ile189MetfsTer3	p.I189Mfs*3	ENST00000359013	NM_001024847.2	189	atATTTCaa/atGaa																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246498725	246498725	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016319-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			273	240	988	0	ENST00000388985.4:c.280A>C	p.Lys94Gln	p.K94Q	ENST00000388985		94	Aaa/Caa																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67200884	67200884	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016319-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			54	391	1091	2	ENST00000312629.5:c.872A>T	p.Tyr291Phe	p.Y291F	ENST00000312629	NM_003952.2	291	tAc/tTc																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30098257	30098257	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016319-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			250	360	949	0	ENST00000331968.5:c.1715A>C	p.Gln572Pro	p.Q572P	ENST00000331968	NM_002742.2	572	cAa/cCa																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813732	50813732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016319-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			211	249	1355	3	ENST00000398568.2:c.1286G>A	p.Ser429Asn	p.S429N	ENST00000398568	NM_001042412.1	429	aGt/aAt																																																																															
CDH1	999	MSKCC	GRCh37	16	68771344	68771344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016319-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			118	89	396	0	ENST00000261769.5:c.26C>G	p.Ser9Trp	p.S9W	ENST00000261769	NM_004360.3	9	tCg/tGg																																																																															
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0016319-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			64	125	1012	3	ENST00000269305.4:c.96+1G>A		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																																
E2F3	1871	MSKCC	GRCh37	6	20483019	20483019	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016319-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			213	18	598	0	ENST00000346618.3:c.752G>T	p.Gly251Val	p.G251V	ENST00000346618	NM_001949.4	251	gGc/gTc																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188265	32188265	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016319-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			162	108	1228	2	ENST00000375023.3:c.1076G>A	p.Cys359Tyr	p.C359Y	ENST00000375023	NM_004557.3	359	tGt/tAt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55223550	55223550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016319-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			103	296	928	1	ENST00000275493.2:c.917C>T	p.Ser306Leu	p.S306L	ENST00000275493	NM_005228.3	306	tCg/tTg																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0016319-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			167	214	997	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152864480	152864481	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0016319-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			11	28	73	0	ENST00000406277.2:c.47dup	p.Ala19GlyfsTer37	p.A19Gfs*37	ENST00000406277	NM_152274.4	16	gag/gaAg																																																																															
ARID2	196528	MSKCC	GRCh37	12	46205287	46205287	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016360-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			438	469	855	0	ENST00000334344.6:c.371T>C	p.Ile124Thr	p.I124T	ENST00000334344	NM_152641.2	124	aTt/aCt																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443666	49443667	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016360-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			599	238	744	0	ENST00000301067.7:c.3704dup	p.Gly1236TrpfsTer14	p.G1236Wfs*14	ENST00000301067	NM_003482.3	1235	ggt/ggGt																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515378	103515378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016360-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			200	643	637	2	ENST00000355739.4:c.1879G>A	p.Ala627Thr	p.A627T	ENST00000355739	NM_000123.3	627	Gca/Aca																																																																															
MGA	23269	MSKCC	GRCh37	15	42003395	42003395	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016360-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			598	314	821	0	ENST00000219905.7:c.2932C>T	p.Gln978Ter	p.Q978*	ENST00000219905	NM_001164273.1	978	Caa/Taa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578533	7578535	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0016360-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			379	1003	1378	0	ENST00000269305.4:c.395_397del	p.Lys132del	p.K132del	ENST00000269305	NM_001126112.2	132	aAGAtg/atg																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7980058	7980058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016360-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			560	75	731	0	ENST00000319144.4:c.1279C>T	p.Leu427Phe	p.L427F	ENST00000319144	NM_001139.2	427	Ctc/Ttc																																																																															
PAK7	57144	MSKCC	GRCh37	20	9624810	9624811	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0016360-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			378	224	548	2	ENST00000353224.5:c.166_167delinsAT	p.Pro56Ile	p.P56I	ENST00000353224	NM_177990.2	56	CCt/ATt																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31023451	31023451	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016360-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			438	396	741	0	ENST00000375687.4:c.2936A>G	p.Asp979Gly	p.D979G	ENST00000375687	NM_015338.5	979	gAc/gGc																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164672	36164675	+	frameshift_variant	Frame_Shift_Del	DEL	GGGC	GGGC	-			P-0016360-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			720	313	992	0	ENST00000300305.3:c.1200_1203del	p.Ser402ThrfsTer191	p.S402Tfs*191	ENST00000300305		400	tcGCCC/tc																																																																															
HIST1H3H	8357	MSKCC	GRCh37	6	27778076	27778076	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016360-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			355	182	579	0	ENST00000369163.2:c.225C>G	p.Ile75Met	p.I75M	ENST00000369163	NM_003536.2	75	atC/atG																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519465	137519465	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016360-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			361	164	522	0	ENST00000367739.4:c.1173C>G	p.Ser391Arg	p.S391R	ENST00000367739	NM_000416.2	391	agC/agG																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522086	157522086	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016360-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			402	215	693	0	ENST00000346085.5:c.4358A>G	p.Gln1453Arg	p.Q1453R	ENST00000346085	NM_020732.3	1453	cAg/cGg																																																																															
NBN	4683	MSKCC	GRCh37	8	90955524	90955524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016360-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			685	138	812	3	ENST00000265433.3:c.2141G>A	p.Arg714Gln	p.R714Q	ENST00000265433	NM_002485.4	714	cGa/cAa																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891385	101891385	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0016360-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			678	112	610	0	ENST00000374994.4:c.343+3A>G		p.X115_splice	ENST00000374994	NM_004612.2	115																																																																																
KLF4	9314	MSKCC	GRCh37	9	110249909	110249959	+	inframe_deletion	In_Frame_Del	DEL	CAGGGCTGCCTTTGCTGACGCTGATGACCGACGGGCTGCCGTACTCGCTGC	CAGGGCTGCCTTTGCTGACGCTGATGACCGACGGGCTGCCGTACTCGCTGC	-			P-0016360-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			491	64	540	0	ENST00000374672.4:c.716_766delGCAGCGAGTACGGCAGCCCGTCGGTCATCAGCGTCAGCAAAGGCAGCCCTG	p.Gly239_Pro255del	p.G239_P255del	ENST00000374672	NM_004235.4	239	gGCAGCGAGTACGGCAGCCCGTCGGTCATCAGCGTCAGCAAAGGCAGCCCTGac/gac																																																																															
STAG2	10735	MSKCC	GRCh37	X	123195678	123195678	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016360-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			638	573	675	1	ENST00000218089.9:c.1592A>T	p.Gln531Leu	p.Q531L	ENST00000218089	NM_001042749.1	531	cAa/cTa																																																																															
MSH3	4437	MSKCC	GRCh37	5	79950732	79950732	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016360-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			90	205	450	0	ENST00000265081.6:c.186del	p.Pro64GlnfsTer16	p.P64Qfs*16	ENST00000265081	NM_002439.4	62	gcG/gc																																																																															
MSH3	4437	MSKCC	GRCh37	5	79950717	79950729	+	frameshift_variant	Frame_Shift_Del	DEL	CGCAGCGGCCGCA	CGCAGCGGCCGCA	-			P-0016360-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			105	210	454	0	ENST00000265081.6:c.171_183del	p.Ala58ArgfsTer18	p.A58Rfs*18	ENST00000265081	NM_002439.4	57	gcCGCAGCGGCCGCA/gc																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914592	32914592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017372-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			529	453	944	2	ENST00000380152.3:c.6100C>T	p.Arg2034Cys	p.R2034C	ENST00000380152		2034	Cgt/Tgt																																																																															
CDH1	999	MSKCC	GRCh37	16	68846071	68846103	+	inframe_deletion	In_Frame_Del	DEL	GCTGACCTTCAAGGTGAGGGGTTAAGCACAACA	GCTGACCTTCAAGGTGAGGGGTTAAGCACAACA	-			P-0017372-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			728	138	969	0	ENST00000261769.5:c.1044_1076del	p.Asp349_Ala359del	p.D349_A359del	ENST00000261769	NM_004360.3	348	GCTGACCTTCAAGGTGAGGGGTTAAGCACAACA/-																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31385080	31385080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017372-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			486	35	622	0	ENST00000328111.2:c.1465C>T	p.Leu489Phe	p.L489F	ENST00000328111	NM_006892.3	489	Ctt/Ttt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0017816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			761	273	1243	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10274018	10274018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			812	312	1225	2	ENST00000330684.3:c.251C>T	p.Thr84Met	p.T84M	ENST00000330684	NM_001134407.1	84	aCg/aTg																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943960	71943961	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0017816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			698	354	1125	2	ENST00000298229.2:c.1893_1894delCCinsAA	p.Leu632Ile	p.L632I	ENST00000298229	NM_001567.3	631	ctCCtc/ctAAtc																																																																															
IL10	3586	MSKCC	GRCh37	1	206942041	206942041	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			663	158	678	1	ENST00000423557.1:c.477T>A	p.Ser159Arg	p.S159R	ENST00000423557	NM_000572.2	159	agT/agA																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18793385	18793385	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			825	160	784	0	ENST00000266497.5:c.4082C>A	p.Pro1361His	p.P1361H	ENST00000266497		1361	cCc/cAc																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443788	49443789	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			1197	153	1460	0	ENST00000301067.7:c.3582_3583insT	p.Thr1195TyrfsTer12	p.T1195Yfs*12	ENST00000301067	NM_003482.3	1194	-/T																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50492506	50492506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			623	197	783	0	ENST00000394963.4:c.1402G>A	p.Asp468Asn	p.D468N	ENST00000394963	NM_003076.4	468	Gat/Aat																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557565	21557565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			340	553	1011	0	ENST00000382592.4:c.2280G>T	p.Met760Ile	p.M760I	ENST00000382592	NM_014572.2	760	atG/atT																																																																															
FLT1	2321	MSKCC	GRCh37	13	28896458	28896458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			658	228	888	0	ENST00000282397.4:c.2992G>T	p.Asp998Tyr	p.D998Y	ENST00000282397	NM_002019.4	998	Gat/Tat																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290912	15290912	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			1005	55	1047	0	ENST00000263388.2:c.3298C>A	p.Arg1100Ser	p.R1100S	ENST00000263388	NM_000435.2	1100	Cgt/Agt																																																																															
POLD1	5424	MSKCC	GRCh37	19	50919723	50919723	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			426	720	1147	1	ENST00000440232.2:c.2891A>G	p.Lys964Arg	p.K964R	ENST00000440232	NM_002691.3	964	aAg/aGg																																																																															
ACVR1	90	MSKCC	GRCh37	2	158617506	158617506	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			615	188	825	0	ENST00000263640.3:c.1150C>G	p.Pro384Ala	p.P384A	ENST00000263640	NM_001105.4	384	Ccc/Gcc																																																																															
TOP1	7150	MSKCC	GRCh37	20	39728813	39728813	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			720	57	814	0	ENST00000361337.2:c.1093G>T	p.Gly365Cys	p.G365C	ENST00000361337	NM_003286.2	365	Ggc/Tgc																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934749	49934749	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			872	49	1138	0	ENST00000296474.3:c.2147C>A	p.Ala716Asp	p.A716D	ENST00000296474	NM_002447.2	716	gCt/gAt																																																																															
ATR	545	MSKCC	GRCh37	3	142259770	142259770	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			469	509	843	0	ENST00000350721.4:c.3557A>T	p.Asp1186Val	p.D1186V	ENST00000350721	NM_001184.3	1186	gAt/gTt																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93956565	93956565	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			489	206	598	0	ENST00000369303.4:c.2671G>C	p.Asp891His	p.D891H	ENST00000369303	NM_004440.3	891	Gac/Cac																																																																															
BRAF	673	MSKCC	GRCh37	7	140624469	140624469	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			401	30	384	0	ENST00000288602.6:c.35C>A	p.Ala12Glu	p.A12E	ENST00000288602	NM_004333.4	12	gCg/gAg																																																																															
MED12	9968	MSKCC	GRCh37	X	70339931	70339931	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017816-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			778	43	597	2	ENST00000374080.3:c.464G>T	p.Arg155Leu	p.R155L	ENST00000374080		155	cGg/cTg																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0018579-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			869	103	1052	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0018579-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			577	86	818	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0018579-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			716	61	901	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																															
REL	5966	MSKCC	GRCh37	2	61149107	61149107	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs140572082		P-0018579-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			300	415	1030	0	ENST00000295025.8:c.1297A>G	p.Thr433Ala	p.T433A	ENST00000295025	NM_002908.2	433	Aca/Gca																																																																															
RAD50	10111	MSKCC	GRCh37	5	131940624	131940624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018579-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			474	462	892	1	ENST00000265335.6:c.2651G>A	p.Arg884His	p.R884H	ENST00000265335		884	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099446	27099446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018579-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			302	340	805	0	ENST00000324856.7:c.3683C>T	p.Pro1228Leu	p.P1228L	ENST00000324856	NM_006015.4	1228	cCa/cTa																																																																															
SLX4	84464	MSKCC	GRCh37	16	3640305	3640305	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018579-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			643	746	1660	0	ENST00000294008.3:c.3334A>G	p.Lys1112Glu	p.K1112E	ENST00000294008	NM_032444.2	1112	Aag/Gag																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641376	23641376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018579-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			1295	109	1428	0	ENST00000261584.4:c.2099C>T	p.Ser700Leu	p.S700L	ENST00000261584	NM_024675.3	700	tCa/tTa																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619401	1619401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200307903		P-0018579-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			494	536	1298	3	ENST00000344749.5:c.1240G>A	p.Asp414Asn	p.D414N	ENST00000344749	NM_001136139.2	414	Gac/Aac																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189891	66189891	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018579-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			620	66	847	0	ENST00000273854.3:c.3055A>T	p.Ile1019Phe	p.I1019F	ENST00000273854	NM_004439.5	1019	Atc/Ttc																																																																															
APC	324	MSKCC	GRCh37	5	112175211	112175211	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1801155		P-0019170-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			1	402	313	0	ENST00000257430.4:c.3920T>A	p.Ile1307Lys	p.I1307K	ENST00000257430	NM_000038.5	1307	aTa/aAa																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29091207	29091207	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137853011		P-0019170-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			102	77	125	2	ENST00000328354.6:c.1283C>T	p.Ser428Phe	p.S428F	ENST00000328354	NM_007194.3	428	tCt/tTt																																																																															
ICOSLG	23308	MSKCC	GRCh37	21	45651306	45651306	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019170-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			401	578	812	0	ENST00000407780.3:c.719A>G	p.Asp240Gly	p.D240G	ENST00000407780	NM_001283052.1	240	gAc/gGc																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130450	29130464	+	inframe_deletion	In_Frame_Del	DEL	TCCTCAGGTTCTTGG	TCCTCAGGTTCTTGG	-			P-0019170-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			596	52	813	0	ENST00000328354.6:c.246_260del	p.Asp82_Glu86del	p.D82_E86del	ENST00000328354	NM_007194.3	82	gaCCAAGAACCTGAGGAg/gag																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242442	55242443	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTAAAATTCCCGTCGCTA			P-0019170-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			712	143	794	0	ENST00000275493.2:c.2214_2231dup	p.Ile740_Lys745dup	p.I740_K745dup	ENST00000275493	NM_005228.3	740	gtt/gTTAAAATTCCCGTCGCTAtt																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0000165-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			489	318	382	4	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																															
SOX17	64321	MSKCC	GRCh37	8	55372283	55372283	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000165-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			547	55	324	0	ENST00000297316.4:c.973C>G	p.His325Asp	p.H325D	ENST00000297316	NM_022454.3	325	Cac/Gac																																																																															
RB1	5925	MSKCC	GRCh37	13	49030465	49030465	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000165-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			664	53	267	3	ENST00000267163.4:c.1940T>G	p.Leu647Arg	p.L647R	ENST00000267163	NM_000321.2	647	cTt/cGt																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0000165-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			223	303	278	7	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000165-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			524	14	505	0	ENST00000342988.3:c.1051G>T	p.Asp351Tyr	p.D351Y	ENST00000342988	NM_005359.5	351	Gat/Tat																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156834190	156834190	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000380-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			742	51	333	0	ENST00000524377.1:c.257A>T	p.Asp86Val	p.D86V	ENST00000524377	NM_002529.3	86	gAt/gTt																																																																															
ALK	238	MSKCC	GRCh37	2	29432710	29432710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000380-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1421	180	797	0	ENST00000389048.3:c.3778C>A	p.Pro1260Thr	p.P1260T	ENST00000389048	NM_004304.4	1260	Cca/Aca																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127511	55127511	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000380-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			805	239	431	0	ENST00000257290.5:c.299G>T	p.Cys100Phe	p.C100F	ENST00000257290	NM_006206.4	100	tGc/tTc																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149511589	149511589	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000380-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			646	325	483	0	ENST00000261799.4:c.1196T>G	p.Phe399Cys	p.F399C	ENST00000261799	NM_002609.3	399	tTc/tGc																																																																															
PAX5	5079	MSKCC	GRCh37	9	36840595	36840595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000380-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			530	152	378	0	ENST00000358127.4:c.1138G>T	p.Ala380Ser	p.A380S	ENST00000358127	NM_001280556.1	380	Gcc/Tcc																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000380-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			401	211	323	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																															
ETV1	2115	MSKCC	GRCh37	7	13935508	13935508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000411-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			309	131	238	0	ENST00000405192.2:c.1348G>A	p.Glu450Lys	p.E450K	ENST00000405192	NM_001163147.1	450	Gaa/Aaa																																																																															
ATM	472	MSKCC	GRCh37	11	108199854	108199854	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000411-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			239	196	298	1	ENST00000278616.4:c.7196A>G	p.Gln2399Arg	p.Q2399R	ENST00000278616	NM_000051.3	2399	cAa/cGa																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589629	67589630	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGA			P-0000411-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			482	180	192	0	ENST00000274335.5:c.1393_1395dupAGA	p.Arg465dup	p.R465dup	ENST00000274335		465	-/AGA																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087362	27087362	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000649-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			323	61	650	0	ENST00000324856.7:c.1936A>G	p.Ile646Val	p.I646V	ENST00000324856	NM_006015.4	646	Ata/Gta																																																																															
SETD2	29072	MSKCC	GRCh37	3	47158117	47158117	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000649-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			374	99	964	0	ENST00000409792.3:c.4582G>T	p.Glu1528Ter	p.E1528*	ENST00000409792	NM_014159.6	1528	Gaa/Taa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005422	150005422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000649-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			322	71	859	0	ENST00000253339.5:c.803G>A	p.Trp268Ter	p.W268*	ENST00000253339		268	tGg/tAg																																																																															
MLL3	58508	MSKCC	GRCh37	7	151877205	151877205	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0000649-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			243	20	327	0	ENST00000262189.6:c.7156A>T	p.Lys2386Ter	p.K2386*	ENST00000262189	NM_170606.2	2386	Aag/Tag																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737678	145737678	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000649-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			160	26	427	0	ENST00000428558.2:c.3085G>C	p.Glu1029Gln	p.E1029Q	ENST00000428558	NM_004260.3	1029	Gag/Cag																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115913	8115913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000649-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			252	36	435	1	ENST00000346208.3:c.1259C>T	p.Thr420Met	p.T420M	ENST00000346208		420	aCg/aTg																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3828812	3828812	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000649-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			419	65	749	0	ENST00000262367.5:c.1830A>T	p.Gln610His	p.Q610H	ENST00000262367	NM_004380.2	610	caA/caT																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3819201	3819201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000649-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			481	48	737	0	ENST00000262367.5:c.3034G>A	p.Glu1012Lys	p.E1012K	ENST00000262367	NM_004380.2	1012	Gaa/Aaa																																																																															
TP53	7157	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000935-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			121	201	198	0	ENST00000269305.4:c.400T>G	p.Phe134Val	p.F134V	ENST00000269305	NM_001126112.2	134	Ttt/Gtt																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0001318-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			742	113	560	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089562	27089562	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001318-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			731	135	514	0	ENST00000324856.7:c.2518C>T	p.Gln840Ter	p.Q840*	ENST00000324856	NM_006015.4	840	Caa/Taa																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247243	153247243	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001318-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			849	56	605	1	ENST00000281708.4:c.1559A>G	p.Asp520Gly	p.D520G	ENST00000281708	NM_033632.3	520	gAt/gGt																																																																															
APC	324	MSKCC	GRCh37	5	112175101	112175101	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0001318-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			477	60	245	0	ENST00000257430.4:c.3810T>A	p.Cys1270Ter	p.C1270*	ENST00000257430	NM_000038.5	1270	tgT/tgA																																																																															
PARK2	5071	MSKCC	GRCh37	6	162475206	162475206	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0001318-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			693	47	445	0	ENST00000366898.1:c.535G>T	p.Gly179Cys	p.G179C	ENST00000366898	NM_004562.2	179	Ggt/Tgt																																																																															
ERG	2078	MSKCC	GRCh37	21	39775467	39775467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001318-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			694	79	419	0	ENST00000288319.7:c.553G>A	p.Ala185Thr	p.A185T	ENST00000288319	NM_182918.3	185	Gcc/Acc																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332606	153332607	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCTCCTC			P-0001318-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			821	51	511	0	ENST00000281708.4:c.343_349dup	p.Glu117GlyfsTer9	p.E117Gfs*9	ENST00000281708	NM_033632.3	117	gag/gGAGGAGGag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001351-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			176	39	158	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0001351-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			150	20	102	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120461177	120461177	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0001351-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			216	38	185	0	ENST00000256646.2:c.5782-1G>C		p.X1928_splice	ENST00000256646	NM_024408.3	1928																																																																																
RFWD2	64326	MSKCC	GRCh37	1	176132067	176132067	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001351-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			431	85	508	0	ENST00000367669.3:c.700G>C	p.Asp234His	p.D234H	ENST00000367669	NM_022457.5	234	Gat/Cat																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248734	212248734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001351-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			404	60	330	0	ENST00000342788.4:c.3533G>A	p.Gly1178Glu	p.G1178E	ENST00000342788	NM_005235.2	1178	gGa/gAa																																																																															
ATR	545	MSKCC	GRCh37	3	142268413	142268413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001351-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			334	100	398	0	ENST00000350721.4:c.3079G>A	p.Glu1027Lys	p.E1027K	ENST00000350721	NM_001184.3	1027	Gag/Aag																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752375	57752375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001351-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			432	188	446	0	ENST00000274289.3:c.1198C>T	p.His400Tyr	p.H400Y	ENST00000274289	NM_006622.3	400	Cat/Tat																																																																															
PLK2	10769	MSKCC	GRCh37	5	57753917	57753917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001351-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			647	94	443	0	ENST00000274289.3:c.707G>A	p.Arg236Lys	p.R236K	ENST00000274289	NM_006622.3	236	aGa/aAa																																																																															
MLL3	58508	MSKCC	GRCh37	7	151845739	151845739	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001351-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			287	116	434	1	ENST00000262189.6:c.13273G>C	p.Asp4425His	p.D4425H	ENST00000262189	NM_170606.2	4425	Gat/Cat																																																																															
MLL3	58508	MSKCC	GRCh37	7	151873831	151873831	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001351-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			308	114	439	0	ENST00000262189.6:c.8707C>G	p.Gln2903Glu	p.Q2903E	ENST00000262189	NM_170606.2	2903	Caa/Gaa																																																																															
MLL3	58508	MSKCC	GRCh37	7	151874176	151874176	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001351-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			257	79	457	0	ENST00000262189.6:c.8362C>T	p.Gln2788Ter	p.Q2788*	ENST00000262189	NM_170606.2	2788	Cag/Tag																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64126894	64126894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001351-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			174	59	286	0	ENST00000334205.4:c.100G>A	p.Glu34Lys	p.E34K	ENST00000334205	NM_003942.2	34	Gag/Aag																																																																															
KDM5A	5927	MSKCC	GRCh37	12	431659	431659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001351-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			334	79	476	0	ENST00000399788.2:c.2350C>T	p.Leu784Phe	p.L784F	ENST00000399788	NM_001042603.1	784	Ctc/Ttc																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115436	115115436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001351-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			227	407	587	1	ENST00000257566.3:c.890A>G	p.Asn297Ser	p.N297S	ENST00000257566	NM_016569.3	297	aAc/aGc																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355129	73355129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001351-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			324	35	355	0	ENST00000377767.4:c.241G>A	p.Glu81Lys	p.E81K	ENST00000377767	NM_014953.3	81	Gag/Aag																																																																															
NF1	4763	MSKCC	GRCh37	17	29576050	29576050	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001351-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			327	57	493	2	ENST00000358273.4:c.4023G>T	p.Gln1341His	p.Q1341H	ENST00000358273	NM_001042492.2	1341	caG/caT																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600382	10600382	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001351-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			196	53	553	0	ENST00000171111.5:c.1473C>A	p.Tyr491Ter	p.Y491*	ENST00000171111	NM_203500.1	491	taC/taA																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40979290	40979290	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001351-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			232	44	246	0	ENST00000373198.4:c.1843C>T	p.Gln615Ter	p.Q615*	ENST00000373198	NM_133170.3	615	Cag/Tag																																																																															
CDH1	999	MSKCC	GRCh37	16	68856040	68856041	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001351-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			186	166	559	0	ENST00000261769.5:c.1849dup	p.Ala617GlyfsTer46	p.A617Gfs*46	ENST00000261769	NM_004360.3	616	-/G																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0001620-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			598	298	472	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001620-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			398	221	516	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178685	56178685	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001620-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			304	202	275	1	ENST00000399503.3:c.3658C>T	p.Gln1220Ter	p.Q1220*	ENST00000399503	NM_005921.1	1220	Caa/Taa																																																																															
MLL3	58508	MSKCC	GRCh37	7	151960210	151960210	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001620-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			213	135	224	0	ENST00000262189.6:c.1190C>A	p.Ser397Ter	p.S397*	ENST00000262189	NM_170606.2	397	tCg/tAg																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0001620-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			79	136	250	0	ENST00000412916.2:c.165+1G>C		p.X55_splice	ENST00000412916		55																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56179368	56179369	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0001620-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			608	353	482	0	ENST00000399503.3:c.3683dup	p.Gly1229ArgfsTer10	p.G1229Rfs*10	ENST00000399503	NM_005921.1	1227	-/C																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120673	115120674	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCTTTAGC			P-0001620-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			726	99	600	0	ENST00000257566.3:c.325_332dup	p.Trp113LysfsTer29	p.W113Kfs*29	ENST00000257566	NM_016569.3	111	gaa/gaGCTAAAGAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001627-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			615	154	404	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952086	178952086	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001627-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			678	90	460	0	ENST00000263967.3:c.3141T>A	p.His1047Gln	p.H1047Q	ENST00000263967	NM_006218.2	1047	caT/caA																																																																															
TERT	7015	MSKCC	GRCh37	5	1293664	1293664	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111952055		P-0001627-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			485	859	310	1	ENST00000310581.5:c.1337G>A	p.Arg446His	p.R446H	ENST00000310581	NM_198253.2	446	cGt/cAt																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0002117-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			45	67	100	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																															
GATA2	2624	MSKCC	GRCh37	3	128205119	128205119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002117-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			236	125	277	2	ENST00000341105.2:c.322G>A	p.Ala108Thr	p.A108T	ENST00000341105	NM_032638.4	108	Gct/Act																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138196090	138196090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002117-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			375	80	501	0	ENST00000237289.4:c.404C>A	p.Thr135Lys	p.T135K	ENST00000237289	NM_001270507.1	135	aCa/aAa																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125513792	125513792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002117-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			868	80	538	0	ENST00000428830.2:c.920C>T	p.Ser307Phe	p.S307F	ENST00000428830	NM_001114121.2	307	tCt/tTt																																																																															
AR	367	MSKCC	GRCh37	X	66766238	66766238	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1327366080		P-0002117-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			284	45	174	0	ENST00000374690.3:c.1250C>T	p.Ala417Val	p.A417V	ENST00000374690	NM_000044.3	417	gCg/gTg																																																																															
ATRX	546	MSKCC	GRCh37	X	76939669	76939669	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002117-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			573	665	799	0	ENST00000373344.5:c.1079T>A	p.Ile360Asn	p.I360N	ENST00000373344	NM_000489.3	360	aTt/aAt																																																																															
ARID2	196528	MSKCC	GRCh37	12	46125045	46125045	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002117-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			483	114	523	0	ENST00000334344.6:c.234del	p.Arg80GlufsTer10	p.R80Efs*10	ENST00000334344	NM_152641.2	78	Ttt/tt																																																																															
FAT1	2195	MSKCC	GRCh37	4	187519175	187519175	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138084499		P-0002391-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			700	356	218	0	ENST00000441802.2:c.12208G>A	p.Asp4070Asn	p.D4070N	ENST00000441802	NM_005245.3	4070	Gac/Aac																																																																															
MLL2	8085	MSKCC	GRCh37	12	49433301	49433301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002391-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			373	190	134	0	ENST00000301067.7:c.8146C>T	p.Pro2716Ser	p.P2716S	ENST00000301067	NM_003482.3	2716	Cct/Tct																																																																															
POLE	5426	MSKCC	GRCh37	12	133220425	133220425	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0002391-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			398	227	145	0	ENST00000320574.5:c.4288C>T	p.Gln1430Ter	p.Q1430*	ENST00000320574	NM_006231.2	1430	Cag/Tag																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500637	99500637	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200539075		P-0002391-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			371	149	160	0	ENST00000268035.6:c.4070G>A	p.Arg1357Gln	p.R1357Q	ENST00000268035	NM_000875.3	1357	cGg/cAg																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575144	64575144	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002391-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			228	181	135	0	ENST00000337652.1:c.678del	p.Tyr227ThrfsTer2	p.Y227Tfs*2	ENST00000337652	NM_130803.2	226	ctG/ct																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002527-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			423	266	300	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																															
MYCL1	4610	MSKCC	GRCh37	1	40366893	40366893	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002527-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			383	272	376	0	ENST00000397332.2:c.304G>C	p.Glu102Gln	p.E102Q	ENST00000397332	NM_001033082.2	102	Gaa/Caa																																																																															
TET2	54790	MSKCC	GRCh37	4	106156899	106156899	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002527-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			463	285	396	0	ENST00000380013.4:c.1800G>T	p.Met600Ile	p.M600I	ENST00000380013	NM_001127208.2	600	atG/atT																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730844	40730844	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002527-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			539	142	311	0	ENST00000373198.4:c.3691C>A	p.Leu1231Met	p.L1231M	ENST00000373198	NM_133170.3	1231	Ctg/Atg																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871052	12871053	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002527-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			432	245	242	1	ENST00000228872.4:c.285dup	p.Lys96GlnfsTer29	p.K96Qfs*29	ENST00000228872	NM_004064.3	93	-/C																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002563-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			655	308	1248	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0002563-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			300	119	951	1	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																															
REL	5966	MSKCC	GRCh37	2	61145657	61145657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002563-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			300	272	1274	3	ENST00000295025.8:c.769G>A	p.Val257Ile	p.V257I	ENST00000295025	NM_002908.2	257	Gta/Ata																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061183	38061183	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002563-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			94	110	464	1	ENST00000250448.2:c.806A>T	p.Glu269Val	p.E269V	ENST00000250448	NM_004496.3	269	gAg/gTg																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002563-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			339	67	1225	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																															
APC	324	MSKCC	GRCh37	5	112175314	112175314	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002563-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			363	47	955	0	ENST00000257430.4:c.4025delT	p.Leu1342TyrfsTer73	p.L1342Yfs*73	ENST00000257430	NM_000038.5	1341	agT/ag																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003648-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			665	101	605	1	ENST00000342988.3:c.1051G>T	p.Asp351Tyr	p.D351Y	ENST00000342988	NM_005359.5	351	Gat/Tat																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945696	17945696	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3213409		P-0003648-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			252	257	511	0	ENST00000458235.1:c.2164G>A	p.Val722Ile	p.V722I	ENST00000458235	NM_000215.3	722	Gtc/Atc																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026308	48026308	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003648-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			282	257	394	0	ENST00000234420.5:c.1186C>G	p.Leu396Val	p.L396V	ENST00000234420	NM_000179.2	396	Ctc/Gtc																																																																															
JAK1	3716	MSKCC	GRCh37	1	65344831	65344831	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003648-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			185	203	398	0	ENST00000342505.4:c.206G>A	p.Arg69His	p.R69H	ENST00000342505	NM_002227.2	69	cGt/cAt																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728517	190728517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003648-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			564	67	407	0	ENST00000441310.2:c.1905G>A	p.Met635Ile	p.M635I	ENST00000441310	NM_000534.4	635	atG/atA																																																																															
TET2	54790	MSKCC	GRCh37	4	106156698	106156698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003648-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			407	390	632	0	ENST00000380013.4:c.1599G>A	p.Met533Ile	p.M533I	ENST00000380013	NM_001127208.2	533	atG/atA																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111596	56111596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003648-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			277	15	398	3	ENST00000399503.3:c.196C>T	p.Arg66Trp	p.R66W	ENST00000399503	NM_005921.1	66	Cgg/Tgg																																																																															
MED12	9968	MSKCC	GRCh37	X	70343461	70343465	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCG	AGCCG	-			P-0003648-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			863	118	658	0	ENST00000374080.3:c.1635_1639del	p.Glu545AspfsTer3	p.E545Dfs*3	ENST00000374080		545	gaAGCCGca/gaca																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36651923	36651928	+	inframe_deletion	In_Frame_Del	DEL	CAAGGC	CAAGGC	-			P-0003648-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			352	21	447	0	ENST00000244741.5:c.46_51del	p.Lys16_Ala17del	p.K16_A17del	ENST00000244741	NM_000389.4	15	agCAAGGCc/agc																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006654-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			941	32	697	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0006654-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			959	34	990	4	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																															
ATM	472	MSKCC	GRCh37	11	108216546	108216546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006654-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			567	575	1055	2	ENST00000278616.4:c.8495G>A	p.Arg2832His	p.R2832H	ENST00000278616	NM_000051.3	2832	cGt/cAt																																																																															
TERT	7015	MSKCC	GRCh37	5	1294377	1294377	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006654-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			255	254	398	0	ENST00000310581.5:c.624G>T	p.Arg208Ser	p.R208S	ENST00000310581	NM_198253.2	208	agG/agT																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752783	57752783	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006654-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			443	423	794	0	ENST00000274289.3:c.1145T>C	p.Ile382Thr	p.I382T	ENST00000274289	NM_006622.3	382	aTt/aCt																																																																															
RAD50	10111	MSKCC	GRCh37	5	131930719	131930719	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006654-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			564	482	839	1	ENST00000265335.6:c.1952A>T	p.Lys651Ile	p.K651I	ENST00000265335		651	aAa/aTa																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517552	176517552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006654-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			442	459	664	0	ENST00000292408.4:c.253C>T	p.Arg85Cys	p.R85C	ENST00000292408	NM_213647.1	85	Cgc/Tgc																																																																															
KLF4	9314	MSKCC	GRCh37	9	110250344	110250344	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006654-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			602	537	1041	1	ENST00000374672.4:c.331A>C	p.Asn111His	p.N111H	ENST00000374672	NM_004235.4	111	Aat/Cat																																																																															
PTEN	5728	MSKCC	GRCh37	10	89725043	89725043	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0006654-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			958	58	899	0	ENST00000371953.3:c.1027-1G>C		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																																
RPS6KA4	8986	MSKCC	GRCh37	11	64129199	64129199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006654-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			493	471	775	0	ENST00000334205.4:c.737C>T	p.Thr246Met	p.T246M	ENST00000334205	NM_003942.2	246	aCg/aTg																																																																															
MLL2	8085	MSKCC	GRCh37	12	49420664	49420664	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006654-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			6	693	758	0	ENST00000301067.7:c.15085A>C	p.Met5029Leu	p.M5029L	ENST00000301067	NM_003482.3	5029	Atg/Ctg																																																																															
GLI1	2735	MSKCC	GRCh37	12	57859007	57859007	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006654-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			658	593	1094	1	ENST00000228682.2:c.503C>G	p.Pro168Arg	p.P168R	ENST00000228682	NM_005269.2	168	cCt/cGt																																																																															
RARA	5914	MSKCC	GRCh37	17	38487608	38487608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006654-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			606	563	903	1	ENST00000254066.5:c.138C>A	p.His46Gln	p.H46Q	ENST00000254066	NM_000964.3	46	caC/caA																																																																															
CIC	23152	MSKCC	GRCh37	19	42794941	42794941	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006654-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			256	265	502	0	ENST00000575354.2:c.2021A>G	p.Asn674Ser	p.N674S	ENST00000575354	NM_015125.3	674	aAt/aGt																																																																															
MLL3	58508	MSKCC	GRCh37	7	151945036	151945036	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006728-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			109	27	272	1	ENST00000262189.6:c.2483C>A	p.Pro828Gln	p.P828Q	ENST00000262189	NM_170606.2	828	cCa/cAa																																																																															
MLL3	58508	MSKCC	GRCh37	7	151932996	151932996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006728-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			70	38	213	0	ENST00000262189.6:c.2675G>A	p.Gly892Glu	p.G892E	ENST00000262189	NM_170606.2	892	gGa/gAa																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006728-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			258	598	634	2	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																															
NF1	4763	MSKCC	GRCh37	17	29486070	29486070	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006728-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			356	99	568	1	ENST00000358273.4:c.247C>T	p.Gln83Ter	p.Q83*	ENST00000358273	NM_001042492.2	83	Cag/Tag																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032138	26032138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006728-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			984	247	1806	0	ENST00000244661.2:c.151G>A	p.Glu51Lys	p.E51K	ENST00000244661	NM_003537.3	51	Gag/Aag																																																																															
STK11	6794	MSKCC	GRCh37	19	1221994	1221994	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006728-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			197	329	507	0	ENST00000326873.7:c.909C>G	p.Ile303Met	p.I303M	ENST00000326873	NM_000455.4	303	atC/atG																																																																															
SDHA	6389	MSKCC	GRCh37	5	240560	240560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006728-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			66	47	76	0	ENST00000264932.6:c.1520G>A	p.Arg507Lys	p.R507K	ENST00000264932	NM_004168.2	507	aGa/aAa																																																																															
LATS1	9113	MSKCC	GRCh37	6	150016231	150016231	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006728-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			201	302	688	0	ENST00000253339.5:c.475A>G	p.Ile159Val	p.I159V	ENST00000253339		159	Att/Gtt																																																																															
ABL1	25	MSKCC	GRCh37	9	133755478	133755478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006728-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			400	358	780	1	ENST00000318560.5:c.1447C>T	p.Arg483Trp	p.R483W	ENST00000318560	NM_005157.4	483	Cgg/Tgg																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600324	10600324	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006728-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			172	308	404	0	ENST00000171111.5:c.1531G>A	p.Gly511Ser	p.G511S	ENST00000171111	NM_203500.1	511	Ggc/Agc																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410081	63410081	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006728-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			714	404	803	2	ENST00000330258.3:c.3086C>A	p.Pro1029His	p.P1029H	ENST00000330258	NM_152424.3	1029	cCc/cAc																																																																															
AR	367	MSKCC	GRCh37	X	66931342	66931342	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006728-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			769	457	907	0	ENST00000374690.3:c.1984G>C	p.Val662Leu	p.V662L	ENST00000374690	NM_000044.3	662	Gtg/Ctg																																																																															
ATRX	546	MSKCC	GRCh37	X	76855276	76855276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006728-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			446	294	702	0	ENST00000373344.5:c.5711A>T	p.Glu1904Val	p.E1904V	ENST00000373344	NM_000489.3	1904	gAa/gTa																																																																															
HGF	3082	MSKCC	GRCh37	7	81355295	81355296	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006728-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			308	133	954	0	ENST00000222390.5:c.1078dup	p.Ser360PhefsTer2	p.S360Ffs*2	ENST00000222390	NM_000601.4	360	tct/tTct																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797228	45797228	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012508-T02-IM5									Unknown	UNKNOWN				MSK-IMPACT			214	380	672	0	ENST00000372115.3:c.1145G>A	p.Gly382Asp	p.G382D	ENST00000372115	NM_001048171.1	382	gGt/gAt																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012508-T02-IM5									Unknown	UNKNOWN				MSK-IMPACT			610	105	939	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																															
TSC2	7249	MSKCC	GRCh37	16	2138570	2138570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012508-T02-IM5									Unknown	UNKNOWN				MSK-IMPACT			542	470	894	5	ENST00000219476.3:c.5383C>T	p.Arg1795Cys	p.R1795C	ENST00000219476	NM_000548.3	1795	Cgc/Tgc																																																																															
PMS1	5378	MSKCC	GRCh37	2	190738333	190738333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012508-T02-IM5									Unknown	UNKNOWN				MSK-IMPACT			619	107	771	1	ENST00000441310.2:c.2585C>A	p.Ala862Glu	p.A862E	ENST00000441310	NM_000534.4	862	gCa/gAa																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508124	106508124	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012508-T02-IM5									Unknown	UNKNOWN				MSK-IMPACT			232	203	508	0	ENST00000359195.3:c.118A>T	p.Ile40Phe	p.I40F	ENST00000359195	NM_002649.2	40	Atc/Ttc																																																																															
FLCN	201163	MSKCC	GRCh37	17	17119719	17119719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012508-T02-IM5									Unknown	UNKNOWN				MSK-IMPACT			673	130	734	0	ENST00000285071.4:c.1275G>T	p.Gln425His	p.Q425H	ENST00000285071	NM_144997.5	425	caG/caT																																																																															
NF1	4763	MSKCC	GRCh37	17	29588733	29588733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012508-T02-IM5									Unknown	UNKNOWN				MSK-IMPACT			702	173	989	2	ENST00000358273.4:c.4582C>T	p.His1528Tyr	p.H1528Y	ENST00000358273	NM_001042492.2	1528	Cat/Tat																																																																															
SRC	6714	MSKCC	GRCh37	20	36024568	36024568	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012508-T02-IM5									Unknown	UNKNOWN				MSK-IMPACT			809	205	877	0	ENST00000358208.4:c.557C>G	p.Ala186Gly	p.A186G	ENST00000358208		186	gCc/gGc																																																																															
APC	324	MSKCC	GRCh37	5	112176070	112176070	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012508-T02-IM5									Unknown	UNKNOWN				MSK-IMPACT			481	127	894	0	ENST00000257430.4:c.4779delG	p.Lys1593AsnfsTer57	p.K1593Nfs*57	ENST00000257430	NM_000038.5	1593	aaG/aa																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564540	86564560	+	inframe_deletion	In_Frame_Del	DEL	CTGCTGCTGGCGTAGCTGGTG	CTGCTGCTGGCGTAGCTGGTG	-			P-0012508-T02-IM5									Unknown	UNKNOWN				MSK-IMPACT			398	128	754	0	ENST00000274376.6:c.285_305del	p.Ala100_Ala106del	p.A100_A106del	ENST00000274376	NM_002890.2	91	aCTGCTGCTGGCGTAGCTGGTGct/act																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244219	41244221	+	inframe_deletion	In_Frame_Del	DEL	TTT	TTT	-			P-0012508-T02-IM5									Unknown	UNKNOWN				MSK-IMPACT			419	360	829	0	ENST00000357654.3:c.3327_3329delAAA	p.Lys1110del	p.K1110del	ENST00000357654	NM_007294.3	1109	aaAAAg/aag																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027313	48027313	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000077-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			612	363	273	0	ENST00000234420.5:c.2191C>A	p.Gln731Lys	p.Q731K	ENST00000234420	NM_000179.2	731	Caa/Aaa																																													NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31021228	31021228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000077-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			974	122	270	0	ENST00000375687.4:c.1227G>T	p.Lys409Asn	p.K409N	ENST00000375687	NM_015338.5	409	aaG/aaT																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010173-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			583	87	742	1	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0010173-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			734	101	880	1	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398286	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0010173-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			775	80	981	0	ENST00000256078.4:c.33_34delinsCT	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	11	gcTGgt/gcCTgt																																													NEWRECORD																																		
MLL2	8085	MSKCC	GRCh37	12	49436661	49436661	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0010173-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			521	77	656	0	ENST00000301067.7:c.5645A>T	p.Glu1882Val	p.E1882V	ENST00000301067	NM_003482.3	1882	gAa/gTa																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72993104	72993104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010173-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			671	686	1352	2	ENST00000268489.5:c.941G>A	p.Arg314Gln	p.R314Q	ENST00000268489	NM_006885.3	314	cGg/cAg																																													NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10257150	10257150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010173-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			274	349	718	3	ENST00000340748.4:c.2723C>T	p.Pro908Leu	p.P908L	ENST00000340748		908	cCc/cTc																																													NEWRECORD																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52722948	52722948	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010173-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			463	128	839	0	ENST00000322088.6:c.1133C>G	p.Pro378Arg	p.P378R	ENST00000322088	NM_014225.5	378	cCt/cGt																																													NEWRECORD																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52723017	52723017	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010173-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			587	139	952	0	ENST00000322088.6:c.1202C>G	p.Ser401Cys	p.S401C	ENST00000322088	NM_014225.5	401	tCc/tGc																																													NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40944380	40944380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010173-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			744	81	959	0	ENST00000373198.4:c.2122C>T	p.Leu708Phe	p.L708F	ENST00000373198	NM_133170.3	708	Ctc/Ttc																																													NEWRECORD																																		
CCNE1	898	MSKCC	GRCh37	19	30314599	30314599	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010173-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			1036	138	944	0	ENST00000262643.3:c.1151del	p.Asn384IlefsTer118	p.N384Ifs*118	ENST00000262643	NM_001238.2	383	cAa/ca																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30691881	30691882	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010173-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			563	67	948	0	ENST00000359013.4:c.458_459insT	p.Lys153AsnfsTer4	p.K153Nfs*4	ENST00000359013	NM_001024847.2	153	aag/aaTg																																													NEWRECORD																																		
PAK7	57144	MSKCC	GRCh37	20	9561465	9561466	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0010173-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			623	66	1044	1	ENST00000353224.5:c.316_317delinsAA	p.Pro106Asn	p.P106N	ENST00000353224	NM_177990.2	106	CCc/AAc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0000788-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			103	18	91	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0000788-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			314	143	212	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175852	112175852	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000788-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			157	47	182	0	ENST00000257430.4:c.4561G>T	p.Glu1521Ter	p.E1521*	ENST00000257430	NM_000038.5	1521	Gaa/Taa																																													NEWRECORD																																		
MYD88	4615	MSKCC	GRCh37	3	38181941	38181941	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000788-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			354	130	192	0	ENST00000396334.3:c.565C>T	p.Gln189Ter	p.Q189*	ENST00000396334	NM_002468.4	189	Cag/Tag																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47147611	47147611	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0000788-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			131	21	169	0	ENST00000409792.3:c.4716-1G>A		p.X1572_splice	ENST00000409792	NM_014159.6	1572																																														NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178951975	178951975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000788-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			313	33	301	0	ENST00000263967.3:c.3030G>A	p.Met1010Ile	p.M1010I	ENST00000263967	NM_006218.2	1010	atG/atA																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112163698	112163698	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000788-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			358	83	427	0	ENST00000257430.4:c.1621C>T	p.Gln541Ter	p.Q541*	ENST00000257430	NM_000038.5	541	Cag/Tag																																													NEWRECORD																																		
FLT4	2324	MSKCC	GRCh37	5	180030344	180030344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000788-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			411	169	690	0	ENST00000261937.6:c.3940G>A	p.Asp1314Asn	p.D1314N	ENST00000261937	NM_182925.4	1314	Gac/Aac																																													NEWRECORD																																		
SMAD3	4088	MSKCC	GRCh37	15	67479795	67479795	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000788-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			433	148	404	0	ENST00000327367.4:c.1102C>T	p.Arg368Ter	p.R368*	ENST00000327367	NM_005902.3	368	Cga/Tga																																													NEWRECORD																																		
RPTOR	57521	MSKCC	GRCh37	17	78935196	78935196	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0000788-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			392	58	262	0	ENST00000306801.3:c.3608G>A	p.Arg1203His	p.R1203H	ENST00000306801	NM_020761.2	1203	cGc/cAc																																													NEWRECORD																																		
SMAD2	4087	MSKCC	GRCh37	18	45374944	45374944	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000788-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			283	76	297	0	ENST00000262160.6:c.899A>G	p.Asp300Gly	p.D300G	ENST00000262160	NM_005901.5	300	gAt/gGt																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5221144	5221144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000788-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			322	36	219	0	ENST00000357368.4:c.3322G>A	p.Gly1108Ser	p.G1108S	ENST00000357368	NM_002850.3	1108	Ggc/Agc																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47165212	47165213	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000788-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			267	43	344	0	ENST00000409792.3:c.913dup	p.Thr305AsnfsTer4	p.T305Nfs*4	ENST00000409792	NM_014159.6	305	aca/aAca																																													NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63532653	63532654	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000788-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			210	78	172	0	ENST00000307078.5:c.1925dupA	p.Ala643GlyfsTer64	p.A643Gfs*64	ENST00000307078	NM_004655.3	642	aag/aaAg																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0000788-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			339	132	424	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008359-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			421	71	523	0	ENST00000269305.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000269305	NM_001126112.2	105	Ggc/Tgc																																													NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215645983	215645984	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008359-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			350	35	930	0	ENST00000260947.4:c.614dup	p.Gln206AlafsTer8	p.Q206Afs*8	ENST00000260947	NM_000465.2	205	aag/aaAg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139401883	139401883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008359-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			180	171	419	0	ENST00000277541.6:c.3517G>T	p.Ala1173Ser	p.A1173S	ENST00000277541	NM_017617.3	1173	Gcc/Tcc																																													NEWRECORD																																		
REL	5966	MSKCC	GRCh37	2	61121613	61121613	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008359-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			287	22	791	0	ENST00000295025.8:c.235T>G	p.Leu79Val	p.L79V	ENST00000295025	NM_002908.2	79	Tta/Gta																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55141140	55141140	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0008359-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			355	35	492	0	ENST00000257290.5:c.1786G>C	p.Gly596Arg	p.G596R	ENST00000257290	NM_006206.4	596	Ggt/Cgt																																													NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55146588	55146588	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0008359-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			439	53	777	1	ENST00000257290.5:c.2262T>A	p.Tyr754Ter	p.Y754*	ENST00000257290	NM_006206.4	754	taT/taA																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1294330	1294330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008359-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			187	21	173	2	ENST00000310581.5:c.671G>A	p.Arg224His	p.R224H	ENST00000310581	NM_198253.2	224	cGc/cAc																																													NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56495610	56495610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008359-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			361	21	522	0	ENST00000267101.3:c.3800G>T	p.Arg1267Leu	p.R1267L	ENST00000267101	NM_001982.3	1267	cGa/cTa																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57865501	57865501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008359-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			374	372	1205	2	ENST00000228682.2:c.2978C>T	p.Pro993Leu	p.P993L	ENST00000228682	NM_005269.2	993	cCc/cTc																																													NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99478132	99478132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008359-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			511	50	860	0	ENST00000268035.6:c.3036G>A	p.Met1012Ile	p.M1012I	ENST00000268035	NM_000875.3	1012	atG/atA																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73334738	73334740	+	inframe_deletion	In_Frame_Del	DEL	TAA	TAA	-			P-0008359-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			174	31	854	0	ENST00000377767.4:c.2720_2722del	p.Val907_Lys908delinsGlu	p.V907_K908delinsE	ENST00000377767	NM_014953.3	907	gTTAaa/gaa																																													NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29509620	29509621	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008359-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			289	45	710	0	ENST00000358273.4:c.827dup	p.Leu276PhefsTer15	p.L276Ffs*15	ENST00000358273	NM_001042492.2	275	-/T																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000612-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			407	251	227	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																													NEWRECORD																																		
RARA	5914	MSKCC	GRCh37	17	38510572	38510572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000612-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			536	334	371	0	ENST00000254066.5:c.826C>T	p.Arg276Trp	p.R276W	ENST00000254066	NM_000964.3	276	Cgg/Tgg																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68857312	68857313	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0000612-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			124	408	260	0	ENST00000261769.5:c.1948_1949delAT	p.Ile650HisfsTer12	p.I650Hfs*12	ENST00000261769	NM_004360.3	649	tcTAtc/tctc																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	15942834	15942835	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000612-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			317	518	550	0	ENST00000268712.3:c.6867dupT	p.Met2290TyrfsTer17	p.M2290Yfs*17	ENST00000268712	NM_006311.3	2289	-/T																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0000205-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			897	528	753	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																													NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176722081	176722081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000205-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			401	557	745	0	ENST00000439151.2:c.7712G>A	p.Ser2571Asn	p.S2571N	ENST00000439151	NM_022455.4	2571	aGc/aAc																																													NEWRECORD																																		
HIST1H3A	8350	MSKCC	GRCh37	6	26021018	26021018	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000205-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			777	425	965	0	ENST00000357647.3:c.301T>G	p.Leu101Val	p.L101V	ENST00000357647	NM_003529.2	101	Ttg/Gtg																																													NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67644775	67644775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000205-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			902	183	809	1	ENST00000264010.4:c.40G>A	p.Glu14Lys	p.E14K	ENST00000264010	NM_006565.3	14	Gaa/Aaa																																													NEWRECORD																																		
FH	2271	MSKCC	GRCh37	1	241661227	241661228	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTT	rs367543046		P-0000205-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			782	628	993	0	ENST00000366560.3:c.1431_1433dup	p.Lys477dup	p.K477dup	ENST00000366560	NM_000143.3	477	aat/aaAAAt																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0000281-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			502	163	416	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0000703-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			175	51	202	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																													NEWRECORD																																		
RHOA	387	MSKCC	GRCh37	3	49405953	49405953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000703-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			423	230	454	0	ENST00000418115.1:c.185G>A	p.Gly62Glu	p.G62E	ENST00000418115	NM_001664.2	62	gGg/gAg																																													NEWRECORD																																		
ERCC4	2072	MSKCC	GRCh37	16	14041864	14041864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000703-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			521	82	331	0	ENST00000311895.7:c.2411C>A	p.Pro804His	p.P804H	ENST00000311895	NM_005236.2	804	cCc/cAc																																													NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16042434	16042434	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000703-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			565	112	433	0	ENST00000268712.3:c.1240C>T	p.Arg414Ter	p.R414*	ENST00000268712	NM_006311.3	414	Cga/Tga																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70118901	70118902	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0000703-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			386	100	315	0	ENST00000245479.2:c.474_475dupGG	p.Glu159GlyfsTer25	p.E159Gfs*25	ENST00000245479	NM_000346.3	158	gcg/gcGGg																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48584568	48584568	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000703-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			457	87	264	0	ENST00000342988.3:c.741delA	p.Gln248SerfsTer88	p.Q248Sfs*88	ENST00000342988	NM_005359.5	247	ggA/gg																																													NEWRECORD																																		
DNMT3A	1788	MSKCC	GRCh37	2	25457243	25457243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000584-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			721	80	433	0	ENST00000264709.3:c.2644C>T	p.Arg882Cys	p.R882C	ENST00000264709	NM_175629.2	882	Cgc/Tgc																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48028282	48028282	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000584-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			388	408	424	0	ENST00000234420.5:c.3160A>T	p.Ile1054Phe	p.I1054F	ENST00000234420	NM_000179.2	1054	Atc/Ttc																																													NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30713559	30713559	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000584-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			474	105	284	0	ENST00000359013.4:c.959C>G	p.Ser320Ter	p.S320*	ENST00000359013	NM_001024847.2	320	tCa/tGa																																													NEWRECORD																																		
BAP1	8314	MSKCC	GRCh37	3	52443737	52443737	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000584-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			487	87	335	0	ENST00000460680.1:c.60A>T	p.Glu20Asp	p.E20D	ENST00000460680	NM_004656.3	20	gaA/gaT																																													NEWRECORD																																		
KLF4	9314	MSKCC	GRCh37	9	110251308	110251308	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000584-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			590	241	391	0	ENST00000374672.4:c.29T>A	p.Met10Lys	p.M10K	ENST00000374672	NM_004235.4	10	aTg/aAg																																													NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139390806	139390806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000584-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			213	280	391	0	ENST00000277541.6:c.7385C>T	p.Pro2462Leu	p.P2462L	ENST00000277541	NM_017617.3	2462	cCc/cTc																																													NEWRECORD																																		
SUZ12	23512	MSKCC	GRCh37	17	30321025	30321025	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0000584-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			780	44	508	0	ENST00000322652.5:c.1435G>T	p.Val479Phe	p.V479F	ENST00000322652	NM_015355.2	479	Gtt/Ttt																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15302379	15302379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000584-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			853	53	690	0	ENST00000263388.2:c.892C>T	p.His298Tyr	p.H298Y	ENST00000263388	NM_000435.2	298	Cac/Tac																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0000584-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			866	398	554	0	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																													NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32914438	32914438	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs80359550		P-0000584-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			168	392	475	0	ENST00000380152.3:c.5946del	p.Ser1982ArgfsTer22	p.S1982Rfs*22	ENST00000380152		1982	agT/ag																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48584573	48584574	+	missense_variant	Missense_Mutation	DNP	AG	AG	CC			P-0000584-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			354	303	544	0	ENST00000342988.3:c.746_747delAGinsCC	p.Gln249Pro	p.Q249P	ENST00000342988	NM_005359.5	249	cAG/cCC																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89448570	89448570	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001984-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			391	24	931	1	ENST00000336596.2:c.1534C>T	p.Arg512Ter	p.R512*	ENST00000336596	NM_005233.5	512	Cga/Tga																																													NEWRECORD																																		
RAD51B	5890	MSKCC	GRCh37	14	68934928	68934928	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001984-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			206	241	1173	0	ENST00000487270.1:c.997T>C	p.Phe333Leu	p.F333L	ENST00000487270	NM_133509.3	333	Ttt/Ctt																																													NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70118930	70118931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001984-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			613	388	691	1	ENST00000245479.2:c.503dup	p.Asp168GlufsTer84	p.D168Efs*84	ENST00000245479	NM_000346.3	168	gac/gAac																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44928924	44928924	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002243-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			268	48	494	0	ENST00000377967.4:c.2024G>T	p.Gly675Val	p.G675V	ENST00000377967	NM_021140.2	675	gGt/gTt																																													NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76854911	76854911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002243-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			151	55	539	0	ENST00000373344.5:c.5925C>A	p.Asn1975Lys	p.N1975K	ENST00000373344	NM_000489.3	1975	aaC/aaA																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578430	7578431	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0002243-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			110	159	323	0	ENST00000269305.4:c.499_500del	p.Gln167AlafsTer13	p.Q167Afs*13	ENST00000269305	NM_001126112.2	167	CAg/g																																													NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17953374	17953375	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0002243-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			340	73	330	0	ENST00000458235.1:c.610_611dup	p.Leu205AlafsTer2	p.L205Afs*2	ENST00000458235	NM_000215.3	204	ggc/ggGGc																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105748	27105748	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001940-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			420	119	582	0	ENST00000324856.7:c.5359G>T	p.Glu1787Ter	p.E1787*	ENST00000324856	NM_006015.4	1787	Gag/Tag																																													NEWRECORD																																		
MPL	4352	MSKCC	GRCh37	1	43814627	43814627	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001940-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			190	193	562	0	ENST00000372470.3:c.1422G>A	p.Trp474Ter	p.W474*	ENST00000372470	NM_005373.2	474	tgG/tgA																																													NEWRECORD																																		
ERCC3	2071	MSKCC	GRCh37	2	128038139	128038139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001940-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			303	278	730	3	ENST00000285398.2:c.1411G>A	p.Val471Ile	p.V471I	ENST00000285398	NM_000122.1	471	Gtc/Atc																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0001940-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			282	249	580	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001940-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			345	324	711	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112136975	112136975	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0001940-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			435	147	619	0	ENST00000257430.4:c.730-1G>A		p.X244_splice	ENST00000257430	NM_000038.5	244																																														NEWRECORD																																		
PMS2	5395	MSKCC	GRCh37	7	6045549	6045549	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121434629		P-0001940-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			162	186	359	0	ENST00000265849.7:c.137G>T	p.Ser46Ile	p.S46I	ENST00000265849	NM_000535.5	46	aGt/aTt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001940-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			585	187	858	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153332910	153332911	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGG			P-0001940-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			311	310	851	0	ENST00000281708.4:c.45_46insCCT	p.Thr15_Gly16insPro	p.T15_G16insP	ENST00000281708	NM_033632.3	15	-/CCT																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174786	112174787	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0001940-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			506	198	698	0	ENST00000257430.4:c.3498_3499del	p.Tyr1166Ter	p.Y1166*	ENST00000257430	NM_000038.5	1165	aaATat/aaat																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0002239-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			422	31	395	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																													NEWRECORD																																		
RYBP	23429	MSKCC	GRCh37	3	72495716	72495716	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002239-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			937	109	417	0	ENST00000477973.2:c.354G>T	p.Cys119Phe	p.C119F	ENST00000477973	NM_012234.5	119	tGc/tTc																																													NEWRECORD																																		
FAM175A	84142	MSKCC	GRCh37	4	84383746	84383746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002239-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			404	110	503	0	ENST00000321945.7:c.1106G>A	p.Arg369Gln	p.R369Q	ENST00000321945	NM_139076.2	369	cGa/cAa																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56178474	56178474	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002239-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			495	46	448	0	ENST00000399503.3:c.3447T>A	p.Phe1149Leu	p.F1149L	ENST00000399503	NM_005921.1	1149	ttT/ttA																																													NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128843374	128843374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772755154		P-0002239-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			624	255	386	0	ENST00000249373.3:c.481C>T	p.Arg161Trp	p.R161W	ENST00000249373	NM_005631.4	161	Cgg/Tgg																																													NEWRECORD																																		
MEN1	4221	MSKCC	GRCh37	11	64572185	64572185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002239-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			483	28	154	0	ENST00000337652.1:c.1469G>A	p.Arg490Gln	p.R490Q	ENST00000337652	NM_130803.2	490	cGg/cAg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7574035	7574035	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0002239-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			562	146	430	0	ENST00000269305.4:c.994-2A>G		p.X332_splice	ENST00000269305	NM_001126112.2	332																																														NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56160638	56160638	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002239-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			535	34	428	0	ENST00000399503.3:c.914delA	p.Asn305ThrfsTer7	p.N305Tfs*7	ENST00000399503	NM_005921.1	304	acA/ac																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151874668	151874669	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002239-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			598	121	429	0	ENST00000262189.6:c.7869dup	p.Asp2624ArgfsTer33	p.D2624Rfs*33	ENST00000262189	NM_170606.2	2623	-/A																																													NEWRECORD																																		
CDK8	1024	MSKCC	GRCh37	13	26970486	26970486	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002239-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			391	60	430	0	ENST00000381527.3:c.857del	p.Asn286IlefsTer36	p.N286Ifs*36	ENST00000381527	NM_001260.1	285	agA/ag																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000288-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			679	276	121	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000288-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			986	288	165	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27058033	27058033	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000288-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			512	149	97	0	ENST00000324856.7:c.1741C>T	p.Gln581Ter	p.Q581*	ENST00000324856	NM_006015.4	581	Cag/Tag																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65301854	65301854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000288-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			971	242	146	0	ENST00000342505.4:c.3185C>G	p.Ser1062Cys	p.S1062C	ENST00000342505	NM_002227.2	1062	tCt/tGt																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000288-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1033	538	162	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42794527	42794527	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201728833		P-0000288-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1655	555	475	1	ENST00000575354.2:c.1607C>T	p.Ala536Val	p.A536V	ENST00000575354	NM_015125.3	536	gCg/gTg																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56174927	56174928	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0000288-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1473	331	168	0	ENST00000399503.3:c.2087+1dupG		p.S696fs	ENST00000399503	NM_005921.1	696	agc/aGgc																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56181812	56181813	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000288-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1788	1084	275	0	ENST00000399503.3:c.4038dupT	p.Ile1347TyrfsTer2	p.I1347Yfs*2	ENST00000399503	NM_005921.1	1346	gtt/gTtt																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023051	27023051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004486-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			66	33	80	0	ENST00000324856.7:c.157G>A	p.Ala53Thr	p.A53T	ENST00000324856	NM_006015.4	53	Gcc/Acc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0004486-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			341	216	408	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117662475	117662475	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0004486-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			250	386	572	0	ENST00000368508.3:c.4903-1G>C		p.X1635_splice	ENST00000368508	NM_002944.2	1635																																														NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98212167	98212167	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004486-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			873	164	658	0	ENST00000331920.6:c.3505G>C	p.Val1169Leu	p.V1169L	ENST00000331920	NM_000264.3	1169	Gtt/Ctt																																													NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135802688	135802688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004486-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			395	355	386	4	ENST00000298552.3:c.110G>A	p.Arg37His	p.R37H	ENST00000298552	NM_001162426.1	37	cGt/cAt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004486-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			687	289	574	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																													NEWRECORD																																		
DIS3	22894	MSKCC	GRCh37	13	73348123	73348123	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004486-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			1086	405	724	0	ENST00000377767.4:c.1062A>T	p.Arg354Ser	p.R354S	ENST00000377767	NM_014953.3	354	agA/agT																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0004486-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			284	335	712	6	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																													NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48593551	48593551	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0004486-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			405	199	278	0	ENST00000342988.3:c.1302T>A	p.Tyr434Ter	p.Y434*	ENST00000342988	NM_005359.5	434	taT/taA																																													NEWRECORD																																		
CD79A	973	MSKCC	GRCh37	19	42384773	42384773	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782714583		P-0004486-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			612	164	837	1	ENST00000221972.3:c.535G>A	p.Gly179Arg	p.G179R	ENST00000221972	NM_021601.3	179	Ggg/Agg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175789	112175789	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004486-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			465	110	450	0	ENST00000257430.4:c.4501del	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1500	Ttt/tt																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56111402	56111403	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGC			P-0004486-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			349	244	630	0	ENST00000399503.3:c.14_16dup	p.Ala5dup	p.A5dup	ENST00000399503	NM_005921.1	5	atg/atGGCg																																													NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41574341	41574352	+	inframe_deletion	In_Frame_Del	DEL	ACCAGTTCCAGC	ACCAGTTCCAGC	-			P-0004486-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			146	585	759	0	ENST00000263253.7:c.6627_6638delCCAGTTCCAGCA	p.Asn2209_Gln2213delinsLys	p.N2209_Q2213delinsK	ENST00000263253	NM_001429.3	2209	aACCAGTTCCAGCaa/aaa																																													NEWRECORD																																		
EZH2	2146	MSKCC	GRCh37	7	148513804	148513804	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002384-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1327	314	381	0	ENST00000320356.2:c.1477C>G	p.Pro493Ala	p.P493A	ENST00000320356	NM_004456.4	493	Cct/Gct																																													NEWRECORD																																		
CDK8	1024	MSKCC	GRCh37	13	26959417	26959417	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002384-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			776	224	377	1	ENST00000381527.3:c.584T>A	p.Val195Asp	p.V195D	ENST00000381527	NM_001260.1	195	gTt/gAt																																													NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061762	38061762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002384-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			308	238	224	0	ENST00000250448.2:c.227G>A	p.Gly76Asp	p.G76D	ENST00000250448	NM_004496.3	76	gGc/gAc																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579357	7579358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGAAAC			P-0002384-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			505	114	291	0	ENST00000269305.4:c.323_329dup	p.Leu111PhefsTer40	p.L111Ffs*40	ENST00000269305	NM_001126112.2	110	cgt/cgGTTTCCGt																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0000988-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			393	530	245	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000988-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			209	40	178	0	ENST00000269305.4:c.517G>C	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ctg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0000988-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			199	44	186	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																													NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47162515	47162515	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000988-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			509	44	330	0	ENST00000409792.3:c.3611T>G	p.Ile1204Ser	p.I1204S	ENST00000409792	NM_014159.6	1204	aTt/aGt																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8100664	8100664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000988-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			433	105	528	0	ENST00000346208.3:c.638C>T	p.Ser213Leu	p.S213L	ENST00000346208		213	tCg/tTg																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0000988-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			217	158	260	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																														NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5214594	5214594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000988-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			401	69	383	1	ENST00000357368.4:c.4472C>T	p.Thr1491Met	p.T1491M	ENST00000357368	NM_002850.3	1491	aCg/aTg																																													NEWRECORD																																		
ERCC2	2068	MSKCC	GRCh37	19	45860581	45860581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000988-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			610	69	398	0	ENST00000391945.4:c.1426G>A	p.Val476Ile	p.V476I	ENST00000391945	NM_000400.3	476	Gtc/Atc																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128193	112128194	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGCTTTTACAGTCCCAAG			P-0000988-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			537	29	238	0	ENST00000257430.4:c.699_717dup	p.Thr240AlafsTer18	p.T240Afs*18	ENST00000257430	NM_000038.5	232	-/CAGCTTTTACAGTCCCAAG																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001428-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			257	444	367	0	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag																																													NEWRECORD																																		
MUTYH	4595	MSKCC	GRCh37	1	45797210	45797210	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001428-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			861	53	280	0	ENST00000372115.3:c.1163G>C	p.Trp388Ser	p.W388S	ENST00000372115	NM_001048171.1	388	tGg/tCg																																													NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89391087	89391087	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001428-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			723	122	324	0	ENST00000336596.2:c.1153C>T	p.Arg385Ter	p.R385*	ENST00000336596	NM_005233.5	385	Cga/Tga																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187627767	187627767	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001428-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			406	289	492	0	ENST00000441802.2:c.3215C>A	p.Ser1072Tyr	p.S1072Y	ENST00000441802	NM_005245.3	1072	tCc/tAc																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187630730	187630730	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001428-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			732	63	619	0	ENST00000441802.2:c.252A>T	p.Lys84Asn	p.K84N	ENST00000441802	NM_005245.3	84	aaA/aaT																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0001428-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			302	156	186	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																													NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117687257	117687257	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001428-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			627	91	281	0	ENST00000368508.3:c.2794T>C	p.Ser932Pro	p.S932P	ENST00000368508	NM_002944.2	932	Tcc/Ccc																																													NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108115649	108115649	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001428-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			566	424	314	1	ENST00000278616.4:c.797G>T	p.Trp266Leu	p.W266L	ENST00000278616	NM_000051.3	266	tGg/tTg																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37884026	37884026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001428-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			683	564	474	0	ENST00000269571.5:c.3497C>T	p.Thr1166Ile	p.T1166I	ENST00000269571		1166	aCt/aTt																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15276765	15276765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001428-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			506	145	288	1	ENST00000263388.2:c.5500C>T	p.Arg1834Trp	p.R1834W	ENST00000263388	NM_000435.2	1834	Cgg/Tgg																																													NEWRECORD																																		
FOXP1	27086	MSKCC	GRCh37	3	71090508	71090509	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0001428-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			912	114	245	0	ENST00000318789.4:c.838_839dup	p.Gln280HisfsTer46	p.Q280Hfs*46	ENST00000318789	NM_032682.5	280	cag/caCAg																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175746	112175746	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001428-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			314	94	222	0	ENST00000257430.4:c.4455del	p.Asp1486IlefsTer21	p.D1486Ifs*21	ENST00000257430	NM_000038.5	1485	gcT/gc																																													NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187630697	187630701	+	missense_variant	Missense_Mutation	ONP	AAAGC	AAAGC	CAAGG			P-0001428-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			736	61	579	0	ENST00000441802.2:c.281_285delinsCCTTG	p.Cys94_Phe95delinsSerLeu	p.C94_F95delinsSL	ENST00000441802	NM_005245.3	94	tGCTTT/tCCTTG																																													NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0002696-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			823	163	552	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																													NEWRECORD																																		
BCL6	604	MSKCC	GRCh37	3	187447525	187447525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002696-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			603	70	355	0	ENST00000232014.4:c.668C>T	p.Pro223Leu	p.P223L	ENST00000232014	NM_001130845.1	223	cCc/cTc																																													NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189582120	189582120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002696-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			824	77	462	0	ENST00000264731.3:c.679G>A	p.Ala227Thr	p.A227T	ENST00000264731	NM_003722.4	227	Gcc/Acc																																													NEWRECORD																																		
MLL3	58508	MSKCC	GRCh37	7	151864316	151864316	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002696-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1005	78	638	0	ENST00000262189.6:c.9665C>G	p.Ala3222Gly	p.A3222G	ENST00000262189	NM_170606.2	3222	gCt/gGt																																													NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68835664	68835665	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002696-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			969	98	564	0	ENST00000261769.5:c.259dup	p.Arg87LysfsTer7	p.R87Kfs*7	ENST00000261769	NM_004360.3	85	-/A																																													NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142183963	142183963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			293	259	405	0	ENST00000350721.4:c.7017G>A	p.Met2339Ile	p.M2339I	ENST00000350721	NM_001184.3	2339	atG/atA																																													NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32190399	32190399	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			291	110	229	0	ENST00000375023.3:c.340T>C	p.Cys114Arg	p.C114R	ENST00000375023	NM_004557.3	114	Tgc/Cgc																																													NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95590934	95590934	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			357	120	276	0	ENST00000343455.3:c.975G>C	p.Met325Ile	p.M325I	ENST00000343455	NM_177438.2	325	atG/atC																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			72	410	375	0	ENST00000269305.4:c.1009C>G	p.Arg337Gly	p.R337G	ENST00000269305	NM_001126112.2	337	Cgc/Ggc																																													NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42793381	42793381	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			145	83	245	0	ENST00000575354.2:c.1183T>G	p.Tyr395Asp	p.Y395D	ENST00000575354	NM_015125.3	395	Tat/Gat																																													NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44929397	44929397	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs111842628		P-0000571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			95	332	377	0	ENST00000377967.4:c.2497A>G	p.Thr833Ala	p.T833A	ENST00000377967	NM_021140.2	833	Act/Gct																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACCCCC			P-0000571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			681	616	209	0	ENST00000275493.2:c.2311_2319dup	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	gac/gACAACCCCCac																																													NEWRECORD																																		
SPEN	23013	MSKCC	GRCh37	1	16237625	16237625	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001508-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			487	164	299	0	ENST00000375759.3:c.1072G>T	p.Glu358Ter	p.E358*	ENST00000375759	NM_015001.2	358	Gaa/Taa																																													NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001508-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			362	132	271	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																													NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67116134	67116134	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001508-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			301	169	341	0	ENST00000412916.2:c.418C>T	p.Gln140Ter	p.Q140*	ENST00000412916		140	Caa/Taa																																													NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8111543	8111544	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001508-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			507	514	379	0	ENST00000346208.3:c.1030dupT	p.Tyr344LeufsTer8	p.Y344Lfs*8	ENST00000346208		343	-/T																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000081-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			734	259	873	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																													NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46123837	46123837	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0000081-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1127	93	1382	2	ENST00000334344.6:c.103A>T	p.Lys35Ter	p.K35*	ENST00000334344	NM_152641.2	35	Aaa/Taa																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56178400	56178401	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0000081-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			829	320	930	0	ENST00000399503.3:c.3373_3374insGT	p.Asn1125SerfsTer24	p.N1125Sfs*24	ENST00000399503	NM_005921.1	1125	aat/aGTat																																													NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56183240	56183241	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000081-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			560	183	674	0	ENST00000399503.3:c.4151dupT	p.Arg1385LysfsTer35	p.R1385Kfs*35	ENST00000399503	NM_005921.1	1384	cta/cTta																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157100396	157100397	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGC			P-0000081-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			104	80	253	2	ENST00000346085.5:c.1348_1350dupCCG	p.Pro450dup	p.P450dup	ENST00000346085	NM_020732.3	450	gcg/gCGCcg																																													NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372258	55372259	+	inframe_insertion	In_Frame_Ins	INS	-	-	CACCAG	rs564144826		P-0000081-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			386	105	388	0	ENST00000297316.4:c.972_977dup	p.Gln324_His325dup	p.Q324_H325dup	ENST00000297316	NM_022454.3	324	-/CACCAG																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000168-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			233	25	148	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																													NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52682459	52682459	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0000168-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1244	73	659	0	ENST00000394830.3:c.715-1G>C		p.X239_splice	ENST00000394830	NM_018313.4	239																																														NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249393	153249393	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000168-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			505	37	318	0	ENST00000281708.4:c.1385C>A	p.Ser462Tyr	p.S462Y	ENST00000281708	NM_033632.3	462	tCc/tAc																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153247186	153247186	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001813-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			595	201	435	0	ENST00000281708.4:c.1616G>T	p.Gly539Val	p.G539V	ENST00000281708	NM_033632.3	539	gGg/gTg						NEWRECORD																																																																									
NTRK2	4915	MSKCC	GRCh37	9	87325695	87325695	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001813-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			383	115	359	0	ENST00000277120.3:c.572T>C	p.Ile191Thr	p.I191T	ENST00000277120		191	aTa/aCa						NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118363799	118363799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001813-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			392	110	282	0	ENST00000534358.1:c.5032G>A	p.Glu1678Lys	p.E1678K	ENST00000534358	NM_005933.3	1678	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs878854073		P-0001813-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			156	70	199	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225							NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187628638	187628638	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001813-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			554	151	502	0	ENST00000441802.2:c.2344delC	p.Arg782ValfsTer9	p.R782Vfs*9	ENST00000441802	NM_005245.3	782	Cgt/gt						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116412039	116412050	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAAGGTATATT	AGAAGGTATATT	-			P-0001813-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			231	139	237	0	ENST00000397752.3:c.3024_3028+7delAGAAGGTATATT		p.X1008_splice	ENST00000397752	NM_000245.2	1008							NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29548938	29548938	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001813-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			173	31	158	0	ENST00000358273.4:c.1714delG	p.Glu572ArgfsTer14	p.E572Rfs*14	ENST00000358273	NM_001042492.2	571	tGg/tg						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32914592	32914592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003124-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			739	750	974	5	ENST00000380152.3:c.6100C>T	p.Arg2034Cys	p.R2034C	ENST00000380152		2034	Cgt/Tgt						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0003124-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			420	183	697	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0003124-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			185	240	501	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA						NEWRECORD																																																																									
MUTYH	4595	MSKCC	GRCh37	1	45797480	45797480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003124-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			411	158	593	0	ENST00000372115.3:c.997G>A	p.Glu333Lys	p.E333K	ENST00000372115	NM_001048171.1	333	Gag/Aag						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226564979	226564979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003124-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			280	323	750	1	ENST00000366794.5:c.1771C>T	p.Arg591Cys	p.R591C	ENST00000366794	NM_001618.3	591	Cgt/Tgt						NEWRECORD																																																																									
RAF1	5894	MSKCC	GRCh37	3	12660079	12660079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003124-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			327	375	836	0	ENST00000251849.4:c.142C>T	p.Leu48Phe	p.L48F	ENST00000251849	NM_002880.3	48	Ctc/Ttc						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134514504	134514504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003124-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			411	140	642	0	ENST00000398015.3:c.31C>A	p.Leu11Met	p.L11M	ENST00000398015	NM_004441.4	11	Ctg/Atg						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30672177	30672177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003124-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			314	262	611	0	ENST00000376406.3:c.4783C>T	p.Arg1595Trp	p.R1595W	ENST00000376406	NM_014641.2	1595	Cgg/Tgg						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8486232	8486232	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142397137		P-0003124-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			218	294	704	2	ENST00000356435.5:c.2585G>A	p.Arg862His	p.R862H	ENST00000356435		862	cGc/cAc						NEWRECORD																																																																									
AURKB	9212	MSKCC	GRCh37	17	8110926	8110926	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003124-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			518	114	802	2	ENST00000585124.1:c.169G>C	p.Val57Leu	p.V57L	ENST00000585124	NM_004217.3	57	Gtg/Ctg						NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604786	48604789	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0003124-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			209	159	768	0	ENST00000342988.3:c.1608_1611del	p.Asp537LysfsTer14	p.D537Kfs*14	ENST00000342988	NM_005359.5	536	ctAGAC/ct						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003124-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			182	270	591	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc						NEWRECORD																																																																									
DNMT3A	1788	MSKCC	GRCh37	2	25464450	25464450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002115-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			459	39	412	5	ENST00000264709.3:c.2063G>A	p.Arg688His	p.R688H	ENST00000264709	NM_175629.2	688	cGc/cAc						NEWRECORD																																																																									
AXL	558	MSKCC	GRCh37	19	41765541	41765541	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002115-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			620	74	538	0	ENST00000301178.4:c.2417C>G	p.Thr806Arg	p.T806R	ENST00000301178	NM_021913.4	806	aCa/aGa						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0000547-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			139	89	144	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0000547-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			960	93	853	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29416493	29416493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000547-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			482	247	573	0	ENST00000389048.3:c.4460C>T	p.Ser1487Leu	p.S1487L	ENST00000389048	NM_004304.4	1487	tCg/tTg						NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38946585	38946585	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000547-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			579	42	335	0	ENST00000357387.3:c.4384G>C	p.Ala1462Pro	p.A1462P	ENST00000357387	NM_152756.3	1462	Gcc/Ccc						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061231	38061231	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000547-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			551	305	551	0	ENST00000250448.2:c.758T>A	p.Met253Lys	p.M253K	ENST00000250448	NM_004496.3	253	aTg/aAg						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68862076	68862076	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0000547-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			201	169	445	0	ENST00000261769.5:c.2165-1G>T		p.X722_splice	ENST00000261769	NM_004360.3	722							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009406-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			358	167	266	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185181413	185181413	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009406-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			583	94	369	0	ENST00000265026.3:c.1354G>C	p.Glu452Gln	p.E452Q	ENST00000265026	NM_004721.4	452	Gaa/Caa						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185181440	185181440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009406-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			494	82	300	0	ENST00000265026.3:c.1381G>C	p.Glu461Gln	p.E461Q	ENST00000265026	NM_004721.4	461	Gag/Cag						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151874919	151874919	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009406-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			423	193	413	0	ENST00000262189.6:c.7619A>T	p.His2540Leu	p.H2540L	ENST00000262189	NM_170606.2	2540	cAt/cTt						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70405802	70405802	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009406-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			334	80	284	0	ENST00000373644.4:c.3316A>G	p.Ser1106Gly	p.S1106G	ENST00000373644	NM_030625.2	1106	Agc/Ggc						NEWRECORD																																																																									
YAP1	10413	MSKCC	GRCh37	11	102056760	102056760	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009406-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			284	101	396	0	ENST00000282441.5:c.700G>C	p.Asp234His	p.D234H	ENST00000282441	NM_001130145.2	234	Gat/Cat						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108188181	108188181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009406-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			477	111	353	0	ENST00000278616.4:c.6280G>A	p.Glu2094Lys	p.E2094K	ENST00000278616	NM_000051.3	2094	Gaa/Aaa						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108188190	108188190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009406-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			454	105	347	0	ENST00000278616.4:c.6289G>A	p.Glu2097Lys	p.E2097K	ENST00000278616	NM_000051.3	2097	Gaa/Aaa						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48923137	48923137	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009406-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			371	83	368	0	ENST00000267163.4:c.585G>A	p.Trp195Ter	p.W195*	ENST00000267163	NM_000321.2	195	tgG/tgA						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0009406-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			519	152	591	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151874913	151874913	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009406-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			417	193	404	0	ENST00000262189.6:c.7625delC	p.Ser2542TyrfsTer20	p.S2542Yfs*20	ENST00000262189	NM_170606.2	2542	tCa/ta						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0000395-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			658	260	349	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000395-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1254	327	661	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag						NEWRECORD																																																																									
EPHA3	2042	MSKCC	GRCh37	3	89391236	89391236	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000395-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			376	52	158	0	ENST00000336596.2:c.1302G>T	p.Gln434His	p.Q434H	ENST00000336596	NM_005233.5	434	caG/caT						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178937437	178937437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000395-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			517	58	254	1	ENST00000263967.3:c.1825C>T	p.Pro609Ser	p.P609S	ENST00000263967	NM_006218.2	609	Cct/Tct						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153245455	153245455	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000395-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			820	371	478	0	ENST00000281708.4:c.1736G>T	p.Gly579Val	p.G579V	ENST00000281708	NM_033632.3	579	gGg/gTg						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187629504	187629504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000395-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			682	408	566	0	ENST00000441802.2:c.1478G>T	p.Gly493Val	p.G493V	ENST00000441802	NM_005245.3	493	gGt/gTt						NEWRECORD																																																																									
HIST1H3A	8350	MSKCC	GRCh37	6	26021096	26021096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000395-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			492	37	150	0	ENST00000357647.3:c.379C>T	p.Leu127Phe	p.L127F	ENST00000357647	NM_003529.2	127	Ctc/Ttc						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10610415	10610415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000395-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			551	395	521	0	ENST00000171111.5:c.295G>A	p.Val99Met	p.V99M	ENST00000171111	NM_203500.1	99	Gtg/Atg						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151877181	151877181	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000966-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			186	52	339	0	ENST00000262189.6:c.7180C>T	p.Gln2394Ter	p.Q2394*	ENST00000262189	NM_170606.2	2394	Cag/Tag						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31022613	31022619	+	frameshift_variant	Frame_Shift_Del	DEL	TATCCTC	TATCCTC	-			P-0000966-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			214	60	832	0	ENST00000375687.4:c.2100_2106del	p.Tyr700Ter	p.Y700*	ENST00000375687	NM_015338.5	700	TATCCTCta/ta						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			165	160	621	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0001441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			336	137	465	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			193	120	543	0	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11298603	11298603	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			101	153	339	0	ENST00000361445.4:c.1858A>G	p.Met620Val	p.M620V	ENST00000361445	NM_004958.3	620	Atg/Gtg						NEWRECORD																																																																									
AKT3	10000	MSKCC	GRCh37	1	243736277	243736277	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			833	150	709	0	ENST00000263826.5:c.770C>G	p.Ser257Cys	p.S257C	ENST00000263826	NM_005465.4	257	tCt/tGt						NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52637729	52637729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			455	207	635	0	ENST00000394830.3:c.2587G>A	p.Glu863Lys	p.E863K	ENST00000394830	NM_018313.4	863	Gaa/Aaa						NEWRECORD																																																																									
RYBP	23429	MSKCC	GRCh37	3	72428469	72428469	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			578	258	881	0	ENST00000477973.2:c.533G>C	p.Glu179Gln	p.E179Q	ENST00000477973	NM_012234.5	179	Gag/Cag						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150001110	150001110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			407	58	699	0	ENST00000253339.5:c.2494G>A	p.Asp832Asn	p.D832N	ENST00000253339		832	Gat/Aat						NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	150001124	150001124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			420	53	689	0	ENST00000253339.5:c.2480G>T	p.Arg827Ile	p.R827I	ENST00000253339		827	aGa/aTa						NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50455076	50455076	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			361	137	688	1	ENST00000331340.3:c.623G>T	p.Arg208Leu	p.R208L	ENST00000331340	NM_006060.4	208	cGa/cTa						NEWRECORD																																																																									
EZH2	2146	MSKCC	GRCh37	7	148507497	148507497	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			412	187	604	0	ENST00000320356.2:c.1957C>G	p.Gln653Glu	p.Q653E	ENST00000320356	NM_004456.4	653	Caa/Gaa						NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55372430	55372430	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			298	116	553	0	ENST00000297316.4:c.1120G>C	p.Glu374Gln	p.E374Q	ENST00000297316	NM_022454.3	374	Gag/Cag						NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48939065	48939065	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			545	230	994	0	ENST00000267163.4:c.897T>A	p.Phe299Leu	p.F299L	ENST00000267163	NM_000321.2	299	ttT/ttA						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	343702	343702	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			243	94	512	0	ENST00000262320.3:c.1972A>G	p.Lys658Glu	p.K658E	ENST00000262320	NM_003502.3	658	Aag/Gag						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37879609	37879609	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			253	51	389	0	ENST00000269571.5:c.1984C>G	p.Leu662Val	p.L662V	ENST00000269571		662	Ctg/Gtg						NEWRECORD																																																																									
MLL2	8085	MSKCC	GRCh37	12	49421645	49421645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			503	364	635	0	ENST00000301067.7:c.14584G>A	p.Ala4862Thr	p.A4862T	ENST00000301067	NM_003482.3	4862	Gca/Aca						NEWRECORD																																																																									
AXL	558	MSKCC	GRCh37	19	41727821	41727821	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			465	302	741	0	ENST00000301178.4:c.446C>A	p.Thr149Asn	p.T149N	ENST00000301178	NM_021913.4	149	aCt/aAt						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			69	406	372	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc						NEWRECORD																																																																									
SPEN	23013	MSKCC	GRCh37	1	16256699	16256727	+	frameshift_variant	Frame_Shift_Del	DEL	GATATGGCCAAAATAAAACTATCTGTCTT	GATATGGCCAAAATAAAACTATCTGTCTT	-			P-0000441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			193	85	417	0	ENST00000375759.3:c.3966_3994delTATGGCCAAAATAAAACTATCTGTCTTGA	p.Asp1322GlufsTer3	p.D1322Efs*3	ENST00000375759	NM_015001.2	1322	GATATGGCCAAAATAAAACTATCTGTCTTg/g						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32929073	32929073	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			482	373	589	0	ENST00000380152.3:c.7085delT	p.Leu2362CysfsTer5	p.L2362Cfs*5	ENST00000380152		2361	caT/ca						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	396209	396234	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGCAGCTTCTGAGGGAGTCTTCCG	GGAGCAGCTTCTGAGGGAGTCTTCCG	-			P-0000441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			855	75	474	0	ENST00000262320.3:c.792_817delCGGAAGACTCCCTCAGAAGCTGCTCC	p.Arg266AspfsTer10	p.R266Dfs*10	ENST00000262320	NM_003502.3	264	ccCGGAAGACTCCCTCAGAAGCTGCTCCtg/cctg						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55961079	55961079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000590-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			442	367	351	0	ENST00000263923.4:c.2861C>T	p.Ala954Val	p.A954V	ENST00000263923	NM_002253.2	954	gCa/gTa						NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55979494	55979494	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000590-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			413	391	247	0	ENST00000263923.4:c.953A>T	p.Asn318Ile	p.N318I	ENST00000263923	NM_002253.2	318	aAc/aTc						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8115701	8115701	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C	rs112417755		P-0000590-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			479	161	165	0	ENST00000346208.3:c.1048-1G>C		p.X350_splice	ENST00000346208		350							NEWRECORD																																																																									
MLL	4297	MSKCC	GRCh37	11	118342640	118342640	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000590-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			258	135	196	0	ENST00000534358.1:c.766A>G	p.Ile256Val	p.I256V	ENST00000534358	NM_005933.3	256	Att/Gtt						NEWRECORD																																																																									
AXL	558	MSKCC	GRCh37	19	41726735	41726735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000260-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			264	40	272	0	ENST00000301178.4:c.280G>A	p.Asp94Asn	p.D94N	ENST00000301178	NM_021913.4	94	Gat/Aat						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0002530-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			579	934	341	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc						NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29541244	29541244	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002530-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			482	117	319	0	ENST00000389048.3:c.1573G>T	p.Asp525Tyr	p.D525Y	ENST00000389048	NM_004304.4	525	Gat/Tat						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68772286	68772286	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002530-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			255	239	390	0	ENST00000261769.5:c.136del	p.Leu46TrpfsTer10	p.L46Wfs*10	ENST00000261769	NM_004360.3	45	caC/ca						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106509447	106509447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001558-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			397	53	456	0	ENST00000359195.3:c.1441G>A	p.Val481Ile	p.V481I	ENST00000359195	NM_002649.2	481	Gtc/Atc						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98239082	98239082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001558-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			253	19	468	0	ENST00000331920.6:c.1561G>A	p.Ala521Thr	p.A521T	ENST00000331920	NM_000264.3	521	Gcc/Acc						NEWRECORD																																																																									
MTOR	2475	MSKCC	GRCh37	1	11319454	11319454	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			306	54	446	0	ENST00000361445.4:c.13G>T	p.Gly5Ter	p.G5*	ENST00000361445	NM_004958.3	5	Gga/Tga						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27101469	27101469	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			191	154	521	0	ENST00000324856.7:c.4751A>T	p.Gln1584Leu	p.Q1584L	ENST00000324856	NM_006015.4	1584	cAg/cTg						NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176696790	176696790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			222	175	345	0	ENST00000439151.2:c.5491G>A	p.Asp1831Asn	p.D1831N	ENST00000439151	NM_022455.4	1831	Gat/Aat						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30671529	30671529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			443	81	611	0	ENST00000376406.3:c.5431C>T	p.Arg1811Cys	p.R1811C	ENST00000376406	NM_014641.2	1811	Cgc/Tgc						NEWRECORD																																																																									
MDC1	9656	MSKCC	GRCh37	6	30673631	30673631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			412	160	620	0	ENST00000376406.3:c.3329G>T	p.Arg1110Leu	p.R1110L	ENST00000376406	NM_014641.2	1110	cGg/cTg						NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157528865	157528865	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			200	206	415	0	ENST00000346085.5:c.6590G>T	p.Arg2197Met	p.R2197M	ENST00000346085	NM_020732.3	2197	aGg/aTg						NEWRECORD																																																																									
ETV1	2115	MSKCC	GRCh37	7	13978832	13978832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			585	322	486	2	ENST00000405192.2:c.275C>T	p.Pro92Leu	p.P92L	ENST00000405192	NM_001163147.1	92	cCc/cTc						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8340409	8340409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			176	114	536	0	ENST00000356435.5:c.5187G>T	p.Trp1729Cys	p.W1729C	ENST00000356435		1729	tgG/tgT						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8517931	8517931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			223	145	578	0	ENST00000356435.5:c.1460C>T	p.Thr487Ile	p.T487I	ENST00000356435		487	aCa/aTa						NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8100272	8100272	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			281	120	446	0	ENST00000346208.3:c.246C>A	p.Ser82Arg	p.S82R	ENST00000346208		82	agC/agA						NEWRECORD																																																																									
CDK8	1024	MSKCC	GRCh37	13	26911735	26911735	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			215	429	431	0	ENST00000381527.3:c.160A>G	p.Ile54Val	p.I54V	ENST00000381527	NM_001260.1	54	Ata/Gta						NEWRECORD																																																																									
FLT3	2322	MSKCC	GRCh37	13	28626691	28626691	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			155	211	460	0	ENST00000241453.7:c.605A>T	p.Gln202Leu	p.Q202L	ENST00000241453	NM_004119.2	202	cAg/cTg						NEWRECORD																																																																									
RAD51B	5890	MSKCC	GRCh37	14	68290264	68290264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			520	140	484	0	ENST00000487270.1:c.4G>T	p.Gly2Cys	p.G2C	ENST00000487270	NM_133509.3	2	Ggt/Tgt						NEWRECORD																																																																									
TSHR	7253	MSKCC	GRCh37	14	81609863	81609863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			258	66	522	0	ENST00000298171.2:c.1461C>A	p.Asp487Glu	p.D487E	ENST00000298171	NM_000369.2	487	gaC/gaA						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3900791	3900791	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			124	113	369	1	ENST00000262367.5:c.305A>G	p.Gln102Arg	p.Q102R	ENST00000262367	NM_004380.2	102	cAg/cGg						NEWRECORD																																																																									
RAD51D	5892	MSKCC	GRCh37	17	33428333	33428333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			313	72	578	0	ENST00000335858.7:c.454C>T	p.Leu152Phe	p.L152F	ENST00000335858	NM_133629.2	152	Ctc/Ttc						NEWRECORD																																																																									
RAD51C	5889	MSKCC	GRCh37	17	56780611	56780611	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			388	222	559	0	ENST00000337432.4:c.626A>G	p.Tyr209Cys	p.Y209C	ENST00000337432	NM_058216.2	209	tAt/tGt						NEWRECORD																																																																									
PMAIP1	5366	MSKCC	GRCh37	18	57569902	57569902	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			261	366	391	0	ENST00000316660.6:c.82C>T	p.Gln28Ter	p.Q28*	ENST00000316660	NM_021127.2	28	Caa/Taa						NEWRECORD																																																																									
PARK2	5071	MSKCC	GRCh37	6	162683677	162683677	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			293	35	515	0	ENST00000366898.1:c.292del	p.Glu98SerfsTer5	p.E98Sfs*5	ENST00000366898	NM_004562.2	98	Gag/ag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579521	7579521	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			82	131	503	0	ENST00000269305.4:c.166delG	p.Glu56LysfsTer67	p.E56Kfs*67	ENST00000269305	NM_001126112.2	56	Gaa/aa						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266104	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			409	195	472	1	ENST00000349496.5:c.100_101delinsTT	p.Gly34Leu	p.G34L	ENST00000349496	NM_001904.3	34	GGa/TTa						NEWRECORD																																																																									
MYCN	4613	MSKCC	GRCh37	2	16085823	16085824	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			183	83	489	0	ENST00000281043.3:c.999_1000delinsT	p.Ala334ProfsTer17	p.A334Pfs*17	ENST00000281043	NM_005378.4	333	gcCGcc/gcTcc						NEWRECORD																																																																									
DDR2	4921	MSKCC	GRCh37	1	162746086	162746086	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002806-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			768	147	474	0	ENST00000367921.3:c.2209A>T	p.Ser737Cys	p.S737C	ENST00000367921	NM_006182.2	737	Agt/Tgt						NEWRECORD																																																																									
SH2D1A	4068	MSKCC	GRCh37	X	123499643	123499645	+	missense_variant	Missense_Mutation	ONP	CCC	CCC	ACA			P-0002806-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			147	79	273	0	ENST00000371139.4:c.170_172delinsACA	p.Ser57_Gln58delinsTyrLys	p.S57_Q58delinsYK	ENST00000371139	NM_001114937.2	57	tCCCag/tACAag						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207102	1207102	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002806-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			606	126	394	0	ENST00000326873.7:c.191del	p.Lys64ArgfsTer32	p.K64Rfs*32	ENST00000326873	NM_000455.4	64	Aag/ag						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380279	25380282	+	missense_variant	Missense_Mutation	ONP	CCTG	CCTG	ACTC			P-0002806-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			618	127	479	0	ENST00000256078.4:c.176_179delinsGAGT	p.Ala59_Gly60delinsGlyVal	p.A59_G60delinsGV	ENST00000256078	NM_033360.2	59	gCAGGt/gGAGTt						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000661-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			75	14	62	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0000661-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			296	10	467	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga						NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246436	105246436	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000661-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			159	116	388	0	ENST00000349310.3:c.164T>A	p.Phe55Tyr	p.F55Y	ENST00000349310	NM_001014432.1	55	tTc/tAc						NEWRECORD																																																																									
NOTCH2	4853	MSKCC	GRCh37	1	120458750	120458751	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0000661-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			101	19	144	0	ENST00000256646.2:c.6594_6595delAC	p.Leu2199IlefsTer4	p.L2199Ifs*4	ENST00000256646	NM_024408.3	2198	gcACta/gcta						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180047995	180047995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000955-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			291	139	429	0	ENST00000261937.6:c.2180C>T	p.Ala727Val	p.A727V	ENST00000261937	NM_182925.4	727	gCg/gTg						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0000955-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			171	319	580	1	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68844246	68844246	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0000955-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			100	150	270	0	ENST00000261769.5:c.832+2T>C		p.X278_splice	ENST00000261769	NM_004360.3	278							NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17950292	17950292	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000955-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			327	66	352	0	ENST00000458235.1:c.1435C>A	p.Pro479Thr	p.P479T	ENST00000458235	NM_000215.3	479	Ccc/Acc						NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52725470	52725470	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000955-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			407	71	424	0	ENST00000322088.6:c.1637A>T	p.Lys546Met	p.K546M	ENST00000322088	NM_014225.5	546	aAg/aTg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001568-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			446	19	182	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag						NEWRECORD																																																																									
IDH1	3417	MSKCC	GRCh37	2	209113272	209113272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001568-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1078	84	403	0	ENST00000345146.2:c.235G>A	p.Asp79Asn	p.D79N	ENST00000345146	NM_005896.2	79	Gat/Aat						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180057595	180057595	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001568-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			854	54	443	0	ENST00000261937.6:c.360C>G	p.Ile120Met	p.I120M	ENST00000261937	NM_182925.4	120	atC/atG						NEWRECORD																																																																									
E2F3	1871	MSKCC	GRCh37	6	20402737	20402737	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001568-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			703	38	246	0	ENST00000346618.3:c.274G>C	p.Glu92Gln	p.E92Q	ENST00000346618	NM_001949.4	92	Gag/Cag						NEWRECORD																																																																									
IFNGR1	3459	MSKCC	GRCh37	6	137519599	137519599	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001568-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1133	85	410	0	ENST00000367739.4:c.1039G>C	p.Glu347Gln	p.E347Q	ENST00000367739	NM_000416.2	347	Gaa/Caa						NEWRECORD																																																																									
RECQL4	9401	MSKCC	GRCh37	8	145741836	145741836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001568-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1469	84	416	0	ENST00000428558.2:c.667G>A	p.Gly223Ser	p.G223S	ENST00000428558	NM_004260.3	223	Ggt/Agt						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108190766	108190766	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001568-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			732	46	295	0	ENST00000278616.4:c.6433G>T	p.Glu2145Ter	p.E2145*	ENST00000278616	NM_000051.3	2145	Gaa/Taa						NEWRECORD																																																																									
CDK8	1024	MSKCC	GRCh37	13	26974662	26974662	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001568-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			725	117	384	0	ENST00000381527.3:c.1006T>G	p.Leu336Val	p.L336V	ENST00000381527	NM_001260.1	336	Tta/Gta						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110436290	110436290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001568-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			187	52	74	0	ENST00000375856.3:c.2111C>T	p.Ser704Phe	p.S704F	ENST00000375856	NM_003749.2	704	tCt/tTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0001568-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			418	163	246	0	ENST00000269305.4:c.376-1G>T		p.X126_splice	ENST00000269305	NM_001126112.2	126							NEWRECORD																																																																									
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0001078-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			382	161	470	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001078-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			300	93	339	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc						NEWRECORD																																																																									
YAP1	10413	MSKCC	GRCh37	11	102098302	102098302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001078-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			474	168	452	0	ENST00000282441.5:c.1266G>T	p.Glu422Asp	p.E422D	ENST00000282441	NM_001130145.2	422	gaG/gaT						NEWRECORD																																																																									
CBFB	865	MSKCC	GRCh37	16	67100658	67100658	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001078-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			487	192	551	0	ENST00000412916.2:c.356T>A	p.Leu119Gln	p.L119Q	ENST00000412916		119	cTg/cAg						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68844181	68844184	+	missense_variant	Missense_Mutation	ONP	GACA	GACA	AATG			P-0001078-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			299	178	503	0	ENST00000261769.5:c.769_772delinsAATG	p.Asp257_Asn258delinsAsnAsp	p.D257_N258delinsND	ENST00000261769	NM_004360.3	257	GACAac/AATGac						NEWRECORD																																																																									
ALOX12B	242	MSKCC	GRCh37	17	7980313	7980313	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003971-T02-IM5									Unknown	UNKNOWN				MSK-IMPACT			68	11	131	0	ENST00000319144.4:c.1270T>C	p.Tyr424His	p.Y424H	ENST00000319144	NM_001139.2	424	Tac/Cac						NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67593284	67593299	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGCTATGGCTTTGC	CTGGCTATGGCTTTGC	-			P-0003971-T02-IM5									Unknown	UNKNOWN				MSK-IMPACT			127	20	367	0	ENST00000274335.5:c.2031_2046del	p.Gly678SerfsTer9	p.G678Sfs*9	ENST00000274335		677	aCTGGCTATGGCTTTGCc/ac						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692922	89692922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000805-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			465	165	279	0	ENST00000371953.3:c.406T>C	p.Cys136Arg	p.C136R	ENST00000371953	NM_000314.4	136	Tgt/Cgt						NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39932980	39932980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000806-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			559	149	378	0	ENST00000378444.4:c.1619G>A	p.Arg540Gln	p.R540Q	ENST00000378444	NM_001123385.1	540	cGg/cAg						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52440855	52440855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000806-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			293	77	239	0	ENST00000460680.1:c.649G>A	p.Ala217Thr	p.A217T	ENST00000460680	NM_004656.3	217	Gcc/Acc						NEWRECORD																																																																									
SMARCB1	6598	MSKCC	GRCh37	22	24159041	24159041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000806-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			350	62	164	0	ENST00000263121.7:c.713C>A	p.Ala238Asp	p.A238D	ENST00000263121	NM_003073.3	238	gCc/gAc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002591-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			469	296	289	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
FGFR1	2260	MSKCC	GRCh37	8	38287415	38287415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002591-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			475	357	231	0	ENST00000425967.3:c.242G>A	p.Gly81Asp	p.G81D	ENST00000425967	NM_001174067.1	81	gGt/gAt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7572986	7572986	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002591-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			163	101	245	0	ENST00000269305.4:c.1123C>T	p.Gln375Ter	p.Q375*	ENST00000269305	NM_001126112.2	375	Cag/Tag						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68835627	68835627	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002591-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			240	405	342	0	ENST00000261769.5:c.220del	p.Arg74AspfsTer9	p.R74Dfs*9	ENST00000261769	NM_004360.3	73	aCc/ac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002230-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			587	23	387	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764146326		P-0002230-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			999	21	313	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112178276	112178276	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs146048493		P-0001859-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			874	596	585	0	ENST00000257430.4:c.6985A>G	p.Ile2329Val	p.I2329V	ENST00000257430	NM_000038.5	2329	Att/Gtt						NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117710536	117710536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001859-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			749	225	324	0	ENST00000368508.3:c.1736C>T	p.Pro579Leu	p.P579L	ENST00000368508	NM_002944.2	579	cCt/cTt						NEWRECORD																																																																									
CARD11	84433	MSKCC	GRCh37	7	2946426	2946426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001859-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			983	417	496	0	ENST00000396946.4:c.3311G>A	p.Arg1104Gln	p.R1104Q	ENST00000396946	NM_032415.4	1104	cGg/cAg						NEWRECORD																																																																									
PIK3R3	8503	MSKCC	GRCh37	1	46531782	46531782	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001859-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			940	655	682	0	ENST00000262741.5:c.565delC	p.Gln189ArgfsTer23	p.Q189Rfs*23	ENST00000262741	NM_003629.3	189	Cag/ag						NEWRECORD																																																																									
PARP1	142	MSKCC	GRCh37	1	226562006	226562006	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001859-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			693	372	523	0	ENST00000366794.5:c.1991delA	p.Lys664SerfsTer12	p.K664Sfs*12	ENST00000366794	NM_001618.3	664	aAg/ag						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134880931	134880931	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001859-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			895	131	469	0	ENST00000398015.3:c.1494del	p.Gly499AlafsTer28	p.G499Afs*28	ENST00000398015	NM_004441.4	498	ccT/cc						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0002625-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			177	91	128	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	152027813	152027813	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002625-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			349	160	260	0	ENST00000262189.6:c.262C>T	p.Gln88Ter	p.Q88*	ENST00000262189	NM_170606.2	88	Caa/Taa						NEWRECORD																																																																									
YAP1	10413	MSKCC	GRCh37	11	102100462	102100462	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002625-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			353	335	269	0	ENST00000282441.5:c.1306T>A	p.Ser436Thr	p.S436T	ENST00000282441	NM_001130145.2	436	Tca/Aca						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061151	38061151	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002625-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			122	22	66	0	ENST00000250448.2:c.838A>G	p.Ser280Gly	p.S280G	ENST00000250448	NM_004496.3	280	Agc/Ggc						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061099	38061108	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTCCTTGC	GGGTCCTTGC	-			P-0002625-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			98	20	66	0	ENST00000250448.2:c.881_890del	p.Arg294ProfsTer24	p.R294Pfs*24	ENST00000250448	NM_004496.3	294	cGCAAGGACCCc/cc						NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061120	38061140	+	inframe_deletion	In_Frame_Del	DEL	CCGCCCTTGGCGCCGCTGCCC	CCGCCCTTGGCGCCGCTGCCC	-			P-0002625-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			95	22	59	0	ENST00000250448.2:c.849_869del	p.Gly284_Gly290del	p.G284_G290del	ENST00000250448	NM_004496.3	283	ggGGGCAGCGGCGCCAAGGGCGGc/ggc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0004562-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			68	52	414	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc						NEWRECORD																																																																									
ZFHX3	463	MSKCC	GRCh37	16	72830432	72830440	+	inframe_deletion	In_Frame_Del	DEL	GGGGGTGGA	GGGGGTGGA	-			P-0004562-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			53	40	381	0	ENST00000268489.5:c.6141_6149del	p.Pro2048_Pro2050del	p.P2048_P2050del	ENST00000268489	NM_006885.3	2047	ccTCCACCCCCa/cca						NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52436640	52436640	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004562-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			126	29	569	0	ENST00000460680.1:c.2034T>G	p.Phe678Leu	p.F678L	ENST00000460680	NM_004656.3	678	ttT/ttG						NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143114240	143114240	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0004562-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			84	15	618	0	ENST00000262992.4:c.1181A>T	p.Asn394Ile	p.N394I	ENST00000262992	NM_001101669.1	394	aAt/aTt						NEWRECORD																																																																									
MET	4233	MSKCC	GRCh37	7	116340123	116340123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004562-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			105	19	615	1	ENST00000397752.3:c.985C>A	p.Leu329Ile	p.L329I	ENST00000397752	NM_000245.2	329	Ctt/Att						NEWRECORD																																																																									
FANCC	2176	MSKCC	GRCh37	9	98003025	98003025	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0004562-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			80	11	393	0	ENST00000289081.3:c.251A>G	p.Asp84Gly	p.D84G	ENST00000289081	NM_000136.2	84	gAt/gGt						NEWRECORD																																																																									
ABL1	25	MSKCC	GRCh37	9	133760112	133760112	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004562-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			67	37	502	0	ENST00000318560.5:c.2435A>C	p.Asn812Thr	p.N812T	ENST00000318560	NM_005157.4	812	aAc/aCc						NEWRECORD																																																																									
ARID5B	84159	MSKCC	GRCh37	10	63852527	63852527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004562-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			130	21	598	0	ENST00000279873.7:c.3305C>T	p.Ser1102Phe	p.S1102F	ENST00000279873	NM_032199.2	1102	tCt/tTt						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32907453	32907453	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004562-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			41	58	540	0	ENST00000380152.3:c.1838T>G	p.Leu613Arg	p.L613R	ENST00000380152		613	cTa/cGa						NEWRECORD																																																																									
TCF3	6929	MSKCC	GRCh37	19	1619379	1619379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004562-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			140	61	598	1	ENST00000344749.5:c.1262G>A	p.Gly421Asp	p.G421D	ENST00000344749	NM_001136139.2	421	gGc/gAc						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2164239	2164239	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004562-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			201	47	473	0	ENST00000398665.3:c.56T>G	p.Val19Gly	p.V19G	ENST00000398665	NM_032482.2	19	gTc/gGc						NEWRECORD																																																																									
GSK3B	2932	MSKCC	GRCh37	3	119720958	119720958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002848-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			510	133	591	0	ENST00000316626.5:c.217G>A	p.Ala73Thr	p.A73T	ENST00000316626		73	Gcc/Acc						NEWRECORD																																																																									
IRF4	3662	MSKCC	GRCh37	6	405027	405027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002848-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			551	103	443	0	ENST00000380956.4:c.1109C>T	p.Ala370Val	p.A370V	ENST00000380956	NM_001195286.1	370	gCg/gTg						NEWRECORD																																																																									
TRAF7	84231	MSKCC	GRCh37	16	2223241	2223241	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002848-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			636	60	507	0	ENST00000326181.6:c.853G>C	p.Glu285Gln	p.E285Q	ENST00000326181	NM_032271.2	285	Gag/Cag						NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29684388	29684388	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0002848-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			364	404	524	0	ENST00000358273.4:c.7970+1G>T		p.X2657_splice	ENST00000358273	NM_001042492.2	2657							NEWRECORD																																																																									
RARA	5914	MSKCC	GRCh37	17	38510675	38510675	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002848-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			778	765	440	0	ENST00000254066.5:c.929T>C	p.Phe310Ser	p.F310S	ENST00000254066	NM_000964.3	310	tTt/tCt						NEWRECORD																																																																									
STAG2	10735	MSKCC	GRCh37	X	123224550	123224550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002848-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			726	97	604	1	ENST00000218089.9:c.3403G>A	p.Glu1135Lys	p.E1135K	ENST00000218089	NM_001042749.1	1135	Gag/Aag						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577561	7577566	+	inframe_deletion	In_Frame_Del	DEL	ACTGTT	ACTGTT	-			P-0002848-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			245	251	400	0	ENST00000269305.4:c.715_720delAACAGT	p.Asn239_Ser240del	p.N239_S240del	ENST00000269305	NM_001126112.2	239	AACAGT/-						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0000493-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			225	118	163	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178947827	178947827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000493-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			581	173	284	0	ENST00000263967.3:c.2702G>T	p.Cys901Phe	p.C901F	ENST00000263967	NM_006218.2	901	tGt/tTt						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174784	112174784	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0000493-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			444	107	172	0	ENST00000257430.4:c.3493A>T	p.Lys1165Ter	p.K1165*	ENST00000257430	NM_000038.5	1165	Aaa/Taa						NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98220489	98220489	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000493-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			462	136	200	0	ENST00000331920.6:c.2974G>T	p.Glu992Ter	p.E992*	ENST00000331920	NM_000264.3	992	Gaa/Taa						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0002524-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			273	395	403	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0002524-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			190	62	315	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0002524-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			313	14	444	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398255	25398255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002524-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			334	10	449	0	ENST00000256078.4:c.64C>A	p.Gln22Lys	p.Q22K	ENST00000256078	NM_033360.2	22	Cag/Aag						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41400182	41400182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002524-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			253	34	352	0	ENST00000373198.4:c.577C>T	p.Pro193Ser	p.P193S	ENST00000373198	NM_133170.3	193	Cct/Tct						NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189585649	189585649	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001913-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			491	340	570	0	ENST00000264731.3:c.910T>C	p.Tyr304His	p.Y304H	ENST00000264731	NM_003722.4	304	Tac/Cac						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0001913-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			385	161	446	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag						NEWRECORD																																																																									
FGFR4	2264	MSKCC	GRCh37	5	176520680	176520680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001913-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			198	354	347	0	ENST00000292408.4:c.1423G>A	p.Glu475Lys	p.E475K	ENST00000292408	NM_213647.1	475	Gag/Aag						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55273131	55273131	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001913-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			375	670	490	0	ENST00000275493.2:c.3454G>C	p.Asp1152His	p.D1152H	ENST00000275493	NM_005228.3	1152	Gac/Cac						NEWRECORD																																																																									
FGFR1	2260	MSKCC	GRCh37	8	38285507	38285507	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001913-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			296	475	546	0	ENST00000425967.3:c.646A>C	p.Asn216His	p.N216H	ENST00000425967	NM_001174067.1	216	Aac/Cac						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8485235	8485235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001913-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			279	442	541	1	ENST00000356435.5:c.3145C>T	p.Pro1049Ser	p.P1049S	ENST00000356435		1049	Cct/Tct						NEWRECORD																																																																									
SMAD3	4088	MSKCC	GRCh37	15	67477137	67477137	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001913-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			603	100	537	0	ENST00000327367.4:c.944T>G	p.Val315Gly	p.V315G	ENST00000327367	NM_005902.3	315	gTc/gGc						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0001913-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			474	250	512	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt						NEWRECORD																																																																									
FLCN	201163	MSKCC	GRCh37	17	17118598	17118598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001636-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			326	58	713	0	ENST00000285071.4:c.1333G>A	p.Ala445Thr	p.A445T	ENST00000285071	NM_144997.5	445	Gca/Aca						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000220-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			836	581	444	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134670234	134670234	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000220-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1003	577	446	1	ENST00000398015.3:c.145G>T	p.Asp49Tyr	p.D49Y	ENST00000398015	NM_004441.4	49	Gat/Tat						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2115535	2115535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000220-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			3291	861	741	0	ENST00000219476.3:c.1615C>T	p.Leu539Phe	p.L539F	ENST00000219476	NM_000548.3	539	Ctc/Ttc						NEWRECORD																																																																									
PIK3C3	5289	MSKCC	GRCh37	18	39613847	39613847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000220-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1210	501	591	0	ENST00000262039.4:c.1765G>A	p.Glu589Lys	p.E589K	ENST00000262039	NM_002647.2	589	Gaa/Aaa						NEWRECORD																																																																									
SMARCB1	6598	MSKCC	GRCh37	22	24133963	24133963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000220-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			374	368	346	0	ENST00000263121.7:c.114G>A	p.Met38Ile	p.M38I	ENST00000263121	NM_003073.3	38	atG/atA						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56178518	56178518	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000220-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			791	508	450	0	ENST00000399503.3:c.3491delA	p.Asp1164ValfsTer8	p.D1164Vfs*8	ENST00000399503	NM_005921.1	1164	gAt/gt						NEWRECORD																																																																									
CDH1	999	MSKCC	GRCh37	16	68849572	68849572	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000220-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			452	1657	694	0	ENST00000261769.5:c.1475delG	p.Arg492LysfsTer30	p.R492Kfs*30	ENST00000261769	NM_004360.3	492	aGa/aa						NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000468-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			234	63	273	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc						NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27056146	27056146	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000468-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			267	73	269	0	ENST00000324856.7:c.1142C>G	p.Ser381Cys	p.S381C	ENST00000324856	NM_006015.4	381	tCc/tGc						NEWRECORD																																																																									
NOTCH4	4855	MSKCC	GRCh37	6	32170240	32170240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000468-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			261	64	261	0	ENST00000375023.3:c.3368C>A	p.Pro1123His	p.P1123H	ENST00000375023	NM_004557.3	1123	cCt/cAt						NEWRECORD																																																																									
TET1	80312	MSKCC	GRCh37	10	70404899	70404899	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000468-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			302	92	435	0	ENST00000373644.4:c.2413A>T	p.Ser805Cys	p.S805C	ENST00000373644	NM_030625.2	805	Agc/Tgc						NEWRECORD																																																																									
DNMT3B	1789	MSKCC	GRCh37	20	31385034	31385034	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000468-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			244	68	307	0	ENST00000328111.2:c.1419delC	p.Tyr474IlefsTer116	p.Y474Ifs*116	ENST00000328111	NM_006892.3	473	ggC/gg						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0001707-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			817	253	402	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001707-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			867	90	367	0	ENST00000288602.6:c.1781A>T	p.Asp594Val	p.D594V	ENST00000288602	NM_004333.4	594	gAt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0001707-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			786	141	325	0	ENST00000269305.4:c.920-2A>T		p.X307_splice	ENST00000269305	NM_001126112.2	307							NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108175462	108175462	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1801516		P-0000133-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			687	17	290	0	ENST00000278616.4:c.5557G>A	p.Asp1853Asn	p.D1853N	ENST00000278616	NM_000051.3	1853	Gat/Aat						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000133-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			233	20	78	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt						NEWRECORD																																																																									
PMS2	5395	MSKCC	GRCh37	7	6045627	6045627	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs10254120		P-0000133-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			206	13	86	0	ENST00000265849.7:c.59G>A	p.Arg20Gln	p.R20Q	ENST00000265849	NM_000535.5	20	cGg/cAg						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578513	7578513	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000133-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			374	23	242	0	ENST00000269305.4:c.417G>C	p.Lys139Asn	p.K139N	ENST00000269305	NM_001126112.2	139	aaG/aaC						NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66280095	66280095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000427-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			509	119	276	0	ENST00000273854.3:c.1594C>T	p.Pro532Ser	p.P532S	ENST00000273854	NM_004439.5	532	Cca/Tca						NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187540465	187540465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000427-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			334	68	169	0	ENST00000441802.2:c.7275G>T	p.Leu2425Phe	p.L2425F	ENST00000441802	NM_005245.3	2425	ttG/ttT						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180047286	180047286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000427-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			758	215	363	0	ENST00000261937.6:c.2429C>T	p.Thr810Met	p.T810M	ENST00000261937	NM_182925.4	810	aCg/aTg						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000427-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			368	73	240	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat						NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18491483	18491483	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0000427-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			302	70	156	0	ENST00000266497.5:c.1395+1G>C		p.X465_splice	ENST00000266497		465							NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207078	1207078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000427-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			397	196	263	0	ENST00000326873.7:c.166G>T	p.Gly56Trp	p.G56W	ENST00000326873	NM_000455.4	56	Ggg/Tgg						NEWRECORD																																																																									
DOT1L	84444	MSKCC	GRCh37	19	2193751	2193751	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000427-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			446	159	312	0	ENST00000398665.3:c.557A>C	p.Glu186Ala	p.E186A	ENST00000398665	NM_032482.2	186	gAg/gCg						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11141508	11141508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000427-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			416	216	276	0	ENST00000344626.4:c.3485G>T	p.Gly1162Val	p.G1162V	ENST00000344626	NM_003072.3	1162	gGc/gTc						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40710553	40710553	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000427-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			399	97	142	0	ENST00000373198.4:c.4298G>C	p.Arg1433Pro	p.R1433P	ENST00000373198	NM_133170.3	1433	cGt/cCt						NEWRECORD																																																																									
KEAP1	9817	MSKCC	GRCh37	19	10599949	10599950	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0000427-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			554	247	403	0	ENST00000171111.5:c.1626_1627delGA	p.Glu542AspfsTer31	p.E542Dfs*31	ENST00000171111	NM_203500.1	542	gaGAcg/gacg						NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41306733	41306734	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0000427-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			399	86	205	0	ENST00000373198.4:c.925_926delCCinsAA	p.Pro309Lys	p.P309K	ENST00000373198	NM_133170.3	309	CCa/AAa						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs780442292		P-0000478-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			283	15	273	0	ENST00000269305.4:c.401T>G	p.Phe134Cys	p.F134C	ENST00000269305	NM_001126112.2	134	tTt/tGt						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151873888	151873888	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002364-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			225	109	402	0	ENST00000262189.6:c.8650C>T	p.Arg2884Ter	p.R2884*	ENST00000262189	NM_170606.2	2884	Cga/Tga						NEWRECORD																																																																									
MAPK1	5594	MSKCC	GRCh37	22	22160188	22160188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002364-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			267	112	369	0	ENST00000215832.6:c.443G>A	p.Arg148His	p.R148H	ENST00000215832	NM_002745.4	148	cGt/cAt						NEWRECORD																																																																									
MLL3	58508	MSKCC	GRCh37	7	151879491	151879491	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002364-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			257	105	382	0	ENST00000262189.6:c.5454del	p.Asn1818LysfsTer31	p.N1818Kfs*31	ENST00000262189	NM_170606.2	1818	aaT/aa						NEWRECORD																																																																									
KDM5A	5927	MSKCC	GRCh37	12	464400	464400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002808-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			616	51	595	0	ENST00000399788.2:c.794G>A	p.Arg265Lys	p.R265K	ENST00000399788	NM_001042603.1	265	aGa/aAa						NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110435648	110435648	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002808-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			210	46	172	0	ENST00000375856.3:c.2753A>C	p.Glu918Ala	p.E918A	ENST00000375856	NM_003749.2	918	gAg/gCg						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0001395-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			176	58	149	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa						NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56161270	56161270	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001395-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			499	90	415	0	ENST00000399503.3:c.1139T>C	p.Leu380Ser	p.L380S	ENST00000399503	NM_005921.1	380	tTa/tCa						NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8484345	8484347	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0001395-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			723	92	524	0	ENST00000356435.5:c.3185_3187del	p.Glu1062del	p.E1062del	ENST00000356435		1062	gAAGtg/gtg						NEWRECORD																																																																									
RARA	5914	MSKCC	GRCh37	17	38512309	38512309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001908-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			281	124	336	0	ENST00000254066.5:c.1220C>T	p.Pro407Leu	p.P407L	ENST00000254066	NM_000964.3	407	cCg/cTg						NEWRECORD																																																																									
NOTCH3	4854	MSKCC	GRCh37	19	15296093	15296093	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001908-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			207	70	448	0	ENST00000263388.2:c.2271C>G	p.His757Gln	p.H757Q	ENST00000263388	NM_000435.2	757	caC/caG						NEWRECORD																																																																									
AXIN1	8312	MSKCC	GRCh37	16	364615	364615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000125-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			258	239	747	0	ENST00000262320.3:c.947C>T	p.Thr316Ile	p.T316I	ENST00000262320	NM_003502.3	316	aCc/aTc						NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	15971325	15971325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000125-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			255	300	828	3	ENST00000268712.3:c.4624G>A	p.Val1542Met	p.V1542M	ENST00000268712	NM_006311.3	1542	Gtg/Atg						NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11145804	11145804	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000125-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			310	42	478	0	ENST00000344626.4:c.4166T>C	p.Leu1389Pro	p.L1389P	ENST00000344626	NM_003072.3	1389	cTc/cCc						NEWRECORD																																																																									
ASXL1	171023	MSKCC	GRCh37	20	31024002	31024002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000125-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			284	235	747	0	ENST00000375687.4:c.3487G>A	p.Asp1163Asn	p.D1163N	ENST00000375687	NM_015338.5	1163	Gat/Aat						NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003945-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			55	441	326	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89711879	89711879	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003945-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			76	103	378	0	ENST00000371953.3:c.497T>G	p.Val166Gly	p.V166G	ENST00000371953	NM_000314.4	166	gTa/gGa						NEWRECORD																																																																									
ERBB4	2066	MSKCC	GRCh37	2	212251576	212251576	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0003908-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			533	109	248	0	ENST00000342788.4:c.3481+2T>A		p.X1161_splice	ENST00000342788	NM_005235.2	1161							NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39914637	39914644	+	frameshift_variant	Frame_Shift_Del	DEL	CATAAGTT	CATAAGTT	-			P-0003908-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			612	45	346	0	ENST00000378444.4:c.4718_4725del	p.Glu1573GlyfsTer10	p.E1573Gfs*10	ENST00000378444	NM_001123385.1	1573	gAACTTATG/g						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0005845-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			739	240	526	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg						NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3820602	3820602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005845-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			654	40	383	0	ENST00000262367.5:c.2849C>T	p.Thr950Met	p.T950M	ENST00000262367	NM_004380.2	950	aCg/aTg						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76937729	76937729	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005845-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			919	62	561	0	ENST00000373344.5:c.3019C>T	p.Gln1007Ter	p.Q1007*	ENST00000373344	NM_000489.3	1007	Caa/Taa						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007174-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			661	81	508	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
JAK3	3718	MSKCC	GRCh37	19	17953950	17953950	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007174-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			393	389	386	0	ENST00000458235.1:c.452C>G	p.Pro151Arg	p.P151R	ENST00000458235	NM_000215.3	151	cCc/cGc						NEWRECORD																																																																									
RET	5979	MSKCC	GRCh37	10	43595999	43595999	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007174-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			489	490	500	0	ENST00000355710.3:c.166C>A	p.Leu56Met	p.L56M	ENST00000355710	NM_020975.4	56	Ctg/Atg						NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207065	1207065	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007174-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			848	227	529	0	ENST00000326873.7:c.157delG	p.Asp53ThrfsTer11	p.D53Tfs*11	ENST00000326873	NM_000455.4	51	atG/at						NEWRECORD																																																																									
ATM	472	MSKCC	GRCh37	11	108200975	108200975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007174-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			694	70	589	0	ENST00000278616.4:c.7342G>A	p.Asp2448Asn	p.D2448N	ENST00000278616	NM_000051.3	2448	Gat/Aat						NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47098879	47098879	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007174-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			749	127	551	1	ENST00000409792.3:c.6395G>T	p.Arg2132Leu	p.R2132L	ENST00000409792	NM_014159.6	2132	cGg/cTg						NEWRECORD																																																																									
MST1R	4486	MSKCC	GRCh37	3	49928037	49928037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007174-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			1017	172	714	0	ENST00000296474.3:c.3691C>T	p.Arg1231Cys	p.R1231C	ENST00000296474	NM_002447.2	1231	Cgc/Tgc						NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106513220	106513220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007174-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			631	50	561	0	ENST00000359195.3:c.2124C>A	p.His708Gln	p.H708Q	ENST00000359195	NM_002649.2	708	caC/caA						NEWRECORD																																																																									
CBFB	865	MSKCC	GRCh37	16	67116156	67116156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007174-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			1042	160	785	1	ENST00000412916.2:c.440G>T	p.Arg147Leu	p.R147L	ENST00000412916		147	cGg/cTg						NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37879606	37879606	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007174-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			357	363	461	0	ENST00000269571.5:c.1981A>G	p.Ile661Val	p.I661V	ENST00000269571		661	Att/Gtt						NEWRECORD																																																																									
STAT5B	6777	MSKCC	GRCh37	17	40379602	40379602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007174-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			1670	197	1129	0	ENST00000293328.3:c.230G>T	p.Gly77Val	p.G77V	ENST00000293328	NM_012448.3	77	gGg/gTg						NEWRECORD																																																																									
PTPN11	5781	MSKCC	GRCh37	12	112926298	112926300	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0007174-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			954	67	675	0	ENST00000351677.2:c.1436_1438del	p.Ile479del	p.I479del	ENST00000351677	NM_002834.3	477	gaCATc/gac						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009470-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			934	107	673	3	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009470-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			506	92	246	0				ENST00000310581	NM_198253.2								NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009470-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			1017	42	646	0	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag						NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30713794	30713794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009470-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			351	402	588	19	ENST00000359013.4:c.1194G>A	p.Met398Ile	p.M398I	ENST00000359013	NM_001024847.2	398	atG/atA						NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134898758	134898758	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009470-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			1169	70	893	3	ENST00000398015.3:c.1816G>T	p.Ala606Ser	p.A606S	ENST00000398015	NM_004441.4	606	Gct/Tct						NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185146675	185146675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009470-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			397	422	446	0	ENST00000265026.3:c.306C>A	p.Ser102Arg	p.S102R	ENST00000265026	NM_004721.4	102	agC/agA						NEWRECORD																																																																									
PDGFRA	5156	MSKCC	GRCh37	4	55129912	55129912	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009470-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			1123	70	812	2	ENST00000257290.5:c.446C>A	p.Pro149His	p.P149H	ENST00000257290	NM_006206.4	149	cCt/cAt						NEWRECORD																																																																									
HIST1H3G	8355	MSKCC	GRCh37	6	26271419	26271419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009470-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			924	867	1699	0	ENST00000305910.3:c.194A>G	p.Lys65Arg	p.K65R	ENST00000305910	NM_003534.2	65	aAg/aGg						NEWRECORD																																																																									
TSC2	7249	MSKCC	GRCh37	16	2134995	2134995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009470-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			623	610	596	1	ENST00000219476.3:c.4537G>A	p.Glu1513Lys	p.E1513K	ENST00000219476	NM_000548.3	1513	Gag/Aag						NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	9943744	9943744	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009470-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			784	85	558	0	ENST00000330684.3:c.1197T>G	p.Cys399Trp	p.C399W	ENST00000330684	NM_001134407.1	399	tgT/tgG						NEWRECORD																																																																									
CSF3R	1441	MSKCC	GRCh37	1	36932840	36932863	+	inframe_deletion	In_Frame_Del	DEL	GATTGTGGGCACCCAGGAGCCCAG	GATTGTGGGCACCCAGGAGCCCAG	-			P-0009470-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			1185	70	842	0	ENST00000361632.4:c.2008_2031del	p.Leu670_Ile677del	p.L670_I677del	ENST00000361632		670	CTGGGCTCCTGGGTGCCCACAATC/-						NEWRECORD																																																																									
ERCC2	2068	MSKCC	GRCh37	19	45872389	45872392	+	missense_variant	Missense_Mutation	ONP	TCCA	TCCA	CCCT			P-0009470-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			452	456	488	0	ENST00000391945.4:c.119_122delinsAGGG	p.Leu40_Glu41delinsGlnGly	p.L40_E41delinsQG	ENST00000391945	NM_000400.3	40	cTGGAg/cAGGGg						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013992-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			762	139	887	3	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt						NEWRECORD																																																																									
PALB2	79728	MSKCC	GRCh37	16	23641388	23641388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013992-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			1263	181	1545	2	ENST00000261584.4:c.2087C>T	p.Thr696Met	p.T696M	ENST00000261584	NM_024675.3	696	aCg/aTg						NEWRECORD																																																																									
ASXL2	55252	MSKCC	GRCh37	2	25966907	25966907	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013992-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			822	169	1280	2	ENST00000435504.4:c.2299A>G	p.Ser767Gly	p.S767G	ENST00000435504		767	Agt/Ggt						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180036945	180036945	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013992-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			851	229	1439	2	ENST00000261937.6:c.3767A>T	p.Glu1256Val	p.E1256V	ENST00000261937	NM_182925.4	1256	gAg/gTg						NEWRECORD																																																																									
RBM10	8241	MSKCC	GRCh37	X	47039440	47039440	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	C			P-0013992-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			454	123	732	0	ENST00000329236.7:c.828+4G>C		p.X276_splice	ENST00000329236	NM_001204466.1	276							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0014611-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			696	119	841	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc						NEWRECORD																																																																									
PPM1D	8493	MSKCC	GRCh37	17	58677906	58677906	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014611-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			308	276	700	0	ENST00000305921.3:c.131C>G	p.Ser44Trp	p.S44W	ENST00000305921	NM_003620.3	44	tCg/tGg						NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42034765	42034765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014611-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			499	80	632	0	ENST00000219905.7:c.4607G>T	p.Gly1536Val	p.G1536V	ENST00000219905	NM_001164273.1	1536	gGt/gTt						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0014611-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			395	72	635	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187							NEWRECORD																																																																									
TCF3	6929	MSKCC	GRCh37	19	1646427	1646427	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0014611-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			405	62	857	1	ENST00000344749.5:c.73-1G>C		p.X25_splice	ENST00000344749	NM_001136139.2	25							NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41408878	41408878	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014611-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			641	69	759	0	ENST00000373198.4:c.548G>T	p.Arg183Leu	p.R183L	ENST00000373198	NM_133170.3	183	cGg/cTg						NEWRECORD																																																																									
FLT4	2324	MSKCC	GRCh37	5	180055897	180055897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014611-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			408	47	791	0	ENST00000261937.6:c.1088C>T	p.Pro363Leu	p.P363L	ENST00000261937	NM_182925.4	363	cCg/cTg						NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76940086	76940086	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0014611-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			859	63	559	0	ENST00000373344.5:c.663-1G>T		p.X221_splice	ENST00000373344	NM_000489.3	221							NEWRECORD																																																																									
BTK	695	MSKCC	GRCh37	X	100608310	100608310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014611-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			902	88	778	1	ENST00000308731.7:c.1780G>T	p.Gly594Trp	p.G594W	ENST00000308731	NM_000061.2	594	Ggg/Tgg						NEWRECORD																																																																									
ERG	2078	MSKCC	GRCh37	21	39764351	39764352	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	T			P-0014611-T01-IM6									Unknown	UNKNOWN				MSK-IMPACT			787	97	1049	2	ENST00000288319.7:c.760_761delinsA	p.Pro254ThrfsTer37	p.P254Tfs*37	ENST00000288319	NM_182918.3	254	CCc/Ac						NEWRECORD																																																																									
